# hmmscan :: search sequence(s) against a profile database
# HMMER 3.2.1 (June 2018); http://hmmer.org/
# Copyright (C) 2018 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Naumovozyma_dairenensis_CBS421-ASM22711v2/GCA_000227115.2_ASM22711v2_protein.faa
# target HMM database:             /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# output directed to file:         /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Naumovozyma_dairenensis_CBS421-ASM22711v2/GCA_000227115.2_ASM22711v2_protein.PFam32-A
# per-seq hits tabular output:     /oak/stanford/groups/akundaje/marinovg/genomes/Fungi/Naumovozyma_dairenensis_CBS421-ASM22711v2/GCA_000227115.2_ASM22711v2_protein.PFam32-A.tblout
# number of worker threads:        20
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       CCD22170.1  [L=135]
Description: hypothetical protein NDAI_0A00100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-10   41.2   0.2    1.3e-10   40.9   0.2    1.1  1  MATalpha_HMGbox  Mating-type protein MAT alpha 1 HMG-box
  ------ inclusion threshold ------
       0.21   11.6   1.4       0.37   10.8   1.4    1.4  1  Defensin_2       Arthropod defensin


Domain annotation for each model (and alignments):
>> MATalpha_HMGbox  Mating-type protein MAT alpha 1 HMG-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.2   1.5e-14   1.3e-10      36      96 ..      52     113 ..      25     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 1.5e-14
  MATalpha_HMGbox  36 reakakkakkklNgFmgfRsYylkLfsdlqqkeaSgfltqlWekd.pfrnkWdliakvYsai 96 
                      r  +++   k +NgFm fRsYy++  + l+q  +S++l++lW++   ++  Wd  a+  +ai
       CCD22170.1  52 RPYQSRCYAKSINGFMLFRSYYSQYGKGLKQSLLSPLLSKLWNAHeTDQLLWDQFAQQCNAI 113
                      5567777889********************************865388999**999988876 PP

>> Defensin_2  Arthropod defensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.4   4.1e-05      0.37      14      31 ..     109     127 ..     105     128 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.1e-05
                 HHHHHTCSEEEEET.TSEE CS
  Defensin_2  14 HCllkGrrGGyCng.kkvC 31 
                  C ++G  GG C++  ++C
  CCD22170.1 109 QCNAIGHEGGICEDgTGIC 127
                 6************888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.72s 00:00:01.13 Elapsed: 00:00:01.87
# Mc/sec: 218.79
//
Query:       CCD22171.1  [L=211]
Description: hypothetical protein NDAI_0A00110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-07   31.3   1.4    1.3e-06   28.2   0.3    2.3  2  Homeobox_KN  Homeobox KN domain
    1.4e-06   28.0   1.3    3.3e-06   26.8   1.3    1.6  1  Homeodomain  Homeodomain
  ------ inclusion threshold ------
      0.011   15.2   0.1      0.025   14.0   0.1    1.6  1  Homez        Homeodomain leucine-zipper encoding, Homez


Domain annotation for each model (and alignments):
>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.039   2.3e+02      17      32 ..      59      74 ..      35      78 .. 0.68
   2 !   28.2   0.3   2.2e-10   1.3e-06       1      39 [.     152     190 ..     152     191 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.039
  Homeobox_KN 17 eeLlkeTglsvkqitn 32
                  +L + T+l+ k+ +n
   CCD22171.1 59 STLTQSTNLTSKDCSN 74
                 7899******998655 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 2.2e-10
  Homeobox_KN   1 WflahlhnPYPseedKeeLlkeTglsvkqitnWFINaRr 39 
                  W lah+++PY + +  + L++eT+ls+ qi+nW  N Rr
   CCD22171.1 152 WYLAHIQKPYLDSKNLKVLMEETKLSKVQIKNWISNRRR 190
                  99**********************************999 PP

>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   1.3   5.5e-10   3.3e-06       9      56 ..     143     193 ..     137     194 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 5.5e-10
                  HHHHHHHHHHHH...HSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Homeodomain   9 keqleeLeklFe...enrypsaeereeLAkklgLeerqVkvWFqNrRakek 56 
                  ke +++Le  +    +++y++++  + L ++++L++ q+k+W  NrR kek
   CCD22171.1 143 KEKVNRLEHWYLahiQKPYLDSKNLKVLMEETKLSKVQIKNWISNRRRKEK 193
                  68889999999977679********************************99 PP

>> Homez  Homeodomain leucine-zipper encoding, Homez
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   4.3e-06     0.025      14      54 ..     149     192 ..     140     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.3e-06
       Homez  14 LekYysqhgl...lqekDldkLckksklsaqqVrdWFaskesee 54 
                 Le++y +h +   l  k l  L +++kls  q+++W   +  +e
  CCD22171.1 149 LEHWYLAHIQkpyLDSKNLKVLMEETKLSKVQIKNWISNRRRKE 192
                 77777777544448999*******************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1176  (0.0655921); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.79s 00:00:01.30 Elapsed: 00:00:00.92
# Mc/sec: 695.39
//
Query:       CCD22172.1  [L=377]
Description: hypothetical protein NDAI_0A00120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-61  206.9   0.0    5.3e-61  206.6   0.0    1.0  1  PALP      Pyridoxal-phosphate dependent enzyme


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.6   0.0   2.9e-65   5.3e-61      21     294 .]      30     328 ..       4     328 .. 0.90

  Alignments for each domain:
  == domain 1  score: 206.6 bits;  conditional E-value: 2.9e-65
                 CCE.EEEEEGGGSTTSBTTHHHHHHHHHHHHTT.....TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT-EEEEECCHHHH CS
        PALP  21 gvp.lflKlEslnptgSfKdRgaeyllarlkeg.....tgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGaevvevggdyde 113
                  +p +f+K+E+l+p+gSfK Rg+ +l+++ + +     +++ +v+++s+GN+g a+A a+++l l++t+vvp  +++ +v+++++ Ga+v+  g  ++e
  CCD22172.1  30 ATPqFFVKYECLQPSGSFKSRGIGNLILKSAMNinkigQKTPQVFASSGGNAGFAAATACQRLSLPCTVVVPTATKQRMVEKIKSTGANVIINGAHWKE 128
                 34479************************555555567************************************************************* PP

                 HHHHHH.....HHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTT......TTEEEEEEE-SSSHHHHHHHHHHHH..HSTT-EEEEEEECTTCGGT CS
        PALP 114 avaaaa.....elaaegegaylvsqfdnptviegygtiglEileqlg......gkpdavvvpvGgGgliaGiaaglke..rrpdvrvigvepegsdala 199
                 a    +     ++  +  ++++v++fdnp+++eg++t++ Ei++ l+      +k++ +v++vGgGgl  Gi +gl++     ++ ++gve++g++ ++
  CCD22172.1 129 ADMFLKnsimnKIDTNHIEPIYVHPFDNPLIWEGHATMVDEIMDSLNdqnipiNKVKGIVCSVGGGGLYNGIIQGLQKynLADKIPIVGVETKGCHVFN 227
                 ****7753333555559*************************9777777799**************************866666*************** PP

                 TCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH......HHHHHHCCTTCEEEEEEE CS
        PALP 200 rslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal......klreagelkegdrvvvil 292
                 +sl+ +++ + ++ ++ia++l++ + s ++fe+++++ ++ v + d+ ++e++ +  ++  +vvep+++a+++ +      +     +l+ +d ++vi 
  CCD22172.1 228 TSLKLNKQIEFSKITSIATSLGTANISKKTFEYAQKYKTRSVVIEDKNVIETCLKYTQDYNMVVEPACGASIHLAyhtdilEKSLGHKLNSDDIILVIA 326
                 **************************************************************************9998877777778888889999999 PP

                 -B CS
        PALP 293 tg 294
                 +g
  CCD22172.1 327 CG 328
                 87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.45s 00:00:00.96 Elapsed: 00:00:00.63
# Mc/sec: 1810.24
//
Query:       CCD22173.1  [L=478]
Description: hypothetical protein NDAI_0A00130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     4e-150  501.1  55.5   4.6e-150  500.9  55.5    1.0  1  Vac17     Vacuole-related protein 17


Domain annotation for each model (and alignments):
>> Vac17  Vacuole-related protein 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.9  55.5  2.5e-154  4.6e-150       1     442 []       4     478 .]       4     478 .] 0.97

  Alignments for each domain:
  == domain 1  score: 500.9 bits;  conditional E-value: 2.5e-154
       Vac17   1 sledvserlLirsqeAvlqLdlwiqrqqklseledenslekit......qqYnlYlaqLnSLyvrsqyvrdklekerksrlstqneqsyiedLvyEFqd 93 
                 +l+d++erlLirsqeA+lqLdlwiqr++k++el++ n++++it      qqYn+YlaqLnSL+vr+qy+rdk+ ++ ++ +stq+eq+yie+LvyEF++
  CCD22173.1   4 TLQDITERLLIRSQEAILQLDLWIQREKKQQELSTLNNSNNITydhvdnQQYNVYLAQLNSLIVRVQYIRDKFLHNINQLDSTQDEQKYIENLVYEFKQ 102
                 59************************************************************************************************* PP

       Vac17  94 itlklnelak...enqssesspsSksskssldSfqPkPLkilerqkkslksptksslelkksvklkeeeevnkesvskcnslPssplrks..selssee 187
                 itlkln+l+k   +++sse+s++++sskss++Sf+PkPLki++r+k+++k         +++++++++ ++++e+++++nslPssp++ks  +++s++e
  CCD22173.1 103 ITLKLNDLSKknkTTSSSENSSKTASSKSSMESFEPKPLKIIKRTKNDQKV--------SNTINNDHDLIMQDENLQRPNSLPSSPIEKSsyVTISQNE 193
                 **********88888899999999***********************9998........79*****************************9999***** PP

       Vac17 188 rtlRlaksydtglnkrakrkknk......e.....sfFkenqRLSisffddided.................edstsDqdTVisssplesikkkendik 258
                 ++lRl+ks+d++++k+++r++n+      e     +fFk++qRLSi +fd++d++                 +d++sDq+TVis++   +ik++++d++
  CCD22173.1 194 QNLRLMKSQDFSTKKNTSRNTNYntirkfEndtinQFFKSQQRLSIGIFDNDDDNiystnmgtatritgeylTDNNSDQATVISQG---TIKRNDDDFT 289
                 ***********************8777661567779***************************9999887766*************...7899****** PP

       Vac17 259 pLrrynSheSilstk.liqPisslklnllsssltkplsstsrpslqsvevsskPvisksssksreqervssSkdLLssfvtqsakkklkten....... 349
                 pLrrynSheSils+k +++P++++++nl+++s+++++ss++rps+qs++v+s+P++++ss+       +++SkdLLssfvt+s ++++++++       
  CCD22173.1 290 PLRRYNSHESILSQKiSSTPLIDNNNNLTFNSKLPLYSSIRRPSMQSIHVTSNPIFARSSQ-------GKTSKDLLSSFVTSSIPRNNNRNIqtrtktr 381
                 ***************999*******************************************.......899**************************** PP

       Vac17 350 ..............sstkessffsnwnllnkfslvtsesenkteskkkakkplsnkekslsnekssssslvigsnsskfisstkepvvdntvsyeeLqe 434
                               ++t++ssff nwn+ln+f+++tse++++t++k++++ pl+n+++          +++i++n+++++ s+kepv+dnt+s+++L++
  CCD22173.1 382 tqsrrnnqlrdhtiNQTSTSSFFGNWNFLNRFNMITSETNTTTNRKRNYNIPLVNQSR----------AHNIDVNDTMDSISIKEPVYDNTISLDDLED 470
                 **********************************************************..........99***************************** PP

       Vac17 435 ALnTeLll 442
                 ALnTeLll
  CCD22173.1 471 ALNTELLL 478
                 ******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2046  (0.114117); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.42s 00:00:00.99 Elapsed: 00:00:00.53
# Mc/sec: 2723.91
//
Query:       CCD22174.1  [L=1091]
Description: hypothetical protein NDAI_0A00140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-40  138.2  11.7    2.8e-40  138.2  11.7    6.9  8  MRC1      MRC1-like domain


Domain annotation for each model (and alignments):
>> MRC1  MRC1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.52   9.4e+03      41      84 ..       2      43 ..       1      44 [. 0.68
   2 ?   -3.0   0.1      0.52   9.3e+03     102     121 ..     355     374 ..     333     389 .. 0.59
   3 ?   -9.2  14.9         1   1.8e+04      27     133 ..     433     546 ..     425     553 .. 0.57
   4 ?  -11.0  17.3         1   1.8e+04      39     108 ..     549     619 ..     538     647 .. 0.51
   5 ?   -7.0   9.6         1   1.8e+04      41      88 ..     671     715 ..     632     726 .. 0.43
   6 !  138.2  11.7   1.6e-44   2.8e-40       2     146 .]     722     861 ..     721     861 .. 0.93
   7 ?   -1.9   6.9      0.24   4.3e+03      29     117 ..     864     948 ..     862     970 .. 0.68
   8 ?   -3.5   1.4      0.75   1.3e+04      97     107 ..     983     993 ..     976     997 .. 0.56

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.52
        MRC1 41 eeliDdesedeevdkdelaaekakeereeDdkevekllkdittG 84
                ++liDd +  ++v+k    ++ ++   ee ++    +l+d+t+G
  CCD22174.1  2 DSLIDDLKPVTKVRKTTYNKKSLDPSIEEQEE--DGILTDVTSG 43
                67899998888888887777777766665544..4677777776 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.52
        MRC1 102 DsDdeeaelrrrkrrrrekk 121
                 +s++e ++ ++ kr+ +e+ 
  CCD22174.1 355 SSEEEGDKVKETKRNGKENT 374
                 34444455555555554444 PP

  == domain 3  score: -9.2 bits;  conditional E-value: 1
        MRC1  27 sdeeeedeeddaeleeliDdesedee.vdkdelaaekakeereeD...dkevekllkdittGg....lRkrrrraggndldlsDsDdee...aelrrrk 114
                 +de ++d e++      +  +s+ +  + k++l ++k k++ ++D   + +++kl+++ ++      l + r+  ++++l+++D + e+   ++l +++
  CCD22174.1 433 DDESSDDTENSLP----VSRTSKATIlTIKARLSKQKSKKNVQKDgtvNTNLNKLFENLKKSSrkqiLENQRELIENKGLNFEDIEMEKelvENLLEQE 527
                 3333333334422....3333322222447888888888888888444567888888888754122255556434467778888777776786666666 PP

        MRC1 115 rrrrekkrkalledeklek 133
                  +r++k r++ +e e+ ++
  CCD22174.1 528 IKRNQKIRQREKEREDKKN 546
                 6777777776666654444 PP

  == domain 4  score: -11.0 bits;  conditional E-value: 1
        MRC1  39 eleeliDdesedeevdkdelaaekakeereeDdkevekllk.dittGglRkrrrr.ag.gndldls...DsDdee..a 108
                 ++++ ++d+         e      ++e++e d+e++ + k di +    +rr+  ++  +d d++   D+D+ee  a
  CCD22174.1 549 NDSDSVNDSD-------VEFDLSANEQEEQESDAELSDVSKpDIDEEVVYQRRNIdEDgIQDEDVLdnvDADEEEeeA 619
                 3333333332.......2222333334444444444444433999998887886433222222333477888887322 PP

  == domain 5  score: -7.0 bits;  conditional E-value: 1
        MRC1  41 eel.iDdesedeevdkdelaaekakeereeDdkevekllkdittGglRk 88 
                 ++l +Dd++ +e+    + + + + e++  D  e ek   ++++ + R+
  CCD22174.1 671 DDLeVDDDK-NEN---LDTQPLELTEQERIDIIEAEKTKIKMQQEKMRH 715
                 222223322.222...112222222333333333333333333333333 PP

  == domain 6  score: 138.2 bits;  conditional E-value: 1.6e-44
        MRC1   2 kkkasefveeeAeeSeDeyaGlggvsdeeeedeeddaeleeliDdesedeevdkdelaaekakeereeDdkevekllkdittGglRkrrrraggndldl 100
                 kk+ ++f+e+eAeeSeDe++G+gg+++e + de+d+ ++e++iDd+s ++++d +e++++ a e++e+D ++++k+l di++Gg+R +r+ +gg +l+l
  CCD22174.1 722 KKGVTKFFEMEAEESEDEWHGIGGIDGEMS-DEYDS-DVEKMIDDYS-KANFDPNEIREMLAAENKEMDLNMINKILYDIKNGGFR-KRK-RGGLELEL 815
                 78899***********************99.99999.*********9.**************************************.554.36899999 PP

        MRC1 101 s.DsDdeeaelrrrkrrrrekkrkallede.kleklaknpkakAFvks 146
                 s D+Dd+   lr+++ +r+e +rk++le + + +kl knpk+kAF++s
  CCD22174.1 816 SeDEDDDA--LREYHLKRKELMRKRRLELGdDEKKLVKNPKSKAFFES 861
                 95555555..*******************999**************85 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 0.24
        MRC1  29 eeeedeeddaeleeliDdesedeevdkdelaaekakeereeDdkevekllkdittGglRkrrrraggndldlsDsDdee.aelrrrkrrr 117
                 e+ +d++++ ++e l + ++++ +  +d++++e a   +e+ d++  k  k i + ++   r       +  s+ +dee a  ++ ++++
  CCD22174.1 864 EDITDDKNAFNDEPLGETSTQEINNTQDDMKEEDAAVVKENGDSKRIKKKKTIISEEFV-QRT----LSFLKSSREDEEfAMNENLAKEQ 948
                 55567777779999999999999999**********99999999999999999999**9.664....34422356777743222222222 PP

  == domain 8  score: -3.5 bits;  conditional E-value: 0.75
        MRC1  97 dldlsDsDdee 107
                 d++ +D+Dde+
  CCD22174.1 983 DINNDDDDDED 993
                 44444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2244  (0.12516); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.36s 00:00:01.31 Elapsed: 00:00:00.54
# Mc/sec: 6061.70
//
Query:       CCD22175.1  [L=317]
Description: hypothetical protein NDAI_0A00150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-32  110.2   0.0    9.3e-32  109.0   0.0    1.7  1  KH_8      Krr1 KH1 domain
     0.0054   16.5   0.0       0.01   15.6   0.0    1.5  1  KH_1      KH domain


Domain annotation for each model (and alignments):
>> KH_8  Krr1 KH1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.0   0.0     1e-35   9.3e-32       1      81 []      39     119 ..      39     119 .. 0.99

  Alignments for each domain:
  == domain 1  score: 109.0 bits;  conditional E-value: 1e-35
        KH_8   1 SsfevlfpkyrekylkeveekikklleekklklevdlkerslkvsTtekTrDPyiilkardlikLisrgvpleeakkvleD 81 
                 Ssf +lfpkyre+ylk+v+++++++l++++l + +dl e+s++v+Tt+kT+DP iilkardlikL++r+vp+ +a+k+leD
  CCD22175.1  39 SSFMTLFPKYRETYLKSVWNDVTRALNTHNLACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILED 119
                 89******************************************************************************9 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-06      0.01      11      64 ..     142     187 ..     136     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-06
                 HHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEESHHHHHHHHHHH CS
        KH_1  11 vgriIGkgGsnIkeIreetgakIkvpksedegsderevtisGspeavekAkeli 64 
                   r++G++G+++k ++  t+++I v  +       ++v + G+ ++ ++ ++ +
  CCD22175.1 142 RQRLVGPNGNTLKALELLTKCYILVQ-G-------NTVSVMGPFKGLKEVRRVV 187
                 579**************9******87.4.......4899999998888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1805  (0.100675); expected 358.6 (0.02)
Passed bias filter:                      680  (0.0379274); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.68s 00:00:01.24 Elapsed: 00:00:00.61
# Mc/sec: 1572.24
//
Query:       CCD22176.1  [L=123]
Description: hypothetical protein NDAI_0A00160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2017  (0.112499); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.66s 00:00:01.12 Elapsed: 00:00:01.05
# Mc/sec: 353.61
//
Query:       CCD22177.1  [L=96]
Description: hypothetical protein NDAI_0A00170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-32  108.8   0.0    1.1e-31  108.6   0.0    1.1  1  DUF543    Domain of unknown function (DUF543)


Domain annotation for each model (and alignments):
>> DUF543  Domain of unknown function (DUF543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.0   6.2e-36   1.1e-31      11      74 .]      15      86 ..       5      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 6.2e-36
      DUF543 11 apse........sdldekwDaclsnllvkvglgllvGvvasvllfrrRaapvalGaGvGiGaAYtecsalFn 74
                ap++        s+l++kwD++lsn+lvkvglg++vGvv+sv++f+rR++pv+lG+G+G+G++Y+e++a+F+
  CCD22177.1 15 APPQqqlatidkSILNDKWDIVLSNTLVKVGLGFGVGVVTSVIFFKRRTFPVWLGIGFGAGRGYAEGDAIFR 86
                4444445555569**********************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.32s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 681.81
//
Query:       CCD22178.1  [L=740]
Description: hypothetical protein NDAI_0A00180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     6e-148  493.9   0.1     6e-148  493.9   0.1    1.5  2  Peptidase_M3  Peptidase family M3
  ------ inclusion threshold ------
          2    8.8   7.4       0.17   12.2   0.4    2.9  3  Pneumo_M2     Pneumovirus M2 protein


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       0.3   2.7e+03      79     124 ..     179     225 ..     158     262 .. 0.52
   2 !  493.9   0.1  6.7e-152    6e-148       1     457 [.     280     739 ..     280     740 .] 0.97

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.3
                   HHHHHHHHHHHHHHHHHHHHC..CT-SSS--CCCHHHHHHHHHCCCCS CS
  Peptidase_M3  79 kklrpllekelkllkelkkke..lglegelqpwDvaYYsekqreekyd 124
                   + l+    + +k+++++ k++  +gl+ + + + ++Y + k  +   +
    CCD22178.1 179 DFLKNHQFETYKFIEKIHKDSlrNGLK-SERNYQLKYIKGKISADALT 225
                   333333333344444443343334444.66666666666666665555 PP

  == domain 2  score: 493.9 bits;  conditional E-value: 6.7e-152
                   HHHC-S-HHHHHHHHHHHCTTTCCSS..THHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M3   1 llkespdrelRkeayeashskaaeqrntlensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllkelkk 97 
                   +lk ++++++Rk a+   ++k+       en+kll ++lklr+elA++lgy++ya+++l+ kmakn+etvl+fl++l++kl+pl+eke+k lk+lkk
    CCD22178.1 280 VLKTAKNPKTRKIAFLGDQNKVP------ENEKLLCNVLKLRKELANTLGYSTYANYNLDIKMAKNQETVLKFLNDLKEKLKPLAEKEIKILKDLKK 370
                   58999****************77......89****************************************************************** PP

                   HC...CT-S..SS--CCCHHHHHHHHHCCCCS--CCCCGGG-BHHHHHHCHHHHHHHHHTEEEEEETTS...--SSTT-EEEEEEET...TT-EEEE CS
  Peptidase_M3  98 ke...lgle..gelqpwDvaYYsekqreekydldqeelkeyfpletvleGllelfeeLfGikfveekdak.gevwhedVrkleVvde..ilseglig 186
                   ke   lg++  g +++wD++YY++k+++ ++++d e+++ey+ple +++G+l+++e+++++kf ee+d   ++vwh+dV++l+V+++  +++ +++g
    CCD22178.1 371 KEceeLGIPydGHYYIWDHRYYDNKYLKDNFNVDIEKISEYYPLESTIDGMLKIYETVLNLKFIEETDPLaKNVWHPDVKQLSVWNMddRANPAFVG 467
                   ***99999999*****************************************************9998777***************9999******* PP

                   EEEEEEC--TTS-SS-EEEEEE--B..TTS-B--EEEEEEEEE---BTTS--B--HHHHHHHHHHHHHHHHHHC--BSSGGGSTT.-S-CCCCCHHH CS
  Peptidase_M3 187 eiylDlyerkgKrggAasfglvksr..edgtrqlpviylllNftkpsskkPsLLtldevetLfHEfGHsmHsllsrteysnvsgt.nvpidfvElpS 280
                   +iy+Dly+r+gK+g+Aa+fg+ +s   e+ +r++pv++l++Nf+kp+++kP+LL+++e++t+fHE+GH++H+l+++++ ++++g+ +vp+dfvE+pS
    CCD22178.1 468 WIYFDLYPRDGKYGHAANFGIASSYitEENKRSYPVTALVCNFSKPTKNKPALLKHSEITTFFHELGHGIHDLVGQNKAARFNGPgSVPWDFVEAPS 564
                   ***********************99877899****************************************************************** PP

                   HHHHHGGGSHHHHHCC-B-TTT--B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCCGHH....HHHHHHHHHHCTTSCTTBTTSSGGG CS
  Peptidase_M3 281 qlmEnlltepevlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeqilkkdlletyaelrkkflglpvapdeasqa 377
                   q++E+++++++ l slskhy+tge+ipe+ll++li +k+vn al+ lrql+f+ fd+++H+ ++ e+    dll+ ++e r+++ +++  ++  + +
    CCD22178.1 565 QMLEFWTWNKNELLSLSKHYKTGEKIPEDLLDSLISTKHVNGALFALRQLHFGLFDMTVHTTKDIEN---LDLLKLWNESREEICLVENGENFTKGY 658
                   *****************************************************************99...47**************99888865555 PP

                   .C-CCCHTSS-TTTTCHHHHHHHHHHHHHHCCHHCCTT-CCHHHHHHHHTTTTTTSS-HHHHHHCCCSS---SHHHHHHCT CS
  Peptidase_M3 378 .sFghlfahgYaanYYsylyaevlaldifekffeedplnretGeryrkeiLsrGgskdplellkkflgrepsadallkalg 457
                    sFgh++++ Y+a+YY+y +aev+a+d++++ f+ +pl++ +G +yr+ iL++Gg  + ++ l +flgreps +++lk+lg
    CCD22178.1 659 nSFGHIISDSYSAGYYGYMWAEVFAADMYHTKFAPNPLDVSVGIKYRDLILAKGGLYEINDNLLEFLGREPSNKPFLKELG 739
                   5*****99**********************************************************************997 PP

>> Pneumo_M2  Pneumovirus M2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   1.9e-05      0.17      17      77 ..      31      92 ..      15     103 .. 0.70
   2 ?   -2.3   0.2       0.6   5.4e+03      37      60 ..     174     197 ..     168     212 .. 0.78
   3 ?   -2.2   0.0      0.57   5.1e+03      59      83 ..     571     595 ..     565     599 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.9e-05
   Pneumo_M2 17 issilissesmiatfnhknilqfnhnhldnhqrll.nnifdeihwtpknlldatqqflqhln 77
                +s  li       t+  +ni+  n    ++h  +   n + +  wtpk++ld t+ ++++ n
  CCD22178.1 31 VSVSLINIIQSKRTYSPNNIIMTNNTVNNKHGFIApANTVPDWTWTPKQILDETKSYIEKTN 92
                3333444444456888889988775555555544346899999*************998876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.6
   Pneumo_M2  37 lqfnhnhldnhqrllnnifdeihw 60 
                 +q + + l nhq    + +++ih 
  CCD22178.1 174 VQNDDDFLKNHQFETYKFIEKIHK 197
                 577788999999888888888885 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.57
   Pneumo_M2  59 hwtpknlldatqqflqhlnipediy 83 
                  w  ++ll  ++ +    +iped+ 
  CCD22178.1 571 TWNKNELLSLSKHYKTGEKIPEDLL 595
                 5777889999999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.50
# Mc/sec: 4473.10
//
Query:       CCD22179.1  [L=171]
Description: hypothetical protein NDAI_0A00190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1315.01
//
Query:       CCD22180.1  [L=330]
Description: hypothetical protein NDAI_0A00200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.2    7.8  11.8       0.43   11.3   0.9    3.7  2  PMC2NT    PMC2NT (NUC016) domain


Domain annotation for each model (and alignments):
>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.9   2.4e-05      0.43      12      43 ..      45      76 ..      32     149 .. 0.76
   2 ?   -1.4   3.7      0.21   3.8e+03       9      53 ..     177     223 ..     173     289 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.4e-05
      PMC2NT 12 aeDldfyrsldpefaksldeqserllslinsl 43
                +eD+d y+ ++p+++k+ld++ + ll++++s+
  CCD22180.1 45 NEDVDSYNYYNPAISKHLDSDRDILLDMVSSM 76
                79***************************998 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.21
      PMC2NT   9 aLp..aeDldfyrsldpefaksldeqserllslinsllklaasksei 53 
                 +Lp  ++D+d  +s ++ef ++  +qs + l+l ++  + ++++++ 
  CCD22180.1 177 NLPnlSKDIDQVESNENEFDHHNHHQSYKPLNLSDQEESDLSESDDE 223
                 56777888888888888888888888888888888764433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1543  (0.0860617); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.32s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2303.58
//
Query:       CCD22181.1  [L=319]
Description: hypothetical protein NDAI_0A00210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-13   48.4   0.0    1.6e-12   47.7   0.0    1.3  1  MT-A70    MT-A70


Domain annotation for each model (and alignments):
>> MT-A70  MT-A70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0     9e-17   1.6e-12      30     166 ..     121     272 ..     104     277 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 9e-17
                 HHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHH..CT..-EEEEEEEEEEE-TTSCBS-...BS-TTSSSBB-EEEEEEEEES---TTT.T.TB-T CS
      MT-A70  30 elkaLpipelldkrslvflWvtnrellelkrellkk..Wg..lelveeltwlkinklgepia...tlesgavlkkskEhllvgvkgnvkrstdk.iink 120
                  l++Lp++ l++k +++f+W   +++ el  +ll++  W   +++ eel ++ i  +++p +   + + +  l k   h+ + ++g+v+rstd+  i+ 
  CCD22181.1 121 LLTQLPLDRLVSKPGFLFIWASAKKINEL-TKLLNNelWAkkFRRSEELVFVPID-KNSPFYpglDQDDDTLLAKMQWHCWMCITGTVRRSTDGhLIHC 217
                 5899*********************9999.6666533474449***********9.6777776778899999*************************** PP

                 TSSBSEEEE.E-CTTTSS-THHHHHHHHHCTCS-EEEET.--G.......--TTE CS
      MT-A70 121 nvdtdliis.perehsrKPpelfellehllesarkLelF.aRs.......lrpgw 166
                 nvdtdl i  +++ +   P+ l+ ++e +++ +r+L++  aR        lrpgw
  CCD22181.1 218 NVDTDLNIEtEKTRNGAVPSHLYRVAENFSTATRRLHIIpARTgwetpvrLRPGW 272
                 *****98887999999*********************864666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2285.77
//
Query:       CCD22182.1  [L=841]
Description: hypothetical protein NDAI_0A00220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-81  272.4  24.6    2.4e-81  272.4  24.6    2.9  3  Spb1_C           Spb1 C-terminal domain
    1.4e-53  181.6   0.1    3.5e-53  180.4   0.1    1.7  1  FtsJ             FtsJ-like methyltransferase
    4.1e-43  147.0  21.1    4.1e-43  147.0  21.1    5.8  6  DUF3381          Domain of unknown function (DUF3381)
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.29   10.9   0.0    1.7  1  Methyltransf_23  Methyltransferase domain
        1.9    8.8   7.4       0.19   12.0   1.0    2.4  2  SPATIAL          SPATIAL


Domain annotation for each model (and alignments):
>> Spb1_C  Spb1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   3.4      0.85   3.1e+03      99     130 ..     352     381 ..     320     406 .. 0.56
   2 ?   -1.7   0.2      0.51   1.8e+03     135     156 ..     581     602 ..     579     613 .. 0.72
   3 !  272.4  24.6   6.8e-85   2.4e-81       7     211 .]     616     832 ..     607     832 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.85
      Spb1_C  99 keklralnarpiKKVaEAkaRKklkaakklek 130
                  + l++l+++  KK    + ++k+ ++k+ e 
  CCD22182.1 352 EKELQDLQEK--KKLSQKREKRKKNETKQKEL 381
                 3333333222..33333333333333333333 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.51
      Spb1_C 135 aeliaededlsekeKakqiekl 156
                 +e++ + +++s+k K+++i+k 
  CCD22182.1 581 SESVGDLSKVSKKRKIQEIQKN 602
                 5677788888888888888875 PP

  == domain 3  score: 272.4 bits;  conditional E-value: 6.8e-85
      Spb1_C   7 dfevvpaeekeekdsddeeeeede...........kidiltaealalaqqlatgkktkedlidegfnryafndkdgLPeWFldDEkkhskpekpitkea 94 
                 dfe v+++ ++++  d++ ++e+e           +idi+t ea++la+qla g++tk+dl+degfnryaf+d+++LP+WF +DEk+hsk ++pitkea
  CCD22182.1 616 DFELVANDVTTDEAFDSDYDSEEErkqtakekhsaDIDIATVEAMTLAHQLALGQRTKHDLVDEGFNRYAFRDTENLPDWFREDEKEHSKINRPITKEA 714
                 555555555554444444433333445566667779*************************************************************** PP

      Spb1_C  95 vaaikeklralnarpiKKVaEAkaRKklkaakkleklkkkaeliaededlsekeKakqieklmkkaakk.kkkkkvkvvvakkankglsgrpkgvkgky 192
                 v+a+kek+ralnarpiKKVaEAkaRK+++a+ +lek+kkka li++d+d sek+K ++i+klm+k++kk k+k++v++v+a+++nk lsgrpkg+kgky
  CCD22182.1 715 VMALKEKMRALNARPIKKVAEAKARKRMRAVARLEKIKKKAGLINDDNDKSEKDKSEEIAKLMRKVTKKqKQKPRVTLVYASGKNKALSGRPKGIKGKY 813
                 ******************************************************************77758**************************** PP

      Spb1_C 193 kmVDkrmKkdlRalkriak 211
                 kmVD +mK+++Ral+riak
  CCD22182.1 814 KMVDGVMKNEQRALRRIAK 832
                 ****************998 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.4   0.1   9.6e-57   3.5e-53       1     177 []      25     202 ..      25     202 .. 0.98

  Alignments for each domain:
  == domain 1  score: 180.4 bits;  conditional E-value: 9.6e-57
                 CCCCHHHHHHHHHHHHT-S.-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHHTTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S-S CS
        FtsJ   1 yrsRsayKLleidekfklf.kpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvdlvvsDgapd 98 
                 yr+Rs++K+++i+ekf+ f ++ k v+Dl+aaPG+w+qv+++ +  ++ +++vD+ pm+p+ ++ t+q dit+++ + k++ +++  k+d v++Dgap+
  CCD22182.1  25 YRARSSFKIIQINEKFGHFlEKSKVVIDLCAAPGSWCQVASKLCPVNSLIIGVDIVPMKPMTNCITFQSDITTEDCRSKLRGYMKTWKADTVLHDGAPN 123
                 9***************97736999*******************9889**************************************************** PP

                 S-CHHHHHHHHHCCCCHHHHCCHCCCCECCCEEEECCCHCCCHHHHHHHHHCCEEEEEEEE-SS--CCG-EEEEEEEEC CS
        FtsJ  99 vsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
                 v + +++d+++qsqL l+al+la + l  ggtfv+kifr+++ ++l+  ++++F+kv+ +kP++sr+ s+e+f+vc+gf
  CCD22182.1 124 VGLGWVQDAFTQSQLTLQALKLAAENLVVGGTFVTKIFRSKDYNKLIWVFQQLFDKVEATKPPASRNVSAEIFVVCKGF 202
                 *****************************************************************************98 PP

>> DUF3381  Domain of unknown function (DUF3381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0  21.1   1.2e-46   4.1e-43       1     165 []     236     383 ..     236     383 .. 0.94
   2 ?    0.5   2.6      0.13   4.8e+02     108     158 ..     433     483 ..     408     489 .. 0.67
   3 ?   -1.0   0.5      0.38   1.4e+03      98     141 ..     502     543 ..     493     557 .. 0.61
   4 ?   -0.7   4.1      0.29   1.1e+03      89     142 ..     590     645 ..     584     663 .. 0.46
   5 ?   -3.1  11.3       1.7     6e+03      87     153 ..     720     789 ..     697     793 .. 0.69
   6 ?   -3.7   4.7       2.5     9e+03     141     161 ..     820     840 ..     812     841 .] 0.55

  Alignments for each domain:
  == domain 1  score: 147.0 bits;  conditional E-value: 1.2e-46
                 XXXXXXXXXXXXXXXXXX--EEEHHHHHT-----HHHHH-SEEE--S..HHHHH.HHSSSSS-SSHHHHHH-SSS--HHHHHHHHHHHHHHHHH-XXXX CS
     DUF3381   1 pekkkrkreGYeegdytlykelsvseFiksedpielLgkaneitfdk..eelkekilkhpktteEikelckDLkVLGkkdlkkLLkWrkklrkelglee 97 
                 pekk rkr+GYeegd +ly+e +++eF+k+edpi++Lg++n++t++k  +e++  ++k+++tt+E++ +++DLkVLGkkd+k++LkWrk++r+ lg+++
  CCD22182.1 236 PEKKVRKRQGYEEGDNLLYHEKDIIEFVKTEDPITMLGETNKFTINKedHEWNI-LRKMKQTTKEFLLCIEDLKVLGKKDFKMILKWRKAARDLLGIDK 333
                 69********************************************98777777.9***************************************9997 PP

                 .................XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3381  98 kkekeekeeeeeedeeeeeeeeeeaeeeeldeeeeiekeleelkeeekkkkKrekkkankkkqkeiqr 165
                 +                  +e+ e+e+++l+eee+iekel++l+e++k  +Krek+k+n+ kqke  r
  CCD22182.1 334 E------------------NEKPEIEVTPLTEEEQIEKELQDLQEKKKLSQKREKRKKNETKQKELVR 383
                 6..................223348899************************************9765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.13
                 .......X..XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3381 108 eeedeeee..eeeeeeaeeeeldeeeeiekeleelkeeekkkkKrekkkankk 158
                 ee ++++e   +e+ + e +++ + + +ekel+++ +    k +r +++an +
  CCD22182.1 433 EELTKDDEihIDENLVRERDDMVDADDLEKELDSMYQS--YKSRRAERNANFR 483
                 333333333345667788889999999*****998765..6677888877654 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.38
                 .................X.XXXX..XXXXXXXXXXXXXXXXXXXX CS
     DUF3381  98 kkekeekeeeeeedeeee.eeeeeeaeeeeldeeeeiekeleelk 141
                 k++++ + +ee +d     ++++++  ++++d++++i++ ++++k
  CCD22182.1 502 KDQENGEGAEEPKD---YiDDDNDTDLSDSDDDDDAINSLISKIK 543
                 33333333333333...1345556666677788889998888877 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.29
                 HHHH-XXXX.............................XXXXX..XXXXXXXXXXXXXXXXXXXXX CS
     DUF3381  89 lrkelgleekkekeekeeeeeedee............eeeeeeeeaeeeeldeeeeiekeleelke 142
                 + k+ +++e +++++++++eeed+             +          e  d++   e+e ++  +
  CCD22182.1 590 VSKKRKIQEIQKNDSDSSDEEEDSGsdfelvandvttD----------EAFDSDYDSEEERKQTAK 645
                 44444455555555555555555443333333322220..........222222222222222222 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 1.7
                 HHHHHH-XXXX...................X.XXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3381  87 kklrkelgleekkekeekeeeeeedee..ee.eeeeeeaeeeeldeeeeiekeleelkeeekkkkKrekk 153
                 +k+r   ++  kk +e k+ +        e+ +++   ++++++++e+   +e+++l  + +kk+K++ +
  CCD22182.1 720 EKMRALNARPIKKVAEAKARKRMRAVArlEKiKKKAGLINDDNDKSEKDKSEEIAKLMRKVTKKQKQKPR 789
                 4555555555554444444444443333323666677777788888888889999999999999998866 PP

  == domain 6  score: -3.7 bits;  conditional E-value: 2.5
                 XXXXXXXXXXXXXXXXXXXXX CS
     DUF3381 141 keeekkkkKrekkkankkkqk 161
                  ++e++ ++r  kk +kkk++
  CCD22182.1 820 MKNEQRALRRIAKKHQKKKKR 840
                 445555555555555555544 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.1e-05      0.29      16      68 ..      40      93 ..      25     137 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.1e-05
  Methyltransf_23 16 llpklraggrvLdiGcGtGillevl.rengf..svtgvDlspeaveiaekakkaqk 68
                     ++  l++++ v+d+ ++ G++++v+ + +++   ++gvD+ p++     + ++ q+
       CCD22182.1 40 FGHFLEKSKVVIDLCAAPGSWCQVAsKLCPVnsLIIGVDIVPMKPMT--NCITFQS 93
                     44457899*****************55566664588****9975443..3444444 PP

>> SPATIAL  SPATIAL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.0   5.4e-05      0.19      54     104 ..     328     382 ..     280     403 .. 0.76
   2 ?   -1.4   0.7       0.7   2.5e+03      80     105 ..     749     776 ..     695     823 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.4e-05
     SPATIAL  54 pigdseskkeprlklssv..seawreelkelaskvalvsketekkke..ekkeep 104
                  +g  +++++p ++++++   e++++el++l +k +l++k  ++kk+  ++ke +
  CCD22182.1 328 LLGIDKENEKPEIEVTPLteEEQIEKELQDLQEKKKLSQKREKRKKNetKQKELV 382
                 347789********9999778899*************977666666533333333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.7
     SPATIAL  80 kelaskvalvsketekkkeekkeep..e 105
                  ++ +k +l+ ++++k +++k+ee    
  CCD22182.1 749 EKIKKKAGLINDDNDKSEKDKSEEIakL 776
                 2222333333333333333333322221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2630  (0.14669); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.46
# Mc/sec: 5502.61
//
Query:       CCD22183.1  [L=426]
Description: hypothetical protein NDAI_0A00230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-28   97.9   0.0    1.2e-27   97.3   0.0    1.3  1  PIG-X     PIG-X / PBN1


Domain annotation for each model (and alignments):
>> PIG-X  PIG-X / PBN1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.0   6.4e-32   1.2e-27       3     210 ..     237     412 ..     235     413 .. 0.86

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 6.4e-32
       PIG-X   3 GlHptlqltvssaekslkppekeCklllyltlpssvfvDkYqLaeldelfaelvvvsgevdLEaPeykvk..ewgsevllelatpkeekeeseeewtvt 99 
                 G Hp++++++    +s+ p  ++C++++y +lp ++fvDk+q +         v v g++dLE+P+yk++  +wgse l++l++              +
  CCD22183.1 237 GIHPKITVDL----SSC-PATNDCEYYFYSQLPVEIFVDKFQSS--------PVFVFGQADLELPAYKLRdgPWGSETLFKLEP----------GQLNE 312
                 99********....333.4579********************88........599*************97447*******8877..........34458 PP

       PIG-X 100 lPlHlRYlapsseesgytevelpsPevfwaCeseaeegeklskspfdrknlgydglfgektvFyhlkpkpeseslvesievPvgdtsdaalVeigTllv 198
                 ++lH+RYl+p +++   t +++ +P++  aC+     ++++ ++pf +k+lg +++f+e+t Fy+l++++      +++++  ++++d+  Ve++Tll+
  CCD22183.1 313 ITLHSRYLEP-TNSYIQTGIDF-YPKIVKACDT--I-SNRIANNPFYSKSLGPESYFTENTLFYNLNSTK------LTVQIASANINDYFKVEYMTLLC 400
                 99********.44444444444.8*******33..3.368*************************99887......59********************* PP

       PIG-X 199 vllgflwvlwkl 210
                 ++l++++++ k+
  CCD22183.1 401 IILAMFYLIQKI 412
                 ********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 2830.69
//
Query:       CCD22184.1  [L=618]
Description: hypothetical protein NDAI_0A00240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        8.8    5.9  23.0      0.033   13.9  12.9    2.1  3  BSP_II    Bone sialoprotein II (BSP-II)


Domain annotation for each model (and alignments):
>> BSP_II  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9  12.9   1.8e-06     0.033      61     178 ..     165     283 ..     162     347 .. 0.77
   2 ?   -3.3   0.0      0.33   5.8e+03      98     124 ..     399     425 ..     386     453 .. 0.69
   3 ?   -3.3   1.1      0.32   5.7e+03      57      94 ..     550     583 ..     537     610 .. 0.37

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.8e-06
      BSP_II  61 eEeeeeeetsneeenneesnenedeeseaenttlsattpgygeektqgkgsiGlaaiklpkk..agdieekatkeeesdeeeeeeeeeeneeeeaevde 157
                 +Eee +++ s e++++ + ++n++  ++ ++  ls+ +p+   +  +++g+ G ++ + p    +++ ++k t +++ ++e++ ++++ n  + +e ++
  CCD22184.1 165 DEEEVDDDDSSEKDDEGDDDGNKESRKDIQAGLLSPLRPKNPYNLRSSSGKDGNSNRNSPLIsyNESPTKKKTLSHN-KTEQNGDDNDSNGTNGNEAND 262
                 78888888888999999999***999*************99999999999999988888874213333333333333.333333344667777777777 PP

      BSP_II 158 neqgvngtstnsteaengngs 178
                  +++ n  s+n+t++   n +
  CCD22184.1 263 SNNTANNISANTTNNGRTNIN 283
                 888888888888875544433 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.33
      BSP_II  98 tpgygeektqgkgsiGlaaiklpkkag 124
                 +p+yg+++ + +gs G + i  + k +
  CCD22184.1 399 HPSYGSSTAKRRGSSGSNVIYSSFKFE 425
                 678888888888888877776666543 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.32
      BSP_II  57 GdsseEeeeeeetsneeennee.snenedeeseaenttl 94 
                 G+s  E   ++   ++++++ + ++e        +n t+
  CCD22184.1 550 GKSHCELGGNNRCIEDDKSKGNfTKE-----GRLNNVTK 583
                 44444444433332222222222111.....11111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1172  (0.065369); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 3999.91
//
Query:       CCD22185.1  [L=309]
Description: hypothetical protein NDAI_0A00250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      8e-18   64.4   0.0    1.4e-17   63.6   0.0    1.4  1  ATP_transf  ATP adenylyltransferase
    6.1e-06   25.7   0.3    8.7e-06   25.2   0.3    1.4  1  DUF4931     Domain of unknown function (DUF4931)
    0.00084   19.2   0.0     0.0013   18.5   0.0    1.3  1  DUF4922     Domain of unknown function (DUF4922)
     0.0018   19.0   0.1     0.0044   17.7   0.1    1.6  1  HIT         HIT domain


Domain annotation for each model (and alignments):
>> ATP_transf  ATP adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   3.1e-21   1.4e-17       1      66 []     237     300 ..     237     300 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 3.1e-21
  ATP_transf   1 sYNllmtkewmvviPRsaegaeleevgglslNslglaGtllvkseeeldalkeepgpl.evLaevGv 66 
                 s+Nl++tk+w+++iPRs+ +a+     ++++Ns+g++G +lvk ++ +d++ e+p++l  vL e+G+
  CCD22185.1 237 SHNLILTKNWICLIPRSSTKAR---TLRIGFNSVGYLGIVLVKFQDVFDQIVENPQLLnSVLLECGF 300
                 8*********************...57***************************************7 PP

>> DUF4931  Domain of unknown function (DUF4931)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.3   1.9e-09   8.7e-06      28     122 ..      76     162 ..      51     265 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.9e-09
     DUF4931  28 ltdildeegslillknkfpvledtlqtvlietdeceedistyseehlrellrfgvkhwlelekseeyksvllfknhGPlsGGsikhahmqivGlk 122
                 l d+++++ +  l+ nk+p++ +   +v   t+e +++ s+ ++   +ell+f  +   +l++++e     +f n GP sG s+ h h+q++ l 
  CCD22185.1  76 LEDLFQDK-EYKLVLNKYPIISEHSLLV---TNEFKHQTSSLTS---KELLQFY-ELIAHLDENNEQSRHTIFYNCGPASGSSLDHKHLQLIKLP 162
                 45555544.455667******9977665...4555555555544...4566663.33334444444444455669****************9884 PP

>> DUF4922  Domain of unknown function (DUF4922)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.9e-07    0.0013      16     107 ..     133     225 ..     116     260 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.9e-07
     DUF4922  16 elpdltvfYN.GpkcGASAPDHlHfQagk..kgllplekdvkrlereleellvskeeeelsllk.eylrpvlvieskekeeaaelfeklyealpve 107
                 e ++ t+fYN Gp +G S  DH H+Q +k  ++l p+++++ + e + +++++++e   l+  + ++++ vl + ++++e ++++++++y++l ++
  CCD22185.1 133 EQSRHTIFYNcGPASGSS-LDHKHLQLIKlpSDLSPFQDKLLSREYHFSSTIKNEE--PLQDRNiSFAHFVLPLPKSTNEIDETFLQRCYKILLQK 225
                 34569*****89999976.6******875227899****99887665555554443..34332213344444455666666666777777776554 PP

>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   9.7e-07    0.0044      10      92 ..      80     158 ..      77     162 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 9.7e-07
                 EE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEE CS
         HIT  10 yeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHv 92 
                 ++d+++ ++l++ p    h L+++++   + ++lt +el ++ +++ ++ +  ++    ++ +++ n+g+++g s  h H+ +
  CCD22185.1  80 FQDKEYKLVLNKYPIISEHSLLVTNEFKHQTSSLTSKELLQFYELIAHLDENNEQ----SRHTIFYNCGPASGSSLDHKHLQL 158
                 7899999*******************99999999999999999999999998887....4679*****************855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.32s 00:00:00.83 Elapsed: 00:00:00.50
# Mc/sec: 1859.92
//
Query:       CCD22186.1  [L=72]
Description: hypothetical protein NDAI_0A00260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        5.5    5.2   9.7        5.7    5.1   9.7    1.0  1  Enamelin  Enamelin
          7    6.8   7.0        1.2    9.2   2.2    1.9  2  QCR10     Ubiquinol-cytochrome-c reductase complex subunit (Q


Domain annotation for each model (and alignments):
>> Enamelin  Enamelin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   9.7   0.00063       5.7      27      69 ..      14      56 ..      10      69 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.00063
    Enamelin 27 atepsaNsTvpetNSTqpnpggsqGgNdT.sptgnsaegantgs 69
                a+  +aN+T + tN+T ++ +gs+G N+  + ++  a + nt s
  CCD22186.1 14 AAVQAANATNQSTNATNAT-NGSNGSNGStTRISTGAASSNTLS 56
                555689************9.99****986266777777777754 PP

>> QCR10  Ubiquinol-cytochrome-c reductase complex subunit (QCR10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2     0.097   8.7e+02      14      27 ..       5      18 ..       1      24 [. 0.68
   2 ?    9.2   2.2   0.00013       1.2       4      31 ..      45      72 .]      42      72 .] 0.83

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.097
       QCR10 14 ptlalfGgaagvav 27
                ++ a+f+ +a+v +
  CCD22186.1  5 TIVAAFATVAAVQA 18
                56677887777765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00013
       QCR10  4 itlktltrygptlalfGgaagvavlfft 31
                i++  + + ++++++fG+a +++v+f++
  CCD22186.1 45 ISTGAASSNTLSAGIFGAAVAAGVAFLF 72
                556667777899*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1049  (0.0585086); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 541.03
//
Query:       CCD22187.1  [L=525]
Description: hypothetical protein NDAI_0A00270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-09   36.4  17.5    4.9e-05   23.4   0.9    5.2  4  Recep_L_domain  Receptor L domain


Domain annotation for each model (and alignments):
>> Recep_L_domain  Receptor L domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   4.3   2.2e-05       0.4       1      85 [.     124     218 ..     124     255 .. 0.78
   2 ?    0.8   7.7     0.028     5e+02      27      91 ..     214     291 ..     194     342 .. 0.74
   3 !   23.4   0.9   2.7e-09   4.9e-05       6      65 ..     328     384 ..     325     405 .. 0.82
   4 ?    0.7   0.0     0.032   5.7e+02      21      58 ..     384     420 ..     378     431 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.2e-05
                     TESEEESBEEEECCHCTSBGGGGGGGGG--EESS-EEEESET-SSEGCGTT--EEESSSSBTTTEEEEEES-TT..............-SBEE-T CS
  Recep_L_domain   1 nCtvieGnLeitltseneeeellsflsnveeitGyllikntnlkslsflenLrvIrgrelfeskyalaildnkn..............leeLglp 81 
                     +C+ i+G+L+++  +       +  l n++ i+G ++i+++n   +   +nL +I g+ + +s  +l+ ++ +n              l++L+++
      CCD22187.1 124 QCEEIQGSLKFSDFNGP-----IVDLGNIKIIHGDMIIEDVNDLVQFQAPNLITIDGNFVLKSLTSLVHIEIPNlilaksldwkiipiLNSLEMN 213
                     5**********988877.....789****************433333459********9999988888888888777777777777776666666 PP

                     T.TSE CS
  Recep_L_domain  82 s.lke 85 
                     + l+ 
      CCD22187.1 214 NnLES 218
                     54444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.028
                     GG--EESS-EEEESET-SSEGCGTT--EEESSSSBTT.............TEEEEEES-TT-SBEE-TTTSEESSSEE CS
  Recep_L_domain  27 snveeitGyllikntnlkslsflenLrvIrgrelfes.............kyalaildnknleeLglpslkeitsgsv 91 
                     +n+e ++   +i++t+l++l+ +++   ++  +  ++             +  l+i+ n++  eL++p lk++++ ++
      CCD22187.1 214 NNLESVNKIYIISDTSLTNLDSFSKVDDVEIFNINNNrfletikanikvvSKQLSIHANSKELELEMPYLKTVENITI 291
                     556666666666666666666666666555555444445555555554447888888888866999999999888555 PP

  == domain 3  score: 23.4 bits;  conditional E-value: 2.7e-09
                     ESBEEEECCHCTSBGGGGGGGGG--EESS-EEEESE.T-SSEGCGTT--EEESSSSBTTTE CS
  Recep_L_domain   6 eGnLeitltseneeeellsflsnveeitGylliknt.nlkslsflenLrvIrgrelfesky 65 
                      G L i  +++     +   ++nv+ i+G l+i+n+ nl++++fl++L++I g   fe+k+
      CCD22187.1 328 GGTLGIIANNKL----TNVDFNNVTNIEGGLMIENNlNLERIDFLDSLKLIGGAIHFEGKF 384
                     566666555555....56679********************************98888655 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.032
                     GGGGGGGG--EESS-EEEESET-SSEGCGTT--EEESS CS
  Recep_L_domain  21 ellsflsnveeitGyllikntnlkslsflenLrvIrgr 58 
                     +++ +++n++ ++G+  ik++   sl+  + L+ ++gr
      CCD22187.1 384 FKEIKFENLKLVKGSAFIKSS-SDSLNCNQWLTPVNGR 420
                     456778888888888888888.6666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1111  (0.0619666); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3566.95
//
Query:       CCD22188.1  [L=263]
Description: hypothetical protein NDAI_0A00280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-08   32.9   0.0    1.2e-07   32.0   0.0    1.5  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   6.6e-12   1.2e-07       3     142 ..      37     232 ..      35     233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 6.6e-12
                      EE--TT--HHHHHHHHHHHHHSSES.......EEEEEESSTHCSST-SCSSTHHHHHHHHHHH....TTCTTEEEEEEESEHHHHHHHTTT... CS
  CTP_transf_like   3 gGtFDpiHlGHlrlleqakklleed.......livgvpsdeppkkkkkplasaeeRlemlela....kevdevisvdpweltrevlkklkp... 82 
                      + +F+p+H+GH +l+++ ++  +++        + ++ s ++++k  +++a+  +R+em+ l+     e++++ +   +++  ++++k ++   
       CCD22188.1  37 DSSFNPPHYGHYTLVKKSLEFYKQKlvdhnkiHVLLLLSTNNADKA-PTPAAFPNRMEMMCLManllSENENISVSVAITIFGKFIDKTEIikt 129
                      669****************999999999999866667777777766.8***********99987664444444444455555556555555554 PP

                      ....T...EEEEEEEHHHHHHHHCHH.........HHHHHHHHHHHEEEEEE..........................HTTCEEE.EEEECCTT CS
  CTP_transf_like  83 ....d...klylvigadvledfsewk.........eleeilgnvklvvvsrp..........................ekqanvl.lkaekrtn 133
                              +++ ++g d++  +  +k         +le  +++v++ +  r                           +  a+++ l +++r++
       CCD22188.1 130 dfypTsegDIVYLVGFDTIIRIFDPKyylpitvleALEIFMEEVEFCCLTRIgsdqlmkqlsysadilagkyepiiprQWGARIHvLSNDERYS 223
                      33333678899999999999987777899999998999999********999**********************9999777777769999**** PP

                      TCSHHHHHH CS
  CTP_transf_like 134 giSstkire 142
                       +Ss++ire
       CCD22188.1 224 SVSSSEIRE 232
                      ********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1937.54
//
Query:       CCD22189.1  [L=756]
Description: hypothetical protein NDAI_0A00290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-63  213.5   0.0    5.9e-63  212.4   0.0    1.6  1  EMC1_C    ER membrane protein complex subunit 1, C-terminal


Domain annotation for each model (and alignments):
>> EMC1_C  ER membrane protein complex subunit 1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.4   0.0   3.3e-67   5.9e-63       2     213 .]     537     752 ..     536     752 .. 0.92

  Alignments for each domain:
  == domain 1  score: 212.4 bits;  conditional E-value: 3.3e-67
      EMC1_C   2 Enwivysyfne.kkkrqeivvveLyeskesnereklssaanssslea....velpevlsqsfifpegikalavttTkkgItskslllalesgqivslpr 95 
                 E+wi+ysyf++ +  +++i+v+eLyes  +n+r +  ++       +    ++lpe++s+sf+fpe ik++++++Tk+gI+  ++++ lesgqi+ +p+
  CCD22189.1 537 EHWIIYSYFSSePVPETKIAVIELYESLIPNQRLSNPES-A----GNallgANLPEIVSKSFLFPEIIKTMTLSKTKFGISVDAIIMELESGQITFIPK 630
                 9********9999*****************999763222.2....2234559*********************************************** PP

      EMC1_C  96 rlldpRrpv.rkptaae.keeglipYepllpidpksvishkrevagvk..kiltaptllEStslvlafGlDlfltrvaPsksFDlLskdFnkilLiltv 190
                 ++l++Rr++ +++t+++ ke++  pY  ++pi+++ vi+h r+++  +  ki++ pt+lESts+++ +G D+f+tr++Ps++FD+++++F+k +L++t+
  CCD22189.1 631 FVLNARRKEeKDMTDSDkKEFMASPYVAAIPINDHFVITHFRNLLMGEgsKIISLPTNLESTSIICDIGNDIFCTRISPSGQFDVMRPNFEKGKLLVTM 729
                 *********5555555556699**********************977667************************************************* PP

      EMC1_C 191 vallvlvlvlrplvkrkklnkrW 213
                 +++l+l++++rp+v  kkl++ W
  CCD22189.1 730 IVMLLLCYFIRPFVITKKLKAMW 752
                 *********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 5558.18
//
Query:       CCD22190.1  [L=469]
Description: hypothetical protein NDAI_0A00300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.3e-176  585.5   0.9   5.1e-176  585.2   0.9    1.1  1  Mgr1      Mgr1-like, i-AAA protease complex subunit


Domain annotation for each model (and alignments):
>> Mgr1  Mgr1-like, i-AAA protease complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  585.2   0.9  2.8e-180  5.1e-176       1     388 []       1     439 [.       1     439 [. 0.97

  Alignments for each domain:
  == domain 1  score: 585.2 bits;  conditional E-value: 2.8e-180
        Mgr1   1 malytPpdksdssakekkkkkkekdkseddik...kfyvrPslGLklWGPLvPasDnkaGLwtLvgiqtvvGllcllrfrslrkkkkksklvikkdiad 96 
                 malytPpd+sdss++++k+  k++++ +dd+k   kfy+rPslGL+lWGPLvPasDn++GLwtL++iqt +Gl++l+r+r+l+k+ +   ++i +diad
  CCD22190.1   1 MALYTPPDNSDSSSNDSKSYGKDNNDISDDTKkleKFYSRPSLGLRLWGPLVPASDNQNGLWTLITIQTGIGLFFLYRYRALGKHYS---KSIIRDIAD 96 
                 9******************9999999999988788**************************************************77...599****** PP

        Mgr1  97 iPsLnrfsttegelvv.......nkvstaeskplsss.........aasslskresekaknse..............ssskssrfaslkkvlylltGsv 165
                 +PsLnrfstt+g++ +       nkvst++sk +s++         ++ss+skre+ k ++s+              ++++ss+f+++k++ly ltG++
  CCD22190.1  97 VPSLNRFSTTHGQIPLtnnispvNKVSTPNSKLASNTifkgktplfGISSFSKRENPKDTSSSgvgeprksnwngndNFKYSSKFIIFKRILYGLTGAI 195
                 **************99999999999999999999988889999999999999999999998889*********************************** PP

        Mgr1 166 llsqslLeaarltllkYDPWleeaksvrdkkffndiikyYheGiDPtkvkvkdaasGnalstnipevkqsvalvraqaeaenpiikWfGPleykPmsfs 264
                 +lsqslLe++rl++lkYDPWleeak+vr+kkffndiikyY+eGiDPtkvkvkd++sGn++stnipevkqsvalvraq+eaenpiikWfGP+eykPmsf+
  CCD22190.1 196 ILSQSLLETCRLKILKYDPWLEEAKCVREKKFFNDIIKYYNEGIDPTKVKVKDSMSGNPVSTNIPEVKQSVALVRAQNEAENPIIKWFGPIEYKPMSFT 294
                 *************************************************************************************************** PP

        Mgr1 265 eyLdrleyhLdmlellqekrkskeaskellekikhteeeleelieknkenrekilkkl............................svekektkekklp 335
                 eyLdrleyhLdm++++q+kr   +a++ l+++i+ht+++lee+i+kn+++r+ki+kk+                            s++ e++++++lp
  CCD22190.1 295 EYLDRLEYHLDMFDFFQKKR---AANALLWNSITHTTNDLEEIIRKNEAARKKICKKFeknkpsahqkhlqdllpdppltllpptpSADGEAASSQMLP 390
                 ********************...9999**********************************************************99999********* PP

        Mgr1 336 lsskrkeasrgiildedvkspediDleeiwslydPWlnLaLdtsLsikflPtv 388
                  + +r    ++i+ld++ +++++iDl+e+w+l+dPW+nL+L+tsLsikf+Ptv
  CCD22190.1 391 PTLNR----NSIVLDQSLQHSKEIDLKEFWRLHDPWMNLGLETSLSIKFIPTV 439
                 98888....9******************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3444.15
//
Query:       CCD22191.1  [L=523]
Description: hypothetical protein NDAI_0A00310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-58  193.5   2.9    5.9e-30  103.3   0.2    3.8  4  Thioredoxin    Thioredoxin
    5.2e-26   91.7   6.3    5.6e-20   72.0   1.7    4.0  4  Thioredoxin_6  Thioredoxin-like domain
    1.2e-09   37.9   0.2    6.4e-05   22.4   0.0    2.7  3  OST3_OST6      OST3 / OST6 family, transporter family
    2.5e-07   31.1   0.6     0.0072   16.8   0.0    3.2  3  Thioredoxin_2  Thioredoxin-like domain
    9.7e-07   28.9   0.0       0.04   14.1   0.0    2.8  2  Thioredoxin_7  Thioredoxin-like
      3e-06   27.5   0.3       0.36   11.2   0.0    4.2  4  Thioredoxin_8  Thioredoxin-like
    2.8e-05   24.0   0.3      0.019   14.9   0.0    2.9  2  AhpC-TSA       AhpC/TSA family
     0.0073   16.1   0.8        2.4    7.9   0.0    2.8  3  Thioredoxin_9  Thioredoxin
     0.0081   15.9   0.1       0.77    9.5   0.0    2.6  2  Redoxin        Redoxin
  ------ inclusion threshold ------
      0.027   14.6   0.1      0.055   13.6   0.1    1.5  1  DUF1539        Domain of Unknown Function (DUF1539)


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   0.2   3.3e-33   5.9e-30       2     101 ..      34     135 ..      33     137 .. 0.97
   2 ?   -2.4   0.0       2.6   4.7e+03       6      24 ..     148     166 ..     144     167 .. 0.85
   3 ?    2.7   0.0     0.071   1.3e+02      39      81 ..     277     320 ..     272     343 .. 0.83
   4 !   85.4   0.0   1.2e-27   2.2e-24       2     102 ..     379     485 ..     378     486 .. 0.92

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 3.3e-33
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE..EEEEEESS-HHHH CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd.kvklakvdvdenedlakkyevegiPtlklfkngk..evkkyegarekek 96 
                  v++ltk++F + +++ + l+l eF+ApwCghCk+laPe+ k+a el+d ++ l+++d++e+++l+ +ye+ g+P lk+fkn++  + k+y+gar++e+
   CCD22191.1  34 VIKLTKDTFADFIQE-NPLFLAEFFAPWCGHCKHLAPEYVKAAAELEDkNIPLVQIDCTEEQELCMEYEIPGYPSLKVFKNNDpkNTKDYQGARSAES 130
                  7899***********.********************************9*********************************99999*********** PP

                  HHHHH CS
  Thioredoxin  97 laafl 101
                  +++++
   CCD22191.1 131 IVSYM 135
                  **998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.6
                  SHHHHHHHHTTTSSEEEEE CS
  Thioredoxin   6 tkenFeeevakekklvlve 24 
                  t+++ ++ v+++ ++v+v+
   CCD22191.1 148 TDSELQDIVQNATQPVIVD 166
                  7788999999999**9997 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.071
                  HHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-S.SSSEEEEEET CS
  Thioredoxin  39 eleklaeelkdkvklakvdvdenedlakkyeve.giPtlklfkn 81 
                  ++++l +++++ + ++ +d  +   +a++++ + ++P + +   
   CCD22191.1 277 FFTELGKKYRGSLNFVGLDSRKYGRHAENLNMKeQFPLFAIHDM 320
                  58899*************************99636888877654 PP

  == domain 4  score: 85.4 bits;  conditional E-value: 1.2e-27
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT......TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE..EEEEEESS CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd......kvklakvdvdenedlakkyevegiPtlklfkngk..evkkyega 91 
                  v +l+ +++++ v+++kk+vlv++yApwCghCk+laP +e+la+ ++       kv +a+vd+++n    +++++eg+Pt++l+++gk  e+ +++ +
   CCD22191.1 379 VFKLVGTTHDKIVSDKKKDVLVKYYAPWCGHCKRLAPIYEELADVYASdkkassKVLIAEVDATAN--DISDLNIEGYPTIILYPAGKnaEPVTFTSQ 474
                  67788999************************************99988999999********999..57899***************7778889999 PP

                  -HHHHHHHHHH CS
  Thioredoxin  92 rekeklaaflk 102
                  r+ + + +flk
   CCD22191.1 475 RTLDGFLKFLK 485
                  99999999987 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.56     1e+03      78     101 ..      33      55 ..      30      60 .. 0.80
   2 !   15.2   0.0   8.2e-06     0.015      11      93 ..      70     158 ..      62     170 .. 0.77
   3 !   72.0   1.7   3.1e-23   5.6e-20       8     166 ..     172     326 ..     165     340 .. 0.81
   4 ?    3.3   0.0     0.037        66      32      75 ..     444     488 ..     422     493 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.56
                    SEEE-SHHHHHHHHTSS--EEEEE CS
  Thioredoxin_6  78 lvreltpenaeelfeeglppllll 101
                     v +lt++++ ++++e+ p++l+ 
     CCD22191.1  33 AVIKLTKDTFADFIQEN-PLFLAE 55 
                    68899999999999999.767664 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 8.2e-06
                    HHHHHTTT-T.T....SEEEEE--HHHHHHTT--S.SEEEEEET.TTTEEEEEETHT--HHHHHHHHHHH---SEEE-SHHH.HHHHHTS CS
  Thioredoxin_6  11 iFekvakelkgd....vrfgvtkskevadklgvke.pavllfrk.fdeekvkydgekitvddlkkfieknslplvreltpen.aeelfee 93 
                    ++ k+a+el+ +    v+  +t + e++ ++++++ p++++f++ + +++ +y+g+  +++++++ + k+slp v+++  ++ ++++ ++
     CCD22191.1  70 EYVKAAAELEDKniplVQIDCTEEQELCMEYEIPGyPSLKVFKNnDPKNTKDYQGA-RSAESIVSYMIKESLPAVQQVGTDSeLQDIVQN 158
                    6777777777557666777789999******************8344566678887.8*****************999744325555555 PP

  == domain 3  score: 72.0 bits;  conditional E-value: 3.1e-23
                    HHHHHHHHTTT-T.TSEEEEE..--HHHHHH...TT--SSEEEEEETTTTEEEEEETH....T--HHHHHHHHHHH---SEEE-SHHHHHHHHTSS CS
  Thioredoxin_6   8 eseiFekvakelkgdvrfgvt..kskevadk...lgvkepavllfrkfdeekvkydge....kitvddlkkfieknslplvreltpenaeelfeeg 94 
                    +  +F+ va++l++d++f  +  ++k va++   + ++e++ ++f++          +      +++ l+++++ + lp+++e++   ++++ e++
     CCD22191.1 172 LNATFYDVAAKLSSDYTFISYvtSNKTVAKDlslYLPSEDTPIVFNG----------DlnklAKNATQLQEWLKVEALPYFGEIDGSVFQTYVESD 257
                    5689***********99976500444455555545555566666666..........44433339******************************* PP

                    --EEEEEEE-TTSTTHHHHHHHHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEEESSSS-EE CS
  Thioredoxin_6  95 lppllllflkkddeeteklkkaiekvakefkdkinfaladaksfkrpleylglsssdlPvivivdsashkyk 166
                    +p l ++f++ +dee++k+ + ++++ k++++++nf+ +d  +++r  e l+++ ++ P ++i d++++ ++
     CCD22191.1 258 IP-LAYFFYT-SDEEKSKYTEFFTELGKKYRGSLNFVGLDSRKYGRHAENLNMK-EQFPLFAIHDMKKNLKY 326
                    **.8888887.689****************************************.**********9987543 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.037
                    HHHHHTT--S.SEEEEEET.TTTEEEEEETHT--HHHHHHHHHHH- CS
  Thioredoxin_6  32 evadklgvke.pavllfrk.fdeekvkydgekitvddlkkfiekns 75 
                    +  ++l++++ p+++l+ + ++ e+v+++ +  t d   kf+++n 
     CCD22191.1 444 NDISDLNIEGyPTIILYPAgKNAEPVTFTSQ-RTLDGFLKFLKENG 488
                    44677999999******98355689999997.89***999999985 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   3.9e-05      0.07      11     131 ..      32     133 ..      21     164 .. 0.75
   2 ?   -2.4   0.0       1.3   2.3e+03      86     124 ..     248     283 ..     241     317 .. 0.66
   3 !   22.4   0.0   3.6e-08   6.4e-05      46     135 ..     407     486 ..     374     494 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.9e-05
   OST3_OST6  11 ngviklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpk 109
                 + vikl+++++ ++++ + +  ++ ++        C  C++++pe+ + a     +      ++  +++d  e +++ +++++   P l +f+ ++ pk
  CCD22191.1  32 SAVIKLTKDTFADFIQ-ENPLFLAEFFAP-----WCGHCKHLAPEYVKAAAELEDK------NIPLVQIDCTEEQELCMEYEIPGYPSLKVFKNND-PK 117
                 5788888888888884.666666655543.....5*************99999888......8*****************************9954.44 PP

   OST3_OST6 110 eskkkdtydfsrggfdaealak 131
                    + ++y+   g  +ae++++
  CCD22191.1 118 ---NTKDYQ---GARSAESIVS 133
                 ...233333...2334554444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.3
   OST3_OST6  86 dvFqklglnsaPhlllfppkkgpkeskkkdtydfsrggf 124
                 +vFq++  + +P  ++f  ++++k   +k+t  f++ g+
  CCD22191.1 248 SVFQTYVESDIPLAYFFYTSDEEK---SKYTEFFTELGK 283
                 688998889999999999977666...444444444444 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 3.6e-08
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpkeskkkdtydfsrggfdaealakfise 135
                 C  C+ ++p +e +a+ + +d k+ s+k++ a+vd   +    ++l+++  P ++l+p+ k ++   ++ t+  +r   + + + kf++e
  CCD22191.1 407 CGHCKRLAPIYEELADVYASD-KKASSKVLIAEVDATAN--DISDLNIEGYPTIILYPAGK-NA---EPVTFTSQR---TLDGFLKFLKE 486
                 9********************.99**********99655..579***************44.33...566666554...55556666655 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00024      0.43       8     105 ..      52     131 ..      46     135 .. 0.78
   2 ?   -1.4   0.0       1.8   3.2e+03      65      97 ..     218     251 ..     172     263 .. 0.65
   3 !   16.8   0.0     4e-06    0.0072       3      90 ..     393     464 ..     391     483 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
  Thioredoxin_2   8 vlvvftdpdCpyCkklkkelkel.ddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgk.eivarlpGyv 100
                    +l+ f +p+C+ Ck l  e  +   ++         +++ ++  v+i+c++e+           el  +y++ g P++  f + + +    ++G+ 
     CCD22191.1  52 FLAEFFAPWCGHCKHLAPEYVKAaAEL---------EDK-NIPLVQIDCTEEQ-----------ELCMEYEIPGYPSLKvFKNNDpKNTKDYQGAR 126
                    567799************888882333.........333.699********98...........5************7636666698888899998 PP

  Thioredoxin_2 101 paeel 105
                    +ae +
     CCD22191.1 127 SAESI 131
                    88866 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
  Thioredoxin_2  65 d....ieenvelark.ygvrgtPtivfldgkeivarlp 97 
                    +    +++n   +++ ++v+++P++  +dg+    + +
     CCD22191.1 218 GdlnkLAKNATQLQEwLKVEALPYFGEIDGS----VFQ 251
                    1444466677777775789999988888887....444 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 4e-06
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgk 90 
                     ++k vlv +++p+C+ Ck+l    +el dv       + k+s++  +++++ +++                 ++++g Pti+ ++ gk
     CCD22191.1 393 DKKKDVLVKYYAPWCGHCKRLAPIYEELADVYAS----DKKASSKVLIAEVDATAND-------------ISDLNIEGYPTIIlYPAGK 464
                    5799************************666222....3888999999999999998.............4789*******88466665 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00012      0.22      17      80 ..      48     110 ..      46     112 .. 0.77
   2 !   14.1   0.0   2.2e-05      0.04      15      81 ..     393     460 ..     389     462 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                    T--EEE.EE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT---SSEEEE CS
  Thioredoxin_7  17 gkpvlv.ffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanileldeqgvPvvaf 80 
                    + p+++  f a wc++C+ l+ +  ++   +++ ++++ l+++d te+++  +e++  g+P + +
     CCD22191.1  48 ENPLFLaEFFAPWCGHCKHLAPEYVKA--AAELEDKNIPLVQIDCTEEQELCMEYEIPGYPSLKV 110
                    5678887899**********9998877..444346************998555555577887655 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.2e-05
                    HHT--EEEEE--TT-HHHHHHHHHHHH-HHH...HH.HHHT-EEEEESS--S-GGG.-TT---SSEEEEE CS
  Thioredoxin_7  15 ergkpvlvffgaswcftCqalerdflsdeev...kaalaekfvllrvdvterdanileldeqgvPvvafl 81 
                     ++k+vlv   a wc++C++l+   ++  +v   ++ +++k+    vd t +d    +l  +g+P+++++
     CCD22191.1 393 DKKKDVLVKYYAPWCGHCKRLAPIYEELADVyasDKKASSKVLIAEVDATANDI--SDLNIEGYPTIILY 460
                    589*****************9655555444400033344444444444443333..23334678888776 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00044       0.8       8      52 ..      56      99 ..      50     101 .. 0.89
   2 ?    2.3   0.0      0.12   2.2e+02      63      92 ..      85     114 ..      79     116 .. 0.82
   3 ?   -0.0   0.0      0.64   1.1e+03       7      45 ..     262     298 ..     257     330 .. 0.60
   4 !   11.2   0.0    0.0002      0.36       4      32 ..     398     429 ..     395     495 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00044
                   E--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHH CS
  Thioredoxin_8  8 fgaswcppckaftpklkelyeklkkkkkveivyvsldkkeeefek 52
                   f+a wc +ck+  p+  +   +l+ +k++ +v + + +++e + +
     CCD22191.1 56 FFAPWCGHCKHLAPEYVKAAAELE-DKNIPLVQIDCTEEQELCME 99
                   99*********************8.7********99999887665 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.12
                    E.EE-TT-HHHHTT-S--TT-SEEEEE-TT CS
  Thioredoxin_8  63 svpfddkkrnklkkkynvkaiPtlvvldkn 92 
                     v+ d  + ++l+ +y++ ++P+l v ++n
     CCD22191.1  85 LVQIDCTEEQELCMEYEIPGYPSLKVFKNN 114
                    5666777899**************998876 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.64
                    EE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS CS
  Thioredoxin_8   7 yfgaswcppckaftpklkelyeklkkkkkveivyvsldk 45 
                    yf+ + +++  ++t+  +el +k++    +++v + + k
     CCD22191.1 262 YFFYTSDEEKSKYTEFFTELGKKYR--GSLNFVGLDSRK 298
                    4444455555667777777777776..777777666544 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 0.0002
                    EEEEE--SSSHHHHHHHHHHHHHHHHHH...H CS
  Thioredoxin_8   4 vlLyfgaswcppckaftpklkelyeklk...k 32 
                    vl+ ++a wc +ck+  p   el + +    k
     CCD22191.1 398 VLVKYYAPWCGHCKRLAPIYEELADVYAsdkK 429
                    899************99999999998884431 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05     0.019      20      71 ..      42      94 ..      22     127 .. 0.84
   2 !    6.2   0.0     0.005         9      24      57 ..     394     426 ..     370     451 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
                CHHH.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH CS
    AhpC-TSA 20 lsdy.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspe 71
                ++d+ + +p+ l  + + wc +C++ +p++ k++ e++++++ ++ + +++++
  CCD22191.1 42 FADFiQENPLFLAEFFAPWCGHCKHLAPEYVKAAAELEDKNIPLVQIDCTEEQ 94
                567777788888866666****************************9998776 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.005
                 TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCC CS
    AhpC-TSA  24 kgkpvvlffypkdwcpvCttelpalaklyeefke 57 
                 k+k v++  y+  wc +C++ +p +++l++ +++
  CCD22191.1 394 KKKDVLVKYYAP-WCGHCKRLAPIYEELADVYAS 426
                 334677777888.*******99888877766653 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0014       2.4      48      91 ..      56     101 ..      11     120 .. 0.79
   2 ?   -3.7   0.0       5.4   9.6e+03      16      36 ..     333     353 ..     329     369 .. 0.67
   3 !    5.6   0.0    0.0072        13      32      68 ..     386     422 ..     376     438 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0014
                    E--TT-HHHHHHHH.HHHHHHHH-.TTEEEEEE-HHHHHHHTTTTT CS
  Thioredoxin_9  48 ltedwCgDaavnvP.vlakiaeln.pnievkillrdenlelmdqyl 91 
                    + ++wCg + +  P +++++ael  +ni++  +   e++el  +y 
     CCD22191.1  56 FFAPWCGHCKHLAPeYVKAAAELEdKNIPLVQIDCTEEQELCMEYE 101
                    678***********77888887752589998888888888888775 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.4
                    HHHHHHHHHHHHHH---HHHH CS
  Thioredoxin_9  16 kermlrvykkvelseeteeki 36 
                    +e++ ++ ++++++++++ ++
     CCD22191.1 333 EEKFDQLKDTISIETKDISRL 353
                    577888888888888877743 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0072
                    -HHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHH CS
  Thioredoxin_9  32 teekiksiekklkilvltedwCgDaavnvPvlakiae 68 
                    t +ki s +kk  ++   ++wCg + +  P+ +++a+
     CCD22191.1 386 THDKIVSDKKKDVLVKYYAPWCGHCKRLAPIYEELAD 422
                    5556655555544555789************999886 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.025        46      35      64 ..      56      84 ..      25     102 .. 0.79
   2 !    9.5   0.0   0.00043      0.77      27      75 ..     394     442 ..     376     486 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.025
                EESTTT-HHHHHTHH.HHHTHHHHHHCSTTT CS
     Redoxin 35 fvpgafcPtCsaehp.yleklaellkekgvd 64
                f++  +c+ C++ +p y++  ael ++k++ 
  CCD22191.1 56 FFAP-WCGHCKHLAPeYVKAAAEL-EDKNIP 84
                5555.**********888887777.988875 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00043
                 TTSEEEEEEESTTT-HHHHHTHH.HHHTHHHHHHCSTTTEEEEEESSSHH CS
     Redoxin  27 kgkkvvvnfvpgafcPtCsaehp.yleklaellkekgvdvvavvadndaf 75 
                 k+k v+v  ++  +c+ C++ +p y+e  +  +++k  +  +++a  da 
  CCD22191.1 394 KKKDVLVKYYAP-WCGHCKRLAPiYEELADVYASDKKASSKVLIAEVDAT 442
                 566777777777.**********555444555556666666666655555 PP

>> DUF1539  Domain of Unknown Function (DUF1539)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1     3e-05     0.055      47     118 ..     357     426 ..     319     434 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3e-05
     DUF1539  47 ylskkesseveseeaqalfrstlkkllelLkdptiskekKlellkyiasyadrckptWvevifrelqaiynt 118
                  ++ k++  v+se++ ++ +s ++kl+ + +d+ +s +kK  l+ky a ++ +ck +    i  el  +y +
  CCD22191.1 357 FVKGKANAIVKSEPEPEVQESNVFKLVGTTHDKIVSDKKKDVLVKYYAPWCGHCKRL--APIYEELADVYAS 426
                 345567778899******************************************975..5677777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       886  (0.0494171); expected 358.6 (0.02)
Passed bias filter:                      595  (0.0331865); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3805.13
//
Query:       CCD22192.1  [L=497]
Description: hypothetical protein NDAI_0A00320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-76  257.1   0.0    1.9e-76  256.6   0.0    1.2  1  Hexokinase_2  Hexokinase
      7e-73  244.8   0.0    1.1e-72  244.1   0.0    1.3  1  Hexokinase_1  Hexokinase


Domain annotation for each model (and alignments):
>> Hexokinase_2  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.6   0.0   2.1e-80   1.9e-76       2     240 .]     243     496 ..     242     496 .. 0.92

  Alignments for each domain:
  == domain 1  score: 256.6 bits;  conditional E-value: 2.1e-80
                   EEEEESSSEEEEEEEEGGG-GGGTTTS......-TTSEEEEE--GGGTTTT-SS-..--HHHHHHHHH.SSSTTS-HHHHCCSHHHHHHHHHHHHHH CS
  Hexokinase_2   2 iGlIlGtGtNacyleklsnieklegkk......eksgemviNtEwgafgdegklpllrtkyDkeldee.spnpgeqlfEkmiSGmYLGelvrlvlld 91 
                   iG+I+GtGtN+cy+e+++ni kl ++       e++++mv+NtEwg+f++e k  l++tkyD ++d++ s npg++lfEk +SGmYLGe++r+vl+d
    CCD22192.1 243 IGCIFGTGTNGCYMEEIKNIVKLPADVkkklldEGKTHMVVNTEWGSFDNELK-VLPTTKYDVDIDQKySANPGFHLFEKRVSGMYLGEVLRNVLVD 338
                   9**********************9998999******************98555.456*********9967*************************** PP

                   HHC.TSSS.....C.......CCCSTTSS-THHHHHHHC--BTT-HHHHHHHHHCCS---.-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-.. CS
  Hexokinase_2  92 lieekllf.....kgkse...klktpysldteflseieedesedleevrevleellglesvteedleivrevceavsrRaarlvAagiaallkklgk 180
                   l++++l+f     ++  +   +l+tp++ld+e+ls+ie d+s++l+e++  l + l+l + t ++++ ++++++a+srR+a+l+A+ iaa++ k+g 
    CCD22192.1 339 LHKRGLIFaqyrtEK--QlphRLQTPFELDSEVLSHIEIDDSTGLRETELSLLQSLRLPT-TPSERHEIQRLVRAISRRSAYLAAVPIAAIILKTGT 432
                   ***999998775433..1457****************************9999999**88.9********************************777 PP

                   ......SSEEEEEESHHHHHSTTHHHHHHHHHHHH.HT--S.-SEEEEE---TTTHHHHHHHHH CS
  Hexokinase_2 181 ...eekekvtvgvdGslyekypkfrerlqealrel.lgeepekkvklklaedGsgvGAAliaav 240
                      + + +v+vg+dGs++e+yp+fr++l++al    lg e e+k+++kl++dGs  GAAl+a+v
    CCD22192.1 433 lnkRYHGEVEVGCDGSVIEYYPGFRSMLRHALALSpLGAEGERKIHIKLSKDGSSAGAALCALV 496
                   6666677888**********************777***************************86 PP

>> Hexokinase_1  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.1   0.0   1.3e-76   1.1e-72       2     199 .]      18     225 ..      17     225 .. 0.96

  Alignments for each domain:
  == domain 1  score: 244.1 bits;  conditional E-value: 1.3e-76
                   HHHHHHHH---HHHHHHHHHHHHHHHHHHHS.S......STS--EE----S---S--EEEEEEEEESSSEEEEEEEEEESSS-EEEEEEEEE--GGG CS
  Hexokinase_1   2 leeilkqfelsdeklkelvdrfleemekgLakek.....eslkmlptyvtrlPtGkekGtylAlDlGgtnlRvllveLlgeskveitqekykipeel 93 
                   ++e++++fe++ ekl +l+++f+e+mekgL+ ++     ++l+m+p++vt++P+G+ekG  lA DlGgtn+Rv++veL+g+++++++q k+kipeel
    CCD22192.1  18 VDELVAEFEVTPEKLDQLTAHFIEQMEKGLKPTEdkatdKGLPMIPSFVTGTPNGTEKGILLAADLGGTNFRVCSVELHGDHTYTMEQMKSKIPEEL 114
                   7999***************************877777644499****************************************************** PP

                   GGS...BHHHHHHHHHHHHHHHHHHH....ST..T-.S-EEEEEEE-SSEE-SBTT--EE-S--TT---TT-TTSBHHHHHHHHHHHTT-S.EEEEE CS
  Hexokinase_1  94 ktg...taeeLFdfiakciaefleeegeekkeekee.eelplGftFSFPveqtsldegtlirwtKgfaikdvegkdvvqllqealerkglp.vkvva 185
                    ++   t+e+LF ++a++  +f+++ + e+ e   + ++l++GftFS+Pv+qtsl++gtlirwtKgf+i+d++g+dvvql q++l++++lp ++vva
    CCD22192.1 115 LDDenaTSEQLFGYLARRTLAFMKKFHPEQIEGGISaKPLRMGFTFSYPVDQTSLNSGTLIRWTKGFKIADTIGRDVVQLYQDELKKNELPmINVVA 211
                   **9999***********************98876668*****************************************************77***** PP

                   EE-HHHHHHHHHHH CS
  Hexokinase_1 186 lvNDTvgtllslaY 199
                   l+NDTvgt+ls++Y
    CCD22192.1 212 LTNDTVGTFLSHCY 225
                   ************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.33s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3314.97
//
Query:       CCD22193.1  [L=397]
Description: hypothetical protein NDAI_0A00330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.3e-129  432.3   0.0   1.5e-129  432.1   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.1   0.0  8.6e-134  1.5e-129       1     342 []      16     368 ..      16     368 .. 0.97

  Alignments for each domain:
  == domain 1  score: 432.1 bits;  conditional E-value: 8.6e-134
                   CCCS-EEETTEEESSSEEE----S-TTTTTCS.HH.HHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EE CS
  Oxidored_FMN   1 kLFkPikignmtLknRivmapmtrlraldkgnvle.dlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskv 96 
                   kLFkP+k+gn+t+++R+vmap+tr+ra+ +g v++ d+aaeyy qr+++++t+iite+++++++sgg+dnapgiw+ eqie+w k+++ +h+ngs+v
    CCD22193.1  16 KLFKPLKVGNTTVEHRVVMAPLTRMRAHFPGHVPNkDWAAEYYDQRSKRKGTMIITEGVNPSEQSGGYDNAPGIWSPEQIEQWSKIFDRIHKNGSFV 112
                   79*********************************************************************************************** PP

                   EEEEE--GGGS..SCSTCEC....SS.ESSSSSTTT-.....S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT CS
  Oxidored_FMN  97 vvqlwhlGreakseyladqe..vdspsdpvaldaqee....esaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspks 187
                   + qlw+lGr+a+ ++la+++  +ds+sd+ ++d++++    +s++++  + +tk+eikq+++++v+ Ak+a+eAg+DgVeih+an+YLlnqFl+p s
    CCD22193.1 113 WPQLWVLGRQAFPDSLARDGlrYDSASDNLYMDDEMKeraiKSNNPQ--HGITKSEIKQYVKDYVQGAKNAVEAGADGVEIHSANSYLLNQFLDPIS 207
                   *******************999*************999999999999..************************************************ PP

                   ----STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHH...HHHHHHHCHCCEEEEEEETT-SSSSSTTS-T...TTTHHHC CS
  Oxidored_FMN 188 nkrtDeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaet...aqkivllkelekrlkdgkklalvhaaeprkr...gagsvrt 278
                   n+rtDeygGs+enRarF+levvda  eavg+ervg+RlSp + ++ ++++++    aq++++++elekr+k gk++a++h++epr++   + g+++ 
    CCD22193.1 208 NHRTDEYGGSIENRARFALEVVDALIEAVGHERVGIRLSPWGRYGGMSGGSDPtllAQYCYVVGELEKRAKLGKRIAYIHLVEPRVTdwsDEGKKVP 304
                   ****************************************************99*******************************983223567777 PP

                   CTTHHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCGG CS
  Oxidored_FMN 279 eqekntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpln 342
                   e +++++f++++wk+p+i++g++  + +a   v  ++++L++ gR+f++ pdlv++l kglpln
    CCD22193.1 305 EDDGTNDFIYSIWKGPVIRAGMFPANADAITKVVANDQTLIGAGRYFISTPDLVDRLDKGLPLN 368
                   777**********************9988889999**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2702.27
//
Query:       CCD22194.1  [L=948]
Description: hypothetical protein NDAI_0A00340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-16   59.1   3.3     0.0052   17.6   0.0    6.5  6  WD40         WD domain, G-beta repeat
    1.7e-08   34.7   0.0       0.25   11.7   0.1    5.6  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     6e-06     0.054       8      38 .]     418     453 ..     411     453 .. 0.73
   2 !    6.2   0.0    0.0023        21       5      28 ..     462     486 ..     458     492 .. 0.84
   3 ?    4.0   0.3     0.011     1e+02      12      38 .]     603     633 ..     591     633 .. 0.77
   4 ?   -2.5   0.0       1.3   1.2e+04      13      38 .]     713     738 ..     703     738 .. 0.69
   5 !   17.6   0.0   5.8e-07    0.0052       6      38 .]     855     890 ..     851     890 .. 0.78
   6 !   10.6   0.4   9.4e-05      0.84      17      38 .]     912     944 ..     894     944 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6e-06
                 ESS.SSEEEEEEETTSSEEEE.....EETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlas.....GsdDgtvriWd 38 
                 t     ++ l+fspdg++las     G  D+++ i+d
  CCD22194.1 418 TQNtEEIWYLQFSPDGKYLASaaadsG-TDRKIFIYD 453
                 5453348999*********98333323.4******98 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0023
                 EEEESS.SSEEEEEEETTSSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasG 28 
                 ++l G  +++  l+fspd+++l+s+
  CCD22194.1 462 KELGGNkQCILYLSFSPDSKYLVSC 486
                 56778866699999********997 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.011
                 S.EEEEEEETTSSE...EEEEETTSEEEEEE CS
        WD40  12 s.vtslafspdgaw...lasGsdDgtvriWd 38 
                 + ++++++ + +     +a Gs D+ v i+d
  CCD22194.1 603 PrIWCCDWFHTKEHygkFAVGSPDRDVVIYD 633
                 3699**75555555788788*********98 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.3
                 EEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  13 vtslafspdgawla.sGsdDgtvriWd 38 
                 +++l+ s+d + l+   +  g + ++d
  CCD22194.1 713 IHDLKISRDDKCLIlMTH-QGIIEVYD 738
                 889998888888532236.77777766 PP

  == domain 5  score: 17.6 bits;  conditional E-value: 5.8e-07
                 EEESS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ss...vtslafspdgawlasGsdDgtvriWd 38 
                 ++ G+ +    ++s+ f  +++++asGs+Dg+v+iWd
  CCD22194.1 855 KFIGQkQEqfiIRSC-FGYNNKLVASGSEDGKVYIWD 890
                 566774225656766.899999**************9 PP

  == domain 6  score: 10.6 bits;  conditional E-value: 9.4e-05
                 E..........EETTSSE.EEEEETTSEEEEEE CS
        WD40  17 a..........fspdgaw.lasGsdDgtvriWd 38 
                 +          ++p  +  +asG+dDg + iW+
  CCD22194.1 912 KrlgmncnvvvWNPKCKSmFASGGDDGLIVIWN 944
                 4444445555544444442789**********8 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00013       1.2      36      75 ..     419     462 ..     412     477 .. 0.76
   2 ?    2.5   0.0     0.021   1.8e+02      36      72 ..     466     502 ..     458     513 .. 0.85
   3 ?    0.4   0.0      0.09     8e+02      53      77 ..     620     644 ..     609     649 .. 0.87
   4 ?    2.5   0.0      0.02   1.8e+02      40      69 ..     712     741 ..     702     759 .. 0.88
   5 !   11.7   0.1   2.8e-05      0.25      35      84 ..     859     908 ..     830     926 .. 0.75
   6 ?   -2.2   0.0      0.59   5.3e+03      41      68 ..     918     946 ..     905     947 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00013
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdg....evrlldaesgkvvhs 75 
                  ++ +e+  L+++pdgk La a +d+    ++ ++d+e+   v +
   CCD22194.1 419 QNTEEIWYLQFSPDGKYLASAAADSgtdrKIFIYDVENDFQVYK 462
                  6789999*************998865555899999999766655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.021
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  ++++ +  L+++pd k L+    + + +++d++s+ +
   CCD22194.1 466 GNKQCILYLSFSPDSKYLVSCPFNEAANIYDIHSKGT 502
                  6789999************************998765 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.09
  ANAPC4_WD40  53 Lavaysdgevrlldaesgkvvhsls 77 
                  +av+  d  v ++d+ s+k++ ++ 
   CCD22194.1 620 FAVGSPDRDVVIYDIFSKKIIYKMA 644
                  699*****************99875 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.02
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaes 69 
                  ++++L+ + d+k L   +++g ++++d+++
   CCD22194.1 712 RIHDLKISRDDKCLILMTHQGIIEVYDISK 741
                  68899*********************9875 PP

  == domain 5  score: 11.7 bits;  conditional E-value: 2.8e-05
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekav 84 
                  +k+++ +   ++  ++kl a + +dg+v + d  +g++++ l++++ +++
   CCD22194.1 859 QKQEQFIIRSCFGYNNKLVASGSEDGKVYIWDRIKGNIISVLNAHNAQTI 908
                  35555566668999******************************999844 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 0.59
  ANAPC4_WD40  41 vrsLaWkpdgk.lLavaysdgevrlldae 68 
                   + + W+p+ k ++a + +dg + + +++
   CCD22194.1 918 CNVVVWNPKCKsMFASGGDDGLIVIWNVN 946
                  56678998754278999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (948 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 6264.42
//
Query:       CCD22195.1  [L=573]
Description: hypothetical protein NDAI_0A00350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     2e-149  498.3  21.3   2.5e-149  498.0  21.3    1.1  1  ATG22         Vacuole effluxer Atg22 like
  ------ inclusion threshold ------
       0.36   10.0   3.2       0.42    9.8   1.5    1.9  2  Bac_export_2  FlhB HrpN YscU SpaS Family


Domain annotation for each model (and alignments):
>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  498.0  21.3  2.8e-153  2.5e-149       2     478 .]      19     557 ..      18     557 .. 0.97

  Alignments for each domain:
  == domain 1  score: 498.0 bits;  conditional E-value: 2.8e-153
       ATG22   2 tkkellgWylyafaaevfavvavgsfvPllleqlarenGvllsdksapCsakgde.........qcvvkflg..ieidtaSfvlytfslsvllqavvvi 89 
                 tk++++gWy+y+f++e+f+v av++++Pllle++ar nGv  +++s pC ++++          +cvv +++  + idt+Sf ly+fs+svl+q+v+vi
  CCD22195.1  19 TKRNIKGWYFYCFSSEPFVVSAVATYIPLLLEKFARLNGVKINNHSIPCIDPHTLynlssndtsKCVVPIFNdrMFIDTSSFPLYVFSISVLFQTVLVI 117
                 89**************************************************98899***************99************************* PP

       ATG22  90 slsglADyg...nyrknlLlafaligslstilfllvtpkkYllgavlyivsntcfgaslvllnsfLPllvredpelqeaeeeeeeeeessetaeeeesk 185
                 ++sgl+D     +++k+ L++f++igs+sti ++ +++++ +++ +lyi++n cfg+++v++ns+LP l+++  ++                 + ++++
  CCD22195.1 118 TVSGLVDLRdslKFKKWTLITFGVIGSISTIFISRLNSSQLYTLPTLYILANSCFGVINVVGNSLLPRLIHDSIKF---------------LPHLKKED 201
                 ******9988889*********************************************************999887...............44456666 PP

       ATG22 186 elklstriSslGlaigylgailvqiisilivialgsta.......................tfslrlalllvGlwWliftipaalllkkrp.gpplp.. 258
                   +++t iS++G+++gy +a++vqiisi++v +++ ++                         ++++ +l+vG+wW+++++p+++ll +    + ++  
  CCD22195.1 202 TDNQTTMISGRGASLGYSSALVVQIISIFLVKNIRDNNakliasanatstslsqpiinvdpLKDIQIPVLFVGIWWFFWQLPMIWLLSDLTfLSTSTss 300
                 7789******************************99989*********************999**************************9973333368 PP

       ATG22 259 ....................................kglsyliygwkslgrtlkqarklkdvllfLvawfllsdgiatvsstavlfaktelkmstakli 321
                                                     + +  l ygw sl++ +k+ar lkdv++fL++wf++sd+i+t++sta+lf +t+l mst +li
  CCD22195.1 301 hvnressasnliqsqsqsqsqspspspsrpspystkEEEFSLSYGWLSLWESFKHARLLKDVMIFLLGWFIISDSITTINSTAILFSRTQLDMSTLQLI 399
                 9********************************99877789********************************************************** PP

       ATG22 322 llsivaviaavlGaflwp.lvsrrlnlktkktllaiivlfeliplyGllGiilgkiGlkqpwEfyvlavvyglvlgglssysRslfseLiPrGkEaaFF 419
                 ++si+++i+a++Gaf++p ++s+r++ ++kk+ll++i+++++ip+yG+lG+++++iGlk+++E+++la++ygl+lggls++sRslf+ +iP+GkE++FF
  CCD22195.1 400 IVSILTMISAMIGAFMVPqFLSKRFHWSPKKILLFLILWATFIPFYGILGFFFNSIGLKEKFEMFLLAIWYGLSLGGLSAVSRSLFTLIIPKGKESTFF 498
                 *************************************************************************************************** PP

       ATG22 420 sLyaitdkgssvigplivglItDrtgnirsafvflavLlvvplpllllvdvergrreae 478
                 s+++itdkgss++gp+++gl+tD+t+nir++f++l+ Ll+++lp++  +++erg+rea+
  CCD22195.1 499 SMFSITDKGSSIVGPFLIGLVTDKTHNIRYSFYLLFTLLILSLPIIKSLNLERGKREAQ 557
                 *********************************************************85 PP

>> Bac_export_2  FlhB HrpN YscU SpaS Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.2      0.11     1e+03      82     161 ..     171     249 ..     103     260 .. 0.59
   2 ?    9.8   1.5   4.7e-05      0.42      89     199 ..     308     426 ..     222     430 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.11
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  82 vlllaallanllqvgflfstkalkpklsklnplkglkrifslrslvellksllkvvlvgavaylvlkseleellalaeld 161
                   ++ ++ +++n l  +++    ++ p l+k +   +   ++s r++     s l v +++++++  ++++  +l+a a+++
    CCD22195.1 171 CFGVINVVGNSLLPRLIHDSIKFLPHLKKEDT-DNQTTMISGRGASLGYSSALVVQIISIFLVKNIRDNNAKLIASANAT 249
                   33455555555555666666666666666555.44456777777777777777777777777777777777777666655 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 4.7e-05
                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXX CS
  Bac_export_2  89 lanllqvgflfstkalkpklsklnplkglkrifslr....slvellks..llkvvlvgavaylvlkseleellala..eldleaalelllslllkll 177
                   ++nl+q +   + ++ +p  s+ +p +  +  fsl+    sl+e +k   llk v++++++++++++++ ++ ++a    +++  +++l  +++++l
    CCD22195.1 308 ASNLIQSQSQSQSQSPSPSPSRPSPYSTKEEEFSLSygwlSLWESFKHarLLKDVMIFLLGWFIISDSITTINSTAilFSRTQLDMSTLQLIIVSIL 404
                   789999999999999999999999999988888875333378999985448999*************999998655213334444445555555555 PP

                   XXXXXXXXXXXXXXXXXXXXXX CS
  Bac_export_2 178 llvllallviallDlllqrwef 199
                   +++ +++ ++ +  +l +r+++
    CCD22195.1 405 TMISAMIGAFMVPQFLSKRFHW 426
                   6666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3970.99
//
Query:       CCD22196.1  [L=501]
Description: hypothetical protein NDAI_0A00360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-19   68.5   0.3    8.8e-19   67.3   0.1    1.7  2  La        La domain


Domain annotation for each model (and alignments):
>> La  La domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.77   1.4e+04      29      35 ..     105     111 ..     102     114 .. 0.78
   2 !   67.3   0.1   4.9e-23   8.8e-19       1      58 [.     295     353 ..     295     354 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.77
                 TS---HH CS
          La  29 egwVpls 35 
                  +wVp++
  CCD22196.1 105 TKWVPIK 111
                 57***97 PP

  == domain 2  score: 67.3 bits;  conditional E-value: 4.9e-23
                 HHHHHHHHHHTT-TTT-HHHHHHHTTSTTS---HHHHHTSSHHHHHHS...SHHHHHHHHH CS
          La   1 ilkQvEfYFSdeNLpkDkFLrkkmdkdpegwVplsliasfkrmkkltk...dveliaealr 58 
                 i +Q+E+YFSdeNL+kD++L +k++k  eg+Vplslia+f r+ +++k   +  li++alr
  CCD22196.1 295 IARQIEYYFSDENLSKDTYLVSKLSK--EGYVPLSLIAQFYRIVNMSKyhgNAYLIMAALR 353
                 789**********************9..***************999986666689999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1743  (0.0972168); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 3605.53
//
Query:       CCD22197.1  [L=636]
Description: hypothetical protein NDAI_0A00370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.036   12.5  10.8      0.069   11.6  10.8    1.4  1  TMEM214       TMEM214, C-terminal, caspase 4 activator
        2.3    7.8  11.5        6.9    6.3   6.0    2.4  2  FAM176        FAM176 family
        4.4    6.4   4.9          8    5.6   4.9    1.4  1  Zip           ZIP Zinc transporter
        6.1    7.2  30.5        6.1    7.2   3.0    2.3  2  DUF4604       Domain of unknown function (DUF4604)
        8.5    6.9  10.6        4.2    7.9   3.6    2.4  2  GOLD_2        Golgi-dynamics membrane-trafficking


Domain annotation for each model (and alignments):
>> TMEM214  TMEM214, C-terminal, caspase 4 activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  10.8   1.9e-05     0.069      41     119 ..      42     116 ..      21     163 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.9e-05
     TMEM214  41 plkqvkt.lyeldfekenkkqnkeqvpekstseaeekkksnkkkkkkksekkkeepkekkpktledAlkaidvaelaqqL 119
                 p++q++t  + ++ ++  +k+ k+ + e + +++e++k+++kkkkkkk + k++++k+k  kt++  +k     ++++ L
  CCD22197.1  42 PVSQINTdAFSMGKKEKRNKKVKSLSSEDNDNDNEKEKEKKKKKKKKKKKGKETRQKHKDTKTIDVSIK-----DFSKRL 116
                 555555436888888888888899899988888888888888888888889999999999999986665.....444444 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.0    0.0019       6.9      56      93 ..      56      96 ..      43     128 .. 0.48
   2 ?    4.3   0.2    0.0082        29      66      81 ..     563     579 ..     545     605 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0019
      FAM176 56 kkkkklkeesekasededeeeeeeeedsseseaeeel....s 93
                k+k+++k +s  +sed+d+++e+e+e++++++ +++     +
  CCD22197.1 56 KEKRNKKVKS-LSSEDNDNDNEKEKEKKKKKKKKKKKgketR 96
                2222222222.2244444444444444443333333321212 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0082
      FAM176  66 eka.sededeeeeeeee 81 
                 +k+ + +e+eeeeeeee
  CCD22197.1 563 NKDkTGEEEEEEEEEEE 579
                 22212222222222222 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.9    0.0022         8     108     169 ..      41     103 ..      16     185 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0022
         Zip 108 ektpkkasssssesaakksvsndkveeseek.edhvaeadtdadskeelrngkqeksesekeq 169
                 ++ ++  ++  s  +++k+ +++k+ +se++ +d+++e+++++++k+++++gk+  +++++++
  CCD22197.1  41 DPVSQINTDAFSMGKKEKRNKKVKSLSSEDNdNDNEKEKEKKKKKKKKKKKGKETRQKHKDTK 103
                 444444445555555555555555555555513333333333333333334443333333333 PP

>> DUF4604  Domain of unknown function (DUF4604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  19.7    0.0062        22     105     154 ..      45      94 ..       8     108 .. 0.45
   2 ?    7.2   3.0    0.0017       6.1      46     124 ..     536     608 ..     515     629 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0062
     DUF4604 105 sikekasslaaksskkkkkgkvvgeedeeeedkskakkkekekkkakkkk 154
                 +i+ +a s++ k++++kk+++  +e+ +++++k+k+kkk+k+kkk+k k+
  CCD22197.1  45 QINTDAFSMGKKEKRNKKVKSLSSEDNDNDNEKEKEKKKKKKKKKKKGKE 94 
                 33222233334444444444444444432222222222222222222222 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0017
     DUF4604  46 eeDeaPqVVvlkeGkhlsaeevevekdaakgkekeeeeeeeeegeeaeediefkkpkkasikekasslaaksskkkkk..g 124
                 +e ++P VV l     +s  e+    +++++ +   + eeeee+ee+ee +++ +pk+ +    +s+ ++k+++ k++   
  CCD22197.1 536 REKDEPKVVPL--SYAISVIEASTIPTRSNKDK---TGEEEEEEEEEEEAVMIIQPKEGAT---ESRGKGKGRRPKRVriR 608
                 55667777777..44455567665555333222...3333333333333344455544443...34444554455543322 PP

>> GOLD_2  Golgi-dynamics membrane-trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   3.6    0.0012       4.2      45      99 ..      61     114 ..      48     125 .. 0.64
   2 ?    2.6   0.6     0.051   1.8e+02      54      74 ..     566     591 ..     546     618 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0012
      GOLD_2  45 kavsvkvsesddeedeeeeeeeekveeedvekgsvkaakprldeivpvyrrdshe 99 
                 k+v    se +d+ d+e+e+e++k ++++ +kg+ +++k + ++ ++v+ +d  +
  CCD22197.1  61 KKVKSLSSEDNDN-DNEKEKEKKKKKKKKKKKGKETRQKHKDTKTIDVSIKDFSK 114
                 3333333333333.33333344677788889999999999999999999888655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.051
      GOLD_2  54 sddeedeeeeeeee.....kveeedv 74 
                  + ee+eeeeeeee     + +e+ +
  CCD22197.1 566 KTGEEEEEEEEEEEavmiiQPKEGAT 591
                 22222222222222122222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3087  (0.172179); expected 358.6 (0.02)
Passed bias filter:                      829  (0.0462379); expected 358.6 (0.02)
Passed Vit filter:                       187  (0.01043); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.33s 00:00:01.23 Elapsed: 00:00:00.45
# Mc/sec: 4264.98
//
Query:       CCD22198.1  [L=109]
Description: hypothetical protein NDAI_0A00380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-12   47.7   0.0      2e-12   47.1   0.0    1.3  1  Glutaredoxin   Glutaredoxin
     0.0011   18.9   0.0     0.0015   18.5   0.0    1.3  1  Thioredoxin_3  Thioredoxin domain
  ------ inclusion threshold ------
      0.016   15.4   0.4       0.03   14.5   0.4    1.5  1  Thioredoxin_4  Thioredoxin


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   3.3e-16     2e-12       1      60 []      19      85 ..      19      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 3.3e-16
                  EEEEESTSSHHHHHHHHHH.HHTTGG...EEEEEGCCSH...HHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlL.kelgvk...feeidvdkde...eireelkelsgvrtvPqvfidgkhv 60
                  +++ +k++CpyC  ++++L +el+v+     + ++++++   +i+e+l e++g++tvP+++i+gkh+
    CCD22198.1 19 IFIASKTYCPYCFSTIKTLfEELKVPkskALVLQLNEMDdgaDIQEALFEINGQKTVPNIYINGKHI 85
                  6899********999888888888776666777777766777************************8 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.6e-07    0.0015       2      59 ..      18      84 ..       6      96 .. 0.87

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.6e-07
                   EEEEESSS.STTCHHHHHHHHHHCHCCTCEC......EEECCTTHHHH..HHCT-SSSSEEECTTCE CS
  Thioredoxin_3  2 eikvlgpg.CakCpklekavkeaaaekgika......evekvtdfeei..ekygVmsvPalvidgkv 59
                   ei + +++ C++C  + k + e+++ ++ ka      e+++  d++e   e +g  +vP ++i+gk 
     CCD22198.1 18 EIFIASKTyCPYCFSTIKTLFEELKVPKSKAlvlqlnEMDDGADIQEAlfEINGQKTVPNIYINGKH 84
                   455644445*****999999999999998888999999*******99988899999*********95 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4     5e-06      0.03     104     162 ..      40      96 ..       3      97 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5e-06
                    .....HHHHHTS-------HHHHHHHHHHHHHHT--SS-EEEETTEEE-TT--HHHHHH CS
  Thioredoxin_4 104 aealdkdekfeacleeekldalveaeskeakkagiestPtfiingekveepqtyeelka 162
                    ++++ k +++  +l+e +  a+++++   ++ +g +++P ++ing+ + ++++ ++lk+
     CCD22198.1  40 ELKVPKSKALVLQLNEMDDGADIQEA--LFEINGQKTVPNIYINGKHIGGNSQLQDLKE 96 
                    44777888888888888888888554..45778999*****************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 808.47
//
Query:       CCD22199.1  [L=390]
Description: hypothetical protein NDAI_0A00410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0011   19.2   0.7     0.0039   17.5   0.1    2.2  2  GAT       GAT domain
     0.0078   16.1   0.2      0.017   15.0   0.2    1.6  1  VHS       VHS domain


Domain annotation for each model (and alignments):
>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.54   4.9e+03       7      24 ..      98     114 ..      94     136 .. 0.58
   2 !   17.5   0.1   4.3e-07    0.0039      33      73 ..     284     323 ..     257     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.54
         GAT   7 LsemLsstepdeellene 24 
                 L  +L+s  ++ +++++ 
  CCD22199.1  98 LLKLLESIAKS-DDSKMN 114
                 33344444322.333444 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 4.3e-07
         GAT  33 ckamqpriqklieetadeedllaelLqlNDeLnnvlerYer 73 
                  +a+++++ ++++ +++ e  l  lL +NDeL ++l+ Y++
  CCD22199.1 284 ARAIRRKVLRYLQLVTEGE-FLGSLLYANDELVKALTLYDE 323
                 589***********99999.*******************96 PP

>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2   1.9e-06     0.017      41     121 ..      53     134 ..      20     158 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTTTCHCS....HHHHHHHHHHHHHHHT CS
         VHS  41 pkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekknsklak...vkkkvlelleeWadaf 121
                   ea+r+i+k++++ n+  + ++L lld ++     k    + + ++l  l ++++ ++ sk++      k+ ++++++W+  +
  CCD22199.1  53 QEEAARAIRKRLKYGNSIQQNRSLDLLDLIITQN-IKYSTLFNDTKLLKLLESIAK-SDDSKMNLdtkFVKRTISYMKSWNSYL 134
                 579*************************998654.456666778888877777444.444443322346667788889998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1717  (0.0957666); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2722.38
//
Query:       CCD22200.1  [L=180]
Description: hypothetical protein NDAI_0A00420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-49  165.8   0.6    6.1e-49  165.1   0.6    1.3  1  SelR            SelR domain
  ------ inclusion threshold ------
      0.024   14.6   0.3        2.7    8.1   0.1    2.2  2  DZR             Double zinc ribbon
      0.056   13.2   0.7          2    8.2   0.0    2.3  2  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
      0.093   12.9   2.5       0.15   12.2   1.0    2.0  2  Yippee-Mis18    Yippee zinc-binding/DNA-binding /Mis18, centr
       0.36   11.0   5.9        1.3    9.1   0.4    3.3  4  zf-Mss51        Zinc-finger of mitochondrial splicing suppres
        0.7    9.6   4.2         18    5.1   0.2    3.1  3  DNA_RNApol_7kD  DNA directed RNA polymerase, 7 kDa subunit


Domain annotation for each model (and alignments):
>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1   0.6     2e-52   6.1e-49       2     120 ..      54     177 ..      53     178 .. 0.97

  Alignments for each domain:
  == domain 1  score: 165.1 bits;  conditional E-value: 2e-52
                 HHCTSHCCHHHHHHHTT-SSTTSSSTSS--SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTSEEEEEEETTCECEEEEEEC. CS
        SelR   2 lkkkLtpeqyevlrekgterpftgeyekekekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgmertevvcakcdahlGhvFe. 99 
                 ++++Lt+eq +vlr+kgterp+tg+y ++k++Gvy+ca c++pL++s+tkfdsgcGwpsF++++ +++++++ d+s+g+er+e++c+kc++hlGhvF+ 
  CCD22200.1  54 WNSNLTSEQLHVLRDKGTERPHTGKYLHNKDSGVYTCANCSNPLYTSNTKFDSGCGWPSFYKPYGNKSLNYHVDNSMGVERIEITCKKCGGHLGHVFKg 152
                 999***********************************************************************************************9 PP

                 TSSSS....S.SEEEEE-CCCEEEE CS
        SelR 100 dgpkp....ttgkrycinsvslkfk 120
                 +g ++    + ++r+c+ns+sl+f+
  CCD22200.1 153 EGWTKllnlPVDERHCVNSASLNFS 177
                 999888888789************7 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1    0.0009       2.7      27      49 .]      83     109 ..      56     109 .. 0.79
   2 ?    4.7   0.0      0.01        31      13      24 ..     137     148 ..     120     173 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0009
         DZR  27 a...edrCpsCgek.vdpearfCpeCG 49 
                 +    ++C +C+ +  +++++f   CG
  CCD22200.1  83 KdsgVYTCANCSNPlYTSNTKFDSGCG 109
                 0445799******99999999988887 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.01
         DZR  13 rfCseCgtklka 24 
                 ++C++Cg +l  
  CCD22200.1 137 ITCKKCGGHLGH 148
                 678888888764 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.025        76      33      51 ..      77      94 ..      73      96 .. 0.66
   2 ?    8.2   0.0   0.00068         2      19      35 ..     133     149 ..     126     157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.025
  zinc_ribbon_10 33 GlapkeeleevkyrCpkCg 51
                    G +   +++   y C++C 
      CCD22200.1 77 GKY-LHNKDSGVYTCANCS 94
                    555.33444458******6 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00068
  zinc_ribbon_10  19 nryalICskChshnGla 35 
                     +r  + C+kC  h G +
      CCD22200.1 133 ERIEITCKKCGGHLGHV 149
                     6899*********9987 PP

>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.2   6.5e+03      80     101 ..      30      51 ..      19      55 .. 0.64
   2 ?   12.2   1.0   5.2e-05      0.15       2      70 ..      87     151 ..      86     158 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.2
                   CTCEEEEGGGEEEEESSSSXXX CS
  Yippee-Mis18  80 rglfiletkaitsyslgekeee 101
                   +++f+ +  +it +s  +++++
    CCD22200.1  30 KNHFVRNFTRITAMSSSSSSSN 51 
                   4566666667777666666655 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.2e-05
                   EEEETTTS-EEEECCCEEEEECCCEEEES---CCCEEEECEEEETTSTTEEEEEEEETTT--EEEEEEE CS
  Yippee-Mis18   2 vfqCkkCktilgdslqlvsegralnivvlkkvtrnvvvgkelvtdeegkctystlsCkgCnsvlGwkYk 70 
                   v+ C++C+++l +s+  +++g  +  ++    ++++ ++   ++      +  +++Ck+C+ +lG ++k
    CCD22200.1  87 VYTCANCSNPLYTSNTKFDSGCGWPSFYKPYGNKSLNYHVDNSMG----VERIEITCKKCGGHLGHVFK 151
                   688****************99998888877788888776666666....66789***********9986 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.82   2.4e+03      28      38 ..      49      59 ..      45      69 .. 0.73
   2 ?    9.1   0.4   0.00045       1.3       3      34 ..      74     105 ..      72     108 .. 0.84
   3 ?   -1.7   0.0       1.1   3.3e+03      21      27 ..     107     113 ..     106     115 .. 0.78
   4 ?    2.8   0.1     0.044   1.3e+02      13      23 ..     133     143 ..     123     148 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.82
    zf-Mss51 28 cseehwedDye 38
                 s++hw+++ +
  CCD22200.1 49 SSNNHWNSNLT 59
                68999998765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00045
    zf-Mss51   3 PvpkhkqtapkhvdfeCpdCGiptycseehwe 34 
                 P++ +  +++ +  ++C +C  p y s+ ++ 
  CCD22200.1  74 PHTGKYLHNKDSGVYTCANCSNPLYTSNTKFD 105
                 67777777788889*************98875 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.1
    zf-Mss51  21 dCGipty 27 
                  CG+p +
  CCD22200.1 107 GCGWPSF 113
                 5****75 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.044
    zf-Mss51  13 khvdfeCpdCG 23 
                 ++++++C++CG
  CCD22200.1 133 ERIEITCKKCG 143
                 67899*****9 PP

>> DNA_RNApol_7kD  DNA directed RNA polymerase, 7 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2     0.006        18       1       9 [.      88      96 ..      88     103 .. 0.85
   2 ?   -0.4   0.0      0.33   9.8e+02      23      30 ..     108     115 ..     106     116 .. 0.88
   3 ?    3.8   0.6     0.015        45      18      24 ..     137     143 ..     133     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.006
                    -B-SSS--B CS
  DNA_RNApol_7kD  1 YiCgeCgae 9 
                    Y+C++C+++
      CCD22200.1 88 YTCANCSNP 96
                    9*****986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.33
                     S-----B- CS
  DNA_RNApol_7kD  23 CGhRilYK 30 
                     CG  ++YK
      CCD22200.1 108 CGWPSFYK 115
                     9*99***9 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.015
                     ---SSS- CS
  DNA_RNApol_7kD  18 iRCkeCG 24 
                     i Ck+CG
      CCD22200.1 137 ITCKKCG 143
                     88****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1251.25
//
Query:       CCD22201.1  [L=438]
Description: hypothetical protein NDAI_0A00430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-22   78.4   4.0    7.5e-22   77.4   4.0    1.5  1  SAM_Ste50p  Ste50p, sterile alpha motif
    3.7e-15   56.3   0.8    7.9e-15   55.3   0.8    1.6  1  RA          Ras association (RalGDS/AF-6) domain
  ------ inclusion threshold ------
        0.3    9.7   0.0       0.41    9.2   0.0    1.1  1  CitMHS_2    Putative citrate transport


Domain annotation for each model (and alignments):
>> SAM_Ste50p  Ste50p, sterile alpha motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   4.0   1.3e-25   7.5e-22       2      74 ..      66     139 ..      65     140 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 1.3e-25
                 XTTT--HHHHHHHHHHHHSS-T.TSCHHHHHHHTT--CCCHHHHHHHHHHHCTTS-HHHHHHHHHHHHHHHH-X CS
  SAM_Ste50p   2 dfdkWstdevvkkvkaeLglee.tdplilriRenditGsvLseltLqDCkeLcdddlkkaiklkllinklvDsk 74 
                  f +Ws+++vvk++   L l++ +dpli+++ + di G+vL+el ++DCk+Lcd d kkaikl+l  nkl D++
  CCD22201.1  66 SFMEWSVNDVVKWCFKSLSLNDiNDPLIKNLVDHDISGDVLDELDINDCKDLCDHDNKKAIKLQLAFNKLTDTH 139
                 588*****************99679***********************************************95 PP

>> RA  Ras association (RalGDS/AF-6) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.8   1.3e-18   7.9e-15      16      92 ..     306     387 ..     295     388 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 1.3e-18
                 ........EEEEEEETTSBHHHHHHHHHHHCT-.GGGGCCEEEECCCTTTTEEEEE-TTSBCHHHHCCC-TTTSTCEEEEEECT CS
          RA  16 t......tyksikvsststaqeViealLekfgl.edspedyvLveskerggeerkLdddecplqiqlqwkkreeslrFvLreke 92 
                 t      + k +++s+ +++++++++++++++l + ++++yvL  ++++g++er+L+ +e+p+ i++++k+++ + +++Lr++ 
  CCD22201.1 306 TstspvePLKQLRASKEDSCERILKNAMKRHNLnDKDWKQYVL--VICYGDQERILELNEKPVLIFKNLKQQGLHPAIMLRKRG 387
                 134455589**********************************..9************************************96 PP

>> CitMHS_2  Putative citrate transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   6.9e-05      0.41     346     381 ..     271     306 ..     252     319 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 6.9e-05
    CitMHS_2 346 ltGllssfLDnaPtylvFlnlaggdgadveaaalmt 381
                  tG+ ss  Dn+Pt l+  + a+ ++++++++++ t
  CCD22201.1 271 RTGSYSSSSDNTPTTLTHPSNAQQQQQQQQQQQQST 306
                 69********************98855544443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2008  (0.111997); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3200.20
//
Query:       CCD22202.1  [L=320]
Description: hypothetical protein NDAI_0A00440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-37  129.0   3.7    2.9e-37  128.0   3.7    1.5  1  RRM_Rrp7  Rrp7 RRM-like N-terminal domain
    5.5e-24   84.6   9.2    5.5e-24   84.6   9.2    1.8  2  RRP7      Ribosomal RNA-processing protein 7 (RRP7) C-termina
  ------ inclusion threshold ------
      0.027   14.5   0.4      0.068   13.2   0.1    1.8  2  DUF547    Protein of unknown function, DUF547
       0.48   10.4   5.6       0.45   10.5   4.1    1.7  2  DUF45     Protein of unknown function DUF45


Domain annotation for each model (and alignments):
>> RRM_Rrp7  Rrp7 RRM-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   3.7   6.4e-41   2.9e-37       1     162 []      28     191 ..      28     191 .. 0.91

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 6.4e-41
    RRM_Rrp7   1 eik.GFlvlPlkLpkskklknkatHYlylkkHqtknndeessrslFlvNlPiettletlkkffqkv....algatiesvvsslltdeqedvsidltklt 94 
                 ++k GFlv+P+kL ++      + HY ++kkHqtk + e+  + lF+vNlP+ t+++ lkk + ++    ++ a++e++   l +de+   +idl++lt
  CCD22202.1  28 CMKnGFLVIPFKLSPN------VYHYTFVKKHQTKLDSES--NGLFVVNLPLLTNVDILKKVLSQIcskfDTIAHVEKL---LYNDEFGLDEIDLSSLT 115
                 5899**********99......9************99966..***********************99877888888888...***************** PP

    RRM_Rrp7  95 sdlelkdeekdeeeaklPkntglvkfvDkssvelafnalkKlsksstkke............Weldkkeplgsqrflnky 162
                 sdl + d+++++e++ +P+nt+++kfvD+ss++++fnal+K+s+ +++++            We+  ++p + ++f+n+y
  CCD22202.1 116 SDLLK-DTNNTNESRFTPRNTSVLKFVDESSLNNCFNALRKYSQLTSSSSkknknvddeliqWEF--ENP-SIATFINFY 191
                 ***99.99999999****************************975444444457999********..888.899999998 PP

>> RRP7  Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.5   6.9e+03      17      35 ..     152     170 ..     142     174 .. 0.52
   2 !   84.6   9.2   1.2e-27   5.5e-24       7     119 .]     196     319 ..     191     319 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.5
        RRP7  17 ymeefdkeeeeekkeekkk 35 
                 +++++ +  + + k++k+ 
  CCD22202.1 152 ALRKYSQLTSSSSKKNKNV 170
                 4555555544444444333 PP

  == domain 2  score: 84.6 bits;  conditional E-value: 1.2e-27
        RRP7   7 eeelqeevdeymeefdkeeeeekkeekkkeeevDeDGfvtVtr.........gkkaaakeea..............aeekakkkekkkkkkkelldFYr 82 
                  e l++ v e ++ f+++e ee+++ +   + vDeDGf++V++                  +              +    +k+  +  +kk+++dFYr
  CCD22202.1 196 IEYLKNDVYEHLKIFEQRELEEESNVQS--SIVDEDGFTLVVGkntkslnsiR--------KkilnrnplskyeskV--GGDKRTPNAIDKKAKQDFYR 282
                 67789999999*******9886655555..59***********4433332220........1346666676654331..2233333333334445**** PP

        RRP7  83 FQirekkkeelaeLrkkFeeDkekieelkekrkfkpy 119
                 FQ+re+kk+e+++L++kF+eD+eki+ +k+krkf+py
  CCD22202.1 283 FQVRERKKQEINQLLNKFKEDQEKIKVMKAKRKFNPY 319
                 ************************************8 PP

>> DUF547  Protein of unknown function, DUF547
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.83   3.7e+03      39      39 ..      77      77 ..      43     145 .. 0.50
   2 ?   13.2   0.1   1.5e-05     0.068       9     109 ..     183     313 ..     174     317 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.83
      DUF547 39 l 39
                +
  CCD22202.1 77 I 77
                1 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.5e-05
      DUF547   9 klAfwiNlYNalvlhail...........eyg...pesnvkrlslf.kkaayniggqslslddIehgiLrkn...............lsrlkkka.rde 76 
                  +A +iN Y  + ++ +            +      esnv++  +  + +++ +g+++ sl+ I+++iL +n               ++ ++kka +d 
  CCD22202.1 183 SIATFINFYKPIDIEYLKndvyehlkifeQ-ReleEESNVQSSIVDeDGFTLVVGKNTKSLNSIRKKILNRNplskyeskvggdkrtPNAIDKKAkQDF 280
                 667777777777666555443433333321.13334444544444457789999999************999766666655555554223333335666 PP

      DUF547  77 rrkyaleqpdprihfaLvcgsascpplriytae 109
                  r ++ e +   i+ +L+     ++++++++a+
  CCD22202.1 281 YRFQVRERKKQEINQLLNKFKEDQEKIKVMKAK 313
                 666666666666777777777777777666665 PP

>> DUF45  Protein of unknown function DUF45
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.73   3.3e+03      74     108 ..     143     178 ..     120     183 .. 0.73
   2 ?   10.5   4.1    0.0001      0.45      26     142 ..     199     315 ..     185     317 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.73
       DUF45  74 kgk.easvklkreelelavkkeeeeeklrkaleewl 108
                 +++ ++ +++ r++ +l ++ +++++++ ++l +w 
  CCD22202.1 143 ESSlNNCFNALRKYSQLTSSSSKKNKNVDDELIQWE 178
                 333577888888888999999999999988888885 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0001
       DUF45  26 iedfvkkkakwiekklakleerakeaekelesgesfpl.lGkkyr.lkvekgk.easvklkreelelavkkeeeeeklrkaleewlrkeakeeleerla 121
                 +++ v+++ k  e++  +lee +++ ++++++++ f l  Gk+++ l+ +++k  ++ +l++ e ++   k++ ++  +ka ++++r +++e  ++ ++
  CCD22202.1 199 LKNDVYEHLKIFEQR--ELEE-ESNVQSSIVDEDGFTLvVGKNTKsLNSIRKKiLNRNPLSKYESKVGGDKRTPNAIDKKAKQDFYRFQVRERKKQEIN 294
                 555555555554433..3444.679999********99988776536666666577778888888888888888999999999**************** PP

       DUF45 122 klaaklgvkprsvsikdmktr 142
                 +l +k++ + +++++ ++k++
  CCD22202.1 295 QLLNKFKEDQEKIKVMKAKRK 315
                 *****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1753  (0.0977746); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2348.67
//
Query:       CCD22203.1  [L=802]
Description: hypothetical protein NDAI_0A00450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.8e-160  534.4   0.5   2.6e-160  533.9   0.5    1.2  1  Histidinol_dh  Histidinol dehydrogenase
    4.8e-27   93.6   0.1      1e-26   92.5   0.1    1.6  1  PRA-CH         Phosphoribosyl-AMP cyclohydrolase
    3.2e-14   53.1   0.2    3.2e-14   53.1   0.2    2.1  2  PRA-PH         Phosphoribosyl-ATP pyrophosphohydrolase


Domain annotation for each model (and alignments):
>> Histidinol_dh  Histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  533.9   0.5  4.4e-164  2.6e-160       2     409 .]     378     791 ..     377     791 .. 0.96

  Alignments for each domain:
  == domain 1  score: 533.9 bits;  conditional E-value: 4.4e-164
                    -------HHHHHHHHHHHHHHHHHCHHHHHHHHHHCCSSSSGGCCEE-HHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHCC----EEEEEECTTEE CS
  Histidinol_dh   2 krseedseeveetvkeiledvreeGdealleytekFDkvkkleslrvseeeieealekldeelkealeeaaenirkfheaqkeseeevketepgvv 97 
                    +r+ ++++++++ v++i+e+v+++Gd+al+eyt+kFD+v+ l++  +++   +e le l+ee+keal+ ++en+rkfh+aq+++e  v+et+pgv+
     CCD22203.1 378 TRPIQKTSQIMHLVNPIIENVKSKGDAALIEYTAKFDGVQ-LTTPVLEAPFPDEYLEGLTEEMKEALDLSIENVRKFHAAQLQKEPLVVETQPGVI 472
                    5788999******************************885.34445555557889999*************************889999******* PP

                    EEEEEEE-SEEEEE---STT--CHHHHHHHHHHHHHT-SEEEEEE-SS..GG.--HHHHHHHHHCT-SEEEE--HHHHHHHHHH--SSS---SEEE CS
  Histidinol_dh  98 lgqkvrpiervGlYvPgGkaaypStvlmnavpAkvAgvkeivvvtPpq..dgkvnpavlaaaklagvdeiykvGGaqAiaalAyGtesipkvdkiv 191
                    +++  rpiervGlY+PgG+a++pSt+lm+++pA+vA++keiv+++Pp+  dg+v+p+v+++a+ +g+++i+ +GGaqA+aa+AyGtes+pkvdki+
     CCD22203.1 473 CSRFPRPIERVGLYIPGGTAVLPSTALMLGIPAQVAQCKEIVFASPPRksDGRVSPEVVYVASQCGASKIVLAGGAQAVAAMAYGTESVPKVDKIL 568
                    ************************************************999********************************************* PP

                    ---SHHHHHHHHHHCTT....BEES----S-EEEEEE-TTS-HHHHHHHHHHHHTT-TT-EEEEE..ES-HHHHHHHHHHHHHHHCC-TTHHHHHH CS
  Histidinol_dh 192 GPGniyVaaAKrlvsge....vgiDmiaGPsEvlviaDetadpefvAaDLlsqaEHdedaqavlv..ttseelaeaveeevekqleelprkeiaek 281
                    GPGn++V+aAK++v+++    ++iDm+aGPsEvlvi+De+ad ++vA+DLlsqaEH+ d+q++l     see + +++e+v+kq+ +lpr +i+++
     CCD22203.1 569 GPGNQFVTAAKMYVQNDtqalCSIDMPAGPSEVLVICDEDADEDYVASDLLSQAEHGIDSQVILCaiNLSEEKIIRIQEAVNKQALALPRVDIIRQ 664
                    **************55545789*****************************************976689*************************** PP

                    HHCCH-EEEE-SSHHHHHHHHHHH--SEEEEESTTHHHHGGG--S-SEEEESTT--HHHHHHTSSS------TTGGGT---S-GGGGEEEEEEEEE CS
  Histidinol_dh 282 slekqsaiilvedleeaielaneyApEHlelqvedpeellekiknaGaiflGeyspeslgDYaaGtnhvLPTsgtArfssglsvedFlkkisvqel 377
                     +++ s+iil+++ eea+e++n+yApEHl+lq++++++++e ++naG+if+G+y+pes+gDY +Gtnh+LPT+g+Ar++sg ++++F+k i+ q++
     CCD22203.1 665 CISH-STIILCDSYEEAFEMSNRYAPEHLILQINNANDYVELVDNAGSIFVGAYTPESCGDYSSGTNHTLPTYGYARQYSGANTSTFQKFITAQNV 759
                    ****.******************************************************************************************* PP

                    -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Histidinol_dh 378 skealkelaeavetlAeaEgLeaHaeavkvRl 409
                    ++e+lk++++av+ +A++EgL+ H++avkvR+
     CCD22203.1 760 TPEGLKNIGKAVMCVAKVEGLDGHRNAVKVRM 791
                    ******************************96 PP

>> PRA-CH  Phosphoribosyl-AMP cyclohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.1   1.7e-30     1e-26       2      73 ..     159     231 ..     158     232 .. 0.96

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 1.7e-30
                 EEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS.-SSTTSBSSS- CS
      PRA-CH   2 laymnkealektletgkavyySrsrkklWkKGetSgnvqkvkeirlDcDqDalllkveqkg.aaCHtgkesCF 73 
                 l+y++ e+++k++e +k vy+Srsr+++W KGe+Sgn+q +k+i++DcD+Dal + veqk+ ++CH++++sCF
  CCD22203.1 159 LVYSSIESIQKAIELQKGVYFSRSRNNIWIKGESSGNTQLLKQIDIDCDGDALKFVVEQKNnTFCHLNTNSCF 231
                 68**********************************************************737********** PP

>> PRA-PH  Phosphoribosyl-ATP pyrophosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.2   5.4e-18   3.2e-14       3      80 ..     240     318 ..     238     321 .. 0.95
   2 ?   -4.0   0.2         3   1.8e+04      29      41 ..     339     351 ..     330     362 .. 0.55

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 5.4e-18
                 HHHHHCT----SS----.-HHHHHH...HHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHCT--CHHHHHHHH CS
      PRA-PH   3 efhrligerkpetPeas.taelasl...raaligEEavElleaasegdlaeladelaDllYvtygllvllGidldavfeevh 80 
                 e++ l+++r ++ Pe+s t++l+++   + a+i+EEa+El +a    +  e+a+e+aDl+Y+++  lv++G++l +v ++++
  CCD22203.1 240 ELQSLLQDRLQNSPEGSyTKRLFNDetlLNAKIKEEAEELTDAQ---TAGEIAWEAADLFYFAMTKLVAKGVSLSDVENNLK 318
                 7899****************************************...789***************************99886 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 3
                 HHHHHHHHHHHHH CS
      PRA-PH  29 aligEEavEllea 41 
                 ++ +EE +E  +a
  CCD22203.1 339 KKEEEEEEEPKQA 351
                 3333444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.41
# Mc/sec: 5827.66
//
Query:       CCD22204.1  [L=576]
Description: hypothetical protein NDAI_0A00460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-15   54.4   0.1      2e-14   53.4   0.1    1.5  1  CAP_GLY         CAP-Gly domain
     0.0026   17.6   0.9     0.0046   16.8   0.9    1.4  1  CLIP1_ZNF       CLIP1 zinc knuckle
  ------ inclusion threshold ------
       0.13   13.2   0.2       0.13   13.2   0.2    3.7  2  DUF1764         Eukaryotic protein of unknown function (DUF17
       0.23   10.3  36.2    3.9e+02   -0.4  35.7    2.1  1  DUF812          Protein of unknown function (DUF812)
       0.42   10.3  38.2       0.34   10.6  20.2    2.3  2  Lebercilin      Ciliary protein causing Leber congenital amau
        0.7   10.3  35.6       0.95    9.9  16.3    2.3  2  Fez1            Fez1
       0.72    9.4  33.9      0.032   13.8   3.8    2.8  3  MscS_porin      Mechanosensitive ion channel porin domain
       0.87    9.1  25.9       0.91    9.1  15.3    2.7  2  PspA_IM30       PspA/IM30 family
        3.3    8.7   8.5        2.8    8.9   0.5    3.0  3  Rotamase        PPIC-type PPIASE domain
        3.7    8.5  39.7       0.22   12.4   1.5    4.3  4  PRKG1_interact  cGMP-dependent protein kinase interacting dom
        4.6    7.5   9.2        9.2    6.6   1.0    3.1  3  WXG100          Proteins of 100 residues with WXG
        7.3    7.1  41.4         18    5.8  18.8    2.9  2  APG6_N          Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> CAP_GLY  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.1   1.3e-17     2e-14       1      65 []      21      86 ..      21      86 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 1.3e-17
     CAP_GLY  1 vgdrvklkegrrGvvryvGpvpfakgewvGveldepnGkndGsvkgkrYFeck.pnrGvFvrpekv 65
                +g+ ++ ++  rG  +yvGpv++++g++vGv l  + Gkn+Gs++g+ YF+++ p++G+F++ +kv
  CCD22204.1 21 IGCSIQIPKIGRGELKYVGPVSNKQGIFVGVDLLANIGKNNGSFEGRVYFKTEyPSSGLFIQLSKV 86
                5788888899************************99***************87699*****99987 PP

>> CLIP1_ZNF  CLIP1 zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.9     3e-06    0.0046       2      17 .]     505     520 ..     505     520 .. 0.98

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3e-06
   CLIP1_ZNF   2 pYCdnCEvFGHdTedC 17 
                 ++C++CE+ GH+ +dC
  CCD22204.1 505 LWCALCEREGHESIDC 520
                 7*************** PP

>> DUF1764  Eukaryotic protein of unknown function (DUF1764)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2       5.8   8.7e+03      23      53 ..     103     117 ..      84     143 .. 0.43
   2 ?   13.2   0.2   8.7e-05      0.13       8      95 ..     426     523 ..     419     524 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.8
     DUF1764  23 kekekeeeeeekekkkkskkkkkkkkkkeee 53 
                 + ++++ ++++++                + 
  CCD22204.1 103 NATSSVGRNSSRR----------------NT 117
                 2222222211111................11 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 8.7e-05
     DUF1764   8 keeideifseskkkkkekekeeeee.ekekkkkskkkkkkkkkkeeekkfedseskkrrktedGlpvYteeeLgigkadgG.............gtplC 92 
                 k+e  ei + +k+ +k +++ +e++ +  k  +s+++++  +++e+++++++s+  k++ t + lp+Y+ +   i+  ++G             ++ +C
  CCD22204.1 426 KKEHGEIEELKKEMQKLQSELKEANmQLAKLPSSTSSSRMPNNNETKSAVVHSP--KNNITIESLPIYKPDH-PIDA-SAGrelwcalcereghESIDC 520
                 444455555555555555544443324444445555555555666666666666..8999*********964.3444.344456666666666688888 PP

     DUF1764  93 PFd 95 
                 PF+
  CCD22204.1 521 PFE 523
                 886 PP

>> DUF812  Protein of unknown function (DUF812)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4  35.7      0.26   3.9e+02     180     477 ..     121     458 ..      81     469 .. 0.53

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.26
      DUF812 180 nskelkefykellplvtaqlssraslvpslleenaaelaaeqeweeeaneqgl..asr.lteeeykkrkkeklqkrlaeqlrkaalkseeaessasksk 275
                 +s++ +++ ++ lp  t+++ss+ s+ + ++ ++  +l+a+++  ++ n  g   a+  +++++    + + +++    +++++ +++++a+       
  CCD22204.1 121 KSSNERKLITNSLPRSTSRISSHGSTGSTIIRRQGPILSANSNNHQYINGTGTanANGgVNAHDNIGMDLTMMKSPTPMRFESQQQSRDNAN------D 213
                 34444556666677777777777777777777888888888887777777777542223444444444444444444444444444333333......3 PP

      DUF812 276 sdlaellsef.............seksetdslktkgsrfthaeklqftke....................................ela...kkaetee 322
                 +dl++ ++                           + r+++  ++++ +e                                    + +   + +++  
  CCD22204.1 214 DDLDTDMDMDidppssavrrslgL-----------NIRTEDHTQISMSNEqqqlirdyeikidkqrneisqykkllddqrmvleeiQ-PtidQYEKNLH 300
                 333322221123222222333320...........2222222223333333334444444444334444444444444444333321.02223344444 PP

      DUF812 323 elkkkreeeleelqeqieeleskieeleeeikklessikqveeeleeekee..neelekevklkkktlellpdae.eniekLqalveasaqrlvelakq 418
                 +++ + ++  ++l+++ e+  ++ +  e e ++l + i q+ ee++e++++  n +++k++++++   +   d e ++i++  +l++ s+++  +  +q
  CCD22204.1 301 DMELQLQNVNNQLNQEREQQLKQKQFFETEHEQLLAVIDQLHEEIKENEKQfiNINNNKSIDTHNNNNNVFSDEEfKSIKNELELLKISRSKWDKEREQ 399
                 444444444445555555555555555555555555555555555555554333444444444555555553322133443334555666666666666 PP

      DUF812 419 WekhRvplieeyrelkesksekekeaerkleeikklrekmkevaeelrqkeellkqLva 477
                  + h + l +e+ +l ++  + ++++++   ei++l+++m+++++el++ + +l +L +
  CCD22204.1 400 LKMHNTSLSKELMALMNADINNDDDIKKEHGEIEELKKEMQKLQSELKEANMQLAKLPS 458
                 66667778899999999999999999999999999999999999999999998888854 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  20.2   0.00022      0.34      85     192 ..     252     351 ..     240     352 .. 0.89
   2 ?    5.4  10.0    0.0085        13      11      92 ..     374     455 ..     366     475 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
  Lebercilin  85 elekklkekeaellrlkdklkklkkLsedknLaereeLqkkLeeleakleekeekikeLerkleleeksfrrqlaaekkktkeaqeevkalqeeierlk 183
                 e+++ +++ e ++ + +++++++kkL +d+ +         Lee++ ++++ e+++ ++e +l++ +++ +++ +++ k+++  ++e ++l + i++l+
  CCD22204.1 252 EQQQLIRDYEIKIDKQRNEISQYKKLLDDQRM--------VLEEIQPTIDQYEKNLHDMELQLQNVNNQLNQEREQQLKQKQFFETEHEQLLAVIDQLH 342
                 4566679999999999*********9999999........7899999999999999999999999999999999999999999999************* PP

  Lebercilin 184 qklkeKere 192
                 +++ke e++
  CCD22204.1 343 EEIKENEKQ 351
                 *****9998 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0085
  Lebercilin  11 lkikeLqnelaelqskleelrkEnklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqekerelekklke 92 
                 +++k+ +nel+ l+   ++ +kE + Lk  +   +k+L  + +++ +  + +++ + E++ l++++ k+q + +e++ +l +
  CCD22204.1 374 EEFKSIKNELELLKISRSKWDKEREQLKMHNTSLSKELMALMNADINNDDDIKKEHGEIEELKKEMQKLQSELKEANMQLAK 455
                 5678889999999999999999999999999999999999999999999999999999999999999999999888888765 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  12.9     0.022        33      17     162 ..     254     331 ..     200     336 .. 0.59
   2 ?    9.9  16.3   0.00064      0.95      38     156 ..     336     458 ..     330     478 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.022
        Fez1  17 qQL.kdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaa 114
                 qQL +d+   + ++ +ei + k  l + r  lee + +i+++                                                         
  CCD22204.1 254 QQLiRDYEIKIDKQRNEISQYKKLLDDQRMVLEEIQPTIDQY--------------------------------------------------------- 295
                 222233333333333333333333333333333333333333......................................................... PP

        Fez1 115 lesdeakaqrqeaeeleelkreverlraeLkeerqkkeeqassFeqER 162
                             +++l++++ ++++++++L++er+++ +q++ Fe+E 
  CCD22204.1 296 ------------EKNLHDMELQLQNVNNQLNQEREQQLKQKQFFETEH 331
                 ............566777777777777777777777777777777765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00064
        Fez1  38 aqlrelrakleekeeeikelee..sleektlelevc.enelqrkkseaellrekvekleeelkelreelselsleeeeaa.lesdeakaqrqeaeelee 132
                 a + +l+++++e+e++  ++++  s+++++++++v  ++e++  k+e ell+   +k ++e ++l+ + ++ls+e    + ++ ++    ++e+ e+ee
  CCD22204.1 336 AVIDQLHEEIKENEKQFININNnkSIDTHNNNNNVFsDEEFKSIKNELELLKISRSKWDKEREQLKMHNTSLSKELMALMnADINNDDDIKKEHGEIEE 434
                 5667889999*****99988751156677777777615567777*********************9977776655444433444444556778999*** PP

        Fez1 133 lkreverlraeLkeerqkkeeqas 156
                 lk+e+++l++eLke + +  +  s
  CCD22204.1 435 LKKEMQKLQSELKEANMQLAKLPS 458
                 *************99888766655 PP

>> MscS_porin  Mechanosensitive ion channel porin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0  22.2      0.34     5e+02      43     162 ..     254     335 ..     236     387 .. 0.49
   2 ?   -1.8   6.5       1.2   1.9e+03      27      77 ..     319     369 ..     315     408 .. 0.62
   3 ?   13.8   3.8   2.2e-05     0.032      10      69 ..     403     461 ..     395     475 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.34
  MscS_porin  43 qkaiddaPkelrelqqelealqkkkeeaskeilaklsleeLeqrllqtssqlqelqeqlaqlnsqlvelqtrperaqqqltearqrlqeirnrLnstaa 141
                 q+ i+d+  ++++ ++e++++                                  ++ l +    l e+q  +++  + l ++  +lq ++n+Ln+   
  CCD22204.1 254 QQLIRDYEIKIDKQRNEISQY----------------------------------KKLLDDQRMVLEEIQPTIDQYEKNLHDMELQLQNVNNQLNQE-- 316
                 333333333333333333333..................................333333333333333333333333333333333333333333.. PP

  MscS_porin 142 agealsqaqrtalqaelaale 162
                 ++++l q q    ++e + l 
  CCD22204.1 317 REQQLKQKQFF--ETEHEQLL 335
                 22222222222..22222222 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
  MscS_porin  27 nlLdkidkskkkaeelqkaiddaPkelrelqqelealqkkkeeaskeilak 77 
                 ++L++++ ++ + e+l  +id+  +e++e +++  + +++k+ ++ ++ ++
  CCD22204.1 319 QQLKQKQFFETEHEQLLAVIDQLHEEIKENEKQFININNNKSIDTHNNNNN 369
                 578888888888888888888888888888888888844444444333333 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 2.2e-05
  MscS_porin  10 ldeaeqkallqdLeqalnlLdkidkskkkaeelqkaiddaPkelrelqqeleal.qkkkee 69 
                  ++   k+l + +++ +n+ d+i+k   ++eel+k +++ + el+e++ +l++l +  +++
  CCD22204.1 403 HNTSLSKELMALMNADINNDDDIKKEHGEIEELKKEMQKLQSELKEANMQLAKLpS--STS 461
                 46888999999*******************************************31..222 PP

>> PspA_IM30  PspA/IM30 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  15.3   0.00061      0.91      75     189 ..     246     360 ..     239     402 .. 0.83
   2 ?    3.2   4.4     0.037        55      99     149 ..     403     453 ..     392     474 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00061
   PspA_IM30  75 kaALtkgeeeLArealaeikslekqaealetqlaqqrsaveqlrkqlealetkieelkakkellkarekaakaqeavqkslgklstesatdslerieeK 173
                 +  +++ +++L+r    +i +  +++ +++++l+ qr   e+++  +++ e+++ +++ + + +  ++++ + q+  qk++ + + e+  +  +++ e 
  CCD22204.1 246 QISMSNEQQQLIRDYEIKIDKQRNEISQYKKLLDDQRMVLEEIQPTIDQYEKNLHDMELQLQNVNNQLNQEREQQLKQKQFFETEHEQLLAVIDQLHEE 344
                 66789999******************************************************************************************* PP

   PspA_IM30 174 ieerearadaaaelae 189
                 i e e +++  +  + 
  CCD22204.1 345 IKENEKQFININNNKS 360
                 ****999988887774 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.037
   PspA_IM30  99 qaealetqlaqqrsaveqlrkqlealetkieelkakkellkarekaakaqe 149
                 + + l+++l+ +  a  +    +++    ieelk+++++l++ +k a +q 
  CCD22204.1 403 HNTSLSKELMALMNADINNDDDIKKEHGEIEELKKEMQKLQSELKEANMQL 453
                 555555555555555566667788888999999999999999999999883 PP

>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       3.5   5.2e+03      13      32 ..     304     323 ..     288     329 .. 0.54
   2 ?    8.9   0.5    0.0019       2.8      10      52 ..     326     368 ..     319     384 .. 0.87
   3 ?    3.4   0.8       0.1   1.6e+02      11      45 ..     428     462 ..     411     483 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.5
                 --HHHHHHHHHHHHCCTCCC CS
    Rotamase  13 keraeakakaeeileqlksg 32 
                  + +++++++++ +eq  ++
  CCD22204.1 304 LQLQNVNNQLNQEREQQLKQ 323
                 34445555555555554444 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0019
                 E----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCC CS
    Rotamase  10 asekeraeakakaeeileqlksgedtFeelArkySddknsakn 52 
                   e+e ++  a +++++e++k++e++F ++ +++S d+ + +n
  CCD22204.1 326 FFETEHEQLLAVIDQLHEEIKENEKQFININNNKSIDTHNNNN 368
                 5678899999*************************99987666 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.1
                 ----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-. CS
    Rotamase  11 sekeraeakakaeeileqlksgedtFeelArkySd 45 
                 +  e +e k+++++++++lk+ + ++++l    S 
  CCD22204.1 428 EHGEIEELKKEMQKLQSELKEANMQLAKLPSSTSS 462
                 566788999999*******9999988888777773 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.9   2.9e+03      19      65 ..      82     127 ..      67     139 .. 0.53
   2 ?    7.4   6.9    0.0053       7.9       2      54 ..     274     329 ..     273     334 .. 0.74
   3 ?    5.6  10.1     0.019        29      11      93 ..     329     414 ..     324     416 .. 0.80
   4 ?   12.4   1.5   0.00015      0.22       8      44 ..     427     464 ..     425     485 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
  PRKG1_interact  19 eLeelekelselkseleklkqqrqesvskrssllelekrerrslerk 65 
                     +L+++ k ++++  + ++++++ ++ +  r+s+     + ++s+erk
      CCD22204.1  82 QLSKVAKLIDNASFTNSNTHNNATS-SVGRNSSRRNTLNFKSSNERK 127
                     5556666665555555555544333.333333333333334444444 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0053
  PRKG1_interact   2 YkkLYeeekeenerLkreLeelekelselkseleklkqq.rqe..svskrssllel 54 
                     YkkL  +++   e+++ ++++ ek+l++++ +l+++++q +qe  +  k+++  e+
      CCD22204.1 274 YKKLLDDQRMVLEEIQPTIDQYEKNLHDMELQLQNVNNQlNQEreQQLKQKQFFET 329
                     ************************************98853331123333333333 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.019
  PRKG1_interact  11 eenerLkreLeelekelselkseleklkqqrq.esvskrssllelekrerrslerkisel..eeelkeleeLraenqrLkdEngAL 93 
                     +e+e+L + +++l++e++e ++++ +++++++ +  ++++++ + e+ ++ ++e ++ ++  ++  ke e+L+++n  L +E  AL
      CCD22204.1 329 TEHEQLLAVIDQLHEEIKENEKQFININNNKSiDTHNNNNNVFSDEEFKSIKNELELLKIsrSKWDKEREQLKMHNTSLSKELMAL 414
                     78999******************9999977441456666777777888877888877766225555****************9998 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00015
  PRKG1_interact   8 eekeenerLkreLeelekelselkseleklkqqrqe.s 44 
                     +e+ e e+Lk+e+++l+ el+e++ +l+kl ++ ++ +
      CCD22204.1 427 KEHGEIEELKKEMQKLQSELKEANMQLAKLPSSTSSsR 464
                     67778899999999999999999999999875522211 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.0    0.0062       9.2      51      83 ..     283     315 ..     279     319 .. 0.88
   2 ?   -2.1   0.1       3.1   4.6e+03      17      32 ..     328     343 ..     320     352 .. 0.49
   3 ?    5.2   0.1     0.017        25      51      75 ..     430     454 ..     422     459 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0062
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  51 aefeewkqaaqklvdaLeeisealkqaanafed 83 
                 +++ee++++++++ ++L++++ +l++++n++ +
  CCD22204.1 283 MVLEEIQPTIDQYEKNLHDMELQLQNVNNQLNQ 315
                 678999999999999999999999999999876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.1
                 HHHHHHHHHHHHHHHH CS
      WXG100  17 qkqaeeledelqrlka 32 
                  +++e+l +++++l+ 
  CCD22204.1 328 ETEHEQLLAVIDQLHE 343
                 3333333333333333 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  51 aefeewkqaaqklvdaLeeisealk 75 
                 +e+ee+k+++qkl+ +L+e + +l 
  CCD22204.1 430 GEIEELKKEMQKLQSELKEANMQLA 454
                 4566777777777777777766665 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  18.8     0.012        18       9     113 ..     255     364 ..     253     372 .. 0.78
   2 ?    5.6  15.1     0.015        22      45     114 ..     386     455 ..     356     465 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.012
      APG6_N   9 lLleeldkqleqaekerdaYeeflkklkkekkeeek.........qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeee 98 
                  L+  ++ +++++++e+ +Y++ l+  +   +e +          +d e  +l++   +l++e+e+ l++ +  e+e+e+l a + +l+ee +   e+e
  CCD22204.1 255 QLIRDYEIKIDKQRNEISQYKKLLDDQRMVLEEIQPtidqyeknlHDME-LQLQNVNNQLNQEREQQLKQKQFFETEHEQLLAVIDQLHEEIK---ENE 349
                 5888899999999999999999999888775554447777777644444.567777889************************9999998865...677 PP

      APG6_N  99 erfwreynelqlell 113
                 ++f++  n+++++  
  CCD22204.1 350 KQFININNNKSIDTH 364
                 778888777776655 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.015
      APG6_N  45 qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelle 114
                  + ++ + ++e e+l+    +l +eL +l +++ + ++++++ + e e+l++e ++  +e +e +++l++
  CCD22204.1 386 LKISRSKWDKEREQLKMHNTSLSKELMALMNADINNDDDIKKEHGEIEELKKEMQKLQSELKEANMQLAK 455
                 2233344445555555555555555555555555555555555555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2871  (0.160132); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                       123  (0.00686039); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.08u 0.36s 00:00:01.44 Elapsed: 00:00:00.57
# Mc/sec: 3069.91
//
Query:       CCD22205.1  [L=380]
Description: hypothetical protein NDAI_0A00470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2779  (0.155); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.08u 0.33s 00:00:01.41 Elapsed: 00:00:00.52
# Mc/sec: 2215.95
//
Query:       CCD22206.1  [L=608]
Description: hypothetical protein NDAI_0A00480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-06   26.5   0.0    9.1e-06   25.4   0.0    1.6  1  SH3_9     Variant SH3 domain
     0.0034   17.0   0.0      0.015   14.9   0.0    2.1  1  SH3_1     SH3 domain
  ------ inclusion threshold ------
       0.02   14.6   0.1      0.045   13.4   0.1    1.6  1  SH3_2     Variant SH3 domain
       0.15   11.9   0.1       0.44   10.5   0.1    1.8  1  MtrG      Tetrahydromethanopterin S-methyltransferase, subuni
       0.67    9.4   2.0       0.74    9.3   0.0    2.1  2  SKG6      Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.5e-09   9.1e-06       1      36 [.     525     560 ..     525     569 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.5e-09
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsl 36 
                 ++ +y+++ +de+ +  G+++ v+  ++dgW+++++
  CCD22206.1 525 VIQRYDAKLADEINITIGEYVKVLASHSDGWCLVEK 560
                 789*********************999*******95 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.2e-06     0.015       6      36 ..     529     559 ..     524     567 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.2e-06
                 BEXSSTTBXEBSTTEEEEEEEECSSSEEEEE CS
       SH3_1   6 YeaeesdELsfkkGDviivleksedgWwkgr 36 
                 Y+a+ +dE++++ G+ ++vl+ + dgW+ ++
  CCD22206.1 529 YDAKLADEINITIGEYVKVLASHSDGWCLVE 559
                 99999***********************997 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.3e-05     0.045       2      42 ..     523     560 ..     522     567 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev 42 
                 +++i+ y++   +e++++ G+ +kvl    + sdgw+++e+
  CCD22206.1 523 YKVIQRYDAKLADEINITIGEYVKVL---ASHSDGWCLVEK 560
                 89************************...99999***9986 PP

>> MtrG  Tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00012      0.44      32      63 ..      54      86 ..      50      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
        MtrG 32 EiaqriGkkvGRdiGilYGl.viGliillvyil 63
                E  q  G+++G  iG+  G+ ++Gl+++l y+ 
  CCD22206.1 54 EGKQTSGRTIGLSIGLPVGIfCLGLLLFLCYFY 86
                778999*************6489******9986 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00021      0.74       7      37 ..      58      88 ..      55      89 .. 0.87
   2 ?   -5.5   3.0         5   1.8e+04       3      10 ..     348     355 ..     345     356 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00021
        SKG6  7 sntvaIavaVaVPVaViiivLlailifvrRR 37
                +++ +I+  ++ PV++  + Ll +l+  + +
  CCD22206.1 58 TSGRTIGLSIGLPVGIFCLGLLLFLCYFYLK 88
                67789********************988855 PP

  == domain 2  score: -5.5 bits;  conditional E-value: 5
        SKG6   3 dssnsntv 10 
                 +++n+nt+
  CCD22206.1 348 NNNNTNTT 355
                 44555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1018  (0.0567795); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 4015.33
//
Query:       CCD22207.1  [L=193]
Description: hypothetical protein NDAI_0A00490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-06   28.8   0.1    2.1e-06   27.9   0.1    1.4  1  Nitroreductase  Nitroreductase family
     0.0035   17.2   0.1     0.0055   16.5   0.1    1.3  1  KH_1            KH domain


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   2.3e-10   2.1e-06       1     147 [.      11     153 ..      11     173 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.3e-10
                     HHH--B---B-S----HHHHHHHHHHH....HTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGG.......HHHHHHH CS
  Nitroreductase   1 irkRrSiRkFddepvpkeelekileaa....rraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrke.......elklkaq 84 
                     i++Rr+i ++++e +    +++i ++      + P+a+n+q  r +++ ++e+ +++++a++++++ ++ +++ +++++++        +++ + 
      CCD22207.1  11 IASRRTIYALKPELPAGVSIKDIQDTIqaviKNTPTAFNSQGNRAIIL-TGETHRQVWDAVAKAIDNEDGKKRPLSVRDEAygsviffTDDKVTE 104
                     789*********987766666666666555788***************.9***********************9999885566655555555555 PP

                     HHHHHSSEEEEE---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGH CS
  Nitroreductase  85 kalagapvlivivatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaa 147
                     k+ a+ p+   +                ++  +++gaa    ++a++ lGlg+  +++  +++
      CCD22207.1 105 KLQADFPAWSAA--------------FPQFGDHSSGAAQISSWTALETLGLGAHLQHYNGYVK 153
                     555555555555..............8888999999999999999999999998888776665 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   6.1e-07    0.0055      18      63 ..      26      72 ..      25      75 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.1e-07
                GGHHHHHHHHHH.T-EEEEESSTT....T.-EEEEEE.SHHHHHHHHHH CS
        KH_1 18 gGsnIkeIreet.gakIkvpksedeg.sderevtisG.speavekAkel 63
                 G +Ik+I++ t +a Ik   + +   +++r + ++G +  +v +A+++
  CCD22207.1 26 AGVSIKDIQD-TiQAVIKNT-PTAFNsQGNRAIILTGeTHRQVWDAVAK 72
                799*******.99*****44.6666689***************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1320.14
//
Query:       CCD22208.1  [L=199]
Description: hypothetical protein NDAI_0A00500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-06   28.4   0.0    2.6e-06   27.6   0.0    1.4  1  Nitroreductase  Nitroreductase family


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.4e-10   2.6e-06       1     168 [.      16     178 ..      16     180 .. 0.79

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.4e-10
                     HHH--B---B-S----HHHHHHHHHHH....HTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSS CS
  Nitroreductase   1 irkRrSiRkFddepvpkeelekileaa....rraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagap 91 
                     i+ Rr+  ++++e + + +le+i +       + P+a n+q+ r +++  +++ +k+++++ ++++ +  +++  + ++   +  +   ++ + +
      CCD22208.1  16 IAARRTLYELKPELPADVTLENIQQVVqsiiKNTPTALNSQENRAIIL-IGDAHKKVWDHVVKAIPGENGKKRPTSARD---EAYGCVIFFTEQN 106
                     688999999999988888888877777666788***************.8999999*********99999998666655...4455555555555 PP

                     EEEEE---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGGGGHHHHHHHHT-S..SEEEEEEEE CS
  Nitroreductase  92 vlivivatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfdeaaeevrkllglpdeeeivvliav 168
                     ++  +    ++   +aa+     a +++ga+  n ++a++ lGlg+  +++ d+++e ++    +p+ + +   +++
      CCD22208.1 107 TVKKF----QQDYPAAASAFPVAASHTTGAVQINSWTALETLGLGCHLQHYNDAVREALN-NYKIPESWTVNSQLSF 178
                     55555....888889999999999999**************************9996544.3456655555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1428.80
//
Query:       CCD22209.1  [L=144]
Description: hypothetical protein NDAI_0A00510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0022   17.9   0.1     0.0034   17.3   0.1    1.3  1  Sars6     Open reading frame 6 from SARS coronavirus


Domain annotation for each model (and alignments):
>> Sars6  Open reading frame 6 from SARS coronavirus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.9e-07    0.0034      11      61 ..      77     128 ..      70     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.9e-07
       Sars6  11 iaeiliiimrtfriaiwnldv.iissivrqlfkpltkknyselddeepmeld 61 
                 i  il +i  tf ia + ++   +  i +  fk + kkn   ldd+e   + 
  CCD22209.1  77 IYFILFLISSTFWIAFFFFEFhFLRRITKGSFKNINKKNKLRLDDDEESRIH 128
                 56699************999736899*******************9976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1094.64
//
Query:       CCD22210.1  [L=361]
Description: hypothetical protein NDAI_0A00520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-84  283.8  21.9    2.1e-84  283.3  21.9    1.2  1  Per1      Per1-like family
  ------ inclusion threshold ------
       0.15   12.3   0.2       0.15   12.3   0.2    3.2  3  DUF5379   Family of unknown function (DUF5379)


Domain annotation for each model (and alignments):
>> Per1  Per1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.3  21.9   2.4e-88   2.1e-84       4     254 ..      74     351 ..      71     352 .. 0.92

  Alignments for each domain:
  == domain 1  score: 283.3 bits;  conditional E-value: 2.4e-88
        Per1   4 lrlllwdCesdCkYqCqheiteerkkegeevvqFhGKWpflrllgiqEpasvlfSllNllvhlkglkklrkeipkssplkkv.........ylvyalvs 93 
                  +l+lwdC sdC+YqCqh it+ r +++ee++qFhGKWpf+r + +qE++s++fS++N++ h+ g++kl+++i++ ++ +           y+ +++++
  CCD22210.1  74 EKLFLWDCISDCDYQCQHVITKMRIEKNEEIYQFHGKWPFVRYFSTQEFFSTIFSIANFVPHYYGFQKLNHRITSIQKSRGQlatlailknYIYVSIAG 172
                 5899*******************************************************************998887777667788999989999**** PP

        Per1  94 lnawvwSaiFHtrDveltEklDYfsAgavvlsglylavvrlfrlarekkrvkllltalllalyllHvlyLllvrfdYtYnmaanvvvgllqnllwllls 192
                 ++aw++S+iFH+rD+ +tEklDYf+Ag++vl+g++++++r++rl++ +k+  +++++++l+++  H+l+L++ +++YtYnm++n+++gllq++l+l l+
  CCD22210.1 173 MFAWIASTIFHWRDLIITEKLDYFFAGLTVLAGFHAILARMVRLDQYSKWH-QYFSICVLLIFSGHILRLYI-DWSYTYNMRFNIFFGLLQYILLLSLA 269
                 ********************************************9987665.9*******************.************************** PP

        Per1 193 lktl..................akklv..slklillvlllllamllEllDFppllrllDAhalwhlaTipltvlwydflvkD 254
                 ++++                  +++ +  ++++++lvl +++am+lE++DF +++ ++DAha+wh++Ti++++++ydf+++D
  CCD22210.1 270 VQNYsylksrriksrsfynlpySRQFFklCFIPTILVLSTAMAMSLEIFDFFSYTFQIDAHAIWHFCTIWPSLILYDFFLSD 351
                 *877888888888888877776333332266************************************************998 PP

>> DUF5379  Family of unknown function (DUF5379)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.0      0.27   2.4e+03      73      89 ..       4      21 ..       2      22 .. 0.77
   2 ?   12.3   0.2   1.7e-05      0.15      18      52 ..     159     193 ..     141     213 .. 0.86
   3 ?    1.6   0.4     0.038   3.4e+02      13      45 ..     234     268 ..     224     290 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.27
     DUF5379 73 lpfflvaiv.vwilkyng 89
                l+f+ v++v vwil+ n 
  CCD22210.1  4 LSFIQVWLVsVWILTSNY 21
                67888998768***9886 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.7e-05
     DUF5379  18 fgylanyvytlglgllsglatllflfiglvilghl 52 
                 +  l ny+y+   g+++ +a+ +f +  l+i+ +l
  CCD22210.1 159 LAILKNYIYVSIAGMFAWIASTIFHWRDLIITEKL 193
                 57899*********************999999877 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.038
     DUF5379  13 iggiifgyla..nyvytlglgllsglatllflfig 45 
                   g i+ ++    y y + + ++ gl  +++l+  
  CCD22210.1 234 FSGHILRLYIdwSYTYNMRFNIFFGLLQYILLLSL 268
                 45555554441258888999999999999988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2630.31
//
Query:       CCD22211.1  [L=237]
Description: hypothetical protein NDAI_0A00530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-19   67.8   0.4    6.8e-19   67.8   0.4    2.4  2  Spindle_Spc25    Chromosome segregation protein Spc25
     0.0028   17.9   3.6     0.0028   17.9   3.6    2.8  3  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
     0.0035   16.3  16.2     0.0052   15.7  16.2    1.3  1  Spc7             Spc7 kinetochore protein
     0.0076   16.8  12.8     0.0076   16.8  12.8    2.5  3  APG6_N           Apg6 coiled-coil region
  ------ inclusion threshold ------
      0.018   15.0   5.6      0.018   15.0   5.6    1.9  2  Laminin_II       Laminin Domain II
      0.032   14.1  19.0       0.05   13.4  19.0    1.3  1  KASH_CCD         Coiled-coil region of CCDC155 or KASH
       0.13   12.4  14.1        0.7   10.0  14.1    2.1  1  Nup54            Nucleoporin complex subunit 54
       0.43   10.5  16.9       0.79    9.6  16.9    1.4  1  SPATA24          Spermatogenesis-associated protein 24
        0.5    8.3   9.3       0.67    7.8   9.3    1.2  1  Prominin         Prominin
       0.64    9.9   4.0        3.4    7.5   0.4    2.6  2  DASH_Dam1        DASH complex subunit Dam1
       0.67   10.1  15.5       0.81    9.8   3.5    2.3  2  DUF848           Gammaherpesvirus protein of unknown function
       0.75   10.1  13.4       0.98    9.7  13.4    1.4  1  zf-C4H2          Zinc finger-containing protein
        1.7    7.8  10.3      0.093   11.9   3.5    1.9  2  FAT              FAT domain
          2    8.4  23.0         40    4.2  21.6    2.9  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
          2    7.4  13.8        3.6    6.6  13.8    1.4  1  Atg14            Vacuolar sorting 38 and autophagy-related su
        2.6    8.5  11.2        7.4    7.1   0.6    3.0  3  DUF4140          N-terminal domain of unknown function (DUF41
        2.9    5.7  11.1        3.7    5.3  11.1    1.2  1  V_ATPase_I       V-type ATPase 116kDa subunit family
        3.2    7.1  28.1        3.8    6.8  23.9    2.4  3  GAS              Growth-arrest specific micro-tubule binding
        4.2    7.7  18.8        2.9    8.2   4.2    3.0  3  Spc24            Spc24 subunit of Ndc80
        4.3    8.4   8.7        3.3    8.7   0.8    3.0  2  PdaC             Deacetylase PdaC
        6.3    6.9  24.2         61    3.6  24.2    2.2  1  UPF0242          Uncharacterised protein family (UPF0242) N-t


Domain annotation for each model (and alignments):
>> Spindle_Spc25  Chromosome segregation protein Spc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2       2.5   2.1e+03      48      67 ..      47      67 ..      36      71 .. 0.55
   2 !   67.8   0.4     8e-22   6.8e-19       2      72 ..     160     231 ..     159     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.5
  Spindle_Spc25 48 leelleeLn.etndlgkFlke 67
                   +++ ++eLn e++ l + l +
     CCD22211.1 47 FKTEMKELNhEQKTLLTRLNK 67
                   555566666444444443444 PP

  == domain 2  score: 67.8 bits;  conditional E-value: 8e-22
  Spindle_Spc25   2 ieedklkfvFtnidpkdperefsftLdvsedtyevlecsPkLe.deeleelleeLnetndlgkFlkevRkaF 72 
                    +++++l f+Ft++d++d ++++++tLdv ++++++l+++P+L+ d++ +el++ Ln++n+l+ Fl+++R+++
     CCD22211.1 160 SQNGTLTFRFTRFDDRDLDKSCQLTLDVAGEEFKILHSNPELDaDTDKQELETLLNSSNNLPLFLVAIRDKL 231
                    6899***************************************999***********************987 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   3.6   3.2e-06    0.0028      44     100 ..      14      68 ..       4      71 .. 0.90
   2 ?    4.0   8.0     0.069        59      25      99 ..      59     137 ..      56     141 .. 0.88
   3 ?   -2.9   0.0         9   7.7e+03      43      50 ..     208     215 ..     194     232 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.2e-06
                   HHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  44 eleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaelekl 100
                   ++++l+++ N+  k+I++++++k    ++i  v++ k+e+k+l+ e+k+l ++l+kl
    CCD22211.1  14 QFNQLKEKMNSFMKNIHEIMNAK--SVDMITTVENFKTEMKELNHEQKTLLTRLNKL 68 
                   6789****************997..7789999*************999999999986 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.069
                   CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT....S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  25 kadvdelleldekrrelqveleelqaerNelskeIgkakkkk....edaeeliaevkelkeelkaleaelkeleaelek 99 
                   k ++ +l +l ++ + l++e++ +++   e+  +++    +      +++++++e+kel + l ++e + ke +++l+ 
    CCD22211.1  59 KTLLTRLNKLRKEEEGLEIEIQTFKTDTDEARTKFQTYQIRRvqlqSQRDSILKESKELETMLHEKELRIKEYKDKLQR 137
                   6678899999999999999999999999999999998887777788999**************************9986 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 9
                   HHHHHHHH CS
  Seryl_tRNA_N  43 veleelqa 50 
                   +ele l +
    CCD22211.1 208 QELETLLN 215
                   22222222 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7  16.2   6.1e-06    0.0052     135     272 ..      17     150 ..      12     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.1e-06
        Spc7 135 qllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleele 233
                 ql e++ + ++++ e++++ +  +    e++++ ++el++e+++l  +l+kl++++e l    + e+++++ + +e+ ++ +  + +  +lq+q++++ 
  CCD22211.1  17 QLKEKMNSFMKNIHEIMNAKSVDMITTVENFKTEMKELNHEQKTLLTRLNKLRKEEEGL----EIEIQTFKTDTDEARTKFQTYQIRRVQLQSQRDSIL 111
                 7778888888999999**************************************66664....579********************************* PP

        Spc7 234 ekieelkeqkseleeeiaeaervleeckgwsesevsrlk 272
                 ++ +el++  +e e +i+e ++ l+++++ ++ ev+ ++
  CCD22211.1 112 KESKELETMLHEKELRIKEYKDKLQRQRQRDNPEVKLYE 150
                 **********************************98765 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  12.8   8.9e-06    0.0076      17     124 ..      11     119 ..       6     122 .. 0.85
   2 ?    0.6   9.2      0.87   7.4e+02      48     104 ..      85     141 ..      80     163 .. 0.53
   3 ?   -2.3   0.0       7.1   6.1e+03      95     105 ..     207     217 ..     192     236 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.9e-06
      APG6_N  17 qleqaekerdaYeeflkklkkekkeeek.qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelle 114
                 ql+q ++ ++++++f+k++++  + ++    + +e+ + e+++l+ e+++ll+ L++l ke+e le e+++ +  +++   + + +  ++ +lq +  +
  CCD22211.1  11 QLDQFNQLKEKMNSFMKNIHEIMNAKSVdMITTVENFKTEMKELNHEQKTLLTRLNKLRKEEEGLEIEIQTFKTDTDEARTKFQTYQIRRVQLQSQRDS 109
                 67777777777777777777554443324678999***************************************************9999999999999 PP

      APG6_N 115 leeeldslea 124
                   +e + le+
  CCD22211.1 110 ILKESKELET 119
                 9999999886 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.87
      APG6_N  48 eleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwre 104
                 +++e++ ++++ +  + +l+++ + + ke +ele  l++ e   ++ +++ +r  ++
  CCD22211.1  85 DTDEARTKFQTYQIRRVQLQSQRDSILKESKELETMLHEKELRIKEYKDKLQRQRQR 141
                 444555555555555555555555555555555555555555555544444443333 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 7.1
      APG6_N  95 eeeeerfwrey 105
                 ++e e  +++ 
  CCD22211.1 207 KQELETLLNSS 217
                 23333333333 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   5.6   2.1e-05     0.018      20     104 ..       7      91 ..       2     112 .. 0.80
   2 ?   -0.8   0.1       1.6   1.4e+03       7      35 ..     109     137 ..     101     151 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-05
                 XXXXX..XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHHHHHHHH CS
  Laminin_II  20 aplsq..nlentkeklseinrsveetnekvk.dankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikelIaqARk 104
                 +pl+q  + +++kek++++ ++++e+ +  + d+ ++++  ++++k+L+++   Ll +l++l++ ee+   l  +i+  k     AR 
  CCD22211.1   7 EPLDQldQFNQLKEKMNSFMKNIHEIMNAKSvDMITTVENFKTEMKELNHEQKTLLTRLNKLRKEEEG---LEIEIQTFKTDTDEART 91 
                 55554336788999999999999998555445999*****************************9999...99999999999999986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.6
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Laminin_II   7 eanetakevleqlaplsqnlentkeklse 35 
                 ++++  ke +  l++ + ++++ k+kl++
  CCD22211.1 109 SILKESKELETMLHEKELRIKEYKDKLQR 137
                 44444445555555555555555555554 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4  19.0   5.9e-05      0.05      45     161 ..      15     136 ..       7     157 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.9e-05
    KASH_CCD  45 ieeLkkklkstQ...qalqkaklle..eEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekdelkkklkeLlkekaeLkkq 138
                  ++Lk+k+ s     + +++ak+++    +e+ k+ +kel+ +++ l ++ ++l ke++ L+++i++ + +    ++  ++ + +  +L ++++++ k+
  CCD22211.1  15 FNQLKEKMNSFMkniHEIMNAKSVDmiTTVENFKTEMKELNHEQKTLLTRLNKLRKEEEGLEIEIQTFKTDTDEARTKFQTYQIRRVQLQSQRDSILKE 113
                 568999988765122567899999844589********************************************************************* PP

    KASH_CCD 139 lheleellaekealleektkqie 161
                  +ele++l eke  ++e + + +
  CCD22211.1 114 SKELETMLHEKELRIKEYKDKLQ 136
                 ************99999887766 PP

>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  14.1   0.00082       0.7      40     124 ..      10     122 ..       3     151 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00082
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS............................---SSHH CS
       Nup54  40 aQqkevaqhrerlkeisdrleeleqkhqletsvrlekakkrhvelshRllrllrkleilrsrgy............................aldaeEe 110
                 +Q ++ +q++e++++  ++++e+++++++++ + +e+ k++ +el h    ll++l+ lr+                               +l+ + +
  CCD22211.1  10 DQLDQFNQLKEKMNSFMKNIHEIMNAKSVDMITTVENFKTEMKELNHEQKTLLTRLNKLRKEEEgleieiqtfktdtdeartkfqtyqirrvQLQSQRD 108
                 688999***************************************************997776644555555555555555555555555555555555 PP

                 HHHHHHHHHHHHHS CS
       Nup54 111 elrarletleaqln 124
                 ++ ++ ++le  l+
  CCD22211.1 109 SILKESKELETMLH 122
                 55555555555555 PP

>> SPATA24  Spermatogenesis-associated protein 24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  16.9   0.00092      0.79      24     152 ..       9     141 ..       2     166 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00092
     SPATA24  24 lerlrrtlrakee.kfvskeefeavkkkl..eeEkveHaktkal.LakEsEkLqfAlgeievLskqlerekkafekalgsvkekaarEskkadqLkekC 118
                 l++l +  ++ke+ +   k++ e ++ k       ve  kt ++ L++E+  L   l+++   ++ le e + f +   + + k ++   +  qL ++ 
  CCD22211.1   9 LDQLDQFNQLKEKmNSFMKNIHEIMNAKSvdMITTVENFKTEMKeLNHEQKTLLTRLNKLRKEEEGLEIEIQTFKTDTDEARTKFQTYQIRRVQLQSQR 107
                 5555544444422122233333333322200335678889986549999999999999999999*********************************** PP

     SPATA24 119 seveseierqeDilnakeneikeLkqrlskqkev 152
                 + + +e + +e +l  ke++ike k++l++q++ 
  CCD22211.1 108 DSILKESKELETMLHEKELRIKEYKDKLQRQRQR 141
                 ******************************9986 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   9.3   0.00078      0.67     212     317 ..      15     120 ..       3     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00078
    Prominin 212 sddLddagkhlgldladtlesnvlpaLaelerllenlkeakeqLeqvnklekeLrksgsqLrdglrgvkrdlnqalsn.lCqseeCskilssleiekld 309
                 +++L++  ++ ++++++ ++++ + +++++e++ +++ke +++ +++   +++Lrk+ + L+  ++  k+d ++a ++ +   +     l+s++  +l+
  CCD22211.1  15 FNQLKEKMNSFMKNIHEIMNAKSVDMITTVENFKTEMKELNHEQKTLLTRLNKLRKEEEGLEIEIQTFKTDTDEARTKfQTY-QIRRVQLQSQRDSILK 112
                 6789999999999*********9************************************************99999984333.3333333333444688 PP

    Prominin 310 tskcldql 317
                  sk+l+++
  CCD22211.1 113 ESKELETM 120
                 88887544 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.4     0.004       3.4       3      24 ..      13      34 ..      11      38 .. 0.88
   2 ?    3.0   0.2       0.1        89       3      21 ..      49      67 ..      39      77 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.004
   DASH_Dam1  3 pafaeLaDsletLdknledLqq 24
                ++f++L+++++ ++kn++++ +
  CCD22211.1 13 DQFNQLKEKMNSFMKNIHEIMN 34
                79***************99865 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.1
   DASH_Dam1  3 pafaeLaDsletLdknled 21
                 +++eL+ + +tL ++l++
  CCD22211.1 49 TEMKELNHEQKTLLTRLNK 67
                2345555555555555555 PP

>> DUF848  Gammaherpesvirus protein of unknown function (DUF848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.8     0.021        18      38     105 ..      14      80 ..       8      95 .. 0.71
   2 ?    9.8   3.5   0.00095      0.81      38     115 ..      97     176 ..      88     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.021
      DUF848  38 QfddarkalrsleqlkrtkeikalveavdteieakkkelslLkklnrkkvarveeLtdkvlelkeevs 105
                 Qf++ ++ ++s+ +  ++    ++v  + t++e+ k+e++ L++ ++  ++r+++L+ +++ l+ e++
  CCD22211.1  14 QFNQLKEKMNSFMKNIHEIMNAKSV-DMITTVENFKTEMKELNHEQKTLLTRLNKLRKEEEGLEIEIQ 80 
                 5555555555544433333333344.455789*************************99999988876 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00095
      DUF848  38 QfddarkalrsleqlkrtkeikalveavdteieakkkelslLkklnrkkvarveeLtdkvlelkee..vsleldsleeaq 115
                 Q    +  +++   lk+ ke++++++  + +i++ k +l+  ++++ ++v+  e+L   + ++ ++  ++++  ++++ +
  CCD22211.1  97 QIRRVQLQSQRDSILKESKELETMLHEKELRIKEYKDKLQRQRQRDNPEVKLYEALLGMEIDASQNgtLTFRFTRFDDRD 176
                 666667778888889*****************************************999999987644566666666655 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  13.4    0.0012      0.98       4     126 ..      17     137 ..       3     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0012
     zf-C4H2   4 eirektleleklknklakevealekeekcleeykkelelLeqEkmaHveeLrlIhaDinalEsvikeaeeekekslekakklyeeykklkeevnelrse 102
                 +++ek++++ k  ++++++   + +    +e++k e+++L++E++  +  L ++++  + lE  i+  +++++++ +k +       +l+++ +++++e
  CCD22211.1  17 QLKEKMNSFMKNIHEIMNAK--SVDMITTVENFKTEMKELNHEQKTLLTRLNKLRKEEEGLEIEIQTFKTDTDEARTKFQTYQIRRVQLQSQRDSILKE 113
                 44555555555555554432..2234467899***************************************************99***********999 PP

     zf-C4H2 103 .lglekledleeeeeellkeeifek 126
                    le++ + +e   +  k ++ ++
  CCD22211.1 114 sKELETMLHEKELRIKEYKDKL-QR 137
                 7888876554443333333333.33 PP

>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.5   0.00011     0.093     203     280 ..      11      87 ..       2      98 .. 0.90
   2 ?   -0.3   1.0      0.56   4.8e+02     203     244 ..     106     153 ..      88     163 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00011
                 HHHHSSCCHHHHCCTSSCCCSS-SS---............HHHHCCCTCCCCCCCCCCCT.S...-SSCCHHHHCCHH CS
         FAT 203 qkealqkLreftsellekkeelqsgleaqkeptnleeftkllarcylkkGewqealqkldwseekieeilqsysaate 280
                 q +++++L+e +++ +++ +e+ ++  +    t++e f++++ ++++++   +++l+kl ++ee  e + q +++ t 
  CCD22211.1  11 QLDQFNQLKEKMNSFMKNIHEIMNAKSVD-MITTVENFKTEMKELNHEQKTLLTRLNKLRKEEEGLEIEIQTFKTDTD 87 
                 6799*********9999999999999999.*******************************************99886 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.56
                 HHHHSSCCHHHHCCTSSCCC....SS-SS---..............HH CS
         FAT 203 qkealqkLreftsellekke....elqsgleaq..keptnleeftkll 244
                 q++ ++k  ++++++l++ke    e++ +l+ q  +++ +++ +++ll
  CCD22211.1 106 QRDSILKESKELETMLHEKElrikEYKDKLQRQrqRDNPEVKLYEALL 153
                 566666667777777777766666555555555445555555555554 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  21.6     0.047        40      24     136 ..      42     140 ..       9     151 .. 0.54
   2 ?    1.4   0.0      0.35     3e+02      44      63 ..     200     219 ..     191     235 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.047
  CENP-F_leu_zip  24 dkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekv 118
                       ven + e+++++++q  + +   + ++e e+l+ ei++ ++ + e ++++++ +  + +L+ +     ++ +eLe++                
      CCD22211.1  42 TTVENFKTEMKELNHEQKTLLTRLNKLRKEEEGLEIEIQTFKTDTDEARTKFQTYQIRRVQLQSQRDSILKESKELETML--------------H 122
                     34555555555555555555555555555555555555555555555555555555555555555555555555555544..............4 PP

  CENP-F_leu_zip 119 qmkeeskaaveeLqtqlk 136
                     + + + k+  ++Lq q +
      CCD22211.1 123 EKELRIKEYKDKLQRQRQ 140
                     444444444444444433 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.35
  CENP-F_leu_zip  44 ileaEtskaevetlkeeiee 63 
                     +l+a+t k+e+etl +  ++
      CCD22211.1 200 ELDADTDKQELETLLNSSNN 219
                     58899999999998766555 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  13.8    0.0042       3.6      33     143 ..      17     138 ..       3     154 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0042
       Atg14  33 klksekeslkkkiekalegke............eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkei...eekkkklaklsdklkkRrs 116
                 +lk++ +s+ k i ++++ k+            e ++l+ + k++ ++l++l+++ + l+ ++q+ k++ ++ + +    ++++ +l++++d++  + s
  CCD22211.1  17 QLKEKMNSFMKNIHEIMNAKSvdmittvenfktEMKELNHEQKTLLTRLNKLRKEEEGLEIEIQTFKTDTDEARTKFqtyQIRRVQLQSQRDSIL-KES 114
                 45555555555555555555555555555777777777777777777777777777777777777777777766553111567777777777773.222 PP

       Atg14 117 dleslqneleerrkkqiaklqdaikri 143
                 +   l+++l+e++ + i+++ d+++r+
  CCD22211.1 115 K--ELETMLHEKELR-IKEYKDKLQRQ 138
                 2..455555554432.23333333333 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.6    0.0086       7.4      58      96 ..      42      80 ..       4      82 .. 0.85
   2 ?    4.5   3.7     0.056        48      49      94 ..      98     141 ..      83     143 .. 0.73
   3 ?   -0.2   0.0       1.6   1.4e+03      20      71 ..     162     214 ..     151     236 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0086
     DUF4140 58 pnreaeeeelkalraeleeledelaaledelaaaearla 96
                +  e++++e+k+l+ e ++l ++l++l++e + +e +++
  CCD22211.1 42 TTVENFKTEMKELNHEQKTLLTRLNKLRKEEEGLEIEIQ 80
                445666668999999999999999999999999998886 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.056
     DUF4140  49 ildvqvervpnreaeeeelkalraeleeledelaaledelaaaear 94 
                 i  vq+++  +r++  +e k+l+  l+e e ++++++d+l++ ++r
  CCD22211.1  98 IRRVQLQS--QRDSILKESKELETMLHEKELRIKEYKDKLQRQRQR 141
                 33344433..333333368*********************999987 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.6
     DUF4140  20 aGtnevtiegLpptldedSlrVe..gaga.atildvqvervpnreaeeeelkalr 71 
                 +Gt + +++ ++    ++S + +   ag+ ++il+ + e ++ ++++e  l++l 
  CCD22211.1 162 NGTLTFRFTRFDDRDLDKSCQLTldVAGEeFKILHSNPELDADTDKQE--LETLL 214
                 566666666666655556655554444555888888888887777776..44444 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  11.1    0.0043       3.7      46     147 ..      12     114 ..       3     169 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0043
  V_ATPase_I  46 ieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakefleee.eeeeeeeeseeeeeekeeeeeees 143
                 ++++++ + k ++  ++ ++  +++  ++ +++e++++e+keln+++++l ++ln+l ++++ le   + ++++ +e +++ ++ + ++ + +++++++
  CCD22211.1  12 LDQFNQLKEKMNSFMKNIHEIMNAKSVDMITTVENFKTEMKELNHEQKTLLTRLNKLRKEEEGLEIEIQTFKTDtDEARTKFQTYQIRRVQLQSQRDSI 110
                 445555555555556677777777777888889999999999999999999999999888888876666666553433333333333332222222222 PP

  V_ATPase_I 144 eeee 147
                  +e+
  CCD22211.1 111 LKES 114
                 2221 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.7     0.057        48      56      92 ..       2      37 ..       1      45 [. 0.80
   2 ?    6.8  23.9    0.0045       3.8      11     123 ..      27     140 ..      17     152 .. 0.85
   3 ?   -3.3   0.0       5.7   4.9e+03     162     169 ..     207     214 ..     184     230 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.057
         GAS 56 nkrlkepLkkaeeeveeLrkqlknyekdkqslknlka 92
                n++ +epL +++ + ++L+++++ + k   +++n+k+
  CCD22211.1  2 NQQRTEPLDQLD-QFNQLKEKMNSFMKNIHEIMNAKS 37
                777888888876.577899999999999988888886 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0045
         GAS  11 neiknYYnditrnNLelIkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehe 109
                 ++i +  n+   + ++++++ K e++el+ +++    +l+++ +e + l+ ++++ + + +e r + ++y+  +++l++++  + +  kel+++ +e+e
  CCD22211.1  27 KNIHEIMNAKSVDMITTVENFKTEMKELNHEQKTLLTRLNKLRKEEEGLEIEIQTFKTDTDEARTKFQTYQIRRVQLQSQRDSILKESKELETMLHEKE 125
                 455555555556667788899************************************************************************999999 PP

         GAS 110 vl.eqrfekvekerd 123
                    ++  +k++++r+
  CCD22211.1 126 LRiKEYKDKLQRQRQ 140
                 851555568888876 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 5.7
         GAS 162 eaqleevl 169
                 +++le++l
  CCD22211.1 207 KQELETLL 214
                 22222222 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.4   2.9e+03      32      43 ..      13      24 ..       2      38 .. 0.51
   2 ?    6.8   3.9    0.0091       7.8       5      60 ..      36      96 ..      32      98 .. 0.69
   3 ?    8.2   4.2    0.0033       2.9      22      70 ..     102     160 ..      92     184 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.4
       Spc24 32 eeleeleeesee 43
                +++++l+e+ ++
  CCD22211.1 13 DQFNQLKEKMNS 24
                344444444443 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0091
       Spc24  5 ekfriakelsdleselesleselaelkeeleeleeesee...keser....ve.detllklklY 60
                + ++++  +++ ++e+++l++e++ l ++l++l +e+e    +   +    ++ de+  k + Y
  CCD22211.1 36 KSVDMITTVENFKTEMKELNHEQKTLLTRLNKLRKEEEGleiE---IqtfkTDtDEARTKFQTY 96
                5667778888888999999999999999999998888774331...234454457766766666 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0033
       Spc24  22 sleselaelkeeleeleeeseekeser.........vedetllklklYrsL.Gielekd 70 
                 +l+s+ ++  +e +ele++ +eke ++         + +++  ++klY+ L G+e++ +
  CCD22211.1 102 QLQSQRDSILKESKELETMLHEKELRIkeykdklqrQRQRDNPEVKLYEALlGMEIDAS 160
                 4555555555555555555555222222222222223366668999***999*999877 PP

>> PdaC  Deacetylase PdaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   5.3       3.1   2.7e+03      30      51 ..      16      45 ..       2     111 .. 0.64
   2 ?    8.7   0.8    0.0039       3.3      38      83 ..     125     170 ..      68     173 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 3.1
                HHHHHHHHHHHHHHHHHHHH..........H CS
        PdaC 30 nkkiekdadkflkeyekeake.........e 51
                n+ +++++++f+k++ +  +          e
  CCD22211.1 16 NQ-LKEKMNSFMKNIHEIMNAksvdmittvE 45
                33.3777777777765544322222222222 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0039
                 HHHHHHHHHHHH.HHHHTT---S-EEEEEEEEEEEE-SSEEEEEEE CS
        PdaC  38 dkflkeyekeakeeakkndfpkrpyelevdyevkynsekilSlsls 83 
                 +  +key+++ + ++++++ ++  ye+   +e++ ++++ l+++++
  CCD22211.1 125 ELRIKEYKDKLQRQRQRDNPEVKLYEALLGMEIDASQNGTLTFRFT 170
                 22355555444435555555559********************987 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  24.2     0.071        61      69     163 ..      43     140 ..       2     141 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.071
     UPF0242  69 kleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiae...dfeelkleleeqLaekqellqeyqetieeqrs 163
                 ++e+ +  ++el+ + kt    l++l++eee L+ e++  ++   + + + q  q++  + +     + + ++ele  L+ek+++++ey+ +++ qr+
  CCD22211.1  43 TVENFKTEMKELNHEQKTLLTRLNKLRKEEEGLEIEIQTFKTDTDEARTKFQTYQIRRVQLQSqrdSILKESKELETMLHEKELRIKEYKDKLQRQRQ 140
                 22223333333334445555588888888888888877777666666666665555555554422245566777888999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2571  (0.143399); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 1619.30
//
Query:       CCD22212.1  [L=471]
Description: hypothetical protein NDAI_0A00540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-13   49.6   0.0      5e-13   49.1   0.0    1.2  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
     0.0015   17.4   0.1     0.0022   16.9   0.1    1.2  1  DUF2207          Predicted membrane protein (DUF2207)
      0.006   16.3   7.1      0.012   15.3   7.1    1.4  1  Yip1             Yip1 domain
  ------ inclusion threshold ------
      0.014   15.4   3.4      0.035   14.1   3.4    1.6  1  PsbX             Photosystem II reaction centre X protein (Ps
       0.27   11.3   0.9       0.45   10.6   0.9    1.3  1  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   1.4e-16     5e-13       1     217 [.      36     311 ..      36     324 .. 0.80

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 1.4e-16
                    EEEEESTG...CHHHHTHHHHHHHHHHHHHHC..........TT.....SEEEEEEEBSCTCHHHHHHHHH....TTCEEEEECCHECSSSTTSSE CS
                    xxxxxxxx...xxxxxxxxxxxxxxxxxxxxx..........xx.....xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   1 ltwNvngq...aspalgssrrsdrladlltay..........da.....DvlgLQEvdddelsriplllal....ggflgasstsptgggggggng 74 
                    lt N++g    ++    +  r +++ad +++           ++     D+++LQE++  e ++      +    +  ++ +     + g  +g g
     CCD22212.1  36 LTLNTWGLkyvSK---HRKERLKAIADQIARCstalsisgitNDsnedyDIIALQEIWVKEDWEYIVKRCGdlypY--HRIF-----YSGILTGPG 121
                    6888888854422...233456667777766665555555551166677*******99998766544443366443..3333.....3789***** PP

                    EEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE.......................CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  75 gavlsrfpltslfrrtfiefndlvaalrreplaakleqlni.......................ashrdhdlvrdlqllalllqvealnadrgapv 147
                    +a+ls+ p++s f + f+ ++++++ lr  + ++k    +                         ++ + ++ ++  +++++ +++ l +  g +v
     CCD22212.1 122 LAILSKIPIKSTFLYRFPINGRPRDVLRGDWYVGKSIAITElepvndqtgplvimnshmhapyaLTGDNAYECHRSCQAWDFSKLIKLYKKAGFSV 217
                    *************************************9999******************************************************* PP

                    EEEEE-SSSTSGGGBSCGHHHHHHCTTTH.........H..............SSCESCETTTTTTTTTTTEB-BEEEEEEC.HHHCCEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........x..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Exo_endo_phos 148 ivaGDfNarpsdddsrvlrtrglalapap.........v..............glyllgggptptyvtraggsrlDrilasp.alalfrsgvlp 217
                    +v+GD+N+rp + +  +l+   ++ + +                           +  + +++ +y      +rlD++l  + +l ++ +g   
     CCD22212.1 218 VVVGDLNSRPGSLPHKFLTLETGLVDSWEqlhgkqdleKissmdplqqleygcTTCDSFLNTWRSYLGTKKAQRLDYALIDSdGLQTIAAGARF 311
                    ********************9999999997776665550566777666777788888888888888888888888*****99999998888665 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1     6e-07    0.0022     349     428 ..     354     432 ..     331     447 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6e-07
     DUF2207 349 kakkfkkalkkwksavkkkergyfdkkgkkklkklsalglgliilglilillallllvlllvfllilllillliaiivll 428
                  ++++ + ++ ++++++    +y++k++++++ + ++++++li+l+ +l+++a l+ ++++    +++l++++iai  ++
  CCD22212.1 354 SQDELVDRYTTYQEGLDC-LHEYMKKAQRQQYLWGIYFWFALILLFGYLLFGARLSSNVTFLSSIFWGLFIIVIAITGTI 432
                 567777778888888887.7889999999999999999999999999999999999998866666666666666655444 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   7.1   3.4e-06     0.012      12      95 ..     376     445 ..     372     451 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.4e-06
        Yip1  12 lkkeppilrapdlallllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliakllg.gkg 95 
                 +kk+++  + +++++ ++++l ll+g+l++   g        +   +++++l++i+ g++  ++ +++ + +   i+ l+g g++
  CCD22212.1 376 MKKAQR--QQYLWGIYFWFALILLFGYLLF---G--------ARLSSNVTFLSSIFWGLF--IIVIAITGTIAGGISFLFGrGEI 445
                 555555..778*******************...3........334445788888888888..58888888888888888876554 PP

>> PsbX  Photosystem II reaction centre X protein (PsbX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.4   9.7e-06     0.035       6      27 ..     411     432 ..     408     435 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9.7e-06
                 HHHHHHHHHHH.HHHHHHHHHH CS
        PsbX   6 aNfllSLvaGalvVvipiaaaL 27 
                   fl+S+++G +++vi+i++ +
  CCD22212.1 411 VTFLSSIFWGLFIIVIAITGTI 432
                 47*****************865 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.9   0.00013      0.45      39      93 ..     391     447 ..     374     462 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
  Phage_holin_3_6  39 llgaagvlallalllllvalalala.alwlaalivaavllvla.gvlalvglkklkk 93 
                      ++++ +++++l +++ l   + +l+ + w  ++iv a+   +a g+  l g+ ++++
       CCD22212.1 391 WFALILLFGYLLFGARLSSNVTFLSsIFWGLFIIVIAITGTIAgGISFLFGRGEIRS 447
                      333333333333333333336777756999999977666555549999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.30s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3404.82
//
Query:       CCD22213.1  [L=1255]
Description: hypothetical protein NDAI_0A00550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-32  112.0   0.0    6.5e-32  110.5   0.0    1.9  1  Glyco_transf_28  Glycosyltransferase family 28 N-terminal dom
    6.1e-27   93.8   3.1    2.7e-23   82.0   0.1    4.0  3  GRAM             GRAM domain
    1.1e-08   34.4   0.0      2e-08   33.5   0.0    1.4  1  UDPGT            UDP-glucoronosyl and UDP-glucosyl transferas
    2.2e-06   28.1   0.2    2.6e-05   24.7   0.2    2.9  2  PH               PH domain
     0.0039   17.2   0.0      0.049   13.6   0.0    2.5  2  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom
  ------ inclusion threshold ------
       0.21   12.0   2.9       0.27   11.7   0.1    2.6  2  PH_11            Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> Glyco_transf_28  Glycosyltransferase family 28 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.0   2.2e-35   6.5e-32       1     139 []     790     927 ..     790     927 .. 0.91

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 2.2e-35
                      EEEEE-SSHHHHHHHHHHHHHHHCTT-EEEEEEETCCCHHHHHHCCT-EEEE---G.........HCTT..CHHHHCCHHHHHHHHHHHHHHHH CS
  Glyco_transf_28   1 ivllggGTgGhvfPalAlakeLkkegheVrylgtkrgleerlveeaglefepiage.........klrrklspknlkeilkvlkavvkakkilk 85 
                      i ll++G++G+v+P++Al k+L+ke+h+V+ ++t+ ++++++ e++gl+f+++ag+         ++++ + +  l++++k        +k+++
       CCD22213.1 790 IGLLTIGSRGDVQPYIALGKGLIKENHNVT-IITHIEFKDFV-ESHGLNFVKLAGNpselmalmvEHES-MNVALLRDASKN-------FKSWI 873
                      6799**************************.**********9.*************9966666555555.666666666666.......***** PP

                      HHHHCCCCCCCCCCCHCCCCCHCCCTTHCCCCCHCTS-ECCCCCCCCC-SCCCE CS
  Glyco_transf_28  86 eakpdavvgtggyvslpaviaaplaripviihEqnaipglanktlsrtatkvai 139
                      ++ ++ +++++   +l  +i++p+a+++++i+E++ ip+++++t+++t+t++++
       CCD22213.1 874 KDLLESSWESCKALNLNLLIESPSAMVGIHIAEALNIPYFRAFTMPWTRTRAYP 927
                      ***************************************************996 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.2   0.00056       1.7       5      49 ..     160     202 ..     156     309 .. 0.69
   2 ?   -1.5   0.0      0.77   2.3e+03      54      92 ..     316     352 ..     305     355 .. 0.63
   3 !   82.0   0.1   9.1e-27   2.7e-23       2     108 ..     615     719 ..     614     722 .. 0.97

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00056
                 HHS----TT--EEEEEEEEEESS.SEEEEEEEEESSEEEEEE-ST CS
        GRAM   5 kkfkellpeEkllatykCyllrdggpvqGrlyltnyrlcFrskpl 49 
                 k+f+ l+++E  l+++ +  l+d ++ qG++ lt+  l F    +
  CCD22213.1 160 KIFG-LPKNEIFLKELPAWTLKD-VLIQGHIILTTASLLFFAYLP 202
                 6899.******************.**************9977666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.77
                 EEEEEGGGEEEEEE....-TT-TT-EEEEESS-..EEEE CS
        GRAM  54 kvvlpladikriekstsaanllengiqvetsskdlelaF 92 
                  + +pl+ i ++ek  s    +  +++++ s++   +aF
  CCD22213.1 316 ALNIPLTNILEVEKDDSLETAIILKVRAMESKE--TFAF 352
                 3778**********6665555555555554444..5666 PP

  == domain 3  score: 82.0 bits;  conditional E-value: 9.1e-27
                 HHHHHS----TT--EEEEEEEEEESS.SEEEEEEEEESSEEEEEE-STT---EEEEEGGGEEEEEE....-TT-TT-EEEEESS-..EEEEE--TTHHH CS
        GRAM   2 lfrkkfkellpeEkllatykCyllrdggpvqGrlyltnyrlcFrskplgsskkvvlpladikriekstsaanllengiqvetsskdlelaFagfvtrde 100
                  fr++f+ l++ E l ++y+++l+r+ +p +G++yl n+++cFrs+ +gs+++++lpl d++ ++k+++ +  +++++ v+ ++++l ++Fa++ +r++
  CCD22213.1 615 HFRNHFN-LPKRETLTSSYFAHLVRN-VPLYGKIYLGNNFICFRSLLPGSNTRMILPLHDVETCYKENGFRFGYCGLVIVIKGHEELFFEFASTLSRND 711
                 69*****.******************.************************************************************************ PP

                 HHHHHHHH CS
        GRAM 101 aiefieel 108
                 ++ +i++ 
  CCD22213.1 712 CELIILKR 719
                 **999875 PP

>> UDPGT  UDP-glucoronosyl and UDP-glucosyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   6.8e-12     2e-08     274     411 ..    1036    1179 ..     939    1193 .. 0.67

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 6.8e-12
       UDPGT  274 ehGvvvfSlGsmvseipeekanaiAsaLakipqkvl....W..rfdgkkPstLaknt..llvk..WlPqndlLgHPktkAFvtHaGangvyEaisnG 360 
                  ++ +v++ +Gs+v   + e   a+ +a++k     +    W  r+ ++  ++L+ n    +++   +P   l   P++ A v H+G+ +   ++ +G
  CCD22213.1 1036 QKKLVYIGFGSIVVSNAKEMTIALIKAVEKADVYCIlnkgWsdRLGDESAKNLEVNLpsCVFNagNVPHDWL--FPQVDAAVHHGGSGTTGASLRSG 1130
                  456778888887777777767777777777765544344443334456666666665543333113554443..6********************** PP

       UDPGT  361 vPmvglPlFgdqrdNikrmeakgaavtlnvkemtsedllnAlkevindksy 411 
                  +P ++ P+Fgdq   + r+e  g +++l  k++ +e+l++Alke+  +k  
  CCD22213.1 1131 LPTIIKPFFGDQFFYATRIEDMGVGIAL--KKFNTENLASALKEITTNKKM 1179
                  *********************9988776..6899***********998854 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.2   8.8e-09   2.6e-05       2     103 ..     209     303 ..     202     305 .. 0.81
   2 ?   -1.1   0.0      0.88   2.6e+03      63      95 ..     675     711 ..     657     711 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 8.8e-09
                 EEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC.TTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHH CS
          PH   2 vkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevva.tedpkrkfcfelriverngsrtyllqasseeerkeWika 99 
                  k+G+L  ++s ++    ++w+vL+d  +++y ++     + p  +i+l++++  e+++  +  ++  +f+++++    +rt+ + a+s  ++++W k 
  CCD22213.1 209 LKSGNLNIRSSLRG--SIRYWAVLRDHLFYLYNSP--TDVYFPALTIDLRTVTNIEIQKsFRLHENTKYFKIVTT----ERTLKFMADSINSASDWTKM 299
                 45666666666664..455******9999999999..999****************9965446666667777666....69****************** PP

                 HHHH CS
          PH 100 iqsa 103
                 +++ 
  CCD22213.1 300 LKKQ 303
                 9986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.88
                 SSSSTSEEEE.....EESTSSSTEEEEEEESSHHHHHH CS
          PH  63 dpkrkfcfel.....riverngsrtyllqasseeerke 95 
                 ++ +++ f++     +iv +++ ++++++++s  +r++
  CCD22213.1 675 TCYKENGFRFgycglVIVIKGH-EELFFEFASTLSRND 711
                 5566777777777777777788.********9988875 PP

>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.12   3.7e+02      69     139 ..    1041    1112 ..    1009    1116 .. 0.87
   2 !   13.6   0.0   1.6e-05     0.049      74     150 ..    1112    1182 ..    1107    1196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.12
                       HHHHH-EEEECS-CHHHHHHHHTT--EEEE--TT.....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHH CS
  Glyco_tran_28_C   69 aikaadLvIsRAGagtiaEllalgkplIlvplpeaae.nhqdnNakelekagaalvleqkeltpekLeeall 139 
                       +i   ++v+s A  +tia + a+ k  ++++l ++ +  + d+ ak le ++  +v+   +++ ++L  +++
       CCD22213.1 1041 YIGFGSIVVSNAKEMTIALIKAVEKADVYCILNKGWSdRLGDESAKNLEVNLPSCVFNAGNVPHDWLFPQVD 1112
                       5666789************************9999876899999****999999999988888888877776 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.6e-05
                       -EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-STTCHHHHHHHHCCS---S-- CS
  Glyco_tran_28_C   74 dLvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkeltpekLeeallelaaeklrlae 150 
                       d  + ++G gt   +l+ g+p+I+ p+      +q   a  +e+ g+++ l++ ++  e+L++al+e+ ++k+   +
       CCD22213.1 1112 DAAVHHGGSGTTGASLRSGLPTIIKPFFG----DQFFYATRIEDMGVGIALKKFNT--ENLASALKEITTNKKMSDK 1182
                       56788**********************99....**************999988777..*************985322 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   9.2e-05      0.27      16     104 ..     225     302 ..     212     303 .. 0.92
   2 ?   -1.5   0.4       1.2   3.5e+03       9      60 ..     496     536 ..     489     571 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.2e-05
       PH_11  16 rwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaalfkidsirssksddllleistetkifflkgdsneeteeWvealke 104
                 r+ avl+d  + +Y+s+++++              l  dl    + +i+++   +++ + ++i t+ +++ + +ds +   +W + lk+
  CCD22213.1 225 RYWAVLRDHLFYLYNSPTDVY-----------FPALTIDLRTVTNIEIQKSFRLHENTKYFKIVTTERTLKFMADSINSASDWTKMLKK 302
                 6666*****************...........78999999999999***************************************9996 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
       PH_11   9 gskaWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaal 60 
                 +sk  +r w+ ++ ++vL+  ++ek             s+  l+a +i+++ 
  CCD22213.1 496 KSK--RRHWLHKRSPSVLHDKNQEKITL---------ESHSTLQAPIIKYEY 536
                 344..78899888888887655555544.........444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.83u 0.26s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 8730.43
//
Query:       CCD22214.1  [L=714]
Description: hypothetical protein NDAI_0A00560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-59  202.2   7.0    1.6e-59  201.8   7.0    1.1  1  ABC_membrane     ABC transporter transmembrane region
    5.4e-30  104.7   0.0    1.3e-29  103.5   0.0    1.7  1  ABC_tran         ABC transporter
    5.6e-06   26.0   0.8      0.001   18.6   0.8    2.5  1  SMC_N            RecF/RecN/SMC N terminal domain
     0.0012   19.2   0.1     0.0042   17.5   0.0    1.9  2  AAA_16           AAA ATPase domain
     0.0016   18.2   0.0     0.0047   16.6   0.0    1.8  1  AAA_29           P-loop containing region of AAA domain
     0.0034   16.2   0.0     0.0055   15.6   0.0    1.2  1  ABC_ATPase       Predicted ATPase of the ABC class
     0.0083   15.4   0.0      0.015   14.6   0.0    1.3  1  Zeta_toxin       Zeta toxin
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.029   14.4   0.0    1.7  1  DUF87            Helicase HerA, central domain
      0.013   16.0   0.0        0.2   12.2   0.0    2.4  2  AAA_18           AAA domain
      0.015   15.6   0.1      0.092   13.0   0.1    2.3  1  AAA_22           AAA domain
      0.016   15.5   1.5      0.068   13.5   0.5    2.3  2  Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
      0.017   15.3   0.0      0.088   13.0   0.0    2.1  2  AAA_33           AAA domain
      0.058   13.1   0.0       0.11   12.1   0.0    1.4  1  AAA_24           AAA domain
       0.08   12.8   0.0       0.23   11.4   0.0    1.7  1  RsgA_GTPase      RsgA GTPase
       0.14   12.0   1.8       0.76    9.5   0.3    2.4  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8   7.0   1.3e-62   1.6e-59       2     270 ..     112     395 ..     111     399 .. 0.97

  Alignments for each domain:
  == domain 1  score: 201.8 bits;  conditional E-value: 1.3e-62
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH...............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldkgdpet...............ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkk 83 
                    l++l+++++  +s+ +p+++g++ld   + ++ +                 + ++++++l +l+l+ +i+++++  +l vtgerl+ rlr++++k+
    CCD22214.1 112 ALALLFILISSSVSMTVPSIIGKLLDAAKKGQKENEeedsktivpditffgLTRTQFYTALGVLFLVGAIANTGRIIILKVTGERLVARLRTRTMKA 208
                   5899************************9974444477899**********999******************************************* PP

                   HHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  84 ilrqpmsffdtnsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakas 180
                    l q+  f d n+vG+l+srl++d++ ++ ++++++++ ++++++ ++g+++m yl+wklt v++ ++p + +++ v+++++++l+k+ q++v+ +s
    CCD22214.1 209 ALDQDATFLDANRVGDLISRLSSDAAIVSKAVTQNVSDGTRAIIQGFVGFGMMGYLSWKLTGVMMLMVPPLGIMALVYGRKIRNLSKQLQESVGGLS 305
                   ************************************************************************************************* PP

                   HHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHH CS
  ABC_membrane 181 svaeEslsgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfail 270
                   +vaeE+l++ +t++a+ +e+ +++++  +++++ ++g+k a+++gl++g t l+g+++++  l++Gt +++sg+l+vg+l  f++++ + 
    CCD22214.1 306 KVAEEQLNATKTIQAYVGERLEIHRYATEVRNVFRIGLKEAVTSGLFFGSTGLVGNIAMISLLLVGTNMIQSGTLTVGELSSFMMYAVYT 395
                   *************************************************************************************98765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.0   1.1e-32   1.3e-29       2     137 .]     464     617 ..     463     617 .. 0.86

  Alignments for each domain:
  == domain 1  score: 103.5 bits;  conditional E-value: 1.1e-32
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH............HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren............esdeeieka 88 
                 +n++l++++ge v ivG +G+GKSt+++ll++ ++ ++G+i++ ++d+++ +l+++r+ ig+++qep+lf+++ + +n            ++ e+++ a
  CCD22214.1 464 DNLNLEINPGEHVCIVGFSGSGKSTIASLLLRYYDVNNGSIRIGDNDIRNFSLRKYRRLIGTVQQEPSLFNGS-ILDNiiyaippeltseKQHERVQLA 561
                 89***********************************************************************.99999********776333333333 PP

                 HHHSTTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  89 lsklglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +++ + +          +t v+ ++++LSgGqkqr+alara+l +p+ll+lDE t+
  CCD22214.1 562 IKQANCNIflgkfpdGLQTLVGPRGAQLSGGQKQRIALARAFLLDPTLLILDESTS 617
                 3333333344444445688888888****************************995 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.8   8.6e-07     0.001     135     211 ..     559     660 ..     458     668 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 8.6e-07
                 T............................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC CS
                 x............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
       SMC_N 135 e............................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfivislreemlek 204
                 +                            +LSgG+k+ +ala  f +   +p  l +lDe  +aLD    + va+ l+++s +    i i++r  ++++
  CCD22214.1 559 QlaikqancniflgkfpdglqtlvgprgaQLSGGQKQRIALARAFLL---DP-TLLILDESTSALDSLSEELVAKTLQARSARgLTTISIAHRLSTIKH 653
                 044444444444444444444444444449********999988755...34.599**********************88877689999****999999 PP

                 -SCEEEE CS
                 xxxxxxx RF
       SMC_N 205 adklvgv 211
                 +++++ +
  CCD22214.1 654 SSRVIVI 660
                 9988866 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       9.2   1.1e+04      77     103 ..     193     219 ..     173     239 .. 0.66
   2 !   17.5   0.0   3.5e-06    0.0042      25     167 ..     474     639 ..     460     642 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.2
      AAA_16  77 areellrqlldeaesaeleawreklee 103
                 + e+l++ l +++ +a+l++++++l++
  CCD22214.1 193 TGERLVARLRTRTMKAALDQDATFLDA 219
                 355666666666666666666665554 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3.5e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggif.lrgkcdqlesaipysalaqalareellrqllde....................aesaeleawrekle 102
                 e v ++G sG+GKs+++  llr++  ++g   +  +  ++         ++   r +l+  + +e                    ++++++e+ +    
  CCD22214.1 474 EHVCIVGFSGSGKSTIASLLLRYYDVNNGSIrIGDNDIRN---F----SLRKY-R-RLIGTVQQEpslfngsildniiyaippelTSEKQHERVQL--- 560
                 8999******************999986555233333333...1....22222.2.4444444443333333333455544332322222222222... PP

      AAA_16 103 eala.......................avpelagaeasrllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlrlleskpl 167
                    a                        +++l+g +++r++ + +++l       +p++l+lD+    +d+ s +l a +l++++++ l
  CCD22214.1 561 ---AikqancniflgkfpdglqtlvgpRGAQLSGGQKQRIALA-RAFL------LDPTLLILDESTsALDSLSEELVAKTLQARSARGL 639
                 ...1234445677777777777666666666666666666555.4444......23799999987767788899998888888877665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.9e-06    0.0047       9      38 ..     460     489 ..     458     494 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.9e-06
      AAA_29   9 WgtfdghtieidlkgatlltGpsGsGKSTl 38 
                    fd+  +ei++ + + ++G sGsGKST+
  CCD22214.1 460 HKIFDNLNLEINPGEHVCIVGFSGSGKSTI 489
                 56799999****999**************8 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.6e-06    0.0055     296     405 ..     561     670 ..     554     712 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.6e-06
                 -EEEE--TTTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS-GGG--B--HHHCHHHHHHHH--EEEE CS
  ABC_ATPase 296 svkgvDispFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvskekepitplvdrvrelykklgvstil 393
                 ++k+++   F+++ P g +t      ++ SG   q  ++++a  ++ +ll++DE tsA   +     ++ l +++++++t++ + +++l +    s ++
  CCD22214.1 561 AIKQANCNIFLGKFPDGLQTLvGPRGAQLSGGQKQRIALARAFLLDPTLLILDESTSALDSLSEELVAKTLQARSARGLTTI-SIAHRLSTIKHSSRVI 658
                 688999999**********9967788999**********************************9999************996.5778888889999*** PP

                 EESS-GCCTTT- CS
  ABC_ATPase 394 vvggsgdyldvA 405
                 v+g  g  ++++
  CCD22214.1 659 VIGKYGSVVESG 670
                 ***999888765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.2e-05     0.015      19      57 ..     476     514 ..     462     533 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-05
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57 
                 + ++G +G+GKs++a+ll ++ + +++ +r+   d+R++
  CCD22214.1 476 VCIVGFSGSGKSTIASLLLRYYDVNNGSIRIGDNDIRNF 514
                 678999*******************************98 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.5e-05     0.029      24      45 ..     474     495 ..     465     504 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.5e-05
       DUF87  24 rHlAilgsTGsGKSntvavLle 45 
                 +H++i+g +GsGKS+ +++Ll+
  CCD22214.1 474 EHVCIVGFSGSGKSTIASLLLR 495
                 7*******************97 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.56   6.7e+02      96     117 ..     184     208 ..     137     220 .. 0.81
   2 ?   12.2   0.0   0.00016       0.2       1      21 [.     476     496 ..     476     531 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.56
      AAA_18  96 k...vvLtaspeelleRlekRgyee 117
                 +   ++L++  e l  Rl++R  + 
  CCD22214.1 184 TgriIILKVTGERLVARLRTRTMKA 208
                 146799***************8765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00016
      AAA_18   1 IlltGtpGvGKttlakeLskr 21 
                 +++ G +G+GK+t+a  L + 
  CCD22214.1 476 VCIVGFSGSGKSTIASLLLRY 496
                 79**************99443 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   7.7e-05     0.092       6      38 ..     474     518 ..     470     664 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.7e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee............e 38 
                  +++++G sG+GK+t +  ll+ +d  +   +            +
  CCD22214.1 474 EHVCIVGFSGSGKSTIASLLLRYYDVNNGSIRigdndirnfslrK 518
                 5889****************9998866555556666665555541 PP

>> Phage_int_SAM_1  Phage integrase, N-terminal SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.1   1.4e+03      22      58 ..     286     327 ..     284     344 .. 0.48
   2 ?   13.5   0.5   5.7e-05     0.068      32      74 ..     611     652 ..     604     654 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.1
                      HHHHHHHHHHHHHH.....TS--TTT--HHHH.HHHHHS--- CS
  Phage_int_SAM_1  22 YrrdLrrflkflae....rgkesleqlttedv.raflaelee 58 
                      Y r++r ++k l+e      k + eql++    +a++ e++e
       CCD22214.1 286 YGRKIRNLSKQLQEsvggLSKVAEEQLNATKTiQAYVGERLE 327
                      555566666666653222222233333322223555555544 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 5.7e-05
                      HHHH.TS--TTT--HHHHHHHHHS----------HHHHHHHHH CS
  Phage_int_SAM_1  32 flaergkesleqlttedvraflaeleeeglsatslarrlsalr 74 
                       l+e   ++l++l++e v++ l+++ ++gl++ s+a rls+++
       CCD22214.1 611 ILDE-STSALDSLSEELVAKTLQARSARGLTTISIAHRLSTIK 652
                      5666.7899********************************98 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.4   2.9e+03     100     122 ..     186     208 ..     177     242 .. 0.68
   2 ?   13.0   0.0   7.4e-05     0.088       2      79 ..     476     566 ..     476     570 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.4
      AAA_33 100 rivvvetdeetlkeRlakRaang 122
                 ri+++++  e l +Rl+ R  + 
  CCD22214.1 186 RIIILKVTGERLVARLRTRTMKA 208
                 56677777777777777776543 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 7.4e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg....avllssdtlrr.rlfg......tdqqsktdytr.vldr.lyqilnelarkalsagrnvildatn 79 
                 v +vG +GsGKst a  ll+  +     +++  +++r+  l++      t qq ++  +  +ld+ +y+i  el  +++ ++ ++ + + n
  CCD22214.1 476 VCIVGFSGSGKSTIASLLLRYYDvnngSIRIGDNDIRNfSLRKyrrligTVQQEPSLFNGsILDNiIYAIPPELTSEKQHERVQLAIKQAN 566
                 5689*************98766666669999998855554444344444444444422223444425555555666666666666555555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.6e-05      0.11       5      67 ..     476     534 ..     473     563 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.6e-05
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvelaaeladyk 67 
                 ++i+G sg+GK+t+a+ l     + d+++G+ ++ ++++ +  s+ + +  + ++++e++ ++
  CCD22214.1 476 VCIVGFSGSGKSTIASLL---LRYYDVNNGSIRIGDNDIRNF-SLRKYRRLIGTVQQEPSLFN 534
                 89****************...999***********9999876.55555555555555555555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019      0.23      82     131 ..     455     505 ..     441     512 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
                  --TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  82 vsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                   s  +++ +++l+ +++  + +++vG SG GKSt+   ll   +++ g+++
   CCD22214.1 455 PSRPNHKIFDNLNLEINPgEHVCIVGFSGSGKSTIASLLLRYYDVNNGSIR 505
                  5566677788888888877999**************999988777777765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00064      0.76       3      55 ..     477     529 ..     476     541 .. 0.90
   2 ?    0.9   0.1      0.26   3.1e+02     236     265 ..     588     614 ..     537     629 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00064
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpe 55 
                 +++G  gsGKS++  +l    ++++ +++ +d++ +++++rk+++l+ + + e
  CCD22214.1 477 CIVGFSGSGKSTIASLLLRYYDVNNGSIRIGDNDIRNFSLRKYRRLIGTVQQE 529
                 689999***********999999*********************999877665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.26
      AAA_21 236 elSdGtkrllalltallralkkgsllliDE 265
                 +lS G+k+ +al+ a+l ++   +ll++DE
  CCD22214.1 588 QLSGGQKQRIALARAFLLDP---TLLILDE 614
                 67*******9*******999...******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 4604.08
//
Query:       CCD22215.1  [L=1004]
Description: hypothetical protein NDAI_0A00570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-07   29.3   0.6    2.2e-06   28.1   0.1    1.9  2  PH         PH domain
  ------ inclusion threshold ------
      0.019   13.4   0.0      0.033   12.7   0.0    1.2  1  IDH        Monomeric isocitrate dehydrogenase
       0.12   12.6   0.6       0.32   11.3   0.6    1.7  1  BLOC1_2    Biogenesis of lysosome-related organelles complex-


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   3.7e-10   2.2e-06       3     103 ..      97     218 ..      95     220 .. 0.74
   2 ?   -3.3   0.1       2.2   1.3e+04       5      27 ..     257     278 ..     248     300 .. 0.67

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 3.7e-10
                 EEEE..EEEETSSSSC....SEEEEEEEEETTEEEEESST............TCTTESSEEEEEESTTEEEEEEEC.....TT.SSSSTSEEEEEESTS CS
          PH   3 keGw..Llkkgsgkkk....swkkrwfvLkdsellyyknd............ksekdkepkgsislsncevvevva.....te.dpkrkfcfelriver 77 
                 ++G+  +l++ +++++    +wk+ +  L +++l+++++             k +k  ++ + i+ ++++++  +      te + + + ++++ ++  
  CCD22215.1  97 HKGIflILHDLKNDGTpadrRWKHVYGLLLGTQLALWDANeisantsnnskeKLKKLASKPNYINFTDATIRPLDPndeirTEhMQDLDDVLVISTT-- 193
                 56664333333333334559*************************9999888777888889999999999998876555553334444444444333.. PP

                 SSTEEEEEEESSHHHHHHHHHHHHHH CS
          PH  78 ngsrtyllqasseeerkeWikaiqsa 103
                   +++y+l++s+ e+ ++W +a++ +
  CCD22215.1 194 L-KNRYFLKFSDTESYNQWFAALRLS 218
                 4.4********************865 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.2
                 EEEEEETSSSSCSEEEEEEEEET CS
          PH   5 GwLlkkgsgkkkswkkrwfvLkd 27 
                  w++ + ++    wk++++++++
  CCD22215.1 257 DWVSVRFGTGM-PWKRCFAIISQ 278
                 44444444444.67777666664 PP

>> IDH  Monomeric isocitrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.5e-06     0.033     316     388 ..     296     369 ..     287     388 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.5e-06
                 HHHGGGS--B-EEETTTTEETTS-TTTSBHHHHHHHHHHTTSEEE-TTS-EEEEEEE-S--TTTH.HHHHHHHH CS
         IDH 316 eavlekrpelamvdsdkgitnlhvpsdviiDasmpavirdsgkmwnkdgkekdtkaviPdrsyak.vyqevied 388
                 ++ ++k+ ++a v+  k +  ++ +s +++D+s    i  s  m+++++ ++    ++Pd+  a   y+++i +
  CCD22215.1 296 NKKIKKTNAMATVNEAKSLCAVYPSSPLLVDSSTIIKIEGSVTMHKNEDPQETSIFIMPDKHQAVpGYDTIIRF 369
                 566789999***************************************************99885258888776 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6   5.3e-05      0.32      31      94 ..     704     767 ..     690     769 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.3e-05
     BLOC1_2  31 aasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeavseLDeyskeLEak 94 
                 a ++ y++++++ ++ +++ ek++ + ++++ + ++i +ie +++++ ++ ++ D+   eL++ 
  CCD22215.1 704 AFTSTYHDIQEEEEEGNNDNEKYDDTIDKFETLARRISDIELKTDRFDSTTNKFDSLGIELQNS 767
                 567889***************************************************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       941  (0.0524848); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.48
# Mc/sec: 6249.70
//
Query:       CCD22216.1  [L=89]
Description: hypothetical protein NDAI_0A00580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-27   94.1  10.8    7.2e-27   93.3  10.8    1.4  1  Ribosomal_L37e  Ribosomal protein L37e
     0.0072   16.3   1.3      0.011   15.7   1.3    1.3  1  DZR             Double zinc ribbon
  ------ inclusion threshold ------
      0.025   14.6   0.6       0.03   14.4   0.6    1.3  1  SelR            SelR domain
        1.2    8.6   4.6       0.68    9.4   2.8    1.5  2  DUF1258         Protein of unknown function (DUF1258)


Domain annotation for each model (and alignments):
>> Ribosomal_L37e  Ribosomal protein L37e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3  10.8   1.6e-30   7.2e-27       2      54 .]       3      54 ..       2      54 .. 0.97

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 1.6e-30
  Ribosomal_L37e  2 kGtssfGkrqkkktHilCrrCgkrsyhvqkktCascGypsaklrkynWsaKak 54
                    kGt+s+Gkr ++k+H+lC+rCg+rs+hvqkktCa cGyp+ak+r+ynW+aK+k
      CCD22216.1  3 KGTPSLGKR-HNKSHTLCNRCGRRSFHVQKKTCAGCGYPAAKTRSYNWGAKSK 54
                    9********.****************************************975 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.3   2.4e-06     0.011       8      41 ..      12      44 ..       6      47 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.4e-06
         DZR  8 lppdarfCseCgtk...lkavaaedrCpsCgekvdpe 41
                ++++   C++Cg +   ++    +++C  Cg+++ ++
  CCD22216.1 12 HNKSHTLCNRCGRRsfhVQ----KKTCAGCGYPAAKT 44
                5667779*****9955544....899****9997665 PP

>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.6   6.8e-06      0.03      29      80 ..      10      61 ..       3      83 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.8e-06
                S--SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTS CS
        SelR 29 kekekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgm 80
                k ++k    c  cg   f+ ++k  +gcG+p+ ++   +   k k+ t++g+
  CCD22216.1 10 KRHNKSHTLCNRCGRRSFHVQKKTCAGCGYPAAKTRSYNWGAKSKRRTTTGT 61
                667777889**********************987776665555555555554 PP

>> DUF1258  Protein of unknown function (DUF1258)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.8   0.00015      0.68      12      40 ..      12      42 ..       7      50 .. 0.72
   2 ?   -1.1   0.1      0.23     1e+03     220     245 ..      53      80 ..      37      84 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00015
     DUF1258 12 nfsthkfcnkcGkvvak..sekcelcggkva 40
                +  +h++cn+cG+   +  +++c  cg + a
  CCD22216.1 12 HNKSHTLCNRCGRRSFHvqKKTCAGCGYPAA 42
                45689*******9765411566888886655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.23
     DUF1258 220 geerkesrkGslt..vedslngvnGfke 245
                  ++r+++ +G +    + s++ +nGf++
  CCD22216.1  53 SKRRTTTGTGRMRylKHVSRKFKNGFQS 80 
                 3334444445443114567888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 629.03
//
Query:       CCD22217.1  [L=538]
Description: hypothetical protein NDAI_0A00590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-08   34.3   0.6    9.1e-08   32.3   0.1    2.5  2  FHA           FHA domain
    0.00067   19.9   0.1      0.038   14.3   0.0    3.2  3  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1     1e-11   9.1e-08       1      47 [.     142     189 ..     142     231 .. 0.87
   2 ?   -3.2   0.0       1.2   1.1e+04      39      48 ..     296     305 ..     279     324 .. 0.48

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1e-11
                 EEEESS.TTSSEETTS.TTSTTTEEEEEEETTCEEEEEEEESSSSSEEE CS
         FHA   1 vtiGRs.sdcdivldd.psiSrkHalikfdkgsgkvyleDlgSknGtfv 47 
                 ++iGR   +cd+ l+  + iSrkHa i++ ++s++v+le lg +nG  v
  CCD22217.1 142 IIIGRQsTSCDVTLPKlKHISRKHASISYISSSNQVRLECLG-SNGLVV 189
                 58****889******7688**********************9.899877 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.2
                 ESSSSSEEET CS
         FHA  39 lgSknGtfvN 48 
                 ++ +n +  N
  CCD22217.1 296 VNNSNHVSAN 305
                 2233333333 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.081   7.2e+02      47      84 ..      22      59 ..      16      65 .. 0.84
   2 !   14.3   0.0   4.2e-06     0.038      16      57 ..     139     184 ..     131     190 .. 0.80
   3 ?   -0.5   0.0      0.17   1.6e+03      44      82 ..     279     324 ..     258     328 .. 0.48

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.081
                  TTEEEEEE-CESS--EETTEE-SECC--TTSEEEETTE CS
  Yop-YscD_cpl 47 eesvrledlgsrngllvngerveelelrpgdvlelGtt 84
                  + + ++++ +s+ + lvn+ ++++ +lr+ +  ++G++
    CCD22217.1 22 AADASIDSNDSTFSELVNDSPITSNNLRAVTLGKVGNV 59
                  556678888999999********999999999999876 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 4.2e-06
                   TEEEEEES-TT.-SEE---.TTS-TT-EEEEEE..TTEEEEEE-CE CS
  Yop-YscD_cpl  16 egevviGsded.cDivLsD.kevsrkhlkLeve..eesvrledlgs 57 
                    ++++iG++++ cD+ L   k +srkh++++    +++vrle lgs
    CCD22217.1 139 AQTIIIGRQSTsCDVTLPKlKHISRKHASISYIssSNQVRLECLGS 184
                   5789*************988**********8752266777776555 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.17
                   EEETTEEEEEE-CESS--EETTEE-S.ECC.......--TTSEEEET CS
  Yop-YscD_cpl  44 eveeesvrledlgsrngllvngerve.ele.......lrpgdvlelG 82 
                   +  +e+v+++d ++ n ++ n++ v+ +++       +++ + + +G
    CCD22217.1 279 SDLNEGVTISD-DNDNAIVNNSNHVSaNSSvfgpeqsIEASTPIRIG 324
                   44567777773.33344444444444222132222235555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3622.10
//
Query:       CCD22218.1  [L=798]
Description: hypothetical protein NDAI_0A00600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-35  121.3   1.0    8.3e-35  119.2   0.1    2.6  2  Swi6_N          Swi6 N-terminal domain
    6.3e-11   42.7   2.7    0.00017   22.1   0.2    2.9  3  Ank_2           Ankyrin repeats (3 copies)
    1.3e-10   40.5   0.7    0.00031   20.9   0.0    4.3  4  Ank_3           Ankyrin repeat
    6.8e-10   39.0   4.6    6.2e-05   23.2   0.1    3.4  3  Ank_5           Ankyrin repeats (many copies)
    8.4e-07   29.2   1.2      0.079   13.4   0.1    3.1  2  Ank             Ankyrin repeat
    2.6e-06   27.9   0.5      0.035   14.7   0.0    4.3  4  Ank_4           Ankyrin repeats (many copies)
     0.0011   19.5   7.3     0.0021   18.6   6.1    2.2  1  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
  ------ inclusion threshold ------
      0.047   13.3   3.5       0.11   12.1   3.5    1.5  1  Phage_GPO       Phage capsid scaffolding protein (GPO) serine
       0.12   12.7   6.6      0.065   13.5   3.2    2.3  2  MSV199          MSV199 domain
        1.4    9.6   4.0       0.76   10.4   1.3    2.1  1  DUF883          Bacterial protein of unknown function (DUF883
        6.2    5.8  11.8         13    4.7  11.8    1.5  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
        7.2    6.1  10.6         24    4.3  10.6    1.9  1  Exonuc_VII_L    Exonuclease VII, large subunit
        8.9    6.7  10.3        8.8    6.7   6.1    2.6  2  OmpH            Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> Swi6_N  Swi6 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.1     6e-38   8.3e-35       3     106 ..      20     114 ..      18     116 .. 0.93
   2 ?   -2.4   0.1       3.9   5.3e+03      28      97 ..     222     236 ..     178     272 .. 0.63

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 6e-38
      Swi6_N   3 evtkligdseekvpltLkrdnetgyfllkallplLkqlaekekendieldkleeiseeqedkllskyGilVdtddegekWitedKafeLldllnlldlf 101
                 ++++++ +   k++ltLk+d+e+gy+ll++l++lL++++++ ++n++         eeqedk+++kyGilVdtdd+g+kWi+edK+f+Lldlln+l+lf
  CCD22218.1  20 DNNNIDPN-VGKLSLTLKKDTESGYYLLRPLVSLLAATDNDISGNST--------IEEQEDKICNKYGILVDTDDAGKKWIMEDKMFHLLDLLNILPLF 109
                 56666666.899*********************************96........789***************************************** PP

      Swi6_N 102 kdefe 106
                 kdef+
  CCD22218.1 110 KDEFP 114
                 ****7 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.9
      Swi6_N  28 fllkallplLkqlaekekendieldkleeiseeqedkllskyGilVdtddegekWitedKafeLldllnl 97 
                 fl  +                                                        ++Ll+++n+
  CCD22218.1 222 FLSPSS-------------------------------------------------------LKLLQSFNI 236
                 333333.......................................................344444443 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   7.2e-07   0.00099      10      67 ..     277     354 ..     270     368 .. 0.64
   2 ?   -0.4   0.0       1.3   1.8e+03      21      36 ..     374     386 ..     354     432 .. 0.55
   3 !   22.1   0.2   1.2e-07   0.00017      24      81 ..     424     481 ..     392     483 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 7.2e-07
       Ank_2  10 lelvklLl...eg....adpn.k.....ngktaLhyAakngnleivklLleh......adndgrtpLhyAars.ghle 67 
                 + +++ Ll   +     + +n +      g+t+Lh+ +   n+ +vk L+e+       dn+g++pL  A++s +++e
  CCD22218.1 277 NTTFESLLhqvNLafpnTPLNlNipvdeHGNTPLHWLTTIANITLVKNLVENgadrliGDNSGESPLVKAVKSvNNYE 354
                 45777777443223222222241345579******7777767889******885555555***********9995543 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
       Ank_2  21 dpnkngktaLhyAakn 36 
                  +n   +t+Lh+ ++ 
  CCD22218.1 374 SIN---RTILHHIVIT 386
                 233...6677654442 PP

  == domain 3  score: 22.1 bits;  conditional E-value: 1.2e-07
       Ank_2  24 kngktaLhyAakngnleivklLleh....adndgrtpLhyAarsghleivklLlekgadinl 81 
                 +++ ta+ +       + +k+++++    +d++g t L +Aar g+  iv+ Lle+g+d+ +
  CCD22218.1 424 NDDDTAISLLQNL---D-LKWIINNmlnaQDSNGDTCLNIAARLGNVSIVDSLLEYGCDPYI 481
                 2566777665444...3.667776665557799*************************9865 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.6e-05     0.036       1      28 [.     305     331 ..     305     334 .. 0.95
   2 ?   -1.7   0.0       5.2   7.2e+03       2      12 ..     339     349 ..     338     365 .. 0.76
   3 ?   -1.5   0.0       4.5   6.2e+03       2      10 ..     376     385 ..     376     401 .. 0.70
   4 !   20.9   0.0   2.3e-07   0.00031       1      31 []     452     481 ..     452     481 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.6e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgad 28 
                 +G+tpLh+    +n+++vk L+e +gad
  CCD22218.1 305 HGNTPLHWLTTIANITLVKNLVE-NGAD 331
                 7**********************.8*99 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5.2
       Ank_3   2 GetpLhlAars 12 
                 Ge+pL  A++s
  CCD22218.1 339 GESPLVKAVKS 349
                 89999999987 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4.5
       Ank_3   2 GetpLh.lAa 10 
                 ++t+Lh +++
  CCD22218.1 376 NRTILHhIVI 385
                 5899**4444 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 2.3e-07
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvna 31 
                 nG t L +Aar gn++iv+ Lle +g+d+++
  CCD22218.1 452 NGDTCLNIAARLGNVSIVDSLLE-YGCDPYI 481
                 799********************.****986 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       2.8   3.8e+03      37      52 ..     121     136 ..     117     136 .. 0.68
   2 !   16.1   0.1   7.5e-06      0.01      13      53 ..     303     343 ..     295     346 .. 0.95
   3 !   23.2   0.1   4.5e-08   6.2e-05       9      54 ..     446     491 ..     443     492 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.8
       Ank_5  37 argadlnltdsrGlta 52 
                 ++g + n+ +++G++a
  CCD22218.1 121 NNGRNENANNEDGNSA 136
                 6777777777777665 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 7.5e-06
       Ank_5  13 dgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 d++gntpLh+     + ++v++L+++gad+ + d++G+++l
  CCD22218.1 303 DEHGNTPLHWLTTIANITLVKNLVENGADRLIGDNSGESPL 343
                 899************************************98 PP

  == domain 3  score: 23.2 bits;  conditional E-value: 4.5e-08
       Ank_5   9 vnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 +n++d +g t+L++Aa+ g+ ++v  Ll++g+d+ + +++Gl + d
  CCD22218.1 446 LNAQDSNGDTCLNIAARLGNVSIVDSLLEYGCDPYIGNKSGLRPAD 491
                 578888888********************************87766 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2     6e-05     0.083       1      31 [.     305     336 ..     305     337 .. 0.85
   2 !   13.4   0.1   5.8e-05     0.079       1      29 [.     452     481 ..     452     484 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +GnTPLH+  t+++   +k+L+ +GA+  + d
  CCD22218.1 305 HGNTPLHWLTTIANITLVKNLVeNGADRLIGD 336
                 6******868999999******99**966655 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 5.8e-05
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTC CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlna 29 
                 +G+T+L +Aa+ g+++i+  LL +G+++ +
  CCD22218.1 452 NGDTCLNIAARLGNVSIVDSLLeYGCDPYI 481
                 7*********************99*99976 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.28   3.9e+02      26      52 ..     297     323 ..     282     326 .. 0.74
   2 ?    4.1   0.0     0.055        76       2      44 ..     307     348 ..     306     355 .. 0.81
   3 !   12.9   0.3   9.3e-05      0.13      18      51 ..     439     469 ..     417     470 .. 0.80
   4 !   14.7   0.0   2.5e-05     0.035       2      48 ..     454     499 ..     453     503 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.28
       Ank_4  26 dinaqdnrsGetalhiAakrgnveilk 52 
                 ++n   ++ G+t+lh    + n+  +k
  CCD22218.1 297 NLNIPVDEHGNTPLHWLTTIANITLVK 323
                 456666777******988777777665 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.055
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaq.dnrsGetalhiAak 44 
                 +t+Lh++    ++ lv+ L+e+gad  +   ++sGe++l +A+k
  CCD22218.1 307 NTPLHWLTTIANITLVKNLVENGAD--RLiGDNSGESPLVKAVK 348
                 688888888889999999******9..4444677*****99996 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 9.3e-05
       Ank_4  18 rlLlekgad.inaqdnrsGetalhiAakrgnveil 51 
                 +++++   + +naq +++G+t+l iAa+ gnv+i+
  CCD22218.1 439 KWIIN---NmLNAQ-DSNGDTCLNIAARLGNVSIV 469
                 44443...158999.9****************997 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 2.5e-05
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnv 48 
                  t+L  aa  g++ +v++Lle+g d++   n+sG+ + +++a ++++
  CCD22218.1 454 DTCLNIAARLGNVSIVDSLLEYGCDPYIG-NKSGLRPADFGAGGSKL 499
                 578889999*******************8.********999977665 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   6.1   1.5e-06    0.0021       5      88 ..     523     606 ..     520     616 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.5e-06
  HIP1_clath_bdg   5 LrKnAevtkqlsvarqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssq 88 
                     Lr + ++t +  + r+++ + +   ++l+e l+ ++++ e++++  ke l +L+rel+ kr+el++ ++ L++++q +++ ss 
      CCD22218.1 523 LRDSEDLTSIGGSGRNEKPDTKSLINDLQELLNTVSRDYENEVKSSKERLINLHRELKVKREELSNSREKLNRTKQLKDEYSSL 606
                     788888899999999**************************************************************9998874 PP

>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.5   7.8e-05      0.11     163     264 ..     532     634 ..     488     640 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.8e-05
   Phage_GPO 163 lefeeeeeeeegeslferikallskkkksddarfadveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLsktdakekqrpea 261
                 +  + ++e+ +++sl++ +++ll++ +++ ++++++ +e + ++ +e+k  +e++++  ++ +++++lk+e ++lk++l ++++ + ++d++ kq +  
  CCD22218.1 532 IGGSGRNEKPDTKSLINDLQELLNTVSRDYENEVKSSKERLINLHRELKVKREELSNSREKLNRTKQLKDEYSSLKEQLYSIQNGIAEQDEDFKQESMK 630
                 4445556666689*******************************************999********************************99999888 PP

   Phage_GPO 262 tG.e 264
                  G +
  CCD22218.1 631 LGiS 634
                 8843 PP

>> MSV199  MSV199 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.2   4.7e-05     0.065      42     114 ..     560     632 ..     542     639 .. 0.90
   2 ?   -1.9   0.1       2.7   3.7e+03      33      62 ..     768     797 ..     736     798 .] 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.7e-05
      MSV199  42 gyeGeykkqkkkfkklLkrnnieykelkykdeeielypslkeeikllkknaiaqkkWlilevkdfKkailrln 114
                  ye e k+ k+++++l ++ +++ +el+++ e+++  ++lk+e  +lk++  + ++ +  + +dfK+  ++l 
  CCD22218.1 560 DYENEVKSSKERLINLHRELKVKREELSNSREKLNRTKQLKDEYSSLKEQLYSIQNGIAEQDEDFKQESMKLG 632
                 47999***************************************************************99985 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.7
      MSV199  33 itneiLeflgyeGeykkqkkkfkklLkrnn 62 
                 + + +L+ + ye  ++   ++++++Lk+++
  CCD22218.1 768 MLDGLLQAISYEDPHEINTNEMQDFLKKHS 797
                 455678888998888888889999998875 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.3   0.00055      0.76       5      56 ..     541     595 ..     537     620 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00055
      DUF883   5 aeleslladleellkeaadeageeaeelRerl...eerlerarerlrdaeeavae 56 
                  +++sl++dl+ell++ +++ ++e+++ +erl   + +l+  re+l++ +e++ +
  CCD22218.1 541 PDTKSLINDLQELLNTVSRDYENEVKSSKERLinlHRELKVKREELSNSREKLNR 595
                 6899**************************8533388888899999988887654 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  11.8    0.0097        13      35     128 ..     513     613 ..     497     640 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0097
       Atg14  35 ksekeslkkkiekalegke...eaeqledkiknkkakleelks.liadlrerlqelkdklsqlkkeieekkkklaklsdklk...kRrsdleslqnele 126
                 k+ kes+ +++ + +  ++   ++ +++ + k++ ++l+el +  ++d +++++  k++l +l +e++ k+++l+  ++kl    + + + +sl+++l 
  CCD22218.1 513 KENKESVLEQLRDSEDLTSiggSGRNEKPDTKSLINDLQELLNtVSRDYENEVKSSKERLINLHRELKVKREELSNSREKLNrtkQLKDEYSSLKEQLY 611
                 5556666666666666666777777788888899999988755056788999****************************9655544444444444444 PP

       Atg14 127 er 128
                 + 
  CCD22218.1 612 SI 613
                 33 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  10.6     0.018        24     141     239 ..     542     631 ..     512     791 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.018
  Exonuc_VII_L 141 dkaeleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlkekleekkerlkklke 237
                   d + l ++l+el + +++  ++ ++++k+rl +l+++lk ++e l+++r++l++ +++l+     ++++ +e+l +++    + ++e++e++k+ ++
    CCD22218.1 542 DTKSLINDLQELLNTVSRDYENEVKSSKERLINLHRELKVKREELSNSREKLNR-TKQLKD----EYSSLKEQLYSIQ----NGIAEQDEDFKQESM 629
                   455566667777777777777777777777777777776555555555555555.233333....2222222222222....222223333322222 PP

  Exonuc_VII_L 238 rl 239
                   +l
    CCD22218.1 630 KL 631
                   22 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.1    0.0064       8.8      18      89 ..     555     630 ..     542     642 .. 0.53
   2 ?    1.0   0.1      0.35   4.9e+02      20      75 ..     728     749 ..     661     779 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0064
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..-HHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  18 kaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.keekeqe...lqkkeqelqqkqqqkaqelqkkqqe 89 
                 +++  ++e++ k+ ++ l ++ +el+ ++eel ++ +kl+ +++ + e   l+++   +q+  +++ +++++++ +
  CCD22218.1 555 NTVSRDYENEVKSSKERLINLHRELKVKREELSNSREKLNrTKQLKDEyssLKEQLYSIQNGIAEQDEDFKQESMK 630
                 3444455555555555555555555555555543333331233333334446666666666555555777776655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHH CS
        OmpH  20 aqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqk 75 
                  +e l                                  +  +q++q+k  +l++k
  CCD22218.1 728 NDEYL----------------------------------KGIYQKIQQKHSDLENK 749
                 11111..................................12222233333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1546  (0.086229); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 5438.93
//
Query:       CCD22219.1  [L=565]
Description: hypothetical protein NDAI_0A00610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.9e-140  468.0  47.1   3.3e-140  467.9  47.1    1.0  1  AA_permease    Amino acid permease
    3.8e-28   98.5  53.9    6.2e-28   97.8  53.9    1.3  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
        1.4    9.1   7.8          5    7.3   0.7    3.9  3  YrhC           YrhC-like protein


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  467.9  47.1  5.6e-144  3.3e-140       1     476 [.      67     529 ..      67     532 .. 0.97

  Alignments for each domain:
  == domain 1  score: 467.9 bits;  conditional E-value: 5.6e-144
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+ +ialgg iGtglf+gl+  l +aGp+gal+ayl++g+ ++ v++slge+at++p++++f+++++rfl+p++G + G++y+fsw++++alel +++
   CCD22219.1  67 HIGMIALGGTIGTGLFIGLSTPLTNAGPVGALIAYLFMGTLVYSVTQSLGEMATFIPVTSSFTVFSQRFLSPSFGAANGYMYWFSWAITFALELSVVG 164
                  899*********************************************************************************************** PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeeg 196
                   +iqfw  ++++p + +++++f+v+l+++n++ v++yge+ef++a+ik++ai +f+i   ++++g++ +   gfr++ ++g +   ++ ++    +e 
   CCD22219.1 165 QIIQFW--TSAVP-IVAWISIFWVLLVAMNMFPVRFYGEFEFWVASIKVLAIMGFLIYCLCMVCGAGVTGPVGFRYWRNPGPMGPGIIAKN---LNEA 256
                  ******..*****.****************************************************988888**********555555555...5677 PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlaplin 293
                   f++++s ++ ++f+++G+elv+i+agE+++P+ks+P+ai++vv+ri++fY++sl++igllvp+nd++l++d   + aspf+i i++sg ++l++++n
   CCD22219.1 257 KFLGWVSSLINAAFTYQGTELVGITAGEAANPRKSVPRAIKKVVFRILFFYIGSLFFIGLLVPYNDPKLTSDDSYVaASPFIISIQNSGTPILPHIFN 354
                  7*********************************************************************9877666********************* PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfR 391
                  avil++++s+ans +y++sR+++ l+k++laP++l++ +k+gvP+++++++ ++++la++ +s   +   +fn+ll+i++++g++ wl+i++s++rf+
   CCD22219.1 355 AVILSTIISAANSNVYVGSRIMFGLSKSKLAPRILSRTNKNGVPWVSVIFTGLFGALAYMETSTGGE--AAFNWLLNITGVAGFFSWLFISISHVRFM 450
                  ***********************************************************77777777..***************************** PP

  AA_permease 392 kalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrpq 476
                  +al+y+g+s ++l+fka ++p +++++++++++i++i++++ + +      +++ ++f+aay++ +lf++i+++ +l++++++ +
   CCD22219.1 451 QALEYRGISRDDLPFKAKFMPGLAYYAIFFMTLIIIIQGFTSFCP------SFDGIDFLAAYISCFLFIAIWIVFQLWFRCRLIW 529
                  *********************************************......99***************************98766 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8  53.9     1e-31   6.2e-28       8     405 ..      70     495 ..      63     519 .. 0.79

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1e-31
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    ++++g +ig+g f+     ++++gp+ +l+  ++++ ++++v   + E+++ +p      v+++++ ++ ++  +++++wf++++++a+ lsv+++
     CCD22219.1  70 MIALGGTIGTGLFIGLstPLTNAGPVGALIAYLFMGTLVYSVTQSLGEMATFIPVTSSFTVFSQRFLSPSFGAANGYMYWFSWAITFALELSVVGQ 165
                    689999*****99988887778888877777777777778899999************************************************** PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdtffpngwpgv.. 190
                     ++++++       ++++  ++++ +l++++n + ++ ++ + ++++ +k+l ++ +li   l++v+g g + +     + + + + p++   +  
     CCD22219.1 166 IIQFWTS-A-----VPIVAWISIFWVLLVAMNMFPVRFYGEFEFWVASIKVLAIMGFLI-YCLCMVCGAGVTGPvgfryWRNPGPMGPGI---Iak 251
                    ***9764.3.....3344446777888999*********************98888888.555555665555554544422222233332...122 PP

  AA_permease_2 191 ..........llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsn....lgsvaalffeavggk 270
                              +++l  ++++++G e +   + e+ +  k vp+ai  ++  +l++y++  +++   vp +  + +s+      s++ +  +++g +
     CCD22219.1 252 nlneakflgwVSSLINAAFTYQGTELVGITAGEAANprKSVPRAIKKVVFRILFFYIGSLFFIGLLVPYNDPKLTSDdsyvAASPFIISIQNSGTP 347
                    2345555555779999*****************6666478**********************9999999888655553343344599999****99 PP

  AA_permease_2 271 vvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllli 366
                    ++ +i++++i   ++ a+n+ v+  sr+++ l++ +  Pr ++++nk+g p++++i+t ++  + ++ ++++ +aa+n+ll+++ ++ ++s+l+++
     CCD22219.1 348 ILPHIFNAVILSTIISAANSNVYVGSRIMFGLSKSKLAPRILSRTNKNGVPWVSVIFTGLFGALAYMETSTGGEAAFNWLLNITGVAGFFSWLFIS 443
                    **************************************************************99999999999*********************** PP

  AA_permease_2 367 igal..........ilrkkrphlkr..pgkilvaiig.alfllfllvalffp 405
                    i+ +          i r++ p + +  pg +  ai++ +l++++  ++ f p
     CCD22219.1 444 ISHVrfmqaleyrgISRDDLPFKAKfmPGLAYYAIFFmTLIIIIQGFTSFCP 495
                    *999777777777677777777666554444444444133333333554544 PP

>> YrhC  YrhC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.7   0.00084         5      19      59 ..      97     137 ..      97     144 .. 0.91
   2 ?    2.2   0.4     0.033     2e+02      14      33 ..     302     321 ..     300     339 .. 0.75
   3 ?    0.4   0.0      0.12   7.2e+02      38      62 ..     422     446 ..     415     454 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00084
        YrhC  19 alsaFLyiGlviPseaketlkksillgaivvfLllaflflr 59 
                 al+a+L++G+++ s  ++  +++++++++  f +++  fl+
  CCD22219.1  97 ALIAYLFMGTLVYSVTQSLGEMATFIPVTSSFTVFSQRFLS 137
                 89***************************999999988876 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.033
        YrhC  14 afvLLalsaFLyiGlviPse 33 
                  +  + +++ ++iGl++P +
  CCD22219.1 302 RILFFYIGSLFFIGLLVPYN 321
                 56667789999999999975 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.12
        YrhC  38 lkksillgaivvfLllaflflrrsk 62 
                 ++ ++ll +++v+  +++lf+++s+
  CCD22219.1 422 AAFNWLLNITGVAGFFSWLFISISH 446
                 56789999999999*******9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3849.11
//
Query:       CCD22220.1  [L=193]
Description: hypothetical protein NDAI_0A00620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-08   33.5   0.1    6.5e-08   32.8   0.1    1.4  1  Nitroreductase  Nitroreductase family


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.1   3.7e-12   6.5e-08       1     144 [.      11     150 ..      11     173 .. 0.83

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 3.7e-12
                     HHH--B---B-S----HHHHHHHHHHH....HTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGG...HHHHHHHHHHH CS
  Nitroreductase   1 irkRrSiRkFddepvpkeelekileaa....rraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrke...elklkaqkala 88 
                     i++Rr+i ++++e ++  ++e+i e+      + Psa+n+qp r +++ ++ + +k+++++ +++++  a+++ +  ++++   +          
      CCD22220.1  11 IENRRTIYNLKPELPEGITVEDIKETVqritKNGPSAFNSQPNRALIL-TGTTHKKVWDSVVNAMPTDNAKMRPKACRDEAygsV---------- 94 
                     789**********99999999999999555555***************.9*******************9998444433223332.......... PP

                     HSSEEEEE....---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-GGG CS
  Nitroreductase  89 gapvlivi....vatldkserkaaerayryalldagaaaqnllLaAtalGlgscpiggfd 144
                         ++++    + +l+    + ae   + a +++ga+    + a +alGlg+  +++  
      CCD22220.1  95 ----IFFVeekaTQKLQSDFAAFAEVFPACAQQSSGAVQIESWAAVEALGLGCNLQHYNP 150
                     ....33445666666666777789*****************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1464.59
//
Query:       CCD22221.1  [L=193]
Description: hypothetical protein NDAI_0A00630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-05   25.2   0.1    2.4e-05   24.4   0.1    1.5  1  Nitroreductase  Nitroreductase family


Domain annotation for each model (and alignments):
>> Nitroreductase  Nitroreductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   1.4e-09   2.4e-05       2     142 ..      12     148 ..      11     173 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.4e-09
                     HH--B---B-S----HHHHHHHHHHH....HTS--GGG---EEEEEE.-CCCHHHHHHHHHHHHHHHHTT-SS-GGGGGGHHHHHHHHHHHHSSE CS
  Nitroreductase   2 rkRrSiRkFddepvpkeelekileaa....rraPsagnlqpwrfvvvqdkelryklaeaalelllkaeaqaelaqryrkeelklkaqkalagapv 92 
                     ++Rr+i ++++e     ++e++ ++      + P+a+n+qp r +++ ++e+ + l++ +++++++  a+++  + ++   +  +   ++ +  v
      CCD22221.1  12 ENRRTIYNLKPELTAGVTIEDVQKTVqsivKNTPTAFNSQPNRAIIL-TGEAHKSLWNTVAAAMPSDGAKMRPTSCRD---EAYGSVIFFTDDKV 102
                     68999999999865555555555555444688***************.9**********************9777766...44444444444444 PP

                     EEEE---TTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEE-G CS
  Nitroreductase  93 livivatldkserkaaerayryalldagaaaqnllLaAtalGlgscpigg 142
                     +  +    ++   + a+   + a +++gaa    + a +alGlg   +++
      CCD22221.1 103 TEKL----QADFPAFADAFPQCAQHTTGAAQIMSWAAVEALGLGGHLQHY 148
                     4444....7777778899************9999**********988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1515.92
//
Query:       CCD22222.1  [L=641]
Description: hypothetical protein NDAI_0A00640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     3e-131  438.3  33.7   3.5e-131  438.1  33.7    1.0  1  AA_permease    Amino acid permease
    3.4e-33  115.1  32.6      4e-33  114.9  32.6    1.0  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
       0.17   11.8   1.3       0.48   10.4   1.3    1.7  1  Colicin_im     Colicin immunity protein


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.1  33.7  5.8e-135  3.5e-131       1     477 [.     131     597 ..     131     599 .. 0.98

  Alignments for each domain:
  == domain 1  score: 438.1 bits;  conditional E-value: 5.8e-135
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswitvlaleltaa 97 
                  hv++i+lg  iGtg++vg+g  l++ Gp+g++++y+++g +i+++++++ge+a++++  +ggf+ y s  ++p+lGf++++ y+++w+ v +lel++a
   CCD22222.1 131 HVIMISLGTGIGTGMLVGNGTSLANSGPAGLVIGYAIMGSCIYCIIQATGEMAVLYSkLIGGFNSYPSFLIEPALGFSVAWVYCIQWLCVCPLELVTA 228
                  9************************************************************************************************* PP

  AA_permease  98 siliqfwelvtdlpkawvtgavflvvlliinlvg.vkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfake 193
                  s++i++w  +t++   +v++++f+v++++in++g + +y+eaef+++++ki+++++f+i+giil++gg++ +g+ g+r+++d+g++  ++ ++     
   CCD22222.1 229 SMTIKYW--TTKVD-PDVFVVIFYVLIILINVLGgAAGYAEAEFFFNSCKILMLLGFFILGIILICGGAGDDGYiGGRYWHDPGAFRGEHAIDR---- 319
                  *******..99999.9***************9954899***********************************************999999999.... PP

  AA_permease 194 eegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa..aspfvifikesgvsvla 289
                      fk+++s +v ++faf   e+++++a+E ++P+k+iP a +++++ri+ +Y++s++++g+lvp+n+++ll +s  +  asp+v++ + +gv+v++
   CCD22222.1 320 ----FKGVVSTLVNAAFAFGLSEMIGVTASEQSNPRKAIPSAAKKMIYRIVCIYLGSVVIVGFLVPWNSDQLLGSSGGGvkASPYVLAVSTHGVRVVP 413
                  ....**********************************************************************8887799***************** PP

  AA_permease 290 plinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsy 387
                  ++inavil+++ls+ans+ ys+sR+l  la++g+aPk++k+v+++g+P +++ + +++ ++++ ++s + +  +vf +llais+l++l++w +i+ls+
   CCD22222.1 414 HFINAVILLSVLSVANSAFYSSSRLLLGLAEQGYAPKIFKYVDREGRPTMGMCVAALVNVISFCATSPKED--QVFVWLLAISGLSQLFTWSAICLSH 509
                  ***************************************************************88888888..************************* PP

  AA_permease 388 lrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrpql 477
                  +rfR+a+ +qgrs+ e+gfk++++++g++++++++++il++++++a+++   g++ ++++ f++ yl +++++++++g+k+++k +r ++
   CCD22222.1 510 IRFRRAMAVQGRSLGEIGFKSQCGVWGSWYAFIMMMLILIAQFWVAIAP--IGEGRLDVQAFFENYLAAPILIALYFGYKIYTKDWRLFI 597
                  *********************************************9999..556669*****************************9876 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9  32.6   6.7e-37     4e-33       3     407 ..     129     559 ..     127     583 .. 0.80

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 6.7e-37
  AA_permease_2   3 llsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssa.lprsgGiyvytkaafgkkvaflsawfnwfayvpvlasi 95 
                     + ++++++g+ ig+g +v n  ++a+ gpa ++++  +++ ++++ + +  E++ +  +  gG  +y + ++ + ++f +aw ++++++ v+++ 
     CCD22222.1 129 PRHVIMISLGTGIGTGMLVGNgtSLANSGPAGLVIGYAIMGSCIYCIIQATGEMAVLySKLIGGFNSYPSFLIEPALGFSVAWVYCIQWLCVCPLE 224
                    57899******************999*****9999988888888999999*****998*************************************9 PP

  AA_permease_2  96 lsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.......stetdt... 181
                    l+ a  ++ ++   +++++ +++++++++i+++ +l    g  ++a + ++   +kil++l ++i lg+i+++gg  ++        +        
     CCD22222.1 225 LVTASMTIKYW-TTKVDPD-VFVVIFYVLIILINVL---GGAAGYAEAEFFFNSCKILMLLGFFI-LGIILICGGAGDDGyiggrywH----Dpga 310
                    98888888885.5688886.3555545554444443...46777788888888999965555555.9*******99998888855533....4332 PP

  AA_permease_2 182 .ffpngwp...gvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgs.v....aalffea 266
                        +  +   gv+++l  ++++f+  e++ + ++e+ +  k +p a+  ++  ++++yl+  + + + vp+++ + l+++g+ v    + l + +
     CCD22222.1 311 fRGEHAIDrfkGVVSTLVNAAFAFGLSEMIGVTASEQSNprKAIPSAAKKMIYRIVCIYLGSVVIVGFLVPWNSDQLLGSSGGgVkaspYVLAVST 406
                    2333344443358***********************6665489*****999999999999999999999999776444443332232227777777 PP

  AA_permease_2 267 vggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisy 362
                     g +vv ++++++i ls+l  +n+a+++ssr+l  la++g+ P+ f+ v++ g+p+ ++++ a+v++i +++++   +  + +ll++s l+ ++ +
     CCD22222.1 407 HGVRVVPHFINAVILLSVLSVANSAFYSSSRLLLGLAEQGYAPKIFKYVDREGRPTMGMCVAALVNVISFCATSPKEDQVFVWLLAISGLSQLFTW 502
                    7889**************************************************************99998887655999999******9999999 PP

  AA_permease_2 363 llliigalilrkkrphlkr.............pgkilvaiigalfllfllvalffppk 407
                     ++ ++ +  r+ + +++r             +g +  a+i++ ++l++ ++ ++ p 
     CCD22222.1 503 SAICLSHIRFRRAMAVQGRslgeigfksqcgvWGSW-YAFIMMMLILIAQFWVAIAPI 559
                    999999999999999999999998888887766656.666666666666655554443 PP

>> Colicin_im  Colicin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.3     8e-05      0.48      68     114 ..     205     254 ..     193     258 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8e-05
  Colicin_im  68 llsallyavliYllllrnleLttagktfkLlakn...dvtllllYislYl 114
                 l ++++++  i  l++  leL ta+ t+k  +++   dv+++++Y+ + l
  CCD22222.1 205 LGFSVAWVYCIQWLCVCPLELVTASMTIKYWTTKvdpDVFVVIFYVLIIL 254
                 56778888888899****************99988788*******98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1018  (0.0567795); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 4727.40
//
Query:       CCD22223.1  [L=106]
Description: hypothetical protein NDAI_0A00650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-18   66.6   0.1    1.8e-18   66.1   0.1    1.2  1  Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
    4.4e-13   48.8   0.0    5.3e-13   48.5   0.0    1.1  1  ubiquitin  Ubiquitin family


Domain annotation for each model (and alignments):
>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.1     2e-22   1.8e-18       3      70 ..      28      95 ..      26      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 2e-22
                EEEEESSS-.-EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEE CS
   Rad60-SLD  3 iilkgkdgk.evkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidv 70
                i lk +dg  e+++k+k+tt+++ L+ea++k++g    ++ r+++DG + + ++t+edld+ed+d+i++
  CCD22223.1 28 INLKVSDGSsEIFFKIKRTTPLKRLMEAFAKRQGKEM-NSLRFLYDGIRVQADQTPEDLDMEDNDIIEA 95
                7799999999***************************.*****************************96 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   5.9e-17   5.3e-13       1      71 [.      28      99 ..      28     100 .. 0.93

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 5.9e-17
                EEEEE.TTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESS CS
   ubiquitin  1 itvkt.ldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrl 71
                i++k+ + +++i +++++++ ++ l+e+ a+++g +++++r++y+G + + ++t+e+++++d+++++ + ++
  CCD22223.1 28 INLKVsDGSSEIFFKIKRTTPLKRLMEAFAKRQGKEMNSLRFLYDGIRVQADQTPEDLDMEDNDIIEAHREQ 99
                78899455569999*****************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 845.01
//
Query:       CCD22224.1  [L=1022]
Description: hypothetical protein NDAI_0A00660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-71  240.4   0.0    2.6e-70  236.8   0.0    2.5  2  Pkinase      Protein kinase domain
    1.8e-36  125.7   0.0    5.1e-36  124.3   0.0    1.7  1  Pkinase_Tyr  Protein tyrosine kinase
    3.7e-33  113.7   0.3    3.7e-33  113.7   0.3    2.0  2  Fungal_KA1   Fungal kinase associated-1 domain
    1.4e-05   24.6   0.0    4.4e-05   22.9   0.0    1.9  1  Kinase-like  Kinase-like
  ------ inclusion threshold ------
        2.5    8.0   4.1       0.58   10.0   0.1    1.9  2  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.8   0.0   7.2e-74   2.6e-70       3     263 ..      20     287 ..      18     288 .. 0.93
   2 ?    0.1   0.1      0.12   4.2e+02     217     254 ..     510     549 ..     474     559 .. 0.64

  Alignments for each domain:
  == domain 1  score: 236.8 bits;  conditional E-value: 7.2e-74
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH...............HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke...............kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggela 86 
                   ++lG Gs+GkV  a++++t+++ A+K+i+k+  ++ +                  + rEi i+k l+hpn++ ly+v+e++++ly++ley+e+gel+
  CCD22224.1  20 LGKTLGLGSTGKVELAYNETTSQQAAIKIISKSIFSQGTVgessmvsnsspdalpYGIEREIIIMKLLRHPNVLSLYDVWETNSKLYMILEYAEKGELF 118
                 6789****************************977666556677888899998888899**************************************** PP

                 HHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHH CS
     Pkinase  87 dllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslG 184
                 +ll ++g l+e+ea ++++qi+ g++y+H+ gi+HrDlKpeN+L+d+k ++Ki+DFG+a+  ++++ l++ +g+++Y APE++++ +y + ++DvWs+G
  CCD22224.1 119 NLLVERGPLPEKEAIRFFRQIIIGISYCHALGIVHRDLKPENLLLDHKLNIKIADFGMAALETKDKMLETSCGSPHYAAPEIVSGVPYhGFQSDVWSCG 217
                 ***********************************************************************************999999********** PP

                 HHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 185 vilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpy 263
                 vil+ lltg+ pf +e+g      ++++   +lk+ +  + ++p ++eis+ea+dl+ ++l++dp++R+  +++l+hp 
  CCD22224.1 218 VILFALLTGRLPFDEEDG------NIRN--LLLKV-QSGEYEMPDDDEISKEAQDLIGRILTVDPEQRIKTRDILKHPL 287
                 **************4444......5566..33444.36689************************************97 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.12
                 HHHCT..SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT CS
     Pkinase 217 lkilg..etkeklpeaseiseeakdllkkllkkdpkkRlt 254
                 +k+ +  +++   +e +  s+++  l+++l++ ++ +R+ 
  CCD22224.1 510 AKLSEddNWEYIERETKRTSSDFATLIDELFEHEKYERIR 549
                 2232233333333444455*****************9985 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.0   1.4e-39   5.1e-36       2     257 ..      19     284 ..      18     285 .. 0.84

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 1.4e-39
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.ST.....TSSHHH..HHH....HHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEB CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl.ke.....eateee..kee....lleeakimkklkhpnivkllgvctkeepllivteyvkgGd 87 
                  +lgk+lG G+ GkV  ++ +++++++ +k++ K++ ++     +++ ++   ++    + +e+ imk l+hpn+++l+ v   +++l++++ey+++G+
   CCD22224.1  19 KLGKTLGLGSTGKVELAYNETTSQQAAIKIISKSIfSQgtvgeSSMVSNssPDAlpygIEREIIIMKLLRHPNVLSLYDVWETNSKLYMILEYAEKGE 116
                  6899**************9988888899999998742222222111111111222222678************************************* PP

                  HHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.H CS
  Pkinase_Tyr  88 LlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.s 184
                  L + L ++   +l  k+ ++f  q+  G++y ++  +vHrdl   N Ll+++  +ki+DfG+a   +kd+     e++  + ++ apE+++   +   
   CCD22224.1 117 LFNLLVER--GPLPEKEAIRFFRQIIIGISYCHALGIVHRDLKPENLLLDHKLNIKIADFGMAALETKDKML---ETSCGSPHYAAPEIVSGVPYHgF 209
                  ******98..9****************************************************988444433...33445669********9997637 PP

                  HHHHHHHHHHHHHHHTTSSGTTTTS..HHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 185 ksDvWsfGvllwEiftlgespypgl..kneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  +sDvWs Gv+l+ ++t g+ p+ +   + +++l k+ + +++++  +++++e ++l+ + ++ dpe+R + +++++
   CCD22224.1 210 QSDVWSCGVILFALLT-GRLPFDEEdgNIRNLLLKVqSGEYEMPDDDEISKEAQDLIGRILTVDPEQRIKTRDILK 284
                  ****************.****988754455677777366789***************************9998875 PP

>> Fungal_KA1  Fungal kinase associated-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.2   7.8e+03      91     110 ..     661     680 ..     659     684 .. 0.77
   2 !  113.7   0.3     1e-36   3.7e-33       2     117 ..     903    1022 .]     902    1022 .] 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.2
  Fungal_KA1  91 tkekGsassfrklvkeiekv 110
                 ++e+G++ss ++  k +e++
  CCD22224.1 661 VNESGNKSSAQQQRKILETI 680
                 67999999999988877766 PP

  == domain 2  score: 113.7 bits;  conditional E-value: 1e-36
  Fungal_KA1    2 kqnwFarlfsvksat.....kvlktslskkelrqelaklLreWkkyGlkdvksdkesntitgkvsseNilslksvkFeieiisvsehklSlvrftke 93  
                  ++ +F+r+fs +sat     +++++++ +++l+++l+klL++W++yGlkdv+sd++ ++itgk++++Nilsl+s+ Fe+ + ++++ k Sl+ ftk+
  CCD22224.1  903 RNVSFFRKFSNNSATikgydHEIYVNIGSRQLYTGLRKLLEGWTQYGLKDVRSDNTAMKITGKLANDNILSLRSTLFELLVEPKGS-KYSLIGFTKV 998 
                  6789*********************************************************************************7.********** PP

  Fungal_KA1   94 kGsassfrklvkeiekvlrkegvL 117 
                  +Gs++ +r+l++eiekvl+kegvL
  CCD22224.1  999 QGSSKVVRRLFTEIEKVLNKEGVL 1022
                  **********************98 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.2e-08   4.4e-05     157     257 ..     143     237 ..     129     276 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.2e-08
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggft..aLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltl 252
                  + + +a+g+vh +++++nllld+k  +++ +f+  aL ++ +    s     +a pE+++    y+        ++ d+W  G+  + +    lP+++
   CCD22224.1 143 ISYCHALGIVHRDLKPENLLLDHKLNIKIADFGmaALETKDKMLETSCGSPHYAAPEIVSG-VPYHG-------FQSDVWSCGVILFALLTGRLPFDE 232
                  567899************************9973256666666665666699*******98.34555.......99********************98 PP

  Kinase-like 253 ateea 257
                     ++
   CCD22224.1 233 EDGNI 237
                  76554 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00016      0.58     166     196 ..     149     177 ..     145     180 .. 0.76
   2 ?   -3.1   1.4       1.7   6.2e+03     120     158 ..     561     597 ..     542     606 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00016
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfeda 196
                  +++H+Dl+p Nll+d ++  +  + Df++a
  CCD22224.1 149 LGIVHRDLKPENLLLD-HKLNI-KIADFGMA 177
                 689*************.43333.46777766 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.7
                 CHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHHHHH CS
         APH 120 aqdlellrqlesatarllaselldlleeleeqvlaalaa 158
                 +++++++r +e+++ + l++e+l+l+++++e  + +l++
  CCD22224.1 561 ETRVREQRREEEER-AELQREQLKLQQKIDE-EISKLKE 597
                 34444445555553.4444444444778887.5655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2168  (0.120921); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.87u 0.32s 00:00:01.19 Elapsed: 00:00:00.46
# Mc/sec: 6725.34
//
Query:       CCD22225.1  [L=95]
Description: hypothetical protein NDAI_0A00670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-14   51.0   1.0    1.6e-13   50.3   1.0    1.4  1  Homeodomain  Homeodomain
    1.3e-05   25.0   0.1    2.1e-05   24.3   0.1    1.5  1  Homeobox_KN  Homeobox KN domain
  ------ inclusion threshold ------
      0.062   12.8   0.3       0.12   11.9   0.0    1.7  2  Homez        Homeodomain leucine-zipper encoding, Homez


Domain annotation for each model (and alignments):
>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   1.0   2.6e-17   1.6e-13       2      56 ..      39      93 ..      38      94 .. 0.98

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 2.6e-17
                 T-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Homeodomain  2 rkRttftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRakek 56
                 r+R  ++ke    Le+ F++++ ++++ere  Ak++g++  qV+vWF N+R++ k
   CCD22225.1 39 RSRSPISKENKLLLENIFQKKPWLNTKEREFVAKSCGMSALQVRVWFINKRMRTK 93
                 79***************************************************98 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   3.5e-09   2.1e-05      14      40 .]      65      91 ..      45      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.5e-09
  Homeobox_KN 14 edKeeLlkeTglsvkqitnWFINaRrR 40
                 +++e  +k +g+s+ q+  WFIN R R
   CCD22225.1 65 KEREFVAKSCGMSALQVRVWFINKRMR 91
                 5678899******************99 PP

>> Homez  Homeodomain leucine-zipper encoding, Homez
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.77   4.6e+03      16      24 ..      36      44 ..      35      48 .. 0.73
   2 ?   11.9   0.0     2e-05      0.12      33      51 ..      71      89 ..      52      95 .] 0.78

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.77
       Homez 16 kYysqhgll 24
                 Yy++  ++
  CCD22225.1 36 LYYRSRSPI 44
                589887665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2e-05
       Homez 33 ckksklsaqqVrdWFaske 51
                +k  ++sa qVr WF  k 
  CCD22225.1 71 AKSCGMSALQVRVWFINKR 89
                67889**********7764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 754.56
//
Query:       CCD22226.1  [L=151]
Description: hypothetical protein NDAI_0A00680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-06   26.1   0.2    5.2e-05   23.5   0.2    1.9  1  RNase_H2_suC  Ribonuclease H2 non-catalytic subunit (Ylr154p-
  ------ inclusion threshold ------
      0.036   14.7   0.4       0.07   13.8   0.4    1.5  1  DnaI_N        Primosomal protein DnaI N-terminus
      0.098   12.2   0.1       0.12   12.0   0.1    1.2  1  MTS           Methyltransferase small domain


Domain annotation for each model (and alignments):
>> RNase_H2_suC  Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.2   8.6e-09   5.2e-05       2     139 ..      25     144 ..      24     146 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 8.6e-09
                   EEEESSEESSEEE--.HHHHTCC........C-EE-SSS.EEEEETTEEEEEEEEE--TTEEEEEEECCTTS-EEESEEEEEEESS---S-SGGGTT CS
  RNase_H2_suC   2 lnlLPfsiktdgpan.tahyfqprksakpahkegadqqellraaFRGRqlvGqelsvppayrgiilsttnppnkggldsddeqeeeddeegegeeta 97 
                   ln++P++i+ + +++  ++ f+    + p +  +++q ++l++++RG +l+G+++s+  + ++ ils+ + ++         ++++ ++  ++++ +
    CCD22226.1  25 LNFVPIKIHMNDKTKeFSNNFIV--TNTPIQLGNNKQWNRLETFLRGAKLIGTDISLHDN-ETLILSQRE-IQ---------DNDSLSTTCDPKQIY 108
                   799******88888779999999..447888888888899***************99766.566666666.33.........566777776777766 PP

                   --EE.EEEEEEESEEEEECECS--.-TTSHHHHHTTHHHHHH CS
  RNase_H2_suC  98 vtksileptaefesftlWkhDeapeggDefvrgvgewlglve 139
                   v  s      +++++  ++++++ +   e ++++ e+++l++
    CCD22226.1 109 VVDS------TIDKMLNFEREGNEQRIEEELNKFYEYIQLNN 144
                   6555......89999999999999999999999999998876 PP

>> DnaI_N  Primosomal protein DnaI N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   1.2e-05      0.07      25      68 ..     105     147 ..      86     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
                 HHHHTTXHHHHHHHHHSTTTC-HHHHHHTHHHHHHHHHS-SS-T CS
      DnaI_N  25 keevlsdpeVqaFlqehqeelteeaierslskLyeyveekkkce 68 
                 k+  + d  + ++l+ ++e  +e+ ie++l+k+yey++ ++  +
  CCD22226.1 105 KQIYVVDSTIDKMLNFERE-GNEQRIEEELNKFYEYIQLNNLLH 147
                 5556778999999999996.99***************9887665 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     2e-05      0.12      82     126 ..      30      71 ..       5     102 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2e-05
                 EEEEE-STTTTSTTS-EEEEEE---STTTCHCHHHHHHHHHHHHH CS
         MTS  82 vevvasdvleeveekkfdlivsNPPfhagkatelavaeeliaeAk 126
                 ++++ +d   +++e + ++iv+N P++ g++++ +  e++++ Ak
  CCD22226.1  30 IKIHMND---KTKEFSNNFIVTNTPIQLGNNKQWNRLETFLRGAK 71 
                 4455554...55555699**********************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1202.75
//
Query:       CCD22227.1  [L=1402]
Description: hypothetical protein NDAI_0A00690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-42  145.8   4.9    1.5e-42  145.8   4.9    2.9  4  RasGEF    RasGEF domain
    4.6e-15   55.7   1.2    4.6e-15   55.7   1.2    4.8  6  RasGEF_N  RasGEF N-terminal motif
    8.2e-07   28.5   0.2    2.3e-06   27.1   0.2    1.8  1  SH3_1     SH3 domain
     0.0015   18.2   0.1      0.021   14.5   0.0    2.4  2  SH3_2     Variant SH3 domain
  ------ inclusion threshold ------
      0.012   15.5   0.1      0.024   14.5   0.1    1.5  1  SH3_9     Variant SH3 domain
        5.6    7.0   9.0         16    5.5   1.3    2.6  2  ORC_WH_C  Origin recognition complex winged helix C-terminal


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   1.2       3.4     1e+04     124     166 ..      87     125 ..      47     151 .. 0.63
   2 ?   -3.2   0.2       2.8   8.3e+03      43      73 ..     414     448 ..     385     482 .. 0.56
   3 ?   -4.0   0.0         5   1.5e+04      65      76 ..    1085    1096 ..    1054    1102 .. 0.71
   4 !  145.8   4.9   4.9e-46   1.5e-42       1     176 [.    1119    1317 ..    1119    1318 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.4
      RasGEF 124 spennfknyrealkssasskpciPflglyltdltfieegnpdt 166
                  ++n+  ny + + +++ +    P+ +   ++ t  e++n+++
  CCD22227.1  87 INNNKNTNYETNMVNKQ-N---HPYHNYTQKNTTTFENENNKK 125
                 44555566777776662.3...477777766665544333322 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.8
      RasGEF  43 fnrlsnwva...seilsees.lkkRakviekfiki 73 
                 + +++ +v+   +++l++++  k R k++  + ++
  CCD22227.1 414 LLQMTECVSrsnELVLKNTNlKKSRKKLLASWYNL 448
                 33344444433244444433245566666666554 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 5
      RasGEF   65 kviekfikiake 76  
                  ++i+k+i + ++
  CCD22227.1 1085 EMIKKWITLFNK 1096
                  588888887765 PP

  == domain 4  score: 145.8 bits;  conditional E-value: 4.9e-46
      RasGEF    1 elAeqltlieaelfskikpeellgsawsked....rspnveaviarfnrlsnwvaseilsee.slkkRakviekfikiakecrklnNfnslmailsa 92  
                  e+A+qltlie+ l+++++++el+++++  ++    rspnv+a+++++n+lsn+v++ +l+ +   + R++ ++++++ia     ++N+nsl++i++a
  CCD22227.1 1119 EVAKQLTLIESALYNNVEATELINKNFFIKNktlnRSPNVNAILSFTNQLSNYVVENVLQPNiANRIRINRLKNWLRIALSSLYFRNYNSLASIMTA 1215
                  79**********************9855444467566**********************876445667777**********9999************ PP

      RasGEF   93 LqsspvsrLkktweavskkslktleeleelmspennfknyrealkssa...........sskpciPflglyltdltfieegnpdtl......egk.i 171 
                  Lq+sp+ rL   w+++s+k++k++e l+++++p+nn+k yr+++++ +           s+ p++Pf++l+l+dltfi++gn d+        +k i
  CCD22227.1 1216 LQNSPITRLYYLWDELSEKDMKLYEYLSKIIHPNNNYKIYRQKIRTLKeqldttlefskSPLPVVPFFNLFLQDLTFINDGNADYRnpesfrPNKiI 1312
                  *********************************************999*************************************99999997778* PP

      RasGEF  172 NfeKr 176 
                  N++K+
  CCD22227.1 1313 NIDKF 1317
                  **997 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.5   5.0         6   1.8e+04      64      64 ..      86      86 ..      38     143 .. 0.52
   2 ?   -2.3   0.3       1.7   5.2e+03      63      72 ..     236     245 ..     178     289 .. 0.58
   3 ?   -2.9   0.1       2.8   8.3e+03      42      51 ..     475     490 ..     440     525 .. 0.58
   4 ?   -3.7   0.1       4.7   1.4e+04      52      75 ..     725     751 ..     704     765 .. 0.56
   5 !   55.7   1.2   1.5e-18   4.6e-15       2     104 ..     827     935 ..     826     938 .. 0.79
   6 ?    1.9   0.4     0.089   2.7e+02      34      87 ..    1006    1093 ..    1003    1112 .. 0.66

  Alignments for each domain:
  == domain 1  score: -6.5 bits;  conditional E-value: 6
    RasGEF_N 64 s 64
                +
  CCD22227.1 86 H 86
                1 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
    RasGEF_N  63 nswnsksssn 72 
                  +wns+s+ +
  CCD22227.1 236 RQWNSNSTLE 245
                 4444444433 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.8
    RasGEF_N  42 lekLierye......i 51 
                 ++  +++++       
  CCD22227.1 475 IDIAFQFFRiwrnskL 490
                 3333444443333331 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 4.7
    RasGEF_N  52 nppnnlesd.esnswnsksssn..irl 75 
                 ++ +n+ ++ e++++ns+++++  ir+
  CCD22227.1 725 QKLENSMKEmEIKDINSNTKNDklIRF 751
                 333333333234777777776645333 PP

  == domain 5  score: 55.7 bits;  conditional E-value: 1.5e-18
    RasGEF_N   2 vkagtlekLierLtsk.rlldddfletFLltyrsFttpaeLlekLierye.......inppnnlesdesnswnsksssnirlrvlsvlkewvenhyydf 92 
                 + +g++++Li ++t++ ++ dd +l++FLl++++F +++eL + Li+r++       ++++ n+++++++s + ++ ++ r  v++++++w++++++ +
  CCD22227.1 827 IIGGSFRALIYKMTDEqNKPDDFLLSAFLLNFKIFGSANELTNDLIARFDlndtltqFENQTNNNNGKYSS-RASKMKTRRRMVCNIFNSWMKSYWD-Y 923
                 789*************999999****************************888888855555555553334.33334446668*************8.6 PP

    RasGEF_N  93 sddkallsklek 104
                 ++d ++l  +++
  CCD22227.1 924 TEDFEILPTMIN 935
                 666666665555 PP

  == domain 6  score: 1.9 bits;  conditional E-value: 0.089
    RasGEF_N   34 sFttpaeLlekLieryeinppnnlesdes...............................nswnsksssn...........irlrvlsvlkewven 87  
                  s+t+ a L e++ie y+ ++ n+++++ s                               +                     + rv +++k+w++ 
  CCD22227.1 1006 SMTSLASLDENMIEDYNLTKVNTDNNEASnlelpllnlgtfsllsktdvknieivvqnyyK--------LtkmslddesiePKYRVNEMIKKWITL 1093
                  7899999999******966666666664456677777777766655555554444444431........044444444422444888888888875 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.2   7.7e-10   2.3e-06      14      47 ..     297     330 ..     288     331 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 7.7e-10
                 XEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEE CS
       SH3_1  14 LsfkkGDviivleksedgWwkgrlkgtgkeGliP 47 
                 Lsf+kGD+ +v++ +e+gW ++ l++++++G+iP
  CCD22227.1 297 LSFQKGDIAFVHNVDESGWGEVTLISNKQRGWIP 330
                 9********************************9 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     7e-06     0.021      10      53 ..     289     333 ..     276     335 .. 0.75
   2 ?    0.4   0.0      0.17   5.1e+02       9      28 ..     560     579 ..     557     596 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7e-06
                 SCGCCB..--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCG CS
       SH3_2  10 gedkse..LsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPssl 53 
                  ed +e  Lsf+kGd+  v    + d  gw e++   ++++G++P ++
  CCD22227.1 289 DEDDREicLSFQKGDIAFVH---NVDESGWGEVTLisNKQRGWIPFNY 333
                 45666688*******55554...555557767766888*******997 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.17
                 -SCGCCB--B-TTEEEEEE. CS
       SH3_2   9 vgedkseLsfkkGdvikvls 28 
                 +++ +++L++  +++i +l+
  CCD22227.1 560 NPSGCELLEIITHQIILLLR 579
                 7899*************995 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1     8e-06     0.024      13      47 ..     297     333 ..     288     335 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8e-06
       SH3_9  13 LsLqrGDvitvieesedgWlegsl..tGrtGlvPany 47 
                 Ls+q+GD+ +v + +e+gW e++l  + ++G+ P ny
  CCD22227.1 297 LSFQKGDIAFVHNVDESGWGEVTLisNKQRGWIPFNY 333
                 9***********999********77899*******99 PP

>> ORC_WH_C  Origin recognition complex winged helix C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.2    0.0082        25      56      82 ..      39     101 ..      37     133 .. 0.66
   2 ?    5.5   1.3    0.0054        16      58     120 ..     187     283 ..     156     285 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0082
    ORC_WH_C  56 eaFkqvlekereedkeseaeeeekak....................................e 82 
                 e+F++ l+++++ ++++e+ee+++++                                    +
  CCD22227.1  39 ETFQDILKQQKKDQQKKEQEEKKDKHkteiqaglgltlpipsskenlhinnnkntnyetnmvN 101
                 689999999999877777777766668888888888888888777777766666655555542 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0054
    ORC_WH_C  58 Fkqvlekereedkeseaeeeekak..................................eeeaekkkkkkekeedeedeeewekelqarFiralheLe 120
                 F  ++++ + +d+e+++eeee+++                                  e ++++++k+ + ++d+++ +++  + + +Fi a++ ++
  CCD22227.1 187 FETTINTLETNDEENSQEEEENENeediylknenstlttlegtsnsysnrqwnsnstlEPNKQQSDKTVTHDNDDSNINKEMANFAYLFITAISSFD 283
                 555555555555555555554444566**************************99888777777777777778888788888888899999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1895  (0.105695); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.88u 0.27s 00:00:01.14 Elapsed: 00:00:00.43
# Mc/sec: 9749.90
//
Query:       CCD22228.1  [L=908]
Description: hypothetical protein NDAI_0A00700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-47  163.2  29.8    2.5e-47  162.7  29.8    1.3  1  SPX            SPX domain
    3.9e-22   78.8  39.7    7.8e-22   77.8  38.5    1.8  1  CitMHS         Citrate transporter
    9.9e-20   71.0  30.2    1.3e-19   70.6  30.2    1.1  1  Na_sulph_symp  Sodium:sulfate symporter transmembrane region


Domain annotation for each model (and alignments):
>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.7  29.8   4.1e-51   2.5e-47       1     382 [.       1     353 [.       1     355 [. 0.69

  Alignments for each domain:
  == domain 1  score: 162.7 bits;  conditional E-value: 4.1e-51
         SPX   1 MKFakeLeenlvpEWrdaYldYkqLKKlIkkvqr.eleslgleaetlrellnrpedskkksse..rtepstsaaadesgnsaadasssepkdeaeslpr 96 
                 M+F++ L++n+vpEW+++Y+dY +LK+lI+ +q+ el+++  ++ +l + +   +++++++++  ++e  ++++     +s++d  +++      +++ 
  CCD22228.1   1 MRFSHFLKYNAVPEWQNHYMDYIALKNLIYTLQTdELKENDARPTSLTKEECNDKNDDIHETThfSSEDLENNTG----SSSTDLFNRNF-----ARKF 90 
                 9*********************************99996666666666666555555555444342222222222....22222222222.....3344 PP

         SPX  97 rspl...srssrssssygglvssppsansssssddssesnpadssssssssesesssssspsllrrlfs.esesreeksersyetrplraekeFferLd 191
                 +++    +++s++s+s+++ v +p+++++ +  d s +++   ++++ +s++s++ +++ ++   rlfs +++s ++++++ y      + + F++ L+
  CCD22228.1  91 KNTFfkkKTKSKHSTSFNEHVEDPENEQTFELGDLSTKNE---NKDKVKSGSSNKLKDTLRKPKGRLFSsRASSISSDGKTLYG-----SYDSFVSSLT 181
                 4433334557888889999999988888877777777666...66666666666666666666777777788888888888888.....7********* PP

         SPX 192 seLnkvetFykakeeefterlesLrkqlealrprrikeaeerksdlyrwreifglksveaqvfessreldrgelseeardkevseelekngwikptksk 290
                 +e  kv++Fyk+ e +f+erl++L ++le+     +++++er          f +++++++     + ld ++     +++  s el +++ + + +s+
  CCD22228.1 182 DEKIKVDDFYKRTEAKFYERLDNLIHDLEKE---GVTHINER---------FFPSEELSSEEQNQIKPLDITN-----TTNIESFELRSQRPSTELRSR 263
                 ******************************8...34444444.........2222233333333333333332.....122222333333333333333 PP

         SPX 291 lekkrneralekvkpektlkafldsvrrdylrkenrvklkkakk.klkkafvelYrgLelLKsYqeLNrtAFrKIlKKfDKvtaltaskrymk 382
                 ++   +e+  e+  +++++++f  ++ ++ l++++++++k++kk  lk+ +++l+++L++LKs++eLN+++F+KI+KK DKv++l+++ ++++
  CCD22228.1 264 YDY--SEDGDEDD-EDEEVDDFEATHDNTALLNYSQFNIKSQKKsLLKQSIINLFVDLSQLKSFIELNKMGFSKITKKADKVLHLNTRAELIE 353
                 332..44444443.58899999888777777777**********9*****************************************9998876 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8  38.5   1.3e-25   7.8e-22       2     284 ..     517     863 ..     516     880 .. 0.75

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 1.3e-25
                 xxxxxxxxxxxxxxxxxxxxx................xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
      CitMHS   2 vllileklrldvvallvlvll................vltiee....alsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvllv 79 
                  l++ e+++l v+allv +l                 v    +    +ls++ s++i++ll+++++gaal+e  +++ la +ll +ag+k++ +l++ +
  CCD22228.1 517 FLWASEAIPLHVTALLVPLLSvlfrvfknsdgttmgaV----DtsttVLSAMWSSTIMILLAGFTLGAALSEYEIAEVLASWLLAFAGTKPRnILLMAM 611
                 589999*********99999999998888886654433....15556999999********************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................... RF
      CitMHS  80 lltallsafvsndgvvlimipivlslakrlkklppl...lliplalaaniggaltpiGtpttraaarpglslpnlll...................... 153
                  ++++ls+++sn++  +++ +++ +l +    ++p    l++ +al+a +gg+++pi  p            +n++                       
  CCD22228.1 612 SVVFFLSMWISNVASPVLTYSLLTPLLETSDATSPFaraLIMGVALSADLGGLASPISSP------------QNIISmeylkpygigwgqffavalptg 698
                 ****************************988888889*9*********************............676666666666666666654443322 PP

                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxx...................................... RF
      CitMHS 154 ..lalllvgllplvllfmfgvalalpvnapkvkkqkaiieaiarsllpv.....atillla...................................... 207
                     ll++gl+++ + +            +k+k  k +  + +  +++            +                                      
  CCD22228.1 699 vlAMLLAWGLVCVTFKM------------HKTKVEKFTPIRTKFTIKQYyvifvT-----Lgtiilwcveaqiegafgssgqiavlpmvlffgtglltt 780
                 21444444443333333............12222222222222222222222220.....223333355666666666666666666777788889999 PP

                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...x.xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 208 ..ykkveWsvlllfaGvfllvgaleqtGilealadllga...g.gplvalalvlglial.lsafisnvavaalmapialgmapa 284
                   +++ +Ws+++l+ G + l+++++ +G+l +++ +l+    + g++ a+++++g+++l +  f+s +  a++++pi+ ++  +
  CCD22228.1 781 adLNAFPWSIVILAMGGIALGKGVSSSGLLVTVGRALQRkieSdGIM-AILCIFGILMLvVGTFVSHTVSAIIIIPIVQEVGDN 863
                 9*********************************9994469845885.55666666666699****************987664 PP

>> Na_sulph_symp  Sodium:sulfate symporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6  30.2   2.2e-23   1.3e-19      26     440 ..     501     905 ..     478     908 .] 0.85

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 2.2e-23
  Na_sulph_symp  26 leskawrllaifiaaivglileplplavialialsllavligvla........akalsevlsgfssdttlLvfaalliaaavektgLgkRiAlvlv 113
                     ++ + r++a +  ++  +  e++pl v+al+   l+++   +++          + ++vls   s+t+++++a+++++aa+    + + +A  l+
     CCD22228.1 501 NDPVEGRCMALVECVAFLWASEAIPLHVTALLVPLLSVLFRVFKNsdgttmgaVDTSTTVLSAMWSSTIMILLAGFTLGAALSEYEIAEVLASWLL 596
                    5667789999999*****************9987776555555557799999656667899999999***************************** PP

  Na_sulph_symp 114 kivGkrtliLgy..alvladlllapatpsntAraggivfpvikslssafgsepekqserkigaylmltvvqsasitsiaflTamApNllllglins 207
                     + G++++ +    + v+ +l++++++ +    + + +      l ++  s+  +      ++ l++ v+ sa +++ a   +  +N++ ++ ++ 
     CCD22228.1 597 AFAGTKPRNILLmaMSVVFFLSMWISNVASPVLTYSLL----TPLLET--SDATSP----FARALIMGVALSADLGGLASPISSPQNIISMEYLK- 681
                    *******6655501556778888888776655554444....444433..333343....6789**************************99998. PP

  Na_sulph_symp 208 ilgveitwasWflaaiptgvillllvplllyvlyppeikkkeeakavaktelkelGpltarekallilfvlllllWifgesln...idattvaivv 300
                         i w++ f +a+ptgv+ +ll++ l+ v ++   +k+ e  + ++t+      +t+++  ++ + ++ ++lW  + +++    + + +a++ 
     CCD22228.1 682 --PYGIGWGQFFAVALPTGVLAMLLAWGLVCVTFKMHKTKV-EKFTPIRTK------FTIKQYYVIFVTLGTIILWCVEAQIEgafGSSGQIAVLP 768
                    ..6789*********************999999*9999999.666777776......689********************999997899******* PP

  Na_sulph_symp 301 lvillllrvldWkDivkqktaWntllllgglialakllersgliewlgnklttslsglspavaiiiilslfvlvhylfaSatAttaallpillava 396
                    +v+ + + +l+  D   +  +W +++l  g+ial k+ + sgl+  +g +l+ + +   + +ai+ i+ +++lv   f S t    +++pi+  v+
     CCD22228.1 769 MVLFFGTGLLTTADL--NAFPWSIVILAMGGIALGKGVSSSGLLVTVGRALQRKIE-SDGIMAILCIFGILMLVVGTFVSHTVSAIIIIPIVQEVG 861
                    ***********9975..789*********************************999.89************************************* PP

  Na_sulph_symp 397 qaipg.appllvalllalatslagfllpyatgpnpivfgagylkv 440
                      ++      ++++ +al  s + + lp ++ pn i+ ++ + kv
     CCD22228.1 862 DNLSDpKGAPILVFGCALLASAG-ICLPSSGFPNQIAISMLDKKV 905
                    *9976555678888999999987.99**********999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1208  (0.0673769); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6054.70
//
Query:       CCD22229.1  [L=335]
Description: hypothetical protein NDAI_0A00710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-45  155.9   1.6    4.6e-45  154.2   1.6    1.7  1  PfkB          pfkB family carbohydrate kinase
  ------ inclusion threshold ------
      0.051   12.9   1.5        1.5    8.1   0.2    2.7  2  Phos_pyr_kin  Phosphomethylpyrimidine kinase


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   1.6   5.1e-49   4.6e-45       4     301 ..       3     327 ..       2     328 .. 0.88

  Alignments for each domain:
  == domain 1  score: 154.2 bits;  conditional E-value: 5.1e-49
                 EEEEEEEEEEEEEECSSH..TTSEEEESEEEEEEESHHHHHHHHHHHTT.....-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEE CS
        PfkB   4 vvviGealidliavsekl..egelvevktveksaGGagaNvAvalarlg.....advafigavGdDnfGeflleelkkegvdtdyvkidedtrtglali 95 
                 + ++G++++dl+ ++++    ge+ +++++e +aGG+g+N++ a ar+       +v ++g vG+D fGe+ll+ l+k++vd++ v i ++  tg+a+i
  CCD22229.1   3 ITIVGSLNYDLVTYTDRVpdSGETFRANHFETHAGGKGLNQTIATARMKdpkanYKVKMVGNVGKDSFGEQLLDILRKNNVDVANVGILPNVMTGIATI 101
                 5689**************9999999****************************999*****************************************99 PP

                 EETTT...SEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEES..EECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHHHHHHHHHHHCTESEEEE CS
        PfkB  96 vvded...gertivfnrgaaadltkeeleededlleeadllyisg..llsselpeavleelaeaaknggtfdpnlldplgaqfkeallellaladllkp 189
                 +v+++   g++ i++ +ga+ + t e    +++++   d        ++++e+p+ +   +++  +++     ++ +p++  f +   e + l+d+l++
  CCD22229.1 102 LVEQKdgsGQNRIIITQGANGKSTYES--GKLENIFPTDSSDRKQmvIFQQEIPNPT--SIIHWLNKNRPTYEIVFNPSP--FEPISAEDWHLVDVLIV 194
                 998766789************999964..4666666677776666889******997..566666666666778899999..8899999999******* PP

                 EHHHHHHHHTSCT....................HSHHHHHHHHHHHHHTTS.SEEEEEEGGGEEEEEE..TTEEEEEEE.SSSS-SBGTTHHHHHHHHH CS
        PfkB 190 neeElealtgekl....................edieealaalhklkakga.ktvvvtlGkeGalvve..kdgelkvpavpkvkvvDttGAGDsfvggf 265
                 ne E+ ++++                       e i ++l++     ++ + + vv tlG++Gal+++  + ++ +vp+++   +vDttGAGD+f g++
  CCD22229.1 195 NEVEAVQILETIYnneeiknyksaiekdfvegyEKICSVLQKTLV-SQS-KsAIVVTTLGSKGALFCSkdHPTVGFVPSCKVDSIVDTTGAGDTFLGSL 291
                 *****9999876677789*********999655555555555433.333.359***************88889************************** PP

                 HHHHHTTHHHHHHHHHHHHHHHHHHTSSSSSTCSCC CS
        PfkB 266 laallegksleealrfanavAalvvqkkgaiaslpt 301
                 + +l +g++le+a +f + +++l++qk+ga++s+pt
  CCD22229.1 292 VTQLYQGQDLEKAMKFSTVASSLSIQKRGAAESMPT 327
                 *********************************997 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1    0.0072        65      34      76 ..      56      96 ..      39     114 .. 0.84
   2 ?    8.1   0.2   0.00017       1.5     119     224 ..     188     308 ..     173     322 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.0072
                  TTCEEEEEE--HHHHHHHHHHHHHTS--SEEEE-S--SHHHHH CS
  Phos_pyr_kin 34 tkgvkevhplpaelveaqleavledvkvdavKiGmlasaeiie 76
                  + +vk v ++ ++ + +ql  +l+  +vd++ +G+l +   ++
    CCD22229.1 56 NYKVKMVGNVGKDSFGEQLLDILRKNNVDVANVGILPNV--MT 96
                  5789999*****************************664..33 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00017
                   G-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHHT......T-SEEEEEEGGS-SSSEEEEEEEE.........TSSEEEEEEEE----.S--BTH CS
  Phos_pyr_kin 119 latvitPNlpEaeaLlgekikteedmkeaakkllkl......gakaVlikGghlegeeavvtdvly.........dgeeveeleaeriet.knthGt 199
                   l++v++ N  Ea ++l+ +i ++e++k+  +++ k       +  +Vl k    ++++a v+ +l          d+ +v  +++ ++++  +t G+
    CCD22229.1 188 LVDVLIVNEVEAVQILE-TIYNNEEIKNYKSAIEKDfvegyeKICSVLQKTLVSQSKSAIVVTTLGskgalfcskDHPTVGFVPSCKVDSiVDTTGA 283
                   56777777777777776.5555555555555554422333334556666666655544444443331000001211122222233333322689*** PP

                   HHHHHHHHHHHHHCTSSHHHHHHHH CS
  Phos_pyr_kin 200 GCtlssaiaaelakgesleeAvkkA 224
                   G+t+  ++ ++l +g++le+A+k +
    CCD22229.1 284 GDTFLGSLVTQLYQGQDLEKAMKFS 308
                   *********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2509.94
//
Query:       CCD22230.1  [L=398]
Description: hypothetical protein NDAI_0A00720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-24   85.4   0.7    1.9e-22   80.2   0.2    2.8  2  RNase_PH  3' exoribonuclease family, domain 1


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.2   1.1e-26   1.9e-22       1     132 []      46     248 ..      46     248 .. 0.91
   2 ?   -0.5   0.0     0.088   1.6e+03      62     109 ..     313     356 ..     292     371 .. 0.68

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 1.1e-26
                 EEEEEEEEESSSSTTS..............EEEEEEECCEEEEEEEEEEEEEE-TCCG--CC..........EEEECCCCEC...CCCEC-C...S... CS
    RNase_PH   1 elRslsietgvlsqan..............GSaylelGdtkvlasvtgpieerpseerddae..........galdveveya...pfasgerrregrps 72 
                 e+R+++i+ + ls+ n              GS++l++G+t v++s+tg+i e+ s++ d+++          ++ d   +y+   p++++er r g  +
  CCD22230.1  46 EFRDIEINEDSLSRFNashmmnedsqnnilGSNVLKCGKTFVITSITGGIIEDTSTSLDEVDigekelldivEQEDSLNKYTsvyPVVEVERGRVGACT 144
                 89************************************************99555444555566666666664555555555677*******88899** PP

                 HHHHHHHHHHHHHHCCTC-CCGCCTCEEEEEEEEEECCC.............................................S-CHHHCHHHHHHHH CS
    RNase_PH  73 deeielsrlleralrpsillekkpkstididitvlssdg.............................................gslldalinaaslAL 126
                 dee+++s++l ++l++s +++k + ++++ +i++++++g                                             g+++d+++n++++AL
  CCD22230.1 145 DEEMTVSQKLFDSLLHSRIIPKDS-LKVQTGIRTTDENGvsqiiypdevnnvdgndvddsykhvmprkkwsyvlyakivvysrtGPVFDMCWNSLMYAL 242
                 *********************997.************************************************************************** PP

                 HCTCEE CS
    RNase_PH 127 adagip 132
                 +++++p
  CCD22230.1 243 QSTRLP 248
                 ****98 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.088
                 EC-C...S...HHHHHHHHHHHHHHCCTC-CCGCCTCEEEEEEEEEEC CS
    RNase_PH  62 sgerrregrpsdeeielsrlleralrpsillekkpkstididitvlss 109
                 +++r++e +++d e++   +++++l++ i +e +  s i+ +i ++++
  CCD22230.1 313 EEARKQEDKQEDVEMD---KIDSILLADIDTEAEE-SSIYSTISLINN 356
                 4445555555555554...8899999888888775.888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3233.34
//
Query:       CCD22231.1  [L=346]
Description: hypothetical protein NDAI_0A00730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-59  200.1  21.9    5.2e-59  199.8  21.9    1.1  1  ELO       GNS1/SUR4 family


Domain annotation for each model (and alignments):
>> ELO  GNS1/SUR4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.8  21.9   2.9e-63   5.2e-59       7     248 ..      69     305 ..      64     307 .. 0.92

  Alignments for each domain:
  == domain 1  score: 199.8 bits;  conditional E-value: 2.9e-63
         ELO   7 kvpiliallYlllvllgpklmknrkpfklkalvilhnlflavlSavgfvgmvkallevlkkkglvdllckddssdegrlrngllaflvllfylsKfvEl 105
                   +++ +++Y+++v+ g+ ++kn ++f+l+ l++lhnlfl+  S++++v mv++++ ++ ++gl+ ++c     d g++++  ++++++ f + Kf+E+
  CCD22231.1  69 PSVLYTIAAYYIIVFGGRAILKNFPKFQLNGLFQLHNLFLSSSSLILLVLMVEQIVPIIAEHGLYYAIC-----DIGAWTQPMVTLYYFNF-IFKFLEF 161
                 56789999***************************************************99********.....99***************.******* PP

         ELO 106 lDTvflvlrkkqvsfLhvYHHatvmllmwaglrfatssgivfivllNsfvHaimYtYYflsalgakklvvpwkrliTslQilQfvvgllaavyllvsyt 204
                 +DT+flvl++k+++fLh++HH +++ll++++l  +t+ + ++ ++lN++vH++mY+YYfl+a g++   v+wk+++T++Qi+Qf++ + ++++ +++++
  CCD22231.1 162 IDTFFLVLKHKRLTFLHTFHHGMTALLCYTQLVGTTA-MSWVPITLNLAVHVLMYWYYFLAARGIR---VWWKEWVTRFQIIQFILDIGFIYFGVYQKF 256
                 **********************************955.555555*****************66665...8******************99999999977 PP

         ELO 205 lkk........vgCdtsqtpkaairlnllyllslllLFlnffiksylkkkkk 248
                 ++         ++C  s   +aa++ ++ ++ s+l+LF+ f+i+ y +k +k
  CCD22231.1 257 AHLyaptlphcGDCVGS---TAATFSGCGLISSYLVLFIAFYIDVYKRKGTK 305
                 7779999*777777555...78*************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2546.84
//
Query:       CCD22232.1  [L=1475]
Description: hypothetical protein NDAI_0A00740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-17   61.5   0.0    4.5e-07   29.9   0.0    2.8  2  Myb_DNA-binding  Myb-like DNA-binding domain
    9.8e-06   25.7   3.4      0.044   14.0   0.5    3.9  3  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.094   12.5   0.3       0.25   11.1   0.3    1.7  1  UPF0167          Uncharacterised protein family (UPF0167)
       0.63   10.3   6.1         18    5.6   0.1    2.6  2  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
        1.9    8.5  15.7      0.036   14.0   1.7    4.1  3  Myb_DNA-bind_7   Myb DNA-binding like


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.3e-10   4.5e-07       3      44 ..     819     861 ..     818     863 .. 0.94
   2 !   28.5   0.0   3.5e-10   1.2e-06       3      44 ..    1083    1124 ..    1081    1125 .. 0.96

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.3e-10
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHT.SS-HHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlg.gRtekqcrsrwrn 44 
                       +t++E+el+++a  ++ +++ kI++++g  R++++c +++++
       CCD22232.1 819 TFTKDEHELFADAYVMYPKKFGKISHYMGsLRSPEECVLHYYR 861
                      59***************************66**********97 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 3.5e-10
                       SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding    3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44  
                        W+  E   + e+++++G++W+ I+++lg+++  ++r+++++
       CCD22232.1 1083 YWSVKEAYAFPELLQEYGSQWSVISQKLGSKSTTMVRNYYQR 1124
                       6***************************************96 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.25   8.8e+02       9      20 ..     682     693 ..     675     709 .. 0.89
   2 !    8.7   0.0   0.00058       2.1       1      47 [.     820     866 ..     820     886 .. 0.87
   3 !   14.0   0.5   1.2e-05     0.044       1      41 [.    1084    1124 ..    1084    1152 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.25
  Myb_DNA-bind_6   9 LlklvekygndW 20 
                     L kl+++y++dW
      CCD22232.1 682 LKKLYFRYEKDW 693
                     789********* PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00058
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealn.rRtpkqcfdrwknkLrpki 47 
                     +t++E e+ ++ + +y +++ +I+  ++  R+p++c  ++ +  +  i
      CCD22232.1 820 FTKDEHELFADAYVMYPKKFGKISHYMGsLRSPEECVLHYYR-TKKTI 866
                     799************************77***********99.65554 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 1.2e-05
  Myb_DNA-bind_6    1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwkn 41  
                      W++ E ++  +l ++yg++W+ I++ l+ ++ + +++++++
      CCD22232.1 1084 WSVKEAYAFPELLQEYGSQWSVISQKLGSKSTTMVRNYYQR 1124
                      9999***********************99**********98 PP

>> UPF0167  Uncharacterised protein family (UPF0167)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3     7e-05      0.25      96     139 ..     690     733 ..     683     752 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7e-05
     UPF0167  96 qeqWlahCddacaflgevgaeelealkiklekeelaaikddles 139
                 +++W +hC+ + +  +e  +ee+e+ ++ +e++el++ +++ ++
  CCD22232.1 690 EKDWDVHCNKMERLSNELRKEEIESKRKLKEEQELKEKQEKEQT 733
                 679********************866655555555544444332 PP

>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   3.0    0.0091        33       3      59 ..     648     704 ..     646     726 .. 0.83
   2 ?    5.6   0.1    0.0049        18      26      56 ..    1081    1111 ..    1064    1125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0091
  SANT_DAMP1_like   3 FakfnkkvevpeytdeeYeellkeedWtkeetdyLfdlckeydlrfvviaDryelek 59 
                      F + n+++++ +  +e Y++ll  ++ + + +  L +l+ +y+  + v  ++ e  +
       CCD22232.1 648 FFEKNIQFHHSNIRKELYKKLLDLKNFEDTRITNLKKLYFRYEKDWDVHCNKMERLS 704
                      66679999999***********************************99877776644 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0049
  SANT_DAMP1_like   26 eedWtkeetdyLfdlckeydlrfvviaDrye 56  
                       ++ W+ +e     +l++ey  ++ vi  +  
       CCD22232.1 1081 SSYWSVKEAYAFPELLQEYGSQWSVISQKLG 1111
                       355***********************98765 PP

>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.2      0.22   8.1e+02      43      70 ..     563     590 ..     552     604 .. 0.80
   2 ?    0.1   2.0      0.22   7.7e+02      40      64 ..     719     744 ..     703     763 .. 0.76
   3 ?   14.0   1.7     1e-05     0.036       6      83 ..    1079    1157 ..    1071    1162 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.22
  Myb_DNA-bind_7  43 rqlKlKFkkEerknpeliekalkkrkel 70 
                     +++K+ F+ E  ++pel++  l+k +++
      CCD22232.1 563 KNVKQEFDYEHVHDPELLKIDLSKLQKY 590
                     6799999999999999998888776664 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.22
  Myb_DNA-bind_7  40 rtrrqlKlKFkkEerknpelieka.l 64 
                     ++ ++lK+K +kE+ + +++i  a +
      CCD22232.1 719 KEEQELKEKQEKEQTNSQNNIVTAgI 744
                     678999******99999999988842 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 1e-05
  Myb_DNA-bind_7    6 kktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkkEerk.npeliekalkkrkeldleefkeeaekek 83  
                      +k++ Ws +e   F + L+++G  +s+i++ + +++ + +++ +++   +  ++ i +   +++++  ++f ++a+++ 
      CCD22232.1 1079 HKSSYWSVKEAYAFPELLQEYGSQWSVISQKLGSKSTTMVRNYYQRNAAQyGWKSIVEESDNKRNTTRNNFMQQAQMVM 1157
                      58999****************************************9876525777888788888877777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1781  (0.0993363); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.46
# Mc/sec: 9726.34
//
Query:       CCD22233.1  [L=2150]
Description: hypothetical protein NDAI_0A00750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-119  398.6   1.0   2.7e-119  397.6   1.0    1.5  1  Beach     Beige/BEACH domain
    3.9e-08   33.3   0.5    4.2e-07   30.0   0.1    2.9  2  PH_BEACH  PH domain associated with Beige/BEACH


Domain annotation for each model (and alignments):
>> Beach  Beige/BEACH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.6   1.0    3e-123  2.7e-119       2     276 .]    1547    1827 ..    1546    1827 .. 0.98

  Alignments for each domain:
  == domain 1  score: 397.6 bits;  conditional E-value: 3e-123
       Beach    2 kWqkgeisnfeYLmalNtlagRsfndlsqYpvfPwvlkdyeseeldledektyRdLskpigalneerleklkeryeelee....eepkflygshyss 94  
                  +Wq+ge+snf YL +lNtlagRsfndl+qYpvfPwv++dy+se+ldl+++k+yRdLskp+ga++e+r+++++erye l++    ++p+f+yg+hyss
  CCD22233.1 1547 MWQNGELSNFYYLNILNTLAGRSFNDLTQYPVFPWVIADYTSENLDLSNPKSYRDLSKPMGAQTERRRNEFIERYEALHSlndpQSPPFHYGTHYSS 1643
                  8****************************************************************************655667899*********** PP

       Beach   95 aaivlyylvRlePftelalelqsgkfdvadrlfksieeawesvt.esesdvkEliPeffylpefllnsnnldlglkqe.ekvddVeLPpwakkspee 189 
                  a+iv ++l+Rl+Pf + +l lq+gk +++drlf+s+e+aw+s++ e+++dv+EliPeff+lpe+++n nn+d+g+ ++ +kv++V+LPpwa+++p+ 
  CCD22233.1 1644 AMIVSSFLIRLKPFIDSFLLLQDGKINHPDRLFNSVERAWSSSSaENTTDVRELIPEFFFLPELFININNFDFGKDHNkSKVNNVALPPWANNDPKV 1740
                  ******************************************997899**************************987559***************** PP

       Beach  190 FvrihreaLeseyvsenLheWIDliFGykqrgeeavkaknvfhpltyegevdlekiedeeekkaieaqikefGqtPkqlfkkphpkr 276 
                  F+r++reaLes+yvsenLh+WIDliFG+kq+ge+a++a nvf+ l+y+g+v+le+i+de+e++a+   i++fGqtP qlf++php+r
  CCD22233.1 1741 FIRKNREALESSYVSENLHKWIDLIFGFKQKGERAIEAVNVFNRLSYPGSVNLENIDDENERRAVVGIIHNFGQTPLQLFEEPHPPR 1827
                  *************************************************************************************97 PP

>> PH_BEACH  PH domain associated with Beige/BEACH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1   4.7e-11   4.2e-07      34      98 ..    1421    1485 ..    1373    1487 .. 0.82
   2 ?   -0.8   0.0      0.19   1.7e+03      14      87 ..    1906    1983 ..    1899    1988 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 4.7e-11
    PH_BEACH   34 eseeeseltadkkkkdkewklseikevhlrrYlLrktAlEiFladrtsllfnFeskkerrkvlka 98  
                   s+++ ++  +k ++   w+l +++ v ++ +lLr++A+E+ +++r s++f+F++ ++r++v++a
  CCD22233.1 1421 SSSSNPNQDIPKVREVHVWNLFQMTFVIKKPFLLRDVAIEVLFENRVSCFFSFNDCASRNSVYHA 1485
                  445556666777788899*******************************************9986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.19
    PH_BEACH   14 lsittkelvFtad..seeeeaseseeeseltadkkkkdkewklseikevhl..rrYlLrktAlEiFladrtsllfnFe 87  
                  ls+  +e++Ft    +e ++    ++e  +t+d++   k wkl++ k+ ++    Y + +   E++  d+++ l++++
  CCD22233.1 1906 LSLEINEVIFTNVheTEITSFLFISTELFSTGDSSGLIKIWKLDKFKQLKHlgNLYGHLSEIKEMHSYDNQNSLLSLD 1983
                  56667788887653355556667889999999999********99999875224566666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.48
# Mc/sec: 13473.54
//
Query:       CCD22234.1  [L=138]
Description: hypothetical protein NDAI_0A00760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-46  155.6   2.3    6.3e-46  155.3   2.3    1.1  1  Ribosomal_S11  Ribosomal protein S11


Domain annotation for each model (and alignments):
>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.3   2.3   3.5e-50   6.3e-46       1     110 []      16     134 ..      16     134 .. 0.99

  Alignments for each domain:
  == domain 1  score: 155.3 bits;  conditional E-value: 3.5e-50
  Ribosomal_S11   1 GvahiqasfnntiititdlkGaevlvksaGglgvkasr.kssPyaaqlaaekaaekvldkGikavevkvkg........pGpGreaalralaraGl 87 
                    Gva+i+asfn+t++++tdl+G+e++++ +Gg++vka+r +ssPyaa+laa+++a k+++ Gi+av+vk+++        pGpG +aalralar+Gl
     CCD22234.1  16 GVARIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRdESSPYAAMLAAQDVAAKCKEVGITAVHVKIRAtggtrtktPGPGGQAALRALARSGL 111
                    89********************************************************************************************** PP

  Ribosomal_S11  88 kigriedvtPiPhdgirrpkkrr 110
                    +igriedvtP+P d++r++++rr
     CCD22234.1 112 RIGRIEDVTPVPSDSTRKKGGRR 134
                    ********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       330  (0.0184059); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1003.53
//
Query:       CCD22235.1  [L=51]
Description: hypothetical protein NDAI_0A00770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-21   75.4  12.6    2.3e-21   75.1  12.6    1.1  1  Ribosomal_L39  Ribosomal L39 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L39  Ribosomal L39 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1  12.6   1.3e-25   2.3e-21       1      41 [.       9      49 ..       9      50 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 1.3e-25
  Ribosomal_L39  1 kKlrLaKalkqNrpvPaWvrlktdrkvrynpkrRhWRrtkL 41
                   +K +LaKa kqNrp+P+W+rl+td+++ryn+krR+WRrtkL
     CCD22235.1  9 IKQKLAKAKKQNRPLPQWIRLRTDNTIRYNAKRRNWRRTKL 49
                   69**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 380.94
//
Query:       CCD22236.1  [L=587]
Description: hypothetical protein NDAI_0A00780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-81  273.1   0.0    3.7e-81  272.5   0.0    1.2  1  Mannosyl_trans3  Mannosyltransferase putative


Domain annotation for each model (and alignments):
>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.5   0.0   2.1e-85   3.7e-81       2     275 .]     162     436 ..     161     436 .. 0.96

  Alignments for each domain:
  == domain 1  score: 272.5 bits;  conditional E-value: 2.1e-85
  Mannosyl_trans3   2 kGIVisgggkesllalrlIkvLralgnkLPIeivikk.eelekefcekilpaaeepkqevwfvnakcvlnedylgkefk......gfqnKalAl 88 
                      +GIV++gggk+++l++++I+ Lr+ g++LP e++i++ +e ++efc+++lp           +n+kc++++d+l+++++      gfq+K lA+
       CCD22236.1 162 EGIVTVGGGKYTVLLMTMIEKLRQSGTTLPLEVIIPPqDEGDDEFCNNVLP----------NYNGKCIYFKDVLPDQLSdklvikGFQLKPLAI 245
                      7************************************9*************..........***************999*****99******** PP

  Mannosyl_trans3  89 lfssFeevllLDaDnvplknpdklFeseeYkktglllwkdrdlwkrstspkfyeiae..........nklepskeeskyfgkkerek.eseevp 171
                      l+ssF+++l+LDaDn+++k++d++F+++++k++ l++w  +d+w+r t p +y+ia+          n  ++ +++s+y++++e++    e+vp
       CCD22236.1 246 LLSSFKKALFLDADNLAMKDLDNIFNTQAFKQKRLIVW--PDVWRRFTAPAYYKIANikldlgkrirNLNDDVSPPSRYDDNSENSAqYLENVP 337
                      **************************************..*****************999999999988888999999998887665689**** PP

  Mannosyl_trans3 172 lhdlfgtipdhssesGlvvinKkkhlktLllalylnlygpk..ykllsqgaagegdKEtfwlaahvlgekYyfvkekaaaiGeltkkekkkses 263
                      +hdl+gtipd++sesG++vi+K +h++tL+l+ly+nlygp+  y+++sqg++g+gdKEtf++aah+lg++Yy+v++k+++ G+ ++       +
       CCD22236.1 338 FHDLKGTIPDPTSESGQMVIDKIEHFHTLILSLYYNLYGPPwyYRMFSQGTSGQGDKETFIAAAHALGKPYYQVHTKMGFKGYNDE-------K 424
                      ************************************************************************************99.......5 PP

  Mannosyl_trans3 264 keicsaqlghld 275
                        +++++l+++d
       CCD22236.1 425 LGFQGVGLLQHD 436
                      788888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4198.57
//
Query:       CCD22237.1  [L=134]
Description: hypothetical protein NDAI_0A00790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-19   68.2   0.0    6.7e-19   67.9   0.0    1.1  1  SSB       Single-strand binding protein family


Domain annotation for each model (and alignments):
>> SSB  Single-strand binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   3.7e-23   6.7e-19       2     103 ..      20     115 ..      19     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 3.7e-23
                 CEEEEEEEESSS-EEEEETTSEEEEEEEEEEEEEEEETTCCEEEEEEEEEEEEEHH.HHHHHHHH--TT-EEEEEEEEEEEEEECTTSCEEEEEEEEEE CS
         SSB   2 nkvilvGrlgkdpelrqtesGnavarftlatnrrfkdqegekdeetewhrvvvfgk.laevvaeylkkGslvyveGrlqtrkyedqegqkrysteivae 99 
                 +k+ +vGr+g++    +++++++++++++a++        ++d++t+w++v+vf++ + +++++y++kG+lvyve++   + +e+++g k +++++v++
  CCD22237.1  20 SKMSIVGRIGSEFTEYTSAKDRKYLKYSIASQP-------RRDGPTNWYNVTVFNEpQMNFLTQYVRKGALVYVEADAANYIFEREDGSKGTTLSLVQK 111
                 799******************************.......899*******************************************************9 PP

                 EEEE CS
         SSB 100 evqf 103
                 ++++
  CCD22237.1 112 DINL 115
                 9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 997.07
//
Query:       CCD22238.1  [L=528]
Description: hypothetical protein NDAI_0A00800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-28   98.7  17.8    4.3e-28   98.2  17.8    1.1  1  MFS_1     Major Facilitator Superfamily
    6.6e-05   22.4   2.7    0.00059   19.2   0.2    2.2  2  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
      0.057   13.6   2.4      0.072   13.3   0.7    2.0  2  DUF63     Membrane protein of unknown function DUF63
       0.24   11.6   6.1      0.059   13.5   1.1    2.6  3  DUF3792   Protein of unknown function (DUF3792)
        7.6    6.8   8.3        5.1    7.3   1.7    3.4  3  Pox_A14   Poxvirus virion envelope protein A14


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2  17.8   1.2e-31   4.3e-28       2     348 ..      46     418 ..      45     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: 98.2 bits;  conditional E-value: 1.2e-31
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 +l +++++ +r  ++ a+ + ++edl++ ++ +++ +t++++g+++++lp   +   + +r +l ++ ++++l  +l++f  +++   ++ r++q+l++
  CCD22238.1  46 CLQYWINYVDRVGFTNAYVSGMKEDLNMKGDDLNITTTCFTIGYIIGMLPHNLILLVVPPRLWLSFCTFAWGLL-TLGMFKVNSFkQACAIRFFQALFE 143
                 677899999999*999**99******************************************************.88887556666************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeee... 188
                 ++ f++ + ++  w++++e +   ++++++  +G+++       + ++l+       Wr++f+i   +++  ++ +l+++p  p + +r s        
  CCD22238.1 144 SCTFSGTHLILGSWYKDNELPIRSAIFTSSGLVGSMFSGFMQVSIHDNLNgrqglegWRWLFIIDFCITVPIAIYGLIFFPGVPDNTSRASRFSMTkyi 242
                 **********************************************99999***********************9999996666666666666665566 PP

       MFS_1 189 ................kgtgpaplvpawkallkdpvlw..illialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrl 267
                                     +  ++  ++ +lk+ + w  +++++l +  + f+   +++ l+  ++ g+s  +   ++  ++ +++vg++++++++ +
  CCD22238.1 243 fseqelryarrrlparDESTKLDWSI-FTRVLKRWHWWlfSFVWVLGGENLSFA-SNSTFALW-LKQQGYSlsN-RNNY--PSGIFAVGVVSSVVSAIY 335
                 87777776665554333334444444.777777776664333333333333333.33333334.7777777654.5555..555566666669999999 PP

       MFS_1 268 sdrlgrrrrlllallllllaalglallavtssavllll.vlvl..iGf.glgfvfpsllalasdlappeeagtasglfntagslg 348
                 + +l++ r + +a+++ +++++  +++     ++ +++ + +l  iG  g++++f+ +++++ d +  +e++ +++ +n++++++
  CCD22238.1 336 LSKLQKARHWHVAVFISIVMCVVSIMIRSNPLSPKVMFtAQYLggIGYaGQAVFFAWANTVCHDDL--QERAIVLASMNMFSGAV 418
                 9*************99999999999999995555555544444569999*****************..9**********998865 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   1.6e-07   0.00059      19     167 ..      67     217 ..      56     239 .. 0.89
   2 ?    3.2   0.2     0.013        45     133     170 ..     327     364 ..     306     416 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.6e-07
       MFS_4  19 llaegqlslsqagllaaaNylGYLvGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrer 117
                 + +++++   ++ +  +   +GY++G l     l   + Rl l   ++a  ll+l m  ++sf    +iRf   +   +++  g+ l+l    + ++  
  CCD22238.1  67 MKEDLNMKGDDLNITTTCFTIGYIIGMLPHNLILLVVPPRLWLSFCTFAWGLLTLGMFKVNSFKQACAIRFFQALFESCTF-SGTHLILGSWYKDNELP 164
                 77788888888888899999********************************************************99998.7999************* PP

       MFS_4 118 vgallfaGvGl.Giavsgllvllllqlglsassl..Wlalavlsavllllval 167
                 + +++f   Gl G + sg + + ++    + + l  W +l ++ +++++ +a+
  CCD22238.1 165 IRSAIFTSSGLvGSMFSGFMQVSIHDNLNGRQGLegWRWLFIIDFCITVPIAI 217
                 **********66******99888776655554445699999999999998875 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.013
       MFS_4 133 sgllvllllqlglsasslWlalavlsavllllvalllp 170
                  + +v+++   +l+++  W ++  +s+v+ +++++++ 
  CCD22238.1 327 VSSVVSAIYLSKLQKARHWHVAVFISIVMCVVSIMIRS 364
                 23344445555566666788888889888888776654 PP

>> DUF63  Membrane protein of unknown function DUF63
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.7     2e-05     0.072     100     160 ..     301     362 ..     293     378 .. 0.85
   2 ?   -1.8   0.0      0.78   2.8e+03     132     169 ..     423     461 ..     386     475 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
       DUF63 100 vlliskklekk.lkkdykklyaavGvvlvlvvlllLllteevvnlevlllvlllaavltalv 160
                 +l+++++  +    ++y + ++avGvv ++v++++L   +++ ++ v +++ ++++v+++++
  CCD22238.1 301 ALWLKQQGYSLsNRNNYPSGIFAVGVVSSVVSAIYLSKLQKARHWHVAVFISIVMCVVSIMI 362
                 5666666656657899*********************************9999999988776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.78
       DUF63 132 llLl.lteevvnlevlllvlllaavltalvllllrklkl 169
                  lL+ +++ v  +e   + l++++v+t +v + +r+l +
  CCD22238.1 423 SLLFyTASMVPYFEKGCYALIATSVSTGIVSVYIRHLHI 461
                 222213445556666677777777788888777777764 PP

>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.2   4.3e+03     101     114 ..     167     180 ..     111     185 .. 0.61
   2 ?   13.5   1.1   1.7e-05     0.059      22      84 ..     299     364 ..     287     385 .. 0.79
   3 ?   -2.7   0.0       1.7   6.2e+03       8      29 ..     437     458 ..     430     466 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
     DUF3792 101 llllllagaiGGii 114
                  ++   +g +G+++
  CCD22238.1 167 SAIFTSSGLVGSMF 180
                 33333444444443 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.7e-05
     DUF3792  22 ilalllyftsls...ekvlsililiililsvfigGflagkkakkkgllnGllvGllyflillllsl 84 
                  +al+l++   s    ++++ +i+++ ++s+++ +++++k +k + +   +++ ++++++ +++ +
  CCD22238.1 299 TFALWLKQQGYSlsnRNNYPSGIFAVGVVSSVVSAIYLSKLQKARHWHVAVFISIVMCVVSIMIRS 364
                 578888886555447899999***********************************9999554433 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.7
     DUF3792   8 gllialvitlilllilalllyf 29 
                   ++al++t + + i+++ ++ 
  CCD22238.1 437 KGCYALIATSVSTGIVSVYIRH 458
                 5567888888888888877655 PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.17   6.1e+02      47      75 ..     109     136 ..     106     152 .. 0.79
   2 ?   -0.5   0.1       0.4   1.4e+03      43      65 ..     200     223 ..     176     243 .. 0.80
   3 ?    7.3   1.7    0.0014       5.1       8      60 ..     315     361 ..     310     364 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.17
     Pox_A14  47 lsivsFilgivillglllfsmygrkCkat 75 
                 ls  +F  g+ ++lg++  + +++ C+++
  CCD22238.1 109 LSFCTFAWGL-LTLGMFKVNSFKQACAIR 136
                 5666777775.689************886 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.4
     Pox_A14  43 awralsivsFilgi.villglllf 65 
                  wr l i+ F +++ +++ gl+ f
  CCD22238.1 200 GWRWLFIIDFCITVpIAIYGLIFF 223
                 699999999988773556677766 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0014
     Pox_A14   8 knyystvliaGiiLLilacifafvdfskststtdkawralsivsFilgivill 60 
                 +ny+s+++ +G++  +++     + +sk ++ + + w+++  +s ++ +v+++
  CCD22238.1 315 NNYPSGIFAVGVVSSVVSA----IYLSKLQK-A-RHWHVAVFISIVMCVVSIM 361
                 7999*******97665555....569**999.4.4899999999999888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       969  (0.0540465); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 4026.06
//
Query:       CCD22239.1  [L=890]
Description: hypothetical protein NDAI_0A00810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.43   11.3   3.3        3.5    8.4   0.0    3.4  3  Cbl_N2    CBL proto-oncogene N-terminus, EF hand-like domain


Domain annotation for each model (and alignments):
>> Cbl_N2  CBL proto-oncogene N-terminus, EF hand-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00019       3.5      47      80 ..     290     325 ..     272     328 .. 0.84
   2 ?    1.5   0.2     0.028   5.1e+02      23      58 ..     442     477 ..     432     480 .. 0.72
   3 ?   -3.4   0.1      0.94   1.7e+04      42      62 ..     607     625 ..     596     627 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00019
                 HHHH-TT-SSEEEHHHH..HHHHHHH--GGGHHHHH CS
      Cbl_N2  47 kstidltcndyisvfef..dvFtrlFqPwssllknW 80 
                 +++++ltc d +++  +  ++F +lF P ss++ n+
  CCD22239.1 290 NTVLKLTCLDVVQWETYwkSIFEKLFGPESSIIDNY 325
                 57899*******98777669*************996 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.028
                 EHHHHHHHHHHHH---GGG.HHHHHHHH-TT-SSEE CS
      Cbl_N2  23 pwkefkealekvhkvesskealaLkstidltcndyi 58 
                   ++ +e+ +++ ++++++++++Lk++  ltc++ i
  CCD22239.1 442 AAENKNETNQNHTSLSHKESETSLKTIESLTCKELI 477
                 5555555556666777788899**********9987 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 0.94
                 .HHHHHHHH-TT-SSEEEHHH CS
      Cbl_N2  42 ealaLkstidltcndyisvfe 62 
                 ++ ++ s id+  ndy s+fe
  CCD22239.1 607 DSFNISSYIDI--NDYSSIFE 625
                 45667777776..77888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 6568.21
//
Query:       CCD22240.1  [L=184]
Description: hypothetical protein NDAI_0A00820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-38  129.3   0.2    5.5e-38  129.3   0.2    1.6  2  Ribosomal_L22  Ribosomal protein L22p/L17e
  ------ inclusion threshold ------
      0.069   11.3   0.2      0.072   11.3   0.2    1.0  1  CRT10          CRT10
      0.078   13.1   0.1         25    5.1   0.0    2.7  3  Fis1_TPR_C     Fis1 C-terminal tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Ribosomal_L22  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   0.2   9.3e-42   5.5e-38       1     103 []      17     151 ..      17     151 .. 0.98
   2 ?   -1.3   0.1      0.43   2.6e+03      75      89 ..     163     177 ..     154     182 .. 0.70

  Alignments for each domain:
  == domain 1  score: 129.3 bits;  conditional E-value: 9.3e-42
                    EEEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHT..-SST..............................THHHHHHHHHHHHHHHH..HT-GGGE CS
  Ribosomal_L22   1 akgsnlrvsfkklrevarlIrgmkveeAlkyLkf..skkk..............................aakfvlklLknaeanaelkgldvdsl 64 
                    a+gs+lrvsfk++re+a+++ g ++++A kyL++  ++++                              + kfv  lL+na anae kgld+++l
     CCD22240.1  17 ARGSYLRVSFKNTRETAQAVSGWELTKAQKYLDQvlEHQRaipfrrfnssigrtaqgkefgvtkarwpakSVKFVQGLLQNAAANAEAKGLDATKL 112
                    799*******************************9877779******************************************************* PP

                    EEEEEEEEEEEEEEEEEEESTTEEEEEEEEEEEEEEEEE CS
  Ribosomal_L22  65 vIeeiqvnkgpklkrrtyrArGrinpirkspchievvlk 103
                    ++++iqvn++pk++rrtyrA+Grin++++sp+hie+v++
     CCD22240.1 113 YVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151
                    ************************************995 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.43
                    EEEEEEEEESTTEEE CS
  Ribosomal_L22  75 pklkrrtyrArGrin 89 
                    +k+ r+  r rGri 
     CCD22240.1 163 KKVVRLSSRQRGRIA 177
                    566788889999986 PP

>> CRT10  CRT10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   1.2e-05     0.072     417     501 ..      27     118 ..       6     175 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.2e-05
       CRT10 417 kkvkekesswqeesglklqeekdykekklnsqdleesleierkv..........sdnievladlsvliskdkteklkqieilelelestklsdid 501
                 k+++e++   q  sg +l++ ++y+++ l+ q  +  +++++++            +  + a++  ++++  ++   ++e   l++++  +s i+
  CCD22240.1  27 KNTRETA---QAVSGWELTKAQKYLDQVLEHQRAIPFRRFNSSIgrtaqgkefgVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQ 118
                 3455555...99999**************************************977777777777777777777777777777777766666554 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0044        26      16      31 ..      40      55 ..      39      58 .. 0.89
   2 ?    5.1   0.0    0.0041        25      19      41 ..      86     108 ..      77     110 .. 0.90
   3 ?   -3.8   0.0       2.3   1.4e+04      10      20 ..     132     142 ..     132     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0044
                -HHHHHHHHHHHHHHT CS
  Fis1_TPR_C 16 eYseArryvdalLeiE 31
                e ++A +y+d++Le++
  CCD22240.1 40 ELTKAQKYLDQVLEHQ 55
                6799**********98 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0041
                 HHHHHHHHHHHHTTS-HHHHHHH CS
  Fis1_TPR_C  19 eArryvdalLeiEPenrQaqsLk 41 
                 ++ ++v+ lL+    n  a+ L 
  CCD22240.1  86 KSVKFVQGLLQNAAANAEAKGLD 108
                 789*****************996 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.3
                 HHHHHT-HHHH CS
  Fis1_TPR_C  10 GhyklgeYseA 20 
                 +h ++ +Y+ +
  CCD22240.1 132 AHGRINKYESS 142
                 67899999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1491.37
//
Query:       CCD22241.1  [L=684]
Description: hypothetical protein NDAI_0A00830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-66  224.6   7.8    1.2e-66  224.6   7.8    4.5  3  CASP_C         CASP C terminal
     0.0031   17.7   7.8     0.0031   17.7   7.8    5.7  5  Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
  ------ inclusion threshold ------
       0.28   11.3   6.6        2.2    8.4   0.1    3.9  3  YojJ           Bacterial membrane-spanning protein N-terminus
        1.3    8.4  73.8       0.88    9.0   2.8    5.0  4  Leu_zip        Leucine zipper


Domain annotation for each model (and alignments):
>> CASP_C  CASP C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.7      0.19   8.4e+02      25     138 ..      26      69 ..      14     111 .. 0.49
   2 ?   -3.6   9.9       1.3   5.7e+03       5      77 ..     243     320 ..     234     333 .. 0.58
   3 !  224.6   7.8   2.7e-70   1.2e-66       2     251 ..     414     646 ..     413     647 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.19
      CASP_C  25 EndllkvqseasnaskasdassagsevsrkaesegrksptssiisgaeesesaesssessiLpivtsQRDRFrkrnaeLEeelrkqeetvsslraeias 123
                 ++ +l+v+++++++ ++ +  ++ ++  +k +                                                                   
  CCD22241.1  26 DSKVLEVKEKETSSLESRKFLATETKKFKKLQ------------------------------------------------------------------- 57 
                 44444444444433322222222111111111................................................................... PP

      CASP_C 124 lqkDNlkLYEkvRYl 138
                    D  kL    + +
  CCD22241.1  58 ---DDEKLAQLNKII 69 
                 ...222222222222 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.3
      CASP_C   5 eelseleaeleeqkeLnekLEndllkvqseasnaskasdassagsevsrkaese........grk.sptssiisgaeesesa 77 
                 +el+++++++ +++e n +L + l+k+ se++++++ ++++ ++ +  ++   e        +r+ s+ s+i+++++++ ++
  CCD22241.1 243 QELESAQSRIMQLEERNVTLNTKLTKATSEEEKEAHLHAKE-LKINQLES---EnvllsasfERErSELSKIKDELQDQIKE 320
                 67777777788888888888888877777777665333333.22222221...12233344533337777777777665444 PP

  == domain 3  score: 224.6 bits;  conditional E-value: 2.7e-70
      CASP_C   2 klqeelseleaeleeqkeLnekLEndllkvqseasnaskasdassagsevsrkaes.egrksptssiisgaeesesaesssessiLpivtsQRDRFrkr 99 
                 +l+++l +l+++++e ++ n+kLE dl++v++ ++   +++d++s++s+v+r++++ +g+ sptssi++  e++e + s+++s+iLpi+t+QRDRFr+r
  CCD22241.1 414 DLNSQLMKLKSRVQEVEAQNAKLELDLESVDDISQ---NFNDTASMISGVTRQMNNrTGKLSPTSSIVGIPEDREFSASTNNSTILPIITKQRDRFRTR 509
                 68899****************************99...579*************5525666************************************** PP

      CASP_C 100 naeLEeelrkqeetvsslraeiaslqkDNlkLYEkvRYlqsYnrgskastksssessssasalganpnassveagaeldkYrkaYEeslnPfaaFrgrE 198
                 n++LE++lr  +++ ++l a+i++l++ N+kLYE++RYl+s+ ++ ++            +al  n+   +     +  +Y++ YEesl+P+a+F+++E
  CCD22241.1 510 NMDLEKQLRLGNNEKTKLLADINKLKSQNTKLYERIRYLSSFANTDNQG-----------KALLDNSDMLD-----TEAQYSTVYEESLHPLANFKNKE 592
                 *******************************************988653...........22223333334.....456******************** PP

      CASP_C 199 ser.aykrLsllerlvlsltrlvlanrtsRnlflvYalaLHllvfltlyevssl 251
                  e+ + ++Ls+le+l+lsl+r++l+n+t+R +fl+Y+l+LH lvf++ ++v++l
  CCD22241.1 593 LEHyKKNKLSVLEKLFLSLARVILQNKTTRAAFLFYCLGLHGLVFMMSMYVINL 646
                 9987999*******************************************9875 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   7.4       2.2   9.9e+03      68     120 ..      33      81 ..      11     119 .. 0.44
   2 !   17.7   7.8     7e-07    0.0031      50     121 ..     143     214 ..     127     241 .. 0.71
   3 ?    1.5  18.3     0.069   3.1e+02      41     138 ..     241     337 ..     237     357 .. 0.80
   4 !    7.3   2.5    0.0011       5.1      86     137 ..     386     437 ..     376     470 .. 0.76
   5 ?    2.1   1.0     0.046     2e+02      72     112 ..     502     545 ..     498     604 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.2
  Jnk-SapK_ap_N  68 rekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqls 120
                    +eke +  + ++++ +e++  ++  + +ek++ql++ +++++  ++n+   ++
     CCD22241.1  33 KEKETSSLESRKFLATETKKFKKL-QDDEKLAQLNKIIKHYQHEVDNL---TQ 81 
                    222222222233443333322222.22334444444444444222222...22 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 7e-07
  Jnk-SapK_ap_N  50 aeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsr 121
                     + ++l  e ++  t  +r ++++++ + ++ee+e +w+++++el++++++l+  n+ l++k+ n+ +++ +
     CCD22241.1 143 MKSRLLDLEQNSAVTLSKRITAKEQELNSTWEEKERNWKDRENELNKQLNSLQMTNKVLSTKLANYGEEAVE 214
                    444455555555555455555666666799***********************************9776543 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.069
  Jnk-SapK_ap_N  41 lasrneeeeaeleelreeleqLeteyerekelrkraeeeleeiedqweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeyskl 136
                    l+++ e+ ++++ +l+e + +L t+++ ++  ++++e +l+ +e ++++ ++e     ++ e e+ el++  ++++dq++++++++ ++k+e ++ 
     CCD22241.1 241 LVQELESAQSRIMQLEERNVTLNTKLT-KATSEEEKEAHLHAKELKINQLESENVLLSASFERERSELSKIKDELQDQIKEVKNESISVKSELETV 335
                    6778889999**************655.55577788899999999999999999999999999999999445578999999999988888887766 PP

  Jnk-SapK_ap_N 137 he 138
                     +
     CCD22241.1 336 RR 337
                    55 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0011
  Jnk-SapK_ap_N  86 qweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklh 137
                    ++ + +k+lq+ +++l+ en +++   k+++ ql +l+++ +e++ +++kl+
     CCD22241.1 386 SLLSANKKLQSNLAELRVENMNFKNMNKDLNSQLMKLKSRVQEVEAQNAKLE 437
                    5556677888888888888888888888888888888888888877777764 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.046
  Jnk-SapK_ap_N  72 lrkraeeeleeiedqwe...eerkelqekveqleeenrelelka 112
                    +r r+  + + +e+q++   +e+ +l + +++l+++n +l  ++
     CCD22241.1 502 QRDRFRTRNMDLEKQLRlgnNEKTKLLADINKLKSQNTKLYERI 545
                    56666666667777765444677777888888888887776444 PP

>> YojJ  Bacterial membrane-spanning protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0005       2.2      15      52 ..     304     341 ..     295     345 .. 0.92
   2 ?    3.9   0.6     0.012        56       3      55 ..     404     455 ..     402     466 .. 0.75
   3 ?   -2.6   0.0       1.3   5.9e+03      26      50 ..     514     538 ..     502     545 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0005
        YojJ  15 keeLeqiekeleevlkaldeedeClLcelesirekfae 52 
                 + eL++i+ el++ +k+ ++e   + +ele +r k+++
  CCD22241.1 304 RSELSKIKDELQDQIKEVKNESISVKSELETVRRKLNN 341
                 689******************************99987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.012
        YojJ   3 ekcleeelkeklkeeLeqiekeleevlkaldeedeClLcelesirekfaelet 55 
                 e+++++++ ++l  +L++ + +++ev ++  + +   L   ++i ++f++  +
  CCD22241.1 404 ENMNFKNMNKDLNSQLMKLKSRVQEVEAQNAKLE-LDLESVDDISQNFNDTAS 455
                 67899999*****************988744333.335556666666666555 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.3
        YojJ  26 eevlkaldeedeClLcelesirekf 50 
                 e+ l+  ++e   lL ++++++ + 
  CCD22241.1 514 EKQLRLGNNEKTKLLADINKLKSQN 538
                 5555555677788899988888765 PP

>> Leu_zip  Leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9  21.3      0.03   1.3e+02      80     244 ..      15     184 ..       7     191 .. 0.75
   2 ?    7.8  21.3   0.00046       2.1      88     252 ..     198     344 ..     191     359 .. 0.55
   3 ?    9.0   2.8    0.0002      0.88     131     197 ..     401     464 ..     368     479 .. 0.61
   4 ?    4.9   4.7    0.0036        16     137     235 ..     505     606 ..     482     624 .. 0.46

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.03
     Leu_zip  80 qaDiselenReLlEkiaefEekefkssnkkeseelkkkkLePlnegGgaeLLkkeierLkeenekLkerlkelEkqatsa...leeksklekalkelqk 175
                 +aD+ +l+   L  k+ e+ eke++s ++++   +++kk + l++    + L+k i++ + e ++L +r k  E+ ++++   l+e    +  l++  +
  CCD22241.1  15 EADLTKLQE-SLDSKVLEVKEKETSSLESRKFLATETKKFKKLQDDEKLAQLNKIIKHYQHEVDNLTQRSKFSEDIVIEVysrLSEAPDPKPLLQNSID 112
                 567777764.47779999******9999999****************************************9998776551115566666677777777 PP

     Leu_zip 176 elgekkdekenskeiskleeklael...kldlektleektasaksleedlastkhelLkvqeqLelaekeLe 244
                 +l++ +d+k+ +++i++le++la+     +  ++ l+ +++sa +l++ ++   +el +  e+ e   k+ e
  CCD22241.1 113 KLSKIEDSKALKEKIAHLEDSLAKYadyDTMKSRLLDLEQNSAVTLSKRITAKEQELNSTWEEKERNWKDRE 184
                 777777777777777777777766410044455567778899999999999999998887777666554444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00046
     Leu_zip  88 nReLlEkiaefEekefkssnkke.seelkkkkLePlnegGgaeLLkkeierLkeenekLkerlkelEkqatsaleeksk.lekalkelqkelgekkdek 184
                 n+ L  k+a++ e+ ++s++ ++ +++++++  +P + +  ++LL +e+e  +   ++L+er  +l++++t+a +e++k  + + kel+ ++ e++++ 
  CCD22241.1 198 NKVLSTKLANYGEEAVESTGDNQgNFNNTNNTTTP-KSSTEFNLLVQELESAQSRIMQLEERNVTLNTKLTKATSEEEKeAHLHAKELKINQLESENVL 295
                 66666667777666666665555133333444444.455677777777777777777777777777777777766655412233333333333333333 PP

     Leu_zip 185 enskeiskleeklaelkldlektleektasaksleedlastkhelLkvqeqLelaekeLekkfqqtaa 252
                   s+++++ +++l+++k +l+ + +e ++++ s++++l + +++l                   + + 
  CCD22241.1 296 -LSASFERERSELSKIKDELQDQIKEVKNESISVKSELETVRRKLN------------------NYSD 344
                 .255555556666666666666666666666666666666655543..................3333 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0002
     Leu_zip 131 LkkeierLkeenekLkerlkelEkqatsaleeksklekalkelqkelgekkdekenskeiskleekl 197
                 L+ e  + k+ n+ L+++l +l ++++++  ++ kle +l+++++  ++ +d+++    is + +++
  CCD22241.1 401 LRVENMNFKNMNKDLNSQLMKLKSRVQEVEAQNAKLELDLESVDDISQNFNDTAS---MISGVTRQM 464
                 4444445566667777777777777777777777777777777665555554444...333333333 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0036
     Leu_zip 137 rLkeenekLkerlkelEkqatsaleeksklekalkelqkelgekkdeke..nskeiskleeklaelkldlektleek.tasaksleedlastkhelLkv 232
                 r +  n+ L+++l+  +++ t++l + +kl+++  +l +++   ++ ++  n+ +    ++ + + +++++   ee+ +  a+  +++l + k++ L+v
  CCD22241.1 505 RFRTRNMDLEKQLRLGNNEKTKLLADINKLKSQNTKLYERIRYLSSFANtdNQGKALLDNSDMLDTEAQYSTVYEESlHPLANFKNKELEHYKKNKLSV 603
                 444444444444444444444444444444444433333333332222211111111112223333333333333331222233334555555555555 PP

     Leu_zip 233 qeq 235
                  e+
  CCD22241.1 604 LEK 606
                 554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2354  (0.131296); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:00.53
# Mc/sec: 3918.84
//
Query:       CCD22242.1  [L=499]
Description: hypothetical protein NDAI_0A00840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-86  289.0  23.8    4.2e-86  288.8  23.8    1.1  1  STE3      Pheromone A receptor
  ------ inclusion threshold ------
       0.82   10.0   0.0       0.82   10.0   0.0    3.2  4  DUF2516   Protein of unknown function (DUF2516)


Domain annotation for each model (and alignments):
>> STE3  Pheromone A receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.8  23.8   4.7e-90   4.2e-86       2     289 .]      10     289 ..       9     289 .. 0.98

  Alignments for each domain:
  == domain 1  score: 288.8 bits;  conditional E-value: 4.7e-90
        STE3   2 lsflafvlvliplpwhlrarnigalllilwllllnlisfvnaiiWsgnvvdkapv...wCDisskliiaasvglpaallcIvrrLykilslravllssk 97 
                 l+ la++ +++pl wh ++rni+a++li+wlll+n+i++vna iWsg+++ + ++   wCDi +kl+++a+vg+++a++ Iv++L++il+++ vl + +
  CCD22242.1  10 LCSLAVLSLIPPLAWHSHTRNIPAIILITWLLLMNIICIVNASIWSGTDFVTRWNgegWCDIVIKLQVGANVGISCAITNIVYNLHSILKADVVLPDLN 108
                 5789**********************************************999999**********************************999999999 PP

        STE3  98 ekrrkliidlliclgiPllimalhyivqghRydIiediGCvpalyntwlalvlvliwpliislvaavyavltlrafikrrkqfkellsssnsglnksrf 196
                 + + +++ dlli+lg+P+++m+l+y++q  Ry I++++GC++ l++tw+++vl+++w+li+sl+a+vya l+l  f+k+rk++k++l ++nsgln +rf
  CCD22242.1 109 S-WTRIWKDLLISLGTPVVVMGLSYLLQVFRYGIARYNGCQNLLSPTWMTTVLYTMWMLIWSLIATVYALLVLAVFFKKRKDVKDILYCTNSGLNLTRF 206
                 9.************************************************************************************************* PP

        STE3 197 lRLlalalliilltlplsiyllvsnltqsplqpwysweevha..dfstilkvpasewkasskevsalelnrwilvvlailfflfFGfgkeavksY 289
                 +RLl+++++i+l+++p+s+y++v++l+q++    ys++++h+   ++ i+k++  +  +          n w++v++++l+f++FG+g++a+++Y
  CCD22242.1 207 ARLLIFCFIIVLVMFPFSLYSFVQDLEQVSG--HYSFKDTHSstLWNVIIKFDPGKPVY----------NIWLYVLMSYLVFVIFGLGTDALNMY 289
                 **************************99875..5********999*******9999999..........*************************9 PP

>> DUF2516  Protein of unknown function (DUF2516)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.62   5.6e+03      12      29 ..      37      54 ..      26      69 .. 0.61
   2 ?    0.2   1.7       0.1   9.2e+02      12      75 ..     122     180 ..     113     191 .. 0.61
   3 ?   10.0   0.0   9.1e-05      0.82       7      49 ..     212     254 ..     207     257 .. 0.92
   4 ?   -1.4   0.0      0.34     3e+03      43      60 ..     264     281 ..     258     297 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.62
     DUF2516 12 alvvlvlslvAlvdalrr 29
                 + +l+++++ +v+a + 
  CCD22242.1 37 ITWLLLMNIICIVNASIW 54
                334444555555555444 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.1
     DUF2516  12 alvvlvlslvAlvdalrrradaFeaagkrtKpfWlailgvallvlllglfgalsllgliavvaa 75 
                 ++ v+v++l  l++++r   + ++  + +  p+W+  +  ++ +l+++l     + ++ a+ + 
  CCD22242.1 122 GTPVVVMGLSYLLQVFRYGIARYNGCQNLLSPTWMTTVLYTMWMLIWSL-----IATVYALLVL 180
                 5556666666666666666677777777777777777777776666632.....3333333333 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 9.1e-05
     DUF2516   7 vllllalvvlvlslvAlvdalrrradaFeaagkrtKpfWlail 49 
                 + ++++lv++ +sl+ +v+ l + +  +   ++++ ++W +i+
  CCD22242.1 212 FCFIIVLVMFPFSLYSFVQDLEQVSGHYSFKDTHSSTLWNVII 254
                 6689999********************************9997 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.34
     DUF2516  43 pfWlailgvallvlllgl 60 
                 ++Wl +l+  l+++++gl
  CCD22242.1 264 NIWLYVLMSYLVFVIFGL 281
                 566666666666655532 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1271  (0.0708907); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3588.37
//
Query:       CCD22243.1  [L=802]
Description: hypothetical protein NDAI_0A00850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-15   56.1   0.0    9.3e-15   54.9   0.0    1.7  1  Helicase_C  Helicase conserved C-terminal domain


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   5.2e-19   9.3e-15       9     107 ..     298     393 ..     272     397 .. 0.89

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 5.2e-19
                 HHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTT CS
  Helicase_C   9 llkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqriGR 106
                 +l + +++ k++i+++ ++++   +ll       ++ +hg+lp++ + +  ++f +++s+ +Li t+ +++Gidip+v++V ++d+  +v +yiq +GR
  CCD22243.1 298 FL-TYADDTKVIIVCREKSTV---ELLGAVTFCDSIWVHGDLPTEVKVKKTQDFIQDSSKrILIGTKLVSEGIDIPEVKMVLIVDYLPSVGEYIQTAGR 392
                 34.678999************...666444459999******************9888888************************************** PP

                 S CS
  Helicase_C 107 t 107
                  
  CCD22243.1 393 L 393
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 6075.67
//
Query:       CCD22244.1  [L=395]
Description: hypothetical protein NDAI_0A00860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-84  282.5   2.1    3.6e-84  281.9   2.1    1.3  1  DUF2401   Putative TOS1-like glycosyl hydrolase (DUF2401)
    1.1e-24   86.6   0.0    2.3e-24   85.6   0.0    1.6  1  DUF2403   Glycine-rich protein domain (DUF2403)


Domain annotation for each model (and alignments):
>> DUF2401  Putative TOS1-like glycosyl hydrolase (DUF2401)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.9   2.1     4e-88   3.6e-84       1     228 [.     104     337 ..     104     338 .. 0.96

  Alignments for each domain:
  == domain 1  score: 281.9 bits;  conditional E-value: 4e-88
     DUF2401   1 gswkrvayYnaesgtaenlvFlnnkggksgsGvfdsalgnslsyassdgtsgassptvledvll.ssnkEiiifsdkkCe....dkdCgyyregivayh 94 
                 ++w+r+ayY+a+++t en++Fl+++g  s       +lg++lsya +dg+s+a+s+t+l+ ++l +s++E++ifs+ +C     +kdCg+yregi+ay+
  CCD22244.1 104 SDWSRNAYYDANAQTGENVTFLTKAGSDSP------CLGKALSYAGDDGVSSAASSTLLKYSTLiTSDQEYAIFSNVSCPksgaNKDCGVYREGIPAYY 196
                 58************************9777......************************87766**************999999************** PP

     DUF2401  95 GfgGakkvflfefsmpedkksssn....kdmPAiWlLnakiprtaqYpgnaeCsCwksgCGelDifEvlesg.seklkstlhtaqgae....gggssdy 184
                 GfgG++k+flfef+mp++++s+s+    +dmPAiWlLn++iprt+qYp+na+CsCw+sgCGe+DifE+++ + +++l+st+ht+qg+e    g++++ y
  CCD22244.1 197 GFGGTTKMFLFEFQMPTETQSNSStfeyYDMPAIWLLNDHIPRTSQYPTNANCSCWSSGCGEFDIFEIMNGTeRNNLYSTFHTFQGIEdlgtGIQANGY 295
                 ******************9998877889******************************************9989*************99*9999***** PP

     DUF2401 185 feRptdetikvavvfdseestvkivelddstdfdeslsaetves 228
                 + R+t +t+k++v+fds++  ++++++++st+fd++l+ ++v+s
  CCD22244.1 296 IPRDTANTMKGGVIFDSNG--NTVTFISNSTSFDANLTVADVNS 337
                 *******************..99***************999987 PP

>> DUF2403  Glycine-rich protein domain (DUF2403)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   2.5e-28   2.3e-24       1      63 []      25      92 ..      25      92 .. 0.96

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 2.5e-28
     DUF2403  1 daitytnvggsGsYkeVtsmdes....sgeCeteeks.fsGplaPldeelSvhfRGPlkLkqfavYtp 63
                d+i++ nvg++G+Y+ V++m++     +++Ce+ +++ fsG++aPl+++lSvhfRGPl+L++fa+Yt+
  CCD22244.1 25 DKISFANVGFAGTYQPVKKMSNIdnndTCTCEVGDRTwFSGENAPLSDYLSVHFRGPLQLNKFAYYTS 92
                68*******************889999*********99****************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3188.60
//
Query:       CCD22245.1  [L=941]
Description: hypothetical protein NDAI_0A00870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-66  223.2   0.6    3.3e-66  222.2   0.6    1.6  1  Longin_2  Yeast longin domain
  ------ inclusion threshold ------
       0.28   11.8   3.8       0.18   12.4   0.5    2.4  2  POX       Associated with HOX


Domain annotation for each model (and alignments):
>> Longin_2  Yeast longin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.2   0.6   3.7e-70   3.3e-66       1     165 []     144     324 ..     144     324 .. 0.94

  Alignments for each domain:
  == domain 1  score: 222.2 bits;  conditional E-value: 3.7e-70
    Longin_2   1 kFrllvaeetgqmasrnnyrvvldystskgs..siekirlselkeyiFGspvrlsdstqsdKirtipnselilitriFyleskksnrlaislcipelll 97 
                 +Fr+l++eet++ma++nnyr++ld++++kg+  +ie+ir+selkeyiFGspvr+sd++qsdK+r++pns+++litriFyl+s  snr+aislci+++l+
  CCD22245.1 144 AFRFLLTEETNEMACVNNYRILLDHNFTKGEgsKIEQIRHSELKEYIFGSPVRSSDYIQSDKFRSVPNSDFTLITRIFYLNS-ISNRFAISLCISKFLF 241
                 5****************************9999*************************************************.**************** PP

    Longin_2  98 pviteaWsqiskwldeiQkiilsllkkellkekekel...............dallpldlrvkfpkevdkiiqklqkklipcl 165
                 pvi+e+W+ is+wl++iQ+ii+s++++++ ++k+++                d++lp++l+++fp+e+ kiiq+l+kkl+pcl
  CCD22245.1 242 PVISESWTYISHWLTDIQDIIASIVAENAGTCKGTTNsnnmeqftyqnrsisDGVLPVNLEIAFPDEIGKIIQVLAKKLMPCL 324
                 ***************************8777773333345566888888888888***************************7 PP

>> POX  Associated with HOX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5     2e-05      0.18      34     100 ..     427     493 ..     400     510 .. 0.75
   2 ?   -2.3   0.2      0.66   5.9e+03      40      50 ..     851     861 ..     823     902 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2e-05
         POX  34 kkkkkakkskeseegegsssssssasssaelssaerqelqrkkakLlsmldeVdrrYrqYldqmqav 100
                 ++++++++s +s ++ +ss+ssss+s s++++ +  ++ +r k++L+++++  d   +q +d+m + 
  CCD22245.1 427 SSTNEENSSGTSIAQTHSSHSSSSTSTSNSVQMSVSKNRERHKQRLVNLVEATDATSTQSVDKMTSL 493
                 2233334444444555555555666668888888999999***************999999999865 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.66
         POX  40 kkskeseegeg 50 
                  + +++e++++
  CCD22245.1 851 PSPSSNEASSN 861
                 11111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1261  (0.070333); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 6776.69
//
Query:       CCD22246.1  [L=522]
Description: hypothetical protein NDAI_0A00880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-26   93.4  13.7    3.8e-15   56.0   4.5    2.4  2  Zip        ZIP Zinc transporter
  ------ inclusion threshold ------
       0.06   13.9   1.7       0.31   11.6   0.0    3.0  3  DUF3899    Domain of unknown function (DUF3899)
      0.077   11.4   2.7       0.22    9.9   2.6    1.7  1  Mem_trans  Membrane transport protein


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   1.8   7.1e-15   4.3e-11       6     149 ..      11     151 ..       7     262 .. 0.72
   2 !   56.0   4.5   6.3e-19   3.8e-15     148     299 ..     304     474 ..     273     517 .. 0.71

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 7.1e-15
         Zip   6 laiiaililsllgllgpllvpkiskl..lsklllslllafavGvllgtaflhLlPealealeesqleeehthplagllvllGflllllveklltmivek 102
                 +++i+ +++ + +l++pll+   +    ++++l+++ l +++G +++t++  +lPe++e  +            +++ +++G++  l+++ l++ + ++
  CCD22246.1  11 YSLISSILCIMGSLCVPLLSVIFKTKqhHNSRLVNYGLSLSAGSMIATSLAKMLPEVTEDNK----------YTVFFGFMGGICGSLFLNYLVHAFASE 99 
                 55555555555555555544433333569******************************444..........468999******************999 PP

         Zip 103 ...ksshkektpkkasssss..esaakksvsndkveeseekedhvaeadtda 149
                    ++sh+e  ++++ss s+   ++++   ++++v++     ++ +  ++d+
  CCD22246.1 100 sliHCSHDEVDESTESSTSPphINETSAISHDNSVNDYASISNNTSLSEHDP 151
                 ***7777777777777666644233333333333333333334444333333 PP

  == domain 2  score: 56.0 bits;  conditional E-value: 6.3e-19
         Zip 148 dadskeelrngkqeksesekeqas............eeedkeklaslkvraiilllglilHsfidGLAlG....vssssstgislfiAvllHelpeelg 230
                 ++ s++e++++ +++++++++  +            +++ +++ ++l  +++   l l lH+f++G+ +        s s g+s+f+++++H+++e+++
  CCD22246.1 304 NPISSQEHQHSPSHSHSHSHS--HgdrnystvstihHHHLETPFSKLLSIGMQTCLVLTLHKFPEGFIIYytntSDMSESLGFSIFLSLTIHNFVEGFA 400
                 222222222222222222222..2335566777776999999****************************55433335679****************** PP

         Zip 231 lgaiLlkaglsrkkav.llnllfaltaplGiliGilvrs....isessgaeivsgillalsaGtflYvalvell 299
                 ++++ + a  s++ a+ +  +l + + p+G+l+G l+      ++ + + ++    ll+l+aG +l ++l  + 
  CCD22246.1 401 MTLPFYTAFQSKWIAIvITTILGGGSQPMGALLGYLIFRnkerDGDGDQPLAQMDFLLSLTAGFLLVIGLQMFQ 474
                 ********9999999978888888999**********9989877777777888889**********99997665 PP

>> DUF3899  Domain of unknown function (DUF3899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4       0.4   2.4e+03       6      38 ..      13      45 ..      10      89 .. 0.49
   2 ?   -2.2   0.0         1     6e+03      45      45 ..     324     324 ..     281     360 .. 0.55
   3 ?   11.6   0.0   5.1e-05      0.31      21      82 ..     460     521 ..     452     522 .] 0.65

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.4
     DUF3899  6 llglllliigillivlnsGfFdgfsygfrklkk 38
                l++ +l i g l++ l s +F++ +++  +l +
  CCD22246.1 13 LISSILCIMGSLCVPLLSVIFKTKQHHNSRLVN 45
                566666666666655555555554444444443 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
     DUF3899  45 k 45 
                 +
  CCD22246.1 324 S 324
                 1 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 5.1e-05
     DUF3899  21 lnsGfFdgfsygfrklkklflkk.skkddsyyeykekkkesskkstrplliiGlllivlsivl 82 
                 l +Gf+ ++ + + + +  f+    +++d+++e+ ++  +ss + + +++ +G++li+ s  +
  CCD22246.1 460 LTAGFLLVIGLQMFQTGVGFSDGhHHHQDEDEEEIQQ-SHSSGTTCLKWCCAGTILIIASSMF 521
                 5666777776666666666664333333333333333.334*****************99765 PP

>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.6   3.7e-05      0.22     103     219 ..      17     187 ..       2     194 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 3.7e-05
   Mem_trans 103 tlpNtlvlgipllkalyge.................................ygvslmvqvvvlqciiiytlll......................... 143
                  l  +++l +pll+ ++++                                 +  +++v++  ++ i      +                         
  CCD22246.1  17 ILCIMGSLCVPLLSVIFKTkqhhnsrlvnyglslsagsmiatslakmlpevtEDNKYTVFFGFMGGI------Cgslflnylvhafaseslihcshdev 109
                 5555666666666666666666666666644444444444444444444444333344433333333......02222234556666666667777777 PP

   Mem_trans 144 .flfeyrgaklliseefp.dtaasivsikvdsdvvsldgrkpleteaeikedgklhvtvrksnasrsdivssstprps 219
                     e++    +i+e +  ++ +s++     s+ +sl++++pl    +i +d  l+vt  ks+ s+ + +s  t ++s
  CCD22246.1 110 dESTESSTSPPHINETSAiSHDNSVNDYASISNNTSLSEHDPLLRKSKIHDDIDLKVTTNKSVTSETEPYSALTHKKS 187
                 667778888889999999999999*******************************************99997777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       996  (0.0555525); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3656.40
//
Query:       CCD22247.1  [L=641]
Description: hypothetical protein NDAI_0A00890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-85  285.9  40.8    6.2e-85  285.6  40.8    1.0  1  AA_permease    Amino acid permease
    8.5e-39  133.6  46.8    1.2e-38  133.1  46.8    1.1  1  AA_permease_2  Amino acid permease
      0.007   15.9   2.9      0.007   15.9   2.9    3.4  3  DUF1129        Protein of unknown function (DUF1129)


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.6  40.8     1e-88   6.2e-85      11     474 ..      72     528 ..      64     533 .. 0.97

  Alignments for each domain:
  == domain 1  score: 285.6 bits;  conditional E-value: 1e-88
  AA_permease  11 iGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp..ksggfytyasrflgpelGfviGln......ylfswitvlaleltaasil 100
                   ++g+ +++++ l ++Gp++++ ++l++g++i++  lslge+++++p   + + +++a ++l+  +++++G++      +++++it+++++lt++ il
   CCD22247.1  72 APLGMSTSMAIGLINGGPATIIWGFLISGICIWFCSLSLGEVVSKFPmeLHVSSAMLAPKKLKLICSWYTGWLmllgnwTMSTSITFAGAQLTISLIL 169
                  5899********************************************************************************************** PP

  AA_permease 101 iqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefi..lalikiiaiiafiivg.iillaggkpnkgagfrflgdngsifknnlppgfakeee 195
                  +++  l+++   +  t+++f++v++i+ l+++k+ +++e+i  +++i+ii++i fi ++  i++ g+        ++l++++++f+n l+++     +
   CCD22247.1 170 MTNSDLISEKYLIGFTVIIFYLVVTIVGLINLKFARFIETInrACVIWIIYAILFIDILlLIFHRGKY-------HSLKYSLFHFDNSLSGY-----S 255
                  ******9999989999*******************************************666666655.......6799*************.....9 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplin 293
                  g + +f+++f++++f+++G+++++++a+Evk Pek+iP++++++v++ +++ + +l+ i++++p +d+ ++n+++ +  +++if++++ + ++++++ 
   CCD22247.1 256 GFLISFLIGFQQSNFTLQGFSMLPALADEVKVPEKDIPRGMSNAVLLSAFSGIVFLIPIMIILPESDKLFTNHKILP--IVNIFTQSTHSMFVSFFLL 351
                  9999***********************************************************************55..******************* PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaP.....kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliils 386
                  ++il+++++s+++s++++sR++ys+++d ++P     ++++  s+++vP ++illsm+is+++ lla +++a         a++a+ig +v++l++++
   CCD22247.1 352 LMILGNLFFSGIGSITTSSRAVYSFSRDHAIPhhetwTFVQPESQSKVPKNSILLSMAISYILGLLALFSTA---------AFNAFIGAAVLCLCSAT 440
                  ************************************************************************.........***************** PP

  AA_permease 387 ylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                   +++   l+ ++r ++ +++k+++   ++++++ +l+++l +++++++ +++ + +++++a  +++ +i++++l++++++k+++k+++
   CCD22247.1 441 CIPLVLVLFRRRRVLRNAPVKIRYKLGWFVNIVSILWLLLSMVSVCLPPKIPVTLESMNYALIVYLLCIIIITLMYFKWGKDNFKLPL 528
                  ************************************************************************************9876 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1  46.8   1.9e-42   1.2e-38       7     423 ..      63     506 ..      56     512 .. 0.80

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 1.9e-42
  AA_permease_2   7 falvigsv...igsgifvkn......laasggpalilwvwiavligslavllvyaEl.ssalprsgGiyvytkaafgkkvaflsawfnwfayvpvl 92 
                    ++l ++++   +g             ++ +ggpa+i+w++++++i+++ ++l + E+ s  +p +  + v ++ + +kk++ +++w++ +  ++++
     CCD22247.1  63 VGLGFSLMsapLG------MstsmaiGLINGGPATIIWGFLISGICIWFCSLSLGEVvSK-FPME--LHVSSAMLAPKKLKLICSWYTGWLMLLGN 149
                    4444444432233......02234446779***************************666.8887..566777778*****999999988888888 PP

  AA_permease_2  93 asil.svaasyllnalgpdlqgn......tw...ltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl..s 176
                     +++ s+ ++  +  ++  l +n      ++   +t++i+ +++++v lin++  + + +i+  ++i+ i   ++++ il li+ +g+++s +   
     CCD22247.1 150 WTMStSITFAGAQLTISLILMTNsdliseKYligFTVIIFYLVVTIVGLINLKFARFIETINRACVIWII-YAILFIDILLLIFHRGKYHSLKysL 244
                    77642555555555555433333444444443449999999999**************************.69999999999999999*9988886 PP

  AA_permease_2 177 tetdtffpngwpg...vllgllivlwsfdGfesaanvsee..vkkkdvpkaifigllivlvlyllvniaflgvvpd.deianlsnlgsvaalffea 266
                    ++ d+++++ + +   +l g+ ++ ++++Gf++    ++e  v++kd+p+++ +++l+++++++++ i +++++p  d++ +++ ++ ++ +f + 
     CCD22247.1 245 FHFDNSLSGYSGFlisFLIGFQQSNFTLQGFSMLPALADEvkVPEKDIPRGMSNAVLLSAFSGIVFLIPIMIILPEsDKLFTNHKILPIVNIFTQS 340
                    66667777755543346889999*****************66667*******************************5556455667779******* PP

  AA_permease_2 267 vggkvvaiivvilialsllgaintavigssrvlealardgvlP..rffakvn.k..fgspiraiiltaivslillllfllassaaynfllsvsslg 357
                    +++ +v+ ++ ++i   l++++++ +++ssr +++++rd ++P  + +  v+ +   + p ++i l++ +s il+ll l++ +aa+n+   +++l+
     CCD22247.1 341 THSMFVSFFLLLMILGNLFFSGIGSITTSSRAVYSFSRDHAIPhhETWTFVQpEsqSKVPKNSILLSMAISYILGLLALFS-TAAFNAFIGAAVLC 435
                    **889999999999999****************************66666653322777****************999996.8************* PP

  AA_permease_2 358 liisyllliigalilrkkrphl....kr.pgkilvaiigalfllfllvalffppkgpatqssliytiiltv 423
                    l++  +++++++l+ r++  +      r +  + v+i+++l+ll+ +v  ++ppk p+t +s++y++i+++
     CCD22247.1 436 LCSATCIPLVLVLFRRRRVLRNapvkIRyKLGWFVNIVSILWLLLSMVSVCLPPKIPVTLESMNYALIVYL 506
                    *********99999998844332221444334**********************************55544 PP

>> DUF1129  Protein of unknown function (DUF1129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   5.2      0.18   1.1e+03     122     202 ..     158     238 ..     146     240 .. 0.71
   2 !    4.8   0.4    0.0029        17     111     171 ..     294     355 ..     265     366 .. 0.75
   3 !   15.9   2.9   1.2e-06     0.007      83     192 ..     401     509 ..     367     523 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.18
     DUF1129 122 vgGlamvlvyrlltrekkkkkrpplwkrllilllllvvwlvlftlvallpaviNpvLpplvliiigviafvvryylkkkyn 202
                  +G+ +++   l+t+++  +++  +  +++i  l++ +  ++ + +a + ++iN+    ++  +i  i + + ++ + ky+
  CCD22247.1 158 FAGAQLTISLILMTNSDLISEKYLIGFTVIIFYLVVTIVGLINLKFARFIETINRACVIWIIYAILFIDILLLIFHRGKYH 238
                 467777777777777655666665555555555555444455555555999999999999999999999999999999997 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0029
     DUF1129 111 iGlitlllvalvgGlamvlvyrlltre.kkkkkrpplwkrllilllllvvwlvlftlvallp 171
                  G+   +l+++ +G+++++   ++ +e +k     +++ ++ i + ++ +++v f+l+ ++ 
  CCD22247.1 294 RGMSNAVLLSAFSGIVFLIPIMIILPEsDKLFTNHKILPIVNIFTQSTHSMFVSFFLLLMIL 355
                 699999********************964445667777777777777777777777777754 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 1.2e-06
     DUF1129  83 DnsLlllalfallfgilalfskkkqtasiGlitlllvalvg.Glamvlvy.rlltrekkkkkrpplwkrllilllllvvwlvlftlvallpaviNpvLp 179
                  ns ll + ++ + g+lalfs+++ +a iG  +l l++++   l++vl+  r + r+++ k r    k  +++ ++ ++wl+l ++   lp++i ++L+
  CCD22247.1 401 KNSILLSMAISYILGLLALFSTAAFNAFIGAAVLCLCSATCiPLVLVLFRrRRVLRNAPVKIRY---KLGWFVNIVSILWLLLSMVSVCLPPKIPVTLE 496
                 589999999*************888888888877777665314444443313444445555554...4456777888899999999999********** PP

     DUF1129 180 plvliiigviafv 192
                 ++ +++i  +  +
  CCD22247.1 497 SMNYALIVYLLCI 509
                 *999877544332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1241  (0.0692175); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 4579.94
//
Query:       CCD22248.1  [L=997]
Description: hypothetical protein NDAI_0A00900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.4e-39  133.0   0.0    1.4e-38  132.4   0.0    1.3  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    3.9e-17   62.1   0.0    8.8e-17   60.9   0.0    1.6  1  EFG_C        Elongation factor G C-terminus
    1.4e-14   54.7   5.6    1.4e-14   54.7   5.6    1.8  2  EFTUD2       116 kDa U5 small nuclear ribonucleoprotein compo
    1.2e-12   47.7   0.0    2.5e-12   46.6   0.0    1.5  1  EFG_IV       Elongation factor G, domain IV
    4.5e-08   33.4   0.0    1.2e-07   32.0   0.0    1.8  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    4.8e-07   29.9   0.1    2.6e-06   27.5   0.0    2.3  2  MMR_HSR1     50S ribosome-binding GTPase
     0.0029   17.6   0.0      0.013   15.5   0.0    2.0  2  EFG_II       Elongation Factor G, domain II
  ------ inclusion threshold ------
      0.015   15.3   0.1        4.8    7.2   0.0    2.6  2  Dynamin_N    Dynamin family
      0.054   13.1   0.1       0.23   11.0   0.0    2.0  2  Ras          Ras family
       0.12   12.6   0.0         29    4.9   0.0    2.6  2  Roc          Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.0     8e-42   1.4e-38       2     182 ..     135     328 ..     134     445 .. 0.84

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 8e-42
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH.......HHHSTHCHSHHHHHHTSCSSCEEEEEE..T.TCSSEEEEEEEESSSGGGHHHHHHH CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgeka.......eeervlDtlkeErergiTiksaaisle..k.etkkylinliDtPGHvdFskevirg 90 
                 rirn++iig +++GKt+L+d L+ ++++  k    +       ++ r++D+lk+E ergi+ik + i++   + ++k+  +nl+D+PGH +F++e+  +
  CCD22248.1 135 RIRNVAIIGPLHSGKTSLVDLLVIESHQPGKLPHLTrnmalgwKQLRYMDNLKQEIERGISIKLNGITILrqDlKGKSIALNLVDSPGHLNFMDETAVS 233
                 89************************9998866655455665555666*********************976269************************ PP

                 HHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT...TTEEEEEEBTTTTBTHH CS
    GTP_EFTU  91 lrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekge...kevpvvfgSalkgegvk 182
                 l+++D+a++ +d+veGv++ te+++++++++g+++ +++NK+Drl+ elk  + + + k+++  +++++++   +   +  +v+f+S + g+ ++
  CCD22248.1 234 LAACDVAIICLDIVEGVTSITEQLIKQCQRRGLKMLFVLNKLDRLILELKLAPFDTYLKMKHIVQEINSFTHGVRfspELGNVIFASTKLGFTFT 328
                 *********************************************88888888888888877766666665554466678899999999998766 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   4.9e-20   8.8e-17       1      87 [.     846     936 ..     846     938 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 4.9e-20
                 EEEEEEEEEEEEEECCCCCCHHHHHHHCT-.EEEEEEEE..TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEE..EEEEE--HHHHH CS
       EFG_C   1 vllEPivkveievpeeyvgkvisdlssrrG.eiedmeqd.asgrviieaeiPlaeligfateLrslTkGegsfsmef..sgYeevpgdkld 87 
                 +l+EPi++v+i+v++ ++  + +++++rrG +i ++e + +s    i+++iP+ +++gf+t+Lr +T+G+++++++f  + ++ vpgd++d
  CCD22248.1 846 ILMEPIYEVDIIVENILQPIIEELFQKRRGsKIYKVERIvGSPLLEIKGQIPVIDSVGFETDLRLATNGRAMCQLHFwnKIWRRVPGDVMD 936
                 59***********99988888888888***89999999999***********************************************987 PP

>> EFTUD2  116 kDa U5 small nuclear ribonucleoprotein component N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   5.6   7.9e-18   1.4e-14       2     113 ..       4     101 ..       3     109 .. 0.69
   2 ?   -3.3   0.2       7.2   1.3e+04       9      27 ..     530     548 ..     527     556 .. 0.57

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 7.9e-18
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXX----TTT---S--TTTTT-SSSEEEE--S-SS- CS
      EFTUD2   2 dlYDEFGNyiGpelesdeeeeseeeeeeeeeeeeeeeeeeeaekaeedeelkdeeeeeeaeeeesnavvlhedkkyypsaeevYGkdvetlvqeeDaqp 100
                 +l+DEFGN iG++  +++ e++++  +  e+++++e+       +e+d++++ e +ee     +sna++  +d     + +e YG+dve+lv+ e++q+
  CCD22248.1   4 ELFDEFGNIIGQDPFDSDAEDNSSILSGPEDDDKAES-------IEQDNSAEGEYHEERP---SSNALITTDDN----HIQELYGDDVEILVETENTQS 88 
                 89*********98765544333333333333322222.......3334433444444433...599***99996....5799***************** PP

                 TTS-SS------- CS
      EFTUD2 101 lsePiiaPvkekk 113
                  +ePii+P+++++
  CCD22248.1  89 FNEPIIKPMESRS 101
                 *********9876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.2
                 XXXXXXXXXXXXXXXXXXX CS
      EFTUD2   9 NyiGpelesdeeeeseeee 27 
                 N  G+ +++d++++++ ++
  CCD22248.1 530 NLTGSADDDDKNSSNQFQS 548
                 6667666666554444444 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.4e-15   2.5e-12      12     120 ..     738     843 ..     730     844 .. 0.89

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 1.4e-15
                 -CCHCCCCCCCHTSSSHCCCCCEEEECCTTTTSSEEEEE--S....TCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE--TTTC-HHHHH CS
      EFG_IV  12 pvkereeklkkqsggdgqyakvileiePleegsgnefvdetk....ggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslhevdsseaafk 106
                 ++k+ +++l +++g+d  +a+ ++++       g +++d+t     ++  +++ ++++++Gf +a+keGpla+e++ +v+++Ll ++   +   + +++
  CCD22248.1 738 DSKKLSKRLREEYGWDSLAARNVWTFHN-----GTVLIDDTLpdetDKDELESLKKYIKQGFYWAMKEGPLAEENIFGVQFKLLSVEG--KCENKNQII 829
                 456699**********************.....7799999987777888999*******************************98864..6678899** PP

                 HHHCHHHHHHHHCC CS
      EFG_IV 107 paarralkeallkA 120
                 p+ r+a++ all+A
  CCD22248.1 830 PLIRKACYVALLTA 843
                 **********9998 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   6.5e-11   1.2e-07       2      74 .]     504     592 ..     503     592 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 6.5e-11
                  EEEEEEEEESEEETTEEEEEECTCTTSEE......................EEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   2 tvalgrvysGtlkkGdevrilgndtskke......................ivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  +++l+rvy G+lk+G+ + i   d    +                       +++++ +    ++++ +v++a++G+iv++kg++++  +++tl+
   CCD22248.1 504 EWTLVRVYKGVLKVGMSLQI--ID----PelnnltgsaddddknssnqfqsSLHEVTEITWLCGRYKYEVKEAYKGQIVLVKGISESFTKSATLY 592
                  69******************..76....4466789999*******************************************************97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.4e-09   2.6e-06       1     114 []     138     274 ..     138     274 .. 0.84
   2 ?   -2.0   0.0       2.1   3.8e+03      34      86 ..     482     527 ..     477     555 .. 0.66

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.4e-09
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE....ETTEE..............................EEEEECGGCSSHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk....lkgke..............................ielvDtpGliegaseekg 65 
                 +vai+G   +GK++L+  l+ e  + ++ p  Tr++  g +k    +   +                              ++lvD pG ++       
  CCD22248.1 138 NVAIIGPLHSGKTSLVDLLVIESHQPGKLPHLTRNMALG-WKqlryM---DnlkqeiergisiklngitilrqdlkgksiaLNLVDSPGHLN------F 226
                 59**********************************999.5433331...1345567788888888888888888899999********665......5 PP

                 HHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  66 lgkaflaleeadlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                 + ++  +l  +d++++++d+  e+++ + e+l +  ++++ ++++vlnk
  CCD22248.1 227 MDETAVSLAACDVAIICLDIV-EGVTSITEQLIKQCQRRGLKMLFVLNK 274
                 67777777889********99.77****99999999999999*****98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.1
                 SSE.EEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT CS
    MMR_HSR1  34 rdi.negrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas 86 
                 ++i ne ++   g+ ++ +D  G  +    e+ l + ++ + ++ + l ++d +
  CCD22248.1 482 KNItNESTFW--GHALKTLDYGG--S----EWTLVRVYKGVLKVGMSLQIIDPE 527
                 5552333332..56788889999..4....699999999999999999999944 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   7.5e-06     0.013       3      67 ..     611     674 ..     610     681 .. 0.92
   2 ?   -2.5   0.0       3.2   5.7e+03       5      26 ..     726     747 ..     725     750 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.5e-06
      EFG_II   3 ePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkrey 67 
                 +P++++a++    ++  kl + L+++++  p  +v++ ee++e+++ G Gel ++ ++  l++ y
  CCD22248.1 611 PPIFKVALQSLLPKELPKLLDGLDKIVRYYPGCTVKV-EESGEQMILGTGELYMDCLLYDLRNVY 674
                 799********************************99.588999999***********9999877 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.2
      EFG_II   5 vislaiepkskadedklskaLa 26 
                 v+   i+ ++ +d++klsk L+
  CCD22248.1 726 VVRQKISDNDLNDSKKLSKRLR 747
                 5667788889999****99986 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0071        13       1      34 [.     139     172 ..     139     175 .. 0.87
   2 ?    7.2   0.0    0.0027       4.8      61     167 ..     179     274 ..     170     275 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0071
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrr 34 
                 +a++G   sGK+S+++ L+ e   p +  + Tr+
  CCD22248.1 139 VAIIGPLHSGKTSLVDLLVIESHQPGKLPHLTRN 172
                 79*****************999888877777776 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0027
                 EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBT CS
   Dynamin_N  61 kledfsevreeieketekiagankgiskkvillkilsllvkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsnsealflarevdpkgk 159
                 +l+ ++++++eie+  + +    +gi    il ++l+ +   l+lvD+PG  +  ++  ++   +++ a i l +++  ++++    ++l ++++ +g 
  CCD22248.1 179 QLRYMDNLKQEIERGISIKL---NGI---TILRQDLKGKSIALNLVDSPGHLNFMDET-AVSLAACDVAIICLDIVEGVTSIT----EQLIKQCQRRGL 266
                 55556666666666666555...333...677777777888899******99866665.676666666666666666655555....99********** PP

                 TEEEEEE- CS
   Dynamin_N 160 rtivvltk 167
                 ++++vl+k
  CCD22248.1 267 KMLFVLNK 274
                 ******99 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.92   1.6e+03       2      17 ..     139     154 ..     138     164 .. 0.83
   2 ?   11.0   0.0   0.00013      0.23      40     115 ..     205     276 ..     181     301 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.92
                 EEEEESTTSSHHHHHH CS
         Ras   2 lvlvGdsavGKtslll 17 
                 + ++G  + GKtsl+ 
  CCD22248.1 139 VAIIGPLHSGKTSLVD 154
                 679***********86 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00013
                 EEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST.TTSEEEEEEETTT CS
         Ras  40 eievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvae.envpivLvGnKvD 115
                 + +++gk++ l++ D  G  +f   +  ++  +++++++ di +      v++++e++ ++++ + ++++ v nK D
  CCD22248.1 205 RQDLKGKSIALNLVDSPGHLNFMDETAVSLAACDVAIICLDIVE-----GVTSITEQLIKQCQrRGLKMLFVLNKLD 276
                 456789************************************85.....6888999999999988899999999999 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.017        31       2      26 ..     139     163 ..     138     180 .. 0.83
   2 ?    4.9   0.0     0.016        29      32     119 ..     192     276 ..     177     277 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.017
                 EEEESSTTSSHHHHHHCHCT-CCC- CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfse 26 
                 v ++G  ++GKtsl++ +v ++ ++
  CCD22248.1 139 VAIIGPLHSGKTSLVDLLVIESHQP 163
                 789************9888776665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.016
                 TTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE..GHHHHCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  32 igvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd..srssenlkeWlkelkkvagkspvilvgnkiD 119
                  g++++ + +   + +++d k k++ ln+ D  G+ +f   + + l + ++ai+++d  +   +  ++ +k++++++   ++++v nk+D
  CCD22248.1 192 RGISIKLNGI---TILRQDLKGKSIALNLVDSPGHLNFMDETAVSLAACDVAIICLDivEGVTSITEQLIKQCQRRG--LKMLFVLNKLD 276
                 4555554444...33456778899*********************************53223444566666666554..46889999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (997 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6857.06
//
Query:       CCD22249.1  [L=351]
Description: hypothetical protein NDAI_0A00910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-95  317.8   0.1    4.6e-95  317.5   0.1    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.5   0.1   2.6e-99   4.6e-95       2     254 ..      36     302 ..      35     304 .. 0.94

  Alignments for each domain:
  == domain 1  score: 317.5 bits;  conditional E-value: 2.6e-99
                      HHHHHHHHHHHHSSS--HHHHHHHHHHHHHSCG.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHC..TCHHHHHHH CS
  polyprenyl_synt   2 elleealeylveagGKrlRpllvllaaealkee.......eeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrl..vGnklAind 86 
                      +++e +l  ++ +gGK +R+l+v++++ +lk +       +ee++k+a+l+w++ell+a++Lv+DD+mD+s+tRRGqpc++r+  vG++ Aind
       CCD22249.1  36 QWYESSLFFNT-PGGKLNRGLSVVDTYVILKGYksfsdmaKEEYKKVAILGWCIELLQAYFLVADDMMDKSITRRGQPCWYRVkgVGEI-AIND 127
                      78999999999.*******************444577777589****************************************889999.**** PP

                      HHHHHHHHHHHHHHHH..STT.HHHHHHHHHHHHHHHHHHHHHH...HHTTTTTCCC.SHHHHHHHHHHHTH.HHCHHHHHHHHHHTTHHH.HH CS
  polyprenyl_synt  87 gdfllarafellaklf..eks.lellelfsevllqtveGqlldl...eeekdddlskfsleeyleivkyKTa.ylfalpvalaallagasd.ee 172
                      +++l+a++++ll+++f  e++ ++l+elf++v++qt+ Gqlldl   + e+++dl+kfs+++ + iv+ KTa y+f+lpvala+++ag+++ ++
       CCD22249.1 128 AFMLEAAIYILLKNHFrsESYyVDLIELFHDVTFQTELGQLLDLitaP-EDKVDLNKFSMNKQSFIVRFKTAyYSFYLPVALAMYMAGINSdTD 220
                      ****************986668*********************98844.458************************************987578 PP

                      HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTT.SSHHHHHHHHHHHH CS
  polyprenyl_synt 173 lealkdiglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilg.kkaekeedvkeale 254
                      l++++d++ +lG++FQiqDD+lD+fg+pe++gK+ gtDiq++kc+++i+kalel +peqrkvl+e++g k++e+e++ +e+++
       CCD22249.1 221 LQQAQDVLIPLGEYFQIQDDFLDCFGTPEQIGKI-GTDIQDNKCSWVINKALELVTPEQRKVLDENYGqKNQECEDKCREVFN 302
                      8*********************************.*********************************888999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2515.79
//
Query:       CCD22250.1  [L=942]
Description: hypothetical protein NDAI_0A00920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-40  137.4   0.0      1e-22   80.8   0.0    2.6  2  Pkinase      Protein kinase domain
    2.9e-21   75.9   0.0    1.7e-14   53.8   0.0    2.6  2  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   1.2e-26     1e-22       5     152 ..     487     647 ..     484     656 .. 0.86
   2 !   53.7   0.0   2.1e-18   1.9e-14     153     258 ..     811     926 ..     793     932 .. 0.78

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 1.2e-26
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH.......HHSS- CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladlle.......rkgsl 95 
                 + +G G+ G+V ++++ +tg   A+K+++ +++ k k+ +v+rE+++ ++lkh+ i+ l+++  + +  +y ++e +  g+++dl+         + ++
  CCD22250.1 487 RIIGYGAWGVVRECIDLKTGINRAIKIVRFKENLKVKR-EVIREVSVWEQLKHQCILPLLNYNLDpEYAMYCLTERITDGNFFDLVLswgtldnPNINF 584
                 78*******************************99996.9*********************9998455688999**********998677776544444 PP

                 -HH..HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSC CS
     Pkinase  96 see..eakkiakqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelesss 152
                 +++   + + + q++++l+y+Hsk++ H D+K eN L+++  +    + ++DFG+++ ++s+ 
  CCD22250.1 585 TDRckLTIFSVLQVISALNYMHSKSFAHGDVKLENCLVQKVPKeywkVFLCDFGMSRSFRSNM 647
                 443444558899***************************6444578899********998865 PP

  == domain 2  score: 53.7 bits;  conditional E-value: 2.1e-18
                 S....BCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.....SHH...HHHTTS-HHHHHH CS
     Pkinase 153 k....ltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.....etkeklpeaseiseeakdl 240
                 +    l+s +g+  Y +PE+l  + ++ ++++DvW+lGv+ly++ltgk pf++ + +e+ ++ ++++    + l+      +k ++++++ i +++ d 
  CCD22250.1 811 ElrsdLSSHIGSLPYASPELLhsDCTSLGPPADVWALGVMLYTMLTGKLPFKD-EFEERLRERIRNVNYDKEALQiacnnGEKPNIKQQELIFQTLYDA 908
                 244458999************7666888************************4.44455666666643333333345456668888899999******* PP

                 HHHHT-SSGCCSTTHHHH CS
     Pkinase 241 lkkllkkdpkkRltaeel 258
                 ++ +l+kd  kR+t  ++
  CCD22250.1 909 VDGCLTKDLDKRWTLIDV 926
                 *************97555 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   1.9e-18   1.7e-14       4     156 ..     486     646 ..     484     658 .. 0.84
   2 !   19.4   0.0   5.7e-08   0.00052     144     257 ..     797     928 ..     790     930 .. 0.68

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 1.9e-18
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHT...CT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkk...ek 97 
                  g+ +G Ga+G V e+       k+ ++ a+K+++ + + + k+e+++e+++ ++lkh+ i+ ll   +  e  ++ +te ++ G++ + + +    ++
   CCD22250.1 486 GRIIGYGAWGVVRECIDL----KTGINRAIKIVRFKENLKVKREVIREVSVWEQLKHQCILPLLNYNLdPEYAMYCLTERITDGNFFDLVLSWgtlDN 579
                  788************988....899********99999999**************************95556699*********98887776666677 PP

                  TTSBHHHHHHHH....HHHHHHHHHHHHTTEEEST-SGGGEEEEE....TTEEEE-STTTHEETTTS CS
  Pkinase_Tyr  98 ekltlkdllsfa....lqvAkGmeyLeskklvHrdlaarNvLlse....nkvvkisDfGLardiekd 156
                  ++++++d ++++    lqv ++++y++sk++ H d+   N+L+++      +v ++DfG++r+  ++
   CCD22250.1 580 PNINFTDRCKLTifsvLQVISALNYMHSKSFAHGDVKLENCLVQKvpkeYWKVFLCDFGMSRSFRSN 646
                  88888887765422227***************************97754458889*******99333 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 5.7e-08
                  E-STTTHEETTTSSEEEET.TSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHTTSSGT............TTTS.HHHHHHHHH.HTTEE. CS
  Pkinase_Tyr 144 isDfGLardiekddeyvkk.eeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlgesp............ypgl.kneevlekl.kegkr. 223
                  i D  +a    +++e +++ +++  ++ + +pE l++    +   +DvW+ Gv+l+ ++t g+ p            ++++  ++e+l+   ++g++ 
   CCD22250.1 797 IRDTSMATIDPQKEELRSDlSSHIGSLPYASPELLHSDCtsLGPPADVWALGVMLYTMLT-GKLPfkdefeerlrerIRNVnYDKEALQIAcNNGEKp 893
                  5566666655455555444155567899*******99983344579**************.****777777777777333322222333332444433 PP

                  .S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 224 .lekpekcpeelyelmkkcweedpeeRptfselve 257
                   +++ e + ++ly+ +  c+++d ++R t+ ++++
   CCD22250.1 894 nIKQQELIFQTLYDAVDGCLTKDLDKRWTLIDVQS 928
                  37778888899999999999999999988877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (942 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1372  (0.0765241); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 6079.47
//
Query:       CCD22251.1  [L=138]
Description: hypothetical protein NDAI_0A00930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-41  139.6   2.0    5.9e-41  139.4   2.0    1.0  1  Ribosomal_L14    Ribosomal protein L14p/L23e
  ------ inclusion threshold ------
       0.18   10.9   0.0       0.23   10.5   0.0    1.1  1  Glyco_transf_56  4-alpha-L-fucosyltransferase glycosyl transf


Domain annotation for each model (and alignments):
>> Ribosomal_L14  Ribosomal protein L14p/L23e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.4   2.0   6.5e-45   5.9e-41       1     122 []       1     138 []       1     138 [] 0.93

  Alignments for each domain:
  == domain 1  score: 139.4 bits;  conditional E-value: 6.5e-45
                    ..CSS-EEE--SSSSBSEEEEEEETT-.--.-EE-SSSEEEEEESSS-T.............TTSSCEEEEEEEE-SS.-EE-TTS-EEEESS-EE CS
  Ribosomal_L14   1 miqlktrlkvaDNsgakevecikvlggkkr.kaasvGdiivvsvkkakp..........kgkvkkgdvvkavvvrtkk.evrrkdGsvirfddnaa 84 
                    mi lk++lkv+DNsga+ +ecik+l++++  +a+ +Gd+iv++++kakp          +++vkkgd+v+av+vrtk+ ++ r+dGs + f dna+
     CCD22251.1   1 MIYLKSMLKVIDNSGAQLAECIKILRKGSPkTAGLIGDRIVCVIQKAKPltqnvtgtsnTNRVKKGDIVHAVIVRTKQkNMARTDGSAVAFGDNAC 96 
                    9************************99977255569**********************999***************98789*************** PP

                    EEB-TT.S-BSS-.B...-SBEEHHHHHH.-HHHHHTBSBE. CS
  Ribosomal_L14  85 Vllnkk.geplGtri...fgpvarelrekkflkivslApevl 122
                    Vl+nk+ geplGtri    g v +elrek +++i+slA++v+
     CCD22251.1  97 VLINKNtGEPLGTRImnnDGLVGKELREKGYNRICSLASRVI 138
                    ***98759*******55559*******************996 PP

>> Glyco_transf_56  4-alpha-L-fucosyltransferase glycosyl transferase group 56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.6e-05      0.23     285     341 ..      35      92 ..      26      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.6e-05
  Glyco_transf_56 285 liqagiPlvlsrknpflqdlqeq.qvpvlfaedeldeaavreakrqlasvdkekiaff 341
                      li   i +v++++ p++q+++   +   + ++d +++ +vr+ ++++a +d +++af 
       CCD22251.1  35 LIGDRIVCVIQKAKPLTQNVTGTsNTNRVKKGDIVHAVIVRTKQKNMARTDGSAVAFG 92 
                      788899**************9651677788999999999*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1059.73
//
Query:       CCD22252.1  [L=696]
Description: hypothetical protein NDAI_0A00940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-43  147.2   1.7    9.1e-42  143.2   1.7    2.2  1  Pkinase      Protein kinase domain
    6.3e-20   71.5   0.0    1.3e-19   70.5   0.0    1.5  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
       0.14   11.5   1.0       0.23   10.8   0.2    1.7  2  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
        0.2   11.6   0.1       0.33   10.8   0.1    1.3  1  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   1.7     2e-45   9.1e-42       6     264 .]     388     684 ..     384     684 .. 0.78

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 2e-45
                 EEEEESSEEEEEEEE................TTTTEEEEEEEEECHCHCHHHH..HHHHHHHHH......HHHHS..CTTB--EEEEEEESSEEEEEEE CS
     Pkinase   6 klGeGsfGkVykave................ketgkivAvKkikkekakkkke..kkvlrEiki......lkklk..hpnivrlyevfeekdelylvle 78 
                  +G+Gs+G+V  +++                ++++  +A K++k +++++ ++  +++++E  i      ++++k  hpni+++++ +e+ d+++ v+e
  CCD22252.1 388 DIGQGSYGTVKVCCRlkkpnekllspnvtysDDSKVFFAAKELKAKSTSNIDKiaTNITSEFIIgyslsyHENSKlsHPNILKILDLMESRDSFIEVME 486
                 57777777776665411111111111111113456679******999999998999999996542222225555566********************** PP

                 --TTEBHHHHHH....HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHH CS
     Pkinase  79 yveggeladlle....rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEv 168
                 ++++g+l +l++    +++sl + ea  +++q+l+g +++H++gi H+DlKpeNiL++++g lKi+DFG  + +++  +      +  +g++ Y+APE 
  CCD22252.1 487 FCPCGDLYTLVSnhskKHTSLHPLEADCFMRQLLSGTNFMHRHGIAHCDLKPENILFHSNGLLKICDFGTGSVFQTAWEkhvhyQKGLIGSEPYVAPEE 585
                 *******99999888777789999**********************************************9999887777888778899********98 PP

                 H.TTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHH.HHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 169 l.keney.skkvDvWslGvilyelltgkppfsgekgkek.vekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 l k+ ey  + vD Ws+Gv+  +++ g+ +++  +++e+ +++++ + +++ k ++  +   + ++e+++  k  l +++++dp+kR  ++++l++ ++
  CCD22252.1 586 LvKDLEYdPRLVDSWSCGVVYCTMILGHYLWKIPNKEEDlFYQDFVEEMSTKKRFTVFEDLKHVNKELNRLRKITLYRIFQRDPEKRANVQDVLDSAWM 684
                 8899***6678********************96655443145555554444555545555666666667777777999******************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0     3e-23   1.3e-19       7     255 ..     389     678 ..     384     681 .. 0.64

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 3e-23
                  EEEESSEEEEEEEEET............TTTSSEEEEEEEEESTTSSHHH...HHHHHHHHHH........HHTS-BTTB--EEEEEESSSSEEEEEE CS
  Pkinase_Tyr   7 lGeGafGkVvegtlkg............ekekkevkVavKtlkeeateee...keelleeaki........mkklkhpnivkllgvctkeepllivte 81 
                  +G+G++G+V  +   +             +++++v  a K lk+++t++     +++++e  i         +kl+hpni+k+l ++ ++++ + v+e
   CCD22252.1 389 IGQGSYGTVKVCCRLKkpnekllspnvtYSDDSKVFFAAKELKAKSTSNIdkiATNITSEFIIgyslsyheNSKLSHPNILKILDLMESRDSFIEVME 486
                  6666666665544333366666666655555556666666666555444212223333343221111111136889********************** PP

                  --TTEBHHHHHHHTCTTTSBHH..HHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE..EETTSSTSGGGGS-HH CS
  Pkinase_Tyr  82 yvkgGdLlkfLrkkekekltlk..dllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey..vkkeeaklpvkWmapE 175
                  +++ GdL + + +++k++++l+  +  +f+ q+ +G ++++++ + H dl   N+L ++n + ki+DfG  +  ++  e   + +++   +  ++apE
   CCD22252.1 487 FCPCGDLYTLVSNHSKKHTSLHplEADCFMRQLLSGTNFMHRHGIAHCDLKPENILFHSNGLLKICDFGTGSVFQTAWEKhvHYQKGLIGSEPYVAPE 584
                  ***********99976666555115678*****************************************988775443332266667778899****8 PP

                  HH.HHSEEE.HHHHHHHHHHHHHHHHTTSSGT...........TTTSHHHHHHHHHHTTEE...S-BBTTSBHHHHHH....HHHHT-SSGGGS--HH CS
  Pkinase_Tyr 176 sl.kekkft.sksDvWsfGvllwEiftlgesp...........ypglkneevleklkegkr...lekpekcpeelyel....mkkcweedpeeRptfs 253
                   l k+ ++     D Ws Gv+   ++  g+             y     ++++e ++++kr    e  +++++el++l    + + +++dpe+R++ +
   CCD22252.1 585 ELvKDLEYDpRLVDSWSCGVVYCTMIL-GHYLwkipnkeedlfY-----QDFVEEMSTKKRftvFEDLKHVNKELNRLrkitLYRIFQRDPEKRANVQ 676
                  7615666872569*******9887775.5544233344333332.....3344444444442222233334444433322256778888888888877 PP

                  HH CS
  Pkinase_Tyr 254 el 255
                  ++
   CCD22252.1 677 DV 678
                  66 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   5.1e-05      0.23     134     155 ..     526     547 ..     492     566 .. 0.88
   2 ?   -2.4   0.0      0.57   2.5e+03      14      45 ..     635     666 ..     628     671 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.1e-05
         Kdo 134 lhragvnHadlyaknillqqee 155
                 +hr g+ H dl + nil++ ++
  CCD22252.1 526 MHRHGIAHCDLKPENILFHSNG 547
                 *******************987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.57
         Kdo  14 aegRrttwfvvaekvnaalrkyyrggllgkls 45 
                 ++++r t+f++ ++vn +l ++++ +l   + 
  CCD22252.1 635 STKKRFTVFEDLKHVNKELNRLRKITLYRIFQ 666
                 34578889999999888888887655555555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   7.5e-05      0.33     163     194 ..     526     555 ..     493     559 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.5e-05
                 SS-EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 163 elptvllHgDlhpgNllvdpddgrvtGviDfe 194
                   ++++ H+Dl+p N+l++  +g +  + Df+
  CCD22252.1 526 MHRHGIAHCDLKPENILFH-SNGLL-KICDFG 555
                 56899**************.44443.577776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4466.87
//
Query:       CCD22253.1  [L=136]
Description: hypothetical protein NDAI_0A00950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-14   51.8   0.1      1e-13   51.0   0.1    1.5  1  L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI


Domain annotation for each model (and alignments):
>> L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.1   5.6e-18     1e-13       1      51 [.      48     106 ..      48     107 .. 0.95

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 5.6e-18
                    HHHHHTTTTHHHHTT-TTSEEEEEE.SS-SS.....-EEEEE-SS-..-B--EE-SS-- CS
  L51_S25_CI-B8   1 aRkFwrknLprlkykNPavpivvrr.rsgdg.....PallaiYfng..rektidlknkn 51 
                    aRkFw+++Lp+lk++NP ++++v r +++d+     P++l+i + +  +  +id++nk 
     CCD22253.1  48 ARKFWHEYLPTLKFYNPNLKFDVIRiSNPDKrkrdiPCTLEILGKEdqVLGSIDMRNKQ 106
                    8*************************99999***************888889*****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1000.34
//
Query:       CCD22254.1  [L=408]
Description: hypothetical protein NDAI_0A00960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-71  240.9   0.0    2.4e-71  240.2   0.0    1.3  1  Pkinase        Protein kinase domain
      2e-40  138.7   0.0    2.9e-40  138.2   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
    3.5e-05   23.2   0.0    5.5e-05   22.6   0.0    1.4  1  Kinase-like    Kinase-like
  ------ inclusion threshold ------
      0.028   13.4   0.2      0.041   12.8   0.2    1.4  1  Haspin_kinase  Haspin like kinase domain
      0.098   12.6   0.0       0.17   11.8   0.0    1.4  1  APH            Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.2   0.0   6.6e-75   2.4e-71       1     264 []      98     352 ..      98     352 .. 0.94

  Alignments for each domain:
  == domain 1  score: 240.2 bits;  conditional E-value: 6.6e-75
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 ++ +++lG+GsfG+V  +++ ++g+ +A+K+ikk+     k+ +++  E ++l  ++hp++vr++++f+++++++++++y+eggel++ll+r++++++ 
  CCD22254.1  98 FQIMRTLGTGSFGRVHLVRSIHNGRFYALKVIKKNTVVRLKQiEHTNDERRMLSVVNHPFLVRMWGTFQDSEQIFMIMDYIEGGELFSLLRRSQKFPNP 196
                 57889*********************************99999******************************************************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                  ak++a++++ +leylHs  ii+rDlKpeNiL+d++g++KitDFG+ak +   +   + +gt++Y+APEv+++++y k+vD+Ws G+++ye+l+g++pf
  CCD22254.1 197 VAKFYAAEVCLALEYLHSLDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT--YTLCGTPDYIAPEVVSSKPYNKSVDWWSFGILIYEMLSGRTPF 293
                 ************************************************999965..99***************************************** PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.....HHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.....aeellqhpyl 264
                 +++++ +++e++l                l  +s + e+++dll++l+++d +kRl+      e++++h ++
  CCD22254.1 294 YDRSTIKTYENILSA-------------PLTFPSYLHEDVQDLLNRLITRDLSKRLGnlqngSEDVKNHAWF 352
                 *55554444444444.............68899************************999999999999998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   0.0   8.2e-44   2.9e-40       2     249 ..      99     335 ..      98     339 .. 0.89

  Alignments for each domain:
  == domain 1  score: 138.2 bits;  conditional E-value: 8.2e-44
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS..SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeea..teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  ++ ++lG G+fG+V+  +      ++    a+K++k+++  + ++ e+  +e ++++ ++hp +v++ g   ++e+++++++y++gG+L + Lr++  
   CCD22254.1  99 QIMRTLGTGSFGRVHLVRSI----HNGRFYALKVIKKNTvvRLKQIEHTNDERRMLSVVNHPFLVRMWGTFQDSEQIFMIMDYIEGGELFSLLRRS-- 190
                  6789***********99998....45556677777655411556678888899******************************************8.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                  +k+       +a++v+ ++eyL+s +++ rdl   N+Ll++n ++ki+DfG a+ +  d +y+          ++apE++++k ++++ D WsfG+l+
   CCD22254.1 191 QKFPNPVAKFYAAEVCLALEYLHSLDIIYRDLKPENILLDKNGHIKITDFGFAKYV-PDVTYT----LCGTPDYIAPEVVSSKPYNKSVDWWSFGILI 283
                  88888888889*********************************************.444443....334579************************* PP

                  HHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 196 wEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                  +E+++ g++p+ + ++ +++e++ +   l+ p++ +e++++l+++  ++d ++R
   CCD22254.1 284 YEMLS-GRTPFYDRSTIKTYENILS-APLTFPSYLHEDVQDLLNRLITRDLSKR 335
                  *****.****************976.57999*************9999999988 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.5e-08   5.5e-05     157     288 .]     209     335 ..     136     335 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.5e-08
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggftaL..vragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltl 252
                    +L+++ ++  +++++n+lld++g +++++f+    v + t+     ++  +  pE+++s+          +  ++d W  G+ iy + +   P+  
   CCD22254.1 209 LEYLHSLDIIYRDLKPENILLDKNGHIKITDFGFAkyVPDVTYTL-CGTP-DYIAPEVVSSKP---------YNKSVDWWSFGILIYEMLSGRTPFYD 295
                  379***************************997430033333333.5555.466779999933.........34589******************976 PP

  Kinase-like 253 ateeakeew....kfklckkipekvkaLlkkfLqlsqedR 288
                         e      +       e v+ Ll++++ ++  +R
   CCD22254.1 296 RSTIKTYENilsaPLTFPSYLHEDVQDLLNRLITRDLSKR 335
                  6555444441222333334556888888888888776665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   1.1e-05     0.041     176     256 ..     163     245 ..      11     254 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
  Haspin_kinase 176 pdfyseqqlflvlllkdkGtdLeev.klkswkqalsifwqivkiLyvaE.tkfeFEHRdLhldniLvdknlnvtlidlklsRl 256
                      f++++q+f+++   ++G+  + + + +++ +    f+     L++    +++   RdL+ +niL+dkn+++ + d+  +++
     CCD22254.1 163 GTFQDSEQIFMIMDYIEGGELFSLLrRSQKFPNPVAKFYAAEVCLALEYlHSLDIIYRDLKPENILLDKNGHIKITDFGFAKY 245
                    566666677777776666666666645555666666666665555543225677779*********************98876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.7e-05      0.17     166     198 ..     215     245 ..     164     251 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                   ++ +Dl+p N+l+d  +g++  + Df++a++
  CCD22254.1 215 LDIIYRDLKPENILLD-KNGHI-KITDFGFAKY 245
                 55899***********.77777.8******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1498  (0.0835518); expected 358.6 (0.02)
Passed bias filter:                      799  (0.0445647); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 2976.75
//
Query:       CCD22255.1  [L=603]
Description: hypothetical protein NDAI_0A00970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-20   71.2  16.9    3.9e-13   49.1  10.8    2.4  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        0.1   12.4   0.0       0.29   10.9   0.0    1.8  1  RPAP1_N   RPAP1-like, N-terminal


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1  10.8   4.4e-17   3.9e-13       6     268 ..     107     442 ..     102     455 .. 0.63
   2 !   25.4   0.3   6.8e-10   6.1e-06      64     188 ..     463     590 ..     453     601 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 4.4e-17
       MFS_1   6 flsalarsi.lgpalplal.............aedlg...........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalgllll 79 
                 fl++l+ ++ l+p+++l++             +   g           i  + ++  l + +l++ + sl +G +sdr+Gr +vl ++ l+  ++ ll 
  CCD22255.1 107 FLICLSDMLyLTPSITLTMakvcenikteneqT---GkyecdhtevqtIVSDIQSATLIISGLVTTLVSLKWGNVSDRIGRAKVLGFMGLIKTISNLLR 202
                 333333333366666666633333333332221...13333333333222222333555688999************************9999996666 PP

       MFS_1  80 lfa......sslwlllvlrvlqGlgag..alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wrav.fyilaivsllafvlf 168
                 ++a       s w++++   lq++++g  a++++++ +++d++  e+r+  ++++++++ + + +gp lg++l+ + g  +++  yi  ++ +l+ vl 
  CCD22255.1 203 TVAilpqveYSKWFIIITGSLQSFAGGtfAFMAVANCYVSDITRSEDRTVSLSMVMGTMHATMGIGPTLGSILIYLTGgNELLpLYISIVLVFLFSVLS 301
                 6434556785556799999999999973357999****************************************6666444434888888888889998 PP

       MFS_1 169 llllpeepperkrkspkeee...........................................kgtgpaplvpawkallkdpvlwillialllfffgfs 224
                   +lpe+++ +   +++++                                            k+   +p ++  +++ +  vl+ +l++ +l +  + 
  CCD22255.1 302 STVLPETRKGEDMTNSRKKHqkekeeraqskatiysetsyglerfrrlfkyylfgffsiyapmKRLWLKPTRS-GSLIPRYTVLM-VLAIDILLMSSTV 398
                 8888666666666555555455555556666777777766666665555555444444444443333333333.33333333443.3333333333566 PP

       MFS_1 225 glltllplylqevlglsglllaglllallalvgail.allagrls 268
                 +l   + l+  + ++++  +++g+++++++l  a++ + ++ +++
  CCD22255.1 399 ALGPSMILFNTFMYKWT-SVELGYFVSFAGLSRAVIlSGISPKFI 442
                 66666666777889999.699999999999888555344444444 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 6.8e-10
       MFS_1  64 vlllglllfalglllllfa.sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslg..Wravfyil 157
                 ++ +++++ ++gl +++ + +  + +++++  l+++g ++  p++++ + ++ ++ + g ++g +++  s+ +++ p+l   ++ ss+g    +vfy+ 
  CCD22255.1 463 TMRVAMIFVVAGLSIIV-SkNDRYiYMILCISLSSFG-AICSPTVQSSVIKYCSDGDTGAYFGGMALLRSFVMLVMPALHLKIYgSSVGykPDLVFYVP 559
                 89999999999944444.5544455899999999999.8*********************************************9999988889***** PP

       MFS_1 158 aivsllafvlfllllpeepperkrkspkeee 188
                  + ++++  l lll + ++++ ++ s  eee
  CCD22255.1 560 LVSAIIGSFLTLLLRYHDERSLSNASASEEE 590
                 *******998888888888888888777774 PP

>> RPAP1_N  RPAP1-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.2e-05      0.29      23      44 ..     430     451 ..     429     453 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.2e-05
     RPAP1_N  23 reeLlesLdPkllefLlkRank 44 
                 r+ +l+ + Pk ++fL+kR + 
  CCD22255.1 430 RAVILSGISPKFIDFLKKRYKT 451
                 56699**************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1215  (0.0677673); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 4468.85
//
Query:       CCD22256.1  [L=925]
Description: hypothetical protein NDAI_0A00980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.6e-128  427.6  51.5   8.1e-128  427.1  51.5    1.2  1  PigN           Phosphatidylinositolglycan class N (PIG-N)
    1.4e-12   47.9   4.0    2.2e-10   40.7   3.9    2.2  1  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos
    1.6e-10   40.9   0.0    3.2e-10   39.9   0.0    1.5  1  Sulfatase      Sulfatase
    3.4e-05   23.3   0.0    5.3e-05   22.7   0.0    1.3  1  Metalloenzyme  Metalloenzyme superfamily


Domain annotation for each model (and alignments):
>> PigN  Phosphatidylinositolglycan class N (PIG-N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.1  51.5  1.8e-131  8.1e-128       1     455 []     441     873 ..     441     873 .. 0.94

  Alignments for each domain:
  == domain 1  score: 427.1 bits;  conditional E-value: 1.8e-131
        PigN   1 eGLrYyqtYdrlfLrtivtlgylgWilyllltvlklhvlkekkkkktdsktllalkflavlllllllvllllqkspltyylYllfPvlfweevlaerki 99 
                 eGL+Y++tY++ f rtivt+g+lgWily+++++lk+++ +++ + + + + l+ + f++  ++++l ++l++q+sp+++y+Yl+fP++fw+++l+++ +
  CCD22256.1 441 EGLQYLTTYNWRFRRTIVTFGFLGWILYSFIIFLKVFIIPGTMD-HLHTSLLNYSLFFS--VGIVLNWILYYQRSPFNFYMYLAFPLFFWSQILTNNIV 536
                 7*************************************999984.33444444455667..9************************************* PP

        PigN 100 lkeglkellkevksskslvkkllllllivlvlellvlgyfhreilsvlfvllalwpllygtsflkknsllsllWllsclllsvFpllpvektenltlvv 198
                 l++g+ke++k      ++++k++  ++i++++e +v+g+fhr+i++++f +l+++pl++      +n +l l+W+++ +++s+F+l++++k e+lt+++
  CCD22256.1 537 LTHGIKEFFKGT----TTLNKIVSGVSILFIYEGIVYGFFHRWIFTLIFNILSFYPLIC----GLRNNILNLSWIATSVFISTFTLYDAVKIESLTQIN 627
                 **********99....9999**************************************8....788********************************* PP

        PigN 199 lggllilliglllllksl.skksvsrall.vqvllvvlsllvtrssvsslqakqglpllnqvasWiilvlslv.lpllksskp....lsRllsiflafa 290
                 ++g+li++ +l++l+k++   +  + +++ +q++l++ +l++t++sv+slqa+ glp   q+ +W+i +lsl+ +p+l+ +k+    ++Rllsi+l+fa
  CCD22256.1 628 IAGILIAMGSLIALFKIYkDITRCTLNIFcMQIMLIIGMLFFTNKSVISLQARMGLPRDAQIGGWVITLLSLIvMPFLHYTKSsndyRVRLLSIYLTFA 726
                 *************64332333444555667***************************************************999*************** PP

        PigN 291 ptfilLsisyEgLFyvvlsltlvlwieleaelkqekeesekesesekkekekkksssrsltlsdlRialfflfflqvaFFGtGniasisSFslssvyrf 389
                 p+f++L+is+E+LFy+++++++v+wie+e++lk                   k+s +++ +l+ lR++++ +f+lqvaFFGtGn+asisSFsl+svyr+
  CCD22256.1 727 PIFLILTISFESLFYFLFTAYIVQWIEIESQLKL------------------KESGKQKNWLQVLRVSIIGFFLLQVAFFGTGNVASISSFSLDSVYRL 807
                 ******************************7766..................55567789*************************************** PP

        PigN 390 ipvfspflmgaLlllKlliPfvlvsaalgalnkrlrlpssslfllvllisDvltLnFfflVkdeGS 455
                 ip+f+pf mgaLl+lKl+iP++l+s+ lg+ln +l+++ +++++l++++sD+l+LnFf+l+k+eGS
  CCD22256.1 808 IPIFDPFPMGALLMLKLIIPYLLLSTGLGILNLKLNIHDYTISTLIISTSDILSLNFFYLLKTEGS 873
                 *****************************************************************9 PP

>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   3.9   4.9e-14   2.2e-10       2     237 ..      51     276 ..      50     311 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 4.9e-14
                   EEEEETT-BTTHHHHHG.S........TSHHHHHHHHHSEEESEEE-SSS-SHHHHHHHHHHSS-HHHHS--SSSEEETTTTEEEEEETTTTGGGGG CS
  Phosphodiest   2 lvislDGlradlldrla.e........llpnlaaLakegvsapnlrpvfPtlTfpnhaslvTGlyPgeHGivgNtfydrktgeyvvfvtededaprw 89 
                    +i+ DGlrad+ ++l  +        l+p++++L k+  ++   ++  Pt++ p+h++++ G y +   ++     ++ + +  +f+++++ +   
    CCD22256.1  51 FLIVGDGLRADTTFDLItHpttgktefLAPFIRSLVKTNATYGISHTRMPTESRPGHVAMIAGFYEDVSAVTKGWKENPVDFDS-FFNQSTHTY--S 144
                   588999999777777765555565667788999999966666659999*****************9999999933347777775.788887763..3 PP

                   CTT...S-HHHHHHHTHTTCEEEESETTTTSEBTTCT.SC.TBHHSBTCT.CSTTSCHHHHHHHHHHHHHHHCHTHSHHHHHCTSSESEEEEEECCC CS
  Phosphodiest  90 wqg...epiwdtaakarglkaaalfwpgsevdystyyylvsetppryleddfnakvpledkvdkavlqtwldaafakvvlekelekpdlllvyleet 183
                    ++    p + + a +   k++a ++   + d +          ++ +    + +  + +++d+ ++++  ++ + +++++   ++ ++++++l + 
    CCD22256.1 145 FGSpdiLPMFKDGASD-PNKVDAWMYGHEYEDFT----------QSSI----ELDAYVFRHLDS-LFKNSTSNVTLDHEIR---QEGNVFFLHLLGC 222
                   3335777788888888.78899998853333332..........3333....233334445554.3323344444443333...9************ PP

                   HHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES---EEE CS
  Phosphodiest 184 DtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSDHGmadv 237
                   Dt+gH++ p+s e  d+++++D+ +  L++ +++   +++t++i ++DHGm++ 
    CCD22256.1 223 DTAGHSYRPYSAEYYDNVKYIDEQVSLLVDKVHDFFGDEDTAFIFTADHGMSAF 276
                   ***************************************************975 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   7.2e-14   3.2e-10     207     288 ..     229     307 ..     132     341 .. 0.78

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 7.2e-14
                 CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCGHHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC.....E CS
   Sulfatase 207 arqlleaylnsveyvDdligrvlaaLeenglldntlvvftSDhgasleesngplrggkganayeggtrvPllvwwpgekap.....r 288
                 +r + ++y++ v+y+D++++ +++++ +   +++t ++ft+Dhg s  +         + + +++ tr+Pl+ w+ g ++p      
  CCD22256.1 229 YRPYSAEYYDNVKYIDEQVSLLVDKVHDFFGDEDTAFIFTADHGMSAFG--------SHGDGHPNNTRTPLVAWGAGLNKPvknevP 307
                 3377899****************************************55........3335678999**************544443 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.2e-08   5.3e-05     126     242 ..     207     327 ..     180     333 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.2e-08
                    HH.CC.-SEEEEEE-HHHHHHHTT-H..HHHHHHHHHHHHHHHHHHTTS-....TTTEEEEEE-SSB--TTTSS........-----EEEEEESTT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 126 ailsgkfdlvvvniknaDmvGHtgdl..eatiaaieaaDeavkeildaie....qvdgilvvtADHgnaedmvkrdkqplTsHtlepVPilivgkg 215
                    +i  ++ +++++++   D +GH+  +  +++ + ++++De+v  ++d+++    ++d+ ++ tADHg      + d +p         P++ +g g
     CCD22256.1 207 EI-RQEGNVFFLHLLGCDTAGHSYRPysAEYYDNVKYIDEQVSLLVDKVHdffgDEDTAFIFTADHGMSAFGSHGDGHPNN----TRTPLVAWGAG 297
                    56.455899*************9765337899********999988888633336999*********99887775554432....23588888888 PP

                    ----S--SSHHHHT....T-TTEEEEGGGHH CS
                    xxxxxxxxxxxxxx....xxxxxxxxxxxxx RF
  Metalloenzyme 216 lapdkvkegakfre....kggLanvaatlln 242
                    l++  vk+++        + gLa+++   ++
     CCD22256.1 298 LNK-PVKNEVPIYDnyteSWGLADIKRNDIK 327
                    886.444433332223337778887777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (925 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 6603.28
//
Query:       CCD22257.1  [L=365]
Description: hypothetical protein NDAI_0A00990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-73  239.9 136.5    7.7e-09   34.9   6.2   10.0 10  PIR       Yeast PIR protein repeat
  ------ inclusion threshold ------
       0.61    9.9  23.8        2.4    7.9   8.9    2.2  2  DUF2807   Putative auto-transporter adhesin, head GIN domain
        4.9    7.0  22.9        5.8    6.8  22.9    1.1  1  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> PIR  Yeast PIR protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   5.8   1.1e-11   6.6e-08       3      18 .]      63      78 ..      62      78 .. 0.96
   2 ?   -4.6   2.1         3   1.8e+04      14      18 .]      82      86 ..      82      86 .. 0.89
   3 !   34.9   6.2   1.3e-12   7.7e-09       1      18 []      88     105 ..      88     105 .. 0.96
   4 !   34.6   7.6   1.6e-12   9.4e-09       1      18 []     107     124 ..     107     124 .. 0.96
   5 !   34.6   7.6   1.6e-12   9.4e-09       1      18 []     126     143 ..     126     143 .. 0.96
   6 !   34.6   7.6   1.6e-12   9.4e-09       1      18 []     145     162 ..     145     162 .. 0.96
   7 !   34.6   7.6   1.6e-12   9.4e-09       1      18 []     170     187 ..     170     187 .. 0.96
   8 !   34.6   7.6   1.6e-12   9.4e-09       1      18 []     189     206 ..     189     206 .. 0.96
   9 !   34.6   7.6   1.6e-12   9.4e-09       1      18 []     208     225 ..     208     225 .. 0.96
  10 !   25.6   5.7   1.1e-09   6.4e-06       2      17 ..     228     243 ..     227     243 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 1.1e-11
         PIR  3 aVSQIgDGQiQATTat 18
                aVSQIgDGQiQATT+t
  CCD22257.1 63 AVSQIGDGQIQATTKT 78
                9*************98 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 3
         PIR 14 ATTat 18
                ATT+t
  CCD22257.1 82 ATTKT 86
                9**98 PP

  == domain 3  score: 34.9 bits;  conditional E-value: 1.3e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQI+DGQiQATT+t
  CCD22257.1  88 AAAVSQINDGQIQATTKT 105
                 89**************98 PP

  == domain 4  score: 34.6 bits;  conditional E-value: 1.6e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQIgDGQiQATT+t
  CCD22257.1 107 AAAVSQIGDGQIQATTKT 124
                 89**************98 PP

  == domain 5  score: 34.6 bits;  conditional E-value: 1.6e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQIgDGQiQATT+t
  CCD22257.1 126 AAAVSQIGDGQIQATTKT 143
                 89**************98 PP

  == domain 6  score: 34.6 bits;  conditional E-value: 1.6e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQIgDGQiQATT+t
  CCD22257.1 145 AAAVSQIGDGQIQATTKT 162
                 89**************98 PP

  == domain 7  score: 34.6 bits;  conditional E-value: 1.6e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQIgDGQiQATT+t
  CCD22257.1 170 AAAVSQIGDGQIQATTKT 187
                 89**************98 PP

  == domain 8  score: 34.6 bits;  conditional E-value: 1.6e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQIgDGQiQATT+t
  CCD22257.1 189 AAAVSQIGDGQIQATTKT 206
                 89**************98 PP

  == domain 9  score: 34.6 bits;  conditional E-value: 1.6e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQIgDGQiQATT+t
  CCD22257.1 208 AAAVSQIGDGQIQATTKT 225
                 89**************98 PP

  == domain 10  score: 25.6 bits;  conditional E-value: 1.1e-09
         PIR   2 aaVSQIgDGQiQATTa 17 
                 aa+SQI DGQ+QAT++
  CCD22257.1 228 AAASQIADGQVQATSS 243
                 7*************97 PP

>> DUF2807  Putative auto-transporter adhesin, head GIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   8.9    0.0004       2.4      77     161 ..      77     160 ..      54     164 .. 0.76
   2 ?    7.7   7.1   0.00048       2.9      85     161 ..     167     242 ..     161     262 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0004
                 EEEE-S-EEEEEEEEEEECSEEEEEEEEEEEEEEEEECCEEEEEEEEEEEEEEEEECCEEEEEEEEEEEEEEEEEECCEEEEEEE CS
     DUF2807  77 sievegtlkadklelniagsgditlkldaeelsveasgsgdielsGtadrlevsvaGsGeleardlkasevevevaGsgdaevna 161
                 + +++ t k++++ ++   +g+i+++ +++   v+  g g+i+++ +++ + vs  G+G+++a   k++ + v+  G g+++++ 
  CCD22257.1  77 KTTSKATTKTKAAAVSQINDGQIQATTKTKAAAVSQIGDGQIQATTKTQAAAVSQIGDGQIQAT-TKTQAAAVSQIGDGQIQATT 160
                 4455557777777777788888888888888888888888888888888888888888888886.47788888888888887765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00048
                 EEEEEEEEEECSEEEEEEEEEEEEEEEEECCEEEEEEEEEEEEEEEEECCEEEEEEEEEEEEEEEEEECCEEEEEEE CS
     DUF2807  85 kadklelniagsgditlkldaeelsveasgsgdielsGtadrlevsvaGsGeleardlkasevevevaGsgdaevna 161
                 k++++ ++  g+g+i+++ +++   v+  g g+i+++ +++ + vs  G+G+++a   +++ +  ++ + g+++++ 
  CCD22257.1 167 KTKAAAVSQIGDGQIQATTKTQAAAVSQIGDGQIQATTKTQAAAVSQIGDGQIQATTKTTKAAASQI-ADGQVQATS 242
                 5566667777899999999999999999999999999999999999999999999876665555444.455555555 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  22.9   0.00097       5.8      94     282 ..      66     259 ..       4     310 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00097
       TFIIA  94 vipagksvqslta...nssaataatfslpakleppvqipagvtlqtasgqlykvnv......qasgaqqia.aqplqqvvqqsqgsaaqssvaalqaqs 182
                 +i              + +++t ++ ++++k   + qi  g+ + t+++++  v+       qa+ ++q+a  +++   + q++ ++++++v+++  + 
  CCD22257.1  66 QIG---------DgqiQATTKTTSKATTKTKAAAVSQINDGQIQATTKTKAAAVSQigdgqiQATTKTQAAaVSQIGDGQIQATTKTQAAAVSQIGDG- 154
                 222.........12333444555556666666666667777777777765555554555544222222222022222222234444444444444444. PP

       TFIIA 183 qqaqalaepqqqlekq........qqqqqqqqqqqqqqqvqqqqqe.......esqqaqqasqeqvagsqvessqtdgaedaleeespv.....legel 261
                  q qa++++    + +                  q q+++++q  +       + q++++++      +++ s+  dg+ +a+++ +++      +g++
  CCD22257.1 155 -QIQATTKTLAPTKTKaaavsqigD--------GQIQATTKTQAAAvsqigdgQIQATTKTQ------AAAVSQIGDGQIQATTKTTKAaasqiADGQV 238
                 .333333333331111112222210........11111222222222222222111111111......1111111222222221111111111255555 PP

       TFIIA 262 saeeeagaqkeelsreeidri 282
                 +a++++ a+++++  +ei++ 
  CCD22257.1 239 QATSSSIAHNSTSIPNEIKDA 259
                 555555554443333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1116  (0.0622455); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 2742.31
//
Query:       CCD22258.1  [L=339]
Description: hypothetical protein NDAI_0A01000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-66  216.8 122.2    4.2e-09   35.7   2.7   10.6 10  PIR       Yeast PIR protein repeat
  ------ inclusion threshold ------
      0.099   12.8   6.8         51    4.0   0.1    4.6  5  DUF5544   Family of unknown function (DUF5544)
       0.25   11.3   5.0         33    4.5   0.2    3.6  4  HTH_37    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> PIR  Yeast PIR protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   5.5   1.5e-10   9.3e-07       3      18 .]      63      78 ..      62      78 .. 0.95
   2 !   32.4   5.1   7.5e-12   4.5e-08       2      18 .]      78      94 ..      77      94 .. 0.94
   3 !   30.9   4.9   2.3e-11   1.4e-07       2      18 .]      97     113 ..      96     113 .. 0.93
   4 !   32.2   5.4   9.3e-12   5.5e-08       2      18 .]     113     129 ..     112     129 .. 0.94
   5 !   30.9   4.9   2.3e-11   1.4e-07       2      18 .]     132     148 ..     131     148 .. 0.93
   6 !   32.2   5.4   9.3e-12   5.5e-08       2      18 .]     148     164 ..     147     164 .. 0.94
   7 !   32.8   4.5   5.8e-12   3.5e-08       2      18 .]     167     183 ..     166     183 .. 0.94
   8 !   35.7   2.7     7e-13   4.2e-09       2      17 ..     186     201 ..     185     201 .. 0.93
   9 !   21.4   8.9   2.2e-08   0.00013       3      18 .]     203     218 ..     203     218 .. 0.92
  10 ?    2.6   3.0     0.017     1e+02       8      13 ..     224     229 ..     224     229 .. 0.96

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.5e-10
         PIR  3 aVSQIgDGQiQATTat 18
                aVSQI DGQ+QATT++
  CCD22258.1 63 AVSQIADGQVQATTKA 78
                9*************97 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 7.5e-12
         PIR  2 aaVSQIgDGQiQATTat 18
                aaVSQIgDGQiQA+T+t
  CCD22258.1 78 AAVSQIGDGQIQAATKT 94
                7**************98 PP

  == domain 3  score: 30.9 bits;  conditional E-value: 2.3e-11
         PIR   2 aaVSQIgDGQiQATTat 18 
                 aaVSQI+DGQiQA+T++
  CCD22258.1  97 AAVSQINDGQIQAATKA 113
                 7**************97 PP

  == domain 4  score: 32.2 bits;  conditional E-value: 9.3e-12
         PIR   2 aaVSQIgDGQiQATTat 18 
                 aaVSQIgDGQiQA+T+t
  CCD22258.1 113 AAVSQIGDGQIQAATKT 129
                 7**************98 PP

  == domain 5  score: 30.9 bits;  conditional E-value: 2.3e-11
         PIR   2 aaVSQIgDGQiQATTat 18 
                 aaVSQI+DGQiQA+T++
  CCD22258.1 132 AAVSQINDGQIQAATKA 148
                 7**************97 PP

  == domain 6  score: 32.2 bits;  conditional E-value: 9.3e-12
         PIR   2 aaVSQIgDGQiQATTat 18 
                 aaVSQIgDGQiQA+T+t
  CCD22258.1 148 AAVSQIGDGQIQAATKT 164
                 7**************98 PP

  == domain 7  score: 32.8 bits;  conditional E-value: 5.8e-12
         PIR   2 aaVSQIgDGQiQATTat 18 
                 aaVSQIgDGQ+QA+T+t
  CCD22258.1 167 AAVSQIGDGQVQAATKT 183
                 7**************98 PP

  == domain 8  score: 35.7 bits;  conditional E-value: 7e-13
         PIR   2 aaVSQIgDGQiQATTa 17 
                 aaVSQIgDGQ+QATT+
  CCD22258.1 186 AAVSQIGDGQVQATTK 201
                 7**************6 PP

  == domain 9  score: 21.4 bits;  conditional E-value: 2.2e-08
         PIR   3 aVSQIgDGQiQATTat 18 
                 a+SQI+DGQ+QAT ++
  CCD22258.1 203 AASQISDGQVQATQTA 218
                 89***********876 PP

  == domain 10  score: 2.6 bits;  conditional E-value: 0.017
         PIR   8 gDGQiQ 13 
                 gDGQ+Q
  CCD22258.1 224 GDGQVQ 229
                 8***** PP

>> DUF5544  Family of unknown function (DUF5544)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.013        79      12      43 ..      59      90 ..      50      96 .. 0.79
   2 ?    3.9   0.1    0.0093        56      11      43 ..      93     125 ..      88     129 .. 0.82
   3 ?    4.0   0.1    0.0086        51      11      43 ..     128     160 ..     123     165 .. 0.82
   4 ?    0.6   0.0     0.098   5.8e+02      28      44 ..     164     180 ..     159     185 .. 0.81
   5 ?    1.6   0.1     0.046   2.7e+02      28      44 ..     183     199 ..     173     223 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.013
     DUF5544 12 atrgaarphkqgtkpmitrpsvsqlgegkcps 43
                a r a     +g     t+ +vsq+g+g+  +
  CCD22258.1 59 AKRDAVSQIADGQVQATTKAAVSQIGDGQIQA 90
                567777777788888999999*****998765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0093
     DUF5544  11 eatrgaarphkqgtkpmitrpsvsqlgegkcps 43 
                 ++t+ a    ++g     t+ +vsq+g+g+  +
  CCD22258.1  93 KTTKAAVSQINDGQIQAATKAAVSQIGDGQIQA 125
                 677888888899999999***********9765 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0086
     DUF5544  11 eatrgaarphkqgtkpmitrpsvsqlgegkcps 43 
                 ++t+ a    ++g     t+ +vsq+g+g+  +
  CCD22258.1 128 KTTKAAVSQINDGQIQAATKAAVSQIGDGQIQA 160
                 677888888899999999***********9765 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.098
     DUF5544  28 itrpsvsqlgegkcpss 44 
                  t+ +vsq+g+g++ ++
  CCD22258.1 164 TTKAAVSQIGDGQVQAA 180
                 5899********98765 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.046
     DUF5544  28 itrpsvsqlgegkcpss 44 
                  t+ +vsq+g+g++ ++
  CCD22258.1 183 TTKAAVSQIGDGQVQAT 199
                 46777777777776544 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2    0.0055        33      31      58 ..      82     109 ..      54     118 .. 0.84
   2 ?    4.2   0.1     0.007        42      33      58 ..     119     144 ..     110     153 .. 0.84
   3 ?    2.3   0.1     0.028   1.7e+02      33      58 ..     154     179 ..     145     184 .. 0.84
   4 ?    1.8   0.0     0.038   2.3e+02      34      57 ..     174     197 ..     164     200 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0055
                 T--HHHHHHHHT--HHHHHHHHTT--TT CS
      HTH_37  31 elsqseaaqllgiaqPkvsrllrgklsr 58 
                 ++ + +++++++++++ vs++ +g+++ 
  CCD22258.1  82 QIGDGQIQAATKTTKAAVSQINDGQIQA 109
                 56667999*****************986 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.007
                 -HHHHHHHHT--HHHHHHHHTT--TT CS
      HTH_37  33 sqseaaqllgiaqPkvsrllrgklsr 58 
                  + +++++++++++ vs++ +g+++ 
  CCD22258.1 119 GDGQIQAATKTTKAAVSQINDGQIQA 144
                 5668999****************986 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.028
                 -HHHHHHHHT--HHHHHHHHTT--TT CS
      HTH_37  33 sqseaaqllgiaqPkvsrllrgklsr 58 
                  + +++++++++++ vs++ +g+++ 
  CCD22258.1 154 GDGQIQAATKTTKAAVSQIGDGQVQA 179
                 5668999*************999986 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.038
                 HHHHHHHHT--HHHHHHHHTT--T CS
      HTH_37  34 qseaaqllgiaqPkvsrllrgkls 57 
                 + +++++++++++ vs++ +g+++
  CCD22258.1 174 DGQVQAATKTTKAAVSQIGDGQVQ 197
                 6689999***********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1106  (0.0616878); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2384.86
//
Query:       CCD22259.1  [L=912]
Description: hypothetical protein NDAI_0A01010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-264  879.8  31.9   2.2e-264  879.5  31.9    1.1  1  Vps35     Vacuolar protein sorting-associated protein 35
      0.003   17.8   0.5      0.011   16.1   0.6    1.8  2  DUF5534   Family of unknown function (DUF5534)
  ------ inclusion threshold ------
      0.086   12.9   2.4       0.22   11.6   0.3    2.9  2  TetR_C_8  Transcriptional regulator C-terminal region


Domain annotation for each model (and alignments):
>> Vps35  Vacuolar protein sorting-associated protein 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  879.5  31.9  3.6e-268  2.2e-264       2     730 .]       7     806 ..       6     806 .. 0.90

  Alignments for each domain:
  == domain 1  score: 879.5 bits;  conditional E-value: 3.6e-268
       Vps35   2 LeealavvkeqsflmkraleedklmdaLkhasnmlseLrtssLsPkqYYeLYmavfdeLrhLssyLkdehkkkkkkladLYelVQyagnivpRLYLlit 100
                 Le+a++ +k+q++l++r+l++++lm+aLk+as ml+eLr+++L PkqYYe+Y ++fd+L++Ls yL+d+h+++++ ladLYelVQyagn++pRLYL+it
  CCD22259.1   7 LEKAISSIKKQTYLIQRSLNKRDLMSALKYASLMLAELRNPKLPPKQYYEIYTLIFDSLSNLSLYLIDNHPNHHH-LADLYELVQYAGNVLPRLYLMIT 104
                 89**********************************************************************777.*********************** PP

       Vps35 101 vGtvyikskdapakeilkDlvEmcrGvQhPiRGLFLRyYLsqmtkdlLpdteseeee....eegelkdsieflltNFiEmnkLWvRlqhqghsrerekr 195
                 vG++y+++++ p+ eilkD++Emcr++Q+PiRGLF+RyYLsq+tk++L ++ +++++     e ++++++++++tNFiEmnkLWvRlqhqg+ rer++r
  CCD22259.1 105 VGASYLQCPNPPRDEILKDMMEMCRAIQNPIRGLFIRYYLSQTTKQILIQKLKDDSDndsnLEVSMNFNCQYIITNFIEMNKLWVRLQHQGPLRERKQR 203
                 *********************************************999887766665444467788899999*************************** PP

       Vps35 196 ekeRkeLkiLVGsnLvrLsqLegvdlelYkekiLpkileqivqcrDvlaQeYLldviiqvFpdefhlatLdkllsailklnpkvnikeilisLidRLak 294
                 +keRkeL+iLVGs+Lv Ls++++ ++++Ykek+Lp ileqi+qcrDv+aQeYL+++++qvFpdefhl+tL  ll+a+l+lnp+++ +++l sL++RL+ 
  CCD22259.1 204 TKERKELQILVGSQLVALSEIIDDNFTIYKEKVLPVILEQITQCRDVIAQEYLFEILFQVFPDEFHLETLPLLLDAMLHLNPELSHDKLLWSLVERLNV 302
                 *************************************************************************************************** PP

       Vps35 295 yaerekksevpe.....dvdlfevfweqleelvearpdlsledilallesllnlslklypdnlenvdkvlelaaeklkevel.eeleskeaeeellkLL 387
                 ++ r+ +++++      + +lf++fw+++++l+e+rpdlsl++++ l++sllnlslk+yp+++en+d+ +el+ +k+++ +  +   ++e    l +L+
  CCD22259.1 303 FIVRQ-NEGLNAvdgmkEDNLFKIFWQFVSKLNEERPDLSLQQTIGLVKSLLNLSLKWYPESVENLDHSYELVLQKYQDLGDdPVPIDSE--CFLSDLI 398
                 ****4.4444433556699************************************************************88742233332..2344444 PP

       Vps35 388 l......apikslksvltvlkl.enykellsllsyktrkkvaleivdai..........leeketkietleevekllellsvlikdekd.......... 459
                 l      +  +  +++l+++++ ++y++llsl++   ++++++e++da+           +++++ i+++ ++e++l++++++ik++ +          
  CCD22259.1 399 LlknidiHEKDRTNTFLKLVSQsDSYRKLLSLQRLPLQQDIINELLDAFtmgffgtnseANASKEIINSKVQLEHILSMCEPIIKSRISlltpkegnnn 497
                 444655444445555777777778*************************7777776544333559********************76656778899999 PP

       Vps35 460 ..........kee....eefaeeqelvaklvhli....kndd......ldkqfklllllrkkllkggekrikytlpalitallklarklkklkkkekek 534
                           + +      ++ +qe++ak+ h+i    +  +      ++kq+++ll+l+++++kgg+ +ikyt+p++it+++kl+rk +klk++  +k
  CCD22259.1 498 itedeaqdddE-QdetfIILDANQEKLAKFTHVIinslN--NseilytVEKQMECLLILKSWYYKGGS-NIKYTYPSIITNFWKLIRKSNKLKSRLPKK 592
                 98887765541.14455567889***********55542..23345546*****************99.****************************** PP

       Vps35 535 kekleekvkklfkfihqliselvskae..aaelalklflqaalvadqleleeiayefftqaftiYeesisdskaqlqaivliigtLqktrsl.seenye 630
                 k+++++ +kklfk+i++++++l++ +    ++ ++k++lq+a++adql+l+ei+y+ff+qaft++ees+sdsk+q+q++v++++tLqktrsl +e++y+
  CCD22259.1 593 KSYYDDVIKKLFKHISRCTNDLFNLCGnsYTDAIYKFNLQSASLADQLSLNEISYDFFSQAFTVFEESLSDSKTQFQSLVYMAQTLQKTRSLyKESYYD 691
                 **************************999889************************************************************77788** PP

       Vps35 631 tLitkltlhaskLlkkkdqcravllcshLfw........ee....eekyrdgkrvleCLqkslriAdsimdnavslelfveiLnkylyyf...ekgnee 714
                 +Li+++tlh+skLlkk+dqcrav+lcshL+w        ee    ++ +rdgkrvleC+q+slr Adsimdn++s+el++ei+n++lyyf   +++++ 
  CCD22259.1 692 SLIVRCTLHGSKLLKKQDQCRAVYLCSHLWWateisilgEEegvtRNFHRDGKRVLECIQRSLRSADSIMDNVQSCELMIEIFNRCLYYFihgDESENF 790
                 *******************************7666665521688888*******************************************777779999 PP

       Vps35 715 vtekyingLieliken 730
                  t kyingLielik+n
  CCD22259.1 791 LTIKYINGLIELIKTN 806
                 9************997 PP

>> DUF5534  Family of unknown function (DUF5534)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.6   1.8e-06     0.011     127     165 ..     500     538 ..     486     548 .. 0.87
   2 ?   -2.6   0.0      0.97   5.8e+03     118     134 ..     723     739 ..     718     744 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.8e-06
     DUF5534 127 eeegsedegqdestyLLPenekeLekfihsvirskrrkn 165
                 e+e+++d+ qde   +L  n + L kf h +i s  + +
  CCD22259.1 500 EDEAQDDDEQDETFIILDANQEKLAKFTHVIINSLNNSE 538
                 677888888***********************9977655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.97
     DUF5534 118 nvkiplLgdeeegsede 134
                    i++Lg+ee+++ + 
  CCD22259.1 723 ATEISILGEEEGVTRNF 739
                 5689*******998765 PP

>> TetR_C_8  Transcriptional regulator C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   3.7e-05      0.22      13      83 ..     120     190 ..     119     204 .. 0.90
   2 ?   -2.5   0.1      0.92   5.5e+03      44      74 ..     626     654 ..     596     656 .. 0.41

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.7e-05
                 HHHHTHHHHHHHHHH-.THHHHHHHHHHHHHHHHHHHHHH-TT--S-HHHHHHHHHHHHHHHHHHHHHHHH CS
    TetR_C_8  13 yikenkdfyknllssngresfekylkelikelilkvieelsegkelseedkefiadfysygfvgvildWle 83 
                 ++k+  ++++++ ++     ++ yl + +k+++++++++ s++++  e  ++f +++++  f+++ + W++
  CCD22259.1 120 ILKDMMEMCRAIQNPIRGLFIRYYLSQTTKQILIQKLKDDSDNDSNLEVSMNFNCQYIITNFIEMNKLWVR 190
                 56777899999999999999999**************99999999999*********************97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.92
                 HHHHHHHHH-TT--S-HHHHHHHHHHHHHHH CS
    TetR_C_8  44 lilkvieelsegkelseedkefiadfysygf 74 
                 +++ ++++ s  ++l    +e+ +df+s +f
  CCD22259.1 626 IYKFNLQSASLADQL--SLNEISYDFFSQAF 654
                 222222222222222..22444556666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (912 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 5805.62
//
Query:       CCD22260.1  [L=370]
Description: hypothetical protein NDAI_0A01020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-41  141.4   0.0    8.2e-41  140.2   0.0    1.6  1  peroxidase  Peroxidase


Domain annotation for each model (and alignments):
>> peroxidase  Peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   0.0   4.6e-45   8.2e-41      10     229 .]     114     331 ..      99     331 .. 0.92

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 4.6e-45
                 CCTTTHCHHHHHHHHHHHTT.......SSTTSCHHHTCCHHCSGGGTTTHHHHHHHHHHHHHCTT.....S-HHHHHHHHHHHHHHCTT--..--EE-- CS
  peroxidase  10 kadrdmgpsllrlafhdcfv.......gGcdgsvlllepektapaNaslrkgldvldaikakleaacpgvvScADlialaardavelaggplvpvslGR 101
                 +++ ++gp l+rla+h++++       gG   ++ ++++e ++p N++l+++ ++l++i +++++     +S  Dl++l++ +av++++gp +p+++GR
  CCD22260.1 114 DNYIGYGPVLVRLAWHCSGTwdkndntGGSFNGTYRFKQECNDPSNKGLQNAGEFLKPIFEEFPW-----ISHGDLYTLGGVTAVQEMQGPKIPWRPGR 207
                 448899*********************999999********************************.....*********************88****** PP

                 -S-SSGGG.S-S...-.-TS-HHHHHHHHHHHT--HHHHHHHHGGGGC-EESHH...........SS-GGGT....HHS.........EETS-STHHHH CS
  peroxidase 102 rDatessa.sevsnlPdptasvdelrdkfarkgltdeelvaLsGaHtiGkahcssfsrlyaaadpaldaayaaekCasgntelvdld.tptkfdnsyfk 198
                  D+ es + ++   lPd +++++ +r+ far++++d+e+vaL+GaH++Gk+h +             +++y++                +++f+n++f 
  CCD22260.1 208 VDQPESATpANG-RLPDADTDAKYVRNYFARLNMNDREVVALMGAHALGKTHLE-------------NTGYEGP-----------WGfANNTFTNEFFL 281
                 *******96666.***************************************65.............3344432...........112569******** PP

                 HHCC...................T-EEEHHHHHHHHSCCCHHHHHHCCC- CS
  peroxidase 199 nlle...................krgllrsDqvllsdsetralvekyaes 229
                 nll+                   + ++l++D++l++d+++ ++v++ya++
  CCD22260.1 282 NLLNedwkwekneagnmqwgsdkGFMMLPADMALVQDPKYLPIVKEYAND 331
                 ************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2616.19
//
Query:       CCD22261.1  [L=199]
Description: hypothetical protein NDAI_0A01030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-67  226.1   0.0    2.5e-67  225.9   0.0    1.0  1  Pam17     Mitochondrial import protein Pam17
  ------ inclusion threshold ------
       0.02   14.8   0.0      0.033   14.0   0.0    1.3  1  DUF1086   Domain of Unknown Function (DUF1086)


Domain annotation for each model (and alignments):
>> Pam17  Mitochondrial import protein Pam17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.9   0.0   2.8e-71   2.5e-67       5     164 ..      37     196 ..      33     197 .. 0.97

  Alignments for each domain:
  == domain 1  score: 225.9 bits;  conditional E-value: 2.8e-71
       Pam17   5 sesssaaakeeekkltwneffklrkkrrrielvasivtallglllgaavlstleidptqqilglDplvvlglatlasgalGwllGpvlgsavfkllnrk 103
                 +++++ ++++++++ltw++ff+lrk++rri++++s +ta+lg+++++ +lst+eidptq+i+g+Dplvv++++ +asgalG+l+Gp++gs++fkl++rk
  CCD22261.1  37 TKNNDPKTNDNNQNLTWTNFFQLRKQQRRINVGSSAFTAFLGCNISWVYLSTMEIDPTQMIFGFDPLVVISAGLVASGALGYLFGPLFGSQLFKLTHRK 135
                 56667888999**************************************************************************************** PP

       Pam17 104 klkqleekekeFlerikknRvdpssqsvsnpvpDYYGekigslkdYrqWLrdqrafnrkak 164
                  l++++ k+keFl++i +nRvd+ssqs+snpvpDYYGe++gslk+YrqWLrd++++ rkak
  CCD22261.1 136 SLNEFNLKNKEFLKHIIENRVDASSQSFSNPVPDYYGERVGSLKEYRQWLRDCHSYARKAK 196
                 ***********************************************************97 PP

>> DUF1086  Domain of Unknown Function (DUF1086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.7e-06     0.033      62     100 ..     129     168 ..     120     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-06
     DUF1086  62 vrelkqktedeikaYgslFlrHlaeegad.nsetfaDGvP 100
                  +  + k+ +e++     Fl+H++e+  d  s++f++ vP
  CCD22261.1 129 FKLTHRKSLNEFNLKNKEFLKHIIENRVDaSSQSFSNPVP 168
                 5567899*******************97625689**9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1497.85
//
Query:       CCD22262.1  [L=995]
Description: hypothetical protein NDAI_0A01040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-07   29.0  10.2      2e-06   27.8  10.2    1.6  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
       0.12   12.5   2.4       0.32   11.2   2.4    1.7  1  MIEAP     Mitochondria-eating protein


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8  10.2   2.3e-10     2e-06       2      32 ..      71     102 ..      70     108 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.3e-10
                 S-HHHHHCT---STSSSS-HHHHHCT..HHHCC CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkkln..leCtf 32 
                 +C+nC+k+K+KCd+ +P C+ Ck+l+    C +
  CCD22262.1  71 VCTNCKKRKSKCDRSRP-CGTCKRLGdgNSCFY 102
                 7****************.*******97778875 PP

>> MIEAP  Mitochondria-eating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.4   3.6e-05      0.32      46     122 ..     273     345 ..     226     358 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.6e-05
       MIEAP  46 vlsfrvakealrslkervrkllstssadgsetkelssleeavsdylrkeadlydvksiveevisellktlkekpslk 122
                   +f++ake+ r++++r++++ + ++  +++    ++l+e+ +++l+++++ y+ ++++++ i e ++++ +++s +
  CCD22262.1 273 LTAFDSAKEQERQKQKRLQNAQAEERPLSAQ----QQLDEETRNQLHTSTSFYKQHQMIHKAIFEKFAKYRRNDSTR 345
                 489******************9997777777....8******************77777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (995 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1723  (0.0961013); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 6731.25
//
Query:       CCD22263.1  [L=553]
Description: hypothetical protein NDAI_0A01050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-43  147.0   0.2    4.4e-43  147.0   0.2    1.9  2  Las1         Las1-like
     0.0072   16.4   4.6     0.0072   16.4   4.6    3.2  2  PRP9_N       Pre-mRNA-splicing factor PRP9 N-terminus
  ------ inclusion threshold ------
      0.019   15.4   0.7      0.067   13.6   0.7    2.0  1  ATP-synt_F6  Mitochondrial ATP synthase coupling factor 6


Domain annotation for each model (and alignments):
>> Las1  Las1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   0.2   7.3e-47   4.4e-43       1     152 [.       7     162 ..       7     163 .. 0.97
   2 ?   -3.3   0.2       1.5   8.9e+03       2      21 ..     202     221 ..     201     248 .. 0.63

  Alignments for each domain:
  == domain 1  score: 147.0 bits;  conditional E-value: 7.3e-47
        Las1   1 tpWrdrrellevreqlya...essseeeerkralarvsawrsrgneklphavestalLleailsdeekklsasssssalraaysaalvRfvnglldsaq 96 
                 tpWrd+ el++++ ++y+    ++++e++r+ra+ +v  +r +g++ +ph+v +t ++++ il de++++s + +++++r++y ++l+Rfvng+ld++q
  CCD22263.1   7 TPWRDSIELETLKGWFYDhklGTKQNEDQRSRAILKVMSYRLKGSQYIPHVVSTTSQITTSILLDESSSNSCDIDEMNVRLSYMMSLIRFVNGVLDPTQ 105
                 8****************85555569999*********************************************************************** PP

        Las1  97 kkqraasvaavakelglpatlVelRHeatHe.elpslaeLreaakkaLewlwenYWk 152
                 ++++a++++ +ak++gl ++lV+lRH  tHe +lp ++ Lr a ++aLewlw nYW+
  CCD22263.1 106 QSEFAIPLHVLAKKVGLSSWLVDLRHWGTHErDLPGIDILRIASQEALEWLWVNYWN 162
                 *******************************9************************8 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.5
        Las1   2 pWrdrrellevreqlyaess 21 
                  W++rr++le  +++ +++s
  CCD22263.1 202 LWKKRRNFLEEEKWIWENDS 221
                 68888888888888886333 PP

>> PRP9_N  Pre-mRNA-splicing factor PRP9 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   4.6   1.2e-06    0.0072      44     115 ..     220     290 ..     207     309 .. 0.76
   2 ?   -2.5  10.3      0.76   4.6e+03      44      90 ..     401     452 ..     389     532 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.2e-06
      PRP9_N  44 dke.ipkksdisknkiykskkskrsrkqillQqhEinlFledykkklksleklkeeadseelkdkekslekfk 115
                 d + i +++ + ++   k+ k+k++  q ++ q Ein F  +++++ k+l++++++  +e ++ + ++++kf 
  CCD22263.1 220 DSNvITSSNFVVNEPTKKKNKTKKKHNQEITPQDEINSFAFNFRDIWKQLNSIENK-TIEPIQ-ETSQIDKFI 290
                 444355545555555667779999*****************************754.777776.667788775 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.76
      PRP9_N  44 dkeipkksdisknkiykskkskrsrkqillQ.....qhEinlFledykkklk 90 
                 + +++++ + ++n+  ++++ k+++k+ l       q+Ein++++  +k+  
  CCD22263.1 401 SDRLSEQANNNNNDSWRQRQFKKKKKKHLEGkmdeiQKEINTYVDSLTKQYG 452
                 3457778888999999998888877765532222227888888888777654 PP

>> ATP-synt_F6  Mitochondrial ATP synthase coupling factor 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.7   1.1e-05     0.067      48      94 ..     419     462 ..     414     466 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
  ATP-synt_F6  48 reYatksksaggklvdagpeiekelkeeleklaklyGggdltkfPdf 94 
                  r++++k+k+    l    +ei+ke+++ ++ l k+yG++ +  f df
   CCD22263.1 419 RQFKKKKKKH---LEGKMDEIQKEINTYVDSLTKQYGESGMVLFYDF 462
                  4554444444...446789*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1567  (0.0874003); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3763.94
//
Query:       CCD22264.1  [L=234]
Description: hypothetical protein NDAI_0A01060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-24   87.3  12.5    1.4e-24   87.3  12.5    1.5  2  RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5


Domain annotation for each model (and alignments):
>> RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4      0.37   6.7e+03     160     160 ..      23      23 ..       4      52 .. 0.48
   2 !   87.3  12.5     8e-29   1.4e-24       2     183 ..      56     233 ..      55     234 .] 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.37
                   X CS
  RNA_polI_A34 160 a 160
                   +
    CCD22264.1  23 D 23 
                   1 PP

  == domain 2  score: 87.3 bits;  conditional E-value: 8e-29
                   TTEEEEEEEEETTS-GGG-S..EE---SSCSEEEE.EETTEEEEEEEGGG....CS-GTTEEEEEE-SSST.....B-TTS...S.-B-SEEEEEEE CS
  RNA_polI_A34   2 egkelWlIkaPasvpikslegvevplsgvqtgksvlshkgqdYgiledsd....eeekggerlLlpdkkkd.....gyela...a.kpisrtlnise 85 
                   ++ e+Wl+  P s++++sl+ + +p++   + +++++  +++Y+++++s     ++e ++ +lL+p+  ++         +   +   ++r++++se
    CCD22264.1  56 KDEEIWLFSLPNSIDLSSLKTLPLPINN-DKSDNIIQILNKNYNVTQTSHksknNNEFSNLKLLVPSTDSKkdslkI---LsskDsMDFNRIFTLSE 148
                   689*****************66666666.7778899************998777666888999*9987777444431...24443489********* PP

                   --XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX CS
  RNA_polI_A34  86 vvqlpstdaepaasvvpkpprpqpkgLkmRFkPfGsgdgppgtigssseesegekekkkkpkakkkekkkkkkkaaeedeeeeapkkkkkkkkkkke 182
                   v+++p++d e++  ++p+++ pq+++L  +++P+G+ +++  t g+++++         ++  ++k+k+kk+++++++ e+++++kk+kk k+kkke
    CCD22264.1 149 VTEIPKIDIEKV--KLPRKDIPQLENLELKHFPTGYDSNDFITDGNDENT---------IE--NNKSKSKKRHGDDDDTENKKKKKKSKKDKSKKKE 232
                   ************..************************999997777777.........22..2333333333333333112222222222222222 PP

                   X CS
  RNA_polI_A34 183 k 183
                   k
    CCD22264.1 233 K 233
                   2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2210  (0.123264); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1693.21
//
Query:       CCD22265.1  [L=399]
Description: hypothetical protein NDAI_0A01070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-20   72.4   1.2    5.3e-20   70.9   0.1    2.2  2  TFA2_Winged_2  TFA2 Winged helix domain 2
    5.3e-16   58.7   0.7    1.4e-15   57.3   0.7    1.8  1  TFIIE_beta     TFIIE beta subunit core domain
  ------ inclusion threshold ------
      0.079   12.8   0.1       0.48   10.2   0.0    2.3  2  LexA_DNA_bind  LexA DNA binding domain


Domain annotation for each model (and alignments):
>> TFA2_Winged_2  TFA2 Winged helix domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.19   1.1e+03      10      26 ..     207     221 ..     204     242 .. 0.54
   2 !   70.9   0.1   8.9e-24   5.3e-20       2      61 .]     260     319 ..     259     319 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.19
  TFA2_Winged_2  10 LkkrpkaeGikvkdLkd 26 
                    ++k+   + + +++L+d
     CCD22265.1 207 IQKK--GKPVAMNELMD 221
                    5555..55556666665 PP

  == domain 2  score: 70.9 bits;  conditional E-value: 8.9e-24
  TFA2_Winged_2   2 nkeeLlalLkkrpkaeGikvkdLkdswpdveealeeLeaegeilvlrtkkdgqpkiVfwN 61 
                    +  eL +lL+++ + +Gi+ k+Lkd+wp+++e+++eLe+e +ilvlrtkkd +p++V++N
     CCD22265.1 260 SEGELIKLLRSQVTFKGISCKELKDGWPQCDETINELEEESKILVLRTKKDRTPRYVWYN 319
                    6789*******************************************************9 PP

>> TFIIE_beta  TFIIE beta subunit core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.7   2.3e-19   1.4e-15       2      68 .]     197     258 ..     196     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.3 bits;  conditional E-value: 2.3e-19
  TFIIE_beta   2 ftqLakiveylKkkdgplsleeIlsylslqldlsdknwllleaLknnpkieyDpkkgkfsfkPlyni 68 
                 +++L++++ey++kk++p+ ++e+++ylsl  + +d   +++e+Lk+ +ki++Dpkk+ f++ ++y++
  CCD22265.1 197 SSKLLWATEYIQKKGKPVAMNELMDYLSL--KPND---KVIELLKKLEKISFDPKKNAFKYVSTYDV 258
                 689*************************9..5445...9**************************97 PP

>> LexA_DNA_bind  LexA DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.45   2.7e+03      17      32 ..     118     133 ..     116     136 .. 0.81
   2 ?   10.2   0.0     8e-05      0.48      12      52 ..     200     240 ..     197     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.45
                    HHHHHHSS---HHHHH CS
  LexA_DNA_bind  17 asieetgypPsireia 32 
                    ++ ++tg pP ++ + 
     CCD22265.1 118 EHTDSTGSPPPRKKVK 133
                    57799*****998775 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 8e-05
                    HHHHHHHHHHHSS---HHHHHHHHTS-.HHHHHHHHHHHHH CS
  LexA_DNA_bind  12 ldlikasieetgypPsireiaralglkSpsaveehLkaLer 52 
                    l +  ++i+++g p  + e+++ l lk    v e Lk+Le+
     CCD22265.1 200 LLWATEYIQKKGKPVAMNELMDYLSLKPNDKVIELLKKLEK 240
                    567889*********************999*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3048.07
//
Query:       CCD22266.1  [L=255]
Description: hypothetical protein NDAI_0A01080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.2e-33  113.2  18.7    1.5e-29  102.8  18.7    2.5  1  RNA_pol_Rpb4    RNA polymerase Rpb4
     0.0049   16.3  11.0     0.0056   16.1  11.0    1.3  1  BUD22           BUD22
  ------ inclusion threshold ------
      0.066   13.2  14.1      0.076   13.0  14.1    1.1  1  TFIIA           Transcription factor IIA, alpha/beta subunit
       0.15   11.4   9.0        0.2   11.0   9.0    1.3  1  Rtf2            Rtf2 RING-finger
        1.5    7.7  12.4          2    7.4  12.4    1.3  1  SLC12           Solute carrier family 12
        1.9    7.3   9.4        2.4    7.0   9.4    1.2  1  XRN_M           Xrn1 helical domain
          4    6.2   7.9        5.8    5.6   7.9    1.2  1  Androgen_recep  Androgen receptor
        5.3    7.8  13.1       0.96   10.2   9.1    1.9  2  FYDLN_acid      Protein of unknown function (FYDLN_acid)
        7.9    5.7  15.1       0.38   10.1   9.7    1.5  2  FAM76           FAM76 protein
        8.6    6.1   7.8         18    5.1   7.8    1.5  1  DUF3464         Photosynthesis affected mutant 68


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb4  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8  18.7   8.6e-33   1.5e-29       1     122 [.      49     251 ..      49     252 .. 0.92

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 8.6e-33
                   EE-HHHHHHHHHHHHHHHHCHHHHHTC...................................................................... CS
  RNA_pol_Rpb4   1 lLsnsEvllvlkeeleerknkdkkese...................................................................... 27 
                   +L++sE++l++ke+l er++  +++ +                                                                      
    CCD22266.1  49 ALNLSEARLIIKEALLERRR-VFRKTQrlqqkkkeqkqhekeqqqqqqqqqqhdgtssdneninpgnennlvdhvngtgasnrnediidededddmd 144
                   699************99955.56555569999********************************************************999877665 PP

                   CCC..............CHHSHCHTCHHCHHHHHHHHHHHCTHHTTSSHHHHHHHHHHHTTSTSTHHHHHHHHHCSTSSHHHHHHHSTTGTTTSTSH CS
  RNA_pol_Rpb4  28 ddk..............isekeevkgnlnkilkktleyltnkfsrlkneekfnelvellksfeLtkaEklqlvnlkPesavelktlieeleerfede 110
                   d +              ++ +e+++g++nk lk+tleyltn fsr++++e+++++++llks++L+++E++ql++l++++a+e+ktl+++l ++++d+
    CCD22266.1 145 D-EfihtetrekeleslDALLEQTTGGNNKDLKNTLEYLTN-FSRFRDQETVSAVIQLLKSTGLHPFEIAQLGSLACDTADEAKTLVPSLTSKISDD 239
                   0.255555667789999************************.******************************************************* PP

                   HHHHHHHHHHHH CS
  RNA_pol_Rpb4 111 qleeiLdelkev 122
                   +le+iL+el+++
    CCD22266.1 240 ELERILKELSNL 251
                   **********97 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  11.0   3.1e-06    0.0056     131     225 ..      59     170 ..       4     240 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.1e-06
       BUD22 131 vkkllgiek...kkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsed............eekeeseddeeeeeededdedaee.deedeeaee 213
                 +k++l  +    +k+++ ++kkk++k+++k++++++++  +++ +  s+d+e+              + + +++++e+  ded++d+++ +  ++e++e
  CCD22266.1  59 IKEALLERRrvfRKTQRLQQKKKEQKQHEKEQQQQQQQ--QQQHDGTSSDNENinpgnennlvdhV-NGTGASNRNEDIIDEDEDDDMDdEFIHTETRE 154
                 44444433343333444444444444444444444333..55555666666666777788999952.44444444444444444444433566789999 PP

       BUD22 214 relaqydglla....s 225
                 +el+++d+ll+     
  CCD22266.1 155 KELESLDALLEqttgG 170
                 9999999977756552 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0  14.1   4.2e-05     0.076     198     363 ..      49     146 ..       2     246 .. 0.34

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.2e-05
       TFIIA 198 q............................qqq.qqqqqqqqqqqqvqqqqqeesqqaqqasqeqvagsqvessqtdgaedaleeespvlegelsaeeea 267
                                              q++ +q+q+++                                                           
  CCD22266.1  49 AlnlsearliikeallerrrvfrktqrlqQKKkEQKQHEK----------------------------------------------------------- 88 
                 0111111111211222111222211122111111111111........................................................... PP

       TFIIA 268 gaqkeelsreeidrireealkakelekeskkkkraeessladlseilqlDGagddsde..............eeeeeesdedsdsessddedeq.veED 351
                                                      ++++++++  q DG+  d+++                                +     +ED
  CCD22266.1  89 -------------------------------------EQQQQQQQQQQHDGTSSDNENinpgnennlvdhvnG-----------------TGASnRNED 133
                 .....................................111222222333332222222111111111111100.................111112222 PP

       TFIIA 352 plNSd.DDvdded 363
                  + +d DD  d++
  CCD22266.1 134 IIDEDeDDDMDDE 146
                 2222221111111 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   9.0   0.00011       0.2     157     222 ..      39     115 ..      10     176 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
        Rtf2 157 gkeykeedviplnptkeelellkarleeekakkkkkkkakkkkkakakgskaeaeaaskssseas...........e 222
                 +++ +ee++i ln +++ l +++a le ++  +k+++ ++kkk++k+++++++++++++++++ +           e
  CCD22266.1  39 NHQGQEEELIALNLSEARLIIKEALLERRRVFRKTQRLQQKKKEQKQHEKEQQQQQQQQQQHDGTssdneninpgnE 115
                 555678899********999999999999988777766655555555544444444443333332233334444441 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  12.4    0.0011         2     130     246 ..      76     194 ..       8     206 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0011
       SLC12 130 lqeeeeeeeekekkeaeesekeeeekkkakkkklleekskekeekekleekdsnlslseekk............eeekekkkekkkkkekkeklkkkek 216
                 lq             ++++e++++ek+++++++++++++ +++++e+++  ++n+ +++ +             e+e+++ + +  ++e++ek+ ++ +
  CCD22266.1  76 LQ-------------QKKKEQKQHEKEQQQQQQQQQQHDGTSSDNENINPGNENNLVDHVNGtgasnrnediidEDEDDDMDDEFIHTETREKELESLD 161
                 11.............111112222222222222222333333333333333333333333333443333333322222222333333333333333444 PP

       SLC12 217 slllkeaskee...kevleeitqfqkkqkkgti 246
                 +ll +++ +++   k++le +t+f++ ++++t+
  CCD22266.1 162 ALLEQTTGGNNkdlKNTLEYLTNFSRFRDQETV 194
                 444444444446778888888899888877776 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.4    0.0013       2.4      59     125 ..      49     132 ..      20     180 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0013
       XRN_M  59 evkldrveklvslvgkveekifrkrkeredrkekklakeeeaskedaa.neeaavaeeklseskvak.................s 125
                  ++l+ + +++++      ++frk ++ +++k++++++e+e+++++++ +++++++ ++++  +  +                 +
  CCD22266.1  49 ALNLSEARLIIKEALLERRRVFRKTQRLQQKKKEQKQHEKEQQQQQQQqQQHDGTSSDNENI-NPGNennlvdhvngtgasnrnE 132
                 6789999999999999999****999988777766665555544444404444444333322.2222233444443333333221 PP

>> Androgen_recep  Androgen receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.9    0.0032       5.8     189     215 ..      75     104 ..      59     131 .. 0.49

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0032
  Androgen_recep 189 llqqq...qqehhhqqhqhqqqqqqeaavv 215
                      lqq+   q++h+++q+q+qqqqqq+   +
      CCD22266.1  75 RLQQKkkeQKQHEKEQQQQQQQQQQHDGTS 104
                     222220002222222222222222222222 PP

>> FYDLN_acid  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       4.8   8.6e+03      52      61 ..      19      22 ..       4      46 .. 0.51
   2 ?   10.2   9.1   0.00053      0.96      45     100 ..      74     143 ..      56     167 .. 0.44

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.8
  FYDLN_acid 52 eeakkkkeee 61
                ee+      e
  CCD22266.1 19 EEE------E 22
                111......1 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00053
  FYDLN_acid  45 raaaaeaeeakkkkeeeedeedeeeeedvsdedadeeeee.....................dddddvdleedddddv 100
                 ++ +++++e+ k++e+e++++++++++++  +  d+   e                      ++d   ++ed+ddd+
  CCD22266.1  74 QRLQQKKKEQ-KQHEKEQQQQQQQQQQHDG-TSSDN---EninpgnennlvdhvngtgasnRNED--IIDEDEDDDM 143
                 2222222211.1111111111111111111.11111...12345666677777777776552222..2222222221 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       1.6   2.9e+03     262     285 ..      10      33 ..       4      45 .. 0.69
   2 ?   10.1   9.7   0.00021      0.38     149     237 ..      73     166 ..      50     192 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.6
       FAM76 262 elreklkelekeakekieklekki 285
                 + r+++k++e+e ++ + +l ++ 
  CCD22266.1  10 TSRRRIKKVEEEENAATLQLGHEF 33 
                 567777777777777777776654 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00021
       FAM76 149 skkkkskskkskkskekskekkaskkkskkh.kkrssrlevskleeek.......laeekesnetskksldsnssdhlvavtqLkeeiaslkkqleq 237
                 +++ ++k+k++k+++   ke++++++++++h  ++s + ++   +e++       +  ++ +++ + +  d  + d++++ +  ++e++sl   leq
  CCD22266.1  73 TQRLQQKKKEQKQHE---KEQQQQQQQQQQHdGTSSDNENINPGNENNlvdhvngTGASNRNEDIIDEDEDDDMDDEFIHTETREKELESLDALLEQ 166
                 111111111122211...1222222222222011111122222222222222221222233333344478899999999999999999999887776 PP

>> DUF3464  Photosynthesis affected mutant 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   7.8    0.0099        18       4      39 ..      72     107 ..      64     123 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0099
     DUF3464   4 krlpfepkkkrkkkpkkkkkskkakkeekekakeee 39 
                 k+  +++kkk++k+++k+++++++++++++ +++++
  CCD22266.1  72 KTQRLQQKKKEQKQHEKEQQQQQQQQQQHDGTSSDN 107
                 333344444444444443333333333332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4050  (0.225891); expected 358.6 (0.02)
Passed bias filter:                     1123  (0.062636); expected 358.6 (0.02)
Passed Vit filter:                       191  (0.0106531); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.73u 0.36s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 1610.05
//
Query:       CCD22267.1  [L=366]
Description: hypothetical protein NDAI_0A01090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-73  246.8  15.1    5.3e-57  193.5  10.0    2.1  2  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   0.2   1.6e-19   2.9e-15      11     106 ..      58     149 ..      44     154 .. 0.69
   2 !  193.5  10.0     3e-61   5.3e-57     179     325 .]     156     314 ..     151     314 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 1.6e-19
  Glyco_transf_15  11 knkeklkkllkekanvknkakekstlefkpkslvnrgrkPie.denenAtllalvrnselakilrsikkvekrFnkkfnYpyvfindepftekf 103
                       ++e+ ++l k +a+ ++++ ++   + + ++ +n g       + enAtll+lvrn el+  l+s++++e+rFn+k++Y+++f+nd pft++f
       CCD22267.1  58 FDHERRRNLYK-RAKLSSNTYND---NLMNEDDDN-GDTAFGgIQRENATLLMLVRNWELNAALESMRSLEDRFNHKYHYDWTFLNDVPFTDEF 146
                      45555555552.22322222222...233333333.33333336778**********************************************9 PP

  Glyco_transf_15 104 kek 106
                       e 
       CCD22267.1 147 MEX 149
                      875 PP

  == domain 2  score: 193.5 bits;  conditional E-value: 3e-61
  Glyco_transf_15 179 wRvePdiklycdieyDvfkymkdekkiygFtlslkeieetiktlWdstkkflkenkefie.eknslsflsdddqd...........tynlCeFw 260
                      +RveP+++ ycd  yD fk m+ ++k+y F++s++e+e+ti++lW+++  ++ ++++ i+ e+ns++fl+dd+             +ynlC+Fw
       CCD22267.1 156 FRVEPNVQYYCDFPYDPFKVMRVNDKKYRFVISMYEYEDTIPSLWENVEMYIMNYENDIDmETNSIQFLTDDEVIgkkltlvasatDYNLCHFW 249
                      7****************************************************9999998799******998866789**************** PP

  Glyco_transf_15 261 snfeigdldffrseayekfFeylDskGgffYerWgdapvhsiavslllpkdkihffedigyshdp 325
                      +nfeigdl+ffrse+y++fF++lDskGgf+YerWgdapvhsiavslll+ ++i +f+++gy+hdp
       CCD22267.1 250 TNFEIGDLNFFRSEKYNRFFDFLDSKGGFYYERWGDAPVHSIAVSLLLKSNEIIHFDELGYMHDP 314
                      ***************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2732.81
//
Query:       CCD22268.1  [L=475]
Description: hypothetical protein NDAI_0A01100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-11   43.2   1.6    1.1e-10   42.4   1.6    1.4  1  Metallophos    Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.069   13.7   0.0       0.16   12.5   0.0    1.6  1  GTA_holin_3TM  Holin of 3TMs, for gene-transfer release
        0.3   11.4   7.0          3    8.2   0.1    2.6  3  Orf78          Orf78 (ac78)


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   1.6   1.8e-14   1.1e-10       1     204 []      95     325 ..      95     325 .. 0.67

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 1.8e-14
                  EEEEEEESBTB......................TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS...HHHHHHHHHHHHHHHH......TSEE CS
  Metallophos   1 lrilvigDlHl......................algggqlddllkllddllreekpdlvllaGDlvdrg...dlekellellaalvky......pipv 67 
                  +++++++D+++                      ++++ ++ ++  +    l++ + +++l  GDl+d+g   d ++ +l+ ++++ k       +  v
   CCD22268.1  95 HKVALFADPQImdahsypgrpvivnyltrvmldHYHERNWKYVHYY----LDP-DTNFFL--GDLFDGGrywDDDY-WLKEYTRFNKIfpkkqsRMTV 184
                  699*******999888877777777777755544444444444444....455.899999..*********95555.555555555555666667999 PP

                  EEEC-TTS.CHHH.HHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEE CS
  Metallophos  68 ylllGNHe.gfee.ellnkygylgifsepwrsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepgdewlkdlekrekadwv 163
                  + l+GNH+ gf +  ++++ + ++++ ++   +++v+n+  + +      +++ l             l+s + e +     +++l+++   ++  ++
   CCD22268.1 185 MSLPGNHDiGFGDtVIESSLERFTTYFGDPSAYVDVGNHTFVLV------DTISLSDK----------LNSNVSEVP-----KKFLNEFAMGSHPMTK 261
                  ********976665555555555555445555555555555555......44444444..........333333333.....8899998888888899 PP

                  EEEESSESS.......................CSSSCSCCHHHHHHHHHHTTESEEEEESSSSE CS
  Metallophos 164 ivlgHsply.......................rgsgylfgdealedllkkygvdlvisGHtHvy 204
                  i+l+H+pl+                       ++++ + + e   ++l k ++ l +sG++H y
   CCD22268.1 262 ILLTHVPLWrnanqqkcgslreskkafpiqkgDQYQTVIDLELSQEVLSKIQPSLLFSGDDHDY 325
                  99999*9998888877777777776666666666666666666668899999999999999986 PP

>> GTA_holin_3TM  Holin of 3TMs, for gene-transfer release
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.6e-05      0.16      38     100 ..      19      80 ..       4      89 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.6e-05
  GTA_holin_3TM  38 efaeadreleqleaqleimkaEaasddgfnrrwRPllgyvtlalllwaivldPllaaaialgl 100
                    e +e+ ++ +++e+ + ++++E ++d +++  wR ++++ t++lll+  + + ++++ ++  +
     CCD22268.1  19 EKEERSEMFADIEKGIPVNNIEIQNDGKVRVYWRYIVILFTMWLLLIH-YYESIVVKRAMRKC 80 
                    445557788899***********************************9.77777777777666 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0005         3      27      92 ..      10      75 ..       3      85 .. 0.48
   2 ?   -3.9   0.1       2.9   1.7e+04      62      77 ..     393     408 ..     374     411 .. 0.59
   3 ?    6.6   0.8    0.0016       9.4      64      89 ..     450     475 .]     414     475 .] 0.68

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0005
       Orf78 27 dnddndkaenkkekksaaeknditekesn......aaekaqalnillisllavvcvlvllyviyYfvilrer 92
                +n++++++e+k+e++++ ++ +             + ++ ++  + + +++ ++++ +ll + yY  i+ +r
  CCD22268.1 10 NNNNKKRDEEKEERSEMFADIEK-----GipvnniEIQNDGKVRVYWRYIVILFTMWLLL-IHYYESIVVKR 75
                12222222222222222222222.....13444456677777777787777777776665.45554444333 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.9
       Orf78  62 alnillisllavvcvl 77 
                 ++ ++ i+ l+++  +
  CCD22268.1 393 MYLLMTIVSLSIFGYI 408
                 4444444444444433 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0016
       Orf78  64 nillisllavvcvlvllyviyYfvil 89 
                 ++  i  l++++++vl+   yY+v++
  CCD22268.1 450 KVSCILNLSILSLMVLILFYYYYVVI 475
                 44455667888888888888999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3357.95
//
Query:       CCD22269.1  [L=526]
Description: hypothetical protein NDAI_0A01110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-32  110.9   3.2    1.1e-31  108.8   3.2    2.2  1  SAS4       Something about silencing, SAS, complex subunit 4
  ------ inclusion threshold ------
       0.46   10.9   5.4       0.12   12.7   1.3    2.2  2  Corazonin  Pro-corazonin


Domain annotation for each model (and alignments):
>> SAS4  Something about silencing, SAS, complex subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   3.2   1.2e-35   1.1e-31       1      95 [.     162     256 ..     162     259 .. 0.98

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 1.2e-35
        SAS4   1 DpLsDklYekaHkrmerqEkrmrniekeraesEadrlerllekLqgqdwlrvlgkitkindpkdkkelerkreltikeieallekferwkkeekk 95 
                 D L+D+lY+++Hkrm r+E+rm++++++++e+Ea+rl+ + ekL++ +w ++l+k+tkindp+d++e++rkr +t++ ie++lekf+++k++++ 
  CCD22269.1 162 DVLPDSLYTNFHKRMLRHENRMIDQDIIQSENEAERLTLINEKLDMIMWPTILQKVTKINDPTDDDEMTRKRAQTKECIESMLEKFHSMKRRSNG 256
                 89*****************************************************************************************9875 PP

>> Corazonin  Pro-corazonin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.3   1.4e-05      0.12      22     118 ..      30     131 ..      16     143 .. 0.70
   2 ?   -2.0   0.2      0.48   4.3e+03      70      73 ..     218     221 ..     155     258 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
   Corazonin  22 lsnghlhrlndlglsdlydlqdkssdrrLerCLsqLqrfvlnrllhrsvalnlaredsdsedsseerslnln.....nnnnvlnslspkkrnhqsnelf 115
                 l    + ++nd ++ dl+d++  + ++   r Ls Lq++ + +  +   +  l++  s se+sse +  + +      +++ + + ++++r ++s  l 
  CCD22269.1  30 LRSFKNTGKNDDSIDDLFDFDSDEFEINPTRKLSLLQHVTGMNHKKIIKKSRLQQRVSMSEESSEPTVDREEadpllHQQRLEGKEQKQRRGKKSASLI 128
                 455568899*****************************9987766666666666666666655555444444334444666666666677777777776 PP

   Corazonin 116 Eel 118
                  ++
  CCD22269.1 129 TAV 131
                 665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.48
   Corazonin  70 valn 73 
                 ++ n
  CCD22269.1 218 TKIN 221
                 3222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1276  (0.0711696); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3920.97
//
Query:       CCD22270.1  [L=1485]
Description: hypothetical protein NDAI_0A01120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-35  120.2   3.3      6e-34  117.7   0.1    3.5  4  Nipped-B_C    Sister chromatid cohesion C-terminus
    8.8e-16   57.9   1.4      1e-13   51.3   1.1    2.9  2  Cohesin_HEAT  HEAT repeat associated with sister chromatid co
  ------ inclusion threshold ------
      0.021   14.7   2.6        6.7    6.6   0.1    3.5  3  Alba          Alba
       0.23   11.8   0.7         96    3.7   0.0    4.2  4  HEAT          HEAT repeat
          4    7.6  10.0          9    6.5   0.5    3.6  4  DUF1798       Bacterial domain of unknown function (DUF1798)


Domain annotation for each model (and alignments):
>> Nipped-B_C  Sister chromatid cohesion C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1       0.2   7.3e+02     137     184 ..     585     634 ..     481     638 .. 0.81
   2 ?   -0.6   0.0       0.3   1.1e+03       7      36 ..     699     728 ..     695     738 .. 0.84
   3 ?   -2.5   0.0       1.2   4.2e+03      59      82 ..    1113    1136 ..    1110    1138 .. 0.90
   4 !  117.7   0.1   1.7e-37     6e-34       1     188 [.    1206    1385 ..    1206    1387 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.2
                 HHHHHHHH.H..HTSSTT--HHHHHHHHHHHHHHHHCS--EEHHHHHHHH CS
  Nipped-B_C 137 lsslvklfdf..esesdaesekshlsfllfladnLahfpYqtqdEvlyvi 184
                   +l+k+f+   ++ +  e+ ++ l+++ f +d  + fpY    E+++++
  CCD22270.1 585 CDNLIKIFNYpeKLPQLLEKFQDCLEYIKFSSDKPSAFPYFWNLELITLL 634
                 56888888558766666788899999999**********99888888876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.3
                 HHHHHHHHHHTSS-HHHHHHHHHHHHHHHH CS
  Nipped-B_C   7 rYlkdilecalspdsqvrlaAlevvslilr 36 
                  Ylk il +  +   ++r +A++++s+ ++
  CCD22270.1 699 PYLKLILSFLGKDRIKLRSTAIKCLSMLAN 728
                 599999999999999999999999988765 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.2
                  HHHHHHHHHHHHHHHHSHHHHHHT CS
  Nipped-B_C   59 sirsrAdkllqeleekyegflesk 82  
                   ir +A+k l++l+  y+++++sk
  CCD22270.1 1113 IIRRIAIKNLTKLCGSYPKLFNSK 1136
                  6999****************9998 PP

  == domain 4  score: 117.7 bits;  conditional E-value: 1.7e-37
                  HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHT-S-GGGTHHHHHHHTT-SSHHHHHHHHHHHHHHHHHSHHHHHHTHHHHHHHHHHHHHH. CS
  Nipped-B_C    1 asavvqrYlkdilecalspdsqvrlaAlevvslilrqGLvhPvqcvptLialetdpdesirsrAdkllqeleekyegfleskalqgirlafqlqkki 97  
                  +sa+v+r+lk+il++++ ++ + +l+A+++++lil++G+++P++++p +ial ++++++++++ +k+l++l+ekye+++ s +++g+++a+ +++  
  CCD22270.1 1206 CSALVSRFLKNILDICTGSNIKSSLVAVRLLELILQYGYTNPSHAIPIIIALVSSNNQYMSHISIKILKDLFEKYETMVFSGMSKGVQQAIVYSRV- 1301
                  89**********************************************************************************************. PP

                  ..H-TTTG.......GG---HHHHHHHHH--SHHHHHHHHHHHHHHH.H...HTSSTT--HHHHHHHHHHHHHHHHCS--EEHHHHHHHHHHH. CS
  Nipped-B_C   98 asssgaklrrsasetesptallsslysllrsnkqsrrkflsslvklfdf...esesdaesekshlsfllfladnLahfpYqtqdEvlyvihhid 188 
                    + g+ l        ++  +l++l +++   k++  kf++++ k++ +         e ++++ + ++f++ n+a++++++q +++ +++ +d
  CCD22270.1 1302 --LMGDDL-------YKNDLFLRKLGTIVGIGKKYGPKFIKTIKKVMMSllnG-IVGVEIDNDTKDSICFMTSNIANLQFNSQFDLISLLKPMD 1385
                  ..888888.......799****************************9558852.345677899999***********************99888 PP

>> Cohesin_HEAT  HEAT repeat associated with sister chromatid cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   1.1   2.8e-17     1e-13       1      42 []     721     762 ..     721     762 .. 0.99
   2 ?    3.6   0.0     0.023        83      25      39 ..     777     791 ..     770     792 .. 0.83

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 2.8e-17
                   HHHHHHHHH-GGGGGSHHHHHHHHHHHHSS-HHHHHHHHHHH CS
  Cohesin_HEAT   1 kalsslvekdpsiLsapevldtiarrltDsspsVRdAaLell 42 
                   k+ls+l++kdp iL +++v++ti+ rl+Dss+sV+dA+L+l+
    CCD22270.1 721 KCLSMLANKDPVILQSDSVKETIQQRLNDSSASVKDAILDLV 762
                   9***************************************97 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.023
                   HHHHSS-HHHHHHHH CS
  Cohesin_HEAT  25 rrltDsspsVRdAaL 39 
                   + + D+s+sVR  +L
    CCD22270.1 777 ANFADESISVRRHVL 791
                   5589*******9987 PP

>> Alba  Alba
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0019       6.7       1      23 [.    1084    1106 ..    1084    1119 .. 0.87
   2 ?    6.1   0.1    0.0026       9.5       5      43 ..    1258    1296 ..    1255    1302 .. 0.84
   3 ?   -3.3   0.0       2.3   8.4e+03      10      31 ..    1330    1360 ..    1326    1361 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0019
                  CEEEE-STS-HHHHHHHHHHHHT CS
        Alba    1 neiyVsskspimsyvkralklLs 23  
                  +++yVs + +i  yv ++l  Ls
  CCD22270.1 1084 KVMYVSENESIYEYVTKCLLVLS 1106
                  69****************99883 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0026
                  E-STS-HHHHH..HHHHHHHTHTTESEEEEEEETTHHHHHH CS
        Alba    5 Vsskspimsyv..kralklLsnkkeeeVvlkatGraIskAv 43  
                  Vss+ ++ms++  k ++ l+  +k+e+ v++++ + ++ A+
  CCD22270.1 1258 VSSNNQYMSHIsiKILKDLF--EKYETMVFSGMSKGVQQAI 1296
                  88899999975226788888..******************9 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.3
                  -HHHHHHHHHHHH.........THTTESEEE CS
        Alba   10 pimsyvkralklL.........snkkeeeVv 31  
                  ++ + +k+++  L          n+++++++
  CCD22270.1 1330 KFIKTIKKVMMSLlngivgveiDNDTKDSIC 1360
                  7889999999999788888888777787776 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.049   1.8e+02       5      28 ..     704     727 ..     701     729 .. 0.77
   2 ?    3.7   0.0     0.027        96       4      21 ..     742     759 ..     740     763 .. 0.87
   3 ?   -3.2   0.0       4.4   1.6e+04       9      18 ..     779     788 ..     775     791 .. 0.82
   4 ?   -1.0   0.0      0.82     3e+03      16      28 ..    1114    1126 ..    1112    1129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.049
                 HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgala 28 
                 +l+ l  +  + R++A+k+L  la
  CCD22270.1 704 ILSFLGKDRIKLRSTAIKCLSMLA 727
                 566666667789********9998 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.027
                 HHHHHHT-SSHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAa 21 
                 ++++ l+D+s++V +a +
  CCD22270.1 742 TIQQRLNDSSASVKDAIL 759
                 6899**********9976 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.4
                 HT-SSHHHHH CS
        HEAT   9 lsDpspeVRe 18 
                   D+s +VR+
  CCD22270.1 779 FADESISVRR 788
                 67******96 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.82
                  HHHHHHHHHHHHH CS
        HEAT   16 VReaAakaLgala 28  
                  +R+ A+k+L++l+
  CCD22270.1 1114 IRRIAIKNLTKLC 1126
                  799********99 PP

>> DUF1798  Bacterial domain of unknown function (DUF1798)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.5    0.0025         9      37      79 ..      97     139 ..      92     150 .. 0.89
   2 ?    5.7   0.2    0.0045        16      39      89 ..     463     511 ..     424     518 .. 0.68
   3 ?   -2.6   0.0       1.6   5.9e+03      63      82 ..    1143    1162 ..    1136    1165 .. 0.84
   4 ?   -3.1   0.0       2.4   8.6e+03      34      49 ..    1387    1402 ..    1373    1418 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHHHHHHHHS--SSS-HHHHHHHHHHHHHHHHH CS
     DUF1798  37 evkelldewkelalewvkkerpkylheeqieataenleklvvq 79 
                 +v+   +++++la++ +++++p+ + e+q ++t++ ++k++++
  CCD22270.1  97 SVQLITNNLSPLATKCLQETNPNIIIEKQRTSTKQQVQKTFMH 139
                 677788999*****************************99886 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0045
                 HHHHHHHHHHHHHHHHHS--SSS-HHH.HHHHHHHHHHHHHHHHH--S-HHH CS
     DUF1798  39 kelldewkelalewvkkerpkylheeq.ieataenleklvvqsFfpktskkr 89 
                   +++ w e++++++++    ++++ q +++ +e+++ ++++ F ++t k r
  CCD22270.1 463 AMKMADWDEESIRLLEQ---INMKQLQtVHSYVEHINSTILKQFLENTTKYR 511
                 457899*********99...4454444267889************9998765 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.6
                  HHHHHHHHHHHHHHHHHHHH CS
     DUF1798   63 eeqieataenleklvvqsFf 82  
                   + +++++  ++ ++++sF+
  CCD22270.1 1143 DKEFNSAHLDIKLVILESFY 1162
                  5678899999*********9 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2.4
                  HHHHHHHHHHHHHHHH CS
     DUF1798   34 fadevkelldewkela 49  
                   a+++ke ++ w    
  CCD22270.1 1387 VAEQMKENIQDWLATN 1402
                  4666777777776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.31s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 10010.97
//
Query:       CCD22271.1  [L=478]
Description: hypothetical protein NDAI_0A01130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-16   58.3   2.8      8e-15   55.3   2.8    2.6  1  PXA       PXA domain


Domain annotation for each model (and alignments):
>> PXA  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   2.8   4.5e-19     8e-15       5     174 ..      93     246 ..      89     254 .. 0.67

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 4.5e-19
         PXA   5 deelhellalilrdfVlsWY.ski.ssdeeFptevrsilrsviralanrlkk..vDlaqllltrlldlltshlrdyrqaeekvkskkaeeesdldlaak 99 
                 + ++++++alil++fVl WY  ki ++de+F+ e+ ++++++i+ + + +++  +D+ +ll ++++ +l +h++++r+++ k++++ +   ++ +l ++
  CCD22271.1  93 ELQINAICALILQNFVLNWYgVKIpTTDETFLIEMFNLIQNLIQYVTRQIRDdsIDFEALLADDIPVILSRHIEAIRKSQLKTTENID---DSSTLYKE 188
                 579*****************66**877***********************7558***********************99988877543...33333333 PP

         PXA 100 ffalephpalsavlrdieeskeaelaylrslverlLslllppedlesetvrtlvreilanvvlkplleklsdPdf 174
                 +++    + ls    d        ++   + +++ +++l++ +d +s+  ++++  ++ ++ ++++l++l++P +
  CCD22271.1 189 YRK----IVLS----D--------SDKYPEQITNFIKSLIEGSD-SSTLQSSFLDSLFNELLFGRILDSLTEPYY 246
                 333....3333....1........12222222233333333333.333334444444444444444555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3539.97
//
Query:       CCD22272.1  [L=169]
Description: hypothetical protein NDAI_0A01140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0021   18.5   0.4      0.003   18.0   0.4    1.4  1  PCI       PCI domain


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.4   1.7e-07     0.003      37     101 ..      54     117 ..       9     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.7e-07
                 HHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSH.HHHHHHHHHHHHTTSSSEEEETTTTEE CS
         PCI  37 qllesLekkvrerllrqvskiyssislerlaklldlsv.devEkilvklIrdgeirakidqesgiv 101
                 +l +s  +k+r+ +++++s +y+ is++ + k +++++ +++E++l++l  ++++++ id++ + v
  CCD22272.1  54 DLTSSMIDKLRKLTIISLSAKYRYISYDFIRKECEMDSsNDIEEYLIQL--QDFFQMEIDSVGQQV 117
                 3778888999****************************9*********8..999999999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1218.26
//
Query:       CCD22273.1  [L=183]
Description: hypothetical protein NDAI_0A01150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-48  164.1   0.0    1.6e-48  163.8   0.0    1.1  1  CybS      CybS, succinate dehydrogenase cytochrome B small su


Domain annotation for each model (and alignments):
>> CybS  CybS, succinate dehydrogenase cytochrome B small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8   0.0   8.7e-53   1.6e-48       3     133 .]      35     166 ..      33     166 .. 0.98

  Alignments for each domain:
  == domain 1  score: 163.8 bits;  conditional E-value: 8.7e-53
        CybS   3 klklipqppggvsgtvndaakvpepsksegsyhwtleRivavglvpltvvplva.gslspvlDavlavlllihshlgfesciiDYipkrvygklhklah 100
                 +l+ +pq+ ggv+g+ nda+ +p+ +k+egsyhw le+++av+ +pl++v+ v+ g ls++ D++l+v ll++++++f+sci+DYi+krvygk+h++a 
  CCD22273.1  35 FLPVLPQKAGGVTGSPNDAYIPPKMNKFEGSYHWWLEKVFAVTSLPLVTVAAVTsGPLSTTCDSLLSVGLLGYCYMEFHSCITDYISKRVYGKYHNYAL 133
                 7889*************************************************98889***************************************** PP

        CybS 101 ylLalgtvlslvGlYeletednGltelvkklws 133
                 ylL +g+v+sl+G+Y+lete+nG+t+lvk  w+
  CCD22273.1 134 YLLGAGSVVSLFGIYKLETENNGITGLVKGWWK 166
                 *****************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1336.49
//
Query:       CCD22274.1  [L=216]
Description: hypothetical protein NDAI_0A01160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-44  149.3   0.0      7e-44  148.9   0.0    1.2  1  UQ_con    Ubiquitin-conjugating enzyme
    1.3e-27   95.3   1.6    2.3e-27   94.6   1.6    1.4  1  UBA_3     Fungal ubiquitin-associated domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.9   0.0   7.8e-48     7e-44       1     137 [.       6     142 ..       6     145 .. 0.97

  Alignments for each domain:
  == domain 1  score: 148.9 bits;  conditional E-value: 7.8e-48
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TTSBB-CGGGSTTT--TTSHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ksGevcldiLkeekWspaltle 98 
                 r++kel+ +++++   i  + v+++++ ++k+ ++gp++tpYegg F +++e+p +YP+kpPk+kf tk++HPn++  +G++cldiLk+  Wsp++tl+
  CCD22274.1   6 RIMKELQAVKDDPTAKIGLEFVNESDIHHLKGSFFGPPGTPYEGGQFIIDIEVPMEYPFKPPKMKFDTKVYHPNISsVTGAICLDILKNA-WSPVITLK 103
                 799*************************************************************************9***********55.******** PP

                 HHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHH CS
      UQ_con  99 svllsiqsLlaepnpesplnkeaakllkkdreeykkkvk 137
                 s+l+s+q+Ll++p+p++p ++e+a+++ kdr+ ++k++ 
  CCD22274.1 104 SALISLQALLQSPEPNDPQDAEVAQHYLKDRASFDKTAA 142
                 ***********************************9985 PP

>> UBA_3  Fungal ubiquitin-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   1.6   2.6e-31   2.3e-27       1      55 []     162     216 .]     162     216 .] 0.99

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 2.6e-31
                 S-SS----SHHHHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT- CS
       UBA_3   1 deaqlyGidrdlVdefvsqGFekdkvievLkrLgiksldpednetankileELLk 55 
                 dea+lyGid d+V+ef+sqGFek+k++e+L+rLgik ldp+dn t n+i+eELLk
  CCD22274.1 162 DEAELYGIDADAVQEFESQGFEKQKIVEILRRLGIKRLDPNDNDTINRIIEELLK 216
                 9*****************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1586.58
//
Query:       CCD22275.1  [L=844]
Description: hypothetical protein NDAI_0A01170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-42  144.6   3.2    1.9e-42  144.6   3.2    3.4  3  Ada3      Histone acetyltransferases subunit 3
  ------ inclusion threshold ------
        2.5    7.4   6.6        5.6    6.3   6.6    1.5  1  TMEM43    Transmembrane protein 43


Domain annotation for each model (and alignments):
>> Ada3  Histone acetyltransferases subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.5       1.7   1.5e+04      94     109 ..      16      33 ..       9      47 .. 0.48
   2 ?   -9.0   9.6         2   1.8e+04     129     129 ..     156     156 ..      80     202 .. 0.57
   3 !  144.6   3.2   2.1e-46   1.9e-42       1     132 []     622     784 ..     622     784 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.7
        Ada3  94 trtlkkkkkkkrsga..a 109
                 +r ++ +k+++r g+   
  CCD22275.1  16 QRDHQAQKQQQRDGKepI 33 
                 344444444444443441 PP

  == domain 2  score: -9.0 bits;  conditional E-value: 2
        Ada3 129 l 129
                  
  CCD22275.1 156 F 156
                 0 PP

  == domain 3  score: 144.6 bits;  conditional E-value: 2.1e-46
        Ada3   1 ldyaqleeRlkqELreiGil...................epeedadkydgredDevaaeLrrlqaeLrevsliNgarkarLlelvkermayqeyqtile 80 
                 ldy ++eeRlk+EL+++Gi+                   +++++ d+++gredDe++aeLr+lq++L++v+l+N++rk+ L +++++++a+qey++il+
  CCD22275.1 622 LDYPTFEERLKRELKYVGIYmnipkdensttttnsnissSTNDELDWIHGREDDEISAELRELQNSLKQVTLKNQKRKEALKPIIERQLAWQEYESILD 720
                 69**********************************9754455555***************************************************** PP

        Ada3  81 dlDkqvqqaYlKrtrtlkkkkkkkrsga............aaaaaaagaarpgigdalralmer 132
                 dl kqv+qaY+Kr+r +kk+kk++ sg+            ++++a++ a++++++++l++l+e+
  CCD22275.1 721 DLAKQVDQAYIKRIRVPKKRKKHHVSGSsatansstsgssTGGTASQIAQQKAANSSLKSLLEK 784
                 ***********************999999*********99999999999************997 PP

>> TMEM43  Transmembrane protein 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.6   0.00062       5.6      36     121 ..     121     207 ..     118     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00062
      TMEM43  36 lidSseFkepegheNpssmpvesetqvaedvkvGaykLskelvekinaeeeltldsqsaqeiat.skeqknvklhggyiYfgkspqe 121
                 +++ +++++++  +N+++++ + +t  a++ k+ ++ L+k+ + ++ +e+e + ++q ++e+++ s++++ v+ ++++iY +++p++
  CCD22275.1 121 IQNDKNNEKKSITNNNNNIEKTTTTTAATTKKIKQFDLPKAPKAQLLKEQEKQKQKQIEEEQQRkSNAESAVNDDEEVIYDKEKPSS 207
                 567778888888889999999*****************************************9889999999999999998887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3288  (0.18339); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.19u 0.33s 00:00:01.52 Elapsed: 00:00:00.53
# Mc/sec: 4824.85
//
Query:       CCD22276.1  [L=334]
Description: hypothetical protein NDAI_0A01180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-48  164.3   7.9    1.1e-47  161.6   3.9    2.2  2  MRP-S28   Mitochondrial ribosomal subunit protein
  ------ inclusion threshold ------
        0.3   11.4   1.3        3.9    7.8   0.5    2.6  2  VPS11_C   Vacuolar protein sorting protein 11 C terminal


Domain annotation for each model (and alignments):
>> MRP-S28  Mitochondrial ribosomal subunit protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.1    0.0041        37      59      94 ..      61      96 ..      19     130 .. 0.77
   2 !  161.6   3.9   1.3e-51   1.1e-47       1     126 [.     175     304 ..     175     305 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0041
     MRP-S28 59 etdviklsserfesaaqNkrylsdilekLlkeakdl 94
                 + +++l  er    a N++ + + l++Ll++++ +
  CCD22276.1 61 PKRILQLYKERVGRLAHNYKPCKEELNALLTTSEFT 96
                4669999************************99864 PP

  == domain 2  score: 161.6 bits;  conditional E-value: 1.3e-51
     MRP-S28   1 efkppke.eaplrfrytsylgee.hpasrkvvlevkvadLkleekqkhklklLagprynpetdviklsserfesaaqNkrylsdilekLlkeakdl.kd 96 
                 ++k+p+  ++p+ ++ytsy+gee hp+srkvvl++k ++L+l+ekq+hk+klLa++ry++ td++k+s++rf++a+qN ryl+di+++Ll+e+kdl kd
  CCD22276.1 175 PYKRPDLtKNPIIYKYTSYIGEEnHPHSRKVVLSCKCKELPLNEKQLHKFKLLAKTRYDHITDIFKMSTDRFSEATQNSRYLHDIFQRLLNESKDLsKD 273
                 6999988799***********9889************************************************************************** PP

     MRP-S28  97 dfeDvpldtrhlkakkekkr.srkaefpeeW 126
                 df+Dvpldtrh++ak+ +k+  + ++fp+eW
  CCD22276.1 274 DFSDVPLDTRHTIAKNLRKKrRHAYKFPKEW 304
                 ****************999834556****** PP

>> VPS11_C  Vacuolar protein sorting protein 11 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.039   3.5e+02      15      33 ..     229     247 ..     225     248 .. 0.88
   2 ?    7.8   0.5   0.00044       3.9      12      30 ..     251     269 ..     247     278 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.039
     VPS11_C  15 adrhdlFkaaLeeseDrFk 33 
                 ++r+d  ++  + s+DrF+
  CCD22276.1 229 KTRYDHITDIFKMSTDRFS 247
                 7889999999999*****7 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00044
     VPS11_C  12 eesadrhdlFkaaLeeseD 30 
                 ++s   hd+F+  L+es+D
  CCD22276.1 251 QNSRYLHDIFQRLLNESKD 269
                 566778**********655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2387.54
//
Query:       CCD22277.1  [L=264]
Description: hypothetical protein NDAI_0A01190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-11   43.8   4.0    2.6e-11   43.8   4.0    1.9  2  HMG_box          HMG (high mobility group) box
    1.1e-07   32.3   2.9    1.1e-07   32.3   2.9    1.9  2  HMG_box_2        HMG-box domain
  ------ inclusion threshold ------
      0.013   14.6   1.5      0.054   12.6   1.5    2.2  1  DUF3086          Protein of unknown function (DUF3086)
      0.043   12.8   1.0      0.069   12.1   1.0    1.3  1  Transketolase_N  Transketolase, thiamine diphosphate binding 
        2.2    8.5  17.5        2.1    8.6  15.8    1.9  2  AP3D1            AP-3 complex subunit delta-1


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   4.0   7.2e-15   2.6e-11       1      68 [.     117     189 ..     117     190 .. 0.95
   2 ?   -5.1   3.0         5   1.8e+04      47      52 ..     246     251 ..     241     259 .. 0.41

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 7.2e-15
                 --SS--HHHHHHHHHHHHHHHHS.....TTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaen.....PelknaeiskklgekWkalseeeKkkYeekaekekaryekekpey 68 
                 pk+pl+ ff +s   r++l+ e      P l+ +ei++++++kWk+l++ eK+k+++++  e + y+kek++y
  CCD22277.1 117 PKKPLTVFFAYSAYVRQELRDERqrnglPPLSSTEITQEISKKWKELNDTEKEKWKQAYTVELEHYQKEKQKY 189
                 8******************99965556699*****************************************99 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 5
                 HHHHHH CS
     HMG_box  47 KkkYee 52 
                 Kkk ++
  CCD22277.1 246 KKKKKK 251
                 222222 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   2.9   3.1e-11   1.1e-07       1      72 [.     117     189 ..     114     191 .. 0.85
   2 ?   -3.3   0.9       4.2   1.5e+04      61      62 ..     249     250 ..     239     261 .. 0.47

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 3.1e-11
                 ---.-SS--HHHHHH.HTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS-- CS
   HMG_box_2   1 pkkpkaarnAYalfv.qemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkrydrealty 72 
                 pkkp     AY  +v qe ++e +r+G p+    e+++++s+kWk l++ eKek+++      ++y++e ++y
  CCD22277.1 117 PKKPLTVFFAYSAYVrQELRDERQRNGLPPLSSTEITQEISKKWKELNDTEKEKWKQAYTVELEHYQKEKQKY 189
                 57777777799999834556666677******************************99999999999998776 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.2
                 HH CS
   HMG_box_2  61 dk 62 
                 +k
  CCD22277.1 249 KK 250
                 11 PP

>> DUF3086  Protein of unknown function (DUF3086)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.5   1.5e-05     0.054       7      85 ..       8      82 ..       2     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
     DUF3086  7 eleerkqalqieveqLerrkeriekelrtsfaGvsqdlairvqgfkdyLvgslqdLaaaaeqlelvakekavkpePade 85
                +l++ k++l +++ +L++  ++  + +   +    +d   ++ +f   L++slq L++aa+ql+ +++e ++   P+d+
  CCD22277.1  8 KLKSAKDSLVASLFELSKSANQTASSIVDFYNAIGDDEEEKIDAFTT-LTESLQTLTSAANQLHGISSELVN---PMDD 82
                68999****************************************85.9**************988877655...4433 PP

>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.0   1.9e-05     0.069     264     319 ..     131     187 ..     116     198 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
                      -HHHHHHHHHHTTS-TT-TS---HHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHSH CS
  Transketolase_N 264 gedevaalkkklGfdpeksfevpeevydaykekvae.gakaeeeWeekfaaykkkap 319
                        +e++  +++ G+ p +s e+ +e+ +++ke      +k +++++ ++++y+k++ 
       CCD22277.1 131 VRQELRDERQRNGLPPLSSTEITQEISKKWKELNDTeKEKWKQAYTVELEHYQKEKQ 187
                      56799999***********************98875467778888889999988654 PP

>> AP3D1  AP-3 complex subunit delta-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.1      0.33   1.2e+03      73      97 ..     165     189 ..     137     204 .. 0.54
   2 ?    8.6  15.8   0.00057       2.1      33     112 ..     184     261 ..     163     264 .] 0.57

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.33
       AP3D1  73 eesrkakkkakeekkkkkkkkkkkk 97 
                 + +++++k+a + + ++ +k+k+k 
  CCD22277.1 165 DTEKEKWKQAYTVELEHYQKEKQKY 189
                 2333444444444433333333333 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00057
       AP3D1  33 ksassaqnseeveeipvaeldlsvplkvpglkrsdkyleeeesrkakkkakeekkkkkkkkkkkkkkkkkkkkkkeeess 112
                 k+++++ + ++    +v     + p+ +p   + d+y  +  ++ ++k+++ee+ ++  +++kkkkkkkk kkk++++++
  CCD22277.1 184 KEKQKYLEAKKNGTFTVSDGPNNAPVAIPDNLQEDQYPAH--HNLENKRHHEEDGTSTISGEKKKKKKKKDKKKDKSSNT 261
                 333333333444445555555669*************988..44444444445555555555555555544444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2526  (0.140889); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 1964.33
//
Query:       CCD22278.1  [L=369]
Description: hypothetical protein NDAI_0A01200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-53  181.8   3.1    1.9e-53  181.3   3.1    1.2  1  IPK         Inositol polyphosphate kinase
  ------ inclusion threshold ------
      0.026   14.7   0.2      0.048   13.9   0.2    1.3  1  BSMAP       Brain specific membrane anchored protein
      0.073   13.4   0.0       0.14   12.5   0.0    1.4  1  PsbR        Photosystem II 10 kDa polypeptide PsbR
       0.15   12.4   0.3        2.7    8.4   0.0    2.5  2  zf-CCCH_7   Chromatin remodeling factor Mit1 C-terminal Zn fi
       0.28   11.4   3.4       0.56   10.5   2.7    1.9  2  DUF4611     Domain of unknown function (DUF4611)
        0.3   10.7   3.5       0.54    9.8   3.5    1.4  1  GCIP        Grap2 and cyclin-D-interacting
       0.43   10.7   4.2       0.72    9.9   4.2    1.3  1  YL1         YL1 nuclear protein
        1.8    8.2   8.8        3.3    7.4   8.8    1.4  1  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> IPK  Inositol polyphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   3.1   8.4e-57   1.9e-53       1     196 [.     120     358 ..     120     359 .. 0.95

  Alignments for each domain:
  == domain 1  score: 181.3 bits;  conditional E-value: 8.4e-57
                 EEEEE-TTTT-SSEEEEEEEESSSSS-TTSTCHHHHHHHHHHCCSTHHHHSEEEEEEEEEE.............TTTTEEEEEEHHHHCT-SHHHHHHH CS
         IPK   1 ylvLedltagfkkPcvlDvKlGtrtydedaseekrekqqkkskettseslGfrilGmkvyk.............eeedeyltvdkkygrslskeevkea 86 
                 y+vLe+l++gfkkP+vlD+KlG+ +yde+a+ +kr+++  +s++tts++lGfri+Gmk+ +             ++ ++y++ +kk+gr+++++++k+a
  CCD22278.1 120 YIVLENLLHGFKKPNVLDIKLGKILYDENATADKRQRLTMVSNTTTSSTLGFRICGMKIRQnsvtdylsqdhyeNDFNNYVFINKKFGRTRTQKDIKDA 218
                 8**********************************************************55**********99888899******************** PP

                 HHHCCCSSS.SCCHHHHHHHCHHHHHHHHHHHHHCSHSEEESSEEEEEEEETT.............................................. CS
         IPK  87 lkkFlsngk.slrkdakaaskllerLqelkqvlesqeslrfyssSLLfvyegdseaseka..............................eekeaeeee 154
                 +k ++ + + s+++ ++++  +l+rLq ++++l +qe  r++ssSLLf+ye+ds++++                                +++  + ++
  CCD22278.1 219 FKLYFGADTlSKERISSLLTIFLQRLQLFYNTLLNQEI-RMISSSLLFIYETDSDRWDILnnedsmlrdnflqsdddddddddddeyegeDNEVLTAKN 316
                 *****988889999999*********************.**************999988899*************************987666666777 PP

                 ......SSEEEEEE--TTEEE--TSS--HHHHHHHHHHHHHH CS
         IPK 155 eeeskekkvevklIDFAhvvptesggpDegyllGlksLikil 196
                 ++ ++++ +++ lIDFAh+++t+++g+De+++ G++sLi+ +
  CCD22278.1 317 SRLKHSQLSSMSLIDFAHSKFTPGQGYDENVIEGVESLIQKF 358
                 788889999******************************876 PP

>> BSMAP  Brain specific membrane anchored protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   2.1e-05     0.048      71     165 ..     239     327 ..     225     336 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.1e-05
       BSMAP  71 svlelvsslfedivssaqsfisstwtfylqaDdgkvvvfqsepeielflseaedtklgpkdkkakvkkkkeeekeklksskaeeeqpeedflgcl 165
                   l+ ++ ++++++++  ++iss+  f  ++D+ +  ++++e+++      ++d+  +  d++++++ ++   +e l   +a++++ ++++l+ +
  CCD22278.1 239 IFLQRLQLFYNTLLNQEIRMISSSLLFIYETDSDRWDILNNEDSMLRDNFLQSDDDDDDDDDDDEYEGED---NEVL---TAKNSRLKHSQLSSM 327
                 34677899**********************************9765552222333322333333333333...3322...244555555555554 PP

>> PsbR  Photosystem II 10 kDa polypeptide PsbR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.4e-05      0.14      28      89 ..      16      77 ..       2      84 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.4e-05
        PsbR 28 GrkakGkGvyqfvdkyGanvdGyspiytkdewsesGdvyvgGttglliwavllagllagGal 89
                G  +  +G+  f      ++d y  +++  + s++ d+++ G   l  w  ++ g+l  G+ 
  CCD22278.1 16 GTLTDDEGLLVFKPALTQEIDFYKAVHQLSTASNADDSFSNGDVPLYSWMPTFLGVLDEGTT 77
                5556667777788888899**************************************99976 PP

>> zf-CCCH_7  Chromatin remodeling factor Mit1 C-terminal Zn finger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0012       2.7      21      70 ..      87     136 ..      73     144 .. 0.79
   2 ?    1.1   0.1      0.22   4.9e+02      22      64 ..     290     336 ..     272     341 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
                 -----------.B-----S--S-----EESS---HHHHHHHHHTT--SSS- CS
   zf-CCCH_7  21 ekseyvrelek.DdpvfsykviekehrLvansvsklvldnflalysvddsv 70 
                   ++yv e +  D+++  ++v+e  +++ +n+   +vl+n l  ++ ++ +
  CCD22278.1  87 AVPQYVLEDPHmDSTIL-KQVVEDTDKITLNKKKYIVLENLLHGFKKPNVL 136
                 56899877665277777.9***********************999988765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.22
                 ----------B----...-S--S.-----EESS---HHHHHHHHHTT CS
   zf-CCCH_7  22 kseyvrelekDdpvf...sykvi.ekehrLvansvsklvldnflaly 64 
                 +s+   + + Dd  +    ++v+ +k+ rL   ++s + l +f  + 
  CCD22278.1 290 QSDDDDDDDDDDDEYegeDNEVLtAKNSRLKHSQLSSMSLIDFAHSK 336
                 44444555667788877777776367778999999999888887665 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.3   9.6e+03      24      48 ..     165     189 ..     151     198 .. 0.62
   2 ?   10.5   2.7   0.00025      0.56      31      86 ..     259     317 ..     248     322 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.3
     DUF4611  24 eadrlksllsgvaqlreevsellst 48 
                  ++ l   + g++  +++v++ ls+
  CCD22278.1 165 TSSTLGFRICGMKIRQNSVTDYLSQ 189
                 5566666677777667778877765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00025
     DUF4611  31 llsgvaqlreevsellstlveqe..aqddvaaagdeeee.gededdeeeekniknktks 86 
                 + s++  + e  s+  + l +++   +d++ +++d++++ ++d++ e e++++ + ++s
  CCD22278.1 259 ISSSLLFIYETDSDRWDILNNEDsmLRDNFLQSDDDDDDdDDDDEYEGEDNEVLTAKNS 317
                 55555556666666777777777765555555555555514444445566776666655 PP

>> GCIP  Grap2 and cyclin-D-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.5   0.00024      0.54     146     227 ..     287     363 ..     253     367 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00024
                 ...S------------------TTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TT...-HHHHHHHHHHHHHHHH CS
        GCIP 146 deeedededdldddedeergnqdrklseeekevikavlkllkatvallkklsrsiteegkkdskeqvaqldklldlskeise 227
                 +  ++ d+dd+ddd+de +g+ ++ l+++   + +  l+ ++++ + ++k++      g+  +++ ++  ++l++ +k++ e
  CCD22278.1 287 NFLQSDDDDDDDDDDDEYEGEDNEVLTAKNSRLKHSQLSSMSLIDFAHSKFT-----PGQGYDENVIEGVESLIQKFKDLIE 363
                 3445666666777777777778888888888888888888888888888883.....6666667778888888888888776 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.2   0.00032      0.72      13      83 ..     250     318 ..     246     338 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00032
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  13 kLleqeeeedelellFaEeedDeefeseeeeeeeensDsdfdsdeedeesdeeedeeegekelerqerkkr 83 
                 +Ll+qe +     llF  e d + +   ++e+     D  + sd++d++ d+++de ege +    +++ r
  CCD22278.1 250 TLLNQEIRMISSSLLFIYETDSDRWDILNNEDSM-LRDNFLQSDDDDDD-DDDDDEYEGEDNEVLTAKNSR 318
                 5666665555555677767777777777776666.69977777776655.778888888885444444444 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   8.8    0.0015       3.3     112     158 ..     270     321 ..     249     327 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0015
                 ---------------.......-------------------------------- CS
  Cwf_Cwc_15 112 daddedseeeeeeee.......eesdddsdsdsdddddedetaeLlrELekikr 158
                 d+d  d  ++e+  +       +++ddd+d+d+dd+ + ++++ L +   ++k+
  CCD22278.1 270 DSDRWDILNNED--SmlrdnflQSDDDDDDDDDDDEYEGEDNEVLTAKNSRLKH 321
                 444443332222..1234455444444444444444455666667766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2670.27
//
Query:       CCD22279.1  [L=684]
Description: hypothetical protein NDAI_0A01210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-44  152.4   0.0    1.1e-44  152.4   0.0    2.2  2  GTP_EFTU         Elongation factor Tu GTP binding domain
    2.7e-35  121.1   1.1      1e-34  119.2   1.1    2.1  1  GTP_EFTU_D3      Elongation factor Tu C-terminal domain
    1.8e-08   34.6   1.0    1.8e-08   34.6   1.0    2.0  2  GTP_EFTU_D2      Elongation factor Tu domain 2
  ------ inclusion threshold ------
      0.015   15.3   0.1      0.015   15.3   0.1    2.6  2  MMR_HSR1         50S ribosome-binding GTPase
      0.086   13.1   0.1       0.32   11.3   0.1    2.0  1  Peptidase_U32_C  Peptidase family U32 C-terminal domain
       0.83    9.6  42.4        1.2    9.0  42.4    1.2  1  TFIIA            Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8   5.8         6   1.8e+04      42      64 ..     202     234 ..     179     248 .. 0.61
   2 !  152.4   0.0   3.6e-48   1.1e-44       1     188 [.     258     475 ..     258     499 .. 0.90

  Alignments for each domain:
  == domain 1  score: -5.8 bits;  conditional E-value: 6
                 T..........HCHSHHHHHHTSCSSCEEEEEE CS
    GTP_EFTU  42 v..........lDtlkeErergiTiksaaisle 64 
                            +D++ +E+    T ++++++++
  CCD22279.1 202 EelpnvselkiTDKTTTEESTTTTTTTTTTTTD 234
                 022333333448999999888888888887776 PP

  == domain 2  score: 152.4 bits;  conditional E-value: 3.6e-48
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST.............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHH CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv.............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFske 86 
                 k+++ i+++ghvD+GK+T+ ++Lly tg ++k++ ++ e+++             +Dt+keEr+ g Ti++  +++e  t+k++++++D+PGH+ +++e
  CCD22279.1 258 KDHVSIIFMGHVDAGKSTMGGNLLYLTGSVDKRTIEKYEREAkdagrqgwylswvMDTNKEERNDGKTIEVGKAYFE--TEKRRYTILDAPGHKMYVSE 354
                 5799******************************99944222478899*****************************..******************** PP

                 HHHHHHT-SEEEEEEETTTB.......STHHHHHHHHHHHHTTTE.EEEEEESCGST.....HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEE CS
    GTP_EFTU  87 virglrvlDgavlvvdaveG.......vepqteevlrlalkegvp.iivfiNKmDrl.....kaelkeiveevkqklsrkeeklekygekgekevpvvf 172
                 +i g++++D+ +lv++a++G          qt+e++ la+++gv+ +iv iNKmD +     +++++++v+++  ++      l+++g+++e +v  ++
  CCD22279.1 355 MIGGASQADVGILVISARKGeyetgfeKGGQTREHALLAKTQGVNkMIVTINKMDDPtvnwsEERYDQCVKNLT-NF------LKAIGYNKE-DVVYMP 445
                 *************************9999****************************99999999999999999.66......7999***96.****** PP

                 EBTTTTBTHH..............HHHHHH CS
    GTP_EFTU 173 gSalkgegvk..............tlleal 188
                 +S+++g g+k              +lle+l
  CCD22279.1 446 VSGYSGAGLKdrvdpkvcpwytgpSLLEYL 475
                 *******99966666666666666455544 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   1.1   3.5e-38     1e-34       1     111 [.     574     682 ..     574     683 .. 0.99

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 3.5e-38
                  --EEECCEEEEEEESSS..SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEEEEC CS
  GTP_EFTU_D3   1 sikphtkfeAqvyilekerhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFaiRe 98 
                  ++k++tkf Aq++i+e   ++++ agY++v++++ta +++++++Ll+kl+k t+++s+k p f+k+G+++i+ ve++ p+++e++++ypqlGrF++R+
   CCD22279.1 574 PVKNVTKFVAQIAIVEL--KSIMSAGYSCVMHVHTAIEEVTITRLLHKLEKGTNRKSKKPPAFAKKGMKIIALVETEVPVCVETYEDYPQLGRFTLRD 669
                  6899*************..******************************************************************************* PP

                  TTCEEEEEEEEEE CS
  GTP_EFTU_D3  99 ggrTvaaGvvtei 111
                  +g+T+a+G++++i
   CCD22279.1 670 QGTTIAIGKIMKI 682
                  ***********99 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       3.4     1e+04      39      48 ..     229     238 ..     209     262 .. 0.48
   2 !   34.6   1.0     6e-12   1.8e-08       1      74 []     501     569 ..     501     569 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.4
                  EEETEEESEE CS
  GTP_EFTU_D2  39 etfhededea 48 
                   t   d d++
   CCD22279.1 229 TTTTTDADTL 238
                  3333333333 PP

  == domain 2  score: 34.6 bits;  conditional E-value: 6e-12
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETE.EESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhe.dedeavaganaGvivaikgledaiivGdtlt 74 
                  Gtv+ g+++sG +kkG+   +++n     +  ++i+ ++ + e ++d av+g+++ + +++++ ed + +G +lt
   CCD22279.1 501 GTVVEGKIESGHIKKGQSTIMMPN-----KVPVEIQNIYNETEaEVDMAVCGEQVKLRIKGVEEED-VSAGFVLT 569
                  9********************776.....346*********99888889*****************.******96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   2.5         6   1.8e+04      28      28 ..     218     218 ..     185     249 .. 0.59
   2 ?   15.3   0.1   5.1e-06     0.015       2      92 ..     263     378 ..     262     409 .. 0.64

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 6
                 S CS
    MMR_HSR1  28 d 28 
                  
  CCD22279.1 218 T 218
                 1 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 5.1e-06
                 EEEEESTTSSHHHHHHHHH................T...............STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt................g...............ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgka 69 
                 ++++G+  +GKSt+   l+                +               ++ + ++  g+T+++ ++ +++++++++++D pG  +    +  +++ 
  CCD22279.1 263 IIFMGHVDAGKSTMGGNLLyltgsvdkrtiekyerEakdagrqgwylswvmDTNKEERNDGKTIEVGKAYFETEKRRYTILDAPG--H----KMYVSEM 355
                 7899**********999885666666555555554044555555666554446677788899999988888888899********..4....2334444 PP

                 HHHHHCTSEEEEEEETTTTCSHH CS
    MMR_HSR1  70 flaleeadlillvvdaseeklkp 92 
                 +    +ad+ +lv++a++++++ 
  CCD22279.1 356 IGGASQADVGILVISARKGEYET 378
                 4445568*******998554533 PP

>> Peptidase_U32_C  Peptidase family U32 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00011      0.32      33      74 ..     519     561 ..     512     568 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
  Peptidase_U32_C  33 EvltPkgenveftveelydedgeeieva.phpgqkvkik.lp.ve 74 
                       ++ P  ++v+++++++y+e++ e++ a  + + k++ik ++ ++
       CCD22279.1 519 TIMMP--NKVPVEIQNIYNETEAEVDMAvCGEQVKLRIKgVEeED 561
                      58999..5699999**************67778888887233344 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  42.4   0.00041       1.2     124     372 ..       4     259 ..       1     266 [. 0.36

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00041
       TFIIA 124 ppvqipagvtlqtasg..qlykvnv.qasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqqlekqqqq.qqqqqqqqqqqqvqqqq 218
                 p++q   g  +q  ++  q+y++   +++g qq a  +  q  q  qg ++q++ ++ q+   q+q+  +p qq ++q+q  q qq  q  q    +qq
  CCD22279.1   4 PNQQQQQGNAQQGGNNsyQNYQQYYqNPQGNQQTAGYQSYQGYQGYQGYNQQQQYQPQQQ---QQQQGYQPYQQYNPQAQGfQPQQGYQSYQG--YNQQ 97 
                 344444444444433333444444456666666666666666555666666666555443...344445555553333222233332222222..1111 PP

       TFIIA 219 qe......esqqaqqasqe....qvagsqvessqtdgaedaleeespv.legelsaeeeagaqk.eelsreeidrire...........ealkakelek 294
                         +  q  +++++    q +g q++++q  ++         + l+  ++++++ ga +     +++++ + +            + k++  ek
  CCD22279.1  98 GGyqqggyQ--QGGRNNNYksynQNQGYQAYNQQSTNQG--------MsLKDFQQQQQPTGATTsAPKPKKTLKLVSSsgiklanatkkPEPKDTTPEK 186
                 111123221..2222211122222222233333333333........2222222222222222101222222222222233222222221222221111 PP

       TFIIA 295 eskkkkraeessla.......dlseilqlDGagddsdeeeeeeesdedsdsessddedeqveEDplNSd..DDvddeddddlfdtdn 372
                 +++++++ +    +       +l+++  l  ++ +++e e  ++  + ++++++      ++ D l  +  D vd+e ++d+f++ +
  CCD22279.1 187 TTEEQST-T----NttttteeELPNVSELKITDKTTTE-E--STTTTTTTTTTT------TDADTLIKEqeDEVDEEVVQDMFGGKD 259
                 1122211.1....0112222355555555555555555.2..222222222222......455555444469999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1760  (0.098165); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 4549.91
//
Query:       CCD22280.1  [L=445]
Description: hypothetical protein NDAI_0A01220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-11   44.7   0.1    1.2e-11   44.7   0.1    2.3  3  HSP20         Hsp20/alpha crystallin family
    6.5e-06   25.6   0.0    1.3e-05   24.7   0.0    1.5  1  ArsA_HSP20    HSP20-like domain found in ArsA
  ------ inclusion threshold ------
       0.25   11.2  26.5       0.38   10.5  26.5    1.2  1  RR_TM4-6      Ryanodine Receptor TM 4-6
        8.5    3.3  14.4         11    3.0  14.4    1.0  1  GREB1         Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   1.1       2.8   1.2e+04      36      50 ..     127     141 ..     126     148 .. 0.53
   2 ?   -4.6   2.4         4   1.8e+04      44      44 ..     248     248 ..     220     262 .. 0.50
   3 !   44.7   0.1   2.6e-15   1.2e-11       5      99 ..     321     423 ..     317     426 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.8
                 EE--..---TT---- CS
       HSP20  36 geheeeeedekglik 50 
                 g++eeee++++++ +
  CCD22280.1 127 GKEEEEEDQDQDMTA 141
                 777744444444443 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 4
                 - CS
       HSP20  44 d 44 
                  
  CCD22280.1 248 V 248
                 1 PP

  == domain 3  score: 44.7 bits;  conditional E-value: 2.6e-15
                 SEEEEEEEEE-TT--CCCEEEEEETTE..EEEEEE--...---TT.----SS---EEEEEE--ST..TB-TTT-EEEEETTEEEEEEEBSS--....-- CS
       HSP20   5 eeeefevkldvpglkkeelkvkvednr..vlvkgehe.eeeedek.glikerssrkFsrkftLPe..nvdadkvkaslkdGvLtvtvpkkepekk..kk 95 
                  ++++ v l++pg + ++ k++++  +  +lvkg+ e +   dek   i+e +++ F+r+++ P    ++++++ka++++G+L+++vpk    ++    
  CCD22280.1 321 LKDHYVVVLALPGANSKDFKIDYHPSSheLLVKGNVEdKLGIDEKyLKITELKYGAFERTIKFPVlpRIKDEEIKATYNNGLLQIKVPKIVDGSEkpAP 419
                 689********************965555*******95334444415689**************8889*********************8765543344 PP

                 ---- CS
       HSP20  96 erki 99 
                 +++i
  CCD22280.1 420 KKRI 423
                 5555 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.9e-09   1.3e-05       1      62 [.     322     406 ..     322     407 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.9e-09
  ArsA_HSP20   1 ddeyvlkldLPfvdkee..idlsrsgdeLtIkig....................nfrRqitLP..svlarkevtsAkfedgvLeIr 62 
                 +d+yv++l+LP+++ ++  id + s  eL++k +                     f R+i  P   +++++e+ +A++++g L I+
  CCD22280.1 322 KDHYVVVLALPGANSKDfkIDYHPSSHELLVKGNvedklgidekylkitelkygAFERTIKFPvlPRIKDEEI-KATYNNGLLQIK 406
                 69***********999644888889***********************************88844479*****.**********96 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  26.5   8.5e-05      0.38      34     161 ..     126     260 ..     115     288 .. 0.54

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.5e-05
                 ...XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX CS
    RR_TM4-6  34 aageeeeedllsdvfgldlkkeggqykvvakkseagLgDlseteaeespt...........pelkkklaeeeeaeeekeeeeepeaeaeekadaengek 121
                   +eeeeed  +d+ + d++k +++    ++++  g +D  e+ +e++++           p+ +   + +e+ ++e+++e++++++++++++ e++e+
  CCD22280.1 126 EGKEEEEEDQDQDM-TADEEKGNQEPSYYHQNNRRGVTDTREQYPEHPLSqllssllgvppPSNEPDFEPSESDNDEQQHEQQQKQQEQKEQQGEENEQ 223
                 34555666666664.66666666667788999999************9986666666665433333333444444444444444444434444444443 PP

                 XXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXX CS
    RR_TM4-6 122 eekekekeeeekeseeeeeekkkkkkakskkkeeaeaees 161
                 ++++ e   e+ e++++e  ++k++k+ +k+kee+e+ee 
  CCD22280.1 224 AQSDVE---EKVEERTSEVGQPKEEKEVEKEKEEEEEEEE 260
                 333333...2222222333333333333333333333322 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0  14.4    0.0025        11    1092    1249 ..     121     292 ..     110     322 .. 0.42

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.0025
       GREB1 1092 llesdaeklsstdnedeelqedgerpksnssavqstsdsvaadaaeesskts..................pvkvekseskdavesglsskasaksel 1170
                    ++d+ k+ + + +d++++ d+e+ +++ s  ++ + +  +d+ e+  ++                   + + ++s+++++++++++ ++++k+++
  CCD22280.1  121 YDNDDEGKEEEEEDQDQDMTADEEKGNQEPSYYHQNNRRGVTDTREQYPEHPlsqllssllgvpppsnepDFEPSESDNDEQQHEQQQKQQEQKEQQ 217 
                  4444455555555555555555555555544444444444444433332222345556678998866553111222222222222222222222222 PP

       GREB1 1171 seasaaaasaseeakspkasvtseeeeseeskekekeslsketesqlsleaseqkealdakasskssssssssssassP 1249
                   e++++a+s  ee+ ++++s + + +e +e++++++e+ ++e+e    +e++ +ke+ + k + +sss     ++ ++P
  CCD22280.1  218 GEENEQAQSDVEEKVEERTSEVGQPKEEKEVEKEKEEEEEEEEEVPPLKEPTATKESFKPKLKRNSSSF----AHLQAP 292 
                  223333334444443443333333333333333333333333333333333333333333333333333....333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2687  (0.149869); expected 358.6 (0.02)
Passed bias filter:                      923  (0.0514808); expected 358.6 (0.02)
Passed Vit filter:                       317  (0.0176809); expected 17.9 (0.001)
Passed Fwd filter:                        98  (0.005466); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.36u 0.37s 00:00:01.73 Elapsed: 00:00:00.53
# Mc/sec: 2524.15
//
Query:       CCD22281.1  [L=2025]
Description: hypothetical protein NDAI_0A01230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-70  236.1   0.0    8.3e-70  234.2   0.0    2.2  1  Sec7      Sec7 domain
    3.8e-42  143.9   1.1    3.8e-42  143.9   1.1    3.4  3  Sec7_N    Guanine nucleotide exchange factor in Golgi transpo
    8.8e-29   99.2  18.5    2.4e-28   97.8   2.3    6.1  6  DUF1981   Domain of unknown function (DUF1981)
    9.9e-19   67.7   3.6    9.9e-19   67.7   3.6    3.7  3  DCB       Dimerisation and cyclophilin-binding domain of Mon2


Domain annotation for each model (and alignments):
>> Sec7  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.2   0.0   1.8e-73   8.3e-70       1     183 []     823    1006 ..     823    1006 .. 0.98

  Alignments for each domain:
  == domain 1  score: 234.2 bits;  conditional E-value: 1.8e-73
                  HHHHHHHHHHHHHH-HHHHHHHHHHCCCCTSS.HHHHHHHHHHTCCS-HHHHHHHHCSGGHHHHHHHHHHHCTS--TT--HHHHHHHHCCCS-B-SS CS
        Sec7    1 rkklleeaaekFnkkpkkgikyliekglleed.pksiakflketpgldkkklGeylgkekefnkevlkefvdlfdfsglrldeAlRlflssfrlpgE 96  
                  rk++l+ +++ Fn+kpkk+i+ l +kg++++d pk+iak+l +t+gld + +G++lg+ +e n+ v+++fvd +df+gl++++ lR+fl++frlpgE
  CCD22281.1  823 RKTQLSDCIAVFNSKPKKAIPLLLQKGFIKDDsPKEIAKWLLNTDGLDLAVVGDFLGEGDEKNIAVMHAFVDEMDFTGLSIVDGLREFLQEFRLPGE 919 
                  6899*************************6555**************************************************************** PP

                  HHHHHHHHHHHHHHHHHTTCTCG-SHHHHHHHHHHHHHHHHHHC-TTSCCS--HHHHHHCTTTTBTTB---HHHHHHHHHHHHHS-- CS
        Sec7   97 aqkierilekFaekyfeqnpevfenadavfvLaysiimLntdlhnpqvkkkmtledFiknnrgindgkdlpeefLeeiYdsIkeeei 183 
                   qki+r++ kFae+y++qnp +f++ad+++vL+ys+imLntdlh++qvk++mtl+dF++nn+gi++g+dlp++fL  +Y++I+++ei
  CCD22281.1  920 GQKIDRFMLKFAERYVDQNPGMFSKADTAYVLSYSLIMLNTDLHSSQVKNRMTLNDFLENNEGIDNGNDLPRDFLVGLYNEIANNEI 1006
                  *************************************************************************************98 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.55   2.5e+03       4      48 ..     266     311 ..     260     322 .. 0.68
   2 !  143.9   1.1   8.5e-46   3.8e-42       2     158 .]     494     660 ..     493     660 .. 0.94
   3 ?   -1.1   0.1      0.35   1.6e+03      84     122 ..    1608    1646 ..    1583    1679 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.55
      Sec7_N   4 DaflvfrdLcklinsakskpkflslaersktfsLeLl.esvlsnhg 48 
                 D +l+f++L   + +++sk k+ +l+ +sk+fs   l esvl n +
  CCD22281.1 266 DSILIFEALRAACRTKSSKIKIKALDCLSKLFSFRALdESVLINLP 311
                 6677777777777644434554488888888888766466666655 PP

  == domain 2  score: 143.9 bits;  conditional E-value: 8.5e-46
      Sec7_N   2 akDaflvfrdLcklinsaks...k..pkflslaersktfsLeLlesvlsnhgdvfr.........khpellqllkqklcplLlknlsespsfpvfersl 86 
                 +kDaflvfr+++k+++  k+   +  ++  s+a+r k++sL++++s++++h d+f          ++++ll+ ++q lc +L++n+ +sp  pvfe+++
  CCD22281.1 494 IKDAFLVFRTMAKICA--KQleaDldMR--SHAVRAKLLSLHIIYSIIKDHIDLFLspyvyfhgkESSTLLESVRQFLCLSLTRNA-ASPISPVFEITA 587
                 79************66..5445533355..**********************************99********************.************ PP

      Sec7_N  87 rivllLlkkfrseLktEievflsllililles.dsslwqrvlaLeilrrlcsdpqllvelylnYDcdeeaknv 158
                 +i++lL+ ++r+e+ +Ei vfl++++++++e  +s+++q+ ++L i++r+c+dp++l+e+ylnYDc++ ++n+
  CCD22281.1 588 EIMWLLIANLRAEFRREIPVFLTEIYFPITELkTSTSQQKRYFLSIIQRICNDPRTLIEFYLNYDCNPGMPNI 660
                 *****************************88889999*******************************99987 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.35
      Sec7_N   84 rslrivllLlkkfrseLktEievflsllilillesdssl 122 
                   +lr +  L++++ ++L++ +  fl ll+  +++++ ++
  CCD22281.1 1608 QALRNLIALFTHYFESLNRMLDGFLGLLVSCICQENDTI 1646
                  467788889999999999999999999999998886654 PP

>> DUF1981  Domain of unknown function (DUF1981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.24   1.1e+03      27      46 ..     279     298 ..     259     302 .. 0.76
   2 ?   -1.1   0.1      0.39   1.8e+03      40      66 ..    1162    1188 ..    1140    1195 .. 0.76
   3 !    4.4   0.1    0.0076        34      24      69 ..    1300    1345 ..    1283    1364 .. 0.69
   4 !   97.8   2.3   5.3e-32   2.4e-28       1      83 [.    1368    1450 ..    1368    1451 .. 0.98
   5 ?    1.1   0.2     0.083   3.7e+02       5      28 ..    1476    1499 ..    1470    1508 .. 0.71
   6 ?    1.4   0.0     0.066     3e+02      32      64 ..    1653    1685 ..    1640    1695 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.24
     DUF1981  27 nnssaeirelvlecveqliq 46 
                 +++s++i+ + l+c+++l +
  CCD22281.1 279 RTKSSKIKIKALDCLSKLFS 298
                 46778888888888888766 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.39
     DUF1981   40 cveqliqsraeniksGWktifgvltaa 66  
                  ++ ++  s+++ +k  W+ ++ v+++ 
  CCD22281.1 1162 ILLEVSLSEGNYLKESWTDVLFVVSQL 1188
                  45667788999*******999998875 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0076
     DUF1981   24 imsnnssaeirelvlecveqliqsraeniksGWktifgvltaaake 69  
                  i s+++ ++ r + l+ +  ++  +++ ik  W++i+++++ a ++
  CCD22281.1 1300 IESSQNASTPRMFSLQKMVDVCYYNMDRIKLEWTPIWTIMGNAFNK 1345
                  335566666888888888899999999***********99877643 PP

  == domain 4  score: 97.8 bits;  conditional E-value: 5.3e-32
     DUF1981    1 kflekeelsnfkfQkefLkPFeeimsnnssaeirelvlecveqliqsraeniksGWktifgvltaaakeeneslvrlafqilk 83  
                  +fl++eel+ f+fQ++fLkPFe++++n++++e++e+++ec +++i +++e+iksGWkti++ l+++a++++es+v+++ ++++
  CCD22281.1 1368 RFLDIEELTGFEFQHDFLKPFEYTVQNTTNVEVQEMIIECYRNFILTKSEKIKSGWKTILESLQFTAQSKSESIVKKTQELIS 1450
                  69***************************************************************************999875 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.083
     DUF1981    5 keelsnfkfQkefLkPFeeimsnn 28  
                  ke  +n kfQk  L+ +e + + +
  CCD22281.1 1476 KEITKNKKFQKLALHALESLKKMT 1499
                  567778888888888887765444 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.066
     DUF1981   32 eirelvlecveqliqsraeniksGWktifgvlt 64  
                   +++l+l+ v+++ + + e+i   +k +f++ t
  CCD22281.1 1653 CLQQLILQNVTKFNEEHWEHIGDVFKRLFELTT 1685
                  467788888888888888888877777777665 PP

>> DCB  Dimerisation and cyclophilin-binding domain of Mon2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   3.6   2.2e-22   9.9e-19       3     174 ..     216     421 ..     214     424 .. 0.85
   2 ?    0.5   0.1     0.091   4.1e+02      57     120 ..    1381    1443 ..    1358    1458 .. 0.75
   3 ?   -0.6   0.0       0.2   8.8e+02      50     108 ..    1621    1684 ..    1601    1689 .. 0.59

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 2.2e-22
         DCB   3 askllealqsdlkalsse.skrkhskvkeasekgilkLktikssseeeeqslaeaseeilkPlllacetknpkivqiaLgslqrLisheviseea.... 96 
                 a++ ++ +++ l+a+ +e s +k+++ ++  e+ i +L + ++++  e qs+ +    i++ l  ac tk+ ki   aL++l +L s ++++e+     
  CCD22281.1 216 AKSTIALVKTTLEAIMKEkSMKKYPNAQKIIERTIARLDEEAAQT--ELQSIDSI--LIFEALRAACRTKSSKIKIKALDCLSKLFSFRALDESVlinl 310
                 6788899999**766554399*****************9988888..55666555..789********************************7777777 PP

         DCB  97 ..........................iskiietlwkllel.gve..ielkvLqtllllv...ttssvvhgdtlakalvlCfrL.hfskdnvvqntAaAt 162
                                           i+  i+t+ +++e  g++  +el+++++l + +    + s  hg +l+ka+++ ++   fs ++ +q +A+At
  CCD22281.1 311 pdslasdvqtqddanngitpppkqklIEAAIDTIAECFEGeGTNekVELQIIRSLSSCIlaeDSTSLCHGVSLLKAIRTIYNAfVFSLNPSNQGIAQAT 409
                 77777777888888888888888888************98533369******9998766222344599*************965999999********* PP

         DCB 163 lrQlvsvvFeRv 174
                 l+Q++s vF+R+
  CCD22281.1 410 LTQVISYVFDRI 421
                 ***********8 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.091
         DCB   57 seeilkPlllac.etknpkivqiaLgslqrLishevis.eeaiskiietlwkllelgveielkvLq 120 
                   +++lkP+     +t n+ + ++ +++ +++i ++  + ++  ++i+e+l+  +++++e    +++
  CCD22281.1 1381 QHDFLKPFEYTVqNTTNVEVQEMIIECYRNFILTKSEKiKSGWKTILESLQFTAQSKSE---SIVK 1443
                  58899999988757999999999999999999888776355688899999888888888...4444 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.2
         DCB   50 eqslaeaseeilkPlllacetknpkivqiaLgslqrLishevis..eea...iskiietlwkll 108 
                   +sl +  + +l  l+      n  i  i  ++lq+Li ++v +  ee+   i ++ + l++l+
  CCD22281.1 1621 FESLNRMLDGFLGLLVSCICQENDTIARIGRSCLQQLILQNVTKfnEEHwehIGDVFKRLFELT 1684
                  55666664445544444445667788899999******99998754444333444555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2025 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1432  (0.0798706); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.15u 0.31s 00:00:01.46 Elapsed: 00:00:00.48
# Mc/sec: 12762.98
//
Query:       CCD22282.1  [L=682]
Description: hypothetical protein NDAI_0A01240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-85  285.5   0.0    6.8e-85  285.2   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    3.1e-22   79.3   0.3    7.4e-22   78.1   0.3    1.7  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
    9.3e-20   70.3   0.5    2.3e-19   69.1   0.5    1.7  1  ACAS_N         Acetyl-coenzyme A synthetase N-terminus


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.2   0.0   1.1e-88   6.8e-85       3     422 ..      99     538 ..      97     539 .. 0.87

  Alignments for each domain:
  == domain 1  score: 285.2 bits;  conditional E-value: 1.1e-88
                  HHHHHSTTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTES CS
  AMP-binding   3 eqaaktpdkvalvd....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseak 96 
                  ++a   p+k+a+++    ++e++t+T++el ++v+++A +L+s Gvkkgd+V+++lp+ pe +va+la++++Ga+++++ ++++a  l+  + d+++k
   CCD22282.1  99 RHAFVDPNKPAIIYeaddENENRTITFGELLRQVSQVAGVLKSWGVKKGDTVGVYLPMIPEAIVAMLAVARLGAIHSVIFAGFSAGSLKDRIVDAGCK 196
                  677788************999***************************************************************************** PP

                  EEE......E...TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.........-TSCCCS-BTTSEEEEEEE--SSSS-EE CS
  AMP-binding  97 vli......a...tvdselleklleaaakleavklvivldadellkeeelkeeeeseekae.........kpeeeeelkpddlayiiYTSGTTGkPKG 176
                  v+i      +   tv+++  + ++e    +++v++++v ++ +++  ++  +++    +++            ++++++++d+++++YTSG+TG+PKG
   CCD22282.1 197 VVItcdegkRggkTVHTK--KIVDEGLNGVDSVSHILVFQRTGSEGISMKAGRD---FWWHqeiekqrryL--PAVPCNAEDPLFLLYTSGSTGTPKG 287
                  ***999887255343333..4456666677888999988887766554444444...33312345667433..5668********************* PP

                  EEEEH.HHHHHHHHHHHHHHC.SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCC CS
  AMP-binding 177 Vmlsh.rnlvanvaslkletr.fklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvleallesg 271
                  V++++ ++l+ ++ +   + + f+++++dv+++  ++ +i+g++++l+++l+ G + ++++ ++a +d ++ ++ ie++++t+++++P++l+ + + g
   CCD22282.1 288 VVHTTgGYLLGAALTT--R-YvFDIHPEDVLFTAGDVGWITGHTYALYGPLVLGTATIIFESTPAyPDYGRYWRIIERHRATHFYVAPTALRLIKRVG 382
                  *****55555555553..3.459999***************************************88888999*********************8866 PP

                  CHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC...EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE.TTSEE CS
  AMP-binding 272 alkaakkakdlsslrlvllggeplspellrffralfge...evlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvp.dgeeG 365
                  + +   +++d sslr++ ++gep+sp+l++++++++g+    v ++ ++TE + +++ +      +k+gs+  p+ g+e+ i+D+ tg +++ +++eG
   CCD22282.1 383 EAE--IAKYDTSSLRVLGSVGEPISPDLWEWYHEKVGNkdcVVCDTMWQTESGSHLIAPLAGAVPTKPGSATVPFFGIEACIIDPVTGVELEgNDVEG 478
                  666..456699****************************999**************864444555789***********************857777* PP

                  EEEEEET..TS-SEBTT-HHHHHHHEEET.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 366 ellvrgp..gvmkgYlkkpeataeafdse.grwlrTGDlgrldedGyleivgRkkdlikl 422
                   l v+    ++++  +++++    ++ ++ ++++ TGD + +d+dGy++i gR +d++++
   CCD22282.1 479 VLAVKNTwpSMARSIWNNHSHYINTYLKPyPGYYFTGDGAGRDHDGYYWIRGRVDDVVNV 538
                  *****87558***************9976778**************************98 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.3   1.2e-25   7.4e-22       1      76 []     547     637 ..     547     637 .. 0.88

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 1.2e-25
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE--.....----............HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkd.....gsea............leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E+ lv+ + V+eaaVvG+ de++G+a+vafV lk+     +  a            l++eL+ +vr+e+gp+a+pk++v++ +lpktrsGK
     CCD22282.1 547 EIEASLVNNEHVSEAAVVGIADELTGQAVVAFVSLKKsfvqeN--AeegdfehatpteLRRELILQVRTEIGPFAAPKNIVLIRDLPKTRSGK 637
                    8**********************************97444431..1345566677788**********************************9 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.5   3.8e-23   2.3e-19       1      55 []      40      96 ..      40      96 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 3.8e-23
                HHHHHHHHHH-HHHHHHHHHCC.S--SB--S-SECSTTTC.T-EESTT-EE-HHHHH CS
      ACAS_N  1 ykelykeSiedpeaFWaeqake.ldWekpfdkvldgskgp.fikWFeGGklNicyNc 55
                y++ly++Si+dpe+F++e a+e l W+kpf+kv +gs +  +++WF +G+lN++yNc
  CCD22282.1 40 YRQLYDQSINDPEKFFGEKANEfLAWDKPFTKVKSGSLEHgDAAWFLNGELNASYNC 96
                99***********************************7777**************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4950.85
//
Query:       CCD22283.1  [L=447]
Description: hypothetical protein NDAI_0A01250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-62  209.1   5.3    4.6e-62  208.5   5.3    1.3  1  TIP41     TIP41-like family


Domain annotation for each model (and alignments):
>> TIP41  TIP41-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.5   5.3   2.6e-66   4.6e-62       1     171 [.     224     403 ..     224     404 .. 0.92

  Alignments for each domain:
  == domain 1  score: 208.5 bits;  conditional E-value: 2.6e-66
       TIP41   1 mvFgnnlleleheksgvklefnaldaLkavkkeeee....kvayakewkksrkkkkevvkpyDwtytteYkGtl........eeklkveeteeeiplek 87 
                 m+Fgnn+++le+ k++++l+fnald+Lk+v++++e     kv+y+++w ++ +++  ++k++Dwty+t+YkGt+        ++kl++ +++ ++p++k
  CCD22283.1 224 MIFGNNFIKLENLKHNWSLSFNALDSLKMVNTNTEIkdiiKVSYSDKWVDHVNRN--SMKNFDWTYSTKYKGTEifngenleKKKLQL-DNDVQLPMDK 319
                 9******************************9976689************99655..78***************88887753333333.44459***** PP

       TIP41  88 LkrkdpilfydevvLyedeLadnGisllsvkvrvmpeclllLlRfflRvDnvlvrvrdtrvyvefeseevlrevkekeakyeev 171
                 L+r d+ilf+d+++L+edeLadnGis+l+vk+rvm+e+ll+L+RfflRvDnv++r+++trvyvef+++ ++re+ke +++y+++
  CCD22283.1 320 LSRLDKILFFDDMILFEDELADNGISVLNVKIRVMEERLLILSRFFLRVDNVICRIYETRVYVEFNDNLIIREFKEFQDDYKNI 403
                 *********************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1613  (0.089966); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3201.00
//
Query:       CCD22284.1  [L=167]
Description: hypothetical protein NDAI_0A01260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-06   27.5   0.2    1.1e-05   25.8   0.1    2.0  2  Evr1_Alr  Erv1 / Alr family
  ------ inclusion threshold ------
       0.33   11.5   0.1       0.33   11.5   0.1    1.9  2  DUF3899   Domain of unknown function (DUF3899)
       0.58   10.8   6.3        2.2    9.0   2.2    2.8  3  RRP14     60S ribosome biogenesis protein Rrp14


Domain annotation for each model (and alignments):
>> Evr1_Alr  Erv1 / Alr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   1.9e-09   1.1e-05      13      89 ..       4      85 ..       1     101 [. 0.70
   2 ?   -0.6   0.0      0.32   1.9e+03      59      73 ..     100     114 ..      88     147 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.9e-09
                CSHSS..HHHHHHH-CHHHHHHHHHHHSSCHHHHHHHHHHHH..........HCH.CCCGSSHHHHHHHHHHHHHHHHHHTT...T- CS
    Evr1_Alr 13 evpekpteeqqkelavlkaflkliakfypCeeCaehfekvla..........enppekevesrdelvlWlweaHNeVnkrlakeefd 89
                ++pekp++++++ +    +++kl+++fyp ++ +e  e+             +++p   v+sr  l+lW +++HN +n+r+  ++ +
  CCD22284.1  4 KFPEKPSRKESNGM---VSYIKLFEEFYPYRYNEEREEE-EDgyeyffdemlDMYP-PCVSSRLCLSLWGCQIHNLINERIYYKNNN 85
                68899999889889...99***********987776666.2212233322223332.469*********************844322 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.32
                 CCCGSSHHHHHHHHH CS
    Evr1_Alr  59 ekevesrdelvlWlw 73 
                 +k+ ++r+++v++ +
  CCD22284.1 100 KKKNTNRKKFVKYNC 114
                 344455555555554 PP

>> DUF3899  Domain of unknown function (DUF3899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2         1     6e+03      41      50 ..      32      42 ..      18      50 .. 0.55
   2 ?   11.5   0.1   5.5e-05      0.33      43      68 ..      78     109 ..      57     118 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1
     DUF3899 41 lkk.skkddsy 50
                 ++ ++++++ 
  CCD22284.1 32 YNEeREEEEDG 42
                22234444444 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 5.5e-05
     DUF3899  43 k.....skkddsyyeykekkkes.skkstrpl 68 
                 +     ++++d+++e++e+kk++ +++  +++
  CCD22284.1  78 RiyyknNNRHDDDEEEEEEKKGKkKNTNRKKF 109
                 23335688888888888887776533333333 PP

>> RRP14  60S ribosome biogenesis protein Rrp14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.033     2e+02       7      18 ..      45      56 ..      41      58 .. 0.86
   2 ?    9.0   2.2   0.00036       2.2      14      43 ..      73     103 ..      69     112 .. 0.62
   3 ?   -2.0   0.1      0.93   5.6e+03      29      38 ..     140     149 ..     133     165 .. 0.51

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.033
       RRP14  7 kfFdsLlslIPa 18
                 fFd++l++ P+
  CCD22284.1 45 YFFDEMLDMYPP 56
                59*******987 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00036
       RRP14  14 slIPakfYlpkdee.eednskklkkqkkkka 43 
                 +lI +++Y++++++ + d++++  k+ kkk 
  CCD22284.1  73 NLINERIYYKNNNRhDDDEEEEEEKKGKKKN 103
                 6899999**9998877777663333333322 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.93
       RRP14  29 ednskklkkq 38 
                 ed ++++ ++
  CCD22284.1 140 EDDEQQYYDN 149
                 3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1980  (0.110436); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1229.34
//
Query:       CCD22285.1  [L=82]
Description: hypothetical protein NDAI_0A01270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 651.37
//
Query:       CCD22286.1  [L=501]
Description: hypothetical protein NDAI_0A01280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-59  201.3  13.9    2.3e-59  201.3  13.9    1.8  2  V-ATPase_H_N  V-ATPase subunit H
    7.8e-42  142.1   0.3    7.8e-42  142.1   0.3    3.4  4  V-ATPase_H_C  V-ATPase subunit H
  ------ inclusion threshold ------
       0.11   12.8   9.7        0.2   11.9   1.0    2.8  2  TMF_TATA_bd   TATA element modulatory factor 1 TATA binding


Domain annotation for each model (and alignments):
>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.3  13.9   3.8e-63   2.3e-59       2     315 .]      19     368 ..      18     368 .. 0.90
   2 ?   -0.8   0.1      0.13   7.5e+02     187     212 ..     414     444 ..     405     497 .. 0.52

  Alignments for each domain:
  == domain 1  score: 201.3 bits;  conditional E-value: 3.8e-63
  V-ATPase_H_N   2 vlqelankirarkipWegyvrsqliseedlkliksldkakkeqraklldedgpqyvklll..........nLlsklskedtlqyiLvlidDllsedk 88 
                   +++e+++ ir+r++ W+++ r++ is++d  ++k+l+k+ ++++    +e+g++ ++ll           ++l++ ++ +  +   +li++lls+d+
    CCD22286.1  19 HFNEIRKAIRSRSVGWDALIRAEIISQTDGVTAKRLEKVLVKHE--KPEESGTDNESLLKiddevllsllRILKTSDSMESQKATQNLIAELLSSDE 113
                   89*************************************99997..44555555555554555555533355555577778899************* PP

  V-ATPase_H_N  89 srvelflslakkeeqdpwkpflk.llnrqddfivllalrllakllvqgkkksnklv.esaL..nrllqlLssqlssstnevieiavrllqellrtke 181
                   +   +++ ++++ eq  ++ +++  + r d+++vl+++++l++ll+q k ++nk    +++  +++++lL++ ++ +t+   ++++rl+qel+  k+
    CCD22286.1 114 YSDVTVRFFQENPEQ--VQELFDvSMVRGDSQTVLISAFNLVSLLIQDKLNENKEMvIQIFenENFIKLLQNYEKTDTC---YVCIRLIQELMTIKS 205
                   ********9999888..888888577777***********************994445555989999*****9999999...*************** PP

  V-ATPase_H_N 182 yRelfve..adgvstlisilr.........................stvanstrvgiQlqYqvllclWlLsFekkiaeelvkkk.elipllvdilrd 250
                   y++++++  a++v+tl+ i++                          + +ns+++giQ+qY++ll++Wl++F+ + a+e+ +k+ e + +l+++++ 
    CCD22286.1 206 YKKIVWDneAKIVPTLFIIIKrainettssssstsssngggrmfvpTINNNSNNLGIQIQYYSLLLIWLMTFNSNWAREFINKYlEDFLKLLKLIKV 302
                   *******999**********9************************999999********************************************** PP

  V-ATPase_H_N 251 svKEKvtRvilatlrNllekaeksskelaa.vmvqvkllkllenLeerkfsDeditedleyLkeeL 315
                   ++KEK+ R++++++++++++ +k +k++++ ++++++ +++l++L+erk+sDe++++d+ +Lke L
    CCD22286.1 303 TIKEKISRLSISIILQCCSNRVKGNKQIIKdLILLGDGIPTLQSLSERKYSDEELRNDIIELKEIL 368
                   ***********************99777661567899**************************987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.13
  V-ATPase_H_N 187 ve..adgvstlisilr...stvanstrvgiQ 212
                   ++  ++++++li+i +   st++++t++ +Q
    CCD22286.1 414 WKifKKLINLLIDIEKsgsSTTTSQTKLILQ 444
                   4444444444444332222222222222222 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.53   3.2e+03      36      59 ..      74      97 ..      46     114 .. 0.58
   2 ?    3.4   0.8     0.013        77      34     114 ..     119     202 ..     110     206 .. 0.70
   3 ?   -2.0   0.2      0.61   3.6e+03      33      64 ..     282     317 ..     275     335 .. 0.49
   4 !  142.1   0.3   1.3e-45   7.8e-42       1     117 []     374     500 ..     374     500 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.53
  V-ATPase_H_C 36 leeknfkllkkLiklleeskdktv 59
                  l + + ++l +L+++l++s++ ++
    CCD22286.1 74 LLKIDDEVLLSLLRILKTSDSMES 97
                  444445666667777754444333 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.013
  V-ATPase_H_C  34 ekleeknfkllkkLiklleeskdktvlavalnDigelvkl..lpegkkvl.eklkaKekimellehedeevkyeALkavqkllv 114
                    ++ ++n + +++L+++     d++++ + ++++ +l+ +  l+e k+++ + +++ + i  l + e ++  y  ++ +q+l++
    CCD22286.1 119 VRFFQENPEQVQELFDVSMVRGDSQTVLISAFNLVSLLIQdkLNENKEMViQIFENENFIKLLQNYEKTDTCYVCIRLIQELMT 202
                   567778899999**9999888899999999999888764422445555551555555555555555678888888888888875 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.61
  V-ATPase_H_C  33 aekleeknfkllkkLikll....eeskdktvlaval 64 
                   a+++ +k  + + kL+kl+    +e+ ++ +++++l
    CCD22286.1 282 AREFINKYLEDFLKLLKLIkvtiKEKISRLSISIIL 317
                   455555555555555555522223333344444444 PP

  == domain 4  score: 142.1 bits;  conditional E-value: 1.3e-45
  V-ATPase_H_C   1 kltsfdeYlaElesgkLewspvHksekFWkenaekleeknfkllkkLikll..........eeskdktvlavalnDigelvkllpegkkvleklkaK 87 
                   +ltsfdeY+aEl+s+ L+wsp+H ++ FW++n+++++e+n+k++kkLi+ll          ++s++k +l+valnDi+++++llpe+ +vl++l++K
    CCD22286.1 374 ELTSFDEYIAELDSKLLCWSPPHIDNGFWSDNINEFKENNWKIFKKLINLLidieksgsstTTSQTKLILQVALNDITHVIELLPESVNVLSELGGK 470
                   58*****************************************************99998766777899**************************** PP

  V-ATPase_H_C  88 ekimellehedeevkyeALkavqkllvqnw 117
                    +imell+h+d++vkyeALka+q+++++++
    CCD22286.1 471 VVIMELLNHSDSRVKYEALKATQAMIGYKF 500
                   **************************9987 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   2.2    0.0074        44      34      97 ..      70     132 ..      52     137 .. 0.87
   2 ?   11.9   1.0   3.3e-05       0.2      83     110 ..     343     370 ..     341     375 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0074
  TMF_TATA_bd  34 elerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksEeveEL 97 
                  ++e+l +  de+   +++++k++++++++k   ++l +el + +e  + +   ++e  E+v+EL
   CCD22286.1  70 DNESLLKIDDEVLLSLLRILKTSDSMESQK-ATQNLIAELLSSDEYSDVTVRFFQENPEQVQEL 132
                  677888888999999999999999887765.5799999*************************9 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.3e-05
  TMF_TATA_bd  83 lLellGeksEeveELraDvaDlKemyke 110
                  +L+ l e++   eELr+D+ +lKe++++
   CCD22286.1 343 TLQSLSERKYSDEELRNDIIELKEILED 370
                  79999*******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1203  (0.067098); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3829.26
//
Query:       CCD22287.1  [L=371]
Description: hypothetical protein NDAI_0A01290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-21   75.6   0.0    3.1e-16   59.3   0.0    2.1  2  Gln-synt_C  Glutamine synthetase, catalytic domain
    1.1e-13   50.7   0.0    1.9e-13   50.0   0.0    1.4  1  Gln-synt_N  Glutamine synthetase, beta-Grasp domain


Domain annotation for each model (and alignments):
>> Gln-synt_C  Glutamine synthetase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   3.4e-20   3.1e-16      18     157 ..     123     257 ..     110     283 .. 0.82
   2 !   14.3   0.0   1.6e-06     0.015     205     266 ..     293     358 ..     290     369 .. 0.75

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 3.4e-20
                 TTCEEEEEEEEEEEEESEECCCESSEEEEEEE.TB...B.TSS-TTBHCCCC.CTCCHHHHHHHHHHHTT--EECCEEECCCTEEEEEE--EECHHHHH CS
  Gln-synt_C  18 eGltvvvgpElEFflfdkeedkeasksllevdseekgrpaekggyfsvapvd.eaedlrreivealealgieveashhEvatgQvEinlkfadalkaaD 115
                 ++ ++ +g E E+ lfd  +d      ++ + +  ++ + +   y+ v + +  a+d+++  ++a+  +gie+  + +Ev ++Q E ++ + + +++ D
  CCD22287.1 123 KDEEIWFGLEQEYTLFDMYDD------VYGWPK-GGYPAPQGPYYCGVGAGKvYARDVIEAHYRACLYAGIELSGINAEVMPSQWEFQVGPCTGIEMGD 214
                 45578899*********8777......344433.3444444555556655443789******************************************* PP

                 HHHHHHHHHHHHHHHTT-EEE-SSSSSTTS.---BEEEEEEEE CS
  Gln-synt_C 116 nvvtfKrvvkevArkhgltatFmpKplegd.nGsgmHvhlSlw 157
                 ++ + ++  + vA++ g++++F+pKpl+gd nG g+H+++S  
  CCD22287.1 215 QLWMARYFLHRVAEEFGVKISFHPKPLKGDwNGAGCHTNVSTK 257
                 ***************************98669*********76 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.6e-06
                 HCSSSTTSSSBEEE..ESS-TTCSEEEE-..TSGGCSTEEEECEBTTS-HHHHHHHHHHHHHHHHH CS
  Gln-synt_C 205 RlvpgyeaPvalaw..garNRsallRipa..skekakrvElRlpdasaNPYLalAallaAgldGie 266
                 Rl   +e + ++ +  g  NR a++Rip   +ke    +E R p ++  PYL++ ++       ie
  CCD22287.1 293 RLTGRHETASMTNFssGVANRGASIRIPRsvAKEGYGYFEDRRPASNIDPYLVTGIMCETVCGAIE 358
                 6666666555555411689**********777778889**************99887766554454 PP

>> Gln-synt_N  Glutamine synthetase, beta-Grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0   2.1e-17   1.9e-13       4      82 ..      26     101 ..      23     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 2.1e-17
                 EEEEEEE-SSS-EEEE.EEEHHHHHHHTTTT-E.EEETTSSTTT------EEEEEEEGGGEEE-SS-SS-.EEEEEEEEE- CS
  Gln-synt_N   4 fvdlqFtDikgklkhv.tipadelsedaleegv.sFDGSsiegfaeieeSDmlLkPdlstavidPfreekktarvicdvyd 82 
                 ++++ ++D++g+l++  ++ ++++  ++ + +  +FDGSs+ ++a++++SD++LkP+   +++dPfr+   +++v++ +y+
  CCD22287.1  26 IAEYVWIDGTGHLRSKgRSLKKKI-TSVEQLPEwNFDGSST-NQAPGNDSDIYLKPV--AYYPDPFRRGD-NIVVLAACYN 101
                 679********9985514445777.888888889*******.***************..********999.9*****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2762.95
//
Query:       CCD22288.1  [L=565]
Description: hypothetical protein NDAI_0A01300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-54  184.2   0.2    4.8e-53  180.2   0.2    2.1  1  Actin     Actin


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   0.2   2.7e-57   4.8e-53       4     398 ..      10     533 ..       7     540 .. 0.83

  Alignments for each domain:
  == domain 1  score: 180.2 bits;  conditional E-value: 2.7e-57
       Actin   4 vsavVlDnGssttraGyagedaPkavipslvgkprgrkvea.....klyvgdealtkrpelevrspv.edGvvedwdaveelwehvlkeelkvdpeehp 96 
                  + +V+  G++tt aG+   d P++vips +   ++++++       l +++ +l++ + +ev   + ++G+  +w+a e+ w++ + + l+  pee+p
  CCD22288.1  10 KKCIVIQQGTNTTIAGFNNSDLPQCVIPSTYIYDKQEDKMIfglydMLDIAT-SLEDADRYEVFTILdKNGIPYNWEALEQQWNYLFNDVLRCSPEEYP 107
                 678****************************999999766577654444443.4668999****99999****************************** PP

       Actin  97 llltepplnpp...kqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssknv 192
                 l++t p+++ +   +  ek   +vfE fk+p + +  ++     + gks+glv+D+G+s   v+p++dG v+k+a+ +s+ gG +L+ q+ e+l++k +
  CCD22288.1 108 LVITIPSMKKEidgEVLEKYFSLVFERFKFPVFQIILEPLAITLSLGKSSGLVIDMGSSGCRVTPIIDGTVIKNAVLSSKYGGAFLDYQIIETLQKK-L 205
                 ********997222556899****************************************************************************6.8 PP

       Actin 193 evtprylikkkkvveaessae....keelekltesyktleeeevleeiKesvcevsedpegdeekss................................ 255
                 +   ++++k     ++++  +    + +l+k t+    l+ ++ ++e+K ++++v ++p +d ek++                                
  CCD22288.1 206 DEEATAVVKGSADDDNNNV-NigtsQIDLRKNTSIEAWLQSNTWIKEFKSTMLQVTDKPLQDVEKHHkeqtemyirqheeiqrynstvkdssnanaiea 303
                 8878888877666544443.3476444455555555556777889***************955555522344455555555555555555566666666 PP

       Actin 256 .................sspeksYeLPDg...........seiklge.eRfkvpEiLFdpsligsesaleee........................... 298
                                                         ++i l++ e +k++E LF+p+l+ ++  le+                            
  CCD22288.1 304 aaaanktaiesiynnnpL----------NqkknylikpshKTISLEArECYKLAEYLFQPNLASETFPLEDGlggiigksikkaaatvssigttvsttd 392
                 666666666666665542..........0444444444437888865378***********99999887777*************************** PP

       Actin 299 ...................................kskllgiselivaainacd.vdlrpeLlanivvtGGnsllpglteRlekelaqlaskgvkvkii 361
                                                    +  +++ s+ +  +ina++  ++ ++Ll n+++tG++sll+g+++R+ kel+    +++k++  
  CCD22288.1 393 tmggkghnmgpslvslhknnnttgkkdsnngrvsaSFITQSTSSSLASTINALKpEQVYAKLLTNVIITGSSSLLEGMEQRILKELSI-RFPQYKLTTF 490
                 ********************************98756678888899999999973679*****************************9.77889****9 PP

       Actin 362 apee..erkysaWiGGSiLAslgtfq.qlwvskqEYe...EqG 398
                 a+++  +rk+ +W+G   +++l++ +   w sk+EYe   E+G
  CCD22288.1 491 ANQNimDRKFQSWLGTVTMSNLPSWElGKWYSKEEYEielEKG 533
                 99999******************999789*******9555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1241  (0.0692175); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 4310.55
//
Query:       CCD22289.1  [L=614]
Description: hypothetical protein NDAI_0A01310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-35  123.3   0.0    1.2e-34  120.0   0.0    2.0  1  tRNA-synt_His    Histidyl-tRNA synthetase
    1.3e-12   47.7   0.0    2.8e-12   46.6   0.0    1.6  1  HGTP_anticodon   Anticodon binding domain
     0.0013   18.3   0.7     0.0044   16.6   0.0    2.0  2  HGTP_anticodon2  Anticodon binding domain of tRNAs
  ------ inclusion threshold ------
       0.11   12.0   0.0       0.21   11.0   0.0    1.4  1  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   0.0   2.8e-38   1.2e-34       2     310 .]     128     475 ..     127     475 .. 0.83

  Alignments for each domain:
  == domain 1  score: 120.0 bits;  conditional E-value: 2.8e-38
                    ---EETCHHHHHHHHHHHHHHHHHHTT-EEEE--SEEEHHHHCTTSTCCHHHS-EEE-TTSSEEEE-SSSHHHHHHHHHHHHHTSS-EEEEEEEEE CS
  tRNA-synt_His   2 lrdllpeeaekieelrrrlldlfeswGYelVspPllEyldslltgagedldqtfklvDqsgrllglRaDiTpqvaRiaahrlnrerplRlcYaGsv 97 
                    ++d   +++  +e++ ++l++lf+++G   + +P++E  + l  + ged++ ++ l Dq g+l +lR D+T+  aR++a + n +++ R++ a +v
     CCD22289.1 128 TKDWSDSDMVIREAIFTTLSSLFKRHGGVTIDTPVFELREILAGKYGEDSKLIYNLEDQGGELTSLRYDLTVPFARFVAMN-NIQNIKRFHIA-KV 221
                    5677777788899*****************************************************************986.79999999866.56 PP

                    E.ESS-SS.TT--CCEEEEEEEEESS-.SHHHHHHHHHHHHHHHHHHCTSSSEEEEEEETCHHHHHHHHTT--HHHHHHHHHHHHCT-HHHH.... CS
  tRNA-synt_His  98 l.rtrpdg.lgrsreplQvGaEliGae.gleadlEvlslllealeaaagvkelrldlghvglvralleaaglsesleeallaalarkdlael.... 186
                    + r +p+   gr re++Q+   + G+   +  d E+ls+++e l  a+g+++++++l+h ++++ +++ +g+++++ +++ + +++ d +      
     CCD22289.1 222 YrRDQPAMtKGRMREFYQCDFDIAGTYeHMIPDSEILSIVVEGLT-ALGINDFKIKLNHRKILDGIFQICGVKDEDVRRISSSVDKLDKTPWevvk 316
                    615555554579*************9846777************6.**********************************9999998876541122 PP

                    HHHHHCCTTHHHCCHCC....HCCHCCCHHHHCH...CCHCTHHHHHHHHHHHHHHHHHHHHHHHH-TTEEE-TT--TTTTT--SEEEEEEE.... CS
  tRNA-synt_His 187 kelaaeaglkealrellkal.elygdaevleeal...ealaaapalqaaldeleelaallealakpevrvtlDlaelrgyeYytGlvFaaya.... 274
                    ke+++e+g +e++++ +  + +l+g+ +++   l   e++ ++p +++ lde++ l++  ++++  +  +++Dl++ rg++YytGl+++a++    
     CCD22289.1 317 KEMTEEKGQSEETANKIGEYvKLNGSLKEIHSILsldENITNNPLAKDGLDEIATLMEFTKSFG-IDRYISFDLSLARGLDYYTGLIYEAVTaasa 411
                    5778888888999999999999998877766554111566666666666666666666666665.7899***********************9*** PP

                    ................TT-SS.....-SEEEEEECTTTGGGT-.......--EEEEEEEEHHHH CS
  tRNA-synt_His 275 ................egvgq.....aiarGGrYdelgaafgr.......arpAtGfsldleal 310
                                    e++++      ia+GGrYd+l+++f +       + p++G s+ +e+l
     CCD22289.1 412 pptnaqelkkkvksedEDASAyvgvgSIAGGGRYDNLVNMFAEasgkkstKIPCVGVSFGVERL 475
                    ********9999887633332555679**************55356666677********9987 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   6.2e-16   2.8e-12       1      93 [.     495     594 ..     495     595 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 6.2e-16
                     SEEEEESSSS...HHHHHHHHHHHHHHHHTTTSEEEEES.SSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEET....TTCEEEEEETTHH CS
  HGTP_anticodon   1 qvvviplnek...aeeleeyakklaeeLraagirveldd.snesigkkireadllgipfavvvGekelekgtvtvrdr....dtreqervsldel 87 
                     qv+v++++ +   +  ++++++ + +eL+++gi++e+ +  + +++k++  a+++g+ +av++G++e+ +g++ v+++    ++++ e +++++l
      CCD22289.1 495 QVFVMAFGGGkdwTG-YLPERMTITKELWNNGIETEYVYkTKANPRKQFDAAEKAGCQLAVILGKEEYVEGKLRVKRLgpefADDDGEVIDIKDL 588
                     799999998877555.889********************9***************************************9998889999****** PP

                     HHHHHH CS
  HGTP_anticodon  88 veklke 93 
                     v  +++
      CCD22289.1 589 VPTVQQ 594
                     *99987 PP

>> HGTP_anticodon2  Anticodon binding domain of tRNAs
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.3      0.24   1.1e+03     116     163 ..      83     129 ..      66     148 .. 0.54
   2 !   16.6   0.0   9.7e-07    0.0044      21     107 ..     513     600 ..     507     610 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.24
  HGTP_anticodon2 116 sskssaessqkedeassesseeleealaskeerqkevrvlvaatrskk 163
                      +++s+++++++ ++   +++++ +++++++++++++++v+ + +++ k
       CCD22289.1  83 RKMSTTTDTSAPAAVP-AETQQPQHPKHGSSKKKSKLQVSLKTPKGTK 129
                      2322222222222222.2333333444555556666666666666655 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 9.7e-07
  HGTP_anticodon2  21 sgvellqeLWahnIsAdlaldasksleelvskarddgvswiviikqqnkskskekplkvkslekke.dvd...ldldelvswlkqeirere 107
                      +++ + +eLW+++I+ + +++++  +    + a++ g++  vi  +++     e +l+vk+l  +  d d   +d+++lv+ ++q ++e +
       CCD22289.1 513 ERMTITKELWNNGIETEYVYKTKANPRKQFDAAEKAGCQLAVILGKEE---YVEGKLRVKRLGPEFaDDDgevIDIKDLVPTVQQKLSEIH 600
                      57899***********************************99998855...55566******98765444557899******999998865 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.7e-05      0.21      82     134 ..     192     247 ..     167     281 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.7e-05
                   EE-SSTHHHHHHHH.TTS-SSEEEEEEEEEEBSST..-SSSB-SEEEEEEEEEEET CS
  tRNA-synt_2d  82 lLRthttavqirtl.ekkkppikiisigrvfRrda..vDathlaeFhqveglvvde 134
                    LR   t   +r +  ++ + ik + i +v+Rrd+  + + ++ eF+q+++ ++++
    CCD22289.1 192 SLRYDLTVPFARFVaMNNIQNIKRFHIAKVYRRDQpaMTKGRMREFYQCDFDIAGT 247
                   567777777777775566689**************4444456889***99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4028.59
//
Query:       CCD22290.1  [L=831]
Description: hypothetical protein NDAI_0A01320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-29  102.8   5.2    1.1e-29  102.8   5.2    2.2  2  zf-HC5HC2H_2  PHD-zinc-finger like domain
      2e-27   95.3   3.4      2e-27   95.3   3.4    3.0  3  zf-HC5HC2H    PHD-like zinc-binding domain
    9.3e-14   50.7   3.3    9.3e-14   50.7   3.3    2.8  3  PHD_2         PHD-finger
    9.4e-10   38.2   3.9    9.4e-10   38.2   3.9    2.6  2  PHD           PHD-finger
    1.7e-08   35.0   2.3    1.9e-08   34.9   0.2    2.0  2  EPL1          Enhancer of polycomb-like
  ------ inclusion threshold ------
       0.11   12.4   0.2       0.11   12.4   0.2    2.7  3  C1_1          Phorbol esters/diacylglycerol binding domain (C
        2.2    7.9  13.1      0.034   13.8   3.3    2.3  2  zf-PHD-like   PHD/FYVE-zinc-finger like domain
        4.4    7.5   9.2         21    5.3   8.6    2.4  1  zf-RRPl_C4    Putative ribonucleoprotein zinc-finger pf C4 ty
        5.8    7.3  22.6        2.5    8.5   8.9    2.9  2  zf-RING-like  RING-like domain


Domain annotation for each model (and alignments):
>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.43   8.6e+02      54      84 ..     238     270 ..     203     277 .. 0.78
   2 !  102.8   5.2   5.6e-33   1.1e-29       3      97 ..     297     392 ..     295     416 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.43
  zf-HC5HC2H_2  54 lkekCllCkkr....kGaciqCskkeCktafHvtC 84 
                   + + C++C  +    + + + C    C+ a H  C
    CCD22290.1 238 SDQPCAICYGTnsdvTNTIVFCDG--CNIAVHQEC 270
                   567899998776665666667766..999999999 PP

  == domain 2  score: 102.8 bits;  conditional E-value: 5.6e-33
  zf-HC5HC2H_2   3 CvlCkkkgGalkktsderwvHvlCallvpevsfsnvaerepvd.vekikkerlkekCllCkkrkGaciqCskkeCktafHvtCalaaglvmeledl 97 
                   C++C++k+Ga+k+t+++ w+H +Cal++pe+ f+n + +ep++ + +i+++r+k+ C++Ckkr+GaciqC++k+C  a+HvtCa++agl+++ ++ 
    CCD22290.1 297 CIVCPSKTGAFKMTDNGIWIHNICALWLPELYFANLHYMEPIEgIGNIPSSRWKLFCYICKKRMGACIQCTHKNCFLAYHVTCARRAGLYLKWDRD 392
                   ******************************************************************************************998764 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.6      0.16   3.2e+02      35      65 ..     238     270 ..     216     273 .. 0.78
   2 ?   -1.9   0.0       2.1   4.2e+03      38      48 ..     296     306 ..     289     309 .. 0.84
   3 !   95.3   3.4     1e-30     2e-27       1      90 []     317     417 ..     317     417 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.16
  zf-HC5HC2H  35 kklkCylCkkk....vGaciqCskkkCkkafHvtC 65 
                 +++ C +C  +    +  ++ C+   C+ a H  C
  CCD22290.1 238 SDQPCAICYGTnsdvTNTIVFCDG--CNIAVHQEC 270
                 567899998443444667788887..*******99 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.1
  zf-HC5HC2H  38 kCylCkkkvGa 48 
                  C++C +k+Ga
  CCD22290.1 296 GCIVCPSKTGA 306
                 6******9998 PP

  == domain 3  score: 95.3 bits;  conditional E-value: 1e-30
  zf-HC5HC2H   1 HvvCalwipevvfeeekeiemeeiedvekikkerkklkCylCkkkvGaciqCskkkCkkafHvtCakeagllleee..eeke.............klks 84 
                 H++Calw+pe++f++ +   me+ie++ +i+++r+kl Cy+Ckk++GaciqC++k+C  a+HvtCa++agl+l+ +     +             kl+s
  CCD22290.1 317 HNICALWLPELYFANLHY--MEPIEGIGNIPSSRWKLFCYICKKRMGACIQCTHKNCFLAYHVTCARRAGLYLKWDrdV--SvgsvasnqvhlgnKLHS 411
                 99**************98..9*****************************************************88440..34455555678888**** PP

  zf-HC5HC2H  85 yCkkHs 90 
                 +C+kHs
  CCD22290.1 412 FCDKHS 417
                 *****6 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.6   3.2e+03      17      22 ..     244     249 ..     243     252 .. 0.76
   2 !   50.7   3.3   4.7e-17   9.3e-14       1      35 [.     253     286 ..     253     287 .. 0.96
   3 ?   -2.3   3.0       1.7   3.4e+03       5      19 ..     364     380 ..     361     383 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.6
       PHD_2  17 sCYGvs 22 
                  CYG +
  CCD22290.1 244 ICYGTN 249
                 7***86 PP

  == domain 2  score: 50.7 bits;  conditional E-value: 4.7e-17
       PHD_2   1 tnpllsCdkCsvaVHasCYGvskesdgeeWlCrrC 35 
                 tn +++Cd+C++aVH++CYG++ +++  +WlCrrC
  CCD22290.1 253 TNTIVFCDGCNIAVHQECYGIVFIPVD-SWLCRRC 286
                 699***********************6.******* PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.7
       PHD_2   5 lsCd..kCsvaVHasCY 19 
                 ++C   +C +a H  C 
  CCD22290.1 364 IQCThkNCFLAYHVTCA 380
                 67766689999998885 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   3.9   4.7e-13   9.4e-10       2      50 ..     242     287 ..     241     289 .. 0.91
   2 ?    4.6   7.2     0.016        31       1      30 [.     352     380 ..     352     384 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 4.7e-13
                 BTTTTS.TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   2 CavCkk.ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50 
                 Ca+C + +sd  +++v+CdgC+ ++Hq+C+++     +++  +wlC++C+
  CCD22290.1 242 CAICYGtNSDVTNTIVFCDGCNIAVHQECYGIVFI--PVD--SWLCRRCQ 287
                 ******99999**********************88..554..6******8 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.016
                 SBTTTTSTTSTTSCEEEE..TTTSCEEETTTS CS
         PHD   1 rCavCkkksdeeeelvqC..dgCkrwfHqkCl 30 
                 +C +Ckk     +  +qC  ++C  ++H++C 
  CCD22290.1 352 FCYICKK---RMGACIQCthKNCFLAYHVTCA 380
                 7******...79******4448*********7 PP

>> EPL1  Enhancer of polycomb-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.2   9.4e-12   1.9e-08     110     157 .]     155     199 ..      57     199 .. 0.74
   2 ?   -1.3   0.1       1.3   2.6e+03      20      51 ..     701     734 ..     675     769 .. 0.45

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 9.4e-12
        EPL1 110 eldd.eveYdMDEeDekWLeelnekrkkegvekisediFEivmdrlEke 157
                 +ld+  +eYdMDE+De +L+ l +         is+++FE++++ lEke
  CCD22290.1 155 HLDKfIIEYDMDEQDELFLQHLRQLL----SLVISHELFELLITVLEKE 199
                 3333689***************9993....468***************8 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
        EPL1  20 dgldesesee..eiseknsnkensqqavetgvdk 51 
                 ++++e ++++    +++   ++++ ++ ++ v++
  CCD22290.1 701 TDVEELDESQseLLQNILTGTNTEFSNGKKPVEH 734
                 3322211111001222222222222222222222 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   5.6e-05      0.11       9      45 ..     237     273 ..     232     277 .. 0.82
   2 ?   -3.8   0.5       6.5   1.3e+04      29      36 ..     281     288 ..     279     288 .. 0.75
   3 ?    4.5   6.8     0.016        32      13      46 ..     352     383 ..     346     387 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.6e-05
                 SS--B-TTT-SB--SSSS-EEEETTT--EE-CCCCTT CS
        C1_1   9 kqptfCkhCgeflwgkekqglkCswCkllvHkkChek 45 
                 ++ + C+ C    +    +++ C+ C++ vH++C+  
  CCD22290.1 237 SSDQPCAICYGTNSDVTNTIVFCDGCNIAVHQECYGI 273
                 55667888888886688999**************976 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.5
                 EEETTT-- CS
        C1_1  29 lkCswCkl 36 
                 + C+ C++
  CCD22290.1 281 WLCRRCQF 288
                 67999985 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.016
                 B-TTT-SB--SSSS-EEEE..TTT--EE-CCCCTTS CS
        C1_1  13 fCkhCgeflwgkekqglkC..swCkllvHkkChekv 46 
                 fC  C++ +      +++C  ++C l +H  C++++
  CCD22290.1 352 FCYICKKRM----GACIQCthKNCFLAYHVTCARRA 383
                 9********....8888883358*********9986 PP

>> zf-PHD-like  PHD/FYVE-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.3   1.7e-05     0.034       1      31 [.     242     272 ..     242     274 .. 0.95
   2 ?   -1.2   2.3       0.7   1.4e+03       2      30 ..     354     380 ..     352     403 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.7e-05
  zf-PHD-like   1 CdtCaeskdeekgqlvyCqGCslsyhkaClG 31 
                  C++C ++++  + ++v+C GC  + h++C G
   CCD22290.1 242 CAICYGTNSDVTNTIVFCDGCNIAVHQECYG 272
                  99******9999*****************98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.7
  zf-PHD-like   2 dtCaeskdeekgqlvyC..qGCslsyhkaCl 30 
                   +C+    ++ g+ ++C  + C l+yh +C 
   CCD22290.1 354 YICK----KRMGACIQCthKNCFLAYHVTCA 380
                  4443....45689999954579999999994 PP

>> zf-RRPl_C4  Putative ribonucleoprotein zinc-finger pf C4 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.6      0.01        21       3     106 ..     241     376 ..     239     378 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.01
  zf-RRPl_C4   3 kCkyClskklknlnetvyCeaCeiyfkvknekqkvelvpikelekislrdkLCtkCkeknekeke..ircetfeeylkklk.................. 81 
                  C  C   + ++ n  v+C+ C+i  +++     +  v      +i + + LC+ C+  n+   +  i c + +  +k                     
  CCD22290.1 241 PCAICYGTNSDVTNTIVFCDGCNIAVHQE----CYGIV------FIPVDSWLCRRCQFGNNDPDIgcIVCPSKTGAFKMTDngiwihnicalwlpelyf 329
                 59**********************99932....33333......3444567999999888776555677776555555555788888888999999999 PP

  zf-RRPl_C4  82 ......................lCkeCkervekvlkndfvknfllyk 106
                                       +C  Ck+r  ++++ +    fl+y+
  CCD22290.1 330 anlhymepiegignipssrwklFCYICKKRMGACIQCTHKNCFLAYH 376
                 99999999999999999999999999999999999999888888887 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   5.7     0.041        82      12      43 .]     257     286 ..     242     286 .. 0.80
   2 ?    8.5   8.9    0.0012       2.5       1      30 [.     353     382 ..     353     384 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.041
  zf-RING-like  12 vrCsnesCnvrlHvdCfqhyirthsskkCpkC 43 
                   v C    Cn+++H++C+   +    s  C +C
    CCD22290.1 257 VFCD--GCNIAVHQECYGIVFIPVDSWLCRRC 286
                   7799..***********999977888888888 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0012
  zf-RING-like   1 CeaCkeivtqGvrCsnesCnvrlHvdCfqh 30 
                   C +Ck+ +  +++C++++C  ++Hv C+++
    CCD22290.1 353 CYICKKRMGACIQCTHKNCFLAYHVTCARR 382
                   99*************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 5461.86
//
Query:       CCD22291.1  [L=1445]
Description: hypothetical protein NDAI_0A01330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.65   10.1   5.2       0.71    9.9   0.1    3.0  3  Arrestin_N  Arrestin (or S-antigen), N-terminal domain


Domain annotation for each model (and alignments):
>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.019   3.5e+02      22      55 ..     560     593 ..     548     605 .. 0.84
   2 ?    9.9   0.1     4e-05      0.71      29     138 ..     641     748 ..     631     756 .. 0.75
   3 ?   -4.6   0.7         1   1.8e+04      53      81 ..     777     804 ..     768     812 .. 0.60

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.019
                 EEE-CCCCTT.CEEEEEEEEEEEESSSSTTTTCC CS
  Arrestin_N  22 vlleteelkkarkvkielsgkartgweesevagk 55 
                 v+l+  e+ ++  + +els ++r++w +    ++
  CCD22291.1 560 VILSLHEKTDISTISVELSSDTRVYWHNGVPPER 593
                 89999*********************98665544 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 4e-05
                 CTT.CEEEEEEEEEEEESSSSTTTTCCCEEEEEEEEEEEEESTSSSSS.SSSSHHHHHHHH-TTEEEEEE---TTS--SECSGEEEEEEEEEEEEECCC CS
  Arrestin_N  29 lkkarkvkielsgkartgweesevagktfrkdltlkkkqeyleteksllkskkdsqekLpkGehafpFsfelPknlpsSfeGkaggvrYevkvtldrpw 127
                 + k+rk++ +++ +a t+   +++   + +   +l++  ++ + + +  ++++d  + L  G++ f     + +nlp S+    g+++Y++++  + + 
  CCD22291.1 641 ETKNRKIFKKFRSTAITQSHFQNKESFYDSLLNNLNS--TIAKIQGKYNRQNEDKRNFLDPGDYLFILPTIFTENLPESIYLPSGRITYMIRIATKLKS 737
                 4567999999999998888844433333333334444..4555555555677788888999*******************************9999888 PP

                 E--C.CCEEEE CS
  Arrestin_N 128 kidkkkkkvft 138
                 k d k ++  t
  CCD22291.1 738 KQDTKLETQNT 748
                 88887666555 PP

  == domain 3  score: -4.6 bits;  conditional E-value: 1
                 TCCCEEEEEEEEEEEEESTSSSSS.SSSS CS
  Arrestin_N  53 agktfrkdltlkkkqeyleteksllkskk 81 
                 ++ +++++ ++k++ e+le e+++ ++ k
  CCD22291.1 777 NKYQTNNNAEYKQD-EFLEIETKAKENLK 804
                 35556666667665.77777777655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1161  (0.0647554); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.48
# Mc/sec: 9013.75
//
Query:       CCD22292.1  [L=554]
Description: hypothetical protein NDAI_0A01340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.5e-116  388.3  41.0   5.5e-116  388.0  41.0    1.0  1  AA_permease    Amino acid permease
    1.3e-35  123.1  45.1    1.9e-35  122.6  45.1    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  388.0  41.0  6.1e-120  5.5e-116       2     475 ..      59     511 ..      58     514 .. 0.98

  Alignments for each domain:
  == domain 1  score: 388.0 bits;  conditional E-value: 6.1e-120
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaasi 99 
                  v +i+++g+iGtgl++++++ l+++Gp++++  y ++g v++l+ l+lge++t++p sg+f +ya++f +++++ +  +ny+f++++ +a +lta++ 
   CCD22292.1  59 VNMISIAGIIGTGLYLSTSKSLHTGGPASLFMNYTIMGGVVYLTLLALGEMSTYMPISGSFCVYARKFGSESFACALMWNYWFNDAVSVASDLTALQL 156
                  679*********************************************************************************************** PP

  AA_permease 100 liqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeeeg 196
                  ++ +w++ ++ +  w+ +++f++v++ +n++ v++ygeae++la++kiiaii+f+i++i++++g++p++++ gf++++   +     +++g       
   CCD22292.1 157 VMDYWKTSEHGFPYWAASLIFWFVVVCLNVIHVRFYGEAEYWLAMLKIIAIIIFFILSIVVNVGKNPQHEYiGFKNWTRGEA----PFVDG------- 243
                  *******999888****************************************************************99988....*****....... PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlaplina 294
                   +k+f+s+fv ++fa+ G+e+++++ gE+++P ++ Pk ++ v++ri+ifYv+s+++i + +p++++gl ++s+++ spf ++++++g +++++++na
   CCD22292.1 244 -IKGFASLFVSASFAYGGTESITLTNGEAENPIRNTPKIVKTVFWRILIFYVGSTFFIAMNIPYDYPGLDSKSIVT-SPFTLVFQMAGTKGAGSFMNA 339
                  .*************************************************************************99.********************* PP

  AA_permease 295 viltaalssansslysasRvlyslakdglaP.kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfR 391
                  vi t+++s+ n +l+++sR++y +  +g +P +++++ ++++vP++++l+++++++l++ ++ + ++  + +++l +i+++++ i wl+i ++++rfR
   CCD22292.1 340 VIMTSVISACNHALFAGSRIMYNMGLEGFLPaRIVSRTNRNKVPYVSVLITAAVGALCFGASFIGAG--TLWTWLQNIVGVSNQIAWLCIGITSIRFR 435
                  ***********************************************************66666666..***************************** PP

  AA_permease 392 kalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrp 475
                  k l++qg+ + el +k +++p+g+++v++++++i+li+++ a+++       w++++f++ yl +++f +++++++l ++ ++ 
   CCD22292.1 436 KGLEKQGKTH-ELIYKNWTYPYGPYFVIIFVSFIILIQGWSAFAP-------WNVSNFFSYYLELFVFPVCFIIWWLVKRDRFV 511
                  ********66.**********************************.......*************************9998875 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6  45.1   2.1e-39   1.9e-35       8     408 ..      61     481 ..      55     502 .. 0.84

  Alignments for each domain:
  == domain 1  score: 122.6 bits;  conditional E-value: 2.1e-39
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    +++i  +ig+g + ++  ++ +ggpa+++   ++++ +++  ll++ E+s+ +p sg   vy++++ ++ +a    w +wf  ++++ ++   a++
     CCD22292.1  61 MISIAGIIGTGLYLSTskSLHTGGPASLFMNYTIMGGVVYLTLLALGEMSTYMPISGSFCVYARKFGSESFACALMWNYWFNDAVSV-ASDLTALQ 155
                    5788889****99988998889****888888888888899********************************************88.77778888 PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililva.linirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdtffpngwpgvl 191
                      +  ++ +   +  + y+ a++i+++v+  +n+++++ ++ +  +l+ lki+ ++i++i+  ++ v+++ +++      +t ++  f +g +g++
     CCD22292.1 156 LVMDYWKTS---EHGFPYWAASLIFWFVVvCLNVIHVRFYGEAEYWLAMLKIIAIIIFFILSIVVNVGKNPQHEYigfknWTRGEAPFVDGIKGFA 248
                    888888644...34477888999998765169********************87778888777777777777655666665555567777888889 PP

  AA_permease_2 192 lgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei..anlsnlgsvaalffeavggkvvaiivvilials 283
                    + +  + ++++G es++  + e+++  +++pk    ++  +l++y++ ++++++ +p d+   ++ s + s+++l+f+++g k + ++++++i+ s
     CCD22292.1 249 SLFVSASFAYGGTESITLTNGEAENpiRNTPKIVKTVFWRILIFYVGSTFFIAMNIPYDYPglDSKSIVTSPFTLVFQMAGTKGAGSFMNAVIMTS 344
                    99999*****************999999********************************944334447778************************ PP

  AA_permease_2 284 llgaintavigssrvlealardgvlP.rffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllliigalilrkkrph 378
                    ++ a n a+++ sr+++ ++ +g+lP r  +++n+++ p++++ +ta v  +++ ++ ++ ++  ++l ++  +++ i +l + i+ +  rk  ++
     CCD22292.1 345 VISACNHALFAGSRIMYNMGLEGFLPaRIVSRTNRNKVPYVSVLITAAVGALCFGASFIGAGTLWTWLQNIVGVSNQIAWLCIGITSIRFRKGLEK 440
                    **************************************************888888877779**********************999999999999 PP

  AA_permease_2 379 lkr...........pgkilvaiigalfllfllvalffppkg 408
                    +++           p+ + ++ii++ f++++  + +f p +
     CCD22292.1 441 QGKtheliyknwtyPYGPYFVIIFVSFIILIQGWSAFAPWN 481
                    97778997766544333444444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3828.83
//
Query:       CCD22293.1  [L=864]
Description: hypothetical protein NDAI_0A01350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-85  288.3  25.3    1.5e-85  287.8  25.3    1.2  1  Adaptin_N        Adaptin N terminal region
      2e-06   28.1   0.2    7.7e-06   26.2   0.2    2.1  1  Alpha_adaptinC2  Adaptin C-terminal domain
     0.0004   20.9   3.1      0.025   15.2   0.2    3.7  4  Vac14_Fab1_bd    Vacuolar 14 Fab1-binding region
  ------ inclusion threshold ------
      0.028   14.7   0.1       0.16   12.2   0.0    2.2  2  zf-C2H2_8        C2H2-type zinc ribbon
      0.055   13.7   0.1         23    5.6   0.0    4.4  4  HEAT             HEAT repeat
       0.45   10.4   2.4         30    4.6   0.1    3.4  3  Op_neuropeptide  Opioids neuropeptide
       0.77   10.1   3.4         17    5.8   0.0    3.3  3  zf-CCCH_7        Chromatin remodeling factor Mit1 C-terminal 


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.8  25.3   5.7e-89   1.5e-85       1     522 [.      32     656 ..      32     658 .. 0.86

  Alignments for each domain:
  == domain 1  score: 287.8 bits;  conditional E-value: 5.7e-89
                 XHHHCCHHHHHHCCSSS...-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSS.SHHH CS
   Adaptin_N   1 eekriqqelaeilnsnk...dddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdp.nqli 95 
                 e++++++++a+++++ +    +++k++ +++kl+yl++lGe+++f+++e+++l+as+df +Krl+Yl  +ll++esedl++L+tn l +Dl++p n +i
  CCD22293.1  32 ERAIVTKQSAKVRTKLRddhLSHSKRRTNIQKLLYLYILGEQTHFGQVECINLIASDDFVDKRLGYLSTSLLLDESEDLLTLLTNILSNDLNHPsNRYI 130
                 578899***********9999999********************************************************************96599** PP

                 HHHHHHHHCCC--CCCHHHHHHHHHHHHT-....SSHHHHHHHHHHHHHCCCCCHHCCCCCH.HHHHHHCTT-SS....HHHHHHHHHHHHHH...... CS
   Adaptin_N  96 rglALrvLssirvpelaedlapaikkllkd....rspyvrkkAalailklykkdpdllrkql.veeikellsdkd....pgvvlaAvalleei...... 179
                 ++lAL++L+s+++ ela+dl+p+++k++k+    r+p + kk +++++kl+ kd++ll+  l +e i+  l+++     +gv+l+  +l++ i      
  CCD22293.1 131 VSLALNTLGSLTSIELARDLFPDVQKIIKHskfnREPLIMKKCLQCLAKLITKDSSLLEI-LdLEVIEYCLDSNLfrmnHGVLLSISKLFQAIllsyds 228
                 *****************************73333568*********************99.5478888888776455559******************* PP

                 ........HCCCCCCC............HHHHHHHCCHHHHH..........HCS-HHHHHHHHHHHCC---SSHHHH...HHHHHHHCGGCG...... CS
   Adaptin_N 180 ........kkndrlll............kllpklvrrLcnll..........teldpwlqvkiiklltrlarqepeersk.kellesllnllq...... 241
                         +      +            k +p l+++L  l+          ++ dp+lq+ +i++lt  ++ ++e ++  k   ++++ l+q      
  CCD22293.1 229 isrnndqyE------IenyntkvipfisKYIPTLFEKLLGLMnditpefnvqGTADPFLQCDLIYTLTLFFNFPKEIDDIsKHGDKFINVLIQvannts 321
                 *84444330......244445444577777778888877666**************************9988777766446455555666666656877 PP

                 ...CSSCHHHHHHHHHCCHCCCCST.....HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTTT.TTTCCCCSXXTTSXHHHHHHHHHHHCCC CS
   Adaptin_N 242 ...ssnnaVlletvnlivelapkne.....livlavnaLvrllsskdenlryvaLrtllkivkkepkavq.hldlkifllktdddvsirlkaldlllkl 331
                      ++ Vl+et + i++l++ ne     l++l +n L ++l+ kd+n++yvaL++l+k+   +p++vq h+++++++l+ d d+si+++a++ll+++
  CCD22293.1 322 sttGPGKVVLYETTRSIFSLKNFNEtemkpLYTLGINTLATFLKAKDNNTKYVALNSLVKVIPYDPESVQrHKKFILNCLN-DHDISIKMRAIELLFAI 419
                 76666789**************9999*******************************************************.***************** PP

                 XXTTTHHHHHHHHHHHTTSSXXHH..........HHHHHHHHHHHHHHHS.........CCHHHHHHHHHHHHHTTXXHHHHHHHHHHHHHHHHHSTTT CS
   Adaptin_N 332 vdesNvkeivkeLkkyvkevaded..........fksklvkaIgrlaekf.........atdaewvldvllellslsgesvkdeivevirdliqkvpel 411
                 ++  N+ e+++e++++++++  ++          +   ++++++   +kf          +d  w l++l+++l+l g++++ e +++i+  ++++++ 
  CCD22293.1 420 LNNGNLIELINEIMNFLENLYANQfknfnddwekMIHLIIDSLIVAFKKFsiaeetgnpSDDSIWKLKILIKILKLVGNFIDMETINDILISFNNTENI 518
                 *****************7777777677666655555555555555555559999*9**999999*********************************98 PP

                 STTC..HHHH.......CCTCCGXXSHHH..HHHHHHHHHHTTTTXTT...............HHHHHHCTTTTTTTSXH....HHHHHHHHHHHHHHH CS
   Adaptin_N 412 heei..iekL.......aellekieseea..raaaiWllGeygelvsn...........te.sasdllrslaekfvlese....kvklqiltalvKlyl 483
                  ++   i+++         l+++i+++++    + iW+lGey++ +             +e  ++++l+++ e++   ++    ++  ++lt+++Kl++
  CCD22293.1 519 DHKFqlISRMllislkpETLMDEIAENNIawNIVSIWCLGEYSDSLLLnknvainheviNEfTIASYLQKMDESYRIDKDvsakTLIHYLLTSALKLSV 617
                 776666****66665544455559999984456679********998889*********99**************654431111356679********* PP

                 CXGCC.THXHHHHHHHHHHHXXSHHHHHHHHHHHHHHCC CS
   Adaptin_N 484 tspdketqekliqlvlslatssdlevrdRaveylqllss 522
                   +dk   e+l+ l+l+ +++sdl ++ +av+y  l+++
  CCD22293.1 618 KLNDKRCIENLRRLILNRTKDSDLMIQLKAVQYDILFNQ 656
                 ********************99************99987 PP

>> Alpha_adaptinC2  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.2     3e-09   7.7e-06       4     105 ..     754     856 ..     751     860 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3e-09
                      EEEEETTEEEEEEEEETTSTTEEEEEEEEEE-SSS-EEEEEEEEEEBTTCEEEEEEE..S-S-B-TT.CEEEEEEEEEEESCTTS-EEEEEEEE CS
  Alpha_adaptinC2   4 vlyekddlqIgfkfekperpgqiritlsftNkssqpisnfsfqaavpkslklqlqpp..sstvlppn.pggqitqvllienpskkplrmrlris 94 
                      ++ ++ +++++ k+ +  + g  +++l+f+      i+n+++ +av+k++kl+l +   s+t+   + ++  i q+l++++  +++l++rl+++
       CCD22293.1 754 EIHSSENIEVYSKLIS-HEEGFFQMELYFKPLI--SINNLKTFCAVTKTQKLTLGQLfcSTTNNDTFpKHSIIRQSLKVTG--TGKLKLRLKLT 842
                      5677888888888888.8889999999998877..8*****************8775323333333368999*******88..8********** PP

                      EE.CTC..EEEEEE CS
  Alpha_adaptinC2  95 yk.vgq..aikeqi 105
                      ++ +++  + +eq+
       CCD22293.1 843 FEsNDTgsELSEQF 856
                      **655544555554 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.7   1.2e+04      64      82 ..     251     269 ..     242     278 .. 0.73
   2 ?   -0.8   0.0       0.9   2.3e+03      29      55 ..     357     383 ..     344     395 .. 0.79
   3 !   15.2   0.2   9.6e-06     0.025      30      83 ..     395     446 ..     387     460 .. 0.86
   4 ?    3.4   0.1     0.045   1.1e+02      14      71 ..     612     672 ..     602     701 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.7
  Vac14_Fab1_bd  64 kllneifdalvklvaDsde 82 
                    k++ ++f+ l  l+ D  +
     CCD22293.1 251 KYIPTLFEKLLGLMNDITP 269
                    5778889999988888755 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.9
  Vac14_Fab1_bd  29 vkpvlkcfsDkdsrvRyyacEslynia 55 
                    ++++ + ++ kd+ ++y a  sl  ++
     CCD22293.1 357 INTLATFLKAKDNNTKYVALNSLVKVI 383
                    666777889999*********998876 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 9.6e-06
  Vac14_Fab1_bd  30 kpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdes 83 
                    k +l+c++D+d  ++  a+E l+ i    +g++++l+nei + l +l+a + ++
     CCD22293.1 395 KFILNCLNDHDISIKMRAIELLFAILN--NGNLIELINEIMNFLENLYANQFKN 446
                    679**********************85..7899999******999999987666 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.045
  Vac14_Fab1_bd  14 aialekk..ikeyleeivkpvlkcfsDkdsrvRyyac..Eslyniakvakgevlkllneifd 71 
                    a+ l+ k   k+++e++ + +l+  +D+d  +   a+  + l+n    +k+ +l+ +  if+
     CCD22293.1 612 ALKLSVKlnDKRCIENLRRLILNRTKDSDLMIQLKAVqyDILFNQPANVKKVLLSAMP-IFE 672
                    444444433789******************9999887225699988888887777664.444 PP

>> zf-C2H2_8  C2H2-type zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.4e-05      0.16      44      81 ..     148     185 ..     136     196 .. 0.86
   2 ?   -1.3   0.0       1.1   2.8e+03      20      27 ..     789     796 ..     754     826 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.4e-05
   zf-C2H2_8  44 aetfpsmqelvahtklhykpnryfkcencllrfrthrs 81 
                  + fp +q+++ h+k+   p    kc +cl ++ t+ s
  CCD22293.1 148 RDLFPDVQKIIKHSKFNREPLIMKKCLQCLAKLITKDS 185
                 578*****************************999765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.1
   zf-C2H2_8  20 hlrvhlsp 27 
                 +l++ ++ 
  CCD22293.1 789 NLKTFCAV 796
                 23333332 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.15   3.8e+02       2      29 ..     114     143 ..     113     144 .. 0.82
   2 ?   -1.8   0.0       2.2   5.6e+03      15      28 ..     168     181 ..     163     183 .. 0.77
   3 ?   -1.2   0.0       1.4   3.6e+03       3      28 ..     358     383 ..     357     385 .. 0.81
   4 ?    5.6   0.0    0.0091        23       4      27 ..     396     419 ..     395     422 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.15
                 HHHHHHH.HT-SSHH.HHHHHHHHHHHHHH CS
        HEAT   2 lPlllkl.lsDpspe.VReaAakaLgalae 29 
                 l  +l++ l++ps + + + A+++Lg l +
  CCD22293.1 114 LTNILSNdLNHPSNRyIVSLALNTLGSLTS 143
                 55677777999999988*********9986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHH CS
        HEAT  15 eVReaAakaLgala 28 
                  + + ++++L++l+
  CCD22293.1 168 LIMKKCLQCLAKLI 181
                 56678999999886 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.4
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                 ++l + l+ ++ +  + A+++L++++
  CCD22293.1 358 NTLATFLKAKDNNTKYVALNSLVKVI 383
                 67788899999999999999998765 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0091
                 HHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgal 27 
                 ++l++l+D + ++ + A++ L a+
  CCD22293.1 396 FILNCLNDHDISIKMRAIELLFAI 419
                 699***************999776 PP

>> Op_neuropeptide  Opioids neuropeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.048   1.2e+02      16      27 ..     110     121 ..     105     123 .. 0.89
   2 ?    0.4   0.0      0.24     6e+02       7      19 ..     343     355 ..     341     360 .. 0.86
   3 ?    4.6   0.1     0.012        30       9      19 ..     738     748 ..     735     748 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.048
  Op_neuropeptide  16 LiTLfkNvIvkd 27 
                      L+TL+ N++ +d
       CCD22293.1 110 LLTLLTNILSND 121
                      9*******9987 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.24
  Op_neuropeptide   7 sWdErsqkPLiTL 19 
                       ++E   kPL TL
       CCD22293.1 343 NFNETEMKPLYTL 355
                      5789999*****9 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.012
  Op_neuropeptide   9 dErsqkPLiTL 19 
                       E+ qkP iTL
       CCD22293.1 738 TEQQQKPIITL 748
                      79********9 PP

>> zf-CCCH_7  Chromatin remodeling factor Mit1 C-terminal Zn finger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0065        17      30      74 ..     478     522 ..     462     528 .. 0.89
   2 ?   -2.4   0.0       2.4   6.2e+03      12      31 ..     572     591 ..     562     618 .. 0.58
   3 ?    3.3   0.2      0.04     1e+02       3      44 ..     729     771 ..     727     791 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0065
                 --B-----S--S-----EESS---HHHHHHHHHTT--SSS-B-TT CS
   zf-CCCH_7  30 ekDdpvfsykviekehrLvansvsklvldnflalysvddsvrCrc 74 
                 + Dd+++  k++ k  +Lv+n +    +++ l ++   +++  ++
  CCD22293.1 478 PSDDSIWKLKILIKILKLVGNFIDMETINDILISFNNTENIDHKF 522
                 67**********************************999998877 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.4
                 HHHHHHHHT----------- CS
   zf-CCCH_7  12 inlevkrkvekseyvrelek 31 
                 in+ev ++ + + y+++++ 
  CCD22293.1 572 INHEVINEFTIASYLQKMDE 591
                 45555555555555554432 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.04
                 TSS-HHHHHHHHHHHHHT-----------..B-----S--S--- CS
   zf-CCCH_7   3 deaaktlkiinlevkrkvekseyvrelek..Ddpvfsykvieke 44 
                 + ++++ + ++++ k+ +++++  +e++   +  v+  k+i +e
  CCD22293.1 729 NTTNNNSSSTEQQQKPIITLPDDAKEIHSseNIEVY-SKLISHE 771
                 678999*****************9999883344566.5666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5795.50
//
Query:       CCD22294.1  [L=200]
Description: hypothetical protein NDAI_0A01360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-26   90.4   4.2    8.4e-26   89.7   4.2    1.3  1  TB2_DP1_HVA22  TB2/DP1, HVA22 family


Domain annotation for each model (and alignments):
>> TB2_DP1_HVA22  TB2/DP1, HVA22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   4.2   4.7e-30   8.4e-26       1      77 []      71     147 ..      71     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 4.7e-30
  TB2_DP1_HVA22   1 PayaslkaleskeksdetkwltYWvvfafltvvesladvllswiPfYylfKllfllwlvlpqtqgatyvYekflrpl 77 
                    P+y sl al+++ek+d++++ltYW++f+fl+v+e+++  ++++iPfY+++K++fl+++ lp t+gat++Y++f++p+
     CCD22294.1  71 PTYLSLIALRTPEKKDDEQLLTYWIIFGFLNVIEFWSGAIIYLIPFYWFLKTIFLIYISLPVTGGATLIYKTFIQPI 147
                    99**********999999*********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1511.07
//
Query:       CCD22295.1  [L=1278]
Description: hypothetical protein NDAI_0A01370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-31  109.1   5.3    3.9e-30  105.0   1.6    2.3  2  Glyco_hydro_65m  Glycosyl hydrolase family 65 central catalyt
      1e-26   94.0   0.0    2.1e-26   93.0   0.0    1.5  1  Glyco_hydro_65N  Glycosyl hydrolase family 65, N-terminal dom
    6.9e-05   22.7   0.1    0.00045   20.1   0.0    2.5  2  Glyco_hydro_65C  Glycosyl hydrolase family 65, C-terminal dom
  ------ inclusion threshold ------
       0.08   12.1   0.0       0.14   11.3   0.0    1.3  1  Peptidase_M56    BlaR1 peptidase M56
       0.11   12.6   0.1       0.25   11.4   0.1    1.5  1  DUF3671          Protein of unknown function
        9.6    6.3   8.2       0.51   10.4   0.0    2.8  3  F5_F8_type_C     F5/8 type C domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_65m  Glycosyl hydrolase family 65 central catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   1.6   1.3e-33   3.9e-30       4     236 ..     540     758 ..     537     766 .. 0.85
   2 !    6.2   0.1    0.0014         4     269     314 ..     760     808 ..     755     844 .. 0.67

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 1.3e-33
  Glyco_hydro_65m   4 lfhllq...tlaa.adarldvgakGltGegYrGhvfWDtElfvlPlylltepevarnlLeyRynrleaArekAkekglkGAlyPwesasdGeEe 93 
                      l++ll    t++  +++ l ++  Gl+ + Y+G vfWD++++v P +l   p++a+n+ +yR ++  +Ar +Ak+ g  GA+yPw s++    +
       CCD22295.1 540 LYQLLAntrTYNVsEERGLPLAVGGLSSDSYGGMVFWDSDIWVQPALLPFFPQIAKNINNYRNATHAQARLNAKQYGYPGAVYPWTSGRY-ANC 632
                      566654111333325566779999****************************************************************93.344 PP

  Glyco_hydro_65m  94 sqelhlnirsgewepdaseeeiHvnaaiayavv.qYveatg..DeefleeeglellvetarfWasraeldkdkgryeidgviGPdEYeenvdnN 184
                      +        s+       + e+H+n +ia+a    Y++     D ++l+ +   ++ + a f++  ++++ + g+ye  +++ PdE+ ++++n 
       CCD22295.1 633 T--------SAGP---CVDYEYHINVDIAMATFsIYMNGGKdvDDNYLRYTTWPMVRDAAEFFTVYVKYNATLGKYETYNLTDPDEFADHINNG 715
                      4........3332...3589**********9752688876633689************************************************ PP

  Glyco_hydro_65m 185 aytnliaawnlelalealeeleeeaeklevkeeelekwekvleklylpidee 236
                      a+tn   +  l++a ++ ++l e+     v+     kw ++++++y+p ++ 
       CCD22295.1 716 AFTNAGIKTLLKWATDIGNHLGEY-----VD----PKWMEISHNIYIPRSKS 758
                      *****************9999999.....33....47889999999998875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0014
  Glyco_hydro_65m 269 lkaegdkvlesqviKQaDvllllyllkeefseeqikanld...fYeprt 314
                       + e+  ++ s  iKQaDv l +y l +  +e++++  ++   +Y  r 
       CCD22295.1 760 ITLEYSGMNSSVEIKQADVTLMVYPLGYINDESILNNAIKdlyYYSERQ 808
                      5677888899999************999888887765543231444433 PP

>> Glyco_hydro_65N  Glycosyl hydrolase family 65, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   6.9e-30   2.1e-26      10     227 ..     199     476 ..     193     477 .. 0.77

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 6.9e-30
                      -HHHHHHT-EE-SSEEE----TT.TT.--........................-EEETT-EE-T................TSSS-EE----EEE CS
  Glyco_hydro_65N  10 eglrEslftlGNGylGtRgafee.ey.sd....p...................gtyiaGvYdre........iseeanGypeeneelvnlpdwl 70 
                      e+++ ++ +++NGy+G R+++ +  y  d                        g++++++Y  +        +     +   + + + ++p+w+
       CCD22295.1 199 ENVYSRQPYVANGYIGSRIPNTGfGYaLDtlnlFtdaegslnngwplrnrryaGAFVSDFYSLQeklnstnfPE---LDNHGYSTVISSIPQWT 289
                      899********************76644566550566778888899999************9997776555422...34566788899****** PP

                      EEEEEETTEE..--GGGS...EEEEEEEEEETTTTEEEEEEEEE-TTS-EEEEEEEEEE-SSSTTEEEEEEEEEES......S--E.EEEEEEE CS
  Glyco_hydro_65N  71 glrlrvdgee..ldldeg...eildyereLdlreGvltrsltwrspagkevrveserfvsladrhlaairlevtpl......nfsg.evevesg 152
                      +l++++d++   ++++e    ++++y+++L++++G++t++++w +    +++v+se +++++   l++++le+          f+  +++v+++
       CCD22295.1 290 NLQFSLDNGSiwFNPQEIdktDVSNYQQNLSMKDGIVTTDMDWID---GMIHVKSEIWAHRKIYPLGMVSLEISLNvdsipdGFESvDLDVWDV 380
                      ********8889888665666**********************88...47************************8888888755446******* PP

                      EETT--B....................EEEEETTSS.......-EEEEEEEEEEEETTEE--SEE................SEEEEEEEEEE.- CS
  Glyco_hydro_65N 153 ldgdvan........ekhkdprka...levrtresg.......itvavaartrveasgeklevee................ekiaqtlsvel.k 211
                      ld+++++        +       +   +++  ++++       +     ++++++ +++++   e                e+i+++ +v+l k
       CCD22295.1 381 LDFNTSHrtvlndigY-------DddgIYMVIEPDNvpysnaaL----YSACTLQLENSTE---EhpfqfdedkdplmntnERISKVSHVTLsK 460
                      *******554433321.......134599999999977754432....3333333333322...123345558899999998888888866627 PP

                      TT-EEEEEEEEEEEET CS
  Glyco_hydro_65N 212 agetvtleKyvavats 227
                      a+ ++t++Kyv+++++
       CCD22295.1 461 ANPKLTVHKYVGIMST 476
                      899**********997 PP

>> Glyco_hydro_65C  Glycosyl hydrolase family 65, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.3   3.9e+03       5      14 ..     286     295 ..     285     295 .. 0.89
   2 !   20.1   0.0   1.5e-07   0.00045       1      49 [.     916     963 ..     916     965 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.3
                      TT-SEEEEEE CS
  Glyco_hydro_65C   5 eeWdglsFrl 14 
                      ++W+ l+F+l
       CCD22295.1 286 PQWTNLQFSL 295
                      69******96 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.5e-07
                      ----TT-SEEEEE.EEETTEEEEEEEESSEEEEEEES.SSTEEEEETTEEE CS
  Glyco_hydro_65C   1 PrLPeeWdglsFr.lryRGrrLrVrvtpeevtvtles.gepltievyGeev 49 
                      P LP   +g++ r ++y++++L++ +++++ t+ ++s g+p++i+v+ +++
       CCD22295.1 916 PLLP---GGIAIRnFKYMDQVLDIILNDHNGTIVHKSgGKPINIKVPNRKL 963
                      7788...9999*************************9899*******9976 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.8e-05      0.14      67     176 ..      59     162 ..      33     165 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.8e-05
  Peptidase_M56  67 saaskaplasaaskvlddkas........alatdvkkvewktilkilll.iWivgalilllyliaallvlkkrfvrklgklraeelkeaLkeakee 153
                     ++++ + +           +        ++ +  k+++++ti+k+ll+ i i+g +  +l  +a+   l ++f + +++ + +e  + ++  +  
     CCD22295.1  59 DSNNNNNYN-----------NdniptigeQRRQLNKTFNKATITKYLLAfIMIAGLI--ALAAVASTIDLSSAFSKGKSSQSMDEDINNIQPETPS 141
                    222222222...........1222344536666667889999999985514444444..5889999999999999999998888888888888888 PP

  Peptidase_M56 154 mqlkrnikirlsssidsPavlgl 176
                     +  ++  i+  s  ++P vlg+
     CCD22295.1 142 AY--KEGIISSTSDTNNPHVLGY 162
                    88..77789999999***99996 PP

>> DUF3671  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   8.5e-05      0.25      20      73 ..      69     122 ..      64     148 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.5e-05
     DUF3671  20 dkidelakkknndkkkfkkkvlkkyglllilpvllpliglivpilfeakskksl 73 
                 d+i  + ++  + +k+f+k ++ ky l +i+++ l +++ +  +++  +  ++ 
  CCD22295.1  69 DNIPTIGEQRRQLNKTFNKATITKYLLAFIMIAGLIALAAVASTIDLSSAFSKG 122
                 7888899999999*****************999999999888888665444333 PP

>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.8       1.3   3.9e+03      64     107 ..      51      93 ..      31      95 .. 0.70
   2 ?   -3.3   0.1       3.2   9.4e+03      67      86 ..     290     312 ..     285     326 .. 0.65
   3 ?   10.4   0.0   0.00017      0.51      16      56 ..    1052    1094 ..    1036    1142 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.3
                   EEEEEEEESSSSSEEEEEEECEEESSSSSSSEEEEEEEEEEEEE CS
  F5_F8_type_C  64 ksykiqvsddgetWttvkdekvpgnsdnstpvtntfdppvkary 107
                    + ++++ +d ++ +++ ++ +p+  ++ +  + tf++++ ++y
    CCD22295.1  51 NNTELYT-NDSNNNNNYNNDNIPTIGEQRRQLNKTFNKATITKY 93 
                   5555555.554477888888887777778999999999999888 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.2
                   EEEEESS.SSSEEEEEE.ECE.E CS
  F5_F8_type_C  67 kiqvsdd.getWttvkd.ekv.p 86 
                    +q+s+d g+ W + ++ +k+  
    CCD22295.1 290 NLQFSLDnGSIWFNPQEiDKTdV 312
                   57888887888877777433332 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00017
                    GGGSSSTTSSEEESSSSTTEEEEEEEEEE..EEEEEEEEEECS CS
  F5_F8_type_C   16 aaldGnkntaWsssssddkqwlqvdLgkp..kkidgvvtqgrq 56  
                     aldGn+ t+W +++++d++ l +dLg+   k+i++  + + q
    CCD22295.1 1052 SALDGNNYTHWQPADKKDNARLLIDLGEDniKEIRKGMILWGQ 1094
                    79**********9999999*******87422677777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.45
# Mc/sec: 8470.76
//
Query:       CCD22296.1  [L=384]
Description: hypothetical protein NDAI_0A01380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-30  104.6   0.4      1e-29  102.9   0.0    2.0  2  Cyclin_C_2  Cyclin C-terminal domain
    5.7e-10   39.0   0.8    1.3e-09   37.8   0.8    1.6  1  Cyclin_N    Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_C_2  Cyclin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.23   2.1e+03      29      76 ..     148     194 ..      93     215 .. 0.64
   2 !  102.9   0.0   1.2e-33     1e-29       1     103 [.     222     332 ..     222     333 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.23
  Cyclin_C_2  29 krareilkssalltDayflytPsqIalaallladeklaerYleeklgk 76 
                 +++  +++ + +l + ++ + P  +   +++la ++ + +   +++ k
  CCD22296.1 148 ATSISFFR-KFFLENSVMQFDPKNLVHTTVFLACKAENYFISVDSFAK 194
                 44445555.666667777777777777777776666554444444444 PP

  == domain 2  score: 102.9 bits;  conditional E-value: 1.2e-33
  Cyclin_C_2   1 hPfRpLeGflldLkal..gkslekriekaykrareilkssalltDayflytPsqIalaallladeklaerYleeklgkeesseks........aksell 89 
                 hP++pL+Gf+ld++++  gk++ ++++++y+r+++ ++ +alltDa++lytP+qI+la+ll++de+l ++Yle k+  +++++ +        ++s++l
  CCD22296.1 222 HPYKPLHGFFLDIQNIlhGKVDLNYMGQIYDRTKKKIT-QALLTDAVYLYTPPQITLAVLLIEDEPLITKYLELKFADNDNDD-NgnevkrkkKNSIDL 318
                 9***************99899999**************.*************************************9865544.34778888877889* PP

  Cyclin_C_2  90 ekllktiescrkll 103
                 + ll++i++c++++
  CCD22296.1 319 TVLLSVIKECKDVI 332
                 ***********998 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.8   1.5e-13   1.3e-09      40     126 ..     135     218 ..     105     219 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.5e-13
                 HHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N  40 evaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlvyitdeafteeeilemErliLetLnfdl 126
                  ++++++l +e+++++++++ +f+ ++sv + + + ++ t ++lA+K e+    +++ ++  ++   t+e il+ E ++Le L+f l
  CCD22296.1 135 VISQHLNLPTEIIATSISFFRKFFLENSVMQFDPKNLVHTTVFLACKAENY-FISVDSFAKKAK--STRESILKYEFKLLESLKFTL 218
                 57899*******************************************777.899999998866..889****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1053  (0.0587317); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2860.71
//
Query:       CCD22297.1  [L=712]
Description: hypothetical protein NDAI_0A01390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-51  172.8   0.1    1.6e-50  171.7   0.1    1.7  1  Peptidase_M41   Peptidase family M41
    8.7e-41  139.4   0.0    2.7e-40  137.9   0.0    1.9  2  AAA             ATPase family associated with various cellula
    4.3e-08   32.8   0.0    1.2e-07   31.4   0.0    1.8  1  AAA_lid_3       AAA+ lid domain
    1.2e-05   25.7   0.4    0.00014   22.3   0.4    2.5  1  AAA_16          AAA ATPase domain
    2.1e-05   24.8   0.0       0.13   12.6   0.0    2.9  2  AAA_22          AAA domain
    0.00057   19.2   0.0      0.001   18.4   0.0    1.4  1  TIP49           TIP49 P-loop domain
     0.0014   18.4   0.0     0.0069   16.1   0.0    2.0  2  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
      0.003   17.6   0.1      0.012   15.6   0.1    2.1  1  AAA_5           AAA domain (dynein-related subfamily)
     0.0045   17.0   0.0       0.87    9.6   0.0    2.9  2  AAA_14          AAA domain
  ------ inclusion threshold ------
      0.023   14.4   0.0      0.042   13.6   0.0    1.5  1  IstB_IS21       IstB-like ATP binding protein
      0.029   13.9   0.8       0.81    9.2   0.4    2.4  2  AAA_25          AAA domain
      0.034   14.3   0.0       0.16   12.2   0.0    2.2  2  AAA_33          AAA domain
      0.052   12.9   0.3       0.12   11.8   0.3    1.5  1  Mg_chelatase    Magnesium chelatase, subunit ChlI
       0.08   12.3   0.0       0.48    9.7   0.0    2.1  2  ATPase          KaiC
        0.1   12.6   0.0       0.29   11.1   0.0    1.7  1  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
       0.16   12.5   0.1       0.36   11.4   0.1    1.6  1  AAA_18          AAA domain
       0.24   11.0   0.3       0.49   10.0   0.3    1.4  1  Peptidase_M50B  Peptidase M50B-like
        0.3    9.6   4.3       0.46    9.0   4.3    1.2  1  TFIIF_alpha     Transcription initiation factor IIF, alpha su
       0.35   11.5  14.2       0.75   10.4  14.2    1.5  1  SPATA3          Spermatogenesis-associated protein 3 family
       0.37    9.7   4.1       0.57    9.1   4.1    1.2  1  Pacs-1          PACS-1 cytosolic sorting protein
        1.9    8.1  20.2       0.17   11.4  11.9    2.3  2  SR-25           Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.7   0.1   1.8e-53   1.6e-50       1     166 [.     557     711 ..     557     712 .] 0.97

  Alignments for each domain:
  == domain 1  score: 171.7 bits;  conditional E-value: 1.8e-53
                    XX--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS-----------TSS--BHHHHHHHHHHHHHHHHHHHHHHH..S-BGGGHHHHHHH CS
  Peptidase_M41   1 rvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgqalGltlslPeedklsltkeellarlavllGGraaEelifg..evttGasnDleka 94 
                    +v+++++++++A+HEaGHa++++++ +a+p++K+ti+PRg+alG+t++lPe+dk+ +tk+e+la+l+v++GG++aEeli+g  ++t+G+ +Dl++a
     CCD22297.1 557 MVLTDAARRATAFHEAGHAIMAMYTTGATPLYKATILPRGRALGITFQLPEMDKVDTTKKECLATLDVCMGGKIAEELIYGkdNTTSGCGSDLKSA 652
                    57899****************************************************************************999************ PP

                    HHHHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
  Peptidase_M41  95 tkiarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileek 166
                    t+ ar+m+t++Gmsd++Gpv+l e+ e             ++s+++++  d+ev e+++e+ er++++l++k
     CCD22297.1 653 TNTARAMITQYGMSDEVGPVNLAENWE-------------TWSNSIRNVADKEVIEILKESEERTRKLLTKK 711
                    *********************888554.............69***************************986 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   0.0   3.1e-43   2.7e-40       1     131 [.     347     476 ..     347     477 .. 0.98
   2 ?   -2.9   0.0       9.7   8.3e+03      26      51 ..     685     709 ..     653     710 .. 0.61

  Alignments for each domain:
  == domain 1  score: 137.9 bits;  conditional E-value: 3.1e-43
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vll+GppGtGKTlla+a a e+gv+f+ +sgse+ + yvg ++k+irelf++a++ a p i+fiDE+da++++r+ +++  +++++nqLl eldg++++
  CCD22297.1 347 VLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGAKRIRELFSQARARA-PAIIFIDELDAIGGKRNPKDQAYAKQTLNQLLVELDGFSQS 444
                 79******************************************************9.****************999*********************8 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                 ++ +i+igatn p+ ld+al r gRfd++++++
  CCD22297.1 445 TG-IIIIGATNFPEALDKALTRpGRFDKVVNVD 476
                 77.**************************9986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 9.7
                 EEEEETTTCSSSSTTHHHHHHHHHHH CS
         AAA  26 fleisgsellskyvgesekkirelfk 51 
                 + ++  +e++ ++++ese+++r+l++
  CCD22297.1 685 IRNVADKEVI-EILKESEERTRKLLT 709
                 4555555555.678888888888775 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.4e-10   1.2e-07       1      44 [.     499     542 ..     499     543 .. 0.96

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.4e-10
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 dvd   +A+ T+G SGA+l++l++ Aa  A +++  +++m+++e
  CCD22297.1 499 DVDPTLIARGTPGLSGAELSNLVNQAAVYACQQNAIAVDMSHLE 542
                 789999************************************97 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.4   1.7e-07   0.00014      23     125 ..     337     437 ..     320     450 .. 0.62

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.7e-07
      AAA_16  23 rp......elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala..avpelag 113
                 ++        vll+G++G+GK+ l+r+ + ++  d ++f++g   +         +     + + +r+l ++a++++++      ++a++    p++ +
  CCD22297.1 337 ESlggtlpKGVLLTGPPGTGKTLLARATAGEAGVD-FFFMSGSEFDE--------VYVGVGA-KRIRELFSQARARAPAIIFIDELDAIGgkRNPKDQA 425
                 4444446699*******************999988.88877766666........4444433.666666666555555554444444444444444444 PP

      AAA_16 114 aeasrllellkr 125
                  +++ l++ll +
  CCD22297.1 426 YAKQTLNQLLVE 437
                 444666666554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00015      0.13       8      26 ..     347     365 ..     344     382 .. 0.85
   2 !    9.0   0.0    0.0019       1.6      85     136 ..     398     458 ..     386     459 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00015
      AAA_22   8 lvvtGesGtGKTtllrrll 26 
                 +++tG++GtGKT+l+r  +
  CCD22297.1 347 VLLTGPPGTGKTLLARATA 365
                 589************9866 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0019
      AAA_22  85 alraravielliiDEaqhlr..s........eealeeLrsllnl..srkgvqliLvGtpelrkl 136
                 ++rara ++++ iDE + +   +        ++ l++L  l++l   ++++ +i++G +++ + 
  CCD22297.1 398 QARARA-PAIIFIDELDAIGgkRnpkdqayaKQTLNQL--LVELdgFSQSTGIIIIGATNFPEA 458
                 334444.49**********8761556778889999999..44445599*********9998775 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.2e-06     0.001      46      88 ..     337     380 ..     294     410 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.2e-06
                 XXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  46 kklaG...ravLlaGpsgtGktalaiaiskelgedvpfvalsgsev 88 
                 + l+G   ++vLl+Gp+gtGkt la a + e g  v f ++sgse+
  CCD22297.1 337 ESLGGtlpKGVLLTGPPGTGKTLLARATAGEAG--VDFFFMSGSEF 380
                 4455555589********************998..88999999985 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   8.1e-06    0.0069      35      71 ..     346     382 ..     310     419 .. 0.80
   2 ?   -1.2   0.0       1.8   1.5e+03      36      58 ..     504     526 ..     482     565 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 8.1e-06
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvlek 71 
                  vll+GpPG Gkt la+  a e gv++   sg   ++
  CCD22297.1 346 GVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDE 382
                 59************************99999987664 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.8
      RuvB_N  36 vllyGpPGlGkttlakiiakelg 58 
                 ++  G PGl  + l++++ +   
  CCD22297.1 504 LIARGTPGLSGAELSNLVNQAAV 526
                 3446999*999999999987654 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.4e-05     0.012       1      34 [.     346     379 ..     346     418 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.4e-05
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--T CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltr 34 
                 +vlL GppGtgK+ la+  a   +  ++ + +++
  CCD22297.1 346 GVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSE 379
                 59***************99988888888777776 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1      0.06        52      63      88 ..     303     328 ..     279     339 .. 0.73
   2 !    9.6   0.0     0.001      0.87       5      76 ..     347     415 ..     344     457 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.06
      AAA_14  63 ekktylflDEiqevpewekalkslvd 88 
                   kt + +D +q ++e++  l ++vd
  CCD22297.1 303 VAKTNVKFDDVQGCDEARAELEEIVD 328
                 3577799****************999 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.001
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelileklkeekktylflDEiqev 76 
                 +++tG+  +GKT l++  + e      ++++++  + ++      + ++ el+ +  +++   ++f+DE   +
  CCD22297.1 347 VLLTGPPGTGKTLLARATAGEAG---VDFFFMSGSEFDEVYVGVGAkRIRELFSQA-RARAPAIIFIDELDAI 415
                 799****************9999...899999988888755443331344555554.4457899*****8876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.9e-05     0.042      49      71 ..     346     368 ..     342     436 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.9e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgvea 71 
                 +++l+Gp+G+GK+ la a + ea
  CCD22297.1 346 GVLLTGPPGTGKTLLARATAGEA 368
                 689**************987655 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   0.00095      0.81      26      51 ..     339     362 ..     318     373 .. 0.77
   2 ?    2.1   0.0      0.15   1.3e+02     130     182 ..     392     448 ..     387     453 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00095
      AAA_25  26 vkgllpagelallaGapgtGKttlal 51 
                 ++g lp+g  +ll+G+pgtGKt la 
  CCD22297.1 339 LGGTLPKG--VLLTGPPGTGKTLLAR 362
                 55666755..68***********996 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.15
      AAA_25 130 vdaleaaieevegvrlvviDplsralgg.densnsd...v.galvealeriarrtgaa 182
                 +++l  ++++   ++ + iD l+++ g  ++++++    + ++l+  l+ +++ tg++
  CCD22297.1 392 IRELFSQARA-RAPAIIFIDELDAIGGKrNPKDQAYakqTlNQLLVELDGFSQSTGII 448
                 6677778888.45***********9999766666552222455555566666666655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.7     4e+03      59      93 ..     269     305 ..     254     329 .. 0.75
   2 ?   12.2   0.0   0.00018      0.16       2      32 ..     347     379 ..     347     475 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.7
      AAA_33  59 lnelarkalsagrnvildat.nlsrrera.rflklar 93 
                 +++l++   ++g+ +i+ +t +l+++e a + + +a+
  CCD22297.1 269 VFGLLTYGITEGFKYITENTsLLKNSEVAdKSVDVAK 305
                 4577888889999999999956666777425555554 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00018
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdt 32 
                 vll G+pG+GK+ la+  + + g  +++ s  +
  CCD22297.1 347 VLLTGPPGTGKTLLARATAGEAGvdFFFMSGSE 379
                 7899*************9999997655555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   0.00014      0.12      25      41 ..     347     363 ..     343     369 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
  Mg_chelatase  25 lllvGppGsGKtmlakr 41 
                   +ll+GppG+GKt+la++
    CCD22297.1 347 VLLTGPPGTGKTLLARA 363
                   89*************97 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00056      0.48      21      37 ..     346     362 ..     312     368 .. 0.83
   2 ?   -0.7   0.0      0.87   7.5e+02     122     163 ..     406     451 ..     389     461 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00056
      ATPase  21 vvlitGepGtGKtifal 37 
                  vl+tG pGtGKt++a 
  CCD22297.1 346 GVLLTGPPGTGKTLLAR 362
                 489***********985 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.87
      ATPase 122 rvviDsitgl...ayeekeavaReilrqlvrvlkk.lgvTailvse 163
                  + iD ++++    + +++a a+++l ql+ +l +  + T i++  
  CCD22297.1 406 IIFIDELDAIggkRNPKDQAYAKQTLNQLLVELDGfSQSTGIIIIG 451
                 566777766653144456667999*****99996615668888865 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00034      0.29       8      46 ..     337     371 ..     320     378 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00034
                 HHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   8 ealgkklakalgdvilLeGdLGaGKTtlvrglakalgve 46 
                 e+lg +l k     +lL+G+ G+GKT l+r+ a + gv+
  CCD22297.1 337 ESLGGTLPK----GVLLTGPPGTGKTLLARATAGEAGVD 371
                 444444444....7******************9998876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00042      0.36       1      18 [.     347     364 ..     347     392 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00042
      AAA_18   1 IlltGtpGvGKttlakeL 18 
                 +lltG+pG+GKt la++ 
  CCD22297.1 347 VLLTGPPGTGKTLLARAT 364
                 79************9975 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00057      0.49      24      41 ..     566     583 ..     555     585 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00057
  Peptidase_M50B  24 vvffHElGHalaalLtGg 41 
                     ++ fHE+GHa++a+ t g
      CCD22297.1 566 ATAFHEAGHAIMAMYTTG 583
                     699**********99876 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.3   0.00054      0.46     356     426 ..      69     143 ..      49     165 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00054
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXX CS
  TFIIF_alpha 356 ddeedsddsDideedsvslvkakKkkekk...keekvdsnessagnsrparpspeqkdskskrkaa.seeskspv 426
                  ++e+ s + D++  ++++++  k ++e++   k  +  s++ss+ +s+ ++p+p+q+  +    a+ ++e+++  
   CCD22297.1  69 QNETISTSTDSNASAASPAFETKQQQEQQhstKGSPSSSSSSSSPSSGAGTPPPQQTAVSHAILATqEQEANKDL 143
                  467778899999999999998777666541114455667777788899999999988865554444355666655 PP

>> SPATA3  Spermatogenesis-associated protein 3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  14.2   0.00088      0.75       4      91 ..      59     150 ..      56     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00088
      SPATA3   4 vkkkksearrrrdstsqqassestsqqpssesapqqpesestpsktssestsqqasp...estpqq.pasqalpapekrassrslvsqdtet 91 
                  ++  s+++ +++++s  + s+++   p+ e+++qq +++st  ++ss+s+s  +s+    + pqq  +s+a++a++++++ + l  +d+++
  CCD22297.1  59 QRRLYSDSKLQNETISTSTDSNASAASPAFETKQQQEQQHSTKGSPSSSSSSSSPSSgagTPPPQQtAVSHAILATQEQEANKDLTNPDSQA 150
                 567789******************************99999998888766666655544444444415689999****99999999999865 PP

>> Pacs-1  PACS-1 cytosolic sorting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.1   0.00067      0.57     189     331 ..      34     185 ..      16     194 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00067
      Pacs-1 189 kssdedssqkfipFvsevkvGlvesssstsvDsddaaalvsasllsssppssss.pagke.......satppsspsvssslsalsspsssasealelqv 279
                 +s+     + f  F  +  + l++ +     Ds  +++++s+s+ s++++ s + +++++       +++p ss+s ss++s++++p        +  v
  CCD22297.1  34 QSQIHYNKRSFSTFTTNRNITLIQRQRRLYSDSKLQNETISTSTDSNASAASPAfETKQQqeqqhstKGSPSSSSSSSSPSSGAGTPPP-----QQTAV 127
                 34455556667777778888888888877777777766666666666666555533322223423334455555555555555555544.....44445 PP

      Pacs-1 280 DYWta.aqpaekkkeeekkd.tg...kntlkstfrslqvsrlpssgeeaeal.ntlsm 331
                  + ++ +q++e++k+ ++ d ++   k  l+s++ +  vsr  + g  +++    l+m
  CCD22297.1 128 SHAILaTQEQEANKDLTNPDsQAtfyKLLLQSNYPQYVVSRFETPGIASSPEcMELYM 185
                 55444044444555555445433589***************99988433332234444 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  11.9    0.0002      0.17      17      79 ..      57     117 ..      40     147 .. 0.60
   2 ?    1.2   1.1      0.28   2.4e+02      57      86 ..     199     228 ..     168     240 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
       SR-25  17 ekkrkksskdssrsssasksqsrkassasekeeerskekkkkkrrrsssssssssssssssss 79 
                 +++r+  s ++ ++ + s+s++ +as+as + e+++++++++ ++   s ssssssss ss +
  CCD22297.1  57 QRQRRLYSDSKLQNETISTSTDSNASAASPAFETKQQQEQQHSTK--GSPSSSSSSSSPSSGA 117
                 455555555666999999999999999997664444444444444..3333333333333333 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.28
       SR-25  57 kkkrrrssssssssssssssssssssssss 86 
                   +++  ++ss  +  +s  ss s s+sss
  CCD22297.1 199 AVRQTLLTASSAGAVNPSLASSGSNSNSSS 228
                 333333333333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1124  (0.0626917); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.78u 0.35s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 4626.86
//
Query:       CCD22298.1  [L=563]
Description: hypothetical protein NDAI_0A01400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-32  112.2   0.0    3.1e-32  111.6   0.0    1.3  1  TPP_enzyme_N    Thiamine pyrophosphate enzyme, N-terminal TPP
    6.6e-27   93.9   0.0    2.9e-26   91.8   0.0    2.0  2  TPP_enzyme_M    Thiamine pyrophosphate enzyme, central domain
    3.1e-15   56.3   0.0    5.6e-15   55.4   0.0    1.4  1  TPP_enzyme_C    Thiamine pyrophosphate enzyme, C-terminal TPP
  ------ inclusion threshold ------
       0.07   12.9   0.0       0.14   11.9   0.0    1.5  1  CO_dh           CO dehydrogenase beta subunit/acetyl-CoA synt
      0.071   12.3   0.0       0.16   11.2   0.0    1.5  2  DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.0   8.6e-36   3.1e-32       2     169 ..       5     177 ..       4     179 .. 0.92

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 8.6e-36
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   t++++l+++L++ +v+++fg+pG+ +l+lld++ e +g+r+    +E +aa+aAdgyar++g + ++++t g+G ++al+++a+ + +++ +l+++g
    CCD22298.1   5 TLGRYLFERLSQVNVNTIFGLPGDFNLSLLDKIYETPGMRWAGNANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVG 100
                   8899********************************************************97.99999999************************** PP

                   E--CCCHH.....S..TC--T..-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  99 drptslrg.....qgvlqqel..dqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                    ++ s++      +++l +        + +++ + +  vt+ +++p +++r+irt  + +++Pvyl lp+++++ +v+
    CCD22298.1 101 VPSISSQAkqlllHHTLGNGDftVFHRMSANISETTAMVTDIATAPAEIDRCIRTT-YVTQRPVYLGLPANLVDLKVP 177
                   ********9777766666444555566677**************************.***************988776 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0   8.1e-30   2.9e-26       1     124 [.     201     324 ..     201     336 .. 0.90
   2 ?   -1.3   0.0      0.45   1.6e+03       3      23 ..     427     447 ..     425     456 .. 0.85

  Alignments for each domain:
  == domain 1  score: 91.8 bits;  conditional E-value: 8.1e-30
                   HHHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgs 96 
                   +e++++l+k+ak+pvil++  ++r++++ e r+l++ +++P + t+mgkg+i+e++p++ g ++g ++ ++++ea+e+aDl+l +Ga ++d++t gs
    CCD22298.1 201 LEEVLSLIKNAKNPVILADACCSRHDVKVETRKLIDITQFPSFVTPMGKGSIDEQNPRFGGvYVGTLSRPEVKEAVESADLILSVGALLSDFNT-GS 296
                   5899***************************************************************************************655.55 PP

                   TT.TTTTT-EEEEEESSCCCCTTCC--SE CS
  TPP_enzyme_M  97 ep.efapeakiihididpaeigknyqvdl 124
                   ++  ++  ++i+++++d+ +i ++  + +
    CCD22298.1 297 FSySYK-TKNIVEFHSDHIKIRNATFPGV 324
                   553544.448**********998876655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.45
                   HHHHHHHH-SSEEEEE-CHHC CS
  TPP_enzyme_M   3 kaaellkaakrpvilvGggva 23 
                    aae +  ++r+++++G g  
    CCD22298.1 427 FAAEEIDPKRRVILFIGDGSL 447
                   6899999**********9965 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   1.6e-18   5.6e-15      11     126 ..     397     511 ..     387     526 .. 0.75

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.6e-18
                   HHHTTSSSSEEEC..ETTTS-TTTHHHHHHHHHHH....STTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTT CS
  TPP_enzyme_C  11 rllkvkrprsylt..sgglgtmGyglpaAiGakla....kpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfggkrks 101
                   +  ++  p++++   + ++g++G++ +a +Ga++a    +p+r+v+ ++GDG+++ ++qe++t+vr nl+  +++lnN+gy   +  + p+ + ++ 
    CCD22298.1 397 QT-HF--PNNTYGisQVLWGSIGFTTGATLGAAFAaeeiDPKRRVILFIGDGSLQLTVQEISTMVRWNLKPYLFILNNNGYTIEKLIHGPTAQYNE- 489
                   43.33..344333337799***************65666889***************************************999988666555332. PP

                   TSBB.BS----HHHHHHHTTSE.EE..E CS
  TPP_enzyme_C 102 gpagkdlkpvdfaklaealGak.ga..r 126
                          ++  + kl e +Gak     r
    CCD22298.1 490 ------IQSWEHLKLLETFGAKdYEnhR 511
                   ......4566788888888888443443 PP

>> CO_dh  CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     4e-05      0.14       6      78 ..     183     254 ..     178     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4e-05
                 XXXXXXXXXXXX--EEE--SHHHHHHHHHSSSEEEEE-S--.-HH.HHHHHHHHHTSSSEEEEETHHHTT-G. CS
       CO_dh   6 iPfdeaaianskkatleealkvvakmikkakrPllivGpqvlkaeneeakekkilekklkvvatalkeaglkd 78 
                  P d    +n ++a++e   ++v  +ik ak+P+++      +  +++++ k i + + +   t++ +  + +
  CCD22298.1 183 TPIDLSLKPNDAEAEAEVL-EEVLSLIKNAKNPVILADACCSRHDVKVETRKLIDITQFPSFVTPMGKGSIDE 254
                 6666666677788888777.9************************************9999999976666664 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.1   4.1e+03     251     269 ..     199     217 ..     196     218 .. 0.85
   2 ?   11.2   0.0   4.4e-05      0.16     118     199 ..     420     500 ..     410     533 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.1
  DXP_synthase_N 251 eelikvleevkklkgpvll 269
                     e l++vl+ +k++k+pv+l
      CCD22298.1 199 EVLEEVLSLIKNAKNPVIL 217
                     678999**********997 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.4e-05
  DXP_synthase_N 118 saalGlavardlkgekkkvvaviGDgaltgGmafealnni.gelkkkllvilNdNemsisknvGalskylskllsskayeklk 199
                      a+lG a a++  + k++v+  iGDg+l    + + + ++   + k  l ilN+N  +i+k + + ++  ++++s ++++ l+
      CCD22298.1 420 GATLGAAFAAEEIDPKRRVILFIGDGSLQL--TVQEISTMvRWNLKPYLFILNNNGYTIEKLIHGPTAQYNEIQSWEHLKLLE 500
                     578999999999999*************85..5555555515567899************99988777777777766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4024.85
//
Query:       CCD22299.1  [L=517]
Description: hypothetical protein NDAI_0A01410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-33  115.0   0.7    1.9e-33  115.0   0.7    3.0  4  ArfGap    Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.7   1.1e-37   1.9e-33       2     112 ..      17     128 ..      16     133 .. 0.94
   2 ?    0.3   1.2     0.038   6.9e+02      65     103 ..     250     288 ..     232     301 .. 0.70
   3 ?   -2.5   0.1       0.3   5.3e+03      69      80 ..     316     327 ..     292     348 .. 0.54
   4 ?   -3.1   0.1      0.44   7.9e+03      89     114 ..     381     407 ..     372     410 .. 0.65

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 1.1e-37
                 HHHHHHCCSCCCCB-TTT-SBS--EEETTTTEEE-HHHHHHHCCS.TTT--EEETTTS---HHHHHHHHHTCHHHHHHHHTTTC-TTTSG.-TTCGHHH CS
      ArfGap   2 kalkellkepenkvCaDCgakeptWaslnlgvflCieCsgvHrslgvhiskvrsltldkwedeelellkalgNkkaneileaklpkeekr.skssskek 99 
                 k++++l+++ en+vC+DCg+k+ptW+s+ +gv+lCi+Cs+vHr+lgvhi++v+s tldkw+ ++l+ +k +gN+ka+e++ +++ k+  + s+ + + k
  CCD22299.1  17 KVFQKLATKLENRVCFDCGNKNPTWTSVPFGVMLCIQCSAVHRNLGVHITFVKSSTLDKWTINNLRRFKLGGNHKAREFFLKNNGKQFLNtSNVNAQIK 115
                 78999******************************************************************************9888888677888999 PP

                 HHHHHHHHHTCHT CS
      ArfGap 100 reefirakYeekk 112
                 +++ ++++Y+++ 
  CCD22299.1 116 YTSSVAKRYKDHL 128
                 99*******9876 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.038
                 HHHHHHHTCHHHHHHHHTTTC-TTTSG-TTCGHHHHHHH CS
      ArfGap  65 elellkalgNkkaneileaklpkeekrskssskekreef 103
                    + k++ N++a+++++++ ++ e++++++  e++++ 
  CCD22299.1 250 SRLTAKKIDNSNAEDLFNEYEKQAEEDKDQKILESKRKN 288
                 444567999999999999999877777555544444444 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.3
                 HHHTCHHHHHHH CS
      ArfGap  69 lkalgNkkanei 80 
                  + + N+++n+ 
  CCD22299.1 316 TELNNNNNTNNN 327
                 332233322222 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 0.44
                 TSG.-TTCGHHHHHHHHHHHHTCHTTC CS
      ArfGap  89 ekr.skssskekreefirakYeekkfa 114
                 +k+ +  +s  k++  i+++Y++ k +
  CCD22299.1 381 QKEaQRAASGPKYTGKIAERYSDSKAI 407
                 222355677788888889999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1510  (0.0842211); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3808.42
//
Query:       CCD22300.1  [L=377]
Description: hypothetical protein NDAI_0A01420, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2787.84
//
Query:       CCD22301.1  [L=253]
Description: hypothetical protein NDAI_0A01430, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1019  (0.0568353); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1965.47
//
Query:       CCD22302.1  [L=261]
Description: hypothetical protein NDAI_0A01440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-26   90.1   0.2    7.6e-26   90.1   0.2    2.4  2  Motile_Sperm    MSP (Major sperm protein) domain
    5.7e-05   23.3   0.1    0.00013   22.1   0.1    1.6  1  TMEM131_like    Transmembrane protein 131-like
     0.0047   16.4   6.9     0.0061   16.0   6.9    1.2  1  Plasmodium_Vir  Plasmodium vivax Vir protein
  ------ inclusion threshold ------
       0.24   11.4   5.9       0.52   10.3   5.9    1.6  1  DUF3439         Domain of unknown function (DUF3439)
        0.4    8.8   7.0       0.55    8.4   7.0    1.1  1  SSP160          Special lobe-specific silk protein SSP160
       0.62    7.1  11.1       0.74    6.9  11.1    1.0  1  GREB1           Gene regulated by oestrogen in breast cancer
        2.5    7.5   9.9        3.7    6.9   9.9    1.3  1  Endostatin      Collagenase NC10 and Endostatin
        2.6    7.3  24.6        3.7    6.8  24.6    1.1  1  CDC27           DNA polymerase subunit Cdc27
          4    7.7  23.6        6.7    6.9  23.6    1.2  1  MMR1            Mitochondrial Myo2 receptor-related protein
        6.7    6.2  15.6        1.9    8.0  11.9    1.8  3  EVI2A           Ectropic viral integration site 2A protein (E


Domain annotation for each model (and alignments):
>> Motile_Sperm  MSP (Major sperm protein) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.2   4.3e-29   7.6e-26       2     106 ..       4     107 ..       3     110 .. 0.89
   2 ?   -0.8   1.5      0.76   1.4e+03      14      85 ..     134     145 ..     113     176 .. 0.50

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 4.3e-29
                   SEEESSSEEEEESSTSSHEEEEEEEEE-SSSSEEEEEEES-TTTEEEESSEEEETTTCEEEEEEEEESSSSSTTSTC..CEEEEEEEEES-TT-STH CS
  Motile_Sperm   2 lkidPsdllvfaaelnkqgtsklklkNtskkrvaFkvkttapkkyrvrPnvGiikpgesveitvtlkpldeepsekk..kdkfviqylevpgdekde 96 
                   ++i P  +l ++++l +q+t++ +++N+s++++aFkvkttapk y+vrPn +i++pge+v+i+v++  l+eep+++   +dkf++++l +  + +  
    CCD22302.1   4 VEIKPD-VLEYKSPLIEQSTEYASITNNSEQTIAFKVKTTAPKFYCVRPNAAIVEPGETVQIQVIFLGLTEEPASDFkcRDKFLVITLPA--PYDLT 97 
                   678886.8888888999****************************************************9999776368***********..66666 PP

                   HHHHHHHHHH CS
  Motile_Sperm  97 keafkeawkk 106
                   ++ ++e+w++
    CCD22302.1  98 NKNVSEIWND 107
                   7788888876 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.76
                   SSTSSHEEEEEEEEE-SSSSEEEEEEES-TTTEEEESSEEEETTTCEEEEEEEEESSSSSTTSTCCEEEEEE CS
  Motile_Sperm  14 aelnkqgtsklklkNtskkrvaFkvkttapkkyrvrPnvGiikpgesveitvtlkpldeepsekkkdkfviq 85 
                    ++++                                                            ++k +i+
    CCD22302.1 134 TQEQQ------------------------------------------------------------EQKQTID 145
                   11112............................................................2222222 PP

>> TMEM131_like  Transmembrane protein 131-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   7.5e-08   0.00013       1      69 [.       4      69 ..       4      75 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 7.5e-08
  TMEM131_like  1 leisPpeLdFgesslgkaasrtvtvvNkhkkeklkllsvtsdsiefqssffeevvlpPggntslkvvFL 69
                  +ei+P +L+++ s+l + +++   + N + ++++    v +++++f+ +  + + ++Pg+  +++v+FL
    CCD22302.1  4 VEIKPDVLEYK-SPLIEQSTEYASITN-NSEQTIA-FKVKTTAPKFYCVRPNAAIVEPGETVQIQVIFL 69
                  689******96.567777777888888.3444443.46889***************************9 PP

>> Plasmodium_Vir  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   6.9   3.4e-06    0.0061     192     319 ..     118     255 ..      90     261 .] 0.65

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.4e-06
  Plasmodium_Vir 192 dekynpkkllsklsCknkspkeaeeklk.......qekaaeapellnkekaeqgksekslgseslssekpearkgve...........eqlvhal 268
                      +k + k l++k    ++  +e+ e++        q +  + +e +++ek+ +++++k+++++++ +ekp+  ++ +             +v  +
      CCD22302.1 118 SKKIKVKYLINKT---TQPTQEQQEQKQtidiqqqQQQPIATEEHTTEEKEPLNQQMKQQQQQEEVKEKPTIVEEKKliddeseeldnTPKVAPS 209
                     5555666666666...4444444444444444454444444556666777777777777777777777776655555889999999888888888 PP

  Plasmodium_Vir 269 tsassgtgndaspesiansssslesvseelssnfirniimaaailgtgifl 319
                     ts++ +t++d++++ ++++s++ +++++e s n +  i++      + +fl
      CCD22302.1 210 TSTTTTTSSDEDTATAKTTSTTATTTTSEGSMNIVPFIVI-----ALLAFL 255
                     8888888999999999999999999999988888888872.....223444 PP

>> DUF3439  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.9   0.00029      0.52      25      79 ..     192     247 ..     170     254 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00029
     DUF3439  25 avdpdsakcsgsgkpvrsiicpttttttttttttmpttttlpttt.kmsmvkvplv 79 
                  +d++s     + k   s    ttt++   t+t+  t+tt  ttt   sm  vp++
  CCD22302.1 192 LIDDESEELDNTPKVAPSTSTTTTTSSDEDTATAKTTSTTATTTTsEGSMNIVPFI 247
                 55555655555555555444443333333344444444444444425688888875 PP

>> SSP160  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   7.0   0.00031      0.55     110     324 ..     209     239 ..     186     256 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00031
      SSP160 110 sssatstssststtssssttssnsttttsnstsssnstssgltssasvvslidtiawvyqdssvgiaylmvsilalfygqsvsappyadlgipalpant 208
                 s+s+t+t+ss+  t+++ tts+ +tttts                                                                      
  CCD22302.1 209 STSTTTTTSSDEDTATAKTTSTTATTTTS---------------------------------------------------------------------- 237
                 12222222222222222222222222222...................................................................... PP

      SSP160 209 sgagvpqsvqikaaiayvnvtiyfitltgqqfedlqgpvatdcgcpnttsvaplvleweailaalealasssasanstssststststttststtttns 307
                                                                                                                    
  CCD22302.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

      SSP160 308 ttstnstsssnsstiag 324
                                 g
  CCD22302.1 238 ---------------EG 239
                 ...............22 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  11.1   0.00041      0.74    1137    1257 ..     115     234 ..      74     255 .. 0.32

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00041
       GREB1 1137 eessktspvkvekseskdavesglsskasakselseasaaaasaseeak..spkasvtseeeeseeskekekeslsketesqlsleaseqkealdak 1231
                  ++ sk+ +vk   +++++ ++++++ k++ + ++++ +++ a+++++++  +p ++ +++++++ee+kek +  ++   e++l  ++se+ +++++ 
  CCD22302.1  115 QAVSKKIKVKYLINKTTQPTQEQQEQKQTIDIQQQQ-QQPIATEEHTTEekEPLNQQMKQQQQQEEVKEKPTI-VE---EKKLIDDESEELDNTPKV 206 
                  222222222222222222222222222222222222.222222222221001111111111111111111111.11...111111111111111122 PP

       GREB1 1232 asskssssssssssassP..ssscslak 1257
                  a s+s+++++ss + ++   ++s+  + 
  CCD22302.1  207 APSTSTTTTTSSDEDTATakTTSTTATT 234 
                  2222222222222211111122222222 PP

>> Endostatin  Collagenase NC10 and Endostatin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   9.9     0.002       3.7      51     129 ..     132     220 ..      88     251 .. 0.48

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.002
  Endostatin  51 pllselek..kenevaavqpsPvvksskerlvll..earrktksskesvkakekeaskeeleekae................kkveesekslttarras 129
                 + ++e+++  ++++++++q++P++++++++++++  +++ k+++++e+vk+k +  +++      +                +    s++++tt+++ +
  CCD22302.1 132 QPTQEQQEqkQTIDIQQQQQQPIATEEHTTEEKEplNQQMKQQQQQEEVKEKPTIVEEK------KliddeseeldntpkvaP----STSTTTTTSSDE 220
                 22222222346777777788888887777555553233333333333333333222222......122223455555533321....222222221111 PP

>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  24.6    0.0021       3.7     207     346 ..      98     236 ..      92     242 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0021
       CDC27 207 kkkasaksnimksffkakpaekkkkteakeqkveeeseeekekedkeleddsaaeeeeeeekstkkekr.rqkklessdeeeeerekekekrkrlkkmm 304
                 +k+ s+ +n ++s fk+++  kk+k +  ++k+ +  +e++e+++ + + +++++++   e+ t +ek    +++++++  ++e+ kek    + kk+ 
  CCD22302.1  98 NKNVSEIWNDLESEFKQQAVSKKIKVKYLINKTTQPTQEQQEQKQTI-DIQQQQQQPIATEEHTTEEKEpLNQQMKQQQ--QQEEVKEKPTIVEEKKLI 193
                 6788999999****************999999888888888888887.4333334444444444443332233343333..333444455555667888 PP

       CDC27 305 eDeded.demedvpespvateeeetseppvllkeevekeevte 346
                 +De+e+ d+  +v++s  +t ++ ++e+    k+  + ++ t+
  CCD22302.1 194 DDESEElDNTPKVAPSTSTTTTTSSDEDTATAKTTSTTATTTT 236
                 8888774457778877755555555555543444444444443 PP

>> MMR1  Mitochondrial Myo2 receptor-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  23.6    0.0037       6.7      87     210 ..     110     237 ..      93     245 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0037
        MMR1  87 lnvekski.skltiketleqlre...eksqqksksaekekqkrsvaakseqesekve...eleksksereisetssaiSestlleledletteaetlnp 178
                 ++++++ +  k+ +k  +++  +   e+++qk+    +++q++++a+++++++ek++   ++++++++ e++e+ + + e++l + e+ e  + +t + 
  CCD22302.1 110 SEFKQQAVsKKIKVKYLINKTTQptqEQQEQKQTIDIQQQQQQPIATEEHTTEEKEPlnqQMKQQQQQEEVKEKPTIVEEKKLIDDESEE-LD-NTPKV 206
                 233333333333333333333222113333333333344445555555555555544111445555556666666666677777766333.22.22222 PP

        MMR1 179 nnsveekkpavektkspskrivSts.svassle 210
                   s+     ++  +++  ++  St+ ++ +  +
  CCD22302.1 207 APSTSTTTTTSSDEDTATAKTTSTTaTTTT--S 237
                 223333345666666677777777733222..3 PP

>> EVI2A  Ectropic viral integration site 2A protein (EVI2A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.9   5.1e+03      65      75 ..      25      35 ..      11      49 .. 0.46
   2 ?    3.4   4.9     0.027        48      30     116 ..     103     182 ..      85     191 .. 0.61
   3 ?    8.0  11.9    0.0011       1.9      32     148 ..     138     255 ..     123     260 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.9
       EVI2A 65 vdkkskstetl 75
                ++ +++s +t+
  CCD22302.1 25 ASITNNSEQTI 35
                22222223333 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.027
       EVI2A  30 elwavnetawdsiiqnktngrnksensntnpvtpevdkkskstetletetsspsvslapkseeelttpsvvrnsssttqstentsks 116
                 e+w+    + +s ++ ++ +++ + +   n +t+ +++++++ +t+ ++ +++++  + + ++e + p   ++  +++q  ++  k 
  CCD22302.1 103 EIWN----DLESEFKQQAVSKKIKVKYLINKTTQPTQEQQEQKQTIDIQQQQQQPIATEEHTTEEKEPL--NQQMKQQQQ-QEEVKE 182
                 3333....2234455566688888888888888888888888899998877777777777666666666..333333333.233333 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0011
       EVI2A  32 wavnetawdsiiqnktngrnksensntnpvtpevdkkskstetletetsspsvslapkseeelt.tpsvvrns..ssttqstentskskseifKkevCe 127
                  ++++t+  +  q +  + +++ +++++p  +++++++++ e  e +t  +   l  + +eel+ tp+v++++  ++tt+s e+t+ +k++ + + +  
  CCD22302.1 138 QEQKQTIDIQQQQQQPIATEEHTTEEKEPLNQQMKQQQQQEEVKEKPTIVEEKKLIDDESEELDnTPKVAPSTstTTTTSSDEDTATAKTTSTTATTTT 236
                 333444444445555566667777788999999999999999999999988888888888777615554443300333444555555555555433332 PP

       EVI2A 128 ennnkmamLiCliiiAvLfLi 148
                  +   ++ ++ +i+iA L  +
  CCD22302.1 237 SE--GSMNIVPFIVIALLAFL 255
                 22..3445789*****99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4196  (0.234034); expected 358.6 (0.02)
Passed bias filter:                      899  (0.0501422); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.40
# Mc/sec: 1966.81
//
Query:       CCD22303.1  [L=434]
Description: hypothetical protein NDAI_0A01450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-50  171.8   0.0      2e-50  171.4   0.0    1.2  1  Peptidase_M24  Metallopeptidase family M24
  ------ inclusion threshold ------
      0.013   15.0   0.1      0.023   14.2   0.1    1.3  1  HtrL_YibB      Bacterial protein of unknown function (HtrL_Yi


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   0.0   2.3e-54     2e-50       2     208 ..     118     421 ..     117     422 .. 0.92

  Alignments for each domain:
  == domain 1  score: 171.4 bits;  conditional E-value: 2.3e-54
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT...........TCEESSSSEEEEGGGGGSTTTBC...SSSB--TTEEEEEEEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhg...........arglafppivasgenaavlhytp...ndrvlkegdlvlidaga 83 
                    ++rk a+i+++++++v +++kpg+t  e+a++ie++t+k +g           ++g++fp  +++++n+ ++h+tp   +++vlk +d++++d+g+
     CCD22303.1 118 EVRKGAEIHRRVRKNVQNKLKPGMTLTEIADIIENATRKFTGaedlnsmenpkSQGIGFP--TGLSINHIAAHFTPnagDKTVLKHEDVMKVDFGV 211
                    68***************99*****************999999999999999999******..**************8877888************* PP

                    EETTEEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTB........CCGBSSCSEEEESS.SSSEE..EEEE CS
  Peptidase_M24  84 eydgyasDitrTvlvGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesagl........akffphglGHgvGl.evhde..gpsv 168
                    +++g ++D+++Tv++   ++++++l++av+ea++++ik++  +v+l++i++a++ev+es+++        +k++++++GH +G  ++h++  +p+v
     CCD22303.1 212 QVNGNIIDSAWTVSF---DDKYDNLITAVREATYTGIKEAGIDVRLTDIGEAIQEVMESYEVelngetfqVKPCRNLCGHNIGPyRIHGGksVPIV 304
                    ***************...788**************************************966668888899************88***87445556 PP

                    SSSTTCSSB--TTBEEEEEE......EEEEETTT.............................................................. CS
  Peptidase_M24 169 sresndgrkleeGmvftiEp......giyfapge.............................................................. 196
                    +  ++d++k+eeG++f+iE+      g++  +ge                                                              
     CCD22303.1 305 K--NGDNTKMEEGEHFAIETfgstgrGYVVTDGEcshyartpnvttmpslssakkllktiddkfgtlpfcrryldrlgeekylfalnqlvrqgivq 398
                    6..679**************999999877556778888888899999999999999999************************************* PP

                    ...........EEEEEBEEEEEE CS
  Peptidase_M24 197 ...........ggvriedtvlvt 208
                               +++++e+t+l++
     CCD22303.1 399 dypplvdiegsYTAQFEHTILLH 421
                    **********77********987 PP

>> HtrL_YibB  Bacterial protein of unknown function (HtrL_YibB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.6e-06     0.023      79     178 ..     138     240 ..     107     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-06
   HtrL_YibB  79 lprkilneikki..qkeesfttkldldvkknpeylsaey...vlvvnlktyflhkvikeklvktelvvWlDfGyvhnenvlrylkeWkyaledgkisli 172
                 +p  +l ei +i  +    ft   dl+ ++np +    +     ++   ++f  ++  + ++k e v+ +DfG   n n+++    W  +++d   +li
  CCD22303.1 138 KPGMTLTEIADIieNATRKFTGAEDLNSMENPKSQGIGFptgLSINHIAAHFTPNAGDKTVLKHEDVMKVDFGVQVNGNIIDS--AWTVSFDDKYDNLI 234
                 34678888888876566789999*********99865552215688999*******************************985..7*******999999 PP

   HtrL_YibB 173 kikknf 178
                 +  ++ 
  CCD22303.1 235 TAVREA 240
                 976654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1106  (0.0616878); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3112.85
//
Query:       CCD22304.1  [L=194]
Description: hypothetical protein NDAI_0A01460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-09   37.0   0.3    4.6e-09   35.9   0.3    1.6  1  Ribosomal_S21  Ribosomal protein S21


Domain annotation for each model (and alignments):
>> Ribosomal_S21  Ribosomal protein S21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.3   2.5e-13   4.6e-09       2      55 .]     123     175 ..     122     175 .. 0.97

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2.5e-13
  Ribosomal_S21   2 VvVkdgenierALkrfkrkveragvirevrrrryyekpsekrkrkkkearrrrr 55 
                    ++V++g n  + ++ ++  + ++ + ++ r++++y+kp+++   kk+ ++r+ +
     CCD22304.1 123 IDVRNG-NTIAGMRSLNSLIFSNEINKDRRKQQFYMKPGKAAELKKSLRHRKVF 175
                    89****.********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1551.23
//
Query:       CCD22305.1  [L=367]
Description: hypothetical protein NDAI_0A01470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-12   46.5   0.2    3.9e-12   45.6   0.2    1.5  1  SH3_1     SH3 domain
    8.7e-11   41.5   0.0    1.6e-10   40.7   0.0    1.5  1  SH3_9     Variant SH3 domain
    1.8e-08   33.9   0.0    3.9e-08   32.9   0.0    1.6  1  SH3_2     Variant SH3 domain
     0.0093   16.2   2.9      0.013   15.8   2.9    1.2  1  TctB      Tripartite tricarboxylate transporter TctB family
  ------ inclusion threshold ------
      0.025   14.6   0.0      0.063   13.4   0.0    1.6  1  SH3_10    SH3 domain
        6.4    7.0   8.7        1.1    9.5   0.1    2.7  2  DUF4234   Domain of unknown function (DUF4234)


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.2   1.3e-15   3.9e-12       1      48 []     312     359 ..     312     359 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 1.3e-15
                 EESSSBEXSS..TTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaee..sdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 +AlY Y+a +  + E+sf +G++++v++ +   Wwk+++ + g++G+iPs
  CCD22305.1 312 KALYSYQADDadAYEISFDQGEILKVSDIEGR-WWKAKREN-GQTGIIPS 359
                 7*********8899**************6666.*******9.6******8 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   5.3e-14   1.6e-10       1      49 []     313     363 ..     313     363 .. 0.98

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 5.3e-14
       SH3_9   1 Alypyepredd..eLsLqrGDvitvieesedgWlegsl.tGrtGlvPanyve 49 
                 Aly y+++++d  e+s+++G+++ v++  e+ W+ +++ +G+tG  P+nyve
  CCD22305.1 313 ALYSYQADDADayEISFDQGEILKVSDI-EGRWWKAKReNGQTGIIPSNYVE 363
                 8*************************99.9*******99************7 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0   1.3e-11   3.9e-08       2      56 ..     311     364 ..     310     365 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 1.3e-11
                 EEESS-B-S..CGCCB--B-TTEEEEEE..EEEECTTEEEEEE.CCCEEEEEGCGEEE CS
       SH3_2   2 vraiedyvg..edkseLsfkkGdvikvlslgskdsdgwwegev.gGrvGlfPsslvee 56 
                 v+a+ +y +  +d +e+sf +G+++kv      + + ww++ + +G+ G++Ps++ve 
  CCD22305.1 311 VKALYSYQAddADAYEISFDQGEILKVS----DIEGRWWKAKReNGQTGIIPSNYVEL 364
                 5677777776688899***********7....8999*****999************95 PP

>> TctB  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   2.9   4.3e-06     0.013      32     127 ..      31     141 ..       7     143 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 4.3e-06
        TctB  32 Plll.gvllallgllllv...aadgekeekearedwrkllklvlallaalllyal.lleplGfilatalflllll....g......reerkwlkalila 115
                 P+++ ++ +a+++ ++++    ++++++e + r+ w++ + +++++++++++y   l+++  ++l+  + +++++    +       ++rk   ++++ 
  CCD22305.1  31 PFAMsTLSIAIIAWIITIagsISSAADNEAFPRFTWWGIAYQFIIIVILMIFYSYdLINYYKLFLTGSISIAFVYttnsAtnlvysDGSRKAAASAGVI 129
                 76763455555554444489967888999999999*************************987777774443344445516678886677878888888 PP

        TctB 116 vvlallvyllFt 127
                 ++  + + ++F 
  CCD22305.1 130 LLSIVNLIWVFY 141
                 888777888885 PP

>> SH3_10  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.1e-05     0.063      14      59 ..     310     359 ..     306     362 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.1e-05
      SH3_10  14 aveALcdykqa.....evsiekgeevtLldnsdrekWkVqtssGaemtvPg 59 
                 +v+AL +y+ +     e+s+ +ge +++ d   r  Wk ++ +G++  +P+
  CCD22305.1 310 TVKALYSYQADdadayEISFDQGEILKVSDIEGR-WWKAKRENGQTGIIPS 359
                 79******99999999************999886.5**************9 PP

>> DUF4234  Domain of unknown function (DUF4234)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   4.6         1     3e+03      13      62 ..      36      85 ..      32      94 .. 0.63
   2 ?    9.5   0.1   0.00036       1.1      19      65 ..     101     143 ..      97     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1
     DUF4234 13 TlGIYslyWlykltrelnrlsgrkkttslllvflllslitcgiysivway 62
                Tl+I  + W+++++ ++   + ++     + + + + +i++ i++i+  y
  CCD22305.1 36 TLSIAIIAWIITIAGSISSAADNEAFPRFTWWGIAYQFIIIVILMIFYSY 85
                78888889999999999999999333333333333445555666555555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00036
     DUF4234  19 lyWlykltrelnrlsgrkkttslllvflllslitcgiysivwayklg 65 
                 + ++y++++++n + ++   +s +++    ++i+++i++++w++ +g
  CCD22305.1 101 IAFVYTTNSATNLVYSD---GSRKAA-ASAGVILLSIVNLIWVFYFG 143
                 7799*************...333333.236889999*******9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1072  (0.0597914); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2949.47
//
Query:       CCD22306.1  [L=137]
Description: hypothetical protein NDAI_0A01480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-33  115.7   0.0    1.5e-33  115.4   0.0    1.0  1  Ribosomal_L14  Ribosomal protein L14p/L23e


Domain annotation for each model (and alignments):
>> Ribosomal_L14  Ribosomal protein L14p/L23e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.0   8.6e-38   1.5e-33       4     121 ..      19     136 ..      17     137 .] 0.93

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 8.6e-38
                    SS-EEE--SSSSBSEEEEEEETT-.--....-EE-SSSEEEEEESSS-T...TTSSCEEEEEEEE-SS-EE-TTS-EEEESS-EEEEB-TTS-BSS CS
  Ribosomal_L14   4 lktrlkvaDNsgakevecikvlggkkr....kaasvGdiivvsvkkakpkgkvkkgdvvkavvvrtkkevrrkdGsvirfddnaaVllnkkgeplG 95 
                    +++++++aDN+ga+++++i+v g+++r    +aas+Gd+++++vkk+kp   + +++v+ a+vvr++k++rrkdG+++ f+dna V+ n kge++G
     CCD22306.1  19 TGAIMNCADNTGARNLYIIAVKGSGSRlsrlPAASLGDMVMATVKKGKP---ELRKKVMPAIVVRQSKSWRRKDGVYLYFEDNAGVIANPKGEMKG 111
                    5789******************998444556******************...899***************************************** PP

                    -.B-SBEEHHHHHH.-HHHHHTBSBE CS
  Ribosomal_L14  96 trifgpvarelrekkflkivslApev 121
                    + i+gpv +e+++  +++++s +  v
     CCD22306.1 112 SAITGPVGKECADL-WPRVASNSGVV 136
                    *************9.****9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1000.70
//
Query:       CCD22307.1  [L=297]
Description: hypothetical protein NDAI_0A01490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-09   36.3   9.9    6.4e-09   35.5   9.9    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    1.4e-08   34.4   8.7    2.1e-08   33.9   8.7    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    4.7e-08   32.9   8.1    9.6e-08   31.9   8.1    1.6  1  zf-RING_UBOX  RING-type zinc-finger
    1.6e-07   31.6  10.8    2.5e-07   30.9  10.8    1.3  1  zf-RING_2     Ring finger domain
    9.9e-06   25.3  10.9    2.9e-05   23.8  11.1    1.7  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    4.4e-05   23.3   9.6    7.7e-05   22.6   9.6    1.4  1  zf-RING_5     zinc-RING finger domain
    0.00011   22.0   9.0    0.00026   20.8   9.0    1.7  1  Prok-RING_4   Prokaryotic RING finger family 4
     0.0035   17.5  10.2     0.0068   16.5  10.2    1.5  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
     0.0078   16.2   4.9      0.013   15.5   4.9    1.3  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
  ------ inclusion threshold ------
      0.033   14.0   7.2      0.088   12.6   7.2    1.7  1  zf-RING_4     RING/Ubox like zinc-binding domain
      0.038   14.2   1.8      0.074   13.3   1.8    1.4  1  FYVE_2        FYVE-type zinc finger
       0.29   10.9  10.9       0.24   11.2   7.2    2.4  2  zf-RING_11    RING-like zinc finger
       0.61   10.4   6.9          2    8.8   7.0    1.8  2  zf-rbx1       RING-H2 zinc finger domain


Domain annotation for each model (and alignments):
>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   9.9   4.6e-12   6.4e-09       1      41 []     227     270 ..     227     270 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.6e-12
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC....TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks....rkkvkCPlC 41 
                 CpiC++ + e+  l++C+H fC++C+ ++++s    r+   C lC
  CCD22307.1 227 CPICMDPPDEAL-LTPCGHVFCCDCLFQMVNSsrtnRRDGHCALC 270
                 ************.*******************987666666***9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   8.7   1.5e-11   2.1e-08       3      48 ..     225     275 ..     223     277 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.5e-11
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH......TT-B-TTT--B-- CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekllk......rkkkCpiCrrpie 48 
                  +C+iC++ p +++l pCgH+ +C +C+ ++ +      r+ +C +Cr++++
  CCD22307.1 225 YQCPICMDPPDEALLTPCGHV-FCCDCLFQMVNssrtnrRDGHCALCRSSVK 275
                 68*******************.999*****99899999999*******9986 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   8.1     7e-11   9.6e-08       1      38 [.     227     267 ..     227     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 7e-11
  zf-RING_UBOX   1 CpIClelftdPlvlpCGHtFCreCl.w..elskslegafkC 38 
                   CpIC+++ ++ l++pCGH+FC +Cl +  ++s+ +++   C
    CCD22307.1 227 CPICMDPPDEALLTPCGHVFCCDCLfQmvNSSRTNRRDGHC 267
                   ******99988446***********9567777777777776 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9  10.8   1.8e-10   2.5e-07       2      44 .]     226     271 ..     225     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.8e-10
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssst......CPlCr 44 
                 +CpIC+   +++d++ll+pCgHvf+++Cl ++++ss+t      C lCr
  CCD22307.1 226 QCPICM---DPPDEALLTPCGHVFCCDCLFQMVNSSRTnrrdghCALCR 271
                 7****8...6668899999**********999888888899999****9 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8  11.1   2.1e-08   2.9e-05       1      33 [.     226     257 ..     226     270 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.1e-08
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLee 33 
                 +CpiC+d   ++  +tpCgHvfC +C+ ++ ++
  CCD22307.1 226 QCPICMDPPDEA-LLTPCGHVFCCDCLFQMVNS 257
                 7**********8.**************986654 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   9.6   5.6e-08   7.7e-05       1      43 [.     226     271 ..     226     272 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 5.6e-08
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHifCekClkkll......ekeavCpiCr 43 
                 +C++C+++    +++ lt+CgH+fC +Cl +         ++  C +Cr
  CCD22307.1 226 QCPICMDPP---DEALLTPCGHVFCCDCLFQMVnssrtnRRDGHCALCR 271
                 5********...*********************99999999999***98 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   9.0   1.9e-07   0.00026       1      41 [.     227     275 ..     227     279 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.9e-07
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeC.fdskdls.......sCPlCqrris 41 
                  C +C   + +a l pCgH++C +C f+  ++s        C lC++ ++
   CCD22307.1 227 CPICMDPPDEALLTPCGHVFCCDClFQMVNSSrtnrrdgHCALCRSSVK 275
                  99**********************4455577789999999*****9875 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5  10.2   4.9e-06    0.0068       1      42 []     227     270 ..     227     270 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.9e-06
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeq..llCplC 42 
                 CPiC+d   +    +CGh+fC  C++++ +++  +     C lC
  CCD22307.1 227 CPICMDPPDEALLTPCGHVFCCDCLFQMVNSSRTNRrdGHCALC 270
                 **************************999887665444778777 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   4.9   9.5e-06     0.013      34      84 ..     226     277 ..     223     278 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.5e-06
                 --TTCSTTTTTS-EEEBTTS-EEEHHHHHHHHHHH...STSSB-TTTSSB--BE CS
  zf-ANAPC11  34 tcpsckfpGddcplvlGkckhnfhlhcilkwlete...tskglcpmcrqtfklk 84 
                  cp c  p d+   +l  c h+f   c+++ ++++      g+c +cr ++klk
  CCD22307.1 226 QCPICMDPPDEA--LLTPCGHVFCCDCLFQMVNSSrtnRRDGHCALCRSSVKLK 277
                 5*********97..6789************998651115579*******99987 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   7.2   6.4e-05     0.088       1      45 [.     227     272 ..     227     275 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-05
   zf-RING_4   1 cplCdeeldetdkdlkpCeCgyqiClfCyhrile.....eeegrCPaCre 45 
                 cp+C+++    d++l   +Cg+ +C++C+ ++++     + +g C  Cr+
  CCD22307.1 227 CPICMDPP---DEALL-TPCGHVFCCDCLFQMVNssrtnRRDGHCALCRS 272
                 77776555...55544.489*************966554459*******8 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.8   5.4e-05     0.074      17     105 ..     187     278 ..     182     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.4e-05
      FYVE_2  17 rdeklrkkeeeRlgelkeklekekskrellgnqaklgethCilCleef.kllvnsk..rqCldCklnvCkkCsvenkkekvwlCkiCseaRe 105
                  + +l+  e++ ++ + e+ e+ek k +    ++ l+  +C  C+++  + l++ +  + C dC +++ ++  ++ ++ +  lC+   + + 
  CCD22307.1 187 EAIDLDAAEQQVIEIVDEEPENEKEKSQQHEPNKPLTAYQCPICMDPPdEALLTPCghVFCCDCLFQMVNSSRTNRRDGHCALCRSSVKLKD 278
                 6789999*********************99999************975234444443499********999988888888888876655555 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   7.2   0.00017      0.24       1      29 []     226     251 ..     226     251 .. 0.82
   2 ?    0.5   0.1      0.38   5.2e+02       2      17 ..     267     283 ..     266     285 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHtFHfkCI 29 
                 +C IC+++    ++  ++pC+H+F ++C+
  CCD22307.1 226 QCPICMDPP---DEALLTPCGHVFCCDCL 251
                 7*****985...455577******99995 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.38
  zf-RING_11   2 CsICLeefkpgq.alfi 17 
                 C+ C +++k ++ +l+i
  CCD22307.1 267 CALCRSSVKLKDvKLII 283
                 ********966636665 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   7.0    0.0014         2      12      55 .]     225     271 ..     220     271 .. 0.86
   2 ?   -0.2   0.1      0.89   1.2e+03       2      11 ..     266     275 ..     265     280 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0014
     zf-rbx1  12 eacieckapgdeecpvvlGeCgHaFHlhCiskWlkt......rkvCPlcr 55 
                  +c+ c  p de     l  CgH+F  +C+ + +++        +C lcr
  CCD22307.1 225 YQCPICMDPPDE---ALLTPCGHVFCCDCLFQMVNSsrtnrrDGHCALCR 271
                 5899*****999...67779************999988877667799997 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.89
     zf-rbx1   2 tCaiCrnele 11 
                 +Ca Cr++++
  CCD22307.1 266 HCALCRSSVK 275
                 69***99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1119  (0.0624129); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2242.29
//
Query:       CCD22308.1  [L=1047]
Description: hypothetical protein NDAI_0A01500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-13   50.8   0.1    8.8e-13   48.7   0.0    2.2  2  PH        PH domain
    1.4e-12   47.0   0.8    2.6e-12   46.1   0.1    1.9  2  SH3_1     SH3 domain
      2e-11   43.8   0.0    7.6e-11   42.0   0.0    2.1  2  SAM_2     SAM domain (Sterile alpha motif)
    6.2e-09   35.6   0.3    1.2e-08   34.7   0.3    1.5  1  SH3_9     Variant SH3 domain
     0.0011   19.3   0.0     0.0022   18.4   0.0    1.5  1  SAM_1     SAM domain (Sterile alpha motif)
     0.0042   17.3   0.0        4.9    7.5   0.0    3.0  2  PH_8      Pleckstrin homology domain
     0.0064   16.4   0.0       0.03   14.3   0.0    2.2  1  LURAP     Leucine rich adaptor protein
  ------ inclusion threshold ------
       0.05   13.3   0.0       0.13   12.0   0.0    1.7  1  SH3_2     Variant SH3 domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.1   6.9e+03      42      88 ..     555     599 ..     548     603 .. 0.71
   2 !   48.7   0.0   3.9e-16   8.8e-13       3     102 ..     765     878 ..     763     880 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.1
                 SSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEES CS
          PH  42 kepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqas 88 
                 ++p+ si   +++++e+   ++p +  + + + +++n+ ++ +++a 
  CCD22308.1 555 ERPTSSIYTASIRDEEE--LNEPHQQLSSAQKNNNNNRGSSAYFSAH 599
                 67788888888888876..6777777777777777666777777775 PP

  == domain 2  score: 48.7 bits;  conditional E-value: 3.9e-16
                 EEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC.........TTSSSSTSEEEEEESTSSS........TEEEE CS
          PH   3 keGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevva.........tedpkrkfcfelriverng........srtyl 84 
                 ++Gw++kkg g  + w+   f+L++++l+y+ +    +d + +g i+++ ++v+  ++          +++k ++cf+l+ ++ ++        +r+++
  CCD22308.1 765 YSGWMSKKGTGAMSVWRTSNFYLHGTRLSYFAST---SDTKERGLIDITAHRVSLLEKmnkivslyaASTGKGRYCFKLVPPQPGSrkgltftqPRVHY 860
                 89********************************...******************999********777**********6665444555544434**** PP

                 EEESSHHHHHHHHHHHHH CS
          PH  85 lqasseeerkeWikaiqs 102
                 ++++++e+++ W++++ +
  CCD22308.1 861 FAVDNKEDMRGWMATLLK 878
                 *************99865 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.1   1.2e-15   2.6e-12       3      48 .]      47      95 ..      45      95 .. 0.96
   2 ?   -3.7   0.0       4.3   9.6e+03       8      15 ..     229     236 ..     228     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 1.2e-15
                SSSBEXSSTTBXEBSTTEEEEEEEECSS...SEEEEEETTSTEEEEEEG CS
       SH3_1  3 lYDYeaeesdELsfkkGDviivleksed...gWwkgrlkgtgkeGliPs 48
                + +Y ++++dEL++++GD+i+vl ++e+   gW++gr+ +tg+eGl+P+
  CCD22308.1 47 INEYSKRMEDELDMRPGDKIEVLTDDEEyndGWYFGRNLRTGEEGLYPV 95
                679*********************************************5 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.3
                 XSSTTBXE CS
       SH3_1   8 aeesdELs 15 
                 a++sdELs
  CCD22308.1 229 ATSSDELS 236
                 899****8 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   3.4e-14   7.6e-11       2      66 .]     260     324 ..     259     324 .. 0.97
   2 ?   -2.9   0.0       3.4   7.5e+03       8      32 ..     743     767 ..     741     767 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 3.4e-14
                 GGHHHHHHHHHHHHTTT.GGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHHHHHH CS
       SAM_2   2 eswsledvaeWLrsigl.kqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkkiqelk 66 
                 esws+e+v+ ++   g+  q + +F +++i+g ++ll+l++ +L +l+i+s+g r++i+k+i+++k
  CCD22308.1 260 ESWSPEEVTAYFILCGFdVQSASKFQQHKISG-KILLELELAHLRELDISSFGTRFEIFKEIESIK 324
                 79******************************.*****************************9875 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.4
                 HHHHHHHHTTTGGGHHHHHHTTCSH CS
       SAM_2   8 dvaeWLrsiglkqytdnFrdagitg 32 
                 +++ +++ i+   ++++++da ++g
  CCD22308.1 743 QTSAFVEGIRSISVKEAMKDADYSG 767
                 677888999888999******9998 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.3   5.3e-12   1.2e-08       5      49 .]      50      99 ..      47      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 5.3e-12
       SH3_9  5 yepreddeLsLqrGDvitvi...eesedgWlegsl..tGrtGlvPanyve 49
                y  r +deL +++GD i v+   ee++dgW++g++  tG+ Gl+P+ +++
  CCD22308.1 50 YSKRMEDELDMRPGDKIEVLtddEEYNDGWYFGRNlrTGEEGLYPVVFTQ 99
                778899*************87656699*******668*********9986 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.9e-07    0.0022      21      64 .]     281     324 ..     261     324 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.9e-07
                 HHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHHHHHHHH CS
       SAM_1  21 adlFrageidgdaLlllteddLeklgvtllGHrkkIlyaIqrLk 64 
                 a++F++++i+g+ Ll+l   +L++l ++++G+r  I ++I+ +k
  CCD22308.1 281 ASKFQQHKISGKILLELELAHLRELDISSFGTRFEIFKEIESIK 324
                 789*********************************99998765 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0022       4.9       1      59 [.     767     823 ..     767     828 .. 0.86
   2 !    6.3   0.0    0.0052        12      21      53 ..     851     884 ..     849     894 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0022
        PH_8   1 gillkkrrkklqgyakRfFvLdlksstlsYyrddnssalrgkiplslaiisaneekrei 59 
                 g++ kk    +  ++   F L  + + lsY++++ +++ rg i ++   +s  e+  +i
  CCD22308.1 767 GWMSKKGTGAMSVWRTSNFYL--HGTRLSYFASTSDTKERGLIDITAHRVSLLEKMNKI 823
                 678888888888888888998..99********************99998887777665 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0052
        PH_8  21 LdlksstlsYyrddnssalrgkiplsla.iisan 53 
                 L +++  ++Y++ dn++ +rg ++  l+  i+++
  CCD22308.1 851 LTFTQPRVHYFAVDNKEDMRGWMATLLKtTIDID 884
                 6789999**************9864443266665 PP

>> LURAP  Leucine rich adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.3e-05      0.03      13      87 ..     285     362 ..     276     375 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.3e-05
       LURAP  13 elkrleeklrklklelanlraidvkllqqllainegieavkWlleekgtltsrcssltsslysl....desedtslrGs 87 
                 +++++  k++ l lela+lr +d+  +   + i   ie++k  ++  gt + r+s l    +      +++ + s++Gs
  CCD22308.1 285 QQHKISGKIL-LELELAHLRELDISSFGTRFEIFKEIESIKEAINMAGTQANRASLLMPPAFIDqqqpSNKGGESWKGS 362
                 5677777875.99****************************************99998766544111123334555555 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.6e-05      0.13       2      48 ..      44      92 ..      43      95 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
                EEESS-B-SCGCCB--B-TTEEEEEE..EEEECT....TEEEEEE..CCCEEE CS
       SH3_2  2 vraiedyvgedkseLsfkkGdvikvlslgskdsd....gwwegev..gGrvGl 48
                +++i +y    ++eL  + Gd i vl   +   +    gw++g++   G  Gl
  CCD22308.1 44 YICINEYSKRMEDELDMRPGDKIEVL-TDD---EeyndGWYFGRNlrTGEEGL 92
                67889999999***************.333...2344699*****98899997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1047 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1716  (0.0957109); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 6823.95
//
Query:       CCD22309.1  [L=679]
Description: hypothetical protein NDAI_0A01510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.9e-150  501.4  17.0   3.9e-150  501.0  17.0    1.1  1  EMP70         Endomembrane protein 70


Domain annotation for each model (and alignments):
>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  501.0  17.0  2.2e-154  3.9e-150       1     519 []      67     633 ..      67     633 .. 0.87

  Alignments for each domain:
  == domain 1  score: 501.0 bits;  conditional E-value: 2.2e-154
       EMP70   1 pydYydllpfCkpeeekkkese.sLgevLrGdrienspyelkfgkdeeckvlCtkkltkeelkklkelIkngYvvnwlvDn.LPvatsfvs........ 89 
                 py+Yydl+++C+p+  +kk+ + sL+e++rGdr ++s+y lkfg+d++c++lCt+k+tke+lk++k+l+++gYvv+wl+D+ LP+at+f+s        
  CCD22309.1  67 PYAYYDLPFTCPPTM-HKKPLHlSLNEIIRGDRKWQSDYILKFGQDDTCHILCTRKTTKEGLKNAKKLVEDGYVVQWLIDEeLPAATTFIStidqkkyy 164
                 8************84.4444446***************************************************************9999999999999 PP

       EMP70  90 aaGfplGfvdkeeekekyylnnhldfviryhkakeeekkrivgfevepksvkdeeeeeCp...kea.elel...eeekkeeeteipftYsVkwresedv 181
                 a+GfplGfvd   +++k+yln+h+++viry+++ + +k++ivgfev+pksv+d    +Cp   k++ ++e+   e+  +++ t ipftYsV+wre+  v
  CCD22309.1 165 ASGFPLGFVDP--DTGKVYLNTHVMLVIRYNTV-DVNKHTIVGFEVYPKSVSDF---HCPgasKNYePYEIvipEN--DDDLTFIPFTYSVYWREEYLV 255
                 99********8..899***************98.55778*************98...9*99987775577766433..679****************** PP

       EMP70 182 ewasRwdlyle.sv..ed..skihwfsiinslvivlllslivavillrtl..rkdiaryneeeeeeaqeesgWKlvhgdVfrpPkn.........sllL 264
                 +w++Rwdlyl+     e+  +++hw+s++ns+ iv+l+s++v+villr +  ++di++  +  ++   ee      +g V+ +++n         ++lL
  CCD22309.1 256 DWDHRWDLYLNsGElsENktTQFHWISLANSAGIVFLMSFVVSVILLRSFksSRDISTDIN--KS---EEHR----NGLVYEVARNwiinertplANLL 345
                 **********653355225799****************************44456663322..11...2211....23444444444445555558*** PP

       EMP70 265 svlvGsGvqlllmalvtlllallgflspsnrgslltvalllyvllgliaGYvsarlyktfggekwkkn..........tlltalllpgllflvffllnl 353
                 +++v++Gvq+l+++l++l++++     +   +s+lt+a+l++vl +++++Y+++ l +  ++  +kk+          ++l++++lpg++++v++lln+
  CCD22309.1 346 ILFVSMGVQFLFTVLGSLTISCSLNKLHDIGDSVLTMAVLCFVLGAFMSSYIGSVLLRLKNKATMKKQpikkgfhlffAILCGSFLPGIVMIVTLLLNS 444
                 ********************************************************98887667777789999************************** PP

       EMP70 354 ilwakessgalpfgtlvlllllwflisvPlvliGsllgfkkkaiehpvrtnqiprqipkqpwylkpl...................lsvllgGilpFga 433
                 i+wa++s++alpf+t+v++++++f++++Pl+++G+++++ + +++      ++    p+ +++ ++l                   l +ll+Gi+pF++
  CCD22309.1 445 IVWAHDSTHALPFKTVVMFITVYFIVCIPLSILGGYMANSS-KTKGSLTDPKFHTSRPELELFANKLkpkkhiflfgarlksikiaLPILLSGIFPFVI 542
                 ***************************************94.33334444455555555555555555556667777777887887999********** PP

       EMP70 434 ifielyfilsslwlek..iYylfgfLflvfllliittaevtilltYfqLcaedyr...WwWrSflvggssalYvflysiyYyftklkisgf 519
                 i++el+++++s+wlek  +Yy++gfLf+++lll+i++ e++i+ tY++L++ d +   W+W Sf++g s+a+Y+ lys+yY+f+ l+i+gf
  CCD22309.1 543 IYVELQYVYKSVWLEKtaFYYFYGFLFANILLLCIVVGEIAIIGTYTMLHMADRNntdWRWISFFMGSSCAWYMELYSLYYVFFILNIRGF 633
                 ***************9999********************************9888888******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1039  (0.0579508); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 4647.92
//
Query:       CCD22310.1  [L=201]
Description: hypothetical protein NDAI_0A01520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-17   61.4   0.1    9.3e-17   60.5   0.1    1.5  1  LSM         LSM domain
    1.4e-05   25.1   0.0      3e-05   24.1   0.0    1.6  1  SM-ATX      Ataxin 2 SM domain
  ------ inclusion threshold ------
       0.83   10.3   6.8        1.1    9.9   6.8    1.3  1  Pex14_N     Peroxisomal membrane anchor protein (Pex14p) cons
          4    6.1   6.7          5    5.8   6.7    1.1  1  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.1   2.1e-20   9.3e-17       2      66 ..       6      76 ..       5      77 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 2.1e-20
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET......EEEEEEEEEEEGGGEEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk......ekrklglvliRGnnivlis 66
                +l + ++++++velkng++++G+L+++D++mNl L++v+e++ +        e+ k  ++++RG+ i +i 
  CCD22310.1  6 LLTNAKGQQMRVELKNGEVIEGKLTNVDNWMNLTLSNVSEYKGSDAfaspqtEVMKSTEIYVRGTFIKYIN 76
                68999*************************************9988****988888899**********96 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   6.7e-09     3e-05       5      52 ..       4      53 ..       3      85 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 6.7e-09
                HHHHHTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS..... CS
      SM-ATX  5 lflltslvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkk....a 52
                l+llt+  G++ +v++knGev+eG ++ v+    ++++L ++ + k     a
  CCD22310.1  4 LYLLTNAKGQQMRVELKNGEVIEGKLTNVDN--WMNLTLSNVSEYKGsdafA 53
                79****************************9..***********99944331 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.8   0.00024       1.1      66     125 ..     139     196 ..      78     200 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00024
     Pex14_N  66 a...qeesasssatpqpqaasqtsqsspspsppaqqqqqqy.........rpPivtypefltkppkppppPl 125
                     + +++++++++q+q+++q+  + ++++++                 + +i++ p     ++ +p++P 
  CCD22310.1 139 GnrrSYQQNQQQHQNQHQQQHQQ--QYHNNNNE-------NrtnpngmggYVQIQQLP-----SNTNPQLPS 196
                 01111111111111111111111..11111111.......122222333334444443.....344445554 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.7    0.0011         5     270     308 ..     124     167 ..      76     192 .. 0.38

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0011
  Presenilin 270 e............seeeseeesseaessaeesseekeseessesseeeeee 308
                 +            +       + +  s ++++++++++++++++++ ++++
  CCD22310.1 124 DnynnnssgrrnyN-------AGNRRSYQQNQQQHQNQHQQQHQQQYHNNN 167
                 01111111111110.......111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2923  (0.163032); expected 358.6 (0.02)
Passed bias filter:                      783  (0.0436723); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1473.56
//
Query:       CCD22311.1  [L=1127]
Description: hypothetical protein NDAI_0A01530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-06   27.4   2.1      0.013   16.1   0.7    2.6  2  Ank_2     Ankyrin repeats (3 copies)
    6.4e-06   26.0   0.1    6.2e-05   22.8   0.1    2.8  1  KilA-N    KilA-N domain
    0.00034   21.1   1.2       0.78   10.4   0.0    3.2  3  Ank_4     Ankyrin repeats (many copies)
    0.00049   20.3   1.7       0.24   12.1   0.1    3.4  3  Ank_3     Ankyrin repeat
    0.00097   19.4   2.6      0.017   15.4   0.2    2.9  2  Ank_5     Ankyrin repeats (many copies)
     0.0015   18.9   0.3       0.45   11.1   0.0    2.9  2  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00033      0.98      18      48 ..     523     557 ..     499     594 .. 0.61
   2 !   16.1   0.7   4.2e-06     0.013      12      81 ..     612     684 ..     577     686 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00033
       Ank_2  18 egadpn...k.ngktaLhyAakngnleivklLleh 48 
                  ++d+n   + +g+++Lh+A+   n+ ++k+L+  
  CCD22311.1 523 PNFDINvniDeQGHSPLHWATAMANIPFLKILIVL 557
                 44555553325777777777777766667777742 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.2e-06
       Ank_2  12 lvklLl.egadpn..k.ngktaLhyAakngnleivklLlehadndgrtpLhyAarsghleivklLlekgadinl 81 
                 lv+l + +++dpn  +     +L+  a+++   ++k+ l+++dn g+tpLh+Aa + +le+++ +++ ga++++
  CCD22311.1 612 LVELSVnKSKDPNviNyYMDMILQNLAEED-YSLLKMCLNFQDNIGNTPLHLAALNINLELCNKFCYLGASMDI 684
                 222223333334332223334444333332.23455555558899*********99889***999988988765 PP

>> KilA-N  KilA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   2.1e-08   6.2e-05       6      94 ..      61     131 ..      56     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.1e-08
      KilA-N   6 qeiiirrvkdgyinatkllkaaaedtkriddWlrnkstkelleeleedynisekkksektisenrkakpgrlqGtYvhpdlalava.sW.i 94 
                  ++++rr++d++in+t+++k+         ++ + + tk l  e+ e++            +e  ++ +gr+qGt+++ + a+ +a ++ i
  CCD22311.1  61 AKVVMRRTRDDWINITQVFKIG--------KFSKAQRTKVLELEANEMK------------HEKVQGGYGRFQGTWIPLESAMFLAkKYtI 131
                 5799*****************9........4677788887777777772............3344688999********999999966655 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00026      0.78      25      55 .]     525     555 ..     514     555 .. 0.89
   2 ?   -1.3   0.0       1.2   3.6e+03      32      41 ..     602     611 ..     593     628 .. 0.63
   3 !    7.6   0.2     0.002       5.8      16      46 ..     644     667 ..     605     673 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
       Ank_4  25 adinaqdnrsGetalhiAakrgnveilklLl 55 
                  din  ++++G ++lh A  + n+ +lk L+
  CCD22311.1 525 FDINVNIDEQGHSPLHWATAMANIPFLKILI 555
                 5788888*********************997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
       Ank_4  32 nrsGetalhi 41 
                 +++G+ ++h+
  CCD22311.1 602 DANGRLPIHY 611
                 5666666665 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.002
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrg 46 
                 l++ +      +n q ++ G+t+lh Aa++ 
  CCD22311.1 644 LLKMC------LNFQ-DNIGNTPLHLAALNI 667
                 33333......4446.566********9885 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.011        32       2      23 ..     535     556 ..     534     562 .. 0.82
   2 ?   -1.7   0.0       2.4   7.3e+03      12      23 ..     604     614 ..     603     625 .. 0.57
   3 !   12.1   0.1   8.2e-05      0.24       2      19 ..     656     673 ..     656     683 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.011
       Ank_3   2 GetpLhlAarsgnleivkfLle 23 
                 G +pLh+A   +n++ +k L+ 
  CCD22311.1 535 GHSPLHWATAMANIPFLKILIV 556
                 89****9999999998888875 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.4
       Ank_3  12 sgnleivkfLle 23 
                 +g+l+ +++L+e
  CCD22311.1 604 NGRLP-IHYLVE 614
                 45555.666666 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 8.2e-05
       Ank_3   2 GetpLhlAarsgnleivk 19 
                 G+tpLhlAa+++nle++ 
  CCD22311.1 656 GNTPLHLAALNINLELCN 673
                 8*************9754 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.2     0.043   1.3e+02       6      49 ..     526     568 ..     524     573 .. 0.75
   2 !   15.4   0.2   5.8e-06     0.017      10      53 ..     650     693 ..     644     696 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.043
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49 
                 +++vn  +  g +pLh+A    + + +++L+  +a++ +++  G
  CCD22311.1 526 DINVNIDE-QGHSPLHWATAMANIPFLKILIVLNANALQCNLAG 568
                 47777754.555******99999999999998888877777655 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 5.8e-06
       Ank_5  10 nrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                 n +d+ gntpLh+Aa + +++++++++  ga+ ++ + +++++ 
  CCD22311.1 650 NFQDNIGNTPLHLAALNINLELCNKFCYLGASMDIPNMDNESPA 693
                 55789999******************999999888888888875 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.014        41       2      22 ..     535     555 ..     534     599 .. 0.71
   2 !   11.1   0.0   0.00015      0.45       2      11 ..     656     666 ..     655     686 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.014
                 SBBHHHHHHHHTTHHHHHHHH CS
         Ank   2 GnTPLHlAatngkkriiklLL 22 
                 G++PLH+A   ++   +k L+
  CCD22311.1 535 GHSPLHWATAMANIPFLKILI 555
                 99*****95233333666555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00015
                 SBBHHHHHH.H CS
         Ank   2 GnTPLHlAa.t 11 
                 GnTPLHlAa +
  CCD22311.1 656 GNTPLHLAAlN 666
                 9*******952 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1198  (0.0668191); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 7530.03
//
Query:       CCD22312.1  [L=1114]
Description: hypothetical protein NDAI_0A01540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-13   51.0   0.2      0.003   18.0   0.0    8.0  8  HEAT_EZ   HEAT-like repeat
    1.5e-13   50.4   8.4      2e-10   40.4   0.0    5.3  6  IBN_N     Importin-beta N-terminal domain
    4.3e-11   42.1   7.3      0.073   13.4   0.1    8.4  9  HEAT      HEAT repeat
      1e-10   41.9   0.9       0.43   11.0   0.2    6.7  7  HEAT_2    HEAT repeats
    0.00017   21.7  13.4      0.077   13.0   0.1    5.5  5  Cnd1      non-SMC mitotic condensation complex subunit 1
     0.0025   17.6   2.8        1.6    8.5   0.0    4.8  6  RIX1      rRNA processing/ribosome biogenesis
     0.0098   15.1   0.2      0.036   13.2   0.1    2.1  1  G-alpha   G-protein alpha subunit
  ------ inclusion threshold ------
      0.039   14.2   0.2        1.6    9.0   0.1    3.7  3  RICTOR_V  Rapamycin-insensitive companion of mTOR, domain 5
      0.061   13.4  12.8      0.045   13.8   2.4    4.8  5  Xpo1      Exportin 1-like protein
       0.13   12.4   2.2        3.5    7.8   0.1    3.6  3  YqfQ      YqfQ-like protein


Domain annotation for each model (and alignments):
>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.41   7.4e+02      25      48 ..      38      62 ..      24      64 .. 0.79
   2 ?    4.6   0.0     0.027        48      27      51 ..     123     147 ..     102     148 .. 0.93
   3 ?   -3.4   0.0       8.7   1.6e+04      25      52 ..     163     191 ..     157     192 .. 0.75
   4 !   18.0   0.0   1.6e-06     0.003       2      55 .]     375     428 ..     374     428 .. 0.95
   5 ?   -0.2   0.0      0.86   1.5e+03      43      53 ..     501     511 ..     469     541 .. 0.61
   6 ?    4.9   0.0     0.021        38       2      35 ..     593     626 ..     592     629 .. 0.90
   7 ?   -0.1   0.0      0.81   1.5e+03       7      32 ..     671     696 ..     667     714 .. 0.87
   8 !    9.3   0.0   0.00091       1.6       6      51 ..     884     929 ..     880     933 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.41
     HEAT_EZ 25 lvpeilpaLlalLnddsd.eVRaaA 48
                 +p+ +paL++ L++ +d  VR+ A
  CCD22312.1 38 PQPASVPALVNILQTQPDvGVRQLA 62
                68999********775555778776 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.027
     HEAT_EZ  27 peilpaLlalLnddsdeVRaaAaga 51 
                 p+++p L+++ +++++++R++A+  
  CCD22312.1 123 PDLIPNLIQAASNEDAATRQTAIFI 147
                 79********************875 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8.7
     HEAT_EZ  25 lvpeilpaLlalLnddsd.eVRaaAagaL 52 
                 ++++ l ++ ++ nd  + e+R  +a aL
  CCD22312.1 163 YIDDFLNLFSQTINDTASlETRSLSAQAL 191
                 56667777777788877778899999998 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 1.6e-06
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++Rra ++a++ +  g p+++  + ++i+pa +a+L+d+++ V+ aA+ + ++l
  CCD22312.1 375 FERRAILLAISVAVTGSPDYILSQFDKIIPAAIAGLKDSEPVVKLAALKCVSQL 428
                 58********99************************************999986 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.86
     HEAT_EZ  43 eVRaaAagaLg 53 
                 + R+a + a+g
  CCD22312.1 501 KLRCAIVSAIG 511
                 44444444444 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.021
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLla 35 
                 r+R+++++ +++la + +e  +p+++ ++p+  +
  CCD22312.1 593 RLRESGYAFIANLAKVYGENFAPFLKTVMPEIFK 626
                 89***************************98765 PP

  == domain 7  score: -0.1 bits;  conditional E-value: 0.81
     HEAT_EZ   7 AawaLGrlaggepellqplvpeilpa 32 
                 Aa+aL++la g + +  p+v+e l+ 
  CCD22312.1 671 AAAALSELAIGTKKHFLPYVEESLKI 696
                 899**99**99999999999987765 PP

  == domain 8  score: 9.3 bits;  conditional E-value: 0.00091
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLlalLnddsd.eVRaaAaga 51 
                 +A+ a++++   ++   +p+++e+l  L+  L++d++ eVR++Aa+ 
  CCD22312.1 884 SAVGAVSEIV-LGMKESNPFIQEMLESLIIILTSDKSlEVRGNAAYG 929
                 5555665533.47788899*************999999******985 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.1e-13     2e-10       1      71 [.      28      92 ..      28      95 .. 0.95
   2 ?   -1.2   0.0       1.1     2e+03      11      41 ..     122     150 ..     113     154 .. 0.69
   3 ?    2.7   0.1     0.064   1.2e+02      12      41 ..     165     193 ..     159     195 .. 0.88
   4 !    7.6   0.1     0.002       3.5      15      56 ..     261     301 ..     255     315 .. 0.81
   5 ?   -3.9   0.0       7.5   1.3e+04       9      21 ..     530     542 ..     528     553 .. 0.56
   6 ?   -3.4   0.0       5.4   9.6e+03      15      32 ..     907     923 ..     904     927 .. 0.70

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.1e-13
                HHHHHHHHHC.STCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlek.qpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnl 71
                A+k+L+   + qp +++al++il+++ ++  vRqlA++  ++li khW+      sl++ +k+qI+++ll+ 
  CCD22312.1 28 ATKTLQTVYYpQPASVPALVNILQTQPDV-GVRQLAGIEVRKLIPKHWN------SLDDATKTQIKTSLLQN 92
                78899999999******************.*******************......***************96 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.1
                 STCHHHHHHHHHHCTTSHHHHHHHHHHHHHH CS
       IBN_N  11 qpgflsallqilanseselevRqlAalyLkn 41 
                  p+  + l+q ++n++    +Rq A+ +L  
  CCD22312.1 122 WPDLIPNLIQAASNEDAA--TRQTAIFILLS 150
                 566666666666666655..9**99999865 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.064
                 TCHHHHHHHHHHCTTSHHHHHHHHHHHHHH CS
       IBN_N  12 pgflsallqilanseselevRqlAalyLkn 41 
                  +fl++ +q + +++s  e+R l+a+ L +
  CCD22312.1 165 DDFLNLFSQTINDTASL-ETRSLSAQALNH 193
                 68999999999999999.********9975 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.002
                 HHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC.GS CS
       IBN_N  15 lsallqilanseselevRqlAalyLknlitkhWsdeeekq.sl 56 
                   + lqi++n+e e+evR+ A++ +   ++++  +++ +q +l
  CCD22312.1 261 IKLALQIAVNKEIEEEVRVYAIQFIISALSYR--KSKVSQsKL 301
                 56789******************999999988..666665554 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 7.5
                 HCSTCHHHHHHHH CS
       IBN_N   9 ekqpgflsallqi 21 
                 +++++f + +++i
  CCD22312.1 530 QYLEQFIQNCSNI 542
                 3455666666666 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 5.4
                 HHHHHHHHHCTTSHHHHH CS
       IBN_N  15 lsallqilanseselevR 32 
                 l +l+ il++++s  evR
  CCD22312.1 907 LESLIIILTSDKSL-EVR 923
                 56778888888777.998 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.012        21       1      29 [.     125     153 ..     125     155 .. 0.91
   2 ?   -0.1   0.0      0.87   1.6e+03       2      27 ..     168     194 ..     167     197 .. 0.79
   3 !   13.4   0.1   4.1e-05     0.073       1      28 [.     402     429 ..     402     432 .. 0.91
   4 ?    2.3   0.0      0.14   2.6e+02       1      26 [.     486     512 ..     486     515 .. 0.84
   5 ?   -2.0   0.0       3.6   6.4e+03       9      28 ..     545     564 ..     533     566 .. 0.81
   6 ?   -4.1   0.3        10   1.8e+04      19      28 ..     670     679 ..     669     679 .. 0.81
   7 ?   -1.5   0.0       2.4   4.4e+03      16      29 ..     707     720 ..     703     722 .. 0.84
   8 ?    3.8   0.0     0.047        85       3      28 ..     868     893 ..     866     896 .. 0.91
   9 !   11.1   0.0   0.00022       0.4       4      30 ..     910     936 ..     906     937 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.012
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l+P l+++ s +++  R++A+  L  l+e
  CCD22312.1 125 LIPNLIQAASNEDAATRQTAIFILLSLLE 153
                 79*******************99988876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.87
                 HHHHHHHHT-.SSHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsD.pspeVReaAakaLgal 27 
                 l+l+ + ++D  s e R+ +a+aL ++
  CCD22312.1 168 LNLFSQTINDtASLETRSLSAQALNHV 194
                 7888888999555569*******9865 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 4.1e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 ++P+ +  l+D++p V  aA+k++ +l 
  CCD22312.1 402 IIPAAIAGLKDSEPVVKLAALKCVSQLT 429
                 78999999*****************997 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.14
                 HHHHHHHHH.T-SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkll.sDpspeVReaAakaLga 26 
                 l++ l  +l s +s++ R+a + a+g 
  CCD22312.1 486 LMNKLFYMLeSNQSSKLRCAIVSAIGS 512
                 6777888996779999*********96 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 3.6
                 HT-SSHHHHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLgala 28 
                 ++ ++ e R+++++++ ++a
  CCD22312.1 545 MTEDDIELRAMTFENISTMA 564
                 45578899******999988 PP

  == domain 6  score: -4.1 bits;  conditional E-value: 10
                 HHHHHHHHHH CS
        HEAT  19 aAakaLgala 28 
                  Aa aL +la
  CCD22312.1 670 VAAAALSELA 679
                 7999999986 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHHH CS
        HEAT  16 VReaAakaLgalae 29 
                  Re+A++++ ++++
  CCD22312.1 707 LRETALNTIWNIVK 720
                 59*******99987 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.047
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                 P++ +l +++s + R++A+ a+ +++
  CCD22312.1 868 PTIFTLFKSKSKNKRSSAVGAVSEIV 893
                 8999999***************9997 PP

  == domain 9  score: 11.1 bits;  conditional E-value: 0.00022
                 HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   4 lllkllsDpspeVReaAakaLgalaev 30 
                 l++ l sD+s eVR +Aa+ +g l+e+
  CCD22312.1 910 LIIILTSDKSLEVRGNAAYGVGLLCEY 936
                 456666*******************97 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.017        31      26      51 ..      36      62 ..      14     104 .. 0.74
   2 !   11.0   0.2   0.00024      0.43      17      54 ..     110     147 ..      87     192 .. 0.69
   3 !    8.2   0.0    0.0018       3.2       8      60 ..     369     430 ..     362     458 .. 0.73
   4 ?    1.2   0.0      0.27   4.8e+02       3      28 ..     489     514 ..     486     540 .. 0.73
   5 ?   -3.5   0.0       8.2   1.5e+04      16      26 ..     670     682 ..     667     712 .. 0.53
   6 ?    4.3   0.0      0.03        54      34      85 ..     868     928 ..     860     931 .. 0.73
   7 !    7.0   0.0    0.0044       7.8       1      45 [.     907     961 ..     907     966 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.017
      HEAT_2 26 rignpealpaLvell.ededpavRraa 51
                 +  p ++paLv++l + +d  vR+ a
  CCD22312.1 36 YYPQPASVPALVNILqTQPDVGVRQLA 62
                445566667777766444666666655 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00024
      HEAT_2  17 rraairaLgrignpealpaLvellededpavRraaaea 54 
                 ++  i++L   + p+++p L++++++ed+a+R++a+  
  CCD22312.1 110 AAISIEELEANKWPDLIPNLIQAASNEDAATRQTAIFI 147
                 3344455555566799*******************954 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0018
      HEAT_2   8 lendpdpevrraairaLg..rignp........ealpaLvellededpavRraaaeaLgaigd 60 
                 l ++ +   rra++ a+     g+p        +++pa +  l+d++p v  aa +  +++ +
  CCD22312.1 369 L-HSTNSFERRAILLAISvaVTGSPdyilsqfdKIIPAAIAGLKDSEPVVKLAALKCVSQLTT 430
                 4.566777788888888877334443333335589*********************9999853 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.27
      HEAT_2   3 aLlqalendpdpevrraairaLgrig 28 
                 +L   le+  + ++r a++ a+g+ +
  CCD22312.1 489 KLFYMLESNQSSKLRCAIVSAIGSAA 514
                 56777888889999999999998543 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 8.2
      HEAT_2  16 vrraairaLg..r 26 
                 v++aa+ +L+  +
  CCD22312.1 670 VAAAALSELAigT 682
                 5555555554321 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.03
      HEAT_2  34 paLvellededpavRraaaeaLgai....gd.....pealpaLkellddddddvvReaAae 85 
                 p+++ l ++++ + R  a+ a ++i    ++     +e l++L  +l++d++ +vR  Aa 
  CCD22312.1 868 PTIFTLFKSKSKNKRSSAVGAVSEIvlgmKEsnpfiQEMLESLIIILTSDKSLEVRGNAAY 928
                 6778888888888888888888888664411234667788888888888888888888875 PP

  == domain 7  score: 7.0 bits;  conditional E-value: 0.0044
      HEAT_2   1 ldaLlqalendpdpevrraairaLg......rignpea....lpaLvellededp 45 
                 l+ L+ +l++d++ evr +a+   g      +++ +++    l+aL ell+++d 
  CCD22312.1 907 LESLIIILTSDKSLEVRGNAAYGVGllceyaQFDVTSVyepvLKALYELLSTADQ 961
                 578999**9****************877766555444355559999999988775 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   2.6     0.031        55      22      88 ..     125     197 ..      83     279 .. 0.55
   2 ?    1.1   0.2       0.2   3.6e+02      75     128 ..     235     290 ..     209     299 .. 0.72
   3 !   13.0   0.1   4.3e-05     0.077      24     110 ..     404     496 ..     396     513 .. 0.73
   4 ?    4.1   0.0     0.025        44      15     106 ..     859     957 ..     847     980 .. 0.54
   5 ?    2.5   0.1     0.073   1.3e+02      44      99 ..    1006    1062 ..     993    1100 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.031
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakL...ilnd.mvkekg.flselaklleDenp.rVvanalaalteisek 88 
                 l+++L ++ + ed+  R+ta+++++ L   +l+  + +  + fl+ + + ++D+ + + ++++  al+ +s  
  CCD22312.1 125 LIPNLIQAASNEDAATRQTAIFILLSLleeFLPXsLTRYIDdFLNLFSQTINDTASlETRSLSAQALNHVSAL 197
                 4555666666666677777777777765553333233322236666666666655324555555555555554 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
        Cnd1  75 vanalaalteiseksenaiynllpdiisklsd..alnecsewgqitilefLlsyip 128
                  ++  ++l++ +  +++++ n   d+i+  ++    +e++e+ +++ ++f++s  +
  CCD22312.1 235 AKLIFNCLNDFLLLDSQLTGNTIADLIKLALQiaVNKEIEEEVRVYAIQFIISALS 290
                 44455566666666777888888888777776655578***********9998655 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 4.3e-05
        Cnd1  24 epLrkrLkDedpyVRktaaivvakL...ilndmvkekg.flselaklleDen.prVvanalaalteisek.senaiynllpdiisklsdalne 110
                 +   ++LkD++p V+  a+ +v++L   ++ d+ k  + fl  + ++++  +   + + a  al  ++e  + +ai++ l  +++kl   l++
  CCD22312.1 404 PAAIAGLKDSEPVVKLAALKCVSQLttdLQDDVAKFHEdFLPLIIDIIDSAKfVVIYNYATVALDGLLEFiAYDAIIKYLEPLMNKLFYMLES 496
                 555679*******************99999999998886777777777444414445668888888888877788888888888888765444 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.025
        Cnd1  15 vpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselakll.....eDenprVvanala...alteiseksenaiynllpdiiskls 105
                 +p++ e + + + + +k ++   R  a+ +v++++l +m +++ f++e+++ l     +D++ +V+ na +   +l+e+++ + + +y+ + + ++ l+
  CCD22312.1 859 FPKVFETFKPTIFTLFKSKSKNKRSSAVGAVSEIVL-GMKESNPFIQEMLESLiiiltSDKSLEVRGNAAYgvgLLCEYAQFDVTSVYEPVLKALYELL 956
                 666666666666666666666666666666666633.23333334444433222222566666666666543335566666655666665555555555 PP

        Cnd1 106 d 106
                 +
  CCD22312.1 957 S 957
                 4 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.073
        Cnd1   44 vvakLilndmvkekgflselaklleDenprVvanalaalteisek..senaiynllpd 99  
                  ++a+L l++ ++e + ++el   l  +n++V+ana     ei++   + ++  +++ +
  CCD22312.1 1006 LLAHLPLKTGFEEYNPIFELIMKLYQQNNSVIANATPKVVEILSAvfA-KEQERIKLE 1062
                  678887778888888899999999999999999999888888877642.333333333 PP

>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.5      0.17   3.1e+02      36     102 ..     116     182 ..      83     248 .. 0.55
   2 !    8.5   0.0   0.00088       1.6      42     118 ..     357     432 ..     310     441 .. 0.77
   3 ?   -1.5   0.0      0.97   1.7e+03      78     108 ..     477     507 ..     474     513 .. 0.73
   4 ?   -3.5   0.0         4   7.2e+03      86     115 ..     688     719 ..     685     722 .. 0.79
   5 ?   -0.5   0.0      0.49   8.8e+02      38      73 ..     854     893 ..     822     922 .. 0.67
   6 ?    3.1   0.0     0.039        71      45     105 ..     906     966 ..     846    1035 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.17
        RIX1  36 kseleelvhklvtrilsLlq...skspegrwaGvcLakvtveesg.eellssgstWlrallsiLekpdppa 102
                   e+++    +   i +L+q    +++++r +++ ++  + ee     l ++   +l+   + ++   +  
  CCD22312.1 116 ELEANK----WPDLIPNLIQaasNEDAATRQTAIFILLSLLEEFLpXSLTRYIDDFLNLFSQTINDTASLE 182
                 444444....4444444443111233344455555555444444445555555555555555555555555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00088
        RIX1  42 lvhklvtrilsLlqskspegrwaGvcLakvtveesgeellssgstWlrallsiLekpdppavlelaistlsriftlt 118
                 +    v+++ ++l+s ++ +r a +  + v v+ s++ +ls+  + + a ++ L+ + +p+v+ +a++++s + t +
  CCD22312.1 357 VASVIVEHLPTMLHSTNSFERRAILLAISVAVTGSPDYILSQFDKIIPAAIAGLKDS-EPVVKLAALKCVSQLTTDL 432
                 44458999***********************************************99.5666667777777776644 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.97
        RIX1  78 eellssgstWlrallsiLekpdppavlelai 108
                 + ++++ ++++++l+ +Le++++  +  + +
  CCD22312.1 477 DAIIKYLEPLMNKLFYMLESNQSSKLRCAIV 507
                 6788999999999999999997755444444 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 4
        RIX1  86 tWlrallsiLekp..dppavlelaistlsrif 115
                 ++++  l+iL+++  ++  + e+a++t+ +i 
  CCD22312.1 688 PYVEESLKILNEQveESYGLRETALNTIWNIV 719
                 67888999999998777888888888887775 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.49
        RIX1  38 elee....lvhklvtrilsLlqskspegrwaGvcLakvtv 73 
                 +l +    + + ++  i +L +sks  +r  +v  +  +v
  CCD22312.1 854 SLASdfpkVFETFKPTIFTLFKSKSKNKRSSAVGAVSEIV 893
                 3333666677888999999999999999999988776555 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.039
        RIX1  45 klvtrilsLlqskspegrwaGvcLakvtveesgeellssgstWlrallsiLekpdppavle 105
                  l + i  L ++ks e r  ++  +++++e+ +  + s +++ l+al+ +L+  d++a++e
  CCD22312.1 906 MLESLIIILTSDKSLEVRGNAAYGVGLLCEYAQFDVTSVYEPVLKALYELLSTADQKALTE 966
                 46666777889999999999999999999999999999999*******9999998877765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1     2e-05     0.036     102     208 ..     526     647 ..     255     660 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
                 S-HCHHHH.......................HHCCHHC....-HCHHHHHHHHCCSHHHHHHHC..CGCCTT--TTHHHHHCTHHHHCSTT----CHHH CS
     G-alpha 102 kkveasliaklssateee.............qeiefnp....raevgedikaLwndpgiqelye..rrnkiklednaeyFlddleritspdYlptddDi 181
                 k++ + l +++++ +++e                  ++     + v+ +  a + dp + + y+  r ++ +l ++   F+ +l +++ +++ p  + +
  CCD22312.1 526 KTSVQYLEQFIQNCSNIEgmteddielramtF----ENistmARAVRSETFAPFADPLVTAAYDaiRTDSARLRESGYAFIANLAKVYGENFAPFLKTV 620
                 33333333333333333344443344433331....2244445678889999999*********866677889999999***************99999 PP

                 HCS-----SEEEEEEECT-TEEEEEEE CS
     G-alpha 182 lkarlktvGisetkfevdsklefrivd 208
                 +    kt+G se++fe + + +  + d
  CCD22312.1 621 MPEIFKTLGLSEYQFEGEGDELAALAD 647
                 9999***********976444444444 PP

>> RICTOR_V  Rapamycin-insensitive companion of mTOR, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.5   4.5e+03      26      53 ..     120     150 ..     109     153 .. 0.66
   2 ?   -0.7   0.0      0.95   1.7e+03       3      39 ..     719     757 ..     717     764 .. 0.69
   3 ?    9.0   0.1   0.00091       1.6      21      58 ..     901     936 ..     884     939 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.5
    RICTOR_V  26 y...divedivelaeespvlslRGtafyvLg 53 
                 +   d+++++++ a + +  +     f  L+
  CCD22312.1 120 NkwpDLIPNLIQAASNEDAATRQTAIFILLS 150
                 2344899999999999888764444455555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.95
    RICTOR_V   3 lKaaLWaiGhigss.elGiellde.ydivedivelaees 39 
                 +Ka+L+a G ++ s ++Gi+  +   + v +i++ a+e+
  CCD22312.1 719 VKAVLLASGAVAESyPKGIPAGSYvDQSVLTIIQSARET 757
                 79*********9752678874333146677777777665 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00091
    RICTOR_V  21 elldeydivedivelaeespvlslRGtafyvLglisst 58 
                 ++++  +++e+++ + ++ ++l +RG a y +gl+++ 
  CCD22312.1 901 PFIQ--EMLESLIIILTSDKSLEVRGNAAYGVGLLCEY 936
                 2333..699*************************9975 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.4   2.5e-05     0.045       3     115 ..     100     220 ..      98     276 .. 0.64
   2 ?   -2.2   0.0       2.1   3.8e+03      76     118 ..     395     432 ..     393     458 .. 0.61
   3 ?   -4.0   0.0       7.6   1.4e+04      81     107 ..     484     506 ..     477     513 .. 0.59
   4 ?   -2.5   0.0       2.6   4.7e+03     117     140 ..     938     960 ..     896     971 .. 0.61
   5 ?    3.0   0.2     0.054        98       8      98 ..    1003    1099 ..     998    1113 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.5e-05
                 HHHHHHHHHHHHHHHHHT.TTTSTTHHHHHHHHHCT..HHHHHHHHHHHHHHHHHHHTSHTTTSCHHHHHHHHHHHHHH........HHHHHHHHHHHH CS
        Xpo1   3 flrnklaealaelflqey.pnnWpsffddllsllss.spsglelllriLkvlpeEiadfsrskleqerrndlkdllrsn........vqkilelllqil 91 
                 ++r   a+++a++ + e   n+Wp+++++l+++ s+ ++++ +  + iL++l eE    s ++   +  n + +++++           + l+ ++ ++
  CCD22312.1 100 IIRHANAHVIAAISIEELeANKWPDLIPNLIQAASNeDAATRQTAIFILLSLLEEFLPXSLTRYIDDFLNLFSQTINDTasletrslSAQALNHVSALI 198
                 68889999********99899**********99999567788888999999999988744444444444444444444422222223334444444444 PP

                 HHHHHCCHHHHHHHHHHHHHHHHT CS
        Xpo1  92 eqsqskkqsselveavLkclsswv 115
                 e++++ +  ++ + + +  + s+v
  CCD22312.1 199 EEQDEIN--PQQAAKFISLIPSFV 220
                 4444433..444444444444444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTTS CS
        Xpo1  76 lrsnvqkilelllqileqsqskkqsselveavLkclsswvswi 118
                 + s++ ki+   +  l+ s+     + +  a+Lkc+s+     
  CCD22312.1 395 ILSQFDKIIPAAIAGLKDSE-----PVVKLAALKCVSQLTTDL 432
                 66777777777777777766.....788888899988876643 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 7.6
                 HHHHHHHHHHHHHHHHCCHHHHHHHHH CS
        Xpo1  81 qkilelllqileqsqskkqsselveav 107
                 + +++ l+++le++qs+k    l  a+
  CCD22312.1 484 EPLMNKLFYMLESNQSSK----LRCAI 506
                 556677778888877754....33333 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2.6
                 TS-HHHHHTSCHHHHHHHHCCSCC CS
        Xpo1 117 widiglivnnpllnllfqlLsdpe 140
                 ++d++ ++++ +l++l++lLs  +
  CCD22312.1 938 QFDVTSVYEP-VLKALYELLSTAD 960
                 4566666654.6777777775544 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.054
                  HHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.....HHHHHHHHHHHH.HHHHHHHTSHTTTSCHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHCC CS
        Xpo1    8 laealaelflqeypnnWpsffddllsllsss....psglelllriLk.vlpeEiadfsrskleqerrndlkdllrsn.vqkilelllqileqsqskk 98  
                  l  +la+l l+   ++++ +f+ +++l +++    +++++ + +iL+ v+++E   ++ +++++  r++  d l++  ++++ + ++++l++ ++++
  CCD22312.1 1003 LPALLAHLPLKTGFEEYNPIFELIMKLYQQNnsviANATPKVVEILSaVFAKEQERIKLEQESTLGREENMDRLKQFqTEEMKQKVIELLKYLNTTY 1099
                  557899999999999***************9888877777888888625677777776666666665555555555446666666666666655554 PP

>> YqfQ  YqfQ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.49   8.7e+02      19      72 ..     492     542 ..     482     548 .. 0.69
   2 ?    7.8   0.1     0.002       3.5      53      90 ..     750     789 ..     730     793 .. 0.78
   3 ?    0.5   0.3      0.33   5.9e+02      96     147 ..    1026    1075 ..    1017    1093 .. 0.58

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.49
        YqfQ  19 qsvggeesaagrggltstaaaAsggagaansnGalqgianpaslssmlnNvqkv 72 
                  ++  ++s++ r ++ s+ ++A  +ag+a+   + +++     l ++++N   +
  CCD22312.1 492 YMLESNQSSKLRCAIVSAIGSAAFAAGSAFIPYFKTSVQ---YLEQFIQNCSNI 542
                 5778899999999**************999653332222...344555555544 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.002
        YqfQ  53 lqgianpaslssmlnNvq..kvlkvaqqvgPlvqQYGPlv 90 
                 + + a+ ++l+++++  +   v+ v + ++ +++Q+GP++
  CCD22312.1 750 IIQSARETALTNIVDEFEtaMVITVMEDFANMIKQFGPII 789
                 44456777899999876622699***************98 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.33
        YqfQ   96 ivkilrslkssedeeteevteseevevseteeseknkkkkpkakkkkkkkkk 147 
                  i+k++++++s   + t +v e      +  +e+e  k ++  +  ++++ ++
  CCD22312.1 1026 IMKLYQQNNSVIANATPKVVEILSAVFA--KEQERIKLEQESTLGREENMDR 1075
                  89**************999998855555..3333333333333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.46
# Mc/sec: 7225.85
//
Query:       CCD22313.1  [L=704]
Description: hypothetical protein NDAI_0A01550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0029   17.5   0.1      0.011   15.6   0.0    2.1  2  LisH      LisH


Domain annotation for each model (and alignments):
>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.3e-07     0.011       3      27 .]      50      74 ..      48      74 .. 0.92
   2 ?   -1.8   0.0      0.19   3.5e+03      15      27 .]     627     639 ..     626     639 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.3e-07
                HHHHHHHHHHHCT-HHHHHHHHHHT CS
        LisH  3 LNrLIydYLvkeGyeetAeaFekEa 27
                L+  Iy++L+ + ++ tAeaF k+a
  CCD22313.1 50 LDESIYNFLIDSSLTGTAEAFVKDA 74
                7888*****************9986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.19
                 T-HHHHHHHHHHT CS
        LisH  15 GyeetAeaFekEa 27 
                 +y++++  Fek+a
  CCD22313.1 627 NYKDSFDDFEKDA 639
                 7********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1543  (0.0860617); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4732.24
//
Query:       CCD22314.1  [L=363]
Description: hypothetical protein NDAI_0A01560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-18   67.0   6.7      5e-06   27.1   0.4    4.8  4  WD40         WD domain, G-beta repeat
    4.1e-07   30.2   0.0       0.19   12.0   0.0    4.1  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0046   15.7   0.1       0.88    8.1   0.0    2.1  2  Nup160       Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.018   14.0   0.0       0.52    9.2   0.0    2.4  2  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.4   1.1e-09     5e-06      12      38 .]      36      63 ..      28      63 .. 0.87
   2 !   14.0   0.0   1.6e-05     0.073      10      38 .]      77     106 ..      70     106 .. 0.88
   3 !   14.0   0.1   1.6e-05     0.072       9      38 .]     117     151 ..     110     151 .. 0.61
   4 !   12.1   0.0   6.2e-05      0.28      13      38 .]     270     295 ..     245     295 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.1e-09
                SEEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40 12 svtslafspdgawlasG.sdDgtvriWd 38
                s++++afsp +++l+s+ s+Dg+vriWd
  CCD22314.1 36 SISDIAFSPQQDFLFSSsSWDGKVRIWD 63
                599**********986638********9 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.6e-05
                 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtvriWd 38 
                 H ++v   ++s dg+ +asG+ D+ v+++d
  CCD22314.1  77 HmGPVLTTRWSNDGTKVASGGCDNIVKLFD 106
                 878888889***********88******98 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 1.6e-05
                 SS.SSEEEEEEETTSSE....EEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgaw....lasGsdDgtvriWd 38 
                 +H  +v  l+f   g+     l++Gs+D++++ Wd
  CCD22314.1 117 AHdAPVKVLRFVNCGPTntecLVTGSWDKSIKYWD 151
                 66555544443333333444499***********9 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 6.2e-05
                 EEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  13 vtslafspdgaw.lasGsdDgtvriWd 38 
                  +s+af+p     +++G+ Dg+ ++Wd
  CCD22314.1 270 LNSIAFHPVYGTfVTAGG-DGSFHFWD 295
                 578885555555156778.*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00094       4.2      38      71 ..      34      68 ..      25      78 .. 0.83
   2 !   12.0   0.0   4.3e-05      0.19      36      72 ..      76     112 ..      68     130 .. 0.83
   3 !    5.3   0.0    0.0055        25      49      78 ..     173     202 ..     165     216 .. 0.83
   4 ?   -1.6   0.0      0.76   3.4e+03      52      85 ..     281     313 ..     264     329 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00094
  ANAPC4_WD40 38 dsevrsLaWkpdgklLavays.dgevrlldaesgk 71
                 + +++++a++p+  +L  + s dg+vr+ d+++g 
   CCD22314.1 34 EDSISDIAFSPQQDFLFSSSSwDGKVRIWDVQNGI 68
                 56899*********99887665**********995 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.3e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  ++ + v   +W++dg+  a +  d+ v+l+d+ sg+ 
   CCD22314.1  76 EHMGPVLTTRWSNDGTKVASGGCDNIVKLFDVASGQN 112
                  5667788899************************985 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0055
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhslsv 78 
                  + +lL+v++++ ++ +++ ++ +++ +   
   CCD22314.1 173 KQQLLVVGTAERHIAIINLSNPTTIFKTIL 202
                  679*****************9999987655 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.76
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvksekavt 85 
                   ++ a  dg+ ++ d ++ + ++ ++  + + + 
   CCD22314.1 281 TFVTAGGDGSFHFWDKNHRHRLRGFPSLQAS-IP 313
                  5555555666666555555555555444442.33 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0002      0.88     221     251 ..      38      68 ..       3      88 .. 0.72
   2 !    5.6   0.0    0.0011         5     229     287 ..     134     193 ..     103     228 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0002
                 EET.........TTTEEEEEET.T-EEEEEETTTTE CS
      Nup160 221 vavavvei....gqtylfalsr.dgkLrvWnlltgk 251
                        i    +q++lf+ s+ dgk+r+W++++g 
  CCD22314.1  38 SD-----IafspQQDFLFSSSSwDGKVRIWDVQNGI 68 
                 22.....234459*****87644**********985 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0011
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE... CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatidllrdeeaqdessskstldpaesslirvs.dg 287
                 +   l++ s d+ ++ W+l+ ++++ t  ++  ++a d++++ + +++ae  + ++  ++
  CCD22314.1 134 NTECLVTGSWDKSIKYWDLRQAQPITTLMMPDRVYAMDSKQQLLVVGTAERHIAIINlSN 193
                 6778899999*****************888833566555555556666555554444444 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0    0.0094        42     179     217 ..      26      65 ..       6      73 .. 0.70
   2 ?    9.2   0.0   0.00012      0.52     178     222 ..      69     113 ..      57     119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.0094
    Ge1_WD40 179 egllkieehsliveaafspdGtal.atasedGevkffqvy 217
                 + +++   +  i++ afsp    l + +s dG+v+ + v 
  CCD22314.1  26 DIVVNNPAEDSISDIAFSPQQDFLfSSSSWDGKVRIWDVQ 65 
                 334444445589*******98877256778*******985 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00012
    Ge1_WD40 178 eegllkieehsliveaafspdGtalatasedGevkffqvyledee 222
                  +g  + e+   + ++ +s dGt +a    d +vk+f v   +++
  CCD22314.1  69 AQGRSQYEHMGPVLTTRWSNDGTKVASGGCDNIVKLFDVASGQNQ 113
                 45566666667899999*********************9765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2578.07
//
Query:       CCD22315.1  [L=296]
Description: hypothetical protein NDAI_0A01570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-46  159.4  16.1    1.3e-46  159.4  16.1    1.9  2  MAM1      Monopolin complex protein MAM1


Domain annotation for each model (and alignments):
>> MAM1  Monopolin complex protein MAM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4  16.1   7.2e-51   1.3e-46      37     266 ..      11     244 ..       1     245 [. 0.79
   2 ?    1.0   0.4     0.014   2.6e+02       8      34 ..     256     282 ..     250     290 .. 0.76

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 7.2e-51
                 XXXXXXXXXXX.XXX....XXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXX---HHHHHHHHHHHHHHHHH----S-TTTS CS
        MAM1  37 ksievseleqe.klnvvdlnaesslssvvekhkeeklqnkqqvpniaieentstkektkn..ldeekgevLtkskLkeLQekilelEleaiqckhalcd 132
                   + ++e + + k++ + l+++ + +s++++  e+  ++  ++pn +  e+++++e +++  l++ ++  L k++Lk LQ++i++lE +++     lc+
  CCD22315.1  11 HVLTTKESNIPtKKRKISLKNSLNKTSIRKESTEK--KEALNKPNDKEIEQKNITEDEQTidLKNTSHYLLNKMNLKLLQKEIFKLETRPMPYPDNLCS 107
                 33333333322122334467777777777433333..23333344444444555555555468889999****************************** PP

                 HHHHHH-SSHHHHHTTGGGSBSSSSS-HHHHTT----HHHH-TT-----CCSS---TTS----GGGTB-...--X...XXXXXXXXXXXXXXXXXXXXX CS
        MAM1 133 aenrkdldksRtwfLFelEmtedaseNLRnscYakrvYkaldesWklsnaLlkkvekgsedfpleqLli...Pnk...kaqkeekeleevtveiesiie 225
                  en kdl+ sR+wfLFelEm+ ++++NLRns Y+ ++Y+++d +W+  n L + + +g+e fpl+q++i   P++   +  ++  ++ ++ v+iesi +
  CCD22315.1 108 MENMKDLKISRLWFLFELEMILEQKINLRNSWYNSEIYQKIDDDWPSTNCLDEIPSEGYETFPLNQVYIrhiPEIqenQDTEKCAQIGNIDVDIESILD 206
                 *********************************************************************9999987433334446899**********9 PP

                 XXXXX.XXSSXXXSGGGHHHHSXGGGXXXXHHHHHHHTTXX CS
        MAM1 226 tektkdkkklPesvLalRnkkevFdeisidakeilkdlsss 266
                    ++ ++k+P+s+L+lRn+k vF+++++dak+il+d s+s
  CCD22315.1 207 Y--VP-SRKIPSSKLSLRNRKDVFENLNLDAKKILEDSSAS 244
                 9..55.9******************************6655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.014
                 XXXXXXXXXXX........XXXXXXXX CS
        MAM1   8 kdvnvvknshrnsakekrevkkrrrls 34 
                 k +n+ +n + n  k++ +++ +++l+
  CCD22315.1 256 KKANIETNENTNTGKQPTKEQAKKKLC 282
                 567888888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1488  (0.082994); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2100.18
//
Query:       CCD22316.1  [L=120]
Description: hypothetical protein NDAI_0A01580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-48  163.2   0.1    1.8e-48  163.0   0.1    1.0  1  Atg8      Autophagy protein Atg8 ubiquitin like
    4.2e-07   30.3   0.0    5.2e-07   30.0   0.0    1.1  1  APG12     Ubiquitin-like autophagy protein Apg12


Domain annotation for each model (and alignments):
>> Atg8  Autophagy protein Atg8 ubiquitin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.0   0.1     2e-52   1.8e-48       1     104 []      13     116 ..      13     116 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.0 bits;  conditional E-value: 2e-52
                 HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---S-SEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEETTE-SSTTSBHHHHHHHH--TTSSEEEEEES CS
        Atg8   1 krkkesekirekypdriPvivekaekeklpeldkkkylvPedltvgqlvliirkrlqlepekalfllvnetlpstsatmsalyeeekdedgflyvvyss 99 
                 krk+es+ki +k+ driPvi+eka+++++pe+dk+kylvP+dlt+gq+v+++rkr+ l +eka+f++vn+tlp+tsa +s++y+e+kd+dgfly++ys+
  CCD22316.1  13 KRKAESDKICQKFEDRIPVICEKADNSDIPEIDKRKYLVPSDLTIGQFVYVVRKRIILPAEKAIFIFVNDTLPPTSALLSTVYQEHKDKDGFLYITYSG 111
                 79************************************************************************************************* PP

                 SSTB- CS
        Atg8 100 entfG 104
                 entfG
  CCD22316.1 112 ENTFG 116
                 ****9 PP

>> APG12  Ubiquitin-like autophagy protein Apg12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   5.8e-11   5.2e-07      10      87 .]      39     116 ..      31     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 5.8e-11
                 TTS---S--EEEEETTSBHHHHHHHHHHHCT-.SSSS-EEEETTTB---TTSBHHHHHHHH-.BTTEEEEEEESSS--- CS
       APG12  10 gdvpilkkkklkvnasdtvakvilflkkeLklqaseslflYvnnsFaPsPdeeveeLyecfg.tdkklvlnYcisvAfG 87 
                 +d+p + k+k+ v +  t+ +++  ++k++ l+a++ +f++vn++  P+    + ++y+ ++  d+ l ++Y+ +  fG
  CCD22316.1  39 SDIPEIDKRKYLVPSDLTIGQFVYVVRKRIILPAEKAIFIFVNDTLPPT-SALLSTVYQEHKdKDGFLYITYSGENTFG 116
                 689******************************************9887.5789*******96677777****999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 865.25
//
Query:       CCD22317.1  [L=230]
Description: hypothetical protein NDAI_0A01590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.055   14.0   8.6      0.078   13.5   8.6    1.1  1  AAA_23     AAA domain
      0.084   12.9   0.3        9.3    6.3   0.1    2.4  2  Kelch_4    Galactose oxidase, central domain
       0.12   12.4   2.5        0.3   11.1   2.5    1.7  1  Dynamin_N  Dynamin family


Domain annotation for each model (and alignments):
>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   8.6   1.3e-05     0.078      49     190 ..      63     225 ..      48     228 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
      AAA_23  49 rlsrksgrgfeksdveiesegkvkayveltfenkdgry..trsiererelskkkgkttkka.klelleideleqfisellgskkiilnlilflgqerfe 144
                  ++ +++++ +k+d+  ++++ ++++v+  + + ++ry  + +i+ + + s +k++  kk  k +ll+++++++++ + +    + ++++++ g+   e
  CCD22317.1  63 HTPERHSNNTNKRDCLTSDSKGKSSIVDDILDRRRNRYtdDNIITSSPTSSTSKSRADKKHeKMNLLRDNQRQEKLVS-IRGGLDKMEQFVMEGERLRE 160
                 455556889999999988887777779999999999999544444444444444444444334445555555555553.44455678888888888766 PP

      AAA_23 145 efelkdkke...rleelekeleeledekkllekl................eqekekekeleelee 190
                  ++lk++ e      ++++e+e++++ +++ e++                e ++ +ekele+l +
  CCD22317.1 161 IESLKQEAEihaIPTSYIDEFEQESASEDEEENVsddsdeleddelirmlELQEGYEKELEKLMS 225
                 66665544466533334444444444444433333333333333665553444457777777755 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0063        38      27      43 ..       2      18 ..       1      23 [. 0.88
   2 ?    6.3   0.1    0.0016       9.3      37      49 .]      36      48 ..      27      48 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0063
     Kelch_4 27 llndlylldlstntWrr 43
                +++d+ ++ +++n+W++
  CCD22317.1  2 FSDDITIIAIENNKWSQ 18
                579999*********76 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0016
     Kelch_4 37 stntWrrlgslPs 49
                +tn+W++++++Ps
  CCD22317.1 36 QTNEWQPSSDPPS 48
                79*********97 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.5     5e-05       0.3       8      73 ..      82     146 ..      80     225 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5e-05
                 TTTHHHHHHHHHTS--S-.--SSS---S-EEEEECCT---CCS...SSEEEET-EB--CHHHHHHHH CS
   Dynamin_N   8 SsGKSSvlnaLlgedilp.rgpnptTrrplelqlgeeeeaseravkeelkekekkledfsevreeie 73 
                 S+GKSS+++ +l ++ +  ++ n++T  p+  + ++  + +  ++k +l  +++++e++  +r  ++
  CCD22317.1  82 SKGKSSIVDDILDRRRNRyTDDNIITSSPTSSTSKSRADKK--HEKMNLLRDNQRQEKLVSIRGGLD 146
                 99**********999877699*********98886555522..233333333444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1167  (0.0650901); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1790.73
//
Query:       CCD22318.1  [L=645]
Description: hypothetical protein NDAI_0A01600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   7.4e-260  863.3   8.8   8.4e-260  863.1   8.8    1.0  1  HSP70           Hsp70 protein
    3.7e-17   62.1   0.1      5e-16   58.4   0.0    2.0  2  MreB_Mbl        MreB/Mbl protein
     0.0013   18.5   0.0     0.0027   17.5   0.0    1.6  1  FGGY_C          FGGY family of carbohydrate kinases, C-termin
  ------ inclusion threshold ------
      0.076   12.0   0.7       0.37    9.7   0.3    2.0  2  DDR             Diol dehydratase reactivase ATPase-like domai
       0.65    9.2   5.3        0.1   11.9   0.3    2.2  3  Hydantoinase_A  Hydantoinase/oxoprolinase
          1    7.9   7.5       0.69    8.5   0.0    2.1  2  SWI-SNF_Ssr4    Fungal domain of unknown function (DUF1750)
        1.6    8.1   8.0        1.2    8.5   4.7    1.9  2  Golgin_A5       Golgin subfamily A member 5


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  863.1   8.8  3.3e-263  8.4e-260       1     598 [.       4     609 ..       4     610 .. 0.97

  Alignments for each domain:
  == domain 1  score: 863.1 bits;  conditional E-value: 3.3e-263
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 +iGiDLGtt+s+va + ++++e+ian++gnrttPs+vaFt++erl+G+aAk+qa+ np+ntvf++KrliGrkf+dpev+ + +++p+k+v+k +gk+ +
  CCD22318.1   4 AIGIDLGTTYSCVAHFSNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQAAINPHNTVFDAKRLIGRKFDDPEVTLDAEHFPFKIVNK-EGKPAI 101
                 59*****************************************************************************************9.9***** PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS.SCEEEEEEEEXS CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd.kernvlvyDlGg 195
                 +ve++ge  +ftpe+is+mvL+k+ketae ylg++++dav+tvPaYfnd+qRqatkdAg+iAG+nvlRi+NepTAaa+aYGldkk   e+nvl++DlGg
  CCD22318.1 102 QVEFKGEtkTFTPEEISSMVLTKMKETAEGYLGETIKDAVVTVPAYFNDSQRQATKDAGTIAGMNVLRIINEPTAAAIAYGLDKKGeAEHNVLIFDLGG 200
                 ******999**************************************************************************998689********** PP

                 SXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEE CS
       HSP70 196 gtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlsekls 294
                 gtfdvS+l++++GvfevkaTagDthlGGedfD++lv+hl++efk+k++ d++++++ l+rl++aae+aK++LSs  ++++++ei+++ e g d+ ++++
  CCD22318.1 201 GTFDVSLLSIDDGVFEVKATAGDTHLGGEDFDNRLVDHLANEFKRKNKKDITTNQRSLRRLRTAAERAKRALSS--SSQTSVEIDSLYE-GIDFYTSIT 296
                 **************************************************************************..6777788999**9.********* PP

                 HHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTC..GCSHCCEEEEBE CS
       HSP70 295 RakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpDeavaiGAAvqagvlsge..eevkdllllDvt 390
                 Ra+feel++dl++ tlepvek+l+d+kl+k++++e+vlvGGstRiPkvq+lv+++f+ kep++++npDeava+GAAvqa++l+g+  ++++dllllDv 
  CCD22318.1 297 RARFEELCADLFRSTLEPVEKVLRDSKLDKSQVNEIVLVGGSTRIPKVQKLVSDFFNgKEPNRSINPDEAVAYGAAVQAAILTGDqsSKTQDLLLLDVA 395
                 ********************************************************99**************************9777999******** PP

                 SS-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTC CS
       HSP70 391 pLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketg 489
                 pLs+giet+gg+mtkli+rn tiptkks++fst+adnq+ v i+v++ger+ +kdn+llg+fel gippaprGvpqieVtfdidanGil+vsa +k+tg
  CCD22318.1 396 PLSMGIETAGGIMTKLIPRNSTIPTKKSETFSTYADNQPGVLIQVFEGERTRTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTG 494
                 *************************************************************************************************** PP

                 CEEEEEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..GGGSTHHHH....HHHHHHHHHHHCHTTSSCHHHHHH CS
       HSP70 490 keeeitieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee..aekvseaek....ekvesaieeLkeeleeeekeeiea 581
                 k+++iti++++g ls+++ie+mv++ae++++ed+k++e++ akn++e+++ sl+++++e+  +ekv e+++    ++ +++i++L+++ +++++ee+++
  CCD22318.1 495 KSNKITITNDKGrLSKDDIERMVSEAEKFKAEDEKEAERVTAKNQLESYAFSLKNSVSEAsfKEKVGEDDAkkleTAAQETIDWLDAS-QAASTEEYKD 592
                 ************9**********************************************9999***9999845555556677888877.6888****** PP

                 HHHHHHHHHHHHHHHHH CS
       HSP70 582 kteelkkvvekiaekly 598
                 +++el++++++i++k y
  CCD22318.1 593 RQKELEATANPIMTKFY 609
                 ************99876 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.043   1.1e+02       2      21 ..       3      24 ..       2      64 .. 0.65
   2 !   58.4   0.0   1.9e-19     5e-16      92     316 ..     136     372 ..     114     380 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.043
                SEEEEEE-SSEEEE..EETTTE CS
    MreB_Mbl  2 kdlgiDLGtantlv..yvkgkg 21
                k +giDLGt+   v  + +++ 
  CCD22318.1  3 KAIGIDLGTTYSCVahFSNDRV 24
                579*******998854555554 PP

  == domain 2  score: 58.4 bits;  conditional E-value: 1.9e-19
                 S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TT..SSS-EEEEEE-SS-EEEEEEETTEEE.....EEEEES-SHHHHHHH CS
    MreB_Mbl  92 skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpve..epsgnmvvdiGggttevavislggiv.....tsksvrvaGdeldea 183
                 + +  v++vP   ++ +r+A k+a + aG +   +i+ep aAAi  gl+ +  + +  ++ d+Gggt +v+++s+ + v     t+   +++G+++d+ 
  CCD22318.1 136 TIKDAVVTVPAYFNDSQRQATKDAGTIAGMNVLRIINEPTAAAIAYGLDKKgeAEHNVLIFDLGGGTFDVSLLSIDDGVfevkaTAGDTHLGGEDFDNR 234
                 456789**************************************99999753134456899**************9877222222345789******** PP

                 HHHHHHHHHS......EE--HHHHHHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH CS
    MreB_Mbl 184 iikyirkkyn......lliGertaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdr 275
                 +++++ ++++      ++  +r+ ++++++   a+   +++ +++++   l +g+   ++++ ++ +e  ++ +++ +e v++vL++ + + +     +
  CCD22318.1 235 LVDHLANEFKrknkkdITTNQRSLRRLRTAAERAKRALSSSsQTSVEIDSLYEGIDFYTSITRARFEELCADLFRSTLEPVEKVLRDSKLDKSQ---VN 330
                 ***9977764222223677788888888888888776665569999999*************************************99876543...46 PP

                 -EEEESGGGGSBTHHHHHHHHHSS-.EEE-SSTTTHHHHHHH CS
    MreB_Mbl 276 givltGGgallkgldkllseetglp.vkvaedpltcvakGtg 316
                  ivl+GG++ +  ++kl+s+ ++ +  + + +p ++va G++
  CCD22318.1 331 EIVLVGGSTRIPKVQKLVSDFFNGKePNRSINPDEAVAYGAA 372
                 79*****************99875515677888888888876 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.1e-06    0.0027     123     196 ..     295     377 ..     251     379 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.1e-06
      FGGY_C 123 iarAaleavalqlrailealekd..................sgkpldrlavdGGgskndllmqllAdilg..vpVerpktaeatalGaAilAav 196
                 i+rA +e ++            d                  +++++++++++GG ++ + +++l  d ++   p +   ++ea+a GaA+ Aa+
  CCD22318.1 295 ITRARFEELCA-----------DlfrstlepvekvlrdsklDKSQVNEIVLVGGSTRIPKVQKLVSDFFNgkEPNRSINPDEAVAYGAAVQAAI 377
                 33333333333...........34444444444446667778999**************************999777788************96 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.3   0.00014      0.37     119     166 ..     176     223 ..     115     226 .. 0.64
   2 ?   -0.3   0.0      0.16   4.2e+02     273     296 ..     327     350 ..     311     355 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00014
         DDR 119 emAilGalttPG.tekplailDlGaGstDaalieeegevkavhlAGAGe 166
                  +Ai   l   G +e+++ i DlG+G+ D +l++ ++ v  v  A AG+
  CCD22318.1 176 AAAIAYGLDKKGeAEHNVLIFDLGGGTFDVSLLSIDDGVFEVK-ATAGD 223
                 3444444555552578899***************999998864.77776 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.16
         DDR 273 rdidfvvlvGgsalDfEipelvtd 296
                  +++ +vlvGgs+    +++lv+d
  CCD22318.1 327 SQVNEIVLVGGSTRIPKVQKLVSD 350
                 46889*******999999999887 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.3   3.3e+03      80     104 ..       3      27 ..       2      36 .. 0.84
   2 ?   11.9   0.3   3.9e-05       0.1      24     103 ..     135     217 ..     116     229 .. 0.69
   3 ?   -3.2   0.1       1.5   3.8e+03     193     252 ..     550     615 ..     535     617 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.3
  Hydantoinase_A  80 kvItfDmGGTstDvslikdgevevs 104
                     k+I++D+G T   v+++++ +ve+ 
      CCD22318.1   3 KAIGIDLGTTYSCVAHFSNDRVEII 27 
                     689*******999999999998875 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.9e-05
  Hydantoinase_A  24 kslekrgakarlmvmqsdGglv.sadearkkpvetilSGPaaGvvgaaatsklagekkvItfDmGGTstDvsl..ikdgevev 103
                     ++++++ ++ + ++ +s+   + +a ++ +  v  i+  P a ++++    k + e++v+ fD+GG ++Dvsl  i+dg +ev
      CCD22318.1 135 ETIKDAVVTVPAYFNDSQRQATkDAGTIAGMNVLRIINEPTAAAIAYGLDKKGEAEHNVLIFDLGGGTFDVSLlsIDDGVFEV 217
                     555555555666666665543325666777777788888999998888878999999**************972245666655 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.5
  Hydantoinase_A 193 elarraf.eelakelnlkveevAegilsvavenmanavrkl.....svergldpkeltlvvfGGaG 252
                     +  ++ f e++++   +k+e++A++ ++ +    a   +++     + e  ++p  + +++ GGaG
      CCD22318.1 550 SVSEASFkEKVGEDDAKKLETAAQETIDWLDASQAASTEEYkdrqkELEATANPIMTKFYGAGGAG 615
                     445555666666666677777777777777766666666653332233334444455555566665 PP

>> SWI-SNF_Ssr4  Fungal domain of unknown function (DUF1750)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00027      0.69     306     386 ..     194     275 ..     189     286 .. 0.83
   2 ?    0.0   4.7     0.096   2.5e+02     359     443 ..     510     598 ..     481     607 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00027
  SWI-SNF_Ssr4 306 vpvdLgLGl.kGeLasLTeGifeaqleeakketpkkkyvgkldpekaeeFrkrvaekveetkaeieklkaeHakrlaklkks 386
                   ++ dLg G     L s+ +G+fe +++  +++   +   ++l   +a+eF+++ ++ + +++  + +l+   +++   l++s
    CCD22318.1 194 LIFDLGGGTfDVSLLSIDDGVFEVKATAGDTHLGGEDFDNRLVDHLANEFKRKNKKDITTNQRSLRRLRTAAERAKRALSSS 275
                   56677777425679999******999988888889999******************************98877766666555 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.096
  SWI-SNF_Ssr4 359 aekveetkaeieklkaeHakrlaklkkssllkqaEkeLreavad...psetgs.eiwrlegrldeeeeeeseasveakkkvddivaeve 443
                   ++ +e + +e ek+kae +k+ +++++++ l++   +L+++v +   ++++g+ ++ +le  ++e+ +   +++  ++++  d  +e+e
    CCD22318.1 510 KDDIERMVSEAEKFKAEDEKEAERVTAKNQLESYAFSLKNSVSEasfKEKVGEdDAKKLETAAQETIDWLDASQAASTEEYKDRQKELE 598
                   568999999*****************999999999999999888555556665246677777766555444444444555555555555 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.16     4e+02     105     149 ..     242     283 ..     217     305 .. 0.61
   2 ?    8.5   4.7   0.00047       1.2      46     158 ..     496     607 ..     484     611 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.16
   Golgin_A5 105 erkakeeveaelerlkeelryleeelvrskatlqsrikdrekeie 149
                 e k  ++ ++++   ++ lr+l+    r+k  l s   +   ei+
  CCD22318.1 242 EFK--RKNKKDITTNQRSLRRLRTAAERAKRALSSSS-QTSVEID 283
                 322..23355555555555555555555555554443.2334444 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00047
   Golgin_A5  46 saeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdr 144
                 s ++  ++++  l +++++++ ++ e+ ++e ++ ea++ +  ++l+    +l++ ++e + +++  e++ ++l+   + + + l  s+a + ++ kdr
  CCD22318.1 496 SNKITITNDKGRLSKDDIERMVSEAEKFKAE-DEKEAERVTAKNQLESYAFSLKNSVSEASFKEKVGEDDAKKLETAAQETIDWLDASQAASTEEYKDR 593
                 5555566667778889999999999999999.88888888888888888888999998888888888999999999999999999************** PP

   Golgin_A5 145 ekeieklrnqlttk 158
                 +ke+e   n ++tk
  CCD22318.1 594 QKELEATANPIMTK 607
                 ************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1307  (0.0728987); expected 358.6 (0.02)
Passed bias filter:                      684  (0.0381505); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 4751.06
//
Query:       CCD22319.1  [L=365]
Description: hypothetical protein NDAI_0A01610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-33  115.2   1.2    5.5e-33  114.8   1.2    1.0  1  AAR2      AAR2 protein
  ------ inclusion threshold ------
       0.12   11.1   1.0       0.34    9.6   0.6    1.8  2  MAP70     Microtubule-associated protein 70


Domain annotation for each model (and alignments):
>> AAR2  AAR2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8   1.2   6.1e-37   5.5e-33       5     322 ..       3     336 ..       2     352 .. 0.80

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 6.1e-37
        AAR2   5 lllldlpegtefGiDlksftvgpk..FkGikmiPpG.vHfvyysaasstselslrsgfffy....fkkgevivkkwdkeeEdLveelseeeaerykanl 96 
                 +++ ++p + ++G+D+ sf+++++  FkGi +iP G +H ++++      e  +r+g +++     + +  +  ++d++ E L   + ee++ +y + +
  CCD22319.1   3 IIFVSIPVDVTIGLDHYSFEIKKDtpFKGIVDIPRGcLHTLHFQQ-----EDGMRYGYWLNnndtNGMNHRYYVRYDADDE-LYRIHVEEDEIKYDNVV 95 
                 578899**************888889**********77******9.....789********88864445577788999988.66668888889999999 PP

        AAR2  97 ksiefdkkLapYpsdasek.WksltshIteellerilpesgkisstaelasseseaesekkkawskssseeskgssakrdeeelpslkskegtelrFte 194
                 + ++ ++   +Yp+   e+ W++lt++ + + +e i  + ++  ++ + ++  +++++ +k++      ++   ++ +rd  +l    ++++++l++t+
  CCD22319.1  96 RDYKNRQLVQNYPKIVEEDvWNRLTEYCSWDQIEVIFKNGRENGDAISAYKYVDSSMT-SKEE------STLLRETLQRDVGDLTRACNDKEQHLHYTD 187
                 9999999999***9987768*****************977777777788777777777.2222......23445667788888888888889999**** PP

        AAR2 195 iplkrtwpegatgrelTkaalDkSwaLedllrksssgd..eaelLgElqfaFvlflllqnyssfeqWkrllsLlltceeaikerpdlfvkflrvLraqL 291
                 i+   + +e   ++   +   DkS++L++++ k++  +   + lLgElq++F+++++  ny s  qW+++++L+++++++    ++++  + ++L +qL
  CCD22319.1 188 IK--FKSREAIRPHHEWEDFNDKSYYLNEVILKRRPFNssFERLLGELQITFLNLIIFGNYGSSLQWHSIIELIMMSSQV---SEHHIKRLDELLSLQL 281
                 *5..5888899********************8887655559*************************************99...55666667789***** PP

        AAR2 292 kelpe..........flsdivs......kdnfLkkllkkfrenlee............e 322
                 + lpe          ++    +       +n L ++ k+++e++ +            +
  CCD22319.1 282 ETLPEgyidifinmgMW----NrcltssFHNELLPKTKQLFEKMIKeeecnsdieyfdD 336
                 *****988765544433....13444445566666667777666664666666666553 PP

>> MAP70  Microtubule-associated protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6   3.7e-05      0.34     446     491 ..     144     187 ..      82     194 .. 0.68
   2 ?   -1.2   0.0     0.069   6.2e+02     263     303 ..     195     235 ..     189     236 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 3.7e-05
       MAP70 446 eekesekakadsedlvsgllydmlqkevitlrkashekdqslkdkd 491
                 + k ++++ + +e   s+ll ++lq++v  l +a+++k+q l+  d
  CCD22319.1 144 AYKYVDSSMTSKE--ESTLLRETLQRDVGDLTRACNDKEQHLHYTD 187
                 3344444444443..589***********************98776 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.069
       MAP70 263 avvvaneWkdandkvmPvkqWleerrflqgemqqlrdklai 303
                 a+    eW d ndk   +   +  rr +++   +l   l i
  CCD22319.1 195 AIRPHHEWEDFNDKSYYLNEVILKRRPFNSSFERLLGELQI 235
                 555668*********99999999999999988888777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2973.20
//
Query:       CCD22320.1  [L=201]
Description: hypothetical protein NDAI_0A01620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.6e-57  191.7   1.7    6.6e-57  191.5   1.7    1.1  1  Ribosomal_S8e  Ribosomal protein S8e


Domain annotation for each model (and alignments):
>> Ribosomal_S8e  Ribosomal protein S8e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.5   1.7   3.7e-61   6.6e-57       1     137 []       1     185 [.       1     185 [. 1.00

  Alignments for each domain:
  == domain 1  score: 191.5 bits;  conditional E-value: 3.7e-61
                    XXXBXXCCCSEESSTEEXXXSSXXXCCSBXXXXXXXEESSHEEEEEEETTCEEEEEEESESEEEEEETTTTEEEEEEEEEEECSSSTCHHHHTTC- CS
  Ribosomal_S8e   1 mgisrdskhkrkltGgkakllrkkrkielgrkekatklgaervkvvrvrgGkrkkralrlkkanvthpeekvtkklkIlgVkknpsnneyvrlgvl 96 
                    mgisrds+hkr++tG+k++++rkkrk+elgr++++tk+g +r+++vr+rgG++k+ralr++++n+++++e+++kk++I gV+++psnne+vr+++l
     CCD22320.1   1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGGKRIHTVRTRGGNKKFRALRIETGNFSWASEGIAKKTRIAGVVYHPSNNELVRTNTL 96 
                    99********************************************************************************************** PP

                    -TTEEEEEESHH................................................HHHHHHTTEEEEEEESEHHHHSSEEEEEE CS
  Ribosomal_S8e  97 tKgaiievdvse................................................LgevtqsgkvvAqvtsrPgqdGcvnavlL 137
                    tK ai+++d+++                                                +++++++g+++A+++srPgq+G++++++L
     CCD22320.1  97 TKAAIVQIDATPfrqwyeghygqtlgkkkagkgteeeivktknsekkwaaraasakiepsVEHQFSAGRLYACISSRPGQSGRCDGYIL 185
                    ****************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1475.82
//
Query:       CCD22321.1  [L=81]
Description: hypothetical protein NDAI_0A01630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-20   71.1   0.2    6.4e-20   70.6   0.2    1.2  1  zf-CSL       CSL zinc finger
    0.00048   20.2   0.1      0.001   19.1   0.1    1.5  1  Zn-ribbon_8  Zinc ribbon domain


Domain annotation for each model (and alignments):
>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.2   7.1e-24   6.4e-20       1      58 [.       5      58 ..       5      59 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 7.1e-24
                EEEEGGGSEEETTTTEEEEEETTSSEEEEEHHHHHTT....--EEEETTSSEEEEEE- CS
      zf-CSL  1 develedfefdeeeesyyypCRCgdeFelteedleegaegaevvvqCssCSLwikVkf 58
                de+e+ed++f +e e ++ypC+Cgd+Fe+ ++d+ +g    e ++ C+sCSL+i V+f
  CCD22321.1  5 DEIEIEDMTFHPELELFTYPCPCGDRFEILLADMLDG----ENIAVCPSCSLMIDVIF 58
                89***********************************....***************98 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   1.1e-07     0.001       4      32 ..      21      50 ..      20      54 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.1e-07
  Zn-ribbon_8  4 YeYrCeeCghefevlqsis.daplta.CPeC 32
                 + Y C  Cg +fe+l + + d +++a CP+C
   CCD22321.1 21 FTYPCP-CGDRFEILLADMlDGENIAvCPSC 50
                 678898.9*****6655555*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 643.03
//
Query:       CCD22322.1  [L=428]
Description: hypothetical protein NDAI_0A01640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-14   53.2   0.0    1.1e-13   52.4   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
      8e-06   25.7   0.2    1.8e-05   24.6   0.2    1.6  1  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.025   14.3   0.1      0.063   13.1   0.1    1.6  1  SplA          Transcriptional regulator protein (SplA)


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   1.8e-17   1.1e-13       8     133 .]     279     423 ..     275     423 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.8e-17
                   ETT.STTHH...HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----................S-EEE-CHHHCTTT-EEEE--GGG...-. CS
  ADH_zinc_N_2   8 dyr.tedfe...aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp...............lsaallkpakkrkgrsvkyeflfsmkas. 84 
                   +y+  +++e   +   +++++vvld +gg ++l +s +++  gG +++  g+                 ++a  +   + ++   +++f+f+++a+ 
    CCD22322.1 279 NYDpVTNAEftvKYD-QGKFNVVLDFIGGYDILGHSSDLIHSGGVYLTTVGDYvgnysedvfnswdnpSANARKMFGTMLWKY-NYIHFYFDTNAKn 373
                   666566666666565.556*********************6659998877777799999888866655333333333333332.4566777644448 PP

                   ..-HHHHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  85 .aqadileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                    ++ d l+++++l++  +++ vvd+v+++++ +eA+ y+++ ra GK++l
    CCD22322.1 374 aKKNDWLQKCGELLANDEVKCVVDKVYDWKDHKEAFSYMATQRAQGKLIL 423
                   889999******************************************97 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2     3e-09   1.8e-05       2      60 ..      77     135 ..      76     142 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3e-09
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS.--TT-EEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk.lkvGdrVv 60 
                 ++++++v+++g++  D++i +g   +    ++ +G E +G+v evg+++++ ++vGd+V+
  CCD22322.1  77 DKLVVQVNYVGLNPIDMKIRNG-YTSAIYGEVGIGREYSGTVTEVGSKIQHaYHVGDEVF 135
                 6789******************.7999999999*****************99******97 PP

>> SplA  Transcriptional regulator protein (SplA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.1e-05     0.063       3      33 ..     126     155 ..     124     161 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
        SplA   3 kelkagdeVyViyrNPHtanVanikeAeivk 33 
                 + +++gdeV+ iy  PH a V +++ A +v+
  CCD22322.1 126 HAYHVGDEVFGIYYHPHLA-VGSLQSAILVD 155
                 579**************75.89999987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3080.66
//
Query:       CCD22323.1  [L=251]
Description: hypothetical protein NDAI_0A01650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-21   75.4   0.0    4.8e-21   74.9   0.0    1.2  1  UQ_con     Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
       0.11   12.8   1.1       0.24   11.7   0.2    1.8  2  RWD        RWD domain
       0.19   11.4   0.0       0.32   10.7   0.0    1.5  1  Prok-E2_B  Prokaryotic E2 family B


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0     8e-25   4.8e-21       1     113 [.       9     120 ..       9     148 .. 0.85

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 8e-25
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGS..TTT--TTSHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLk..eekWspaltl 97 
                 rl+ke+k l +++p+ i a + +d n+ ew+ +i+gp+dtpY+gg ++ +l+fp+dYP+kpP ++++t+  +   +++ ++cl++     ++W+p +++
  CCD22323.1   9 RLTKEYKLLVESSPPFILARPNED-NILEWHYIITGPPDTPYDGGQYHGTLTFPNDYPYKPPAIRMITP--NGRFKENTRLCLSMSDyhPDTWNPGWSV 104
                 799********************7.****************************************9984..78899*******996533555******* PP

                 HHHHHHHHHHHHS--T CS
      UQ_con  98 esvllsiqsLlaepnp 113
                 +++l  ++s+++  + 
  CCD22323.1 105 STILNGLLSFMTGNEA 120
                 *********9955433 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.47   2.8e+03      60      78 ..       9      31 ..       5      48 .. 0.82
   2 ?   11.7   0.2   3.9e-05      0.24      58      79 ..      57      79 ..      46     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.47
                EE-SSTT....SS--EEEEEECC CS
                xxxxxxx....xxxxxxxxxxxx RF
         RWD 60 klpeeYP....eeaPiislsste 78
                +l++eY+    +++P i  + +e
  CCD22323.1  9 RLTKEYKllveSSPPFILARPNE 31
                78999999998888888777665 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.9e-05
                EEEE-SSTTSS--EEEEEECC.S CS
                xxxxxxxxxxxxxxxxxxxxx.x RF
         RWD 58 eiklpeeYPeeaPiislsste.n 79
                + ++p++YP+++P i++ +++  
  CCD22323.1 57 TLTFPNDYPYKPPAIRMITPNgR 79
                789*************9998853 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.3e-05      0.32      34      99 ..      50     109 ..      12     142 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 5.3e-05
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvle 99 
                 +gg++  +l +p+++p+ ppa++   p+ +      +  +  LCl      +d w+p  sv  +l+
  CCD22323.1  50 DGGQYHGTLTFPNDYPYKPPAIRMITPNGR-----FKE-NTRLCLSMSDYHPDTWNPGWSVSTILN 109
                 79999999*****************99944.....344.5799**8669999***99999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1917.70
//
Query:       CCD22324.1  [L=325]
Description: hypothetical protein NDAI_0A01660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-44  150.5   0.2    9.9e-43  144.8   0.0    2.3  2  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    3.4e-36  125.0   0.9    7.4e-30  104.3   0.4    2.3  2  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    2.9e-16   59.4   0.6    7.7e-16   58.0   0.6    1.7  1  Pribosyltran    Phosphoribosyl transferase domain
     0.0023   17.4   0.1     0.0036   16.8   0.1    1.3  1  UPRTase         Uracil phosphoribosyltransferase
  ------ inclusion threshold ------
       0.13   12.5   0.0        0.3   11.3   0.0    1.6  1  DUF2007         Putative prokaryotic signal transducing prote


Domain annotation for each model (and alignments):
>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   0.0   2.8e-46   9.9e-43       1     116 []      13     131 ..      13     131 .. 0.98
   2 ?    3.7   0.0     0.016        57      17      94 ..     192     266 ..     185     286 .. 0.69

  Alignments for each domain:
  == domain 1  score: 144.8 bits;  conditional E-value: 2.8e-46
  Pribosyltran_N   1 lkifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqsls..kpvndnlmelllmidalrrasakritaViPylgysr 93 
                     +k++ag+s++eLaeki+ rlg++l k+ v +++++E++v+i es+r++dv+iiq+    +++nd lmell++i+a+++asa+ritaViP ++y+r
      CCD22324.1  13 IKLLAGNSHPELAEKISTRLGISLSKVGVYQYSNKETSVTIGESIRDEDVYIIQTGIgaQEINDFLMELLILIHACKTASARRITAVIPNFPYAR 107
                     689****************************************************988899********************************** PP

  Pribosyltran_N  94 qdrk.ksrepisaklvaklLeaaG 116
                     qd+k ksr+pi+akl+a+lL++aG
      CCD22324.1 108 QDKKdKSRAPITAKLIANLLQTAG 131
                     ****999***************99 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.016
  Pribosyltran_N  17 akrlgvelgkakvsrfadgEik.veieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgysrq 94 
                     a++l+++ + ++ +r + +E++ + +  +v gk + ++ ++++        l+  +d+l    ak+++a++ +   s  
      CCD22324.1 192 ADKLDLNFALIHKERQKANEVSrMLLVGDVTGKSCLLVDDMADT----CGTLVKACDTLMSHGAKEVIAIVTHGIFSGD 266
                     56666666665555555555541555568999999988877654....6778889999999999999999986555444 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.4e-07   0.00049       1      40 [.     171     210 ..     171     215 .. 0.92
   2 !  104.3   0.4   2.1e-33   7.4e-30      71     183 ..     211     320 ..     206     321 .. 0.94

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.4e-07
                     TGGGEEEEESSGGGHHHHHHHHHHTT-EEEEE-------- CS
  Pribosyl_synth   1 dyrnavivakspgsakkatsyaerlrlglavihGeqkeae 40 
                     d +na++v+ + g ak+  s a++l l  a+ih e+++a+
      CCD22324.1 171 DLHNAILVSPDAGGAKRVASLADKLDLNFALIHKERQKAN 210
                     689********************************98875 PP

  == domain 2  score: 104.3 bits;  conditional E-value: 2.1e-33
                     ------EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--HHHHHT-TTEEEE--HHH CS
  Pribosyl_synth  71 ekppltvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntipheiqklrcskiktvdisll 165
                     e   + +vGdv+G+  ++vdd+ d   ++v+a ++l  +Ga  +++++thG++s da ++l++s +  +v tnt+p e+       +  +dis  
      CCD22324.1 211 EVSRMLLVGDVTGKSCLLVDDMADTCGTLVKACDTLMSHGAKEVIAIVTHGIFSGDAREKLKNSRLSRIVCTNTVPVEL---DLAIVDQMDISPT 302
                     5667899***********************************************************************9...56678899***** PP

                     HHHHHHHHHHT---TT-S CS
  Pribosyl_synth 166 laeairrihngesmsylf 183
                     laeairr+hnges+sylf
      CCD22324.1 303 LAEAIRRLHNGESVSYLF 320
                     *****************9 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.6   2.1e-19   7.7e-16      27     144 ..     171     283 ..     162     295 .. 0.86

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 2.1e-19
                   -GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEEEEEEE CS
  Pribosyltran  27 ngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDildtGgTllaalelLkekgpeevriavl 123
                   + ++ ++v ++ gG  ++  lad+L++ +a + k++  ++  + +         l +d+ gk++l+VDD+ dt gTl +a++ L ++g++ev+++v 
    CCD22324.1 171 DLHNAILVSPDAGGAKRVASLADKLDLNFALIHKERQKANEVSRML--------LVGDVTGKSCLLVDDMADTCGTLVKACDTLMSHGAKEVIAIVT 259
                   567889***************************************9........9****************************************** PP

                   E...E-HHHHHHHHHH-TTS.... CS
  Pribosyltran 124 v...dkpateeevdknakrvfsls 144
                   +      a+e+ +     r+++++
    CCD22324.1 260 HgifSGDAREKLKNSRLSRIVCTN 283
                   999855555555555556666555 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     1e-06    0.0036      95     174 ..     198     276 ..     183     312 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-06
     UPRTase  95 ghlglqreeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefp 174
                   +++++e ++++ v  +  L  +++ ++ ll+D +  T g++++a+++L ++g++e   +v   + s  + ++l ++  
  CCD22324.1 198 NFALIHKERQKANEVSRM-LLVGDVTGKSCLLVDDMADTCGTLVKACDTLMSHGAKEVIAIVTHGIFSGDAREKLKNSRL 276
                 556777777766655444.578889999**************************99887777778877777666665544 PP

>> DUF2007  Putative prokaryotic signal transducing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.3e-05       0.3      10      46 ..     117     152 ..     113     162 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.3e-05
     DUF2007  10 pveaelikslLeeagIeavvkdeftssileGalgelp 46 
                 p+ a+li +lL+ ag+ +v+  +  +s ++G+ +++p
  CCD22324.1 117 PITAKLIANLLQTAGCDHVITMDLHASQIQGF-FHIP 152
                 899**************999855559999999.3555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2606.71
//
Query:       CCD22325.1  [L=846]
Description: hypothetical protein NDAI_0A01670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-55  188.3  37.9    1.7e-55  188.3  37.9    3.8  2  UCH            Ubiquitin carboxyl-terminal hydrolase
    6.5e-11   42.4  54.3    2.7e-08   33.8  45.0    4.4  2  UCH_1          Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   1.9       1.3   1.1e+04      66      69 ..      56      59 ..       9     106 .. 0.55
   2 !  188.3  37.9   1.9e-59   1.7e-55       1     257 []     172     755 ..     172     755 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 1.3
                HHHH CS
                xxxx RF
         UCH 66 kell 69
                ++++
  CCD22325.1 56 ESMN 59
                2222 PP

  == domain 2  score: 188.3 bits;  conditional E-value: 1.9e-59
                 -EES-SSSTHHHHHHHHHHHTSHHHH.HHHHTCHHCCSSTCCCCC...................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx...................................................... RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelr.dyllsleevkkesrnkke...................................................... 44 
                 +G++N+GntCy+nsvlQcL+++ e+r ++l ++ +  ++  n ++                                                      
  CCD22325.1 172 FGYENFGNTCYCNSVLQCLYNLYEFRlNMLEYSDHLPHNYANIENrrirkldmkglkprifteasfdsnnnkpntttitntssndneidnnnninnnet 270
                 69************************88888865555555555449***************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
         UCH  45 ................................................................................................... 44 
                                                                                                                    
  CCD22325.1 271 yqdynnlnsknttnnnnnnnnkrnsfmgfqvpskqqynnnkdttvnnkqdgnnnnnnnnnstnnaksqsytakmssllgaatsnsnpnmengkdkngnv 369
                 *************************************************************************************************** PP

                 ............................................................................-.TT.TTS.TTH........... CS
                 ............................................................................xxxxxxxxxxxx........... RF
         UCH  45 ............................................................................lnesnplgkkge........... 56 
                                                                                             +          +           
  CCD22325.1 370 ntqddgiihatlmssdvtteklhsgcqdilvgrinnnnnnnrftkqqkpniidelsnskesytpifsktnnnnnnnN----------Nnniphnipsnn 458
                 **************************************************999999999999998766533322220..........123566788888 PP

                 .....................................HHHHHHHHHHHHH..SH-CCEE--HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHC CS
                 .....................................xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  57 .....................................lakalkdlfkell..kskskavsPkklkktlsklaksfsgykqqDaqEflaflLdqlhedln 116
                                                      l+++lkd+f++++  +  + +v+P++++k+l+k++  f++++qqD++Efl+flL++l ++l 
  CCD22325.1 459 ivtpvqkptseqrkkaalingpvlnvdhllnqyekanLYNSLKDIFESITenRYLTGIVAPTEFVKILKKENVLFNSMMQQDSHEFLNFLLNELRDYLP 557
                 8888888888888888888888888888888888888*************9866799*****************************************9 PP

                 CHCCCHHHHHHCCCTTSHHHHHH-EEEEE................................................................EEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................xxxxxx RF
         UCH 117 revaeekwkkhlkrndslitdlfegqlks................................................................klklkr 151
                 +            + +++it+lf+g l++                                                                 + lk+
  CCD22325.1 558 S------------TTNNFITNLFQGILTNqikcltcdnitsrdepfldfpigvkddeetnietllrnyhtremlngsnkfycnqccglqeaerIVGLKQ 644
                 9............7889***************************************************************************99***** PP

                 B-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-BEEEEEEEEEES.CTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHC CS
                 xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 152 lPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkkteekkkYeLiavvvHsG.slssGHYvayiknekngkWykydDetvkevkeee 246
                 lP+iL +hlkRf+y++    ++Kl +kv +p++l+++s+++++ +k       YeL++vv+H+G s+++GHYv+++k +++  W+ +dDetv++v+e+ 
  CCD22325.1 645 LPHILALHLKRFKYSEVkntNIKLFNKVYYPLTLNVASTFDSSIEKA------YELTGVVIHMGsSPQHGHYVSLCK-NDKFGWLLFDDETVESVSES- 735
                 **************6656779*******************9777776......************************.66788*************88. PP

                 CCTT.........CEEEEEE CS
                 xxxx.........xxxxxxx RF
         UCH 247 evls.........sayiLfY 257
                 +vl+         +ay+LfY
  CCD22325.1 736 TVLEftgdpnnqaTAYVLFY 755
                 7777788888889******* PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   1.8      0.76   6.8e+03     104     118 ..      57      71 ..       7     126 .. 0.48
   2 !   33.8  45.0     3e-12   2.7e-08       2     319 ..     173     728 ..     172     729 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.76
                 xxxxxxxxxxxxxxx RF
       UCH_1 104 sfnrflldqlekelk 118
                 s+n+   ++++++ +
  CCD22325.1  57 SMNNHSHNHTHHPHN 71 
                 222222222222222 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 3e-12
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx..xxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplr.nlals..hlakeckke..................hcLlcElgflfdmldkakglncqasnFlralssipeasa 79 
                 G En  +++Y+Ns+LQ+ly + ++r n++    hl +    +                   ++++E+ f  +  +   ++   +s   + ++++ + ++
  CCD22325.1 173 GYENFGNTCYCNSVLQCLYNLYEFRlNMLEYsdHLPH----NyanienrrirkldmkglkPRIFTEASFDSNNNKPNTTTITNTSSNDNEIDNNNNINN 267
                 66888899*******9999998888665543113322....1222456666667766666777888877664444444443333333444444444344 PP

                 xxxxxxxxxxxx....................................................xxxxxxxxxxx........................ RF
       UCH_1  80 lglileeeeete....................................................kssaislssli........................ 102
                  + ++++++ ++                                                    +                                  
  CCD22325.1 268 NETYQDYNNLNSknttnnnnnnnnkrnsfmgfqvpskqqynnnkdttvnnkqdgnnnnnnnnnsT---------Nnaksqsytakmssllgaatsnsnp 357
                 44433333221133444444455555555555555555555555555555555555444444440.........0444555555555555666666666 PP

                 ................................................................................................... RF
       UCH_1 103 ................................................................................................... 102
                                                                                                                    
  CCD22325.1 358 nmengkdkngnvntqddgiihatlmssdvtteklhsgcqdilvgrinnnnnnnrftkqqkpniidelsnskesytpifsktnnnnnnnnnnniphnips 456
                 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666677 PP

                 .....................................................................................xxxxxxxxxxxxxx RF
       UCH_1 103 .....................................................................................qsfnrflldqleke 116
                                                                                                       +f +fll++l + 
  CCD22325.1 457 nnivtpvqkptseqrkkaalingpvlnvdhllnqyekanlynslkdifesitenryltgivaptefvkilkkenvlfnsmmqqdsHEFLNFLLNELRDY 555
                 777777777777777777777777777777777777777777777777777777777777777777777777766666666533224888888888777 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 117 lketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsnekkeakvtfasilkssler...ekttrawCekCkryqpteqrktv 212
                 l +t      +++ i++l++  ++++i+cl+C + +sr++ +l + +        k++++++++++l++  +r   + +++  C++C   q  e+   +
  CCD22325.1 556 LPST------TNNFITNLFQGILTNQIKCLTCDNITSRDEPFLDFPIGV------KDDEETNIETLLRNYHTRemlNGSNKFYCNQCCGLQEAERIVGL 642
                 6665......5699******************************86633......46778999******99996666789******************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 213 knlPpvLalnakleeeeelelwktk.nwlpleiklsldedknleeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppes 310
                 k+lP++Lal++k+++ +  e+ +t+ + +++ ++            l+ + +++ +++  k YeL++vv+h+g+s ++gh+vsl+k  +k         
  CCD22325.1 643 KQLPHILALHLKRFKYS--EVKNTNiKLFNKVYYP-----------LTLNVASTFDSSIEKAYELTGVVIHMGSSPQHGHYVSLCKN-DK--------F 719
                 ************98554..2333332333333333...........3333333445678899***********9999*********3.22........4 PP

                 xxxxxxxxx RF
       UCH_1 311 qWylFNDfl 319
                  W+lF+D  
  CCD22325.1 720 GWLLFDDET 728
                 9******65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3089  (0.172291); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.49
# Mc/sec: 5163.34
//
Query:       CCD22326.1  [L=394]
Description: hypothetical protein NDAI_0A01680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-127  424.6   0.0   1.3e-127  424.3   0.0    1.1  1  Rad51     Rad51
    1.7e-12   47.4   0.0    2.5e-12   46.8   0.0    1.1  1  RecA      recA bacterial DNA recombination protein
      4e-09   36.3   0.0    6.5e-09   35.7   0.0    1.2  1  AAA_25    AAA domain
    1.2e-08   35.4   0.2    2.7e-08   34.3   0.2    1.5  1  HHH_5     Helix-hairpin-helix domain
    2.5e-05   23.8   0.0    5.7e-05   22.6   0.0    1.6  1  ATPase    KaiC
     0.0043   16.4   0.5      0.026   13.8   0.0    2.2  3  DnaB_C    DnaB-like helicase C terminal domain


Domain annotation for each model (and alignments):
>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.3   0.0  4.5e-131  1.3e-127       1     254 [.     136     388 ..     136     389 .. 0.99

  Alignments for each domain:
  == domain 1  score: 424.3 bits;  conditional E-value: 4.5e-131
                 -S-EBHHHHHHHHHSS-EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--H CS
       Rad51   1 lgfvsavellekrsellqlttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldk 99 
                 lgfv+a++++++rse+++lttGsk+lD+lLgGG+etgsite+fGefr+Gk+qlchtl+vt+q+pl++gGgegk++yidtegtfrp rlv+ia+r++ld+
  CCD22326.1 136 LGFVTAADFHMRRSEMICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDP 234
                 59************************************************************************************************* PP

                 HHHGGGEEEEE--STTHHHHHHHHTHHHHHHS-EEEEEEETTTGGGCH-------THHHHHHHHHHHHHHHHHHHHH--EEEEEEE-------.----- CS
       Rad51 100 eevlenvayaRaytiehqeellqqaaallaedkfallivDsvtalyRtdfsgrgelakRqqklgkllrtLrkladefevavvitnqvvaqvdgqaalfs 198
                 +++l+nvayaRay+++hq +ll++a+++++e++f+l+ivDsv+alyRtdfsgrgel++Rq++l+k++r+L++lad+f+vavv+tnqvvaqvdg ++ f+
  CCD22326.1 235 DDALNNVAYARAYNADHQLKLLDAASQMMSESRFSLIIVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDG-GMSFN 332
                 *********************************************************************************************.***** PP

                 -------HHHHHHHH-SEEEEEEE-STTEEEEEEES-SSS-S-EEEEEEETTEEE- CS
       Rad51 199 adpkkPigGlvlahasttRlalrkgkgeeRivkvvdsPnlpeleavfaigeeGied 254
                 +dpkkPigG+++ah+sttRla++kg+g +Ri++vvdsP+lpe+e +fai+e+Gi d
  CCD22326.1 333 PDPKKPIGGNIMAHSSTTRLAFKKGRGCQRICRVVDSPCLPEAEGIFAIYEDGIGD 388
                 ******************************************************98 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   8.4e-16   2.5e-12      29     221 ..     149     356 ..     136     367 .. 0.74

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 8.4e-16
                 ----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHH..HHHHHHHHH....HTT--EEEEESS----HH....HHHHTT--GGG-E....EE-- CS
        RecA  29 lkvetissGslaldialGiGGlpkGriieiyGpessGkttl..alhaiaeaq....kkggvaafidaehaldpk....yakklGvdidell....vsqp 113
                  ++ ++++Gs  ld+ lG GG+  G i+e++G   +Gk+ l  +l + +++        g + +id+e ++ p+     a+++G+d d+ l     ++ 
  CCD22326.1 149 SEMICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLchTLAVTCQIPldigGGEGKCLYIDTEGTFRPVrlvsIAQRFGLDPDDALnnvaYARA 246
                 5666899***********.*******************98833344555443211134579**********996333379*****97765522114554 PP

                 ...SSHHHHHHHHHHHHTTT--SEEEEE-TTT---STT--..---------HHHHHHHHHHHHHHHHHTTT--EEEEEEE-----..-----.------ CS
        RecA 114 ...dtGeqaleiadalvrsgaidlivvdsvaalvpkaeie..Gemgdskvglqarlmsqalrkltgaisksntvvifinqireki..Gvmfg.npettt 204
                    d+  + l+ a +++  +   li+vdsv al   ++    Ge++  ++ l     ++ +r l+   ++  ++v+  nq+  ++  G+ f  +p+   
  CCD22326.1 247 ynaDHQLKLLDAASQMMSESRFSLIIVDSVMALYR-TDFSgrGELSARQMHL-----AKFMRALQRLADQFGVAVVVTNQVVAQVdgGMSFNpDPKKPI 339
                 111555556677778999999***********974.5554115666666654.....4556666667788899********999875677765678889 PP

                 -HHHHHHH-SEEEEEEE CS
        RecA 205 GGralkfyasvrldvrr 221
                 GG+ +   ++ rl  ++
  CCD22326.1 340 GGNIMAHSSTTRLAFKK 356
                 *****999999998876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   2.2e-12   6.5e-09      21     188 ..     160     320 ..     143     323 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 2.2e-12
      AAA_25  21 prrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfak 119
                  ++ l++g +  g+++ l+G   tGK+ l+  la+++       g      gk+ly+++E++   +r    a++  l++d+ l  + +a+      + +
  CCD22326.1 160 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG----GEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA-----YNA 249
                 67788898889************************9996555544....89***********97777777777777788888877776664.....444 PP

      AAA_25 120 drggtlltadvdaleaaieevegvrlvviDplsralgg.....densnsdv..galvealeriarrtgaavllvhH 188
                 d++ +ll+a+     + + e  +  l+++D++ ++++      +e s++++  ++++ al+r+a+++g+av+++ +
  CCD22326.1 250 DHQLKLLDAA----SQMMSE-SRFSLIIVDSVMALYRTdfsgrGELSARQMhlAKFMRALQRLADQFGVAVVVTNQ 320
                 5444445554....445555.569********999988555567777777888*******************9865 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.2   8.9e-12   2.7e-08       5      55 ..      80     130 ..      78     132 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 8.9e-12
                 HTSTT--HHHHHHHHTTT--SHHHHHHS-HHHHHTSTTS-HHHHHHHHHHH CS
       HHH_5   5 lsvsGiGpktAlallsaGiesvedlaaadveeLakipGiGkktAeriilel 55 
                 l+v+G+  +++++l ++G  +ve++a a +++L +i+Gi++ +A++++ e+
  CCD22326.1  80 LQVNGLTTSDIKKLRENGLHTVEAVAYAPRKALLEIKGISEAKADKLLNEA 130
                 689********************************************9887 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.9e-08   5.7e-05       2     136 ..     155     283 ..     154     332 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.9e-08
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlik.....gaekygepgvfvtveepa..edlrenakslGwdlekleeegklaiidasesae 93 
                  tg + lD++l gG+  g+++ + Ge  tGK+ ++ + +++      +   + +++++ +e +   + l   a+++G d ++  ++  +a+  a++ ++
  CCD22326.1 155 TTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTcqiplDIGGGEGKCLYIDTEGTFrpVRLVSIAQRFGLDPDDALNN--VAYARAYNADH 251
                 6999**********************************9984332224444569*******9865599999***********9999..77777766654 PP

      ATPase  94 esaeekdkedleelieelaeaikeikakrvviDsitglayeek 136
                 +           +l++   ++++e + + +++Ds+ +l y+++
  CCD22326.1 252 Q----------LKLLDAASQMMSESRFSLIIVDSVMAL-YRTD 283
                 4..........578888899999999999999999999.4332 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.5   4.4e+03     194     213 ..      58      77 ..      45     105 .. 0.60
   2 ?   -0.2   0.0      0.17   5.2e+02       2      42 ..     154     195 ..     153     203 .. 0.85
   3 !   13.8   0.0   8.8e-06     0.026     119     183 ..     257     326 ..     241     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.5
                 HHCCTTSCCCCXSEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 194 DLreSgsieqdADvvlflyr 213
                 +L+e g++e d  +  f+  
  CCD22326.1  58 ELQEQGDVEDDMALASFVPI 77 
                 56666666666665555533 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.17
                 BXSSTHHHHHHCT.SBXTTXEEEEEEXTTSSHHHHHHHHHHH CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   2 lstgfkdLDklts.GlqkgdliiiAarpsmGktalalniaen 42 
                 l+tg k+LD+l++ G++ g ++ + +   +Gk+ l+ ++a +
  CCD22326.1 154 LTTGSKNLDTLLGgGVETGSITELFGEFRTGKSQLCHTLAVT 195
                 68999****99862699999*99***********99998865 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 8.8e-06
                 HHHHHHHHHTTEEEEEEEEGGGTB...TSCS....SSCCCHHHHHHHHHHHHHHHHCTSXEEEEEEXSGGGC CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 119 skarrlkkekglgliviDyLqlme...gsee....kenreqevseisrsLkalakelnvpvialsqLsrave 183
                   a ++ +e++ +li++D +  +       +     + r+  +++  r+L+ la ++ v v++  q+  +v+
  CCD22326.1 257 DAASQMMSESRFSLIIVDSVMALYrtdF--SgrgeLSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVD 326
                 5567788899********9776662331..23443569****************************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2840.89
//
Query:       CCD22327.1  [L=205]
Description: hypothetical protein NDAI_0A01690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-41  141.4   0.0    2.8e-41  141.1   0.0    1.0  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   0.0   1.5e-45   2.8e-41       3     190 .]       8     190 ..       7     190 .. 0.97

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 1.5e-45
                 HS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTT CS
  Proteasome   3 kGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgr 101
                 +G+ vv+++gkd+v++a+d r+ ++s  +s++ +eKif+   h++++++Gla D+ tl + +r++ +ly+l+++r i +e     ++++++++++++++
  CCD22327.1   8 NGGIVVAMAGKDCVAIACDLRLGSQSLGVSNN-FEKIFHY-GHVFLGITGLATDVTTLSETFRYKSNLYELKEDRAIEPE----TFTQLVSSTLYEKRF 100
                 6999*******************888886666.******7.9**************************************....*************** PP

                 TTTSEEEEEEEEE.TTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 102 rpfgvslliagvd.eeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 +p+ v+ ++ag++ + g+p++  +d +G++ e kd+++ G++s+   +++e++y+++l+ e+++e++ +al +a++rd+lsg+++ v++i
  CCD22327.1 101 GPYFVGPVVAGINsKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLESEDLFETISQALLNAADRDALSGWGAVVYII 190
                 *************8889**********************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1614.20
//
Query:       CCD22328.1  [L=137]
Description: hypothetical protein NDAI_0A01700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0029   17.4   0.0     0.0037   17.0   0.0    1.2  1  Mntp      Putative manganese efflux pump
  ------ inclusion threshold ------
       0.08   13.1   0.6       0.14   12.3   0.6    1.4  1  GBR2_CC   Gamma-aminobutyric acid type B receptor subunit 2 c


Domain annotation for each model (and alignments):
>> Mntp  Putative manganese efflux pump
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.1e-07    0.0037      38     104 ..      16      83 ..       6     107 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.1e-07
        Mntp  38 avdhwiafllLlllGlkmivealkeeeeekkekeelslksll.llaiatSiDAlavGlsLallkvnil 104
                 + + + ++++L+++  +m + +++ ++ + ++ +  ++k l+ + + a+S  Al+ Gl+++++++ i+
  CCD22328.1  16 QASRFAGATILTMIASRMTYGSIRARKVRPQAFQPNDMKILTaARGEAISALALSTGLTIGVFSMTIF 83 
                 667889*********************99998655554443314467888888999*****9999775 PP

>> GBR2_CC  Gamma-aminobutyric acid type B receptor subunit 2 coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   1.6e-05      0.14      26      38 ..     116     128 ..     113     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
     GBR2_CC  26 elDKdLEEVTMQL 38 
                  +DK+ EEVT QL
  CCD22328.1 116 SMDKETEEVTQQL 128
                 59**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1009.79
//
Query:       CCD22329.1  [L=1364]
Description: hypothetical protein NDAI_0A01710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-94  317.2  17.2    4.1e-94  315.6  17.2    1.8  1  RICTOR_N     Rapamycin-insensitive companion of mTOR, N-term
    1.1e-33  115.1  10.2      7e-30  102.9   0.1    6.7  8  RICTOR_M     Rapamycin-insensitive companion of mTOR, middle 
    7.3e-30  103.0   1.5    3.7e-28   97.6   0.3    4.3  5  RICTOR_V     Rapamycin-insensitive companion of mTOR, domain 
    2.5e-29  101.8   0.6    2.5e-29  101.8   0.6    3.7  4  RasGEF_N_2   Rapamycin-insensitive companion of mTOR RasGEF_N
     0.0093   16.2   4.6      0.042   14.1   4.6    2.1  1  ATG16        Autophagy protein 16 (ATG16)
  ------ inclusion threshold ------
          1    9.2  11.0        2.2    8.1   1.9    2.9  2  DivIC        Septum formation initiator
          3    7.1   5.0        6.4    6.0   5.0    1.5  1  DUF4407      Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> RICTOR_N  Rapamycin-insensitive companion of mTOR, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.6  17.2   1.6e-97   4.1e-94       1     372 [.     276     619 ..     276     620 .. 0.96

  Alignments for each domain:
  == domain 1  score: 315.6 bits;  conditional E-value: 1.6e-97
    RICTOR_N   1 vekandLvkllkrhpelkydlsleellkriqfmLldeskevraagyRilRylisdseslklllklkldiliirSLekdsksevEReqALkLirafleik 99 
                 vek+n L++llk+hp++++dl+l+++l+++q +Ll+e++ + + +yRi+Ryli+ ++++k l kl++  ++i+SL+k++++++EReqALkLir+f+e++
  CCD22329.1 276 VEKSNGLIDLLKKHPQIRQDLVLSSFLTTLQDLLLNENQLIASLAYRICRYLINGKDFIKSLIKLRITSFLIISLAKENSYQIEREQALKLIRSFIEYN 374
                 79************************************************************************************************9 PP

    RICTOR_N 100 kgakelsksvvralvavaehedDrlrricletLaElllldpelvveagGlrvllnalld.gsselaesllvallylLdspetrkylrkgldleillspf 197
                 +g   l+k++v+al++++e++dD+lr i+letL+El++++p+l+  ++G+rvl+ +l+d +s++la+++l+ +l+l ++++trkyl +++++++l ++f
  CCD22329.1 375 TG---LTKGLVQALISCVERQDDPLRIIALETLLELCFVNPSLIRDCHGMRVLVGLLQDySSFSLASIVLDSILQLTSTHKTRKYLLEDFNISVLNTAF 470
                 99...9********************************************************************************************* PP

    RICTOR_N 198 tdslekekkkesneeklqnsakaisslLksWsGlialsmnnfrplksLvsaLripslevrkaildllfdllrikppewsesflagrrlttransksqkk 296
                 +d   +++k + n+ek+qns+ +is +Lk+ +G++++smnnf+p+k+L+s++++p   ++++i+d+l+d lrikp+++ ++        +         
  CCD22329.1 471 SD---TNTKLSLNVEKMQNSCLLISRVLKNDNGFMLYSMNNFKPIKELLSFIQVPI--CAQYIIDVLLDALRIKPLPYRSK--------I--------- 547
                 **...899***********************************************8..***********************........1......... PP

    RICTOR_N 297 qeeneaeesaelkkkeserkren.lvdhylallllvlieaglleaLvevieees....dsslsrkatlLlgellklanrlL 372
                          +++k  +s++ +e+  +++++all+++l ++++  +++++i   +    ++sl +k+++Ll+e+++l+++l+
  CCD22329.1 548 ---------KSSKLIPSQFAKEClPINQHIALLIMILDNSNFPGYMTDLIHSVDkcdiNPSLLVKCRYLLTEYFNLKMNLV 619
                 .........2223445555677779*************************94445689*********************98 PP

>> RICTOR_M  Rapamycin-insensitive companion of mTOR, middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.97   2.5e+03      59     103 ..     361     407 ..     345     408 .. 0.69
   2 ?   -2.8   0.0       2.2   5.6e+03      70      98 ..     430     459 ..     412     463 .. 0.74
   3 ?   -0.1   0.0      0.31   7.8e+02      23      42 ..     768     787 ..     751     797 .. 0.73
   4 !  102.9   0.1   2.7e-33     7e-30       3     103 ..     806     907 ..     804     908 .. 0.94
   5 ?   -2.6   0.0       1.9   4.8e+03      30      47 ..     989    1006 ..     985    1043 .. 0.62
   6 ?    4.6   0.0      0.01        26      24      65 ..    1049    1094 ..    1028    1099 .. 0.80
   7 ?    4.3   0.0     0.013        34      21      43 ..    1140    1162 ..    1129    1169 .. 0.84
   8 ?    2.4   0.1     0.052   1.3e+02      33      60 ..    1306    1334 ..    1298    1353 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.97
    RICTOR_M  59 ddllklilssldys..vdghiRiilskaLtnssekiRlyatkhLrkl 103
                 ++ lkli s ++y+  +++ + + l ++   +++ +R++a++ L +l
  CCD22329.1 361 EQALKLIRSFIEYNtgLTKGLVQALISCVERQDDPLRIIALETLLEL 407
                 44555555555444225777777888888999999999999988765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.2
    RICTOR_M  70 dysvdghiRiilskaLt.nssekiRlyatk 98 
                 dys  + + i+l ++L+ +s+ k+R y ++
  CCD22329.1 430 DYSSFSLASIVLDSILQlTSTHKTRKYLLE 459
                 888888888899999987778888888765 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.31
    RICTOR_M  23 YfkfiGvlsssknGlklLek 42 
                   kf  +l+++++G+k+L++
  CCD22329.1 768 GCKFFKMLTTNPEGVKILKD 787
                 34788999**********86 PP

  == domain 4  score: 102.9 bits;  conditional E-value: 2.7e-33
    RICTOR_M   3 vsagepllskerleetlsrgYfkfiGvlsssknGlklLekwkiftllyklvelks.rdd.llklilssldysvdghiRiilskaLtnssekiRlyatkh 99 
                 ++ g+ ++++++l++++++gYfkfiGvl++s +G+k+L++w++ft++yk+++ +s   + +l lil++ld+++++h+ +i+ kaL+ s+ek+R++at+h
  CCD22329.1 806 NTVGN-IFNENALKTKIVQGYFKFIGVLTQSVQGVKILSRWNFFTVIYKMFDFDSkIGTkFLLLILPELDLHHSSHCCTIIGKALVVSNEKVRMKATRH 903
                 55665.********************************************9999976667*************************************** PP

    RICTOR_M 100 Lrkl 103
                 +++ 
  CCD22329.1 904 IGER 907
                 *986 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 1.9
    RICTOR_M   30 lsssknGlklLekwkift 47  
                  l s+++G +lL+++++  
  CCD22329.1  989 LLSKPYGFQLLNEINFVY 1006
                  667888999999988633 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.01
    RICTOR_M   24 fkfiGvlsssknGlklLek....wkiftllyklvelksrddllkli 65  
                  + f G ls+++ G+ lL++    +++ ++++++v++  +d+ l  i
  CCD22329.1 1049 LHFYGSLSKTEDGITLLSRtgdlVRFMNVIKRYVTNFMEDETLDEI 1094
                  6788***************666667888888888777766665555 PP

  == domain 7  score: 4.3 bits;  conditional E-value: 0.013
    RICTOR_M   21 rgYfkfiGvlsssknGlklLekw 43  
                   + f  +G++s++k+G ++L++ 
  CCD22329.1 1140 FTAFYVLGLISKTKEGCEILDEL 1162
                  567899**************985 PP

  == domain 8  score: 2.4 bits;  conditional E-value: 0.052
    RICTOR_M   33 sknGlklLekwkiftllyklvelks.rdd 60  
                  + +G kl e+ kift +++++e+   + +
  CCD22329.1 1306 NRYGPKLFENEKIFTKVMEMMEKFRfKPH 1334
                  67899***************887665554 PP

>> RICTOR_V  Rapamycin-insensitive companion of mTOR, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.2   3.2e+03      10      36 ..     829     855 ..     825     861 .. 0.71
   2 ?   -4.1   0.0         7   1.8e+04      15      28 ..     991    1004 ..     990    1006 .. 0.79
   3 ?   -0.6   0.0      0.63   1.6e+03      53      69 ..    1053    1069 ..    1049    1090 .. 0.78
   4 !   97.6   0.3   1.5e-31   3.7e-28       2      71 .]    1096    1165 ..    1095    1165 .. 0.98
   5 ?   -1.0   0.0      0.86   2.2e+03      17      39 ..    1307    1329 ..    1286    1331 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
    RICTOR_V  10 iGhigsselGielldeydivedivela 36 
                 iG   +s +G+++l+  +++  i++++
  CCD22329.1 829 IGVLTQSVQGVKILSRWNFFTVIYKMF 855
                 556666777777777777777777776 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 7
    RICTOR_V   15 sselGielldeydi 28  
                  s+++G++ll+e ++
  CCD22329.1  991 SKPYGFQLLNEINF 1004
                  67899999998766 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.63
    RICTOR_V   53 glissteegaeiLdelg 69  
                  g +s+te+g+++L++ g
  CCD22329.1 1053 GSLSKTEDGITLLSRTG 1069
                  66778888887777654 PP

  == domain 4  score: 97.6 bits;  conditional E-value: 1.5e-31
    RICTOR_V    2 klKaaLWaiGhigsselGielldeydivedivelaeespvlslRGtafyvLglissteegaeiLdelgWe 71  
                  ++K +LW++G igs+elGi lld+y++ve+iv++ ++++v+s+++tafyvLglis+t+eg+eiLdelgW+
  CCD22329.1 1096 EVKESLWCCGFIGSTELGIGLLDNYSLVENIVQISYHASVTSVKFTAFYVLGLISKTKEGCEILDELGWN 1165
                  89*******************************************************************6 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.86
    RICTOR_V   17 elGielldeydivedivelaees 39  
                   +G +l+++++i+ +++e++e++
  CCD22329.1 1307 RYGPKLFENEKIFTKVMEMMEKF 1329
                  57778999999999999999875 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1         7   1.8e+04      59      75 ..      76      92 ..      67      96 .. 0.50
   2 ?   -2.7   0.1       3.1     8e+03      48      71 ..     480     502 ..     420     509 .. 0.58
   3 ?   -0.7   0.0      0.71   1.8e+03      27      74 ..     715     762 ..     710     769 .. 0.83
   4 !  101.8   0.6   9.8e-33   2.5e-29       2     107 ..     927    1033 ..     926    1034 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 7
  RasGEF_N_2 59 LllkllstssGfkylqe 75
                 l +lls++ ++++lq+
  CCD22329.1 76 TLKTLLSVKAEINQLQQ 92
                33344555555444443 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.1
  RasGEF_N_2  48 slqhlgeigslLllkllstssGfk 71 
                 +++++ +   lL+ ++l+ ++Gf 
  CCD22329.1 480 NVEKM-QNSCLLISRVLKNDNGFM 502
                 12333.234455567777777775 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.71
  RasGEF_N_2  27 eiLeeacddkeslevlvelkpslqhlgeigslLllkllstssGfkylq 74 
                 e+Le  + ++++le+l++  + +  l  + +++ l++  +++G ++ q
  CCD22329.1 715 ELLEGPLMNTKQLEELAKSTKFIRRLLVFYRPMRLRFSNVDKGTRLAQ 762
                 5666667788999*****9999999999**************998665 PP

  == domain 4  score: 101.8 bits;  conditional E-value: 9.8e-33
  RasGEF_N_2    2 fekWgiellvnqLydqsrevvaaaleiLeeacddk.eslevlvelkpslqhlgeigslLllkllstssGfkylqelnfveeeldkWiekkneeYvkl 97  
                  ++++ +e+l++qLyd s++vva a+e+L+e++ d  +s e  +++k+ l+++  i+s++l++lls ++Gf++l+e+nfv +e+++W+++kn+eYv++
  CCD22329.1  927 LRQFKMEMLTRQLYDLSPNVVAIADEALYECIVDSdKSKEFSISFKTFLNQMVFIRSPILFELLSKPYGFQLLNEINFVYSERESWLSQKNKEYVSI 1023
                  679****************************66665****************66******************************************* PP

  RasGEF_N_2   98 vEealaealt 107 
                  vE++la++++
  CCD22329.1 1024 VENFLAKKQN 1033
                  ******9886 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   4.6   1.6e-05     0.042      56     155 ..      66     168 ..      26     171 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
       ATG16  56 ksakekeasasqsnskqsakiqsleqklaqlreelaelyksrge.......laqrllelneelqkleeklk..edeerlaeleaeraaletklkdreee 145
                   +++++       s++ +++ s ++++ ql++el+++y+++ +       +a+ + + + + + l++ ++  +++++++el +++++l ++++d++ +
  CCD22329.1  66 PLQSRQL------RSRTLKTLLSVKAEINQLQQELSQAYRRKDDaerardaTASDIFTGEYSTDHLQKHSMriKKNTQIRELDTTIKRLDKQISDLKRH 158
                 2222222......44556777777777777777777777665441111111677777766666666665542267889999999999999999999999 PP

       ATG16 146 lrekeklvqd 155
                  +e ++++++
  CCD22329.1 159 YEEIKEANEI 168
                 9999988875 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   2.0    0.0084        22      15      45 ..      76     106 ..      74     114 .. 0.85
   2 ?    8.1   1.9   0.00087       2.2      20      59 ..     125     164 ..     110     166 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0084
                 XXXHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  15 gllaykqlkqeiaalqaelaklkaeneeLea 45 
                 +l ++ ++k+ei++lq+el +   ++++ e+
  CCD22329.1  76 TLKTLLSVKAEINQLQQELSQAYRRKDDAER 106
                 5678999**************9999998875 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00087
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXX CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkdLksdedyiee 59 
                  q+++ + +++ ++ +l  ++++L+++++dLk  ++ i+e
  CCD22329.1 125 LQKHSMRIKKNTQIRELDTTIKRLDKQISDLKRHYEEIKE 164
                 5667777888999999999999999999999999999877 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   5.0    0.0025       6.4     129     230 ..      74     163 ..      64     210 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0025
     DUF4407 129 aaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld.atarlaalraelaeleaer 226
                 +   ++l   +a+i++lq+e+++a +r d+++++ ++ ++  ++ g      + +   +k ++  ++++++ el+++++  ++++++l++ ++e+    
  CCD22329.1  74 SRTLKTLLSVKAEINQLQQELSQAYRRKDDAERARDATASDIFT-G-----EYSTDHLQKHSMRIKKNTQIRELDTTIKrLDKQISDLKRHYEEI---- 162
                 44455566667777788888888877777777776666554332.2.....12333333344444444444443333222222222222222222.... PP

     DUF4407 227 aker 230
                    +
  CCD22329.1 163 ---K 163
                 ...1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1756  (0.0979419); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.45
# Mc/sec: 9126.90
//
Query:       CCD22330.1  [L=124]
Description: hypothetical protein NDAI_0A01720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-49  164.5   2.9    9.9e-49  164.4   2.9    1.0  1  IES5      Ino80 complex subunit 5
  ------ inclusion threshold ------
      0.038   14.0   0.6      0.052   13.6   0.6    1.3  1  BRE1      BRE1 E3 ubiquitin ligase


Domain annotation for each model (and alignments):
>> IES5  Ino80 complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.4   2.9   1.1e-52   9.9e-49       1     113 [.       7     122 ..       7     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 164.4 bits;  conditional E-value: 1.1e-52
        IES5   1 lekeykKlvsrndelikQeatlkkEYtTLlRKisSliavLeelekel...sketeteepkLiseetlkkvpelqwyneqislvseklqdkeeieipeel 96 
                 leke++Klv++nde++kQ+a+lkkEYtTLlRKi+S++avL+el++e+   +++++t+ep+Lis  +l+kvp+l+wyn+qi++v ++++ +e++e+p+el
  CCD22330.1   7 LEKELHKLVVKNDEFVKQDAALKKEYTTLLRKINSVVAVLKELDPEYfeqQRNHDTAEPRLISVGALQKVPKLEWYNRQITRVIQNTNGNENFELPNEL 105
                 69********************************************9988899********************************************** PP

        IES5  97 ldsyelykdtpllykde 113
                 +dsy+lykd+pllykd 
  CCD22330.1 106 IDSYKLYKDSPLLYKDI 122
                 ***************96 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.6   5.8e-06     0.052       1      58 [.       7      64 ..       7      80 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.8e-06
        BRE1  1 lqkELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdale 58
                l+kEL kl    +e  +q  +++ke+t l  k++ + a  ++ d +yf+ +r+ d+ e
  CCD22330.1  7 LEKELHKLVVKNDEFVKQDAALKKEYTTLLRKINSVVAVLKELDPEYFEQQRNHDTAE 64
                789**************************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 912.96
//
Query:       CCD22331.1  [L=767]
Description: hypothetical protein NDAI_0A01730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.5e-149  496.5   0.0   4.6e-146  486.2   0.0    2.3  2  Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   1.4e-122  409.1   0.0   3.2e-116  388.2   0.0    2.6  3  Meth_synt_1  Cobalamin-independent synthase, N-terminal domai
  ------ inclusion threshold ------
       0.16   12.0   0.1        0.4   10.8   0.1    1.6  1  RPN1_C       26S proteasome non-ATPase regulatory subunit RPN


Domain annotation for each model (and alignments):
>> Meth_synt_2  Cobalamin-independent synthase, Catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00026       1.6     126     186 ..     164     227 ..     145     250 .. 0.76
   2 !  486.2   0.0  7.7e-150  4.6e-146       1     323 [.     439     759 ..     439     760 .. 0.99

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00026
                  EEE-HHHHHHTSEE-.TTS-HHH.HHHHHHHHHHHHHH.HHHHTT-SEEEEE-TTSSTT--SSG CS
  Meth_synt_2 126 lltGpvtilnwsfvr.ddvdrae.aaaqialalrdevk.dLeaaGikviQiDepalreGlplkk 186
                  +l Gpv+ l+ +    d  d++  ++ +  l l  e+  +L aaG++ +Q+Dep l   lp ++
   CCD22331.1 164 VLVGPVSFLYLGKADkDSLDLEPlSLLEKLLPLYVEILqKLAAAGATEVQLDEPTLVLDLPKEV 227
                  5678888888887762334554325667777777777669**************9998888877 PP

  == domain 2  score: 486.2 bits;  conditional E-value: 7.7e-150
                  S-BB--SB---SS-----------------HHHHHHHHHHHHHHHHHHTT--SCBE-B-TT-SSTTHHHHTTSTTEE--SS--EEEETTEEE---EE- CS
  Meth_synt_2   1 lpTttiGSfPqtaevrearaevkkgelseeeyekaireeiekvvrrqeelgvDvlvhgepeRgdmveyfgealdgfaftkngwvqsygsrcvrppiiv 98 
                  +pTttiGSfPqt+++r +r+++ kg++s+eeye++i++eiekv+r qee+++DvlvhgepeR+dmv+yfge+l+g+aft+ngwvqsygsr+vrppiiv
   CCD22331.1 439 FPTTTIGSFPQTKDIRINRNKFTKGTISAEEYEQFINSEIEKVIRFQEEIDLDVLVHGEPERNDMVQYFGEQLKGYAFTTNGWVQSYGSRYVRPPIIV 536
                  8************************************************************************************************* PP

                  SS---SS-SSTHHHHHHTTS-SS-BEEEEE-HHHHHHTSEE-TTS-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEE-TTSSTT--SSG.GGHHHHHHH CS
  Meth_synt_2  99 gdvsrpaamtvkesalaqsltdkpvkglltGpvtilnwsfvrddvdraeaaaqialalrdevkdLeaaGikviQiDepalreGlplkk.adwaayldw 195
                  gd+srp+am+vkes++aqslt+k vkg+ltGp+t+l+wsf+r dvd++++a q+alalrdev+dLeaaGi viQ+Depa+reGlpl+  a+++ y +w
   CCD22331.1 537 GDLSRPKAMSVKESVYAQSLTKKLVKGMLTGPITCLRWSFPRVDVDQKTQALQLALALRDEVNDLEAAGIRVIQVDEPAIREGLPLRAgAERSDYQQW 634
                  ****************************************************************************************9********* PP

                  HHHHHHHHHTTS-TTSEEEEEES-S--CCCHHHHHTT--SEEEESBSSS-SSGGGGTTT.T---SEEEEBSS-TTSSS--THHHHHHHHHCHHCTS-S CS
  Meth_synt_2 196 aveafrldtiaaaddtqvhtHlCyselndilsaiaaldvDvitieasrsdeellealee.vkygrgvglGvydihsprvpsmeeiaalikkaldvapk 292
                  a+eafr++t+++a++tq+h+H+Cys+l+ +  +i+ald+Dv++ie+s++d    ++++e ++y++++glG++dihsprvps+ee+  +i+++l+++p+
   CCD22331.1 635 AAEAFRVATSGVANKTQIHSHFCYSDLDPN--HIKALDADVVSIEFSKKD--DANYIAEfKDYPNHIGLGLFDIHSPRVPSKEEFITKIETILKTYPA 728
                  *****************************9..******************..8899999899************************************ PP

                  TSB-BB-SS-STTS-HHHHHHHHHHHHHHHH CS
  Meth_synt_2 293 erlwvnPdCGLktrkreearaalknmvdaAk 323
                  e++wvnPdCGLktr++ee+r +l+nmv+aAk
   CCD22331.1 729 EKFWVNPDCGLKTRGWEETRLSLTNMVNAAK 759
                  ******************************8 PP

>> Meth_synt_1  Cobalamin-independent synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  388.2   0.0  5.4e-120  3.2e-116       2     309 ..       4     321 ..       3     325 .. 0.97
   2 ?   -4.2   0.0       1.6   9.6e+03      15      56 ..     452     493 ..     448     497 .. 0.79
   3 !   18.1   0.0   2.5e-07    0.0015     137     264 ..     548     680 ..     525     700 .. 0.67

  Alignments for each domain:
  == domain 1  score: 388.2 bits;  conditional E-value: 5.4e-120
                  EB-S---SSTTTTHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBEEES---SS-HHHHHHHHTT---GGGTT.SSSSSHHHHHHHHHS CS
  Meth_synt_1   2 ssilGfPriGekRelkkalesywkgkiseeeLektakeLrakhwkkqkeagidlipvndfslYDhvLdtavllgaiPerfkleekkeeldtyFalaRG 99 
                  s +lGfPriG++Relkk++esyw+gk++ ++L k++keLra++wk qk+ag+d+ip+ndfs+YDhvLd+++l+++iP+r+++  + + +dt+Fa++RG
   CCD22331.1   4 SAVLGFPRIGPNRELKKVTESYWNGKVTVDDLFKVGKELRAQNWKLQKDAGVDIIPSNDFSYYDHVLDLSLLFNVIPDRYTK-YQLSPIDTLFAMGRG 100
                  679*****************************************************************************86.799************ PP

                  C..........TTCT--EEEESTTSS-EEEE-BE-SS.----S-THHHHHHHHHHHTTGGEEEEEE-HHHHHHT-EETTCC...-HCHHHHHHHHHHH CS
  Meth_synt_1 100 k..........kdvaalemtkwFntnYHYlvPelekdtefklaseklleevkeakalgieakpvllGpltflkLskakeek..veklellekLlpvYk 185
                              dv+alem+kwF++nYHY+ P+++++t+fkl+ +k+++e+ eak+lgi+++pvl+Gp++fl+L+ka++++  +e+l+llekLlp+Y 
   CCD22331.1 101 LqrkatetekaVDVTALEMVKWFDSNYHYVRPTFSHSTQFKLNGQKPVDEFLEAKELGIQTRPVLVGPVSFLYLGKADKDSldLEPLSLLEKLLPLYV 198
                  9999*999998899*****************************************************************99888999*********** PP

                  HHHHHHHHTT-SEEEEE-GGGGSSGCHHHHHHHHHHHHHHTCCTTTSEEEEE--SS-.CCHHHHHTTSSTSEEEEETSSHCHHHHHHHHCTT.TTSEE CS
  Meth_synt_1 186 elleeLkeagvewvqidEPalvldlekeelealkeaYeelakekkelklllatyFdsvaealellaelpveglglDlvraeenlealkkaglpedkvL 283
                  e+l++L++ag++ vq+dEP+lvldl+ke ++a+k+aY+ l +++  +k++latyF++v  +l++l+elp++g+++D++ra e+++++++  + ++++L
   CCD22331.1 199 EILQKLAAAGATEVQLDEPTLVLDLPKEVQAAVKTAYTFLGNQAGLPKITLATYFGTVVPNLDALKELPIAGFHFDFIRAAEQFDDVAS-IIGANQTL 295
                  ****************************************************************************************9.799***** PP

                  EEEEE-SSS-B---HHHHHHHHHHHH CS
  Meth_synt_1 284 saGvidGrniWradlekalelleela 309
                  s+G++dGrniW++d++k+ e +++  
   CCD22331.1 296 SVGIVDGRNIWKNDFAKSSEFVQKAI 321
                  ********************999865 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.6
                  HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHCTT-SBE CS
  Meth_synt_1  15 elkkalesywkgkiseeeLektakeLrakhwkkqkeagidli 56 
                  +++   +++ kg+is+ee e+  ++  +k ++ q+e ++d+ 
   CCD22331.1 452 DIRINRNKFTKGTISAEEYEQFINSEIEKVIRFQEEIDLDVL 493
                  556667889999999999999999888888888888888876 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 2.5e-07
                  HHHHHHHHHTTGGEEEEEE-HHHHHHT-EETTCC.-HCHHHHHHHHHHHHHHHHHHHTT-SEEEEE-GGGGSSG.......CHHHHHHHHHHHHHHTC CS
  Meth_synt_1 137 leevkeakalgieakpvllGpltflkLskakeekveklellekLlpvYkelleeLkeagvewvqidEPalvldl.......ekeelealkeaYeelak 227
                   e+v  ++ +   +k +l Gp+t l  s  + +  ++++   +L  + ++ +++L++ag++++q+dEPa+   l       +++ ++ + ea++   +
   CCD22331.1 548 KESVYAQSLTKKLVKGMLTGPITCLRWSFPRVDV-DQKTQALQLALALRDEVNDLEAAGIRVIQVDEPAIREGLplragaeRSDYQQWAAEAFRVA-T 643
                  44444444555568999***********998877.88888888999999999*****************977663333222233344444444444.4 PP

                  CTTTSEEEEE--SS-.CCHHHHHTTSSTSEEEEETSS CS
  Meth_synt_1 228 ekkelklllatyFdsvaealellaelpveglglDlvr 264
                  +    k  +++ F   +   + +++l+ + +++++ +
   CCD22331.1 644 SGVANKTQIHSHFCYSDLDPNHIKALDADVVSIEFSK 680
                  5555666666666666666666666666666666655 PP

>> RPN1_C  26S proteasome non-ATPase regulatory subunit RPN1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   6.7e-05       0.4      17      51 ..     339     374 ..     333     376 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.7e-05
      RPN1_C  17 ttPVlLaageRAELateeYiplssv.LEgivilkkn 51 
                 +tPV L+++++ + +   Y+++++  LE++v++ kn
  CCD22331.1 339 HTPVDLNNENKLNAELKNYFSFATQkLEEVVVIAKN 374
                 69*********9999999*9987766*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5390.18
//
Query:       CCD22332.1  [L=507]
Description: hypothetical protein NDAI_0A01740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-89  297.8   0.0    1.8e-88  296.5   0.0    1.6  2  Chorismate_bind  chorismate binding enzyme
    2.5e-30  105.6   0.0    2.7e-28   99.0   0.0    3.4  4  Anth_synt_I_N    Anthranilate synthase component I, N termina
  ------ inclusion threshold ------
       0.03   14.4   0.0      0.062   13.4   0.0    1.4  1  POR              Pyruvate ferredoxin/flavodoxin oxidoreductas
       0.16   12.2   0.2       0.62   10.2   0.0    2.0  2  DUF4150          Domain of unknown function (DUF4150)


Domain annotation for each model (and alignments):
>> Chorismate_bind  chorismate binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.47   2.1e+03      40      88 ..      42      99 ..      33     100 .. 0.65
   2 !  296.5   0.0   3.9e-92   1.8e-88       2     258 .]     230     485 ..     229     485 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.47
                     HHHHHHHHHCT.BSS.SEEEEE.......EETTEEEEEEESSEEEEEETTSEEEEECE CS
  Chorismate_bind 40 plalyralrar.npa.pysfll.......eledsellgaSPElllkveggrrietepi 88
                     p  +y +l +  np+ p sfll       el++++++g+ P  ++k+  ++ ie  p+
       CCD22332.1 42 PHVAYLKLAQLnNPNrPESFLLesaktnnELDRYSFIGVAPRKVIKTGPNEGIEYDPL 99
                     4555666665425542556666666555555558999999999999887777777776 PP

  == domain 2  score: 296.5 bits;  conditional E-value: 3.9e-92
                      HCHHHHHHHHHHHHHHTTS-SEEEEEEEEEECESS-B-HHHHHHHHHCTBSSSEEEEEEETTEEEEEEESSEEEEEETTSEEEEECEEEEEEHS CS
  Chorismate_bind   2 redYaeavekvkeeiragdlykvvlsrrlkaeleaavdplalyralrarnpapysflleledsellgaSPElllkveggrrietepiaGTrarg 95 
                      +e Y+++v+++k++i++gd+ + v+s+r+  +  ++++p+++yr+lr+ np+py f++++ d++++gaSPEll+k ++++++ t+piaGT +rg
       CCD22332.1 230 KEGYEAHVSNLKAHIKKGDIIQGVPSQRVARP--TSLHPFNIYRHLRTVNPSPYLFYIDCLDFQIIGASPELLCKSDNKNKVITHPIAGTVKRG 321
                      789*****************************..99*****************************************99*************** PP

                      SSHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCBSCCEEEEECCEEEEEETTEEEEEEEEEEEESTT--HHHHHHHCSS-CCCSEESHHH CS
  Chorismate_bind  96 ktpeedealeeelledeKeraEhlmivdlirndLgkvakpgsvkvpelfkverysevlhlvstiegelkedvslldllkalfPtgavtGaPkkr 189
                      +t eed  l+++l+++ K+raEh+m+vdl+rnd+++v+ p + +v++l +v+++s+v+hlvs+++g+l++d++ +d+++++fP+g+v+GaPk +
       CCD22332.1 322 STTEEDDILADQLRGSLKDRAEHVMLVDLARNDINRVCDPMTTNVDKLLTVQKFSHVQHLVSQVSGTLRPDKTRFDAFRSIFPAGTVSGAPKVK 415
                      ********************************************************************************************** PP

                      HHHHHHHHSSS--TTTTSEEEEEETTS-.EEEEEE-SEEEEETTEEEEEEEEEEETT--HHHHHHHHHHH CS
  Chorismate_bind 190 ameiidelEearRgvYaGavgyldadge.aelavvIRtavvkdkelrlgaGaGIvadSdpeaEyeEtlaK 258
                      ame+i+elE +rRgvYaGavg ++ dg+ +++++++Rt+v+k++ ++l+aG+GIv dSd  +Ey Et++K
       CCD22332.1 416 AMELIAELEGERRGVYAGAVGNWSYDGKsMDTCIALRTMVYKEGIAYLQAGGGIVYDSDEYDEYIETMNK 485
                      *************************8866**************************************998 PP

>> Anth_synt_I_N  Anthranilate synthase component I, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.0   5.9e-32   2.7e-28       2     141 ..      39     173 ..      38     174 .. 0.87
   2 ?   -2.5   0.0       1.2   5.3e+03      66     110 ..     199     245 ..     177     260 .. 0.55
   3 ?   -0.4   0.0      0.26   1.2e+03      33      58 ..     290     321 ..     262     365 .. 0.70
   4 ?    1.8   0.0     0.058   2.6e+02      90     102 ..     430     442 ..     366     451 .. 0.85

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 5.9e-32
  Anth_synt_I_N   2 dltplsvylklaeee.....hkflLeSaeneggegrySfigldpflelkskngevevegpegeeleeeepldalrellerfrsaedseptelpfvg 92 
                    dltp  +ylkla+ +     ++flLeSa+++++ +rySfig++p+ ++k  +g          e  e++pl++l++ +++ +   ++ p+ ++++g
     CCD22332.1  39 DLTPHVAYLKLAQLNnpnrpESFLLESAKTNNELDRYSFIGVAPRKVIK--TGP--------NEGIEYDPLTILEKEMSKSK-LAENIPGIPKLSG 123
                    5899********998889999*******977777**********55533..333........3344578*************.54667999***** PP

  Anth_synt_I_N  93 GlvGylgYDlvreie.klpksakddlnlpdarlilydtlivfDhkerrly 141
                    G++Gy++YD+vr++e k ++  kd l +p+a+l+l+dt+i+fD++ +r +
     CCD22332.1 124 GAIGYISYDCVRYFEpKTERPLKDLLHVPEAYLMLCDTIIAFDNVFQRFQ 173
                    *****************9999999999*******************9986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
  Anth_synt_I_N  66 pldalrellerfrsaedseptelpfvgGlvGylgYDl.vreie.klp 110
                    + ++l ++ + +   e+++ +  +     vG  gY++ v +++ +++
     CCD22332.1 199 IIKILTNTSDPIPYPEQPKIKLGQTFTSNVGKEGYEAhVSNLKaHIK 245
                    44444444444443333333333344556777777776666666665 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.26
  Anth_synt_I_N  33 ySfigldpflelkskngeveveg......peg 58 
                    + +ig++p l +ks+n+   +++      + g
     CCD22332.1 290 FQIIGASPELLCKSDNKNKVITHpiagtvKRG 321
                    78999999998887666555555566665333 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.058
  Anth_synt_I_N  90 fvgGlvGylgYDl 102
                    ++ G+vG ++YD 
     CCD22332.1 430 VYAGAVGNWSYDG 442
                    689*********6 PP

>> POR  Pyruvate ferredoxin/flavodoxin oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.4e-05     0.062      57     120 ..     444     499 ..     437     506 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
                 SEEEEEESSHHHHHHHGGGEEEEEEEEEECTCGTT-CCHHHCTS-HHHHHHHT-EEEEE-HHHH CS
         POR  57 eadllvaldaetlsehldglkpggiiiynseelkpdelkkakeeerelkerlgvrvygvdatki 120
                   d  +al  + ++e +++l++gg i+y+s+e ++  ++ +k++++ +          v a++i
  CCD22332.1 444 SMDTCIALRTMVYKEGIAYLQAGGGIVYDSDEYDEYIETMNKMMANHNT--------IVQAEEI 499
                 67999999999999*****************************998765........5555555 PP

>> DUF4150  Domain of unknown function (DUF4150)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00014      0.62       8      76 ..     198     262 ..     192     268 .. 0.85
   2 ?   -2.6   0.0       1.4   6.1e+03      82     102 ..     345     365 ..     336     368 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00014
     DUF4150   8 DvCltpagpsvvPiPYpniaksadaakgtktVlidgkpvlnkgsviststGDepGtagGvvSgtvkgka 76 
                 D+++  +++   PiPYp   k +  + +t +V  +g ++++ + +  + +GD     +Gv S+ v  ++
  CCD22332.1 198 DIIKILTNT-SDPIPYPEQPKIKLGQTFTSNVGKEGYEAHVSNLKAHIKKGD---IIQGVPSQRVARPT 262
                 555555554.38****************************************...77888888887665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.4
     DUF4150  82 sfdvkiegkpavrltdltlqN 102
                  + v +  + ++r  d++++N
  CCD22332.1 345 VMLVDLARNDINRVCDPMTTN 365
                 556667778899999**9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3691.44
//
Query:       CCD22333.1  [L=473]
Description: hypothetical protein NDAI_0A01750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-84  281.9   0.0    9.3e-84  281.1   0.0    1.4  1  PP2C      Protein phosphatase 2C
  ------ inclusion threshold ------
      0.093   12.8   0.0       0.32   11.1   0.0    1.9  1  DUF1836   Domain of unknown function (DUF1836)


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.1   0.0     1e-87   9.3e-84       2     255 ..      23     277 ..      22     280 .. 0.97

  Alignments for each domain:
  == domain 1  score: 281.1 bits;  conditional E-value: 1e-87
                 EEEEEEECCCCSSHHEEEECCCCTCTTCCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCCT- CS
        PP2C   2 dlgaselqgarksmedahislanlesssgkssvsffavfdghggseaakyarehleeilksqksfeelekleqalrksfladtdeelksskantepsks 100
                 ++g++++qg+r+smed+hi ++n  ++++k++++f+ vfdghggs +a+y++e++  il++q+sf++  +l +al++++l+ tde l ++    + ++s
  CCD22333.1  23 AFGLCAMQGWRMSMEDSHIVEPNVLQEGDKDHIAFYSVFDGHGGSGVAEYCGEKVTSILQQQQSFKDR-DLTRALIDTYLK-TDEALLNDPIL-KNDHS 118
                 5789****************************************************************.9***********.9****995555.68*** PP

                 EEEEEEEEEETTE..EEEEEESS-EEEEEETTEEEEECS---STTSHHHHHHHHHTT--EEECCEEETTTBSBSB-EE-GGGTCCCC...CCSTSB--- CS
        PP2C 101 Gstavvalirgtk..lyvAnvGDSravLcrkgnakkeltedHkpsdedEreRIeeaggsvsngegrvngsLavsRalGDlelkpket...eeqlvsaeP 194
                 G+ta+++li++ +  l+++n GDSr+vL+++g ak +l++dHkp++++E++RI++a+g+v+  + rvng+La+sRa+GD+e+k++++   +eq+v++ P
  CCD22333.1 119 GCTATSILISKLQnvLICGNSGDSRTVLSTNGVAK-TLSYDHKPTLTSEKSRITAADGFVE--MDRVNGNLALSRAIGDFEFKNNKQlgpHEQIVTCVP 214
                 **********************************9.*************************..*********************999************ PP

                 EEEEEEE-TT.EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHT.HHHHHHHHHHHHHHHCCHH CS
        PP2C 195 dvtsvkltee.defliLacdGlwdvlsdqeavdlvrdelekkk.speevaeelvdeaiargse 255
                 d+ +++l++e def+iLacdG+wd+l++qe+vdl+++ ++k++ s+++++ +l+d ++++++e
  CCD22333.1 215 DIIKHNLNYEkDEFVILACDGIWDCLTSQECVDLIHYGINKGDmSLNDISSRLIDVCCSPTTE 277
                 *****************************************99***************99987 PP

>> DUF1836  Domain of unknown function (DUF1836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.5e-05      0.32      22      75 ..      79     134 ..      68     158 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.5e-05
     DUF1836  22 qvleslkrnedkvltktminNYvKk..kllekpekKkYskeqvarlilitilknvl 75 
                 ++l++ ++ +d+ lt + i+ Y K    ll++p  K  +    a  ili+ l+nvl
  CCD22333.1  79 SILQQQQSFKDRDLTRALIDTYLKTdeALLNDPILKNDHSGCTATSILISKLQNVL 134
                 34444556677*************97789********9999999999*****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3299.68
//
Query:       CCD22334.1  [L=176]
Description: hypothetical protein NDAI_0A01760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.50
# Mc/sec: 1061.69
//
Query:       CCD22335.1  [L=804]
Description: hypothetical protein NDAI_0A01770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-14   52.9   1.9    4.1e-11   42.9   0.2    3.2  3  Myb_DNA-binding  Myb-like DNA-binding domain
    1.3e-10   41.4   1.3      1e-08   35.3   0.4    3.1  3  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.2   4.6e-15   4.1e-11       2      46 .]     141     185 ..     140     185 .. 0.96
   2 !    6.6   0.2     0.001         9       2      14 ..     559     571 ..     558     572 .. 0.90
   3 ?    0.9   0.0      0.06   5.4e+02      29      44 ..     585     600 ..     578     602 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 4.6e-15
                      SSSBHHHHHHH..HHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 gkWteeEdelL..leavkkhGnrWkkIaerlggRtekqcrsrwrnyl 46 
                      ++W +e+d+lL  l+ +kk+G  Wk+Ia+++ +Rt+++c+ rwr+++
       CCD22335.1 141 SSWDPEDDLLLrhLKEIKKMG--WKEIAQYFTNRTPNACQFRWRRLK 185
                      69*******************..*********************985 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.001
                      SSSBHHHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLle 14 
                      + Wt+eEd lL+e
       CCD22335.1 559 NDWTKEEDALLIE 571
                      67*********97 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.06
                      HHTSS-HHHHHHHHHH CS
  Myb_DNA-binding  29 rlggRtekqcrsrwrn 44 
                       l++++e +++sr +n
       CCD22335.1 585 LLPNKSESEIQSRINN 600
                      699**********887 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.4   1.1e-12     1e-08       1      45 [.     143     186 ..     143     198 .. 0.79
   2 ?   -2.1   0.0      0.54   4.8e+03      21      49 ..     453     484 ..     451     493 .. 0.62
   3 ?    3.1   0.0     0.013   1.2e+02       1      10 [.     561     570 ..     538     580 .. 0.87

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.1e-12
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLrp 45 
                     W++e+d +L+ l e     Wk+Ia+ + +Rtp++c++rw++ L++
      CCD22335.1 143 WDPEDDLLLRHLKEIKKMGWKEIAQYFTNRTPNACQFRWRR-LKS 186
                     7777776666666666679********66************.863 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.54
  Myb_DNA-bind_6  21 knIaealn...rRtpkqcfdrwknkLrpkisr 49 
                     ++I++ ln   rR ++  +d+++n+  +++++
      CCD22335.1 453 TSISSTLNpksRRESLVKKDYYLNRRTSNVND 484
                     67888888776555555566666644444444 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.013
  Myb_DNA-bind_6   1 WteeEdeiLl 10 
                     Wt+eEd +L+
      CCD22335.1 561 WTKEEDALLI 570
                     8888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1569  (0.0875119); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 5386.01
//
Query:       CCD22336.1  [L=696]
Description: hypothetical protein NDAI_0A01780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-07   30.6   0.0    5.2e-07   29.4   0.0    1.7  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   2.9e-11   5.2e-07       1      70 []     104     174 ..     104     174 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 2.9e-11
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 ++++n+p+ +++e+L +++s           +   +g  +g af +F++ e+ ++ +e lngk++ggr+l+
  CCD22336.1 104 IVIKNIPFAIKREQLLDVLSRMDLPLPYAFNYHfDNGVFRGLAFANFTNTEETTAVIEGLNGKEIGGRKLR 174
                 78*******************88887777777778*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3829  (0.213565); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                       181  (0.0100954); expected 17.9 (0.001)
Passed Fwd filter:                        73  (0.00407162); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.71u 0.39s 00:00:02.10 Elapsed: 00:00:00.61
# Mc/sec: 3414.78
//
Query:       CCD22337.1  [L=89]
Description: hypothetical protein NDAI_0A01790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-16   58.9   3.2    4.4e-16   58.6   3.2    1.1  1  Sec61_beta  Sec61beta family


Domain annotation for each model (and alignments):
>> Sec61_beta  Sec61beta family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   3.2   2.5e-20   4.4e-16       1      40 [.      42      81 ..      42      82 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 2.5e-20
                XXXXXXXXXX----SS-B-THHHHHHHHHHHHHHHHHTSS CS
  Sec61_beta  1 SsaGLlryyeedapgikidPkvVlvlsvafiasVilLhil 40
                Ssa++l++++++a g+ +dP+vV++l+vafi+sVi+Lh++
  CCD22337.1 42 SSANILKIFTDEADGLSVDPLVVMFLAVAFIFSVIALHVV 81
                9*************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 670.44
//
Query:       CCD22338.1  [L=602]
Description: hypothetical protein NDAI_0A01800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-35  123.2   0.0    1.9e-35  122.4   0.0    1.4  1  tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, 


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.0   1.1e-39   1.9e-35       1     179 []     111     443 ..     111     443 .. 0.96

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 1.1e-39
                   EEEEETTSEEEEE-SSSHHHHHHHHHHHEEEB.GGSSEEEEEEEEEEBTTTSTBC.TTTB-SEEEEEEEEEEES.GGGHHHHHHHHHHHHHHHHHHT CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   1 YkledrndreyiLkPtneetfvelirdevlrs.krLPlklyqiqtkyRdEksdsr.GLlRvreFhqkdgyvfha.easlddslrdlikaisriferl 94 
                   +kl+d +++e++L +t ee  ++l+r   ++s k+LP+ +yqi+ kyRdE +  r GLlR++eF++kdgy+f + e+++ ++++++ +++ +if++l
    CCD22338.1 111 FKLKDGKKNEFCLTATCEEDSTQLMRGF-INSyKDLPVLVYQIGKKYRDEIR-PRgGLLRGKEFIMKDGYSFAKnEQESIEIFNKMNEVYFNIFKDL 205
                   899***********************77.***888****************9.777******************9999******************* PP

                   T.SCEEEEEEGTTSCBTTSEEEEEEEEETT................................................................... CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................... RF
  tRNA-synt_2b  95 glefraiielmsaksadykdkkefeavses................................................................... 124
                    +++   i + +  ++ ++ +kef ++ +s                                                                   
    CCD22338.1 206 NVPVVSAIADSG--EMGGSLSKEFHLLHPSgedtiytcsscsnvstmekcesfpqsdkegqydkdvsvryglsrdhstlicyyfpqnrelnwnlark 300
                   *98665555544..578******************************************************************************** PP

                   .......................................................................................TSEEEEEEEE CS
                   .......................................................................................xxxxxxxxxx RF
  tRNA-synt_2b 125 .......................................................................................ltkgieigti 134
                                                                                                            k +e+g+ 
    CCD22338.1 301 aidydidmflsdtpndkivkiykdsvediifakvvrvmdirlssranfpdfpltqylknnfsqidevsivnaeseeicgscgeghlvGAKSVELGHT 397
                   **************************************************************************************88899****** PP

                   EEEETHHHHHTTEEEECTTS.SEEEEEEEEEEEEHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b 135 qklgtrlserlgatvldenn.reksvimicaaigveRllsaileqn 179
                   ++lgt++s+ l++t++d++n + + v+m+c++igv+R+++a+ e n
    CCD22338.1 398 FNLGTKYSKPLSVTYMDKENnKGQLVHMGCYGIGVSRIIGAMSEMN 443
                   *************99987664999*****************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 4607.62
//
Query:       CCD22339.1  [L=570]
Description: hypothetical protein NDAI_0A01810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-77  258.5   0.3    1.1e-76  258.0   0.3    1.2  1  PALP            Pyridoxal-phosphate dependent enzyme
    4.7e-41  138.5   0.0    5.3e-26   90.2   0.0    2.7  2  Thr_dehydrat_C  C-terminal regulatory domain of Threonine deh


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.0   0.3   1.3e-80   1.1e-76       4     277 ..      69     342 ..      66     364 .. 0.96

  Alignments for each domain:
  == domain 1  score: 258.0 bits;  conditional E-value: 1.3e-80
                 CSSS--EEEECCTCCCCCCEEEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHHHHHTT- CS
        PALP   4 gigpTPlvrlprlskelgvplflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadaspekvallrllGa 102
                 +i+++P+ +  +ls +l++++ lK+E+l p  SfK+Rga++++a+l+  +++++v+++s+GNh++++A+aa++l++++tiv+p ++++ k +   +lG 
  CCD22339.1  69 VIKESPVTAGVGLSSRLNTNVQLKREDLLPVFSFKLRGAYNMIAKLDDSQRNQGVIACSAGNHAQGVAFAAKHLNIPATIVMPVSTPSIKYQNVSRLGS 167
                 68889999999**************************************************************************************** PP

                 EEEEECCHHHHHHHHHHHHHHHSTTCEE--TTTSHHHHHHHHTHHHHHHHHTT..TTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEEEECTTCGGT CS
        PALP 103 evvevggdydeavaaaaelaaegegaylvsqfdnptviegygtiglEileqlg..gkpdavvvpvGgGgliaGiaaglkerrpdvrvigvepegsdala 199
                 +vv++g+d+dea+a + +la+e +g +++++fd+p+vi+g+gt+++Eil+q+   +k+ av+vpvGgGgl+aG++a+lk   p++++igve+  +++l 
  CCD22339.1 168 QVVLYGNDFDEAKAECTKLAEE-RGLTNIPPFDHPYVIAGQGTVAMEILRQVHnaNKIGAVFVPVGGGGLVAGVGAYLKRIAPHIKIIGVETHDAATLQ 265
                 **********************.**************************9999899999**************************************** PP

                 TCCS..S.SS..B.SSS.CCSTCSCGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHH CS
        PALP 200 rslragrrvtvpvsdtiadglavgspselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaalklr 277
                 +sl++grr++++v   +adg +v+  +e++f+++++ vde+v v+++e+++a++ + ++++ +veps+a ++a++  +
  CCD22339.1 266 TSLKHGRRTPLSVVGPFADGTSVRLIGEETFRVAQEVVDEVVLVNTDEICAAVKDVFEDTRSIVEPSGALSVAGM-KK 342
                 **************************************************************************9.33 PP

>> Thr_dehydrat_C  C-terminal regulatory domain of Threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.1   5.3e-16   4.8e-12       1      90 [.     377     474 ..     377     474 .. 0.85
   2 !   90.2   0.0     6e-30   5.3e-26       2      91 .]     480     568 ..     479     568 .. 0.97

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 5.3e-16
                     HHHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX.X.......XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   1 eraevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkage.k.......ngkvLvgvevsqaee.ldelierleklgykvedlsknel 86 
                     era +geg+e +l+v++p+ pGa+kk  + + +r  +T+f+Yr+++          ++ +   ++v ++e+  ++ i++l+ lg++ +d s+ne+
      CCD22339.1 377 ERAVLGEGKEVFLLVTIPDIPGAFKKLQKVIHPRS-VTEFSYRYNEHrHesssevpKAYIYTSFSVVDREKeIKQVIQQLHTLGFEAVDISDNEM 470
                     7999**********************999999999.*******8654321222222799*****987665549********************** PP

                     XXXX CS
  Thr_dehydrat_C  87 lkeh 90 
                     +k h
      CCD22339.1 471 AKSH 474
                     *987 PP

  == domain 2  score: 90.2 bits;  conditional E-value: 6e-30
                     HHTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Thr_dehydrat_C   2 raevgegleallavefpeqpGaLkkFlellggrndiTlfeYrkagekngkvLvgvevsqaeeldelierleklgykvedlsknellkehl 91 
                     +++++  +e+++++efpe+pGaL+kFl+ l++++++Tlf+Yr++g + gkvL g++v+ +e+  ++++ le+lgy++ d+++n +++++l
      CCD22339.1 480 GGASKVPNERIVSFEFPERPGALTKFLSGLSESWNLTLFHYRNHGSDMGKVLTGISVPPREN-LTFQKFLEDLGYSYCDETDNMVYQKLL 568
                     678999********************************************************.9*********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4060.32
//
Query:       CCD22340.1  [L=468]
Description: hypothetical protein NDAI_0A01820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2241  (0.124993); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3361.36
//
Query:       CCD22341.1  [L=611]
Description: hypothetical protein NDAI_0A01830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-59  202.2   0.0    1.4e-59  201.8   0.0    1.2  1  FAD-oxidase_C  FAD linked oxidases, C-terminal domain
    4.1e-36  123.8   0.0    9.6e-36  122.6   0.0    1.6  2  FAD_binding_4  FAD binding domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8   0.0   1.5e-63   1.4e-59       3     250 .]     353     598 ..     351     598 .. 0.96

  Alignments for each domain:
  == domain 1  score: 201.8 bits;  conditional E-value: 1.5e-63
                    SEEEEEEEEESSHHHHHHHHHHHHHHT---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE... CS
  FAD-oxidase_C   3 earavalvafpsfeaavkavreiaqagiipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadvlv 98 
                    + ++va+v+fps+++a+++++ ++q+gi++ alel+d+++++l+++   +  + ++ e++++++++ g  ++ ++e ++ ++e+i++++  +++++
     CCD22341.1 353 KFETVAVVSFPSIQDAASCASNVIQQGIQLNALELLDDNMMKLINKSGAT-TRSDWIEKPTMFFKIGGITQNIVNELVN-ELEKIAHENKCENFQF 446
                    5689**********************************************.9***************************.**************** PP

                    .......ETGGGGGGGGHH..HHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEEEETTEEEEEEEEEEE..--TT--THHH CS
  FAD-oxidase_C  99 aqdeaeaealwkaRkaalp..ylrdallkagvavlseDtsvPvsrladlvrdikalldkyglevvlfgHagdgnlhlyilfdladeaeeeraeklv 192
                    a++++e+ +lw+aRk al+  +   ++ + +  v+++D++vP s+++++++++k+ ld++gl+ ++ gH gdgn+h  i++  ++++e+++  k+v
     CCD22341.1 447 AKSDEEKVELWEARKVALWsvLDAGRTTDLHARVWTTDVAVPFSKFPEVIEKTKEELDESGLINAIAGHSGDGNFHSFIIY--RNDEERAKCTKIV 540
                    *******************55455556778999************************************************..5679999999*** PP

                    HHHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT-- CS
  FAD-oxidase_C 193 devvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgkv 250
                     ++v++a+e+ G+++gEHGvG+ k++++ +e g e ++lmr+iK ++DP++i+NP kv
     CCD22341.1 541 SNMVKRAIEAEGTCTGEHGVGIGKRDFVLQELGTEPVDLMRKIKLTIDPNRIMNPDKV 598
                    *******************************************************997 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.95   8.5e+03      44      77 ..      85     119 ..      76     120 .. 0.72
   2 !  122.6   0.0   1.1e-39   9.6e-36       1     138 [.     175     314 ..     175     315 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.95
                    CEEEEEETT.S--EEEEETTTTEEEEETTSBHHHH CS
  FAD_binding_4  44 ggvvldlsr.lnrileideeegtatveaGvtlgdl 77 
                     ++++d ++ ln++++   ++  +t+++  +l dl
     CCD22341.1  85 TTFMIDNEKkLNKLEKSIIKNVEVTAKSTLPLTDL 119
                    57889998889997777767777777777777666 PP

  == domain 2  score: 122.6 bits;  conditional E-value: 1.1e-39
                    EEEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC...SCCEEEEEETT.S--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGG CS
  FAD_binding_4   1 paavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav...atggvvldlsr.lnrileideeegtatveaGvtlgdlvealaakglllglep 92 
                    p+++++p+s+ee++ +l+++ne+++p+++++gG+sl g+ +   a+  v++d+s+ +n+i+++++++  +tv++Gv ++dl+ +la +gl++g++p
     CCD22341.1 175 PKIILFPHSTEEISQILAFCNEYKVPIIPFSGGTSLEGHFLptrANCLVTIDISKyMNNIIKLNQKDLDITVQGGVGWEDLNDYLADYGLMFGCDP 270
                    78999***********************************9764444599*******************************************999 PP

                    GTTCGSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEEE CS
  FAD_binding_4  93 gsgipgtvGGaiatnagGygsekyGlirdnvlglevvladGevvrl 138
                    g g  +t+ Ga+a+  +G+++++yG++++nv +++vvl+dG++v++
     CCD22341.1 271 GPG--ATISGAVANSCSGTNAQRYGTMKENVINMTVVLPDGTIVKT 314
                    988..89*************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4419.33
//
Query:       CCD22342.1  [L=157]
Description: hypothetical protein NDAI_0A01840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1259.06
//
Query:       CCD22343.1  [L=285]
Description: hypothetical protein NDAI_0A01850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-15   57.4  20.1    6.2e-09   36.3   0.1    3.7  4  DUF3602    Protein of unknown function (DUF3602)


Domain annotation for each model (and alignments):
>> DUF3602  Protein of unknown function (DUF3602)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   5.4   1.8e-07    0.0032       7      51 ..      27      71 ..      17      77 .. 0.63
   2 !   36.3   0.1   3.5e-13   6.2e-09       1      66 [.      62     122 ..      62     129 .. 0.85
   3 ?   -2.7   0.1      0.54   9.7e+03      10      60 ..     149     160 ..     135     171 .. 0.47
   4 !   17.0   0.8   3.8e-07    0.0068       6      62 ..     216     268 ..     206     276 .. 0.51

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.8e-07
     DUF3602  7 tkytdgeivr.tgpqgsktdgsttsafstGRGGaGNihssdrerpe 51
                +++ d+++v+ t+++++++++s++ +++ GRGGaGNi +s+ ++p+
  CCD22343.1 27 KVTFDSKMVQnTNTNTNSNSNSNKYKVTFGRGGAGNIITST-SQPK 71
                444455555404444444444444499***********776.7776 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 3.5e-13
     DUF3602   1 NiikdktkytdgeivrtgpqgsktdgsttsafstGRGGaGNihssdrerpe.trkdedvereearrk 66 
                 Nii++++++++    ++  qgs+t+++ +  +stGRGGaGN +++   +p+ tr  +dv+++ ++++
  CCD22343.1  62 NIITSTSQPKP----KIIRQGSETPNILQPIYSTGRGGAGNLKRNV--DPKiTRLAQDVDEDSEEEN 122
                 88998888888....777788888888889*************776..8888********9988776 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.54
     DUF3602  10 tdgeivrtgpqgsktdgsttsafstGRGGaGNihssdrerpetrkdedver 60 
                 t++                                         +ded+ +
  CCD22343.1 149 TTD---------------------------------------DEEDEDFIG 160
                 222.......................................333444433 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 3.8e-07
     DUF3602   6 ktkytdgeivrtgpqgsktdgsttsafstGRGGaGNihssdrerpe.trkdedveree 62 
                 ktk+++    r + +  kt ++   a+  GRGGaGNi  s+++  e ++k+++   ++
  CCD22343.1 216 KTKSNK----RPKLKKVKTIEKVPPAVVIGRGGAGNII-SPSSSSEkEKKLKKKIDNK 268
                 333333....3333444444444459999*********.4533333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2284  (0.127391); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2006.10
//
Query:       CCD22344.1  [L=2152]
Description: hypothetical protein NDAI_0A01860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.8e-167  555.9   0.0   8.2e-167  555.2   0.0    1.4  1  GATase_2         Glutamine amidotransferases class-II
   5.9e-153  509.4   0.0   9.1e-153  508.7   0.0    1.3  1  Glu_synthase     Conserved region in glutamate synthase
     2e-109  365.4   0.0   1.8e-107  359.0   0.0    2.5  2  Glu_syn_central  Glutamate synthase central domain
    9.3e-71  237.4   3.9    1.8e-70  236.4   3.9    1.5  1  GXGXG            GXGXG motif
    1.9e-24   86.4   0.5      2e-23   83.1   0.5    2.4  1  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
      1e-22   80.0   0.1      2e-22   79.1   0.1    1.5  1  Fer4_20          Dihydroprymidine dehydrogenase domain II, 4F
    1.2e-08   35.1   0.0      3e-08   33.7   0.0    1.7  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    1.4e-07   31.9   0.9    7.2e-05   23.3   0.0    3.4  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
      1e-05   25.0   0.4     0.0083   15.4   0.0    3.0  2  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
    1.9e-05   24.1   0.0    4.7e-05   22.9   0.0    1.7  1  Amino_oxidase    Flavin containing amine oxidoreductase
    2.8e-05   23.0   0.1    2.8e-05   23.0   0.1    2.2  3  HI0933_like      HI0933-like protein
    0.00025   20.3   0.0    0.00048   19.3   0.0    1.4  1  FAD_binding_2    FAD binding domain
    0.00061   19.5   0.1     0.0025   17.5   0.0    2.1  2  DAO              FAD dependent oxidoreductase
    0.00075   19.0   0.0     0.0018   17.7   0.0    1.6  1  FAD_oxidored     FAD dependent oxidoreductase
     0.0014   19.1   0.0        1.1    9.7   0.0    2.9  2  NAD_binding_7    Putative NAD(P)-binding
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.026   14.5   0.0    1.6  1  NAD_Gly3P_dh_N   NAD-dependent glycerol-3-phosphate dehydroge
      0.016   14.3   0.3      0.085   11.9   0.0    2.2  2  GIDA             Glucose inhibited division protein A
      0.019   15.5   0.1        0.5   11.0   0.0    3.1  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
       0.02   13.3   0.4        1.9    6.8   0.0    2.9  3  FMO-like         Flavin-binding monooxygenase-like
      0.041   13.1   0.0      0.074   12.3   0.0    1.3  1  FAD_binding_3    FAD binding domain
      0.042   13.4   0.8       0.22   11.1   0.1    2.5  3  IlvN             Acetohydroxy acid isomeroreductase, NADPH-bi
      0.042   14.0   0.0       0.16   12.2   0.0    2.0  1  GATase_6         Glutamine amidotransferase domain
      0.057   12.7   0.2         11    5.2   0.0    2.5  2  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
      0.062   12.6   0.0        3.1    7.1   0.0    2.4  2  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
      0.072   12.3   0.0       0.21   10.8   0.0    1.7  2  Thi4             Thi4 family
        0.1   12.8   0.1       0.29   11.3   0.1    1.8  1  NAD_binding_2    NAD binding domain of 6-phosphogluconate deh
       0.17   11.7   0.0       0.61    9.9   0.0    2.0  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
          2    8.4   6.3         21    5.2   0.1    3.1  3  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin


Domain annotation for each model (and alignments):
>> GATase_2  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  555.2   0.0  1.3e-169  8.2e-167       1     420 []      53     484 ..      53     484 .. 0.93

  Alignments for each domain:
  == domain 1  score: 555.2 bits;  conditional E-value: 1.3e-169
                 -EEEEEE-SSS--BSHHHHHHHHHHHHGGGGS-B-TTSSSBSEEEEEEE--HHHHHHHHHH.TT-----GGG-EEEEEEE-S......SH.......HH CS
    GATase_2   1 CGvgfiaelkgkkshkivekalealenleHRGavgadektGDGaGillqiPdeflrkeake.kgielpeageyavgmlflpk......de.......ek 85 
                 CGvgf+a++kg++shki+++a  +l n++HRGav++d + GDGaGil+ iP+ef+++e+k   +i++pe+g+yavg++f++k      d+       ++
  CCD22344.1  53 CGVGFVANIKGEPSHKIISDAKFLLVNMTHRGAVSTDGN-GDGAGILVGIPHEFMKREFKLdLNIDIPERGKYAVGNVFFQKidnedqDSlkrqekvDA 150
                 ************************************985.*****************998669****************97532221111111111122 PP

                 HHHHHHHHHHHHHHTT-EEEEEEE--B-GGGS-HHHHHH--EEEEEEE...E-TT---HHHHHHHHHHHHHHHGGG.....-BTTBEEEEEESSEEEEE CS
    GATase_2  86 aeeakkileeiveeeglevlgwRevpvdksvlgeaakesePsieqvfv...ekkedlseeelerklyviRkriekeiakkkaekefYicslssrtivYk 181
                  ++ kki+e+ +++ +l+vlgwR+vpvd+++lg++ak++eP+i q ++   + +e+++e+e++++ly++Rk+++++i     e++fY csl ++tivYk
  CCD22344.1 151 LNKNKKIFEDLANSLKLNVLGWRNVPVDTTILGSVAKSREPTILQPMIvplNDTEEFNETEFNTNLYLLRKQASNTIG---IENWFYACSLNNKTIVYK 246
                 345688999************************************9984444555599******************99...89**************** PP

                 ESS-GGGHHHHBHGGGSTT--BSEEEEEE---SSSS--GGGSSS-SSEEEEE--TTHHHHHHHHHHHCTT--BT-HH.HHHTC--S--TTS-HHHHHHH CS
    GATase_2 182 glltseqlkefykdlkdeelesalalvHsRfstntfPsWelaqPlRllaHnGEintlrGnknwmkareaelksellgdelekllPivneegsDsasldn 280
                 g+lt++q+ ++y+dl+++ ++s+lalvHsRfstntfPsW++aqPlR+laHnGEintlrGnknwm++re ++ se+++d+l+kl+Pi++e+gsDsa+ldn
  CCD22344.1 247 GQLTPAQVYSYYPDLTNAYFQSHLALVHSRFSTNTFPSWDRAQPLRWLAHNGEINTLRGNKNWMHSREGSMYSETFKDQLDKLYPIIEEGGSDSAALDN 345
                 *************************************************************************************************** PP

                 HHHHHHHTT.--HHHHHHHHS----TT-GGGTHHHHHHHHHHTTT-----SSEEEEEE-SSEEEEEE-TT--S--EEEEETT--EEEESSTTSS---GG CS
    GATase_2 281 vlellvlsg.rslaealmlliPeawennksldkekkafyeyasalmepWDGPalivftdGkvvgavLDRnGLRPaRylvtkddlvvlasEvGvldleee 378
                 vlell+++g  sl+ea+m+l+Pea++  +++d+++ka+y++a++lmepWDGPal++ftdG+++ga LDRnGLRP+Ry++t+dd+v++asEvGv++++++
  CCD22344.1 346 VLELLTTNGnLSLPEAIMMLVPEAYH--EDMDSDLKAWYDWAACLMEPWDGPALLTFTDGRYCGAALDRNGLRPCRYYITSDDRVICASEVGVIPIDNA 442
                 *********88**************6..679******************************************************************** PP

                 GEEEEEE--TT-EEEEETTTTEEEEHHHHHHHHHTTS-HHHH CS
    GATase_2 379 evvekgrlqPGrmllvdleegriledeeikkkiaskkpykew 420
                  v+ekg+l+PG+++l d+e+g++++ +++k +ia+kk++k+w
  CCD22344.1 443 LVIEKGKLKPGDLFLADTETGELVDTKKLKLQIAKKKDFKSW 484
                 ****************************************99 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  508.7   0.0  1.4e-155  9.1e-153       1     368 []     876    1246 ..     876    1246 .. 0.99

  Alignments for each domain:
  == domain 1  score: 508.7 bits;  conditional E-value: 1.4e-155
                    -SS-HHHHHHHHHHHHH---HHHHHHHHHHHTS.-S-SGGGGEEE--SS--.--GGGS--HHHHHTTEE---B-TTTS-HHHHHHHHHHHHHHT- CS
  Glu_synthase    1 krneievikllqkavqveskesidkyrekleerevlkakrdlleldaaeealikleevepalkikkriltsamSyGalseeahealakamnrlgt 95  
                    + n++++i++lq++v+++++ s++ y +k +e+++ +++r lleld+++++ i++e+vep+++i++r++ +amSyG++s+eah++la+amnrlg+
    CCD22344.1  876 HVNDPTAIASLQDSVRNKNDASWELYVKKEMEAIKDCTLRGLLELDYDNSTAIPIEQVEPWTEIARRFASGAMSYGSISMEAHSTLAIAMNRLGA 970 
                    56889999*************************************************************************************** PP

                    B-EETTS---GGGGS-----.....SEEEE-TT-TT--HHHHHH-SEEEEE---TTSTTS--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-S CS
  Glu_synthase   96 ksntGEGGedeerlktakdv.....aikQvasgrFGvteeyLnnakaleikiaQGakpgeGgqlpgeKvseeiakiRkikpgvdliSPaphhdiy 185 
                    ksn+GEGGed+er     +      aikQvas+rFGvt++yL++a++++ikiaQGakpgeGg+lp++Kvs+eiak+R+++p+v+liSP+phhdiy
    CCD22344.1  971 KSNCGEGGEDAERSIVSPNGdtmrsAIKQVASARFGVTSYYLSDADEIQIKIAQGAKPGEGGELPAHKVSKEIAKTRHSTPNVGLISPPPHHDIY 1065
                    *************998888888999********************************************************************** PP

                    SHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEE CS
  Glu_synthase  186 siedlaqliedLkevnkeakvsvKlvaeagvetiaagvakanadiilidGleGGTGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliad 280 
                    siedl+qli+dLk++n++a +svKlv+e gv+++a+gvaka+ad+ili+ ++GGTGA++++s+k+aGlP+el+lae++qtl+ ++lr++v++++d
    CCD22344.1 1066 SIEDLKQLIYDLKCANPRAGISVKLVSEVGVGIVASGVAKAKADHILISSHDGGTGAARWTSVKYAGLPWELGLAETHQTLVLNDLRRNVVVQTD 1160
                    *********************************************************************************************** PP

                    SS--SHHHHHHHHHHT-SEEE-SHHHHHHTT--S---GGGT--TTSSS---HHHH..TT----HHHHHHHHHHHHHHHHHHHHHHT-S CS
  Glu_synthase  281 GglktgadvvkalalGAdavgigtaalialgCimarvChtntCpvGvatqdpeLrkrlkveekaervvnyikalaeevrellaalgin 368 
                    G+l+tg d+++a++lGA++++++t++li +gC+m+r+Ch+n+C+vG+atqdp+Lr  +k+++++e+v+n++++l +++r+++a+lg++
    CCD22344.1 1161 GQLRTGFDLAVAILLGAESFTLATIPLIVMGCVMLRRCHLNSCAVGIATQDPYLR--SKFQGQPEHVINFFYYLIQDLRMIMAKLGFR 1246
                    *******************************************************..*****************************85 PP

>> Glu_syn_central  Glutamate synthase central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  359.0   0.0  2.9e-110  1.8e-107       4     279 .]     524     814 ..     521     814 .. 0.95
   2 ?    3.8   0.0     0.054        35     164     263 ..    1128    1247 ..    1099    1254 .. 0.64

  Alignments for each domain:
  == domain 1  score: 359.0 bits;  conditional E-value: 2.9e-110
                      HHTT--HHHHHHTHHHHHHHSS--EE-S---S--TTT-SS---GGGGEEE----SSS----TTTTGGG-B--EEES----SSS--GGGG-EEEE CS
  Glu_syn_central   4 kafgyteedlelllepmakegkeaigsmGdDtplavLsekprllydYFkqlfAqVTNPpiDpiREelvmsletllGkegnlleeeeeqakrlkl 97 
                       a gyt e+++lll+pma +gkea+g+mG+D+pla+L+++p llydYF+qlfAqVTNPpiDpiRE++vmsle+++G++gnll+ +++q++rl l
       CCD22344.1 524 LANGYTFEQVSLLLTPMALTGKEALGAMGNDSPLACLNRDPVLLYDYFRQLFAQVTNPPIDPIREANVMSLECFVGPQGNLLDINQSQCERLLL 617
                      578******************************************************************************************* PP

                      SSSB--HHHHHHH.....HHSSS-EEEEESEE.......SHHHHHHHHHHHHHHHHHTT-SEEEEESS--STTEEE--HHHHHHHHHHHHHHTT CS
  Glu_syn_central  98 esPiLteeeleklkkl.kekkefkaktlditfeae....aleealerlceeaeeavregaeilvLsDrkvseervpipslLavgavhhhLvrkg 186
                      +sPiL  ee+++lk++ k+ +++++ ++ditf+++    ++++++er+++ea++a+++g +i+ +sDrk++e+rv i+sl+av+++hhhL+r++
       CCD22344.1 618 RSPILFWEEFQALKQIdKAYPSWSVGEIDITFSKSagllGYTATIERITKEASAAIEAGNKIIFISDRKLGEDRVSISSLIAVSTIHHHLIRNR 711
                      ****************877899**********87766655****************************************************** PP

                      -GGG-EEEEEESS--SHHHHHHHHHTT-SEEEEHHHHHHHHHHHTTTS-..........----HHHHHHHHHHHHHHHHHHHTT--BHHHHHHS CS
  Glu_syn_central 187 lrtkvslvvesgearevhhfavllgyGadavnPylaletieklveegal..........aeeeleknyrkavekGllKimskmGistlqSYkga 270
                      +r++++l++e++ea+e+hhf++llgyG+d + Pyl++et+ ++ +eg +          ++++l +ny++av++G++K+mskmGistl+SYkga
       CCD22344.1 712 QRSQTALILETAEAKEIHHFCTLLGYGCDGIFPYLVMETLVRMNREGLIrnvddddhntDDKTLLSNYKHAVDAGIMKVMSKMGISTLASYKGA 805
                      **********************************************9666667665543444444***************************** PP

                      --EEESSB- CS
  Glu_syn_central 271 qifeavGls 279
                      qifea+Gl+
       CCD22344.1 806 QIFEALGLD 814
                      *******95 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.054
                       TTEEE--HHHHHHHHHHHHHHTT-GGG-EEEEEESS--SHHHHHHHHHTT-S....EEEEHHHHHHHHHHHTTT.....S-........... CS
  Glu_syn_central  164 eervpipslLavgavhhhLvrkglrtkvslvvesgearevhhfavllgyGad....avnPylaletieklveeg.....al........... 235 
                        + + +p  L ++  h++Lv ++lr++v +v   g++r+  ++av + +Ga+    a  P +++ ++  + ++      a+           
       CCD22344.1 1128 VKYAGLPWELGLAETHQTLVLNDLRRNV-VVQTDGQLRTGFDLAVAILLGAEsftlATIPLIVMGCV--MLRRChlnscAVgiatqdpylrs 1216
                       5667788889999************997.45566*****************8333345566666666..22222122231123333333333 PP

                       ...----HHHHHHHHHHHHHHHHHHHTT--B CS
  Glu_syn_central  236 ...aeeeleknyrkavekGllKimskmGist 263 
                           + e+  n+   + + l  im+k+G  t
       CCD22344.1 1217 kfqGQPEHVINFFYYLIQDLRMIMAKLGFRT 1247
                       3222222236666666666777777777666 PP

>> GXGXG  GXGXG motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.4   3.9   2.9e-73   1.8e-70       2     188 ..    1326    1515 ..    1325    1517 .. 0.97

  Alignments for each domain:
  == domain 1  score: 236.4 bits;  conditional E-value: 2.9e-73
                  EE-TT--STTHHHHHHHHHHHTTT---.-EEEEEEEEEE-TTTTTT--TTEEEEEEEEE-STTTTT-ESSEEEEE--TT-SS-GGGSB-S-SSTTTT CS
       GXGXG    2 eirnldrsvgtilsneiakrygeeglpedtikiklkGsaGqslgaflakGltleleGdandyvGkglsgGkivikpskeskfkaeeniivGnvvlyg 98  
                  +i n+dr++g++ls++++kr+ge+glp+dti ++++GsaGqs+gafla G+t+ l GdandyvGkglsgG iv++p+k skfk++en+ivGn++lyg
  CCD22344.1 1326 QIINTDRALGATLSYRVSKRFGENGLPQDTIVVNIEGSAGQSFGAFLAPGITFILDGDANDYVGKGLSGGIIVVRPPKGSKFKSDENVIVGNTCLYG 1422
                  689********************************************************************************************** PP

                  --SEEEEESSB--SSTTTT-SS-EEEESEB.-SSTTTT-EEEEEEE-S-B.-SSBTTT--EEEEEEE.-SSSTHHHHB-TTT-EEEES-SHHH CS
       GXGXG   99 atgGklfirgkageRfavrnsgatavvegv.gdhgceYmtGGvvvvLgkt.grnfaaGmsgGiayvl.dedekfekklnkelvelekvedeee 188 
                  at+G++fi+g +geRf+vrnsgat+vve + g+++ eYmtGG+ +vL+++ + n  +G +gGiay l +  e f++k+nk++vele+++d+ e
  CCD22344.1 1423 ATSGTVFISGGVGERFGVRNSGATVVVERIkGNNAFEYMTGGRAIVLSQMeSLNAFSGATGGIAYCLvSDYEAFTTKINKDTVELENLQDPVE 1515
                  ************************************************9868899************777778**************999765 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.5   3.1e-26     2e-23       1     294 []    1791    2111 ..    1791    2111 .. 0.70

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 3.1e-26
                   CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHHHHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEECTCE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2    1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeiasevvkklnqg.ielllgeevvkidpgkkkvklekkkegde 95  
                   k+++viG+GpAG+a+a +l++ag++vt++e+ + c   g ll + + +++ +++i+ + ++ l+++ ie++ +   ++i  gk ++  e+++    
   CCD22344.1 1791 KRIAVIGSGPAGMACADQLNKAGHNVTVYERADRC---GGLLMYGIPNMKLEKSIVDRRFDILRAEgIEFICN---TEI--GK-DISMEELQ---- 1873
                   589**************************877777...34555889999999998885555566555999999...555..44.56664444.... PP

                   EEEEESEEEE---E.EE-BCTCTTC.............TTBEECCSECHHHHHHCCSS-T........SEEEEES-SHHHHHHHHHHHHHT-.... CS
                   xxxxxxxxxxxxxx.xxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx.... RF
  Pyr_redox_2   96 ekiaydklvlAtGs.sprdlgipGv............aenvgklvrtldsaealklkllp........krivvvGgGyiGvElAaalaklgk.... 166 
                      +yd++v A+Gs  prdl+i+G             ++n+  l    ++         +        k++vv+GgG +G ++ ++  + g+    
   CCD22344.1 1874 --NEYDAVVYAIGStIPRDLNIKGRdlknidfamellEDNTKAL--LNNDL--------EtirkevegKKVVVIGGGDTGNDCLGTSVRHGAksvi 1957
                   ..48*********967*********8666555555533333222..22333........144444446******************9999987777 PP

                   ...........................EEEEEESSSSSSTTS-HHHHH...HHHHHHHHT..TEEEEESCEEEEEEETTE...EEEEEETTSCEEE CS
                   ...........................xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx..xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxx RF
  Pyr_redox_2  167 ...........................evtlveardrllraldkelsa...aleealeke..Gvevklgtsvkeidgnge...klevvledgeeid 227 
                                              +    +  +++ + ++ + ++   +++e + +e   v+     +v e ++ ++   ++  + +++e+++
   CCD22344.1 1958 nfellpcppnerardnpwpqwprimrvD----YGHSEVKEHYGNDPREyciFAKEFIGNEnnEVKAIKTVRV-EWKKSESgvwQMVEIPNTEETFE 2048
                   7777777777777777777777544330....3333333444433333110333333333013444333333.444444454433358888888** PP

                   ESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSBES.STTEEE-GGGCTECCSS--HHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  228 adlvvvavGvrpstelleeklglelderggivvdeflrtn.vpgiyaiGDvaggkggpelaqaAvqqG 294 
                   adlv+++ G+     l+ e+++++ +++g i +d         ++ya+GD+    +g  l++ A+q+G
   CCD22344.1 2049 ADLVLLSMGFVGPE-LI-EDANVTKTSKGTIMTDNDASYHvAGNVYAAGDCR---RGQSLIVWAIQEG 2111
                   **********9985.65.9*****************99886899********...8888888888887 PP

>> Fer4_20  Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.1   3.1e-25     2e-22       1     111 [.    1668    1777 ..    1668    1779 .. 0.94

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 3.1e-25
                  HTTS-S-SB----HHHHHHHHTT----TT-HHHH..CSTT---HHHHHHHHHTT-HHHHHHHHHHH-S-HHHHHHHS-GGGTGCCS-GGGTTB.--- CS
     Fer4_20    1 raknfkevalglteeealeeAsRClqCkkapcvk..gCPveidipefikkiaegnleeaakiiketnslpavcgrvCpqeelCegaCvlekkgkepv 95  
                  r+k++ke+ + +++++a+ + +RC++C ++ c++  gCP+++ ip+f + + +++++ a++ + etn+ p+ +grvCp    CegaC+l+ ++ +pv
  CCD22344.1 1668 RVKDWKEFVKPISKKDAKYQTARCMDCGTPFCSAdtGCPLSNVIPKFNELVFKNQWKLALDKLLETNNYPEFTGRVCPAP--CEGACTLGISE-NPV 1761
                  5789****************************85449*****************************************99..*******9777.9** PP

                  -HHHHHHHHHHHHHHT CS
     Fer4_20   96 aigklerfvadaaree 111 
                   i+++er ++d   +e
  CCD22344.1 1762 GIKSIERIIIDNGFKE 1777
                  ***********87766 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   4.8e-11     3e-08       1      34 [.    1795    1828 ..    1795    1847 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 4.8e-11
                     EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGG CS
  NAD_binding_8    1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGr 34  
                     ++G+G +G+++A  L kag++v+++e++dr+GG 
     CCD22344.1 1795 VIGSGPAGMACADQLNKAGHNVTVYERADRCGGL 1828
                     8*******************************95 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.1e-07   7.2e-05       1      63 [.    1792    1863 ..    1792    1870 .. 0.81
   2 ?    5.3   0.1     0.045        29       1      24 [.    1931    1954 ..    1931    1963 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.1e-07
                  EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS.........TTSSHHHHHHHHHHHHHTTEEEECSEEE CS
   Pyr_redox    1 kvvvvGgGyiglElAgalaelgkkVtvversdkll.........rllDeeaskilqeklekngievllntkv 63  
                  +++v+G+G  g+ +A  l++ g++Vtv er+d+            +l++ + ++  + l+++gie++ nt++
  CCD22344.1 1792 RIAVIGSGPAGMACADQLNKAGHNVTVYERADRCGgllmygipnMKLEKSIVDRRFDILRAEGIEFICNTEI 1863
                  79******************************9764323433333567777777788899999999999986 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.045
                  EEEEECSSHHHHHHHHHHHHTTSE CS
   Pyr_redox    1 kvvvvGgGyiglElAgalaelgkk 24  
                  kvvv+GgG++g ++ g+  ++g+k
  CCD22344.1 1931 KVVVIGGGDTGNDCLGTSVRHGAK 1954
                  79*********9998888777754 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.3e-05    0.0083       2      58 ..    1795    1850 ..    1794    1894 .. 0.74
   2 !    6.4   0.1    0.0074       4.8     160     189 ..    1925    1954 ..    1866    1959 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
  Pyr_redox_3    2 IiGaGPaGlaaaielkkagledylilEkgnignsiyrypkemtfispsftsekleip 58  
                   +iG GPaG+a+a +l+kag  ++++ E++     +  y   +  + +s   ++++i 
   CCD22344.1 1795 VIGSGPAGMACADQLNKAGH-NVTVYERADRCGGLLMYGIPNMKLEKSIVDRRFDIL 1850
                   8******************9.8******96665666665555555666666666654 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0074
  Pyr_redox_3  160 hkyagqkvvViGgknSavDaAlelvrkgae 189 
                   ++++g+kvvViGg++++ D     vr+ga+
   CCD22344.1 1925 KEVEGKKVVVIGGGDTGNDCLGTSVRHGAK 1954
                   57899**************99999999986 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   7.3e-08   4.7e-05       2      29 ..    1801    1828 ..    1800    1831 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 7.3e-08
                     HHHHHHHHHHHTTEEEEEEESSSSSBTT CS
  Amino_oxidase    2 aGLaaArqLlsaGfdVtvlEardrvGGR 29  
                     aG+a+A qL  aG++Vtv+E  dr GG 
     CCD22344.1 1801 AGMACADQLNKAGHNVTVYERADRCGGL 1828
                     9**************************6 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.5   9.7e+02     229     341 ..    1470    1584 ..    1448    1593 .. 0.65
   2 !   23.0   0.1   4.4e-08   2.8e-05       2      36 ..    1792    1826 ..    1791    1832 .. 0.92
   3 ?   -3.6   0.1       5.1   3.3e+03       2      12 ..    1931    1941 ..    1930    1955 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
                   EEEEEEE-SSEEESHHHHHHTTT-......-TT--EEEECSTT.S-...HHHHHHHHHHHTTTSBHHHHHTT..TS-HHHHHHHHHC..TTT-TTB CS
  HI0933_like  229 ekgellfThrGlsGpailqlSsyvakalekkeeetleidllPd.ldaeelkaalekekekeskkslknalae..llpkrlvevlleealieeedkk 321 
                    ++e l +  G  G++++ l s  +   +k +++t+e++ l d ++ + +k+ ++++ + ++++  +++la+  +  k++v+v+ ++ +    dk+
   CCD22344.1 1470 SQMESLNAFSGATGGIAYCLVSDYEAFTTKINKDTVELENLQDpVEIAFVKNLIQEHFHYTKSELAEKILANfnHYLKNFVKVIPTDYKK-VLDKE 1564
                   566666667788888888877777555557888888887666514444555555555544443333444443113446677777776555.67888 PP

                   GGG--HHHHHHHHHHHHSEE CS
  HI0933_like  322 laqlskkelkklaealkalt 341 
                   +a+ +k++ ++ a++lk+++
   CCD22344.1 1565 AADKAKEKATATANYLKNFK 1584
                   99999999999999999876 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 4.4e-08
                   SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like    2 dviviGgGaAGlmaAisaakrgkrVlllekakklg 36  
                   +++viG G+AG+ +A +++k+g++V+++e+a++ g
   CCD22344.1 1792 RIAVIGSGPAGMACADQLNKAGHNVTVYERADRCG 1826
                   689***************************99887 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 5.1
                   SEEEE--SHHH CS
  HI0933_like    2 dviviGgGaAG 12  
                   +v+viGgG  G
   CCD22344.1 1931 KVVVIGGGDTG 1941
                   89******988 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.5e-07   0.00048       2      36 ..    1793    1827 ..    1792    1851 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7.5e-07
                     EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS CS
  FAD_binding_2    2 viViGsGlAGLaAAleaaeaGlkvavvekeqefgg 36  
                     + ViGsG AG+a+A ++++aG++v+v e +++ gg
     CCD22344.1 1793 IAVIGSGPAGMACADQLNKAGHNVTVYERADRCGG 1827
                     68**************************9998665 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.9e-06    0.0025       2      33 ..    1793    1826 ..    1792    1865 .. 0.93
   2 ?   -2.7   0.0       5.1   3.3e+03     157     207 ..    2013    2064 ..    1993    2096 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.9e-06
                  EEEECTSHHHHHHHHHHHHTT..EEEEESSSSTT CS
         DAO    2 vviiGGGiiGlstAyeLarrg..Vtllekgdiag 33  
                  +++iG+G +G+++A +L ++g  Vt++e++d++g
  CCD22344.1 1793 IAVIGSGPAGMACADQLNKAGhnVTVYERADRCG 1826
                  9****************99999********9888 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.1
                  HHTT-EEEESECEEEEEEEETCEEEEE...EECTEEEEEEEEEEE--GGGHH.HH CS
         DAO  157 ealGveilegtevtgleeedgkvwgve...rttpgendaadavVnaaGawsd.ll 207 
                  e++ v+ ++  +v+  ++ + +vw+     +t  +e+++ad v +++G     l+
  CCD22344.1 2013 ENNEVKAIKTVRVE-WKKSESGVWQMVeipNT--EETFEADLVLLSMGFVGPeLI 2064
                  44455555544443.33444677888655433..44456799*****95433333 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   2.8e-06    0.0018       2      43 ..    1793    1834 ..    1792    1861 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.8e-06
  FAD_oxidored    2 vvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglv 43  
                    + V+G+gpaG+a+A +  +aG +v + e+ +++GGll  g+ 
    CCD22344.1 1793 IAVIGSGPAGMACADQLNKAGHNVTVYERADRCGGLLMYGIP 1834
                    78**********************************988774 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0018       1.1       6      39 ..    1789    1822 ..    1788    1887 .. 0.76
   2 ?    5.9   0.0     0.027        17       5      32 ..    1927    1954 ..    1924    1977 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0018
  NAD_binding_7    6 kgkkvlvvGgGevAarkvrklleagakvtvvape 39  
                     ++k++ v+G G+ ++  + +l +ag +vtv+  +
     CCD22344.1 1789 TDKRIAVIGSGPAGMACADQLNKAGHNVTVYERA 1822
                     689***************************9877 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.027
  NAD_binding_7    5 lkgkkvlvvGgGevAarkvrklleagak 32  
                     ++gkkv+v+GgG+ +   + + ++ gak
     CCD22344.1 1927 VEGKKVVVIGGGDTGNDCLGTSVRHGAK 1954
                     79***********999888888887777 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.1e-05     0.026       2      83 ..    1793    1889 ..    1792    1941 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.1e-05
                      EEEE--SHHHHHHHHHHHTTT--EEEE-S-H.............HHHHHHHHHSSBTTTBTT---..-TTEEEES-HHHHHTT--EEEE---H CS
  NAD_Gly3P_dh_N    2 iavlGaGswGtalAkvlaenghevrlwvree.............elieeineehenvkyLpgikl..penlvattdlaealkgadiivlvvPs 79  
                      iav+G+G  G a A  l+++gh+v+++ r +             +l ++i +++ +    +gi++  ++++     ++e  ++ d +v ++ s
      CCD22344.1 1793 IAVIGSGPAGMACADQLNKAGHNVTVYERADrcggllmygipnmKLEKSIVDRRFDILRAEGIEFicNTEIGKDISMEELQNEYDAVVYAIGS 1885
                      9****************************9999999999999988888999999998888888751144455555578888888888888887 PP

                      HHHH CS
  NAD_Gly3P_dh_N   80 qalr 83  
                       + r
      CCD22344.1 1886 TIPR 1889
                      7655 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013     0.085       2      37 ..    1793    1827 ..    1792    1888 .. 0.84
   2 ?   -0.7   0.1       0.9   5.7e+02       1      25 [.    1931    1955 ..    1931    1962 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                  EEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT- CS
        GIDA    2 viViGgGhAGceAAlaaarlGakvlLithkldtiae 37  
                  + ViG G AG+++A ++ ++G++v+ + ++ d+++ 
  CCD22344.1 1793 IAVIGSGPAGMACADQLNKAGHNVTVY-ERADRCGG 1827
                  78***********************99.66666665 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.9
                  CEEEE-SSHHHHHHHHHHHHTT--E CS
        GIDA    1 dviViGgGhAGceAAlaaarlGakv 25  
                  +v+ViGgG  G  +  ++ r Gak 
  CCD22344.1 1931 KVVVIGGGDTGNDCLGTSVRHGAKS 1955
                  69*********99988888888875 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00079       0.5       1      34 [.    1792    1821 ..    1792    1825 .. 0.90
   2 ?    0.3   0.1       1.7   1.1e+03       1      27 [.    1931    1955 ..    1931    1960 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00079
                     EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEES CS
  F420_oxidored    1 kigiiGaGnmgealasgllaagaqpheivvansr 34  
                     +i++iG+G  g a a +l +ag   h+++v  +r
     CCD22344.1 1792 RIAVIGSGPAGMACADQLNKAG---HNVTVY-ER 1821
                     79********************...***965.65 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.7
                     EEEEETTSHHHHHHHHHHHHTTS-GGC CS
  F420_oxidored    1 kigiiGaGnmgealasgllaagaqphe 27  
                     k+ +iG+G+ g   +   +++g  +++
     CCD22344.1 1931 KVVVIGGGDTGNDCLGTSVRHG--AKS 1955
                     6899***********9999999..444 PP

>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.13        84     182     251 ..    1087    1156 ..    1060    1171 .. 0.76
   2 ?    6.8   0.0     0.003       1.9       2      41 ..    1791    1830 ..    1790    1843 .. 0.93
   3 ?    0.9   0.1      0.19   1.2e+02     181     209 ..    1927    1956 ..    1920    1959 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.13
    FMO-like  182 kgkrvlviGlGnsggdiavelsrtaeqvllstrsGswvlsr...vsdsGypwdmllvtrfksllknilptals 251 
                  + k v  +G+G  ++ +a     +a+++l+s++ G+   +r   v   G pw++ l+   ++l+ n l ++++
  CCD22344.1 1087 SVKLVSEVGVGIVASGVAK---AKADHILISSHDGGTGAARwtsVKYAGLPWELGLAETHQTLVLNDLRRNVV 1156
                  5566667788877777774...5799*******99887777322566899*************9999998876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.003
    FMO-like    2 kkvaviGaGvsGlasikccleegleptcfersddiGGlwr 41  
                  k++aviG+G +G+a      + g + t +er+d  GGl  
  CCD22344.1 1791 KRIAVIGSGPAGMACADQLNKAGHNVTVYERADRCGGLLM 1830
                  9************************************975 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.19
    FMO-like  181 fkgkrvlviGlGnsggd.iavelsrtaeqv 209 
                   +gk+v+viG G++g d + + + + a+ v
  CCD22344.1 1927 VEGKKVVVIGGGDTGNDcLGTSVRHGAKSV 1956
                  689*************94456677777766 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011     0.074       4      33 ..    1793    1822 ..    1790    1826 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
                     EEEE--SHHHHHHHHHHHHTTHHEEEEESS CS
  FAD_binding_3    4 VlIVGaGpaGlmlallLseaGvrvvlvekr 33  
                     ++++G+GpaG+  a  L +aG +v++ e+ 
     CCD22344.1 1793 IAVIGSGPAGMACADQLNKAGHNVTVYERA 1822
                     68***********************99986 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.7   1.8e+03      39      75 ..     337     373 ..     317     378 .. 0.83
   2 ?   11.1   0.1   0.00034      0.22       4      36 ..    1790    1822 ..    1787    1827 .. 0.91
   3 ?   -2.2   0.1       4.2   2.7e+03       2      17 ..    1927    1942 ..    1926    1945 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.7
                 HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHHHH CS
        IlvN  39 ksvkkAkeegfevltvaeavkkadvvmiliPDelqke 75 
                  s + A ++ +e lt++   +  + +m+l+P+ ++++
  CCD22344.1 337 GSDSAALDNVLELLTTNGNLSLPEAIMMLVPEAYHED 373
                 46677888889999999999999*********99987 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00034
                  TS-EEEES-SHHHHHHHHHHHHTT--EEEEE-T CS
        IlvN    4 gkkiaviGyGsqGhaqalnlrdsgldvvvglre 36  
                  +k+iaviG G  G a a +l  +g +v+v  r+
  CCD22344.1 1790 DKRIAVIGSGPAGMACADQLNKAGHNVTVYERA 1822
                  89*************************997766 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.2
                  HHTS-EEEES-SHHHH CS
        IlvN    2 lkgkkiaviGyGsqGh 17  
                  ++gkk++viG G  G+
  CCD22344.1 1927 VEGKKVVVIGGGDTGN 1942
                  589*******998885 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00025      0.16       9      53 ..     265     303 ..     259     347 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00025
    GATase_6   9 lvedevalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiyny 53 
                 ++++++al+H R +++  +  ++aqP+       +l+hNGei + 
  CCD22344.1 265 YFQSHLALVHSRFSTNTFPSWDRAQPL------RWLAHNGEINTL 303
                 78999**********************......89*******875 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.018        11      30      59 ..    1792    1821 ..    1785    1826 .. 0.90
   2 ?    4.7   0.1     0.025        16      25      53 ..    1926    1954 ..    1920    1961 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.018
                   EEEEESTSHHHHHHHHHHHHTT-EEEEEES CS
  AlaDh_PNT_C   30 kvlviGgGvaGlqAiatakglgakVtvlDv 59  
                   ++ viG G aG++ +   ++ g +Vtv++ 
   CCD22344.1 1792 RIAVIGSGPAGMACADQLNKAGHNVTVYER 1821
                   799************************986 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.025
                   CB---EEEEESTSHHHHHHHHHHHHTT-E CS
  AlaDh_PNT_C   25 gvepakvlviGgGvaGlqAiatakglgak 53  
                   +ve  kv+viGgG  G   + t+++ gak
   CCD22344.1 1926 EVEGKKVVVIGGGDTGNDCLGTSVRHGAK 1954
                   57789********************9997 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0049       3.1      35      69 ..    1789    1823 ..    1771    1840 .. 0.87
   2 ?    2.7   0.0      0.11        71      25      52 ..    1918    1945 ..    1898    1961 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0049
                    TTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSH CS
  2-Hacid_dh_C   35 sgktvGiiGlGrIGqavakrlkafgmkviaydrsk 69  
                    ++k++++iG G  G a a+ l++ g +v++y+r  
    CCD22344.1 1789 TDKRIAVIGSGPAGMACADQLNKAGHNVTVYERAD 1823
                    689****************************9975 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
                    TTCCGSBS-GTTSEEEEES-SHHHHHHH CS
  2-Hacid_dh_C   25 sekallgkelsgktvGiiGlGrIGqava 52  
                    ++ ++  ke++gk+v +iG G+ G+   
    CCD22344.1 1918 NDLETIRKEVEGKKVVVIGGGDTGNDCL 1945
                    56677889***************98766 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00033      0.21      19      60 ..    1792    1832 ..    1787    1862 .. 0.78
   2 ?   -3.3   0.0       6.7   4.3e+03       2      29 ..    1913    1941 ..    1912    1945 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00033
                  EEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTT CS
        Thi4   19 DvvivGaGssGLtaayylakkpdlkvailersvspGGGawlG 60  
                   ++++G+G++G+++a  l k+ + +v++ er    GG    G
  CCD22344.1 1792 RIAVIGSGPAGMACADQLNKA-GHNVTVYERADRCGGLLMYG 1832
                  589******************.*********99988866555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.7
                  HHHHHHHHHHHHHHTE.EEEEEE--SHHH CS
        Thi4    2 raiveryfedllkyae.sDvvivGaGssG 29  
                  +a++++ +e + k +e   vv++G+G +G
  CCD22344.1 1913 KALLNNDLETIRKEVEgKKVVVIGGGDTG 1941
                  7777788888877776357999****998 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00046      0.29       1      31 [.    1792    1822 ..    1792    1844 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00046
                     EEEEE--SHHHHHHHHHHHHTT-EEEEE-SS CS
  NAD_binding_2    1 kigfiGlGvMGsnmalnllkagykvavynrt 31  
                     +i++iG G  G+  a +l kag++v+vy+r 
     CCD22344.1 1792 RIAVIGSGPAGMACADQLNKAGHNVTVYERA 1822
                     59**************************997 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00095      0.61       2      33 ..    1793    1824 ..    1792    1855 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00095
                  EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HH CS
     3HCDH_N    2 vaviGaGtmGagiaavfasagleVvlvdisee 33  
                  +aviG+G  G   a ++ +ag++V++++++++
  CCD22344.1 1793 IAVIGSGPAGMACADQLNKAGHNVTVYERADR 1824
                  9**************************99765 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       6.9   4.4e+03      42      69 ..    1440    1467 ..    1429    1531 .. 0.60
   2 ?    5.2   0.1     0.032        21      23      74 ..    1790    1840 ..    1785    1906 .. 0.72
   3 ?    4.5   1.0     0.052        33      21      51 ..    1927    1957 ..    1913    1964 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6.9
                     HHHCT-EEEEE-S-HHHHHHHHCTT-EE CS
  AdoHcyase_NAD   42 lkglGarvivtevdPicalqaameGfev 69  
                     +++ Ga v+v  +   +a+  +  G  +
     CCD22344.1 1440 VRNSGATVVVERIKGNNAFEYMTGGRAI 1467
                     5666666666666666665543333322 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.032
                     TSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHH CS
  AdoHcyase_NAD   23 GkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtlee 74  
                      k + v+G G  G  ca+ l+++G  v+v e    c    +m G   ++le+
     CCD22344.1 1790 DKRIAVIGSGPAGMACADQLNKAGHNVTVYERADRCG-GLLMYGIPNMKLEK 1840
                     58899************************98654443.23555655555555 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.052
                     -TTSEEEEE--SHHHHHHHHHHHHCT-EEEE CS
  AdoHcyase_NAD   21 laGkvavvaGyGdvGkGcaaslkglGarviv 51  
                     + Gk++vv+G Gd G  c  +   +Ga+ ++
     CCD22344.1 1927 VEGKKVVVIGGGDTGNDCLGTSVRHGAKSVI 1957
                     67****************8877777887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 1.30u 0.35s 00:00:01.65 Elapsed: 00:00:00.50
# Mc/sec: 12983.90
//
Query:       CCD22345.1  [L=177]
Description: hypothetical protein NDAI_0A01870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.051   13.5   0.0      0.092   12.7   0.0    1.4  1  Caf4      CCR4-associated factor 4
      0.052   12.8   0.1       0.41    9.9   0.0    2.0  2  DUF2357   Domain of unknown function (DUF2357)
      0.068   13.2   0.0       0.12   12.4   0.0    1.3  1  FixH      FixH


Domain annotation for each model (and alignments):
>> Caf4  CCR4-associated factor 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.5e-05     0.092      28      60 .]      57      89 ..      51      89 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
        Caf4 28 DeeryPLPidaakkqLPsLfeGfkatvsivkqk 60
                 e+ y +  d  +++LPsL e f+  +  +k+k
  CCD22345.1 57 YEQNYKVIYDGHEDDLPSLIETFRNHIKRIKKK 89
                589999999******************999986 PP

>> DUF2357  Domain of unknown function (DUF2357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.037   2.2e+02      37      64 ..      56      83 ..      52     102 .. 0.69
   2 ?    9.9   0.0   6.9e-05      0.41     151     173 ..     154     176 ..     129     177 .] 0.72

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.037
     DUF2357 37 dykedykalldeiddeyaelifellkkt 64
                +y+++yk ++d  +d  ++li  +++ +
  CCD22345.1 56 QYEQNYKVIYDGHEDDLPSLIETFRNHI 83
                7999999999997777777765554443 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 6.9e-05
     DUF2357 151 rvrqekkeltvDTpENRFvKyvL 173
                 +      e+  DTpENR +K++L
  CCD22345.1 154 KADVIDVEVDSDTPENRHLKFLL 176
                 55555667788**********99 PP

>> FixH  FixH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.9e-05      0.12      26     107 ..      25     107 ..      17     109 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
        FixH  26 mlylAvstkdglvvddyYkkGkainqelarakaaqalglsadvalde.geltitlrdaagkpveaaaltlslshptdagkDkk 107
                 +  +++++k++l   ++Y +G  +nq+l +++ +q+ ++  d + d+  +l  t+r++  + +++++ ++s+s p +++ Dk+
  CCD22345.1  25 FSNFSYNNKPTLCISSSYSQGFIWNQDLFATQYEQNYKVIYDGHEDDlPSLIETFRNHIKRIKKKHERHISFSSPFEDESDKD 107
                 56689*********************************999999999555555555555666999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1317.60
//
Query:       CCD22346.1  [L=503]
Description: hypothetical protein NDAI_0A01880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-85  284.8   0.1      9e-85  283.8   0.1    1.5  1  Nop           snoRNA binding domain, fibrillarin
      4e-21   75.2   0.3    1.3e-20   73.5   0.3    2.0  1  NOP5NT        NOP5NT (NUC127) domain
  ------ inclusion threshold ------
      0.019   14.4  19.0      0.024   14.0  19.0    1.1  1  CDC27         DNA polymerase subunit Cdc27
       0.31   10.8  16.9       0.52   10.1  16.9    1.3  1  RR_TM4-6      Ryanodine Receptor TM 4-6
        1.2    7.4  20.0        1.6    6.9  20.0    1.2  1  CDC45         CDC45-like protein
        2.5    8.2  32.8          4    7.5  32.8    1.2  1  RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
        3.1    7.8   9.6         25    4.9   0.0    2.3  2  RP-C_C        Replication protein C C-terminal region
        4.3    7.6  20.4        7.9    6.8  20.4    1.4  1  PcfK          PcfK-like protein
        8.3    4.4  10.0         13    3.7  10.0    1.2  1  Hid1          High-temperature-induced dauer-formation protei


Domain annotation for each model (and alignments):
>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.8   0.1   4.5e-88     9e-85       1     229 [.     179     412 ..     179     413 .. 0.94

  Alignments for each domain:
  == domain 1  score: 283.8 bits;  conditional E-value: 4.5e-88
                 HHHHHHHHHHHHHHHHHHHHTTTSTCHHHHS-SHHHHHHHHHHCCCCHCCT.HHTT..........HH.HHHHHHHHHHCHHHH-SSS-S-HHHHHHHH CS
         Nop   1 lldeidkeintlhkrvrewYswhFpELeslvkdnleYakvvkligneredlekkee.........dee.lakevimaakvtastsmgaelseedlknik 89 
                 lld++dk+int+++rv+ewY+whFpEL++lv+dn+++a++v +i+ ++ +l+++ +         d+  +a++vi+ a++    smg+++se+d++n++
  CCD22346.1 179 LLDQLDKDINTFAMRVKEWYGWHFPELAKLVPDNYKFAQLVLFIK-DKASLNDE-SlhdlaailgDDAgIAQRVIDNARI----SMGQDISETDMENVS 271
                 689******************************************.77888555.13458888884446***********....*************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHSSHHHHHCS-HHHHTTTT-HHHHCCCHH.T---SSSCHHHCSHHHHHTS-CC CS
         Nop  90 elcdrvleleelrkelleYlesrmsaiAPNlsaLvGeevaarLishaGgLtnLakmPastiqilGaekalfralk.kkntpkyGliyhselvqkatppk 187
                  +++rv++l e+rk+l +Yl ++m+++APNls+L+Ge ++arLishaG+LtnL+k  ast+qilGaekalfralk k+ntpkyGliyhs ++ ka ++k
  CCD22346.1 272 IFAQRVVSLVEYRKQLFDYLCEKMHTVAPNLSELIGEVIGARLISHAGSLTNLSKQAASTVQILGAEKALFRALKtKGNTPKYGLIYHSGFIAKA-SAK 369
                 ***************************************************************************777***************77.*** PP

                 CHHHHHHHHHHHHHHHHHHHHTT---.-SHHHHHHHHHHHHHH CS
         Nop 188 lkkkiaRllaaKvalaaRiDafsekd.gslGkklreeiekklk 229
                 +k++i+R+la+K+++a+RiD++s+++ + +G  l++++e++l+
  CCD22346.1 370 NKGRISRYLANKCSMASRIDNYSDEPtNVFGSVLKKQVEQRLE 412
                 ********************8888888**************97 PP

>> NOP5NT  NOP5NT (NUC127) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.3   6.6e-24   1.3e-20       1      65 []       6      72 ..       6      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 6.6e-24
      NOP5NT  1 fiLfEtaaGYaLfkvkdk.....kllkkddlvkdsvsdlekfsklvkLkaFqkFesaaeALenanaiseG 65
                ++LfE ++GYa+fkvk +     ++lk+   v+++++d+ +f klv+L++F++F+ aaeALenan++seG
  CCD22346.1  6 YLLFEEPTGYAIFKVKLQqddigSRLKE---VQEQINDFGSFTKLVELVSFAPFKGAAEALENANDVSEG 72
                89*************8888999999999...**************************************9 PP

>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  19.0   1.2e-05     0.024     233     299 ..     428     492 ..     317     502 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
       CDC27 233 eakeqkveeeseeekekedkeleddsaaeeeeeeekstkkekrrqkklessdeeeeerekekekrkr 299
                 ++     ++e+ e +ekedk+ +++ + e++eee++++k+  ++ kk +++++++ +r+k+k+krkr
  CCD22346.1 428 QEAMDLYNKEKPETEEKEDKVSSKKRKLEDDEEEKEPKKE--KKEKKEKRKRKKKRRRKKRKKKRKR 492
                 2333334455666666666666666665555555555555..3333333333333333333333222 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  16.9   0.00026      0.52      64     154 ..     393     490 ..     367     499 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
                 XXXXXXXXXXXXXXXXXXXX......XXXXXXXX....XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXX CS
    RR_TM4-6  64 kkseagLgDlseteaeespt......pelkkkla....eeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskk 152
                 +++++ +g + ++++e+ ++      p+lk++la     +  ++e+ e+ee++ + + +k++ e+ e+e+++k+   e+ke++e+ ++kkk++++k+kk
  CCD22346.1 393 DEPTNVFGSVLKKQVEQRLEfyntgkPTLKNELAiqeaMDLYNKEKPETEEKEDKVSSKKRKLEDDEEEKEPKK---EKKEKKEKRKRKKKRRRKKRKK 488
                 56667788888888888877776666666666664322111112222222222222223444444444443333...2222222222222222222222 PP

                 XX CS
    RR_TM4-6 153 ke 154
                 k 
  CCD22346.1 489 KR 490
                 22 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  20.0   0.00081       1.6     153     216 ..     435     498 ..     398     503 .] 0.41

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00081
       CDC45 153 eeedeedeeedeeeskkkrksksdeeee..sddddersrkrrrsepsakklrrqlkkerrkyeavl 216
                 ++e+ e+ee++++ s+kkrk ++deee+  +++++e+++kr+r++  ++++++++kk++rk ++++
  CCD22346.1 435 NKEKPETEEKEDKVSSKKRKLEDDEEEKepKKEKKEKKEKRKRKK--KRRRKKRKKKRKRKIRRRI 498
                 222223333333333333332222222222222222222222222..2222222222222222222 PP

>> RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  32.8     0.002         4     129     202 ..     425     492 ..     411     496 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.002
                   ............XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX..XXXXXX...XXXXXX CS
  RNA_polI_A34 129 igssseesegekekkkkpkakkkekkkkkkkaaeedeeeeapkkkkkkkkkkkekkeeekkeekeeeskkskkk 202
                   ++++++ +  +kek++++++++k ++kk+k +++e+  e++pkk+kk+kk+k+++k+   k +++ + kk++k 
    CCD22346.1 425 LAIQEAMDLYNKEKPETEEKEDKVSSKKRKLEDDEE--EKEPKKEKKEKKEKRKRKK---KRRRK-KRKKKRKR 492
                   566666777788888888888888888888888888..9999999999988888884...22222.22222222 PP

>> RP-C_C  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.012        25     114     157 ..     218     261 ..     215     267 .. 0.90
   2 ?    1.2   8.8      0.17   3.3e+02      51      98 ..     435     486 ..     402     499 .. 0.44

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.012
      RP-C_C 114 iadYapdgairsWrdLvaaAevvrsmlgvspsaweeAcevmGre 157
                 +  +++d+a+ + + L++ A+++   +g+ + + ++A+  mG++
  CCD22346.1 218 LVLFIKDKASLNDESLHDLAAILGDDAGIAQRVIDNARISMGQD 261
                 667888888889999***************************86 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.17
      RP-C_C  51 nssanesqnerhiqnsnp....dsssesepasekereekeaaaasaeaepse 98 
                 n+++ e+++++++ +s++    d+++e+ep++ek++++++++ +++++++++
  CCD22346.1 435 NKEKPETEEKEDKVSSKKrkleDDEEEKEPKKEKKEKKEKRKRKKKRRRKKR 486
                 2222233333333333332222233333344444333333333333332222 PP

>> PcfK  PcfK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  20.4     0.004       7.9       2     122 ..     366     486 ..     365     495 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.004
        PcfK   2 gtekfkelIkeyLeerakedealaakvlkekKtleeclkYileeakklaesgcaavsddevyewaveYfeeddievtkeeekaekradavskkqkekkk 100
                 +++k k  I+ yL +++   + +++   +++  + ++lk  +e+  ++ ++g+  ++++   + a++ +++++ e++++e+k+  ++++++  ++ek+ 
  CCD22346.1 366 ASAKNKGRISRYLANKCSMASRIDNYSDEPTNVFGSVLKKQVEQRLEFYNTGKPTLKNELAIQEAMDLYNKEKPETEEKEDKVSSKKRKLEDDEEEKEP 464
                 6778889999*******99999999999999999999999999999999************************99999999977777777777776666 PP

        PcfK 101 akkkkpeeekkkkkkkekkekq 122
                 +k+kk+++ek+k+kkk++ +k 
  CCD22346.1 465 KKEKKEKKEKRKRKKKRRRKKR 486
                 5555553333333333333332 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  10.0    0.0066        13     610     695 ..     404     489 ..     358     496 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0066
        Hid1 610 eesrsesrspslsevpelksslaitddeskaereksatessssqavsqlremsekarakesaesteesrqesatskkspsgmsqsa 695
                 +++ ++  ++  + +p+lk++lai++  +  ++ek +te++++++ s++r++++ +++ke++++++e++++++ +kk+  +  +++
  CCD22346.1 404 KKQVEQRLEFYNTGKPTLKNELAIQEAMDLYNKEKPETEEKEDKVSSKKRKLEDDEEEKEPKKEKKEKKEKRKRKKKRRRKKRKKK 489
                 44456667788888999****************99999999999999999999999999998888888887777777665554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2851  (0.159016); expected 358.6 (0.02)
Passed bias filter:                      913  (0.0509231); expected 358.6 (0.02)
Passed Vit filter:                       283  (0.0157845); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.46
# Mc/sec: 3317.85
//
Query:       CCD22347.1  [L=422]
Description: hypothetical protein NDAI_0A01890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-22   79.2   2.2      2e-22   79.2   2.2    1.9  2  ADH_N            Alcohol dehydrogenase GroES-like domain
    9.1e-22   77.4   0.2    1.6e-21   76.6   0.2    1.4  1  ADH_zinc_N       Zinc-binding dehydrogenase
     0.0022   17.3   1.4     0.0036   16.6   1.4    1.3  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain
     0.0036   17.6   0.0     0.0063   16.8   0.0    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
     0.0044   16.4   0.1     0.0075   15.6   0.1    1.3  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
     0.0058   16.2   0.1      0.037   13.6   0.1    2.0  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
  ------ inclusion threshold ------
      0.062   13.1   0.1       0.11   12.3   0.1    1.3  1  HycI             Hydrogenase maturation protease
      0.072   13.4   0.0       0.13   12.5   0.0    1.4  1  TrkA_N           TrkA-N domain
      0.079   13.4   0.1       0.14   12.6   0.1    1.3  1  NAD_binding_7    Putative NAD(P)-binding
      0.089   13.8   0.0       0.19   12.8   0.0    1.6  1  ADH_zinc_N_2     Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   2.2   1.1e-25     2e-22       2      78 ..     121     196 ..     120     210 .. 0.96
   2 ?   -2.3   0.0       2.2   3.9e+03      50      62 ..     229     241 ..     215     248 .. 0.71

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 1.1e-25
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-G CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegee 78 
                 +ev+ik+ ++++C++D  +l+g  ++e ++p ilGHE +G+ve+vg++v+++kvGd+V++  + +cgeC+ Ck+g  
  CCD22347.1 121 HEVRIKIDYTAVCHTDAYTLSG-VDPEGAFPSILGHEGSGIVESVGEGVTNVKVGDHVIALYTAECGECKFCKSGXX 196
                 89********************.8**************************************************975 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.2
                 -CS--TT-EEEE- CS
       ADH_N  50 vkklkvGdrVvve 62 
                 + ++++Gd V+v 
  CCD22347.1 229 TANVQKGDTVAVF 241
                 3459999999984 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.2     9e-25   1.6e-21       2     118 ..     246     369 ..     245     382 .. 0.90

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 9e-25
                 HHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEET....TTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEE.EEEEECSCTSS CS
  ADH_zinc_N   2 vGlaavqlAkalGa.eviavdsseeklelakklGadeviny....kea.dlverikeltggegvdvvfecvGsgatleaalkllkpg.GrlvvvGggkg 93 
                 vGl +vq Aka Ga ++i+vd++++k +  +++Ga+ +in+    ke  ++v+++ e+t+ +g+ + f+c+G+ +++++al+++++g G   ++G+   
  CCD22347.1 246 VGLSVVQGAKARGAsKIIVVDVNDQKKQWSMDFGATDFINPktdlKEGeTIVSKLIEMTD-GGLEYTFDCTGNTKVMRDALEACHKGwGESIIIGVAAA 343
                 9****************************************888766667*********5.5**********************************777 PP

                 EEEEEHHHHH.HTT-EEEEE-SSCHH CS
  ADH_zinc_N  94 eeefdlrnll.lkeksilGsllgslr 118
                 +ee+++r++   + +  +Gs +g+++
  CCD22347.1 344 GEEISTRPFQlVTGRVWKGSAFGGIK 369
                 78899999654999999*****9954 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.4     2e-06    0.0036      21      74 ..     228     282 ..     218     307 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2e-06
                  CEETCB---.EEEEESTSHHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTTCE CS
  AlaDh_PNT_C  21 Ggvpgvepa.kvlviGgGvaGlqAiatakglga.kVtvlDvrparleqleslgakf 74 
                   + + v+++ +v v+G+G++Gl+ ++ ak+ ga k+ v+Dv+ ++++   ++ga+ 
   CCD22347.1 228 KTAN-VQKGdTVAVFGAGTVGLSVVQGAKARGAsKIIVVDVNDQKKQWSMDFGATD 282
                  4444.44542689******************9956999******999999988863 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.5e-06    0.0063       1      91 [.     238     330 ..     238     332 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.5e-06
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS....SEEEE-SSGG.GHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg....dlvvnlsppi.ssldvlkaC 89 
                      v ++GaG vG +v++  ++++    +i+v+d +++k +    +   ++f++ + d ++ e ++++l++ +    +   ++++++   +d l+aC
       CCD22347.1 238 VAVFGAGTVGLSVVQGAKARGAS--KIIVVDVNDQKKQWSM-DFGATDFINPKTDLKEGETIVSKLIEMTdgglEYTFDCTGNTkVMRDALEAC 328
                      679******************99..9**********66665.569*********************8887668889999999997778999999 PP

                      HH CS
  Sacchrp_dh_NADP  90 ie 91 
                      ++
       CCD22347.1 329 HK 330
                      86 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   4.2e-06    0.0075      34      74 ..     233     275 ..     223     304 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.2e-06
                   GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHH.C CS
  2-Hacid_dh_C  34 lsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkee.e 74 
                    +g tv+++G+G +G +v + +ka g+ k+i++d++ +k++ +
    CCD22347.1 233 QKGDTVAVFGAGTVGLSVVQGAKARGAsKIIVVDVNDQKKQwS 275
                   5799**********************99********9987732 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.33     6e+02      31      59 ..      56      84 ..      52     103 .. 0.83
   2 !   13.6   0.1   2.1e-05     0.037       2      35 ..     237     271 ..     236     289 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.33
                    S-HHHHHHHCTTS-SS--TTHHHHHHHHC CS
  UDPG_MGDP_dh_N 31 ideekvdklnsgkipiyepgLeelvkkav 59
                     +++k  ++  gk+pi    L + ++++ 
      CCD22347.1 56 LNQNKLTNISIGKLPISRSPLTQFIQTRS 84
                    6899*****************99998776 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 2.1e-05
                     EEEEE--STTHHHHHHHHHHCT.SEEEEE-S-HHH CS
  UDPG_MGDP_dh_N   2 kisviGlGYvGlvtaavlaeig.hevigvDideek 35 
                     +++v+G+G vGl       ++g  ++i+vD++++k
      CCD22347.1 237 TVAVFGAGTVGLSVVQGAKARGaSKIIVVDVNDQK 271
                     699*********999988888879*******9987 PP

>> HycI  Hydrogenase maturation protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   6.1e-05      0.11      11      47 ..     232     270 ..     226     274 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.1e-05
                 EC--TTEEEEEECT-SGGGHHHHCC..-SEEEEEEE--S CS
        HycI  11 yefkenvtviDgGtqglelvgtlee..adkliivDavdf 47 
                 +++ + v+v+ +Gt+gl+ v+  +   a+k+i+vD+ d 
  CCD22347.1 232 VQKGDTVAVFGAGTVGLSVVQGAKArgASKIIVVDVNDQ 270
                 556669***************999999********9775 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.5e-05      0.13       1      35 [.     238     273 ..     238     288 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.5e-05
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkdeerve 35 
                 +++ G+G+vG s+++  ++ g ++++v+d ++++ +
  CCD22347.1 238 VAVFGAGTVGLSVVQGAKArGASKIIVVDVNDQKKQ 273
                 689****************66688*******98865 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1     8e-05      0.14       6      84 ..     234     330 ..     232     349 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8e-05
  NAD_binding_7   6 kgkkvlvvGgGevAarkvrklleaga.kvtvvapevkeele............elvklaeeel..ekdlegad....lviaatddrelneriaeaa 82 
                    kg +v v+G+G+v+++ v+   + ga k++vv+ +  ++ +             + +l+e e   +k +e +d      + +t ++++ +   ea+
     CCD22347.1 234 KGDTVAVFGAGTVGLSVVQGAKARGAsKIIVVDVND-QKKQwsmdfgatdfinPKTDLKEGETivSKLIEMTDggleYTFDCTGNTKVMRDALEAC 328
                    5789*******************9963788888773.22223344443333333333433332223334433333338888888888888888888 PP

  NAD_binding_7  83 ka 84 
                    ++
     CCD22347.1 329 HK 330
                    75 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0    0.0001      0.19      15     125 ..     292     411 ..     278     413 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0001
                   H.........HHH-TT-EEEEEES-HHHHH.HHHHHHE.EEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH CS
  ADH_zinc_N_2  15 e.........aatggegvDvvldtvggealleaslkvl.pggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGk 101
                   e         + t  +g  + +d++g+++ ++++l+++ +g G  + ig   + ++++ ++++  +++v     f   +  ++ ++  l + ++ G+
    CCD22347.1 292 EgetivskliEMT-DGGLEYTFDCTGNTKVMRDALEAChKGWGESIIIGVAAAGEEISTRPFQLVTGRVWKGSAFGGIK--GRSEMGGLIKDYQNGN 385
                   2444455555556.45799*******88888*******8888**99998545666666666666666666556664444..5555************ PP

                   ---..-EEEEEEGGGHHHHHHHHHSS CS
  ADH_zinc_N_2 102 lrp..vvdrvfpleeaaeAhrylesg 125
                   l++   ++++ p++e++ A+++l++g
    CCD22347.1 386 LKVdeFITHRRPFTEINNAFEDLHHG 411
                   9984468888*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2980.82
//
Query:       CCD22348.1  [L=565]
Description: hypothetical protein NDAI_0A01900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-21   75.6  11.6    1.4e-10   40.3   2.7    2.6  2  zf-RanBP        Zn-finger in Ran binding protein and others
    7.9e-08   32.0   0.3    0.00016   21.5   0.0    3.4  3  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
     0.0012   18.9   0.0     0.0032   17.6   0.0    1.7  1  RRM_7           RNA recognition motif
  ------ inclusion threshold ------
      0.044   13.8   0.0       0.14   12.2   0.0    1.8  2  Importin_rep_3  Importin 13 repeat
      0.092   12.8   3.3        6.5    6.9   0.2    2.6  2  Rubredoxin      Rubredoxin
       0.23   11.5   9.0        2.3    8.3   0.6    2.5  2  DZR             Double zinc ribbon
       0.32   10.8   2.5         16    5.4   0.1    2.5  2  zf-MIZ          MIZ/SP-RING zinc finger


Domain annotation for each model (and alignments):
>> zf-RanBP  Zn-finger in Ran binding protein and others
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   2.7   5.3e-14   1.4e-10       3      29 ..     328     354 ..     326     355 .. 0.95
   2 !   40.0   1.7   6.9e-14   1.8e-10       1      28 [.     449     476 ..     449     478 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 5.3e-14
                 SSEE-SSS--EEESSSSB-TTT--BTS CS
    zf-RanBP   3 gdWdCskClvqNfawstkCvaCqapkp 29 
                 gdW+C++C+++Nf+ +t+C++C++p+p
  CCD22348.1 328 GDWNCPSCGFSNFQRRTACFRCSFPAP 354
                 9************************99 PP

  == domain 2  score: 40.0 bits;  conditional E-value: 6.9e-14
                 GSSSEE-SSS--EEESSSSB-TTT--BT CS
    zf-RanBP   1 regdWdCskClvqNfawstkCvaCqapk 28 
                 r+gdW+C++C+++Nfa++ +C++C+ pk
  CCD22348.1 449 RAGDWKCPSCTYHNFAKNIACLRCGDPK 476
                 89**********************9777 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         3   7.8e+03      22      51 ..      42      56 ..      37      66 .. 0.58
   2 !   21.5   0.0   6.1e-08   0.00016       1      70 []     205     287 ..     205     287 .. 0.73
   3 ?   -2.9   0.1       2.5   6.4e+03      34      43 ..     490     499 ..     484     516 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3
                TSCEEEEEEEEETTTSEEEEEEEEESSHHH CS
       RRM_1 22 fGpiksiklvrdetgkskgfafVeFesked 51
                 +p+ si +++d               +e+
  CCD22348.1 42 TNPVASIAISND---------------SEN 56
                566666666666...............333 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 6.1e-08
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE..............TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd..............etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +f++nLppd+t++eL+++F + ++   +   ++                +++  ++f+ F+++e+A++ l  lngk + +++l+
  CCD22348.1 205 IFISNLPPDITQNELETWFANHNSKPICYWTSKtpdeysrnfhnntyVMNQHSIIGFIIFQTHEEAKQSLL-LNGKSISSSTLH 287
                 8******************9998765555444442333222221234445667789999999999999999.999999988875 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.5
                 TTTSEEEEEE CS
       RRM_1  34 etgkskgfaf 43 
                  t++s++f+f
  CCD22348.1 490 ITNNSNNFGF 499
                 6888999998 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.2e-06    0.0032       2      71 ..     203     279 ..     202     293 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkv.lvdwPkk..aeskkkaae...nskaakgyvflvfe.deksvkaLleact 71 
                 r +F+  lP+Dit++el++ f ++ +  ++ w  k   e+++++++   ++++++   f++f+ +e++ ++Ll + +
  CCD22348.1 203 RVIFISNLPPDITQNELETWFANHNSKpICYWTSKtpDEYSRNFHNntyVMNQHSIIGFIIFQtHEEAKQSLLLNGK 279
                 679******************99976516678777663333333333444444555679999835677788877654 PP

>> Importin_rep_3  Importin 13 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.5e-05      0.14      16      73 ..     116     176 ..     114     178 .. 0.88
   2 ?   -2.6   0.0       2.3   5.8e+03      52      65 ..     303     316 ..     294     318 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
  Importin_rep_3  16 fveflsqceeipel...kqvvqedGklLvetvLeaiggesprsllehladvLlaLnkhcfe 73 
                     +vef + c+++pel   +++v+++   +++ +L   + ++    ++  +dvLl+L k+c +
      CCD22348.1 116 WVEFKKFCANHPELdlnEEMVTSKDVAILTDILGLQSNNTENYTIDISTDVLLSLYKKCSS 176
                     788888888888874446999**************************************76 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.3
  Importin_rep_3  52 sprsllehladvLl 65 
                     s+ ++l+h+ d+L+
      CCD22348.1 303 SSTKVLDHTQDILI 316
                     66789999999996 PP

>> Rubredoxin  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2    0.0026       6.5      34      42 ..     329     337 ..     327     341 .. 0.86
   2 ?    5.8   0.3    0.0053        14      34      41 ..     452     459 ..     447     465 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0026
                 T-BBTTTB- CS
  Rubredoxin  34 dWvCPdCgv 42 
                 dW CP+Cg 
  CCD22348.1 329 DWNCPSCGF 337
                 9******96 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0053
                 T-BBTTTB CS
  Rubredoxin  34 dWvCPdCg 41 
                 dW+CP+C 
  CCD22348.1 452 DWKCPSCT 459
                 9******7 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.3    0.0036       9.2       1      21 [.     332     352 ..     329     370 .. 0.83
   2 ?    8.3   0.6   0.00088       2.3       1      19 [.     455     473 ..     442     484 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0036
         DZR   1 CpqCgeelppdarfCseCgtk 21 
                 Cp+Cg  + ++   C++C  +
  CCD22348.1 332 CPSCGFSNFQRRTACFRCSFP 352
                 899999999999999998655 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00088
         DZR   1 CpqCgeelppdarfCseCg 19 
                 Cp+C   + ++++ C +Cg
  CCD22348.1 455 CPSCTYHNFAKNIACLRCG 473
                 5555555555555555555 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1    0.0061        16      39      48 ..     327     336 ..     315     338 .. 0.73
   2 ?    4.9   0.2    0.0085        22      38      48 ..     449     459 ..     445     461 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0061
                 S---B-TTT- CS
      zf-MIZ  39 tetWnCPvCs 48 
                    WnCP C 
  CCD22348.1 327 LGDWNCPSCG 336
                 345******5 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0085
                 HS---B-TTT- CS
      zf-MIZ  38 rtetWnCPvCs 48 
                 r+  W+CP C 
  CCD22348.1 449 RAGDWKCPSCT 459
                 5678******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       995  (0.0554967); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4148.11
//
Query:       CCD22349.1  [L=214]
Description: hypothetical protein NDAI_0A01910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-33  113.9   1.3    1.1e-32  113.3   0.0    1.9  2  AAA_18           AAA domain
      4e-07   30.5   0.0    1.6e-06   28.6   0.0    2.0  2  AAA_17           AAA domain
    1.8e-05   25.1   0.0    3.7e-05   24.0   0.0    1.8  1  AAA_22           AAA domain
    1.8e-05   24.5   0.1       0.21   11.2   0.0    2.3  2  Thymidylate_kin  Thymidylate kinase
    0.00025   21.5   0.0    0.00041   20.8   0.0    1.7  1  AAA_16           AAA ATPase domain
    0.00069   19.1   0.0     0.0073   15.8   0.0    2.1  2  KTI12            Chromatin associated protein KTI12
    0.00097   19.4   0.1     0.0034   17.6   0.0    1.9  2  AAA_28           AAA domain
     0.0017   18.5   0.1       0.75    9.9   0.0    2.3  2  ADK              Adenylate kinase
     0.0022   18.4   0.1      0.008   16.6   0.0    1.9  2  RNA_helicase     RNA helicase
      0.003   17.0   0.1      0.011   15.1   0.0    1.9  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
     0.0042   17.2   0.0       0.32   11.2   0.0    2.5  2  AAA_33           AAA domain
     0.0043   16.9   0.3        2.4    8.0   0.0    2.4  2  dNK              Deoxynucleoside kinase
     0.0079   15.9   0.0      0.023   14.4   0.0    1.8  1  AAA_29           P-loop containing region of AAA domain
     0.0089   16.0   0.0      0.015   15.3   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
  ------ inclusion threshold ------
      0.012   14.9   0.0       0.04   13.2   0.0    1.8  2  Zeta_toxin       Zeta toxin
      0.019   15.5   0.1       0.28   11.7   0.0    2.1  2  ABC_tran         ABC transporter
      0.025   13.9   0.0      0.044   13.2   0.0    1.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.027   14.4   0.0      0.057   13.3   0.0    1.6  1  NTPase_1         NTPase
      0.049   12.6   0.0       0.11   11.4   0.0    1.5  1  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
      0.052   13.6   0.0       0.15   12.1   0.0    1.8  2  AAA_14           AAA domain
      0.076   13.1   1.6        1.1    9.2   1.6    2.6  1  DUF87            Helicase HerA, central domain
      0.081   13.4   0.0       0.18   12.2   0.0    1.7  1  AAA              ATPase family associated with various cellul
      0.081   12.0   0.0       0.21   10.6   0.0    1.6  2  T2SSE            Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.0   1.4e-35   1.1e-32       2     129 ..      14     133 ..      13     134 .. 0.96
   2 ?   -1.0   0.3       3.1   2.4e+03      83      83 ..     172     172 ..     139     208 .. 0.55

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 1.4e-35
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf.gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdikkvv 98 
                 l+tGtpG+GK+t ++ L++rl ++  +n++d aken++++++d+   ++s+++dedk   lld+le     l++gk+ ++d+h+++ ++e+++d++ vv
  CCD22349.1  14 LITGTPGSGKSTTCELLQRRLpEYaYYNISDFAKENDCYEGYDKG--RKSHIVDEDK---LLDELEPL---LRKGKS-IVDWHVNDIFPERLIDLV-VV 102
                 79*******************************************..**********...99999997...568888.******************.** PP

      AAA_18  99 LtaspeelleRlekRgyeeakikeneeaeil 129
                 L++++++l++Rl+kRgy++ ki+en +aei+
  CCD22349.1 103 LRCDNSILYDRLNKRGYHDSKIQENLDAEIM 133
                 *****************************98 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 3.1
      AAA_18  83 l 83 
                  
  CCD22349.1 172 K 172
                 2 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0     2e-09   1.6e-06       1     122 [.      16     117 ..      16     132 .. 0.83
   2 ?   -1.3   0.0       3.6   2.8e+03      66      66 ..     158     158 ..     126     201 .. 0.59

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2e-09
                 EE-TTSSHHHHHHHHHHHH.TEEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky.gfthlsaGdllreeakrgglakardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevle 98 
                 +G PGsGK+t ce l++++ ++ +++ +d   e+   +g     d+ rk  ++++++l++e++  +++    ++ +vd h          d +p+    
  CCD22349.1  16 TGTPGSGKSTTCELLQRRLpEYAYYNISDFAKENDCYEGY----DKGRKSHIVDEDKLLDELEPLLRK----GKSIVDWHVN--------DIFPE---- 94 
                 69*****************89********99888766676....99****************988875....788***9984........45675.... PP

                 HH..SEEEEEE--HHHHHHHHHHH CS
      AAA_17  99 elkpdaiilleadpeeilerrlkd 122
                  l +d++++l +d+  +++r+ k+
  CCD22349.1  95 RL-IDLVVVLRCDNSILYDRLNKR 117
                 44.699********9999888775 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.6
                 H CS
      AAA_17  66 a 66 
                 +
  CCD22349.1 158 E 158
                 1 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.7e-08   3.7e-05       4      38 ..       9      47 ..       6     183 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4.7e-08
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaee....e 38
                ++  l++tG +G+GK+t+++ l+++l+e+a+ +     +
  CCD22349.1  9 YEPNLLITGTPGSGKSTTCELLQRRLPEYAYYNIsdfaK 47
                56779*********************8877655555542 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00027      0.21       3      25 ..      17      39 ..      15      50 .. 0.85
   2 !   11.0   0.1   0.00031      0.24     101     182 ..      83     161 ..      76     164 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
                     ESTTSSHHHHHHHHHHHHHHTTE CS
  Thymidylate_kin  3 GlDGaGKttqaellkerlkeegi 25
                     G  G+GK+t +ell +rl+e ++
       CCD22349.1 17 GTPGSGKSTTCELLQRRLPEYAY 39
                     888***************99776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00031
                      TTTCHHHHHHGGGTTSE-SEEEEEESSHHHHHTSCCTTSSTTTSHHHHHHHHHHHHHHHHHHHH.TTSTEEEEETTS-HHHHH CS
  Thymidylate_kin 101 gvdldlvlslnedvllkPdltflldvdpevalkRlakrdeldeeeeeqldflrkvrerylelak.ederiliidasksieevh 182
                       vd+++     e ++   dl++ l +d ++ + Rl+kr+  d++++e+ld  + +  +++++++ ++++i++   s+ +e+++
       CCD22349.1  83 IVDWHVNDIFPERLI---DLVVVLRCDNSILYDRLNKRGYHDSKIQENLD-AEIMGVVLQDAVEsYQQEIVVELQSDDTEQME 161
                      566666666666666...*******************************9.66677778888888888888887777777766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   5.3e-07   0.00041      24      57 ..      10      43 ..       2     196 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.3e-07
      AAA_16 24 pelvllsGesGvGKsslvrellralekdggif.lr 57
                ++++l++G +G+GKs+  + l+r+l +  +++ ++
  CCD22349.1 10 EPNLLITGTPGSGKSTTCELLQRRLPEY-AYYnIS 43
                389*******************998865.665444 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.3e-06    0.0073       4      40 ..      13      69 ..      11      78 .. 0.87
   2 ?    0.8   0.0      0.34   2.6e+02      13      67 ..      80     139 ..      75     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.3e-06
                EEEE--TTSSHHHHHHHHHHHHHH....................TT--EEEE-THHH CS
       KTI12  4 vvltGlPssGKstrakeLakalee....................ekrsvvviddesl 40
                +++tG P sGKst  + L++ l e                    ++r+ +++d+++l
  CCD22349.1 13 LLITGTPGSGKSTTCELLQRRLPEyayynisdfakendcyegydKGRKSHIVDEDKL 69
                68*********************9999999999998888888888888888888876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.34
                 SHHHHHHHHHHHHHHTT--EEEE-..THHHH....TTSSS--GGGHHHHHHHHHHHHHHH CS
       KTI12  13 GKstrakeLakaleeekrsvvvid..deslg...iekdsykdsakekalRsslrsavkrd 67 
                 GKs +  ++++ + e+ ++ vv+   d+s+    ++k  y+ds+  ++l ++++  v +d
  CCD22349.1  80 GKSIVDWHVNDIFPERLIDLVVVLrcDNSILydrLNKRGYHDSKIQENLDAEIMGVVLQD 139
                 999999999999999887766654358888856666666****99999999999888665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.4e-06    0.0034       3      26 ..      14      39 ..      12      72 .. 0.79
   2 ?   -1.3   0.1       2.9   2.3e+03      29      58 ..     143     173 ..     122     191 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.4e-06
      AAA_28  3 vitGgestGKTtlleaLaar..gypv 26
                 itG++++GK+t++e L++r  +y +
  CCD22349.1 14 LITGTPGSGKSTTCELLQRRlpEYAY 39
                79****************99775443 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.9
      AAA_28  29 Eaareileeklakgedalpwv.edllafaer 58 
                  +  ei+ e++ ++++++++  e++++  ++
  CCD22349.1 143 SYQQEIVVELQSDDTEQMEANvERIVEWHKM 173
                 4455555555555544444444555544444 PP

>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00096      0.75       1      19 [.      15      33 ..      15      73 .. 0.82
   2 !    6.7   0.1    0.0091       7.1     103     127 ..      97     159 ..      81     187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00096
                EEESTTSSHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxx RF
         ADK  1 llGaPgaGKGtqaeklvkk 19
                + G+Pg+GK t +e l+++
  CCD22349.1 15 ITGTPGSGKSTTCELLQRR 33
                67************99875 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0091
                 ESEEEEEE--HHHHHHHHHT......................................GSHHH CS
                 xxxxxxxxxxxxxxxxxxxx......................................xxxxx RF
         ADK 103 ldlvleldvpeevlveRltg......................................Dneet 127
                 +dlv+ l++++++l +Rl +                                      D +e+
  CCD22349.1  97 IDLVVVLRCDNSILYDRLNKrgyhdskiqenldaeimgvvlqdavesyqqeivvelqsDDTEQ 159
                 799****************99999999998888888888888777777777777777733333 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     1e-05     0.008       2      57 ..      14      66 ..      13      70 .. 0.83
   2 ?   -1.1   0.1       3.2   2.5e+03      45      78 ..     142     169 ..     121     193 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1e-05
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYt.gqevvvidD 57
                  +++G +g GKSt+++ L ++l +        ++   ++e+d ++gY+ g + +++d+
    CCD22349.1 14 LITGTPGSGKSTTCELLQRRLPEYA----YYNISDFAKENDCYEGYDkGRKSHIVDE 66
                  799*************888888333....455555789********99999999986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3.2
  RNA_helicase  45 dgYtgqevvvidDfgqvkdeenpsdlaelirlvs 78 
                   ++Y+++ vv   ++ ++ +e   +++a++ r+v+
    CCD22349.1 142 ESYQQEIVV---ELQSDDTE---QMEANVERIVE 169
                   455533333...22222222...34444444444 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.4e-05     0.011      39      56 ..      10      27 ..       1      31 [. 0.81
   2 ?   -0.9   0.1       1.1   8.6e+02     138     168 ..     141     169 ..     113     175 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-05
                  -.SEEEE--TTSSHHHHH CS
  FtsK_SpoIIIE 39 ashllvaGatgsGKStal 56
                  +++ll+ G++gsGKSt+ 
    CCD22349.1 10 EPNLLITGTPGSGKSTTC 27
                  46**************86 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.1
                   HHHHHHTT---B-TT-............... CS
  FtsK_SpoIIIE 138 iaedpldifgdvflvlDnyddlaaenerits 168
                   +++++++i  +v l +D++++++a  eri++
    CCD22349.1 141 VESYQQEI--VVELQSDDTEQMEANVERIVE 169
                   44444554..678888999999888888876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00041      0.32       3      25 ..      14      39 ..      13      83 .. 0.77
   2 ?    3.7   0.0     0.081        64      99     125 ..      98     123 ..      87     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00041
      AAA_33  3 llvGlpGsGKstlaerllkklg...a 25
                l+ G pGsGKst  e l ++l+   +
  CCD22349.1 14 LITGTPGSGKSTTCELLQRRLPeyaY 39
                678************99999988433 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.081
      AAA_33  99 vrivvvetdeetlkeRlakRaangddr 125
                 +++vv+++d++ l +Rl kR  + d++
  CCD22349.1  98 DLVVVLRCDNSILYDRLNKRGYH-DSK 123
                 579*****************997.433 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0031       2.4       2      27 ..      14      39 ..      13      64 .. 0.81
   2 !    6.9   0.2    0.0067       5.2     112     151 ..      83     124 ..      75     176 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0031
                EEEESTTSSHHHHHHHHHCCSTCEEE CS
         dNK  2 vveGnIgaGKstlvklLskklgvkvf 27
                 + G+ g+GKst  +lL+++l+  ++
  CCD22349.1 14 LITGTPGSGKSTTCELLQRRLPEYAY 39
                589999*************9974333 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0067
                 HHHHHHHH.CCH..-SEEEEEE--HHHHHHHHHHCTTCCCTTS CS
         dNK 112 lldnllee.lak..pdlliYLkasletclerikkRgreeekki 151
                 + d+ +++ +++  +dl++ L+++   ++ r++kRg ++ k i
  CCD22349.1  83 IVDWHVNDiFPErlIDLVVVLRCDNSILYDRLNKRGYHDSK-I 124
                 566666441444789*********************98855.3 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     3e-05     0.023      24      37 ..      12      25 ..       2      31 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3e-05
      AAA_29 24 atlltGpsGsGKST 37
                + l+tG+ GsGKST
  CCD22349.1 12 NLLITGTPGSGKST 25
                69***********9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     2e-05     0.015       1      46 [.      12      56 ..      12      94 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2e-05
                EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B- CS
       AAA_5  1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrre 46
                ++l+ G pG+gKs+  e l ++l  e+ y++++++ +e+d   +++
  CCD22349.1 12 NLLITGTPGSGKSTTCELLQRRLP-EYAYYNISDFAKENDCYEGYD 56
                689********************7.688999999999999888888 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.1e-05      0.04      19      41 ..      13      35 ..       2      43 .. 0.80
   2 ?   -2.2   0.0       2.7   2.1e+03      39      63 ..     143     166 ..     134     179 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.1e-05
  Zeta_toxin 19 illgGqpGAGKselaellkdele 41
                +l+ G pG+GKs++ ell+++l 
  CCD22349.1 13 LLITGTPGSGKSTTCELLQRRLP 35
                5899***************9986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.7
  Zeta_toxin  39 elerqgnvvrldpDdlRelhPeyee 63 
                 +  +q+ vv+l+ Dd  ++  ++e 
  CCD22349.1 143 SY-QQEIVVELQSDDTEQMEANVER 166
                 33.4677777777776666555555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00035      0.28      14      35 ..      13      34 ..       8      91 .. 0.91
   2 ?    1.7   0.4      0.43   3.3e+02      52      90 ..     139     184 ..     102     205 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00035
                EEEEESTTSSHHHHHHHHTTSS CS
                xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagll 35
                + i+G  G+GKSt ++ll + l
  CCD22349.1 13 LLITGTPGSGKSTTCELLQRRL 34
                679**************99876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.43
                 B-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxx RF
    ABC_tran  52 qeleslrkeigvlpqepqlfpeltvren.......esdeeiekals 90 
                 +  es+++ei v  q +   +   + e+       ++d++ + + +
  CCD22349.1 139 DAVESYQQEIVVELQSDDTEQMEANVERivewhkmWMDQHKNGVTN 184
                 2333444444443333222222222222455444433333333333 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.6e-05     0.044      24      59 ..      12      47 ..       9      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.6e-05
  Mg_chelatase 24 nlllvGppGsGKtmlakrlpsllpplseeealevak 59
                  nll++G+pGsGK+   + l+  lp+    ++ + ak
    CCD22349.1 12 NLLITGTPGSGKSTTCELLQRRLPEYAYYNISDFAK 47
                  89**********************998877766655 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.3e-05     0.057       2      24 ..      13      35 ..      12      61 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.3e-05
                EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellk 24
                ++iTG pG+GK+T ++ + + l 
  CCD22349.1 13 LLITGTPGSGKSTTCELLQRRLP 35
                79*************99888775 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015      0.11      34      53 ..      15      34 ..       9      39 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
                EEE-TTSSHHHHHHHHHHHH CS
        MeaB 34 ltGvPGaGkstlvealglel 53
                +tG+PG+Gkst+ e l  +l
  CCD22349.1 15 ITGTPGSGKSTTCELLQRRL 34
                8************9998776 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00019      0.15       4      83 ..      12      77 ..       9      92 .. 0.67
   2 ?   -1.4   0.0       2.9   2.3e+03      29      43 ..     145     159 ..     104     186 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00019
      AAA_14  4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpewekal 83
                 l+itG   +GK+t ++ l  ++l    ++ y+n+ d  +++  d    +e + +     +++  + DE + ++e+e  l
  CCD22349.1 12 NLLITGTPGSGKSTTCELLQ-RRL---PEYAYYNISDFAKEN--D---CYEGYDK-----GRKSHIVDEDKLLDELEPLL 77
                589************97775.555...599999999855432..1...2333333.....33445566655555555555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.9
      AAA_14  29 kkesilyinldderd 43 
                 ++e +++++ dd ++
  CCD22349.1 145 QQEIVVELQSDDTEQ 159
                 233344444444333 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.6    0.0015       1.1      26      47 ..      13      34 ..       9     212 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0015
       DUF87 26 lAilgsTGsGKSntvavLleel 47
                l+i g+ GsGKS+t  +L ++l
  CCD22349.1 13 LLITGTPGSGKSTTCELLQRRL 34
                6799**************9988 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00023      0.18       1      30 [.      13      43 ..      13      90 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00023
                EEEESSTTSSHHHHHHHHHHHH.THEEEEEE CS
         AAA  1 vllyGppGtGKTllakavakel.gvefleis 30
                +l++G+pG GK+++++ + + l +  +++is
  CCD22349.1 13 LLITGTPGSGKSTTCELLQRRLpEYAYYNIS 43
                689**************99998334445544 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00027      0.21     130     155 ..      11      36 ..       5      45 .. 0.83
   2 ?   -2.1   0.1         2   1.6e+03      38      38 ..     151     151 ..     112     193 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
       T2SSE 130 glilvsGgTgsGKttllyallkeink 155
                  ++l++G+ gsGK+t+   l   +++
  CCD22349.1  11 PNLLITGTPGSGKSTTCELLQRRLPE 36 
                 589*************9887777766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
       T2SSE  38 e 38 
                 e
  CCD22349.1 151 E 151
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1473  (0.0821574); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 1442.44
//
Query:       CCD22350.1  [L=193]
Description: hypothetical protein NDAI_0A01920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-30  104.1   2.3    7.3e-30  103.7   2.3    1.2  1  NOT2_3_5  NOT2 / NOT3 / NOT5 family


Domain annotation for each model (and alignments):
>> NOT2_3_5  NOT2 / NOT3 / NOT5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   2.3   4.1e-34   7.3e-30       3     129 ..      55     190 ..      53     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 4.1e-34
    NOT2_3_5   3 llnspdsedaekprqyep..klphptsisy............pqeplyekle.sakklekldedtLFyiFYysqgtleqllAakeLkkrsWryhkelkt 86 
                 +++sp++e+++++  +ep   +p +    +             ++p  ++++ +++ +  ++++tLFy+FY ++gt+ q+l++ eL kr+Wryhk+lk 
  CCD22350.1  55 TFQSPWAETSRSE--VEPtfFIPDS----FthipdvlqsntkDTPPSFDSVQkDQQRVALFQDETLFYLFYKHPGTVIQELTYLELRKRNWRYHKTLKA 147
                 7899999999888..7774444444....311333334433333335556666999******************************************* PP

    NOT2_3_5  87 Wflreekeepkekteey.ekgsYkyFDyetWlkrrkkdfkleye 129
                 W+++++++ep ++++   e+gsY++FD ++W+k + ++f l y+
  CCD22350.1 148 WLTKDPMMEPVVSNDGLsERGSYVFFDPQRWEKCQ-REFLLFYN 190
                 **************9999*********77******.99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1440.86
//
Query:       CCD22351.1  [L=450]
Description: hypothetical protein NDAI_0A01930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-17   62.7   0.4    5.4e-17   61.6   0.4    1.6  1  zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.026   14.3   0.0    1.6  1  YL1_C     YL1 nuclear protein C-terminal domain


Domain annotation for each model (and alignments):
>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.4     6e-21   5.4e-17       1      57 []      89     140 ..      89     140 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 6e-21
    zf-Mss51   1 lCPvpkhkqtapkhvdfeCpdCGiptycseehwedDyeahle.icdtLrqvnedeHDL 57 
                 +CPv+       k+++++Cp +Gipt++s+e+we+D+++h++ i+d L++vn  eHDL
  CCD22351.1  89 KCPVT------GKEINYTCPISGIPTHHSKEAWENDTNYHQNkIYDILKKVNVFEHDL 140
                 59999......89****************************99**************9 PP

>> YL1_C  YL1 nuclear protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.9e-06     0.026       2      19 ..      90     107 ..      89     115 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.9e-06
       YL1_C   2 CdITGlpAkYrDPkTgLp 19 
                 C++TG++ +Y++P +g+p
  CCD22351.1  90 CPVTGKEINYTCPISGIP 107
                 ****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3476.94
//
Query:       CCD22352.1  [L=765]
Description: hypothetical protein NDAI_0A01940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-64  216.4   0.3    4.6e-64  215.8   0.3    1.3  1  DNA_ligase_A_M   ATP dependent DNA ligase domain
    8.8e-45  153.1   0.1    1.8e-44  152.1   0.1    1.5  1  DNA_ligase_A_N   DNA ligase N terminus
    4.4e-26   91.4   0.0    1.6e-25   89.5   0.0    2.0  2  DNA_ligase_A_C   ATP dependent DNA ligase C terminal region
    3.5e-05   24.2   0.1    7.9e-05   23.0   0.1    1.6  2  RNA_ligase       RNA ligase
  ------ inclusion threshold ------
      0.026   14.6   0.4        8.6    6.5   0.0    2.7  2  DNA_ligase_OB_2  DNA ligase OB-like domain


Domain annotation for each model (and alignments):
>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.8   0.3   1.3e-67   4.6e-64       1     204 []     403     608 ..     403     608 .. 0.96

  Alignments for each domain:
  == domain 1  score: 215.8 bits;  conditional E-value: 1.3e-67
                     -EEEEEESCHHHHHHHTTTSEEEEEEEESSEEEEEEE.ETTEEEEEETTS-B-GGGCHHHHHHHHHHBSTTESEEEEEEEEEEEETTTTCBEHHH CS
  DNA_ligase_A_M   1 pmLAeslksiekalkkleekafivEiKyDGeRaqvhk.egdkvklfSRrlkditaakpelvkalkeafkkdeksvilDGElvavdketgeilpfq 94 
                     pmLA+++k+i+++l+++++++f+ E+KyDGeRaqvh  e+++++++SR+++++t+++pe+         +++k +ilD+E+va+dke+++ilpfq
      CCD22352.1 403 PMLAKPTKAINEILDRFQGETFTSEYKYDGERAQVHLlEDGTMRIYSRNGENMTERYPEIHIGDFVKDRNETKTLILDCEAVAWDKEQQKILPFQ 497
                     9***********************************99*********************987776666667789********************* PP

                     HHCHHHHCHCCTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB--BTTTEEE--EEEESSHHHHHHHHHHHHHTTECEEEEEE... CS
  DNA_ligase_A_M  95 klasrkkkkkkveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeilkesedrvelaeslevkdveeleelleeaiseglEGlvvKn... 186
                     +l++rk+k++  +++  ++++clf+FDiL+++ ++l++++lkeRr++L++++++ ++++++a++l++++++el+++l++++++++EGl+vK+   
      CCD22352.1 498 VLSTRKRKDVLAKDV--KVRVCLFAFDILCHNSNKLINYSLKERREILHRVTTPAPGEFQYATELTTSNLDELQKFLDQSVNDSCEGLMVKMleg 590
                     *****9999977777..9**************************************************************************888 PP

                     TT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 187 pdskYepgkrsknwlKvK 204
                      +s+Yep+krs+nwlK+K
      CCD22352.1 591 EESHYEPSKRSRNWLKLK 608
                     899*************99 PP

>> DNA_ligase_A_N  DNA ligase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   0.1     5e-48   1.8e-44       1     172 [.     160     337 ..     160     338 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 5e-48
                     BCHHHHHHHHHHCC.---HHHHHHHHHHHHHTS-..SHHHHHHHHHH....SS-CCC.S------HHHHHHHHHHHHT--HHHHHHHHHHHS-HH CS
  DNA_ligase_A_N   1 pFaelaelfekieestkkrlekrailanffrkvesagpedlypalrL....llPdyd.greygigesllakalaealglskkkikdalakvgDlg 90 
                     p++e+++lf++ie+ t++rl++++++++f+ k+ +++p++l p+++L    l Pdy+ g e+g+ge ll+k ++e +g s ++i+++++++gDlg
      CCD22352.1 160 PYKEVCQLFQEIET-TSSRLSIIKLCSDFLIKIMKQDPQNLIPVTYLfinkLGPDYEpGLELGLGEGLLMKTISESCGKSLTQIRAQYRELGDLG 253
                     79************.99*************999999*********************999*********************************** PP

                     HHHHHHHCCHHHH------BHHHHHHHHHHHHH-.STTHHHHHHHHHHHHHHHS.-HHHHHHHHHHHCT---SS--HHHHHHHH CS
  DNA_ligase_A_N  91 evaeevlskrstlakkspltieevnelLdklaaa.gkgsedekkkilkkllkra.speEakyliriilkdlriglsektvldal 172
                     ++a e+++ ++t++k++plt+ ev++ L+ +a+a gk+s+++k+k++k++l ++ +  Eak+lir ++ +lrigl+ektvl  l
      CCD22352.1 254 QIALEARNVQPTMFKPKPLTVGEVFNNLKMIAKAaGKDSQTKKIKLIKRMLTACeDGVEAKFLIRSLESKLRIGLAEKTVLISL 337
                     ********************************999*******************999***********************9877 PP

>> DNA_ligase_A_C  ATP dependent DNA ligase C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.9   6.9e+03      25      47 ..     557     579 ..     552     607 .. 0.61
   2 !   89.5   0.0   4.5e-29   1.6e-25       1      99 []     633     742 ..     633     742 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.9
                     -SS--HHHHHHHHHHHGGGEECT CS
  DNA_ligase_A_C  25 gtGfsdaeleelrkklkelerkk 47 
                     +t ++ ++l+el+k l++  +++
      CCD22352.1 557 ATELTTSNLDELQKFLDQSVNDS 579
                     46678889999999997444333 PP

  == domain 2  score: 89.5 bits;  conditional E-value: 4.5e-29
                     GGGSEEEEEEEEEE..TTEEEEEEEE-SS--HHHHHHHHHHHGGGEECTTCESS---HHHHTTEEE-TT-EEEEEESEEECTSSSTT........ CS
  DNA_ligase_A_C   1 rgglvgslllgvyd..dgkleyvgkvgtGfsdaeleelrkklkelerkkppfaekvpeeekrdvWvePelvveVkfaeitasgkyka........ 85 
                     r+g++g +llg+y+  +g++e+++k+gtGfsd++l++l++klk    + p+ +   + + ++dvW+eP+l +eV  a+++ s+ yka        
      CCD22352.1 633 RTGTYGGFLLGCYNdnTGEFETCCKIGTGFSDEMLQQLHEKLKATVIDGPKATYIYDSSAEPDVWFEPSLLFEVLTADLSLSPIYKAgssaydkg 727
                     6899**********99999************************77777777766666666778******************************** PP

                     .EECT-EEEEE-TTS CS
  DNA_ligase_A_C  86 .slRfPrfkrlReDk 99 
                      slRfPrf+r+ReDk
      CCD22352.1 728 vSLRFPRFIRIREDK 742
                     **************8 PP

>> RNA_ligase  RNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.2   1.2e+04     133     148 ..     218     233 ..     163     238 .. 0.68
   2 !   23.0   0.1   2.2e-08   7.9e-05       3     161 .]     424     608 ..     422     608 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.2
                 HHHTC--EEEEEESSS CS
  RNA_ligase 133 skgnkrEGlVikpese 148
                  + + +EGl +k+ se
  CCD22352.1 218 LELGLGEGLLMKTISE 233
                 3556899999997776 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.2e-08
                 EEEEEE-SSEEEEEEEETT..EEEEETTCEB.CTTTHHHHHHTHHHHHHHHHHHHH..ECCEEEEEEEES......SS...TTSS.............. CS
  RNA_ligase   3 vvvtEKlDGtnfriylvke..vgvasRsqil.pfgeekfkefkrwaaalrkklkeklaneelilyGElig.....hsi.kygglpk............. 79 
                 +  + K DG++++++l ++  +++ sR+++  + ++++++            +k++ + ++lil +E +      ++i +                   
  CCD22352.1 424 FTSEYKYDGERAQVHLLEDgtMRIYSRNGENmTERYPEIHIGD--------FVKDRNETKTLILDCEAVAwdkeqQKIlP-----Fqvlstrkrkdvla 509
                 56678************8889**********532344443322........4444444678*********5554433341.....23444455566777 PP

                 .......EEEEEEEEEEECTTBECE--HHHHHHHHHCCT....B..EEEEE.SSHHHHHCCC..HHHHTC--EEEEEES...SSSBE.TTE.BSEEEEE CS
  RNA_ligase  80 .......efyvFdifdirdkeeqrylspdevealakglg....tvpvlyegkflaaeellell.lskgnkrEGlVikpe...selyk.nkg.raifKvk 161
                         +++Fdi++ + ++   y   +++e+l + +         ++e ++++++el+++l +s +  +EGl +k     ++ y+  k+ r+++K+k
  CCD22352.1 510 kdvkvrvCLFAFDILCHNSNKLINYSLKERREILHRVTTpapgEFQYATELTTSNLDELQKFLdQSVNDSCEGLMVKMLegeESHYEpSKRsRNWLKLK 608
                 799999999******9985555555555555777774433434222233333334444555533366779*******8766555556666689999986 PP

>> DNA_ligase_OB_2  DNA ligase OB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0024       8.6       2      36 ..     629     669 ..     628     690 .. 0.72
   2 ?    5.6   0.1    0.0046        16      53      66 .]     725     739 ..     716     739 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0024
                      ...EEEEEEEEEEEEE.TTEE......EEE-SS--HHHHHH CS
  DNA_ligase_OB_2   2 GkGkykgmlGallvetkkgkr......fkiGsGlsdaqRen 36 
                      G+Gk  g+ G +l    ++++       kiG+G+sd+  ++
       CCD22352.1 629 GRGKRTGTYGGFLLGCYNDNTgefetcCKIGTGFSDEMLQQ 669
                      89999999999886665433222345689*******97665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0046
                      SSSS.-EEEEEEEE- CS
  DNA_ligase_OB_2  53 skgv.pRfPsflrvR 66 
                      +kgv +RfP+f r+R
       CCD22352.1 725 DKGVsLRFPRFIRIR 739
                      67878*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1142  (0.0636957); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 5636.67
//
Query:       CCD22353.1  [L=122]
Description: hypothetical protein NDAI_0A01950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-19   70.1   3.7    2.6e-19   69.3   3.7    1.4  1  CENP-X    CENP-S associating Centromere protein X


Domain annotation for each model (and alignments):
>> CENP-X  CENP-S associating Centromere protein X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   3.7   1.5e-23   2.6e-19       2      74 ..      38     121 ..      37     122 .] 0.90

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 1.5e-23
                 HHHHHHHCC.C-SSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SE.............EEC..HHHHHHCHCHHCH CS
      CENP-X   2 ellarlLqe.sfkdektkItkdalelvaeylklFvrEavaRaaeeaeeegkeeseksk........lev..edLekiapqLlLD 74 
                 e+++++L++ sf++++t+Itk+++ ++++y++lF++Eav+R++e++ + + e+ ++++        +e+   dLe+i+++Ll+ 
  CCD22353.1  38 ETIEKILRSeSFQNKDTTITKETILMIQRYMDLFIKEAVIRSYENKVATQVEDFDDEEdadeedktIELthLDLERIVGLLLME 121
                 79********************************************9777777776667777888888866899********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1146  (0.0639188); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 905.85
//
Query:       CCD22354.1  [L=534]
Description: hypothetical protein NDAI_0A01960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-44  151.1   0.1      5e-44  150.2   0.1    1.5  1  DEAD        DEAD/DEAH box helicase
    8.2e-30  103.4   1.8    1.4e-28   99.4   0.5    2.8  3  Helicase_C  Helicase conserved C-terminal domain
  ------ inclusion threshold ------
        1.3    9.8   8.0        2.4    8.9   8.0    1.5  1  Mif2_N      Kinetochore CENP-C fungal homologue, Mif2, N-term


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.1   8.3e-48     5e-44       2     175 ..      62     226 ..      61     227 .. 0.96

  Alignments for each domain:
  == domain 1  score: 150.2 bits;  conditional E-value: 8.3e-48
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 +iQ+e+ip++++g+d+l++a+ G+GKT+af+ip l+++    + ++ +ali++PtreLa qt + +++++k++++++++++gg++ rd++ +l+++v++
  CCD22354.1  62 PIQEESIPIAITGRDILARAKNGTGKTAAFVIPTLERIK--PNLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHV 158
                 8*************************************5..6***************************************************888*** PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 +vgtpgr++dl s++  +ls+++++++DEad++l+ +f+  i++il  l       ++++q +++SAT+p +vk+
  CCD22354.1 159 LVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILIFL-------PKKHQSLLFSATFPLTVKE 226
                 *************9999********************************.......56678*********88886 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.064   3.8e+02      12      61 ..     101     152 ..      91     163 .. 0.66
   2 ?   -1.6   0.0      0.57   3.4e+03      14      29 ..     198     213 ..     187     242 .. 0.63
   3 !   99.4   0.5   2.4e-32   1.4e-28       3     111 .]     262     369 ..     260     369 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.064
                 HTTTTSEEEEEESSHH.HHHH...HHHHHHHTTSTEEEESTTSTHHHHHHHHHH CS
  Helicase_C  12 leeeggkilifvntid.rlek...vklllekkgikvavlhgelpqnereeileq 61 
                  + ++ ++li+v+t++  l+    v+ l ++ gi++ v +g   +n r++il+ 
  CCD22354.1 101 PNLNKIQALIMVPTRElALQTsqvVRTLGKHCGISCMVTTG--GTNLRDDILRL 152
                 55677899********8444344566665444999999999..55666666654 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.57
                 TTTSEEEEEESSHHHH CS
  Helicase_C  14 eeggkilifvntidrl 29 
                  + ++ilif++++ + 
  CCD22354.1 198 TIIEQILIFLPKKHQS 213
                 5557778887777633 PP

  == domain 3  score: 99.4 bits;  conditional E-value: 2.4e-32
                 HHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHH CS
  Helicase_C   3 leallellkleeeggkilifvntidrlekvklllekk...gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvt 98 
                 l++l  l+ ++ + ++++if+n+++r+   +ll +k    g+++ + h++++q+er++++++f++g+++ L+++d + rGidi+ vn+Vinfd+p++ +
  CCD22354.1 262 LHCLNTLF-SKLQINQAIIFCNSTNRV---ELLAKKItdlGYSCYYSHARMKQQERNRVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTSE 356
                 44455555.88999*************...6665444678*********************************************************** PP

                 HHHHHHTTSSSTT CS
  Helicase_C  99 syiqriGRtgRag 111
                 +y +riGR gR+g
  CCD22354.1 357 TYLHRIGRSGRFG 369
                 ***********86 PP

>> Mif2_N  Kinetochore CENP-C fungal homologue, Mif2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   8.0   0.00039       2.4      74     126 ..     441     492 ..     419     521 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00039
      Mif2_N  74 llsgrressrlplprarSPaktslksparrnsslaresqeerpsssPsraasq 126
                   +++++ + +p+p+++ P  t++  p +r++ ++ ++q++++++ P+++  +
  CCD22354.1 441 NNNNNNNGTFVPPPQQQNPQFTQMPPPHQRQQFMQ-QQQHQQQQNYPQQQIPT 492
                 2333447899************************9.77788888889887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2147  (0.11975); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.41
# Mc/sec: 3872.03
//
Query:       CCD22355.1  [L=638]
Description: hypothetical protein NDAI_0A01970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-68  230.6   1.3    4.3e-68  229.5   1.3    1.6  1  Pkinase         Protein kinase domain
    1.5e-38  132.5   0.5    2.2e-37  128.7   0.1    2.2  2  Pkinase_Tyr     Protein tyrosine kinase
    4.4e-06   25.9   7.8    1.4e-05   24.2   7.8    1.9  1  Haspin_kinase   Haspin like kinase domain
    0.00029   19.7   0.2    0.00075   18.4   0.2    1.9  1  Pkinase_fungal  Fungal protein kinase
     0.0003   20.2   0.0    0.00053   19.4   0.0    1.4  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
        0.1   12.2   0.0        0.1   12.2   0.0    2.2  2  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.5   1.3   1.4e-71   4.3e-68       3     264 .]     269     582 ..     267     582 .. 0.89

  Alignments for each domain:
  == domain 1  score: 229.5 bits;  conditional E-value: 1.4e-71
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE...SSEEEEEEE--TTEBHHHHHH......H CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee...kdelylvleyveggeladlle......r 91 
                 +l k+G+G++G+V+k ++  t+ki+A K+i  ek+++   ++++rE++i+k++k h+ni+ +y+++++   ++e+++++ey+++g+l+++l       +
  CCD22355.1 269 QLGKIGSGNSGTVVKTLHVPTSKIIAKKTIPLEKNNEIILNQLIRELTIMKSVKsHKNIISFYGAYYDnvkNNEIIILMEYMDCGSLDKILLtykrlvN 367
                 6789***************************************************************9999999************9999886555554 PP

                 HSS--HH.........HHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHH CS
     Pkinase  92 kgslsee.........eakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDv 180
                 +g ++++          ++k+ + +l+gl+yl+ + +iiHrD+Kp+NiL+++kg++Ki+DFG++k+l +s  +++fvgts+Y++PE +++n ys+k Dv
  CCD22355.1 368 RGFIDSKlknwfndslILSKLSYAVLNGLDYLYtNYKIIHRDIKPSNILVNSKGQVKICDFGVSKKLINSI-ADTFVGTSTYMSPERIQGNVYSTKGDV 465
                 4444444888898888999**************7778********************************99.*************************** PP

                 HHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS...................................-HHHHHHHHHH CS
     Pkinase 181 WslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei...................................seeakdllkkl 244
                 WslG++++el+tgk p+s ++++++++++ ++  +  k   ++++    +++i                                   + e++d+++k+
  CCD22355.1 466 WSLGLVIIELVTGKFPLSLNNNNSNHNNNNNNNNNNNKN--KNNNRNSDNDNIinnnnnspdgildllqrivnepspklprdnnnyqfPTEMIDFVNKC 562
                 ******************888888777776663332222..2222222233336888899*************************************** PP

                 T-SSGCCSTTHHHHHTSGGG CS
     Pkinase 245 lkkdpkkRltaeellqhpyl 264
                 + k++k+R +++ell+h+++
  CCD22355.1 563 CIKEEKNRSSIHELLAHDFI 582
                 *****************996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7   0.1   7.4e-41   2.2e-37       5     223 ..     271     499 ..     267     525 .. 0.82
   2 ?    1.7   0.0     0.042   1.3e+02     226     256 ..     547     577 ..     528     579 .. 0.86

  Alignments for each domain:
  == domain 1  score: 128.7 bits;  conditional E-value: 7.4e-41
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE...SSSSEEEEEE--TTEBHHHHHHHT.. CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkkl.khpnivkllgvct...keepllivteyvkgGdLlkfLrkk.. 95 
                   k+G+G+ G+Vv+         ++  +a Kt+  e+++e   ++l++e++imk++ +h+ni++++g+++   k+++++i++ey++ G+L+k L +   
   CCD22355.1 271 GKIGSGNSGTVVKTLHV----PTSKIIAKKTIpLEKNNEIILNQLIRELTIMKSVkSHKNIISFYGAYYdnvKNNEIIILMEYMDCGSLDKILLTYkr 364
                  589**********9988....666778888884455666669**************************98888889****************999889 PP

                  ...........CTTTSBHHHHHHHHHHHHHHHHHHHHT.TEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE CS
  Pkinase_Tyr  96 ...........ekekltlkdllsfalqvAkGmeyLesk.klvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk 181
                             ++   +   l ++++ v +G++yL ++ k++Hrd+   N+L++++ +vki+DfG+++++      + +++      +m+pE ++ ++
   CCD22355.1 365 lvnrgfidsklKNWFNDSLILSKLSYAVLNGLDYLYTNyKIIHRDIKPSNILVNSKGQVKICDFGVSKKL----INSIADTFVGTSTYMSPERIQGNV 458
                  *******987544444555677899**********76538*****************************9....3344455667789*********** PP

                  EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEE CS
  Pkinase_Tyr 182 ftsksDvWsfGvllwEiftlgespypglkneevleklkegkr 223
                  +++k DvWs G +++E++t g+ p++  +n++  ++ +++++
   CCD22355.1 459 YSTKGDVWSLGLVIIELVT-GKFPLSLNNNNSNHNNNNNNNN 499
                  *******************.****877655554444433222 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.042
                  BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 226 kpekcpeelyelmkkcweedpeeRptfselv 256
                  ++ + p+e+ ++++kc  ++ ++R +++el+
   CCD22355.1 547 NNYQFPTEMIDFVNKCCIKEEKNRSSIHELL 577
                  5567899*******************99986 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   7.8   4.7e-09   1.4e-05      29     255 ..     165     432 ..     141     443 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4.7e-09
  Haspin_kinase  29 qkf....................................sssssessssnkislPvkdqvsrdkikkklrnsesllslnsqeev..kdfdevilsq 86 
                    + +                                    ++++ + s+ ++i +P+ ++       +k + s+  l +  ++++   +   +  + 
     CCD22355.1 165 KTIkrkvppsplkltnnnntinniqshqttvikndtiiiQQQEDSDSPYKSIASPLYNN-------NKSSTSSPTLIVPTTNTTnnSSGGSTSPQH 253
                    33333333333333455555555577888888888888788888888888888888888.......344444333333333333112333333333 PP

  Haspin_kinase  87 ilelckikkilneadlasllndseklssevyqtke..kdkevvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkek..... 175
                    ++   +   i + +dl++l + + + s+ v +t +  ++k ++ K iple  ++++ ++++   el  +k vk   ++++    +++ + k     
     CCD22355.1 254 TIPTTDS--IYQLQDLVQLGKIGSGNSGTVVKTLHvpTSKIIAKKTIPLEKNNEIILNQLI--RELTIMKSVKSH-KNIISFYGAYYDNVKnneii 344
                    4444433..5555666788888999999999999986666777788***********9764..688888888877.77777777777777666788 PP

  Haspin_kinase 176 .....pdfyseqqlfl.vlllkdkGtdLeevklkswkq....alsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsR 255
                          d+ s +++ l +  l ++G      klk+w +      ++ + +++ L    t+++  HRd++  niLv+++++v ++d+ +s+
     CCD22355.1 345 ilmeyMDCGSLDKILLtYKRLVNRG--FIDSKLKNWFNdsliLSKLSYAVLNGLDYLYTNYKIIHRDIKPSNILVNSKGQVKICDFGVSK 432
                    8754455555444332144455555..4555777876522214566799*************************************9986 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2   2.5e-07   0.00075     315     396 ..     392     464 ..     144     475 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.5e-07
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhD 396
                     +++g+  L+++ +i+HrDi   Nil++     ++ +  + D+ + k+l +    s a + +GT  +m+ e ++g+  s   D
      CCD22355.1 392 VLNGLDYLYTNYKIIHRDIKPSNILVN-----SKGQVKICDFGVSKKLIN----SIADTFVGTSTYMSPERIQGNVYSTKGD 464
                     568999*********************.....567778999999999994....4445799999999999998765665555 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.8e-07   0.00053     162     259 ..     402     491 ..     388     539 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.8e-07
  Kinase-like 162 akglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlateeake 259
                  ++ ++h ++++ n+l + kg++++ +f+      +k   ++++ +f    +  s  +    +   ++ k d+W lGlvi  +   k Pl l  ++ + 
   CCD22355.1 402 NYKIIHRDIKPSNILVNSKGQVKICDFGV----SKKLI-NSIADTFVGTSTYMSPER---IQGNVYSTKGDVWSLGLVIIELVTGKFPLSLNNNNSNH 491
                  589************************85....44444.777777776666666544...3445788899******************9998877665 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.5e-05       0.1      96     150 ..     373     429 ..     358     443 .. 0.81
   2 ?   -1.2   1.3      0.44   1.3e+03      16      53 ..     588     624 ..     577     636 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
                 GBHHHCG-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1  96 pklkdvee.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvs 150
                  klk+  + +  +++l + vl+ +  ly++ +++H D+   N+lv+++ +v i D++
  CCD22355.1 373 SKLKNWFNdSLILSKLSYAVLNGLDYLYTNYKIIHRDIKPSNILVNSKgQVKICDFG 429
                 566666633667788999999************************999899999997 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.44
                 EEE-S---SS-H.HHHCTTTSTTSTCG--GS-HHHHHHH CS
        RIO1  16 KiyktstteFkk.rkkyvsgekrfkdrksktnprklvkl 53 
                 K+y  + + + k +k+y++++++fk++   +++ k  k 
  CCD22355.1 588 KLYNKEFKMWCKmIKSYIKQDRQFKRE--DIERAKFEKR 624
                 556555555555478888888888755..3444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1723  (0.0961013); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 4212.27
//
Query:       CCD22356.1  [L=107]
Description: hypothetical protein NDAI_0A01980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 798.38
//
Query:       CCD22357.1  [L=529]
Description: hypothetical protein NDAI_0A01990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-09   36.9   3.4      0.037   14.9   0.0    5.3  5  WD40         WD domain, G-beta repeat
     0.0037   17.5   0.0        7.4    6.9   0.0    3.2  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.15   11.4   0.0       0.31   10.4   0.0    1.4  1  APH_6_hur    Aminoglycoside/hydroxyurea antibiotic resistance


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0         1   6.2e+03      22      38 .]     212     228 ..     201     228 .. 0.78
   2 ?    4.2   0.0     0.015        89      18      35 ..     259     276 ..     243     279 .. 0.69
   3 !   14.9   0.0   6.3e-06     0.037      13      38 .]     347     373 ..     336     373 .. 0.88
   4 !   11.6   0.1   6.7e-05       0.4      12      38 .]     403     429 ..     388     429 .. 0.80
   5 ?    2.0   0.0     0.076   4.5e+02      16      35 ..     498     517 ..     482     520 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1
                 SSEEEEEETTSEEEEEE CS
        WD40  22 gawlasGsdDgtvriWd 38 
                 ++++++G+  g+v +W+
  CCD22357.1 212 KKLVVAGDISGNVGLWN 228
                 45688888899999997 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.015
                 EETTSSEEEEEETTSEEE CS
        WD40  18 fspdgawlasGsdDgtvr 35 
                 f+ +++ l++ s+Dg++r
  CCD22357.1 259 FPTNSSKLLATSYDGSIR 276
                 4455555554566****9 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 6.3e-06
                 EEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40  13 vtslafspdgaw.lasGsdDgtvriWd 38 
                 + s++ +p+ ++ +a+Gs D+t+++Wd
  CCD22357.1 347 IGSMSINPNRPYeIATGSLDRTLKLWD 373
                 7788999*****99************9 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 6.7e-05
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 sv+++++sp  + l++ ++D t+r++d
  CCD22357.1 403 SVSAVSYSPTDNTLVCNGYDDTIRLFD 429
                 399***********96478******98 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.076
                 EEEETTSSEEEEE.ETTSEEE CS
        WD40  16 lafspdgawlasG.sdDgtvr 35 
                 ++++p  +w++ G s  g+v 
  CCD22357.1 498 VSWHPLRNWIVGGnS-SGKVF 517
                 67*******995544.66665 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.62   3.7e+03      71      71 ..     284     284 ..     259     351 .. 0.59
   2 !    6.1   0.0    0.0022        13      35      69 ..     398     432 ..     383     448 .. 0.88
   3 !    5.9   0.0    0.0027        16      40      79 ..     454     493 ..     441     502 .. 0.76
   4 !    6.9   0.0    0.0012       7.4       3      66 ..     460     520 ..     458     526 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.62
  ANAPC4_WD40  71 k 71 
                  +
   CCD22357.1 284 E 284
                  2 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0022
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                   ++  +v++++++p ++ L+    d ++rl+d+ +
   CCD22357.1 398 YDSRLSVSAVSYSPTDNTLVCNGYDDTIRLFDVTK 432
                  467789**************************976 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0027
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  ++ + ++kp+ +++a+a    ++ ++++  +++ h  +++
   CCD22357.1 454 SILKARFKPNKNVFAIANMSRAIDIYNSDGQQLAHLNTAT 493
                  566778999999****999999999999777766655444 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0012
  ANAPC4_WD40   3 wcptmDLiAlatedgellvfRlngqrvwtleedkedsevr.sLaWkpdgklLavaysdgevrlld 66 
                  + p+++ +A+a+ +  + ++  +gq++ +l    +  +v   ++W+p  + ++ + s g+v l++
   CCD22357.1 460 FKPNKNVFAIANMSRAIDIYNSDGQQLAHL----NTATVPaVVSWHPLRNWIVGGNSSGKVFLFQ 520
                  678888999999999999999999999998....3334431578999999999888888887775 PP

>> APH_6_hur  Aminoglycoside/hydroxyurea antibiotic resistance kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   5.1e-05      0.31      50      95 ..      98     143 ..      90     147 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.1e-05
   APH_6_hur  50 LvwwgGdGavrvleedeeesalLLErlsgersltslvaegdDdeAt 95 
                 L   +G+G v++    e++++l   ++ g++ l++l++egdDd+A+
  CCD22357.1  98 LFKLNGNGDVKLESSPEDDQVLKDMKVIGDVKLSDLLKEGDDDNAL 143
                 55679*****************988999****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1137  (0.0634168); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3653.25
//
Query:       CCD22358.1  [L=413]
Description: hypothetical protein NDAI_0A02000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-40  138.2   0.0    2.9e-40  136.9   0.0    1.7  2  Cyclin_N  Cyclin, N-terminal domain
    3.6e-34  117.4   1.8    6.5e-33  113.4   0.0    2.5  2  Cyclin_C  Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9   0.0   3.2e-44   2.9e-40       1     126 [.     159     284 ..     159     285 .. 0.99
   2 ?   -3.1   0.0      0.67     6e+03     100     120 ..     352     372 ..     349     373 .. 0.76

  Alignments for each domain:
  == domain 1  score: 136.9 bits;  conditional E-value: 3.2e-44
                 HHHHHHHHHHCHTS-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHH CS
    Cyclin_N   1 dilknlieqelkflpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlv 99 
                 di+ +l + e+kf+p+++y+  qpe+++e+R+++i wlv+ ++k +l petl+l++n++dRflsk+ ++ +k+ql++a++L++AaK+eei+ p+l+d+v
  CCD22358.1 159 DIFPYLNTLENKFKPDSNYMAYQPEIEWEHRRTIIGWLVQFHSKCRLLPETLYLTINIMDRFLSKQTISISKFQLIAAASLFIAAKYEEINWPSLKDIV 257
                 7999*********************************************************************************************** PP

                 HHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N 100 yitdeafteeeilemErliLetLnfdl 126
                 y+ ++a+t++e+l +Er iL +L f++
  CCD22358.1 258 YMLNNAYTKQEVLAAERIILGELGFEI 284
                 *************************98 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.67
                 HHTTTSS-HHHHHHHHHHHHH CS
    Cyclin_N 100 yitdeafteeeilemErliLe 120
                 +i  + +t+++il + rliLe
  CCD22358.1 352 HIYYSGYTQDQILPLARLILE 372
                 555567999999999999987 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4     0.014   1.2e+02       4      58 ..     193     245 ..     190     272 .. 0.71
   2 !  113.4   0.0   7.2e-37   6.5e-33       1     118 [.     287     401 ..     287     402 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.014
                 HHHHHHH.HCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHH CS
    Cyclin_C   4 lsFlrrf.lkaadasedselrtlakylleltlldydflsyppSliAaaalllarst 58 
                 + +l  f +k+       e++ l+  +++  l   +    +  liAaa+l++a + 
  CCD22358.1 193 IGWLVQFhSKC--RLLP-ETLYLTINIMDRFLSKQTISISKFQLIAAASLFIAAKY 245
                 55666665565..3334.77777777777777777777778889*******99886 PP

  == domain 2  score: 113.4 bits;  conditional E-value: 7.2e-37
                 --HHHHHHHHHCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC---HHHHHHHHHHHHHHHHHHHGSS-- CS
    Cyclin_C   1 ptplsFlrrflkaadasedselrtlakylleltlldydflsyppSliAaaalllarstlnspewtetlehytgyskedlkpcvelilellssapssklq 99 
                 p p+sFlrr++ka+++  ++e+rtl+ky+le+tl++ +++s +pS++Aa+a+ll++ +l++++w+ ++ +y+gy+++++ p+++lile++ + p ++++
  CCD22358.1 287 PGPMSFLRRISKADNY--EYEIRTLSKYFLESTLMEPTLVSALPSWLAAGAYLLSQIILGYEDWSLAHIYYSGYTQDQILPLARLILENC-RDPGTHHR 382
                 88***********888..999*********************************************************************.99****** PP

                 HHCCCCTCGGGCCCGGS-S CS
    Cyclin_C 100 avrrkyssskfhkvstlse 118
                  +++kyss++ h++++l++
  CCD22358.1 383 EIWEKYSSRQQHCSAQLVS 401
                 ************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3099.29
//
Query:       CCD22359.1  [L=875]
Description: hypothetical protein NDAI_0A02010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-46  158.9   0.0    2.8e-46  157.9   0.0    1.5  1  MutS_V    MutS domain V
    3.9e-22   79.4   3.5    3.9e-22   79.4   3.5    2.2  2  MutS_III  MutS domain III
     0.0074   16.6   0.2      0.048   14.0   0.1    2.4  2  MutS_IV   MutS family domain IV
  ------ inclusion threshold ------
      0.016   15.2   0.2       0.97    9.3   0.2    2.7  2  NACHT     NACHT domain
       0.16   11.7   0.0       0.46   10.3   0.0    1.7  1  AAA_29    P-loop containing region of AAA domain
       0.41   10.7   3.7        1.7    8.7   0.0    3.2  3  AAA_14    AAA domain


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.9   0.0   9.4e-50   2.8e-46       2     185 ..     604     808 ..     603     811 .. 0.94

  Alignments for each domain:
  == domain 1  score: 157.9 bits;  conditional E-value: 9.4e-50
                 EEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHHHH CS
      MutS_V   2 litGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlaial 100
                 ++tG+n +Gk ++l q++liv la+iG+fvpa++a+i+++dki+tR+ + D++++++stF  +   +a+ l+ ate+sl+++DE G+Gt + dG ++  
  CCD22359.1 604 VLTGANASGKTVFLTQNGLIVYLAHIGCFVPADSAKIGLIDKILTRIRTRDTISRQESTFQRDSFQMAKCLSLATERSLILVDEFGKGTDVIDGPSLFA 702
                 89************************************************************************************************* PP

                 HHHHHHHHTT--EEEEE.ES-GGG...GGHHHHSTTEEEEEEEEE.................EETTEEEEEEEEEES--SS--HHHHHHHTT--HHHHH CS
      MutS_V 101 avaeyllekikaktlfa.tHyhel...tklaekleevknlhlavk.................eeeedivflykvkegaaeksyGikvaklaglPesvve 178
                  ++ +l++  ++  +++ tH+he+   t l ++++ vk++  +v                   e+  i+fly++keg+a++s+G+  ak+ g+ +++v+
  CCD22359.1 703 GIIAFLSKLRRCPRFLScTHFHEIfrdTILPTTMPGVKHYATEVMldgkvpddslhlasekdLEDAGIMFLYRIKEGIAKQSFGVYCAKVCGIKTEIVR 801
                 ************877644******555567899999**999999999***********987767789******************************** PP

                 HHHHHHH CS
      MutS_V 179 rArevlk 185
                 rA+e  +
  CCD22359.1 802 RAQELSA 808
                 **99866 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.1   3.2e+03     154     167 ..     101     114 ..      38     179 .. 0.58
   2 !   79.4   3.5   1.3e-25   3.9e-22       2     191 .]     218     540 ..     217     540 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxx RF
    MutS_III 154 aleqelfqelleev 167
                 + ++++++++++e+
  CCD22359.1 101 ESLHNAIENICKEI 114
                 33333344444333 PP

  == domain 2  score: 79.4 bits;  conditional E-value: 1.3e-25
                 HHHHTTSSS-.TTS....SSSS...-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHH.T....TT.HHHHHHHHTT---HHHHHHHHHTT CS
                 xxxxxxxxxx.xxxx...xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   2 TlrnLeilen.lrgg...skeg...sLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVee.le..neelreelrellrrlpDleRllsrislg 90 
                 ++ +L+i+ + +++g    ++g   s+l++ld+T+++  ++lL++wl +Pl ++  I+ Rl++Ve  le  n+ + e+lre+l+ lpDl R+l+ i +g
  CCD22359.1 218 SIAALQIFPSiKKTGhdkMQKGacfSILELLDHTSSSLATKLLKSWLASPLSSKVLIEGRLKVVEIlLEknNNIVYEDLREQLKGLPDLFRILNAIRNG 316
                 6789999876344444432344788****************************************855566788899999******************9 PP

                 ---HHHHHHHHHHHHHHHTTTTT---SSTHHHHH..............HHHH...HHHHHHB-SS--SSGGGS--B-T..................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxx...xxxxxxxxxxxxxxxxxxxxxxx..................... RF
    MutS_III  91 kakardlkallealkaleelvallekeklaesee..............esla...elleeaideeplalekegedlra..................... 151
                 k + +  ++ll+ l+++ ++  l +  k ++++                  +   + +e++id  +++++k + + +                      
  CCD22359.1 317 KTTLSTWLSLLSFLRKAIDIFYLVKLLKYDKDSMnifeqisqridpaeM--ElllRKIETTIDIRTSKETKTVTIFDGvnealdecrhvyneleiiltd 413
                 9997775555555554444444443333322222445555555555332..233599999999999999999999999********************* PP

                 .......................................................................................HHHHHHHHHHHH CS
                 .......................................................................................xxxxxxxxxxxx RF
    MutS_III 152 .......................................................................................iealeqelfqel 163
                                                                                                        i +le e++q  
  CCD22359.1 414 vakcaeqsllqllrersniatllgttvnavyipqlgylvtlsssleevtsiaaslkweemfrtttniyfknedviqmdekygdiygaIIDLEVEILQGS 512
                 ***************************************************************************************9*********** PP

                 HHHHHHTHHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 164 leeveealerlrrlaealaeLDvllSlA 191
                 +e+v +  + l + +++la+L vl+S+A
  CCD22359.1 513 QENVLAIQSSLTEYCNLLAQLEVLMSFA 540
                 ****7767*******************9 PP

>> MutS_IV  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3     4e+03      33      59 ..      36      66 ..      10      75 .. 0.63
   2 !   14.0   0.1   1.6e-05     0.048       1      88 [.     392     496 ..     392     498 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
                -.......TTBEECCCSSSEEEEEE-TCCCTTT- CS
     MutS_IV 33 i.......kslkveynkvlGyylevtrseakkvp 59
                +       k+lk+ +     y+l+++++ a+++p
  CCD22359.1 36 CsvlnchtKTLKILNQD---YLLQLPQTMAETAP 66
                43333344555555444...77777777666665 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.6e-05
                 TTSHHHHHHHHHHHHHHHHHHHHHCCCCCCCT-.............TTBEECCCSSSEEEEEE-TCCCTTT--.....SEEEEEECTCEEEEECCCHHH CS
     MutS_IV   1 gfdeeLdelrdrleelekeleeleekereklgi.............kslkveynkvlGyylevtrseakkvpk.....efirlqtlknseryttaelkk 81 
                 g++e Lde r  ++ele  l++++++ ++ l +              +++  y+++lGy++ ++ s  ++v +     +++++  +   +++ ++++++
  CCD22359.1 392 GVNEALDECRHVYNELEIILTDVAKCAEQSLLQllrersniatllgTTVNAVYIPQLGYLVTLSSSL-EEVTSiaaslKWEEMFRTTTNIYFKNEDVIQ 489
                 6899*****************99999887443345555555999999999**************887.3333334589********************* PP

                 HHHHHHH CS
     MutS_IV  82 leaelle 88 
                 +++++++
  CCD22359.1 490 MDEKYGD 496
                 ****987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2   0.00032      0.97      67     131 ..     370     458 ..     315     483 .. 0.77
   2 ?    3.1   0.0     0.027        80       1      18 [.     601     618 ..     601     688 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00032
                 SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH.................................HHHHHCTTTTT--EEEEEEECCC CS
       NACHT  67 apvsevwavllelperlLlilDglDelvtdlgq........................kekqpvrtlLselirkkllpeasllltvrpra 131
                 +++++ + ++++ +++++ i+Dg++e+ ++ ++                         e+ ++ tlL++ +++ ++p+   l+t++++ 
  CCD22359.1 370 RKIETTIDIRTSKETKTVTIFDGVNEALDECRHvyneleiiltdvakcaeqsllqllRERSNIATLLGTTVNAVYIPQLGYLVTLSSSL 458
                 344459999**************98888877778888*******999999999999999999999999999999999999999999875 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.027
                 SCEEEEC-TTTCHHHHHH CS
       NACHT   1 rlvilqGeaGsGKTtLlq 18 
                 r+v+l+G++ sGKT++l 
  CCD22359.1 601 RIVVLTGANASGKTVFLT 618
                 689*************96 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.46      10      39 ..     587     617 ..     583     623 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00015
      AAA_29  10 gtfdghtieidlkg.atlltGpsGsGKSTll 39 
                 g fd++ +  + k  +++ltG++ sGK+ +l
  CCD22359.1 587 GNFDDENWFQTNKKrIVVLTGANASGKTVFL 617
                 789995555555555************9876 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.95   2.8e+03      34     101 ..     116     185 ..      96     199 .. 0.56
   2 ?    1.3   0.1      0.11   3.2e+02      14      77 ..     316     416 ..     312     468 .. 0.56
   3 ?    8.7   0.0   0.00058       1.7       2      23 ..     600     621 ..     599     695 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.95
      AAA_14  34 lyinldderdkkladpekllelileklkeekktylflDEiqevpewekalkslvdeg...knldvivtGSn 101
                   i+l+  ++ k++++ +lle+   k  +  ++ l+ D  q v +   +++ +++++    +ld i t  +
  CCD22359.1 116 CRIELQGAETFKKSKELDLLEFQSCKSAT-FREELIKDDLQSVGTTNATVNCIINNYnkhAELDDISTNTS 185
                 55555555554444332333333333222.33347888888888888888888886622234455555444 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.11
      AAA_14  14 GKTtllkqlikell...vkkesilyi.nldderdkkladpe........kllelileklke........ekktylflDEiqev................ 76 
                 GKTtl   l    l    k+ +i+y+ +l + ++++++ +e          +el+l+k+++        e kt+ ++D + e+                
  CCD22359.1 316 GKTTLSTWLSL--LsflRKAIDIFYLvKLLKYDKDSMNIFEqisqridpAEMELLLRKIETtidirtskETKTVTIFDGVNEAldecrhvyneleiilt 412
                 77777543322..22343444555542333333333333322222223322333333322245566677788889999888775555555555555555 PP

      AAA_14  77 ...p 77 
                    +
  CCD22359.1 413 dvaK 416
                 5554 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00058
      AAA_14   2 rkilvitGaRrvGKTtllkqli 23 
                 ++i+v+tGa  +GKT++l q  
  CCD22359.1 600 KRIVVLTGANASGKTVFLTQNG 621
                 78***************98853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (875 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5955.66
//
Query:       CCD22360.1  [L=628]
Description: hypothetical protein NDAI_0A02020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-29  101.6  11.0    2.5e-29  101.6  11.0    2.3  2  Sas10       Sas10 C-terminal domain
     0.0003   21.4   0.3     0.0003   21.4   0.3    3.3  3  Sas10_Utp3  Sas10/Utp3/C1D family
  ------ inclusion threshold ------
       0.06   13.3   1.0       0.34   10.9   0.5    2.6  2  DUF1179     Protein of unknown function (DUF1179)


Domain annotation for each model (and alignments):
>> Sas10  Sas10 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.4         3   1.8e+04      24      34 ..     522     532 ..     517     535 .. 0.59
   2 !  101.6  11.0   4.2e-33   2.5e-29       2      74 .]     553     626 ..     552     626 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3
       Sas10  24 enrnpRvkkrk 34 
                 +++n+R++  k
  CCD22360.1 522 NKKNARTQAHK 532
                 45566655444 PP

  == domain 2  score: 101.6 bits;  conditional E-value: 4.2e-33
       Sas10   2 dgkRkityqIekNkGLtpkRkkenrnpRvkkrkkYekakkklksqvaevk.keegkYsGektGIksnvvkSvkL 74 
                 dgkR+i+yqI+kNkGLtpkRkk+nrn+Rvkkrkk+eka+kklks +a++   ++g Y+GektGIk+n+++Svk+
  CCD22360.1 553 DGKRAINYQILKNKGLTPKRKKDNRNSRVKKRKKFEKAQKKLKSVRAVYSgGQSGVYEGEKTGIKKNLTRSVKF 626
                 9*************************************************77777*****************97 PP

>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.5       1.1   6.8e+03       5       5 ..     196     196 ..     152     226 .. 0.58
   2 !   21.4   0.3     5e-08    0.0003       3      85 ..     232     306 ..     230     308 .. 0.85
   3 ?   -3.5   0.1       2.9   1.7e+04      29      47 ..     322     340 ..     310     342 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
  Sas10_Utp3   5 s 5  
                 +
  CCD22360.1 196 Q 196
                 1 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 5e-08
  Sas10_Utp3   3 slsksldelqeslepllskakaeekkslsdeklsegisllslKnelllaYllnllly..lllk.lsg....velkdhpvvkeLvrlRvyl 85 
                 +lsk+l +l++ l +l++k            ++se     +lK  +l +Yl +++ y  +ll  l++      +kdhpv+++++  ++++
  CCD22360.1 232 PLSKELASLSDVLVDLKTK------------EESE---TTKLKIMALCTYLGTISSYfgILLHeLKNnddfFTMKDHPVMESILTSKEVW 306
                 589999*********9993............2345...889****************885655588899996689************999 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.9
  Sas10_Utp3  29 slsdeklsegisllslKne 47 
                 + +d++++e i+l+ +++e
  CCD22360.1 322 AMEDQEQTEDIPLEATELE 340
                 2233555666888887765 PP

>> DUF1179  Protein of unknown function (DUF1179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       0.8   4.8e+03      51      98 ..       8      55 ..       2      62 .. 0.73
   2 ?   10.9   0.5   5.8e-05      0.34      71      95 ..     331     357 ..     308     370 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.8
     DUF1179 51 edivkesskqakPtaqtPPaktPlekkgdveedtLanvkslPpeksek 98
                ++  k ssk + P +  P     +++ ++ +e+ L +  +l  ++ ++
  CCD22360.1  8 NNNRKGSSKGSDPDTVDPYGLNEVDEFASKKEKLLLEQSTLSNQRNDD 55
                455678899999988888888888888888888888877776666655 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.8e-05
     DUF1179  71 ktPlekk..gdveedtLanvkslPpek 95 
                  +Ple +   +++ed Lanvk+lP + 
  CCD22360.1 331 DIPLEATelEEMDEDMLANVKTLPNNG 357
                 5788876225799**********8753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2307  (0.128674); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.45
# Mc/sec: 4148.88
//
Query:       CCD22361.1  [L=417]
Description: hypothetical protein NDAI_0A02030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-21   77.8   7.9    1.1e-21   77.8   7.9    4.1  4  RNA_pol_Rpc4  RNA polymerase III RPC4
  ------ inclusion threshold ------
       0.19   11.6   4.4       0.17   11.7   1.5    2.1  2  Sigma54_CBD   Sigma-54 factor, core binding domain


Domain annotation for each model (and alignments):
>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   1.1      0.04   3.6e+02      22      65 ..      29      59 ..       6      96 .. 0.38
   2 ?   -1.7   0.1       0.4   3.6e+03      47      47 ..     157     157 ..     122     201 .. 0.49
   3 ?   -1.5   0.3      0.35   3.1e+03      41      61 ..     215     235 ..     191     259 .. 0.39
   4 !   77.8   7.9   1.2e-25   1.1e-21       2     148 ..     298     415 ..     297     416 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.04
  RNA_pol_Rpc4 22 saaeddkseaesqsaekakaeeeskaekasgaeaeekkskkkss 65
                  s             ++++++ e+s+ + + g++a++k ++kk+ 
    CCD22361.1 29 S-------------RRTKEEREASEPKLNLGNDAANKHDNKKKF 59
                  1.............111111111111111111111111111111 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.4
  RNA_pol_Rpc4  47 a 47 
                    
    CCD22361.1 157 Y 157
                   1 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.35
  RNA_pol_Rpc4  41 aeeeskaekasgaeaeekksk 61 
                   ++++  ++++s  + + k+++
    CCD22361.1 215 ESTSVPTTRESTPAIAIKEDP 235
                   111111111111111111111 PP

  == domain 4  score: 77.8 bits;  conditional E-value: 1.2e-25
  RNA_pol_Rpc4   2 grlylfQfPpllPslkqkavsaaeddkseaesqsaekakaeeeskaekasgaeaeekkskkksskkkkkkkskalklkslpeGviGkLlvhkSGkve 98 
                   +r+++fQ+P++lP ++                     +   +++++++++++++++k +k          ++ ++ +++  +G++G+ +vhkSGk +
    CCD22361.1 298 NRFMVFQLPTTLPLFE---------------------DLLLQKQEGSVEEKEKKNKK-EKV---------EKDTHVPQEELTGRVGSVRVHKSGKLT 363
                   68999*********99.....................11222222222222222211.111.........112223334456*************** PP

  RNA_pol_Rpc4  99 lrlGgillevspGaqpsFlqevvvveeedeke..kealvLGkvnkkfvvtPd 148
                   +++G++ +++ +Ga+++Flq+vv+++e++ +e  +++  LG++++++vvtP 
    CCD22361.1 364 MKIGNVVMDLGRGAETTFLQDVVSLNEATDEEgaSAVELLGRIDGRVVVTPR 415
                   *************************9965555457799*************7 PP

>> Sigma54_CBD  Sigma-54 factor, core binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1     0.076   6.9e+02     101     139 ..     183     223 ..     178     243 .. 0.76
   2 ?   11.7   1.5   1.9e-05      0.17      88     161 ..     251     324 ..     237     338 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.076
  Sigma54_CBD 101 ellakkdlkkl..akklglseeelqealelIkkLnPkPgre 139
                  + l++k++++l   + +++ +e+++++ ++I++ +  P  +
   CCD22361.1 183 DALQAKRIEQLfpVRPVRIRHEDIEQVKKEIQESTSVPTTR 223
                  56777788888555778889999999999999988888655 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 1.9e-05
  Sigma54_CBD  88 lQlkaealieehle.llakkdlkklakklglseeelqealelIkkLnPkPgre..fsseeaeyivPDvivekeegel 161
                  +Qlk   l + hle +l + d +++a++l+l   ++q++l++Ik+L++kP r   f+  ++  +  D++++k+eg++
   CCD22361.1 251 IQLK---LKDMHLEnELHSIDAEEVAEELKLLTIDYQQILSKIKRLDNKPNRFmvFQLPTTLPLFEDLLLQKQEGSV 324
                  4553...34555553799999*****************************887333344446667788888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1403  (0.0782531); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 2798.46
//
Query:       CCD22362.1  [L=737]
Description: hypothetical protein NDAI_0A02040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-192  641.3  25.3   1.3e-192  641.1  25.4    1.0  1  APG9       Autophagy protein Apg9


Domain annotation for each model (and alignments):
>> APG9  Autophagy protein Apg9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  641.1  25.4  7.4e-197  1.3e-192       1     479 []      51     532 ..      51     532 .. 0.99

  Alignments for each domain:
  == domain 1  score: 641.1 bits;  conditional E-value: 7.4e-197
        APG9   1 wkwanvenLDaFlqevYeYyqgkGllcivlsrvlelltlvfvvvfstfLllcvdysklleeksekvslsdvivekcvs.klslltllllvlfllywvlk 98 
                 wkwanvenLD Flq+vY+Yy g+G++civl+++l+++tl+fvv++st+L +c+dys++    s++++l+d+ +++c++ ++++++++ll+lf+++++lk
  CCD22362.1  51 WKWANVENLDVFLQDVYDYYLGNGFTCIVLEKALNIITLIFVVYISTYLGYCIDYSHI----STSKRLEDIKIDQCYNnNITGFIKVLLWLFYIFIFLK 145
                 89********************************************************....89**************9******************** PP

        APG9  99 llkflldlrrlleirsfytelLkisdedlqtisWqevverlvelqkenaltakkk......eldaldianrimRkeNYliAlinkdiLdltlplPllge 191
                 ++++++d+++l++i++fy++lL++sd++lqti+Wq+++e+++ l+++nalt++        ++da+d+anrimRk+NYliAl+n ++L l+lp+Pl+++
  CCD22362.1 146 MAQLYFDVKNLTDIHNFYNYLLNVSDNELQTIPWQNIIEQIMFLKDQNALTSNVVamkaknRIDAHDVANRIMRKDNYLIALYNSEVLYLSLPIPLFRT 244
                 ***************************************************6555666777************************************99 PP

        APG9 192 rqlltktlewnlelcllnflFdekgqlreeflkekkrkelaeeLrkrfllagvlnlllaPfiviylllyfffryaeelkknpsslgsRrwsplAewklR 290
                 + +ltktlewn++lc++ f+F+e+g +++ flke++r+ l+eeLrkrf+lagvln++l+Pf+v+y++l++ffry++e+k++p+sl++R+++p+Aewk+R
  CCD22362.1 245 N-ILTKTLEWNINLCITGFVFNESGFVKQMFLKESQRQYLSEELRKRFMLAGVLNIILSPFLVTYFILLYFFRYFNEYKTSPGSLSARQYTPMAEWKFR 342
                 8.************************************************************************************************* PP

        APG9 291 efNELpHlfeaRlnrsyklAskYldqfpseklaiiakfvafvagsiaavlvvlslldeelllefei.egrtvlfyltvlgvilavarslipeenevfdp 388
                 e+NEL H+f++Rl  s+++A+kY+dqfp+ek+++i kfvaf++gs++a+l++l+l+d+e++++fei ++++v+f+ t++g+i++v+r+++++e+++f+p
  CCD22362.1 343 EYNELYHIFKKRLGLSMNVANKYIDQFPKEKTNLILKFVAFLSGSFIAILATLTLVDSENFINFEItNDKSVVFFFTIFGAIWTVSRNAVSQEYNTFNP 441
                 *************************************************************************************************** PP

        APG9 389 eallrevlehtHYlpdeWkgklhteevkkefselfqlkivilleellsvlltPfiLlfslpksaeeivdffreftvevdgvGdvcsfAvfd 479
                 e++ re++++tHYlp+eWk+ +hteevk++f++l++l+ivill+el+s++ltPf+L+f lp+sae+ivdffre + +vdg+G+vc++A+f+
  CCD22362.1 442 EETVRELASYTHYLPKEWKNAYHTEEVKNDFCKLYNLRIVILLRELTSLVLTPFVLWFALPRSAENIVDFFREASTYVDGLGYVCKYAMFE 532
                 *****************************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4754.69
//
Query:       CCD22363.1  [L=617]
Description: hypothetical protein NDAI_0A02050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-08   33.9  39.1      5e-07   29.0  38.1    2.5  1  MFS_1     Major Facilitator Superfamily
    6.9e-06   25.2  10.6    6.9e-06   25.2  10.6    3.4  5  Sugar_tr  Sugar (and other) transporter
  ------ inclusion threshold ------
      0.029   14.8   0.1      0.061   13.8   0.1    1.5  1  Goodbye   fungal STAND N-terminal Goodbye domain


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0  38.1   8.3e-11     5e-07      18     352 ..      81     490 ..      59     491 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 8.3e-11
       MFS_1  18 alplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgagalfpagaaliadwfpk 116
                 ++    ++++  ++s +++++ + ++ +a++++ ++r +d fGr ++++++++++++g+++ + a++++  +v+ ++ +lg +a++ a  +l+ad ++ 
  CCD22363.1  81 TFQTEATSSYK-NHSLMSTVTCITTVISAAGQIAYARAADIFGRTSLVFTAIFFYVIGTVVESQATNITRYAVGACFYSLGHAAIVLALEVLAADFSNL 178
                 33334555666.78999999999***********************************444442388888****************************9 PP

       MFS_1 117 eergraigllsagfslGailgpllggllasslg..Wravfyilaivsllafv.lfllllpeepperkrkspkeee........................ 188
                 + r +a +  ++      ++   ++g ++s +g  W++   + ai++ ++++ l ++l+  ++ +  + + +e++                        
  CCD22363.1 179 NYRILASAAPML----PNVINTWISGNITSDIGdhWQWGIGMWAIIFPVCCIpLLFCLFHMRYLAQYKHNRRELRsfstippnmtrmeyfidvffwrld 273
                 999888844444....44777788888888888899999999999999999987778887777777777777777888889999*************** PP

       MFS_1 189 ....................................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylq 235
                                                                      + +++pl+p w +++ + v   llial+l f +++  +t+  + l 
  CCD22363.1 274 ilglllgviffacvlipftlaakatdkwksasiivpevigwlvalplyifweWKFAKFPLTP-WNLVKDRGVYGGLLIALFLDF-AYYVQSTYKYTVLL 370
                 *************************************************9999999999999.********9977777777775.88887777777788 PP

       MFS_1 236 evlglsglllaglllallalvgailallagrls.drlgr.rrrlllallllllaalglallavt.ssavllllvlvliGfglgfv.fpsllalasdlap 330
                   ++ + +l a+ +  ++ +vg+i a l+g ++ ++l r + +++++++  ++++ +l+      + +v +++++ l+Gfg gf  fp+ +++ +  + 
  CCD22363.1 371 VSFDTT-VLAATRTNNMFTFVGVITANLLGIFVaKKLRRtKGFIFFGISMYIVSTGLLYRYRIGaHAKVGTIVACCLLGFGNGFLkFPARASIQAAAYT 468
                 999999.888888888888888888777777774554442557777777777777777777777899******************65555555555557 PP

       MFS_1 331 peeagtasglfntagslggalg 352
                  ++ + +++lf  +gs+g  +g
  CCD22363.1 469 HKNLAIITSLFLALGSIGEGFG 490
                 7888999999999999998776 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.25   1.5e+03      10      24 ..      34      48 ..      28      58 .. 0.73
   2 !   25.2  10.6   1.1e-09   6.9e-06       9     202 ..      58     242 ..      51     264 .. 0.84
   3 ?   -3.3   0.1       0.5     3e+03     321     353 ..     278     307 ..     272     309 .. 0.47
   4 ?   -2.2   8.2      0.23   1.4e+03      30     128 ..     354     463 ..     341     491 .. 0.62
   5 ?   -0.6   0.1     0.077   4.6e+02      21      69 ..     452     497 ..     447     503 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.25
                HHHHHHHHCGGGTHH CS
    Sugar_tr 10 llfgYdtgvigaflt 24
                 +++Ydtgvi+  ++
  CCD22363.1 34 SQINYDTGVINIEVY 48
                7899******97555 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 1.1e-09
                 HHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGG CS
    Sugar_tr   9 gllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevliv 107
                  llf + +++  + +tl k ++  ++++++ss++   +l++ +++i+ v++++G++    ++d+fGR +   +a++++vig+v+   a+   ++  ++v
  CCD22363.1  58 RLLFFFSIFLTTYCYTLDKRVRSTFQTEATSSYK-NHSLMSTVTCITTVISAAGQIAYARAADIFGRTSLVFTAIFFYVIGTVVESQAT---NITRYAV 152
                 48999*******************9999999998.5*****************************************************...9****** PP

                 GHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT CS
    Sugar_tr 108 gRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekg 202
                 g  +  +g  ++     ++++ ++  ++R        l  +   + + i+g ++++++++++w i ++  ++p   + +l++++    ryl + +
  CCD22363.1 153 GACFYSLGHAAIVLALEVLAADFSNLNYRILASAAPMLPNV---INTWISGNITSDIGDHWQWGIGMWAIIFPVCCIPLLFCLFH--MRYLAQYK 242
                 ************************99999766666555554...45667788889999988888888877777654444444444..66765554 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.5
                 HHHHHHHHHHHHHHH..HHHHTTSS...CHHHH CS
    Sugar_tr 321 llGaagmaicfvilgivalllvakskaasivai 353
                 llG+++ a++++ +   +l+ +a++k++s  +i
  CCD22363.1 278 LLGVIFFACVLIPF---TLAAKATDKWKSASII 307
                 44444433333333...4445555555555444 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.23
                 HTSTT--SHHHHHH...........HHHHHHHTHHHHHHHHH.HHHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTT.SS-TGGGGGHHHHHHHHH CS
    Sugar_tr  30 knfglsksksskee........ssvlsglivsiflvGaiiGs.lfagllgdrfGRkkslli.aavlfvigavlqaaakgk.nsvevlivgRvlvGigvG 117
                  +f ++++++ k++        + +  + + ++f ++++i++ l++ ++++++ R k++++ ++ ++++++ l +    +  +    iv+  l+G+g G
  CCD22363.1 354 LDFAYYVQSTYKYTvllvsfdtTVLAATRTNNMFTFVGVITAnLLGIFVAKKLRRTKGFIFfGISMYIVSTGLLYRYRIGaHAKVGTIVACCLLGFGNG 452
                 555556666655666676776444555666667666665555155556778889999999967788888888877766663333345666788888888 PP

                 HHHHHHHHHHH CS
    Sugar_tr 118 lasvlvPmyis 128
                 +    +   i+
  CCD22363.1 453 FLKFPARASIQ 463
                 77655555554 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.077
                 GTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHH CS
    Sugar_tr  21 afltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagll 69 
                 +fl++++ a+ + +  ++ +++++++ ++l++++ ++G+ +Gs +ag +
  CCD22363.1 452 GFLKFPARASIQAA--AY-THKNLAIITSLFLALGSIGEGFGSSVAGAI 497
                 55555553222222..22.233367899999999999999999999864 PP

>> Goodbye  fungal STAND N-terminal Goodbye domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1     1e-05     0.061      36      91 ..      80     135 ..      46     150 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1e-05
     Goodbye  36 aekdkfeefrekkeklkealkkilspiqllggiaaqgasmaFgPaslcfnAvsyLi 91 
                 +  +   +++ k ++l +++++i ++i+  g+ia   a+  Fg +sl+f+A+++ +
  CCD22363.1  80 STFQTEATSSYKNHSLMSTVTCITTVISAAGQIAYARAADIFGRTSLVFTAIFFYV 135
                 44444455567888899999999999999999999999999***********8754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       903  (0.0503653); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4231.37
//
Query:       CCD22364.1  [L=815]
Description: hypothetical protein NDAI_0A02060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.8e-164  547.4  81.6   1.5e-100  337.8  26.9    2.3  2  Nop14     Nop14-like family
  ------ inclusion threshold ------
      0.054   13.3   1.3       0.14   11.9   0.1    2.2  2  DUF4018   Domain of unknown function (DUF4018)


Domain annotation for each model (and alignments):
>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.7  53.7   1.7e-68   1.5e-64      42     365 ..      68     369 ..      63     376 .. 0.74
   2 !  337.8  26.9  1.7e-104  1.5e-100     391     874 ..     338     796 ..     336     797 .. 0.88

  Alignments for each domain:
  == domain 1  score: 218.7 bits;  conditional E-value: 1.7e-68
       Nop14  42 eekRkktLl.keyqrrnKsggflDrRfGEnDptmtpeekmleRfarEkqrk...akkkslFnLeddeee............eLtHyGqsLselddfdde 124
                 ee+R ++   k    +nK gg++D+RfGE+D+++t+eekmleRf+rE+q++   +++k +FnL d +e+            +LtH G+ L++ d + d 
  CCD22364.1  68 EEQRIESSRvKKNTIKNKRGGLMDKRFGERDKNLTEEEKMLERFTRERQSQssrKNNKTIFNLGDGDEDddanamedlfsnNLTHLGKPLEKQDTLLD- 165
                 5555544430344569********************************88843334489*****555555578*****************88777666. PP

       Nop14 125 dledddd.deeeeegkldakrvreahfgggedeeeeeeeeeperkkskkevmeEvIaKSKlhKaeRqkekeedeelreeLDkelkdlrsllsstkkpks 222
                    +dd+ d + +   + akr r+      +d++ + e+ +p rkk+k+evm+E+IaKSK++K+eRqk+ke+ +e  ++LD++++d++s l +t+++k+
  CCD22364.1 166 ---MDDEvDASGDGFLEPAKRNRSY-----DDDNLG-ENMQPTRKKTKAEVMSEIIAKSKFYKHERQKAKEKMNEQIDDLDEDFDDVMSELMTTQPKKK 255
                 ...4555456565555555555522.....333333.6899***************************************************8776665 PP

       Nop14 223 eeakkeeekekkekksagkdkeeaddeYDklvreLafdkRAkPsdRtKteEElakeekerLeklEeeRlkRMrgeedeeeeeekkkkkkkeasaDdldd 321
                 +                 + k+e+d eYD  v+eL+++ RA+P+dRtKt EE+ ke +e+ +klE++Rl RM+g    eee++++    k    +dldd
  CCD22364.1 256 DMI----M----------EPKNEKDIEYDVKVKELIMEPRAAPADRTKTTEEIEKEAEEKKKKLEQQRLDRMQGM--VEEENGEE----K--GVEDLDD 332
                 332....2..........23457999************************************************8..33333333....2..3468*** PP

       Nop14 322 dfvleeeeeeeefglgkglkataeeeeeededdfeedddlvese 365
                 +f+ ++++e+ +   +++++      +++d+ +f e+d+++e+ 
  CCD22364.1 333 GFWANSDDEDLRDE-EENIA------NSDDDIEFGEKDNEDEDA 369
                 ***99855544211.22222......222223333332222221 PP

  == domain 2  score: 337.8 bits;  conditional E-value: 1.7e-104
       Nop14 391 ededdlsdleseeeeeedeleeelleeekkaaeekkekkkkkkkseekakeelpytfpcPesheellellekreisaedlptvvqRIralhhpsLaeeN 489
                 +d++dl d+e++  +++d++e +++++e        ++++++ +++   ++ +  t+ cP++h+ell llek+  + +++p ++ +I+   +p+Lae+N
  CCD22364.1 338 SDDEDLRDEEENIANSDDDIEFGEKDNE--------DEDANEPRDQGWPSKIINATIVCPNNHSELLLLLEKH--PINQHPKILRKIIRACQPKLAEGN 426
                 4555555555554445555422222222........223456889999999********************98..************************ PP

       Nop14 490 KeklqkflavLlqhiaylasqeeapp....failesLvrhlhsLaksfpeeaaeafrekLkemqkelekklakgkkktwPslsdLilLkligliFptSD 584
                 Ke+l+k+++++l+hi  la ++ +++     ++ +sLv+ l ++++++ + +++ +re + e+q+++++    g + +  +  dL++++l+g++F+tSD
  CCD22364.1 427 KERLGKLTTIILRHIMFLACEDYSANitdfTEVQNSLVQILKTMSEKYNQPLSNECREIIIEIQQRFKE----G-RYSTLTRGDLVFFTLVGSLFSTSD 520
                 *********************9976689988999*******************************7776....4.22333446**************** PP

       Nop14 585 frHpVvtPallliaeyLgqarirslsdlasglflctlvlqyqslSkRyvPEvinfllnlllllapkkskkkvpgvfpvkevkpsellelkeleekskke 683
                   H ++tP+ +li+e+L q r +s+++la  ++l+ ++lqyq+++kRy+PE++ f  ++l++l+p+++k  +++         se l+++ +e++ k+ 
  CCD22364.1 521 QYHLIITPCSILISELLDQIRFNSIEKLAVASILIRILLQYQRVAKRYIPEIVYFFEKSLATLLPESNK-IIKLRLD------SEELSFD-KEQDLKDI 611
                 *****************************************************************8666.3333333......4556666.44456666 PP

       Nop14 684 kkqrklslsdllkeesskeeseqlklsllstalsllek.faelyseksafveifepilkllkklklkkkklpeelqekleellaklerllkkalesRrp 781
                 +++++++l++l+  + + +++ ++k++ll+ +l+ l++ ++ +++e++af+ei+ +i kll +++    ++p+ +  k +++l+klerl+k++ +   p
  CCD22364.1 612 NDHKPIQLHKLFY-NGNLNDDTDFKFNLLNNILDSLDRiISAVWKEQPAFPEIIITIEKLLIEYH---IRYPKFT--KTKQILDKLERLMKFNEH--TP 702
                 6679*********.77888999****************56899*******************965...4577766..779***********9776..9* PP

       Nop14 782 LelqkhkplaiktlePkFeeeydpdkk.ydpdreraelaKLkaelKkErKGAiRELRKDaqFlareklkekkekdaeyekkvkrivaelqseeg 874
                 L+lq+hkp++i++++PkFee+++pdkk ydpdr+r+e++K+ka+lKkErK +++E+RKD++F ar++++ekk++ +ey++k+++i++++ +eeg
  CCD22364.1 703 LTLQNHKPISIPSHAPKFEENFNPDKKsYDPDRTRNEINKMKAQLKKERKFTMKEIRKDTKFEARQRIEEKKKESSEYHAKMAHIINTIRTEEG 796
                 ********************************************************************************************98 PP

>> DUF4018  Domain of unknown function (DUF4018)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.17   1.5e+03     145     169 ..     285     309 ..     275     317 .. 0.84
   2 ?   11.9   0.1   1.6e-05      0.14      95     132 ..     538     575 ..     509     611 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.17
     DUF4018 145 aelkdaeevveklGygekpkledak 169
                 a++ +++e +ek  + +k kle+++
  CCD22364.1 285 ADRTKTTEEIEKEAEEKKKKLEQQR 309
                 7999*****************9987 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.6e-05
     DUF4018  95 kllrfvsiiaiGvvsflivlllPyirlilsyilyvval 132
                   +rf si  + v+s+li  ll y r++  yi ++v +
  CCD22364.1 538 DQIRFNSIEKLAVASILIRILLQYQRVAKRYIPEIVYF 575
                 569*****************************999966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2518  (0.140443); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 5245.00
//
Query:       CCD22365.1  [L=447]
Description: hypothetical protein NDAI_0A02070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-22   78.3   0.1    5.3e-22   78.3   0.1    2.7  2  PCI       PCI domain
    2.2e-15   56.5   3.7    5.9e-15   55.1   3.7    1.8  1  RPN5_C    26S proteasome regulatory subunit RPN5 C-terminal d
  ------ inclusion threshold ------
      0.054   13.9   2.2       0.29   11.6   0.2    2.9  2  DUF5099   Domain of unknown function (DUF5099)


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.3      0.35   2.1e+03      38      63 ..     222     247 ..     142     253 .. 0.68
   2 !   78.3   0.1   8.8e-26   5.3e-22       5     105 .]     299     406 ..     297     406 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHHHHHHHHHCESEEEH CS
         PCI  38 llesLekkvrerllrqvskiyssisl 63 
                 +    +  +++r +  v+++y+ i l
  CCD22365.1 222 YKLLIKIGLYKRDYLDVAQYYQEIYL 247
                 33333444566666677778888876 PP

  == domain 2  score: 78.3 bits;  conditional E-value: 8.8e-26
                 HHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHH........HHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEE CS
         PCI   5 dllkalrsgnlsgfseelkdleeelladdglaq........llesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakid 95 
                  l+k +++++l++++   + + ++ l +d +a         ++++L+k+++e++lr +s++ys+i+lerl +lldl+++e+E ++++l+++g i ak++
  CCD22365.1 299 SLVKLFTTQELMRWPIVKETY-QDTLSKDIVAFgggpenkhHWDELKKRIIEHNLRVISQYYSRITLERLDELLDLTESETETFISDLVNQGIIFAKVN 396
                 699******************.5555555555578888999********************************************************** PP

                 TTTTEEEECS CS
         PCI  96 qesgivvfkk 105
                 ++++iv+f+k
  CCD22365.1 397 RPAKIVNFEK 406
                 ********96 PP

>> RPN5_C  26S proteasome regulatory subunit RPN5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   3.7   9.9e-19   5.9e-15       1      33 []     411     443 ..     411     443 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.1 bits;  conditional E-value: 9.9e-19
      RPN5_C   1 NevLNeWssninkLLelvekttHLInKEeMvhk 33 
                 +e+LNeWssn+++LLe +e+++HLI+KEe++h+
  CCD22365.1 411 SELLNEWSSNVDQLLENIETIGHLITKEEIMHG 443
                 59******************************6 PP

>> DUF5099  Domain of unknown function (DUF5099)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.17     1e+03       5      51 ..     130     181 ..     127     194 .. 0.78
   2 ?   11.6   0.2   4.8e-05      0.29       5      50 ..     267     312 ..     264     329 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.17
     DUF5099   5 lvliinkysevskeeikklkkkygik.....ivkligekkdkvlikeeidfe 51 
                 ++++  + ++v++++++ lk + +i+     +++l+ e+  ++ + e+i+f 
  CCD22365.1 130 KIFVETERARVTRQLVEILKTQGKIEeacdtLCELQVETYGSMDMFEKIEFI 181
                 6778788889999999999999999988888888888888888888888873 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 4.8e-05
     DUF5099   5 lvliinkysevskeeikklkkkygikivkligekkdkvlikeeidf 50 
                 ++li++ y+++++++i+k++  +++k ++++++  + ++++e +  
  CCD22365.1 267 YFLILSPYGNLQNDLIHKIQLDNKLKKLEIQESLVKLFTTQELMRW 312
                 689***********************99999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3160.18
//
Query:       CCD22366.1  [L=538]
Description: hypothetical protein NDAI_0A02080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-42  144.9  10.6    1.6e-42  144.9  10.6    1.9  2  DUF2013        Protein of unknown function (DUF2013)
  ------ inclusion threshold ------
      0.038   13.9   0.5       0.13   12.2   0.2    2.1  2  RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRC
      0.041   13.9   0.1       0.54   10.2   0.1    2.5  2  DUF4745        Domain of unknown function (DUF4745)


Domain annotation for each model (and alignments):
>> DUF2013  Protein of unknown function (DUF2013)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       2.3   1.4e+04     110     118 ..     183     191 ..     158     205 .. 0.51
   2 !  144.9  10.6   2.7e-46   1.6e-42       1     138 []     227     365 ..     227     365 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.3
     DUF2013 110 klrhtyLrv 118
                 ++ +  +++
  CCD22366.1 183 QISTVLMDL 191
                 222222222 PP

  == domain 2  score: 144.9 bits;  conditional E-value: 2.7e-46
     DUF2013   1 ddelnysviklllalneqfmvasleskelenkvlkvlsekksssktfgenlilllNReedlvlqllilklLyllft...tsetaelfYtnDlkVLvDvi 96 
                 dd +n++ +kl+l+lneq+m+ + +  e+ nk++++l+ +++ +++f+e l+l++NR+ed+++q++i+k+Lyl+++   + +++++fY+nDl+VLvDv+
  CCD22366.1 227 DDLFNNAQFKLILVLNEQYMMFARD-FEIGNKIFEYLIGQRKITSKFSELLLLKFNRTEDHTIQIMICKILYLILNrveDGTAMNFFYLNDLNVLVDVL 324
                 789*******************966.8************************************************9764456678************** PP

     DUF2013  97 iRelsdlsdeeeeklrhtyLrvlhpllkntqlseekykreel 138
                 iR+l+d+s e+ee lr t+Lrvl pllknt+ls+++y+++++
  CCD22366.1 325 IRQLEDIS-ENEEILRSTFLRVLLPLLKNTELSKTHYRKDDI 365
                 *******5.******************************997 PP

>> RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   2.1e-05      0.13      28      88 ..     156     219 ..     140     237 .. 0.80
   2 ?   -2.7   0.0      0.89   5.3e+03      71      89 ..     331     352 ..     328     361 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.1e-05
                    T.....SSHHHHHHHHHTTEEE-SGCCT-SEEE-SS---SHHHHHHCCCTTEEE-CHHHHHHHH CS
  RTT107_BRCT_5  28 evn...kedsdkkkLrklGikivqeakkcntliApkilRTeKFLksLskapkilspdfiedvLk 88 
                    ++n   +++s++++L++l+++i++e+k++ t+  + +    KF k+  ++ +i++  f+  +L+
     CCD22366.1 156 DDNgniLTKSNNNELNELDVTIIDEMKQISTVLMDLLFQIFKFCKCSITSLQIVDDFFVYFLLT 219
                    444567999***********************************99888889999999988887 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.89
                    CCCTTEEE-CHHHHHHHH...H CS
  RTT107_BRCT_5  71 LskapkilspdfiedvLk...k 89 
                    +s +++il ++f++ +L    +
     CCD22366.1 331 ISENEEILRSTFLRVLLPllkN 352
                    6778899999999988753323 PP

>> DUF4745  Domain of unknown function (DUF4745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   9.1e-05      0.54      47     128 ..      10      91 ..       2      95 .. 0.88
   2 ?    0.5   0.0     0.094   5.6e+02      21      42 ..     367     388 ..     357     427 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.1e-05
     DUF4745  47 lrnsipsklamqlktvwedlarAstvatstv..KseilslLqefstmaassvdqesfslldiqrireillenlltvinlqfqfl 128
                 + ++++++  +q+ ++ e +++ s   t+++   s++ s L  f   a++s      s++d+ r+  il+e+  ++ nl+ +f+
  CCD22366.1  10 IVSTHTNEEIVQFWDSLESILKLSNEKTGNIldESKVNSKLVTFLKIATDSYKIYINSDQDLYRLALILTES--SIFNLKKKFC 91 
                 67899999999********************66689*****************9999********9999997..6778888887 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.094
     DUF4745  21 awvnYLqalnnlCaAgsrLads 42 
                  +++YL+ ++n+C+  + L + 
  CCD22366.1 367 NLLRYLSNIDNICSNDQVLHEH 388
                 5689999999999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1023  (0.0570584); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3583.85
//
Query:       CCD22367.1  [L=1200]
Description: hypothetical protein NDAI_0A02090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   7.6e-132  440.5   3.8   1.2e-131  439.9   3.8    1.3  1  Coatomer_WDAD  Coatomer WD associated region
    5.9e-78  262.4   0.1    8.6e-78  261.9   0.1    1.2  1  COPI_C         Coatomer (COPI) alpha subunit C-terminus
      1e-40  136.9  16.7    8.3e-08   32.8   0.2    7.3  7  WD40           WD domain, G-beta repeat
    2.4e-14   53.4   1.4    2.6e-05   24.5   0.0    7.1  7  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    3.3e-06   26.0   3.8       0.23   10.0   0.1    4.1  4  Nup160         Nucleoporin Nup120/160
    0.00013   21.9   0.3        3.8    7.3   0.0    4.1  4  eIF2A          Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
       0.13   12.4   1.8       0.48   10.7   0.1    2.9  2  TPR_2          Tetratricopeptide repeat
       0.14   12.0   1.7       0.27   11.1   0.3    2.4  2  TPR_1          Tetratricopeptide repeat
        0.6   10.5   5.7        6.9    7.2   0.4    4.1  3  TPR_8          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.9   3.8  5.9e-135  1.2e-131       2     444 ..     344     770 ..     343     771 .. 0.99

  Alignments for each domain:
  == domain 1  score: 439.9 bits;  conditional E-value: 5.9e-135
                    XXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXX.X CS
  Coatomer_WDAD   2 sevrqanikkkeelkdgellslqlkelgsieiypqslshnpngrfvlV.cgdgeyiiyt.......alalrnkaygkgldfvwvssnrfavles.s 88 
                    +++++++++k     +++l++++lk++g  ++ ++s+s+np++++vlV  g++++ +         a++ ++  +++g+++++v++nrf+ +++ +
     CCD22367.1 344 KQLQIFDYHKR----VTSLPYVSLKKIGLAWNAFRSISYNPSQHSVLVnLGNDKFALALlpkqptgAVEPTSVIQDTGSFATFVARNRFVTFNTgT 435
                    78999999999....9*********************************9*******999**********************************9* PP

                    XXXXX.XXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...... CS
  Coatomer_WDAD  89 ksvkifknfkekktksikleyqvdkifg...GalLgvksegsvsfYDweqgklvrridvkkvknVvwsddgelvalvskdtvyilsynleaveeed 181
                    +++++ + +++k+tksi+le+ +++i++   G +L++k ++ v+++D++qgk + +i  k+vk+V ws dg++val+sk+t++i++++le      
     CCD22367.1 436 NTLEV-RTLDNKTTKSIHLEEPIKDIVSagpGVVLLLKAKE-VVLFDVQQGKKLGKIAAKNVKYVSWSLDGQHVALMSKHTITIANKKLE------ 523
                    *****.***********************************.************************************************...... PP

                    .......XXXXXXX.XXXXXXXXXXXX.XXXXXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 182 eeegvedafevlhelsesiksgaWvgd.vfiYttsnnrlky.lvngevgiikhldktlyilgykgkenklylldkdgnvvsleidlselefktavl 275
                            ++++he +++iks+aW+++ v+iY+t n ++ y l+nge giik+l+ktlyi++++g  + +y ld+dg+v++l+id++e++fk+a++
     CCD22367.1 524 -------LVNSMHE-TIRIKSAAWDESgVLIYSTLN-HIRYsLLNGERGIIKTLEKTLYITRVQG--QLVYTLDRDGEVEILTIDPTEYKFKKALI 608
                    .......*******.*********************.****************************..***************************** PP

                    XXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXX-GGGSS-HHHHHHHHHHTT-HHHHHHHHHHH--HHHHHHHHHHHHHTT-HHHHHHH CS
  Coatomer_WDAD 276 rkdleevlkiiaasnllpeipkeegqkiirfLekkgypelAlqlvqDpetkFdLAlelgnLelAlelakelddeekWkkLgdaAlsqgniklaeea 371
                    +k++ evl+ii++snl+       gq+ii++L+k gype+Alq+vqDp+t+F+LAle+gnLe+Ale ak+l++ ++W++L +aAlsqgni+l+e++
     CCD22367.1 609 NKNFPEVLRIIRNSNLV-------GQNIISYLQKSGYPEIALQFVQDPQTRFNLALEYGNLEVALEEAKKLNNSQTWDSLNEAALSQGNISLVEMI 697
                    *****************.......************************************************************************ PP

                    HHHTT-HHHHHHHHHHHT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT CS
  Coatomer_WDAD 372 yqkakdfdkLllLylstgnkekLkkLakiaekkgdyniafqaalllgdvekcvdlLiksgrlpeAalfAktyg 444
                    +q +++fdkL++Lyl+tg+++k +k++ ia +++d+ +++ ++++ +  e+++++++++g+l++A+++Ak++g
     CCD22367.1 698 HQTQHSFDKLSFLYLLTGDRSKSSKMGAIATNRNDVPSMILNSIYNDATEERANIFAEAGSLALAYAVAKSNG 770
                    **********************************************************************998 PP

>> COPI_C  Coatomer (COPI) alpha subunit C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.9   0.1   4.3e-81   8.6e-78      42     397 ..     851    1198 ..     817    1200 .] 0.88

  Alignments for each domain:
  == domain 1  score: 261.9 bits;  conditional E-value: 4.3e-81
                  XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXX---HHHHHHHH---HHHHHHHT-HHHHHHHHHHHS-----GGG CS
      COPI_C   42 kkeeeededeeeeedeeeggWdv..edlelpadldaeaaasaaaesevfvaPtkgvpvsqiWvnksqlaadhvaaGsFetAmrLLnrqvGvvnfapl 136 
                  ++e++  e e +e+ e e++Wd+  edl+++++++ + a+++          t+  ++ + Wv++s+l+a  vaaG+F++A + L +q G++ f+pl
  CCD22367.1  851 ADEGDFFETEVAEDLEGEDAWDLgdEDLNIDEEVQDDLAKEEV---------TTEETEVSNWVKNSKLPAVLVAAGAFDAAAQALGKQAGIISFEPL 938 
                  23333444444488899*****966777777776655555443.........334456789************************************ PP

                  HHHHHHHHHHS-EEE-SSTT.S--EEE--BTTTTT--SSS--B-----HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHGGG----SHHHHHHHH CS
      COPI_C  137 kslFlelyaasrtslealps.lpsllvalernwkeaaaknglPalvlklsqleerLkaaYklttegkfseavekfrsillsipllvvdskqevdevk 232 
                  +++F++ y + rt+++a+ps lps++ +++ + + ++ k  lP++   ++ +++++ ++++++ + k++ a+++f++ +++i+l   d+ ++ + ++
  CCD22367.1  939 RPYFIDRYEGCRTYMAATPSeLPSIVGYIRSTDDIENEKDILPYIP-GIDVIKSKMNEGFNYFKANKLELAIKSFKEAIYNIILSAFDNDEDEETAR 1034
                  *****************9973688888888777778888899*985.799*********************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH CS
      COPI_C  233 eLieicreYivgLrmEikRkelkksddqkrqaElaAYfthcnlqpvHliLaLrsAlnlffKlknfktaasfarrLLelgpkeevaqqarkvlqacek 329 
                  + +e +reYi+gL++E+kR++l   +d kr+ ElaAYft+++l ++H+  aL+ A++  fK knf  a+ fa  LL    +   a+qark+ + ++ 
  CCD22367.1 1035 KSLEKAREYILGLSIELKRRSLA-AEDIKRNLELAAYFTKAKLITAHRCNALQVAMSQNFKHKNFVQASYFAEELLKSIKTGPRADQARKIKERADS 1130
                  **********************9.789********************************************************************** PP

                  S--BSS--S--SSS---BBTTT--B--TTS--EE-TTT--EE-GGGTTSB-TTTSSSBSS-------- CS
      COPI_C  330 nptdevelnYdernPFvvcaatfvPiYrgkkevkcplcgasyvpelkgkvckvcevaeiGkdaiGLri 397 
                    +d+++l++d +  F+vca+t++PiY+ +++v +pl+ga+y+ + k+k+ k++ +++iG+ a+GLri
  CCD22367.1 1131 IASDAIQLDFDPYAEFDVCASTYTPIYKDSPSVLDPLTGAKYHASEKNKIDKIAGISKIGAPASGLRI 1198
                  *******************************************************************8 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.024        48      15      38 .]      16      39 ..       5      39 .. 0.90
   2 !   26.9   0.0   3.1e-09   6.2e-06       2      38 .]      44      81 ..      43      81 .. 0.94
   3 !   32.8   0.2   4.2e-11   8.3e-08       2      38 .]      86     123 ..      85     123 .. 0.97
   4 !   26.6   0.0   3.9e-09   7.7e-06       3      38 .]     129     165 ..     127     165 .. 0.91
   5 !   22.5   0.2   7.7e-08   0.00015       6      37 ..     204     236 ..     197     237 .. 0.87
   6 !   29.0   0.6   6.5e-10   1.3e-06       4      38 .]     246     281 ..     243     281 .. 0.93
   7 ?   -1.9   0.0       3.7   7.3e+03       2      24 ..     344     360 ..     343     362 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.024
                EEEEETTSSEEEEEETTSEEEEEE CS
        WD40 15 slafspdgawlasGsdDgtvriWd 38
                ++af+p+ +w++ +    t+ +Wd
  CCD22367.1 16 GIAFHPSRPWVLVALFSSTIQLWD 39
                789*******999955*******9 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 3.1e-09
                EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                ++l+ ++ H ++v++l+f+p ++ ++s++dD t+++W+
  CCD22367.1 44 TLLHRFEDHeGPVRGLDFHPTQPIFVSAGDDYTIKVWS 81
                68999****999***************9*********5 PP

  == domain 3  score: 32.8 bits;  conditional E-value: 4.2e-11
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +cl+tl GH + v+ + f+++ +w++s+sdD+t+riW+
  CCD22367.1  86 KCLYTLQGHlDYVRTVFFHHELPWIISASDDQTIRIWN 123
                 8********999*************************8 PP

  == domain 4  score: 26.6 bits;  conditional E-value: 3.9e-09
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                  +  ltGH++ v + +f+p+ ++++s+s D +vr+Wd
  CCD22367.1 129 EIACLTGHNHfVMCAQFHPNEDLVVSASLDESVRVWD 165
                 67789***777*************************9 PP

  == domain 5  score: 22.5 bits;  conditional E-value: 7.7e-08
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +l+GH  +v+  +f+p  ++++sGsdD+ v++W
  CCD22367.1 204 ILEGHtRGVNWASFHPTLPLIVSGSDDRQVKLW 236
                 578**666************************* PP

  == domain 6  score: 29.0 bits;  conditional E-value: 6.5e-10
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + t++GH ++v ++ f+p++++++s ++D+t+riWd
  CCD22367.1 246 VDTCRGHtNNVDCVIFHPHQNLIISVGEDKTLRIWD 281
                 6799***999**************9999*******9 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 3.7
                 EEEEEEESSSSEEEEEEETTSSE CS
        WD40   2 qclrtltGHssvtslafspdgaw 24 
                 ++l++++ H+ vtsl      ++
  CCD22367.1 344 KQLQIFDYHKRVTSL------PY 360
                 67889999*99***9......66 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.045        89      35      79 ..       8      52 ..       2      54 .. 0.89
   2 !   12.1   0.0   9.2e-05      0.18       9      81 ..      27      96 ..      22     148 .. 0.87
   3 ?    1.6   0.1      0.17   3.4e+02      35      67 ..     134     166 ..     107     180 .. 0.65
   4 !   24.5   0.0   1.3e-08   2.6e-05       2      81 ..     216     296 ..     215     311 .. 0.92
   5 ?    1.1   0.2      0.24   4.8e+02      37      56 ..     491     510 ..     467     545 .. 0.62
   6 ?    3.0   0.0     0.065   1.3e+02      14      45 ..     567     595 ..     564     606 .. 0.79
   7 ?    0.0   0.0      0.55   1.1e+03       7      38 ..    1065    1096 ..    1063    1105 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.045
  ANAPC4_WD40 35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79
                 ++++s+ +++a++p+     va   ++++l d   g+++h ++ +
   CCD22367.1  8 ESKSSRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHRFEDH 52
                 56778999********************************99765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 9.2e-05
  ANAPC4_WD40  9 LiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81
                 L+Al +++ +l+ +R+ g  +  +  +++++ vr+L ++p   +++ a +d ++++ + e+ k++ +l+ + +
   CCD22367.1 27 LVALFSSTIQLWDYRM-GTLLHRF--EDHEGPVRGLDFHPTQPIFVSAGDDYTIKVWSLETNKCLYTLQGHLD 96
                 7788888888888887.4566666..78999**********************************99987766 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.17
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrllda 67 
                  +++++ v + +++p++ l + a  d +vr+ d+
   CCD22367.1 134 TGHNHFVMCAQFHPNEDLVVSASLDESVRVWDI 166
                  455666777777777777777777777777776 PP

  == domain 4  score: 24.5 bits;  conditional E-value: 1.3e-08
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlngqrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  s+ pt  Li  +++d ++ + R++  + w++ +  ++ ++v ++ ++p  +l+  + +d ++r+ d  +   v++++ +++
   CCD22367.1 216 SFHPTLPLIVSGSDDRQVKLWRMSQTKAWEVdTCRGHTNNVDCVIFHPHQNLIISVGEDKTLRIWDLDKRVPVKQFKREHD 296
                  68899**************************65568899*******************************99999998776 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.24
  ANAPC4_WD40  37 edsevrsLaWkpdgklLava 56 
                    ++v+ ++W+ dg+  a  
   CCD22367.1 491 AAKNVKYVSWSLDGQHVALM 510
                  45677788888888877654 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.065
  ANAPC4_WD40  14 tedgellvfRlngqrvwtleedkedsevrsLa 45 
                  t ++ l++ R++gq v+tl   ++d+ev+ L 
   CCD22367.1 567 TLEKTLYITRVQGQLVYTL---DRDGEVEILT 595
                  567899*************...6666666554 PP

  == domain 7  score: 0.0 bits;  conditional E-value: 0.55
  ANAPC4_WD40    7 mDLiAlatedgellvfRlngqrvwtleedked 38  
                    +L A+ t+ + + ++R n  +v   ++ k++
   CCD22367.1 1065 LELAAYFTKAKLITAHRCNALQVAMSQNFKHK 1096
                   5899***************9999877655555 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0005      0.99     238     255 ..      73      90 ..      62     102 .. 0.84
   2 ?    0.6   0.1     0.084   1.7e+02     233     255 ..     110     132 ..     108     137 .. 0.87
   3 !    4.9   0.0    0.0042       8.4     226     250 ..     143     169 ..     134     190 .. 0.81
   4 !   10.0   0.1   0.00012      0.23     208     255 ..     243     290 ..     230     296 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0005
                 TT-EEEEEETTTTEEEEE CS
      Nup160 238 rdgkLrvWnlltgkclat 255
                  d++++vW+l+t+kcl+t
  CCD22367.1  73 DDYTIKVWSLETNKCLYT 90 
                 599**************9 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.084
                 EEEEETT-EEEEEETTTTEEEEE CS
      Nup160 233 lfalsrdgkLrvWnlltgkclat 255
                 + ++s d+++r+Wn ++ k +a+
  CCD22367.1 110 IISASDDQTIRIWNWQNRKEIAC 132
                 678899***********998887 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0042
                 .....TTTEEEEEETT-EEEEEETTTT CS
      Nup160 226 vei..gqtylfalsrdgkLrvWnlltg 250
                 ++   ++++++++s+d  +rvW+++ +
  CCD22367.1 143 AQFhpNEDLVVSASLDESVRVWDISGL 169
                 3334599****************9865 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00012
                 SS---TT-ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 208 rrksgasvalsldvavavveigqtylfalsrdgkLrvWnlltgkclat 255
                   + +++   + +v   + + +q+++ ++  d++Lr+W+l+   ++ +
  CCD22367.1 243 AWEVDTCRGHTNNVDCVIFHPHQNLIISVGEDKTLRIWDLDKRVPVKQ 290
                 555566666667777767777*******************99887765 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.83   1.7e+03      99     182 ..      10      95 ..       2     107 .. 0.68
   2 ?    1.6   0.1      0.11   2.1e+02     126     175 ..     118     163 ..      76     173 .. 0.74
   3 !    7.3   0.0     0.002         4      52     143 ..     199     293 ..     194     297 .. 0.74
   4 !    7.3   0.0    0.0019       3.8     127     162 ..     476     511 ..     430     543 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.83
                 EEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT-..-EEEE-TTSSEEEEEE-TTT-SS...S-EEEEEETTTEE CS
       eIF2A  99 eeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaana..tlvewspdgryvlTattaprlrv...dngfkiwsysGkl 182
                 +++++  i f+p+   vl+a f ++   +++wd    + ++++e  +     ++++p+   ++ a     ++v   +++  +++++G+l
  CCD22367.1  10 KSSRAKGIAFHPSRPWVLVALFSST---IQLWDYRMGTLLHRFEDHEGpvRGLDFHPTQPIFVSAGDDYTIKVwslETNKCLYTLQGHL 95 
                 4555667888999999999999887...9999999888888887665411457888888888888654444433225666666666665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.11
                 EEEEEETTTTEEEEEEE.-TT--EE.EE-TTSSEEEEEE-TTT-SSS-EEEE CS
       eIF2A 126 eleiwdvkkkkkiakae.aanatlv.ewspdgryvlTattaprlrvdngfki 175
                 ++ iw+ +++k+ia +  + + +++ +++p+ ++v+ a+   ++      ++
  CCD22367.1 118 TIRIWNWQNRKEIACLTgHNHFVMCaQFHPNEDLVVSASLDESV------RV 163
                 48899999999998765133444443799999999988765444......44 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.002
                 EECCEESSS.EEEEEE-TTSS-E.EEEESSSSCEEEEEECS.....CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE- CS
       eIF2A  52 evvelkkegpihdvaWspkskef.aviyGkmpakvslfdlk.....vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaea 143
                 +vv+   eg    v+W +    + +++ G  +++v+l+ +         +++ ++++  +++f+p+++l++  G   +   l iwd +k+  +++++ 
  CCD22367.1 199 CVVKFILEGHTRGVNWASFHPTLpLIVSGSDDRQVKLWRMSqtkawEVDTCRGHTNNVDCVIFHPHQNLIISVGEDKT---LRIWDLDKRVPVKQFKR 293
                 566666677777888866555543899************963333222234445566678***********9998887...99999999888888775 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0019
                 EEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEEEE CS
       eIF2A 127 leiwdvkkkkkiakaeaanatlvewspdgryvlTat 162
                 + ++dv++ kk+ k+ a+n  +v ws dg++v+ ++
  CCD22367.1 476 VVLFDVQQGKKLGKIAAKNVKYVSWSLDGQHVALMS 511
                 5679***************************97555 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00024      0.48       5      28 ..     993    1016 ..     990    1017 .. 0.93
   2 ?   -2.5   0.1       3.9   7.7e+03      18      29 ..    1031    1042 ..    1026    1043 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00024
       TPR_2    5 ynlGlayyklgdyeeAleafekAl 28  
                  +n G  y+k++++e A++ f++A+
  CCD22367.1  993 MNEGFNYFKANKLELAIKSFKEAI 1016
                  589********************7 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.9
       TPR_2   18 eeAleafekAle 29  
                  e A++ +ekA e
  CCD22367.1 1031 ETARKSLEKARE 1042
                  668999999866 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1         8   1.6e+04       5      13 ..     653     661 ..     650     662 .. 0.68
   2 ?   11.1   0.3   0.00014      0.27       5      28 ..     993    1016 ..     989    1018 .. 0.88

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 8
                 HHHHHHHHH CS
       TPR_1   5 ynlGnayfk 13 
                 +nl++ y +
  CCD22367.1 653 FNLALEYGN 661
                 688888765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00014
                  HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1    5 ynlGnayfklgkydeAleyyekAL 28  
                   n G  yfk +k++ A++ +++A+
  CCD22367.1  993 MNEGFNYFKANKLELAIKSFKEAI 1016
                  577888*****************8 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.57   1.1e+03      12      27 ..     767     782 ..     760     783 .. 0.89
   2 ?    7.2   0.4    0.0035       6.9       6      29 ..     994    1017 ..     989    1018 .. 0.85
   3 ?    3.6   0.0     0.048        96       3      27 ..    1016    1040 ..    1016    1043 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.57
                 HHTT-HHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyeka 27 
                 ++ gd  +A +++e+a
  CCD22367.1 767 KSNGDSAAASSFLEQA 782
                 789***********98 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0035
                  HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8    6 nlgsiylklgdyeeAkeyyekale 29  
                  n g  y+k +++e A++++++a++
  CCD22367.1  994 NEGFNYFKANKLELAIKSFKEAIY 1017
                  66777*****************95 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.048
                  HHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8    3 ayynlgsiylklgdyeeAkeyyeka 27  
                  +y+ + s+ ++ +d e A +++eka
  CCD22367.1 1016 IYNIILSAFDNDEDEETARKSLEKA 1040
                  5899999*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 7870.57
//
Query:       CCD22368.1  [L=366]
Description: hypothetical protein NDAI_0A02100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-23   83.5   0.1    2.3e-23   82.7   0.1    1.3  1  ApbA_C    Ketopantoate reductase PanE/ApbA C terminal
    7.6e-18   64.6   0.0    1.1e-17   64.1   0.0    1.2  1  ApbA      Ketopantoate reductase PanE/ApbA
  ------ inclusion threshold ------
       0.13   12.5   0.0       0.27   11.4   0.0    1.5  1  NitrOD2   Nitrososphaera output domain 2
       0.31   10.6   0.4       0.44   10.1   0.4    1.2  1  DAO       FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.1   5.2e-27   2.3e-23       8     124 ..     224     343 ..     223     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 5.2e-27
      ApbA_C   8 eKllinaainpltalldckngell.....espelralvrallkEalavaeaegvelseerleeaveavlektaanrsSMlqDveagrktEidyinGavv 101
                 +Kll+naain++tal+++++ ++l     ++   +++++++++E++++a +eg+ l+e+ +    ++++++ +  ++SM+ D e+g+ +E+++i+G+++
  CCD22368.1 224 SKLLYNAAINTTTALVGLDVPRCLefavdKKSTEMEIFEPAMREIIKIAASEGIILEEQ-FVGFFANITRN-KMFKPSMCVDEEKGQLMELEVILGNPL 320
                 6*******************999999999889999******************988888.66666666655.444************************ PP

      ApbA_C 102 klAeklgvetPvnellyellkal 124
                 k+A+++g+etP + +ly+ll ++
  CCD22368.1 321 KIAKRNGIETPLLSMLYNLLVLV 343
                 *******************9765 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   2.4e-21   1.1e-17       1     151 [.      15     185 ..      15     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 2.4e-21
                 EEEES-SHHHHHHHHHHHH.HTHCEEEE-SCHHHHHHHHHCEEEEETT.CEEEEEECEEECCH...SCCCCS-ESEEEE-SSGGGH...HHHHHH.HGG CS
        ApbA   1 iailGaGaiGsllaakLak.agadvtlilrsrrlealkknGlrltseg.geeilrppealsae...ekselepidlvivtvKayqt...eealee.ikp 90 
                 ++++GaG++G + a +L+  +  +v ++ rs+ ++++  nG++++s++ g   +++p+++  +   +++++  + ++++t+K+ ++   e+ +++ ikp
  CCD22368.1  15 VLVIGAGGVGVITALSLYIrKLSHVSMVIRSD-YDHVTANGYQIDSCDyGHISNWKPHSIYRTaydASQSGLFFNYLVITTKNIPDgpvESRVSNiIKP 112
                 68***************8878889********.****************999999999999999*9999*************98651116678888999 PP

                 GECTCE........EEEEESSSSCHHHHHTTTS....TTSEEEEEEEE-EEEEEETTEEEECS--EEEEEESS CS
        ApbA  91 lldpnt........vvlllqNGlgheeelreal....pkprvlggvtthgatregpgevhhagkgeikigela 151
                 +l++n         +++l+qNG++ e+e+  ++     k  +l+g+  +g+t+ g+g +++ gk+ + +g+++
  CCD22368.1 113 ILESNRtlqseeltNIILIQNGIDIEKEIVSKFnkddYKYSLLSGIQLIGSTKIGKGIIKQIGKDHLSVGAFD 185
                 99999568899999***************999966543449****************************9986 PP

>> NitrOD2  Nitrososphaera output domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     6e-05      0.27      11      73 ..     154     214 ..     145     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6e-05
     NitrOD2  11 ilddlkeilGpevfdalmeliaedylggemdvrtailqrpdlferalvellGeiGekvlakvc 73 
                 +l+ ++ i  +++ + ++++i +d+l   + +  a  ++   f + +vel G+ G+k+l +  
  CCD22368.1 154 LLSGIQLIGSTKIGKGIIKQIGKDHLS--VGAFDACDRKAIHFAQVFVELYGNEGKKILLSSM 214
                 6778888888899999**********9..7788888788888****************97654 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4   9.9e-05      0.44       2      21 ..      15      34 ..      14      55 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.9e-05
                EEEECTSHHHHHHHHHHHHT CS
         DAO  2 vviiGGGiiGlstAyeLarr 21
                v++iG+G +G+ tA+ L  r
  CCD22368.1 15 VLVIGAGGVGVITALSLYIR 34
                9***************9644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2618.32
//
Query:       CCD22369.1  [L=528]
Description: hypothetical protein NDAI_0A02110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.2e-146  487.4  10.4   4.7e-146  487.3  10.4    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.065   13.5   0.1       0.56   10.5   0.0    2.5  2  HMD         H2-forming N5,N10-methylene-tetrahydromethanopter


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  487.3  10.4  5.2e-150  4.7e-146       1     486 [.      31     524 ..      31     528 .] 0.96

  Alignments for each domain:
  == domain 1  score: 487.3 bits;  conditional E-value: 5.2e-150
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 +ad+++t+lGPkGmdKm+  + g+++++nDG+tilk++ i hP+ak+lve++++qd+e+GDGTt+vviL+g+Ll +a +l+++g+hpt i e +++a+ 
  CCD22369.1  31 VADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVAKMLVEVSAAQDSEAGDGTTSVVILTGALLGAADRLLNMGIHPTIIAESFQRAAR 129
                 689************************************************************************************************ PP

                 HHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHH.HCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--SST.TSS CS
  Cpn60_TCP1 100 kaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAv.klieenekeldlgrikvvkieggsledselveGlvldkgvlsp.dmp 196
                 + +e+L e++ +is    dre+L+++a+tslssk++s+ + +l+ l+vd+v ++ +e++k++dl+ i+++k+ gg ++d+e+++G+vl ++ +++   p
  CCD22369.1 130 RSVEILLEMSHRIS--LSDREDLIRAASTSLSSKIVSQYSSFLAPLAVDSVlSIADEESKNVDLNDIRLIKKVGGTIDDTEMIDGVVLTQTAIKSaGGP 226
                 *********66666..569********************************55555555*****************************7777766588* PP

                 CEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B.....-HHHHHHHHHCT-EEE-S--HHHHHHHH CS
  Cpn60_TCP1 197 kklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgi.....ddlalhflakngilalrrvkkkdlerla 290
                 ++ e+ak+ l++++++++k++t+ ++v+sd  +++k++k+e+++l+++++ki+ks++nv+++qk+i     +dlalhfl k +i++++ ++++++e l+
  CCD22369.1 227 TRKEKAKIGLIQFQISPPKPDTENNIVVSDYRQMDKILKEERAYLLNICKKIKKSKCNVLLIQKSIlrdavNDLALHFLSKLNIMVVKDIEREEVEFLS 325
                 *****************************************************************999999**************************** PP

                 HHHT--EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEE...CESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHH CS
  Cpn60_TCP1 291 katGatavssledltpeelGtakkveeekigsekttiie...evksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakk 386
                 k +G++++s++e +t++ lG+a+ vee +    k++ ++   + + + ++++++rga+ ++lde+er+++dAl+v++++++++++++GGGa e+e++++
  CCD22369.1 326 KSLGCKPISDIELFTEDRLGSADLVEEIDSDGSKIVKLTgikNNTAKPTVSVVIRGANSMILDETERSLHDALCVIRCLVKERGLIAGGGAPEIEVSRR 424
                 *************************888888877777764445588899************************************************** PP

                 HHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEE CS
  Cpn60_TCP1 387 lkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLride 485
                 l ++++s++g e+++++ fa+ALevip tLaeNaGl++i+v+++lr++h++g ++ gi+v+++ +++  ++ +++p+ v ++a+++A+e +++iLrid+
  CCD22369.1 425 LIRESRSIEGVEAFVWKEFADALEVIPTTLAENAGLNSIKVVTELRSKHESGGVNDGISVRRSGTTNTYDEHILQPVLVSTSAITLASECVKSILRIDD 523
                 *************************************************************************************************** PP

                 E CS
  Cpn60_TCP1 486 i 486
                 i
  CCD22369.1 524 I 524
                 9 PP

>> HMD  H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.22     2e+03      54      85 ..      38      68 ..      16      80 .. 0.61
   2 ?   10.5   0.0   6.3e-05      0.56      53      95 ..     359     401 ..     351     403 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.22
                HHHHHHHHHHHHCC-HHHHHHCHHCC-SCCCT CS
         HMD 54 lveksGieglekalnpelllksaksmnlgeeq 85
                 +  +G+++++k+   e++++  +  ++ ++ 
  CCD22369.1 38 SLGPKGMDKMIKTSRGEIIISN-DGHTILKQM 68
                4455788888888777766643.344444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 6.3e-05
                 HHHHHHHHHHHHHCC-HHHHHHCHHCC-SCCCTCHHHHHHHHH CS
         HMD  53 slveksGieglekalnpelllksaksmnlgeeqeeLpaalkvl 95 
                 ++v+ +Gi++ + +  + ++++ a+sm+l+e++  L+ al v+
  CCD22369.1 359 KIVKLTGIKNNTAKPTVSVVIRGANSMILDETERSLHDALCVI 401
                 78999**********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3885.99
//
Query:       CCD22370.1  [L=686]
Description: hypothetical protein NDAI_0A02120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.2e-121  406.4   0.0   1.6e-121  406.0   0.0    1.2  1  BPL_N          Biotin-protein ligase, N terminal
    3.4e-23   82.0   0.0    7.2e-23   80.9   0.0    1.6  1  BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
    6.7e-11   41.9   0.1    1.8e-10   40.5   0.1    1.8  1  BPL_C          Biotin protein ligase C terminal domain


Domain annotation for each model (and alignments):
>> BPL_N  Biotin-protein ligase, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.0   0.0  2.7e-125  1.6e-121       1     377 []       1     371 [.       1     371 [. 0.91

  Alignments for each domain:
  == domain 1  score: 406.0 bits;  conditional E-value: 2.7e-125
       BPL_N   1 mnVLvYsGpgtskesvkhtletLrrlLspnYavqtvsakvllkePWastcallVlPgGaDlpYvrelngegnrkikeyVek.GGkylGlCAGaYygskr 98 
                 mnVL+Y+Gpgt++ svkh++++Lr +L+p+Yav+tvsakvl++ePW++++a++V+PgGaDlpYv+e++  ++  +k++V+k GG y+G+CAGaY+gs+r
  CCD22370.1   1 MNVLIYNGPGTTPGSVKHVVDSLRLFLEPYYAVSTVSAKVLETEPWMTKTAAVVFPGGADLPYVKECK-PIIPLLKHFVSKeGGIYIGFCAGAYFGSSR 98 
                 9*******************************************************************.**********999***************** PP

       BPL_N  99 vefevgdkklevvgeReLaffpgtcrGlafkGFkYesekGaravklkvskealkaeeekeefkiyynGggvFvdaeklknkvevLArYaeeldvdsgea 197
                 vef vg++++ev+ +R+L+ff+g++rG+af+GF+Y+se+Gar +kl++        ++ + f++y+nGg vFvda++++n vevLA+Yae++d   +++
  CCD22370.1  99 VEFCVGNPTMEVSSNRDLQFFKGIARGPAFNGFQYHSEAGARPAKLRL--------QDGSVFSTYFNGGPVFVDADHYEN-VEVLAHYAEKVDTPYSDN 188
                 ************************************************........4799********************.************999994 PP

       BPL_N 198 ....kkaAvvlckvgeGkalLtgvhpEfalanlkkqeaeekeykkvveeleadekaRleflkalLtklgLevneeeeetevpslsplllsslskeevee 292
                     + aA +lc+vg+GkalL+g+hpEf +++l+k+ +++k  ++vv+ l+++e++Rlef++ +L+k  L++n++ ++++ p+l+p+l +++ +++  +
  CCD22370.1 189 gkggEPAASILCTVGTGKALLVGAHPEFVPSVLEKS-EDKKFVSSVVSILKKNETKRLEFMRYILSKATLKCNSTLQNAKLPDLTPILAIASPHNK--N 284
                 445599***************************988.68999999****************************88899********9877665554..4 PP

       BPL_N 293 lleslkeklaae....k.eeeeevikdendtfrlekedeeeaeeaaeeeeeekedleevvkeilvvkeeeelpskkltplFdieaYfkeL 377
                 l+ ++k++l++       +e++  +kdend+f+l++  + +++   +++   ++d+++ vk+i+v++++e +p + ltp+Fdi++Yf++L
  CCD22370.1 285 LIGQWKDNLKNItdkeLpTENQVNFKDENDNFELYNGFT-NYD--LATRPLVNKDVNADVKTIIVPTQDELFPPPALTPSFDISKYFATL 371
                 666666655544111132335589***********9994.333..33444446689*******************************986 PP

>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   1.2e-26   7.2e-23       1     131 []     383     550 ..     383     550 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 1.2e-26
                    EEEEES-HHH..HHH..GCGGG--TT-EEEEEEESS-B....-B--B-TT.SEEEEEEEEESS...-CCGTHHH..HHHHHHHHHHHH......HH CS
  BPL_LplA_LipB   1 lgevikstnt..llkeslnsselesgglvvvrrqtgGr....nvwhspkg.eltyslllspeqktfqnrvlely..vsllvlavlealgyrdskpg 87 
                    +gev++st++  + ++sl ss +e++ l++++ q +Gr    n w++pkg  ++++++ +p q++ + ++++++  ++l++la++ea+   ++ pg
     CCD22370.1 383 YGEVVTSTSEllNTNKSLLSSLPENTVLHIGSLQISGRgrsgNSWVNPKGvSASTAVVSLPLQSPTTGDNISVVfvQYLSMLAYCEAI--ANYSPG 476
                    799*****99998999**********************************99************************************..889*** PP

                    TT-TTEEEETTTEEEE..............................TTEEEEEEEEEEEETTS-EEEEEEEEEE CS
  BPL_LplA_LipB  88 iegipvfikwpnDlyv..............................ngrKlaGiavtstrgktlhhivigvgvn 131
                    +e+ pv+ikwpnDly+                               + K+aG +v+++ +++ + + ig+g+n
     CCD22370.1 477 YEDLPVRIKWPNDLYAlkpdyyyekkmsllgksfdpslvpltdidpAYAKIAGLLVNTNFINNKYSLLIGCGLN 550
                    ************************************************************************98 PP

>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1     3e-14   1.8e-10       1      48 []     620     679 ..     620     679 .. 0.98

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 3e-14
                 STTSEEEEEETSCEEEEEEEEE.-TTSEEEEEETTE.............EEEESSCCEEEE CS
       BPL_C   1 hsGqeVtlededgkveGiavGI.dddGaLllktddg............lqpdinsGdislr 48 
                 hs q+Vtl++  g++++++ GI  d+G+L++k++++            lqpd+n++di+++
  CCD22370.1 620 HSEQIVTLTS-LGNIRAKISGItPDYGLLIAKELVSgsdsdftgnvyhLQPDGNTFDIFKG 679
                 9*********.79*********99***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       319  (0.0177924); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 4469.90
//
Query:       CCD22371.1  [L=1729]
Description: hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.3e-114  381.0   0.1   8.9e-114  380.0   0.1    1.5  1  RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   3.1e-107  358.0   0.1   4.6e-107  357.4   0.1    1.2  1  RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
      5e-78  261.1   0.0    1.5e-77  259.5   0.0    1.9  1  RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
    5.2e-63  212.3   0.4      1e-62  211.4   0.4    1.5  1  RNA_pol_Rpb1_6  RNA polymerase Rpb1, domain 6
    3.2e-47  159.9   3.5    6.9e-47  158.8   3.5    1.6  1  RNA_pol_Rpb1_7  RNA polymerase Rpb1, domain 7
    1.6e-45  154.8   0.0    4.3e-45  153.5   0.0    1.8  1  RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
    7.8e-35  119.1   0.1    2.2e-34  117.6   0.1    1.9  1  RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
    6.8e-15   54.5 290.8      0.032   14.6  14.6   15.2 22  RNA_pol_Rpb1_R  RNA polymerase Rpb1 C-terminal repeat
  ------ inclusion threshold ------
      0.082   13.3   0.0       0.17   12.3   0.0    1.4  1  DUF4123         Domain of unknown function (DUF4123)


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.0   0.1  4.5e-117  8.9e-114       2     312 .]      12     340 ..      11     340 .. 0.99

  Alignments for each domain:
  == domain 1  score: 380.0 bits;  conditional E-value: 4.5e-117
                     E---EEEEEE--HHHHHHH-SBB--STTSTCSTSSSSBBSSSSSSSSS-SSSSSTSTTTSSTTTT-----EEEEEECEEE-HHHHHHHHHHCTTC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1   2 kkikeiqfgiaspeeirkwSvvevtkaetieekslkPeegGllDerlgtidkdleCetCgkkkkeCeghfGhieLakPvfhigffklilkilecv 96 
                     +++ke+qfg++spee+r++Sv++++ +et++e++++++ gGl+D+rlg+id++l+C+tC++ ++eC+ghfGhi+LakPv+h+gf+ +i+k++e+v
      CCD22371.1  12 RTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVLHVGFIAKIKKVCESV 106
                     689******************************************************************************************** PP

                     ETTTTEBSS-TTSH....HHHHHHCSSSCCCCHHHHHHHHCCS-BE-................SSSSB-EEEEEETTEEEEEESSSST......S CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxx......x RF
  RNA_pol_Rpb1_1  97 ckecskllldeekkkllsklkkrekleelkkrlkaieelckkinlce................kCgavqpkleeegeklkaalkkske......e 169
                     c++c+klllde+++    +++++ ++++ kkr++a+++lck++++c+                +Cg++qp+++++g kl+ ++kk+k+       
      CCD22371.1 107 CMHCGKLLLDEHNE----QMRQAIAIKDSKKRFNAVWNLCKTKMICDtdvpsdddptqlisrgGCGNAQPTVRKDGLKLVGSWKKEKNtndgdeP 197
                     ************99....7888999********************************************************************88 PP

                     CEEEE-HHHHHHHHHCSTHHHHHHTTSBTTTB-GGGCCECCEEE--GGGS-BEESSSSSEEBECCCCHHHHHHHHHHHHHHHHHSSSSSTCHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 170 ekeklsaekvkkllkriededvevlgfkssgsrPewliltvlPVpPpeiRPsvqldggrrsedDlteklrdiikrNnrLkkaeeegapeliieee 264
                     e++ ls+e++++++k+i+ ed + lgf+++ +rPew+il+vlPVpPp +RPs+++++++r+edDlt kl+di+k+N +L++ e++gap+++iee 
      CCD22371.1 198 EQRVLSTEEILNIFKHISPEDSTRLGFNEEFARPEWMILNVLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEA 292
                     88********************************************************************************************* PP

                     HHHHHHHHHHCC-TTSSSSSEEBSTTSSS--THHHHHTSSSSCCCCCT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 265 kelLQehvatlfdneisglkpatqkskrplkslsqrLkGKeGrfRgnL 312
                     ++lLQ+hvat++dn+i+g+++a qks+rp+ks+++rLkGKeGr+RgnL
      CCD22371.1 293 ESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNL 340
                     ***********************************************9 PP

>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.4   0.1  2.3e-110  4.6e-107       1     266 [.     807    1396 ..     807    1397 .. 0.99

  Alignments for each domain:
  == domain 1  score: 357.4 bits;  conditional E-value: 2.3e-110
                      B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEEEETTS-EEESSGGGTS........................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
  RNA_pol_Rpb1_5    1 GLkvkefffhtmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtvrnsggeivqflygedg........................... 66  
                      GL+++efffh+mggReGLiDtAvkTae+GY+qRrlvkaled++v+yd+t rns g+++qf+ygedg                           
      CCD22371.1  807 GLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTARNSLGNVIQFIYGEDGmdaahiekqsldtiggsdaafekryri 899 
                      9******************************************************************************************** PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5   67 ............................................................................................. 66  
                                                                                                                   
      CCD22371.1  900 dlmnpknaldpsllesgseitgdvklqslldeeykqlikdrkflrkifvdgesnwplpvnirriiqnaqqtfridhskpsdltirdiifglkd 992 
                      ********************************************************************************************* PP

                      ................................................................B--TT-BHHHHHHHHHHHHHHCCCSSTTS CS
                      ................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5   67 ................................................................lvepGeavGiiaaQSiGePgTQltlnTFH 95  
                                                                                      +v+pGe+vG++aaQSiGeP+TQ+tlnTFH
      CCD22371.1  993 leerllvlrgkseiiqkaqddaitlfcclvrsrlstrrilqeyrltkqafewvlnnveaqflrsVVHPGEMVGVLAAQSIGEPATQMTLNTFH 1085
                      ********************************************************************************************* PP

                      STCSSTSSSSSSHHHHHHHHTT-SS-SS-EEEEEB-SSSSSCHHHCHHHHHHHSE...................................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................... RF
  RNA_pol_Rpb1_5   96 faGvasknvtlGvprlkeilnvskniksksltvllvdeeakelekakkvkkaiek...................................... 150 
                      faGvask+vt+Gvprlkeilnv+kn+k++sltv+l d++++++ekak +++aie+                                      
      CCD22371.1 1086 FAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLKDDYSSDQEKAKFIRSAIEHttlksitvaseiyydpdprstvipeddeiiqlhfslld 1178
                      ********************************************************************************************* PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5  151 ............................................................................................. 150 
                                                                                                                   
      CCD22371.1 1179 deteqsldrqspwllrleldraamndkdltmgqvgeriketfrndlfviwsednaekliircrvvrpksmdaeteaeedhmlkkientmleni 1271
                      ********************************************************************************************* PP

                      ...CBTTEEEEEEEEEEEEEEET.......EEEEEEECS--HHHHTTSTTTBETTTEEESSHHHHHHHHCHHHHHHHHHHHHHHHHHHTTS-- CS
                      ...xxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  151 ...gikkikrilvkeaekgkeee.......kelvletegvnlsevlkveevvdageilsndiaeileilgieaarkallkeiqevykvqgvsv 233 
                         g+++i+r+++++ +++ +++        e+vlet+gvnlsev++v++ vda++i++n++ +i e+lgiea r+al++e+ +v++++g++v
      CCD22371.1 1272 tlrGVENIERVVMMKYDRKVPSQsgeyqkvPEWVLETDGVNLSEVMTVPG-VDATRIYTNSFIDITEVLGIEAGRAALYREVYNVIASDGSYV 1363
                      ****************9988888899*9999*******************.****************************************** PP

                      -HHHHHHHHHHHTTTSS---SSTTCHCCSSSHH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  234 ndrHlelivdqmtkkgeivavnrsGinkaelsa 266 
                      n+rH++l+vd+mt++g +++++r+G+n+a+++a
      CCD22371.1 1364 NYRHMALLVDVMTTQGALTSITRHGFNRASTGA 1396
                      *****************************9975 PP

>> RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.5   0.0   7.7e-81   1.5e-77       1     166 []     342     507 ..     342     507 .. 0.99

  Alignments for each domain:
  == domain 1  score: 259.5 bits;  conditional E-value: 7.7e-81
                     SEEESSEEEEEEEEESSS-TTEEEEEHHHHTTSEEEEE-STTTHHHHHHHHHHTTTSSSSEEEEESTTSSEEETTTT-SCHHCCTTTTSEEEEE- CS
  RNA_pol_Rpb1_2   1 GkrvdysaRsvispdpnlkldevgvPisvakkltvpeivtelnikklrklvengpevyPgasyvkredgsekklkakkrklakelekgdiverhv 95 
                     Gkrvd+saR+vis+dpnl+ld+vgvP+s+a++lt+pe+vt++ni++l++lv+ngp+++Pga+yv+r++g + +l++ kr+ + +l++g++verh+
      CCD22371.1 342 GKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERHI 436
                     9********************************************************************************************** PP

                     -TTSEEEEE-SSTTSGGGEEEEEEEEESSSSEEEEGGGHCCCT--SSS-EEEEE--SSHHHHHHHHHCSBT CS
  RNA_pol_Rpb1_2  96 kdgdvvllNRqPsLhklsimahrvkvlekktlrlnlsvttayNaDFDGDemnlhlpqseearaEaeelllv 166
                     +d+d vl+NRqPsLhk+s+mahrvkv++++t+rlnlsvt++yNaDFDGDemnlh+pqsee+raE+++l+ v
      CCD22371.1 437 TDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAV 507
                     ********************************************************************975 PP

>> RNA_pol_Rpb1_6  RNA polymerase Rpb1, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.4   0.4   5.1e-66     1e-62       1     191 []     873    1056 ..     873    1056 .. 0.98

  Alignments for each domain:
  == domain 1  score: 211.4 bits;  conditional E-value: 5.1e-66
                      B-GGGEEEEE-TTSSS-HHHHHHHH---TTSSSSS--TTTSSSHH..HHTT-TTHHHHHHHHHHHHHHHHHHHHHTT-T..T---EEE..EES CS
  RNA_pol_Rpb1_6    1 ldgafiEkQkidllklsdekfekkYkldlddekkselkelleeevveeiredaelqelldeEyeqLkedRellrkeifpdeekdekvklqLPv 93  
                      +d+a+iEkQ++d++  sd++fek+Y++dl+++k+   ++lle+    ei++d++lq+lldeEy+qL++dR++lrk if   +++++++  LPv
      CCD22371.1  873 MDAAHIEKQSLDTIGGSDAAFEKRYRIDLMNPKNALDPSLLESGS--EITGDVKLQSLLDEEYKQLIKDRKFLRK-IFV--DGESNWP--LPV 958 
                      9******************************99988889*****9..***************************9.677..6789**9..*** PP

                      -HHHHHHHHHHHTT--SSS-B---HHHHHHHHHHHHTT--SS-SSSHHHHHHHHHTTTHHHHHHHHTS-HHHHHHTS---HHHHHHHHHHHHH CS
  RNA_pol_Rpb1_6   94 NikRlienaqkefkidkrkesdlspveviekvkelldklvvvrgddklskeaqenatllfkillrstLasKrvleeyrLskeaFdwllgeies 186 
                      Ni+R+i+naq++f+id++k+sdl+  ++i  +k+l ++l+v+rg++++ ++aq++a++lf +l+rs+L+++r+l+eyrL+k+aF+w+l+++e+
      CCD22371.1  959 NIRRIIQNAQQTFRIDHSKPSDLTIRDIIFGLKDLEERLLVLRGKSEIIQKAQDDAITLFCCLVRSRLSTRRILQEYRLTKQAFEWVLNNVEA 1051
                      ********************************************************************************************* PP

                      HHHHH CS
  RNA_pol_Rpb1_6  187 rFkka 191 
                      +F ++
      CCD22371.1 1052 QFLRS 1056
                      **987 PP

>> RNA_pol_Rpb1_7  RNA polymerase Rpb1, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8   3.5   3.5e-50   6.9e-47       1     135 []    1141    1274 ..    1141    1274 .. 0.95

  Alignments for each domain:
  == domain 1  score: 158.8 bits;  conditional E-value: 3.5e-50
                      EEGGGTEEEEEEEB---TTS-SSGGGGHHHHTTS---------..----SBEEEEEE-SHHHHHTT--HHHHHHHHHHHHTTTEEEEE--TTS CS
  RNA_pol_Rpb1_7    1 ttLrkvtaateiyYDPdprntvieeDrefveeyyelpdedvek..srlspWlLRieLdrkkmtdkkltmeevaekikeefkndlkvifsddna 91  
                      ttL+++t a+eiyYDPdpr+tvi eD e+++ +++l d+++e+  +r+spWlLR+eLdr+ m+dk+ltm +v+e+ike+f+ndl+vi+s+dna
      CCD22371.1 1141 TTLKSITVASEIYYDPDPRSTVIPEDDEIIQLHFSLLDDETEQslDRQSPWLLRLELDRAAMNDKDLTMGQVGERIKETFRNDLFVIWSEDNA 1233
                      9**********************************8887777448************************************************ PP

                      SSEEEEEEE------------..--HHHHTTHHHHHHHSS-EEE CS
  RNA_pol_Rpb1_7   92 eklvlririvkeekekeeeqedkaeddkfLkklesnllssltLr 135 
                      ekl++r+r+v+    k+ ++e++ae+d++Lkk+e+++l+++tLr
      CCD22371.1 1234 EKLIIRCRVVRP---KSMDAETEAEEDHMLKKIENTMLENITLR 1274
                      **********96...567778889*******************8 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.5   0.0   2.2e-48   4.3e-45       1     157 []     510     669 ..     510     669 .. 0.96

  Alignments for each domain:
  == domain 1  score: 153.5 bits;  conditional E-value: 2.2e-48
                     CSEETTTTEESSS--THHHHHHHHHSSTTEEEEHHHHHHHHHHSSSCCSSSSSSSSSBESSSEBEEHHHHHHCCCHCCCCEEEESSSS......S CS
  RNA_pol_Rpb1_3   1 nilspqsgkPvigivQDsllGvyllTkedvfidreeaqqllykgvgsdsktvtlrpailkpkelwtgkqtfsrilpneinyerkneek......d 89 
                     +i+s qs+kP++givQD+l+G+++lT +d+f++ +e++++ly++ ++d   v ++pai+kpk+lw+gkq++s  +p+ i ++r+ e +      d
      CCD22371.1 510 QIVSAQSNKPCMGIVQDTLCGIRKLTLRDTFLEFDEVLNMLYWVPDWD--GVIPTPAIIKPKPLWSGKQVLSIAIPRGIHLQRFDEGTtllspkD 602
                     79******************************************9998..569******************************94444578888* PP

                     TSEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEB-TGGGG CS
  RNA_pol_Rpb1_3  90 gkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigDt 157
                     + +l+ +g++i Gv+dkk+vg +s+g+lihv+++e g++ +++++ ++q++++ +ll++gf++gigDt
      CCD22371.1 603 NGMLVVDGQIIFGVVDKKTVG-SSNGGLIHVVTREKGPTICAKLFGNIQKVVNFWLLHNGFSTGIGDT 669
                     *********************.9********************************************7 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.1   1.1e-37   2.2e-34       3     108 .]     695     800 ..     693     800 .. 0.95

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 1.1e-37
                     HHCTHTCCHHHTTHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSHHHHHHHCTSSS-HHHHHHHHTB-EEEEBTTBSS--SSTSCSSTTSSS CS
  RNA_pol_Rpb1_4   3 eaerygkledlpgksleelfeakinkilnkardkagkiaskslaasNsiliMvksGaKGsiinisqiagclGqqnvegkripkgfsgrtlphfkk 97 
                     ++ +++ l+ ++g++l+e+fe+++  +ln+ardkag++a+ +l++ N++++Mv++G+KGs+ini+q+++c+Gqq+vegkri  gf +rtlphf+k
      CCD22371.1 695 KEAQSNLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEMNLNDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGYGFVDRTLPHFSK 789
                     555569999***********************************66************************************************* PP

                     SESSTTTSSEE CS
  RNA_pol_Rpb1_4  98 idespesrGFv 108
                     +d+spes+GFv
      CCD22371.1 790 DDYSPESKGFV 800
                     **********8 PP

>> RNA_pol_Rpb1_R  RNA polymerase Rpb1 C-terminal repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       4.8   9.6e+03       7      12 ..     472     477 ..     471     477 .. 0.82
   2 ?    3.5   1.1     0.053     1e+02       3      14 .]    1520    1535 ..    1519    1535 .. 0.72
   3 !    7.9  10.8    0.0022       4.3       2      14 .]    1530    1550 ..    1530    1550 .. 0.80
   4 !   14.6  14.6   1.6e-05     0.032       1      14 []    1544    1557 ..    1544    1557 .. 0.98
   5 !   10.6  16.8   0.00029      0.57       1      14 []    1558    1571 ..    1558    1571 .. 0.98
   6 !   10.6  16.8   0.00029      0.57       1      14 []    1572    1585 ..    1572    1585 .. 0.98
   7 !   13.0  15.7     5e-05     0.099       1      14 []    1586    1599 ..    1586    1599 .. 0.99
   8 !    9.2  15.6    0.0008       1.6       1      14 []    1593    1606 ..    1593    1606 .. 0.98
   9 !   10.8  16.6   0.00025      0.49       1      14 []    1600    1613 ..    1600    1613 .. 0.98
  10 !   10.5  16.9   0.00031      0.62       1      14 []    1607    1620 ..    1607    1620 .. 0.98
  11 !   10.7  16.7   0.00028      0.55       1      14 []    1614    1627 ..    1614    1627 .. 0.98
  12 !   10.5  16.9   0.00033      0.65       1      14 []    1621    1634 ..    1621    1634 .. 0.98
  13 !   10.7  16.7   0.00028      0.55       1      14 []    1628    1641 ..    1628    1641 .. 0.98
  14 !   10.5  16.9   0.00032      0.64       1      14 []    1635    1648 ..    1635    1648 .. 0.98
  15 !   10.7  16.7   0.00028      0.57       1      14 []    1642    1655 ..    1642    1655 .. 0.98
  16 !   12.8  15.9   5.7e-05      0.11       1      14 []    1649    1662 ..    1649    1662 .. 0.99
  17 !    9.3  15.6   0.00078       1.6       1      14 []    1656    1669 ..    1656    1669 .. 0.98
  18 !   10.7  16.7   0.00028      0.56       1      14 []    1663    1676 ..    1663    1676 .. 0.98
  19 !   10.7  16.7   0.00028      0.56       1      14 []    1670    1683 ..    1670    1683 .. 0.98
  20 !   10.6  16.8   0.00029      0.58       1      14 []    1677    1690 ..    1677    1690 .. 0.98
  21 !   14.4  14.2   1.8e-05     0.037       1      14 []    1684    1697 ..    1684    1697 .. 0.99
  22 ?    2.9  20.1     0.083   1.6e+02       1      14 []    1691    1711 ..    1691    1711 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.8
  RNA_pol_Rpb1_R   7 ySPtSP 12 
                     +S tSP
      CCD22371.1 472 LSVTSP 477
                     799999 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.053
  RNA_pol_Rpb1_R    3 TSP....aySPtSPgY 14  
                      TSP    + +PtSPg+
      CCD22371.1 1520 TSPfgayGDAPTSPGF 1535
                      7888855557999997 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0022
  RNA_pol_Rpb1_R    2 PTSP........aySPtSPgY 14  
                      PTSP        ++SPtSPgY
      CCD22371.1 1530 PTSPgfggvsspGFSPTSPGY 1550
                      677777777777********9 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 1.6e-05
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1544 SPTSPGYSPTSPSY 1557
                      9************9 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00029
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1558 SPTSPSYSPTSPSY 1571
                      9************9 PP

  == domain 6  score: 10.6 bits;  conditional E-value: 0.00029
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1572 SPTSPSYSPTSPSY 1585
                      9************9 PP

  == domain 7  score: 13.0 bits;  conditional E-value: 5e-05
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1586 SPTSPSYSPTSPTY 1599
                      9************9 PP

  == domain 8  score: 9.2 bits;  conditional E-value: 0.0008
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP ySPtSP+Y
      CCD22371.1 1593 SPTSPTYSPTSPSY 1606
                      9************9 PP

  == domain 9  score: 10.8 bits;  conditional E-value: 0.00025
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1600 SPTSPSYSPTSPSY 1613
                      9************9 PP

  == domain 10  score: 10.5 bits;  conditional E-value: 0.00031
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1607 SPTSPSYSPTSPSY 1620
                      9************9 PP

  == domain 11  score: 10.7 bits;  conditional E-value: 0.00028
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1614 SPTSPSYSPTSPSY 1627
                      9************9 PP

  == domain 12  score: 10.5 bits;  conditional E-value: 0.00033
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1621 SPTSPSYSPTSPSY 1634
                      9************9 PP

  == domain 13  score: 10.7 bits;  conditional E-value: 0.00028
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1628 SPTSPSYSPTSPSY 1641
                      9************9 PP

  == domain 14  score: 10.5 bits;  conditional E-value: 0.00032
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1635 SPTSPSYSPTSPSY 1648
                      9************9 PP

  == domain 15  score: 10.7 bits;  conditional E-value: 0.00028
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1642 SPTSPSYSPTSPSY 1655
                      9************9 PP

  == domain 16  score: 12.8 bits;  conditional E-value: 5.7e-05
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1649 SPTSPSYSPTSPTY 1662
                      9************9 PP

  == domain 17  score: 9.3 bits;  conditional E-value: 0.00078
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP ySPtSP+Y
      CCD22371.1 1656 SPTSPTYSPTSPSY 1669
                      9************9 PP

  == domain 18  score: 10.7 bits;  conditional E-value: 0.00028
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1663 SPTSPSYSPTSPSY 1676
                      9************9 PP

  == domain 19  score: 10.7 bits;  conditional E-value: 0.00028
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1670 SPTSPSYSPTSPSY 1683
                      9************9 PP

  == domain 20  score: 10.6 bits;  conditional E-value: 0.00029
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSP+Y
      CCD22371.1 1677 SPTSPSYSPTSPSY 1690
                      9************9 PP

  == domain 21  score: 14.4 bits;  conditional E-value: 1.8e-05
  RNA_pol_Rpb1_R    1 SPTSPaySPtSPgY 14  
                      SPTSP+ySPtSPgY
      CCD22371.1 1684 SPTSPSYSPTSPGY 1697
                      9************9 PP

  == domain 22  score: 2.9 bits;  conditional E-value: 0.083
  RNA_pol_Rpb1_R    1 SPTSPaySPt.......SPgY 14  
                      SPTSP+ySPt       SP+Y
      CCD22371.1 1691 SPTSPGYSPTtgsyspgSPTY 1711
                      9****7777777775558887 PP

>> DUF4123  Domain of unknown function (DUF4123)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.6e-05      0.17      28      89 ..    1173    1236 ..    1153    1248 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.6e-05
     DUF4123   28 s..LyagtpaeeladvaPyLvrlepnsevd.sqllesaltralieegagkswgiflaSkapleal 89  
                     L+ ++++++l  ++P+L+rle ++ +  +++l+  ++ + i+e  ++++ + ++S+ ++e+l
  CCD22371.1 1173 HfsLLDDETEQSLDRQSPWLLRLELDRAAMnDKDLTMGQVGERIKETFRNDLFV-IWSEDNAEKL 1236
                  24499*******************994433023333333333444444444444.5777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.13u 0.30s 00:00:01.43 Elapsed: 00:00:00.52
# Mc/sec: 9953.23
//
Query:       CCD22372.1  [L=215]
Description: hypothetical protein NDAI_0A02140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-21   75.5   1.2    4.5e-21   74.3   1.2    1.7  1  Scm3      Centromere protein Scm3


Domain annotation for each model (and alignments):
>> Scm3  Centromere protein Scm3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   1.2   2.5e-25   4.5e-21       1      54 []     123     174 ..     123     174 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 2.5e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHSG..GGSS--B-TTT-SB-XXXXXXXXXXX CS
        Scm3   1 lallreesderlkkrwesifeKYeridfedqgDEIDlatgeivvDnGhlrelrd 54 
                 ++++++++de++k++w +i++KYe++  e qgD IDl+tgei++DnGh+r+l++
  CCD22372.1 123 VMERHKKADETMKEVWTNIINKYESV--ETQGDLIDLKTGEIIEDNGHIRGLQH 174
                 699**********************9..779********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1225  (0.0683251); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1540.31
//
Query:       CCD22373.1  [L=789]
Description: hypothetical protein NDAI_0A02150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.7e-128  427.9  29.8   5.7e-128  427.6  29.8    1.1  1  Sugar_tr  Sugar (and other) transporter
    6.4e-21   74.7  31.8    4.2e-15   55.5  10.1    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.6  29.8  6.4e-132  5.7e-128       4     452 .]     102     556 ..      99     556 .. 0.92

  Alignments for each domain:
  == domain 1  score: 427.6 bits;  conditional E-value: 6.4e-132
                 HHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHH.HHHHH-TTTTS CS
    Sugar_tr   4 vaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvig.avlqaaakgkn 100
                 ++a+gg+lfgYdtg+i++ + +  + ++   ++++     +++++++ivs+++ G ++G+l a +++d +GRkk++++ +a++f+ig + lq+aa    
  CCD22373.1 102 FVAVGGFLFGYDTGLINSLIDMEYVKTHLAPNHEYF----TTIQMSMIVSFLSMGTFFGALSAPFIADSYGRKKTIIFsTAFIFSIGkNSLQVAAS--- 193
                 689*******************99555544444443....4689**********************************8899*****446777777... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylv 199
                  + +l+ gR+++GigvGl+s++vP y++E A k+lRga++s yq+ait+G lv++ +  g+ +++n+  +ri++glq+v++ +l+i++lflPESPry+v
  CCD22373.1 194 DWKLLLGGRIVSGIGVGLISAVVPSYQAESAQKNLRGAIISTYQWAITIGLLVSSAVSQGTLNMRNSGSYRIPIGLQYVWSCFLAIGMLFLPESPRYYV 292
                 8************************************************************999999******************************** PP

                 HTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH..........HTTHHHHSH......HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHH CS
    Sugar_tr 200 ekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.....kaswkellsskt...vrqrlligvvlqifqqltGinaimyysptifenlglsksl 290
                 +k++ ++a ++l+ lrg + +d++l ee  +++a+ + e     +++w+++++s +   +  r+++g+++q fqq++Gin+i+yy+ ++f+n+g+ +s+
  CCD22373.1 293 MKDELDKAAKSLSFLRGITIQDPRLLEELVEIKATYDYEasfgpSTFWDCFKTSPNrpkQSLRMFTGIAIQTFQQFSGINFIFYYGVNFFNNTGVAESY 391
                 *****************96666655555555555544445566************9999999************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHH CS
    Sugar_tr 291 lvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskala 389
                 lv+i +++vn+v+ + ++flv+ +GRR++ll+G+++ +i  +i++     +++ s  a+ v+i+fi++fia+f+++wg+v+wv+++El+p++vRsk++a
  CCD22373.1 392 LVSITTYAVNVVFNIPGMFLVEMVGRRKILLFGGLIVTISNFIIA--SVGCSTDSIIANKVMIAFICVFIAAFSASWGGVVWVISAELYPLGVRSKCTA 488
                 ********************************************9..55555555689***************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHCHHH.....T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 390 iavavnwlanflisllfpiiteaig.....ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 i++a+nwl+nf++++++p+++++ +     g+++f++++gl++l++i+v+f+v+et g+tleei+el+
  CCD22373.1 489 ICAATNWLINFICAFITPFLVDTGShtstmGAKIFFIWGGLNALGVIVVYFTVYETGGLTLEEIDELY 556
                 ***********************9999**************************************986 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5  10.1   4.7e-19   4.2e-15       2     209 ..     104     349 ..     103     383 .. 0.76
   2 !   22.8  17.0   4.3e-09   3.9e-05      10     207 ..     366     575 ..     356     587 .. 0.70

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 4.7e-19
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg.....ispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslw.lllvlr 92 
                 ++++fl +++ +++++++ + +++++l      ++  ++++++++ + g+++++l + +++d +Gr++ +++ ++++f++g   l +a+s w lll +r
  CCD22373.1 104 AVGGFLFGYDTGLINSLIDMeYVKTHLApnheyFTTIQMSMIVSFLSMGTFFGALSAPFIADSYGRKKtIIFSTAFIFSIGKNSLQVAASDWkLLLGGR 202
                 7899****************9**999998888888888999***************************7777777888888333334699999****** PP

       MFS_1  93 vlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgg.lla..sslgWravfyilaivsllafvlfllllpeepperkrkspkeee 188
                 +++G+g g++ +++ ++ a+ + k+ rg  i+ ++ ++ +G ++  +++   l    s+++r +  +  + s+++++ ++l+lpe+p+    k + ++ 
  CCD22373.1 203 IVSGIGVGLISAVVPSYQAESAQKNLRGAIISTYQWAITIGLLVSSAVSQgTLNmrNSGSYRIPIGLQYVWSCFLAI-GMLFLPESPRYYVMKDELDKA 300
                 ******************************************999666652555444455**************999.559999999888877777776 PP

       MFS_1 189 ..........................kgtgpaplvp..awkallkdpvl 209
                                             + +a++ p   w  ++++p  
  CCD22373.1 301 akslsflrgitiqdprlleelveikaTYDYEASFGPstFWDCFKTSPNR 349
                 7777777777666666665555555533333333335566666666644 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 4.3e-09
       MFS_1  10 larsilgpalplalaedlgispseigllltl.yalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa.......sslw.lllvlrvlqGlg 98 
                  ++s +++++     + ++ ++ + + l+++  +++ +v+++p+++l++ +Grr++ll+g l+  ++ ++++ ++       +    ++++  v+ +++
  CCD22373.1 366 QQFSGINFIFYY-GVNFFNNTGVAESYLVSItTYAVNVVFNIPGMFLVEMVGRRKILLFGGLIVTISNFIIAsVGcstdsiiA-NKvMIAFICVFIAAF 462
                 455556666653.333344333333444555367778******************9999999999994555535254444533.343555555566666 PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWrav.....fyilaivsllafvlfllllpeepperkrkspkeee..kg 190
                 +++   ++ ++ a+++p   r++ +++ +a++ l   + + + ++l++ ++ +++     f+i +++ +l++++  +++++ ++   + ++++e+  k+
  CCD22373.1 463 SASWGGVVWVISAELYPLGVRSKCTAICAATNWLINFICAFITPFLVDTGSHTSTmgakiFFIWGGLNALGVIV--VYFTVYETGGLTLEEIDELytKS 559
                 6666666668999**********************************9999555556666***********886..77766666666666666655544 PP

       MFS_1 191 tgpaplvpawkallkdp 207
                 +  ++ ++ w ++ + +
  CCD22373.1 560 PNSFESAK-WNKIIRER 575
                 44444444.66666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       909  (0.0507); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 5157.74
//
Query:       CCD22374.1  [L=218]
Description: hypothetical protein NDAI_0A02160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-77  259.1   0.0    1.7e-77  258.8   0.0    1.1  1  Arf          ADP-ribosylation factor family
    1.4e-14   54.3   0.2    3.1e-14   53.2   0.1    1.6  2  Roc          Ras of Complex, Roc, domain of DAPkinase
    3.5e-14   52.7   0.0    6.2e-14   51.9   0.0    1.4  2  Ras          Ras family
    1.2e-13   50.9   0.0    1.6e-13   50.5   0.0    1.1  1  SRPRB        Signal recognition particle receptor beta subuni
    9.3e-12   44.8   1.0      6e-08   32.2   0.1    2.4  2  G-alpha      G-protein alpha subunit
    1.9e-09   37.2   0.0    2.9e-09   36.6   0.0    1.3  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
      3e-05   24.0   0.0    4.9e-05   23.4   0.0    1.3  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.011   15.4   0.2      0.019   14.6   0.2    1.4  1  SRP54        SRP54-type protein, GTPase domain
      0.055   13.6   0.4       0.13   12.4   0.4    1.9  1  AAA_33       AAA domain
      0.064   13.8   0.1       0.12   12.9   0.1    1.5  1  ABC_tran     ABC transporter
      0.067   12.5   0.1       0.11   11.7   0.1    1.6  1  6PF2K        6-phosphofructo-2-kinase
      0.093   12.3   0.1        9.6    5.7   0.1    2.1  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
      0.096   12.2   0.0       0.26   10.8   0.0    1.6  2  GTP_EFTU     Elongation factor Tu GTP binding domain
       0.11   12.4   0.0         16    5.4   0.0    2.1  2  RsgA_GTPase  RsgA GTPase
       0.13   12.8   0.1       0.21   12.1   0.1    1.4  1  AAA_18       AAA domain
       0.15   11.5   0.1       0.23   10.9   0.1    1.3  1  AAA_7        P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.8   0.0   1.5e-80   1.7e-77       2     174 ..      43     213 ..      42     214 .. 0.98

  Alignments for each domain:
  == domain 1  score: 258.8 bits;  conditional E-value: 1.5e-80
                 HHHHHGGTT.TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHH CS
         Arf   2 lsilaklklkkkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleea 100
                 ++++++l++ +ke+ril++GLD+aGKtT+l+klkl+e+ tt+PTigfnve++++kn++ftvwDvGGq+++R+lW++Y+++t++vifvvDs+dr+R+ ea
  CCD22374.1  43 SKLFSNLFG-NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEA 140
                 5789999*9.***************************************************************************************** PP

                 HHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 101 keeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 +e ++++l+e+el+++++lv+aNKqDlpea+s++e++e+lgl++++ +r++ iq+++a++gegl+eglewls +
  CCD22374.1 141 REVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIR-NRPWFIQSTCATSGEGLYEGLEWLSTN 213
                 **********************************************.************************986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.7   5.3e+03      14      34 ..      17      40 ..      17      53 .. 0.65
   2 !   53.2   0.1   2.8e-17   3.1e-14       1     119 [.      56     166 ..      56     167 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.7
                HHHHCHCT-CCC-E...EETTTTE CS
         Roc 14 sllkrfvedkfsek...ekstigv 34
                sl++ f+e++f+++   +++t+g+
  CCD22374.1 17 SLINIFIEGRFEDNivnRQTTMGL 40
                688888999998753324555554 PP

  == domain 2  score: 53.2 bits;  conditional E-value: 2.8e-17
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCH...H CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenl...k 96 
                 ++++vG  g+GKt+ l ++  +++  ++ +tig ++ t +             k++++ +WD++Gq+r+rsl ++y+r+ + +i+v+ds++ +++   +
  CCD22374.1  56 RILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVETVQ------------YKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIgeaR 141
                 699******************9996.568*****996543............25799*******************************88766542114 PP

                 HHHHHHHHHCS..SS-EEEEEE-TT CS
         Roc  97 eWlkelkkvag..kspvilvgnkiD 119
                 e ++ + ++ +  +++ ++ +nk D
  CCD22374.1 142 EVMQRMLNEDElrNAVWLVFANKQD 166
                 5555554433321556678889998 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.4   3.8e+03      14      28 ..      17      31 ..      16      40 .. 0.78
   2 !   51.9   0.0   5.5e-17   6.2e-14       2     131 ..      57     185 ..      56     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.4
                HHHHHHHHSSCSSSC CS
         Ras 14 slllrfvkdkFkeey 28
                sl++ f++++F+++ 
  CCD22374.1 17 SLINIFIEGRFEDNI 31
                789999999999865 PP

  == domain 2  score: 51.9 bits;  conditional E-value: 5.5e-17
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrv 100
                 +++vG  + GKt++l++   ++  +  ++Tig++  t    v+ k++++++wD  Gq++ +sl + yyr++eg++ v d ++r+   ++++ ++ + + 
  CCD22374.1  57 ILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNE 150
                 899******************9876.59***877654....45689***********************************************999999 PP

                 ST.TTSEEEEEEETTTGGG...G-SS-HHHHHHHH CS
         Ras 101 ae.envpivLvGnKvDlee...kravsteegeela 131
                  e +n + ++ +nK Dl e     +++++ g +  
  CCD22374.1 151 DElRNAVWLVFANKQDLPEamsAAEITEKLGLHSI 185
                 99888999999******985555555555555444 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   1.4e-16   1.6e-13       2     137 ..      53     180 ..      52     188 .. 0.90

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.4e-16
                 ---EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHH CS
       SRPRB   2 skpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEll 99 
                 ++ ++l+vGl  +GKT+++ +L  ++v +t   +  +  + ++   k+ ++t+ D+ G++++r+    +  + ++  g++fvvDS  d  ++ e  E +
  CCD22374.1  53 KEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIgFNVETVQY---KNISFTVWDVGGQDRIRSLWR-H--YYRNTEGVIFVVDSN-DRSRIGEAREVM 144
                 5678******************************889999999...*****************8554.4..58899********97.7778******** PP

                 HHHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHH CS
       SRPRB 100 yeilliteklkdavdiliACnKqelflakspklikdaL 137
                   +l + e l++av ++ A nKq+l  a s+  i ++L
  CCD22374.1 145 QRMLNEDE-LRNAVWLVFA-NKQDLPEAMSAAEITEKL 180
                 ****9999.8899987766.*************99988 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00013      0.15      21      45 ..      52      76 ..      32      81 .. 0.89
   2 !   32.2   0.1   5.3e-11     6e-08     185     281 ..      82     167 ..      77     174 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
                ..EEEEEEEESTTSSHHHHHHHHHH CS
     G-alpha 21 krevkllllGqseSGKsTilkqlkl 45
                ++e+++l++G ++ GK+T+l +lkl
  CCD22374.1 52 NKEMRILMVGLDGAGKTTVLYKLKL 76
                469*****************99985 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 5.3e-11
                 -----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHH CS
     G-alpha 185 rlktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlDi 281
                  ++t+G++  +++++ +++f+++dvgGq   r  W +++ +++ +iF+v           ++  +r+ e+ ++ + ++n+ +l+n+  ++f nK D+
  CCD22374.1  82 TIPTIGFNVETVQYK-NISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVD----------SNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDL 167
                 478999999999999.********************************97..........55669*****************************997 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   2.6e-12   2.9e-09       1     135 [.      56     179 ..      56     196 .. 0.84

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2.6e-12
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.leedletl 98 
                 ++L++G  g+GKt+    +  ++   ++++   ti  + ++v  ++n+ + +wD+gGq+++          + +rn + +i+V+D+++r+ + e+ e +
  CCD22374.1  56 RILMVGLDGAGKTT----VLYKLKLGEVITTIPTIGFNVETV-QYKNISFTVWDVGGQDRIRSL-----WRHYYRNTEGVIFVVDSNDRSrIGEAREVM 144
                 589**********8....45678888999999**********.699*************98766.....4899**************886466666666 PP

   Gtr1_RagA  99 keilealrqyspeakvfvlihKmDliqedereeifee 135
                 +++l++  +  ++a   v+ +K Dl + +  +ei e+
  CCD22374.1 145 QRMLNE--DELRNAVWLVFANKQDLPEAMSAAEITEK 179
                 666654..4567888999999*999988888887765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.4e-08   4.9e-05       1     113 [.      56     163 ..      56     164 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.4e-08
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek.glgkaflaleeadlillvvdas.eeklkpldeel 97 
                 +++ vG   +GK+t++ +l   ++i+      T+  n ++v++k+ +++++D+ G  +    +  +l +++ +  +++ +++vvd++ ++ + + +e +
  CCD22374.1  56 RILMVGLDGAGKTTVLYKLKLGEVIT---TIPTIGFNVETVQYKNISFTVWDVGG-QD----RIrSLWRHYYR--NTEGVIFVVDSNdRSRIGEAREVM 144
                 5899***************7665655...345788888888888999********.44....22356666664..578*******77633577777777 PP

                 HHHHHH...TTSEEEEEEE CS
    MMR_HSR1  98 eellee...akkplilvln 113
                 +++l+e   ++  +++ +n
  CCD22374.1 145 QRMLNEdelRNAVWLVFAN 163
                 7777665433333455555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.2   1.7e-05     0.019       3      21 ..      56      74 ..      54      79 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-05
                EEEEEESTTSSHHHHHHHH CS
       SRP54  3 villvGlqGaGKTttlaKL 21
                 il+vGl GaGKTt l KL
  CCD22374.1 56 RILMVGLDGAGKTTVLYKL 74
                59**************998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   0.00011      0.13       2      19 ..      57      74 ..      57     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
      AAA_33  2 vllvGlpGsGKstlaerl 19
                +l+vGl G+GK+t++ +l
  CCD22374.1 57 ILMVGLDGAGKTTVLYKL 74
                79***********98775 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00011      0.12      11      74 ..      54     118 ..      48     201 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00011
                 TSEEEEEESTTSSHHHHH.HHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTS CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  11 gekvaivGenGaGKStLl.kllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpel 74 
                   ++ +vG  GaGK+t+l kl +g++  t  +i ++ + +++++++++   +g      +l++++
  CCD22374.1  54 EMRILMVGLDGAGKTTVLyKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHY 118
                 567899**********8735668999999999988888888844444333333322224444444 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1    0.0001      0.11       7      53 ..      48      94 ..      42     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
                HHT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH CS
       6PF2K  7 tnlknsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyr 53
                + + n+++ i++vGL   gKt++  kl      ++++t  Fnv  ++
  CCD22374.1 48 NLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQ 94
                556788999*****************988888889999999987655 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0086       9.6       4      20 ..      58      74 ..      55      80 .. 0.86
   2 ?    4.5   0.0     0.021        24     112     162 ..     122     176 ..     113     189 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0086
                EEEESTTCCHHHHHHHH CS
        cobW  4 vltGflGsGKTtLlnhl 20
                +++G  G+GKTt+l +l
  CCD22374.1 58 LMVGLDGAGKTTVLYKL 74
                678999*******9876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.021
                 ECEEEEEEETTTH.....CCHCCHHHHHHHHHHTSSEEEE.E-HHHHCHC..HHHH CS
        cobW 112 ldavvavvDaknl....eaeeekieekaedqlaaadllvl.nKtDlldeeallekl 162
                  ++v++vvD++      ea+e  ++ + ed+l  a  lv+ nK Dl ++    +++
  CCD22374.1 122 TEGVIFVVDSNDRsrigEAREVMQRMLNEDELRNAVWLVFaNKQDLPEAMSA-AEI 176
                 5799******888888888888888899999999987664499999887744.443 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.6   1.8e+03       8      23 ..      59      74 ..      53      79 .. 0.74
   2 ?   10.8   0.0   0.00023      0.26      59     137 ..      89     170 ..      76     189 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.6
                EEESTTSSHHHHHHHH CS
    GTP_EFTU  8 iighvDhGKtTLtdrL 23
                ++g   +GKtT++ +L
  CCD22374.1 59 MVGLDGAGKTTVLYKL 74
                5566679****98766 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00023
                 EEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.STHHHHHHHHHHHHT.TTE...EEEEEESCGSTHH CS
    GTP_EFTU  59 aaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.vepqteevlrlalke.gvp...iivfiNKmDrlka 137
                 ++ ++  ++k+  +++ D  G     +   + +r ++g+++vvd+++       +ev++ +l+e +++     vf NK D ++a
  CCD22374.1  89 NVETV--QYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRsRIGEAREVMQRMLNEdELRnavWLVFANKQDLPEA 170
                 33344..4889999999999999989999999**************874455667776655554155566799*******9944 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.016        18     101     121 ..      56      76 ..      29      88 .. 0.79
   2 ?    5.4   0.0     0.014        16       4      71 ..     110     179 ..     108     217 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.016
                  EEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallp 121
                   +++vG  G+GK+t++ +l+ 
   CCD22374.1  56 RILMVGLDGAGKTTVLYKLKL 76 
                  46789**********999875 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.014
                  -S-EETTTTEES--EEEEEE.ESTTTT-..-HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHH CS
  RsgA_GTPase   4 RknelvrpkvaNvdqllivv.slkepel..slnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkee 71 
                  R  +l r+   N + ++ vv s ++ ++    + ++r+L + e +++  ++  nK Dl e ++ + e+ e+
   CCD22374.1 110 RIRSLWRHYYRNTEGVIFVVdSNDRSRIgeAREVMQRMLNEDELRNAVWLVFANKQDLPEAMS-AAEITEK 179
                  556666777777776655441444444422456799**********************99999.4444333 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00019      0.21       1      44 [.      57     106 ..      57     163 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00019
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.......gvnlrdvakenglllevdpe 44 
                 Il  G  G+GKtt+   L k++++       g+n+  v ++n + + +d  
  CCD22374.1  57 ILMVGLDGAGKTTVLYKL-KLGEVittiptiGFNVETVQYKNISFTVWDVG 106
                 7889**************.65556678888877766666666555555544 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00021      0.23      21      54 ..      42      76 ..      23      97 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
       AAA_7 21 rysyllelllknkkpvllvGptGtGKtviikd.ll 54
                  + + +l+ ++++ +l+vG  G GKt+++ +  l
  CCD22374.1 42 ASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKlKL 76
                5567788889999***************9988444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 1496.50
//
Query:       CCD22375.1  [L=120]
Description: hypothetical protein NDAI_0A02170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-15   57.0   3.7    1.4e-15   57.0   3.7    2.2  2  Ribosomal_L29    Ribosomal L29 protein
     0.0086   16.0   0.8      0.015   15.3   0.8    1.4  1  Phage_sheath_1C  Phage tail sheath C-terminal domain
  ------ inclusion threshold ------
       0.14   12.3   3.1       0.22   11.7   1.0    2.3  2  MRP-L47          Mitochondrial 39-S ribosomal protein L47 (MR
       0.39   10.4   5.9        4.6    6.9   0.9    2.1  2  DUF4972          Domain of unknown function (DUF4972)
       0.48    9.9   5.2       0.54    9.8   5.2    1.1  1  DUF3114          Protein of unknown function (DUF3114)
        1.6    9.3   5.4        1.3    9.6   1.0    2.2  2  DUF3644          Protein of unknown function (DUF3644)


Domain annotation for each model (and alignments):
>> Ribosomal_L29  Ribosomal L29 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   3.7   4.6e-19   1.4e-15       2      56 ..       8      60 ..       7      61 .. 0.97
   2 ?    0.7   0.7      0.18   5.4e+02       1      20 [.      78      97 ..      78     110 .. 0.68

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 4.6e-19
                   HHHHS-HHHHHHHHHHHHHHHHHHHHHHHHTSSS-CHHHHHHHHHHHHHHHHHHH CS
  Ribosomal_L29  2 elrelsdeeLkeklkelkkeLfnLrfqkatgqlenpsrirkvRkdIARikTvlre 56
                   elr +s+e+L+ +l +lkkeL +L++qk +     + +i +vRk+IAR++Tv+++
     CCD22375.1  8 ELRTKSKEQLESQLIDLKKELAELKVQKLSK--PSLPKINTVRKNIARVLTVINQ 60
                   9****************************99..789******************8 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.18
                   HHHHHS-HHHHHHHHHHHHH CS
  Ribosomal_L29  1 kelrelsdeeLkeklkelkk 20
                   k+lr++ +  L+  l + ++
     CCD22375.1 78 KDLRAKKTRALRRALTKFEA 97
                   67888888887777766554 PP

>> Phage_sheath_1C  Phage tail sheath C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.8   4.9e-06     0.015      10      60 ..      50     100 ..      43     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.9e-06
                      HHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHTTS CS
  Phage_sheath_1C  10 evirtldllrddirstfkkkylgkklnnddgralvksalnaylkelqrega 60 
                      ++ r+l ++++  r ++++ y+gkk+ ++d+ra  ++al+  l++ +  ++
       CCD22375.1  50 NIARVLTVINQQQRDAVRQLYKGKKYQSKDLRAKKTRALRRALTKFEATRI 100
                      789******************************999999999998887665 PP

>> MRP-L47  Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.0   7.3e-05      0.22      23      86 ..       4      60 ..       1      63 [. 0.81
   2 ?   -0.0   0.1      0.33   9.9e+02      20      38 ..      72      90 ..      60     116 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.3e-05
     MRP-L47 23 WaaeeLrkksfedLhklwyvllkekNmLlteeeellrkqekmpsperlkkvkesMeniktVlke 86
                 +a+eLr ks e+L++    l ke   L    +el+ +++++ps  +++ v++ ++++ tV+++
  CCD22375.1  4 VKAYELRTKSKEQLESQLIDLKKE---L----AELKVQKLSKPSLPKINTVRKNIARVLTVINQ 60
                5799***********944444444...5....6778889999999***************9975 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.33
     MRP-L47 20 graWaaeeLrkksfedLhk 38
                g+  + ++Lr k   +L++
  CCD22375.1 72 GKKYQSKDLRAKKTRALRR 90
                5555666666666666654 PP

>> DUF4972  Domain of unknown function (DUF4972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.4    0.0021       6.3      74     102 ..      11      39 ..       3      52 .. 0.83
   2 ?    6.9   0.9    0.0015       4.6      81     127 ..      56     102 ..      46     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0021
     DUF4972  74 eesraiLedaivklkesiakikegnkaea 102
                 ++s++ Le ++++lk+ +a++k ++  ++
  CCD22375.1  11 TKSKEQLESQLIDLKKELAELKVQKLSKP 39 
                 78********************9886655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0015
     DUF4972  81 edaivklkesiakikegnkaeaeeeadrlikeakkaieeFkatvrte 127
                 +   ++ +++++++ +g+k ++++  ++  ++  +a+ +F at+ te
  CCD22375.1  56 TVINQQQRDAVRQLYKGKKYQSKDLRAKKTRALRRALTKFEATRITE 102
                 5455677899************99999999999***********998 PP

>> DUF3114  Protein of unknown function (DUF3114)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.2   0.00018      0.54      63     164 ..      25     116 ..       8     120 .] 0.81

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
     DUF3114  63 wkelaklvqkafpkeslseeeelakriHqfRylissqqvqyvRehfkeegktDeqaLakylaskkkkvllrelkkfallesaRlHnKialkdnkviypd 161
                  kela+l  +   k sl + +++ k i  +  +i++qq   vR+ +k ++ + ++     l++kk + l r l+k   +e +R+ +K   +++++ +p+
  CCD22375.1  25 KKELAELKVQKLSKPSLPKINTVRKNIARVLTVINQQQRDAVRQLYKGKKYQSKD-----LRAKKTRALRRALTK---FEATRITEK--QRKKQIAFPQ 113
                 578888877777778999*9**************************877666544.....677788888888888...689999999..5677888887 PP

     DUF3114 162 gai 164
                 +++
  CCD22375.1 114 RKY 116
                 765 PP

>> DUF3644  Protein of unknown function (DUF3644)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.096   2.9e+02      38      63 ..      19      52 ..       4      59 .. 0.60
   2 ?    9.6   1.0   0.00042       1.3      19      54 ..      64      99 ..      56     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.096
     DUF3644 38 pktisLeeclkkvdkek........ddpvrkNle 63
                ++ i+L++ l +++ +k         ++vrkN+ 
  CCD22375.1 19 SQLIDLKKELAELKVQKlskpslpkINTVRKNIA 52
                5555666655555552223333552599999996 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00042
     DUF3644 19 kgiksiykkkrykknrdGnpktisLeeclkkvdkek 54
                + ++ +yk+k+y+ ++ +++kt  L+++l+k+++  
  CCD22375.1 64 DAVRQLYKGKKYQSKDLRAKKTRALRRALTKFEATR 99
                24888999999****9***************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2000  (0.111551); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.53
# Mc/sec: 686.97
//
Query:       CCD22376.1  [L=201]
Description: hypothetical protein NDAI_0A02180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-62  209.5   3.6    4.6e-62  209.3   3.6    1.0  1  Rho_GDI   RHO protein GDP dissociation inhibitor


Domain annotation for each model (and alignments):
>> Rho_GDI  RHO protein GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.3   3.6   2.6e-66   4.6e-62       6     195 .]       8     201 .]       3     201 .] 0.94

  Alignments for each domain:
  == domain 1  score: 209.3 bits;  conditional E-value: 2.6e-66
     Rho_GDI   6 eeeeeeeeekklklgpqkslkeqleldkdDesLrryKeqL.Lgsakvdleavetnepevkilkltilsserpdevleldlted..leklkkkaftlkeg 101
                  +e e++++ k+k++++k+l+e+++ld++DesL+r+K++L L s+ + le    ++++v+i+k+++l ++++ +++++dlt++   ++l +k +++ke+
  CCD22376.1   8 FQEFEDSQNDKYKVTAKKTLDEYKKLDAEDESLARWKKSLgLDSDVLPLE-FPGDKRKVVIQKIQLLINTEK-SPITFDLTNEktIKELASKRYQIKEN 104
                 45666777789********************************9998876.59999***************9.********998888999********* PP

     Rho_GDI 102 seyklkisFkvsneivsGlkYvqtvwktgvkvdkskemlGsysPqqee...yeyeleeeeaPsGllarGsYsakskfvDDDkkvyleleysfeikkd 195
                 + yklki+Fkv++ei++Gl+Yvq ++k+g+ vdk +++lGsy+P++e    ye+el+e+eaPsG++arG+Ysa skf+DDDk+++l+l++ +ei k+
  CCD22376.1 105 AIYKLKITFKVQHEIITGLRYVQYIKKAGIAVDKIDDHLGSYAPNTEAkpyYEVELPESEAPSGFFARGNYSAVSKFIDDDKTTHLTLNWGVEIVKK 201
                 **********************************************98889*******************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.45
# Mc/sec: 1355.88
//
Query:       CCD22377.1  [L=364]
Description: hypothetical protein NDAI_0A02190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-34  119.7   0.4    3.5e-34  119.1   0.4    1.3  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.4   1.9e-38   3.5e-34       2     201 ..     106     297 ..     105     300 .. 0.92

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 1.9e-38
                  EEEEEESBTBTTCCTHHHHHHHHHHHH.HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl.lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygylg 89 
                  +++++gD+H     gq++dl++l++   +++ +++l++  GD+vdrg ++ e++ + +a +++yp+++ +l+GNHe         f++e+l+kyg+  
   CCD22377.1 106 PVTICGDIH-----GQFHDLMELFKIGgPCPDNNYLFM--GDYVDRGYYSVETVSFlVAMKIRYPNRITILRGNHEsrqitqvyRFYDECLRKYGS-- 194
                  799******.....**********8888888899****..*******8888888887**************************************8.. PP

                  HHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHH CS
  Metallophos  90 ifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgdea 183
                    +++w+++++ f+++p+ +l+++  k+++lhGg sp  ++++d+++ l++++e+p++g   d++++d        ++   g+   +rg+g +fg++ 
   CCD22377.1 195 --ANVWKMFTDLFDYFPITALVDN--KIFCLHGGlSPM-IETIDQVRELDRIQEVPHEGpmcDLLWSD--------PDDRGGWGISPRGAGFTFGQDI 279
                  ..889*******************..********4444.6****************************........666666666669********** PP

                  HHHHHHHTTESEEEEESS CS
  Metallophos 184 ledllkkygvdlvisGHt 201
                   e +   +g+dl+ ++H+
   CCD22377.1 280 SEQFNHTNGLDLIARAHQ 297
                  *****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2800.76
//
Query:       CCD22378.1  [L=1118]
Description: hypothetical protein NDAI_0A02200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-113  376.5   0.0   5.4e-113  375.9   0.0    1.3  1  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
    4.1e-97  324.6   0.1    6.7e-97  323.9   0.1    1.4  1  Hom_end_hint     Hom_end-associated Hint
      4e-46  155.8   0.0    8.8e-46  154.7   0.0    1.6  1  ATP-synt_ab_Xtn  ATPsynthase alpha/beta subunit N-term extens
      1e-40  138.3   0.2      3e-37  127.2   0.1    2.5  2  Hom_end          Homing endonuclease
      2e-15   57.1   2.5    4.6e-15   55.9   2.5    1.7  1  ATP-synt_ab_N    ATP synthase alpha/beta family, beta-barrel 
    3.4e-05   24.1   0.1       0.03   14.6   0.0    2.7  2  LAGLIDADG_3      LAGLIDADG-like domain
      4e-05   23.2   0.0    9.4e-05   22.0   0.0    1.5  1  Hint             Hint module
     0.0012   19.2   0.1     0.0033   17.7   0.1    1.8  1  Hint_2           Hint domain
  ------ inclusion threshold ------
      0.043   13.6   0.0      0.088   12.6   0.0    1.5  1  Vint             Hint-domain
       0.21   11.9   0.4       0.45   10.8   0.4    1.5  1  QVR              Sleepless protein


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.9   0.0    3e-116  5.4e-113       1     213 []     237     963 ..     237     963 .. 0.99

  Alignments for each domain:
  == domain 1  score: 375.9 bits;  conditional E-value: 3e-116
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEE.................................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................. RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvg.................................................. 48 
                  G+rvlDalfp+vqG++t+ipgafg+Gktvisqslsk+snsd +iiyvg                                                  
   CCD22378.1 237 GQRVLDALFPCVQGGTTCIPGAFGCGKTVISQSLSKYSNSD-TIIYVGcfakgtqvmmadgsdksieeiqigeqvmgkdgnprtvialprgketmyev 333
                  9****************************************.******************************************************** PP

                  .................................................................................................. CS
                  .................................................................................................. RF
  ATP-synt_ab  49 .................................................................................................. 48 
                                                                                                                    
   CCD22378.1 334 chitphrttsgenfgvmdyvcsgnhklvlrtpqnvtlttheldgqtytnvsyfaleesaygqivkkktksyqhqrhggkqetekkvneflatinpdsi 431
                  ************************************************************************************************** PP

                  .................................................................................................. CS
                  .................................................................................................. RF
  ATP-synt_ab  49 .................................................................................................. 48 
                                                                                                                    
   CCD22378.1 432 ewdveakdykklgydvkksshqminpvfkesgnliaklnelgfskeiapqmgwllgfwvgngsittssfsidsldtqlldriteygklfaltttsatn 529
                  ************************************************************************************************** PP

                  .................................................................................................. CS
                  .................................................................................................. RF
  ATP-synt_ab  49 .................................................................................................. 48 
                                                                                                                    
   CCD22378.1 530 hcrnysgsgnqdielskinngkvetdgtitfdddterepseqelidmessgckassemtvalgaplvrgnairqlltennvflkliesfgvrkengse 627
                  ************************************************************************************************** PP

                  .................................................................................................. CS
                  .................................................................................................. RF
  ATP-synt_ab  49 .................................................................................................. 48 
                                                                                                                    
   CCD22378.1 628 yvkaipmhlsyddievreqfiaglvdsighvkrtsngtiecaaistayksvseglirlarslgikvsvttkrecldkhnvkhqicysiclsgatlsga 725
                  ************************************************************************************************** PP

                  ...........................................................ESEEHHHHHHHHHHCHH........SS.GGGGEEEEEEE CS
                  ...........................................................xxxxxxxxxxxxxxxxx........xx.xxxxxxxxxxx RF
  ATP-synt_ab  49 ...........................................................iGergnevaevleefpe........gt.imkrtvlvant 78 
                                                                             +Gergne+aevl+efpe        ++ imkrt+lvant
   CCD22378.1 726 lrfcaldknnanskkpfvrgpvpfyftlkekdednyygitlpdstdkqyllsslalvhnCGERGNEMAEVLMEFPElfteqtgrKEpIMKRTTLVANT 823
                  ******************************************************************************998765227*********** PP

                  TTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEE.....TSSEEEEEEEEEEE-G CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx RF
  ATP-synt_ab  79 snepvaareasiytgitlAEyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagka.....pdrtGsvtivaavspa 171
                  sn+pvaareasiytgitlAEyfrdqgk+v++iads+srwaeAlreis+rlgempadqg+paylgaklas+yERagka     pdr Gsv+ivaavspa
   CCD22378.1 824 SNMPVAAREASIYTGITLAEYFRDQGKDVSMIADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGKAvalgsPDRIGSVSIVAAVSPA 921
                  ************************************************************************************************** PP

                  GCSTTSHHHHHHHHHSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 172 ggDfsdpvttatlgitdgfivLdkklaqrkhfPainvlvSvS 213
                  ggDfsdpvttatlgit++f++LdkklaqrkhfP+in++vS+S
   CCD22378.1 922 GGDFSDPVTTATLGITQVFWGLDKKLAQRKHFPSINTSVSYS 963
                  *****************************************9 PP

>> Hom_end_hint  Hom_end-associated Hint
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.9   0.1  3.7e-100   6.7e-97       1     228 []     284     783 ..     284     783 .. 0.99

  Alignments for each domain:
  == domain 1  score: 323.9 bits;  conditional E-value: 3.7e-100
                   CEETT-EEEBTTS-EEEGGG--TT-EEEBTTSSEEEEEE--EEEEEEEEEEE-SSSBHHSSST..-SEEEEETT-EEEEEEE-EEEEEEEEESTEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hom_end_hint   1 cFakgTevlmadGsdksiedievgekvmGkdGkpreVvalprgvetmYevkektkhraeeees..llsfvcnanHkLvlrtpqkiklterklrgkky 95 
                   cFakgT+v+madGsdksie+i++ge+vmGkdG+pr+V+alprg+etmYev+++t hr++++e+  ++++vc++nHkLvlrtpq+++lt+++l+g++y
    CCD22378.1 284 CFAKGTQVMMADGSDKSIEEIQIGEQVMGKDGNPRTVIALPRGKETMYEVCHITPHRTTSGENfgVMDYVCSGNHKLVLRTPQNVTLTTHELDGQTY 380
                   ******************************************************99999888778******************************** PP

                   EEEEEEEEEEEE-TTS-EEEEEEEEEEEEE.GGGTTHHHHHH.HHHHHTS-SSSEEEEEEEGGGGGGS-HHHHHH-EEEE--B---B-HHHHHHH.. CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Hom_end_hint  96 tsVtyfalekektedgrvieivkevtksfehesegkekaaek.akeFastidkeeiewtieardlkkleeevrkatqqlinPvlleseklaevle.. 189
                   t+V+yfale++++++     ivk++tks++h+ +g+++++ek ++eF++ti+ ++iew++ea+d+kkl+++v+k+++q+inPv++es++l ++l+  
    CCD22378.1 381 TNVSYFALEESAYGQ-----IVKKKTKSYQHQRHGGKQETEKkVNEFLATINPDSIEWDVEAKDYKKLGYDVKKSSHQMINPVFKESGNLIAKLNel 472
                   **************8.....*****************999988****************************************************** PP

                   ................................................................................................. CS
                   ................................................................................................. RF
  Hom_end_hint 190 ................................................................................................. 189
                                                                                                                    
    CCD22378.1 473 gfskeiapqmgwllgfwvgngsittssfsidsldtqlldriteygklfaltttsatnhcrnysgsgnqdielskinngkvetdgtitfdddtereps 569
                   ************************************************************************************************* PP

                   ................................................................................................. CS
                   ................................................................................................. RF
  Hom_end_hint 190 ................................................................................................. 189
                                                                                                                    
    CCD22378.1 570 eqelidmessgckassemtvalgaplvrgnairqlltennvflkliesfgvrkengseyvkaipmhlsyddievreqfiaglvdsighvkrtsngti 666
                   ************************************************************************************************* PP

                   ..............................................................................--EEE-EEEEEEEEEEEEE CS
                   ..............................................................................xxxxxxxxxxxxxxxxxxx RF
  Hom_end_hint 190 ..............................................................................eavpfkFelekkeedeyyG 208
                                                                                                  +vpf+F+l++k+ed+yyG
    CCD22378.1 667 ecaaistayksvseglirlarslgikvsvttkrecldkhnvkhqicysiclsgatlsgalrfcaldknnanskkpfvrGPVPFYFTLKEKDEDNYYG 763
                   ******************************************************************************9****************** PP

                   EEEETTS-SEEEBTTSBEEE CS
                   xxxxxxxxxxxxxxxxxxxx RF
  Hom_end_hint 209 itladesdkqfLlsnlalvH 228
                   itl+d++dkq+Lls+lalvH
    CCD22378.1 764 ITLPDSTDKQYLLSSLALVH 783
                   ******************** PP

>> ATP-synt_ab_Xtn  ATPsynthase alpha/beta subunit N-term extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.7   0.0   4.9e-49   8.8e-46       1     121 []     106     228 ..     106     228 .. 0.99

  Alignments for each domain:
  == domain 1  score: 154.7 bits;  conditional E-value: 4.9e-49
                      EETTS-BHHHHHHHHTS.BE-TT----SS-SSS-EEEEE.SS-TT-EEETT-EEEEEECTTCE.EEEEE--TT-EEEEEEE--EEEE-TTSECE CS
  ATP-synt_ab_Xtn   1 yDGiqrpLekiaeksgs.fierGvkvpaldrekkwefkp.kvkvgdkvsggdilGtvqeteli.ehkimvppkvegkvkeiaeegeytvedtia 91 
                      yDGiqrpL++i++ks+s +i+rG+++paldr+ +w+f+p k +vgd++sggdi+G++ e++l+ +hki++pp+++g++++ia++geytv+++i+
       CCD22378.1 106 YDGIQRPLKAIKDKSQSiYIPRGIDAPALDRKVTWHFNPgKYQVGDHISGGDIFGSIYENSLLeDHKILLPPRARGTITWIAPAGEYTVDEKIL 199
                      9**************************************************************99***************************** PP

                      EECETT.ECEEEESSEEEETTS---ESEEE CS
  ATP-synt_ab_Xtn  92 eveteegkekeltllqkwPvrkprpvkekl 121
                      eve+++ k+++++++++wPvr prpv+ekl
       CCD22378.1 200 EVEFDG-KTSDYSMYHTWPVRVPRPVAEKL 228
                      ***998.7********************97 PP

>> Hom_end  Homing endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0011       1.9      17      62 ..     484     526 ..     477     548 .. 0.87
   2 !  127.2   0.1   1.7e-40     3e-37       2     107 ..     632     740 ..     631     743 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0011
     Hom_end  17 FlaGLvdsdgyvkkekedsatvktedksvmegivklarsLGikasv 62 
                 +l+G+++++g+ ++    s+++++ d++++++i+++ +   ++++ 
  CCD22378.1 484 WLLGFWVGNGSITTS---SFSIDSLDTQLLDRITEYGKLFALTTTS 526
                 69*************...****************998777776655 PP

  == domain 2  score: 127.2 bits;  conditional E-value: 1.7e-40
     Hom_end   2 ipsflaseaievREaFlaGLvdsdgyvkkeked...satvktedksvmegivklarsLGikasvktkeekidakgvkhqfcyaitlsggdalksvlskc 97 
                 ip++l++++ievRE+F+aGLvds g+vk+++++   +a+++t +ksv+eg+++larsLGik+sv+tk+e+ d+++vkhq+cy+i+ls g++l++ l++c
  CCD22378.1 632 IPMHLSYDDIEVREQFIAGLVDSIGHVKRTSNGtieCAAISTAYKSVSEGLIRLARSLGIKVSVTTKRECLDKHNVKHQICYSICLS-GATLSGALRFC 729
                 9*******************************9**99**************************************************.*********** PP

     Hom_end  98 alakkrvea.k 107
                 al+k+++++ k
  CCD22378.1 730 ALDKNNANSkK 740
                 ****9998744 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   2.5   2.6e-18   4.6e-15       1      69 []      28      90 ..      28      90 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 2.6e-18
                   EEEEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N  1 ivqviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69
                   i++v+Gpv+ +e++ig  +++y++++v+  +  + l+g+++++++dk+ ++v+++t G+ +G++V rTG
     CCD22378.1 28 IYSVSGPVIVAENMIG--CAMYELVKVG--H--DNLVGEVIRIDGDKATIQVYEETAGVTVGDPVLRTG 90
                   789*************..**********..8..99*********************************9 PP

>> LAGLIDADG_3  LAGLIDADG-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0054       9.6       3      56 ..     481     529 ..     479     553 .. 0.81
   2 !   14.6   0.0   1.7e-05      0.03       2      63 ..     643     706 ..     642     721 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0054
                  HHHHHHHHHHHCCECCECSTTTTSEEEEES-HHHHHHHHHHHHHCT.HSCEEEE CS
  LAGLIDADG_3   3 kaafLrGlfdaDGsvskskkkgvsisltssskelledvqrlLlrlGIestiyek 56 
                  + ++L G++ + Gs+++s+      s+ s + +ll+ + ++ + + +++t  ++
   CCD22378.1 481 QMGWLLGFWVGNGSITTSS-----FSIDSLDTQLLDRITEYGKLFALTTTSATN 529
                  6789***************.....99**********999988888888877777 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.7e-05
                  HHHHHHHHHHHHCCECCECSTTTTS.EEEEES-HHHHHHHHHHHHHCT.HSCEEEE.EEE-SCC CS
  LAGLIDADG_3   2 vkaafLrGlfdaDGsvskskkkgvs.isltssskelledvqrlLlrlGIestiyek.kkakgrg 63 
                  v   f++Gl d+ G+v  +++++ +   ++++ k++ e++ rl   lGI+ ++++k    ++++
   CCD22378.1 643 VREQFIAGLVDSIGHVKRTSNGTIEcAAISTAYKSVSEGLIRLARSLGIKVSVTTKrECLDKHN 706
                  6678*******************99*************************99999963333333 PP

>> Hint  Hint module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   5.2e-08   9.4e-05       3      48 ..     275     320 ..     273     336 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.2e-08
                 TSHHHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Hint   3 esvaakkggCFpgestvtvedgeqkslseLepGdkVlavdesgevv 48 
                 +s+++ + gCF    +v+++dg+ ks++e+++G++V+  d++ ++v
  CCD22378.1 275 NSDTIIYVGCFAKGTQVMMADGSDKSIEEIQIGEQVMGKDGNPRTV 320
                 67788899*****************************999776665 PP

>> Hint_2  Hint domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   1.9e-06    0.0033       2      40 ..     284     323 ..     283     343 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.9e-06
      Hint_2   2 CflagtliatpeG.evaveeLrvGdlVvtadgglqpvrwi 40 
                 Cf++gt+++ ++G +  +ee+++G++V+ +dg++++v+  
  CCD22378.1 284 CFAKGTQVMMADGsDKSIEEIQIGEQVMGKDGNPRTVIAL 323
                 *************4478******************99865 PP

>> Vint  Hint-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.9e-05     0.088       1      53 [.     283     336 ..     283     345 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
        Vint   1 pCfagesrvklaegktvkiselrkgmkvqtpk.garkvaavlktkveeeelcrl 53 
                 +Cfa  ++v +a+g+ ++i+e++ g +v+ ++ ++r+v a+ + k +  e+c++
  CCD22378.1 283 GCFAKGTQVMMADGSDKSIEEIQIGEQVMGKDgNPRTVIALPRGKETMYEVCHI 336
                 6******************************95567776665555555555554 PP

>> QVR  Sleepless protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   0.00025      0.45      51      94 ..     694     736 ..     660     738 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00025
         QVR  51 eeavkRtCssklqiklelvdhvcmkeskkkkghlCfCekdkCNs 94 
                 + ++kR C +k ++k ++ + +c +  +  +g l fC  dk N+
  CCD22378.1 694 SVTTKRECLDKHNVKHQICYSICLSGAT-LSGALRFCALDKNNA 736
                 67899********************999.9********999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.43
# Mc/sec: 7793.51
//
Query:       CCD22379.1  [L=25]
Description: hypothetical protein NDAI_0A02210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-10   41.2  26.3    1.3e-10   41.2  26.3    1.0  1  Ribosomal_L41  Ribosomal protein L41


Domain annotation for each model (and alignments):
>> Ribosomal_L41  Ribosomal protein L41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2  26.3   7.1e-15   1.3e-10       1      25 []       1      25 []       1      25 [] 0.99

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 7.1e-15
  Ribosomal_L41  1 MraKWrKKRmrRLKrKRRKmRqRSK 25
                   MraKWrKKR rRLKrKRRK+R+RSK
     CCD22379.1  1 MRAKWRKKRTRRLKRKRRKVRARSK 25
                   ************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (25 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 202.18
//
Query:       CCD22380.1  [L=476]
Description: hypothetical protein NDAI_0A02220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.026   14.7   1.7      0.043   14.0   0.3    2.2  2  Augurin   Oesophageal cancer-related gene 4
      0.046   13.8   3.1      0.084   12.9   3.1    1.4  1  MARVEL    Membrane-associating domain
       0.45   10.6   4.7        0.1   12.7   0.8    2.1  2  Vma12     Endoplasmic reticulum-based factor for assembly of 


Domain annotation for each model (and alignments):
>> Augurin  Oesophageal cancer-related gene 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.56   3.3e+03      32      44 ..      99     111 ..      75     159 .. 0.55
   2 ?   14.0   0.3   7.2e-06     0.043      22      66 ..     266     310 ..     224     315 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.56
     Augurin  32 laklkrtkrnlwd 44 
                 l+ +kr + ++ d
  CCD22380.1  99 LNGIKRDHHQFRD 111
                 3333333333333 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7.2e-06
     Augurin  22 avkeskakeflaklkrtkrnlwdrsrpdvqqwiqqflylGfdeak 66 
                 + + s+ +e+l +l+++k +l +  + ++qqw   ++ lG d++ 
  CCD22380.1 266 SNRTSHRQEWLEELNKEKEKLRQLKQRKIQQWSPGLIRLGLDNQY 310
                 44567889**********************************986 PP

>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.1   1.4e-05     0.084      10     142 ..     316     459 ..     310     461 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.4e-05
      MARVEL  10 rilqlvfaiiilgliaslia.......kldqllgspssalnfavfvavfsflyalfllvlylfk.nsaftsilwplidlivdalaallwlvafialaag 100
                 ri+  ++++i lgl+    +          ++   +++++  a++v +++ +y++++    ++     +++ l+ + ++++d+l++++  +  ++  ++
  CCD22380.1 316 RIVIGILCLISLGLAVRIFQnssstipSI-SRSIPQQPSTIMAIVVNAVATVYTIYIAHDEFSGkPIGLRNPLHKIKLILLDLLFIIFSSANLALAFNA 413
                 55555555555555555555555544444.345566889999999999999999999999999999999999999999999999999988888888888 PP

      MARVEL 101 lrdisca......fe.snqysasltvrcgqaqaavafgflavllfaasa 142
                   d   +      +e    ++++ +  c++ +a + f f+a +++++++
  CCD22380.1 414 RYD---KlwvctdDEdTIHTVPKVSYICRKQKALSSFLFVALFMWVVTF 459
                 888...344665511656667777789********************97 PP

>> Vma12  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.8   1.7e-05       0.1      67     104 ..     342     379 ..     240     410 .. 0.77
   2 ?   -3.4   0.2       1.5   9.1e+03      88      98 ..     448     458 ..     438     469 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
       Vma12  67 aqelkevnrqlilvlNiliSvvavffavwialrsartp 104
                  +  +++ +q+++++ i++  va++++++ia + + ++
  CCD22380.1 342 PSISRSIPQQPSTIMAIVVNAVATVYTIYIAHDEFSGK 379
                 4557999************************9999766 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.5
       Vma12  88 vavffavwial 98 
                 ++v+ ++w+++
  CCD22380.1 448 LFVALFMWVVT 458
                 55555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1360  (0.0758548); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3553.87
//
Query:       CCD22381.1  [L=816]
Description: hypothetical protein NDAI_0A02230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-153  512.1  17.7   2.4e-153  512.1  17.7    1.5  2  Cullin           Cullin family
    3.9e-23   81.2   8.9    1.7e-22   79.2   1.0    4.3  4  Cullin_Nedd8     Cullin protein neddylation domain
     0.0086   16.4   0.1       0.12   12.8   0.0    3.0  3  Penicillinase_R  Penicillinase repressor
  ------ inclusion threshold ------
      0.055   13.0   0.1      0.055   13.0   0.1    3.4  4  Z1               Z1 domain


Domain annotation for each model (and alignments):
>> Cullin  Cullin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  512.1  17.7  5.3e-157  2.4e-153       1     614 [.      15     693 ..      15     697 .. 0.92
   2 ?   -2.2   0.1      0.26   1.2e+03      37      94 ..     738     795 ..     732     803 .. 0.71

  Alignments for each domain:
  == domain 1  score: 512.1 bits;  conditional E-value: 5.3e-157
      Cullin   1 Wekleeaiqeilk.knvskls............feelYravynlvlsk..................ekkqgekLydklkelieehlkellkellkeesd 68 
                 W++++++i++il  +n  ++s            ++e+Y+a+yn++++k                  +   g+++y+klk+++++++++ +k     +++
  CCD22381.1  15 WNFIQPGITQILGdDNSANSSitgvdkilsptmYMEVYTAIYNYCVNKsrssgqfntdkqtlnnqsSILVGSEIYEKLKKYLKKYVSSFQK-----NAH 108
                 899999999999523444444666777777777*************99***************9997789********************9.....78* PP

      Cullin  69 eelLkalkkeWedhktsmkmirdifmyldrvyvk.klp........svydlglelfrdhvfriklkdrlieallkliekeRegevidrsllksviemlv 158
                 e++L+++ ++W+++++++ ++++ f y++r+ v+ +          +v++l+l+++++ +f+ + +++l++++l++i++eR+g++i+r  + ++i++lv
  CCD22381.1 109 ESFLQFYVRRWKRFTIGAIFLNHAFDYMNRYWVQkE-RsdgkryifDVNTLCLMTWKEVLFD-PNSEQLVKEVLEQITAERDGNIIQRGNVITAIKSLV 205
                 ******************************998853.336777888***************8.889********************************* PP

      Cullin 159 elgedse.....dkkvYeeeFekafleateefYraeaeellaensvaseYlkkaeerleeEeervekyldsstkkkllevleeelikkhleelleeelk 252
                 +lg d +     + +vY + Fek+fl++tee+Y++ ++++la++ +++eY+ +a+e++++Ee+ +  y+d++tkk+l e+l+++lik+h+e+l ++ ++
  CCD22381.1 206 ALGIDPQdlkklNLNVYIQVFEKPFLKKTEEYYTSYSQNYLASH-SVTEYIFEAHELINREEKGMAMYWDDHTKKPLSETLNNVLIKNHIEQLEKN-FT 302
                 *****9977655555***************************98.666***********************************************9.** PP

      Cullin 253 klledekledLkrlykllsrv.dgleeLrkaleeyikeeg.kaivkdake...................kektedakkyveklLelkdkfdklvkeafn 330
                 +ll++++++++++l++l++r    l +L  a e+yik++g +ai++ +++                   + ++  +k+y++klL+++  f ++ +e+f+
  CCD22381.1 303 TLLDSRDHQKISALFTLMQRDfMLLPNLSVAYEQYIKQTGeEAISELIAShkaavmnssnenikknpnaAINSLPPKEYIKKLLDIYAIFRSITTECFK 401
                 ***988**************955*****************888888877799***************98778889************************ PP

      Cullin 331 ndkefekaldeafeefvnknkv..........nsksaellakYiDelLkkglkglseeeleekldkvlvlfryiedKDvFekyYkkhLakRLllgksas 419
                 nd+ f kald+a+++++n+n++          +sk+ae+lakY D+lLkk++k   e + + ++d+++++f++++dKD+Fe++Y++ +akRL++g+s+s
  CCD22381.1 402 NDSIFAKALDNACRSYINNNELaippgaprsaTSKTAEMLAKYSDQLLKKSTKP--EVTQDMSVDDIMMIFKFLTDKDAFESHYRRLFAKRLIHGTSTS 498
                 ******************9999****************************9887..78889************************************** PP

      Cullin 420 ddaEksmiskLkeecGseftskLegMfkDiklskdlnkefkeylee..ekkkkkkvdlsvkVLtagaWpterskesevsvklpeeledlieeFeefYks 516
                 d+ E+s+i++L++e ++e+  k+++Mf+D++lsk l+++f   +++  +   +k  dl+  +L +++Wp++ +   ev++klp++l+++++++ee Y++
  CCD22381.1 499 DEDEESIIQRLQSENSMEYAGKITKMFQDVRLSKILEEDFDVIIKKeqQVTGNKIPDLQPFILAENMWPFTYQ---EVEFKLPQDLQQSYKKLEEIYTE 594
                 *****************************************999987756666789*************6443...489******************** PP

      Cullin 517 khsgrkLtWlhslgsaelkatfpkk...kyelqvstfqmvvLllFndeeeklsyeeiqeatglpekeLkrtLqsLavakkarvLlkepks.k.dveptd 610
                 kh+gr L+Wl+ l+++el a ++k     + ++v++fqm++LllFn+ ++ l++e+iqeat+l+ +++ +++ +++   k+++L+++p+  +  ++p++
  CCD22381.1 595 KHNGRILKWLWPLCRGELSAAIGKPgrpAFHFTVTLFQMAILLLFNE-KDVLTLENIQEATNLNLQNIAAAMVPFI---KYKLLQQSPPGlEaLMKPDT 689
                 ************************4455679***************5.59*************************9...8********55433889999 PP

      Cullin 611 efsv 614
                 ef++
  CCD22381.1 690 EFKI 693
                 9987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.26
      Cullin  37 kkqgekLydklkelieehlkellkellkeesdeelLkalkkeWedhktsmkmirdifm 94 
                 +k  ++L ++ + ++e+ + ++ k + k+  +  + + + ++ ++++ +++mi++   
  CCD22381.1 738 EKIEKELNAERQIFLEACIVRIMKAKRKSPHSMLVNECIAQAHQRFNAKVSMIKKAID 795
                 5677788888888888888888887533333333556788999999999999998765 PP

>> Cullin_Nedd8  Cullin protein neddylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.12   5.3e+02      23      34 ..     173     184 ..     170     206 .. 0.78
   2 ?    1.2   0.1     0.086   3.9e+02      23      38 ..     287     302 ..     281     313 .. 0.75
   3 ?    1.0   0.0       0.1   4.6e+02      37      59 ..     358     384 ..     336     385 .. 0.69
   4 !   79.2   1.0   3.9e-26   1.7e-22       1      62 [.     747     808 ..     747     809 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.12
  Cullin_Nedd8  23 neLvsevieqls 34 
                   ++Lv+ev+eq+ 
    CCD22381.1 173 EQLVKEVLEQIT 184
                   79*******985 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.086
  Cullin_Nedd8  23 neLvsevieqlskrft 38 
                   n L++  ieql+k+ft
    CCD22381.1 287 NVLIKNHIEQLEKNFT 302
                   5567777777777776 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.1
  Cullin_Nedd8  37 ftpsiadik....krIesLiekeYleR 59 
                   ++ s++ ik      I+sL  keY+++
    CCD22381.1 358 MNSSNENIKknpnAAINSLPPKEYIKK 384
                   566788888666668**********85 PP

  == domain 4  score: 79.2 bits;  conditional E-value: 3.9e-26
  Cullin_Nedd8   1 dRklaiqaaIVRiMKsrktlshneLvsevieqlskrftpsiadikkrIesLiekeYleRden 62 
                   +R+  ++a+IVRiMK++++  h+ Lv+e+i+q ++rf+ ++++ikk I+sLi+k+Yl+R ++
    CCD22381.1 747 ERQIFLEACIVRIMKAKRKSPHSMLVNECIAQAHQRFNAKVSMIKKAIDSLIQKGYLQRCDD 808
                   6999*******************************************************875 PP

>> Penicillinase_R  Penicillinase repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         2   9.2e+03      17      32 ..     173     188 ..     167     208 .. 0.61
   2 ?   -1.8   0.0      0.89     4e+03      68      98 ..     334     363 ..     322     374 .. 0.78
   3 !   12.8   0.0   2.6e-05      0.12       8      64 ..     759     816 .]     752     816 .] 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
                      -EEHHHHHHT--GGG- CS
  Penicillinase_R  17 eatvkevveeleeeke 32 
                      e+ vkev e++ +e++
       CCD22381.1 173 EQLVKEVLEQITAERD 188
                      5667788877777655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.89
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Penicillinase_R  68 eeeavasavkqlldklfegsvkelvaafvee 98 
                       e++++++ ++ +++l++ s+k++v++  +e
       CCD22381.1 334 YEQYIKQTGEEAISELIA-SHKAAVMNSSNE 363
                      578999999999999996.888888776655 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 2.6e-05
                      HHHHHHHHS-.EEHHHHHHT--GGG---HHHHHHHHHHHHHTTS-EEEEETTEEEEE- CS
  Penicillinase_R   8 vmeilwekge.atvkevveeleeekelaysTVktllrrLvkKgllsrekegrafiYsp 64 
                      +m++ +++ + + v+e +++ +++ + + s +k  +  L +Kg+l+r  +g ++ Y +
       CCD22381.1 759 IMKAKRKSPHsMLVNECIAQAHQRFNAKVSMIKKAIDSLIQKGYLQRCDDGESYSYLA 816
                      55555555555889999999999*********************************76 PP

>> Z1  Z1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.37   1.7e+03      26      54 ..      80     108 ..      50     157 .. 0.62
   2 ?    2.6   0.9     0.018        82      44     117 ..     288     364 ..     243     376 .. 0.78
   3 ?   -2.7   0.0      0.77   3.4e+03      54      79 ..     570     595 ..     562     620 .. 0.71
   4 ?   13.0   0.1   1.2e-05     0.055       7      57 ..     749     798 ..     743     814 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.37
          Z1  26 nsmLvhvsrfkdeqekvaelieelleelk 54 
                 +s+Lv    +++ ++ +++ ++++ ++ +
  CCD22381.1  80 SSILVGSEIYEKLKKYLKKYVSSFQKNAH 108
                 44444444444444444444444444333 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.018
          Z1  44 elieelleelkkelkesaeekkeellkeleklweke.kts...tkseeeelsfeevkeelkealekievvvvNsskkk 117
                  li++ +e+l+k++++  +++++++++ l +l++++ +      + ++e++  ++ +e ++e + + + +v+Nss+++
  CCD22381.1 288 VLIKNHIEQLEKNFTTLLDSRDHQKISALFTLMQRDfM-LlpnLSVAYEQYIKQTGEEAISELIASHKAAVMNSSNEN 364
                 46888899999999888999999999999999999942.245423334444444467888888899999999999885 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.77
          Z1  54 kkelkesaeekkeellkeleklweke 79 
                  +e++ +  ++ ++++k+le++++++
  CCD22381.1 570 YQEVEFKLPQDLQQSYKKLEEIYTEK 595
                 56666667778888999999999887 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 1.2e-05
          Z1   7 kaFllavairrlrgqekkhnsmLvhvsrfkdeqekvaelieelleelkkel 57 
                 ++Fl a+ +r +++++k+ +smLv+++  +++q +++++++ + +++++ +
  CCD22381.1 749 QIFLEACIVRIMKAKRKSPHSMLVNECIAQAHQ-RFNAKVSMIKKAIDSLI 798
                 57999*********999*********9987655.56666666555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1265  (0.0705561); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 5937.38
//
Query:       CCD22382.1  [L=440]
Description: hypothetical protein NDAI_0A02240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-86  289.8   0.1    3.2e-86  289.2   0.1    1.3  1  HMGL-like  HMGL-like
  ------ inclusion threshold ------
      0.047   11.2   0.0      0.065   10.8   0.0    1.1  1  SidE       Dot/Icm substrate protein
      0.081   11.7   0.0        7.7    5.3   0.0    2.4  2  Trp_syntA  Tryptophan synthase alpha chain
      0.095   13.3   0.0       0.18   12.3   0.0    1.4  1  FliG_N     FliG N-terminal domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.2   0.1   7.1e-90   3.2e-86       2     264 .]      38     297 ..      37     297 .. 0.97

  Alignments for each domain:
  == domain 1  score: 289.2 bits;  conditional E-value: 7.1e-90
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B..--EE-SSHHHHHHHHH....TT-SEEEEEEES- CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkarilalvrarekdikaavealkgagakrvhvfiats 100
                 ++++d+tLR+Geq+++  +s+e+k++iakaLd++gvd+iE++ p+ase+++++++ai+k + ka+il+++r++++d ++ave    +g++ v+v+i ts
  CCD22382.1  38 FQLIDSTLREGEQFANSFFSTEKKIEIAKALDDFGVDYIELTSPVASEQSRKDCEAICKLGLKAKILTHIRCHMDDARVAVE----TGVDGVDVVIGTS 132
                 789*******************************************************************************....************* PP

                 HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHHHHHHHHS-.GGGEEEEEB CS
   HMGL-like 101 elhlkaklkkdreevakkaeeavkaarslgkdvelsledasrtdleflaevveaaeeaGatriniaDtvGvltPneaaelisalkervkdkvilsvHcH 199
                 ++ ++++++kd++++ak+a e++++++s+g+++++s ed+ r+dl +l+++++++ ++G++r+ iaDtvG+++P++++el+++lk++v+  +++++H+H
  CCD22382.1 133 KFLRQYSHGKDMNYIAKSAIEVIEFVKSKGIEIRFSSEDSFRSDLVDLLNIYKTVNKIGVNRVGIADTVGCANPRQVYELVRTLKSVVS--CDIECHFH 229
                 *****************************************************************************************..******** PP

                 -TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT...-B----HHHHHHHHHHH CS
   HMGL-like 200 ndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealg...vdtgldlqklrsiaalv 264
                 nd+G+A+an++ A+eaGa+ +d++v+G+Ger+G ++l  l+a + ++    v+++++l+k+r+i++lv
  CCD22382.1 230 NDTGCAIANAYCALEAGARLIDVCVLGIGERNGIVPLGGLMARMIVAApeyVKSKYKLHKIRDIENLV 297
                 *************************************666655555555*****************98 PP

>> SidE  Dot/Icm substrate protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.5e-05     0.065    1170    1231 ..     359     419 ..     349     435 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.5e-05
        SidE 1170 eklekklkkleeklydaylvevtkeisalekeksknltdvkkmisklndrlaeieqlrqeki 1231
                  +++++++ +l+ +l d  + evt +i++l + ++ n++dv ++i +++ +l++  +l+ +  
  CCD22382.1  359 NAIKSRVDQLNLNLTDDQVKEVTAKIKKLGDVRPLNIDDVDSIIKDFHTELST-PMLKPTSA 419 
                  5788999****************************************998764.45555555 PP

>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0049        22     127     153 ..      59      85 ..      53      94 .. 0.62
   2 ?    5.3   0.0    0.0017       7.7      25      52 ..     285     312 ..     268     314 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0049
                 CCHHHHHHHHHHTT-EEEEEE-TTS-H CS
   Trp_syntA 127 eeaeelveaakkkglelvflvapttsd 153
                 e++ e+ +a++++g++++ l++p +s+
  CCD22382.1  59 EKKIEIAKALDDFGVDYIELTSPVASE 85 
                 444555566666666666666665555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHCT-SSEEEE---S--TT CS
   Trp_syntA  25 qsleilkalekagadviElGlpfsdPla 52 
                   l+ ++ +e+  ad++E+ +pf +P+ 
  CCD22382.1 285 YKLHKIRDIENLVADAVEVNIPFNNPIT 312
                 456778899999**************95 PP

>> FliG_N  FliG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.1e-05      0.18      26      63 ..     371     411 ..     363     426 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.1e-05
                 TSXHHHHHHHHHHHHCHTTXXHH...HHHHHHHHHHHHHHC CS
      FliG_N  26 hLdeeeiekltkeiaslksvske...eveaVleefleelea 63 
                 +L++++++++t++i +l++v +    +v++++++f++el++
  CCD22382.1 371 NLTDDQVKEVTAKIKKLGDVRPLnidDVDSIIKDFHTELST 411
                 799****************998544499999*****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3205.79
//
Query:       CCD22383.1  [L=99]
Description: hypothetical protein NDAI_0A02250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-12   46.5   0.2    4.4e-12   46.3   0.2    1.1  1  IATP             Mitochondrial ATPase inhibitor, IATP
  ------ inclusion threshold ------
       0.01   14.4   0.2       0.01   14.4   0.2    1.0  1  FapA             Flagellar Assembly Protein A
      0.028   14.4   4.6      0.036   14.0   4.6    1.2  1  Sec2p            GDP/GTP exchange factor Sec2p
      0.046   13.8   0.4      0.066   13.3   0.4    1.2  1  DUF2730          Protein of unknown function (DUF2730)
       0.14   12.0   1.1       0.21   11.5   1.1    1.2  1  Glutaredoxin2_C  Glutaredoxin 2, C terminal domain
        1.5    7.5   8.9       0.36    9.5   4.3    1.8  2  FbpA             Fibronectin-binding protein A N-terminus (Fb


Domain annotation for each model (and alignments):
>> IATP  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.2   1.5e-15   4.4e-12      13      97 ..      16      92 ..       6      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 1.5e-15
        IATP 13 srpvsaasfsvaarrmgEgdsGapkgtGggGsireagdafgkrEaAsEeeyirqrekekLaeLkeklaeqkeHleeleeHieait 97
                ++p+  + +  ++r  +Eg +G+p+g+ +        d+f +rE+A+E+ ++rq+eke+ ++ ke+l+++++ le+le  i++++
  CCD22383.1 16 KSPLCITLIPKNTRMYSEGSVGSPRGGSE--------DSFLRRERAKEDFFVRQHEKEQFKHFKEQLKNHQKQLEHLESKIDKLS 92
                556666666677788899****9987665........******************************************999985 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   3.5e-06      0.01     321     368 ..      50      96 ..       8      99 .] 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.5e-06
        FapA 321 gtkteievgldepelkeklkeleeeleeleeeleklkkkikklpklka 368
                  ++ +  + ++ ++ ke++k ++e+l++ +++le l++ki+kl++ ++
  CCD22383.1  50 RERAKEDFFVR-QHEKEQFKHFKEQLKNHQKQLEHLESKIDKLSNGEK 96 
                 56777778888.99*****************************99555 PP

>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   4.6   1.2e-05     0.036      53      90 ..      61      98 ..      48      99 .] 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
                HHHHHHHTTHCHCCCHCTSSSSHHHHCTTTXXXXXXXX CS
       Sec2p 53 eklkeqLkeketlleslqeqLkeLkevlekmeeeseeq 90
                ++ keq k+ +++l+++q+qL++L +++ k+++ ++e+
  CCD22383.1 61 QHEKEQFKHFKEQLKNHQKQLEHLESKIDKLSNGEKES 98
                45689*************************99988775 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.4   2.2e-05     0.066      31      61 ..      63      93 ..      57      97 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
     DUF2730 31 kredleklaekveendkrlteletkvenLPt 61
                 +e+ ++ +e++++++k+l++le+k+++L +
  CCD22383.1 63 EKEQFKHFKEQLKNHQKQLEHLESKIDKLSN 93
                578899999*******************976 PP

>> Glutaredoxin2_C  Glutaredoxin 2, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.1   6.9e-05      0.21      33      71 ..      52      92 ..      45      98 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.9e-05
  Glutaredoxin2_C 33 sAre.yftkkkeksig.dfeellaktpeliaelnalLeele 71
                     +A+e  f++++ek+   +f+e l+++++ +++l++++++l+
       CCD22383.1 52 RAKEdFFVRQHEKEQFkHFKEQLKNHQKQLEHLESKIDKLS 92
                     55551566666665444********************9997 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.055   1.6e+02     124     140 ..       2      16 ..       1      18 [. 0.82
   2 ?    9.5   4.3   0.00012      0.36     274     324 ..      44      93 ..      19      99 .] 0.75

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.055
                 XEEEEEETTTEEEEESS CS
        FbpA 124 SNiiLvdeenkIidaik 140
                 SNiiLv+  ++++++ik
  CCD22383.1   2 SNIILVR--SQVLRSIK 16 
                 9*****6..56888888 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00012
                 XXXXSXHHHHHHHHTTTXXX--SHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        FbpA 274 kesfdslsealdeyYakkaerdrveqkrsdlekrveneleklekklkklek 324
                 ++sf   ++a ++++ ++ e++++++ +++l+++ +++le+le+k++kl++
  CCD22383.1  44 EDSFLRRERAKEDFFVRQHEKEQFKHFKEQLKNH-QKQLEHLESKIDKLSN 93 
                 5666666777788888888888888888888654.6778888888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2521  (0.14061); expected 358.6 (0.02)
Passed bias filter:                     1101  (0.0614089); expected 358.6 (0.02)
Passed Vit filter:                       153  (0.00853366); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 748.96
//
Query:       CCD22384.1  [L=345]
Description: hypothetical protein NDAI_0A02260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        6.3    6.6   6.6        5.2    6.9   3.7    2.3  2  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.11   1.9e+03      33      39 ..     120     126 ..     104     152 .. 0.58
   2 ?    6.9   3.7   0.00029       5.2      19      54 ..     157     192 ..     149     197 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.11
                 HHHHHHH CS
       DivIC  33 laklkae 39 
                 ++klk++
  CCD22384.1 120 IKKLKDD 126
                 3344444 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHHHHHHHHHHH.HHHHHHHHHCC-XXXX CS
       DivIC  19 ykqlkqeiaalqaelaklka.eneeLeaevkdLksde 54 
                  + +++++a+lq ++++ +a e + L++ev++L +d+
  CCD22384.1 157 HWTVQAQLAQLQSKNNERTAvETNLLKKEVELL-QDR 192
                 68899*******998877663667789******.564 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2630.97
//
Query:       CCD22385.1  [L=330]
Description: hypothetical protein NDAI_0A02270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-15   56.2   0.0    5.5e-15   55.2   0.0    1.6  1  Cyclin_N  Cyclin, N-terminal domain
    2.8e-05   24.6   0.1    2.8e-05   24.6   0.1    2.4  2  Cyclin    Cyclin


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   6.2e-19   5.5e-15      34     126 ..      53     149 ..      18     150 .. 0.91

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 6.2e-19
                 HHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CC......CHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N  34 lidwlvevaekfkltpetlflavnyldRflskksvpkd......klqlvgatcLllAaKveeisppkledlvyitdeafteeeilemErliLetLnfdl 126
                 l +++ +++ + ++++ tl+ + +yl ++    ++pk+      ++++++++cL+lAaK+ ++s+p  ++++ +td+    +e++++Er++Le++++++
  CCD22385.1  53 LSNFIKNLVMHSNVQTPTLMATSVYLSKLRL--IIPKNvygmetTRHRIFLGCLILAAKTLNDSSPLNKHWTKYTDGLLHIREVNTIERELLEYFEWNV 149
                 779************************9998..88888888899*****************************************************98 PP

>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   3.1e-09   2.8e-05      37     159 ..      12     147 ..       2     149 .. 0.75
   2 ?   -5.7   7.1         2   1.8e+04      23      54 ..     206     237 ..     192     329 .. 0.61

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.1e-09
                 ...................T--SS--SS-HHHHHHHHH............HHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHHH CS
      Cyclin  37 kqssshtkttfaqtpkessFatkavpaisigsylsrlq............kfgesaplvllgtliYldrivkrcvsealvvtsanihRllivallvatK 123
                 k+s sh+ + f  t+  s+ + k  ++i  ++  + ++             ++++++  l++t++Yl ++    + + +    ++ hR+ +  l  a K
  CCD22385.1  12 KKSVSHEMVHFLATNTASIIQVKKGNNIVTTENGIPIEipplsnfiknlvMHSNVQTPTLMATSVYLSKLRL-IIPKNVYGMETTRHRIFLGCLILAAK 109
                 556666666666666666666666655555555444445555555555559999****************99.7777777778899************* PP

                 HH-SS---HHHHHHHHT..S-HHHHHHHHHHHHHHTTT CS
      Cyclin 124 flvDlsysnekfakvgg..islkELnkLEidFlflvdF 159
                  l+D+s  n+++ k ++  + ++E+n +E + l   ++
  CCD22385.1 110 TLNDSSPLNKHWTKYTDglLHIREVNTIERELLEYFEW 147
                 ***************99666778*****9988876655 PP

  == domain 2  score: -5.7 bits;  conditional E-value: 2
                 -----------T.................... CS
      Cyclin  23 tasadsksnlensqkqssshtkttfaqtpkes 54 
                  +s+++++++  s+   s+   + ++++++ s
  CCD22385.1 206 RSSSNVSIPSMTSMATVSTMDSIRTNRSTHNS 237
                 55555555555544444422222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1191  (0.0664287); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2426.62
//
Query:       CCD22386.1  [L=825]
Description: hypothetical protein NDAI_0A02280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-98  326.9   0.0    2.8e-48  163.7   0.0    2.7  2  AAA              ATPase family associated with various cellul
    4.4e-25   87.2   6.7    1.2e-13   50.7   0.7    2.8  2  AAA_lid_3        AAA+ lid domain
    7.5e-19   67.7   0.4    2.1e-18   66.3   0.4    1.8  1  CDC48_N          Cell division protein 48 (CDC48), N-terminal
    2.7e-14   53.6   0.0      6e-07   29.7   0.0    2.8  2  AAA_2            AAA domain (Cdc48 subfamily)
    3.3e-14   53.0   0.1    1.5e-05   24.8   0.0    3.2  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    8.9e-13   49.0   0.3    0.00023   21.6   0.1    4.6  2  AAA_16           AAA ATPase domain
    1.1e-11   44.8   0.6    9.8e-06   25.6   0.1    3.9  2  AAA_5            AAA domain (dynein-related subfamily)
    3.4e-11   43.5   0.0    1.1e-05   25.6   0.0    2.6  2  AAA_33           AAA domain
    3.1e-09   36.5   0.0     0.0016   17.8   0.0    2.4  2  TIP49            TIP49 P-loop domain
      3e-08   34.0   3.4      0.081   13.2   0.0    4.5  4  AAA_22           AAA domain
    3.7e-08   33.0   0.0    9.2e-08   31.8   0.0    1.7  1  CDC48_2          Cell division protein 48 (CDC48), domain 2
    1.7e-07   31.3   0.0      0.024   14.7   0.0    3.3  3  AAA_14           AAA domain
    2.2e-07   31.3   0.0     0.0091   16.4   0.0    3.0  2  RNA_helicase     RNA helicase
      3e-07   30.0   0.3      0.025   14.0   0.0    2.6  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      9e-07   28.5   1.0       0.26   10.6   0.0    3.8  3  ATPase           KaiC
    9.5e-07   28.7   1.7    5.6e-05   23.1   0.2    3.0  2  Vps4_C           Vps4 C terminal oligomerisation domain
      1e-06   28.6   0.0      0.031   14.0   0.0    2.8  2  IstB_IS21        IstB-like ATP binding protein
    4.1e-06   27.4   0.0       0.15   12.6   0.0    3.1  2  AAA_18           AAA domain
    7.7e-06   25.8   0.3      0.088   12.5   0.0    3.1  2  AAA_24           AAA domain
      1e-05   25.1   0.1      0.084   12.4   0.0    2.7  2  AAA_7            P-loop containing dynein motor region
    1.5e-05   24.7   0.1        0.2   11.3   0.0    3.6  2  Sigma54_activat  Sigma-54 interaction domain
      2e-05   24.3   7.1       0.45   10.1   0.2    4.5  4  AAA_25           AAA domain
    2.2e-05   24.4   0.0      0.055   13.3   0.0    3.0  2  Bac_DnaA         Bacterial dnaA  protein
    3.9e-05   22.9   0.1       0.15   11.1   0.0    2.3  2  Parvo_NS1        Parvovirus non-structural protein NS1
    4.8e-05   22.9   0.5       0.19   11.2   0.1    2.4  2  PhoH             PhoH-like protein
    5.2e-05   23.5   0.0       0.55   10.5   0.0    2.8  2  AAA_28           AAA domain
    8.4e-05   23.0   0.1       0.56   10.6   0.0    3.3  2  AAA_17           AAA domain
    8.9e-05   23.0   0.1       0.15   12.6   0.0    3.8  2  ABC_tran         ABC transporter
     0.0001   21.6   0.0       0.11   11.6   0.0    2.7  2  DUF815           Protein of unknown function (DUF815)
    0.00017   21.5   0.0       0.79    9.6   0.0    2.5  2  AAA_3            ATPase family associated with various cellul
    0.00021   21.3   0.3       0.14   12.2   0.0    3.0  3  ResIII           Type III restriction enzyme, res subunit
    0.00026   20.9   1.5       0.96    9.2   0.0    3.1  3  AAA_11           AAA domain
    0.00029   20.8   0.0       0.53   10.3   0.0    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00057   19.2   0.0          1    8.5   0.0    2.5  2  DUF2075          Uncharacterized conserved protein (DUF2075)
    0.00099   19.1   0.1        2.2    8.2   0.0    3.4  3  NACHT            NACHT domain
     0.0015   18.3   0.4        2.3    7.9   0.1    2.6  2  AAA_30           AAA domain
     0.0023   18.3   0.4        2.9    8.2   0.0    3.1  2  AAA_19           AAA domain
     0.0031   17.4   2.4        2.8    7.8   0.1    4.1  3  ATPase_2         ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
      0.013   15.6   0.0        1.5    8.9   0.0    2.6  2  Sigma54_activ_2  Sigma-54 interaction domain
      0.017   14.4   0.0        7.3    5.8   0.0    3.0  2  Zeta_toxin       Zeta toxin
      0.017   14.5   0.1        2.2    7.6   0.0    2.3  2  IPT              Isopentenyl transferase
      0.028   14.2   0.5       0.28   11.0   0.2    2.6  2  eIF-1a           Translation initiation factor 1A / IF-1
      0.028   13.7   0.2        2.1    7.5   0.0    2.8  3  KAP_NTPase       KAP family P-loop domain
      0.029   13.6   0.0        5.3    6.1   0.0    2.4  2  NB-ARC           NB-ARC domain
      0.031   14.2   1.2        8.3    6.3   0.0    4.1  4  NTPase_1         NTPase
       0.04   13.6   0.0        2.7    7.6   0.0    3.2  2  Zot              Zonular occludens toxin (Zot)
      0.055   13.2   0.0        7.9    6.2   0.0    2.7  2  Cytidylate_kin   Cytidylate kinase
       0.13   11.3   0.4        5.2    5.9   0.0    2.5  2  AAA_6            Hydrolytic ATP binding site of dynein motor 
       0.16   11.4   0.0       0.49    9.8   0.0    1.7  2  UFD1             Ubiquitin fusion degradation protein UFD1
       0.53   10.7   3.5       0.79   10.2   2.6    1.7  1  Tankyrase_bdg_C  Tankyrase binding protein C terminal domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.7   0.0   7.7e-51   2.8e-48       1     131 [.     250     379 ..     250     380 .. 0.97
   2 !  160.3   0.0   8.4e-50     3e-47       1     132 []     523     654 ..     523     654 .. 0.97

  Alignments for each domain:
  == domain 1  score: 163.7 bits;  conditional E-value: 7.7e-51
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vl+yGppGtGKTl+a+ava+e+g+ f+ i+g+e++sk+ gese+++r+ f+ea+++a p i+fiDEid++a++r++++ e+e+rvv+qLlt +dg+k++
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNA-PAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKSR 347
                 79******************************************************9.****************************************7 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                  s+v+vi+atnrp+++dpal+r gRfdr++ i+
  CCD22386.1 348 -SNVVVIAATNRPNSIDPALRRfGRFDREVDIG 379
                 .66*************************99875 PP

  == domain 2  score: 160.3 bits;  conditional E-value: 8.4e-50
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkk 98 
                 vl+yGppGtGKTllakava+e++++f++++g+ells++ gese++ir++f++a++ a p+++f+DE+d++ak+r ++  ++ ++rvvnqLlte+dg++ 
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAA-PTVVFLDELDSIAKARgNSMGDGGSDRVVNQLLTEMDGMNA 620
                 79******************************************************9.****************77779999***************** PP

                 SSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  99 keskvivigatnrpdkldpallr.gRfdrkieiel 132
                 k++ v+vigatnrpd++dpa+lr gR+d+ i+++l
  CCD22386.1 621 KKN-VFVIGATNRPDQIDPAILRpGRLDQLIYVPL 654
                 755.***************************9985 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.7   3.2e-16   1.2e-13       1      41 [.     402     442 ..     402     448 .. 0.92
   2 !   38.9   0.7   1.6e-12   5.7e-10       3      44 ..     678     721 ..     676     724 .. 0.87

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 3.2e-16
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitme 41 
                 dvdl+ LA +T+Gy+GAD+a+lc eAa+  +r++++ i+ +
  CCD22386.1 402 DVDLEYLANETHGYVGADIASLCSEAAMQQIREKMDLIDLD 442
                 9***********************************98744 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 1.6e-12
   AAA_lid_3   3 dlkeLAerTeGySGADlaalcreAallAlrrgik..eitmedfe 44 
                  l+++A++++G+SGADl+ ++++Aa  A++++i+  +i +e  e
  CCD22386.1 678 ELEAIAKASQGFSGADLSYIVQRAAKFAIKESIEaqKIREEKEE 721
                 589******************************96448777655 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.4   5.8e-21   2.1e-18       2      84 ..      35     115 ..      34     117 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 5.8e-21
                 EEEECCS.S-CSSTTEEEE-HHHHHHHTS-TTSEEEEEC.CCC.EEEEEEEBSTTSTTTTEEEE-HHHHHHHT--TTEEEEEEEE- CS
     CDC48_N   2 LrVaeap.qedvgrgivridpedmeelglepgdvveieg.krk.TvaivwpaepedegkgiIrmdgvtRknagvsiGdkVtVrkae 84 
                 L V++a  +   ++++++i++++m++l+l++gd+v ++g krk Tv iv+ +++ +  +g  r+++v+R+n+++++Gd VtV+++ 
  CCD22386.1  35 LLVDDATnD---DNSVIAINSNTMDKLELFRGDTVLVKGkKRKdTVLIVLIDDELE--DGACRVNRVVRNNLRIRLGDLVTVHPCP 115
                 789999977...***************************9999*********9984..7*************************96 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   1.7e-09     6e-07       6     105 ..     250     343 ..     245     357 .. 0.85
   2 !   20.8   0.0   9.4e-07   0.00034       6     109 ..     523     621 ..     518     631 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 1.7e-09
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG----.---------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk.essgadvSregVqrdLLq 101
                 +l+ gp g+Gkt++a+a+a+   +     +  ++  e++     +   +++   +++  +ae++   i+++DEid i+pk ++++ +v r  V+  LL 
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANETGA----FFFLINGPEVMS----KMAGESESNLRKAFEEAEKNApaIIFIDEIDSIAPKrDKTNGEVER-RVVSQLLT 339
                 6899*****************995....99**********....77778888888888888888888*************6566666655.68888999 PP

                 HHH- CS
       AAA_2 102 ileg 105
                 +++g
  CCD22386.1 340 LMDG 343
                 9998 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 9.4e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----.---------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadvSregVqrdLLq 101
                 +l+ gp g+Gkt+laka+a   ++    ++i +   ell     e+e+ +     ++    +a+   +v+lDE+d i++  ++s  d  ++ V++ LL 
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEVSA----NFISVKGPELLSmwYGESESNIRDIFDKA----RAAAPTVVFLDELDSIAKArGNSMGDGGSDRVVNQLLT 613
                 799******************996....99999999999955555555555555444....345567************9999999999999******9 PP

                 HHH--EE- CS
       AAA_2 102 ileggtlt 109
                  ++g +++
  CCD22386.1 614 EMDGMNAK 621
                 99987665 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   4.2e-08   1.5e-05      36      99 ..     250     321 ..     244     372 .. 0.79
   2 !   24.5   0.0   5.2e-08   1.9e-05      35     102 ..     522     597 ..     492     643 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 4.2e-08
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvl......ekagdlaalltnleek..dvlfideihrlsra 99 
                 vl+yGpPG Gkt +a+ +a+e g+ +    gP +      e +++l   + + e++   ++fidei  ++++
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVmskmagESESNLRKAFEEAEKNapAIIFIDEIDSIAPK 321
                 9*******************************7633222223345555555555442369******988765 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 5.2e-08
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvl......ekagdlaalltnleek..dvlfideihrlsravee 102
                  vl+yGpPG Gkt lak +a+e+ +++ +  gP l      e ++++  ++ + ++    v+f+de+  +++a  +
  CCD22386.1 522 GVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELlsmwygESESNIRDIFDKARAAapTVVFLDELDSIAKARGN 597
                 69*******************************9855555556777888877665432268888888888776655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.3e-05    0.0046      19     132 ..     242     346 ..     220     353 .. 0.59
   2 !   21.6   0.1   6.5e-07   0.00023      25     107 ..     521     595 ..     511     627 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.3e-05
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeas 117
                 +    p+ vl +G++G+GK+ ++r++++   ++g++f+  +  +      +s  a    ++ l ++ ++++++a +  + +++++ +   ++  g+ ++
  CCD22386.1 242 IGIKPPRGVLMYGPPGTGKTLMARAVAN---ETGAFFFLINGPEV-----MSKMAGES-ESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTNGEVER 331
                 44455699*******************6...55666655555555.....22222222.3344444444444444444444444444444444444446 PP

      AAA_16 118 rllellkrllallsr 132
                 r+  +l  l++ +++
  CCD22386.1 332 RVVSQLLTLMDGMKS 346
                 666666666655555 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 6.5e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala..a 107
                   vl++G++G+GK+ l+++++++++++   f++ k  +l     +s++     + + +r++ d+a++a++       ++++a   
  CCD22386.1 521 KGVLFYGPPGTGKTLLAKAVATEVSAN---FISVKGPEL-----LSMWYGES-E-SNIRDIFDKARAAAPTVVFLDELDSIAkaR 595
                 689**********************99...999999999.....44544444.3.677777777555554444444444433343 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   2.7e-08   9.8e-06       1     136 [.     249     368 ..     249     370 .. 0.79
   2 !   14.1   0.1   9.8e-05     0.035       2     124 ..     523     634 ..     522     642 .. 0.61

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.7e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.....G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.....egeilvlDEveraesevlnsLlslleerrl 94 
                 +vl+ GppGtgK+ +a+ +a  +++ ++ +++++ +++     + ++             +a++      ++i+++DE++ + ++  ++ +   e+r +
  CCD22386.1 249 GVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNL------------RKAFEeaeknAPAIIFIDEIDSIAPKR-DKTNGEVERRVV 334
                 59********************************9987555444444............333333336789*********999874.677777788877 PP

                 E..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  95 lleeggelvkaknddllerfrviatanpldrslnelspalrs 136
                 +  ++ +l++  +    +++ via++n+++    +++palr+
  CCD22386.1 335 S--QLLTLMDGMKS--RSNVVVIAATNRPN----SIDPALRR 368
                 7..77777776663..3459*******999....99999986 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 9.8e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleegg 100
                 vl  GppGtgK+ la+ +a  + +++  v +++      l+  +   +++   +d   +  a  + +++lDE++ + ++  ns+    ++r +   ++ 
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEVSANFISVKGPE------LLSMWY-GESESNIRDIFDKARAAAPTVVFLDELDSIAKARGNSMGDGGSDRVVN--QLL 612
                 899***************999988888888776......333333.233333333333333446777777777777766666666666666655..444 PP

                 SEEE---......-EEEEEESS-- CS
       AAA_5 101 elvkaknddllerfrviatanpld 124
                 ++++  n  + +++ vi+++n++d
  CCD22386.1 613 TEMDGMN--AKKNVFVIGATNRPD 634
                 4444444..223366666666666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   3.1e-08   1.1e-05       2      80 ..     250     358 ..     250     407 .. 0.73
   2 !   15.1   0.0   5.3e-05     0.019       2      46 ..     523     569 ..     523     631 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 3.1e-08
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt............................dytrvldrlyqilnelarkalsag 70 
                 vl+ G+pG+GK+  a+ +++++g  ++l++ ++++++++g+ + +++                               +v+ r+  +l  l + + s+ 
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANETGafFFLINGPEVMSKMAGESESNLRkafeeaeknapaiifideidsiapkrdkTNGEVERRVVSQLLTLMDGMKSRS 348
                 79**********************999************966655555566666677777777777777776643223355666666656665555555 PP

      AAA_33  71 rnvildatnl 80 
                 + v++ atn+
  CCD22386.1 349 NVVVIAATNR 358
                 5555566654 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 5.3e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt 46 
                 vl+ G+pG+GK+ la+ ++ +    ++ +  ++l+++ +g+ + +++
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEVSanFISVKGPELLSMWYGESESNIR 569
                 799****************9988777778888888888876555554 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.3e-06    0.0016      51     106 ..     248     298 ..     238     353 .. 0.81
   2 !   16.2   0.0   1.3e-05    0.0046      50      95 ..     520     563 ..     514     576 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 4.3e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqalrks 106
                 r+vL+ Gp+gtGkt +a a+++e g    f  ++g ev s     +e    +lrk+
  CCD22386.1 248 RGVLMYGPPGTGKTLMARAVANETG--AFFFLINGPEVMSKMAGESES---NLRKA 298
                 89*********************99..78999*******998877774...45554 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkk 95 
                  ++vL+ Gp+gtGkt la a++ e++    f++++g e+ s+    
  CCD22386.1 520 SKGVLFYGPPGTGKTLLAKAVATEVS--ANFISVKGPELLSMWYGE 563
                 589**********************9..679999999999876555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00051      0.18       9      39 ..     251     272 ..     245     288 .. 0.79
   2 ?    5.8   0.0     0.044        16      72     125 ..     289     352 ..     279     358 .. 0.75
   3 !   13.2   0.0   0.00023     0.081       9      41 ..     524     547 ..     520     575 .. 0.74
   4 ?   -0.5   0.0       3.9   1.4e+03      85     112 ..     574     611 ..     562     630 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00051
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeer 39 
                 + +G++GtGKT+ +r ++++          +
  CCD22386.1 251 LMYGPPGTGKTLMARAVANET---------G 272
                 679**************9987.........4 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.044
      AAA_22  72 rlsseellealeqalraravielliiDEaqhlr....s......eealeeLrsllnl..srkgvql 125
                 + s++ l++a+e+a +++ +  ++ iDE++ +     +       +++++L +l++   sr++v +
  CCD22386.1 289 GESESNLRKAFEEAEKNAPA--IIFIDEIDSIApkrdKtngeveRRVVSQLLTLMDGmkSRSNVVV 352
                 46788899999999998888..**********8865415667778888888888886655555554 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 0.00023
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpe 41 
                 + +G++GtGKT+l++ ++ +          ++ 
  CCD22386.1 524 LFYGPPGTGKTLLAKAVATEV---------SAN 547
                 679**************9987.........333 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 3.9
      AAA_22  85 alraravielliiDEaqhlr.....s......eealeeL 112
                  +ra+a + ++ +DE + +      s      ++++++L
  CCD22386.1 574 KARAAA-PTVVFLDELDSIAkargnSmgdggsDRVVNQL 611
                 344444.59********9966544313344445555555 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.6e-10   9.2e-08       2      61 ..     135     197 ..     134     200 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.6e-10
                 .SCCCCH.HHHCCCTT..EEE-TTEEEEECCTCCCEEEEEEEECCCCSCEEECTSCCEEESTT CS
     CDC48_2   2 idgdema.ylkrqFlg..rpvtkGdlvvfefkgqeiklvVvstePkgpvgitetTeielgtkp 61 
                 + g++++  lk +F    rpv kGd + ++  +++++++Vv++eP + +++  +T i+ + +p
  CCD22386.1 135 LTGNLFDvFLKPYFVEayRPVRKGDHFIVRGGMRQVEFKVVDVEPEEYAVVAQDTVIHWEGEP 197
                 57999999*************************************************988887 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   6.7e-05     0.024       5      78 ..     250     320 ..     247     360 .. 0.72
   2 ?   -1.2   0.1       5.4   1.9e+03      54     111 ..     426     479 ..     394     484 .. 0.71
   3 !   12.2   0.0   0.00038      0.14       5      78 ..     523     593 ..     520     658 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.7e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelileklkeekktylflDEiqevpe 78 
                 +++ G+  +GKT +++ +++e       ++ in  +   k++ ++e +l +++ e  +++   ++f+DEi  +  
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANETG---AFFFLINGPEVMSKMAGESEsNLRKAFEEA-EKNAPAIIFIDEIDSIAP 320
                 6789999************9988...888888988888877666662445555554.455999*******99843 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 5.4
      AAA_14  54 elileklkeekktylflDEiqevpewekalkslvdegknldvivtGSnskllskeiat 111
                 e+ +++++e k+ ++ lDE     e+ + l   +d+    ++ +  Sn + l + + +
  CCD22386.1 426 EAAMQQIRE-KMDLIDLDEDEIDAEVLDSLGVTMDNF---KFALGNSNPSALRETVVE 479
                 444455544.889999999888888888888888855...888888888888776655 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00038
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpe 78 
                 ++  G+  +GKT l+k ++ e      +++ ++  +     + ++e++++ i++k+++   t++flDE   + +
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEVS---ANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAK 593
                 6678999*********9997777...77777777776666666666677777777555689*******999843 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00074      0.27       1      30 [.     250     279 ..     250     316 .. 0.82
   2 !   16.4   0.0   2.5e-05    0.0091       1      47 [.     523     572 ..     523     625 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00074
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkk 30 
                   +++yGp+g+GK+++a+ +a++    + l++
    CCD22386.1 250 VLMYGPPGTGKTLMARAVANETGAFFFLIN 279
                   679**************9998776654444 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 2.5e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...klkkkdsvysrnpeddfwdgY 47 
                   +++yGp+g+GK++lak +a++++ ++   k ++  s++++++e+++ d +
    CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEVSANFisvKGPELLSMWYGESESNIRDIF 572
                   689*******************9887666555555566666666554444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   0.00012     0.042      25      42 ..     250     267 ..     241     271 .. 0.89
   2 !   14.0   0.0     7e-05     0.025      23      43 ..     521     541 ..     511     548 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00012
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   +l++GppG+GKt++a+++
    CCD22386.1 250 VLMYGPPGTGKTLMARAV 267
                   89*************987 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7e-05
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlp 43 
                     +l++GppG+GKt+lak+++
    CCD22386.1 521 KGVLFYGPPGTGKTLLAKAVA 541
                   569***************986 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0016      0.57      15      37 ..     243     265 ..     236     271 .. 0.86
   2 ?    4.2   0.1     0.066        23     111     156 ..     295     346 ..     278     369 .. 0.65
   3 !   10.6   0.0   0.00072      0.26      13      38 ..     508     539 ..     486     548 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0016
      ATPase  15 GipegrvvlitGepGtGKtifal 37 
                 Gi   r vl++G pGtGKt++a 
  CCD22386.1 243 GIKPPRGVLMYGPPGTGKTLMAR 265
                 7888899**************96 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.066
      ATPase 111 laeaikeika...krvviDsitgl...ayeekeavaReilrqlvrvlkklgv 156
                 l++a +e +      + iD i+++     +++ +v R+ + ql++ + +++ 
  CCD22386.1 295 LRKAFEEAEKnapAIIFIDEIDSIapkRDKTNGEVERRVVSQLLTLMDGMKS 346
                 444444333322244555555555421566667789**********977764 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00072
      ATPase  13 k......gGipegrvvlitGepGtGKtifalq 38 
                 +       G+   + vl +G pGtGKt++a+ 
  CCD22386.1 508 HpdqytkFGLAPSKGVLFYGPPGTGKTLLAKA 539
                 0555555999999****************975 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.17        60      12      44 ..     434     471 ..     424     490 .. 0.73
   2 !   23.1   0.2   1.6e-07   5.6e-05      26      59 ..     745     778 ..     721     779 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.17
      Vps4_C  12 iemtwmdip.....sdkllePpvtlkDflkalkkarpt 44 
                 ++m + d++     ++ l    vt++ f+ al ++ p+
  CCD22386.1 434 EKMDLIDLDedeidAEVLDSLGVTMDNFKFALGNSNPS 471
                 4566666664454255555559*************998 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1.6e-07
      Vps4_C  26 ePpvtlkDflkalkkarptVskeDLekheeFTke 59 
                  P +t ++f +a+k+a+++Vs+++L+++e + ++
  CCD22386.1 745 VPFITKEHFAEAMKTAKRSVSDAELRRYEAYAQQ 778
                 5889**************************9987 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00052      0.19      48      70 ..     248     270 ..     237     351 .. 0.84
   2 !   14.0   0.0   8.7e-05     0.031      48      77 ..     521     550 ..     514     587 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00052
   IstB_IS21  48 enivllGpsGvGKshlaialgve 70 
                  ++++ Gp+G+GK+ +a a++ e
  CCD22386.1 248 RGVLMYGPPGTGKTLMARAVANE 270
                 57899**************9876 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 8.7e-05
   IstB_IS21  48 enivllGpsGvGKshlaialgveavragls 77 
                 +++++ Gp+G+GK+ la a+++e  ++ +s
  CCD22386.1 521 KGVLFYGPPGTGKTLLAKAVATEVSANFIS 550
                 6799****************9987666555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0     0.001      0.36       2      25 ..     251     292 ..     250     358 .. 0.62
   2 !   12.6   0.0   0.00042      0.15       1      35 [.     523     575 ..     523     659 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.001
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf.................g 25 
                 l  G+pG+GKt +a+++++++ +f                  
  CCD22386.1 251 LMYGPPGTGKTLMARAVANETgAFfflingpevmskmagesE 292
                 678***************999566766665443333333331 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00042
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.................gvnlrdvaken 35 
                 +l  G+pG+GKt lak+++ +  ++                   n+rd++ + 
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEVsANfisvkgpellsmwygesESNIRDIFDKA 575
                 6789**************98863334555555444445544444444444444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00025     0.088       5      77 ..     250     318 ..     247     364 .. 0.80
   2 !   10.0   0.0    0.0014      0.51       5      22 ..     523     540 ..     520     601 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00025
      AAA_24   5 iliyGpsgiGKTtlakel.gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDtidel 77 
                 +l+yGp+g+GKT +a+    ++ +f+ + +G   +    ++   s  +++++++e +++ +   +++iD id +
  CCD22386.1 250 VLMYGPPGTGKTLMARAVaNETGAFFFLINGPEVMSKMAGE---SESNLRKAFEEAEKNAP--AIIFIDEIDSI 318
                 799*************9984444555555556666666665...67778888887766666..67888888765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0014
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l yGp+g+GKT lak  
  CCD22386.1 523 VLFYGPPGTGKTLLAKAV 540
                 789************987 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0015      0.54      34      57 ..     248     271 ..     237     330 .. 0.83
   2 !   12.4   0.0   0.00024     0.084      33      62 ..     520     548 ..     510     562 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0015
       AAA_7  34 kpvllvGptGtGKtviikdllkkl 57 
                 + vl++Gp GtGKt++++ + ++ 
  CCD22386.1 248 RGVLMYGPPGTGKTLMARAVANET 271
                 679*************99988765 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00024
       AAA_7  33 kkpvllvGptGtGKtviikdllkkldkeky 62 
                 +k vl++Gp GtGKt+++k + ++++  ++
  CCD22386.1 520 SKGVLFYGPPGTGKTLLAKAVATEVS-ANF 548
                 688****************9998887.444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00057       0.2      23     109 ..     248     322 ..     236     371 .. 0.59
   2 !    7.9   0.0    0.0063       2.3      24      46 ..     522     544 ..     510     557 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00057
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCH.HHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS-HHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeell.eseLFGhekGaFtGAekekkGlfekadgGtlfLDeigelplel 109
                        vl+ G  GtGK+l+ara+ +++    + f  +n  ++ +++  ese     + aF  Ae        k    ++f+Dei ++ ++ 
       CCD22386.1 248 RGVLMYGPPGTGKTLMARAVANET---GAFFFLINGPEVMSKMAgESE--SNLRKAFEEAE--------KNAPAIIFIDEIDSIAPKR 322
                      569****************97654...466777776655444331111..23333444443........3445677777777776654 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0063
                      -EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  24 svlitGesGtGKellaraiheas 46 
                       vl  G  GtGK+lla+a+ ++ 
       CCD22386.1 522 GVLFYGPPGTGKTLLAKAVATEV 544
                      69***************997654 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.032        12      36      53 ..     250     267 ..     246     276 .. 0.86
   2 ?    4.6   0.1     0.059        21     130     176 ..     295     341 ..     273     354 .. 0.78
   3 !   10.1   0.2    0.0013      0.45      36      58 ..     523     545 ..     509     574 .. 0.79
   4 ?    5.3   0.1     0.037        13     128     183 ..     566     626 ..     548     630 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.032
      AAA_25  36 allaGapgtGKttlaldl 53 
                 +l +G+pgtGKt +a  +
  CCD22386.1 250 VLMYGPPGTGKTLMARAV 267
                 5789*********98655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.059
      AAA_25 130 vdaleaaieevegvrlvviDplsralggdensnsdv.galvealeria 176
                 +++  +++e+ + ++ + iD ++++ +   + n +v +++v++l  + 
  CCD22386.1 295 LRKAFEEAEK-NAPAIIFIDEIDSIAPKRDKTNGEVeRRVVSQLLTLM 341
                 4444556666.55***************777788877****9997765 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.0013
      AAA_25  36 allaGapgtGKttlaldlalava 58 
                 +l++G+pgtGKt la  +a +v+
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEVS 545
                 789************99999987 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.037
      AAA_25 128 advdaleaaieevegvrlvviDplsralggdensnsd......vgalvealeriarrtgaav 183
                 + ++++ +++++ + + +v +D l+++  +  ns  d      v++l++ ++ + +++++ v
  CCD22386.1 566 SNIRDIFDKARA-AAPTVVFLDELDSIAKARGNSMGDggsdrvVNQLLTEMDGMNAKKNVFV 626
                 567888999999.66*************9988888885555534666666666666666555 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   0.00015     0.055      37     198 ..     250     412 ..     244     433 .. 0.76
   2 ?    7.3   0.0      0.01       3.8      37      64 ..     523     550 ..     517     568 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00015
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-.SEEEEE-GGGGTT-H.HHHHH........HHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkv.DvLliDDiqflagke.ktqee........lfhtfna 125
                 +++yg+ G Gkt + +a++ne+      +    +++ e +++++   +++  ++f e  +++  ++ iD+i  +a k  kt+ e        l+++++ 
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANETG-----AFFFLINGPEVMSKMAGESESNLRKAFEEAEKNApAIIFIDEIDSIAPKRdKTNGEverrvvsqLLTLMDG 343
                 799*********99999998765.....5568899**********************9997725677*******9875244433112211115555566 PP

                 HHTTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTH.HHHHHHH- CS
    Bac_DnaA 126 lleegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeev.lefiaerv 198
                 +   ++ vv+++   P++++    r+  rf++   vdi  pd   rl++l+  i+++++++ ++v le++a++ 
  CCD22386.1 344 MKSRSNVVVIAATNRPNSIDPALRRF-GRFDRE--VDIGIPDATGRLEVLR--IHTKNMKLADDVdLEYLANET 412
                 666777899*******9998766554.688875..5666799999*99996..666777777777677777765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.01
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSS CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenape 64 
                 +++yg+ G Gkt L ka++ ev +n+ +
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEVSANFIS 550
                 799******************9998765 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0015      0.55     117     140 ..     250     273 ..     244     280 .. 0.87
   2 !   11.1   0.0   0.00042      0.15     117     138 ..     523     544 ..     518     549 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0015
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavpl 140
                 v++yGp+ tGkt +a+a a+ +  
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANETGA 273
                 899***************997765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00042
   Parvo_NS1 117 vwfyGpantGktnlaeaIakav 138
                 v+fyGp+ tGkt la+a a+ v
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEV 544
                 89***************99865 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0018      0.64      22      40 ..     250     268 ..     234     273 .. 0.85
   2 !   11.2   0.1   0.00053      0.19      22      43 ..     523     544 ..     511     551 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0018
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 v + Gp GtGKt++a a+a
  CCD22386.1 250 VLMYGPPGTGKTLMARAVA 268
                 7899***********9998 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00053
                 EEEE--TTSSTTHHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalavea 43 
                 v   Gp GtGKt+la a+a e+
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEV 544
                 6789*************99876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0     0.002      0.72       2      45 ..     250     298 ..     249     320 .. 0.70
   2 !   10.5   0.0    0.0015      0.55       2      23 ..     523     547 ..     522     592 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.002
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvv..pEaareileeklakgeda 45 
                 + + G+++tGKT +++a a++    +  +  pE++ ++  e   + ++a
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANEtgaFFFLIngPEVMSKMAGESESNLRKA 298
                 5789***************766432333367777777766655444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0015
      AAA_28   2 ivitGgestGKTtlleaLaar...g 23 
                 + + G+++tGKT l++a a +   +
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEvsaN 547
                 6799**************9654443 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0016      0.56       1      56 [.     253     309 ..     253     340 .. 0.70
   2 !    8.8   0.0    0.0057         2       1      48 [.     526     574 ..     526     671 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0016
                 EE-TTSSHHHHHHHHHHHHT..EEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekyg..fthlsaGdllreeakrgglakardemrklpleekke 56 
                 +G+PG GK+ +++ ++ + g  f  ++  +++ ++a ++++ + r+++++++++    
  CCD22386.1 253 YGPPGTGKTLMARAVANETGafFFLINGPEVMSKMAGESES-NLRKAFEEAEKNAPAI 309
                 7***************9997545667777888888877764.5666666655555444 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0057
                 EE-TTSSHHHHHHHHHHHHTEEEEEH.HHHHHHHHHTTTSHSSHHHHCT CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa.Gdllreeakrgglakardemrk 48 
                 +G+PG GK+ +++ ++ ++   ++s  G  l ++   ++ ++ rd ++k
  CCD22386.1 526 YGPPGTGKTLLAKAVATEVSANFISVkGPELLSMWYGESESNIRDIFDK 574
                 7****************99888877656555555544444455555555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.069        25       9      37 ..     245     273 ..     241     456 .. 0.54
   2 !   12.6   0.0   0.00042      0.15       5      68 ..     514     575 ..     511     629 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.069
                 ETTSEEEEEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkp 37 
                 k+ + v + G+ G+GK+ +++++a+++  
  CCD22386.1 245 KPPRGVLMYGPPGTGKTLMARAVANETGA 273
                 55566788999999999999999888654 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00042
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqep 68 
                 ++ l +++ v + G+ G+GK+ L+k++a +++  +  i ++g +l +    +++++i+ ++ ++
  CCD22386.1 514 KFGLAPSKGVLFYGPPGTGKTLLAKAVATEVS--ANFISVKGPELLSMWYGESESNIRDIFDKA 575
                 68899999*********************997..567777888877777777777777777774 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0079       2.8      52      81 ..     246     275 ..     192     366 .. 0.63
   2 !   11.6   0.0   0.00031      0.11      16      81 ..     474     548 ..     458     588 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeeg 81 
                 p + vL++G  GtGK  + +a+ ne+ +  
  CCD22386.1 246 PPRGVLMYGPPGTGKTLMARAVANETGAFF 275
                 66789******************9986654 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00031
      DUF815  16 lepveevdevklddLvgidkqkealvente.......qfle.g.lpannvLLwGarGtGKSslvkallneyaeeg 81 
                  e+v e  +v+++d+ g+d+ k++l+e +e       q+ + g +p++ vL++G  GtGK  l ka+ +e++++ 
  CCD22386.1 474 RETVVESVNVTWNDIGGLDEIKQELKETVEypvlhpdQYTKfGlAPSKGVLFYGPPGTGKTLLAKAVATEVSANF 548
                 4667777789999999999999999998863333333444422368899********************998875 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0022      0.79       2      78 ..     250     322 ..     249     363 .. 0.62
   2 !    9.2   0.0    0.0028         1       2      30 ..     523     551 ..     522     559 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0022
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappkt 78 
                 vl+ g PG++ktl+++a+a+  ++ f  i   p+++ s + G +  + ++  fe  +      +++ dei+  +pk 
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANETGAFFFLIN-GPEVM-SKMAGESESNLRK-AFEEAEKN-APAIIFIDEIDSIAPKR 322
                 7999****************9998887665.56666.4566665544433.23222222.23456666666666654 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0028
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vl+ g PG++ktll+ka+a+ ++++f  +
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEVSANFISV 551
                 788999*****************999766 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00038      0.14      22      85 ..     245     308 ..     218     356 .. 0.71
   2 ?    5.6   0.0      0.04        14      19      51 ..     498     547 ..     483     588 .. 0.78
   3 ?   -1.8   0.5       7.7   2.8e+03      96     122 ..     723     767 ..     696     792 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00038
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG..........G CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke......i 85 
                 k  + +l+  + GtGKTl+a +++ +         f+fl+++ ++++++  e ++ l +a++e      +
  CCD22386.1 245 KPPRGVLMYGPPGTGKTLMARAVANETG------AFFFLINGPEVMSKMAGESESNLRKAFEEaeknapA 308
                 556677788899******9987777665......59**************88777777776653333332 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.04
                 .....................TTSEEEEEESTTSTHHHHHHHHHHHH-S. CS
      ResIII  19 lks.................krdkrglikmaTGtGKTlvaaklierllkk 51 
                 lk+                    k +l+  + GtGKTl+a +++ +++ +
  CCD22386.1 498 LKEtveypvlhpdqytkfglAPSKGVLFYGPPGTGKTLLAKAVATEVSAN 547
                 555555555555555555556677889999**********8888777664 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 7.7
                 -...................-SEEEEEHHHHHHTH.......... CS
      ResIII  96 a............kekdstnkkilvttiqsldadseee......e 122
                 +            ++ ++++  + ++t + + ++++++       
  CCD22386.1 723 IemtdstetkpkiESDEDEEDPVPFITKEHFAEAMKTAkrsvsdA 767
                 122223333334456667777777888887777776655544440 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0027      0.96      20      41 ..     250     271 ..     227     310 .. 0.80
   2 !    8.2   0.0    0.0052       1.9      18      39 ..     521     542 ..     509     595 .. 0.77
   3 ?   -0.4   1.1       2.2     8e+02     125     164 ..     711     773 ..     658     799 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0027
      AAA_11  20 tliqGPPGtgKTktivellsql 41 
                 +l+ GPPGtgKT +  ++ ++ 
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANET 271
                 699*********8888777765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0052
      AAA_11  18 eitliqGPPGtgKTktivells 39 
                 + +l+ GPPGtgKT    ++  
  CCD22386.1 521 KGVLFYGPPGTGKTLLAKAVAT 542
                 44799*********55444444 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.2
      AAA_11 125 lakeiskeleklakelrafeeeeek..........................eklkkskekskskle 164
                  a++i++e+e+  ++++++e    k                          ++++  ++ + +++e
  CCD22386.1 711 EAQKIREEKEEDIEMTDSTET---KpkiesdedeedpvpfitkehfaeamkTAKRSVSDAELRRYE 773
                 223333333333333322222...122244444445555555544444333222222223333333 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0079       2.8      20      44 ..     248     272 ..     219     282 .. 0.77
   2 !   10.3   0.0    0.0015      0.53      19      51 ..     520     554 ..     491     562 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0079
                 EEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalg 44 
                 + +l++G+ G+GKT ++r++a++ g
  CCD22386.1 248 RGVLMYGPPGTGKTLMARAVANETG 272
                 3499****************99877 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0015
                 TEEEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve..evkSP 51 
                 ++ +l++G+ G+GKT l++++a ++  +  +vk P
  CCD22386.1 520 SKGVLFYGPPGTGKTLLAKAVATEVSANfiSVKGP 554
                 3459*******************998877777766 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0037       1.3       4      45 ..     250     284 ..     247     334 .. 0.68
   2 !    8.5   0.0    0.0028         1       4      41 ..     523     553 ..     520     593 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0037
     DUF2075   4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvl 45 
                 vl  G +GtGKt+++ ++++e         a +++ N+p+v+
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANET-------GAFFFLINGPEVM 284
                 6789***********9999998.......5555555555554 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0028
     DUF2075   4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvNh 41 
                 vl  G +GtGKt+++ ++++e+       +a+++sv +
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEV-------SANFISVKG 553
                 56689*************9999.......445555544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.031        11       3      23 ..     250     270 ..     248     273 .. 0.88
   2 ?    0.1   0.0       1.9   6.7e+02      76     132 ..     302     359 ..     283     376 .. 0.62
   3 !    8.2   0.0    0.0062       2.2       3      24 ..     523     544 ..     521     550 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.031
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 v++ G++G GKT +++ +a +
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANE 270
                 8999***********999875 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1.9
                 HCCSCCCEEEEEE-STT-SS-TCH............HHHHHCTTTTT--EEEEEEECCCH CS
       NACHT  76 llelperlLlilDglDelvtdlgq...kekqpvrtlLselirkkllpeasllltvrpral 132
                   +++  + + +D +D ++ + ++   + +++v   L +l+ + + +++ +++++ +++ 
  CCD22386.1 302 AEKNAP-AIIFIDEIDSIAPKRDKtngEVERRVVSQLLTLMDG-MKSRSNVVVIAATNRP 359
                 444444.445579999999988888884455555555588888.4444444444444444 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0062
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                 v+  G++G GKT L++ +a++ 
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEV 544
                 6789**************9986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0063       2.3      20      40 ..     249     269 ..     237     273 .. 0.81
   2 !    7.8   0.0    0.0067       2.4      21      42 ..     523     544 ..     507     554 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0063
      AAA_30  20 vavltGpAGtGKttalkalre 40 
                  +++ Gp+GtGKt + +a+++
  CCD22386.1 249 GVLMYGPPGTGKTLMARAVAN 269
                 56789**********999865 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0067
      AAA_30  21 avltGpAGtGKttalkalreaw 42 
                 ++  Gp+GtGKt + ka++  +
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEV 544
                 6778************997655 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2     0.028       9.9      11      31 ..     248     268 ..     240     309 .. 0.84
   2 !    8.2   0.0    0.0082       2.9       9      37 ..     519     547 ..     513     638 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.028
      AAA_19  11 kvllvtaGpGtGKTrvlkhiv 31 
                 + +l+ ++pGtGKT + +++ 
  CCD22386.1 248 RGVLMYGPPGTGKTLMARAVA 268
                 568899********9877765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0082
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvel 37 
                 ++k +l  ++pGtGKT + k++ +++ ++
  CCD22386.1 519 PSKGVLFYGPPGTGKTLLAKAVATEVSAN 547
                 67778999********9888776665554 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0077       2.8      22      80 ..     249     301 ..     237     354 .. 0.57
   2 ?    4.7   0.0     0.071        25      23      43 ..     523     543 ..     517     552 .. 0.83
   3 ?   -1.4   0.0         5   1.8e+03     119     160 ..     577     626 ..     549     631 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0077
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklek 80 
                  ++ YGp g GKt + + ++++        +++i+  e+ ++ + e+  e++ +k +e+
  CCD22386.1 249 GVLMYGPPGTGKTLMARAVANETG----AFFFLINGPEVMSKMAGES--ESNLRKAFEE 301
                 5789*********98888888873....4677777777777766666..2222222222 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.071
    ATPase_2  23 yfiYGpegsGKtaLlkeiien 43 
                 ++ YGp g GKt L k ++++
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATE 543
                 677***********9998876 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 5
    ATPase_2 119 k...iiiiiDelqklidlgln.....gaellvkeLlnliesltkekhlcv 160
                      ++++Del  + +   n     g+  +v++Ll+ ++   ++k+++v
  CCD22386.1 577 AaapTVVFLDELDSIAKARGNsmgdgGSDRVVNQLLTEMDGMNAKKNVFV 626
                 22337899999999995444477776777888888888877665555554 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0042       1.5      24      83 ..     250     320 ..     237     354 .. 0.73
   2 ?    3.8   0.0      0.16        59      24      46 ..     523     545 ..     518     597 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0042
                      EEEEEETT--HHHHHHCC--TTS-EE....--SSTTHHHH-H.......HHHHHHTTTSEEEEEE-TT--H CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwl....eifvverlaklp.......ldlleqakggtLylkdiadlsk 83 
                      v++ G++G+gk+l+Ar+ +++ g        + v+ + a +         +  e+  ++++++ +i+++ +
       CCD22386.1 250 VLMYGPPGTGKTLMARAVANETGAFFflinGPEVMSKMAGESesnlrkaFEEAEKNAPAIIFIDEIDSIAP 320
                      99******************999854111134444444433333342223333334788888888888765 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.16
                      EEEEEETT--HHHHHHCC--TTS CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsg 46 
                      v+  G++G+gk+l A++ + + +
       CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEVS 545
                      8999************9886654 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0      0.02       7.3      15      40 ..     246     271 ..     238     278 .. 0.89
   2 ?    4.8   0.0     0.041        15      19      51 ..     523     553 ..     517     561 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.02
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdel 40 
                  P  +l+ G pG GK+ +a+++++e+
  CCD22386.1 246 PPRGVLMYGPPGTGKTLMARAVANET 271
                 57889*****************9986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.041
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldp 51 
                 +l  G pG GK+ la+++++e+    n++ +++
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATEV--SANFISVKG 553
                 566699***************9..788887765 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0062       2.2       5      27 ..     251     273 ..     248     288 .. 0.93
   2 ?    4.4   0.1     0.061        22       5      31 ..     524     550 ..     521     552 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0062
         IPT   5 lifGatttGKtaeaiklaketga 27 
                 l++G+ +tGKt +a ++a+etga
  CCD22386.1 251 LMYGPPGTGKTLMARAVANETGA 273
                 89*******************97 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.061
         IPT   5 lifGatttGKtaeaiklaketgapviv 31 
                 l +G+ +tGKt  a ++a e +a  i+
  CCD22386.1 524 LFYGPPGTGKTLLAKAVATEVSANFIS 550
                 78******************9999887 PP

>> eIF-1a  Translation initiation factor 1A / IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       2.2   7.9e+02      20      50 ..      60      69 ..      46      90 .. 0.57
   2 ?   11.0   0.2   0.00079      0.28      28      53 ..      90     115 ..      74     124 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 2.2
                E.SSSSBEEEEE-HHHHCT----TT-EEEEE CS
      eIF-1a 20 lpdngkevlaeipgkfRnkiwikrGdyVlVe 50
                l+  g +vl+                    +
  CCD22386.1 60 LF-RGDTVLV--------------------K 69
                44.3444444....................3 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00079
                 EEEE-HHHHCT----TT-EEEEEE-T CS
      eIF-1a  28 laeipgkfRnkiwikrGdyVlVelsp 53 
                  +++++  Rn+ +i+ Gd V+V + p
  CCD22386.1  90 ACRVNRVVRNNLRIRLGDLVTVHPCP 115
                 6999******************9977 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.8   2.8e+03      18      43 ..     245     270 ..     233     280 .. 0.78
   2 ?    7.5   0.0     0.006       2.1     162     196 ..     293     329 ..     277     368 .. 0.71
   3 ?    2.6   0.0      0.18        66     157     192 ..     564     598 ..     532     602 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.8
  KAP_NTPase  18 atpivvgLygkWGsGKssllnklede 43 
                 ++p  v  yg+ G+GK+ +   + +e
  CCD22386.1 245 KPPRGVLMYGPPGTGKTLMARAVANE 270
                 566678999********997766655 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.006
  KAP_NTPase 162 admektLda..lqkrlVvviDdLDrceteevlqllea 196
                 +++ k++++  ++ + +++iD++D++ +++ ++  e+
  CCD22386.1 293 SNLRKAFEEaeKNAPAIIFIDEIDSIAPKRDKTNGEV 329
                 3344444445569*************99986665555 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.18
  KAP_NTPase 157 veelladmektLdalqkrlVvviDdLDrceteevlq 192
                  e+++ d++++ +a   + Vv++D+LD++ + + ++
  CCD22386.1 564 SESNIRDIFDKARA-AAPTVVFLDELDSIAKARGNS 598
                 45556666666666.8899*********98877655 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.044        16      23      43 ..     250     270 ..     245     275 .. 0.88
   2 ?    6.1   0.0     0.015       5.3      23      43 ..     523     543 ..     518     551 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.044
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 v ++G +G GKt +a+ + n+
  CCD22386.1 250 VLMYGPPGTGKTLMARAVANE 270
                 5689************99987 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.015
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 v ++G +G GKt lak +  +
  CCD22386.1 523 VLFYGPPGTGKTLLAKAVATE 543
                 678*************99877 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       3.4   1.2e+03      38      62 ..     163     187 ..     162     201 .. 0.81
   2 ?    1.9   0.0      0.52   1.9e+02       3      22 ..     251     270 ..     249     274 .. 0.84
   3 ?    0.4   0.0       1.5   5.5e+02      85     110 ..     295     321 ..     284     356 .. 0.70
   4 ?    6.3   0.0     0.023       8.3       6      32 ..     527     553 ..     523     557 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3.4
                 E-------EEEEEET.T--EEEEEE CS
    NTPase_1  38 vreggrrigFkivdlasgeegiLar 62 
                 vr g r++ Fk+vd++ +e +  a+
  CCD22386.1 163 VRGGMRQVEFKVVDVEPEEYAVVAQ 187
                 6888999********8777766665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.52
                 EEE--TTSSHHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlel 22 
                 ++ GppG+GKt + + v+++
  CCD22386.1 251 LMYGPPGTGKTLMARAVANE 270
                 567********999988875 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.5
                 HHHHHHHHH.HHH-EEEE---STTGGG CS
    NTPase_1  85 alealrkal.seadviviDEiGkmElk 110
                   +a+++a  + + +i iDEi ++  k
  CCD22386.1 295 LRKAFEEAEkNAPAIIFIDEIDSIAPK 321
                 34455555523444******9766555 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.023
                 --TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   6 GppGvGKtTlvkkvlellkssgvkvgG 32 
                 GppG+GKt l k v+ +++ + ++v+G
  CCD22386.1 527 GPPGTGKTLLAKAVATEVSANFISVKG 553
                 9*****************988888887 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0076       2.7       4      63 ..     251     315 ..     250     372 .. 0.80
   2 ?    2.1   0.0      0.36   1.3e+02       4      17 ..     524     537 ..     522     595 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0076
         Zot   4 lvtGapGsgKtsg..avkkdllp..alkegRkiitnidGlrlerieqvlgekvs.tarliridnp 63 
                 l +G+pG+gKt+   av ++     +l +g +++ ++ G    ++++ ++e+ + ++ +i+id+ 
  CCD22386.1 251 LMYGPPGTGKTLMarAVANETGAffFLINGPEVMSKMAGESESNLRKAFEEAEKnAPAIIFIDEI 315
                 78999999999761156665555666778999999999999999999999888878889998832 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.36
         Zot   4 lvtGapGsgKtsga 17 
                 l++G+pG+gKt+ a
  CCD22386.1 524 LFYGPPGTGKTLLA 537
                 899********865 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.098        35       5      26 ..     254     275 ..     250     280 .. 0.88
   2 ?    6.2   0.0     0.022       7.9       5      28 ..     527     550 ..     523     552 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.098
                     -STTSSHHHHHHHHHHHHT-EE CS
  Cytidylate_kin   5 GPagsGKssvaralaeklglky 26 
                     GP g+GK  +ara+a++ g+ +
      CCD22386.1 254 GPPGTGKTLMARAVANETGAFF 275
                     9***************998765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.022
                     -STTSSHHHHHHHHHHHHT-EEEE CS
  Cytidylate_kin   5 GPagsGKssvaralaeklglkyld 28 
                     GP g+GK  +a+a+a+++++++++
      CCD22386.1 527 GPPGTGKTLLAKAVATEVSANFIS 550
                     9*******************9986 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.015       5.2      34      69 ..     249     284 ..     237     291 .. 0.86
   2 ?    2.7   0.0      0.14        51      34      63 ..     522     551 ..     516     559 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.015
       AAA_6  34 ggapaGpagtGKtEtvkdLakalakqvvvfncsdql 69 
                 g  ++Gp gtGKt   + +a++ + +++++n  + +
  CCD22386.1 249 GVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVM 284
                 66789***********************99987766 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.14
       AAA_6  34 ggapaGpagtGKtEtvkdLakalakqvvvf 63 
                 g   +Gp gtGKt   k +a +++  ++ +
  CCD22386.1 522 GVLFYGPPGTGKTLLAKAVATEVSANFISV 551
                 55678*********9999999988777655 PP

>> UFD1  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       7.1   2.5e+03      68      95 ..      45      72 ..      37      83 .. 0.77
   2 ?    9.8   0.0    0.0014      0.49      67     164 ..      87     189 ..      66     196 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7.1
        UFD1 68 egtvylPewmmenlgleegdlveiesvs 95
                +  + + +  m++l+l  gd+v ++  +
  CCD22386.1 45 NSVIAINSNTMDKLELFRGDTVLVKGKK 72
                5567788889999999999999998655 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0014
        UFD1  67 eegtvylPewmmenlgleegdlveie.svslpkgkfvklqpqsedfldisd..pkavLekaLr.nfatLtkgdvieikyndkvyelkvlevkpes.avs 160
                 e+g + + + + +nl+++ gdlv+++   +++ ++ + + p   ++  ++      +L+  +   +  + kgd++ ++   +++e+kv++v+pe+ av 
  CCD22386.1  87 EDGACRVNRVVRNNLRIRLGDLVTVHpCPDIKYATRISVLPIADTIEGLTGnlFDVFLKPYFVeAYRPVRKGDHFIVRGGMRQVEFKVVDVEPEEyAVV 185
                 78999999999999999999999999445899999999999988887665411355677666558999*************************998998 PP

        UFD1 161 iiet 164
                   +t
  CCD22386.1 186 AQDT 189
                 8777 PP

>> Tankyrase_bdg_C  Tankyrase binding protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.6    0.0022      0.79      28      84 ..     700     752 ..     677     765 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0022
  Tankyrase_bdg_C  28 rrapvsrslrraesesaleeeedeawlfkdsteekasskkeesdeEekeetqsrrtr 84 
                      r a    +++++ + +++ ee++e+  ++dste+k++  +++ deE++  +  ++ +
       CCD22386.1 700 RAA--KFAIKESIEAQKIREEKEEDIEMTDSTETKPKI-ESDEDEEDPV-PFITKEH 752
                      333..3344567788999999***************97.7777888774.4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              50  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.45
# Mc/sec: 5504.69
//
Query:       CCD22387.1  [L=153]
Description: hypothetical protein NDAI_0A02290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-25   88.6   0.1    4.3e-25   88.3   0.1    1.1  1  HIT       HIT domain
    5.8e-08   33.2   0.6    8.2e-08   32.7   0.1    1.4  2  DcpS_C    Scavenger mRNA decapping enzyme C-term binding
  ------ inclusion threshold ------
      0.022   14.6   0.0      0.035   14.0   0.0    1.3  1  CwfJ_C_1  Protein similar to CwfJ C-terminus 1


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.1   7.2e-29   4.3e-25       2      97 ..      24     119 ..      23     120 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 7.2e-29
                 GCC-CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC-T CS
         HIT   2 keipstvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHviprre 97 
                 +eips +++e++ v+ fldi+p+++gh L+ipk h ++lh++++e la++l +++k+ k+l+ +  ++g++++ nng+ a+q+v h+H+H+ip+r+
  CCD22387.1  24 GEIPSFKLIETKTVFSFLDIQPTSEGHALIIPKYHGAKLHNIPDEHLADILPVTRKLTKVLGLDDDTTGYNLLQNNGKIAHQEVDHVHFHLIPKRD 119
                 79*******************************************************************************************986 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.1   1.4e-11   8.2e-08       4     105 ..      18     120 ..      16     126 .. 0.89
   2 ?   -3.3   0.0       2.1   1.2e+04      49      62 ..     136     149 ..     131     151 .. 0.67

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.4e-11
                 HHHHHTTSS-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T.-EEEEE--SCCCT--S-S--EEEEE CS
      DcpS_C   4 fnilakgkepervvyedekfvvlkDikpkaklhllvipkrdikslrdLtkehlpllkemrekakkvieekyne.vdaeelrvgvhyqPsvyhlHlHvis 101
                 f i++ g++p+  ++e++++  + Di+p ++ h l+ipk + ++l+++ +ehl  +  + +k+ kv+     + ++    + g  +++ v+h+H+H+i 
  CCD22387.1  18 FIIFITGEIPSFKLIETKTVFSFLDIQPTSEGHALIIPKYHGAKLHNIPDEHLADILPVTRKLTKVLGLDDDTtGYNLLQNNGKIAHQEVDHVHFHLIP 116
                 678899999999*****************************************99999999999998766655578888999***************98 PP

                 .... CS
      DcpS_C 102 ldfe 105
                 ++  
  CCD22387.1 117 KRDA 120
                 7655 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.1
                 GG--TTTTTHHHHH CS
      DcpS_C  49 rdLtkehlpllkem 62 
                  +L k h +llk++
  CCD22387.1 136 DKLGKYHKELLKKL 149
                 55667777887776 PP

>> CwfJ_C_1  Protein similar to CwfJ C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.9e-06     0.035      39     108 ..      41     116 ..      31     124 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.9e-06
                 ---S-SSTT-EEEEESS--SSTTSS-HHHHHHHHHHHHHHHHHHHHTT--EEEEEE-.......SSS-----EEEEE CS
    CwfJ_C_1  39 lpkgpLssgHvliipieHisallsldeevldeirkfrkalvkmykkqdkdavvfEis.......sersvHlaiqvip 108
                 l  +p s+gH liip  H ++l ++++e l +i    + l+k+    d d+  + +        +++  H++ ++ip
  CCD22387.1  41 LDIQPTSEGHALIIPKYHGAKLHNIPDEHLADILPVTRKLTKVLG-LDDDTTGYNLLqnngkiaHQEVDHVHFHLIP 116
                 4458889***************************99999999965.3445555554434355556777788888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1151.74
//
Query:       CCD22388.1  [L=313]
Description: hypothetical protein NDAI_0A02300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-41  142.6   0.0    2.3e-41  141.9   0.0    1.2  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9   0.0   1.3e-45   2.3e-41       2     292 ..      22     288 ..      21     289 .. 0.89

  Alignments for each domain:
  == domain 1  score: 141.9 bits;  conditional E-value: 1.3e-45
                   EEEE-SSS-ST...TS-HHHHHHHHHHHH.HTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgsk..eeiskeealellrral.eaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslk 95 
                   +g Gt   ++k  + +  +e ++ l++al   Gi ++D Ae+Y       ++ +alk+ +k r+e++i+ K     ++ +++l +en ++ l +slk
    CCD22388.1  22 IGTGTKWHHGKleSGKFSDELVDQLQYALtLPGIIHIDAAEMY---NTYPEVNKALKSTSKVRDEIFITDKY----YSGSPKL-TENPIAGLTKSLK 110
                   56677655555776666678888899999788***********...55566888******************....3333333.4577899****** PP

                   HHT-S-EEEEEE-S--TTS-.....HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHTT-EEEE CS
  Aldo_ket_red  96 rLgtdyvDllllHrpdpslp....sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynllreleeegllelckkkgvplia 188
                   +L++dyvDl+llH p+ + +     +ee+++ +e+l+k Gk+++iGvSnfsv+ l++++k  ++k+ ++q+e+n + + +  g++++c+++++ + a
    CCD22388.1 111 ELELDYVDLYLLHSPFITKEscgyTMEEAWKQMEKLYKDGKAKNIGVSNFSVDDLKRILKICEIKPQINQIEFNAFLQNQTPGIVKFCQDHDILVEA 207
                   *****************99999*************************************************************************** PP

                   BSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGGG----HHH CS
  Aldo_ket_red 189 ysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldalelklseee 285
                   ysplg   l++k + ++d++                    ++ ++elak++g+s  q+ lr+++  ++++ +i  + + e+++d  d ++++l++ee
    CCD22388.1 208 YSPLG--PLRKKPT-DRDPG------------------PFYQYIEELAKKYGKSEGQVLLRWVT--KRKILPITTSGKEERIKDAQDLFSFDLTSEE 281
                   ****9..5664444.44444..................679***********************..9****************************** PP

                   HHHHHHH CS
  Aldo_ket_red 286 vaeldel 292
                   v+++ +l
    CCD22388.1 282 VEKITKL 288
                   ***9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2287.70
//
Query:       CCD22389.1  [L=149]
Description: hypothetical protein NDAI_0A02310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-20   71.2   6.2    8.3e-20   70.7   6.2    1.2  1  Pmp3      Proteolipid membrane potential modulator


Domain annotation for each model (and alignments):
>> Pmp3  Proteolipid membrane potential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   6.2   4.6e-24   8.3e-20       1      48 [.      12      60 ..      12      61 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 4.6e-24
        Pmp3  1 dillillaiilPPlaValksG.csadllinilLtllgylPgviHAfyii 48
                d++l++la+++PP+aV+++sG +s+d+++n++Ltllg++Pg++HAfy+i
  CCD22389.1 12 DFILYILALFFPPVAVLIRSGfWSSDFFLNVILTLLGFMPGLVHAFYYI 60
                79*********************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1172.01
//
Query:       CCD22390.1  [L=406]
Description: hypothetical protein NDAI_0A02320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-14   51.0  41.7    1.2e-05   25.2   3.4    4.8  4  zf-CCHC     Zinc knuckle
     0.0013   18.5  45.5      0.017   14.9   3.9    5.3  5  zf-CCHC_2   Zinc knuckle
  ------ inclusion threshold ------
      0.014   15.1   3.4      0.014   15.1   3.4    4.5  5  zf-C2H2_10  C2H2 zinc-finger
        2.8    6.3  23.0        3.9    5.8  23.0    1.1  1  Mpp10       Mpp10 protein


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   5.4   9.1e-09   4.1e-05       1      18 []      74      91 ..      74      91 .. 0.95
   2 ?    0.5   4.0      0.17   7.4e+02       2      18 .]      93     110 ..      92     110 .. 0.78
   3 !   19.6   5.2   1.5e-07   0.00066       1      18 []     112     129 ..     112     129 .. 0.95
   4 !   25.2   3.4   2.6e-09   1.2e-05       2      18 .]     182     198 ..     181     198 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 9.1e-09
                SCTSSSSSSSSTTTTSTS CS
     zf-CCHC  1 rkCynCGepGHiardCpk 18
                +kC nC + GH++rdCp+
  CCD22390.1 74 PKCNNCSQRGHFKRDCPH 91
                59***************8 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.17
                 CTSSSSSS.SSTTTTSTS CS
     zf-CCHC   2 kCynCGep.GHiardCpk 18 
                  C +CG++  H++  Cpk
  CCD22390.1  93 ICTYCGSMdDHYSQHCPK 110
                 599***994488888886 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 1.5e-07
                 SCTSSSSSSSSTTTTSTS CS
     zf-CCHC   1 rkCynCGepGHiardCpk 18 
                 +kC nC+e GH+ ++Cp+
  CCD22390.1 112 IKCANCNENGHYRSQCPH 129
                 59***************8 PP

  == domain 4  score: 25.2 bits;  conditional E-value: 2.6e-09
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                  CynCG  GH+  dCp+
  CCD22390.1 182 YCYNCGVNGHFGDDCPE 198
                 7***************6 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   5.3   5.1e-05      0.23       5      20 ..      75      90 ..      75      91 .. 0.96
   2 !    7.7   2.4   0.00071       3.2       5      21 .]      93     110 ..      93     110 .. 0.95
   3 !   14.9   3.9   3.9e-06     0.017       5      20 ..     113     128 ..     113     129 .. 0.95
   4 ?    1.0   1.3      0.09     4e+02       6      14 ..     136     144 ..     135     151 .. 0.80
   5 !    7.4   2.2   0.00088         4       6      21 .]     183     198 ..     182     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.1e-05
   zf-CCHC_2  5 vChiCgkkGHyIqdCP 20
                +C+ C + GH+ +dCP
  CCD22390.1 75 KCNNCSQRGHFKRDCP 90
                7*************** PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00071
   zf-CCHC_2   5 vChiCgkkG.HyIqdCPt 21 
                 +C  Cg+   Hy q+CP+
  CCD22390.1  93 ICTYCGSMDdHYSQHCPK 110
                 79***************6 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 3.9e-06
   zf-CCHC_2   5 vChiCgkkGHyIqdCP 20 
                 +C  C+  GHy ++CP
  CCD22390.1 113 KCANCNENGHYRSQCP 128
                 6999************ PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.09
   zf-CCHC_2   6 ChiCgkkGH 14 
                 C +C++k H
  CCD22390.1 136 CTLCNSKRH 144
                 *****9855 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.00088
   zf-CCHC_2   6 ChiCgkkGHyIqdCPt 21 
                 C  Cg+ GH+  dCP+
  CCD22390.1 183 CYNCGVNGHFGDDCPE 198
                 778************6 PP

>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.9       0.3   1.3e+03       5      14 ..      75      84 ..      75      90 .. 0.80
   2 ?    0.9   0.8     0.089     4e+02       3      10 ..      91      98 ..      90     100 .. 0.86
   3 ?   15.1   3.4   3.2e-06     0.014       4      21 ..     112     129 ..     111     130 .. 0.92
   4 ?    0.6   1.7      0.11   4.7e+02       3      20 ..     133     150 ..     132     151 .. 0.89
   5 ?   -3.4   0.8       1.9   8.6e+03       5      14 ..     182     191 ..     180     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.3
  zf-C2H2_10  5 tCSYChetGH 14
                +C  C + GH
  CCD22390.1 75 KCNNCSQRGH 84
                5777****** PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.089
  zf-C2H2_10  3 kitCSYCh 10
                +++C YC 
  CCD22390.1 91 HVICTYCG 98
                799****6 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 3.2e-06
  zf-C2H2_10   4 itCSYChetGHtRAkCek 21 
                 i+C  C+e GH R++C  
  CCD22390.1 112 IKCANCNENGHYRSQCPH 129
                 99**************75 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.11
  zf-C2H2_10   3 kitCSYChetGHtRAkCe 20 
                 k+ C  C+   H R +C 
  CCD22390.1 133 KVYCTLCNSKRHARDRCP 150
                 788999**********95 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 1.9
  zf-C2H2_10   5 tCSYChetGH 14 
                  C  C   GH
  CCD22390.1 182 YCYNCGVNGH 191
                 5656777777 PP

>> Mpp10  Mpp10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  23.0   0.00088       3.9     169     332 ..     180     363 ..     156     375 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00088
       Mpp10 169 k................kkkkksvv...ddkFFkldemek.....flekeekkeerkk.eeeeddeeidyfedlssddedeeekksaedlkYeDF.Fdk 241
                 +                 ++++s v   d   F+ +++++     + +k +k  ++++ +   +d + +y ++ +++d+ + +++ ++d  Y+D+ Fd+
  CCD22390.1 180 RiycyncgvnghfgddcPERRSSRVpneDGSAFSGENLKEdmkreYFDKLDKYLQKRNnSYYGNDYDYNYGQNYTQNDNQNYNQNYNQDFDYNDYeFDD 278
                 25666777777777777555555556656666765555441111255666664444434667789999999999999999999999********98888 PP

       Mpp10 242 peekkkkkkkkkdeeeadeeeedeeeeeeeeeeeeeeeeeedleeedeeeeeeeeeedeeekeekkkveeekeeeeekSsfekrqeklqek 332
                     +++++++++++++++++ ++++ + ++++++ +++ ++ ++++   ++ ++++d  +++++++  ++++++++  +f + ++++++ 
  CCD22390.1 279 ALY-DDDNNNRNNKSNSKKRKRHDNTGDRNDSKRSRHSQGNNNNNNN---ANRSNRRD--RNKNQNNGIAQRNQQQHPLAFPRNNQNISNV 363
                 877.3334444444433333333332222333322222222222222...22222222..1122223335555555556666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2341  (0.130571); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.32s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 2698.42
//
Query:       CCD22391.1  [L=730]
Description: hypothetical protein NDAI_0A02330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-34  117.3   0.0    1.5e-33  116.2   0.0    1.5  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    4.3e-21   74.9   0.9      1e-20   73.6   0.9    1.7  1  HGTP_anticodon  Anticodon binding domain
    1.8e-15   56.7   0.0    4.8e-15   55.3   0.0    1.7  2  TGS             TGS domain
    4.2e-13   49.2   0.0    8.5e-13   48.2   0.0    1.5  1  tRNA_SAD        Threonyl and Alanyl tRNA synthetase second ad


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   3.4e-37   1.5e-33       5     178 ..     398     612 ..     394     613 .. 0.89

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 3.4e-37
                   ETTSEEEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTS.TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SCE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   5 drndreyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEks.dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglefr 99 
                    + ++ + LkP+n+++++ +++ +  rs+r LP ++++++ ++R+E s +++GL+Rvr F+q+d+++f++ +++++++++++   + ++  +g+ef 
    CCD22391.1 398 VE-KETFGLKPMNCPGHCLMFKSR-ERSYReLPWRVADFGVIHRNEFSgALSGLTRVRRFQQDDAHIFCTSDQIESEIENIFDFLKFVYGVFGFEF- 491
                   44.589****************99.9**888****************999*******************************************996. PP

                   EEEEEGTTSC.................................BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSS........ CS
                   xxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
  tRNA-synt_2b 100 aiielmsaks.................................adykdkkefeavsesltkgieigtiqklgtrlserlgatvldennr........ 155
                   +++++++ ++                                 a+y++k ++++ +  l++ ++++tiq + ++l++r++++++ ++++        
    CCD22391.1 492 KMELSTRPEKyvgeietwngaeaklesalkkwggnwevnpgdgAFYGPKIDIMISDA-LRRWHQCATIQLD-FQLPSRFELEFKSKDGKsedgkdle 586
                   57777776667888889999999******************************9999.*************.*********9998887622222333 PP

                   .EEEEEEEEEE.EE.HHHHHHHHHHH CS
                   .xxxxxxxxxx.xx.xxxxxxxxxxx RF
  tRNA-synt_2b 156 .eksvimicaa.ig.veRllsaileq 178
                    +++++mi++a +g veR+ ++++e+
    CCD22391.1 587 gYERPVMIHRAiLGsVERMTAILTEH 612
                   3479********9********99997 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.9   2.3e-24     1e-20       1      91 [.     625     716 ..     625     719 .. 0.90

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 2.3e-24
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEE....EEETTHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqe....rvsldelvekl 91 
                     qv+v+p++    ++++ya++++++L++ag+++++d  +++++kk+r+ ++l+++f+++vGe+e+++++v++r+rd +eq+    +v ++ ++e l
      CCD22391.1 625 QVLVVPVGV---KYQDYAQEVRDQLHNAGFYADVDLTGNTLQKKVRNGQMLKYNFIFIVGEQEMNEKSVNIRNRDIMEQQgknaTVVVSTVIEQL 716
                     8********...9****************************************************************996333366666666655 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   1.1e-18   4.8e-15       2      53 ..      65     117 ..      64     118 .. 0.96
   2 ?   -3.4   0.0       2.3     1e+04      13      40 ..     629     656 ..     625     672 .. 0.71

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 1.1e-18
                 EEEETTSSEEEEETTB-.HHHHHHHHSTTHHHHEEEEEECSEEEETTSBB-SS CS
         TGS   2 rvytPdGkvpdlprgat.veDfAykIhrslakkfiyAlVnGqrvgldhvLedg 53 
                 +++++dG v++ ++++t ++D+A+ I++sla+++++A+VnGq+++ld+++e +
  CCD22391.1  65 KIVLKDGAVKEATSWETtPMDIARGISKSLADNVCIAKVNGQLWDLDRPFEGD 117
                 799**********************************************9965 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.3
                 EETTB-HHHHHHHHSTTHHHHEEEEEEC CS
         TGS  13 lprgatveDfAykIhrslakkfiyAlVn 40 
                 +p g    D A+ +   l ++  yA V+
  CCD22391.1 629 VPVGVKYQDYAQEVRDQLHNAGFYADVD 656
                 5666667788999888888888888776 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   1.9e-16   8.5e-13       2      44 .]     247     295 ..     246     295 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 1.9e-16
                 EEEEETT.EEEEESS---SBGGGC-SEEEE.......CCECCCTCEEEEE CS
    tRNA_SAD   2 rvvsiGdisvelCgGtHvpnTgeIgafkil.......seesiakglrRIy 44 
                 +v+++G+  ++lC G+H+p+Tg I+afk+l        +e++++ l+R+y
  CCD22391.1 247 TVYRCGK-LIDLCVGPHIPHTGRIKAFKLLknsscyfLGEADNDSLQRVY 295
                 8*****8.*****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5120.03
//
Query:       CCD22392.1  [L=329]
Description: hypothetical protein NDAI_0A02340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-55  186.8   0.9    4.8e-55  186.0   0.9    1.4  1  DUF1689       Protein of unknown function (DUF1689)
  ------ inclusion threshold ------
      0.026   13.5   0.1      0.033   13.1   0.1    1.1  1  NiFeSe_Hases  Nickel-dependent hydrogenase


Domain annotation for each model (and alignments):
>> DUF1689  Protein of unknown function (DUF1689)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.0   0.9   5.4e-59   4.8e-55       1     145 [.      23     191 ..      23     192 .. 0.99

  Alignments for each domain:
  == domain 1  score: 186.0 bits;  conditional E-value: 5.4e-59
     DUF1689   1 ykaaveFYeaDqkLdaeDRleLakklqsiaraqllggwlgfsavflaptayrryktgaikgvkvprsfllGlvalvvssqlaakyaykkklkeld.... 95 
                 y+aa+ F+e+D+kLd+eDRl+L++k++ i r+ql++gwlgf+avf++p+ayr+y+tg +kg+kvpr+f+lGl+a+++s qla++ +yk +l+ ld    
  CCD22392.1  23 YDAAIAFHEKDEKLDREDRLDLYQKYKIIGRTQLFAGWLGFGAVFITPFAYRHYTTGVMKGIKVPRNFILGLIAMAFSGQLASNLMYKYQLNLLDyvpn 121
                 99************************************************************************************************* PP

     DUF1689  96 ....................eeeeksskqrqyevwkllknssaslwalYyykTaqnPerrlpdPreklqe 145
                                     ++e+k+++q+ ye+++llkn+sas+w  Y+y T+++P+r++pdP++k+q+
  CCD22392.1 122 vetsgdkygdnlqqnqeelvAQEHKTRDQKVYEMMTLLKNGSASRWRSYFYVTYHDPSRKFPDPKVKMQQ 191
                 ********************************************************************98 PP

>> NiFeSe_Hases  Nickel-dependent hydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   3.7e-06     0.033      43     208 ..      83     253 ..      75     272 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.7e-06
                   T----HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGTS-THGGG..GS-HHHHHHHHHHHSTSSB-SHHHHHHHHHHHHHHHHTT--GGGTT-TTT-T CS
  NiFeSe_Hases  43 gikipknarlirnliaaalllhdhivhFYhLhalDwvdvvsal..kadpkkaaelaqslskwpkssaeelkavqeklkkfvesgqlgifangYwghp 137
                   gik+p+n  l    +a + +l + +++ Y+L+ lD+v  v+    k+  +  ++ ++ +++ +k+ ++++ ++ + lk+  +s   + f   Y++ +
    CCD22392.1  83 GIKVPRNFILGLIAMAFSGQLASNLMYKYQLNLLDYVPNVETSgdKYGDNLQQNQEELVAQEHKTRDQKVYEMMTLLKNGSASRWRSYFYVTYHDPS 179
                   5777777666555667778899***************887766113433333344444558889999999999999999999999********8777 PP

                   T--S-HHHHHHHHHHHHHHHHHHH...HHTHHHHHHHSSSSS--.EBTTBESSGBGSBSHHHHHHHHHHHHHHH CS
  NiFeSe_Hases 138 ayklppeanliavahYLeaLelqr...kaakivaifggknPhpqslvvGGvtcaidllnaerlaevkslikevk 208
                   +   +p++++  ++++ + L+      +    + +++ + P  +     G+  +++  n+++ ++ ++ +++ +
    CCD22392.1 180 RKFPDPKVKMQQLKEFTNGLDSVSpfmHQRDPMGLYSKRFPKHKDKDPTGTVATLEQANPTNSNAQETQTRNSQ 253
                   77789999999999998888765511133456778888888666666555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1006  (0.0561102); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2391.89
//
Query:       CCD22393.1  [L=295]
Description: hypothetical protein NDAI_0A02350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-11   44.5   8.6    2.7e-11   43.4   8.6    1.5  1  Coatomer_E  Coatomer epsilon subunit
  ------ inclusion threshold ------
      0.012   15.4   2.0      0.085   12.7   0.2    2.9  3  TPR_1       Tetratricopeptide repeat
       0.26   11.5   1.4        7.4    6.9   0.1    3.4  4  TPR_2       Tetratricopeptide repeat
       0.33   11.5   4.7         18    5.9   0.0    3.7  4  TPR_19      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Coatomer_E  Coatomer epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   8.6     6e-15   2.7e-11       6     289 ..       4     292 ..       2     293 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 6e-15
                 HHHHHHHHTT-HHHHHHHHH.S---SHHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-HHHHHH.HHHHHHHH-STTHHHHHHHHHHHHHS----S-H CS
  Coatomer_E   6 fdvrnefYlGaYqkainead.vaslseeekeerdvylyrsylAlgsaqiviseIkesaatelqAv.rllaeylnspsrkeeilaelkeeladseiesne 102
                 f +++ +Y G Y +++ e++ +  +++e++     y  +s l l+++++  s++       l A   l+  +l+s     + +++l++ ++ ++ +  e
  CCD22393.1   4 FTIKQSYYAGDYPQVLKEIEgI--ENPENDDTLSFYKLKSQLVLNKYTEDESSL-------LGATfALYSDFLTS-----RDIKKLENSVSVETSGLYE 88 
                 99**************988844..456677777888888888888877655555.......55540445555555.....5688999999888887655 PP

                 ..HHHHHHHHHHHHTT-HHHHHHHHTT-...-SHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-H......HHHHHHHHHHHHH-TTHHHHHHHHH CS
  Coatomer_E 103 ..vlrllaaivflkegdfddalkllkks...enLeavAlkvqillklhrvdlAekelkkmqdidedat......ltQLAqawvklavggekiqdAyyif 190
                    l+ + ai+  +e++    +k +++    +n+e+  l vq+ l  ++  +A   l +    ++da+      +  LA+a++k  +  +     +y f
  CCD22393.1  89 lnLLACAQAILGDYEESLATCFKGIERDdsiGNVELILLAVQVALLNDQPSMASSALENYVSANQDAItsdvelIINLAEAYIKFYTTKDVASSNFYYF 187
                 1156666678888999999999999875336899*******************999998777766665222222679********************** PP

                 HHHHHHS---HHHHHHHHHHHHHTT-HHHHHHH...HHHHHHH-.....TT-.HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-HHHHHHHHHHH CS
  Coatomer_E 191 qelsekykstplllngkAvvslllgryeeAesl...LkeaLdkd.....akd.eetLiNlvvaaqhlgkdaevsernlsqlklshpehklvkdlnekea 280
                 +el++++ +t  +  g    +l++ + eeAe +   L++          a + e  L+N ++++   gkd   ++    +l +  p+h++vk  ++ +a
  CCD22393.1 188 EELAQTF-PTWKTQLGLLNSHLQQRNIEEAEDIvrlLESDFYCAqadicASYkEHLLANKITLSIMQGKD--NTNELRAELAKVNPKHTFVKSNDALNA 283
                 ******6.7999999****************86221443332222222234415578*************..5555667999***************** PP

                 HHHHHHHHH CS
  Coatomer_E 281 eFdrlvlqf 289
                 +F+ lv ++
  CCD22393.1 284 KFNDLVIKY 292
                 ***999876 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   1.9e-05     0.085       4      31 ..      89     116 ..      87     118 .. 0.93
   2 ?   -3.2   0.0         2   8.9e+03       6      13 ..     165     172 ..     164     172 .. 0.77
   3 ?    0.7   0.0      0.12   5.2e+02       9      22 ..     205     218 ..     205     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALeln 31 
                 l+ l+ a   lg+y+e l+ + k +e +
  CCD22393.1  89 LNLLACAQAILGDYEESLATCFKGIERD 116
                 799**********************988 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2
                 HHHHHHHH CS
       TPR_1   6 nlGnayfk 13 
                 nl+ ay k
  CCD22393.1 165 NLAEAYIK 172
                 89999965 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.12
                 HHHHHTT-HHHHHH CS
       TPR_1   9 nayfklgkydeAle 22 
                 n ++++ + +eA++
  CCD22393.1 205 NSHLQQRNIEEAED 218
                 6799********86 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.8   1.7e+04      12      18 ..      10      16 ..       9      20 .. 0.77
   2 ?    6.9   0.1    0.0017       7.4       4      22 ..      89     107 ..      87     114 .. 0.91
   3 ?   -2.1   0.0       1.3     6e+03       3      13 ..     162     172 ..     160     172 .. 0.75
   4 ?    1.3   0.0      0.11   4.9e+02       9      21 ..     205     217 ..     205     220 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.8
       TPR_2 12 yklgdye 18
                y++gdy 
  CCD22393.1 10 YYAGDYP 16
                7899996 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0017
       TPR_2   4 lynlGlayyklgdyeeAle 22 
                 l+ l++a + lgdyee l+
  CCD22393.1  89 LNLLACAQAILGDYEESLA 107
                 899*************985 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.3
       TPR_2   3 alynlGlayyk 13 
                 +  nl++ay+k
  CCD22393.1 162 LIINLAEAYIK 172
                 56799999975 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.11
       TPR_2   9 layyklgdyeeAl 21 
                 ++++++ + eeA+
  CCD22393.1 205 NSHLQQRNIEEAE 217
                 5899********7 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.9   8.5e+03       4      26 ..      12      32 ..      10      39 .. 0.74
   2 ?    3.3   0.2     0.027   1.2e+02      21      57 ..     118     154 ..      93     160 .. 0.83
   3 ?    4.2   0.4     0.014        62      11      37 ..     142     172 ..     132     173 .. 0.70
   4 ?    5.9   0.0    0.0041        18      26      49 ..     198     221 ..     185     232 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.9
      TPR_19  4 egdyaeAlalleqalqedpknae 26
                +gdy + l+  e +  e+p+n++
  CCD22393.1 12 AGDYPQVLKEIEGI--ENPENDD 32
                67887777777776..7888876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.027
      TPR_19  21 dpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 + +n e+ ll +++ l + q+  A  +L+ +  +++d
  CCD22393.1 118 SIGNVELILLAVQVALLNDQPSMASSALENYVSANQD 154
                 44699************************99999999 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.014
      TPR_19  11 lalleqalqedpk....naearllLAealla 37 
                  ++le+  +++ +    + e+ ++LAea+++
  CCD22393.1 142 SSALENYVSANQDaitsDVELIINLAEAYIK 172
                 455555555555566679***********97 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0041
      TPR_19  26 earllLAeallalgqldeAealLd 49 
                   +l+L + +l++ +++eAe+++ 
  CCD22393.1 198 KTQLGLLNSHLQQRNIEEAEDIVR 221
                 567999999************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2069.36
//
Query:       CCD22394.1  [L=469]
Description: hypothetical protein NDAI_0A02360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-54  182.6   0.0    1.1e-53  181.3   0.0    1.7  2  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
      5e-38  129.8   0.1    6.5e-38  129.4   0.1    1.1  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    2.4e-05   24.5   0.1    5.3e-05   23.3   0.1    1.5  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
    3.9e-05   23.9   0.4    0.00012   22.3   0.4    1.8  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
     0.0046   17.5   0.1      0.019   15.5   0.1    2.0  2  XdhC_C         XdhC Rossmann domain
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.046   13.5   0.0    2.0  2  ACT            ACT domain
      0.023   14.2   0.4      0.069   12.7   0.1    1.9  2  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
      0.065   13.1   0.2       0.23   11.3   0.2    1.9  1  Rossmann-like  Rossmann-like domain


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.98   2.2e+03      26      26 ..     109     109 ..      66     158 .. 0.55
   2 !  181.3   0.0   4.8e-57   1.1e-53       2     178 .]     165     349 ..     164     349 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.98
                   T CS
  2-Hacid_dh_C  26 e 26 
                   +
    CCD22394.1 109 K 109
                   2 PP

  == domain 2  score: 181.3 bits;  conditional E-value: 4.8e-57
                   HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE- CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslh 98 
                   a +++l+r+l + + e+++g+w ++ + +  e++gkt+GiiG+G+IG+++  +++a+gm+vi+yd           +  ++ +l+ell++sD+vslh
    CCD22394.1 165 AEIISLARQLGDRSIELHTGTW-NKVSARCWEIRGKTLGIIGYGHIGSQLSVLAEAMGMHVIYYDIVTIMAL---GTAKQVSTLDELLNKSDFVSLH 257
                   6799******************.99999***************************************77444...3333778*************** PP

                   S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTC............HHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  99 lpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplped............spllelpnviltPHia 178
                   +p t et+++++  ++a+mk+ga++iN++RG++vd  aL++a+++gkiagaalDv+ +ep ++             s+l++lpnviltPHi+
    CCD22394.1 258 VPETSETKNMLSFPQFAAMKDGAYVINASRGTVVDIPALVQAMQAGKIAGAALDVYPNEPGKNGantynddlnswtSQLVSLPNVILTPHIG 349
                   ***********************************************************88876777777787777899***********98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.4   0.1   2.9e-41   6.5e-38       1     134 []      61     381 ..      61     381 .. 0.99

  Alignments for each domain:
  == domain 1  score: 129.4 bits;  conditional E-value: 2.9e-41
                 EEEEST.CHHHHHHHHHTTEEEEEES.CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   1 vlileplreeelellkeegvevevkd.ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesv 98 
                 +l+le++++++++++ke+g++v++++ +l++e+l+ek+kd++a+ +rs+tk+ta+vl+++ +L vi+++++G+++vDld+a++ G++V+n p ++++sv
  CCD22394.1  61 ILLLENVNTAAIQIFKEQGYQVDFYKsSLPEEDLIEKIKDVHAIGIRSKTKLTANVLQHARNLVVIGCFCIGTNQVDLDYAANMGVAVFNSPFSNSRSV 159
                 7999*************999******999999******************************************************************* PP

                 HHHH............................................................................................... CS
                 xxxx............................................................................................... RF
  2-Hacid_dh  99 AElt............................................................................................... 102
                 AEl+                                                                                               
  CCD22394.1 160 AELViaeiislarqlgdrsielhtgtwnkvsarcweirgktlgiigyghigsqlsvlaeamgmhviyydivtimalgtakqvstldellnksdfvslhv 258
                 *************************************************************************************************** PP

                 ...........................................................................................T-BHHHHH CS
                 ...........................................................................................xxxxxxxx RF
  2-Hacid_dh 103 ...........................................................................................aaTeeaqe 110
                                                                                                            ++Teeaq+
  CCD22394.1 259 petsetknmlsfpqfaamkdgayvinasrgtvvdipalvqamqagkiagaaldvypnepgkngantynddlnswtsqlvslpnviltphigGSTEEAQS 357
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHTTCCGTTBCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 111 niaeeaaenlvaflkgespanavn 134
                 +i+ e+a +l ++++++++   vn
  CCD22394.1 358 AIGIEVAHSLSKYINEGNSVGSVN 381
                 ***************999888776 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   2.4e-08   5.3e-05      21     111 ..     196     287 ..     190     315 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.4e-08
                    -TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEE...E.E-SSSSSSB-HHHHCCS-TTEEEEE-SS CS
  AdoHcyase_NAD  21 laGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadiv...v.tttGnkdiitlehlkkmkddaivcniGh 111
                    + Gk+  ++GyG +G   +   +++G +vi  ++  i al +a    +v tl+e+++k+d+v   v  t+ +k++++  ++++mkd a v n   
     CCD22394.1 196 IRGKTLGIIGYGHIGSQLSVLAEAMGMHVIYYDIVTIMALGTAK---QVSTLDELLNKSDFVslhVpETSETKNMLSFPQFAAMKDGAYVINASR 287
                    789**********************************9999875...89999*99999998633342466789*****************99754 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.4   5.2e-08   0.00012       2     105 ..     201     301 ..     200     311 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 5.2e-08
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.akaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspe 95 
                    +g+iG G +Gs++    ++ g++v+ y+       +++a g ak ++++ el+++ d+v + v+++++++++++   ++a+k g+++i+ s   + 
     CCD22394.1 201 LGIIGYGHIGSQLSVLAEAMGMHVIYYDIV-----TIMALGtAKQVSTLDELLNKSDFVSLHVPETSETKNMLSFpQFAAMKDGAYVINASRGTVV 291
                    79**************************76.....44444448999**************************9988999*********99987776 PP

                    HHHHHHHHHH CS
  NAD_binding_2  96 dtrelakelk 105
                    d   l ++++
     CCD22394.1 292 DIPALVQAMQ 301
                    6666666555 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.5   3.3e+03      12      57 ..      70     139 ..      64     147 .. 0.47
   2 !   15.5   0.1   8.5e-06     0.019       2      66 ..     202     301 ..     201     309 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.5
                 HHHHHHHHHTEEEEEEES-G.GGG-GGG-TT-SE.......................-EEEE--S-HHHH CS
      XdhC_C  12 alarlaaalgfrvtvvdpre.efatkerfpeade.......................tavvvlthdhklD 57 
                 a +++ ++ g++v  +++   e    e+++++++                        ++++ t++ +lD
  CCD22394.1  70 AAIQIFKEQGYQVDFYKSSLpEEDLIEKIKDVHAigirsktkltanvlqharnlvviGCFCIGTNQVDLD 139
                 5566666666666666555423232333332222333333333333333344455555555555555555 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 8.5e-06
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG...................-GGG-TT-SE........................-EEEE--S-HHHH CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa...................tkerfpeade........................tavvvlthdhklD 57 
                  i+G gh++ +l  la+a+g++v+ +d  + +a                            +                        ++v+ ++++   D
  CCD22394.1 202 GIIGYGHIGSQLSVLAEAMGMHVIYYDIVTIMAlgtakqvstldellnksdfV--------SlhvpetsetknmlsfpqfaamkdgAYVINASRGTVVD 292
                 69***************************976778666666666666555551........044455555666777777777999999*********** PP

                 HHHHHHHSS CS
      XdhC_C  58 aealeaalr 66 
                  +al +a++
  CCD22394.1 293 IPALVQAMQ 301
                 ******994 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.6     1e+04      43      64 ..     229     250 ..     226     250 .. 0.79
   2 ?   13.5   0.0     2e-05     0.046       6      64 ..     403     458 ..     398     460 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.6
                 EEEEEEEEEHHHHHHHHHHHHT CS
         ACT  43 ivfvvivvdeedleevlealkk 64 
                 iv+++ ++ +++++++ e l+k
  CCD22394.1 229 IVTIMALGTAKQVSTLDELLNK 250
                 7888888889999998888876 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2e-05
                 EEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHT CS
         ACT   6 gvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkk 64 
                   +++PG+L  v ++l+ ++i   +  +  +      ++  +  v+++d++++ ++l++
  CCD22394.1 403 IHRNVPGVLKTVNNILSSHNIEKQFSDSNGDIA---YLIADISQVNQSDIKNIYDELNQ 458
                 678******************999988888875...78888888888888888888876 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.86   1.9e+03       5      50 ..      99     147 ..      94     166 .. 0.64
   2 ?   12.7   0.1   3.1e-05     0.069       2      75 ..     196     265 ..     195     328 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.86
                 S-EEEES-SHHHHHHHHHHHHTT--EEEEE-...TT-HHHHHHHHTT-E CS
        IlvN   5 kkiaviGyGsqGhaqalnlrdsgldvvvglr...egsksvkkAkeegfe 50 
                 k +  iG  s+ +  a+ l+ +   vv+g     +++  ++ A + g+ 
  CCD22394.1  99 KDVHAIGIRSKTKLTANVLQHARNLVVIGCFcigTNQVDLDYAANMGVA 147
                 6677788888888888888888777777753111223344455555555 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.1e-05
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHHHH CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPDelqke 75 
                 ++gk++ +iGyG  G   +      g++v++    +      A  ++ +v t++e+ +k+d+v + +P++ +++
  CCD22394.1 196 IRGKTLGIIGYGHIGSQLSVLAEAMGMHVIYYDIVT----IMALGTAKQVSTLDELLNKSDFVSLHVPETSETK 265
                 789*************999999999****9865544....467777779*******************987543 PP

>> Rossmann-like  Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2    0.0001      0.23      13     113 ..     201     295 ..     195     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
  Rossmann-like  13 vGiisaGrvGtalgaaleraghvvvgisaisaasreraerrlPdvpvlevedvaaraellllavPdaelpglvkglaatgavraGtivahtsganG 108
                    +Gii+ G++G+ l++  e  g +v+    ++  +   a++      v +++++ ++++++ l vP++  ++ +  + +  a+++G  v+ +s    
     CCD22394.1 201 LGIIGYGHIGSQLSVLAEAMGMHVIYYDIVTIMALGTAKQ------VSTLDELLNKSDFVSLHVPETSETKNMLSFPQFAAMKDGAYVINASRGTV 290
                    7*************99999998888777777776666664......567889999***********99999999999999*********9998888 PP

  Rossmann-like 109 veila 113
                    v+i a
     CCD22394.1 291 VDIPA 295
                    88754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3455.42
//
Query:       CCD22395.1  [L=1005]
Description: hypothetical protein NDAI_0A02370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-69  234.4  15.6    2.2e-68  230.7   6.2    2.9  3  SPO22     Meiosis protein SPO22/ZIP4 like
     0.0075   15.8   0.2      0.043   13.4   0.2    2.5  1  DUF3452   Domain of unknown function (DUF3452)
  ------ inclusion threshold ------
       0.08   13.2   0.3         42    4.7   0.1    4.3  3  TPR_8     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SPO22  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.7   6.2   3.7e-72   2.2e-68       1     275 [.     213     502 ..     213     503 .. 0.97
   2 !    9.4   0.4   0.00011      0.65      83     193 ..     513     616 ..     505     658 .. 0.76
   3 ?   -3.9   0.1       1.2   7.3e+03      84     129 ..     813     855 ..     798     876 .. 0.63

  Alignments for each domain:
  == domain 1  score: 230.7 bits;  conditional E-value: 3.7e-72
       SPO22   1 lAwkegdldlAehmlskakceenllrldpeeaeeLarllyniGksll....skkkyeeav........kWLqraldilekqesesksssdlselrlsvl 87 
                 lA+k+g+l++A++++sk + +e +++ld+e++ eL+r++yn+++sl      +k++ee++        ++L+ a+++le +  ++k ++d+++l++s+l
  CCD22395.1 213 LALKDGNLETAKIYESKFNNQEVIEHLDAETVMELSRIIYNATISLNdhmnVNKNKEESSndckneiiYFLKLAHSYLEMPLPALKLQTDYNNLKFSIL 311
                 69*********************************************999966666666679999999*****************999*********** PP

       SPO22  88 rllarayle..ldqeesyekalkavellqkeygkkehpsllllklkillkreadeeeieealeemidsvelseanfklilslikrlaeksaalavrvld 184
                  +la+ ++e   ++ ++  + +k++e+lq+e+++k++++ll+++l++++ +  ++e+iee++++mi+sv+ + +nf+++++ ik+++++s++l++ +ld
  CCD22395.1 312 LFLANILIEvnEENLNYVSESEKYLEMLQNEFPRKIESFLLAIQLQKKKPGPSNSEQIEEIIMRMIMSVS-IITNFDAVVGSIKDFCSRSSRLGILCLD 409
                 *********777777899***************************************************7.**************************** PP

       SPO22 185 ylldrklsfersedvvekllvalfflltqskkeed..aiealedilaalehslgkqlskeaasalhtLLWnkgekhykaknydeAaewyelsl 275
                 y++++k++++ +++++ekl++++ffl+tqs+++++  +ie+le +++ale++l ++lsk ++s+++tLLWn+g+k++k++ny+ A+++y+lsl
  CCD22395.1 410 YIVMNKIDVKTEQNWLEKLILLRFFLTTQSNTLNSqeIIESLEPFCNALERILVNNLSKPTLSSIITLLWNSGKKQEKQENYELAIKFYRLSL 502
                 *****************************99999999*******************************************************9 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00011
       SPO22  83 rlsvlrllarayleldqeesyekalkavellqkeygkkehpsllllklkillkreadeeeieealeemidsvelseanfklilslikrlaeksaalavr 181
                 + ++ r+l  ay+++++ +  e+  + +e+++ke++     +ll+lk+ ++  r++ e+++ + l+++   ++ +e+++++++  ++++ ++s++la+r
  CCD22395.1 513 KGKIQRALQGAYINIEDFAIVEQIYEEMEIAEKEFP---LTQLLILKVYLK--RDNIESAF-QCLKKIQ--ISDHENSMDALILGVSEC-KRSTDLAIR 602
                 78999********98888888888888888899999...888888888865..55544444.3444443..3479**************.77******* PP

       SPO22 182 vldylld..rklsf 193
                 ++  +++  + ++f
  CCD22395.1 603 AISLIFEklNNKEF 616
                 **999994433333 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 1.2
       SPO22  84 lsvlrllarayleldqeesyekalkavellqkeygkkehpsllllk 129
                 l  l+l     l   +  + +k l++v+ +q+ + ++++ +l+ + 
  CCD22395.1 813 LDSLQLSYEIAL---CTRDRQKILEIVNKAQSINNSEIDTALFNIT 855
                 555555555555...6777788888888887655555555555444 PP

>> DUF3452  Domain of unknown function (DUF3452)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.2   7.3e-06     0.043      17      70 ..       7     110 ..       1     155 [. 0.70

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.3e-06
     DUF3452  17 scklsikqFfkklkkw.admanldeelrqeieelernfsvttvifkkYrqiFee............................................. 69 
                  +k+ i++F +  + + ++++n++++ ++e++ l++++ v+  i ++Y+++F++                                             
  CCD22395.1   7 TFKTTINEFCDAANWLtSQLYNSKNSTEKELSPLTNKIDVLCPIAERYERTFRTsevlldeelilklensasslwnsstiairtenndekkllfchckf 105
                 5677777777766544899*********************************98887777777666666666655555555555555555555555555 PP

     DUF3452  70 ....l 70 
                     l
  CCD22395.1 106 fatiL 110
                 55543 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.007        42      12      28 ..     486     502 ..     476     504 .. 0.79
   2 ?    3.0   0.0     0.025   1.5e+02       6      26 ..     553     573 ..     550     575 .. 0.90
   3 ?   -2.4   0.0       1.3     8e+03      13      31 ..     952     970 ..     941     971 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.007
                 HHTT-HHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekal 28 
                 +k+++ye A+++y+  l
  CCD22395.1 486 EKQENYELAIKFYRLSL 502
                 68899999999999776 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.025
                 HHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyek 26 
                 ++ ++ylk  ++e+A ++++k
  CCD22395.1 553 LILKVYLKRDNIESAFQCLKK 573
                 78899**************99 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.3
                 HTT-HHHHHHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyekaleld 31 
                  ++d+++ +++++  ++++
  CCD22395.1 952 IKEDKKNGVAWCRTSIKWA 970
                 6889999******999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1005 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1072  (0.0597914); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 6697.14
//
Query:       CCD22396.1  [L=288]
Description: hypothetical protein NDAI_0A02380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.077   13.2   4.1        0.2   11.9   4.1    1.6  1  DUF4611   Domain of unknown function (DUF4611)


Domain annotation for each model (and alignments):
>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.1   1.1e-05       0.2      41      82 ..     173     214 ..     169     217 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.1e-05
     DUF4611  41 evsellstlveqeaqddvaaagdeeeegededdeeeeknikn 82 
                 ++s+l+++l +++++++  ++++e+  ++d+dd+++ ++i n
  CCD22396.1 173 SISDLFNDLNSENQEGEILENENESYADDDDDDNDAHSSIPN 214
                 79*********************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2050.78
//
Query:       CCD22397.1  [L=606]
Description: hypothetical protein NDAI_0A02390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-59  198.7   1.0    1.6e-58  197.8   1.0    1.5  1  HORMA     HORMA domain
  ------ inclusion threshold ------
       0.13   11.8   5.0       0.35   10.5   5.0    1.7  1  PHD_2     PHD-finger


Domain annotation for each model (and alignments):
>> HORMA  HORMA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8   1.0   1.7e-62   1.6e-58       1     212 []      24     236 ..      24     236 .. 0.92

  Alignments for each domain:
  == domain 1  score: 197.8 bits;  conditional E-value: 1.7e-62
       HORMA   1 SlelvkellaasissilylRglfpedaFedrkl.................sglklkiLlrgsseeadrlldwLekGvfdaLekkyLealiltIykdkde 82 
                 S++l++++l++s+++ ++lRglfp++ F d+++                 + +k+k+L+rg+s+++d lldwLekGvf+ ++ kyL al+++I+ d+++
  CCD22397.1  24 SQKLIQTMLTMSFGCFAFLRGLFPDETFVDQRFvpekvernynkqttpqnNSIKIKTLVRGKSKTVDLLLDWLEKGVFQSIKLKYLNALSVGIFLDENN 122
                 99***********************************************9679********************************************** PP

       HORMA  83 penvlEsYtFsfkytksggkedvssskletkkknleslsldekeeekkktekevkkelealirrlitltqsLpplpekryltmkLlytddtPedyePpg 181
                 p++++E+YtFsf+y ++++                  ++l  + +e++++  + +k++++l+rr+i++tqsL+plp+k++++m+Ll++d+t ++y+Pp 
  CCD22397.1 123 PTDLVENYTFSFHYDQENN------------------VKLRINGSEDTVSLLDSRKMAQQLMRRFIIITQSLEPLPQKKFISMRLLFNDNTDPKYQPPL 203
                 **************65222..................233334678899************************************************** PP

       HORMA 182 Fkaaaeee..dstrkeneepekvsvGkvdtghh 212
                 Fk+a+       +  ++ ++e++svG++dt+hh
  CCD22397.1 204 FKDATFCRraTLKIPNTIDQESFSVGTLDTSHH 236
                 *******954444445557899**********9 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.0   3.9e-05      0.35       6      28 ..     333     355 ..     329     361 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.9e-05
       PHD_2   6 sCdkCsvaVHasCYGvskesdge 28 
                 +C+ C+ +VH  CYG s+++  +
  CCD22397.1 333 VCKICKKSVHGVCYGNSPHPRID 355
                 7**************99998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       955  (0.0532657); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4468.39
//
Query:       CCD22398.1  [L=437]
Description: hypothetical protein NDAI_0A02400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0047   17.4   0.1     0.0047   17.4   0.1    2.7  3  PCI       PCI domain


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       0.1   1.8e+03      41      65 ..     143     171 ..      99     177 .. 0.65
   2 !   17.4   0.1   2.6e-07    0.0047       4      95 ..     253     345 ..     250     353 .. 0.90
   3 ?   -0.9   0.1      0.14   2.4e+03      13      41 ..     355     381 ..     347     399 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHH....CESEEEHHH CS
         PCI  41 sLekkvrerllrqvsk....iyssisler 65 
                 +  ++++ + + ++ k     y++i+l +
  CCD22398.1 143 YRMDNIYVNQIHETLKeeldAYQRIQLLS 171
                 33455666666666666666888888765 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 2.6e-07
                 HHHHHHHHHTSHHHHHHHHHHH.HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEE CS
         PCI   4 sdllkalrsgnlsgfseelkdl.eeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakid 95 
                 +++l+ l + ++ +f e++ ++  +++ + ++l++ +   +  +r + +  + +i + i+++ l+k+l+++ + v + l+ lI++ +++ kid
  CCD22398.1 253 IECLQLLIDTKFGKFFEIWHEVvGSKYQESPFLNKGWVAAKLMMRSKIYFFYLRISNYIHISYLSKTLGIDINAVREELSLLIESAHLNFKID 345
                 677888888888888888888888888999999999999999999999988888**************************************9 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.14
                 TSHHHHHHHHHHHHHHHHHHTTHHHHHHH CS
         PCI  13 gnlsgfseelkdleeelladdglaqlles 41 
                   l+++ + l+++  ++l+d++l++  ++
  CCD22398.1 355 HYLEDPVQKLREN--QVLIDKELEHRKSQ 381
                 3488899999999..67777777664433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3461.03
//
Query:       CCD22399.1  [L=272]
Description: hypothetical protein NDAI_0A02410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-61  208.5   8.6    1.3e-61  208.2   8.6    1.0  1  MAM33     Mitochondrial glycoprotein
  ------ inclusion threshold ------
      0.045   13.9   0.9        2.5    8.3   0.2    2.6  2  DUF3567   Protein of unknown function (DUF3567)
       0.15   12.4   1.7       0.71   10.2   0.4    2.3  2  DUF1400   Alpha/beta hydrolase of unknown function (DUF1400)


Domain annotation for each model (and alignments):
>> MAM33  Mitochondrial glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.2   8.6   2.2e-65   1.3e-61       2     212 .]      59     270 ..      58     270 .. 0.92

  Alignments for each domain:
  == domain 1  score: 208.2 bits;  conditional E-value: 2.2e-65
       MAM33   2 esEikyekeavkeeeeepesvkeflenggFeiedkpgkeevtLtrkf.gdekIrvtfsvadlaneeeeeeeeeeeeedeaeeeeeeeeeeeee..eees 97 
                 +sE+k+eke  +  + +++ +k+fle++gF++ ++pgk+e+++++k  ++e+++v f+va++an ++++   e+ +++ +e +ee ++ eee+  +  +
  CCD22399.1  59 KSELKIEKEGLS--DLSESPFKKFLEDSGFNVVETPGKNEAQIVKKSeDGETVHVNFDVAQVANLPYDSALAENLKDEVNEVNEEPTDPEEEDfdSLGD 155
                 89*******855..457899**************************9789*******************9888877777764555444444447899** PP

       MAM33  98 fpvrlsvtiekpgksggaLelectaqdgefvidnvsyykdaelakeetaeadwkrrllyeGPpFenLDedLqellerYLeerGIdeelaefipdysevk 196
                 ++++++v+i+k+++s+ ++el ++ q+g+f++d+v+++k++++a +e+aea+ +r+l+y+GPpF+nLDe+Lqe+le+YLe+rGI+eela+fi +yse+k
  CCD22399.1 156 NFANVNVVITKSDDSALSFELLLNLQEGSFYVDSVTPFKSSKQALDESAEAEISRELVYHGPPFSNLDEELQESLESYLESRGITEELAAFIGSYSEFK 254
                 ************999999999999*************************************************************************** PP

       MAM33 197 EqkeYvrWLenvkkFv 212
                 E++eYv+WLen+ +F+
  CCD22399.1 255 ENNEYVSWLENMDTFF 270
                 **************96 PP

>> DUF3567  Protein of unknown function (DUF3567)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2   0.00043       2.5      46      81 ..     123     160 ..      80     164 .. 0.77
   2 ?    3.5   0.0     0.013        78      50      84 ..     222     256 ..     207     260 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00043
     DUF3567  46 ldGslAesfrkevkaliee..epseeevddfldeyaal 81 
                  d +lAe+++ ev+++ ee  +p+ee++d + d++a++
  CCD22399.1 123 YDSALAENLKDEVNEVNEEptDPEEEDFDSLGDNFANV 160
                 5889************99766899999**999999876 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.013
     DUF3567  50 lAesfrkevkalieeepseeevddfldeyaalaqq 84 
                 l e+++++++++ e+   +ee+ +f+++y+++ ++
  CCD22399.1 222 LDEELQESLESYLESRGITEELAAFIGSYSEFKEN 256
                 5689999**********************998765 PP

>> DUF1400  Alpha/beta hydrolase of unknown function (DUF1400)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.4   0.00012      0.71      16      93 ..      22      97 ..      14     104 .. 0.76
   2 ?    0.7   0.0       0.1   6.2e+02      19      40 ..     228     249 ..     219     265 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00012
     DUF1400 16 isvedLekfaktgevsseLatylkllskeqreelreaLqaeiklspvllsqllnspigeklLerlgeviqtesdqngk 93
                i  ++L++ a t    +++ +  kl+ ++q++++ e  + e+k++++ ls l +sp+ ++l ++  +v++t+ + n++
  CCD22399.1 22 ILSQSLKRVAATSPSMRSFVST-KLIFNQQKQNVLESIKSELKIEKEGLSDLSESPFKKFLEDSGFNVVETPGK-NEA 97
                5556677777776666666554.459999***************************999888888888888744.434 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.1
     DUF1400  19 edLekfaktgevsseLatylkl 40 
                 e+Le++ ++  +++eLa+++  
  CCD22399.1 228 ESLESYLESRGITEELAAFIGS 249
                 6899999999999999988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2028.67
//
Query:       CCD22400.1  [L=135]
Description: hypothetical protein NDAI_0A02420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-35  119.7   0.1      6e-35  119.0   0.1    1.4  1  Ribosomal_S24e  Ribosomal protein S24e


Domain annotation for each model (and alignments):
>> Ribosomal_S24e  Ribosomal protein S24e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.1   3.3e-39     6e-35       1      79 []      24     102 ..      24     102 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 3.3e-39
                     EEEEE-SSS-S--HHHHHHHHHHHHTS-CTTEEEEEEEE-SSSSEEEEEEEEES-HHHHHHHS-HHHHHHTTSS---S- CS
  Ribosomal_S24e   1 vvdvlHpgkatpskteireklakmykvdpdlvvvfgfrthfGggkttGfakiYdsleaakkfEpkhrlaRnglaekkkk 79 
                     vvdvlHp++a++sk+e+rekla+ yk+++d v vfgfrt+fGg k+tGf+++Y+s+++akkfEp +rl+R glaek +k
      CCD22400.1  24 VVDVLHPNRANVSKDELREKLAQVYKAEKDAVSVFGFRTQFGGSKSTGFGLVYNSVADAKKFEPTYRLVRYGLAEKVEK 102
                     79**************************************************************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1067.28
//
Query:       CCD22401.1  [L=672]
Description: hypothetical protein NDAI_0A02430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-08   32.4   0.1    1.3e-07   31.7   0.1    1.3  1  LCCL      LCCL domain


Domain annotation for each model (and alignments):
>> LCCL  LCCL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1     7e-12   1.3e-07      12      79 ..     175     272 ..     154     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 7e-12
                 ......SSEEEEEE-S---SSS....--EESSS.........................SEETTSBHHHHHHHHTSS.-TT-EEEEEEEE--B-S---E CS
        LCCL  12 klrkkkgekfavrCpanCkdek....asvvGsk.........................vYssdSsICkAAihaGvi.dnkgglvvvtiveelkeykgs 79 
                 ++ ++++ ++ +rCpa C+       a+ vG+k                          Y++dS+ C+AA+haG+i    gg+  +++ +++ ++ + 
  CCD22401.1 175 ACGPFDNREYMIRCPAFCDRGGwtysAIAVGNKrikytgykigggplghsedhnklsyPYRADSFPCAAAVHAGLIsPVVGGCARLSKDGRQYRFPSR 272
                 7899**************655556779999**********************************************65689***********999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4720.81
//
Query:       CCD22402.1  [L=852]
Description: hypothetical protein NDAI_0A02440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-182  608.3   0.0   1.4e-182  607.9   0.0    1.1  1  Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
    1.7e-23   82.4   0.0    4.3e-23   81.1   0.0    1.8  1  Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
    1.4e-17   64.0   0.0      4e-17   62.6   0.0    1.8  1  ATP-cone         ATP cone domain


Domain annotation for each model (and alignments):
>> Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  607.9   0.0  2.3e-186  1.4e-182       1     524 []     216     742 ..     216     742 .. 0.97

  Alignments for each domain:
  == domain 1  score: 607.9 bits;  conditional E-value: 2.3e-186
                      EEE......BSS-EEEE-X..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX CS
                      xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC   1 ssCfvlsv.edslesIletvkeaallskaggGvGlnlsklRakgslvkgtegaasGpvsfmklidavadvvkqgG.kRrGAamvylevwHpDie 92 
                      ssCf+l + eds+++I+et+ke+a++sk++gG+Gl+++++Ra+gs+++gt+g+++G+++++++++++a++v+qgG kR+GA ++yle+wH+Di+
       CCD22402.1 216 SSCFLLAMkEDSIDGIFETLKECAMISKTAGGIGLHIHNVRATGSYIAGTNGTSNGLIPMVRVFNNTARYVDQGGnKRPGAFALYLEPWHADIF 309
                      8*******9************************************************************************************* PP

                      XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........................XXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC  93 kfidaKekntgeeenrlsnlnisvgvpdlFmeavkedkdwtLfsPrtvvkleklygeefeeeyeeleekakikkkevkakeLfeeiaesawetg 186
                      +fi+++ kn+g+ee r+++l+ ++++pdlFm++v+e+++wtLfsP++++ l ++yg+ef e ye++e++  ++ k++ka++L+ +i+e++ etg
       CCD22402.1 310 DFIEIR-KNHGKEEIRARDLFPALWIPDLFMKRVEENGQWTLFSPSDAPGLDDVYGNEFVELYERYERE-GLG-KTIKAQKLWYAILEAQTETG 400
                      ******.**************************************************************.444.59****************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 187 ePgvlfkDtiNrrnvlekakggkIratNlCgEiplleyes.vavCnLasinLakfvkkdeegk.kefdwdelkkviqlvvraLdnvidvnkypl 278
                      +P++++kD++N++ ++  ++ g I+++NlC+Ei+  ++++ +avCnLas+ L++f+++ e+gk  ++++++l++  ++v+ +L+ vid n+yp+
       CCD22402.1 401 TPFIIYKDACNEKTNQ--KNLGVIKSSNLCCEIVEWSSPDeTAVCNLASVALPAFIETSEDGKtSTYNFEKLHEISKVVTYNLNRVIDNNYYPV 492
                      ****************..999*****************9999**************98888762578*************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx RF
  Ribonuc_red_lgC 279 peiekntkktRriGlGvmgladalaklgipydseealkfarkitelltyyaykaSvelAkergpfplfekskyskgilpvdefeeke..kedwe 370
                      pe+e+++ ++R+i lGv+glad+++ l++p++se a  ++++i+e++++++++aS+elA++ gp+++f++s++s+gil++d+++++    +dwe
       CCD22402.1 493 PEAERSNVRHRPIALGVQGLADTYMLLRLPFESEGASLLNKQIFETMYHASLEASCELAQKDGPYETFQGSPASEGILQMDMWDQEPlgMWDWE 586
                      ***********************************************************************************4433669**** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 371 eLreeikkyGlrnamvtalaPTgsiSliagtssgiePifalvykksvtvgeflevnpvfeeeLkklglwseellkki...lesvqgleeipeei 461
                      +Lr++i kyGlrn+ ++a +PT+s+S+i g ++++eP+++++y+++v +gef +vnp+++++L +lg+w+e ++++i    +s+q+l+++p e+
       CCD22402.1 587 TLRKDIVKYGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQHIiteNGSIQNLPNVPAEL 680
                      *****************************************************************************866666*********** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 462 krvfktaldidqedhikaqaaiqkwidqsiSktinlpneatvedvkelyllAwklGlKgvtyY 524
                      k+++kt+++i+q+++i+++a++  +idqs S++++l    t+ +++++++++wk+GlK+ +yY
       CCD22402.1 681 KALYKTVWEISQKKIIDMAADRSIYIDQSHSLNLFL-RAPTMGKLTSMHFYGWKKGLKTGMYY 742
                      ************************************.9************************9 PP

>> Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   7.1e-27   4.3e-23       2      82 ..     142     212 ..     141     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 7.1e-27
  Ribonuc_red_lgN   2 kltynalkvledrYllkdengeivEspqqmfmRvAlalaiaealydkleedkdlaeefydlmssqkflpasPtlmnaGtel 82 
                      +++y+++k+le++Yllk + g+++E+pq+++mRvAl++++         +d++ + ++y+lms ++f++asPtl+naGt++
       CCD22402.1 142 SFNYFGFKTLERSYLLKLD-GKVAERPQHLIMRVALGIHL---------DDMESVLKTYNLMSMRYFIHASPTLFNAGTPR 212
                      699*************999.99******************.........******************************97 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   6.7e-21     4e-17       1      86 []       1      89 [.       1      89 [. 0.98

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 6.7e-21
                -EEE-TTS-EEE--HHHHHHHHHHHHHH.-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHH....HSS-HHHHHHHHHHHHHHHH CS
    ATP-cone  1 ikViKRdGtvepfdvekIkraiekAceg.seeeideiaeeveaevrkrlrdgisteeIqdlvektli....ehpdyavaaayilyrnlrke 86
                ++ViKRdG++ep+  +kI+++i++ c g +++++d++  +v +++ ++ ++g++t e+++l ++t++     hpdya++aa++  +nl+k+
  CCD22402.1  1 MFVIKRDGRKEPVQFDKITARISRLCYGlDPNRVDAV--KVTQRIISGVYSGVTTVELDNLAAETCAymttVHPDYATLAARLAISNLHKQ 89
                89**************************999999999..**************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 6116.43
//
Query:       CCD22403.1  [L=154]
Description: hypothetical protein NDAI_0A02450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-24   85.3   0.4    4.3e-24   84.3   0.4    1.5  1  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
    6.1e-16   57.8   0.2    1.1e-15   57.0   0.2    1.4  1  Fis1_TPR_N  Fis1 N-terminal tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   16.1   0.0      0.031   14.8   0.0    1.8  1  TPR_19      Tetratricopeptide repeat
       0.02   14.9   0.1      0.025   14.6   0.1    1.3  1  ETRAMP      Malarial early transcribed membrane protein (ETRA
       0.14   12.3   0.1       0.31   11.2   0.0    1.7  2  TPR_2       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.4   1.2e-27   4.3e-24       1      53 []      77     129 ..      77     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 1.2e-27
                 HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTT CS
  Fis1_TPR_C   1 reclYylAlGhyklgeYseArryvdalLeiEPenrQaqsLkeliedkikkegl 53 
                 reclYyl++G+yk geY++A+ryvd+l e+EP+n+Q+++L  ++edki+ke l
  CCD22403.1  77 RECLYYLTVGCYKSGEYTMAKRYVDTLYEHEPNNKQVKTLMDMVEDKIQKESL 129
                 9*************************************************976 PP

>> Fis1_TPR_N  Fis1 N-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.2     3e-19   1.1e-15       1      32 [.      40      71 ..      40      72 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 3e-19
  Fis1_TPR_N  1 qtkFnYAWgLvkSknredqqeGiaLLeelyrd 32
                q++FnYAWgL+kS + +dq++G++LL+++y++
  CCD22403.1 40 QSRFNYAWGLIKSQDINDQRLGVKLLTDIYKQ 71
                9*****************************98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   8.6e-06     0.031      12      65 ..      63     117 ..      32     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8.6e-06
      TPR_19  12 alleqalqedpk.naearllLAeallalgqldeAealLdalpeedpddaryasLl 65 
                 +ll+ +++++p    e +++L   ++++g+++ A++ +d+l e++p++ ++++L+
  CCD22403.1  63 KLLTDIYKQEPSrRRECLYYLTVGCYKSGEYTMAKRYVDTLYEHEPNNKQVKTLM 117
                 7888888888888888888899999****************************98 PP

>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1     7e-06     0.025      32      81 ..     100     154 .]      44     154 .] 0.72

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7e-06
      ETRAMP  32 k......ekakkaikkiddkiekkkkkkKliiistiatalallvasalGlgiykkk 81 
                        e ++k++k   d +e k +k   +   +i+t+l++++a+++G+ + kkk
  CCD22403.1 100 VdtlyehEPNNKQVKTLMDMVEDKIQKE-SLKGIVIVTGLVAAAATVVGIVFRKKK 154
                 0555555566666666666666664433.35566789999999999***9999987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         5   1.8e+04       5      14 ..      43      52 ..      42      55 .. 0.57
   2 ?   11.2   0.0   8.7e-05      0.31       3      34 .]      79     110 ..      77     110 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5
       TPR_2  5 ynlGlayykl 14
                +n ++ ++k+
  CCD22403.1 43 FNYAWGLIKS 52
                4556655555 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 8.7e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 +ly+l   +yk+g+y  A+++ +   e++Pnn
  CCD22403.1  79 CLYYLTVGCYKSGEYTMAKRYVDTLYEHEPNN 110
                 667777789*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1098  (0.0612416); expected 358.6 (0.02)
Passed bias filter:                      812  (0.0452898); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1229.13
//
Query:       CCD22404.1  [L=277]
Description: hypothetical protein NDAI_0A02460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-26   93.2   0.3    3.7e-26   91.8   0.1    1.7  2  Methyltransf_31  Methyltransferase domain
    1.2e-09   38.8   0.0    2.5e-09   37.7   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    7.8e-07   29.8   0.0    1.6e-06   28.8   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
      9e-07   29.5   0.0      2e-06   28.4   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    1.4e-06   28.4   0.0      3e-06   27.3   0.0    1.5  1  Methyltransf_32  Methyltransferase domain
    7.3e-06   25.6   0.0    1.3e-05   24.8   0.0    1.4  1  MTS              Methyltransferase small domain
    8.4e-06   25.7   0.0    1.4e-05   25.0   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    0.00085   19.3   0.0     0.0015   18.5   0.0    1.4  1  Methyltransf_18  Methyltransferase domain
     0.0041   16.3   0.0      0.011   15.0   0.0    1.5  2  Methyltransf_20  Putative methyltransferase
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.024   14.4   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.037   13.6   0.0      0.063   12.9   0.0    1.4  1  MetW             Methionine biosynthesis protein MetW
      0.048   13.0   0.0       0.11   11.8   0.0    1.6  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.095   12.4   0.0       0.16   11.6   0.0    1.5  1  GCD14            tRNA methyltransferase complex GCD14 subunit


Domain annotation for each model (and alignments):
>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.2   1.7e+03     112     149 ..      36      75 ..      21      80 .. 0.62
   2 !   91.8   0.1   2.6e-29   3.7e-26       2     150 ..     113     261 ..     112     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.2
  Methyltransf_31 112 pr.llaelp...akveeeskayevvegakigt..qkdelyelle 149
                       + +l++++   +++e++ k    +++ k gt   +d++y+l++
       CCD22404.1  36 SNtTLRNYIkvhKEMEDTTK----LNTSKLGTkeYWDNFYNLER 75 
                      44444555555466666666....34444444568888888876 PP

  == domain 2  score: 91.8 bits;  conditional E-value: 2.6e-29
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkil 94 
                      +++ ++lDlG+G+G+l+fel+ e  +++ + G+D+se+++ +Are+a+++ ++  ++F+q+di+e    +++ kfD++l++++l+a+a +   l
       CCD22404.1 113 QNDASMLDLGTGNGHLLFELY-ENEFNGPMLGVDYSEQSVAFAREIAKSKDIEsTIKFSQADIFENG--WNPGKFDIVLDKGTLDAIALSGIKL 203
                      56789****************.55579**************************9***********88..***************9999999999 PP

  Methyltransf_31  95 e...........eiervlkpggilliedpr.llaelpakveeeskayevvegakigtqkdelyellee 150
                      e            +e++l++++i+li++++ +++el++ ve +    +++e++k        y+++++
       CCD22404.1 204 EddktvvdvygsIVENLLEKDSIFLITSCNfTQEELIKTVETDKL--KCWETIK--------YPVFQF 261
                      99999999**********************999999999988888..5665554........444444 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.8e-12   2.5e-09       2      75 ..     119     194 ..     118     203 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.8e-12
                      EEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEESTGG CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssgalh 75 
                      LdlG+G+G+l+++l ++ + ++ ++gvD+se+ ++ are a+++++   ++f q+d+ +   + g+fD+v+  g+l 
       CCD22404.1 119 LDLGTGNGHLLFELYEN-EfNGPMLGVDYSEQSVAFAREIAKSKDIesTIKFSQADIFENGWNPGKFDIVLDKGTLD 194
                      9*************998.458*********************999999*********999999*******9876665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.1e-09   1.6e-06       1      79 [.     119     196 ..     119     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.1e-09
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvvasnvlhhl 79 
                      L++G+G+G+ll++l e+  +   +gvD+s+++++ a+e  ++++    + +++ + d+++   + ++fD+v+  ++l ++
       CCD22404.1 119 LDLGTGNGHLLFELYENEFNGPMLGVDYSEQSVAFAREIAKSKD--IESTIKFSQADIFENGWNpGKFDIVLDKGTLDAI 196
                      8****************9***************77776666666..5679*******99887779***********9998 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.4e-09     2e-06       1      73 [.     119     195 ..     119     213 .. 0.90

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 1.4e-09
                      EEET-TTSHHHHHHHHTT..SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg..arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhh 73 
                      Ld+G+G+G l+ +l ++   +  +gvD+s++ ++ a+e a+ +++  +++f +ad+ +   + ++fD+v+ + +l+ 
       CCD22404.1 119 LDLGTGNGHLLFELYENEfnGPMLGVDYSEQSVAFAREIAKSKDIesTIKFSQADIFENGWNPGKFDIVLDKGTLDA 195
                      8**************55558****************999999999999**********************9988876 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   2.2e-09     3e-06       8      91 ..      98     176 ..      96     187 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2.2e-09
  Methyltransf_32   8 rlaelvakllkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsiee 91 
                      ++++++ + + e  k +++ +++D+G G+g+L f l+   +e++  ++g+d +e+ v+ a+++a+     +++ ++f++++i e
       CCD22404.1  98 KMVAFLTEHIGE-YKIQNDASMLDLGTGNGHLLFELYE--NEFNGPMLGVDYSEQSVAFAREIAKSKD--IESTIKFSQADIFE 176
                      577888888888.57778999*****************..669*********************9988..88899999988765 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   9.3e-09   1.3e-05      23     102 ..     103     188 ..      98     190 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 9.3e-09
                 HHHHCHCC...TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTTT.STTS-EEEEE CS
         MTS  23 Lletlpke...lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvlee.veekkfdliv 102
                 L e++ +     + ++lDlG+G+G l  +l +++ +  +  vd + +++++a+e ++++++e  +++ + d++e+ ++++kfd+++
  CCD22404.1 103 LTEHIGEYkiqNDASMLDLGTGNGHLLFELYENEFNGPMLGVDYSEQSVAFAREIAKSKDIEstIKFSQADIFENgWNPGKFDIVL 188
                 5555555444456679********************99************************99********98736799999986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0     1e-08   1.4e-05       6      87 ..      96     188 ..      92     199 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1e-08
  Methyltransf_23   6 eeelsdkl.erllpk.lraggrvLdiGcGtGillevlrengf..svtgvDlspeaveiae..........kakkaqkdqfdeqeaae...pqgk 82 
                      e+++ ++l e ++++  + +++ Ld+G+G G+ll +l en f   + gvD s++ v+ a+          ++k++q d f      e   + gk
       CCD22404.1  96 ERKMVAFLtEHIGEYkIQNDASMLDLGTGNGHLLFELYENEFngPMLGVDYSEQSVAFAReiakskdiesTIKFSQADIF------EngwNPGK 183
                      556666662445566459999***********9999999999889************99977766666655555555555......12224458 PP

  Methyltransf_23  83 fdlIv 87 
                      fd++ 
       CCD22404.1 184 FDIVL 188
                      88775 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.1e-06    0.0015      12      77 ..     112     177 ..     106     200 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.1e-06
  Methyltransf_18  12 vekgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGlek 77 
                      ++++++++D Gt  g+l ++l++++    ++ +D +e++++ a+e ++++++e+ i++  +d +e+
       CCD22404.1 112 IQNDASMLDLGTGNGHLLFELYENEFNGPMLGVDYSEQSVAFAREIAKSKDIESTIKFSQADIFEN 177
                      678899****************************************************99998876 PP

>> Methyltransf_20  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.7e-06     0.011     132     198 ..     113     177 ..      95     179 .. 0.84
   2 ?   -2.1   0.0       1.2   1.7e+03      96     114 ..     187     205 ..     178     229 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.7e-06
  Methyltransf_20 132 grpvrildiaaGhGryvldalekaeervesillrdyselnveqGraliaekglediarfekgdafde 198
                      +++  +ld+ +G G  +++  e++ +    +l  dyse  v+  r+++++k++e+ ++f+++d f++
       CCD22404.1 113 QNDASMLDLGTGNGHLLFELYENEFN--GPMLGVDYSEQSVAFAREIAKSKDIESTIKFSQADIFEN 177
                      456789**********9999888776..567889*******************************85 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
  Methyltransf_20  96 lidrqyldaiGWrGirqrk 114
                      ++d+  ldai   Gi++  
       CCD22404.1 187 VLDKGTLDAIALSGIKLED 205
                      6899999999999999764 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.7e-05     0.024      58     133 ..      96     174 ..      54     187 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
                 -HHHHHHHHHHTT...--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-G CS
        PCMT  58 aphmvalalelle...lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDG 133
                 + +mva+++e++    +++ a++L++G+G G l   l++  + +g +++++++++ v+ a++  k +d+e  +++  +D 
  CCD22404.1  96 ERKMVAFLTEHIGeykIQNDASMLDLGTGNGHLLFELYEN-EFNGPMLGVDYSEQSVAFAREIAKSKDIEsTIKFSQADI 174
                 568*********9999***************987666654.456789**************9999999986677888874 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.6e-05     0.063      11      66 ..     112     165 ..     105     211 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.6e-05
        MetW  11 ikpgsrvldlGcGdGellellke.ekqvdgrGleldeegvaecvakGlsviqgdldk 66 
                 i++ + +ldlG+G+G+ll  l e e +    G++ +e++va   a+ ++   +d+++
  CCD22404.1 112 IQNDASMLDLGTGNGHLLFELYEnEFNGPMLGVDYSEQSVAF--AREIA-KSKDIES 165
                 788999**********99766540444455688888887753..33332.2223333 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1         3   4.1e+03      54      82 ..      36      63 ..      12      84 .. 0.56
   2 ?   11.8   0.0   8.2e-05      0.11     158     230 ..     111     187 ..     100     190 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3
        PrmA 54 eevkvkalfkeeteakeliaqlkeselgl 82
                +++++  + k+++e++++ ++l++s+lg+
  CCD22404.1 36 SNTTLRNYIKVHKEMEDT-TKLNTSKLGT 63
                445556666666666655.3344444433 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8.2e-05
        PrmA 158 lvkegeevlDvGtGSGiLaiaaakLg.akkvvavDiDevAvkvakeNaelNkveaklevalseellk....eekadvi 230
                  +++++++lD+GtG G L       +    +++vD+ e++v  a+e a+  ++e+ ++   ++++++     +k+d++
  CCD22404.1 111 KIQNDASMLDLGTGNGHLLFELYENEfNGPMLGVDYSEQSVAFAREIAKSKDIESTIKF-SQADIFEngwnPGKFDIV 187
                 478999**********998877666524589************************9976.455555433336788887 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.16      36     111 ..     110     185 ..      99     253 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
       GCD14  36 LelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvckeGf.deevs 111
                  ++++ + +++ GtG g l   +    +  G +  +++ eq + +are  +++++++ ++ ++ D+ ++G+   + +
  CCD22404.1 110 YKIQNDASMLDLGTGNGHLLFELYEN-EFNGPMLGVDYSEQSVAFAREIAKSKDIESTIKFSQADIFENGWnPGKFD 185
                 57888899999999999999998875.779****************************************9444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1993.45
//
Query:       CCD22405.1  [L=353]
Description: hypothetical protein NDAI_0A02470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-34  116.3   0.0    2.6e-33  114.9   0.0    1.8  1  Ran_BP1        RanBP1 domain
     0.0041   17.0   0.0     0.0073   16.2   0.0    1.4  1  WH1            WH1 domain


Domain annotation for each model (and alignments):
>> Ran_BP1  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.0   2.9e-37   2.6e-33       1     118 [.     231     349 ..     231     353 .] 0.97

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 2.9e-37
                 ----SSTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-TTS-E.EESTTESSEEEEEEEE-TTSSSEEEE CS
     Ran_BP1   1 evksgEEdEevlfkqraKLfrfdaekkewkeRGvGdiKilkkkddekvRllmRrdqvlkvcaNhvitkemkl.kplagsdrslvwtaadaadeeakleq 98 
                 +vksgEE+E+++f+ +aKL++++  k++wkeRG+G iK++k+++++k R++mR + v+kv++N  ++k +++ k++ gs +s+++++  a+d+++ ++q
  CCD22405.1 231 DVKSGEESEDCIFQANAKLYQLSDIKSGWKERGLGTIKVNKDNKTGKARIIMRTRTVMKVILNLPLVKGFTIhKGFPGSLQSEKFVRIIAVDDKNLPVQ 329
                 79**********************************************************************9************************** PP

                 EEEEESSHHHHHHHHHHHHH CS
     Ran_BP1  99 laikfkkkeeadefkkkfee 118
                 +a+k++k+e++  ++ ++ +
  CCD22405.1 330 YALKTGKEETTTGLYDAMID 349
                 ***********999887755 PP

>> WH1  WH1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.2e-07    0.0073       9      75 ..     240     304 ..     233     318 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.2e-07
                 EEEEEEEEEEEEEETTTTCEEEECECEEEEEEEEETTTTEEEEEEEETTT-SEEEEEEE-SS---B- CS
         WH1   9 qtiasavaqvyladpakketWikakhagavslvkdstqnsyflrlvklqdakvvieqeiyknleynq 75 
                   i++a a++y+  + k   W++ +  g++++ kd+     +++++     kv+++  ++k+++  +
  CCD22405.1 240 DCIFQANAKLYQLSDIKSG-WKE-RGLGTIKVNKDNKTGKARIIMRTRTVMKVILNLPLVKGFTIHK 304
                 679**********888877.***.***********************88*************99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2459  (0.137152); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                       188  (0.0104858); expected 17.9 (0.001)
Passed Fwd filter:                        94  (0.0052429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.38u 0.37s 00:00:01.75 Elapsed: 00:00:00.56
# Mc/sec: 1889.81
//
Query:       CCD22406.1  [L=171]
Description: hypothetical protein NDAI_0A02480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-38  132.1  11.7    3.3e-38  131.3  11.7    1.3  1  RGI1      Respiratory growth induced protein 1


Domain annotation for each model (and alignments):
>> RGI1  Respiratory growth induced protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.3  11.7   1.9e-42   3.3e-38      50     194 .]      21     157 ..       8     157 .. 0.93

  Alignments for each domain:
  == domain 1  score: 131.3 bits;  conditional E-value: 1.9e-42
        RGI1  50 pirefddleafeafirdetwdnefdylharlkyyppfilkevhdnlekikptvnknskkfkrnlqhhvkkhlikdlekcsGy.eldfdkaevvetpkkl 147
                 +++ f+dl++fe++i++et dnefd +h++lkyyppf+l +++d+ ekik t+n++skkf r+l+ hv+khl+kd++      +l+f++   +et +k+
  CCD22406.1  21 QLKVFEDLNDFETYIKNETEDNEFDNVHCHLKYYPPFVLHDARDDPEKIKDTANSHSKKFVRHLHQHVEKHLLKDIKMALDQpDLKFKNKSKQETFEKI 119
                 7899************************************************************************99876439*************** PP

        RGI1 148 kwkfkdesdhGfskeeedkydrhwklelevscnnenalvevdykaip 194
                 +w+++de++           d+++k+ +ev+cn + a+v+vdyk+ p
  CCD22406.1 120 VWNYDDETE---------LNDKRFKVTVEVTCNHDGAMVDVDYKTAP 157
                 ****99774.........56889*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1116  (0.0622455); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1267.56
//
Query:       CCD22407.1  [L=805]
Description: hypothetical protein NDAI_0A02490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-42  144.0   2.9    1.3e-42  144.0   2.9    1.9  2  Vhr1            Transcription factor Vhr1
  ------ inclusion threshold ------
      0.073   11.8   0.1       0.13   11.0   0.1    1.3  1  Glyco_transf_6  Glycosyltransferase family 6


Domain annotation for each model (and alignments):
>> Vhr1  Transcription factor Vhr1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   2.9   1.4e-46   1.3e-42       3      90 ..       7      94 ..       5      95 .. 0.97
   2 ?   -2.8   0.1      0.88   7.9e+03      39      54 ..     787     802 ..     784     803 .. 0.83

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 1.4e-46
        Vhr1  3 sgvthkireklnftdekkWkrfssrrLeLidkleLsekkaseqdeeikkiaeiLrtefeypeetlkefekLvraavqsvrrnrkrssk 90
                +++t++ire lnf+de kWk+fssrrLeLidk++Ls+ kaseqd +ik+ia+iLrtef+yp ++++efekLv+aavqsvrrnrkrs  
  CCD22407.1  7 NTTTKQIREILNFNDELKWKQFSSRRLELIDKFNLSHFKASEQDYNIKQIATILRTEFGYPIKYSQEFEKLVTAAVQSVRRNRKRSRN 94
                5799*********************************************************************************975 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.88
        Vhr1  39 ekkaseqdeeikkiae 54 
                 +k aseq+  + ++++
  CCD22407.1 787 SKDASEQNPAVASVSK 802
                 678*****99999876 PP

>> Glyco_transf_6  Glycosyltransferase family 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.4e-05      0.13     140     193 ..      15      68 ..       7     103 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.4e-05
                     EEEEBS--SSHHHHHHHHHHHHHHHHHHHHH.HHSSEEEEEESSEEE-S-B-GGG CS
  Glyco_transf_6 140 kvlevksekrWqdismrrmelisefiakriq.kevdylvcvdvdmvfkdevGvei 193
                     ++l+ + e +W++ s rr+eli +f   +++ +e dy +   +  +++ e+G  i
      CCD22407.1  15 EILNFNDELKWKQFSSRRLELIDKFNLSHFKaSEQDYNI-KQIATILRTEFGYPI 68 
                     69999************************9836899976.457777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 5240.80
//
Query:       CCD22408.1  [L=641]
Description: hypothetical protein NDAI_0A02500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   12.1  13.2      0.059   11.6  13.2    1.3  1  PAT1      Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  13.2   3.3e-06     0.059     201     340 ..     255     389 ..     159     523 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.3e-06
        PAT1 201 EaamraqakkkaaqaaaaaaasqqPaaeqaeqaeaaaqaakaeqaqqapesakeqqqeqeqaaqaqqkkeqgkpvtilqrpqskqakpaepsasseaqe 299
                   +m    + ++ +a ++++  + P                  q+qq+p+++++qqq+q+q++q+   ++ + ++ +++rp+  q + + +++ ++ +e
  CCD22408.1 255 SRSMAPGPPPSQ-PAYSQPSPVSGPRGLY-------------PQQQQQPQQQQQQQQQQQQQQQPLIPRNDTANIPVIRRPNIPQIRYQYQHQYQNIKE 339
                 444433322222.1122222222233222.............344444444444444444444444444444444444444444333222222222111 PP

        PAT1 300 .........akqqappakvqptqilqnpnrlaarlelsqkeqaaaqaape 340
                          +  +++ a++ ptq l++pn      +l +++  ++++  +
  CCD22408.1 340 pttrrqyfqKPPAKKLAPTYPTQTLNQPNSSGPLNRLMSSNLINNNSIDT 389
                 22333222133333344456999999999883333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1801  (0.100452); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 4303.92
//
Query:       CCD22409.1  [L=563]
Description: hypothetical protein NDAI_0A02510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-30  105.7   0.0    3.8e-30  104.8   0.0    1.4  1  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    1.6e-26   92.6   0.0    4.6e-26   91.2   0.0    1.8  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
    1.7e-14   53.9   0.0    3.2e-14   53.0   0.0    1.5  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
     0.0034   17.2   0.0     0.0093   15.7   0.0    1.7  1  CO_dh         CO dehydrogenase beta subunit/acetyl-CoA syntha


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.0   8.4e-34   3.8e-30       2     169 ..       5     177 ..       4     179 .. 0.92

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 8.4e-34
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   t++++l+++L++  v+++fg+pG+ +l lld++ e  g+r+    +E +aa+aAdgyar++g + ++++t g+G ++al+++a+ + +++ +l+++g
    CCD22409.1   5 TLGRYLFERLHQVSVDTIFGLPGDFNLTLLDKVYEVAGMRWAGNANELNAAYAADGYARIKG-MSCLITTFGVGELSALNGIAGSYAEHVGVLHVVG 100
                   8899********************************************************97.99999999************************** PP

                   E--CCCHH.....S..TC--T..-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  99 drptslrg.....qgvlqqel..dqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                    ++t+++      +++l +        +  ++ + +  +t+ +++p +++r+irt  +  ++Pvyl +p++ ++ +v+
    CCD22409.1 101 TPSTTSQAkglllHHTLGNGDftVFHRMSSNISETTAMLTDITAAPAEIDRCIRTT-YIAQRPVYLGIPANFFDLKVP 177
                   ********88888666664445445566779*************************.99999*********9988776 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0     1e-29   4.6e-26       4     123 ..     204     323 ..     201     328 .. 0.91

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 1e-29
                   HHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTT. CS
  TPP_enzyme_M   4 aaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgsep. 98 
                   ++el+k++k+p+i+v+  ++r+++++e ++l+e +++P + t+mgkg+i+e+hp+y g ++g ++ ++++ea+e+aDl+l +Ga ++d++t gs++ 
    CCD22409.1 204 VLELVKKSKNPIIVVDACASRHDVKAETNKLIELTQFPTFVTPMGKGAINEQHPRYGGvYVGTLSRPEVKEAVESADLILSIGALLSDFNT-GSFSy 299
                   789*************************************************************************************655.55553 PP

                   TTTTT-EEEEEESSCCCCTTCC--S CS
  TPP_enzyme_M  99 efapeakiihididpaeigknyqvd 123
                    +   + ++++++d   i+k+  + 
    CCD22409.1 300 SYDT-KSVVEFHSDYVRIKKATFPG 323
                   5544.48************987665 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   7.2e-18   3.2e-14      15     126 ..     400     511 ..     387     533 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 7.2e-18
                   TSSSSEEECETTTS-TTTHHHHHHHHHHH....STTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.B CS
  TPP_enzyme_C  15 vkrprsyltsgglgtmGyglpaAiGakla....kpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfggkrksgpagkd 107
                   + +  +++++ ++g++G++ +  +Ga +a    +p+r+v+ ++GDG+++ ++qe++t++r nl+  ++vlnN+gy   +  + p+ + ++       
    CCD22409.1 400 FPKNVTCISQVLWGSIGFATGCTLGATMAaeelDPKRRVILFTGDGSLQLTVQEISTMIRWNLKPYLFVLNNKGYTIEKLIHGPTAAYNE------- 489
                   4556677788899***************54555899***************************************999887666555332....... PP

                   S----HHHHHHHTTSE.EE..E CS
  TPP_enzyme_C 108 lkpvdfaklaealGak.ga..r 126
                    +   + kl e +Gak     r
    CCD22409.1 490 IQHWEHLKLLETFGAKdYEnyR 511
                   4556788888888888444444 PP

>> CO_dh  CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.1e-06    0.0093      17      90 ..     194     266 ..     178     290 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.1e-06
                 X--EEE--SHHHHHHHHHSSSEEEEE-S--.-HH.HHHHHHHHHTSSSEEEEETHHHTT-G..GGSE-HHHHHH CS
       CO_dh  17 kkatleealkvvakmikkakrPllivGpqvlkaeneeakekkilekklkvvatalkeaglkdyekknklveltk 90 
                  +a + eal +v +++kk k+P+++v   + +  ++ +++k i+  + ++  t++ +  +++ ++ +  v +  
  CCD22409.1 194 PEA-EKEALGMVLELVKKSKNPIIVVDACASRHDVKAETNKLIELTQFPTFVTPMGKGAINEQHPRYGGVYVGT 266
                 344.4567799*******************************************99999998888887666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       357  (0.0199119); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3977.59
//
Query:       CCD22410.1  [L=274]
Description: hypothetical protein NDAI_0A02520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-26   92.4   3.0    2.8e-26   91.1   2.4    2.0  2  Tho1_MOS11_C  Tho1/MOS11 C-terminal domain
    1.9e-10   40.3   2.5    2.4e-10   39.9   0.4    2.4  3  SAP           SAP domain
  ------ inclusion threshold ------
      0.096   12.4   0.0       0.21   11.4   0.0    1.5  1  HeH           HeH/LEM domain


Domain annotation for each model (and alignments):
>> Tho1_MOS11_C  Tho1/MOS11 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.36   2.1e+03      31      42 ..      25      37 ..      19      47 .. 0.61
   2 !   91.1   2.4   4.7e-30   2.8e-26       1      56 []     174     229 ..     174     229 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.36
  Tho1_MOS11_C 31 elekqle.RieKF 42
                   l+k+l+ Ri K+
    CCD22410.1 25 GLKKDLVdRITKY 37
                  4555553366665 PP

  == domain 2  score: 91.1 bits;  conditional E-value: 4.7e-30
  Tho1_MOS11_C   1 aeeikqqaielLekklkRakKFgqeeeaidelekqleRieKFGvdlntqlavelGl 56 
                   +eeik++a++lL+kkl+RakKFg+++++id+ ek+++RieKFG+d+nt+la+elGl
    CCD22410.1 174 QEEIKKMALDLLNKKLHRAKKFGSDQNEIDSFEKMIARIEKFGLDMNTALAEELGL 229
                   69*****************************************************8 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.4   4.1e-14   2.4e-10       1      35 []       4      38 ..       4      38 .. 0.97
   2 ?   -2.8   0.0         1     6e+03      27      34 ..     208     215 ..     207     215 .. 0.87
   3 ?   -1.9   0.0      0.52   3.1e+03      12      22 ..     223     233 ..     222     236 .. 0.77

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 4.1e-14
                HTT--HHHHHHHHHHTT--TTS-HHHHHHHHHHHH CS
         SAP  1 lskltVaeLKeeLkkrGLptsGkKaeLieRLkeyl 35
                ++ ltV++LK +L + GL++ G+K++L++R+++y+
  CCD22410.1  4 YTRLTVPQLKTLLTEKGLSVEGLKKDLVDRITKYD 38
                789******************************96 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1
                 HHHHHHHH CS
         SAP  27 LieRLkey 34 
                 +i+R++++
  CCD22410.1 208 MIARIEKF 215
                 79***987 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.52
                 HHHHTT--TTS CS
         SAP  12 eLkkrGLptsG 22 
                 + +++GL+t+ 
  CCD22410.1 223 LAEELGLATKK 233
                 67899**9975 PP

>> HeH  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.5e-05      0.21       4      19 ..       7      22 ..       5      25 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.5e-05
         HeH  4 LtVaqLRriLvehgve 19
                LtV+qL++ L+e+g +
  CCD22410.1  7 LTVPQLKTLLTEKGLS 22
                9************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1754  (0.0978303); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.28s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2045.07
//
Query:       CCD22411.1  [L=248]
Description: hypothetical protein NDAI_0A02530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-14   52.9   0.0    6.4e-14   52.4   0.0    1.2  1  HAD_2           Haloacid dehalogenase-like hydrolase
    2.5e-10   41.0   0.0    1.4e-08   35.3   0.0    2.1  1  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0012   18.9   0.0     0.0023   18.0   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   1.1e-17   6.4e-14       2     178 .]      14     195 ..      13     195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.1e-17
       HAD_2   2 iFDlDgTlldteeliiqafnelleeyglselseeelrkli.glslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeL.keagykl 98 
                 +FD+DgT++ ++++++++++  +e+   + ++ e++ ++  g  + +++ k++++    + +++l  ++  +  + +   ++g+ +l ++L k  + k 
  CCD22411.1  14 LFDVDGTIIISQPALAAFWKDFAEDK--PYFNAEHVIHVShGWRTFDAIAKFAPDFADRDYVTKLEGEIPIKFGE-HSIQVPGAVDLCNDLnKLPKEKW 109
                 8**********************888..46999998887626788899999999888777777776666666666.99999******99994446899* PP

       HAD_2  99 givTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekalekl.......klkkeeviyvGDsptDieaakkagikviav 178
                 +++Ts++ e++ + +e lgi++  +  +t++dv+k KP+p++++   + l       + ++++vi+++D p +i a+k+ag+k+++v
  CCD22411.1 110 AVATSGTFEMASKWFELLGIKRP-TYFITANDVKKGKPNPDPYLMGRNGLgypinekDPSRSKVIVFEDAPAGIAAGKAAGCKIVGV 195
                 *******************9876.5567899**************99999888877788999*********************9987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   2.4e-12   1.4e-08       1     210 []      10     189 ..      10     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 2.4e-12
                 SSEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrt 99 
                 +++ +fD+dGT++ ++p +  +++                       a+ k   ++ ++        ++  g + + +              a + +  
  CCD22411.1  10 VNAALFDVDGTIIISQPALAAFWKDF---------------------AEDKPY-FN-AEHVI-----HVSHGWRTFDAIA----------KFAPDFADR 70 
                 6899**********************.....................444443.22.23333.....4555655555555..........667777777 PP

                 HHHHTTHHHHHHHHH..HTHHBHTTHHHHHHHHHHTTE.EEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHT.......S CS
                 xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......x RF
   Hydrolase 100 vallqaralavftia..dplkvkpeaaeavasLkaagi.evvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLq.......g 188
                  ++   ++ +++ i+  +     p+a+++++ L++    +++++t++  e+a +  + lG +     i++ +++ +kp+p+ ++   + L+        
  CCD22411.1  71 DYVT--KLEGEIPIKfgEHSIQVPGAVDLCNDLNKLPKeKWAVATSGTFEMASKWFELLGIKRPTYFITANDVKKGKPNPDPYLMGRNGLGypinekdP 167
                 7888..777777777778889*************996659********************333366688888889***************999886555 PP

                 TGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 189 kpeevamVGDgvnDaaalaaAg 210
                 + ++v++++D + ++aa++aAg
  CCD22411.1 168 SRSKVIVFEDAPAGIAAGKAAG 189
                 5999*****************8 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.8e-07    0.0023       3      50 ..     144     197 ..     142     215 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.8e-07
                     STTSSHHHHHHHHHH---.......GGGEEEEES-TTTHHHHHHHCT-EEEEESS CS
  Hydrolase_like   3 gKPepemydfalevlgsd.......peevlmiGDrlatDiagAnnaGwksvLVlt 50 
                     gKP+p  y + ++ lg +       +++v++  D   + ia++++aG+k v V+t
      CCD22411.1 144 GKPNPDPYLMGRNGLGYPinekdpsRSKVIVFEDA-PAGIAAGKAAGCKIVGVAT 197
                     9**************6666666666889*******.99***************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1891.72
//
Query:       CCD22412.1  [L=122]
Description: hypothetical protein NDAI_0A02540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-42  142.7   4.7    3.3e-42  142.7   4.7    1.5  2  Ribosomal_L34e  Ribosomal protein L34e
  ------ inclusion threshold ------
       0.35   11.3   2.1       0.41   11.0   0.1    2.1  2  EndIII_4Fe-2S   Iron-sulfur binding domain of endonuclease II


Domain annotation for each model (and alignments):
>> Ribosomal_L34e  Ribosomal protein L34e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   4.7   3.7e-46   3.3e-42       1      94 []       1      94 [.       1      94 [. 1.00
   2 ?   -2.3   0.5      0.62   5.5e+03      55      70 ..     102     117 ..      98     121 .. 0.51

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 3.7e-46
  Ribosomal_L34e  1 MvqrltyrrrlsYntrsnkvrvvktpggklvyqykkkkgkapkCgdckkkLqGipalrpkelsrlsktkktvsRaYGgslcakcvkerivrafl 94
                    M+qr+t+rrr+ Ynt+snk++vvktpgg l++q++kk++++pkCgdc+ +L G++alrp++++++skt+ktvsR YGgs+c++cvkerivrafl
      CCD22412.1  1 MAQRVTFRRRNPYNTKSNKIKVVKTPGGILRAQHVKKQASRPKCGDCGIALPGVAALRPRQYATVSKTHKTVSRVYGGSRCSNCVKERIVRAFL 94
                    9********************************************************************************************8 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.62
  Ribosomal_L34e  55 palrpkelsrlsktkk 70 
                     +++ +++ + ++k +k
      CCD22412.1 102 KKVVKEQTEAAKKAEK 117
                     4444444455555554 PP

>> EndIII_4Fe-2S  Iron-sulfur binding domain of endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   4.6e-05      0.41       3      14 ..      39      50 ..      38      50 .. 0.90
   2 ?   -1.1   0.2       0.3   2.7e+03       7      12 ..      80      85 ..      80      85 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.6e-05
  EndIII_4Fe-2S  3 ARkPkCeaCPLa 14
                   A +PkC+ C +a
     CCD22412.1 39 ASRPKCGDCGIA 50
                   889******986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.3
  EndIII_4Fe-2S  7 kCeaCP 12
                   +C  C+
     CCD22412.1 80 RCSNCV 85
                   699996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1293  (0.0721178); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 941.83
//
Query:       CCD22413.1  [L=144]
Description: hypothetical protein NDAI_0A02550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-42  144.5   0.7    1.7e-42  144.3   0.7    1.1  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.3   0.7   9.4e-47   1.7e-42       3     120 ..      28     142 ..      26     143 .. 0.96

  Alignments for each domain:
  == domain 1  score: 144.3 bits;  conditional E-value: 9.4e-47
                    TSTTTSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--E CS
  Ribonuc_L-PSP   3 aapaaaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaPa 98 
                     ap aaa+Ysqa+ka+n+vyvsGq+p++p +++ veg++ ++++q+++n++++L+a+++sl+++Vkv+vFladi++f+e+n vya++f+++k  Pa
     CCD22413.1  28 LAPPAAASYSQAMKANNFVYVSGQIPYTP-ENKPVEGSISDKAEQVFQNVRNILEASNSSLDKIVKVNVFLADINNFKEFNGVYAKYFNTHK--PA 120
                    6899************************9.66667********************************************************8..** PP

                    EEEEE-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP  99 rsaveVaaLpkgakvEIeaiav 120
                    rs+v+V+aLp ++++E+e+iav
     CCD22413.1 121 RSCVAVKALPLNVDLEVEVIAV 142
                    *********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1149.06
//
Query:       CCD22414.1  [L=503]
Description: hypothetical protein NDAI_0A02560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-49  167.4   1.8    3.2e-49  167.4   1.8    3.4  3  Cyclin    Cyclin


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   3.7      0.55   9.9e+03      55      55 ..     127     127 ..      32     229 .. 0.61
   2 ?   -1.5   0.3      0.16   2.8e+03      24      50 ..     254     280 ..     215     294 .. 0.61
   3 !  167.4   1.8   1.8e-53   3.2e-49       1     161 []     301     469 ..     301     469 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.55
                 . CS
      Cyclin  55 s 55 
                 s
  CCD22414.1 127 S 127
                 0 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.16
                 ----------T................ CS
      Cyclin  24 asadsksnlensqkqssshtkttfaqt 50 
                 ++++ +++ ++   +s+s+ kt+ + t
  CCD22414.1 254 KANHRNNKNSKILEKSQSNDKTNNDST 280
                 333333333333344445555554443 PP

  == domain 3  score: 167.4 bits;  conditional E-value: 1.8e-53
                 HHHHHHHHHHHHHHHHHHH--------------T.....................T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH... CS
      Cyclin   1 dkliqqlsllldrlvanndetatasadsksnlensqkqssshtkttfaqtpkessFatkavpaisigsylsrlqkfgesaplvllgtliYldrivk... 96 
                 d+l+++l +lld++v+ nd+  t+++  + +  n    s+s+++ + a  + +++F++k vp+i + +y++r+qk+++++++v+l++l+Y+dri+k   
  CCD22414.1 301 DNLLEMLTALLDKIVKSNDKLNTSQSPTSPPPLN----SNSENNNKNAYYNSILAFKGKHVPQITLHQYFQRIQKYCPTTNDVFLSLLVYFDRISKrcn 395
                 67899*************9987765555554444....6777777789999*********************************************777 PP

                 ...........H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT-- CS
      Cyclin  97 .........rcvsealvvtsanihRllivallvatKflvDlsysnekfakvggislkELnkLEidFlflvdFdl 161
                             s+++v++s+nihRl+i++++v+tKf++D++ysn+++a+vggisl+ELn+LE++Fl+l+dF+l
  CCD22414.1 396 stpttnsinDNNSQMFVMDSYNIHRLIIAGITVCTKFFSDFFYSNSRYARVGGISLQELNHLELQFLILCDFEL 469
                 777777777677899*********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1454  (0.0810977); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3800.84
//
Query:       CCD22415.1  [L=439]
Description: hypothetical protein NDAI_0A02570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-92  311.2  42.5    1.2e-92  311.0  42.5    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
        7.5    6.5   8.8       0.21   11.5   1.1    2.4  2  CAAD            CAAD domains of cyanobacterial aminoacyl-tRNA


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.0  42.5   1.3e-96   1.2e-92      17     438 ..       1     398 [.       1     400 [. 0.99

  Alignments for each domain:
  == domain 1  score: 311.0 bits;  conditional E-value: 1.3e-96
  Transp_cyt_pur  17 iWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfG.irgsllplllrvviaivwfgvqawiGs 109
                     +W++an++i+ +++g+lg +++ Ln++ svlvii++n++g+  va+++++Ga+ Gl+++ilsR++ G ++++++ l++  +ia+v++g+ ++++s
      CCD22415.1   1 MWFSANMVIASYTLGGLGpIVYNLNFGTSVLVIIFFNILGLLSVAFFSVFGAEFGLRQMILSRFLLGnVTARIFALIN--IIACVGWGIVNTVAS 93 
                     8*****************************************************************************..*************** PP

  Transp_cyt_pur 110 ealllmlgkifgkwleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegGpvldkavklgkselfl 204
                     ++ll+m++++ + +l++g ++++++ t+lvtff++ ++++++++ +++++++f vi+a l  ++ f  ++w+ + +++G+vl+    +g      
      CCD22415.1  94 AQLLNMVNQGNSCPLWAG-CLVIVGCTVLVTFFGYNIIHAYEKWSWIPNFAVFLVIIARLKMSGNFSGGEWTSGPTTAGGVLS----FG------ 177
                     **********888*****.****************************************************************....55...... PP

  Transp_cyt_pur 205 savagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdet.agvllililvalaqlgv 298
                     sav+g++ g++t+++   D+t+y+++ ++++ki+++ v++l+++l++++il+aa a aa +++ w ++     +d++ +g+++++ilv+++ +g+
      CCD22415.1 178 SAVFGFATGWTTYAA---DYTVYMPRRTNKYKIFFSLVAGLSFPLFFTMILGAASARAAVNTPEWMAY-----YDKNgLGGVTYAILVPNSLHGF 264
                     9**************...**************************************************.....****9***************** PP

  Transp_cyt_pur 299 nisanllsagldlaallP..kkinikrgsliaavialvivpwkllsssskl..ftaflsllavflspvagviiadyfvvrrgylklaalytrrrg 389
                     + ++++l+a++++a+++P  ++i++++++l  +  ++++v+w++l++++++  +++++++++ f+++++++i+ +y+++++++ +++++++r+ +
      CCD22415.1 265 GEFCCVLLAMSTVANNIPnmYTIALSVQALYHPFSKVPRVVWTMLGNAATVgiAIPACYYFDEFMQYFMDSIG-YYLAIYIAISCSEHFIYRKGF 358
                     ****************************************************9********************.*****************99** PP

  Transp_cyt_pur 390 saYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsyl 438
                       Y+++++ N + ++++i+G+ a +vg         ++g+++++++ y+
      CCD22415.1 359 KGYNIEDWNNSKKLPIGIAGTSALIVG---------AFGVALGMCQVYW 398
                     ***************************.........8999999999998 PP

>> CAAD  CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   1.3       1.1   9.8e+03      44      59 ..      33      48 ..      31      49 .. 0.78
   2 ?   11.5   1.1   2.3e-05      0.21      13      69 ..      79     135 ..      69     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.1
        CAAD 44 pplleLvGlgytgwFv 59
                  ++ ++Gl+ +++F 
  CCD22415.1 33 IIFFNILGLLSVAFFS 48
                5689999999988886 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 2.3e-05
        CAAD  13 klkviglilaaivalklalavldaiddiPllpplleLvGlgytgwFvyryLlkaekR 69 
                  ++ +g++++  va   +l++++  ++ Pl ++ l +vG  + + F+  +++ a ++
  CCD22415.1  79 IIACVGWGIVNTVASAQLLNMVNQGNSCPLWAGCLVIVGCTVLVTFFGYNIIHAYEK 135
                 5788999999999999999***************************99888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3122.24
//
Query:       CCD22416.1  [L=252]
Description: hypothetical protein NDAI_0A02580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-08   33.0  10.0    5.2e-08   33.0  10.0    2.3  2  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
  ------ inclusion threshold ------
      0.058   13.2   0.2        6.2    6.6   0.0    2.4  2  RhoGAP      RhoGAP domain


Domain annotation for each model (and alignments):
>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.1   9.5e+03     120     128 ..      20      28 ..       9      45 .. 0.48
   2 !   33.0  10.0   5.8e-12   5.2e-08      34     150 .]     143     252 .]      86     252 .] 0.84

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.1
  Steroid_dh 120 ltvraaahh 128
                 +++ ++   
  CCD22416.1  20 IGFLSVIVA 28 
                 222222233 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 5.8e-12
  Steroid_dh  34 edylkkdrlllgivlfvlgmliniksdiiLrelrkegetkykiprgglFelvsapnyfgEilewigyalvtkslaalaFalftvlnltvraaahhkwyk 132
                 +++    r  + +++f+l+   + k +  L      +  ky++p+  lF+lvs+p+y+ E++ + ++   + +   + F +++++ l+++a+++ ++y+
  CCD22416.1 143 QEIPRYPRDTFTFLIFFLASWDQYKNHEVLA-----NLVKYSLPKERLFKLVSCPHYLDELIIYGSFIA-FNNEFCWLF-VWVFVSLGISALETKAFYQ 234
                 4455555667788899999999999999999.....6689************************88855.553444444.478899************* PP

  Steroid_dh 133 kkfekYpksRkiliPfvf 150
                  kf++    + +++Pf++
  CCD22416.1 235 LKFKDEVVPKYAMVPFIL 252
                 *****99999******96 PP

>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0   0.00069       6.2      73     122 ..      28      81 ..      17      84 .. 0.79
   2 ?    4.4   0.0    0.0033        30      93     121 ..     135     163 ..      94     178 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00069
                 TGGHHHHHHH...HHTSSSHHHHHHHHHHHHT.TS-HHHHHHHHHHHHHHHHHH CS
      RhoGAP  73 tkelyeelie...aaksedeeerlealkelle.kLPkenrdtLryLlehLkrva 122
                  k ++++++e   + k +de +++  l+++++ ++Pk+ ++ ++yL ++L+ v+
  CCD22416.1  28 AKLYLPDFLEygkTLKDHDEPQNKTILQKIIHfTVPKAYFSHFYYLSSVLSLVT 81 
                 5556667776444556678888899999*9999*****************9886 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0033
                 HHHHHHHHTTS-HHHHHHHHHHHHHHHHH CS
      RhoGAP  93 lealkellekLPkenrdtLryLlehLkrv 121
                 +  +k  +++ P+  rdt+++L+ +L   
  CCD22416.1 135 ILGIKLHYQEIPRYPRDTFTFLIFFLASW 163
                 667888899****************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1839.60
//
Query:       CCD22417.1  [L=1158]
Description: hypothetical protein NDAI_0A02590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-51  176.1  12.3      1e-51  176.1  12.3    2.2  3  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    6.1e-18   64.3   1.1    6.1e-18   64.3   1.1    2.0  2  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    1.6e-12   47.3   0.0    4.6e-12   45.8   0.0    1.7  1  E1-E2_ATPase     E1-E2 ATPase
    6.2e-12   46.3   0.3    6.2e-06   26.6   0.5    3.2  2  Hydrolase        haloacid dehalogenase-like hydrolase
    2.9e-10   40.1   0.0    2.1e-09   37.3   0.0    2.2  2  Cation_ATPase    Cation transport ATPase (P-type)
     0.0031   17.3   0.5      0.022   14.5   0.0    2.4  2  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.6       2.6   7.8e+03      59      76 ..     194     210 ..     179     240 .. 0.56
   2 ?   -0.9   0.4      0.37   1.1e+03     150     175 ..     417     443 ..     359     487 .. 0.43
   3 !  176.1  12.3   3.5e-55     1e-51       2     248 ..     916    1146 ..     915    1147 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.6
  PhoLip_ATPase_C  59 qslyeswlltlynllfts 76 
                      + lye++  +++nl f +
       CCD22417.1 194 TILYEQF-KFFFNLYFLI 210
                      2233222.2233333322 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.37
  PhoLip_ATPase_C 150 lqlfgtlvftalvlvvnlkval.etkt 175
                      +++++ +   +++ +  + v+l  +++
       CCD22417.1 417 INNISKILCACVFALSIILVVLaGFHN 443
                      222222222221111111111111222 PP

  == domain 3  score: 176.1 bits;  conditional E-value: 3.5e-55
  PhoLip_ATPase_C    2 raSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsael 93  
                        a+D++i+qF++L++LLl+hGr+sy+R +kl ++++++ +++ ++q+++++ + f    ly++wl++ y +++t+ pv+ l ++d+d++++l
       CCD22417.1  916 LAADFSITQFCHLTELLLWHGRNSYKRSAKLAQFVMHRGLIIAICQAVYSICSKFEPIALYQGWLMVGYATCYTMAPVFSL-TLDHDIDESL 1006
                       69*****************************************************************************99.********** PP

  PhoLip_ATPase_C   94 llkyPelYklgqknklfnlktfllwileglyqsliifflsylvlddssfsdgktndlqlfgtlvftalvlvvnlkvaletktwtliliilil 185 
                        + yPelYk+++++k +++ktf++w++ +++q+ ii  +s  +++        t+d++ + +++ftal+l  +++vale++tw+ i++++ +
       CCD22417.1 1007 TKIYPELYKELTEGKSLSYKTFFVWVALSFFQGSIIQGCSQGFTS------LLTDDFSKMVAISFTALILNELIMVALEIYTWNKIMVLTEI 1092
                       **************************************9666654......4689************************************* PP

  PhoLip_ATPase_C  186 gsillyflflllyssllpsssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffp 248 
                       +++l+y++++ ++ +++         + e +  ++f+  ll++v+++++p ++ k+++r ++p
       CCD22417.1 1093 ITLLVYVVSVPFLGEYF---------DLESMLALKFYGELLFIVLISVFPVWAAKAIHRKLHP 1146
                       *************9965.........45666789*************************9987 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   1.1   2.1e-21   6.1e-18      11      59 ..     173     221 ..     153     229 .. 0.87
   2 ?   -3.6   0.0       3.2   9.4e+03      31      40 ..     710     719 ..     709     719 .. 0.83

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 2.1e-21
  PhoLip_ATPase_N  11 kkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqis 59 
                      +++y+sN+Is++KY+++tF+p  L+eqF+ + NlYFL++a+ q +P+++
       CCD22417.1 173 RNRYPSNEISNAKYNAITFVPTILYEQFKFFFNLYFLIVALSQAVPALR 221
                      469*******************************************986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.2
  PhoLip_ATPase_N  31 pknLfeqFrr 40 
                       kn +eqF++
       CCD22417.1 710 SKNAYEQFKK 719
                      6899****86 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   1.5e-15   4.6e-12      17     172 ..     263     474 ..     244     482 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 1.5e-15
                   E.......EEGGG--TTSEEEEETT-B--SEEEEEE.....E-SEEE-TTTS---S-EE-..................................... CS
  E1-E2_ATPase  17 e.......idakelvpGDivllkagdrvpaDgrive.....gsaevdesaLTGEslpvek..................................... 64 
                   e       +++k+l++GD++++ +g+rvpaD ++++     g++ +++ +L GE  +  +                                     
    CCD22417.1 263 EalsqpklVASKDLKVGDLIKIHKGSRVPADLVLLQssepsGESFIKTDQLDGETDWKLRiacpltqnipesdlvnkitvtasaplkniheflgrit 359
                   155555569***************************666666669************999************************************* PP

                   .........G-TTEE-TT-EEEE.-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHH CS
  E1-E2_ATPase  65 .........ekgdmvfsGtvvvs.geakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallra 151
                            +  +++ + tv  s g ++a V+ tg+dt+ +     + ++k k+  l+ ++++++k+l + v++++++++++a +++ ++   ++r 
    CCD22417.1 360 ykgstshalSVDNTLWANTVLASsGFCIACVIFTGRDTRQS---LNTTKPKVKTGLLELEINNISKILCACVFALSIILVVLAGFHNSDWYVDIMRY 453
                   ******9999**********988799***********9743...333444466778999************************************** PP

                   HHHHHHHS-TTHHHHHHHHHH CS
  E1-E2_ATPase 152 lallvaaiPcaLplavplala 172
                   l l+  +iP  L + + la +
    CCD22417.1 454 LILFSTIIPVSLRVNLDLAKS 474
                   ***********9987777655 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.5   2.1e-09   6.2e-06       3     195 ..     505     832 ..     503     835 .. 0.66
   2 !   13.7   0.0   1.9e-05     0.057     178     210 .]     871     901 ..     840     901 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.1e-09
                 EEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH.......HHHHHHHHHETTTEHHHHTHHHHHHHH...HCHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar.......sgaltgfatfigrgayaigkpewltal...dippdlgaaig 91 
                  ++ Dk+GTLt+  ++++++        ++ l ++s+  +    +++ +         s + +++       +++     +       +++p ++++  
  CCD22417.1 505 YLLSDKTGTLTQNDMELKKIHLGTVSYTSETLDIVSDYVHSLVDTNKDDSKrtasgmlSTSRKDISS-----RVCDMILTL---AichNVTPTFDDDEL 595
                 5788*******99999999777773333444444433333333322222222232222222222222.....222222222...022223333333322 PP

                 HHHHHCHHHHHH....................................................................................... CS
                 xxxxxxxxxxxx....................................................................................... RF
   Hydrolase  92 saqsqgrtvall....................................................................................... 103
                 ++q++  +++                                                                                         
  CCD22417.1 596 TYQAASPDEIAIvkftesvglslfkrdrhsitllhgqsgttlnydilqvfpfnsdskrmgvivhdnqkdeywfmqkgadtvmtkivenndwleeetgnm 694
                 222222222222336666666666666666666666666666667888888888888888888888888888888888888888888888888888888 PP

                 ...................................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHH CS
                 ...................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 ...................................................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaera 151
                                                                    + ++l++  ++d+  + ++++  ++ L+ agi++++ltgd  eta+ +
  CCD22417.1 695 areglrtlvigrkklsknayeqfkkeyddaslsmvnrdiqmnqviskyleyDLELLGLTGVEDK--LQKDVKSSIELLRNAGIKIWMLTGDKVETARCV 791
                 88888888889999999**********************************99***********..*******************************66 PP

                 HHHTTGGGE.SEEEEHHCESSTTTSHHHHHHHHHHHTSTGGGEEE CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 152 anqlGddyf.daviasdietvakpspegkvaaireLqgkpeevam 195
                    +    +  + + ++i++ +  +peg +  ++ L+++ + ++ 
  CCD22417.1 792 SISAK--LIsRGQYVHIITKLS--KPEGALNQLEYLKINRNACLL 832
                 55566..222333333344333..568888888877777777765 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 178 gkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 +   +ire+ gk   v+ +GDg nD+++++ A+
  CCD22417.1 871 DIALIIREFTGKR--VCCIGDGGNDVSMIQSAD 901
                 5567899997777..***************997 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0     7e-13   2.1e-09       3      86 ..     583     679 ..     581     683 .. 0.86
   2 ?   -0.6   0.0      0.47   1.4e+03      11      35 ..     772     796 ..     763     820 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 7e-13
  Cation_ATPase   3 cNsaafsensekdevkllGnktEsALlvlaeklgldteelree..............tkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeii 84 
                    c++ +    ++++ +    +++E+A+++++e +gl+  + +++              ++++q++pFns+ Krm+v++  +++ ++  + KGA  ++
     CCD22417.1 583 CHNVTP-TFDDDELTYQAASPDEIAIVKFTESVGLSLFKRDRHsitllhgqsgttlnYDILQVFPFNSDSKRMGVIVHDNQKDEYWFMQKGADTVM 677
                    666666.5566666777889*************888888888888899999999999***********************************9877 PP

  Cation_ATPase  85 lk 86 
                    +k
     CCD22417.1 678 TK 679
                    65 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.47
  Cation_ATPase  11 nsekdevkllGnktEsALlvlaekl 35 
                    n+  + + l+G+k E+A  v ++++
     CCD22417.1 772 NAGIKIWMLTGDKVETARCVSISAK 796
                    66678899*********87766665 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.28   8.5e+02     158     169 ..     756     767 ..     655     833 .. 0.59
   2 !   14.5   0.0   7.2e-06     0.022     203     227 ..     881     905 ..     875     925 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.28
                  HHHHHHHCTTTE CS
  Hydrolase_3 158 ekelksklnkll 169
                  e++l++++++ +
   CCD22417.1 756 EDKLQKDVKSSI 767
                  444444433322 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 7.2e-06
                  GGGEEEEESSGGGHHHHHHSSEEEE CS
  Hydrolase_3 203 leeviafGDgeNDieMLeaaglgvA 227
                   ++v  +GDg ND++M++ a++gv 
   CCD22417.1 881 GKRVCCIGDGGNDVSMIQSADVGVG 905
                  57899****************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 7542.78
//
Query:       CCD22418.1  [L=1120]
Description: hypothetical protein NDAI_0A02600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-87  292.3  33.2    5.1e-87  292.3  33.2    1.6  2  EXS       EXS family
    7.5e-40  138.0  44.8    7.5e-40  138.0  44.8    2.6  2  SPX       SPX domain
  ------ inclusion threshold ------
        1.7    8.6   4.2        4.1    7.3   4.2    1.6  1  DUF2527   Protein of unknown function (DUF2627)


Domain annotation for each model (and alignments):
>> EXS  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2      0.61   3.6e+03     220     243 ..     582     605 ..     557     614 .. 0.66
   2 !  292.3  33.2   8.5e-91   5.1e-87       1     331 []     620     972 ..     620     972 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.61
         EXS 220 desestlrvlwllaalvnslysfi 243
                 ++ + ++  l++ +a++ +ly+++
  CCD22418.1 582 AIVQMSIASLFIGFAFILTLYTLY 605
                 344555666777777777777766 PP

  == domain 2  score: 292.3 bits;  conditional E-value: 8.5e-91
         EXS   1 lplpyrvlllvvlglllwalnlhvlsklginyalifeldprsslsyrqlye.............laalllllllllllllllsaevdalellpllllll 86 
                 l+++++++++v+l+l+l+ +n+++++k+giny++i+  +  +s + +q+y+             ++++++l+++++++l   s++ + l+ + +++ ++
  CCD22418.1 620 LFPMWSGWYMVFLILFLFIINCFIWYKTGINYRFIMFGEI-KSRNGTQFYNndfattrislnlyFLSFFILICSIFAAL---SFHLNDLNPFGIIFPCT 714
                 689*********************************9999.99999999988887777765443344444444444444...55555555555555555 PP

         EXS  87 lllllllp..lnilyr....ssrrrflrtllrillaplapvefadfllaDiltSlakvlgDlaltvclyasswseedrkcgss.svvvplllslPyliR 178
                 +++l+l+p  +ni+y+    ++r ++++t++r+++++++pvef+df+++D ++Sl+++++D+a+++c+     ++ ++ cgss s+ + ++++lP+++R
  CCD22418.1 715 IIALFLMPsfINIPYWnkliQTRIFLITTFIRLFFSGFFPVEFTDFFMGDLICSLTYSMSDIAMFFCIN---SNNPNKVCGSShSISMGVMSCLPSYWR 810
                 55555555334467777799*************************************************...4444889*777355566********** PP

         EXS 179 frQclreyrdtkkr.phllNalKYatafpvivlsalqrlsksdesestlrvlwllaalvnslysfiWDvtmDWgLlkllksknwflRdellypkkw... 273
                 ++Qclr+y+d++++ phl+N +KY+++++++++ +++rls+++    + r+ ++++a++ns+ ++iWD+ mDW+Ll +  s+nwflR++l++  k    
  CCD22418.1 811 AMQCLRRYTDSGDWfPHLINSIKYTLGIIYYATLCAYRLSNHS---MARRKPFIIFATLNSMITSIWDIIMDWSLL-QTGSTNWFLRNDLYLAGKKnpd 905
                 *******************************************...88899*************************.666679******9666544577 PP

         EXS 274 ..........vYylaivldlvlRftWslklsshlhsiqeselgvfllellEvlRRwvWvffRvEnEhv 331
                           +Yy+a+++d+++Rf+W+++++++ +siq++++++f+l+++E+lRR++Wv+fRvEnEhv
  CCD22418.1 906 tgqykmrrklIYYFAMIWDIIIRFQWIVYAIAP-DSIQQNAWTSFVLAITEILRRFIWVIFRVENEHV 972
                 7888888888*********************99.*********************************7 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0  44.8   1.3e-43   7.5e-40       1     383 [.       1     487 [.       1     488 [. 0.65
   2 ?   -3.4   1.3       1.2   7.1e+03     206     272 ..    1023    1091 ..    1001    1116 .. 0.36

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 1.3e-43
         SPX   1 MKFakeLeenlvpEWrdaYldYkqLKKlIkkvqreleslgleaetlrellnrpedskkksse...rtepstsaaadesgnsaadasssepkdeae.... 92 
                 MKF+ +L e+ +pEW+d+Y+dYk++K  +kk + + +  + ++ + ++l+ +p +++++ ++   +++p++++ + ++++      ++++k++      
  CCD22418.1   1 MKFGDHLRESTIPEWKDKYIDYKTGKRILKKYRSKFQ--NYDHINNNHLTVTPGPTDINGNQidlNQNPIRKNEHLQKQQ------QQRVKQKVNyctp 91 
                 **********************************444..47777777777777777777766766555555444433322......2222222224544 PP

         SPX  93 ....slprrsplsrssrssssygglvssppsansssssddssesnpadssssssssesesssssspsllrrlfs...............esesreekse 172
                     ++++++++ ++ +s++s ++l++  + + ss+s+++s+ ++        +s++++ s sss+ +l++l s               +++++++++ 
  CCD22418.1  92 qdlrRNTSSNNNLNNLPSHLSSSALSNLTNGSISSTSKHNSPFPS--------RSASPNISASSSNISLNSLNSlntlknlnnknnnnkPKQQQQQQQP 182
                 445444444444455555555555555555555555555555555........7777777777777777777667777778755555554445555555 PP

         SPX 173 rsyetrplraekeFfe..rLdseLnkvetFykakeeefterlesLrkqleal.rprrikeaeer...ksdlyrwre...ifglksveaqvfessreldr 262
                  +y+++ ++a +eF+e  +  +eL k+++Fy + ++++ ++  +L++q++    +++i++++++   +   +++++    +++++++++  +ss++ + 
  CCD22418.1 183 LKYTEDQKDAIHEFIEnwLIKEELTKCNDFYLWLVNDCKKKMIILENQIKFYnFQKNIQLSKNNisnN---NNNNNnnnNNNNNNNNNNTDTSSDNMND 278
                 555555556*******98889*******************************8888888777775432...2222222322222233333333333333 PP

         SPX 263 gelse...................................................eardkevseelekngwikptksklekkrneralekvk...... 304
                 ++++                                                     ++++++ ++                          +      
  CCD22418.1 279 TNNDTdenilllppntststtnisntdttlinslsknnnnnnnnkddqileitattTSDTNDNPQNT-------------------------Hrnklyg 352
                 3333367778888887777777766655555544433333332233333333333322222222222.........................0222333 PP

         SPX 305 ...............................................pektlkafldsvrrdylrk.........enrvklkkakkklkkafvelYrgL 347
                                                                 +k+ + +++++r++ + k          ++  + +a+k l +a++e+Y  L
  CCD22418.1 353 tisnkknikskydkhnhytkqlaefldrnrlmpslpslqnipqlqniYNKRSQSIHHHHRKSSIGKetftpdmisFSQITISQAQKLLSDAIIEFYLFL 451
                 333333333333444555555555666666666666666776887888999**************9********************************* PP

         SPX 348 elLKsYqeLNrtAFrKIlKKfDKvtaltaskrymke 383
                 +l KsY++LN+t+FrKI KKfDK+++++  +++m++
  CCD22418.1 452 QLAKSYRDLNVTGFRKIIKKFDKTCHTKELNKFMTF 487
                 **********************************97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.2
         SPX  206 eefterlesLrkqleal.rprrikeaeer...ksdlyrwre.......ifglksveaqvfessreldrgelseeardk 272 
                  e  +++ e+L+  l+++  ++++  a+ +   +     ++        ++  +   a  f++ + + +++   e +d 
  CCD22418.1 1023 ETTLNENENLNFTLSNMeHEFQQPSAAYHslvR-----KNAsmfdnigRSIPW-AHATDFQRPQMKAATN---EYDDT 1091
                  333344444444444443332222111111111.....111122223222222.3333333333333332...22222 PP

>> DUF2527  Protein of unknown function (DUF2627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.2   0.00068       4.1      21      36 ..     138     153 ..     128     155 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00068
     DUF2527  21 SAePYlsASsSNvSvL 36 
                 SA P +sASsSN S  
  CCD22418.1 138 SASPNISASSSNISLN 153
                 9************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2521  (0.14061); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.05u 0.29s 00:00:01.34 Elapsed: 00:00:00.51
# Mc/sec: 6564.11
//
Query:       CCD22419.1  [L=767]
Description: hypothetical protein NDAI_0A02610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      9e-36  121.3  26.6    1.1e-06   29.2   0.7    8.0  8  WD40         WD domain, G-beta repeat
    5.8e-12   45.3   1.7    1.1e-11   44.5   1.7    1.5  1  F-box-like   F-box-like
    8.2e-12   44.5   7.4     0.0046   15.7   0.1    5.3  5  Nup160       Nucleoporin Nup120/160
    6.5e-08   32.3   2.8    1.5e-07   31.2   2.8    1.7  1  F-box        F-box domain
    8.7e-07   29.2   0.6        4.2    7.7   0.0    5.6  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.043   13.7   1.1       0.13   12.2   1.1    1.8  1  PAN_4        PAN domain
        1.1    8.3   6.4        3.1    6.8   6.4    1.8  1  BPL_N        Biotin-protein ligase, N terminal


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   9.8e-07    0.0025       4      38 .]     355     388 ..     352     388 .. 0.90
   2 !   23.3   0.2   3.3e-08   8.4e-05       2      38 .]     393     428 ..     392     428 .. 0.89
   3 !   29.2   0.7   4.4e-10   1.1e-06       1      37 [.     432     467 ..     432     468 .. 0.95
   4 !   27.6   0.7   1.5e-09   3.7e-06       5      38 .]     475     509 ..     471     509 .. 0.92
   5 ?    3.5   0.0      0.06   1.5e+02       2      16 ..     514     529 ..     513     554 .. 0.78
   6 !   11.6   0.0   0.00015       0.4      20      38 .]     591     609 ..     575     609 .. 0.88
   7 !   20.9   0.9   1.8e-07   0.00046       1      38 []     613     649 ..     613     649 .. 0.84
   8 ?   -3.5   0.1         7   1.8e+04       1       9 [.     653     661 ..     653     661 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.8e-07
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++++GH ++v  l  + + ++l++Gs+D t+ iWd
  CCD22419.1 355 IQEFKGHlDGVLTL--QFNYRLLFTGSYDSTIAIWD 388
                 788****999*999..778999*************9 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 3.3e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++r l+GH ++v  l  + d + l++Gs D+t+r+W+
  CCD22419.1 393 KLIRRLSGHtDGVKTL--HFDDQKLVTGSLDKTIRVWN 428
                 67899****777****..88888899***********8 PP

  == domain 3  score: 29.2 bits;  conditional E-value: 4.4e-10
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 gqc+ t++GH +s+ s+  +++++ ++sGs D+t+++W
  CCD22419.1 432 GQCISTYRGHtDSIMSV--DSYKKIIVSGSADKTIKVW 467
                 79********888****..999999************* PP

  == domain 4  score: 27.6 bits;  conditional E-value: 1.5e-09
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +tl+GH  +v++++ +p +   +sGsdD t+r+Wd
  CCD22419.1 475 YTLRGHtEWVNCVKLHPKSFTCFSGSDDTTIRMWD 509
                 799***888************99***********9 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.06
                 EEEEEEESS.SSEEEE CS
        WD40   2 qclrtltGH.ssvtsl 16 
                 +cl++++GH + v  +
  CCD22419.1 514 SCLKIFKGHvGQVQKV 529
                 79*******6666544 PP

  == domain 6  score: 11.6 bits;  conditional E-value: 0.00015
                 TTSSEEEEEETTSEEEEEE CS
        WD40  20 pdgawlasGsdDgtvriWd 38 
                 p+ + l+s+s D+t+++Wd
  CCD22419.1 591 PYPTHLLSCSLDNTIKLWD 609
                 55667889**********9 PP

  == domain 7  score: 20.9 bits;  conditional E-value: 1.8e-07
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+c+rt  GH  +v+++    d+  ++sGs Dg+++iWd
  CCD22419.1 613 GKCIRTQFGHvEGVWDI--AADNFRIISGSHDGSIKIWD 649
                 68999977**8889999..55555588**99*******9 PP

  == domain 8  score: -3.5 bits;  conditional E-value: 7
                 TEEEEEEES CS
        WD40   1 gqclrtltG 9  
                 g+c++t+ G
  CCD22419.1 653 GKCMHTFHG 661
                 79****987 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   1.7   4.2e-15   1.1e-11       2      46 ..     221     264 ..     220     266 .. 0.95

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 4.2e-15
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlv 46 
                 s LP E+ l+I+syL+ ++L++ + VC++W+ +a d+ ++W++++
  CCD22419.1 221 SILPKELSLKILSYLDCQSLCNSTSVCKKWKLLADDD-RVWYHMC 264
                 67********************************999.*****98 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   2.6e-06    0.0066     229     256 ..     411     438 ..     396     454 .. 0.79
   2 ?    0.9   0.0     0.055   1.4e+02     229     252 ..     451     474 ..     441     481 .. 0.82
   3 !    5.5   0.0    0.0022       5.7     234     255 ..     497     518 ..     483     535 .. 0.85
   4 !   15.7   0.1   1.8e-06    0.0046     231     256 ..     594     619 ..     567     624 .. 0.87
   5 !    7.1   0.0   0.00072       1.8     237     269 ..     640     671 ..     623     689 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-06
                 TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclati 256
                 +++ l++ s+d+++rvWn++tg+c++t 
  CCD22419.1 411 DDQKLVTGSLDKTIRVWNYKTGQCISTY 438
                 66778999******************94 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.055
                 TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkc 252
                  ++++++ s d++++vW +++ +c
  CCD22419.1 451 YKKIIVSGSADKTIKVWHVESRTC 474
                 67889999***********99988 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0022
                 EEEETT-EEEEEETTTTEEEEE CS
      Nup160 234 falsrdgkLrvWnlltgkclat 255
                 f+ s d ++r+W+++t++cl  
  CCD22419.1 497 FSGSDDTTIRMWDIRTNSCLKI 518
                 666889*************976 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 1.8e-06
                 TEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclati 256
                 t+l++ s+d+++++W+++tgkc++t+
  CCD22419.1 594 THLLSCSLDNTIKLWDVKTGKCIRTQ 619
                 89*********************996 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.00072
                 ETT-EEEEEETTTTEEEEEEE--.-SSSTTS-- CS
      Nup160 237 srdgkLrvWnlltgkclatidllrdeeaqdess 269
                 s dg +++W+l++gkc+ t+  ++ +  qd+s 
  CCD22419.1 640 SHDGSIKIWDLQSGKCMHTFHGKKLQ-PQDDSN 671
                 78*****************9888333.333333 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   2.8   5.7e-11   1.5e-07       3      46 ..     220     263 ..     218     265 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 5.7e-11
                 HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH CS
       F-box   3 lsrLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwcks 46 
                 +s LP e+ ++IL++L+  +l++  +V+k+w+ l d+dr w + 
  CCD22419.1 220 ISILPKELSLKILSYLDCQSLCNSTSVCKKWKLLADDDRVWYHM 263
                 899**************************************765 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0036       9.3      52      91 ..     374     412 ..     346     453 .. 0.60
   2 ?    3.6   0.0     0.033        84      11      79 ..     456     522 ..     450     533 .. 0.77
   3 ?    2.2   0.0     0.086   2.2e+02      56      75 ..     599     618 ..     593     629 .. 0.84
   4 !    7.7   0.0    0.0016       4.2      53      79 ..     636     662 ..     626     668 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0036
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                  lL  +  d+++ + d  s k+++ ls +++  v++l++ +
   CCD22419.1 374 LLFTGSYDSTIAIWDLCSNKLIRRLSGHTD-GVKTLHFDD 412
                  555555555555555555555555555554.255555433 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.033
  ANAPC4_WD40  11 AlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                    +++d+ + v  ++ +  +tl   ++ + v++++ +p+      + +d+++r+ d+ +  +++ ++ +
   CCD22419.1 456 VSGSADKTIKVWHVESRTCYTL--RGHTEWVNCVKLHPKSFTCFSGSDDTTIRMWDIRTNSCLKIFKGH 522
                  5556677777777777777777..788899999999999999999999999999999999988877655 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.086
  ANAPC4_WD40  56 aysdgevrlldaesgkvvhs 75 
                     d++++l d+++gk++++
   CCD22419.1 599 CSLDNTIKLWDVKTGKCIRT 618
                  4569************9975 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0016
  ANAPC4_WD40  53 Lavaysdgevrlldaesgkvvhslsvk 79 
                  +  + +dg++++ d +sgk++h+++ k
   CCD22419.1 636 IISGSHDGSIKIWDLQSGKCMHTFHGK 662
                  678999****************99765 PP

>> PAN_4  PAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.1   5.1e-05      0.13      15      38 ..     231     254 ..     224     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.1e-05
       PAN_4  15 adspeaCcaaCaadsnCnawvyvk 38 
                   s+ +C+++C+++s C+ w   +
  CCD22419.1 231 ILSYLDCQSLCNSTSVCKKWKLLA 254
                 56899***************7655 PP

>> BPL_N  Biotin-protein ligase, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.4    0.0012       3.1     274     374 ..      35     130 ..      14     133 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0012
       BPL_N 274 vpslsplllsslskeeveelleslkeklaaekeeeeevikdendtfrlekedeeeaeeaaeeeeeekedleevvkeilvvkeeeelpskkltplFdiea 372
                 + ++ + +lss++k++++++++s +++  ++ ++++++ ++ +d+ +l++e++++++e++  + ++   ++++ k++   + + +  s+k++p+F++++
  CCD22419.1  35 NGHIASSMLSSPNKRKIDAIIDSNSNSNSNS-NSNSKMTNSIQDNTSLSSETHDQTHEQRLPTPKK---VKSIKKQLKESSLS-TNLSSKTLPEFNFTK 128
                 4455666899999999999999988844444.5577999999*******99966555544444444...55555555333332.33567999*****99 PP

       BPL_N 373 Yf 374
                 + 
  CCD22419.1 129 FC 130
                 95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2193  (0.122316); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.50
# Mc/sec: 4614.25
//
Query:       CCD22420.1  [L=677]
Description: hypothetical protein NDAI_0A02620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-29  100.5   6.5    1.8e-28   99.0   6.5    1.8  1  CBM_21       Carbohydrate/starch-binding module (family 21)
    1.1e-08   35.5   7.0    3.4e-08   34.0   7.0    1.8  1  CBM53        Starch/carbohydrate-binding module (family 53)
  ------ inclusion threshold ------
        1.4    6.9  14.3        1.9    6.5  14.3    1.1  1  DNA_pol_phi  DNA polymerase phi


Domain annotation for each model (and alignments):
>> CBM_21  Carbohydrate/starch-binding module (family 21)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   6.5   2.9e-32   1.8e-28      12     112 ..     558     661 ..     549     662 .. 0.90

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 2.9e-32
      CBM_21  12 lelskdkkvlvGlvaVknlafeKavavrytldnWktilevpaeyvksaeeslkenntdrFkFkiklknllnsekaklelcikYevn....eeeyWdnNe 106
                  + + ++k+++G v V+n+ f+K+v vryt+d+W++++e++a +v++a+++l ++n+d FkF i+  n+++++  +le+ci+Y ++    ++e+WdnN+
  CCD22420.1 558 QTATLKNKYIMGRVLVENIYFDKNVVVRYTWDHWNSFQEIQAIFVSNAKQILPGSNMDVFKFLIDDVNKFDNK-CHLEFCIQYVTRndteRKEFWDNND 655
                 4555599*********************************************************999988866.79*******9886665789****** PP

      CBM_21 107 gkNYev 112
                 +kNY+v
  CCD22420.1 656 NKNYTV 661
                 ****99 PP

>> CBM53  Starch/carbohydrate-binding module (family 53)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   7.0   5.7e-12   3.4e-08       2      81 .]     575     663 ..     574     663 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 5.7e-12
       CBM53   2 kvyYnkslakevtlhygfngWkssqdvamtks....assgdseedwfeatvt.vpkease..ldfvfds......egeenWDNNngqnYkvpv 81 
                 ++y++k++     ++y++++W+s q++++  +    +   +s+ d+f++ ++ v+k  ++  l+f++++      e++e+WDNN+++nY+v+v
  CCD22420.1 575 NIYFDKNV----VVRYTWDHWNSFQEIQAIFVsnakQILPGSNMDVFKFLIDdVNKFDNKchLEFCIQYvtrndtERKEFWDNNDNKNYTVDV 663
                 68888888....**************99888888885566789*******853777664446*****779**99988*************987 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  14.3   0.00032       1.9     625     713 ..     375     476 ..     372     483 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00032
  DNA_pol_phi 625 Learenkegqaelfedededeeddeeeeeeddeededse.edddeeesdedeededdedvdeidelreklaealgesg..............ededdd 707
                  L+ + ++ + +  +ed ++ e+++ ee+ ++ ++++ ++  + +++++d+d +d++de +d    ++ +l++   +++              + ++d+
   CCD22420.1 375 LNFKPKPLQRSVCYEDGEDVEDEEGEEDVSSRKKKSLKKlLNLSDDDEDDDHDDDNDERTDG--IFNLRLEKLILNDRhssiskstpirtkkKYTADN 470
                  55555555555555444444444444444444444333365666677777777777777777..6777777777666667789999999976444444 PP

  DNA_pol_phi 708 dsdsDe 713
                  dsd+D+
   CCD22420.1 471 DSDEDD 476
                  444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1161  (0.0647554); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 4532.21
//
Query:       CCD22421.1  [L=329]
Description: hypothetical protein NDAI_0A02630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-36  122.8   0.3    7.1e-36  122.8   0.3    2.9  3  ArfGap    Putative GTPase activating protein for Arf
  ------ inclusion threshold ------
       0.64    9.7   5.1        1.2    8.8   5.1    1.4  1  TMEM174   Transmembrane protein 174


Domain annotation for each model (and alignments):
>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.3   7.9e-40   7.1e-36       2     114 ..       9     124 ..       8     127 .. 0.91
   2 ?   -1.7   0.2      0.33     3e+03      72      91 ..     159     178 ..     155     216 .. 0.59
   3 ?   -1.8   3.9      0.36   3.2e+03      71     102 ..     283     314 ..     262     321 .. 0.74

  Alignments for each domain:
  == domain 1  score: 122.8 bits;  conditional E-value: 7.9e-40
                 HHHHHHCCSCCCCB-TTT.-SBS--EEETTTTEEE-HHHHHHHCCS.TTT--EEETTTS---HHHHHHHHHT.CHHHHHHHHTTTC-TTTSG.-TTCGH CS
      ArfGap   2 kalkellkepenkvCaDC.gakeptWaslnlgvflCieCsgvHrslgvhiskvrsltldkwedeelellkal.gNkkaneileaklpkeekr.sksssk 97 
                 kal++ll++p+n+ CaDC  +++p+Was++lgvf+Ci+C+gvHrslg+hiskv+s++ld+w++e+le+l ++  N+ an+++e++lp +++  ++ +++
  CCD22421.1   9 KALSALLRDPGNSNCADCkIQSHPRWASWSLGVFICIKCAGVHRSLGTHISKVKSVDLDTWKEEHLEMLIKMkNNNIANDYYENSLPGSSDLrNGITDT 107
                 78999*************7799*********************************************99865156668********8877766999999 PP

                 HHHHHHHHHHHTCHTTC CS
      ArfGap  98 ekreefirakYeekkfa 114
                 +k   fi++kYe kk++
  CCD22421.1 108 NKLILFIKNKYEYKKWI 124
                 ***************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.33
                 TCHHHHHHHHTTTC-TTTSG CS
      ArfGap  72 lgNkkaneileaklpkeekr 91 
                 +gN+++n+  +++ + +++r
  CCD22421.1 159 VGNNNNNDHNNKTAHISHER 178
                 56666666555555444444 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.36
                 HTCHHHHHHHHTTTC-TTTSG-TTCGHHHHHH CS
      ArfGap  71 algNkkaneileaklpkeekrskssskekree 102
                  + N ++n++++ +++++ + ++++++++ ++
  CCD22421.1 283 IINNTNNNSTFNMNMNMNFSTNSNNNNDRNSS 314
                 46788888888888888777755555555444 PP

>> TMEM174  Transmembrane protein 174
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.1   0.00014       1.2     150     216 ..     250     315 ..     235     324 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00014
     TMEM174 150 qplssplglkssaaavtasgppqyytiypldnaafvedeessaalavdsenerssesaeeleekale 216
                 q ++s++ ++++ ++vt+ ++p   + +p  na  +++ +++++++++++ + s++s+++++++  +
  CCD22421.1 250 Q-SQSTFFNNNNNNNVTSASTPALGSTFPSANANIINNTNNNSTFNMNMNMNFSTNSNNNNDRNSSN 315
                 2.233333688999*********************************99999999998887776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1415  (0.0789224); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2470.42
//
Query:       CCD22422.1  [L=315]
Description: hypothetical protein NDAI_0A02640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-30  105.3   0.0    5.6e-30  104.2   0.0    1.6  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.1e-29  102.6   0.0    1.8e-29  102.0   0.0    1.3  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    3.3e-05   24.0   0.0      0.097   12.8   0.0    2.3  2  NAD_binding_6  Ferric reductase NAD binding domain
  ------ inclusion threshold ------
      0.043   14.0   0.0       0.08   13.2   0.0    1.4  1  FAD_binding_9  Siderophore-interacting FAD-binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.0   1.2e-33   5.6e-30       1     108 [.     182     291 ..     182     292 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 1.2e-33
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEE.ESSCTTTSSSEESSHHHHHHHHHHH.HSSTTEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvav.vsreeagweggkgrvqdalleells.lkkeeth 94 
                    miagG+GiaP++++++ai  +++dkt+v+l+yGn +eed+l+++el+++ + +p+++k+v+   + e ++weg++g+v+ +l+e++++  ++e+++
     CCD22422.1 182 MIAGGSGIAPMFQIMKAIYLNENDKTQVTLLYGNVHEEDILLKKELDAMVSGRPDQFKIVYLlDDPEREDWEGETGYVTLELMEKYIPkPTEESVQ 277
                    9********************9****************************************8889999*******************98899*** PP

                    EEEECSHHHHHHHH CS
  NAD_binding_1  95 vyvCGppgMikavr 108
                    +++CGpp+M+  v+
     CCD22422.1 278 LLICGPPRMVGTVK 291
                    *********98876 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   4.1e-33   1.8e-29       2      99 .]      74     172 ..      73     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 4.1e-33
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSST.TECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE-S CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpisse.nekGelellvkvypgGkmsqaLdelkigdtleikGPlGk 96 
                    ++l++k+ ++++t++++f lp++++ lglp+Gqh+ ++ +i+g+ ++RsYtp+s + +++G++ellvk+yp+G++s+ + +lkig+t++  GP+G+
     CCD22422.1  74 FPLISKTILTHNTATYTFGLPHKDDILGLPIGQHISIKENIDGKMIMRSYTPTSLDsDTHGQFELLVKTYPNGNISKFIGNLKIGETINACGPQGN 169
                    6899**************************************************995599************************************ PP

                    EEC CS
  FAD_binding_6  97 feY 99 
                    +eY
     CCD22422.1 170 YEY 172
                    *99 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.2e-05     0.097       3      39 ..     179     212 ..     177     240 .. 0.78
   2 !    9.1   0.0   0.00031       1.4     125     154 ..     264     293 ..     260     295 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.2e-05
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   3 nvllvagGiGitpfisilkdllkkskkealktkkikl 39 
                     + ++agG+Gi+p+  i+k +  +++    kt+   l
     CCD22422.1 179 KLGMIAGGSGIAPMFQIMKAIYLNEN---DKTQVTLL 212
                    5779****************999987...44444433 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00031
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 125 lkdiaskhknssvgvfvCGppklvkevkkl 154
                    ++++  k  ++sv +++CGpp +v +vk+ 
     CCD22422.1 264 MEKYIPKPTEESVQLLICGPPRMVGTVKRN 293
                    55666677899***************9975 PP

>> FAD_binding_9  Siderophore-interacting FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.8e-05      0.08      65     120 ..     114     169 ..      94     170 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.8e-05
  FAD_binding_9  65 ederpvmRtYtvraldaeae.eldidfvlHgdegpaarwAaqAqpGdelaivgPgga 120
                     d + +mR+Yt+ +ld +++ ++++       +g  +++  + + G++++ +gP+g+
     CCD22422.1 114 IDGKMIMRSYTPTSLDSDTHgQFELLVKTYP-NGNISKFIGNLKIGETINACGPQGN 169
                    57799*************9975555444444.499*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2535.73
//
Query:       CCD22423.1  [L=476]
Description: hypothetical protein NDAI_0A02650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-23   82.1   1.4    5.1e-23   81.7   0.4    1.7  2  BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehy
    6.1e-13   49.3   0.1    4.3e-11   43.3   0.1    2.4  1  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like
     0.0067   16.4   0.0      0.015   15.2   0.0    1.5  1  HATPase_c_2  Histidine kinase-like ATPase domain
  ------ inclusion threshold ------
      0.041   13.7   0.0        0.1   12.4   0.0    1.6  1  HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.4   1.1e-26   5.1e-23       2     161 ..      96     253 ..      95     254 .. 0.87
   2 ?   -3.0   0.0       1.3   5.8e+03      79      98 ..     390     409 ..     323     412 .. 0.66

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 1.1e-26
  BCDHK_Adom3   2 vslrqlvqfgekpst.gtllksaqflreelpirlAhrvkelenlPdglvenpsvkkvkdwYaqsfeellelpkp.eleenekftelLekikkrHddvv 97 
                  +s   l++f +kp t ++ ++    + + l  ++++++++++nlP+++ +np++++++++Y++++e ll+ + p +l +++ + +lL+k+ ++H+d++
   CCD22423.1  96 LSYGFLTNFKKKPLTsNEKYNLTIKTINYLISYTCRQLNSIQNLPYIVITNPKINQINSLYLRTLEALLSKQFPyDLYNDDLIIDLLKKLNNEHNDNL 193
                  6677788887777554334444445556678899************************************9999789999****************** PP

  BCDHK_Adom3  98 ttlaqGvlelkekrkrkqidseiqsFLdrfymsRIgiRmLieqhiaLteqskskkepsdyvGiI 161
                    l++G++e++++       ++i +FLd++++ R++++++i+++++L    +  +++++++Gi+
   CCD22423.1 194 ILLSNGLKEIHQD---LLSRKKIFKFLDDHIKDRMSMKLIISNYLSLLAPVQL-DDDPNMIGIV 253
                  ***********88...68899****************************9886.6666****98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
  BCDHK_Adom3  79 nekftelLekikkrHddvvt 98 
                  ++++ ++ e+ +++H+++v+
   CCD22423.1 390 DDRYIDTNENALNKHSSTVE 409
                  34666666677777777765 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.1   9.5e-15   4.3e-11       5     109 ..     318     466 ..     315     469 .. 0.76

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 9.5e-15
                 HHHHHHHHHHHHHHHHHS...TTTEEEEEEEE.EETEEEEEEEESSSSSTTHHHTGTCS.TTCH................................... CS
   HATPase_c   5 rLrqiisnlvdNavkfat...kageieveika.seddlvisveDnGiGipkedlkklfe.kfsq................................... 63 
                  L+ i+ +l +N++k++      + iev++ + ++++l+i+ +D G+Gi++++  ++f+ +f++                                   
  CCD22423.1 318 ILEYIFTELFKNSIKAQLdhnVHKPIEVSLFQtDSNELTIKLRDFGKGINPNIESEIFQySFTSsnerynpiddryidtnenalnkhsstvehtlpqaa 416
                 5889***********944422333555555544338***************999955555555555555555555555555555555556777777899 PP

                 ....HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEE CS
   HATPase_c  64 ....ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftlp 109
                     dd ++++ +g G+Gl ++k++ +l++G+i+++s  g Gt+++++l+
  CCD22423.1 417 ipgsDDVNNNTISGMGYGLPLSKNYLKLFQGDINIQSLWGVGTDVYIKLK 466
                 999888888889************9999*******************997 PP

>> HATPase_c_2  Histidine kinase-like ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.4e-06     0.015      33      81 ..     320     369 ..     316     377 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.4e-06
  HATPase_c_2  33 rlaveEactNavehayleapegpvevr.lesdeealtvevaDsGpgfdpe 81 
                  +   +E++ N +++  +++ ++p+ev+ ++ d+++lt++ +D G+g +p 
   CCD22423.1 320 EYIFTELFKNSIKAQLDHNVHKPIEVSlFQTDSNELTIKLRDFGKGINPN 369
                  56789**********************9999***************8875 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.3e-05       0.1       7      55 ..     323     376 ..     318     393 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
  HATPase_c_3   7 laelvdNsldAdaen.....vkievnknrgktgeivieDdGkGmseeelknalr 55 
                   +el +Ns+ A+  +     +++++ + ++++ +i+ +D GkG++++   + ++
   CCD22423.1 323 FTELFKNSIKAQLDHnvhkpIEVSLFQTDSNELTIKLRDFGKGINPNIESEIFQ 376
                  579**********999999*****9999999*************9984444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3516.70
//
Query:       CCD22424.1  [L=364]
Description: hypothetical protein NDAI_0A02660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-77  258.8  21.3    5.3e-77  258.8  21.3    1.6  2  BAR_2     Bin/amphiphysin/Rvs domain for vesicular traffickin
    1.4e-12   47.8  17.0    5.1e-11   42.7  15.0    2.7  2  BAR       BAR domain
     0.0057   16.6   1.4     0.0057   16.6   1.4    1.9  2  DUF3439   Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> BAR_2  Bin/amphiphysin/Rvs domain for vesicular trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.32   1.9e+03      65      83 ..      11      29 ..       3      32 .. 0.46
   2 !  258.8  21.3   8.9e-81   5.3e-77       2     287 ..      36     313 ..      35     315 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.32
       BAR_2 65 ltesisdwwksigaklkel 83
                +++ +++++ ++++k +e+
  CCD22424.1 11 FNKRLQELSTTVSQKTQEF 29
                2333444444444444444 PP

  == domain 2  score: 258.8 bits;  conditional E-value: 8.9e-81
       BAR_2   2 ilsikkkttrllqeklgqvkdiskLPkqYleLEkkvDslekvykrlllvtktyevegYDYPpnltesisdwwksigaklkelknvssleedeivllgkk 100
                 i s++++t+r++qe+lgqv+dis+LP++Yl+LE+k+D++++vy+++l vt+t+e ++YDYP  ++es+ +++ks  +k++el++++s++e++ +l    
  CCD22424.1  36 INSLAQSTQRMVQERLGQVTDISQLPEEYLQLERKIDTIKSVYDNFLSVTNTFEHQSYDYPNVARESVIEFSKSAVSKVEELSHATSASEAQQIL---- 130
                 89*******************************************************************************************88.... PP

       BAR_2 101 kkekskeekesqatsallprtlaqalskaakdsslilqele......ekdedlepLikvleqvssaykeiaeakleqDslivkefnkkLeellnqefkk 193
                  +++s++ ke        p+tl++alska+  ss++l++        ++++d + ++++l+++s+++++ia+a+l+qD li ++fn++L++ ln++f++
  CCD22424.1 131 -TNNSNQIKE--------PKTLNYALSKASLISSEQLNKQFstdddnNSNSDFKLVSSILLKFSDIQAKIAQARLQQDLLIKQKFNNNLRNDLNTSFER 220
                 .344445566........****************6666543798887788899999******************************************* PP

       BAR_2 194 vhelrkkVeesRlkfdtlrseveekekpeteeedkklleklEDefvsateeAvvvmkeildssklisllklfqkaqleYfekcvkkleellknl 287
                 ++++rk+V+++Rl++d++r+++ + +kpe+e+++++++e lED+f++ate+A+ vm+ei+++s++++ l ++++aql+Y++ + + +++++kn+
  CCD22424.1 221 AQKVRKDVQNKRLQYDVARTNLLN-AKPEKEASLRVQMELLEDQFAQATEHATLVMNEIIENSNFMEYLNELARAQLAYYQLSSNIMNDFVKNI 313
                 **********************88.**************************************************************9999986 PP

>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.18   1.1e+03     116     141 ..      15      39 ..       3      47 .. 0.65
   2 !   42.7  15.0   8.5e-15   5.1e-11      12     237 ..      47     313 ..      39     315 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.18
         BAR 116 ekrvetnfldplrellekefkeiqke 141
                  +++ t++ ++++e+  + +++i++ 
  CCD22424.1  15 LQELSTTVSQKTQEFS-TNMPDINSL 39 
                 3555666777777777.777777665 PP

  == domain 2  score: 42.7 bits;  conditional E-value: 8.5e-15
         BAR  12 leekvgkaekTk.LDedFeelerrldvteklieklvkelkeylqa...npgarakqivlekl...............................keqple 75 
                 ++e +g++  +  L e++ +ler++d+ +++ +++++ ++ +       p++  +++    +                               +     
  CCD22424.1  47 VQERLGQVTDISqLPEEYLQLERKIDTIKSVYDNFLSVTNTFEHQsydYPNVARESV----IefsksavskveelshatsaseaqqiltnnsnQ----- 136
                 566677776666677777777777777777777777766655442000233333332....022233444444444444433333333333351..... PP

         BAR  76 lLaesmieagkelgedssfg.........................................kalekygeavkklaqteeelekrvetnfldplrellek 133
                                                                              ++l k+++++ k+aq+  + +  ++++f ++lr+ l++
  CCD22424.1 137 -------------------IkepktlnyalskaslisseqlnkqfstdddnnsnsdfklvsSILLKFSDIQAKIAQARLQQDLLIKQKFNNNLRNDLNT 216
                 ...................033333334444444444444444455666666788999999************************************** PP

         BAR 134 efkeiqkerkklehkrlDyDaakarlkklktkkskkakdeekaeeelrkAqqkfeesneelkaeLpnllalevefvnqlqafveaqldfhkqaaqlleq 232
                  f+  qk rk  ++krl yD a++ l  +k +k+ +      ++ +++  +++f +  e +   + +++++  +f++ l+++++aql +++ +++++ +
  CCD22424.1 217 SFERAQKVRKDVQNKRLQYDVARTNLLNAKPEKEAS------LRVQMELLEDQFAQATEHATLVMNEIIEN-SNFMEYLNELARAQLAYYQLSSNIMND 308
                 ***************************999655544......8899**********************765.5688*********************99 PP

         BAR 233 lqqql 237
                   +++
  CCD22424.1 309 FVKNI 313
                 88776 PP

>> DUF3439  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.63   3.8e+03      47      70 ..      21      44 ..      16      52 .. 0.66
   2 !   16.6   1.4   9.6e-07    0.0057      45      78 ..     319     352 ..     282     358 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.63
     DUF3439 47 ttttttttttttmpttttlptttk 70
                t +  t   +t mp   +l  +t+
  CCD22424.1 21 TVSQKTQEFSTNMPDINSLAQSTQ 44
                333445566788998888877664 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 9.6e-07
     DUF3439  45 cpttttttttttttmpttttlptttkmsmvkvpl 78 
                  pt+ttt+tttt+t    t+  +ttkm   + p+
  CCD22424.1 319 IPTSTTTATTTTATSNDDTATQSTTKMDASNTPI 352
                 5999999999999999999999*****9887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1975  (0.110157); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2437.22
//
Query:       CCD22425.1  [L=198]
Description: hypothetical protein NDAI_0A02670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.1  10.7       0.25   11.3   8.9    2.2  2  Apq12     Nuclear pore assembly and biogenesis
       0.17   11.1   5.7       0.22   10.7   5.7    1.1  1  WT1       Wilm's tumour protein


Domain annotation for each model (and alignments):
>> Apq12  Nuclear pore assembly and biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.13   1.2e+03      26      38 ..      23      35 ..      18      44 .. 0.77
   2 ?   11.3   8.9   2.8e-05      0.25       2      53 ..      51      94 ..      50      95 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.13
       Apq12 26 Rvvlfwvrllvrl 38
                  v+f++r ++rl
  CCD22425.1 23 EYVFFMIRQTIRL 35
                4489999999998 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 2.8e-05
       Apq12  2 PdlvsilllllilyvslkildrarRvvlfwvrllvrlvfwlavvlvgayvyn 53
                P+++ i++ ++ ly+++k++ +        ++++++++++ +++   + + +
  CCD22425.1 51 PTIFFIIIAIISLYIVWKVVTN--------IITIIKRLIFFTLIISMILISL 94
                9999******************........8888888888888877776655 PP

>> WT1  Wilm's tumour protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.7   2.4e-05      0.22     134     173 ..     130     169 ..     119     187 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.4e-05
         WT1 134 rnqGysavaldgapsyghtpshhtaqlsnhsfkhedalsq 173
                 r+  y  +++  +++++ht++h++++ ++++++h+++  +
  CCD22425.1 130 RENVYHMITFACTSTHTHTHTHTQTHRHTQTHRHTQTHRH 169
                 77789999**999999999999999999999999987554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1796  (0.100173); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1448.12
//
Query:       CCD22426.1  [L=471]
Description: hypothetical protein NDAI_0A02680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3148.21
//
Query:       CCD22427.1  [L=846]
Description: hypothetical protein NDAI_0A02690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-81  271.0  26.7    7.1e-81  271.0  26.7    2.7  3  Not3           Not1 N-terminal domain, CCR4-Not complex compo
    4.5e-21   75.3   1.0    1.8e-20   73.3   1.0    2.1  1  NOT2_3_5       NOT2 / NOT3 / NOT5 family
  ------ inclusion threshold ------
      0.013   15.9   1.9      0.013   15.9   1.9    4.3  5  Syntaxin_2     Syntaxin-like protein


Domain annotation for each model (and alignments):
>> Not3  Not1 N-terminal domain, CCR4-Not complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.0  26.7   1.2e-84   7.1e-81       2     230 ..       3     232 ..       2     233 .. 0.96
   2 ?   -4.3   6.3       1.7   9.9e+03     117     164 ..     235     281 ..     231     294 .. 0.62
   3 ?   -3.0   0.2      0.69   4.1e+03     165     213 ..     496     548 ..     460     572 .. 0.57

  Alignments for each domain:
  == domain 1  score: 271.0 bits;  conditional E-value: 1.2e-84
        Not3   2 krklqqeidktlkkvaegveeFdeiyeklesa.enqsqkeKleadLKkeikKLqrlRdqiktwlssneikdkkkLlenrkliEeamerFkavEkesKtK 99 
                 +rklqqe+d+++kk++eg+e F+++ye++e++ +n sqk+Kle+dLK+e+kKLqrlRdq+k+w+ss eikdk++Ll+ r+++E ame++kavEk+sK K
  CCD22427.1   3 HRKLQQEVDRVFKKINEGLEVFNTYYERHEACtNNPSQKDKLESDLKREVKKLQRLRDQVKSWQSSPEIKDKDSLLDFRRSVEIAMEKYKAVEKASKEK 101
                 8******************************96779*************************************************************** PP

        Not3 100 afSkeglakaaaekldpkekekeearewlkdaideLneqvekleaeieklsskkkkkkk.skeka.rveeleklierhkfhieklelllrlleneelep 196
                 a+S+ +l+  ++e ldp+e+e+++++++l+++ideL++q+e+l+ e++kl+  +kkkk+ s+ ++ ++e+l++++ r+++h++++el lrll neel+p
  CCD22427.1 102 AYSNISLK--KSEILDPEEQERKDVSDYLSSMIDELERQYESLQVEVDKLTLLNKKKKTaSSLNDeKKEQLKAVQARYRWHQQQMELALRLLANEELDP 198
                 ********..55569**************************************9999987666667********************************* PP

        Not3 197 eevekikedieyyvesnqdedfeedeelYddlnl 230
                 ++v+++k+di+y+vesnqd+df+ede++Yd+l+l
  CCD22427.1 199 QAVNDVKDDINYFVESNQDPDFMEDETIYDSLDL 232
                 ********************************98 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 1.7
        Not3 117 kekekeearewlkdaideLneqvekleaeieklsskkkkkkk.skekar 164
                 +e  ++e+ +++ ++ +e +e  e+ ++e  kls+k+++k + +++  +
  CCD22427.1 235 NEAIAHEVAQYFASQSREDEEDEEEDDKETSKLSKKEQRKLErEAK--K 281
                 5555677777777777777777777777777777766665542222..2 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.69
        Not3 165 veeleklierhkfhieklell..lrlleneelepeev.ekikediey.yvesn 213
                 v++ ++  +r++  +++ ++l  l  +e  +l++e+v +kike++ +  v++n
  CCD22427.1 496 VNQNNQAFHRNQSILHQTNDLpsLSTIEGRTLTEEKVpTKIKEEVATgTVDDN 548
                 44445555555544444444311555777777777773357777765233444 PP

>> NOT2_3_5  NOT2 / NOT3 / NOT5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   1.0     3e-24   1.8e-20      28     131 .]     697     796 ..     661     796 .. 0.78

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 3e-24
    NOT2_3_5  28 isypqeplyeklesakklekldedtLFyiFYysqgtleqllAakeLkkrsWryhkelktWflreekeepkekteey.ekgsYkyFDyetWlkrrkkdfk 125
                  +y +++ly+  e  +k++ l+++tLFy++Y++ ++le+++A   L++r+W+++ ++++Wflr+    p + ++e  e g+Yk+F  ++Wl ++k +fk
  CCD22427.1 697 DNYDNSQLYN--EILEKFRGLEMFTLFYNYYFAVTPLEKEIANVILNERNWKVSFDETMWFLRQ---GPIKFQNELcELGDYKIFKLDEWLVVDKINFK 790
                 2344554433..356799999*******************************************...6777777777********8779********** PP

    NOT2_3_5 126 leyekL 131
                 l+y++L
  CCD22427.1 791 LDYSSL 796
                 ***987 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   1.9   2.1e-06     0.013      37      97 ..       5      66 ..       2      68 .. 0.87
   2 ?   -1.8   2.8      0.68     4e+03      47      94 ..     102     147 ..      74     184 .. 0.66
   3 ?   -2.8   0.4       1.4   8.3e+03      42      81 ..     264     281 ..     241     285 .. 0.60
   4 ?   -2.2   0.2      0.89   5.3e+03      29      49 ..     352     372 ..     328     388 .. 0.61
   5 ?   -2.6   0.1       1.2   7.1e+03       9      31 ..     497     519 ..     495     540 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.1e-06
  Syntaxin_2 37 elieeinelikktnellkklsqldnsssds.qqklqkekLkkdfkealqeFqkiqrqyaeke 97
                +l++e+ +++kk+ne l+ ++++ +  +   ++  qk+kL +d+k+ ++++q++ +q+++ +
  CCD22427.1  5 KLQQEVDRVFKKINEGLEVFNTYYERHEACtNNPSQKDKLESDLKREVKKLQRLRDQVKSWQ 66
                799*******************9888755456667*******************99998765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.68
  Syntaxin_2  47 kktnellkklsqldnsssdsqqklqkekLkkdfkealqeFqkiqrqya 94 
                    n +lkk + ld  ++   +k   + L++ + e+ ++++++q ++ 
  CCD22427.1 102 AYSNISLKKSEILDPEEQ--ERKDVSDYLSSMIDELERQYESLQVEVD 147
                 445555666666655554..4444566666666666666666665544 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.4
  Syntaxin_2  42 inelikktnellkklsqldnsssdsqqklqkekLkkdfke 81 
                 +++                        k ++ kL ++ k+
  CCD22427.1 264 TSK----------------------LSKKEQRKLEREAKK 281
                 222......................444455566665555 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.89
  Syntaxin_2  29 eelreklhelieeinelikkt 49 
                 ++  ++l+++++ ++++ ++t
  CCD22427.1 352 PNATSQLKSSTTTTTTTTTTT 372
                 344455555554444443333 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 1.2
  Syntaxin_2   9 nsnvstleklvkqLgtkkdteel 31 
                 n+n++ + + ++ L+  +d + l
  CCD22427.1 497 NQNNQAFHRNQSILHQTNDLPSL 519
                 77788888877777777775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2911  (0.162363); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.49
# Mc/sec: 5223.32
//
Query:       CCD22428.1  [L=703]
Description: hypothetical protein NDAI_0A02700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1787  (0.0996709); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5138.81
//
Query:       CCD22429.1  [L=849]
Description: hypothetical protein NDAI_0A02710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-14   52.7   9.0      1e-13   51.1   9.0    1.9  1  bZIP_1    bZIP transcription factor
    3.2e-06   27.1   8.4    1.2e-05   25.2   8.4    2.0  1  bZIP_2    Basic region leucine zipper


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   9.0   1.2e-17     1e-13       3      61 ..     690     748 ..     688     751 .. 0.96

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 1.2e-17
                 XXXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   3 elKrekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekLks 61 
                 ++K+++ +++NR+aA+++RqRK+  + +L++ +++L+keN+ +k +l+ ++k v+k k+
  CCD22429.1 690 AWKKARLLERNRIAASKCRQRKKIAQLQLQKDFDKLTKENSIMKRKLNYYEKLVSKFKK 748
                 79*****************************************************9997 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   8.4   1.4e-09   1.2e-05      11      49 ..     699     737 ..     692     741 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.4e-09
                 XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  11 kNreAarrsRekkkakeeeleervkeLeeeNaqLrqkve 49 
                 +Nr+Aa ++R++kk+ + +l++   +L++eN+  ++k+ 
  CCD22429.1 699 RNRIAASKCRQRKKIAQLQLQKDFDKLTKENSIMKRKLN 737
                 9*******************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2278  (0.127057); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.07u 0.35s 00:00:01.42 Elapsed: 00:00:00.52
# Mc/sec: 4871.58
//
Query:       CCD22430.1  [L=369]
Description: hypothetical protein NDAI_0A02720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-57  195.2   5.0    7.3e-51  173.0   0.5    2.0  2  Pkinase         Protein kinase domain
    1.2e-18   67.4   0.4    1.6e-13   50.6   0.0    2.3  2  Pkinase_Tyr     Protein tyrosine kinase
    2.4e-05   24.4   0.0      8e-05   22.7   0.1    1.8  2  APH             Phosphotransferase enzyme family
     0.0078   15.0   0.3      0.015   14.1   0.0    1.5  2  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.026   13.9   0.4      0.076   12.4   0.4    1.7  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.045   13.3   0.2      0.045   13.3   0.2    2.3  3  Choline_kinase  Choline/ethanolamine kinase
        0.3   11.1   2.7        1.6    8.8   0.2    3.0  3  DUF496          Protein of unknown function (DUF496)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.3   6.6e-09   1.7e-05       1      57 [.      40      91 ..      40      95 .. 0.91
   2 !  173.0   0.5   2.9e-54   7.3e-51      54     264 .]     127     363 ..     119     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 6.6e-09
                EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSC CS
     Pkinase  1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkh 57
                ye ++k+G+G++++V+++v  +++ ++++K++k  k+kk k     rEi+il +l+ 
  CCD22430.1 40 YEIETKVGRGKYSEVFQGVTLSNRSKIVIKMLKPVKKKKIK-----REISILTNLSN 91
                78899****************************99988855.....7*****99985 PP

  == domain 2  score: 173.0 bits;  conditional E-value: 2.9e-54
                 HHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESS CS
     Pkinase  54 klkhpnivrlyevfee..kdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakele 149
                 ++ h+ni++l++++++  +++  l++eyv++ ++  l+    ++++ +++ ++ ++l++l+y+Hs+gi+HrD+Kp+N++id ++++l+++D+Gla+ ++
  CCD22430.1 127 HTGHENIIKLFDTIKDpiSRTPALIFEYVDNVDFRILYP---KFTDLDIRYYMFELLKALDYCHSMGIMHRDVKPHNVMIDhKNKKLRLIDWGLAEFYH 222
                 567*************5545556********99888887...5**************************************66777************* PP

                 SSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...H.HHTTS............. CS
     Pkinase 150 ssskltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklp.easei............. 233
                  + +++ +v+++ +  PE+l ++++y+ + D+Ws G +l++++++k+pf   +g++    ++dql+ki++ilg ++++    ++ei             
  CCD22430.1 223 ANMEYNVRVASRFFKGPELLvDYRMYDYSLDLWSFGTMLASMVFQKEPFF--HGTS----NTDQLVKIVRILGSEDFEKYlMKYEIvlpkefhdmdqyi 315
                 ********************999***************************..3333....7899999*****9655544404444588899999***** PP

                 .................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 .................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                  +e+++dl+++ll++d+++Rlta+e++ hp++
  CCD22430.1 316 rrpwyrfindgnrhlcdNEDIIDLIDNLLRYDHQERLTAKEAMGHPWF 363
                 ***********************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1     5e-06     0.013       2      61 ..      41      92 ..      40      97 .. 0.86
   2 !   50.6   0.0   6.1e-17   1.6e-13      55     213 ..     125     279 ..     105     296 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5e-06
                 EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BT CS
  Pkinase_Tyr  2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhp 61
                 e+++k+G+G++++V++g       +++ k+++K+lk  ++++    + +e++i+++l+++
   CCD22430.1 41 EIETKVGRGKYSEVFQGVTL----SNRSKIVIKMLKPVKKKK----IKREISILTNLSNE 92
                 57889*************99....8999*******8766555....99999999999765 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 6.1e-17
                  HHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.TTEEEE-STTT CS
  Pkinase_Tyr  55 mkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.nkvvkisDfGL 149
                  + ++ h+ni+kl   +    +++  +++eyv++ d++  L      k+t  d+  +++++ k+++y +s+ ++Hrd+   Nv++++ nk+ ++ D GL
   CCD22430.1 125 LPHTGHENIIKLFDTIKdpISRTPALIFEYVDNVDFRI-LYP----KFTDLDIRYYMFELLKALDYCHSMGIMHRDVKPHNVMIDHkNKKLRLIDWGL 217
                  56778***********97767778*********99975.444....489999999*****************************973669******** PP

                  HEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHH CS
  Pkinase_Tyr 150 ardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglknee 213
                  a+  + + ey+++  ++    +  pE l + + +  + D WsfG++l  ++ + e  ++g +n++
   CCD22430.1 218 AEFYHANMEYNVRVASR---FFKGPELLVDYRmYDYSLDLWSFGTMLASMVFQKEPFFHGTSNTD 279
                  **997777776655444...4779**998877477777*********999886666666666655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.85   2.2e+03       6      52 ..      47      94 ..      44     107 .. 0.71
   2 !   22.7   0.1   3.1e-08     8e-05     165     201 ..     188     223 ..     163     250 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.85
                --.SSCEEEEEEETT.-.-EEEEEE-TTS-HHHHHHHHHHHHHHHHTT- CS
         APH  6 sggasnrtylvttpa.g.ryvlrrnpparaaeeirrevallrlLakagv 52
                + g ++ +++ +t + + + v +   p   + +i re  +l++L++ + 
  CCD22430.1 47 GRGKYSEVFQGVTLSnRsKIVIKMLKPV-KKKKIKREISILTNLSNEKT 94
                5666677777777666646666666777.9999**********998855 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 3.1e-08
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEEC CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedaglgpp 201
                 +++++H+D +p+N+++d  + ++  +iD+++a   ++
  CCD22430.1 188 SMGIMHRDVKPHNVMIDHKNKKL-RLIDWGLAEFYHA 223
                 6799*************666666.8******987665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.77     2e+03     155     197 ..      49      92 ..      22     111 .. 0.69
   2 !   14.1   0.0     6e-06     0.015     323     364 ..     187     223 ..     177     258 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.77
  Pkinase_fungal 155 gRgTtcwrarkegergkeyvvKdsWrdaerk..sEaelLkkaeer 197
                     g+   ++++ + ++r  ++v+K+    +++k  +E  +L + +++
      CCD22430.1  49 GKYSEVFQGVTLSNR-SKIVIKMLKPVKKKKikREISILTNLSNE 92 
                     444566777776666.57788877665555445777777777555 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 6e-06
  Pkinase_fungal 323 flkagiLHrDiSenNilitdskkegerkglLiDLDlakelsd 364
                     +   gi+HrD+  +N++i     ++++k  LiD  la  ++ 
      CCD22430.1 187 H-SMGIMHRDVKPHNVMID----HKNKKLRLIDWGLAEFYHA 223
                     4.78**************9....4567788888888877764 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4     3e-05     0.076     134     165 ..     186     214 ..     179     220 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
         Kdo 134 lhragvnHadlyaknillqqeeeeeaeiwliD 165
                  h++g++H+d+ ++n++++ ++    ++ liD
  CCD22430.1 186 CHSMGIMHRDVKPHNVMIDHKN---KKLRLID 214
                 5******************997...8999999 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3       1.1   2.9e+03      93     128 ..       5      39 ..       2      53 .. 0.55
   2 ?   -1.7   0.0      0.72   1.8e+03      11      43 ..      72     102 ..      62     111 .. 0.70
   3 ?   13.3   0.2   1.8e-05     0.045     144     174 ..     188     218 ..     162     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.1
                     HHHHHHHHHHCCS.TT..ECHHGGCCHCCCTHHHHH CS
  Choline_kinase  93 lwktmqkwllnkeaqtkakkekkkkqlklinledle 128
                     +w++ + + ++ +++++++ + ++++  ++++++ +
      CCD22430.1   5 IWSESRVY-TDANKKRTTEYWDYENMTIEWSTNNKD 39 
                     56666666.555555555555555555544444433 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.72
                     -TTCTTCCHHHHHHHHHHHHHHTTSSS-EEEEE CS
  Choline_kinase  11 gkkteelidretElvvfallserglgpklygif 43 
                     ++   +  + ++E+ +++ ls+++  p ++ ++
      CCD22430.1  72 KPV--KKKKIKREISILTNLSNEKTPPTTLQFD 102
                     444..3345677899999999999888887776 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 1.8e-05
                     -EEEE-S--SGGGEEE.-CTTEEEE--GTT- CS
  Choline_kinase 144 pvvfcHnDlqegNillnkeekklvlIDFEYa 174
                     ++   H D+ ++N++ ++++kkl lID+  a
      CCD22430.1 188 SMGIMHRDVKPHNVMIDHKNKKLRLIDWGLA 218
                     46778***********************655 PP

>> DUF496  Protein of unknown function (DUF496)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.6   1.5e+03      13      22 ..      75      84 ..      60     110 .. 0.76
   2 ?    0.2   0.0      0.29   7.5e+02      15      51 ..     190     227 ..     176     233 .. 0.78
   3 ?    8.8   0.2   0.00063       1.6      19      48 ..     321     350 ..     306     358 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.6
      DUF496 13 rknklkreie 22
                +k k+krei+
  CCD22430.1 75 KKKKIKREIS 84
                4667777765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.29
      DUF496  15 nklkreiednekkirdnqkrvllle.nlleyikedmsi 51 
                   ++r+++  +  i   +k++ l++  l e+ + +m +
  CCD22430.1 190 GIMHRDVKPHNVMIDHKNKKLRLIDwGLAEFYHANMEY 227
                 55789999999999999999999984699999999976 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00063
      DUF496  19 reiednekkirdnqkrvlllenlleyiked 48 
                 r i+d ++ + dn+  ++l++nll y +++
  CCD22430.1 321 RFINDGNRHLCDNEDIIDLIDNLLRYDHQE 350
                 7899*********************97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2695.22
//
Query:       CCD22431.1  [L=320]
Description: hypothetical protein NDAI_0A02730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-43  145.8   0.1    4.3e-22   78.0   0.0    2.4  2  cNMP_binding   Cyclic nucleotide-binding domain
  ------ inclusion threshold ------
      0.023   14.0   0.0       0.04   13.2   0.0    1.3  1  PfkB           pfkB family carbohydrate kinase
      0.066   12.9   3.7        1.6    8.5   0.1    2.7  3  Cupin_2        Cupin domain
       0.15   12.1   0.0        0.4   10.7   0.0    1.7  1  Ribosomal_L27  Ribosomal L27 protein


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0   9.7e-26   4.3e-22       2      86 ..     105     184 ..     104     187 .. 0.95
   2 !   65.5   0.1   7.4e-22   3.3e-18       4      86 ..     225     303 ..     222     304 .. 0.94

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 9.7e-26
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHH CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflell 86 
                   ++++++++i++qGd++d++y+v+sG v+      dg  ++++  g+G+ fGelal++++pr+atv Altd++l+al+r +f+++l
    CCD22431.1 105 KHIPKDTIIIKQGDEGDYFYVVESGNVEYI---VDG--NTVNSSGAGSSFGELALMYNAPRAATVKALTDCHLWALDRLTFRKIL 184
                   7899*************************4...899..679******************************************97 PP

  == domain 2  score: 65.5 bits;  conditional E-value: 7.4e-22
                   E-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHH CS
  cNMP_binding   4 fkagevifrqGdpadslyivlsGevrvyrlsedgkevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflell 86 
                   ++agevi+++Gd+++++y+++ Ge+ v   +++gk  +l++l++ d+fGe+all + pr+atv+A  +++++ l r+ f++ll
    CCD22431.1 225 YEAGEVIIKEGDTGENFYLIEYGECTV---TKEGKG-LLTTLKDRDYFGEIALLKNVPRQATVTATKRTKVATLGRSGFQRLL 303
                   9**************************...466655.*******************************************997 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.9e-06      0.04     198     261 ..      87     149 ..      83     150 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.9e-06
                 HTSCT.HSHHHHHHHHHHHHHTTS..SEEEEEEGGGEEEEEETTEEEEEEE.SSSS-SBGTTHHHHH CS
        PfkB 198 tgekl.edieealaalhklkakga..ktvvvtlGkeGalvvekdgelkvpavpkvkvvDttGAGDsf 261
                 +++ + ++   ++++l++   k++  +t+++++G eG +++  +++ +v+ +   + v++ GAG sf
  CCD22431.1  87 FNKLDsDSKRLVINCLEE---KHIpkDTIIIKQGDEGDYFY-VVESGNVEYIVDGNTVNSSGAGSSF 149
                 555555777788999988...44446***************.77777777777899********666 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.6     7e+03      11      18 ..      62      69 ..      54      71 .. 0.82
   2 ?    8.5   0.1   0.00035       1.6      17      39 ..     119     140 ..     106     151 .. 0.78
   3 ?    5.0   0.1    0.0043        19       5      47 ..     225     268 ..     222     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.6
                EEEECSSS CS
     Cupin_2 11 apshrHpg 18
                +p h+H+ 
  CCD22431.1 62 TPDHYHEK 69
                58999985 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00035
                 SSEEEEEEEEESEEEEEECTEEE CS
     Cupin_2  17 pgedeffyVleGegeltvdgeev 39 
                 +g   f++V +G +e++vdg++v
  CCD22431.1 119 EGD-YFYVVESGNVEYIVDGNTV 140
                 444.7899999*********965 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0043
                 EETTEEEEEECSSSEEEEEEEEESEEEEEECTE..EEEEETTEEE CS
     Cupin_2   5 lppGesapshrHpgedeffyVleGegeltvdge..eveleaGdsv 47 
                 ++ Ge++  +  +ge  f+ +  Ge ++t +g+   ++l++ d++
  CCD22431.1 225 YEAGEVIIKEGDTGE-NFYLIEYGECTVTKEGKglLTTLKDRDYF 268
                 677887778888999.9999999******8877789999999987 PP

>> Ribosomal_L27  Ribosomal L27 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     9e-05       0.4      11      40 ..      88     117 ..      80     134 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9e-05
  Ribosomal_L27  11 ngrdskgkrlGvKkfggqlvkagnIivrQr 40 
                    n+ ds +krl +   +++++ +++Ii++Q 
     CCD22431.1  88 NKLDSDSKRLVINCLEEKHIPKDTIIIKQG 117
                    778**************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2345.56
//
Query:       CCD22432.1  [L=256]
Description: hypothetical protein NDAI_0A02740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00058   20.0   1.2     0.0023   18.1   1.2    2.0  1  AMPK1_CBM  Glycogen recognition site of AMP-activated protein
     0.0032   18.0   0.4       0.01   16.4   0.4    1.8  1  CBM53      Starch/carbohydrate-binding module (family 53)


Domain annotation for each model (and alignments):
>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.2   2.5e-07    0.0023      12      81 ..      29     114 ..      22     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.5e-07
   AMPK1_CBM  12 kkVyvtGsfnnW.....kkkipLk..ksekdfsvilkLpeGthq..ykFiV.......DgewrvdpdlptatdeeGnlnNvievke 81 
                 +k+ +tG+fnnW     +++++L+   s+k+++v +   +G+ +  +kF++        +ew + p  +t+ d++G +nN+ + ++
  CCD22432.1  29 TKILITGTFNNWqyaedQTEYRLHydVSKKEYTVDVPKVNGKDRlnFKFVIlnannsgYDEWITLPCFETTIDDQGYINNITDCNT 114
                 579*********6666668899996556666666666667888767999995544333369*******************998765 PP

>> CBM53  Starch/carbohydrate-binding module (family 53)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   1.1e-06      0.01       5      70 ..      25      88 ..      21      90 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.1e-06
       CBM53  5 YnkslakevtlhygfngWkssqdvamtksassgdseedwfeatvtvpkea..seldf..vf.dsegeenWD 70
                Yn +   ++++ ++fn+W+  +d +  ++      +    e tv+vpk     +l+f  v+ +  +++ +D
  CCD22432.1 25 YNHQT--KILITGTFNNWQYAEDQTEYRL----HYDVSKKEYTVDVPKVNgkDRLNFkfVIlNA-NNSGYD 88
                66666..6*************99555555....3334455666777775564446651155444.344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1938.11
//
Query:       CCD22433.1  [L=392]
Description: hypothetical protein NDAI_0A02750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-52  178.7  14.9    1.7e-52  178.7  14.9    2.1  2  Zip       ZIP Zinc transporter
    0.00037   21.4   0.3     0.0031   18.4   0.3    2.3  2  DUF4834   Domain of unknown function (DUF4834)


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.9      0.17   1.6e+03     144     163 ..      33      52 ..      17      68 .. 0.44
   2 !  178.7  14.9   1.9e-56   1.7e-52       6     332 ..      82     390 ..      77     391 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.17
         Zip 144 eadtdadskeelrngkqeks 163
                 + + +++ ++ + n +++++
  CCD22433.1  33 NGHIKHTDEHGHGNIHSHSH 52 
                 22222222222222222222 PP

  == domain 2  score: 178.7 bits;  conditional E-value: 1.9e-56
         Zip   6 laiiaililsllgllgpllvpkiskl.....lsklllslllafavGvllgtaflhLlPealealeesqleeehthplagllvllGflllllveklltmi 99 
                  +iia++i+ ll++l++llvp  +++      ++ ll+ l+ f+ G+llg  flhL+Pe + ++++s ++e         +v++Gf+++l+++k+++++
  CCD22433.1  82 NSIIATTIIQLLPCLIVLLVPSLQRInnegtNNNILLTGLSSFGLGTLLGEIFLHLIPELFTNVNNSSMNE------ISTFVFIGFMIFLILDKIIRIL 174
                 689*********************99****999999********************************987......677899**************99 PP

         Zip 100 vekksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkeklaslkvraiilllglilHsf 198
                  ++             +ss  +a+++ +s + +++ +++++        ++skee+ +       +++++  ++++++k+ + ++ ++++++   +H++
  CCD22433.1 175 NGG-------------TSSVDEADAGFMSHSHSHSHSDSRS--------HSSKEEEEE-------ERSQE--SSKEHTKIPKKNMSVYLNVITGLIHNV 243
                 888.............3333333333222222222222222........122222211.......12222..245567788999*************** PP

         Zip 199 idGLAlG..vssssstgislfiAvllHelpeelglgaiLlkaglsrkkavllnllfaltaplGiliGilvrs....isessgaeivsgillalsaGtfl 291
                 +dG+Al   + +ss+ g++++iA+++He+p+elg++aiLl +gl+   a+  +++++l+a+ G+liGi +++    +  ++  + +s+ l++l  G+f+
  CCD22433.1 244 TDGIALTtsFYKSSQVGVITTIAITFHEIPHELGDFAILLANGLTFIEALKTQVVTSLGALTGTLIGIYLNEltttTTIAPSLDTSSSFLMPLMTGGFI 342
                 **********************************************************************99*9999999******************* PP

         Zip 292 YvalvellphEllnek........gssslkqsllqllglllGfalmlll 332
                 Y+a+v l+p  ll+ k        + +++ ++  +l ++l+Gf +m+l+
  CCD22433.1 343 YMATVGLIP-NLLRGKshtkggnvNVDEFFKFGIELSFILVGFSVMSLV 390
                 *********.99999999*****9889*******************986 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.32   2.9e+03      50      85 ..      28      63 ..       7      64 .. 0.61
   2 !   18.4   0.3   3.5e-07    0.0031      11      88 ..     156     228 ..     152     234 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.32
     DUF4834 50 tnsnqqksqsrsetkeegeiieeersekeakrkkiF 85
                t s ++ + +++ ++ +g+i+++++ ++   + k+F
  CCD22433.1 28 TDSASNGHIKHTDEHGHGNIHSHSHAPNAMADNKLF 63
                233333344666677777777777777766666766 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.5e-07
     DUF4834  11 iiailviglsilsvilrtvfglgsrkkssksaqkqfgnstnsnqqksqsrsetkeegeiieeersekeakrkkiFekd 88 
                 +++i ++ + il +i+r + g     +s ++a+++f ++ + ++++s+srs+++ ++e++ee+++e+++++ ki +k+
  CCD22433.1 156 FVFIGFMIFLILDKIIRILNG--GT-SSVDEADAGFMSHSH-SHSHSDSRSHSS-KEEEEEERSQESSKEHTKIPKKN 228
                 77888999999******9944..32.333445555444433.334444444444.44555555556656777987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1600  (0.0892409); expected 358.6 (0.02)
Passed bias filter:                      938  (0.0523175); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 2660.83
//
Query:       CCD22434.1  [L=156]
Description: hypothetical protein NDAI_0A02760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-23   81.6   0.1    5.4e-23   81.2   0.1    1.2  1  MMgT      Membrane magnesium transporter


Domain annotation for each model (and alignments):
>> MMgT  Membrane magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.1     3e-27   5.4e-23       2      98 ..      10     136 ..       9     138 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 3e-27
        MMgT   2 lvglllLlHagYSahehsalls.......askkseqsatsLPlDitletlvslvllilglvl.......................saeeLkpIqlrkaa 70 
                 ++++++LlH+g+S++e++++l+       ++++++ ++ sLP+Di++e++ + +l++l++++                       ++++Lk+I l+k++
  CCD22434.1  10 IIAIFQLLHSGFSSYEFHQILKnisstndHMNNAAIESLSLPKDIVYEAISASILFALSMFFslekpeylpirnidgsekklkplKGDYLKEIALNKST 108
                 6899******************99999887788888999************************************************************ PP

        MMgT  71 gkieregenpfeelesrpgfldirkkrk 98 
                 ++++ +g+ +++e++++p+f++i++kr+
  CCD22434.1 109 NTDNLIGAITTGEISYTPSFINIHEKRR 136
                 ***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1135.10
//
Query:       CCD22435.1  [L=1315]
Description: hypothetical protein NDAI_0A02770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-15   57.2   5.5    2.4e-15   56.4   5.5    1.5  1  RINGv      RING-variant domain
  ------ inclusion threshold ------
       0.93    9.9   6.3        3.2    8.2   6.5    1.8  2  zf-RING_2  Ring finger domain


Domain annotation for each model (and alignments):
>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.4   5.5   2.7e-19   2.4e-15       1      48 []      48     102 ..      48     102 .. 0.91

  Alignments for each domain:
  == domain 1  score: 56.4 bits;  conditional E-value: 2.7e-19
                 ETTTTEE-SSSS--B-SS--STCCCSB-HHHHHHHHHH.......TCT-SB-TTT CS
       RINGv   1 CriCleeeeeseplispCkCrGslklvHesClekWlde.......keantqCeiC 48 
                 Cr+C+ e+++++pl++pCkC+Gs+k++HesCl +W+ +          + +C+iC
  CCD22435.1  48 CRVCRGEATDDNPLFHPCKCKGSIKYIHESCLLEWIASknldiskPGTKVNCDIC 102
                 *************************************97777765556666***9 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.5   0.00036       3.2       2      43 ..      47     102 ..      46     103 .. 0.72
   2 ?   -1.3   0.2      0.31   2.8e+03       2      12 ..      98     108 ..      97     114 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00036
   zf-RING_2   2 eCpICleelssadsvl.llpCgH..v.fhreClerwlrssst..........CPlC 43 
                 +C +C  e ++++ +   ++C+     +h++Cl +w++s++           C +C
  CCD22435.1  47 TCRVCRGEATDDNPLFhPCKCKGsiKyIHESCLLEWIASKNLdiskpgtkvnCDIC 102
                 7****99998877766344786344347********99987666666777777666 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.31
   zf-RING_2   2 eCpICleelss 12 
                 +C IC  +++ 
  CCD22435.1  98 NCDICHYPIHF 108
                 6****888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1305  (0.0727871); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.44
# Mc/sec: 8916.26
//
Query:       CCD22436.1  [L=1073]
Description: hypothetical protein NDAI_0A02780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-37  129.9   2.6    1.2e-37  129.9   2.6    1.8  2  Peptidase_C48  Ulp1 protease family, C-terminal catalytic dom


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.29   5.2e+03      33      73 ..     341     372 ..     325     379 .. 0.64
   2 !  129.9   2.6   6.7e-42   1.2e-37       1     196 [.     421     696 ..     421     714 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.29
                    -THHHHHHC..........SS.......T.CHCHHHCTTCCC CS
  Peptidase_C48  33 ntffvskLtkavkdfkknkskkkfkeskk.kdlyngvrrwtr 73 
                    ++ f+s+ +          +  k+++s++ + l + +r+  +
     CCD22436.1 341 SSSFYSNSS----------NSHKEEWSSGlQSLRKSTRKTKN 372
                    566777777..........56677888875554444444333 PP

  == domain 2  score: 129.9 bits;  conditional E-value: 6.7e-42
                    ---BHHHHHHHHHHHHHHHHH.CCCTCCCEEE--THHHHHHC..........SS.......TCHCHHHCTTCCCCCS..-GGG-SEEEEEEEC.TT CS
  Peptidase_C48   1 ewlndtvidfylkllaerles.seskaervhflntffvskLtkavkdfkknkskkkfkeskkkdlyngvrrwtrkvnkedlfdkdiiyiPinedgk 95 
                    +w+ndt++df++k+  e++ +  + ++++v ++++ff++kL        ++          ++ +y +v++w  ++    lf+k+++++Pin  ++
     CCD22436.1 421 DWINDTILDFFTKYFIEQSIKaGTLNKNDVSIMSSFFYTKLI-------SD----------PSNYYGNVKKWVSNS---KLFEKKFVVVPINM-NY 495
                    6********************99*******************.......33..........388***********9...**************.** PP

                    EEEEEEEETCCC.................................................................................... CS
  Peptidase_C48  96 HWvlliinlpdk.................................................................................... 107
                    HW+++ii++ d+                                                                                    
     CCD22436.1 496 HWFGCIITNLDHllryykykdekgkeahrgdtdvnipgnekcktvkdtvssdsvtteqgdnapdttpresvsknqnepeessnisnnskleetnte 591
                    ************************************************************************************************ PP

                    ..................EEEEE-TTS-SSH.HHHHHHHHHHHHHHHHHCCCCCSTT-.GGGEEEEEEE-----SSCCCHHHHHHHHHHHHHCTHH CS
  Peptidase_C48 108 ..................tililDSlislhtvkkenrpinnlkpyLleealkkkqkqldltpfeierltkvpqqknsgDCGiyvlkfiellaegap 185
                                      +il++DSl+++ht     r i+++k++++ +a++k++  ld+ +++++++  vpqq+n++DCG++v+ +++ ++e+++
     CCD22436.1 592 eeklntiqedisedmpivQILTYDSLRQSHT-----REIDAIKEFIIGYAEDKYNITLDKANIKMKTC-LVPQQPNMSDCGVHVILNTKKFFENPT 681
                    *******************************.....********************************.*************************** PP

                    CHHHHH....SS.HH CS
  Peptidase_C48 186 qessvt....ltekd 196
                    ++ s +    l++k+
     CCD22436.1 682 DTWSMWrtskLRNKN 696
                    998887777777555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1497  (0.083496); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.23s 00:00:01.03 Elapsed: 00:00:00.42
# Mc/sec: 7696.06
//
Query:       CCD22437.1  [L=1230]
Description: hypothetical protein NDAI_0A02790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-22   78.3   0.0    3.2e-10   39.9   0.0    2.8  2  EF-hand_4   Cytoskeletal-regulatory complex EF hand
    1.9e-06   28.2   0.0     0.0053   17.2   0.2    3.7  3  EF-hand_7   EF-hand domain pair
    5.9e-06   25.5   0.0       0.15   11.7   0.0    3.7  3  EF-hand_1   EF hand
      1e-05   25.0   0.0        3.8    7.7   0.0    4.3  4  EF-hand_6   EF-hand domain
    3.5e-05   24.1  61.1    0.00043   20.6  21.3    8.8  7  DUF1720     Domain of unknown function (DUF1720)
     0.0017   18.2   6.9     0.0017   18.2   6.9    3.1  3  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
  ------ inclusion threshold ------
      0.062   13.3   0.1       0.17   11.9   0.1    1.7  1  DUF2701     Protein of unknown function (DUF2701)
       0.13   12.4   0.1        1.9    8.6   0.0    2.5  2  DUF826      Protein of unknown function (DUF826)
          4    7.6  11.1       0.29   11.3   0.1    3.7  3  FAM150      FAM150 family


Domain annotation for each model (and alignments):
>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   4.9e-12   9.8e-09      11      79 ..     322     391 ..     313     404 .. 0.86
   2 !   39.9   0.0   1.6e-13   3.2e-10       6      99 ..     692     784 ..     688     789 .. 0.90

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 4.9e-12
   EF-hand_4  11 kyweifsg.lkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvnge 79 
                 k+  +f++ +k+ +n+++g     +l +s l+  +l++iw+l+d  + g+l f ef++am+l+ +++ g+
  CCD22437.1 322 KFEILFRSvVKNGSNTVSGIDCRKILMKSGLQPTQLARIWSLCDTSKAGELLFPEFALAMHLVNEVLQGD 391
                 55556765268999*************************************************9999875 PP

  == domain 2  score: 39.9 bits;  conditional E-value: 1.6e-13
   EF-hand_4   6 eleikkyweifsglkp.ednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpeskahl 99 
                   e+  y++if + ++ +  +l +  +  ++++s l+   le+iw+l+d d++g+l+ + +  +  ++f  +ng  kd+P++lP+ l+p+s + l
  CCD22437.1 692 PEEKSLYYKIFATYDSdKRGYLDSPTAVEIFRKSGLSRGDLEQIWNLCDRDNNGQLNKQSLPSVCYFVFGKLNG--KDLPNKLPNSLIPSSAKIL 784
                 568889******9976156799999***********************************************99..59***********997755 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0      0.01        20       5      70 ..     324     381 ..     320     382 .. 0.73
   2 !   17.2   0.2   2.7e-06    0.0053       3      62 ..     696     748 ..     694     750 .. 0.82
   3 !    7.9   0.0    0.0021       4.2       3      28 ..     731     756 ..     729     772 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 +  F++  ++g++ ++  + +++l         +s l +++l +++   Dt+k G++ f EF  ++
  CCD22437.1 324 EILFRSVVKNGSNTVSGIDCRKILM--------KSGLQPTQLARIWSLCDTSKAGELLFPEFALAM 381
                 5567777777788877777665555........3444566788999999*************8665 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.7e-06
   EF-hand_7   3 klkea.FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvis 62 
                  l+++ F  +D+d++gyld     +++r        +s ls+  le++++  D d++G+++
  CCD22437.1 696 SLYYKiFATYDSDKRGYLDSPTAVEIFR--------KSGLSRGDLEQIWNLCDRDNNGQLN 748
                 567777*************999333666........56667889**************986 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0021
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrll 28 
                 +l++++++ D+d++g l+k+ l +++
  CCD22437.1 731 DLEQIWNLCDRDNNGQLNKQSLPSVC 756
                 58899***************999865 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.075   1.5e+02       2      27 ..     357     382 ..     356     384 .. 0.90
   2 !    6.8   0.0    0.0027       5.3       4      19 ..     700     715 ..     698     724 .. 0.86
   3 !   11.7   0.0   7.3e-05      0.15       1      20 [.     731     750 ..     731     756 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.075
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l +i+++ D+ + G + f Ef  ++ 
  CCD22437.1 357 LARIWSLCDTSKAGELLFPEFALAMH 382
                 5689*****************99996 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0027
                 HHHHHHTTTSSSEEEH CS
   EF-hand_1   4 eiFrefDkDgdGkIdf 19 
                 +iF+ +D D+ G++d 
  CCD22437.1 700 KIFATYDSDKRGYLDS 715
                 89************95 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 7.3e-05
                 HHHHHHHHHTTTSSSEEEHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfe 20 
                 +l++i+++ D+D++G+++++
  CCD22437.1 731 DLEQIWNLCDRDNNGQLNKQ 750
                 5899*************987 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.036        72       5      28 ..     326     349 ..     322     352 .. 0.82
   2 ?   -1.0   0.0       1.1   2.2e+03       3      27 ..     358     382 ..     356     385 .. 0.86
   3 !    7.7   0.0    0.0019       3.8       3      27 ..     699     723 ..     697     728 .. 0.81
   4 !    7.5   0.0    0.0021       4.3       2      22 ..     732     752 ..     731     756 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.036
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalrk 28 
                 +F+   k+g+++++  ++rk+l k
  CCD22437.1 326 LFRSVVKNGSNTVSGIDCRKILMK 349
                 6777789**************984 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                  +++ l D+++ G++ + E+  a+ 
  CCD22437.1 358 ARIWSLCDTSKAGELLFPEFALAMH 382
                 578999*********9999998886 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0019
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                 +++F  +D d+ G++d    + ++r
  CCD22437.1 699 YKIFATYDSDKRGYLDSPTAVEIFR 723
                 689************9866666666 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0021
   EF-hand_6   2 lreaFklfDkdgdGkidaeEl 22 
                 l+++++l D+d++G+++++ l
  CCD22437.1 732 LEQIWNLCDRDNNGQLNKQSL 752
                 7899************98765 PP

>> DUF1720  Domain of unknown function (DUF1720)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -15.2  23.5         9   1.8e+04       8      65 ..       5      60 ..       2      68 .. 0.38
   2 ?   -6.2  23.5         9   1.8e+04       8      69 ..      62     138 ..      49     149 .. 0.53
   3 !    7.4  28.6     0.003         6       2      75 .]     177     292 ..     153     305 .. 0.85
   4 !   20.6  21.3   2.2e-07   0.00043      11      75 .]     453     529 ..     443     529 .. 0.85
   5 !   10.6  30.4   0.00029      0.58       2      74 ..     492     582 ..     491     583 .. 0.75
   6 !   18.9  31.8   7.7e-07    0.0015       5      75 .]     571     647 ..     567     647 .. 0.84
   7 !   14.2  12.1   2.3e-05     0.045       5      60 ..     624     666 ..     621     686 .. 0.50

  Alignments for each domain:
  == domain 1  score: -15.2 bits;  conditional E-value: 9
     DUF1720  8 fqppqqqqpqqqqplqpqpTGfmpqq..qtgq.glqpqpTGggqfapglqpqqTGf.qeqaq 65
                 q++++++++qqq++ pq  G  ++   +t+q      +TG +++ap      T   q+q+q
  CCD22437.1  5 QQSQNNFTYPQQQQVAPQEQGPSNMSfwSTQQdTNTNATTG-NYSAP-----ATHAnQNQNQ 60
                34444444444445555555543322002333334444456.44444.....2222222222 PP

  == domain 2  score: -6.2 bits;  conditional E-value: 9
     DUF1720   8 fqppqqqqpqqq............qplqpqpTGfmpqqqtgq..glqpqpTG.ggqfapglqp.qqTGfqeqaqqglq 69 
                  +++q+q + qq            + ++  pT + +    ++  +lqp +TG  +   p + p  +T   +++ +++q
  CCD22437.1  62 QNQNQNQNQNQQymygnssntnmaNLMTTHPTSYINSSYLTSntNLQPSQTGlYNNNGP-IPPhFPTTSTNSNSPPVQ 138
                 22222222222233444455555566677777777655544477888888887766666.333123333344444444 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.003
     DUF1720   2 qpqqtGfqppqqqqpqqq........................qplqpqpTGfmpqqqtgq...........glqpqpTG.ggqfap..glqpqqTGf.. 60 
                 qpq+  + +p+ + +q++                        qp+ +q TG++p+++ +            ++++ p G ++ +++   l pqqTGf  
  CCD22437.1 177 QPQSANMSQPMATSQQHNdvptsnfshsninvnsnvgqnqtlQPMRQQLTGYYPNPSDQHlnvvpasnytpQIEATPIGtNNDSTQqrRLEPQQTGFym 275
                 6666666666666666666667777777777777777777799************99988*******88777777777*988888889**********9 PP

     DUF1720  61 ..qeqaqqglqPqaTGf 75 
                   ++ + ++l+P+aTGf
  CCD22437.1 276 knNQFPSEPLKPNATGF 292
                 977778899*******8 PP

  == domain 4  score: 20.6 bits;  conditional E-value: 2.2e-07
     DUF1720  11 pqqqqpqqq...qplqpqpTGfmpqqqtgqglqpqpTGggqfapglqpqqTGf................qeqaqqglqPqaTGf 75 
                 +++++   +   + +qpq TGf p +++gq+l+ +pTG   +ap + pq+TG+                +++ ++++q+q TG+
  CCD22437.1 453 QSPNT---TaatGHIQPQVTGFIPDTSFGQPLNLHPTG---MAP-MFPQSTGYtppiphttaptnmpdgSNAVPPPIQQQGTGY 529
                 22233...244479************************...999.*******************999999999999999***97 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00029
     DUF1720   2 qpqqtGfqppqqqqpqqq..........qplqpqpTGfmpqqqtgqglqpqpTG.ggqfap...........glqpqqTGf...qeqaqqglqP..qaT 73 
                  pq+tG+ pp + +++++          +p+q+q TG+         + pq+TG  g + +            lqpq+TG+   +++ qqg +P  ++T
  CCD22437.1 492 FPQSTGYTPPIPHTTAPTnmpdgsnavpPPIQQQGTGYH--------MPPQMTGnDG-SNGlqnvppntlsgTLQPQSTGYnttNNTTQQGYMPpaNST 581
                 69***********99999889999999889999999986........4566665222.222345666777779********999777777777745558 PP

     DUF1720  74 G 74 
                 G
  CCD22437.1 582 G 582
                 7 PP

  == domain 6  score: 18.9 bits;  conditional E-value: 7.7e-07
     DUF1720   5 qtGfqppqqqqpqqq....qplqpqpTGfmpqqqtgqglqpqpTG.ggqfapglqpqqTGf..qeqaqqglqPqaTGf 75 
                 q+G++pp + +   +    qplq+ +TGf+pq+++g++l  q TG + ++++  qpq      +++++++lqPq+TG+
  CCD22437.1 571 QQGYMPPANSTGDITqagqQPLQQNATGFVPQTSFGMPLSFQYTGgPLTIQS-QQPQINSInyNQTGNGPLQPQPTGY 647
                 68999998876655567889*************************5555555.999998888888888*********8 PP

  == domain 7  score: 14.2 bits;  conditional E-value: 2.3e-05
     DUF1720   5 qtGfqppqqqqpqqqqplqpqpTGfmpqqqtgq..glqpqpTGggqfapglqpqqTGf 60 
                 q   ++ + +q+++  plqpqpTG++p+  ++   +l +q+TG              f
  CCD22437.1 624 QPQINSINYNQTGNG-PLQPQPTGYLPPSNFNPtvPLVAQKTG--------------F 666
                 222222222222333.555555555555555445555555555..............4 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   1.4       0.6   1.2e+03     166     179 ..      57      70 ..       6      94 .. 0.49
   2 ?   -5.5   4.8         9   1.8e+04      95     107 ..     863     875 ..     822    1017 .. 0.62
   3 !   18.2   6.9   8.4e-07    0.0017      69     174 ..    1103    1226 ..    1058    1230 .] 0.52

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.6
                 -------------- CS
  Cwf_Cwc_15 166 rkerekaeeeeker 179
                  +++++++++++++
  CCD22437.1  57 NQNQNQNQNQNQNQ 70 
                 11111111111111 PP

  == domain 2  score: -5.5 bits;  conditional E-value: 9
                 ------------- CS
  Cwf_Cwc_15  95 eeakrrkeellee 107
                 e++ r+k ++l+ 
  CCD22437.1 863 EKEVRQKIDILQR 875
                 2222222223322 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 8.4e-07
                  HH-------------------------------------..-----------------..................................----- CS
  Cwf_Cwc_15   69 krkkaeleaeeeeekekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeee..................................eesdd 131 
                  +                   +++++  ++k +k ++ e+ + id + ++s +  + ++                                  +    
  CCD22437.1 1103 T-------------------KDKNAMFKEKMKK-RMAEKLSRIDVNGRRSPDMVNAKNtllnrdrdqtgpttavpttitspfednithlsdnK---V 1176
                  1...................1111111111111.22333234444444433333332244444444444555556678888777777554441...0 PP

                  .......------------------------------------------- CS
  Cwf_Cwc_15  132 .......dsdsdsdddddedetaeLlrELekikreraeekerkerekaee 174 
                         + + +  ddd ++e+++Ll  L+kik  r++eke+k++e +++
  CCD22437.1 1177 vndsavpKGNFSGTDDDVDEEEKKLLEQLQKIKLRRKAEKEKKAAELNKT 1226
                  444456555666677777999**********************9997665 PP

>> DUF2701  Protein of unknown function (DUF2701)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   8.7e-05      0.17      25      58 ..     785     818 ..     779     821 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.7e-05
     DUF2701  25 kdalnsiklkilnattrrsFaqLDtvYYTdddev 58 
                  ++ n++k+ i n t  r F++ D + Y +dd+v
  CCD22437.1 785 DSVKNQLKTNINNNTGSRTFTKNDALNYKNDDSV 818
                 57789***************************98 PP

>> DUF826  Protein of unknown function (DUF826)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00096       1.9      11      57 ..     382     429 ..     379     437 .. 0.89
   2 ?    0.3   0.0      0.37   7.4e+02      20      40 ..     785     805 ..     780     810 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00096
      DUF826  11 dlVKeaLrSeeVrkalKaklrkdlesqiDaeVDavLaeL.lGvaaasa 57 
                  lV e+L  + +   l +k ++++es iDa   a+ ++L  G  a+ a
  CCD22437.1 382 HLVNEVLQGDSIPFELDTKTKNEVESFIDAINLAIVDDLdTGTNAGQA 429
                 589***********************************9667777665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.37
      DUF826  20 eeVrkalKaklrkdlesqiDa 40 
                 + V++ lK+ + ++  s+  +
  CCD22437.1 785 DSVKNQLKTNINNNTGSRTFT 805
                 568888888888887777655 PP

>> FAM150  FAM150 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   1.8       1.2   2.3e+03      31      47 ..      57      73 ..      33      93 .. 0.50
   2 ?   11.3   0.1   0.00014      0.29      36     116 ..     848     930 ..     819     937 .. 0.73
   3 ?    0.8   0.3      0.27   5.3e+02      13      63 ..    1067    1124 ..    1062    1130 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.2
      FAM150 31 llskkqdysleekekkd 47
                  +++q+ + +++++++
  CCD22437.1 57 NQNQNQNQNQNQNQNQQ 73
                11112222222222222 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00014
      FAM150  36 qdysleekekkdykksqdeqrvieivpRDlrmkekFlkhlt..GplkfspkCskhfyrlYhntrDCtiPayykRcarlLtrla 116
                 + +s + ++k++  ++++  + i+i+ R +  kek l       p+k   k + +++ +++  r        kR++ lLtrl 
  CCD22437.1 848 TTTSPQATNKTNERSEKEVRQKIDILQRQIAEKEKILSRPIpeDPIKSIEKLKAEIKNVFNSSRANNQNDLEKRFQYLLTRLP 930
                 23333333443334444444557**************9765579*************************************95 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.27
      FAM150   13 ikevkksekeesrrstkqllskkq.......dysleekekkdykksqdeqrvieivpR 63  
                  +ke+++++++es+ +++q  s ++       d+  ++k+k+++ k++ ++r+ e ++R
  CCD22437.1 1067 LKELRQTRTNESTATVVQERSPSTlltstegDIPRDTKDKNAMFKEKMKKRMAEKLSR 1124
                  5666666666666665555544444445556999999999999999999988887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2038  (0.113671); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.03u 0.32s 00:00:01.35 Elapsed: 00:00:00.54
# Mc/sec: 6901.22
//
Query:       CCD22438.1  [L=169]
Description: hypothetical protein NDAI_0A02810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-20   73.1   0.0    2.4e-20   72.1   0.0    1.5  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
    4.9e-06   26.6   0.1    1.4e-05   25.1   0.0    1.8  2  RRM_7     RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   2.7e-24   2.4e-20       1      70 []      36     106 ..      36     106 .. 0.99

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 2.7e-24
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +++g+Lp+d+te ++ ++Fs+fG  ++i lvrd + g skgfa+ ++e++++   A+++lng+kl+g++++
  CCD22438.1  36 IYIGGLPRDLTEADILTVFSQFGIPVDIFLVRDhQSGESKGFAYLKYEDQRSTILAVDNLNGTKLNGNTIH 106
                 8********************************************************************96 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.6e-09   1.4e-05       4      68 ..      36      93 ..      33     113 .. 0.81
   2 ?   -3.2   0.0       1.1   9.5e+03      71      87 ..     139     155 ..     127     158 .. 0.61

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.6e-09
       RRM_7  4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLle 68
                +++GGlP D+te+++ + f++fg + vd      +++ +       kg+++l +ed++s    ++
  CCD22438.1 36 IYIGGLPRDLTEADILTVFSQFG-IPVDIFLVRDHQSGE------SKGFAYLKYEDQRSTILAVD 93
                89********************9.456766665554443......37**********99766555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
       RRM_7  71 teeeeelylklssrrlk 87 
                 t+ +++  l ++s+++k
  CCD22438.1 139 TKTKSNKLLPIQSKKIK 155
                 44455666777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1340.34
//
Query:       CCD22439.1  [L=482]
Description: hypothetical protein NDAI_0A02820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-76  256.5   3.9    1.5e-76  256.5   3.9    2.5  2  DnaJ-X      X-domain of DnaJ-containing
    6.6e-25   87.0   1.0    2.2e-24   85.4   1.0    2.0  1  DnaJ        DnaJ domain
  ------ inclusion threshold ------
      0.025   13.8   1.9      0.038   13.2   1.9    1.3  1  Zip         ZIP Zinc transporter
        0.3    9.9  12.9        1.9    7.2   0.1    2.2  2  Apt1        Golgi-body localisation protein domain


Domain annotation for each model (and alignments):
>> DnaJ-X  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.2  12.7         4   1.8e+04     105     131 ..     111     137 ..      48     194 .. 0.72
   2 !  256.5   3.9   3.4e-80   1.5e-76       1     211 []     192     409 ..     192     409 .. 0.98

  Alignments for each domain:
  == domain 1  score: -8.2 bits;  conditional E-value: 4
      DnaJ-X 105 stmeelakeqekkkeeekeeeeeteee 131
                 +  eel+ e+e++k +eke+e+e+++e
  CCD22439.1 111 QKTEELNAEDEAEKAKEKEKEKENDNE 137
                 223333333333333333333333333 PP

  == domain 2  score: 256.5 bits;  conditional E-value: 3.4e-80
      DnaJ-X   1 qeereeeLakkLrekLspyveadkke.etesFkkkleeeaesLkmesFGleilhtIGkiYknkAksflkskqkflglgglfssvkekgrvvkdtfktvs 98 
                 +++ +e+L+++L+e+Ls+++e+ +++ +++sF++k+eeea+ LkmesFGl+ilh+IG+iY++kAk+fl+s q+++g+gg+f+ vk+kg+v++dt++tvs
  CCD22439.1 192 KKKSIEKLSNTLIERLSILTESVYDDaCKQSFTRKFEEEANLLKMESFGLDILHAIGEIYEEKAKIFLAS-QNLFGFGGMFHTVKAKGGVFMDTLRTVS 289
                 6899********************999*******************************************.**************************** PP

      DnaJ-X  99 saldaqstmeelakeqekk.......keeekeeeeeteeelaemekkllgkvLaaawkgskfeIestlrevcdkvLkDksvdketrlkRAeaLkilGei 190
                 +a+daq+tm+el+k++ +        +++ +e+ ++t+e+la++e+ l+gkvLaaaw+gskfeI+stlr+vcd vL Dksv+ et+++RAe+L++lG++
  CCD22439.1 290 AAIDAQNTMKELEKMKSATennepllDKDGQEQIKPTPEQLAQQEQLLMGKVLAAAWHGSKFEITSTLRSVCDTVLSDKSVPHETLIRRAESLELLGKV 388
                 ***********99999888889****999********************************************************************** PP

      DnaJ-X 191 fqkakrtekeeeearvfeelv 211
                 fq+  rt+ e+eea++feelv
  CCD22439.1 389 FQRSFRTKVEQEEAQIFEELV 409
                 *******************98 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   1.0   4.8e-28   2.2e-24       2      63 .]       7      68 ..       6      68 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 4.8e-28
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                yY++Lg++++a++ eIkkaYrk+++k HPDknp+dp+a+e+F+ i+eAy+vLsd++ R +YD
  CCD22439.1  7 YYDLLGIEPSATQGEIKKAYRKKSIKEHPDKNPNDPQATERFQAISEAYQVLSDESLRLKYD 68
                9************************************************************9 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.9   8.5e-06     0.038     103     182 ..     122     199 ..      85     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.5e-06
         Zip 103 ksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedkeklasl 182
                  +++kek+++k+++++ +++ ++s  +d +++s ++++  a ++t+ +++ +  ++k++ +e e+eq++  e+k+++++l
  CCD22439.1 122 AEKAKEKEKEKENDNEGTKNLQHSQGADRLSSSNKNFNPTATTKTSSSKEDKIPKKKTKLEEFEEEQNE--EKKKSIEKL 199
                 6789999999*******************************************************9966..444444333 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   9.7    0.0046        21     313     393 ..     115     192 ..      82     238 .. 0.45
   2 ?    7.2   0.1   0.00043       1.9      96     146 ..     287     337 ..     274     369 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.0046
        Apt1 313 s.seeddesdeesessssssssssssassssssssrssslelrlkptsstssssssessssssskk.rsseesslessaserv 393
                 + + ed+ ++ +++++++++ ++ +++ ++s+  +r ss++++ +pt++t++sss+   + ++ kk ++ e  + e++++e+ 
  CCD22439.1 115 ElNAEDEAEKAKEKEKEKENDNEGTKNLQHSQGADRLSSSNKNFNPTATTKTSSSK---EDKIPKKkTKLE--EFEEEQNEEK 192
                 13222222222222222222333444444444444444444444444333333222...222222202222..1121111111 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00043
        Apt1  96 lpemvkklqerirqleeikehfqieskyldkegwedrlklekelaeceeeL 146
                 + +  ++ q+ +++le++k+  + ++ +ldk+g+e+ +   ++la+ e+ L
  CCD22439.1 287 TVSAAIDAQNTMKELEKMKSATENNEPLLDKDGQEQIKPTPEQLAQQEQLL 337
                 55667889****************************999999999988544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2684  (0.149702); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 3345.19
//
Query:       CCD22440.1  [L=473]
Description: hypothetical protein NDAI_0A02830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-59  199.0   0.7    7.4e-59  199.0   0.7    2.6  3  ANTH             ANTH domain
    2.4e-06   27.6   4.2    2.8e-06   27.4   0.3    2.6  2  ENTH             ENTH domain
  ------ inclusion threshold ------
      0.045   13.7   1.8        2.8    7.9   0.1    2.9  3  TBPIP            TBPIP/Hop2 winged helix domain
       0.12   11.8   1.4       0.22   11.0   1.4    1.4  1  ATP-sulfurylase  ATP-sulfurylase


Domain annotation for each model (and alignments):
>> ANTH  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.0   0.7   1.6e-62   7.4e-59       2     276 ..       4     281 ..       3     282 .. 0.90
   2 ?   -0.5   0.8      0.11     5e+02     137     172 ..     306     341 ..     287     353 .. 0.64
   3 ?   -5.9   5.7         4   1.8e+04     130     170 ..     407     447 ..     397     462 .. 0.49

  Alignments for each domain:
  == domain 1  score: 199.0 bits;  conditional E-value: 1.6e-62
                 HHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS.SHHHHHHHHHHHHHHHHHS-CHHHHHHHHTT-----TT---TSHHHSTHH CS
        ANTH   2 levavvKAtshdevPpkekhvreilvltssrekvaalvwalsrrlkltrnwvvalKaLilvHklLreGhpsveqellsarrrisellnlssfddsssks 100
                 +++ v++At+++++Ppk+k+v  il++ts++ +++++v+ l +r+++ + w v +K+Li+vH ++  G+p+v+ +++s++ ++ ++ ++ +  +s+  s
  CCD22440.1   4 YKKLVKGATKIKMAPPKQKYVDPILLGTSNNIEFQQIVSELTSRINNCNIWSVIYKTLIVVHLMISIGEPNVTLRYFSKNLNFFDIKRILN--SSKWSS 100
                 7899***************************************************************************************..667788 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHSS-...........CCCS--S...........TTSHCC...C--HHHHHHHHHHHHHHHHHHHTT---GGG--.S CS
        ANTH 101 wdysafiraYakyLderlefhrklkvdk........gelereeeg......slvavedpner..ktlsmeklldkieklqklldrllkckptgnals.n 182
                 +d +a+ r Y++y++ r++ + k k d          +      +      +   ++ ++ r  + +++   ld +e++  ++++l ++k+++ +l+ n
  CCD22440.1 101 NDLKALER-YDRYIKIRCREFGKFKIDFvkdsfsfkSK------NnkenngNNDDNDYDD-RrrLHSDIHLDLDIVESIIIIIRSLVENKYSVYDLQnN 191
                 99999988.*****************966655554422......1222232222222222.24699999999************************989 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--GGG.S--GGGS-CHHCCCCCHHHH CS
        ANTH 183 evilaalvllvkeslklYkaineglinLlekffelskheadkaldiykrfskqfeelkeFyevckslgilrsleiPelekippnllealeeflr 276
                  ++l+a++llv+++l+lY+++neg+inLle+ff+l++ ea ++ld+yk f++++e+++++++++k +g+     iP +++i+++l+++le++l+
  CCD22440.1 192 PLLLYAFKLLVQDLLALYNTLNEGVINLLESFFDLDRAEAGETLDLYKDFVDLTEDVVNYLKTGKAVGLN----IPVIKHITTKLIRSLEDHLN 281
                 9********************************************************************9....******************98 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.11
                 S.....TTSHCC.C--HHHHHHHHHHHHHHHHHHHT CS
        ANTH 137 gslvavedpnerktlsmeklldkieklqklldrllk 172
                  s v++++ n+ + +  e+ l++i++ +++l++ l 
  CCD22440.1 306 VSQVSQHSTNNTTRSAAEQRLEQIREQKRILEQQLH 341
                 233333333333789999999999999999988886 PP

  == domain 3  score: -5.9 bits;  conditional E-value: 4
                 .CCCS--S.....TTSHCC.C--HHHHHHHHHHHHHHHHHH CS
        ANTH 130 elereeegslvavedpnerktlsmeklldkieklqklldrl 170
                 ++e ++++ +va  + n  +++  + +++++++ q++l   
  CCD22440.1 407 TFETVQQQPIVATPTNNPFLMHHEQLQQQQLQEQQQQLLLQ 447
                 56666666544444444334444444455555555555332 PP

>> ENTH  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.3   6.2e-10   2.8e-06       2      81 ..       2      79 ..       1     108 [. 0.88
   2 ?    0.4   0.2      0.14   6.3e+02      70      91 ..     265     286 ..     244     315 .. 0.56

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 6.2e-10
                -HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSHHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHS-HHHHHHH CS
        ENTH  2 seteskvreatnndpwGpsnkllteiarltyskkelseiisvitkrLqnnkgkewrsvlKaLtlieYLlknGseqvidwl 81
                +++++ v+ at+ +   p++k  + i   t ++ e+++i+s +t r+  n+ + w +++K+L++++ ++  G+ +v    
  CCD22440.1  2 TSYKKLVKGATKIKMAPPKQKYVDPILLGTSNNIEFQQIVSELTSRI--NNCNIWSVIYKTLIVVHLMISIGEPNVTLRY 79
                78999******************************************..9999*****************9999876544 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.14
                 HHHS-HHHHHHHHHTHHHHHGG CS
        ENTH  70 lknGseqvidwlkenisiiktl 91 
                 +k+  ++ i+ l++++++i+  
  CCD22440.1 265 IKHITTKLIRSLEDHLNTISDD 286
                 3444445556666666666655 PP

>> TBPIP  TBPIP/Hop2 winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1   0.00063       2.8      36      60 ..     103     127 ..      88     129 .. 0.90
   2 ?   -3.2   0.0       1.9   8.5e+03      20      28 ..     246     254 ..     245     259 .. 0.76
   3 ?    4.0   0.1     0.011        49      19      50 ..     306     337 ..     303     340 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00063
       TBPIP  36 qkaLdeLvdegkiieKeyGKqkiYl 60 
                  kaL+      ki ++e+GK ki +
  CCD22440.1 103 LKALERYDRYIKIRCREFGKFKIDF 127
                 5999999***************955 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.9
       TBPIP  20 qdvvanlqk 28 
                 +dvv++l+ 
  CCD22440.1 246 EDVVNYLKT 254
                 799999986 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.011
       TBPIP  19 vqdvvanlqkklgKtavqkaLdeLvdegkiie 50 
                 v+ v++   ++ +  a+ + L++ +++++i e
  CCD22440.1 306 VSQVSQHSTNNTTRSAAEQRLEQIREQKRILE 337
                 567888888899******************76 PP

>> ATP-sulfurylase  ATP-sulfurylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.4     5e-05      0.22      13      61 ..     407     455 ..     396     471 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5e-05
                      HHHHTT-SSEEEEEESS---HHHHHHHHHHHHHTSEEEEEEEB-SB-ST CS
  ATP-sulfurylase  13 efkekgwdkVvAfqtrnplHraHeellkraleeeadglllhplvgptkp 61 
                      +f+  + + +vA  t np+   He l+++ l+e+ + lll+   +++++
       CCD22440.1 407 TFETVQQQPIVATPTNNPFLMHHEQLQQQQLQEQQQQLLLQQQQQQQQQ 455
                      355566677*********9999**********95555999866555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3242  (0.180824); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.41
# Mc/sec: 3456.42
//
Query:       CCD22441.1  [L=395]
Description: hypothetical protein NDAI_0A02840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-115  385.5   5.3   2.5e-115  384.8   5.3    1.3  1  D123      D123


Domain annotation for each model (and alignments):
>> D123  D123
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.8   5.3  1.4e-119  2.5e-115       1     305 [.      55     366 ..      55     367 .. 0.95

  Alignments for each domain:
  == domain 1  score: 384.8 bits;  conditional E-value: 1.4e-119
                 HHHHHGGGS--EEEE.S--HHHHHHHCSSSEE-----...............------------------.........--...HHHHHHHHHHHHHTT CS
        D123   1 Wypkfrkltikskii.plpeefleYLeedgivlpeeseeekesaeesesdsdseesdsedeeeeeeeeee.........pseefpeleekikeaieelg 89 
                 Wyp+f+++ +k+ ii plp+ef++YLe+dgi+lp+e+++++ +++  ++d+++e+sd+e++  ++e+++e         p  +fpe+++k+k+ai+el 
  CCD22441.1  55 WYPLFKSHIPKAMIIkPLPNEFIQYLEQDGIILPNEDSSTSFYTQGITNDDENEYSDWEEQAANDESSSEqeqenervdPLVHFPEFHNKLKSAIDEL- 152
                 ****************************************999999999999****999988877776657788999999******************. PP

                 S-EEEE-SS---GGGCCTSSSSSS-BSSHHHHHHHHHT-HHHHHHHHHTTTTBT.....--TTS-S-TT----EEEEE-----GGGEEEEEEETTEEEE CS
        D123  90 gavfpKlnwsaPkDAawilaenslkctsvndvylLLksSdfiahDLehafdece.....eeeeesekeeieleLvLrkwfdlnpslefRcFVkdrkLia 183
                 g+v+pKlnwsaP+DA+wil++n++kc++vn++ylLL++S++i+hDL++afdec+     eeee++++++ e+eL+Lrkwfd+np+lefR+FV++ k+i+
  CCD22441.1 153 GSVTPKLNWSAPRDATWILPNNTMKCNEVNELYLLLNASNYIMHDLQNAFDECTgkeeeEEEERRKSNTPEFELILRKWFDINPALEFRVFVQNGKIIG 251
                 67***************************************************87766555555666669***************************** PP

                 EEESSSS--THHHHTHHHHHHHHHHHHHT..TTTSSSSSEEEEEEEETT..EEEEEEEEESSTTS--TTS-HHHHH.....HS-TTSSS-EEE----XX CS
        D123 184 isqRdlnyydfleelkeelkekieeffeeklkekfpdesyvfDvyvpkkldkvkliDinpfaertdslLFtweeLleeeeeeeeeeeeepelrlvesek 282
                 isqRdlnyyd+l++l++++k+ ++ f+++++ +kfpd+++v+Dvy+p++++k++liDinpfa++td+lLF+w+eL      e++ +++++elrlv +e+
  CCD22441.1 252 ISQRDLNYYDYLDALSDQFKDMLDGFVKDVIVPKFPDKDFVVDVYIPRPFNKIFLIDINPFARKTDPLLFSWNELI-----ESSGDKKDYELRLV-KEN 344
                 ****************************************************************************.....899999********.899 PP

                 XX..XXXXXXXXXXXXXXXXXXX CS
        D123 283 dveanfaskeysankvPkdvvda 305
                 +v  +f ske+s+n+vPkd++da
  CCD22441.1 345 NVG-RFVSKEHSENQVPKDLIDA 366
                 998.7****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1295  (0.0722293); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3155.08
//
Query:       CCD22442.1  [L=314]
Description: hypothetical protein NDAI_0A02850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-16   60.8   2.9    4.2e-16   59.5   2.9    1.7  1  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   2.9   2.3e-20   4.2e-16       2      66 .]      94     157 ..      93     157 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 2.3e-20
                      -HHHHHHHHHHHHHHHHHGGGS-H..HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf   2 lPnaiTllrlllsvlailllltyyplvlailllliasltDalDGklARrlnqvstlGkllDslaD 66 
                      +Pn+iT++r++++ +  + +++++ l++ail++ ++++tD+lDG++AR +n  s  G +lD++aD
       CCD22442.1  94 IPNIITMTRIACTPFIGY-FIVANNLTTAILFFSYSCITDFLDGYIARTYNLNSIAGTILDPIAD 157
                      8***********998886.4578889**************************888*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2530.06
//
Query:       CCD22443.1  [L=371]
Description: hypothetical protein NDAI_0A02860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-46  156.5   0.4    1.1e-45  155.8   0.1    1.6  2  Pro_isomerase   Cyclophilin type peptidyl-prolyl cis-trans is
    5.2e-05   22.9   1.2    0.00029   20.5   0.1    2.6  3  TPR_1           Tetratricopeptide repeat
    5.2e-05   23.0   0.7     0.0025   17.8   0.1    2.8  3  TPR_2           Tetratricopeptide repeat
      0.005   17.0   2.5      0.014   15.5   0.1    2.5  2  TPR_8           Tetratricopeptide repeat
     0.0097   16.0   0.5      0.017   15.3   0.5    1.4  1  TPR_9           Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.034   14.4   0.1      0.069   13.4   0.1    1.5  1  TFIID_NTD2      WD40 associated region in TFIID subunit, NTD2
      0.046   14.4   0.2      0.046   14.4   0.2    3.1  3  TPR_6           Tetratricopeptide repeat
      0.048   12.3   0.6      0.095   11.3   0.0    1.7  2  Glu_cys_ligase  Glutamate-cysteine ligase


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8   0.1   4.8e-49   1.1e-45       1     157 [.       7     173 ..       7     174 .. 0.90
   2 ?   -3.0   0.0       3.6     8e+03     131     139 ..     219     227 ..     193     247 .. 0.52

  Alignments for each domain:
  == domain 1  score: 155.8 bits;  conditional E-value: 4.8e-49
  Pro_isomerase   1 lvdietss..kGrivieLfadkaPktvenFlklvkeg.............fYdgttFhRvikgfmvqgGdptgktsageqe.kkggesiraipdEi 80 
                    ++di++++  +Griv+eL++d +PktvenFl+l+ eg              Y+g++FhRvik+fm+q Gd+t ++   ++  +  g   ++++dE+
     CCD22443.1   7 YFDISINDipQGRIVFELYNDVTPKTVENFLQLC-EGthgfcksdssiplSYKGSIFHRVIKDFMLQFGDFTRGDG--TGGeSIYG---EKFEDEN 96 
                    57889988999***********************.667999999**************************999855..32213333...69***** PP

  Pro_isomerase  81 tsklkh.krGalamartgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetde..erpkknvkivsae 157
                     ++l+h ++++l+ma++g  pn++gsq fIt+ ++phl+gk++vFG+V++G +vv+ ie+++ d+  +rp k vki +++
     CCD22443.1  97 -FQLTHdRPFLLSMANAG--PNTNGSQAFITTVPTPHLNGKHVVFGEVIQGKRVVRIIENLQCDQenNRPMKLVKIDDCG 173
                    .88899788*******98..8***************************************88888789********9997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.6
  Pro_isomerase 131 mdvvekiek 139
                     ++v++  +
     CCD22443.1 219 VETVKNVGT 227
                    222222222 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.46     1e+03       6      26 ..     224     244 ..     220     245 .. 0.83
   2 ?   -4.0   0.0       7.1   1.6e+04       6      17 ..     275     286 ..     275     287 .. 0.78
   3 !   20.5   0.1   1.3e-07   0.00029       1      34 []     308     341 ..     308     341 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.46
                 HHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyek 26 
                 n G   fk+++y+ A + y+k
  CCD22443.1 224 NVGTEQFKKQNYKVAMDKYKK 244
                 779999******988888877 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 7.1
                 HHHHHHHHTT-H CS
       TPR_1   6 nlGnayfklgky 17 
                 n+++  +k ++y
  CCD22443.1 275 NIALSALKAQDY 286
                 788888888887 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 1.3e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 akaly++G+ay++ ++ d A  + e A + +P++
  CCD22443.1 308 AKALYRRGLAYYHVNDTDMAMTDLELAATYRPDD 341
                 89***********************999999986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.074   1.7e+02       8      27 ..     226     245 ..     220     245 .. 0.86
   2 ?   -3.3   0.0       6.3   1.4e+04       6      17 ..     275     286 ..     275     287 .. 0.80
   3 !   17.8   0.1   1.1e-06    0.0025       1      34 []     308     341 ..     308     341 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.074
       TPR_2   8 GlayyklgdyeeAleafekA 27 
                 G   +k+++y+ A + ++k+
  CCD22443.1 226 GTEQFKKQNYKVAMDKYKKC 245
                 667799***********995 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.3
       TPR_2   6 nlGlayyklgdy 17 
                 n++l+++k++dy
  CCD22443.1 275 NIALSALKAQDY 286
                 578889999988 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 1.1e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+aly++Glayy+ +d + A  ++e A  + P++
  CCD22443.1 308 AKALYRRGLAYYHVNDTDMAMTDLELAATYRPDD 341
                 79**************************999986 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.6      0.43   9.6e+02      11      29 ..     229     247 ..     224     252 .. 0.71
   2 !   15.5   0.1   6.4e-06     0.014       1      34 []     308     341 ..     308     341 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.43
                 HHHTT-HHHHHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyekale 29 
                  +k+++y+ A+  y+k+ +
  CCD22443.1 229 QFKKQNYKVAMDKYKKCDK 247
                 5677888888888888755 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 6.4e-06
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 a+a+y+ g++y   +d ++A+  +e a +++pd+
  CCD22443.1 308 AKALYRRGLAYYHVNDTDMAMTDLELAATYRPDD 341
                 799****************************986 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.5   7.6e-06     0.017       5      63 ..     280     342 ..     276     350 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.6e-06
       TPR_9   5 aireedweralavverllll....aPddpeerrdRGlllaqlGclsaAladLeaylalapdap 63 
                 a+ ++d++  l ++  +l+     +   +  ++ RGl++++++++  A+ dLe ++   pd++
  CCD22443.1 280 ALKAQDYPTVLTASSEVLYAegatDTAKAKALYRRGLAYYHVNDTDMAMTDLELAATYRPDDA 342
                 677777777787777777777777778899999***********************9999654 PP

>> TFIID_NTD2  WD40 associated region in TFIID subunit, NTD2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.1e-05     0.069      53     119 ..     190     258 ..     181     270 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-05
                 HHHHHHHHGGGGGGGHH.HHHHHTT--SHHHHHHSHHHHHHHHS-EEEEEEHHHH..HHHHHHHHHTT- CS
  TFIID_NTD2  53 akkFfekfkedhealhkedlkkLasisspehleenelakafrenkyriklskaaf..elLlrfLeekek 119
                  ++F ++++ + ++  k d++++ s+ ++ +  +n  +++f++++y++ + k+    ++L+++  e+ +
  CCD22443.1 190 TDEFGDNYEISLKDDSKVDMNDFDSVIKAVETVKNVGTEQFKKQNYKVAMDKYKKcdKYLKEYFPEDLN 258
                 678999999999**************************************9865322778887766544 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       4.5     1e+04      12      26 ..     231     245 ..     228     250 .. 0.69
   2 ?    5.5   0.4     0.013        30       9      25 ..     297     314 ..     274     314 .. 0.74
   3 ?   14.4   0.2   2.1e-05     0.046       2      32 ..     310     340 ..     309     341 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.5
                 H.HHHHHHHHHHHHHH CS
       TPR_6  12 k.lgdtdkAlealerl 26 
                 k + ++  A++ ++++
  CCD22443.1 231 KkQ-NYKVAMDKYKKC 245
                 425.888888888775 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.013
                 HHHH.HHHHHHHHHHHHH CS
       TPR_6   9 syrk.lgdtdkAlealer 25 
                 +y + ++dt+kA+++++r
  CCD22443.1 297 LYAEgATDTAKAKALYRR 314
                 4556559*********97 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 Aly+++l+y+  +dtd A++ le   +  Pd
  CCD22443.1 310 ALYRRGLAYYHVNDTDMAMTDLELAATYRPD 340
                 9**********66*********999999888 PP

>> Glu_cys_ligase  Glutamate-cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3      0.53   1.2e+03     233     277 ..     197     242 ..     193     250 .. 0.76
   2 ?   11.3   0.0   4.2e-05     0.095      71     131 ..     259     318 ..     253     327 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.53
                     S-SGBCTTTT--SS-HHHHHHHHHHHHTSB-HHHHCT-SE.ETTEE CS
  Glu_cys_ligase 233 YtnkaqkklkisynsleeYveslkkaiktpseeyekigvk.kdgey 277
                     Y+ + +++ k+++n++++ +++++++ +  +e+++k + k   ++y
      CCD22443.1 197 YEISLKDDSKVDMNDFDSVIKAVETVKNVGTEQFKKQNYKvAMDKY 242
                     5556677888999999999999999999999999988877444555 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.2e-05
                     HHHHHHHHHHHHHHHTSSTT-EE--SSS-SS-STTGGS-B----SSHHHHHHHHHHHHHHH CS
  Glu_cys_ligase  71 eelleeLedlhrfvakkledellwplSmPcvlekeeeipiaqygssnagklktvYRegLkl 131
                     ee ++++++l+  v  ++    l ++  P+vl++++e+  a+ g ++++k k +YR+gL++
      CCD22443.1 259 EEQIAKINTLKVQVPLNIALSALKAQDYPTVLTASSEVLYAE-GATDTAKAKALYRRGLAY 318
                     677889999999999999999*********************.****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2775.40
//
Query:       CCD22444.1  [L=95]
Description: hypothetical protein NDAI_0A02870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-06   27.8   8.1      3e-06   27.2   8.1    1.3  1  CHCH      CHCH domain
  ------ inclusion threshold ------
      0.049   13.7   2.4      0.052   13.6   0.5    1.9  2  CX9C      CHCH-CHCH-like Cx9C, IMS import disulfide relay-sys


Domain annotation for each model (and alignments):
>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   8.1   3.4e-10     3e-06       1      35 []      41      74 ..      41      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 3.4e-10
                THHHHHHHHHHHHHCTSSTTTTHHHHHHHHHHHCC CS
        CHCH  1 CgeefkeylkClkdnsdefskCrkefeafkeCvkk 35
                C++e  +++ C  d +d +++C ke+e+fk+C++k
  CCD22444.1 41 CYIENLALQLCHADTND-WRQCFKEMEMFKKCWQK 74
                9****************.***************97 PP

>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.21   1.9e+03      27      40 ..      39      52 ..      33      55 .. 0.75
   2 ?   13.6   0.5   5.8e-06     0.052       6      23 ..      59      76 ..      58      80 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.21
        CX9C 27 ekCkeqkkeLakCi 40
                + C  +  +L+ C 
  CCD22444.1 39 TGCYIENLALQLCH 52
                56888888888885 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5.8e-06
        CX9C  6 kyCpkefeaYhkCvssnq 23
                ++C ke+e++ kC ++n 
  CCD22444.1 59 RQCFKEMEMFKKCWQKNG 76
                79***********99994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 708.94
//
Query:       CCD22445.1  [L=1289]
Description: hypothetical protein NDAI_0A02880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-25   87.8   2.9    1.4e-24   85.8   2.9    2.2  1  Sec31        Protein transport protein SEC31
    1.9e-08   34.5   0.2       0.47   10.8   0.0    3.8  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    8.7e-07   29.5   7.6        2.3    9.2   0.0    6.5  6  WD40         WD domain, G-beta repeat
    2.5e-06   27.4   2.5    7.2e-06   25.9   2.5    1.7  1  Sec16_C      Sec23-binding domain of Sec16
    4.5e-05   23.3   2.6    5.5e-05   23.0   0.1    2.6  2  SRA1         Steroid receptor RNA activator (SRA1)
      8e-05   22.6   0.5     0.0011   19.0   0.1    2.5  3  eIF2A        Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.011   15.8   2.0      0.023   14.8   0.4    2.3  2  Prp18        Prp18 domain
      0.029   14.3   0.3          2    8.3   0.1    2.5  2  Serglycin    Serglycin


Domain annotation for each model (and alignments):
>> Sec31  Protein transport protein SEC31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   2.9     6e-28   1.4e-24       1      49 [.     933     979 ..     933     980 .. 0.94

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 6e-28
       Sec31   1 pppppsnasvaSGQtPhLnkkAndGWNDLPlkvkeKpsRAKavsvaPva 49 
                 ppp+ps++  +SGQ+PhLn+kAndGWNDLP+k++ KpsRAKavsva++ 
  CCD22445.1 933 PPPVPSHM--HSGQSPHLNRKANDGWNDLPIKIEAKPSRAKAVSVAKTG 979
                 78899888..************************************975 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00021      0.47      36      76 ..      60     100 ..      40     144 .. 0.86
   2 !    9.0   0.0   0.00074       1.7      39      89 ..     164     220 ..     157     223 .. 0.85
   3 !   10.1   0.0   0.00035      0.78      33      80 ..     256     304 ..     234     312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00021
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  ++d + ++L W++ + ++a a ++g+++l++ e+   + sl
   CCD22445.1  60 TTDAKFNDLDWSHTNDFIAGALDNGKIELFSFEKNSDIPSL 100
                  67889999***********************9998766555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00074
  ANAPC4_WD40  39 sevrsLaWkpd.gklLavaysdgevrlldaesgkvvhslsvksek.....avtclgW 89 
                   e++sLaW+++  +++a a s ++ ++ d + +k v +l+++s +     + + ++W
   CCD22445.1 164 AEITSLAWNKSlAHVFASAGSTTHASIWDLKAKKEVIHLNYTSPTtglkpQLSVVEW 220
                  68******87648**************************999887666666666666 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00035
  ANAPC4_WD40  33 eedkedsevrsLaW.kpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  +++++++ + sL W ++d++l+  +  d++v l + e+gk + +++  +
   CCD22445.1 256 SQTQTQGGILSLDWcSQDESLMLASGRDNTVTLWNPETGKQLTTYPSRT 304
                  67899999******5566777788899**************99998765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.5   3.3e+03      28      38 .]      37      46 ..      15      46 .. 0.62
   2 ?    4.9   0.1     0.024        54      13      37 ..      65      89 ..      47      90 .. 0.68
   3 ?    4.8   0.0     0.025        56      18      38 .]     118     140 ..     100     140 .. 0.71
   4 ?    3.5   0.0     0.065   1.4e+02      13      38 .]     166     192 ..     152     192 .. 0.81
   5 ?    4.8   0.0     0.026        59      18      38 .]     220     244 ..     199     244 .. 0.71
   6 !    9.2   0.0     0.001       2.3      11      38 .]     262     290 ..     251     290 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.5
                EETTSEEEEEE CS
        WD40 28 GsdDgtvriWd 38
                +s D t+ +W+
  CCD22445.1 37 SS-DSTLELWS 46
                35.99999995 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.024
                EEEEEEETTSSEEEEEE.TTSEEEEE CS
        WD40 13 vtslafspdgawlasGs.dDgtvriW 37
                 ++l++s+ ++++a G  d+g++ ++
  CCD22445.1 65 FNDLDWSHTNDFIA-GAlDNGKIELF 89
                36777*******97.75479998875 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.025
                 EETTSSEE.EEE.ETTSEEEEEE CS
        WD40  18 fspdgawl.asG.sdDgtvriWd 38 
                 f+p ++ l asG s +g + iWd
  CCD22445.1 118 FNPKQTNLfASGgSNNGEIFIWD 140
                 666666652677568*******9 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.065
                 EEEEEEETTSSEEE..EEETTSEEEEEE CS
        WD40  13 vtslafspdgawla..sGsdDgtvriWd 38 
                 +tsla++++ a ++  +Gs   +  iWd
  CCD22445.1 166 ITSLAWNKSLAHVFasAGS-TTHASIWD 192
                 9***999999998522456.99999998 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.026
                 EETTSSE.EE..EE.ETTSEEEEEE CS
        WD40  18 fspdgaw.la..sG.sdDgtvriWd 38 
                 ++p ++  +a  +G ++D+++ +Wd
  CCD22445.1 220 WHPMNSTrVAtaTGaDKDPSILVWD 244
                 55555554541256347*******9 PP

  == domain 6  score: 9.2 bits;  conditional E-value: 0.001
                 SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtsla.fspdgawlasGsdDgtvriWd 38 
                 +++ sl+  s+d ++++++++D+tv +W+
  CCD22445.1 262 GGILSLDwCSQDESLMLASGRDNTVTLWN 290
                 458889754445555556667*******8 PP

>> Sec16_C  Sec23-binding domain of Sec16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   2.5   3.2e-09   7.2e-06      41     231 ..     525     734 ..     516     750 .. 0.65

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.2e-09
                 HHHHHHH---..---...THHHHHHHHHHTTT-HHHHHHHHHH...............................-HHHHHHHHHSHHHHHHHHHHTS.. CS
     Sec16_C  41 vvqefvrselk.ege...nsesLrvlyqvfaGnseeavdelvp...........tsaraslq.........qaeeskeaeealdkWretvalvlsnr.. 113
                 ++++ v++++k  ++   +s++L  ++ +  + + e ++++v+           +                +  +   ++  +++W+ t+ ++l     
  CCD22445.1 525 IIKNLVSNKYKeATKlslESDLLMEALVIALDSEDEYLKDMVKnayfaktcsksA------LsrivysiskKDVQDMIQNLDIEQWKLTLKTILKVYae 617
                 5555555555422223223355555555555555555555555444444332220......02233334332333334456689******999987756 PP

                 .--HHHHHHHHHHHHHHHTT-HHHHHHHHHHT-SSS.............BSSTTS--B--SSSTTSHHHHHHHHHHHHHH.HT....TT----CCCHHH CS
     Sec16_C 114 .spsdseaLtalGdlLaskgrveaahicyllalsqtslfggldspsarlvllgadhvkfessfakdlesilltEiyEfalslspaakekfaglphLlay 211
                  s ++++ L++lGd L+++++ + a ++yl a   +sl ++++   +++++l+++ ++ +++   + +s  ltE +E  + ls+ a + f++ ++ l  
  CCD22445.1 618 gSVEQKSSLVELGDKLLANNKRQDALVVYLAA---ESLDKMATLWLKEFPILEEQLKNEKDKTLYEAHSECLTEFIERFTVLSKFAGDDFKIHNEQLIS 713
                 5777799*************************...3556777778889*******99999999*************98888886666666665554444 PP

                 HHHH.HHHHHHTT-HHHHHHH CS
     Sec16_C 212 Kllh.AavLaelGlvseAqkY 231
                 K+l    + a  G+++ A+ +
  CCD22445.1 714 KFLEfVEITAAGGNFELASSF 734
                 444314455555566666655 PP

>> SRA1  Steroid receptor RNA activator (SRA1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.7       3.1     7e+03       7      26 ..    1001    1020 ..     997    1031 .. 0.74
   2 !   23.0   0.1   2.5e-08   5.5e-05      52     130 ..    1205    1283 ..    1112    1287 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.1
        SRA1    7 svaapppPsveavklsskee 26  
                  s++ pppP + a++++s+++
  CCD22445.1 1001 STNMPPPPLSRATSSASMMT 1020
                  66789999998888887765 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.5e-08
        SRA1   52 CrksvkkqvcddvekrLrlledsW.ksGkLslpvrkrmevLsqelqskrWdaaDdihrsLmvDhvtevsqWmvGvkrLia 130 
                    k+ +kq  +d +krL++l  +  ++  L+ p  + ++ L++ +++k +  a +ih  +  +h  e   W+ GvkrLi 
  CCD22445.1 1205 TPKEYHKQ-LKDCDKRLKILYGHLeRQDLLTQPTINELKELVECMKQKDYTKAMQIHTDIGTNHPEEGGNWLTGVKRLIG 1283
                  44555555.4799******9987625677899**********************************************95 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   4.7e-07    0.0011       9     140 ..      11     149 ..       6     158 .. 0.82
   2 ?   -2.2   0.0       1.4   3.1e+03     143     162 ..     212     232 ..     164     240 .. 0.63
   3 ?   -0.4   0.0       0.4     9e+02      54     104 ..     256     305 ..     241     326 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.7e-07
                 EEEEE-T.TTTEEEEEEE.E--TT-CEEEEEEEEEESSSTT--EEECCEESSS.EEEEEE-TTSS-EEEEESSSSC.EEEEEECS.......CEEEEEE CS
       eIF2A   9 vklkWnk.kGtsllvlvstevdktnksyygetelyliklkkkksevvelkkegpihdvaWspkskefaviyGkmpa.kvslfdlk.......vkviskl 98 
                 +++ W++ k  +l+  + + +   n s  +  el+ +  +++++ v +l+++ +  d+ Ws +++ f  i G  ++ k++lf+ +       +k is++
  CCD22445.1  11 ATFAWSHhKIPYLITGTASGTVDANFSSDSTLELWSLLSTDTNKPVTSLTTDAKFNDLDWSHTND-F--IAGALDNgKIELFSFEknsdipsLKSISQF 106
                 67788751457999999999999999999********************************9875.4..78*99999*****99556788889999999 PP

                 EEES..--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEE CS
       eIF2A  99 eeqk..rNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiak 140
                  ++      + f+pk++ +  +G g+ +Ge+ iwdv+k++  +k
  CCD22445.1 107 AKHTgaTKVVRFNPKQTNLFASG-GSNNGEIFIWDVTKLTPTTK 149
                 98761156699***998877777.5567********98876555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
                 -TT--EEEE-TT.SSEEEEEE CS
       eIF2A 143 aanatlvewspd.gryvlTat 162
                 +++ ++vew+p  ++ v+Tat
  CCD22445.1 212 KPQLSVVEWHPMnSTRVATAT 232
                 345578888885145577777 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.4
                 CCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEEES-- CS
       eIF2A  54 velkkegpihdvaWspkskefaviyGkmpakvslfdlkvkviskleeqkrN 104
                  + +++g i  + W ++ + +++  G  +++v+l++ +  +  ++  ++ N
  CCD22445.1 256 SQTQTQGGILSLDWCSQDESLMLASGR-DNTVTLWNPETGKQLTTYPSRTN 305
                 467888999999999999999999886.67899999875544444444444 PP

>> Prp18  Prp18 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.3   9.7e+03      29      58 ..     567     596 ..     554     602 .. 0.65
   2 ?   14.8   0.4     1e-05     0.023      29      83 ..    1207    1262 ..    1192    1266 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.3
       Prp18  29 kkesatlkqtkedlkpLlkklkkkkleedi 58 
                 k+++ + + +k+ l+++++++ kk++++ i
  CCD22445.1 567 KNAYFAKTCSKSALSRIVYSISKKDVQDMI 596
                 444444555677788888888888887665 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1e-05
       Prp18   29 kkesatlkqtkedlkpLlkklkkkkl.eedileklveivkalqkreyvkAndaYlk 83  
                  k+ +++lk++ + lk L  +l++++l ++  +++l e+v+++++++y+kA++++ +
  CCD22445.1 1207 KEYHKQLKDCDKRLKILYGHLERQDLlTQPTINELKELVECMKQKDYTKAMQIHTD 1262
                  6778999**************98875277799******************998765 PP

>> Serglycin  Serglycin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.033        75      83     139 ..     330     386 ..     309     394 .. 0.72
   2 ?    8.3   0.1    0.0009         2      80     120 ..     467     511 ..     451     531 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.033
   Serglycin  83 dvfplsedysgsgsGsGsGsGsgsgsgflteieqeYqpvdendafyynfrplkrnlp 139
                 +v+ l++   + +        s+s+ +f + ++q+ q + e+ +++  + p+    p
  CCD22445.1 330 EVVTLQDLTNELDKQETVSKQSESEADFWNHVNQDDQHTKEKPIVWNAYTPKWYGAP 386
                 55555555555555555556799*******************999999988765555 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0009
   Serglycin  80 nlndvfplsedy.sgsgsGs...GsGsGsgsgsgflteieqeYqp 120
                  l+d f++ ++   +   G       sG +sg++f+++ie++Yqp
  CCD22445.1 467 FLKDAFSFDDEDeDEEVIGGmegEKESGHDSGDEFFEKIETNYQP 511
                 567777776555322222321113469*****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.88u 0.30s 00:00:01.18 Elapsed: 00:00:00.46
# Mc/sec: 8413.46
//
Query:       CCD22446.1  [L=908]
Description: hypothetical protein NDAI_0A02890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-129  432.3  29.1   2.5e-129  432.1  29.1    1.1  1  Sugar_tr  Sugar (and other) transporter
    2.3e-21   76.1  34.7    6.4e-15   54.9  12.0    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.1  29.1  2.8e-133  2.5e-129       3     452 .]     115     569 ..     113     569 .. 0.95

  Alignments for each domain:
  == domain 1  score: 432.1 bits;  conditional E-value: 2.8e-133
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvigavlqaaakgkn 100
                 +++a+gg+lfgYdtg+i+++++++ + ++ + ++++ +     + ++++vs++++G +iG+l a +++d +GRk ++++ ++++f+ig+ lq+ a    
  CCD22446.1 115 VFVAVGGFLFGYDTGLINSITEMNYVKTHLTPNHEYFTS----TEMSILVSFLSLGTFIGALSAPIISDSYGRKLTIMMsTIIIFSIGNSLQVGAS--- 206
                 6799*********************77777777766544....57**********************************88999************... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPESPryl 198
                  + +l+vgRv++G+g+Gl+s++vP+y++E A+k+lRga++s yq+ait+G lv++ +  g+ n+t++ + +r++lglq+v++ +l+i+++flPESPry+
  CCD22446.1 207 GMVLLVVGRVISGLGIGLISAVVPLYQAEAAHKSLRGAIISTYQWAITWGLLVSSAVAQGThNRTDA-TSYRLPLGLQYVWSFILAIGMIFLPESPRYY 304
                 99***********************************************************777777.9****************************** PP

                 HHTT-HHHHHHHHHHHHHC....HHHHHHHHHHHHHHHHHHH......HTTHHHHSH......HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH CS
    Sugar_tr 199 vekgkeeeakevlaklrge....edadrelaeekdsleaeqeee.kaswkellsskt...vrqrlligvvlqifqqltGinaimyysptifenlglsks 289
                 v k++ ++a e l+ lr +    ++  +el+e+k+++++e++   +++w+++l++kt   ++ r+++g+++q+fqq++Gin+i+yy+ ++f+++g+ +s
  CCD22446.1 305 VLKDELDKAAEALSFLRRVpihdSGLLEELVEIKATYDYESSFGsTTFWDCFLTTKTrpkQTLRMFTGIAIQAFQQFSGINFIFYYGVNFFNDTGVHNS 403
                 *****************9977778888899999999999977779*************9999************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHH CS
    Sugar_tr 290 llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskal 388
                 +lv++i ++vn+++ + ++ lv+ fGRR++ll+G++ m++  +i++iv   +++   +a  v+i+fi+lfia+f+++wg+v+wv+++El+p+++Rsk++
  CCD22446.1 404 YLVSFICYAVNVIFNVPGMILVEFFGRRKVLLTGGVLMFMSNFIIAIVGSSVESV--VADKVMIAFICLFIAAFSATWGGVVWVISAELYPLGIRSKCT 500
                 *********************************************9444444444..9***************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHCHHH.....T-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 389 aiavavnwlanflisllfpiiteaig.....ggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 ai++a+nwl+nf+++l++p+i+++ +     g+++++++++l++l++++v+f+v+etkg+tle+i+el+
  CCD22446.1 501 AICAAANWLVNFICALITPYIVDTGShtstlGPKIYFIWGSLNALATVVVYFTVYETKGLTLEQIDELY 569
                 ************************999***************************************986 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9  12.0   7.2e-19   6.4e-15       2     189 ..     118     333 ..     117     398 .. 0.79
   2 !   25.1  17.4   8.5e-10   7.6e-06      31     179 ..     400     559 ..     369     600 .. 0.71

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 7.2e-19
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg.....ispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalg.lllllfasslwlllvlr 92 
                 ++++fl +++ ++++++  + +++++l+     ++ +e+++l+++ +lg+++++l +  +sd +Gr+  +++ ++++f++g +l    as++ ll+v+r
  CCD22446.1 118 AVGGFLFGYDTGLINSITEMnYVKTHLTpnheyFTSTEMSILVSFLSLGTFIGALSAPIISDSYGRKLtIMMSTIIIFSIGnSLQVG-ASGMVLLVVGR 215
                 7899**********************99999999***********************************************766666.59999****** PP

       MFS_1  93 vlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee 188
                 v++Glg g++ +++  + a+ ++k+ rg  i+ ++ ++  G ++  +++           +r++  +  + s+++++ ++++lpe+p+    k + ++ 
  CCD22446.1 216 VISGLGIGLISAVVPLYQAEAAHKSLRGAIISTYQWAITWGLLVSSAVAQGTHNRTDatsYRLPLGLQYVWSFILAI-GMIFLPESPRYYVLKDELDKA 313
                 *********************************************999987765555666***************99.559999999888888877775 PP

       MFS_1 189 ...................k 189
                                    +
  CCD22446.1 314 aealsflrrvpihdsglleE 333
                 66666655555555444440 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 8.5e-10
       MFS_1  31 pseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.......sslwlllvlrv.lqGlgagalfpagaaliadwfpkeergr 121
                 ++   l+  +++++ +++++p++ l++ fGrr+vll+g +l++ + ++++++           +++++ + + ++++++   ++ ++ a+++p   r++
  CCD22446.1 400 VHNSYLVSFICYAVNVIFNVPGMILVEFFGRRKVLLTGGVLMFMSNFIIAIVgssvesvVADKVMIAFIClFIAAFSATWGGVVWVISAELYPLGIRSK 498
                 333445667799999******************************666664332333332244355555525555555666666688899********* PP

       MFS_1 122 aigllsagfslGailgpllggllasslg.....Wravfyilaivsllafvlfllllpeepper 179
                  +++ +a++ l   + +l+ +++++ ++      + +++i + + +la v+  +++++ +++ 
  CCD22446.1 499 CTAICAAANWLVNFICALITPYIVDTGShtstlGPKIYFIWGSLNALATVV--VYFTVYETKG 559
                 ************************9999776666666***********998..5554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 6177.73
//
Query:       CCD22447.1  [L=368]
Description: hypothetical protein NDAI_0A02900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2643.82
//
Query:       CCD22448.1  [L=181]
Description: hypothetical protein NDAI_0A02910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-78  261.1   0.0    3.9e-78  260.9   0.0    1.0  1  Arf              ADP-ribosylation factor family
    1.4e-14   54.3   0.1    1.9e-14   53.9   0.1    1.2  1  Roc              Ras of Complex, Roc, domain of DAPkinase
      3e-14   52.9   0.0    3.2e-14   52.8   0.0    1.1  1  Ras              Ras family
    7.3e-14   51.6   0.0    8.9e-14   51.3   0.0    1.1  1  SRPRB            Signal recognition particle receptor beta su
    5.3e-12   45.6   1.0    3.8e-08   32.9   0.1    2.3  2  G-alpha          G-protein alpha subunit
    1.4e-09   37.7   0.0    1.7e-09   37.4   0.0    1.1  1  Gtr1_RagA        Gtr1/RagA G protein conserved region
    1.9e-05   24.7   0.0      3e-05   24.1   0.0    1.3  1  MMR_HSR1         50S ribosome-binding GTPase
     0.0081   15.8   0.2      0.015   14.9   0.2    1.4  1  SRP54            SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
      0.038   14.5   0.1       0.07   13.7   0.1    1.5  1  ABC_tran         ABC transporter
      0.041   14.0   0.6        0.1   12.8   0.6    1.9  1  AAA_33           AAA domain
      0.047   13.0   0.2      0.072   12.4   0.2    1.6  1  6PF2K            6-phosphofructo-2-kinase
      0.053   13.1   0.1        7.5    6.1   0.2    2.1  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.055   13.0   0.0       0.17   11.4   0.0    1.6  2  GTP_EFTU         Elongation factor Tu GTP binding domain
      0.069   13.1   0.1        9.7    6.1   0.0    2.1  2  RsgA_GTPase      RsgA GTPase
      0.089   13.3   0.1       0.14   12.7   0.1    1.4  1  AAA_18           AAA domain
       0.15   12.0   0.4         14    5.6   0.0    2.1  2  NACHT            NACHT domain
       0.24   11.1   0.5       0.97    9.1   0.3    1.8  2  Thymidylate_kin  Thymidylate kinase


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.9   0.0   3.7e-81   3.9e-78       2     174 ..       6     176 ..       5     177 .. 0.99

  Alignments for each domain:
  == domain 1  score: 260.9 bits;  conditional E-value: 3.7e-81
                 HHHHHGGTT.TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHH CS
         Arf   2 lsilaklklkkkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleea 100
                 ++++++l++ +ke+ril++GLD+aGKtT+l+klkl+e+ tt+PTigfnve++++kn++ftvwDvGGq+++R+lW++Y+++t++vifvvDs+dr+R+ ea
  CCD22448.1   6 SKLFSNLFG-NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEA 103
                 5789999*9.***************************************************************************************** PP

                 HHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 101 keeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 +e ++++l+e+el+++++lv+aNKqDlpea+s++e++e+lgl++++ +r++ iq+++a++gegl+eglewls++
  CCD22448.1 104 REVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIR-NRPWFIQSTCATSGEGLYEGLEWLSNN 176
                 **********************************************.*************************97 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.1   1.8e-17   1.9e-14       1     119 [.      19     129 ..      19     130 .. 0.78

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 1.8e-17
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCH...H CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenl...k 96 
                 ++++vG  g+GKt+ l ++  +++  ++ +tig ++ t +             k++++ +WD++Gq+r+rsl ++y+r+ + +i+v+ds++ +++   +
  CCD22448.1  19 RILMVGLDGAGKTTVLYKLKLGEVI-TTIPTIGFNVETVQ------------YKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIgeaR 104
                 699******************9996.568*****996543............25799*******************************88766542114 PP

                 HHHHHHHHHCS..SS-EEEEEE-TT CS
         Roc  97 eWlkelkkvag..kspvilvgnkiD 119
                 e ++ + ++ +  +++ ++ +nk D
  CCD22448.1 105 EVMQRMLNEDElrNAVWLVFANKQD 129
                 5555554433321556678889998 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   3.1e-17   3.2e-14       2     133 ..      20     150 ..      19     179 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 3.1e-17
                 EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrv 100
                 +++vG  + GKt++l++   ++  +  ++Tig++  t    v+ k++++++wD  Gq++ +sl + yyr++eg++ v d ++r+   ++++ ++ + + 
  CCD22448.1  20 ILMVGLDGAGKTTVLYKLKLGEVIT-TIPTIGFNVET----VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNE 113
                 899******************9876.59***877654....45689***********************************************999999 PP

                 ST.TTSEEEEEEETTTGGG...G-SS-HHHHHHHHHH CS
         Ras 101 ae.envpivLvGnKvDlee...kravsteegeelake 133
                  e +n + ++ +nK Dl e     +++++ g +  ++
  CCD22448.1 114 DElRNAVWLVFANKQDLPEamsAAEITEKLGLHSIRN 150
                 99888999999******98555555666555554444 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   8.4e-17   8.9e-14       2     137 ..      16     143 ..      15     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 8.4e-17
                 ---EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHH CS
       SRPRB   2 skpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEll 99 
                 ++ ++l+vGl  +GKT+++ +L  ++v +t   +  +  + ++   k+ ++t+ D+ G++++r+    +  + ++  g++fvvDS  d  ++ e  E +
  CCD22448.1  16 KEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIgFNVETVQY---KNISFTVWDVGGQDRIRSLWR-H--YYRNTEGVIFVVDSN-DRSRIGEAREVM 107
                 5678******************************889999999...*****************8554.4..58899********97.7778******** PP

                 HHHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHH CS
       SRPRB 100 yeilliteklkdavdiliACnKqelflakspklikdaL 137
                   +l + e l++av ++ A nKq+l  a s+  i ++L
  CCD22448.1 108 QRMLNEDE-LRNAVWLVFA-NKQDLPEAMSAAEITEKL 143
                 ****9999.8899987766.*************99988 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00014      0.15      21      45 ..      15      39 ..       7      42 .. 0.88
   2 !   32.9   0.1   3.6e-11   3.8e-08     185     281 ..      45     130 ..      40     138 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
                ..EEEEEEEESTTSSHHHHHHHHHH CS
     G-alpha 21 krevkllllGqseSGKsTilkqlkl 45
                ++e+++l++G ++ GK+T+l +lkl
  CCD22448.1 15 NKEMRILMVGLDGAGKTTVLYKLKL 39
                369*****************99985 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 3.6e-11
                 -----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HHH CS
     G-alpha 185 rlktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlDi 281
                  ++t+G++  +++++ +++f+++dvgGq   r  W +++ +++ +iF+v           ++  +r+ e+ ++ + ++n+ +l+n+  ++f nK D+
  CCD22448.1  45 TIPTIGFNVETVQYK-NISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVD----------SNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDL 130
                 478999999999999.********************************97..........55669*****************************997 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   1.6e-12   1.7e-09       1     135 [.      19     142 ..      19     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.6e-12
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.leedletl 98 
                 ++L++G  g+GKt+    +  ++   ++++   ti  + ++v  ++n+ + +wD+gGq+++          + +rn + +i+V+D+++r+ + e+ e +
  CCD22448.1  19 RILMVGLDGAGKTT----VLYKLKLGEVITTIPTIGFNVETV-QYKNISFTVWDVGGQDRIRSL-----WRHYYRNTEGVIFVVDSNDRSrIGEAREVM 107
                 689**********8....45678888999999**********.699*************98766.....4899**************886466666666 PP

   Gtr1_RagA  99 keilealrqyspeakvfvlihKmDliqedereeifee 135
                 +++l++  +  ++a   v+ +K Dl + +  +ei e+
  CCD22448.1 108 QRMLNE--DELRNAVWLVFANKQDLPEAMSAAEITEK 142
                 666654..456788999999***99998888887765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.8e-08     3e-05       1     113 [.      19     126 ..      19     127 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2.8e-08
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek.glgkaflaleeadlillvvdas.eeklkpldeel 97 
                 +++ vG   +GK+t++ +l   ++i+      T+  n ++v++k+ +++++D+ G  +    +  +l +++ +  +++ +++vvd++ ++ + + +e +
  CCD22448.1  19 RILMVGLDGAGKTTVLYKLKLGEVIT---TIPTIGFNVETVQYKNISFTVWDVGG-QD----RIrSLWRHYYR--NTEGVIFVVDSNdRSRIGEAREVM 107
                 5899***************7665655...345788888888888999********.44....22356666664..578*******77633577777777 PP

                 HHHHHH...TTSEEEEEEE CS
    MMR_HSR1  98 eellee...akkplilvln 113
                 +++l+e   ++  +++ +n
  CCD22448.1 108 QRMLNEdelRNAVWLVFAN 126
                 7777665433333455555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   1.4e-05     0.015       3      21 ..      19      37 ..      17      42 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
                EEEEEESTTSSHHHHHHHH CS
       SRP54  3 villvGlqGaGKTttlaKL 21
                 il+vGl GaGKTt l KL
  CCD22448.1 19 RILMVGLDGAGKTTVLYKL 37
                59**************998 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   6.6e-05      0.07      11      80 ..      17     117 ..      11     164 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.6e-05
                 TSEEEEEESTTSSHHHHH.HHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH............................. CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF
    ABC_tran  11 gekvaivGenGaGKStLl.kllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren............................. 79 
                   ++ +vG  GaGK+t+l kl +g++  t  +i ++ + +++++++++   +g      +l++++  r++                             
  CCD22448.1  17 EMRILMVGLDGAGKTTVLyKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHY-YRNTegvifvvdsndrsrigearevmqrmlned 114
                 567899**********8735668999999999988888888844444333333333334444444.222234444444433333333344444444444 PP

                 ..H CS
                 ..x RF
    ABC_tran  80 ..e 80 
                    
  CCD22448.1 115 elR 117
                 440 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.6   9.5e-05       0.1       2      19 ..      20      37 ..      20     152 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.5e-05
      AAA_33  2 vllvGlpGsGKstlaerl 19
                +l+vGl G+GK+t++ +l
  CCD22448.1 20 ILMVGLDGAGKTTVLYKL 37
                79***********98776 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   6.8e-05     0.072       7      53 ..      11      57 ..       5     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.8e-05
                HHT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH CS
       6PF2K  7 tnlknsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyr 53
                + + n+++ i++vGL   gKt++  kl      ++++t  Fnv  ++
  CCD22448.1 11 NLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQ 57
                556788999*****************988888889999999997655 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2    0.0071       7.5       4      20 ..      21      37 ..      18      43 .. 0.86
   2 ?    5.0   0.0     0.015        16     112     162 ..      85     139 ..      75     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0071
                EEEESTTCCHHHHHHHH CS
        cobW  4 vltGflGsGKTtLlnhl 20
                +++G  G+GKTt+l +l
  CCD22448.1 21 LMVGLDGAGKTTVLYKL 37
                678999*******9876 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.015
                 ECEEEEEEETTTH.....CCHCCHHHHHHHHHHTSSEEEE.E-HHHHCHC..HHHH CS
        cobW 112 ldavvavvDaknl....eaeeekieekaedqlaaadllvl.nKtDlldeeallekl 162
                  ++v++vvD++      ea+e  ++ + ed+l  a  lv+ nK Dl ++    +++
  CCD22448.1  85 TEGVIFVVDSNDRsrigEAREVMQRMLNEDELRNAVWLVFaNKQDLPEAMSA-AEI 139
                 5799******888888888888888899999999987664499999887744.444 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.1   1.2e+03       7      23 ..      21      37 ..      16      45 .. 0.74
   2 ?   11.4   0.0   0.00016      0.17      59     137 ..      52     133 ..      41     151 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.1
                EEEESTTSSHHHHHHHH CS
    GTP_EFTU  7 giighvDhGKtTLtdrL 23
                 ++g   +GKtT++ +L
  CCD22448.1 21 LMVGLDGAGKTTVLYKL 37
                55566679****98776 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00016
                 EEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.STHHHHHHHHHHHHT.TTE...EEEEEESCGSTHH CS
    GTP_EFTU  59 aaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.vepqteevlrlalke.gvp...iivfiNKmDrlka 137
                 ++ ++  ++k+  +++ D  G     +   + +r ++g+++vvd+++       +ev++ +l+e +++     vf NK D ++a
  CCD22448.1  52 NVETV--QYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRsRIGEAREVMQRMLNEdELRnavWLVFANKQDLPEA 133
                 33444..4899999999999999999999999**************874455667776655554155566799*******9944 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.017        18     101     122 ..      19      40 ..       6      53 .. 0.80
   2 ?    6.1   0.0    0.0092       9.7       4      71 ..      73     142 ..      71     180 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.017
                  EEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpe 122
                   +++vG  G+GK+t++ +l+  
   CCD22448.1  19 RILMVGLDGAGKTTVLYKLKLG 40 
                  46789**********9998754 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0092
                  -S-EETTTTEES--EEEEEE.ESTTTT-..-HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHH CS
  RsgA_GTPase   4 RknelvrpkvaNvdqllivv.slkepel..slnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkee 71 
                  R  +l r+   N + ++ vv s ++ ++    + ++r+L + e +++  ++  nK Dl e ++ + e+ e+
   CCD22448.1  73 RIRSLWRHYYRNTEGVIFVVdSNDRSRIgeAREVMQRMLNEDELRNAVWLVFANKQDLPEAMS-AAEITEK 142
                  556667777777776655441444444422456799***********************9999.4444333 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   0.00013      0.14       1      44 [.      20      69 ..      20     128 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00013
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf.......gvnlrdvakenglllevdpe 44
                Il  G  G+GKtt+   L k++++       g+n+  v ++n + + +d  
  CCD22448.1 20 ILMVGLDGAGKTTVLYKL-KLGEVittiptiGFNVETVQYKNISFTVWDVG 69
                7889**************.65556678888866666666666555555544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.3     0.028        30       3      20 ..      20      37 ..      18      40 .. 0.87
   2 ?    5.6   0.0     0.013        14      68     135 ..      73     133 ..      63     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.028
                EEEEC-TTTCHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqkl 20
                +++ G  G GKTt l kl
  CCD22448.1 20 ILMVGLDGAGKTTVLYKL 37
                7899**********9988 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.013
                 SS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHH CS
       NACHT  68 pvsevwavllelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpralrdl 135
                 +++  w +  ++ e + +++D+ D+ +   g+     +r+++++++++  l++a +l+ +  + l+++
  CCD22448.1  73 RIRSLWRHYYRNTEGVIFVVDSNDRSRI--GE-----AREVMQRMLNEDELRNAVWLVFANKQDLPEA 133
                 56778999999999999*****999875..44.....6899999999999999999998887777663 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.3   0.00092      0.97       3      17 ..      24      38 ..      23      40 .. 0.91
   2 ?   -0.3   0.0      0.68   7.2e+02      21      65 ..      82     127 ..      72     164 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00092
                     ESTTSSHHHHHHHHH CS
  Thymidylate_kin  3 GlDGaGKttqaellk 17
                     GlDGaGKtt++ +lk
       CCD22448.1 24 GLDGAGKTTVLYKLK 38
                     9********998876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.68
                      HHTTE..EEEESSSTTSHHHHHHHHHHHTCS---HHH.HHHHHHHHH CS
  Thymidylate_kin  21 keegik.vvltrepggteiGekirelllkeeeleeqt.eallfaadr 65 
                       ++++  +++   ++ ++iGe +re+++++ + +e++ ++ l +a++
       CCD22448.1  82 YRNTEGvIFVVDSNDRSRIGE-AREVMQRMLNEDELRnAVWLVFANK 127
                      455545344444455556665.5666665655555554555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1328.11
//
Query:       CCD22449.1  [L=491]
Description: hypothetical protein NDAI_0A02920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-40  137.9  15.2    5.6e-40  137.3  15.2    1.2  1  Vps5      Vps5 C terminal like
    2.1e-10   40.6   0.1    6.8e-10   38.9   0.1    1.9  1  PX        PX domain
      0.003   17.5   0.9     0.0097   15.9   0.2    2.1  2  ELF       ELF protein
  ------ inclusion threshold ------
        9.8    6.3  17.0       0.07   13.2   6.4    2.7  3  Mod_r     Modifier of rudimentary (Mod(r)) protein


Domain annotation for each model (and alignments):
>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.3  15.2   1.3e-43   5.6e-40       6     235 ..     256     489 ..     252     490 .. 0.95

  Alignments for each domain:
  == domain 1  score: 137.3 bits;  conditional E-value: 1.3e-43
        Vps5   6 kkltssisksstkfeEqDewFedkkqeldslesqLkkLykaiellvsqrkelasataelakslesLaslelskslsralsqlaeveerikellerqaeq 104
                 ++ +ss+ +s++k++E+DewF ++ +++ sl+ qL +L ka++l ++qr +++s+++e++  ++sL++le +k+ s+++++ a++ e+ ++ l+  +++
  CCD22449.1 256 HNIISSFMNSVPKYSEPDEWFDKRLESISSLQIQLSELNKALKLASNQRDDVVSVINEFSIIINSLSDLEGTKQGSTLFHNYANIFENQRDFLKSYSDE 354
                 6788999999***************************************************************************************** PP

        Vps5 105 dvltLgetideylrligsvksvfeqRvklwqkwqsaeqelskkkeqleKlekaaksq....qdklqqlkkeveelerkvqeaekeFeeisetikkEler 199
                 + +   e+++ y  +++s+k++++qR+kl++ +  +++++sk k  leK + ++++      +kl ql++e + ler+++ + +++e+is++ik+E+++
  CCD22449.1 355 ERMLKIEYLEFYKYSLESMKAILNQRSKLGYFMTVVKADMSKSKILLEKQNVSTENTenakSEKLIQLEQECHILERRYHILIEQWEQISSVIKEEVSK 453
                 **9999**************************************9999987765554334489************************************ PP

        Vps5 200 FetervedfknvvekyLesaiesqkevielWetfls 235
                 F+ e ++ f+ +v + L+s i+ qke i+ + tf s
  CCD22449.1 454 FNVEVANTFRANVADLLKSFINLQKENIDSFTTFQS 489
                 ********************************9975 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.1   1.5e-13   6.8e-10      30     112 ..     126     199 ..     101     200 .. 0.89

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.5e-13
                 TSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHHS CS
          PX  30 tgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLev 112
                 +  ++  v RrY dF +L+++L++++++ +iP  P+  +++         +++ r+ +e++L  ++n++ l+n+++++ FL+ 
  CCD22449.1 126 E-NEYIMVTRRYADFRWLYRQLQNNHWGKIIPVPPPLEILS--------DLRSVRRWMESMLHIIMNDSGLQNDKDFHMFLTC 199
                 3.58999*****************************99886........59******************************85 PP

>> ELF  ELF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   2.2e-06    0.0097      61     114 ..     306     362 ..     282     369 .. 0.84
   2 ?   -1.6   0.0      0.59   2.6e+03      52      75 ..     466     490 ..     430     491 .] 0.63

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.2e-06
         ELF  61 dhiratdsftvlqasyqdlrenegGsvffre...vvshnrdlleaessarrcleveq 114
                 d +   ++f+++  s  dl+  ++Gs +f++   +   +rd+l++ s + r+l++e 
  CCD22449.1 306 DVVSVINEFSIIINSLSDLEGTKQGSTLFHNyanIFENQRDFLKSYSDEERMLKIEY 362
                 778889*********************9976222667889*************9995 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.59
         ELF  52 vdealrsyldhir.atdsftvlqas 75 
                 v + l+s+++  +   dsft +q+s
  CCD22449.1 466 VADLLKSFINLQKeNIDSFTTFQSS 490
                 4556777777654256888888876 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2         1   4.6e+03      34      78 ..      34      78 ..      19      90 .. 0.51
   2 ?   -1.1   0.1       0.4   1.8e+03      60      86 ..     273     299 ..     253     317 .. 0.56
   3 ?   13.2   6.4   1.6e-05      0.07       3      94 ..     368     457 ..     366     486 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1
       Mod_r 34 ekeellaeneslaeknlsl.epeleelrselqekleelkelekefe 78
                ++e+l    +++ ++  s+ + +       ++ ++e+l+ l ++++
  CCD22449.1 34 QLESLGL-DQETYRRLFSKpRSRNSTSNTAISTERESLHVLGTSVQ 78
                4444422.23333444444444444444445555555555555555 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.4
       Mod_r  60 rselqekleelkelekefeekeqelde 86 
                  + + ++le++ +l+ ++ e+++ l+ 
  CCD22449.1 273 DEWFDKRLESISSLQIQLSELNKALKL 299
                 444445555555555555555554443 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 1.6e-05
       Mod_r   3 lSkeeLqelledeeklealvktlpevkqlkeekeellaeneslaeknlslepeleelrselqekleelkelekefeekeqeldellqkfspd 94 
                  S+e ++++l++ +kl  +++ ++   ++ ++k  l+++n+s+ +   ++ ++l +l +e+      ++ l +++e+  +  +e ++kf+ +
  CCD22449.1 368 YSLESMKAILNQRSKLGYFMTVVK--ADMSKSKILLEKQNVSTENTENAKSEKLIQLEQECHILERRYHILIEQWEQISSVIKEEVSKFNVE 457
                 79999***********99994332..477888888888888888888888888888888888888888888888888888888888888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1105  (0.061632); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3757.47
//
Query:       CCD22450.1  [L=991]
Description: hypothetical protein NDAI_0A02930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.3e-203  675.9  12.5   6.3e-203  675.9  12.5    1.7  2  Ufd2P_core     Ubiquitin elongating factor core
    2.5e-27   94.9   1.0    2.5e-27   94.9   1.0    2.3  3  U-box          U-box domain
  ------ inclusion threshold ------
      0.042   12.6   0.4      0.093   11.5   0.4    1.5  1  Peptidase_M32  Carboxypeptidase Taq (M32) metallopeptidase


Domain annotation for each model (and alignments):
>> Ufd2P_core  Ubiquitin elongating factor core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.0      0.16   9.5e+02      37      93 ..     113     183 ..      96     206 .. 0.68
   2 !  675.9  12.5    1e-206  6.3e-203       1     624 [.     213     895 ..     213     896 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHT-GGGGSSS--GG...............G CS
  Ufd2P_core  37 tysslrqelktiqenlveiiknllkassesRervlkwlakilnlNekrakiqvdps...............k 93 
                   +++ ++ +++ e l++++ + +k++ ++ e + ++++++l++ +++ + ++++s               +
  CCD22450.1 113 FLNQILSKFDSFNEFLFQLLTRAIKEG-STMEFLENFFNALLEITKDKDHFNINHSelyntvltvfemflsT 183
                 556677788888888999999999988.88888889999999999999888887775555444444444444 PP

  == domain 2  score: 675.9 bits;  conditional E-value: 1e-206
                 THHHHT--TTS....HHHHHHHT..........................TT-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH CS
  Ufd2P_core   1 LGpllslsvlpdenepevakkyF........................sepktrsksdlkstysslrqelktiqenlveiiknllkassesRervlkwla 75 
                 LGp+lsls+l+    p va + F                        +e + ++k+dlk + +sl++e++ i+++l++ii++l+++s+esRe++l+++a
  CCD22450.1 213 LGPILSLSPLS----PVVALQNFesiaivsniqtggddsdggendeeEELDFNQKKDLKLISESLQNEHNIIIQRLFSIIDKLFRGSKESREDLLNYFA 307
                 9**********....779*****9999999999999998888765333333667778888*************************************** PP

                 HHHHT-GGGGSSS.--GGGS--HHHHHHHHHHHHHHHGGGGSTT-TTGGGS-TTTTSS.-SSS--TT--BSSB-HHHHHHHHHHCTTS...---HHHHH CS
  Ufd2P_core  76 kilnlNekrakiq.vdpskvssdgfmlNllavLlrLcepfldatfskidkidpnylllpskrldlkdetrlnadeeeveefyeqkeke...kpnFitei 170
                 +i+n+N+ r++ +   ++k++s++fm N++ +L+++++pfld ++ski+kid+ny+++ + ++dl++etr+n+d +e++efy++ +++   +pnFi+++
  CCD22450.1 308 QIVNKNHLRRADYgQRQNKLASNAFMSNITILLIKFSQPFLDLSYSKINKIDINYFNSLNIFIDLSNETRVNSDFKEADEFYDKYKNSsdaPPNFISHC 406
                 **********99967788**************************************777*********************99444444578******** PP

                 HHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTT-............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH CS
  Ufd2P_core 171 Ffltlkalhlglkpaisefkrllqelkrlqdeleeleae............aaqleeqlkklkkelekllseklaleavlldpellqellkFlrlvaaw 257
                 Ffltl++lh+g+++ + + ++++ ++krl++e+++le+             +++l++ql++l+++l+ ++s k++l+ ++ ++++++e+++F+  ++++
  CCD22450.1 407 FFLTLTYLHYGIGGSLLYDEKITPQIKRLSSEVRKLEKViarnvstnnnfmNNFLKQQLRTLTNNLKVMKSLKYTLKSFFANSSIQTEIFDFIGGASTF 505
                 ************************************999************************************************************ PP

                 HHHHHSTT--TTSS---S-SS................HTS-TTGGGSBTHHHHHHHHHHHHHTTSTT-TTTT..-TTH..HHHHHHHHHHHH-TTS--- CS
  Ufd2P_core 258 llrvadpknlkpkkklklPlp................eespeqfkvlPeffledivdfllfllrlkpkvles.llssldldeliefiivflrsseyikn 339
                 l+rv+dp +++p k+++lPl                 +++p +fk++Pef++e +v++ ++++++++++l++ l +   l++++e+++v+lr++e+++n
  CCD22450.1 506 LIRVIDPAHSYPFKPIQLPLIpdqiglenvdaadylrQQAPVPFKYYPEFIIEGLVNYSVYISKYSNSPLYTsLGNNARLNSFVELTTVLLRCPEIVSN 604
                 ********************5578888889999999888*******************************9996666778******************* PP

                 HHHHHHHHHHHHHCCS--TT.--TTHHHHHH-HHHHCCHHHHHHHHHHHCCCT-SSSSSTCHHHHHHHHHHHHHHHH.H-HH.HHHHHHHHHHHSHHHH CS
  Ufd2P_core 340 phlraklvevlfkgslplse.kgalkklleshelakkhLlkaLlkfYidvEktgqssqFydKfniRyniseilkslw.knes.yrnqltklakeneelF 435
                 phl++k+v++l++gs+pl++ +g+++++++++el++k+Ll+aLl+fY+ vEktg+ssqFydKfn+Ry+is il++++  +++ y++ql+++ak+n+++F
  CCD22450.1 605 PHLKSKIVQILSIGSYPLNGgQGFMMSIFQNNELVRKNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILQEIYqATPTiYKDQLFHQAKDNSDFF 703
                 *******************9889******************************************************877778**************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---....-----..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGCSHHHHHHHHHH CS
  Ufd2P_core 436 vrFinlllNDvtflldealskLkeikelqeeledqeewsslseee..rqekeesleqlerqaksylqlanetvkllklltkeipepfltpeivdrlaam 532
                 +rFi+++lND+tfllde l++L+e+++l+++l+++ +  ++++ e  +++ +++l++++rqaks+++la++++ l++++t+++p +f+tpeiv rla+m
  CCD22450.1 704 IRFIARMLNDLTFLLDEGLTNLSEVHNLHNQLASNPQPPQTENGEgnENDIHTRLASAQRQAKSSCGLATKSMILFEIFTRDLPRSFVTPEIVGRLASM 802
                 *********************************444322223322569999************************************************ PP

                 HHHHHHHHHSHHHHT---SSGGGGT--HHHHHHHHHHHHHHCTT-HHHHHHHHH-TTT--HHHHHHHHHHHTTS.TSSTHHHHHHHHHHHHHH CS
  Ufd2P_core 533 LnynLdqLvGpkcknLkVknpekynFrPkelLssiveiYlnLskeeeFvkavakDgRsYkkelFekavrilkre.gllseeelekfkelaqkv 624
                 LnynL++LvGpkc +LkV+npe y+F+PkelL+s+++iY+nL+ eeeF++av++D Rs+k +lFe+av+il r+ gl+s+e ++k++++a+++
  CCD22450.1 803 LNYNLESLVGPKCGELKVSNPEAYSFNPKELLKSLCTIYINLCAEEEFIDAVSRDTRSFKVSLFERAVNILGRKiGLVSPEFCDKLMKFAKAA 895
                 ******************************************************************************************987 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.3   1.4e+04      52      64 ..     599     611 ..     591     613 .. 0.67
   2 ?   -3.0   0.0       1.4   8.6e+03       2      10 ..     881     889 ..     880     890 .. 0.83
   3 !   94.9   1.0   4.1e-31   2.5e-27       1      72 [.     912     983 ..     912     984 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.3
                 GGSEE-HHHHHHH CS
       U-box  52 dqlipnlelKekI 64 
                  ++++n+ lK kI
  CCD22450.1 599 PEIVSNPHLKSKI 611
                 4677788888877 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
                 SGGGB-TTT CS
       U-box   2 Pdefldpit 10 
                  +ef+d+++
  CCD22450.1 881 SPEFCDKLM 889
                 689****98 PP

  == domain 3  score: 94.9 bits;  conditional E-value: 4.1e-31
                 SSGGGB-TTT-SB-SSEEEETTT.EEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHHHHHHCT CS
       U-box   1 iPdefldpitlelmkdPvilpsg.vvvdrstiekhllsrdktdPftrepltqdqlipnlelKekIdefleekr 72 
                 +Pdefldp+++++mkdPv lp + v++drsti++hlls d+tdPf+r+pl+ +++i+n elK+kI+ f++ k+
  CCD22450.1 912 VPDEFLDPLMYTIMKDPVTLPTShVNIDRSTIKAHLLS-DSTDPFNRNPLKLQDVISNDELKKKIQDFIADKK 983
                 8**********************999************.******************************9986 PP

>> Peptidase_M32  Carboxypeptidase Taq (M32) metallopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   1.6e-05     0.093     113     183 ..     137     206 ..     130     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.6e-05
  Peptidase_M32 113 reandfalfepsLeevielkreiaelledlkkspYdaLldeyepgltvekidalFeelkealvpllkkike 183
                    +e +  + +e+ ++ ++e+++++ +    ++ + Y+++l  +e+ l++++   +F+++ ++l ++ +k++ 
     CCD22450.1 137 KEGSTMEFLENFFNALLEITKDKDHFN-INHSELYNTVLTVFEMFLSTKQAAGIFTKISNFLLDFNAKAND 206
                    677778889999***********6665.99***********************************777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (991 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 7132.46
//
Query:       CCD22451.1  [L=525]
Description: hypothetical protein NDAI_0A02940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-09   36.9   0.1    5.6e-09   35.9   0.1    1.5  1  R3H       R3H domain


Domain annotation for each model (and alignments):
>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   3.1e-13   5.6e-09       2      46 ..      55      99 ..      54     104 .. 0.96

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 3.1e-13
                HHHHHHHHHHHHHH-S--EEE-----SHHHHHHHHHHHHSSEEEE CS
         R3H  2 fllrvekklaefvkdtgrslefppmssyeRriiHelaeayglese 46
                f+ ++e+ + +f+++++ s+ + p++sy R++ H+la++++l+++
  CCD22451.1 55 FIIQLENSMLSFIQSNDVSFQLAPLNSYYRLLAHQLADYHNLKHF 99
                899****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1162  (0.0648112); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3691.66
//
Query:       CCD22452.1  [L=346]
Description: hypothetical protein NDAI_0A02950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.8e-33  114.4   0.4    1.5e-32  113.8   0.4    1.3  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.4   8.4e-37   1.5e-32       2     201 ..      88     279 ..      87     282 .. 0.91

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 8.4e-37
                  EEEEEESBTBTTCCTHHHHHHHHHHHH.HHHTTESEEEEESTSSSSS..HHHHHHHHHHHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl.lreekpdlvllaGDlvdrg..dlekellellaalvkypipvylllGNHe........gfeeellnkygyl 88 
                  +++++gD+H     gq++dll+l++   +++  ++l++  GD+vdrg  ++e+ +  l+a + +yp+++ +l+GNHe        gf++e+l+kyg+ 
   CCD22452.1  88 PVTICGDIH-----GQFHDLLELFKIGgPAPDTNYLFM--GDYVDRGyySVES-VSLLIALKCRYPDRITILRGNHEsrqitqvyGFYDECLRKYGS- 176
                  799******.....**********99953335678888..*******888888.8888**************************************9. PP

                  HHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHH CS
  Metallophos  89 gifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgde 182
                     +++w+ +++ f++lp+ +l+++  k+++lhGg sp  ++++d+++ ln+ +e+p++g   d++++d        ++   g+   +rg+g +fg++
   CCD22452.1 177 ---ANVWKLFTDLFDYLPITALVDN--KIFCLHGGlSPM-IETIDQIRDLNRLQEVPHEGpmcDLLWSD--------PDDRGGWGISPRGAGFTFGQD 260
                  ...8899******************..********4444.6****************************........666666666669********* PP

                  HHHHHHHHTTESEEEEESS CS
  Metallophos 183 aledllkkygvdlvisGHt 201
                    e +   +++ lv ++H+
   CCD22452.1 261 ISEQFNHTNDLELVARAHQ 279
                  ******************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2528.99
//
Query:       CCD22453.1  [L=289]
Description: hypothetical protein NDAI_0A02960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.041   13.9   0.3      0.088   12.8   0.1    1.8  2  DUF3425   Domain of unknown function (DUF3425)


Domain annotation for each model (and alignments):
>> DUF3425  Domain of unknown function (DUF3425)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   4.9e-06     0.088      42      83 ..      33      76 ..      23     136 .. 0.75
   2 ?   -2.3   0.0      0.23   4.2e+03     100     100 ..     244     244 ..     200     278 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.9e-06
     DUF3425 42 wpelRdrllr..afqeeeidedeffrdvvstlivWsieeeelet 83
                +p +Rd +l+  + q++ +d+def +++ +tli W  + ++ + 
  CCD22453.1 33 IPSIRDLVLEkqHRQKNITDTDEFTQRMEDTLIKWRPSASQNRG 76
                699*******85555666799**************744444333 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.23
     DUF3425 100 e 100
                 +
  CCD22453.1 244 Q 244
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2050.46
//
Query:       CCD22454.1  [L=25]
Description: hypothetical protein NDAI_0A02970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-10   41.2  26.3    1.3e-10   41.2  26.3    1.0  1  Ribosomal_L41  Ribosomal protein L41


Domain annotation for each model (and alignments):
>> Ribosomal_L41  Ribosomal protein L41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2  26.3   7.1e-15   1.3e-10       1      25 []       1      25 []       1      25 [] 0.99

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 7.1e-15
  Ribosomal_L41  1 MraKWrKKRmrRLKrKRRKmRqRSK 25
                   MraKWrKKR rRLKrKRRK+R+RSK
     CCD22454.1  1 MRAKWRKKRTRRLKRKRRKVRARSK 25
                   ************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (25 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 189.66
//
Query:       CCD22455.1  [L=324]
Description: hypothetical protein NDAI_0A02980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-54  185.1   1.0    1.8e-54  184.7   1.0    1.2  1  Mit_KHE1  Mitochondrial K+-H+ exchange-related


Domain annotation for each model (and alignments):
>> Mit_KHE1  Mitochondrial K+-H+ exchange-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.7   1.0     1e-58   1.8e-54       1     189 [.      51     251 ..      51     252 .. 0.92

  Alignments for each domain:
  == domain 1  score: 184.7 bits;  conditional E-value: 1e-58
    Mit_KHE1   1 rlillpittkrsliYcekseeilskssaskaeskekledkltnkaaktwaklekaeegwkkkivelgeklldripyeElaLksipsksak......... 90 
                 +li++pi ++rs+iY+++see+l+k+s+     + k+e+++ +k a++w+k++++++ ++++iv++++ +l++i ++E++L+sip ++++         
  CCD22455.1  51 KLIIIPIRKERSYIYYKHSEELLNKDSK-----ILKFENYTLTKGATLWRKIKDSPNIINRRIVDFVDFFLNQISWTETSLRSIPGERYIlkglrkmdk 144
                 79******************88888887.....99**************************************************76666777777788 PP

    Mit_KHE1  91 ........elesekekkkkekeelksiellyPssllseekvleelrklaeereelhkkrlilcllgiPltlpfalvPviPNlpffYlvyRayshwkAlk 181
                          +  ++ +++++k+ + +i+++yP++ l++++v ++ ++la+e+ ++h k++++c++giPlt+p++l+P+iPN+p+fYl+yRay+++kA+ 
  CCD22455.1 145 ktgmhnttAEYVKDITSNDKKSPMLPISVYYPNDQLTSKEVVRQAERLANEGLRYHFKYMWYCIIGIPLTFPLILIPIIPNVPGFYLTYRAYCNLKAYL 243
                 8888877644445567777889999************************************************************************** PP

    Mit_KHE1 182 gskhLesl 189
                 g+khL+ +
  CCD22455.1 244 GAKHLKAI 251
                 *****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2467.14
//
Query:       CCD22456.1  [L=437]
Description: hypothetical protein NDAI_0A02990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-85  285.2   0.1    7.9e-85  284.6   0.1    1.3  1  HMGL-like  HMGL-like
     0.0075   13.9   0.1       0.01   13.4   0.1    1.1  1  SidE       Dot/Icm substrate protein
  ------ inclusion threshold ------
       0.17   12.5   0.0       0.33   11.5   0.0    1.4  1  FliG_N     FliG N-terminal domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.6   0.1   1.3e-88   7.9e-85       2     264 .]      35     294 ..      34     294 .. 0.97

  Alignments for each domain:
  == domain 1  score: 284.6 bits;  conditional E-value: 1.3e-88
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B..--EE-SSHHHHHHHHH....TT-SEEEEEEES- CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkarilalvrarekdikaavealkgagakrvhvfiats 100
                 ++++d+tLR+Geq+++  +s+e+k++iakaLd++gvd+iE++ p+ase+++++++ai+k + ka+il+++r++ +d ++ave    +g++ v+v+i ts
  CCD22456.1  35 FQLIDSTLREGEQFANSFFSTEKKIEIAKALDDFGVDYIELTSPVASEQSRKDCEAICKLGLKAKILTHIRCHLDDARVAVE----TGVDGVDVVIGTS 129
                 789*******************************************************************************....************* PP

                 HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHHHHHHHHS-.GGGEEEEEB CS
   HMGL-like 101 elhlkaklkkdreevakkaeeavkaarslgkdvelsledasrtdleflaevveaaeeaGatriniaDtvGvltPneaaelisalkervkdkvilsvHcH 199
                 ++ ++++++kd++++ak+a e++++++s+g+++++s ed+ r+dl +l+++++++ ++G++r+ iaDtvG+++P++++el+++lk++v+  +++++H+H
  CCD22456.1 130 KFLRQYSHGKDMNYIAKSAIEVIEFVKSKGIEIRFSSEDSFRSDLVDLLNIYKTVSKIGVNRVGIADTVGCANPRQVYELVRTLKTVVN--CDIECHFH 226
                 *****************************************************************************************..******** PP

                 -TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT...-B----HHHHHHHHHHH CS
   HMGL-like 200 ndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealg...vdtgldlqklrsiaalv 264
                 nd+G+A++n++ A+eaGa+ +d++v+G+Ger+G ++l  l+a + ++    v+++++l+k+r++++lv
  CCD22456.1 227 NDTGCAIGNAYCALEAGARLIDVCVLGIGERNGIVPLSGLMARMIVAApkyVKSKYKLHKIRDLENLV 294
                 *************************************6665555555449***************997 PP

>> SidE  Dot/Icm substrate protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.7e-06      0.01    1170    1244 ..     356     426 ..     346     433 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-06
        SidE 1170 eklekklkkleeklydaylvevtkeisalekeksknltdvkkmisklndrlaeieqlrqekikkhGeskdPldls 1244
                  +++++++ +l+  l d  + evt +i+ l + ++ n++dv ++i +++ ++++  ++   k ++  +s++Pld++
  CCD22456.1  356 NAIKSRVDQLNLALTDDQVKEVTTKIKNLGDVRPLNIDDVDSIIKDFHTTVNT-PMM---KARRMSDSEEPLDIT 426 
                  57889999**************************************9987654.455...556667899***986 PP

>> FliG_N  FliG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.5e-05      0.33      26      63 ..     368     408 ..     360     421 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.5e-05
                 TSXHHHHHHHHHHHHCHTTXXHH...HHHHHHHHHHHHHHC CS
      FliG_N  26 hLdeeeiekltkeiaslksvske...eveaVleefleelea 63 
                  L++++++++t++i +l++v +    +v++++++f++++++
  CCD22456.1 368 ALTDDQVKEVTTKIKNLGDVRPLnidDVDSIIKDFHTTVNT 408
                 699****************998544489999****998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3131.32
//
Query:       CCD22457.1  [L=106]
Description: hypothetical protein NDAI_0A03000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-23   83.7  13.4    1.2e-23   83.5  13.4    1.1  1  Ribosomal_60s  60s Acidic ribosomal protein
  ------ inclusion threshold ------
       0.11   12.4   0.5       0.13   12.2   0.5    1.1  1  Sigma70_ner    Sigma-70, non-essential region


Domain annotation for each model (and alignments):
>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5  13.4   1.3e-27   1.2e-23       2      88 .]      20     105 ..      19     105 .. 0.91

  Alignments for each domain:
  == domain 1  score: 83.5 bits;  conditional E-value: 1.3e-27
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS--STTT CS
  Ribosomal_60s   2 ptaenikkvlkaagveveaarvkllvkalegkdieellangaaklaaaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedddmGfgLF 88 
                    +t+en+ +v+kaag+ ve++++++ +kalegkd++e+l+  ++++ aa+aaaa++aaa+++aa ++++++e+ee Ee+d dmGfgLF
     CCD22457.1  20 ITSENLLSVTKAAGASVENVWADVYAKALEGKDLKEILSGFHNAGPAAGAAAASGAAASGEAATEAAAEEEAEE-EESDADMGFGLF 105
                    9*****************************************99988888888888888888888888888777.8*********** PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   1.4e-05      0.13      20      62 ..      51      97 ..      35     102 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
  Sigma70_ner 20 irLrdiidGflD.................eeeeeeeeeeeedeeeeeeeedddeeesese 62
                   L++i++Gf +                 e        ++ ++++eee+e     e+es+
   CCD22457.1 51 KDLKEILSGFHNagpaagaaaasgaaasgE--------AATEAAAEEEAE-----EEESD 97
                 579*********999887766544322110........111111111111.....11111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 839.23
//
Query:       CCD22458.1  [L=521]
Description: hypothetical protein NDAI_0A03010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3683.05
//
Query:       CCD22459.1  [L=413]
Description: hypothetical protein NDAI_0A03020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-48  164.7  35.3    9.3e-26   90.6   8.8    2.2  2  Na_Ca_ex         Sodium/calcium exchanger protein
  ------ inclusion threshold ------
      0.012   15.9   0.0       0.12   12.7   0.0    2.8  2  YWFCY            YWFCY protein
        0.1   12.8   9.3          2    8.6   7.1    3.2  2  Phage_holin_4_1  Bacteriophage holin family


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   8.8   1.6e-29   9.3e-26       3     150 ..      67     225 ..      65     226 .. 0.92
   2 !   80.2  18.5   2.5e-26   1.5e-22       2     149 ..     259     401 ..     258     403 .. 0.89

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 1.6e-29
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECCH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslkl 101
                 + +fi+ +l+i++la++l  ++ee+a   +  gs++G +l+A+++++ Eli+siia+++g+v+++ +++lGs + nlllv+G+++++g+  +++ + k+
  CCD22459.1  67 TYVFIFNFLAIIPLAAILAYATEELA---DKAGSTVGGLLNATFGNAVELIVSIIALKEGQVRIVQASMLGSLLSNLLLVLGFCFVFGG--YNRIQQKF 160
                 679***********************...8*********************************************************99..55566699 PP

                 HHHHHHHHHHHHHHHHHHTCHHHHH................HTEEHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 102 dlgllllvallllllvlllllplfv................pgrltvleglvllllYalylvlsl 150
                 +  + ++++ ll ++++ ll+p+++                  +l++ ++++lll+Y+++l+++l
  CCD22459.1 161 NQTAAQTMSSLLAISCASLLIPAAFkatlpegkedwivnekILELSRGTSIILLLVYVFFLAFQL 225
                 996666666666677888899**99****************9*********************97 PP

  == domain 2  score: 80.2 bits;  conditional E-value: 2.5e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCECC CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdseslk 100
                 ++++++ ++++is++ad+lv ++++i++s+g+s++++Gl+++++++++ E+++s+ +a+++++dla++ ++Gs +++ l+v ++++l+g+  +d   ++
  CCD22459.1 259 SLLFLLGATVVISICADYLVGTIDNIVESTGLSKTFIGLIVIPIVGNAAEHVTSVLVAMKDKMDLALSVAIGSSLQISLFVTPFMVLVGW-MIDV-PMT 355
                 6789999*********************************************************************************99.6664.568 PP

                 HHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex 101 ldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvls 149
                 l+++  + +a l+++++l  +l+l+  g+ ++leg++ l++Y+l+++ +
  CCD22459.1 356 LNFST-FETATLFIAVFLSNYLILD--GESNWLEGVMSLSMYLLIALAF 401
                 99955.5555556666666677774..****************998765 PP

>> YWFCY  YWFCY protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       0.7   4.2e+03      26      41 ..      65      80 ..      63      85 .. 0.79
   2 ?   12.7   0.0   2.1e-05      0.12      10      41 ..     200     231 ..     194     245 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.7
       YWFCY 26 ihfYwyCyeafeewgl 41
                 h Y++ +++++ + l
  CCD22459.1 65 SHTYVFIFNFLAIIPL 80
                599***9999887665 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.1e-05
       YWFCY  10 rKIlDftRliSilllvihfYwyCyeafeewgl 41 
                  KIl++ R  Si+ll++ ++   +++ ++ +l
  CCD22459.1 200 EKILELSRGTSIILLLVYVFFLAFQLGSHHDL 231
                 5****************999999987766665 PP

>> Phage_holin_4_1  Bacteriophage holin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.62   3.7e+03      73      85 ..     209     223 ..     165     232 .. 0.66
   2 ?    8.6   7.1   0.00033         2      11      88 ..     295     377 ..     258     378 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.62
  Phage_holin_4_1  73 t..lrtlviifyian 85 
                      t  +  lv++f++a 
       CCD22459.1 209 TsiILLLVYVFFLAF 223
                      133666666666655 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00033
  Phage_holin_4_1  11 dklltallllmviDyltGllaaivegk...lsskkglkgiikkvlilllvlvahllDvllgknlet..lrtlviifyianeli 88 
                        l+ + ++ ++ + +t +l+a++++    ls ++g    i   ++ ++vlv+ ++Dv +  n++t  ++tl+i  +++n li
       CCD22459.1 295 IGLIVIPIVGNAAEHVTSVLVAMKDKMdlaLSVAIGSSLQISLFVTPFMVLVGWMIDVPMTLNFSTfeTATLFIAVFLSNYLI 377
                      5677888899999***********777778******************************99998557999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3135.76
//
Query:       CCD22460.1  [L=321]
Description: hypothetical protein NDAI_0A03030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-11   42.0   0.2    1.2e-10   41.2   0.2    1.5  1  Cyclin_N     Cyclin, N-terminal domain
  ------ inclusion threshold ------
       0.45   10.8   8.4        2.8    8.3   0.2    2.6  2  Pec_lyase_N  Pectate lyase, N terminus


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.2   1.4e-14   1.2e-10      21     126 ..      40     152 ..      22     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 1.4e-14
                 TCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CC........CHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHH CS
    Cyclin_N  21 dqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkd........klqlvgatcLllAaKveeisppkledlvyitdeafteeei 111
                 d++p+ + +  ++l ++++++ +  ++++ tl +a +yl+R  s+    k+          + ++++cL+l++K+  +  +k +d+   +++ ft +ei
  CCD22460.1  40 DNRPN-KLRSLPTLTNFILDIISTSNVESPTLSIATVYLERIRSTLAQDKNafnqlknfCNHQLFLACLMLSSKFSSDLHVKTSDWSRFANGLFTLKEI 137
                 55665.44677899*****************************977777778898888877889*********************************** PP

                 HHHHHHHHHHTTT-- CS
    Cyclin_N 112 lemErliLetLnfdl 126
                 +++E +iL+ +++ l
  CCD22460.1 138 NTAEITILDLFHYHL 152
                 *********999987 PP

>> Pec_lyase_N  Pectate lyase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.2   0.00031       2.8      18      44 ..     160     186 ..     155     225 .. 0.75
   2 ?    5.0   3.0    0.0031        28      18      56 .]     274     312 ..     271     312 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00031
  Pec_lyase_N  18 kaaleaYepnPleVtdhFneevneale 44 
                  ++a+e+Y pnP++V    n++ +  ++
   CCD22460.1 160 AKAIESYRPNPFSVALITNKNNSMHVQ 186
                  6799**********9888877666555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0031
  Pec_lyase_N  18 kaaleaYepnPleVtdh..FneevnealegtketnstRRsL 56 
                  +++l +Y++ P  +t++  Fn++ n+  ++ ++ n+  RsL
   CCD22460.1 274 QQMLLSYKNSPSFITEAstFNNNNNN--NNYSNSNDNSRSL 312
                  78999*********975448888888..4444577777876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1008  (0.0562218); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2432.28
//
Query:       CCD22461.1  [L=842]
Description: hypothetical protein NDAI_0A03040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-98  325.5   0.0      4e-48  163.2   0.0    2.6  2  AAA              ATPase family associated with various cellul
    2.9e-23   81.4   4.6    1.2e-11   44.2   0.4    2.8  2  AAA_lid_3        AAA+ lid domain
    5.3e-17   61.8   0.1    1.7e-16   60.2   0.1    2.0  1  CDC48_N          Cell division protein 48 (CDC48), N-terminal
    9.4e-14   51.5   0.0    1.6e-05   24.7   0.0    2.9  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.7e-13   51.1   0.2    4.8e-07   30.0   0.0    3.2  2  AAA_2            AAA domain (Cdc48 subfamily)
    4.2e-13   50.0   0.2    0.00014   22.3   0.0    4.8  3  AAA_16           AAA ATPase domain
    9.6e-12   45.1   0.4    8.3e-06   25.8   0.1    3.9  2  AAA_5            AAA domain (dynein-related subfamily)
    4.4e-11   43.1   0.0    2.1e-05   24.7   0.0    2.8  2  AAA_33           AAA domain
    3.1e-09   36.5   0.0     0.0016   17.7   0.0    2.4  2  TIP49            TIP49 P-loop domain
    2.7e-08   34.2   2.6      0.072   13.4   0.1    4.4  3  AAA_22           AAA domain
    1.3e-07   31.3   0.1    3.1e-07   30.1   0.1    1.7  1  CDC48_2          Cell division protein 48 (CDC48), domain 2
    2.4e-07   30.7   0.8    3.1e-05   23.9   0.1    3.0  2  Vps4_C           Vps4 C terminal oligomerisation domain
    3.1e-07   30.7   0.0      0.012   16.0   0.0    2.9  2  RNA_helicase     RNA helicase
    3.3e-07   29.9   0.3      0.026   13.9   0.0    2.6  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    5.4e-07   29.7   0.0      0.025   14.6   0.0    2.9  2  AAA_14           AAA domain
      1e-06   28.6   0.0      0.032   14.0   0.0    2.9  2  IstB_IS21        IstB-like ATP binding protein
    1.4e-06   27.9   1.3       0.28   10.5   0.0    3.6  3  ATPase           KaiC
    4.4e-06   26.5   0.1       0.09   12.5   0.0    3.3  2  AAA_24           AAA domain
    7.5e-06   26.5   0.0       0.24   12.0   0.0    3.0  2  AAA_18           AAA domain
    8.7e-06   25.7   0.0      0.046   13.6   0.0    3.2  3  Bac_DnaA         Bacterial dnaA  protein
      1e-05   25.2   0.1      0.086   12.3   0.0    2.8  2  AAA_7            P-loop containing dynein motor region
    1.2e-05   25.9   0.3       0.11   13.0   0.0    4.3  3  ABC_tran         ABC transporter
    1.3e-05   24.9   4.6      0.062   12.9   0.3    4.0  3  AAA_25           AAA domain
    1.5e-05   24.8   0.1       0.18   11.5   0.0    3.5  2  Sigma54_activat  Sigma-54 interaction domain
    3.7e-05   23.0   0.1       0.15   11.1   0.0    2.4  2  Parvo_NS1        Parvovirus non-structural protein NS1
      5e-05   22.8   0.5       0.19   11.1   0.1    2.4  2  PhoH             PhoH-like protein
      5e-05   23.6   0.0       0.57   10.4   0.0    2.8  2  AAA_28           AAA domain
    8.4e-05   21.9   0.0      0.097   11.8   0.0    2.9  2  DUF815           Protein of unknown function (DUF815)
    0.00016   21.6   0.0       0.75    9.7   0.0    2.6  2  AAA_3            ATPase family associated with various cellul
    0.00021   21.4   1.4       0.14   12.1   0.0    3.2  3  ResIII           Type III restriction enzyme, res subunit
    0.00032   20.7   0.0       0.54   10.3   0.0    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    0.00055   20.4   3.5       0.57   10.6   0.0    3.8  2  AAA_17           AAA domain
    0.00058   19.2   0.0        1.1    8.5   0.0    2.6  2  DUF2075          Uncharacterized conserved protein (DUF2075)
    0.00099   19.1   0.1        2.3    8.1   0.0    3.4  3  NACHT            NACHT domain
     0.0012   18.6   0.3        2.3    7.9   0.1    2.7  2  AAA_30           AAA domain
     0.0029   17.6   1.3        2.6    7.9   0.0    3.9  2  ATPase_2         ATPase domain predominantly from Archaea
     0.0031   17.4   8.0       0.98    9.2   0.0    3.3  2  AAA_11           AAA domain
     0.0032   17.8   1.2        2.6    8.4   0.0    3.3  2  AAA_19           AAA domain
  ------ inclusion threshold ------
      0.013   15.6   0.0        1.7    8.8   0.0    2.7  2  Sigma54_activ_2  Sigma-54 interaction domain
      0.018   14.4   0.1        2.3    7.6   0.0    2.3  2  IPT              Isopentenyl transferase
      0.019   14.3   0.6        7.5    5.8   0.0    3.2  3  Zeta_toxin       Zeta toxin
       0.03   13.5   0.0        5.4    6.1   0.0    2.5  2  NB-ARC           NB-ARC domain
      0.033   14.1   1.7        8.3    6.3   0.0    4.3  4  NTPase_1         NTPase
      0.038   13.2   0.2        2.2    7.4   0.0    2.9  2  KAP_NTPase       KAP family P-loop domain
      0.045   13.4   0.0        2.7    7.6   0.0    3.1  2  Zot              Zonular occludens toxin (Zot)
      0.047   13.4   0.0          8    6.1   0.0    2.9  2  Cytidylate_kin   Cytidylate kinase
      0.054   13.0   0.0       0.12   11.8   0.0    1.5  1  UFD1             Ubiquitin fusion degradation protein UFD1
       0.11   11.5   0.4        5.3    5.9   0.0    2.6  3  AAA_6            Hydrolytic ATP binding site of dynein motor 
       0.12   12.1   0.0         19    4.9   0.0    3.4  4  Viral_helicase1  Viral (Superfamily 1) RNA helicase
        1.7    9.4   4.3         21    5.9   2.9    2.8  2  PTS_IIB          PTS system, Lactose/Cellobiose specific IIB 


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.2   0.0   1.1e-50     4e-48       1     131 [.     257     386 ..     257     387 .. 0.97
   2 !  159.8   0.0   1.3e-49   4.6e-47       1     132 []     530     663 ..     530     663 .. 0.97

  Alignments for each domain:
  == domain 1  score: 163.2 bits;  conditional E-value: 1.1e-50
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vl+yGppGtGKTl+a+ava+e+g+ f+ i+g+e++sk+ gese+++r+ f+ea+++a p i+fiDEid++a++r++++ e+e+rvv+qLlt +dg+k++
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKNA-PAIIFIDEIDSIAPKRDKTNGEVERRVVSQLLTLMDGMKTR 354
                 79******************************************************9.****************************************7 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                  s+v+vi+atnrp+++dpal+r gRfdr++ i+
  CCD22461.1 355 -SNVVVIAATNRPNSIDPALRRfGRFDREVDIG 386
                 .66*************************99875 PP

  == domain 2  score: 159.8 bits;  conditional E-value: 1.3e-49
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vl+yGppGtGKTllakava+e++++f++++g+ells++ gese++ir++f++a++ a p+++f+DE+d++ak+r    g++ + ++rvvnqLlte+dg+
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIFDKARAAA-PTVVFLDELDSIAKARggsMGDAGGASDRVVNQLLTEMDGM 627
                 79******************************************************9.****************998888999**************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 ++k++ v+vigatnrpd++dpa+lr gR+d+ i+++l
  CCD22461.1 628 NTKKN-VFVIGATNRPDQIDPAILRpGRLDQLIYVPL 663
                 **755.***************************9985 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.4   3.4e-14   1.2e-11       1      41 [.     409     449 ..     409     455 .. 0.92
   2 !   38.0   0.3     3e-12   1.1e-09       3      41 ..     687     725 ..     685     733 .. 0.89

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 3.4e-14
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitme 41 
                 dvdl+ LA +T+Gy+G D a+lc eAa+  +r++++ i+ e
  CCD22461.1 409 DVDLEYLANETHGYVGSDVASLCSEAAMQQIREKMDLIDLE 449
                 9***********************************98754 PP

  == domain 2  score: 38.0 bits;  conditional E-value: 3e-12
   AAA_lid_3   3 dlkeLAerTeGySGADlaalcreAallAlrrgikeitme 41 
                  l+++A++++G+SGADl+ ++++Aa  A++++i++ +++
  CCD22461.1 687 ELEAIAKASQGFSGADLSYIVQRAAKFAIKESIEAQKEK 725
                 589*****************************9987665 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.1   4.7e-19   1.7e-16       2      84 ..      42     122 ..      41     124 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 4.7e-19
                 EEEECCS.S-CSSTTEEEE-HHHHHHHTS-TTSEEEEEC.CCC.EEEEEEEBSTTSTTTTEEEE-HHHHHHHT--TTEEEEEEEE- CS
     CDC48_N   2 LrVaeap.qedvgrgivridpedmeelglepgdvveieg.krk.TvaivwpaepedegkgiIrmdgvtRknagvsiGdkVtVrkae 84 
                 L V++a  +   +++i+++++++++ l+l++gd+v ++g krk Tv iv+ +++  e +g+ ++++++R+n+++++Gd Vt++++ 
  CCD22461.1  42 LLVDDATnD---DNSIIALNSNTLDTLELFRGDTVLVKGkKRKdTVLIVLVDDEV-E-DGSCKLNRIVRNNLNIRLGDLVTIHPCP 122
                 789999977...***************************9999*********987.3.7************************996 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   4.3e-08   1.6e-05      36      99 ..     257     328 ..     251     379 .. 0.79
   2 !   23.4   0.0   1.1e-07   4.1e-05      35      96 ..     529     598 ..     499     610 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 4.3e-08
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvl......ekagdlaalltnleek..dvlfideihrlsra 99 
                 vl+yGpPG Gkt +a+ +a+e g+ +    gP +      e +++l   + + e++   ++fidei  ++++
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANETGAFFFLINGPEVmskmagESESNLRKAFEEAEKNapAIIFIDEIDSIAPK 328
                 9*******************************7633222223345555555555442369******988765 PP

  == domain 2  score: 23.4 bits;  conditional E-value: 1.1e-07
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvl......ekagdlaalltnleek..dvlfideihrl 96 
                  vl+yGpPG Gkt lak +a+e+ +++ +  gP l      e ++++  ++ + ++    v+f+de+  +
  CCD22461.1 529 GVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELlsmwygESESNIRDIFDKARAAapTVVFLDELDSI 598
                 69*******************************8744444445566666665554331257777776655 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.3e-09   4.8e-07       6     107 ..     257     352 ..     252     365 .. 0.85
   2 !   17.4   0.0   1.1e-05    0.0038       6     105 ..     530     626 ..     525     636 .. 0.76

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.3e-09
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG----.---------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk.essgadvSregVqrdLLq 101
                 +l+ gp g+Gkt++a+a+a+   +     +  ++  e++     +   +++   +++  +ae++   i+++DEid i+pk ++++ +v r  V+  LL 
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANETGA----FFFLINGPEVMS----KMAGESESNLRKAFEEAEKNApaIIFIDEIDSIAPKrDKTNGEVER-RVVSQLLT 346
                 6899*****************995....99**********....77778888888888888888888*************6556666655.68888999 PP

                 HHH--E CS
       AAA_2 102 ileggt 107
                 +++g +
  CCD22461.1 347 LMDGMK 352
                 *99865 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.1e-05
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----...---------HHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk...essgadvSregVqrdL 99 
                 +l+ gp g+Gkt+laka+a   ++    ++i +   ell     e+e+ +     ++    +a+   +v+lDE+d i++    +   a   ++ V++ L
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEVSA----NFISVKGPELLSmwYGESESNIRDIFDKA----RAAAPTVVFLDELDSIAKArggSMGDAGGASDRVVNQL 620
                 799******************996....99999999999955455555555555444....345567************99543344445567899999 PP

                 HHHHH- CS
       AAA_2 100 Lqileg 105
                 L  ++g
  CCD22461.1 621 LTEMDG 626
                 988887 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   8.8e-06    0.0031      19     138 ..     249     358 ..     227     360 .. 0.64
   2 !   22.3   0.0     4e-07   0.00014      25     127 ..     528     624 ..     519     636 .. 0.65
   3 ?   -1.2   0.1       6.4   2.3e+03      73     124 ..     707     771 ..     663     814 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 8.8e-06
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeas 117
                 +    p+ vl +G++G+GK+ ++r++++   ++g++f+  +  +      +s  a    ++ l ++ ++++++a +  + +++++ +   ++  g+ ++
  CCD22461.1 249 IGIKPPRGVLMYGPPGTGKTLMARAVAN---ETGAFFFLINGPEV-----MSKMAGES-ESNLRKAFEEAEKNAPAIIFIDEIDSIAPKRDKTNGEVER 338
                 44455699*******************6...66666755555555.....22233333.3355555555555555555555555555555555555557 PP

      AAA_16 118 rllellkrllallsrderplv 138
                 r+  +l  l++ +++++  +v
  CCD22461.1 339 RVVSQLLTLMDGMKTRSN-VV 358
                 777777777777777554.44 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 4e-07
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala....avpelagaeasrl 119
                   vl++G++G+GK+ l+++++++++++   f++ k  +l     +s++     + + +r++ d+a++a++       ++++a     +  +ag ++ r+
  CCD22461.1 528 KGVLFYGPPGTGKTLLAKAVATEVSAN---FISVKGPEL-----LSMWYGES-E-SNIRDIFDKARAAAPTVVFLDELDSIAkargGSMGDAGGASDRV 616
                 689**********************99...999999999.....45544444.3.77788888866655555555544444455443333333333444 PP

      AAA_16 120 lellkrll 127
                  ++l   +
  CCD22461.1 617 VNQLLTEM 624
                 44444444 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 6.4
      AAA_16  73 aqalareellrqlldeaesaeleawrekleeala..............avpelagaeasrllellk 124
                 +q +a+  + + +++++e+ +l   +e  e++++              + ++++   ++++++++k
  CCD22461.1 707 VQRAAKFAIKESIEAQKEK-LLKKEQEDAEAEANgmvvdkenedekevEEDPVPYITKEHFAQAMK 771
                 4444443333333333222.3333333333333334444333333333222222222244444444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   2.3e-08   8.3e-06       1     136 [.     256     375 ..     256     377 .. 0.80
   2 !   14.1   0.0    0.0001     0.036       2     124 ..     530     643 ..     529     651 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.3e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.....G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.....egeilvlDEveraesevlnsLlslleerrl 94 
                 +vl+ GppGtgK+ +a+ +a  +++ ++ +++++ +++     + ++             +a++      ++i+++DE++ + ++  ++ +   e+r +
  CCD22461.1 256 GVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNL------------RKAFEeaeknAPAIIFIDEIDSIAPKR-DKTNGEVERRVV 341
                 59********************************9987555544444............333333336789*********999874.677787788877 PP

                 E..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  95 lleeggelvkaknddllerfrviatanpldrslnelspalrs 136
                 +  ++ +l++  ++   +++ via++n+++    +++palr+
  CCD22461.1 342 S--QLLTLMDGMKT--RSNVVVIAATNRPN----SIDPALRR 375
                 7..88888877763..4559*******999....99999986 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 0.0001
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SS CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleegg 100
                 vl  GppGtgK+ la+ +a  + +++  v +++      l+  +   +++   +d   +  a  + +++lDE++ + ++  +s+        + ++++ 
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEVSANFISVKGPE------LLSMWY-GESESNIRDIFDKARAAAPTVVFLDELDSIAKARGGSMGDAGGASDRVVNQLL 621
                 899***************999988888888776......333333.23333333333333344677777777777777666666666666666666666 PP

                 SEEE---......-EEEEEESS-- CS
       AAA_5 101 elvkaknddllerfrviatanpld 124
                 ++++  n+   +++ vi+++n++d
  CCD22461.1 622 TEMDGMNT--KKNVFVIGATNRPD 643
                 66666653..34466666666666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.8e-08   2.1e-05       2      47 ..     257     330 ..     257     390 .. 0.69
   2 !   15.4   0.0   4.3e-05     0.015       2      52 ..     530     585 ..     530     640 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 5.8e-08
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt..........................d 47 
                 vl+ G+pG+GK+  a+ +++++g  ++l++ ++++++++g+ + +++                          d
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANETGafFFLINGPEVMSKMAGESESNLRkafeeaeknapaiifideidsiapkrD 330
                 79**********************999************96665555444455555555555555555555542 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 4.3e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt...dytrvl 52 
                 vl+ G+pG+GK+ la+ ++ +    ++ +  ++l+++ +g+ + +++   d +r++
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEVSanFISVKGPELLSMWYGESESNIRdifDKARAA 585
                 799****************9998778888888888888886666555333333444 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   4.4e-06    0.0016      51     106 ..     255     305 ..     245     359 .. 0.81
   2 !   16.2   0.0   1.3e-05    0.0047      50      95 ..     527     570 ..     521     583 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.4e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqalrks 106
                 r+vL+ Gp+gtGkt +a a+++e g    f  ++g ev s     +e    +lrk+
  CCD22461.1 255 RGVLMYGPPGTGKTLMARAVANETG--AFFFLINGPEVMSKMAGESES---NLRKA 305
                 89*********************99..78999*******998877774...45554 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.3e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkk 95 
                  ++vL+ Gp+gtGkt la a++ e++    f++++g e+ s+    
  CCD22461.1 527 SKGVLFYGPPGTGKTLLAKAVATEVS--ANFISVKGPELLSMWYGE 570
                 589**********************9..679999999999876555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1    0.0002     0.072       9      51 ..     258     291 ..     252     365 .. 0.67
   2 !   13.3   0.0   0.00021     0.075       9      41 ..     531     554 ..     527     585 .. 0.72
   3 ?   -0.9   0.0       5.1   1.8e+03      84     105 ..     580     602 ..     568     639 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.0002
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst 51 
                 + +G++GtGKT+ +r ++++          ++ +++++ p+ +
  CCD22461.1 258 LMYGPPGTGKTLMARAVANET---------GAFFFLINGPEVM 291
                 679***************998.........5666655555555 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00021
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpe 41 
                 + +G++GtGKT+l++ ++ +          ++ 
  CCD22461.1 531 LFYGPPGTGKTLLAKAVATEV---------SAN 554
                 679**************9987.........333 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 5.1
      AAA_22  84 qalraravielliiDEaqhlr..s 105
                 + +ra+a + ++ +DE + +   +
  CCD22461.1 580 DKARAAA-PTVVFLDELDSIAkaR 602
                 3344444.499******9986551 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1   8.7e-10   3.1e-07       3      62 ..     143     205 ..     141     207 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 8.7e-10
                 SCCCCH.HHHCCCTT..EEE-TTEEEEECCTCCCEEEEEEEECCCCSCEEECTSCCEEESTTC CS
     CDC48_2   3 dgdema.ylkrqFlg..rpvtkGdlvvfefkgqeiklvVvstePkgpvgitetTeielgtkpv 62 
                  g++++  lk +F    rpv kGd + ++  +++++++Vv++eP +  ++  +T i+ + +p 
  CCD22461.1 143 TGNLFDvFLKPYFVEayRPVRKGDHFIVRGGMRQVEFKVVDVEPDEYGVVAQDTVIHWEGEPI 205
                 6899999*************************************************9998885 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.14        50      12      44 ..     441     478 ..     431     497 .. 0.73
   2 !   23.9   0.1   8.6e-08   3.1e-05      26      59 ..     758     791 ..     746     792 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.14
      Vps4_C  12 iemtwmdip.....sdkllePpvtlkDflkalkkarpt 44 
                 ++m + d++     ++ l    vt++ f+ al ++ p+
  CCD22461.1 441 EKMDLIDLEedeidAEVLDSLGVTMDNFKFALGNSNPS 478
                 5677777665555244455559*************998 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 8.6e-08
      Vps4_C  26 ePpvtlkDflkalkkarptVskeDLekheeFTke 59 
                  P +t ++f +a+k+a+++Vs+++L+++e + ++
  CCD22461.1 758 VPYITKEHFAQAMKTAKKSVSEAELRRYEAYSQQ 791
                 589***************************9987 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0    0.0008      0.29       1      29 [.     257     285 ..     257     310 .. 0.79
   2 !   16.0   0.0   3.4e-05     0.012       1      45 [.     530     577 ..     530     608 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0008
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklk 29 
                   +++yGp+g+GK+++a+ +a++    + l+
    CCD22461.1 257 VLMYGPPGTGKTLMARAVANETGAFFFLI 285
                   679**************999877655444 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 3.4e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...klkkkdsvysrnpeddfwd 45 
                   +++yGp+g+GK++lak +a++++ ++   k ++  s++++++e+++ d
    CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEVSANFisvKGPELLSMWYGESESNIRD 577
                   689*******************98776665555555555555555444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   0.00012     0.043      25      42 ..     257     274 ..     248     278 .. 0.89
   2 !   13.9   0.0   7.1e-05     0.026      23      43 ..     528     548 ..     518     555 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00012
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   +l++GppG+GKt++a+++
    CCD22461.1 257 VLMYGPPGTGKTLMARAV 274
                   89*************987 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 7.1e-05
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlp 43 
                     +l++GppG+GKt+lak+++
    CCD22461.1 528 KGVLFYGPPGTGKTLLAKAVA 548
                   569***************986 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.9e-05     0.025       5      78 ..     257     327 ..     254     367 .. 0.72
   2 !   11.9   0.0   0.00049      0.17       5      78 ..     530     600 ..     527     663 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.9e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe.kllelileklkeekktylflDEiqevpe 78 
                 +++ G+  +GKT +++ +++e       ++ in  +   k++ ++e +l +++ e  +++   ++f+DEi  +  
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANETG---AFFFLINGPEVMSKMAGESEsNLRKAFEEA-EKNAPAIIFIDEIDSIAP 327
                 6789999************9988...888888988888877666662445555554.455999*******99843 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00049
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpe 78 
                 ++  G+  +GKT l+k ++ e      +++ ++  +     + ++e++++ i++k+++   t++flDE   + +
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEVS---ANFISVKGPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSIAK 600
                 6678999*********9997777...77777777776666666666677777777555689*******998844 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00053      0.19      48      70 ..     255     277 ..     244     359 .. 0.84
   2 !   14.0   0.0   8.9e-05     0.032      48      77 ..     528     557 ..     521     594 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00053
   IstB_IS21  48 enivllGpsGvGKshlaialgve 70 
                  ++++ Gp+G+GK+ +a a++ e
  CCD22461.1 255 RGVLMYGPPGTGKTLMARAVANE 277
                 57899**************9876 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 8.9e-05
   IstB_IS21  48 enivllGpsGvGKshlaialgveavragls 77 
                 +++++ Gp+G+GK+ la a+++e  ++ +s
  CCD22461.1 528 KGVLFYGPPGTGKTLLAKAVATEVSANFIS 557
                 6799****************9987666555 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1    0.0017      0.59      15      37 ..     250     272 ..     244     280 .. 0.86
   2 ?    4.4   0.1     0.056        20     121     156 ..     315     353 ..     287     376 .. 0.64
   3 !   10.5   0.0   0.00078      0.28       9      38 ..     517     546 ..     494     555 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0017
      ATPase  15 GipegrvvlitGepGtGKtifal 37 
                 Gi   r vl++G pGtGKt++a 
  CCD22461.1 250 GIKPPRGVLMYGPPGTGKTLMAR 272
                 77888899*************96 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.056
      ATPase 121 krvviDsitgl...ayeekeavaReilrqlvrvlkklgv 156
                   + iD i+++     +++ +v R+ + ql++ + ++++
  CCD22461.1 315 AIIFIDEIDSIapkRDKTNGEVERRVVSQLLTLMDGMKT 353
                 44555555555321566667789***********88765 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00078
      ATPase   9 DeilkgGipegrvvlitGepGtGKtifalq 38 
                 D+ +k G+   + vl +G pGtGKt++a+ 
  CCD22461.1 517 DQYTKFGLAPSKGVLFYGPPGTGKTLLAKA 546
                 44444999999****************975 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00025      0.09       5      77 ..     257     325 ..     254     371 .. 0.80
   2 !   10.2   0.0    0.0012      0.44       5      23 ..     530     550 ..     527     615 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00025
      AAA_24   5 iliyGpsgiGKTtlakel.gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDtidel 77 
                 +l+yGp+g+GKT +a+    ++ +f+ + +G   +    ++   s  +++++++e +++ +   +++iD id +
  CCD22461.1 257 VLMYGPPGTGKTLMARAVaNETGAFFFLINGPEVMSKMAGE---SESNLRKAFEEAEKNAP--AIIFIDEIDSI 325
                 799*************9984444555555556666666665...67778888887766666..67888888765 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0012
      AAA_24   5 iliyGpsgiGKTtlakel..g 23 
                 +l yGp+g+GKT lak    +
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVatE 550
                 789************988543 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0    0.0011       0.4       2      25 ..     258     295 ..     257     364 .. 0.64
   2 !   12.0   0.0   0.00066      0.24       1      34 [.     530     581 ..     530     635 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0011
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf.............g 25 
                 l  G+pG+GKt +a+++++++ +f              
  CCD22461.1 258 LMYGPPGTGKTLMARAVANETgAFfflingpevmskmA 295
                 678***************99855576666543333330 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00066
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.................gvnlrdvake 34 
                 +l  G+pG+GKt lak+++ +  ++                   n+rd++ +
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEVsANfisvkgpellsmwygesESNIRDIFDK 581
                 6789**************9886333466665555555555555555555555 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   0.00013     0.046      37     198 ..     257     419 ..     251     441 .. 0.75
   2 ?    7.3   0.0     0.011       3.9      37      64 ..     530     557 ..     524     574 .. 0.90
   3 ?   -0.1   0.1         2   7.1e+02      59      92 ..     750     783 ..     742     790 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00013
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHTT-.SEEEEE-GGGGTT-H.HHHHH........HHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklrkv.DvLliDDiqflagke.ktqee........lfhtfna 125
                 +++yg+ G Gkt + +a++ne+      +    +++ e +++++   +++  ++f e  +++  ++ iD+i  +a k  kt+ e        l+++++ 
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANETG-----AFFFLINGPEVMSKMAGESESNLRKAFEEAEKNApAIIFIDEIDSIAPKRdKTNGEverrvvsqLLTLMDG 350
                 799*********99999998765.....5568899**********************9997725677*******9875244433112211115555555 PP

                 HHTTT-EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHHHTT----TTH.HHHHHHH- CS
    Bac_DnaA 126 lleegkqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkieaeklevpeev.lefiaerv 198
                 +   ++ vv+++   P++++    r+  rf++   vdi  pd   rl+il+  i+++++++ ++v le++a++ 
  CCD22461.1 351 MKTRSNVVVIAATNRPNSIDPALRRF-GRFDRE--VDIGIPDAVGRLEILR--IHTKNMKLSDDVdLEYLANET 419
                 566677899*******9998766554.688875..56677999******97..666777777777677777765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.011
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSS CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenape 64 
                 +++yg+ G Gkt L ka++ ev +n+ +
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEVSANFIS 557
                 799******************9998765 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 2
                 HHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHH CS
    Bac_DnaA  59 lenapelrvvYltaeeFlnelvkalrdkkaeefk 92 
                 +++ +e  v Y+t e+F++ + +a ++ + +e++
  CCD22461.1 750 EKEVEEDPVPYITKEHFAQAMKTAKKSVSEAELR 783
                 5667788899********9998887776666665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0016      0.56      34      57 ..     255     278 ..     244     337 .. 0.83
   2 !   12.3   0.0   0.00024     0.086      33      62 ..     527     555 ..     517     570 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0016
       AAA_7  34 kpvllvGptGtGKtviikdllkkl 57 
                 + vl++Gp GtGKt++++ + ++ 
  CCD22461.1 255 RGVLMYGPPGTGKTLMARAVANET 278
                 679*************99988765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00024
       AAA_7  33 kkpvllvGptGtGKtviikdllkkldkeky 62 
                 +k vl++Gp GtGKt+++k + ++++  ++
  CCD22461.1 527 SKGVLFYGPPGTGKTLLAKAVATEVS-ANF 555
                 688****************9998887.444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.048        17       9      80 ..     252     413 ..     248     464 .. 0.56
   2 !   13.0   0.0   0.00031      0.11       5      95 ..     521     627 ..     518     638 .. 0.71
   3 ?    0.1   0.4       2.9     1e+03      41     113 ..     718     798 ..     701     814 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.048
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEE..................................EETTCEGGGB-HHHCCHCEEEE-SS-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkp....teGei..................................lldgkdlkeqeleslrkeigvlpqepq 69 
                 k+ + v + G+ G+GK+ +++++a+++                                             ++d+   k+ +++  + e +v++q  +
  CCD22461.1 252 KPPRGVLMYGPPGTGKTLMARAVANETGAffflI---NgpevmskmagesesnlrkafeeaeknapaiifidEIDSIAPKR-DKTNGEVERRVVSQLLT 346
                 5556678899999999999999988875544442...02223555555555555655555555555555333333333333.55555555566777777 PP

                 S-TTSBHHHH........................................................H CS
                 xxxxxxxxxx........................................................x RF
    ABC_tran  70 lfpeltvren........................................................e 80 
                 l ++++ r+n                                                        e
  CCD22461.1 347 LMDGMKTRSNvvviaatnrpnsidpalrrfgrfdrevdigipdavgrleilrihtknmklsddvdlE 413
                 7777777776777766666666666666666555555555555555555555555555555555550 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00031
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.................HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.................xxxxxx RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren.................esdeei 85 
                 ++ l +++ v + G+ G+GK+ L+k++a +++  +  i ++g +l +    +++++i+ ++ +     p++   ++                 +sd+ +
  CCD22461.1 521 KFGLAPSKGVLFYGPPGTGKTLLAKAVATEVS--ANFISVKGPELLSMWYGESESNIRDIFDKaRAAAPTVVFLDEldsiakarggsmgdaggASDRVV 617
                 68899999*********************997..57777888888888888888888888887333334433333356666666666666666666666 PP

                 HHHHHHSTTG CS
                 xxxxxxxxxx RF
    ABC_tran  86 ekalsklglk 95 
                 +++l++++  
  CCD22461.1 618 NQLLTEMDGM 627
                 6666666555 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 2.9
                 EEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  41 eilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........esdeeiekalsklglkelkdtvvksspssLSgGq 113
                 +i+ ++++l ++e e +++e   +  +++  +e++v+e         +  + +++a ++++  el+   ++s++ + S Gq
  CCD22461.1 718 SIEAQKEKLLKKEQEDAEAEANGMVVDKENEDEKEVEEDpvpyitkeHFAQAMKTAKKSVSEAELRRYEAYSQQMKASRGQ 798
                 555665555554555444444444444445555556666777766654444466666666666666666666666666666 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.032        11      36      53 ..     257     274 ..     253     288 .. 0.87
   2 ?    5.3   0.1     0.037        13     130     177 ..     302     349 ..     283     367 .. 0.75
   3 !   12.9   0.3   0.00017     0.062      36     138 ..     530     625 ..     516     636 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.032
      AAA_25  36 allaGapgtGKttlaldl 53 
                 +l +G+pgtGKt +a  +
  CCD22461.1 257 VLMYGPPGTGKTLMARAV 274
                 5789********998655 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.037
      AAA_25 130 vdaleaaieevegvrlvviDplsralggdensnsdv.galvealeriar 177
                 +++  +++e+ + ++ + iD ++++ +   + n +v +++v++l  + +
  CCD22461.1 302 LRKAFEEAEK-NAPAIIFIDEIDSIAPKRDKTNGEVeRRVVSQLLTLMD 349
                 4444556666.55***************777788877****99988766 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 0.00017
      AAA_25  36 allaGapgtGKttlaldlalavatGkpwlg.pvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagveslpLfakdrggtlltadvdal 133
                 +l++G+pgtGKt la  +a +v+   ++   +  pe    +y   E +  ++  ++ra+  ++ + ++l+ +      + +  ++++ g + +++v++l
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEVSA--NFISvK-GPELLSMWYGESESNIRDIFDKARAAAPTVVFLDELDSI-----AKARGGSMGDAGGASDRVVNQL 620
                 789*******************94..333321.258888888888888777777777666655444444322.....3334455666666666666666 PP

      AAA_25 134 eaaie 138
                   +++
  CCD22461.1 621 LTEMD 625
                 66665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0    0.0005      0.18      23     143 ..     255     365 ..     242     378 .. 0.60
   2 !    7.9   0.0    0.0066       2.4      24      46 ..     529     551 ..     517     563 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0005
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCH.HHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS-HHHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeell.eseLFGhekGaFtGAekekkGlfekadgGtlfLDeigelplelQekLlr 115
                        vl+ G  GtGK+l+ara+ +++    + f  +n  ++ +++  ese     + aF  Ae        k    ++f+Dei ++ ++  +    
       CCD22461.1 255 RGVLMYGPPGTGKTLMARAVANET---GAFFFLINGPEVMSKMAgESE--SNLRKAFEEAE--------KNAPAIIFIDEIDSIAPKRDKT-NG 334
                      579****************97654...467777777665444331121..23333444443........3445677777777777665433.33 PP

                      HHHHSEEESBT...SSSEEE--EEEEEEESS CS
  Sigma54_activat 116 vlqegevervG...sskeikvdvriiaatne 143
                       ++++ v+++    +  +++ +v +iaatn+
       CCD22461.1 335 EVERRVVSQLLtlmDGMKTRSNVVVIAATNR 365
                      3344444433211133455566666666665 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0066
                      -EEEECSTTSSHHHHHHHHHHHS CS
  Sigma54_activat  24 svlitGesGtGKellaraiheas 46 
                       vl  G  GtGK+lla+a+ ++ 
       CCD22461.1 529 GVLFYGPPGTGKTLLAKAVATEV 551
                      69***************997654 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0016      0.56     117     140 ..     257     280 ..     251     287 .. 0.87
   2 !   11.1   0.0   0.00043      0.15     117     138 ..     530     551 ..     525     556 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0016
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavpl 140
                 v++yGp+ tGkt +a+a a+ +  
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANETGA 280
                 899***************997765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00043
   Parvo_NS1 117 vwfyGpantGktnlaeaIakav 138
                 v+fyGp+ tGkt la+a a+ v
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEV 551
                 89***************99865 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0018      0.65      22      40 ..     257     275 ..     241     280 .. 0.85
   2 !   11.1   0.1   0.00054      0.19      22      43 ..     530     551 ..     518     558 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0018
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 v + Gp GtGKt++a a+a
  CCD22461.1 257 VLMYGPPGTGKTLMARAVA 275
                 7899***********9998 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00054
                 EEEE--TTSSTTHHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalavea 43 
                 v   Gp GtGKt+la a+a e+
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEV 551
                 6789*************99876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0     0.002      0.73       2      45 ..     257     305 ..     256     328 .. 0.70
   2 !   10.4   0.0    0.0016      0.57       2      23 ..     530     554 ..     529     595 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.002
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvv..pEaareileeklakgeda 45 
                 + + G+++tGKT +++a a++    +  +  pE++ ++  e   + ++a
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANEtgaFFFLIngPEVMSKMAGESESNLRKA 305
                 5789***************766432333367777777766655444444 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0016
      AAA_28   2 ivitGgestGKTtlleaLaar...g 23 
                 + + G+++tGKT l++a a +   +
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEvsaN 554
                 6799**************9654443 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0094       3.4      52      81 ..     253     282 ..     211     373 .. 0.64
   2 !   11.8   0.0   0.00027     0.097      16      81 ..     481     555 ..     465     595 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0094
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeeg 81 
                 p + vL++G  GtGK  + +a+ ne+ +  
  CCD22461.1 253 PPRGVLMYGPPGTGKTLMARAVANETGAFF 282
                 56789******************9986654 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00027
      DUF815  16 lepveevdevklddLvgidkqkealvente.......qfle.g.lpannvLLwGarGtGKSslvkallneyaeeg 81 
                  e+v e  +v+++d+ g+d+ k++l+e +e       q+ + g +p++ vL++G  GtGK  l ka+ +e++++ 
  CCD22461.1 481 RETVVESVNVTWEDIGGLDEIKQELKETVEypvlhpdQYTKfGlAPSKGVLFYGPPGTGKTLLAKAVATEVSANF 555
                 4667777889999999999999999998863333333444422368999********************998875 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0021      0.75       2      78 ..     257     329 ..     256     370 .. 0.61
   2 !    9.2   0.0    0.0029         1       2      30 ..     530     558 ..     529     566 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0021
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappkt 78 
                 vl+ g PG++ktl+++a+a+  ++ f  i   p+++ s + G +  + ++  fe  +      +++ dei+  +pk 
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANETGAFFFLIN-GPEVM-SKMAGESESNLRK-AFEEAEKN-APAIIFIDEIDSIAPKR 329
                 7999****************9998887665.56666.4566665544443.23322222.23456666766666654 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0029
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 vl+ g PG++ktll+ka+a+ ++++f  +
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEVSANFISV 558
                 788999*****************999766 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00039      0.14      22      85 ..     252     315 ..     226     364 .. 0.71
   2 ?    5.6   0.0     0.041        15      18      50 ..     504     553 ..     489     589 .. 0.78
   3 ?   -0.9   1.3       3.9   1.4e+03      66     140 ..     719     806 ..     704     825 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00039
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG..........G CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseayke......i 85 
                 k  + +l+  + GtGKTl+a +++ +         f+fl+++ ++++++  e ++ l +a++e      +
  CCD22461.1 252 KPPRGVLMYGPPGTGKTLMARAVANETG------AFFFLINGPEVMSKMAGESESNLRKAFEEaeknapA 315
                 556677788899******9887777665......59**************88777777776653333342 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.041
                 ......................TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII  18 klks.................krdkrglikmaTGtGKTlvaaklierllk 50 
                 +lk+                    k +l+  + GtGKTl+a +++ +++ 
  CCD22461.1 504 ELKEtveypvlhpdqytkfglAPSKGVLFYGPPGTGKTLLAKAVATEVSA 553
                 555555555555555555555667788999***********888877766 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.9
                 HHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH......................HHHTTT-SEEEEET CS
      ResIII  66 lleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee..............eeeseellrdrfdviiiDE 140
                 +  q ++ +kk +++a +e+++ v +++++  ek+ ++  +  +t + + ++++++               +++ +++r++f  + +DE
  CCD22461.1 719 IEAQKEKLLKKEQEDAEAEANGMVVDKENED-EKEVEEDPVPYITKEHFAQAMKTAkksvseaelrryeaYSQQMKASRGQFSNFAFDE 806
                 4455555555555655555444444444333.355555555555555555555454567777777777767777788888888888888 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0084         3      20      44 ..     255     279 ..     227     289 .. 0.77
   2 !   10.3   0.0    0.0015      0.54      19      51 ..     527     561 ..     498     569 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0084
                 EEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalg 44 
                 + +l++G+ G+GKT ++r++a++ g
  CCD22461.1 255 RGVLMYGPPGTGKTLMARAVANETG 279
                 3499****************99877 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0015
                 TEEEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve..evkSP 51 
                 ++ +l++G+ G+GKT l++++a ++  +  +vk P
  CCD22461.1 527 SKGVLFYGPPGTGKTLLAKAVATEVSANfiSVKGP 561
                 3459*******************998877777766 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0016      0.57       1      56 [.     260     316 ..     260     349 .. 0.71
   2 !    8.3   0.0    0.0081       2.9       1      32 [.     533     565 ..     533     609 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0016
                 EE-TTSSHHHHHHHHHHHHT..EEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekyg..fthlsaGdllreeakrgglakardemrklpleekke 56 
                 +G+PG GK+ +++ ++ + g  f  ++  +++ ++a ++++ + r+++++++++    
  CCD22461.1 260 YGPPGTGKTLMARAVANETGafFFLINGPEVMSKMAGESES-NLRKAFEEAEKNAPAI 316
                 7***************9997545667777888888877764.5666666655555444 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0081
                 EE-TTSSHHHHHHHHHHHHTEEEEEH.HHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa.Gdllre 32 
                 +G+PG GK+ +++ ++ ++   ++s  G  l +
  CCD22461.1 533 YGPPGTGKTLLAKAVATEVSANFISVkGPELLS 565
                 7***************99988877754555554 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0037       1.3       4      45 ..     257     291 ..     254     341 .. 0.68
   2 !    8.5   0.0     0.003       1.1       4      40 ..     530     559 ..     527     596 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0037
     DUF2075   4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvl 45 
                 vl  G +GtGKt+++ ++++e         a +++ N+p+v+
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANET-------GAFFFLINGPEVM 291
                 6789***********9999998.......5555555555554 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.003
     DUF2075   4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvN 40 
                 vl  G +GtGKt+++ ++++e+       +a+++sv 
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEV-------SANFISVK 559
                 56689*************9998.......44455444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.031        11       3      23 ..     257     277 ..     255     280 .. 0.88
   2 ?    0.5   0.0       1.4   5.2e+02      76     132 ..     309     366 ..     290     383 .. 0.62
   3 !    8.1   0.0    0.0063       2.3       3      24 ..     530     551 ..     528     557 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.031
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 v++ G++G GKT +++ +a +
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANE 277
                 8999***********999875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.4
                 HCCSCCCEEEEEE-STT-SS-TCH............HHHHHCTTTTT--EEEEEEECCCH CS
       NACHT  76 llelperlLlilDglDelvtdlgq...kekqpvrtlLselirkkllpeasllltvrpral 132
                   +++  + + +D +D ++ + ++   + +++v   L +l+ +   +++ +++ + +++ 
  CCD22461.1 309 AEKNAP-AIIFIDEIDSIAPKRDKtngEVERRVVSQLLTLMDGMKTRSNVVVI-AATNRP 366
                 444444.4455799999999888888855555555555888885555544444.444443 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0063
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                 v+  G++G GKT L++ +a++ 
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEV 551
                 6789**************9986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0065       2.3      20      40 ..     256     276 ..     244     280 .. 0.81
   2 !    7.8   0.0    0.0068       2.4      21      43 ..     530     552 ..     514     563 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0065
      AAA_30  20 vavltGpAGtGKttalkalre 40 
                  +++ Gp+GtGKt + +a+++
  CCD22461.1 256 GVLMYGPPGTGKTLMARAVAN 276
                 56789**********999865 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0068
      AAA_30  21 avltGpAGtGKttalkalreawe 43 
                 ++  Gp+GtGKt + ka++  + 
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEVS 552
                 6778************9976554 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0072       2.6      22      81 ..     256     309 ..     244     361 .. 0.55
   2 ?    4.6   0.0     0.072        26      23      43 ..     530     550 ..     524     559 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0072
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkkleka 81 
                  ++ YGp g GKt + + ++++        +++i+  e+ ++ + e+  e++ +k +e+a
  CCD22461.1 256 GVLMYGPPGTGKTLMARAVANETG----AFFFLINGPEVMSKMAGES--ESNLRKAFEEA 309
                 5789*********98888888873....4677777777777777666..22222222222 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.072
    ATPase_2  23 yfiYGpegsGKtaLlkeiien 43 
                 ++ YGp g GKt L k ++++
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATE 550
                 677***********9998876 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0027      0.98      20      41 ..     257     278 ..     235     318 .. 0.80
   2 ?    3.6   7.1      0.14        49      19     150 ..     529     750 ..     516     812 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0027
      AAA_11  20 tliqGPPGtgKTktivellsql 41 
                 +l+ GPPGtgKT +  ++ ++ 
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANET 278
                 699*********8888777765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.14
      AAA_11  19 itliqGPPGtgKTktivellsqll........................................srrkseeeksakpriLvCapSNaAvDellerllrg 77 
                  +l+ GPPGtgKT    ++  ++                                              e +  ak+r    +    A D ++ +ll+ 
  CCD22461.1 529 GVLFYGPPGTGKTLLAKAVATEVSanfisvkgpellsmwygesesnirdifdkaraaaptvvflD----ELDSIAKARGGSMGDAGGASDRVVNQLLT- 622
                 47999********5555555555434446666666666665555444444444333333222220....33333444444444444444444444444. PP

      AAA_11  78 lldsegekykpkivRvgnee..eriseav.ksvsleekvekrlekee................................................kaql 125
                   + +g ++k ++  +g+ +  ++i++a+ ++  l++ +                                                        k+++
  CCD22461.1 623 --EMDGMNTKKNVFVIGATNrpDQIDPAIlRPGRLDQLIYVP----LpdeiarlsilraqlrktplepgleleaiakasqgfsgadlsyivqraaKFAI 715
                 ..2222222222222222222211111110111111111111....01111222222223333333334444444444555555555555555556667 PP

      AAA_11 126 akeiskeleklakelrafeeeeek..........e 150
                 +++i++++ekl k+ ++++e e++          e
  CCD22461.1 716 KESIEAQKEKLLKKEQEDAEAEANgmvvdkenedE 750
                 77777777766666666666655544443333330 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2     0.028        10      11      31 ..     255     275 ..     247     316 .. 0.84
   2 !    8.4   0.0    0.0071       2.6       9      38 ..     526     555 ..     520     745 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.028
      AAA_19  11 kvllvtaGpGtGKTrvlkhiv 31 
                 + +l+ ++pGtGKT + +++ 
  CCD22461.1 255 RGVLMYGPPGTGKTLMARAVA 275
                 568899********9877765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0071
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelg 38 
                 ++k +l  ++pGtGKT + k++ +++ ++ 
  CCD22461.1 526 PSKGVLFYGPPGTGKTLLAKAVATEVSANF 555
                 67778999********98887766655543 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0046       1.7      24      83 ..     257     327 ..     244     336 .. 0.67
   2 ?    3.7   0.0      0.17        63      24      46 ..     530     552 ..     525     602 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0046
                      EEEEEETT--HHHHHHCC--TTS-EE....--SSTTHHHH-H.......HHHHHHTTTSEEEEEE-TT--H CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwl....eifvverlaklp.......ldlleqakggtLylkdiadlsk 83 
                      v++ G++G+gk+l+Ar+ +++ g        + v+ + a +         +  e+  ++++++ +i+++ +
       CCD22461.1 257 VLMYGPPGTGKTLMARAVANETGAFFflinGPEVMSKMAGESesnlrkaFEEAEKNAPAIIFIDEIDSIAP 327
                      99******************999854111134444444433333342223333334788888888887765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.17
                      EEEEEETT--HHHHHHCC--TTS CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsg 46 
                      v+  G++G+gk+l A++ + + +
       CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEVS 552
                      8999************9876544 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0063       2.3       5      27 ..     258     280 ..     255     295 .. 0.93
   2 ?    4.3   0.1     0.062        22       5      31 ..     531     557 ..     528     559 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0063
         IPT   5 lifGatttGKtaeaiklaketga 27 
                 l++G+ +tGKt +a ++a+etga
  CCD22461.1 258 LMYGPPGTGKTLMARAVANETGA 280
                 89*******************97 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.062
         IPT   5 lifGatttGKtaeaiklaketgapviv 31 
                 l +G+ +tGKt  a ++a e +a  i+
  CCD22461.1 531 LFYGPPGTGKTLLAKAVATEVSANFIS 557
                 78******************9999887 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.021       7.5      15      40 ..     253     278 ..     245     285 .. 0.89
   2 ?    4.8   0.0     0.042        15      19      51 ..     530     560 ..     524     568 .. 0.85
   3 ?   -2.4   0.1       6.8   2.4e+03     152     174 ..     759     781 ..     742     794 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.021
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdel 40 
                  P  +l+ G pG GK+ +a+++++e+
  CCD22461.1 253 PPRGVLMYGPPGTGKTLMARAVANET 278
                 57889*****************9986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.042
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldp 51 
                 +l  G pG GK+ la+++++e+    n++ +++
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATEV--SANFISVKG 560
                 566699***************9..788887765 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 6.8
  Zeta_toxin 152 Rlvpkeehdeafeglresveale 174
                  ++ ke++ +a++ +++sv + e
  CCD22461.1 759 PYITKEHFAQAMKTAKKSVSEAE 781
                 57888899999988888887755 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.045        16      23      43 ..     257     277 ..     252     282 .. 0.88
   2 ?    6.1   0.0     0.015       5.4      23      43 ..     530     550 ..     525     558 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.045
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 v ++G +G GKt +a+ + n+
  CCD22461.1 257 VLMYGPPGTGKTLMARAVANE 277
                 5689************99987 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.015
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 v ++G +G GKt lak +  +
  CCD22461.1 530 VLFYGPPGTGKTLLAKAVATE 550
                 678*************99877 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       3.9   1.4e+03      38      62 ..     170     194 ..     169     205 .. 0.84
   2 ?    1.9   0.0      0.53   1.9e+02       3      22 ..     258     277 ..     256     281 .. 0.84
   3 ?    0.1   0.1       1.8   6.5e+02      85     107 ..     302     325 ..     291     348 .. 0.66
   4 ?    6.3   0.0     0.023       8.3       6      32 ..     534     560 ..     530     565 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.9
                 E-------EEEEEET.T--EEEEEE CS
    NTPase_1  38 vreggrrigFkivdlasgeegiLar 62 
                 vr g r++ Fk+vd++ +e g  a+
  CCD22461.1 170 VRGGMRQVEFKVVDVEPDEYGVVAQ 194
                 7888999********9888887776 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.53
                 EEE--TTSSHHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlel 22 
                 ++ GppG+GKt + + v+++
  CCD22461.1 258 LMYGPPGTGKTLMARAVANE 277
                 567********999988875 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.8
                 HHHHHHHHH.HHH-EEEE---STT CS
    NTPase_1  85 alealrkal.seadviviDEiGkm 107
                   +a+++a  + + +i iDEi ++
  CCD22461.1 302 LRKAFEEAEkNAPAIIFIDEIDSI 325
                 44455555523444******9665 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.023
                 --TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   6 GppGvGKtTlvkkvlellkssgvkvgG 32 
                 GppG+GKt l k v+ +++ + ++v+G
  CCD22461.1 534 GPPGTGKTLLAKAVATEVSANFISVKG 560
                 9*****************988888888 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0063       2.2     162     196 ..     300     336 ..     284     375 .. 0.71
   2 ?    2.1   0.0      0.26        92     157     189 ..     571     602 ..     538     609 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0063
  KAP_NTPase 162 admektLda..lqkrlVvviDdLDrceteevlqllea 196
                 +++ k++++  ++ + +++iD++D++ +++ ++  e+
  CCD22461.1 300 SNLRKAFEEaeKNAPAIIFIDEIDSIAPKRDKTNGEV 336
                 3344444445569*************99986665555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.26
  KAP_NTPase 157 veelladmektLdalqkrlVvviDdLDrcetee 189
                  e+++ d++++ +a   + Vv++D+LD++ + +
  CCD22461.1 571 SESNIRDIFDKARA-AAPTVVFLDELDSIAKAR 602
                 45566666666666.8899*********87765 PP

>> Zot  Zonular occludens toxin (Zot)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0075       2.7       4      63 ..     258     322 ..     257     388 .. 0.80
   2 ?    2.0   0.0      0.38   1.4e+02       4      17 ..     531     544 ..     529     601 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0075
         Zot   4 lvtGapGsgKtsg..avkkdllp..alkegRkiitnidGlrlerieqvlgekvs.tarliridnp 63 
                 l +G+pG+gKt+   av ++     +l +g +++ ++ G    ++++ ++e+ + ++ +i+id+ 
  CCD22461.1 258 LMYGPPGTGKTLMarAVANETGAffFLINGPEVMSKMAGESESNLRKAFEEAEKnAPAIIFIDEI 322
                 78999999999761156665555666778999999999999999999998888878889998832 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.38
         Zot   4 lvtGapGsgKtsga 17 
                 l++G+pG+gKt+ a
  CCD22461.1 531 LFYGPPGTGKTLLA 544
                 899********865 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0       0.1        36       5      26 ..     261     282 ..     257     287 .. 0.88
   2 ?    6.1   0.0     0.022         8       5      28 ..     534     557 ..     530     559 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.1
                     -STTSSHHHHHHHHHHHHT-EE CS
  Cytidylate_kin   5 GPagsGKssvaralaeklglky 26 
                     GP g+GK  +ara+a++ g+ +
      CCD22461.1 261 GPPGTGKTLMARAVANETGAFF 282
                     9***************998765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.022
                     -STTSSHHHHHHHHHHHHT-EEEE CS
  Cytidylate_kin   5 GPagsGKssvaralaeklglkyld 28 
                     GP g+GK  +a+a+a+++++++++
      CCD22461.1 534 GPPGTGKTLLAKAVATEVSANFIS 557
                     9*******************9986 PP

>> UFD1  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00034      0.12      64     164 ..      91     196 ..      45     203 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00034
        UFD1  64 FtaeegtvylPewmmenlgleegdlveie.svslpkgkfvklqpqsedfldisdp..kavLekaLr.nfatLtkgdvieikyndkvyelkvlevkpes. 157
                    e+g++ l + + +nl+++ gdlv+i+   +++ ++ v + p   ++  ++      +L+  +   +  + kgd++ ++   +++e+kv++v+p++ 
  CCD22461.1  91 DEVEDGSCKLNRIVRNNLNIRLGDLVTIHpCPDIKYASRVSVLPIADTIEGVTGNlfDVFLKPYFVeAYRPVRKGDHFIVRGGMRQVEFKVVDVEPDEy 189
                 45689************************45589***********999998875312566777765599***************************988 PP

        UFD1 158 avsiiet 164
                 +v   +t
  CCD22461.1 190 GVVAQDT 196
                 8877776 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.015       5.3      34      69 ..     256     291 ..     244     298 .. 0.86
   2 ?   -2.9   0.0       7.1   2.5e+03     290     322 ..     331     363 ..     318     365 .. 0.79
   3 ?    2.6   0.0      0.15        52      34      63 ..     529     558 ..     523     566 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.015
       AAA_6  34 ggapaGpagtGKtEtvkdLakalakqvvvfncsdql 69 
                 g  ++Gp gtGKt   + +a++ + +++++n  + +
  CCD22461.1 256 GVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVM 291
                 66789***********************99987766 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.1
       AAA_6 290 ekklqleekfvekviqlyetlkvrhgvmlvGet 322
                 +++ ++e+++v++++ l++ +k+r  v+++ +t
  CCD22461.1 331 KTNGEVERRVVSQLLTLMDGMKTRSNVVVIAAT 363
                 555667888999999999999999999999876 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.15
       AAA_6  34 ggapaGpagtGKtEtvkdLakalakqvvvf 63 
                 g   +Gp gtGKt   k +a +++  ++ +
  CCD22461.1 529 GVLFYGPPGTGKTLLAKAVATEVSANFISV 558
                 55678*********9999999988777655 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       3.9   1.4e+03      49      81 ..      28      57 ..      11      83 .. 0.72
   2 ?    2.4   0.0      0.31   1.1e+02       4      71 ..     260     322 ..     257     326 .. 0.64
   3 ?    4.9   0.0     0.054        19       5      70 ..     534     594 ..     530     599 .. 0.83
   4 ?   -1.9   0.1       6.1   2.2e+03     144     181 ..     739     775 ..     719     787 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.9
  Viral_helicase1 49 tvdsflmalvkstkgkililDEylllhaGyill 81
                     t+ ++l +++k+   ++l++D+++  +  +i l
       CCD22461.1 28 TATAILRQKKKP---NTLLVDDATNDDNSIIAL 57
                     455555555554...99****999988666665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.31
  Viral_helicase1   4 hGvpGcGKStlirkllrts..liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71 
                       G pG GK+ + r ++++     + +n p  e+ ++ + +++++  + ++++++++       i+++DE+
       CCD22461.1 260 YGPPGTGKTLMARAVANETgaFFFLINGP--EVMSKMAGESESNLRKAFEEAEKNAP-----AIIFIDEI 322
                      588**************977533333444..45555544455554555555555543.....58888886 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.054
  Viral_helicase1   5 GvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDE 70 
                      G pG GK+ l + ++ +   ++ +++   ell+++  +++++    +d++  a+       +++lDE
       CCD22461.1 534 GPPGTGKTLLAKAVATEVsANFISVKG-PELLSMWYGESESNIRDIFDKARAAAPT-----VVFLDE 594
                      78*******999999888977766666.8*******99999999999988877653.....799998 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 6.1
  Viral_helicase1 144 teveversgel..kvetepkgqekvlvyltftqalkealg 181
                      ++++v++++e+  +ve +p+   + ++ ++f+qa+k+a +
       CCD22461.1 739 NGMVVDKENEDekEVEEDPV---PYITKEHFAQAMKTAKK 775
                      45666666777323344444...55999999998888654 PP

>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       1.7   6.1e+02       8      84 ..     263     350 ..     257     355 .. 0.66
   2 ?    5.9   2.9     0.058        21       9      85 ..     700     773 ..     699     776 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 1.7
                 SSHHHHHHHHHHHHHHHHHCT..............EEEEETTEEGGGHHHHHHT-SEEEEEESSGGCTHHHHTTSE...EEEECTTHHHCCHCH CS
     PTS_IIB   8 aGmatSlmaaeklekaakelg..............ieaegeagveleaeeiaddaDlvllapqvrvkdlarfagkp...vavinikdalgimdg 84 
                  G + +lma    + +a+e g              +  e+e++ ++  ee +++a +++   +++   +a++ +k    v+++ ++++l+ mdg
  CCD22461.1 263 PGTGKTLMA----RAVANETGaffflingpevmskMAGESESNLRKAFEEAEKNAPAIIFIDEIDS--IAPKRDKTngeVERRVVSQLLTLMDG 350
                 577777777....77777777777777776666444445555558888888888999999999995..44444422233888888888877776 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.058
                 SHHHHHHHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGGCTHHHHTTSEEEEECTTHHHCCHCHH CS
     PTS_IIB   9 GmatSlmaaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrvkdlarfagkpvavinikdalgimdge 85 
                 G+  S+++ ++  k+a ++ iea+ e+  ++e+e+ +++a   ++ ++ +  d+++ ++ pv  i+ +++   m+++
  CCD22461.1 700 GADLSYIV-QRAAKFAIKESIEAQKEKLLKKEQEDAEAEANGMVVDKENE--DEKEVEEDPVPYITKEHFAQAMKTA 773
                 5666999*.66666666667*********9999999999********888..4444444488888888877666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1332  (0.074293); expected 358.6 (0.02)
Passed bias filter:                      711  (0.0396564); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              50  [number of targets reported over threshold]
# CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.49
# Mc/sec: 5196.16
//
Query:       CCD22462.1  [L=164]
Description: hypothetical protein NDAI_0A03050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-19   69.4   0.1    5.9e-19   68.6   0.1    1.4  1  HIT       HIT domain
    8.6e-07   29.4   0.2    1.7e-06   28.5   0.2    1.4  1  DcpS_C    Scavenger mRNA decapping enzyme C-term binding
  ------ inclusion threshold ------
      0.062   13.2   0.0      0.094   12.6   0.0    1.4  1  CwfJ_C_1  Protein similar to CwfJ C-terminus 1


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.1   9.8e-23   5.9e-19       2      97 ..      33     130 ..      32     131 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 9.8e-23
                 GCC-CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCT..TCCCEEEEEEESGGGT-SSSS-EEEEEEC-T CS
         HIT   2 keipstvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkf..knkglrvvinngahagqsvahlHiHviprre 97 
                 + ips +++e+++++ fldi p a+ h+ ++pk h + lh+++++ l ++l ++k++ak+l+ +   +  g++++ nng+ +gq+v h+H+H ip+r+
  CCD22462.1  33 GDIPSYKLIETQYSYSFLDIHPIAEAHIVIVPKYHGKYLHNISDQYLVDILPIAKRFAKTLRLQEdeNGMGYNLLQNNGRISGQVVDHVHFHFIPKRD 130
                 578999*****************************************************987655337779************************985 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.2   2.8e-10   1.7e-06       2     107 ..      25     133 ..      24     137 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2.8e-10
                 -HHHHHHTTSS-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG--TT.TTTHHHHHHHHHHHHHHHTT-T...-EEEEE--SCCCT--S-S-- CS
      DcpS_C   2 wvfnilakgkepervvyedekfvvlkDikpkaklhllvipkrdikslrdLtke.hlpllkemrekakkvieekyne...vdaeelrvgvhyqPsvyhlH 96 
                 + f++l++g +p+  ++e++    + Di p a+ h++++pk + k l++++++  +++l   ++ a k ++ +  e   ++    + g    + v+h+H
  CCD22462.1  25 CTFCKLINGDIPSYKLIETQYSYSFLDIHPIAEAHIVIVPKYHGKYLHNISDQyLVDILPIAKRFA-KTLRLQEDEngmGYNLLQNNGRISGQVVDHVH 122
                 99************************************************7662444444333333.333332222345788889999999******** PP

                 EEEEE...... CS
      DcpS_C  97 lHvisldfesp 107
                 +H+i ++  + 
  CCD22462.1 123 FHFIPKRDRET 133
                 ****9876665 PP

>> CwfJ_C_1  Protein similar to CwfJ C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.6e-05     0.094      13     108 ..      24     127 ..      10     134 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.6e-05
                 H-S--.--SS---SS--S-B-SSEEEE---S-SSTT-EEEEESS--SSTTSS-HHHHHHH....HHHHHHHHHHHHHTT--EEEEEE-....SSS---- CS
    CwfJ_C_1  13 sClfC.lsnpklekhlivsignkvYlalpkgpLssgHvliipieHisallsldeevldei....rkfrkalvkmykkqdkdavvfEis....sersvHl 102
                 +C+fC l n + ++  ++   +  Y  l  +p+++ H++i+p  H + l +++++ l +i    ++f k+l+   ++ ++   ++ ++     +   H+
  CCD22462.1  24 DCTFCkLINGDIPSYKLIE-TQYSYSFLDIHPIAEAHIVIVPKYHGKYLHNISDQYLVDIlpiaKRFAKTLRLQEDENGMGYNLLQNNgrisGQVVDHV 121
                 6888877788888888887.4677999999*******************99999776666222256666666655555555444444344434445566 PP

                 -EEEEE CS
    CwfJ_C_1 103 aiqvip 108
                 + + ip
  CCD22462.1 122 HFHFIP 127
                 666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1270.54
//
Query:       CCD22463.1  [L=507]
Description: hypothetical protein NDAI_0A03060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-45  153.7   0.0    9.2e-45  153.2   0.0    1.2  1  FAD-oxidase_C    FAD linked oxidases, C-terminal domain
    5.3e-31  107.2   0.0    8.3e-31  106.6   0.0    1.3  1  FAD_binding_4    FAD binding domain
  ------ inclusion threshold ------
      0.048   13.7   0.0       0.13   12.4   0.0    1.7  1  DnaGprimase_HBD  DnaG-primase C-terminal, helicase-binding do
      0.093   13.0   0.0        0.2   11.9   0.0    1.5  1  TfoX_N           TfoX N-terminal domain


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   0.0   2.1e-48   9.2e-45       2     217 ..     261     486 ..     260     499 .. 0.96

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 2.1e-48
                    -SEEEEEEEEESSHHHHHHHHHHHHHH.T---SEEEEE-HHHHHHHHHTS-SS...TTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEE CS
  FAD-oxidase_C   2 pearavalvafpsfeaavkavreiaqa.giipaalelmdkkaldlveatkgak...kglpdeeealllvefegddeeeaeeelealveaileatga 93 
                    p+  +va++a+++f++++k++ +++ +  +i++a+e+md+k+  l+++++ +        +e ++++l+e++g+++e+++++le+ +e+  +++ +
     CCD22463.1 261 PKCNNVAFLAVNEFKDVLKVFKRAKMElNEILSAFEFMDNKSQVLTQEYLSKDiafPLEGNEYPFYILIETSGSNKEHDDSKLETFLENVISDELV 356
                    88899**********************************************9976444445679******************************** PP

                    EE..........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHH..............EEEEEEEEEETTEEEEEE CS
  FAD-oxidase_C  94 advlvaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyg..............levvlfgHagdgnlhlyi 175
                     d+++aqde e ++lw++R+++ +       + ++ v+++D+s+P+++l++lv++++ +l++ g              l++v fgH+gdgnlhl++
     CCD22463.1 357 VDGTMAQDESELQNLWNWREMIPE-----STQLNGGVYKYDVSLPLEHLYSLVEATNTRLADAGlmntknmfdstkpvLSAVGFGHIGDGNLHLNV 447
                    ************************.....9****************************************************************** PP

                    EEEEE..--TT--THHHHHHHHHHHHTT-------------- CS
  FAD-oxidase_C 176 lfdladeaeeeraeklvdevvdlavelgGsisgEHGvGldkk 217
                     ++  d++ e+ +e++v+e    +++ +Gsis+EHG G++kk
     CCD22463.1 448 SVRNYDKNIEKVLEPFVYEY---VSSKKGSISAEHGLGFQKK 486
                    ********************...*****************98 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0   1.8e-34   8.3e-31       2     137 ..      86     222 ..      85     223 .. 0.98

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 1.8e-34
                    EEEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTC CS
  FAD_binding_4   2 aavvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgi 96 
                    ++v++p+++ +++++l+++++++l v+++Gg ++l+g+++  ++ ++l+ls+ln+i+++d  +g+++  aG +l+ +  +++++ +l++l+ g+  
     CCD22463.1  86 QLVLKPKTVPQISEILKYCQKEKLAVVPQGGNTGLVGGSIpIFDEIILSLSNLNKIRSFDLVSGILKCDAGLVLESASDFVSEYDYLVPLDLGAKG 181
                    6899***********************************999****************************************************** PP

                    GSBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEEE CS
  FAD_binding_4  97 pgtvGGaiatnagGygsekyGlirdnvlglevvladGevvr 137
                    ++ +GG++atnagG +  kyG+++  vlglevvladG++++
     CCD22463.1 182 SCQMGGVVATNAGGLRLLKYGSLHGSVLGLEVVLADGRILN 222
                    **************************************985 PP

>> DnaGprimase_HBD  DnaG-primase C-terminal, helicase-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.9e-05      0.13      53     107 ..     443     497 ..     419     502 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
                      HHH-TT----T.T-HHHHHHHHHHHHHHHHHHHHHH.SS--HHHHH.HHHHHHHHH CS
  DnaGprimase_HBD  53 illdeklkaldeealkeeLrlllikyyeqklkeikkekelsfeeks.flirkikkk 107
                      + l+  ++++d +++++ L  ++++y ++k  +i++e+ l f++k+ f i+k++k+
       CCD22463.1 443 LHLNVSVRNYD-KNIEKVLEPFVYEYVSSKKGSISAEHGLGFQKKIiFHIQKARKN 497
                      45777888888.99*******************************63689999987 PP

>> TfoX_N  TfoX N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.4e-05       0.2       3      61 ..     411     473 ..     409     480 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.4e-05
                 HGGGS-EEEEEETTEEEEEETTEEEEEEETTEEEEE--HHHHHHHHHTT----EEE....ETT CS
      TfoX_N   3 laplgevtsrrmFGgyglfvdglmfalvsdgelylradeetreefeaaglepftya....kkg 61 
                 la+ g +++++mF  +   +  + f+ + dg+l+l ++  ++++ +++ lepf+y+    kkg
  CCD22463.1 411 LADAGLMNTKNMFDSTKPVLSAVGFGHIGDGNLHLNVSVRNYDKNIEKVLEPFVYEyvssKKG 473
                 8999***************************************************97765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3601.63
//
Query:       CCD22464.1  [L=174]
Description: hypothetical protein NDAI_0A03070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00047   20.1   4.9    0.00086   19.3   4.9    1.5  1  zf-CCHC         Zinc knuckle
  ------ inclusion threshold ------
      0.026   14.2   0.0      0.043   13.4   0.0    1.3  1  DNase-RNase     Bifunctional nuclease
      0.049   13.4   1.8       0.11   12.2   1.8    1.6  1  zf-CCHC_4       Zinc knuckle
        0.2   12.2   6.1        5.9    7.5   2.6    2.7  2  Ribosomal_L35p  Ribosomal protein L35


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   4.9   1.9e-07   0.00086       3      16 ..      61      74 ..      59      76 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.9e-07
                TSSSSSSSSTTTTS CS
     zf-CCHC  3 CynCGepGHiardC 16
                Cy+CG+ GH+  dC
  CCD22464.1 61 CYRCGRKGHYGDDC 74
                ************** PP

>> DNase-RNase  Bifunctional nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.7e-06     0.043      81     115 ..     103     135 ..      94     145 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.7e-06
                  EEEEEEEEET---EEEEE-HHHHHHHHHHHT--EE CS
  DNase-RNase  81 fyAelvlrkeeeeleidaRpSDaiaLAlrtgapIy 115
                  +y +l+ +++  ++ +d+ pSD ++LA +t+++Iy
   CCD22464.1 103 YYRSLKRSRK--DTILDSNPSDDVILAKNTKSQIY 135
                  5556666653..499*******************9 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.8   2.6e-05      0.11      32      48 ..      59      75 ..      56      76 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
   zf-CCHC_4 32 sfCyiCgvlGHsdkrCd 48
                +fCy Cg+ GH  ++C+
  CCD22464.1 59 IFCYRCGRKGHYGDDCE 75
                79*************97 PP

>> Ribosomal_L35p  Ribosomal protein L35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.6    0.0013       5.9      26      43 ..       6      23 ..       2      29 .. 0.82
   2 ?    5.1   0.1    0.0071        32      27      52 ..      94     119 ..      89     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0013
  Ribosomal_L35p 26 agkrHlltkKstkrkrrl 43
                     +k+H+l kKs+k + + 
      CCD22464.1  6 KYKSHCLAKKSRKHRLKS 23
                    79*********9987555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0071
  Ribosomal_L35p  27 gkrHlltkKstkrkrrlrktalvska 52 
                     + rH+l k   +  +r rk+++++++
      CCD22464.1  94 NLRHNLKKQYYRSLKRSRKDTILDSN 119
                     789*****999999********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1294.79
//
Query:       CCD22465.1  [L=277]
Description: hypothetical protein NDAI_0A03080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-90  303.4   4.3    4.4e-90  302.5   4.3    1.4  1  GET2      GET complex subunit GET2


Domain annotation for each model (and alignments):
>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.5   4.3   2.4e-94   4.4e-90       1     309 []       3     274 ..       3     274 .. 0.92

  Alignments for each domain:
  == domain 1  score: 302.5 bits;  conditional E-value: 2.4e-94
        GET2   1 eLSeaEKrrlLRERRqaKmakGgAssRLnkItgqgssvkssttsvLdepaaekttpasttasssssasehddpeiediseiavkpkktasskkksplse 99 
                 e+SeaEKrr+LRERRq+K+a+GgAs+RLnkItgq  ++++st+s+L++p+++ ++p+                 i+ +++++++  ++a ++k+s+ + 
  CCD22465.1   3 EISEAEKRRILRERRQKKLANGGASNRLNKITGQV-DSHLSTESPLETPKDQ-VSPI-----------------ISATETPIPAAYTKAGVNKESHRAG 82 
                 89*********************************.99*********55554.3333.................3333334444556677778888999 PP

        GET2 100 esepeapqldqllkqllqqqqqgnsensqdaesstPdlfsqllkmmkqgeggsakseeetssspeeaeyqqqlleyhkyqvkklkarfllvrlllllln 198
                 ++++++pq++ l+k+l++          q+a++stPdlfs ll ++k+g+++   ++e+   +p+ +++++++l+yh+y v++lka+++l+r+l+ll +
  CCD22465.1  83 DFKDNDPQVE-LFKKLAEL---------QGADKSTPDLFS-LLGSLKDGMSK---TNEPAVGQPQINPVDEKMLQYHDYLVNRLKAYTILIRWLILL-P 166
                 999*******.******99.........68899*******.***********...99999***********************************99.* PP

        GET2 199 fvYhvfrssksalvralteasvrnFftvFltfEvvllsiyylllkkiekenkvktlnnnslilklvslvpegvlPianlrgkvalalkYwevlsmlltD 297
                 f+Y+v+ ss++a+  ++t++s  nFf++F++fE++ +siyy++l++ie++n+v+tlnn+s+i+k+vs+vpegvlPi++l+gk al+l+Y++vlsm++tD
  CCD22465.1 167 FIYMVV-SSSYASEMFFTKPS--NFFMIFTSFEIITMSIYYQALQRIEEKNNVNTLNNSSIIMKIVSMVPEGVLPIKDLKGKAALILQYQQVLSMFVTD 262
                 ****95.666779999*****..**************************************************************************** PP

        GET2 298 lslvvvlfGlls 309
                 +++v++++G++s
  CCD22465.1 263 ICFVIIMVGIFS 274
                 **********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1934.10
//
Query:       CCD22466.1  [L=556]
Description: hypothetical protein NDAI_0A03090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-39  131.4   0.0    2.2e-36  123.5   0.0    3.6  3  BING4CT      BING4CT (NUC141) domain
    2.9e-05   24.7   0.1      0.063   14.2   0.0    4.6  5  WD40         WD domain, G-beta repeat
    6.6e-05   23.1   0.0        4.7    7.6   0.0    4.7  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.059   12.5   0.1       0.12   11.6   0.1    1.4  1  YfkD         YfkD-like protein


Domain annotation for each model (and alignments):
>> BING4CT  BING4CT (NUC141) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.1   4.7e+02       9      31 ..     192     214 ..     186     221 .. 0.79
   2 ?    2.2   0.0     0.036   1.6e+02      13      43 ..     238     268 ..     229     281 .. 0.82
   3 !  123.5   0.0   4.9e-40   2.2e-36       1      79 []     369     447 ..     369     447 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.1
     BING4CT   9 gskieslrFvpfeDvlgvghskg 31 
                 + + ++l+F p++ +l+ + ++g
  CCD22466.1 192 HIEARHLQFLPYHYLLATAGETG 214
                 4567899******9999887776 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.036
     BING4CT  13 eslrFvpfeDvlgvghskgissiivPGsGep 43 
                 + ++  p++ ++ +ghs+g  s+  P   +p
  CCD22466.1 238 TAMTQNPWNAIMHLGHSNGTVSLWSPSMPQP 268
                 55667899*************9998876666 PP

  == domain 3  score: 123.5 bits;  conditional E-value: 4.9e-40
     BING4CT   1 pYlthklpgskieslrFvpfeDvlgvghskgissiivPGsGepnfdaleanpfetkkqrrereVrsLLeKlqpelItld 79 
                 pY++h++pg+ki++++FvpfeD+lgvgh++g++++i+PGsGe+n+dale np+et+kqr+e+eVr+LL+Kl++++Itld
  CCD22466.1 369 PYMSHMFPGNKINNIQFVPFEDLLGVGHETGVTNLIIPGSGEANYDALEINPYETSKQRQEQEVRTLLNKLPADTITLD 447
                 8****************************************************************************98 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.47   2.1e+03      16      34 ..     118     136 ..      96     137 .. 0.83
   2 ?    1.5   0.0      0.14   6.4e+02       3      29 ..     185     211 ..     183     220 .. 0.84
   3 ?    1.3   0.0      0.16   7.1e+02      25      38 .]     250     262 ..     224     262 .. 0.80
   4 !   14.2   0.0   1.4e-05     0.063      11      38 .]     277     304 ..     267     304 .. 0.82
   5 ?   -1.4   0.0       1.2   5.3e+03       6      16 ..     394     403 ..     373     410 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.47
                 EEEETTSSEEEEEETTSEE CS
        WD40  16 lafspdgawlasGsdDgtv 34 
                 + +s++g+ l+ ++++g+v
  CCD22466.1 118 INYSRNGTHLLIAGRKGHV 136
                 5589999998877779997 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.14
                 EEEEEESSSSE..EEEEEETTSSEEEEEE CS
        WD40   3 clrtltGHssv..tslafspdgawlasGs 29 
                  l+ l+ H  +  ++l+f p++ +la+++
  CCD22466.1 185 ELHRLKQH--IeaRHLQFLPYHYLLATAG 211
                 67889999..8779***********9987 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.16
                 EEEEETTSEEEEEE CS
        WD40  25 lasGsdDgtvriWd 38 
                 ++ G+ +gtv +W+
  CCD22466.1 250 HL-GHSNGTVSLWS 262
                 45.9779******5 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 1.4e-05
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++++s+a +++g  +++ + D++ +iWd
  CCD22466.1 277 GPINSIAIDRSGYHMVTTGADKSMKIWD 304
                 56************986666*******9 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.2
                 EEESS.SSEEEE CS
        WD40   6 tltGH.ssvtsl 16 
                 +  GH ++vt l
  CCD22466.1 394 V--GHeTGVTNL 403
                 3..887778877 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.019        85      44      79 ..     118     153 ..     114     162 .. 0.87
   2 !    7.6   0.0     0.001       4.7      36      80 ..     190     234 ..     172     246 .. 0.86
   3 ?   -1.9   0.0      0.98   4.4e+03      48      66 ..     244     262 ..     237     276 .. 0.78
   4 ?    2.4   0.0     0.044     2e+02      39      78 ..     277     316 ..     267     327 .. 0.88
   5 ?    2.4   0.0     0.043   1.9e+02      36      65 ..     375     404 ..     364     415 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.019
  ANAPC4_WD40  44 LaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  ++++ +g+ L +a  +g+v  +d  +g +  +l+ +
   CCD22466.1 118 INYSRNGTHLLIAGRKGHVASMDWRKGVLRAELNLN 153
                  78999******************9999888777765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.001
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  k+  e r+L++ p   lLa a + g ++  d+++g++v++l++k 
   CCD22466.1 190 KQHIEARHLQFLPYHYLLATAGETGWLKYQDVSTGQLVSELRTKL 234
                  6677899********************************998875 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.98
  ANAPC4_WD40  48 pdgklLavaysdgevrlld 66 
                  p + ++  ++s+g+v+l +
   CCD22466.1 244 PWNAIMHLGHSNGTVSLWS 262
                  5567888999999999876 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.044
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                  + ++s+a   +g  ++   +d ++++ d+ + k +hs++ 
   CCD22466.1 277 GPINSIAIDRSGYHMVTTGADKSMKIWDIRNFKELHSIEN 316
                  67899999999999**********************9875 PP

  == domain 5  score: 2.4 bits;  conditional E-value: 0.043
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrll 65 
                   ++++++++++ p + lL v+++ g  +l+
   CCD22466.1 375 FPGNKINNIQFVPFEDLLGVGHETGVTNLI 404
                  57899*******************988876 PP

>> YfkD  YfkD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.6e-05      0.12      88     121 ..      16      49 ..       9      93 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.6e-05
        YfkD  88 qkintnvldnrggkeakklsyvqeeqkkvkGglt 121
                 q+ n+  ++  gg++ kkl+y+q ++kk+k gl+
  CCD22466.1  16 QRENQSKFERPGGNNEKKLNYKQIKDKKLKAGLK 49 
                 67799999************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4046.30
//
Query:       CCD22467.1  [L=939]
Description: hypothetical protein NDAI_0A03100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-52  177.2  11.2    3.4e-52  176.6  11.2    1.3  1  RPN2_C        26S proteasome regulatory subunit RPN2 C-termin
    6.6e-26   89.4  29.1    5.3e-05   23.5   0.0    9.1  9  PC_rep        Proteasome/cyclosome repeat
    4.9e-16   58.9   0.8    2.8e-13   50.1   0.0    4.1  4  HEAT_2        HEAT repeats
    5.6e-06   26.7   1.5       0.34   11.5   0.1    4.3  4  HEAT_EZ       HEAT-like repeat
    2.5e-05   24.1   0.9        3.2    8.3   0.0    4.4  3  HEAT          HEAT repeat
    0.00083   20.0   3.7     0.0017   19.1   3.7    1.4  1  DUF3824       Domain of unknwon function (DUF3824)
     0.0055   16.8   0.1      0.014   15.5   0.1    1.7  1  DUF669        Protein of unknown function (DUF669)
  ------ inclusion threshold ------
       0.02   14.8   4.1      0.032   14.1   4.1    1.2  1  Myc_N         Myc amino-terminal region
      0.044   13.2  13.5      0.063   12.7  13.5    1.1  1  DUF4775       Domain of unknown function (DUF4775)
       0.08   12.9   9.4       0.11   12.4   8.4    1.7  2  Med19         Mediator of RNA pol II transcription subunit 19
       0.12   12.4   1.9          9    6.3   0.0    3.2  3  Cnd1          non-SMC mitotic condensation complex subunit 1
       0.14   12.4   1.1        1.2    9.4   0.0    3.2  4  RICTOR_V      Rapamycin-insensitive companion of mTOR, domain
       0.42   10.6   7.4       0.84    9.6   7.4    1.4  1  RXT2_N        RXT2-like, N-terminal
       0.71    9.3   5.3        1.2    8.6   5.3    1.2  1  PBP_sp32      Proacrosin binding protein sp32
        1.2    8.8   5.3        2.2    7.9   5.3    1.3  1  FAM176        FAM176 family
        2.2    8.6  15.3        3.7    7.8  15.3    1.3  1  Vfa1          AAA-ATPase Vps4-associated protein 1
        2.8    8.4   6.3        4.9    7.6   6.3    1.3  1  RNA_pol_Rpc4  RNA polymerase III RPC4


Domain annotation for each model (and alignments):
>> RPN2_C  26S proteasome regulatory subunit RPN2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.6  11.2   3.2e-55   3.4e-52       1     160 []     752     910 ..     752     910 .. 0.88

  Alignments for each domain:
  == domain 1  score: 176.6 bits;  conditional E-value: 3.2e-55
                 -BEEEEET.TTBEE--EEEEES-TTTTSSS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG.-------------------------------- CS
      RPN2_C   1 TaiIglnk.dLkiPkfefksnakpslFaYPpeleekkekekekvatAvLSttakakarakkkekekeeeekeedkmdvdeekeekekkekekkekekee 98 
                 Ta+Ig++  dL+iPkf++++ ak++ F+YP++++e+++ke+ekvatAvLStta+akarakk++k+k+e+++++ k++ +eek+ ke++++e+ ++   e
  CCD22467.1 752 TAVIGVRGsDLNIPKFDLNCFAKEHAFDYPKMYKESANKEVEKVATAVLSTTARAKARAKKTKKDKDEDKNRKTKKESQEEKSRKEDEDEETVDE---E 847
                 9******99*********************************************************55555555555555444444444444444...4 PP

                 --SS----SSEEEEESSSB--TTCCTTEEE-SSSSEEESSS.-SSSSEEEEEESSTSSSSSEE CS
      RPN2_C  99 ekkkkekektfekleNpaRVlpaQlkyisfkkdsrYkpvkk.kgtgGivllkdkkpeeeeelv 160
                 +  k++++ +++k+ N++RVlp+Q++yisf+k++r++pv+k kg++Gi++l+dk+p+e+ +l+
  CCD22467.1 848 DVYKSKYSAKPYKIVNMSRVLPQQSRYISFNKQERFVPVRKfKGNMGIIVLEDKEPSEPIDLI 910
                 89*********************************************************9998 PP

>> PC_rep  Proteasome/cyclosome repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         7   7.4e+03       7      16 ..     333     342 ..     333     344 .. 0.80
   2 !   15.1   0.0   2.2e-05     0.024       2      33 ..     363     393 ..     362     394 .. 0.89
   3 !   15.5   0.3   1.7e-05     0.018       1      27 [.     399     424 ..     399     430 .. 0.89
   4 !   10.3   0.3   0.00071      0.75       1      32 [.     441     472 ..     441     475 .. 0.82
   5 !   19.5   0.1   9.1e-07   0.00096       1      31 [.     476     506 ..     476     510 .. 0.87
   6 !    7.4   0.0    0.0061       6.4       8      34 ..     553     580 ..     553     581 .. 0.73
   7 ?   -2.3   0.5       7.3   7.7e+03       1       9 [.     582     590 ..     582     592 .. 0.88
   8 !   23.5   0.0     5e-08   5.3e-05       1      35 []     616     650 ..     616     650 .. 0.96
   9 !   13.5   0.1   7.3e-05     0.077       1      22 [.     694     713 ..     694     718 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7
                 HHHCTTSTCH CS
      PC_rep   7 GlihaGsgne 16 
                 G +haG+ ++
  CCD22467.1 333 GFMHAGTTDN 342
                 889***7665 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHCTTSTCHHHHHHHHHHHHHHSSHH CS
      PC_rep   2 AllALGlihaGsgneeaislLkpylsdtsaev 33 
                 A+++LG+ih G+ +e +  ++kpyl+ + +++
  CCD22467.1 363 ATASLGVIHQGNLTE-GKVVMKPYLPGSRTTS 393
                 99*********8888.**********988776 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHCTTSTCHHHHHHHHHHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpyls 27 
                 G+l+ALGli+aG g e + s+L++++ 
  CCD22467.1 399 GSLYALGLIYAGFGKE-ISSYLDNIVG 424
                 89**************.*****98864 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 0.00071
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHHSSH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdtsae 32 
                 G  l+LGl+ +Gs + +a++ L+++ + ++a+
  CCD22467.1 441 GGSLGLGLASMGSSDIDAYERLRDVFYMDNAT 472
                 6679********88889******998855554 PP

  == domain 5  score: 19.5 bits;  conditional E-value: 9.1e-07
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHHSS CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdtsa 31 
                 +A+l++Gl ++Gsg++ +++ L +  +dt++
  CCD22467.1 476 AAALGMGLTMLGSGDNNVMNDLFNFKDDTDH 506
                 79********************988556555 PP

  == domain 6  score: 7.4 bits;  conditional E-value: 0.0061
                 HHCTTSTCH.HHHHHHHHHHHHHSSHHH CS
      PC_rep   8 lihaGsgne.eaislLkpylsdtsaevr 34 
                 l++aG+g++ ++ +lL+  +sd++++vr
  CCD22467.1 553 LAYAGTGSNkAVKKLLHIAVSDSNDDVR 580
                 89*******6666666655667777765 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 7.3
                 HHHHHHHHH CS
      PC_rep   1 GAllALGli 9  
                 GA+++LG +
  CCD22467.1 582 GAVIGLGFV 590
                 9******87 PP

  == domain 8  score: 23.5 bits;  conditional E-value: 5e-08
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHHSSHHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdtsaevra 35 
                 G ++ALG+++aG    +ais+L+p+ +d++++vr+
  CCD22467.1 616 GTAFALGIACAGKALPSAISVLEPLTKDPVDFVRQ 650
                 789*****************************985 PP

  == domain 9  score: 13.5 bits;  conditional E-value: 7.3e-05
                 HHHHHHHHHCTTSTCHHHHHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislL 22 
                 GA+ A+G+++aG g++ ++ +L
  CCD22467.1 694 GACVAQGIMNAG-GRN-VTIQL 713
                 9***********.***.55555 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.44   4.7e+02       2      30 ..       7      34 ..       6      78 .. 0.72
   2 ?    1.5   0.0      0.37     4e+02       4      42 ..     237     275 ..     236     280 .. 0.87
   3 ?   -0.4   0.0       1.5   1.6e+03      21      49 ..     514     545 ..     489     556 .. 0.72
   4 !   50.1   0.0   2.7e-16   2.8e-13       2      87 ..     565     656 ..     564     657 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.44
      HEAT_2  2 daLlqalendpdpevrraairaLgrignp 30
                ++Ll++l + +d  ++  a+r++ +  ++
  CCD22467.1  7 APLLALL-REEDSSLKSYALRSIDEVVDQ 34
                5799999.899999999999999865443 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.37
      HEAT_2   4 LlqalendpdpevrraairaLgrignpealpaLvelled 42 
                 L ++l+++ ++++ ++++  L + +++ +l++L+e l+ 
  CCD22467.1 237 LFERLKDSGSTQTSYQIAFDLVSAASQNLLDTLLEDLTK 275
                 7899999**************************996654 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.5
      HEAT_2  21 iraLg..rignpealpaLve.llededpavRr 49 
                  +aL+  ++g +e+ +  +e l++++dp  R+
  CCD22467.1 514 GIALAlvNYGRQELADDQIEkLVSSDDPLLRY 545
                 44444447788887665555366888888885 PP

  == domain 4  score: 50.1 bits;  conditional E-value: 2.7e-16
      HEAT_2   2 daLlqalendpdpevrraairaLg..rignpealpaLvell.ededpavRraaaeaLgai....gdpealpaLkellddddddvvReaAaeaL 87 
                 ++Ll ++++d++++vrr a++ Lg   +++ +++p +v+ll ++++++vR   a aLg      ++p+a+++L+  l+ d++d+vR+aA +aL
  CCD22467.1 565 KKLLHIAVSDSNDDVRRGAVIGLGfvLLRDYTTVPRIVQLLsKSHNAHVRCGTAFALGIAcagkALPSAISVLEP-LTKDPVDFVRQAAMIAL 656
                 789*********************9999*************889**************66453337*********.55789999*****9998 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1         7   7.3e+03      32      51 ..       8      27 ..       7      28 .. 0.82
   2 ?    4.1   0.0     0.065        69      38      53 ..     573     588 ..     559     590 .. 0.82
   3 ?    6.7   0.0      0.01        11      30      53 ..     598     622 ..     592     623 .. 0.81
   4 !   11.5   0.1   0.00032      0.34      24      54 ..     628     658 ..     626     659 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7
     HEAT_EZ 32 aLlalLnddsdeVRaaAaga 51
                +LlalL+ ++++ + +A++ 
  CCD22467.1  8 PLLALLREEDSSLKSYALRS 27
                68999999999999999885 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.065
     HEAT_EZ  38 nddsdeVRaaAagaLg 53 
                 +d++d+VR  A++ Lg
  CCD22467.1 573 SDSNDDVRRGAVIGLG 588
                 799*****99999998 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.01
     HEAT_EZ  30 lpaLlalLnddsd.eVRaaAagaLg 53 
                 +p  ++lL+ ++  +VR+ +a aLg
  CCD22467.1 598 VPRIVQLLSKSHNaHVRCGTAFALG 622
                 67778888555555**********9 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00032
     HEAT_EZ  24 plvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 +++p ++  L +l +d+ d VR+aA +aL+ 
  CCD22467.1 628 KALPSAISVLEPLTKDPVDFVRQAAMIALSL 658
                 5799*************************96 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.13   1.4e+02       9      25 ..     572     588 ..     565     591 .. 0.86
   2 !    7.6   0.0    0.0049       5.2       2      25 ..     598     622 ..     598     627 .. 0.90
   3 !    8.3   0.0     0.003       3.2       3      27 ..     635     659 ..     633     661 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.13
                 HT-SSHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLg 25 
                  sD++ +VR+ A+  Lg
  CCD22467.1 572 VSDSNDDVRRGAVIGLG 588
                 49**********99998 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0049
                 HHHHHHHH.T-SSHHHHHHHHHHHH CS
        HEAT   2 lPlllkll.sDpspeVReaAakaLg 25 
                 +P +++ll ++ +++VR+ +a aLg
  CCD22467.1 598 VPRIVQLLsKSHNAHVRCGTAFALG 622
                 69999**99***************9 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.003
                 HHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgal 27 
                  +l  l +Dp  +VR+aA  aL  +
  CCD22467.1 635 SVLEPLTKDPVDFVRQAAMIALSLI 659
                 5677778************999865 PP

>> DUF3824  Domain of unknwon function (DUF3824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   3.7   1.6e-06    0.0017       7      85 ..     793     883 ..     787     906 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.6e-06
     DUF3824   7 rdlAeaalaaggaglAaheya.krrerkka.........erererrreedear....dsyeeeyepepyspsPeassqPsasqesyyPetnyF 85 
                  ++A+a l +++ + A  + + k +++ k+         e++r++ + e+  +    d y+++y+ +py+   ++   P++s+   + ++++F
  CCD22467.1 793 EKVATAVLSTTARAKARAKKTkKDKDEDKNrktkkesqeEKSRKEDEDEE--TvdeeDVYKSKYSAKPYKIVNMSRVLPQQSRYISFNKQERF 883
                 57899999888888885554425555544455667644333333333333..134559************99998899999885555555555 PP

>> DUF669  Protein of unknown function (DUF669)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.3e-05     0.014      82     129 ..      77     125 ..      42     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.3e-05
      DUF669  82 alsv.AvgvpegtqldsiedlakallnkplkvkVkleedkngkkYpeVk 129
                 + ++ A+ ++e+ ++d+ ++++++++ +++++++kl ++ + k+Y+++ 
  CCD22467.1  77 SAVKfALAAEEKFDIDEKSQYVETIVSQSIQMYIKLATEYYAKEYQKID 125
                 444449999*************************************996 PP

>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   4.1   3.1e-05     0.032     173     254 ..     768     849 ..     750     874 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-05
       Myc_N 173 asecvdpsvvfpfplnkkekakkaaaesaalaldppasssssasaassssssdskalssseedvlsesdeeeeeeeeeeeei 254
                 + +c      f++p   ke+a+k++++ a+ +l+ +a ++++a+++++++ +d+++++++e++++++++e+e+ee  +ee++
  CCD22467.1 768 DLNCFAKEHAFDYPKMYKESANKEVEKVATAVLSTTARAKARAKKTKKDKDEDKNRKTKKESQEEKSRKEDEDEETVDEEDV 849
                 5678899999****99999997777766666666444434444444444445554444444444444444444444444433 PP

>> DUF4775  Domain of unknown function (DUF4775)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7  13.5     6e-05     0.063     101     205 ..     786     893 ..     767     932 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6e-05
     DUF4775 101 eeeknekekv.....sepvkakaaakkekkeekkqkkkeadekevveekeeeekeeekaetketdakeaeskDqpDgvaklpavaeekqnhvdedksee 194
                 e +++e ekv     s++++aka akk kk++ + +k+ +++ke +eek+++e e+e++   e+d+ +++   +p  + +++ v  ++   ++ +k+e+
  CCD22467.1 786 ESANKEVEKVatavlSTTARAKARAKKTKKDKDE-DKNRKTKKESQEEKSRKEDEDEET-VDEEDVYKSKYSAKPYKIVNMSRVLPQQSRYISFNKQER 882
                 2344455555111115566777777777776444.444477777777776666555544.467788888888999999999999999999999999998 PP

     DUF4775 195 eePevkektee 205
                   P  k k + 
  CCD22467.1 883 FVPVRKFKGNM 893
                 88877766655 PP

>> Med19  Mediator of RNA pol II transcription subunit 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         5   5.2e+03      42      59 ..     414     431 ..     411     435 .. 0.79
   2 ?   12.4   8.4    0.0001      0.11     117     174 ..     784     841 ..     748     846 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5
       Med19  42 klssfLpdlpGvidlkgt 59 
                 ++ss+L++++G +  ++ 
  CCD22467.1 414 EISSYLDNIVGDNAVNTG 431
                 79*********8877665 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.0001
       Med19 117 hkkskvkdakseetlsdseteegfekkhkkkk.kedDkerkkkkkekkkkkkrkspedp 174
                 +k+s  k+  +  t+  s+t  +  + +k kk k++Dk+rk kk+ +++k  rk+ ed+
  CCD22467.1 784 YKESANKEVEKVATAVLSTTARAKARAKKTKKdKDEDKNRKTKKESQEEKS-RKEDEDE 841
                 455555554444455445555555555554444588999988777776666.5555443 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2       3.3   3.5e+03      76     141 ..     179     241 ..     163     277 .. 0.53
   2 ?    6.3   0.0    0.0086         9      26      63 ..     568     605 ..     561     610 .. 0.84
   3 ?    3.9   0.0     0.048        51       2      53 ..     613     664 ..     612     684 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.3
        Cnd1  76 analaalteiseksenaiy.nllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslvekl 141
                 +++ ++lt   ++ +n+i+ +   +++++l+++   + e +   i+  ++   ++ k  a +l+e+l
  CCD22467.1 179 KLVSYVLTTATTNISNTIFrTAILKSLYQLLMS---MGESTDYFIIFKIVVNLNDAKY-AIELFERL 241
                 555555555555533333303334444444433...3333333333222222222223.35555555 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0086
        Cnd1  26 LrkrLkDedpyVRktaaivvakLilndmvkekgflsel 63 
                 L+ +++D++  VR+ a+i++  ++l+d+  +  +++ l
  CCD22467.1 568 LHIAVSDSNDDVRRGAVIGLGFVLLRDYTTVPRIVQLL 605
                 666899*********************99887777666 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.048
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndm 53 
                 +R+    +lg  +  + +   ++ L+   kD+   VR+ a+i+++ ++ +++
  CCD22467.1 613 VRCGTAFALGIACAGKALPSAISVLEPLTKDPVDFVRQAAMIALSLILIQQT 664
                 67777888888888888899999999999*********99999987754444 PP

>> RICTOR_V  Rapamycin-insensitive companion of mTOR, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.5   3.7e+03      27      50 ..     159     184 ..     148     205 .. 0.70
   2 ?   -2.0   0.1       4.2   4.5e+03      44      55 ..     396     407 ..     391     409 .. 0.87
   3 ?    9.4   0.0    0.0012       1.2      18      54 ..     587     623 ..     583     638 .. 0.87
   4 ?   -2.6   0.0       6.2   6.6e+03      34      55 ..     638     659 ..     621     664 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.5
    RICTOR_V  27 divediv..elaeespvlslRGtafy 50 
                 d++e+i+  ++ae+s+v sl+ + ++
  CCD22467.1 159 DLIENILrkRIAEDSDVNSLKLVSYV 184
                 56677763359999999999866543 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.2
    RICTOR_V  44 lRGtafyvLgli 55 
                 ++G  +y+Lgli
  CCD22467.1 396 IKGGSLYALGLI 407
                 789999***998 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0012
    RICTOR_V  18 lGielldeydivedivelaeespvlslRGtafyvLgl 54 
                 lG+ ll +y  v++iv+l  +s++  +R    ++Lg+
  CCD22467.1 587 LGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGI 623
                 68889***********************777778876 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 6.2
    RICTOR_V  34 elaeespvlslRGtafyvLgli 55 
                 e  ++ pv  +R  a+ +L+li
  CCD22467.1 638 EPLTKDPVDFVRQAAMIALSLI 659
                 5567788888999999999998 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.4    0.0008      0.84      54     101 ..     812     868 ..     774     870 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0008
      RXT2_N  54 k............kekekeekeeeeedeegdeededdddeeeaeaaeenpykkvrleelL 101
                 k            ++ke++e+++++ede+++ +de+d     +++   +pyk v+++++L
  CCD22467.1 812 KtkkdkdedknrkTKKESQEEKSRKEDEDEETVDEEDV---YKSKYSAKPYKIVNMSRVL 868
                 23334333322223333333333333444444443333...56788999***99999887 PP

>> PBP_sp32  Proacrosin binding protein sp32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.3    0.0011       1.2     166     231 ..     782     847 ..     757     856 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0011
    PBP_sp32 166 qpwperllnnveellksslslggkekapeakpkeeqllekkqeqleehkteekkkqeeqeeee.kee 231
                 + + e  +++ve++  + ls   + ka  +k k+++  + k  ++++  +eek ++e+ +ee  +ee
  CCD22467.1 782 KMYKESANKEVEKVATAVLSTTARAKARAKKTKKDKDED-KNRKTKKESQEEKSRKEDEDEETvDEE 847
                 3478999999***********999999987777766444.444555555555444444444442333 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.3    0.0021       2.2      54     106 ..     818     876 ..     795     884 .. 0.38

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0021
      FAM176  54 lkkkkkklkeeseka...sededeeeeeeee..dsseseaeeelsefertl.svnvfts 106
                 ++ k++k+k+es+++   +ededee+ +ee+  +s+ s+ + ++ +++r l +++ + s
  CCD22467.1 818 DEDKNRKTKKESQEEksrKEDEDEETVDEEDvyKSKYSAKPYKIVNMSRVLpQQSRYIS 876
                 11111222222222222233333332222221123333333344566666544555555 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  15.3    0.0035       3.7      64     143 ..     784     859 ..     768     883 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0035
        Vfa1  64 kkkeleeeiekvkkeyeekqkkkkekekkkkekdkkdkdkkkekekdkkkekekeeekkkelkkaeeeleekeeprvkky 143
                  k+++++e+ekv + + +++++ k + kk+  k++kd+dk+ +++k++++ek+++e++ +e+ ++e+  +  ++ + k y
  CCD22467.1 784 YKESANKEVEKVATAVLSTTARAKARAKKT--KKDKDEDKNRKTKKESQEEKSRKEDEDEETVDEEDVYK--SKYSAKPY 859
                 445577788888777777666666444332..22233333333333333333322222222222222222..33333334 PP

>> RNA_pol_Rpc4  RNA polymerase III RPC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   6.3    0.0046       4.9      14      79 ..     781     844 ..     763     868 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0046
  RNA_pol_Rpc4  14 Pslkqkavsaaeddkseaesqsaekakaeeeskaekasgaeaeekkskkksskkkkkkkskalklk 79 
                   P++   ++sa++++++ a++  +++a+a++++k++k++++e+++ k+kk+s+++k+ k++++++  
    CCD22467.1 781 PKMY--KESANKEVEKVATAVLSTTARAKARAKKTKKDKDEDKNRKTKKESQEEKSRKEDEDEETV 844
                   4444..556666666666666677777777777777777777777777777666666666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (939 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2152  (0.120029); expected 358.6 (0.02)
Passed bias filter:                      924  (0.0515366); expected 358.6 (0.02)
Passed Vit filter:                       194  (0.0108205); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.04u 0.35s 00:00:01.39 Elapsed: 00:00:00.48
# Mc/sec: 5909.86
//
Query:       CCD22468.1  [L=469]
Description: hypothetical protein NDAI_0A03110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-54  182.1   0.0    9.7e-54  181.4   0.0    1.4  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    1.5e-38  131.5   0.1      2e-38  131.1   0.1    1.2  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    5.3e-06   26.7   1.4    8.5e-06   26.0   0.3    1.9  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
    4.8e-05   23.5   0.0    9.5e-05   22.5   0.0    1.4  1  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
     0.0062   17.0   0.1      0.018   15.6   0.1    1.8  2  XdhC_C         XdhC Rossmann domain
     0.0089   15.8   0.1      0.068   13.0   0.0    2.5  2  ACT            ACT domain
  ------ inclusion threshold ------
      0.012   15.2   0.1      0.025   14.1   0.1    1.6  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.4   0.0   3.8e-57   9.7e-54       2     178 .]     165     349 ..     164     349 .. 0.93

  Alignments for each domain:
  == domain 1  score: 181.4 bits;  conditional E-value: 3.8e-57
                   HHHHHHHTTHHHHHHHHHTTCCHTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE- CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregewksekallgkelsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslh 98 
                   a ++ l+r+l + + e+++g+w ++ + +  e++gkt+GiiG+G+IG+++  +++a+g++vi+yd           +  ++++l+ell+++D+vslh
    CCD22468.1 165 AEIITLARQLGDRSIELHTGTW-NKVSARCWEVRGKTLGIIGYGHIGSQLSVLAEAMGLHVIYYDIVTIMAL---GTAKQVATLDELLNKADFVSLH 257
                   67999*****************.99999***************************************77444...3334788*************** PP

                   S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTC............HHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  99 lpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplped............spllelpnviltPHia 178
                   +p tpetr++++a ++a+mk+ga++iN++RG++vd  aL++a+k++kiagaalDv+ +ep ++             s+l++lpnv+ltPHi+
    CCD22468.1 258 VPETPETRNMLSAPQFAAMKDGAYVINASRGTVVDIPALVQAMKANKIAGAALDVYPNEPGKNGagtynddlnswtSELVSLPNVVLTPHIG 349
                   ***********************************************************8887777777778877789************98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.1   0.1   7.8e-42     2e-38       1     134 []      61     381 ..      61     381 .. 0.99

  Alignments for each domain:
  == domain 1  score: 131.1 bits;  conditional E-value: 7.8e-42
                 EEEEST.CHHHHHHHHHTTEEEEEES.CSSHHHCHHHHTTESEEEE-TTS-BSHHHHHHHTT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh   1 vlileplreeelellkeegvevevkd.ellteellekakdadalivrsntkvtaevlealpkLkviaragvGvDnvDldaakerGilVtnvpgystesv 98 
                 +l+le++++ ++e++k++g++ve+++ ++ ++ell k+kd++a+ +rs+tk+ta+vle++++L +i+++++G+++vDl++a+ +Gi+V+n p ++++sv
  CCD22468.1  61 ILLLENVNQTAIEIFKQQGYQVEFHKtAMGEDELLGKIKDFHAIGIRSKTKLTAKVLEQAKNLICIGCFCIGTNQVDLNYAADKGIAVFNSPFSNSRSV 159
                 7999*************999******999999******************************************************************* PP

                 HHHH............................................................................................... CS
                 xxxx............................................................................................... RF
  2-Hacid_dh  99 AElt............................................................................................... 102
                 AEl+                                                                                               
  CCD22468.1 160 AELViaeiitlarqlgdrsielhtgtwnkvsarcwevrgktlgiigyghigsqlsvlaeamglhviyydivtimalgtakqvatldellnkadfvslhv 258
                 *************************************************************************************************** PP

                 ...........................................................................................T-BHHHHH CS
                 ...........................................................................................xxxxxxxx RF
  2-Hacid_dh 103 ...........................................................................................aaTeeaqe 110
                                                                                                            ++Teeaq 
  CCD22468.1 259 petpetrnmlsapqfaamkdgayvinasrgtvvdipalvqamkankiagaaldvypnepgkngagtynddlnswtselvslpnvvltphigGSTEEAQT 357
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHTTCCGTTBCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 111 niaeeaaenlvaflkgespanavn 134
                 +i+ e+ ++l ++++++++  avn
  CCD22468.1 358 AIGIEVSNALSKYINEGNSVGAVN 381
                 *****************9999997 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.3   3.3e-09   8.5e-06       2     109 ..     201     305 ..     200     312 .. 0.89
   2 ?   -2.9   0.0       2.7   6.8e+03      85     108 ..     437     460 ..     427     463 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 3.3e-09
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.EEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HH CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.akaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspe 95 
                    +g+iG G +Gs++    ++ g +v+ y+       +++a g ak ++++ el++++d+v + v+++++++++++   ++a+k g+++i+ s   + 
     CCD22468.1 201 LGIIGYGHIGSQLSVLAEAMGLHVIYYDIV-----TIMALGtAKQVATLDELLNKADFVSLHVPETPETRNMLSApQFAAMKDGAYVINASRGTVV 291
                    79**************************76.....444444488999****************************999*************99999 PP

                    HHHHHHHHHHHTT- CS
  NAD_binding_2  96 dtrelakelkekgl 109
                    d   l +++k++++
     CCD22468.1 292 DIPALVQAMKANKI 305
                    88888888888765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.7
                    EEEE-S---HHHHHHHHHHHHHTT CS
  NAD_binding_2  85 ilidgstsspedtrelakelkekg 108
                    ++ d s ++ +d +++++el+++ 
     CCD22468.1 437 LMADISQVNQSDIKQIYEELNQTS 460
                    567899999999999999998876 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.7e-08   9.5e-05      22     123 ..     197     298 ..     191     319 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 3.7e-08
                    TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEE...EE.-SSSSSSB-HHHHCCS-TTEEEEE-SSTT CS
  AdoHcyase_NAD  22 aGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadiv...vt.ttGnkdiitlehlkkmkddaivcniGhfd 113
                     Gk+  ++GyG +G   +   +++G +vi  ++  i al +a    +v+tl+e+++kad+v   v  t  +++++++ ++++mkd a v n     
     CCD22468.1 197 RGKTLGIIGYGHIGSQLSVLAEAMGLHVIYYDIVTIMALGTAK---QVATLDELLNKADFVslhVPeTPETRNMLSAPQFAAMKDGAYVINASRG- 288
                    69**********************************9999875...8999***9999998733344255789*****************997653. PP

                    TTBTHHHHHT CS
  AdoHcyase_NAD 114 seidvaalea 123
                    + +d+ al +
     CCD22468.1 289 TVVDIPALVQ 298
                    4456655554 PP

>> XdhC_C  XdhC Rossmann domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.3   8.4e+03      73      87 ..     102     116 ..      65     131 .. 0.52
   2 !   15.6   0.1     7e-06     0.018       2      67 ..     202     302 ..     201     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.3
                 EESS-HHHHHHHCTT CS
      XdhC_C  73 gllGSrkkaarrler 87 
                  ++G r+k++ + + 
  CCD22468.1 102 HAIGIRSKTKLTAKV 116
                 333444444433333 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 7e-06
                 EEE--STTHHHHHHHHHHHTEEEEEEES-GGGG......................-GGG-TT-SE.....................-EEEE--S-HHHH CS
      XdhC_C   2 vifGaghvaqalarlaaalgfrvtvvdpreefa......................tkerfpeade.....................tavvvlthdhklD 57 
                  i+G gh++ +l  la+a+g++v+ +d  + +a                      +                              ++v+ ++++   D
  CCD22468.1 202 GIIGYGHIGSQLSVLAEAMGLHVIYYDIVTIMAlgtakqvatldellnkadfvslH--------VpetpetrnmlsapqfaamkdgAYVINASRGTVVD 292
                 69***************************976778666666666666555554441........15555566677777778888899************ PP

                 HHHHHHHSSS CS
      XdhC_C  58 aealeaalrk 67 
                  +al +a++ 
  CCD22468.1 293 IPALVQAMKA 302
                 *******952 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.5   3.7e+03      42      64 ..     228     250 ..     220     252 .. 0.85
   2 !   13.0   0.0   2.7e-05     0.068       6      64 ..     403     458 ..     398     460 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.5
                 EEEEEEEEEEHHHHHHHHHHHHT CS
         ACT  42 givfvvivvdeedleevlealkk 64 
                 +iv+++ ++ +++++++ e l+k
  CCD22468.1 228 DIVTIMALGTAKQVATLDELLNK 250
                 68899999999999999999988 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.7e-05
                 EEESSTTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHT CS
         ACT   6 gvpDrPGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkk 64 
                   ++ PG+L  v ++l++++i   +  +         ++  +  v+++d++++ e+l++
  CCD22468.1 403 IHQNIPGVLKTVNNILSNHNIEKQFSDSNGNIA---YLMADISQVNQSDIKQIYEELNQ 458
                 6789*****************988888888875...88888888888888888888876 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   9.8e-06     0.025       2      91 ..     196     282 ..     195     328 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9.8e-06
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-HHHH.HHHHHHHTGGG--TT-EE CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliPDelq.kevyeeeiepnlkegkal 91 
                 ++gk++ +iGyG  G   +      gl+v++    +      A  ++ +v+t++e+ +kad+v + +P++ + ++++++     +k+g+++
  CCD22468.1 196 VRGKTLGIIGYGHIGSQLSVLAEAMGLHVIYYDIVT----IMALGTAKQVATLDELLNKADFVSLHVPETPEtRNMLSAPQFAAMKDGAYV 282
                 579*************999999999****9865544....467777789*******************97541456666666677777744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3433.79
//
Query:       CCD22469.1  [L=631]
Description: hypothetical protein NDAI_0A03120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-07   31.0   0.0    1.1e-06   28.8   0.0    1.9  1  APH          Phosphotransferase enzyme family
    0.00034   20.0   0.0       0.57    9.5   0.0    2.4  2  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.01   16.5   0.3      0.045   14.5   0.0    2.1  2  Sulfatase_C  C-terminal region of aryl-sulfatase
        3.1    8.3   6.1        1.7    9.1   2.5    2.4  2  HMG_box      HMG (high mobility group) box


Domain annotation for each model (and alignments):
>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.5e-10   1.1e-06       5     201 ..     157     449 ..     153     451 .. 0.58

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2.5e-10
                 E--.SSCEEEEEEETT.--EEEEEE-TT....S-HHHHHHHHHHHHHHH.HTT-B--B-CTTB.S-EEETTEEEEEEE----EE-SS...HHHHHHHHH CS
         APH   5 lsggasnrtylvttpa.gryvlrrnppa....raaeeirrevallrlLa.kagvpvPevlagd.tddeeigllfalieyvpgrsllr...klsaaqlpe 93 
                 +  g + r y++ t   ++++lr++ p       + +i++eva +++ + k+++ vP+++ +   + + +g +f l+ey++g+ l r   +ls ++ + 
  CCD22469.1 157 IHEGKHHRLYKIDTNLeKSFALRIPYPLddatTMKMRIQSEVATMDFASsKLKINVPKIFSFAaDSINPLGQPFILQEYIDGQLLMRqwdPLSSDENKG 255
                 67899999******9888******666633333556677********9978888******987666777777***************888555555555 PP

                 HHHHHHHHHC..........CHHCH.-STTTB-..............................................................SHHC CS
         APH  94 llealgefla..........alhqvdpaalpla..............................................................dfla 120
                  l+ ++++                        +                                                              d+ +
  CCD22469.1 256 KLQSVIDAVSdiqkklnsitF-----------ShsgsiyfqnvidsdplikshdlegrwcigpsvertlwrkksalkrnqilkhvgpwsaespvtDIIK 343
                 555555555533333333330...........2333334444444444444444444444444444444333333333333333333111111113333 PP

                 HTCCHHHHHHCHHHCCCGCCTCCHHHHHHHH.........................HHHHHHHH--S............SS-EEEE-SS-SGGGEEEC. CS
         APH 121 qdlellrqlesatarllaselldlleeleeq.........................vlaalaallpg............elptvllHgDlhpgNllvdp 182
                 +++el+   ++++ +ll+++ +    +   +                         +                       l+++l H Dl p N+++++
  CCD22469.1 344 DTAELELANVKRRLALLKANIPL--GK---NeakvsenllneqsrsfgnlvtlapfL---------FnsklskipnltaLLKPRLFHPDLDPMNIILKK 428
                 33333333333322222222222..22...122233334444444445555544441.........0444445555677888****************8 PP

                 .TTEE..EEE---TT-EEEEC CS
         APH 183 ddgrv..tGviDfedaglgpp 201
                 +d+ v   +++Dfe +++ p 
  CCD22469.1 429 NDNGVeePYLLDFENCSIKPF 449
                 88888778********99875 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00041       1.9      56     148 ..     192     286 ..     186     291 .. 0.80
   2 !    9.5   0.0   0.00013      0.57     139     171 ..     414     446 ..     406     453 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00041
         Kdo  56 travrEfrllk.rLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnH.adlyakn 148
                  r+  E++ ++ +  +++++vpk+  ++a  +++  + ++l e ++g   + ++    ++ ++ + +  + av  + +kl+++   H + +y +n
  CCD22469.1 192 MRIQSEVATMDfASSKLKINVPKIFSFAADSINPLGQPFILQEYIDGQLLMRQWDPLSSDENKGKLQSVIDAVSDIQKKLNSITFSHsGSIYFQN 286
                 567777777773456789*****************************887777766655566677788999999999999999999934566666 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00013
         Kdo 139 vnHadlyaknillqqeeeeeaeiwliDldkarl 171
                 + H dl + ni l++++++ +e +l+D++ +  
  CCD22469.1 414 LFHPDLDPMNIILKKNDNGVEEPYLLDFENCSI 446
                 56***************************9976 PP

>> Sulfatase_C  C-terminal region of aryl-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     1e-05     0.045      46     101 ..     455     510 ..     439     521 .. 0.78
   2 ?   -2.0   0.0       1.2   5.6e+03      77      96 ..     573     592 ..     562     605 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1e-05
                  TT-EEECCEEEEETTT-TT--S-TTSTT.CCHHHHHHHHHHHHHHHCCC------TC CS
  Sulfatase_C  46 ekvtehdpPllFdlerDpsEkyplsaes.peykevlkeikkaveehkktlkpvpnql 101
                  ++   +d P ++dle+D +E ++ls ++ ++y+ + k++++++ +++++l++ ++ql
   CCD22469.1 455 PQFIRYDGPKIYDLEKDSEEYKKLSDTEkQQYEFIYKRTRNEY-MWENSLNERSPQL 510
                  55667899*****************999788888887777765.6777777766665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
                  HHHHHHHHHHHHHHCCC--- CS
  Sulfatase_C  77 kevlkeikkaveehkktlkp 96 
                  +e++++ ++a++e++++l  
   CCD22469.1 573 EEMIEKHNQALKEFHQKLIT 592
                  45566666666666655544 PP

>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.6   7.2e+03      19      41 ..     313     334 ..     310     337 .. 0.72
   2 ?    9.1   2.5   0.00037       1.7      36      65 ..     472     501 ..     467     504 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.6
                 HHHHSTTS-HHHHHHHHHHHHHH CS
     HMG_box  19 lkaenPelknaeiskklgekWka 41 
                 l  + + lk ++i k++g  W+a
  CCD22469.1 313 LWRKKSALKRNQILKHVGP-WSA 334
                 5567788999999999984.555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00037
                 HHHHHHSHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  36 gekWkalseeeKkkYeekaekekaryekek 65 
                 +e++k+ls+ eK++Ye  +++ + +y+ e+
  CCD22469.1 472 SEEYKKLSDTEKQQYEFIYKRTRNEYMWEN 501
                 689***********************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4530.97
//
Query:       CCD22470.1  [L=501]
Description: hypothetical protein NDAI_0A03130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-52  178.7   0.0    1.7e-52  178.2   0.0    1.3  1  Peptidase_M24   Metallopeptidase family M24
    7.2e-37  125.9   0.0    1.3e-36  125.0   0.0    1.4  1  AMP_N           Aminopeptidase P, N-terminal domain
  ------ inclusion threshold ------
      0.035   13.4   0.0      0.056   12.7   0.0    1.2  1  ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.2   0.0   2.9e-56   1.7e-52       3     209 .]     241     462 ..     239     462 .. 0.90

  Alignments for each domain:
  == domain 1  score: 178.2 bits;  conditional E-value: 2.9e-56
                    HHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTEEEEEEEEE.E CS
  Peptidase_M24   3 irkaariasaaleavleaikpgvterelaaeieattlkrhgarglafppivasgenaavlhytpndrvlkegdlvlidagaeydgyasDitrTv.l 97 
                    +r+a++i+ + +++++   +++ +er l+ ++e++ +  +g+++ a+ p+vasg n+  +hyt n++v+ ++++vl+da + + gy+sDi+rT+ +
     CCD22470.1 241 MRRAGQISGRSYNQAFG--RRFRNERTLHSFLEYK-FVSGGCDKSAYIPVVASGSNSLCIHYTSNNDVMYDDEMVLVDASGALGGYCSDISRTWpV 333
                    9**************54..8899**********77.9*********************************************************99 PP

                    CSSGSHHHHHHHHHHHHHHHHHHHC-ST..TSBHHHHHHHHHHHHHHT....TB........CCGBSSCSEEEESSSSSEEEEEESSSTTCSSB-- CS
  Peptidase_M24  98 vGkftpeqrelyeavleaqeaaikavkp..Gvtlseidaaarevlesa....gl........akffphglGHgvGlevhdegpsvsresndgrkle 179
                    +G+ft+ q++ly avl++q+++i+++k+    +l++i+++  e+++++    g+         k +ph++GH +Gl+vhd+ p+vsr     ++l+
     CCD22470.1 334 NGEFTEPQKDLYSAVLNVQRKCIQLCKAsnNYSLQDIHNKSMEYMKEEllnlGIpnagnwevDKLYPHYIGHNLGLDVHDV-PQVSR----FEPLK 424
                    99*************************743567*************9655454477777888999***************9.***94....58*** PP

                    TTBEEEEEEEEEEET.........TTEEEEEBEEEEEES CS
  Peptidase_M24 180 eGmvftiEpgiyfap.........geggvriedtvlvte 209
                    +G+v+tiEpg+y +p         ++ g+ried++ ++e
     CCD22470.1 425 PGQVITIEPGLY-IPndtqfpdyfRNVGIRIEDDIAIHE 462
                    ************.66344444454335*********997 PP

>> AMP_N  Aminopeptidase P, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.0   2.2e-40   1.3e-36       1     123 []      64     186 ..      64     186 .. 0.95

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 2.2e-40
                 HHHHHHHHHHHS-SSEEEEEE-----EEETTEE------HHHHHHH----SS-EEEEEESSEEEE...EEEE----HHHHHHH----HHHHHHHHHT-S CS
       AMP_N   1 yaerRkrllealpensvvilaagkekyrsgdveypFrqnsdFlYltGfnepdavlvlekeedkkehkstLfvprkdpekelWdGarlgleeakelfgvd 99 
                 y++rR+ l+ +lp ns++il+++++ky+sg v+ypF+q++dF+YltG+nepd++++le ++ k+e+ +++ +p+kd+ +e+W+G r+g +++k++f++d
  CCD22470.1  64 YFQRRHDLMGRLPLNSCLILQSNQVKYASGAVFYPFQQDNDFYYLTGWNEPDSIMILERTR-KDETIFHMITPPKDAFAEQWEGFRTGEKGVKDIFNAD 161
                 89*******************************************************8755.5888********************************* PP

                 EE..EEGGGHHHHHHHHHTT-SE.EE CS
       AMP_N 100 ea..epidelesalakllkgsdktvy 123
                     ++i+e++s+l+k+lk++d+ vy
  CCD22470.1 162 GScsNSIAEWPSYLEKILKRNDT-VY 186
                 6667***************9885.87 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.4e-06     0.056      93     196 ..     159     259 ..     139     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.4e-06
  ALIX_LYPXL_bnd  93 esDkivrqklqenkedl.elL.sgpeeeleaalpssssaaasesveeqirklrsllekldelkaereqllkdlkekaendDitpklltekkrdia 185
                     ++D+  ++ ++e+ + l ++L  ++  + ++++ ++ss  ++++ ++qi ++ ++ +kld+lk + ++++ +++ k+++d  + ++++++ + i+
      CCD22470.1 159 NADGSCSNSIAEWPSYLeKILkRNDTVYFDKQMIKNSS--HNPAHHKQICTVLQINNKLDRLKTDAREIIAEMR-KIKSD-AELRVMRRAGQ-IS 248
                     67888888888888888566755577777888886655..4699*****************************9.55555.77777888877.77 PP

  ALIX_LYPXL_bnd 186 anefealfeee 196
                       ++++ f ++
      CCD22470.1 249 GRSYNQAFGRR 259
                     67777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3433.65
//
Query:       CCD22471.1  [L=648]
Description: hypothetical protein NDAI_0A03140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-15   55.8   0.4      5e-11   42.6   0.0    3.0  3  PPR_2     PPR repeat family
  ------ inclusion threshold ------
      0.067   13.3   0.0       0.32   11.1   0.0    2.2  1  PPR_3     Pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.76   6.8e+03      13      23 ..     133     143 ..     125     147 .. 0.86
   2 !   42.6   0.0   5.5e-15     5e-11       4      49 ..     155     201 ..     152     202 .. 0.93
   3 !   10.1   0.1   7.8e-05       0.7       6      49 ..     233     275 ..     228     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.76
       PPR_2  13 lckkgkveeAf 23 
                 ++++g++e+A+
  CCD22471.1 133 FLQRGQIEKAI 143
                 8999*****97 PP

  == domain 2  score: 42.6 bits;  conditional E-value: 5.5e-15
       PPR_2   4 vtyNtlIsglck.kgkveeAfklfneMkkrglePnsyTysilikglc 49 
                   +Nt++ ++++  ++ + A++l+n+ kk+g++ n+y+ +il+kgl+
  CCD22471.1 155 AGMNTIMEYYLHtLKQAQTAWELYNWRKKWGIPLNEYSNTILFKGLA 201
                 579********87999*****************************97 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 7.8e-05
       PPR_2   6 yNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikglc 49 
                 +N+ + +l +  ++   fkl+ eMk  g++ +s+T+  +++++ 
  CCD22471.1 233 FNAALGALSNCIDITNVFKLY-EMKIDGIRRDSITFLWMLRACS 275
                 899999999999999999999.7*******************86 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.6e-05      0.32       4      38 ..     253     287 ..     252     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.6e-05
       PPR_3   4 remerkgikldvvtYthLLtayanagnkklalevl 38 
                  em+++gi+ d +t+  +L+a+ +++ ++l  e +
  CCD22471.1 253 YEMKIDGIRRDSITFLWMLRACSRVKAENLFVELI 287
                 59************************999877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1065  (0.059401); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4650.98
//
Query:       CCD22472.1  [L=938]
Description: hypothetical protein NDAI_0A03150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-46  156.8   0.1    1.1e-45  156.1   0.1    1.4  1  Y_phosphatase   Protein-tyrosine phosphatase
    1.2e-08   35.5   0.0    7.3e-08   32.9   0.0    2.3  2  Rhodanese       Rhodanese-like domain
     0.0014   18.8   0.8       0.93    9.6   0.0    3.4  3  dUTPase_2       dUTPase
  ------ inclusion threshold ------
      0.019   14.8   0.0        0.1   12.4   0.0    2.3  1  DSPc            Dual specificity phosphatase, catalytic domai
      0.051   13.5   0.1       0.15   12.0   0.0    1.8  2  Y_phosphatase3  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1   0.1     3e-49   1.1e-45       4     234 ..     554     889 ..     552     890 .. 0.81

  Alignments for each domain:
  == domain 1  score: 156.1 bits;  conditional E-value: 3e-49
                    GSSSTTS-B-CTTEEEB............................................TTTTTTTT....EEEEEEE................ CS
  Y_phosphatase   4 knRykdilpydksrVkl............................................kssegpsd....YInAnyi................ 35 
                    knRykdi py++srV+l                                            +++    d    YInAny+                
     CCD22472.1 554 KNRYKDIFPYEHSRVVLkkrsvssisamfsskstnssplpftsatrkknntidatdqdtsdENT----DisenYINANYLklpelalrhellseyg 645
                    9******************************************************997654333....24446**********************9 PP

                    .....EECTEEEEEEEEE---GGGHHHHHHHHHHTT--EEEEESBSEETTEESS---S-SSTSSEEEETTEEEEEE.....EEEEEESSEEEEEEE CS
  Y_phosphatase  36 .....kgykkekkyIatQgPlkstvedFWrmvwqekvkvivmLtsleekgrekcaqYwpeeeeesleygkikvtlk....ekekedekeyvlrele 122
                          ++ ++ +yIatQ+P++st++dF+ ++++++v +i++Lt+++e+g ekc +Yw+       +y++++++l     +++  + +++  +++ 
     CCD22472.1 646 nknseVQFPENVQYIATQAPMQSTIDDFFTCILNNNVPLIISLTNDIESGVEKCFRYWK-----DAKYNDVEIELLeevdVSSAMKPDDVAAKDMY 736
                    987643333599***********************************************.....45566666666633333333344444444444 PP

                    EEETTTTE............EEEEEEEEEESSS-SSSSGSCCHHHH...........HHHHHHHHHH..........STTSS-EEEECSSSSHHHH CS
  Y_phosphatase 123 vkkkkees............eerevkqlqytnWpdhgvpesaksll...........klirkveksk..........eaksgpvvVhCsaGvgRtg 185
                      +++               +++e+ qlq+++Wpd g+  ++ ++l           +li++    +          e+k   ++VhCsaG+gRtg
     CCD22472.1 737 TFDDDGGVilrririiynidQSFETLQLQIKDWPDLGTL-NPLAILkslflkhailnRLIEN----NisskdqddmlENKLLTILVHCSAGCGRTG 827
                    44333333888888888888889**************43.3444443334555333433333....2555589999999999************** PP

                    HHHHHHHHHHHHHH....HSEEEHHH.........HHHHHHTTSTTSS-SHHHHHHHHHHHH CS
  Y_phosphatase 186 tfvaldillqqlea....eeevdvlq.........ivkelrkqRpgmvqtleqyiflyevil 234
                    t +++d ++  le+    ++++d+ +         ++++ rkqR++mvq+++q++ +y+++l
     CCD22472.1 828 TWCTIDSIMTNLEKfdllQNDCDLTNgklfdpiswTINTFRKQRISMVQNINQFLSIYDCLL 889
                    **************766655566666999999999*************************97 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.0     2e-11   7.3e-08       9     105 ..     110     230 ..     102     232 .. 0.75
   2 ?   -1.4   0.0      0.93   3.3e+03      59      83 ..     808     829 ..     782     838 .. 0.69

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2e-11
   Rhodanese   9 lekgkva....llDvRppeeYekghIpgAvnv..skdtlsrakkseapllelpeellel.....gidnkktvvvycdgggr.aaaaaallk........ 87 
                 +e+  ++    +lD Rp+ +Y+k+ I+ A+++  +++ l+r +++ ++l e+++ l++        +n+ ++++y++ +++   +  ++          
  CCD22472.1 110 IESTTIQdellILDLRPFTDYSKSCIRSAIHIclPSTLLRRKNFTLDKLIENLTPLEQNvlsekCAKNNLKIILYDNVANQrDDSISTACNgiiiklsn 208
                 55555555666***********************6677777777777777766666666667787799*************666667766677777777 PP

   Rhodanese  88 ..k...lGyknvsvldGGfkawk 105
                   +      +n+s+l  Gf+++ 
  CCD22472.1 209 yqEannIK-YNISILASGFRQFE 230
                 55144466.79********9996 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.93
   Rhodanese  59 lelgidnkktvvvycdgggraaaaa 83 
                 le   ++  t+ v+c+ g + + ++
  CCD22472.1 808 LE---NKLLTILVHCSAGCGRTGTW 829
                 23...57899*****9998855555 PP

>> dUTPase_2  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.1   3.8e+03      29      52 ..     386     408 ..     372     420 .. 0.72
   2 !    5.5   0.1    0.0049        18      52      75 ..     698     721 ..     692     722 .. 0.88
   3 !    9.6   0.0   0.00026      0.93       2      45 ..     781     820 ..     780     829 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
                 HHHHH....HHHHHHHHHHHTTS. CS
   dUTPase_2  29 lsdwleekllAllvElaElanetr 52 
                 + d + +  lA+++   E++ne+r
  CCD22472.1 386 TLDKY-KDKLAVQIKFEEFLNEFR 408
                 45566.344799999999999986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0049
                 .---SSSSTT---HHHHHHHHHHH CS
   dUTPase_2  52 rsfKyWknkkksdlekvleElvDi 75 
                 ++f+yWk  k +d e  l E vD+
  CCD22472.1 698 KCFRYWKDAKYNDVEIELLEEVDV 721
                 6*********99999999988886 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHHHHHHSTTH.....HH-HHHHH....HHHHHHHH CS
   dUTPase_2   2 lksllelQkeLderiekkwnlkkkrkklsdwleekllAllvEla 45 
                 lksl+ + + L++ ie++   ++k++  +d+le+kll +lv ++
  CCD22472.1 781 LKSLFLKHAILNRLIENNI--SSKDQ--DDMLENKLLTILVHCS 820
                 899**************99..55555..79***********987 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.8e-05       0.1      70      91 ..     809     830 ..     800     839 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.8e-05
                 HHTT-EEEEEESSSSSHHHHHH CS
        DSPc  70 kqkgkkvlVHCqaGisRSatli 91 
                 ++k  ++lVHC aG  R++t +
  CCD22472.1 809 ENKLLTILVHCSAGCGRTGTWC 830
                 566678*************977 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.3   8.2e+03      81     109 ..     406     434 ..     370     442 .. 0.67
   2 ?   12.0   0.0   4.2e-05      0.15     117     139 ..     807     831 ..     796     882 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.3
  Y_phosphatase3  81 aaeeekeeeeaeetlaelYrellesakka 109
                     + +e++++e+ ++ + + Y++l++++k +
      CCD22472.1 406 EFREHTSNEDFDQIVPKWYQNLMQRRKIQ 434
                     35677778888888888899888865544 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.2e-05
  Y_phosphatase3 117 ladee..pvlfHCtaGKDRTGvlaa 139
                     +++++  ++l+HC+aG  RTG  + 
      CCD22472.1 807 MLENKllTILVHCSAGCGRTGTWCT 831
                     55645789*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (938 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 6158.96
//
Query:       CCD22473.1  [L=84]
Description: hypothetical protein NDAI_0A03160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-31  108.6   1.0    1.5e-31  108.5   1.0    1.0  1  Yos1      Yos1-like


Domain annotation for each model (and alignments):
>> Yos1  Yos1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   1.0   8.2e-36   1.5e-31       1      80 []       5      84 .]       5      84 .] 0.93

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 8.2e-36
        Yos1  1 LgslleaalLliNaiaiLsedRfLariglssssaesafgeseeasvkakiinliaavrtlmripLiviNilvivyelvlG 80
                Lg+l++++lLliNa+a+Lse+RfL+rigl++ss+++ +  +e +++k+k+i+li av+tl+ripLi iNilvi+yel+lG
  CCD22473.1  5 LGRLFYVILLLINAVAVLSEERFLRRIGLGRSSNDQPVFGQEGDTTKSKVIQLIGAVQTLLRIPLIGINILVIIYELLLG 84
                799**************************888766555456999***********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 652.90
//
Query:       CCD22474.1  [L=857]
Description: hypothetical protein NDAI_0A03170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-26   89.4   0.0      2e-25   88.2   0.0    1.7  1  Lactamase_B_4  tRNase Z endonuclease
      6e-10   39.0   0.0    0.00055   19.5   0.0    2.3  2  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_4  tRNase Z endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   2.2e-29     2e-25       3      63 .]       7      68 ..       5      68 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 2.2e-29
  Lactamase_B_4  3 vttptsDtsgPlllLqlds.krYlfGkvgEgtQRavneqkvrlsklesiFLtgkvswssigG 63
                   +t+pt+Dt++PlllLq+d+ +rY+fGk++Eg QR+++e+++r+skle+iF+tg+++w  +gG
     CCD22474.1  7 ITHPTADTKHPLLLLQSDHgERYFFGKIPEGAQRVLTENRIRISKLENIFITGELNWPCLGG 68
                   9*********************************************************9998 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   3.2e-07    0.0029       2      55 ..     519     572 ..     518     613 .. 0.81
   2 !   19.5   0.0   6.2e-08   0.00055     135     201 .]     722     790 ..     691     790 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.2e-07
                    EEEES--TTHHHHHTCGGS--SSS--..SEEEEE-SS--HHHHGGGGCCCCC-- CS
  Lactamase_B_2   2 riLiDagpdlrqqalralqPvelrdelppidaVllthaHyDHlaglltlrelrp 55 
                     +L+Dag ++ + ++r  ++ el   +++++++ l+h H+DH  g+ ++ + ++
     CCD22474.1 519 CVLFDAGENTIGTLSRMFSQLELQTIFKDLKLIYLSHLHADHHLGIISILREWY 572
                    59*******999956555777888889******************999877333 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 6.2e-08
                    EEEEEESS-S---HHHHHHHCT.-SEEEEE-S-SSTTHHHH...HHT---STSHHHHCTTSSSSEEEEESB CS
  Lactamase_B_2 135 krvyyigDtgyipeeigerlgg.adllllditayeddemir...hmgHltpeeaveaaadlgakrlvliHi 201
                     +v y+gDt    e+  + +g   dll++++t+ ++   i+   +  H+t++ea+e+ ++++a++l+l+H+
     CCD22474.1 722 FKVSYSGDTRPNIEKFSKGVGYnSDLLIHEATLDNE--LIEdaiKKRHCTINEAIEVSNEMNARKLILTHF 790
                    5699*****97666665555544*******996666..444479**************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (857 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       946  (0.0527637); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 5621.82
//
Query:       CCD22475.1  [L=148]
Description: hypothetical protein NDAI_0A03180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-28   97.9   0.5    3.5e-28   97.9   0.5    1.6  2  DASH_Dad2  DASH complex subunit Dad2
  ------ inclusion threshold ------
      0.022   15.1   0.9       0.17   12.3   0.1    2.1  2  NuiA       Nuclease A inhibitor-like protein


Domain annotation for each model (and alignments):
>> DASH_Dad2  DASH complex subunit Dad2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.5     4e-32   3.5e-28       4      98 ..       7     111 ..       4     112 .. 0.86
   2 ?   -2.1   0.5      0.57   5.1e+03      77      81 ..     129     133 ..     114     146 .. 0.41

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 4e-32
   DASH_Dad2   4 iaeKraELeaLkqlrdlsdslakqleeLeeklstladgteavasVlanWqnvlraismaslkllqkaee.......eaeeeeedeeeeeeee...plpe 92 
                 + +K++ELeaLk++++l+d+++ ql+eL+ ++s+l++++++v +V + W++vl++is+asl+llq++e+       ++++e++d+  +e+++   plpe
  CCD22475.1   7 LISKQRELEALKKITTLTDNMKIQLDELSIQVSKLEHNASVVGDVTSIWDSVLKSISQASLGLLQYSENdyevgvwNNNNESRDDIYNEDKKtgiPLPE 105
                 679******************************************************************88888774444444433333333689**** PP

   DASH_Dad2  93 tLVRIp 98 
                 tLVRI+
  CCD22475.1 106 TLVRIR 111
                 *****7 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.57
   DASH_Dad2  77 eeede 81 
                 e+++e
  CCD22475.1 129 EAKAE 133
                 11111 PP

>> NuiA  Nuclease A inhibitor-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.035   3.1e+02      73      99 ..      10      36 ..       3      53 .. 0.73
   2 ?   12.3   0.1   1.9e-05      0.17       3      45 ..      58      99 ..      56     144 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.035
                -HHHHHHHHHHHHHHHHHTTHSSEEEE CS
        NuiA 73 eeeekeeaqrfqtlvklLksnLtdlkv 99
                ++ e e +++  tl + +k +L++l +
  CCD22475.1 10 KQRELEALKKITTLTDNMKIQLDELSI 36
                677889999999999999999988765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.9e-05
                HHHHHHHHHTTS-EESSSEE--EEEEESS-SS.SSSTTHHHHHH CS
        NuiA  3 lleqLeeltegLLymSeSdypfeviswevdak.eltkekllket 45
                +l+++++++ gLL +Se dy++ v + +++ + ++ +e   k+t
  CCD22475.1 58 VLKSISQASLGLLQYSENDYEVGVWNNNNESRdDIYNE--DKKT 99
                7899****************999877777654344333..3444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1114.26
//
Query:       CCD22476.1  [L=1259]
Description: hypothetical protein NDAI_0A03190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1719  (0.0958782); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 8448.71
//
Query:       CCD22477.1  [L=206]
Description: hypothetical protein NDAI_0A03200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-43  146.3   1.9    1.1e-42  146.0   1.9    1.2  1  MRP-L20   Mitochondrial ribosomal protein subunit L20


Domain annotation for each model (and alignments):
>> MRP-L20  Mitochondrial ribosomal protein subunit L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   1.9   6.3e-47   1.1e-42       4     164 .]      34     203 ..      10     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 6.3e-47
     MRP-L20   4 prskssynrtksrlnlkpeesfgliynPpssapsvsh....tPtkFLPksdprrellaakeskassk......sselPpvlkkkse.kekkyhltkedi 91 
                 p  +ss+++ k  l+ +++  +gl+y+P++s+p++s+    +P++FLPk+dprr l +++   +++         +  +++ ++s+  ek+yhl++++i
  CCD22477.1  34 P--RSSTANYKGFLKAEKKIPQGLYYQPAQSSPTGSInsetIPRSFLPKDDPRRLLYEKSPLGNDPIknkfdsNLDFNVLTGNNSNkLEKSYHLKPDQI 130
                 3..44555555566666666678*************99**9*************9999988888777788876555666666666657899******** PP

     MRP-L20  92 eeirrLraeDPekwsrkkLakkFgcsklfvsmvteapkekkkeveaeleavkerWgekrriaredRkkRkelw 164
                 ++i++Lr+e+P+ +sr+kLak+F++s+lf+s+++++pk++ +e++++l+ +k +W+e+ ++ar+dRkkRkelw
  CCD22477.1 131 KQIQQLRNENPTLYSRSKLAKMFNVSPLFISLCSKPPKSHLDEMDRRLNVIKGKWNERTKLARDDRKKRKELW 203
                 ************************************************************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1639.62
//
Query:       CCD22478.1  [L=329]
Description: hypothetical protein NDAI_0A03210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-25   87.5   0.1    1.3e-24   86.7   0.1    1.4  1  THF_DHG_CYH    Tetrahydrofolate dehydrogenase/cyclohydrolase,
      1e-15   57.4   0.0    4.8e-10   39.0   0.0    2.7  2  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
  ------ inclusion threshold ------
      0.028   14.2   1.6       0.06   13.2   1.6    1.5  1  FTP            Fungalysin/Thermolysin Propeptide Motif
      0.031   14.7   0.0      0.063   13.7   0.0    1.5  1  LIAS_N         N-terminal domain of lipoyl synthase of Radica


Domain annotation for each model (and alignments):
>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.1   2.9e-28   1.3e-24       3     116 .]      13     124 ..      11     124 .. 0.91

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 2.9e-28
                  -HHHHHHHHHHHHHHHHHHHHH.HT---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS-STT CS
  THF_DHG_CYH   3 dGkalakeireelkeeveklke.kgvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPlpkh 99 
                   +++++k++++e+ke++++lk+ k   p L+++l+++dpa+++Y+++++k+ e++Gi+++l+++++    + l + i ++nedd++dGi+++ P+  +
   CCD22478.1  13 LASTISKTYDQEIKEKLNTLKKvKPNGPLLVGFLANNDPAARMYAQWTQKTSESLGIRYQLREMED---PDFLEESIIDANEDDEIDGIMIYFPVFGN 107
                  57899****************94345788***********************************43...4557778*******************999 PP

                  S-HHHHHCCS-GGGBTT CS
  THF_DHG_CYH 100 idekaileaispeKDVD 116
                   ++++++++++ eKDV+
   CCD22478.1 108 AQDQYLQQVVKKEKDVE 124
                  99**************8 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.1e-13   4.8e-10      13      69 ..     149     214 ..     144     224 .. 0.83
   2 !   15.4   0.0     2e-06    0.0089      73     158 ..     243     317 ..     225     319 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.1e-13
                    -SS--HHHHHHHHHHHHCT--.........-TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TT CS
  THF_DHG_CYH_C  13 eallpctpkgvvellketgie.........legkkvvvvGrsnivgkplallLleknatVtvchsk 69 
                    + +lpctp ++v++l+  +i          l gkk+vv++rs+ivg+pla+lL++++a+V  ++ +
     CCD22478.1 149 KSILPCTPLAIVKILEFLKIYnpllpegnrLFGKKCVVINRSEIVGRPLAALLANDGAIVYSVDIN 214
                    6799***********98777545555555599****************************988765 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 2e-06
                    HHHHHCCSSEEEE-SS-TT-.B-GGGS-TT-EEEE---EEC-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHHHC CS
  THF_DHG_CYH_C  73 laeitreadivvvavGkpel.ikaemvkegavviDvGinrvekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaakr 158
                    l++ ++ +di++++v + +     e++k+g++ i+    +          d ++vke+as++ P  g   ++T+amll+n+l+ +++
     CCD22478.1 243 LKKCCQDSDIIITGVPSENYkFPTEYLKDGSTCINFSSFKN--------FD-DSVKEKASLYIPMTG---KVTIAMLLRNMLRLVEN 317
                    688999*********998864899********998654444........45.799*********985...77**********98876 PP

>> FTP  Fungalysin/Thermolysin Propeptide Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.6   1.3e-05      0.06       4      27 ..     115     138 ..     114     139 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
                 EE-TT-EE-TS-EEEEEEEEETTE CS
         FTP   4 kvvkvetdanGttHvryqQtynGi 27 
                 +vvk e+d  G +Hv+yq  y+++
  CCD22478.1 115 QVVKKEKDVEGLNHVYYQNLYHNV 138
                 69*****************99987 PP

>> LIAS_N  N-terminal domain of lipoyl synthase of Radical_SAM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.4e-05     0.063       9      73 ..       8      73 ..       1      86 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.4e-05
      LIAS_N  9 lkkrvlgsaltkaasts.ssltdekkelleeGPdlqDFvsgdkedkseweeykgnlkrekgerlrL 73
                 ++++l+s+++k++ ++  +++++ k++  +GP l  F++++++    ++++++++++  g r +L
  CCD22478.1  8 PGRTILASTISKTYDQEiKEKLNTLKKVKPNGPLLVGFLANNDPAARMYAQWTQKTSESLGIRYQL 73
                5678899999888765416789************************9********99999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2773.40
//
Query:       CCD22479.1  [L=360]
Description: hypothetical protein NDAI_0A03220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-16   59.0   0.9    4.2e-16   59.0   0.9    2.3  2  Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
    1.9e-06   27.7   0.5    5.3e-06   26.3   0.3    1.9  2  SNARE          SNARE domain
  ------ inclusion threshold ------
      0.013   15.6   0.0      0.025   14.6   0.0    1.5  1  SecG           Preprotein translocase SecG subunit
       0.43   10.7   5.0       0.55   10.3   0.0    2.8  3  Spore_III_AB   Stage III sporulation protein AB (spore_III_AB


Domain annotation for each model (and alignments):
>> Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.9   9.5e-20   4.2e-16       1      84 [.       2      85 ..       2      86 .. 0.95
   2 ?   -1.5   0.1      0.69   3.1e+03       6      22 ..      93     111 ..      88     128 .. 0.56

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 9.5e-20
  Syntaxin-18_N  1 mDiTplFkasVktvk.a.sssskseekeakkrkkkrlkkskekdeFikeAkeilkhItkLrkfLleirkaYlnvrshlmtdqerdn 84
                   +D+Tp F+++++++k +  ++ ++   +a++++ k+++  + kd+Fike++++l+ +++L+k+L++i+++Y ++ +  mt+ e+d+
     CCD22479.1  2 TDLTPVFQKYINIIKsEyPERVHKLPADAHSKQLKSKSALQLKDTFIKECYDLLNCLIELKKILSSIESQYKSDVD--MTELEKDD 85
                   6*************963678899999999*********************************************99..******98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.69
  Syntaxin-18_N   6 lFkasVktvk..assssks 22 
                    +F++++++ +  ++ ++++
     CCD22479.1  93 QFQKYIQKFQllEKYENER 111
                    7999999995431222222 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.2   5.2e+03      17      31 ..     236     250 ..     234     252 .. 0.74
   2 !   26.3   0.3   1.2e-09   5.3e-06       3      52 ..     307     356 ..     305     356 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHH CS
       SNARE  17 veraqkeLkkavkyq 31 
                 ve +q+e+k ++ + 
  CCD22479.1 236 VETVQDEVKLYEDTV 250
                 788888888887665 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 1.2e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXX CS
       SNARE   3 vDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvv 52 
                 +++I +n +++++n+++++k+L+ka k +  + kl+ ++ ++++i++l++
  CCD22479.1 307 INNILDNQDDIEVNIRQGNKQLNKAKKAAGRTAKLTTYLAIFFGILILFL 356
                 78899999***************************************996 PP

>> SecG  Preprotein translocase SecG subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.7e-06     0.025      31      70 .]     321     359 ..     312     359 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.7e-06
                 T....SS-SS--SSCCCHHCCHHHHHHHHHHHHHHHHHHC- CS
        SecG  31 f.gggasdslfgsrgaekfLtkiTvilavlFfvlslvlall 70 
                 +    ++++l ++++a++   k+T+ la+ F +l+l+l ++
  CCD22479.1 321 IrQ--GNKQLNKAKKAAGRTAKLTTYLAIFFGILILFLDYI 359
                 543..346788**************************9875 PP

>> Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.15   6.6e+02      66     105 ..      61     106 ..      34     117 .. 0.67
   2 ?    0.3   0.1      0.15   6.8e+02      95     135 ..     245     285 ..     219     297 .. 0.74
   3 ?   10.3   0.0   0.00012      0.55     125     166 ..     313     354 ..     302     356 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.15
                   HHHHHHHHHHH......HH.STSS-HHHHHHHHHHHHGGGS---HH CS
  Spore_III_AB  66 lseffeevaer......leekegesfeeaweeavekllkklaLkke 105
                   l+++++++ ++      + e e+++f + ++ +++k+++k++L ++
    CCD22479.1  61 LKKILSSIESQyksdvdMTELEKDDFDTDFRLQFQKYIQKFQLLEK 106
                   4444444444422222244448888888888888888888887665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.15
                   HHGGG.S---HHHHHHHHHHHHHHT--SHHHHHHHHHHHHHH CS
  Spore_III_AB  95 kllkk.laLkkedkeilkelgeslgysdregqlkalelalee 135
                    +++  ++L+ e+++il++  e l   d+++ql+ +e + + 
    CCD22479.1 245 LYEDTvSKLTGEQLQILQSEHEELL-NDKNDQLAKIEKINKS 285
                   4433347788899999988888887.7888888888876655 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00012
                   HHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXX CS
  Spore_III_AB 125 qlkalelaleeleeeieeareeakkkeklyrtlGvlaGlflv 166
                   ++  +e  +++ ++++ +a++ a + +kl ++l ++ G++++
    CCD22479.1 313 NQDDIEVNIRQGNKQLNKAKKAAGRTAKLTTYLAIFFGILIL 354
                   5667888899999**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1551  (0.0865079); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 3041.39
//
Query:       CCD22480.1  [L=609]
Description: hypothetical protein NDAI_0A03230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-44  149.8   0.6    1.3e-43  148.8   0.0    1.8  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    7.4e-14   51.8   5.1    7.4e-14   51.8   5.1    2.0  2  HBS1_N       HBS1 N-terminus
    1.3e-08   35.1   0.2      1e-07   32.2   0.0    2.6  3  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    1.7e-06   28.1   1.4    2.1e-05   24.6   0.1    2.8  2  MMR_HSR1     50S ribosome-binding GTPase
    0.00062   20.1   0.1     0.0018   18.6   0.1    1.8  1  GTP_EFTU_D2  Elongation factor Tu domain 2
  ------ inclusion threshold ------
      0.019   15.5   0.5        2.6    8.6   0.0    2.6  2  JHD          Jumonji helical domain
      0.031   14.5   3.8       0.66   10.2   0.0    2.7  3  Roc          Ras of Complex, Roc, domain of DAPkinase
      0.045   13.8   2.4        8.5    6.4   0.0    3.3  3  Dynamin_N    Dynamin family
       0.19   11.3   2.1        1.9    8.0   0.2    3.3  3  FeoB_N       Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4       1.3   2.6e+03      34      52 ..     116     134 ..      95     140 .. 0.69
   2 !  148.8   0.0   6.8e-47   1.3e-43       1     182 [.     172     367 ..     172     425 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.3
                 HHHHHHHSTHCHSHHHHHH CS
    GTP_EFTU  34 gekaeeervlDtlkeErer 52 
                 + k+++++ lD+l+eE e 
  CCD22480.1 116 QDKKDSAASLDWLDEEDEE 134
                 2333557779999998875 PP

  == domain 2  score: 148.8 bits;  conditional E-value: 6.8e-47
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH...HHHST............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGH CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgeka...eeerv............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFs 84 
                 k+++ ++++ghvD+GK+TL++rLly+ ga+++++ ++   e +              +D++ eErerg+T+++++  +e  t+k +++++D+PGH+dF+
  CCD22480.1 172 KPHLSFVVLGHVDAGKSTLMGRLLYDIGAVNSNQIRKlkkE-S-EqigkgsfhlawvMDQTTEERERGVTVSICTSDFE--TEKANFTIVDAPGHRDFV 266
                 57999****************************99997532.2.246999*****************************..****************** PP

                 HHHHHHHHT-SEEEEEEETTTB.......STHHHHHHHHHHHHTTTE.EEEEEESCGST...HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEE CS
    GTP_EFTU  85 kevirglrvlDgavlvvdaveG.......vepqteevlrlalkegvp.iivfiNKmDrl...kaelkeiveevkqklsrkeeklekygekgekevpvvf 172
                  + i+g++++D+avl +d+  +          qt+e+  la++++v+ +iv++NKmD +     ++ ei+ ++++ +       e++g++++ +++ v+
  CCD22480.1 267 PNAIAGVSQADVAVLSIDCGTDafesgfnLDGQTKEHTLLAKSMDVNnVIVAMNKMDSVnwsLGRYLEIQGKLSHYF-------EEVGFSED-QIKWVP 357
                 ********************8888888999*****************************777777788888888666.......88899985.****** PP

                 EBTTTTBTHH CS
    GTP_EFTU 173 gSalkgegvk 182
                 +S+++gegv 
  CCD22480.1 358 CSGFSGEGVY 367
                 *******997 PP

>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   5.1   3.7e-17   7.4e-14       1      76 [.       7      84 ..       4      85 .. 0.94
   2 ?   -4.0   0.1         9   1.8e+04       5      10 ..     129     134 ..     120     138 .. 0.53

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 3.7e-17
      HBS1_N  1 ddydseddeeeeeee.....eLsdedqarLrscldevrevLgeeaskvtvtekqikeAlwkyyyDvekaldyllnkfkkkk 76
                ddyd+++   ++++e     +L+de+++  +++l+ v++++++++++   ++  +k Al+++++D + al++l+++fkkkk
  CCD22480.1  7 DDYDDDNGPMDFQDEaefddYLNDEEYDLINDVLPTVKKEMADYQGW---NNLNLKLALFDHEFDTQAALSHLKKTFKKKK 84
                78888888888888899999***************************...9****************************97 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 9
      HBS1_N   5 seddee 10 
                 +e+dee
  CCD22480.1 129 DEEDEE 134
                 222222 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.3   2.6e+03      51      85 ..     133     167 ..     120     170 .. 0.76
   2 ?   -4.0   0.0       8.8   1.8e+04      56      78 ..     458     480 ..     450     482 .. 0.69
   3 !   32.2   0.0   5.2e-11     1e-07       3     109 ..     498     606 ..     496     608 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.3
                  STTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--T CS
  GTP_EFTU_D3  51 kktekvsekkpefvkpGdnvivevelikpialekg 85 
                  +++ + +++++ ++++ ++v+v  +++kp+ + ++
   CCD22480.1 133 EEEARPKKTNEPVIRTYKKVSVPTKPRKPVNVTEY 167
                  344444567888999999***********999876 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 8.8
                  -BSS-SSCCSTT-CEEEEEEECC CS
  GTP_EFTU_D3  56 vsekkpefvkpGdnvivevelik 78 
                  +++++  ++ +Gd v+++++  +
   CCD22480.1 458 KEQNQVPIAIKGDFVTLKLRHAH 480
                  44556678888998888887665 PP

  == domain 3  score: 32.2 bits;  conditional E-value: 5.2e-11
                  EEECCEEEEEEESSS..SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTT.SB-BSS-SSCCSTT-CEEEEEEECCE...EEE--TTTHCCCCEEEE CS
  GTP_EFTU_D3   3 kphtkfeAqvyilekerhtpitagYrpvlyirtadvtgkvveLlskldkkt.ekvsekkpefvkpGdnvivevelikp...ialekgseypqlGrFai 96 
                  ++ +kf+ qv+ ++     p+  g + +l+    +  ++v +L+s++dk+  +k  +kk + + + +++i+evel++    i + +++e ++lGr  +
   CCD22480.1 498 SASQKFTLQVLTFKM--DRPLLPGTSFMLFRGVCEQPARVSKLVSTVDKRDpSKIIKKKIRHLSSNQAAIIEVELTERrrwIPMLTFNENKHLGRVVL 593
                  677899999999999..889999999999999999999*********9986155678999*************99753333***************** PP

                  ECTTCEEEEEEEE CS
  GTP_EFTU_D3  97 ReggrTvaaGvvt 109
                  R+ grT+aaG v 
   CCD22480.1 594 RKDGRTIAAGAVL 606
                  **********996 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       2.3   4.6e+03      23      34 ..      93     104 ..      56     124 .. 0.57
   2 !   24.6   0.1     1e-08   2.1e-05       3      87 ..     178     296 ..     176     321 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.3
                 TEEESSSTTSSS CS
    MMR_HSR1  23 kaivsdkpgtTr 34 
                 +a +++k+ t +
  CCD22480.1  93 VATTTNKKNTAK 104
                 222222222222 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 1e-08
                 EEEESTTSSHHHHHHHHH..................T.............STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinalt..................g.............ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaf 70 
                 +++G+  +GKStL+ +l+                  +             ++   +++ g+T  i +  +++++ ++++vD pG  +    +  + +a+
  CCD22480.1 178 VVLGHVDAGKSTLMGRLLydigavnsnqirklkkesEqigkgsfhlawvmDQTTEERERGVTVSICTSDFETEKANFTIVDAPG--H----RDFVPNAI 270
                 799**************97766666655555554440444555545443234455666677777777777777899********..4....34699*** PP

                 HHHHCTSEEEEEEETT.........T CS
    MMR_HSR1  71 laleeadlillvvdas.........e 87 
                 + + +ad+++l +d+           
  CCD22480.1 271 AGVSQADVAVLSIDCGtdafesgfnL 296
                 **************996555443331 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   9.3e-07    0.0018       3      71 ..     424     488 ..     422     489 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 9.3e-07
                  EEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEE..ETTSEEEEEEEESSCCSGSSTTC CS
  GTP_EFTU_D2   3 valgrvysGtlkkGdevrilgndtskkeivtrissletfhededea..vaganaGvivaikgledaiivGd 71 
                  +++g++ sG +++G+++ +   +++++   + + ++++ +e+ + +  ++g+ + ++++    ed i+ Gd
   CCD22480.1 424 IITGKLGSGSIQPGETITL--YPSEQS---VVVDKILMGKEQNQVPiaIKGDFVTLKLRHAHPED-IQGGD 488
                  799****************..888888...*********88666656688999999988888888.88776 PP

>> JHD  Jumonji helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   1.0     0.048        96      62     102 ..      71     112 ..      62     114 .. 0.79
   2 ?    8.6   0.0    0.0013       2.6      22      75 ..     367     420 ..     362     469 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.048
         JHD  62 alltalke.wtkkeavaekeeeipetikpskLikdlskeirl 102
                 a l+ lk+ ++kk+ ++e ++ +++t + ++  k+++k+i +
  CCD22480.1  71 AALSHLKKtFKKKKVLKEVTKPVATTTNKKNTAKKIEKDISK 112
                 455556551567888899999*****************9976 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0013
         JHD  22 fkfPsfetihWfvakrlleklkelneegkraaeylvkgakalltalkewtkkea 75 
                 +k P+ +  +W+ +++l+++l+++  e ++ + + v+g   l + l+   +k++
  CCD22480.1 367 YKIPYPKEQYWYTGESLVQTLEDVAIEISKESVKEVVGFPFLFSILEVIPSKKN 420
                 6677777889********************999999999999999987776665 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.4       5.6   1.1e+04      26      39 ..      87     100 ..      69     118 .. 0.40
   2 ?    5.1   0.0     0.013        25       3      22 ..     178     197 ..     176     211 .. 0.84
   3 ?   10.2   0.0   0.00033      0.66       9     119 ..     215     323 ..     212     324 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.6
                 -EEETTTTEEEEEE CS
         Roc  26 ekekstigvdfltk 39 
                 ++ ++ ++ ++ +k
  CCD22480.1  87 KEVTKPVATTTNKK 100
                 22222222222222 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.013
                 EEESSTTSSHHHHHHCHCT- CS
         Roc   3 vlvGdsgvGKtsllkrfved 22 
                 v++G   +GK++l+ r++ d
  CCD22480.1 178 VVLGHVDAGKSTLMGRLLYD 197
                 89**************9976 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00033
                 TSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE..GHHH...HCHHHHHHH. CS
         Roc   9 gvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd..srss...enlkeWlke. 101
                 ++GK s+   +v d+ +e+++  + v+++t++++          ++k ++ i D  G+ +f   +   +++a++a+l +d  ++ +    nl+   ke 
  CCD22480.1 215 QIGKGSFHLAWVMDQTTEERERGVTVSICTSDFE----------TEKANFTIVDAPGHRDFVPNAIAGVSQADVAVLSIDcgTDAFesgFNLDGQTKEh 303
                 78********************999999998762..........23578******************************97633332223665444440 PP

                 ..HHHHCSSS-EEEEEE-TT CS
         Roc 102 ..lkkvagkspvilvgnkiD 119
                   l k ++ ++vi+ +nk+D
  CCD22480.1 304 tlLAKSMDVNNVIVAMNKMD 323
                 0045555567899999**99 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.4      0.35   6.9e+02      58      99 ..      79     119 ..      42     169 .. 0.66
   2 ?    4.9   0.0     0.012        24       2      19 ..     178     195 ..     177     198 .. 0.90
   3 ?    6.4   0.0    0.0043       8.5      89     113 ..     227     264 ..     195     319 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.35
                 ET-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETT CS
   Dynamin_N  58 kekkledfsevreeieketekiagankgiskkvillkilsll 99 
                   kk + ++ev++ +   t+k++ + k+i k++ +l+i++ +
  CCD22480.1  79 TFKKKKVLKEVTKPVATTTNKKN-TAKKIEKDISKLNIQDKK 119
                 44555555555555555555555.444444444444444433 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.012
                 EEEEBTTTTHHHHHHHHH CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLl 19 
                 +v+G++ +GKS+++  Ll
  CCD22480.1 178 VVLGHVDAGKSTLMGRLL 195
                 79***********98876 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0043
                 S.............-EEEEEEETTS-SEEEEE---B-S CS
   Dynamin_N  89 k.............villkilsllvkgltlvDlPGlds 113
                                i +++++  + + t+vD PG  +
  CCD22480.1 227 MdqtteerergvtvSICTSDFETEKANFTIVDAPGHRD 264
                 033333333333339999*****************765 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.1   2.2e+03      70     113 ..      24      74 ..      19     110 .. 0.55
   2 ?   -0.4   0.0      0.37   7.3e+02       3      20 ..     177     194 ..     175     201 .. 0.86
   3 ?    8.0   0.2   0.00094       1.9      32      64 ..     237     269 ..     234     338 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
                 HHHHHHCTSSSEEEEEEEGGGHH.......HHHHHHHHHHHTTSSEEEEEE CS
      FeoB_N  70 ardflleeepdvvvnvvdatnle.......rnLyLtlqllelgvpvvlaln 113
                   d+l +ee+d++ +v+ + + e        nL L l l++ + ++  al 
  CCD22480.1  24 FDDYLNDEEYDLINDVLPTVKKEmadyqgwNNLNLKLALFDHEFDTQAALS 74 
                 566777777777766665544331112122344444444444444444444 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.37
                 EEEEESTTSSHHHHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnal 20 
                 ++++G  ++Gk+tl+ +l
  CCD22480.1 177 FVVLGHVDAGKSTLMGRL 194
                 6789**********9876 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.00094
                 TSSSEEEEEEEEETTEEEEEEE----SSSSSSS CS
      FeoB_N  32 GvtvekkegklklkgkeveivDlPGiYslsays 64 
                 Gvtv   +  +++++ +++ivD PG  ++ + +
  CCD22480.1 237 GVTVSICTSDFETEKANFTIVDAPGHRDFVPNA 269
                 9************************87765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1322  (0.0737353); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 4353.50
//
Query:       CCD22481.1  [L=455]
Description: hypothetical protein NDAI_0A03240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.1    9.2  21.3        3.8    7.4  21.3    1.8  1  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  21.3   0.00021       3.8      84     247 ..     183     395 ..       6     424 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00021
       TFIIA  84 astsqslpslvipagksvqsltanssaataatfslpakleppvqipa.gvtlqtasg........qlykvnv...qasgaqqiaaqplqqvvqqsqgsa 170
                 ++ s+  +sl+i+++ +           + ++++  ++++++v +p+ ++t ++a +         +++  +    + g ++i+ +++++    +++++
  CCD22481.1 183 KKYSTDGTSLSINKKTT-DTR-------QVTNTASGTSNNTNVILPSiSITSSPAVPttpramasAALQFRTgftPSMGLDKILLENIASP--RAHSNN 271
                 22222222222222211.111.......111111111111111111111111111111111111111122223333333333333333332..244455 PP

       TFIIA 171 aqssvaalqaqsqqaqalaepqqq.lekq..........qqqqqqqqqqqqqqqvqqqqqe...................................... 220
                  + ++ +lq++++q+++ +   q+ ++++          q     +++qqqqqq+qqqqq+                                      
  CCD22481.1 272 NNGNNVPLQGNHSQFGSPSAMLQMlMSPKsklplpksnlQ-----NHTQQQQQQQQQQQQQnsglydnnwnvntlllsspniimgrrsswvkfespvfi 365
                 5555555555555555555545544444455555433321.....222222221111111113456677779999999999999999999999999999 PP

       TFIIA 221 ....esqqaqqasqeqvagsqvessqtdgae 247
                     ++q+++ +sq+++ + ++++++tdg++
  CCD22481.1 366 pfgnQEQSNPAPSQSKIDN-STSNTSTDGNS 395
                 8866555555555544443.55566666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1697  (0.0946511); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3235.48
//
Query:       CCD22482.1  [L=500]
Description: hypothetical protein NDAI_0A03250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-171  570.4   0.0   2.6e-171  570.2   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  570.2   0.0  1.5e-175  2.6e-171       2     462 .]      35     496 ..      34     496 .. 0.98

  Alignments for each domain:
  == domain 1  score: 570.2 bits;  conditional E-value: 1.5e-175
                 ET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
      Aldedh   2 veses.etievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvl 97 
                 +++++ +ti+v nP+t+e+i++++++taedv+ av+aA+ af   +wa+ +++ Ra +L+k+adl+ee+ke ++ +et ++Gk l  ar++ve ai++l
  CCD22482.1  35 IKGHDyKTIAVENPSTQEKICDISSGTAEDVEYAVEAAEHAFTqtNWATQDPKGRAYYLNKLADLIEEEKELISSIETFDNGKALDLARGDVELAINCL 133
                 56667688*********************************99778***************************************************** PP

                 HHHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCH CS
      Aldedh  98 ryyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsev 196
                 r +a++a+k++g+++ s +g+++++++eP+G++g+I+PWNfP+++++wk+apala+GN+v+lKPa  tpl al++  l++++glPkgv+n+++g+g+ v
  CCD22482.1 134 RDAAAYADKVNGRTIDSGDGYMNFTTKEPIGICGQIIPWNFPFMMLTWKIAPALAMGNVVILKPAGATPLNALYFSSLCQRVGLPKGVVNIIPGPGRIV 232
                 *****************77******************************************************************************** PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHH.HHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHH. CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiaka.aaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaa. 293
                 g ++++hp+++k +ftGstevg++ia + +++nlk++tlElGGk++++v++d +++k++ ++v+g+f naGQ+C+++sr+++qe+iyd++++++++ + 
  CCD22482.1 233 GTTITTHPKIRKAAFTGSTEVGKDIALKaSGSNLKKLTLELGGKSAHLVFDDINIEKTLPNLVNGIFKNAGQICSSGSRIYIQEGIYDKLLAAFKDYIe 331
                 **************************99455*******************************************************************5 PP

                 HT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHS CS
      Aldedh 294 kklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNd 392
                 k+++vgdp+de++  G++++++q++++++y++ +k+egak+l+Gg   +a  +kgyf+ePt++ +v++dmri++eEiFGPV+++ kfk++e+ +++aNd
  CCD22482.1 332 KTITVGDPFDESNFQGAITNKDQFNTIMNYIDIGKKEGAKILTGG---HALGNKGYFIEPTIFYDVKEDMRIVKEEIFGPVVTISKFKTIEDGVRMAND 427
                 566******************************************...7889*********************************************** PP

                 SSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 393 teyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 +e+GL+ag+ t++l++a++va+ l+ G+v+iN++++++    pfgGvkqSg+Gre+g+e+++ yte+k+v
  CCD22482.1 428 SEFGLGAGIETENLSTALKVARMLHSGTVWINTYNDFDSRV-PFGGVKQSGYGREMGQEVYDSYTEIKAV 496
                 *****************************************.**************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3555.17
//
Query:       CCD22483.1  [L=370]
Description: hypothetical protein NDAI_0A03260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-23   80.6   0.0    5.6e-22   77.8   0.0    2.4  3  GST_N_2   Glutathione S-transferase, N-terminal domain
    3.9e-11   42.8   0.0    7.6e-11   41.9   0.0    1.4  1  GST_C_2   Glutathione S-transferase, C-terminal domain
     0.0011   19.2   0.1     0.0036   17.5   0.1    1.8  1  GST_C     Glutathione S-transferase, C-terminal domain
     0.0089   16.4   0.0        5.7    7.4   0.0    2.4  2  GST_N_3   Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   1.3e-25   5.6e-22       1      69 [.      45     180 ..      45     180 .. 0.92
   2 ?   -3.9   0.0         4   1.8e+04      15      26 ..     202     213 ..     202     218 .. 0.77
   3 ?   -1.1   0.0      0.56   2.5e+03      16      47 ..     315     360 ..     312     361 .. 0.57

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 1.3e-25
                 S-HHHHHHHHHHHHCT--EEEEEE.H...-TTSHHHHH............................................................. CS
     GST_N_2   1 aCPwahRvlialalkglediisvv.vlepkgfekseef............................................................. 37 
                 aCPwahR+li++alkgl  +i v+ v+++ +++ ++ +                                                             
  CCD22483.1  45 ACPWAHRTLITRALKGLCGVIGVSvVHWHLDDK-GWRLlpgdpsysssndifytinggmkdteknvskphgdcandssklwidssfdpingferlsqly 142
                 7**********************7689888764.5555888888899999999999999**************************************** PP

                 ....HHHCTTTSSSEEE-CTTE..EEESHHHHHHHHHH CS
     GST_N_2  38 ....prlnprgtVPvLwdkdgq..vineSseIlrylet 69 
                     p++n+r+tVPvLwd ++q  v+neS++I+r+l++
  CCD22483.1 143 ykcnPEYNARFTVPVLWDIETQtiVNNESADIIRMLNS 180
                 ******************755569************96 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4
                 CT--EEEEEEH. CS
     GST_N_2  15 kglediisvvvl 26 
                 k+le +i+++ +
  CCD22483.1 202 KQLEKEIDEFNS 213
                 789999999844 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.56
                 T--EEEEEEH...-TTSHHHHH.................HHHCTTTSSS CS
     GST_N_2  16 glediisvvvlepkgfekseef.................prlnprgtVP 47 
                 g ++i+++v  ++ +++ +  f                  r+np+g  P
  CCD22483.1 315 GYPYIHKWV--RNLYWNYK-AFglttnfdhiklhytrshTRINPLGITP 360
                 567888888..56777654.44444444444444444447777766555 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   1.7e-14   7.6e-11       4      68 ..     235     324 ..     221     325 .. 0.91

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1.7e-14
                 HCHHHHHCCHCHHHCTTT--...................-SS.CTTCS--HHHHHHHHHHHHHHHHHHS-......---TT-HHHHHHHH CS
     GST_C_2   4 veraleqldaaldaleahLa...................dspflfGdqptlaDialapflvrlraagpgf......direaypnlraWle 68 
                 +e  +++++++ld+le+ L                    ++ f+ G q+t aD++l++++vr++ ++ ++      +ir++yp +++W++
  CCD22483.1 235 YEKEVTNVFNHLDKLEKVLQgtyedlqskygkdnekeilKHYFAVGQQLTEADVRLYTTIVRFDPVYVQHfkcnftTIRDGYPYIHKWVR 324
                 55678899*******999999999999999888887776777************************99999*****************97 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1     8e-07    0.0036      22      88 ..     233     325 ..     215     327 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 8e-07
                 HHHHHHHHHHHHHHHHHHHHHH...................TSSSSSTTSSCHHHHHHHHHHH.....HHHHHTTTTT..TTTSHHHHHHHHH CS
       GST_C  22 elvdealekvaevlsaleeelk...................kqdylvGdkltlADialvpiln.....wlqrlglafg..qekfpnlkawler 88 
                 ++++++ + v++ l+ le++l                    k+ + vG++lt AD+ l++ +      ++q+++ +f   ++++p +++w+ +
  CCD22483.1 233 SVYEKEVTNVFNHLDKLEKVLQgtyedlqskygkdnekeilKHYFAVGQQLTEADVRLYTTIVrfdpvYVQHFKCNFTtiRDGYPYIHKWVRN 325
                 5677777778888888888887778888888888888888889999**********7777766699999*********************976 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0013       5.7       1      22 [.      40      61 ..      40      90 .. 0.80
   2 !    6.5   0.0    0.0025        11      40      67 ..     148     178 ..     127     181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0013
                EES-TTSHHHHHHHHHHHHHT- CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekgl 22
                Ly + a+p+a r  ++  +kgl
  CCD22483.1 40 LYVSLACPWAHRTLITRALKGL 61
                9********************9 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0025
                 HH-TT--SSEE..ETTS-.EEESHHHHHHHH CS
     GST_N_3  40 aknplgkvPvL..eddge.altdSlaIidyL 67 
                 ++n + +vPvL    +++ +  +S++Ii+ L
  CCD22483.1 148 EYNARFTVPVLwdIETQTiVNNESADIIRML 178
                 567889*****65233443667******988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2844.28
//
Query:       CCD22484.1  [L=380]
Description: hypothetical protein NDAI_0A03270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-23   82.3   0.0    4.9e-23   81.8   0.0    1.2  1  Formyl_trans_N  Formyl transferase


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   2.7e-27   4.9e-23       2     152 ..      26     186 ..      25     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 2.7e-27
                     EEEEEESESSHHHHHH.HHHHHHTTSE.CEEEEEEESCTTEHCHHHHHHCCHCCCECHHCC..........SCCCCCCCHHHHHHHHCTT-SEEE CS
  Formyl_trans_N   2 kivvlisgtgsnlqal.ldalkkgsle.advvlvvsnkdkaaglekaeaasiptkvfeekk..........leprsqfeeelaeelkelkadliv 84 
                     ++++++++++sn+    l +lk+++ +  + ++vv+++  ++g++ ++ + +p+  + ++           +   s+  + +++ +++++ ++i+
      CCD22484.1  26 NVLFFGTDEFSNFTLKtLFSLKNKEPKlINSIQVVTKPSIWCGRRHSKLFIPPVTGLYNSLndstlppiipY--DSNDVQPIKDLINKESINMII 118
                     89***********9876788888877789************************99988888899*9998444..45577889************* PP

                     EES--S---HHHHHSSTTSEEEEESSSTTTTBSS-HHHHHHHTTSSEEEEEEEE--.SSSSTS-EEEEE CS
  Formyl_trans_N  85 lagymkllpkelvqavrlkilniHpSLLPrfkGaaaiqraleaGdketGvtihfvd.eelDtGailaqk 152
                     + +++ l+p el+++v+   +n+HpSLLP++kG+++ q +l++ + +tG+ti+ +d  ++D G+i+ q+
      CCD22484.1 119 ATSFGYLIPAELIKMVPY-SMNVHPSLLPQYKGSSPLQYTLLNRNLVTGITIQELDpFKFDAGKIIEQT 186
                     ******************.9************************************99********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3024.74
//
Query:       CCD22485.1  [L=736]
Description: hypothetical protein NDAI_0A03280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-10   38.6   0.0    3.1e-09   36.6   0.0    2.0  1  Acyltransferase  Acyltransferase
  ------ inclusion threshold ------
       0.68   10.2   6.4       0.37   11.0   1.9    2.5  2  YesK             YesK-like protein


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   3.5e-13   3.1e-09       2     134 ..      69     297 ..      68     298 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 3.5e-13
  Acyltransferase   2 vrvtglenlpekgpailvaN.Hqsy.lDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidR..................... 72 
                      ++ ++ +++p++gp+i+va  H    +D+++l+  ++k   +r++ ++ +++ l  p +gf++r + +i + R                     
       CCD22485.1  69 IKSRNAYKIPSDGPIIFVAApHANQfVDPVILMEQVKKVV-NRRISFLIAEKSLHQPAIGFFARCVMAIGVVRaqdnlklvpngakifikdpke 161
                      6778999*********9975499989********996666.778877777777888************************************** PP

  Acyltransferase  73 .....................................................................ksnaraagsleniselleegklvvi 97 
                                                                                           +++ ++ ++++++ e l +++ ++i
       CCD22485.1 162 nprkitgvnthfltafhakgliglpknmgtaeilsiesdteltlrkefknfankpdlqnlllkgtsfkyTDKVNQSSVYHKVFEHLANNDCIGI 255
                      ******************************************************************998777777888888889********** PP

  Acyltransferase  98 FPEGtrsregellpfkkGlvrlaakak.....kgvpivPvai 134
                      FPEG+    + llp k+G++ +a+ ++      +v ivP+++
       CCD22485.1 256 FPEGGSHDRTDLLPLKAGVAIMALGCMdkhpdVNVKIVPCGM 297
                      ***************************888877888888876 PP

>> YesK  YesK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3     0.083   7.5e+02       7      37 ..     457     487 ..     448     505 .. 0.75
   2 ?   11.0   1.9   4.1e-05      0.37      14      52 ..     517     553 ..     499     557 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.083
        YesK   7 itaillfavsyllkkrfpkkkygiilllili 37 
                    i++f   ++l +r +k+k+ ++l+++++
  CCD22485.1 457 LPGIIMFSPVFILANRISKRKAREALAASSV 487
                 3457888888999999999999999998776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 4.1e-05
        YesK  14 avsyllkkrfpkkkygiilllilillslivvlysllvvG 52 
                  +sy ++kr     y++i+l +++ ++ + v ys l+vG
  CCD22485.1 517 LISYYFSKR--GSTYDKIFLFVSTYICCVIVTYSALIVG 553
                 478888888..5578899999999999888********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1160  (0.0646996); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.40
# Mc/sec: 5498.17
//
Query:       CCD22486.1  [L=337]
Description: hypothetical protein NDAI_0A03290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-09   37.0   9.3      1e-08   35.6   9.3    1.6  1  DUF5102   Domain of unknown function (DUF5102)
  ------ inclusion threshold ------
       0.15   12.3   6.7         10    6.3   0.9    3.3  3  DUF719    Protein of unknown function (DUF719)
        4.3    7.8  10.7        4.3    7.8   2.8    3.0  2  ZapB      Cell division protein ZapB


Domain annotation for each model (and alignments):
>> DUF5102  Domain of unknown function (DUF5102)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   9.3   1.7e-12     1e-08      12     287 ..      47     314 ..      42     316 .. 0.66

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 1.7e-12
     DUF5102  12 aea.eddddFgDFddg.fqeeeaeeseeaeeeepaepsasslsfplldfesldlesdllaaleeeldelfppseeke....irslevplskesqiflte 104
                 ae+ +ddddFg+F d  f+e+++  +         +++++  ++++ + +s++++ d +a  ++ ld+lfp++++k      ++l+++  k s+++ +e
  CCD22486.1  47 AESsDDDDDFGNFSDAsFEEDSMPIE---------KNTIT--TSETDNKTSMSTTLDNSALFSTILDDLFPDETSKAtlaiNDQLDMDSIKLSNLLENE 134
                 333488999****9874666652111.........11111..11222334555566677888999******99986644433333333333499***** PP

     DUF5102 105 rslsLwsqLvapP.plqppnWirSriRRlfLvsLGvPvdLDeiLpaskqkklvLPsleleseksssssrssrvkrlkqanasstsvdssasakksrsss 202
                 r + +++qLv     lqp  W++   R +    LG+  d  e+L + +q+++ + +l+ +  +s  +     ++ ++++ + ++s   +   k + + s
  CCD22486.1 135 RPHVIYQQLVDLDtILQPIIWKKTHLRSELFHLLGIS-DEAEMLKK-NQAREEIKPLNDTLYNSIMN----VINSKNPNAKGTSSLMLKDFFKLNYTPS 227
                 *********8875169*************9999***7.77899988.66666666675544222222....2222223333333333333333333333 PP

     DUF5102 203 srr.rgpppePelDlkaarrLcattdeaLkgltd.eeLkehvkeLeelteeasevLeYwlkrrDekigdkEafegvIenLVkharkv 287
                  r+    + e e   +++ +L++ ++ ++++ td   L+e   eL +   +  e L+ +++++ ++++dk ++e vI nL +h ++ 
  CCD22486.1 228 LRHaSLEKEEREEMEHRIPELINRKTMNISNETDiIGLQEYHDELCNSIDTIVEKLKSLKQEQKSLVNDKTTYENVITNLSGHTQRL 314
                 33323333333333467888888888888887773589*********************************************9985 PP

>> DUF719  Protein of unknown function (DUF719)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.9    0.0017        10      29      99 ..      16      89 ..       8     144 .. 0.61
   2 ?    6.1   0.0     0.002        12     123     168 ..     197     242 ..     190     247 .. 0.83
   3 ?    1.8   0.1      0.04   2.4e+02     117     132 ..     247     262 ..     245     303 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0017
      DUF719 29 gltavkekaesslgipspeelarieeesseeaeeekeekeeesaeke...ekeeesssssasagglgmvstitk 99
                g+++v+e+  +s+ +p +e +++ ++++s++ae++++  +  + ++    e++   ++++ ++ ++++ +++++
  CCD22486.1 16 GTSKVIESESNSIDAPASERIQEETRSNSNAAESSDDDDDFGNFSDAsfeEDSMPIEKNTITTSETDNKTSMST 89
                789999999999****9999944332223333333332222222222111222222222223333333333333 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.002
      DUF719 123 tmdvlqegdpglkkkkallleaekkptLsqvLreaKekeeqeekae 168
                  m+v++ ++p+ k +  l+l++  k +    Lr a  ++e++e+ e
  CCD22486.1 197 IMNVINSKNPNAKGTSSLMLKDFFKLNYTPSLRHASLEKEEREEME 242
                 7******************999999999999999987666665443 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.04
      DUF719 117 efiGkktmdvlqegdp 132
                 e+i +ktm++ +e d 
  CCD22486.1 247 ELINRKTMNISNETDI 262
                 899*******999984 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   1.0     0.017     1e+02      52      68 ..     209     251 ..     139     251 .. 0.54
   2 ?    7.8   2.8   0.00072       4.3       7      55 ..     270     324 ..     266     337 .] 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.017
        ZapB  52 k..........................eereawqerlkkLLgk 68 
                 k                          eere+++ r+  L+++
  CCD22486.1 209 KgtsslmlkdffklnytpslrhaslekEEREEMEHRIPELINR 251
                 1444444444444444444445555559********9999875 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00072
        ZapB   7 eqLEskiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlk......eer 55 
                 ++L ++i++ ++++++L++e + L  ++ ++++ + +l+   ++l+       +r
  CCD22486.1 270 DELCNSIDTIVEKLKSLKQEQKSLVNDKTTYENVITNLSGHTQRLQrdeielYNR 324
                 788899*********************************9999998544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1911  (0.106587); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2417.76
//
Query:       CCD22487.1  [L=915]
Description: hypothetical protein NDAI_0A03300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     9e-142  472.4  17.7     9e-142  472.4  17.7    4.4  4  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.1  15.6         1   1.8e+04      22      79 ..      71     125 ..      40     205 .. 0.56
   2 ?   -5.0  18.3      0.61   1.1e+04       5      74 ..     212     296 ..     207     354 .. 0.56
   3 ?   -9.6  14.7         1   1.8e+04      14     101 ..     374     476 ..     360     489 .. 0.59
   4 !  472.4  17.7    5e-146    9e-142       1     367 []     491     912 ..     491     912 .. 0.99

  Alignments for each domain:
  == domain 1  score: -13.1 bits;  conditional E-value: 1
  Haspin_kinase  22 ktshssLqkfsssssessssnkislPvkdqvsrdkikkklrnsesllslnsqeevkdf 79 
                    k+s    qk + +++ ++++  + +P+k+q   + ik+k +++++  s+ s+++  + 
     CCD22487.1  71 KSSSQPSQKQVLQQQLQHNQLPLRTPTKEQ--SKAIKTKSDEKKR-WSFMSTTSSSKK 125
                    555444555555666666666677777777..3344555444333.333333333221 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 0.61
  Haspin_kinase   5 lsleslksrssqsslkhktshssLqkf................sssssessssnkislPvkdqvsrdkikkklrnsesllslnsqe 74 
                    +s++s  ++ss+sslk  +  ssL+++                ++ ss+++++nk    ++++ s++++ k+l+++++l    s +
     CCD22487.1 212 SSSSSTHRKSSSSSLKRSSTGSSLRQLfnkivindskehqvksTQFSSSQENANKENNCTQNN-SQKQLPKQLQKQKQLNHSFSYS 296
                    344445678889999999999****999*****777777777733444444444444444444.4444444444444443222222 PP

  == domain 3  score: -9.6 bits;  conditional E-value: 1
  Haspin_kinase  14 ssqsslkhktshssLqkf.............sssssessssnkislPvkdqvsrdkikkklrnsesllslnsqeev..kdfdevilsqilelc.ki 93 
                    s +ss++  +s  s  kf             ss+ss+s s n is+P + +   +k  +  + s++l   +s ++     f+ + ++q l++  +i
     CCD22487.1 374 SDSSSISSMSSSNSKWKFwkrntsnnggflsSSTSSKSLSINDISSPYSIENNNNKF-NYNNPSTKLRNKSSFSDFhkPFFSSNSSTQNLSINtQI 468
                    33444444445556666678888888888988889999999******9877333333.33455666666666666552235556666777666344 PP

  Haspin_kinase  94 kkilnead 101
                    ++  ne++
     CCD22487.1 469 NTDQNETR 476
                    33333333 PP

  == domain 4  score: 472.4 bits;  conditional E-value: 5e-146
  Haspin_kinase   1 sssslsleslksrssqsslkhktshssLqkf........................sssssessssnkislPvkdqvsrdkikkklrnsesllslns 72 
                    s+s+ls+++l++rssqsslkhk+shssLqkf                        ss+ss+++s++ islP+ dqvsrdki++klrns+sllslns
     CCD22487.1 491 STSNLSIHALTHRSSQSSLKHKVSHSSLQKFktrrrssnngttganclnpnmddiSSHSSSINSNPLISLPTLDQVSRDKIQTKLRNSTSLLSLNS 586
                    89********************************************************************************************** PP

  Haspin_kinase  73 qeev....kdfdevilsqilelckikkilneadlasllnd.............seklssevyqtkekdkevvlKviplevledvtiskelslkelk 151
                    +++v    k++d++il+qil++c+i++i+ne+dl+sl+++             s+k+ss++y++++  k++++K+ipl++ +d+t+sk++slkelk
     CCD22487.1 587 SHTVimtkKQHDTSILQQILQYCDINYIINEYDLQSLHSNfnkhsiymltpqnSIKISSNIYKLRS--KQAICKIIPLGTPDDITTSKITSLKELK 680
                    ****9*************************************************************..99************************** PP

  Haspin_kinase 152 slklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeevklkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvt 247
                    +l+lvkgt +gl++llq+++l+++     +++++++l++kdkGt+L+++k+ +w+q+l+ifwq+v+i+yv+Etkf+FEHR+L+ld+iL+d+n+nvt
     CCD22487.1 681 MLHLVKGT-TGLPYLLQSYLLRSS-----TGNISMYLYMKDKGTPLSTFKFVNWDQVLNIFWQCVNIMYVSETKFQFEHRNLILDHILIDSNHNVT 770
                    ********.***************.....******************************************************************* PP

  Haspin_kinase 248 lidlklsRle..........ssegkvlytrlddpllFqGggDyqfeiYrlMrslls.............kswaefePrtNllwlhyLavkLlkkkn 320
                    +i+lk++R++          s++ ++l trld+pl+FqGggDyqfe+Y+lMrsl++             + w++f P+tNllwlhy+avkLl ++n
     CCD22487.1 771 FINLKCGRIKfdetlfpnsnSNTIEILSTRLDHPLFFQGGGDYQFETYNLMRSLFNglnvtsgnnkddeTIWDCFVPKTNLLWLHYIAVKLLLNNN 866
                    *****************99889999*********************************************************************** PP

  Haspin_kinase 321 kklnseaekrvkerleklaklldpaa...kkkkklfkrkeleiksagdlL 367
                    + +nse+  r+k  l+++a+l dpa+   k+k+k+++r++++i+s+gdlL
     CCD22487.1 867 NLPNSES--RIK--LNSIAQLSDPATllpKNKNKYSRRNDHNINSCGDLL 912
                    *999988..999..***********99*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2397  (0.133694); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.28s 00:00:01.26 Elapsed: 00:00:00.47
# Mc/sec: 5906.38
//
Query:       CCD22488.1  [L=817]
Description: hypothetical protein NDAI_0A03310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-32  110.0  17.4    1.7e-08   35.0   0.1    8.1  8  WD40         WD domain, G-beta repeat
    8.6e-15   54.8   0.2      0.027   14.8   0.0    6.0  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.9e-07   30.8   1.7        4.8    7.2   0.0    5.8  6  PD40         WD40-like Beta Propeller Repeat
    2.1e-07   30.6   1.9    2.1e-07   30.6   1.9    2.2  2  HIRA_B       HIRA B motif
    5.9e-06   26.2   0.0    3.4e-05   23.7   0.0    2.3  2  Hira         TUP1-like enhancer of split
    1.4e-05   25.1   0.8       0.62    9.9   0.1    4.4  6  eIF2A        Eukaryotic translation initiation factor eIF2A
    1.6e-05   24.4   0.0      0.018   14.4   0.0    3.0  3  WD40_like    WD40-like domain
     0.0003   19.8   0.0       0.36    9.7   0.0    3.8  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
  ------ inclusion threshold ------
      0.091   12.1   0.8       0.53    9.6   0.0    2.7  5  Nbas_N       Neuroblastoma-amplified sequence, N terminal
       0.49    9.1   3.2         11    4.6   0.2    3.2  3  DPPIV_N      Dipeptidyl peptidase IV (DPP IV) N-terminal regi


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.1e-07    0.0002      12      38 .]      16      45 ..       5      45 .. 0.84
   2 !   35.0   0.1   9.2e-12   1.7e-08       5      37 ..      72     105 ..      68     106 .. 0.88
   3 !   20.3   0.6   4.1e-07   0.00073       6      38 .]     136     169 ..     131     169 .. 0.89
   4 !   18.9   0.0   1.1e-06     0.002       3      37 ..     175     210 ..     173     211 .. 0.91
   5 ?    2.1   0.1      0.23     4e+02      15      27 ..     242     254 ..     233     283 .. 0.88
   6 !    8.6   0.0    0.0021       3.8      11      38 .]     311     330 ..     300     330 .. 0.83
   7 !    7.9   0.0    0.0035       6.3      11      36 ..     346     371 ..     337     371 .. 0.85
   8 ?   -2.6   0.1       6.8   1.2e+04      23      36 ..     682     694 ..     671     695 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.1e-07
                S...EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40 12 s...vtslafspdgawlasGsdDgtvriWd 38
                    v+ ++ spdg+ +a+G+ Dg++riW+
  CCD22488.1 16 RnyeVYTVDISPDGKKIATGGLDGKIRIWS 45
                1446999**********************5 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 9.2e-12
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  +   H +svt+++fspdg++lasGsdD+ + iW
  CCD22488.1  72 CSMNRHaGSVTCVKFSPDGKYLASGSDDRILLIW 105
                 555679888************************* PP

  == domain 3  score: 20.3 bits;  conditional E-value: 4.1e-07
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  l +H +++ ++a+ pd++ l++ + D++v +W+
  CCD22488.1 136 RLVAHdNDIQDIAWAPDSSILVTVGLDRSVIVWN 169
                 5789*999**************9888*******8 PP

  == domain 4  score: 18.9 bits;  conditional E-value: 1.1e-06
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +++ ++ H s+v ++ f+p +++++++sdD+t++++
  CCD22488.1 175 KVKRFDVHqSHVKGVIFDPANKYFITASDDRTLKVF 210
                 6778999*899***********************97 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.23
                 EEEEETTSSEEEE CS
        WD40  15 slafspdgawlas 27 
                  l++spdg+ +a+
  CCD22488.1 242 RLSWSPDGQHIAA 254
                 689******9985 PP

  == domain 6  score: 8.6 bits;  conditional E-value: 0.0021
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 +sv s+        +a+++ D++v iW+
  CCD22488.1 311 GSVESI--------IATAGQDKSVVIWS 330
                 349999........*************5 PP

  == domain 7  score: 7.9 bits;  conditional E-value: 0.0035
                 SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvri 36 
                 +s+t++++ pdg++l+  s D +v i
  CCD22488.1 346 KSITDMQWTPDGSMLFVTSLDSSVSI 371
                 78************987777999976 PP

  == domain 8  score: -2.6 bits;  conditional E-value: 6.8
                 SEEEEEETTSEEEE CS
        WD40  23 awlasGsdDgtvri 36 
                 +w ++   Dg++++
  CCD22488.1 682 TWCIATA-DGSLYL 694
                 6766555.999987 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00032      0.57      34      76 ..      13      55 ..       5      74 .. 0.85
   2 !    9.3   0.0   0.00074       1.3      35      69 ..      75     109 ..      66     117 .. 0.79
   3 !    8.4   0.0    0.0015       2.7      36      84 ..     139     186 ..     126     225 .. 0.89
   4 ?    3.6   0.0     0.045        81      38      59 ..     237     258 ..     191     278 .. 0.66
   5 !   14.8   0.0   1.5e-05     0.027      10      75 ..     317     382 ..     312     393 .. 0.75
   6 ?   -2.0   0.0       2.6   4.6e+03      12      27 ..     685     700 ..     683     728 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00032
  ANAPC4_WD40 34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76
                 e++++ ev  +  +pdgk +a +  dg++r+ +  + k v++ 
   CCD22488.1 13 EESRNYEVYTVDISPDGKKIATGGLDGKIRIWSLDNIKKVSHA 55
                 56778899999***********************998877664 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00074
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  + + ++v++++++pdgk La + +d  + +    +
   CCD22488.1  75 NRHAGSVTCVKFSPDGKYLASGSDDRILLIWTLDE 109
                  567889****************9998877766655 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0015
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekav 84 
                  ++d+ ++++aW pd ++L+ +  d +v + +  + + v+ ++v++++ v
   CCD22488.1 139 AHDNDIQDIAWAPDSSILVTVGLDRSVIVWNGTTFEKVKRFDVHQSH-V 186
                  68999*************************99999999999999884.4 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.045
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysd 59 
                      r L+W+pdg+ +a   + 
   CCD22488.1 237 TTYFRRLSWSPDGQHIAAPNAT 258
                  445679********99986554 PP

  == domain 5  score: 14.8 bits;  conditional E-value: 1.5e-05
  ANAPC4_WD40  10 iAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  iA a +d+++++  ++  r   ++ +  ++++++++W pdg++L v   d++v++l   + ++  +
   CCD22488.1 317 IATAGQDKSVVIWSTSKVRPILVAFEIANKSITDMQWTPDGSMLFVTSLDSSVSILAFDENELGVA 382
                  5666666666666555544444456678999************************99888776555 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 2.6
  ANAPC4_WD40  12 latedgellvfRlngq 27 
                  +at+dg+l++f  ngq
   CCD22488.1 685 IATADGSLYLFGYNGQ 700
                  6778888888888776 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.024        43      16      24 ..      25      33 ..      24      33 .. 0.92
   2 !    7.2   0.0    0.0027       4.8      12      24 ..      82      94 ..      74      94 .. 0.83
   3 ?   -3.7   0.0       7.3   1.3e+04      17      29 ..      97     109 ..      97     110 .. 0.84
   4 ?    3.3   0.0     0.047        84       2      23 ..     135     156 ..     134     157 .. 0.88
   5 !    6.4   0.0     0.005       8.9      15      24 ..     244     253 ..     242     253 .. 0.91
   6 ?    3.0   0.0     0.057     1e+02      16      27 ..     353     364 ..     352     364 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.024
                E-TTSSEEE CS
        PD40 16 fSPDGkrla 24
                +SPDGk++a
  CCD22488.1 25 ISPDGKKIA 33
                6******97 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0027
                EEEEE-TTSSEEE CS
        PD40 12 gaPsfSPDGkrla 24
                ++  fSPDGk+la
  CCD22488.1 82 TCVKFSPDGKYLA 94
                6677*******97 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 7.3
                 -TTSSEEEEEEEC CS
        PD40  17 SPDGkrlaFsSdR 29 
                 S D + l+++ d 
  CCD22488.1  97 SDDRILLIWTLDE 109
                 789999***9886 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.047
                 EE--SSSS.EEEEEE-TTSSEE CS
        PD40   2 krltntpgnegaPsfSPDGkrl 23 
                 krl+ ++ ++ ++++ PD + l
  CCD22488.1 135 KRLVAHDNDIQDIAWAPDSSIL 156
                 89999999**********9877 PP

  == domain 5  score: 6.4 bits;  conditional E-value: 0.005
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 s+SPDG+ +a
  CCD22488.1 244 SWSPDGQHIA 253
                 8******987 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.057
                 E-TTSSEEEEEE CS
        PD40  16 fSPDGkrlaFsS 27 
                 ++PDG++l  +S
  CCD22488.1 353 WTPDGSMLFVTS 364
                 9****9998776 PP

>> HIRA_B  HIRA B motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       4.4   7.9e+03       8      12 ..      27      31 ..      25      31 .. 0.86
   2 !   30.6   1.9   1.2e-10   2.1e-07       1      18 [.     474     491 ..     474     493 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.4
      HIRA_B  8 KdGKK 12
                +dGKK
  CCD22488.1 27 PDGKK 31
                7***9 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 1.2e-10
      HIRA_B   1 KQkvTitKdGKKRVaPtL 18 
                 K+++Ti+KdGKKRVaPtL
  CCD22488.1 474 KMNKTIMKDGKKRVAPTL 491
                 89***************9 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.1   1.9e+03      10      58 ..     365     416 ..     359     443 .. 0.69
   2 !   23.7   0.0   1.9e-08   3.4e-05       2     101 ..     700     803 ..     699     813 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.1
        Hira  10 lespasfLessgsyLla.v...tsvgllyvWnvkkkkvllppvslapllssss 58 
                 l+s++s+L++ ++ L + v    +  +l+ + v+k ++ + p+s+++ll +  
  CCD22488.1 365 LDSSVSILAFDENELGVaVpleKNYDQLHRYGVDKDSLDF-PESIQQLLLDDV 416
                 7777777777775554313222234578999999999999.889988887644 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 1.9e-08
        Hira   2 rrllPplvlespasfLessgsyLlavtsvgllyvWnvkkkkvllppvslapllssssrssekeltrapavtsasltsnG....vpivtlsn.gdgylyd 95 
                 +   P+l ++ +++ ++++++yL+++   gl++ W++k+ k++l+   + p++++   +  ++   + +++ ++l+ +G    + iv l++ + +y + 
  CCD22488.1 700 QLRTPKLNVGHKIVKMKCQENYLIVLVDRGLFFAWDLKTLKLILKDIPILPIINNIPIK-GSKVRISRSIQRFFLSVEGekdlSLIVELTEpRRTYRWA 797
                 556799***********************************************985544.455778888888888888833333566665434566666 PP

        Hira  96 kslktW 101
                 + l++W
  CCD22488.1 798 SVLGCW 803
                 666666 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0066        12     103     144 ..      20      58 ..       9      73 .. 0.76
   2 ?   -0.7   0.0      0.62   1.1e+03     144     159 ..      79      94 ..      57      99 .. 0.76
   3 !    8.3   0.1    0.0011       1.9     101     161 ..     142     201 ..      95     202 .. 0.61
   4 !    9.9   0.1   0.00034      0.62     103     169 ..     144     209 ..     130     224 .. 0.79
   5 ?   -2.1   0.0       1.7     3e+03     149     159 ..     243     253 ..     232     264 .. 0.81
   6 ?    3.1   0.0     0.042        75      53      85 ..     340     371 ..     275     391 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0066
                 --EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-T CS
       eIF2A 103 rNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaa 144
                   t+  sp gk ++++G   l G++ iw  +++kk+++a ++
  CCD22488.1  20 VYTVDISPDGKKIATGG---LDGKIRIWSLDNIKKVSHALKS 58 
                 45788899999999988...57*************9987544 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.62
                 TT--EEEE-TTSSEEE CS
       eIF2A 144 anatlvewspdgryvl 159
                    t v++spdg+y++
  CCD22488.1  79 GSVTCVKFSPDGKYLA 94 
                 4456679999999986 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0011
                 ES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--E..EEE-TTSSEEEEE CS
       eIF2A 101 qkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatl..vewspdgryvlTa 161
                 +    i + p   ++++ G+      + +w+ ++++k+++++  ++ +  v ++p+ +y++Ta
  CCD22488.1 142 NDIQDIAWAPDSSILVTVGLDRS---VIVWNGTTFEKVKRFDVHQSHVkgVIFDPANKYFITA 201
                 33345666666666666666544...6666666666666665554432225666666666666 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00034
                 --EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--E..EEE-TTSSEEEEEE-TTT-SS CS
       eIF2A 103 rNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatl..vewspdgryvlTattaprlrv 169
                    i + p   ++++ G+      + +w+ ++++k+++++  ++ +  v ++p+ +y++Ta+    l+v
  CCD22488.1 144 IQDIAWAPDSSILVTVGLDRS---VIVWNGTTFEKVKRFDVHQSHVkgVIFDPANKYFITASDDRTLKV 209
                 557899999999999998775...999*********99987776542389***********98766555 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.7
                 EEE-TTSSEEE CS
       eIF2A 149 vewspdgryvl 159
                 + wspdg++++
  CCD22488.1 243 LSWSPDGQHIA 253
                 57999999986 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.042
                 ECCEESSS.EEEEEE-TTSS-EEEEESSSSCEE CS
       eIF2A  53 vvelkkegpihdvaWspkskefaviyGkmpakv 85 
                  +e+ ++  i d++W p+++ + v   ++  ++
  CCD22488.1 340 AFEIANK-SITDMQWTPDGSMLFVTSLDSSVSI 371
                 3445555.3666666666666666555555555 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   9.8e-06     0.018       2      36 ..      19      53 ..      18      63 .. 0.92
   2 ?   -2.7   0.0       1.6   2.9e+03       5      32 ..      83     110 ..      80     114 .. 0.82
   3 !    6.3   0.0     0.003       5.3      96     168 ..     684     753 ..     672     760 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.8e-06
   WD40_like  2 eiYsidiskkgslilyGgkddkctvlkleslesvs 36
                e+Y++dis++g+ i+ Gg d k+++ +l++ ++vs
  CCD22488.1 19 EVYTVDISPDGKKIATGGLDGKIRIWSLDNIKKVS 53
                9*****************************99887 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.6
   WD40_like   5 sidiskkgslilyGgkddkctvlklesl 32 
                  + +s++g++++ G++d  + + +l+ +
  CCD22488.1  83 CVKFSPDGKYLASGSDDRILLIWTLDED 110
                 5789999999999999999888888766 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.003
   WD40_like  96 liGtnkGsiyvfskdlqleevllgqsseIkeikiennkiysLsesa.fivfdlfsqnieykisvkdiktfeiie 168
                  i t  Gs+y+f  + ql++  l+ + +I ++k ++n++  L++   f ++dl++     k+ +kdi ++ ii+
  CCD22488.1 684 CIATADGSLYLFGYNGQLRTPKLNVGHKIVKMKCQENYLIVLVDRGlFFAWDLKT----LKLILKDIPILPIIN 753
                 689********77777777777777778***************986267788877....566666666666664 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0017         3     189     216 ..      19      46 ..       8      55 .. 0.82
   2 !    9.7   0.0    0.0002      0.36     155     216 ..      41     107 ..      40     117 .. 0.71
   3 ?   -0.5   0.0      0.27   4.8e+02      67     128 ..     185     247 ..     129     271 .. 0.64
   4 ?    0.3   0.0      0.15   2.8e+02     182     212 ..     339     370 ..     302     376 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0017
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqv 216
                 ++ +  +spdG  +at   dG+++ + +
  CCD22488.1  19 EVYTVDISPDGKKIATGGLDGKIRIWSL 46 
                 6778889*****************9975 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0002
    Ge1_WD40 155 aeiwsvdmias.kygs..gelsve.eieegllkieehs.liveaafspdGtalatasedGevkffqv 216
                 + iws+d i++  +    +e +v+ + ++ l  +++h+  +++  fspdG  la  s d ++  + +
  CCD22488.1  41 IRIWSLDNIKKvSHALksIEQQVDpDWKTPLCSMNRHAgSVTCVKFSPDGKYLASGSDDRILLIWTL 107
                 6789888876523444114444442456689999999889*****************9988776655 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.27
    Ge1_WD40  67 evldlafahvsskillavdekgslfvykveeveskllvslllkveapietv..vsesdrviWCP 128
                 +v+ + f   ++  + a d    l v++ +++++++   +   +++p e+   ++ ++r++W P
  CCD22488.1 185 HVKGVIFDPANKYFITASD-DRTLKVFRYHKTSGDISFTIEHIISDPFEDSplTTYFRRLSWSP 247
                 4444444444444444433.34567777777777776666666666665531134556677766 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.15
    Ge1_WD40 182 lkieehs.liveaafspdGtalatasedGevk 212
                 + +e     i++  ++pdG  l ++s d  v 
  CCD22488.1 339 VAFEIANkSITDMQWTPDGSMLFVTSLDSSVS 370
                 44443332699999999999999999998875 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00029      0.53     228     266 ..      16      54 ..       1      68 [. 0.75
   2 ?   -3.2   0.0       2.3   4.1e+03     232     263 ..      81     112 ..      74     117 .. 0.75
   3 ?   -2.9   0.0       1.8   3.3e+03     230     265 ..     142     177 ..     135     192 .. 0.75
   4 ?   -3.2   0.0       2.4   4.2e+03      46      62 ..     240     256 ..     236     269 .. 0.62
   5 ?   -2.5   0.0       1.4   2.4e+03     230     256 ..     346     372 ..     303     377 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00029
      Nbas_N 228 ekdgvfkmslspdgtllavihfsgklsiwdipslkqrge 266
                  +  v+ + +spdg ++a+  + gk+ iw++  +k+ ++
  CCD22488.1  16 RNYEVYTVDISPDGKKIATGGLDGKIRIWSLDNIKKVSH 54 
                 455799**************************9998654 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.3
      Nbas_N 232 vfkmslspdgtllavihfsgklsiwdipslkq 263
                 v  + +spdg  la       l iw++   +q
  CCD22488.1  81 VTCVKFSPDGKYLASGSDDRILLIWTLDEDHQ 112
                 55677899999999988888888888766555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.8
      Nbas_N 230 dgvfkmslspdgtllavihfsgklsiwdipslkqrg 265
                 + +  ++ +pd ++l ++ +  ++ +w+  ++++  
  CCD22488.1 142 NDIQDIAWAPDSSILVTVGLDRSVIVWNGTTFEKVK 177
                 456677889999999999999999999877776544 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 2.4
      Nbas_N  46 wrrvawshdctllayae 62 
                 +rr++ws d   +a  +
  CCD22488.1 240 FRRLSWSPDGQHIAAPN 256
                 56666666655555444 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 1.4
      Nbas_N 230 dgvfkmslspdgtllavihfsgklsiw 256
                   +  m  +pdg++l v  +  ++si 
  CCD22488.1 346 KSITDMQWTPDGSMLFVTSLDSSVSIL 372
                 567889999999999999988888876 PP

>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.77   1.4e+03      46     116 ..      82      94 ..      58     100 .. 0.69
   2 ?    4.6   0.2    0.0062        11     167     207 ..     125     165 ..     116     225 .. 0.79
   3 ?    2.9   0.2     0.022        39     107     202 ..     244     364 ..     238     374 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.77
                 SEEEEESSTTEEEEEETTEEEEESTTTSEEEECES-STTTEEESB--HHHHHHTSSSSBEEEE-TTSSEEE CS
     DPPIV_N  46 qlakwSPagdklafvrnnnLyvrelatgkeiqlTsdgsagifnGvadWvyeEEvlgsnsavwWspdgsrla 116
                 +                                                           v +spdg++la
  CCD22488.1  82 TC----------------------------------------------------------VKFSPDGKYLA 94 
                 44..........................................................44555555554 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0062
                 TSCEEECS-HHHHCTTCEEEEEEEECTTSCCEEEEEEETTS CS
     DPPIV_N 167 sgktvevqlpdslsekdeyitrvkWtsdeksllvqwlnRsq 207
                 ++++ ++++ ++l + d+ i++++W++d+  l+++ l+Rs 
  CCD22488.1 125 EKEKERWNVRKRLVAHDNDIQDIAWAPDSSILVTVGLDRSV 165
                 455568999999******************99999999975 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.022
                 EE-TTSSEEEEEEEECTTS-EEEEEESSSSC-...................SS-EEEEEE--BTTS---EEEEEEEECTTSCEE.......ECS-HHHH CS
     DPPIV_N 107 wWspdgsrlaylrfdeseVpeitlpsytdees...................qypevksikYPkaGsknpkVelkvvdlasgktv.......evqlpdsl 179
                  Wspdg+++a        V  + + + +  +s                       +++ +Y k  ++n +Ve  ++ + + k+v          +  ++
  CCD22488.1 244 SWSPDGQHIAAPNATNGPVSAVAIIDRGTWTSnislighdaptevvrfnprLFEVDTKANY-KQENNNGSVESIIATAGQDKSVviwstskVRPILVAF 341
                 5777777777666666666666666555555555555555555555555544444444445.5556666777777777444444466666322233456 PP

                 CTTCEEEEEEEECTTSCCEEEEE CS
     DPPIV_N 180 sekdeyitrvkWtsdeksllvqw 202
                 + + + it+++Wt+d+  l v+ 
  CCD22488.1 342 EIANKSITDMQWTPDGSMLFVTS 364
                 66788888888888888665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (817 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 5610.93
//
Query:       CCD22489.1  [L=778]
Description: hypothetical protein NDAI_0A03320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.3e-157  524.2   0.0     4e-157  523.9   0.0    1.1  1  Aconitase    Aconitase family (aconitate hydratase)
    1.4e-43  148.3   0.0    2.6e-43  147.5   0.0    1.5  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.9   0.0  4.4e-161    4e-157       1     461 []      14     471 ..      14     471 .. 0.97

  Alignments for each domain:
  == domain 1  score: 523.9 bits;  conditional E-value: 4.4e-161
   Aconitase   1 ekiwdahlvee..eg..iayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefLksaak 95 
                 +k++d+h+v++  +g  ++y+ dr+++++vt +qa+++l+  +++vrr ++tlat+dh++p+d     s ++ +++++ ++++ +r   ++++L+++ +
  CCD22489.1  14 DKVFDHHVVHKddNGsyLLYI-DRHIIHEVTTPQAFEGLKDNGRPVRRSDCTLATVDHNIPTD-----SRKNFKSVDTFIKQADSR--LQVKTLEKNVA 104
                 6999***99553344667777.*****************************************.....666678899999999999..*********** PP

   Aconitase  96 afgirvvppg...qGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigk 191
                 +++i ++ +    qGIvH++++E+g++lpg tvv++DSHT+++g++G+la+G+G++e+e+vl++q+l +++ k++++ ++Gkl++gvt+kDl+l++ig 
  CCD22489.1 105 EHDIPYFGMTeirQGIVHMIGPEQGFILPGCTVVCGDSHTSTHGAFGCLAFGIGTSEVEHVLATQTLIQTRSKNMRILVNGKLSPGVTSKDLILHIIGL 203
                 **99998888888************************************************************************************** PP

   Aconitase 192 lrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaavlveaydkaqalf.elaadedaeydkvleldlstlep 289
                 ++++g++g+v+Ef+Ge++e+Ls+e+r++++NM++E+GA++g++++dekt+eYLk  gr+ ++ ++++++k  a + +l++de+a++d+++ +  s++ p
  CCD22489.1 204 IGTAGGTGCVIEFAGEAIEDLSMEARMSMCNMSIEAGARAGMIKPDEKTFEYLK--GRPLVP-TGAEWEKGLAFWkTLHSDEGAKFDHEIVIKGSAIIP 299
                 ******************************************************..******.7***********88********************** PP

   Aconitase 290 svagpkrPqdavplselvk.k.efkeelekeaaekaley.klkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgv.ktsvaPGS 384
                 +++++++Pqda+p++ +v+ + ++++ +++ ++e+al+y +l+++t+l+ +k+d+++igSCTN+++ed+raaa++++     g ++++++ +++v+PGS
  CCD22489.1 300 TITWGTSPQDALPITASVPdPaKVEDPIRRGDMERALQYiGLEPNTPLQSIKIDKVFIGSCTNARIEDLRAAAKVVD-----GYHIADNImRAMVVPGS 393
                 ******************97569******************************************************.....*******99******** PP

   Aconitase 385 evvkayleaeGlleiLekaGfevvgagCstCig.nsdrleegeaivsssNRNFegRqgpntrayLaSPelvvaaAlaG 461
                 + vka++e eGl++i+ +aGfe+++agCs+C+g n+d l++ge+++s+sNRNFegRqgp++r++L+SP +++aaA+aG
  CCD22489.1 394 GLVKAQAEDEGLDQIFLRAGFEWREAGCSMCLGmNPDILQPGERCASTSNRNFEGRQGPRSRTHLMSPVMAAAAAIAG 471
                 *****************************************************************************9 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   0.0   2.9e-47   2.6e-43       1     130 [.     542     668 ..     542     669 .. 0.96

  Alignments for each domain:
  == domain 1  score: 147.5 bits;  conditional E-value: 2.9e-47
                  CCCCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHH CS
  Aconitase_C   1 mekllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalr 98 
                  m+ +l l  ++++++ksnvdtd++ipkqf++ti+++gl+  l++e+r++k+ + +d e++d+v+++e+++   a+++v++g+nfG+GSSRehA++al+
   CCD22489.1 542 MKPFLSLCSIAAPLDKSNVDTDAIIPKQFLKTIKRTGLKVGLFYEWRFKKDAQGKD-EETDFVLNVEPWR--HAEILVVTGNNFGCGSSREHAPWALK 636
                  67788889999******************************************999.777**********..9************************* PP

                  HTTEEEEEES-B-HHHHHHHHHTT-EEEEEST CS
  Aconitase_C  99 llGikaviaeSFerIfennliknglLplefke 130
                  ++Gi+ +ia+SF++If+nn +knglLp+++++
   CCD22489.1 637 DFGIQSIIAPSFGDIFYNNCFKNGLLPIRIPQ 668
                  *****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 5331.40
//
Query:       CCD22490.1  [L=1226]
Description: hypothetical protein NDAI_0A03330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-35  120.7   5.0    5.5e-12   45.1   0.1    4.3  4  SH3_1     SH3 domain
    1.7e-32  111.1   7.2    3.5e-12   46.0   0.3    4.3  4  SH3_9     Variant SH3 domain
    3.9e-32  109.9   0.0    7.7e-32  108.9   0.0    1.5  1  SHD1      SLA1 homology domain 1, SHD1
    5.8e-30  102.7   0.1    2.1e-08   33.7   0.0    4.6  4  SH3_2     Variant SH3 domain
    0.00015   21.7   0.0    0.00044   20.2   0.0    1.7  2  SAM_4     SAM domain (Sterile alpha motif)
  ------ inclusion threshold ------
       0.11   13.0   0.0        0.2   12.1   0.0    1.4  1  SAM_1     SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   8.5e-14   2.5e-10       1      38 [.       9      47 ..       9      62 .. 0.90
   2 !   34.3   0.1   4.2e-12   1.3e-08       1      47 [.      75     123 ..      75     124 .. 0.98
   3 !   45.1   0.1   1.8e-15   5.5e-12       1      48 []     375     423 ..     375     423 .. 0.97
   4 ?    0.3   0.0      0.19   5.6e+02      14      28 ..     716     730 ..     711     733 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 8.5e-14
                EESSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEET CS
       SH3_1  1 iAlYDYeaeesdELsfkkGDviivleksed.gWwkgrlk 38
                +A+YDYe+++++EL +k++D + +lekse  +Ww+++ +
  CCD22490.1  9 KAIYDYEPQTPEELELKENDLLYLLEKSEVdDWWTVKKR 47
                7***********************************976 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 4.2e-12
                 EESSSBEXSS..TTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEE CS
       SH3_1   1 iAlYDYeaee..sdELsfkkGDviivleksedgWwkgrlkgtgkeGliP 47 
                 +AlYDYe+ +  ++EL f+++D + v ++++ +W+ ++++ ++++G++P
  CCD22490.1  75 KALYDYEQIQnpEEELIFHENDLFSVYDDKDPDWLLVKSQISNEVGFVP 123
                 7*********99************************************* PP

  == domain 3  score: 45.1 bits;  conditional E-value: 1.8e-15
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksed.gWwkgrlkgtgkeGliPs 48 
                 ++l D+ ae+ dEL+ k+GD++ +l+++++ +Ww ++l  tg++G +P+
  CCD22490.1 375 RVLVDFIAESNDELTVKEGDMVYILNDKKSkDWWMCELVKTGEKGVVPA 423
                 5799********************************************6 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.19
                 XEBSTTEEEEEEEEC CS
       SH3_1  14 LsfkkGDviivleks 28 
                 L +++GD++ v +  
  CCD22490.1 716 LGLREGDIVRVMKYL 730
                 889*******98865 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.3   1.2e-15   3.5e-12       1      49 []      10      66 ..      10      66 .. 0.90
   2 !   27.0   0.2     1e-09   3.1e-06       1      49 []      76     128 ..      76     128 .. 0.90
   3 !   39.4   0.0   1.4e-13   4.1e-10       1      49 []     376     427 ..     376     427 .. 0.94
   4 ?   -1.4   0.0      0.72   2.1e+03      13      24 ..     716     727 ..     715     731 .. 0.86

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 1.2e-15
       SH3_9  1 AlypyepreddeLsLqrGDvitvieese.dgWlegs......l.tGrtGlvPanyve 49
                A+y+yep+ ++eL+L ++D ++++e+se d+W+ ++        ++  GlvP+ny+e
  CCD22490.1 10 AIYDYEPQTPEELELKENDLLYLLEKSEvDDWWTVKkrvigsDaEEPVGLVPSNYIE 66
                89**********************99888******87666643788*********97 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 1e-09
       SH3_9   1 Alypye.predd.eLsLqrGDvitvieesedgWlegs.l.tGrtGlvPanyve 49 
                 Aly+ye  ++++ eL + ++D + v ++ +++Wl+++ + + + G+vP nyv+
  CCD22490.1  76 ALYDYEqIQNPEeELIFHENDLFSVYDDKDPDWLLVKsQiSNEVGFVPGNYVQ 128
                 89***987888846************999*******9537************7 PP

  == domain 3  score: 39.4 bits;  conditional E-value: 1.4e-13
       SH3_9   1 AlypyepreddeLsLqrGDvitvi.eesedgWlegsl..tGrtGlvPanyve 49 
                 +l ++ + + deL + +GD ++++ ++ + +W+ ++l  tG++G+vPa+++e
  CCD22490.1 376 VLVDFIAESNDELTVKEGDMVYILnDKKSKDWWMCELvkTGEKGVVPAQFIE 427
                 789*********************7779********778***********97 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.72
       SH3_9  13 LsLqrGDvitvi 24 
                 L L++GD+++v+
  CCD22490.1 716 LGLREGDIVRVM 727
                 679******996 PP

>> SHD1  SLA1 homology domain 1, SHD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.9   0.0   2.6e-35   7.7e-32       2      66 ..     505     569 ..     504     570 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.9 bits;  conditional E-value: 2.6e-35
        SHD1   2 kskPdpakvRtWtDrtgsFkVeAeflglkdgkirLhkvnGvkiaVpvekmskeDleyvekvtgks 66 
                 k++P+p+k+R W+Dr+g+FkVeA+f+g+++gki+Lhk+nGvkiaV+++k+s +Dl yve+vtg s
  CCD22490.1 505 KEFPNPKKTRLWVDRSGTFKVEAQFIGCAEGKIHLHKANGVKIAVAASKLSDDDLLYVERVTGFS 569
                 789***********************************************************987 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0     7e-11   2.1e-07       2      56 ..       8      67 ..       7      68 .. 0.84
   2 !   26.3   0.0   1.4e-09   4.2e-06       2      57 .]      74     130 ..      73     130 .. 0.88
   3 !   33.7   0.0     7e-12   2.1e-08       2      56 ..     374     428 ..     373     428 .. 0.95
   4 !    6.6   0.0    0.0021       6.2       6      29 ..     706     735 ..     704     756 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 7e-11
                EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCE........EEEEGCGEEE CS
       SH3_2  2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrv........GlfPsslvee 56
                ++ai dy+++ ++eL++k++d++++l   +++ d+ww + + ++         Gl+Ps++ ee
  CCD22490.1  8 YKAIYDYEPQTPEELELKENDLLYLL--EKSEVDDWWTVKK-RVIgsdaeepvGLVPSNYIEE 67
                9*************************..5557779999988.33344488888*******998 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 1.4e-09
                 EEESS-B-S..CGCCB--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGEEEE CS
       SH3_2   2 vraiedyvg..edkseLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslveeq 57 
                 v+a+ dy++  ++++eL f+++d++ v+   + ++++w ++ +   + vG++P ++v+++
  CCD22490.1  74 VKALYDYEQiqNPEEELIFHENDLFSVY---DDKDPDWLLVKSqiSNEVGFVPGNYVQPV 130
                 6889999998455555************...99999*****99788************85 PP

  == domain 3  score: 33.7 bits;  conditional E-value: 7e-12
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGEEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslvee 56 
                 +r++ d+ +e+++eL+ k+Gd +++l   +k+s +ww +e    G +G++P ++ e+
  CCD22490.1 374 ARVLVDFIAESNDELTVKEGDMVYIL--NDKKSKDWWMCELvkTGEKGVVPAQFIEP 428
                 58999*********************..***********99999********99875 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0021
                 S-B-SCGCCB--B-TTEEEEEE........ CS
       SH3_2   6 edyvgedkseLsfkkGdvikvls......l 29 
                 +d++++  + L +++Gd+++v        +
  CCD22490.1 706 QDINSSMLRTLGLREGDIVRVMKyldkkfG 735
                 6889999999***********953333322 PP

>> SAM_4  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       5.5   1.7e+04      41      69 ..     376     403 ..     369     412 .. 0.68
   2 !   20.2   0.0   1.5e-07   0.00044      10      70 ..     673     732 ..     668     748 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5.5
       SAM_4  41 mlldlskeimnelgitvvgdiiailkhak 69 
                 +l+d+  e   el +   gd++ il+  k
  CCD22490.1 376 VLVDFIAESNDELTVK-EGDMVYILNDKK 403
                 5666666666666654.489999987655 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.5e-07
       SAM_4  10 ewiqffkeagipaglavnyavsfvdnriqknmlldlskeimnelgitvvgdiiailkhakv 70 
                 +w +ff ++g+       y++ f  ++i  +m+ d++  ++  lg+   gdi+ ++k+  +
  CCD22490.1 673 DWFEFFLNTGVDVNNCQRYTINFDREQITEDMMQDINSSMLRTLGLR-EGDIVRVMKYLDK 732
                 8********************************************97.6******998654 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.6e-05       0.2      16      61 ..     687     731 ..     674     733 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.6e-05
                 TSGGGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHHHHH CS
       SAM_1  16 glgqYadlFrageidgdaLlllteddLeklgvtllGHrkkIlyaIq 61 
                 ++++Y+ +F ++ i+ d++++++++ L+ lg +  G+  + +++++
  CCD22490.1 687 NCQRYTINFDREQITEDMMQDINSSMLRTLGLRE-GDIVRVMKYLD 731
                 79******************************98.99999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1223  (0.0682135); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 8458.64
//
Query:       CCD22491.1  [L=200]
Description: hypothetical protein NDAI_0A03340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-35  122.3   1.1    1.6e-35  121.8   0.4    1.6  2  Rsc14     RSC complex, Rsc14/Ldb7 subunit
  ------ inclusion threshold ------
      0.018   14.6   0.1      0.029   13.9   0.1    1.3  1  NTR2      Nineteen complex-related protein 2


Domain annotation for each model (and alignments):
>> Rsc14  RSC complex, Rsc14/Ldb7 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.4   1.8e-39   1.6e-35       1      99 []      24     118 ..      24     118 .. 0.94
   2 ?   -2.7   0.0       1.2   1.1e+04      41      55 ..     157     171 ..     146     177 .. 0.54

  Alignments for each domain:
  == domain 1  score: 121.8 bits;  conditional E-value: 1.8e-39
       Rsc14   1 sYYdvisgLsaleksekvslskeeLkeLvkkekekrkkkdeeekkkkkekkkrvavhgYlggkvdlkeaseaaYdlshtLLGgyvPkkqLesLssvdFa 99 
                 sYYdvisgL+ale+s+++++s++eL +L++++k+ rk+k+e++k    ++  r ++h+Ylgg+++++++++  Yd+shtLLG++vPk+qLe+Lss+dFa
  CCD22491.1  24 SYYDVISGLAALERSHQITFSQDELLQLTENSKKVRKSKNEKRKII--DTAVRPTIHSYLGGTINVTDKTN--YDVSHTLLGNHVPKSQLETLSSIDFA 118
                 7************************************999987644..5667***************9986..*************************8 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
       Rsc14  41 eeekkkkkekkkrva 55 
                 +++k+ +k k ++v+
  CCD22491.1 157 DTNKEGEKAKVRKVI 171
                 222222234445554 PP

>> NTR2  Nineteen complex-related protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   3.2e-06     0.029     193     222 ..      44      75 ..      37      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.2e-06
        NTR2 193 feDekLeLtes..qisiqkdekReiieeaind 222
                  +De L+Lte+  ++ + k+ekR+ii+ a+  
  CCD22491.1  44 SQDELLQLTENskKVRKSKNEKRKIIDTAVRP 75 
                 49********944578889*********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1107  (0.0617435); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1487.96
//
Query:       CCD22492.1  [L=371]
Description: hypothetical protein NDAI_0A03350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2811.12
//
Query:       CCD22493.1  [L=470]
Description: hypothetical protein NDAI_0A03360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.3e-181  602.1  30.9     6e-181  601.9  30.9    1.0  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
  ------ inclusion threshold ------
       0.13   11.6   0.1        0.2   11.0   0.1    1.2  1  CytoC_RC    Photosynthetic reaction centre cytochrome C subun


Domain annotation for each model (and alignments):
>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  601.9  30.9  6.7e-185    6e-181       2     432 .]      32     470 .]      31     470 .] 0.99

  Alignments for each domain:
  == domain 1  score: 601.9 bits;  conditional E-value: 6.7e-185
  ERG4_ERG24   2 eieyefggeigalgikiglpvlelylnaiskfealklllpksldlaelkneikeldllvfegaiwerklftvfllfyvlqavlylllpGkvveGleLs. 99 
                 eieyefgg+ g++g+ ig+p+l++y++  ++f++ +++lp+    +++ ++i +l++l +e+++++r+++t+f +f++ q+ +y++lpG++++G++L  
  CCD22493.1  32 EIEYEFGGTLGVVGMLIGFPLLMYYMWISAQFYNGSIALPAEN--QSWSEFIVHLYNLFLENGVPTRYAWTIFSTFWAAQIAFYYTLPGIWTKGQPLTh 128
                 799*************************************998..9***************************************************99 PP

  ERG4_ERG24 100 .ngkkLkYkinalaslllvlaillvlqvtelfeltvlidnfvqlisvailfafalaivlYvrslkvkerkkdkqlaaggvsGnliYDffiGreLnPRlg 197
                  n+k+L+Y++na+++l++ +a++l l++t +f+l+++id f+q++++ai+++fa++i lY+++l++++       ++++++Gn++YDff+G++LnPR+g
  CCD22493.1 129 lNNKQLPYFCNAMWTLYTSTALILGLHFTGIFKLYTIIDIFGQIMTCAIISGFAFSIGLYLWTLFISH-------DYHRMTGNHLYDFFMGAPLNPRWG 220
                 9*******************************************************************.......8*********************** PP

  ERG4_ERG24 198 slDlkmFlelRlgllllllinlaallkqyklygkvtdslllvllaqllYvfdgvkneeavlttmDittdgFGFmLaFgdlvlvPftYslqtlYLsvh.P 295
                 +lDlkmF+e+Rl++++l++i+l+a+lkqy++yg+vt++l +++la++lY+++++k+ee++++t+D+++++FGFmL+F+++++vP+tY+++tlYL++h P
  CCD22493.1 221 ILDLKMFFEVRLPWFTLYFITLGACLKQYEMYGYVTPQLGVIMLAHWLYANACAKGEELIVPTWDMAYEKFGFMLIFWNIAGVPYTYCHCTLYLIYHdP 319
                 *************************************************************************************************** PP

  ERG4_ERG24 296 selgwst.vlvailvvlligyyiFrsansqknnFR...........tnPedpklkl..lkyiqtktGskLlvsGWyglarkinYlgDwlqslswsLatg 380
                 se++wst ++++++v+ll++yy+F++an+qkn+FR           t+P++p+++l  +ky++t++Gs Ll++GWy+ +rki+Y++Dw+qsl w+La+g
  CCD22493.1 320 SEYQWSTtYNISLYVMLLVAYYFFDTANAQKNAFRkqmsgdktvrkTFPFLPYQILknPKYMKTSNGSLLLIDGWYTWVRKIHYTADWTQSLIWALACG 418
                 *******9********************************************987666***************************************** PP

  ERG4_ERG24 381 fqsvlpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkvpykiipyvy 432
                 f+s++p+f++++F+v+L+hR+ RD+ kC++kYG+dw +Y+k++py +ipyv+
  CCD22493.1 419 FNSIFPWFFPIFFIVVLLHRANRDQIKCQRKYGDDWKKYCKHCPYIFIPYVF 470
                 ***************************************************8 PP

>> CytoC_RC  Photosynthetic reaction centre cytochrome C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   2.2e-05       0.2     206     263 ..     284     341 ..     273     364 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.2e-05
    CytoC_RC 206 ikqaektyglmmhlskslGvnCtfChnsrafadwdqstpqratalygirmvrdlnady 263
                 +  a + +g+m+ + +  Gv  t+Ch +  +   d s+ q+ t++     v  l a y
  CCD22493.1 284 WDMAYEKFGFMLIFWNIAGVPYTYCHCTLYLIYHDPSEYQWSTTYNISLYVMLLVAYY 341
                 5567788**********************************99876555565555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3205.13
//
Query:       CCD22494.1  [L=862]
Description: hypothetical protein NDAI_0A03370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-15   55.4  11.9    6.1e-11   42.6   0.0    7.4  7  HEAT_EZ          HEAT-like repeat
    4.7e-12   45.1  19.2     0.0011   19.1   0.1    9.1  9  HEAT             HEAT repeat
    1.4e-11   44.1   7.4    1.8e-11   43.8   1.9    3.8  3  IBN_N            Importin-beta N-terminal domain
    1.5e-05   24.7   1.4        2.5    7.6   0.0    5.2  7  CLASP_N          CLASP N terminal
    1.5e-05   25.3   7.8      0.023   15.1   0.0    5.8  6  HEAT_2           HEAT repeats
    0.00041   20.3   8.6      0.021   14.8   0.1    5.4  6  Arm              Armadillo/beta-catenin-like repeat
     0.0021   18.1   7.8      0.059   13.4   0.0    4.8  5  Cnd1             non-SMC mitotic condensation complex subunit
  ------ inclusion threshold ------
      0.083   12.8   0.5        1.6    8.6   0.0    3.3  3  Sec7_N           Guanine nucleotide exchange factor in Golgi 
       0.13   11.4   1.3        5.8    6.0   0.7    2.5  2  AI-2E_transport  AI-2E family transporter
       0.16   12.2   1.3       0.37   10.9   1.3    1.6  1  DUF3347          Protein of unknown function (DUF3347)
       0.29   10.9   9.2       0.26   11.0   0.4    3.8  4  TIP120           TATA-binding protein interacting (TIP20)
       0.46   11.0   3.7        4.8    7.7   0.0    4.4  5  Telomere_reg-2   Telomere length regulation protein
        9.7    6.3   5.7        4.9    7.3   0.6    2.7  3  Con-6            Conidiation protein 6


Domain annotation for each model (and alignments):
>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.8     0.052        71       2      52 ..     149     204 ..     148     206 .. 0.78
   2 ?   -0.7   0.0       1.6   2.2e+03      21      46 ..     257     283 ..     237     287 .. 0.72
   3 ?   -2.6   0.0       6.3   8.6e+03      23      34 ..     322     333 ..     319     342 .. 0.53
   4 !   42.6   0.0   4.4e-14   6.1e-11       1      54 [.     382     436 ..     382     437 .. 0.98
   5 ?    3.4   0.1     0.084   1.2e+02      18      53 ..     447     477 ..     436     479 .. 0.79
   6 ?   -0.2   0.0       1.1   1.5e+03      19      54 ..     488     525 ..     482     526 .. 0.77
   7 ?    4.8   0.0      0.03        41       7      53 ..     620     663 ..     617     665 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.052
     HEAT_EZ   2 rvRraAawaLGr...laggepellqplvpeilpaLlalLnddsd..eVRaaAagaL 52 
                 +v+ra +++LG     a   +e+l  +   il a +++ +++++  +VR aA+ aL
  CCD22494.1 149 NVKRASLLTLGYiceSADPQSEALVAASNNILIAIVQGAQSSEQsrLVRLAALNAL 204
                 689999999*9955544445555777888999999999988888889999999999 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
     HEAT_EZ  21 llqplvpeilpaLl.alLnddsdeVRa 46 
                 +++p+ ++++ aL  a++ +++d+V  
  CCD22494.1 257 YMKPYMEQAIYALTiATMASPNDKVAS 283
                 467766666666666999999999865 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 6.3
     HEAT_EZ  23 qplvpeilpaLl 34 
                 ++++p +l +L 
  CCD22494.1 322 KDVIPNLLTLLT 333
                 445555555554 PP

  == domain 4  score: 42.6 bits;  conditional E-value: 4.4e-14
     HEAT_EZ   1 wrvRraAawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 wr+R+aA++a+G+ + g  +e+l+ +v+++lpa l l+nd+s  V+++Aa+++g+
  CCD22494.1 382 WRNREAAVMAFGSiMDGPSKEQLSIYVEQALPAVLTLMNDSSLQVKETAAWCIGR 436
                 9****************************************************97 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.084
     HEAT_EZ  18 epellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                  + ll+++v ++l  L      d+++V +++a+ + 
  CCD22494.1 447 SDTLLPGVVHVALQGLS-----DNAKVATNCAWIII 477
                 56678889999999999.....***********875 PP

  == domain 6  score: -0.2 bits;  conditional E-value: 1.1
     HEAT_EZ  19 pellqplvpeilpaLlalL.nddsd.eVRaaAagaLgn 54 
                 p  +  + p ++  L+++  ++d+  + Ra A  aL+ 
  CCD22494.1 488 PSPIYNFYPILVQGLIKAAgRSDNEhNARASAFAALTT 525
                 5556667778899999777799999899****999976 PP

  == domain 7  score: 4.8 bits;  conditional E-value: 0.03
     HEAT_EZ   7 AawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 A++aL++ +   +   +p++++  p+L++ L  +++++  +A+g ++
  CCD22494.1 620 AVSALATTL---GKNFEPYLEAFSPYLVKVLDQPESPIAVTAVGFIS 663
                 777777644...566778888999*******9999999***999876 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       6.4   8.8e+03       8      29 ..     102     123 ..      97     124 .. 0.70
   2 ?    3.1   0.0      0.11   1.5e+02      12      30 ..     146     164 ..     145     165 .. 0.89
   3 ?    3.3   0.1     0.089   1.2e+02      11      25 ..     190     205 ..     180     206 .. 0.68
   4 !    8.9   0.1    0.0014         2       1      29 [.     224     252 ..     224     254 .. 0.94
   5 ?    4.0   0.0     0.056        77      11      31 .]     341     361 ..     338     361 .. 0.95
   6 !    8.7   0.0    0.0017       2.3       2      29 ..     370     397 ..     369     398 .. 0.90
   7 !   19.1   0.1   7.6e-07    0.0011       2      29 ..     412     439 ..     411     441 .. 0.92
   8 ?   -1.8   0.0         4   5.6e+03      11      29 ..     463     481 ..     458     483 .. 0.82
   9 ?    3.4   0.0     0.084   1.2e+02      10      30 ..     509     529 ..     498     530 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6.4
                 HHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLgalae 29 
                 +l +++ +V  ++a+ ++a+a 
  CCD22494.1 102 ALVSSEDRVANSTAQLIAAIAD 123
                 4556777788888888888875 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
                 SSHHHHHHHHHHHHHHHHC CS
        HEAT  12 pspeVReaAakaLgalaev 30 
                 +s +V +a++++Lg ++e 
  CCD22494.1 146 QSENVKRASLLTLGYICES 164
                 6789*************95 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.089
                 -SSHH.HHHHHHHHHH CS
        HEAT  11 Dpspe.VReaAakaLg 25 
                 ++ ++ VR aA++aL+
  CCD22494.1 190 SEQSRlVRLAALNALA 205
                 444444********97 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0014
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l+ +++++ + ++ e+ +aA+ +L+++++
  CCD22494.1 224 LMQVVCEATQANDTEIQAAAFGCLCKIMS 252
                 7999***********************97 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.056
                 -SSHHHHHHHHHHHHHHHHCS CS
        HEAT  11 DpspeVReaAakaLgalaevl 31 
                 D++++V ++A  +L  +a+++
  CCD22494.1 341 DDDWNVSMSAGACLQLFAQNC 361
                 9*****************997 PP

  == domain 6  score: 8.7 bits;  conditional E-value: 0.0017
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 l ++ k+++ ++++ ReaA+ a+g ++ 
  CCD22494.1 370 LSFVEKNITNDNWRNREAAVMAFGSIMD 397
                 7889999*9999999**********986 PP

  == domain 7  score: 19.1 bits;  conditional E-value: 7.6e-07
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 lP++l+l++D+s +V e+Aa+++g+ a+
  CCD22494.1 412 LPAVLTLMNDSSLQVKETAAWCIGRAAS 439
                 8***********************9775 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 4
                 -SSHHHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgalae 29 
                 +++++V  ++a+ +  l+e
  CCD22494.1 463 SDNAKVATNCAWIIISLVE 481
                 5788999999999998887 PP

  == domain 9  score: 3.4 bits;  conditional E-value: 0.084
                 T-SSHHHHHHHHHHHHHHHHC CS
        HEAT  10 sDpspeVReaAakaLgalaev 30 
                 sD++ + R++A+ aL++l+e+
  CCD22494.1 509 SDNEHNARASAFAALTTLVEY 529
                 6888889***********996 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   1.9   1.3e-14   1.8e-11       2      74 .]      26     105 ..      25     105 .. 0.95
   2 ?    0.2   0.1      0.54   7.4e+02      18      46 ..     134     165 ..     121     206 .. 0.52
   3 ?   -1.2   0.0       1.5     2e+03      19      46 ..     503     530 ..     494     543 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.3e-14
                 HHHHHHHHC..STCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC.......GSXHHHHHHHHHHHHHHHHH CS
       IBN_N   2 ekqLkqlek..qpgflsallqilanseselevRqlAalyLknlitkhWsdeeekq.......slpseekeqIrnnllnllgs 74 
                 e+qLk+l++  + +f+ +l+++l   + +le+R lAal+Lkn + ++  d+ ++q       sl++e k+qI+ n+l++l+s
  CCD22494.1  26 ETQLKKLSNenFLQFAGLLSEVLIEPTAKLEARILAALTLKNELVSK--DSMKNQqyaqrwvSLDPEAKNQIKLNALTALVS 105
                 99******999************************************..8888888**********************9985 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.54
                 HHHHHHC....TTSHHHHHHHHHHHHHHHHHHH CS
       IBN_N  18 llqilan....seselevRqlAalyLknlitkh 46 
                 l+ i+++    s+se +v+ +++l+L   +++ 
  CCD22494.1 134 LMKIVVDntepSQSE-NVKRASLLTLGYICESA 165
                 555555544323333.77777777765444444 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.5
                 HHHHHCTTSHHHHHHHHHHHHHHHHHHH CS
       IBN_N  19 lqilanseselevRqlAalyLknlitkh 46 
                 +  + +s++e+++R +A   L+ l+++ 
  CCD22494.1 503 IKAAGRSDNEHNARASAFAALTTLVEYA 530
                 55566789999***88888888888776 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.8   2.6e+03      72     122 ..     199     251 ..     135     260 .. 0.60
   2 !    7.6   0.0    0.0018       2.5       5      44 ..     366     405 ..     363     422 .. 0.84
   3 ?    1.3   0.0      0.16   2.2e+02      85     154 ..     401     475 ..     398     479 .. 0.79
   4 !    6.1   0.0    0.0053       7.3      74     137 ..     477     543 ..     467     554 .. 0.81
   5 ?   -2.7   0.1       2.6   3.5e+03      70     104 ..     572     606 ..     566     609 .. 0.78
   6 ?    3.5   0.0     0.033        45      77     114 ..     621     658 ..     616     670 .. 0.81
   7 ?    0.2   0.0      0.33   4.6e+02      71     105 ..     656     690 ..     651     696 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
     CLASP_N  72 tgchllkelaiqlkeqldpm..veillptLlkllgdtKkiisqnanqalaall 122
                 +++  l + +   k+++d     ++l+++  +  +++   i ++a+ +l+ ++
  CCD22494.1 199 AALNALADSLVFIKNNMDREgeRNYLMQVVCEATQANDTEIQAAAFGCLCKIM 251
                 34444555555555555555223457777777777777778888888887776 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0018
     CLASP_N   5 aeellaafegketelnwdaReknilklrslikgnvpedav 44 
                 +e +l++ e   t+ nw++Re++++ + s++ g  +e+ +
  CCD22494.1 366 LEPVLSFVEKNITNDNWRNREAAVMAFGSIMDGPSKEQLS 405
                 667888898889*******************998877765 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.16
     CLASP_N  85 keqldpmveillptLlkllgdtKkiisqnanqal...aallsnasfspri.lqvlsvalqdKnvqpRe.ysaiwL 154
                 keql  +ve+ lp  l+l+ d    + ++a+ ++   a+l+++a  s  +   v+ valq+ + +++  + + w+
  CCD22494.1 401 KEQLSIYVEQALPAVLTLMNDSSLQVKETAAWCIgraASLVADAVASDTLlPGVVHVALQGLSDNAKVaTNCAWI 475
                 67888999999*********9999999999999855567788777777777889999999888888852446665 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0053
     CLASP_N  74 chllkelaiqlkeqldpmveillptLlkllg..dtKkiisqnanqalaallsnas.fsprilqvlsv 137
                 ++l++ela  + + + ++  il++ L+k  g  d+ + ++++a++al++l++ a+   ++ l  +s+
  CCD22494.1 477 ISLVEELALAEPSPIYNFYPILVQGLIKAAGrsDNEHNARASAFAALTTLVEYANdNVSETLASIST 543
                 6799*************************963378999*************9998333333555555 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 2.6
     CLASP_N  70 sstgchllkelaiqlkeqldpmveillptLlkllg 104
                  s+ + +l   ++ +  ++ +++++l++++++ll 
  CCD22494.1 572 QSNILTVLAAAIRKNTGNVGSVADMLMSLFMRLLD 606
                 56667777777777777899999999999999875 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.033
     CLASP_N  77 lkelaiqlkeqldpmveillptLlkllgdtKkiisqna 114
                 ++ la +l+++++p++e++ p L+k+l +    i+ +a
  CCD22494.1 621 VSALATTLGKNFEPYLEAFSPYLVKVLDQPESPIAVTA 658
                 67899********************9987766666555 PP

  == domain 7  score: 0.2 bits;  conditional E-value: 0.33
     CLASP_N  71 stgchllkelaiqlkeqldpmveillptLlkllgd 105
                  t++ ++++++  l+++++++++ ++++L +l++ 
  CCD22494.1 656 VTAVGFISDISNSLEDDFKKYAQVFMSVLGNLVSR 690
                 68899************************999875 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.75     1e+03      33      60 ..      97     126 ..      43     159 .. 0.62
   2 !    7.5   0.4    0.0039       5.4      11      57 ..     145     206 ..     131     248 .. 0.66
   3 !   15.1   0.0   1.7e-05     0.023      11      87 ..     341     434 ..     325     435 .. 0.70
   4 !   12.8   0.0   8.6e-05      0.12      10      58 ..     378     437 ..     370     453 .. 0.60
   5 ?   -0.2   0.0      0.95   1.3e+03       9      39 ..     508     526 ..     496     544 .. 0.41
   6 ?   -0.5   0.0       1.2   1.7e+03      41      77 ..     614     653 ..     569     659 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.75
      HEAT_2  33 lpaLvellededpavRraa..aeaLgaigd 60 
                 l+aL+ l+++ed+    +a  + a++ i +
  CCD22494.1  97 LNALTALVSSEDRVANSTAqlIAAIADIEL 126
                 566666666666433333311344444444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0039
      HEAT_2  11 dpdpevrraairaLg...rignp..........ealpaLvell.ed.edpavRraaaeaLga 57 
                 + +++v+ra + +Lg   + ++p           +l a+v+ + ++ +++ vR aa +aL+ 
  CCD22494.1 145 SQSENVKRASLLTLGyicESADPqsealvaasnNILIAIVQGAqSSeQSRLVRLAALNALAD 206
                 678899999999999555334446666665554557788887754424589******99983 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.7e-05
      HEAT_2  11 dpdpevrraairaLg....rignp...ealpaLvellededpavRraaaeaLgai..g.........dpealpaLkellddddddvvReaAaeaL 87 
                 d d++v   a  +L     ++gn     +l  + + +++++++ R+aa++a g i  g          ++alpa + l++ d++  v+e Aa+ +
  CCD22494.1 341 DDDWNVSMSAGACLQlfaqNCGNHilePVLSFVEKNITNDNWRNREAAVMAFGSImdGpskeqlsiyVEQALPAVLTLMN-DSSLQVKETAAWCI 434
                 777778888878887555534442333567778888899**************88551333333333588*******995.788999*9999866 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 8.6e-05
      HEAT_2  10 ndpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgai 58 
                 +  ++  r aa++a g+i +            +alpa++ l++d++  v ++aa+ +g+ 
  CCD22494.1 378 TNDNWRNREAAVMAFGSIMDGpskeqlsiyveQALPAVLTLMNDSSLQVKETAAWCIGRA 437
                 455666777777777743221133444444447777777777777777777777777655 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.95
      HEAT_2   9 endpdpevrraairaLgrignpealpaLvel 39 
                 ++d +++ r+ a  aL              l
  CCD22494.1 508 RSDNEHNARASAFAALT------------TL 526
                 22333333333333333............22 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 1.2
      HEAT_2  41 ededpavRraaaeaLgai...gdpealpaLkelldddddd 77 
                 ed+      a a++Lg+     ++++ p L + ld+++++
  CCD22494.1 614 EDDVFFAVSALATTLGKNfepYLEAFSPYLVKVLDQPESP 653
                 5555556667777888542224688888888888877665 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       7.7   1.1e+04      27      36 ..      94     103 ..      91     104 .. 0.73
   2 ?    5.0   0.0      0.02        28      23      40 ..     145     162 ..     134     163 .. 0.88
   3 ?    0.1   0.1      0.67   9.3e+02      22      39 ..     233     250 ..     225     252 .. 0.81
   4 !   14.8   0.1   1.6e-05     0.021      12      37 ..     410     435 ..     403     439 .. 0.89
   5 ?   -0.2   0.1      0.86   1.2e+03      21      34 ..     459     474 ..     455     476 .. 0.85
   6 ?   -3.5   0.0       9.3   1.3e+04      16      28 ..     600     612 ..     597     614 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7.7
                 HHHHHHHHHH CS
         Arm  27 evqeeAawAL 36 
                 +++ +A++AL
  CCD22494.1  94 QIKLNALTAL 103
                 5778888887 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.02
                 TSSHHHHHHHHHHHHHHT CS
         Arm  23 sedeevqeeAawALsNLa 40 
                 s++e+v+++++ +L++++
  CCD22494.1 145 SQSENVKRASLLTLGYIC 162
                 99***************9 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.67
                 TTSSHHHHHHHHHHHHHH CS
         Arm  22 ssedeevqeeAawALsNL 39 
                 +  d+e+q +A ++L+ +
  CCD22494.1 233 QANDTEIQAAAFGCLCKI 250
                 5689**********9866 PP

  == domain 4  score: 14.8 bits;  conditional E-value: 1.6e-05
                 THHHHHHHHTTTSSHHHHHHHHHHHH CS
         Arm  12 GavppLvrLLssedeevqeeAawALs 37 
                  a+p+ ++L+++ + +v+e Aaw+++
  CCD22494.1 410 QALPAVLTLMNDSSLQVKETAAWCIG 435
                 59**********************98 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.86
                 TT..TSSHHHHHHHHH CS
         Arm  21 Ls..sedeevqeeAaw 34 
                 L+  s++ +v +++aw
  CCD22494.1 459 LQglSDNAKVATNCAW 474
                 556699********** PP

  == domain 6  score: -3.5 bits;  conditional E-value: 9.3
                 HHHHHTTTSSHHH CS
         Arm  16 pLvrLLssedeev 28 
                  ++rLL+ +d  +
  CCD22494.1 600 LFMRLLDKKDSAY 612
                 789***9888755 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.7      0.98   1.4e+03      34     133 ..      18     113 ..       4     124 .. 0.45
   2 ?    1.8   0.1      0.16   2.2e+02      21     106 ..     223     330 ..     195     381 .. 0.59
   3 !   13.4   0.0   4.3e-05     0.059      18     134 ..     407     537 ..     403     566 .. 0.78
   4 ?    1.2   0.0      0.25   3.4e+02      69     140 ..     510     596 ..     505     613 .. 0.66
   5 ?    2.8   0.0     0.078   1.1e+02      38     106 ..     655     707 ..     619     755 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.98
        Cnd1  34 dpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkdkq 132
                 d+ VR +    + kL ++++ +  g+ls   + l ++ ++  a  laalt  +e  ++  +++ ++++++ ++   e++++   + l++L+s  ++ ++
  CCD22494.1  18 DQNVRIQSETQLKKLSNENFLQFAGLLS---EVLIEPTAKLEARILAALTLKNELVSKDSMKN-QQYAQRWVSLDPEAKNQIKLNALTALVSSEDRVAN 112
                 5555555555555555555555555433...33445555555555555544444422222222.33444444333444444444444444444444444 PP

        Cnd1 133 e 133
                  
  CCD22494.1 113 S 113
                 3 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.16
        Cnd1  21 ylvepLrkrLkDedpyVRktaaivvakL.....ilndmvkekgflselaklleDenprVvanalaalteisekse.................naiynll 97 
                 yl++ ++++ + +d  ++  a+ +++k+     + ++   e+ + +     +  +n++V ++++ + + i e++                  n ++n+l
  CCD22494.1 223 YLMQVVCEATQANDTEIQAAAFGCLCKImslyyMYMKPYMEQAIYALTIATMASPNDKVASMTVEFWSTICEEEIdiayemsqfpqsgqqsyNFALNSL 321
                 666667777777777788888888888766533333333444444444444577888888888888888888855234444444444444445555555 PP

        Cnd1  98 pdiisklsd 106
                 +d+i +l++
  CCD22494.1 322 KDVIPNLLT 330
                 555555555 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 4.3e-05
        Cnd1  18 lveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselak.ll..eDenprVvanalaalteisek....senaiynllpdiisklsd. 106
                  ve+ ++ + + ++D++ +V++taa ++ +   + +d v +  +l  + + +l    +n++V +n+  ++  + e+    ++++iyn  p +++ l + 
  CCD22494.1 407 YVEQALPAVLTLMNDSSLQVKETAAWCIGRAasLVADAVASDTLLPGVVHvALqgLSDNAKVATNCAWIIISLVEElalaEPSPIYNFYPILVQGLIKa 505
                 58899999999******************9999999999999966555441555557899*****98777666666555699**********9999997 PP

        Cnd1 107 ....alnecsewgqitilefLlsyipkdkqea 134
                     + ++  +++    l++L++y +++ +e+
  CCD22494.1 506 agrsDNEHNARASAFAALTTLVEYANDNVSET 537
                 77643344777777888899999988887754 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.25
        Cnd1  69 DenprVvanalaalteiseksenaiynllpdiisklsdalne...............csewgqitilefLlsyipkdkqeaeslvek 140
                 D++++ +a+a aalt + e +++++ + l +i   + d+l +                 ++ q +il++L+  i k++ +  s+++ 
  CCD22494.1 510 DNEHNARASAFAALTTLVEYANDNVSETLASISTFVMDKLGQtmqvddtqlniedlqSLQELQSNILTVLAAAIRKNTGNVGSVADM 596
                 777788888888888888887666666666555555553333344444444445555666778888888888888887765555554 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.078
        Cnd1  38 RktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsd 106
                   t                 gf+s++ + leD+ ++  +   ++l ++ ++s +a  +l+p+iis + d
  CCD22494.1 655 AVT---------------AVGFISDISNSLEDDFKKYAQVFMSVLGNLVSRS-DARKELKPTIISVFGD 707
                 333...............3455555555555555555555555555555555.4555555555554443 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.83   1.2e+03      23     135 ..      82     204 ..      57     213 .. 0.57
   2 ?   -3.0   0.0       4.5   6.2e+03      64     106 ..     223     264 ..     221     289 .. 0.52
   3 ?    8.6   0.0    0.0012       1.6      66     136 ..     640     709 ..     515     713 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.83
      Sec7_N  23 pkfl.slaersktfsLeLlesvlsnhgdvfrkhpellqllkqklcp.....lLlknlsespsfpvferslrivllLlkkfrseLktEievflsllilil 115
                 ++++    e + ++ L  l +++s+ ++v ++  +l++++ +  +p      L+k++ ++++++ +e + r  ll l +  ++   ++e+++   + il
  CCD22494.1  82 QRWVsLDPEAKNQIKLNALTALVSSEDRVANSTAQLIAAIADIELPrgewnDLMKIVVDNTEPSQSENVKRASLLTLGYICESADPQSEALVAASNNIL 180
                 666644455566667777777777777777766666666654332211111356666566666666666666666666666666666666555555444 PP

      Sec7_N 116 les....dsslwqrvlaLeilrrl 135
                 +      +ss + r + L +l+ l
  CCD22494.1 181 IAIvqgaQSSEQSRLVRLAALNAL 204
                 433333455556666666666655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.5
      Sec7_N  64 klcplLlknlsespsfpvferslrivllLlkkfrseLktEiev 106
                 +l+++++    + +++++   ++ ++  +++ ++  +k  +e 
  CCD22494.1 223 YLMQVVCEAT-QANDTEIQAAAFGCLCKIMSLYYMYMKPYMEQ 264
                 5666666666.44444444444444444444444444433333 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0012
      Sec7_N  66 cplLlknlsespsfpvferslrivllLlkkfrseLktEievflsllilillesdsslwqrvlaLeilrrlc 136
                  p L+k+l ++p+ p+ + ++  ++ + +++ + +k+  +vf+s+l   + +sd+  + + +++ ++ ++ 
  CCD22494.1 640 SPYLVKVL-DQPESPIAVTAVGFISDISNSLEDDFKKYAQVFMSVLGNLVSRSDARKELKPTIISVFGDIA 709
                 68899999.*************************************9999888999999998888887776 PP

>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.7    0.0042       5.8      98     162 ..     547     608 ..     517     611 .. 0.73
   2 ?    3.1   0.0     0.031        42      70     146 ..     657     729 ..     652     731 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0042
  AI-2E_transport  98 nelpslleelenliqalkqslskilsnilssilnsllsllasllglilslvlvllllffllldge 162
                       +l + +++    + +l+ +  ++l++++s+il+ l  ++++ +g + s++ +l+ lf+ lld++
       CCD22494.1 547 DKLGQTMQV---DDTQLNIEDLQSLQELQSNILTVLAAAIRKNTGNVGSVADMLMSLFMRLLDKK 608
                      233333334...48899999999************************************999986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.031
  AI-2E_transport  70 llvplliaqltqlvkslpayidslqnilnelpslleelenliqalkqslskilsnilssilnsllsllasllglils 146
                      + v ++ +++++l +++++y +   + l +l s+ + +    ++lk ++++++ +i  +i + ++++l+++ gl + 
       CCD22494.1 657 TAVGFISDISNSLEDDFKKYAQVFMSVLGNLVSRSDAR----KELKPTIISVFGDIAANIGSDFITYLNDVMGLCVA 729
                      34446777788888888888888888888888888888....69***************************998875 PP

>> DUF3347  Protein of unknown function (DUF3347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.3   0.00027      0.37      46     140 ..      51     145 ..      11     151 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00027
     DUF3347  46 kdeklkevlesYlklkdALvaddakeakkaakkleeklkavdtsklkekekkelkei.seelkekaekiaeskdieeqReaFkklsedliklvkaf 140
                  ++kl++ + + l lk+ Lv++d+ + ++ a+   +  +   ++++k ++ ++l +   + ++++a+ ia+ +die  R ++++l + +++ ++ +
  CCD22494.1  51 PTAKLEARILAALTLKNELVSKDSMKNQQYAQRWVSL-DPEAKNQIKLNALTALVSSeDRVANSTAQLIAAIADIELPRGEWNDLMKIVVDNTEPS 145
                 45566666666699******************99865.5555888888887776655055667788999999*************99999877654 PP

>> TIP120  TATA-binding protein interacting (TIP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.4         1   1.4e+03      64     130 ..       4      77 ..       1     118 [. 0.60
   2 ?   -2.0   0.0         2   2.7e+03      67     111 ..     225     270 ..     201     287 .. 0.69
   3 ?    3.3   0.0     0.045        62      61      93 ..     449     481 ..     419     489 .. 0.81
   4 ?   11.0   0.4   0.00019      0.26      72     149 ..     506     584 ..     484     603 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1
      TIP120  64 selldrvlaGlsDe.hdikllcnlmlsklvalapeevlerldelvealrktls......kklkekavkqelEkq 130
                 se+++ +++ +    +++++ + + l kl + +  +++  l+e+  + ++ l+       +lk++ v+++  k+
  CCD22494.1   4 SEFAQVLEDSILNRdQNVRIQSETQLKKLSNENFLQFAGLLSEVLIEPTAKLEarilaaLTLKNELVSKDSMKN 77 
                 56666666666554488888888888888888887777776643322222222000012344444444444444 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2
      TIP120  67 ldrvlaGlsDe.hdikllcnlmlsklvalapeevlerldelvealr 111
                 ++ v ++ + + ++i++ ++ +l k+++l    +   +++ + al+
  CCD22494.1 225 MQVVCEATQANdTEIQAAAFGCLCKIMSLYYMYMKPYMEQAIYALT 270
                 4445555544447888888888888888777777766666666655 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.045
      TIP120  61 ldlselldrvlaGlsDehdikllcnlmlsklva 93 
                   l  +++  l+GlsD+  + + c  +++ lv+
  CCD22494.1 449 TLLPGVVHVALQGLSDNAKVATNCAWIIISLVE 481
                 445666777899****************99986 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00019
      TIP120  72 aGlsDe.hdikllcnlmlsklvalapeevlerldelvealrktlskklkekavkqelEkq...eelkrsvlrvvaalnskle 149
                 aG sD+ h+ ++ ++  l+ lv+ a+++v+e l ++++ +   l ++++ + ++ ++E     +el+ ++l v+aa    ++
  CCD22494.1 506 AGRSDNeHNARASAFAALTTLVEYANDNVSETLASISTFVMDKLGQTMQVDDTQLNIEDLqslQELQSNILTVLAAA---IR 584
                 6779999*************************************999999888877776511156666666665543...33 PP

>> Telomere_reg-2  Telomere length regulation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2       1.1   1.5e+03      75      75 ..     106     106 ..      44     207 .. 0.63
   2 ?   -3.1   0.0       7.9   1.1e+04      57      90 ..     257     290 ..     232     294 .. 0.73
   3 ?   -0.6   0.0       1.3   1.8e+03      14      43 ..     510     539 ..     496     559 .. 0.69
   4 ?    7.7   0.0    0.0035       4.8      18      84 ..     570     636 ..     555     640 .. 0.88
   5 ?   -1.7   0.0       2.8   3.8e+03       3      38 ..     661     697 ..     660     731 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.1
  Telomere_reg-2  75 a 75 
                     +
      CCD22494.1 106 S 106
                     2 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7.9
  Telomere_reg-2  57 dienfeelrlnalvallvatpekvaeylteeffs 90 
                     +++ + e+ + al+  ++a+p+  +  +t ef+s
      CCD22494.1 257 YMKPYMEQAIYALTIATMASPNDKVASMTVEFWS 290
                     4556666666777777777887777788888887 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.3
  Telomere_reg-2  14 kddyekieaaLksaeeLirrkadeveenav 43 
                     +++++   +a+ ++++L++ ++d+v+e   
      CCD22494.1 510 DNEHNARASAFAALTTLVEYANDNVSETLA 539
                     344456668999999999988888887443 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0035
  Telomere_reg-2  18 ekieaaLksaeeLirrkadeveenaveLataLltledkfdienfeelrlnalvallvatpekvaeyl 84 
                     e +   L++++  ir+++ +v  +a  L++ +++l dk d   +e++ + a+ al+++  ++  +yl
      CCD22494.1 570 ELQSNILTVLAAAIRKNTGNVGSVADMLMSLFMRLLDKKDSAYIEDDVFFAVSALATTLGKNFEPYL 636
                     5566789999999******************************************999877776665 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 2.8
  Telomere_reg-2   3 YlkdllelLrdk.ddyekieaaLksaeeLirrkad..ev 38 
                     +++d+ + L+d+ +  +  ++ ++++ +L+ r+++  e+
      CCD22494.1 661 FISDISNSLEDDfK--KYAQVFMSVLGNLVSRSDArkEL 697
                     78899999996634..44556888889999888774444 PP

>> Con-6  Conidiation protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.5   6.9e+02      12      22 ..      64      74 ..      57      79 .. 0.84
   2 ?   -3.7   0.1       9.8   1.3e+04      15      20 ..     531     536 ..     530     536 .. 0.89
   3 ?    7.3   0.6    0.0036       4.9      14      27 ..     835     848 ..     831     849 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.5
       Con-6 12 tLsNPnvSeeA 22
                tL+N  vS+ +
  CCD22494.1 64 TLKNELVSKDS 74
                9*******987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 9.8
       Con-6  15 NPnvSe 20 
                 N+nvSe
  CCD22494.1 531 NDNVSE 536
                 9****8 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0036
       Con-6  14 sNPnvSeeAKehAk 27 
                 sNPn S+  K +A+
  CCD22494.1 835 SNPNFSQSTKNNAR 848
                 9************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (862 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 5962.81
//
Query:       CCD22495.1  [L=297]
Description: hypothetical protein NDAI_0A03380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-54  180.8   0.8    2.1e-18   66.0   0.0    3.0  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   1.2e-22   2.1e-18      11      93 ..      13      90 ..       5      94 .. 0.95
   2 !   54.1   0.0   6.4e-19   1.1e-14       9      96 ..     103     193 ..      96     194 .. 0.86
   3 !   58.2   0.0   3.3e-20   5.9e-16       4      92 ..     200     284 ..     197     288 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 1.2e-22
                HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr 11 aGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93
                 Gg++g++atl+t+Pld++K+rlq+++  + +     ++++l +i+k+e ++gly+Gl++++lr+  ++ ++f++y+ +k+ +
  CCD22495.1 13 YGGAGGVFATLMTHPLDLAKVRLQAAPMPKPT-----LRKMLTTILKNENVMGLYSGLSAAILRQCTYTTVRFGAYDLMKENI 90
                69***************************998.....9******************************************976 PP

  == domain 2  score: 54.1 bits;  conditional E-value: 6.4e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHH.HHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqtqkksskksksaa..ildvlkkiykee.GlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                 l +++++gav++l+ +  dvv +r+q+++   ++ ++++  ++d ++kiyk+e G++ l  G+ pn++r +  +a ++v+y+++k++l++k
  CCD22495.1 103 LPCSMISGAVGGLAGNFADVVNIRMQNDSALDNHLRRNYknAIDGVYKIYKNEgGFKTLLTGWKPNMVRGVLMTASQVVTYDVFKNYLTTK 193
                 6689***********************88776554444445**********76268*******************************9875 PP

  == domain 3  score: 58.2 bits;  conditional E-value: 3.3e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                 +   +l a++lag+vat+++ P dv+Ktr+++  ++s++s    ++++l + +++eG   ++rG+lp+++r  p ++l f++ e+lk++
  CCD22495.1 200 KNSTHLSASLLAGLVATTICSPADVIKTRIMNGHGTSNES----AIKILTTAIRKEGPGFMFRGWLPSFTRLGPFTMLIFFAIEQLKKH 284
                 5668999*************************99998875....799***************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2247.82
//
Query:       CCD22496.1  [L=882]
Description: hypothetical protein NDAI_0A03390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.003   17.9  26.3       0.31   11.5   2.1    6.1  6  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
       0.17   12.1  13.7         22    5.4   0.3    6.0  6  LRR_6     Leucine Rich repeat
        7.4    7.6  25.6         40    5.3   0.1    8.2  8  LRR_1     Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.95   5.7e+03      22      32 ..     185     195 ..     158     204 .. 0.64
   2 !   10.2   0.1   0.00013      0.79       9      40 ..     250     281 ..     243     291 .. 0.76
   3 !   11.5   2.1   5.2e-05      0.31       1      33 [.     268     303 ..     268     341 .. 0.85
   4 ?   -2.9   0.1       1.8   1.1e+04      23      31 ..     364     372 ..     354     380 .. 0.73
   5 !   10.8   0.7   9.1e-05      0.54      16      39 ..     400     425 ..     389     431 .. 0.70
   6 !    7.1   2.4    0.0013       7.5      22      38 ..     459     477 ..     447     482 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.95
                 -TT--EEE-.- CS
       LRR_4  22 lpnLkeLdLsg 32 
                  +nL +Ld  g
  CCD22496.1 185 GKNLSVLDFCG 195
                 47777777434 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00013
                 -SS---E-S-HH.....H.-TT--EEE-.-S-----GG CS
       LRR_4   9 snNqltdiplle.....k.lpnLkeLdLsgNnlitdld 40 
                 +    td+p++      k lp L++LdLs+     ++d
  CCD22496.1 250 N--DCTDLPSFVlgrvlKmLPELQKLDLSHT----SID 281
                 4..4899999555578855*********998....765 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 5.2e-05
                 SS--EEE--SS---E-S-HH...H-TT--EEE-.-S CS
       LRR_4   1 pnLevLdLsnNqltdiplle...klpnLkeLdLsgN 33 
                 p L++LdLs++ +    ll+     +nL++L+L ++
  CCD22496.1 268 PELQKLDLSHTSIDGDTLLNgipHYKNLTHLSLASC 303
                 68********99885444776655888******877 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.8
                 TT--EEE-. CS
       LRR_4  23 pnLkeLdLs 31 
                 + L++L++ 
  CCD22496.1 364 KTLQYLNIG 372
                 568888873 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 9.1e-05
                 -S-..HHH-TT--EEE-.-S.-----G CS
       LRR_4  16 ipl..leklpnLkeLdLsgN.nlitdl 39 
                 +++  l+ +pnLk+L++ gN  +i++l
  CCD22496.1 400 LQFikLN-FPNLKSLSIKGNnIPISKL 425
                 6664455.*********6650444544 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0013
                 -TT..--EEE-.-S----- CS
       LRR_4  22 lpn..LkeLdLsgNnlitd 38 
                 l+   Lk L++s+Nn+i++
  CCD22496.1 459 LKEqhLKFLNISNNNQINK 477
                 5555599999999999966 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1         3   1.8e+04       5      13 ..     244     252 ..     241     253 .. 0.75
   2 ?    2.6   0.0      0.03   1.8e+02       5      17 ..     270     282 ..     268     283 .. 0.88
   3 ?    1.7   0.1     0.058   3.4e+02       4      14 ..     294     304 ..     293     313 .. 0.84
   4 ?    2.2   0.0      0.04   2.4e+02       1      12 [.     362     373 ..     362     376 .. 0.88
   5 ?    4.5   0.0    0.0074        44       3      15 ..     408     420 ..     408     420 .. 0.93
   6 ?    5.4   0.3    0.0037        22       3      15 ..     462     475 ..     460     477 .. 0.89

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3
       LRR_6   5 LteLdLsgN 13 
                 +t L L+++
  CCD22496.1 244 ITCLGLNDC 252
                 788999988 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.03
       LRR_6   5 LteLdLsgNdIgD 17 
                 L++LdLs+  I++
  CCD22496.1 270 LQKLDLSHTSIDG 282
                 899*****99987 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.058
       LRR_6   4 hLteLdLsgNd 14 
                 +Lt+L+L+++ 
  CCD22496.1 294 NLTHLSLASCL 304
                 7********96 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.04
       LRR_6   1 snthLteLdLsg 12 
                 +n +L++L++ g
  CCD22496.1 362 HNKTLQYLNIGG 373
                 89*******986 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.0074
       LRR_6   3 thLteLdLsgNdI 15 
                 ++L++L+++gN+I
  CCD22496.1 408 PNLKSLSIKGNNI 420
                 58**********8 PP

  == domain 6  score: 5.4 bits;  conditional E-value: 0.0037
       LRR_6   3 thLteLdLsgNd.I 15 
                 +hL+ L++s N+ I
  CCD22496.1 462 QHLKFLNISNNNqI 475
                 7**********977 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.095   5.7e+02       1      16 [.     187     202 ..     187     212 .. 0.78
   2 ?    1.9   0.1     0.087   5.2e+02       2      13 ..     270     281 ..     269     291 .. 0.79
   3 ?    5.3   0.3    0.0068        41       1      21 [.     294     312 ..     294     315 .. 0.90
   4 ?   -2.6   0.0       2.8   1.7e+04       2      18 ..     330     340 ..     329     346 .. 0.67
   5 ?    0.2   0.0      0.33     2e+03       2      12 ..     366     376 ..     365     386 .. 0.84
   6 ?    3.2   0.1     0.034     2e+02       1      14 [.     409     423 ..     409     435 .. 0.74
   7 ?    5.3   0.1    0.0067        40       1      20 [.     463     480 ..     463     485 .. 0.82
   8 ?   -0.8   2.4      0.69   4.1e+03       6      20 ..     789     803 ..     789     805 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.095
       LRR_1   1 nLrhLdLsnnpllglp 16 
                 nL +Ld +++++++++
  CCD22496.1 187 NLSVLDFCGCSGPSFT 202
                 899********85554 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.087
       LRR_1   2 LrhLdLsnnpll 13 
                 L++LdLs+ +++
  CCD22496.1 270 LQKLDLSHTSID 281
                 99******9983 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0068
       LRR_1   1 nLrhLdLsnnpllglppnsfq 21 
                 nL+hL L ++   +l+p+s+ 
  CCD22496.1 294 NLTHLSLASCL--QLTPRSIL 312
                 8**********..9****986 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 2.8
       LRR_1   2 LrhLdLsnnpllglppn 18 
                 L+ L+L      +  +n
  CCD22496.1 330 LEWLNL------HGVSN 340
                 899999......44444 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.33
       LRR_1   2 LrhLdLsnnpl 12 
                 L++L++++ pl
  CCD22496.1 366 LQYLNIGGLPL 376
                 9*****98777 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.034
       LRR_1   1 nLrhLdLsnnpl.lg 14 
                 nL++L + +n++ ++
  CCD22496.1 409 NLKSLSIKGNNIpIS 423
                 8******77776344 PP

  == domain 7  score: 5.3 bits;  conditional E-value: 0.0067
       LRR_1   1 nLrhLdLsnnpllglppnsf 20 
                 +L+ L++snn+  ++ ++++
  CCD22496.1 463 HLKFLNISNNN--QINKWTI 480
                 69********9..6666665 PP

  == domain 8  score: -0.8 bits;  conditional E-value: 0.69
       LRR_1   6 dLsnnpllglppnsf 20 
                 +++nn+++++ +n +
  CCD22496.1 789 NINNNNNTQIVNNFL 803
                 89*****99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5962.91
//
Query:       CCD22497.1  [L=673]
Description: hypothetical protein NDAI_0A03400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.057   13.2   1.7        0.1   12.3   0.2    2.2  2  MMADHC    Methylmalonic aciduria and homocystinuria type D pr


Domain annotation for each model (and alignments):
>> MMADHC  Methylmalonic aciduria and homocystinuria type D protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   5.6e-06       0.1      13     141 ..     151     276 ..     134     283 .. 0.79
   2 ?   -2.0   0.1      0.14   2.5e+03      32      68 ..     333     367 ..     317     414 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.6e-06
      MMADHC  13 ssgsdepaiais.panlskrtvwpdeamgpfgpqdqrfqLpgnvgfdchlegaaeqkkalvhktvpdvlsapssserhelilaellselqnkekepakq 110
                 s  sd+++ +i+ ++++++   +p  ++g +g  +  f +  + +  +++ ++a +++ +++++ p+ ls++s  ++ e +la + +++++++k++ ++
  CCD22497.1 151 SMLSDTNQDKIPnNQRIGGDLQSP-LRQGSIGTVSTAFLIDPENS--HNIPSTAGTHRRPSSRITPSRLSSASFHSQPEQNLAPSPTNVSSFNKNSDND 246
                 444555554443034445554455.56677799999999988877..78999****************************************9976666 PP

      MMADHC 111 kvskaeeyfeeakvecaiqecPellrkdlee 141
                 ++    +y+   +ve  i+e+ +llr +++ 
  CCD22497.1 247 HSY-STNYQFDDTVEPHIEEAVQLLRSEMKA 276
                 555.788999999***************985 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.14
      MMADHC  32 tvwpdeamgpfgpqdqrfqLpgnvgfdchlegaaeqk 68 
                 ++ +d++   f p  +++++p++v++ +  e +a+++
  CCD22497.1 333 NILEDDQEDEFVP--HQYKIPTKVSLRSLNEKTADNH 367
                 5667888888888..6788999998774333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1097  (0.0611858); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4909.47
//
Query:       CCD22498.1  [L=980]
Description: hypothetical protein NDAI_0A03410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-22   78.4   1.7    1.2e-21   77.0   1.7    1.7  1  Fungal_trans  Fungal specific transcription factor domain
    3.8e-09   36.5  13.9      7e-09   35.7  13.9    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
        2.4    8.6   9.2        6.1    7.3   9.2    1.7  1  DUF2039       Uncharacterized conserved protein (DUF2039)


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   1.7     2e-25   1.2e-21     106     240 ..     443     581 ..     373     621 .. 0.74

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 2e-25
  Fungal_trans 106 tssdralher....hhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwesdda 198
                    ++++    +    ++g a+  a ++gL r+++yvg      l+e++ae+rr+lww+ ++ +k +++ +G  + +dd+ +n++LP++++++++ +++
    CCD22498.1 443 ILQRW----YyvkhLLGNAIPTAIEIGLPRWEYYVG------LDENTAERRRNLWWKLYCQEKSFSFRFGTISSIDDNYMNCLLPNEFRKIGILYNK 529
                   23333....24566**********************......*******************************99********************** PP

  Fungal_trans 199 seetlvetk....lsneeksrkiasfllaLkkilsk......iagsllsiek 240
                   +++ + ++     +++++ s+++ +++ aL +++s       ++++  si +
    CCD22498.1 530 DFVANFSNIpveaFDKMTVSSLKLYGECALLQFISVfqrkniLSDEYTSILN 581
                   ******9769**********************99986666663333333333 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7  13.9   1.2e-12     7e-09       1      38 [.      16      52 ..      16      54 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1.2e-12
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysessk 38
                +aC+nCr +K+KC++++P CsnC+ +n++C f + ++k
  CCD22498.1 16 RACENCRARKIKCSGNQP-CSNCEIYNCPCAFTPIKRK 52
                69****************.************8877776 PP

>> DUF2039  Uncharacterized conserved protein (DUF2039)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   9.2     0.001       6.1      43      84 ..       4      45 ..       2      47 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.001
     DUF2039 43 vkykkYkaltkkkkCvkCeektvkkaYhkiCkkCakekkvCa 84
                + y+k k++++++ C++C+ +++k + ++ C++C   +  Ca
  CCD22498.1  4 ITYGKVKKTRSSRACENCRARKIKCSGNQPCSNCEIYNCPCA 45
                68********************************98777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (980 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 6638.33
//
Query:       CCD22499.1  [L=1108]
Description: hypothetical protein NDAI_0A03420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-33  115.5   3.8      5e-33  114.3   3.8    1.7  1  Fungal_trans  Fungal specific transcription factor domain
    8.5e-09   35.4  12.5    1.7e-08   34.4  12.5    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   3.8   5.6e-37     5e-33       2     249 ..     359     697 ..     358     715 .. 0.86

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 5.6e-37
  Fungal_trans   2 drffsnfhpqf.....pilhk.psflpkt...............ssenssksayaspllllailalGalfsesetkesnssltses........... 66 
                    rff+++  q+      i +  ++fl+k                +s++ +k+a++++l++++i+ l+++f+e+ t++s+++l   +           
    CCD22499.1 359 LRFFDVVCIQLnddyvSIANPlEDFLEKAdnpmgsptgtvssstFSATGPKNASNKELVAILINKLPQPFTENLTSISSQQLIITAndddikmfglv 455
                   5677776655556444333335556666566666666666667799*************************************999*********** PP

  Fungal_trans  67 ...........................................qefiafplraeilihedfsspssslwilqsLlllelyektssdralherhhgva 120
                                                                +i++ +  ++l+  ++ + +s l++l  Ll +     ++++ ++ e++++va
    CCD22499.1 456 vsiynthrlafddfmlnmtsdsnledkskyvedythliemdniLLPICYAYYNATLY--HLDDYNS-LEYLDVLLSFLEHQAWLDEYYGLEKFLNVA 549
                   ***********9999999999999999999999988888888888888888888888..8888888.****************************** PP

  Fungal_trans 121 vrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwesddaseetlvetk.....lsnee 212
                   v++a ++gL r+++yvg       +e +ae+rrRlww  + l+k+++lk+G  +l+dd+++n++L+++++d++++d++++  +v+       ++n++
    CCD22499.1 550 VNCANKMGLFRWEYYVG------FDEVTAERRRRLWWRLYNLEKFYSLKTGELSLIDDEKMNCLLFKEFRDVGFTDHKDFLSRVNSIprnsiFDNMT 640
                   *****************......*************************************************************955********** PP

  Fungal_trans 213 ksrkiasfllaLkkilskiagsllsiekqlqqrdlq....................s 249
                   + ++++++++a  +++s+++ ++l+ e  +++r+++                     
    CCD22499.1 641 IASLKSYGESACLQVTSNFFAKVLYSERYTNIRNNAkplflrnillnevmdaldavA 697
                   ******************999999999999999999888444444444444444444 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4  12.5   1.9e-12   1.7e-08       1      35 [.      15      47 ..      15      50 .. 0.91

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 1.9e-12
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCT CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfyse 35
                +aC nCr++K+KC + +P CsnC+ +++eC+ ++e
  CCD22499.1 15 KACLNCRRRKIKCTGTFP-CSNCAAYQCECV-FDE 47
                59****************.************.665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 7906.38
//
Query:       CCD22500.1  [L=523]
Description: hypothetical protein NDAI_0A03430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-57  193.4   6.3    4.5e-57  192.9   6.3    1.2  1  6PF2K       6-phosphofructo-2-kinase
      7e-17   61.8   0.0    1.1e-16   61.1   0.0    1.3  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.039   13.7   0.0    1.5  1  AAA_24      AAA domain


Domain annotation for each model (and alignments):
>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.9   6.3   7.5e-61   4.5e-57       3     222 ..      88     316 ..      86     317 .. 0.94

  Alignments for each domain:
  == domain 1  score: 192.9 bits;  conditional E-value: 7.5e-61
                 XXHHHHT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS..........---GGGGSTT-HHHHHHHHHHHHHHHHHHHHH CS
       6PF2K   3 estvtnlknsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreaska..........lsdaeffrpdneealklreklalaalkdllay 91 
                 +++++ +++ k++i+lvGLpa++Kt++s+++try++wlgvrt++F+++ky+r               + d+++ +p+ +e+ k+++ +  ++++d++++
  CCD22500.1  88 TDSGKLFHAGKILIILVGLPATSKTLLSVAITRYTRWLGVRTQSFHISKYKRMNDDDgddkndnhriPLDFQSASPKTPEGKKFKRDAINNVMNDMTKF 186
                 56788899********************************************99888889999999999****************************** PP

                 HHTS--SEEEEES---SHHHHHHHHHHH.HHTT-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----TTTTTTSEE CS
       6PF2K  92 lneeegqvaifDAtNttrerRklilefv.eennlkvlflesicsdeeiikeNikevklsspDYkdketeeaikdflkRlenyekqyeplddeedeelsy 189
                 ++e +gq+ai+DA+N+ + +Rk + + + +++++kv+f+esi +d ++ik+Ni+ + ++   Y++ +++ a  d++kRle +e  ye ++  +de++sy
  CCD22500.1 187 FTETQGQLAIYDALNILKSDRKELNDHFsSKIGVKVVFIESIMNDIHLIKRNIEIAIQD-TEYNQIDKDVAEIDYKKRLEINEPLYETMS--SDEKVSY 282
                 ***********************9976616778********************999888.9*****************************..******* PP

                 EEEETTTTEE.EEE---SHHHHHHHHHHTT---S CS
       6PF2K 190 Ikvidvgksl.vvnnvqgylqsrivyyllNihlk 222
                 +k+i+ g+++ v+nn  gyl ++iv++++N++ k
  CCD22500.1 283 VKYINFGQQIhVINNEYGYLINKIVFFMMNLRDK 316
                 *****665552789999*************9876 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   1.9e-20   1.1e-16      47     181 ..     378     509 ..     339     519 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 1.9e-20
                 EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEE CS
  His_Phos_1  47 aiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvV 145
                 ++++ p kR+ +  + ++e  g+pv+++ +L+ +  G++  l+ +ei++ yp e+++ l+dp+++r+p+ Es++d+a R+++ l el++++++  vl++
  CCD22500.1 378 VVWTAPRKRTFDSGKFFLE-KGIPVRKRNQLKQMIPGVVADLSNEEIEKLYPMEYKESLKDPYHYRFPRAESYHDLAVRMESLLLELEHTNKN--VLII 473
                 469***************8.7******************************************************************988875..**** PP

                 E-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE CS
  His_Phos_1 146 sHggvirallarllglpleelrrleldnaslsvlef 181
                 +H  +ir+l+ +l+ ++  el+ l+++   + +++f
  CCD22500.1 474 AHESTIRILYGYLMACSCVELPTLQFTRDNIIEVSF 509
                 ****************99999999886666666655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.5e-06     0.039      96     134 ..     441     479 ..     413     484 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.5e-06
      AAA_24  96 edkgdgkGygelaeefrrllkklqelrknvifiahektr 134
                   ++++  y +la ++ +ll  l++++knv +iahe t 
  CCD22500.1 441 YRFPRAESYHDLAVRMESLLLELEHTNKNVLIIAHESTI 479
                 45889999****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.37
# Mc/sec: 4204.20
//
Query:       CCD22501.1  [L=608]
Description: hypothetical protein NDAI_0A03440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-34  117.8   0.1    9.3e-17   61.8   0.0    2.8  2  ABC_tran      ABC transporter
      6e-15   54.8   4.4    1.5e-14   53.5   4.4    1.7  1  RLI           Possible Fer4-like domain in RNase L inhibitor,
    1.5e-10   41.4   7.4      0.024   14.4   0.1    4.2  4  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.1e-07   32.5   0.0    0.00036   21.0   0.0    2.4  2  AAA_16        AAA ATPase domain
    2.8e-07   30.1   3.8    2.8e-07   30.1   3.8    2.3  2  Fer4          4Fe-4S binding domain
    5.1e-07   29.3   2.3       0.16   11.4   0.0    3.7  3  SMC_N         RecF/RecN/SMC N terminal domain
    2.2e-06   28.0   0.0    0.00054   20.2   0.0    2.4  2  AAA_22        AAA domain
    7.4e-06   26.0   0.0      0.042   13.8   0.0    2.4  2  RsgA_GTPase   RsgA GTPase
    8.7e-06   25.7   2.1       0.17   11.6   0.2    3.1  3  AAA_15        AAA ATPase domain
    1.2e-05   25.7   0.0       0.04   14.3   0.0    2.6  2  AAA           ATPase family associated with various cellular 
    6.7e-05   22.5   0.8       0.18   11.6   0.1    2.5  2  AAA_29        P-loop containing region of AAA domain
    0.00024   21.1   0.1       0.39   10.6   0.1    2.7  3  Rad17         Rad17 P-loop domain
    0.00078   19.4   3.1    0.00078   19.4   3.1    2.5  2  Fer4_6        4Fe-4S binding domain
      0.001   19.6   0.4      0.001   19.6   0.4    2.4  2  Fer4_7        4Fe-4S dicluster domain
     0.0013   19.3   4.7      0.015   15.8   0.0    2.7  2  AAA_23        AAA domain
     0.0016   18.2   0.4       0.18   11.5   0.0    2.6  3  AAA_30        AAA domain
     0.0022   17.8   1.5       0.47   10.2   0.0    2.4  2  AAA_24        AAA domain
     0.0023   17.2   0.0        1.1    8.3   0.0    2.3  2  NB-ARC        NB-ARC domain
     0.0025   17.9  12.6     0.0057   16.8  12.6    1.6  1  Fer4_21       4Fe-4S dicluster domain
     0.0028   18.0   0.0        1.1    9.7   0.0    2.9  2  RNA_helicase  RNA helicase
     0.0038   17.1   0.9       0.43   10.5   0.0    2.4  2  NACHT         NACHT domain
     0.0049   17.1   0.8          1    9.6   0.0    2.4  2  AAA_28        AAA domain
     0.0056   16.7   0.8     0.0056   16.7   0.8    2.3  1  Fer4_2        4Fe-4S binding domain
     0.0059   16.8  11.4      0.012   15.8  11.4    1.5  1  Fer4_9        4Fe-4S dicluster domain
     0.0078   16.2   1.1      0.072   13.1   0.0    2.5  2  AAA_5         AAA domain (dynein-related subfamily)
     0.0083   15.7   0.2      0.093   12.2   0.0    2.2  2  AAA_7         P-loop containing dynein motor region
     0.0087   16.2   1.6     0.0087   16.2   1.6    2.4  2  Fer4_10       4Fe-4S dicluster domain
     0.0088   16.6   0.1        8.8    6.9   0.0    2.7  2  AAA_18        AAA domain
     0.0093   16.0   0.0          5    7.2   0.0    3.0  2  AAA_14        AAA domain
  ------ inclusion threshold ------
      0.012   15.3   0.0        2.6    7.7   0.0    2.4  2  VirE          Virulence-associated protein E
      0.014   15.5   0.5        2.3    8.3   0.0    2.6  2  MMR_HSR1      50S ribosome-binding GTPase
      0.017   15.3   0.0        3.4    7.8   0.0    2.4  2  AAA_33        AAA domain
       0.02   14.9   0.1       0.24   11.4   0.0    2.3  2  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
      0.021   15.7   0.4      0.021   15.7   0.4    2.7  1  Fer4_16       4Fe-4S double cluster binding domain
      0.022   14.6   0.0       0.35   10.7   0.0    2.3  2  dNK           Deoxynucleoside kinase
      0.031   13.9   3.4        1.1    8.9   0.1    2.3  2  SRP54         SRP54-type protein, GTPase domain
      0.063   13.8   0.1      0.063   13.8   0.1    2.4  2  Fer4_17       4Fe-4S dicluster domain
       0.17   11.0   0.1        5.8    6.0   0.0    2.2  2  DUF815        Protein of unknown function (DUF815)
       0.17   12.4   0.1       0.17   12.4   0.1    2.4  2  Fer4_8        4Fe-4S dicluster domain
       0.17   10.5   0.1       0.59    8.7   0.0    1.9  2  AAA_13        AAA domain
        0.2   11.2   0.5          2    7.9   0.0    2.3  2  AAA_25        AAA domain
        1.8    9.3  14.3       0.37   11.4   2.8    2.5  2  Fer4_4        4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   2.2e-19   9.3e-17       9     136 ..     101     249 ..      99     250 .. 0.77
   2 !   52.7   0.1   1.4e-16   6.1e-14       5     137 .]     371     496 ..     367     496 .. 0.76

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 2.2e-19
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE...........EETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkpteGei...........lldgkdlkeqeleslrkeigvlpqepqlfpeltvren................. 79 
                 ++g+++++vG nG GKSt lk+lag+ kp+ G+             ++g +l++  ++ l+  i+ +              +                 
  CCD22501.1 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGKFddppewqdiikYFRGSELQNYFTKMLEDDIKAII-------------Kpqyvdnlpraikgpvqk 186
                 58*******************************94444444443333333333333333333333332.............134555566666677788 PP

                 ..........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                           +++e ++ ++++l+l+++ ++ +     +LSgG+ qr a+ ++ +++++++++DEp+
  CCD22501.1 187 vgellklrmeKDSETVKSYIKTLQLEGVLNREI----DKLSGGELQRFAIGMSCVQDADVYMFDEPS 249
                 8999***99888888******************....*****************************7 PP

  == domain 2  score: 52.7 bits;  conditional E-value: 1.4e-16
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.........HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.........xxxxxxxxxxxxxx RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren.........esdeeiekalsklg 93 
                 s +++ +e+++++GenG+GK+tL+kllag    ++ +            +++ + ++++ pq+ +  fp++ vr+             +  +++++ l+
  CCD22501.1 371 SGDFSDSEILVLMGENGTGKTTLIKLLAGAIPADAAS------------EPVPKLNVSMKPQTiAPRFPGT-VRQLffkkirgqfLNPQFQTDVVKPLK 456
                 568999************************9875555............4556666666666655555555.555555433333333333778888999 PP

                 TGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++++ d+ v    ++LSgG+ qrva++ +l  +++++l+DEp+a
  CCD22501.1 457 IDDIIDQEV----KHLSGGELQRVAIVLSLGIAADIYLIDEPSA 496
                 888888887....*****************************75 PP

>> RLI  Possible Fer4-like domain in RNase L inhibitor, RLI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   4.4   3.5e-17   1.5e-14       2      35 .]       7      37 ..       6      37 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 3.5e-17
                -EEEES---------TTHHHHHTTSEEEESS--S CS
         RLI  2 rlAivdadqCdPKKCtgkkcarfcpvrlvrtgkk 35
                r+Aiv ad+C+PKKC++ +c+r+cpv  v+tgk+
  CCD22501.1  7 RIAIVSADRCKPKKCHQ-ECKRSCPV--VKTGKL 37
                9****************.********..****95 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   1.0   0.00025      0.11       3      39 ..     107     137 ..     105     158 .. 0.71
   2 ?    7.1   0.0      0.01       4.3     178     268 ..     146     250 ..     125     251 .. 0.72
   3 !   14.4   0.1   5.7e-05     0.024       2      22 ..     380     400 ..     379     428 .. 0.84
   4 !    9.2   0.0    0.0022      0.94     231     276 ..     462     511 ..     425     524 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00025
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsgg 39 
                 +l+G Ng GKS+ L++l      ++ +++   ++++ 
  CCD22501.1 107 GLVGTNGIGKSTALKIL------AGKQKPNLGKFDDP 137
                 79***************......44555555555444 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.01
      AAA_21 178 fakekrllqrlvrslklveielsdlgegeeliasvderlrer.................gvvflengdgqelparelSdGtkrllalltallralkkgs 259
                 + +  +l   +++ l ++   + + +++++l+  ++ + + +                 ++ +l  ++  ++ +++lS G ++ +a+  ++ +++   +
  CCD22501.1 146 YFRGSELQNYFTKMLEDDIKAIIKPQYVDNLPRAIKGPVQKVgellklrmekdsetvksYIKTLQLEGVLNREIDKLSGGELQRFAIGMSCVQDA---D 241
                 44445555555555555555555555555665555555555566666666666677777999*********************************...9 PP

      AAA_21 260 llliDEpEn 268
                 ++ +DEp +
  CCD22501.1 242 VYMFDEPSS 250
                 *******65 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 5.7e-05
      AAA_21   2 nvliGpNgsGKSnLLdaldll 22 
                  vl G Ng+GK++L+++l ++
  CCD22501.1 380 LVLMGENGTGKTTLIKLLAGA 400
                 6999**************877 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0022
      AAA_21 231 elparelSdGtkrllalltallralkkgsllliDEpEngLHP.......kllr 276
                 +  + +lS G ++  a++++l  a+   +++liDEp + L+        k++r
  CCD22501.1 462 DQEVKHLSGGELQRVAIVLSLGIAA---DIYLIDEPSAYLDSeqriicsKVIR 511
                 3346689***99999**********...9**********99854444444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0034       1.5      16      63 ..      94     137 ..      91     235 .. 0.67
   2 !   21.0   0.0   8.4e-07   0.00036      21     123 ..     371     480 ..     364     568 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0034
      AAA_16  16 lervrsgrp.elvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 l+r+ ++rp +++ l+G  G+GKs+ ++ l+   + +      gk+d+ 
  CCD22501.1  94 LHRLPTPRPgQVLGLVGTNGIGKSTALKILAGKQKPN-----LGKFDDP 137
                 78889999989999*************9888655555.....7777777 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 8.4e-07
      AAA_16  21 sgrp...elvllsGesGvGKsslvrellralekd.........ggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala 106
                 sg+    e+++l Ge G+GK++l++ l+ a+ +d         +   ++ k +     +p+ +  +++l+++++  q l++ + +     + k+++ + 
  CCD22501.1 371 SGDFsdsEILVLMGENGTGKTTLIKLLAGAIPADaasepvpklN---VSMKPQTI---APRFPgTVRQLFFKKIRGQFLNP-QFQTDVVKPLKIDDIID 462
                 55555559*********************999994443322221...33333333...66655566666666777777777.33344444444444444 PP

      AAA_16 107 .avpelagaeasrllell 123
                  +v++l+g e +r++ +l
  CCD22501.1 463 qEVKHLSGGELQRVAIVL 480
                 555555555555554444 PP

>> Fer4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.5       4.5   1.9e+03      13      20 ..      24      31 ..      23      32 .. 0.87
   2 !   30.1   3.8   6.6e-10   2.8e-07       3      24 .]      50      71 ..      48      71 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 4.5
                HHHHHSTT CS
        Fer4 13 aCvevCPv 20
                +C   CPv
  CCD22501.1 24 ECKRSCPV 31
                5999***8 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 6.6e-10
                EETTTSSS-THHHHHSTTTEEE CS
        Fer4  3 ideekCigCGaCvevCPvgAIt 24
                i e +CigCG+Cv+ CP++AIt
  CCD22501.1 50 ISEILCIGCGICVKKCPFDAIT 71
                56669****************7 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1    0.0011      0.49      16     190 ..      95     271 ..      87     295 .. 0.71
   2 ?    5.0   0.0     0.033        14      24      42 ..     377     395 ..     367     400 .. 0.81
   3 !   11.4   0.0   0.00036      0.16     135     185 ..     466     512 ..     427     541 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
                 EEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTC....HCCCCCC--BTTCSSTTEEEEEEEEEETTEE...SSSSSSCEEEEEEEETTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxx RF
       SMC_N  16 ktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrs....eklsdlihkskekasvkkaeveitfdnedkk...lkiekeevsisrrvkrkg 107
                 ++  +p   ++  +vG NG GKs  l     + G+++  +l +     + +d+i++  +++++++   +++ d+ ++    + +++    i+  v++ g
  CCD22501.1  95 HRLPTPRPGQVLGLVGTNGIGKSTALKI---LAGKQKP-NLGKfddpPEWQDIIKY-FRGSELQNYFTKMLEDDIKAIikpQYVDNLPRAIKGPVQKVG 188
                 5555566667778999999999975554...4776554.55542222578999999.556666665556654444433544566666678888888888 PP

                 E.EEEEETTEEE-HHHHHHHHHCTT-...STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTS CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 108 e.seykingkevtkkevsellesagi...skelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskna 190
                 e  + ++++ + t k + + l+ +g+   +++ LSgGe +  a+ +      v+ a +y++De  +  D k++ + a+++++    +
  CCD22501.1 189 ElLKLRMEKDSETVKSYIKTLQLEGVlnrEIDKLSGGELQRFAIGM----SCVQDADVYMFDEPSSYSDVKQRLNAATIIRSLLGPT 271
                 878999999999999999999999883334679*****98766655....5788999*********************999876543 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.033
                 SSEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  24 ksftaivGpNGSGKsnlld 42 
                 +++ +++G+NG GK+ l+ 
  CCD22501.1 377 SEILVLMGENGTGKTTLIK 395
                 567899*********9985 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00036
                 TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellke 185
                 + LSgGe + va+ L + i     a +yl+De  a LD +++ + ++++++
  CCD22501.1 466 KHLSGGELQRVAIVLSLGIA----ADIYLIDEPSAYLDSEQRIICSKVIRR 512
                 58*****9999888888885....67*****************99999985 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.056        24       6      28 ..     104     126 ..     101     141 .. 0.84
   2 !   20.2   0.0   1.3e-06   0.00054       6      72 ..     378     454 ..     373     515 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.056
      AAA_22   6 gilvvtGesGtGKTtllrrlleq 28 
                 ++l ++G  G+GK+t l+ l+ +
  CCD22501.1 104 QVLGLVGTNGIGKSTALKILAGK 126
                 566799***********988765 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.3e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.......erpevvfvtlpsstsskdllrellralglelka....er 72 
                  ilv++Ge GtGKTtl++ l+   +++a+ e        ++p+++    p+   ++ +++++  ++ +++      ++
  CCD22501.1 378 EILVLMGENGTGKTTLIKLLAGAIPADAASEPvpklnvsMKPQTIAPRFPGTV-RQLFFKKIRGQFLNPQFQtdvvKP 454
                 699*********************99999888987666666665555544444.445588888888887777555533 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0019       0.8      97     126 ..     101     130 ..      76     136 .. 0.80
   2 !   13.8   0.0   9.8e-05     0.042      98     122 ..     376     400 ..     341     413 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0019
                  CTTSEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinallpelelk 126
                    +++  lvG  G+GKSt ++ l+++++ +
   CCD22501.1 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPN 130
                  5578899*****************998765 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 9.8e-05
                  TTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpe 122
                  ++++ vl+G+ G GK+tLi+ l++ 
   CCD22501.1 376 DSEILVLMGENGTGKTTLIKLLAGA 400
                  44899****************9986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00043      0.18      28      48 ..     108     124 ..     102     223 .. 0.68
   2 !   11.6   0.2   0.00039      0.17      22      43 ..     375     397 ..     369     466 .. 0.85
   3 ?   -0.1   0.1       1.4   5.9e+02     325     356 ..     487     518 ..     432     539 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00043
      AAA_15  28 liGkNnsGKSsilealdlFln 48 
                 l+G+N++GKS++l++l     
  CCD22501.1 108 LVGTNGIGKSTALKIL----A 124
                 8*************99....3 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00039
      AAA_15  22 see.ltvliGkNnsGKSsileal 43 
                 s++ + vl G+N++GK++++++l
  CCD22501.1 375 SDSeILVLMGENGTGKTTLIKLL 397
                 554599***************98 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.4
      AAA_15 325 villiEEPEahLHpqaqkvlikllkelandnk 356
                 +i+li+EP a+L  ++  +  k +++ +  nk
  CCD22501.1 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNK 518
                 68********9977777777777766666665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0056       2.4       3      51 ..     108     169 ..     106     189 .. 0.72
   2 !   14.3   0.0   9.3e-05      0.04       2      24 ..     381     403 ..     380     446 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0056
                 EESSTTSSHHHHHHHHHHHHTHE.............EEEEETTTCSSSSTTHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakelgve.............fleisgsellskyvgesekkirelfk 51 
                 l+G+ G+GK+++ k +a + + +             +  + gsel + + +  e++i++++k
  CCD22501.1 108 LVGTNGIGKSTALKILAGKQKPNlgkfddppewqdiIKYFRGSELQNYFTKMLEDDIKAIIK 169
                 89*****************8755444445555555556666666666666666666666655 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 9.3e-05
                 EEESSTTSSHHHHHHHHHHHHTH CS
         AAA   2 llyGppGtGKTllakavakelgv 24 
                 +l+G  GtGKT+l+k +a  + +
  CCD22501.1 381 VLMGENGTGKTTLIKLLAGAIPA 403
                 799***************99643 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1    0.0032       1.4      12      39 ..      92     120 ..      88     128 .. 0.83
   2 !   11.6   0.1   0.00041      0.18      18      39 ..     373     394 ..     366     402 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0032
      AAA_29  12 fdghtieidlkg.atlltGpsGsGKSTll 39 
                 f+ h+++  + g +  l+G++G GKST l
  CCD22501.1  92 FKLHRLPTPRPGqVLGLVGTNGIGKSTAL 120
                 6667778877887888***********76 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00041
      AAA_29  18 eidlkgatlltGpsGsGKSTll 39 
                 +++ +++ +l+G++G+GK+Tl+
  CCD22501.1 373 DFSDSEILVLMGENGTGKTTLI 394
                 566667899************8 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.1   0.00091      0.39      43      76 ..     101     134 ..      89     158 .. 0.83
   2 ?   -2.5   0.0       9.9   4.2e+03     121     157 ..     156     192 ..     143     201 .. 0.76
   3 !    7.3   0.0    0.0093         4      45      66 ..     377     398 ..     365     411 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00091
       Rad17  43 rkkriLLisGPsGCgkstvvkvLskelgiklrew 76 
                 r+ ++L + G  G gkst++k+L+ +  ++l ++
  CCD22501.1 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGKF 134
                 56789******************98887777665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 9.9
       Rad17 121 klqklGddlrtdkklilvedlPnkfyrdsdalrevir 157
                   ++l dd+++  k  +v++lP   ++ ++++ e+++
  CCD22501.1 156 FTKMLEDDIKAIIKPQYVDNLPRAIKGPVQKVGELLK 192
                 5577889999999999999999988888877777765 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0093
       Rad17  45 kriLLisGPsGCgkstvvkvLs 66 
                  +iL++ G  G gk+t +k L+
  CCD22501.1 377 SEILVLMGENGTGKTTLIKLLA 398
                 56******************98 PP

>> Fer4_6  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   2.4      0.56   2.4e+02       3      20 ..      10      30 ..       8      35 .. 0.83
   2 !   19.4   3.1   1.8e-06   0.00078       8      24 .]      54      70 ..      47      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.56
      Fer4_6  3 eidpdkCi..gC.gdCvrvCP 20
                 + +d+C    C  +C r CP
  CCD22501.1 10 IVSADRCKpkKChQECKRSCP 30
                57789**9888*888*****9 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.8e-06
      Fer4_6  8 kCigCgdCvrvCPegai 24
                +CigCg Cv+ CP++ai
  CCD22501.1 54 LCIGCGICVKKCPFDAI 70
                8**************98 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.7       0.8   3.4e+02      33      50 ..      11      31 ..       2      33 .. 0.71
   2 !   19.6   0.4   2.4e-06     0.001       2      19 ..      55      72 ..      54      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.8
      Fer4_7 33 idpekCl..gCga.CvavCPt 50
                +++++C    C++ C + CP+
  CCD22501.1 11 VSADRCKpkKCHQeCKRSCPV 31
                457888544798889999997 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 2.4e-06
      Fer4_7  2 CigCgaCvaaCpvkaiel 19
                CigCg Cv+ Cp +ai++
  CCD22501.1 55 CIGCGICVKKCPFDAITI 72
                ***************997 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   3.9       1.1   4.5e+02      24      38 ..     108     122 ..     102     261 .. 0.85
   2 !   15.8   0.0   3.5e-05     0.015      16      42 ..     373     400 ..     360     483 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 1.1
      AAA_23  24 ItGpNGaGKTTildA 38 
                 ++G NG GK+T l  
  CCD22501.1 108 LVGTNGIGKSTALKI 122
                 79*********8865 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3.5e-05
      AAA_23  16 dF.skgltlItGpNGaGKTTildAikla 42 
                 dF ++ + ++ G+NG+GKTT++  +  a
  CCD22501.1 373 DFsDSEILVLMGENGTGKTTLIKLLAGA 400
                 67667999**************988766 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2      0.11        48      19      39 ..     104     124 ..      98     133 .. 0.86
   2 ?   -2.1   0.0       6.4   2.7e+03      61     100 ..     190     251 ..     182     265 .. 0.73
   3 !   11.5   0.0   0.00042      0.18      18      44 ..     377     403 ..     367     417 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.11
      AAA_30  19 rvavltGpAGtGKttalkalr 39 
                 +v  l+G  G GK+talk l+
  CCD22501.1 104 QVLGLVGTNGIGKSTALKILA 124
                 68889************9886 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.4
      AAA_30  61 vLaeelgieastiakllkrlk......................grarlepgtllivDEagmv 100
                  L+  ++ +++t+++++k+l+                      g+  ++++++++ DE +  
  CCD22501.1 190 LLKLRMEKDSETVKSYIKTLQlegvlnreidklsggelqrfaiGMSCVQDADVYMFDEPSSY 251
                 45555666888899888888888888888888888888888886566677788888887755 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00042
      AAA_30  18 drvavltGpAGtGKttalkalreawea 44 
                   + vl G  GtGKtt++k l+ a+ a
  CCD22501.1 377 SEILVLMGENGTGKTTLIKLLAGAIPA 403
                 45899***************9988766 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.3      0.02       8.6       4      24 ..     105     127 ..     103     168 .. 0.82
   2 !   10.2   0.0    0.0011      0.47       5      22 ..     380     397 ..     377     406 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.02
      AAA_24   4 kiliyGpsgiGKTtlakel..gp 24 
                  + ++G +giGK+t +k l  ++
  CCD22501.1 105 VLGLVGTNGIGKSTALKILagKQ 127
                 57899**********99985533 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0011
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 ++++G++g+GKTtl+k l
  CCD22501.1 380 LVLMGENGTGKTTLIKLL 397
                 689************987 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0027       1.1      21      78 ..     104     162 ..      93     186 .. 0.78
   2 ?    6.4   0.1      0.01       4.5      19      38 ..     376     395 ..     367     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0027
                 EEEEEEESTTSSHHHHHHHHCCSHCCCCCCBT.EEEEEEEESXXHHHHHHHXXHHHHHC CS
      NB-ARC  21 lvvalvGmgGvGKttlakqilnksdevegrFd.svawvvvsktdkseeiletilkeLsl 78 
                  v++lvG  G+GK+t +k    k +   g+Fd    w  + k +  +e+++   k L++
  CCD22501.1 104 QVLGLVGTNGIGKSTALKILAGKQKPNLGKFDdPPEWQDIIKYFRGSELQNYFTKMLED 162
                 599************99988888788888998667888888888888888777777744 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.01
                 CSEEEEEEESTTSSHHHHHH CS
      NB-ARC  19 qslvvalvGmgGvGKttlak 38 
                 +s ++ l+G  G GKttl+k
  CCD22501.1 376 DSEILVLMGENGTGKTTLIK 395
                 5669**************86 PP

>> Fer4_21  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  12.6   1.3e-05    0.0057      10      58 ..      20      71 ..       9      72 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-05
     Fer4_21 10 gC.gkCliaCe..dtshqaieidaktvlkvved.eCvGCnlCssvCPvedcie 58
                +C ++C  +C+  +t+  +ie+++ ++++ +++  C+GC +C++ CP  d+i+
  CCD22501.1 20 KChQECKRSCPvvKTGKLCIEVTPTSKIAFISEiLCIGCGICVKKCPF-DAIT 71
                3312455555533477899****999999885549************7.9997 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.072        31       3      20 ..     108     125 ..     106     158 .. 0.87
   2 !    9.7   0.0    0.0025       1.1       2      23 ..     381     402 ..     380     422 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.072
  RNA_helicase   3 lyGpsgeGKStlakeLak 20 
                   l+G +g+GKSt+ k La 
    CCD22501.1 108 LVGTNGIGKSTALKILAG 125
                   78***********99875 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0025
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   +l G++g+GK+tl+k La a+ 
    CCD22501.1 381 VLMGENGTGKTTLIKLLAGAIP 402
                   799*************998875 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.4     0.063        27       3      21 ..     106     124 ..     104     131 .. 0.84
   2 !   10.5   0.0     0.001      0.43       2      23 ..     379     400 ..     378     411 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.063
                 EEEEC-TTTCHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqkla 21 
                 + l G +G+GK+t l+ la
  CCD22501.1 106 LGLVGTNGIGKSTALKILA 124
                 5689**********99876 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.001
                 CEEEEC-TTTCHHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklala 23 
                 +++l Ge+G GKTtL++ la a
  CCD22501.1 379 ILVLMGENGTGKTTLIKLLAGA 400
                 5799************988865 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1      0.04        17       4      21 ..     108     125 ..     106     135 .. 0.86
   2 !    9.6   0.0    0.0025         1       3      20 ..     381     398 ..     379     411 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.04
      AAA_28   4 itGgestGKTtlleaLaa 21 
                 ++G+ + GK+t l+ La 
  CCD22501.1 108 LVGTNGIGKSTALKILAG 125
                 68**************95 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0025
      AAA_28   3 vitGgestGKTtlleaLa 20 
                 v++G  +tGKTtl++ La
  CCD22501.1 381 VLMGENGTGKTTLIKLLA 398
                 899*************99 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.8   1.3e-05    0.0056       9      21 ..      54      66 ..      46      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.3e-05
      Fer4_2  9 rCigCgaCvsaCP 21
                 CigCg+Cv+ CP
  CCD22501.1 54 LCIGCGICVKKCP 66
                7************ PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8  11.4   2.8e-05     0.012       6      51 .]      19      70 ..      14      70 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.8e-05
      Fer4_9  6 gaCveaCpagvvvedaaerkarlraase......eaCigCgaCveaCpkgai 51
                ++C++ C+    v + ++  ++++ +s+        CigCg Cv++Cp +ai
  CCD22501.1 19 KKCHQECKRSCPVVKTGKLCIEVTPTSKiafiseILCIGCGICVKKCPFDAI 70
                357777877777777777777777777777788899************9987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2         1   4.4e+02       4      20 ..     108     124 ..     106     130 .. 0.87
   2 !   13.1   0.0   0.00017     0.072       2      24 ..     380     404 ..     379     423 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1
                 EE--SSSSHHHHHHHGG CS
       AAA_5   4 LvGppGtgKselaerla 20 
                 LvG  G+gKs+  + la
  CCD22501.1 108 LVGTNGIGKSTALKILA 124
                 9*********9988776 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00017
                 EEEE--SSSSHHHHHHHGGGGB..S CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..n 24 
                 ++L G+ GtgK++l++ la a+   
  CCD22501.1 380 LVLMGENGTGKTTLIKLLAGAIpaD 404
                 78*****************999442 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.86   3.7e+02      38      53 ..     108     123 ..     101     132 .. 0.79
   2 !   12.2   0.0   0.00022     0.093      36      98 ..     380     446 ..     374     461 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.86
       AAA_7  38 lvGptGtGKtviikdl 53 
                 lvG+ G GK++ +k l
  CCD22501.1 108 LVGTNGIGKSTALKIL 123
                 89********998765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00022
       AAA_7  36 vllvGptGtGKtviikdllkkld....kekylsltinfsaqtsanqlqdiiesklekrrkgvygPpg 98 
                 ++l+G+ GtGKt++ik l  +++    +e +  l+++++ qt a ++  ++ + + k+ +g +  p+
  CCD22501.1 380 LVLMGENGTGKTTLIKLLAGAIPadaaSEPVPKLNVSMKPQTIAPRFPGTVRQLFFKKIRGQFLNPQ 446
                 6799************999888722223455678999999999999999999988777776665444 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   5.4      0.33   1.4e+02       3      21 ..      10      31 ..       8      53 .. 0.77
   2 !   16.2   1.6     2e-05    0.0087       4      23 ..      50      69 ..      47      94 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.33
     Fer4_10  3 vidddtC..irCg.kCvkaCPa 21
                ++ +d+C   +C  +C+++CP+
  CCD22501.1 10 IVSADRCkpKKCHqECKRSCPV 31
                56778996569988*******9 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2e-05
     Fer4_10  4 idddtCirCgkCvkaCPadl 23
                i +  Ci+Cg Cvk CP+d+
  CCD22501.1 50 ISEILCIGCGICVKKCPFDA 69
                56678************965 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.021         9       3      36 ..     108     151 ..     106     199 .. 0.73
   2 ?    6.9   0.0     0.021       8.8       2      19 ..     381     398 ..     380     416 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.021
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf.........gvnlrdvakeng 36 
                 l Gt G GK+t  k L+ +   +         ++ ++++++ ++
  CCD22501.1 108 LVGTNGIGKSTALKILAGKQkPNlgkfddppeWQDIIKYFRGSE 151
                 89**************7665333455577777444444444444 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.021
      AAA_18   2 lltGtpGvGKttlakeLs 19 
                 +l+G  G+GKttl k L+
  CCD22501.1 381 VLMGENGTGKTTLIKLLA 398
                 588999*********996 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0      0.04        17       3      43 ..     104     139 ..     102     187 .. 0.68
   2 ?    7.2   0.0     0.012         5       3      25 ..     378     400 ..     376     450 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.04
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderd 43 
                 ++l ++G   +GK+t lk l+ ++          ++dd+++
  CCD22501.1 104 QVLGLVGTNGIGKSTALKILAGKQK-----PNLGKFDDPPE 139
                 68899************99997766.....44445555554 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.012
      AAA_14   3 kilvitGaRrvGKTtllkqlike 25 
                 +ilv++G   +GKTtl+k l+  
  CCD22501.1 378 EILVLMGENGTGKTTLIKLLAGA 400
                 799**************998854 PP

>> VirE  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0     0.006       2.6      53     112 ..     104     160 ..      93     180 .. 0.69
   2 ?    5.0   0.0     0.042        18      53      76 ..     378     401 ..     367     417 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.006
        VirE  53 fvlvLvGkqgsgKstflekl.geewftdslksvedkdavekiqgvliveiaEleasnkaev 112
                 +vl LvG  g+gKst l++l g++    +l +++d  + + i +++    +El++  ++ +
  CCD22501.1 104 QVLGLVGTNGIGKSTALKILaGKQ--KPNLGKFDDPPEWQDIIKYFR--GSELQNYFTKML 160
                 6899****************5543..455666666666666666553..356666555444 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.042
        VirE  53 fvlvLvGkqgsgKstfleklgeew 76 
                 ++lvL G+ g+gK+t+++ l+++ 
  CCD22501.1 378 EILVLMGENGTGKTTLIKLLAGAI 401
                 699***************997665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1      0.06        26       3      22 ..     107     126 ..     105     137 .. 0.84
   2 ?    8.3   0.0    0.0054       2.3       3      28 ..     381     407 ..     379     527 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.06
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 ++vG    GKSt ++ l g+
  CCD22501.1 107 GLVGTNGIGKSTALKILAGK 126
                 89*************99997 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0054
                 EEEESTTSSHHHHHHHHHTS.TEEESS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.kaivsd 28 
                 +++G   +GK+tLi+ l g+  a +++
  CCD22501.1 381 VLMGENGTGKTTLIKLLAGAiPADAAS 407
                 789***************965333333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.057        24       4      23 ..     108     127 ..     105     169 .. 0.90
   2 ?    7.8   0.0    0.0079       3.4       2      24 ..     380     402 ..     379     452 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.057
      AAA_33   4 lvGlpGsGKstlaerllkkl 23 
                 lvG +G GKst ++ l+ k+
  CCD22501.1 108 LVGTNGIGKSTALKILAGKQ 127
                 89**********99988776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0079
      AAA_33   2 vllvGlpGsGKstlaerllkklg 24 
                 ++l G +G+GK+tl++ l+ + +
  CCD22501.1 380 LVLMGENGTGKTTLIKLLAGAIP 402
                 6789***********99987655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.3   5.5e+02      19      40 ..     103     124 ..      84     130 .. 0.78
   2 ?   11.4   0.0   0.00057      0.24      19      43 ..     377     401 ..     357     410 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.3
                 TEEEEEEESTTSSHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrgla 40 
                 g+v+ L G  G GK+t  + la
  CCD22501.1 103 GQVLGLVGTNGIGKSTALKILA 124
                 77899***********998876 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00057
                 TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakal 43 
                 +++++L G+ G+GKTtl++ la a+
  CCD22501.1 377 SEILVLMGENGTGKTTLIKLLAGAI 401
                 4679***************998776 PP

>> Fer4_16  4Fe-4S double cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.4     5e-05     0.021       2      18 ..      55      71 ..      54      93 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5e-05
     Fer4_16  2 CgtCgkCaevCPtnaik 18
                C++Cg C++ CP +ai+
  CCD22501.1 55 CIGCGICVKKCPFDAIT 71
                9**************97 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       0.6   2.6e+02       5      22 ..     110     127 ..     106     163 .. 0.74
   2 ?   10.7   0.0   0.00082      0.35       2      47 ..     381     436 ..     380     454 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.6
                 ESTTSSHHHHHHHHHCCS CS
         dNK   5 GnIgaGKstlvklLskkl 22 
                 G+ g GKst +k+L+ k 
  CCD22501.1 110 GTNGIGKSTALKILAGKQ 127
                 77799*********8654 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00082
                 EEEESTTSSHHHHHHHHHCCSTCEEEE-HHHHCCSSSS...........HHHHHHHH CS
         dNK   2 vveGnIgaGKstlvklLskklgvkvfeEpvdkwtnvqk...........nlLekfYk 47 
                 v+ G  g GK+tl+klL+ +++  +++Epv k  nv             ++ ++f+k
  CCD22501.1 381 VLMGENGTGKTTLIKLLAGAIPADAASEPVPKL-NVSMkpqtiaprfpgTVRQLFFK 436
                 677999************************998.44444555555555555555555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.9     0.038        16       3      24 ..     105     126 ..     103     133 .. 0.83
   2 ?    8.9   0.1    0.0025       1.1       3      23 ..     379     399 ..     377     408 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.038
                 EEEEEESTTSSHHHHHHHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLaal 24 
                 v+ lvG++G+GK t+l  La +
  CCD22501.1 105 VLGLVGTNGIGKSTALKILAGK 126
                 5679***********9999865 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0025
                 EEEEEESTTSSHHHHHHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKLaa 23 
                 +++l+G +G+GKTt +  La 
  CCD22501.1 379 ILVLMGENGTGKTTLIKLLAG 399
                 789************998886 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   1.6       2.4     1e+03      46      57 ..      21      30 ..       4      34 .. 0.73
   2 ?   13.8   0.1   0.00015     0.063       2      15 ..      55      68 ..      53      95 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 2.4
     Fer4_17 46 CieCgeCerkCP 57
                C+  +eC+r+CP
  CCD22501.1 21 CH--QECKRSCP 30
                33..47888888 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 0.00015
     Fer4_17  2 CiqCgyClpeCpsy 15
                Ci+Cg C+++Cp+ 
  CCD22501.1 55 CIGCGICVKKCPFD 68
                67777777777654 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.15        65      58      75 ..     108     125 ..      95     131 .. 0.83
   2 ?    6.0   0.0     0.013       5.8      56      76 ..     380     400 ..     371     407 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.15
      DUF815  58 LwGarGtGKSslvkalln 75 
                 L+G+ G GKS+ +k l  
  CCD22501.1 108 LVGTNGIGKSTALKILAG 125
                 99**********998875 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.013
      DUF815  56 vLLwGarGtGKSslvkallne 76 
                 ++L+G+ GtGK +l+k l  +
  CCD22501.1 380 LVLMGENGTGKTTLIKLLAGA 400
                 579*************88765 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   2.6       1.9   8.3e+02       9      20 ..      23      34 ..      13      46 .. 0.75
   2 ?   12.4   0.1    0.0004      0.17       5      17 ..      55      67 ..      53     105 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.9
      Fer4_8  9 gaCqsaCpvlrr 20
                + C+ +Cpv+++
  CCD22501.1 23 QECKRSCPVVKT 34
                468888888775 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.0004
      Fer4_8  5 CieCgaCqsaCpv 17
                Ci+Cg C ++Cp+
  CCD22501.1 55 CIGCGICVKKCPF 67
                ***********93 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       3.3   1.4e+03      23      40 ..     110     127 ..     108     135 .. 0.82
   2 ?    8.7   0.0    0.0014      0.59      20      39 ..     381     400 ..     370     423 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.3
      AAA_13  23 GwNGaGKTtLSrllrsle 40 
                 G+NG GK+t  ++l+  +
  CCD22501.1 110 GTNGIGKSTALKILAGKQ 127
                 9********999988754 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0014
      AAA_13  20 liYGwNGaGKTtLSrllrsl 39 
                 ++ G NG+GKTtL +ll+  
  CCD22501.1 381 VLMGENGTGKTTLIKLLAGA 400
                 677***********999875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2      0.85   3.6e+02      33      50 ..     103     120 ..      99     126 .. 0.83
   2 ?    7.9   0.0    0.0047         2      32      57 ..     376     401 ..     368     423 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.85
      AAA_25  33 gelallaGapgtGKttla 50 
                 g +  l+G  g GK+t++
  CCD22501.1 103 GQVLGLVGTNGIGKSTAL 120
                 667779**********87 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0047
      AAA_25  32 agelallaGapgtGKttlaldlalav 57 
                   e+ +l+G  gtGKttl   la a+
  CCD22501.1 376 DSEILVLMGENGTGKTTLIKLLAGAI 401
                 578899************98887665 PP

>> Fer4_4  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   3.8       0.5   2.1e+02       2      15 ..      14      30 ..      13      35 .. 0.78
   2 ?   11.4   2.8   0.00087      0.37       4      16 ..      55      67 ..      53      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.5
      Fer4_4  2 erCi..gCgs.CvaaCP 15
                +rC    C + C ++CP
  CCD22501.1 14 DRCKpkKCHQeCKRSCP 30
                78844488878****** PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00087
      Fer4_4  4 CigCgsCvaaCPq 16
                CigCg Cv  CP+
  CCD22501.1 55 CIGCGICVKKCPF 67
                ************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              42  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.39
# Mc/sec: 4635.96
//
Query:       CCD22502.1  [L=178]
Description: hypothetical protein NDAI_0A03450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-07   31.5   7.3    2.9e-07   30.4   7.3    1.6  1  mRNA_triPase  mRNA capping enzyme, beta chain


Domain annotation for each model (and alignments):
>> mRNA_triPase  mRNA capping enzyme, beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   7.3   1.6e-11   2.9e-07     116     218 ..      35     142 ..       1     143 [. 0.76

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 1.6e-11
                   --EEEEEEETTT--EEEEEEEEEEEEEEEE-TTSSSEEEEEEEEEEE-SSS..HHHCTTS--SEEEEEEEEEEE....ECCGTEEEEEEEESSS--- CS
  mRNA_triPase 116 kskirvskdsenqevlkkieKeriadlniylPnsklDyriSinlElpvses..kaklskktpvseRlkeRlSyi....hkksgiqfDLtkvektekt 206
                    ++ rvs ++++++++ +i+K +     i l  +++D++  i+lE +++        ++++  ++Rlk R +++    + +  + +DL+ + ++  +
    CCD22502.1  35 FHQGRVSMEKDSNKIIGAIKKDKKFMEIIQLVGNEYDMKFTIALEKKIDLPdwFDVTKERKVDPTRLKHRYTFKrignEINNNVSIDLSEI-RNCDK 130
                   345599999999**********9999999******************999955455566677789********833321233589******.55578 PP

                   S--EEEEEEEEE CS
  mRNA_triPase 207 kkteekyElEiE 218
                   +++e kyE+E+E
    CCD22502.1 131 EEEEAKYEIELE 142
                   9999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1355.82
//
Query:       CCD22503.1  [L=265]
Description: hypothetical protein NDAI_0A03460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-23   81.1  11.8    1.1e-18   66.7   1.9    2.8  2  PQ-loop          PQ loop repeat
  ------ inclusion threshold ------
       0.35   10.4  23.5      0.042   13.4  11.9    2.3  2  ABC2_membrane_5  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   1.9   1.3e-22   1.1e-18       3      58 ..       8      63 ..       6      66 .. 0.94
   2 !   19.0   2.6     1e-07    0.0009       4      54 ..     133     184 ..     132     197 .. 0.94

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 1.3e-22
     PQ-loop  3 eilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfp 58
                ++l ++++++w+v++iPQii N+krk ++Gl + +++lw++++i++++y+++++ +
  CCD22503.1  8 TALATVATICWCVQLIPQIIYNWKRKDCTGLPPIMMFLWVISGIPFAIYFCVSRGN 63
                67999**********************************************99877 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1e-07
     PQ-loop   4 ilgyislvlwlvsyiPQiikNykrkSt.eGlSilflllwllGdilsllylil 54 
                 i+g++++vl ++ ++P + +  krk   +G++++fl+++ lG ++s+++ il
  CCD22503.1 133 IFGILATVLLAIGLLPPYFELAKRKGRvVGINFWFLFIDSLGAWFSIVSVIL 184
                 79**********************9766*********************998 PP

>> ABC2_membrane_5  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   8.9       0.2   1.8e+03      85     155 ..      42     106 ..      40     123 .. 0.59
   2 ?   13.4  11.9   4.6e-06     0.042     111     198 ..     123     209 ..      94     220 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.2
  ABC2_membrane_5  85 fvlililiailitlllliiavlikgnvtisevllsiliglvialiflaivlPlyfkfgvekgrivliiiif 155
                      +++++++++i + + ++    + +gnv i +v   ++++++ +++++++++P + k+  +k+ +v++ i +
       CCD22503.1  42 MMFLWVISGIPFAIYFC----VSRGNV-ILQVQPHLFMFFCSISFVQSCYYPPT-KLALWKIITVVVGIAI 106
                      44444444444444444....344555.45666777888888888888888876.4444555554444444 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.6e-06
  ABC2_membrane_5 111 vtisevllsiliglvialiflaivlPlyfkfgvekgrivliiiifgiifllvaifslsklelslidlsnyilliillviillliivSy 198
                      ++    + ++++g++ ++++ + +lP yf +  +kgr+v i  +f++i  l a fs+ +++l + d+  +il+++++++ l ++i   
       CCD22503.1 123 YDRGIHWPDLIFGILATVLLAIGLLPPYFELAKRKGRVVGINFWFLFIDSLGAWFSIVSVILGNMDVMGIILYCVIAGMELGIFIS-H 209
                      5555568999*************************************99*************************999997665543.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1149  (0.0640861); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1942.87
//
Query:       CCD22504.1  [L=457]
Description: hypothetical protein NDAI_0A03470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-13   50.2   9.9    7.7e-07   28.6   1.1    3.3  3  ATG19_autophagy  Autophagy protein Atg19, Atg8-binding
  ------ inclusion threshold ------
       0.05   13.2   3.7        1.1    8.8   0.2    2.9  3  DUF4796          Domain of unknown function (DUF4796)
       0.17   12.2   4.4       0.24   11.7   0.8    2.5  2  DUF5623          Domain of unknown function (DUF5623)
       0.79    8.7   7.6        3.1    6.7   2.9    2.2  2  ANTH             ANTH domain


Domain annotation for each model (and alignments):
>> ATG19_autophagy  Autophagy protein Atg19, Atg8-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.3      0.15   6.7e+02      17      91 ..      59     136 ..      53     151 .. 0.60
   2 !   28.6   1.1   1.7e-10   7.7e-07       2      79 ..     171     246 ..     170     256 .. 0.85
   3 !   25.8   0.1   1.2e-09   5.2e-06       1     117 [.     275     377 ..     275     439 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.15
  ATG19_autophagy  17 kikTesqLeevmngYekYekllqkfdgkkkelesvnevealkqiasdesskeakeelatend....rsLrvevtkkdnl 91 
                       +kT ++  ++   +++Y  +  +    ++e++ ++e   ++  +   + k ++++ +++n+    +sL+v+ +k++n+
       CCD22504.1  59 DLKTGKDFGNLCRAFQQYGAVYIRIFDTEEEFQ-KEESIPVEGDNEFPDDKGGNNNRNNKNNnngiNSLKVDPKKSGNS 136
                      678888888888888888888888888888866.444333333333333333333333333211235777777777776 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.7e-10
  ATG19_autophagy   2 idipednpelvdFFskikTesqLeevmngYekYekllqkfdgkkkelesvnevealkqiasdesskeakeelatendr 79 
                      +dip  n++l+ FF ++k e +Le+++++Ye Y+ l ++ dg+   +e +   eal++ + +++sk+  ++++   ++
       CCD22504.1 171 LDIPIGNKNLISFFQNLKSEDDLEKLVDEYELYQDLKKQYDGHMG-IE-MLLDEALERRRFETESKDSRNKTQLTTQK 246
                      589999************************************987.45.66678899999999999888877755544 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 1.2e-09
  ATG19_autophagy   1 iidipednpelvdFFskikTesqLeevmngYekYekllqkfdgkkkelesvnevealkqiasdesskeakeelatendrsLrvevtkkdnlleF 94 
                      +i+ip++   l +F+ski T ++L+++  gY+ Y++  q +d++++ ++s          a      ++ke ++++ +  + + v++++     
       CCD22504.1 275 TIKIPKSDGFLNEFYSKITTTEKLQDLAIGYNWYKEWIQGCDNNEHLVSS----------A----IYQGKEYMKGKMQCEVSIIVQRNETTWDV 354
                      599***************************************99995432..........2....22233333344444444445555555566 PP

  ATG19_autophagy  95 klfnegdkivpgdlkleFqdeas 117
                      +l n +d  +p ++kl+ +++ s
       CCD22504.1 355 TLENISDDPLPKGMKLVIESYES 377
                      66666666666666666555554 PP

>> DUF4796  Domain of unknown function (DUF4796)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2   0.00024       1.1      97     141 ..     119     166 ..     106     192 .. 0.79
   2 ?    3.9   0.1    0.0079        35     109     140 ..     239     270 ..     223     276 .. 0.84
   3 ?   -1.0   0.0      0.25   1.1e+03     105     127 ..     340     362 ..     318     369 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00024
     DUF4796  97 eekWeqcvlvekvse...slleqwdevLeqvsseekwskerYeeeshn 141
                 +++  +++ v++ ++   + +++ +e+++++ s e+w k++Y+ee++n
  CCD22504.1 119 NNNGINSLKVDPKKSgnsESVNKVNEIMKKMDSLEEWVKKSYTEENNN 166
                 445556666666554111456688999******************998 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0079
     DUF4796 109 vseslleqwdevLeqvsseekwskerYeeesh 140
                  ++ ++++ devL+++++ ek+ k++Ye+e++
  CCD22504.1 239 KTQLTTQKMDEVLAKTAELEKFIKRKYENEKK 270
                 55566789********************9986 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.25
     DUF4796 105 lvekvseslleqwdevLeqvsse 127
                  v+ + +++ ++wd +Le++s++
  CCD22504.1 340 EVSIIVQRNETTWDVTLENISDD 362
                 45556667778999999999876 PP

>> DUF5623  Domain of unknown function (DUF5623)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.8   5.3e-05      0.24      32     106 ..     140     218 ..     126     230 .. 0.68
   2 ?    1.0   0.1      0.11   4.8e+02      80     111 ..     245     278 ..     229     283 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.3e-05
     DUF5623  32 kgvssrlsavrstLddWlemEyseeelddeayfdiYYgdlrlvs..skksekdrlekl...eevrkllkeaYpdckprre 106
                 ++v++ +++    L++W+++ y ee+ +++++ di  g+++l+s  ++  ++d lekl    e+ + lk++Y+    ++ 
  CCD22504.1 140 NKVNE-IMKKMDSLEEWVKKSYTEENNNKRIFLDIPIGNKNLISffQNLKSEDDLEKLvdeYELYQDLKKQYDGHMGIEM 218
                 33333.333335699***********************997765113444458898886323455678888876555555 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.11
     DUF5623  80 ek..drlekleevrkllkeaYpdckprrellakl 111
                 +k  ++l+k  e++k +k++Y++ k +  +++k+
  CCD22504.1 245 QKmdEVLAKTAELEKFIKRKYENEKKQDYITIKI 278
                 2244889999999999999999988888777776 PP

>> ANTH  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2    0.0037        17      98     171 ..      61     160 ..      44     172 .. 0.72
   2 ?    6.7   2.9   0.00069       3.1      97     181 ..     187     271 ..     175     278 .. 0.54

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0037
                 THHHHHHHHHHHHHHHHHHHHHHHHHHSS-.....................CCCS--S.............TTSHCC.C--HHHHHHHHHHHHHHHHHH CS
        ANTH  98 skswdysafiraYakyLderlefhrklkvdk..................gelereeeg........slvavedpnerktlsmeklldkieklqklldrl 170
                 + ++d++ ++ra+ +y   +++ +++ + ++                  g+ +r++++        +   +++ n+    +++++++k+++l++ ++++
  CCD22504.1  61 KTGKDFGNLCRAFQQYGAVYIRIFDTEEEFQkeesipvegdnefpddkgGNNNRNNKNnnnginslKVDPKKSGNSESVNKVNEIMKKMDSLEEWVKKS 159
                 568999999999999999999999999999878777777776666666666666666688999854333333333337778888888888888887765 PP

                 H CS
        ANTH 171 l 171
                  
  CCD22504.1 160 Y 160
                 4 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00069
                 STHHHHHHHHHHHHHHHHHHHHHHHHHHSS-........CCCS--S.....TTSHCC.....C--HHHHHHHHHHHHHHHHHHHTT---GGG-- CS
        ANTH  97 sskswdysafiraYakyLderlefhrklkvdk.....gelereeegslvavedpner....ktlsmeklldkieklqklldrllkckptgnals 181
                  + ++d  +++++Y +y d + ++  ++  +         er     ++++++++++    +t +m+++l k  +l+k+++r    k++ ++++
  CCD22504.1 187 LKSEDDLEKLVDEYELYQDLKKQYDGHMGIEMlldeaL--ERR---RFETESKDSRNktqlTTQKMDEVLAKTAELEKFIKR----KYENEKKQ 271
                 456899***********666666666665554334232..222...223333333331223455566666666666555555....44455444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1484  (0.0827709); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3522.08
//
Query:       CCD22505.1  [L=987]
Description: hypothetical protein NDAI_0A03480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.51   10.5   8.9       0.85    9.7   8.9    1.2  1  Chromate_transp  Chromate transporter


Domain annotation for each model (and alignments):
>> Chromate_transp  Chromate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.9   4.8e-05      0.85      75     154 ..     893     969 ..     882     980 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 4.8e-05
  Chromate_transp  75 iatlgfflPsfllilllaplleklrknplvkaaleglnaavvglilaaalslakkiallaflllllfkvs..pilvillaal 154
                      +++l  +l s l + ++++l+++ ++  ++  +++g+na++v +i+++++sl   i++++ llll+ ++   p +  + + +
       CCD22505.1 893 ASLLISCLTSGLCLGIILALFRENENDDII--VFDGINAVIVVIIVSLLISL---ILICMSLLLLFSRFTfaPAWHYISCFI 969
                      455566666667777777777776555555..9*****************85...444444444444444435333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1440  (0.0803168); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 6973.20
//
Query:       CCD22506.1  [L=384]
Description: hypothetical protein NDAI_0A03490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-17   63.5  22.7    2.5e-17   63.5  22.7    2.8  2  Slu7            Pre-mRNA splicing Prp18-interacting factor
     0.0074   16.3   3.5      0.024   14.7   1.5    2.2  2  zf-CCHC         Zinc knuckle
  ------ inclusion threshold ------
      0.071   13.6   4.7      0.072   13.6   1.1    2.6  2  DUF234          Archaea bacterial proteins of unknown functio
       0.11   12.2   2.9        3.1    7.5   0.5    2.6  2  RPA_interact_N  Replication protein A interacting N-terminal
       0.15   12.0   0.9       0.35   10.8   0.9    1.6  1  PHD             PHD-finger


Domain annotation for each model (and alignments):
>> Slu7  Pre-mRNA splicing Prp18-interacting factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   6.7       3.5   1.2e+04      61      79 ..      40      55 ..       4     130 .. 0.55
   2 !   63.5  22.7   7.1e-21   2.5e-17       1     206 [.     159     352 ..     159     381 .. 0.63

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 3.5
        Slu7 61 sdsdedeeedkddededky 79
                +++++d+e+++++ed   y
  CCD22506.1 40 TEKKNDNETSTKEED---Y 55
                111111111111111...1 PP

  == domain 2  score: 63.5 bits;  conditional E-value: 7.1e-21
        Slu7   1 ldydakRDrwngYdpeeykkvveeyekieeerkklkeeelkkkaaeekekakkkeeeaedsdsdedeeedkdd....ededkyaeeadmagekldeksr 95 
                 +d+dak+Drw gY+ +ey++++e++e+    +kk++ +e ++k++e+         +    d+de+ e    +    +d+    ++ d ++     ++ 
  CCD22506.1 159 MDWDAKKDRWFGYTGKEYNELLENWET----KKKNNTQEPTDKENED---------DM--WDTDEEIELM--QlglyKDSMGHLKKDDENN-----SNL 235
                 69***********************94....3333333333121111.........11..1112111111..1112233222222222222.....222 PP

        Slu7  96 itvrnLRiReDtAkYLlnldlnsakYDPKtRsmrdnplketskkekklfagdnfv.rasgeakefaklqlfAwe.aeekGe..........dvhlqAnP 182
                       R+ReD A+YL ++++  +kYDPK+R  +++    +++k+k       f    +ge  e+++l++f+ + a+e G           +  l AnP
  CCD22506.1 236 KHRTAVRLREDRAAYLNDINSGEIKYDPKSRIYKNEEIGLVDEKSKM------FRrYLTGEGLELNQLNRFSKQhAREAGIrdevedankiNHVLVANP 328
                 3334579*****************************77766666543......552579**************94555544777777777777899*** PP

        Slu7 183 tkaellakefkekkeklkeekkks 206
                 tk e l ke+++++ + +e ++++
  CCD22506.1 329 TKYEQLMKEKTKQNLEQEELQRRK 352
                 *******99887776665554443 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   1.5   6.8e-06     0.024       3      16 ..     106     119 ..     104     119 .. 0.96
   2 ?    1.0   0.0      0.14   5.1e+02       8      15 ..     221     228 ..     220     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.8e-06
                 TSSSSSSSSTTTTS CS
     zf-CCHC   3 CynCGepGHiardC 16 
                 C nCG   H+ +dC
  CCD22506.1 106 CENCGAKDHLRKDC 119
                 ************** PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.14
                 SSSSTTTT CS
     zf-CCHC   8 epGHiard 15 
                 ++GH+++d
  CCD22506.1 221 SMGHLKKD 228
                 69****98 PP

>> DUF234  Archaea bacterial proteins of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.1     2e-05     0.072      13      77 ..     154     217 ..     145     233 .. 0.83
   2 ?   -0.2   0.1      0.38   1.4e+03      33      56 ..     328     351 ..     300     357 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
      DUF234  13 elgeseevlekikeelneyvgkvFEelvrelllelnkagklpfrftkvGrwWkkeeeiDivalde 77 
                  ++e ++ +++ k+++  y+gk+++el +++ ++++++++ p++ ++    W+++eei+++ l  
  CCD22506.1 154 RNEE-QMDWDAKKDRWFGYTGKEYNELLENWETKKKNNTQEPTDKENEDDMWDTDEEIELMQLGL 217
                 4433.4556777888899***************999999*********************99865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.38
      DUF234  33 gkvFEelvrelllelnkagklpfr 56 
                  +++E+l++e ++++ ++++l+ r
  CCD22506.1 328 PTKYEQLMKEKTKQNLEQEELQRR 351
                 468999999999999998888765 PP

>> RPA_interact_N  Replication protein A interacting N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.5   0.00086       3.1      14      24 ..     112     122 ..     112     125 .. 0.92
   2 ?    4.1   0.1      0.01        37      17      34 ..     235     252 ..     233     254 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00086
  RPA_interact_N  14 KetLRerCleR 24 
                     K+ LR++CleR
      CCD22506.1 112 KDHLRKDCLER 122
                     99********9 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.01
  RPA_interact_N  17 LRerCleRlresRsqLLw 34 
                     L+ r   Rlre+R + L+
      CCD22506.1 235 LKHRTAVRLREDRAAYLN 252
                     5556666*******9998 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   9.7e-05      0.35       8      37 ..      96     127 ..      92     136 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.7e-05
                 TTSTTSCEEEETTTSCEEE..TTTSSSTHSHH CS
         PHD   8 ksdeeeelvqCdgCkrwfH..qkClkpplese 37 
                 +++++e+l++C++C+   H  ++Cl+ p++ +
  CCD22506.1  96 NTKHQEKLLYCENCGAKDHlrKDCLERPKKLK 127
                 56789**********99994458999887644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2069  (0.1154); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2778.85
//
Query:       CCD22507.1  [L=285]
Description: hypothetical protein NDAI_0A03500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-67  227.0  10.6    2.7e-67  226.7  10.6    1.1  1  Nop52     Nucleolar protein,Nop52


Domain annotation for each model (and alignments):
>> Nop52  Nucleolar protein,Nop52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.7  10.6   1.5e-71   2.7e-67       2     215 ..       5     247 ..       4     248 .. 0.92

  Alignments for each domain:
  == domain 1  score: 226.7 bits;  conditional E-value: 1.5e-71
       Nop52   2 klakkLasndkktRdkalksLrkfLskkk.kkklselellkLwkGLFycmWmsDkplvQqelaeeLaelv.........kslksk.........eaalk 81 
                 +++k+L+sn++ +R+k+l++L+k+L ++k  k++++++++kLwkGL+++mW+sD+p++Qq+la++L+el+         +    +         ea++k
  CCD22507.1   5 TFVKQLSSNNRVVREKSLEALEKVLVTEKcLKTFKQSQFNKLWKGLYFAMWFSDRPRPQQRLANKLGELYqlyfnkkdnE----NykddlsindEAFVK 99 
                 79**************************98678*************************************6555555550....0555555555***** PP

       Nop52  82 FlkafwetmsreWkgiDklRlDKfllLvRrvlreslkllkkeewdkelveeyle.vlketplssedkkvpnglayhladiyldelekvleseleeeeee 179
                 F kafw++++ eW +iD++R+DK+llLvRrv+ +++k+lk +ew+++lv+e++e vlk+ pl s+++kv++g+++h++di lde+e++++++++e e++
  CCD22507.1 100 FSKAFWKVLCLEWYNIDRFRMDKYLLLVRRVFFSQIKYLKLREWNEKLVNEFIEtVLKDLPL-SGSPKVYSGIPFHIIDIVLDEWERLFTEKNDEIEDN 197
                 **************************************************************.69**********************999999988888 PP

       Nop52 180 edee.............evplekllepfvkllkks.kskallkkikeevl 215
                 edee             + pl++++++f++l+++  +sk l++kike++l
  CCD22507.1 198 EDEEeekqetelielvkNSPLKDFISIFQDLASNMtNSKILRDKIKEDLL 247
                 8877899*************************998799*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1146  (0.0639188); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2051.82
//
Query:       CCD22508.1  [L=461]
Description: hypothetical protein NDAI_0A03510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3413.12
//
Query:       CCD22509.1  [L=204]
Description: hypothetical protein NDAI_0A03520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-45  154.6   8.5      2e-45  154.3   8.5    1.1  1  DUF846    Eukaryotic protein of unknown function (DUF846)


Domain annotation for each model (and alignments):
>> DUF846  Eukaryotic protein of unknown function (DUF846)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.3   8.5   1.1e-49     2e-45       1     139 []      15     157 ..      15     157 .. 0.95

  Alignments for each domain:
  == domain 1  score: 154.3 bits;  conditional E-value: 1.1e-49
      DUF846   1 shpvallfhllfklaailvylfgslfsnsfilkfvvlilllaldfwvvknisGrlLvgLrwwnevdedgeskwvFesrdekrkv.....nkidsklFWl 94 
                 shp++l +hl  k+a+i++y++gslf   f+++f++++llla+df+++knisGr+Lv+Lrww++ + +++++++Fes +e  ++     n+idsklFW+
  CCD22509.1  15 SHPILLGLHLSAKAAPIVFYIVGSLFL-GFTAQFICIVLLLAFDFYLTKNISGRKLVQLRWWYDSTLTNKETFKFESFKEYAPSlgppiNPIDSKLFWW 112
                 69**********************995.9************************************************944444366666********** PP

      DUF846  95 llyvtpllwvvllilailslkllwlllviialvlsltnlygftkC 139
                 ++y+tp++w+v++il++l+lkl++l+lvi+a++l+++n+ygf  C
  CCD22509.1 113 SMYLTPVVWIVFGILCLLRLKLFYLILVIVAIMLTGWNTYGFRCC 157
                 ******************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1482.77
//
Query:       CCD22510.1  [L=392]
Description: hypothetical protein NDAI_0A03530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-58  197.9  12.1    9.2e-34  117.2   0.1    3.4  4  Methyltransf_8   Hypothetical methyltransferase
    2.9e-06   27.9   0.0      1e-05   26.1   0.0    2.0  1  Methyltransf_11  Methyltransferase domain
     0.0034   18.0   0.0      0.012   16.3   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
       0.38   10.8   2.6        0.7    9.9   2.6    1.4  1  CEL_III_C        CEL-III C-terminal


Domain annotation for each model (and alignments):
>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   1.0       2.8   1.2e+04     185     212 ..      11      41 ..       4      47 .. 0.49
   2 !   81.9   0.0   1.3e-26   5.9e-23       2      75 ..     113     186 ..     112     192 .. 0.95
   3 !  117.2   0.1   2.1e-37   9.2e-34      91     199 ..     233     343 ..     226     357 .. 0.90
   4 !    6.7   0.6    0.0013       5.7     185     219 .]     355     392 .]     346     392 .] 0.68

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2.8
                     --STTEEEEEEEE-S...SS-TT---GG--- CS
  Methyltransf_8 185 lsnkqfvlfefkkve...kkgkkrelglklk 212
                     +++++  + e kk +   kk+kk++ + klk
      CCD22510.1  11 IKTDKVAFAENKKKKlqdKKNKKAKANKKLK 41 
                     5555555555555442234444444555555 PP

  == domain 2  score: 81.9 bits;  conditional E-value: 1.3e-26
                     XXXXX-HHHHHHHHHHHHHHHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS- CS
  Methyltransf_8   2 leakikkrldgarfrflneklytgesskavdlfkedpeafdlyhkgfrsqvkkWPenPldviirklkkkkdnlv 75 
                     l++k+  +l g+rfr++ne++yt +s  a dl k++pe+fd yh+gfrsqv+ WPenP+dv++++lk + ++ v
      CCD22510.1 113 LQQKMMAKLTGSRFRWINEQFYTIDSGSALDLVKKQPELFDEYHDGFRSQVQSWPENPIDVFVNQLKARSQKPV 186
                     79*****************************************************************9987655 PP

  == domain 3  score: 117.2 bits;  conditional E-value: 2.1e-37
                     -S-..EEEEESS-SSTTEEES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S..-HHHHHHHHHCTTEEEEEE CS
  Methyltransf_8  91 rekekvrsfdlvavnervvacdlakvPledesvdvavfclslmgtnladflkeanrvlkvGGllkvaevksrfe..svklfaraltklGfevksk 183
                     +++++v+sfdl+ vn+r+++ d+++vPl d+s  +++fclslmgtn+ df+kea+r+l + G l++ae+ksrf   +++ f+ al+ +Gf  k++
      CCD22510.1 233 KRNHEVHSFDLKKVNDRITVADIKNVPLPDNSCTIVIFCLSLMGTNFLDFIKEAYRILAPRGELWIAEIKSRFAdgKGDEFVTALKLMGFFHKNT 327
                     6789**********************************************************************444569*************** PP

                     E--STTEEEEEEEE-S CS
  Methyltransf_8 184 dlsnkqfvlfefkkve 199
                     d +nk+f+ fef k  
      CCD22510.1 328 DDENKMFTRFEFFKPA 343
                     ***********98865 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0013
                     --STTEEEEEEEE-S..SS-TT---.GG--------XX CS
  Methyltransf_8 185 lsnkqfvlfefkkve..kkgkkrel.glklkpclykkr 219
                     +  ++f+ +e +k e  kk +k    +  lkpc+yk+r
      CCD22510.1 355 ERRQKFIEVETEKEEleKKRQKTAEgKWLLKPCIYKRR 392
                     55678888888887743333333333789********9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.3e-09     1e-05      43      95 ..     241     297 ..     217     298 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.3e-09
                      -.....EEEETTEECCCTSS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  43 l.....kvefvvadaeklpfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllv 95 
                      +     + ++ vad++++p++dns+ +v+   +l+   +  +++ke++R+L p G l 
       CCD22510.1 241 FdlkkvNDRITVADIKNVPLPDNSCTIVIFCLSLMGT-NFLDFIKEAYRILAPRGELW 297
                      13555566789*************************9.69***************987 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.6e-06     0.012      44      97 .]     244     294 ..     227     294 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.6e-06
                      TTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  44 eglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      +++n ++ ++d++++p++d+s+ +v+ +  l+++   +  +++ke++r+L p G
       CCD22510.1 244 KKVNDRITVADIKNVPLPDNSCTIVIFC--LSLMG-TNFLDFIKEAYRILAPRG 294
                      455778999*****************95..55555.56889***********98 PP

>> CEL_III_C  CEL-III C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.6   0.00016       0.7      25     120 ..      39     135 ..      21     147 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
   CEL_III_C  25 qkdesktkestvlksvsesieegfeflgksekasvsaeasvavadsvtks.lsksvtttitatcakkdkekvalyQwslkgqeegeeevsvddenfi 120
                 + +++ +k+ t  +s+++  + +  ++g++++ s+s++ s+++ ++ tk   ++  + +i++t ++k ++k++  Q ++ ++ +g     ++++ ++
  CCD22510.1  39 KLKDNAKKKATSANSIVVNPDVKMRKFGEKKDQSLSPSSSTEIDKTSTKRnHEEIAKEDIDSTIQSKPQRKLTPLQQKMMAKLTGSRFRWINEQFYT 135
                 55677778889999999999999999******************9999650556678899999**********999999999999988888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2519  (0.140499); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 2821.55
//
Query:       CCD22511.1  [L=520]
Description: hypothetical protein NDAI_0A03540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-35  121.4  14.0    1.9e-35  121.4  14.0    1.9  2  Stn1_C    Telomere capping C-terminal wHTH
    3.4e-34  117.9   0.6    3.4e-34  117.9   0.6    2.1  2  Stn1      Telomere regulation protein Stn1
  ------ inclusion threshold ------
      0.093   13.2   0.8       0.36   11.3   0.4    2.1  2  ILEI      Interleukin-like EMT inducer


Domain annotation for each model (and alignments):
>> Stn1_C  Telomere capping C-terminal wHTH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.5   8.8e+03      52      71 ..     361     381 ..     358     399 .. 0.51
   2 !  121.4  14.0   3.2e-39   1.9e-35       1     119 [.     401     519 ..     401     520 .] 0.99

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.5
      Stn1_C  52 likLqcltgt.idykqirekl 71 
                 li L ++++t id+ qi e+ 
  CCD22511.1 361 LITLPVNSITmIDLYQISEFK 381
                 555555555435555555532 PP

  == domain 2  score: 121.4 bits;  conditional E-value: 3.2e-39
      Stn1_C   1 ksleelkselfadllakLaklglisledasnvidlkpLknlkeYiqkrisvlikLqcltgtidykqireklklpelskkliidvfkeslrkiakqspel 99 
                 ks+ee+kse f +++++L+++++++l++++nvidl+ Lk++++Y+++r+++ ikLq l+++idyk+i++kl+l+++++++ii++fke+++ ++++++++
  CCD22511.1 401 KSFEEIKSEQFINYIKSLVASTVVELTSNDNVIDLSILKKVSKYCNERLNISIKLQNLSISIDYKYIKQKLSLKQFKNMMIIEIFKENIKIFTMNTSSI 499
                 79************************************************************************************************* PP

      Stn1_C 100 lksWwidlkseessivhleY 119
                 +k+W+idlk+e+ +iv+leY
  CCD22511.1 500 IKNWYIDLKNEKIAIVYLEY 519
                 ******************** PP

>> Stn1  Telomere regulation protein Stn1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.6   5.7e-38   3.4e-34       9     235 ..      17     263 ..       2     275 .. 0.85
   2 ?    0.6   0.4     0.037   2.2e+02       9      83 ..     390     468 ..     380     472 .. 0.71

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 5.7e-38
                 XXXXXXX----...........B--HHHHTT............-B---------EEETTEEE-EEEEEEEEEEEEEE....TTEEEEEEE-SS...... CS
        Stn1   9 sffrptllrlsesydka.t...pllirdihkrldsSrrv.gneisiyaslirdilfylnrpirrikvvGlvvgvkwklikgedkavlkiDDcs...... 96 
                  f+ p l + +e+y +  t   pll  d++k++ +S+ +  + ++ ++    + lfy n pi +ikv+G v   + k++k++d+++lk+DDc+      
  CCD22511.1  17 CFYLPLLFKHNEYYIQSlTdpiPLLLYDLKKCMFKSKLLfEHYYKTFNLESSKCLFYENTPINKIKVIGRVFDSHTKWVKNVDYIFLKLDDCTpnfdnk 115
                 589999999999996542344699************9752677889999999****************************************9555333 PP

                 .S-EEEEEEEGGG-HHH.HH.HHTT-TT-EEEEEEEEESSS-EEEEEEEEEE-STTHHHHHHHHHHHHHHHHHHHHHHH-XXX................ CS
        Stn1  97 .dkllkckcsksqllsl.gi.eivaliGstvavfGklnreeveleveflelvkglesEiefWrkamllrkeLakpweldpeklnelyegedeveeee.. 190
                  d+ lk  cs++    +  i  + +l G++++++G+   +++e++++ l  v++++sE+efW+ am++r  L  pw + p++l e y   +e+   +  
  CCD22511.1 116 rDHDLKFTCSVESVCNMlQIsTLPDLTGQRIQIIGYAKLQYNEFHIKDLQFVDTMVSELEFWSLAMHYRSWLMEPWTIAPDIL-EPYLLTQEASLVHgd 213
                 333799***99866554144245678*********************************************************.777777776544445 PP

                 .......XXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Stn1 191 .......stPkkenniqnkaasieqLqkiksvedklevaspytareesiyvk 235
                        stP      ++k  +ie+Lq  ++ +++le+ spy   ++s+ ++
  CCD22511.1 214 eddvinnSTPIRRVG-NKKITYIEKLQD-ENTRNELEIISPYSSANSSVNLN 263
                 678888888887776.67889*******.*****************998776 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.037
                 XXXXXXX----........B--HHHHTT..............-B---------EEETTEEE-.EEEEEEEEEEEEEE... CS
        Stn1   9 sffrptllrlsesydkat.pllirdihkrldsSrrv...gneisiyaslirdilfylnrpir.rikvvGlvvgvkwklik 83 
                  +f++++l   +s+++++   +i  i++ ++s   v   +n+  i  s+++++  y n  +  +ik++ l + +++k+ik
  CCD22511.1 390 FEFQKQSLSNIKSFEEIKsEQFINYIKSLVAST-VVeltSNDNVIDLSILKKVSKYCNERLNiSIKLQNLSISIDYKYIK 468
                 356666777778999999899999999955544.3322256667788888888888888774489999999999998887 PP

>> ILEI  Interleukin-like EMT inducer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.6   3.6e+03      29      52 ..     355     378 ..     345     393 .. 0.74
   2 ?   11.3   0.4   6.1e-05      0.36       7      52 ..     389     432 ..     385     459 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.6
        ILEI  29 krlveflksipdgsiVlvavkdea 52 
                 + l ++l ++p +si ++  ++  
  CCD22511.1 355 SFLLRYLITLPVNSITMIDLYQIS 378
                 478899999999999998776655 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 6.1e-05
        ILEI   7 vvdektgkvldsksFdtyeeeskrlveflksipdgsiVlvavkdea 52 
                 +++++++++ ++ksF+    +s+++++++ks+ + ++V ++++d+ 
  CCD22511.1 389 IFEFQKQSLSNIKSFEE--IKSEQFINYIKSLVASTVVELTSNDNV 432
                 66777888999999999..899*********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1116  (0.0622455); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3513.24
//
Query:       CCD22512.1  [L=840]
Description: hypothetical protein NDAI_0A03550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-67  227.1   1.8    2.9e-67  225.7   1.8    1.8  1  DDE_1        DDE superfamily endonuclease
    6.3e-15   55.0   0.9    2.2e-14   53.2   0.2    2.3  2  HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
      3e-05   23.6   0.1    7.7e-05   22.3   0.1    1.7  1  HTH_ABP1_N   Fission yeast centromere protein N-terminal doma
  ------ inclusion threshold ------
       0.17   12.5   0.0        1.1    9.9   0.1    2.2  2  HTH_32       Homeodomain-like domain


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.7   1.8   6.4e-71   2.9e-67       2     175 .]     200     393 ..     199     393 .. 0.99

  Alignments for each domain:
  == domain 1  score: 225.7 bits;  conditional E-value: 6.4e-71
       DDE_1   2 erltvllcanaagsekLkplvigkaksprafkn...............gektkkkldveyksnrkawltssifeeWLkvfdkrleaekrkilLlldssr 85 
                 e++tv+lc+n++gsekLkplv+gk+ks+r+f+n               gek++ +++++y+snrk+wlts++f++WL+++dkrl+a++rki+++ld+s+
  CCD22512.1 200 EVATVMLCSNLDGSEKLKPLVVGKYKSYRSFRNyfpheptdqgsqallGEKMATRFGISYHSNRKSWLTSNMFHNWLVRWDKRLVADNRKIWIVLDDSC 298
                 789************************************************************************************************ PP

       DDE_1  86 shetvelleselqniklvflPassasllqPldqgvvselKarYrrqllqalleeqnrlsk..........eqkkltlldalkfikkAwnavsketiksa 174
                 sh++++    +lqni+lv+  +ss+s+++P+++gv++e+K+rYr+q+++al+e+q++ +k          eq+klt+++a+kfikkAw++++ + ik++
  CCD22512.1 299 SHRIINA---HLQNIHLVY--TSSNSRFLPFNWGVLDEFKTRYRIQQYKALIELQKQFEKnsnekicinfEQSKLTMSNAFKFIKKAWDDIPGDVIKAN 392
                 *******...*********..*************************************999************************************** PP

       DDE_1 175 f 175
                 +
  CCD22512.1 393 W 393
                 9 PP

>> HTH_Tnp_Tc5  Tc5 transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.2   4.8e-18   2.2e-14       4      63 ..      75     135 ..      72     138 .. 0.93
   2 ?   -1.9   0.0      0.76   3.4e+03      53      63 ..     329     339 ..     325     342 .. 0.86

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 4.8e-18
                  HHHHHHHHHHHHC-CT---SCHHHHHHHHHHH.HHSSSCT-TT-S--CHHHHHHHHHTS-- CS
  HTH_Tnp_Tc5   4 lEkaLleWirqlrergipitgelirekAqela.slaadlgepdfkaSkgWldrFkkRhglk 63 
                  + k L+eWi+q  ++gipit ++i+++Aq ++ + +++  e++ ++S++W+ +F+ +++++
   CCD22512.1  75 VRKILQEWISQSLWNGIPITSPIIQDTAQSVWhRIPSEFREGNGSFSYKWISNFLAKMDVN 135
                  6899*****************************9999*******************99764 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.76
                  HHHHHHHTS-- CS
  HTH_Tnp_Tc5  53 ldrFkkRhglk 63 
                  ld Fk R+++ 
   CCD22512.1 329 LDEFKTRYRIQ 339
                  799*****996 PP

>> HTH_ABP1_N  Fission yeast centromere protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   1.7e-08   7.7e-05       5      56 ..       2      54 ..       1      57 [. 0.85

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.7e-08
  HTH_ABP1_N  5 iskeqkkaLRawafqqnprpsqkaliaWFeqeyg..qkisqstvSeiLSskYay 56
                +s eq+  +  +a + +p+++q +l++W++++++  +  sq+t+S+ L +k  y
  CCD22512.1  2 LSIEQRYNICLMA-ERHPKWTQLELAKWAYETFQlpKIPSQGTISRLLAKKSTY 54
                5778999998898.556****************955668*********998655 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00025       1.1      31      73 .]       4      48 ..       2      48 .. 0.84
   2 ?   -1.1   0.0      0.67     3e+03       3      43 ..     122     164 ..     121     203 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00025
      HTH_32 31 devrariiallreeprWsprqlaarlaeregvk..vShstvyriL 73
                 e+r  i+ +++++p+W+  +la++  e ++    +S+ t+ r+L
  CCD22512.1  4 IEQRYNICLMAERHPKWTQLELAKWAYETFQLPkiPSQGTISRLL 48
                588999999**99*************777733357********98 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.67
      HTH_32   3 srwlkRynee...GlegLkdrprrgrprklsdevrariiallre 43 
                 ++w+  + +     +++L+++  + +p+ ++ e+r  +++   +
  CCD22512.1 122 YKWISNFLAKmdvNISALDEE-LPKAPKIWTFEERNVLKEYFSK 164
                 677777776633335555544.5667889999999999888744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1093  (0.0609627); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5956.73
//
Query:       CCD22513.1  [L=998]
Description: hypothetical protein NDAI_0A03560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-29  102.6   0.5    1.6e-29  102.6   0.5    2.9  2  Clathrin     Region in Clathrin and VPS
    5.4e-05   23.4   0.0    0.00019   21.7   0.0    2.0  1  Vps39_1      Vacuolar sorting protein 39 domain 1
     0.0031   18.3   0.4      0.014   16.3   0.4    2.3  1  WD40         WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.9      0.13   7.7e+02      44     121 ..     684     707 ..     593     725 .. 0.48
   2 !  102.6   0.5   2.7e-33   1.6e-29       3     141 ..     771     911 ..     769     913 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSSXSSSSHCSCHHHHTTTT CS
    Clathrin  44 lqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykkinefkkaisllkklkdfddaieyaak 121
                 + +a++ ly+ +++++++  +                                                       +k
  CCD22513.1 684 YRNAVILLYLHEQRYSKAIIH------------------------------------------------------MIK 707
                 233333333333333333222......................................................222 PP

  == domain 2  score: 102.6 bits;  conditional E-value: 2.7e-33
                 CCCTTS-CCCCHHHHHC.TT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-S.SHHHHHHHHHTTXTH CS
    Clathrin   3 eltdpidlsrvvklfee.aglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekad.lyeeavilykkinef 99 
                 +++++i++s+++k f++  +l + l+  L+ + k d++  ++++t+l+ ly+k d+  +l+++lk+ +nyd+ekv++lc+k++ ly+e+++l+ ki+e+
  CCD22513.1 771 SNRNRISISKLIKRFQKfPNLSRILFVILRRLSKVDPQLITQYETELIGLYIKFDK-PNLLQVLKTKSNYDIEKVIELCSKEEnLYNELIFLWGKIGET 868
                 689**************779999999*****************************8.**********************65555*************** PP

                 SSHSSX.SSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSH CS
    Clathrin 100 kkaisl.lkklkdfddaieyaakvsnpelwekllealldkkpf 141
                 kka+sl +++lkd++ ai++++ + ++elwe++++++ +k+ f
  CCD22513.1 869 KKALSLiIDELKDPNLAIDFVKSWGDSELWEFMIQYSWNKPAF 911
                 *****99*****************************9998876 PP

>> Vps39_1  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.2e-08   0.00019       3      68 ..     815     881 ..     813     920 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 3.2e-08
     Vps39_1   3 TaLlkvYlktkpklvgpLlrle.NaCdlkdveeiLkkekkykeLidlYygkklheeALeLlkelade 68 
                 T L+ +Y+k ++  ++++l+++ N+   k++e + k+e+ y+eLi l+ + ++ ++AL L+++  ++
  CCD22513.1 815 TELIGLYIKFDKPNLLQVLKTKsNYDIEKVIELCSKEENLYNELIFLWGKIGETKKALSLIIDELKD 881
                 8999*****************9566666666778899999********************9876663 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.4   2.3e-06     0.014       3      36 ..     135     167 ..     133     167 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.3e-06
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 ++rtl+ H ss+ s+  + dg+++++Gs Dgtv i
  CCD22513.1 135 TIRTLKCHrSSILSI--DTDGSYFITGSIDGTVVI 167
                 689******99****..***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (998 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1434  (0.0799822); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.97u 0.32s 00:00:01.29 Elapsed: 00:00:00.49
# Mc/sec: 6152.03
//
Query:       CCD22514.1  [L=72]
Description: hypothetical protein NDAI_0A03570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-25   87.8   0.1    3.9e-25   87.6   0.1    1.0  1  Tfb5      Transcription factor TFIIH complex subunit Tfb5


Domain annotation for each model (and alignments):
>> Tfb5  Transcription factor TFIIH complex subunit Tfb5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.1   2.2e-29   3.9e-25       1      67 [.       1      65 [.       1      66 [. 0.97

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 2.2e-29
        Tfb5  1 MvkaikGvLveCDpaikqlilkldeqepsqkfiiedLDethlfvkeevveelkkeleellekntyep 67
                M +a +G L++CDp+ik+li+++d+q+  +++i+e+LD+thl+v++++v+++k el++ll+kn y+p
  CCD22514.1  1 MARARRGALLQCDPSIKALIVQIDAQR--SDIILEELDDTHLLVDPNKVAFIKFELNRLLSKNIYNP 65
                99************************5..8***********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       335  (0.0186848); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 508.66
//
Query:       CCD22515.1  [L=124]
Description: hypothetical protein NDAI_0A03580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-10   39.4   0.2    6.7e-10   39.4   0.2    1.5  2  Pet100        Pet100
  ------ inclusion threshold ------
      0.067   13.4   0.0      0.096   12.9   0.0    1.2  1  ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transpor


Domain annotation for each model (and alignments):
>> Pet100  Pet100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.2   7.4e-14   6.7e-10       4      68 ..      14      83 ..      12      90 .. 0.87
   2 ?   -3.4   0.1       1.7   1.5e+04      52      55 ..     104     107 ..      95     114 .. 0.43

  Alignments for each domain:
  == domain 1  score: 39.4 bits;  conditional E-value: 7.4e-14
      Pet100  4 wnLEvfkfglYvffPvgvfyyfnqpeyfeefvvktkreffp........peeke.lreeleelkeerlakrekk 68
                 +LE+f+f++ ++ P+gv+yy ++    ++  v+    f+p        p+e   +++el+++k+erl+kr k 
  CCD22515.1 14 AQLEIFRFSFCLLAPIGVMYYIGTD-TDKKLNVP---GFWPdpetlnkiPKEPYeIKAELARMKKERLEKRLKL 83
                59**********************9.34446666...8***********999999**************98664 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.7
      Pet100  52 eele 55 
                 +el+
  CCD22515.1 104 NELD 107
                 2222 PP

>> ATPase_gene1  Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05     0.096       4      31 ..      18      45 ..      16      49 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
  ATPase_gene1  4 asqiGielvapillggllGywLDkkfgt 31
                  ++++++ l+api++++++G   Dkk++ 
    CCD22515.1 18 IFRFSFCLLAPIGVMYYIGTDTDKKLNV 45
                  678999******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1496  (0.0834402); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 955.87
//
Query:       CCD22516.1  [L=302]
Description: hypothetical protein NDAI_0A03590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1037  (0.0578393); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2174.62
//
Query:       CCD22517.1  [L=310]
Description: hypothetical protein NDAI_0A03600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.5   10.8   3.6        5.5    7.4   0.0    2.7  3  DUF732    Protein of unknown function (DUF732)


Domain annotation for each model (and alignments):
>> DUF732  Protein of unknown function (DUF732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00031       5.5      65      92 ..     122     148 ..      87     151 .. 0.68
   2 ?    3.7   0.3    0.0044        79      73      92 ..     183     202 ..     170     205 .. 0.78
   3 ?   -2.8   0.0      0.49   8.8e+03      58      74 ..     239     257 ..     235     289 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00031
      DUF732  65 evkndnsglspeqaaqfvgaAvsayCPe 92 
                 +++n +   ++ ++++ v+ A+++yCPe
  CCD22517.1 122 SIHN-SLPTTTWTTETEVVTAITTYCPE 148
                 4444.333467899999**********8 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0044
      DUF732  73 lspeqaaqfvgaAvsayCPe 92 
                  ++ ++++ v+ A ++yCPe
  CCD22517.1 183 STAWTTETEVVTAFTTYCPE 202
                 45677888899********8 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.49
      DUF732  58 saeavvaevknd..nsgls 74 
                 +++a v+++k++   s+ +
  CCD22517.1 239 NPSATVTTTKSTptASSHT 257
                 5555555555543222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2287.93
//
Query:       CCD22518.1  [L=167]
Description: hypothetical protein NDAI_0A03610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1279.82
//
Query:       CCD22519.1  [L=566]
Description: hypothetical protein NDAI_0A03620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-08   33.4   1.9    3.1e-08   33.3   0.1    2.0  2  ATPase    KaiC
    1.8e-06   27.4   0.1    6.5e-06   25.6   0.1    1.9  1  Rad51     Rad51
     0.0093   15.9   0.4      0.021   14.8   0.4    1.5  1  ATPase_2  ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
      0.012   14.9   0.0      0.021   14.1   0.0    1.5  1  DnaB_C    DnaB-like helicase C terminal domain
      0.039   13.9   0.1       0.16   11.9   0.0    2.1  2  Bys1      Blastomyces yeast-phase-specific protein
       0.08   12.5   0.0       0.25   10.9   0.0    1.7  1  AAA_25    AAA domain
       0.21   11.8   1.0          3    8.1   1.0    2.4  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.1   1.2e-11   3.1e-08       2      40 ..      19      57 ..      18      68 .. 0.91
   2 ?   -2.7   0.2       1.2     3e+03      74     127 ..     118     166 ..     100     187 .. 0.52

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.2e-11
      ATPase  2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFl 40
                ++gI glD++l+gG+ +++++ i G+pG GKt f+ q +
  CCD22519.1 19 SSGISGLDDLLNGGFQRRSIYEIFGTPGIGKTRFGIQLV 57
                68*********************************9965 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
      ATPase  74 lekleeegklaiidasesaeesaeekdkedleelieelaeaikeikakrvviDs 127
                 ++k+ e   ++  ++s++ +e+     ++d e   ++ ++ ik+ + + ++iD 
  CCD22519.1 118 ITKYTELLYFFRRQLSKKIKEE-----TKDDEDHDDNDTSHIKKRGYELIIIDG 166
                 4444444333333444443332.....223333333334444444444455544 PP

>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   2.5e-09   6.5e-06      17      81 ..      16      85 ..       5     243 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.5e-09
                -EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHH..HHTTS-TTTS-...-SSEEEEEESSS CS
       Rad51 17 lqlttGskklDelLgGGietgsiteifGefrsGktqlchtlc..vtvqlplelgG...gegkavyidteg 81
                l l+ G + lD+lL+GG++  si eifG  + Gkt +  +l        + +++G   ge+ +++i+t  
  CCD22519.1 16 LPLSSGISGLDDLLNGGFQRRSIYEIFGTPGIGKTRFGIQLVdnFLSSDDDNINGqdnGEKSVLWIETHR 85
                56999***********************************952222222223334222466777777765 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4     8e-06     0.021      18     142 ..      34     179 ..      22     216 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 8e-06
    ATPase_2  18 epneiyfiYGpegsGKtaLlkeiienledkdk...........yviyyialreesiskldefie.........eeeekkklekal.............. 82 
                 ++++iy i+G  g+GKt++  +++ n +++d+            v+++   r +s + +++ i+         +          +              
  CCD22519.1  34 QRRSIYEIFGTPGIGKTRFGIQLVDNFLSSDDdningqdngekSVLWIETHRPISDNFISRNINhnnhtdtkqT----------Tqdenifkiritkyt 122
                 5689***********************88888567777777766777777776666666666666655433322..........123344566678888 PP

    ATPase_2  83 .giavpkaeleeilkeksklvfkaielllekikkkgkkiiiiiDelqklidlglngaellv 142
                  +  + + +l + +ke++k+ +   ++    ikk+g ++ iiiD + ++i+   ++ + l+
  CCD22519.1 123 eLLYFFRRQLSKKIKEETKDDEDHDDNDTSHIKKRGYEL-IIIDGFSQIIN---DHIQILL 179
                 877777888888888888888888999999999999986.56899999993...3333333 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   8.3e-06     0.021       2      46 ..      18      63 ..      17     189 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.3e-06
                BXSSTHHHHHHC.TSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHHC CS
                xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  2 lstgfkdLDklt.sGlqkgdliiiAarpsmGktalalniaenaavk 46
                ls+g + LD+l+ +G+q+  ++ i + p++Gkt + ++++ n   +
  CCD22519.1 18 LSSGISGLDDLLnGGFQRRSIYEIFGTPGIGKTRFGIQLVDNFLSS 63
                6899999*9887257*************************998763 PP

>> Bys1  Blastomyces yeast-phase-specific protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.5   3.8e+03      45      79 ..      79     116 ..      71     121 .. 0.62
   2 ?   11.9   0.0   6.4e-05      0.16      94     138 ..     390     434 ..     358     446 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.5
        Bys1  45 yynekyrggsgdgvsltlsh...tegrdssnsettfry 79 
                  + e +r+ s + +s  ++h   t+ +++++ e  f+ 
  CCD22519.1  79 LWIETHRPISDNFISRNINHnnhTDTKQTTQDENIFKI 116
                 56677888888888888765111555555556666655 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 6.4e-05
        Bys1  94 nsggnpfeghkltlkssddrcpriewpegiptgvssgscgssenl 138
                 n   +p +gh  tlk+s ++c +  + e   t vs g  g + n+
  CCD22519.1 390 NNRQEPQQGHIDTLKNSFEKCAKFAYCEVTNTFVSVGNSGNNLNI 434
                 6677899******************************99987765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.8e-05      0.25      22     155 ..      25     171 ..      18     175 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.8e-05
      AAA_25  22 rrwlvkgllpagelallaGapgtGKttlaldlalava..tGkpwlgpvapeqgkVlyvsaEds.edelrrRlravgeal.................rdd 100
                 +++l+ g   + ++  ++G pg GKt + ++l+   +   +++  g   +    Vl++ +  +  d++    ++   ++                 r  
  CCD22519.1  25 LDDLLNGGFQRRSIYEIFGTPGIGKTRFGIQLVDNFLssDDDNING-QDNGEKSVLWIETHRPiSDNFI---SRNINHNnhtdtkqttqdenifkiR-- 117
                 56677776788888899*******************9877777888.3468899999999999544444...3333333233567775555555551.. PP

      AAA_25 101 arllvld.....lagveslpLfakdrggtlltadvdalea.aieevegvrlvviDplsral 155
                             l  + +++L +k++++t+ ++d d+ +  +i++  g++l++iD +s++ 
  CCD22519.1 118 ------ItkyteLLYFFRRQLSKKIKEETKDDEDHDDNDTsHIKK-RGYELIIIDGFSQII 171
                 ......044444222245678899999999777766665515666.88********99875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   1.0    0.0012         3       4     102 ..      35     169 ..      33     207 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0012
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee...........................................erpevvfvtlpsstsskdl.lr 58 
                 +++i  ++G +G+GKT+   +l++++       +                                           ++  ++++ +++ t++  + +r
  CCD22519.1  35 RRSIYEIFGTPGIGKTRFGIQLVDNFLSSD---DdningqdngeksvlwiethrpisdnfisrninhnnhtdtkqttQDENIFKIRITKYTELLYFfRR 130
                 5788899*********98777777774332...123467778777777777777777777777777777777777755555557777777777766566 PP

      AAA_22  59 ellralglelkaerlsseellealeqalraravielliiDEaqh 102
                 +l +++++e+k+     e+  +  + ++++r+  el+iiD +  
  CCD22519.1 131 QLSKKIKEETKD----DEDHDDNDTSHIKKRGY-ELIIIDGFSQ 169
                 666666665555....33333444455555555.6777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1086  (0.0605723); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4087.65
//
Query:       CCD22520.1  [L=920]
Description: hypothetical protein NDAI_0A03630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.5e-149  498.7   0.6   2.3e-149  498.1   0.6    1.3  1  Glyco_transf_20  Glycosyltransferase family 20
    3.4e-80  268.5   0.0    6.9e-80  267.5   0.0    1.5  1  Trehalose_PPase  Trehalose-phosphatase


Domain annotation for each model (and alignments):
>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  498.1   0.6  2.6e-153  2.3e-149      25     473 ..      90     554 ..      15     555 .. 0.89

  Alignments for each domain:
  == domain 1  score: 498.1 bits;  conditional E-value: 2.6e-153
                      EEECCGSSHHHHHCCCHHCCC-EEEEEEECCES-CCC.....HCCCCHHHCCCCC...EEEEEE-HHHHHHHCCCHHHHCHHHHHTT-GG.... CS
  Glyco_transf_20  25 yelkkssgglvsalkglkeetevvwvgwlgvevdesee...akekvskeleekfs...vvpvflsdekveeyyngfsksvLWpllHYklpdsse 112
                       +   ++ g+  +   l++ ++ +  g   ++v+++e+     ++  + l+++++   ++pv+l  ++ ++ +++++++v+Wp +HY l+ ss+
       CCD22520.1  90 SSTAGDDTGVSLSQYHLNK-KQEAAAGADDENVNDEEDplyLTAEQMDGLKQTIQddkIHPVWLL-RRNQSRWRNYAEKVIWPCFHYILNPSSD 181
                      4444445544444444555.444455666666666555455344444445555544449******.88999*********************** PP

                      G----HHHHHHHHHHHHHHHHHHHCC--TT-EEEEESGGGTTHHHHHHHCCTT..SEEEEEE-S----HHHHTTSTTHHHHHHHHTTSSEEEES CS
  Glyco_transf_20 113 ekefersawdaYvkvnklFAdkiveeikdgdliwvhDYhLmllPellRkkled..akigfflHiPFPsseifriLpvreeilegllgadliGFh 204
                      +  +e+ +w +Yvk+n+++A+ i e++++gd+iw+hDY LmllP+llR+k++d  ++ig+f+H+P+Ps+e+fr++++r++il+gl+ga+ i+F+
       CCD22520.1 182 TGDQENDWWYDYVKFNEAYAQDIGEIYQKGDIIWIHDYYLMLLPQLLRMKFNDddLTIGYFHHAPWPSNEYFRCISRRKQILDGLVGANRICFQ 275
                      ***************************************************9989*************************************** PP

                      SHHHHHHHHHHHHHHSS.......EEEECTTE....EEEETTEEEEEEE------HHHHHHHCCSCHHHHHHHHHHHHT.TTSEEEEEEEEC-G CS
  Glyco_transf_20 205 tedyarhFlsccsrllg.......leveskrg....gveykgrkvsvkalpigidverlesalkkesvsekvkelkerfenkkklilgvDrlDy 287
                      ++ +arhF+s+c+rll+            + g    +++++g +  v+alpig+++ +l + + +++++ekv  +ke ++nk k+i+g+DrlD 
       CCD22520.1 276 NDTFARHFVSSCKRLLDstskkttN----EDGadqyQISAYGGDLVVDALPIGVNTRELLEEAFTKDIDEKVLAIKEAYQNK-KIIIGRDRLDT 364
                      *****************77654321....22245579999*****************************************6.*********** PP

                      GG-HHHHHHHHHHHHHH-GGGTTTEEEEEEEEB-ST.TSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEEES---HHHHHHHHHH-SEEEE-- CS
  Glyco_transf_20 288 ikGvkqkllaferfLeeypelrgkvvlvqiavpsre.dveeyqelekeveelvgrINgefgtldytPvvylersldfeeliallaaadvllvts 380
                      ++Gv qkl+afe+fL++ype+r++vvl+q++ p+++ d +++ ++e++v+elv+ IN+++gtld++Pv++++++++++ +++ll++ad++++ts
       CCD22520.1 365 VRGVVQKLRAFETFLAMYPEWRDRVVLIQVSGPTANkDSPQTIRVEQQVNELVNTINSKYGTLDFSPVQHYYMRIPKDVYLSLLRVADLCVITS 458
                      ******************************9988761567799*************************************************** PP

                      SSBSS-CHHHHHHHCSTT......T--EEEEETTBGGGGT-TTTSEEE-TT-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHT-HHHHHHHH CS
  Glyco_transf_20 381 lRdGmnlvakeyvvcqqe......kkgvLiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhdvqsWaesf 468
                      +RdGmn++a+eyv+++++        ++LiLSeF+G++  Lkda i+vNPwd+ +va++i++aL++s +e+   e+kl+++v   ++q+W+e+f
       CCD22520.1 459 VRDGMNTTALEYVTIKSNvsnfqcYGNPLILSEFSGSSTLLKDA-IMVNPWDSVAVAKSINMALNLSRDEKITLETKLWSEVP--TIQNWTEKF 549
                      ***********************99*****************86.*************************************9..9******** PP

                      HHHHH CS
  Glyco_transf_20 469 lselk 473
                      l++lk
       CCD22520.1 550 LTSLK 554
                      **997 PP

>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.5   0.0   7.7e-84   6.9e-80       1     231 [.     598     843 ..     598     845 .. 0.97

  Alignments for each domain:
  == domain 1  score: 267.5 bits;  conditional E-value: 7.7e-84
                      EEETBTTTB---SSGGG--B-TTHHHHHHHHHTTS-..EEEE-SS-HHH..HHHHH---SSEEEEGGGTEEE-TT--EEE-HHHHTTHHHHHHH CS
  Trehalose_PPase   1 flDydGTlspivedpdaavpssellslLkkLasdpknvvaivSGrslke..eellvkvpelglaaeHGaeirspsgedwenqaevedlewlkev 92 
                      ++DydGTl+piv+dp+aa+p+++l+++L kLasdpkn+++i+SGr++k+  +++ +++p+lgl+aeHG+++++ ++e w+n ae+ d++w+ +v
       CCD22520.1 598 LFDYDGTLTPIVQDPAAAIPTARLYNILTKLASDPKNQIWIISGRDQKFlnKWWGSRLPQLGLSAEHGCFVKDVDSEAWTNLAEKVDMSWQLKV 691
                      69******************************************************************************************** PP

                      HHHHHHHHTTSTT-EEEEETTEEEEE-TT--TT....THHHHHHHHHHHHHHH.--EEEE-SSEEEEE-S---HHHHHHHHHHTS---...... CS
  Trehalose_PPase  93 keileektertpGsyiEekkfalsvHyrnadde..elqakelaehlesvltdkpdlevtqgkkvvevrpqgvsKGkaverlleslgsa...... 178
                       + +ee+t+r+pG+++E+kk+al++Hyr++ +e  e +a+el++ l + + d+ dlev++gk++vevrp++v+KG++v+rl+++ +++      
       CCD22520.1 692 GKTMEEFTNRVPGAFVERKKVALTWHYRRVVPElgEYAATELKKELLKYTDDY-DLEVMEGKANVEVRPRFVNKGEIVKRLIWHEHGEpqdmvk 784
                      ************************************************66666.**************************************** PP

                      ........-----EEEEEE-SSTTHHHHTTS-TT...-EEEEE--TTS---EES-SEEESS CS
  Trehalose_PPase 179 ........dseddfvlciGDdrtDedmFsvlrktkesgvsievsavevgskpskakyslds 231
                              d+++dfvlc+GDd+tDedmF++l+    ++ + e ++ +++++ + ++y +++
       CCD22520.1 785 gidqnislDKMPDFVLCLGDDFTDEDMFKQLNCI--EKTWEEKYPEKHNEWGNFGFYPVTV 843
                      **********************************..99999**999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 6645.16
//
Query:       CCD22521.1  [L=203]
Description: hypothetical protein NDAI_0A03640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.037   13.4   0.2       0.05   13.0   0.2    1.1  1  GlnE      Glutamate-ammonia ligase adenylyltransferase


Domain annotation for each model (and alignments):
>> GlnE  Glutamate-ammonia ligase adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   2.8e-06      0.05      27     116 ..      59     151 ..      48     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.8e-06
                 HHCHCHHHTSGGGCCCHHHHHHHHTTTS-TC...HHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        GlnE  27 elldkellaepkeleaaaaelaealaavede...eqliealRqfkreellriavadllglltveevsraLseLaeavieaaldlllrqvvael 116
                   +++++ ++p+   +a++ ++++l ++++    +  +e+ Rq+k + ll i +  +l+++++++ +   +++ +a +++++++ l q ++++
  CCD22521.1  59 TNVNSNVTSNPDVNLNAENSAQKFLNHSNSTiegTVTLEEQRQYKVQLLLHINSVLILRVMHMRNSLTGNTSVNQAQLQEVYQAFLSQYLKRV 151
                 5567778899999999999*******9999997888999************************************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1430  (0.079759); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1685.53
//
Query:       CCD22522.1  [L=532]
Description: hypothetical protein NDAI_0A03650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-11   43.1  14.9    7.4e-10   38.8   4.1    2.6  3  PAP2_3    PAP2 superfamily
    1.3e-07   31.4   9.9    6.9e-05   22.6   0.8    2.9  3  PAP2      PAP2 superfamily


Domain annotation for each model (and alignments):
>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.2       1.2   1.1e+04      26      47 ..      90     111 ..      76     119 .. 0.56
   2 !   38.8   4.1   8.2e-14   7.4e-10      12     144 ..     164     306 ..     161     316 .. 0.77
   3 !   12.0   0.2   1.4e-05      0.13     150     189 ..     446     485 ..     435     486 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.2
      PAP2_3  26 palavilalaYaslhfqvtllv 47 
                 ++++++++  +as+ +++++l 
  CCD22522.1  90 TNISYFTSSLFASIMLIILPLS 111
                 4455555555555444444443 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 8.2e-14
      PAP2_3  12 ldweaalnklllahpalavilala.Yaslhfqvtllvlvllf.lrrrerlreflttlllatllgllvyalfPaagPrlleeagfvdtvaaaslag.... 104
                 +d+  a++   ++ ++ ++++a++ Y +lh+ v++l++v+l+ ++    l+ f ++l l ++ g+++ +l+P+a P++ + +g+ dt++++  +     
  CCD22522.1 164 IDHIFAYQ-SEENFTKTKDLIAWFsYVILHVTVPILTAVYLYvFQPAGTLKCFSFALGLQNIAGVFTHLLIPMASPWFTHLYGINDTEHVNYTQDgfaa 261
                 55555555.5555666677777777******************************************************99999999998877777888 PP

      PAP2_3 105 .....alrdgasravllrgtienglaa..fPSlHvawallvalalwr 144
                      ++ +g+  +  + ++  ++++    PSlH a+a+ +al+l +
  CCD22522.1 262 glirvDTHLGTHLNTKGFHM--SPIVFgaVPSLHSAIAFQCALFLLT 306
                 88755444444433333333..33332459*************9654 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 1.4e-05
      PAP2_3 150 llrvlalllnvlmivatvatgnHYlvDviaGvalalvaia 189
                 + + l+  +++l ++at+++ +HY  D+  Gv++ l +++
  CCD22522.1 446 VPKSLIGSFVILQWWATMYLDHHYRFDLFIGVLYSLTSFT 485
                 5566677788999*********************999987 PP

>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       0.8   7.2e+03      70     100 ..      10      41 ..       6      47 .. 0.45
   2 !   14.2   0.3     3e-06     0.027       3      81 ..     213     314 ..     211     325 .. 0.85
   3 !   22.6   0.8   7.7e-09   6.9e-05      85     131 ..     445     491 ..     422     495 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.8
        PAP2  70 llalllrrkrkkig.lvllalillllavlval 100
                 +++ ++++ ++++  l+l ++++l ++ ++++
  CCD22522.1  10 FIYNVIKSSFNQRHiLSLPLNFILNFLPVIIW 41 
                 44444444444444544444444444444444 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3e-06
        PAP2   3 lalllalalaalltsvlKdlvgrpRPfflaeetkldtqvstletses.......................keakesfPSgHsafafalalllalllrrk 78 
                  ++ +al+l+++  ++   l+    P f++ ++++dt + ++ +  +                         ++   PS Hsa+af +al+l    +++
  CCD22522.1 213 KCFSFALGLQNIAGVFTHLLIPMASPWFTHLYGINDTEHVNYTQDGFaaglirvdthlgthlntkgfhmsPIVFGAVPSLHSAIAFQCALFLLTRSTSL 311
                 678999999999999999999999*************98876665559************99987777755555555***************9988888 PP

        PAP2  79 rkk 81 
                 +++
  CCD22522.1 312 KHR 314
                 776 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 7.7e-09
        PAP2  85 vllalillllavlvalsRlylgvHflsDvlaGlliGialaalayrlv 131
                 ++ + ++  +++l++++ +yl++H+++D+++G+l++++ ++++ ++ 
  CCD22522.1 445 LVPKSLIGSFVILQWWATMYLDHHYRFDLFIGVLYSLTSFTIINWFI 491
                 56667788899****************************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1124  (0.0626917); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3845.26
//
Query:       CCD22523.1  [L=206]
Description: hypothetical protein NDAI_0A03660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.3e-19   68.3   0.0    8.6e-19   67.9   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    3.1e-12   46.5   0.0    4.4e-12   46.1   0.0    1.3  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.3e-06   27.4   0.0      5e-06   26.9   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00064   19.2   0.0    0.00092   18.7   0.0    1.3  1  Acetyltransf_15  Putative acetyl-transferase
  ------ inclusion threshold ------
       0.12   12.4   0.0       0.82    9.8   0.0    2.0  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
       0.17   11.5   0.0       0.24   11.1   0.0    1.2  1  Acetyltransf_8   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   2.9e-22   8.6e-19       3     117 .]      35     172 ..      33     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 2.9e-22
                     HHHHHHHHHTHHHHHHHHHHHHHHHHHSTTC.EEEEEEET............TEEEEEEEEEEEET...............TSTTEEEEEEEEES CS
  Acetyltransf_1   3 dlvellvesffppnedaseeefeesfsleae.gllvaeed............geliGfisllkipd...............ekggvayieslaVs 69 
                     ++v+l+ e  fppne+as e   + f+l+++ +l++++++            ++liG+i ++ki+                e+ + + i+sl++s
      CCD22523.1  35 QVVSLETEG-FPPNERASIEN--IEFRLNTCpELCSGLFIrdfdsstkeiksEKLIGHILGTKINRnekfitlesmglnhdESSDIVGIHSLVIS 126
                     566677766.68899999999..777889999999988888899********************99999999999999999999*********** PP

                     GGGTTSSHHHHHHHHHHHHHHHTTE.SEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  70 peyrgkGlGsaLlealeerareegi.kkivlaveedndaairlYeklGF 117
                     p+y++k+l+++Ll+++++++ ++ + kkiv+  +e+    +++Ye++GF
      CCD22523.1 127 PDYQKKNLATLLLTDYIQKLSNQDVgKKIVIIAHEPL---VPFYERVGF 172
                     ******************9999988899988343555...********9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.5e-15   4.4e-12      53     114 ..     119     180 ..      81     199 .. 0.88

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 1.5e-15
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavgeeqe 114
                       i+ l+++p+y+++ +++ Ll ++++++++++ ++++ + a+   vpfYe++GFk vg++q+
       CCD22523.1 119 GIHSLVISPDYQKKNLATLLLTDYIQKLSNQDVGKKIVIIAHEPLVPFYERVGFKSVGDNQN 180
                      7999****************************999**********************98875 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.7e-09     5e-06      14      75 ..     117     173 ..      81     174 .. 0.67

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.7e-09
                     EEEEEEEEEESTCTEEEEE-GGGTTSSHHHHHHH.H.TT.......SEEEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  14 ivGfialslldaeitrlaVdpeyrgkGiGraLle.a.ae.......kgiile.qlelnaekaikfYeklGFe 75 
                     i            i+ l+++p+y++k +++ Ll+ + ++       k+i ++ +  l     ++fYe+ GF+
      CCD22523.1 117 I----------VGIHSLVISPDYQKKNLATLLLTdYiQKlsnqdvgKKIVIIaHEPL-----VPFYERVGFK 173
                     2..........34667*****************866411333342222323444455.....88*******8 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.1e-07   0.00092      58     105 ..     100     150 ..      37     162 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.1e-07
  Acetyltransf_15  58 kyyslvs...silieknvleiYtlyvsekyrgkGlakklLeeslkelkknY 105
                      k+  l+s   +  ++++++ i +l++s++y++k la  lL + +++l ++ 
       CCD22523.1 100 KFITLESmglNHDESSDIVGIHSLVISPDYQKKNLATLLLTDYIQKLSNQD 150
                      3444444777788999*******************************8864 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.19   5.7e+02       2      34 ..      25      58 ..      24      93 .. 0.77
   2 ?    9.8   0.0   0.00027      0.82      68     126 ..     112     173 ..     106     175 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.19
                    EEEE-GGGHHHHHHHHHHHTT----H...HHHHH CS
  Acetyltransf_9  2 irelteedldevlellkyaFqdeespl.eeirey 34
                    ir+l  ed ++v++l  + F  +e++  e i+++
      CCD22523.1 25 IRPLIIEDCEQVVSLETEGFPPNERASiENIEFR 58
                    788889999********99999988864344444 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00027
                     TEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHT..T--EEEE--.SSHHHHHTTT-E CS
  Acetyltransf_9  68 GktlkaagvtgVavapehrgrgvlskLlaraleemree..gqplsllfP.ssipiYrrfGye 126
                     +++ ++ g+ +    p+++++ +++ Ll+  ++++  +  g++++++     +p+Y+r G++
      CCD22523.1 112 DESSDIVGIHSLVISPDYQKKNLATLLLTDYIQKLSNQdvGKKIVIIAHePLVPFYERVGFK 173
                     56666778999999********************9987555555555433238*******97 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     8e-05      0.24      47     141 ..      86     176 ..      71     179 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8e-05
                     EEEEETTEEEEEEEEEEGGGCGGGGCS---TT-EEEEEEESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  47 liglldgepvgyfeiYwakedelaeyydaepgdrGiHlligeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                     lig + g+ +   e +   e+ ++  +d     +GiH l+  +++ +k+l+t ll+  ++ l +++  +++v+   + +e ++ ++e++Gf+ ++
      CCD22523.1  86 LIGHILGTKINRNEKFITLES-MGLNHDESSDIVGIHSLVISPDYQKKNLATLLLTDYIQKLSNQDVGKKIVI---IAHEPLVPFYERVGFKSVG 176
                     555555555555555544444.566667777889*****************************9998888987...8899999999999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1627.39
//
Query:       CCD22524.1  [L=109]
Description: hypothetical protein NDAI_0A03670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0097   15.7   0.1      0.019   14.8   0.1    1.5  1  MEF2_binding  MEF2 binding


Domain annotation for each model (and alignments):
>> MEF2_binding  MEF2 binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.1e-06     0.019      17      33 ..      15      31 ..      12      33 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-06
  MEF2_binding 17 LKsvILSaQSAAtVkKd 33
                  LK+ ILS  SAA V K 
    CCD22524.1 15 LKNGILSCTSAAKVTKS 31
                  9*************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 895.87
//
Query:       CCD22525.1  [L=1116]
Description: hypothetical protein NDAI_0A03680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-59  199.2   2.3    8.1e-59  199.2   2.3    3.8  2  UCH        Ubiquitin carboxyl-terminal hydrolase
    6.1e-20   72.0   2.7    6.1e-20   72.0   2.7    4.1  3  UCH_1      Ubiquitin carboxyl-terminal hydrolase
    1.4e-07   32.0   0.0    6.9e-07   29.8   0.0    2.2  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -46.3  58.2         3   1.8e+04      39     146 ..     375     563 ..      10     712 .. 0.79
   2 !  199.2   2.3   1.4e-62   8.1e-59       1     257 []     747    1110 ..     747    1110 .. 0.94

  Alignments for each domain:
  == domain 1  score: -46.3 bits;  conditional E-value: 3
                 TCCCCC-.TT.TTS.TTH.............................HHHHHHHHHHHHH..SH-CCEE--HHHHHHHHHHSGG.GTSSSTCE..HHHH CS
                 xxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx..xxxx RF
         UCH  39 srnkkelnesnplgkkge.............................lakalkdlfkell..kskskavsPkklkktlsklaks.fsgykqqD..aqEf 103
                 ++ ++  n++n+++   +                             +  ++   ++e+    ++s+ +sP  l++ +++ +++ f+  +q     +  
  CCD22525.1 375 KKIQDRKNDNNNNN---NtndnmedsiyidgntsglslqhfpkmspsITASMDLSMQEMMssPTSSSPLSP--LMNNFNQQQPRqFHFQQQSPlkRTSS 468
                 22221122111111...11234567899999999*999998888888777777777888877667778888..77777777766576555543224677 PP

                 HHHHHHHHHHHHCC......HCCCHHHHHHCCCTTSHHHHHH-EEEEE..............................................E CS
                 xxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................................x RF
         UCH 104 laflLdqlhedlnr......evaeekwkkhlkrndslitdlfegqlks..............................................k 146
                 l++ L+++ +++n+        ++++ +++l++++s+ t+ f+ + ++                                              +
  CCD22525.1 469 LKNFLSNFTQNSNNnstsntYIKQQQQQQQLQQQTSILTSSFNSSNNNnnsttsnknclpsfiypikntrqsslsnssspshsnsalslslispR 563
                 88999999999999666655334445588888999999999988777777765444444444444444444444444444333333333333330 PP

  == domain 2  score: 199.2 bits;  conditional E-value: 1.4e-62
                  -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH..............SH-CCEE--HHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxx RF
         UCH    1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell..............kskskavsPkklkk 83  
                  +Gl+N+Gn+Cy+n+++QcL+ ++el++++l+++        +  +n +++lg+kg lak+l++l++ ++              ks ++ ++P +++ 
  CCD22525.1  747 IGLQNMGNSCYLNCIIQCLLGTHELTKIFLNYS-------FERYINLNSKLGSKGVLAKNLSKLIHLMYnhstlknngdktkkKSGNNFIKPIQFRM 836 
                  59*****************************53.......33344666789999***********999999999999998877667779******** PP

                  HHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCC........................HCCCHHHHHHCCCTTSHHHHHH-EEEEE........... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxx........... RF
         UCH   84 tlsklaksfsgykqqDaqEflaflLdqlhedlnr........................evaeekwkkhlkrndslitdlfegqlks........... 145 
                  +++++++ f++ +qqD+qEf++flLd lhedln+                          ++ +w++ l++  s+i+dlf+gq+ s           
  CCD22525.1  837 ACGSINNLFKNCSQQDCQEFCQFLLDALHEDLNQcgsnpplkelstkaesmreklslrIASSIEWERYLTTDFSVIVDLFQGQYASrlqcktcihts 933 
                  *********************************************************85577889******************************** PP

                  .....................................................EEEEEEB-SEEEEEEESEEETEEEEE--SEEB--SEEE-GGGBS CS
                  .....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  146 .....................................................klklkrlPeiLiihlkRfsynssksKlntkvefpeeldlssyla 189 
                                                                       kl+++rlP+ LiihlkRf  n +  K+n+ +++p  ldl++++a
  CCD22525.1  934 ttyqpfsvlsvpipkkknlnlldcfkdftkienlevdeqwfcpnckskqpstkKLTITRLPRNLIIHLKRFDNNLN--KNNNLIDYPFILDLTQFWA 1028
                  ************************************************************************9998..***************9999 PP

                  S-BTTS-TCS-B.............EEEEEEEEEESCTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCCCTT.CEEEEEE CS
                  xxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
         UCH  190 eekkkkteekkk.............YeLiavvvHsGslssGHYvayiknekngkWykydDetvkevkeeeevls.sayiLfY 257 
                  ++ + + + + +             Y+L++   H Gsl +GHY+a++++  ++ Wy++dD++  ++k+e+e  s +ay+LfY
  CCD22525.1 1029 DDFDGELPPGVTdelpkrgqippfkYRLYGAALHFGSLYGGHYTAFVNKGIRNGWYYFDDTNYRPIKNEREPISsNAYVLFY 1110
                  9988888777778999999999999***********************999999*************99665556******* PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -11.6  12.8         3   1.8e+04     172     223 ..      65     133 ..       3     341 .. 0.55
   2 ?  -24.0  36.4         3   1.8e+04      92     255 ..     434     550 ..     130     718 .. 0.66
   3 !   72.0   2.7     1e-23   6.1e-20       2     318 ..     748    1089 ..     747    1090 .. 0.74

  Alignments for each domain:
  == domain 1  score: -11.6 bits;  conditional E-value: 3
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxx RF
       UCH_1 172 kkeakvtfasilksslerekttrawCekCkryqpteqrktvk.................nlPpvLalna 223
                 +k+  v+++s l++s++  ++ + + ++ k+   ++   + +                 ++ ++L+ln+
  CCD22525.1  65 RKKFFVDMESSLQKSIDLLQSYKNITKIIKQNNINNNIDNNTttnntiiknyekafiyfKIIHILVLNK 133
                 334444444444444443333333333332222221111111122333333333333333333333333 PP

  == domain 2  score: -24.0 bits;  conditional E-value: 3
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxx RF
       UCH_1  92 kssaislssliqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsne......kkeakvtfasilk 184
                 ++s++ ls+l+ +fn+                                                               +      ++++  +  s lk
  CCD22525.1 434 PTSSSPLSPLMNNFNQQ--------------------------------------------------------------QprqfhfQQQSPLKRTSSLK 470
                 23333333333333322..............................................................03333332222233333444 PP

                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........x RF
       UCH_1 185 sslerekttrawCekCkryqp.teqrktvknlPpvLalnakleeeeelelwktknwlpleiklsldedknl.........e 255
                 ++l++ +++    ++ ++y   ++q++++++  ++L+   + +++++ +  ++kn lp+ i+ + + ++ +         +
  CCD22525.1 471 NFLSNFTQNSNNNSTSNTYIKqQQQQQQLQQQTSILTSSFNSSNNNNNSTTSNKNCLPSFIYPIKNTRQ-SslsnssspsH 550
                 444443333333333333322022233333444444444444333333444444444444444222221.11222222220 PP

  == domain 3  score: 72.0 bits;  conditional E-value: 1e-23
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1    2 GLEnhivnsYlNslLQvlyfipplrnlalshlakeckkehcLlcElgflfdmldkakglncqasnFlralssipeasalglileeeeetekssaisl 98  
                  GL n  + +YlN+++Q+l  + +l+++ l+   ++  + ++ l   g l + l+k   l    s + +  ++++++s  + i+  +           
  CCD22525.1  748 GLQNMGNSCYLNCIIQCLLGTHELTKIFLNYSFERYINLNSKLGSKGVLAKNLSKLIHLMYNHSTLKNNGDKTKKKSGNNFIKPIQ----------- 833 
                  99***********************9999999787777777777778888888888777777777777777777766666653332........... PP

                  xxxx...................xxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   99 ssli...................qsfnrflldqlekelketkkns..............................seeesaieqllgtkaettircl 146 
                                         q+f++flld l+++l++  +n+                              +++ s i +l++ ++ ++++c+
  CCD22525.1  834 ---FrmacgsinnlfkncsqqdcQEFCQFLLDALHEDLNQCGSNPplkelstkaesmreklslriassiewerylTTDFSVIVDLFQGQYASRLQCK 927 
                  ...0222222222223334433478***************99888*****************************9999999999************* PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx....xxxxxxx RF
       UCH_1  147 kCgseksrksstlvldlkyPkpsnekkeakvtfasilkssler...ekttrawCekCkryqpteqrktvknlPpvLalnakle.ee....eelelwk 235 
                  +C ++++  + + vl++  Pk      +++ ++ ++ k + +    e +++ +C++Ck++qp +++ t+++lP+ L++++k++ ++    +      
  CCD22525.1  928 TCIHTSTTYQPFSVLSVPIPK------KKNLNLLDCFKDFTKIenlEVDEQWFCPNCKSKQPSTKKLTITRLPRNLIIHLKRFdNNlnknN------ 1012
                  **************8885542......23455566666555543345667*******************************9844454330...... PP

                  xxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  236 tknwlpleiklsldedknl.......eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWylFNDf 318 
                    n ++  + l+l++                +++ +++ +   ++Y L +   h g s   gh+ ++v+ +          + Wy F+D 
  CCD22525.1 1013 --NLIDYPFILDLTQF--WaddfdgeLPPGVTDELPKRGQIPPFKYRLYGAALHFG-SLYGGHYTAFVNKGI--------RNGWYYFDDT 1089
                  ..33333333322221..1223334322222333334556779*************.888*********433........479******6 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.1e-10   6.9e-07       4     105 ..     230     350 ..     226     351 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.1e-10
   Rhodanese   4 elkellekgkvallDvRppeeYekghI..pgAvnv....skdtlsrakkseapllelpeellel..gidnkktvvvycdgggraaaaaallk....... 87 
                 el +  +++++ l+DvRp+  + + hI  p+ +++     k ++++++ ++++l + p+  ++l   +++ k +++y +++++ + +  llk       
  CCD22525.1 230 ELSRSNDDDDILLIDVRPRLNFVENHIdfPNIICIepisFKPSYTDQDIQQKSLITSPDNEIKLfeMRNQFKFIILYTSDNNDESHLLSLLKillthsf 328
                 666777788888*************************999999999999999999999999999999999*************7777777777777776 PP

   Rhodanese  88 ....klGyknvsvldGGfkawk 105
                        +++ ++l+GG+ +w+
  CCD22525.1 329 akpfDRSLTKFYILKGGILNWN 350
                 5444244589*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2377  (0.132579); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.26s 00:00:01.24 Elapsed: 00:00:00.53
# Mc/sec: 6341.61
//
Query:       CCD22526.1  [L=349]
Description: hypothetical protein NDAI_0A03690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-15   54.7   0.2      2e-14   53.3   0.2    1.8  1  BSD       BSD domain
  ------ inclusion threshold ------
       0.15   12.4   7.2       0.72   10.2   1.6    2.6  2  DUF641    Plant protein of unknown function (DUF641)


Domain annotation for each model (and alignments):
>> BSD  BSD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.2   2.3e-18     2e-14       4      57 ..     191     246 ..     188     247 .. 0.91

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 2.3e-18
         BSD   4 kfkld...kteeiaqsllkedpeLrklynelVPskvseeqFWsrYfyllrahaieee 57 
                 +f+++   +t+ei+++l + d++L+kl+n +VP+ v++++FW++Yf  + ++  ++e
  CCD22526.1 191 NFNIEsdeITKEISTILQN-DKDLEKLMNSIVPHDVDYKTFWQIYFTEREQILARGE 246
                 67766669***********.******************************9998875 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3    0.0036        32      73     109 ..      44      81 ..      23      97 .. 0.72
   2 ?   10.2   1.6   8.1e-05      0.72      39      89 ..     155     205 ..     150     264 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0036
      DUF641  73 eseleaeiqe.qrsllktyeitvkkleaelkakdseie 109
                 +++++  +q  + ++ kt e t +kl+  +++kd+ ie
  CCD22526.1  44 TRKINETMQAiENQVTKTFELTKSKLRDVVEEKDNGIE 81 
                 3333333333667899******************9986 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 8.1e-05
      DUF641  39 iqaADkavvseLkklselkrlyrkkqkkkaseaeeseleaeiqeqrsllkt 89 
                 i +A +   +eLk+ls+ k+ y+kk++k++s+ +e++++ e +e  + + t
  CCD22526.1 155 IVVAGNRTEAELKNLSNDKNIYLKKKEKDNSSDTEHNFNIESDEITKEIST 205
                 6778888889***************99998854444444444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2100  (0.117129); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2613.62
//
Query:       CCD22527.1  [L=255]
Description: hypothetical protein NDAI_0A03700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-52  176.5   3.1    4.3e-51  172.8   3.1    2.2  1  Y_phosphatase2  Tyrosine phosphatase family
     0.0014   18.7   0.0     0.0018   18.3   0.0    1.1  1  Y_phosphatase3  Tyrosine phosphatase family
  ------ inclusion threshold ------
      0.034   14.7   1.6          3    8.4   0.1    2.2  2  YABBY           YABBY protein
      0.068   13.3   0.1       0.17   12.0   0.1    1.6  1  VWA_N2          VWA N-terminal
       0.11   11.3   0.1       0.56    9.0   0.0    1.9  2  YIEGIA          YIEGIA protein
       0.11   12.3   4.5        1.2    8.9   0.1    3.0  3  DSPc            Dual specificity phosphatase, catalytic domai
       0.21   11.7   4.5       0.13   12.4   1.8    1.8  2  NAD_binding_6   Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.8   3.1   1.7e-54   4.3e-51       1     164 [.       3     202 ..       3     203 .. 0.98

  Alignments for each domain:
  == domain 1  score: 172.8 bits;  conditional E-value: 1.7e-54
                     B---TT-EEEETTEEEESS--HHHHHHHHHCT-SEEEE-SSS---HHHHH..HHHHCT-EEEE-------GG....................... CS
  Y_phosphatase2   1 lvpplnFsaveselyrssyprasnfsflksLkLktiislspeeesqdelq..fleeekiklyhiaiesnkee....................... 70 
                     lv+pl Fs+++++lyr+s+pr++n +flk L+L +i+sl+ e+   d+++  f++++ i  +hi ++++k++                       
      CCD22527.1   3 LVTPLLFSTIQPQLYRGSQPREINIPFLKMLNLNYIVSLTSEPLGDDPTMlqFCHSNGISILHIPCQDDKQSdkkkkklkeeednkkseqdkgek 97 
                     699*********************************************9999******************9999********************* PP

                     ............G----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHCCC--HHHHHHHHC---HHHHH CS
  Y_phosphatase2  71 ............lveiksdllkkalklllnkenypvllhckrGkhrtglvigclRklqkWslasilnEyrrFsgskkrivdeefienfdseleve 153
                                  v+i +d++++++k+l++k++yp+++hc++G+++t+lv++clRk+++Ws++silnE+ ++++s  +i++++fienf+se+eve
      CCD22527.1  98 evvvvkvkrkkrHVPIDYDVVERCVKFLVDKRHYPCYIHCSSGELITSLVVACLRKFSYWSTVSILNEFLVYNSS-INIHERNFIENFNSEIEVE 191
                     ***************************************************************************.******************* PP

                     HHH.HTT--S- CS
  Y_phosphatase2 154 kknkklkvlks 164
                     + +  +kv+++
      CCD22527.1 192 NLKLIDKVPWI 202
                     99888887775 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.8e-07    0.0018      28     195 ..      16     208 ..      10     231 .. 0.68

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.8e-07
  Y_phosphatase3  28 lyRsaelsklteadlakLadlgirtviDLRspeEreaeap.......legaryvhlpv...............eeaaeeekeeeeaeetlaelYr 100
                     lyR ++ ++++   +  L+ l+++ ++ L s+   +  +p        +g+ + h+p                e        e+++++   +  +
      CCD22527.1  16 LYRGSQPREIN---IPFLKMLNLNYIVSLTSEPLGD--DPtmlqfchSNGISILHIPCqddkqsdkkkkklkeE--------EDNKKSEQDKGEK 97 
                     77777777776...7888889999999998877633..344466665566688899999998877654433221........1111111111111 PP

  Y_phosphatase3 101 elle.....sak.......kayrkvfealadee..pvlfHCtaGKDRTGvlaalllsllGvdeedivaDYlltneyleelrerlkakleeellae 181
                     e++      + k       + +++ ++ l d++  p+ +HC++G   T +++a l ++   +   i++++l+ n  ++   +++ +++++e++ e
      CCD22527.1  98 EVVVvkvkrK-KrhvpidyDVVERCVKFLVDKRhyPCYIHCSSGELITSLVVACLRKFSYWSTVSILNEFLVYNSSINIHERNFIENFNSEIEVE 191
                     2221233331.1234555699**********446********************************************99999999999997777 PP

  Y_phosphatase3 182 a...leellsvrpeyle 195
                     +   ++++  ++ +yl 
      CCD22527.1 192 NlklIDKVPWISIQYLS 208
                     76674444444444443 PP

>> YABBY  YABBY protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0012         3      76     122 ..      71     116 ..      30     123 .. 0.65
   2 ?    5.7   0.2    0.0079        20       7     110 ..     133     235 ..     127     249 .. 0.48

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0012
       YABBY  76 lassskssekskksalasssseqeeeeeekvvnrppekrqRvPsaYn 122
                  ++s k+++k k ++  +++seq++ e+e vv++   k++ vP  Y+
  CCD22527.1  71 DKQSDKKKKKLK-EEEDNKKSEQDKGEKEVVVVKVKRKKRHVPIDYD 116
                 222333333332.34445555566667779999999*******9886 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0079
       YABBY   7 cyvhCnfCntilavsvPcss...lfkivtvrCGhCtnllsvnlrallla.paaaelqslkkqlel...........ksellskelassskssekskksa 90 
                 cy+hC+  + i    v c +    +++v++         s+n+++  ++  +++e++ ++   +l               ++ +++ss+k++++++   
  CCD22527.1 133 CYIHCSSGELITSLVVACLRkfsYWSTVSILNEFLVYNSSINIHERNFIeNFNSEIEVENL--KLidkvpwisiqyL---SNVDTKSSKKEVDNMS--- 223
                 *******999987777776511145667776666666677777777665333333222222..22334444442220...1222222222222222... PP

       YABBY  91 lasssseqeeeeeekvvnrp 110
                         + +++++v +rp
  CCD22527.1 224 --------HMKTATTVSIRP 235
                 ........112222333333 PP

>> VWA_N2  VWA N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   6.8e-05      0.17      20      45 ..      48      73 ..      43      79 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.8e-05
      VWA_N2 20 edPehCqiChCdGvnltCeaCqkdgk 45
                +dP   q Ch +G+++   +Cq d +
  CCD22527.1 48 DDPTMLQFCHSNGISILHIPCQDDKQ 73
                8********************98865 PP

>> YIEGIA  YIEGIA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00022      0.56      10      44 ..     117     151 ..     111     155 .. 0.90
   2 ?    2.8   0.1     0.017        43     112     203 ..     142     240 ..     141     244 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00022
      YIEGIA  10 tlaRlllLrvdyrqyPtyphgylihlalgfiaaal 44 
                 ++ R++ + vd+r+yP y+h    +l+++++ a+l
  CCD22527.1 117 VVERCVKFLVDKRHYPCYIHCSSGELITSLVVACL 151
                 6889999***************9999999999987 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.017
      YIEGIA 112 lltalvtslavilisil.vgiivglilllilkklmkgksigdi.aevkeaklsfkgseLkvddivimniGlkesreki.....lkeglgviikPkdena 203
                 l+t+lv++++  +  +  v+i+  +++   + ++ +++ i+++  e++  +l++ ++   +   ++ n+ +k+s++++     +k++  v i+P+++++
  CCD22527.1 142 LITSLVVACLRKFSYWStVSILNEFLVYNSSINIHERNFIENFnSEIEVENLKLIDKVPWISIQYLSNVDTKSSKKEVdnmshMKTATTVSIRPNNSHQ 240
                 678888877776555540455555566666778999999999845899999999999999998999999999998876222225678899999999876 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00048       1.2       1      62 [.      16      84 ..      16     102 .. 0.80
   2 ?    2.4   0.6     0.048   1.2e+02      55      83 ..     111     140 ..      81     151 .. 0.62
   3 ?    1.7   0.1     0.084   2.1e+02      17      62 ..     202     250 ..     189     252 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00048
                EEEEECCHHC.HHHHHHHTCSEEEEESSSSSEC.....ECCTTTTSEEEEEC.CESSTTSCCGGGHHHH CS
        DSPc  1 lylgskstas.lallsklgitlvinvtkevpna.....nalkkseieklrip.vedehetkiskyleea 62
                ly gs+++    ++l+ l++++++ +t+e         ++ + ++i  l+ip ++d++++k  k l+e 
  CCD22527.1 16 LYRGSQPREInIPFLKMLNLNYIVSLTSEPLGDdptmlQFCHSNGISILHIPcQDDKQSDKKKKKLKEE 84
                688999998889***************776544889998889**********66668888888888765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.048
                 CGGGHHHHHHHHHHH.HHTT-EEEEEESSS CS
        DSPc  55 iskyleeavefidka.kqkgkkvlVHCqaG 83 
                 +  + + + + ++ +  +++  +++HC  G
  CCD22527.1 111 VPIDYDVVERCVKFLvDKRHYPCYIHCSSG 140
                 444445555566643388999******998 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.084
                 HTCSEEEEESSSSSEC...ECCTTTTSEEEEECCESSTTSCCGGGHHHH CS
        DSPc  17 lgitlvinvtkevpna...nalkkseieklripvedehetkiskyleea 62 
                 ++i++  nv ++ +++   n+ +++  + ++i  +++h++ i k l+++
  CCD22527.1 202 ISIQYLSNVDTKSSKKevdNMSHMKTATTVSIRPNNSHQDSIPKGLPKL 250
                 5788999998777777778788888889999999999999998888776 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.48   1.2e+03      76     101 ..      70      97 ..      52     126 .. 0.56
   2 ?   12.4   1.8     5e-05      0.13      42     122 ..     150     238 ..     141     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.48
                    xxxxxxxxxxxxxxxxxxxxxxxxx..x RF
  NAD_binding_6  76 seyeaedasdqlissiegenseslk..q 101
                     ++++++++++l + +++++se+ k  +
     CCD22527.1  70 DDKQSDKKKKKLKEEEDNKKSEQDKgeK 97 
                    3334444444444444444444333541 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5e-05
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  42 vvressslewfkdvLneleeeksegnieihiYlTseyea.........edasdqlissiegenseslkqgvdavsgtrnvkihfgRPnlk 122
                      r+ s ++ ++ +Lne   ++s++ni  ++++ + +++         +++   +i+   + +++s k++vd +s ++ +++   RPn +
     CCD22527.1 150 CLRKFSYWSTVS-ILNEFLVYNSSINIHERNFIENFNSEievenlkliDKVPWISIQYLSNVDTKSSKKEVDNMSHMKTATTVSIRPNNS 238
                    56999*******.***************9999998888888889988866666666666666777778**********7777777**965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2048  (0.114228); expected 358.6 (0.02)
Passed bias filter:                      736  (0.0410508); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 1900.55
//
Query:       CCD22528.1  [L=185]
Description: hypothetical protein NDAI_0A03710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-10   41.3   0.0    2.7e-10   40.4   0.0    1.5  1  RPAP2_Rtr1  Rtr1/RPAP2 family


Domain annotation for each model (and alignments):
>> RPAP2_Rtr1  Rtr1/RPAP2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.5e-14   2.7e-10       1      74 [.      56     123 ..      56     124 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.5e-14
                 GG--HHHHHHHHHHHHCTT--SSTT--S--SS-----------.....--TTGGGGT-SSHHHHHHHHHHHHCS CS
  RPAP2_Rtr1   1 rllspsdyddvveERniekkCGyplCnnsleedkrqkekyrisrkakkvvereelekfCSkaCaerslavraqL 74 
                 r+++p++++ +v  R  +k+CGyplC+++ ++ +  +  + +        ++++ +kfCS+ ++++  +++aqL
  CCD22528.1  56 RFFTPETFQMLVLQRINNKRCGYPLCDKPVSHIN-HSDAFSLI-----NTKTSYFNKFCSDLHMKSTSFLQAQL 123
                 69****************************9999.88888887.....6788999*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1377.41
//
Query:       CCD22529.1  [L=434]
Description: hypothetical protein NDAI_0A03720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0082   16.3   0.9      0.047   13.8   0.3    2.6  2  TPR_22        Tetratricopeptide repeat
  ------ inclusion threshold ------
        0.1   12.7   1.7       0.16   12.0   0.2    2.2  2  Complex1_LYR  Complex 1 protein (LYR family)


Domain annotation for each model (and alignments):
>> TPR_22  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.3   5.2e-06     0.047      12      66 ..       8      61 ..       1      77 [. 0.83
   2 ?   -1.2   0.0      0.25   2.3e+03       9      38 ..      69      99 ..      64     107 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.2e-06
      TPR_22 12 hlitpqealkkLlkilskkeqeevsklvsrerlklsandpdyqikinslaWevyk 66
                hl + +  + +L +++ ++ +++v  +  r+r+k   nd  ++ k n  +W +++
  CCD22529.1  8 HLSHRT-YVIRLYRLTLRNTKKHVNSVQLRHRVKTTINDVFHKHKCNISSWSIHN 61
                554444.445799999999*********************************986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.25
      TPR_22  9 lgrhlitp.qealkkLlkilskkeqeevskl 38
                l  hl++   +a+ +L++ ++ ++++++ k 
  CCD22529.1 69 LNTHLMNNdVKAVWDLISKVKYHKKNQMKKA 99
                5677776525788999999888777776664 PP

>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   1.8e-05      0.16       3      38 ..      15      51 ..      13      65 .. 0.84
   2 ?   -2.0   0.1      0.44   3.9e+03      23      36 ..     387     400 ..     380     404 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
  Complex1_LYR  3 vLsLYRalLRearkfpdyn.treyfrrriRdeFrknk 38
                  v++LYR  LR+++k  +    r+  +  i d F+k+k
    CCD22529.1 15 VIRLYRLTLRNTKKHVNSVqLRHRVKTTINDVFHKHK 51
                  99**********555555559***************9 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.44
  Complex1_LYR  23 reyfrrriRdeFrk 36 
                    +yf+++++ +F+k
    CCD22529.1 387 VKYFQSKTQRMFDK 400
                   57999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3332.52
//
Query:       CCD22530.1  [L=152]
Description: hypothetical protein NDAI_0A03730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.4e-17   61.3   0.0    8.9e-17   61.0   0.0    1.1  1  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
  ------ inclusion threshold ------
       0.18   12.2   0.8        1.2    9.5   0.1    2.4  3  CLU_N        Mitochondrial function, CLU-N-term


Domain annotation for each model (and alignments):
>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0     1e-20   8.9e-17       2     114 ..      15     143 ..      14     148 .. 0.81

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 1e-20
                  HHHHHHHCTTT.....SSEEEEEEECTT.TEEEEEE.SS-.......HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--T.TS-HHHHH CS
  Cofilin_ADF   2 keafkelksgk....ktkyilfkidddk.eeivvee.ege.......tyeelreelpeseprYavydveyehddeskrsklvfIswvPd.sapikqkm 85 
                  k+++++++ ++    + k + +ki+++  +eiv+++ e +       +++el+e +p++ pr+ ++ +  +++d+ k+++lv+I+w P   ++ ++km
   CCD22530.1  15 KKQIQQFRISTgrieTVKGLSIKIQPKPsYEIVIDDdE-QeeldemtDLSELAEIMPDNSPRFLLLAYPLTTKDGIKQTPLVLIYWKPVtVVSQEWKM 111
                  577888888888888889999999988779*****952.34677888889999999*********************************5589***** PP

                  HHHHHHHHHHHHCTTSEEEEEE....-CGGCCS CS
  Cofilin_ADF  86 lyasskdalkkelkgisveiea....tdldelt 114
                  lya+  + +++e+  ++  +e+    +d ++++
   CCD22530.1 112 LYAGALEMIRSECGTYKL-VEVssglEDDSDIE 143
                  *************55553.44422224444444 PP

>> CLU_N  Mitochondrial function, CLU-N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.35   3.2e+03      34      39 ..      16      21 ..       6      43 .. 0.43
   2 ?    9.5   0.1   0.00014       1.2      23      66 ..      43      86 ..      42      92 .. 0.72
   3 ?   -0.2   0.0      0.14   1.3e+03      24      48 ..     127     148 ..     124     151 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.35
       CLU_N 34 erlnef 39
                ++++ f
  CCD22530.1 16 KQIQQF 21
                333333 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00014
       CLU_N 23 nyhLkyengngerlnefvtlseiieeedvdelkLelkekpYter 66
                +y+++++++++e+l+e++ lse++e   +++  + l   p t++
  CCD22530.1 43 SYEIVIDDDEQEELDEMTDLSELAEIMPDNSPRFLLLAYPLTTK 86
                79999976699************665544666666655555555 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.14
       CLU_N  24 yhLkyengngerlnefvtlseiiee 48 
                 y+L+    ++  l +++ ++e+ie+
  CCD22530.1 127 YKLVE---VSSGLEDDSDIEELIEQ 148
                 56644...68889999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1137.42
//
Query:       CCD22531.1  [L=561]
Description: hypothetical protein NDAI_0A03740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-68  229.4   0.0    8.4e-68  229.2   0.0    1.1  1  Aminotran_1_2  Aminotransferase class I and II
     0.0073   15.1   0.0      0.015   14.0   0.0    1.4  1  OKR_DC_1       Orn/Lys/Arg decarboxylase, major domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.2   0.0   9.4e-72   8.4e-68       3     363 .]     157     515 ..     155     515 .. 0.93

  Alignments for each domain:
  == domain 1  score: 229.2 bits;  conditional E-value: 9.4e-72
                    EEESSSSSTTSTTSS.HHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E CS
  Aminotran_1_2   3 vinLgsneylgdsgk.ptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde 95 
                    ++nL+s +ylg +++  +++++a + ++  g+ +gg+++++g++d++  +e+ +ak++g        +e++ ++++G++ +++ ++++++   ++ 
     CCD22531.1 157 CLNLSSYNYLGFAQSeGQCTDAALESIDqyGIPSGGPRTQIGTTDLQVRAEKLMAKYIG--------KEDSMIFSMGYSTNANFFNAFMD--SKCL 242
                    79*********************************************************........999*******************8..**** PP

                    EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTE.......TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEE CS
  Aminotran_1_2  96 ilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnk.......ktkvilvesphNPtGtvatleeleklldlakkynlll 184
                    +++++++++s+ +++rlsg++v++++       h d+e+le++++e+    +       k+ +i+ve+ +++ Gt+++l++l++l   +kky+++l
     CCD22531.1 243 VISDELNHTSIRTGVRLSGAAVRTFK-------HGDMEGLEKLIREQIVLGQpktnrpwKKIIICVEGLYSMEGTLCNLPKLVEL---KKKYKCYL 328
                    **************************.......*************9888889********************************...******** PP

                    EEEETTTTCBSSSSHTHHH..HGGSTTSTT..EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH.... CS
  Aminotran_1_2 185 fvDeaYagfvfgsldavat..ranveeepn..llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqs.... 272
                    +vDea++++++g+++      + +++ +pn  ++++g++ K+fG+aG   Gyi++++++++ lr   ++  + ++ +a v+a +  +l+++     
     CCD22531.1 329 YVDEAHSIGAMGPTG---RgvCELFDIDPNeiDILMGTFTKSFGAAG---GYIACDKWIIDRLRLDINTASYGEPSPAPVLAQIISSLETIIgkrn 418
                    ************653...13455555555566***************...*******************999777777777777777776666788 PP

                    ..HHHHHHHHHHHHHHHHHHHHHHSTEEEECCS.CSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEEC.TTS-HHHHHHHHH CS
  Aminotran_1_2 273 ..eleemrqrlqkrrkelrdeLaelglkvlasq.sgmflltdlsaetakelskkLleevgvyvtpgtsftv...pgrlRitv.Aglteeeleelve 361
                      e ee+ qr++ ++++lr +L++lg++v++   s ++++ +++++++ ++s+++l++ +++v+ + ++ +   ++r+R+++ A+lt+e++++l++
     CCD22531.1 419 pgEGEERLQRIAFNSRYLRLGLQRLGFIVYGTAdSPVIPMLLYCPSKMPAFSRMMLQR-KIAVVIVAYPATpliESRVRFCMsASLTKEDIDYLLR 513
                    ******************************9988************************.999999999999999********************99 PP

                    HH CS
  Aminotran_1_2 362 al 363
                    ++
     CCD22531.1 514 HV 515
                    85 PP

>> OKR_DC_1  Orn/Lys/Arg decarboxylase, major domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.7e-06     0.015      69     207 ..     204     335 ..     198     339 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHCT-SEEEEESSHHHHHHHHHHHHH--TTEEEEEESS--HHHHHHHHHS-EEEEEE--EB-TTS-BE---GGGGSHHHHHHHHHHSTTTG CS
    OKR_DC_1  69 keaqkyaarvfgadksyfvvnGTsssnkvvlnavltpgdlvlvdRNcHKSiehalvlsgatPvylepernalgiiggidlkefeeetlkekikevpdak 167
                   a+k++a+  g + s +   G s+ n    na + +  lv+ d  +H Si +++ lsga    +     + g + g+++  ++e+ +  + k   + k
  CCD22531.1 204 VRAEKLMAKYIGKEDSMIFSMGYST-NANFFNAFMDSKCLVISDELNHTSIRTGVRLSGAAVRTF-----KHGDMEGLEK-LIREQIVLGQPKTNRPWK 295
                 579*******************987.67789****************************974333.....3444455555.223333333333333444 PP

                 SESEEEEESS-TTSEEE-HHHHHHHHTTSESEEEEE-TT- CS
    OKR_DC_1 168 aprlavitnsTYdGvlynakeivdkleklsdrilfDeAwv 207
                 +   +v  +    G+l n+ ++v++ +k++ ++++DeA+ 
  CCD22531.1 296 KIIICVEGLYSMEGTLCNLPKLVELKKKYKCYLYVDEAHS 335
                 4466666666778*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4234.95
//
Query:       CCD22532.1  [L=535]
Description: hypothetical protein NDAI_0A03750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-23   83.7   1.0    5.2e-14   52.9   0.0    3.0  3  ABC_tran  ABC transporter
    2.5e-07   30.8   1.1     0.0027   17.6   0.0    2.6  3  AAA_21    AAA domain, putative AbiEii toxin, Type IV TA syste
    0.00045   20.8   0.9       0.15   12.6   0.1    3.0  3  AAA_23    AAA domain
     0.0021   17.7   0.0     0.0041   16.8   0.0    1.4  1  AAA_29    P-loop containing region of AAA domain
  ------ inclusion threshold ------
      0.046   13.9   0.0        3.2    8.1   0.0    2.4  2  SbcCD_C   Putative exonuclease SbcCD, C subunit
      0.067   13.5   0.1        3.6    7.9   0.0    2.9  2  AAA_22    AAA domain
        0.2   10.7   0.0       0.32   10.0   0.0    1.3  1  T2SSE     Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   9.6e-10   2.5e-06      79     136 ..     114     183 ..      31     184 .. 0.64
   2 ?   -1.2   0.1         1   2.7e+03      57      96 ..     252     308 ..     237     314 .. 0.60
   3 !   52.9   0.0     2e-17   5.2e-14       1     136 [.     319     480 ..     319     481 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 9.6e-10
                 H...........HHHTC.....HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 x...........xxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  79 n...........esdee.....iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 +           +s+++      ek++++l+l+el+d+ +      LS Gq +r  la++llk+p+lll+D+p+
  CCD22532.1 114 SigsqfvnykvsTSNRKinmklYEKLIKELNLVELQDRWA----MGLSNGQMRRARLANSLLKEPDLLLVDDPF 183
                 2666666666653333355667899*********999999....****************************96 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1
                 CCHCEEEE-SS..--S-TTSBHHHH...............HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxx..xxxxxxxxxxxx...............xxxxxxxxxxxxxxxxx RF
    ABC_tran  57 lrkeigvlpqe..pqlfpeltvren...............esdeeiekalsklglke 96 
                 ++++i  + ++  + l++++ ++en               +s+ e+ k+ ++l+lk+
  CCD22532.1 252 VQNKIDQIRKQeqEILKKQILNEENsytvndlvamhplygKSKHEVIKMPHTLELKG 308
                 444444443332234445554555566666667777777777777777777777766 PP

  == domain 3  score: 52.9 bits;  conditional E-value: 2e-17
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.teGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren................. 79 
                 l+ +++++++g+k+ i G+nG+GKStLl+l++ ++ +  + ++  +g + ++   +    +k+ig+ + e +    ++v+++                 
  CCD22532.1 319 LQSLHWEVQPGSKWHIRGDNGSGKSTLLSLITAEHPQsWNSKVVENGIERRSgnANYFDINKKIGMSSPELHAILLKNVGDKlnvlecistgfhegpnn 417
                 678999**************************99866434555333444444667888999999999999776666667777889999*********** PP

                 ..........HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ..........esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                           ++++ ++ ++s +gl+ + ++      ++LS  +++ +   r l+k p++l+lDE++
  CCD22532.1 418 flpmwsklneNQKKLVDMYISYFGLTSIINKSF----KELSVSEQKLILFIRGLIKMPEVLILDEAF 480
                 **9999775444444888888888888666666....****************************97 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.3   3.4e+03     117     158 ..     109     150 ..      98     155 .. 0.80
   2 !   17.6   0.0     1e-06    0.0027     236     284 ..     155     200 ..     141     214 .. 0.88
   3 !   10.9   0.2   0.00011      0.29       6      19 ..     336     349 ..     334     383 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
      AAA_21 117 girggvsvfslkelsvsepndlqfgkaltditsrawslllll 158
                  i g+  + +  +  vs +n+++++k++ +++++++  +l +
  CCD22532.1 109 FILGDSIGSQFVNYKVSTSNRKINMKLYEKLIKELNLVELQD 150
                 566666777788899999999999999999999988877766 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1e-06
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellke 284
                  lS G+ r ++l+ +ll  +   +lll+D+p +gL+Pk+++ + +ll++
  CCD22532.1 155 GLSNGQMRRARLANSLLKEP---DLLLVDDPFLGLDPKATSIISKLLSN 200
                 4799999999*******999...9**********************954 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00011
      AAA_21   6 GpNgsGKSnLLdal 19 
                 G+NgsGKS+LL ++
  CCD22532.1 336 GDNGSGKSTLLSLI 349
                 9**********999 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.012        30     153     178 ..     142     274 ..      66     285 .. 0.54
   2 !   12.6   0.1   5.8e-05      0.15      24      40 ..     334     350 ..     333     351 .. 0.90
   3 ?   -1.1   0.0      0.87   2.2e+03     119     175 ..     388     453 ..     358     465 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.012
      AAA_23 153 e.................................................................................................. 153
                 e                                                                                                  
  CCD22532.1 142 Elnlvelqdrwamglsngqmrrarlansllkepdlllvddpflgldpkatsiiskllsnynaptvehtssvrgcpvviglryqdplpswathlccvdeq 240
                 033333333444444444444444444444445555555555555555566666666667777777777777777777777777777777777777776 PP

      AAA_23 154 .......rleelekeleeledekkl.lekl.eqe 178
                         ++e++++++++ +++++ l+k+ ++e
  CCD22532.1 241 lgilfqgPIKEVQNKIDQIRKQEQEiLKKQiLNE 274
                 6666666677777777776664444044432222 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.8e-05
      AAA_23  24 ItGpNGaGKTTildAik 40 
                 I G+NG+GK+T+l  i+
  CCD22532.1 334 IRGDNGSGKSTLLSLIT 350
                 78***********9887 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.87
      AAA_23 119 qfisellgskkiilnlilflgqer.........feefelkdkkerleelekeleeledekkllekl 175
                 ++   ll++  + ln++ ++  +           + ++++++k+ ++ ++  +   + ++k +++l
  CCD22532.1 388 ELHAILLKNVGDKLNVLECISTGFhegpnnflpMWSKLNENQKKLVDMYISYFGLTSIINKSFKEL 453
                 333334445555566666666666888888888777788888887777777777777777777766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.6e-06    0.0041      16      46 ..     323     349 ..     318     360 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.6e-06
      AAA_29  16 tieidlkgatlltGpsGsGKSTllDAiqalL 46 
                  +e+++ +   + G++GsGKSTll     l+
  CCD22532.1 323 HWEVQPGSKWHIRGDNGSGKSTLL----SLI 349
                 5777777788999**********9....333 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.033        86      62      88 ..     172     198 ..     156     200 .. 0.83
   2 ?    8.1   0.0    0.0012       3.2      63      89 ..     470     496 ..     447     497 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.033
     SbcCD_C  62 palrlvfLDEAFsklDeesiatllell 88 
                 + ++l++ D+ F +lD++ ++ + +ll
  CCD22532.1 172 KEPDLLLVDDPFLGLDPKATSIISKLL 198
                 5699**************998877776 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0012
     SbcCD_C  63 alrlvfLDEAFsklDeesiatllelle 89 
                  +++++LDEAFs +  e + ++ e+le
  CCD22532.1 470 MPEVLILDEAFSAMEIEPMIQCQEFLE 496
                 57899*********9888888877775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.081   2.1e+02      44      99 ..     119     181 ..      92     219 .. 0.64
   2 ?    7.9   0.0    0.0014       3.6      12      38 ..     336     368 ..     333     498 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.081
      AAA_22  44 fvtlpsstsskdllrellralglelka........erlsseell.ealeqalraravielliiDE 99 
                 fv+ ++sts +++  +l ++l  el+          +ls+ +++ ++l++ l +  +  ll++D+
  CCD22532.1 119 FVNYKVSTSNRKINMKLYEKLIKELNLvelqdrwaMGLSNGQMRrARLANSLLKEPD--LLLVDD 181
                 666666666666666666666655555555577776666666666667666666666..777775 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0014
      AAA_22  12 GesGtGKTtllrrlleqldeeakaee......e 38 
                 G  G+GK+tll  ++ ++++  + +       +
  CCD22532.1 336 GDNGSGKSTLLSLITAEHPQSWNSKVvengieR 368
                 999**************9875444436666662 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00013      0.32     125     186 ..     325     384 ..     252     397 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00013
       T2SSE 125 avrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvqlnakkakv 186
                  v+      + G  gsGK+tll  + +e ++s  +  +vE  +E +  +an+  +n+k  ++
  CCD22532.1 325 EVQPGSKWHIRGDNGSGKSTLLSLITAEHPQS-WNSKVVENGIERRSGNANYFDINKK-IGM 384
                 55555555678999*****************9.888999****************999.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1030  (0.0574488); expected 358.6 (0.02)
Passed bias filter:                      785  (0.0437838); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.38
# Mc/sec: 4180.06
//
Query:       CCD22533.1  [L=95]
Description: hypothetical protein NDAI_0A03760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-18   65.7   0.2    2.8e-18   65.4   0.2    1.2  1  LSM       LSM domain
  ------ inclusion threshold ------
      0.065   12.9   0.1       0.11   12.2   0.1    1.3  1  Hfq       Hfq protein


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.2   3.1e-22   2.8e-18       2      65 ..       6      70 ..       5      72 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.4 bits;  conditional E-value: 3.1e-22
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET.EEEEEEEEEEEGGGEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk.ekrklglvliRGnnivli 65
                f+k l++++v+v+lkn+ el+GtL+++Dqf+Nl L++++ t+++k  +  ++ +++iRG++++++
  CCD22533.1  6 FFKTLVDQEVVVQLKNDIELKGTLQSVDQFLNLKLDNISCTDTKKYpHLGSVRNIFIRGSTVRYV 70
                899***************************************99999*****************8 PP

>> Hfq  Hfq protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.2e-05      0.11      15      37 ..      14      36 ..       9      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.2e-05
                EEEEEETTS-EEEEEEEEE-SSE CS
         Hfq 15 pvtifLvnGiklkGviksfDnft 37
                +v++ L n i lkG+++s D+f 
  CCD22533.1 14 EVVVQLKNDIELKGTLQSVDQFL 36
                79*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.21s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 825.72
//
Query:       CCD22534.1  [L=186]
Description: hypothetical protein NDAI_0A03770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-14   53.1   5.2    2.9e-14   52.5   5.2    1.3  1  zf-C2H2_10  C2H2 zinc-finger
  ------ inclusion threshold ------
      0.042   13.6   0.3      0.058   13.2   0.3    1.2  1  DUF2538     Protein of unknown function (DUF2538)
       0.32   10.8   2.7       0.49   10.2   1.8    1.7  2  zf-CCHC_4   Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   5.2   4.8e-18   2.9e-14       1      23 []     159     181 ..     159     181 .. 0.99

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 4.8e-18
  zf-C2H2_10   1 KnkitCSYChetGHtRAkCekRL 23 
                 Knki+CS+Che+GHtRAkC+kRL
  CCD22534.1 159 KNKIACSFCHEIGHTRAKCQKRL 181
                 9*********************9 PP

>> DUF2538  Protein of unknown function (DUF2538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   9.7e-06     0.058       2      68 ..       4      71 ..       3      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.7e-06
     DUF2538  2 arktyekirhidkvfdrleqqii.eskdrahlrkelfyvndehrenyealliyykeseenplvdgacy 68
                +r+t   i++i +v+d+l + i+ +++d ++lr e+ y  +e       ll   k+ ++npl +   +
  CCD22534.1  4 TRNTEHDIEKISQVMDKLAKLILaKQNDGTQLRLEYEYKLKELNTLISLLLNLSKNINDNPLGNQGEF 71
                799***************999872567899********99999988888888999999***9876655 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.58   3.5e+03      17      28 ..      29      40 ..      25      41 .. 0.76
   2 ?   10.2   1.8   8.2e-05      0.49      32      48 ..     162     178 ..     160     179 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.58
   zf-CCHC_4 17 sGeeatiefkYE 28
                +++ + ++ +YE
  CCD22534.1 29 QNDGTQLRLEYE 40
                567788899998 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 8.2e-05
   zf-CCHC_4  32 sfCyiCgvlGHsdkrCd 48 
                 ++C+ C  +GH++++C+
  CCD22534.1 162 IACSFCHEIGHTRAKCQ 178
                 68**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1829  (0.102013); expected 358.6 (0.02)
Passed bias filter:                      664  (0.037035); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1427.36
//
Query:       CCD22535.1  [L=147]
Description: hypothetical protein NDAI_0A03780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-43  147.9   0.0    1.3e-43  147.8   0.0    1.0  1  dUTPase   dUTPase


Domain annotation for each model (and alignments):
>> dUTPase  dUTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.8   0.0   7.3e-48   1.3e-43       2     129 .]      17     146 ..      16     146 .. 0.98

  Alignments for each domain:
  == domain 1  score: 147.8 bits;  conditional E-value: 7.3e-48
                 TCTBEBESSTT-SSEEEE-SSSEEEETTEEEEEEEEEEEE--TTEEEEEEE-HHHHHHHEEEEE.EEEETTBTSEEEEEEEE-SSS-EEE-TT-EEEEE CS
     dUTPase   2 eaeiptrkspesAgyDlsaakdltvkpgetvlvptdisiklpdglaalilpRSglaakglivvp.gvidsdyrGevkvvlfnltkkdvkikkgdRiAqL 99 
                 +a++pt++s ++AgyD++a+++++++++++ lv+tdis+++p g++++i+pRSgla+k++i+++ gv+d+dy+Gevk+vlfn++kkd++++ gdR+AqL
  CCD22535.1  17 TAKAPTKGSITAAGYDIYASQPTIIPAEGQGLVSTDISFTVPLGTYGRIAPRSGLAVKHGIQTGaGVVDRDYTGEVKIVLFNHSKKDFNVEIGDRVAQL 115
                 6899*********************************************************************************************** PP

                 EEEEBEC.GEEEEESSTTTESSBTTXTTTTX CS
     dUTPase 100 ifarilt.aeleevetlkatergeggfgssg 129
                 i+++i++ ael  v++l+++ rgeggfgs+g
  CCD22535.1 116 ILEKIVDnAELVIVDSLEESLRGEGGFGSTG 146
                 ****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1180.77
//
Query:       CCD22536.1  [L=232]
Description: hypothetical protein NDAI_0A03790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-45  154.1   0.6    2.8e-45  154.1   0.6    1.7  2  Mog1       Ran-interacting Mog1 protein
     0.0088   16.0   4.9      0.019   14.9   4.9    1.7  1  DUF3439    Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> Mog1  Ran-interacting Mog1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   0.6   3.1e-49   2.8e-45       1     138 []      14     186 ..      14     186 .. 0.89
   2 ?   -1.6   0.1      0.36   3.2e+03      75     106 ..     193     224 ..     187     229 .. 0.61

  Alignments for each domain:
  == domain 1  score: 154.1 bits;  conditional E-value: 3.1e-49
                 EE-TTTSSEEE--TT-EEGGGTS---TTEEEEEETTT............TEEEEEE--B--TT--THHHHHHHHHHHTTTSS--.......--EEEEEE CS
        Mog1   1 teLyGGaitvelPkgflDvSklRqvPDnQEVfvdkss............desiIvellerveeksdeealklhledlaeendase......eseveeve 81 
                 t+LyGGait+++P+gflDvS+lR+vPD+QEV+v+++s            desiI++ll++v+e++d +alklh+ed+++ n++++      +      +
  CCD22536.1  14 TPLYGGAITTVIPQGFLDVSMLREVPDTQEVYVNNRStetqpyndglanDESIIIDLLQAVPESNDLDALKLHIEDIVSLNNTTTnnnnsnN------N 106
                 58********************************9999********************************************9985554441......3 PP

                 E--........................SS----SEEEEEEEE-B---TTS--..--B-EEEEEEEEETTTTEEEEEEEEE- CS
        Mog1  82 kle........................akkeeetsailligtqkvakfnkeeekeetvaillaliRlkevetDvlitvnvP 138
                 + e                        ++    t+ i++i++++++k++k+e+ke t+ ++++liRlkevetDv+it+nvP
  CCD22536.1 107 NNEtvqkddttaptpapyqilniqtdiSNTYLGTNCISCIVVESATKWGKQEMKE-TLITCIGLIRLKEVETDVIITINVP 186
                 2224445667788999999999999985555556679***************866.************************9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.36
                 -EEEEEEE--SS----SEEEEEEEE-B---TT CS
        Mog1  75 seveevekleakkeeetsailligtqkvakfn 106
                 ++++++   +++ +++++a++l  +q +++f+
  CCD22536.1 193 TTTTTTIDPNKNLPTNVKASSLLLKQMLSQFK 224
                 22233333347788888888888888777765 PP

>> DUF3439  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   4.9   2.2e-06     0.019      41      73 ..     181     213 ..     144     222 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.2e-06
     DUF3439  41 rsiicpttttttttttttmpttttlptttkmsm 73 
                  +i +ptt  tttttttt+     lpt  k s 
  CCD22536.1 181 ITINVPTTEETTTTTTTTIDPNKNLPTNVKASS 213
                 56889************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1838.60
//
Query:       CCD22537.1  [L=395]
Description: hypothetical protein NDAI_0A03800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-13   50.4   0.9    1.1e-12   48.4   0.0    2.4  3  Gly_transf_sug   Glycosyltransferase sugar-binding region con
  ------ inclusion threshold ------
      0.026   13.8   3.3      0.042   13.1   3.3    1.2  1  HemX             HemX, putative uroporphyrinogen-III C-methyl
      0.038   13.7   0.1      0.078   12.7   0.0    1.5  2  TrbL             TrbL/VirB6 plasmid conjugal transfer protein
      0.046   14.3   1.7       0.14   12.7   1.7    1.8  1  MRP-S32          Mitochondrial 28S ribosomal protein S32
      0.047   14.2   0.1      0.098   13.1   0.1    1.5  1  DUF4179          Domain of unknown function (DUF4179)
      0.056   11.5   3.3      0.073   11.2   3.3    1.0  1  DUF2967          Protein of unknown function (DUF2967)
      0.085   12.9   0.3       0.18   11.9   0.3    1.5  1  Mating_N         Mating-type protein beta 1
      0.093   12.8   3.7       0.15   12.1   3.7    1.3  1  Peptidase_S49_N  Peptidase family S49 N-terminal
       0.44   10.6   6.9          1    9.4   6.9    1.6  1  DUF1640          Protein of unknown function (DUF1640)
       0.77    8.9   4.6        1.2    8.3   4.6    1.3  1  GLE1             GLE1-like protein
        1.5    8.7   5.4       0.73    9.8   2.5    2.0  2  DUF1514          Protein of unknown function (DUF1514)
        2.3    8.2   5.0        4.9    7.1   5.0    1.5  1  DUF4446          Protein of unknown function (DUF4446)


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       2.4   3.6e+03       5      28 ..      54      78 ..      33     111 .. 0.54
   2 !   48.4   0.0   7.3e-16   1.1e-12       5      95 ..     149     233 ..     146     236 .. 0.88
   3 ?   -1.7   0.0       3.2   4.7e+03      46      46 ..     338     338 ..     282     383 .. 0.48

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.4
  Gly_transf_sug  5 kkaieslakahpd.yqvvvlskele 28
                    +++i+++ +++++  +++   ++l+
      CCD22537.1 54 SQSINTVSSKQKSdQEILQKFEKLT 78
                    4444444432222122222222222 PP

  == domain 2  score: 48.4 bits;  conditional E-value: 7.3e-16
  Gly_transf_sug   5 kkaieslakahpdyqvvvlskelekvrvaildlefllsdtpwfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlkslrnsigaee 95 
                     ++  + + +++p + + +l+++ +        ++ ++s+ p++ +a++ lp  i ++D+++++iL++ GGiY D+D+ +l+++  ++++e 
      CCD22537.1 149 MEIKDIWDSQNPGFVHEILNDDIS-----EALIHHYYSKVPEVIKAYNYLPSRILKIDFFKYLILLARGGIYADVDTKPLQPV-PNWIPEA 233
                     666777999************988.....555677777799999***************************************.9999876 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.2
  Gly_transf_sug  46 w 46 
                     w
      CCD22537.1 338 W 338
                     1 PP

>> HemX  HemX, putative uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   3.3   2.8e-05     0.042      10      96 ..      21     110 ..      14     120 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.8e-05
        HemX  10 lallvalavgaglyylgqqqvqeltaev..aelqqqlaaleqqlaqveaekeqkqeleerlqql.aeklealekeleqlqkqleelqqql 96 
                 + l++a+ +   + + ++  + +   ++  +e++q ++++++++++ ++  ++ ++l+++l++  ++++ + e++ + l+k+++el+  l
  CCD22537.1  21 ISLIIAIFLLIRFLNNNNANNLQVILQNlpKEISQSINTVSSKQKSDQEILQKFEKLTKQLKKSqEDQTRQFERQRKILEKKIQELKPPL 110
                 444444444333333333333333334467888888888888888844444555555555555445666666666666677777666555 PP

>> TrbL  TrbL/VirB6 plasmid conjugal transfer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.2e-05     0.078      22      87 ..      14      82 ..      10      96 .. 0.74
   2 ?   -3.8   0.0       6.1   9.1e+03      44      64 ..     316     337 ..     309     342 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.2e-05
        TrbL 22 aelvkrllklgliaalatnw..ggyativvdsfaglpeaaggallssagsstsp.tldqlgldvadkll 87
                ++l++ ++ l++ ++l+  +  ++ a+++  ++++lp+++++++++ +++++s+  + q   +++++l 
  CCD22537.1 14 KRLIWIIISLIIAIFLLIRFlnNNNANNLQVILQNLPKEISQSINTVSSKQKSDqEILQKFEKLTKQLK 82
                67888888888877775554446777778889999*************999988888887555555553 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6.1
        TrbL  44 yativvdsfag.lpeaaggall 64 
                 +++ +++ f++ +++++ g ++
  CCD22537.1 316 WTDVIFKYFNDyMKSGINGKVT 337
                 5667888888878887777665 PP

>> MRP-S32  Mitochondrial 28S ribosomal protein S32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.7   9.4e-05      0.14      20      63 ..      48      91 ..      45     101 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.4e-05
     MRP-S32 20 dfPYehtkPlplleneeetseqvlkeekkleeklkkkkkepvre 63
                ++P e+++ ++++++++++++++l++ +kl+++lkk++++++r+
  CCD22537.1 48 NLPKEISQSINTVSSKQKSDQEILQKFEKLTKQLKKSQEDQTRQ 91
                7899*********************77******99999988875 PP

>> DUF4179  Domain of unknown function (DUF4179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   6.6e-05     0.098       5      65 ..      15      88 ..       8      92 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.6e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............--SS-HHHHT--SS-.......HHHHSEEEEEEEEET CS
     DUF4179  5 rikkvaaaaaalvllllssrllspalAsal..........n.pvigslfeklsdskg.......eqeyvkpvnksaedn 65
                r+ ++++   ++++++l +r+l+   A++l            + i+++ +k +   +        ++++k++ ks+ed+
  CCD22537.1 15 RLIWIIIS--LIIAIFLLIRFLNNNNANNLqvilqnlpkeIsQSINTVSSKQK---SdqeilqkFEKLTKQLKKSQEDQ 88
                44444444..444444489********99988888876542344444444444...255599999999999*****997 PP

>> DUF2967  Protein of unknown function (DUF2967)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.3   4.9e-05     0.073     670     734 ..      58     121 ..      51     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.9e-05
     DUF2967 670 ncsvyerklgadifqqysrltqqeqlqqqqeqrewerdrppsrknskrirpdsvihttirenqqy 734
                 n+   ++k+  +i+q++ +lt+q +  q+++ r++er+r    k  + ++p  +  +tire   y
  CCD22537.1  58 NTVSSKQKSDQEILQKFEKLTKQLKKSQEDQTRQFERQRKILEKKIQELKPP-LSDATIREKLTY 121
                 55556789999**************999999******************996.678999998777 PP

>> Mating_N  Mating-type protein beta 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   0.00012      0.18       6      64 ..      62     117 ..      57     125 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
    Mating_N   6 laaesDedvrqtLdalrkdFfssLrgesealstFlsawskfdellqschdsLseeTlel 64 
                  +++sD+++ q  ++l k++ +s ++ +    +F ++ + +++ +q +++ Ls+ T+++
  CCD22537.1  62 SKQKSDQEILQKFEKLTKQLKKSQEDQT---RQFERQRKILEKKIQELKPPLSDATIRE 117
                 45566**************999865555...89***********************875 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.7    0.0001      0.15       9      91 ..      12      95 ..       7     109 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
  Peptidase_S49_N  9 FlaklvtlvvailvvvvlivalaakkkkekgelevtkLneeykelkeeleealld.eeelkaaekkekkeekeekkaekkkake 91
                     +l +l+ +++ +++ ++l++ + +++++++ ++ +++L +e ++  ++++++  + +e l+++ek +k+ +k+++ ++++ +++
       CCD22537.1 12 HLKRLIWIIISLIIAIFLLIRFLNNNNANNLQVILQNLPKEISQSINTVSSKQKSdQEILQKFEKLTKQLKKSQEDQTRQFERQ 95
                     566777778877778888888888888888899999999999998888886655515567778888888888888777554444 PP

>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   6.9   0.00069         1      31      98 ..      46     113 ..      39     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00069
     DUF1640  31 lneslekvakslvskselekseylqkaalselrkevqisersefaalrseteklqreleklkqkLree 98 
                 l++  +++++s+ + s  +ks +++  ++++l k++++s++ +  +++++++ l++++++lk  L + 
  CCD22537.1  46 LQNLPKEISQSINTVSSKQKSDQEILQKFEKLTKQLKKSQEDQTRQFERQRKILEKKIQELKPPLSDA 113
                 55555789999999999********************************************9988775 PP

>> GLE1  GLE1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.6   0.00081       1.2      17      62 ..      39      87 ..      30     122 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00081
        GLE1 17 dkelkkllgdlkrkInpkvgQltnss...eqlkkitkelkellesgkpv 62
                  +l+ +l++l ++I+ +++++++++   +++ +++++l++ l+++++ 
  CCD22537.1 39 ANNLQVILQNLPKEISQSINTVSSKQksdQEILQKFEKLTKQLKKSQED 87
                56788999*****************977777777777777777555542 PP

>> DUF1514  Protein of unknown function (DUF1514)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.5   0.00049      0.73       1      17 [.      17      33 ..      17      45 .. 0.82
   2 ?   -2.5   0.1       3.2   4.8e+03      31      37 ..     322     328 ..     320     332 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00049
     DUF1514  1 mWivisivlailLLvll 17
                +Wi+is+++ai+LL+  
  CCD22537.1 17 IWIIISLIIAIFLLIRF 33
                6*************965 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.2
     DUF1514  31 eYmndYL 37 
                 +Y ndY+
  CCD22537.1 322 KYFNDYM 328
                 89****7 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.0    0.0033       4.9       4      80 ..      19     104 ..      13     107 .. 0.39

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0033
     DUF4446   4 lvlavlvvillillivllvk.......lkklkkkykklmk.gk.dgksleellkekleeveelkeeseelekeieeleeklkkslq 80 
                 +++ +++ i+l++ ++++ +       l++l k++++ ++  + ++ks +e+l++  + +++lk+++e+ ++++e+ ++ l+k++q
  CCD22537.1  19 IIISLIIAIFLLIRFLNNNNannlqviLQNLPKEISQSINtVSsKQKSDQEILQKFEKLTKQLKKSQEDQTRQFERQRKILEKKIQ 104
                 23333333333333333333000011133333444333332221333333333333333455566666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3003  (0.167494); expected 358.6 (0.02)
Passed bias filter:                     1441  (0.0803726); expected 358.6 (0.02)
Passed Vit filter:                       240  (0.0133861); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.39
# Mc/sec: 3015.90
//
Query:       CCD22538.1  [L=702]
Description: hypothetical protein NDAI_0A03810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-85  287.1   2.6    2.8e-85  286.5   2.6    1.3  1  Syja_N    SacI homology domain


Domain annotation for each model (and alignments):
>> Syja_N  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.5   2.6   1.5e-89   2.8e-85       3     320 .]     117     407 ..     115     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 286.5 bits;  conditional E-value: 1.5e-89
      Syja_N   3 ilGlirllsgsyllvitkreevgtlkgkkeiykitevellplsseeeaekalkslkaktekkkeekeleekllklleklfessgsfYFsydlDltrslq 101
                 +lG+i+l+ ++y++v t  e+vg l+g+ +++ki++++l++   +  a ++++           ++e e ++l+lle ++ +++s+YFsy +Dlt+slq
  CCD22538.1 117 LLGFIQLKLNKYVVVGTAVETVGYLNGN-QLLKIKSFSLIKS-AP--AMDQVQ-----------NAE-EMEFLNLLELQL-NKSSLYFSYGYDLTNSLQ 198
                 79******99**************9887.**********994.22..233333...........334.788*****7666.6889************** PP

      Syja_N 102 rqlekssesskslplweraderFvWNrhllkpli........eaeldswllpviqGfveqsklklsksqkekekkevtltlisRrsrkraGtRylrRGi 192
                 r+  +   +++s ++we++d+rF+WN++++++l         ++  + ++ pvi+G+v+ +++  +      +k+++t+ lisR+sr+raGtRy+rRG+
  CCD22538.1 199 RNEYT---DKSSGSMWETVDDRFFWNHYMTSDLRslnevtknNNIGKYFIQPVIYGYVKLINTVFQ------NKTSITIGLISRKSRFRAGTRYFRRGV 288
                 **997...4555558*****************77677777644467889999******76555443......4779*********************** PP

      Syja_N 193 ddeGnvANfvEtEqilevessekeskilSfvqiRGSiPlfWsqeptlkykpkirierseeenleafkkHfekllkrYgkvvvvnLlekkgrEkkLgeay 291
                 d++G+v+Nf EtEq+l ve    +++i+Sf+qiRGS+P++W ++++lkykp + ++++e+++l+a++kHf++l +  g+ ++vnL++ +g+E +++eay
  CCD22538.1 289 DKDGHVSNFNETEQVLVVE----DKSIFSFIQIRGSVPVYWAEINNLKYKPSLVLNEEENSSLDATRKHFSELKSICGENYLVNLVNCHGHELPVKEAY 383
                 *****************74....568******************************99999************************************** PP

      Syja_N 292 ekavkklnklekekkklkyveFDfhkeck 320
                 ekav+ l+     +++lky++FDfh+ec+
  CCD22538.1 384 EKAVNLLD-----DSHLKYIYFDFHHECS 407
                 *******8.....79*************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5117.22
//
Query:       CCD22539.1  [L=261]
Description: hypothetical protein NDAI_0A03820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-50  170.1   0.0    6.4e-50  169.6   0.0    1.2  1  Flavodoxin_2  Flavodoxin-like fold
    1.6e-12   47.5   0.0    3.7e-12   46.2   0.0    1.6  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.6   0.0   7.1e-54   6.4e-50       1     184 [.       8     203 ..       8     216 .. 0.88

  Alignments for each domain:
  == domain 1  score: 169.6 bits;  conditional E-value: 7.1e-54
                   -EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCC.T-----CCCCHC...............CHHHHTT...CHHHHHHHHHHHHCS CS
  Flavodoxin_2   1 mkiLiinahprpeksfssalaqafvealekagphevtvrdLyad.flpvlttrdlaa...............klayeek...padveseqiekllaa 78 
                   +k+Lii+ahp+  +s++++l++a v++le++g  ev+v dLy + +  ++t++d+ +                 a + +   ++dv +eq ekl++a
    CCD22539.1   8 KKVLIIFAHPDR-RSLNGSLLDATVKRLESQG-REVKVSDLYGMnWKSEITEDDFPEthekgtrlkvvseslN-AFQ-HhklTPDVVAEQ-EKLKWA 99 
                   79**********.8******************.9*******************************99885431.333.33535*******.****** PP

                   SEEEEEEE-BTTB--HHHHHHHHHHS-TTTSC.EETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHH.HHHHHHHTT-EEEEEE CS
  Flavodoxin_2  79 daivlqfPlwwfgvPailKgwiDrvltagfaf.yteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpp.lrgilgfiGikdvepv 173
                   d++++qfPlww +vPailKgw++rv++ag a+   +e+  ++ g ++gkk +++vt+Gg + ++++ g  g ++d++l+p  rg+l ++G+++++p+
    CCD22539.1 100 DLVIFQFPLWWGTVPAILKGWVERVFSAGLAYaL-PER--YGNGTFAGKKGMLMVTAGGEKIHFSATGILG-PIDDILFPiQRGMLFYTGMSVLPPF 192
                   ********************************33.333..56899************************99.************************* PP

                   EEESCTCCCHH CS
  Flavodoxin_2 174 lvegvagaede 184
                   + + ++ + de
    CCD22539.1 193 ITYSANYIPDE 203
                   ***98744433 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   4.2e-16   3.7e-12       2     121 ..       9     156 ..       8     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 4.2e-16
                 EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS..--......---HCHGHT...................CGGSHHHHHHHHHHHH-SCE CS
     FMN_red   2 kilvisGSlrkgsntrklaewaaealkeagaevelidladl.ilpc....alcdkdlese...................gqtsddvaellekiaaadal 76 
                 k+l+i++ + ++s +  l+++  + l+ +g ev++ dl ++  +      +++                          ++  +dv +  ek+++ad +
  CCD22539.1   9 KVLIIFAHPDRRSLNGSLLDATVKRLESQGREVKVSDLYGMnWKSEitedDFPE-----ThekgtrlkvvseslnafqhHKLTPDVVAEQEKLKWADLV 102
                 8********************************999999986665455554444.....233446898999999999998888999999********** PP

                 EEEEEECTTCE-HHHHHHHHCHT-..........SSCHCCTT-EEEEEEE-SST CS
     FMN_red  77 iivtPeYngsysgllKnalDrlsr.........trgkkelrgKpvalvavgggr 121
                 i+  P ++g+++++lK   +r+           ++g+  ++gK ++l++++gg+
  CCD22539.1 103 IFQFPLWWGTVPAILKGWVERVFSaglayalpeRYGNGTFAGKKGMLMVTAGGE 156
                 *********************9889*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2063.59
//
Query:       CCD22540.1  [L=312]
Description: hypothetical protein NDAI_0A03830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-44  150.1   6.3    4.6e-17   61.7   0.1    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.1   2.6e-21   4.6e-17       5      92 ..      18     101 ..      14     104 .. 0.94
   2 !   54.2   0.0   5.8e-19     1e-14       9      95 ..     120     201 ..     113     203 .. 0.94
   3 !   36.2   0.7   2.4e-13   4.3e-09       7      93 ..     217     299 ..     213     301 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 2.6e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                 ++k  +aG++++  +++   P+dvvKtr+q+++  ++k    +++  ++ki+ +eG  +l  G++p+ll+++++ a kf+ ye++k+l
  CCD22540.1  18 YFKFAIAGAIGCGSTHSSLVPVDVVKTRIQLEPAVYNK----GMIGSFRKIIADEGAGALMTGFGPTLLGYSVQGAFKFGGYEVFKKL 101
                 677789*****************************987....39******************************************98 PP

  == domain 2  score: 54.2 bits;  conditional E-value: 5.8e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 + ++++a  +a ++ +Pl+  ++rl +q++ ++      +++ +++i+keeG+ ++y G++p l++++p++ +kf+++e   +l++k
  CCD22540.1 120 MGSAAVAEFFADIALCPLEATRIRLVSQPQFANG-----LVSGFSRIMKEEGIGSFYNGFTPILFKQIPYNIAKFLVFERASELYYK 201
                 567899*************************998.....*******************************************99987 PP

  == domain 3  score: 36.2 bits;  conditional E-value: 2.4e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                  +ll+G++ag +a++v +P d++  ++   kk   +s    ++  l ++ k+ G+ g + Gl  +l++v   ++l+f++y +lk++l
  CCD22540.1 217 INLLSGLTAGFAAAIVSQPADTLLSKVNKTKKAPGQS----TIGLLAQLAKQLGFVGSFAGLPTRLVMVGTLTSLQFGIYGSLKKTL 299
                 589*******************999998888887764....899****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2499.48
//
Query:       CCD22541.1  [L=287]
Description: hypothetical protein NDAI_0A03840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-68  228.3   0.0    3.6e-67  225.7   0.0    2.1  2  Ribosomal_S2  Ribosomal protein S2


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.18   3.2e+03     188     212 ..      21      46 ..      15      49 .. 0.75
   2 !  225.7   0.0     2e-71   3.6e-67       1     215 []      79     274 ..      79     274 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.18
  Ribosomal_S2 188 dypIp.aNddsirsiklilgvladai 212
                    + Ip aNd+ +   +l+l+ l +a 
    CCD22541.1  21 PFLIPsANDKPFTKQELYLRQLKHAS 46 
                   56777579999999999999998875 PP

  == domain 2  score: 225.7 bits;  conditional E-value: 2e-71
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIygerngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNfk 97 
                   L++agvh+Gh+t++w+p+++p+Iyge++g+hiidl+ktl++l+ra++v++++a++gg il+ gt +++k+ ++eaakr++gyyv++rW++GtLTN +
    CCD22541.1  79 LMAAGVHLGHSTTLWRPSTQPFIYGEYRGVHIIDLNKTLSYLKRACHVIEGIAQRGGLILYLGTGEGHKRGLEEAAKRTHGYYVSTRWIPGTLTNST 175
                   89*********************************************************************************************** PP

  Ribosomal_S2  98 tikksikklkeleeleedgeldltkkealklkkekekleknlggikkmkklPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIpaN 194
                   +i+++++k + ++        d+++ ++              ++ ++  ++Pdl+vvl+p+++++a++Ea k+++p+iai+Dt+++p+lv+ypIp+N
    CCD22541.1 176 EISRNLEKHE-INGD------DMPTLRE------------LTAEETNIISKPDLLVVLNPTENRNALYEAMKSRVPTIAIIDTDSEPSLVTYPIPGN 253
                   *****88833.4433......3555333............23334566799********************************************** PP

  Ribosomal_S2 195 ddsirsiklilgvladaieeg 215
                   d+s+rs++l+lg+la+a+e+g
    CCD22541.1 254 DNSLRSVNLLLGILAKAGEKG 274
                   *****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2370.74
//
Query:       CCD22542.1  [L=175]
Description: hypothetical protein NDAI_0A03850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1300.62
//
Query:       CCD22543.1  [L=238]
Description: hypothetical protein NDAI_0A03860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-21   73.9   0.2    1.3e-20   73.3   0.2    1.3  1  Ribosomal_L10  Ribosomal protein L10
    7.4e-19   67.5   0.0    1.2e-18   66.9   0.0    1.3  1  RL10P_insert   Insertion domain in 60S ribosomal protein L10P


Domain annotation for each model (and alignments):
>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.2   1.5e-24   1.3e-20       2      98 ..      19     119 ..      18     121 .. 0.95

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 1.5e-24
                    SCCCHCCCCCCCCCCCTTSSEEEEEE-TTS-HHHHHHCCCHHHHHGCEEEEESCCCCCCCCHCCTSS..S.....SCGCCSSSEEEEEESS-TCHH CS
  Ribosomal_L10   2 tkekKeelvkelkellkkyksvvvvdyegltvaqlqelRkklrengaelkvvKntlmrrAleetgeee.k.....lkellkgpvalvftnedpval 91 
                     +e+Ke++++e++e+l++y++v+v  ++++++  lqe+R+++++  ++l ++K++++ +Al+e++eee k     l++l++g+++l+ftne++  +
     CCD22543.1  19 GRENKERIFDEIREALDTYRYVWVLYLDNVRTPVLQEIRTAWAG--SKLIMGKKKVLAKALGEKREEEyKenlskLAKLCTGMTGLLFTNEEVDTV 112
                    699****************************************6..5*******************976689999********************* PP

                    HHCCCCC CS
  Ribosomal_L10  92 akvleef 98 
                    ++++e++
     CCD22543.1 113 KSYFEAY 119
                    ****998 PP

>> RL10P_insert  Insertion domain in 60S ribosomal protein L10P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   1.3e-22   1.2e-18       2      71 .]     126     208 ..     125     208 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 1.3e-22
  RL10P_insert   2 raGtiAtedviipagplela............PgsiepeLr.klglptklkkGkivleedylvckkGetltseqaqlLklLgi 71 
                   r+++ A+ +++ip+g ++++             +s+ep+Lr k+ +ptk+k Gki++++ y vc+kG++l+++qa +Lk++gi
    CCD22543.1 126 RPNSRAPLTFVIPEGIIYSRggqipieddipmVHSLEPTLRnKYEIPTKIKAGKITIDTPYSVCEKGDKLDVRQALILKQFGI 208
                   88999*************************999*************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1752.38
//
Query:       CCD22544.1  [L=895]
Description: hypothetical protein NDAI_0A03870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-71  238.8   0.0    1.5e-70  237.6   0.0    1.7  1  Pkinase         Protein kinase domain
      6e-46  156.8   0.0    1.2e-45  155.8   0.0    1.5  1  Pkinase_Tyr     Protein tyrosine kinase
    1.4e-16   60.6   0.2    5.5e-16   58.7   0.2    2.2  1  PBD             P21-Rho-binding domain
    3.5e-05   22.8   0.0    3.5e-05   22.8   0.0    2.2  3  Pkinase_fungal  Fungal protein kinase
    0.00052   19.4   0.0     0.0018   17.7   0.0    1.9  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
       0.23   11.3   0.0       0.74    9.7   0.0    1.6  2  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.6   0.0   4.9e-74   1.5e-70       1     264 []     613     864 ..     613     864 .. 0.94

  Alignments for each domain:
  == domain 1  score: 237.6 bits;  conditional E-value: 4.9e-74
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 y +l k+G+G+++ Vy a+e  t+  vA+K+i+ ek+  k+   +l+Ei ++kk++hpniv++++++  + +l++++ey+e g+l+d+++ + +l e +
  CCD22544.1 613 YANLVKIGRGGSALVYTAYEVGTNLSVAIKQINLEKQPRKQL--ILNEIIVMKKSQHPNIVNFIDSYLVDGKLWVIMEYMEAGSLTDVVT-RCILREGQ 708
                 567889*****************************9999776..*********************************************7.699***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                 +  +++++l+gl +lHskg+iHrD+K++N+L++ +g++K+tDFG++++l+  +   +++vgt++++APE++++++y +kvD+WslGv+++e++ g+pp+
  CCD22544.1 709 IGAVCREVLKGLVFLHSKGVIHRDIKSDNVLLSMDGDIKLTDFGFCAQLNDIHLkRNTMVGTPYWMAPEIVEKKHYCPKVDIWSLGVMIIEMIEGEPPY 807
                 *************************************************9977669******************************************* PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  +e         l+    ++ i ++ + kl+ ++++se++ ++++ +l +dp+ R ta+ell+h+++
  CCD22544.1 808 LNEP-------PLRA---LYLIATNGTPKLKDPEKLSETLSEFINCCLFVDPELRKTAAELLNHRFI 864
                 *222.......3444...6667777889************************************996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.8   0.0   4.1e-49   1.2e-45       6     257 ..     618     860 ..     614     862 .. 0.92

  Alignments for each domain:
  == domain 1  score: 155.8 bits;  conditional E-value: 4.1e-49
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHH CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlk 103
                  k+G+G  + V+ ++       ++++Va+K+++ e++ + k+ +l+e+ +mkk +hpniv+++  ++ +++l++++ey++ G+L + +++     l+  
   CCD22544.1 618 KIGRGGSALVYTAYEV----GTNLSVAIKQINLEKQPR-KQLILNEIIVMKKSQHPNIVNFIDSYLVDGKLWVIMEYMEAGSLTDVVTRC---ILREG 707
                  7899999999999888....899********8777776.899**********************************************99...99*** PP

                  HHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 104 dllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftl 201
                  ++  ++ +v kG+ +L+sk ++Hrd+ + NvLls +  +k++DfG + ++  +d   k+++      WmapE++++k++  k D+Ws Gv+++E+++ 
   CCD22544.1 708 QIGAVCREVLKGLVFLHSKGVIHRDIKSDNVLLSMDGDIKLTDFGFCAQL--NDIHLKRNTMVGTPYWMAPEIVEKKHYCPKVDIWSLGVMIIEMIE- 802
                  **************************************************..666677777778889*****************************9. PP

                  SSGTTTTSHHHHHHHHH..HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 202 gespypglkneevlekl..kegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  ge py +  + ++l  +  +   +l+ pek +e+l e+++ c+  dpe R t +el++
   CCD22544.1 803 GEPPYLNEPPLRALYLIatNGTPKLKDPEKLSETLSEFINCCLFVDPELRKTAAELLN 860
                  ********9988888885334457***************************9999875 PP

>> PBD  P21-Rho-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.2   1.8e-19   5.5e-16       1      59 []     347     405 ..     347     405 .. 0.99

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 1.8e-19
                 -B---EEEEEEEEEEEETTTTEEES--CCHCCCHHHT.TTSXXXBEXXXXXXXXXXXXX CS
         PBD   1 eIStPtnfkHtvHVGwdgdsgnftglPpewkkllkssgItedelkenpkavlsvdkfrs 59 
                 +IStP++ kH +HV  d ++g+  +lP ew++ l s+gI+++e+++n ++v+++++f++
  CCD22544.1 347 QISTPYDAKHITHVRVDHKTGKLKHLPIEWERTLISNGISKEEQEKNMQTVMDIVQFYQ 405
                 7********************************************************96 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   1.9      0.53   1.6e+03     252     266 ..     235     249 ..     156     334 .. 0.52
   2 ?   -3.9   0.2       1.4   4.3e+03      21      46 ..     395     420 ..     380     471 .. 0.50
   3 !   22.8   0.0   1.2e-08   3.5e-05     311     391 ..     712     783 ..     705     793 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.53
  Pkinase_fungal 252 aevklkksesskkve 266
                     a   l++s+s+k+v+
      CCD22544.1 235 ADKLLNASRSEKTVT 249
                     122222222222221 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.4
  Pkinase_fungal  21 edvlvvgelkkkseeeklkkallqLa 46 
                     + v+ ++++ ++ ++e+ ++++l+L 
      CCD22544.1 395 QTVMDIVQFYQDVTDETEEEKALELF 420
                     33333333333333333333333322 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 1.2e-08
  Pkinase_fungal 311 alrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeH 391
                     ++r+++kg+  L+  +g++HrDi  +N+l+       +    L D+ +  +l+d   + ++++ +GT+++ma e++++ +H
      CCD22544.1 712 VCREVLKGLVFLH-SKGVIHRDIKSDNVLLS-----MDGDIKLTDFGFCAQLND--IHLKRNTMVGTPYWMAPEIVEK-KH 783
                     7899*********.*****************.....788999***********7..5556679*************94.55 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.94   2.8e+03      13      53 ..     612     652 ..     604     658 .. 0.79
   2 !   17.7   0.0   5.9e-07    0.0018     141     243 ..     709     800 ..     644     814 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.94
  Kinase-like  13 tlvrgellkkgdrsvvfevkdqetgeplavkvfllpseask 53 
                  ++     +++g++ +v+ + ++ t+ ++a+k+  l++++ k
   CCD22544.1 612 KYANLVKIGRGGSALVYTAYEVGTNLSVAIKQINLEKQPRK 652
                  45555568999999*****************9998887765 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 5.9e-07
  Kinase-like 141 letiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl..seve.kgfaPpEllgsrggytrknktkmthkldaWq 235
                   + ++r +l          L++kg++h ++++dn+ll  +g ++l++f+   +  +       +v    +  pE++ +          ++  k+d W 
   CCD22544.1 709 IGAVCREVLK-----GLVFLHSKGVIHRDIKSDNVLLSMDGDIKLTDFGFCAQLNDIHLKrnTMVGtPYWMAPEIVEK---------KHYCPKVDIWS 792
                  5555555552.....23469****************************977666655443113343223456677666.........35667899999 PP

  Kinase-like 236 lGlviyri 243
                  lG+ i  +
   CCD22544.1 793 LGVMIIEM 800
                  99999776 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.63   1.9e+03      66      98 ..     679     716 ..     664     725 .. 0.69
   2 ?    9.7   0.0   0.00025      0.74     160     195 ..     720     753 ..     704     755 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.63
                 ETTEEEEEEE----EE-SS.....HHHHHHHHHHHHHH CS
         APH  66 eigllfalieyvpgrsllr.....klsaaqlpelleal 98 
                 + g l++++ey+++ sl++      l + q++++++++
  CCD22544.1 679 VDGKLWVIMEYMEAGSLTDvvtrcILREGQIGAVCREV 716
                 67889***********9997666555555555555555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00025
                 --SSS-EEEE-SS-SGGGEEEC...TTEEEEE---TT CS
         APH 160 lpgelptvllHgDlhpgNllvd.pddgrvtGviDfed 195
                 l    +++++H+D++++N+l+  ++d +   + Df++
  CCD22544.1 720 LVFLHSKGVIHRDIKSDNVLLSmDGDIK---LTDFGF 753
                 33467899**************666555...566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (895 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 5711.13
//
Query:       CCD22545.1  [L=261]
Description: hypothetical protein NDAI_0A03880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-54  183.5   0.0    4.6e-54  183.2   0.0    1.1  1  Flavodoxin_2  Flavodoxin-like fold
      3e-12   46.6   0.0    7.1e-12   45.3   0.0    1.6  1  FMN_red       NADPH-dependent FMN reductase
  ------ inclusion threshold ------
       0.17   11.6   0.3       0.36   10.5   0.3    1.7  1  Flavodoxin_4  Flavodoxin


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.2   0.0   7.6e-58   4.6e-54       1     196 [.       8     214 ..       8     216 .. 0.89

  Alignments for each domain:
  == domain 1  score: 183.2 bits;  conditional E-value: 7.6e-58
                   -EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCC.T-----CCCCHC...............CHHHHTT...CHHHHHHHHHHHHCS CS
  Flavodoxin_2   1 mkiLiinahprpeksfssalaqafvealekagphevtvrdLyad.flpvlttrdlaa...............klayeek...padveseqiekllaa 78 
                   +k+Lii+ahp+  +s++++l++a v++le++g  ev+v dLy + +  ++t++d+ +                 a + +   ++dv +eq ekl++a
    CCD22545.1   8 KKVLIIFAHPDR-RSLNGSLLDATVKRLESQG-REVKVSDLYGMnWKSEITEDDFPEthekgtrlkvvseslN-AFQ-HhklTPDVVAEQ-EKLKWA 99 
                   79**********.8******************.9*******************************99885431.333.33535*******.****** PP

                   SEEEEEEE-BTTB--HHHHHHHHHHS-TTTSC.EETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHH.HHHHHHHTT-EEEEEE CS
  Flavodoxin_2  79 daivlqfPlwwfgvPailKgwiDrvltagfaf.yteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpp.lrgilgfiGikdvepv 173
                   d++++qfPlwwf++PailKgw++rv++ag a+   e+   ++ g+++gkka+v+v+tGg+  +y++ g +g ++d++l+p  +g++ ++G+++++p+
    CCD22545.1 100 DLVIFQFPLWWFSLPAILKGWVERVFSAGLAYcLPER---YGNGAFAGKKAMVMVSTGGSDTHYSATGVNG-PIDDILFPiQHGMMFYTGMSVLPPF 192
                   ********************************55433...4689**************************9.************************* PP

                   EEESCTCCCHHHHHHHHHHHHHH CS
  Flavodoxin_2 174 lvegvagaedeealaealerlee 196
                   + ++++  + +++l+  le l++
    CCD22545.1 193 VTYAADFLA-DDKLDSVLEHLDN 214
                   ****76444.5557777777666 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   1.2e-15   7.1e-12       2     124 ..       9     160 ..       8     164 .. 0.86

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 1.2e-15
                 EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS..--......---HCHGHT...................CGGSHHHHHHHHHHHH-SCE CS
     FMN_red   2 kilvisGSlrkgsntrklaewaaealkeagaevelidladl.ilpc....alcdkdlese...................gqtsddvaellekiaaadal 76 
                 k+l+i++ + ++s +  l+++  + l+ +g ev++ dl ++  +      +++                          ++  +dv +  ek+++ad +
  CCD22545.1   9 KVLIIFAHPDRRSLNGSLLDATVKRLESQGREVKVSDLYGMnWKSEitedDFPE-----ThekgtrlkvvseslnafqhHKLTPDVVAEQEKLKWADLV 102
                 8********************************999999986665455554444.....233446898999999999998888999999********** PP

                 EEEEEECTTCE-HHHHHHHHCHT-..........SSCHCCTT-EEEEE.EE-SSTTTT CS
     FMN_red  77 iivtPeYngsysgllKnalDrlsr.........trgkkelrgKpvalv.avgggrrgg 124
                 i+  P ++ s +++lK   +r+           ++g+ +++gK ++++ ++gg++ + 
  CCD22545.1 103 IFQFPLWWFSLPAILKGWVERVFSaglayclpeRYGNGAFAGKKAMVMvSTGGSDTHY 160
                 *********************9889****************87776664888887765 PP

>> Flavodoxin_4  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3     6e-05      0.36      26     103 ..      44     128 ..      29     174 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6e-05
                   -EEEE--BSS---TGGG-T.T-TTSHHHH..HHT-TT----BS---.S-GGG-...SEEEEEEE-BTTB--HHHHHHHHTS--TT CS
  Flavodoxin_4  26 adlyeikpevpyteadldw.ndkksrssv..emrdalsrpaisgtl.fhpeky...evlfvgfpvwwyiaptiintflesydfag 103
                   +dly ++ +   te d+    +k +r  v  e  +a+ +  ++  +    ek    ++++  fp+ww+  p+i++ ++e    ag
    CCD22545.1  44 SDLYGMNWKSEITEDDFPEtHEKGTRLKVvsESLNAFQHHKLTPDVvAEQEKLkwaDLVIFQFPLWWFSLPAILKGWVERVFSAG 128
                   67777777777777776430344445443224555665555544330344553112567789*************9999766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1859.86
//
Query:       CCD22546.1  [L=249]
Description: hypothetical protein NDAI_0A03890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-36  123.0   0.3    4.3e-36  123.0   0.3    2.0  3  SRP1_TIP1  Seripauperin and TIP1 family


Domain annotation for each model (and alignments):
>> SRP1_TIP1  Seripauperin and TIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.3   2.4e-40   4.3e-36       2      96 ..      15     113 ..      14     116 .. 0.96
   2 ?   -1.1   0.0      0.11     2e+03      37      56 ..     168     188 ..     160     209 .. 0.68
   3 ?   -2.9   0.0       0.4   7.1e+03      53      71 ..     210     228 ..     192     236 .. 0.60

  Alignments for each domain:
  == domain 1  score: 123.0 bits;  conditional E-value: 2.4e-40
   SRP1_TIP1   2 avaaaqteaevaelevllnDvksnlkeYlslaka.nsgfs...lPsgvlsvyaalatatddsYttllseidfaevssmitglPWYssRLepaiesalas 96 
                 ++a+aqt +e++el+vllnDv s+l++Y++la++ +sg++   +P+g+l+v++ala+atddsYttl+se+dfa+v+smit+lPWYssRL pa+esal++
  CCD22546.1  15 TYASAQTPTEITELNVLLNDVGSHLEDYMNLATNpDSGITlqnMPAGMLDVGMALASATDDSYTTLYSEVDFAGVQSMITELPWYSSRLRPALESALDT 113
                 789******************************9999999999****************************************************9975 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.11
   SRP1_TIP1  37 sgfs..lPsgvlsvyaalatat 56 
                 ++ +  +Ps+v++ y +  ta+
  CCD22546.1 168 DTTTspIPSSVTDGYRNS-TAS 188
                 333345999999998876.334 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.4
   SRP1_TIP1  53 atatddsYttllseidfae 71 
                 at++ ++ tt +s+ + ++
  CCD22546.1 210 ATQNHSNSTTTMSTHPANN 228
                 3444455555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       794  (0.0442858); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 1949.86
//
Query:       CCD22547.1  [L=228]
Description: hypothetical protein NDAI_0A03900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-34  117.8   3.1    2.6e-34  117.8   3.1    1.8  3  PEMT      Phospholipid methyltransferase


Domain annotation for each model (and alignments):
>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.85   1.5e+04      39      52 ..      20      33 ..      12      34 .. 0.68
   2 ?   -3.2   0.1      0.61   1.1e+04      75      91 ..      46      62 ..      37      72 .. 0.61
   3 !  117.8   3.1   1.5e-38   2.6e-34       4     105 ..     120     220 ..     118     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.85
        PEMT 39 mdklvtsGiYryln 52
                ++++v++ +Y++ln
  CCD22547.1 20 TSSMVNEIVYSILN 33
                34677777888877 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.61
        PEMT 75 glllallvllvylialk 91
                 +++a+ +l+++++a+ 
  CCD22547.1 46 LFFIAFNPLFWNIVARL 62
                35555556666665554 PP

  == domain 3  score: 117.8 bits;  conditional E-value: 1.5e-38
        PEMT   4 ilGlllialglllvlssiealgefgtfygdfFlelmdklvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylialkfvEephlakiY 102
                 ++G++ i++g++lvlss+++lg++gt++gd+F +lm+++vt+++++++nnP+y+gstl+flG++L++g++ gl+++++v+++y  al+ +Eep++akiY
  CCD22547.1 120 TVGIISIVIGQVLVLSSMYQLGITGTYLGDYFNILMEQRVTGFPFNVTNNPMYHGSTLSFLGTSLYMGKPSGLVITAFVWIMYSTALR-FEEPFTAKIY 217
                 57**************************************************************************************.********** PP

        PEMT 103 gkr 105
                 +kr
  CCD22547.1 218 AKR 220
                 997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1847.40
//
Query:       CCD22548.1  [L=321]
Description: hypothetical protein NDAI_0A03910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-22   79.4   0.0    4.5e-22   79.1   0.0    1.2  1  PAC2      PAC2 family


Domain annotation for each model (and alignments):
>> PAC2  PAC2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0   2.5e-26   4.5e-22       1     152 [.      18     237 ..      18     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 2.5e-26
                 EEEESSCGGGHHHHHHHHHHHHT..TEEEEEEEEHCCHSBCCCC.......SEEEEETTEEE-SEEEEEE.TTT..................SEEEEEE CS
        PAC2   1 LilGfpgiGnVgqlavdlLiesl..eaekvgeidsdyllpfvgp......rpvvlveegrelepprlyak.dsg.................srdllvlq 73 
                 L+l+++++GnV+ql+vdl++++l  + +++  i+s yl+pf gp      +           ++p ly + +++                 s+++++lq
  CCD22548.1  18 LLLPLVSTGNVPQLSVDLMLHTLapQYQFIKDIHSNYLHPFLGPldysidQ-----------SKPILYEEfNNNnnntkkfssnlelfynkSKNFYILQ 105
                 799********************88888****************5544331...........345555555333456667777788888889******* PP

                 EE-HSCHHH..HHHHH.HHHHHHHTTESEEEEEEEEEESS-.......................................................... CS
        PAC2  74 grepilqye..efaka.lldwaeelgvkevvvLggldager.......................................................... 111
                 +r+pi+q++  +f k+ +++++  l+vk++++L+++++ +                                                           
  CCD22548.1 106 QRTPIIQGYlnNFFKEiIIPLLTNLNVKTIIILDSFGSFDDsfphainhnhrvlpsssnevyslgscnlnninelsstfdsimnlnnnnntnnhnnyds 204
                 *************************************99889999998888888888888888888888888888888888888888887777766665 PP

                 ...ES..TTS-.EEEEEESSHHHHHHHHCT-CEEEEHHHHHHHH CS
        PAC2 112 ...advphtrpekvtgaatdeelleeleeseyggivgitglLls 152
                     d ++++++++++++++++ +           ++i+++L++
  CCD22548.1 205 nfgIDWFKFTEDSIQQEISTNQDI-----------FKIAYHLIN 237
                 554333666667777777777766...........777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2250.17
//
Query:       CCD22549.1  [L=191]
Description: hypothetical protein NDAI_0A03920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1533.33
//
Query:       CCD22550.1  [L=714]
Description: hypothetical protein NDAI_0A03930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2813  (0.156897); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.39u 0.33s 00:00:01.72 Elapsed: 00:00:00.52
# Mc/sec: 4162.71
//
Query:       CCD22551.1  [L=354]
Description: hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-17   62.0   0.0    1.5e-16   61.0   0.0    1.6  1  AAA              ATPase family associated with various cellul
    3.8e-15   56.0   0.0    9.1e-15   54.8   0.0    1.7  1  Rep_fac_C        Replication factor C C-terminal domain
    1.5e-13   50.9   0.0    8.1e-12   45.2   0.0    2.4  1  DNA_pol3_delta2  DNA polymerase III, delta subunit
    3.6e-08   33.6   0.2      1e-07   32.1   0.0    1.9  2  Rad17            Rad17 P-loop domain
    1.4e-05   25.3   0.0    4.3e-05   23.8   0.0    1.9  1  AAA_assoc_2      AAA C-terminal domain
    1.6e-05   24.7   0.0    4.5e-05   23.2   0.0    1.8  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    4.2e-05   23.8   0.0    0.00054   20.3   0.0    2.3  1  AAA_22           AAA domain
    4.5e-05   23.4   0.0     0.0001   22.2   0.0    1.6  1  AAA_11           AAA domain
    8.7e-05   23.0   0.0     0.0044   17.4   0.0    2.6  3  AAA_16           AAA ATPase domain
    0.00024   21.2   0.0    0.00078   19.5   0.0    2.0  1  AAA_14           AAA domain
    0.00094   18.6   0.0      0.017   14.5   0.0    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0033   17.8   0.0      0.011   16.1   0.0    2.2  1  AAA_19           AAA domain
     0.0034   17.1   0.0      0.011   15.5   0.0    1.8  2  AAA_30           AAA domain
     0.0036   16.5   0.0     0.0057   15.8   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
     0.0043   16.6   0.0       0.01   15.3   0.0    1.6  2  AAA_7            P-loop containing dynein motor region
     0.0071   16.7   0.0       0.24   11.8   0.0    2.6  2  RNA_helicase     RNA helicase
     0.0078   16.0   0.0      0.028   14.2   0.0    1.9  1  AAA_24           AAA domain
      0.009   16.0   0.0      0.048   13.7   0.0    2.0  2  ResIII           Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.015   15.3   0.3       0.13   12.3   0.1    2.4  2  AAA_5            AAA domain (dynein-related subfamily)
      0.028   15.0   0.0      0.081   13.5   0.0    1.9  1  AAA_18           AAA domain
      0.029   14.2   0.0       0.24   11.3   0.0    2.2  1  AAA_3            ATPase family associated with various cellul
       0.03   14.8   0.0      0.052   14.0   0.0    1.7  1  AAA_23           AAA domain
      0.036   13.3   0.0       0.12   11.5   0.0    1.9  2  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.048   13.9   0.0      0.076   13.2   0.0    1.4  1  AAA_28           AAA domain
      0.055   13.6   0.6       0.85    9.7   0.1    2.8  3  DUF1938          Domain of unknown function (DUF1938)
      0.057   13.6   0.1       0.14   12.3   0.1    1.7  1  TIP49_C          TIP49 AAA-lid domain
       0.13   12.2   0.0       0.33   10.9   0.0    1.7  1  DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau do


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   2.3e-19   1.5e-16       1     130 [.      63     192 ..      63     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 2.3e-19
                 EEEESSTTSSHHHHHHHHHHHH......THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS.......TS.EEEEEETGGGHHHHHTTCCCHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel......gvefleisgsell.skyvgesekkirelfkeakeka.......kp.silfiDEidalaksrsgseseeeer 84 
                 +l+yGppGtGKT+++ a+akel      ++++le+++s+ +  ++v e+ k+++ l  +  +k+        p +i+++DE+d+++ +           
  CCD22551.1  63 MLFYGPPGTGKTSTILALAKELygpelmKSRILELNASDERgISIVREKVKNFARLTVSKPSKNdlenypcPPyKIIILDEADSMTADA---------- 151
                 89*******************6555444899**********77799999999888776654444799***8778***********9888.......... PP

                 HHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEET CS
         AAA  85 vvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkiei 130
                  +++L + ++ ++     + +++++n++ ++ ++l  +R+++  + 
  CCD22551.1 152 -QSALRRTMETYSGV---TRFCLICNYVTRIIDPLA-SRCSKFRFK 192
                 .*************4...78****************.999887665 PP

>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   1.4e-17   9.1e-15       2      87 ..     265     349 ..     264     350 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 1.4e-17
                 -HHHHHHHHHHHHHT-HHHHHHHHHHHHHHC---HHHHHHHHHHHGCCS..S-HHHHHHHHHHHHHHHHHHHCTH-HHHHHHHHHH CS
   Rep_fac_C   2 hpteieeileaclngdfeeaykklrellvekGysaediltqlhrvvkeqeelpeaqkleilellgeiekrlveGasehlqlsalla 87 
                 ++++ + +++++ ++d++e  + ++ + ++ G+sa+ +++qlh+++++++e++ + k+++   l e++ +l++G++eh+ql++ll 
  CCD22551.1 265 PDDVFQVVIDKVSKNDVNETIEYVN-EFIKSGWSAASVINQLHDYYITNDEFNSDFKNKVSLILFEMDSKLANGTNEHIQLLNLLV 349
                 66777888999978**********6.***********************99**********99*********************96 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   1.2e-14   8.1e-12       2     162 ..      44     194 ..      43     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1.2e-14
  DNA_pol3_delta2   2 qeealkilskalksgrlahayLfeGdegigkkelalnlakallceeknetkpcgecksckkieqgkhpDvivieteekersikldqirelieel 95 
                      q +a+++l+k l+s +l h +Lf+G+ g+gk ++ l+lak+l   e  ++        + +++  +   + +++++ k  +    ++ +  ++ 
       CCD22551.1  44 QGHAVSVLKKTLQSANLPH-MLFYGPPGTGKTSTILALAKELYGPELMKS-------RILELNASDERGISIVREKVK--NFARLTVSKPSKND 127
                      5678999***********9.79*********************9999866.......455555555555566655555..55555666555444 PP

  DNA_pol3_delta2  96 srkpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                       ++     +kiii+++a+ mt+ A+ al +t+E  s  + f Li +  +++++++ SRc +++f+pl
       CCD22551.1 128 LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPL 194
                      444445789********************************************************97 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.5e-10     1e-07       5      69 ..      25      84 ..      21     171 .. 0.90
   2 ?   -1.4   0.0       2.8   1.9e+03      62      81 ..     273     292 ..     236     350 .. 0.64

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 1.5e-10
       Rad17  5 enelWfekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLskel 69
                + ++W+eky+P++++++    + ++ +k+ l++  L++      L  GP+G gk+ ++  L+kel
  CCD22551.1 25 QSKPWVEKYRPKQLDDITAQGHAVSVLKKTLQSANLPHM-----LFYGPPGTGKTSTILALAKEL 84
                6789*********************************98.....99*****************97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.8
       Rad17  62 vkvLskelgiklrewlnpvs 81 
                 +  +sk+ + + +e++n   
  CCD22551.1 273 IDKVSKNDVNETIEYVNEFI 292
                 45555555555555555543 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   6.4e-08   4.3e-05       3      55 ..     210     261 ..     208     279 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 6.4e-08
                  X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX CS
  AAA_assoc_2   3 kklkleddalealaeladGDaRkaLnlLElaaeaaeakegkieitledleeal 55 
                  ++++++dd+++ ++++++GD R+a++lL+ a +     +g++++t++ ++e++
   CCD22551.1 210 ESVQYDDDVMKCILDISEGDLRRAITLLQSASKRILY-TGEKQVTSASVKELA 261
                  6799*************************99998876.899999999999875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   6.8e-08   4.5e-05       2      58 ..      34      85 ..      33      97 .. 0.90
   2 ?   -3.2   0.0       9.3   6.2e+03      86     111 ..     137     162 ..     135     163 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 6.8e-08
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelg 58
                rPk+l++ ++q +  + lk ++++a     +l h+l+yGpPG Gkt+    +akel 
  CCD22551.1 34 RPKQLDDITAQGHAVSVLKKTLQSA-----NLPHMLFYGPPGTGKTSTILALAKELY 85
                9***********9999999999887.....589**************9999999985 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9.3
      RuvB_N  86 dvlfideihrlsraveevlysamedf 111
                 +++ +de   ++  ++  l  +me +
  CCD22551.1 137 KIIILDEADSMTADAQSALRRTMETY 162
                 57889999999999999999999977 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   8.1e-07   0.00054       7     117 ..      62     160 ..      59     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 8.1e-07
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrs 105
                 +++ +G++GtGKT ++  l+++l   + +e +++++++ +++ + + + +++++ ++  l  ++         + le++    ++  ++i+DEa+ + +
  CCD22551.1  62 HMLFYGPPGTGKTSTILALAKEL---YGPELMKSRILELNASDERGISIVREKVKNFARLTVSK------PSKNDLENYPCPPYK--IIILDEADSM-T 148
                 6789******************9...55555999999999999998888888888888864444......444666666666666..99*******9.8 PP

      AAA_22 106 eealeeLrslln 117
                 ++a + Lr+ ++
  CCD22551.1 149 ADAQSALRRTME 160
                 888888877776 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.6e-07    0.0001      12      43 ..      53      92 ..      42     131 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.6e-07
      AAA_11 12 salsese..itliqGPPGtgKTktivellsqll......s 43
                ++l++ +    l+ GPPGtgKT+ti++l ++l+      s
  CCD22551.1 53 KTLQSANlpHMLFYGPPGTGKTSTILALAKELYgpelmkS 92
                444444444589*******************965544431 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.6e-06    0.0044      16      49 ..      51      85 ..      43      94 .. 0.80
   2 ?    2.0   0.0      0.36   2.4e+02     137     161 ..     137     161 ..      93     171 .. 0.73
   3 ?   -1.8   0.0       5.4   3.6e+03      85     125 ..     234     274 ..     202     285 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.6e-06
      AAA_16 16 lervrsgrp.elvllsGesGvGKsslvrellrale 49
                l+++ ++   + +l++G++G+GK+s + +l+++l 
  CCD22551.1 51 LKKTLQSANlPHMLFYGPPGTGKTSTILALAKELY 85
                554444544599***************99998875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.36
      AAA_16 137 lvlvlDdlqwadeaslqllaaLlrl 161
                  +++lD+++   ++ +++l+ ++++
  CCD22551.1 137 KIIILDEADSMTADAQSALRRTMET 161
                 689******9999999999988775 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 5.4
      AAA_16  85 lldeaesaeleawrekleealaavpelagaeasrllellkr 125
                 +   ++++++  +  + + + a+v+elag ++ ++++++ +
  CCD22551.1 234 ITLLQSASKRILYTGEKQVTSASVKELAGVIPDDVFQVVID 274
                 33332233333333333333346888888877777766655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.2e-06   0.00078       6      91 ..      64     163 ..      59     197 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.2e-06
      AAA_14   6 vitGaRrvGKTtllkqlikell...vkkesilyinldderdkkladpe..kllelilek.lke.......ekktylflDEiqev.pewekalkslvdeg 90 
                 +  G+  +GKT  +  l+kel+     k++il++n  der  ++  ++  ++ +l  +k  k+       +  ++++lDE+  +  ++++al++ ++++
  CCD22551.1  64 LFYGPPGTGKTSTILALAKELYgpeLMKSRILELNASDERGISIVREKvkNFARLTVSKpSKNdlenypcPPYKIIILDEADSMtADAQSALRRTMETY 162
                 5679999******************999**********9995544332224455555553222666787867788******866278999999999977 PP

      AAA_14  91 k 91 
                 +
  CCD22551.1 163 S 163
                 4 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.6e-05     0.017       2      59 ..      38      99 ..      37     124 .. 0.72
   2 ?    1.8   0.0       0.2   1.3e+02     109     133 ..     138     162 ..     136     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.6e-05
  Mg_chelatase  2 lkdvkGqeeakrale..iaaaGgHnlllvGppGsGKtmlakrlpsll..pplseeealevak 59
                  l d++ q +a  +l+  +  a   ++l++GppG+GKt  + +l++ l  p+l ++ +le ++
    CCD22551.1 38 LDDITAQGHAVSVLKktLQSANLPHMLFYGPPGTGKTSTILALAKELygPELMKSRILELNA 99
                  5677777777777752355677789***********86655555443347888888888765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.2
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledg 133
                   +++LDE+  +++++  +LR+ +e+ 
    CCD22551.1 138 IIILDEADSMTADAQSALRRTMETY 162
                   689******************9975 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.6e-05     0.011       8      62 ..      58     112 ..      51     325 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.6e-05
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerl 62 
                 ++ +++l  ++pGtGKT ++ +  ++l   + +k + + l a  +r  + +re++
  CCD22551.1  58 ANLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRILELNASDERGISIVREKV 112
                 56678999**************999998888777666666677777777777777 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.6e-05     0.011      21     114 ..      63     161 ..      41     169 .. 0.69
   2 ?   -2.4   0.0       5.1   3.4e+03     160     184 ..     216     240 ..     200     251 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-05
      AAA_30  21 avltGpAGtGKttalkal.reaweaa..ggrvi.glAptgkaAkvLaeelg.ieastiakllkrlk.grarlepgtllivDEagmvdtkqlaallkaae 113
                 ++  Gp+GtGKt ++ al +e++  +  + r++ + A+ ++    ++e++  ++  t+ k  k+ + +   + p +++i DEa  + ++   al + +e
  CCD22551.1  63 MLFYGPPGTGKTSTILALaKELYGPElmKSRILeLNASDERGISIVREKVKnFARLTVSKPSKN-DlENYPCPPYKIIILDEADSMTADAQSALRRTME 160
                 5678*******97766664899988853345542667777777778888773344455555544.3566778888********9998888888877777 PP

      AAA_30 114 k 114
                 +
  CCD22551.1 161 T 161
                 6 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.1
      AAA_30 160 seeraaalalregdaeealealadr 184
                 ++  +  l+++egd ++a+  l++ 
  CCD22551.1 216 DDVMKCILDISEGDLRRAITLLQSA 240
                 5566667788888888777776654 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   8.6e-06    0.0057      24     104 ..      32     114 ..      12     120 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.6e-06
      DUF815  24 evklddLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeeg...Lrlievekedlkelpklvellre 104
                 + + ++L +i +q +a+ +  ++ l+ ++  ++L++G  GtGK s++ al +e+   +    r++e++ +d + ++ + e++++
  CCD22551.1  32 KYRPKQLDDITAQGHAV-SVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKELYGPElmkSRILELNASDERGISIVREKVKN 114
                 55566666666666654.3456667888889**********************9998844448999888887777777777765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.6e-05      0.01      29      71 ..      55      99 ..      42     112 .. 0.74
   2 ?   -3.0   0.0       6.6   4.4e+03      27      60 ..     235     267 ..     230     290 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-05
       AAA_7 29 llknk.kpvllvGptGtGKtviikdllkkld.kekylsltinfsa 71
                l +++  ++l++Gp GtGKt++i  l k+l  +e ++s +++++a
  CCD22551.1 55 LQSANlPHMLFYGPPGTGKTSTILALAKELYgPELMKSRILELNA 99
                4444414799***************99998745666666666655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.6
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkldke 60 
                 +ll +++k +l++G++ +  ++ +k+l   ++++
  CCD22551.1 235 TLLQSASKRILYTGEKQV-TSASVKELAGVIPDD 267
                 566677778888887743.355555555555544 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00036      0.24       2      24 ..      64      86 ..      63     153 .. 0.87
   2 ?    2.3   0.0      0.34   2.2e+02      45      79 ..     255     290 ..     229     294 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00036
  RNA_helicase  2 wlyGpsgeGKStlakeLakallk 24
                  ++yGp+g+GK++++  Lak+l +
    CCD22551.1 64 LFYGPPGTGKTSTILALAKELYG 86
                  79****************99974 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.34
  RNA_helicase  45 dgYtgqevvvidDfgqvkdee.npsdlaelirlvss 79 
                    + ++ + v+ dD+ qv+ ++ +++d++e i+ v+ 
    CCD22551.1 255 ASVKELAGVIPDDVFQVVIDKvSKNDVNETIEYVNE 290
                   45556667899*******8887999******99986 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   4.1e-05     0.028       5      83 ..      63     153 ..      60     165 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.1e-05
      AAA_24   5 iliyGpsgiGKTtlakel..........gpkplfidt..ekGlksldadkfpdieswedfldevvel.......aaeladyktlviDtideleelcla 83 
                 +l yGp+g+GKT++++ l          + ++l ++   e+G  s+   k+++   ++                +   ++yk++++D +d +   +  
  CCD22551.1  63 MLFYGPPGTGKTSTILALakelygpelmKSRILELNAsdERGI-SIVREKVKNFARLTVS------KpskndleNYPCPPYKIIILDEADSMTADAQS 153
                 789************9997776766655555555543112233.4444444433333333......24444434445567888888888877666655 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   7.2e-05     0.048       7      49 ..      43      85 ..      38      95 .. 0.90
   2 ?   -1.1   0.0       2.5   1.7e+03     123     147 ..     126     150 ..      88     169 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 7.2e-05
                HHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH- CS
      ResIII  7 yQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierll 49
                 Q +a+  l+++l+s +  ++l+  + GtGKT ++++l+++l+
  CCD22551.1 43 AQGHAVSVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKELY 85
                5888999999999999999********************9987 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.5
                 ....HHHTTT-SEEEEETGGGTTS. CS
      ResIII 123 eeseellrdrfdviiiDEaHrlgak 147
                 ++ e +    +++ii DEa  ++a+
  CCD22551.1 126 NDLENYPCPPYKIIILDEADSMTAD 150
                 3333334444459999999777764 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00019      0.13       1      85 [.      62     155 ..      62     163 .. 0.56
   2 ?   -2.6   0.0       7.5     5e+03      65      78 ..     209     222 ..     199     273 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00019
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.........G-SEEEEESGGG--HHHHHHH CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.........egeilvlDEveraesevlnsL 85 
                 ++l  GppGtgK++ +  la+ l  + +++     ++++d +g   ++++ + +    + +  +           +i++lDE + +  +++++L
  CCD22551.1  62 HMLFYGPPGTGKTSTILALAKELYGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKndlenypcpPYKIIILDEADSMTADAQSAL 155
                 6899************999998844444444444444444444444332222222222222222444466666666666666666666666666 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.5
                 G-SEEEEESGGG-- CS
       AAA_5  65 egeilvlDEverae 78 
                 e ++ ++D+v ++ 
  CCD22551.1 209 EESVQYDDDVMKCI 222
                 55555555555543 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   0.00012     0.081       3      39 ..      65      96 ..      64     179 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00012
      AAA_18  3 ltGtpGvGKttlakeLskrlgf......gvnlrdvakenglll 39
                  G+pG+GKt+   +L+k+l +      +          ++l+
  CCD22551.1 65 FYGPPGTGKTSTILALAKEL-YgpelmkS----------RILE 96
                57****************98.32344441..........3333 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00035      0.24       1      87 [.      62     160 ..      62     168 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00035
       AAA_3   1 hvllegvPGlaktllvkalakal...dlefkriqftpdllPsdilGtevfeeke.............kefefkkGpvfanllladeinrappktqsall 83 
                 h+l+ g PG++kt ++ alak l   +l  +ri    +l  sd  G+++++ek              +++e  + p   ++++ de +  ++ +qsal 
  CCD22551.1  62 HMLFYGPPGTGKTSTILALAKELygpELMKSRI---LELNASDERGISIVREKVknfarltvskpskNDLENYPCPP-YKIIILDEADSMTADAQSALR 156
                 999******************993222333444...57888888888888887734444444444223333333343.357777888888888888888 PP

       AAA_3  84 eame 87 
                  +me
  CCD22551.1 157 RTME 160
                 8887 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   7.8e-05     0.052      22      87 ..      63     144 ..      52     348 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.8e-05
      AAA_23  22 tlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdve...iesegkvkayveltfenkdgry................t 87 
                  l++Gp G+GKT+ + A+   Lyg  p+l +++   ++ sd +   i   +kvk++++lt+++ ++ +                 
  CCD22551.1  63 MLFYGPPGTGKTSTILALAKELYG--PELMKSRILELNASDERgisIVR-EKVKNFARLTVSKPSKNDlenypcppykiiildeA 144
                 69**********************..66666653333333333211333.68899999998876665455656665554444440 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.6   4.4e+03     101     127 ..      23      50 ..      21      51 .. 0.78
   2 ?   11.5   0.0   0.00019      0.12       7     106 ..      66     153 ..      62     166 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.6
     DUF2075 101 ltksdqaekqseenqlkelmkr.akvvv 127
                 l++s++  +++ ++ql+++ ++   v+v
  CCD22551.1  23 LHQSKPWVEKYRPKQLDDITAQgHAVSV 50 
                 6788889999999999999998555766 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00019
     DUF2075   7 tGvaGtGKtvvllnllaeleddeeertavylsvNhpl..vlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrlltk 103
                  G +GtGKt   l+l+ el   e+ +++++ +   ++  + ++re++++ +     + +++k+s+  n+l+       + + p+ +++i DEA  ++  
  CCD22551.1  66 YGPPGTGKTSTILALAKELYGPELMKSRILELNASDErgISIVREKVKNFA-----RLTVSKPSK--NDLE-------NYPCPPYKIIILDEADSMTAD 150
                 799****************77777766666666555511457888886555.....444444443..3333.......5679***********999885 PP

     DUF2075 104 sdq 106
                 +++
  CCD22551.1 151 AQS 153
                 544 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00012     0.076       3      23 ..      64      86 ..      62     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00012
      AAA_28  3 vitGgestGKTtlleaLaar..g 23
                 + G+++tGKT+++ aLa++  g
  CCD22551.1 64 LFYGPPGTGKTSTILALAKElyG 86
                689***************76443 PP

>> DUF1938  Domain of unknown function (DUF1938)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0         1   6.7e+02      28      54 ..      81     107 ..      70     116 .. 0.72
   2 ?    9.7   0.1    0.0013      0.85      21      87 ..     215     286 ..     209     288 .. 0.71
   3 ?   -2.0   0.0         6     4e+03      61      73 ..     315     327 ..     310     337 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1
                 EEESSHHHHHH.HHHHHHHHHHHT--- CS
     DUF1938  28 ifaidegelikhripdlieflekrlsk 54 
                 +  +  +el+k ri +l    e+ +s+
  CCD22551.1  81 AKELYGPELMKSRILELNASDERGISI 107
                 5556679*******9997666655665 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0013
                 SSSEEEEEEESSHHHHHH.HHHHHHHHHHHT.-......-----B--..-SHHHHHHHHHTTSS-GGGGGG..G CS
     DUF1938  21 edkvfGiifaidegelikhripdlieflekr.l......skklevkegnsdysekvfkvliGkldneealefie 87 
                 +d v+  i+ i eg+l +    +l++   kr l        +  vke     ++ vf+v+i k++ +++ e ie
  CCD22551.1 215 DDDVMKCILDISEGDLRR--AITLLQSASKRiLytgekqVTSASVKELAGVIPDDVFQVVIDKVSKNDVNETIE 286
                 566777777777777644..55666666666322221113467899999999***************9999888 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 6
                 ..-SHHHHHHHHH CS
     DUF1938  61 gnsdysekvfkvl 73 
                  nsd+ +kv  +l
  CCD22551.1 315 FNSDFKNKVSLIL 327
                 5788888876554 PP

>> TIP49_C  TIP49 AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00022      0.14       6      60 ..     207     260 ..     203     266 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00022
     TIP49_C   6 akeEgvkldeeAldlLakigtetSLRYaiqLltpasilakkrkkkevevedveev 60 
                 a eE v+ d++ ++ + +i++   LR ai Ll+ as      ++k+v+   v+e 
  CCD22551.1 207 AREESVQYDDDVMKCILDISE-GDLRRAITLLQSASKRILYTGEKQVTSASVKEL 260
                 789****************86.57************************9999986 PP

>> DNA_pol3_gamma3  DNA polymerase III subunits gamma and tau domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0005      0.33       1      57 [.     252     308 ..     252     314 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0005
  DNA_pol3_gamma3   1 vsaaqVrdmLGladrarlldlleallegdaaaalaelreqyaaGadpvvvlrdLlel 57 
                      v+ a+V+++ G++  + +  +++++ + d+++ ++ ++e +++G  +++v+++L ++
       CCD22551.1 252 VTSASVKELAGVIPDDVFQVVIDKVSKNDVNETIEYVNEFIKSGWSAASVINQLHDY 308
                      78999*************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 2447.61
//
Query:       CCD22552.1  [L=148]
Description: hypothetical protein NDAI_0A03950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-13   48.1   0.0      1e-12   47.5   0.0    1.3  1  Yae1_N    Essential protein Yae1, N terminal


Domain annotation for each model (and alignments):
>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   5.8e-17     1e-12       1      39 []      36      74 ..      36      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 5.8e-17
      Yae1_N  1 GYreGiaeGkeqglqeGfdeGyqeGaqlGlelGqilGvl 39
                GY++Gi ++ke +lq+Gf+ G+++Ga lG+++G i G+l
  CCD22552.1 36 GYLDGIVSSKEVNLQQGFNAGFPTGALLGVRVGNIIGRL 74
                9************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       917  (0.0511462); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1102.96
//
Query:       CCD22553.1  [L=2445]
Description: hypothetical protein NDAI_0A03960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.9e-120  401.2   5.5   7.5e-120  400.3   5.5    1.5  1  FAT             FAT domain
    2.9e-70  236.9   1.6    4.1e-70  236.4   0.1    2.1  3  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    6.4e-62  208.2  14.3    1.2e-57  194.3   1.3    4.2  3  DUF3385         Domain of unknown function (DUF3385)
    1.4e-39  134.5   6.3    5.9e-39  132.5   2.8    3.0  2  FRB_dom         FKBP12-rapamycin binding domain
    4.4e-16   58.4   0.1    1.1e-15   57.2   0.1    1.7  1  FATC            FATC domain
    6.2e-11   41.6   0.6      0.035   14.3   0.0    8.6  8  HEAT            HEAT repeat
    1.1e-09   38.5   2.1      0.034   14.6   0.0    6.5  6  HEAT_2          HEAT repeats
     0.0011   19.4   6.5        5.7    7.6   0.0    7.6  9  HEAT_EZ         HEAT-like repeat
     0.0042   16.7  15.7       0.09   12.3   0.1    5.2  5  CLASP_N         CLASP N terminal
  ------ inclusion threshold ------
      0.027   15.1  15.9        1.1    9.9   0.0    6.0  6  Vac14_Fab1_bd   Vacuolar 14 Fab1-binding region
      0.065   13.1   0.0         18    5.3   0.0    4.0  2  DUF3437         Domain of unknown function (DUF3437)
       0.25   11.0   5.9        1.3    8.7   0.3    3.7  3  DUF3453         Domain of unknown function (DUF3453)


Domain annotation for each model (and alignments):
>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.3   5.5    5e-123  7.5e-120       1     346 []    1445    1820 ..    1445    1820 .. 0.97

  Alignments for each domain:
  == domain 1  score: 400.3 bits;  conditional E-value: 5e-123
                  CCCTTCCCCTSSSGHHCCCCT....TSSSS--CCCHCCCCHH--CCHCHHCCCHCCCCCCCCCTS---SCCCCCHHHHHCCCCCHHHCHHCCHHCSS CS
         FAT    1 aplaaeaaWrlgqWdsmeeylsvlkkdspdkaffeailalhrnqfdeakeliekarqlldtelsalvgesynraygvlvrvQmlaEleeiiqykqkl 97  
                  ap+aa aaW+lg Wd++e y + lkk +p+++ff ++l++  n+f +a++ i  ar+ll+telsal +esy ray+v+vr QmlaEl eiiqyk+++
  CCD22553.1 1445 APYAAGAAWSLGRWDQLELYSNILKKITPNREFFVCYLKFTSNNFASAEQNIFTARDLLVTELSALINESYARAYNVVVRTQMLAELDEIIQYKRAP 1541
                  699********************************************************************************************** PP

                  ----TTTTTTT----TTS-TTTGCCCTTTCCCCTCCCHCCCHCHCCS-STTCCCCCCCCHCHHHHCCSTTHHCCCCCHCTT.....TT.TSSCCCHH CS
         FAT   98 ssseklksllktWrkRlpgcqdnvevwqdiltvRslvlspiedllkgvkaemwlkfanlarksgrlslAekaLkelleedpeewlprappevvyayl 194 
                   +s+k+++l++tW kRl+g+q+++++wq+ l++Rslv++p++d      + mw+kfanl+r+s+++ lA+kaL+ lle   ++++ +app+vvya+l
  CCD22553.1 1542 VNSNKRAILRQTWDKRLLGSQKSIDIWQRALRIRSLVIKPKQD------MMMWIKFANLCRRSNKMILAQKALNLLLEDGGDPSNAKAPPPVVYAQL 1632
                  *******************************************......****************************999999999*********** PP

                  HHHHHCCHHHHHSSCCHHHHCCTSSCCCSS-SS---...................HHHHCCCTCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCC CS
         FAT  195 KylwssgeqkealqkLreftsellekkeelqsgleaq.......keptnleeftkllarcylkkGewqealqkldwseekieeilqsysaateidps 284 
                  K+lw+ g +keal +L  fts+++++ +  +s+l+aq        + +++ee+tkllarc+lk+Gew++ lq  +w++e++++il sy++at++d++
  CCD22553.1 1633 KFLWAGGAKKEALRHLIGFTSRMAQDLGLDPSNLIAQkipqstpVSHSHVEEYTKLLARCFLKQGEWRTCLQP-SWRQENPDAILGSYLLATHFDKN 1728
                  ****************************9999999999**999999***************************.9********************** PP

                  CHSTTCCCCHHHHHCCHHHHHH.SSSS...............................S-TCCHHHHCCT..CCHHHHTTTSSTTTCHHHHHC CS
         FAT  285 wykawhtwalfnfevvskeeeq.keeee..............................pedlqeyvvpavkgflksislssenslqdtlRLLt 346 
                  wykawh+wal+nfev+s  ++q k e +                               e +q++vvpa+ gf++si+l + nslqdtlRLLt
  CCD22553.1 1729 WYKAWHNWALANFEVISVKTSQiK-EAQenklnetrgadenllmeqsinanieenqysTELIQRHVVPAIIGFFHSIALLEANSLQDTLRLLT 1820
                  *********************962.4334678999****************999999656666*****************************8 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       7.4   1.1e+04      57     110 ..      54     108 ..      47     117 .. 0.66
   2 ?   -3.4   0.0       4.6   6.8e+03      12      31 ..     547     566 ..     544     573 .. 0.83
   3 !  236.4   0.1   2.7e-73   4.1e-70       2     248 ..    2094    2341 ..    2093    2343 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 7.4
                     EE--TTEEEHHHHHHHHHHHCTTSTCHHHHHHHHHCHCHCCHHHHHCC...HHHHHH CS
  PI3_PI4_kinase  57 ielvassetaaslldeklekkgvpptasveslrvaldkkklkkekklk...fekrta 110
                     ie ++ s ++++ll++ ++  + +++a   + +++l ++ l++e++++   ++++++
      CCD22553.1  54 IEIGEESRIIDQLLEKLKSP-KPTDKALATY-EFKLVMSALNRESSVEqltKFNNIL 108
                     78888888888888887755.3333333333.5566888888888887776555444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.6
                     HHHHHHHHHHHHHHHHHHHH CS
  PI3_PI4_kinase  12 lrqdelivqvfklmdeelsk 31 
                     + +d+l++q fk+++e  ++
      CCD22553.1 547 MNDDKLVIQTFKILNETTYE 566
                     56899**********98775 PP

  == domain 3  score: 236.4 bits;  conditional E-value: 2.7e-73
                      EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHH.HHHHCH CS
  PI3_PI4_kinase    2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasves.lrvald 93  
                      + +++k+++d rqd+l++q+f+l++++l+++ ++ +r+l +++y +ipl++k+g++++v +s+t++ l++e++e+k++p ++++ + l++a+d
      CCD22553.1 2094 YRYVLKGHEDIRQDSLVMQLFGLVNTLLQNDTECFQRHLDIQRYPAIPLSPKSGLLGWVRNSDTFHMLIKEHREAKKIPLNIEHWAmLQMAPD 2186
                      67889********************************************************************************99****** PP

                      CHCCHHHHHCC.HHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHC CS
  PI3_PI4_kinase   94 kkklkkekklk.fekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewk 185 
                      +++l++++k++ f+   +++  ++  + ++ ks s e+wle+r+ ++rsla++s+++yilg+gDRh++N+++d+ +gk+ihIDfG++++ +  
      CCD22553.1 2187 YDNLTLLEKIEvFSYSLQNTKGQDFQKVLWLKSRSSETWLERRTMYTRSLAVMSMVGYILGLGDRHPSNLMLDRITGKVIHIDFGDCFEAAIL 2279
                      ***********888888888999********************************************************************** PP

                      SSSS-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSS CS
  PI3_PI4_kinase  186 llpfpqekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglilw 248 
                      + +fp ekvPfrltr+l +a++ s+ eg fr + e+++++lr +++ l+++l++++ d+li+w
      CCD22553.1 2280 REKFP-EKVPFRLTRMLTFAMEVSGVEGSFRITSENVMRVLRDNKESLMAILEAFAFDPLINW 2341
                      *****.*******************************************************99 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.7   5.3e-07   0.00079      13     157 ..     659     809 ..     651     811 .. 0.78
   2 !  194.3   1.3   8.2e-61   1.2e-57       1     161 []     815     974 ..     815     974 .. 0.98
   3 ?    0.8   0.4      0.27     4e+02     105     158 ..    1039    1091 ..    1004    1130 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 5.3e-07
     DUF3385  13 elLlnilkteqsqsirrevikllGilGALDPykhkqveer.....aedkkrreeaaretdlsllmvglspsneey...yptvvinaLlrilkdpslssh 103
                 +lL+++l+ ++  sir ev+k++G l  + P +   + ++      ++ k +++  +++++++l+++l +s++++   y   +++ Ll+  kd+s s+ 
  CCD22553.1 659 QLLFTLLN-DEMFSIRVEVLKIIGRLVSINPAFIIPFLRKtllelLTQLKYSVDLRKSEETATLLCTLISSSKDItkpYIEPILECLLTTAKDKS-STV 755
                 56677666.55889******************994444443333344546666666666666677777666665522266678999999999999.568 PP

     DUF3385 104 haavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLatLv 157
                  + ++++i       g +++ +Ld ++p ++ ++++++++  r+  l+ L++L+
  CCD22553.1 756 STIALKTIGELSVVGGEEMIAYLDTLMPIIIDTLQDQSKNFKRDAALKTLGQLT 809
                 8999999999999889999********************999********9996 PP

  == domain 2  score: 194.3 bits;  conditional E-value: 8.2e-61
     DUF3385   1 VvdPyleypqLLelLlnilkteqsqsirrevikllGilGALDPykhkqveeraedkkrreeaaretdlsllmvglspsneeyyptvvinaLlrilkdps 99 
                 V+dP+l+yp+LL++L++ilk+++sq++rre++kl+GilGALDPy++++ve ++++k +  +++++ d++llm+gls+s+eey  tvv+n+L++il+dps
  CCD22553.1 815 VIDPLLDYPELLSVLMGILKSDNSQTVRRETVKLIGILGALDPYRYREVEVTSTAKLTVDQNMPSIDMALLMQGLSTSSEEYLLTVVFNNLIKILNDPS 913
                 9*************************************************999999889999999********************************** PP

     DUF3385 100 lsshhaavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLatLvsivk 161
                 lssh++++++aim+if+tl+l+cv++L++++p++lsvi ++++ +l+ ++++qLa+Lvsivk
  CCD22553.1 914 LSSHYTSAIQAIMQIFETLRLNCVSYLRKVVPSFLSVIDNCPS-SLSTYYFKQLAVLVSIVK 974
                 *****************************************98.*****************7 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.27
     DUF3385  105 aavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLatLvs 158 
                  +av   im+ ++ ++ +   +   iip++l+  + +++ ++ e  +  L++L++
  CCD22553.1 1039 KAVTIQIMKSLTIINKNLEDYTYLIIPTVLKFAEFSTR-EVAEISITTLGKLIE 1091
                  44444455444444555555555566666666665555.666666666666654 PP

>> FRB_dom  FKBP12-rapamycin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.23   3.5e+02       9      29 ..    1377    1400 ..    1374    1410 .. 0.80
   2 !  132.5   2.8   3.9e-42   5.9e-39       1      98 [.    1927    2024 ..    1927    2025 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.23
     FRB_dom    9 whElwhegL...eeAsrlyfgekn 29  
                   hE+w+e L   eeA r+y ++++
  CCD22553.1 1377 LHETWYEKLerwEEALRAYDKRES 1400
                  69*******766788888877665 PP

  == domain 2  score: 132.5 bits;  conditional E-value: 3.9e-42
     FRB_dom    1 ELiRvAilwhElwhegLeeAsrlyfgeknveamlklleplhellekgpetlreasFaqafgreLkeaeewlkkykkteneedlnqawdiyyevfrri 97  
                  ELiRvA+lw+E+w+egLe+Asr +fge+nve+m+++l plh++l+ +pet++ea+F+++++r+L +a+ew ++yk+t++ ++lnqawdiyy+vfr+i
  CCD22553.1 1927 ELIRVAVLWQEQWYEGLEDASRYFFGEQNVEKMFATLTPLHKMLQGEPETAKEAAFKKMYERDLADAYEWAMNYKRTKEVNNLNQAWDIYYNVFRKI 2023
                  9***********************************************************************************************9 PP

     FRB_dom   98 k 98  
                  +
  CCD22553.1 2024 S 2024
                  7 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.1   7.1e-19   1.1e-15       2      32 .]    2415    2445 .]    2414    2445 .] 0.98

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 7.1e-19
        FATC    2 LsveqQVdrLIkeATdpeNLaqmyiGWcPww 32  
                  L+v  Q d+LIk+AT++eNL+q+yiGWcP+w
  CCD22553.1 2415 LDVATQLDKLIKQATSVENLCQHYIGWCPFW 2445
                  89***************************** PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.5   2.3e+03      13      29 ..     163     179 ..     162     180 .. 0.88
   2 ?    3.3   0.1     0.082   1.2e+02       1      29 [.     244     272 ..     244     274 .. 0.89
   3 ?   -2.3   0.0       5.5   8.2e+03       4      18 ..     624     638 ..     621     644 .. 0.80
   4 ?    3.3   0.0     0.081   1.2e+02       4      29 ..     660     685 ..     659     686 .. 0.92
   5 ?    5.1   0.0     0.022        34       1      28 [.     740     767 ..     740     769 .. 0.94
   6 !   14.3   0.0   2.4e-05     0.035       1      29 [.     781     810 ..     781     812 .. 0.90
   7 ?    2.8   0.0      0.12   1.8e+02       1      27 [.     825     852 ..     825     854 .. 0.88
   8 ?   -2.1   0.0       4.7     7e+03       3      15 ..     903     915 ..     901     931 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.5
                 SHHHHHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLgalae 29 
                 + eV + A ++Lg+la+
  CCD22553.1 163 DIEVMKVASNTLGELAS 179
                 678999*********97 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.082
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 +l+ ++++l+D+s  +R  Aa +L + ++
  CCD22553.1 244 ILDNIWHALRDKSLLIRTDAATTLQKCLQ 272
                 78999******************998776 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5.5
                 HHHHHHT-SSHHHHH CS
        HEAT   4 lllkllsDpspeVRe 18 
                 ll  +++Dp p +R 
  CCD22553.1 624 LLAVAITDPVPAIRL 638
                 5666789******97 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.081
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 ll +ll+D+  ++R  ++k +g+l++
  CCD22553.1 660 LLFTLLNDEMFSIRVEVLKIIGRLVS 685
                 6899********************97 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.022
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 +l +ll+  +D+s+ V   A+k++g+l+
  CCD22553.1 740 ILECLLTTAKDKSSTVSTIALKTIGELS 767
                 7999*********************995 PP

  == domain 6  score: 14.3 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHT-SSHH.HHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspe.VReaAakaLgalae 29 
                 l+P+++  l+D+s +  R+aA+k+Lg+l e
  CCD22553.1 781 LMPIIIDTLQDQSKNfKRDAALKTLGQLTE 810
                 8**********777747***********98 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.12
                 HHHHHHHHH.T-SSHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkll.sDpspeVReaAakaLgal 27 
                 ll +l+  l sD+s  VR+ ++k +g l
  CCD22553.1 825 LLSVLMGILkSDNSQTVRRETVKLIGIL 852
                 688999999999**********999965 PP

  == domain 8  score: -2.1 bits;  conditional E-value: 4.7
                 HHHHHHHT-SSHH CS
        HEAT   3 PlllkllsDpspe 15 
                 + l+k l+Dps +
  CCD22553.1 903 NNLIKILNDPSLS 915
                 6788889998865 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.2   1.8e+03      31      58 ..     243     270 ..     213     295 .. 0.76
   2 !    9.9   0.1   0.00063      0.94       2      69 ..     622     697 ..     621     704 .. 0.85
   3 !   14.6   0.0   2.2e-05     0.034       6      86 ..     746     848 ..     737     850 .. 0.71
   4 ?    5.6   0.0     0.014        21       3      81 ..    1026    1119 ..    1024    1126 .. 0.73
   5 ?   -1.9   0.0       3.1   4.6e+03      36      58 ..    1263    1285 ..    1224    1309 .. 0.40
   6 ?   -0.6   0.0       1.2   1.7e+03      33      84 ..    1851    1903 ..    1848    1916 .. 0.44

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.2
      HEAT_2  31 ealpaLvellededpavRraaaeaLgai 58 
                 ++l+ +  +l+d++  +R  aa++L ++
  CCD22553.1 243 SILDNIWHALRDKSLLIRTDAATTLQKC 270
                 6788899999************999875 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00063
      HEAT_2   2 daLlqalendpdpevrraairaLg.....rignpealpaLvellededpavRraaaeaLgaigd..pea.lpaLke 69 
                 ++Ll+++ +dp p++r + +  L      +++ pe  ++L+ ll+de   +R ++ + +g++ +  p++ +p+L++
  CCD22553.1 622 SKLLAVAITDPVPAIRLELLLHLNthydsQLAQPENAQLLFTLLNDEMFSIRVEVLKIIGRLVSinPAFiIPFLRK 697
                 67999999****************9999999999************************998854335542566666 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 2.2e-05
      HEAT_2   6 qalendpdpevrraairaLg.......rignp......ealpaLvellededpa.vRraaaeaLgai....g........dpealpaLkellddddddv 78 
                   + +d++  v   a++++g       +   +      +++p++++ l+d++ +  R aa ++Lg++    g         pe l++L  +l++d+++ 
  CCD22553.1 746 TTA-KDKSSTVSTIALKTIGelsvvggE---EmiayldTLMPIIIDTLQDQSKNfKRDAALKTLGQLtessGyvidplldYPELLSVLMGILKSDNSQT 840
                 444.677888888888888855443330...244444467**********998725667779***996555144444432599**************** PP

      HEAT_2  79 vReaAaea 86 
                 vR+++++ 
  CCD22553.1 841 VRRETVKL 848
                 ***98875 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.014
      HEAT_2    3 aLlqalendpdpe..vrraairaLg..rignpea....lpaLvellededpavRraaaeaLgai........gdpealpaLkellddddddvvRe 81  
                  ++l+al +dp+++  v +++ ++L   +++ +++    +p++++++e + ++v +  +++Lg++         + + +++L +lld+ d ++ R+
  CCD22553.1 1026 LFLEALNDDPSENkaVTIQIMKSLTiiNKNLEDYtyliIPTVLKFAEFSTREVAEISITTLGKLieninlnsMSTRIIQVLSRLLDTADIEL-RN 1119
                  68999976555544477788888887744444445577************************8865554433368899****9998776665.54 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 3.1
      HEAT_2   36 LvellededpavRraaaeaLgai 58  
                   vel +   ++  +  + aL+ +
  CCD22553.1 1263 WVELYSQYQENLIQSLCLALSSY 1285
                  33333333344444444444433 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 1.2
      HEAT_2   33 lpaLvellededpavRraaaeaLgaig..dpea.lpaLkellddddddvvReaAa 84  
                  lp L++ +  +++ v +     L+ +g  +p+a +  L+ + +++++   R++Aa
  CCD22553.1 1851 LPQLISRIHQPNEVVSMSLLSLLSNLGkaHPQAlVYPLTVAIKSESV--SRQKAA 1903
                  44444444445555544444444444422233212333333332222..223333 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.8   7.1e+03      26      42 ..      59      75 ..      55      79 .. 0.86
   2 ?   -2.6   0.0       5.8   8.7e+03       3      37 ..     672     706 ..     671     711 .. 0.77
   3 !    7.6   0.0    0.0038       5.7      23      55 .]     734     766 ..     727     766 .. 0.92
   4 ?    6.1   0.0     0.011        16       7      55 .]     759     808 ..     757     808 .. 0.95
   5 ?    5.6   0.0     0.016        23       6      53 ..     800     850 ..     796     852 .. 0.70
   6 ?   -2.0   0.0       3.8   5.6e+03      24      42 ..    1018    1036 ..    1013    1037 .. 0.86
   7 ?   -1.8   0.0       3.3     5e+03      28      55 .]    1062    1089 ..    1056    1089 .. 0.88
   8 ?   -2.0   0.0       3.8   5.7e+03      15      53 ..    1091    1126 ..    1078    1128 .. 0.62
   9 ?   -2.5   0.2       5.6   8.3e+03      47      55 .]    1450    1458 ..    1448    1462 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.8
     HEAT_EZ 26 vpeilpaLlalLnddsd 42
                 ++i+++Ll  L+++++
  CCD22553.1 59 ESRIIDQLLEKLKSPKP 75
                679*********99887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.8
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalL 37 
                 +R  ++  +Grl + +p  + p++ + l +Ll  L
  CCD22553.1 672 IRVEVLKIIGRLVSINPAFIIPFLRKTLLELLTQL 706
                 57788888999888999888888888888887666 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0038
     HEAT_EZ  23 qplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +p+++ il +Ll + +d+s++V + A+ ++g l
  CCD22553.1 734 KPYIEPILECLLTTAKDKSSTVSTIALKTIGEL 766
                 7999**************************986 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.011
     HEAT_EZ   7 AawaLGrlaggepellqplvpeilpaLlalLnddsdeV.RaaAagaLgnl 55 
                 A+ ++G+l ++++e +  +++ ++p  + +L+d s++  R aA+ +Lg+l
  CCD22553.1 759 ALKTIGELSVVGGEEMIAYLDTLMPIIIDTLQDQSKNFkRDAALKTLGQL 808
                 7889999**************************999999*********97 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.016
     HEAT_EZ   6 aAawaLGrlaggepellqp..lvpeilpaLlalLnddsd.eVRaaAagaLg 53 
                 aA+ +LG l +  +  + p    pe+l  L+  L++d++ +VR  ++  +g
  CCD22553.1 800 AALKTLGQLTESSGYVIDPllDYPELLSVLMGILKSDNSqTVRRETVKLIG 850
                 555566654444444444444579**********99999899988887777 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 3.8
     HEAT_EZ   24 plvpeilpaLlalLnddsd 42  
                  ++vp  l ++l +Lndd++
  CCD22553.1 1018 KQVPLTLTLFLEALNDDPS 1036
                  678888999********97 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 3.3
     HEAT_EZ   28 eilpaLlalLnddsdeVRaaAagaLgnl 55  
                   i+p  l++ + +  eV + ++ +Lg+l
  CCD22553.1 1062 LIIPTVLKFAEFSTREVAEISITTLGKL 1089
                  699999********************97 PP

  == domain 8  score: -2.0 bits;  conditional E-value: 3.8
     HEAT_EZ   15 aggepellqplvpeilpaLlalLnddsd..eVRaaAagaLg 53  
                  ++ + + +++ + ++l  Ll     d +  e R +   +L+
  CCD22553.1 1091 ENINLNSMSTRIIQVLSRLL-----DTAdiELRNTIMNTLS 1126
                  55555555555555666666.....6663366998888887 PP

  == domain 9  score: -2.5 bits;  conditional E-value: 5.6
     HEAT_EZ   47 aAagaLgnl 55  
                   Aa+ Lg++
  CCD22553.1 1450 GAAWSLGRW 1458
                  567777765 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.15   2.3e+02      58     158 ..     207     271 ..     148     296 .. 0.63
   2 ?   -3.0   0.1       2.8   4.2e+03      77     118 ..     400     444 ..     396     459 .. 0.66
   3 !   12.3   0.1     6e-05      0.09      47     125 ..     736     812 ..     709     820 .. 0.82
   4 ?   -0.4   0.0      0.46   6.9e+02      47      98 ..     936     987 ..     924     993 .. 0.89
   5 !    8.7   1.5   0.00079       1.2      76     164 ..    1045    1144 ..    1036    1166 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.15
     CLASP_N  58 ilkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwLki 156
                 i+   +s  t    t++h++  la      l  +v+++                                    l  ++ al dK+  +R+ +a+ L+ 
  CCD22553.1 207 IIVGSASKTTNKKHTALHIIISLADYVPYLLFRYVNSI------------------------------------LDNIWHALRDKSLLIRTDAATTLQK 269
                 44444444444444444444444444444444445555....................................5555555555555555555544444 PP

     CLASP_N 157 ll 158
                  l
  CCD22553.1 270 CL 271
                 33 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.8
     CLASP_N  77 lkelaiqlkeqldpmveillptLlkllg...dtKkiisqnanqal 118
                 + +la + + q+ p+++ +++++++      ++ ki+ ++ + ++
  CCD22553.1 400 IADLAVEINAQISPYLNTIFEIIINTFKlkyKNTKITESALFYCI 444
                 678999999999999999999988654311155555555555555 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 6e-05
     CLASP_N  47 lleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdt.Kkiisqnanqalaallsna 125
                 ++e +   le++l+++++ ++t+s+ +++++ el+ + +e++ ++++ l+p++++ l+d+ K+  + +a  +l +l ++ 
  CCD22553.1 736 YIEPI---LECLLTTAKDKSSTVSTIALKTIGELSVVGGEEMIAYLDTLMPIIIDTLQDQsKNFKRDAALKTLGQLTESS 812
                 44444...5999*********************************************98725555666666776666655 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.46
     CLASP_N  47 lleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillpt 98 
                  +++l++++  +l+ +    ++ls+   + l  l+ + k+++ p+ve ++  
  CCD22553.1 936 CVSYLRKVVPSFLSVIDNCPSSLSTYYFKQLAVLVSIVKDHIRPYVEDIYRA 987
                 5788999999999999999****************************99875 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.00079
     CLASP_N   76 llkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnas...fsprilqvlsvalqdKnvqpReysaiwLkilltrfe....... 162 
                  ++k l+i+ +++l+ +   ++pt lk        +++ + ++l  l++n++   +s+ri+qvls +l     ++R + ++ L++ll r e       
  CCD22553.1 1045 IMKSLTII-NKNLEDYTYLIIPTVLKFAEFSTREVAEISITTLGKLIENINlnsMSTRIIQVLSRLLDTADIELRNTIMNTLSLLLLRLEtdftiyv 1140
                  55666655.5689************************************985556799****************************99994444444 PP

     CLASP_N  163 ..sh 164 
                    ++
  CCD22553.1 1141 plIN 1144
                  4433 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.59   8.9e+02      49      95 ..     224     271 ..     180     273 .. 0.70
   2 ?    7.8   0.2    0.0034       5.1       7      58 ..     397     448 ..     394     479 .. 0.82
   3 ?    0.0   0.1      0.88   1.3e+03      36      76 ..     581     627 ..     558     638 .. 0.62
   4 ?    9.9   0.0   0.00073       1.1      10      89 ..     721     801 ..     714     807 .. 0.90
   5 ?    1.4   0.2      0.33   4.9e+02      30      74 ..     903     948 ..     879     994 .. 0.55
   6 ?   -1.7   0.2         3   4.5e+03      17      86 ..    1052    1119 ..    1039    1126 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.59
  Vac14_Fab1_bd  49 EslyniakvakgevlkllneifdalvklvaDsdesvks.gaelldrll 95 
                      +  +a  +   +++++n+i+d +++ + D+   +++ +a +l+++l
     CCD22553.1 224 HIIISLADYVPYLLFRYVNSILDNIWHALRDKSLLIRTdAATTLQKCL 271
                    455555555666677778888888888888887777752556666665 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0034
  Vac14_Fab1_bd   7 ligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakva 58 
                    li +a +a+ ++++i++yl++i ++++++f+ k + ++ + +  +y i k +
     CCD22553.1 397 LICIADLAVEINAQISPYLNTIFEIIINTFKLKYKNTKITESALFYCIGKLS 448
                    7999**************************9999999988888888888865 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.88
  Vac14_Fab1_bd  36 fsDkdsrvRyy.acEs..ly...niakvakgevlkllneifdalvkl 76 
                    ++ +d ++R y a+ s  ++   ni+k++   +l ++ne+++ l  +
     CCD22553.1 581 IEHDDPEIRKYsAITScdIFgkdNICKQTSIYALDCVNEVLSKLLAV 627
                    45555566644133332233344899999999999999998877655 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00073
  Vac14_Fab1_bd  10 Laavaialekk.ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksgae 89 
                    L ++ i+ +k+ +k+y+e i++ +l++ +Dk+s v   a  ++  ++ v  +e++ +l ++  +++  + D+ ++ k+ a+
     CCD22553.1 721 LLCTLISSSKDiTKPYIEPILECLLTTAKDKSSTVSTIALKTIGELSVVGGEEMIAYLDTLMPIIIDTLQDQSKNFKRDAA 801
                    555666667776899***********************************************************9998765 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.33
  Vac14_Fab1_bd  30 kpvlkcfsDkdsrvRyy.acEslyniakvakgevlkllneifdalv 74 
                    + ++k+++D +    y+ a+ ++  i  +++ +++++l ++   + 
     CCD22553.1 903 NNLIKILNDPSLSSHYTsAIQAIMQIFETLRLNCVSYLRKVVPSFL 948
                    4555555666555555434555555555555555555555543333 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 3
  Vac14_Fab1_bd   17 lekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlklln.eifdalvklvaDsdesvks 86  
                     ++k++++y+  i+++vlk  + + ++    a  s+  + k +++  l+ ++ +i ++l++l+  +d ++++
     CCD22553.1 1052 INKNLEDYTYLIIPTVLKFAEFSTRE---VAEISITTLGKLIENINLNSMStRIIQVLSRLLDTADIELRN 1119
                     55668888888999888876555444...455566666677777777665426888888887777777666 PP

>> DUF3437  Domain of unknown function (DUF3437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.072   1.1e+02       3      53 ..     218     269 ..     216     273 .. 0.93
   2 ?    5.3   0.0     0.012        18       8      53 ..     719     765 ..     712     816 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.072
     DUF3437   3 erhaavlglsAlvlafpydvPkwlpevleeLaraardpa.pirktvkktlse 53 
                 ++h a+  + +l   +py + +++ ++l ++ +a rd++  ir+ + +tl++
  CCD22553.1 218 KKHTALHIIISLADYVPYLLFRYVNSILDNIWHALRDKSlLIRTDAATTLQK 269
                 6899999999999**************************88******99986 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.012
     DUF3437   8 vlglsAlvlafpydvPkwlpevleeLaraardpa.pirktvkktlse 53 
                    l+ l+++    + +++ ++le L + a+d++  +++ + kt++e
  CCD22553.1 719 ATLLCTLISSSKDITKPYIEPILECLLTTAKDKSsTVSTIALKTIGE 765
                 5569999999999999************9999997899999999887 PP

>> DUF3453  Domain of unknown function (DUF3453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.5   5.3e+03     134     162 ..     360     388 ..     359     395 .. 0.83
   2 ?    2.4   0.0     0.071   1.1e+02     109     150 ..     717     758 ..     708     768 .. 0.84
   3 ?    8.7   0.3   0.00085       1.3     111     159 ..    1024    1072 ..    1017    1121 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.5
     DUF3453 134 nslasiakqRpqfankilqallsfnplkk 162
                 n+ a+i+k+ ++++   l++l+++n++ k
  CCD22553.1 360 NHEAFITKHLSETMVFLLTSLKNLNVNIK 388
                 56789999999**************9776 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.071
     DUF3453 109 rlLdrlLkvlqeasiltsslviatlnslasiakqRpqfanki 150
                 ++  +l +++ +++ +t++ ++ +l++l + ak +++++++i
  CCD22553.1 717 ETATLLCTLISSSKDITKPYIEPILECLLTTAKDKSSTVSTI 758
                 455566677778899***********************9988 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00085
     DUF3453  111 LdrlLkvlqeasiltsslviatlnslasiakqRpqfankilqallsfnp 159 
                  L + L+ l ++++ +++++i +++sl++i k+   ++ +i++++l+f  
  CCD22553.1 1024 LTLFLEALNDDPSENKAVTIQIMKSLTIINKNLEDYTYLIIPTVLKFAE 1072
                  7889999****************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.21u 0.28s 00:00:01.49 Elapsed: 00:00:00.51
# Mc/sec: 14298.84
//
Query:       CCD22554.1  [L=462]
Description: hypothetical protein NDAI_0A03970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-90  303.7   0.0    3.8e-88  295.8   0.0    2.1  1  Actin     Actin
      2e-05   23.6   0.0     0.0074   15.1   0.0    2.1  2  MreB_Mbl  MreB/Mbl protein
    0.00027   21.3   0.1      0.003   18.0   0.0    2.5  2  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.8   0.0   6.3e-92   3.8e-88       4     403 ..       6     454 ..       3     456 .. 0.92

  Alignments for each domain:
  == domain 1  score: 295.8 bits;  conditional E-value: 6.3e-92
       Actin   4 vsavVlDnGssttraGyagedaPkavipslvgkprgrkvea.......................................................... 44 
                 ++avV+DnG+++t++G+ag+d+P  ++p++++ ++ +++++                                                          
  CCD22554.1   6 NPAVVMDNGTGLTKLGFAGNDSPSWIFPTAIATSQSSNTKKasssssssaaalgpsntgtsanssatpyfgnstsatsfnnlnknmllsnnlagkrgte 104
                 789*****************************888877766789******************************************************* PP

       Actin  45 ..klyvgdealt..krpelevrspvedGvvedwdaveelwehvlkeelkvdpeehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafas 139
                   ++y+g+eal   + p +++++p+++G ve+wd++e+ we+++++ l+++pe+h +lltepplnpp++re+++Ei+fE+f++++ly+a +avl++ as
  CCD22554.1 105 dlDFYIGNEALVasQGPSYSLSYPIRHGQVENWDHMERFWENSIFKYLRTEPEDHFFLLTEPPLNPPENREQIAEIFFESFNCAGLYIAVQAVLALAAS 203
                 *********8776569******************************************************************************99888 PP

       Actin 140 gks........tglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssknvevtprylikkkkvveaessaekeelekltesyktleee 230
                   s        tg v+DsG++vt+v+pV +Gyv+  ai++ +++G+++t  +++ll+++                            ++++s+k     
  CCD22554.1 204 WTSskvtdrslTGTVIDSGDGVTHVIPVAEGYVIGSAIKNIPIAGRDITLFIQSLLRER---------------------------GEVDTSLK----- 270
                 777888****************************************************7...........................23455555..... PP

       Actin 231 evleeiKesvcevsedpegdeekss..sspeksYeLPDg.....seiklgeeRfkvpEiLFdpsligsesaleeekskllgiselivaainacdvdlrp 322
                  + e iK++ c+v  d+ ++ +k +   s   +++  ++     +++++g eRf +pEi F+p+++ s+         l+ ++ ++ ++i+ac++d+r+
  CCD22554.1 271 -TAERIKQEYCYVCPDIVKEFNKFDrdGSKFAQFIVENQeqtrkKVVDVGYERFLAPEIFFNPEIASSDF--------LTPLPTVVDHTIQACPIDVRK 360
                 .56789**********9974333333333344566666644444699****************9987764........578****************** PP

       Actin 323 eLlanivvtGGnsllpglteRlekelaql..............askgvkvkiiapeeerkysaWiGGSiLAslgtfqqlwvskqEYeEqGssvve 403
                  L++niv++GG+++++ +  Rl+++l+ +               s+gv v++i+   ++++++W+GGS+LA++ +f++ + +k++YeE+G+++v+
  CCD22554.1 361 GLYNNIVLSGGSTMFKDFGRRLQRDLKSIvsnriaqserlsgtKSTGVDVQVISHR-KQRNAVWFGGSLLAQTAEFKSYCHTKKDYEEYGPEIVR 454
                 *****************************9999999999999888889*******9.9**********************************997 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-06    0.0074     147     230 ..     216     303 ..     126     325 .. 0.84
   2 !    6.6   0.0   0.00051         3     254     301 ..     344     390 ..     332     416 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.2e-06
                 EEEEEE-SS-EEEEEEETTEEEEE..EEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHH..EEEEEEEETTTT CS
    MreB_Mbl 147 nmvvdiGggttevavislggivts..ksvrvaGdeldeaiikyirkkynlliGertaekikieigsavkeeeee..kmeikGrdlvtg 230
                   v+d G g t v  ++ g ++ s  k + +aG ++   i +++r++ ++    +tae+ik+e  +++++  +e  k++  G + ++ 
  CCD22554.1 216 GTVIDSGDGVTHVIPVAEGYVIGSaiKNIPIAGRDITLFIQSLLRERGEVDTSLKTAERIKQEYCYVCPDIVKEfnKFDRDGSKFAQF 303
                 5699*********9999999985433899***********************************999998776655666666666555 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00051
                 HHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-E CS
    MreB_Mbl 254 veavkevLektppeLaadivdrgivltGGgallkgldkllseetglpv 301
                  + v ++++++p +  + ++++ ivl+GG++++k++ + l++ ++  v
  CCD22554.1 344 PTVVDHTIQACPIDVRKGLYNN-IVLSGGSTMFKDFGRRLQRDLKSIV 390
                 5678899999*****9999875.99***************99877444 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.65   3.9e+03       1      33 [.       9      44 ..       9      59 .. 0.65
   2 !   18.0   0.0     5e-07     0.003       2      71 ..     218     371 ..     217     453 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.65
                EEEEE-SSSEEEEEEETTEEEE...EEEES--HHHH CS
                xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvh...lrvigvggngi 33
                ++ D G+g t++  a ++++ +   +++   ++++ 
  CCD22554.1  9 VVMDNGTGLTKLGFAGNDSPSWifpTAIATSQSSNT 44
                578999999999999888877755333333344444 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 5e-07
                 EEEE-SSSEEEEEEETTEEEE..EEEES--HHHHHHHHHHHH......T--HHHHHHHHHHH--S--.......................EEEEEHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxx.......................xxxxxxxxx RF
        FtsA   2 lvDiGagktdvavaedgalvh..lrvigvggngitkdiakal......rtaveeAerikikyGsala.......................ekeigrkel 69 
                 ++D G g t v+ + +g ++   ++ i+++g+ it  i+  l       t++++Aerik +y ++++                       + e +rk++
  CCD22554.1 218 VIDSGDGVTHVIPVAEGYVIGsaIKNIPIAGRDITLFIQSLLrergevDTSLKTAERIKQEYCYVCPdivkefnkfdrdgskfaqfivenQ-EQTRKKV 315
                 89***************999999999***********9999988888899**********9999999887777777666666666666542.2222222 PP

                 H......................................................G CS
                 x......................................................x RF
        FtsA  70 s......................................................g 71 
                                                                        g
  CCD22554.1 316 VdvgyerflapeiffnpeiassdfltplptvvdhtiqacpidvrkglynnivlsgG 371
                 24555555555555555555555555555555555555555566666666666651 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3239.68
//
Query:       CCD22555.1  [L=561]
Description: hypothetical protein NDAI_0A03980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.7e-151  503.8   3.9   5.3e-151  503.6   3.9    1.0  1  Cpn60_TCP1     TCP-1/cpn60 chaperonin family
     0.0089   15.9   1.3        2.7    7.8   0.1    2.9  2  CPT            Chloramphenicol phosphotransferase-like protei
  ------ inclusion threshold ------
      0.048   13.7   0.0        0.1   12.7   0.0    1.7  1  Cation_ATPase  Cation transport ATPase (P-type)


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.6   3.9  8.9e-155  5.3e-151       1     489 [.      54     556 ..      54     558 .. 0.95

  Alignments for each domain:
  == domain 1  score: 503.6 bits;  conditional E-value: 8.9e-155
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 +a+i+kt+lGP+G+dK+l+++ g++++TnDGatil+++e+++ +akllv++++sqdee+GDGTt vv+La++Ll++a +li++g+hp++i +g+++a++
  CCD22555.1  54 VASIIKTSLGPRGLDKILISPDGDITITNDGATILSQMELDNEIAKLLVQLSKSQDEEIGDGTTGVVVLASALLDQALELIEKGIHPIKIANGFDEAAK 152
                 689************************************************************************************************ PP

                 HHHHHH.....HHHXEEBXSC.STT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHH.HCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--S CS
  Cpn60_TCP1 100 kaleaL.....keiaveisse.ekdreeLlkvartslsskltskeaeelsklvvdAv.klieenekeldlgrikvvkieggsledselveGlvldkgvl 191
                  a++ L     + i   ++ + +  ++ L k+a+tsl+sk++sk+ + +++++vdAv +++++++k++d++ i++    ggsl+ds+l++G++ldk+++
  CCD22555.1 153 LAIQTLeekgtDDI--MLNENdQLFNDYLFKAAKTSLGSKIVSKNHDMFAQMAVDAVtSVMNKERKDVDFDLIRLQGRVGGSLKDSKLINGVILDKDFS 249
                 ******65544333..222222557899*****************************99999888********************************** PP

                 STTSSCEE......ECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HH CS
  Cpn60_TCP1 192 spdmpkkl......enakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkk 284
                 +p+mp+ +      + +k+++l++++e++k++tk+++++s++ee++kl+  e+++++e++  ++++g++vv+cq+g+dd+a+h+l +n++ a+r+v  +
  CCD22555.1 250 HPQMPTVVlpkegeDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMINFVKEAGADVVICQWGFDDEANHLLLQNELPAVRWVGGQ 348
                 ***97776777776777********************************************************************************** PP

                 HHHHHHHHHT--EBSCGGGGGCGC-EEEEEEEECCETT..CCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHH CS
  Cpn60_TCP1 285 dlerlakatGatavssledltpeelGtakkveeekigs..ekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatel 381
                 +le++a+ t++++v +++dlt+e+lGt+ kv+e ++g+  +++++ie+ k++k++t  lrg++++++de++ra++d+l+vv+n+++d++vv+GGGa+e+
  CCD22555.1 349 ELEQIAISTNGRIVPRFQDLTKEKLGTCAKVYELEFGTtkDRMLVIEQLKDSKTVTCFLRGSNKMIVDEAQRALHDSLCVVRNLVKDSRVVYGGGAAEV 447
                 ***********************************9975589********************************************************* PP

                 HHHHHHHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTX.TTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHH CS
  Cpn60_TCP1 382 elakklkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkge.kelgidvesgeiidlveagvvDplkvkrqalksAteaast 479
                  ++ +++e+a+++ g +q+a++afa+AL +ip+tLaeN+Gldpie+l++l+++h k++  ++g+d+  + + d++e  +vDp+  k+q + +At++ ++
  CCD22555.1 448 TMSLAVSEEADRQRGIDQYAFRAFAEALDTIPMTLAENSGLDPIETLSNLKSKHVKENiSCVGVDCLGKGTNDMKELFIVDPFIGKKQQVLLATQLCRM 546
                 ******************************************************6666479************************************** PP

                 HHCEEEEEXX CS
  Cpn60_TCP1 480 iLrideiika 489
                 iL+id++i  
  CCD22555.1 547 ILKIDNVIIS 556
                 *******975 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.2    0.0019        12      12      52 ..     182     222 ..     180     348 .. 0.79
   2 !    7.8   0.1   0.00046       2.7      74     141 ..     401     467 ..     368     477 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0019
                 SSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSE CS
         CPT  12 sGKsslaralqevldepwlhlgvDafvealppkrqdeadgl 52 
                 + K+sl   + +  ++ + +++vDa +  + ++r+d + +l
  CCD22555.1 182 AAKTSLGSKIVSKNHDMFAQMAVDAVTSVMNKERKDVDFDL 222
                 789***************************99999965554 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00046
                 HHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTTHHHHH CS
         CPT  74 eavaamaraGnnvivDdvilekewlvdllrrllsgldvllVGvrcplevlerRelergdRepGlaalq 141
                 ++v  ++r  n++ivD++    +++  ++r+l+++ +v++ G  +++ +     +e +dR+ G+ ++ 
  CCD22555.1 401 KTVTCFLRGSNKMIVDEAQRALHDSLCVVRNLVKDSRVVYGGGAAEVTM-SLAVSEEADRQRGIDQYA 467
                 679999999********99999999999************997776653.333456678888776665 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.8e-05       0.1      44      88 ..     374     418 ..     292     421 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.8e-05
  Cation_ATPase  44 eetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrC 88 
                        kv e++F  ++ rm+v+ +l+++k+v+++ +G+  +i+++ 
     CCD22555.1 374 GTCAKVYELEFGTTKDRMLVIEQLKDSKTVTCFLRGSNKMIVDEA 418
                    45789************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4099.96
//
Query:       CCD22556.1  [L=126]
Description: hypothetical protein NDAI_0A03990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-19   67.0   1.1    9.2e-19   67.0   1.1    2.9  3  TFIIS_C          Transcription factor S-II (TFIIS)
      4e-13   49.0  10.2    1.1e-09   38.0   1.2    3.0  2  RNA_POL_M_15KD   RNA polymerases M/15 Kd subunit
    8.4e-06   25.7   6.5     0.0057   16.7   0.3    2.7  2  DZR              Double zinc ribbon
    0.00092   19.1   8.7       0.43   10.6   0.2    3.7  3  zinc_ribbon_4    zinc-ribbon domain
    0.00097   19.1   2.3      0.007   16.3   0.2    2.4  2  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
     0.0017   18.4  10.5       0.42   10.8   0.5    3.3  3  Zn-ribbon_8      Zinc ribbon domain
     0.0019   17.5   2.5      0.015   14.6   0.7    2.4  2  zf-TFIIB         Transcription factor zinc-finger
     0.0071   16.0  15.0       0.35   10.7   0.6    4.4  4  zinc_ribbon_2    zinc-ribbon domain
     0.0083   16.3   6.8        1.1    9.5   1.8    2.5  2  IBR              IBR domain, a half RING-finger domain
  ------ inclusion threshold ------
      0.013   15.1   4.7       0.31   10.6   0.5    2.1  2  DpnI             Dam-replacing family
      0.013   15.9   5.1       0.39   11.2   0.1    3.3  3  zf-H2C2_2        Zinc-finger double domain
      0.017   14.7   2.5      0.017   14.7   2.5    2.9  2  TF_Zn_Ribbon     TFIIB zinc-binding
       0.02   14.9   0.1      0.022   14.8   0.1    1.1  1  DUF523           Protein of unknown function (DUF523)
      0.025   14.6   2.0      0.025   14.6   2.0    2.4  2  Ogr_Delta        Ogr/Delta-like zinc finger
       0.03   13.3   0.0      0.035   13.0   0.0    1.1  1  Baculo_p48       Baculovirus P48 protein
      0.038   13.8   2.1      0.038   13.8   2.1    3.2  2  zf-C4_Topoisom   Topoisomerase DNA binding C4 zinc finger
      0.042   14.2   7.3       0.37   11.2   0.9    3.0  2  Lar_restr_allev  Restriction alleviation protein Lar
      0.044   13.2   0.4        3.7    7.1   0.0    2.4  2  Mu-like_Com      Mu-like prophage protein Com
       0.05   13.0  14.2        1.6    8.3   0.5    4.3  4  zf-ribbon_3      zinc-ribbon domain
      0.078   12.7   3.4       0.15   11.8   0.0    2.7  3  Baculo_LEF5_C    Baculoviridae late expression factor 5 C-ter
      0.082   12.9   7.4        9.1    6.3   7.7    2.9  1  HypA             Hydrogenase/urease nickel incorporation, met
      0.095   11.6   0.4       0.12   11.3   0.4    1.2  1  tRNA-synt_1f     tRNA synthetases class I (K)
       0.11   12.4   4.3        1.4    8.9   0.2    2.5  2  C1_1             Phorbol esters/diacylglycerol binding domain
       0.16   11.6   0.3       0.16   11.6   0.3    2.9  3  GATA             GATA zinc finger
       0.26   11.6   0.3       0.26   11.6   0.3    2.7  3  DUF2072          Zn-ribbon containing protein
       0.31   10.9   4.4       0.52   10.2   0.4    2.3  2  eIF-5_eIF-2B     Domain found in IF2B/IF5
       0.33   11.0   0.1       0.33   11.0   0.1    3.2  3  CpXC             CpXC protein
        1.2    9.1   7.4         14    5.7   0.2    2.7  2  OrfB_Zn_ribbon   Putative transposase DNA-binding domain
        2.3    8.2  10.0        4.5    7.3   1.4    3.7  3  Nudix_N_2        Nudix N-terminal
        2.3    8.0   9.8         12    5.7   0.2    3.8  4  DNA_RNApol_7kD   DNA directed RNA polymerase, 7 kDa subunit
        2.4    8.8   9.2       0.65   10.6   1.4    2.4  2  Stc1             Stc1 domain
        2.8    8.2   9.7         17    5.7   0.2    3.6  3  zf-AN1           AN1-like Zinc finger
        3.1    8.3   5.8         74    3.8   3.7    3.1  3  DUF983           Protein of unknown function (DUF983)
        5.2    6.8  10.4         25    4.7   0.0    3.8  3  Ribosomal_S27e   Ribosomal protein S27
        8.3    6.2  12.2         11    5.8   0.0    3.7  4  zf-RRN7          Zinc-finger of RNA-polymerase I-specific TFI
          9    6.3  14.3        5.2    7.1   1.4    3.9  4  Zn_ribbon_SprT   SprT-like zinc ribbon domain
        9.3    7.1  12.0         72    4.2   1.7    3.2  2  zinc_ribbon_15   zinc-ribbon family


Domain annotation for each model (and alignments):
>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1       1.1   5.5e+02      31      36 ..      10      15 ..       7      16 .. 0.78
   2 ?    1.8   0.2      0.47   2.3e+02      30      37 ..      30      37 ..      28      39 .. 0.62
   3 !   67.0   1.1   1.9e-21   9.2e-19       2      39 .]      86     123 ..      85     123 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.1
     TFIIS_C 31 CtkCgh 36
                C++Cg+
  CCD22556.1 10 CLDCGN 15
                888886 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.47
     TFIIS_C 30 kCtkCghr 37
                +C +C+ +
  CCD22556.1 30 ECSQCQAK 37
                56666655 PP

  == domain 3  score: 67.0 bits;  conditional E-value: 1.9e-21
     TFIIS_C   2 kCpkCgsreayffqlQtRsaDEpmtvfykCtkCghrWr 39 
                 kCpkCg++e+++ +lQ+RsaDE++tvfy+Ct+Cg+++r
  CCD22556.1  86 KCPKCGNDEMHYHTLQLRSADEGATVFYTCTSCGYKFR 123
                 8***********************************98 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   1.2   2.2e-12   1.1e-09       1      36 []       7      43 ..       7      43 .. 0.92
   2 !   13.4   2.2   0.00011     0.052       4      31 ..      87     122 ..      87     125 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 2.2e-12
                    EEBESTTTSBEEEEECSCCCE.EEESSSS-EEESSCS CS
  RNA_POL_M_15KD  1 lkFCpkCgNlLlpkedkegkn.feCrqCgYeepadqf 36
                    l+FC +CgNlL +++    +   eC+qC++++p+++f
      CCD22556.1  7 LIFCLDCGNLLDNPSSAVDSSeIECSQCQAKYPKSKF 43
                    79*********99998888888************986 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00011
                     ESTTTS......BEEEEECSCCCE..EEESSSS-EE CS
  RNA_POL_M_15KD   4 CpkCgN......lLlpkedkegkn..feCrqCgYee 31 
                     CpkCgN       L  ++++eg    + C +CgY++
      CCD22556.1  87 CPKCGNdemhyhTLQLRSADEGATvfYTCTSCGYKF 122
                     9****98866655888999999888*********97 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.3   1.2e-05    0.0057      13      40 ..       8      40 ..       4      45 .. 0.88
   2 !   10.8   1.4   0.00078      0.38      14      39 ..      86     123 ..      74     126 .] 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.2e-05
         DZR 13 rfCseCgtklkavaa.....edrCpsCgekvdp 40
                +fC +Cg+ l+++++     e+ C++C++k ++
  CCD22556.1  8 IFCLDCGNLLDNPSSavdssEIECSQCQAKYPK 40
                6*********988889************99765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00078
         DZR  14 fCseCgtklkavaa............edrCpsCgekvd 39 
                  C++Cg++   + +             ++C sCg+k  
  CCD22556.1  86 KCPKCGNDEMHYHTlqlrsadegatvFYTCTSCGYKFR 123
                 69****995555556777778899999*******9865 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.2   0.00088      0.43       3      12 ..      29      38 ..      28      48 .. 0.91
   2 ?    6.8   0.1     0.013       6.5      23      33 ..      81      92 ..      71      93 .. 0.69
   3 ?    5.7   0.2     0.029        14      27      36 .]     114     123 ..     107     123 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00088
  zinc_ribbon_4  3 itCpsCkaky 12
                   i+C +C+aky
     CCD22556.1 29 IECSQCQAKY 38
                   9********9 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.013
  zinc_ribbon_4 23 gv.kvrCskCgh 33
                   +v k +C+kCg+
     CCD22556.1 81 AViKEKCPKCGN 92
                   444779****97 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.029
  zinc_ribbon_4  27 rCskCghvFr 36 
                    +C+ Cg +Fr
     CCD22556.1 114 TCTSCGYKFR 123
                    6888888875 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.36   1.7e+02      21      45 ..      10      36 ..       6      37 .. 0.66
   2 !   16.3   0.2   1.4e-05     0.007      20      45 ..      86     120 ..      71     121 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.36
  Zn_Tnp_IS1595 21 CPhCgsr..kayriktrglfqCkeCrk 45
                   C  Cg+    + +  +    +C+ C++
     CCD22556.1 10 CLDCGNLldNPSSAVDSSEIECSQCQA 36
                   666777666555555556778999975 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.4e-05
  Zn_Tnp_IS1595  20 vCPhCgsr..kayrikt.......rglfqCkeCrk 45 
                     CP+Cg++  ++++++           + C +C++
     CCD22556.1  86 KCPKCGNDemHYHTLQLrsadegaTVFYTCTSCGY 120
                    6*******96444444488**999999******98 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.5   0.00087      0.42       8      36 ..      10      38 ..       8      41 .. 0.86
   2 ?    7.2   0.1     0.012       5.6      27      34 ..      85      92 ..      72      96 .. 0.76
   3 ?    5.7   1.1     0.034        17       6      15 ..     113     122 ..     112     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00087
  Zn-ribbon_8  8 CeeCghefevlqsisdapltaCPeCgsev 36
                 C +Cg+  +   s+ d+++++C +C+++ 
   CCD22556.1 10 CLDCGNLLDNPSSAVDSSEIECSQCQAKY 38
                 9********888777999*******9865 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.012
  Zn-ribbon_8 27 taCPeCgs 34
                 ++CP+Cg 
   CCD22556.1 85 EKCPKCGN 92
                 45****97 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.034
  Zn-ribbon_8   6 YrCeeCghef 15 
                  Y C++Cg +f
   CCD22556.1 113 YTCTSCGYKF 122
                  99*****999 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.24   1.2e+02       2       7 ..      31      36 ..      18      50 .. 0.64
   2 !   14.6   0.7     3e-05     0.015       1      26 [.      86     119 ..      86     119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.24
    zf-TFIIB  2 CPkCqd 7 
                C  Cq+
  CCD22556.1 31 CSQCQA 36
                555555 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3e-05
    zf-TFIIB   1 kCPkCqd.ele..eser.....ggveidyCpqCr 26 
                 kCPkC++ e++  ++++     g   +++C++C+
  CCD22556.1  86 KCPKCGNdEMHyhTLQLrsadeGATVFYTCTSCG 119
                 8****8659**774444668867799999****7 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.039        19       1      11 [.       9      19 ..       9      22 .. 0.83
   2 ?    2.4   0.4      0.29   1.4e+02       2      11 ..      31      40 ..      30      42 .. 0.84
   3 !   10.7   0.6   0.00072      0.35       8      21 ..      76      92 ..      75      93 .. 0.65
   4 ?    5.8   0.3     0.024        11       2      22 ..     115     121 ..     107     122 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.039
  zinc_ribbon_2  1 fCpnCGaelqd 11
                   fC  CG+ l++
     CCD22556.1  9 FCLDCGNLLDN 19
                   89999998875 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.29
  zinc_ribbon_2  2 CpnCGaelqd 11
                   C++C a+ ++
     CCD22556.1 31 CSQCQAKYPK 40
                   9999999875 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00072
  zinc_ribbon_2  8 elqdnakF...CpyCGt 21
                   el+d+a+    Cp+CG 
     CCD22556.1 76 ELEDGAVIkekCPKCGN 92
                   66777777777777774 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.024
  zinc_ribbon_2   2 CpnCGaelqdnakFCpyCGtp 22 
                    C++CG              ++
     CCD22556.1 115 CTSCG--------------YK 121
                    55555..............54 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.2    0.0027       1.3      18      47 ..       7      37 ..       2      39 .. 0.81
   2 !    9.5   1.8    0.0024       1.1       9      48 ..      74     122 ..      62     125 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0027
         IBR 18 lkwCprpdCeaiiekseg...cksvtCskCgfe 47
                l+ C   dC++++ + ++   +++++Cs+C+ +
  CCD22556.1  7 LIFCL--DCGNLLDNPSSavdSSEIECSQCQAK 37
                67899..******8877766677799****976 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0024
         IBR   9 kkslesdpn.lkwCprpdCeaii.....eksegcks...........vtCskCgfef 48 
                 k++le+    + +Cp  +C++              +            tC++Cg++f
  CCD22556.1  74 KNELEDGAViKEKCP--KCGNDEmhyhtL------QlrsadegatvfYTCTSCGYKF 122
                 4445543324789*9..999322123330......13345566666789******99 PP

>> DpnI  Dam-replacing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   0.00065      0.31      32      89 ..       8      65 ..       3      76 .. 0.82
   2 ?    6.8   0.4    0.0098       4.8      33      63 ..      86     122 ..      66     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00065
                ---TTT--SS-EE--------EEE-TTT--EEEEEEEES..S--SEEEEEEHHHHHHHHH CS
        DpnI 32 lyCpkCgskklsefennkpvaDfyCesckeefeLkskks..klskkivdgaystmierik 89
                ++C  Cg+  l++ ++  + +++ C++c+ ++  ksk s  k+ ++ +d a+ ++++  k
  CCD22556.1  8 IFCLDCGNL-LDNPSSAVDSSEIECSQCQAKYP-KSKFSdlKVVTSTADDAFPSALRSKK 65
                79******9.9*9999****************6.78777457777888888888776655 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0098
                 --TTT--SS-EE--------E.....EE.-TTT--EE CS
        DpnI  33 yCpkCgskklsefennkpvaD.....fy.Cesckeef 63 
                  CpkCg+ +++ ++   + aD     fy C+sc  +f
  CCD22556.1  86 KCPKCGNDEMHYHTLQLRSADegatvFYtCTSCGYKF 122
                 6*********999877777775665554588887776 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2       0.5   2.4e+02      14      23 ..      28      37 ..      24      40 .. 0.80
   2 ?    3.4   0.1      0.24   1.2e+02      16      21 ..      86      91 ..      68      93 .. 0.86
   3 ?   11.2   0.1   0.00081      0.39      14      26 .]     112     124 ..      95     124 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.5
   zf-H2C2_2 14 pyeCplCdka 23
                + eC+ C  +
  CCD22556.1 28 EIECSQCQAK 37
                579****866 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.24
   zf-H2C2_2 16 eCplCd 21
                +Cp+C+
  CCD22556.1 86 KCPKCG 91
                8****7 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00081
   zf-H2C2_2  14 pyeCplCdkaFkt 26 
                 +y+C +C+++F t
  CCD22556.1 112 FYTCTSCGYKFRT 124
                 49*********75 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2     0.039        19      21      32 ..       9      20 ..       5      30 .. 0.84
   2 ?   14.7   2.5   3.4e-05     0.017       2      28 ..      86     121 ..      85     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.039
                  EESSSSBEEEEC CS
  TF_Zn_Ribbon 21 vCtdCGlVledn 32
                  +C dCG++l++ 
    CCD22556.1  9 FCLDCGNLLDNP 20
                  79*****99865 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3.4e-05
                   EETTTTCEEC........HEETSTTCE.EESSSSBE CS
  TF_Zn_Ribbon   2 kCPnCgstnl........veDpergel.vCtdCGlV 28 
                   kCP+Cg++++          D+  + + +Ct+CG+ 
    CCD22556.1  86 KCPKCGNDEMhyhtlqlrSADEGATVFyTCTSCGYK 121
                   8******99889****885555444444******85 PP

>> DUF523  Protein of unknown function (DUF523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   4.6e-05     0.022      57     120 ..      45     111 ..      14     121 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.6e-05
      DUF523  57 akrvlkkegedvtealekgaeeale.elkeeei.kgailkekSPSCGveki.Ydgtfskkl.vegeGv 120
                 + +v++++ +d   +  +  +++++ +lk++e+ +ga++kek P CG +++ Y+ t++ ++  eg+ v
  CCD22556.1  45 DLKVVTSTADDAFPSALRSKKSVVKtSLKKNELeDGAVIKEKCPKCGNDEMhYH-TLQLRSaDEGATV 111
                 445777777776666555556655525565555379***************776.4333332555555 PP

>> Ogr_Delta  Ogr/Delta-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1       0.6   2.9e+02       1       8 [.      30      37 ..      30      44 .. 0.84
   2 ?   14.6   2.0   5.1e-05     0.025       1      40 [.      86     125 ..      86     126 .] 0.85

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.6
   Ogr_Delta  1 rCPhCgap 8 
                +C +C+a+
  CCD22556.1 30 ECSQCQAK 37
                6*****98 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 5.1e-05
   Ogr_Delta   1 rCPhCga.paaartsrnlskd.vreryyqCsnfeCgatfvaa 40 
                 +CP+Cg+ +++  t +  s+d ++ ++y C+   Cg++f+++
  CCD22556.1  86 KCPKCGNdEMHYHTLQLRSADeGATVFYTCTS--CGYKFRTN 125
                 6*****8469999988888864777*******..******98 PP

>> Baculo_p48  Baculovirus P48 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.3e-05     0.035     115     165 ..       8      68 ..       2      87 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.3e-05
  Baculo_p48 115 ivCqkCa..........pkikleCleCkivylaealssLdsslqeGWdiflrpilglilll 165
                 i C +C           +   +eC +C+++y + ++s L ++     d f  ++ ++  ++
  CCD22556.1   8 IFCLDCGnlldnpssavDSSEIECSQCQAKYPKSKFSDLKVVTSTADDAFPSALRSKKSVV 68 
                 568888778888887778899**********************999999999888776555 PP

>> zf-C4_Topoisom  Topoisomerase DNA binding C4 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2       1.5   7.1e+02       2      10 ..      29      37 ..      28      43 .. 0.80
   2 ?   13.8   2.1   7.8e-05     0.038       2      26 ..      85     117 ..      84     126 .] 0.70

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.5
                    EE-SSS--E CS
  zf-C4_Topoisom  2 ekCPkCggd 10
                    ++C +C ++
      CCD22556.1 29 IECSQCQAK 37
                    589999864 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 7.8e-05
                     EE-SSS-.-E.....EEEEE-SSS..EEEEESS CS
  zf-C4_Topoisom   2 ekCPkCg.gd.....LvlkrgkkG..kFvGCsn 26 
                     ekCPkCg ++     L+l++   G   F+ C++
      CCD22556.1  85 EKCPKCGnDEmhyhtLQLRSADEGatVFYTCTS 117
                     8******77733333446888888888888886 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.8     0.072        35       9      37 ..      10      39 ..       2      59 .. 0.62
   2 ?   11.2   0.9   0.00077      0.37       5      36 ..      86     120 ..      84     126 .] 0.73

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.072
  Lar_restr_allev  9 CggravlersqrvvaeigqcvyCadCga..s 37
                     C   + l  +++ + + +  ++C +C a   
       CCD22556.1 10 CLDCGNLLDNPSSAVDSS-EIECSQCQAkyP 39
                     444444444444444333.788888888442 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00077
  Lar_restr_allev   5 pCPfCggravlersqrvvaeigq...cvyCadCga 36 
                       CP Cg+++ + ++ + ++  +    + +C+ Cg+
       CCD22556.1  86 KCPKCGNDEMHYHTLQLRSADEGatvFYTCTSCGY 120
                      7*****99987776555554444688999*99**9 PP

>> Mu-like_Com  Mu-like prophage protein Com
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.068        33       7      30 ..      10      34 ..       7      38 .. 0.83
   2 ?    7.1   0.0    0.0076       3.7      23      32 ..      83      92 ..      72     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.068
  Mu-like_Com  7 CGeCaRLLaK.aeAlDeltiKCPRC 30
                 C +C  LL   + A+D  +i C  C
   CCD22556.1 10 CLDCGNLLDNpSSAVDSSEIECSQC 34
                 88899999653789********999 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0076
  Mu-like_Com 23 ltiKCPRCGt 32
                 ++ KCP+CG 
   CCD22556.1 83 IKEKCPKCGN 92
                 5669*****5 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0       0.3   1.5e+02      17      25 ..       8      16 ..       6      18 .. 0.60
   2 ?    4.5   0.3     0.051        25       1       9 [.      27      35 ..      27      41 .. 0.82
   3 ?    8.3   0.5    0.0032       1.6       4      10 ..      86      92 ..      83      93 .. 0.63
   4 ?    5.6   0.5     0.022        11      18      26 .]     114     122 ..     113     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.3
  zf-ribbon_3 17 nvCpyCGtk 25
                 ++C  CG  
   CCD22556.1  8 IFCLDCGNL 16
                 466666654 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.051
  zf-ribbon_3  1 stvrCPnCG 9 
                 s+++C++C 
   CCD22556.1 27 SEIECSQCQ 35
                 589*****5 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0032
  zf-ribbon_3  4 rCPnCGa 10
                 +CP+CG+
   CCD22556.1 86 KCPKCGN 92
                 5666664 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.022
  zf-ribbon_3  18 vCpyCGtkl 26 
                  +C++CG+k+
   CCD22556.1 114 TCTSCGYKF 122
                  6*****985 PP

>> Baculo_LEF5_C  Baculoviridae late expression factor 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       8.9   4.3e+03      37      40 ..      31      34 ..      29      36 .. 0.78
   2 ?    0.7   0.1      0.89   4.3e+02      35      41 ..      85      91 ..      79      92 .. 0.79
   3 ?   11.8   0.0    0.0003      0.15      23      41 ..     101     119 ..      98     120 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 8.9
  Baculo_LEF5_C 37 CskC 40
                   Cs+C
     CCD22556.1 31 CSQC 34
                   9999 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.89
  Baculo_LEF5_C 35 ryCskCg 41
                     C kCg
     CCD22556.1 85 EKCPKCG 91
                   57****9 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.0003
  Baculo_LEF5_C  23 QnRagDEivsfvryCskCg 41 
                    Q+R+ DE + +  +C  Cg
     CCD22556.1 101 QLRSADEGATVFYTCTSCG 119
                    9*****************9 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.7     0.019       9.1      69      99 ..      27      97 ..       2     121 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.019
                -EEEETTTS-EEECHH.HHH.......................................S-TTTSSS-EEE CS
        HypA 69 vkvrCreCgkefelee.kal.......................................rCpkCgsadvei 99
                 +++C++C++++ +++ ++l                                       +CpkCg+ +++ 
  CCD22556.1 27 SEIECSQCQAKYPKSKfSDLkvvtstaddafpsalrskksvvktslkkneledgavikeKCPKCGNDEMHY 97
                5789*****99998764233678999***************************************998775 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   0.00024      0.12     155     210 ..      65     123 ..      27     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
  tRNA-synt_1f 155 keilekyrgeereetyspylpvcekcgr....vdttevvevdaeeeeieYkceecGeeee 210
                   k+++++ +++++ e+  +++  c+kcg      +t ++ + d e+ ++ Y+c++cG++ +
    CCD22556.1  65 KSVVKTSLKKNELEDGAVIKEKCPKCGNdemhYHTLQLRSAD-EGATVFYTCTSCGYKFR 123
                   578889999999999***********9722112344455555.999**********9865 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.2    0.0028       1.4      13      38 ..       9      38 ..       5      44 .. 0.87
   2 ?    4.4   0.7     0.073        35      13      38 ..      86     122 ..      83     124 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0028
                B-TTT-SB-...-S.SSS-EEEETTT--EE CS
        C1_1 13 fCkhCgefl...wg.kekqglkCswCkllv 38
                fC  Cg++l   +    +  + Cs+C+ ++
  CCD22556.1  9 FCLDCGNLLdnpSSaVDSSEIECSQCQAKY 38
                8********99955599999*******887 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.073
                 B-TTT-SB-...........-SSSS-EEEETTT--EE CS
        C1_1  13 fCkhCgefl...........wgkekqglkCswCkllv 38 
                 +C +Cg+              +++++ ++C+ C++++
  CCD22556.1  86 KCPKCGNDEmhyhtlqlrsaDEGATVFYTCTSCGYKF 122
                 56666654446666666663347889999****9975 PP

>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2         5   2.4e+03      23      27 ..      10      14 ..       5      15 .. 0.78
   2 ?    1.0   0.1      0.67   3.2e+02       1       6 [.      31      36 ..      25      41 .. 0.75
   3 ?   11.6   0.3   0.00033      0.16       1      33 [.      87     125 ..      87     126 .] 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 5
        GATA 23 CnaCG 27
                C +CG
  CCD22556.1 10 CLDCG 14
                88998 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.67
        GATA  1 CsnCgt 6 
                Cs+C++
  CCD22556.1 31 CSQCQA 36
                677764 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00033
        GATA   1 CsnCgttk....TplWRrgpdgnksL...CnaCGlyykkk 33 
                 C +Cg ++    T + R++ +g++ +   C++CG +++ +
  CCD22556.1  87 CPKCGNDEmhyhTLQLRSADEGAT-VfytCTSCGYKFRTN 125
                 999**9999999***********9.4466********975 PP

>> DUF2072  Zn-ribbon containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.87   4.2e+02       4      32 ..      10      38 ..       9      76 .. 0.63
   2 ?   11.6   0.3   0.00053      0.26       8      34 ..      74      99 ..      69     117 .. 0.82
   3 ?    0.7   0.1       1.2   5.7e+02      18      28 ..     111     121 ..      99     125 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.87
     DUF2072  4 CtkCekvfedgskeilkGCpsCGgkkFly 32
                C +C++++++ s+ + +   +C   + +y
  CCD22556.1 10 CLDCGNLLDNPSSAVDSSEIECSQCQAKY 38
                88888888888887776644444444444 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00053
     DUF2072  8 ekvfedgskeilkGCpsCGgkkFlyvk 34
                ++++edg+  i++ Cp+CG     y  
  CCD22556.1 74 KNELEDGAV-IKEKCPKCGNDEMHYHT 99
                57899**98.**********9999954 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 1.2
     DUF2072  18 ilkGCpsCGgk 28 
                 +   C sCG k
  CCD22556.1 111 VFYTCTSCGYK 121
                 55567777764 PP

>> eIF-5_eIF-2B  Domain found in IF2B/IF5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.3      0.28   1.4e+02      88     116 ..       8      36 ..       3      37 .. 0.70
   2 ?   10.2   0.4    0.0011      0.52      89     116 ..      86     120 ..      59     121 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.28
                   TSTSSSTSTCEEECCSSSCEEEEESSSTC CS
  eIF-5_eIF-2B  88 VlCkeCkspetelekeerllvlkCkaCga 116
                   + C  C++   + +   + + ++C++C+a
    CCD22556.1   8 IFCLDCGNLLDNPSSAVDSSEIECSQCQA 36 
                   78999998666666655555589999987 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0011
                   STSSSTSTCEEECC.......SSSCEEEEESSSTC CS
  eIF-5_eIF-2B  89 lCkeCkspetelek.......eerllvlkCkaCga 116
                    C++C++ e++ ++       e+ +++ +C++Cg 
    CCD22556.1  86 KCPKCGNDEMHYHTlqlrsadEGATVFYTCTSCGY 120
                   5********999888888887789999******97 PP

>> CpXC  CpXC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3       1.2     6e+02      37      46 ..      28      37 ..      25      44 .. 0.74
   2 ?   11.0   0.1   0.00068      0.33      27      60 ..      74     107 ..      63     113 .. 0.77
   3 ?    4.7   0.2      0.06        29      35      49 ..     110     124 ..     106     126 .] 0.78

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.2
        CpXC 37 eatCpkCgat 46
                e++C +C+a+
  CCD22556.1 28 EIECSQCQAK 37
                5677777765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00068
        CpXC  27 keklldgslfeatCpkCgatakleapllyhdpek 60 
                 k++l dg + + +CpkCg++ +  + l    +++
  CCD22556.1  74 KNELEDGAVIKEKCPKCGNDEMHYHTLQLRSADE 107
                 778999************9998877776655555 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.06
        CpXC  35 lfeatCpkCgatakl 49 
                    +tC +Cg++++ 
  CCD22556.1 110 TVFYTCTSCGYKFRT 124
                 56689******9986 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.2     0.029        14      31      56 ..      10      38 ..       7      41 .. 0.88
   2 ?    5.2   2.5     0.042        21      30      56 ..      86     122 ..      79     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.029
  OrfB_Zn_ribbon 31 CseCgsknke...alsgrtfkCpnCgfea 56
                    C  Cg  +++   a+++ + +C++C++++
      CCD22556.1 10 CLDCGNLLDNpssAVDSSEIECSQCQAKY 38
                    88999999999999999999***999875 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.042
  OrfB_Zn_ribbon  30 tCseCgsknke..........alsgrtfkCpnCgfea 56 
                     +C++Cg    +          + ++  ++C++Cg+++
      CCD22556.1  86 KCPKCGNDEMHyhtlqlrsadEGATVFYTCTSCGYKF 122
                     7999998887778888887433344447899999986 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0       0.2        96       2       9 ..       9      16 ..       9      25 .. 0.87
   2 ?   -0.5   0.6       2.5   1.2e+03       3       6 ..      31      34 ..      31      38 .. 0.71
   3 ?    7.3   1.4    0.0093       4.5       3      30 ..      87     120 ..      87     121 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.2
                B-TTT--B CS
   Nudix_N_2  2 FCsqCGtp 9 
                FC  CG+ 
  CCD22556.1  9 FCLDCGNL 16
                9*****85 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.5
                -TTT CS
   Nudix_N_2  3 CsqC 6 
                CsqC
  CCD22556.1 31 CSQC 34
                7777 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0093
                 -TTT-......-B-EEE--TT-SS-EEEETTTTE CS
   Nudix_N_2   3 CsqCG......tpvelripdgDnreRlvCpaCgt 30 
                 C++CG      ++++lr  d++    ++C++Cg+
  CCD22556.1  87 CPKCGndemhyHTLQLRSADEGATVFYTCTSCGY 120
                 9999933333334558888889999999**9997 PP

>> DNA_RNApol_7kD  DNA directed RNA polymerase, 7 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.4   6.8e+02      18      24 ..       8      14 ..       4      17 .. 0.72
   2 ?    1.0   0.1      0.73   3.5e+02       3       9 ..      31      37 ..      23      42 .. 0.74
   3 ?    5.7   0.2     0.024        12       8      24 ..      73      91 ..      72      92 .. 0.83
   4 ?    4.4   0.4      0.06        29       1      10 [.     113     122 ..     113     126 .] 0.64

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.4
                    ---SSS- CS
  DNA_RNApol_7kD 18 iRCkeCG 24
                    i C +CG
      CCD22556.1  8 IFCLDCG 14
                    5677777 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.73
                    -SSS--B CS
  DNA_RNApol_7kD  3 CgeCgae 9 
                    C +C+a+
      CCD22556.1 31 CSQCQAK 37
                    6677665 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.024
                    -B----SSS--..--SSS- CS
  DNA_RNApol_7kD  8 aevslkkgdpi..RCkeCG 24
                    ++++l+ g++i  +C +CG
      CCD22556.1 73 KKNELEDGAVIkeKCPKCG 91
                    57899999999555****9 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.06
                     -B-SSS--B- CS
  DNA_RNApol_7kD   1 YiCgeCgaev 10 
                     Y+C  Cg ++
      CCD22556.1 113 YTCTSCGYKF 122
                     6666666655 PP

>> Stc1  Stc1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.4    0.0013      0.65      49      70 ..      25      46 ..       8      56 .. 0.84
   2 ?    3.9   7.3      0.17        81       2      61 ..      31      93 ..      31     125 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0013
                ---EEE-SSS--EEESTTS-HH CS
        Stc1 49 qateleCsaCqktkpldeFsks 70
                   e+eCs Cq   p ++Fs  
  CCD22556.1 25 DSSEIECSQCQAKYPKSKFSDL 46
                56799**************975 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.17
                -SSS--EEETTTS-HHHHHTT..TTEEEE-.S-.......----TTTS-----EEE-SSS--E CS
        Stc1  2 CkeckkkkplseFSkkqlkkl..ekklaee.kakvkkakskikCkectakqateleCsaCqkt 61
                C++c+ k p+s+FS+ ++     ++++ +  ++k + +k+ +k +e  ++++ + +C  C+++
  CCD22556.1 31 CSQCQAKYPKSKFSDLKVVTStaDDAFPSAlRSKKSVVKTSLKKNELEDGAVIKEKCPKCGND 93
                99************9555443334444444455555666677777777777777777777544 PP

>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.6      0.14        69      11      23 ..      26      38 ..      10      40 .. 0.70
   2 ?    2.1   0.1      0.45   2.2e+02      15      21 ..      86      92 ..      74      98 .. 0.84
   3 ?    5.7   0.2     0.035        17      12      23 ..     111     122 ..     103     122 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.14
      zf-AN1 11 flpfkCryCgkvF 23
                +  ++C++C+ ++
  CCD22556.1 26 SSEIECSQCQAKY 38
                4449******988 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.45
      zf-AN1 15 kCryCgk 21
                kC++Cg+
  CCD22556.1 86 KCPKCGN 92
                8999*97 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.035
      zf-AN1  12 lpfkCryCgkvF 23 
                 + ++C +Cg +F
  CCD22556.1 111 VFYTCTSCGYKF 122
                 459******998 PP

>> DUF983  Protein of unknown function (DUF983)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.64   3.1e+02      10      23 ..      30      43 ..      26      51 .. 0.80
   2 ?    3.8   3.7      0.15        74       7      22 ..      83      98 ..      81     119 .. 0.65
   3 ?    1.4   0.1      0.91   4.4e+02      10      20 ..     114     124 ..     106     126 .] 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.64
      DUF983 10 aCeaCgldlshara 23
                +C++C++++ + + 
  CCD22556.1 30 ECSQCQAKYPKSKF 43
                7******9987665 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.15
      DUF983  7 vadaCeaCgldlshar 22
                ++++C++Cg d  h+ 
  CCD22556.1 83 IKEKCPKCGNDEMHYH 98
                589******9966653 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.91
      DUF983  10 aCeaCgldlsh 20 
                 +C +Cg +++ 
  CCD22556.1 114 TCTSCGYKFRT 124
                 8*****99976 PP

>> Ribosomal_S27e  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.051        25      25      39 ..       6      20 ..       2      23 .. 0.85
   2 ?   -0.0   0.1       1.5   7.3e+02       7      14 ..      28      35 ..      25      38 .. 0.66
   3 ?    3.0   3.6      0.17        81       8      18 ..      85      95 ..      79     123 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.051
                    S-EEESSSTCEEEEE CS
  Ribosomal_S27e 25 tvvkCisCgkvLveP 39
                    + + C+ Cg+ L +P
      CCD22556.1  6 SLIFCLDCGNLLDNP 20
                    5789*****999888 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.5
                    EEE-TTTS CS
  Ribosomal_S27e  7 dvkCpdCe 14
                    ++ C +C+
      CCD22556.1 28 EIECSQCQ 35
                    45666665 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.17
                    EE-TTTS-EEE CS
  Ribosomal_S27e  8 vkCpdCenetv 18
                     kCp+C+n  +
      CCD22556.1 85 EKCPKCGNDEM 95
                    59*****9876 PP

>> zf-RRN7  Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       5.9   2.9e+03       7      12 ..      10      15 ..       8      17 .. 0.67
   2 ?    2.7   0.1      0.21     1e+02       4      12 ..      28      36 ..      25      40 .. 0.82
   3 ?    5.8   0.0     0.023        11       5      14 ..      85      94 ..      83      97 .. 0.83
   4 ?    2.0   2.8      0.34   1.7e+02      21      28 ..     112     119 ..     112     120 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.9
     zf-RRN7  7 CgvCgc 12
                C  Cg+
  CCD22556.1 10 CLDCGN 15
                666765 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.21
     zf-RRN7  4 gppCgvCgc 12
                ++ C +C +
  CCD22556.1 28 EIECSQCQA 36
                678****98 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.023
     zf-RRN7  5 ppCgvCgcrs 14
                + C+ Cg+++
  CCD22556.1 85 EKCPKCGNDE 94
                79*****986 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.34
     zf-RRN7  21 fyyCrrCh 28 
                 fy C++C+
  CCD22556.1 112 FYTCTSCG 119
                 8******9 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1       2.1     1e+03       7      11 ..      10      14 ..       9      18 .. 0.86
   2 ?    3.1   0.2      0.18        88       7      15 ..      31      39 ..      30      43 .. 0.87
   3 ?    2.7   0.1      0.24   1.2e+02       6      12 ..      86      92 ..      86      97 .. 0.78
   4 ?    7.1   1.4     0.011       5.2       5      16 ..     113     122 ..     113     124 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 2.1
  Zn_ribbon_SprT  7 CtgCg 11
                    C +Cg
      CCD22556.1 10 CLDCG 14
                    9***9 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.18
  Zn_ribbon_SprT  7 CtgCgreyt 15
                    C +C+ +y+
      CCD22556.1 31 CSQCQAKYP 39
                    9****9987 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.24
  Zn_ribbon_SprT  6 rCtgCgr 12
                    +C+ Cg+
      CCD22556.1 86 KCPKCGN 92
                    6999995 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.011
  Zn_ribbon_SprT   5 YrCtgCgreyth 16 
                     Y+Ct+Cg  y++
      CCD22556.1 113 YTCTSCG--YKF 122
                     9******..555 PP

>> zinc_ribbon_15  zinc-ribbon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.7      0.15        72      39      76 ..       9      39 ..       2      46 .. 0.61
   2 ?    3.3   8.6      0.28   1.4e+02      38      74 ..      29      93 ..      22     126 .] 0.85

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.15
  zinc_ribbon_15 39 acskCkslleaskelgkeiekkessekkeCknCgkeve 76
                     c +C++ll + +       ++ +s++ eC++C+++  
      CCD22556.1  9 FCLDCGNLLDNPS-------SAVDSSEIECSQCQAKYP 39
                    5666666666655.......333444677777776654 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.28
  zinc_ribbon_15 38 lacskCkslleaskelgkeiekkesse............................kkeCknCgke 74
                    + cs+C++++++sk +  ++ ++++ +                            k++C++Cg+ 
      CCD22556.1 29 IECSQCQAKYPKSKFSDLKVVTSTADDafpsalrskksvvktslkkneledgaviKEKCPKCGND 93
                    78999999999999666666555555589999999999999999999999999999999999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        61  (0.00340231); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.65
# Mc/sec: 587.80
//
Query:       CCD22557.1  [L=128]
Description: hypothetical protein NDAI_0A04000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.015   16.1   0.3      0.018   15.9   0.3    1.2  1  PRCC          Mitotic checkpoint regulator, MAD2B-interacting
       0.07   13.0   0.4        0.1   12.5   0.4    1.2  1  Dynactin_p22  Dynactin subunit p22


Domain annotation for each model (and alignments):
>> PRCC  Mitotic checkpoint regulator, MAD2B-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   0.3     2e-06     0.018     148     214 .]      59     128 .]      31     128 .] 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2e-06
        PRCC 148 kaneqwlakalteekaekk...gnpvrgqakrKHQltyLahqAkeneeeLeeswAenrrnRkqaqaKYGF 214
                 ++++  +++ l  +k++ +   +  v+ +   K Ql++L+ +A  n+++L+ +    ++ ++ ++++ G+
  CCD22557.1  59 EDEQGIMQATLLNNKTHGEvtdSPVVSNVYDPKNQLRSLVKNAERNKDALKRRNEHIKKMKANSRSRFGW 128
                 44444444444444444446634455666999********************999999999999999999 PP

>> Dynactin_p22  Dynactin subunit p22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   1.1e-05       0.1      19      65 ..      72     118 ..      64     125 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.1e-05
  Dynactin_p22  19 eekekekedesiidsLakvqkklssavskrekikellkkleelekyL 65 
                   ++   e +d+++++++ + +++l+s+v++ e+ k++lk+ +e+ k +
    CCD22557.1  72 NKTHGEVTDSPVVSNVYDPKNQLRSLVKNAERNKDALKRRNEHIKKM 118
                   55555666699******************************998866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1146  (0.0639188); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 979.61
//
Query:       CCD22558.1  [L=413]
Description: hypothetical protein NDAI_0A04010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-17   62.8   0.0    5.7e-15   55.3   0.0    2.6  3  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   3.2e-19   5.7e-15       1     117 [.      12     137 ..      12     178 .. 0.87
   2 ?   -1.9   0.0     0.092   1.7e+03      99     128 ..     225     257 ..     202     274 .. 0.70
   3 !    4.4   0.0    0.0011        20     206     235 ..     347     375 ..     344     386 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 3.2e-19
                   EEEEEEBB-STTHHHHHHHHHHHHHHHHHHT...TESEEEEETTTTTBS..SSHHHHHHHHB.HSSSHHHHHHHHHHHHHTEEEEEEEEEEEC.... CS
  CN_hydrolase   1 rvAvvQlpqkaadleanlqklleliaeAark...gadLivlPElfitgy..keeahfleaAe.aglgetlallaalarkngiavviglierel.... 87 
                   ++A+vQl++   + ++n+ ++ +l+++ ++k     d+iv+PE+++tgy   +++h++++   + ++e+++l +++++ ++++ vig++er      
    CCD22558.1  12 KIALVQLNSQVNQVTQNINRTWSLLNKFKEKthkTPDIIVFPEFALTGYnfHSRDHIFPFCSlTKESESFKLAKQVSKLFNCYTVIGYPERTStnni 108
                   69*******778888888888888888777788799*************99899999998889999*************************779**8 PP

                   .CTTEEEEEEEEEEEETTSEEEEEEE-SS-- CS
  CN_hydrolase  88 .tngklqayntavlldldgklvgkyrKlhLf 117
                    ++  l  yn+a++ +++g+l+ +yrK+ L 
    CCD22558.1 109 dDGEPL--YNSALVTSPQGNLIFNYRKSFLY 137
                   555555..*******************9886 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.092
                   EEEETTSEE..EEEEE-SS--E.ECTTSCECCG CS
  CN_hydrolase  99 vlldldgkl..vgkyrKlhLfp.geprpptave 128
                   ++ ++++kl  +++ rKl+L p g ++  ++ +
    CCD22558.1 225 IIEKNEKKLeiLQNLRKLDLPPyGSQNDFQFDL 257
                   444555555779999999998877777666655 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0011
                   EEEEEBEEEHCETTEEEE--EEEE-TTS-E CS
  CN_hydrolase 206 viaanqvggyeqlilwpvghSaiidpdGri 235
                   ++ an++g+ e++ +++ g+S i+ ++G++
    CCD22558.1 347 MVNANRCGV-EDGTTVFAGSSGIYKFNGKM 375
                   6789*****.*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3236.53
//
Query:       CCD22559.1  [L=913]
Description: hypothetical protein NDAI_0A04020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-49  167.1   1.5    6.3e-49  167.1   1.5    2.6  2  LicD      LicD family
  ------ inclusion threshold ------
       0.11   12.5   0.1       0.31   11.1   0.1    1.6  1  DUF1192   Protein of unknown function (DUF1192)


Domain annotation for each model (and alignments):
>> LicD  LicD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   2.0      0.14   1.3e+03     137     183 ..     347     388 ..     254     433 .. 0.55
   2 !  167.1   1.5   7.1e-53   6.3e-49       2     227 .]     451     697 ..     450     697 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.14
        LicD 137 elkkkillkkksfklkklnkkkklkkleklekkkeydlkkseyiavl 183
                 ++++ i+lk+  f++  ++k kkl+   +       ++++++y++ l
  CCD22559.1 347 YDNDFIHLKQTDFEFDPFDKIKKLETNIEN-----LNSHEKNYLESL 388
                 333333333333333333332222222221.....222222222222 PP

  == domain 2  score: 167.1 bits;  conditional E-value: 7.1e-53
        LicD   2 kkngleywLsgGTllGavRhggfIPWDDDiDlqmprkdyerLaevfnq.lilkkedlreaekdknylenfaklldkntsiterkngngkn......... 90 
                 k+ngl++wLs+GTl+G++++g ++PWD+D+Dlqmp+++++ L e+fnq lil  ed+re        +n++ lld+++s+t r++gng+n         
  CCD22559.1 451 KANGLISWLSHGTLFGYLYNGQAFPWDNDFDLQMPIRHLHYLSEHFNQsLIL--EDPRE--------GNGKFLLDVGSSLTIRTKGNGENnidarfidv 539
                 79**********************************************9999..9**99........99****************************** PP

        LicD  91 dsglyiDIfpl....dyvpkskll........ikkkkekeklkkklalk........kslskkdkkelkkkillkkksfklkklnkkkklkkleklekk 169
                 dsg+yiDI++l    ++v+++  +        ++++ +++k k+    +        ++l++  ++el+ +i++++  f  + + k  +l k e ++k+
  CCD22559.1 540 DSGIYIDITGLsvssEKVQDN--MapyidiekFNEVVLQNKTKF----DstfleeegEGLASLSITELQSYINEHEDEFDGTIKYKIGELIKGETERKT 632
                 ***********7665444444..145887665444444444333....244458888999999999999999999999988888888888888888777 PP

        LicD 170 k....eydlkkseyiavlksgkl...rnkeilpleelsplkkvkFegvevpipnnydkyLtelYg 227
                 +     ++l+ +e+++++ + +l   +n+++ +le+lspl+++ F+gv ++ip+++ + L+++Y+
  CCD22559.1 633 NskffVNNLSRKERYFLNRQFQLyncKNRHFSTLEMLSPLITTSFHGVDALIPHKFITSLRTEYK 697
                 789999999***********99999***************************************6 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   3.4e-05      0.31      12      35 ..     588     611 ..     578     613 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.4e-05
     DUF1192  12 eigqDLslLSveELeerIalLeaE 35 
                 e g+ L +LS++EL+ +I ++e+E
  CCD22559.1 588 EEGEGLASLSITELQSYINEHEDE 611
                 56889*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 6182.84
//
Query:       CCD22560.1  [L=355]
Description: hypothetical protein NDAI_0A04030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-13   50.8   2.0    2.8e-13   49.6   2.0    1.7  1  HLH       Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
        1.2    9.8   6.7        2.5    8.8   2.8    2.9  2  SlyX      SlyX


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   2.0   3.1e-17   2.8e-13       1      52 [.     239     286 ..     239     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 3.1e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHCSTCSTTSS-STHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrellPslppskKlsKaeiLekAveYIkhL 52 
                 rr++h+e+E+rRR++iN+a++ L ellP     +  +Ka+iL++A eYI +L
  CCD22560.1 239 RRESHKEVEKRRRKNINDAINVLSELLP----VTESNKAAILTRAAEYIGKL 286
                 89**************************....78899************988 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.06   5.4e+02      24      53 ..     156     185 ..     151     214 .. 0.79
   2 ?    8.8   2.8   0.00028       2.5      13      47 ..     309     343 ..     298     353 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.06
                 HHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX  24 dvvaeqqqqidrlqrqlrllaerlkelees 53 
                 +++ + q++i++ q + ++  ++l   +++
  CCD22560.1 156 EEIRNIQEDIEKHQNETNAALRQLTGTDNN 185
                 667778888999988888888888555544 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00028
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
        SlyX  13 afqedtieeLndvvaeqqqqidrlqrqlrllaerl 47 
                 + +  + e+L++++ +  +qi+ l+r+lr+l+e+ 
  CCD22560.1 309 SQLATANEKLQAELKKAYKQIESLERKLRHLNEKT 343
                 55556668999999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2309  (0.128786); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.48
# Mc/sec: 2216.21
//
Query:       CCD22561.1  [L=781]
Description: hypothetical protein NDAI_0A04040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.4e-35  121.7   0.0    5.7e-35  121.0   0.0    1.3  1  Pkinase      Protein kinase domain
    1.8e-13   50.4   0.0    3.4e-13   49.5   0.0    1.4  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0013   18.1   0.0     0.0023   17.3   0.0    1.3  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.063   12.6   0.0       0.11   11.8   0.0    1.3  1  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.0   0.0   1.3e-38   5.7e-35       3     264 .]     238     543 ..     237     543 .. 0.83

  Alignments for each domain:
  == domain 1  score: 121.0 bits;  conditional E-value: 1.3e-38
                 EEEEEEEESSEEEEEEEET.TTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCT.TB--EEEEEEESSEEE......EEEE--TTEBHHHHHHH CS
     Pkinase   3 kleklGeGsfGkVykavek.etgkivAvKkikkekakkkke..kkvlrEikilkklkhp.nivrlyevfeekdely......lvleyveggeladller 91 
                 +++++G+G++ +V k++++ ++++i+A+ ki+   ++  ++  k+  +E  i k+l+h+ +i++ ++ ++ +++ y      +++e+  ++ l++l+e+
  CCD22561.1 238 DNKTIGSGGSCEVRKVKSAyRQKEIYALEKINMIYDETPEKfyKRCSKEFIIAKTLSHNiHICHSFYLLKVPTTTYttrgwgFIMELGVKD-LFQLIEK 335
                 5789************987356789***999987666666667**************7648998888888866666666677*****9966.*****95 PP

                 HSS..--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHH........... CS
     Pkinase  92 kgs..lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk........ltsfvgtseYlAPEvl........... 169
                 +g   ++ +e   i+kqi+e+++++H++gi HrDlKpeN+L++++g  K++DFG++  ++++ +         + ++g++ Y +PEv+           
  CCD22561.1 336 SGWknVPINEKYCIFKQIAEAVKFCHDQGIAHRDLKPENVLLSKDGICKLADFGISDWYHKDPNdltspiksCEGMIGSPPYTPPEVMywdskkhypke 434
                 44333777777789***********************************************9999****999999***************987665544 PP

                 TTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS..................-HHHHHHHHHHT-SSG CS
     Pkinase 170 keney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei..................seeakdllkkllkkdp 249
                  +++y    +D ++lG+il++l+++  pf ++ +++   +++++  +  + +++++ +++                       s +a +++ +l + +p
  CCD22561.1 435 LQKPYnPLRMDCYALGIILFTLVNNIIPFIDSCNTDPRFRDFEN--AYNNYINHQNPHFRD---KgnykpgpgpeyrlaknfkSADASRVVWRLSDPNP 528
                 3477755689********************77777766666666..223333333333333...244477999999*********************** PP

                 CCSTTHHHHHTSGGG CS
     Pkinase 250 kkRltaeellqhpyl 264
                 ++R+t+++l ++p++
  CCD22561.1 529 ETRYTMDDLFDDPWF 543
                 **************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   7.6e-17   3.4e-13       5     196 ..     240     454 ..     237     479 .. 0.74

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 7.6e-17
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE......SSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct......keepllivteyvkgGdLlkfLrkk 95 
                  k++G+G   +V + +   ++++      + ++ +e+ e+  ++  +e  i k+l ++ +i +   +         ++   +++e+    dL + ++k+
   CCD22561.1 240 KTIGSGGSCEVRKVKSAYRQKEIYALEKINMIYDETPEKFYKRCSKEFIIAKTLsHNIHICHSFYLLKvptttyTTRGWGFIMELG-VKDLFQLIEKS 336
                  78888888888888877555555555567777777777778888888888888844456665444433222333444477888875.459999****9 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.....EETTSSTSGGGGS-HHHHHHSE....... CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey.....vkkeeaklpvkWmapEslkekk....... 181
                    +++ +++++++  q+A+++++ +++ + Hrdl   NvLls++ ++k++DfG+++  +kd +      ++ e+   +  +++pE++   +       
   CCD22561.1 337 GWKNVPINEKYCIFKQIAEAVKFCHDQGIAHRDLKPENVLLSKDGICKLADFGISDWYHKDPNDltspiKSCEGMIGSPPYTPPEVMYWDSkkhypke 434
                  99******************************************************998887765555444555566778888888754433455555 PP

                  .....EEHHHHHHHHHHHHH CS
  Pkinase_Tyr 182 .....ftsksDvWsfGvllw 196
                          + D ++ G++l+
   CCD22561.1 435 lqkpyNPLRMDCYALGIILF 454
                  55553344566666666665 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.2e-07    0.0023     112     165 ..     338     387 ..     323     392 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.2e-07
         Kdo 112 waelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliD 165
                 w++++ + k  ++k+++ +++  h+ g+ H+dl + n+ll +++     + l D
  CCD22561.1 338 WKNVPINEKYCIFKQIAEAVKFCHDQGIAHRDLKPENVLLSKDG----ICKLAD 387
                 666777888899****************************9998....555555 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.5e-05      0.11     157     250 ..     357     463 ..     338     470 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.5e-05
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggft.aLvragtkvvl.seve........kgfaPpEll..gsrggytrknkt.kmthkldaWqlGlviy 241
                  +   +++g+ h +++++n+ll ++g  +l +f+ + +  ++   l s ++          + PpE++   s++ y ++ +       +d ++lG+  +
   CCD22561.1 357 VKFCHDQGIAHRDLKPENVLLSKDGICKLADFGiSDWYHKDPNDLtSPIKscegmigsPPYTPPEVMywDSKKHYPKELQKpYNPLRMDCYALGIILF 454
                  5556899************************97333444554544487778889988889*****9833455558776444045689**********9 PP

  Kinase-like 242 riwclklPl 250
                   +    +P+
   CCD22561.1 455 TLVNNIIPF 463
                  998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       930  (0.0518713); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5360.35
//
Query:       CCD22562.1  [L=451]
Description: hypothetical protein NDAI_0A04050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.032   14.1   5.9       0.35   10.8   0.6    3.2  3  Nore1-SARAH  Novel Ras effector 1 C-terminal SARAH (Sav/Rassf


Domain annotation for each model (and alignments):
>> Nore1-SARAH  Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6     2e-05      0.35      13      31 ..      27      45 ..      27      46 .. 0.89
   2 ?   -2.7   0.0      0.33     6e+03      27      35 ..     318     326 ..     312     328 .. 0.71
   3 ?    4.5   0.1    0.0018        32      12      23 ..     339     350 ..     338     352 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2e-05
  Nore1-SARAH 13 iLeeEEeeeiqqikrkYta 31
                 +L+eEEe+ei+ +++ Y +
   CCD22562.1 27 VLDEEEEDEIKNVENPYLK 45
                 59************99976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.33
  Nore1-SARAH  27 rkYtalrqk 35 
                  +kY+ l++ 
   CCD22562.1 318 AKYESLKDF 326
                  688888865 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0018
  Nore1-SARAH  12 riLeeEEeeeiq 23 
                  ++L++EE++e q
   CCD22562.1 339 TKLNKEENDESQ 350
                  79*******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3415.37
//
Query:       CCD22563.1  [L=1203]
Description: hypothetical protein NDAI_0A04060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-22   77.9   0.0      3e-21   75.7   0.0    2.3  2  RT_RNaseH        RNase H-like domain found in reverse transcr
    1.8e-16   60.0   0.0    1.1e-08   35.0   0.0    2.9  2  RT_RNaseH_2      RNase H-like domain found in reverse transcr
    2.3e-15   56.8   0.0    8.5e-15   55.0   0.0    2.0  1  rve              Integrase core domain
    3.4e-15   56.2   0.1    9.4e-15   54.7   0.1    1.8  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    2.2e-08   34.1   0.9    2.2e-08   34.1   0.9    2.2  2  Integrase_H2C2   Integrase zinc binding domain
  ------ inclusion threshold ------
       0.01   16.4   0.0       0.05   14.2   0.0    2.3  2  gag-asp_proteas  gag-polyprotein putative aspartyl protease
      0.051   13.8   0.2       0.18   12.1   0.2    2.0  1  zf-H2C2          H2C2 zinc finger
      0.059   13.7   0.0       0.22   11.8   0.0    2.1  1  RVP              Retroviral aspartyl protease
      0.065   13.9   0.0       0.24   12.0   0.0    2.1  1  Asp_protease_2   Aspartyl protease
      0.069   12.6   0.0       0.16   11.3   0.0    1.6  1  Asp              Eukaryotic aspartyl protease
       0.49    9.9   5.4       0.22   11.0   0.1    2.9  4  Peptidase_A2B    Ty3 transposon peptidase


Domain annotation for each model (and alignments):
>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   1.9e-24     3e-21       4     105 .]     549     670 ..     547     670 .. 0.90
   2 ?   -3.8   0.0        10   1.6e+04      69      88 ..    1060    1080 ..    1056    1086 .. 0.73

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 1.9e-24
                 S-EEEEEEECTEEEEEEEEEETTE......................EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS--EEEE-SS--T CS
   RT_RNaseH   4 kpfiletDAsddgigavLsqreed..................ge..erpiafaSrklsgaernystiekellAivaalkkfrhylqgrkftvitDhknl 82 
                  p+ ++tDAs + +gav+ q  ++                  g+   +++ f S kl++ae+nys++++ellAi + l++++++l g+++tvitDh+nl
  CCD22563.1 549 YPILIFTDASRYSTGAVVIQLSDKadsrkpiqmiideikernGKvqGKILGFSSYKLTPAEQNYSVYDLELLAIDKVLEQYEQWLIGSPVTVITDHANL 647
                 5889****************4444677788888888887777334579*************************************************** PP

                 TTTT----.---HHHHHHHC-XX CS
   RT_RNaseH  83 kyllskkslngrlarWaleLsey 105
                   l++k  l++r+ r +++L+++
  CCD22563.1 648 SRLTTKVRLTPRISRTMEFLMQF 670
                 *****9999***********998 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 10
                  TS.--EEEE-SS--TTTTT-- CS
   RT_RNaseH   69 qg.rkftvitDhknlkyllsk 88  
                     ++++v++D +  +y+++k
  CCD22563.1 1060 NTdTRIQVMSDEEWYNYIQEK 1080
                  553569999999999998864 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   6.2e-08    0.0001       7      61 ..     527     582 ..     521     594 .. 0.88
   2 !   35.0   0.0     7e-12   1.1e-08      55     100 .]     595     640 ..     585     640 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 6.2e-08
  RT_RNaseH_2   7 kafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgk.erpiafa 61 
                    +++ ke l+  p++  + p  p+ + tDaS +  gav  q +d+   ++pi+++
   CCD22563.1 527 LEYQNFKETLQRLPTIGRFIPGYPILIFTDASRYSTGAVVIQLSDKADsRKPIQMI 582
                  57899***************************************998889999876 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 7e-12
  RT_RNaseH_2  55 erpiafaSrklskaernysttekellAivwalkkfrhyllgrkftv 100
                   ++++f S kl++ae+nys++++ellAi + l++++++l g+++tv
   CCD22563.1 595 GKILGFSSYKLTPAEQNYSVYDLELLAIDKVLEQYEQWLIGSPVTV 640
                  4799***************************************997 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   5.2e-18   8.5e-15       3     117 ..     890    1002 ..     888    1003 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 5.2e-18
         rve    3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftr 98  
                  rp  ++++D+   ++  +++g   +lv+vd f+r+++ +a +++++a+ +++ le+ ++  gg+ p ++l+Dng+ ++  +f + l+  gi++ +t 
  CCD22563.1  890 RPHMIMSADHItDLD-TSKDGYNEILVIVDLFTRYTYLIAAKKQDTAEETFQRLEEKLCLHGGL-PITMLTDNGTKFK-GEFNKNLSWRGINHWNTS 983 
                  788889999997666.678889******************************************.*************.7***************** PP

         rve   99 pgrpqdnGkvErfhrtlkd 117 
                   +r+++nG  Er+++++k+
  CCD22563.1  984 IYRAKSNGANERMNGIIKQ 1002
                  *****************97 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.1   5.7e-18   9.4e-15       2     222 .]     294     452 ..     293     452 .. 0.85

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 5.7e-18
                 E-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   2 pKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                 +K+++++ R+ i     +y+  n+ ++          +++++p + +   +       +           ++ lD+ +aF +v+l++l++ +  fkv  
  CCD22563.1 294 RKRDTEELRLvI-----NYRTANQYVIG---------MESQLPSIYDS--I-------VT-----LPDSAFTVLDITSAFYTVKLDKLSQDFLCFKVG- 363
                 566666666633.....66666666666.........66666666666..2.......11.....356789***************************. PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglki 198
                                          + y   + p+G ++S  lf  f+n++l +  k     +l+ Y+DD+li+ k ++ + +l ++v ++l  +g+++
  CCD22563.1 364 ------------------------NQTYRPLRAPMGYKNSAQLFAAFINHILSSSLK----PHLTIYVDDLLIIGK-PNTIVSLTREVIQHLGGYGIRF 433
                 ........................8899*************************9999....59********99876.6788999999************ PP

                 EGGG-EEE.....ESSEEETTEEE CS
       RVT_1 199 npeKtklvlftvkseevkyLGvtl 222
                 +++K+++      +++++yLG+++
  CCD22563.1 434 SAKKIQFN-----QRSIEYLGYKI 452
                 ********.....********986 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2       8.7   1.4e+04      23      37 ..      26      40 ..      25      41 .. 0.84
   2 !   34.1   0.9   1.3e-11   2.2e-08       9      57 ..     825     874 ..     820     875 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 8.7
  Integrase_H2C2 23 ektlerlrrryyWpg 37
                    ++t+ ++r r  W++
      CCD22563.1 26 NQTIYHIRARHQWKT 40
                    689999999999986 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 1.3e-11
  Integrase_H2C2   9 ilkeaHds.agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     i+ + H +   H Gi+ tl+ +r+ry +  ++k  + +v+sC++Cq +kp
      CCD22563.1 825 IIWNTHINnDMHRGIQETLRCIRKRYNFDDLYKLTQVVVNSCKICQSNKP 874
                     7888999999***************************************8 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.1e-05      0.05       4      50 ..      47      95 ..      44     141 .. 0.62
   2 ?   -3.0   0.0       6.8   1.1e+04      31      66 ..     577     608 ..     562     623 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.1e-05
                     EETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB....TT--EE-TTS CS
  gag-asp_proteas  4 kingkpvkflvDTGAsstiiseelaerlglsrkedk..gkvevktange 50
                      i+ ++v++l+D+G +  +i+e++a+ l+ ++++ +  ++  +k+ +g 
       CCD22563.1 47 WIDKRQVQALLDSGSEINLIQEDVAKMLEHQKNVSRinNNNPIKIECGG 95
                     58999***********************998887662235556666664 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 6.8
                      TTGGGGEB..TT--EE-TTSTT-EEEEEEEEEE.EE CS
  gag-asp_proteas  31 lglsrkedkgkvevktangeveakrvrldsvkiggi 66 
                        ++  +     e+k  ng+v++k   + s k+  +
       CCD22563.1 577 KPIQMII----DEIKERNGKVQGKILGFSSYKLTPA 608
                      4333333....4678888888888877777777665 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   0.00011      0.18       5      39 .]     836     870 ..     833     870 .. 0.97

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
     zf-H2C2   5 HlGinkltallarkYhwlgiketvseVissCkaCq 39 
                 H Gi+ +   ++++Y +  ++++ + V++sCk Cq
  CCD22563.1 836 HRGIQETLRCIRKRYNFDDLYKLTQVVVNSCKICQ 870
                 99********************************9 PP

>> RVP  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.22       5      32 ..      42      69 ..      38     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                SEEEEEETTEEEEEEE-TTBSSEEEES- CS
         RVP  5 PllkvkiggkyieallDtGAdatvisee 32
                P+ ++ i  ++++allD+G ++ +i+e 
  CCD22563.1 42 PMATIWIDKRQVQALLDSGSEINLIQED 69
                999**********************985 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00015      0.24       4      34 ..      47      81 ..      44     138 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
  Asp_protease_2  4 tinGkpvrfllDTGasttlispelaekl....glk 34
                     i+ + v++llD+G+  +li +++a+ l    +++
      CCD22563.1 47 WIDKRQVQALLDSGSEINLIQEDVAKMLehqkNVS 81
                    577789********************994443333 PP

>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001      0.16     193     302 ..      46     145 ..      12     157 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
                 E.EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESEEECCTSSSEE CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 193 v.lcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilglvseeegdlwi 290
                 + + ++++qa+lD+G  +  +++++++ + ++ + +  ++++ + ++C    s++++ +   g  ++++ ++++ + +       ++++  + + +++i
  CCD22563.1  46 IwIDKRQVQALLDSGSEINLIQEDVAKMLEHQKNVSRINNNNPIKIECGGKISMSEYLLL--GSCFKLKERSYTASFH-------VVNI--STNVPKMI 133
                 34678999********************************9*******986666665544..5666666666654433.......3444..55556666 PP

                 EEHHHHTTEEEE CS
                 xxxxxxxxxxxx RF
         Asp 291 LGdvFlrsayvv 302
                 LG   lr+  ++
  CCD22563.1 134 LGIPWLREHGII 145
                 666666655555 PP

>> Peptidase_A2B  Ty3 transposon peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00014      0.22      13      70 ..      20      77 ..      11      91 .. 0.88
   2 ?   -0.2   0.0       0.4   6.5e+02      52     119 ..     286     357 ..     274     371 .. 0.76
   3 ?   -3.9   0.1       5.4   8.8e+03     131     159 ..     857     885 ..     853     889 .. 0.81
   4 ?   -3.8   0.0         5   8.1e+03       9      31 ..    1091    1113 ..    1088    1162 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
  Peptidase_A2B 13 kklsikslpivhyiaipemdktaektikikntkvktlfdsgsptsfirrdivellkle 70
                   + ls + + i h  a  +       ti i++ +v++l+dsgs   +i+ d+ ++l+++
     CCD22563.1 20 QDLSTTNQTIYHIRARHQWKTLPMATIWIDKRQVQALLDSGSEINLIQEDVAKMLEHQ 77
                   6788899999999999999888999****************************99865 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.4
  Peptidase_A2B  52 sgsptsfir.rdivellkleiyetpplrfrgfvatksavtseavtl.dlkvddlqitlaayv..ldkmdyql 119
                      sp  fir rd+ el  +  y t      g+ +   ++    vtl d     l+it a y   ldk+  ++
     CCD22563.1 286 YVSPGFFIRkRDTEELRLVINYRTANQYVIGMESQLPSIYDSIVTLpDSAFTVLDITSAFYTvkLDKLSQDF 357
                    569999**8467777777777999999999999999899999999867888889999988863467776554 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 5.4
  Peptidase_A2B 131 kllytvlntkestdalkpkayrsetvnyv 159
                    kl   v+n+ +  ++ kp  +   +  y+
     CCD22563.1 857 KLTQVVVNSCKICQSNKPTNFSISNYRYI 885
                    77888999999999999999988877776 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 5
  Peptidase_A2B    9 skdqkklsi..kslpivhyiaipem 31  
                     skd++k  i  + +p+v  +   em
     CCD22563.1 1091 SKDRNKKKItkTGKPVVFKV--GEM 1113
                     45543333311445555432..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 8585.27
//
Query:       CCD22564.1  [L=113]
Description: hypothetical protein NDAI_0A04070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-10   39.4   0.0    4.3e-10   39.3   0.0    1.1  1  RRM_5     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
    2.7e-08   33.5   0.2    6.5e-08   32.3   0.2    1.6  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   4.8e-14   4.3e-10      18     104 ..      21     111 ..       4     113 .] 0.80

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 4.8e-14
       RRM_5  18 pgaagvaegsVllVyglepdkvnldk....lFnlfclYgnvervkfl.ktkketalvqmgdasaveravqHLnnaklfgkrlevalSKqqav 104
                 +  a+ +  s l V++l++ k+n+++    l+ lf++Yg+v +v +  k ++++a + m +  ++++a   Ln++  f+++l++ +SK++++
  CCD22564.1  21 KKKAPISPRSTLYVSNLNE-KINPKRlrinLYLLFSIYGEVIKVAISaKKQRGQAYITMKNVDEANLAKISLNDELFFENPLHIEFSKEDSI 111
                 566777888999*****96.6777752222799************97255679***********************************9987 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.2   7.3e-12   6.5e-08       1      69 [.      32     101 ..      32     102 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 7.3e-12
                 EEEESETTTSSHH....HHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvtee....eLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+V+nL++ ++ +    +L+ lFs +G++ ++ ++ +   k +g a++++++ ++A+ A+ +ln + +  ++l
  CCD22564.1  32 LYVSNLNEKINPKrlriNLYLLFSIYGEVIKVAISAK---KQRGQAYITMKNVDEANLAKISLNDELFFENPL 101
                 89*********9933335679********88888886...************************998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1052  (0.0586759); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 799.20
//
Query:       CCD22565.1  [L=643]
Description: hypothetical protein NDAI_0A04080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-43  147.6   0.0    4.8e-43  146.7   0.0    1.4  1  IMS       impB/mucB/samB family
    4.3e-08   32.6   1.8    4.3e-08   32.6   1.8    2.0  2  zf_UBZ    Ubiquitin-Binding Zinc Finger
    1.6e-05   24.9   0.0    5.1e-05   23.4   0.0    1.9  1  IMS_HHH   IMS family HHH motif
     0.0079   16.6   2.5      0.024   15.1   1.3    2.5  2  zf-C2HE   C2HE / C2H2 / C2HC zinc-binding finger


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.7   0.0   1.1e-46   4.8e-43       1     149 [.      31     273 ..      31     274 .. 0.97

  Alignments for each domain:
  == domain 1  score: 146.7 bits;  conditional E-value: 1.1e-46
                 EEETTHHHHHHHHHT.T-.TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHTT-EEE................................ CS
         IMS   1 iDmdaFyasverardpeL.kgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcpdlivv................................ 66 
                 iD++aF+a+ve++r+ +  +++Pvv++q+    +++iavsy+Ar+yG++r+++i+ea k+c +li +                                
  CCD22565.1  31 IDVNAFFAQVEQIRC-DYtRDDPVVCVQW----NSIIAVSYAARKYGISRMDTIHEAMKKCDHLIPIhtavfkkgeswwtyydgygswmkekekqlppd 124
                 8**************.666**********....9******************************99999****************************** PP

                 ..EEE-HHHHHHHHHHHHHHHHH-S..EEEEETTEEEEE-HH..HHHHHH-S............................................... CS
         IMS  67 ..kvdlekyrraskkileilkrfispkvekasiDEayldltg..leelaese............................................... 114
                   kv+l++yrr+s+k+++i+k+++   vekas+DE++ldl++  +e+l+ s+                                               
  CCD22565.1 125 nyKVSLDPYRRESRKLFKIFKEYCY-SVEKASVDEVFLDLGRlcFEDLMFSDdevfqkseamqairntfingeydlqtalpslpdelknleftgmvfnp 222
                 ***********************88.9***************888888888899********************************************* PP

                 ................HHHHHHHHHHHHHHHH---EEEEEESSHHHHHHHH CS
         IMS 115 ................gaalakelrkaikeelgltvsiGiasnkllAKlas 149
                                 +++  +++r+ ike lg+t+s+Gia++k +AKl s
  CCD22565.1 223 anrpllndwddiifalASRETQKMRDVIKESLGYTTSCGIARTKNVAKLGS 273
                 *************************************************87 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.71   3.2e+03       7      15 ..      85      93 ..      84      95 .. 0.85
   2 !   32.6   1.8   9.6e-12   4.3e-08       3      31 ..     559     588 ..     557     589 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.71
      zf_UBZ  7 rCgkeipes 15
                +C++ ip++
  CCD22565.1 85 KCDHLIPIH 93
                8*****987 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 9.6e-12
      zf_UBZ   3 ylCerCgkeipes.elqEHeDwHfAkdLqe 31 
                  +C++C+  +p + e+qEH+D+HfA +L++
  CCD22565.1 559 LQCQKCDLFFPNTkEFQEHLDFHFASKLSD 588
                 58**************************97 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.1e-08   5.1e-05       2      32 .]     287     320 ..     286     320 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.1e-08
     IMS_HHH   2 ddvkefL..wplpitkipGiGgklgek.LeklGi 32 
                 +++++fL  ++++it+++++Ggklg++ +++l++
  CCD22565.1 287 NCLEDFLdnGSFEITSFWTLGGKLGKEiCQVLNL 320
                 799***************************9985 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.95   4.2e+03      22      44 ..     384     406 ..     356     409 .. 0.80
   2 !   15.1   1.3   5.4e-06     0.024      26      62 ..     538     582 ..     515     584 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.95
     zf-C2HE  22 eslseeqskelilktpLkCtrCg 44 
                 + + ++  k+ + ++++++ +C+
  CCD22565.1 384 QLNTRPLVKSMMSNKNMRSSSCK 406
                 45566777889999999999998 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 5.4e-06
     zf-C2HE  26 eeqske..........lilktpLkCtrCganfgnkfpkLKeHLeeef 62 
                 +e ++e            + ++L+C +C+  f+ + ++  eHL+ +f
  CCD22565.1 538 DEMAEEedhstviaaeE-KTEELQCQKCD-LFFPNTKEFQEHLDFHF 582
                 22222234445666634.999********.999***********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1083  (0.0604049); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4632.15
//
Query:       CCD22566.1  [L=165]
Description: hypothetical protein NDAI_0A04090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-21   76.0   1.4    1.9e-21   75.6   0.3    1.7  2  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
    9.8e-17   61.2   1.3    1.9e-16   60.3   0.2    1.8  2  Ribosomal_L11    Ribosomal protein L11, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.3   2.2e-25   1.9e-21       3      65 .]       5      69 ..       3      69 .. 0.94
   2 ?   -1.9   0.0      0.35   3.2e+03      35      48 ..     119     132 ..     113     136 .. 0.72

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 2.2e-25
  Ribosomal_L11_N  3 k...vvkvvklrvpaGkAtpaPplGpaLGplGlnikkfckefnkaTkdkkglripVkitvyqdrsf 65
                     +   +vk+++lr  +G+++++ +l+p++GplGl++kk++++++kaTkd+kg++++V++ + q+r++
       CCD22566.1  5 FdptEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKDFKGIKVTVQLKI-QNRQA 69
                     555599******************************************************.***96 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.35
  Ribosomal_L11_N  35 kkfckefnkaTkdk 48 
                      k f+k  +  Tk+ 
       CCD22566.1 119 KSFGKNLASVTKEI 132
                      67888888888775 PP

>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       0.2   1.8e+03       5      41 ..      10      49 ..       7      61 .. 0.62
   2 !   60.3   0.2   2.1e-20   1.9e-16       2      70 .]      74     143 ..      73     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.2
                   HHHHHHHHHTXSSXXSSTTTSXXEE..EEHHHHHH.HHHH CS
  Ribosomal_L11  5 tsylLkkaagiekgsgkpgketvGt..vslkqvye.IAki 41
                   + yl ++a+g e g++     ++G   +s k+v e IAk+
     CCD22566.1 10 VKYLYLRAVGGEVGASAALAPKIGPlgLSPKKVGEdIAKA 49
                   5677788888888877766666655334444543325555 PP

  == domain 2  score: 60.3 bits;  conditional E-value: 2.1e-20
                    --SHHHHHHHHHTXSSXXSSTTTSXX..EEEEHHHHHHHHHHHGGGHTXS.SHHHHHHHHHHHHCTTTEEE CS
  Ribosomal_L11   2 tPptsylLkkaagiekgsgkpgketv..GtvslkqvyeIAkiKksdlnaalsleaavksilgtArsmGikV 70 
                    +P++s+l++ a++++++++k+ k++   G+++l++++eIAk+++ +++ +++l +++k+ilgtA+s+G+ V
     CCD22566.1  74 VPSASSLVITALKEPPRDRKKDKNIKhsGNLQLDDIIEIAKQMQ-EKSFGKNLASVTKEILGTAQSIGCRV 143
                    7*******************99984477****************.7776779*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1274.58
//
Query:       CCD22567.1  [L=848]
Description: hypothetical protein NDAI_0A04100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.2e-09   35.6   0.0      0.054   14.3   0.0    6.6  7  TPR_14        Tetratricopeptide repeat
      4e-06   27.3   0.2        5.5    7.6   0.0    5.1  5  TPR_19        Tetratricopeptide repeat
    4.3e-06   26.9   0.2       0.52   10.6   0.0    5.2  5  TPR_12        Tetratricopeptide repeat
    2.2e-05   24.3  12.5      0.001   19.1   0.0    5.7  6  TPR_8         Tetratricopeptide repeat
    3.3e-05   23.7   2.9      0.097   12.8   0.1    4.6  4  TPR_2         Tetratricopeptide repeat
     0.0011   18.9   2.6       0.66   10.0   0.1    3.2  3  TPR_3         Tetratricopeptide repeat
     0.0018   17.4   0.8     0.0018   17.4   0.8    5.7  5  NRDE-2        NRDE-2, necessary for RNA interference
     0.0064   16.4   4.5         12    6.2   0.0    5.4  5  TPR_7         Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.012   15.8   3.9        1.2    9.5   0.0    4.2  5  ANAPC3        Anaphase-promoting complex, cyclosome, subunit 
      0.021   14.7   5.0       0.53   10.2   0.0    4.8  5  TPR_10        Tetratricopeptide repeat
      0.032   14.2  26.9       0.24   11.4   0.5    7.2  7  Mad3_BUB1_I   Mad3/BUB1 homology region 1
       0.12   13.0   0.5    1.1e+02    3.7   0.0    4.2  3  TPR_6         Tetratricopeptide repeat
       0.13   12.1   5.0          5    7.1   0.0    4.0  4  TPR_1         Tetratricopeptide repeat
       0.17   12.6   0.0        3.3    8.4   0.0    3.1  4  TPR_16        Tetratricopeptide repeat
       0.26   11.4   3.0         42    4.3   0.1    4.3  4  MIT           MIT (microtubule interacting and transport) dom
        1.9    8.5   6.9         31    4.7   0.0    4.8  5  HAT           HAT (Half-A-TPR) repeat


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       1.1   1.2e+03      28      42 ..      16      30 ..      15      31 .. 0.88
   2 ?    3.1   0.0      0.19   2.1e+02      17      41 ..      48      73 ..      43      75 .. 0.79
   3 ?   -0.6   0.0       3.1   3.5e+03       6      26 ..     228     248 ..     223     255 .. 0.83
   4 ?   -0.9   0.0       3.8   4.2e+03       8      30 ..     310     332 ..     306     343 .. 0.82
   5 !   14.3   0.0   4.8e-05     0.054       3      30 ..     448     475 ..     447     491 .. 0.84
   6 ?    5.7   0.0     0.029        33       7      34 ..     590     618 ..     585     630 .. 0.79
   7 ?   -0.7   0.0       3.4   3.8e+03      20      34 ..     721     735 ..     718     738 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.1
      TPR_14 28 lalaPddaeawllla 42
                l+++P++++aw ++ 
  CCD22567.1 16 LQKDPQNLTAWKRYL 30
                689********9985 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.19
      TPR_14 17 pdeAia.llrralalaPddaeawlll 41
                +++ i+ l++r+l ++ dd e+w+++
  CCD22567.1 48 TEDLIEwLYERLLLQFVDDGELWMEY 73
                555555499999***********998 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 3.1
      TPR_14   6 alaeallalGdpdeAiallrr 26 
                 + ++al++  d+ +Ai+++++
  CCD22567.1 228 QVLQALYNTKDYNTAIEIYKQ 248
                 55789999*********9987 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 3.8
      TPR_14   8 aeallalGdpdeAiallrralal 30 
                 a+ +  + ++d+ ++ll++ l++
  CCD22567.1 310 AKHYIKQAKFDQFEELLQKSLKA 332
                 7789999999**9*****99986 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 4.8e-05
      TPR_14   3 allalaeallalGdpdeAiallrralal 30 
                 ++  +a++++ + ++d A+++++ al+ 
  CCD22567.1 448 LWVSYAQIYWDSKNYDSARQIYESALKV 475
                 7999*********************986 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.029
      TPR_14   7 laeallalGdpdeAiallrralala.Pdd 34 
                 +a++l + G++ ++ ++++ra+a + P+ 
  CCD22567.1 590 YAHFLKNCGRTLDSYQVYERAVAIFtPET 618
                 89*********************864543 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 3.4
      TPR_14  20 AiallrralalaPdd 34 
                 A++l+++a+ + P++
  CCD22567.1 721 ARELYEQAITALPNS 735
                 899*****9999986 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       4.3   4.8e+03      14      31 ..      12      29 ..      11      31 .. 0.81
   2 ?    1.9   0.0      0.29   3.2e+02       5      20 ..     237     252 ..     230     260 .. 0.62
   3 ?    3.5   0.0     0.092     1e+02      30      54 ..     308     332 ..     301     337 .. 0.87
   4 !    7.6   0.0    0.0049       5.5      27      52 ..     448     473 ..     443     475 .. 0.83
   5 !    6.7   0.0    0.0093        10      10      49 ..     721     762 ..     718     770 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.3
      TPR_19 14 leqalqedpknaearllL 31
                +e+ lq+dp+n+ a+ ++
  CCD22567.1 12 FEYELQKDPQNLTAWKRY 29
                67779******9998765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.29
      TPR_19   5 gdyaeAlalleqalqe 20 
                 +dy  A+++++q + e
  CCD22567.1 237 KDYNTAIEIYKQSMRE 252
                 4666666666665443 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.092
      TPR_19  30 lLAeallalgqldeAealLdalpee 54 
                 l A+ ++++  +d+ e+lL++ +++
  CCD22567.1 308 LKAKHYIKQAKFDQFEELLQKSLKA 332
                 66999***************98876 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0049
      TPR_19  27 arllLAeallalgqldeAealLdalp 52 
                 ++  +A++++ ++++d A+++ + ++
  CCD22567.1 448 LWVSYAQIYWDSKNYDSARQIYESAL 473
                 56678999**********99987765 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0093
      TPR_19  10 AlalleqalqedpknaearllL..AeallalgqldeAealLd 49 
                 A +l+eqa+++ p++  + + L  A +  ++++++ A+++++
  CCD22567.1 721 ARELYEQAITALPNSKVIPYILkfAHLEAKSKEVTRAREIME 762
                 99************9999997767***************986 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.11   1.2e+02      13      72 ..     233     250 ..     229     256 .. 0.59
   2 ?    0.5   0.0      0.69   7.7e+02       8      36 ..     308     336 ..     302     342 .. 0.82
   3 !   10.6   0.0   0.00046      0.52      51      73 ..     452     474 ..     446     475 .. 0.60
   4 ?    4.5   0.0     0.037        42       5      34 ..     586     615 ..     582     624 .. 0.86
   5 ?   -1.3   0.0       2.5   2.8e+03      64      74 ..     721     731 ..     719     734 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.11
      TPR_12  13 lrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 l+  +                                          +y  A+e++++++
  CCD22567.1 233 LYNTK------------------------------------------DYNTAIEIYKQSM 250
                 44445..........................................5555555555554 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.69
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrl 36 
                   a  + ++ ++d+ +ell+k+l + +++
  CCD22567.1 308 LKAKHYIKQAKFDQFEELLQKSLKATSSV 336
                 4788899999999999******9998777 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00046
      TPR_12  51 LgrlyralgryeeAlelleeala 73 
                 ++++y+ +++y+ A++++e al+
  CCD22567.1 452 YAQIYWDSKNYDSARQIYESALK 474
                 46666666666666666666664 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.037
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiar 34 
                 +  n+a++l   gr  ++ + +e+a++i++
  CCD22567.1 586 MFINYAHFLKNCGRTLDSYQVYERAVAIFT 615
                 5679***********************985 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 2.5
      TPR_12  64 Alelleealai 74 
                 A+el+e+a+ +
  CCD22567.1 721 ARELYEQAITA 731
                 78888888776 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.011        12       9      27 ..     231     249 ..     227     253 .. 0.89
   2 ?    0.4   0.3      0.92     1e+03       8      30 ..     310     332 ..     307     335 .. 0.84
   3 !   19.1   0.0   9.3e-07     0.001       2      29 ..     447     474 ..     446     476 .. 0.94
   4 ?   -1.2   0.1         3   3.4e+03      19      31 ..     568     580 ..     565     580 .. 0.80
   5 ?    1.3   0.0      0.45     5e+02       5      30 ..     588     613 ..     586     614 .. 0.90
   6 ?   -1.6   0.0       3.9   4.3e+03      20      29 ..     721     730 ..     720     734 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.011
                 HHHHHTT-HHHHHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyyeka 27 
                 +++ +++dy+ A+e y++ 
  CCD22567.1 231 QALYNTKDYNTAIEIYKQS 249
                 7899*************97 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.92
                 HHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekalel 30 
                 ++ y+k+ ++++ +e ++k l++
  CCD22567.1 310 AKHYIKQAKFDQFEELLQKSLKA 332
                 55599999***********9986 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 9.3e-07
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 ++++  ++iy++ ++y++A + ye al+
  CCD22567.1 447 KLWVSYAQIYWDSKNYDSARQIYESALK 474
                 6899**********************98 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 3
                 HHHHHHHHHHHHH CS
       TPR_8  19 eAkeyyekaleld 31 
                 + +e+ye a++l+
  CCD22567.1 568 KIIETYESAIKLK 580
                 55899*****985 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.45
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekalel 30 
                  n ++ +++ g+   + ++ye+a+ +
  CCD22567.1 588 INYAHFLKNCGRTLDSYQVYERAVAI 613
                 6899*******************865 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 3.9
                 HHHHHHHHHH CS
       TPR_8  20 Akeyyekale 29 
                 A e ye+a++
  CCD22567.1 721 ARELYEQAIT 730
                 7889999987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.023        26       9      29 ..     231     251 ..     231     255 .. 0.88
   2 !   12.8   0.1   8.7e-05     0.097       3      29 ..     448     474 ..     446     475 .. 0.92
   3 ?   -2.4   0.0       6.3   7.1e+03      12      30 ..     595     613 ..     588     614 .. 0.70
   4 ?    2.4   0.0      0.19   2.1e+02      20      33 ..     721     734 ..     719     735 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.023
       TPR_2   9 layyklgdyeeAleafekAle 29 
                 +a+y+ +dy+ A+e ++++ +
  CCD22567.1 231 QALYNTKDYNTAIEIYKQSMR 251
                 589*************99865 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 8.7e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 ++   +++y+ +++y+ A++ +e Al+
  CCD22567.1 448 LWVSYAQIYWDSKNYDSARQIYESALK 474
                 78899********************98 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 6.3
       TPR_2  12 yklgdyeeAleafekAlel 30 
                  + g+  +  + +e+A+++
  CCD22567.1 595 KNCGRTLDSYQVYERAVAI 613
                 5566666777899999986 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.19
       TPR_2  20 AleafekAleldPn 33 
                 A+e++e+A+   Pn
  CCD22567.1 721 ARELYEQAITALPN 734
                 9********99887 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00059      0.66      11      29 ..     233     249 ..     232     250 .. 0.91
   2 !    7.1   0.1    0.0049       5.5       5      27 ..     450     470 ..     448     474 .. 0.88
   3 ?   -1.7   0.0       2.8   3.1e+03      20      30 ..     721     729 ..     718     733 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00059
                 HHHTT-HHHHHHH..HHHH CS
       TPR_3  11 fynkkkyqeArelfsYall 29 
                 +yn k+y++A+e   Y+++
  CCD22567.1 233 LYNTKDYNTAIEI--YKQS 249
                 8************..9886 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0049
                 HHHHHHHHHTT-HHHHHHH..HH CS
       TPR_3   5 ysyAaefynkkkyqeArelfsYa 27 
                  syA  + ++k+y+ Ar+   Y+
  CCD22567.1 450 VSYAQIYWDSKNYDSARQI--YE 470
                 59****************9..65 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.8
                 HHHH..HHHHH CS
       TPR_3  20 ArelfsYalla 30 
                 Arel  Y+++ 
  CCD22567.1 721 AREL--YEQAI 729
                 8999..87875 PP

>> NRDE-2  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.6     0.012        14       6      36 ..      12      42 ..       8      53 .. 0.70
   2 !   17.4   0.8   1.6e-06    0.0018      90     139 ..      55     106 ..      46     111 .. 0.86
   3 ?   -1.1   3.0      0.71     8e+02      86     113 ..     368     418 ..     279     475 .. 0.69
   4 ?    2.6   0.6     0.054        60      42     138 ..     561     655 ..     540     662 .. 0.69
   5 ?    0.6   0.3      0.21   2.4e+02      53     143 ..     724     815 ..     710     833 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.012
      NRDE-2  6 lnraveenPedidaWlelvefQdellsaeee 36
                ++ +++++P++++aW +++++ ++ l+  ++
  CCD22567.1 12 FEYELQKDPQNLTAWKRYLDHWKSQLRDPNN 42
                7789999*************99944433333 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.6e-06
      NRDE-2  90 eWeellkenpnsvkLWreyldfrqsnf..asfsvekvkelyekclrtlsakl 139
                  +e+ll +  ++ +LW+ey+ ++  +f  ++f+++k+  +++kcl+t ++k+
  CCD22567.1  55 LYERLLLQFVDDGELWMEYITWQNDRFmaNKFKYSKMTLIFQKCLDTCQEKT 106
                 568899999999**************944589***************99886 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.71
      NRDE-2  86 klakeWeellk.......................enpnsvkLWreyldfrq 113
                 ++  +Weell+                       +npn ++ W+e++    
  CCD22567.1 368 QTDPKWEELLSshfqiaqdltvnyklkmnnlklrQNPNMISTWNERVALFE 418
                 444455555554444444444444444444444466777777776665544 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.054
      NRDE-2  42 erkalaeiklsilekAleknksnpdserLllel...LklgseiwdseklakeWeellkenpnsvkLWreyldfrqsnfasfsvekvkelyekclrtlsa 137
                 ++k   ++ ++ +e+A++ +     s  + +++   Lk + ++ ds ++ ++  + +++ +++ ++W+ yl+ + +  + +s e+++el+ + lr+l +
  CCD22567.1 561 NEKIWKDKIIETYESAIKLK---ILSPMMFINYahfLKNCGRTLDSYQVYERAVA-IFTPETQNEIWNIYLSEVVE-SSIISKEHIRELFDQSLRHLIQ 654
                 45556677778888888888...45555555541115555555555555555333.346678999******99988.8899*************99876 PP

      NRDE-2 138 k 138
                 +
  CCD22567.1 655 A 655
                 5 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.21
      NRDE-2  53 ilekAleknksn.pdserLllelLklgseiwdseklakeWeellkenpnsvkLWreyldfrqsnfasfsvekvkelyekclrtlsaklegrk 143
                 ++e+A+ + +++      L+ ++L++ s++ + ++   e+ + l    ++++LW+ + +f+++  ++ +++++++l ++  ++++  +e+++
  CCD22567.1 724 LYEQAITALPNSkVIPYILKFAHLEAKSKEVTRAREIMEYGAKLLPPVENTDLWEHWDKFELEYGNKETYKNMLRLKRQLENEMKIDTEEAS 815
                 677777777333122346777788888887777777777777777778999******99999999999999999887777666665555544 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0      0.01        12      14      30 ..     238     252 ..     231     258 .. 0.78
   2 ?    0.1   0.0      0.95   1.1e+03       8      31 ..     312     335 ..     309     338 .. 0.81
   3 ?    5.0   0.0     0.027        30       6      26 ..     453     473 ..     449     485 .. 0.89
   4 ?   -2.1   0.0       4.7   5.3e+03       4      22 ..     596     614 ..     594     615 .. 0.70
   5 ?    0.4   0.0      0.76   8.6e+02      18      30 ..     721     731 ..     720     737 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.01
       TPR_7  14 dyeeAielyeqsLaltk 30 
                 dy +Aie+y+qs+  ++
  CCD22567.1 238 DYNTAIEIYKQSM--RE 252
                 9**********55..44 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.95
       TPR_7   8 lysrlGdyeeAielyeqsLaltkd 31 
                  y ++ ++++ +el+++sL  t++
  CCD22567.1 312 HYIKQAKFDQFEELLQKSLKATSS 335
                 5889999************76665 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.027
       TPR_7   6 arlysrlGdyeeAielyeqsL 26 
                 a++y +  +y+ A ++ye +L
  CCD22567.1 453 AQIYWDSKNYDSARQIYESAL 473
                 89****************955 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 4.7
       TPR_7   4 nLarlysrlGdyeeAiely 22 
                 n +r+  + + ye+A+ ++
  CCD22567.1 596 NCGRTLDSYQVYERAVAIF 614
                 6677777777788888877 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.76
       TPR_7  18 AielyeqsLaltk 30 
                 A elyeq  a+t 
  CCD22567.1 721 ARELYEQ--AITA 731
                 6799***..5543 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       9.5   1.1e+04       8      25 ..     151     171 ..     149     174 .. 0.71
   2 ?    9.5   0.0     0.001       1.2      31      59 ..     231     259 ..     222     270 .. 0.80
   3 ?    0.9   0.1      0.48   5.4e+02      26      52 ..     306     333 ..     283     345 .. 0.67
   4 ?    2.9   0.1      0.11   1.3e+02      29      49 ..     452     472 ..     447     476 .. 0.84
   5 ?   -3.3   0.0       9.8   1.1e+04      72      79 ..     725     732 ..     721     751 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9.5
                 HHHHHHHHH....HHH--HHH CS
      ANAPC3   8 Aiflaerlla...aetesped 25 
                 ++f++e+ l    a+ e+++d
  CCD22567.1 151 IEFIYEKFLPltfADEEDEND 171
                 789****99644566666665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.001
                 HHHHHTT-HHHHHHHHHCTSHHHC-HHHH CS
      ANAPC3  31 lclylngqykrAyellrkaklnskslgcr 59 
                 ++ly++++y++A+e+++++  + k     
  CCD22567.1 231 QALYNTKDYNTAIEIYKQSMRETKGTSTS 259
                 89****************95545444444 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.48
                 HHHHHHHHHHTT-HHHHHHHHHCT.SHH CS
      ANAPC3  26 ayllAlclylngqykrAyellrka.kln 52 
                 + l+A+ + ++ ++++  ell+k+ k  
  CCD22567.1 306 TILKAKHYIKQAKFDQFEELLQKSlKAT 333
                 4456888888888888888888874444 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.11
                 HHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  29 lAlclylngqykrAyellrka 49 
                 +A+ +  +++y++A +++++a
  CCD22567.1 452 YAQIYWDSKNYDSARQIYESA 472
                 899999999999999999887 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 9.8
                 HHHHHHHH CS
      ANAPC3  72 yeeAiaaL 79 
                 ye+Ai+aL
  CCD22567.1 725 YEQAITAL 732
                 77777776 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.27   3.1e+02      11      30 ..     232     251 ..     231     254 .. 0.88
   2 ?    0.0   0.0      0.77   8.6e+02      12      31 ..     313     332 ..     310     337 .. 0.86
   3 ?   10.2   0.0   0.00047      0.53       9      30 ..     453     474 ..     451     475 .. 0.92
   4 ?   -3.2   0.0       7.7   8.6e+03      13      30 ..     595     612 ..     589     613 .. 0.54
   5 ?   -0.7   0.2       1.3   1.5e+03      21      30 ..     721     730 ..     720     731 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.27
      TPR_10  11 alrqrgrydeAealleeala 30 
                 al+++++y+ A ++++++++
  CCD22567.1 232 ALYNTKDYNTAIEIYKQSMR 251
                 7999***********99875 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.77
      TPR_10  12 lrqrgrydeAealleealai 31 
                 + ++ ++d+ e+ll+++l +
  CCD22567.1 313 YIKQAKFDQFEELLQKSLKA 332
                 667889***********975 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00047
      TPR_10   9 analrqrgrydeAealleeala 30 
                 a ++++ ++yd A++++e al 
  CCD22567.1 453 AQIYWDSKNYDSARQIYESALK 474
                 789*****************96 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 7.7
      TPR_10  13 rqrgrydeAealleeala 30 
                  + gr  ++ + +e+a+a
  CCD22567.1 595 KNCGRTLDSYQVYERAVA 612
                 555555555455666666 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.3
      TPR_10  21 Aealleeala 30 
                 A++l+e+a+ 
  CCD22567.1 721 ARELYEQAIT 730
                 99******96 PP

>> Mad3_BUB1_I  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.8     0.032        36       5      56 ..      11      65 ..       7      68 .. 0.64
   2 ?   11.4   0.5   0.00022      0.24      21      57 ..      68     105 ..      61     113 .. 0.90
   3 ?    0.9   0.1      0.37   4.1e+02      45      86 ..     352     393 ..     346     431 .. 0.74
   4 ?    6.9   0.4    0.0053         6      98     123 ..     447     472 ..     402     473 .. 0.93
   5 ?    4.1   0.1     0.039        43      80     124 .]     569     611 ..     541     611 .. 0.72
   6 ?   -2.7   0.0       4.9   5.5e+03      81     121 ..     642     685 ..     626     688 .. 0.66
   7 ?    0.5   0.0      0.51   5.7e+02      79     123 ..     720     764 ..     690     765 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.032
                 HHHHHHHTG....-THHHHHHHHHHHHHH-TT.....-T.TT-HHH.HHHHHHHHTTT CS
  Mad3_BUB1_I  5 efeeeleeaeegdDpLelwlryikwieesypq.....sskesglle.llerclkkfkd 56
                 +fe el++ +     L++w ry++  ++++       s+++++l+e l+er+l +f d
   CCD22567.1 11 AFEYELQK-D--PQNLTAWKRYLDHWKSQLRDpnnknSKRTEDLIEwLYERLLLQFVD 65
                 57777777.4..478********99999888775433222233333255666666666 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00022
                  HHHHHHHHHHHHH-TT.-T.TT-HHHHHHHHHHHTTTS CS
  Mad3_BUB1_I  21 elwlryikwieesypq.sskesgllellerclkkfkdd 57 
                  elw++yi+w ++++   + k s++  ++++cl +++++
   CCD22567.1  68 ELWMEYITWQNDRFMAnKFKYSKMTLIFQKCLDTCQEK 105
                  79*************988899************99876 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.37
                  HHHHHHHHHTTTSGGGTT-HHHHHHHHHHHTTSS-HHHHHHH CS
  Mad3_BUB1_I  45 ellerclkkfkdderYknDpRylklwlkyadlveepreifkf 86 
                   +le +++++kd+++ + Dp++ +l     ++ ++ +  +k 
   CCD22567.1 352 AFLETIINELKDNKTLQTDPKWEELLSSHFQIAQDLTVNYKL 393
                  58999***************9988888887777777766665 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0053
                  HHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Mad3_BUB1_I  98 lfYeewAellekkgrfkeAeevyelG 123
                  +++ ++A+++ ++++++ A+++ye +
   CCD22567.1 447 KLWVSYAQIYWDSKNYDSARQIYESA 472
                  6899*******************987 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.039
                  HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH. CS
  Mad3_BUB1_I  80 preifkflaskkiGtklalfYeewAellekkgrfkeAeevyelGi 124
                    e+++  ++ ki +   ++++++A++l+++gr+ ++ +vye+++
   CCD22567.1 569 IIETYESAIKLKILS--PMMFINYAHFLKNCGRTLDSYQVYERAV 611
                  556666666666654..5799********************9985 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 4.9
                  HHHHHHHHHHTT..STTBHHHHHHHHHH.HHHTT-HHHHHHHHH CS
  Mad3_BUB1_I  81 reifkflaskki..GtklalfYeewAel.lekkgrfkeAeevye 121
                  re+f++ +++ i  G  + ++++ ++++  ek+g +k++ +++ 
   CCD22567.1 642 RELFDQSLRHLIqaGVDCKALFILYSKYeAEKNGLIKKSVDILL 685
                  55555555554433788889999999873456666777777665 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 0.51
                  -HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH CS
  Mad3_BUB1_I  79 epreifkflaskkiGtklalfYeewAellekkgrfkeAeevyelG 123
                   +re++++ +     +k+  +  ++A+l  k++++++A+e++e G
   CCD22567.1 720 VARELYEQAITALPNSKVIPYILKFAHLEAKSKEVTRAREIMEYG 764
                  455555555555555666677778999999999999999998877 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.31   3.4e+02       9      25 ..     232     248 ..     231     251 .. 0.89
   2 ?    3.7   0.0       0.1   1.1e+02       7      28 ..     453     474 ..     450     478 .. 0.84
   3 ?    1.4   0.0      0.55   6.1e+02      19      33 .]     721     735 ..     718     735 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealer 25 
                 ++++++d+ +A+e++++
  CCD22567.1 232 ALYNTKDYNTAIEIYKQ 248
                 788989*********86 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.1
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerlik 28 
                 a+ y   +++d A++++e+ +k
  CCD22567.1 453 AQIYWDSKNYDSARQIYESALK 474
                 67788767**********9886 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.55
                 HHHHHHHHHHH-TT- CS
       TPR_6  19 AlealerlikeYPdS 33 
                 A+e++e+ i+  P+S
  CCD22567.1 721 ARELYEQAITALPNS 735
                 99********99998 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1      0.04        44      10      26 ..     232     248 ..     231     251 .. 0.87
   2 ?    7.1   0.0    0.0045         5       8      29 ..     453     474 ..     448     475 .. 0.94
   3 ?   -2.7   0.0       5.4   6.1e+03      21      30 ..     570     579 ..     570     580 .. 0.84
   4 ?   -0.1   0.0      0.85   9.5e+02      20      33 ..     721     734 ..     721     735 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.04
                 HHHHTT-HHHHHHHHHH CS
       TPR_1  10 ayfklgkydeAleyyek 26 
                 a+++ ++y+ A+e y++
  CCD22567.1 232 ALYNTKDYNTAIEIYKQ 248
                 789999******99998 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0045
                 HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekALe 29 
                 +++y   ++yd A + ye AL+
  CCD22567.1 453 AQIYWDSKNYDSARQIYESALK 474
                 689******************8 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.4
                 HHHHHHHHHH CS
       TPR_1  21 leyyekALel 30 
                 +e ye A++l
  CCD22567.1 570 IETYESAIKL 579
                 7889999998 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.85
                 HHHHHHHHHHHSTT CS
       TPR_1  20 AleyyekALelnPn 33 
                 A e ye+A++  Pn
  CCD22567.1 721 ARELYEQAITALPN 734
                 77899999987776 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       9.2     1e+04       6      22 ..     232     248 ..     230     255 .. 0.71
   2 ?   -1.6   0.0       4.1   4.6e+03       3      27 ..     309     333 ..     307     345 .. 0.80
   3 ?    8.4   0.0     0.003       3.3       4      26 ..     453     475 ..     449     476 .. 0.87
   4 ?   -2.2   0.0       6.4   7.2e+03      16      64 ..     721     732 ..     719     735 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 9.2
      TPR_16   6 aalragdyddAaaalea 22 
                 a+++ +dy  A++ +++
  CCD22567.1 232 ALYNTKDYNTAIEIYKQ 248
                 67777777777777655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.1
      TPR_16   3 laraalragdyddAaaaleaalkrd 27 
                 +a+ ++++ ++d+ +++l+  lk+ 
  CCD22567.1 309 KAKHYIKQAKFDQFEELLQKSLKAT 333
                 689999******9999999999998 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.003
      TPR_16   4 araalragdyddAaaaleaalkr 26 
                 a++++++++yd A+  +e alk 
  CCD22567.1 453 AQIYWDSKNYDSARQIYESALKV 475
                 78899999999999999999985 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 6.4
      TPR_16  16 AaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 A++++e+a                                     ++a 
  CCD22567.1 721 ARELYEQA-------------------------------------ITAL 732
                 44555554.....................................4444 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.037        42      16      31 ..     235     250 ..     224     253 .. 0.84
   2 ?    3.2   0.1     0.085        95      17      32 ..     459     474 ..     452     480 .. 0.92
   3 ?   -3.4   0.0       9.8   1.1e+04      24      36 ..     604     616 ..     602     621 .. 0.80
   4 ?   -0.1   0.0      0.88   9.8e+02      21      34 ..     719     732 ..     711     734 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.037
         MIT  16 nagnyeeAlelYkeal 31 
                 n ++y +A+e Yk+++
  CCD22567.1 235 NTKDYNTAIEIYKQSM 250
                 679**********997 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.085
         MIT  17 agnyeeAlelYkeale 32 
                 ++ny+ A + Y++al+
  CCD22567.1 459 SKNYDSARQIYESALK 474
                 69************97 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 9.8
         MIT  24 lelYkealelLlq 36 
                 ++ Y+ a+ ++++
  CCD22567.1 604 YQVYERAVAIFTP 616
                 8899999999876 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.88
         MIT  21 eeAlelYkealelL 34 
                 + A elY++a+  L
  CCD22567.1 719 SVARELYEQAITAL 732
                 5699******9876 PP

>> HAT  HAT (Half-A-TPR) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       5.5   6.2e+03      24      30 ..     314     320 ..     311     324 .. 0.55
   2 ?    1.7   0.0      0.22   2.5e+02       2      12 ..     461     471 ..     460     479 .. 0.79
   3 ?    1.7   0.1      0.23   2.6e+02       8      22 ..     605     620 ..     604     623 .. 0.89
   4 ?   -2.2   0.0       3.7   4.2e+03       6      12 ..     721     727 ..     718     736 .. 0.81
   5 ?    4.7   0.0     0.027        31       1      30 [.     752     784 ..     752     786 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.5
                 HHHHHHH CS
         HAT  24 ikyArFE 30 
                 ik A+F 
  CCD22567.1 314 IKQAKFD 320
                 5656653 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.22
                 -HHHHHHHHHH CS
         HAT   2 EidRAReiYeR 12 
                   d AR+iYe 
  CCD22567.1 461 NYDSARQIYES 471
                 5699*****96 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.23
                 HHHHHHHHHS.--HHH CS
         HAT   8 eiYeRFvvVH.peVkN 22 
                 ++YeR v +  pe +N
  CCD22567.1 605 QVYERAVAIFtPETQN 620
                 59********9**999 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.7
                 HHHHHHH CS
         HAT   6 AReiYeR 12 
                 ARe Ye 
  CCD22567.1 721 ARELYEQ 727
                 9****96 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.027
                 --HHHHHHHHHHHHHHS--HHH...HHHHHHHH CS
         HAT   1 kEidRAReiYeRFvvVHpeVkN...WikyArFE 30 
                 kE+ RARei e      p V+N   W  + +FE
  CCD22567.1 752 KEVTRAREIMEYGAKLLPPVENtdlWEHWDKFE 784
                 89*******998888888888877788888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (848 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1150  (0.0641419); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 5532.37
//
Query:       CCD22568.1  [L=269]
Description: hypothetical protein NDAI_0A04110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-70  235.5   3.5    4.4e-70  235.5   3.5    1.4  2  ATP-synt_D     ATP synthase subunit D
  ------ inclusion threshold ------
       0.18   11.0  10.3       0.52    9.5   7.6    2.1  2  ISG65-75       Invariant surface glycoprotein
        1.8    9.1   8.5       0.54   10.8   5.1    1.9  2  Ribosomal_L6e  Ribosomal protein L6e


Domain annotation for each model (and alignments):
>> ATP-synt_D  ATP synthase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.5   3.5   7.4e-74   4.4e-70       2     196 .]      15     208 ..      14     208 .. 0.96
   2 ?   -3.4   0.3       1.2   7.1e+03     142     147 ..     221     226 ..     210     243 .. 0.53

  Alignments for each domain:
  == domain 1  score: 235.5 bits;  conditional E-value: 7.4e-74
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTST.TSTSHHHHHHHSSS.SS-..TSS-SEEEEEEBTTSEEEEEE CS
  ATP-synt_D   2 LirlkkrlklaqrghslLkkKrdaLilefreilkelkelreeleeelkeayfslaea.faaggeediesavlesvklakvvkvelktenvaGVkvpvfe 99 
                 L  +k++lk+a++g+slLk+K++aL+++fr+i+k++++++++++++++ a+fslae+ +a+g  e+i ++v+esv  a+  kv++++env GV++p+fe
  CCD22568.1  15 LGVMKTKLKGANQGYSLLKRKSEALTKRFRDITKRIDDAKQKMGRVMQTAAFSLAEVsYATG--ENIGYQVQESVLNAR-FKVRARQENVSGVYLPQFE 110
                 6789*****************************************************77777..67*********9888.******************8 PP

                 E-...S.SSTSSSSSSSSTCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_D 100 leee.ksdstelygllrtgaqldeavealrellellvelasletslelLdeeikktnrRvNaLekvvIPrleetikyIkseLdEqereeffrlkkvkk 196
                    + + ++++l+gl+r+g+q+++a+e +++++e+lvelasl+t++++Lde+ik+tnrRvNa+e+v+IPr+e+ti+yI+seLdE +reef+rlkkv++
  CCD22568.1 111 SFVDpEINDFKLTGLGRGGQQVQRAKEIYSKAVETLVELASLQTAFIILDEVIKVTNRRVNAIEHVIIPRTENTIAYINSELDELDREEFYRLKKVQE 208
                 877788899***************************************************************************************96 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.2
                 HHHHHH CS
  ATP-synt_D 142 tslelL 147
                 +++++L
  CCD22568.1 221 MKIKRL 226
                 233333 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.018     1e+02      94     144 ..      32      82 ..       8      91 .. 0.73
   2 ?    9.5   7.6   8.7e-05      0.52      50     127 ..     172     249 ..     159     258 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.018
    ISG65-75  94 tesdaeklkkaceeAkaknkkarekakkalekaekaskkakeaakkAlGee 144
                  + ++e l+k +++  + +++a++k   ++++a+ +  ++  a+ + +G +
  CCD22568.1  32 LKRKSEALTKRFRDITKRIDDAKQKMGRVMQTAAFSLAEVSYATGENIGYQ 82 
                 344557788888888888888888888888888888888888888777764 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 8.7e-05
    ISG65-75  50 etadyllketkdklayienakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkarekakkalekae 127
                 + +  ++ +t++++ayi+++++++d++     + ++e+k+k+t+  +++ k+k+++ee kakn++ +e+ +++  k e
  CCD22568.1 172 AIEHVIIPRTENTIAYINSELDELDREEFYRLKKVQEKKQKETARLDEEMKIKRLAEEEKAKNENLNEEGNEQEVKNE 249
                 555667889****************98766556666779999999*************99999999998888876655 PP

>> Ribosomal_L6e  Ribosomal protein L6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.68   4.1e+03      79      79 ..      53      53 ..      16      99 .. 0.57
   2 ?   10.8   5.1   9.1e-05      0.54       6      78 ..     167     239 ..     162     257 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.68
  Ribosomal_L6e 79 a 79
                   a
     CCD22568.1 53 A 53
                   1 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 9.1e-05
  Ribosomal_L6e   6 LrRvnq.ryVIatstkvdlsgvdekipeklndeyFkkekkkkkkkkkeeelfeekkekkelseerkadqkavDk 78 
                     rRvn+ ++VI   t+  +  ++++++e l+ e F + kk ++kk+ke++ ++e+ + k+l ee ka+ +++++
     CCD22568.1 167 NRRVNAiEHVIIPRTENTIAYINSELDE-LDREEFYRLKKVQEKKQKETARLDEEMKIKRLAEEEKAKNENLNE 239
                    599998579*************999999.777777777777776677878888888889999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2023  (0.112834); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1973.26
//
Query:       CCD22569.1  [L=384]
Description: hypothetical protein NDAI_0A04120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-26   93.1   0.0      2e-25   89.7   0.0    2.0  2  Peptidase_M28  Peptidase family M28
    0.00058   19.6   0.0      0.001   18.8   0.0    1.5  1  Peptidase_M20  Peptidase family M20/M25/M40


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.028   2.5e+02     145     166 ..      38      59 ..      19      74 .. 0.78
   2 !   89.7   0.0   2.2e-29     2e-25       2     194 ..     165     368 ..     164     372 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.028
                    TT-STTHHHHTTT--EEEECTS CS
  Peptidase_M28 145 rgrsDhspflkagvpvldlaet 166
                      +sD +++l++g++ +d+ + 
     CCD22569.1  38 VKESDKWSLLRRGIKFIDITKY 59 
                    457***************9332 PP

  == domain 2  score: 89.7 bits;  conditional E-value: 2.2e-29
                    EEEEESTTCE.SEEEEEEEE--B-TTT.....TCCT---TTTTHHHHHHHHHHHHHCHH....GGCCSSEEEEEEEESSCSGSSHHHHHHHH.HHC CS
  Peptidase_M28   2 viatlegkat.devlllgAHyDsvgvg.....rgpifvGAdDnAsgvaalLelarvlaa....sgsrpkrgvrflffdaEEagllGSkafak.akp 86 
                    +i+++ g++t +  +++g+H Ds+         +p   GAdDn+sg+++ Le +r+ ++    +g+ p +++ f f++aEE gllGS   ++    
     CCD22569.1 165 IIVRIHGSETpESIVVMGSHQDSINLLlpsilPAP---GADDNGSGTVTNLEALRLYVEhylsEGNAPLNTIEFHFYSAEEGGLLGSLDVFTqYAA 257
                    7999*9999956699**********9899999999...*****************9999999878789***********************75445 PP

                    CCTTEEEEEEECS-SSSS--EEE...HHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STTHHHHTTT--EEEE...CTSSS-TTTTSTT CS
  Peptidase_M28  87 elkkiaavlnlDmvgsggkellf...esgdkssselekelkalakpvgraaaedpfdersgrgrsDhspflkagvpvldl...aetgfpevyHtpr 176
                      kk++a+l+ Dm+g   +  +    +++d + ++l++ +k  ++ +  +    + + ++g+ +sDh + +k+g+p+  +   ++++ ++++H++ 
     CCD22569.1 258 LEKKVVAMLQQDMTGYVMDPEDEhvgVITDYTTPGLTDFIKLIIDSYLAI---PYVETTCGYACSDHGSATKNGFPASFViegEFKKTNKYIHSTM 350
                    99************9876666655679******************99887...7889999******************99776666667777**** PP

                    SSGGGB-HHHHHHHHHHH CS
  Peptidase_M28 177 Dtldnidkdtlariaelv 194
                    Dtld+++ + +a++ ++v
     CCD22569.1 351 DTLDRLSFNHMAEHVKIV 368
                    *******99999988876 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.1e-07     0.001      32      94 ..     198     265 ..     181     372 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.1e-07
                    STTTTTTHHHHHHHHHHH....HHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH..HHHTTTCESEE CS
                    xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
  Peptidase_M20  32 GrGaddmkggvlaaleal....ralkdegikpkgtivllfqpdEEggrgGakalle..gleerekvdav 94 
                    ++Gadd+  g ++ leal    +++  eg  p  ti++ f  +EEgg  G+  ++       ++kv a+
     CCD22569.1 198 APGADDNGSGTVTNLEALrlyvEHYLSEGNAPLNTIEFHFYSAEEGGLLGSLDVFTqyA-ALEKKVVAM 265
                    89****************4444556666888899***********88888866666331.223344443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2735.75
//
Query:       CCD22570.1  [L=356]
Description: hypothetical protein NDAI_0A04130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-56  190.7  23.5    4.7e-56  190.5  23.5    1.0  1  EXS       EXS family


Domain annotation for each model (and alignments):
>> EXS  EXS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.5  23.5   2.6e-60   4.7e-56       1     331 []      18     350 ..      18     350 .. 0.75

  Alignments for each domain:
  == domain 1  score: 190.5 bits;  conditional E-value: 2.6e-60
         EXS   1 lplpyrvlllvvlglllwalnlhvlsklginyalifel....dprsslsyrqlye...........laallllllll.lllllll...saevdale..l 78 
                 +p+p r+ +l++ +++lw   l +ls++++++++i+++    d    ++  ++              ++ ++l l l +++l+++   ++ev+  +   
  CCD22570.1  18 IPPPLRLNILLLSAIWLWFSILNFLSRYQVDVSSIVRIrdphD----MHIAPTHYqlqtnarnfatSLTKIILPLHLiSSILYYIfsqQTEVS-NNnvP 111
                 589***********************************64331....3333332223334444333333444444443555555554433332.22233 PP

         EXS  79 lplllllllllllllplnilyrssrrrflrtllrillapla..pvefadfllaDiltSlakvlgDlaltvclyasswseedrkcgsssvvvplllslPy 175
                 + ll+  l l+ l++ ++++  +    + ++++r++l + +  + +++++ll+D ltS+ak+l D++l+  l+   +se  +       +  +++slP+
  CCD22570.1 112 FNLLIHSLPLVGLIIISTTI-IRHVPIIKYCVKRLILIESKprNLRTTYILLSDSLTSIAKPLIDFTLFTSLL---ISE--PIT----HFDLFIASLPV 200
                 34444444444444443333.3456677778888887554422777************************999...666..322....35679****** PP

         EXS 176 liRfrQclreyrdtkkrphllNalKYatafpvivlsalqrlsksdesestlrvlwllaalvnslysfiWDvtmDWgLlkllksknwflRdellypkkwv 274
                 liR++Qclrey+  ++++ l+Na+KY++++p+++++++ r++ s+      +++ l++ l+ns ysf+WDv mDW L +  +   ++ R+++++p+ +v
  CCD22570.1 201 LIRIFQCLREYYIAGNKSMLANAMKYCCNLPILICTWYSRVHDSK---MIKKNYELTFLLINSSYSFFWDVRMDWLLDNIING--KLRRSKIVMPE-FV 293
                 ****************************************99999...44477789999*******************66665..45556676666.9* PP

         EXS 275 YylaivldlvlRftWslklsshlhsiqeselgvfl...lellEvlRRwvWvffRvEnEhv 331
                 Y++ai++d+++R++W++  +      ++  +++f+   l++lEvlRR++Wv+f++E+E+v
  CCD22570.1 294 YQVAIFIDFIIRYWWVWIRLYG---GNSGYIFIFFdgeLQYLEVLRRAIWVVFKLESEYV 350
                 ****************977744...3334477888899********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2586.74
//
Query:       CCD22571.1  [L=256]
Description: hypothetical protein NDAI_0A04140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-40  136.9  20.4    5.8e-40  136.9  20.4    2.6  2  Nop25     Nucleolar protein 12 (25kDa)
  ------ inclusion threshold ------
      0.035   13.9   0.1       0.36   10.7   0.0    2.2  2  KNTase_C  KNTase C-terminal domain


Domain annotation for each model (and alignments):
>> Nop25  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9  20.4   6.5e-44   5.8e-40       2     137 .]      19     172 ..      18     172 .. 0.83
   2 ?   -6.1  12.8         2   1.8e+04      89     110 ..     220     239 ..     180     256 .] 0.40

  Alignments for each domain:
  == domain 1  score: 136.9 bits;  conditional E-value: 6.5e-44
       Nop25   2 kkakkkkveevtFDkdsRkeYLTGFhKRKlqRqkkAqeeakeqereerieeRkklreerkkeleeqleevketlke...seeeeeeeee.eeeeeeeee 96 
                 k++kk++++evtFDkdsR +YLTGFhKRKl+RqkkA+e++ eq+r++rieeRkk+r+erk+++eeq++++ketl+    +e++ ++++  e++e++++ 
  CCD22571.1  19 KQSKKFGADEVTFDKDSRLDYLTGFHKRKLERQKKAKEFNIEQDRLARIEERKKIRDERKEQMEEQMKKFKETLEIqkeIEDDINNAKIgENSEKKKDI 117
                 899***********************************************************************9954422333333220333337788 PP

       Nop25  97 eeeeeeewegfedeeeeeeeddeeeyidee...............kettVtvesld 137
                 +++++e+w+gf+d++ +++++d+ +++d++               ++ttV+vesl+
  CCD22571.1 118 DSDSDESWNGFSDHN-DDDDADNTKSEDSSsvkpilkgqitavysDDTTVEVESLE 172
                 9999********974.44444444444555799********************985 PP

  == domain 2  score: -6.1 bits;  conditional E-value: 2
       Nop25  89 eeeeeeeeeeeeeeewegfede 110
                 ++++++  ++++++++  ++++
  CCD22571.1 220 KDKSQK--KKKQKKKFRYLTKN 239
                 222221..22222222222221 PP

>> KNTase_C  KNTase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.039   3.5e+02     107     130 ..     113     136 ..      78     138 .. 0.77
   2 ?   10.7   0.0     4e-05      0.36      30      62 ..     175     207 ..     150     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.039
    KNTase_C 107 dakkiveacealwkglekwaaehg 130
                 + k i + ++  w+g+ ++ ++++
  CCD22571.1 113 KKKDIDSDSDESWNGFSDHNDDDD 136
                 456689999999****99998876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 4e-05
    KNTase_C  30 elyEfigKlrnvrkegdetalatlalqlAqyaa 62 
                 + +E+i+Kl+nv+ e  e++l++ + ++ +ya 
  CCD22571.1 175 DNFEYIAKLNNVKLEQSEKVLKQSISRATKYAK 207
                 779********************9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3623  (0.202075); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 1801.08
//
Query:       CCD22572.1  [L=393]
Description: hypothetical protein NDAI_0A04150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-39  134.3   6.4      6e-39  134.0   6.4    1.1  1  DER1      Der1-like family


Domain annotation for each model (and alignments):
>> DER1  Der1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.0   6.4   3.4e-43     6e-39       1     184 [.      27     235 ..      27     240 .. 0.93

  Alignments for each domain:
  == domain 1  score: 134.0 bits;  conditional E-value: 3.4e-43
        DER1   1 iPavTRllltatvvltllgrlelispaklvlsyelvvkkvQiwRlltsllyfsstgfsflinlyfiyqysskLEegsfrgr.....sadyvylllflav 94 
                 +P+vTR++l++  v+t ++ l+li   +l++s++ ++k++Q+wR+lts l+++    + l++ly +y +s  LE++ f  +     s dy+y++ +++v
  CCD22572.1  27 VPPVTRTVLLLFSVVTSIVALQLIPTGYLIYSWSDTFKHFQLWRILTSSLILPLQITNLLMELYNFYSRSIDLEQNRFLISsstnpSIDYAYYIAVSMV 125
                 7*****************************************************************************9888888899*********** PP

        DER1  95 litllgl...ladl.vvLgqalilaivYvwskknkdvqvsFfgvlrvkakylPlvllafsfllge.svvvsligilvghiyyfle.............. 174
                  i + ++   + ++ +vL ++++++i+ +w+++n++ ++ ++g+++v +kylPl++l+ sf++ +  + v l g+ +++++ +l+              
  CCD22572.1 126 SIAISSSlvvGRQYsFVLSSPFTTCITCTWAIDNANKKILYYGIIPVYGKYLPLIQLVTSFIFDQnGFYVCLTGLSTSYLFACLDtgswgpiwgwlrgk 224
                 ***99997754467799***********************************************98899***************988888888888888 PP

        DER1 175 .dkypiklnGk 184
                  ++y+i + Gk
  CCD22572.1 225 qPNYGIAPAGK 235
                 77788877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1449  (0.0808188); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2754.58
//
Query:       CCD22573.1  [L=260]
Description: hypothetical protein NDAI_0A04160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-29  102.3   0.2    2.3e-29  101.6   0.2    1.4  1  ICMT      Isoprenylcysteine carboxyl methyltransferase (ICMT)
    5.9e-14   52.4   5.3    3.2e-13   50.0   0.5    2.8  3  PEMT      Phospholipid methyltransferase
    9.9e-05   22.0   0.3    0.00014   21.5   0.3    1.2  1  DUF1295   Protein of unknown function (DUF1295)
  ------ inclusion threshold ------
      0.028   13.9   0.0      0.063   12.8   0.0    1.6  1  NnrU      NnrU protein
        6.5    7.4  10.4         42    4.8  10.1    2.6  2  Rab5ip    Rab5-interacting protein (Rab5ip)


Domain annotation for each model (and alignments):
>> ICMT  Isoprenylcysteine carboxyl methyltransferase (ICMT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.2   6.5e-33   2.3e-29       3      94 .]     147     239 ..     143     239 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 6.5e-33
        ICMT   3 llvllaqalrlvvmatlGeiwttrvai..lpdhklvksglykylrHPnYllfvilelatllLlcnakltalvllalvalllf.vRikeEekaLae 94 
                  lv+++q +r++ m+t+G+++++ + +  ++dh+lv++g+y+++rHP+Yl+f++++++t++Ll+n+  +++ ++++v++ +f +Rik Eek+L+e
  CCD22573.1 147 FLVIMGQSIRFISMKTAGKSFSHLLKTekEDDHTLVTDGIYSVFRHPSYLGFFWWAVGTQILLLNP--ISTCIFVYVLWNFFsKRIKIEEKYLIE 239
                 469************************9999***********************************..777777788****************85 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.28     1e+03      50      81 ..      35      67 ..      19      89 .. 0.62
   2 ?    3.1   0.1     0.033   1.2e+02      10      41 ..     100     131 ..      99     142 .. 0.82
   3 !   50.0   0.5   8.9e-17   3.2e-13       4     106 .]     143     245 ..     140     245 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.28
        PEMT 50 ylnnP.eyvgstlgflGlaLitgsaaglllall 81
                +++nP   v+ t  flG+ +  +  +  +l++ 
  CCD22573.1 35 ITRNPlHEVTLTSLFLGTLMGLSIGLLPVLTFK 67
                677774457777778887655544443333333 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.033
        PEMT  10 ialglllvlssiealgefgtfygdfFlelmdk 41 
                 ++l++ ++++  +alg+f+  +  +F+++ ++
  CCD22573.1 100 FILKNGISYTLAHALGVFECLIESYFFQDLKS 131
                 67889999999***************986653 PP

  == domain 3  score: 50.0 bits;  conditional E-value: 8.9e-17
        PEMT   4 ilGlllialglllvlssiealgefgtfygdfFlelmd..klvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylialkfvEephlak 100
                 i+Gl l+++g+ +++ s+++ g+    + +   e  d  +lvt+GiY+++++P y+g +   +G+ ++  ++ ++ + + vl++++  ++ +Ee++l +
  CCD22573.1 143 IIGLFLVIMGQSIRFISMKTAGKSFSHLLKTEKE--DdhTLVTDGIYSVFRHPSYLGFFWWAVGTQILLLNPISTCIFVYVLWNFFSKRIKIEEKYLIE 239
                 67**********************9999999444..445**********************************988888888888888889******** PP

        PEMT 101 iYgkre 106
                  +g+++
  CCD22573.1 240 FFGEDY 245
                 ***975 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.3   3.9e-08   0.00014     113     234 ..     133     251 ..     106     252 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.9e-08
     DUF1295 113 eeqal.kaldviglalwlvgivlealaDqQ.lsaf....kkdpankgkvldsGLwrysRHPNYfgealiWwglflialealeglealaiagpllltlll 205
                 +++++ k l++igl l+++g  +  ++ +   ++f    k++ +    ++++G++++ RHP Y+g  ++Ww++    ++    l+   i   +++++l 
  CCD22573.1 133 SNKTFqKYLSIIGLFLVIMGQSIRFISMKTaGKSFshllKTEKEDDHTLVTDGIYSVFRHPSYLG--FFWWAVG---TQ---ILLLNPISTCIFVYVLW 223
                 444554788999999999986666555433033445566999999999****************9..7888753...22...23335677778888888 PP

     DUF1295 206 vfvsg.ipllEkkalkkykdkeeyreYqkk 234
                  f+s  i++ Ek   + ++  e+y +Y+k+
  CCD22573.1 224 NFFSKrIKIEEKYLIEFFG--EDYVNYKKN 251
                 8887537777777777777..999999986 PP

>> NnrU  NnrU protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.7e-05     0.063      94     125 ..     167     204 ..     108     224 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
        NnrU  94 lsvglka......dlaetgivritrHPmllgvaiWAla 125
                 +s  lk       +l + gi+++ rHP  lg+  WA++
  CCD22573.1 167 FSHLLKTekeddhTLVTDGIYSVFRHPSYLGFFWWAVG 204
                 333333334466678899******************85 PP

>> Rab5ip  Rab5-interacting protein (Rab5ip)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  10.1     0.012        42       8      57 ..      49      98 ..      43     226 .. 0.88
   2 ?   -0.6   0.2      0.58   2.1e+03      38      47 ..     214     223 ..     189     255 .. 0.56

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.012
      Rab5ip  8 ltalllGvvaGilgLeslsGflfylllsllvsllfyalkvkgkskkyfrg 57
                +++ l+G+++G+l++  +  f +y+++++l+ +l +++++k ++ k   +
  CCD22573.1 49 FLGTLMGLSIGLLPVLTFKSFNIYIFSFALFHFLEFYVTAKYNPGKVHSD 98
                56889*****************************9988888777664444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.58
      Rab5ip  38 vsllfyalkv 47 
                  +++f++++ 
  CCD22573.1 214 STCIFVYVLW 223
                 2223333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1903.54
//
Query:       CCD22574.1  [L=665]
Description: hypothetical protein NDAI_0A04170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.6e-36  124.3   0.3    1.2e-35  123.0   0.3    1.7  1  PINIT         PINIT domain
    3.6e-20   71.5   8.4    7.1e-20   70.5   8.4    1.5  1  zf-MIZ        MIZ/SP-RING zinc finger
    6.2e-05   22.7   0.7    0.00016   21.5   0.7    1.7  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
    0.00033   20.6   2.9    0.00065   19.7   2.9    1.5  1  zf-RING_UBOX  RING-type zinc-finger
  ------ inclusion threshold ------
        1.3    9.5   4.6        2.3    8.6   4.6    1.5  1  zf-RING_2     Ring finger domain
        2.5    8.0   4.4        5.5    6.9   4.4    1.6  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> PINIT  PINIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.3     4e-39   1.2e-35       2     146 .]     132     268 ..     131     268 .. 0.92

  Alignments for each domain:
  == domain 1  score: 123.0 bits;  conditional E-value: 4e-39
       PINIT   2 lrfkkspFYeileel.skpteleasskkrnsvsfsfklseeqveklakssrkekrvqyqlrlfcasedsksesseeqdiefPpqleikvNgkevkanlr 99 
                 l+fk+spF+++++ + ++ + ++ +  +r+ +  +f+ls++++e+l+k+ +k     y+l+lfca+ + + +s ++  iefP+++e+++N++ v++n++
  CCD22574.1 132 LHFKESPFFKLKRLIpQTAQPVK-KIGGRGIALAKFRLSPHDYELLSKT-NK-----YKLYLFCAKVN-ELGSRGNEFIEFPTHCEVRFNNVRVPDNVK 222
                 79*************77777777.7999******************555.77.....*******8875.5556799*********************** PP

       PINIT 100 glknkpGtarPvditkllrlspaetNrieityaltkkkYylvvylVk 146
                 glknkpGt++P+d+t+++r ++ ++N ++++ya t+++Y +++y+V+
  CCD22574.1 223 GLKNKPGTTKPADLTPYIRNQN-QENILQLIYAMTTSEYRIYCYVVE 268
                 *******************997.***********************7 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   8.4   2.4e-23   7.1e-20       1      48 [.     313     360 ..     313     362 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 2.4e-23
                 EESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT- CS
      zf-MIZ   1 vslkCplslsrikiPvrgekCkHlqCfdlesylelnertetWnCPvCs 48 
                 +sl+Cp+s++++++P++++ CkHlqCfd+ ++l+++ + +tW+CP+C 
  CCD22574.1 313 MSLQCPISYTKMNYPAKSIICKHLQCFDALWFLHSQWQVPTWQCPICT 360
                 79*********************************************7 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.7   5.2e-08   0.00016       1      56 [.     304     359 ..     304     360 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.2e-08
                 SXXXXXSSBXXSB-TTTSSB-SSEEEESSS--E..EEHHHHHHHCTTTS-EE-SCCC- CS
      zf-Nse   1 delaieeerislkCPltlqpfeePvtskkCpHv..FEreaIlelikrkktvkCPvagC 56 
                 d+l  ++  +sl+CP++  +++ P +s  C+H   F+    l+   +++t +CP+  C
  CCD22574.1 304 DDLITTSIVMSLQCPISYTKMNYPAKSIICKHLqcFDALWFLHSQWQVPTWQCPI--C 359
                 899999999***********************64488777777778999999999..7 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   2.9   2.2e-07   0.00065       1      39 []     317     357 ..     317     357 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.2e-07
  zf-RING_UBOX   1 CpIClelftdP...lvlpCGHtFCreClw.elskslegafkCP 39 
                   CpI++  ++ P   +   C H  C + lw   s+++ ++ +CP
    CCD22574.1 317 CPISYTKMNYPaksI--ICKHLQCFDALWfLHSQWQVPTWQCP 357
                   ***********7533..4************9***********9 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.6   0.00077       2.3       2      43 ..     316     359 ..     315     360 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00077
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreCl....erwlrssstCPlC 43 
                 +CpI + +++ + + +   C+H  +++ l    ++w  ++ +CP+C
  CCD22574.1 316 QCPISYTKMNYPAKSI-I-CKHLQCFDALwflhSQWQVPTWQCPIC 359
                 7999998886555544.2.*9988888876666666666666**** PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.4    0.0018       5.5       1      40 []     316     359 ..     316     359 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0018
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCi...lrsLeekn.eCPlC 40 
                 +Cpi +  ++ p  ++ C+H  C + +   +  ++    +CP+C
  CCD22574.1 316 QCPISYTKMNYPAKSIICKHLQCFDALwflHSQWQVPTwQCPIC 359
                 7***********************985332557888889****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1232  (0.0687155); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 4710.33
//
Query:       CCD22575.1  [L=214]
Description: hypothetical protein NDAI_0A04180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-51  175.0   0.0    1.4e-51  174.8   0.0    1.0  1  Formyl_trans_N  Formyl transferase


Domain annotation for each model (and alignments):
>> Formyl_trans_N  Formyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.8   0.0   8.1e-56   1.4e-51       2     181 .]       3     204 ..       2     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.8 bits;  conditional E-value: 8.1e-56
                     EEEEEESESSHHHHHHHHHHHHTTSE.CEEEEEEESCTTEHCHHHHHHCCHCCCECHHCC.............SCCCCCCCHHHHHHHHCTT-SE CS
  Formyl_trans_N   2 kivvlisgtgsnlqalldalkkgsle.advvlvvsnkdkaaglekaeaasiptkvfeekk.............leprsqfeeelaeelkelkadl 82 
                     ki vlisg+gsnlqal+da+k ++l+  ++ +v+s+++ka+gle+a++a+ipt++ + ++              ++r qfe++la+ + e ++dl
      CCD22575.1   3 KISVLISGSGSNLQALIDAQKASKLGdSKITSVISSSKKAYGLERANKAGIPTHIQSLYPytkdipkedkiarSNARIQFEDDLAKLVLEDGPDL 97 
                     899*********************999********************************************9888899***************** PP

                     EEEES--S---HHHH.HSSTTSEEEEESSSTTTTBS.S-HHHHHHHTTSSE.....EEEEEEE--SSSSTS-EEEEEEEE--T.T--HHHHHHHH CS
  Formyl_trans_N  83 ivlagymkllpkelv.qavrlkilniHpSLLPrfkG.aaaiqraleaGdke.....tGvtihfvdeelDtGailaqkkveiia.edtkeeleqrv 169
                     iv+ag++++l+++++ +  + +iln+Hp+L+++f+G ++ai++a+ a+++      +G+++h+v ee+D G+++++k++ i++ ++t+ee+e+rv
      CCD22575.1  98 IVCAGWLLILGSTFLnRIGSIPILNLHPALPGAFDGtTHAIEMAWNACQESgkplvAGCMVHYVIEEVDRGEPVIVKELTITPnDETLEEYEARV 192
                     ***************555688***************99************999999***************************99********** PP

                     HHHHHHHHHHHH CS
  Formyl_trans_N 170 adaehkalveal 181
                     ++aeh a+vea+
      CCD22575.1 193 HQAEHVAIVEAT 204
                     *********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1658.09
//
Query:       CCD22576.1  [L=1257]
Description: hypothetical protein NDAI_0A04190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
          0 1046.4  23.1          0 1046.1  23.1    1.0  1  TRAPPC9-Trs120  Transport protein Trs120 or TRAPPC9, TRAPP II


Domain annotation for each model (and alignments):
>> TRAPPC9-Trs120  Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1046.1  23.1         0         0       3    1220 ..       9    1215 ..       7    1221 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1046.1 bits;  conditional E-value: 0
  TRAPPC9-Trs120    3 sfiaParvrvLlvPigkikrsrFlsfverlraenevrLlDvtpdsrpnrnmFsPlafpnGrilydlstsvpdeeh.lfLedFEpfRktfvvig 94  
                       +i+P+r+r+L+vPigk+++s+F+++++r++++ne+rLlD+tp+   ++ +F+P++fpnGr+l+d+++ ++ +e+ +fL+dFEpfRktf+vig
      CCD22576.1    9 TYIDPSRIRTLIVPIGKWRESSFTKAISRIKDFNEIRLLDITPI---DSPLFTPQGFPNGRLLFDINIIAKLDESdMFLYDFEPFRKTFIVIG 98  
                      79******************************************...********************999988888***************** PP

  TRAPPC9-Trs120   95 iadgseekdledleqeleelkekypkalvhnlivfdtpeekaalpeevilvpsseesksttlktimcDitsnlLaeldslaksyqaiptlrSP 187 
                      ++  ++   ++d+ ++le lk+kyp++++hnli+ +++ +++  +++  +v+  + +++++l+t+mcDi++n+L++l+++++sy+++ tlrSP
      CCD22576.1   99 LV--ND---DSDPIENLEILKDKYPTVISHNLIYSSKDLDNT--KTSDANVFYRRINEEISLETVMCDIGKNFLQALNHYYSSYKHV-TLRSP 183 
                      **..55...88***************************4433..3344566666677789***************************.***** PP

  TRAPPC9-Trs120  188 gsitgssvlkktl........qkesrssss......dkaqkRlsmpvasgssstpttfdeisrsvaglgsssasersrqrgkGRqskllGnly 266 
                      g+i+gssvlk++l        +              ++++kRls    s++  t++t+++ +++   ++ s+++++++qr++GRq k+lGn++
      CCD22576.1  184 GAIGGSSVLKTKLtrqvttanSM------MaskssaTSNPKRLS----SFEA-TTNTLKRSASMKLATTLSTSENKAQQRSRGRQLKILGNFQ 265 
                      ***********998877654222......0223457999*****....8888.88899995554445599*********************** PP

  TRAPPC9-Trs120  267 LlAGrypdALkefteaatlakklsDylWlgsALEgilvcllLlaylgvdfqip...ssicqpskdklsslkss..ssesssrrksles..... 349 
                      Ll+Gry dA+ +fte+++l++k++Dy+Wlgs L+g+++c++Ll+yl+++fqip   + ic++     ss++++   +++ss+r+s+       
      CCD22576.1  266 LLSGRYIDAMASFTESIILLHKTRDYIWLGSGLDGLAICFILLSYLQLPFQIPeiiDIICPVPLIDPSSIENNnnLNSTSSPRNSVVInglqs 358 
                      *******************************************************9999**99999998776666555556666666589*** PP

  TRAPPC9-Trs120  350 .....................lpellkellekilslYerslndteesvPqlvysesvlRllkllvavhlrggslndealehiVkgkaseplee 421 
                                           lp l+k l+ek+l++Y++sl++++e++Pq+vys ++l++l++++++h+ g  l+ ++l++i+kg++++++  
      CCD22576.1  359 prgsmafnqrpalnidvekvnLPLLIKTLSEKTLYYYDLSLSHNTEYAPQIVYSTCLLKTLTFMTSCHN-GTILSADILNDIIKGRHNHEN-- 448 
                      *********************************************************************.889************666555.. PP

  TRAPPC9-Trs120  422 keskekprlavlfskseIasllfkafplqlkdlslvdqirIlsglAsvlssLgleRKkAfvlrellvslipgleqarkvgaaevgihpaAgal 514 
                       +s+ k+  + lf+k e++++++++f+lqlkd++l++q++I+s+lA+v++ Lg+ RK++fvlr+l+v+l+ + e+ +    ++          
      CCD22576.1  449 -NSQLKEDFNPLFNKIEVYAFANRLFELQLKDMELESQVEIYSTLAAVYKILGFLRKESFVLRLLMVTLLISSETLS----WH---------- 526 
                      .5778899999***************************************************************998....88.......... PP

  TRAPPC9-Trs120  515 dlgegdqeesirellellleiYgikeaeveriledaslrsfgwlsLqievLrlcinisealpDfegvlkftvllLtryshllpkdeQvrLlen 607 
                              +++r+l+ ++l++Ygi+       +++ +++ +gwl Lq++ ++lc+ ise ++D++++ k+++llL++ys++l++ e+ r+l+n
      CCD22576.1  527 --------QDYRALICNILNLYGIE-------IDQPESAPSGWLFLQKKAIQLCLAISEIISDKAYISKLSILLLRKYSKILTTAEEERMLQN 604 
                      ........9****************.......67777789***************************************************** PP

  TRAPPC9-Trs120  608 iertvaaakklglkelaeYWDpfLvrgvklle.......eseskipiees.kselkkatkeeeksekdpfiynPFkkkkkastkak....... 685 
                      + ++++++  ++      YWD++++rgvk+ +        ++s+ip++++  +e  +++++e ++ ++++++nPFk+ + ++++++       
      CCD22576.1  605 YINPMVTSGVIK-----TYWDEYILRGVKIQSlefdnsgAENSRIPLASAlINE--SRKAKEISKINTQEVFNPFKQLQITAKARNnsnpkte 690 
                      ***********9.....*************666699999888999999995333..345556666889*********99888885568999*9 PP

  TRAPPC9-Trs120  686 ..ekllvadEkaefkvtLqNPfefeveiesieletegvefe.alkes......lvigpkstqkltltg...kptesgelkitgckikvlgcre 766 
                         +l++ ++kaef++ LqNPf+f+v +++iel+ ++++++ ++ ++      +vi+p s+q+++l +   k+t ++ + i++++++++++++
      CCD22576.1  691 tpPELFLIGDKAEFSIELQNPFKFDVPVSNIELNPKTAKYCtLIGDNftndnpYVIKPLSIQTISLILqvkKETFHDVHLIDSLNMSIFNLPP 783 
                      999**************************************6566669999***************999999999****************** PP

  TRAPPC9-Trs120  767 reFpifkkekwkpkkekkikrtglaakekkserrpetkslslkVipeQPelelk.stsltqsavMlLeGekktfsitLeNkS.stavdflsfs 857 
                      +eF+i++ +++++                + e+++++++++l+++peQPel+l  ++++t + +M+L+G++++f++tL+NkS ++++d+l+f 
      CCD22576.1  784 QEFKIVSYKDNSE---------------VNAEEKCTYDQVKLQILPEQPELQLLnTSKMTGNVWMMLDGTSTNFTVTLRNKSlTCNIDYLQF- 860 
                      *******994444...............456789*******************97888**********************************. PP

  TRAPPC9-Trs120  858 fqDstienlqkalkn...kelsaaelYelElql..lkkkalrilnkdeekktikPgeeatfeievlgkkg...lteatiqidYaylgkkssee 942 
                         + ++ ++++lk    k+l+++elY+lE +l  lkk++++ +n   +++t+kP+e ++f+++v+ +++   lt++++ i+Y+   +k++++
      CCD22576.1  861 ---TPVTSIEQSLKPdywKKLRPDELYSLEKKLewLKKNCITTKN---APRTMKPNEVIEFNLNVNVSNApleLTGFDLLIEYG---MKAADQ 944 
                      ...******************************************...********************99999***********...999998 PP

  TRAPPC9-Trs120  943 sekfytrqlsipltvtVnasielvrcdilplsessksasadkqlsell......seeskkekdsdycLlllDlrNsWpnplsvsleveeksed 1029
                      s ++y+++l++p+++t+++sie++ +di+p++e      +d++++ ++      +  ++++ ++dy+Lll+D+rNsW++ +s+++++e    +
      CCD22576.1  945 S-CVYLKKLRLPYKLTIKSSIEVPTMDIIPVNE----LLSDEMERLDWidhlmkQIGDNENRKNDYALLLFDVRNSWIDGMSLEVQFE----E 1028
                      8.*******************************....666666677777777765556677899***********************6....9 PP

  TRAPPC9-Trs120 1030 efeveetiepgktsRlilpikrislkeedl.hkpIPsLnrnrQFVvsaskiseeeeramreaFWyReelLkrlkgtWke.ssskreGeidlR. 1119
                      + ++++ ie ++tsR+i+pik+i+++e+++ ++pIPs++++rQF++s  +++e+ee  mre+FW++e+lL+rlkg+Wk  ++++ +G++d+  
      CCD22576.1 1029 FKSNSYLIEGSHTSRIIVPIKKIDYRENHFaTTPIPSISKGRQFIQS--GLTEQEEIGMRESFWFKEYLLSRLKGSWKLsTDKSITGTVDFGk 1119
                      99*********************************************..9*****************************999*********99 PP

  TRAPPC9-Trs120 1120 sirlt.srmvdalkled..ieievslekeeee...........qtgrskfkvktdefltlkvtitnr.sskpispilrllPslnqpanvaldl 1197
                      +i++  ++mv++ ++++   +i++++ek++ +           qt+++    kt  +  l++ i+++ ss+ +       P++          
      CCD22576.1 1120 FIEKIdAKMVSVACKGKssFDIKMTMEKTNVKigdsteivveiQTNTKDRLNKTPPTEYLHYLIFDHfSSQAL-------PKS---------- 1195
                      999999********99944455555555555588888888888777777888888888888888888777777.......888.......... PP

  TRAPPC9-Trs120 1198 srrllinGvlqqalpvlepgest 1220
                      + +ll+nG l+++++     ++t
      CCD22576.1 1196 NGKLLYNGSLSKPINS---CKDT 1215
                      9************944...3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.49
# Mc/sec: 7783.15
//
Query:       CCD22577.1  [L=1551]
Description: hypothetical protein NDAI_0A04200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-84  282.4  51.2      7e-45  153.0  22.0    2.4  2  ABC2_membrane    ABC-2 type transporter
    1.8e-38  132.1   0.1    1.8e-17   64.2   0.0    3.4  3  ABC_tran         ABC transporter
    8.4e-36  121.8   0.9      5e-31  106.5   0.1    3.4  2  PDR_CDR          CDR ABC transporter
    7.7e-17   61.7   0.4    3.8e-16   59.5   0.0    2.5  1  ABC_trans_N      ABC-transporter N-terminal
    4.1e-07   29.8   1.3    2.7e-05   23.8   0.1    2.9  3  AAA_25           AAA domain
    2.8e-06   27.8   0.1    0.00036   20.9   0.0    2.4  2  AAA_16           AAA ATPase domain
      4e-06   27.4   0.2     0.0078   16.8   0.0    3.4  3  AAA_18           AAA domain
    4.8e-06   25.9  29.1     0.0015   17.8   7.2    2.7  2  ABC2_membrane_3  ABC-2 family transporter protein
    2.4e-05   24.3   0.5    0.00087   19.2   0.0    2.5  2  RsgA_GTPase      RsgA GTPase
     0.0011   18.6   2.6      0.009   15.7   0.1    2.8  2  AAA_29           P-loop containing region of AAA domain
     0.0013   18.2   0.0       0.14   11.6   0.0    3.0  3  SMC_N            RecF/RecN/SMC N terminal domain
     0.0024   18.2   2.2       0.28   11.4   0.3    2.6  2  AAA_28           AAA domain
     0.0024   17.7   0.0       0.44   10.3   0.0    2.7  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0025   18.0   0.0       0.18   12.0   0.0    2.5  2  AAA_33           AAA domain
     0.0074   16.6   3.1       0.57   10.5   0.3    3.3  3  AAA_22           AAA domain
     0.0084   15.8   1.0        3.9    7.1   0.5    2.6  2  AAA_30           AAA domain
      0.009   15.9   1.9        3.4    7.6   0.2    2.8  2  NACHT            NACHT domain
  ------ inclusion threshold ------
      0.014   14.4   0.0       0.42    9.5   0.0    2.4  2  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
      0.016   14.8   2.1        2.1    7.9   0.2    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.069   13.6   0.3      0.069   13.6   0.3    3.0  3  AAA_23           AAA domain
      0.073   12.4   0.1        1.2    8.3   0.0    2.4  2  DnaB_C           DnaB-like helicase C terminal domain
       0.12   12.7   0.1         25    5.3   0.0    3.0  2  AAA              ATPase family associated with various cellul
       0.14   11.8   0.3        7.1    6.3   0.0    2.4  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.16   11.9   0.0         24    4.9   0.0    2.5  2  AAA_5            AAA domain (dynein-related subfamily)
       0.26   11.1   2.4         15    5.4   0.0    2.9  3  dNK              Deoxynucleoside kinase


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0  21.2   3.2e-42   2.3e-39       2     210 .]     501     712 ..     500     712 .. 0.96
   2 !  153.0  22.0   9.8e-48     7e-45       1     207 [.    1190    1405 ..    1190    1407 .. 0.96

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 3.2e-42
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg...nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplysls 94 
                    q+k +l r++ +++ ++s++ l++++   ++a+++g++f+++    +s+ ++ r  ++ff++lf++fs+l ++ ++    r++ e+++++ ly++s
     CCD22577.1 501 QVKYILIRNIWRIKNSSSIT-LFQVFGNSVMAFILGSMFYKVMkkgDSSTFYFRGAAMFFAILFNSFSSLLEI-FSLYEARPITEKHRTYSLYHPS 594
                    899**************999.99******************5547666666688*******************.********************** PP

  ABC2_membrane  95 ayvlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkw 188
                    a ++a+vl+e+p  ++ a+ f +i+yflv+++++   ff+++l+ ++ ++a+s l+++++++++++  a++ as++ll + +++Gf ip ++m +w
     CCD22577.1 595 ADAFASVLSEIPPKIATAIFFNIIYYFLVDFRRDggVFFFYFLISIVATFALSHLFRCVGSVTKTLSEAMVPASMLLLAISMYTGFAIPETKMLGW 690
                    **********************************8777*******************************************************55* PP

  ABC2_membrane 189 lqwiaylnPltyavealrsnlf 210
                     +wi y+nP++y++e+l++n+f
     CCD22577.1 691 SRWIWYINPIAYLFESLMINEF 712
                    ********************97 PP

  == domain 2  score: 153.0 bits;  conditional E-value: 9.8e-48
  ABC2_membrane    1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysl 93  
                     +q+k+++ r f+q+wr+p+++ +++ + +++ ++++g+ f++++++ +gl++++l +f+++ ++  +l++  p f+++r ++ +re++s+++s+
     CCD22577.1 1190 YQTKLVTVRVFQQYWRSPEYL-WSKYVLTVFNMVFIGFTFFKADHTMQGLQNQMLSAFMFTVIFNPLLQQYLPGFVQQRDLYeARERPSRTFSW 1282
                     6999*****************.**********************8888888888888888888888**************************** PP

  ABC2_membrane   94 sayvlakvlvelpvsllqalifllivyflvgldls.........rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGf 178 
                      a+++++++ve+p+++++++i  +i+y+ vg++ +         r++lf+ll+ ++++++ slg++ +++ + +e+a++lasl++++ l ++G+
     CCD22577.1 1283 IAFIISQIIVEIPWNFIAGTIAYCIYYYAVGFYANaseanqlheRGGLFWLLATAFFVYIGSLGIAAISFIEVAETAAHLASLLFTMALSFCGV 1376
                     ***************************************9999999************************************************ PP

  ABC2_membrane  179 fipidsmpkwlqwiaylnPltyavealrs 207 
                     + ++++mp++++++++++Plty+++al+s
     CCD22577.1 1377 MATPSAMPRFWIFMYRVSPLTYLIDALLS 1405
                     **************************987 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   3.5e-20   2.5e-17       2     136 ..     174     333 ..     173     334 .. 0.92
   2 ?   -0.8   0.1       2.9   2.1e+03      64     125 ..     437     512 ..     412     515 .. 0.65
   3 !   64.2   0.0   2.5e-20   1.8e-17       1     137 []     892    1043 ..     892    1043 .. 0.93

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 3.5e-20
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................. 79 
                 k ++  lk ge+++++G+ G+G++tLlk ++ +++     +e  i ++g   ke   +++r e+ +  + + + p+ltv e+                 
  CCD22577.1 174 KPMDGLLKSGELLVVLGRPGSGCTTLLKSISSNTHGfnvsKESIISYNGLTPKE-INRHYRGEVVYNAESDIHLPHLTVFETlvtvarlktpqnrikgv 271
                 56677799**************************99999778888888888887.7889********************************99999999 PP

                 ....HHHTCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ....esdeeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                     +++   e a++++gl+++++t+v+++  + +SgG+++rv++a++ ++ +k+ ++D++t
  CCD22577.1 272 dresYAKHVTEVAMATYGLSHTRNTKVGNDLvRGVSGGERKRVSIAEVWICGSKFQCWDNAT 333
                 887766677******************99889****************************99 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.9
                 E-SS--S-TTSBHHHH..............HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  64 lpqepqlfpeltvren..............esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallk 125
                 +pq+p+   e+ ++++              + ++e  +++++  + +  ++   +sp+ +S+ ++++  l r +++
  CCD22577.1 437 IPQTPKDMGEHWLKSEnykrlmeeideslkQNTDEQREVMKEAHIAKQSKRSRPTSPYVVSYMMQVKYILIRNIWR 512
                 4444444444433222355555555655666666677788888888877777778889999999999888888875 PP

  == domain 3  score: 64.2 bits;  conditional E-value: 2.5e-20
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................ 79  
                  l+nv+  +k+g+++a++G +GaGK+tLl +la+ ++     G+i +dg+  ++    s+ ++ig+++q++ + ++ tvre+                
  CCD22577.1  892 LSNVDGWVKPGTLTALMGASGAGKTTLLDCLAERVTMgvITGKICVDGRLRDT----SFPRSIGYCQQQDLHLKTATVRESlrfsaylrqpanisie 984 
                  6799999****************************988899999999876555....9***********99999999*****************998 PP

                  HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran   80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137 
                  e+++ +e++++ l+++  +d vv+  ++ L   q++r+ +   l+ kpkll+ lDEpt+
  CCD22577.1  985 EKNKYVEEVIDILEMEPYADAVVGVAGEGLNVEQRKRLTIGVELAAKPKLLVfLDEPTS 1043
                  88888********************************************98659***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.1   6.9e-34     5e-31       1      91 [.     723     813 ..     723     814 .. 0.98
   2 !   12.0   0.1    0.0002      0.14      33      81 ..    1466    1513 ..    1460    1524 .. 0.79

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 6.9e-34
     PDR_CDR   1 vPsgpgyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlvfkrgkapkk 91 
                 +P gp y nv+ ++rvC +vG++pGq+yV+Gd++l++s+gy+++h+wr fg+ +a+++ff+++yl+++e+++ +k+kge+lvf+++  +k+
  CCD22577.1 723 IPTGPAYINVTGTQRVCGSVGSIPGQDYVDGDRFLRESYGYQHKHKWRGFGVGMAYVVFFFVVYLVLCEYNEGAKQKGEILVFPHSVVRKM 813
                 8***********************************************************************************9988876 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.0002
     PDR_CDR   33 dYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevl 81  
                  d+l+ + +  +s +wrn+gi i+++++  ++ +l+  l +  k++g+v 
  CCD22577.1 1466 DFLK-TVSSDYSRRWRNWGIFICYIAIDYMAAVLFYYLARVPKKSGNVS 1513
                  6666.5677899*************998888888888888888877765 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   5.2e-19   3.8e-16       1      81 []      32     149 ..      32     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 59.5 bits;  conditional E-value: 5.2e-19
  ABC_trans_N   1 eLartlsrqssssssssss.......................e...sssedeeeed........se.Fdlekwlknlreridrdg..ikprklGVvFk 61 
                  +Lar+l+++ss +s s+ +                       e   ++ +++++e         s+ F + +w++n+ +++ +d+  +kp+ l +++k
   CCD22577.1  32 DLARSLTQLSSIQSGSNVNvnvndgltvpdgeapkslysldvEgmnPVFTNPNDEGynehldpnSDnFLSTAWVQNMANLAAADPefYKPYALDCTWK 129
                  59*****99776666666679*****99999999888877661566666666666677778899999******************************* PP

  ABC_trans_N  62 nLtVeGvgsgadyqpTvgna 81 
                  nL+++G +++++yq+T++n+
   CCD22577.1 130 NLSASGDSADVSYQQTFLNM 149
                  ******************97 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1       0.1        75      26      53 ..     176     203 ..     173     209 .. 0.89
   2 !   23.8   0.1   3.8e-08   2.7e-05      15      61 ..     884     930 ..     879     941 .. 0.87
   3 ?   -0.7   0.0       1.3   9.3e+02      67     110 ..     999    1042 ..     991    1070 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.1
      AAA_25  26 vkgllpagelallaGapgtGKttlaldl 53 
                 ++gll  gel ++ G+pg+G ttl+ ++
  CCD22577.1 176 MDGLLKSGELLVVLGRPGSGCTTLLKSI 203
                 689********************98766 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 3.8e-08
      AAA_25  15 laapppprrwlvkgllpagelallaGapgtGKttlaldlalavatGk 61 
                 ++++ ++    v+g++  g+l++l+Ga+g+GKttl+  la  v+ G 
  CCD22577.1 884 IKKETRRILSNVDGWVKPGTLTALMGASGAGKTTLLDCLAERVTMGV 930
                 66777888889*****************************9999665 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.3
      AAA_25   67 vapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlag 110 
                  ++p   +V+ v++E+ + e r+Rl    e ++ ++ l +ld ++
  CCD22577.1  999 MEPYADAVVGVAGEGLNVEQRKRLTIGVELAAKPKLLVFLDEPT 1042
                  6777889*****************95444446677777777544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.066        48      23      45 ..     182     204 ..     171     281 .. 0.88
   2 !   20.9   0.0   5.1e-07   0.00036       7      88 ..     886     967 ..     885    1071 .. 0.56

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.066
      AAA_16  23 rpelvllsGesGvGKsslvrell 45 
                 ++el+++ G +G+G ++l++++ 
  CCD22577.1 182 SGELLVVLGRPGSGCTTLLKSIS 204
                 3489***************9886 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 5.1e-07
      AAA_16   7 eeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd...ggiflrgkcdqlesaipysa.laqalareellrqllde 88 
                 +e++++ls ++ + +++  l+ l G+sG GK++l+++l+++++     g i++ g+ ++   + p+s+ + q+ +  +l ++  +e
  CCD22577.1 886 KETRRILSNVDGWVKPG-TLTALMGASGAGKTTLLDCLAERVTMGvitGKICVDGRLRDT--SFPRSIgYCQQQDL-HLKTATVRE 967
                 68999999999999998.6999*****************988855333333355555555..45555555555533.555554444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.042        30       2      35 ..     187     221 ..     186     246 .. 0.74
   2 ?    0.9   0.0      0.86   6.2e+02      26      69 ..     424     474 ..     409     506 .. 0.73
   3 !   16.8   0.0   1.1e-05    0.0078       3      69 ..     907     988 ..     906    1035 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.042
      AAA_18   2 lltGtpGvGKttlakeLskrl.gfgvnlrdvaken 35 
                 ++ G pG+G ttl k +s+ + gf v   ++++ n
  CCD22577.1 187 VVLGRPGSGCTTLLKSISSNThGFNVSKESIISYN 221
                 589**************999867744444444444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.86
      AAA_18  26 vnlrdvakenglllevdpe.......aldeskrldedkldklldaleenss 69 
                 ++l++   ++g++++++p+       + +++krl e+ +++l ++ +e+++
  CCD22577.1 424 RILNKEMLKKGISIPQTPKdmgehwlKSENYKRLMEEIDESLKQNTDEQRE 474
                 567778888889999999989988888888888888888888888888776 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 1.1e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe...............aldeskrldedkldklldaleenss 69 
                 l+G++G+GKttl + L++r  +gv+ ++++ +++l+++ +p                 ++es+r+    ++ +   +ee ++
  CCD22577.1 907 LMGASGAGKTTLLDCLAERVTMGVITGKICVDGRLRDTSFPRsigycqqqdlhlktaTVRESLRFSAYLRQPANISIEEKNK 988
                 89*****************888888888888888888888874444443335555555555555555555555555555443 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   7.2     2e-06    0.0015     217     342 ..     612     789 ..     542     790 .. 0.58
   2 !   15.5  11.5     1e-05    0.0073     141     320 ..    1220    1410 ..    1155    1499 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2e-06
  ABC2_membrane_3 217 yllqlllilllafglgipfg.nlglllllfllfglayialgyll...sslfknsetaqilifivilllsgffgglfp...ledlpsalkwifsi 303
                      ++++ +++ +      ++f  + g+++++fl+ + a+ al++l+   +s++k+ ++a+   ++ ++ll+++++++++     ++ ++ +wi +i
       CCD22577.1 612 AIFFNIIYYF-----LVDFRrDGGVFFFYFLISIVATFALSHLFrcvGSVTKTLSEAM---VPASMLLLAISMYTGFaipETKMLGWSRWIWYI 697
                      2222222222.....3555543344445555555555555555511156666666655...455554555555553321144566********* PP

  ABC2_membrane_3 304 iPffapglgllrlitgdplwe.....................................................illsliilalfavvylll 342
                      +P+ +++++l+   + d  ++                                                     ++  +++ + f+vvyl+l
       CCD22577.1 698 NPIAYLFESLMINEFHDRHFPcaqyiptgpayinvtgtqrvcgsvgsipgqdyvdgdrflresygyqhkhkwrgFGVGMAYVVFFFVVYLVL 789
                      ********995433333222255555555666667777777777777777777777777777777777777777777777777777777766 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1e-05
  ABC2_membrane_3  141 tsaninvestqleeelsnvasflvgliliilifitasf..iavsi.......veEkesrikelqlvsgvsplqywlskilgdflvyllqlll 223 
                       ++  i+++ +  +   ++ ++++++++++ +if ++++  +  ++       ++E+ sr+   +       ++++++ i + f+++ + + +
       CCD22577.1 1220 NMVFIGFTFFKADHTMQGLQNQMLSAFMFTVIFNPLLQqyLPGFVqqrdlyeARERPSRTFSWIAFI----ISQIIVEIPWNFIAGTIAYCI 1307
                       4555566666667777888999999888888888855421343446666667899999999888666....9999999***********999 PP

  ABC2_membrane_3  224 ill.l.afglgipfgnl...glll.llfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffap 309 
                       + + + +++ + + ++l   g l+ ll   f+  + +lg +  s++  +eta  l+++++ +++ f+g++ + +++p ++    ++ P++++
       CCD22577.1 1308 YYYaVgFYANASEANQLherGGLFwLLATAFFVYIGSLGIAAISFIEVAETAAHLASLLFTMALSFCGVMATPSAMPRFWIFMYRVSPLTYL 1399
                       987444333344444334447777688888888889999999999****9999999999999****************************** PP

  ABC2_membrane_3  310 glgllrlitgd 320 
                       +++ll+++  +
       CCD22577.1 1400 IDALLSVGVAN 1410
                       *****997433 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.17   1.2e+02      95     123 ..     178     207 ..     159     222 .. 0.81
   2 !   19.2   0.0   1.2e-06   0.00087      72     125 ..     875     928 ..     844     967 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.17
                  HHCTT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  95 ellkd.ktsvlvGqSGvGKStLinallpel 123
                   llk+ ++ v++G  G G +tL++++ +++
   CCD22577.1 178 GLLKSgELLVVLGRPGSGCTTLLKSISSNT 207
                  556666999*****************9975 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.2e-06
                  HHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  72 lealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                   ++l y+v + +++t++ l+++  ++k   +++l+G SG+GK+tL++ l+++ ++
   CCD22577.1 875 WRNLCYDVQI-KKETRRILSNVDGWVKPgTLTALMGASGAGKTTLLDCLAERVTM 928
                  5566666654.57778999999999999899******************997554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.38   2.7e+02      24      42 ..     185     203 ..     178     211 .. 0.82
   2 !   15.7   0.1   1.3e-05     0.009      23      42 ..     903     922 ..     895     927 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.38
      AAA_29  24 atlltGpsGsGKSTllDAi 42 
                   ++ G+ GsG +Tll +i
  CCD22577.1 185 LLVVLGRPGSGCTTLLKSI 203
                 67789**********9666 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.3e-05
      AAA_29  23 gatlltGpsGsGKSTllDAi 42 
                   t l+G+sG+GK+TllD +
  CCD22577.1 903 TLTALMGASGAGKTTLLDCL 922
                 4799**************87 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.7   1.2e+03      27      45 ..     186     204 ..     179     370 .. 0.71
   2 ?    2.8   0.0     0.097        70      26      44 ..     904     922 ..     894     994 .. 0.90
   3 !   11.6   0.0   0.00019      0.14     156     213 ..    1030    1087 ..    1022    1094 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.7
                 EEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAil 45 
                  +++G+ GSG + ll +i+
  CCD22577.1 186 LVVLGRPGSGCTTLLKSIS 204
                 5788999999999988883 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.097
                 EEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlldAi 44 
                 +ta++G+ G+GK+ lld +
  CCD22577.1 904 LTALMGASGAGKTTLLDCL 922
                 799*************987 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00019
                  CS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  156 vkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtk 213 
                  +kp+ l++lDe  + LD +   + ++l+++  +n Q i  ++++     ++++ ++ +
  CCD22577.1 1030 AKPKLLVFLDEPTSGLDSQTAWATCQLMRKLADNGQAILCTIHQPSAVLMQEFDRLLF 1087
                  68999*************************************9998888877766655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.023        16       3      31 ..     187     217 ..     185     224 .. 0.86
   2 !   11.4   0.3   0.00039      0.28       3      23 ..     906     927 ..     904     938 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.023
      AAA_28   3 vitGgestGKTtlleaLaar..gypvvpEaa 31 
                 v++G +++G Ttll+ ++++  g++v +E+ 
  CCD22577.1 187 VVLGRPGSGCTTLLKSISSNthGFNVSKESI 217
                 899***************5445***999976 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00039
      AAA_28   3 vitGgestGKTtlleaLaar.g 23 
                 +++G++++GKTtll  La+r  
  CCD22577.1 906 ALMGASGAGKTTLLDCLAERvT 927
                 799***************9952 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00062      0.44       1      19 [.     904     922 ..     904     936 .. 0.91
   2 ?    4.4   0.0     0.039        28     254     296 ..    1030    1070 ..    1022    1077 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00062
      AAA_21   1 lnvliGpNgsGKSnLLdal 19 
                 l++l G+ g+GK++LLd+l
  CCD22577.1 904 LTALMGASGAGKTTLLDCL 922
                 699***************9 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.039
      AAA_21  254 alkkgsllliDEpEngLHPkllrrll..ellkelsrngaQviltT 296 
                  a +k  l+++DEp +gL+   ++  +  +l+++l++ ++Q il T
  CCD22577.1 1030 AKPK-LLVFLDEPTSGLDS--QTAWAtcQLMRKLAD-NGQAILCT 1070
                  5556.89***********9..666667788888888.66665554 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.11        78       1      33 [.     185     217 ..     185     292 .. 0.81
   2 !   12.0   0.0   0.00025      0.18       2      76 ..     905     976 ..     904    1000 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.11
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtl 33 
                 l+++ G pGsG +tl++++  +++++ +s+ ++
  CCD22577.1 185 LLVVLGRPGSGCTTLLKSISSNTHGFNVSKESI 217
                 67899*************999988888888874 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00025
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrr.rlfgtdqqsktdytrvldrlyqilnelarkalsagrnvild 76 
                 + l G++G+GK+tl++ l+++ ++ +++  ++ + rl+ t  ++   y +       +l ++a+ + s ++++ l+
  CCD22577.1 905 TALMGASGAGKTTLLDCLAERVTMGVITGKICVDgRLRDTSFPRSIGYCQQ---QDLHL-KTATVRESLRFSAYLR 976
                 5689***************99999999888877777776655544333332...12222.5555555555555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.055        39       4      29 ..     182     207 ..     179     242 .. 0.84
   2 ?   -2.0   0.0       5.5   3.9e+03      51      90 ..     452     489 ..     448     496 .. 0.74
   3 !   10.5   0.3   0.00079      0.57       5      29 ..     902     926 ..     899     940 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.055
      AAA_22   4 tagilvvtGesGtGKTtllrrlleql 29 
                 +  +lvv G +G+G Ttll+ + ++ 
  CCD22577.1 182 SGELLVVLGRPGSGCTTLLKSISSNT 207
                 56789***************987765 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.5
      AAA_22  51 tsskdllrellralglelkaerlsseell.ealeqalrara 90 
                 ++ k l++e+ + l++++++   ++e +  +++++++++ +
  CCD22577.1 452 ENYKRLMEEIDESLKQNTDE---QREVMKeAHIAKQSKRSR 489
                 46778888888888887777...777777888888887765 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00079
      AAA_22   5 agilvvtGesGtGKTtllrrlleql 29 
                  ++++++G sG+GKTtll  l+e+ 
  CCD22577.1 902 GTLTALMGASGAGKTTLLDCLAERV 926
                 57899*************9999875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0097         7      12      39 ..     178     204 ..     173     215 .. 0.85
   2 !    7.1   0.5    0.0055       3.9      19      41 ..     903     925 ..     895     935 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0097
      AAA_30  12 alltsgdrvavltGpAGtGKttalkalr 39 
                  ll+sg+ + v+ G++G+G tt+lk++ 
  CCD22577.1 178 GLLKSGE-LLVVLGRPGSGCTTLLKSIS 204
                 5788886.99***************986 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0055
      AAA_30  19 rvavltGpAGtGKttalkalrea 41 
                  +++l G+ G+GKtt+l  l+e 
  CCD22577.1 903 TLTALMGASGAGKTTLLDCLAER 925
                 58999************998875 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0072       5.1       2      22 ..     185     205 ..     184     215 .. 0.90
   2 !    7.6   0.2    0.0048       3.4       3      25 ..     905     927 ..     903     940 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0072
                 CEEEEC-TTTCHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklal 22 
                 l+++ G++GsG TtLl+++ +
  CCD22577.1 185 LLVVLGRPGSGCTTLLKSISS 205
                 689***************987 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0048
                 EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawa 25 
                  +l G++G GKTtLl  la+   
  CCD22577.1 905 TALMGASGAGKTTLLDCLAERVT 927
                 6799***********99988765 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.12        88     193     220 ..     411     438 ..     408     487 .. 0.88
   2 ?    9.5   0.0   0.00058      0.42     209     241 ..     895     927 ..     885     933 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.12
                      TSSEEEE----SS-SB-GGGS-TT-EEE CS
  OCD_Mu_crystall 193 gadivvtvTaakapilkaewvkpGahin 220
                       ad ++ vT   + il +e++k G  i 
       CCD22577.1 411 TADFLTSVTSPAERILNKEMLKKGISIP 438
                      5899********************9885 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00058
                      -GGGS-TT-EEEE-S--STT--SB-HHHHHCCE CS
  OCD_Mu_crystall 209 kaewvkpGahinavgadapgkteLdddilkrad 241
                      ++ wvkpG++  ++ga+  gkt L d +  r+ 
       CCD22577.1 895 VDGWVKPGTLTALMGASGAGKTTLLDCLAERVT 927
                      478*********************998887775 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1      0.01       7.2       3      27 ..     186     210 ..     184     213 .. 0.87
   2 ?    7.9   0.2    0.0029       2.1       3      35 ..     905     934 ..     903     945 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.01
                 EEEEESTTCCHHHHHHHHHCT--SS CS
        cobW   3 tvltGflGsGKTtLlnhllenragl 27 
                 +v+ G +GsG TtLl+++ +n++g 
  CCD22577.1 186 LVVLGRPGSGCTTLLKSISSNTHGF 210
                 6899**************9998876 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0029
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklavivNe 35 
                 t l G  G+GKTtLl  l e+     + vi++ 
  CCD22577.1 905 TALMGASGAGKTTLLDCLAER---VTMGVITGK 934
                 7899***********988755...667777665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       4.8   3.4e+03      21      58 ..     185     223 ..     179     246 .. 0.71
   2 ?   -0.7   0.2       2.4   1.7e+03     149     176 ..     452     481 ..     392     492 .. 0.58
   3 ?   13.6   0.3   9.6e-05     0.069      21      39 ..     904     922 ..     900     934 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.8
      AAA_23  21 ltlItGpNGaGKTTildAiklaLyget.prlsrksgrgf 58 
                 l ++ G  G+G TT+l  i   + g+  +++s  s++g+
  CCD22577.1 185 LLVVLGRPGSGCTTLLKSISSNTHGFNvSKESIISYNGL 223
                 66888999*********9988777665344444444455 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.4
      AAA_23 149 kdkkerleelekeleeledekkllekl..e 176
                 ++ k  +ee+ ++l++++de++++ k+  +
  CCD22577.1 452 ENYKRLMEEIDESLKQNTDEQREVMKEahI 481
                 333335666666666666666655555443 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 9.6e-05
      AAA_23  21 ltlItGpNGaGKTTildAi 39 
                 lt++ G  GaGKTT+ld++
  CCD22577.1 904 LTALMGASGAGKTTLLDCL 922
                 899***************8 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0017       1.2       6      44 ..     170     208 ..     167     226 .. 0.82
   2 ?    1.1   0.0      0.29   2.1e+02      16      45 ..     899     928 ..     889     937 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0017
                 THHHHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   6 fkdLDkltsGlqkgdliiiAarpsmGktalalniaenaa 44 
                 f+ L  + + l++g+l+++ +rp+ G t+l  +i +n+ 
  CCD22577.1 170 FQILKPMDGLLKSGELLVVLGRPGSGCTTLLKSISSNTH 208
                 6667777777899*******************9998865 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.29
                 BXTTXEEEEEEXTTSSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  16 lqkgdliiiAarpsmGktalalniaenaav 45 
                 +++g+l+ + + ++ Gkt+l   +ae++++
  CCD22577.1 899 VKPGTLTALMGASGAGKTTLLDCLAERVTM 928
                 5789*****************999998775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.034        25       2      47 ..     187     229 ..     186     237 .. 0.78
   2 ?    3.9   0.0     0.091        65       3      24 ..     907     928 ..     905     957 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.034
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkir 47 
                 ++ G pG G T+l k++ +++  + +++s  +++ +y g ++k+i+
  CCD22577.1 187 VVLGRPGSGCTTLLKSISSNT--HGFNVSKESII-SYNGLTPKEIN 229
                 688**************9995..55777777777.67777776665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.091
                 EESSTTSSHHHHHHHHHHHHTH CS
         AAA   3 lyGppGtGKTllakavakelgv 24 
                 l+G  G GKT+l   +a+ + +
  CCD22577.1 907 LMGASGAGKTTLLDCLAERVTM 928
                 89************99998654 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0099       7.1       2      45 ..     187     230 ..     186     236 .. 0.83
   2 ?    3.1   0.1     0.091        65       5      21 ..     909     925 ..     905     957 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0099
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegkpklpnl 45 
                      vv G pG+G +tl++++ ++ + ++v++++++ ++   pk+ n+
       CCD22577.1 187 VVLGRPGSGCTTLLKSISSNTHGFNVSKESIISYNGLTPKEINR 230
                      99***************988899999999888887766666665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.091
  Viral_helicase1   5 GvpGcGKStlirkllrt 21 
                      G+ G+GK+tl+  l++ 
       CCD22577.1 909 GASGAGKTTLLDCLAER 925
                      999********999987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.034        24       2      46 ..     186     233 ..     185     247 .. 0.89
   2 ?    4.3   0.0     0.051        37       4      25 ..     907     928 ..     905     999 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.034
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrre 46 
                 ++++G pG+g ++l +++++ +   n + e +  + ++t++++  +++
  CCD22577.1 186 LVVLGRPGSGCTTLLKSISSNThgfNVSKESIISYNGLTPKEINRHYR 233
                 5789******************99999999999999999999988876 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.051
                 EE--SSSSHHHHHHHGGGGBS- CS
       AAA_5   4 LvGppGtgKselaerlaaalnr 25 
                 L G++G gK++l + la++++ 
  CCD22577.1 907 LMGASGAGKTTLLDCLAERVTM 928
                 89**************999854 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0      0.02        15       2      46 ..     187     232 ..     186     267 .. 0.82
   2 ?   -2.5   0.2       5.3   3.8e+03     165     198 ..     447     478 ..     445     481 .. 0.81
   3 ?    4.4   0.1     0.041        30       5      27 ..     909     931 ..     906     939 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.02
                 EEEESTTSSHHHHHHHHHCCST.CEEEE-HHHHCCSSSSHHHHHHH CS
         dNK   2 vveGnIgaGKstlvklLskklg.vkvfeEpvdkwtnvqknlLekfY 46 
                 vv G  g+G +tl+k +s ++  ++v +E++  ++    + ++  Y
  CCD22577.1 187 VVLGRPGSGCTTLLKSISSNTHgFNVSKESIISYNGLTPKEINRHY 232
                 788999*********88766655******99999544446666666 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.3
                 HHHTSGGCS-EEEEETSS.-TTTHCCHHHHHHHH CS
         dNK 165 ewlkklnevpvlvidveeldlvaeeekredvvee 198
                 +wlk+ ++   l+++++e  l ++ +++++v++e
  CCD22577.1 447 HWLKS-ENYKRLMEEIDE-SLKQNTDEQREVMKE 478
                 67776.667789999999.999999999999987 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.041
                 ESTTSSHHHHHHHHHCCSTCEEE CS
         dNK   5 GnIgaGKstlvklLskklgvkvf 27 
                 G  gaGK+tl++ L++++ + v+
  CCD22577.1 909 GASGAGKTTLLDCLAERVTMGVI 931
                 788************99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1187  (0.0662056); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 1.11u 0.32s 00:00:01.43 Elapsed: 00:00:00.48
# Mc/sec: 9685.83
//
Query:       CCD22578.1  [L=157]
Description: hypothetical protein NDAI_0A04210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1126.32
//
Query:       CCD22579.1  [L=242]
Description: hypothetical protein NDAI_0A04220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-10   41.2   0.0    5.5e-10   39.5   0.0    1.9  3  Ribosomal_L23  Ribosomal protein L23


Domain annotation for each model (and alignments):
>> Ribosomal_L23  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.49   8.9e+03       5      25 ..      27      51 ..      23      55 .. 0.58
   2 !   39.5   0.0   3.1e-14   5.5e-10      19      82 ..      75     138 ..      62     142 .. 0.83
   3 ?   -2.8   0.1      0.47   8.4e+03      49      53 ..     219     223 ..     207     234 .. 0.46

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.49
                   EE--SHHHHHHHTT..E...EEEEE CS
  Ribosomal_L23  5 kPvitEkstklaek..n..kyvFeV 25
                   kP ++ k  +l+ k  +  k  F+V
     CCD22579.1 27 KPTFSNKILSLTRKsiEdgKSHFRV 51
                   6777777776664422123666766 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 3.1e-14
                    E.EEEEE-SS-THHHHHHHHHHHHT--EEEEEEEEE--EBESSSSS..EEBE--EEEEEEEESSS- CS
  Ribosomal_L23  19 nkyvFeVakdanKleikkaveklFgVkVekVntlnvkgkkkrvgrk..vgrrksyKkaiVtLkege 82 
                     ++ F V+k++nKl++++++ +++g++  +++t+ ++g    vgr     r +++Kk+++++  +e
     CCD22579.1  75 YQAKFIVPKSFNKLDLRDYLYHIYGLRAMNITTQLLPGTYSTVGRMgsRFRGPQIKKMTIDM--EE 138
                    3799************************************966666555699**********..44 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.47
                    EEEEE CS
  Ribosomal_L23  49 Vntln 53 
                    +nt+n
     CCD22579.1 219 INTAN 223
                    22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1839.22
//
Query:       CCD22580.1  [L=171]
Description: hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-18   65.3   0.1      7e-18   64.8   0.1    1.2  1  S1             S1 RNA binding domain
    1.6e-16   60.4   0.0    3.3e-16   59.4   0.0    1.5  1  SHS2_Rpb7-N    SHS2 domain found in N terminus of Rpb7p/Rpc25
    8.7e-06   26.0   0.0    1.5e-05   25.2   0.0    1.4  1  RNA_pol_Rbc25  RNA polymerase III subunit Rpc25


Domain annotation for each model (and alignments):
>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.1   1.2e-21     7e-18       1      70 [.      80     157 ..      80     161 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 1.2e-21
                 HSTTTCEEEEEEEEEETTEEEEEETTTEEEEEEGGGSSSS.........CEESCHHHCEETTEEEEEEEEEEETTTTEE CS
          S1   1 kpekgevveGeVtsvtkgGafVelgngvegfvpaselsrd.........arvedpdevlkvGdevkvkvlkvdkdrrri 70 
                 kp+kgevv+G+V+s++++G++V++g ++++fv+++++++d         ++++++++v++++ +++vk++++  +  +i
  CCD22580.1  80 KPFKGEVVDGTVVSCSQHGFEVQVG-PMKVFVTKHLMPSDlmfnagsnpPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157
                 79***********************.**********************************************9998844 PP

>> SHS2_Rpb7-N  SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0   5.5e-20   3.3e-16       2      70 .]       9      79 ..       8      79 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 5.5e-20
                 EEEEE-GGGTTSTHHHHHHHHHHHHHTTBEETTTEEEEEEEEE..EEECCEEE-TTTSSEEEEEEEEEEEE CS
  SHS2_Rpb7-N  2 dtvrlePsylgstledallerllekyegkvvpslGvivavldi..aeysegkvlggsGsvyvrVtfralvF 70
                 +++ l+Ps++g+ +++ l+ +ll+ +eg +  ++G+i++vld    e++ g++l+ +Gs+ ++V++ra+vF
   CCD22580.1  9 LNITLHPSFFGPRMKQFLKTKLLQEVEGSCTGKFGYILCVLDYdkIEIERGRILPTDGSAEFNVKYRAIVF 79
                 5899***************************************7778999********************9 PP

>> RNA_pol_Rbc25  RNA polymerase III subunit Rpc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   2.5e-09   1.5e-05       1      73 [.      81     149 ..      81     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.5e-09
                    -STTSEEEEEEEEEETTCEEEEBTTBSEEEEECCCCSTTEEEECCCTCEEEEESSSEEEEE-TTSEEEEEEEE CS
  RNA_pol_Rbc25   1 PfvgevltgkiksstregikvslgffddifvpkelLfepsefdeeeqawvweveeeeelyldvgeeirfrvee 73 
                    Pf+gev+ g++ s++++g +v++g ++ +fv k+l++   +f+  ++   ++    +e  + +  +ir+++e 
     CCD22580.1  81 PFKGEVVDGTVVSCSQHGFEVQVGPMK-VFVTKHLMPSDLMFNAGSNPPSYQS---SEDVITIKSRIRVKIEG 149
                    9***********************885.9**************9998776666...55567777888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1264.94
//
Query:       CCD22581.1  [L=555]
Description: hypothetical protein NDAI_0A04240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-98  328.9   0.0    4.4e-98  328.2   0.0    1.4  1  DIT1_PvcA  Pyoverdine/dityrosine biosynthesis protein


Domain annotation for each model (and alignments):
>> DIT1_PvcA  Pyoverdine/dityrosine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.2   0.0  2.4e-102   4.4e-98       1     275 [.     206     515 ..     206     517 .. 0.96

  Alignments for each domain:
  == domain 1  score: 328.2 bits;  conditional E-value: 2.4e-102
                 HHHHHHCT--EEEEE-------S-TTTSS-SS--HHHHHHHHHHHHHHHHHHHHSTT-EEEEEE--HHHHGGGTT--HHHHHHHHHHHHHHHHHCT..- CS
   DIT1_PvcA   1 veefvsrkepielvLPAFPcKSpnkeKvlgklPDkgEelaLerLnklceeieevYepGakltiisDghvfsDligvddeevdaYgeeLrelakekg..l 97 
                 v++f++r  +ie+vLPAFPcKS+n +Kv++++PDkgEelaL+rL k +e+ +e+Y+pG k++i+sDghvfsD+igvdd+ v++Y+++L+el+++++   
  CCD22581.1 206 VRYFTDRMLKIECVLPAFPCKSSNGDKVHSTVPDKGEELALRRLIKAAEQFSEIYPPGLKFWIVSDGHVFSDCIGVDDDIVTHYTHKLHELYANIAtpG 304
                 789********************************************************************************************9996 PP

                 TT.EEEE-GGG-GGGGGG......................TT-HHHHHHHHHHHH---HHHHHHHHT.TSHHHHHHHHHHHHHHHHHH..--TT--S-H CS
   DIT1_PvcA  98 ed.iefvrlkdlleseeeaeeeseells........eeeyleeaeklrkeLlksfgedeeelrkeik.ededtlalYrgfskflleDlaslpeakklsk 186
                 +d i+f++l+d++++ +++e +++++++         ++++ +++ +r++L+k++++d+ +lr++i+ + +++l+lYrgfs+f++eDl++l+++k++s+
  CCD22581.1 305 TDyIGFCGLNDIFFDGVTQELFNSKWVEdvkiehytGSKICPTSDLSRQILMKACDTDDGHLRRDIAtDGHPRLHLYRGFSRFMMEDLKMLSHFKDSSR 403
                 666************999******************9******************************8999**************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEESS---TTSSEEEB-SSTTS-TT....................S-GGGSEEE.EETTE....EE CS
   DIT1_PvcA 187 kklkkevkkvakemikRnkaysnlvelkfpdhvRLSIHasknggpKlgikllpqkdse...................iptPWhscvvveadge....vl 262
                 k +kk+++k+a++mi+Rn+aysnlvel fp+h+RLSIHa++n+gpK+gik++++++++                   iptPWh+cvv+++++e     +
  CCD22581.1 404 KGFKKTISKIAFNMIRRNDAYSNLVELIFPHHMRLSIHAHTNSGPKFGIKVISSDQCKiiktfdgfeeepkfedllhIPTPWHNCVVKVKGSEstraQF 502
                 *****************************************************99999*****************************998877444467 PP

                 EE-HHHHHHTT-E CS
   DIT1_PvcA 263 llkkseveedale 275
                 +l+ks+v ++a++
  CCD22581.1 503 YLTKSKVIKEAMD 515
                 8889998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4162.01
//
Query:       CCD22582.1  [L=534]
Description: hypothetical protein NDAI_0A04250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-43  147.8   0.2    5.4e-43  147.4   0.2    1.0  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.4   0.2     3e-47   5.4e-43       9     445 ..      69     496 ..      61     511 .. 0.85

  Alignments for each domain:
  == domain 1  score: 147.4 bits;  conditional E-value: 3e-47
                 CCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHHHHHT CS
        p450   9 lvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrfltptlt 107
                 ++ +++ +++++  + ++rk  +kyg  +++++gs+  +++s+pe+  + +++++ + ++  +++  ++   ++ g +v+ a g+ w+  R ++ + l+
  CCD22582.1  69 FLPSIFDIDQTQLYNIYIRKSMEKYGA-VKIFFGSRWNILVSRPEYLAQMFKDENTFAKSGNQKKIPYSVIAAYTGDNVISAHGDVWRTYRGIMANGLQ 166
                 555677777777777789999****87.69************************98888877888889999**************************** PP

                 SHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCCSCHHH CS
        p450 108 sfgklsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkylptkll 206
                 +f ++++    ++  + + +++ k+ +    + + +l+++ ald i+++++g  f++l+ e +     + ++l+++ ++ ++ ++l+fp+++ l  + +
  CCD22582.1 167 QFDSKPFYTNSKKFCKLVNDEVIKSDSNE--VIMGPLIQRLALDNISQVVLGFDFGTLNGEAN----PLHRHLLRIKKQIFHPFFLTFPFFDKLGFPAR 259
                 **555666666666666666666555555..99***********************9999966....66677777778888999*****8888888888 PP

                 HHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH CS
        p450 207 rklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevqeklreEide 305
                 +k  + v+k+ +ll   +++   +  +   ++ +f++  l++   ++++  ++ ++l+ ++  ll+aG+++    l+ +L ++ak+ ++    + Ei e
  CCD22582.1 260 KKGFKDVEKFRELLVTRVQDELVNNYKF--EQTSFTSSDLIKA--YNNK-IIDYKQLTDNIVILLVAGHENPQLLLTTCLCLMAKYHDTW---QTEIWE 350
                 8888666666666666666655555555..8999999999995..8888.9**********************************98875...677777 PP

                 HCCTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT.EEE-TT-EEEEEHHHHHT-TTTS.SSTTS--GGGGB-TTS......CTE CS
        p450 306 vlgdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg.ylipkGtevivnlyalhrdpevf.pnPeeFdpeRFldekg......nsk 396
                   +++   t ++l++ p+l+ +i E+ Rl+p++ + + R++ k ++++   +ipk  +  + +  + +d++ + + +++Fdp R+  +        +++
  CCD22582.1 351 QTKNA--STTKELNENPLLNSFIFEAVRLYPPLNTIINRKTIKACKLGPeIVIPKILMLGIIVLVCTHDKKNWgNTADVFDPLRWGTDIDtimtnwKKS 447
                 77664..599*************************************988***********************999*********99977999997554 PP

                 SSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGE CS
        p450 397 rksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdppp 445
                 +  + +  F  G+R+C+Ge+lA  e+++ l+ ++++F+++l p  +++ 
  CCD22582.1 448 KTVCTMPSFHGGRRACLGEKLALQEIRISLVEFIRKFDFKLAPSWEEKL 496
                 55555556********************************998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.30s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3732.55
//
Query:       CCD22583.1  [L=345]
Description: hypothetical protein NDAI_0A04260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-70  236.6   0.0    5.3e-70  236.4   0.0    1.0  1  IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase


Domain annotation for each model (and alignments):
>> IU_nuc_hydro  Inosine-uridine preferring nucleoside hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.4   0.0     3e-74   5.3e-70       2     304 ..       7     321 ..       6     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: 236.4 bits;  conditional E-value: 3e-74
                   EEEEEE--SHHHHHHHHHHHCTHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHHCTTT.S-EEEE-SS-SSSSS-SHH.HHTTTSS.TSS-.--SSH CS
  IU_nuc_hydro   2 kvilDtDpGiDDalAlllalaespeiellgittvaGnvsleqatrnalrvlealggrddipvyaGaekpllrekaaae.ihGedGl.gdvllpeper 96 
                   +++lD+DpG+DDa+A+lla+ + p+++l+gi++++Gn++ e++  na+++l+a+g+++++pv++Ga+ p+ r+++ a+ ihG +Gl g++llp+pe 
    CCD22583.1   7 PIWLDCDPGHDDAIAILLACFH-PAFKLIGISACYGNSTPEHTDYNARSLLTAMGKAHSVPVFKGAQVPWFRKPEYAPdIHGATGLdGTSLLPTPEC 102
                   89*****************997.*********************************888**************665555*******88889999854 PP

                   .CSCSSHHHHHHHHHHHHCHHTTTTEEEEECS-SHHHHHHHHHTCCHHHHEEEEEEE---SS.S--SSSSSS-HHHHHSHHHHHHHHHT.S-E...E CS
  IU_nuc_hydro  97 .kaesesavdalidaveaareypgevtlvatGplTNiAlalrldpelakkvkrlviMGGaft.arGNvtpvaEfNifvDPeAAkiVles.apv..ki 188
                      +++  ++a+ +a+    +ypg+++lv+tG+lT +A++l+++p+l+k +++++iMGG f+ ++ N++ +aEfNi+vDP+AA+++++  + v  k+
    CCD22583.1 103 sSRDDMTYLEAMEKAI---LKYPGQISLVSTGALTSVATLLKEKPHLKKCIRHISIMGGGFGlGNKNINLSAEFNIWVDPHAANFIFHDtE-VktKC 195
                   2444445557777777...899999************************************975557789*****************9751.356** PP

                   EEE-HHHHTTSCHEECHHHHHHHHCST..CBHHH..HHHHHHHHHHHHHHHHHH.SSEEE-HHHHHHHHHH-.....G.GGEEE..EEEEEEE.ESS CS
  IU_nuc_hydro 189 tlvpldvthkvqalltseeveelaale..kglga..fladllefyikaykeaeg.sdgaplhDplavavald.....p.elvtt..krlavdv.ele 271
                   +l+pl++th    +++++++e     +  ++     ++ +l++f+ ++yk+ +g  dg+p+hDpl+++ +l+     p + ++   +r++v+v + +
    CCD22583.1 196 ILIPLNLTH--M-AIATKDIEVKILGDgnSK--LrkLFFELFQFFGHTYKDIQGfDDGPPVHDPLTLLPLLEcygwyPsSTIQFeyRRMDVNViD-D 286
                   *********..6.677777777323222233..245999******************************99977766333343312556665532.2 PP

                   .SSTTTTEEE.EETSTTTTS--EEEEEEE-HHHHH CS
  IU_nuc_hydro 272 .ggltrGrtv.vdlrrlkkaknvkvatevdverfl 304
                    + ++ Gr   v+   +++++ + v ++++   f+
    CCD22583.1 287 lKAPDVGRIFsVKEYPRNSNEGIIVGRHLNISFFW 321
                   46688887742333333555555556666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       242  (0.0134977); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2505.96
//
Query:       CCD22584.1  [L=215]
Description: hypothetical protein NDAI_0A04270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-09   36.2   0.2    8.2e-09   35.2   0.2    1.6  1  Pribosyltran  Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.042   12.6   0.0      0.077   11.8   0.0    1.4  1  Fe-ADH        Iron-containing alcohol dehydrogenase
       0.11   11.5   0.0       0.13   11.2   0.0    1.3  1  3Beta_HSD     3-beta hydroxysteroid dehydrogenase/isomerase f


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.2   1.4e-12   8.2e-09      17     119 ..      19     135 ..       6     176 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.4e-12
                   ETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHS......TT-EE-EEEEEE-TTT--EE..................EE----TTSEEEEE-SEE CS
  Pribosyltran  17 rlaaeileeyngkpdvvvgiargGvpfakiladeL......evplayvrkvkyrpdgseeaargssdes..........rlledpagkkVliVDDil 97 
                   + +ae++  +n+kpd++++i  gG+++a il   L      +++++ +  + y++ ++ +  +  +  +          +   d+ gk VliVD + 
    CCD22584.1  19 QVSAERI--KNFKPDLIIAIGGGGFIPARILRTFLkepgvpTIRIFAIILSLYEDINTVGSEKEEVGVTvkrtqwidyeQCKLDLVGKNVLIVDEVD 113
                   3444455..55************************999666444444444444444443333333333377788999999***************** PP

                   SSSHHHHHHHHHHHCC-BSEEE CS
  Pribosyltran  98 dtGgTllaalelLkekgpeevr 119
                   dt +Tl++al  L++  +e+ +
    CCD22584.1 114 DTRTTLHYALSELEKDAAEQAK 135
                   ***************9999544 PP

>> Fe-ADH  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.3e-05     0.077      73      94 ..      21      42 ..       8      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.3e-05
                HHTTS-TT.--EEEEEESHHHH CS
      Fe-ADH 73 aaalareegadvviavGGGsvi 94
                 a++++++++d++ia+GGG  i
  CCD22584.1 21 SAERIKNFKPDLIIAIGGGGFI 42
                57899**************665 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.2e-05      0.13       3      33 ..      36      66 ..      34     139 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.2e-05
   3Beta_HSD  3 tGgaGFlGralvkeLvrleelkevrvlDlre 33
                +Gg+GF+ +++ ++++++  + ++r++ +  
  CCD22584.1 36 IGGGGFIPARILRTFLKEPGVPTIRIFAIIL 66
                8*************************98543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1648.66
//
Query:       CCD22585.1  [L=951]
Description: hypothetical protein NDAI_0A04280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-17   60.7   0.2    3.8e-16   58.7   0.2    2.2  1  IBN_N          Importin-beta N-terminal domain
  ------ inclusion threshold ------
      0.042   13.2   2.3       0.38   10.1   0.0    3.5  5  Npa1           Ribosome 60S biogenesis N-terminal
       0.19   12.3   1.0        1.2    9.8   0.1    3.0  2  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
        1.3    8.7   4.8        2.2    8.0   0.1    2.9  3  DUF445         Protein of unknown function (DUF445)


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.2   8.5e-20   3.8e-16       1      74 []      25      97 ..      25      97 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 8.5e-20
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnllgs 74
                Ae+qL  +++qpgf  +ll  + n++ ++ +R++A++y+kn+i+++W +++++  + ++e++ I++nl+++l++
  CCD22585.1 25 AENQLYTFQQQPGFTAYLLAAINNDTIPETTRLSAVIYFKNKIQRSWGSKAAD-GIKEDEQQAIKDNLIQTLVK 97
                8***********************************************66666.*****************985 PP

>> Npa1  Ribosome 60S biogenesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   8.4e-05      0.38      19     107 ..      83     172 ..      66     203 .. 0.82
   2 ?   -4.2   0.0       1.9   8.3e+03     270     309 ..     250     289 ..     242     299 .. 0.69
   3 ?   -0.3   0.0      0.12   5.6e+02     269     318 ..     384     444 ..     338     449 .. 0.74
   4 ?   -1.5   0.0      0.27   1.2e+03     140     183 ..     522     566 ..     518     649 .. 0.77
   5 ?   -2.0   0.0      0.38   1.7e+03     144     179 ..     909     944 ..     892     947 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.4e-05
        Npa1  19 llsavlallalllrllsshldfreeglelikriLqk.....hlkllyrnlssskeslisptLrLlteivsfdggalarevlrsfdfslkvlpkl 107
                   +a+ + l ++l  +s++ ++r++++e ik iL++      l+++++ l+s+ +++  p++ L+ +i++     +++++++++    +v+++l
  CCD22585.1  83 EQQAIKDNLIQTLVKFSENNHIRPHIVEAIKGILDNndpwdLLDTIKQMLTSGDHQYLYPSIILIHTICKV----HRWDMIDKRSYIDNVVEQL 172
                 56789999****************************9998779**********************999994....5666666666555555555 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.9
        Npa1 270 gsevtvnkksfkvyNklLlnllktLkpwederqqeLllki 309
                 ++ v+vnk  f+  N+ +++  k+ k  +de+ q  +++i
  CCD22585.1 250 DKRVKVNKWGFGNLNRFIHKYSKSTKIITDELIQYVFTSI 289
                 5666777777777788888888888877777777777766 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.12
        Npa1 269 e............gsevtvnk.ksfkvyNklLlnllktLkpwederqqeLllkilkacPeLva 318
                 +            + +++ n+  sf  +N +L ++  + +  +   +qe ++ki++ + eL+ 
  CCD22585.1 384 DvaasdfifnlghKHPEHLNYiLSF--ANGILGSFSENVNDRQLAYKQEGAMKIMSVAFELLD 444
                 1455566666665566666666666..9******************************99975 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.27
        Npa1 140 lssgnpslkkdlLeq.kkilsalfkglkeDppetvqevLetlkek 183
                 l ++np++ + + +q  +i+++l+k +ke  +++  ev+e++ ek
  CCD22585.1 522 LVVSNPQIHSSIASQvPGIMEKLLKFAKEFEIDIFPEVMEVFVEK 566
                 667777888888888888888888877776666666666666554 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 0.38
        Npa1 144 npslkkdlLeqkkilsalfkglkeDppetvqevLet 179
                 ++  k+   e+ + +++++++l+eD+++ ++ +Le 
  CCD22585.1 909 HSFFKQVEGENPNRYQQIIQSLNEDQKDSLSIILEY 944
                 555555555667778999999999999999999986 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00027       1.2      21      77 ..     165     221 ..     157     227 .. 0.75
   2 ?   -2.9   0.1       2.4   1.1e+04      55      79 ..     545     569 ..     541     572 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00027
  Vac14_Fab1_bd  21 ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklv 77 
                    i++++e++ +++ +  s   +   y ++E ly i k  k ++l+++ + f+ l kl 
     CCD22585.1 165 IDNVVEQLFPIIEQLTSQLVNAPDYRSSELLYLILKSFKFACLNNFPSYFKDLKKLN 221
                    44455555544444444445555799**************************99986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.4
  Vac14_Fab1_bd  55 akvakgevlkllneifdalvklvaD 79 
                     k ak+  +  + e+ +++v+ +aD
     CCD22585.1 545 LKFAKEFEIDIFPEVMEVFVEKFAD 569
                    5677777777888888888777777 PP

>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1   0.00049       2.2      87     190 ..      33     135 ..      13     149 .. 0.79
   2 ?    1.2   0.1     0.057   2.6e+02      49     148 ..     499     588 ..     489     669 .. 0.57
   3 ?   -1.2   0.1      0.31   1.4e+03     174     224 ..     882     933 ..     847     945 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00049
      DUF445  87 aiveellkeiledlddesikellkknlkkkleevipepllgkllellleeerhkkllddlldriknllkdeevkekikelidelieeesgklvlesivs 185
                 +++  + + +l +++++ i+e  +  +  + +  i + + +k+    ++e+++++++d+l++ + ++ ++++ +  i e+i+  + ++ ++ +l+ i +
  CCD22585.1  33 QQQPGFTAYLLAAINNDTIPETTRLSAVIYFKNKIQRSWGSKA-ADGIKEDEQQAIKDNLIQTLVKFSENNHIRPHIVEAIKGILDNNDPWDLLDTIKQ 130
                 5555666667777777777777776666666666666666666.666799999***********************************99999****** PP

      DUF445 186 mflre 190
                 m++++
  CCD22585.1 131 MLTSG 135
                 *9988 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.057
      DUF445  49 VeehLLtkeslakkLkeaevasklaewlknptnkeslaaiveellkeiledlddesikellkknlkkkleevipepllgkllellleeerhkkllddll 147
                   +h+L+++s+  +++ a+   +l  +++np+  +s+a++v  +++++l++ ++ +i  +        ++ev  e+++++l  + ++ + ++ l++++l
  CCD22585.1 499 AYTHFLNSDSIPVQVEAADALRSL--VVSNPQIHSSIASQVPGIMEKLLKFAKEFEIDIFP------EVMEVFVEKFADEL--TPYATDLAQGLVNQFL 587
                 557788888887777776666554..45577777777777777777777765555543322......23333333333333..3333344444444444 PP

      DUF445 148 d 148
                 +
  CCD22585.1 588 Q 588
                 4 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.31
      DUF445 174 esgklv...lesivsmflreltsilekvksdpdhllreeedkkvreliadllnd 224
                 e+++++   ++ + +++l++  ++ ++v+s   ++++ e  +  ++ i++l +d
  CCD22585.1 882 EEEEYIdeiDDDMKETVLDQ-MNMFNEVHSF-FKQVEGENPNRYQQIIQSLNED 933
                 22333333344444555555.4444444422.3333333333334444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 6858.19
//
Query:       CCD22586.1  [L=426]
Description: hypothetical protein NDAI_0A04290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-46  156.8   0.0    1.1e-45  155.2   0.0    1.9  1  AAA              ATPase family associated with various cellul
    7.4e-09   35.4   0.1    5.8e-08   32.6   0.0    2.4  2  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain
    3.3e-08   33.8   0.0    6.8e-08   32.8   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
    1.6e-07   31.9   0.1    3.4e-05   24.3   0.0    3.2  3  AAA_16           AAA ATPase domain
    1.6e-07   31.4   0.1    6.5e-07   29.4   0.1    2.0  1  AAA_5            AAA domain (dynein-related subfamily)
    5.6e-05   23.4   2.8     0.0043   17.3   0.0    3.0  3  AAA_22           AAA domain
    5.7e-05   22.4   0.0    9.7e-05   21.6   0.0    1.4  1  DUF815           Protein of unknown function (DUF815)
    0.00044   20.0   0.0     0.0012   18.6   0.0    1.7  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00045   20.0   0.2     0.0012   18.7   0.2    1.7  1  AAA_lid_3        AAA+ lid domain
    0.00079   20.0   0.0     0.0072   16.9   0.0    2.4  3  AAA_18           AAA domain
    0.00082   19.3   0.2     0.0028   17.6   0.0    2.0  2  NTPase_1         NTPase
     0.0019   18.6   0.0     0.0039   17.5   0.0    1.6  1  RNA_helicase     RNA helicase
      0.002   18.2   0.1     0.0075   16.3   0.0    1.9  2  AAA_14           AAA domain
     0.0021   18.1   0.0     0.0037   17.3   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0028   17.2   0.0      0.026   14.0   0.0    2.1  2  AAA_7            P-loop containing dynein motor region
     0.0029   17.4   0.0     0.0058   16.4   0.0    1.5  1  AAA_24           AAA domain
      0.003   17.4   0.0      0.011   15.5   0.0    2.0  1  AAA_3            ATPase family associated with various cellul
     0.0037   16.5   0.0     0.0066   15.7   0.0    1.5  1  TIP49            TIP49 P-loop domain
     0.0043   16.8   0.0      0.012   15.4   0.0    1.8  1  AAA_30           AAA domain
     0.0056   16.8   0.0      0.014   15.6   0.0    1.7  1  AAA_33           AAA domain
     0.0059   16.0   0.1       0.44    9.9   0.0    2.5  2  TniB             Bacterial TniB protein
     0.0069   15.8   0.1      0.019   14.3   0.0    1.7  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0096   15.6   0.0       0.19   11.4   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.012   15.5   0.1       0.12   12.3   0.0    2.4  2  NACHT            NACHT domain
      0.015   15.6   0.0      0.034   14.4   0.0    1.7  1  AAA_28           AAA domain
      0.025   14.5   0.1       0.37   10.7   0.0    2.5  2  ATPase_2         ATPase domain predominantly from Archaea
      0.026   14.3   0.2      0.075   12.8   0.0    1.8  2  AAA_11           AAA domain
      0.029   14.1   0.0      0.072   12.8   0.0    1.6  1  IstB_IS21        IstB-like ATP binding protein
      0.056   12.5   0.0       0.14   11.3   0.0    1.6  1  MCM              MCM P-loop domain
       0.11   12.8   0.1       0.37   11.1   0.0    1.8  1  AAA_19           AAA domain
       0.13   11.9   1.3       0.48   10.0   0.1    2.3  3  AAA_25           AAA domain
        1.5    8.1   5.3        3.1    7.1   0.9    2.7  3  DnaB_C           DnaB-like helicase C terminal domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   0.0     2e-48   1.1e-45       1     131 [.     207     339 ..     207     340 .. 0.97

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 2e-48
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vllyGppGtGKT+l+kava+++++ f++++gse++ ky+ge+++ +r++f+ a+e+a psi+fiDE+d++a++r   ++++++e +r++ +Llt++dg+
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVANSTNAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRfdaQTGSDREVQRILIELLTQMDGF 304
                 79******************************************************9.*****************9888899999************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 +++++ v vi+atnr d+ldpallr gR+drkie++
  CCD22586.1 305 DQSTN-VKVIMATNRADTLDPALLRpGRLDRKIEFP 339
                 **855.***************************997 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0     1e-10   5.8e-08       1      57 []      94     149 ..      94     149 .. 0.96
   2 ?   -0.5   0.0       2.2   1.3e+03      27      41 ..     317     331 ..     307     332 .. 0.84

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1e-10
                     EEEEEEE-TTSSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB   1 VatVsEvlddteraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkLP 57 
                     +++  E +d  +  iV ++++  +vv++ + ++re L+p+ +Va+++++++ +++LP
      CCD22586.1  94 IGQFLEPIDQ-NTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILP 149
                     6788899999.999******************************************9 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.2
                     EE-GGGSSST--TTE CS
  Prot_ATP_ID_OB  27 slagavpremLrpgD 41 
                     ++a+ ++++ Lrpg 
      CCD22586.1 317 NRADTLDPALLRPGR 331
                     67999********96 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.2e-10   6.8e-08       6     103 ..     207     298 ..     202     320 .. 0.90

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.2e-10
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqi 102
                 +ll gp g+Gkt+l ka+a+  ++    ++ir++ se+      + l +     ++    a e+   i+++DE+d i+ k+   +  S  +Vqr+L  +
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVANSTNA----AFIRVNGSEFVH----KYLGEGPRMVRDVFRLARENApsIIFIDEVDSIATKRFDAQTGSDREVQRILIEL 297
                 6899******************96....************....99889889999999999999899************99999999*********999 PP

                 H CS
       AAA_2 103 l 103
                 l
  CCD22586.1 298 L 298
                 8 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       2.3   1.3e+03      41      63 ..      94     116 ..      23     157 .. 0.65
   2 !   24.3   0.0   6.1e-08   3.4e-05      15      63 ..     195     240 ..     192     251 .. 0.80
   3 ?    3.2   0.0      0.19     1e+02     126     146 ..     255     285 ..     249     313 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 2.3
      AAA_16  41 vrellralekdggiflrgkcdql 63 
                 + ++l+++ ++ gi+ +++  ++
  CCD22586.1  94 IGQFLEPIDQNTGIVSSTTGMSY 116
                 44555555555555555555555 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 6.1e-08
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 ++e++  + p+ vll+G++G+GK+ lv++++++ +++   f+r +  ++
  CCD22586.1 195 LYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTNAA---FIRVNGSEF 240
                 56667777789********************876655...666655554 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.19
      AAA_16 126 llallsrderplvlvlDdlq...........w 146
                  ++l+++   p ++++D+++            
  CCD22586.1 255 VFRLARE-NAPSIIFIDEVDsiatkrfdaqtG 285
                 4467777.778*********777764433332 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   1.2e-09   6.5e-07       1     136 [.     206     328 ..     206     329 .. 0.82

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.2e-09
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllle 97 
                 +vlL GppGtgK++l++ +a  +n+ +  v+++++  +    g+r +           + r ar   ++i+++DEv+ + ++ +++      e ++ l 
  CCD22586.1 206 GVLLYGPPGTGKTMLVKAVANSTNAAFIRVNGSEFVHKYLGEGPRMV---------RDVFRLARenAPSIIFIDEVDSIATKRFDAQTGSDREVQRILI 295
                 59********************************9999999999998.........777778887789************9999999776555555555 PP

                 -SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  98 eggelvkaknddllerfrviatanpldrslnelspalrs 136
                 e+ ++++     +  ++ vi+++n++d     l+pal++
  CCD22586.1 296 ELLTQMDGFD--QSTNVKVIMATNRAD----TLDPALLR 328
                 5555554433..2344***********....88888875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       3.5     2e+03      46      89 ..      16      69 ..       5      93 .. 0.58
   2 !   17.3   0.0   7.6e-06    0.0043       8      40 ..     207     230 ..     202     245 .. 0.79
   3 ?    4.4   0.2     0.074        41      84     127 ..     257     314 ..     246     321 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.5
      AAA_22 46 tlpsstsskdllrellralglelka..........erlsseellealeqalrar 89
                + p s+s ++ll++l ++   ++++          +  ++ ell++ e+++++ 
  CCD22586.1 16 EKPTSKSYSTLLSQLNKDSATSASNgnadvylklkKLEREYELLTLQEDYIKDE 69
                455555666666666666655555555555555554444444444444444443 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 7.6e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerp 40 
                 ++++G++GtGKT+l++ ++++          ++
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVANST---------NA 230
                 689****************997.........33 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.074
      AAA_22  84 qalraravielliiDEaqhlr......s.......eealeeLrsllnl..srkgvqliL 127
                 + +r+ a  +++ iDE++ +       +       +++l eL + ++   ++++v++i+
  CCD22586.1 257 RLARENAP-SIIFIDEVDSIAtkrfdaQtgsdrevQRILIELLTQMDGfdQSTNVKVIM 314
                 44455555.9*********9876555415667666555555555555567788888876 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.7e-07   9.7e-05      24     116 ..     166     272 ..     152     320 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.7e-07
      DUF815  24 evklddLvgidkqkealvente.qfleg........lpannvLLwGarGtGKSslvkallneyaeegLrl..ievekedlkelpklvellr...erper 108
                  v+ +d+ g+d qk+++ e +e  +++g         p + vLL+G  GtGK  lvka+ n+++++ +r+   e  ++ l e p++v+ +    +++  
  CCD22586.1 166 DVTYADVGGLDMQKQEIREAVElPLVQGdlyeqigiDPPRGVLLYGPPGTGKTMLVKAVANSTNAAFIRVngSEFVHKYLGEGPRMVRDVFrlaRENAP 264
                 566677777777777777776523555522222222466789*************************99944588899999999999876422266778 PP

      DUF815 109 filfvDDL 116
                  i+f+D +
  CCD22586.1 265 SIIFIDEV 272
                 89999975 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.2e-06    0.0012      35      96 ..     206     275 ..     180     282 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.2e-06
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvkl.kitsgPvleka.gd...laalltnl...eekdvlfideihrl 96 
                  vllyGpPG Gkt l k +a+  ++ + ++  +  ++k  g+   ++  + +l   ++  ++fide+  +
  CCD22586.1 206 GVLLYGPPGTGKTMLVKAVANSTNAAFiRVNGSEFVHKYlGEgprMVRDVFRLareNAPSIIFIDEVDSI 275
                 59********************998761554444554422221113322223311144468888888765 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   2.1e-06    0.0012      12      45 .]     374     407 ..     364     407 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.1e-06
   AAA_lid_3  12 eGySGADlaalcreAallAlrrgikeitmedfee 45 
                 +  SGA +aa+ +eA+l+A+r ++  i ++d+ee
  CCD22586.1 374 DSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEE 407
                 678*********************9999999986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       3.9   2.2e+03      24      79 ..      42      94 ..      24     106 .. 0.56
   2 !   16.9   0.0   1.3e-05    0.0072       1      67 [.     207     304 ..     207     329 .. 0.70
   3 ?   -1.9   0.0         8   4.5e+03      77     107 ..     379     409 ..     358     410 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.9
      AAA_18 24 f...gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvi 79
                +     +l+++ +e +ll+ ++++ +++++r  +  l +++++++++        +lvi
  CCD22586.1 42 NadvYLKLKKLEREYELLTLQEDY-IKDEQRHLKRELLRAQEEVKRIQ-----SVPLVI 94
                256566777777777777777777.44444444444445555544443.....355555 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.3e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....................gvnlrdvakenglllevdpe..........aldeskrldedkldklldaleen 67 
                 +ll G+pG+GKt l k+++++++                      ++ +  +a+en +++ + +e          a   s+r+++  l +ll+++++ 
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVANSTNAafirvngsefvhkylgegprmVRDVFRLARENAPSIIFIDEvdsiatkrfdAQTGSDREVQRILIELLTQMDGF 304
                 799***************99985568999988888888888888877777777777777777777777777744444444455555555555544444 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 8
      AAA_18  77 lvidghlaeleseaakdikkvvLtaspeell 107
                  vi  +++e    a +++ +v+L+ + ee +
  CCD22586.1 379 AVIAAIMQEAGLRAVRKNRYVILQSDLEEAY 409
                 4788888888888888888899999988865 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       8.2   4.6e+03      93     119 ..     162     187 ..     128     192 .. 0.76
   2 !   17.6   0.0     5e-06    0.0028       2      92 ..     207     301 ..     206     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 8.2
                 HHHH-EEEE---STTGGG-HHHHHHHH CS
    NTPase_1  93 lseadviviDEiGkmElkskkfkeave 119
                 ++++dv   D +G + ++ ++++eave
  CCD22586.1 162 NEKPDVTYAD-VGGLDMQKQEIREAVE 187
                 3566777666.8888888888888886 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 5e-06
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEEE.EEEEE-------EEEEEET.T--EEEEEETT---SSEETTEEE-HHH...HHHHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgGf.yteevreggrrigFkivdlasgeegiLarveakreprvgkyvvdves...feelalealrka 92 
                 v++ GppG+GKt lvk v++  +   ++v+G   ++++  +g r+  ++  la ++   +   ++  ++  +++  ++ s   ++++ +e l+++
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVANSTNAAFIRVNGSeFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSdreVQRILIELLTQM 301
                 6788***************************74688999*************9999998888887887777777777655444666666666665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     7e-06    0.0039       1      68 [.     207     265 ..     207     284 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7e-06
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdeenps 68 
                   ++lyGp+g+GK++l+k            ++++  ++r + ++f+++Y g+   ++ D+ +   e+ ps
    CCD22586.1 207 VLLYGPPGTGKTMLVKA---------VANSTNAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPS 265
                   689**************.........3466688889999*********99999999999888775555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1         5   2.8e+03      16      59 ..      24      69 ..      24     111 .. 0.52
   2 !   16.3   0.0   1.3e-05    0.0075       5      76 ..     207     275 ..     204     318 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 5
      AAA_14 16 Ttllkqlikell...vkkesilyinldderdkkladpekllelilek 59
                +tll ql k++     + +  +y++l++ + +  +  +  +++i+++
  CCD22586.1 24 STLLSQLNKDSAtsaSNGNADVYLKLKKLEREY-ELLTLQEDYIKDE 69
                566666666666555444555666666644432.2221122333333 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.3e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT+l+k ++++       ++ +n  +   k l +  ++ + ++++++e+  +++f+DE+  +
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVANSTN---AAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSI 275
                 7899**************97777...889999988877666554335666666665556899*******988 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   6.6e-06    0.0037      21      80 ..     206     264 ..     178     316 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.6e-06
                 EEEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEEEE..SSEEEEE-TT-SSTHHH CS
        TsaE  21 vilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeYelekeglyHfDlYRledeeel 80 
                  +lL+G+ G+GKT+lv+++a++ + +  +v+      v++Y  e    +  D++Rl++e+  
  CCD22586.1 206 GVLLYGPPGTGKTMLVKAVANSTNAAfiRVNGS--EFVHKYLGEGP-RMVRDVFRLARENAP 264
                 49*********************9995566655..55899966444.555799999765443 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.7e-05     0.026      34      59 ..     205     230 ..     198     243 .. 0.82
   2 ?    0.2   0.0      0.79   4.4e+02     101     121 ..     264     284 ..     253     300 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.7e-05
       AAA_7  34 kpvllvGptGtGKtviikdllkkldk 59 
                 + vll+Gp GtGKt+++k + ++ + 
  CCD22586.1 205 RGVLLYGPPGTGKTMLVKAVANSTNA 230
                 569****************9999884 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.79
       AAA_7 101 klvvFvDDlnmpakekygaqp 121
                   ++F+D+++  a  +++aq+
  CCD22586.1 264 PSIIFIDEVDSIATKRFDAQT 284
                 5799*******9999999996 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     1e-05    0.0058       5      75 ..     207     273 ..     204     305 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1e-05
      AAA_24   5 iliyGpsgiGKTtlakel..gpkplfidtekG.lksldadkfpdieswedfldevvelaaeladyktlviDtid 75 
                 +l+yGp+g+GKT+l+k      +++fi ++++ + + +  ++p      +++d +   +++ +  ++++iD +d
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVanSTNAAFIRVNGSeFVHKYLGEGP-----RMVRDVFRLARENAP--SIIFIDEVD 273
                 79**************999889999998877313344444444.....334444444433333..455555555 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     2e-05     0.011       2      31 ..     207     236 ..     206     241 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 vll g PG++kt+lvka+a++ ++ f r+ 
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVANSTNAAFIRVN 236
                 7999**********************9995 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.2e-05    0.0066      50      91 ..     204     243 ..     152     318 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelgedvpfvalsgsevysl 91 
                  r+vLl Gp+gtGkt l  a++++ +    f+ ++gse+   
  CCD22586.1 204 PRGVLLYGPPGTGKTMLVKAVANSTN--AAFIRVNGSEFVHK 243
                 499*******************9865..89*******98655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-05     0.012       6      49 ..     192     235 ..     188     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-05
      AAA_30   6 QaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrv 49 
                 Q ++ e++  ++ r ++l Gp+GtGKt+++ka+++  +aa  rv
  CCD22586.1 192 QGDLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTNAAFIRV 235
                 66677777777778899****************99888875555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.4e-05     0.014       2      38 ..     207     245 ..     207     317 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.4e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlf 38 
                 vll G+pG+GK+ l++ +++ +   +++++  ++  ++ 
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVANSTNaaFIRVNGSEFVHKYL 245
                 7899***************88887777777666544444 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00078      0.44      32      60 ..     201     229 ..     190     240 .. 0.81
   2 ?    3.3   0.0     0.085        48     107     140 ..     251     284 ..     242     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00078
        TniB  32 rkrmpnlllvGdsnnGKtmivekFarlhp 60 
                  + ++ +ll+G++ +GKtm+v+  a++ +
  CCD22586.1 201 IDPPRGVLLYGPPGTGKTMLVKAVANSTN 229
                 5567899**************99887665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.085
        TniB 107 leqqvlrllrelkvrvLiiDEihnllagsarkqr 140
                 + ++v rl re  + ++ iDE++++ + + ++q 
  CCD22586.1 251 MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 284
                 56788999999**************988877775 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.5e-05     0.019      25      43 ..     207     225 ..     199     239 .. 0.91
   2 ?   -2.4   0.0       4.7   2.6e+03     109     157 ..     266     317 ..     261     321 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.5e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll+GppG+GKtml k+++
    CCD22586.1 207 VLLYGPPGTGKTMLVKAVA 225
                   89************99875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.7
  Mg_chelatase 109 vLfLDElpefkrkvlevLR.ePledgevtisrakakvef..parfqlvaamN 157
                   ++f+DE+  + +k +++   +  e +++ i+  ++   f   +++++++a+N
    CCD22586.1 266 IIFIDEVDSIATKRFDAQTgSDREVQRILIELLTQMDGFdqSTNVKVIMATN 317
                   6788888888777777643134555555555554444441145666777776 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00034      0.19      23      61 ..     205     240 ..     180     247 .. 0.84
   2 ?    1.5   0.0      0.39   2.2e+02      95     143 ..     265     318 ..     256     326 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00034
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfvavncaai 61 
                        vl+ G  GtGK++l +a+ +++   ++ f++vn +++
       CCD22586.1 205 RGVLLYGPPGTGKTMLVKAVANST---NAAFIRVNGSEF 240
                      569***************997655...578999997766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.39
                      SEEEEETGGGS-HH...HHHHHHHHHHHSEEESBTSSS..EEE--EEEEEEESS CS
  Sigma54_activat  95 GtlfLDeigelple...lQekLlrvlqegevervGssk..eikvdvriiaatne 143
                      +++f+De+ ++ ++   +Q+   r +q+  +e + + +   ++++v++i+atn+
       CCD22586.1 265 SIIFIDEVDSIATKrfdAQTGSDREVQRILIELLTQMDgfDQSTNVKVIMATNR 318
                      577888887776532225666666666666666666543357889999999987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00021      0.12       3      22 ..     207     226 ..     205     232 .. 0.88
   2 ?    0.2   0.0       1.1   6.1e+02      67     115 ..     250     300 ..     227     351 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00021
                 EEEEC-TTTCHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklal 22 
                 v+l G++G GKT+L++ +a 
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVAN 226
                 899*************9986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.1
                 SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH............HHHHHCT CS
       NACHT  67 apvsevwavllelperlLlilDglDelvtdlgq...kekqpvrtlLselirk 115
                 + v+ v+ +  e++ ++ + +D +D ++t+         ++v++ L el+++
  CCD22586.1 250 RMVRDVFRLARENAPSIIF-IDEVDSIATKRFDaqtGSDREVQRILIELLTQ 300
                 5555655555555555555.47777666643334453344444444455543 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   6.2e-05     0.034       2      35 ..     207     245 ..     206     284 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.2e-05
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv.pEaareil 35 
                 + + G+++tGKT l++a a+      ++v   E++ ++l
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVANStnaaFIRVNgSEFVHKYL 245
                 6799***************65423334444455554444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00066      0.37      21      44 ..     205     228 ..     194     247 .. 0.83
   2 ?    0.8   0.0       0.7   3.9e+02     116     137 ..     261     289 ..     249     320 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00066
    ATPase_2  21 eiyfiYGpegsGKtaLlkeiienl 44 
                 + +++YGp g GKt L+k +++  
  CCD22586.1 205 RGVLLYGPPGTGKTMLVKAVANST 228
                 55789*************999876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.7
    ATPase_2 116 kgkkiiiiiDelqklidlgln.......g 137
                 +    ii+iDe+  +    ++       +
  CCD22586.1 261 ENAPSIIFIDEVDSIATKRFDaqtgsdrE 289
                 33335777777777764444444443332 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       3.3   1.9e+03     160     186 ..      56      82 ..       9     114 .. 0.50
   2 ?   12.8   0.0   0.00013     0.075      20      43 ..     207     239 ..     177     329 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.3
      AAA_11 160 kskleqerrklkkerkelskeleeaee 186
                  + l+ +++ +k+e++ l++el +a+e
  CCD22586.1  56 YELLTLQEDYIKDEQRHLKRELLRAQE 82 
                 222222223333333333333333333 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00013
      AAA_11  20 tliqGPPGtgKTktivellsqll.........s 43 
                 +l+ GPPGtgKT  + ++ ++ +         +
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVANSTNaafirvngsE 239
                 6999********999999988865555544440 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00013     0.072      47      73 ..     204     230 ..     180     244 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
   IstB_IS21  47 kenivllGpsGvGKshlaialgveavr 73 
                   +++l Gp+G+GK+ l  a++ ++ +
  CCD22586.1 204 PRGVLLYGPPGTGKTMLVKAVANSTNA 230
                 56899*************999987655 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00024      0.14      29      92 ..     179     238 ..     175     242 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
                 -HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSS CS
         MCM  29 hedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgs 92 
                 ++++++a+ l l+ g      +++ +     vll g pgt+K+ l+k+v+ ++ +a ++  +gs
  CCD22586.1 179 KQEIREAVELPLVQGDLY---EQIGIDPPRGVLLYGPPGTGKTMLVKAVA-NSTNAAFIRVNGS 238
                 678999999999999884...3455777778******************9.5666667766665 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00067      0.37      12      33 ..     206     227 ..     200     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00067
      AAA_19  12 vllvtaGpGtGKTrvlkhival 33 
                  +l+ ++pGtGKT ++k++ + 
  CCD22586.1 206 GVLLYGPPGTGKTMLVKAVANS 227
                 5899**********99988765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.2   3.5e+03     108     147 ..      52      94 ..      34      94 .. 0.65
   2 ?   10.0   0.1   0.00086      0.48      36      53 ..     207     224 ..     204     230 .. 0.86
   3 ?   -0.6   0.0       1.5   8.5e+02     130     168 ..     252     293 ..     233     316 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.2
      AAA_25 108 lagv.eslpLfak.drggtl.ltadvdaleaaieevegvrlvv 147
                 l+++ e l+L ++ ++++++ l++++ + +++++++  v lv+
  CCD22586.1  52 LEREyELLTLQEDyIKDEQRhLKRELLRAQEEVKRIQSVPLVI 94 
                 4445455555544356666667777778888888888888876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00086
      AAA_25  36 allaGapgtGKttlaldl 53 
                 +ll+G+pgtGKt+l+  +
  CCD22586.1 207 VLLYGPPGTGKTMLVKAV 224
                 69***********98665 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.5
      AAA_25 130 vdaleaaieevegvrlvviDplsralgg....densnsdvgal 168
                 v+++ + ++e + +  + iD ++++       +  s+++v+++
  CCD22586.1 252 VRDVFRLARE-NAPSIIFIDEVDSIATKrfdaQTGSDREVQRI 293
                 5677788888.66999999999996655463333344445333 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.9    0.0055       3.1      61     191 ..      20     150 ..      10     159 .. 0.80
   2 ?    1.4   0.0      0.29   1.6e+02      22      43 ..     207     228 ..     198     241 .. 0.79
   3 ?   -0.7   0.0       1.3   7.4e+02     123     157 ..     257     293 ..     245     320 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0055
                 HHHHHHHHHHHHTXXHHHHHHTTSX.HHHHHHHHHHHHHHHHSEEEEEEXSSXCHHHHHHHHHHHHHHTTEEEEEEEEGGGTBTSCSSSCCCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  61 eqlvqRllsseaeidskklrtgklk.eedweklteaieelseaklfiddtpaltvseirskarrlkkekglgliviDyLqlmegseekenreqevseis 158
                 ++  + lls+  + +++++ +g+ +   +++kl+++ e l+ ++ +i+d+++   +e+     ++k+ +++ l++  +L+ +++++   + ++ +s + 
  CCD22586.1  20 SKSYSTLLSQLNKDSATSASNGNADvYLKLKKLEREYELLTLQEDYIKDEQRHLKRELLRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVV 118
                 555566677777777777777877666689999****************998888888777778888899*************87546688999***** PP

                 HHHHHHHHHCTSXEEEEEEXSGGGCCSCCHSXX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C 159 rsLkalakelnvpvialsqLsravesredkrPv 191
                 r L +l +el  p + ++ L r+ ++  d  P 
  CCD22586.1 119 RILSTLDRELLKPSMSVA-LHRHSNALVDILPP 150
                 **********99988776.77777666666555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.29
                 EEEEEXTTSSHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  22 iiiAarpsmGktalalniaena 43 
                 +++ + p++Gkt+l+  +a+++
  CCD22586.1 207 VLLYGPPGTGKTMLVKAVANST 228
                 567789*********9999764 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.3
                 HHHHHTTEEEEEEEEGGGTBTSCS..SSCCCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx RF
      DnaB_C 123 rlkkekglgliviDyLqlmegsee..kenreqevsei 157
                 rl++e+  ++i+iD ++ + +++   ++   +ev +i
  CCD22586.1 257 RLARENAPSIIFIDEVDSIATKRFdaQTGSDREVQRI 293
                 5666677777777777777644212222333344333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 3093.10
//
Query:       CCD22587.1  [L=465]
Description: hypothetical protein NDAI_0A04300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-87  290.1  23.4    4.8e-86  287.6  11.8    2.3  2  She9_MDM33     She9 / Mdm33 family
  ------ inclusion threshold ------
      0.012   15.6   1.2      0.012   15.6   1.2    2.0  2  zf-RING_9      Putative zinc-RING and/or ribbon
       0.38   10.9   3.0       0.76    9.9   0.8    2.7  2  Erf4           Golgin subfamily A member 7/ERF4 family
        1.4    8.6   7.6       0.21   11.3   2.8    1.9  2  Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 
        6.2    6.1  13.4       0.41    9.9   0.1    3.7  4  PhoU_div       Protein of unknown function DUF47


Domain annotation for each model (and alignments):
>> She9_MDM33  She9 / Mdm33 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   3.7   0.00056         2      15      69 ..      74     127 ..      43     141 .. 0.86
   2 !  287.6  11.8   1.3e-89   4.8e-86       1     195 [.     142     336 ..     142     339 .. 0.99

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00056
  She9_MDM33  15 tlltaskalndvtGYseieklkksieeleeeleeakeevreakeayeeaiekrsk 69 
                 ++ +++k++ d + Y +i+++kksi++ +e+++++ +e ++ + +y+e +++++k
  CCD22587.1  74 SFKKMTKSFRDQSKY-HIDNMKKSIRQANEKIAAQEKEQQDSRLNYNEDVNTHEK 127
                 566788888888888.5******************************99988765 PP

  == domain 2  score: 287.6 bits;  conditional E-value: 1.3e-89
  She9_MDM33   1 lskkleelldslqetlltaskalndvtGYseieklkksieeleeeleeakeevreakeayeeaiekrsksqrevneLLqRkssWspedlerftelyrkd 99 
                 +s+kle++ldslqetl+ta++alndvtGYs+i+kl++si  +e++l++ k+ev+ +k++y++aie+r++sq+e+neLLqRk+sWsp+dlerft+ly++d
  CCD22587.1 142 WSRKLEFYLDSLQETLFTATRALNDVTGYSSIQKLRNSILIMEQKLDTIKKEVKVCKSEYADAIERRTQSQKELNELLQRKTSWSPTDLERFTQLYKDD 240
                 789************************************************************************************************ PP

  She9_MDM33 100 hanekeeeeakeklkeaeakeeelseeLtksiLtRYHEEqiWSDkiRraStwgtlvlmgvNvllfvvlqllvEPwkRrrLvesfeekvkealeevk 195
                 ++n+k+e+++kek+k++e kee+l+eeL+++iLtRYHEEqiWSDkiRr+Stwgt++lmg+N++lf++lqll+EPwkRrrL++sfe+kvk al++++
  CCD22587.1 241 SSNSKRESKLKEKVKDIELKEEQLNEELYRAILTRYHEEQIWSDKIRRTSTWGTFLLMGMNIFLFLILQLLLEPWKRRRLTRSFEDKVKIALDKYS 336
                 *******************************************************************************************99987 PP

>> zf-RING_9  Putative zinc-RING and/or ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4      0.51   1.8e+03      33      74 ..      68     108 ..      53     128 .. 0.59
   2 ?   15.6   1.2   3.4e-06     0.012      32     126 ..     137     234 ..     129     258 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.51
   zf-RING_9  33 kkykvskaakellesieekplleleelnpelykkvkelkkvk 74 
                 +k k+s++ k++ +s++++  ++++++++++ + ++++++ +
  CCD22587.1  68 TKLKLSSF-KKMTKSFRDQSKYHIDNMKKSIRQANEKIAAQE 108
                 44444443.334455666666666666666665555544433 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 3.4e-06
   zf-RING_9  32 fkkykvskaakellesieekplleleelnpel.ykkvkelk.kvkelrkqlkllkeylktCrsaeaekllkllklr.erehlledsdlyslkdLvevk 126
                 ++++k s++ + +l+s++e+ ++  ++ln  + y+++++l+ ++  + ++l ++k+ +k+C+s+ a+ +++ ++++ e + ll+++  +s +dL + +
  CCD22587.1 137 LNRKKWSRKLEFYLDSLQETLFTATRALNDVTgYSSIQKLRnSILIMEQKLDTIKKEVKVCKSEYADAIERRTQSQkELNELLQRKTSWSPTDLERFT 234
                 6677889999999999999999999999975438888887615788999***************88888887777646688*************8764 PP

>> Erf4  Golgin subfamily A member 7/ERF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.8   0.00021      0.76      43     100 ..      51     108 ..       1     118 [. 0.85
   2 ?   -1.3   0.0      0.63   2.3e+03      76      97 ..     248     269 ..     212     283 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00021
        Erf4  43 eilaeafspysvrnildnvlglltlylwslvlkthykkklkklekyieelNeel.fker 100
                 +il+++ + ++ +++l++ l+l ++  +++ ++ + k ++ +++k i ++Ne++   ++
  CCD22587.1  51 KILESKKKLINEQKWLETKLKLSSFKKMTKSFRDQSKYHIDNMKKSIRQANEKIaA-QE 108
                 5788999999*******************************************952.33 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.63
        Erf4  76 thykkklkklekyieelNeelf 97 
                 ++ k+k+k++e   e+lNeel+
  CCD22587.1 248 SKLKEKVKDIELKEEQLNEELY 269
                 4556666666666677777764 PP

>> Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.8   5.9e-05      0.21      99     164 ..      60     125 ..      53     125 .. 0.84
   2 ?   -1.5   0.2      0.49   1.8e+03     109     151 ..     182     223 ..     163     258 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.9e-05
                    HH..STS--.-TTSHHHHHHHHHTTS-HHHHHHHHHT-HHHHHHHTTSC..---SSTHH...HHS--EE CS
  Peptidase_C12  99 lNlekeaeeielgseLkkfkeftkelspeergealenseeireahnsfasegqteapee...eedvafH 164
                    +N   e++ +e + +L++fk+ tk++  +++ ++ + +++ir+a +++a++++++++++   +edv++H
     CCD22587.1  60 IN---EQKWLETKLKLSSFKKMTKSFRDQSKYHIDNMKKSIRQANEKIAAQEKEQQDSRlnyNEDVNTH 125
                    45...2355688899***********99999999999999*********98877776668888888888 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.49
                    -TTSHHHHHHHHHTTS-HHHHHHHHHT-HHHHHHHTTSC..-- CS
  Peptidase_C12 109 elgseLkkfkeftkelspeergealenseeireahnsfasegq 151
                     ++++L+++k+++k   + e ++a+e+ ++ ++  n++ ++++
     CCD22587.1 182 IMEQKLDTIKKEVKVC-KSEYADAIERRTQSQKELNELLQRKT 223
                    5667777777777666.55667777777777776666664443 PP

>> PhoU_div  Protein of unknown function DUF47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       0.2   7.3e+02     105     158 ..      77     126 ..      50     145 .. 0.63
   2 ?    9.9   0.1   0.00011      0.41      16      64 ..     149     195 ..     134     199 .. 0.84
   3 ?    0.4   0.3     0.096   3.5e+02     143     175 ..     243     275 ..     208     288 .. 0.58
   4 ?    2.5   0.5     0.022        79     141     179 ..     337     375 ..     323     380 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.2
    PhoU_div 105 kvefpeelkdeflallkktveaiealaevieeleklletalskkdiveeieslE 158
                 k  + ++++d+    ++ + ++i++++e i + ek  e+  s  ++ e ++  E
  CCD22587.1  77 K--MTKSFRDQSKYHIDNMKKSIRQANEKIAAQEK--EQQDSRLNYNEDVNTHE 126
                 3..57777777777777778888888877777776..33222224444444444 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00011
    PhoU_div  16 hlekvsetvlkliellkallegdyekveellkeiselEreADeikreir 64 
                  l  + et   +  +l+++    y+++ +l++ i  +E++ D ik+e++
  CCD22587.1 149 YLDSLQETLFTATRALNDVTG--YSSIQKLRNSILIMEQKLDTIKKEVK 195
                 566677788888888888887..************************97 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.096
    PhoU_div 143 talskkdiveeieslEdeiDqlqrklikklfsr 175
                 ++ +++++ e+++++E +  ql+++l+   ++r
  CCD22587.1 243 NSKRESKLKEKVKDIELKEEQLNEELYRAILTR 275
                 333333455556666666666666666555554 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.022
    PhoU_div 141 letalskkdiveeieslEdeiDqlqrklikklfsredas 179
                 le  l+  ++++e  ++  ++D++++ ++ +l ++++ s
  CCD22587.1 337 LEHNLKLAEMISENANIKARSDDIKKGILAELEEEDSTS 375
                 78888989*********************9998866544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2393  (0.133471); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 3088.84
//
Query:       CCD22588.1  [L=274]
Description: hypothetical protein NDAI_0A04310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-06   26.0   0.0    1.5e-05   25.0   0.0    1.5  1  KH_8      Krr1 KH1 domain
  ------ inclusion threshold ------
       0.13   12.2   0.3       0.35   10.7   0.3    1.8  1  KH_1      KH domain


Domain annotation for each model (and alignments):
>> KH_8  Krr1 KH1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.7e-09   1.5e-05       4      75 ..      98     171 ..      96     176 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.7e-09
        KH_8   4 evlfpkyrekylkeveekikkll.eekklklevdlkerslkvsTt.ekTrDPyiilkardlikLisrgvpleea 75 
                 +++ p +r + l+++++ki   l ++ kl+++++lk +s++++T  ++T DP  + k+ d+ik  + g +l+ +
  CCD22588.1  98 KIAVPPHRMTPLRNSWTKIYPPLvDHLKLQVRMNLKTKSVELRTHpKHTTDPGALQKGADFIKAFTLGFDLDDS 171
                 578899*************98775889*****************8467***************98888877765 PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   3.9e-05      0.35       9      62 ..     200     245 ..     197     249 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.9e-05
                 GHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEESHHHHHHHHH CS
        KH_1   9 slvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisGspeavekAke 62 
                 + +gri Gk G++   I++ t ++I++         ++ ++i G    +  A+e
  CCD22588.1 200 RAIGRIAGKDGKTKFAIENATRTRIVLA--------DTKIHILGGFTHIRMARE 245
                 679****************9******65........356888775555777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2120.57
//
Query:       CCD22589.1  [L=335]
Description: hypothetical protein NDAI_0A04320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-37  127.1   0.2    1.7e-36  124.1   0.1    2.3  2  TFIID-18kDa      Transcription initiation factor IID, 18kD su


Domain annotation for each model (and alignments):
>> TFIID-18kDa  Transcription initiation factor IID, 18kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   0.1   9.7e-41   1.7e-36       2      93 .]       7      97 ..       6      97 .. 0.98
   2 ?    0.2   0.0     0.045     8e+02      19      51 ..     225     257 ..     222     269 .. 0.84

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 9.7e-41
                 --CCCCHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC-XXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIID-18kDa  2 lfrkelqsmlyalGdvkePlqetvqlledlvrgyliellqqaakvaklrgsrkitlEDllfliRkDkkKlnRlkellslkellkkakKqfde 93
                 ++r+e+q+m++++G+ ++P+ et++l+ed+vrg++ie+l qa+k+a+ rgs++i +ED++fliR+Dk+K+nRl+++ls+k+l+ k++K++d+
   CCD22589.1  7 KYRVEIQQMMFVSGETNDPPPETTSLIEDIVRGQVIEILLQANKTAHSRGSKSILPEDVIFLIRHDKAKVNRLRTYLSWKDLR-KNAKDQDA 97
                 79*********************************************************************************.99999985 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.045
                  S--HHHHHHHHHHHHHHHHHHHHHHHC-XXXX. CS
  TFIID-18kDa  19 ePlqetvqlledlvrgyliellqqaakvaklrg 51 
                  +P ++ +++l  l  + +  l++ a k+ k+++
   CCD22589.1 225 KPHDDVIDILGFLTFEIVCSLTEAASKIKKREQ 257
                  688899999999999999999999999998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1158  (0.0645881); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2529.36
//
Query:       CCD22590.1  [L=632]
Description: hypothetical protein NDAI_0A04330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-69  233.5   0.0    2.9e-69  233.1   0.0    1.1  1  ThiF             ThiF family
    1.8e-06   28.0   9.7    6.2e-05   23.0   0.5    2.6  3  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
      8e-05   22.6   0.0    0.00023   21.1   0.0    1.8  1  Tfb5             Transcription factor TFIIH complex subunit T
  ------ inclusion threshold ------
      0.086   12.9   0.0       0.22   11.6   0.0    1.6  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
       0.13   12.8   0.0        0.6   10.6   0.0    2.1  2  NAD_binding_7    Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.1   0.0   8.2e-73   2.9e-69       7     242 ..      10     440 ..       2     442 .. 0.93

  Alignments for each domain:
  == domain 1  score: 233.1 bits;  conditional E-value: 8.2e-73
                 HHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCG.CCS-H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
        ThiF   7 llgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritd.etvle 104
                 ++g+++++kLr++k+llvGaGg+Gsellk+L+l+ +g++++vD D+i+lsNlnRqflfr+ di++pK+++a +a+q++ +  ++++++++i+d +++  
  CCD22590.1  10 IVGQESYDKLRSTKCLLVGAGGIGSELLKDLILMEFGEIHIVDLDTIDLSNLNRQFLFRQRDIKQPKSTTAVKAVQHFSN-SKLVPYQGNIMDtNEFPL 107
                 36779***********************************************************************9988.5***********555999 PP

                 HHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH....................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................... RF
        ThiF 105 ellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct....................... 180
                 ++++++D++++alDn++arr+vn++ ++ ++pl+e+gt+gf+g++++iipgkt+c++C+     +++t+k++p+ct                       
  CCD22590.1 108 HWFHQFDIIFNALDNLSARRYVNKMSQFLQTPLLESGTSGFDGYIQPIIPGKTECFDCT-----KKETPKTFPVCTirstpsqpihcivwaknflfnqi 201
                 ***********************************************************.....58********************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  CCD22590.1 202 fsaestsneeeedgtkewgtddveeikrikqetnelhelqkiitfgdksripeiveklfihdieklllienlwktrtkptpltktqldasmneskkdlh 300
                 *************************************************************************************************** PP

                 ....................................................................HHHCT.E-B-HHHHHHHHHHHHHHHHHHH.. CS
                 ....................................................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxx.. RF
        ThiF 181 ....................................................................siagn.ipaiatttavvaglaalellkll.. 208
                                                                                     +iagn ipaiatt+a++agl al  l++l  
  CCD22590.1 301 lnnnsvwnineqlsmflsitgklmermkkehtiefdkddqdtlefvataanirshifdiplqsvfdikQIAGNiIPAIATTNAIIAGLSALVSLRVLnl 399
                 *************************************************************************************************99 PP

                 .......TTBCGGGCCEEEECCTTTTEEEEECCEEEEEEC- CS
                 .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 209 .......sgkeklenslltqvdllesrfenvelerakkskc 242
                           + +++ + +  +l + r+ + +  + ++++c
  CCD22590.1 400 lkyapvkTPLDLNMAMTAKASNLSQDRYISNPTLARPNCEC 440
                 99888632223333334445555555666666666666666 PP

>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.5   9.5e-05      0.34       1      59 [.     183     244 ..     183     270 .. 0.52
   2 !   23.0   0.5   1.7e-08   6.2e-05     169     252 .]     284     368 ..     263     368 .. 0.62
   3 ?   -3.5   0.1       2.1   7.6e+03     161     184 ..     555     586 ..     540     619 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.5e-05
  UBA_e1_thiolCys   1 PneieHtieWArd.kFeglFekkpeevnkfl.......kdkekfleelekekeeekletlekvlkll 59 
                      P++  H+i WA++  F+++F+ +  + ++             + +ee+++ k+e  ++ l++++k++
       CCD22590.1 183 PSQPIHCIVWAKNfLFNQIFSAESTSNEEEEdgtkewgT---DDVEEIKRIKQE--TNELHELQKII 244
                      8999********989*****9988776665533332221...112222221111..22233333333 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 1.7e-08
  UBA_e1_thiolCys 169 vkiavsdeeakeeeeeeedeeeleelaeeleklakkessla...lklkpieFeKDddtnfhidfitaasNlRArnYkIkeadrlkvK 252
                       k++ + + ++++++ + +++++ ++ e+l+ + + + +l     k + ieF+KDd++   ++f++ a+N+R+  ++I+  + +++K
       CCD22590.1 284 TKTQLDASMNESKKDLHLNNNSVWNINEQLSMFLSITGKLMermKKEHTIEFDKDDQD--TLEFVATAANIRSHIFDIPLQSVFDIK 368
                      3333222222222221233445555555555544444444444467799*******99..79****************988877665 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.1
  UBA_e1_thiolCys 161 pefkpkekvkiavsdeeakeeee.........e 184
                        +kp+++   +++++e+++++e          
       CCD22590.1 555 TWIKPSSAEP-EENEAERETSKEkvggndgavI 586
                      4455555333.3344444333332333333330 PP

>> Tfb5  Transcription factor TFIIH complex subunit Tfb5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   6.5e-08   0.00023       3      63 ..     445     508 ..     443     510 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 6.5e-08
        Tfb5   3 kaikGvLveCDpai..kqlilkldeqep.sqkfiiedLDethlfvkeevveelkkeleellekn 63 
                 k+++Gv + +Dp+i  k++i +l ++   s+++ + dL e++l+v+ +  +++ + l+++  kn
  CCD22590.1 445 KVTRGVVIVSDPTItlKEFIAELRSKYGfSEDISLLDLSEQRLLVDYDFDDMVDRSLDDVNLKN 508
                 89**********87669*********99*****************************9987665 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.2e-05      0.22       4      43 ..      13      52 ..      11      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.2e-05
                  HHHHS..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEE CS
  Shikimate_DH  4 kkkleslkekkvlliGaGemaelvakhLlakgvkkvvvaN 43
                  ++  ++l++ k ll+GaG ++++++k L+  ++ ++ ++ 
    CCD22590.1 13 QESYDKLRSTKCLLVGAGGIGSELLKDLILMEFGEIHIVD 52
                  5677899**************************9999986 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00017       0.6       4      82 ..      18     133 ..      16     141 .. 0.65
   2 ?   -2.5   0.0       1.9   6.9e+03      31      73 ..     552     592 ..     543     596 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
  NAD_binding_7   4 dlkgkkvlvvGgGevAarkvrklleag.akvtvvapevkeele..............................elvklaeee............le 56 
                    +l+  k+l+vG+G ++ + ++ l+  +  ++++v+ ++ + ++                              +                    ++
     CCD22590.1  18 KLRSTKCLLVGAGGIGSELLKDLILMEfGEIHIVDLDTIDLSNlnrqflfrqrdikqpksttavkavqhfsnsK-------LvpyqgnimdtneFP 106
                    68899****************999876589*******6333335555555555555555554444443333332.......033333333333365 PP

  NAD_binding_7  57 .kdlegadlviaatddrelneriaeaa 82 
                     +++ ++d+++ a d+ + ++ + ++ 
     CCD22590.1 107 lHWFHQFDIIFNALDNLSARRYVNKMS 133
                    577999999999999988887776665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
  NAD_binding_7  31 akvtvvapevkeeleelvklaeeelekdlegadlviaatddre 73 
                     ++t + p +  + +e  ++++e+ ++++ g d ++++ dd+e
     CCD22590.1 552 LDITWIKPSS--AEPEENEAERETSKEKVGGNDGAVIILDDDE 592
                    5777888883..3334456777777888888887777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 4946.63
//
Query:       CCD22591.1  [L=684]
Description: hypothetical protein NDAI_0A04340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-31  108.0   0.1    1.1e-19   70.8   0.0    3.2  3  RhoGAP      RhoGAP domain
  ------ inclusion threshold ------
        4.6    7.7  10.3       0.32   11.4   4.4    2.2  2  Syntaxin_2  Syntaxin-like protein
        9.5    6.0  11.2       0.48   10.2   4.2    2.3  2  RR_TM4-6    Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   1.9e-23   1.1e-19       1      83 [.     136     221 ..     136     262 .. 0.88
   2 !   32.8   0.0   9.2e-12   5.5e-08      89     149 ..     325     385 ..     295     388 .. 0.84
   3 ?   -0.2   0.0      0.14   8.1e+02     114     133 ..     409     428 ..     405     433 .. 0.89

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 1.9e-23
                 BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCT...TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHH CS
      RhoGAP   1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavds...dleeedvhavaslLKrfLrelpepLltkelyeeliea 83 
                 Pi+v+k  +++++++l+t+gi+R+ g+ +rvkel+  f++ ++      d++ ++vh+vaslL+rfL++l+epL++ +lyee+ + 
  CCD22591.1 136 PIVVAKSGAYLKANALETKGIFRIAGNGKRVKELQFIFSSPPDYGTkfnDWDGYTVHDVASLLRRFLNNLEEPLIPLSLYEEFRAP 221
                 99*****************************************999999**********************************942 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 9.2e-12
                 HHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT-TSS CS
      RhoGAP  89 eeerlealkellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrpkse 149
                  +  ++ +++l+ kL++   ++  yLl++L+ +a++s+ n M+ +nLa +f+P++l+++ +
  CCD22591.1 325 IRAAIKDYESLFTKLSNDSKQLTIYLLDLLSLFARQSQFNLMSGRNLAAIFQPSILSHPRH 385
                 3344999*************************************************99875 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.14
                 HHHHHHHHHHTHHHH---HH CS
      RhoGAP 114 LlehLkrvaenskenkMtak 133
                 Ll hL ++a+ +++nk+++k
  CCD22591.1 409 LLPHLLKLAKEEQQNKLSPK 428
                 889*************9986 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.4   5.3e-05      0.32      36      99 ..     265     345 ..     233     347 .. 0.78
   2 ?   -2.8   0.3       1.4   8.6e+03      50      63 ..     488     501 ..     458     515 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.3e-05
  Syntaxin_2  36 helieeinelikktnellkklsqldnsssds................qqkl.qkekLkkdfkealqeFqkiqrqyaekekq 99 
                   +ie+++e i + ++++++ ++ d +++d                 ++k+  k +L++d+++a++ ++++  + ++ +kq
  CCD22591.1 265 PANIEKTTEAIGAEKNDVSQSNEQDTKGNDGdeekeegepdiseekrKRKIrHKKRLTRDIRAAIKDYESLFTKLSNDSKQ 345
                 456788888888888888888888888877788888888*******977777999****************9999988877 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.4
  Syntaxin_2  50 nellkklsqldnss 63 
                 +++ +++ +++ns+
  CCD22591.1 488 SQNTNRIPKITNSN 501
                 33334444444444 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.2     8e-05      0.48      90     180 ..     255     359 ..     220     365 .. 0.49
   2 ?   -1.9   0.6      0.41   2.4e+03      55      86 ..     419     450 ..     409     518 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8e-05
                 XXXXXXXXXXXX.XXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXX-HH.............HHHHHHHHH CS
    RR_TM4-6  90 laeeeeaeeeke.eeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskkkeeaeaeesellk.............klevyqtkl 174
                 + e++ + +e +  e+++ea   ek+d +++++++ + +  +eeke+ e + +++k+k++ ++kk  +++  +++++             +l +y   l
  CCD22591.1 255 EGEKQLSTDEPAnIEKTTEAIGAEKNDVSQSNEQDTKGNDGDEEKEEGEPDISEEKRKRKIRHKKRLTRDIRAAIKDyeslftklsndskQLTIYLLDL 353
                 222222222222022233333334444444444444433333333333333333333333333333333333333334455556777777999999999 PP

                 HHHHHH CS
    RR_TM4-6 175 lnylAR 180
                 l+++AR
  CCD22591.1 354 LSLFAR 359
                 999999 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.41
                 XXXXXX...XXXXXXXXXXXXXXXXXXXXXXX CS
    RR_TM4-6  55 eggqykvvakkseagLgDlseteaeesptpel 86 
                 e++q k+ +k ++   +D  +++   +++p++
  CCD22591.1 419 EEQQNKLSPKTATITTTDENNSTEVLKKSPSK 450
                 33333333333332222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1147  (0.0639746); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4692.35
//
Query:       CCD22592.1  [L=459]
Description: hypothetical protein NDAI_0A04350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-65  220.8   6.8    2.5e-65  220.5   6.8    1.1  1  BAR       BAR domain
    6.5e-15   54.5   0.1    1.1e-14   53.7   0.1    1.4  1  SH3_1     SH3 domain
    2.2e-12   46.6   0.1    3.7e-12   45.9   0.1    1.4  1  SH3_9     Variant SH3 domain
    1.9e-07   30.6   0.0    3.5e-07   29.8   0.0    1.4  1  SH3_2     Variant SH3 domain
  ------ inclusion threshold ------
      0.064   13.5   0.9       0.15   12.3   0.9    1.5  1  DUF755    Domain of unknown function (DUF755)
        8.9    6.6   8.8        1.7    8.9   0.5    2.3  2  Mis14     Kinetochore protein Mis14 like


Domain annotation for each model (and alignments):
>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.5   6.8   8.4e-69   2.5e-65       1     238 [.       6     246 ..       6     247 .. 0.98

  Alignments for each domain:
  == domain 1  score: 220.5 bits;  conditional E-value: 8.4e-69
         BAR   1 lkKafnRasqlleekvgkaekTkLDedFeelerrldvteklieklvkelkeylqanpgarakqivleklkeqplelLaesmieagkelgedss..fg.. 95 
                 ++Ka++Ra+q++++k++++e+T  D+++e++err++++e++++kl +e+k+y+ a+ g++++qi            +a++m+e++k++++++s  ++  
  CCD22592.1   6 FTKAISRAPQSFRQKFKMGEQTV-DPVYEDAERRFKELEDETKKLSEESKRYSAAVTGMLTHQI-----------GFAKAMEEIFKPISGKMSdpNAtv 92 
                 79*********************.****************************************...........******************65559* PP

         BAR  96 ........kalekygeavkklaqteeelekrvetnfldplrellekefkeiqkerkklehkrlDyDaakarlkklktkkskkakde...ekaeeelrkA 183
                         +a+e+y+ +v +l++t+++    ve+++++p++ell k++++i+k+++k++hk+lD+D+  ++++k ++kk+ +akde   +kae+e+ +A
  CCD22592.1  93 pednpdgiEASEQYRTVVAELQETLKPDLLLVEEKIIKPCQELL-KIITYIRKMATKRNHKKLDLDRRLNTYNKYEKKKEPNAKDEermYKAEAEMTVA 190
                 ********************************************.****************************************************** PP

         BAR 184 qqkfeesneelkaeLpnllalevefv.nqlqafveaqldfhkqaaqlleqlqqqls 238
                 qq+++++ne+lk++Lp l+ le++fv + +++f+++ql+++++++++ +++++ ++
  CCD22592.1 191 QQEYDYYNEMLKTQLPILFGLEAQFVqPLFVSFYYMQLNIFYTLYNRFQDMKIPYF 246
                 ****************************************************9987 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.1   3.7e-18   1.1e-14       1      47 [.     404     450 ..     404     451 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 3.7e-18
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSS..SEEEEEETTSTEEEEEE CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksed..gWwkgrlkgtgkeGliP 47 
                 +AlYDY+a+ +++Lsf  G vi+++e++ d  +Ww+g+++  g++G +P
  CCD22592.1 404 TALYDYQAQAAGDLSFPAGAVIEIVERTSDanEWWTGKYN--GQQGVFP 450
                 59**************************************..69***** PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.1   1.2e-15   3.7e-12       1      49 []     405     455 ..     405     455 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 1.2e-15
       SH3_9   1 AlypyepreddeLsLqrGDvitvieese..dgWlegsltGrtGlvPanyve 49 
                 Aly+y+++ +  Ls+++G vi + e+++  + W+ g+++G+ G++P nyv+
  CCD22592.1 405 ALYDYQAQAAGDLSFPAGAVIEIVERTSdaNEWWTGKYNGQQGVFPGNYVQ 455
                 8***********************885435********************7 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.2e-10   3.5e-07       5      56 ..     406     456 ..     403     457 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.2e-10
                 SS-B-SCGCCB--B-TTEEEEEE..EEEECT..TEEEEEECCCEEEEEGCGEEE CS
       SH3_2   5 iedyvgedkseLsfkkGdvikvlslgskdsd..gwwegevgGrvGlfPsslvee 56 
                 + dy ++  + Lsf +G vi ++   ++ sd  +ww g ++G++G+fP ++v++
  CCD22592.1 406 LYDYQAQAAGDLSFPAGAVIEIV---ERTSDanEWWTGKYNGQQGVFPGNYVQV 456
                 56999999***************...7777777*******************97 PP

>> DUF755  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.9     5e-05      0.15      38      92 ..     122     176 ..      98     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5e-05
      DUF755  38 alLqkqLlkEcqktsqLiqlsqqlqqkkqkkrkeqkkssqthkkkkkksrnvssr 92 
                  l ++++ k cq   ++i+ + ++++k ++k+ + ++ ++t++k +kk++  ++ 
  CCD22592.1 122 LLVEEKIIKPCQELLKIITYIRKMATKRNHKKLDLDRRLNTYNKYEKKKEPNAKD 176
                 56789999***************************************99875554 PP

>> Mis14  Kinetochore protein Mis14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.5   0.00058       1.7      43     130 ..      36     116 ..      11     118 .. 0.69
   2 ?    1.1   2.4      0.15   4.4e+02      81     120 ..     155     194 ..     140     203 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00058
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCT--HHHHH--..------SSSHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Mis14  43 rslyqelEdltvevAqlRreaPrkiaeayakelkaeleeldeyleainelekqekkdpeeddededekerleelvkqyeeslkslkel 130
                 +  ++elEd+t ++++  + + + ++ + ++++       ++++e++++++    k+ ++ ++  ++ +   e ++qy +++ +l+e+
  CCD22592.1  36 ERRFKELEDETKKLSEESKRYSAAVTGMLTHQI----GFAKAMEEIFKPISG---KMSDPNATVPEDNPDGIEASEQYRTVVAELQET 116
                 444567799999999999877655555555555....555555558888888...888888888888888888888888888887765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.15
                 HHHCT--HHHHH--..------SSSHHHHHHHHHHHHHHH CS
       Mis14  81 eldeyleainelekqekkdpeeddededekerleelvkqy 120
                 +ld  l+++n+ ek++++++++++++ +  + ++  +++y
  CCD22592.1 155 DLDRRLNTYNKYEKKKEPNAKDEERMYKAEAEMTVAQQEY 194
                 2334456777888888888888888888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1242  (0.0692732); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3536.24
//
Query:       CCD22593.1  [L=544]
Description: hypothetical protein NDAI_0A04360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-98  328.3  25.4    6.5e-53  180.2   6.8    2.0  2  Sugar_tr         Sugar (and other) transporter
    3.1e-33  115.2  39.4    6.7e-29  100.9  18.6    2.2  2  MFS_1            Major Facilitator Superfamily
     0.0088   15.5   3.5     0.0088   15.5   3.5    2.6  3  GPI2             Phosphatidylinositol N-acetylglucosaminyltra
  ------ inclusion threshold ------
      0.076   13.6   8.4       0.12   12.9   2.6    3.2  3  Phage_holin_3_2  Phage holin family 2


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   6.8   1.5e-56   6.5e-53       6     216 ..      47     245 ..      42     259 .. 0.91
   2 !  154.2  10.6   1.1e-48   5.1e-45     242     452 .]     329     530 ..     305     530 .. 0.91

  Alignments for each domain:
  == domain 1  score: 180.2 bits;  conditional E-value: 1.5e-56
                 HHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TG CS
    Sugar_tr   6 alggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvev 104
                 ++ggllfgYdtgvi+++l  lk   +     s ++ +       +i+si+++G+++Gs++a +l+dr GR+ +l+i++++f+i+++ +a++    s+  
  CCD22593.1  47 TVGGLLFGYDTGVISGVLLNLK--PEDLSRPSLTDFN-----REIITSITSIGSFLGSIIAFPLADRCGRRITLAICCMVFIISGIWMALSR---SLLF 135
                 6899*************99998..3333444444444.....47************************************************...9*** PP

                 GGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT- CS
    Sugar_tr 105 livgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylvekgk 203
                 l+vgR++vGi+vG+a  ++P+y+sEi+p+++Rg++ +l+ +ait G+l++++f ++l + s+   wr+l+g++++pa++++ ll f+PESPr+lv++gk
  CCD22593.1 136 LVVGRLIVGIAVGVAAQCTPIYLSEISPANVRGFMLTLNSVAITGGQLLSYMFAFVLRDLSQ--SWRYLFGISAIPAIMFISLLDFIPESPRWLVTRGK 232
                 *********************************************************88888..7********************************** PP

                 HHHHHHHHHHHHH CS
    Sugar_tr 204 eeeakevlaklrg 216
                   ea   l+ +  
  CCD22593.1 233 FPEAHSALKMIYP 245
                 *****99998655 PP

  == domain 2  score: 154.2 bits;  conditional E-value: 1.1e-48
                 HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHH CS
    Sugar_tr 242 wkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivall 340
                 + ++  +   +++l++g+ l++fqq+tG na+myysp if++l ++++ll  i+v ++nf++tfva+  v+r+G+R +ll  +++m+i +++ +  + +
  CCD22593.1 329 VHKMEAR--TKRALMVGCTLMFFQQVTGFNAFMYYSPIIFSKLNIQDPLLPAILVAITNFLFTFVALRYVERVGKRSMLLYTVVIMIIGLLLCS--TGF 423
                 3333333..4789****************************************************************************99998..555 PP

                 HTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS-- CS
    Sugar_tr 341 lvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpe 439
                  +++     +++++ i++f+a +a  +g+vpw    E+ p++ Rs+++++  ++nwl n ++sl +  i ++ig   + l+fa++  ++ if++f++pe
  CCD22593.1 424 EKNN----LNLLLTSIVIFVAGYASAMGTVPWSC-VEFLPLNRRSFGASCISCTNWLTNAIVSLSYLSIIDKIGDSSTMLIFAMFSTFSWIFIYFCYPE 517
                 5555....79**********************98.9*************************************************************** PP

                 STT--CCCCGGGT CS
    Sugar_tr 440 tkgrtleeieelf 452
                   g++leei ++f
  CCD22593.1 518 VRGLSLEEIGKIF 530
                 *********8876 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9  18.6   1.5e-32   6.7e-29      36     344 ..      84     472 ..      47     478 .. 0.85
   2 !   28.5  12.8   1.6e-10   7.1e-07       3     176 ..     346     519 ..     344     530 .. 0.87

  Alignments for each domain:
  == domain 1  score: 100.9 bits;  conditional E-value: 1.5e-32
       MFS_1  36 llltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfsl 132
                 +++++ ++g++++s+++ +l+dr+Grr  + ++++++ ++g +++++ s +  +l+v+r++ G++ g+++    +++++++p + rg+++ l s+++  
  CCD22593.1  84 IITSITSIGSFLGSIIAFPLADRCGRRItLAICCMVFIISG-IWMAL-SRSLlFLVVGRLIVGIAVGVAAQCTPIYLSEISPANVRGFMLTLNSVAITG 180
                 4899************************6666666666666.55554.77777********************************************** PP

       MFS_1 133 Gailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......................................... 188
                 G +l ++++ +l   s +Wr++f i ai +++++    ll + ++++r+ ++  +                                            
  CCD22593.1 181 GQLLSYMFAFVLRdLSQSWRYLFGISAIPAIMFIS---LLDFIPESPRWLVTRGKFPeahsalkmiypgasvhqinlklrrliidlgklnhyndidepl 276
                 ********9999966777**************988...999**********9888889***************************************** PP

       MFS_1 189 ...............................................kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlg 239
                                                                k++ + +      + ++++ l+  + ++++   +gf+++++++p++  + l+
  CCD22593.1 277 lqqsrsflmnlnssilsqansievpvinnlvqpsnsysslpnqrsslKRKRHVH----KMEARTKRALMvGCTLMFFQQVTGFNAFMYYSPII-FSKLN 370
                 ***************999999999999999888888887666665332222222....345666666656788999999999999*******7.99999 PP

       MFS_1 240 ls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagta 337
                 +    ll +    l+a+ ++ + ++a r++ r+g+r +ll +++++++++l++      ++  lll ++v++  g++ +++++   +++++p +++ + 
  CCD22593.1 371 IQdP-LLPA---ILVAITNFLFTFVALRYVERVGKRSMLLYTVVIMIIGLLLCSTGFEKNNLNLLLTSIVIFVAGYASAMGTVPWSCVEFLPLNRRSFG 465
                 9944.3333...3444444445999*****************************99999999999999999999******************9999999 PP

       MFS_1 338 sglfnta 344
                 ++ ++ +
  CCD22593.1 466 ASCISCT 472
                 9888755 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 1.6e-10
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..fa.sslwlllvlrvlqGlg 98 
                 l++f   +++++++   p ++ + l+i+   +   + l+a++ +++++++ r ++r+G r++ll +++++++glll++  f  ++l lll + v+  +g
  CCD22593.1 346 LMFFQQVTGFNAFMYYSP-IIFSKLNIQDPLLP--AILVAITNFLFTFVALRYVERVGKRSMLLYTVVIMIIGLLLCStgFEkNNLNLLLTSIVIFVAG 441
                 667778888888888888.89999997777644..455889********************************55555566556666************ PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeep 176
                 +++++ ++    ++  p ++r+++ +++s ++ l  ++  l    +++ +g +++++i+a +s ++ +++++ +pe +
  CCD22593.1 442 YASAMGTVPWSCVEFLPLNRRSFGASCISCTNWLTNAIVSLSYLSIIDKIGDSSTMLIFAMFSTFSWIFIYFCYPEVR 519
                 ***************************************99999999*******************998888877654 PP

>> GPI2  Phosphatidylinositol N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   2.0      0.21   9.2e+02     213     260 ..     106     149 ..      88     214 .. 0.67
   2 !   15.5   3.5     2e-06    0.0088     167     267 ..     333     455 ..     310     466 .. 0.82
   3 ?   -1.6   0.1      0.33   1.5e+03     209     266 ..     458     511 ..     452     516 .. 0.43

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.21
        GPI2 213 rslrhrswrlhvvltvllvllagagvgiilklllavvlllllalimgv 260
                 r+ r    r+++++ +++++++g+ +    +ll++vv+ l++ +++gv
  CCD22593.1 106 RCGR----RITLAICCMVFIISGIWMALSRSLLFLVVGRLIVGIAVGV 149
                 4444....2333333333333333333333344444444444444443 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 2e-06
        GPI2 167 k...............lvaslStnaalmastvLASRLpstlqVFslllfsievfglfPvfrrslrhrswrlhvvltvllvllagagvgiilk....... 243
                 +               ++++  +na +  s ++ S+L+ +      +l++i  f +  v  r++++   r  +++tv+++++ ++++ +  +       
  CCD22593.1 333 EartkralmvgctlmfFQQVTGFNAFMYYSPIIFSKLNIQDPLLPAILVAITNFLFTFVALRYVERVGKRSMLLYTVVIMIIGLLLCSTGFEknnlnll 431
                 0444555667777777889999*******************************************9999998888888888555555544448999999 PP

        GPI2 244 lllavvlllllalimgvcpwwlig 267
                 l+ +v++++  a +mg +pw  + 
  CCD22593.1 432 LTSIVIFVAGYASAMGTVPWSCVE 455
                 9999999999**********8775 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.33
        GPI2 209 Pvfrrslrhrswrlhvvltvllvllagagvgiilklllavvlllllalimgvcpwwli 266
                 P+ rrs+ +  ++ + +lt ++v l+++ ++  ++       +l ++ +   ++w++i
  CCD22593.1 458 PLNRRSFGASCISCTNWLTNAIVSLSYLSIIDKIG---DSSTML-IFAMFSTFSWIFI 511
                 55555555555555555555555544433332222...222222.2222223344444 PP

>> Phage_holin_3_2  Phage holin family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.93   4.2e+03      37      57 ..      49      69 ..      41      98 .. 0.64
   2 ?   12.9   2.6   2.7e-05      0.12      32      71 ..     134     173 ..     109     188 .. 0.80
   3 ?    2.5   0.0     0.046   2.1e+02      62      81 ..     437     456 ..     402     462 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.93
  Phage_holin_3_2 37 GRvilGsavslvagvaLvqfp 57
                     G ++ G  + +++gv+L + p
       CCD22593.1 49 GGLLFGYDTGVISGVLLNLKP 69
                     566666666777777765554 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.7e-05
  Phage_holin_3_2  32 lrLfiGRvilGsavslvagvaLvqfpdlsplavvGigsal 71 
                      l L++GR+i+G av ++a    + + ++sp  v G+   l
       CCD22593.1 134 LFLVVGRLIVGIAVGVAAQCTPIYLSEISPANVRGFMLTL 173
                      569********************************97555 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.046
  Phage_holin_3_2  62 lavvGigsalGiaGyqaiei 81 
                      + v+G +sa+G++  +++e 
       CCD22593.1 437 IFVAGYASAMGTVPWSCVEF 456
                      5689**********999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 4194.44
//
Query:       CCD22594.1  [L=621]
Description: hypothetical protein NDAI_0A04370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-19   70.6   0.3    5.1e-19   69.0   0.3    1.9  1  ERCC4     ERCC4 domain
  ------ inclusion threshold ------
      0.025   14.8   0.3      0.093   13.0   0.0    2.1  2  HHH_3     Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> ERCC4  ERCC4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.3   5.6e-23   5.1e-19       1     153 [.     343     476 ..     343     479 .. 0.90

  Alignments for each domain:
  == domain 1  score: 69.0 bits;  conditional E-value: 5.6e-23
                 EEGGGCTSHHHH......HHTTTSEEEEE--SSSSE.EE...CTT...............EEEEEEEHHHHHHHHCCSHHHHHHHHHHH.H-SEEEEEE CS
       ERCC4   1 iDsrelksgieeyl....leelgvevvietlpigdyilwrrkvkaeynleldieepceekvlverksaddlvasikdgrleeqvsrlkrngykkpillv 95 
                 iD re+ks+ ++++    ++++g++ +i++l +gd+ lw   v++++  ++++  +     +verk++ddl+ sikd+r+ eq++rl+++g+++ ++l+
  CCD22594.1 343 IDHREVKSQKDREFfsntFATKGLKNEIQQLALGDI-LW---VAKNKKTGRQCVLN----TIVERKRLDDLAVSIKDNRFMEQKNRLEKSGCTHKYYLI 433
                 8******77666644999******************.**...***99999999999....*************************************** PP

                 ES..-GGGTT................THHH.HHHHHHHHHHHHS-EEEEESSHHHHHHHH CS
       ERCC4  96 eg..ldqykrknknsrnkqykakvrqinrktiesaLvqlqldfgvsilttesanetaewl 153
                 e    +   +                + ++ +++aL  + +++++s ++t +  et+e +
  CCD22594.1 434 EEtmGNNIGN----------------MGEA-LKTALWLILVYYRFSMIRTLDSDETVESI 476
                 8833222222................8887.**************************987 PP

>> HHH_3  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     1e-05     0.093      35      64 ..      42      71 ..      36      72 .. 0.90
   2 ?   -2.8   0.0      0.89   7.9e+03      16      32 ..     552     568 ..     551     569 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1e-05
       HHH_3 35 eknGpfksreeLlkvkglgpktfeqlagfl 64
                e  G f  +++L+kvkg+g++ + +l+++l
  CCD22594.1 42 ETDGIFYYPKDLKKVKGIGDTIITRLEKKL 71
                667999******************999987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.89
       HHH_3  16 LqklpGlgpklAknIva 32 
                 L++++G++  +A +I+ 
  CCD22594.1 552 LMYIKGVSLEKALAIQS 568
                 8999***9999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 4890.89
//
Query:       CCD22595.1  [L=385]
Description: hypothetical protein NDAI_0A04380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-15   57.7   0.0    2.3e-15   56.8   0.0    1.3  1  rve             Integrase core domain
    2.1e-09   37.3   1.0    5.2e-09   36.1   1.0    1.7  1  Integrase_H2C2  Integrase zinc binding domain
  ------ inclusion threshold ------
      0.016   15.4   0.2      0.044   14.0   0.2    1.8  1  zf-H2C2         H2C2 zinc finger
       0.18   11.6   1.8       0.25   11.2   0.1    2.2  2  rve_3           Integrase core domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   5.1e-19   2.3e-15       3     117 ..     136     248 ..     134     249 .. 0.94

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 5.1e-19
         rve   3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpg 100
                 rp  ++++D+   ++  +++g   +lv+vd f+r+++ +a +++++a+ +++ le+ ++  gg+ p ++l+Dng+ ++  +f + l+  gi++ +t  +
  CCD22595.1 136 RPHMIMSADHItDLD-TSKDGYNEILVIVDLFTRYTYLIAAKKQDTAEETFQRLEERLCLHGGL-PITMLTDNGTKFK-GEFNKNLSWRGINHWNTSIY 231
                 788899999997666.678889******************************************.*************.7******************* PP

         rve 101 rpqdnGkvErfhrtlkd 117
                 r+++nG  Er+++++k+
  CCD22595.1 232 RAKSNGANERMNGIIKQ 248
                 ***************97 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   1.0   1.2e-12   5.2e-09       9      57 ..      71     120 ..      65     121 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.2e-12
  Integrase_H2C2   9 ilkeaHds.agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     i+ + H +   H Gi+ tl+ +r+ry +  ++k  + +v+sC++Cq +kp
      CCD22595.1  71 IIWNTHINnDMHRGIQETLRCIRKRYNFDDLYKLTQVVVNSCKICQSNKP 120
                     7888999999***************************************8 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   9.9e-06     0.044       5      39 .]      82     116 ..      79     116 .. 0.97

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.9e-06
     zf-H2C2   5 HlGinkltallarkYhwlgiketvseVissCkaCq 39 
                 H Gi+ +   ++++Y +  ++++ + V++sCk Cq
  CCD22595.1  82 HRGIQETLRCIRKRYNFDDLYKLTQVVVNSCKICQ 116
                 99********************************9 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   5.5e-05      0.25       2      31 ..     222     251 ..     221     284 .. 0.80
   2 ?   -2.8   0.1       1.3   5.8e+03      40      55 ..     307     322 ..     294     323 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.5e-05
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdell 31 
                 gi++ ++  ++++ Ng  E++ng +++ l 
  CCD22595.1 222 GINHWNTSIYRAKSNGANERMNGIIKQCLR 251
                 8999999******************98544 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
       rve_3  40 aearekleawredYNt 55 
                 ++ r ++++  e+YN+
  CCD22595.1 307 TDTRIQVMSDEEWYNY 322
                 5667777777889995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2698.03
//
Query:       CCD22596.1  [L=842]
Description: hypothetical protein NDAI_0A04400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-68  228.2   0.3    8.4e-68  227.7   0.3    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.4e-33  114.5   0.0    1.1e-32  112.3   0.0    2.1  2  EFG_IV       Elongation factor G, domain IV
    4.2e-22   78.0   0.0    1.2e-21   76.5   0.0    1.8  1  EFG_C        Elongation factor G C-terminus
    5.8e-14   52.0   0.0    2.5e-13   49.9   0.0    2.1  2  EFG_II       Elongation Factor G, domain II
    1.2e-12   48.0   0.1    5.5e-12   45.9   0.0    2.3  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    0.00014   21.9   0.1    0.00029   20.9   0.1    1.5  1  MMR_HSR1     50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.7   0.3   2.8e-71   8.4e-68       2     193 ..      18     343 ..      17     344 .. 0.89

  Alignments for each domain:
  == domain 1  score: 227.7 bits;  conditional E-value: 2.8e-71
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE..............TTCSSEEEEEEEESSSGGGHHH CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle..............ketkkylinliDtPGHvdFske 86 
                 ++rn+++i+hvDhGK+TLtd+L++k+g+is   +ka+e+r++Dt+k+E+ergiTiks+aisl+              +e++++linliD+PGHvdFs+e
  CCD22596.1  18 NVRNMSVIAHVDHGKSTLTDSLVQKAGIISA--AKAGEARFMDTRKDEQERGITIKSTAISLYsempeedvkdinqkTEGNSFLINLIDSPGHVDFSSE 114
                 79*****************************..778889***********************************9855********************* PP

                 HHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH...............HHHHHHHHHTTTTTEEE CS
    GTP_EFTU  87 virglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk...............eeklekygekgekevpv 170
                 v+++lrv+Dga++vvd veGv++qte+vlr+al e+++++v+iNK+Dr+  el+ ++e+++q++sr+                +++++y+ kg    +v
  CCD22596.1 115 VTAALRVTDGALVVVDTVEGVCVQTETVLRQALGERIKPVVCINKVDRALLELQVSKEDLYQSFSRTvesvnviistyadevLGDVQVYPSKG----TV 209
                 ****************************************************************99988888888888877777777777776....5* PP

                 EEEBTTTTBTHH....................................................................................... CS
    GTP_EFTU 171 vfgSalkgegvk....................................................................................... 182
                 +fgS+l+g++++                                                                                       
  CCD22596.1 210 AFGSGLHGWAFTirqfaaryakkfgvdkvkmmerlwgdsyfnpktkkwtnkdtdadgkplerafnmfvldpifrifaavmnfkkdeipvllekleinlk 308
                 *********999888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 ........................HHHHHHHHHSH CS
    GTP_EFTU 183 ........................tllealvellp 193
                                         +l+e++v +lp
  CCD22596.1 309 gdekdlegkallktvmkkflpaadALMEMIVMNLP 343
                 88888888877777777777777777777777666 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.59   1.8e+03       1      14 [.     559     572 ..     559     587 .. 0.80
   2 !  112.3   0.0   3.8e-36   1.1e-32       2     120 ..     605     720 ..     604     721 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.59
                 TCCESCEE.SS-CC CS
      EFG_IV   1 pqVayrEtirkpvk 14 
                 p VayrEt++ ++ 
  CCD22596.1 559 PVVAYRETVESESS 572
                 679*****988766 PP

  == domain 2  score: 112.3 bits;  conditional E-value: 3.8e-36
                 CCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTTTTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE--T..T CS
      EFG_IV   2 qVayrEtirkpvkereeklkkqsggdgqyakvileiePleegsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslhe..v 98 
                 +++ r    ++ k+r+++++++ g+d ++a++i++++P+  ++ n +vd+tk +q+++e++++v+++fq+a+keGp++ge+++ v+v++ld++lh+  +
  CCD22596.1 605 KINPR----DDFKARARIMADEFGWDVTDARKIWCFGPDG-NGPNLVVDQTKAVQYLNEIKDSVVAAFQWATKEGPIFGEQMRSVRVNILDVTLHAdaI 698
                 67777....899**************************87.********************************************************** PP

                 TC-HHHHHHHHCHHHHHHHHCC CS
      EFG_IV  99 dsseaafkpaarralkeallkA 120
                 ++++++++p++rra ++++l A
  CCD22596.1 699 HRGGGQIIPTMRRATYAGFLLA 720
                 ******************9987 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0     4e-25   1.2e-21       2      86 ..     724     809 ..     723     811 .. 0.96

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 4e-25
                 EEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE..TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHH CS
       EFG_C   2 llEPivkveievpeeyvgkvisdlssrrGeiedmeqd.asgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdkl 86 
                 + EP++ vei++pe+ vg ++s l+++rG++++ eq+ ++  ++++a +P++e++gf  eLr++T G++  +m f++++ + +d+l
  CCD22596.1 724 IQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVISEEQRpGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWATLGSDPL 809
                 79***********************************99****************************************9998876 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   8.4e-17   2.5e-13       3      66 ..     486     548 ..     485     557 .. 0.93
   2 ?   -3.7   0.0       4.5   1.3e+04      39      60 ..     567     588 ..     565     590 .. 0.76

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 8.4e-17
      EFG_II   3 ePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkre 66 
                  Pv+++a+e k+ +d  kl + L+rl++ Dp + +++  eT+e i++G GelHlei ++ l+++
  CCD22596.1 486 SPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCV-LTYMAETGEHIVAGTGELHLEICLQDLEND 548
                 59*****************************97.66779*********************9987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.5
      EFG_II  39 rdeeTketilsGmGelHleivv 60 
                 +++e+ +t ls   + H  i++
  CCD22596.1 567 VESESSQTALSKSPNKHNRIYL 588
                 5789999999977777777765 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.2   9.6e+03      24      46 ..      57      85 ..      53     100 .. 0.74
   2 !   45.9   0.0   1.9e-15   5.5e-12       2      74 .]     394     470 ..     393     470 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.2
                 TCTTSEE......EEEEEEEEEEETEEES CS
  GTP_EFTU_D2 24 ndtskke......ivtrissletfheded 46
                 +dt k+e      i+++  sl+ ++++ed
   CCD22596.1 57 MDTRKDEqergitIKSTAISLYSEMPEED 85
                 67777777777777778888888887776 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 1.9e-15
                  EEEEEEEEESEEETTEEEEEEC.TCTTSEE...EEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   2 tvalgrvysGtlkkGdevrilg.ndtskke...ivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  ++a+grv+ Gt+k G++vri g n+ ++k+    +  i+++  ++++  e+++ ++aG+i++++g+++ ++++ tlt
   CCD22596.1 394 FYAFGRVFAGTVKSGQKVRIQGpNYIPGKKddlFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLT 470
                  579***********************9999***999********************************888888875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   9.6e-08   0.00029       7     114 .]      27     159 ..      21     159 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 9.6e-08
                 STTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE..................................EEEEECGGCSSHHHHHHHHHHHH CS
    MMR_HSR1   7 rpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke..................................ielvDtpGliegaseekglgkaf 70 
                 +   GKStL  +l+++   i ++k+g  r + +++ +    e                                  i+l+D pG ++       ++ ++
  CCD22596.1  27 HVDHGKSTLTDSLVQKaGIISAAKAGEARFMDTRKDEQ---ErgitikstaislysempeedvkdinqktegnsflINLIDSPGHVD-------FSSEV 115
                 5678***********94456688889999998886541...12445666777888888888899999999999999********665.......66666 PP

                 HHHHC.TSEEEEEEETTTTCSHHHHHH.HHHHHHHTTSEEEEEEES CS
    MMR_HSR1  71 lalee.adlillvvdaseeklkpldee.leelleeakkplilvlnk 114
                  a  + +d +l+vvd   e++  + e+ l + l  ++++ ++++nk
  CCD22596.1 116 TAALRvTDGALVVVDTV-EGVCVQTETvLRQALG-ERIKPVVCINK 159
                 6666647********77.4343333330344443.33444666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 6128.48
//
Query:       CCD22597.1  [L=271]
Description: hypothetical protein NDAI_0A04410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-77  257.6  14.8    9.5e-77  257.3  14.8    1.0  1  Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family


Domain annotation for each model (and alignments):
>> Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.3  14.8   5.3e-81   9.5e-77      10     206 ..      70     266 ..      64     267 .. 0.98

  Alignments for each domain:
  == domain 1  score: 257.3 bits;  conditional E-value: 5.3e-81
  Gpr1_Fun34_YaaH  10 apvpkrkfaNPaPlgllafalttfvlslvnlgargitepnvvvglalfyGGlvqllaGiwefavgntFgatalssYGgFwlsyaailipgfgil 103
                      a+ ++rk+aNP+Plgl++f+l+++vlsl+n+++rg+t+++++++l +f+GG+++l+aG+++f++g+tF++t++ss+GgFw+s+++i++++f+ +
       CCD22597.1  70 ARRQPRKLANPVPLGLASFSLSCLVLSLINANVRGVTNNKLAISLYMFFGGAIELFAGLLCFVTGDTFSMTVFSSFGGFWISWGCINTDQFHSI 163
                      56789***************************************************************************************** PP

  Gpr1_Fun34_YaaH 104 aaYeedeeelnnalglyllgwfiftfllllatlrstvalfllfffldltflllaigeltgsakvlkAggvfgiiaaflawYnalaglatkensy 197
                      + Y +d+++lnna+g++l++w++ftfl+l++tl+s++ lfll++fldltflll+ig+++++++v++Agg+fgi++++++wY+ ++ +++++nsy
       CCD22597.1 164 TGYGDDTRMLNNAIGFFLAAWTVFTFLMLMCTLKSSWGLFLLLLFLDLTFLLLCIGSFIDNNNVKMAGGYFGILSSCCGWYSLYCMVVDPSNSY 257
                      ********************************************************************************************** PP

  Gpr1_Fun34_YaaH 198 ftlpviplp 206
                      f +++  +p
       CCD22597.1 258 FAFNAHMMP 266
                      ****99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1966.72
//
Query:       CCD22598.1  [L=290]
Description: hypothetical protein NDAI_0A04420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-58  192.1   4.2    3.9e-19   68.4   0.1    3.1  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.012   16.2   0.2       0.15   12.7   0.1    2.3  2  TMEM141    TMEM141 protein family


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.1   4.3e-23   3.9e-19       5      94 ..      15     101 ..      12     104 .. 0.92
   2 !   67.0   0.1   1.2e-22     1e-18       8      95 ..     112     202 ..     106     204 .. 0.89
   3 !   57.3   0.1   1.2e-19   1.1e-15       3      91 ..     209     289 ..     207     290 .] 0.96

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 4.3e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHH.HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGl.rglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +++++l G++aga+++++ +P+d+vK+rlqtq+++   +    +++++k +y +eG+ +g+++G++  +++ a ++a  fv+y++   +l 
  CCD22598.1  15 AMSDILNGSIAGAFGKVIEYPFDTVKVRLQTQGSKMFPT----TWSCIKYTYNHEGVlKGFFQGIGSPIFGAALENATLFVSYNQSSMFLE 101
                 67899****************************998764....8************989************************99877765 PP

  == domain 2  score: 67.0 bits;  conditional E-value: 1.2e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS...HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaa...ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                  l++G++ag++a++v tP++++K++lq+++ ++  +++ +   i+ +l +i++e G++gl++G + +++r +   +++f++ye +k++l+ 
  CCD22598.1 112 ILISGAFAGSCASFVLTPVELIKCKLQVSNLMKDVQGQVRhtkIIPTLTHILRERGILGLWQGQSSTFIRESLGGVAWFATYEIMKKTLKS 202
                 589*************************877765544444556********************************************9976 PP

  == domain 3  score: 57.3 bits;  conditional E-value: 1.2e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                  ++++ l++G+ ag++    ++P d+vK ++qt++ s        +++++kk++ ++G+ g+yrGl+++l+r +pa+a  f +yetl +
  CCD22598.1 209 SKTWELLVSGASAGLAFNGSIFPADTVKSMMQTERIS--------LMNAVKKVLTTHGIPGFYRGLGITLIRAIPANATVFYVYETLSK 289
                 688999*****************************99........99***************************************987 PP

>> TMEM141  TMEM141 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.6e-05      0.15      24      82 ..      69     136 ..      59     142 .. 0.78
   2 ?    0.7   0.0     0.088   7.9e+02      30      66 ..     183     221 ..     167     228 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.6e-05
     TMEM141  24 rallkGlatfvlgta....aaffl....qklvkkklpyplkwnllvs.vvagsvasykvtsvetkkCq 82 
                 + +++G+ + + g+a    + f+     +++++++ ++++  n+l+s ++ags as+  t ve  kC+
  CCD22598.1  69 KGFFQGIGSPIFGAAlenaTLFVSynqsSMFLERHTNVSAMNNILISgAFAGSCASFVLTPVELIKCK 136
                 678888888887764333144432222268999*************9678999************997 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.088
     TMEM141  30 latfvlgtaaafflqklvkkklpy......plkwnllvsvvag 66 
                      lg +a f+  +++kk l+       + +w+llvs   +
  CCD22598.1 183 S----LGGVAWFATYEIMKKTLKSrhggedSKTWELLVSGASA 221
                 3....55566666666666665541111114677888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2235.99
//
Query:       CCD22599.1  [L=116]
Description: hypothetical protein NDAI_0A04430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 843.58
//
Query:       CCD22600.1  [L=221]
Description: hypothetical protein NDAI_0A04440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-12   45.6   0.0    8.7e-12   44.7   0.0    1.4  1  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN
  ------ inclusion threshold ------
       0.15   12.6   3.5       0.34   11.4   3.5    1.5  1  GTA_holin_3TM  Holin of 3TMs, for gene-transfer release
       0.16   11.6  10.0       0.24   11.0  10.0    1.4  1  Spt20          Spt20 family


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   1.5e-15   8.7e-12       3      64 ..      82     144 ..      80     148 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1.5e-15
                 EESETTTSSHHHHHHHHHT.TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1   3 VgnLppdvteeeLkelFsk.fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkkl 64 
                 V++Lp+d++++ ++e+Fs  +G++ ++ l+++e+g+s+g+a ++F +  +A +A++++ng  +
  CCD22600.1  82 VEGLPRDIKQDAVREFFSSqIGGVDRVLLSYNERGQSTGMATITFRNNQQASAAVAKFNGAPI 144
                 89****************99****************************************876 PP

>> GTA_holin_3TM  Holin of 3TMs, for gene-transfer release
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.5   5.8e-05      0.34       5      42 ..     162     198 ..     159     216 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.8e-05
  GTA_holin_3TM   5 davssvvdkvipdpearaaaklekellqlqqagefaea 42 
                    ++v+s+vd+++p p++r +++++++  q+qq++  ++a
     CCD22600.1 162 QPVKSLVDRIRPLPQKRVQQQQQQQPKQQQQRQ-VRRA 198
                    689*******************99888888883.3332 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  10.0     4e-05      0.24     110     155 ..     162     217 ..     121     221 .] 0.50

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4e-05
       Spt20 110 sq..........qnqqqqqqqqqqqqqqqqqqeqqqqqnekdsttteekekksksk 155
                 ++            q+  qqqqqqq++qqqq++     n+k++ +++++ + ++++
  CCD22600.1 162 QPvkslvdrirpLPQKRVQQQQQQQPKQQQQRQVRRAPNKKAAVAKDNRRQRKEKP 217
                 33345555555533444444444444444444444444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1873  (0.104468); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1616.38
//
Query:       CCD22601.1  [L=561]
Description: hypothetical protein NDAI_0A04450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-14   54.2   0.0    3.4e-14   52.9   0.0    1.8  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    2.5e-14   53.2   0.0    4.7e-14   52.3   0.0    1.5  1  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
    5.3e-10   39.2   0.0    1.1e-09   38.1   0.0    1.6  1  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b


Domain annotation for each model (and alignments):
>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   5.6e-18   3.4e-14       2     151 ..     363     529 ..     362     531 .. 0.74

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 5.6e-18
                   SSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHH.....................STTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEE CS
  TPP_enzyme_C   2 iGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGakla.....................kpdrevvaivGDGgflmilqelatavrrnlpitv 77 
                   +G++++++  +  + ++ +y+t+g++ ++G +lpaA G+ +a                     + + + + i GDG+ +m++qel  +vr ++pi +
    CCD22601.1 363 TGSFQFAIRDF-VLPSQLKYITQGFFLSIGMALPAAFGVGIAmqdyprchiskdhpshveipdDYEPRLILIEGDGAAQMTIQELTSMVRFQVPIEI 458
                   68888877777.4556899*********************9555566666777777777655322579***************************** PP

                   EEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS----HHHHHHHTTSE.EE.....EESSH.HHHHHHHHHHHHCSSSEEEE CS
  TPP_enzyme_C  78 vvlnNegygmtggqqepfggkrksgpagkdlkpvdfaklaealGak.ga.....rvekadveeleealkealekkgpali 151
                   ++lnN+gy   +    p+    +++ +    ++ d  kl ea+G          ++e++  ++l+ +lk+  +k++  li
    CCD22601.1 459 MILNNNGYTIERAIRGPTR---SYN-D---VMSWDWTKLLEAFGDFkKQrtvsaKIETR--SKLAMKLKQLKNKGKLNLI 529
                   ********98888644433...222.3...788999******96432223333344555..6677777776666666555 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   7.9e-18   4.7e-14       3     114 ..     166     278 ..     164     303 .. 0.90

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 7.9e-18
                   HHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTT CS
  TPP_enzyme_M   3 kaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgsep 98 
                    +++++ ++k p i+ +  ++r+gas  +++l++ + +  + t+mgk++i+e++  y+g + g  + +++ e + ++Dlvl +G + ++i+++++  
    CCD22601.1 166 MVLQYIYESKCPSIIGDVLCDRFGASSMVNNLIQLTSMWNFATVMGKSIIDESNVMYMGlYNGNESIETVTERFLQSDLVLHFGIQVHEINNGHYTI 262
                   5899*************************************************************************************98876655 PP

                   TTTTT-EEEEEESSCC CS
  TPP_enzyme_M  99 efapeakiihididpa 114
                   +++++ak+i+++++  
    CCD22601.1 263 NYKEDAKVIEFHSEYI 278
                   999999****998765 PP

>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   1.9e-13   1.1e-09      54     114 ..       2      63 ..       1     137 [. 0.79

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 1.9e-13
                   HHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE-.-CCCHHS..TC--T CS
  TPP_enzyme_N  54 aAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsgdr.ptslrgqgvlqqel 114
                    Adg++r ++k+g++++t+g+G ++al+++a+A+++++++l+++g + ++++r+q++ +q+l
    CCD22601.1   2 LADGFSRYSNKIGCLITTYGVGELSALNGIAGAFSENVKVLHIVGVArSVHSRSQDYNNQNL 63 
                   7*******************************************965155555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3976.35
//
Query:       CCD22602.1  [L=79]
Description: hypothetical protein NDAI_0A04460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-14   52.2   0.7    5.5e-14   52.0   0.7    1.1  1  Complex1_LYR    Complex 1 protein (LYR family)
     0.0011   19.7   0.4     0.0012   19.6   0.4    1.2  1  Complex1_LYR_2  Complex1_LYR-like


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.7   6.1e-18   5.5e-14       2      59 .]      11      69 ..      10      69 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 6.1e-18
  Complex1_LYR  2 qvLsLYRalLRearkfpdyntreyfrrriRdeFrknkh..vtDpekieellkkgreeLee 59
                   v++ YR+++R+a ++p ++ +++f  +i +eF+k+++  ++D+  ie+ll++g ++L++
    CCD22602.1 11 DVIHFYRQCIRAALRKPRNK-QQHFVTYIHEEFDKYRDlpRKDFGTIEYLLRAGDKKLKM 69
                  799**************888.*************************************97 PP

>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.4   1.3e-07    0.0012       1      36 [.      12      47 ..      12      73 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.3e-07
  Complex1_LYR_2  1 vlsLYrrllrelrelppelrslgdayvraefrrhkh 36
                    v+++Yr+ +r++ ++p+++++++ +y+++ef++ ++
      CCD22602.1 12 VIHFYRQCIRAALRKPRNKQQHFVTYIHEEFDKYRD 47
                    6899********668*****************9554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.29s 00:00:00.68 Elapsed: 00:00:00.44
# Mc/sec: 539.62
//
Query:       CCD22603.1  [L=252]
Description: hypothetical protein NDAI_0A04470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-36  123.9   0.1      8e-36  123.2   0.1    1.4  1  RhoGAP    RhoGAP domain


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.1   4.4e-40     8e-36       1     148 [.      56     225 ..      56     229 .. 0.96

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 4.4e-40
                 BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCTTTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHH....... CS
      RhoGAP   1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavdsdleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeer....... 92 
                 P+i++kcv ++e+r ++ eg+y++sgsk  v++  +++ ++++++ +l++  +h+v++++Kr+L  lp+p++++++y+e i   ++++  er       
  CCD22603.1  56 PSIITKCVTEVERR-IRAEGLYKKSGSKLLVEKTLNQLATEEDTNINLDDMAIHVVTGVIKRYLITLPNPVFCFDIYDETIGYIRTKNLFERlpiseik 153
                 99*********987.6*****************************************************************999999999999999999 PP

                 ................HHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT-TS CS
      RhoGAP  93 ................lealkellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrpks 148
                                 +++++ +l kLP+ + ++  +L ehL ++a+ + +n+Mt++nLaivf+P+L+ + +
  CCD22603.1 154 ipevktgtgissqtltINEIRGILMKLPQKHLKLSGFLSEHLDKIASLQNKNRMTLHNLAIVFSPCLIYDIN 225
                 9******************************************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1965.15
//
Query:       CCD22604.1  [L=83]
Description: hypothetical protein NDAI_0A04480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-17   61.8   0.1    4.4e-17   61.5   0.1    1.1  1  LSM       LSM domain
     0.0016   18.5   0.0     0.0022   18.1   0.0    1.3  1  SM-ATX    Ataxin 2 SM domain
  ------ inclusion threshold ------
      0.014   15.5   0.1      0.017   15.2   0.1    1.3  1  LSM14     Scd6-like Sm domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.1   7.4e-21   4.4e-17       2      66 ..      14      81 ..      13      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 7.4e-21
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEE....EEEEEEGGGEEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrkl....glvliRGnnivlis 66
                fl++ i+k v+v+l +g+ + G+L+++D fmN+ L++++e+ +++  +  l    ++v++RG+++++is
  CCD22604.1 14 FLSNIIGKPVNVKLYSGMLYNGRLESIDGFMNVALSNTTEHYENSS-NGLLksynSDVFLRGTQVMYIS 81
                9*****************************************9984.4444555599***********8 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.6e-07    0.0022       7      51 ..      14      56 ..      10      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 3.6e-07
                HHHTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS CS
      SM-ATX  7 lltslvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkk 51
                +l +++Gk+v+v++ +G  y G + +++    ++v+L ++ +  +
  CCD22604.1 14 FLSNIIGKPVNVKLYSGMLYNGRLESIDG--FMNVALSNTTEHYE 56
                6889************************9..99999999998877 PP

>> LSM14  Scd6-like Sm domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   2.9e-06     0.017       1      37 [.      17      52 ..      17      81 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.9e-06
       LSM14  1 efIGskislisksdirYeGilceinledstiaLqnvr 37
                ++IG+ ++++  s++ Y+G l +i+    ++aL+n +
  CCD22604.1 17 NIIGKPVNVKLYSGMLYNGRLESID-GFMNVALSNTT 52
                58***********************.67778887732 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       217  (0.0121033); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 702.14
//
Query:       CCD22605.1  [L=106]
Description: hypothetical protein NDAI_0A04490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-40  135.0   0.2      1e-39  134.9   0.2    1.0  1  F1F0-ATPsyn_F  Mitochondrial F1-F0 ATP synthase subunit F of 
  ------ inclusion threshold ------
      0.013   15.9   0.0      0.015   15.7   0.0    1.2  1  WRW            Mitochondrial F1F0-ATP synthase, subunit f


Domain annotation for each model (and alignments):
>> F1F0-ATPsyn_F  Mitochondrial F1-F0 ATP synthase subunit F of fungi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.2   1.2e-43     1e-39       2      92 .]       3      96 ..       2      96 .. 0.96

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 1.2e-43
  F1F0-ATPsyn_F  2 vrralstlipPkiaspkalgaaknaarlervvsfYkkLPkGpapkakak...gllgrykakyfdgknasgkPllhlilgllllgYsieYyfHLr 92
                   ++ralstlipPk++s k+l+aa+na+r+++vv+fYk LPkGpa+k+k+    +++gryka+yfdg+nasgkP++hl+l++++lgYs+eYyfHLr
     CCD22605.1  3 FHRALSTLIPPKVVSVKHLTAAPNAKRITNVVDFYKLLPKGPAAKTKDLsklSPIGRYKARYFDGENASGKPIIHLVLAIVTLGYSMEYYFHLR 96
                   68*****************************************99987655689***************************************8 PP

>> WRW  Mitochondrial F1F0-ATP synthase, subunit f
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   0.0   1.7e-06     0.015      60     102 .]      57     100 ..      26     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.7e-06
         WRW  60 fwRwqhkyvqpkragiapffqvlvavmllfYlinyk.klkhhrn 102
                 + R++ +y+ +++a+ +p++++++a+++l Y ++y  +l+hh+n
  CCD22605.1  57 IGRYKARYFDGENASGKPIIHLVLAIVTLGYSMEYYfHLRHHKN 100
                 46*******************************98626677775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       244  (0.0136092); expected 358.6 (0.02)
Passed bias filter:                      234  (0.0130515); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.22s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 954.63
//
Query:       CCD22606.1  [L=464]
Description: hypothetical protein NDAI_0A04500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-08   33.2   0.0    6.8e-08   32.1   0.0    1.5  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.2e-05   25.5   0.0      3e-05   24.1   0.0    1.7  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0042   17.1   0.0      0.012   15.6   0.0    1.8  2  NAD_binding_9  FAD-NAD(P)-binding
  ------ inclusion threshold ------
      0.021   14.4   0.0      0.035   13.7   0.0    1.4  1  DAO            FAD dependent oxidoreductase
      0.037   13.1   0.0       0.75    8.8   0.0    2.1  2  FAD_binding_2  FAD binding domain
      0.043   13.9   0.0         13    5.8   0.0    2.8  3  Shikimate_DH   Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.3e-11   6.8e-08       1     188 [.      15     237 ..      15     249 .. 0.71
   2 ?   -3.0   0.0       1.1   3.2e+03     220     257 ..     344     382 ..     331     414 .. 0.59

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 2.3e-11
                  CSEEEE--SHHHHHHHHHHHH...HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC CS
                  xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaq...agakvtlvelegtclnggcllskallgvaedaeias...evvkklnqgielllgeevvkidpgkkkvklekkke 92 
                  k+v +iG+GpAG+ +a +l       ++vt+   e+  + +g + + ++   +e ++ ++   +  +k++++ e+ + e v +i+ gk ++kl ++ e
   CCD22606.1  15 KKVSIIGSGPAGFYTAYHLLSkspVPLDVTIW--EKLPVPFGLSRYGVAPDHPEVKNCEEtftDCARKFSSHSEKHHFEFVGGIEIGK-QIKLAQLLE 109
                  5899***************99554499*****..444455556666666666666665556665555666666666664466677788.999998886 PP

                  TCEEEEEESEEEE---E.EE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T...............SEEEEES-SHHHHHHHHHH.....HHHT-... CS
                  xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxx.....xxxxx... RF
  Pyr_redox_2  93 gdeekiaydklvlAtGs.sprdlgipGvaenvgklvrtldsaealklkllp...............krivvvGgGyiGvElAaal.....aklgk... 166
                          d+++l  G+   r lgipG+  +++k+v ++++   +                     +++ ++G+G++++++A  l         +   
   CCD22606.1 110 ------NQDAVILSYGCnGDRYLGIPGE--QGTKGVFSSRQFVNWYNGHPSvamdpeftnfnwsgvRNVGIIGNGNVALDIARILlsnriD---Elwk 196
                  ......45********8466677*****..55566666666666666655577778888888888******************97553331...2455 PP

                  ..................EEEEEESSSSSS.TTS-HHHHHH CS
                  ..................xxxxxxxxxxxx.xxxxxxxxxx RF
  Pyr_redox_2 167 ..................evtlveardrll.raldkelsaa 188
                                    +v ++ +rd l  + ++kel+++
   CCD22606.1 197 htdvstialnclrkapihNVKIIGRRDFLHsKFTNKELREM 237
                  55556666666777777568888888888755555666665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.1
                  ETTSCE..EEESEEEE-S-EEES-HHCS.HCCT-EEEETTE CS
                  xxxxxx..xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx RF
  Pyr_redox_2 220 ledgee..idadlvvvavGvrpstelle.eklgleldergg 257
                  + +g+e  ++ dl++++ G+   +   e  +l ++  e+g 
   CCD22606.1 344 DPNGKEvtYNLDLLITSLGYAGVPLP-EfSELDIAF-EKGH 382
                  44555545778888888888766533.234444444.4443 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     1e-08     3e-05       1      64 [.      19      92 ..      19      95 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1e-08
                   EE--SHHHHHHHHH.HHCC..TEEEEEE-SSSSSSGGG-EECETT........CEECTS---EEETTHHHHCHHH CS
  NAD_binding_8  1 IvGaGlsGlvaAyl.Laka..gfdvlllekrdrlGGraasyevpg........vrvdygahifhgsgyypnvrrl 64
                   I+G+G +G ++Ay+ L+k    +dv+++ek + + G ++    p+         ++   a+ f +    ++++++
     CCD22606.1 19 IIGSGPAGFYTAYHlLSKSpvPLDVTIWEKLPVPFGLSRYGVAPDhpevknceETFTDCARKFSSH-SEKHHFEF 92
                   9***********98357767788***********99999887754444666777777777777774.46666666 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.2e-06     0.012       2      34 ..      19      49 ..      18      65 .. 0.88
   2 ?   -3.2   0.0       2.4   7.2e+03       2      20 ..     172     190 ..     171     200 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.2e-06
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdps 34
                   i+G Gp+G +++ +Ll+++  + pl++t+ ++ 
     CCD22606.1 19 IIGSGPAGFYTAYHLLSKS--PVPLDVTIWEKL 49
                   9*****************7..********9984 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.4
  NAD_binding_9   2 ivGaGprGlavlerLlara 20 
                    i+G G  +l +++ Ll+++
     CCD22606.1 172 IIGNGNVALDIARILLSNR 190
                    99****9999999999986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.2e-05     0.035       2      31 ..      17      51 ..      16     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
                EEEECTSHHHHHHHHHHHHT.T....EEEEESSSS CS
         DAO  2 vviiGGGiiGlstAyeLarr.g....Vtllekgdi 31
                v iiG+G +G  tAy+L  + +    Vt+ ek + 
  CCD22606.1 17 VSIIGSGPAGFYTAYHLLSKsPvpldVTIWEKLPV 51
                77***************7553488*******9744 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.029        88       4      19 ..      19      34 ..      16      52 .. 0.77
   2 ?    8.8   0.0   0.00025      0.75     379     402 ..     385     408 ..     371     417 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.029
                   EE--SHHHHHHHHHHH CS
  FAD_binding_2  4 ViGsGlAGLaAAleaa 19
                   +iGsG AG   A+ + 
     CCD22606.1 19 IIGSGPAGFYTAYHLL 34
                   9***********9875 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00025
                    ETTSBESTTEEESSBTEEE-STCE CS
  FAD_binding_2 379 dengrvldadgqpipGLYAaGeva 402
                    +e+grvl++dg   pGLYA G   
     CCD22606.1 385 NEQGRVLNNDGDLFPGLYASGWIR 408
                    99*****************99766 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0091        27       9      35 ..      11      37 ..       5      46 .. 0.85
   2 ?   -3.2   0.0       2.7   8.1e+03      68      82 ..     103     117 ..      96     120 .. 0.82
   3 ?    5.8   0.0    0.0045        13      13      38 ..     168     193 ..     160     195 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0091
                  ..TT-EEEEES-SHHHHHHHHHHHCCT CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakg 35
                  ++ +kkv +iG G  +  +a hLl+k+
    CCD22606.1 11 HVPRKKVSIIGSGPAGFYTAYHLLSKS 37
                  56689******************9986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.7
                   GHHHHHHT-SEEEE- CS
  Shikimate_DH  68 elkellaeadvvisa 82 
                   +l +ll++ d vi +
    CCD22606.1 103 KLAQLLENQDAVILS 117
                   688999999999987 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0045
                   -EEEEES-SHHHHHHHHHHHCCT-CE CS
  Shikimate_DH  13 kkvlliGaGemaelvakhLlakgvkk 38 
                   ++v +iG+G++a  +a+ Ll++++++
    CCD22606.1 168 RNVGIIGNGNVALDIARILLSNRIDE 193
                   7899****************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3322.25
//
Query:       CCD22607.1  [L=76]
Description: hypothetical protein NDAI_0A04510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 577.51
//
Query:       CCD22608.1  [L=333]
Description: hypothetical protein NDAI_0A04520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-36  125.8   3.5    6.2e-36  123.8   3.5    1.9  1  YTH       YT521-B-like domain
  ------ inclusion threshold ------
      0.049   13.6   0.0      0.096   12.7   0.0    1.5  1  EVE       EVE domain
        0.1   12.3   2.4          3    7.7   0.3    2.7  2  PYST-C1   Plasmodium yoelii subtelomeric region (PYST-C1)


Domain annotation for each model (and alignments):
>> YTH  YT521-B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.8   3.5     1e-39   6.2e-36       1     166 []     181     318 ..     181     318 .. 0.92

  Alignments for each domain:
  == domain 1  score: 123.8 bits;  conditional E-value: 1e-39
                 EEEEEEEESHHHHHHHHHHHCEEEEEHHHHHHHHHHHHCS....EEEEEEEETTTSEEEEEEEEE......SEEBTTS-................GGCC CS
         YTH   1 kryFilKslseedlekSvetgvWatqkhnekkLdqafrts...ekVyLiFsvnksgeFfGyArmasssssssavelassaseesasesidasaeessfw 96 
                 +r+F++Ks + e+++kS+ +g+W++++  +k+L+qaf++    ek++L+Fs+n+sg+F+G+A+m+      s++  + +               ++++w
  CCD22608.1 181 SRFFVIKSINLEHIKKSFYNGIWSSTHFGNKRLSQAFKQLnqnEKIFLFFSANGSGKFCGVAEMI------SNILSDVD---------------TKDVW 258
                 59************************************988889*********************......55544444...............2377* PP

                 --TTEE...........EEEEEEEEEEEEEEGHHCCCHCHCCCTT.BGCG--TTEEE-HHHHHHHHHHHC CS
         YTH  97 eaeskkeeaseeskswgkpFkveWistkrlpfsrtrhlrnpwnenreVkvsrdgtelepsvGrqLlelfe 166
                 e+++          ++gk Fkv+W  ++++++++++++ np+ne ++V++srd++e++  +G+++++lf+
  CCD22608.1 259 ENNE----------KYGKAFKVKWTIVRDIHNKNLKRFLNPLNEMKPVTNSRDTQEIPFPIGHSMMKLFK 318
                 9443..........48***************************************************995 PP

>> EVE  EVE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.6e-05     0.096      32     126 ..     212     298 ..     186     319 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.6e-05
                 HHHHHHCC--TT-EEEEEETSSSS-EEEEEEEEECEEEE-GGGG-TTSTT--TTTBTTS--EEEEEEEEEEEEEEEEHHHHTTHGTCTTSHHHHC CS
         EVE  32 qarnllramkkGDlvlfYhsgeklqaivgiaeVvseaypdetqfdpkskyydpkskkekpwlrvdvkpvkklkrplslkelkaepelegmkllrk 126
                 + +++ ++ +++++++++ s +++ ++ g+ae +s++  d    d k+ ++++++ +++  + v+ ++v+ + +  +lk   +   l++mk +++
  CCD22608.1 212 RLSQAFKQLNQNEKIFLFFSANGSGKFCGVAEMISNILSDV---DTKDVWENNEKYGKA--FKVKWTIVRDIHN-KNLKRFLN--PLNEMKPVTN 298
                 44556677999*******999999**************988...566566665555333..3444444433332.12222222..2444444444 PP

>> PYST-C1  Plasmodium yoelii subtelomeric region (PYST-C1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.3    0.0005         3      17      44 ..      74     101 ..      70     116 .. 0.88
   2 ?    3.7   0.1    0.0086        51      11      30 ..     252     271 ..     249     282 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0005
     PYST-C1  17 nrsNekndIeskhetqLkNnNpkDdkdd 44 
                 ++sN  ++I s+h tqL  n+  D  + 
  CCD22608.1  74 SISNDSSQIFSNHFTQLEDNDTTDITCH 101
                 579*****************99988765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0086
     PYST-C1  11 rgikeInrsNekndIeskhe 30 
                  ++k +  +Nek++ ++k +
  CCD22608.1 252 VDTKDVWENNEKYGKAFKVK 271
                 689**********9999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2197.09
//
Query:       CCD22609.1  [L=484]
Description: hypothetical protein NDAI_0A04530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-120  402.3  22.4   2.1e-120  402.1  22.4    1.0  1  Ammonium_transp  Ammonium Transporter Family
     0.0082   16.1   0.2     0.0082   16.1   0.2    3.9  4  Phage_holin_2_1  Bacteriophage P21 holin S
  ------ inclusion threshold ------
        3.2    7.0  11.1       0.56    9.4   4.6    2.4  2  ABC2_membrane_2  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  402.1  22.4  3.5e-124  2.1e-120       1     399 []      19     430 ..      19     430 .. 0.98

  Alignments for each domain:
  == domain 1  score: 402.1 bits;  conditional E-value: 3.5e-124
                      HHHHHHHHHHHHHHHHHHHHHHHHSSGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCBSSSSSCE-.............TTTTSCCGCCTT CS
  Ammonium_transp   1 aflllsaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign.............lglsaagvqdet 81 
                      af+++ aalv++m++g+++l++gl r+k++l++++ +l++++v++++++++Gyslaf++ ++ ++fig               + + ++v+ + 
       CCD22609.1  19 AFMVIGAALVFIMVPGLGFLYSGLARRKSALSLIWVVLMATLVGMVQWYFWGYSLAFSHTASNNKFIGDlnsfgfrnvygkiKNSDGSEVPGQL 112
                      69*******************************************************************9999999999998888889999999 PP

                      CCHHHHHHHHHHHHHHHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.-SSSTTTTHHHHHHHHHHHHHHHS-ST CS
  Ammonium_transp  82 lldglfflfqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkre 175
                      +++++f++fq++f ++a++i+ ga+aer ++ ++++f+++++tlvy+p+ +w+w+ ggw++++gvl D+Ag++ V ++++vag+++ ++lg+r+
       CCD22609.1 113 YPEIAFAAFQMMFMCVALSIIAGATAERGRLFPHMVFIFIFATLVYCPICYWIWAPGGWAYQWGVL-DWAGGGPVEILSAVAGFVYSIFLGRRK 205
                      99999*************************************************************.*************************** PP

                      TTTGTTTSS--GSBHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCSS-BHHHHHHHHHHHHHHHTTTT CS
  Ammonium_transp 176 grfegkeeaikghnlpfavlGtllLwfgWfgFNaGsaltankrararaavtTllAaaagaltallisrlkegkinvlglanGilAGlVAiTaac 269
                      +       ++++hn+++++lGt +LwfgW+ FN++++lt + r+ + a+++T+++aa+g++t++l+++ +e+k++++gl++Gi+ GlVA+T++ 
       CCD22609.1 206 ENL---LINFRPHNVSMVTLGTSILWFGWLLFNSATSLTPDMRSVY-AFMNTNISAATGGMTWCLLDYRSEKKWSTVGLCSGIICGLVAATPSS 295
                      999...9***************************************.*********************************************** PP

                      TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHHTSHHHC....SSHSSTTGGGT-CHHHHHHHHHHHHHHH CS
  Ammonium_transp 270 avvepwgAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv....askisggllsgegkqlvvqligilvila 359
                      ++++ +g++i G+++g+++++++k +k  lk+dDsld +a Hg++G++Gl+++++faa++v      ++++gg+l++++kq+++q+++i+++++
       CCD22609.1 296 GCITLYGSFIQGIISGIVCNFATK-IKYYLKVDDSLDLLAEHGIAGVVGLIFNALFAADWVIgmdgKTRHRGGWLTHNYKQMYKQIAYIAATVG 388
                      ***********************8.***********************************99***99*************************** PP

                      HHHHHHHHHHHHHHHHTT..SB--HHHHHHSHHHHHHSSSSB CS
  Ammonium_transp 360 yafvvtlilllllklllg..LrvseeeeevglDvaehgetay 399
                      y +vvt +++++l++++g  Lrv+ee+e  glD+ ++ge+ay
       CCD22609.1 389 YCAVVTALICFILDKIPGlqLRVTEEAEARGLDEDQIGEFAY 430
                      *****************9999*******************99 PP

>> Phage_holin_2_1  Bacteriophage P21 holin S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2      0.73   4.4e+03      34      54 ..      48      68 ..      44      69 .. 0.73
   2 !   16.1   0.2   1.4e-06    0.0082      13      46 ..     258     289 ..     251     293 .. 0.81
   3 ?   -0.5   0.0      0.21   1.2e+03      36      55 ..     307     325 ..     303     329 .. 0.77
   4 ?   -0.4   0.0       0.2   1.2e+03       3      20 ..     383     401 ..     382     408 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.73
  Phage_holin_2_1 34 aigvlgglvigllTyltnlYF 54
                     a++++  ++++ l  ++ +YF
       CCD22609.1 48 ALSLIWVVLMATLVGMVQWYF 68
                     556666677777778888998 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.4e-06
  Phage_holin_2_1  13 ggsigywlkqlldklspeeWsaigvlgglvigll 46 
                      ++ +++w   lld  s + Ws++g+ +g++ gl+
       CCD22609.1 258 ATGGMTW--CLLDYRSEKKWSTVGLCSGIICGLV 289
                      2333458..89*********************97 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.21
  Phage_holin_2_1  36 gvlgglvigllTyltnlYFK 55 
                      g+++g+v  ++T +  +Y K
       CCD22609.1 307 GIISGIVCNFATKI-KYYLK 325
                      8999***9999964.55655 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.2
  Phage_holin_2_1   3 iatgvsYgaSg.gsigywl 20 
                      ia++v Y+a   ++i++ l
       CCD22609.1 383 IAATVGYCAVVtALICFIL 401
                      78999***97515666654 PP

>> ABC2_membrane_2  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.6   9.3e-05      0.56     161     282 ..      18     165 ..       8     168 .. 0.78
   2 ?    0.5   0.1      0.05     3e+02     258     279 ..     376     397 ..     350     403 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 9.3e-05
  ABC2_membrane_2 161 llllvvasvlllllvvflalglllSsvarssreaaalalglfvvlailvpivlygvaellagpavp............................ 226
                      + ++v+ + l+++  ++ +lg+l S +ar ++   +++++l++ l+ +v+    g  + la ++++                            
       CCD22609.1  18 IAFMVIGAALVFI--MVPGLGFLYSGLARRKSALSLIWVVLMATLVGMVQWYFWG--YSLA-FSHTasnnkfigdlnsfgfrnvygkiknsdgs 106
                      3444444444444..349***********66666667777777776666655544..4444.33334468888********************* PP

  ABC2_membrane_2 227 ...qeindflsllsptsayntllneilagsdlnalgstatnllilllllavllvlgyvl 282
                          ++ + + +   +++++ +  +i+ag+  ++  +++ +++i++  ++v++ ++y++
       CCD22609.1 107 evpGQLYPEIAFAAFQMMFMCVALSIIAGATAERGRLFPHMVFIFIFATLVYCPICYWI 165
                      ***9**************************88888888899999999999999999975 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.05
  ABC2_membrane_2 258 lgstatnllilllllavllvlg 279
                      +++  ++++++++++av+++l 
       CCD22609.1 376 MYKQIAYIAATVGYCAVVTALI 397
                      5888999***********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3426.34
//
Query:       CCD22610.1  [L=568]
Description: hypothetical protein NDAI_0A04540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-14   54.6   2.3    9.5e-05   23.1   0.0    5.5  5  WD40       WD domain, G-beta repeat
    8.8e-05   22.0   0.4        1.1    8.5   0.0    3.6  4  WD40_like  WD40-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.1e-08   9.5e-05       6      38 .]     226     259 ..     222     259 .. 0.91
   2 ?    0.5   0.0      0.14   1.3e+03      13      35 ..     278     300 ..     268     303 .. 0.81
   3 !    6.8   0.0    0.0015        13       4      38 .]     310     345 ..     307     345 .. 0.72
   4 !    6.0   0.3    0.0026        24      21      38 .]     404     421 ..     393     421 .. 0.78
   5 !   12.1   0.0   3.1e-05      0.28      13      38 .]     470     495 ..     460     495 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.1e-08
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 t +GH + +  +a spdg+++++G++D+++ +W+
  CCD22610.1 226 TTEGHyGEILTVAASPDGKYVVTGGRDKKLIVWS 259
                 457**999*************************5 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.14
                 EEEEEEETTSSEEEEEETTSEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvr 35 
                 v slaf + ++ l +++ D ++r
  CCD22610.1 278 VLSLAFRKGSDELYASCADYKIR 300
                 889999999999976666*9998 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0015
                 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 l +l GH + v +++  +  + ++ G +D+t ++W+
  CCD22610.1 310 LEVLYGHHDvVVDISALSMERCVTVGARDRTAMLWK 345
                 5678899445567755555555888*9********6 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0026
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                 d + +++Gsd+g++ +W+
  CCD22610.1 404 DDSHFVTGSDNGNLSLWS 421
                 4444569**********5 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 3.1e-05
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 +t++   p+++ ++sGs++gt+++W+
  CCD22610.1 470 ITAVYAIPYSNIFISGSYNGTLKVWK 495
                 67777779999999***********6 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.13   1.2e+03     124     155 ..     172     204 ..     117     221 .. 0.65
   2 !    8.5   0.0   0.00013       1.1       2      38 ..     233     269 ..     232     273 .. 0.93
   3 ?    0.5   0.0     0.034     3e+02      43      77 ..     395     429 ..     390     437 .. 0.81
   4 !    7.8   0.1    0.0002       1.8     181     244 ..     456     517 ..     448     527 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.13
   WD40_like 124 IkeikiennkiysLses.afivfdlfsqnieyk 155
                   + ++ + ++y+ s++ ++ ++d++ +n++ k
  CCD22610.1 172 TSNKNKGKIFAYTVSKDlQLTKYDVTDFNQRPK 204
                 333333355566777543677888877776544 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00013
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsiv 38 
                 ei ++  s++g++++ Gg+d+k+ v ++esl  v ++
  CCD22610.1 233 EILTVAASPDGKYVVTGGRDKKLIVWSTESLVPVKVI 269
                 89999**************************999876 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.034
   WD40_like  43 dSvifvklldddlilvvtlDGtillslleneeeve 77 
                  S+  v ++dd +++ ++  G+++l  l +++ v 
  CCD22610.1 395 GSIDVVTMVDDSHFVTGSDNGNLSLWSLAKKKPVF 429
                 488889999999*9999999*99999988877554 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0002
   WD40_like 181 ililkknvilqkidvegkPecillvddylivGgsfkyllliNiklnvntfklrlevegiskikk 244
                 i+ l++n+i+q + + ++    +   +++i+G +   l++  ik nv++f+l  e  g + +++
  CCD22610.1 456 IKQLQDNKIVQPYWITAV--YAIPYSNIFISGSYNGTLKVWKIKENVREFELLGELHGCNGVVT 517
                 555788999999999995..5667789*************************998877766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3938.88
//
Query:       CCD22611.1  [L=949]
Description: hypothetical protein NDAI_0A04550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.2e-86  289.3   0.0    5.6e-86  288.5   0.0    1.4  1  Mcl1_mid     Minichromosome loss protein, Mcl1, middle region
    5.9e-06   26.5   0.0       0.21   11.9   0.0    3.8  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0015   17.1   0.1     0.0029   16.2   0.1    1.4  1  Utp8         Utp8 family
  ------ inclusion threshold ------
      0.093   12.6   0.2       0.34   10.7   0.1    2.0  2  KTSC         KTSC domain
       0.12   11.9   0.0       0.48    9.9   0.0    2.0  1  HPS3_N       Hermansky-Pudlak syndrome 3


Domain annotation for each model (and alignments):
>> Mcl1_mid  Minichromosome loss protein, Mcl1, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.5   0.0   1.6e-89   5.6e-86       1     297 []     494     797 ..     494     797 .. 0.94

  Alignments for each domain:
  == domain 1  score: 288.5 bits;  conditional E-value: 1.6e-89
    Mcl1_mid   1 kpfqpgstplgeegdrryLawNsiGvvttveedeeensieveFhDtslhrevhftdsfgftlasLseeglllAskaskseekkpstlyyrpleswasns 99 
                 kp++pg tp+g++ drryL++N++G+v tv+++e + s++v+F+D ++++e+hf+d fgf+ ++L+e+g+l++    +s  k +++l+yrp++s+   s
  CCD22611.1 494 KPISPGGTPFGNS-DRRYLTMNNVGYVSTVRNSE-QYSVTVSFFDIGRYNEYHFEDLFGFDTCCLNENGTLFS----QS--K-TGQLHYRPHDSV--RS 581
                 699********95.9***************9887.9************************************7....33..3.79**********..69 PP

    Mcl1_mid 100 eWsvkLpeg..EevtavalgkkwvavaTskrylRiFslsGvqlavlslpgpvVtlaaskdklavvyhegaplngnqeleyslldlskkkkkvlqregpl 196
                 +W++ +p +  E++tava++ k++ vaTs +ylR+F+++G++lav ++  p+Vtlaa+++k+++v+     ++ ++ +++sll++s + +k++qre+pl
  CCD22611.1 582 NWTKMIPLQkgERITAVAATPKRIFVATSFGYLRTFNQFGLPLAVEKMV-PIVTLAAQDYKVFTVH-----YSFYHGVSFSLLEQSPTLSKYYQRECPL 674
                 *******9999*************************************9.****************.....999***********9999********** PP

    Mcl1_mid 197 pL...................spgstLkwlgFseegdpviydsdgvlrvlskarepkqarWvpvldtkklakkkss.keds...yWpvgvsedklqcil 272
                 p+                    ++  +k+l+Fs  gdp+i+++d+vl+vl+k+r++ ++rWvp+ldt+++ +k+ + k++     Wp++++ d+l+cil
  CCD22611.1 675 PIilpqgdpevdeefdtnfsnFNPMGIKSLFFSTFGDPCIFGNDNVLLVLTKWRSTLKSRWVPILDTDMEVWKMAGgKNNIdvhAWPLALNYDTLSCIL 773
                 *99999998888888888864337**************************************************9977532555*************** PP

    Mcl1_mid 273 lkgsekyPsvlprpllselelklPl 297
                 +kg++++P++ p+pl+se+e+++P+
  CCD22611.1 774 VKGKNSWPEF-PLPLPSEMEVRIPV 797
                 **********.*************7 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00062       2.2      34      70 ..     133     169 ..     111     184 .. 0.84
   2 !   11.9   0.0   5.8e-05      0.21      35      77 ..     238     280 ..     228     339 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00062
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  + k d+++++L+++ + + L v++ +g+++++++ s+
   CCD22611.1 133 SMKVDEQISQLSYNSQTNTLSVSFVNGNIQFFSMMST 169
                  66889**************************998765 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 5.8e-05
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                  +++++  + +aW+p g+ +av ++d +v+++ +++  ++++l+
   CCD22611.1 238 STNNRLCTRVAWHPRGQHFAVPCDDKTVKVFTIKDYGLLKTLT 280
                  567778899**********************999887777765 PP

>> Utp8  Utp8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   8.1e-07    0.0029     124     321 ..     129     337 ..     118     361 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 8.1e-07
        Utp8 124 sseyevklkkkvvsikisskkkqivvvlenGsielldfelklleslksskkn..kklvetfiedee.kelllvvsk....skkkvayklisl....... 208
                  +++ +k+++++ ++  +s+++++ v + nG+i+++++ ++  ++++   +   k+ +    +d + ++   v+sk    +    + k + +       
  CCD22611.1 129 FHKHSMKVDEQISQLSYNSQTNTLSVSFVNGNIQFFSMMSTSPNKVHELPGYipKVTYDDDDDDDDdDDD--VLSKdkilN---KIDKDFTNddsdled 222
                 567889********************************99966666554443003333333333223333..344422332...355666666666666 PP

        Utp8 209 edesskilelsstiledfklesakfcYq.fGkLYqlkkdkkeisvyslpsfqlqktislpsiiekkeelvslkpistnrvl.LtvknkiyLldlkfesi 305
                 +d+++ ++ ++++ ++ +++  + +++   G+ +++  d k+++v+++ ++ l kt++ psi+ ++   ++ +p   n++  +   nk+  +d   + i
  CCD22611.1 223 SDHEDTAKRIKDSEFSTNNRLCTRVAWHpRGQHFAVPCDDKTVKVFTIKDYGLLKTLTNPSITASNYIDMKYEPLNGNFIAaVDLTNKLIVWDWHTSEI 321
                 67777778888888887776666666555*********************************8666667777899999995489999999999988888 PP

        Utp8 306 lserelthkktfqllk 321
                  ++++++++ t+ + k
  CCD22611.1 322 RYSKDFKEQITNFVWK 337
                 8888888877766655 PP

>> KTSC  KTSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.6   5.7e+03      19      29 ..      71      80 ..      58      82 .. 0.71
   2 ?   10.7   0.1   9.6e-05      0.34       4      26 ..     139     161 ..     137     166 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
                EEETTTEEEEE CS
        KTSC 19 ieFkngsvyqY 29
                 +F +g+vy+Y
  CCD22611.1 71 TTF-HGDVYRY 80
                445.8999999 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 9.6e-05
                 SEEEEEEETTTTEEEEEETTTEE CS
        KTSC   4 niksigYdpetqtLeieFkngsv 26 
                 +i++  Y+++t+tL + F ng++
  CCD22611.1 139 QISQLSYNSQTNTLSVSFVNGNI 161
                 89999****************87 PP

>> HPS3_N  Hermansky-Pudlak syndrome 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00013      0.48      12      57 ..      49      95 ..      45     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00013
      HPS3_N 12 evvsveqeptavcaag.dkLlvatesgcvevydleeeeckvlcrfst 57
                ev+++ ++ ta+c+ + d +lv+t +g v  y+ ++++ +++ rf+ 
  CCD22611.1 49 EVLETAKDLTAICCDSkDTFLVTTFHGDVYRYNFKTPKEDLVARFPL 95
                7899999*******99899**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (949 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 6386.20
//
Query:       CCD22612.1  [L=279]
Description: hypothetical protein NDAI_0A04560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.11   12.8   0.0         22    5.4   0.0    2.3  2  IL4Ra_N   Interleukin-4 receptor alpha chain, N-terminal


Domain annotation for each model (and alignments):
>> IL4Ra_N  Interleukin-4 receptor alpha chain, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0012        22      30      63 ..      15      49 ..       8      57 .. 0.85
   2 ?    4.9   0.0    0.0018        33      21      77 ..     112     168 ..     107     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0012
     IL4Ra_N 30 elkLsYelefelsenltCvpenkkdav.CvCkiev 63
                +l L+Y+ +f+ ++n+t v+en  +++  +C+i  
  CCD22612.1 15 QLGLHYKPSFKGNRNETKVFENIYNELsRICQIRY 49
                6889******************9977757888865 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0018
     IL4Ra_N  21 vespvnCsselkLsYelefelsenltCvpenkkdavCvCkievdkivsadtyslelq 77 
                 +++  n ++ ++L++  +  +++ +t + ++++++ C+  + + +++ ad+ +l++ 
  CCD22612.1 112 LDQRQNDRHSFNLKWMDKKLSNKWRTGIVNQSNNKDCTGFMRISNLIFADKPTLKIS 168
                 566778888999999999888888999********************9999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2182.15
//
Query:       CCD22613.1  [L=437]
Description: hypothetical protein NDAI_0A04570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-13   50.2   0.3    2.3e-12   46.8   0.0    2.7  2  Med26      TFIIS helical bundle-like domain
  ------ inclusion threshold ------
      0.024   14.6   0.8       0.11   12.5   0.8    2.2  1  Phasin     Poly(hydroxyalcanoate) granule associated protein 


Domain annotation for each model (and alignments):
>> Med26  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   2.5e-16   2.3e-12       4      53 .]     273     322 ..     270     322 .. 0.95
   2 ?    0.1   0.1     0.092   8.2e+02      17      27 ..     409     419 ..     400     436 .. 0.65

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 2.5e-16
                 HHS---....HHHHHHSHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHH CS
       Med26   4 aqLeklpittetLkstgIGkvVnalrkhkhetaevktlAksLvekWkkav 53 
                 a L++lpi te+Lk++g+G+vV +++k+k+ ++++++lA++L+ +W +++
  CCD22613.1 273 AALNDLPIKTEHLKESGLGRVVIFYTKSKRVEPQLAKLAEKLIAEWTRPI 322
                 679999999**************************************997 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.092
                 HHHSHHHHHHH CS
       Med26  17 kstgIGkvVna 27 
                 ++tg+G + n+
  CCD22613.1 409 RTTGVGSTLNN 419
                 77888888776 PP

>> Phasin  Poly(hydroxyalcanoate) granule associated protein (phasin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.8   1.3e-05      0.11      75     116 ..     170     211 ..     148     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
      Phasin  75 ekaeeqwdklekafdervakaLsrlgvpsredveaLsarvde 116
                  ++ +  d le+ +de++ +   +++++ + d+++L++r+++
  CCD22613.1 170 RRTRRDEDDLEQYLDEKILRLKDEMNIAAQMDIDTLNKRIET 211
                 35667889********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1332  (0.074293); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3107.77
//
Query:       CCD22614.1  [L=145]
Description: hypothetical protein NDAI_0A04580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-51  170.5   0.3    9.6e-51  170.2   0.3    1.1  1  Ribosom_S12_S23  Ribosomal protein S12/S23


Domain annotation for each model (and alignments):
>> Ribosom_S12_S23  Ribosomal protein S12/S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.2   0.3   5.4e-55   9.6e-51       2     114 .]      32     144 ..      31     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.2 bits;  conditional E-value: 5.4e-55
                      -------S-TSSTTSSEEEEEEEEEEEE---TT--S-EEEEEEEET.TSEEEEEEE-SSS..----TT-EEEEEE--.....BTTSTTEEEEBE CS
  Ribosom_S12_S23   2 kelrkktksdalegapqkrGvvlekvtveakkPnsAlRkvvrvrLikngkevtafipgegalnfldEhdevlvrGirrkgkavkDlpGvrykvv 95 
                      + l+++ ks+++ g+++++G+vlek+++e+k+PnsA+Rk+vrv+Likngk+vtaf+p++g+lnf+dE+devl++G+++kgka++D+pGvr+kvv
       CCD22614.1  32 RLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGKKGKAKGDMPGVRFKVV 125
                      678899**************************************************************************************** PP

                      TS---TSSSTTTTT----T CS
  Ribosom_S12_S23  96 kvagvslkalskykkekpk 114
                      kv+gvsl al+k+kkekp+
       CCD22614.1 126 KVSGVSLLALWKEKKEKPR 144
                      *****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1099.81
//
Query:       CCD22615.1  [L=195]
Description: hypothetical protein NDAI_0A04590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-09   37.4   0.0    3.5e-09   36.9   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    6.3e-06   26.5   0.0    9.1e-06   26.0   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    4.3e-05   23.4   0.0    8.5e-05   22.4   0.0    1.4  1  FR47             FR47-like protein
    8.5e-05   22.5   0.0    0.00012   22.0   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.022   14.4   0.0      0.028   14.1   0.0    1.1  1  HasA             Heme-binding protein A (HasA)


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   9.7e-13   3.5e-09      24     117 .]      39     134 ..      13     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 9.7e-13
                     HHHHHHSTTCEEEEEEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT..TESEEEEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  24 feesfsleaegllvaeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree..gikkivlaveedndaairlYeklG 116
                     + e f++  e++l +   + + G+++++     ++ +++i  + V+pe+r+  l+s+L ++l     +   +++ i l v  +n+ ai+lYeklG
      CCD22615.1  39 WPELFFKSVETTLTGVSHDDISGYMMGKTEGKANEWHTHITAVTVAPEFRRISLASKLCNTLDAMTDSPphEVNFIDLFVKCNNVLAINLYEKLG 133
                     33335555666666667789************99************************99999887787867799******************** PP

                     E CS
  Acetyltransf_1 117 F 117
                     +
      CCD22615.1 134 Y 134
                     8 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   2.5e-09   9.1e-06      19      75 ..      64     135 ..      40     136 .. 0.67

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 2.5e-09
                     EEEEES......TCTEEEEE-GGGTTSSHHHHHHHH.........TTSEEE.EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  19 alslld......aeitrlaVdpeyrgkGiGraLlea.........aekgii.le.qlelnaekaikfYeklGFe 75 
                       + ++      ++it + V+pe+r+  ++++L +              ++ +   ++ n+  ai++YeklG+ 
      CCD22615.1  64 MGKTEGkanewhTHITAVTVAPEFRRISLASKLCNTldamtdsppH--EVNfIDlFVKCNNVLAINLYEKLGYS 135
                     33444455556677788****************9964544433331..2222222233355589********96 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.4e-08   8.5e-05      22      81 ..      76     138 ..      66     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.4e-08
                 SSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH...S-S-EEEEEETT-HHHHHHHHHHT-EEEE CS
        FR47  22 gelgalqvlpehrrrGlgsrlvkalakeiae...rgktvllvvvasNtpsirlyeklGfekie 81 
                 + + a+ v pe+rr  l+s+l + l +       + + + l v+ +N  +i+lyeklG+ +++
  CCD22615.1  76 THITAVTVAPEFRRISLASKLCNTLDAMTDSpphEVNFIDLFVKCNNVLAINLYEKLGYSVYR 138
                 889******************986655555422166667799*****************9884 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.4e-08   0.00012      42     110 ..      59     138 ..      39     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 3.4e-08
  Acetyltransf_10  42 ivGvielrdgs.......hisllfVdpeyrgqGigkaLleaveeeaekdgikl...eltvnasp.yavpfYeklGFkavg 110
                      i G+   ++++       hi+ + V+pe+r+  ++++L +++ +  +  ++++   +l v+ ++  a+++YeklG+ +  
       CCD22615.1  59 ISGYMMGKTEGkanewhtHITAVTVAPEFRRISLASKLCNTLDAMTDSPPHEVnfiDLFVKCNNvLAINLYEKLGYSVYR 138
                      555552233333455688***************************987777778899*******9***********8865 PP

>> HasA  Heme-binding protein A (HasA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   7.9e-06     0.028     129     189 ..      44     107 ..      25     125 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.9e-06
                 -C-HHHHCCSHHHHHHHHHHCT-THHHHHHHHH..CCH-TTSBHHHHCCCCCE.EETTXXXXXX CS
        HasA 129 vssltegrqGevhkvvyGlmsGdssalleelda..kaidvnsafddlsiasva.adsaaaaaad 189
                 ++s++ + +G+ h+ + G m G+++  ++e ++   a+ v   f  +s+as+   + +a+++ +
  CCD22615.1  44 FKSVETTLTGVSHDDISGYMMGKTEGKANEWHThiTAVTVAPEFRRISLASKLcNTLDAMTDSP 107
                 48999999******************99999887899**************9967788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1402.99
//
Query:       CCD22616.1  [L=327]
Description: hypothetical protein NDAI_0A04600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-54  181.1   6.0    1.3e-18   66.7   0.1    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.1   7.1e-23   1.3e-18       4      94 ..       2     108 ..       1     111 [. 0.83
   2 !   51.3   0.1   4.5e-18     8e-14       3      94 ..     123     211 ..     122     214 .. 0.92
   3 !   65.3   0.2   1.9e-22   3.5e-18       4      95 ..     221     307 ..     219     309 .. 0.95

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 7.1e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..........CCCSSTTTSCSS................HHHHHHHHHHHHHHHGGGTTHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqt..........qkksskksksaa................ildvlkkiykeeGlrglyrGllpnllrva 76 
                 s+l++ ++G++a a+a  +++P+d++Ktr+q+          q          +                +++ + +i+k +G+ gly+G+  +++ ++
  CCD22616.1   2 STLESAITGAIASAMANALVYPIDLAKTRIQSevnnatqrggQ----------KqdsqkrsiterkksrdVIRYILEILKRKGIQGLYQGAPTSIFSSF 90 
                 568899**************************66666655541..........33344455556777677888889999******************** PP

                 HHHHHHHHHHHHHHHHHC CS
   Mito_carr  77 pasalkfvlyetlkrlll 94 
                 ++++ +f+ y +l+r ++
  CCD22616.1  91 VQNFFYFLWYTFLRRKYF 108
                 *************99876 PP

  == domain 2  score: 51.3 bits;  conditional E-value: 4.5e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHH..HHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiyk..eeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ls+l+el++G++a+++++l+t+P++vv tr qt +++++ +    i++v+k +y+  +  ++++++G+ ++l+ ++ + +++f+++++lk+ll+
  CCD22616.1 123 LSTLEELITGVCAATMTQLITNPIEVVLTRQQTMENEGNVT----IMSVIKAVYEdnNRKMSSFWKGFKVSLILTI-NPSITFTSFQKLKELLF 211
                 57899*******************************99874....9********633677899************9.**************996 PP

  == domain 3  score: 65.3 bits;  conditional E-value: 1.9e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 ++  +++ G++a++++tl+t+Pl v+K+ lq ++++ ++     + +vl  i+k+eG+++l++Gl+p++++ +  ++  f++   l++l +k
  CCD22616.1 221 TAGYNFALGAMAKIISTLCTQPLIVAKVSLQRANSNFTH-----FQEVLEYIIKNEGISSLWKGLIPQIMKGILVQGFLFAFKGELIKLWKK 307
                 56679*******************************999.....9***************************************99999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1040  (0.0580066); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2481.46
//
Query:       CCD22617.1  [L=348]
Description: hypothetical protein NDAI_0A04610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-46  158.1   0.0    3.4e-46  157.8   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.8   0.0   1.9e-50   3.4e-46       3     291 ..      17     331 ..      16     334 .. 0.93

  Alignments for each domain:
  == domain 1  score: 157.8 bits;  conditional E-value: 1.9e-50
                   EEE-SSS-ST..TS-HHHHHHHHHHHHHTT--.....EEE--TT-.TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHH CS
  Aldo_ket_red   3 glGtwqlgsk.eeiskeealellrraleaGin.....ffDtAevY.gkgqseellGealkksrkkreeviiatKvdlrdaeiksglskenireslee 92 
                   g+G+++l++k  ++++++a+++++++++         ff+++e+Y  + ++ ++  e+++k+++ r++vii++K++++  +   ++++++++ s+++
    CCD22617.1  17 GYGLMSLTWKePPVPMDQAFKTMHQVIKLAQArnhkaFFNVGEFYgPDYRNLTYCKEFFAKYPDLRKDVIISCKGAYDGINFVCQGKHDQVIDSVKA 113
                   89********99*************99888777899*********445567777999******************888888888999999******* PP

                   HHHHHT-S-EEEEEE-S--TTS-......HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BTT.-HHHHTTHHHHHHHTT CS
  Aldo_ket_red  93 slkrLgtdyvDllllHrpdpslp.....sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynll.releeegllelckkkg 183
                    ++++g  y+D+++ +r d++ +     +  e+++al+el++eG i a+++S++ ++ + +++k+    +++v+ve +++ +++ ++ ++++c ++g
    CCD22617.1 114 CVQNIG-GYIDIFEPARLDMEICskdevYPRETFEALAELIEEGVIGAMSLSEVVAKEITAVHKDFAKYLACVEVELSMFtTDILHNDVAKVCSEYG 209
                   ******.6***************9***9********************************************************************* PP

                   -EEEEBSTTGGGTTGTTTSS---SSSCCC-------.......TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTS.......TT-SEEEE--SS CS
  Aldo_ket_red 184 vpliaysplggGlltgkyqseedkedkeprkdlkrd.......ertsknldaaeelselakehgvslaqlalryalsq.......pavgivipgasn 266
                   + +i+ysplg+Glltg+ ++++d ++++ +k    +       + +  +++ +e+  +  + h vsl+q+al ++ +         a+ i+ip+ s+
    CCD22617.1 210 LIIICYSPLGRGLLTGQIKTNNDIPEGSYQKAISWFhgdrlkqNLVLVQFLENEIRLKRDAAHAVSLTQIALGWIKHFnsrkefsGARFIPIPSGST 306
                   *************************9988888766699999987777888888888899999*************95588888888*********** PP

                   HHHHHHHHGGGG----HHHHHHHHH CS
  Aldo_ket_red 267 ieqlednldalelklseeevaelde 291
                   ++++e+n+d  + k+++ee+++++ 
    CCD22617.1 307 LDKIEQNFDEDKCKITDEEFTKIED 331
                   **********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2538.02
//
Query:       CCD22618.1  [L=454]
Description: hypothetical protein NDAI_0A04620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-94  314.0   4.4    7.7e-94  314.0   4.4    1.6  2  LETM1           LETM1-like protein
  ------ inclusion threshold ------
        4.9    7.2  12.6       0.72    9.9   7.7    1.9  2  Pinin_SDK_memA  pinin/SDK/memA/ protein conserved region


Domain annotation for each model (and alignments):
>> LETM1  LETM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.0   4.4   8.6e-98   7.7e-94       1     267 [.      75     337 ..      75     338 .. 0.97
   2 ?   -2.7   1.0      0.32   2.9e+03     133     175 ..     386     424 ..     358     448 .. 0.55

  Alignments for each domain:
  == domain 1  score: 314.0 bits;  conditional E-value: 8.6e-98
       LETM1   1 lfpkikkelkhyvkGtkllfadvkisvkllvkllkgkeLsrrEreqlkrttaDllrlvPfsvfiivPfaelllpvllklFPnlLpstFeskkqkeeklk 99 
                 l++++k+el+hy++Gtkll++++kis+kll+k+ +g++LsrrE  qlkrtt+D++rlvPf++f+++Pfaelllpv+lklFPnlLpst+es+k+k +k +
  CCD22618.1  75 LWTRVKHELHHYWDGTKLLGLEIKISSKLLIKMSAGYALSRRELLQLKRTTQDIVRLVPFAAFVLIPFAELLLPVALKLFPNLLPSTYESSKSKASKIN 173
                 599************************************************************************************************ PP

       LETM1 100 krlkarlevakfLqetleeslkkkkkekkekaeelkeflkkvrsggepeevsneeilkvaklFkdeltLdnlsrkqlkalckllslqpfgtdnllryrl 198
                 + +k+r+ ++++++e+   ++ k++++++e++  +++f+k+vr +gep  +s+e++++vaklF+d+++Ldnl+r+ l+a++k+++lqpfgtd +lryr+
  CCD22618.1 174 SLRKTRELMSNIIKENK--VHFKPNDISSEQKAVFNQFYKHVRATGEP--ESREQLIHVAKLFTDDTVLDNLTRPYLVAMAKYMNLQPFGTDVMLRYRI 268
                 *************9988..33355899999****************77..5************************************************ PP

       LETM1 199 rkklreikedDkaikreGvdsLseeeLqeacrsRGlraaglseeelreqLeqWlelslkkkvpsslLlL 267
                 r+k+  +k+dD  i++e  ++L++ eL+ ac sRG+r+ ++s+++lr++L+ Wl+++lk+k+ps+lL++
  CCD22618.1 269 RYKMLDLKKDDLSIYYEDAEQLDSAELRMACTSRGIRVSNISDDNLRNNLRIWLNMRLKDKIPSTLLIM 337
                 *******************************************************************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.32
       LETM1 133 elkeflkkvrsggepeevsneeilkvaklFkdeltLdnlsrkq 175
                 +l+++ ++ +  +e e++++  i++v    kd+++Ld l++++
  CCD22618.1 386 KLAQLKEQEEIMKEEEQQEEGAIVRV----KDDISLDALDQQH 424
                 33333333222222233344444444....3445555554444 PP

>> Pinin_SDK_memA  pinin/SDK/memA/ protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.18   1.6e+03      87     125 ..     171     206 ..     159     216 .. 0.59
   2 ?    9.9   7.7     8e-05      0.72      30      97 ..     373     439 ..     346     451 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.18
  Pinin_SDK_memA  87 lmetwhenkkalanflrTktePpiyYlPwkltekteell 125
                     + +++ +  + ++n ++   e ++ ++P+  +++++++ 
      CCD22618.1 171 KINSLRKTRELMSNIIK---ENKVHFKPNDISSEQKAVF 206
                     34444555555555554...5566666666666666554 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 8e-05
  Pinin_SDK_memA  30 ekeerraeiekrleekakeekeeleerkrekreeleeerraeqkelraleeklelkelmetwhenkka 97 
                      +  +++e+  +++ ++ +e+ee+  +++e++ee    r + ++ l+al+++ e++ +m+t  + +k+
      CCD22618.1 373 VNIVKEEEVSAKQKLAQLKEQEEI-MKEEEQQEEGAIVRVKDDISLDALDQQHEEQSEMKTEINVQKN 439
                     4567999**********9*****9.555667788899999999******9999999988887655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1753  (0.0977746); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3507.51
//
Query:       CCD22619.1  [L=1452]
Description: hypothetical protein NDAI_0A04630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-68  228.1   2.7      8e-68  228.1   2.7    2.2  2  SH2_2        SH2 domain
    5.7e-64  214.4   0.1    1.7e-63  212.9   0.1    1.9  1  YqgF         Holliday-junction resolvase-like of SPT6
    7.1e-45  151.6   1.5    7.3e-44  148.4   0.2    3.2  3  HHH_7        Helix-hairpin-helix motif
    1.6e-34  118.8   3.7    2.2e-34  118.4   1.2    2.7  2  HTH_44       Helix-turn-helix DNA-binding domain of SPT6
    4.8e-21   75.2  21.6    4.8e-21   75.2  21.6    6.2  6  SPT6_acidic  Acidic N-terminal SPT6
      2e-12   47.0   0.1      7e-12   45.3   0.1    2.1  1  SH2          SH2 domain
    6.6e-05   23.7   1.4     0.0007   20.5   0.2    3.7  2  HHH_9        HHH domain
     0.0094   16.4   0.0      0.022   15.2   0.0    1.6  1  Tex_YqgF     Tex protein YqgF-like domain


Domain annotation for each model (and alignments):
>> SH2_2  SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   1.8         3   6.8e+03     115     154 ..     186     225 ..     158     232 .. 0.69
   2 !  228.1   2.7   3.6e-71     8e-68       2     215 ..    1226    1437 ..    1225    1438 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3
       SH2_2 115 iarhvepmakkveellahekfkkgskeeveelLreekkan 154
                  ++h + + +++++ ++ + f ++++e  ++ ++e+k+ +
  CCD22619.1 186 RVSHKTGILDELDDFIEEDEFSDEDEETRQHRIQERKMMR 225
                 4567777777888888888888888887777777776655 PP

  == domain 2  score: 228.1 bits;  conditional E-value: 3.6e-71
       SH2_2    2 ydeeaeeedlkkeeekkkkeekkrkkyvkRvikHpnFknvsaeeaeellaskerGdvviRPSskgedhLtvtwkvadgvyqhidvlEedkenefslg 98  
                  +d ++e ed+++e++      ++r+k ++Rvi+Hp + +++ ++ae++l+skerGd+viR Ss+g+dhL +twk++++++qh+d++E +ken ++lg
  CCD22619.1 1226 WDLKQELEDSEEEKKITM--VEARAKRTHRVINHPYYFPFNGKQAEDYLRSKERGDFVIRQSSRGDDHLVITWKLDKDLFQHVDIKELEKENPLALG 1320
                  999*****9666644433..444555568******************************************************************** PP

       SH2_2   99 ktLiigkeeyeDLDeliarhvepmakkveellahekfkkgskeeveelLreekkanpkrsvYafslskkkpgkflLsflankkarveheyvkvipeg 195 
                  + L++++++y+DLD++i+++ ++ ++ ++el+++ekfk+g+k+ev ++++e+++ np++svY+fsl+ ++pg+f+L+f+ n ++++ +++vk++ +g
  CCD22619.1 1321 RVLVVEGQKYHDLDQIIVEYLQNKIRLLNELTTNEKFKRGNKKEVIKFIEEYSEVNPNKSVYYFSLNYENPGWFYLMFKLNAQSKLYTWNVKLTNTG 1417
                  ************************************************************************************************* PP

       SH2_2  196 fklrkqefddvkaLlnwFKk 215 
                  f l + ++++v +L+n+FK+
  CCD22619.1 1418 FFLVNYNYPTVVQLCNGFKT 1437
                  *******************7 PP

>> YqgF  Holliday-junction resolvase-like of SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.9   0.1   7.5e-67   1.7e-63       1     149 [.     745     895 ..     745     896 .. 0.99

  Alignments for each domain:
  == domain 1  score: 212.9 bits;  conditional E-value: 7.5e-67
                 S-----EEEEE-TT--.TTS-EEEEEE-TTS-EEEEEEE-S-TT-SS-SHHHHHHHHHHHHHH--SEEEE--SSTHHHHHHHHHHHHHHHTT.B-TTS- CS
        YqgF   1 qgkiikvLgvafgkgr.sddaiicvlvngeGevvdslklaareedrekkakfvetlkkfllskkPdvigvsGenrdaqkliedvkevlheke.qdsrls 97 
                 ++ki+++L++++g+g  ++dai++v+vn++G++v+++k++++++d+ ++++f++tl++++++++P++ig++G+n+++qk++++++ev+h+k+ +d++++
  CCD22619.1 745 DPKIPRILTLTCGQGVfGQDAIMAVFVNRKGDFVKDFKIVDNPFDKVNPQNFEDTLDNIIQNCQPNAIGINGPNPKTQKFYKKLQEVIHKKQiVDNKGH 843
                 69************************************************************************************************* PP

                 B--EEE---TTHHHHHTSHHHHHHSTT--HHHHHHHHHHHHHH-HHHHHHCS CS
        YqgF  98 tvgvilvddevailYqnskkaeaefrdkPpllkyavalaRkiqdPLleyaql 149
                  +++i+vddevai+Yq s++a +ef++kPpl+ky++alaR++q+PLley++l
  CCD22619.1 844 NIPIIYVDDEVAIRYQHSERASQEFPNKPPLIKYCIALARYMQSPLLEYSNL 895
                 *************************************************997 PP

>> HHH_7  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.78   1.8e+03      16      48 ..     466     498 ..     460     537 .. 0.74
   2 ?   -0.9   0.0      0.91     2e+03      21      56 ..     688     723 ..     670     735 .. 0.77
   3 !  148.4   0.2   3.3e-47   7.3e-44       1     104 []     898    1001 ..     898    1001 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.78
                 -HHHHHHHHHHHHHHHHHHH-EEHHHHCT-HHH CS
       HHH_7  16 skeellkaletalvdivnlvgvdvnkavankye 48 
                 s ++++++le ++ + +n+v+++  ++  +k+ 
  CCD22619.1 466 SLQDIYNYLEFKYAQEINEVSLEHSETNGKKHM 498
                 5577899**************998877666554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.91
                 HHHHHHHHHHHHHHH-EEHHHHCT-HHHHGGGGGST CS
       HHH_7  21 lkaletalvdivnlvgvdvnkavankyeaallkyia 56 
                  +  +t +++ v+++  d+ + ++++ e++  k +a
  CCD22619.1 688 NNFRKTSFIQAVEKIFADISREIKDDLEKTCQKLVA 723
                 456679999999999999999999888877766665 PP

  == domain 3  score: 148.4 bits;  conditional E-value: 3.3e-47
                  HHHHTS---TTGGGS-HHHHHHHHHHHHHHHHHHH-EEHHHHCT-HHHHGGGGGSTT--HHHHHHHHHHHHHC-S----TTHHHHTTSS-HHHHHHH CS
       HHH_7    1 edvlslsfhPlqellskeellkaletalvdivnlvgvdvnkavankyeaallkyiaGlGprkatdllkklkrlnerlearsqlitkqilskkvflnc 97  
                  e+++sls+h +q ll+ + l++aleta+vdivnlvgv+vnka++n y+a+ lkyi+G+G+rka+d+l++l+rlne+l ar+qlit++il+k++f+n+
  CCD22619.1  898 EELRSLSIHQHQLLLPIDILTRALETAFVDIVNLVGVEVNKATDNAYYASTLKYISGFGKRKAIDFLESLQRLNEPLLARQQLITHNILHKTIFMNS 994 
                  799********************************************************************************************** PP

                  CCCEE-- CS
       HHH_7   98 agflkid 104 
                  agfl+i+
  CCD22619.1  995 AGFLYIS 1001
                  *****96 PP

>> HTH_44  Helix-turn-helix DNA-binding domain of SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   1.2   9.6e-38   2.2e-34       3     115 .]     339     447 ..     337     447 .. 0.97
   2 ?   -2.6   0.0       3.2   7.2e+03      26      45 ..     709     728 ..     683     742 .. 0.59

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 9.6e-38
                 ---HHHHHHHHHHHHHHHHHHH---SS---HHHHHHHHHHHHHHHTS---HHHHHHH-GGGSB-SSTTS-....B--HHHHHHHHHHHHHHHHHHHHHH CS
      HTH_44   3 eltdeeleeeaeWiakkllkekqesleeleeefkeavkkvleFlvkdelEvPfifqhRkdyllhaekeekkaeklLneddLwriveldikfrsllekrn 101
                 +l+ e++e e++Wi++k +++k+++++++ +efke+v+++++Fl++d+lEvPfi+++R++y++++ ++ +    +L+eddLw+iv ldi+f+s++ kr+
  CCD22619.1 339 NLSLEDQELEKNWISDKTAVDKNFDPSYDLTEFKECVGNAIKFLSQDNLEVPFIYAYRRNYISSKARDGF----VLTEDDLWDIVALDIEFHSIIYKRD 433
                 68889*********************************************************99999988....************************* PP

                 HHHHHHHCC----H CS
      HTH_44 102 aleklyeklkvdDk 115
                 +++++y++lk++D+
  CCD22619.1 434 YVKRFYKELKLNDE 447
                 ***********995 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.2
                 --SS---HHHHHHHHHHHHH CS
      HTH_44  26 esleeleeefkeavkkvleF 45 
                 e +++le+ +++ v+k+++ 
  CCD22619.1 709 EIKDDLEKTCQKLVAKTVRH 728
                 22336667777777777754 PP

>> SPT6_acidic  Acidic N-terminal SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   6.0         8   1.8e+04       7      35 ..       2      30 ..       1      35 [. 0.66
   2 !   75.2  21.6   2.1e-24   4.8e-21       1      89 []      37     129 ..      37     129 .. 0.86
   3 ?   -6.5  18.3         8   1.8e+04       4      58 ..     137     198 ..     128     199 .. 0.54
   4 ?   -2.5  15.2       3.7   8.3e+03       6      48 ..     178     230 ..     173     252 .. 0.37
   5 ?   -3.3   2.3       6.6   1.5e+04      16      52 ..     267     304 ..     260     331 .. 0.46
   6 ?   -2.6   0.4       3.8   8.5e+03      26      44 ..    1233    1251 ..    1226    1257 .. 0.42

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 8
  SPT6_acidic  7 dddeeeerkvregFIvddd.eeeeeeeese 35
                 d+d e+    re+ ++d++ + ++  +++e
   CCD22619.1  2 DEDREALATAREESVDDNNmD-DNPPSDEE 30
                 8999999********999753.33222222 PP

  == domain 2  score: 75.2 bits;  conditional E-value: 2.1e-24
  SPT6_acidic   1 DssEE...edddeeeerkvregFIvdddeeeeeeeeseeeeekkrrkkkkkrreeeedaLdedDldLieentgvkvkrkk...kkfkRlkraede 89 
                  DssEE    ddde+e+rkv+egFIvdd+e++++e    + ++k+rrk+++k+reee+d+L+edDldL++en+gvk++ +     ++kRlkr+ de
   CCD22619.1  37 DSSEEddnLDDDEDEARKVKEGFIVDDEEDSDKELV--SGTSKRRRKHRRKQREEEDDRLSEDDLDLLMENAGVKRTATAtssGRLKRLKRVGDE 129
                  89999666679***************9877555444..4678999999999998999*******************9877788999***999875 PP

  == domain 3  score: -6.5 bits;  conditional E-value: 8
  SPT6_acidic   4 EE.edddeeeerkvregFIvdddeeeeeeeesee....eeekkrrkkkkkrreeee..daLd 58 
                  E    + +e+   ++e+F  ++++eeee+  +++    +e ++ ++++++  ++    d+Ld
   CCD22619.1 137 EGtTRTHKEDSASRLEDFFSEEENEEEETTTTRRraeyDELEEDENNRNRVSHKTGilDELD 198
                  3345577888899999**99998666666555533666333333333333332222344555 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 3.7
  SPT6_acidic   6 edddeeeerkvregFIvdd.d.........eeeeeeeeseeeeekkrrkkkkk 48 
                  e+d+++++r  ++  I d+ d         +e+ee+ +++ +e+k  r ++ k
   CCD22619.1 178 EEDENNRNRVSHKTGILDElDdfieedefsDEDEETRQHRIQERKMMRDQRMK 230
                  33333334433333344433223320003222222222221222222333222 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 6.6
  SPT6_acidic  16 vregFIvdddeeeeeeeeseeeeekkrrkkkkkrre....e 52 
                  ++eg  +  de ++ + +   ee+  r kkk   r+    +
   CCD22619.1 267 IEEGTLDVGDEGNNGQYD---EETGTRSKKKITLRDiydlQ 304
                  444444333333222222...23333333433333234431 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 3.8
  SPT6_acidic   26 eeeeeeeesee.eeekkrrk 44  
                   e++eee++  +  e++ +r 
   CCD22619.1 1233 EDSEEEKKI-TmVEARAKRT 1251
                   222222221.1233333333 PP

>> SH2  SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.1   3.1e-15     7e-12       1      77 []    1259    1340 ..    1259    1340 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 3.1e-15
                  TEESSSHHHHHHHHHHTTSSTTEEEEEEESSSTTEEEEEEEETT.EEEEEEEEEETTS......EEEEETTEEESSHHHHHHHH CS
         SH2    1 WyhgkisrkeaerlLleekkdGtFLvReSeskpGdytlsvvedg.kvkhykiqsteng......kyyiteeekfsslaeLvehY 77  
                  +y+ +  + +ae++L++ k++G+F++R+S++ +++++++++ d+  ++h++i+++e++      ++ ++e++k+ +l++++  Y
  CCD22619.1 1259 YYFPFNGK-QAEDYLRS-KERGDFVIRQSSRGDDHLVITWKLDKdLFQHVDIKELEKEnplalgRVLVVEGQKYHDLDQIIVEY 1340
                  56666666.********.**********************998879***********************************988 PP

>> HHH_9  HHH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       6.4   1.4e+04      15      40 ..     698     721 ..     697     738 .. 0.61
   2 !   20.5   0.2   3.1e-07    0.0007       2      34 ..    1016    1049 ..    1015    1095 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.4
       HHH_9  15 lakkllkklgldlkeligeeallkkl 40 
                 +++k+++++  ++k+  +++   +kl
  CCD22619.1 698 AVEKIFADISREIKDDLEKT--CQKL 721
                 68888888888888754433..2333 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 3.1e-07
       HHH_9    2 pLDnTavHPEsYalakkllkk.lgldlkeligee 34  
                   LD+T +HPE Y+la k++++ l+ d  +++++e
  CCD22619.1 1016 QLDSTRIHPEDYHLATKVAADaLEYDPDTIAEKE 1049
                  59***************99873555555444443 PP

>> Tex_YqgF  Tex protein YqgF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   9.8e-06     0.022      18     126 .]     770     886 ..     763     886 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 9.8e-06
                 EE-TTS-EEEEEEE--ST.TT--HHHHHHHHHHHHHHTT--EEEEESSTTH..HHHHHHHHHHHHH......GGG--EEEEE--TTHHHHHHSHHHHHH CS
    Tex_YqgF  18 vvdetgkvletaviyphe.pkkkveeakkklkklvkkykveliaiGnGtas..reteklvaelike......eelkvkyvivsEaGaSvYSaselaaeE 107
                  v+++g++++   i  +  +k + ++ +++l++++++ + ++i i nG     ++  k ++e+i++      + +++ ++ v++  a  Y  se a++E
  CCD22619.1 770 FVNRKGDFVKDFKIVDNPfDKVNPQNFEDTLDNIIQNCQPNAIGI-NGPNPktQKFYKKLQEVIHKkqivdnKGHNIPIIYVDDEVAIRYQHSERASQE 867
                 577888887766665554255577888999999999999998888.5544300333344445554445555466789999******************* PP

                 -TTS-HHHHHHHHHHHHHH CS
    Tex_YqgF 108 fpdldvslrgavsiarrlq 126
                 fp+    ++  +++ar +q
  CCD22619.1 868 FPNKPPLIKYCIALARYMQ 886
                 ****************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1419  (0.0791455); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.48
# Mc/sec: 9158.84
//
Query:       CCD22620.1  [L=420]
Description: hypothetical protein NDAI_0A04640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-19   70.8   2.3    1.9e-19   70.8   2.3    1.8  2  Ctr            Ctr copper transporter family


Domain annotation for each model (and alignments):
>> Ctr  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   2.3     1e-23   1.9e-19       2     148 .]     133     288 ..     132     288 .. 0.71
   2 ?   -3.1   0.1      0.63   1.1e+04      75      75 ..     360     360 ..     320     400 .. 0.50

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 1e-23
         Ctr   2 lFhwstddt.ilfrsWritskgqlagsciglfllaifyeflralrerlerewdrhl..arsrekrkaassplvdssssseeeaea.............k 84 
                 + + +++++ +lf+++  +++g+ +g+++++++ +++y++l +++++le  w ++   + ++ + k+a +++ d+++++     +             k
  CCD22620.1 133 YLTSKYKNYpVLFQKLYADTRGKAFGIFLLVVVASFVYKALLFVSWCLEVHWFKKWdaSGKHTSIKNATENTRDEERDT-----EyfvenglemkplpK 226
                 5677899999****************************************88766633122222222222222222222.....123444565544333 PP

         Ctr  85 stsslskseakksvrttpe....qqlirallyvvqvllaYilMLlvMtyNvglflavilGagvGeflf 148
                   + l++   ++           +++ira+l ++ +++ Y+lML++M++   +++avilG+ + e++f
  CCD22620.1 227 LPNLLTDFMVTS------YtdllHDFIRAILIFCSTMIIYMLMLVAMSFILTYVFAVILGLTLAEVFF 288
                 333333333333......1345577***************************************9988 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.63
         Ctr  75 s 75 
                 +
  CCD22620.1 360 E 360
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1652  (0.0921412); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 2902.38
//
Query:       CCD22621.1  [L=1199]
Description: hypothetical protein NDAI_0A04650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-33  115.1   0.0    7.6e-33  113.6   0.0    1.8  1  Peptidase_M16    Insulinase (Peptidase family M16)
    3.1e-13   50.1   0.3    2.9e-05   24.2   0.0    4.6  4  Peptidase_M16_C  Peptidase M16 inactive domain
    9.9e-12   44.7   0.3      2e-11   43.7   0.3    1.6  1  Peptidase_M16_M  Middle or third domain of peptidase_M16


Domain annotation for each model (and alignments):
>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   1.3e-36   7.6e-33       3     131 ..      36     161 ..      34     179 .. 0.91

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 1.3e-36
                    EEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSB.BSSSCH.HHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGG......HHHHHHH CS
  Peptidase_M16   3 alesdppaktsavglvvdaGSryepkdlnGlAHllehmafkg.Tkkyps.nklaeeleklGgslnAttsrentvYyvevlskd......lekaldv 90 
                    +l+sdp+++ sa++l v++GS+++p dl+GlAHl+ehm++ + +k yp+   ++++l+k++g++nA+t+ e+t++y+ev++++      ++k++dv
     CCD22621.1  36 LLISDPKDTISACSLSVATGSHNDPADLPGLAHLCEHMVLAAgSKDYPNaGLYHSMLTKNNGTQNAFTTGEQTTFYFEVPTTQnsgeliFDKLVDV 131
                    7899***********************************9866******99********************************************* PP

                    HHHHHHSBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH CS
  Peptidase_M16  91 ladvfkaplleesevererkvvekeveavdaepekvveenl 131
                    ++++fk+pl+++  +++       e++a+++e+e     n+
     CCD22621.1 132 FSSFFKEPLFNPLLTNK-------EIYAIQSEHEG----NI 161
                    *****************.......********933....32 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.43   2.6e+03      80     119 ..     107     145 ..      67     165 .. 0.61
   2 !   24.2   0.0   4.8e-09   2.9e-05       6     161 ..     207     405 ..     203     419 .. 0.82
   3 !    8.2   0.0   0.00038       2.3       6     110 ..     500     613 ..     497     738 .. 0.90
   4 !   10.9   0.1   5.8e-05      0.35      17     176 ..     798     960 ..     782     966 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.43
                      EEEEEEEEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHH CS
  Peptidase_M16_C  80 hlslafegpskendeddlalavlntlLgggmesrLytnlr 119
                      + +++fe+p + +    l ++ l +++ +  + +L++ l+
       CCD22621.1 107 QTTFYFEVPTT-QNSGELIFDKLVDVFSSFFKEPLFNPLL 145
                      34455555555.5555555555555555555555555555 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 4.8e-09
                      HHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSH.....................................CSGSCTSSSSSGG CS
  Peptidase_M16_C   6 dlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaska.....................................ppakptgepltpa 62 
                       l +++ +++ +++m+l++ G  + ++l kl+   fgd+ a++                                       ++k+++ p  ++
       CCD22621.1 207 ALLDYFARNFYGSKMTLCVRGPQSVNTLTKLVVSKFGDIRANNGlkrskfgsissrlsissfqskerqptdleqynilkstWKPKYREAPCFTH 300
                      689***************************************99********************999999999999999995555555555555 PP

                      .GSSEEEEEEEESSSSSEEEEEEEEEECT....CTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEES.SCEEEEEEEEEECT CS
  Peptidase_M16_C  63 .tlkkppvvlkkldeeqahlslafegpsk....endeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyr.dsglfgisatadpe 150
                         + + ++++    +q+ l + f++ +k    ++ + +l  +   +l+g++ +++L   l   + ++++++a+ + ++ +s+ + +++ +++ 
       CCD22621.1 301 dSDSANMIFIRSN--KQSTLRFLFPVEDKfskfSSKTVSLFKNFWCELFGDETKGSLCYLLV-GKSWITDCFAYTSEFSsGSYGLILQFALTNT 391
                      1445555555555..59************777777777777777789*****9999999999.9**********88888777777777777777 PP

                      ...THHHHHHHHHH CS
  Peptidase_M16_C 151 ...nveevvevilk 161
                         nv+++++ +l+
       CCD22621.1 392 gwdNVDKIINIVLD 405
                      67777777776665 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00038
                      HHHHHHHHHSSGGGEEEEEEESS-HH.HHHHHHH.HHHTTSTHHSH........CSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEEC CS
  Peptidase_M16_C   6 dlkefykkfYrpenmvlaivGdvdhe.elvklie.kyfgdlkaska........ppakptgepltpatlkkppvvlkkldeeqahlslafegps 89 
                      +++ef k f + +n+ l++ G+ +    l ++i+ +yf  ++  +         + +k  + ++t + + ++ ++ +  + + ++l+  f+  s
       CCD22621.1 500 EFQEFLKVFMNRSNVFLFLLGNEKIAhSLRSIIRiRYFLLMQCMSLnilnviylRFPKLLSTQYTFQVPPPNAFIPPSCQ-DVTILQQLFLESS 592
                      89********************999988888888********9877********99999999999888888888888777.9************ PP

                      TCTHTTHHHHHHHHHHHHSST CS
  Peptidase_M16_C  90 kendeddlalavlntlLgggm 110
                      +++ +  ++l++lnt Lg+ +
       CCD22621.1 593 LKSRFSTFRLQLLNTNLGNVP 613
                      *9***************9984 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 5.8e-05
                      GGGEEEEEEESS-HH.HHHHHHH.HHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEES.....SSSSEEEEEEEEEECTCTHTTHHHHHHHH CS
  Peptidase_M16_C  17 penmvlaivGdvdhe.elvklie.kyfgdlkaskappakptgepltpatlkkppvvlkkl.....deeqahlslafegpskendeddlalavln 103
                      p  m l i+G++d   e+ ++++ ++  +l+ s+  +++ ++ +l++  l ++  +  k      d +++++++ + g+ +   ++   l ++ 
       CCD22621.1 798 PMYMNLLIQGNLDYGeEINNYLNtNLTHHLECSN-VKNEKQSSTLSTILLEPGSNFYAKYnghmdDPNNSIVYFIQTGLRT--NRRTVTLTYFT 888
                      4488888888888765777777755555666666.4444444455545555544444444466644377788887777777..66666666666 PP

                      HHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECT....THHHHHHHHHHHHHHHHHHTS-HHHH CS
  Peptidase_M16_C 104 tlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpe....nveevvevilkelrklkkeglteeel 176
                      +++++     L   lr+k++++y v+ +++  +  + +gi++t+ ++    ++e  ++   ++l++   + lte  +
       CCD22621.1 889 EYIMSL---TLVPDLRNKRQIGYAVFGGLRELT--STIGIHITVMSGispsDLEIKIDEYIAYLEETLLNSLTENQF 960
                      666666...7*******************9666..999999999888755655556666666666666666666655 PP

>> Peptidase_M16_M  Middle or third domain of peptidase_M16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.3   3.4e-15     2e-11      92     279 .]     560     778 ..     434     778 .. 0.73

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 3.4e-15
  Peptidase_M16_M  92 eeneeLhLPepNpFip...tdfslk..................kesesepakaPelirdtelvrlWykkD..dtFkvPkasvrlklrsplasks 162
                      +++  ++ P+pN Fip   +d+++                   +  +++  + P+li+ +++ ++W      d     k  +++++ +  +  s
       CCD22621.1 560 STQYTFQVPPPNAFIPpscQDVTILqqlflesslksrfstfrlQLLNTNLGNVPHLISRNSSYEMWALDNpiDASIDKKSIMSFEIFNRSMIPS 653
                      37779***********7775555557778888887777666553355599****************8765334445568899************ PP

  Peptidase_M16_M 163 prnavltelfvellkdslneylydAelAglsyslssskeg...lelsvsGYndklpvLlekvleklknf.....eikedrFevikekllrelkn 248
                      p+n++ +e+++++l++ ++ +ly+    g+sy++sss++g   l++++ G+++ +  +l++++++l  f     ++ ++++ +    l r+l +
       CCD22621.1 654 PENSINLEILSQILSTLISPQLYPSIRLGYSYEISSSPKGdiqLKVTIGGFSEGIISILDTIVKTLL-FimktpQFPSKELLRRSRVLVRNLYE 746
                      ***************************************664488899******************9.54566655555555555557777555 PP

  Peptidase_M16_M 249 .fklekpyqqarellsslleekawtleellea 279
                       +  ++  ++a+  l+ +le+++wtl+++lea
       CCD22621.1 747 aAASDNCVTLASMGLLIILERNMWTLQDRLEA 778
                      3889999999999****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 7703.01
//
Query:       CCD22622.1  [L=483]
Description: hypothetical protein NDAI_0A04660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-40  135.6   0.1    4.6e-39  133.1   0.1    2.4  2  Cyclin_N  Cyclin, N-terminal domain
    2.2e-32  111.7   0.0    7.1e-32  110.0   0.0    1.9  1  Cyclin_C  Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   0.1   5.1e-43   4.6e-39       1     126 [.     224     348 ..     224     349 .. 0.98
   2 ?   -1.9   0.0      0.28   2.5e+03      75      88 ..     394     407 ..     392     440 .. 0.64

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 5.1e-43
                 HHHHHHHHHHCHTS-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHH CS
    Cyclin_N   1 dilknlieqelkflpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlv 99 
                 di+ +l++ e+ +lp ++ l++++++n + R+il++wlv++++kf l petl+la+n++dRfl+k+ v+ dklqlvg++cL++A+K+ee+++p++++++
  CCD22622.1 224 DIFGYLHQLEISTLPAKENLKKHKNIN-QNRDILVNWLVKIHNKFGLLPETLYLAINIMDRFLCKELVQLDKLQLVGTSCLFIASKYEEVYSPSIKHFA 321
                 7999********************977.78********************************************************************* PP

                 HHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N 100 yitdeafteeeilemErliLetLnfdl 126
                   td+a+te+ei+e E+ iL+tL+f+l
  CCD22622.1 322 SETDGACTEDEIKEGEKFILKTLEFSL 348
                 *************************98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHH CS
    Cyclin_N  75 lvgatcLllAaKve 88 
                 l +a++++l+ K+ 
  CCD22622.1 394 LCAAAAMFLSRKML 407
                 78999999999884 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.0   7.9e-36   7.1e-32       1     117 [.     351     464 ..     351     466 .. 0.96

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 7.9e-36
                 --HHHHHHHHHCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC.---HHHHHHHHHHHHHHHHHHHGSS- CS
    Cyclin_C   1 ptplsFlrrflkaadasedselrtlakylleltlldydflsyppSliAaaalllarstlnspewtetlehyt.gyskedlkpcvelilellssapsskl 98 
                 p p++Flrr++ka+d+  d++ rtlak+lle++l+d +f++ +pSl Aaaa++l+r++l++++w+ +l hy+ gy+k++l p++ +i ++l   +   +
  CCD22622.1 351 PNPMNFLRRISKADDY--DIQSRTLAKFLLEISLVDFRFIGILPSLCAAAAMFLSRKMLGKGKWDGNLIHYSgGYTKSQLAPVCDMIMDYL--VSPIVH 445
                 89***********999..999**********************************************************************..778899 PP

                 -HHCCCCTCGGGCCCGGS- CS
    Cyclin_C  99 qavrrkyssskfhkvstls 117
                   ++rky+s++f+k+s +s
  CCD22622.1 446 DEFHRKYQSRRFMKASIIS 464
                 **************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1852  (0.103296); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3552.14
//
Query:       CCD22623.1  [L=408]
Description: hypothetical protein NDAI_0A04670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-41  140.6   0.6    1.9e-40  137.5   0.2    2.2  2  Cyclin_N  Cyclin, N-terminal domain
    5.9e-19   68.3   1.5    2.3e-18   66.4   0.2    2.2  2  Cyclin_C  Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   0.2   2.2e-44   1.9e-40       1     126 [.     139     267 ..     139     268 .. 0.97
   2 ?    1.0   0.0     0.037   3.3e+02      37     102 ..     275     341 ..     271     363 .. 0.67

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 2.2e-44
                 HHHHHHHHHHCHTS-STTCT.TCTSS..S-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HH CS
    Cyclin_N   1 dilknlieqelkflpkpdyl.dqqpe..lnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkle 96 
                 +i+++l ++el+ lp+++yl d++++  ++p+mRail+dwlvev+ kf++ petlfla+n++dRfls+++v+ +klql+++t+L++AaK+ee++ pkl+
  CCD22623.1 139 EIFTFLYQHELELLPSHNYLlDNSSKyfIRPSMRAILVDWLVEVHDKFQCYPETLFLAINIMDRFLSQNKVSMNKLQLLAITSLFVAAKFEEVHLPKLS 237
                 79******************966666779********************************************************************** PP

                 HHHHHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N  97 dlvyitdeafteeeilemErliLetLnfdl 126
                 ++ yitd+a +++ei+++E+ +L+ L f+l
  CCD22623.1 238 EYSYITDGAASKTEIKNAEMFMLTSLGFSL 267
                 ****************************98 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.037
                 HHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS.---HHHHHHHT CS
    Cyclin_N  37 wlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeis.ppkledlvyit 102
                 +l ++++  + + et  +a  +l+  ++ +s+   k  l+ + +++lA ++ +++ +   e l +++
  CCD22623.1 275 FLRRISKADSYNFETRNIAKCILEFSICYHSFITLKPSLLSTMAMYLARRIVNADqVLWNETLRHYS 341
                 5555555555556666666666666666677777788999999999999997776355555566666 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.062   5.5e+02      20      72 ..     190     240 ..     165     258 .. 0.75
   2 !   66.4   0.2   2.6e-22   2.3e-18       1     115 [.     270     387 ..     270     391 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.062
                 HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC CS
    Cyclin_C  20 selrtlakylleltlldydflsyppSliAaaalllarstlnspewtetlehyt 72 
                 +e++ la  +++  l + +  + +  l+A ++l++a +   ++   ++l +y+
  CCD22623.1 190 PETLFLAINIMDRFLSQNKVSMNKLQLLAITSLFVAAKF--EEVHLPKLSEYS 240
                 477888999999999999999999999999999999887..333345555555 PP

  == domain 2  score: 66.4 bits;  conditional E-value: 2.6e-22
                 --HHHHHHHHHCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHH..HS--S-HHHHHHC.--....-HHHHHHHHHHHHHHHHH CS
    Cyclin_C   1 ptplsFlrrflkaadasedselrtlakylleltlldydflsyppSliAaaalllarstl..nspewtetlehyt.gy....skedlkpcvelilellss 92 
                 p p++Flrr++ka+++  + e+r++ak++le +++ ++f+  +pSl+ + a++lar+++  ++  w+etl hy+ g+    ++   + c eli e +  
  CCD22623.1 270 PNPMNFLRRISKADSY--NFETRNIAKCILEFSICYHSFITLKPSLLSTMAMYLARRIVnaDQVLWNETLRHYSgGIdpllDETFQSYCKELISEIY-- 364
                 89***********887..889**************************************666677*********77777744444455666666666.. PP

                 HHGSS--HHCCCCTCGGGCCCGG CS
    Cyclin_C  93 apssklqavrrkyssskfhkvst 115
                  p++kl a   k++++++h+v +
  CCD22623.1 365 CPKTKLPALILKFKTPRCHSVYF 387
                 7899*************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3024.70
//
Query:       CCD22624.1  [L=415]
Description: hypothetical protein NDAI_0A04680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-84  281.5   0.1    7.6e-84  281.2   0.1    1.1  1  IF-2B     Initiation factor 2 subunit family


Domain annotation for each model (and alignments):
>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.2   0.1   4.2e-88   7.6e-84       1     281 [.      49     402 ..      49     403 .. 0.97

  Alignments for each domain:
  == domain 1  score: 281.2 bits;  conditional E-value: 4.2e-88
                 SS-SHHHHHHHHHHHHHHHHHHCCCSTHHHH............HHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHCCTTTSSHHHHHHHHHHHHHHHH CS
       IF-2B   1 kvrGspaiaiaalevllevikdaktskvaeL............keelrkaidlLkkarPtavslgnairrllkeiselksssdvkeakksliekikeli 87 
                 +vrG+paiai+++ ++l +i+  + +  ++             +++ ++++++L ++rPtav+l+na++++ +    l++s + k+++ sl e +k+li
  CCD22624.1  49 QVRGAPAIAIVGSLSVLLEIQLLQKESFTKSqwyynlsnwndvRSRFQDRLAFLLSSRPTAVNLSNALKEIST---TLNKSDNIKAFDRSLFEFVKRLI 144
                 79*******************999555555466677788777799****************************...789******************** PP

                 HHHHHHHHHHHHHHHTTC.........-TTEEEEEES--SH........HHHHHHHHHHTT.....................EEEEEEEEEXTTTTHH. CS
       IF-2B  88 keieeadekigdiaaeli.........kdgdtilTicnskt........vlevlraaakek.....................kkfkVivvEsrPrlqG. 147
                 ++++ +++k+gd++a+++         kd++++lTicn+++        +l+v+r++++++                     k+++V+++E+rP++qG 
  CCD22624.1 145 NDDLSNNKKMGDNGAKFLldtlekegfKDEFAVLTICNTGSlatsgygtALGVIRSLWEDSktksyptnikkkakttensqsKMVHVYPLETRPYNQGs 243
                 **********************************************************9999************************************* PP

                 HTHHHHHHHTTXEEEEEEGGGHHHHHHC...TESEEEEEXSEEETTSEEEEETTHHHHHHHHHHTTXEEEEEXXGGGBESTSSSGGGSSXXBEXTHHHH CS
       IF-2B 148 rltakeLvqagipvtlitdsavayvmse...evdkvivGAdrilenGaiankiGTsslAvlAkefnipvlvvaeslkfservqldedifieerdpeell 243
                 rlta+eLvq++ip tlitds+vay++++   ++++++vGAdri++nG++ankiGT +lA+l+k+f i+++vva+ +++++ +q++edi++eer ++e+ 
  CCD22624.1 244 RLTAYELVQEQIPATLITDSSVAYRIQTspvPIKAAFVGADRIVRNGDTANKIGTFQLAILCKQFGIKFFVVAPNTTIDNITQTGEDIIVEERHADEFR 342
                 *****************************999******************************************************************* PP

                 EETTEESSTT......................TEEEEEBSEEEEEGGGXSEEEETTEEEX CS
       IF-2B 244 nitgeriaee......................elkvvnpafDvtPpelItliITevGvlp 281
                  +tg+ i  +                      +++v+npafD+t + +I++i+Te+Gv++
  CCD22624.1 343 HVTGTAIDLNtnkpvlnekeepvsakvgisppQINVWNPAFDITTHAFIDGIVTEKGVFT 402
                 ******987799**********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3031.16
//
Query:       CCD22625.1  [L=2495]
Description: hypothetical protein NDAI_0A04690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.8e-138  461.0   4.1     9e-138  460.1   4.1    1.5  1  Fmp27_WPPW    RNA pol II promoter Fmp27 protein domain
    5.5e-98  328.9   0.4    5.5e-98  328.9   0.4    3.0  3  Apt1          Golgi-body localisation protein domain
    6.6e-47  159.5   0.3    2.3e-46  157.7   0.3    2.1  1  Fmp27_GFWDK   RNA pol II promoter Fmp27 protein domain
    8.3e-42  142.7   1.5      4e-41  140.5   1.5    2.3  1  DUF2405       Domain of unknown function (DUF2405)
    1.1e-20   74.3   2.5    2.5e-20   73.1   0.1    3.1  3  Fmp27_SW      RNA pol II promoter Fmp27 protein domain
  ------ inclusion threshold ------
      0.082   11.5   2.8       0.21   10.1   2.8    1.7  1  FapA          Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  460.1   4.1    3e-141    9e-138       1     483 []    1453    1953 ..    1453    1953 .. 0.94

  Alignments for each domain:
  == domain 1  score: 460.1 bits;  conditional E-value: 3e-141
  Fmp27_WPPW    1 GlKakvdsfklDLHQRreelttvnkklnkqkkvsklkinegeidlksaDiRavsasfketsveeikessl..sslss.eqssessesdlsrfeipdn 94  
                  GlK+++ s+k+DLHQRr++lt++n++ln++k+v+klk+++geid+++aDiR++ ++f++++v+ei +  +  + l+s e+    s+    +     +
  CCD22625.1 1453 GLKGRFGSLKIDLHQRRIKLTHQNERLNRSKPVWKLKMSTGEIDCAEADIRIIATTFDKNAVKEIFNIGNypTILQSlED----ST-PIRDTLNLLQ 1544
                  9****************************************************************998885555544333....22.2222233568 PP

  Fmp27_WPPW   95 DlsWiDmdDFveldwiepeesnp.kikilPLaysPrftYfRqtdegdkiqvdekris...pFgnektHdCilgkendpervqkelleeRleeleeqi 187 
                  + +W+D dD+v+l++i+ ++s p k++++PL+ysPr++YfR+++++        +++   pFg e++H+C++g+ n+per+q++l+++Rl+e+e++i
  CCD22625.1 1545 ESDWYDQDDYVDLNQISSNSSLPlKLEAIPLLYSPRISYFRKINDN--------GYTvayPFGGENSHRCLIGQ-NHPERTQEKLAQQRLNEIETEI 1632
                  99*******************************************9........333445**************.********************** PP

  Fmp27_WPPW  188 ekleekleelelkseke..deelkeeieelekeikelkeklefletlledlkeseesse......................eeeskskelsaastse 260 
                  ek++e+l ++ ++s+    ++e  ++ ++l+ e+kel+++ ++++++l+dlk see+ +                      + +s ++ l +++t e
  CCD22625.1 1633 EKVQENLAKMADNSSLPskNKEALKRKKNLNLELKELHHRFHIVHNILKDLKLSEETPDsisasdssrssindlqyipsevSGTSVNSCLLRTNTVE 1729
                  **********99998877899999999****************************99889********************9999999********** PP

  Fmp27_WPPW  261 sfseldelasseesaseFknRFiihniqlkwnnslRnillrylhqvsqrrgfvyymsrkavkfiedlveeqekskkkkskekeesseksssedeesn 357 
                  sf ++++ as+ +++s+F+nRFiihniqlk+++++R++ll+y++ +++rr++ y+m++k++ ++++++++  ++ k++     e+ ++  ++++ sn
  CCD22625.1 1730 SFVSMRR-ASTVQLESTFDNRFIIHNIQLKIDKKIRDHLLEYTTTMQERRSMEYAMTYKSMGILKKVLSNVLNHVKTS----VEDPDSMGDDNDISN 1821
                  *******.*****************************************************************88863....345556667777999 PP

  Fmp27_WPPW  358 eeleerieelledvkkaeefeaqnsylvrLIaPQiqlqSeknpksvvlvtakdielkivsi.....edkervsddvsglverRfgvllddaqfFvlk 449 
                   e++e++ee+++++++ e+f+  ++yl+rLI+PQ+q+ S ++p+++++++a+d+e+ i++i     ++++r++ dv+++ e+R++++++d+q+F+l 
  CCD22625.1 1822 IEFIEQFEEIIREIPN-ESFDSVDNYLIRLISPQVQISSPCEPRATIILAARDVEVGIIDIiqvigNSGKRIALDVDTVAETRYCAVSKDIQLFTLF 1917
                  **************99.******************************************************************************** PP

  Fmp27_WPPW  450 kkdfs.kksesllsgnkyGaekgss.WpPWvplEvc 483 
                  ++d+  +  +sl+ +n+yGa+k+s  WpPW+p+E+c
  CCD22625.1 1918 QDDILlSPINSLHWNNNYGADKNSGkWPPWIPFEMC 1953
                  *****9******************99*********9 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   2.5      0.44   1.3e+03      93     359 ..    1625    1682 ..    1601    1810 .. 0.58
   2 !  328.9   0.4  1.8e-101   5.5e-98       3     478 .]    1966    2411 ..    1964    2411 .. 0.85
   3 ?   -4.4   3.9       2.1   6.4e+03     345     385 ..    2439    2483 ..    2420    2489 .. 0.45

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.44
        Apt1   93 leglpemvkklqerirqleeikehfqieskyldkegwedrlklekelaeceeeLfllmkaittsqlrkkekskskslsaalrwsisadeivWhlldd 189 
                  l++++++++k qe++ ++ + ++  + +++ l++++      l+ el e                                                
  CCD22625.1 1625 LNEIETEIEKVQENLAKMADNSSLPSKNKEALKRKKN-----LNLELKE------------------------------------------------ 1668
                  3333333333333333333332222222222222221.....2222222................................................ PP

        Apt1  190 dgeplaelqLknaeydrtdnsdgsnsnrleigslqglNllpnaiypellspyedepedkkkpmlrvywkmlepvgGipvlehfevnlfPlkiqLeee 286 
                                                                                                                   
  CCD22625.1    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

        Apt1  287 vgkklfeYiFPkrdsdaqeasmvkessseeddesdeesessssssssssssassssssssrssslelrlkpt............s 359 
                                                                                                      +
  CCD22625.1 1669 -----------------------------------------------------------------------LhhrfhivhnilkD 1682
                  .......................................................................12233333333220 PP

  == domain 2  score: 328.9 bits;  conditional E-value: 1.8e-101
        Apt1    3 qrtsaslrydkyntlrlkyndesvsseeeeeekrvdelsvefpklratanSsQYyalydivtdLLlysePlekerserlekimla.sdfsdleglp. 97  
                  +r s++++ + +n+l+++++  ++        +  +++++ fp l +t++S+QY+a++ i +dLL +   + +e+ e+l+ki++a + +++l++ + 
  CCD22625.1 1966 RRRSMFCTLTVPNPLYISDKGITD-------ISTDSKFRMGFPGLILTSTSQQYCAVFAICQDLLSFGS-SFDEKVEKLSKILFAeEVRNNLDKFDa 2054
                  799*****************9855.......999***********************************.***************888888*****9 PP

        Apt1   98 emvkklqerirqleeikehfqiesk.yldkegwedrlklekelaeceeeLfllmkaittsqlrkkekskskslsaalrwsisadeivWhlldddgep 193 
                  + v++lq+++r+l+++++ ++i+++ +++++++    +l+ e+++   +L llm+ai++        s ++ ++++lrw + +d++vW+l++++ +p
  CCD22625.1 2055 SIVTNLQNNVRDLYYTRSFLKINDDrLFHRNSQ----RLNFEIQTNVLKLALLMTAIKKIMIWLI--SWKRVPQKKLRWLVGTDDLVWELYNEKTQP 2145
                  99***********************55555555....9**********************98887..99999999********************** PP

        Apt1  194 laelqLknaeydrtdnsdgsnsnrleigslqglNllpnaiypellspy.edepedkkkpmlrvywkmlepvgGipvlehfevnlfPlkiqLeeevgk 289 
                  +++++L +++++r++ns g nsn+++i+sl+++N++ ++ y el+ p+ ++ ++dk+ p+++++w +++p+gGi+ le++ v+l+P+ +++++ + +
  CCD22625.1 2146 FITISLGSSTFSRSQNSAGFNSNSITISSLRCFNQQRDPAYVELIVPFeSHIEYDKDIPLVQIFWAQGPPIGGISNLEKMVVSLQPIVFKMDHVTSE 2242
                  ************************************************98899******************************************** PP

        Apt1  290 klfeYiFPkrdsdaqeasmvkess...seeddesdeesessssssssssssassssssssrssslelrlkptsstsssssse.ssssssskkrssee 382 
                  kl++Y+FPk ds+ +       +s    +ed+ s   ++ ++s     ++ + + +s ++ ++  +  l+  s ++ s+s++ +s + ++k++++ +
  CCD22625.1 2243 KLMNYLFPKIDSNVEIP-----ESyilGNEDSVSP-IISRNGS----YTKLSPALASAKQMRDVDSWDLS--SIHNLSNSPTpNSPTLVRKEPTRIP 2327
                  ***********988777.....2233322222222.2222222....22222222222222222222222..3333333333034444444555555 PP

        Apt1  383 sslessaservkssrasddleemksRaskymtfayikipsvvlclSYkgkkeknledvhdlvfrlPtleyrnktwsnldLalalKkdvikallsht 478 
                  ss+             +++++em++R+s y+++ +i i+ ++++++Ykg  +k l+dv+dl +++P ley nk ws+++++ alKkdvik++l+h+
  CCD22625.1 2328 SSIF-----------SKESIDEMVKRSSVYFNVGEITIKRTTMSVCYKG-AHKLLTDVNDLIVNVPVLEYYNKLWSRDEFFAALKKDVIKIVLQHL 2411
                  5555...........78*******************************5.5669*****************************************5 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 2.1
        Apt1  345 ssrssslelrlk....ptsstssssssessssssskkrsseessl 385 
                  +s+++s+e+ l+    p+s +s+ s s+s++s+s++ +s ee++ 
  CCD22625.1 2439 KSDAESEEKHLRdkryPSSFESRPSISSSRKSNSHQLDSVEEDKD 2483
                  333333333333112233444445455555555555444444433 PP

>> Fmp27_GFWDK  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   0.3   7.8e-50   2.3e-46       1     156 []    1089    1238 ..    1089    1238 .. 0.98

  Alignments for each domain:
  == domain 1  score: 157.7 bits;  conditional E-value: 7.8e-50
  Fmp27_GFWDK    1 DYplplvhvpseqskslkalklkgdlviaEelveseeslRkievplvpsaeaeee...esfysvtvertltsvKlysdlevdiesseptrltWGks 93  
                   DYp+p++++p        ++ ++gd+v+aE++  +  +l +++vp+vpsa++e++   +s+y +++ rt++svK+y++l+ ++ ss+p ++tWGks
   CCD22625.1 1089 DYPIPVISLP--------DTYTTGDVVLAEKM-PEVFALNTVYVPFVPSATKESYaktNSIYGSHIIRTINSVKTYFNLKSNVISSTPASVTWGKS 1175
                   9*********........999***********.8889**************999888899************************************ PP

  Fmp27_GFWDK   94 yqpaiqqvmqaldkftkppvDpSpklgfWDKirllfhgkielkvkkdgelelalkgsrdPYki 156 
                   +qp+++++m+++d +tkp++DpS+klgfWDK+r+l+hg++ ++++k++e++l++kgs+dPYki
   CCD22625.1 1176 LQPGYESLMMWFDFLTKPKLDPSQKLGFWDKFRFLVHGTWIYELSKQSEFHLNIKGSNDPYKI 1238
                   *************************************************************97 PP

>> DUF2405  Domain of unknown function (DUF2405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5   1.5   1.3e-44     4e-41       2     149 ..     799     946 ..     798     949 .. 0.92

  Alignments for each domain:
  == domain 1  score: 140.5 bits;  conditional E-value: 1.3e-44
     DUF2405   2 klirlyvesptvkk..vwarllsikdlrvdlrekkseeeksidveteairlriPhkfvvykiidniittvKaikqlkhrfktskneevlepkeekpkkl 98 
                 +li+ +v+s+++k+  v + l++++d++vd+++     +++++++t+ i+++++++f +y i+dn+it++K++kqlk +f++ +++++l+p +e p+kl
  CCD22625.1 799 RLISSFVKSVYIKNskVRVALMTVSDFEVDIKS--LLGKEELNISTSLIQFHTEYHFRFYLIVDNFITMFKSFKQLKLAFSSLSEFQRLYPLPETPIKL 895
                 678899*******95555556666667666666..9*************************************************************** PP

     DUF2405  99 PkiklkskrllfeleDDpFEaeLglIyriGlvEqkeRlakeeaFeekvkki 149
                 P+i+l+++++l+++e+DpFE+eLglI+++Gl+Eq+eRl+k+++ e++++k+
  CCD22625.1 896 PTIELTAEAVLIDIEEDPFEQELGLILKVGLLEQRERLQKLKELETRLAKL 946
                 **********************************************99987 PP

>> Fmp27_SW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         6   1.8e+04      70      94 ..     492     516 ..     491     517 .. 0.89
   2 !   73.1   0.1   8.3e-24   2.5e-20       3     103 .]     980    1071 ..     978    1071 .. 0.95
   3 ?   -3.1   0.4       4.4   1.3e+04      26      67 ..    1630    1681 ..    1619    1691 .. 0.46

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6
    Fmp27_SW  70 dleldkpsfpledlpdFlhdvGkGv 94 
                 dl+l k s + ++  ++++ vG  +
  CCD22625.1 492 DLTLYKTSSREQNSSNYIKIVGTNM 516
                 799999************9999866 PP

  == domain 2  score: 73.1 bits;  conditional E-value: 8.3e-24
    Fmp27_SW    3 erLqehnsksWirri.kaakekqkeeikeirerlygkeelskedkdknekilplpkrppLlrltiedldleldkpsfpledlpdFlhdvGkGvPkdt 98  
                  ++L eh+s+sWi r+ ka++++q +++  +++  + +e++          +++ p++++ ++l++e+ldl l+kpsfp++d+++Fl+++GkG+P d+
  CCD22625.1  980 QKLLEHFSTSWIARYrKAKLTFQGSKCYIRKNVKLMEEYY----------LFSSPSSSTTANLVVENLDLRLQKPSFPIDDYMNFLYKYGKGLPSDM 1066
                  89*************9999999*99999998888888887..........99********************************************* PP

    Fmp27_SW   99 eYslL 103 
                   ++lL
  CCD22625.1 1067 LFTLL 1071
                  ***98 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.4
    Fmp27_SW   26 eeikeirerlygkeelskedkdknek..........ilplpkrppLlrltie 67  
                  +ei++++e+l +  ++s+ +++++e           + +l++r ++++ +++
  CCD22625.1 1630 TEIEKVQENLAKMADNSSLPSKNKEAlkrkknlnleLKELHHRFHIVHNILK 1681
                  4455555555555553333333222122222222225555555555555555 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.8   7.2e-05      0.21     325     411 ..    1605    1683 ..    1586    1704 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.2e-05
        FapA  325 eievgldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk 411 
                  +  +g ++pe  ++ k  +++l+e+e e+ek++++++k+ + +          ++ k++l+ k++l+ el+el+++++ + + l++ 
  CCD22625.1 1605 RCLIGQNHPERTQE-KLAQQRLNEIETEIEKVQENLAKMADNSS-------LPSKNKEALKRKKNLNLELKELHHRFHIVHNILKDL 1683
                  55668885555555.89999***************999999443.......447788888889999999999999998888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.29u 0.31s 00:00:01.60 Elapsed: 00:00:00.49
# Mc/sec: 15274.65
//
Query:       CCD22626.1  [L=317]
Description: hypothetical protein NDAI_0A04700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-55  187.2   8.2    1.2e-46  159.3   2.9    2.0  2  RRG8         Required for respiratory growth protein 8 mitoch
  ------ inclusion threshold ------
      0.012   15.1   0.0      0.018   14.5   0.0    1.2  1  CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP bindin


Domain annotation for each model (and alignments):
>> RRG8  Required for respiratory growth protein 8 mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.3   2.9   1.4e-50   1.2e-46       1     195 [.       8     193 ..       8     199 .. 0.93
   2 !   31.2   0.2   1.5e-11   1.4e-07     191     279 .]     227     314 ..     201     314 .. 0.85

  Alignments for each domain:
  == domain 1  score: 159.3 bits;  conditional E-value: 1.4e-50
        RRG8   1 lkkLlvkrvdktkrvlkkklldrvpdvesPLvtnFekWsgKrrkLylkdeeqvvkqvgledfeLknNlfaqLLasPmRsdkisklkvpkelLiqlKlrk 99 
                 +k+Ll+   d++   +k+++ +    v   L+t Fe+WsgKr+kLy++ +++++ +v  ++f+L++N+fa++L+sPmR+dk+s++k+pkelLiql + k
  CCD22626.1   8 YKRLLITSEDCSIDKMKQPISPS---V---LLTGFERWSGKRKKLYFRSNNEITSKV--SNFNLRENIFANILSSPMRLDKVSRVKLPKELLIQLNITK 98 
                 7999**99999999999999554...5...**********************76665..46************************************** PP

        RRG8 100 teneadgkllklvpvveekkgkksSYVanSkailkkkksaatkwvPiavlqssiryisskdvavdkstfleeyeeqllsllkerlssllsvsgssv 195
                  +  + +k+lkl + v++ +  ksSYV+n  + l+k  ++a++w+Pi    ss  y++ +dv +d++ +l+ey+e ll+++ ++l   +++s+ s 
  CCD22626.1  99 HHTISTKKPLKLSAAVQNVGEGKSSYVLNNYKELSKLFKSAASWLPIPSSSSSNNYFNISDVHIDQN-LLTEYKELLLKTVSDGLLGCVNTSNGSD 193
                 *****************************************************************86.6789*************99999888775 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 1.5e-11
        RRG8 191 sgssverveledrDVvvtydkdnandielrkvksigkkdltvivlNlkvlkepelealvnklrnheegivlkvskdeelikllYrllaf 279
                   +  ++  + + ++++ty++ n+ +i l+k   + k + + +v+Nl+    pel+++  +lr  +  ivl+   +++lik ++++l f
  CCD22626.1 227 LAKQENQTSQCQTEILITYEEGNKDAIYLKKQTDETK-NGMLTVFNLGSTGTPELKKIATNLRLDKAPIVLNRMYNKDLIKNIFKMLSF 314
                 44445555556789****************6666666.9999******************9**************************98 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   2.1e-06     0.018      50     166 ..     119     245 ..      98     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.1e-06
                  TTTTEEEESSHHHHHHHHHHHHH........HHHHHHSTS-EEEEE-.-SSSEEEEEEEEEETTS-EEEEEE.EEECCECTCCCCEEEES-SS--HHH CS
  CPSase_L_D2  50 GGkGmrvarneeelaelvkkala........eakaafgnkqvlveks.lkgpkeiEvevlrDakgnvitvce.renslqlrtqkvievAPsqtLtdee 137
                   Gk + v +n +el++l+k+a +         ++  f  + v +++  l+++ke+ ++ ++D    ++   +  +n+ +l  ++ +e A +  L++ e
   CCD22626.1 119 EGKSSYVLNNYKELSKLFKSAASwlpipsssSSNNYFNISDVHIDQNlLTEYKELLLKTVSDGLLGCVNTSNgSDNLQNLGLKEHVERAQASKLSRPE 216
                  467788999999999999987642222211156667999*****9852799*************9999887747899999****************** PP

                  HHHHHHHHHHHHHHHT-EEEEEEEEEEET CS
  CPSase_L_D2 138 rqalreaavkvvrevgvvgagtveflldp 166
                   ++ ++   +++++ + ++++  e l+  
   CCD22626.1 217 KNEFETGIKTLAKQENQTSQCQTEILITY 245
                  ******999999*99999***99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2355.47
//
Query:       CCD22627.1  [L=1013]
Description: hypothetical protein NDAI_0A04710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1013 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1209  (0.0674327); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 6522.83
//
Query:       CCD22628.1  [L=328]
Description: hypothetical protein NDAI_0A04720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-32  112.5  18.1    2.1e-32  112.5  18.1    1.6  2  TRAM_LAG1_CLN8  TLC domain
  ------ inclusion threshold ------
       0.69   10.2   0.0       0.69   10.2   0.0    2.9  4  Orf78           Orf78 (ac78)


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.27   2.4e+03      75      91 ..      53      69 ..      39      83 .. 0.71
   2 !  112.5  18.1   2.3e-36   2.1e-32       3     197 ..     118     311 ..     116     312 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.27
  TRAM_LAG1_CLN8 75 emliHhiitlvllvlsy 91
                      +++hi++l++ ++++
      CCD22628.1 53 ISIFYHIVYLIGKYIIF 69
                    45667777766666555 PP

  == domain 2  score: 112.5 bits;  conditional E-value: 2.3e-36
  TRAM_LAG1_CLN8   3 dervvslvqyllstvfglivlssspelwegy...perilgathfllkayyllalgYfiydllvlllyekkrkdfvemliHhiitlvllvlsyvrn 94 
                     + +++sl+q+++++++++ +l   +   e y   + ri+ +++   ++++++a+gYf++d +++l+y         +++H ii++v++++++ ++
      CCD22628.1 118 SIHLISLLQSIVVLYLSFDFLLCPERSSEPYqtsESRIF-GSNRETQVICIYAIGYFLWDTIISLFYSST-----AFVLHGIISTVVFTIGL-KP 205
                     5799*************9877777633333355477777.55888888************9999997754.....59***************.** PP

  TRAM_LAG1_CLN8  95 lgrvglvvlllhelsdpflnlrkilsylkkk.sks..sklvlfngllfllsFfvcRlvllpylillsildvaklslstap...lwlpliflilll 183
                     +++++++v+l++els+pfln+r++ ++l    s +   + +l+n+l+++++Ff++R+ +++++i + i+d+++++    p   +w  +i++ +++
      CCD22628.1 206 YIQYYAPVFLMFELSNPFLNFRWFGIKLFPSnS-KigDTFLLINNLILMIMFFFARIAWGWFQIGKLIYDYYQVRND--PsflFWDSAIIVSGNF 297
                     ****************************66652.1345678888****************************96665..3459************ PP

  TRAM_LAG1_CLN8 184 vLqllnlyWfyliv 197
                     vL +ln++Wf+ +v
      CCD22628.1 298 VLDILNVIWFSTMV 311
                     *************8 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.4      0.68   6.1e+03      74      86 ..      50      62 ..      35      69 .. 0.60
   2 ?   10.2   0.0   7.7e-05      0.69      24      94 ..      80     145 ..      72     155 .. 0.51
   3 ?   -1.7   0.1      0.39   3.5e+03      77      87 ..     164     174 ..     162     177 .. 0.84
   4 ?   -4.2   1.1         2   1.8e+04      78      86 ..     249     257 ..     243     259 .. 0.46

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.68
       Orf78 74 vcvlvllyviyYf 86
                ++ + ++y i+Y 
  CCD22628.1 50 IVFISIFYHIVYL 62
                3334444555553 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 7.7e-05
       Orf78  24 ndldnddndkaenkkekksaaeknditekesnaaekaqalnill....isllavvcvlvllyviyYfvilrerqk 94 
                 ++ d++++++         +a k++ +++ ++++++++ +n+l+    i l++++  +v+ly+ + f++  er++
  CCD22628.1  80 DQQDQEKQEA---------IAGKKNDNKTPHHHHHHKKRYNALViqssIHLISLLQSIVVLYLSFDFLLCPERSS 145
                 3322222222.........22222222222223444444444441122467888888888998888888777655 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.39
       Orf78  77 lvllyviyYfv 87 
                 ++ +y+i Yf+
  CCD22628.1 164 VICIYAIGYFL 174
                 5779*****96 PP

  == domain 4  score: -4.2 bits;  conditional E-value: 2
       Orf78  78 vllyviyYf 86 
                  l+ +i++f
  CCD22628.1 249 NLILMIMFF 257
                 344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2406.68
//
Query:       CCD22629.1  [L=224]
Description: hypothetical protein NDAI_0A04730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-14   53.3   0.7    3.5e-14   53.3   0.7    2.3  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.7     2e-18   3.5e-14       2      66 .]      23      85 ..      22      85 .. 0.93
   2 ?    0.2   0.9     0.072   1.3e+03       3      27 ..     101     153 ..      88     214 .. 0.58

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 2e-18
                     -HHHHHHHHHHHHHHHHHGGGS-H..HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf  2 lPnaiTllrlllsvlailllltyyplvlailllliasltDalDGklARrlnqvstlGkllDslaD 66
                     +Pn+i ++r+l +++++++  ++++ v+  l++ +++l+DalDG +AR++nqvs+lG++lD + D
       CCD22629.1 23 IPNQIGYMRVLTAIISFFT--MANHPVMTGLVYTVSCLLDALDGTMARKYNQVSSLGAVLDMVTD 85
                     8***********9999974..488889***********************************998 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.072
                      HHHHHHHHHHHHHHHHHGGGS-H................................. CS
  CDP-OH_P_transf   3 PnaiTllrlllsvlailllltyyp...............................l 27 
                      Pn+  +l +l+s+        y++                               +
       CCD22629.1 101 PNLCVILQILISLDIS---SHYMHmyatlssggsshkqvgkessrllhlyytrrdV 153
                      5555555555533222...2223333444444444444444444444444444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1698.63
//
Query:       CCD22630.1  [L=1063]
Description: hypothetical protein NDAI_0A04740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.6e-237  788.9   0.1   4.1e-236  785.0   0.1    2.3  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
    1.5e-30  106.1   1.7    6.2e-30  104.2   1.7    2.1  1  Anticodon_1      Anticodon-binding domain of tRNA
    1.3e-14   53.7   0.4    1.2e-07   30.8   0.1    4.3  3  tRNA-synt_1g     tRNA synthetases class I (M)
      3e-09   36.7   7.0    3.7e-07   29.8   0.0    3.7  3  tRNA-synt_1_2    Leucyl-tRNA synthetase, Domain 2
  ------ inclusion threshold ------
      0.015   15.5   7.2      0.015   15.5   7.2    3.2  3  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
       0.21   10.9   9.1       0.97    8.7   0.0    3.6  4  tRNA-synt_1e     tRNA synthetases class I (C) catalytic domai
        9.5    6.5   7.9       0.51   10.6   1.5    2.2  2  Lge1             Transcriptional regulatory protein LGE1


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  785.0   0.1  1.6e-239  4.1e-236       2     602 .]     114     739 ..     113     739 .. 0.99

  Alignments for each domain:
  == domain 1  score: 785.0 bits;  conditional E-value: 1.6e-239
  tRNA-synt_1   2 lyekWeeedvfkkelekeke.kke..filvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklg 96 
                  +y++W ++++f++e++++ + k+e  f+++++PP+vtG+lHiGhal+ +++d++iry+rmkGk+vl++pG+DhaG+a++++vek+++akekk+r+++g
   CCD22630.1 114 WYDWWVKSGFFEPEFTEDGKiKPEglFCIPAPPPNVTGALHIGHALTISIQDTLIRYNRMKGKTVLFLPGFDHAGIATQSVVEKQMWAKEKKTRHDYG 211
                  9***************9999888899************************************************************************ PP

  tRNA-synt_1  97 reefrekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkk.......... 184
                  r++f++kv+ewk+ey+++i++q+++lG+s+D+ re++Tld++l+++v+e+fvrl+d+g iyr+++lvnws+kl+ta+s+lEve+kd+k          
   CCD22630.1 212 RTDFVNKVWEWKEEYHNRIKNQIQNLGASYDWTREAFTLDPKLTNSVVEAFVRLHDDGTIYRAARLVNWSVKLNTAISNLEVENKDVKgrtllsvpgy 309
                  ************************************************************************************************** PP

  tRNA-synt_1 185 ......dalihvafpladkee.vklviaTTtPeTllgdtavavnpeldyvitkeklilaeallkslvkkesekkiledergkeLegkevelplvnrki 275
                        ++l+++a+p+ad+e+  kl+iaTT+PeTl+gdta+av+p+                               d r+++L+gk+v++p+  rki
   CCD22630.1 310 dekvefGVLTSFAYPVADSETdEKLIIATTRPETLFGDTAIAVHPD-------------------------------DARYTHLHGKFVQHPFLPRKI 376
                  ****************98876689**********************...............................9******************** PP

  tRNA-synt_1 276 piiad.dyvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteea.aefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkp 371
                  pii d + vd+e+GtG+Vki+Pahd++Dy++gk++nle+inil++dg l+e++ +e+eg+k+fdarkkv+eelk+kgl++ +e++e+++p+c+rs+++
   CCD22630.1 377 PIILDkEAVDMEFGTGAVKITPAHDQNDYNTGKRHNLEFINILTDDGLLNENCgPEWEGMKRFDARKKVIEELKKKGLYIGQEDNEMTIPTCSRSGDI 474
                  *****99*********************************************989******************************************* PP

  tRNA-synt_1 372 iiyrateqWfvrvkeladaalkave..kvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkalek 467
                  i++ +++qW+v + ++a++a+kav+  +++++p s+e++y++wleniqdWciSRq+wWGhr+p+++ k ++++   ++ +++vagr+ eea+kka++k
   CCD22630.1 475 IEPLLKPQWWVAQGDMAKEAIKAVRngDITITPRSSEAEYFHWLENIQDWCISRQLWWGHRCPVYFIKVEGQENDPNDGSYWVAGRNIEEAQKKANAK 572
                  *************************999***********************************************9*******************999 PP

  tRNA-synt_1 468 eakdklkkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmS 565
                      k+     +le+dedvlD+WFsSg+wpfstlg+pe+ t+++++f+p++ml++G+Di+++Wv+r+ill+l+ltgs Pfkev++h+lvrd++GrKmS
   CCD22630.1 573 FPDTKF-----TLEQDEDVLDTWFSSGLWPFSTLGWPEK-TKDMENFYPFSMLETGWDILFFWVSRMILLGLKLTGSIPFKEVFCHSLVRDAQGRKMS 664
                  999999.....****************************.********************************************************** PP

  tRNA-synt_1 566 KslgNvidpldvik.....................................kygadalRltli.lsdvgrdinls 602
                  KslgNv+dpldvi+                                     ++g+da+R++l+ +++ grdinl+
   CCD22630.1 665 KSLGNVVDPLDVISgiklddlhakllsgnldprevekaklgqkesypngipQCGTDAMRFALCaYTTGGRDINLD 739
                  ************************************************************************986 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   1.7   2.4e-33   6.2e-30       1     147 [.     784     930 ..     784     935 .. 0.88

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 2.4e-33
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqr.eeeelg 97 
                  ++wil++l  ++k+v+ ++++ +f +  sa+yef w  +cd+y+e +k  ++  ++e++++++ +l++++++ lrl++PfmPf++Ee+wqr  +++ +
   CCD22630.1 784 EKWILHKLTTTAKSVNSDLDKRDFLNSTSAIYEF-WYMVCDVYIENSKYLIQEGTPEEQKSTKDTLYTLIDNALRLIHPFMPFVSEEMWQRlPKRSSE 880
                  69*******************************7.889*************9988888855******************************9444557 PP

  Anticodon_1  98 kkesimlaewpe.kaeelekeleeeevellkeivkairklrselkikpsse 147
                  k  +i++a++p   +e+ ++++  +++el+ ++ k +r+l +e +i ++ e
   CCD22630.1 881 KAITIVKASYPVyIKEYDNEDA-VNAYELVLDVTKEARSLLAEFNILKNGE 930
                  789********75444443333.689**************99999998876 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1   4.8e-11   1.2e-07       5     129 ..     144     287 ..     140     297 .. 0.66
   2 !    8.6   0.1   0.00028      0.71     167     238 ..     466     537 ..     456     549 .. 0.68
   3 !    8.7   0.0   0.00025      0.63     313     350 ..     647     685 ..     624     698 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 4.8e-11
                   E--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHH......HHHTTS-...........HHHHHHHHHHHHHHHHHHTT-- CS
  tRNA-synt_1g   5 talpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielk......Aekegvt...........peelvekvheeikelfkklnis 84 
                   ++ p ++g+lH+Gh+l++ + D ++Ry+r++g+ vlf+ g D+ G++++        A+++++            + e  e++h++ik++ ++l+ s
    CCD22630.1 144 APPPNVTGALHIGHALTISIQDTLIRYNRMKGKTVLFLPGFDHAGIATQSVvekqmwAKEKKTRhdygrtdfvnkVWEWKEEYHNRIKNQIQNLGAS 240
                   6667899**************************************9987651111114443332111111111112233456777788888888888 PP

                   -SEEEE..TTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEE CS
  tRNA-synt_1g  85 fdkygr..ttseehkelvqeifkklkekgliyekeieqlycpkderf 129
                   +d   +  t + + ++ v e f +l++ g+iy+ +  + +++k ++ 
    CCD22630.1 241 YDWTREafTLDPKLTNSVVEAFVRLHDDGTIYRAARLVNWSVKLNTA 287
                   87544333566666777777777788888888777776666666655 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00028
                   ..........EEE.EEEEEE-GGGGHHHHHHHH.HH-TT.SHHHHHHHH.HHHHT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 167 pksaisgskpevketehlffklskfekklkewieeeeke.leenvkkivkewlkegLkdlaisrdldwGipvP 238
                   p+++ sg+  e   + +++    +++k+  + +++ + + ++++ +    +wl++ ++d++isr+l wG + P
    CCD22630.1 466 PTCSRSGDIIEPLLKPQWWVAQGDMAKEAIKAVRNGDITiTPRSSEAEYFHWLEN-IQDWCISRQLWWGHRCP 537
                   555555554444444666666666666666666555555555566666779**99.*************9988 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00025
                   S-EEEE--EE.E--------------HHHHHHHH-HHHH CS
  tRNA-synt_1g 313 kkvvaheylt.vegkKlSkSrgvvvkakealerldadll 350
                   k+v+ h+ +   +g+K+SkS g+vv++ +++  ++ d l
    CCD22630.1 647 KEVFCHSLVRdAQGRKMSKSLGNVVDPLDVISGIKLDDL 685
                   6677777764379*****************999998876 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   3.3       1.4   3.7e+03      48      82 ..      34      68 ..      27      85 .. 0.61
   2 !    8.1   0.0   0.00066       1.7      14      45 ..     323     356 ..     316     363 .. 0.81
   3 !   29.8   0.0   1.4e-10   3.7e-07      85     142 ..     363     421 ..     357     437 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
  tRNA-synt_1_2 48 veklaekkkelaafieevkkksesereletkekeG 82
                   +ek ++k ++l +f ++ +kk+e+ ++ +++  + 
     CCD22630.1 34 IEKEKKKAEKLLKFAAKQAKKKEAAANNANNASKK 68
                   34446677777788777777766666555544443 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00066
  tRNA-synt_1_2  14 fkvees..eeklevfttrpdtlfGvtfvalapeh 45 
                    ++v++s  +ekl + ttrp+tlfG t +a+ p+ 
     CCD22630.1 323 YPVADSetDEKLIIATTRPETLFGDTAIAVHPDD 356
                    5565553368*****************9998875 PP

  == domain 3  score: 29.8 bits;  conditional E-value: 1.4e-10
  tRNA-synt_1_2  85 tglkaihPitgekipiwv.anyvlmeygtgavmavPahdqrDfeFakkynlpikqvikp 142
                    +g ++ hP+  +kipi +  + v me+gtgav   Pahdq+D++  k++nl+++++++ 
     CCD22630.1 363 HGKFVQHPFLPRKIPIILdKEAVDMEFGTGAVKITPAHDQNDYNTGKRHNLEFINILTD 421
                    57899**********988357999*****************************999875 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   9.0         7   1.8e+04       2      32 ..      34      64 ..      33      76 .. 0.83
   2 ?   -3.0   0.0       3.8   9.6e+03       6      35 ..     281     312 ..     279     313 .. 0.79
   3 ?   15.5   7.2     6e-06     0.015       1      66 []     994    1059 ..     994    1059 .. 0.98

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 7
  Val_tRNA-synt_C  2 vekeraRLeKeLaklekeiervqkKLanpgF 32
                     +eke+++ eK L+ ++k++++ +   +n + 
       CCD22630.1 34 IEKEKKKAEKLLKFAAKQAKKKEAAANNANN 64
                     89***************99998877777665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.8
  Val_tRNA-synt_C   6 raRLeKeLaklekeiervqkK..LanpgFveK 35 
                        +L+  +++le e + v+++  L+ pg+ eK
       CCD22630.1 281 SVKLNTAISNLEVENKDVKGRtlLSVPGYDEK 312
                      56788888899999999998877899998877 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 6e-06
  Val_tRNA-synt_C    1 DvekeraRLeKeLaklekeiervqkKLanpgFveKAPaeVVeeekaklaeleeqaeklkerLskLk 66  
                       D+++e+++  K+L+k+ k  + +++ ++++++ +KA  +  e++k kl +  ++ e l++ +++Lk
       CCD22630.1  994 DIDAEITKAGKKLEKAIKSKQNLEQTMNRKDYESKANVQAKEANKVKLDNSVAEIEGLEATIENLK 1059
                       9***********************************************************999986 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.8       1.1   2.7e+03      61     115 ..      30      86 ..      23      96 .. 0.57
   2 ?    6.0   0.0    0.0026       6.6      18     126 ..     148     327 ..     141     340 .. 0.72
   3 ?    8.7   0.0   0.00038      0.97     237     281 ..     646     690 ..     622     696 .. 0.84
   4 ?   -2.2   0.5      0.82   2.1e+03      51     108 ..     989    1048 ..     976    1057 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
                   HHHHHHHTTS-HHHHHHHHHHHH.HHHHHHTT----SB-.-BGGGGHHHHHHHHHHH CS
  tRNA-synt_1e  61 iikrareeeksvkelaekfieef.kkdleaLnvlkptle.prvsekvdeiielvekl 115
                    +k+ ++e+k+ ++l +   ++  kk+ +a n  +++++  +  ++v+ i e+v+k 
    CCD22630.1  30 TVKEIEKEKKKAEKLLKFAAKQAkKKEAAANNANNASKKaKKPKKEVEPIPEFVDKT 86 
                   555555555555555554443330334444445444443144567788888888775 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0026
                   BTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-........................................... CS
  tRNA-synt_1e  18 tvydashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeks........................................... 71 
                    v  a h+Gha ++ + D l r+ +++g  v f+  +      i ++++ e+++                                           
    CCD22630.1 148 NVTGALHIGHALTISIQDTLIRYNRMKGKTVLFLPGFDHAG--IATQSVVEKQMwakekktrhdygrtdfvnkvwewkeeyhnriknqiqnlgasyd 242
                   688899***************************98875422..222222222223334466788888888888888777777777777777777777 PP

                   ...............................HHHHHHHHHHHHHHHHHHTT----SB--BGGGGHHHHHHHHHHHHHTTSEEE-TT CS
  tRNA-synt_1e  72 ...............................vkelaekfieefkkdleaLnvlkptleprvsekvdeiielvekliekgyaYavsd 126
                                                   ++l  ++  ++++++++L+v + +++ r    v+   e ve  +  ++aY+v d
    CCD22630.1 243 wtreaftldpkltnsvveafvrlhddgtiyrAARL-VNWSVKLNTAISNLEVENKDVKGRTLLSVPGYDEKVEFGVLTSFAYPVAD 327
                   77777777777777777777777777777633333.35667777778888888888888887778777777777777777777765 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00038
                   -EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHH CS
  tRNA-synt_1e 237 lvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRllll 281
                   + + f h+ +   +g+kmsksL+n++   dv+   +   l   ll
    CCD22630.1 646 FKEVFCHSLVRDAQGRKMSKSLGNVVDPLDVISGIKLDDLHAKLL 690
                   56778899999999************9999988777776666655 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.82
                    EEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH.TT----S.B--BGGGGHHHH CS
  tRNA-synt_1e   51 vqnvtDidDkiikrareeeksvkelaekfieefkkdlea.Lnvlkpt.leprvsekvdei 108 
                    v+   Did  i k  ++ ek +k+  +   +   kd+e+  nv+  +  + +  + v+ei
    CCD22630.1  989 VKGHVDIDAEITKAGKKLEKAIKSKQNLEQTMNRKDYESkANVQAKEaNKVKLDNSVAEI 1048
                    566677877777666665555544433333333345543134443320234445555555 PP

>> Lge1  Transcriptional regulatory protein LGE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.6       3.1   7.9e+03       6      30 ..      19      43 ..      17      64 .. 0.68
   2 ?   10.6   1.5    0.0002      0.51      12      52 ..    1004    1044 ..     991    1047 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.1
        Lge1  6 ltdlndestlkkiesklkeiesldk 30
                + +l+++ t+k  +++ ke +++ k
  CCD22630.1 19 INPLKEDGTAKTVKEIEKEKKKAEK 43
                5566676666666666666666554 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0002
        Lge1   12 estlkkiesklkeiesldkqleelklkvlkleleldlleeq 52  
                  ++  k+i+sk +   ++++++ e+k++v   e++++ l + 
  CCD22630.1 1004 KKLEKAIKSKQNLEQTMNRKDYESKANVQAKEANKVKLDNS 1044
                  34449******************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1063 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2079  (0.115957); expected 358.6 (0.02)
Passed bias filter:                      853  (0.0475766); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.50
# Mc/sec: 6373.68
//
Query:       CCD22631.1  [L=843]
Description: hypothetical protein NDAI_0A04750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-66  220.4  13.6    8.3e-17   60.8   0.1    6.4  5  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    5.5e-06   26.1   0.0       0.32   10.9   0.0    4.4  4  RRM_occluded  Occluded RNA-recognition motif
    1.1e-05   25.4   0.1        1.7    8.7   0.0    4.7  5  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
      4e-05   23.2   0.0     0.0053   16.3   0.0    3.5  4  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
     0.0027   17.8   0.4        5.1    7.3   0.0    4.6  5  RRM_7         RNA recognition motif
  ------ inclusion threshold ------
      0.043   13.5   2.3        3.8    7.2   0.0    2.8  2  DUF1699       Protein of unknown function (DUF1699)
      0.096   12.8   1.8         55    3.9   0.0    4.3  4  Limkain-b1    Limkain b1


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.9   6.4e-11   1.6e-07       1      69 [.       4      82 ..       4      83 .. 0.87
   2 !   55.7   0.0   1.2e-18   3.1e-15       1      70 []     331     401 ..     331     401 .. 0.98
   3 !   30.4   0.0   9.7e-11   2.5e-07       1      66 [.     518     578 ..     518     582 .. 0.93
   4 !   44.7   0.1   3.4e-15   8.6e-12       1      69 [.     645     719 ..     645     720 .. 0.95
   5 !   60.8   0.1   3.2e-20   8.3e-17       1      69 [.     745     813 ..     745     814 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 6.4e-11
                EEEESETTTSSHHHHHHHHHT.T.........SCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFsk.f.........GpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69
                ++V++Lp+ +t+++Lk++F+k           + i+++k+ rd++g s++faf+ + ++edA +A++ +ng  ++  ++
  CCD22631.1  4 IIVKGLPTFLTDDNLKTHFNKrLstthkgksdNLITDVKVLRDRNGESRRFAFIGYRNEEDAFDAVNYFNGSYINTAKI 82
                78*****************98554555544445699************************************9998776 PP

  == domain 2  score: 55.7 bits;  conditional E-value: 1.2e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 lf++n+ ++ tee+ ++lFs+fG+ +++ +  d +tg+skgfa++ F+++ dA +A  +l+++ ++gr l+
  CCD22631.1 331 LFLRNILYSSTEEDFRKLFSPFGELEEVHIALDtRTGQSKGFAYILFKDPKDALQAYIELDKQIFQGRLLH 401
                 799****************************************************************9875 PP

  == domain 3  score: 30.4 bits;  conditional E-value: 9.7e-11
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklgg 66 
                 + V+n+p+ +t+ee+ elFs+fG+i+++ ++      +  +a+V+F +  + ++A ++l  k +++
  CCD22631.1 518 ILVKNFPFGTTREEIGELFSPFGEIERLLMPA-----AGTIAIVQFRDVTSGRAAFSKLAFKRFKD 578
                 68******************************.....59******************999888875 PP

  == domain 4  score: 44.7 bits;  conditional E-value: 3.4e-15
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE......TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd......etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +f++nL+++++ ++L   F+ f++++ +++ ++      ++  s+gf+f eF +ke+A++ ++a++g+ ++g+++
  CCD22631.1 645 IFIKNLNFSTSSSDLTSRFKVFNGFVVAQVKTKpdpkhpNKTLSMGFGFAEFRTKEQANAVIAAMDGTVIDGHKI 719
                 8************************9999988888999999999*****************************98 PP

  == domain 5  score: 60.8 bits;  conditional E-value: 3.2e-20
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++V+nLp+++t++++ elF+ fG+ ks++++++ +++++gfaf+eF  + +Ae+A+++l+g  l gr+l
  CCD22631.1 745 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFIEFLLPKEAENAMDQLQGVHLLGRRL 813
                 78***********************************************************99999886 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.46   1.2e+03      24      74 ..      24      88 ..       4      92 .. 0.73
   2 !   10.9   0.0   0.00012      0.32      20      70 ..     347     402 ..     340     410 .. 0.73
   3 !    7.3   0.0    0.0016       4.1       2      52 ..     516     564 ..     515     581 .. 0.85
   4 ?    1.1   0.0      0.14   3.6e+02      44      69 ..     695     720 ..     692     722 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.46
  RRM_occluded 24 ek.........egeikkivLvpdheG.....AivefkdekiagkasLaLdgsefegkklrcGtvk 74
                  ++         ++ i+++ +  d +G     A++ +++e++a  a+   +gs ++  k++++  k
    CCD22631.1 24 KRlstthkgksDNLITDVKVLRDRNGesrrfAFIGYRNEEDAFDAVNYFNGSYINTAKIEVSMAK 88
                  44455555555577888888888887777779999999999999999999999999999988766 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00012
  RRM_occluded  20 alveekegeikkivLvpdheG......AivefkdekiagkasLaLdgsefegkklrc 70 
                   +l+++  ge++++++  d +       A + fkd k+a +a ++Ld + f+g+ l++
    CCD22631.1 347 KLFSPF-GELEEVHIALDTRTgqskgfAYILFKDPKDALQAYIELDKQIFQGRLLHI 402
                   555666.6666555555432222222499**************************97 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0016
  RRM_occluded   2 rtisllplsDtvnkariralveekegeikkivLvpdheGAivefkdekiag 52 
                   rti + +++   ++++i +l+++  gei+++++ +    Aiv+f+d+++ g
    CCD22631.1 516 RTILVKNFPFGTTREEIGELFSPF-GEIERLLMPAAGTIAIVQFRDVTS-G 564
                   67888888888999**********.*********************975.4 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.14
  RRM_occluded  44 efkdekiagkasLaLdgsefegkklr 69 
                   ef+ +++a  ++ a+dg+ ++g+k++
    CCD22631.1 695 EFRTKEQANAVIAAMDGTVIDGHKIQ 720
                   8999999999999***********97 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.61   1.6e+03      34      53 .]      50      69 ..       4      69 .. 0.71
   2 !    8.2   0.0   0.00094       2.4      20      53 .]     348     387 ..     339     387 .. 0.80
   3 ?   -1.5   0.0         1   2.6e+03      11      24 ..     484     497 ..     483     498 .. 0.79
   4 ?    1.5   0.0      0.12   3.1e+02       9      46 ..     523     561 ..     515     567 .. 0.77
   5 !    8.7   0.0   0.00066       1.7      13      52 ..     755     799 ..     752     800 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.61
  Nup35_RRM_2 34 kevsvmyvkfesekdaekAL 53
                  ++ ++++ +++e da  A+
   CCD22631.1 50 ESRRFAFIGYRNEEDAFDAV 69
                 56789999999999997775 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00094
  Nup35_RRM_2  20 hFasfGeIvkhyvp......kevsvmyvkfesekdaekAL 53 
                   F  fGe  +  +       +++ ++y+ f+++kda +A+
   CCD22631.1 348 LFSPFGELEEVHIAldtrtgQSKGFAYILFKDPKDALQAY 387
                  567788888855556688889999**************97 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1
  Nup35_RRM_2  11 telielVlehFasf 24 
                  ++ i +V+ +F+s 
   CCD22631.1 484 AHVIGDVRKYFESK 497
                  567889*****985 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.12
  Nup35_RRM_2   9 ydteli.elVlehFasfGeIvkhyvpkevsvmyvkfese 46 
                  ++ ++  e++ e F  fGeI +  +p +  +++v+f++ 
   CCD22631.1 523 FPFGTTrEEIGELFSPFGEIERLLMPAAGTIAIVQFRDV 561
                  5555443677778999**********999******9985 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.00066
  Nup35_RRM_2  13 lielVlehFasfGeIvkhyvp.....kevsvmyvkfesekdaekA 52 
                  ++++V e F+sfG+     vp     +++ +++++f  +k+ae A
   CCD22631.1 755 TRKDVFELFNSFGQLKSVRVPkkfdkSARGFAFIEFLLPKEAENA 799
                  5799********************9*99***************99 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.49   1.3e+03      57     102 ..      41      90 ..      36     111 .. 0.72
   2 ?    0.9   0.0      0.13   3.3e+02      29      82 ..     518     569 ..     502     579 .. 0.76
   3 ?    0.7   0.0      0.14   3.6e+02      75     104 ..     700     729 ..     693     744 .. 0.77
   4 !   16.3   0.0   2.1e-06    0.0053      20     102 ..     736     821 ..     721     834 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.49
       RRM_5  57 vkflktkket....alvqmgdasaveravqHLnnaklfgkrlevalSKqq 102
                 vk+l+ +++     a++   ++ ++  av+ +n+  +   ++ev + K  
  CCD22631.1  41 VKVLRDRNGEsrrfAFIGYRNEEDAFDAVNYFNGSYINTAKIEVSMAKSF 90 
                 56666555432233777778888889999********9999999999864 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.13
       RRM_5  29 llVyglepdkvnldklFnlfclYgnvervkflktkketalvqmgdasaveravq 82 
                 +lV ++     + +++  lf+ +g++er+ ++      a+vq  d ++   a +
  CCD22631.1 518 ILVKNFPFG-TTREEIGELFSPFGEIERL-LMPAAGTIAIVQFRDVTSGRAAFS 569
                 566666544.46678889**********7.688888899999988877666655 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.14
       RRM_5  75 saveravqHLnnaklfgkrlevalSKqqav 104
                  +++  +  + ++ + g++++++lS +q  
  CCD22631.1 700 EQANAVIAAMDGTVIDGHKIQLKLSHRQGT 729
                 6788889999***************99874 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 2.1e-06
       RRM_5  20 aagvaegsVllVyglepdkvnldklFnlfclYgnverv....kflktkketalvqmgdasaveravqHLnnaklfgkrlevalSKqq 102
                  + +++++ ++V +l  +  + + +F lf  +g+++ v    kf k+ ++ a+++    +++e a++ L++++l g+rl ++   ++
  CCD22631.1 736 SKNKTKSAKIIVKNLPFE-ATRKDVFELFNSFGQLKSVrvpkKFDKSARGFAFIEFLLPKEAENAMDQLQGVHLLGRRLVMQYAQED 821
                 456678889999999655.67788999999999999875566788999******************************988776655 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.58   1.5e+03       3      24 ..       3      24 ..       2      33 .. 0.89
   2 ?    1.6   0.0      0.12     3e+02      45      61 ..     365     381 ..     332     396 .. 0.71
   3 ?   -2.8   0.0       2.8   7.1e+03       4      28 ..     518     542 ..     516     544 .. 0.84
   4 ?    2.0   0.0     0.088   2.2e+02       4      84 ..     645     726 ..     642     732 .. 0.67
   5 !    7.3   0.0     0.002       5.1       1      38 [.     742     780 ..     742     801 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.58
       RRM_7  3 kvFvGGlPiDiteeelkatfke 24
                ++ v GlP+ +t+++lk+ f++
  CCD22631.1  3 RIIVKGLPTFLTDDNLKTHFNK 24
                58899************99975 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
       RRM_7  45 nskaakgyvflvfedek 61 
                  + + kg+++++f+d k
  CCD22631.1 365 RTGQSKGFAYILFKDPK 381
                 344568*******9854 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.8
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkv 28 
                 + v   P   t ee+ + f+ fg++
  CCD22631.1 518 ILVKNFPFGTTREEIGELFSPFGEI 542
                 667778999999**********986 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.088
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaL...leacteeeeelylklssr 84 
                 +F+  l    + ++l++ fk f   +v   k +  +k+ +  ++   g+ f  f +++  +a+   ++ +  + +++ lkls r
  CCD22631.1 645 IFIKNLNFSTSSSDLTSRFKVFNGFVVAQVKTKPDPKHPN--KTLSMGFGFAEFRTKEQANAViaaMDGTVIDGHKIQLKLSHR 726
                 67777778888899999*****999998776655544444..344569999888766555544000555555668888888765 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.002
       RRM_7   1 srkvFvGGlPiDiteeelkatfkefgkvl.vdwPkkaes 38 
                 s k+ v  lP + t +++ + f++fg+++ v  Pkk  +
  CCD22631.1 742 SAKIIVKNLPFEATRKDVFELFNSFGQLKsVRVPKKFDK 780
                 78************************9854888887433 PP

>> DUF1699  Protein of unknown function (DUF1699)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.1     0.014        35      80     120 ..     291     331 ..     282     339 .. 0.84
   2 ?    7.2   0.0    0.0015       3.8      23      55 ..     749     781 ..     735     791 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.014
     DUF1699  80 rkdineyyevseevierikelkseglseeeiaeklsketkl 120
                 +k i+++ + +++v+e+i+e ++e  +ee+i+ek++++ +l
  CCD22631.1 291 QKPIEQEEKEKDAVTEEITEQEHEINEEEKIIEKINNTGRL 331
                 6667777777899**********************998876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0015
     DUF1699  23 HlafrpsntdilslvkkcpklkaiqvpeSykkt 55 
                  l f + ++d+++l+++  +lk ++vp+ + k+
  CCD22631.1 749 NLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS 781
                 589************************988775 PP

>> Limkain-b1  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.2   5.2e+02       5      62 ..       4      60 ..       1      94 [. 0.54
   2 ?   -3.0   0.0       3.1   7.9e+03      40      60 ..     550     570 ..     546     577 .. 0.78
   3 ?    3.9   0.0     0.022        55      46      79 ..     694     727 ..     685     738 .. 0.82
   4 ?    3.8   0.0     0.023        59      41      86 ..     783     828 ..     742     830 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.2
  Limkain-b1  5 lvvsnLPtnr..dklkkaiknrLrrLsdncGGkvlsisgksavlrfanqeaaeralkrle 62
                ++v+ LPt    d lk   +   +rLs    Gk  ++     vlr +n e+ + a     
  CCD22631.1  4 IIVKGLPTFLtdDNLKTHFN---KRLSTTHKGKSDNLITDVKVLRDRNGESRRFAFIGYR 60
                56677776541022333333...4455555566666666666666666665555543332 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.1
  Limkain-b1  40 sgksavlrfanqeaaeralkr 60 
                  g+ a+++f++  + + a  +
  CCD22631.1 550 AGTIAIVQFRDVTSGRAAFSK 570
                 688999***998888777655 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.022
  Limkain-b1  46 lrfanqeaaeralkrleneDvfGnritvsekprn 79 
                   f+ +e a+  +  +++  + G++i ++ + r+
  CCD22631.1 694 AEFRTKEQANAVIAAMDGTVIDGHKIQLKLSHRQ 727
                 579***********************99887654 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.023
  Limkain-b1  41 gksavlrfanqeaaeralkrleneDvfGnritvsekprnkevneee 86 
                  + a + f  +  ae a+ +l++    G r+ ++   +++ ++eee
  CCD22631.1 783 RGFAFIEFLLPKEAENAMDQLQGVHLLGRRLVMQYAQEDAADAEEE 828
                 3447899**************************9998887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1889  (0.10536); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 5574.43
//
Query:       CCD22632.1  [L=488]
Description: hypothetical protein NDAI_0A04760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-53  180.7   0.1    7.4e-52  176.3   0.1    2.1  1  Pkinase        Protein kinase domain
    5.7e-26   91.3   0.2    1.2e-19   70.6   0.0    2.3  2  Pkinase_Tyr    Protein tyrosine kinase
    0.00031   19.8   0.3    0.00045   19.3   0.3    1.2  1  Haspin_kinase  Haspin like kinase domain
     0.0027   17.7   0.0      0.056   13.4   0.0    2.2  2  APH            Phosphotransferase enzyme family
     0.0065   15.8   0.1      0.022   14.1   0.0    1.8  1  Kinase-like    Kinase-like
     0.0085   15.5   0.0      0.017   14.5   0.0    1.5  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   0.1   2.5e-55   7.4e-52       1     264 []      98     393 ..      98     393 .. 0.89

  Alignments for each domain:
  == domain 1  score: 176.3 bits;  conditional E-value: 2.5e-55
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 +e ++++G+G++GkV+  ++k+t++  A+K++ k+   k ++ ++vl+E  il  +k+  +v+l+++f+++++lyl +e+v+gg++ +ll++ + l+++
  CCD22632.1  98 FEIISQIGQGGYGKVFLSRKKDTSELCALKILHKKPSLKLQQiNQVLMERDILSITKSVWLVKLLYAFQDQEQLYLAMEFVPGGDFRTLLSNVKYLKHN 196
                 57889********************************999999************************************************9999**** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS....................................BCTTTSCG CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk....................................ltsfvgts 161
                 +a++++++++ +++ lH+ g iHrDlKpeN+Lid++g++K+tDFGla+     s+                                    ++s+vg+ 
  CCD22632.1 197 HAEFYISEMFLAINSLHQLGYIHRDLKPENFLIDSSGHVKLTDFGLASGKFPYSEvlrmeerlnrveslrhfkyydfngisedfkciqsnyANSVVGSV 295
                 ***********************************************97777666799999************************************** PP

                 GGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.HHHHH CS
     Pkinase 162 eYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.aeell 259
                 +Y+A  vl+ ++y+ +vD+WslG+il+e l g +pfsg + ke++e+  +     +  l+      + +  +++e  dl+k ll  dp  Rl  +eel+
  CCD22632.1 296 DYMAIDVLECQDYDYTVDYWSLGCILFESLVGFTPFSGASCKETTENLRHW----RTKLKR-PILKDGRPAFPNETWDLIK-LLIADPAIRLRsIEELK 388
                 *************************************77766643333333....222221.2233344556888889886.56677888874377777 PP

                 TSGGG CS
     Pkinase 260 qhpyl 264
                 + +y+
  CCD22632.1 389 NIEYF 393
                 77766 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   4.1e-23   1.2e-19       2     153 ..      99     246 ..      98     263 .. 0.91
   2 !   18.6   0.0   3.1e-07   0.00092     148     226 ..     275     352 ..     261     357 .. 0.78

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 4.1e-23
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  e+ +++G+G +GkV+  + k    ++++ +a+K+l  k + + ++ +++l e +i++ +k   +vkll +  ++e+l++ +e+v+gGd+++ L +   
   CCD22632.1  99 EIISQIGQGGYGKVFLSRKK----DTSELCALKILhkKPSLKLQQINQVLMERDILSITKSVWLVKLLYAFQDQEQLYLAMEFVPGGDFRTLLSNV-- 190
                  57789**********99988....889999****9544567778899**********************************************997.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi 153
                  + l+ ++   ++ ++  +++ L++  ++Hrdl   N L++++ +vk++DfGLa+  
   CCD22632.1 191 KYLKHNHAEFYISEMFLAINSLHQLGYIHRDLKPENFLIDSSGHVKLTDFGLASGK 246
                  99999999999*****************************************9866 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.1e-07
                  TTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-B CS
  Pkinase_Tyr 148 GLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevlekl.kegkrlek 226
                  G+++d  k  + + +++   +v +ma+ +l+ + +    D Ws G +l+E +  g +p++g + +e++e+l + +++l++
   CCD22632.1 275 GISEDF-KCIQSNYANSVVGSVDYMAIDVLECQDYDYTVDYWSLGCILFESLV-GFTPFSGASCKETTENLrHWRTKLKR 352
                  566665.223333455667899****************************999.********999999999444555555 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3   1.5e-07   0.00045     148     254 ..     121     243 ..      47     259 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.5e-07
  Haspin_kinase 148 kelkslklvkgtypglllllqdkvlkek...............pdfyseqqlflvlllkdkGtdLeev.klkswkqalsifwqivkiLyvaE.tkf 226
                     el  lk+++ + p+l l   ++vl+e+                 f++++ql+l +++  +G+  + + ++k  k+    f+     L++    ++
     CCD22632.1 121 SELCALKILHKK-PSLKLQQINQVLMERdilsitksvwlvkllYAFQDQEQLYLAMEFVPGGDFRTLLsNVKYLKHNHAEFYISEMFLAINSlHQL 215
                    677788888888.88888888888888888888888888888888999999999999999886555553444444444456655555554332689 PP

  Haspin_kinase 227 eFEHRdLhldniLvdknlnvtlidlkls 254
                     + HRdL+ +n L+d++++v l d+ l+
     CCD22632.1 216 GYIHRDLKPENFLIDSSGHVKLTDFGLA 243
                    99***********************987 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.021        64      54     108 ..     159     215 ..     101     217 .. 0.67
   2 !   13.4   0.0   1.9e-05     0.056     165     204 ..     214     251 ..     192     258 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.021
                 --B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  54 vPevlagdtddeeigllfalieyvpgrsllr......klsaaqlpellealgeflaalhqv 108
                 v ++l+     ++++ l++++e+vpg ++++      +l +++++ ++ ++  ++  lhq+
  CCD22632.1 159 V-KLLY---AFQDQEQLYLAMEFVPGGDFRTllsnvkYLKHNHAEFYISEMFLAINSLHQL 215
                 3.3333...3466777888999999998888777888788888888888888888888886 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.9e-05
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHH CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyD 204
                 + + +H+Dl+p N+l+d+ ++    + Df++a+   p  +
  CCD22632.1 214 QLGYIHRDLKPENFLIDSSGHVK--LTDFGLASGKFPYSE 251
                 6789*************554544..999999986666655 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.3e-06     0.022     144     189 ..     197     241 ..     181     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.3e-06
  Kinase-like 144 iarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft 189
                  +a+ ++  ++   + +L+++g +h +++++n+l d  g ++l++f+
   CCD22632.1 197 HAEFYI-SEMFLAINSLHQLGYIHRDLKPENFLIDSSGHVKLTDFG 241
                  444444.333334589****************************96 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.7e-06     0.017     115     169 ..     193     243 ..     174     274 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.7e-06
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldka 169
                 l+++  +  + +   +i+ lh++g  H+dl + n+l++  +    ++ l D+  a
  CCD22632.1 193 LKHNHAEFYISEMFLAINSLHQLGYIHRDLKPENFLIDSSG----HVKLTDFGLA 243
                 55566666666777899**********************99....8888888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3402.74
//
Query:       CCD22633.1  [L=335]
Description: hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-28   98.9   0.0    3.8e-28   98.1   0.0    1.4  1  RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
      2e-21   75.2   0.0    2.7e-21   74.8   0.0    1.2  1  RNA_pol_L      RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   4.3e-32   3.8e-28       1     112 []      83     220 ..      83     220 .. 0.91

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 4.3e-32
                    EEEEECTSSS.HHHHHCHHHCSTCBSSCHHHHHHHHCTT-ETSSSSTTCSEEEEEEEEESSEC..................EEGGGCBES...... CS
  RNA_pol_A_bac   1 VeieentsvlqDEvvaHrlgliplvsedvleillnlkelveeeeegeeeksvelkLnvkgpge..................vtagdlkle...... 72 
                    V++ +ntsv+qDEv+aHr+g+ipl+ ++++     +    +eee+++++++v+++Ln+k++++                  v+a+dlk+e      
     CCD22633.1  83 VYFLTNTSVIQDEVLAHRIGMIPLKVDPDML--SWIDTSLSEEEKFTDDNTVVMSLNIKCTRNlnapkdctdpkilyhnssVYAKDLKFEpqgkqv 176
                    8999************************999..5555544479**********************************************8887777 PP

                    ....SSSCEESSTTSEEEEEETT-EEEEEEEEEEESSEECTTT- CS
  RNA_pol_A_bac  73 ....dadveivnpdilIakLrkgqeleleakvkkGiGkehakfs 112
                        +  v + +pdil+akLr++qe++l++++  G+G +hakfs
     CCD22633.1 177 etfaKCPVVPSDPDILLAKLRPDQEISLRVHCILGVGGDHAKFS 220
                    77777777777********************************8 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0     3e-25   2.7e-21       2      68 ..      54     324 ..      53     325 .. 0.83

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 3e-25
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................... RF
   RNA_pol_L   2 fllrgvdhtlgNaLRrillsevpgvaiea...................................................................... 30 
                 f+l+++d++++Na+Rri++sevp+va e                                                                       
  CCD22633.1  54 FDLINIDTSMANAFRRIMISEVPSVAAEYvyfltntsviqdevlahrigmiplkvdpdmlswidtslseeekftddntvvmslnikctrnlnapkdctd 152
                 99**************************************************************************99999999999999999999999 PP

                 ....................................................................xx............................. RF
   RNA_pol_L  31 ....................................................................pv............................. 32 
                                                                                     pv                             
  CCD22633.1 153 pkilyhnssvyakdlkfepqgkqvetfakcpvvpsdpdillaklrpdqeislrvhcilgvggdhakfsPVstasyrllphinilkpitgeqaikfqkcf 251
                 999999999999999999998888888888777777777777777777777777777777777777771155555555555555555666666666666 PP

                 .....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  33 .....................................vkvntdkdklilevetdgslkPeealkeAlkiLkek 68 
                                                      vk+ + +d++i++ve++g+++Pee++ ++++iLk+k
  CCD22633.1 252 lpgvigineetgeayvkdarkdtvsrevlrheefndkVKLGRIRDHFIFNVESTGAMTPEEIFFKSVRILKNK 324
                 66677777777777777777777777777777777768999******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2576.61
//
Query:       CCD22634.1  [L=328]
Description: hypothetical protein NDAI_0A04780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-06   28.4   3.1     0.0091   16.3   0.1    3.0  2  DUF1746   Fungal domain of unknown function (DUF1746)


Domain annotation for each model (and alignments):
>> DUF1746  Fungal domain of unknown function (DUF1746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   5.1e-07    0.0091       2      44 ..      41      84 ..      40     101 .. 0.83
   2 !   10.4   0.3   3.6e-05      0.64      80     114 ..     236     274 ..     158     275 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.1e-07
     DUF1746  2 ldllvyvllvilYlrDls.flrlllRafvqlllltpkpsaiael 44
                l +l y+l++++Y +  + + +l+lR++vq +l++p p+ i+++
  CCD22634.1 41 LTFLGYFLIILQYIKYGTtVWSLILRCMVQSFLSNPFPNRIQMQ 84
                7899**********97653789****************987654 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 3.6e-05
     DUF1746  80 ylhgGliidFiGekapssrle....llllDvlilllQlv 114
                     +++++ iGe +p + +     ++ +D++il+ Q++
  CCD22634.1 236 LRATSIFLQLIGEPLPRNNFAgnfgMISFDFFILISQFL 274
                 667899********99998877888************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2452.80
//
Query:       CCD22635.1  [L=420]
Description: hypothetical protein NDAI_0A04790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-51  174.7   3.2    1.3e-51  174.7   3.2    1.6  2  RPN7      26S proteasome subunit RPN7
      4e-15   56.2   0.1    1.2e-14   54.7   0.1    1.9  1  PCI       PCI domain
  ------ inclusion threshold ------
      0.034   14.2   0.5       0.14   12.3   0.5    2.0  1  DUF357    Protein of unknown function (DUF357)
      0.037   14.2   0.4      0.037   14.2   0.4    3.1  4  TPR_8     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.7   3.2     3e-55   1.3e-51       1     174 []      85     259 ..      85     259 .. 0.99
   2 ?   -3.0   0.0       1.2   5.2e+03      57      87 ..     300     330 ..     299     338 .. 0.70

  Alignments for each domain:
  == domain 1  score: 174.7 bits;  conditional E-value: 3e-55
                 -HHHHHHHHHHHHHHHHHHHHHHHHHH.HTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH CS
        RPN7   1 DekwveelrkknekeleeLdaelkdak.enlgkeeirrakldlaehYlkigdleeAlkaysrireyctslkhkidmllnlirvaiffndwdlvskylek 98 
                 +++++++l++ ne++++eL+ ++k+ + e++g+ e++  + +l+e+Y++igd+e+   +++++++  +s+++kid++l++ r+++f+nd   v++ le+
  CCD22635.1  85 NPSFYSKLNALNEAKINELKDNIKKVEnEDEGDLEMAHRYIALGEYYAQIGDKENMEITLKQVLKMAISTGAKIDVMLTIARMGFFYNDQVYVKEKLEQ 183
                 57899**********************999********************************************************************* PP

                 HHCSSS---.HHHHHHHHHHHHHHHHHTT-HHHHHHHHCTS-GGGT.TTT--HHHHHHHHHHHHHHH--HHHHHHH CS
        RPN7  99 akellekggdwerknrlkvyeGlallairkfkeAaellldilstftskellsyedlavyavlcalatldRkdLkak 174
                 +++l+ekggdwer+nr+k+y+G+++la+r+fkeAa+ll+d+l+tfts el sy+++a+ya +++l+tl+R+dLk+k
  CCD22635.1 184 VNSLIEKGGDWERRNRYKTYKGIHCLAVRDFKEAANLLVDSLATFTSVELTSYDKIATYASVAGLFTLERTDLKNK 259
                 **************************************************************************86 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.2
                 HHHHTCCCC--SHHHHHHHHHHHHHHHHHTT CS
        RPN7  57 kaysrireyctslkhkidmllnlirvaiffn 87 
                 ++y  ++++c  l+ ++d +++ +r +++++
  CCD22635.1 300 ETYDNVLIPCKYLNKHADFFVREMRRKVYAQ 330
                 6788888888888888888887777666655 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.1   2.6e-18   1.2e-14       2     104 ..     278     381 ..     277     382 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 2.6e-18
                 HHHHHHHHHHHTS.HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTT CS
         PCI   2 sysdllkalrsgn.lsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakidqesg 99 
                 s+s l+ +l++++  s+fs +l+ + + l++ ++l+++ + +++++r++++ q+  +y+++sl ++a+ +++sv+ +++ l k+I ++++++ id+++g
  CCD22635.1 278 SISSLTISLYTSDySSYFSYLLETYDNVLIPCKYLNKHADFFVREMRRKVYAQLLDSYKTLSLRSMASSFGVSVEFLDNDLGKFIPNKQLNCVIDRVNG 376
                 677888888888867888999999*************************************************************************** PP

                 EEEEC CS
         PCI 100 ivvfk 104
                 iv+ +
  CCD22635.1 377 IVETN 381
                 **876 PP

>> DUF357  Protein of unknown function (DUF357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5     3e-05      0.14      11      52 ..      96     139 ..      92     141 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3e-05
                 HHHH.......TS---HHHHHHHHHHHHHHHHHHHHHHTT-HHH CS
      DUF357  11 ekvkiap..deesplgeaaeevlemaesYleDakyflekgdlvn 52 
                 +++ki +  d+ ++++++ e  lema +Y++ ++y+ + gd +n
  CCD22635.1  96 NEAKINElkDNIKKVENEDEGDLEMAHRYIALGEYYAQIGDKEN 139
                 4444443327778888999999*******************997 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.3   5.7e+03      18      31 ..      53      66 ..      52      67 .. 0.82
   2 ?   -2.0   0.0       1.3   5.8e+03      10      21 ..      88      99 ..      87     100 .. 0.86
   3 ?   14.2   0.4   8.2e-06     0.037       2      30 ..     122     150 ..     121     151 .. 0.93
   4 ?   -2.4   0.1       1.7   7.8e+03       2      14 ..     326     338 ..     326     341 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.3
                HHHHHHHHHHHHHH CS
       TPR_8 18 eeAkeyyekaleld 31
                e A +++ +a+el+
  CCD22635.1 53 EDATKTILEAIELE 66
                77889999***997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.3
                HHHHTT-HHHHH CS
       TPR_8 10 iylklgdyeeAk 21
                 y+kl+ ++eAk
  CCD22635.1 88 FYSKLNALNEAK 99
                699999999998 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 8.2e-06
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekalel 30 
                 + y  lg  y + gd+e+++ +++++l++
  CCD22635.1 122 HRYIALGEYYAQIGDKENMEITLKQVLKM 150
                 6799***********************98 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.7
                 CHHHHHHHHHHHT CS
       TPR_8   2 eayynlgsiylkl 14 
                 ++y +l + y++l
  CCD22635.1 326 KVYAQLLDSYKTL 338
                 5899999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1233  (0.0687713); expected 358.6 (0.02)
Passed bias filter:                      719  (0.0401026); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 3254.31
//
Query:       CCD22636.1  [L=215]
Description: hypothetical protein NDAI_0A04800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-12   45.6  29.0    0.00072   19.4   0.5    5.6  5  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    1.4e-10   40.9  29.2    6.8e-06   26.0   2.5    5.3  5  zf_CCCH_4  Zinc finger domain
      1e-07   32.6  20.8     0.0027   18.4   0.5    4.5  6  Torus      Torus domain
    2.2e-07   31.0  12.4    6.5e-06   26.3   6.0    2.3  2  zf-CCCH_3  Zinc-finger containing family
  ------ inclusion threshold ------
      0.028   14.2   1.2      0.028   14.2   1.2    4.2  4  zf-CCCH_4  CCCH-type zinc finger
        5.7    7.6  31.0       0.63   10.6   1.1    5.6  5  zf-CCCH_2  RNA-binding, Nab2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   1.2    0.0032       9.5       5      25 ..      33      56 ..      29      58 .. 0.68
   2 !   19.4   0.5   2.4e-07   0.00072       5      25 ..      66      85 ..      62      87 .. 0.93
   3 !   15.5   0.5   3.9e-06     0.012       2      25 ..      91     114 ..      90     116 .. 0.94
   4 !    9.7   0.9   0.00026      0.78       2      25 ..     120     142 ..     119     144 .. 0.89
   5 !   13.3   0.7     2e-05     0.061       3      25 ..     145     166 ..     143     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0032
                CBCHHHHHS...--TTGGG-SSBS CS
     zf-CCCH  5 lCrffmrtG...yCkyGdrCkFaH 25
                +C +f  +    +C++G+ C+  H
  CCD22636.1 33 ICEDFDYHIgerSCPRGNLCPKKH 56
                5555554444669*******8666 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.4e-07
                CBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH  5 lCrffmrtGyCkyGdrCkFaH 25
                 C++++r G Ck  d+C + H
  CCD22636.1 66 VCKHWLR-GLCKKNDQCEYLH 85
                6******.************* PP

  == domain 3  score: 15.5 bits;  conditional E-value: 3.9e-06
                 HCHCBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH   2 ktelCrffmrtGyCkyGdrCkFaH 25 
                 k+++C f++++GyC   + C++ H
  CCD22636.1  91 KMPECVFYSKNGYCTQTPECQYLH 114
                 899********************* PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00026
                 HCHCBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH   2 ktelCrffmrtGyCkyGdrCkFaH 25 
                 k ++C ++   G+C+ Gd C++ H
  CCD22636.1 120 KIPRCEDYDV-GFCSLGDGCPRRH 142
                 6789******.*********9877 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 2e-05
                 CHCBCHHHHHS--TTGGG-SSBS CS
     zf-CCCH   3 telCrffmrtGyCkyGdrCkFaH 25 
                   +C++++  G+C+ G+ C  +H
  CCD22636.1 145 KIICQRYLN-GFCPLGPECDMSH 166
                 568******.*********6555 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.058   1.7e+02       8      16 ..      45      53 ..      43      53 .. 0.88
   2 !   26.0   2.5   2.3e-09   6.8e-06       1      19 []      67      85 ..      67      85 .. 0.99
   3 !   14.2   1.4   1.1e-05     0.034       1      19 []      95     114 ..      95     114 .. 0.99
   4 ?    2.0   0.8     0.076   2.3e+02       7      16 ..     130     139 ..     124     139 .. 0.87
   5 !   13.5   0.2     2e-05     0.058       1      19 []     148     166 ..     148     166 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.058
   zf_CCCH_4  8 tCkkGdkCr 16
                +C++G+ C+
  CCD22636.1 45 SCPRGNLCP 53
                7*****996 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 2.3e-09
   zf_CCCH_4  1 CkfflqGtCkkGdkCrFaH 19
                Ck++l+G Ckk+d+C ++H
  CCD22636.1 67 CKHWLRGLCKKNDQCEYLH 85
                ******************* PP

  == domain 3  score: 14.2 bits;  conditional E-value: 1.1e-05
   zf_CCCH_4   1 Ckfflq.GtCkkGdkCrFaH 19 
                 C f+ + G+C+    C+++H
  CCD22636.1  95 CVFYSKnGYCTQTPECQYLH 114
                 ******************** PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.076
   zf_CCCH_4   7 GtCkkGdkCr 16 
                 G C+ Gd C+
  CCD22636.1 130 GFCSLGDGCP 139
                 99*****996 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 2e-05
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 C+ +l+G C+ G  C  +H
  CCD22636.1 148 CQRYLNGFCPLGPECDMSH 166
                 999************9999 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.8   5.5e+03      80      93 ..      45      58 ..      35      62 .. 0.82
   2 !   18.4   0.5     9e-07    0.0027      68      92 ..      62      86 ..      59      91 .. 0.92
   3 !   14.6   0.6   1.3e-05     0.039      71      97 ..      93     120 ..      86     130 .. 0.80
   4 ?    1.1   0.3      0.22   6.5e+02      73      91 ..     124     142 ..     118     143 .. 0.84
   5 !   12.5   0.2   6.2e-05      0.19      68      91 ..     143     166 ..     139     181 .. 0.88
   6 ?   -1.9   0.0       1.8   5.5e+03      43      46 ..     187     190 ..     165     206 .. 0.40

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.8
                --SSGGG-SSB-S- CS
       Torus 80 lCakGkkCeylHrl 93
                 C++G+ C   H l
  CCD22636.1 45 SCPRGNLCPKKHVL 58
                699***99988865 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 9e-07
                TT--B-HHHHHT--SSGGG-SSB-S CS
       Torus 68 kesyfClfFarGlCakGkkCeylHr 92
                +++++C ++ rGlC+k  +CeylH+
  CCD22636.1 62 QNKIVCKHWLRGLCKKNDQCEYLHE 86
                5789********************7 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 1.3e-05
                 -B-HHHHH.T--SSGGG-SSB-S---SS CS
       Torus  71 yfClfFar.GlCakGkkCeylHrlPtee 97 
                   C+f+++ G+C++  +C+ylH  P ++
  CCD22636.1  93 PECVFYSKnGYCTQTPECQYLHIDPMSK 120
                 56****987*************777654 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.22
                 -HHHHHT--SSGGG-SSB- CS
       Torus  73 ClfFarGlCakGkkCeylH 91 
                 C  +  G+C+ G  C   H
  CCD22636.1 124 CEDYDVGFCSLGDGCPRRH 142
                 888889*********8777 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 6.2e-05
                 TT--B-HHHHHT--SSGGG-SSB- CS
       Torus  68 kesyfClfFarGlCakGkkCeylH 91 
                  ++++C  +  G+C+ G +C++ H
  CCD22636.1 143 IKKIICQRYLNGFCPLGPECDMSH 166
                 5789******************99 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 1.8
                 HS-- CS
       Torus  43 kksk 46 
                 kk++
  CCD22636.1 187 KKDE 190
                 1111 PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   6.0   2.2e-09   6.5e-06      15      88 ..      45     118 ..      35     126 .. 0.84
   2 !    8.7   0.6   0.00066         2      13      60 ..     129     172 ..     119     208 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.2e-09
   zf-CCCH_3  15 tctkGdscpfrheeaalGsetvctlWqegrclre.vckfrhmeidkkrkeipcywenqpaGcqklhcaflhekpr 88 
                  c +G+ cp +h    + + +vc+ W +g c ++ +c++ h   + ++    +++ ++   +q ++c +lh  p 
  CCD22636.1  45 SCPRGNLCPKKHVLGIFQNKIVCKHWLRGLCKKNdQCEYLHE-YNLRKMPECVFYSKNGYCTQTPECQYLHIDPM 118
                 7******************************87538*****5.555555666777788888999******98775 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00066
   zf-CCCH_3  13 ystctkGdscpfrheeaalGsetvctlWqegrc.lrevckfrhmeidkk 60 
                    c+ Gd cp rh +      ++c+ + +g c l   c + h + + +
  CCD22636.1 129 VGFCSLGDGCPRRHIKK-----IICQRYLNGFCpLGPECDMSHPKFNIN 172
                 567***********985.....679999999996678999998776655 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       0.5   1.5e+03      10      17 ..      45      52 ..      43      53 .. 0.80
   2 ?   14.2   1.2   9.3e-06     0.028       2      22 .]      66      86 ..      65      86 .. 0.94
   3 ?   -1.4   0.0      0.73   2.2e+03      17      21 ..     110     114 ..     108     114 .. 0.92
   4 ?    4.8   0.2    0.0083        25       2      22 .]     147     167 ..     146     167 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.5
   zf-CCCH_4 10 sCrfGdnC 17
                sC  G+ C
  CCD22636.1 45 SCPRGNLC 52
                79999866 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.3e-06
   zf-CCCH_4  2 lCpyfakGsCrfGdnCrFsHd 22
                +C+++++G C+  d C ++H+
  CCD22636.1 66 VCKHWLRGLCKKNDQCEYLHE 86
                8*******************6 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.73
   zf-CCCH_4  17 CrFsH 21 
                 C ++H
  CCD22636.1 110 CQYLH 114
                 99*99 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.0083
   zf-CCCH_4   2 lCpyfakGsCrfGdnCrFsHd 22 
                 +C  +++G C  G+ C  sH+
  CCD22636.1 147 ICQRYLNGFCPLGPECDMSHP 167
                 7999************99996 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.8      0.15   4.4e+02       1      17 [.      33      56 ..      33      56 .. 0.87
   2 ?   10.6   1.1   0.00021      0.63       2      17 ..      67      85 ..      67      85 .. 0.96
   3 ?    6.3   0.5    0.0047        14       2      17 ..      95     114 ..      94     114 .. 0.89
   4 ?    3.9   0.5     0.026        79       8      17 ..     132     142 ..     124     142 .. 0.89
   5 ?    4.2   1.1     0.022        67       1      13 [.     147     162 ..     147     167 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.15
   zf-CCCH_2  1 pCrffpn......C.tnpkCpFaH 17
                +C +f +      C ++  Cp +H
  CCD22636.1 33 ICEDFDYhigersCpRGNLCPKKH 56
                6888988888999*9999**9998 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00021
   zf-CCCH_2  2 Crffpn..C.tnpkCpFaH 17
                C+++    C +n++C + H
  CCD22636.1 67 CKHWLRglCkKNDQCEYLH 85
                ***************9888 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0047
   zf-CCCH_2   2 Crffpn...C.tnpkCpFaH 17 
                 C f+ +   C   p+C + H
  CCD22636.1  95 CVFYSKngyCtQTPECQYLH 114
                 889998999*8888****99 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.026
   zf-CCCH_2   8 C.tnpkCpFaH 17 
                 C  ++ Cp +H
  CCD22636.1 132 CsLGDGCPRRH 142
                 889*******9 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.022
   zf-CCCH_2   1 pCrffpn..C.tnpkC 13 
                 +C  + n  C  +p+C
  CCD22636.1 147 ICQRYLNgfCpLGPEC 162
                 7999************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1528.37
//
Query:       CCD22637.1  [L=475]
Description: hypothetical protein NDAI_0A04810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-13   50.1   4.1    2.3e-13   50.1   4.1    2.1  3  Pkinase      Protein kinase domain
    5.6e-08   32.4   0.6    2.9e-07   30.1   0.6    2.1  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.57   5.1e+03     158     176 ..       6      25 ..       3      28 .. 0.76
   2 ?   -3.6   0.0      0.63   5.6e+03     215     254 ..      57      99 ..      48     104 .. 0.62
   3 !   50.1   4.1   2.6e-17   2.3e-13       9     208 ..     152     407 ..     144     450 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.57
                 TSCGGGS-HHHHTTSCB.SH CS
     Pkinase 158 vgtseYlAPEvlkeney.sk 176
                 + t+   +PE+l++++y s+
  CCD22637.1   6 TTTPSLSPPELLSRQDYiSS 25 
                 56888899****99998444 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.63
                 HHHHHCT...SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT CS
     Pkinase 215 kilkilg...etkeklpeaseiseeakdllkkllkkdpkkRlt 254
                 +++k+l    +++++ ++ ++ s  + ++ k++l+ ++++ l+
  CCD22637.1  57 ETIKVLSrsqNNNFSDNNTYTDSFFLNQFAKQILSFENNTLLS 99 
                 4445554444555566666666777788888888877766555 PP

  == domain 3  score: 50.1 bits;  conditional E-value: 2.6e-17
                 EESSEEEEEEE..ETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS......CTTB--EEEEEEE............SSEEEEEEE--TTEB... CS
     Pkinase   9 eGsfGkVykav..eketgkivAvKkikkekakkkkekkvlrEikilkklk......hpnivrlyevfee............kdelylvleyvegge... 84 
                 +Gsf +Vy+ +  + +++k+    +ik  k++ k  k +l+E+ + + l+       +ni+ l+++ ++            +++ly + + +++++   
  CCD22637.1 152 HGSFTQVYELTyqNLNNDKQLSSCIIKFPKNE-KYSKFILNELLFYHYLHnnrlfpYQNIIYLKSSSSSstflpililpkyTSTLYQFIQSIQKKNiqn 249
                 57777776654112223333333333333333.333466666655444442224445666666666666444444444444333333333333332222 PP

                 ...HHHHHHHHSS--HH..HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET......TTE.........EEE-SGTTSEESSSSCS.......... CS
     Pkinase  85 ...ladllerkgslsee..eakkiakqilegleylHskgiiHrDlKpeNiLide......kge.........lKitDFGlakelesssk.......... 153
                     ++ ++++++++e      k++k +l  l+    k++iH+D+K++Ni ++e      + +         + i+D+  +k l  s++          
  CCD22637.1 250 ntcTNTTIQQSTNITEYkkLWMKLFKDLLLYLKLFNLKNVIHCDIKTSNIVLNErdihdnN-NfhynddtmiFHIIDLASSKILIPSNSnpnsnsngse 347
                 22223344444445544334557888888888988999***************75676650.1555566789************9999999******** PP

                 ..BCTTTSCGGGS-HHHH....TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHH CS
     Pkinase 154 ..ltsfvgtseYlAPEvl....keneyskkvDvWslGvilyelltgkppfsgekgkekvek 208
                     ++  t eY++PE++    +++ +s+++D++s+G+ l++++t+ +p+++ + ++ +++
  CCD22637.1 348 vnNINIESTLEYCPPEIIenkfNYKFFSSQTDLYSMGLCLLSFITKFEPYQNLSFND-NNN 407
                 88778999**********876666777************************654443.222 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.6   3.2e-11   2.9e-07       6     228 ..     149     419 ..     144     433 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3.2e-11
                  EEEEESSEEEEEEEEET.TTTSSEEEEEEEEESTTSSHHH...HHHHHHHHHHHHTS-BTTB--EEEEEESSSS..EEEEEE--TTEBHHHHHHHT.. CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkg.ekekkevkVavKtlkeeateee...keelleeakimkklkhpnivkllgvctkeep..llivteyvkgGdLlkfLrkk.. 95 
                   + +G+f++V+e t+++ +++k+  ++++K  k+e+ ++    +  +++ ++  + +  +ni+ l    +++    +li+ +y    +L +f+++   
   CCD22637.1 149 LINHGSFTQVYELTYQNlNNDKQLSSCIIKFPKNEKYSKFilnELLFYHYLHNNRLFPYQNIIYLKSSSSSSTFlpILILPKY--TSTLYQFIQSIqk 244
                  6889*************888889999*****9877666632212223333444444477777777777775444214444444..4579999988778 PP

                  ..............CTTTSBH.HHH.HHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..............TTEEEE-STTTHEET...TTSSEE. CS
  Pkinase_Tyr  96 ..............ekekltl.kdl.lsfalqvAkGmeyLeskklvHrdlaarNvLlse..............nkvvkisDfGLardi...ekddey. 159
                                +++++t  k+l +++  ++   ++  + k+++H d+ + N++l+e              +++  i D + ++ +   +++ +  
   CCD22637.1 245 kniqnntctnttiqQSTNITEyKKLwMKLFKDLLLYLKLFNLKNVIHCDIKTSNIVLNErdihdnnnfhynddTMIFHIIDLASSKILipsNSNPNSn 342
                  89********99874444443033324566777777888889*****************************987788888888777653322222222 PP

                  .....EETTSSTSGGGGS-HHHHHHSE....EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBT CS
  Pkinase_Tyr 160 .....vkkeeaklpvkWmapEslkekk....ftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpe 228
                       v++ + +  +++++pE++++k     f+s++D +s G +l   +t   +py++l+ ++  +  ++++  ++ +
   CCD22637.1 343 sngseVNNINIESTLEYCPPEIIENKFnykfFSSQTDLYSMGLCLLSFIT-KFEPYQNLSFNDNNNDCNTDRITPQSN 419
                  2222244445567789*******99888888****************999.6799*9998888777776665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1200  (0.0669307); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3204.92
//
Query:       CCD22638.1  [L=368]
Description: hypothetical protein NDAI_0A04820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-116  387.8   0.3   3.8e-116  387.2   0.3    1.3  1  Pil1      Eisosome component PIL1
     0.0029   17.3   0.1     0.0029   17.3   0.1    2.8  3  Casc1_N   Cancer susceptibility candidate 1 N-terminus
  ------ inclusion threshold ------
      0.084   13.0   0.0       0.22   11.7   0.0    1.7  1  DUF739    Protein of unknown function (DUF739)
          1    9.4   4.4        9.4    6.2   0.1    2.5  2  DUF4446   Protein of unknown function (DUF4446)
        3.7    7.3  13.3       0.92    9.3   7.4    2.1  2  CNDH2_C   Condensin II complex subunit CAP-H2 or CNDH2, C-ter


Domain annotation for each model (and alignments):
>> Pil1  Eisosome component PIL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.2   0.3  1.1e-119  3.8e-116       1     265 []       1     264 [.       1     264 [. 0.99

  Alignments for each domain:
  == domain 1  score: 387.2 bits;  conditional E-value: 1.1e-119
        Pil1   1 mnraysirsskastasesqteaspksstkskrlfslkslrsslrkqaaasfsPelarrLakLikseknlvraheaaarerksiakqlseWGedtdddvs 99 
                 m+++ys+r+ ka+tas+ +++++p++stks r+f+  +l+ ++r++aa+sf+ el+r++++L+k++kn++r++e+a++er+++a+ ls+WG ++dddvs
  CCD22638.1   1 MHKTYSLRTGKAPTASQLENPPPPRTSTKS-RFFGKGGLAYNFRTKAAGSFGAELSRKISQLVKIDKNIMRSMEVASMERRDVATYLSQWGLENDDDVS 98 
                 8*****************************.******************************************************************** PP

        Pil1 100 DvsDklgvllselgeledayadrldqsRatlKsirniEasvqpsRdkkekladeiaklkakepqserlvvlEqeLvraeaeslvaeaqlsnitReklke 198
                 D++Dk+gvl++e++el+d+++dr+dq+R+t+Ksir+iE+s+qpsRd+k+k+ d+ia +k+kep s+++ vlEqeLvraeae+lvaeaqlsnitR+k+++
  CCD22638.1  99 DLTDKIGVLIYEISELDDQFIDRYDQYRLTMKSIRDIETSIQPSRDRKDKILDKIAFMKYKEPGSQKIEVLEQELVRAEAEQLVAEAQLSNITRSKMRA 197
                 *************************************************************************************************** PP

        Pil1 199 aytaefdaliEraeKlallarygkrLlellddspvtpGetrpaYdgaeatrqiladaedaLrewrld 265
                 a++++fda+iE++eK+al+a+y+k+LlellddspvtpGetrpaYdg+ea++qi++dae aL++w+ld
  CCD22638.1 198 AFNYQFDATIEHSEKIALIAGYAKALLELLDDSPVTPGETRPAYDGYEASKQIIIDAETALNDWTLD 264
                 ****************************************************************985 PP

>> Casc1_N  Cancer susceptibility candidate 1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1     8e-07    0.0029      86     152 ..      78     135 ..      73     155 .. 0.79
   2 ?   -2.0   0.4      0.66   2.4e+03      35      46 ..     175     186 ..     162     213 .. 0.44
   3 ?   -1.9   5.2      0.64   2.3e+03      35      63 ..     288     316 ..     272     337 .. 0.51

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 8e-07
     Casc1_N  86 dekeiNtflslwseeeeedieevmetctlvlklieeLeelledtaeeelsekeveeykevilelrel 152
                 +++++ t+ls+w  e++ d+++++ ++  +++ i+eL++         +  +++++y+ +++++r++
  CCD22638.1  78 ERRDVATYLSQWGLENDDDVSDLTDKIGVLIYEISELDD---------QFIDRYDQYRLTMKSIRDI 135
                 5799*********************************33.........2334566666666666654 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.66
     Casc1_N  35 aaeqarrkeele 46 
                  ae++++++e +
  CCD22638.1 175 RAEAEQLVAEAQ 186
                 222233222222 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.64
     Casc1_N  35 aaeqarrkeeleelkplleerkealeklk 63 
                 + +++   +e+ee ++ ++e + ++e+++
  CCD22638.1 288 QDQHDGYYNEVEEEEEEVDEDEDENEDYQ 316
                 33444444444444444444444444333 PP

>> DUF739  Protein of unknown function (DUF739)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.1e-05      0.22      11      66 ..      31      86 ..      26      88 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.1e-05
      DUF739 11 kivekyGtqynf.aialgLserslslkLndkvsWkddeilkavdlLdldrekiakyf 66
                +   k G  ynf  +a g     ls k+ + v   d++i++++++  ++r+++a y+
  CCD22638.1 31 RFFGKGGLAYNFrTKAAGSFGAELSRKISQLVKI-DKNIMRSMEVASMERRDVATYL 86
                56679999****5589999999******999975.889*****************96 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0026       9.4      41      88 ..     112     159 ..      96     160 .. 0.93
   2 ?    3.8   1.0     0.015        53      25      98 ..     275     351 ..     267     354 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0026
     DUF4446  41 ksleellkekleeveelkeeseelekeieeleeklkkslqkvglvrYd 88 
                 ++l++++ +++++++   ++ +++e++i+  +++ +k l+k+++++Y+
  CCD22638.1 112 SELDDQFIDRYDQYRLTMKSIRDIETSIQPSRDRKDKILDKIAFMKYK 159
                 679999*****************************************6 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.015
     DUF4446  25 kklkkkykklmkgk.dgksleellkekleeveelkeeseelekeieeleeklkkslqkvglvrYdA..FeemGgdLS 98 
                 k+ +++ ++ ++++ +++   + ++e+ eev+e ++e+e+ ++  ++ ++  ++ +q+  +v  +    + mG++ S
  CCD22638.1 275 KQQQQNQREYQQEQdQHDGYYNEVEEEEEEVDEDEDENEDYQELHDNTDNLGNEVIQEEYIVHHQTvpLDSMGSNFS 351
                 44555555555555255567788999999999999999999999999999999999999999887522567777766 PP

>> CNDH2_C  Condensin II complex subunit CAP-H2 or CNDH2, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.3     0.063   2.2e+02     140     180 ..     122     186 ..      45     196 .. 0.55
   2 ?    9.3   7.4   0.00026      0.92      83     145 ..     274     334 ..     245     358 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.063
     CNDH2_C 140 l....................eeeeddlkeseeeee.................eeeeeeltYeeLvrqhleaflassq 180
                                                    +                  +++ e   +eLvr++ e+++a++q
  CCD22638.1 122 YdqyrltmksirdietsiqpsR-------------DrkdkildkiafmkykepGSQKIEVLEQELVRAEAEQLVAEAQ 186
                 1333333344422222222221.............0222444444444555546666666667999999999999987 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00026
     CNDH2_C  83 akerskarrklareeklkqalleeeeaeeeeevdeqeddddneaedgvdddddfgieleeeed 145
                  k++++++r+  ++e+ ++    +e +eeeeevde ++d++++++++ d++d++g+e  +ee 
  CCD22638.1 274 FKQQQQNQREY-QQEQDQHDGYYNEVEEEEEEVDE-DEDENEDYQELHDNTDNLGNEVIQEEY 334
                 46777777766.45555555555565666666766.588999999999999999999844443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1844  (0.10285); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 2820.95
//
Query:       CCD22639.1  [L=937]
Description: hypothetical protein NDAI_0A04830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-87  293.3   8.8      5e-87  292.1   8.8    1.7  1  COG4      COG4 transport protein


Domain annotation for each model (and alignments):
>> COG4  COG4 transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.1   8.8   2.8e-91     5e-87       1     334 [.     213     563 ..     213     564 .. 0.95

  Alignments for each domain:
  == domain 1  score: 292.1 bits;  conditional E-value: 2.8e-91
        COG4   1 LekaresLlelfleeFekAakenDkaeitrffkLFpligreeeGLdlYskyvceivaerarkelkseqskkdaetkagvfyanlltkLfeaiaqiveqh 99 
                 +++++ +L++lf+e+F +Aa+++D +e+t +f++Fp++g+++ GL+lYskyvc+i+a+++rk+l+ e++     + ++++y+n+l +Lf+ +++i+++h
  CCD22639.1 213 IDNWCRELTTLFKEKFITAAQKKDIDELTLMFQMFPMVGQDHLGLELYSKYVCDIIANESRKILTFEKK-----NLSNLYYSNALLHLFKIVSTIINDH 306
                 589***************************************************************955.....4599********************* PP

        COG4 100 qplvekyYgegkmlkvierLqkecDrqagiildtfeeerqldrllsdvksykfsflv............rgqfpaksseaaaasaktsnesseeeegvd 186
                 ++++  +Yg++ m++v+e+++ke+D+qag++ld f+e+r+ld++++++k++++   +            ++++ ++  e+++++++t  +ss+++  + 
  CCD22639.1 307 SKIISASYGKNYMIHVMENVEKEADLQAGLLLDIFNESRNLDQIVNNIKHWNEKYQNkdkknysikrsiSTDELQNDMENKNNNTSTIDNSSNKDIMIP 405
                 *****************************************************8888**********99888888888888888999999999999*** PP

        COG4 187 preidalleEislmlsrwelYsrFlaskleeeeeeeeeeeqeeelelpdllrssklskkv.sqellssYvpLetfylrrsvekAiqldelpsl...... 278
                 +++++ l++E+s++l++w++YsrF+++++    +e+++ + +++l+ p+ + +sk+ +k+ ++++l+s+++L  ++l++s++++i+l+elpsl      
  CCD22639.1 406 MNQLSTLINEFSQILQNWSMYSRFFSVRW----NEFSDIK-TTVLTPPKPIGDSKFRTKLvNDSYLESFEILIMYHLQKSFNNSIALEELPSLneliql 499
                 *****************************....8888766.99****************99*******************************9999999 PP

        COG4 279 .....k..assplissvvDDvfyilkkvlrralstgsvdvvsavvnavkrvlesdll.gvlqrk 334
                      +  +s  +i+sv++D+  +++k+l   +++g++dv+++++++++ ++++++l +++q+k
  CCD22639.1 500 ptfkpNkdESLIPITSVLEDLSILIRKNLISNVNSGQFDVLNKFIDNISIFIQNEFLvKFMQNK 563
                 888751579999**************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1641  (0.0915277); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 6203.73
//
Query:       CCD22640.1  [L=1331]
Description: hypothetical protein NDAI_0A04850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-25   88.9   0.1    7.7e-25   87.0   0.1    2.1  1  Forkhead        Forkhead domain
      7e-13   48.7   1.0    2.3e-12   47.1   0.3    2.4  2  FHA             FHA domain
  ------ inclusion threshold ------
      0.015   15.6   0.1        1.2    9.6   0.0    3.2  2  Linker_histone  linker histone H1 and H5 family


Domain annotation for each model (and alignments):
>> Forkhead  Forkhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.1   1.3e-28   7.7e-25       2      83 ..     800     878 ..     799     882 .. 0.94

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 1.3e-28
                 -----HHHHHHHHHHT.-TTT-B-HHHHHHHHHCC-HHHHCC.-CCHHHHHHHHHHHHC--EEETT.-TTSS--EEE--TTHH CS
    Forkhead   2 kPpysYaaLIaqAiks.spekkltLseIyefieenfpyyrtaakkgWqnSirhnLslnkcFekvpreeeegkgslwtidpese 83 
                 kP ysY+a+ +  i++ s+ + ++LseIy+ i+e fpyy++  ++gWq+S+rhnLslnk+F+kv++   egkg+lw +d+++ 
  CCD22640.1 800 KPAYSYSAMLTTCIRKySNANGMSLSEIYAGIRELFPYYKY-CPDGWQSSVRHNLSLNKSFRKVSK---EGKGWLWGLDENYI 878
                 9**************989999********************.5**********************8...59********9865 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         3   1.8e+04      15      23 ..     428     436 ..     416     448 .. 0.67
   2 !   47.1   0.3   3.8e-16   2.3e-12       2      69 .]     625     698 ..     624     698 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3
                 STTSTTTEE CS
         FHA  15 dpsiSrkHa 23 
                 ++s+Sr H 
  CCD22640.1 428 QSSVSRGHT 436
                 689999996 PP

  == domain 2  score: 47.1 bits;  conditional E-value: 3.8e-16
                 EEESSTTSSEETT.......STTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA   2 tiGRssdcdivld.......dpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 +iGR s++d+  +       ++siSr+Ha+i+++ g+g+++l  +g knG fv+++ +++g++v+L++++ i++G
  CCD22640.1 625 IIGRRSENDFSHKvdvnlgpSKSISRRHAQIFYNFGTGRFELSIIG-KNGAFVDDVFVERGNTVPLRNKTKIQIG 698
                 69***9999996666888889***********************98.**************************98 PP

>> Linker_histone  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0002       1.2       3      36 ..     804     837 ..     802     867 .. 0.75
   2 ?    2.4   0.1     0.033     2e+02      16      35 ..     975     994 ..     959    1011 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0002
  Linker_histone   3 sykdMikeAIkalkerkGsSrqaIkkyikakykv 36 
                     sy+ M++++I +  + +G+S+  I   i++ +++
      CCD22640.1 804 SYSAMLTTCIRKYSNANGMSLSEIYAGIRELFPY 837
                     89***********************999987665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.033
  Linker_histone  16 kerkGsSrqaIkkyikakyk 35 
                      +rkG S q+I   +++   
      CCD22640.1 975 RDRKGLSKQTITTILTQALA 994
                     57*********998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3302  (0.184171); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                       257  (0.0143343); expected 17.9 (0.001)
Passed Fwd filter:                       113  (0.00630264); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 3.68u 0.47s 00:00:04.15 Elapsed: 00:00:00.90
# Mc/sec: 4447.26
//
Query:       CCD22641.1  [L=287]
Description: hypothetical protein NDAI_0A04860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-48  163.1   0.1      6e-48  162.9   0.1    1.1  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.1   3.3e-52     6e-48       1     190 []      72     255 ..      72     255 .. 0.96

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 3.3e-52
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 +++Gtt++++++k+g+v+a+d+ratag+ + +++tv+K+++i++ ++ ++aG aaD++ +  ++ ++++l++l+++ +i+v      +a+k+++++ ++
  CCD22641.1  72 IAHGTTTLAFRFKGGIVVAVDSRATAGNWV-ASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELKEKNRISVA-----AASKILSNLVYQ 164
                 579***************************.7777***********************************************.....*********999 PP

                 TTTTTS.EEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 100 grrpfg.vslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 +++  + ++++i+g+ +++gp +y++d +G+ ++ +  +++Gsg+++a+++l+++yk dlt+eea+ l ++++ +a++rd++sg+ i++++i
  CCD22641.1 165 YKGAGLsMGTMICGYTKKEGPTIYYVDSDGTRLQGD-LFCVGSGQTFAYGVLDSNYKWDLTVEEALYLGKRSILAAAHRDAYSGGSINLYHI 255
                 99776449***************************6.***************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2178.40
//
Query:       CCD22642.1  [L=174]
Description: hypothetical protein NDAI_0A04870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-22   79.5   0.0    2.5e-22   78.9   0.0    1.4  1  Ribosomal_L5_C  ribosomal L5P family C-terminus
    5.4e-20   71.5   0.1    1.7e-19   69.8   0.0    1.9  2  Ribosomal_L5    Ribosomal protein L5
     0.0077   15.9   0.0      0.015   15.0   0.0    1.5  1  HTH_ABP1_N      Fission yeast centromere protein N-terminal d


Domain annotation for each model (and alignments):
>> Ribosomal_L5_C  ribosomal L5P family C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   4.2e-26   2.5e-22       1      81 [.      64     140 ..      64     162 .. 0.87

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 4.2e-26
  Ribosomal_L5_C   1 piGvkvtLrgekmyefldkllevvlprlrdFkGiskssfdgrGnvsfGikeqiifpeieydkdkgifGmditivttak...tde 81 
                     +i+v+vt+rg+k++e+l++ l+v++++lr      +++f+++Gn++fGi+e+i++ +i+yd+++gifGmd+++v+ ++   +++
      CCD22642.1  64 KIAVHVTVRGPKAEEILERGLKVKEYQLR------NKNFSATGNFGFGIQEHIDL-GIKYDPSIGIFGMDFYVVMGRPgarVAR 140
                     69***************************......********************.*********************9554333 PP

>> Ribosomal_L5  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   2.9e-23   1.7e-19       1      57 []       7      60 ..       7      60 .. 1.00
   2 ?   -1.9   0.0      0.72   4.3e+03       9      18 ..      63      72 ..      63      85 .. 0.73

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 2.9e-23
                  SCTTS-EEEEEEEEEE-SSSSSCHHHHHCCHHHHCCCHSS--EECC--TTCTTTCSC CS
  Ribosomal_L5  1 NvMqvPrleKivinmgvGeagedkkllekaakeLaeItGQkPvvtkakksianFkiR 57
                  NvM+  ++eK+v+n+ vGe+g++   l++a k+L++++GQ+Pv++ka++++++F+iR
    CCD22642.1  7 NVMRDLKIEKLVLNISVGESGDR---LTRASKVLEQLSGQTPVQSKARYTVRTFGIR 60
                  9**********************...******************************9 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.72
                  EEEEEEEE-S CS
  Ribosomal_L5  9 eKivinmgvG 18
                  eKi +++ v 
    CCD22642.1 63 EKIAVHVTVR 72
                  7999998885 PP

>> HTH_ABP1_N  Fission yeast centromere protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.6e-06     0.015       9      39 ..     140     169 ..     135     173 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.6e-06
  HTH_ABP1_N   9 qkkaLRawafqqnprpsqkaliaWFeqeygq 39 
                 ++k  R+    ++++ s+++ iaWF+q+y+ 
  CCD22642.1 140 RRKRCRSTV-GNSHKTSKEDTIAWFKQKYDA 169
                 688889886.888****************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       389  (0.0216967); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1286.94
//
Query:       CCD22643.1  [L=211]
Description: hypothetical protein NDAI_0A04880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-06   25.7  12.9    6.8e-05   22.7  12.9    2.2  1  BCAS2     Breast carcinoma amplified sequence 2 (BCAS2)


Domain annotation for each model (and alignments):
>> BCAS2  Breast carcinoma amplified sequence 2 (BCAS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7  12.9   3.8e-09   6.8e-05       4     181 ..       2     203 ..       1     208 [. 0.79

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3.8e-09
       BCAS2   4 DaLPYiDaeletpelreaveklieeElrrsrkkksdlaelPppkeekl.............espllaaeleRveag.e..................... 67 
                 D LP+iD e  +++  ++vek+i++E ++++k+k + ++l p+  + l             +++ll + ++  +++ +                     
  CCD22643.1   2 DYLPFIDSEDYDADSISQVEKEIKREYAQIEKDKDEDTNLHPEVIK-LlnlwkvptttshfDTELLDEYMNPRKRKfDenedgdededaleerileics 99 
                 78*****98669********************99985555555433.2344555555555588888776653333331445666777777777777777 PP

       BCAS2  68 .plealDlsRYeleaPsaekkedleaweealrnakaqlehqalRqeNleLlekygknaWrvhneqleaelkklekeleetkeeieevnrqRkseQeeag 165
                  + + +DlsRY l+ ++          ee+l  ++a  ehq++  +    l+k  +n+W ++ne +++  ++l+  le+ +++  ++ + R ++Q + +
  CCD22643.1 100 kKYPRIDLSRYFLNSDD----------EESLCITHAYIEHQEVLLKD--CLSKTLTNQWAINNEFIKESNANLNLILEKENKNLVDLMKYRENAQLKNK 186
                 79999********8886..........35677778888999998886..599999******************************************** PP

       BCAS2 166 eeLksleekWre.lvsk 181
                     +l++kW++ l+++
  CCD22643.1 187 PIFDKLKQKWKDnLIQN 203
                 **********9624554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1426  (0.0795359); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 1689.17
//
Query:       CCD22644.1  [L=140]
Description: hypothetical protein NDAI_0A04890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-13   48.5   0.4    1.2e-12   47.6   0.4    1.5  1  L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI


Domain annotation for each model (and alignments):
>> L51_S25_CI-B8  Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.4   6.4e-17   1.2e-12       1      51 [.      40      90 ..      40      91 .. 0.98

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 6.4e-17
                   HHHHH.TTTTHHHHTT-TTSEEEEEESS-SS-EEEEE-SS--B--EE-SS-- CS
  L51_S25_CI-B8  1 aRkFw.rknLprlkykNPavpivvrrrsgdgPallaiYfngrektidlknkn 51
                   +R+F+ +k+L +l++++P +++ v ++sg +P l+a+Y+n rek+i+++n+n
     CCD22644.1 40 MRDFLmSKRLDKLAKQYPFIQFHVMKKSG-HPILRAEYNNNREKVICVRNLN 90
                   8****************************.9*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1033.49
//
Query:       CCD22645.1  [L=165]
Description: hypothetical protein NDAI_0A04900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-21   75.5   0.6    3.3e-21   75.5   0.6    1.4  2  DUF4149   Domain of unknown function (DUF4149)


Domain annotation for each model (and alignments):
>> DUF4149  Domain of unknown function (DUF4149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.6   1.8e-25   3.3e-21       1     101 [.      11     104 ..      11     105 .. 0.96
   2 ?   -3.0   0.0      0.51   9.2e+03      56      56 ..     144     144 ..     128     157 .. 0.52

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 1.8e-25
     DUF4149   1 lslglllGsqlwvtfvvapvlfrsLprhqfgelqsklFplyfglglalsvlllltevavgseklaseellqlllllvvllltllnafylepritslkeq 99 
                 l++++++G++++++++++p++f++L+r+qf++lq+++Fp++f+l ++++++l+lt++++         +  ++ l+++ l++l n  +l p++ s+ke+
  CCD22645.1  11 LFYSFAFGGTTFYSYFASPIAFKVLEREQFSKLQNNIFPYFFQLEAISPLILALTSPFSL-------TQGPIITLTMATLSGLTNLCWLLPWTRSIKEE 102
                 6799*****************************************************866.......789****************************9 PP

     DUF4149 100 re 101
                 r+
  CCD22645.1 103 RK 104
                 97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.51
     DUF4149  56 e 56 
                 +
  CCD22645.1 144 H 144
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1365.12
//
Query:       CCD22646.1  [L=204]
Description: hypothetical protein NDAI_0A04910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-35  121.7   0.7    2.8e-35  121.2   0.7    1.1  1  MAS20     MAS20 protein import receptor
  ------ inclusion threshold ------
      0.054   12.5   0.1      0.065   12.3   0.1    1.1  1  DUF4015   Putative glycosyl hydrolase domain


Domain annotation for each model (and alignments):
>> MAS20  MAS20 protein import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.7   3.1e-39   2.8e-35       3     127 ..      17     146 ..      15     148 .. 0.90

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 3.1e-39
       MAS20   3 vaaaaflgYcvYFDrkRrsdpefkkklrerrkkqakaakeeeeaekaekkk..kealeeakee..lptdaeevekfFleevqlGEellaq.geeeeaae 96 
                 v+ a++  Y+vYFD++Rr++p+f+k+lr++ kk+ak+ + +++++++e  +  +e+l+++  +  +  d+e++e++F ++v++GE+l  q g+e e+a+
  CCD22646.1  17 VVIASIGCYAVYFDYQRRKNPHFRKELRKKLKKEAKELEISKKKAEEEFLAkiREFLTQDLLNdpISMDPEKREEIFASNVEMGERLTIQpGQEIESAS 115
                 56677888**************************988766666666666558988888888776888******************************** PP

       MAS20  97 hlynAlkvcpqPqeLlqilqktlPeevfell 127
                 ++y+Al v+p+P++Ll+i+q+t+Pe+++e++
  CCD22646.1 116 KFYRALCVYPKPTDLLKIYQRTIPENIYEIV 146
                 *****************************98 PP

>> DUF4015  Putative glycosyl hydrolase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.2e-06     0.065     127     217 ..      13     117 ..       4     152 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.2e-06
                 HHHHHHHHHHT-SEEEEE--S---------EE---TT--......HHHHHHHHHHHHHHHST....T--EE-B......GGGT--XXXXXXXX..XXXX CS
     DUF4015 127 ieiAkeaaelGfdeiqfDYvRfpedskkkeleyseeeteee....rveaisdflayareeles..ygvfvsvd......vfGyvvtveddeei..gQnl 211
                 i+ +  +a++G   + fDY R  + + +kel+ + +++ +e    + +a ++fla+ re l++   + ++s+d      +f+ +v++ +  +i  gQ++
  CCD22646.1  13 ITTSVVIASIGCYAVYFDYQRRKNPHFRKELRKKLKKEAKEleisKKKAEEEFLAKIREFLTQdlLNDPISMDpekreeIFASNVEMGERLTIqpGQEI 111
                 566677899************999555555555555554444444788888888888887755123445665544444477777777666655556777 PP

                 XXXXXX CS
     DUF4015 212 ekiaee 217
                 e+ ++ 
  CCD22646.1 112 ESASKF 117
                 666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1728  (0.0963802); expected 358.6 (0.02)
Passed bias filter:                      988  (0.0551063); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 1649.75
//
Query:       CCD22647.1  [L=1161]
Description: hypothetical protein NDAI_0A04920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-124  416.0  14.4     1e-124  416.0  14.4    2.5  3  DUF3818          Domain of unknown function in PX-proteins (D
    1.7e-38  131.6   1.8    1.7e-38  131.6   1.8    2.6  2  PXB              PX-associated
    7.2e-10   38.8   8.6    1.5e-09   37.8   4.1    3.3  2  PX               PX domain
     0.0072   16.6  13.1     0.0072   16.6  13.1    2.5  2  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3
  ------ inclusion threshold ------
       0.37   10.1  24.1       0.71    9.1  24.1    1.4  1  NOA36            NOA36 protein
        1.2    9.1  15.6       0.19   11.7  10.1    2.3  2  TFIIA            Transcription factor IIA, alpha/beta subunit
        5.8    6.8   6.4       0.57   10.1   1.1    2.0  2  RNaseH_like      Ribonuclease H-like


Domain annotation for each model (and alignments):
>> DUF3818  Domain of unknown function in PX-proteins (DUF3818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.6      0.57   1.5e+03     206     243 ..     535     589 ..     489     639 .. 0.64
   2 !  416.0  14.4    4e-128    1e-124       2     338 ..     654    1006 ..     653    1007 .. 0.97
   3 ?   -4.0   0.3       2.3   5.8e+03     121     140 ..    1037    1060 ..    1017    1074 .. 0.39

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.57
     DUF3818 206 e...............lfedlkellklylrerDkellikllqepelse..llkdi 243
                                 + +++ +l+   lr+  ++ l++l q++e+s   llk++
  CCD22647.1 535 DgdddddddddvfedaVDSKTDRLVSERLRTSLRQYLRNLCQDKEISSslLLKKF 589
                 0233344445555665444555666666666666666666666666532244444 PP

  == domain 2  score: 416.0 bits;  conditional E-value: 4e-128
     DUF3818    2 LsklfeeikekesieelspelkkliewarielAstlyqvFvgsdnsselfaqlkrlhklmPYfllkqiLritNpmaimkglldLfLaqPfggrsLlq 98  
                  ++++f+eik+k++i+elsp lk+++ew++++l+s++yq+F+g+dns+++++q++rlhklmPY+++ qi+r+tNpmaimkg++dLf+aqPfgg+sLlq
  CCD22647.1  654 IKDIFKEIKTKRNISELSPLLKDFVEWCKVYLSSIIYQIFLGNDNSYGFYTQIRRLHKLMPYTIMGQIMRVTNPMAIMKGMIDLFMAQPFGGQSLLQ 750 
                  578********************************************************************************************** PP

     DUF3818   99 rifstilnedlkelekeikelekkidk....seelieklkkfveasee.....eqeeireeseeekl.dllvvilrseelpklskeqleeviesyka 185 
                  ++fstil++dlk+++ +ik+le ki +    s+e+i++lk +++++++     +++ei+ es+++++  ++++++++++ + +s+++l+ev esy++
  CCD22647.1  751 KMFSTILTDDLKNQKVIIKSLEVKILNeaksSNEVIKCLKSVIFEDDKknksiDMHEIHLESDSMEMpVVVLLLMKCSDWKIISHNALTEVLESYNR 847 
                  *************************999**9**************98889999**************88888999********************** PP

     DUF3818  186 ykeakkeeksa....sekeenedaelfedlkellklylrerDkellikllqepelsellkdiitifyeplvrvykaanisdalkdfqkFlndliklv 278 
                  +k  +k+ +++    ++ e+++d  +f d+k+llkly++erDk+l+++l+q+pels+llk+++t++yep+v+v+k+a++++alk+f++F+ndlikl+
  CCD22647.1  848 WKINEKNAQENadiiTDYEHSNDGVYFDDIKKLLKLYIKERDKRLMRQLWQDPELSRLLKATVTLIYEPMVKVFKIAKVEVALKNFERFMNDLIKLI 944 
                  *888777777788889999999999************************************************************************ PP

     DUF3818  279 eklkneeqe.sdpanvvqafidLvdrhedsfykFvhevyvkdee.lfdelikWiekilkflr 338 
                  ++++n++ +  + +n+v+++ +Lv+rh+dsf++Fvh+vy +d+e +f+++++Wi++i kfl+
  CCD22647.1  945 DETINGQLGiVTGFNIVDSIYNLVTRHQDSFFEFVHDVYLHDTEgIFEGFVTWITEITKFLQ 1006
                  *******999**************************************************98 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 2.3
     DUF3818  121 kkidk...seeliekl.kkfveas 140 
                  ++id+   ++ +++kl kk v+a+
  CCD22647.1 1037 QQIDNvikKKLVTRKLyKKLVDAK 1060
                  222222222222222212333333 PP

>> PXB  PX-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   1.8   6.6e-42   1.7e-38       4     130 .]      22     193 ..      19     193 .. 0.91
   2 ?   -0.9   0.3      0.61   1.6e+03      91     112 ..     436     457 ..     435     470 .. 0.79

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 6.6e-42
         PXB   4 eLtplqehyLkkiLihlelykElealkdpdalsklGyPFkse.........................................eke..kkekkeaesse 59 
                  L++ + hyLk++L++++l+kEl++++++dal+++G+PF+++                                         e +   +e++e   ++
  CCD22647.1  22 FLNAIEGHYLKRELLKYQLHKELDEFNKKDALRNFGFPFTKDdpkvskskpntkskltnlpkarrslsrsssmkssssskhiqE-RggIHENDEIVLTK 119
                 69999*****************************************************************99998887666641.2332223335667* PP

         PXB  60 lPllrfllrefvltfPfl...kalpkefWqdkvqpfleslaeanlSesydkgeltkrkklatklskllellvrs 130
                 +P+++++l+ef++t+P+l    a++++fWq kvq+f+e++++  +Sesyd++++tkrkk++tklsk++ ll++s
  CCD22647.1 120 FPMCSYILQEFIMTLPLLsknIAIDESFWQGKVQVFFEHFMSLGFSESYDRATMTKRKKISTKLSKIILLLFNS 193
                 ******************988899***********************************************997 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.61
         PXB  91 pfleslaeanlSesydkgeltk 112
                 ++++s+ ++nlS+s   g+ ++
  CCD22647.1 436 TIVASFESENLSSSASSGNSSS 457
                 5899**********98887655 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   4.1   5.9e-13   1.5e-09      17     112 ..     345     592 ..     331     593 .. 0.96
   2 ?   -3.1   0.1       2.9   7.5e+03      39      57 ..     611     633 ..     609     677 .. 0.67

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 5.9e-13
                 SSEEEEEEEEEETTS...SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSS........................................ CS
          PX  17 kkhsyylyevelktg...akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsv........................................ 72 
                 ++++y++ +++l+++   ++   v + Y++F +L + L++++p+ k+P lP+k     +                                        
  CCD22647.1 345 RHGRYFILKIKLEDSpdeSQPIYVAKTYHHFKHLSHLLKKQYPGKKLPRLPHKTKK--Sisvvtrvdsnsnssrsnsnrsggkyrsgtglpretivasf 441
                 7899************9999********************************9944..34689************************************ PP

                 ................................................................................................... CS
          PX  73 ................................................................................................... 72 
                                                                                                                    
  CCD22647.1 442 esenlsssassgnssslslsdknlenfihpsslhmtsnniaignieneededdddnpselgtqidilsirkneetaaeedqdedeeededddddgdddd 540
                 *************************************************************************************************** PP

                 ............CTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHHS CS
          PX  73 ............rkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLev 112
                              k d+ + e+ r +L +yL++l++++e+++s  l++FL++
  CCD22647.1 541 dddddvfedavdSKTDRLVSERLRTSLRQYLRNLCQDKEISSSLLLKKFLSE 592
                 ***********9888999999999**************************87 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.9
                 EEHHHHHHHHHHHHHHHT....T CS
          PX  39 RrYsdFeeLhskLlrkfp....r 57 
                 R   d+ +L ++L+++++    +
  CCD22647.1 611 RELVDINNLETQLKFQKValekS 633
                 55667888888888888744441 PP

>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.53   1.4e+03      68     141 ..     256     323 ..     246     364 .. 0.69
   2 !   16.6  13.1   2.8e-06    0.0072     131     214 ..     469     545 ..     389     549 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.53
  RNA_pol_3_Rpc31  68 hdgpfytqkrtkkslsaeekes..kkgakekatfdpftgierYsdkylkkertlpklderpyvkefFPkELwptlk 141
                       +++++   ++k++  +    +  k +  + ++  p+ + + Y++k +k  + + k+ +   +    P +L ++l 
       CCD22647.1 256 EESALF---SNKNN--NI---GkeKSQPISSSKNKPISAYSYYTNKSMKSLSSTSKWMKNTLAIPTSPTSLFSKLS 323
                      566666...22221..11...1222333333444788899999999999999999998888888888888888874 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 2.8e-06
  RNA_pol_3_Rpc31 131 fFPkELwptlkdgkdekkeikgkskkkkeadeedeegkelleklkelaeeeddeeekkekedeeeeeeeeeddefddddedggD 214
                      + P +L+ t + +     +i++ +   +e++++d++ +el  +++ l  ++++e+ ++e +de+eee+e+ dd+ dddd+d++D
       CCD22647.1 469 IHPSSLHMTSN-NI----AIGNIE--NEEDEDDDDNPSELGTQIDILSIRKNEETAAEEDQDEDEEEDEDDDDDGDDDDDDDDD 545
                      44666666663.11....122222..2244566666677777777444444443333333333333345666666666666666 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  24.1   0.00028      0.71     230     302 ..     478     546 ..     469     554 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00028
       NOA36 230 trslkfgrqkqadgsddddddeedsdydaylkalasgddeddegdedddddddeedddeeeddedeeeeeeee 302
                 + +   g  +   +++d+ddd++ s+ +++ + l+   +++++++e+d+d+d+eed+d+++d++d+++++++ 
  CCD22647.1 478 SNNIAIGNIE---NEEDEDDDDNPSELGTQIDILSIR-KNEETAAEEDQDEDEEEDEDDDDDGDDDDDDDDDV 546
                 5555555544...556666677888888888888775.44444444444444445555555444444444443 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  10.1   7.6e-05      0.19     257     367 ..     421     546 ..     206     557 .. 0.44
   2 ?   -0.7   0.2      0.42   1.1e+03     258     312 ..    1018    1074 ..    1004    1136 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.6e-05
       TFIIA 257 legelsaeeeagaqkeelsreeidri.reealkakelekeskkkkraeessla.....................dlseilqlDGagddsde........ 325
                   g ++++ +   +++ + + e +++  + ++ +++                +                     +   i  +  ++d++d+        
  CCD22647.1 421 RSGGKYRSGTGLPRETIVASFESENLsSSASSGNSS----------------SlslsdknlenfihpsslhmtsNNIAIGNIENEEDEDDDdnpselgt 503
                 223333333333333333333333331111111111................01111222222333333334334445555566666655566677776 PP

       TFIIA 326 ........eeeeeesdedsdsessddedeqveEDplNSdDDvddeddddl 367
                         +      +e++  e+++dede+++ED+   +DD dd+dd d+
  CCD22647.1 504 qidilsirK------NEETAAEEDQDEDEEEDEDDDDDGDDDDDDDD-DV 546
                 654443331......22222233333444444554344444443332.33 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.42
       TFIIA  258 egelsaeeeagaqkeelsreeidri.re....ealkakelekeskkkkr.aeessladlse 312 
                  +++ + +e+  + ++ l r++id++ ++         k ++k   +k++ +++s +++++ 
  CCD22647.1 1018 NFNELLRETGSQVDKDLLRQQIDNViKKklvtR----KLYKKLVDAKQKhQKNSFKKTANG 1074
                  444444555555667888899999966644441....333332222222111122222222 PP

>> RNaseH_like  Ribonuclease H-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.4         2     5e+03      72     115 ..     627     669 ..     605     674 .. 0.68
   2 ?   10.1   1.1   0.00022      0.57      58     102 ..     766     811 ..     760     817 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2
  RNaseH_like  72 slslevaskleellleakkkkaelkleihi.DiGengktkelike 115
                  +++le   kl+e +++   k   l+ e hi Di ++ ktk+ i+e
   CCD22647.1 627 KVALEKSLKLQESMKHL--KMSLLEDENHIkDIFKEIKTKRNISE 669
                  45666667777777444..66667778887788888999888887 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00022
  RNaseH_like  58 rkikslrekiflEtslslevaskleellleakkkkaelkl.eihiD 102
                    iksl+ ki+ E++ s ev++ l++++ e  kk++++++ eih+ 
   CCD22647.1 766 VIIKSLEVKILNEAKSSNEVIKCLKSVIFEDDKKNKSIDMhEIHLE 811
                  5689**********************99898888888876478875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1661  (0.0926432); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.96u 0.27s 00:00:01.23 Elapsed: 00:00:00.44
# Mc/sec: 7932.11
//
Query:       CCD22648.1  [L=1130]
Description: hypothetical protein NDAI_0A04930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-27   95.8   6.0    4.6e-27   94.9   3.7    2.5  3  Sec7      Sec7 domain


Domain annotation for each model (and alignments):
>> Sec7  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   3.7   2.6e-31   4.6e-27      49     179 ..     465     605 ..     450     609 .. 0.87
   2 ?   -1.0   0.0     0.066   1.2e+03     132     160 ..     902     936 ..     881     951 .. 0.80
   3 ?   -2.8   0.0      0.25   4.4e+03      61     102 ..     956     998 ..     919    1001 .. 0.60

  Alignments for each domain:
  == domain 1  score: 94.9 bits;  conditional E-value: 2.6e-31
                 HHHHHHHCSGG.HHHHHHHHHHHC.TS--TT--HHHHHHHHCCCS-B-SSHHHHHHHHHHHHHHHHHTTCTCG......-SHHHHHHHHHHHHHHHHHH CS
        Sec7  49 kklGeylgkek.efnkevlkefvd.lfdfsglrldeAlRlflssfrlpgEaqkierilekFaekyfeqnpevf......enadavfvLaysiimLntdl 139
                 k +G +l+k++ ef+++ l+ f++  fdf++ ++d AlR++l  ++lp+E+q+i+r+l +F++ y++++++ f      +++++v+ +++s++mL+td 
  CCD22648.1 465 KFIGVILTKKDdEFQRKTLNYFLTnHFDFENDPIDVALRKILMFLELPKESQQIDRLLIEFSNVYYKEQRDHFknkcawKDENQVYFITFSLLMLHTDY 563
                 5688888866659*********96378***************************************8776665222233777***************** PP

                 C-TTSCCS--HHHHHHCTTT..TBTTB---HHHHHHHHHHHH CS
        Sec7 140 hnpqvkkkmtledFiknnrg..indgkdlpeefLeeiYdsIk 179
                  np+ k+km++edF++ ++g  + +g+++p ++L   Y++I 
  CCD22648.1 564 FNPNNKNKMSKEDFVSLVHGdeYSGGNKIPLDILFYYYENII 605
                 ******************987689999***********9996 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.066
                 HHHHHHHHC......-TTSCCS--HHHHHHCTTTT CS
        Sec7 132 iimLntdlh......npqvkkkmtledFiknnrgi 160
                 ii L  d        n++++++ t++d +knn+g+
  CCD22648.1 902 IIGLTEDSNdtgansNTNANSSNTIDDLVKNNKGC 936
                 56666665555554466669999**********98 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.25
                 HHHHHHHHHHCTS--TT--HH.HHHHHHCCCS-B-SSHHHHHH CS
        Sec7  61 fnkevlkefvdlfdfsglrld.eAlRlflssfrlpgEaqkier 102
                   ++ +++  ++ +f+g++    +lR +++sfr  +  +k +r
  CCD22648.1 956 ETENWIDSINSMASFEGCNYNfGCLRNTITSFRKYEVKEKYDR 998
                 3334444445555666665542577888888876666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1498  (0.0835518); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.25s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 7863.08
//
Query:       CCD22649.1  [L=108]
Description: hypothetical protein NDAI_0A04940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-51  172.5  14.9    2.3e-51  172.3  14.9    1.0  1  PHF5      PHF5-like protein


Domain annotation for each model (and alignments):
>> PHF5  PHF5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3  14.9   1.3e-55   2.3e-51       1     103 [.       1     103 [.       1     104 [. 0.99

  Alignments for each domain:
  == domain 1  score: 172.3 bits;  conditional E-value: 1.3e-55
        PHF5   1 msrhqadlvlcrkqpGtaigklcekcdgkcpicdslvkpatkvricdecsfgkleekciicgskgvsdayyclecvrlekdrdGcpriinvgssktdll 99 
                 msrhq+dlv+c+kqpGt+ig lcekcdgkcpicds+++p++kv+ic++c+fgk+ ++ciicg+ g+++ayyc+ec+++ekdrdGcp+iin+gs++td++
  CCD22649.1   1 MSRHQFDLVMCMKQPGTHIGLLCEKCDGKCPICDSYIRPKNKVKICHNCAFGKSGSSCIICGNPGINKAYYCWECCKQEKDRDGCPKIINIGSNRTDKY 99 
                 9************************************************************************************************** PP

        PHF5 100 yekk 103
                 +ekk
  CCD22649.1 100 FEKK 103
                 **98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 803.74
//
Query:       CCD22650.1  [L=845]
Description: hypothetical protein NDAI_0A04950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-08   32.5   0.1    4.5e-08   32.5   0.1    2.7  3  MMM1      Maintenance of mitochondrial morphology protein 1
    1.5e-06   28.6   0.0    1.5e-06   28.6   0.0    3.2  3  PH_11     Pleckstrin homology domain
    9.6e-06   26.1   4.5    1.2e-05   25.7   0.3    3.1  3  PH        PH domain


Domain annotation for each model (and alignments):
>> MMM1  Maintenance of mitochondrial morphology protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   7.6e-12   4.5e-08     102     230 ..     305     431 ..     228     448 .. 0.81
   2 ?   -5.1   4.3       2.2   1.3e+04      82      82 ..     562     562 ..     511     635 .. 0.52
   3 ?   -2.4   0.5      0.32   1.9e+03      48      81 ..     629     662 ..     595     678 .. 0.44

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 7.6e-12
                 -B--HHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHGGCS-TTEEEEEEEEEE--S---EEEEEEE.EE-TTTTSS-EEEEEEEEEEEEEEEEEEEEE CS
        MMM1 102 pesLDWfnvLiaqtiaqfreealekdnilksLnealnseelpdyldkikvteidlGedfPifsncriikeskesekkrLeakidvdlsDtltlgietkL 200
                   +  Wfn Li +    ++++   ++++l+ +++ l++ ++p +ld+  + ++d+G   P   n  + +    s+++  +   d++   +l++ i tk+
  CCD22650.1 305 QLTTKWFNALIGRLFLSLQRTDSLNKALLEKIDKKLTKINKPGFLDDFVIEQVDVGTSAPFVTNPSLRE-I--STEGLTKIAFDLQYRGNLSIIISTKV 400
                 33568*************9999999******************************************33.3..334555566788888*********** PP

                 EESSSSSS.EE---EEEEEEEEEEEEEEEEE CS
        MMM1 201 llnyPkpl.tavLPvalavsvvrfsgtLtvs 230
                  +n   ++ t  + ++l++ v   sg + v 
  CCD22650.1 401 NINLGSRFkTREVSLKLSIKVKEISGPMLVL 431
                 ***9765515678888888888888877664 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 2.2
                 . CS
        MMM1  82 s 82 
                 +
  CCD22650.1 562 N 562
                 1 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.32
                 XXXXXXXXXXXXXXXXXX.XXXXX-HHH...... CS
        MMM1  48 skkklssvikkkkkekeessedleekkssnvvee 81 
                  k++++++ k  +++ ++ +ed ++++s+ ++e+
  CCD22650.1 629 IKTSFKKIGKWYSEKVNNLNEDDNNEQSNLITEN 662
                 2222223223333333333344444433333222 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   2.5e-10   1.5e-06       8     104 ..     131     247 ..     127     248 .. 0.79
   2 ?   -0.4   0.3      0.26   1.6e+03      49      83 ..     505     543 ..     502     587 .. 0.70
   3 ?   -2.3   0.7         1   6.1e+03      40      69 ..     628     661 ..     601     682 .. 0.62

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2.5e-10
       PH_11   8 kgskaWkrrwfavlkdgvLeyYksekkkv.vkhviklSngseaklkadlisaalf............kidsirs..sksddllleistetki....... 84 
                 + +k  k+++ avlk+g+L++Yk+++ k  + h i l    + ++++d  +  l              +++i++  ++++ l++++ ++t +       
  CCD22650.1 131 QLKK--KHKFYAVLKHGNLFLYKDDEPKSnLIHAIALVGTFVTIWPRDPKQEMLDaslftkktcialFKNNIAAfsPQENTLQFKAINSTPTstptadq 227
                 6678..9****************877776599*************998665555455668777766634444446677777777777777778899*** PP

       PH_11  85 fflkgdsneeteeWvealke 104
                 f+l+ ++n ++e+W+++l++
  CCD22650.1 228 FYLYFENNSDKEDWYFQLIN 247
                 99**************9986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.26
       PH_11  49 aklkadlisaalfkidsirs....sksddllleistetk 83 
                 ++++  ++s  ++ +++i+s    +++++ +++ s e k
  CCD22650.1 505 GIWEKHIVSTWNPDDKKIQSpsreNTKNSYDTTTSHEKK 543
                 567777777777766666665455666666666666655 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1
       PH_11  40 viklSngseaklkadlisaalfkidsirs....s 69 
                  ik S  + +k+  + +++ +  +++ +s    +
  CCD22650.1 628 YIKTSFKKIGKWYSEKVNNLNEDDNNEQSnlitE 661
                 3566666666776666666666555555533321 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.3     2e-09   1.2e-05      15     104 ..     133     249 ..     120     250 .. 0.63
   2 ?   -0.2   0.1      0.24   1.4e+03      17      77 ..     479     541 ..     467     555 .. 0.77
   3 ?   -3.6   0.0       2.6   1.6e+04      40      67 ..     738     767 ..     732     774 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2e-09
                 SCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC.........................TTSSSSTSEEEEEESTSSS.....TEEE CS
          PH  15 kkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevva.........................tedpkrkfcfelriverng.....srty 83 
                 k + +k ++vLk ++l++yk+d  e+++++ + i l ++ v+  +                           + ++++++++++  ++++      +++
  CCD22650.1 133 K-KKHKFYAVLKHGNLFLYKDD--EPKSNLIHAIALVGTFVTIWPRdpkqemldaslftkktcialfknniAAFSPQENTLQFKAINSTPtstptADQF 228
                 3.7899****************..555555555555555555444445555554222222222222223544466666666665555555443344*** PP

                 EEEESSHHHHHHHHHHHHHHH CS
          PH  84 llqasseeerkeWikaiqsai 104
                 +l++++++++++W+ ++++a 
  CCD22650.1 229 YLYFENNSDKEDWYFQLINAT 249
                 **************9999876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.24
                 SEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC......TTSSSSTSEEEEEESTS CS
          PH  17 swkkrwfvLkdsellyykndksekdkepkgsislsncevvevva......tedpkrkfcfelriver 77 
                   k+  +v + ++l++++      d+  +g i  + ++++  ++      ++++++k+++  +++++
  CCD22650.1 479 AIKESLVVPFMDDLVFFDTG----DEIFRGGIWEKHIVSTWNPDdkkiqsPSRENTKNSYDTTTSHE 541
                 67788889999999999999....9999999999999998888888887555777777777766644 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 2.6
                 TESSEEEEEESTTEEEEEEEC.TT.SSSST CS
          PH  40 kdkepkgsislsncevvevva.te.dpkrk 67 
                 ++  p +si+ ++++ + v + te  ++++
  CCD22650.1 738 QHGGPNKSIDSTSITTSPVINaTEmFANKE 767
                 667789999999999888776755344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1674  (0.0933683); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 5281.71
//
Query:       CCD22651.1  [L=925]
Description: hypothetical protein NDAI_0A04960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-17   61.7   3.4      5e-08   33.1   0.2    3.0  2  DIL       DIL domain
    1.2e-05   25.8   0.1    2.7e-05   24.7   0.1    1.6  1  Ank_2     Ankyrin repeats (3 copies)
     0.0017   18.6   0.3      0.019   15.3   0.1    2.5  2  Ank_5     Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.011   16.1   0.1      0.011   16.1   0.1    3.2  3  DUF3134   Protein of unknown function (DUF3134)
      0.033   14.8   0.5        1.1    9.9   0.1    2.8  2  Ank_4     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> DIL  DIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.2   1.4e-11     5e-08       1      48 [.     593     642 ..     593     656 .. 0.90
   2 !   28.1   0.3   5.4e-10   1.9e-06      53     103 ..     721     772 ..     707     773 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.4e-11
                 HHHHHHHHHHHHHHHHHHH..HHS-SB-HHHHHHHHHHHHHHHHCCTS-. CS
         DIL   1 QlfsqlfyfinaelfNrll..lrkklcsrskGlqlrrnlslledWaeeqg 48 
                 Q++s  +++ +++lfN++l   rkk++sr++++q+r nls le+W+++++
  CCD22651.1 593 QCLSLAMSWFSTSLFNKILkdRRKKILSRAHAIQIRLNLSALEAWIKNND 642
                 78888899***********888899*********************9865 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 5.4e-10
                 -GGGGHHHHHHHHHHHC-S-..-HHHHHHHC.TT-TSS-HHHHHHHHTTB--T CS
         DIL  53 aekhlapliqaaqllqlpks..sledlesilrstcpaLnsaQlkrllenYrpe 103
                  + hl+p+ +++q+lq+ ++  s+e+l+s+l + +p+L+++Ql ++le+Y++e
  CCD22651.1 721 SQIHLEPVFELLQWLQVATTidSEESLDSTL-KLLPTLSPSQLLKILEKYNYE 772
                 5679****************9999999999*.******************986 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   7.4e-09   2.7e-05      11      80 ..      72     158 ..      61     163 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 7.4e-09
       Ank_2  11 elvklLl.egadpn.k..ngktaLhyAakngnleivklLleh.........ad....ndgrtpLhyAarsghleivklLlekgadin 80 
                 +++k+L+   +d+n k  +g+  +hy +  +    ++lL ++         ++      g+tpL++A   ++ e++  L+++  +in
  CCD22651.1  72 STFKQLVaPLYDINdKslTGMALIHYIIAFNRPSYIELLHDFasnaktpmdLNlkddIMGYTPLMWAFTLQRKECCLELFNYHENIN 158
                 5899999888***97469************99999*****9665666775522544555*********99**********6644554 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.12   4.4e+02       8      46 ..      83     127 ..      83     130 .. 0.80
   2 !   15.3   0.1   5.3e-06     0.019       6      55 ..     120     172 ..     116     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.12
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLl......argadlnltd 46 
                 d+n++   g+  +h+ +  ++++ ++lL+      + ++dlnl+d
  CCD22651.1  83 DINDKSLTGMALIHYIIAFNRPSYIELLHdfasnaKTPMDLNLKD 127
                 678999999889999999***********6666666666666666 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 5.3e-06
       Ank_5   6 padvnrldgg.gntpLhvAakygaadvvrlLl..argadlnltdsrGltaldl 55 
                 p+d+n +d   g+tpL++A   ++ +++++L+   ++ + n+ +++Gl a+dl
  CCD22651.1 120 PMDLNLKDDImGYTPLMWAFTLQRKECCLELFnyHENINFNAVNKDGLQAWDL 172
                 5555555554499*******************888888999**********97 PP

>> DUF3134  Protein of unknown function (DUF3134)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.1   0.1     3e-06     0.011      20      67 ..     175     223 ..     173     225 .. 0.90
   2 ?   -5.3   2.9         5   1.8e+04      42      60 ..     523     541 ..     513     549 .. 0.50
   3 ?   -1.1   0.1       0.7   2.5e+03      16      29 ..     723     736 ..     718     748 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3e-06
     DUF3134  20 qesslLdWLessGRLiardeeeeeele.eeeeeiseLmggddddydddd 67 
                 ++s + d+Le+++ L +r+++++++ + +++++ ++L   ddd +  d+
  CCD22651.1 175 PDSPIHDYLEQNNMLQYRETKKSDKAAiNDNNDANNLSTFDDDPFAVDN 223
                 677888******************9999*************99998775 PP

  == domain 2  score: -5.3 bits;  conditional E-value: 5
     DUF3134  42 eeeleeeeeeiseLmggdd 60 
                 ++++++++++ + + ++dd
  CCD22651.1 523 NDNSDNNKNDQDTINDDDD 541
                 3334344444444444444 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.7
     DUF3134  16 iplkqesslLdWLe 29 
                 i+l++   lL WL+
  CCD22651.1 723 IHLEPVFELLQWLQ 736
                 78888999*****8 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00032       1.1       2      42 ..      92     138 ..      91     146 .. 0.83
   2 ?    7.2   0.0    0.0022       7.9       2      38 ..     132     169 ..     131     170 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00032
       Ank_4   2 ltaLhyaaisgrlelvrlLl......ekgadinaqdnrsGetalhiA 42 
                 + ++hy ++++r  +++lL+       + +d+n  d++ G t+l  A
  CCD22651.1  92 MALIHYIIAFNRPSYIELLHdfasnaKTPMDLNLKDDIMGYTPLMWA 138
                 779*****************66654223478****9999*****988 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0022
       Ank_4   2 ltaLhyaaisgrlelvrlLlek..gadinaqdnrsGeta 38 
                 +t+L +a+  +r e++  L+++  +++ na+ n++G+ a
  CCD22651.1 132 YTPLMWAFTLQRKECCLELFNYheNINFNAV-NKDGLQA 169
                 799*****************76478******.***9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (925 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1486  (0.0828825); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 5940.52
//
Query:       CCD22652.1  [L=468]
Description: hypothetical protein NDAI_0A04970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-47  160.6  41.5    6.8e-47  160.1  41.5    1.2  1  SHE3             SWI5-dependent HO expression protein 3
    0.00073   17.9  19.5      0.001   17.4  19.5    1.3  1  FPP              Filament-like plant protein, long coiled-coi
     0.0014   18.8   8.1     0.0014   18.8   8.1    3.9  3  BLOC1_2          Biogenesis of lysosome-related organelles co
  ------ inclusion threshold ------
      0.015   14.5  26.7        0.3   10.2   4.0    2.4  2  Taxilin          Myosin-like coiled-coil protein
      0.045   11.3  23.2      0.059   10.9  23.2    1.1  1  DUF3584          Protein of unknown function (DUF3584)
      0.079   13.3  24.7       0.23   11.8  10.3    2.7  2  OmpH             Outer membrane protein (OmpH-like)
      0.082   13.2  16.7       0.15   12.4   5.6    3.4  3  ABC_tran_CTD     ABC transporter C-terminal domain
      0.083   12.9  24.3       0.03   14.3   7.3    3.4  3  Laminin_II       Laminin Domain II
       0.15   11.4  16.0       0.23   10.8   2.7    2.3  2  DUF4407          Domain of unknown function (DUF4407)
       0.16   12.4   4.6        2.6    8.4   0.2    2.5  2  HrpB7            Bacterial type III secretion protein (HrpB7)
       0.21   11.4  20.7      0.056   13.3  13.8    2.5  2  PIN_8            PIN like domain
       0.21   11.8  25.2       0.44   10.8   4.3    3.4  3  FliJ             Flagellar FliJ protein
       0.25   11.7  27.2        0.2   12.0  11.5    4.2  3  Tup_N            Tup N-terminal
       0.26   11.4   9.7        2.5    8.2   1.6    2.5  2  Cob_adeno_trans  Cobalamin adenosyltransferase
       0.32   11.3   8.0       0.48   10.8   3.1    3.0  3  DUF2935          Domain of unknown function (DUF2935)
       0.44   10.3  17.6        0.9    9.4   6.9    2.9  2  SKA2             Spindle and kinetochore-associated protein 2
       0.48   10.5  19.9       0.97    9.5   6.6    2.5  2  DUF1664          Protein of unknown function (DUF1664)
       0.49    9.2  31.3      0.074   11.9  16.6    2.4  2  Spc7             Spc7 kinetochore protein
       0.54   10.6   7.5       0.22   11.9   2.2    2.5  2  TEX12            Testis-expressed 12
       0.57   10.7  29.9      0.099   13.2  17.1    2.7  2  APG6_N           Apg6 coiled-coil region
       0.67   10.4  14.4       0.14   12.6   4.3    2.3  2  T3SSipB          Type III cell invasion protein SipB
        1.1    9.4  28.9      0.029   14.5  13.3    3.2  2  BRE1             BRE1 E3 ubiquitin ligase
        1.2    8.2  23.5        1.7    7.8   7.9    2.4  2  Tho2             Transcription factor/nuclear export subunit 
        1.8    8.9   6.5       0.62   10.4   0.9    2.5  2  DUF349           Domain of Unknown Function (DUF349)
        1.8    7.8  27.9       0.23   10.7   6.4    3.2  3  DUF3450          Protein of unknown function (DUF3450)
        1.9    8.3  30.9         25    4.6  29.9    2.2  1  KASH_CCD         Coiled-coil region of CCDC155 or KASH
        2.1    8.8  23.4       0.18   12.2   9.7    3.1  2  DUF4200          Domain of unknown function (DUF4200)
        2.5    8.4  10.8        7.3    6.9   2.2    2.5  2  DUF4164          Domain of unknown function (DUF4164)
        2.5    6.6  27.3       0.17   10.4  10.2    2.5  2  FapA             Flagellar Assembly Protein A
          3    8.0  29.5          6    7.1   3.8    2.7  2  Jnk-SapK_ap_N    JNK_SAPK-associated protein-1
        3.5    6.8  14.4        1.1    8.4   5.4    2.2  2  ISG65-75         Invariant surface glycoprotein
        5.9    7.1  23.6        6.8    6.9   7.2    3.6  3  JIP_LZII         JNK-interacting protein  leucine zipper II
        6.1    6.6  19.3       0.47   10.3  10.4    2.3  2  DUF724           Protein of unknown function (DUF724)
        6.8    6.6  18.0        2.5    8.1   6.2    2.7  2  DUF489           Protein of unknown function (DUF489)
        8.6    6.7  13.8       0.63   10.3   2.8    4.0  3  WXG100           Proteins of 100 residues with WXG
        8.8    6.9  23.3      4e+02    1.6   1.7    4.2  2  NPV_P10          Nucleopolyhedrovirus P10 protein
        9.2    6.7  26.7        4.8    7.6   0.8    3.7  1  CENP-H           Centromere protein H (CENP-H)


Domain annotation for each model (and alignments):
>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1  41.5   1.4e-49   6.8e-47       1     224 [.     130     357 ..     130     361 .. 0.93

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 1.4e-49
                 XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        SHE3   1 StkVIesLHeqiDaLtktnlqLtqqsqeLleklelaqkkeskflenlaslkhENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlens 99 
                 St++Ie+LH+++D Ltktn+qLt qsq+Ll kle+ q++  k+ e+l+ lkhE dnL+s+++RK+r+l d+e+el++l++++e++++e++  + + ++ 
  CCD22652.1 130 STRIIETLHDKVDDLTKTNIQLTLQSQNLLGKLENYQSRSTKLNESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDF 228
                 9************************************************************************************************** PP

                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSXXXXXXXXXXX.XXXXXXXXXXX....XXXXXXXXXXXXXXXXXX CS
        SHE3 100 saseteleeelerlkvqYdalvdsqkeYkehYqqeieeLkesleklklenekqleelqerissndkdidtkldsynn....kkknlesieeeknkkllk 194
                  + e++l+ e+e+l+ qYd+l++sq +Yk+hY+ e++++  ++++lk  +++ql++  ++ s++ +++   +++ ++        ++ + ++  k+l++
  CCD22652.1 229 DQVEKNLQSEIENLQTQYDSLLQSQIHYKDHYSMELNSIISQINELKSKRKEQLQNQLNKESNKLQQLHDIINKITSiesgHSMGVDAMTKQTYKNLQQ 327
                 **************************************************999999888887777666666666653221134457999********** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SHE3 195 kleslaseldleswlelykelkelileyae 224
                 +++ ++++l l+sw+  y+++k+  l +++
  CCD22652.1 328 QYTDAIAKLSLNSWVLIYQQSKNSLLHFNN 357
                 ************************999875 PP

>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4  19.5   2.1e-06     0.001     686     835 ..     134     299 ..      93     351 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.1e-06
         FPP 686 k.................keenkllkeeleelksekenlevelksatenleslkaqlqesEqllaelkseLeslkeskslaetqlkcmkesyesletra 767
                                   + ++++l  +le+ +s+ ++l+ +l+  +++ ++l + ++ + ++l++++ eLe+l++  +++ t+ ++ +  y + ++ +
  CCD22652.1 134 IetlhdkvddltktniqlTLQSQNLLGKLENYQSRSTKLNESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDFDQVE 232
                 1233344445555556656677889999*********************************************************************** PP

         FPP 768 teleaelnelkqkiea.LeveLeeekksheeleakckelqeqlervekkevskssaeeedkklkqekei 835
                 ++l++e+++l+++ ++ L+++++ + ++  el++ + +++e l++++ ke  +++ ++e +kl+q  +i
  CCD22652.1 233 KNLQSEIENLQTQYDSlLQSQIHYKDHYSMELNSIISQINE-LKSKR-KEQLQNQLNKESNKLQQLHDI 299
                 ***********999873588999999999999988888875.77776.455568888899999988777 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   6.5     0.047        23       3      79 ..     137     209 ..     135     210 .. 0.88
   2 !   18.8   8.1     3e-06    0.0014      11      62 ..     200     251 ..     198     277 .. 0.81
   3 ?    2.4   4.5      0.41     2e+02      49      78 ..     278     307 ..     258     320 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.047
     BLOC1_2   3 mfekvskyleaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLee 79 
                 +++kv ++ + +++ t +  +lL kl +  +++ +kl+++++ l+ + ++l +    ++ + +++++ie+++++L++
  CCD22652.1 137 LHDKVDDLTKTNIQLTLQSQNLLGKLENY-QSRSTKLNESLSVLKHEHDNLTS---MINRKQRKLNDIENELEKLQQ 209
                 56799999999**************9665.56789999999999999999999...89999999*********9987 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 3e-06
     BLOC1_2  11 leaeleatvedyklLeklNeaasekykklkdvaaslekkleklnekyeelqp 62 
                 +e+ele  +++y+ +++ N ++s+ky++ ++v ++l++++e+l+ +y++l +
  CCD22652.1 200 IENELEKLQQNYEKIHTENDSSSSKYDDFDQVEKNLQSEIENLQTQYDSLLQ 251
                 799*********************************************8754 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.41
     BLOC1_2  49 kleklnekyeelqpylqqidqiekqvteLe 78 
                   e+l+++ ++ +++lqq+ +i +++t++e
  CCD22652.1 278 RKEQLQNQLNKESNKLQQLHDIINKITSIE 307
                 223444444445555555555555665555 PP

>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  14.9     0.001      0.49     195     308 .]     132     245 ..     123     245 .. 0.95
   2 ?   10.2   4.0   0.00062       0.3     198     255 ..     265     323 ..     247     330 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.001
     Taxilin 195 keakeltkkvkalketekelkeqlnlYaeKfeefqdtLakSnelFatFkkEmekmtkktkklEketnlwkskfektnkallemaeertekkkeieklkk 293
                 + +++l++kv++l++t+ +l  q +    K e  q+  +k ne  +  k E +++t+ + +  ++ n + +  ek +++  ++ +e+  + ++++++++
  CCD22652.1 132 RIIETLHDKVDDLTKTNIQLTLQSQNLLGKLENYQSRSTKLNESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDFDQ 230
                 5577899******************************************************************************************** PP

     Taxilin 294 kiqkLeklcraLqee 308
                   ++L++ ++ Lq++
  CCD22652.1 231 VEKNLQSEIENLQTQ 245
                 *************87 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00062
     Taxilin 198 keltkkvkalk.etekelkeqlnlYaeKfeefqdtLakSnelFatFkkEmekmtkktkk 255
                 +    ++++lk +++++l++qln  ++K ++++d+++k  ++ +     ++ mtk+t k
  CCD22652.1 265 NSIISQINELKsKRKEQLQNQLNKESNKLQQLHDIINKITSIESGHSMGVDAMTKQTYK 323
                 55556777776145678**************************************9976 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  23.2   0.00012     0.059     263     452 ..     143     335 ..     126     364 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
     DUF3584 263 rLsllkgelkadeerlaekqeevqeakaelkqqlrtledelkeaidelnqelsaakaklaakeselealeeqkkk.yedadieklk.adldqlp.sirs 358
                  L  ++ +l  + ++l  k+e+ q ++ +l+++l    + lk + d+l++ ++ ++ kl+ +e+ele+l+++++k + ++d ++ k  d dq++ +++s
  CCD22652.1 143 DLTKTNIQLTLQSQNLLGKLENYQSRSTKLNESL----SVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKiHTENDSSSSKyDDFDQVEkNLQS 237
                 3444444444444444444444444444444444....4567788999999********************997636666666555257888762699* PP

     DUF3584 359 eleeleeeldaltekhqdvqekydrrkqkikeeleeeleklkerleai..reekdrl.kaaieealealesqlrkqleaq.keelneeekelesrlse 452
                 e+e+l+ ++d l++++   +  y  +   i ++ +e  +k+ke+l+++  +e+++ + +++i ++   +es      +a  k+  ++ +++++ ++++
  CCD22652.1 238 EIENLQTQYDSLLQSQIHYKDHYSMELNSIISQINELKSKRKEQLQNQlnKESNKLQqLHDIINKITSIESGHSMGVDAMtKQTYKNLQQQYTDAIAK 335
                 **************999999999999999999999999999999555411343333347777777777777666555543134445555566665555 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  10.3   0.00048      0.23      16      92 ..     178     251 ..     155     275 .. 0.70
   2 ?    6.3   7.3     0.023        11      22      74 ..     272     334 ..     261     367 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00048
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  16 egkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.ekeekeqelqkkeqelqqkqqqkaqelqkkqqellk 92 
                   k   ++l +++++ q +l++ e+el+klq++++k   ++ ++  k+ ++++ e++lq + ++ +     +   ll+
  CCD22652.1 178 VLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENdSSSSKYDDFDQVEKNLQSEIENLQ----TQYDSLLQ 251
                 5566677888889*********************98888876688888888888888888555444....33333333 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.023
                 HHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHTTTS...........-HHHHHHHHHHHHHHHH CS
        OmpH  22 eqlekkf.kklqaeleakekelqklqeelqkkakkle..........keekeqelqkkeqelqq 74 
                 ++l++k+ ++lq++l+++ ++lq+l + ++k ++  e          +++ ++ lq++ ++  +
  CCD22652.1 272 NELKSKRkEQLQNQLNKESNKLQQLHDIINKITSI-EsghsmgvdamTKQTYKNLQQQYTDAIA 334
                 34555443799****************99854443.3568888877766777777777766555 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1       1.5   7.4e+02      38      61 ..     163     187 ..     132     189 .. 0.64
   2 ?   12.4   5.6    0.0003      0.15       5      60 ..     192     249 ..     188     252 .. 0.77
   3 ?    6.1   0.7     0.027        13       9      54 ..     263     307 ..     256     311 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.5
  ABC_tran_CTD  38 sdp.eklaelsaeleeleaeLeely 61 
                   +++  + ++l++ l  l++e ++l+
    CCD22652.1 163 ENYqSRSTKLNESLSVLKHEHDNLT 187
                   3444567777777777777777765 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.0003
  ABC_tran_CTD   5 keqreleeleaeIeaLEeeiaeleaeladpe.lysdp.eklaelsaeleeleaeLeel 60 
                   ++qr+l  +e+e+e+L++  +++++e  + +  y d+ +  + l+ e+e+l+++ + l
    CCD22652.1 192 RKQRKLNDIENELEKLQQNYEKIHTENDSSSsKYDDFdQVEKNLQSEIENLQTQYDSL 249
                   78**********************9776665034666333456888888888888876 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.027
  ABC_tran_CTD   9 eleeleaeIeaLE.eeiaeleaeladpelysdpeklaelsaeleele 54 
                   el  + ++I++L  +++++l+++l++++  ++ ++l ++ ++++ +e
    CCD22652.1 263 ELNSIISQINELKsKRKEQLQNQLNKES--NKLQQLHDIINKITSIE 307
                   7777888899987256899******997..44466666666666665 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.3       0.6   2.9e+02      47      91 ..     134     182 ..     111     193 .. 0.60
   2 ?   14.3   7.3   6.2e-05      0.03      13      98 ..     191     274 ..     179     277 .. 0.86
   3 ?    6.5   2.7     0.017       8.1      18      76 ..     278     337 ..     275     341 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.6
                 XXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH.......HHHH CS
  Laminin_II  47 vkdankairdArrsvkkLeklapqLldklkelkqleeasss....lsdn 91 
                 ++ +   ++d  +   +L+ + ++Ll kl++ + ++ + +     l+++
  CCD22652.1 134 IETLHDKVDDLTKTNIQLTLQSQNLLGKLENYQSRSTKLNEslsvLKHE 182
                 4444455566666666677777777777777766666644444445555 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 6.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHHHHH CS
  Laminin_II  13 kevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdniseikel 98 
                 +  +++l++++++le++++++++i+++ +    k +d+ ++ +  ++++ +L+ + + Ll+   ++  +   s  l   is+i el
  CCD22652.1 191 NRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDFDQVEKNLQSEIENLQTQYDSLLQS--QIHYKDHYSMELNSIISQINEL 274
                 556899*********************99******************************987..6777776666688888888776 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.017
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX--TTTTTGGGHH CS
  Laminin_II  18 qlaplsqnlentkeklseinrsveetnekvkdankaird.ArrsvkkLeklapqLldklk 76 
                  +++l+++l+++++kl+++++ +++++   +  +++++   ++  k+L+++  + ++kl+
  CCD22652.1 278 RKEQLQNQLNKESNKLQQLHDIINKITSIESGHSMGVDAmTKQTYKNLQQQYTDAIAKLS 337
                 6799************************9998888877515667899*999999999875 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.7   0.00047      0.23     151     243 ..     136     228 ..     127     230 .. 0.76
   2 ?    5.6   6.1     0.018       8.8     108     196 ..     231     333 ..     224     365 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00047
     DUF4407 151 aaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld.....atarlaalraelaeleaerakeraasqaaaaaddGl 243
                 ++++++d+l+++  + +      + ++  Gk ++++++ ++l++    l+  +++l+     ++ +l++ ++el++l+++++k+++++++++++ d++
  CCD22652.1 136 TLHDKVDDLTKTNIQLT-----LQSQNLLGKLENYQSRSTKLNESLSVLKHEHDNLTsminrKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDF 228
                 44444444444444333.....3334689999999999999999888888888888888889999999999999999999999999999999988876 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.018
     DUF4407 108 Idaelaeeqqeeakelkeqlaaa.............ltaelaeleaqia.alqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaql 192
                 +++ l++e ++ ++++++ l+++               ++++el+++++ +lq+++++ +++l++l +  +k ++ ++g     +a   + +k+ ++q+
  CCD22652.1 231 VEKNLQSEIENLQTQYDSLLQSQihykdhysmelnsIISQINELKSKRKeQLQNQLNKESNKLQQLHDIINKITSIESGHSMGVDAMTKQTYKNLQQQY 329
                 334444444444444444444446655553333333333333333333355666666666666666666665555544433333334444444444444 PP

     DUF4407 193 daaq 196
                 ++a 
  CCD22652.1 330 TDAI 333
                 4433 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.2    0.0054       2.6      58     146 ..     140     227 ..     123     236 .. 0.80
   2 ?    4.7   0.5     0.073        36       5      35 ..     267     297 ..     263     308 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0054
       HrpB7  58 rlddlttgsspfsiadylacrayrdvleg...rvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlrraaeraredaad 146
                 ++ddlt       i+  l+++ +++ le+   r++++++ l  ++ + d+ +  +++++rk+   + ++++ ++  e++  + +   ++  d
  CCD22652.1 140 KVDDLTKTN----IQLTLQSQNLLGKLENyqsRSTKLNESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDD 227
                 555555555....7888888888888864333889999999999999999999999999999999999999999999999888877766666 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.073
       HrpB7   5 awrtlverrarreerlraeleaaraalaaae 35 
                 +   + e++ +r+e+l+++l++  ++l+++ 
  CCD22652.1 267 IISQINELKSKRKEQLQNQLNKESNKLQQLH 297
                 5667889*****************9999986 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  13.8   0.00012     0.056      41     141 ..     179     278 ..     152     290 .. 0.70
   2 ?    2.5   4.0      0.23   1.1e+02      49     110 ..     265     336 ..     258     391 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00012
       PIN_8  41 alEfqrnresviskekkayedlekeleklkkaaekkleealkkwakkkaldteelrkelkkqleelkeel.kaeleelkksskadkeedpilkkleell 138
                 ++  + n +s+i++++++++d+e+elekl+++ ek  +e +++++k++ +d  +++k+l++++e+l++++ +  +++++ + + + e ++i ++++el 
  CCD22652.1 179 LKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDFD--QVEKNLQSEIENLQTQYdSLLQSQIHYKDHYSMELNSIISQINELK 275
                 555577999*************************98888888888888888..6666666666666666632223333333333344599999999995 PP

       PIN_8 139 egk 141
                 +++
  CCD22652.1 276 SKR 278
                 433 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.23
       PIN_8  49 esviskekkayedlekeleklkkaaekkleealkkwakkkald..........teelrkelkkqleelkeel 110
                 +s+is+ ++ +++ +++l+++ +++++kl+++ +  +k ++++          t+++ k+l++q++++  +l
  CCD22652.1 265 NSIISQINELKSKRKEQLQNQLNKESNKLQQLHDIINKITSIEsghsmgvdamTKQTYKNLQQQYTDAIAKL 336
                 566666666666666666666666666666666666666666666666666666666666666666666666 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.6      0.53   2.6e+02      21      81 ..     141     196 ..     133     197 .. 0.74
   2 ?    6.8  10.3     0.015       7.3       7      78 ..     190     256 ..     184     281 .. 0.81
   3 ?   10.8   4.3   0.00091      0.44       8      64 ..     280     336 ..     273     340 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.53
        FliJ  21 leeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqvekaree 81 
                 ++ l+++  ++  q ++        +l nyq+   +l+e ++ +k+e ++++  +++++++
  CCD22652.1 141 VDDLTKTNIQLTLQSQNLL-----GKLENYQSRSTKLNESLSVLKHEHDNLTSMINRKQRK 196
                 5555555555556666666.....8899999999999999999999999998888888876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.015
        FliJ   7 Laeaqrelqqaeekleeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqveka 78 
                  ++ qr+l++ e++le+l+q++++ + +  +++     +++  + +  ++l+++i+ ++ + + + +   ++
  CCD22652.1 190 INRKQRKLNDIENELEKLQQNYEKIHTENDSSS-----SKYDDFDQVEKNLQSEIENLQTQYDSLLQSQIHY 256
                 6789*********************99999999.....******************9998877655444333 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00091
        FliJ   8 aeaqrelqqaeekleeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqq 64 
                 ++ q++l+++ +kl++l + +++  +  sg++ g++a   ++y++  ++  +aia++
  CCD22652.1 280 EQLQNQLNKESNKLQQLHDIINKITSIESGHSMGVDAMTKQTYKNLQQQYTDAIAKL 336
                 5799********************999999988*********************986 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.5    0.0036       1.8       1      34 [.     171     204 ..     171     206 .. 0.90
   2 ?   12.0  11.5   0.00042       0.2       4      75 ..     202     273 ..     200     275 .. 0.93
   3 ?   -0.1   5.8       2.5   1.2e+03      12      46 ..     263     298 ..     262     339 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0036
       Tup_N   1 RlnelLdavkqEfdalsqeasslkaqkdeyelki 34 
                 +lne L ++k+E d+l++ ++  + + +++e+ +
  CCD22652.1 171 KLNESLSVLKHEHDNLTSMINRKQRKLNDIENEL 204
                 79****************9999999999999876 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00042
       Tup_N   4 elLdavkqEfdalsqeasslkaqkdeyelkiqsqiqElqqirqtlyeLeeahrkikqqYEeeiarLkaeLes 75 
                 + L+ ++q ++++++e+ s+ ++ d++++  ++  +E+++++ +   L +++ + k++Y  e++ + +++++
  CCD22652.1 202 NELEKLQQNYEKIHTENDSSSSKYDDFDQVEKNLQSEIENLQTQYDSLLQSQIHYKDHYSMELNSIISQINE 273
                 5699*************************8888889****************************99888876 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 2.5
       Tup_N  12 Efdalsqeasslka.qkdeyelkiqsqiqElqqirq 46 
                 E +++ ++++ lk+ +k+ + +++++  + lqq++ 
  CCD22652.1 263 ELNSIISQINELKSkRKEQLQNQLNKESNKLQQLHD 298
                 566777777777774555677777776666666553 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.6    0.0051       2.5      46     104 ..     179     248 ..     145     262 .. 0.55
   2 ?    7.5   1.3    0.0086       4.1      34     122 ..     263     355 ..     260     359 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0051
                      CTTTTHHHHHHHHHHHHHHHHHHHHHHT..........-BTCCG-S--.HHHHHH.HHHHHHHHHHHS-- CS
  Cob_adeno_trans  46 laeeeeelkeaLeeiqneLfdlgaelatp.........ekkkekkkit.eeevee.lekeideleaelpp 104
                      l++e+++l++++++ q++L d+ +el            e++++++k +  ++ve+ l++ei++l+++++ 
       CCD22652.1 179 LKHEHDNLTSMINRKQRKLNDIENELEKLqqnyekihtENDSSSSKYDdFDQVEKnLQSEIENLQTQYDS 248
                      3344667777777777777777777753322222222211222222221222333366667766666554 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0086
                      HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT.......-BTCCG-S--HHHHHHHHHHHHHHHHHS--EESEEES-SSHHHHHHH CS
  Cob_adeno_trans  34 elnsaiglarallaeeeeelkeaLeeiqneLfdlgaelatp......ekkkekkkiteeeveelekeideleaelpplksfilpggspaaaalh 121
                      elns+i  + +l ++ +e+l+++L++  n+L +l   +  +       ++    ++t+++ ++l+++  +  a+l+ l+s++l  ++   + lh
       CCD22652.1 263 ELNSIISQINELKSKRKEQLQNQLNKESNKLQQLHDIIN-KitsiesGHSMGVDAMTKQTYKNLQQQYTDAIAKLS-LNSWVLIYQQSKNSLLH 354
                      899999999988877799999999998877776665553.234467655566667777778888888888888888.89999999998888888 PP

                      H CS
  Cob_adeno_trans 122 v 122
                       
       CCD22652.1 355 F 355
                      5 PP

>> DUF2935  Domain of unknown function (DUF2935)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       1.7   8.1e+02      61      92 ..     134     165 ..      56     183 .. 0.70
   2 ?    1.0   0.6         1     5e+02      30      58 ..     149     177 ..     128     225 .. 0.48
   3 ?   10.8   3.1   0.00098      0.48      24      82 ..     227     293 ..     218     362 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 1.7
     DUF2935  61 sseleeavakLneealkltreliqFkkellek 92 
                  + l+++v +L++  ++lt +  +++ +l++ 
  CCD22652.1 134 IETLHDKVDDLTKTNIQLTLQSQNLLGKLENY 165
                 34455566666666666666655555555544 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 1
     DUF2935  30 kdlikeakefkkeFekllaeavelseglv 58 
                  +l  +++++  ++e++ ++  +l+e l 
  CCD22652.1 149 IQLTLQSQNLLGKLENYQSRSTKLNESLS 177
                 33333334444444444444444444432 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00098
     DUF2935  24 lldpkekdlikeakefkkeFekllaeavelseglv...........rasseleeavakLneealkltrel 82 
                  +d+ ek+l  e ++++ +++ ll++++++++                   + ++ ++L ++  k++++l
  CCD22652.1 227 DFDQVEKNLQSEIENLQTQYDSLLQSQIHYKDHYSmelnsiisqinE---LKSKRKEQLQNQLNKESNKL 293
                 69****************************99987777777774441...33333333333333333333 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   3.0     0.026        13      42     106 ..     157     225 ..     134     229 .. 0.77
   2 ?    9.4   6.9    0.0019       0.9      48     109 ..     233     296 ..     230     301 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.026
        SKA2  42 kLlerlkkvkeelqaLkeqceellaekk...elidkirttlvanrellqqLqasa.elpplseeeqeaa 106
                  Ll +l++ +++ ++L+e +  l  e      +i++ +++l++  + l++Lq++  +++ ++++   ++
  CCD22652.1 157 NLLGKLENYQSRSTKLNESLSVLKHEHDnltSMINRKQRKLNDIENELEKLQQNYeKIHTENDSSSSKY 225
                 588889999999999999999999998833345556677899999999999999877777777666665 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0019
        SKA2  48 kkvkeelqaLkeqceellaekkelidkirttlvanrellqqLqasa..elpplseeeqeaaenl 109
                 k++++e+++L++q + ll+++    d  +  l++  + + +L+ +   +l+ + ++e ++ ++l
  CCD22652.1 233 KNLQSEIENLQTQYDSLLQSQIHYKDHYSMELNSIISQINELKSKRkeQLQNQLNKESNKLQQL 296
                 789****************************************999644444447777777765 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.8     0.014       6.9      47     123 ..     134     210 ..     128     211 .. 0.90
   2 ?    9.5   6.6     0.002      0.97      36     111 ..     232     308 ..     224     320 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.014
     DUF1664  47 skqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerieek 123
                  + l +  ++l++t  +L+ + +++  kl++ +  s++++e ++ ++++ +++ + ++  ++  +++e++le+++++
  CCD22652.1 134 IETLHDKVDDLTKTNIQLTLQSQNLLGKLENYQSRSTKLNESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQN 210
                 5567777789999999*******************************************************999875 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.002
     DUF1664  36 krslsdavesvskqleqvseslaatkrhLssridrvdkkldeqke.iskeikeevtevredlseigedvesvkeave 111
                  ++l++ +e++ +q +++ +s  + k+h s +++++ ++++e k   ++++++++++ +++l+++++ ++++ ++ +
  CCD22652.1 232 EKNLQSEIENLQTQYDSLLQSQIHYKDHYSMELNSIISQINELKSkRKEQLQNQLNKESNKLQQLHDIINKITSIES 308
                 589**************************************9876156799*******************9988755 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  16.6   0.00015     0.074     140     257 ..     133     246 ..     129     253 .. 0.81
   2 ?    6.2  17.8    0.0085       4.1     142     241 ..     205     305 ..     205     357 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
        Spc7 140 LkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekiee 238
                 + e+l++++++l++ + +L+ q ++l   l++++++ ++l+e l  l+ ++++l+s     ++  +++l+++++e+e++++++++  ++ +++++k ++
  CCD22652.1 133 IIETLHDKVDDLTKTNIQLTLQSQNLLGKLENYQSRSTKLNESLSVLKHEHDNLTS----MINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDD 227
                 77888999999999999999999999999999999999999999999997777666....577888888888888888888888888888888888888 PP

        Spc7 239 lkeqkseleeeiaeaervl 257
                  ++  ++l++ei++ +  +
  CCD22652.1 228 FDQVEKNLQSEIENLQTQY 246
                 8888888888888877654 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0085
        Spc7 142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaei.eekkkelaelqeqleeleekieel 239
                 e+l++n+e++ ++++  +++ + +d++ ++l++e ++l+ ++++l + +   ++  + eL+++ ++++elk++  e+++++l++  ++l++l + i+++
  CCD22652.1 205 EKLQQNYEKIHTENDSSSSKYDDFDQVEKNLQSEIENLQTQYDSLLQSQIHYKDHYSMELNSIISQINELKSKRkEQLQNQLNKESNKLQQLHDIINKI 303
                 578899999999999999999999999999999999999999999998888888889999999999999887761456777777777777777777776 PP

        Spc7 240 ke 241
                 ++
  CCD22652.1 304 TS 305
                 65 PP

>> TEX12  Testis-expressed 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.2   0.00045      0.22      28      85 ..     194     251 ..     170     257 .. 0.84
   2 ?    0.9   0.3       1.2   5.8e+02      26      57 ..     278     308 ..     255     336 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00045
       TEX12  28 ekvlndmskeinlllskyakilseraavdasyieeidalfkea.stlenllkqkrellr 85 
                 +++lnd+  e++ l  +y ki +e  +  +   +++d + k+  s +enl  q   ll+
  CCD22652.1 194 QRKLNDIENELEKLQQNYEKIHTENDSSSSK-YDDFDQVEKNLqSEIENLQTQYDSLLQ 251
                 678*********************9887655.599******95278****999877775 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 1.2
       TEX12  26 vlekvlndmskeinlllskyakilseraavda 57 
                   e+  n++ ke n l  +   i+ + +++++
  CCD22652.1 278 RKEQLQNQLNKESNKL-QQLHDIINKITSIES 308
                 2233334444444432.233334444444444 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2  17.1    0.0002     0.099      30     130 ..     157     250 ..     116     253 .. 0.81
   2 ?    0.9  13.5       1.3   6.2e+02      22      96 ..     222     298 ..     217     336 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.0002
      APG6_N  30 eflkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyeh 128
                 + l kl+++       ++   +l+e+l+ l+ e ++l + +++ +++  ++e+el++l++  e+++ e++   ++y +++   ++l+ e + l++qy+ 
  CCD22652.1 157 NLLGKLENY-------QSRSTKLNESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDFDQVEKNLQSEIENLQTQYDS 248
                 233333333.......45678999*************************************************************************97 PP

      APG6_N 129 aq 130
                  +
  CCD22652.1 249 LL 250
                 65 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 1.3
      APG6_N  22 ekerdaYeeflkklkkekkeeek.qdeeleeleeeleklekeeeelleeLkeleke.reeleaelaaleeelealee 96 
                  ++ d++ + +k+l++e ++ ++  d+ l++  +  +  + e ++ +++++el+++ +e+l+++l++ +++l++l++
  CCD22652.1 222 SSKYDDFDQVEKNLQSEIENLQTqYDSLLQSQIHYKDHYSMELNSIISQINELKSKrKEQLQNQLNKESNKLQQLHD 298
                 55667777777777777655544445555555555677778888888888887754156788888888888777765 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.3   0.00029      0.14      17      93 ..     173     249 ..     157     258 .. 0.94
   2 ?    4.3   5.0      0.11        52      22     113 ..     238     332 ..     237     340 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00029
                 HHCHHHHHHHHHHHHHHHHHTTTTT----STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT- CS
     T3SSipB  17 nkSLsqLenrlaawkamskaqqeaasklSdelqtalseakgatddleaaiekadqaksaadaatkkvdeaqkrlkeL 93 
                 n SLs L+   +   +m++ +q ++  + +el+++ ++ +++  + + +  k+d+ +++ ++++  +++ q++ ++L
  CCD22652.1 173 NESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDFDQVEKNLQSEIENLQTQYDSL 249
                 78**********************************************************************99999 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHTTTTT----STHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHH..HHTT---------CHHHHHHHHH.. CS
     T3SSipB  22 qLenrlaawkamskaqqeaasklSdelqtalseakgatddleaa.iekadqaksaadaatkkvdeaqk..rlkeLaPdePekakleaaeqQagaa 113
                 ++en  + + +  ++q + + + S el+  +s+ ++++ + +++ ++++++   + ++++  ++++    + +++  d   k+  ++ +qQ ++a
  CCD22652.1 238 EIENLQTQYDSLLQSQIHYKDHYSMELNSIISQINELKSKRKEQlQNQLNKESNKLQQLHDIINKITSieSGHSMGVDAMTKQTYKNLQQQYTDA 332
                 5677788999999***********************99877665145566666677777777777655445556666666666666666666644 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5  13.3   5.9e-05     0.029      13      95 .]     163     245 ..     156     245 .. 0.94
   2 ?   -0.1   6.9       2.1     1e+03      62      85 ..     280     303 ..     266     328 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.9e-05
        BRE1  13 eelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefvrklkeleke 95 
                 e+ ++   k+ ++l+ l+ +   l++++++ ++k  +++++ ++l++   k+ + ++ ss++ +++ ++ek++++++++l+ +
  CCD22652.1 163 ENYQSRSTKLNESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDFDQVEKNLQSEIENLQTQ 245
                 5677888899999******************************************************************9875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 2.1
        BRE1  62 kkLnkllsKsselieqLkelekef 85 
                  +L+++l+K+s + +qL+++ +++
  CCD22652.1 280 EQLQNQLNKESNKLQQLHDIINKI 303
                 357777777777777777744433 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.9    0.0036       1.7      15      80 ..     153     218 ..     151     238 .. 0.82
   2 ?    6.1   7.1     0.011       5.4      24      90 ..     257     325 ..     244     358 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0036
        Tho2  15 lslyDiyvpkeqYekeieklkseieelakdrsderaaakkkkkekkrlkeliekLeeEkkeqiehv 80 
                 l+ +++    e+Y++  +kl+++++ l++++++ ++ +++k+++ +++++  ekL++  ++  +++
  CCD22652.1 153 LQSQNLLGKLENYQSRSTKLNESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTEN 218
                 566666677799***************55555559********************99977654443 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.011
        Tho2  24 keqYekeieklkseieelakdrsde.raaakkkkkekkrlkeliekLeeEkkeqiehv.ekvkkrLkee 90 
                 k++Y  e++ + s+i+el+++r+++ +++ +k++++ ++l+++i+k+++ ++ ++  v +++k+  k+ 
  CCD22652.1 257 KDHYSMELNSIISQINELKSKRKEQlQNQLNKESNKLQQLHDIINKITSIESGHSMGVdAMTKQTYKNL 325
                 679***************99999999*******************999855555443303444444433 PP

>> DUF349  Domain of Unknown Function (DUF349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.5       1.4   6.8e+02      52      69 ..     197     214 ..     156     249 .. 0.72
   2 ?   10.4   0.9    0.0013      0.62      11      67 ..     272     330 ..     267     333 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 1.4
      DUF349  52 wksatkrlkelqeeWkei 69 
                 +++  ++l++lq+ +++i
  CCD22652.1 197 LNDIENELEKLQQNYEKI 214
                 344466666666666665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0013
      DUF349  11 dafferrkahfeeqdaereenlekKealieeaealakstt....dwksatkrlkelqeeWk 67 
                 ++ + +rk++ ++q +++ + l++  ++i ++ +++   +    d   + + +k+lq+++ 
  CCD22652.1 272 NELKSKRKEQLQNQLNKESNKLQQLHDIINKITSIESG-HsmgvD-AMTKQTYKNLQQQYT 330
                 78899******************************654.235533.778999******986 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.4   0.00048      0.23      15      91 ..     138     214 ..     126     216 .. 0.88
   2 ?    4.6  15.9     0.035        17      16     110 ..     202     294 ..     201     296 .. 0.75
   3 ?    0.1   6.4      0.83     4e+02      50     106 ..     261     318 ..     251     333 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00048
     DUF3450  15 aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieei 91 
                 ++++d++ k+  + + +++    k ++++  +++l + +  lk e ++l+   ++ +r +++ e+e+++l+++ e+i
  CCD22652.1 138 HDKVDDLTKTNIQLTLQSQNLLGKLENYQSRSTKLNESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKI 214
                 6777888888888888888888899999********************************************99988 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.035
     DUF3450  16 atldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieei.erelvpllekmidrLe 110
                 ++l+++++  ek++++  +s++k+d+ d+  ++l++e+++l+++ +sl   + ++    ++   e++s+  qi+e++   +++l+  l k  ++L+
  CCD22652.1 202 NELEKLQQNYEKIHTENDSSSSKYDDFDQVEKNLQSEIENLQTQYDSLLQSQIHY---KDHYSMELNSIISQINELKSKrKEQLQNQLNKESNKLQ 294
                 6799*****************************************9997555444...44556666666667766654314556666666555555 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.83
     DUF3450  50 laeyralkeeleslev.yneqlerlvasqeqeiasleeqieeieeierelvpllekmi 106
                 + e++++ +++++l+   +eql++++++  +++++l   i++i+ ie++ +   + m 
  CCD22652.1 261 SMELNSIISQINELKSkRKEQLQNQLNKESNKLQQLHDIINKITSIESGHSMGVDAMT 318
                 5667777777777765156799999999999999999999999999877655555554 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  29.9     0.051        25       9     149 ..     140     288 ..     134     307 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.051
    KASH_CCD   9 tvadLqlnNkkLaeenskLkkavetaeetnakLteeieeLkkk...l.kstQqalqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiak 103
                  v+dL   N +L  + + L  ++e+ +  + kL e ++ Lk+    l  +  +   k   +e+Ele l+++ +++  ++ + + +    ++ ++ L+++
  CCD22652.1 140 KVDDLTKTNIQLTLQSQNLLGKLENYQSRSTKLNESLSVLKHEhdnLtSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDFDQVEKNLQSE 238
                 688999999999999999999999999999999999999997622221345566667777889999999999999888888888888888888888888 PP

    KASH_CCD 104 iesLqeenikllae....kdelkkklkeLlkekaeLkkqlheleellaek 149
                 ie+Lq +   ll+     kd+    l+ ++++++eLk++ +e  +   +k
  CCD22652.1 239 IENLQTQYDSLLQSqihyKDHYSMELNSIISQINELKSKRKEQLQNQLNK 288
                 88888877666554111123333333444444444444443322222222 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   9.7   0.00037      0.18      10      95 ..     171     252 ..     166     261 .. 0.88
   2 ?    0.5   9.1       1.6   7.8e+02      56     105 ..     238     288 ..     226     308 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00037
     DUF4200  10 evqealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkse 95 
                 +++e+l++ k e+ +l   +++++++l++ e+ele+  ++++k   end+ +     k+++  +  k+ ++ei++l+++ + l + 
  CCD22652.1 171 KLNESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSS----SKYDDFDQVEKNLQSEIENLQTQYDSLLQS 252
                 7899**********************************************99....578888889999999999999999887544 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.6
     DUF4200  56 endakraralkkaeeerklkkekeaeikklkaeietlkseie.kleeklee 105
                 e+++ +++     +++ + k+++  e++ + ++i++lks+++ +l+++l++
  CCD22652.1 238 EIENLQTQYDSLLQSQIHYKDHYSMELNSIISQINELKSKRKeQLQNQLNK 288
                 566666677777777788888888888888888888886554367777765 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.5     0.015       7.4       4      81 ..     170     244 ..     166     252 .. 0.83
   2 ?    6.9   2.2     0.015       7.3       5      67 ..     227     298 ..     223     307 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.015
     DUF4164   4 keleaaltrLeaaldsLEkavdrrleaerkrdeleaeiealgedrsRLaeeLdqaearaarleevnrEvsrrLkaaie 81 
                 ++l++ l+ L+   d+L++ ++r+   +rk +++e+e+e+l++  +++  e d+++ +     +v + ++++++ + +
  CCD22652.1 170 TKLNESLSVLKHEHDNLTSMINRK---QRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDFDQVEKNLQSEIENLQT 244
                 567888888888889999999887...5667889************************99999999998888877665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.015
     DUF4164   5 eleaaltrLeaaldsLEkavdrrleaerkr.....deleaeiealgedrsR....LaeeLdqaearaarlee 67 
                 + +++ ++L+  +++L +  d  l+++ +       el++ i++++e +s+    L ++L + ++++++l +
  CCD22652.1 227 DFDQVEKNLQSEIENLQTQYDSLLQSQIHYkdhysMELNSIISQINELKSKrkeqLQNQLNKESNKLQQLHD 298
                 567888888888888888888877777666666675666666666666666000155555555555555544 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4  10.2   0.00035      0.17     329     417 ..     180     262 ..     169     270 .. 0.80
   2 ?    3.3   6.9     0.051        25     329     390 ..     270     332 ..     258     359 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
        FapA 329 gldepelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelk.elkeeleskkeeaki 417
                   ++ +l +++++ +++l+++e+elekl+++++k+  ++ ++      +++++   +  ++l++e+e+l+++++  l+++++ k ++ + 
  CCD22652.1 180 KHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSS------SSKYDDFDQVEKNLQSEIENLQTQYDsLLQSQIHYK-DHYSM 262
                 455567888899999*********************955444......69999999999***************8888888877.44444 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.051
        FapA 329 gldepelkekl.keleeeleeleeeleklkkkikklpklka..ekqlesekkeqlkklletkekl 390
                  ++  elk+k+ ++l+++l++  ++l++l + i+k+ +++   +  +++  k+++k+l++++   
  CCD22652.1 270 QIN--ELKSKRkEQLQNQLNKESNKLQQLHDIINKITSIESghSMGVDAMTKQTYKNLQQQYTDA 332
                 444..444444499999999998888888888777777665334556777777777777777544 PP

>> Jnk-SapK_ap_N  JNK_SAPK-associated protein-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.8     0.012         6      86     139 ..     136     189 ..     129     199 .. 0.59
   2 ?    6.8  19.3     0.015         7      41     153 ..     186     302 ..     184     305 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.012
  Jnk-SapK_ap_N  86 qweeerkelqekveqleeenrelelkaknaadqlsrleekeaelkkeysklher 139
                    ++ ++  +l +   ql+ + ++l  k++n++ + ++l+e+ + lk+e+++l++ 
     CCD22652.1 136 TLHDKVDDLTKTNIQLTLQSQNLLGKLENYQSRSTKLNESLSVLKHEHDNLTSM 189
                    444555556666666666666666666666666666666666666666666653 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.015
  Jnk-SapK_ap_N  41 lasrneeeeaeleelreeleqLeteyerekelrkrae...eeleeiedqweeerkelqekveqleeenrele.lkaknaadqlsrleekeaelkke 132
                    l+s  ++++ +l++ ++ele+L+++ye+ + ++  +    +++ ++e+++++e ++lq++  +l + + +++   + +++  +s+++e +++ k++
     CCD22652.1 186 LTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSskyDDFDQVEKNLQSEIENLQTQYDSLLQSQIHYKdHYSMELNSIISQINELKSKRKEQ 281
                    55555677888888888899999888887777666665568999****************999755444444155566777777777777777777 PP

  Jnk-SapK_ap_N 133 ysklheretellkklkelver 153
                     +++ ++e++ l++l + +++
     CCD22652.1 282 LQNQLNKESNKLQQLHDIINK 302
                    888888999999999999987 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.4    0.0023       1.1      56     121 ..     162     227 ..     153     245 .. 0.87
   2 ?    2.7   3.1      0.12        60      64     139 ..     248     320 ..     225     334 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0023
    ISG65-75  56 lketkdklayienakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkarekakk 121
                 l++ + + + +++ ++ +++++++l s++++++ k +  e++ ekl++ +e+ + +n+++++k + 
  CCD22652.1 162 LENYQSRSTKLNESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDD 227
                 6788889999999*********************************************99988665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.12
    ISG65-75  64 ayienakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkarekakkalekaekaskkakeaakk 139
                 + ++++++  d+y+ +l+s++ +    ++l+++ +e+l++++++  +k ++ ++  +k  ++   +s  +   +k+
  CCD22652.1 248 SLLQSQIHYKDHYSMELNSIISQ---INELKSKRKEQLQNQLNKESNKLQQLHDIINKITSIESGHSMGVDAMTKQ 320
                 44677778889999999999999...68888888888999999999999998888888777766666666666665 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   7.2     0.014       6.8       8      70 ..     135     204 ..     131     205 .. 0.70
   2 ?    1.3   1.6      0.83     4e+02      36      67 ..     198     229 ..     195     245 .. 0.61
   3 ?    4.8   6.8     0.064        31       4      63 ..     236     300 ..     233     308 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.014
    JIP_LZII   8 enLikENteLletknaLnvvkddLIarvd.......eLtsereiLreEleslqkakerlesrikelEeel 70 
                 e+L     +L +t + L  + ++L+ +++       +L++  ++L++E ++l+++ +r + +++++E+el
  CCD22652.1 135 ETLHDKVDDLTKTNIQLTLQSQNLLGKLEnyqsrstKLNESLSVLKHEHDNLTSMINRKQRKLNDIENEL 204
                 5555555666677777777777777666622222226777888999999999999999999***999998 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.83
    JIP_LZII  36 deLtsereiLreEleslqkakerlesrikelE 67 
                  ++ +e e L++  e++++++++  s+  +++
  CCD22652.1 198 NDIENELEKLQQNYEKIHTENDSSSSKYDDFD 229
                 55566666666666666666666655555444 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.064
    JIP_LZII   4 gkevenLikENteLlet....knaLnvvkddLIarvdeLtsere.iLreEleslqkakerlesri 63 
                 + e+enL  ++  Ll+     k    +  + +I+++ eL+s r+  L++ l++  + +++l++ i
  CCD22652.1 236 QSEIENLQTQYDSLLQSqihyKDHYSMELNSIISQINELKSKRKeQLQNQLNKESNKLQQLHDII 300
                 679***********99822224456788999********98766599999998888888877654 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.4   0.00097      0.47      67     185 ..     131     250 ..     126     253 .. 0.87
   2 ?    1.4   1.5      0.51   2.5e+02     109     140 ..     277     304 ..     255     342 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00097
      DUF724  67 rseleslkeslaeLekhGFdVka.lqsrlnkLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlk 164
                 + ++e l +++ +L k     +   q+ l kL + +++ tkl e ++ l+++  + +s  ++ + +++++e++  +l+++ + + +++++++++  +  
  CCD22652.1 131 TRIIETLHDKVDDLTKTNIQLTLqSQNLLGKLENYQSRSTKLNESLSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDFD 229
                 556777777777777776666641456679999*************************99999************************************ PP

      DUF724 165 seaekleeeledveqeFeava 185
                 + +++l+ e+e+ ++++++++
  CCD22652.1 230 QVEKNLQSEIENLQTQYDSLL 250
                 ****************99876 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.51
      DUF724 109 eerkklekkieeeesekrkleeeidelekkil 140
                 +++++l++++ +e+++ ++l++    + +ki 
  CCD22652.1 277 KRKEQLQNQLNKESNKLQQLHD----IINKIT 304
                 2222334444444444443333....333333 PP

>> DUF489  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   8.2       1.8   8.7e+02      55     136 ..     172     249 ..     128     271 .. 0.61
   2 ?    8.1   6.2    0.0052       2.5      86     138 ..     281     337 ..     228     347 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.8
                 GHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHTTHHHHTTS-TTSHHHHHHHHHHHHHHTGG CS
      DUF489  55 lklGletlleqlekekkkkdaeltryalsllalerkLsknkealaklgerieqierqlehfdllhenvlanlasiYsdtiSk 136
                 l++     l++l++e+++ +  + r   +l  +e++L+k ++ ++k++++ ++ +++ + fd +++n+ +++ ++ ++  S 
  CCD22652.1 172 LNES----LSVLKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTENDSSSSKYDDFDQVEKNLQSEIENLQTQYDSL 249
                 2222....22333333333345666666666777777777777777777777777777777777777666666555555555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0052
                 HHHHHHHHSTTHHHHHHHHHHTTHHHHT.TS...-TTSHHHHHHHHHHHHHHTGGGS CS
      DUF489  86 alerkLsknkealaklgerieqierqle.hf...dllhenvlanlasiYsdtiSklg 138
                 +l+++L+k+++ l++l++ i++i++  + h    d ++++ ++nl + Y+d i kl+
  CCD22652.1 281 QLQNQLNKESNKLQQLHDIINKITSIESgHSmgvDAMTKQTYKNLQQQYTDAIAKLS 337
                 68999**********99999988887765522359999***************9986 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.8    0.0013      0.63       2      83 ..     179     258 ..     178     261 .. 0.87
   2 ?    2.1   3.7      0.46   2.2e+02      15      40 ..     227     253 ..     223     309 .. 0.63
   3 ?   -0.3   1.9       2.6   1.3e+03      72      76 ..     291     295 ..     263     340 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0013
                 HCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGCGCTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100   2 ikvdpeelrqaaarfqkqaeeledelqrlkaevdalqsgWsGaaadafqaefeewkqaaqklvdaLeeisealkqaanafed 83 
                 +k +++ l+++++r q++ +++e+el++l++ +++++     +++++  + f+++ +++q  +++L++  ++l q+   + d
  CCD22652.1 179 LKHEHDNLTSMINRKQRKLNDIENELEKLQQNYEKIHTE--NDSSSSKYDDFDQVEKNLQSEIENLQTQYDSLLQSQIHYKD 258
                 5778999*****************************663..46777777789999999999999999999999999888876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHHHHHHHHHHHC.GCG CS
      WXG100  15 rfqkqaeeledelqrlkaevdal.qsg 40 
                 +f++ +++l++e+++l+ ++d+l qs+
  CCD22652.1 227 DFDQVEKNLQSEIENLQTQYDSLlQSQ 253
                 688888899999999999999987774 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 2.6
                 HHHHH CS
      WXG100  72 ealkq 76 
                 ++l+q
  CCD22652.1 291 NKLQQ 295
                 22222 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.7      0.83     4e+02      13      58 ..     134     176 ..     131     193 .. 0.58
   2 ?   -0.9  17.0       4.7   2.3e+03      20      64 ..     264     306 ..     163     314 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.83
     NPV_P10  13 ikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkv 58 
                 i+ + dkVd l +   +++ ++++   l  kL++ +   ++l++++
  CCD22652.1 134 IETLHDKVDDLTKTNIQLTLQSQN---LLGKLENYQSRSTKLNESL 176
                 566777777777655555555554...6666666655555555533 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 4.7
     NPV_P10  20 VdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdi 64 
                 ++++ +q+++++++ ++  +l+++L++ s++L++l++ +++I++i
  CCD22652.1 264 LNSIISQINELKSKRKE--QLQNQLNKESNKLQQLHDIINKITSI 306
                 45667788999999998..9***********************99 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.8    0.0099       4.8      20      55 ..     132     168 ..     127     182 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0099
      CENP-H  20 qelrelqeeltevekenlrlkrknrelaaell.elak 55 
                 + +++l++++++++k n++l+ ++++l+ +l+  +++
  CCD22652.1 132 RIIETLHDKVDDLTKTNIQLTLQSQNLLGKLEnYQSR 168
                 56789**************************413322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2995  (0.167048); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                        76  (0.00423894); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 1.21u 0.36s 00:00:01.56 Elapsed: 00:00:00.53
# Mc/sec: 2662.27
//
Query:       CCD22653.1  [L=553]
Description: hypothetical protein NDAI_0A04980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-05   24.5   0.1     0.0077   17.1   0.0    4.1  4  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.3e-07    0.0077       4      38 .]      10      52 ..       8      52 .. 0.86
   2 ?   -1.0   0.0      0.22   3.9e+03      29      37 ..      96     104 ..      86     105 .. 0.76
   3 ?   -1.8   0.0      0.38   6.8e+03      28      36 ..     209     217 ..     178     217 .. 0.66
   4 ?    1.2   0.0     0.044   7.8e+02      20      34 ..     527     541 ..     512     543 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.3e-07
                EEEEESS.SSEEEEE...EETTSSE....EEEEETTSEEEEEE CS
        WD40  4 lrtltGH.ssvtsla...fspdgaw....lasGsdDgtvriWd 38
                ++tl+ H ++vt+la   +++d ++    l+sG+ +g + iWd
  CCD22653.1 10 TYTLRSHtNPVTCLAlipNNRDPSLippnLISGDSKGQLIIWD 52
                6899***999****98887777777888889**66*******9 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.22
                 ETTSEEEEE CS
        WD40  29 sdDgtvriW 37 
                 s+D+++ri+
  CCD22653.1  96 SKDHKLRIY 104
                 88******8 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.38
                 EETTSEEEE CS
        WD40  28 GsdDgtvri 36 
                  + D+tv+i
  CCD22653.1 209 TTNDKTVKI 217
                 235999997 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.044
                 TTSSEEEEEETTSEE CS
        WD40  20 pdgawlasGsdDgtv 34 
                  +++w + G dDg++
  CCD22653.1 527 NNSSWCFIGYDDGSI 541
                 68999889*99**98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3964.60
//
Query:       CCD22654.1  [L=503]
Description: hypothetical protein NDAI_0A04990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-05   23.6   0.0       0.21   11.2   0.0    2.3  2  Ras       Ras family
  ------ inclusion threshold ------
      0.034   14.4   0.0      0.061   13.6   0.0    1.4  1  AAA_28    AAA domain
        0.1   12.8   0.0       0.35   11.1   0.0    1.9  1  Roc       Ras of Complex, Roc, domain of DAPkinase


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   7.1e-05      0.42       2      35 ..       9      42 ..       8      71 .. 0.83
   2 !   11.2   0.0   3.4e-05      0.21      82     161 ..     370     455 ..     353     456 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.1e-05
                EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEE CS
         Ras  2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvd 35
                l ++G s++GKtsl+ r + +  +e + +T   +
  CCD22654.1  9 LAVLGGSSTGKTSLISRLTLNFVHEVHYPTRSQN 42
                789****************999999999997554 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.4e-05
                 TBHHHHHTHHHHHHHHHHHST......TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras  82 tsresfenvkkwveeikrvae......envpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +++e++++++k++++++++        +  pi+++ +         v  e+g++la ++++ f+ +   ++ nv+ ++  ++rei 
  CCD22654.1 370 NKKETLKELRKFTTKLESIEMdpsspdSPPPIIIICTHLNDPMASPVLIEQGKNLATNWNCGFVAVDNMDDVNVDVTLSLIIREII 455
                 67889999999999999887777888767889999998888889*************************************99986 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     1e-05     0.061       2      20 ..       9      27 ..       8      45 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1e-05
      AAA_28  2 ivitGgestGKTtlleaLa 20
                 +++Gg+stGKT+l+++L+
  CCD22654.1  9 LAVLGGSSTGKTSLISRLT 27
                5899*************98 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.8e-05      0.35       2      31 ..       9      38 ..       8      49 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.8e-05
                EEEESSTTSSHHHHHHCHCT-CCC-EEETT CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsekekst 31
                + ++G s++GKtsl++r++ + ++e + +t
  CCD22654.1  9 LAVLGGSSTGKTSLISRLTLNFVHEVHYPT 38
                789***************988777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1291  (0.0720062); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3585.56
//
Query:       CCD22655.1  [L=456]
Description: hypothetical protein NDAI_0A05000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.45   10.3   7.4        3.1    7.6   0.2    2.9  3  RVT_3     Reverse transcriptase-like


Domain annotation for each model (and alignments):
>> RVT_3  Reverse transcriptase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2   0.00017       3.1      65     108 ..      43      85 ..      35      90 .. 0.91
   2 ?    6.6   0.1   0.00037       6.7      71     116 ..     224     269 ..     211     273 .. 0.82
   3 ?   -2.6   0.5      0.25   4.4e+03     100     116 ..     406     422 ..     404     422 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00017
       RVT_3  65 vegDsktvvqllngrekvksselanlldeirkllksfesvsveh 108
                 v gD+ ++ q+l   ++ + +e+ ++++ei+ +l++f++ + ++
  CCD22655.1  43 VLGDKIVLNQQLFHSST-NDKEVIAQCQEILFVLQRFNKLKQSY 85 
                 6799************8.********************988766 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00037
       RVT_3  71 tvvqllngrekvksselanlldeirkllksfesvsvehipReqNrv 116
                 ++++  +++ + ++  l+ ++   ++l ksf++ ++++i Re+N+ 
  CCD22655.1 224 QLFNIYHDKANSCNMTLKDCMFYYLDLEKSFQNLKLKLIIRENNKL 269
                 6667777777777777888888888999****************96 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.25
       RVT_3 100 sfesvsvehipReqNrv 116
                 +f s+ +++ + ++N++
  CCD22655.1 406 KFHSFLFQWQKINNNKC 422
                 89********9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1289  (0.0718947); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3404.64
//
Query:       CCD22656.1  [L=496]
Description: hypothetical protein NDAI_0A05010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.2e-205  681.9   0.0   4.8e-205  681.7   0.0    1.0  1  Glyco_transf_20  Glycosyltransferase family 20
    0.00017   21.2   1.2     0.0028   17.2   0.1    2.8  3  Glycos_transf_1  Glycosyl transferases group 1
  ------ inclusion threshold ------
       0.15   11.7   0.1       0.25   11.0   0.1    1.4  1  Glyco_transf_5   Starch synthase catalytic domain


Domain annotation for each model (and alignments):
>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  681.7   0.0    8e-209  4.8e-205       2     473 ..      23     487 ..      22     488 .. 0.98

  Alignments for each domain:
  == domain 1  score: 681.7 bits;  conditional E-value: 8e-209
                      -EEEEEEE-SECEEE-S.SCG..EEECCGSSHHHHHCCCHHCCC-EEEEEEECCES-CCC..HCCCCHHHCCCCCEEEEEE-HHHHHHHCCCHH CS
  Glyco_transf_20   2 klvvvsnrlplklereseeekeeyelkkssgglvsalkglkeetevvwvgwlgvevdeseeakekvskeleekfsvvpvflsdekveeyyngfs 95 
                      + +vvsnrlp+++++++e+++  y++k+ssgglv+al+glk++ +++w+gw+g+e++++e  +e+v+k+l+ekf+++p+f+sde+++ +yngfs
       CCD22656.1  23 NIIVVSNRLPVTISKNEETGQ--YDYKMSSGGLVTALQGLKKTSTFQWYGWPGLEIPQDE--QEQVKKDLKEKFNAIPIFMSDEIADLHYNGFS 112
                      679*********999985555..*************************************..9******************************* PP

                      HHCHHHHHTT-GG....G----HHHHHHHHHHHHHHHHHHHCC--TT-EEEEESGGGTTHHHHHHHCCTT.....SEEEEEE-S----HHHHTT CS
  Glyco_transf_20  96 ksvLWpllHYklpdsseekefersawdaYvkvnklFAdkiveeikdgdliwvhDYhLmllPellRkkled.....akigfflHiPFPsseifri 184
                      +s+LWpl+HY++     e +f+++aw aY ++n+ FAd+i+++ +d+dl+wvhDYhLmllPe+lR+k++      +k+g+flH+PFPssei+ri
       CCD22656.1 113 NSILWPLFHYHPG----EINFDENAWLAYNEANRTFADEIIKNCHDNDLVWVHDYHLMLLPEMLREKFNAkklknIKLGWFLHTPFPSSEIYRI 202
                      *************....**************************************************99888999******************* PP

                      STTHHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSSEEEECTTEEEEETTEEEEEEE------HHHHHHHCCSCHHHHHHHHHHHHT.TTSEE CS
  Glyco_transf_20 185 LpvreeilegllgadliGFhtedyarhFlsccsrllgleveskrggveykgrkvsvkalpigidverlesalkkesvsekvkelkerfenkkkl 278
                      Lpvr+eil+g+l++dl+GFht+dyarhFls+++r+l++++ ++  gvey+gr v+++a+pigidve++++ lkk++v++++kelk+ f++ +k+
       CCD22656.1 203 LPVRQEILKGVLSCDLLGFHTYDYARHFLSSVQRVLNVNTLPN--GVEYGGRFVNIGAFPIGIDVESFKDGLKKPEVQQRMKELKDTFKG-CKI 293
                      *******************************************..8******************************************88.8** PP

                      EEEEEEC-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEEEEB-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEEES---HHHHHHHHHH CS
  Glyco_transf_20 279 ilgvDrlDyikGvkqkllaferfLeeypelrgkvvlvqiavpsredveeyqelekeveelvgrINgefgtldytPvvylersldfeeliallaa 372
                      i+gvDrlDyikGv+qkl+a+e fL+e+p+++gkvvlvq+avpsr+dveeyq l++ v+elvgrINg+fgt++++P++++++s++f+eli+l+a+
       CCD22656.1 294 IVGVDRLDYIKGVPQKLHAMEVFLNEHPSWIGKVVLVQLAVPSRGDVEEYQYLRSVVNELVGRINGQFGTVEFVPIHFMHKSIPFDELISLYAI 387
                      ********************************************************************************************** PP

                      -SEEEE--SSBSS-CHHHHHHHCSTTT--EEEEETTBGGGGT-TTTSEEE-TT-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHT-HHHHHH CS
  Glyco_transf_20 373 advllvtslRdGmnlvakeyvvcqqekkgvLiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhdvqsWae 466
                      +dv+lvts+RdGmnlv++ey++cq+ kkg+L+LSeF+GaaqsL+ +ai+vNPw+++ev++ai+eaL++++e+++ +++kl+k++sk++++ W e
       CCD22656.1 388 SDVCLVTSTRDGMNLVSYEYIACQEAKKGSLVLSEFTGAAQSLN-GAIIVNPWNTDEVSDAINEALTLPDEKKEANWEKLYKYISKYTSSFWGE 480
                      ********************************************.88*********************************************** PP

                      HHHHHHH CS
  Glyco_transf_20 467 sflselk 473
                      +f++el+
       CCD22656.1 481 NFVHELY 487
                      *****97 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         1   6.1e+03     135     159 ..     131     155 ..     126     157 .. 0.80
   2 ?    1.1   0.0     0.041   2.4e+02      13      48 ..     289     323 ..     278     351 .. 0.84
   3 !   17.2   0.1   4.6e-07    0.0028      76     166 ..     371     464 ..     368     468 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1
                      TSEEEE-TT-HHHHHHHHHHHHHSH CS
  Glycos_transf_1 135 etGllvkpnnaealaeairkllede 159
                      e+ +l  ++   ++a++i+k  +d+
       CCD22656.1 131 ENAWLAYNEANRTFADEIIKNCHDN 155
                      6789999999999999999977776 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.041
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCE CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkqlnpnv 48 
                      ++ kii+ v rl++ Kgv + ++a++ +  + +p +
       CCD22656.1 289 KGCKIIVGVDRLDYIKGVPQKLHAMEVFLNE-HPSW 323
                      67799999****************9988654.6665 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 4.6e-07
                      GEEECCHSSSHHHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEET.TTTHCHHCHTTT..SEEEE-TT.-HHHHHHHHHHHHHSH..HHHH CS
  Glycos_transf_1  76 iflgevsredleellknadifvlpsisEgfGivllEAmaaglpviasn.aggpaevvkdge..tGllvkpn.naealaeairkllede..elre 163
                      ++++ ++ ++l++l+ ++d+ +++s+++g+ +v +E++a+  +    + +  ++e    ++  +G+++ ++ n ++ ++ai+++l+ +  ++ +
       CCD22656.1 371 FMHKSIPFDELISLYAISDVCLVTSTRDGMNLVSYEYIACQEA---KKgSLVLSEFTGAAQslNGAIIVNPwNTDEVSDAINEALTLPdeKKEA 461
                      6778888899******************************974...45444555555555566899999999*************999767777 PP

                      HHH CS
  Glycos_transf_1 164 rlg 166
                      +++
       CCD22656.1 462 NWE 464
                      776 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   4.2e-05      0.25     118     170 ..     144     191 ..      88     228 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.2e-05
  Glyco_transf_5 118 fsraalelleklgwkpdvihahDWhtalvpallkelykerglfkkiktvftiH 170
                     f+  +++ ++      d++ +hD+h +l+p +l+e   + + +k+ik+   +H
      CCD22656.1 144 FADEIIKNCHD----NDLVWVHDYHLMLLPEMLREKF-NAKKLKNIKLGWFLH 191
                     34444444444....8*******************85.467788898876666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3833.71
//
Query:       CCD22657.1  [L=142]
Description: hypothetical protein NDAI_0A05020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-67  224.2   0.5    4.2e-67  224.0   0.5    1.0  1  DIM1         Mitosis protein DIM1
    1.8e-05   24.6   0.1    2.5e-05   24.2   0.1    1.2  1  Thioredoxin  Thioredoxin
  ------ inclusion threshold ------
       0.13   12.3   0.1       0.21   11.6   0.1    1.3  1  DUF3192      Protein of unknown function (DUF3192)


Domain annotation for each model (and alignments):
>> DIM1  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.0   0.5     7e-71   4.2e-67       1     133 []       4     136 ..       4     136 .. 0.99

  Alignments for each domain:
  == domain 1  score: 224.0 bits;  conditional E-value: 7e-71
                 TS-EE-SHHHHHHHHHH-SSSEEEEEEE-TT-HHHHHHHHHHHHHHHHTTTTEEEEEEETTT--TTSCCCTT-SSSEEEEEETTEEEEEE-SSS--SSB CS
        DIM1   1 llpkLetkeevdqailseeerlvviRFGrdedaeClklDelLakiaeklknfaviylvdidevpdfnkmyeledpvtilffyrnkhmkvDfgtgdnnKl 99 
                 +lp+L+++++vdqai++e+erlvviRFG++++++C+ +DelL++iaek+knf++iyl+didevpdfn+myel+dp+t++ffy+nkhm++Dfgtg+nnK+
  CCD22657.1   4 FLPNLHSGWHVDQAIVTENERLVVIRFGHAWNRDCMLMDELLYSIAEKVKNFVAIYLCDIDEVPDFNEMYELTDPMTLMFFYQNKHMMCDFGTGNNNKM 102
                 69************************************************************************************************* PP

                 -S----HHHHHHHHHHHHHHHHHT-SEEE-SS-T CS
        DIM1 100 nfvledkqelidiietiyrgakkgkglvvspidy 133
                 nfv++dkqe+idi+etiyrga+k+kglvvsp+dy
  CCD22657.1 103 NFVIDDKQEMIDILETIYRGARKNKGLVVSPYDY 136
                 ********************************97 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   4.2e-09   2.5e-05      12      86 ..      17      91 ..      12     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 4.2e-09
                 HHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEE CS
  Thioredoxin 12 eevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevk 86
                 + v ++++lv++ F   w   C  +   l ++ae++k+ v ++ +d+de +d  + ye +   tl++f ++k++ 
   CCD22657.1 17 AIVTENERLVVIRFGHAWNRDCMLMDELLYSIAEKVKNFVAIYLCDIDEVPDFNEMYELTDPMTLMFFYQNKHMM 91
                 56778999*****************************************************99**9999988443 PP

>> DUF3192  Protein of unknown function (DUF3192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   3.5e-05      0.21      47      90 ..      67     110 ..      60     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.5e-05
     DUF3192  47 aDfseakkkkdkevqvlfYRTqrkksDgkTTkdEcTpllfknnk 90 
                 +Df+e+++ +d    ++fY  +++  D  T ++     ++++++
  CCD22657.1  67 PDFNEMYELTDPMTLMFFYQNKHMMCDFGTGNNNKMNFVIDDKQ 110
                 9**************************99999988888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1087.45
//
Query:       CCD22658.1  [L=457]
Description: hypothetical protein NDAI_0A05030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-54  183.0   0.0    6.4e-54  182.5   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    5.2e-40  136.2   0.0    1.2e-39  135.1   0.0    1.6  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    3.1e-14   53.1   1.8    3.1e-14   53.1   1.8    2.5  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    0.00044   20.3   0.1      0.011   15.8   0.1    2.4  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
        1.2    9.0   7.2      0.062   13.2   0.9    2.1  3  GTP_EFTU_D4  Elongation factor Tu domain 4


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.5   0.0   1.8e-57   6.4e-54       1     190 [.       5     232 ..       5     236 .. 0.93

  Alignments for each domain:
  == domain 1  score: 182.5 bits;  conditional E-value: 1.8e-57
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH.HHHST............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHH CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgeka.eeerv............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFske 86 
                 k+++n+++ighvD+GK+T+t++L+yk+g i+k++ ++ e+e++            lD+lk+ErergiTi++a +++e  t ky++++iD+PGH+dF+k+
  CCD22658.1   5 KSHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKfEKEAAelgkgsfkyawvLDKLKAERERGITIDIALWKFE--TPKYEVTVIDAPGHRDFIKN 101
                 579*********************************964344478999*****************************..******************** PP

                 HHHHHHT-SEEEEEEETTTB.......STHHHHHHHHHHHHTTTE.EEEEEESCGST...HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEB CS
    GTP_EFTU  87 virglrvlDgavlvvdaveG.......vepqteevlrlalkegvp.iivfiNKmDrl...kaelkeiveevkqklsrkeeklekygekgekevpvvfgS 174
                 +i+g++++D+a+l+++   G          qt+e++ la ++gv+ +iv++NKmD +   +a+++ei +e   ++      ++k+g++ + +vp+v++S
  CCD22658.1 102 MITGTSQADCAILIIAGGVGefeagisKDGQTREHALLAFTLGVRqLIVAVNKMDSVnwsEARFQEICKETA-NF------IKKVGYNPK-TVPFVPIS 192
                 ******************9999999999*******************************************9.88......8******96.******** PP

                 TTTTBTHH........................HHHHHHHH CS
    GTP_EFTU 175 alkgegvk........................tllealve 190
                 +++g+++                         tllea++ 
  CCD22658.1 193 GWNGDNMIepttnapwykgweketksgvvkgkTLLEAIDA 232
                 *****98878888888888888888888888889988876 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.0   3.3e-43   1.2e-39       2     111 ..     332     439 ..     331     440 .. 0.98

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 3.3e-43
                  -EEECCEEEEEEESSS..SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEEEECT CS
  GTP_EFTU_D3   2 ikphtkfeAqvyilekerhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFaiReg 99 
                   k +++f+A v++l++  +++i agY+pvl+++ta++++k+ eLl+k d++++k+ e++p+f+k+Gd++ v+  ++kp+++e + +yp+lGrFa+R++
   CCD22658.1 332 PKGAESFNATVIVLNH--PGQISAGYSPVLDCHTAHIACKFDELLEKNDRRSGKKLEDSPKFLKSGDAALVKFVPSKPMCVEAFADYPPLGRFAVRDM 427
                  57899***********..******************************************************************************** PP

                  TCEEEEEEEEEE CS
  GTP_EFTU_D3 100 grTvaaGvvtei 111
                  ++Tva+Gv++++
   CCD22658.1 428 RQTVAVGVIKSV 439
                  **********98 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.85     3e+03      12      37 ..       3      26 ..       2      47 .. 0.77
   2 !   53.1   1.8   8.7e-18   3.1e-14       1      72 [.     258     323 ..     258     325 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.85
                 EEETTEEEEEEC.TCTTSEEEEEEEEE CS
  GTP_EFTU_D2 12 tlkkGdevrilg.ndtskkeivtriss 37
                 + k   +v+++g +d++k+   t+ + 
   CCD22658.1  3 KAKSHVNVVVIGhVDSGKS---TTTGH 26
                 5566667889999999888...66555 PP

  == domain 2  score: 53.1 bits;  conditional E-value: 8.7e-18
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdt 72 
                  Gtv  grv++G++k+G+ v + +      +   t+++s+e++he++++ v+g+n+G++v+ + +++ i++G++
   CCD22658.1 258 GTVPVGRVETGVIKPGMVVTFAPaG---VT---TEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKE-IRRGNV 323
                  99*******************7744...45...*********************************.****98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.1e-06     0.011       2      83 ..      10     116 ..       9     154 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.1e-06
                 EEEEESTTSSHHHHHHHHH...............T................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt...............g................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgka 69 
                 v+++G+  +GKSt    l+               +                +k +++++ g T+di   ++++ + e++++D pG          +++ 
  CCD22658.1  10 VVVIGHVDSGKSTTTGHLIykcggidkrtiekfeKeaaelgkgsfkyawvlDKLKAERERGITIDIALWKFETPKYEVTVIDAPG-HR-----DFIKNM 102
                 8999999999999999999666666665555555055555566666666556999****************98889*********.22.....224444 PP

                 HHHHHCTSEEEEEE CS
    MMR_HSR1  70 flaleeadlillvv 83 
                 +    +ad ++l++
  CCD22658.1 103 ITGTSQADCAILII 116
                 44444566666666 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.9     1e+04      67      84 ..       9      27 ..       5      32 .. 0.51
   2 ?   13.2   0.9   1.7e-05     0.062      21      82 ..     262     321 ..     257     324 .. 0.84
   3 ?   -2.9   0.1       1.8   6.4e+03      43      61 ..     432     450 ..     428     456 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.9
                 EEEEESS-.TTTS--TT-E CS
  GTP_EFTU_D4 67 aisiegki.vGrqikegdi 84
                  + + g++  G++   g  
   CCD22658.1  9 NVVVIGHVdSGKSTTTGHL 27
                 4444444444554444444 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.7e-05
                  EEEEEEEEEEETT-EEEETTE.EEEEEEEEEETTEEESEEETT-EEEEEEESS-TTTS--TT CS
  GTP_EFTU_D4  21 vGvevlgGvikpgvklikedGrevGeilqiqdkgkkleeakaGqevaisiegkivGrqikeg 82 
                  vG +v +Gvikpg+ +  +      e+++++ ++++le+   G++v+  +++    ++i  g
   CCD22658.1 262 VG-RVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVS-VKEIRRG 321
                  88.9**********99876666889***********************999754.3556555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.8
                  EEEEEEEEEETTEEESEEE CS
  GTP_EFTU_D4  43 evGeilqiqdkgkkleeak 61 
                   vG+i+++ +++k+ ++ k
   CCD22658.1 432 AVGVIKSVVKSDKAGKVTK 450
                  4666666666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 3668.67
//
Query:       CCD22659.1  [L=340]
Description: hypothetical protein NDAI_0A05040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.017   15.2   3.9      0.071   13.2   0.0    2.3  2  MACPF          MAC/Perforin domain
      0.025   15.1   1.5      0.046   14.2   1.5    1.4  1  CCDC74_C       Coiled coil protein 74, C terminal
      0.027   14.7   1.3        5.6    7.3   0.2    2.4  2  WXG100         Proteins of 100 residues with WXG
      0.055   13.7   0.0       0.12   12.6   0.0    1.5  1  DUF948         Bacterial protein of unknown function (DUF948)
      0.058   13.5   5.1       0.04   14.1   2.8    1.8  2  RasGAP_C       RasGAP C-terminus
       0.16   12.3   5.9      0.096   13.0   1.2    2.7  3  ABC_tran_CTD   ABC transporter C-terminal domain
       0.28   10.7   2.9        0.4   10.2   0.4    1.9  2  Exonuc_VII_L   Exonuclease VII, large subunit
       0.89    9.7   8.1         15    5.8   0.1    2.5  2  Fib_alpha      Fibrinogen alpha/beta chain family
          3    7.4   7.2        1.7    8.2   3.5    2.3  3  Fzo_mitofusin  fzo-like conserved region
        3.8    8.3   7.6        9.6    7.0   3.7    2.5  2  Occludin_ELL   Occludin homology domain
        4.7    7.6   6.9        1.9    8.9   1.1    2.6  3  Tup_N          Tup N-terminal


Domain annotation for each model (and alignments):
>> MACPF  MAC/Perforin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   2.1      0.17   2.8e+02      99     149 ..      64     111 ..      49     155 .. 0.59
   2 ?   13.2   0.0   4.4e-05     0.071     132     180 ..     265     312 ..     225     315 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.17
                 HHHHHTT--HHHHHHHHHHHHT......S-SHHHHHHHHHHHHTT-SS-HHHH---E CS
       MACPF  99 eeveklkkkkedclsasagasi......ngkvslkgkkknssetkekksssqesess 149
                  ++ekl++k e+ +s+++++++               +  +se+k kk+++q  +++
  CCD22659.1  64 DTMEKLEQKVES-ISQQSSQELsrlestL--------RGMESEKKGKKQFYQLARDK 111
                 567777777777.8888877774444441........33333333333333322222 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4.4e-05
                 HHHHTT-SS-HHHH---EEEEEESS-GGG----HHHHHHHHHHTTTS-E CS
       MACPF 132 nssetkekksssqesessktlviGGepeseddksktyseWaesvkenpm 180
                  ++e+++k s   ++++++t+ + G++ ++d++++t+++W++++k n++
  CCD22659.1 265 ADTENNSKLSCG-NERNEFTELRSGSDTFDDTPQSTFDKWKQKIKRNID 312
                 455666666666.77888999999999999***************9975 PP

>> CCDC74_C  Coiled coil protein 74, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.5   2.8e-05     0.046      21      77 ..      74     131 ..      64     158 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.8e-05
    CCDC74_C  21 qnanslQaqElqrlKslLeevlnskkatseayllaksyvkdee.daiqlpkvalknls 77 
                   ++++ +qEl+rl s L+++  +kk + + y+la+ ++k++     ++ ++  k + 
  CCD22659.1  74 ESISQQSSQELSRLESTLRGMESEKKGKKQFYQLARDKMKNKGtKESTFVRLQKKLTW 131
                 45667779*******************************9985333336555555444 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2    0.0034       5.6       8      38 ..      65      95 ..      55     106 .. 0.68
   2 ?    5.9   0.1    0.0092        15      44      70 ..     295     321 ..     283     334 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0034
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG CS
      WXG100  8 elrqaaarfqkqaeeledelqrlkaevdalq 38
                 +++  +++ +++++ ++el+rl++++  ++
  CCD22659.1 65 TMEKLEQKVESISQQSSQELSRLESTLRGME 95
                4666666677777777777777777766665 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0092
                 HHCHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  44 aaadafqaefeewkqaaqklvdaLeei 70 
                 + +++f+++ +++k++++k+++aLe+ 
  CCD22659.1 295 TPQSTFDKWKQKIKRNIDKFNEALETW 321
                 557889999999999999999999975 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.5e-05      0.12      25      67 ..      56      98 ..      41     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.5e-05
      DUF948 25 kktldeaaatieelekqvdpilkevedllakvnelledvnekl 67
                 + ld++++t+e+le++v++i++++ + l+  + +l +++++ 
  CCD22659.1 56 DRELDSINDTMEKLEQKVESISQQSSQELSRLESTLRGMESEK 98
                6789******************************999998765 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   2.8   2.5e-05      0.04      49     114 ..      56     118 ..      53     131 .. 0.77
   2 ?   -2.0   0.0       2.2   3.6e+03      77      90 ..     304     317 ..     293     335 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.5e-05
    RasGAP_C  49 keElesleetlktLseknnylesqlesYkayienvleqlkkkkgklpfskqyfkkrelkksgklpk 114
                  +El+s+++t+++L++k + +++q ++  + +e++l  ++++k   + +kq+++  + k ++k +k
  CCD22659.1  56 DRELDSINDTMEKLEQKVESISQQSSQELSRLESTLRGMESEK---KGKKQFYQLARDKMKNKGTK 118
                 58*************************************8887...23455555444455444444 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.2
    RasGAP_C  77 kayienvleqlkkk 90 
                 k+ i++ +++++++
  CCD22659.1 304 KQKIKRNIDKFNEA 317
                 22333222222222 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.2   5.9e-05     0.096       8      34 ..      57      83 ..      54      96 .. 0.91
   2 ?    1.4   0.2      0.25     4e+02       5      25 ..      79      99 ..      77     130 .. 0.78
   3 ?   -0.0   0.1      0.65   1.1e+03      41      64 ..     298     321 ..     277     324 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.9e-05
  ABC_tran_CTD  8 releeleaeIeaLEeeiaeleaeladp 34
                  rel+ + +++e+LE++ +++ ++ +++
    CCD22659.1 57 RELDSINDTMEKLEQKVESISQQSSQE 83
                  9*********************98875 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.25
  ABC_tran_CTD  5 keqreleeleaeIeaLEeeia 25
                  +  +el +le+++  +E e++
    CCD22659.1 79 QSSQELSRLESTLRGMESEKK 99
                  556899999999999998886 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.65
  ABC_tran_CTD  41 eklaelsaeleeleaeLeelyerW 64 
                    ++ ++ +++++  ++ +e++e W
    CCD22659.1 298 STFDKWKQKIKRNIDKFNEALETW 321
                   557777777777777777777777 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.4   0.00024       0.4     147     222 ..      60     130 ..      28     181 .. 0.68
   2 ?    0.7   0.1      0.19   3.1e+02     165     213 ..     276     328 ..     247     337 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
  Exonuc_VII_L 147 eqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerlk 222
                   +++++++++le+++++  ++++q+l++l+s+l+  e+  + k+q ++ ++++++++ +k+     +++ +l+++l+
    CCD22659.1  60 DSINDTMEKLEQKVESISQQSSQELSRLESTLRGMESEKKGKKQFYQLARDKMKNKGTKE-----STFVRLQKKLT 130
                   456777778888888888888888888888887666666666666666666776644333.....22222222222 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.19
  Exonuc_VII_L 165 eekkqrleklasrl...k.speellerkrqrldeleerleralkkqlkkkrer 213
                    ++++++++l+s       +p++ +++ +q++++  +++++al++ +++++++
    CCD22659.1 276 GNERNEFTELRSGSdtfDdTPQSTFDKWKQKIKRNIDKFNEALETWYNRRNND 328
                   45555555554333334336777777777777777777766666555555544 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   3.5    0.0093        15      31      87 ..      60     113 ..      51     130 .. 0.66
   2 ?    5.8   0.1    0.0091        15      24      63 ..     298     337 ..     296     339 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0093
                 CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  31 kdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskele 87 
                  ++++++ekle+++e+is+++++  +  +++   +++++k kk   + ++  +++++
  CCD22659.1  60 DSINDTMEKLEQKVESISQQSSQELSRLESTLRGMESEKKGKK---QFYQLARDKMK 113
                 5788899999999999998877665555555554444444444...45555555544 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0091
                 HCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHH CS
   Fib_alpha  24 dlllkyekdvkkdlekleneleeisnstkeaeelvkeikd 63 
                  +++k ++++k++++k ++ le+  n+ ++ ++++++i++
  CCD22659.1 298 STFDKWKQKIKRNIDKFNEALETWYNRRNNDSTTMTTIRS 337
                 68899**********************9999999999876 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.5    0.0011       1.7      92     145 ..      56     108 ..      46     124 .. 0.81
   2 ?    2.8   0.3     0.048        78      65      91 ..      97     123 ..      95     132 .. 0.80
   3 ?   -1.5   0.0      0.95   1.6e+03     101     121 ..     298     318 ..     282     336 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0011
  Fzo_mitofusin  92 shqvqqelsstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnka 145
                    +  +   ++ t+++l+q+v+  +++ ++e+++le++++ +e+ +k  k++ + a
     CCD22659.1  56 DRELD-SINDTMEKLEQKVESISQQSSQELSRLESTLRGMESEKKGKKQFYQLA 108
                    54443.47889********************************99999886555 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.048
  Fzo_mitofusin  65 EralKrQfveyatekLrlivsltsanc 91 
                    E++ K+Qf + a +k++   +  s+ +
     CCD22659.1  97 EKKGKKQFYQLARDKMKNKGTKESTFV 123
                    8899************98776666655 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.95
  Fzo_mitofusin 101 stfarlcqqvdetekeleeei 121
                    stf++++q+++++ ++++e +
     CCD22659.1 298 STFDKWKQKIKRNIDKFNEAL 318
                    455555555554444444433 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.7    0.0059       9.6      27      80 ..      55     110 ..      54     131 .. 0.71
   2 ?    2.2   0.1      0.18   2.9e+02      35      72 ..     279     317 ..     271     333 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0059
  Occludin_ELL  27 lhaeleevskkfseLerelkelkegsk.eykkieeeilqeykklkk..dpeyqekkk 80 
                   + +el+++++++++Le+++++ +++s+ e +++e+  l+  ++ kk  ++ yq ++ 
    CCD22659.1  55 CDRELDSINDTMEKLEQKVESISQQSSqELSRLEST-LRGMESEKKgkKQFYQLARD 110
                   678999999999999999999999888455555555.55555554432444444444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.18
  Occludin_ELL  35 skkfseLerelkelkegsk.eykkieeeilqeykklkkd 72 
                   +++f+eL++  ++++++ + +++k +++i ++  k+++ 
    CCD22659.1 279 RNEFTELRSGSDTFDDTPQsTFDKWKQKIKRNIDKFNEA 317
                   689999999999999988888899999999888888774 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.1    0.0012       1.9      39      74 ..      57      92 ..      54      95 .. 0.93
   2 ?    0.7   0.2      0.42   6.8e+02      45      73 ..     101     129 ..      97     131 .. 0.90
   3 ?   -2.0   0.0       2.8   4.6e+03      54      73 ..     299     318 ..     279     325 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
       Tup_N 39 qElqqirqtlyeLeeahrkikqqYEeeiarLkaeLe 74
                +El++i  t+  Le++ ++i qq  +e++rL ++L 
  CCD22659.1 57 RELDSINDTMEKLEQKVESISQQSSQELSRLESTLR 92
                69*****************************99985 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.42
       Tup_N  45 rqtlyeLeeahrkikqqYEeeiarLkaeL 73 
                 ++++y+L +   k k + E    rL+++L
  CCD22659.1 101 KKQFYQLARDKMKNKGTKESTFVRLQKKL 129
                 6889***********99999999999988 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.8
       Tup_N  54 ahrkikqqYEeeiarLkaeL 73 
                 ++ k kq+  ++i + ++ L
  CCD22659.1 299 TFDKWKQKIKRNIDKFNEAL 318
                 44455555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1450  (0.0808746); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 2583.46
//
Query:       CCD22660.1  [L=348]
Description: hypothetical protein NDAI_0A05050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-09   37.6  18.1      3e-09   37.0  18.1    1.3  1  Opy2        Opy2 protein
     0.0051   15.6   0.0     0.0074   15.1   0.0    1.2  1  Herpes_gE   Alphaherpesvirus glycoprotein E
  ------ inclusion threshold ------
      0.012   14.5   0.0      0.018   13.9   0.0    1.3  1  Amnionless  Amnionless
      0.021   14.5   3.2      0.026   14.2   0.0    2.2  2  FAM176      FAM176 family
      0.043   14.0   1.9       0.26   11.5   0.0    2.5  2  MAP17       Membrane-associated protein 117 kDa, PDZK1-intera
      0.084   12.9   1.1        1.9    8.5   1.0    2.7  2  DGF-1_C     Dispersed gene family protein 1 of Trypanosoma cr
       0.13   12.2   2.9       0.26   11.2   2.9    1.4  1  Syndecan    Syndecan domain


Domain annotation for each model (and alignments):
>> Opy2  Opy2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0  18.1   1.2e-12     3e-09       1      35 []      17      50 ..      17      50 .. 0.99

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.2e-12
        Opy2  1 CVsCpdsapsCPsCpsgeeCvltaqtCtsCaktyC 35
                CV C   ++sCP+C+++e+Cv+t  tCt+C++tyC
  CCD22660.1 17 CVICT-GNVSCPTCADDEYCVMTLLTCTACPTTYC 50
                ****9.***************************** PP

>> Herpes_gE  Alphaherpesvirus glycoprotein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.9e-06    0.0074     327     415 ..      65     157 ..      36     171 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.9e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX...XXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX CS
   Herpes_gE 327 estkskeiappnngtsraalllaavliaalllvllglsalvcltkrrrr.kkrrv...ksrlsdeaptY.irlpvsdlladvseDseeeedeve 415
                 +st s+      ng+  + + ++ + + al+++l++l  +      r r +kr+    +++ ++++ ++ i  +++d+  d+ +D++  +de+ 
  CCD22660.1  65 NSTVSSGNDSGTNGKVVGGVVGGVIGGVALIVILVLLFLYKRYWEPRWReNKRKTfagEEGTETNYDQFdIDYADDDD-DDDDDDEDDAGDEEV 157
                 5566666677789999**********************9987765444404444435555555555554456666666.333333333333332 PP

>> Amnionless  Amnionless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   7.1e-06     0.018     329     437 ..      60     165 ..      47     177 .. 0.48

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.1e-06
  Amnionless 329 tsgasssdssaag.apgesaglvlgivfglvlllllllillllllrrkgvl.rlpqllkspsrreeveelkakldkgfdnprFdnvesnekpeeesleg 425
                 t+g ++s++s +g  +g+++++v+g+v g++  + l++il+ll+l+++ +  r+++  ++++     ee ++++  +fd    d   ++++ ++e+ +g
  CCD22660.1  60 TNGTTNSTVS-SGnDSGTNGKVVGGVVGGVIGGVALIVILVLLFLYKRYWEpRWRENKRKTF---AGEEGTETNYDQFDIDYADDD-DDDDDDDEDDAG 153
                 3333333333.553344444444444444433456777777888888888668887444443...222222233344544444443.333333334444 PP

  Amnionless 426 esavdnlsvsss 437
                  ++v++  +++s
  CCD22660.1 154 DEEVNKEDAMKS 165
                 444444444444 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0     1e-05     0.026      32      92 ..      92     161 ..      83     180 .. 0.48
   2 ?   -0.9   1.8      0.45   1.2e+03      72      95 ..     302     325 ..     247     345 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1e-05
      FAM176  32 vGLlltLcllvi.riscrkdlerlkkkkkklkeeseka........sededeeeeeeeedsseseaeeel 92 
                 v L++ L+ll + +  ++++++++k+k    +e +e++         +d+d++++++e+d+ ++e+++e 
  CCD22660.1  92 VALIVILVLLFLyKRYWEPRWRENKRKTFAGEEGTETNydqfdidyADDDDDDDDDDEDDAGDEEVNKED 161
                 3345555544431456777777666655544444443356787776344444444444444444433332 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.45
      FAM176  72 edeeeeeeeedsseseaeeelsef 95 
                 e++eee +++d++e+ ++++++++
  CCD22660.1 302 EENEEELDSTDATETPFKKDMHAV 325
                 333333344444444444444333 PP

>> MAP17  Membrane-associated protein 117 kDa, PDZK1-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0    0.0001      0.26      34     106 ..      87     171 ..      84     183 .. 0.61
   2 ?   -0.7   2.3      0.62   1.6e+03      78     120 ..     271     311 ..     250     345 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
       MAP17  34 GliAvvgFLflvfvlllvnrvWcskaraedeeeetfrmeankeedvslskeekke..............eekekkekkaakegrsne 106
                 G+i  v  +++ ++l+l +r W  +  +++++++tf  e+ +e + ++ + +  +              +e+ +ke +++++ +sn+
  CCD22660.1  87 GVIGGVALIVILVLLFLYKRYWEPR--WRENKRKTFAGEEGTETNYDQFDIDYADdddddddddeddagDEEVNKEDAMKSSVHSNN 171
                 78888899999999********877..666676788777776666665555544422233333333333333344444444444444 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.62
       MAP17  78 dvslskeekkeeekekkekkaakegrsnegleleenesedeek 120
                 ++ ++++  +  ++++++ ++a + r ++ + +eene e + +
  CCD22660.1 271 NIMKKDTVDR--KTSNNNLTTAIRARPKLVQIVEENEEELDST 311
                 3333333333..3455556666666666666666666554433 PP

>> DGF-1_C  Dispersed gene family protein 1 of Trypanosoma cruzi C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.0   0.00074       1.9      25      76 ..     149     204 ..     140     209 .. 0.71
   2 ?    2.4   0.0     0.061   1.6e+02      37      70 ..     201     236 ..     188     243 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00074
     DGF-1_C  25 ddeesdeelrklhdvtsssyasgttvassy.rPPappl...qplagdtrsdalsll 76 
                 +d+ +dee++k+  ++ss ++ +    ss   PP  ++   ++ ++ t+s+a +ll
  CCD22660.1 149 EDDAGDEEVNKEDAMKSSVHSNNNMNISSQmIPPTLNIkgnRSSTSTTNSKASNLL 204
                 46679**********99999888877776515776544333555666666666665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.061
     DGF-1_C  37 hdvtsssyasgttvassyrPPapplqp..lagdtrs 70 
                  +    +y  g t a   +PPa   +   + gd rs
  CCD22660.1 201 SNLLPIAYIPGVTSAGITKPPALLNNNlnIVGDKRS 236
                 5556678999************86654114567776 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.9    0.0001      0.26       7      33 ..      79     105 ..      76     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
    Syndecan   7 evlaaviggvvvgllfaillvlflvYR 33 
                 +v+ +v+ggv+ g+ ++++lvl+ +Y+
  CCD22660.1  79 KVVGGVVGGVIGGVALIVILVLLFLYK 105
                 7999********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1318  (0.0735122); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2499.90
//
Query:       CCD22661.1  [L=680]
Description: hypothetical protein NDAI_0A05060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.3e-162  537.8   0.0   2.2e-161  536.4   0.0    1.6  2  Transketolase_N  Transketolase, thiamine diphosphate binding 
    1.1e-47  162.0   0.0    1.8e-47  161.3   0.0    1.4  1  Transket_pyr     Transketolase, pyrimidine binding domain
    7.1e-13   48.5   0.0    2.2e-12   47.0   0.0    1.9  1  Transketolase_C  Transketolase, C-terminal domain
    0.00032   19.7   0.0    0.00057   18.9   0.0    1.3  1  E1_dh            Dehydrogenase E1 component
     0.0013   18.0   0.0     0.0023   17.2   0.0    1.5  1  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  536.4   0.0    6e-165  2.2e-161       1     334 []       7     339 ..       7     339 .. 0.99
   2 ?   -1.8   0.0      0.33   1.2e+03     198     241 ..     485     526 ..     456     528 .. 0.65

  Alignments for each domain:
  == domain 1  score: 536.4 bits;  conditional E-value: 6e-165
                      HHHHHHHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-S CS
  Transketolase_N   1 idkkavnaiRvLavDavekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgsk 94 
                      idk av++iR+LavD v+ka+sGhPGaplg+a++a+v+++++ ++ P++p+wi+RDRfvLsnGha++llY++lhLtGyd+s++dlk+frqlgsk
       CCD22661.1   7 IDKLAVSTIRLLAVDEVAKANSGHPGAPLGMAPAAHVVWSQMNMN-PKNPDWINRDRFVLSNGHAVALLYAMLHLTGYDFSIDDLKQFRQLGSK 99 
                      57899***********************************99887.************************************************ PP

                      S-SS--TTTSTT--S---STTHHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETT CS
  Transketolase_N  95 tpGhPelghtagvevttGPLGqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisid 188
                      tpGhPe ++ +gvevttGPLGqGi+navg+a+a+++laatynkp+f+++d++tyv+lgDgcl+eG+sseasslag+lkLg+Li++yDdn+i+id
       CCD22661.1 100 TPGHPE-FELPGVEVTTGPLGQGITNAVGMAIAQRNLAATYNKPNFTLSDNFTYVFLGDGCLQEGISSEASSLAGHLKLGNLICIYDDNNITID 192
                      ******.789************************************************************************************ PP

                      EEGGGT--S-HHHHHHHTT-EEEEE.TTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHHHHHHTTS-TT- CS
  Transketolase_N 189 GeteisftedvakrfeaygWhviev.edgedveaikaaieeakaekdkPsliklrtviGygspakagtedvhGapLgedevaalkkklGfdpek 281
                      G+te+sf+edvakr+eaygW+v+ v +++ed+e i++a+++ak+++dkP+lik++t+iGygs +++g+++vhG+pL+ +++++l+ k+Gf+p+k
       CCD22661.1 193 GNTEVSFDEDVAKRYEAYGWEVLYVeNGNEDLEGIAKAVAQAKKSTDKPTLIKMTTIIGYGS-QQQGSHAVHGSPLKPEDIKQLRIKFGFNPDK 285
                      *************************8899*********************************.******************************* PP

                      TS---HHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT--- CS
  Transketolase_N 282 sfevpeevydaykekvae.gakaeeeWeekfaaykkkapeeaaelerrlsgelP 334
                      sf+vp+evyd y++k+ + g +a+++W+++f++y++k+pe++ael+rrl+g+lP
       CCD22661.1 286 SFVVPQEVYDFYQTKILNpGVEANKKWNSLFEQYQQKYPELGAELARRLAGKLP 339
                      ****************999*********************************99 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.33
                      -HHHHHHHT.T-EEEEETTTT-HHHHHHHHHHHHH-TTS-EEEEE CS
  Transketolase_N 198 dvakrfeay.gWhvievedgedveaikaaieeakaekdkPslikl 241
                      ++ ++f+a  + hv +  dg+   + +aa + a ++k+ Ps+i+l
       CCD22661.1 485 ETLAHFRALpNTHVWRPADGN---ETSAAYKVAIESKHTPSIIAL 526
                      456667665355666655554...456788888889999999987 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.3   0.0     5e-51   1.8e-47       2     177 ..     355     533 ..     354     534 .. 0.98

  Alignments for each domain:
  == domain 1  score: 161.3 bits;  conditional E-value: 5e-51
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT........TEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHH CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg........egrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqi 90 
                   ++a+rk ++ +l+++ +e pe+++++aD++ ++++ ++g +++q+        +gr+i++gi+E+a+ ++++G+++ g  + +++++F++F++    
    CCD22661.1 355 AVATRKLSEIVLQSIHEELPELIGGSADLTPSNLTRWSGAVDFQPpssklgdySGRYIRYGIREHAMGAIMNGISAYGAHYLPYGGTFLNFVS---- 447
                   589******************************************************************************************.... PP

                   GGHHHHHCHHHHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC. CS
  Transket_pyr  91 yadqairsgeakgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllrh 177
                   ya  a+r ++a+++ +++ v t+++igvgedGp+hq++e++a++r++p+ +v+rP+d +et ++++ ai+++  +P++++l++++l+h
    CCD22661.1 448 YAAGAVR-LSALSGHPIIyVATHDSIGVGEDGPTHQPIETLAHFRALPNTHVWRPADGNETSAAYKVAIESK-HTPSIIALTRQNLPH 533
                   *******.**************************************************************65.79***********96 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0     6e-16   2.2e-12       1     124 []     546     656 ..     546     656 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 6e-16
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTTTTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTTCSS CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLekegisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdglda 94 
                      g++  +  +++++l a+Gs+v++++eAa+ L+++gi+a++v+l+ +  +D++  +       rl v+ ++ +  +++   ++++ +        
       CCD22661.1 546 GYVLQDVANPHIILAATGSEVSTSVEAAKLLASQGINARIVSLPDFLAFDRQSEE------YRLSVLPDGIPVLSVEVLSTSCWGK-------- 625
                      78889999**********************************************9......***********99996655555555........ PP

                      EEEEEEE-SS.SSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  95 pvkrvggpdv.iepgsaeelekafgldaeki 124
                      + ++  g d  + +g+a+e+ k fg+++e +
       CCD22661.1 626 YAHQSFGLDRfGASGKAPEVFKSFGFTPEGV 656
                      9999999999999***************976 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.6e-07   0.00057      95     224 ..     110     248 ..      69     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.6e-07
                 .BEEE-SSTTTHHHHHHHHHHHHH..........HHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--E.EEEEEEESEETT..EEHHHH-S---GGG CS
       E1_dh  95 rilggngivgaqvplvaGialaak..........iegkkevailliGDgAanqGdvyealnlaalwklpv.ifvveNNkygis..Teaekasaskelad 180
                  +  + g++g     + G+a+a++          +   ++ + ++ GDg   +G+  ea  la   kl   i +   N++ i   Te++  + + + ++
  CCD22661.1 110 GVEVTTGPLGQGITNAVGMAIAQRnlaatynkpnFTLSDNFTYVFLGDGCLQEGISSEASSLAGHLKLGNlICIYDDNNITIDgnTEVSFDEDVAKRYE 208
                 455566788888666669999999999999999989999*************************99998758888999999962256666666666677 PP

                 ..TTTTS-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE CS
       E1_dh 181 rargvgipglrVdgnDplavyeAvkfAaeraregkgpllielvt 224
                  a g ++ +++   +D + + +Av  A++   + ++p+li + t
  CCD22661.1 209 -AYGWEVLYVENGNEDLEGIAKAVAQAKK---STDKPTLIKMTT 248
                 .89999999998888***99999988876...556799999876 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.5e-07    0.0023      62     178 ..      61     194 ..       6     248 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.5e-07
  DXP_synthase_N  62 DklvwDvgHqa...YvhKiltgRkdkfktlrqkgGl...sgfpkrsEseyDafeagHsstsisaalGlavardlkge..........kkkvvavi 140
                     D++v   gH     Y+   ltg   ++++l+q   l   +    + E +   +++g  +  i+ a+G+a+a++              ++ +   +
      CCD22661.1  61 DRFVLSNGHAVallYAMLHLTGYDFSIDDLKQFRQLgskTPGHPEFELPGVEVTTGPLGQGITNAVGMAIAQRNLAAtynkpnftlsDNFTYVFL 155
                     56666666653223555556666655555544444410022223344444556778888999*********665544355566666567888889 PP

  DXP_synthase_N 141 GDgaltgGmafealnnigelk.kkllvilNdNemsiskn 178
                     GDg l  G++ ea   +g+lk  +l+ i+ dN+ +i+ n
      CCD22661.1 156 GDGCLQEGISSEASSLAGHLKlGNLICIYDDNNITIDGN 194
                     *******************98469**********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4787.32
//
Query:       CCD22662.1  [L=162]
Description: hypothetical protein NDAI_0A05070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-41  140.4   0.0    5.8e-41  140.2   0.0    1.0  1  LMWPc     Low molecular weight phosphotyrosine protein phosph


Domain annotation for each model (and alignments):
>> LMWPc  Low molecular weight phosphotyrosine protein phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   0.0   3.2e-45   5.8e-41       1     142 []       9     158 ..       9     158 .. 0.97

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 3.2e-45
                 EEEEESSSSSHHHHHHHHHHHHHHHTT-CCCE.EEEEEESTST.TT-B--HHHHHHHHHTTS--TT-BB-BS-HHHHHHSSEEEESSHHHHHHHHHHCC CS
       LMWPc   1 vlfvClgNicRSpmAealfrkelekagleekv.evdSaGtgal.vgkradpravevlkekgislsghvarqlskeelaelDlilamdeenkreleslap 97 
                 v+fvClgNicRSpmAea+f +++++a le+k+ +++S+Gt  + +g+++d r+ ++++++g++++ h+a+q++  +++++ +i++mde+n ++l++++p
  CCD22662.1   9 VAFVCLGNICRSPMAEAVFSHIVKQAHLEDKFeKIESFGTARYhIGEEPDSRSSATCRKHGVPVN-HRAQQIKSGHFKKFNYIICMDESNFQDLQRIKP 106
                 79******************************99*******************************.********************************* PP

                 T...TGGGGEEEGGGG....SSTSS---HTTSSHHHHHHHHHHHHHHHHHHH CS
       LMWPc  98 e...kekakvkllgey....teqldieDPyygeieafeevldeieeavkkll 142
                 +   ke + + l+g++    + +++++DPyyg+ ++fe  ++++  +++++l
  CCD22662.1 107 KdspKEFGNIYLFGHWntngKFNKIVDDPYYGGVDGFEYNFKQVSYFSEEFL 158
                 *9888899********99988899***********************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1251.68
//
Query:       CCD22663.1  [L=575]
Description: hypothetical protein NDAI_0A05080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-65  219.3  42.4    6.6e-64  215.5  31.0    3.4  2  Not3            Not1 N-terminal domain, CCR4-Not complex comp
    2.3e-38  131.2   7.0    2.3e-38  131.2   7.0    2.6  2  NOT2_3_5        NOT2 / NOT3 / NOT5 family
  ------ inclusion threshold ------
      0.039   14.2   4.9       0.06   13.6   1.0    3.1  3  Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_
       0.94    9.0   8.2       0.82    9.2   1.8    2.4  2  MCD             Malonyl-CoA decarboxylase C-terminal domain
          4    7.3  22.7       0.57   10.0   1.1    3.6  3  PCRF            PCRF domain


Domain annotation for each model (and alignments):
>> Not3  Not1 N-terminal domain, CCR4-Not complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.5  31.0   1.8e-67   6.6e-64       1     230 [.       2     212 ..       2     213 .. 0.95
   2 ?    1.6   3.5     0.043   1.5e+02     144     213 ..     284     357 ..     274     372 .. 0.48

  Alignments for each domain:
  == domain 1  score: 215.5 bits;  conditional E-value: 1.8e-67
        Not3   1 akrklqqeidktlkkvaegveeFdeiyeklesa..enqsqkeKleadLKkeikKLqrlRdqiktwlssneikdk.kkLlenrkliEeamerFkavEkes 96 
                 ++rklqq+idk+lkkv eg+e+F+ iyek++s+  +n+s +eKleadLK+eikKLq++R+qiktwls++++kdk + L+enr+liE+ merFkavEk +
  CCD22663.1   2 SQRKLQQDIDKLLKKVREGLEDFEIIYEKFQSTepSNSSYREKLEADLKREIKKLQKHREQIKTWLSKDDVKDKtSILMENRRLIENGMERFKAVEKLM 100
                 58******************************977899************************************5589********************* PP

        Not3  97 KtKafSkeglakaaaekldpkekekeearewlkdaideLneqvekleaeieklsskkkkkkkskekarveeleklierhkfhieklelllrlleneele 195
                 KtK+fSke+l++ +   +dpke +k++  ++++++++eL++q+e++ea+ ++                     +++erh+fhi++le++l+l++n+++e
  CCD22663.1 101 KTKQFSKEALTNPDI-ITDPKELKKRDRLNFIEECLEELQKQLESHEAQDDQ---------------------EQVERHEFHISNLENILKLVQNGDME 177
                 ***********7766.55**************************99988543.....................5689********************** PP

        Not3 196 peevekikedieyyvesnqdedfeedeelYddlnl 230
                 pe+v++ +edi+yyve+n+d+df+e +++Y+d+ +
  CCD22663.1 178 PETVDEYEEDIKYYVENNEDPDFVEYDTIYEDMGC 212
                 ********************************976 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.043
        Not3 144 aeieklsskkkkkkkskekarveeleklierhkfhieklelllrllene.....elepeevekikedieyyvesn 213
                 ae +++ +k++k+ k ++k+  +e++k+i+ ++  +e++++  +  + +     +  p++ e+i+e i++ ve+n
  CCD22663.1 284 AESDNTFTKDTKDTK-DTKETSSEVTKTIDANTANVEEMKKTTDTEDIDgrlklKYPPDRTEEIEEIIKHDVENN 357
                 333333333333322.22345666666666666666666665555332211111233455555555555555544 PP

>> NOT2_3_5  NOT2 / NOT3 / NOT5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.1   4.1e+03      81      94 ..      60      73 ..      37      92 .. 0.74
   2 !  131.2   7.0   6.5e-42   2.3e-38       1     130 [.     396     571 ..     396     572 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
    NOT2_3_5 81 hkelktWflreeke 94
                 ++ ktW+ +++ +
  CCD22663.1 60 REQIKTWLSKDDVK 73
                45678999999533 PP

  == domain 2  score: 131.2 bits;  conditional E-value: 6.5e-42
    NOT2_3_5   1 ssllnspdsedaekprqyep..klphptsisypqep........................................lyeklesakklekldedtLFyiF 57 
                 sslln+pds+da++p+ y++  +lphptsi++p+ep                                        +y++++ ak+++k+d+dtLF+iF
  CCD22663.1 396 SSLLNCPDSLDADSPYLYQIplSLPHPTSIFFPNEPirfvypfdintpvenninnndnsanaisdtenlnkkhyedMYSRTSLAKIYTKFDLDTLFFIF 494
                 589****************99****************************************************************************** PP

    NOT2_3_5  58 YysqgtleqllAakeLkk.rsWryhkelktWflreeke.epkekteeyekgsYkyFDye.tWlkrr.kkdfkleyek 130
                 Y++qgt++q+lA++eL+k r+W+y+k + +W+++e ++  p  + ++ e++s++yFDy+ +Wl+rr ++df++++e+
  CCD22663.1 495 YHYQGTYDQFLASRELSKnRDWKYNKVDYCWYYKEIEKlPPGANYNKDEEESWRYFDYKkSWLSRRcGNDFVYKEED 571
                 ****************999****************9886678888999*********999******9******9987 PP

>> Plasmid_RAQPRD  Plasmid protein of unknown function (Plasmid_RAQPRD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.95   3.4e+03      40      40 ..      45      45 ..       7      73 .. 0.55
   2 ?   13.6   1.0   1.7e-05      0.06       5      55 ..     124     174 ..     120     175 .. 0.94
   3 ?   -0.6   0.0      0.45   1.6e+03      11      43 ..     306     339 ..     299     351 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.95
  Plasmid_RAQPRD 40 f 40
                    +
      CCD22663.1 45 L 45
                    1 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.7e-05
  Plasmid_RAQPRD   5 EreeLakllkqLdqlqalveraeaqakqeekaRvhfdYdrlrrDleriraG 55 
                      r++L  + + L++lq+++e  eaq +qe+ +R +f ++ l++ l+ +++G
      CCD22663.1 124 KRDRLNFIEECLEELQKQLESHEAQDDQEQVERHEFHISNLENILKLVQNG 174
                     6999**************************************999999987 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.45
  Plasmid_RAQPRD  11 kllkqLdqlqalveraeaqakqe.ekaRvhfdYd 43 
                     ++ k +d+ +a ve+ +++ ++e    R+++ Y+
      CCD22663.1 306 EVTKTIDANTANVEEMKKTTDTEdIDGRLKLKYP 339
                     6778899999999999999999965679999995 PP

>> MCD  Malonyl-CoA decarboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.8   0.00023      0.82     114     243 ..      49     180 ..      46     185 .. 0.69
   2 ?    2.9   0.6     0.019        69     124     186 ..     258     322 ..     244     339 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00023
                 HHHHHHHHHHH-TT--EEEEEE--TTSHHHHHHHCC...GCC-TT--HHHHCCHGGC............TSSTCTSSCHHHHHHHHHHHHHHHHHHHT- CS
         MCD 114 iKrvveelkrelpklktfatLsPiPgfrkwlkrelk...kesealleeeeaealaeleaeaakllkklleeeewaedeelaeklkevllrlaarYllke 209
                 +Kr +++l++  +++kt+ +   +   ++ l+++++   +  e++ + e+  ++++++ ++a +  + +++++  ++++  + ++e l +l  +   +e
  CCD22663.1  49 LKREIKKLQKHREQIKTWLSKDDVKDKTSILMENRRlieNGMERFKAVEKLMKTKQFS-KEALTNPDIITDPKELKKRDRLNFIEECLEELQKQLESHE 146
                 6899999999999999999999999999999987542212233333333333333333.3333344555566666666678889999999988877777 PP

                 B-TTSBSSCCHHHHHCTT-EEEEEETTS--SHHH CS
         MCD 210 krkkraldpvarFHlgnGArlerlnwladtsekg 243
                  ++++   +  +FH++n  ++ +l  ++d+ +++
  CCD22663.1 147 AQDDQEQVERHEFHISNLENILKLVQNGDMEPET 180
                 777766666678****************998766 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.019
                 H-TT--EEEEEE--TTSHHHHHHHCCGCC-TT--HHHHCCHGGC..............TSSTCTS CS
         MCD 124 elpklktfatLsPiPgfrkwlkrelkkesealleeeeaealael..eaeaakllkklleeeewae 186
                   p+++t ++ sP P  ++  ++++++es+++ ++ ++++ ++   ++e +k++ + +++ e ++
  CCD22663.1 258 PSPTVSTPVSASPSPAPSSLSNKKQTAESDNTFTKDTKDTKDTKetSSEVTKTIDANTANVEEMK 322
                 45788889999999999888888877777776665554433333112233333222222222222 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.7    0.0006       2.2      28     104 ..      11      81 ..       1      89 [. 0.61
   2 ?   10.0   1.1   0.00016      0.57       2      65 ..     132     201 ..     131     237 .. 0.83
   3 ?    0.4   3.2      0.14   4.9e+02      12      57 ..     285     330 ..     275     395 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0006
                 THHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTSEEEEE CS
        PCRF  28 skelaeleeivealeeleealedleeakelleedeelaelaeeeleelekeleeleeelkklLlpkdendeknaile 104
                  k l++++e +e++e + e+ ++ e       ++++ +e  e++l++  k+l++ +e++k++L+ +d +d+ ++++e
  CCD22663.1  11 DKLLKKVREGLEDFEIIYEKFQSTEP------SNSSYREKLEADLKREIKKLQKHREQIKTWLSKDDVKDKTSILME 81 
                 22233333333333333333333333......445566666777777778888888888*****9999999999998 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00016
                 HHHHTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT..........-S- CS
        PCRF   2 eeeleelekklsdpevwedqekakklskelaeleeivealeeleealedleeakelle......edeela 65 
                 ee leel+k+l+++e ++dqe++++   ++++le+i++ +++ + + e+++e +e ++      ed+++ 
  CCD22663.1 132 EECLEELQKQLESHEAQDDQEQVERHEFHISNLENILKLVQNGDMEPETVDEYEEDIKyyvennEDPDFV 201
                 67789************************************99999999888777663333345666665 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.14
                 T.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...H CS
        PCRF  12 lsdpevwedqekakklskelaeleeivealeeleealedleeakel 57 
                  sd+++++d+++ k+++++ +e++++++a ++  e++++ ++++++
  CCD22663.1 285 ESDNTFTKDTKDTKDTKETSSEVTKTIDANTANVEEMKKTTDTEDI 330
                 3444455555555554444444444444433333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2361  (0.131686); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.41
# Mc/sec: 4169.35
//
Query:       CCD22664.1  [L=177]
Description: hypothetical protein NDAI_0A05090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1374.06
//
Query:       CCD22665.1  [L=1007]
Description: hypothetical protein NDAI_0A05100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.4e-48  158.2  21.4    2.5e-07   30.2   0.0   10.9 10  TPR_1          Tetratricopeptide repeat
      1e-40  134.5  28.3    0.00014   21.7   0.0   10.8 10  TPR_2          Tetratricopeptide repeat
    1.3e-27   93.7  18.3      0.026   14.7   0.0   10.5 11  TPR_8          Tetratricopeptide repeat
    1.9e-27   93.6  23.1    4.2e-05   23.6   0.2   11.8 11  TPR_17         Tetratricopeptide repeat
      1e-17   63.5  33.3    5.1e-05   22.9   0.0    9.9 10  TPR_11         TPR repeat
    7.2e-17   60.7  34.7     0.0067   17.2   0.4   10.8 10  TPR_14         Tetratricopeptide repeat
      1e-15   56.5  23.0    0.00073   19.4   0.7    9.3  9  TPR_7          Tetratricopeptide repeat
    2.1e-15   57.0  32.4    0.00042   20.9   0.9    7.5  6  TPR_16         Tetratricopeptide repeat
    6.2e-12   45.5  33.0     0.0018   18.4   0.0    7.5  7  TPR_9          Tetratricopeptide repeat
    4.6e-11   43.1  54.1    1.4e-05   25.5   0.4    9.0  6  TPR_19         Tetratricopeptide repeat
    1.1e-10   41.7  52.9    0.00024   21.3   0.4    9.8 10  TPR_12         Tetratricopeptide repeat
    4.4e-08   33.3  39.7       0.45   11.3   0.0   11.1  9  TPR_6          Tetratricopeptide repeat
    4.8e-06   26.7  25.5     0.0009   19.4   0.1    4.6  3  ANAPC3         Anaphase-promoting complex, cyclosome, subunit
  ------ inclusion threshold ------
       0.01   15.7  23.1       0.36   10.8   0.8    7.6  7  TPR_10         Tetratricopeptide repeat
      0.023   13.9   0.1      0.023   13.9   0.1    6.2  4  TPR_15         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.09   1.1e+02       1      33 [.      61      93 ..      61      94 .. 0.95
   2 !   23.6   0.1   2.5e-08     3e-05       2      33 ..      96     127 ..      95     128 .. 0.96
   3 !   16.0   0.1   6.5e-06    0.0078       2      29 ..     130     157 ..     129     159 .. 0.94
   4 !   20.9   0.0   1.8e-07   0.00022       2      34 .]     166     198 ..     165     198 .. 0.96
   5 !   21.7   0.3   1.1e-07   0.00013       2      25 ..     203     226 ..     203     229 .. 0.93
   6 !   13.8   0.0   3.3e-05     0.039       2      33 ..     240     271 ..     239     272 .. 0.92
   7 ?    0.9   0.0      0.39   4.7e+02      16      33 ..     292     309 ..     292     310 .. 0.89
   8 !   17.8   0.0   1.7e-06     0.002       1      32 [.     311     342 ..     311     344 .. 0.90
   9 !   30.2   0.0   2.1e-10   2.5e-07       3      32 ..     347     376 ..     345     377 .. 0.95
  10 !   13.7   1.6   3.4e-05      0.04       2      34 .]     380     413 ..     379     413 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.09
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnPn 33
                a+++  ++ +    g+ d A  +y+  L+ nP+
  CCD22665.1 61 AETWLSIASLAETVGDADRAAMAYDATLQYNPQ 93
                789*****************************7 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 2.5e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 kal  l+++y++  +++ A e ye+AL+ nP+
  CCD22665.1  96 KALTSLAHLYRSRDMFQRAAELYERALQYNPD 127
                 799****************************8 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 6.5e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALe 29 
                 +++  lG++y+ l ++  A   y++AL 
  CCD22665.1 130 DVWATLGHCYLMLDDLTRAYNSYQQALY 157
                 789***********************95 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 1.8e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 k + ++G +y + g +d A+e++ k+Lel+P++
  CCD22665.1 166 KLWHGIGILYDRYGSLDYAEEAFAKVLELDPHF 198
                 78*****************************96 PP

  == domain 5  score: 21.7 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyye 25 
                 +++++lG +y ++gk+++Ale+++
  CCD22665.1 203 EIYFRLGIIYKHQGKWNQALECFR 226
                 58*********************7 PP

  == domain 6  score: 13.8 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 +++++lG ++ ++g++  A e+ye +L  n++
  CCD22665.1 240 DIWFQLGSVLESMGEWTGAKEAYEHVLLQNEH 271
                 79**********************99988876 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.39
                 -HHHHHHHHHHHHHHSTT CS
       TPR_1  16 kydeAleyyekALelnPn 33 
                 ++++Al y  k Le++ +
  CCD22665.1 292 DPQKALGYLLKSLEVDSQ 309
                 689************976 PP

  == domain 8  score: 17.8 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnP 32 
                 a ++y lG +++  ++y  A +++++A+  + 
  CCD22665.1 311 ATTWYHLGRVHMIRNDYTAAYDAFQQAVNRDS 342
                 568************************98776 PP

  == domain 9  score: 30.2 bits;  conditional E-value: 2.1e-10
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnP 32 
                  ++ +G++y++  +y +Al++y +A++lnP
  CCD22665.1 347 FWCSIGVLYYQISQYRDALDAYTRAIRLNP 376
                 6****************************9 PP

  == domain 10  score: 13.7 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHHHH.TT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfk.lgkydeAleyyekALelnPnn 34 
                 +++y lG +y   ++++++Al++y++A +l+P+n
  CCD22665.1 380 EVWYDLGTLYETcNNQLNDALDAYKQAARLDPEN 413
                 6788888888762578****************97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.54   6.4e+02       1      33 [.      61      93 ..      61      94 .. 0.90
   2 !   20.2   0.3   3.4e-07   0.00041       2      33 ..      96     127 ..      95     128 .. 0.93
   3 !   14.6   0.1   2.1e-05     0.025       2      28 ..     130     156 ..     129     161 .. 0.93
   4 !   16.3   0.0   6.1e-06    0.0073       1      33 [.     165     197 ..     165     198 .. 0.95
   5 !   20.4   0.2     3e-07   0.00036       2      27 ..     203     228 ..     202     231 .. 0.91
   6 !   15.8   0.0   9.2e-06     0.011       2      33 ..     240     271 ..     239     272 .. 0.92
   7 ?    0.7   0.0      0.64   7.7e+02      16      33 ..     292     309 ..     291     310 .. 0.87
   8 !   17.9   0.0   1.9e-06    0.0023       2      32 ..     312     342 ..     311     344 .. 0.90
   9 !   21.7   0.0   1.1e-07   0.00014       2      32 ..     346     376 ..     345     378 .. 0.94
  10 !   17.4   0.2   2.9e-06    0.0034       2      34 .]     380     413 ..     379     413 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.54
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPn 33
                ae +  ++ +++  gd ++A+ a+++ l+++P+
  CCD22665.1 61 AETWLSIASLAETVGDADRAAMAYDATLQYNPQ 93
                67888899999999******************7 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 3.4e-07
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +al  l+ +y+ ++ +++A+e++e+Al+++P+
  CCD22665.1  96 KALTSLAHLYRSRDMFQRAAELYERALQYNPD 127
                 578889*************************8 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 2.1e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAl 28 
                 +++  lG +y+ l+d+ +A + +++Al
  CCD22665.1 130 DVWATLGHCYLMLDDLTRAYNSYQQAL 156
                 689***********************9 PP

  == domain 4  score: 16.3 bits;  conditional E-value: 6.1e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 +++++ +G +y + g ++ A+eaf k+leldP+
  CCD22665.1 165 PKLWHGIGILYDRYGSLDYAEEAFAKVLELDPH 197
                 579*****************************7 PP

  == domain 5  score: 20.4 bits;  conditional E-value: 3e-07
       TPR_2   2 ealynlGlayyklgdyeeAleafekA 27 
                 e++++lG +y ++g++++Ale+f+  
  CCD22665.1 203 EIYFRLGIIYKHQGKWNQALECFRYI 228
                 79*********************965 PP

  == domain 6  score: 15.8 bits;  conditional E-value: 9.2e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +++++lG +++ +g++  A+ea+e +l  +++
  CCD22665.1 240 DIWFQLGSVLESMGEWTGAKEAYEHVLLQNEH 271
                 78************************998876 PP

  == domain 7  score: 0.7 bits;  conditional E-value: 0.64
       TPR_2  16 dyeeAleafekAleldPn 33 
                 d+++Al ++ k+le d +
  CCD22665.1 292 DPQKALGYLLKSLEVDSQ 309
                 689**********99865 PP

  == domain 8  score: 17.9 bits;  conditional E-value: 1.9e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                   +y lG++++ ++dy  A +af++A+  d 
  CCD22665.1 312 TTWYHLGRVHMIRNDYTAAYDAFQQAVNRDS 342
                 68************************98876 PP

  == domain 9  score: 21.7 bits;  conditional E-value: 1.1e-07
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                   ++ +G +yy+  +y +Al+a+ +A++l+P
  CCD22665.1 346 IFWCSIGVLYYQISQYRDALDAYTRAIRLNP 376
                 57999*************************9 PP

  == domain 10  score: 17.4 bits;  conditional E-value: 2.9e-06
       TPR_2   2 ealynlGlayyklgdy.eeAleafekAleldPnn 34 
                 e++y lG +y+  ++  ++Al+a+++A +ldP+n
  CCD22665.1 380 EVWYDLGTLYETCNNQlNDALDAYKQAARLDPEN 413
                 89**********99999***************97 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.012        15       1      33 [.      61      93 ..      61      94 .. 0.93
   2 !   13.7   0.1   4.5e-05     0.054       2      33 ..      96     127 ..      95     128 .. 0.95
   3 !   10.1   0.1   0.00065      0.78       2      28 ..     130     156 ..     129     157 .. 0.95
   4 !   11.1   0.0   0.00031      0.37       2      33 ..     166     197 ..     165     198 .. 0.94
   5 !    7.4   0.1     0.005       5.9       2      25 ..     203     226 ..     203     229 .. 0.95
   6 !   10.4   0.0   0.00051      0.61       3      29 ..     241     267 ..     240     272 .. 0.90
   7 ?   -1.7   0.0       3.9   4.7e+03       1      11 [.     273     283 ..     273     286 .. 0.88
   8 ?   -2.8   0.0         9   1.1e+04      19      33 ..     295     309 ..     292     310 .. 0.71
   9 !   14.7   0.0   2.2e-05     0.026       2      32 ..     312     342 ..     311     344 .. 0.92
  10 !   11.7   0.0    0.0002      0.24       4      32 ..     348     376 ..     346     377 .. 0.96
  11 !   11.4   0.1   0.00026      0.31       2      34 .]     380     413 ..     379     413 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.012
                CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  1 aeayynlgsiylklgdyeeAkeyyekaleldpd 33
                ae ++ ++s+ ++ gd + A  +y   l+++p+
  CCD22665.1 61 AETWLSIASLAETVGDADRAAMAYDATLQYNPQ 93
                789*********************999999886 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4.5e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +a+  l+++y++   ++ A e ye+al+++pd
  CCD22665.1  96 KALTSLAHLYRSRDMFQRAAELYERALQYNPD 127
                 68899**************************7 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00065
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 +++  lg++yl l d+  A  +y++al
  CCD22665.1 130 DVWATLGHCYLMLDDLTRAYNSYQQAL 156
                 79************************8 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 0.00031
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++++ +g +y+  g ++ A+e++ k+leldp 
  CCD22665.1 166 KLWHGIGILYDRYGSLDYAEEAFAKVLELDPH 197
                 689***************************95 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.005
                 CHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyye 25 
                 e+y++lg iy+ +g+ ++A e+++
  CCD22665.1 203 EIYFRLGIIYKHQGKWNQALECFR 226
                 68********************97 PP

  == domain 6  score: 10.4 bits;  conditional E-value: 0.00051
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 ++++lgs+++++g+   Ake+ye++l 
  CCD22665.1 241 IWFQLGSVLESMGEWTGAKEAYEHVLL 267
                 8**********************9985 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 3.9
                 CCHHHHHHHHH CS
       TPR_8   1 aeayynlgsiy 11 
                 a+++++lg++y
  CCD22665.1 273 AKVLQQLGCLY 283
                 68999*****9 PP

  == domain 8  score: -2.8 bits;  conditional E-value: 9
                 HHHHHHHHHHHHHHH CS
       TPR_8  19 eAkeyyekaleldpd 33 
                 +A  y+ k le d +
  CCD22665.1 295 KALGYLLKSLEVDSQ 309
                 566688899998876 PP

  == domain 9  score: 14.7 bits;  conditional E-value: 2.2e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldp 32 
                   +y+lg++++  +dy +A  ++++a+  d 
  CCD22665.1 312 TTWYHLGRVHMIRNDYTAAYDAFQQAVNRDS 342
                 68*************************9886 PP

  == domain 10  score: 11.7 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldp 32 
                 ++ +g +y +  +y  A  +y +a++l+p
  CCD22665.1 348 WCSIGVLYYQISQYRDALDAYTRAIRLNP 376
                 99**************************9 PP

  == domain 11  score: 11.4 bits;  conditional E-value: 0.00026
                 CHHHHHHHHH.HHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiy.lklgdyeeAkeyyekaleldpdn 34 
                 e++y lg +y    ++++ A  +y++a +ldp+n
  CCD22665.1 380 EVWYDLGTLYeTCNNQLNDALDAYKQAARLDPEN 413
                 89********5556789***************86 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       6.5   7.7e+03      13      32 ..      61      80 ..      60      81 .. 0.89
   2 !   10.6   0.2   0.00052      0.62       2      32 ..      84     114 ..      83     116 .. 0.92
   3 !   23.6   0.2   3.5e-08   4.2e-05       1      32 [.     117     148 ..     117     149 .. 0.96
   4 ?    2.8   0.1      0.16   1.9e+02       2      32 ..     152     184 ..     151     186 .. 0.84
   5 !    6.9   0.0    0.0076       9.1      14      34 .]     203     223 ..     187     223 .. 0.81
   6 ?    3.1   0.0      0.13   1.5e+02      13      33 ..     239     259 ..     237     260 .. 0.88
   7 ?    5.4   0.1     0.023        27       2      31 ..     262     295 ..     261     297 .. 0.83
   8 !   12.6   0.0   0.00012      0.14       2      32 ..     300     330 ..     299     331 .. 0.93
   9 !   12.1   0.0   0.00017       0.2       2      33 ..     334     365 ..     333     366 .. 0.95
  10 !   20.5   0.3   3.5e-07   0.00042       1      32 [.     367     399 ..     367     401 .. 0.87
  11 ?    0.1   0.0       1.1   1.3e+03       1      12 [.     402     413 ..     402     417 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6.5
      TPR_17 13 adaynnLAelllknGdlmtA 32
                a+ +   A l +  Gd ++A
  CCD22665.1 61 AETWLSIASLAETVGDADRA 80
                6789999999999***9998 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00052
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 y   l+++P + +a++ LA l++++  +++A
  CCD22665.1  84 YDATLQYNPQSTKALTSLAHLYRSRDMFQRA 114
                 8899********************9999998 PP

  == domain 3  score: 23.6 bits;  conditional E-value: 3.5e-08
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtA 32 
                 ly++al+++P+ +d++  L+ ++l++ dl +A
  CCD22665.1 117 LYERALQYNPDLSDVWATLGHCYLMLDDLTRA 148
                 7**************************99887 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.16
      TPR_17   2 ylkalel..dPnnadaynnLAelllknGdlmtA 32 
                 y++al +  +Pn +++++  + l+ + G l+ A
  CCD22665.1 152 YQQALYHltNPNVPKLWHGIGILYDRYGSLDYA 184
                 8888888889**************988866655 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.0076
      TPR_17  14 daynnLAelllknGdlmtArq 34 
                 + y+ L+ +++++G++ +A++
  CCD22665.1 203 EIYFRLGIIYKHQGKWNQALE 223
                 78***************9975 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.13
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 +d +++L+ +l++ G++  A+
  CCD22665.1 239 WDIWFQLGSVLESMGEWTGAK 259
                 689************988876 PP

  == domain 7  score: 5.4 bits;  conditional E-value: 0.023
      TPR_17   2 ylkaleldPnnadaynnLAelllknG....dlmt 31 
                 y+ +l ++  +a+++++L+ l+ +n+    d+++
  CCD22665.1 262 YEHVLLQNEHHAKVLQQLGCLYGMNNvsfyDPQK 295
                 999999****************998855555555 PP

  == domain 8  score: 12.6 bits;  conditional E-value: 0.00012
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 +lk+le d  +a  ++ L++++  ++d+  A
  CCD22665.1 300 LLKSLEVDSQDATTWYHLGRVHMIRNDYTAA 330
                 79************************99766 PP

  == domain 9  score: 12.1 bits;  conditional E-value: 0.00017
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 +++a+ +d  n+ +++  ++l++++ ++++A+
  CCD22665.1 334 FQQAVNRDSRNPIFWCSIGVLYYQISQYRDAL 365
                 89***************************996 PP

  == domain 10  score: 20.5 bits;  conditional E-value: 3.5e-07
      TPR_17   1 lylkaleldPnnadaynnLAelll.knGdlmtA 32 
                 +y++a++l+P  +++++ L++l++  n++l +A
  CCD22665.1 367 AYTRAIRLNPYISEVWYDLGTLYEtCNNQLNDA 399
                 59*********************9566678777 PP

  == domain 11  score: 0.1 bits;  conditional E-value: 1.1
      TPR_17   1 lylkaleldPnn 12 
                 +y++a++ldP n
  CCD22665.1 402 AYKQAARLDPEN 413
                 59********99 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.18   2.1e+02       9      38 ..      76     105 ..      75     107 .. 0.89
   2 !   16.1   0.1   5.5e-06    0.0065       2      40 ..     103     141 ..     102     143 .. 0.91
   3 ?    0.6   0.3      0.38   4.5e+02      10      21 ..     145     156 ..     142     179 .. 0.68
   4 ?    4.4   0.2     0.025        30       9      42 .]     180     216 ..     173     216 .. 0.75
   5 ?    4.1   0.0     0.031        37       3      17 ..     211     225 ..     209     226 .. 0.87
   6 ?   -0.2   0.0      0.67     8e+02       6      20 ..     251     265 ..     240     286 .. 0.62
   7 !    6.9   0.0    0.0041       4.9      17      38 ..     300     321 ..     294     322 .. 0.86
   8 !   22.9   0.0   4.3e-08   5.1e-05       1      40 [.     318     357 ..     318     359 .. 0.96
   9 !   18.4   1.1   1.1e-06    0.0013       4      39 ..     355     390 ..     354     391 .. 0.95
  10 !   16.7   0.4   3.6e-06    0.0043       8      29 ..     394     415 ..     393     420 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.18
      TPR_11   9 kyeeAieaYkkAlkldPdnaeayynLGlay 38 
                 + + A  aY + l+++P++  a+  L+++y
  CCD22665.1  76 DADRAAMAYDATLQYNPQSTKALTSLAHLY 105
                 56778889******************9998 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 5.5e-06
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 ++y+++  +  A e Y++Al+++Pd  +++  LG+ y++
  CCD22665.1 103 HLYRSRDMFQRAAELYERALQYNPDLSDVWATLGHCYLM 141
                 67899999999***********************99986 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.38
      TPR_11  10 yeeAieaYkkAl 21 
                 ++ A ++Y++Al
  CCD22665.1 145 LTRAYNSYQQAL 156
                 678899999998 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.025
      TPR_11   9 kyeeAieaYkkAlkldPdna...eayynLGlayykqG 42 
                  ++ A ea+ k l+ldP +    e+y+ LG +y  qG
  CCD22665.1 180 SLDYAEEAFAKVLELDPHFEkanEIYFRLGIIYKHQG 216
                 5556667777888888865433389********9988 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.031
      TPR_11   3 ayyeqGkyeeAieaY 17 
                 +y  qGk+++A+e++
  CCD22665.1 211 IYKHQGKWNQALECF 225
                 7999*********97 PP

  == domain 6  score: -0.2 bits;  conditional E-value: 0.67
      TPR_11   6 eqGkyeeAieaYkkA 20 
                 + G++++A eaY+  
  CCD22665.1 251 SMGEWTGAKEAYEHV 265
                 567777777777655 PP

  == domain 7  score: 6.9 bits;  conditional E-value: 0.0041
      TPR_11  17 YkkAlkldPdnaeayynLGlay 38 
                 + k l+ d+++a+ +y+LG ++
  CCD22665.1 300 LLKSLEVDSQDATTWYHLGRVH 321
                 57889**************887 PP

  == domain 8  score: 22.9 bits;  conditional E-value: 4.3e-08
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 G++ + +++y++A  a+++A++ d+ n+ +++ +G++yy+
  CCD22665.1 318 GRVHMIRNDYTAAYDAFQQAVNRDSRNPIFWCSIGVLYYQ 357
                 889999*********************************8 PP

  == domain 9  score: 18.4 bits;  conditional E-value: 1.1e-06
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 yy+  +y +A+ aY +A++l+P   e++y LG +y 
  CCD22665.1 355 YYQISQYRDALDAYTRAIRLNPYISEVWYDLGTLYE 390
                 9*******************************9885 PP

  == domain 10  score: 16.7 bits;  conditional E-value: 3.6e-06
      TPR_11   8 GkyeeAieaYkkAlkldPdnae 29 
                 +++++A+ aYk+A +ldP+n  
  CCD22665.1 394 NQLNDALDAYKQAARLDPENIH 415
                 89*****************975 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.3    0.0018       2.2       2      42 ..      62     102 ..      61     104 .. 0.93
   2 !   17.2   0.4   5.6e-06    0.0067       3      42 ..      97     136 ..      95     138 .. 0.90
   3 ?    4.6   0.0     0.062        74       2      28 ..     130     156 ..     129     170 .. 0.81
   4 !    8.1   0.0    0.0046       5.5       1      43 [.     165     207 ..     165     209 .. 0.88
   5 ?    3.0   0.0      0.19   2.3e+02       3      25 ..     204     226 ..     202     233 .. 0.92
   6 !   13.1   0.0   0.00012      0.14       2      42 ..     240     280 ..     239     280 .. 0.93
   7 ?    6.4   0.0     0.016        19      16      43 ..     292     319 ..     291     320 .. 0.95
   8 !   10.0   0.0    0.0011       1.3       3      37 ..     313     347 ..     311     352 .. 0.88
   9 !   11.7   0.0   0.00031      0.37      10      43 ..     354     387 ..     345     388 .. 0.88
  10 !   13.3   0.1   9.6e-05      0.11       2      41 ..     380     420 ..     379     420 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0018
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 e +l +a++ ++ Gd d+A+ ++++ l+ +P++  a++ la
  CCD22665.1  62 ETWLSIASLAETVGDADRAAMAYDATLQYNPQSTKALTSLA 102
                 78*******************************99998887 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 5.6e-06
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 al  la++++ ++ +++A++l++ral+ +Pd  ++w  l+
  CCD22665.1  97 ALTSLAHLYRSRDMFQRAAELYERALQYNPDLSDVWATLG 136
                 66679**************************999998765 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.062
      TPR_14   2 eallalaeallalGdpdeAiallrral 28 
                 ++++ l++ +l l+d+ +A + +++al
  CCD22665.1 130 DVWATLGHCYLMLDDLTRAYNSYQQAL 156
                 5799*********************95 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0046
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 p+++  ++ ++ + G +d A++++ ++l+l+P ++ a+  + +
  CCD22665.1 165 PKLWHGIGILYDRYGSLDYAEEAFAKVLELDPHFEKANEIYFR 207
                 67899999************************99988866655 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.19
      TPR_14   3 allalaeallalGdpdeAiallr 25 
                  + +l+ ++ ++G++ +A++++r
  CCD22665.1 204 IYFRLGIIYKHQGKWNQALECFR 226
                 6889****************997 PP

  == domain 6  score: 13.1 bits;  conditional E-value: 0.00012
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 + + +l+++l+  G++ +A ++++ +l ++  +a ++ +l+
  CCD22665.1 240 DIWFQLGSVLESMGEWTGAKEAYEHVLLQNEHHAKVLQQLG 280
                 789*****************************999998885 PP

  == domain 7  score: 6.4 bits;  conditional E-value: 0.016
      TPR_14  16 dpdeAiallrralalaPddaeawlllaq 43 
                 dp++A+ +l + l+ + +da++w++l++
  CCD22665.1 292 DPQKALGYLLKSLEVDSQDATTWYHLGR 319
                 799***********************98 PP

  == domain 8  score: 10.0 bits;  conditional E-value: 0.0011
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaea 37 
                  ++ l+++++ + d+ +A +++++a+ ++  ++ +
  CCD22665.1 313 TWYHLGRVHMIRNDYTAAYDAFQQAVNRDSRNPIF 347
                 69***********************9887766655 PP

  == domain 9  score: 11.7 bits;  conditional E-value: 0.00031
      TPR_14  10 allalGdpdeAiallrralalaPddaeawlllaq 43 
                 ++++  ++++A++++ ra++l+P   e+w+ l+ 
  CCD22665.1 354 LYYQISQYRDALDAYTRAIRLNPYISEVWYDLGT 387
                 6778889**********************99986 PP

  == domain 10  score: 13.3 bits;  conditional E-value: 9.6e-05
      TPR_14   2 eallalaealla.lGdpdeAiallrralalaPddaeawlll 41 
                 e++++l+ ++++ + ++ +A++++++a +l+P++  ++ +l
  CCD22665.1 380 EVWYDLGTLYETcNNQLNDALDAYKQAARLDPENIHIRKRL 420
                 78********983578*****************98888765 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.8   2.2e+03       1      24 [.      63      86 ..      63      94 .. 0.80
   2 !   19.4   0.7   6.1e-07   0.00073       1      31 [.      97     125 ..      97     131 .. 0.84
   3 ?    2.2   0.3      0.19   2.3e+02       4      29 ..     134     160 ..     131     181 .. 0.86
   4 !   11.9   0.0   0.00016      0.19       2      23 ..     205     226 ..     204     232 .. 0.91
   5 !    9.3   0.0     0.001       1.2       2      32 ..     242     270 ..     241     274 .. 0.84
   6 ?    1.3   0.0      0.37   4.4e+02      14      31 ..     292     309 ..     292     312 .. 0.82
   7 ?    4.9   0.0     0.026        31       1      31 [.     313     341 ..     313     345 .. 0.89
   8 !   12.4   0.1    0.0001      0.12       2      34 ..     348     378 ..     348     380 .. 0.91
   9 ?    2.8   0.1      0.12   1.4e+02       4      34 ..     384     413 ..     381     414 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.8
       TPR_7  1 aLlnLarlysrlGdyeeAielyeq 24
                ++l +a+l + +Gd ++A+  y +
  CCD22665.1 63 TWLSIASLAETVGDADRAAMAYDA 86
                688999***********9866666 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 6.1e-07
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 aL  La+ly+++  +++A+elye+  al + 
  CCD22665.1  97 ALTSLAHLYRSRDMFQRAAELYER--ALQYN 125
                 7999********************..55444 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.19
       TPR_7   4 nLarlysrlGdyeeAielyeqsL.alt 29 
                  L+++y  l d  +A   y+q+L  lt
  CCD22665.1 134 TLGHCYLMLDDLTRAYNSYQQALyHLT 160
                 699999999************997776 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.00016
       TPR_7   2 LlnLarlysrlGdyeeAielye 23 
                 +++L+ +y  +G++ +A+e+++
  CCD22665.1 205 YFRLGIIYKHQGKWNQALECFR 226
                 789*****************98 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.001
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 +++L+++ +++G++  A e ye   +l   +
  CCD22665.1 242 WFQLGSVLESMGEWTGAKEAYEH--VLLQNE 270
                 579********************..666555 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.37
       TPR_7  14 dyeeAielyeqsLaltkd 31 
                 d ++A++++ +sL+++++
  CCD22665.1 292 DPQKALGYLLKSLEVDSQ 309
                 679********8888765 PP

  == domain 7  score: 4.9 bits;  conditional E-value: 0.026
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 +++ L+r++  ++dy  A + ++q  a+ +d
  CCD22665.1 313 TWYHLGRVHMIRNDYTAAYDAFQQ--AVNRD 341
                 6899********************..88777 PP

  == domain 8  score: 12.4 bits;  conditional E-value: 0.0001
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkdped 34 
                 ++ +++ly +  +y++A++ y++  a++  p++
  CCD22665.1 348 WCSIGVLYYQISQYRDALDAYTR--AIRLNPYI 378
                 5899*******************..99999987 PP

  == domain 9  score: 2.8 bits;  conditional E-value: 0.12
       TPR_7   4 nLarlysr.lGdyeeAielyeqsLaltkdped 34 
                  L+ ly+   ++  +A++ y+q  a + dpe+
  CCD22665.1 384 DLGTLYETcNNQLNDALDAYKQ--AARLDPEN 413
                 677777777788899*******..99999986 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.5     0.025        29       3      40 ..      67     101 ..      65     102 .. 0.84
   2 !   20.9   0.9   3.6e-07   0.00042       4      59 ..     102     155 ..      99     164 .. 0.83
   3 !   11.4   0.0   0.00034       0.4      14      61 ..     182     229 ..     171     235 .. 0.84
   4 !   12.3   0.0   0.00018      0.21       3      57 ..     208     262 ..     206     266 .. 0.89
   5 !   14.1   0.0   4.6e-05     0.055      15      62 ..     295     339 ..     292     345 .. 0.78
   6 !   20.7   1.1   4.1e-07   0.00049       4      66 ..     352     412 ..     349     414 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.025
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllll 40 
                  a +a   gd d+Aa a++a+l ++   P+   Al  l
  CCD22665.1  67 IASLAETVGDADRAAMAYDATLQYN---PQSTKALTSL 101
                 67888899*****************...9887777655 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 3.6e-07
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa.alyra 59 
                 a++++ +  +++Aa+++e+al ++   Pd  + +  lg ++l + +l++A   + +a
  CCD22665.1 102 AHLYRSRDMFQRAAELYERALQYN---PDLSDVWATLGHCYLMLDDLTRAYnSYQQA 155
                 555555555***************...**********************97554444 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00034
      TPR_16  14 ddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 d A++a+  +l++dp    a e ++ lg ++ +qg +  A++ +r  l
  CCD22665.1 182 DYAEEAFAKVLELDPHFEKANEIYFRLGIIYKHQGKWNQALECFRYIL 229
                 569***********88888*****************999998887766 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 0.00018
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaaly 57 
                 l+ ++  +g++ +A++ ++  l + p + + ++ ++ lg ++   g++++A ++y
  CCD22665.1 208 LGIIYKHQGKWNQALECFRYILNQPPAPLQEWDIWFQLGSVLESMGEWTGAKEAY 262
                 6777888******************99999**************99999996555 PP

  == domain 5  score: 14.1 bits;  conditional E-value: 4.6e-05
      TPR_16  15 dAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 +   al  +lk+  +++++a  +++lg+++  ++++++A ++++ a+ 
  CCD22665.1 295 K---ALGYLLKSLEVDSQDATTWYHLGRVHMIRNDYTAAYDAFQQAVN 339
                 4...445556666666************************99999874 PP

  == domain 6  score: 20.7 bits;  conditional E-value: 4.1e-07
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaal.rqgrlaeAaalyraalraapd 66 
                 + ++++  +y+dA+ a+++a++++   P   e ++ lg ++   ++ l +A+++y+ a+r +p 
  CCD22665.1 352 GVLYYQISQYRDALDAYTRAIRLN---PYISEVWYDLGTLYEtCNNQLNDALDAYKQAARLDPE 412
                 66899*******************...99999**********6678888888********9997 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.19   2.2e+02      29      65 ..      61      97 ..      56     104 .. 0.68
   2 !   12.1   2.2   0.00014      0.16       3      64 ..      69     130 ..      67     134 .. 0.92
   3 !   13.3   2.1   5.9e-05      0.07       2      56 ..     102     156 ..     101     161 .. 0.94
   4 !    9.2   0.1    0.0011       1.3       3      68 ..     137     204 ..     135     209 .. 0.87
   5 !   18.4   0.0   1.5e-06    0.0018       3      62 ..     210     272 ..     208     279 .. 0.85
   6 !   15.1   0.0   1.6e-05      0.02      10      59 ..     292     341 ..     290     346 .. 0.92
   7 !    9.6   0.3   0.00085         1       5      65 ..     355     416 ..     351     428 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.19
       TPR_9 29 peerrdRGlllaqlGclsaAladLeaylalapdapda 65
                +e ++  + l + +G+   A+++ +a l+ +p+   a
  CCD22665.1 61 AETWLSIASLAETVGDADRAAMAYDATLQYNPQSTKA 97
                5666777777777777777777777777777766655 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00014
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 ++a    d++ra  +++  l+ +P++   +   + l+  ++ ++ A++  e++l+ +pd  d
  CCD22665.1  69 SLAETVGDADRAAMAYDATLQYNPQSTKALTSLAHLYRSRDMFQRAAELYERALQYNPDLSD 130
                 5677889*************************************************999766 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 5.9e-05
       TPR_9   2 kaiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeayl 56 
                  +++ +++ ++ra + +er l+ +Pd  + +   G ++  l++l  A +  +++l
  CCD22665.1 102 AHLYRSRDMFQRAAELYERALQYNPDLSDVWATLGHCYLMLDDLTRAYNSYQQAL 156
                 67899********************************************999988 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0011
       TPR_9   3 aiaireedweralavverllll..aPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeai 68 
                 ++++  +d  ra   ++  l+   +P+ p ++   G+l+ + G l  A +++   l+l+p+ + a  i
  CCD22665.1 137 HCYLMLDDLTRAYNSYQQALYHltNPNVPKLWHGIGILYDRYGSLDYAEEAFAKVLELDPHFEKANEI 204
                 567778899999998888887667************************************87777655 PP

  == domain 5  score: 18.4 bits;  conditional E-value: 1.5e-06
       TPR_9   3 aiaireedweralavverllllaPddpee...rrdRGlllaqlGclsaAladLeaylalapda 62 
                  i+  + +w +al++   +l  +P + +e   ++  G +l+ +G + +A ++ e+ l ++++ 
  CCD22665.1 210 IIYKHQGKWNQALECFRYILNQPPAPLQEwdiWFQLGSVLESMGEWTGAKEAYEHVLLQNEHH 272
                 689999****************99876653337************************888765 PP

  == domain 6  score: 15.1 bits;  conditional E-value: 1.6e-05
       TPR_9  10 dweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylala 59 
                 d ++al ++   l ++++d+  ++  G++++ ++++ aA +++++++  +
  CCD22665.1 292 DPQKALGYLLKSLEVDSQDATTWYHLGRVHMIRNDYTAAYDAFQQAVNRD 341
                 7799*****************************************99766 PP

  == domain 7  score: 9.6 bits;  conditional E-value: 0.00085
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlG.clsaAladLeaylalapdapda 65 
                 + +  ++  al ++ r + l+P   e ++d G l++  + +l+ Al++  ++++l+p++  +
  CCD22665.1 355 YYQISQYRDALDAYTRAIRLNPYISEVWYDLGTLYETCNnQLNDALDAYKQAARLDPENIHI 416
                 666778999**************************997527999***********9954433 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.7      0.01        12       5      35 ..      75     105 ..      74     109 .. 0.94
   2 !   25.5   0.4   1.2e-08   1.4e-05       7      57 ..     111     161 ..     106     168 .. 0.89
   3 !   15.5   0.0   1.5e-05     0.018       5      57 ..     179     234 ..     177     239 .. 0.90
   4 ?    3.7   0.0     0.073        87      25      58 ..     239     272 ..     237     280 .. 0.77
   5 !   11.1   0.0   0.00037      0.45       6      55 ..     292     341 ..     285     347 .. 0.93
   6 !   15.4   0.9   1.7e-05      0.02       6      57 ..     360     412 ..     356     423 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.01
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeal 35 
                 gd ++A+ ++ + lq++p++  a+  LA ++
  CCD22665.1  75 GDADRAAMAYDATLQYNPQSTKALTSLAHLY 105
                 89**************************998 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 1.2e-08
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 +++A++l+e+alq++p+ +++++ L  ++l l +l+ A +  ++++ +  +
  CCD22665.1 111 FQRAAELYERALQYNPDLSDVWATLGHCYLMLDDLTRAYNSYQQALYHLTN 161
                 89************************************9999888776666 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 1.5e-05
      TPR_19   5 gdyaeAlalleqalqedpk...naearllLAeallalgqldeAealLdalpeedpd 57 
                 g ++ A ++++++l+ dp+     e+  +L +++  +g +++A ++   ++++ p 
  CCD22665.1 179 GSLDYAEEAFAKVLELDPHfekANEIYFRLGIIYKHQGKWNQALECFRYILNQPPA 234
                 6788899************888888899*******************999998775 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.073
      TPR_19  25 aearllLAeallalgqldeAealLdalpeedpdd 58 
                 ++++ +L  +l ++g+++ A+++ + +++++  +
  CCD22665.1 239 WDIWFQLGSVLESMGEWTGAKEAYEHVLLQNEHH 272
                 5788888889999999999999999888887664 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.00037
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeed 55 
                 d++ Al +l + l+ d ++a  ++ L ++++  +++++A ++ +++ + d
  CCD22665.1 292 DPQKALGYLLKSLEVDSQDATTWYHLGRVHMIRNDYTAAYDAFQQAVNRD 341
                 899************************************99999988776 PP

  == domain 6  score: 15.4 bits;  conditional E-value: 1.7e-05
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallal.gqldeAealLdalpeedpd 57 
                 +y +Al+++++a+  +p  +e++++L  ++    +ql++A ++ +++ + dp 
  CCD22665.1 360 QYRDALDAYTRAIRLNPYISEVWYDLGTLYETCnNQLNDALDAYKQAARLDPE 412
                 89******************************99*************999997 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3      0.24   2.8e+02      37      73 ..      53      89 ..      35      93 .. 0.76
   2 !    9.1   4.7    0.0013       1.5       5      73 ..      63     123 ..      59     127 .. 0.74
   3 !   14.0   5.4     4e-05     0.048      22      72 ..     107     156 ..      93     161 .. 0.92
   4 !   14.3   0.3   3.2e-05     0.038       5      75 ..     131     195 ..     127     197 .. 0.88
   5 !    9.0   0.0    0.0014       1.7       5      26 ..     204     225 ..     200     230 .. 0.66
   6 !    9.7   0.2   0.00083      0.99       6      74 ..     242     306 ..     240     309 .. 0.80
   7 !   10.2   0.1   0.00059       0.7       3      31 ..     311     339 ..     291     343 .. 0.58
   8 !   21.3   0.4     2e-07   0.00024       3      74 ..     311     374 ..     309     376 .. 0.83
   9 !    8.7   0.2    0.0017       2.1      42      76 ..     376     411 ..     374     412 .. 0.87
  10 ?   -0.9   1.0       1.7     2e+03      59      73 ..     516     530 ..     514     541 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.24
      TPR_12 37 lGpdhpltattlrnLgrlyralgryeeAlelleeala 73
                l+p   +ta+t   ++ l +  g+ + A  ++  +l+
  CCD22665.1 53 LDPVAQATAETWLSIASLAETVGDADRAAMAYDATLQ 89
                5555678999999999999999999999999877665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0013
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 ++  +a++    g+ d A   +++ l+       p++     +l  L+ lyr ++ ++ A el+e+al+
  CCD22665.1  63 TWLSIASLAETVGDADRAAMAYDATLQYN-----PQS---TKALTSLAHLYRSRDMFQRAAELYERALQ 123
                 55556666666666666666666664444.....554...569************************97 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 4e-05
      TPR_12  22 AlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 +++++++a e+++r+l  ++p+++ +  +Lg +y++l+++  A + +++al
  CCD22665.1 107 SRDMFQRAAELYERAL-QYNPDLSDVWATLGHCYLMLDDLTRAYNSYQQAL 156
                 7899********8887.689******************************8 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 3.2e-05
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 ++  l+++++ l +++ A   +++al         ++p++    +++g+ly++ g ++ A+e++ ++l+++
  CCD22665.1 131 VWATLGHCYLMLDDLTRAYNSYQQALYHL------TNPNVPKLWHGIGILYDRYGSLDYAEEAFAKVLELD 195
                 55469********************8888......36778889*************************986 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.0014
      TPR_12   5 alnnlaavlrrlgrydeAlell 26 
                 ++ +l+ ++ ++g++ +Ale++
  CCD22665.1 204 IYFRLGIIYKHQGKWNQALECF 225
                 4556677777777777777666 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.00083
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralg....ryeeAlelleealai 74 
                 + +l++vl  +g+++ A e +e++l +      ++h   a +l+ Lg ly + +    ++++Al +l ++l++
  CCD22665.1 242 WFQLGSVLESMGEWTGAKEAYEHVLLQN-----EHH---AKVLQQLGCLYGMNNvsfyDPQKALGYLLKSLEV 306
                 558*********************8888.....555...8899999999977766666777777777777765 PP

  == domain 7  score: 10.2 bits;  conditional E-value: 0.00059
      TPR_12   3 atalnnlaavlrrlgrydeAlellekale 31 
                 at++++l+ v++ + +y+ A + +++a++
  CCD22665.1 311 ATTWYHLGRVHMIRNDYTAAYDAFQQAVN 339
                 45555555555555555555555555554 PP

  == domain 8  score: 21.3 bits;  conditional E-value: 2e-07
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 at++++l+ v++ + +y+ A + +++a+++ +r          +  + +g ly++  +y++Al+++++a+++
  CCD22665.1 311 ATTWYHLGRVHMIRNDYTAAYDAFQQAVNRDSRN--------PIFWCSIGVLYYQISQYRDALDAYTRAIRL 374
                 7788888888888888888888888887777433........4689***********************997 PP

  == domain 9  score: 8.7 bits;  conditional E-value: 0.0017
      TPR_12  42 pltattlrnLgrlyr.algryeeAlelleealaiae 76 
                 p+ +++ ++Lg+ly+   +++ +Al+++++a ++++
  CCD22665.1 376 PYISEVWYDLGTLYEtCNNQLNDALDAYKQAARLDP 411
                 66788899******55***************99875 PP

  == domain 10  score: -0.9 bits;  conditional E-value: 1.7
      TPR_12  59 gryeeAlelleeala 73 
                 +++++Al+  ++al+
  CCD22665.1 516 EQQQQALQQQQQALQ 530
                 456666666666664 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.4     0.063        76      13      33 .]      73      94 ..      30      94 .. 0.84
   2 !    8.1   0.5    0.0037       4.4       6      32 ..     101     127 ..      96     128 .. 0.90
   3 ?    3.2   0.1      0.14   1.7e+02       6      27 ..     135     156 ..     131     157 .. 0.92
   4 ?    1.0   0.0       0.7   8.3e+02       6      31 ..     171     196 ..     168     197 .. 0.87
   5 !   11.3   0.0   0.00038      0.45       3      27 ..     205     229 ..     203     232 .. 0.88
   6 !    7.3   0.0    0.0069       8.2       3      26 ..     242     265 ..     240     268 .. 0.89
   7 ?    5.2   0.0     0.032        38       4      29 ..     315     340 ..     312     343 .. 0.85
   8 !    8.3   0.1    0.0033         4       6      31 ..     351     376 ..     350     376 .. 0.91
   9 ?    6.0   0.1     0.017        21       2      32 ..     381     412 ..     380     413 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.063
                H.HHHHHHHHHHHHHHHH-TT- CS
       TPR_6 13 l.gdtdkAlealerlikeYPdS 33
                + gd+d+A  a++  ++  P+S
  CCD22665.1 73 TvGDADRAAMAYDATLQYNPQS 94
                148*****************98 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0037
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYPd 32 
                 la +yr+ +  ++A e++er ++  Pd
  CCD22665.1 101 LAHLYRSRDMFQRAAELYERALQYNPD 127
                 789999999****************98 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerli 27 
                 l+ +y++l+d ++A   +++ +
  CCD22665.1 135 LGHCYLMLDDLTRAYNSYQQAL 156
                 799****************975 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.7
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYP 31 
                 ++ +y + g  d A ea+ ++++  P
  CCD22665.1 171 IGILYDRYGSLDYAEEAFAKVLELDP 196
                 78999997799***********9887 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.00038
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerli 27 
                 +++l+  y+ +g++ +Ale ++ ++
  CCD22665.1 205 YFRLGIIYKHQGKWNQALECFRYIL 229
                 8*******************98666 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0069
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerl 26 
                  ++l+  ++++g+++ A+ea+e +
  CCD22665.1 242 WFQLGSVLESMGEWTGAKEAYEHV 265
                 699******************966 PP

  == domain 7  score: 5.2 bits;  conditional E-value: 0.032
                 HHHHHHHH.HHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyr.klgdtdkAlealerlike 29 
                 y+l++ +  +  d+++A +a+++ +++
  CCD22665.1 315 YHLGRVHMiRN-DYTAAYDAFQQAVNR 340
                 78888888566.************997 PP

  == domain 8  score: 8.3 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYP 31 
                 ++ +y++  ++++Al+a+ r i+  P
  CCD22665.1 351 IGVLYYQISQYRDALDAYTRAIRLNP 376
                 799****77*************9877 PP

  == domain 9  score: 6.0 bits;  conditional E-value: 0.017
                 HHHHHHHHHHH.HHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 Alyklalsyrk.lgdtdkAlealerlikeYPd 32 
                 + y l+ +y+   ++  +Al+a+++  +  P+
  CCD22665.1 381 VWYDLGTLYETcNNQLNDALDAYKQAARLDPE 412
                 7899*********************9998886 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   2.9   1.7e-06    0.0021       5      80 ..      77     153 ..      74     161 .. 0.90
   2 ?    5.0   0.0     0.024        28       8      52 ..     184     232 ..     178     265 .. 0.68
   3 !   19.4   0.1   7.6e-07    0.0009      12      80 ..     300     369 ..     292     371 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3   5 yknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                  + A + ++  l+++++s +++  lA  + ++  ++rA el+++a + n+    ++ ++++c+l L+ +  A++ ++
  CCD22665.1  77 ADRAAMAYDATLQYNPQSTKALTSLAHLYRSRDMFQRAAELYERAlQYNPDLSDVWATLGHCYLMLDDLTRAYNSYQ 153
                 6889999**************************************99999999***********9988777776554 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.024
                 HHHHHHHHH...HHH--HHHHHH.HHHHHHHTT-HHHHHHHHHCT.SHH CS
      ANAPC3   8 Aiflaerlla..aetespedayl.lAlclylngqykrAyellrka.kln 52 
                 A+  + ++l+   + e ++ +y+ l+  + ++g++++A+e +r   ++ 
  CCD22665.1 184 AEEAFAKVLEldPHFEKANEIYFrLGIIYKHQGKWNQALECFRYIlNQP 232
                 6666677776323445555577768***************999985555 PP

  == domain 3  score: 19.4 bits;  conditional E-value: 7.6e-07
                 HHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  12 aerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 + + l+ +++++   y l+ ++  +++y+ Ay+ +++a + +s+++  +  ++  ++++++y +A++a+ 
  CCD22665.1 300 LLKSLEVDSQDATTWYHLGRVHMIRNDYTAAYDAFQQAvNRDSRNPIFWCSIGVLYYQISQYRDALDAYT 369
                 444455555666666667*************************************************975 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8    0.0003      0.36       4      30 ..      97     123 ..      96     124 .. 0.95
   2 ?    7.0   0.0    0.0045       5.4       8      25 ..     208     225 ..     207     226 .. 0.91
   3 ?    3.3   0.0     0.065        78       8      29 ..     245     266 ..     244     267 .. 0.94
   4 ?    2.4   0.1      0.13   1.5e+02       7      31 ..     316     340 ..     311     344 .. 0.69
   5 ?    1.9   0.1      0.18   2.2e+02       8      30 ..     351     373 ..     350     375 .. 0.90
   6 ?   -0.1   0.3      0.77   9.2e+02       7      30 ..     384     408 ..     383     409 .. 0.86
   7 ?   -2.9   0.6         6   7.2e+03      18      30 ..     518     530 ..     516     530 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0003
      TPR_10   4 slnNLanalrqrgrydeAealleeala 30 
                 +l+ La+++r+r  +++A +l+e+al+
  CCD22665.1  97 ALTSLAHLYRSRDMFQRAAELYERALQ 123
                 7999*********************97 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0045
      TPR_10   8 LanalrqrgrydeAeall 25 
                 L++++ ++g++++A++ +
  CCD22665.1 208 LGIIYKHQGKWNQALECF 225
                 9*************9976 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.065
      TPR_10   8 LanalrqrgrydeAealleeal 29 
                 L+ +l ++g++++A + +e++l
  CCD22665.1 245 LGSVLESMGEWTGAKEAYEHVL 266
                 999****************997 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.13
      TPR_10   7 NLanalrqrgrydeAealleealai 31 
                 +L++++  r++y++A + +++a+++
  CCD22665.1 316 HLGRVHMIRNDYTAAYDAFQQAVNR 340
                 5777777777777777777777654 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.18
      TPR_10   8 LanalrqrgrydeAealleeala 30 
                 ++++++q  +y +A++ + +a++
  CCD22665.1 351 IGVLYYQISQYRDALDAYTRAIR 373
                 6999**************99997 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.77
      TPR_10   7 NLanal.rqrgrydeAealleeala 30 
                 +L+ ++ +  +++++A++ +++a +
  CCD22665.1 384 DLGTLYeTCNNQLNDALDAYKQAAR 408
                 58888989999*********99965 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 6
      TPR_10  18 ydeAealleeala 30 
                  ++A++ +++al+
  CCD22665.1 518 QQQALQQQQQALQ 530
                 5889999999986 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   8.8   0.00044      0.53     125     239 ..      37     154 ..      18     161 .. 0.78
   2 ?   10.0   0.0    0.0003      0.36     120     248 ..     175     311 ..     165     314 .. 0.75
   3 ?   13.9   0.1   1.9e-05     0.023       7      71 ..     310     372 ..     301     376 .. 0.86
   4 ?    3.5   0.0      0.03        35     155     186 ..     389     420 ..     378     421 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00044
      TPR_15 125 dydriaellksleeeea...aeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkaraesdasLwgpl 220
                 +  + +++++++++++    a+  a  +l  a+l++  g+ d+A  +y   l+++p+s+++   l  l+  ++  + + el ++  ++    ++ w+ l
  CCD22665.1  37 AQGQAQAIIQQQQQQPLdpvAQATAETWLSIASLAETVGDADRAAMAYDATLQYNPQSTKALTSLAHLYRSRDMFQRAAELYERALQYNPDLSDVWATL 135
                 3344444555544333344599***************************************9988777766665555567777777788999999**** PP

      TPR_15 221 aaAlllLgrpkkALeylrk 239
                 +  +l+L + ++A + +++
  CCD22665.1 136 GHCYLMLDDLTRAYNSYQQ 154
                 *********9999877765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0003
      TPR_15 120 lerakdydriaellkslee.eeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkara....... 210
                 ++r + +d  +e ++++ e ++ +e+   ++++++ +y+ +g++++Al+++r  l+ +p+   l++  +W+ +  g+  e    + +w +++       
  CCD22665.1 175 YDRYGSLDYAEEAFAKVLElDPHFEKANEIYFRLGIIYKHQGKWNQALECFRYILNQPPA--PLQEWDIWFQL--GSVLE---SMGEWTGAKeayehvl 266
                 55566666667777776554999*************************************..9*******987..44443...4555555544455555 PP

      TPR_15 211 .......esdasLwgplaaAlllLgrpkkALeylrkqakenrkdp 248
                        +  ++L   ++   +   +p+kAL yl k ++  ++d+
  CCD22665.1 267 lqnehhaKVLQQLGCLYGMNNVSFYDPQKALGYLLKSLEVDSQDA 311
                 554444455566666777777888888888888888888777775 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.9e-05
      TPR_15   7 plnealklatllykqgdvkkAlevLkeaaqkaapskdteyWrtladLAwalqqedearkAyrqLl 71 
                 + ++ ++l ++++ ++d+ +A+ + ++ a +++ s++  +W + + L  +  q+++a +Ay++ +
  CCD22665.1 310 DATTWYHLGRVHMIRNDYTAAYDAFQQ-AVNRD-SRNPIFWCSIGVLYYQISQYRDALDAYTRAI 372
                 4456799******************65.55563.9**************************9865 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.03
      TPR_15 155 lyrqegqtdaAlrdyreAlalapdsselraal 186
                 +++ ++q ++Al +y++A +l+p++  +r++l
  CCD22665.1 389 YETCNNQLNDALDAYKQAARLDPENIHIRKRL 420
                 4555778899***************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      6048  (0.337331); expected 358.6 (0.02)
Passed bias filter:                     1197  (0.0667633); expected 358.6 (0.02)
Passed Vit filter:                       756  (0.0421663); expected 17.9 (0.001)
Passed Fwd filter:                       266  (0.0148363); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 4.62u 0.37s 00:00:04.99 Elapsed: 00:00:00.90
# Mc/sec: 3373.84
//
Query:       CCD22666.1  [L=575]
Description: hypothetical protein NDAI_0A05110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-26   93.5   8.1    1.1e-25   90.6   4.5    2.9  2  Med1           Mediator of RNA polymerase II transcription su
  ------ inclusion threshold ------
       0.26   11.1   2.7       0.37   10.5   1.1    2.0  2  Novirhabdo_Nv  Viral hemorrhagic septicemia virus non-virion 


Domain annotation for each model (and alignments):
>> Med1  Mediator of RNA polymerase II transcription subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   4.5   1.2e-29   1.1e-25       2     231 ..      12     229 ..      11     302 .. 0.72
   2 ?    1.6   0.3     0.013   1.1e+02     355     414 ..     322     380 ..     263     381 .. 0.74

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 1.2e-29
        Med1   2 kvlqlLqekvsgrqvsreglerLarqlgLetfwdennklsektqtLsIAgssfyLeIdf.eednkVkdVsLslagseaeqsgee..........reeAs 89 
                 ++++l++e+++g+ ++++++++L+++lgLe+f+d+ +    +t +Ls A+++++++Idf ++d+kVkdV+L la++  +    +          ++  +
  CCD22666.1  12 QMIELFKEYKPGV-ITIDNITKLCHTLGLESFIDDVD---ATTLRLSTASKIIVIDIDFnKSDGKVKDVKLVLASNFDNF---NyfnddkdrssTSTTK 103
                 589**********.*********************99...89*****************8888***********994422...124567777768999* PP

        Med1  90 eiLlrdLrltkkldeFaanLerLarlDklsgdpklncfealegleesLqklsqleskshwelekkdeeleelglcssvGkptmh.kkgrvGLsldYWve 187
                 +iLl++L+l+++l+ F++nL++L+ lD +s+  +++     ++  ++  +        +          +e+ l+++ G  +   + g+++L ++Y++e
  CCD22666.1 104 NILLNSLTLYQDLQVFHHNLQYLYLLDTFSQ-IDVDT---GASASNDVGTG-------Y----------SETSLSNNNGSINAAiTTGKLDL-FKYFTE 180
                 ******************************7.55553...44555555555.......2..........34556677888888899999999.999999 PP

        Med1 188 prrlldekek.kssslsgdeyelse.........kdsllenqekvwsiliecea 231
                  ++ l+++++ +s + +++++ +++         +      +  + +++ e ++
  CCD22666.1 181 LSHYLKQYFNdNSIDSEIKTNLNDKfgiyiiskdD-----AEVPIAKLYFEKSN 229
                 99999999984444444444333334566543320.....33333333333333 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.013
        Med1 355 deegkelekshsytfqitkdlpglgitvkelpFshPrqlpeiLpiLRqyallstLlrscf 414
                   + ++ +++ + + q+++d++++ i+++ +++++ ++l+ i +i+ +  ++ ++l ++f
  CCD22666.1 322 AYNFTNSPYQYDQKIQFMNDFTTNLIPITRFNINN-DNLELISEIFNWISWMTKILLTTF 380
                 444466678888999********************.*****9999999999999987766 PP

>> Novirhabdo_Nv  Viral hemorrhagic septicemia virus non-virion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.1   4.1e-05      0.37      26      73 ..      83     131 ..      73     139 .. 0.83
   2 ?   -2.4   0.0      0.42   3.8e+03      13      32 ..     313     332 ..     299     346 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.1e-05
  Novirhabdo_Nv  26 tfdpsnylnsdldrsdisatdflettlprilddlra.strlpylhvldm 73 
                    +fd  ny+n d drs  s+t+ +      + +dl+     l yl++ld 
     CCD22666.1  83 NFDNFNYFNDDKDRSSTSTTKNILLNSLTLYQDLQVfHHNLQYLYLLDT 131
                    79****************9987766666789999872467999999995 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.42
  Novirhabdo_Nv  13 splvlremityrltfdpsny 32 
                     p++l e ++y +t  p +y
     CCD22666.1 313 KPIILLESLAYNFTNSPYQY 332
                    68888888888888888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4017.67
//
Query:       CCD22667.1  [L=508]
Description: hypothetical protein NDAI_0A05120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-76  256.9   0.0      4e-76  256.4   0.0    1.2  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.4   0.0   2.3e-80     4e-76       2     305 ..      20     411 ..      19     413 .. 0.90

  Alignments for each domain:
  == domain 1  score: 256.4 bits;  conditional E-value: 2.3e-80
                    CCGTHHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHH.............................................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................. RF
  Hist_deacetyl   2 penpkRlsaileslaesvglldelelliqpseatkeellkvHskeYlell.............................................. 51 
                    p+n+ + s++++sl ++++ll+ + ++i+++ +++ee+ k+HskeY++++                                              
     CCD22667.1  20 PCNNFKKSQLTYSLLNAMSLLECFDHVITNPYCSQEEMMKFHSKEYINTImnprynnimpydegneskwnelnemakqwydlnnieapegrshsrl 115
                    6777788889*******9***99999********************************************************************** PP

                    ...........................................HCHHHHCHHT.TTHCCHHHCCTS........T....SSSSSTHCTTTCCHHHH CS
                    ...........................................xxxxxxxxxxxxxxxxxxxxxxx........x....xxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  52 ...........................................eslsnelkkkeeakekeleeias........k....lldddtpvspktlkaal 92 
                                                               e   n+  +ke+ +        +        k    +l++d+p+++++  +++
     CCD22667.1 116 alyerfkelsvetnrpshevsiptskkrsawealldesnstteE-PVNKRAEKENSN--------DnekemireKlkgyNLEGDCPIFSYLPVYCQ 202
                    *****************999999999998888888777555431.222222222222........0223344442445689*************** PP

                    HHHHHHHHHHHHHHTTSSSEEEETT.SS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-CC CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  93 lavgavleavdavlsgsvkaafvlv.rPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHryeg 187
                    + vga+l++++++     +++++++ ++++HHa +++asGFC++N++++ i++l++ +++kr+ ++D+D+HhG+G+++ f+++ +v+t+S H++e+
     CCD22667.1 203 VIVGATLSLAKHITAVANERTIAVNwDGGRHHALRNKASGFCYINDIVLLIQQLRS-NGYKRITYIDFDLHHGDGVQRSFQYSTSVQTISAHMFEP 297
                    **************8888999***********************************.89************************************* PP

                    TSTTSS--TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-G.E CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 188 ifyPgtgaledlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkvkkv 283
                    +f+P+tg+l++       ++++n+pl +g++d  + +++e++++p++++++P+++++++G D+l gd ++e++l+++g+ + + kl++++  + +v
     CCD22667.1 298 GFFPCTGSLKESK---MGKNIVNIPLLHGVDDMLMNEIVEKVMIPCVKRYDPEILVIQCGGDGLIGDGYAEWQLTIHGLVNNILKLLRIFPGC-PV 389
                    *********9993...4449***********************************************************************77.** PP

                    EEEE-S---HHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 284 vllleGGYnlealaravtavls 305
                    vll++GGYn++ ++r++t++++
     CCD22667.1 390 VLLGGGGYNETVMSRFYTYLTW 411
                    *****************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3625.42
//
Query:       CCD22668.1  [L=111]
Description: hypothetical protein NDAI_0A05130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-18   63.4   3.9    8.2e-09   34.4   0.1    3.5  3  EF-hand_1     EF hand
    1.1e-15   57.8   1.1    4.2e-07   30.3   0.1    2.1  2  EF-hand_7     EF-hand domain pair
      5e-14   51.0   3.0    2.7e-08   33.1   0.1    3.5  3  EF-hand_6     EF-hand domain
    5.4e-14   51.8   2.9    7.4e-08   32.1   0.1    3.1  3  EF-hand_8     EF-hand domain pair
    2.1e-09   36.4   1.1    8.6e-08   31.3   0.0    2.6  2  EF-hand_5     EF hand
    6.7e-05   23.1   0.1       0.14   12.5   0.0    2.4  2  EF-hand_9     EF-hand domain
     0.0036   17.6   0.5        2.4    8.5   0.1    2.2  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
     0.0081   16.5   0.4       0.15   12.4   0.0    2.2  2  RNA_pol_Rpb4  RNA polymerase Rpb4
  ------ inclusion threshold ------
      0.059   14.2   0.0          9    7.2   0.0    2.0  2  EF-hand_11    EF-hand domain
       0.12   11.9   0.1       0.13   11.9   0.1    1.1  1  DUF533        Protein of unknown function (DUF533)


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   7.5e-09   1.3e-05       1      28 [.      12      39 ..      12      40 .. 0.92
   2 !   34.4   0.1   4.6e-12   8.2e-09       1      28 [.      49      76 ..      49      77 .. 0.93
   3 ?    4.6   0.0     0.015        27      14      28 ..      97     111 .]      85     111 .] 0.89

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 7.5e-09
                HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkk 28
                e+ ++++e+D Dg+ +I+f+Ef++l+++
  CCD22668.1 12 EVTDLMNEVDIDGNHQIEFNEFISLMSR 39
                56789*********************86 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 4.6e-12
                HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkk 28
                el e+F++fDk+gdG+I+ +E+k +l++
  CCD22668.1 49 ELLEAFKVFDKNGDGHISADELKYVLNS 76
                688*********************9987 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.015
                 SSEEEHHHHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkellkk 28 
                 +G Id+++f +ll+k
  CCD22668.1  97 TGEIDIQQFASLLSK 111
                 699******999875 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1     3e-09   5.3e-06      38      70 ..       5      37 ..       1      38 [. 0.90
   2 !   30.3   0.1   2.3e-10   4.2e-07       2      67 ..      48     106 ..      47     110 .. 0.84

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3e-09
   EF-hand_7 38 gsklsdeelellfkefDtdkdGvisfdEFlkly 70
                g  +++ee+ +l++e+D d++++i f+EF  l+
  CCD22668.1  5 GLQPTEEEVTDLMNEVDIDGNHQIEFNEFISLM 37
                56679*************************998 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 2.3e-10
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkd.GvisfdEFl 67 
                 ++l eaFk +D++gdg+++ +el+ +l       + ++k +d e+++++ke+   +d G+i+ + F 
  CCD22668.1  48 QELLEAFKVFDKNGDGHISADELKYVLN------SLNEKWTDSEVDAMIKEV--GGDtGEIDIQQFA 106
                 7899********************8888......999999***********6..3333667766665 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1    0.0001      0.18       7      27 ..      18      38 ..      12      45 .. 0.86
   2 !   33.1   0.1   1.5e-11   2.7e-08       1      29 [.      49      76 ..      49      95 .. 0.93
   3 ?    5.2   0.0     0.013        23      13      27 ..      96     110 ..      94     111 .] 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0001
   EF-hand_6  7 klfDkdgdGkidaeElrkalr 27
                ++ D dg+ +i ++E++++++
  CCD22668.1 18 NEVDIDGNHQIEFNEFISLMS 38
                6789**************998 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 1.5e-11
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrkalrka 29
                el eaFk fDk+gdG+i+a+El+ +l+ +
  CCD22668.1 49 ELLEAFKVFDKNGDGHISADELKYVLN-S 76
                688**********************98.5 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.013
   EF-hand_6  13 gdGkidaeElrkalr 27 
                 ++G+id++++ ++l+
  CCD22668.1  96 DTGEIDIQQFASLLS 110
                 58*********9998 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.1   4.1e-11   7.4e-08      15      54 ..       2      39 ..       1      40 [. 0.93
   2 !   15.3   0.1   7.6e-06     0.014      24      48 ..      46      70 ..      45      77 .. 0.90
   3 !    8.5   0.0   0.00099       1.8       5      34 ..      65      92 ..      65      93 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 4.1e-11
   EF-hand_8 15 rilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54
                ++lgl+   +eeev++l++e+D+dg+  i f+EF+ l+ r
  CCD22668.1  2 NSLGLQ--PTEEEVTDLMNEVDIDGNHQIEFNEFISLMSR 39
                679***..*****************************977 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 7.6e-06
   EF-hand_8 24 seeevdilfrefDtdgdGkisfeEF 48
                se+e+ + f+ fD +gdG+is +E 
  CCD22668.1 46 SEQELLEAFKVFDKNGDGHISADEL 70
                78999999*************9997 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00099
   EF-hand_8  5 Itreelrrilrilglkkglseeevdilfre 34
                I+ +el+  l++l  k   +++evd++++e
  CCD22668.1 65 ISADELKYVLNSLNEK--WTDSEVDAMIKE 92
                899*****99998988..**********98 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.039        70       3      25 .]      15      37 ..      14      37 .. 0.83
   2 !   31.3   0.0   4.8e-11   8.6e-08       2      22 ..      52      71 ..      50      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.039
                HHHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5  3 dtFqaiDlNgDGkIskeELktlv 25
                d+ +++D +g  +I + E+  l+
  CCD22668.1 15 DLMNEVDIDGNHQIEFNEFISLM 37
                56789999999999999998775 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 4.8e-11
                HHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELk 22
                ++ F+ +D+NgDG+Is++ELk
  CCD22668.1 52 EA-FKVFDKNGDGHISADELK 71
                55.*****************7 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   7.6e-05      0.14      31      64 ..       7      39 ..       2      41 .. 0.93
   2 !    8.5   0.0    0.0014       2.5       3      59 ..      53     106 ..      52     111 .] 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.6e-05
   EF-hand_9 31 dpeeseLeelakelDPdgedasvdldtflrvmre 64
                +p+e e+ +l +e+D dg+  +++++ f   m++
  CCD22668.1  7 QPTEEEVTDLMNEVDIDGN-HQIEFNEFISLMSR 39
                79*****************.************86 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0014
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtfl 59 
                  F+v+D +  G +   +l+ +L    + + ++se++   ke+  d   +++d+  f 
  CCD22668.1  53 AFKVFDKNGDGHISADELKYVLNSLNE-KWTDSEVDAMIKEVGGDT--GEIDIQQFA 106
                 49********************99999.999999999999885444..467777766 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0025       4.5      83     111 ..       6      34 ..       2      36 .. 0.90
   2 !    8.5   0.1    0.0013       2.4      46      83 ..      40      77 ..      35      86 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0025
  SPARC_Ca_bdg  83 lvklehCikpflescDadkdkkislkEwc 111
                   l ++e+ ++ ++++ D d +++i+ +E++
    CCD22668.1   6 LQPTEEEVTDLMNEVDIDGNHQIEFNEFI 34 
                   67899999*******************97 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0013
  SPARC_Ca_bdg 46 eknlkeckepvawkFsklDtnsdkvlsksELaplrapl 83
                  +++++  ++++   F+ +D+n d+++s  EL+ + ++l
    CCD22668.1 40 QSKSNDSEQELLEAFKVFDKNGDGHISADELKYVLNSL 77
                  55666677777889*****************9987765 PP

>> RNA_pol_Rpb4  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.11     2e+02      34      60 ..      19      45 ..       2      61 .. 0.59
   2 !   12.4   0.0   8.2e-05      0.15      92     119 ..      66      93 ..      64      95 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.11
                  SHCHTCHHCHHHHHHHHHHHCTHHTTS CS
  RNA_pol_Rpb4 34 keevkgnlnkilkktleyltnkfsrlk 60
                  + +++gn++ ++++ ++ ++++ + ++
    CCD22668.1 19 EVDIDGNHQIEFNEFISLMSRQSKSND 45
                  345566666666666666666333333 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.2e-05
                   SHHHHHHHSTTGTTTSTSHHHHHHHHHH CS
  RNA_pol_Rpb4  92 savelktlieeleerfedeqleeiLdel 119
                   sa+elk + ++l+e+ +d++++++++e+
    CCD22668.1  66 SADELKYVLNSLNEKWTDSEVDAMIKEV 93 
                   89***********************997 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.018        32      54      85 ..       9      40 ..       6      47 .. 0.88
   2 ?    7.2   0.0     0.005         9      23      83 ..      51     110 ..      41     111 .] 0.86

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.018
                -HHHHHHHHHTS-B-TTS-EEHHHHHHHHCS- CS
  EF-hand_11 54 tdeqfdrlwselpvnakgrlkyqdflsklsie 85
                t+e+   l +e+ ++ + ++ +++f+s +s +
  CCD22668.1  9 TEEEVTDLMNEVDIDGNHQIEFNEFISLMSRQ 40
                7899999********************99976 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.005
                 HHHHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHHHHC CS
  EF-hand_11  23 vqefenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdflskls 83 
                  + f+ fd      +s +e++ + +   +  td + d + +e+  +  g +  q+f s ls
  CCD22668.1  51 LEAFKVFDKNGDGHISADELKYVLNSLNEKWTDSEVDAMIKEVGGD-TGEIDIQQFASLLS 110
                 56788999999999****************************9865.58888888888776 PP

>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     7e-05      0.13      65     115 ..      41      92 ..       7     108 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7e-05
      DUF533  65 eeeeekaelllrAm.iaAAkADGhideeErqrIlqeleelgldaeekalled 115
                 +++++ ++ ll+A  +   + DGhi+++E + +l++l+e+ +d+e  a++++
  CCD22668.1  41 SKSNDSEQELLEAFkVFDKNGDGHISADELKYVLNSLNEKWTDSEVDAMIKE 92 
                 377788888888886777889*******************999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 887.34
//
Query:       CCD22669.1  [L=592]
Description: hypothetical protein NDAI_0A05140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-19   68.7   3.5    6.3e-19   68.7   3.5    5.0  4  AIM3      Altered inheritance of mitochondria protein 3
      0.009   16.7  17.0      0.009   16.7  17.0    5.9  4  DUF3824   Domain of unknwon function (DUF3824)


Domain annotation for each model (and alignments):
>> AIM3  Altered inheritance of mitochondria protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   3.5   7.1e-23   6.3e-19       1      86 [.       1      80 [.       1      82 [. 0.79
   2 ?  -24.3  26.1         2   1.8e+04      59      86 ..     248     275 ..     105     277 .. 0.69
   3 ?    2.6   1.5      0.03   2.7e+02      69      85 ..     304     320 ..     286     323 .. 0.73
   4 ?   -3.2   0.7         2   1.8e+04      68      81 ..     544     559 ..     532     579 .. 0.57

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 7.1e-23
        AIM3  1 kdsiksGlktagKygykGtksvaKsGyqagKkhykkskekreerdgkddsdeereededyd.tstsleslrdprsFppPPlkpgqaq 86
                +ds+ksGlk+agK+gy+Gtks+a+s+ +a++k+++++++  e +        ++e+++ ++  s++ ++l++++sFppPPl+++q++
  CCD22669.1  1 MDSLKSGLKSAGKFGYQGTKSLAHSAKKASHKKHDNKRDSAEFE-------RRYEHSHPHQsLSPTSSTLPNAASFPPPPLQREQMD 80
                8*****************************98877666333332.......333333333347788899***************987 PP

  == domain 2  score: -24.3 bits;  conditional E-value: 2
        AIM3  59 dydtstsleslrdprsFppPPlkpgqaq 86 
                 ++  ++++ + +  ++ pp Pl+++ +q
  CCD22669.1 248 QQPMQQQPMQQQPMQQQPPQPLNSDVNQ 275
                 1222222222233344455577776666 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.03
        AIM3  69 lrdprsFppPPlkpgqa 85 
                   + +++ppPP++++ a
  CCD22669.1 304 PINISNLPPPPVHKERA 320
                 357899******99875 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 2
        AIM3  68 slrdprsFppP..Plk 81 
                 + +++++  pP  Plk
  CCD22669.1 544 KSNNTKKHIPPkiPLK 559
                 3344444444444443 PP

>> DUF3824  Domain of unknwon function (DUF3824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7  17.0     1e-06     0.009      32     144 ..      22     130 ..       5     135 .. 0.64
   2 ?  -54.4  75.7         2   1.8e+04      54     137 ..     168     251 ..     117     362 .. 0.69
   3 ?   -6.2  10.9         2   1.8e+04      51     119 ..     417     495 ..     396     519 .. 0.47
   4 ?   -1.8   0.3       0.5   4.4e+03     107     131 ..     534     555 ..     510     581 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1e-06
     DUF3824  32 rkkaerererrreede.ardsyeeeyepepyspsPeassqPsasqesyyPetnyFPPPPgstpkpsveeepeaaiapynPadYpppPgaappeqeyqy. 128
                   ++ +++++++++++  ++ +e++ye +++    ++s +P++s+    P++ +FPPPP + ++   ++ ++++++p + ++Y +     p++ ++ + 
  CCD22669.1  22 LAHSAKKASHKKHDNKrDSAEFERRYEHSHP----HQSLSPTSST---LPNAASFPPPPLQREQMDSRHYTNTTMNP-QAQNYYSRSTNIPQMGTSPQs 112
                 3445566666777776344789999944444....4567999999...5************7775555555555555.445577764444444333333 PP

     DUF3824 129 ..pPepgedeyaprprra 144
                   p+++ ++ y+++ +++
  CCD22669.1 113 vsPSQYSQNMYVNDNQQQ 130
                 436699999999988765 PP

  == domain 2  score: -54.4 bits;  conditional E-value: 2
     DUF3824  54 eeyepepyspsPeassqPsasqesyy..PetnyFPPPPgstpkpsveeepeaaiapynPadYpppPgaappeqeyqy..pPepgedey 137
                 + y p++ +psP++ ++P+++  + y   +t++ P P ++   +++++  +++ +p  P+ + +p   ++p+q++    +P  ++++ 
  CCD22669.1 168 SVYPPQSLGPSPQQQYAPNNQYIQPYqqSNTQQSPLPIQNGY-TYNTPVLSNQANP-SPQVFQQP-IQQQPMQQQPMqqQP-MQQQPM 251
                 446667777777777777666555331234444555555422.2233333333333.33333322.222222222221122.111111 PP

  == domain 3  score: -6.2 bits;  conditional E-value: 2
     DUF3824  51 syeeeyepepys.psPe.assqPsasqes....yy....PetnyFPPPPgstpk..psveeepeaaiapynPadYpppPga 119
                 +y+ ++ p+p + +s++   ++ ++s+++    yy    P   + PP P ++++   +++ +++ ++   n   Y ++ + 
  CCD22669.1 417 YYQGTR-PNPIMrNSAMnGDYTVTQSNSNssnsYYqgtmPT-LSTPPNPMAAQEniRNNTITNNGTYDTSNETSYINQSQM 495
                 444444.4443303333222222222222344588444333.344666666555322222233333334666667777333 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.5
     DUF3824 107 pynPadYpppPgaappeqeyqypPe 131
                 p  Pa+++ + + +  +++++ pP+
  CCD22669.1 534 P--PANFATN-EKKSNNTKKHIPPK 555
                 3..5555555.22222233333442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1174  (0.0654805); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.43
# Mc/sec: 4108.88
//
Query:       CCD22670.1  [L=199]
Description: hypothetical protein NDAI_0A05150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-13   50.6   0.4    1.1e-06   28.8   0.2    2.2  2  Fe-S_biosyn  Iron-sulphur cluster biosynthesis


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.1e-08   0.00038       3      60 ..      61     110 ..      59     134 .. 0.79
   2 !   28.8   0.2   6.3e-11   1.1e-06      58     110 ..     137     188 ..     110     189 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.1e-08
                  EEE-HHHHHHHHHHHHCTTECEEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkkelrLdvddgggpyskggCsiggkyslvlvdeedeeyde 60 
                  + +te+A e+l++  +++k+ l + v+ gg       C+ g++y+l+l++    + + 
   CCD22670.1  61 MSITERACERLNEIYKDSKEILKINVESGG-------CH-GFQYNLKLIPDSVGSSKN 110
                  789***********9998876999999998.......**.*********987643333 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 6.3e-11
                  TEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEEETCCEEEEEEEE CS
  Fe-S_biosyn  58 ydevlesnggkvyvksyslvfldeglvldfvedlgtlgLksdngilddnvglg 110
                     vl ++  kv+++++sl  l ++++l ++++l ++ +k +ng++++++g+g
   CCD22670.1 137 IIYVLPKDRAKVMIDEKSLKIL-NNTTLTYTTELIGSTFKITNGNMKSTCGCG 188
                  5567889999************.9****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1541.95
//
Query:       CCD22671.1  [L=311]
Description: hypothetical protein NDAI_0A05160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-55  187.3   0.0    3.3e-55  187.1   0.0    1.1  1  ThiF             ThiF family
     0.0045   17.0   0.1      0.011   15.7   0.0    1.8  2  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.035   14.7   0.6       0.18   12.4   0.2    2.4  2  PglD_N           PglD N-terminal domain
      0.074   13.3   0.0       0.38   11.0   0.0    2.3  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.085   13.4   0.0       0.19   12.3   0.0    1.6  1  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
       0.11   11.6   0.0       0.19   10.9   0.0    1.4  1  Tubulin_2        Tubulin like


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.1   0.0   1.1e-58   3.3e-55      18     226 ..       2     288 ..       1     306 [. 0.90

  Alignments for each domain:
  == domain 1  score: 187.1 bits;  conditional E-value: 1.1e-58
                 TSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-T.....TSEEEEEES-CCG.CCS-HHHHTT- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxx.xxxxxxxxxxx RF
        ThiF  18 dskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinp.....dveveavteritd.etvleellesv 110
                 d kvl++GaGglG+e+lknL ++ v+++++vD+D+ielsNlnRqflf+++diGk+K+ +aa+ ++e        +v+v ++++++t+      e+++++
  CCD22671.1   2 DLKVLILGAGGLGCEILKNLTMMQVKEIHIVDMDTIELSNLNRQFLFSDDDIGKSKSITAAKYINEEHHykkrrGVNVIPYHQDLTTfP---IEFFKQF 97 
                 579*************************************************************987642222268*********9844...59***** PP

                 SEEEEESSSHHHHHHHHHHHHHHT........-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH..................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................... RF
        ThiF 111 DlVvdalDniearrlvnracvkkg........iplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct..................... 180
                 D+V+ +lD+i  rr +n++ ++          ipli++gt+gf+g+v +iipg t+c eC+   +t  +++++vp+ct                     
  CCD22671.1  98 DFVISGLDSIIPRRFINEKLIEITretgfetcIPLIDGGTEGFKGHVKTIIPGITACWECSI--DTLPTSQDTVPMCTiannprslehiieyviskrse 194
                 *********************88788999999*****************************5..79********************************* PP

                 ..............................................HHHCT.E-B-HHHHHHHHHHHHHHHHHHHTTBCG.GGCCEEEECCTTT CS
                 ..............................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        ThiF 181 ..............................................siagn.ipaiatttavvaglaalellkllsgkek.lenslltqvdlle 226
                                                               +i ++ ipa+++t+a++a ++++e+l++ s   + +e+  +t ++++e
  CCD22671.1 195 nemeegqkgeieessevvidtilkkcyerarmfnidtirlnkeyllGILKEiIPAVSSTNAMIAAACCNEMLRIYSDMIDlNEDGNFTIINGAE 288
                 *******************************************99999999***********************94433303444555555555 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.8e-06     0.011      13      54 ..       3      44 ..       1      67 [. 0.85
   2 ?   -3.3   0.0       2.9   8.6e+03      79      93 ..     246     260 ..     221     273 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.8e-06
                  -EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHH CS
  Shikimate_DH 13 kkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelae 54
                   kvl++GaG ++ +++k+L   +vk++ ++  +    ++l +
    CCD22671.1  3 LKVLILGAGGLGCEILKNLTMMQVKEIHIVDMDTIELSNLNR 44
                  69***************************9866666655555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.9
                   EEE-SSSSS-SB-HH CS
  Shikimate_DH  79 visataseepileke 93 
                   +i a++s+++++ ++
    CCD22671.1 246 IIPAVSSTNAMIAAA 260
                   455555555555554 PP

>> PglD_N  PglD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   6.1e-05      0.18       1      34 [.       4      36 ..       4      74 .. 0.75
   2 ?   -0.7   0.0       0.8   2.4e+03      11      28 ..     209     225 ..     208     267 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.1e-05
      PglD_N  1 kivIiGaGGhgkvvadiieangeyeiigflDdnk 34
                k++I+GaGG g ++++ +  ++  ++i ++D + 
  CCD22671.1  4 KVLILGAGGLGCEILKNLTMMQ-VKEIHIVDMDT 36
                799***************9999.99999999764 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.8
      PglD_N  11 gkvvadiieangeyeiig 28 
                 + vv+d+i ++  ye + 
  CCD22671.1 209 SEVVIDTILKKC-YERAR 225
                 578999998877.66543 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00013      0.38       1      45 [.       5      55 ..       5     128 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                     EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHH........T CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaaka........l 45
                     vli+GaG+ G  +++ l   +    ei+++d +  +l +l  +         +
       CCD22671.1  5 VLILGAGGLGCEILKNLTMMQVK--EIHIVDMDTIELSNLNRQFlfsdddigK 55
                     89*****************9876..9*******99999887766666544440 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.4e-05      0.19       1      31 [.       4      35 ..       4      46 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.4e-05
                EEEEECSSHHHHHHHHHHHHTT.SEEEEEESS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg.kkVtvvers 31
                kv+++G+G +g+E  ++l+ ++ k++++v++ 
  CCD22671.1  4 KVLILGAGGLGCEILKNLTMMQvKEIHIVDMD 35
                79******************996788998875 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.4e-05      0.19       1      65 [.       6      73 ..       6      89 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.4e-05
   Tubulin_2  1 lviGLGGtGgkvlaelrrrlreel.......gslelpdkvq..FlyiDtdeneknrlkdatdetaekageslks 65
                l+ G GG G+++l++l  + ++e+           ++ ++   Fl+ D d  + + +   t++++ +++++ k+
  CCD22671.1  6 LILGAGGLGCEILKNLTMMQVKEIhivdmdtI---ELSNLNrqFLFSDDDIGKSKSI---TAAKYINEEHHYKK 73
                789*********************99986532...3333333399999888888655...45555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2328.47
//
Query:       CCD22672.1  [L=188]
Description: hypothetical protein NDAI_0A05170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-78  260.8   0.2    4.5e-78  260.7   0.2    1.0  1  Pho88     Phosphate transport (Pho88)
  ------ inclusion threshold ------
      0.086   12.0   0.4       0.11   11.6   0.4    1.1  1  ArsP_1    Predicted permease


Domain annotation for each model (and alignments):
>> Pho88  Phosphate transport (Pho88)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.7   0.2     5e-82   4.5e-78       1     182 []       1     184 [.       1     184 [. 0.97

  Alignments for each domain:
  == domain 1  score: 260.7 bits;  conditional E-value: 5e-82
       Pho88   1 mnpqvtnlviilvlmqvskkidfedpevllyvRilYvvsqliillvylyikskikkknDlttlkyvepasplskeeeklvttTvkdYDlaelkkllksi 99 
                 mnpq+tn++i+lv+mq+s+++d+edp++++yvR++Y++s li +++y++ k++i +knDltt+k+v+p++ + +eeekl++tT++dYDl++++ ++ksi
  CCD22672.1   1 MNPQLTNIIIMLVMMQISRRLDMEDPTIIFYVRTFYCSSILISWIIYQLAKRSILAKNDLTTIKFVQPKNVMMAEEEKLQVTTIRDYDLKDVNGSIKSI 99 
                 9************************************************************************************************** PP

       Pho88 100 lmgvammafmhlymkytnPLllQsimplknllesnlvkihllgkpaegdLkRPFkaaagllgaa...eaktdkksiekaekagkgg 182
                 ++gvamm+fmh+ym+ytnPL++Q i+p+k++lesn+vkihl+gkpa+gdLkRPFk + +l+g     ++ktdkks+++ae+ag+gg
  CCD22672.1 100 YTGVAMMGFMHFYMGYTNPLFMQIISPVKGALESNEVKIHLFGKPATGDLKRPFK-SGSLFGVPtgnNPKTDKKSVDEAERAGHGG 184
                 *******************************************************.89999544566***************9875 PP

>> ArsP_1  Predicted permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   1.2e-05      0.11     106     196 ..      17     113 ..       3     123 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.2e-05
                 xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      ArsP_1 106 illgwql....lvarivlalivaiviglvleylfkeeelekaarevaeaglek.....ltlkpklealkafaknevkewlelgkyLiiGvaiagviqaf 195
                 i++++++    +++++      +i+i+++++ l k++ l+k + ++ +  ++k     ++ k +      + + ++k+   + k +  Gva+ g+++++
  CCD22672.1  17 ISRRLDMedptIIFYVRTFYCSSILISWIIYQLAKRSILAKNDLTTIKFVQPKnvmmaEEEKLQ---VTTIRDYDLKDVNGSIKSIYTGVAMMGFMHFY 112
                 34444442222344444445679*********************99887777777533333333...3459**************************99 PP

                 x RF
      ArsP_1 196 l 196
                 +
  CCD22672.1 113 M 113
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1458.00
//
Query:       CCD22673.1  [L=409]
Description: hypothetical protein NDAI_0A05180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-16   58.3   4.9    7.6e-16   58.3   4.9    2.1  2  HMG_box    HMG (high mobility group) box
    4.3e-09   36.8   1.7    8.6e-09   35.9   1.7    1.5  1  HMG_box_2  HMG-box domain


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   4.9   8.5e-20   7.6e-16       1      69 []      17      90 ..      17      90 .. 0.92
   2 ?   -4.0   0.0         2   1.8e+04      14      25 ..     114     125 ..     113     126 .. 0.82

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 8.5e-20
                --SS--HHHHHHHHHHHHHHHHSTTS-.....HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  1 pkRplsafflfskeqraklkaenPelk.....naeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69
                ++Rp +af+lf+++ +++l    +++      n+eisk+lg kWk+ +e+e++ + ++a++ek+++ k++p+yk
  CCD22673.1 17 IPRPKNAFILFRQHYHKELIDDWSKNGvhiphNSEISKILGHKWKNITEKEREYWSDMAKEEKKQHGKKYPQYK 90
                68******************998876333445*****************************************8 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2
                 HHHHHHHHHSTT CS
     HMG_box  14 eqraklkaenPe 25 
                 ++++k  a nP+
  CCD22673.1 114 DEHEKCIANNPN 125
                 678999999997 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   1.7   9.6e-13   8.6e-09       6      72 ..      19      89 ..      14      90 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 9.6e-13
                SS--HHHHHHHTTHHHHHHH....T---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS-- CS
   HMG_box_2  6 aarnAYalfvqemipelkrk....GnpviglaevsklcsekWkalseeeKekYeekAkedkkrydrealty 72
                +++nA++lf q   +el       G   +  +e+sk ++ kWk++ e+e+e + ++Ake kk+  +  ++y
  CCD22673.1 19 RPKNAFILFRQHYHKELIDDwsknGVHIPHNSEISKILGHKWKNITEKEREYWSDMAKEEKKQHGKKYPQY 89
                6789***99876665554444444999***********************************998876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1299  (0.0724525); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3219.38
//
Query:       CCD22674.1  [L=355]
Description: hypothetical protein NDAI_0A05190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-47  159.5   1.9    9.2e-47  158.9   1.9    1.3  1  Vac_ImportDeg  Vacuolar import and degradation protein


Domain annotation for each model (and alignments):
>> Vac_ImportDeg  Vacuolar import and degradation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.9   1.9   5.1e-51   9.2e-47       1     161 [.     138     339 ..     138     340 .. 0.93

  Alignments for each domain:
  == domain 1  score: 158.9 bits;  conditional E-value: 5.1e-51
  Vac_ImportDeg   1 flrpgakfkGeqqsgkkkyevkvelktvdle.......eslltGfleikglteekpeittffegeiidek.ysfltk.......kkkwkaseetDl 81 
                    fl+pg++f+G q sg+kky+++v+l++++l+       ++++ G+++i glt ++++++t+feg+++ ++ ++fl++       ++++   +e D+
     CCD22674.1 138 FLKPGMEFVGFQVSGYKKYTIEVNLHNMELPcskhvspNPHIYGIITIIGLTGHHQRLSTYFEGFVCGNErFGFLSSswpqdrdHSDFFNGDESDI 233
                    79*****************************************************************9867***********99999********* PP

  Vac_ImportDeg  82 ehWkkleafkkllak..........................dlenkelifmrwkekflvpdervksiegasfeGfYYivldqstgsieGlYyhkks 151
                    ++W+kl++f+k+++                           +  ++++ifm+wkekf + d+   si+gas+eGfYYiv+d+ +g+ieG++y++  
     CCD22674.1 234 AYWSKLKPFEKVFSPqhlwlytdydkdlrhsfrkltkkycdKELRERYIFMKWKEKFYITDTVEYSINGASYEGFYYIVHDRLMGTIEGYFYEEGG 329
                    ***********998899**999888888777776666555545555************************************************** PP

  Vac_ImportDeg 152 ekfqqLeLkp 161
                    ++fq+LeL+p
     CCD22674.1 330 QRFQHLELQP 339
                    ********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       970  (0.0541023); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2580.46
//
Query:       CCD22675.1  [L=135]
Description: hypothetical protein NDAI_0A05200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-05   23.3   0.3    0.00013   21.8   0.3    1.8  1  UPF0139   Uncharacterised protein family (UPF0139)


Domain annotation for each model (and alignments):
>> UPF0139  Uncharacterised protein family (UPF0139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.3   7.3e-09   0.00013      32      91 ..      33     104 ..       4     110 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 7.3e-09
     UPF0139  32 nllgmifsllglmlklkwcaWvalvcslisfanskssd.dlkqilssfm...........lsvsalvmsYlq 91 
                 +l+   + +++++l+ k  aW+al+ ++ ++ n+  ++ ++ +                 +s+++l++ Yl+
  CCD22675.1  33 GLVNQSMPMIAMFLRNKFIAWFALIQCIHYYLNTDEEEvEKNKTKENASpldqsplikvlMSTVGLITCYLN 104
                 555555789************************988885444443333344566666676999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1112.03
//
Query:       CCD22676.1  [L=154]
Description: hypothetical protein NDAI_0A05210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-22   77.1   0.0    9.6e-22   76.8   0.0    1.1  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    3.5e-19   68.9   0.0    4.6e-19   68.5   0.0    1.1  1  MafB19-deam      MafB19-like deaminase
    0.00094   19.3   0.0     0.0022   18.1   0.0    1.6  2  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4
     0.0017   18.4   0.0      0.043   13.9   0.0    2.0  2  NAD1             Novel AID APOBEC clade 1
     0.0029   17.7   0.2     0.0057   16.7   0.1    1.5  2  Bd3614-deam      Bd3614-like deaminase
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.059   13.4   0.0    1.8  2  APOBEC2          APOBEC2
       0.02   15.0   0.6        6.1    7.1   0.1    2.2  2  APOBEC4          APOBEC4
      0.059   13.3   0.1       0.24   11.3   0.1    1.8  1  APOBEC_N         APOBEC-like N-terminal domain
      0.095   12.8   0.0       0.21   11.7   0.0    1.5  2  NAD2             Novel AID APOBEC clade 2
       0.16   11.9   0.0       0.28   11.1   0.0    1.5  1  APOBEC4_like     APOBEC4-like -AID/APOBEC-deaminase


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   5.4e-25   9.6e-22       2     100 ..       5     105 ..       4     106 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 5.4e-25
                      HHHHHHHHHHHHHHHHHHTTTSCSEEEEEEE..TTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHHTSSCETTEEEEEEE--BHHHHHHHHHHT CS
  dCMP_cyt_deam_1   2 ekdekllelalkaakeaqkcsnfkVGavivk..ngeiistgyngepaggsktiHAEvnAilkaaknggsklegatlyvtlePCsmCakaiiqsg 93 
                      ++d+k +++a+++a + +++  +++G ++++  +g ++++g+n+++++gs+t+H E++ + ++++  g   +++t+y+tl+PC mC+ aii  g
       CCD22676.1   5 QWDKKGMDIAYEEAAKGYAEGGVPIGGCLINneDGTVLGRGHNMRFQKGSPTLHGEISTLENCGRLAGKVYKNTTMYTTLSPCDMCTGAIIMYG 98 
                      799**********************9888887999*******************************5446678********************* PP

                      -SEEEEE CS
  dCMP_cyt_deam_1  94 ikkvvvg 100
                      i ++vvg
       CCD22676.1  99 IPRCVVG 105
                      *****97 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   2.6e-22   4.6e-19       5     136 ..       9     143 ..       5     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 2.6e-22
  MafB19-deam   5 kafrkalaevekatkikedkiga..vivkdkkviargsnekelnakataHaEiaalqqAakklkskrlddatlyvtlepCdmCagaivqaglkklvyg 100
                  k +  a++e+ k++  ++++ig   +  +d+ v++rg+n + ++ ++t H+Ei  l+     l++k  +++t+y+tl pCdmC gai+  g+++ v g
   CCD22676.1   9 KGMDIAYEEAAKGYAEGGVPIGGclINNEDGTVLGRGHNMRFQKGSPTLHGEISTLENC-GRLAGKVYKNTTMYTTLSPCDMCTGAIIMYGIPRCVVG 105
                  55778999*************98666679***************************986.7778888***************************9999 PP

  MafB19-deam 101 ag.npkslnkLkvkekngrvelv...eddckeilkgffkk 136
                   + n ks  + +++e n +   v   ++ ck i+k+f+++
   CCD22676.1 106 ENvNFKSPGEKHLVERNVEL--VileDERCKSIMKKFIEE 143
                  77234444444444555444..4466889********986 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.2e-06    0.0022      18      61 ..      52      95 ..      33      98 .. 0.79
   2 ?   -2.4   0.0       2.8     5e+03      55      68 ..     132     145 ..     121     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.2e-06
       SNAD4 18 knkke.haEllflekikseldpsqeyrvtwylswsPCaeCaekia 61
                k + + h E+  le++  +l  ++  + t+y++ sPC  C+ +i+
  CCD22676.1 52 KGSPTlHGEISTLENC-GRLAGKVYKNTTMYTTLSPCDMCTGAII 95
                223348**********.889999999**************99886 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.8
       SNAD4  55 eCaekiaeflaehp 68 
                 +C + + +f++e+p
  CCD22676.1 132 RCKSIMKKFIEERP 145
                 58888888888776 PP

>> NAD1  Novel AID APOBEC clade 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.4e-05     0.043      46      89 ..      54      94 ..      32      97 .. 0.69
   2 ?    2.6   0.0     0.073   1.3e+02     121     149 ..     116     144 ..     109     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
        NAD1 46 eskcHaEllflnkikslklldpsqkykvtwylswSPCseCaskl 89
                + + H E+  l+++  l     +   + t+y++ SPC+ C+  +
  CCD22676.1 54 SPTLHGEISTLENCGRL---AGKVYKNTTMYTTLSPCDMCTGAI 94
                34459999998888444...45788899************8776 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.073
        NAD1 121 rsLasagvklsimkyeefeycwetfVene 149
                 + L +++v+l i++ e ++ + ++f+e++
  CCD22676.1 116 KHLVERNVELVILEDERCKSIMKKFIEER 144
                 6899999*******************977 PP

>> Bd3614-deam  Bd3614-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.2   2.2e+03      14      40 ..      34      62 ..      32      67 .. 0.66
   2 !   16.7   0.1   3.2e-06    0.0057      57      99 ..      58      99 ..      42     126 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.2
  Bd3614-deam 14 lvsdqGelldaavntn..aenkvLHAEvn 40
                 + +++G++l  + n     +  +LH E+ 
   CCD22676.1 34 INNEDGTVLGRGHNMRfqKGSPTLHGEIS 62
                 45677999888888751145568888875 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 3.2e-06
  Bd3614-deam 57 ddeiadrdgdgeeerrpleegarllvtlqcCkmCAalvvaaad 99
                   ei+  +  g  ++  + ++++++ tl +C mC + ++ ++ 
   CCD22676.1 58 HGEISTLENCGRLAG-KVYKNTTMYTTLSPCDMCTGAIIMYGI 99
                 555555555565554.567899**************9998776 PP

>> APOBEC2  APOBEC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.3e-05     0.059      44      89 ..      51      94 ..      33      98 .. 0.76
   2 ?    0.1   0.0      0.41   7.3e+02     121     149 ..     116     144 ..     108     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.3e-05
     APOBEC2 44 enkekkcHaEllflskvkkkkleekkeykvtwyvswsPCaeCaeev 89
                ++ +++ H E+  l+++    l  k   + t+y++ sPC  C+  +
  CCD22676.1 51 QKGSPTLHGEISTLENCGR--LAGKVYKNTTMYTTLSPCDMCTGAI 94
                333566799*999999998..5555555789***********9876 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.41
     APOBEC2 121 rsLkeagaqvkiMkykdfeecwekFVdne 149
                 ++L e+ +++ i++ +  +++ +kF++++
  CCD22676.1 116 KHLVERNVELVILEDERCKSIMKKFIEER 144
                 67889999999999999999999999875 PP

>> APOBEC4  APOBEC4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0034       6.1       2      20 ..      79      97 ..      78     104 .. 0.90
   2 ?    6.4   0.0    0.0055       9.9      47      74 .]     114     141 ..     107     141 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0034
     APOBEC4  2 tlylsysPCneCaekileF 20
                t+y + sPC  C  +i+ +
  CCD22676.1 79 TMYTTLSPCDMCTGAIIMY 97
                89***********999865 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0055
     APOBEC4  47 gLrkLvekgvtlkvlsiedylyllrtfv 74 
                 g ++Lve +v+l +l++e  ++++++f+
  CCD22676.1 114 GEKHLVERNVELVILEDERCKSIMKKFI 141
                 5589*********************997 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00013      0.24      36      92 ..      45      94 ..      30     145 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
                EE.EEEE-..SSTBCHHHHHHHHHHHHT--.TTEEEEEEEEESS-S-HH....HHHHH CS
    APOBEC_N 36 Gv.LrnqsgaaaskHaEelflediedqelrepkkkyeitlYvswsPChessdeCaekl 92
                G+ +r q+g+    H E   le+  +  l   k   + t+Y+++sPC      C  ++
  CCD22676.1 45 GHnMRFQKGS-PTLHGEISTLEN--CGRLA-GKVYKNTTMYTTLSPCDM----CTGAI 94
                4444445555.478888887775..33555.4667789*********99....54444 PP

>> NAD2  Novel AID APOBEC clade 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00012      0.21      49      95 ..      52      96 ..      32     102 .. 0.74
   2 ?   -2.4   0.0       2.5   4.5e+03     127     152 ..     118     143 ..     113     148 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
        NAD2 49 qkesklhaellfLskfvlrqlelaqeykvtwyvsWsPCpeCaaevae 95
                + +  lh e++ L+     +l  +   + t+y++ sPC  C++ ++ 
  CCD22676.1 52 KGSPTLHGEISTLENCG--RLAGKVYKNTTMYTTLSPCDMCTGAIIM 96
                237789*****999984..67666655789***********998875 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.5
        NAD2 127 LrqagarvkimdyeefekCWekfvyn 152
                 L++  +++ i+++e  +   +kf+++
  CCD22676.1 118 LVERNVELVILEDERCKSIMKKFIEE 143
                 66666777777777777777777765 PP

>> APOBEC4_like  APOBEC4-like -AID/APOBEC-deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00016      0.28      32      76 ..      53      97 ..      39     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
  APOBEC4_like 32 ksklehaevnflekirserkkvsctivwylsispCaecskrllef 76
                   s + h e+  le++     kv  + ++y   spC  c ++++ +
    CCD22676.1 53 GSPTLHGEISTLENCGRLAGKVYKNTTMYTTLSPCDMCTGAIIMY 97
                  456789*********99999*********************9955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1254.89
//
Query:       CCD22677.1  [L=325]
Description: hypothetical protein NDAI_0A05220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-10   39.6   8.3    2.9e-09   36.9   5.7    2.9  2  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.023   4.1e+02      11      28 ..      29      46 ..      22      61 .. 0.68
   2 !   36.9   5.7   1.6e-13   2.9e-09       2      63 .]      93     174 ..      92     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.023
                TG-HHHHHHHHHHHHHHH CS
        DnaJ 11 dasedeIkkaYrklalky 28
                +++++ +k+ Yr la  +
  CCD22677.1 29 SSQSSPLKQHYRSLASVV 46
                4556669*******9866 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 1.6e-13
                 HHHHHTSSTTG-...HHHHHHHHHHHHHHHSTTTS.............CCHHHHHH..........HHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   2 yYeiLgvskdas...edeIkkaYrklalkyHPDkn.............pkdpeaee..........kFkeineAyevLsdpekRkqYD 63 
                 +Yei ++s++ +   ++ +kk+Y+  ++ yHPD +             +                 +Fk i+ Ay+vL+dp+k++qYD
  CCD22677.1  93 PYEIFNISNSQQhinKKSLKKKYHYYVKLYHPDVStkvnvltkrkgkgN------StvidmeeklkRFKLISFAYSVLNDPNKKRQYD 174
                 7******99954333888***************5544557766555431......03333444555*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2619.41
//
Query:       CCD22678.1  [L=236]
Description: hypothetical protein NDAI_0A05230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.078   13.3   0.0        0.3   11.5   0.0    1.9  1  CM_2      Chorismate mutase type II


Domain annotation for each model (and alignments):
>> CM_2  Chorismate mutase type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.7e-05       0.3      10      67 ..     128     217 ..     123     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHCTSG.................SS-HHHHHHHHHHHHHHH...............S-HHHHHHHHHHHH CS
        CM_2  10 eileLLaeRaelakevgeyKkeeglp.................vydpeReaevlerleega...............ldeeaierifreii 67 
                 e l+ L++R  + k v+e+K +++ p                 + + + e+++l rl+++a               + +e++ +i++ei+
  CCD22678.1 128 ECLQSLSRRIHFGKFVAEAKFQSDIPlytkliqnkdvegimrnITNSAVEEKILLRLTKKAevygvdptsedserrITPEYLVKIYKEIV 217
                 567899**************99999999999999999999999999999**********4455555666677778899*********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1934.80
//
Query:       CCD22679.1  [L=301]
Description: hypothetical protein NDAI_0A05240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-57  191.7   2.0      2e-20   72.5   0.1    3.0  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.1   1.3e-23   2.3e-19       4      94 ..      20     104 ..      17     107 .. 0.95
   2 !   48.6   0.0   3.1e-17   5.6e-13       3      89 ..     114     197 ..     112     203 .. 0.95
   3 !   72.5   0.1   1.1e-24     2e-20       2      93 ..     210     300 ..     209     301 .] 0.94

  Alignments for each domain:
  == domain 1  score: 69.1 bits;  conditional E-value: 1.3e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +v+k+llaG ++g++++lv +P+d+ K+rlqt+ ++++      +++v+ +++k+eG rg+y+G l  l++v    +l+f+++e +kr++ 
  CCD22679.1  20 RVIKDLLAGTAGGIAQVLVGQPFDTTKVRLQTATTRTN------AMEVVINLLKNEGPRGFYKGTLTPLVGVGACVSLQFGVNEAMKRFFH 104
                 6889*******************************987......69******************************************996 PP

  == domain 2  score: 48.6 bits;  conditional E-value: 3.1e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetl 89 
                 ls++++ ++G+++g+ +++++ P++ v++rlqtq +s+++ ++++ ld+++++    G+    rGl+p+l+r     + +f++ye l
  CCD22679.1 114 LSLTQYYFCGVTGGISNSFLASPIEHVRIRLQTQTGSGSNVQFKGPLDCIRQLKNAGGI---MRGLTPTLFREGHGIGTYFLIYEAL 197
                 788999***********************************************998888...69*********************86 PP

  == domain 3  score: 72.5 bits;  conditional E-value: 1.1e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 ++s+lk +l G+l+g++ +l+++Pldv+K  +qt++ ++ k ++  + +v k++y ++Gl +++rG++p++lr apa++++f+++e   rll
  CCD22679.1 210 DISPLKLCLFGALSGTTLWLMVYPLDVIKSIMQTDNIKNPKFGK-TMGSVAKTLYAKQGLGAFFRGFGPTILRAAPANGATFATFELAMRLL 300
                 6889999*******************************998554.499***************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2254.56
//
Query:       CCD22680.1  [L=390]
Description: hypothetical protein NDAI_0A05250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-06   26.7   0.5      5e-05   23.1   0.5    2.3  1  SIP1      Survival motor neuron (SMN) interacting protein 1 (
  ------ inclusion threshold ------
      0.056   13.9   0.9      0.098   13.2   0.9    1.5  1  Spectrin  Spectrin repeat
      0.084   13.3   0.6        0.2   12.1   0.2    1.8  2  DUF5598   Domain of unknown function (DUF5598)


Domain annotation for each model (and alignments):
>> SIP1  Survival motor neuron (SMN) interacting protein 1 (SIP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.5   8.4e-09     5e-05      48     191 ..     167     317 ..      43     373 .. 0.60

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 8.4e-09
        SIP1  48 q....tvympsipeiakcp......esllPtkeWeqeqladFselRqklsalreelqkkekkqkiklpkikdeekwkefclgegnePllsills.ldqv 135
                 +      y++   e+ +++      +sl+ ++eW +++la+  e   +     ++++k    ++ + +     ++w e++l    eP+ s  +s ++ +
  CCD22680.1 167 ErndqDDYVKHLAEVLQHHfvenedDSLIIDNEWAERTLAKIREGEVRTI---DDIKKFISGNSYEPYG---FSQWYEYLLTT--EPTHSCFCSvINGR 257
                 03333333333333333223333336666677777777766665544222...2344444444333222...24577777755..9**99998746889 PP

        SIP1 136 tveslleyliewle....eeeelskelaqWlyallavlekPLdadtcsalRsllrkcakl 191
                 ++  l++y+ + l     ++++ s+ l++Wl  +l  l + ++a+  s+lR+l +kc ++
  CCD22680.1 258 NIWILVQYYQQGLLekiySNDQNSDRLNVWLLYILFHLPNNITANSTSLLRDLGKKCQNI 317
                 99999**9998877455566777777*******************************986 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.9   1.6e-05     0.098       2      67 ..     120     185 ..     119     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin   2 llqqfaqdadeleeWieekeellssedlgkdleevqallkkhkaleaelaaqqervkalnelaekl 67 
                 +l qf q+++++ eW + +++ l ++ +  d +++  l+  +k + +e ++q++ vk+l e+ +  
  CCD22680.1 120 KLIQFRQNMEQCIEWFKTARNSLIQNGYRYDDTTLNLLVYYFKKYLEERNDQDDYVKHLAEVLQHH 185
                 678********************************************************9876554 PP

>> DUF5598  Domain of unknown function (DUF5598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.5   1.5e+04      54      74 ..      79      99 ..      74     109 .. 0.69
   2 ?   12.1   0.2   3.3e-05       0.2      16      78 ..     123     191 ..     119     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.5
     DUF5598 54 gqvvteekveeakevvkehfk 74
                +++vt ++ ++ +++ +++  
  CCD22680.1 79 KPIVTASMYDDDEKIADNTPL 99
                567888888888888776554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.3e-05
     DUF5598  16 qypkgtekvysyl.esRkg.....gkydevvffGLqyllkeylegqvvteekveeakevvkehfkkevf 78 
                 q+ +++e+   ++ ++R++      +yd++++  L y  k+yle++   ++ v++ +ev+++hf ++ +
  CCD22680.1 123 QFRQNMEQCIEWFkTARNSliqngYRYDDTTLNLLVYYFKKYLEERNDQDDYVKHLAEVLQHHFVENED 191
                 88999998776652577779998889********************99999*************75544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       828  (0.0461822); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2782.28
//
Query:       CCD22681.1  [L=339]
Description: hypothetical protein NDAI_0A05260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.8e-108  361.2   0.2   4.4e-108  361.0   0.2    1.0  1  Tfb4           Transcription factor Tfb4
  ------ inclusion threshold ------
      0.012   15.4   0.2      0.071   13.0   0.2    2.3  1  Rad50_zn_hook  Rad50 zinc hook motif
      0.029   14.3   0.1          3    7.8   0.0    2.9  3  Cucumopine_C   Cucumopine synthase C-terminal helical bundle 


Domain annotation for each model (and alignments):
>> Tfb4  Transcription factor Tfb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.0   0.2  7.4e-112  4.4e-108       1     276 []      23     308 ..      23     308 .. 0.96

  Alignments for each domain:
  == domain 1  score: 361.0 bits;  conditional E-value: 7.4e-112
        Tfb4   1 pslltvvldtnpkawaeleek....ltlsevlasllvflNahLalnaaNkvaviashsqkakflYpseek.ekeaskkkdvelskssknkyrefrlvde 94 
                 pslltv++d++pk+w+el+++     +l +vl+sl+vflNahLa+n++N+vaviashsq++k+lYp+++k ++e+s++k ++ls ++k++yr+fr+vde
  CCD22681.1  23 PSLLTVIIDITPKLWTELDQEteenGSLISVLKSLIVFLNAHLAFNSSNQVAVIASHSQGIKYLYPQNTKgSDEESSSKTKDLSIINKDMYRRFRNVDE 121
                 79***************9998888899****************************************99867788889999****************** PP

        Tfb4  95 lvveelkellsetskaeekaek.sllagalslaLcyinrvsklaeaeaeklksRilv.....vsaskdsalqyipimNviFaaqklkipidvvklgg.k 186
                 ++veel++l+++++ + +k ++ s+l+ga+s++L+yinr s++ ea   +lksR++v       +skd+ +qyipimN+iF+a+k k+pidvvk+gg +
  CCD22681.1 122 TLVEELYTLFEKERDQIDKFKQkSTLSGAMSAGLTYINRLSRELEA--ISLKSRLMVltcggKGESKDEIFQYIPIMNCIFSANKIKCPIDVVKIGGsE 218
                 **************999998888*****************999997..6********7766656799******************************99 PP

        Tfb4 187 dsafLqQasdaTkGvylkvkepkgllqyLltaflidqssRsllvlptrvsVdfRasCfchrkvvdiGfvCSvCLsilceispenkCktCe 276
                  s+fLqQ++daT+Gvyl+v++ kgl+qyL+ta++id+s+R+++v+p++ sVdfR+sC++++kvv+iG++CSvCL++l+ i p nkC++C+
  CCD22681.1 219 RSTFLQQTTDATNGVYLHVESSKGLIQYLSTAMFIDPSLRQIIVKPNHGSVDFRTSCYLTGKVVAIGYICSVCLCVLSIIPPGNKCPACD 308
                 9*******************************************************************************9999*****7 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.2e-05     0.071      19      40 ..     301     322 ..     300     322 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
                    SEE-TTT--EE-HHHHHHHHHH CS
  Rad50_zn_hook  19 kgcCPlCgReldeehrseLike 40 
                    +++CP C++e+de+  ++L k+
     CCD22681.1 301 GNKCPACDSEFDEHVIAKLKKK 322
                    469**********999999986 PP

>> Cucumopine_C  Cucumopine synthase C-terminal helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.14   8.5e+02     112     138 ..      42      68 ..      24      78 .. 0.76
   2 ?    7.8   0.0    0.0005         3      97     135 ..     124     162 ..      99     166 .. 0.91
   3 ?    2.3   0.0     0.025   1.5e+02      40      57 ..     245     262 ..     227     272 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.14
  Cucumopine_C 112 deletredflalvsalalYvNrlnawn 138
                   +e+e    +++++++l  + N++ a n
    CCD22681.1  42 QETEENGSLISVLKSLIVFLNAHLAFN 68 
                   455666678888888888888887766 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0005
  Cucumopine_C  97 lekladllkeleelideletredflalvsalalYvNrln 135
                   +e+l  l ++ ++ id+ ++++ +   +sa ++Y+Nrl 
    CCD22681.1 124 VEELYTLFEKERDQIDKFKQKSTLSGAMSAGLTYINRLS 162
                   577888999999*************************97 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.025
  Cucumopine_C  40 qylstlvfangelRtlgy 57 
                   qylst +f++  lR+++ 
    CCD22681.1 245 QYLSTAMFIDPSLRQIIV 262
                   9*************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      685  (0.0382063); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2580.99
//
Query:       CCD22682.1  [L=1058]
Description: hypothetical protein NDAI_0A05270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-45  153.9   6.0    2.4e-45  153.9   6.0    4.1  4  Sec8_exocyst  Sec8 exocyst complex component specific domain
  ------ inclusion threshold ------
       0.43   10.1   8.0       0.16   11.5   4.3    2.2  2  Exonuc_VII_L  Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> Sec8_exocyst  Sec8 exocyst complex component specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9   6.0   2.7e-49   2.4e-45       1     141 [.      33     173 ..      33     174 .. 0.99
   2 ?    2.2   0.1     0.018   1.6e+02      95     137 ..     315     357 ..     307     360 .. 0.90
   3 ?   -2.1   0.1      0.35   3.2e+03      66     100 ..     645     678 ..     637     686 .. 0.75
   4 ?   -2.5   0.0      0.48   4.3e+03      42      78 ..     819     856 ..     816     861 .. 0.79

  Alignments for each domain:
  == domain 1  score: 153.9 bits;  conditional E-value: 2.7e-49
  Sec8_exocyst   1 kLkevlnkikeeWpavlsddanpvelalsllDdssvGlahrlkefkqlkkqieeaLqevvnehhqaFnssiasYskilssiqesqekvselKeslee 97 
                   +L+++l+ i+++W+++ls+++np+elal++lDd+svGl+hr+kef+qlk++i ++Lqevvneh+q+Fn ++asY+k++ssi+e qe++s +K++ + 
    CCD22682.1  33 NLQNDLSLIETQWNRILSEKTNPLELALAFLDDTSVGLGHRYKEFNQLKENIGNHLQEVVNEHSQVFNANVASYGKTVSSITETQENTSLVKKNFKL 129
                   69*********************************************************************************************** PP

  Sec8_exocyst  98 akkklstkkkeLkelnarsakykevieiLdaieelkkvpdkieq 141
                    + ++  +k +Lkeln+ +++y+++i+ L+ +ee+ ++p+ ie+
    CCD22682.1 130 VNDNIIMQKGTLKELNEANMNYNNIINSLSFVEEVLQIPEIIED 173
                   ******************************************97 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.018
  Sec8_exocyst  95 leeakkklstkkkeLkelnarsakykevieiLdaieelkkvpd 137
                     + k+++++++  L+    + + y ++  +L+ i++++k+p 
    CCD22682.1 315 TTNEKENITNNNVVLSTDRSQCSDYLRIFYLLSLIQDINKLPT 357
                   56678999*********************************96 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.35
  Sec8_exocyst  66 aFnssiasYskilssiqesqekvselKesleeakk 100
                    F ++ a ++++  +i +++++++ l++++ +a  
    CCD22682.1 645 IF-KAAADFQQLFYNILQAANTTNILRKKIMNAIL 678
                   45.45578999999999999999999998887755 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 0.48
  Sec8_exocyst  42 lkefkqlkkqieeaLqevvnehh.qaFnssiasYskil 78 
                   ++ f+  k+ +ee+L+   ++    +F ++i  +++++
    CCD22682.1 819 FETFNLNKSTTEEHLRILLDKEMgAKFDKAIDGFESLQ 856
                   67899999999999999988665267999999998876 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.3   1.8e-05      0.16     141     289 ..      23     211 ..      15     222 .. 0.70
   2 ?   -2.8   0.1      0.39   3.5e+03     188     221 ..     482     488 ..     426     552 .. 0.44

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.8e-05
  Exonuc_VII_L 141 dkaeleeqleelerrl...ekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.k..ekleekker 231
                   +++ +++++++l++ l   e++++r l+ek + le +   l + +  l ++ +++++l+e++ ++l++ ++++++ ++   +++ k  ++++e++e+
    CCD22682.1  23 QQHAMNSSIDNLQNDLsliETQWNRILSEKTNPLELALAFLDDTSVGLGHRYKEFNQLKENIGNHLQEVVNEHSQVFNANVASYgKtvSSITETQEN 119
                   3455566666666654111567888888888888876666678888999999999999999999999999999998888887776678666677766 PP

  Exonuc_VII_L 232 lkklkerle..............lleekkerleeleekleal....................splkvLkrGyaivrkedgkvvtsakdlkkg 289
                   ++ +k++++              +l+e++ ++++++++l+ +                    + +k+L+rG+ ++ ++d k ++  k + ++
    CCD22682.1 120 TSLVKKNFKlvndniimqkgtlkELNEANMNYNNIINSLSFVeevlqipeiiedhlrndeykDVQKLLERGFLLLNNHDLKNLKPLKPITQQ 211
                   6555555555556665555544446666666666555555557777777777777777777799***********99877777777666655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.39
  Exonuc_VII_L 188 krqrldeleerleralkkqlkkkrerleelkerl 221
                   ++ +                           +rl
    CCD22682.1 482 NNYK---------------------------NRL 488
                   1111...........................111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1058 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1483  (0.0827152); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 6936.89
//
Query:       CCD22683.1  [L=436]
Description: hypothetical protein NDAI_0A05280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-56  191.5   1.5    4.5e-56  190.1   1.5    1.6  1  Pkinase        Protein kinase domain
    2.6e-27   95.7   0.1    1.8e-22   79.9   0.1    2.2  2  Pkinase_Tyr    Protein tyrosine kinase
    0.00012   21.2   0.3     0.0002   20.4   0.3    1.5  1  Haspin_kinase  Haspin like kinase domain
  ------ inclusion threshold ------
      0.047   13.0   0.1      0.075   12.4   0.1    1.3  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
       0.11   11.8   0.1       0.41    9.9   0.1    1.9  1  Kinase-like    Kinase-like
       0.17   11.7   0.1       0.31   10.9   0.1    1.3  1  APH            Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.1   1.5   1.5e-59   4.5e-56       1     264 []      54     386 ..      54     386 .. 0.90

  Alignments for each domain:
  == domain 1  score: 190.1 bits;  conditional E-value: 1.5e-59
                 EEEEEEEEEESSEEEEEEE...ETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykav...eketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee.....kdelylvleyveggeladlle 90 
                 y+  + lG+Gs+G V +a+   +++++  +A+Kki +   ++   k+++rE+k++  lk h+ni+ l++          d ly  +e+++++ l+++++
  CCD22683.1  54 YQITQMLGKGSYGIVCSAKdtlNSSSNYSIAIKKIINIYSREILLKRAIRELKFMIFLKgHKNIISLIDLEIIndnlqYDGLYCYQELIDHD-LTKVIH 151
                 678899*********98872225678999**********999999**********************98654433676788999******77.****** PP

                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..................................BC CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..................................lt 155
                  + +l++ ++k +++qi+ g++y+Hs+ iiHrDlKp NiL+   g+lKi+DFGla+ ++ + +                                   t
  CCD22683.1 152 SSAILTDFHIKYFIYQIICGIKYIHSADIIHRDLKPGNILVTWYGNLKICDFGLARGINPKFRrnqesnniqrqpltnsqtqsqstfkpsnnnadndIT 250
                 99********************************************************9987788999******************************* PP

                 TTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS................... CS
     Pkinase 156 sfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei................... 233
                 ++v+t++Y+APE+l +++ey+k++D+W++G+il+el+ ++p+f+g ++++       q+ +i+k+lg +++++l + +++                   
  CCD22683.1 251 NYVATRWYRAPELLlSRKEYTKAIDMWAIGCILAELYGRTPIFRGINQQH-------QIYEIIKVLGpPSNKTLIKFDSLtswqlfngsgktmkkptkf 342
                 **************999***************************666655.......666688889973333333333345778899999999****** PP

                 .............-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 .............seeakdllkkllkkdpkkRltaeellqhpyl 264
                                +a+++l+ ll++dp +R+ aee+++h++l
  CCD22683.1 343 nskidwklkysniTTDAISFLETLLTWDPDDRFNAEEAINHSFL 386
                 *****************************************996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.1   6.1e-26   1.8e-22       2     159 ..      55     215 ..      54     228 .. 0.84
   2 !   13.8   0.0   8.9e-06     0.026     162     215 ..     248     303 ..     234     316 .. 0.72

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 6.1e-26
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS.-BTTB--EEEEEE.....SSSSEEEEEE--TTEBHHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkkl.khpnivkllgvct.....keepllivteyvkgGdLlkfL 92 
                  ++++ lG+G++G V++++ +  ++++++++a+K++ + +++e   ++ ++e+k+m  l  h+ni++l+ + +     + + l+   e++++ dL k +
   CCD22683.1  55 QITQMLGKGSYGIVCSAKDT-LNSSSNYSIAIKKIINIYSREIlLKRAIRELKFMIFLkGHKNIISLIDLEIindnlQYDGLYCYQELIDH-DLTKVI 150
                  57899*************99.99999*******9966555554399************99********99884444444448888888887.899999 PP

                  HHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE CS
  Pkinase_Tyr  93 rkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey 159
                  +++  + lt  ++  f++q+ +G++y++s +++Hrdl   N+L++     ki+DfGLar i+ + + 
   CCD22683.1 151 HSS--AILTDFHIKYFIYQIICGIKYIHSADIIHRDLKPGNILVTWYGNLKICDFGLARGINPKFRR 215
                  997..8999999999*********************************************9444333 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 8.9e-06
                  TTSSTSGGGGS.-HHHHHHSE.EEHHHHHHHHHHHHHHHHTTSSGT.TTTS.HHHHHH CS
  Pkinase_Tyr 162 keeaklpvkWm.apEslkekk.ftsksDvWsfGvllwEiftlgesp.ypgl.kneevl 215
                  + ++ +  +W+ apE l ++k +t++ D+W+ G +l E++  g++p ++g+ ++++++
   CCD22683.1 248 DITNYVATRWYrAPELLLSRKeYTKAIDMWAIGCILAELY--GRTPiFRGInQQHQIY 303
                  455667889988***9766554****************97..5666234453444455 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.3   6.8e-08    0.0002     126     256 ..      84     208 ..      33     232 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 6.8e-08
  Haspin_kinase 126 vvlKviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeev.klkswkqalsifwqivkiLy 220
                    ++ K+i +    ++  +    + elk +  +kg  ++++ l+  ++++++    + + l+++ +l d+  dL++v + + + +  +i + i +i+ 
     CCD22683.1  84 AIKKIINI-YSREILLK--RAIRELKFMIFLKGH-KNIISLIDLEIINDN---LQYDGLYCYQELIDH--DLTKViHSSAILTDFHIKYFIYQIIC 170
                    34455555.56666666..3459***********.999999999999999...889999999999886..88887555556666777777777776 PP

  Haspin_kinase 221 vaE..tkfeFEHRdLhldniLvdknlnvtlidlklsRl 256
                          + +  HRdL+ +niLv   +n  ++d+ l+R 
     CCD22683.1 171 GIKyiHSADIIHRDLKPGNILVTWYGNLKICDFGLARG 208
                    55411455788*************************95 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.5e-05     0.075     121     188 ..     162     224 ..      88     240 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.5e-05
         Kdo 121 rallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwrekdLarLkr 188
                 +  + ++   i+ +h+a++ H+dl + nil+   +    ++ + D+  ar    ++  r+++ ++++r
  CCD22683.1 162 KYFIYQIICGIKYIHSADIIHRDLKPGNILVTWYG----NLKICDFGLARGIN-PKFRRNQESNNIQR 224
                 5556667778999*******************999....56666776666655.44444444444444 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00014      0.41      95     189 ..     105     204 ..      99     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
  Kinase-like  95 kkpfiqlkskesiywvvnallllpaasvdl.....eilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlgg 187
                   k +i lk +++i +++++ ++  + ++d      e++ + l k+    + l +   ++   q+i  + ++++  ++h ++++ n+l   +g l++ +
   CCD22683.1 105 LKFMIFLKGHKNIISLIDLEIINDNLQYDGlycyqELIDHDLTKVIHSSAILTDFHIKYFIYQIICGIKYIHSADIIHRDLKPGNILVTWYGNLKICD 202
                  56677888888899888888888888998557776666677777777777787777777779************************************ PP

  Kinase-like 188 ft 189
                  f+
   CCD22683.1 203 FG 204
                  97 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1    0.0001      0.31     168     196 ..     180     206 ..     176     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0001
                 EE-SS-SGGGEEEC...TTEEEEE---TT- CS
         APH 168 llHgDlhpgNllvd.pddgrvtGviDfeda 196
                 ++H+Dl+pgN+lv+  ++ +   + Df++a
  CCD22683.1 180 IIHRDLKPGNILVTwYGNLK---ICDFGLA 206
                 89************655555...7788877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3027.85
//
Query:       CCD22684.1  [L=93]
Description: hypothetical protein NDAI_0A05290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-26   90.2   0.6    1.2e-25   89.7   0.6    1.2  1  HMG_box    HMG (high mobility group) box
    2.7e-17   63.1   0.7    2.7e-17   63.1   0.7    1.3  2  HMG_box_2  HMG-box domain
    7.6e-05   22.6   0.0    0.00012   21.9   0.0    1.3  1  CHDNT      CHDNT (NUC034) domain
     0.0024   18.4   0.5     0.0093   16.5   0.0    1.9  2  Ccdc124    Coiled-coil domain-containing protein 124 /Oxs1
  ------ inclusion threshold ------
      0.013   15.4   2.3      0.013   15.4   2.3    1.5  1  HMG_box_5  HMG (high mobility group) box 5
      0.072   13.7   0.5      0.072   13.7   0.5    1.5  1  YABBY      YABBY protein


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.6     4e-29   1.2e-25       1      69 []      21      89 ..      21      89 .. 0.98

  Alignments for each domain:
  == domain 1  score: 89.7 bits;  conditional E-value: 4e-29
                --SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  1 pkRplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69
                pkR lsa+++f++++r+ +kaenP+++  +i+k lg+kWk+l++eeK++Y++ka+++k+rye+ek+ y+
  CCD22684.1 21 PKRGLSAYMFFANDNRDIVKAENPNITFGQIGKVLGAKWKELNDEEKQPYQDKADADKKRYESEKELYN 89
                8****************************************************************9995 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3       4.6   1.4e+04      57      65 ..       3      11 ..       2      16 .. 0.62
   2 !   63.1   0.7     9e-21   2.7e-17       1      72 [.      18      88 ..      18      89 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.6
                HHHHHHHHH CS
   HMG_box_2 57 kAkedkkry 65
                +Ake k r 
  CCD22684.1  3 EAKEPKRRV 11
                566666654 PP

  == domain 2  score: 63.1 bits;  conditional E-value: 9e-21
                ---.-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS-- CS
   HMG_box_2  1 pkkpkaarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkrydrealty 72
                p+ pk+  +AY++f+ + ++ +k++ np i ++ + k ++ kWk l++eeK++Y++kA +dkkry++e   y
  CCD22684.1 18 PNAPKRGLSAYMFFANDNRDIVKAE-NPNITFGQIGKVLGAKWKELNDEEKQPYQDKADADKKRYESEKELY 88
                789**********************.*****************************************98776 PP

>> CHDNT  CHDNT (NUC034) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   4.1e-08   0.00012      11      50 ..      24      63 ..      23      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 4.1e-08
       CHDNT 11 nltnyKlFsqhvRPlllkenPkvavsklvmLvaakwrEFq 50
                +l+ y  F +  R ++  enP+++  ++ +++ akw+E  
  CCD22684.1 24 GLSAYMFFANDNRDIVKAENPNITFGQIGKVLGAKWKELN 63
                6899999*******************************65 PP

>> Ccdc124  Coiled-coil domain-containing protein 124 /Oxs1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.1e-06    0.0093      74     120 ..      14      60 ..       5      65 .. 0.90
   2 ?   -0.2   1.3      0.46   1.4e+03      15      35 ..      68      85 ..      59      93 .] 0.35

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.1e-06
     Ccdc124  74 ekldrhpekrlkAaYkafeeeeLprlkeenpgLrlsQlkqllkkewk 120
                 +k+d +  kr   aY  f + + + +k+enp++   Q+ ++l  +wk
  CCD22684.1  14 RKKDPNAPKRGLSAYMFFANDNRDIVKAENPNITFGQIGKVLGAKWK 60 
                 677888889999*******************************9998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.46
     Ccdc124 15 keekekkekkkakkkeveeke 35
                +  ++   k  a+kk +e+++
  CCD22684.1 68 QPYQD---KADADKKRYESEK 85
                22222...2222222222222 PP

>> HMG_box_5  HMG (high mobility group) box 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   2.3   4.4e-06     0.013      35      67 ..      53      85 ..      16      93 .] 0.89

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.4e-06
   HMG_box_5 35 kameatwsnmekkekimwikkaaedqkryerel 67
                k++ a w++++  ek  +  ka  d+krye e 
  CCD22684.1 53 KVLGAKWKELNDEEKQPYQDKADADKKRYESEK 85
                88999************************8653 PP

>> YABBY  YABBY protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5   2.4e-05     0.072      98     141 ..       5      48 ..       1      59 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.4e-05
       YABBY  98 qeeeeeekvvnrppekrqRvPsaYnrFikeeiqRikaenPdish 141
                 +e +++    ++ p+  +R  saY  F  ++   +kaenP+i+ 
  CCD22684.1   5 KEPKRRVVRRKKDPNAPKRGLSAYMFFANDNRDIVKAENPNITF 48 
                 4445555777899999**************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 673.93
//
Query:       CCD22685.1  [L=187]
Description: hypothetical protein NDAI_0A05300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.9e-16   58.0   0.0    1.2e-15   57.8   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.3e-11   44.7   0.0    1.7e-11   44.4   0.0    1.2  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    3.3e-10   40.0   0.0    4.5e-10   39.6   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    6.2e-06   26.1   0.1    9.8e-06   25.5   0.1    1.2  1  FR47             FR47-like protein
    0.00015   21.9   0.0    0.00038   20.5   0.0    1.7  2  Acetyltransf_9   Acetyltransferase (GNAT) domain
     0.0014   18.3   0.0     0.0021   17.7   0.0    1.2  1  Acetyltransf_8   Acetyltransferase (GNAT) domain
      0.003   18.2   0.0     0.0035   18.0   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
     0.0068   16.5   0.0      0.018   15.2   0.0    1.6  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase
  ------ inclusion threshold ------
      0.011   15.2   0.1      0.044   13.3   0.1    1.8  1  Acetyltransf_15  Putative acetyl-transferase
      0.026   14.7   0.2      0.048   13.9   0.2    1.4  1  Ribonuc_2-5A     Ribonuclease 2-5A


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   6.7e-19   1.2e-15      31     117 .]      58     145 ..      16     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 6.7e-19
                     TTCEEEEEEETTEEEEEEEEEEEET.TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  31 eaegllvaeedgeliGfisllkipd.ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                      +++  v   d  +iG+i ++   +  ++ ++yi  laV + yrg+G+ ++L+e ++ +++++g+++i+l++e+ n+ a +lYe +GF
      CCD22685.1  58 KNNSNNVDVSDKVPIGCIICKNELHrFSRMRGYIGMLAVESHYRGQGISKKLVEIAITQMESNGCDEIMLETEVENVIALNLYENMGF 145
                     3334444555677*****9999999955779****************************************************99**9 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   9.6e-15   1.7e-11      11      75 ..      68     146 ..      31     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 9.6e-15
                     TTEEEEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEE.EE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  11 dgkivGfialslld.......aeitrlaVdpeyrgkGiGraLleaae.....kgii.le.qlelnaekaikfYeklGFe 75 
                     d+ ++G+i+++ +        ++i+ laV  +yrg+Gi ++L+e+a+     +g+  +  ++e+++  a+++Ye +GF+
      CCD22685.1  68 DKVPIGCIICKNELhrfsrmrGYIGMLAVESHYRGQGISKKLVEIAItqmesNGCDeIMlETEVENVIALNLYENMGFI 146
                     36778*99999888999999899999******************6233456677763224455555599*********7 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   2.5e-13   4.5e-10      48     113 ..      84     152 ..      52     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2.5e-13
  Acetyltransf_10  48 l.rdgshisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGFkavgeeq 113
                        r +++i++l+V+++yrgqGi+k+L+e +++++e +g  +  l+ +  +  a ++Ye++GF ++++++
       CCD22685.1  84 FsRMRGYIGMLAVESHYRGQGISKKLVEIAITQMESNGCDEiMLETEVENvIALNLYENMGFIKMKRMF 152
                      334456****************************999999888888888889**********9998876 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   5.4e-09   9.8e-06      18      82 ..      85     150 ..      80     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.4e-09
                 E-TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-.S-EEEEEETT-HHHHHHHHHHT-EEEEE CS
        FR47  18 rkdggelgalqvlpehrrrGlgsrlvkalakeiaerg.ktvllvvvasNtpsirlyeklGfekiee 82 
                  +  g++g+l v+   r++G  ++lv+  + ++  +g ++++l +  +N  + +lye +Gf k++ 
  CCD22685.1  85 SRMRGYIGMLAVESHYRGQGISKKLVEIAITQMESNGcDEIMLETEVENVIALNLYENMGFIKMKR 150
                 5667***********************88888888663789999******************9854 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.1e-07   0.00038      74     125 ..      89     145 ..      74     148 .. 0.87
   2 ?   -2.0   0.0       1.9   3.5e+03      95     114 ..     148     167 ..     140     175 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.1e-07
                     EEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--EEEE--.....SSHHHHHTTT- CS
  Acetyltransf_9  74 agvtgVavapehrgrgvlskLlaraleemreegqplsllfP.....ssipiYrrfGy 125
                     +++++ av  ++rg+g+ +kL++ a+++m+++g   ++l       ++ ++Y+ +G+
      CCD22685.1  89 GYIGMLAVESHYRGQGISKKLVEIAITQMESNGCDEIMLETevenvIALNLYENMGF 145
                     89*******************************988888877777666777877777 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.9
                     HHHHHHHHHHTT--EEEE-- CS
  Acetyltransf_9  95 laraleemreegqplsllfP 114
                     ++r+++++  eg+ + l+ P
      CCD22685.1 148 MKRMFRYYLNEGDAFKLILP 167
                     67778888888887777777 PP

>> Acetyltransf_8  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.2e-06    0.0021      86     141 ..      95     149 ..      87     152 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.2e-06
                     ESSHHHCTTTCHHHHHHHHHHHHHCCTT--EEEE--BTT-HHHHHHHHHTT-EEEE CS
  Acetyltransf_8  86 igeaeargkglttallralvhylfadprtrrvvvEPdvrNerairllekaGfekek 141
                       e ++rg+g+ ++l++  + ++ ++ +++ +++E +v+N  a++l+e++Gf k k
      CCD22685.1  95 AVESHYRGQGISKKLVEIAITQMESN-GCDEIMLETEVENVIALNLYENMGFIKMK 149
                     447889*********99998887666.*************************8876 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.9e-06    0.0035      58     137 ..      66     145 ..      11     146 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.9e-06
  Acetyltransf_3  58 ivlkdtgv.iGsvglrdleeedee..aelgymlaps.fwgkGyateavralleyafeelglerlvavidkeNeaSirvleklGf 137
                     +  +d+ v iG++ + +  ++  +  + +g++  +s ++g+G+ +  v+ +++ + e  g ++++ +++ eN    +++e +Gf
      CCD22685.1  66 V--SDK-VpIGCIICKNELHRFSRmrGYIGMLAVEShYRGQGISKKLVEIAITQM-ESNGCDEIMLETEVENVIALNLYENMGF 145
                     2..444.77****999666665557899998888776******************.7777***********************9 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.3   7.7e+03      11      23 ..      45      57 ..      36      68 .. 0.63
   2 !   15.2   0.0   9.8e-06     0.018      32      57 ..      96     121 ..      90     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.3
  Acetyltransf_CG 11 evafleYevrkeg 23
                     e afl ++v++e+
       CCD22685.1 45 ELAFLAFDVTEEE 57
                     5678888755544 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 9.8e-06
  Acetyltransf_CG  32 VpeelrGkGiAkkLvkaalddareeg 57 
                      V+ ++rG+Gi kkLv+ a+ +++++g
       CCD22685.1  96 VESHYRGQGISKKLVEIAITQMESNG 121
                      899*****************999988 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.4e-05     0.044      78     103 ..      94     138 ..      89     160 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
  Acetyltransf_15  78 lyvsekyrgkGlakklLeeslkelk...................k 103
                      l v+++yrg+G++kkl+e +++++                    +
       CCD22685.1  94 LAVESHYRGQGISKKLVEIAITQMEsngcdeimletevenvialN 138
                      7899****************9998644444433333333333333 PP

>> Ribonuc_2-5A  Ribonuclease 2-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.2   2.7e-05     0.048      71     119 ..      11      60 ..      10      66 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.7e-05
  Ribonuc_2-5A  71 NkkeHyeelpedvkeilgelpe.gflsYftkrFPkLlievyevvketlke 119
                   N   H++el++ + + l+e  +  +++Yf +++P+L   +++v++e +++
    CCD22685.1  11 NNLTHFNELKKLIDADLSEPYSiYVYRYFLNQWPELAFLAFDVTEEEKNN 60 
                   7889*********99998844414579****************9998544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1421.44
//
Query:       CCD22686.1  [L=1373]
Description: hypothetical protein NDAI_0A05310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-41  141.5   0.0    1.5e-41  141.5   0.0    3.5  4  ATG11           Autophagy-related protein 11
  ------ inclusion threshold ------
        5.5    7.0   6.0         19    5.3   0.0    4.1  4  Pox_A_type_inc  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> ATG11  Autophagy-related protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.81   7.3e+03      16      50 ..     244     278 ..     239     284 .. 0.83
   2 ?   -1.3   0.9      0.23   2.1e+03      10      40 ..     858     888 ..     832     920 .. 0.75
   3 ?   -4.9   1.6         2   1.8e+04      14      44 ..     954     983 ..     947     988 .. 0.66
   4 !  141.5   0.0   1.7e-45   1.5e-41       1     128 [.    1181    1367 ..    1181    1368 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.81
       ATG11  16 kkltkenkskkekleklqseskekitlknfkvgDL 50 
                 +kl +e+ks+ +k+ ++++  +e +++++f v+ L
  CCD22686.1 244 EKLIEETKSQIKKIINSNNICEEFLKVYSFDVEKL 278
                 67888999999999999999999999999988765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.23
       ATG11  10 dveelakkltkenkskkekleklqseskeki 40 
                  +++    l+ e k+++e l+kl++e ++ i
  CCD22686.1 858 LISSQKVDLNLECKAYRETLTKLNEELSKII 888
                 4555566677777777777777777655544 PP

  == domain 3  score: -4.9 bits;  conditional E-value: 2
       ATG11  14 lakkltkenkskkekleklqseskekitlkn 44 
                 l  k++    + +++l+k+++ +ke+i l n
  CCD22686.1 954 LEAKYQTKITNLENELDKFKK-QKETIELAN 983
                 555666666677777777777.667777665 PP

  == domain 4  score: 141.5 bits;  conditional E-value: 1.7e-45
       ATG11    1 essvikrfkdveelakkltkenkskkekleklqseskekitlknfkvgDLalflptrreeq...................dlstqp........... 67  
                  es+vi+rfkd+e+lak+ltkenk kk +l+k+q+   e+itlk+f+vgDLalflptr++ +                   dlst+p           
  CCD22686.1 1181 ESAVIRRFKDIEMLAKRLTKENKLKKALLDKFQK---ERITLKDFQVGDLALFLPTRENISsmgkidsapssmnssfssvDLSTPPpfktettlsth 1274
                  689*******************************...********************9987999998888888888888855555578888888888 PP

       ATG11   68 ...............................waafna..gaphYfLkeeselalksrewlvGrivkieekvvdekdeNpfklskglkwylvkaa 128 
                                                 waaf+a  ++++YfLk+++el+ +++ew+vG+i +++++vv  ++ Npfkl+ g+ w++v+a+
  CCD22686.1 1275 nnsntdaspvkngmtnlsvpdvvshhkvfrpWAAFTAfdECTRYFLKDNNELT-SNKEWFVGQILTMQKFVVGPTTYNPFKLPIGSIWIQVTAK 1367
                  8888888899999999999999999999999*********************9.**************************************97 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.5      0.88   7.9e+03       4      12 ..     402     410 ..     401     411 .. 0.79
   2 ?   -1.5   0.1       0.3   2.7e+03       3      17 ..     703     717 ..     702     719 .. 0.80
   3 ?    1.8   0.0     0.028   2.5e+02       6      16 ..     831     841 ..     828     850 .. 0.65
   4 ?    5.3   0.0    0.0021        19       6      19 ..     958     971 ..     956     972 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.88
  Pox_A_type_inc   4 srlRsRIsD 12 
                     +  RsRI++
      CCD22686.1 402 DKMRSRIRS 410
                     677****97 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.3
  Pox_A_type_inc   3 msrlRsRIsDLErqL 17 
                     +  ++ RI  LE+ L
      CCD22686.1 703 IKNYQHRIKKLESIL 717
                     567999******977 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.028
  Pox_A_type_inc   6 lRsRIsDLErq 16 
                     l+++I +L++q
      CCD22686.1 831 LQNEINELKNQ 841
                     56666666665 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.0021
  Pox_A_type_inc   6 lRsRIsDLErqLse 19 
                     ++++I  LE++L++
      CCD22686.1 958 YQTKITNLENELDK 971
                     89**********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2310  (0.128842); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.08u 0.25s 00:00:01.33 Elapsed: 00:00:00.44
# Mc/sec: 9369.05
//
Query:       CCD22687.1  [L=453]
Description: hypothetical protein NDAI_0A05320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-43  148.0   0.1    2.5e-25   89.4   0.0    2.2  2  tRNA-synt_2d  tRNA synthetases class II core domain (F)
    1.2e-25   89.8   0.7    4.2e-25   88.0   0.1    2.2  2  FDX-ACB       Ferredoxin-fold anticodon binding domain
  ------ inclusion threshold ------
       0.96    8.0   3.6       0.23   10.1   0.1    1.6  2  Tweety        Tweety


Domain annotation for each model (and alignments):
>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   3.6e-19   2.2e-15      35     152 ..      80     200 ..      48     237 .. 0.68
   2 !   89.4   0.0   4.1e-29   2.5e-25     143     245 .]     240     344 ..     228     344 .. 0.85

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 3.6e-19
                   CEESS.TTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-ECESEEE-SSTHHHHHHHH....TTS-SSEEEEEE.EEEEBSST-SSSB-SEEE CS
  tRNA-synt_2d  35 feeve.gpevesefynfdaLnvpqdhpaRdmqdtFylkkpekaveekllLRthttavqirtl....ekkkppikiisi.grvfRrdavDathlaeFh 125
                   ++ ++  + + +++ nfd L +p  hp R+ +dt+y+       ++++lLRtht+a +i       +++ +  + + i   v+Rrd++D+th ++ +
    CCD22687.1  80 YKTFNnFSPIVTKWQNFDSLGFPPTHPGRSKSDTYYI-------NDTTLLRTHTSAHEIECFqdinDDSGHNWRGFLIsADVYRRDEIDKTHYPVLY 169
                   555553344669*************************.......6799*************98777555577776665267**************** PP

                   EEEEEEE....ETT--HHHHHHHHHHHHHHH CS
  tRNA-synt_2d 126 qveglvv....denvsladlkgvleellkkl 152
                   q+eg  +     e  +++  ++ l++ l+++
    CCD22687.1 170 QMEGSHLwtrpRETSNMEAEIKSLQSTLNEM 200
                   ***9765222222344444333333333333 PP

  == domain 2  score: 89.4 bits;  conditional E-value: 4.1e-29
                   HHHHHHHHHHC...TST.EEEEEEECEETTEEEEEEEEEEECCSSSSEEEEEEEEEE-HHHHHHTT-..TTSEEEEEEEEHHHHHHHHHT-SSGHHH CS
  tRNA-synt_2d 143 gvleellkklf...gae.vkvrfrpsyfpftePsaevdvylvekkkkwlEllgaGmvrpevleavgid.eevsgfafGlGveRlamlkygieDiRel 234
                    +le ++ +l    +++ vk+r+ ++ fp+t+Ps e+++++    ++wlE++g+G+++++ l + +++ +++ g afGlG++R+aml +gi+DiR l
    CCD22687.1 240 TTLEIVVLELCrlkNMKdVKMRWTNTTFPWTQPSWEIEIWW---DNQWLEICGCGIIKQDLLLKSDFEkDSTIGWAFGLGLDRIAMLLFGIPDIRLL 333
                   4444443332211133349**********************...99**********************88899************************ PP

                   HTT.HHHHGGG CS
  tRNA-synt_2d 235 vendlrflrqf 245
                   ++nd rf+ qf
    CCD22687.1 334 WSNDKRFIGQF 344
                   ********987 PP

>> FDX-ACB  Ferredoxin-fold anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.41   2.5e+03      42      60 ..     153     171 ..     149     210 .. 0.54
   2 !   88.0   0.1     7e-29   4.2e-25       1      94 []     356     453 .]     356     453 .] 0.99

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.41
                 EEEESTTS-SSEEEEEEEE CS
     FDX-ACB  42 DvYrgkklaegkkSlalrl 60 
                 DvYr +++++++  + +++
  CCD22687.1 153 DVYRRDEIDKTHYPVLYQM 171
                 5666655555554444433 PP

  == domain 2  score: 88.0 bits;  conditional E-value: 7e-29
                 -SS--EEEEEEEEEES......SS-HHHHHHHHHHHH-TTEEEEEEEEEEESTTS-SSEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHTT.T-BE CS
     FDX-ACB   1 SkfPaverDlalvvde......kveaaelleavreaagellesvqlfDvYrgkklaegkkSlalrltlqskertLtdeevnaaiekvvealekklgael 93 
                 Sk+P   rD+a+++++      ++++++++e+vr+ ag+l+esv+l D++ ++k  ++k+Sl++r+++qs++r +t++e+n+++ekv+++l+kk+++el
  CCD22687.1 356 SKYPGTLRDVAFWLPDilqdneEIHENDVMEIVRDVAGDLVESVKLTDEFIHPK--THKRSLCYRINYQSMDRNITNSEINSLQEKVRNELVKKYHVEL 452
                 8********************9********************************..9****************************************** PP

                 S CS
     FDX-ACB  94 R 94 
                 R
  CCD22687.1 453 R 453
                 9 PP

>> Tweety  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   3.8e-05      0.23     287     332 ..      11      56 ..       5      58 .. 0.94
   2 ?   -3.1   0.7      0.38   2.2e+03     118     142 ..     203     227 ..     183     266 .. 0.36

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.8e-05
      Tweety 287 esqkaltemqeqveellriavelfptaekkLlaiqellnsternlh 332
                  +q ++ + +e++ +ll i  +++pt++k+ +  q++ln t+rnlh
  CCD22687.1  11 ICQYSILKTKEALPKLLTINGKEYPTSNKDTNVTQSILNLTNRNLH 56 
                 68999999*************************************9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.38
      Tweety 118 sleekleeeLtkleeifakrtdlle 142
                 + +++l+++  ++e   ++r+d+++
  CCD22687.1 203 NNKMTLTRCQDEVEPPTETRQDYMT 227
                 2222222222233333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3321.57
//
Query:       CCD22688.1  [L=235]
Description: hypothetical protein NDAI_0A05330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-36  123.5   0.0    7.9e-36  123.0   0.0    1.3  1  Ribosomal_L16  Ribosomal protein L16p/L10e


Domain annotation for each model (and alignments):
>> Ribosomal_L16  Ribosomal protein L16p/L10e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.0   4.4e-40   7.9e-36       5     132 .]      50     182 ..      46     182 .. 0.93

  Alignments for each domain:
  == domain 1  score: 123.0 bits;  conditional E-value: 4.4e-40
                    XXBSSSX...XSSTSXXXSXXXXXESXEEEEES.SXEEEEHHHHHHHHHHHCTCCCCTSXCEEXXSXXXXEEEEE-SS-TTTSSSSXEEEEEEEEE CS
  Ribosomal_L16   5 kyrKsrk...ryirgvstkgtklefgdygLval.ekgqltaealeaariainrylkkkrgkklwirvfphhpvtkkagedRmgkGkGkpegwvarv 96 
                      +K++k    +  g s kg++l+fg++g++ + e+ +lta +l+aa  a+ ry++  ++++lw r +++  v+ k++e+RmgkGkG +++w++rv
     CCD22688.1  50 DQKKKQKgrvPVRVGGSIKGSTLQFGTFGMRLKsEGTRLTADQLKAADTALMRYVRPLNNGQLWRRLCCNVAVCVKGNETRMGKGKGDFDHWMVRV 145
                    455666676788899*****************9999************************************************************ PP

                    XSSCEEEEE.TTXXXSHHHHHHHHHHHHTSSSXEEEE CS
  Ribosomal_L16  97 kigqiifei.kagvneeiakealrraasKlpiktkiv 132
                     +g+iife+  ++++e +a+ea+r+a  Klp+ +++v
     CCD22688.1 146 PTGKIIFEMsGDNLHERVAREAFRKAGDKLPGVYEFV 182
                    *********65557******************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1870.69
//
Query:       CCD22689.1  [L=358]
Description: hypothetical protein NDAI_0A05340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-09   38.1   1.2    5.3e-09   36.1   0.3    2.3  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
    1.8e-05   25.2   0.3    8.3e-05   23.0   0.0    2.1  2  AAA              ATPase family associated with various cellul
      0.002   18.1   0.1     0.0042   17.0   0.1    1.7  1  Rad17            Rad17 P-loop domain
     0.0037   17.0   0.3      0.024   14.4   0.3    2.1  2  DNA_pol3_delta   DNA polymerase III, delta subunit
     0.0075   16.7   0.0      0.022   15.2   0.0    1.8  1  Rep_fac_C        Replication factor C C-terminal domain


Domain annotation for each model (and alignments):
>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.3   1.5e-12   5.3e-09      22     159 ..      39     190 ..      18     193 .. 0.63
   2 ?   -2.8   0.0       1.3   4.6e+03      97     113 ..     309     327 ..     254     332 .. 0.70

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.5e-12
  DNA_pol3_delta2  22 yLfeGdegigkkelalnlakallceeknetk........pcgecksckkieqgkhpDvivi...........eteeker.........sikldq 87 
                      +L++G++g+g+k+  ++l ++++ +   + k        +           ++k  +++v+           +     +           ++ q
       CCD22689.1  39 LLMYGPNGSGRKTRCMALLESIFGSGIYRLKidirqfvtA-----------SNKKLELNVVsspyhleitpsDMG---NndriviqelLKEVAQ 118
                      5666666666666666666666666655543332221111...........111112222211222222221111...1333444433234455 PP

  DNA_pol3_delta2  88 irelieelsrkpreskkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkf 159
                       +++  + s+ +   ++k +ii+da+ +t+ A+ al +t+E  s+n+ +i++ ++ ++++ +irSRc  +++
       CCD22689.1 119 MEQVDFQDSNDGLAHRYKCVIINDANSLTRDAQAALRRTMEKYSRNIRLIMLCDSMSSIISPIRSRCLMIRV 190
                      5555666677788899***************************************************99976 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
  DNA_pol3_delta2  97 rkpre..skkkiiiiedae 113
                      ++p +   k+ki iie   
       CCD22689.1 309 KNPNIvkDKYKIGIIESSS 327
                      4443323677888887665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.3e-08   8.3e-05       1     126 [.      39     187 ..      39     191 .. 0.75
   2 ?   -1.1   0.1      0.67   2.4e+03      23      52 ..     207     236 ..     198     248 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.3e-08
                 EEEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.............................STTHHHHHHHHHHHHHHHTS......TSEE CS
         AAA   1 vllyGppGtGKTllakavakel...gvefleisgsellsk.............................yvgesekkirelfkeakeka......kpsi 61 
                 +l+yGp G G+ + + a+ +++   g++ l+i+  +++                               +++e  k+++++ +   + +      + ++
  CCD22689.1  39 LLMYGPNGSGRKTRCMALLESIfgsGIYRLKIDIRQFVTAsnkklelnvvsspyhleitpsdmgnndriVIQELLKEVAQMEQVDFQDSndglahRYKC 137
                 699******************655556666666666663345666667799999999988887667777555555555555554333334667754488 PP

                 EEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSE CS
         AAA  62 lfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdr 126
                 ++i ++ +l+++            +++L + ++++++   ++ +i+ + +++++ ++++ +R+ +
  CCD22689.1 138 VIINDANSLTRDA-----------QAALRRTMEKYSR---NIRLIMLCDSMSSIISPIR-SRCLM 187
                 8888888887777...........*************...6******************.99965 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.67
                 THEEEEEETTTCSSSSTTHHHHHHHHHHHH CS
         AAA  23 gvefleisgsellskyvgesekkirelfke 52 
                 + e ++i+  ++l+++ +es++++r  +  
  CCD22689.1 207 SKENVKIENGSILNHIAKESNANLRVALLM 236
                 456688889999999999999999876655 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.2e-06    0.0042       8      91 ..       3      84 ..       1     181 [. 0.63

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.2e-06
       Rad17  8 lWfekykPekaeelavhkkkieevkewlkadvLesrkkr..iLLisGPsGCgkst.vvkvLskelgik.lrewlnpvslkepdnqksd 91
                lW++ky+P++++ l+ h + + +v + l      +++k    LL+ GP G g+ t  +  L  ++g   +r  ++  ++  ++n+k +
  CCD22689.1  3 LWVDKYRPKTLKTLS-HTESLTNVLKSLS-----HQPKDlpHLLMYGPNGSGRKTrCMALLESIFGSGiYRLKIDIRQFVTASNKKLE 84
                7************97.8888888866554.....444443379********9777245666666665413444555555555555544 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.2     7e+02      73     114 ..      16      57 ..       5      64 .. 0.75
   2 !   14.4   0.3   6.8e-06     0.024      58     166 ..     135     234 ..     104     242 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.2
                     T-S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHH CS
  DNA_pol3_delta  73 sklnekllkeLeeylsnlpedtlLiliapkklderkklvklL 114
                      + +e+l++ L+++  ++++  +L++++p+   ++++ + lL
      CCD22689.1  16 LSHTESLTNVLKSLSHQPKDLPHLLMYGPNGSGRKTRCMALL 57 
                     4578899999999999999999*****995555555555555 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 6.8e-06
                     EEEEEEE--.....TT-S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHH. CS
  DNA_pol3_delta  58 krivvlknpklltkesklnekllkeLeeylsnlpedtlLiliapkklderkklvklLkkkatvveaktlkeeelkkwiqkraqelglkiekeal. 151
                      + v+++++      ++l+ + +++L +++++++ ++ Li+ +     +  +++  + ++  ++++  + + e+ + ++++a+++++kie+ ++ 
      CCD22689.1 135 YKCVIINDA------NSLTRDAQAALRRTMEKYSRNIRLIMLCD----SMSSIISPIRSRCLMIRVPAPLNGEIVNILNEVASKENVKIENGSIl 219
                     566777777......77999***********************9....66689999***********************************9853 PP

                     HHHHHHHTT-HHHHH CS
  DNA_pol3_delta 152 elLlelvennlsaik 166
                     + +++ ++ nl+++ 
      CCD22689.1 220 NHIAKESNANLRVAL 234
                     789999999998865 PP

>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.1e-06     0.022      20      88 .]     281     349 ..     263     349 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.1e-06
                 HHHHHHHHHHHHC---HHHHHHHHHHHGCCS...S-HHHHHHHHHHHHHHHHHHHCTH-HHHHHHHHHHH CS
   Rep_fac_C  20 eaykklrellvekGysaediltqlhrvvkeq.eelpeaqkleilellgeiekrlveGasehlqlsallar 88 
                 e++++l  +l ++ ++a+ il++l   ++++ + ++++ k+ i+e  + ++ rl+ G     +l++++ar
  CCD22689.1 281 ECRAILY-DLLAHCIPAKTILQELTFALIKNpNIVKDKYKIGIIESSSLFDERLSLGNKAIFHLEGFIAR 349
                 6777886.999999*********96666665465999*******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2504.41
//
Query:       CCD22690.1  [L=1052]
Description: hypothetical protein NDAI_0A05350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-109  366.8  23.1   2.1e-109  366.5  23.1    1.1  1  Adaptin_N        Adaptin N terminal region
      2e-07   31.2   0.0    5.5e-07   29.8   0.0    1.7  1  Alpha_adaptin_C  Alpha adaptin AP2, C-terminal domain
  ------ inclusion threshold ------
      0.074   13.5   2.6        3.3    8.2   0.5    3.4  2  ATP-synt_8       ATP synthase protein 8


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.5  23.1  3.6e-113  2.1e-109       1     523 [.      41     671 ..      41     672 .. 0.94

  Alignments for each domain:
  == domain 1  score: 366.5 bits;  conditional E-value: 3.6e-113
                 XHHHCCHHHHHHCCSSS..................-SCHHHHHHHHHHHHHHHCT---G.....HHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCH CS
   Adaptin_N   1 eekriqqelaeilnsnk..................dddekkkeavkkliylialGedvs.....flffevvklvaskdfelKrlvYlylellaeesedl 76 
                 +ekriq+el++i+++++                  +++++kk +++kl+y+++++++++     f++ ++v l++s  f++K+++Y++lell+e ++ +
  CCD22690.1  41 QEKRIQTELVKIKQHFNssstkntshshgshhdklGGYQRKK-YIAKLAYVYITSNTTKlndilFGLDQTVQLLSSTAFSEKFIGYMTLELLYEHRQVV 138
                 589************************999998877777777.*************99999999**********************************9 PP

                 HCC...CCHHHHHHCCSSSHHHHHHHHHHHCCC-.....-CCCHHHHHHHHHHHHT-SSH..HHHHHHHHHHHHCCCC.....CHHCCCCC.HHHHHHH CS
   Adaptin_N  77 alL...vtnslqkDlkdpnqlirglALrvLssir.....vpelaedlapaikkllkdrsp..yvrkkAalailklykk.....dpdllrkq.lveeike 159
                  ++   vt+ l +Dl+ +++++++lAL++++++      +  + + +  ai+++l+++++  y++kk+al++l+l+k+     + d +rkq ++++i++
  CCD22690.1 139 EKVnekVTYYLLQDLSESDDNFVALALHFVGTVAllpfnQFATNDEIISAIFQILRSPTSshYLKKKSALSFLTLLKAnpvilTDDMQRKQlWIQRIVS 237
                 999999**************************998885555666**************999*****************8888888999*********** PP

                 CTT-SS.HHHHHHHHHHHHHH.HCCCCCCC.HHHHHHHCCHHHHH.....................HCS-HHHHHHHHHHHCC---SSHHHH....... CS
   Adaptin_N 160 llsdkd.pgvvlaAvalleei.kkndrlll.kllpklvrrLcnll.....................teldpwlqvkiiklltrlarqepeersk..... 229
                 ll+d++ +++ laA+ l e i k  d  ++ +l+p+l+++L+n++                     ++++pwl++k ++ll+ l+ ++ e ++k     
  CCD22690.1 238 LLDDTSnYRLCLAALPLVEYIaKNIDSTYCiRLVPQLTEILYNCVvvgtsssssvanqfpmeykfaNIPNPWLITKTVSLLSFLIISQNETTNKqlqsh 336
                 ****998**************999999*******************************************************88777777774556666 PP

                 .........HHHHHHHCGGCG....................CSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX. CS
   Adaptin_N 230 .........kellesllnllq....................ssnnaVlletvnlivelapknelivlavnaLvrllsskdenlryvaLrtllkivkke. 298
                          ++l +++l++l+                     ++n+Vl++++n++ +l+p++++i+  vnaL++llss+d n+ry++L++llk+++ + 
  CCD22690.1 337 sgpntllyaSNLNPEVLSKLRqcvtvaielgmrtcndpmekIVQNTVLFSLINFASKLDPTDDAIKSSVNALCSLLSSPDINTRYLTLDSLLKLCSLSg 435
                 77777888878888888888888889999********************************************************************99 PP

                 ...XTTTT...TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHT...TSSXXHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTT CS
   Adaptin_N 299 ...pkavq...hldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyv...kevadedfksklvkaIgrlaekfatdaewvldvllellsl 388
                    +++v+   +l l+++ lk ++d+si +k +dll++++d++Nvk iv+eL+++v   +++ d+ +ks+++ +I+ l+ek+a d +w++ + l++lsl
  CCD22690.1 436 evaINSVRynkNLGLIFNILKHERDSSIVRKCIDLLYTFTDSENVKLIVEELLNFVlhsRNLNDPHMKSDIAVKIAVLTEKYAMDSNWFVIISLKILSL 534
                 99999999944555799****************************************9999************************************** PP

                 XXHHH...HHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG.XXSHHHHHHHHHHHHHTTTTXTT....HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHH CS
   Adaptin_N 389 sgesv...kdeivevirdliqkvpelheeiiekLaellek.ieseearaaaiWllGeygelvsnte.sasdllrslaekfvlesekvklqiltalvKly 482
                 +++ +   +d i++++++++++++ lh+ ++ +L+++l k  +se +++  ++llGey+ +v++ + s+++l++++  k++  s+++k++ilt+++Kly
  CCD22690.1 535 TNNNApfnDDGIWQRLCQIVVNNSHLHKLTCDQLVDYLYKnECSESIIKTSAFLLGEYCGKVQD-KiSIANLFNLFTDKYSMVSNVTKAMILTTMIKLY 632
                 **9999999*****************************99778889*****************6.99******************************** PP

                 HCXGCC.THXHHHHHHHHHHHXXSHHHHHHHHHHHHHHCCX CS
   Adaptin_N 483 ltspdketqekliqlvlslatssdlevrdRaveylqllssa 523
                 ++ p  e+++ +i++++  ++s+d+e+++R++eyl++++ +
  CCD22690.1 633 NFAP--EIGSWVIKFFQLELNSLDIELQTRSYEYLKIIQIS 671
                 ****..8999***************************9865 PP

>> Alpha_adaptin_C  Alpha adaptin AP2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   9.2e-11   5.5e-07      11     101 ..     937    1032 ..     930    1040 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 9.2e-11
  Alpha_adaptin_C   11 dFfkrWkqlggap.reaqkifklk....aaekeidee..tvrkvleGfrlavlenvdpnpenivgagvlhtsesgkvgcLlrlepNkqakmv 95  
                       +F++rWk l+ a  ++   if       +a+  ++e+  t+r++l+ +++ ++ ++++ ++ i  +g++ht++ g++gcL++++   +  ++
       CCD22690.1  937 EFIQRWKMLSTALgKDGEFIFDSVpfkkDATVDMEEArmTIRQILKRLGFDIV-EQNSVKNTIFVSGIIHTKSDGNFGCLMKVKYQDD-GKI 1026
                       8*********985277788999767744555555554225689999******5.55777788999*****************998744.556 PP

  Alpha_adaptin_C   96 rltiRa 101 
                        lt ++
       CCD22690.1 1027 NLTCKT 1032
                       666655 PP

>> ATP-synt_8  ATP synthase protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.5   0.00055       3.3       6      44 ..     306     344 ..     306     351 .. 0.82
   2 ?    2.9   0.1     0.026   1.5e+02       8      32 ..     522     535 ..     520     543 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00055
  ATP-synt_8   6 tstWltiillmwltLfiliqlkllsftyptnpkskslkl 44 
                 +++Wl++ ++++l+++i+ q  +++  +     +++l  
  CCD22690.1 306 PNPWLITKTVSLLSFLIISQNETTNKQLQSHSGPNTLLY 344
                 78*******************999988777777776655 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.026
  ATP-synt_8   8 tWltiillmwltLfiliqlkllsft 32 
                 +W++ii+l +l+L           t
  CCD22690.1 522 NWFVIISLKILSL-----------T 535
                 5666666666655...........4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1052 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1123  (0.062636); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 7136.66
//
Query:       CCD22691.1  [L=1010]
Description: hypothetical protein NDAI_0A05360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-34  117.9  27.9    5.2e-34  117.9  27.9    2.7  2  Anoctamin     Calcium-activated chloride channel


Domain annotation for each model (and alignments):
>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9  27.9   2.9e-38   5.2e-34       8     435 ..     146     613 ..     145     617 .. 0.77
   2 ?  -14.3  18.1         1   1.8e+04     280     310 ..     837     882 ..     639     904 .. 0.69

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 2.9e-38
   Anoctamin   8 kiAlYFawlgfytsallppavlGlllfl.yglatitlfdneltvvfalfmviWatlflelWkrreaelaykWgtsdfeeeeeprpefrgelkrespvtg 105
                 k +lYFa++  yt+ l ++a+ Gl++ + +g+    +f+ e++ ++++ + iW+  f+  W     + +ykW++++ +++e  +            +  
  CCD22691.1 146 KLSLYFAYMATYTKKLKYLAIAGLMVRIlFGN----SFH-EFSTLYSIGLNIWTLYFTTSWIYD-LQPKYKWKLTHGQSDESDN------------I-- 224
                 789***********************996554....355.7999*****************865.899******9888777311............1.. PP

   Anoctamin 106 eeefyyppwkrrlfrllvslplvllliclavvgvlilrclalqelvssvke.....llsflptvlnlvlililnevykkla.iwltdlEnhrtqseyek 198
                   + y +p + r+++l+  +p+v  +++++ ++ + l c++++++++++++     +l++lpt+l  ++ + l+ +++kl  ++++ +En       +k
  CCD22691.1 225 --NSYDNPNTVRIKKLC-FIPIV--IAFVIALISFQLLCFVIEIFITQLYDgplirILTLLPTILISIFTPTLQTIFNKLFvEKFVAWENGPN---PKK 315
                 ..113334443566555.67788..6667777777778999**********99888888**************99999986589******876...568 PP

   Anoctamin 199 slilKvflfqfvnsylslfyiaFvkgkflkypgkylr............rseecdeegcleelkeqLaiilvtkqllnnilevllPyl..........k 275
                 s + K f+++f+ +y++l+++ F++ +f  + +++ +              ++ + +  +++ k+q+++++vt+ql+ ++++++lP++          +
  CCD22691.1 316 SKVEKNFMLTFFINYSPLLITLFLYLPFGYKFTPEWKqrttryvqsmnvPVTKSNFKVHTNRYKIQFFYFTVTNQLILFFTQNILPLImekvlpkfkdE 414
                 8899*********************966543333333566688889988899999999****************************8844444333220 PP

   Anoctamin 276 eklkkkkk......esekdekeeeeskkltqaek..eyelkkyedlf..ddYlemviqfGyvtlFsaafPlapllallnniieirldafklvt...... 358
                        +       + k + +++  k+++ +e+   y   +++++     Y ++ iq G+v++Fs ++Pl p++++++n i i+ d ++ +       
  CCD22691.1 415 -------NkptstkFKIKRQFKKSYPKDFKLWERtnSYITGPWDEFNedINYEKLNIQLGFVIMFSIIWPLSPMICYIFNHIIIKADLWRAIEkckpsv 506
                 .......12333322233333444455666666543444555654445568************************************99999989999* PP

   Anoctamin 359 ..............elrRpvperaesiGiWqkilealgvlavitnalli........................altsdpekdteqylsvlaarlafvvv 419
                                ++     +a+   +W+ il ++++++    +ll                         ++++          + +  +l+f v+
  CCD22691.1 507 psfsriqqqntvplKVKDNNTVNANPTFVWNIILMVMAIIGSTLSSLLTymyrnchlpdvgytsplekediwyRFFP------L--SHSWPSILLFAVI 597
                 *9999944444444444444445555668*************99999998888877777765555555555555555......4..68999******** PP

   Anoctamin 420 lehvvlllkyliavli 435
                 +eh+vll  ++++ ++
  CCD22691.1 598 MEHIVLLSYFFLSRIV 613
                 *******999998765 PP

  == domain 2  score: -14.3 bits;  conditional E-value: 1
   Anoctamin 280 k...............kkkesekdekeeeeskkltqaekeyelkky 310
                 +               ++++++++++eee+ ++ +q ++e+e+++ 
  CCD22691.1 837 EplppgkhtkqvqqeqEQQQQKHQQDEEEQYRQEQQQRQEHEYEQE 882
                 0444444333333322222333333333333333333444333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1010 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3867  (0.215684); expected 358.6 (0.02)
Passed bias filter:                      833  (0.046461); expected 358.6 (0.02)
Passed Vit filter:                       270  (0.0150594); expected 17.9 (0.001)
Passed Fwd filter:                        55  (0.00306766); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.54u 0.35s 00:00:01.89 Elapsed: 00:00:00.53
# Mc/sec: 5723.74
//
Query:       CCD22692.1  [L=705]
Description: hypothetical protein NDAI_0A05370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-68  229.2   9.3    1.1e-67  228.7   9.3    1.3  1  Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
    1.7e-50  171.3   1.3    2.8e-50  170.6   1.3    1.4  1  DNA_pol_E_B    DNA polymerase alpha/epsilon subunit B
  ------ inclusion threshold ------
      0.037   14.1   0.0       0.11   12.6   0.0    1.8  1  DNA_pol_D_N    DNA polymerase delta subunit OB-fold domain


Domain annotation for each model (and alignments):
>> Pol_alpha_B_N  DNA polymerase alpha subunit B N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.7   9.3   1.8e-71   1.1e-67       1     246 []      15     304 ..      15     304 .. 0.84

  Alignments for each domain:
  == domain 1  score: 228.7 bits;  conditional E-value: 1.8e-71
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX...............XXX.XXXXXXXXX.XXXX... CS
  Pol_alpha_B_N   1 pdvlseleslmklhalsvedLfiKWEsfsikmkleeskkltlknlrefkkdlqdqlekra...............kss.kkpktekksaaatpraa 80 
                    p++l+ le+l+k+ha+s+edL+iKWE+fsi  k+e++++++l+nl++fk++lq+q+ek+a               +ss kkp+++++  +a+p   
     CCD22692.1  15 PEILTILENLSKIHAISAEDLYIKWEQFSI-GKNETHTEYSLRNLDQFKQFLQQQVEKHAksisspiiknksnnpSSSlKKPRSLRPL-NASP--- 105
                    79****************************.99*************************777899999999888764447999999999.9999... PP

                    .....XXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX..XXXXXXXX......................... CS
  Pol_alpha_B_N  81 akngdlfgmldglipstpalkkrklssakrksafetpsrskssssklefsspeasktpasaekksessegl........................p 152
                         +fg+  +++p+tp lkkrkl+sa    ++++ + ++++ +klef+++++s++ +++e++++s+                           +
     CCD22692.1 106 -----MFGIPLNSSPRTPLLKKRKLASA----NQTNLNGNTPNGAKLEFNNGNDSNSDIKMEQEQGSE-RPpasdiidnetstvsvkseitfdsaN 191
                    .....********************944....455556667778899999999999988885555444.222446666666555555555554444 PP

                    ...XXXXXXX.................XXXXXXXX.XXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXX--S---HHHHHHHHHHHH CS
  Pol_alpha_B_N 153 svsfsdrqnp.................geiletLN.ehlelaegpiapfsel.........esrvkltaatDpkkykYrtMaqklsEasevLDdrI 221
                    +        +                 g+il++LN e++++++g  + + +          e++vk+++++Dp+kyk+rtM+q+l +as+vLD++I
     CCD22692.1 192 T--------SainnmsnvkiepgedtfGKILDSLNpENMDVSTGLNLNILKGlesnsdknrENKVKIAPFYDPQKYKFRTMRQNLIDASDVLDEQI 279
                    4........155555666999999999*****************55444333799***************************************** PP

                    HHHHHHHHHHHT--GGGB--TTS-- CS
  Pol_alpha_B_N 222 defaeliqehyklddsefgdpalqs 246
                    ++f+++iqehy+l++++f+dp++qs
     CCD22692.1 280 EIFTKIIQEHYNLSPNQFSDPTIQS 304
                    ************************8 PP

>> DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.6   1.3   4.7e-54   2.8e-50       1     210 [.     409     640 ..     409     641 .. 0.99

  Alignments for each domain:
  == domain 1  score: 170.6 bits;  conditional E-value: 4.7e-54
                  EEEEES--S-TT----HHHHHHHHHHH.HTT--SEEEEES-SSBTTSHHHHHT---......S--SSHHHHHHHHTHHHHTTS-TTSEEEEE--TTBT CS
  DNA_pol_E_B   1 vvivsglnldndnrsleaLrkiLqgyapeesppdvlilaGnfvdaahkaiasskvs......tdekkenfdalalllsilesllekttvvlvPgpnDp 92 
                  v+++sg++++++n ++++L +++++++ ++ +p+v+i++G+f+d ++++i s++++       + k+ ++++ + +++il+++ ++++v+l+P ++D+
   CCD22692.1 409 VIVTSGPYFSETNIDMTPLIDFVDKIN-NQVKPHVVIMFGPFIDLTNPLISSGSIPtfpnlkIQPKTLDELFTKVMTPILKTINSQIQVILIPCTRDA 505
                  799************************.***************************9*****88999******************************** PP

                  T-S.-SBSB----TTTTT--TTT...EEE--BSEEEEETTEEEEE--S-HHHH---EEESHHHHHS-HHHHHHHHHHHHTBS---SS........... CS
  DNA_pol_E_B  93 ans.tvlPqqPlprlllsrikrvfkelklvtNPsrielnsvevvltsddivkdlkreslkesntdverlrklvktildqrhlaPlap........... 178
                   ++ +++Pq++++r+ l+ +k+    +k++tNPs+++ln++ +++++ di+kdlk+ ++  ++++++r+++++++il+qr+++P++p           
   CCD22692.1 506 LSQhASYPQDSFDRKQLQLPKN----FKCFTNPSTFQLNETFFGCSNVDIFKDLKEVTKGGETSSRNRFDRISEHILQQRRYYPIFPggtrnvkidke 599
                  **99****************99....8*********************************************************************** PP

                  .........--B-GGGGGGGB-GGG---SEEE---SS--EE CS
  DNA_pol_E_B 179 .........tlrpvswdkddalvleplPdvlvlpdelpeFa 210
                           +++ v+++ ++++v + +Pdv++ p+e+p Fa
   CCD22692.1 600 kkifkhiagADLEVPYLGLTEFVGNVTPDVMIFPSEMPRFA 640
                  ****************************************7 PP

>> DNA_pol_D_N  DNA polymerase delta subunit OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.9e-05      0.11      93     130 .]     342     379 ..     322     379 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
  DNA_pol_D_N  93 grvrLsgsgieseklvtGvvvavlGvetengdfeVedi 130
                   rvrL+ s+i++ +l  G +v+++G+ ++n +f V++i
   CCD22692.1 342 RRVRLDLSNIKELSLFCGQIVGLRGKNANNENFLVDEI 379
                  59*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5032.67
//
Query:       CCD22693.1  [L=1630]
Description: hypothetical protein NDAI_0A05380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-51  174.4   8.8    2.6e-51  174.4   8.8    4.6  5  CLASP_N      CLASP N terminal


Domain annotation for each model (and alignments):
>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1   0.00011       1.9      19     100 ..      42     124 ..      25     131 .. 0.85
   2 !  174.4   8.8   1.4e-55   2.6e-51       1     227 []     358     610 ..     358     610 .. 0.91
   3 !    1.8   0.1    0.0083   1.5e+02     130     173 ..     670     712 ..     660     716 .. 0.85
   4 ?   -4.1   0.3      0.51   9.2e+03      45      97 ..     893     946 ..     868     952 .. 0.64
   5 ?   -2.6   0.1      0.18   3.3e+03      90     126 ..    1567    1603 ..    1522    1607 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00011
     CLASP_N  19 lnwdaReknilklrslikgn.vpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpm.veillptLl 100
                 +++d + + +++++  +k + v+   ++++++ l   l  +  ++  L t   s +c l+k++a q  +++  + v++l++ ++
  CCD22693.1  42 TSIDEKLSLLTQFKGHVKKElVNIPSIPSYFKTLL-ELPKLYPNVINLITLSHSSLCYLIKRVAVQSPSNFNRLtVDKLINYFI 124
                 589999999***********888888888888887.45678899999***********************99988998887765 PP

  == domain 2  score: 174.4 bits;  conditional E-value: 1.4e-55
     CLASP_N   1 ldekaeellaafeg.ketelnwdaReknilklrsli...........kgnvpedaveelleclk..qlleailkalssLrttlsstgchllkelaiqlk 85 
                 l++++++ll +fe+ kete+nw+ R++n++++++ i            ++ + d+  +l+++lk  ++ + i+k+++sLrt+ls + c+l+k+++i l+
  CCD22693.1 358 LQSDLNQLLIPFENpKETEQNWKLRQSNVIEMKNRIfnsknsllfqsDSQSQPDNLMTLVSILKelNFFDQITKSALSLRTSLSLNTCQLIKDILILLN 456
                 68899****************************8773332222222112244566778999***88899****************************** PP

     CLASP_N  86 eq.ldpm.veillptLlkllgdtKkiisqnanqalaallsnas.fsprilqvlsvalqdKnvqpReysaiwLkilltrfe..........shkskleas 171
                 +  l ++ +++++++L +l+ +tKki+sq a+++l  ++ n++ f+++ +q  ++++++K+ +pR  s+i+L+++l++++          ++kskl ++
  CCD22693.1 457 DTyLTQQmLDQIFNILRNLITSTKKISSQFASHCLIVMIMNLNhFHNKFFQNSFALINEKSIFPRVISSILLRLILIKYNdngddninhdDNKSKLGNN 555
                 **976655**********************************99********************************************99999999999 PP

     CLASP_N 172 llldliekslkkgleDanptVRetaRstfweffkvwPsrAksll.ssldpkvrkale 227
                 +++  ie++lkkg++D ++ VRe++R tfw+++k +Ps Ak+ll +s++ +++k++e
  CCD22693.1 556 MVY--IEEWLKKGITDTQTIVRESMRLTFWYYYKSFPSDAKKLLnNSFSIQLKKSIE 610
                 988..*************************************************997 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.0083
     CLASP_N 130 rilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasll 173
                  + + ls+  ++++ ++R++s i+L+  +++ + +++++e++ +
  CCD22693.1 670 TMASTLSTMNSQRSSKIRSTSEILLRDHTKNNN-DRNSIEHNYG 712
                 556778888899***************999999.999**99865 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 0.51
     CLASP_N  45 eelleclkqlleailkalssLrttlsstgchllkelaiqlkeq.ldpmveillp 97 
                 ++ll++ k+l    l  + +L++    ++  ll +l+  + ++ ++ +++ +l+
  CCD22693.1 893 KNLLTLSKSLEIIPLGDIIELYSINNLESNDLLHKLLSLESHSsMATLINTILE 946
                 445555555556667777788888888888888888888888777777777765 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 0.18
     CLASP_N   90 pmveillptLlkllgdtKkiisqnanqalaallsnas 126 
                  +++  +++t+++   +   + + ++  +++ l++  +
  CCD22693.1 1567 NQITEIIQTMVDYTTSSRTRWRFQSIRIINRLWETRT 1603
                  4677888999999999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2037  (0.113615); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.43
# Mc/sec: 11286.49
//
Query:       CCD22694.1  [L=336]
Description: hypothetical protein NDAI_0A05390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-54  183.2   0.0    3.9e-54  182.6   0.0    1.2  1  GTP_cyclohydro2  GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> GTP_cyclohydro2  GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.6   0.0   2.2e-58   3.9e-54       4     152 ..      12     239 ..       9     251 .. 0.94

  Alignments for each domain:
  == domain 1  score: 182.6 bits;  conditional E-value: 2.2e-58
                      EEEEEEETT.EEEEEEEE--.....EEEEEE-.............................................................. CS
  GTP_cyclohydro2   4 aeaklptrf.gefrliayedkvdgkehlalvkgdi........................................................... 37 
                      a+a++pt+   ++ l+ y+++ d+kehla+v+g+                                                            
       CCD22694.1  12 ARARIPTTQgPDIFLHLYTNDQDNKEHLAIVFGEDirsrslfrqrpnetqqdrmirgayvgklhpgrtiadkddrlglqlhfdtngellpdynf 105
                      5799***9945699*******************999********************************************************** PP

                      ..........EEEEEE--HHHHHS-B--TTTTTHHHHHHHHHH...........HH-.EEEEEE--TTTTTHHHHHHHHHHHHHCT--HHHHHH CS
  GTP_cyclohydro2  38 ........pvlvRvHsecltgDvlgslrcdcgeqldealelia...........eegrGvlvylrqegrgigllnklkayalqdeglDTveanl 112
                               +lvR+Hsec+tg+ ++s+rcdcgeq d+a +li+            +g+Gv+vylrqegrgigl++klkay+lqd g+DTv+anl
       CCD22694.1 106 ttwdsaknSTLVRIHSECYTGENAWSARCDCGEQFDRAGKLISldvepetgikgGNGHGVIVYLRQEGRGIGLGEKLKAYNLQDLGADTVQANL 199
                      ******9989********************************999*******99999************************************* PP

                      HHT--S-----HHHHHHHHHTT--EEEEE-S-HHHHHHHC CS
  GTP_cyclohydro2 113 alglpadardygiaaqILkdlgvkkirLlTnnpekveaLe 152
                       l++p d rd++++  IL dlg++++rLlTnnp+k+++++
       CCD22694.1 200 LLKHPVDSRDFSLGKSILIDLGIENVRLLTNNPDKINQID 239
                      *************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.49
# Mc/sec: 2060.19
//
Query:       CCD22695.1  [L=389]
Description: hypothetical protein NDAI_0A05400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-28   96.2  10.7    6.5e-11   41.9   0.3    3.3  3  KH_1      KH domain
    7.2e-05   22.5  13.1     0.0062   16.3   0.5    3.5  3  KH_2      KH domain
     0.0004   20.2   5.2       0.77    9.7   0.7    3.4  3  KH_4      KH domain
  ------ inclusion threshold ------
      0.054   13.6  12.6       0.69   10.0   0.3    4.0  4  KH_5      NusA-like KH domain


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.5   2.7e-09   1.2e-05       3      61 ..      24      81 ..      22      83 .. 0.86
   2 !   35.1   0.3   1.9e-12   8.5e-09       1      57 [.     157     213 ..     157     221 .. 0.85
   3 !   41.9   0.3   1.5e-14   6.5e-11       4      65 ..     290     360 ..     287     361 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.7e-09
                EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT...T.-EEEEEESHHHHHHHH CS
        KH_1  3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpk.sedegsderevtisGspeavekAk 61
                ril+  + + +iIG +Gs+I +Ire   +kI + +  +   +++r++   G+ ++v +A+
  CCD22695.1 24 RILLSLKEAAKIIGLKGSTISKIRENNTVKIGISDkVPG--CSDRILSCAGPINNVSNAI 81
                7778888899***************77999**8743333..7**************9996 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 1.9e-12
                 EEEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT.....T.-EEEEEESHHHH CS
        KH_1   1 tlrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg..sderevtisGspeav 57 
                 t+r+++ +++ ++iIGkgG++Ik++ ++ g+kI+    +d    s+er ++i+G p ++
  CCD22695.1 157 TVRLIISNHHLSSIIGKGGNKIKSLISKHGVKIVAS--KDFLpdSQERLLEIQGFPGSI 213
                 6899***********************88*****54..4444579*********66556 PP

  == domain 3  score: 41.9 bits;  conditional E-value: 1.5e-14
                 EEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT..........T.-EEEEEE.SHHHHHHHHHHHH CS
        KH_1   4 ilvPsslvgriIGkgGsnIkeIreetgakIkvpk.sedeg.......sderevtisG.speavekAkelie 65 
                 +++P  +vg+i+Gk+G++I ++r+ t++kI + k +  ++       +++r++ti+   +++ve A+ +++
  CCD22695.1 290 VKIPEIYVGAIVGKQGNRIANLRKFTKTKIMIQKrDGQDDhhsdndeEENRIFTITSnLEKNVELAESMLL 360
                 89**********************99*****99655555589***************99999*****9985 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.3    0.0031        14      38      54 ..      34      50 ..      19      60 .. 0.82
   2 !   16.3   0.5   1.4e-06    0.0062      13      58 ..     143     189 ..     136     223 .. 0.82
   3 !    7.6   1.2   0.00076       3.4      35      58 ..     296     319 ..     283     354 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0031
                HHHTGGGHHHHHHHHHH CS
        KH_2 38 ivIGkgGsnikkigkel 54
                 +IG +Gs+i ki+++ 
  CCD22695.1 34 KIIGLKGSTISKIRENN 50
                59************975 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.4e-06
                 ETEEEEEEECCS.CEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHH CS
        KH_2  13 agvskveIerta.nrviiviresqpgivIGkgGsnikkigkelrkdi 58 
                 ++v++ eI+ ++   v+++i + +   +IGkgG +ik++ ++ + +i
  CCD22695.1 143 EEVAEEEIDLNKiGTVRLIISNHHLSSIIGKGGNKIKSLISKHGVKI 189
                 3455555555555************************9987766555 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00076
                 CHHHHHTGGGHHHHHHHHHHHHHH CS
        KH_2  35 qpgivIGkgGsnikkigkelrkdi 58 
                   g ++Gk+G +i +++k  + +i
  CCD22695.1 296 YVGAIVGKQGNRIANLRKFTKTKI 319
                 679**************9887777 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1    0.0029        13      29      55 ..      21      47 ..      18      48 .. 0.87
   2 !    9.7   0.7   0.00017      0.77      21      54 ..     146     181 ..     137     194 .. 0.79
   3 !    5.1   0.0    0.0047        21      30      58 ..     287     315 ..     276     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0029
        KH_4 29 veielnvegedlGrvIGkrGrtldAlq 55
                 ++++ ++ ++ +++IG +G t++ ++
  CCD22695.1 21 INLRILLSLKEAAKIIGLKGSTISKIR 47
                5788999999************98666 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00017
        KH_4  21 tee..eeeeeveielnvegedlGrvIGkrGrtldAl 54 
                  ee  + ++  +++l ++ ++l  +IGk G  +++l
  CCD22695.1 146 AEEeiDLNKIGTVRLIISNHHLSSIIGKGGNKIKSL 181
                 333224467889**********************98 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0047
        KH_4  30 eielnvegedlGrvIGkrGrtldAlqylv 58 
                 + ++++ +  +G ++Gk+G  +  l+  +
  CCD22695.1 287 KRNVKIPEIYVGAIVGKQGNRIANLRKFT 315
                 55777888889*********999998766 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.013        58      18      35 ..      31      48 ..      27      56 .. 0.88
   2 ?    5.8   0.6    0.0031        14       9      39 ..     162     186 ..     157     193 .. 0.79
   3 ?   10.0   0.3   0.00015      0.69      19      44 ..     297     321 ..     288     326 .. 0.87
   4 ?   -2.4   0.0       1.2   5.3e+03      29      45 ..     340     355 ..     337     357 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.013
        KH_5 18 pvGaivgkkGsrikavss 35
                ++++i+g kGs i+++ +
  CCD22695.1 31 EAAKIIGLKGSTISKIRE 48
                6789***********986 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0031
        KH_5   9 VkshnpnvdpvGaivgkkGsrikavsseLkg 39 
                 + +h+     + +i+gk+G +ik+++s+  g
  CCD22695.1 162 ISNHH-----LSSIIGKGGNKIKSLISKH-G 186
                 55566.....889************9985.5 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00015
        KH_5  19 vGaivgkkGsrikavsseLkgekidv 44 
                 vGaivgk+G ri ++  ++ ++ki++
  CCD22695.1 297 VGAIVGKQGNRIANLR-KFTKTKIMI 321
                 8*************85.677999987 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.2
        KH_5  29 rikavsseLkgekidvv 45 
                 ri ++ s L ++++++ 
  CCD22695.1 340 RIFTITSNL-EKNVELA 355
                 788999999.9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1237  (0.0689944); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 3125.97
//
Query:       CCD22696.1  [L=486]
Description: hypothetical protein NDAI_0A05410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-19   68.5  44.0      7e-14   51.7  28.6    3.4  2  Msap1           Mitotic spindle associated protein SHE1
  ------ inclusion threshold ------
       0.16   12.1   3.0         14    5.9   0.1    3.0  2  B-block_TFIIIC  B-block binding subunit of TFIIIC


Domain annotation for each model (and alignments):
>> Msap1  Mitotic spindle associated protein SHE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7  28.6   7.8e-18     7e-14      13     298 ..      48     375 ..      40     376 .. 0.60
   2 !   11.3  18.9   1.6e-05      0.14     226     294 ..     347     414 ..     301     472 .. 0.70

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 7.8e-18
       Msap1  13 neiieylGvskrlGnsvldeleqrasellPnvspektrllrkgedsenknaislk..fqdkhekrfevlddk.dtdysla...........kysgikrv 97 
                  +ii+ +Gvsk lGn+v+del+ r++        e+    + ++ds+  ++ ++   f+ kh+ +f+++++  d +y  +           +   ++r+
  CCD22696.1  48 SNIIDTIGVSKTLGNKVFDELDSRTTLKFQ-QLREQHNDNNNNDDSNDLTSSNFEefFKSKHNIQFNNMQSLqDYKYLYNinineqrqqaeQQQVLPRT 145
                 689*********************976665.344555555666666666888774449***********996255554446699*****9977778888 PP

       Msap1  98 Pgkrkng...sdadet......svavnlgspgsvkkkqksvgnvfsevtditkkirrlkvrissnlererterdkrrniisnaPlsrqr..qlheki.. 183
                 P k+      s  de       s+     +  + + k++s+    ++v+dit++irrl++r+s  ++++ +++d   + i n+Pls  +  q+  +i  
  CCD22696.1 146 PKKQSIDtiiSHNDENnnnnleSLKRFKTNDSTFRTKRRSIVPTATPVSDITRRIRRLRLRTSIANKKDVSNNDALYS-IMNTPLSNAKplQMSSSIpq 243
                 85554321213344431000113333344556778999****************************999999887665.55766666552233333322 PP

       Msap1 184 ...........PtflrPtatslkrkkmndtlhklvasdrnnvellPktkrakPrvkdivrdlnkseksislPrkaP.vPkqrrisdsksvferlye.qs 269
                            Ptfl+Pt++ l++ k  ++  k   ++ +  +   ++  +  r   +    + s+ s s   + P vP+  + s ++    +l + q 
  CCD22696.1 244 pppnvnvpqhePTFLKPTINFLNKMKRSEPIFKNLNTHIKSKNPSINSGFSNVRFSSAPIVASSSSTSSSS-NSRPaVPDNTHTSRTSFRPPKLKQlQR 341
                 22111222222799999999999999999988865544433333222222333333322222222222222.233348887777766654444433244 PP

       Msap1 270 ti..srsnss...knllkqekttssdgnrkqlPk 298
                 t+  s sns    k+ ++ ++ ++   n+k +P 
  CCD22696.1 342 TVphSASNSIlrtKQSYNNNNIATKSSNTKTVPE 375
                 4411555553211334444455555566666665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 1.6e-05
       Msap1 226 rvkdivr...dlnkseksislPrkaPvPkqrrisdsksvferlyeqstisrsnssknllkqekttssdgnrk 294
                 + + i+r    +n++++  +      vP+  ++s+ +svf+rly qstisrs s++  +k   ++s++ nr+
  CCD22696.1 347 ASNSILRtkqSYNNNNIATKSSNTKTVPE--SVSNNRSVFDRLYTQSTISRSTSTN-TIKLP-ASSTNKNRH 414
                 45567765446788888888888888997..89*******************9987.55544.344444443 PP

>> B-block_TFIIIC  B-block binding subunit of TFIIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.4    0.0027        24      27      62 ..     103     139 ..      94     172 .. 0.76
   2 ?    5.9   0.1    0.0016        14      11      31 ..     438     458 ..     432     466 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0027
  B-block_TFIIIC  27 eskqdprslfyrlksLekkgLIvkqsii.dsatkksi 62 
                      +k + +  f  ++sL+++++ + ++i+ ++++  ++
      CCD22696.1 103 FFKSKHNIQFNNMQSLQDYKYLYNININeQRQQAEQQ 139
                     5666677779999**************8744444444 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0016
  B-block_TFIIIC  11 IassRysGitqsdLakeskqd 31 
                     I++s++sG ++s+L+++s  +
      CCD22696.1 438 IGRSKTSGTLSSSLSSASSTS 458
                     9**************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2085  (0.116292); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 3773.71
//
Query:       CCD22697.1  [L=315]
Description: hypothetical protein NDAI_0A05420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-69  230.1   6.2    4.8e-25   87.3   0.1    3.0  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.1   1.3e-27   2.3e-23       4      94 ..      19     113 ..      17     116 .. 0.90
   2 !   87.3   0.1   2.7e-29   4.8e-25       3      95 ..     122     217 ..     120     219 .. 0.92
   3 !   63.2   0.4     9e-22   1.6e-17       4      95 ..     223     311 ..     221     313 .. 0.90

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 1.3e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +++ ++l+Gg+++ava++++ P+++vK  +q+q ++ k+   ++    i+d++k++ k+eG+ +++rG+++n++r++p++al+f++ +++k ++ 
  CCD22697.1  19 NFAIDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGSLDSkysgIVDCFKRTAKQEGIVAFWRGNTANVIRYFPTQALNFAFKDKIKAMFG 113
                 67889***************************9998655444445566********************************************996 PP

  == domain 2  score: 87.3 bits;  conditional E-value: 2.7e-29
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS...HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa...ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 ++++ +l++Gg+ag ++ ++++ ld+++trl +++ksskk   ++   ++dv++k++k++G++glyrG+lp++++++++++l+f+ly+++k lll+
  CCD22697.1 122 KWFAGNLASGGMAGGLSLMFVYSLDYARTRLAADAKSSKKGSERQfngLVDVYRKTLKSDGVAGLYRGFLPSVVGIVVYRGLYFGLYDSVKPLLLT 217
                 57899****************************999987765555788*******************************************99975 PP

  == domain 3  score: 63.2 bits;  conditional E-value: 9e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 s+l+++l G++  ++a+++ +Pld+v+ r+++ ++++ k  +++++d+++ki+  eG+ +l++G+++n+lr +  +++  ++y++l+ +l+ 
  CCD22697.1 223 SFLASFLLGWVVTTGASTASYPLDTVRRRMMMTSGQAVK--YDGAFDCFRKIVAAEGVGSLFKGCGANILRGVAGAGV-ISMYDQLQMMLFG 311
                 7899****************************9999876..667*****************************65555.668**99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2414.92
//
Query:       CCD22698.1  [L=98]
Description: hypothetical protein NDAI_0A05430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00047   19.7   0.1    0.00077   19.0   0.1    1.3  1  Rep_1           Replication protein
      0.006   17.3   0.1       0.01   16.5   0.1    1.4  1  zinc_ribbon_15  zinc-ribbon family
     0.0092   15.9   2.9       0.69    9.9   0.2    2.4  2  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
  ------ inclusion threshold ------
      0.037   13.4   3.0        4.5    6.8   0.5    2.5  2  zf-ribbon_3     zinc-ribbon domain
      0.051   12.9   0.1       0.94    8.9   0.0    2.2  2  zf-TFIIB        Transcription factor zinc-finger
      0.061   12.9   2.5       0.46   10.1   2.5    2.1  1  RecR            RecR protein
        0.2   11.4   2.0        6.4    6.6   0.3    2.2  2  Zn_Tnp_IS1      InsA N-terminal domain
        0.3   10.7   3.7        3.3    7.3   0.4    2.6  2  TF_Zn_Ribbon    TFIIB zinc-binding
        3.5    8.0   7.6          8    6.8   1.7    2.4  2  zf-LITAF-like   LITAF-like zinc ribbon domain


Domain annotation for each model (and alignments):
>> Rep_1  Replication protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   3.9e-07   0.00077      11      36 ..      60      85 ..      55      93 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.9e-07
       Rep_1 11 kerlCPlCqwrrslklsaklakilee 36
                k+ +CP+C+wr+  k+  +l+kil e
  CCD22698.1 60 KQLHCPICNWRQDFKNDEQLQKILVE 85
                7789******************9965 PP

>> zinc_ribbon_15  zinc-ribbon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   5.2e-06      0.01       1      56 [.      27      82 ..      27      94 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.2e-06
  zinc_ribbon_15  1 ilCpkCgklskaelvkkkkvlklffipvfkwkkkkpylacskCk..slleaskelgke 56
                    i+Cp+C++  + + +k++++++l+ +p++++    + l+c  C+  + ++++++l+k 
      CCD22698.1 27 IYCPNCHN-FSVRPIKRREFVSLWWVPIVPLYW-GKQLHCPICNwrQDFKNDEQLQKI 82
                    68*****6.889999**************9999.7789*****944556666555544 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2   0.00035      0.69      19      35 ..      27      43 ..      21      49 .. 0.79
   2 !    6.4   0.2    0.0045       8.9      14      26 ..      57      69 ..      54      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00035
  Zn_Tnp_IS1595 19 fvCPhCgsrkayriktr 35
                     CP+C++ +++ ik+r
     CCD22698.1 27 IYCPNCHNFSVRPIKRR 43
                   45******999999985 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0045
  Zn_Tnp_IS1595 14 rWpngfvCPhCgs 26
                    W+   +CP C  
     CCD22698.1 57 YWGKQLHCPICNW 69
                   6**********75 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.5    0.0023       4.5       3      10 ..      27      34 ..      26      39 .. 0.74
   2 ?    6.5   0.1    0.0029       5.8       4      11 ..      63      71 ..      61      74 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0023
  zf-ribbon_3  3 vrCPnCGa 10
                 ++CPnC +
   CCD22698.1 27 IYCPNCHN 34
                 79***966 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0029
  zf-ribbon_3  4 rCPnCGa.p 11
                 +CP C++ +
   CCD22698.1 63 HCPICNWrQ 71
                 8****9966 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00047      0.94       1      17 [.      28      45 ..      28      49 .. 0.86
   2 ?    2.1   0.1      0.06   1.2e+02       1       6 [.      63      68 ..      63      86 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00047
    zf-TFIIB  1 kCPkCqd.eleeserggv 17
                +CP+C++ + ++++r+++
  CCD22698.1 28 YCPNCHNfSVRPIKRREF 45
                7*****999999999874 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.06
    zf-TFIIB  1 kCPkCq 6 
                +CP C+
  CCD22698.1 63 HCPICN 68
                799997 PP

>> RecR  RecR protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.5   0.00023      0.46      18      34 ..      28      67 ..      23      71 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00023
                E-TTT--EESSS.......................S-CCC CS
        RecR 18 hCsrCgnlteed.......................lCaIC 34
                +C++C+n++ +                         C+IC
  CCD22698.1 28 YCPNCHNFSVRPikrrefvslwwvpivplywgkqlHCPIC 67
                9********9988888888888888888888888778888 PP

>> Zn_Tnp_IS1  InsA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.3    0.0032       6.4       5      13 ..      26      34 ..      25      38 .. 0.83
   2 ?    4.2   0.1     0.018        36       6      12 ..      62      68 ..      61      76 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0032
  Zn_Tnp_IS1  5 sihCPrCss 13
                si CP C+ 
  CCD22698.1 26 SIYCPNCHN 34
                799****96 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.018
  Zn_Tnp_IS1  6 ihCPrCs 12
                 hCP C+
  CCD22698.1 62 LHCPICN 68
                6*****7 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.4    0.0016       3.3       2      21 ..      28      46 ..      27      46 .. 0.76
   2 ?    3.7   0.0     0.021        43       3      13 ..      64      75 ..      62      80 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0016
                  EETTTTCEECHEETSTTCEE CS
  TF_Zn_Ribbon  2 kCPnCgstnlveDpergelv 21
                   CPnC++   v++ +r e+v
    CCD22698.1 28 YCPNCHNF-SVRPIKRREFV 46
                  6*****73.38888888876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.021
                  ETTTTCEE.CHE CS
  TF_Zn_Ribbon  3 CPnCgstn.lve 13
                  CP+C+ ++ + +
    CCD22698.1 64 CPICNWRQdFKN 75
                  ****98774444 PP

>> zf-LITAF-like  LITAF-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   1.7     0.004         8      45      64 ..       5      34 ..       1      37 [. 0.62
   2 ?    3.3   0.5     0.052     1e+02       5      13 ..      61      69 ..      57      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.004
  zf-LITAF-like 45 iPfcv..........dslkdvehyCpnCga 64
                   iPf++          ++ +++  yCpnC++
     CCD22698.1  5 IPFVCginhydkeydNNPNHKSIYCPNCHN 34
                   555555555555555666677778888876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.052
  zf-LITAF-like  5 qvdCpaCqq 13
                   q++Cp+C+ 
     CCD22698.1 61 QLHCPICNW 69
                   789999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 695.21
//
Query:       CCD22699.1  [L=249]
Description: hypothetical protein NDAI_0A05440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1907.92
//
Query:       CCD22700.1  [L=424]
Description: hypothetical protein NDAI_0A05450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1541  (0.0859501); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3399.02
//
Query:       CCD22701.1  [L=111]
Description: hypothetical protein NDAI_0A05460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-17   63.8   6.5    1.3e-17   63.8   6.5    2.2  2  DUF2423   Protein of unknown function (DUF2423)


Domain annotation for each model (and alignments):
>> DUF2423  Protein of unknown function (DUF2423)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   6.5     7e-22   1.3e-17       1      43 [.       1      43 [.       1      44 [. 0.96
   2 ?   -0.6   2.4     0.089   1.6e+03       9      23 ..      95     109 ..      92     111 .] 0.69

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 7e-22
     DUF2423  1 MAKSlRSkskkraravkRksvFgpvedaRteRLsaKLkelakk 43
                MAKSlR+ks+++a+++kR+svF++++daR+ RL+++Lk+++ +
  CCD22701.1  1 MAKSLRAKSHLKAKSIKRRSVFQKIVDARESRLAERLKKDFVD 43
                **************************************99865 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.089
     DUF2423   9 skkraravkRksvFg 23 
                   k a++ k+k+ F 
  CCD22701.1  95 KNKIAKKAKKKGSFT 109
                 456677888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1187  (0.0662056); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 836.40
//
Query:       CCD22702.1  [L=189]
Description: hypothetical protein NDAI_0A05470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-58  196.7   9.4    1.8e-58  196.7   9.4    1.6  2  Ribosomal_L19e  Ribosomal protein L19e
  ------ inclusion threshold ------
      0.048   14.2   4.5         25    5.5   6.5    3.1  2  TilS            TilS substrate binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L19e  Ribosomal protein L19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   9.4     2e-62   1.8e-58       1     143 [.       3     145 ..       3     146 .. 0.99
   2 ?   -2.9   1.2       0.7   6.3e+03      55      66 ..     162     174 ..     149     183 .. 0.43

  Alignments for each domain:
  == domain 1  score: 196.7 bits;  conditional E-value: 2e-62
                     -THHHHHHHHHHTTS-GGGEEE-GGGHHHHHH--SHHHHHHHHHTTSEEE-------THHHHHHHHHHHTT-S-SGGG--S-HHHHS-HHHHHHH CS
  Ribosomal_L19e   1 dlklqkrlaasvlkvGknrvwldpeeleeiaeAitredirklikdglIikkpkkgnsrararerkekkrkgrrrgsGkrkGtkeaRlpekelWik 95 
                     +l++qkrlaasv++vGk +vwldp+e++ei++A++r++irklik+g+I+kk+++++sr+r+r+++ +kr+gr++g+GkrkGt+eaRlp++++Wi+
      CCD22702.1   3 NLRTQKRLAASVIGVGKGKVWLDPNETTEISQANSRNAIRKLIKNGTIVKKAVTVHSRSRTRAHALSKRNGRHTGYGKRKGTREARLPSQVVWIR 97 
                     689******************************************************************************************** PP

                     HHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHTT--SSHHHHHHHHT-X CS
  Ribosomal_L19e  96 riRalRrlLkelrekkkidkktYrelYrkakGgefknkavLkeyiekk 143
                     r+R+lRrlL ++r+++kidk+ Y+ lY++akG++fk+k++L e+i ++
      CCD22702.1  98 RLRVLRRLLAKYRDAGKIDKHLYHVLYKEAKGNAFKHKRALVEHIIQA 145
                     *********************************************987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.7
                     ---THHH.HHHHH CS
  Ribosomal_L19e  55 gnsrara.rerke 66 
                      +s+ ra rer++
      CCD22702.1 162 RRSKNRAaRERRA 174
                     3333332122222 PP

>> TilS  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.13   1.1e+03      21      44 ..      23      46 ..      21      51 .. 0.84
   2 ?    5.5   6.5    0.0028        25      32      65 ..     132     167 ..      91     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.13
                HHHHTTTT--HHHHHHH.HHHHH. CS
        TilS 21 WLaqlglpmpsaahLeellrqlll 44
                WL+ +   ++s+a  +  +r+l+ 
  CCD22702.1 23 WLDPNETTEISQANSRNAIRKLIK 46
                999999999999999999999984 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0028
                 HHHHHH.HHHHH.H-S-SEEEEE-ST..EEEEETTE CS
        TilS  32 aahLeellrqlllaaedaqpqldlpg..evrRyrgr 65 
                  +h ++l++++++a++d+q + +l++   vrR+ +r
  CCD22702.1 132 FKHKRALVEHIIQAKADSQREKALAEeaDVRRSKNR 167
                 4566777******************5599*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1247  (0.0695521); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1563.94
//
Query:       CCD22703.1  [L=481]
Description: hypothetical protein NDAI_0A05480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-26   89.8   0.6    1.7e-25   88.9   0.6    1.5  1  TEA       TEA/ATTS domain
  ------ inclusion threshold ------
      0.044   13.8   0.0       0.61   10.1   0.0    2.4  2  GP79      Gene product 79
       0.11   12.8   0.3       0.18   12.1   0.3    1.3  1  MCM6_C    MCM6 C-terminal winged-helix domain


Domain annotation for each model (and alignments):
>> TEA  TEA/ATTS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.9   0.6   2.8e-29   1.7e-25       2      67 ..      52     117 ..      51     118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 88.9 bits;  conditional E-value: 2.8e-29
         TEA   2 ekvWppeledafleallliPpmgrrklklegklhgRnelIseyIlkktgkertrKQvsShiQvlkk 67 
                  ++Wp ++e+af+eal+li ++g++k+k+++k +gRnelIs yI+++tg+ rt+KQ+sShiQv+kk
  CCD22703.1  52 HDKWPLKVENAFMEALQLIVKNGTSKIKIRNKNYGRNELISLYIKHHTGEVRTKKQISSHIQVWKK 117
                 589**************************************************************8 PP

>> GP79  Gene product 79
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0001      0.61      14      38 ..     197     221 ..     189     224 .. 0.86
   2 ?    0.2   0.0      0.13   7.5e+02      23      41 ..     285     303 ..     266     304 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0001
        GP79  14 dkvtfdqaeFPCeEDEvLGyAPeFG 38 
                 ++v+  q++FP  E+ v Gy P  G
  CCD22703.1 197 NQVGTLQSNFPTRENPVYGYVPVAG 221
                 678889****************766 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.13
        GP79  23 FPCeEDEvLGyAPeFGPDr 41 
                  PC++    G+    GPD 
  CCD22703.1 285 KPCNDSWSAGFVRATGPDN 303
                 49***************95 PP

>> MCM6_C  MCM6 C-terminal winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3     3e-05      0.18       9      84 ..      62     137 ..      57     172 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3e-05
      MCM6_C   9 kYveianllvlklreeeeeeeeegiekeeLvewYleqieeeleseeeleeekklvek.vlkrLvkdkvLlevreeae 84 
                  ++e  +l+v++  ++ +  +++ + ++eL++ Y++ +  e+ ++++++ + ++ +k +l+++  ++ L  ++++ +
  CCD22703.1  62 AFMEALQLIVKNGTSKIKI-RNKNYGRNELISLYIKHHTGEVRTKKQISSHIQVWKKsILNKISGEMELTPLDKQIL 137
                 5666677777776666666.77999**************************99987548888888888877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 3221.92
//
Query:       CCD22704.1  [L=147]
Description: hypothetical protein NDAI_0A05490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-52  175.2   0.0    5.7e-52  175.1   0.0    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
     0.0011   19.3   0.0     0.0016   18.7   0.0    1.3  1  RWD        RWD domain
      0.003   17.2   0.0     0.0038   16.9   0.0    1.2  1  Prok-E2_B  Prokaryotic E2 family B
     0.0097   15.8   0.0      0.015   15.1   0.0    1.3  1  UEV        UEV domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.1   0.0   1.3e-55   5.7e-52       1     139 [.       5     141 ..       5     142 .. 0.98

  Alignments for each domain:
  == domain 1  score: 175.1 bits;  conditional E-value: 1.3e-55
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltles 99 
                 r++kel+++ +++p+++sa++v d +l++w++ i+gp+d+pY+ggvF l+++fp+dYP+kpPk++f+tki+HPn++++G++cldiLk++ Wspaltl++
  CCD22704.1   5 RITKELSDMGRDPPTSCSAGPVGD-DLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ-WSPALTLSK 101
                 799********************8.**************************************************************77.********* PP

                 HHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con 100 vllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                 vllsi+sLl++ np++pl  e+a+ +k+dr +y+++++e+
  CCD22704.1 102 VLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREW 141
                 ************************************9986 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.6e-07    0.0016      55     113 ..      50     111 ..      28     113 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.6e-07
                 EEEEEEE-SSTTSS--EEEEEECC...SS-HHHHHHHHHHHHHHHHHT.TTS--CHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx RF
         RWD  55 lkleiklpeeYPeeaPiislsste...nlpkeqvksleekleelaeen.lgepvifalidwlk 113
                 + l i++p +YP ++P+is++++    n+ ++  + + + l+++++       v+ +++++l 
  CCD22704.1  50 FFLSIHFPTDYPFKPPKISFTTKIyhpNI-NANGNICLDILKDQWSPAlTLSKVLLSICSLLT 111
                 5689*******************944422.233334677888888877677777777777765 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   8.5e-07    0.0038      34     112 ..      46     118 ..      26     136 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.5e-07
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.egisgd 112
                  gg++ l + +p ++p+ pp+++ +        p in  +g +Cl       d+w p+ ++ +vl ++  +L+ +++ + 
  CCD22704.1  46 AGGVFFLSIHFPTDYPFKPPKISFTTKI---YHPNINA-NGNICL---DILKDQWSPALTLSKVLLSICSLLTdANPDDP 118
                 6899999****************99877...5788999.9*****...999**************999999996666554 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.4e-06     0.015      53     120 ..      53     115 ..      48     119 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.4e-06
                 EEE--TTTTTS--EEEE-GCC--TSGGGGGB-TTSBB--HHHHS.--TTT--HHHHHHHHHH-----XX CS
         UEV  53 liwvlesyPveaPivyvkptksmvikknenvdaqGlvylpyLee.WkreksnlvslvqelaqafeeesP 120
                  i  + +yP+++P +  + +       + n++a+G++ l++L++ W++ + +l++++ ++++  ++  P
  CCD22704.1  53 SIHFPTDYPFKPPKISFTTKIY-----HPNINANGNICLDILKDqWSP-ALTLSKVLLSICSLLTDANP 115
                 688899*******987765433.....559************862665.88888887777766665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1148.22
//
Query:       CCD22705.1  [L=248]
Description: hypothetical protein NDAI_0A05500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1971.44
//
Query:       CCD22706.1  [L=849]
Description: hypothetical protein NDAI_0A05510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-45  153.2   0.0    8.1e-45  152.1   0.0    1.6  1  Yos9_DD   Yos9 dimerzation domain
    7.6e-10   39.7   0.5    7.6e-10   39.7   0.5    3.5  4  PRKCSH    Glucosidase II beta subunit-like protein


Domain annotation for each model (and alignments):
>> Yos9_DD  Yos9 dimerzation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   0.0     9e-49   8.1e-45       2     128 .]     259     385 ..     258     385 .. 0.99

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 9e-49
                 HHHHCEEEEEEETTEEEEEE..SSTTS--EEEE--GGG-..-SSS--HHHHHHHHHHHHHHHHTT--B-TTS-B--TT-EEEEEEEEE-TT--EEEEEE CS
     Yos9_DD   2 dliskydpiFlgssvYlLepsnseeeeravlmytgklkkedeldeleeelykklgnalsrmltlklLklpdgsplevgDefeWiadivdlegnfltrlk 100
                 dl++++dpiFlg+s+YlL+p+++++e++a+lmyt++l++ + +d+++e+lyk+++ a+sr++tl+lL++pdgs+le+gD+f+Wia+ivd++g+ l+++k
  CCD22706.1 259 DLVTYFDPIFLGQSIYLLAPNGKNHEKKANLMYTEQLNDPSIWDSPTEVLYKAFTIAFSRVITLGLLHFPDGSKLENGDTFSWIAEIVDITGKPLSKIK 357
                 9************************************************************************************************** PP

                 EEE-SSS-EEEEEETT----T--SEEEE CS
     Yos9_DD 101 leiseskkaeilldktlefkekgNfvyy 128
                 ++++++ ++e+l++k+l + + gNf+yy
  CCD22706.1 358 VSTKHDGSMELLIYKDLPLLDVGNFEYY 385
                 ***************************9 PP

>> PRKCSH  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.5   8.4e-14   7.6e-10       1      81 []     111     180 ..     111     180 .. 0.88
   2 ?   -1.9   1.1      0.76   6.9e+03      26      58 ..     503     541 ..     491     582 .. 0.61
   3 ?   -2.5   0.5       1.2   1.1e+04      29      48 ..     621     644 ..     610     680 .. 0.50
   4 ?   -2.6   0.5       1.3   1.2e+04      57      57 ..     781     781 ..     742     811 .. 0.51

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 8.4e-14
                 X-EEEEEETTEEEEEETTTEEEEE-EETTEE-S--EEEEEE..EEEEEEE-------.....---S--EEEEEEEEE-SB- CS
      PRKCSH   1 gkCvsskegwwtYelCygkkvrQfhepekekgksevvLGrfnkeehsewaekneaksystedeekqsnryislkyenGtkC 81 
                 g Cv + +g+wtY++C++k+ +Qfhe  ++++  ++vLG+         +++  ++    +  +++  +y+    ++G++C
  CCD22706.1 111 GHCVGFRNGFWTYQFCPKKEFSQFHE-GNTDSSMIYVLGKP--------KKNLLKR--DFTLLYNDFGYYVNEVVGSGDIC 180
                 57************************.************88........3333333..48899999999999999999999 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.76
                 E.....ETTEE-S--EEEEEE..EEEEEEE-------.... CS
      PRKCSH  26 e.....pekekgksevvLGrfnkeehsewaekneaks...y 58 
                 +     +++e++k++v L   n++ ++  ++++++ +    
  CCD22706.1 503 AvndelHSEENPKNNVDLS--NEDVAQDNEQPTYDSAndtN 541
                 4445556677777777777..44444444444444443220 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.2
                 TEE-S--EEEEEE......EEEEE CS
      PRKCSH  29 kekgksevvLGrf....nkeehse 48 
                 ++ + ++ ++G      + +++se
  CCD22706.1 621 EDTTERQGNMGDNkhseEIQTSSE 644
                 444455555553322222222222 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1.3
                 - CS
      PRKCSH  57 s 57 
                 +
  CCD22706.1 781 E 781
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (849 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1503  (0.0838307); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.33s 00:00:01.19 Elapsed: 00:00:00.50
# Mc/sec: 5104.60
//
Query:       CCD22707.1  [L=427]
Description: hypothetical protein NDAI_0A05520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.3e-10   38.8   8.3     0.0089   16.1   0.0    5.2  5  Recep_L_domain  Receptor L domain
    0.00027   20.5   0.7      0.004   16.7   0.4    2.3  2  LRR_9           Leucine-rich repeat


Domain annotation for each model (and alignments):
>> Recep_L_domain  Receptor L domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     1e-06    0.0089       1      44 [.      45      80 ..      45      87 .. 0.88
   2 !    4.4   0.9    0.0042        38      27      98 ..      88     168 ..      84     173 .. 0.63
   3 ?    2.5   1.4     0.017   1.5e+02      52      86 ..     147     180 ..     135     232 .. 0.56
   4 !   11.7   0.1   2.4e-05      0.21      58      98 ..     239     278 ..     206     283 .. 0.75
   5 !    5.9   0.0    0.0015        13      20      62 ..     279     319 ..     274     334 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1e-06
                    TESEEESBEEEECCHCTSBGGGGGGGGG--EESS-EEEESET-S CS
  Recep_L_domain  1 nCtvieGnLeitltseneeeellsflsnveeitGyllikntnlk 44
                    +C++++GnL+it +  +        l+nv++i G+l+i n+  +
      CCD22707.1 45 GCETLYGNLTITGELGS------AALANVQKIDGSLKIFNA--T 80
                    7************9999......69**************98..3 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0042
                     GG--EESS-EEEESET-SSEGCGTT--EEESSSSBTT....TEEEEEES-TT-SBEE-TTTSEESS......SEEEEESETT CS
  Recep_L_domain  27 snveeitGyllikntnlkslsflenLrvIrgrelfes....kyalaildnknleeLglpslkeits......gsvviskNpk 98 
                     +++e itG l +++ ++     + +L+ + + +l+       +a +    +n+  ++ +sl+ +         +v++ +N++
      CCD22707.1  88 DSIESITGALDLQSLTILTSASFGSLKEVDSINLVTLpaitTFASNLETANNI-YISDTSLESVDGfsvlqsVNVFNINNNR 168
                     68999999999999988888889999999998888765445444444444443.3444444444333333336666666665 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.017
                     --EEESSSSBTTTEEEEEES-TT-SBEE-TTTSEE CS
  Recep_L_domain  52 LrvIrgrelfeskyalaildnknleeLglpslkei 86 
                     L+++ g ++ +s ++++i +n+ l++++ + lk++
      CCD22707.1 147 LESVDGFSVLQSVNVFNINNNRYLTSIKSS-LKTV 180
                     444444444444444444444444333321.2222 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 2.4e-05
                     SSSBTTTEEEEEES-TT-SBEE-TTTSEESSSEEEEESETT CS
  Recep_L_domain  58 relfeskyalaildnknleeLglpslkeitsgsvviskNpk 98 
                     ++l +   ++ +++n++l++L++p+l+ +   + v+ +N  
      CCD22707.1 239 SQLSKVGQTFTVVSNDELTKLQFPNLTAVGG-GFVVANNTA 278
                     4444446799*****************8876.555566655 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0015
                     GGGGGGGGG--EESS-EEEESET-SSEGCGTT--EEESSSSBT CS
  Recep_L_domain  20 eellsflsnveeitGyllikntnlkslsflenLrvIrgrelfe 62 
                      ++++ ++n+ ++ G ++++ + +++l+ l++L+++rg   fe
      CCD22707.1 279 LKTIDGFKNLSTVGGAIIVTGN-FTELD-LSSLKSVRGGADFE 319
                     466788999999****999999.88887.68899999877666 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4   4.5e-07     0.004      31      86 ..     124     180 ..     112     234 .. 0.86
   2 ?    1.3   0.0     0.023   2.1e+02      46      99 ..     249     301 ..     232     314 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.5e-07
       LRR_9  31 ipvienlGatldqfdtidlsdndirkldgfPllkrlktlllnnnri.vriaegleev 86 
                 +p i+ + + l+  + i +sd  +  +dgf  l+ ++++ +nnnr  + i+  l+ v
  CCD22707.1 124 LPAITTFASNLETANNIYISDTSLESVDGFSVLQSVNVFNINNNRYlTSIKSSLKTV 180
                 788999999999*********************************615677777665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.023
       LRR_9  46 tidlsdndirkldgfPllkrlk.tlllnnnrivriaegleevlPnleelvltnne 99 
                 t+ +s++++ kl+ fP l  +   ++++nn  +++ +g+++      ++++t+n 
  CCD22707.1 249 TV-VSNDELTKLQ-FPNLTAVGgGFVVANNTALKTIDGFKNLSTVGGAIIVTGNF 301
                 44.6888999995.99999997257889999999999999888777788888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1387  (0.0773607); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 2914.18
//
Query:       CCD22708.1  [L=273]
Description: hypothetical protein NDAI_0A05530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-45  151.8   0.0    1.4e-44  151.1   0.0    1.3  1  UQ_con     Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
       0.03   14.0   0.0       0.12   12.1   0.0    1.9  1  Prok-E2_B  Prokaryotic E2 family B


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.1   0.0   1.6e-48   1.4e-44       4     138 ..      14     162 ..      11     164 .. 0.91

  Alignments for each domain:
  == domain 1  score: 151.1 bits;  conditional E-value: 1.6e-48
                 HHHH..HHHHSTTTTEEEEEEETTEECEEEEEEEB..TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGS...........T CS
      UQ_con   4 kelk..elakkkpsgisaklvddenlfewkvlikgp.edtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLk...........e 88 
                 ++++  +  kk+ ++++ +l dd+nlf w++ ++   ed++Y+gg+Fk++++fped+P++pP+++f+  i+HPnv+++G++c++iL+            
  CCD22708.1  14 RQYRelTDPKKAIPSFHIELDDDSNLFVWNIGVMVLnEDSIYHGGYFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHqggdpmtdepdA 112
                 55552223578889999999999*******98877549*************************************************999999999987 PP

                 TT--TTSHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con  89 ekWspaltlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvke 138
                 e+Wsp++t+esvl+si+sLl++pn +sp+n++aa +++k++e+yk++vk+
  CCD22708.1 113 ETWSPVQTVESVLISIVSLLEDPNISSPANVDAAVDYRKNQEQYKQRVKM 162
                 77**********************************************86 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.3e-05      0.12      32     129 ..      55     154 ..      40     162 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.3e-05
   Prok-E2_B  32 ktsggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLCl.........lee.eldldewdpngsvadvleqlqqvLn.egisgdedaefag 119
                   +gg ++ ++ +p++fp++pp+ + +        p +++ +g LC          + + e d + w p ++v  vl ++  +L+  +is+     +++
  CCD22708.1  55 Y-HGGYFKAQMRFPEDFPFSPPQFRFTPAI---YHPNVYR-DGRLCIsilhqggdpM-TdEPDAETWSPVQTVESVLISIVSLLEdPNISSPA---NVD 144
                 3.9999999************988877655...4677888.9****74422222222.33678899***********9999999999****99...666 PP

   Prok-E2_B 120 EfqsYwesee 129
                  ++ Y +++e
  CCD22708.1 145 AAVDYRKNQE 154
                 6666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2048.59
//
Query:       CCD22709.1  [L=566]
Description: hypothetical protein NDAI_0A05540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-40  137.9   0.0      2e-40  137.9   0.0    2.4  3  Dfp1_Him1_M  Dfp1/Him1, central region
    2.5e-19   69.1   3.4    5.6e-19   68.0   3.4    1.6  1  zf-DBF       DBF zinc finger
  ------ inclusion threshold ------
      0.021   15.2   0.0      0.086   13.2   0.0    2.1  1  HHH_8        Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> Dfp1_Him1_M  Dfp1/Him1, central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   0.0   3.4e-44     2e-40       1     126 [.     169     290 ..     169     291 .. 0.96
   2 ?   -3.1   0.1       1.4   8.4e+03      17      43 ..     352     378 ..     351     393 .. 0.59
   3 ?   -3.1   0.2       1.5   8.8e+03      21      59 ..     454     493 ..     448     496 .. 0.52

  Alignments for each domain:
  == domain 1  score: 137.9 bits;  conditional E-value: 3.4e-44
  Dfp1_Him1_M   1 dilskArelkmkiWsleKlqrvLknllekdsekkkakaaakskaakeeedLsqlLkneklyGpsdrdptakrkdlhyFkgpyvlveDleqelrpiivr 98 
                  d+l++A++++mk+W ++K+ r+L+nl+ + ++ +++k+a +     ++++Ls+lL+neklyGpsdrdp+++r+d+hyFk+++v+++D +q ++pi++ 
   CCD22709.1 169 DLLRRAKRNYMKVWGYDKAVRFLRNLDIDIDNLQSNKEALM-----ATPTLSNLLHNEKLYGPSDRDPKTRRDDVHYFKYSHVYMYDSWQLWAPIVIL 261
                  89*****************************9999888764.....59************************************************** PP

  Dfp1_Him1_M  99 eykk.eakkekdgewPvlrsttegrcpFv 126
                  e+k+ ++ k ++ ++P+l+++t+grcpF+
   CCD22709.1 262 EWKPqDLAKLDELPYPTLKMGTFGRCPFI 290
                  **998999999*****************8 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.4
  Dfp1_Him1_M  17 eKlqrvLknllekdsekkkakaaaksk 43 
                  eK qr L++  ++ +e+kk +++++++
   CCD22709.1 352 EKWQRKLTTQISEPQEEKKLSNNKTNT 378
                  667777766666666555555555444 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.5
  Dfp1_Him1_M  21 rvLknllekdsekkkakaaakskaa.keeedLsqlLknek 59 
                  + L++l ++++  ++++a++++k++    + Ls+  knek
   CCD22709.1 454 QTLNKLVVDRKLGTRKHAQNSTKTTpIVGTPLSNQVKNEK 493
                  4555555555554444444444433445556666666665 PP

>> zf-DBF  DBF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   3.4   9.3e-23   5.6e-19       2      45 .]     519     562 ..     518     562 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 9.3e-23
      zf-DBF   2 ksGYCEnCrvkfedleeHlksekHrkFaenssnfeelDeliskl 45 
                 +sGYCEnC+vk+++le+H+ sekH +Fa+n+ nfe++D li+kl
  CCD22709.1 519 NSGYCENCKVKYDELEHHIVSEKHLAFAQNDLNFESIDCLIEKL 562
                 79***************************************997 PP

>> HHH_8  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.4e-05     0.086      13      46 ..     169     202 ..     161     214 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.4e-05
                 HHHHHCT--CCCHHHHHHHHCCCCC-SS-HHHHT CS
       HHH_8  13 dllelkgedpfrvraYrrAaraiealpeeitsle 46 
                 dll +++++ ++v  Y +A+r +++l+ +i++l+
  CCD22709.1 169 DLLRRAKRNYMKVWGYDKAVRFLRNLDIDIDNLQ 202
                 7899999************************983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4165.43
//
Query:       CCD22710.1  [L=326]
Description: hypothetical protein NDAI_0A05550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-25   87.9   0.0    1.6e-14   54.0   0.0    3.1  3  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.4e-09   4.3e-05       1      40 [.      28      70 ..      28      78 .. 0.91
   2 !    6.9   0.0   0.00025       4.4      44      66 ..     111     135 ..     104     145 .. 0.77
   3 !   54.0   0.0   9.1e-19   1.6e-14      67     185 ..     191     312 ..     186     320 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.4e-09
                EEEEE---BTTB--.......TT----B-HHHHHHHHHHHHHH CS
  His_Phos_1  1 lyLvRHGetewnaegr...lqgrtdvpLteeGreqAealaerl 40
                ++L+RHGe+e n++++   +   + +pLte+G  qA+ ++  l
  CCD22710.1 28 IVLIRHGESESNKDKKvneFTPNHLIPLTEKGWSQARHAGVEL 70
                79************99899999***************998766 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00025
                 ---EE..EE-SSHHHHHHHHHHHHC CS
  His_Phos_1  44 pidai..ysSplkRarqTaeliaea 66 
                 + + i  y+Sp+ R+r+T + +++ 
  CCD22710.1 111 KDRNIvfYTSPYTRTRETLKGMLDV 135
                 4455557***********9988765 PP

  == domain 3  score: 54.0 bits;  conditional E-value: 9.1e-19
                 TT--EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSE.......EEEEE-HHHHHHHHHHH CS
  His_Phos_1  67 lglpveldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarheget.......vlvVsHggvirallarl 158
                 l+ +v+ ++++rE dfG++++ ++ +   + ++++++++ + +     +gEs +dv +Rva++ e l ++ e+++       +++V+Hg   r++l+++
  CCD22710.1 191 LQYRVKDEPRIREQDFGNFQEVSSMQDVMKKRATYGHFFFRFP-----QGESAADVFDRVASFQETLFRHFEDKHsrkprdvIVLVTHGIYARVFLMKW 284
                 6778999***************999999999999999998877.....6****************88888888777788999***************** PP

                 HT--GGGGGGB--.-TT-EEEEEE-SS- CS
  His_Phos_1 159 lglpleelrrlel.dnaslsvlefdegg 185
                 +++ +ee++ +   +n s+ v+e+de  
  CCD22710.1 285 FRWTYEEFESFTNvPNGSMMVMELDETA 312
                 **********9988********999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2375.14
//
Query:       CCD22711.1  [L=248]
Description: hypothetical protein NDAI_0A05560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-90  302.0   0.1      3e-90  301.8   0.1    1.0  1  TIM       Triosephosphate isomerase


Domain annotation for each model (and alignments):
>> TIM  Triosephosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.8   0.1   1.7e-94     3e-90       2     243 .]       6     244 ..       5     244 .. 0.97

  Alignments for each domain:
  == domain 1  score: 301.8 bits;  conditional E-value: 1.7e-94
                 EEEEE-TBTS-HHHHHHHHHHHHHHCHGCTSEEEEE--GGGHHHHHHHHTTSSECEEES--BSSSSBS-TT--BHHHHHHTT-SEEEES-HHHHHHST- CS
         TIM   2 liagNwKmnktleeakellkklkaklkeekvevviappflylekvkklleesklklgaqnvsaeksGafTGevsaemlkdlgvkyviiGHsErrqlfkE 100
                 +++gN+K+n++++++ke++++l+++   e+vevvi+pp++yl+++ +l++++++++gaqn++ ++sGa+TGe s+e+lkd+g+k+vi+GHsErr++fkE
  CCD22711.1   6 FVGGNFKLNGSKTSIKEIVDRLNTASIPENVEVVICPPATYLDYTVSLVQKKQVSVGAQNTYVKASGAYTGENSVEQLKDVGAKWVILGHSERREYFKE 104
                 799******************66655556********************************************************************** PP

                 -HHHHHHHHHHHHHTT-EEEEEE---HHHHHTT.HHHHHHHHHHHHTTTS-CCCGGCEEEEE--GGGSSSS----HHHHHHHHHHHHHHHHHHSTHHHH CS
         TIM 101 tdelvakKvkaalksglkpilCvGEtleereagkteevvkeqlkeilkkldeealknvviAYePvWAiGtgktatpeqaqevhaairkelaekvskeva 199
                 +d++va+K+k+al++gl +ilC+GEtlee++ag t +vvk+ql++++++++  +++nvviAYeP+WAiG g  atpe+aqe+ha irk+la+k++ +va
  CCD22711.1 105 DDKFVAEKTKFALDNGLGVILCIGETLEEKKAGVTLDVVKRQLDAVIAEVK--DWTNVVIAYEPIWAIGSGLAATPEDAQEIHASIRKYLASKLGDKVA 201
                 ************************************************996..68******************************************** PP

                 TTSEEEEESS--TTTHHHHHTSTT--EEEESGGGCSHHHHHHHH CS
         TIM 200 ekirilYGGsvnkenakellkqkdidGlLvGgaslkaesFlkii 243
                 e++rilYGGs n +na ++ ++ d+dG+LvGgaslk+e F++ii
  CCD22711.1 202 EETRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPE-FVDII 244
                 ************************************98.**997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1855.45
//
Query:       CCD22712.1  [L=228]
Description: hypothetical protein NDAI_0A05570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-49  167.4   0.1    3.6e-49  167.1   0.1    1.1  1  Alg14     Oligosaccharide biosynthesis protein Alg14 like


Domain annotation for each model (and alignments):
>> Alg14  Oligosaccharide biosynthesis protein Alg14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.1   0.1     2e-53   3.6e-49       2     175 .]      51     227 ..      50     227 .. 0.94

  Alignments for each domain:
  == domain 1  score: 167.1 bits;  conditional E-value: 2e-53
       Alg14   2 lvvlGSGGHTaEmlrllkkl.ekeknikrtyvvssgDelSaekakelesskaeeeevelvkipraReVgqsylssifttllsllsaillvlrekr.... 95 
                  v+lGSGGH +Em+r+l+++ e   +++++++++++De S+ +++++ +s+ +   v+++k+ +aReV++++ +s++ ++++ll +++ v++++     
  CCD22712.1  51 SVFLGSGGHAGEMFRILENYrEFLLQKENVLYIGYSDEESRIRFEKTVRSQCK---VTYYKFLKAREVNAGFKNSFLGIIKTLLFSLFNVIHIRYcmlw 146
                 79******************767778888999***********9988888555...78********************************999988898 PP

       Alg14  96 lpdvilvNGPgtcvpvvlaalllkllallkrskivyvEslarvktlSLsGklllplaDrfvVqwpeLekk.ykkaeyvgll 175
                   +++l+NGPgtc+++vl+ ++++ll+ +++s++vy+Eslar+ tlSL+G+++++laD+f+Vqw++L+++  ++a+y+g+l
  CCD22712.1 147 KRHLVLLNGPGTCCILVLWFKVIELLFPISSSNVVYIESLARITTLSLTGRIVYWLADEFIVQWEDLKSHqAPRARYFGIL 227
                 89*****************************************************************987369******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1840.68
//
Query:       CCD22713.1  [L=208]
Description: hypothetical protein NDAI_0A05580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1607  (0.0896313); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1651.19
//
Query:       CCD22714.1  [L=215]
Description: hypothetical protein NDAI_0A05590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-21   76.9   1.4    1.6e-21   76.3   1.4    1.3  1  HSP20           Hsp20/alpha crystallin family
    4.2e-06   26.2   0.0    6.9e-06   25.5   0.0    1.4  1  ArsA_HSP20      HSP20-like domain found in ArsA
     0.0043   17.5   1.2      0.015   15.8   0.4    2.3  2  Pih1_fungal_CS  Fungal Pih1 CS domain
  ------ inclusion threshold ------
       0.12   12.4   0.2       0.12   12.4   0.2    2.1  3  YolD            YolD-like protein


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   1.4   3.6e-25   1.6e-21       1     101 [.      96     206 ..      96     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 3.6e-25
                 E--SSEEEEEEEEE-TT--.CCCEEEEEE..TTEEEEEEE--.....---TT----SS---EEEEEE--ST..TB-TTT-EEEEETTEEEEEEEBSS-- CS
       HSP20   1 dikeeeeefevkldvpglk.keelkvkve..dnrvlvkgehe...eeeedekglikerssrkFsrkftLPe..nvdadkvkaslkdGvLtvtvpkkepe 91 
                 di ++e+++e+k+ vpg+k k++++++++  dn+++v+g+ +    e ++ k+ ++er+s+kF+r +tLP   ++dad++ka++  GvLt+tvpk +++
  CCD22714.1  96 DILDHEKNYELKITVPGVKsKKDIDLEYHknDNQIIVSGQIPkisPESKKAKVKVNERASGKFKRIITLPGtpGIDADHIKADYTSGVLTLTVPKLKSN 194
                 6899***************788999999733667*******99988999*********************888************************99 PP

                 ....-------- CS
       HSP20  92 kk..kkerkiqi 101
                 k+  ++++ki+i
  CCD22714.1 195 KDekEHVQKIAI 206
                 886678888888 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.5e-09   6.9e-06       2      61 ..     102     186 ..     101     188 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.5e-09
  ArsA_HSP20   2 deyvlkldLPfv.dkeeidlsrs..gdeLtIkig.....................nfrRqitLP..svlarkevtsAkfedgvLeI 61 
                 ++y+lk+ +P+v +k++idl+ +  +++++++ +                     +f+R itLP    ++++++ +A +  gvL+ 
  CCD22714.1 102 KNYELKITVPGVkSKKDIDLEYHknDNQIIVSGQipkispeskkakvkvnerasgKFKRIITLPgtPGIDADHI-KADYTSGVLTL 186
                 68**********7778999965533778888888******************************4446****99.*********96 PP

>> Pih1_fungal_CS  Fungal Pih1 CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.4   3.3e-06     0.015      13      48 ..     100     134 ..      88     150 .. 0.86
   2 ?   -1.5   0.0      0.85   3.8e+03      54      70 ..     179     197 ..     173     211 .. 0.51

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.3e-06
  Pih1_fungal_CS  13 dtekykLrieieselesskdlevsYdakeneLiikn 48 
                     ++++y L+i +   ++s+kd++++Y++++n++i++ 
      CCD22714.1 100 HEKNYELKITVP-GVKSKKDIDLEYHKNDNQIIVSG 134
                     5679*****997.599*****************975 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.85
  Pih1_fungal_CS  54 ykekklkipLPnifke..e 70 
                     y++  l++ +P+  ++  e
      CCD22714.1 179 YTSGVLTLTVPKLKSNkdE 197
                     5555555555555444322 PP

>> YolD  YolD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.7   7.6e+03      67      86 ..      34      53 ..      32      55 .. 0.70
   2 ?   12.4   0.2   2.8e-05      0.12      23      88 ..      97     159 ..      86     164 .. 0.81
   3 ?   -1.9   0.1      0.81   3.7e+03       9      25 ..     191     207 ..     188     213 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.7
        YolD 67 delnkelkledeedeekkik 86
                 + +++l+  ++++++kk+ 
  CCD22714.1 34 SQKRQRLIGGNQDNNNKKVA 53
                56788888888887777665 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.8e-05
        YolD  23 eLDeqqleeineklqealeeeqpvtityyedgeleevtgyiekidelnkelkledeedeekkikls 88 
                 +LD ++  e++ ++   +++++++ ++y+++ +   v+g i ki +  k+ k++ +e+   + k++
  CCD22714.1  97 ILDHEKNYELKITV-PGVKSKKDIDLEYHKNDNQIIVSGQIPKISPESKKAKVKVNERA--SGKFK 159
                 67777777887777.678999****************************9999988754..34444 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.81
        YolD   9 lrelkeeqkkvekpeLD 25 
                 l+  k e+++v+k  ++
  CCD22714.1 191 LKSNKDEKEHVQKIAIS 207
                 66667777777776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1776.92
//
Query:       CCD22715.1  [L=636]
Description: hypothetical protein NDAI_0A05600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-57  194.1   0.3    2.5e-57  192.9   0.3    1.6  1  bVLRF1        bacteroidetes VLRF1 release factor
    0.00011   22.4   0.1     0.0007   19.8   0.0    2.2  2  Ank_5         Ankyrin repeats (many copies)
    0.00099   19.7   0.3     0.0031   18.1   0.3    1.8  1  Ank_2         Ankyrin repeats (3 copies)
     0.0063   16.9   0.1       0.21   12.2   0.1    2.7  2  Ank_3         Ankyrin repeat
  ------ inclusion threshold ------
      0.011   16.3   0.0      0.033   14.8   0.0    1.8  1  Ank_4         Ankyrin repeats (many copies)
      0.016   15.7   0.2       0.04   14.4   0.2    1.7  1  Ank           Ankyrin repeat
      0.021   15.2   0.7      0.048   14.1   0.7    1.7  1  zf-met        Zinc-finger of C2H2 type
       0.28   11.7   2.2       0.69   10.5   2.2    1.7  1  zf-C2H2       Zinc finger, C2H2 type
       0.36   11.5   2.8       0.65   10.7   0.1    2.9  3  zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats


Domain annotation for each model (and alignments):
>> bVLRF1  bacteroidetes VLRF1 release factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.9   0.3   1.3e-60   2.5e-57       2     145 ..     236     392 ..     235     396 .. 0.97

  Alignments for each domain:
  == domain 1  score: 192.9 bits;  conditional E-value: 1.3e-60
      bVLRF1   2 vllmlggGhfAgavvslkkkk...............eaevlahktfhrYttRrkqGgsQsandkakgkaksaGaslRryneqalkedirellkewkeei 85 
                 +l+m+ggGhfAga+vs+++++                +++++hktfhrYttRrkqGgsQsa+d+akgka+saG++lRryne+al++di++ll +w+ ++
  CCD22715.1 236 ALFMVGGGHFAGAIVSHQRANikgnakkqetsfqeqAVQFIEHKTFHRYTTRRKQGGSQSAMDNAKGKANSAGSTLRRYNEAALRTDIQNLLGTWAPYL 334
                 79**************99999**************999************************************************************* PP

      bVLRF1  86 ekselifirasgksnrkilfgyeeavlkkkdprlrsiPfttrrptlselkrvleeltrvk 145
                 +k+e if+ras+ ++++i+++  ++ +kk+d+rl+++Pftt rptl el + + elt++k
  CCD22715.1 335 SKCENIFLRASNVQDKQIFLE--NNNIKKDDERLKTFPFTTGRPTLGELRKSWCELTYLK 392
                 *******************98..667*******************************997 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         1   2.1e+03      24      43 ..     440     460 ..     431     461 .. 0.83
   2 !   19.8   0.0   3.5e-07    0.0007      18      56 .]     474     513 ..     467     513 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1
       Ank_5  24 akygaadvvrlLl.argadln 43 
                  k+g+a++++ +l ++ +d n
  CCD22715.1 440 LKKGRAPLLIAYLkKNKLDVN 460
                 4799999**999999988876 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 3.5e-07
       Ank_5  18 tpLhvAakygaadvvrlLl.argadlnltdsrGltaldlA 56 
                 t Lh+Aa+++  ++v +Ll ++ ad+ +++ +G+ta+d+A
  CCD22715.1 474 TLLHYAASHNLKQMVTILLsNMKADPCVKNQSGKTAWDMA 513
                 89************************************99 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.3   1.5e-06    0.0031      26      83 .]     443     503 ..     416     519 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.5e-06
       Ank_2  26 gktaLhyAakngnlei.vklLleh.ad.ndgrtpLhyAarsghleivklLlek.gadinlkd 83 
                 g+ +L +A  + n ++ v +Lle  a+  +  t LhyAa+++  ++v +Ll + +ad+ +k+
  CCD22715.1 443 GRAPLLIAYLKKN-KLdVNFLLEPtAKyISTPTLLHYAASHNLKQMVTILLSNmKADPCVKN 503
                 5556665555443.233666665322222233566666666666666666644466665553 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0       0.3     6e+02       2      25 ..     443     465 ..     442     469 .. 0.80
   2 !   12.2   0.1   0.00011      0.21       4      29 ..     474     499 ..     472     501 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.3
       Ank_3   2 GetpLhlAarsgnl.eivkfLlenk 25 
                 G+ pL +A +  n  + v fLle +
  CCD22715.1 443 GRAPLLIAYLKKNKlD-VNFLLE-P 465
                 7889999999999856.999999.5 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00011
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadv 29 
                 t+Lh+Aa+++   +v  Ll n+ ad+
  CCD22715.1 474 TLLHYAASHNLKQMVTILLSNMKADP 499
                 9*********************9997 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.7e-05     0.033       3      38 ..     474     509 ..     472     514 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
       Ank_4   3 taLhyaaisgrlelvrlLlek.gadinaqdnrsGeta 38 
                 t+Lhyaa+++  ++v +Ll++ +ad++   n sG ta
  CCD22715.1 474 TLLHYAASHNLKQMVTILLSNmKADPCVK-NQSGKTA 509
                 89*****************999****998.****998 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2     2e-05      0.04       4      31 ..     474     503 ..     474     504 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-05
                 BHHHHHHHHTTHHHHHHHHTT..TSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLLhG..Anlnald 31 
                 T LH+Aa+ + k+++  LL+   A++  ++
  CCD22715.1 474 TLLHYAASHNLKQMVTILLSNmkADPCVKN 503
                 89*****9999********43459998776 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.7   2.4e-05     0.048       1      21 [.      61      81 ..      61      85 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
      zf-met  1 fyCelCnvtfnsesqlksHlq 21
                f C++C+++f+++ + +sH+q
  CCD22715.1 61 FSCSICDTKFTDRPSQRSHYQ 81
                79******************9 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.2   0.00035      0.69       1      23 []      61      85 ..      61      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00035
                EEETTTTEEESSHHHHHHHHHC..C CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirt..H 23
                + C++C+ +F+++ + ++H++t  H
  CCD22715.1 61 FSCSICDTKFTDRPSQRSHYQTsfH 85
                89*****************998666 PP

>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00033      0.65      73     123 ..      32      82 ..       7      86 .. 0.73
   2 ?   -4.1   0.3         9   1.8e+04      76      86 ..     127     137 ..     109     153 .. 0.44
   3 ?   -1.7   0.0       2.1   4.3e+03      60     110 ..     342     392 ..     330     394 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00033
  zf-C2H2_3rep  73 asedssqklelsksasvennsenesgvrkfvcrfcGlkfdllpdlGrhhqa 123
                   ++e+   ++ +sk+ + en+ ++++ ++ f+c +c  kf   p    h+q+
    CCD22715.1  32 EAENNDVEQTTSKIIQEENEGKKKNISNSFSCSICDTKFTDRPSQRSHYQT 82 
                   34444444444444444566778888999***********99999999997 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 9
  zf-C2H2_3rep  76 dssqklelsks 86 
                   ds+++le+ + 
    CCD22715.1 127 DSESELEQIDE 137
                   22222222221 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.1
  zf-C2H2_3rep  60 fklskvaqkknlsasedssqklelsksasvennsenesgvrkfvcrfcGlk 110
                   ++ s+v++k+   ++++ +++ e  k+   ++     + +rk  c +  lk
    CCD22715.1 342 LRASNVQDKQIFLENNNIKKDDERLKTFPFTTGRPTLGELRKSWCELTYLK 392
                   578888888888888888888999999888888888999999999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1583  (0.0882927); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4770.69
//
Query:       CCD22716.1  [L=366]
Description: hypothetical protein NDAI_0A05610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-126  421.9   0.0   2.1e-126  421.7   0.0    1.0  1  URO-D     Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> URO-D  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.7   0.0  1.2e-130  2.1e-126       2     345 ..      12     362 ..      11     363 .. 0.97

  Alignments for each domain:
  == domain 1  score: 421.7 bits;  conditional E-value: 1.2e-130
                 ---HHHHHHTT---SS--B--TT-SSTTSHHHHHHHTSSSHHHHHH-HHHHHHHHHHHHHHH-..-S-EE-S--TTGGGGGGT-EEEEETTTEEEEE-- CS
       URO-D   2 knerllralrgekvdrvPvwlmRqaGrylpeyraeragvsflelcknpelaaevtlqpvrrfg..lDaailfsdilveaealGlevefeegegPvvekp 98 
                 kn++llr+lrge+v+r+P+w+mRqaGrylpey++++ + +f+e c+n+e a+e+t+qp+r+f+  +Daai+fsdilv+++a+G++ve+ eg+gP++++p
  CCD22716.1  12 KNDLLLRTLRGEQVERPPCWIMRQAGRYLPEYHEVKGKRDFFETCRNAEIASEITIQPIRHFKglIDAAIIFSDILVIPQAMGMKVEMIEGKGPSFPRP 110
                 89************************************************************************************************* PP

                 S-....GGGS----GGG.G..HHHHHHHHHHHHH.--SS-EEEEEE-HHHHHHHHHCTT.-SS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHT CS
       URO-D  99 vrtaedveklevpddveegrlpyvleaikllkkelggevpligfvgaPftlasylveGg.skgfekllkllykdpeevhklldkltdvvieylkaqiea 196
                 +rt+++v+k+  +++  +++l++ +++i+l++++l+gevpl+gf+g+P+tl+ y+ eGg s+ f+ ++++++++p++ +kll+k+tdv +e+l++q++a
  CCD22716.1 111 LRTVDEVQKVLDYQVDVLKELDWAFKSISLTRTKLDGEVPLFGFCGGPWTLLVYMSEGGgSHLFRFAKQWINEHPDLSKKLLQKITDVAVEFLCQQVAA 209
                 ********998887754599******************************************************************************* PP

                 T-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHH.H-......-S-EEEEESSHH.HHHHHHTTS--SEEE--TTS-HHHHHHSS....EEE--B- CS
       URO-D 197 gAdaiqifDswagllspedfeefvlpylkrivdevkaegp......kvpvilfikgagaeiledlaelgadvlsldwtvdlkeaarevgdkvalqGnld 289
                 gA+++q+f+sw+g ls  df+ef+lpylk+i ++v+++ +      ++p+i+f+k+++ + l++l++l++d++sldw++d+k+a +  + +v+lqGnld
  CCD22716.1 210 GAQVLQVFESWGGELSSMDFDEFSLPYLKQISEKVPKRLQglgineHIPIIVFAKNSW-YALDKLCSLNFDAVSLDWSWDPKQALAINKGRVTLQGNLD 307
                 **********************************************************.9*********************666666669********* PP

                 G.GGGGS-HHHHHHHHHHHHT.T---SSSEEB-BSS---TTS-HHHHHHHHHHHHT CS
       URO-D 290 PialLlgspeeiekevkeilekgaggkkgyilnlGhgippetppenvkalveavke 345
                 P  +++gs+e+i k+v  +++   ggkk+yi+n+Ghg++p ++pe+++ +++ +++
  CCD22716.1 308 P-GVMYGSKETITKKVAYMIDRFGGGKKNYIVNFGHGTSPFMDPEQIRFFLQECHR 362
                 *.9******************77799***************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2662.48
//
Query:       CCD22717.1  [L=571]
Description: hypothetical protein NDAI_0A05620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.6e-133  445.8  35.5     2e-133  445.5  35.5    1.0  1  AA_permease    Amino acid permease
    2.1e-33  115.8  33.5    2.8e-33  115.4  33.5    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.5  35.5  2.2e-137    2e-133       1     473 [.      61     523 ..      61     527 .. 0.98

  Alignments for each domain:
  == domain 1  score: 445.5 bits;  conditional E-value: 2.2e-137
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswitvlaleltaa 97 
                  hv+++++g  iGtgl+v++++ l   Gp++++++y+l+ +v+++++++ ge+a+++p   g+f+ y s f+++ +Gf++ ++++++w+tv++lel++a
   CCD22717.1  61 HVVMMSIGTGIGTGLLVANAKGLYFSGPASLIIGYVLVSFVTYFMIQAAGEMAVAYPtLPGSFNSYTSTFISKPFGFATVWLFFIQWLTVFPLELITA 158
                  9************************************************************************************************* PP

  AA_permease  98 siliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakee 194
                  s ++++w  +++++ a+v++++f+++ll+i+++gvk+yge+efi++++k++++++fii++i++++gg++++g+ g+++++d+gs+++   +       
   CCD22717.1 159 SLTVKYW--NDKIN-ADVFIIIFYAFLLFIHFFGVKAYGETEFIFNSCKVLMVAGFIILSIVINCGGAGTDGYiGAKYWHDPGSFADGPPITR----- 248
                  *******..*****.*********************************************************************666666666..... PP

  AA_permease 195 egafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa..aspfvifikesgvsvlap 290
                     fk++++++v ++f++ G el  +   E ++P+ks P a +q ++ri+i+Y+  ++lig+ vp n++ l+ +   a  asp+v++ + + v+v+++
   CCD22717.1 249 ---FKGVCFILVSAYFSYGGAELFSLSVNEQENPRKSTPAAAKQSIYRILIIYLATMILIGFNVPHNSDELMGAGSAAthASPYVLAASLHSVKVVPH 343
                  ...*********************************************************************97776699****************** PP

  AA_permease 291 linaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl 388
                  +inavil++++s+ans+ly+a+R+++sla++g+aPk+l++v+++g+Plr+++l++++++++++ as++ +  +vf++l ai++l+ l++w  i+ls++
   CCD22717.1 344 FINAVILISVISVANSALYAAPRLMCSLAEQGYAPKFLNYVDREGRPLRGLILCALFGVIGFVSASSKEE--EVFTWLAAIAGLSELFTWSGIMLSHI 439
                  **********************************************************************..************************** PP

  AA_permease 389 rfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                  rfR+a+k +g+s++e+gfka ++++g++++ a++i+++++++++a+ + ++++++ +a+ f+++yl ++++l++++g++++++ +
   CCD22717.1 440 RFRQAMKFNGKSTDEIGFKAVTGIWGSYYGCAFNILVFIAQFWVALSP-PGSGGKCDAEAFFQSYLAAPIWLVFYFGYMIYKRDF 523
                  ********************************************9999.9999999*************************9975 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4  33.5   3.2e-37   2.8e-33       5     405 ..      61     483 ..      58     494 .. 0.80

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 3.2e-37
  AA_permease_2   5 safalvigsvigsgifvkn..laasggpa..lilwvwiavligslavllvyaElssa.lprsgGiyvytkaafgkkvaflsawfnwfayvpvlasi 95 
                     +++++ig+ ig+g +v+n  +++  gpa  +i +v+++ + +   ++ +  E++ a +   g   +yt+ +++k+++f ++w+++++++ v+++ 
     CCD22717.1  61 HVVMMSIGTGIGTGLLVANakGLYFSGPAslIIGYVLVSFVTY--FMIQAAGEMAVAyPTLPGSFNSYTSTFISKPFGFATVWLFFIQWLTVFPLE 154
                    5789**************9984444555542555555555555..5666666776554888999999****************************9 PP

  AA_permease_2  96 lsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl...stetdt..ffpng 186
                    l+ a  +  + ++ +++ +     +++i++++++ +i+ +g+k ++   +i   +k+ l+++ +iil +++ +gg  ++       ++   +f++g
     CCD22717.1 155 LITASLTVKY-WNDKINAD-----VFIIIFYAFLLFIHFFGVKAYGETEFIFNSCKV-LMVAGFIILSIVINCGGAGTDGyigAKYWHDpgSFADG 243
                    9999998888.66677554.....6778999999***********************.68899999999999999999888774444445578888 PP

  AA_permease_2 187 wpg.....vllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei.......anlsnlgsvaalffeavg 268
                     p+     v + l  + +s++G e  +  ++e+++  k +p a+  ++  +l++yl ++i++ + vp ++        a ++ +++v+a+ ++   
     CCD22717.1 244 PPItrfkgVCFILVSAYFSYGGAELFSLSVNEQENprKSTPAAAKQSIYRILIIYLATMILIGFNVPHNSDelmgagsAATHASPYVLAASLHS-- 337
                    885332335778888*****************7666478****************************965434775543444455445555555.. PP

  AA_permease_2 269 gkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgliisy 362
                     kvv ++++++i +s++  +n+a+++++r++ +la++g+ P+f++ v++ g+p+r++il a++ +i +  ++++s  ++ +++l++++ l+ ++ +
     CCD22717.1 338 VKVVPHFINAVILISVISVANSALYAAPRLMCSLAEQGYAPKFLNYVDREGRPLRGLILCALFGVIGF--VSASSkeEEVFTWLAAIAGLSELFTW 431
                    46**************************************************************7665..4455568****************999 PP

  AA_permease_2 363 llliigalilrkkrphlkr....pgk......ilvaiigalfllfllvalffp 405
                      ++++ +  r  ++  ++    +g+      +  +  g+ f++++++a f++
     CCD22717.1 432 SGIMLSHIRFRQAMKFNGKstdeIGFkavtgiW-GSYYGCAFNILVFIAQFWV 483
                    999999999998888888878895542233313.3333477777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4238.48
//
Query:       CCD22718.1  [L=110]
Description: hypothetical protein NDAI_0A05630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-21   76.1   2.2    1.3e-21   76.1   2.2    2.9  2  TFIIS_C         Transcription factor S-II (TFIIS)
    4.5e-17   61.6   1.6    1.5e-16   60.0   0.3    2.3  2  RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
    0.00094   19.1   4.7       0.34   10.9   0.6    2.4  2  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
  ------ inclusion threshold ------
      0.067   13.2   0.4      0.067   13.2   0.4    3.0  3  PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
       0.15   12.3   9.8       0.63   10.3   0.2    2.7  2  IBR             IBR domain, a half RING-finger domain
       0.55   10.3   6.4       0.76    9.8   0.3    2.6  2  DZR             Double zinc ribbon


Domain annotation for each model (and alignments):
>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   4.0      0.43   1.3e+03       3       9 ..       5      11 ..       3      33 .. 0.71
   2 !   76.1   2.2   4.5e-25   1.3e-21       2      39 .]      68     108 ..      67     108 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.43
     TFIIS_C  3 CpkCgsr 9 
                Cp+C++ 
  CCD22718.1  5 CPSCNNM 11
                7888764 PP

  == domain 2  score: 76.1 bits;  conditional E-value: 4.5e-25
     TFIIS_C   2 kCpk...CgsreayffqlQtRsaDEpmtvfykCtkCghrWr 39 
                 +Cp+   Cg++ ayffqlQ+RsaDEpmt+fykC++C hrW+
  CCD22718.1  68 QCPNyekCGGESAYFFQLQIRSADEPMTTFYKCVNCAHRWK 108
                 8997777*********************************7 PP

>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.3     5e-20   1.5e-16       1      35 [.       2      37 ..       2      38 .. 0.96
   2 ?    0.1   0.0      0.25   7.6e+02      21      27 ..      95     103 ..      85     105 .. 0.66

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 5e-20
                    EEBESTTTSBEEEEECSCCCE.EEESSSS-EEESSC CS
  RNA_POL_M_15KD  1 lkFCpkCgNlLlpkedkegkn.feCrqCgYeepadq 35
                    l+FCp+C+N+Ll++++++g++ + Cr+C+Ye+p+++
      CCD22718.1  2 LSFCPSCNNMLLITTADSGVYtLTCRSCPYEFPIEG 37
                    79********************************96 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.25
                     E..EEESSS CS
  RNA_POL_M_15KD  21 n..feCrqC 27 
                        + C +C
      CCD22718.1  95 TtfYKCVNC 103
                     336899999 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.3   0.00025      0.76      21      45 ..       5      31 ..       3      32 .. 0.81
   2 !   10.9   0.6   0.00011      0.34      18      45 ..      66     105 ..      58     106 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00025
  Zn_Tnp_IS1595 21 CPhCgsrkayrikt..rglfqCkeCrk 45
                   CP C ++ ++++++     + C++C +
     CCD22718.1  5 CPSCNNMLLITTADsgVYTLTCRSCPY 31
                   *******99999995566668****66 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
  Zn_Tnp_IS1595  18 gfvCP...hCgsrkayrikt.........rglfqCkeCrk 45 
                    ++ CP   +Cg+++ay+++             ++C  C +
     CCD22718.1  66 KVQCPnyeKCGGESAYFFQLqirsadepmTTFYKCVNCAH 105
                    467994445********999999***************88 PP

>> PhnA_Zn_Ribbon  PhnA Zinc-Ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.4     0.051   1.5e+02       2       9 ..       2       9 ..       1      10 [. 0.75
   2 ?   -0.2   0.0      0.33   9.8e+02      20      29 ..      24      33 ..      22      34 .. 0.79
   3 ?   13.2   0.4   2.2e-05     0.067       6      29 ..      73     107 ..      68     108 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.051
  PhnA_Zn_Ribbon 2 lpkCplCa 9
                   l+ Cp C+
      CCD22718.1 2 LSFCPSCN 9
                   67788887 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.33
  PhnA_Zn_Ribbon 20 lvCpeCahEw 29
                    l C  C +E+
      CCD22718.1 24 LTCRSCPYEF 33
                    5699999997 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 2.2e-05
  PhnA_Zn_Ribbon   6 plCaSeytY...........edgallvCpeCahEw 29 
                     ++C+ e++Y             ++ + C +Cah w
      CCD22718.1  73 EKCGGESAYffqlqirsadePMTTFYKCVNCAHRW 107
                     89*******************************99 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00021      0.63      19      48 ..       3      33 ..       1      35 [. 0.74
   2 ?    4.2   4.4     0.017        52      15      56 ..      63     107 ..      59     110 .] 0.51

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00021
         IBR 19 kwCprpdCeaii...eksegcksvtCskCgfef 48
                  Cp   C++++     ++g  ++tC++C +ef
  CCD22718.1  3 SFCP--SCNNMLlitTADSGVYTLTCRSCPYEF 33
                68*9..9**9886433333355689******99 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.017
         IBR  15 dpnlkwCprp.dCe..aii.....ekseg..cksvtCskCgfefCfnCkkew 56 
                 d+++++Cp+  +C+  +++                  +   f  C+nC + w
  CCD22718.1  63 DQTKVQCPNYeKCGgeSAYffqlqI---RsaD----EPMTTFYKCVNCAHRW 107
                 7788999976699965333333331...2211....1223344455555555 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.3   0.00025      0.76      14      38 ..       4      33 ..       2      37 .. 0.82
   2 ?    2.9   1.4     0.038   1.1e+02      27      37 ..      92     106 ..      59     110 .] 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00025
         DZR 14 fCseCgtklkavaa.....edrCpsCgekv 38
                fC+ C++ l  ++a       +C sC ++ 
  CCD22718.1  4 FCPSCNNMLLITTAdsgvyTLTCRSCPYEF 33
                9*******8766668999999999998765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.038
         DZR  27 a....edrCpsCgek 37 
                 +     ++C++C + 
  CCD22718.1  92 EpmttFYKCVNCAHR 106
                 155557899999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 836.50
//
Query:       CCD22719.1  [L=327]
Description: hypothetical protein NDAI_0A05640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.5e-130  433.5   0.0   2.8e-130  433.3   0.0    1.0  1  Coprogen_oxidas  Coproporphyrinogen III oxidase


Domain annotation for each model (and alignments):
>> Coprogen_oxidas  Coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.3   0.0  1.6e-134  2.8e-130       1     295 [.      15     326 ..      15     327 .] 0.98

  Alignments for each domain:
  == domain 1  score: 433.3 bits;  conditional E-value: 1.6e-134
  Coprogen_oxidas   1 kveellkelqdeivkaleeldgkakfkedeweree.ggggisrvledgkvfekagvnvsvvegklpesavkqmraekk............eele 81 
                      ++e+l+++ q+ei+k le++d + kf++d+w+r + gggg+s+v+++g++fek+gvn+svv+g+l++  + +m++++k            + +e
       CCD22719.1  15 QMEALIRRKQAEITKGLESVD-TVKFQADTWTRGNdGGGGTSMVIQNGSTFEKGGVNISVVYGDLTAGGIMAMKNDHKdlelpvdsetglPVAE 107
                      6999*****************.99*********9889****************************************9********99998899 PP

  Coprogen_oxidas  82 eleffaagvslvihprnPlvPtvhlnyryfeaee...kkkawWFgGgaDLtPsylfeedavhfHktlkeacdkhdkelypkfKkwcDeyFyikh 172
                      +++ffa+g+s+vihp+nP++Pt+hlnyryfe+ +   ++++wWFgGgaDLtPsyl+eeda+ fH+ +kea+dkhd++lypkfKkw+DeyFyi h
       CCD22719.1 108 GVKFFACGLSMVIHPKNPHCPTTHLNYRYFETWKadgTPQTWWFGGGADLTPSYLYEEDAKLFHRLHKEALDKHDTALYPKFKKWADEYFYIAH 201
                      9*******************************99777689****************************************************** PP

  Coprogen_oxidas 173 RkeaRGvGGiffddlk.esaeelfafvksvgeaflpaYlpivekrkdtpyteeerewqllrrgryveFnLvyDrGtkfGLqte.grvesiLmsl 264
                      Rke+RG+GG ffdd++ ++ +e+++++++  +aflp+Y+pi++krkd p+teee++wql+rrgryve+nL+yDrGt+fGL+t+ +rvesiLmsl
       CCD22719.1 202 RKETRGIGGTFFDDFNdRDPQEILKICEDSFDAFLPSYIPIIQKRKDLPFTEEEKKWQLIRRGRYVEYNLIYDRGTQFGLRTPgSRVESILMSL 295
                      ***************94559***************************************************************9********** PP

  Coprogen_oxidas 265 PptarweyelepeegseeaellevlkkpreW 295
                      P++a+w y+++pe+gs+ea+llev ++p eW
       CCD22719.1 296 PEHASWLYNHHPEPGSREARLLEVTTNPIEW 326
                      ******************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2395.17
//
Query:       CCD22720.1  [L=330]
Description: hypothetical protein NDAI_0A05650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00036   20.8  17.9    0.00055   20.3   1.6    2.8  2  zf-C2H2    Zinc finger, C2H2 type
     0.0055   17.1  14.5     0.0084   16.5   3.3    3.2  3  zf-H2C2_2  Zinc-finger double domain
  ------ inclusion threshold ------
      0.075   13.9   1.0      0.075   13.9   1.0    2.7  2  zf-C2H2_4  C2H2-type zinc finger
       0.17   12.3   0.2       0.17   12.3   0.2    3.1  3  zf-met     Zinc-finger of C2H2 type
        0.5    9.7   3.0       0.36   10.2   0.4    2.0  3  DUF2895    Protein of unknown function (DUF2895)


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   1.6   1.5e-07   0.00055       1      23 []     270     292 ..     270     292 .. 0.95
   2 !    5.2   8.9    0.0092        33       2      23 .]     299     322 ..     298     322 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.5e-07
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y C++C+k F+++ +L rH r+H
  CCD22720.1 270 YLCKVCSKGFTTSGHLARHNRIH 292
                 66*******************99 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0092
                 EET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirtH 23 
                  C+  +C+++F+r +n  +H+rtH
  CCD22720.1 299 ACHfaGCTQKFSRHDNCLQHYRTH 322
                 6**********************9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.4    0.0016       5.7      14      26 .]     269     281 ..     264     281 .. 0.85
   2 !   16.5   3.3   2.3e-06    0.0084       1      25 [.     284     310 ..     284     311 .. 0.86
   3 ?   -1.7   0.2       1.4   4.9e+03       5      11 ..     318     324 ..     315     329 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0016
   zf-H2C2_2  14 pyeCplCdkaFkt 26 
                 +y C++C+k F+t
  CCD22720.1 269 KYLCKVCSKGFTT 281
                 599********97 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.3e-06
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 +L rH r Htgek + C    C  +F+
  CCD22720.1 284 HLARHNRIHTGEKSHACHfaGCTQKFS 310
                 699***************644888886 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.4
   zf-H2C2_2   5 HirkHtg 11 
                 H r+H +
  CCD22720.1 318 HYRTHFK 324
                 7777754 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.0   2.1e-05     0.075       1      19 [.     270     288 ..     270     292 .. 0.91
   2 ?    3.5   7.5     0.046   1.7e+02       2      23 ..     299     322 ..     298     323 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.1e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrH 19 
                 + C++C+k F+++ +L rH
  CCD22720.1 270 YLCKVCSKGFTTSGHLARH 288
                 78****************9 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.046
   zf-C2H2_4   2 kCpi..CgksFsskkaLlrHlkth 23 
                  C++  C++ Fs++++ l+H +th
  CCD22720.1 299 ACHFagCTQKFSRHDNCLQHYRTH 322
                 799999*****************9 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   4.7e-05      0.17       3      21 ..     272     290 ..     269     293 .. 0.88
   2 ?    0.7   0.1      0.21   7.5e+02       7      22 ..     289     304 ..     289     304 .. 0.90
   3 ?   -0.5   0.5       0.5   1.8e+03      12      21 ..     311     320 ..     305     327 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.7e-05
      zf-met   3 CelCnvtfnsesqlksHlq 21 
                 C++C + f+  ++l  H +
  CCD22720.1 272 CKVCSKGFTTSGHLARHNR 290
                 *****************76 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.21
      zf-met   7 nvtfnsesqlksHlqG 22 
                 n+ +++e++  +H++G
  CCD22720.1 289 NRIHTGEKSHACHFAG 304
                 7889*********987 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.5
      zf-met  12 sesqlksHlq 21 
                    +  +H++
  CCD22720.1 311 RHDNCLQHYR 320
                 5555556665 PP

>> DUF2895  Protein of unknown function (DUF2895)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.48   1.7e+03      81     118 ..      25      63 ..      22      76 .. 0.76
   2 ?   -3.6   0.0       1.7     6e+03      60      74 ..     121     135 ..     114     148 .. 0.73
   3 ?   10.2   0.4    0.0001      0.36      94     134 ..     242     282 ..     233     294 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.48
     DUF2895  81 eedYkqnikrlsaylTprck.eqlekdyeerkkrgeLkk 118
                 ++ Y++ i++l+++l + ++ +++e+d++++ +r  L++
  CCD22720.1  25 KHHYENPIRKLNTLLPRLMNiKMVEDDLKTKLDRCSLNS 63 
                 678999999999999887652567888898888887765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.7
     DUF2895  60 esvyaFafyifqqln 74 
                 +++y+F+  i++  n
  CCD22720.1 121 QEIYQFSPAILPAQN 135
                 689999999876555 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.0001
     DUF2895  94 ylTprckeqlekdyeerkkrgeLkkrvrvvseipgrgysee 134
                  lT+r ++ l+k++e+r+ +++L++r + + ++ ++g++++
  CCD22720.1 242 RLTKRERALLQKEVEKRRIEEDLEHRRKYLCKVCSKGFTTS 282
                 59***********************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1283  (0.07156); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2529.48
//
Query:       CCD22721.1  [L=192]
Description: hypothetical protein NDAI_0A05660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.04   14.4   1.1      0.073   13.6   0.0    1.9  3  DUF2718   Protein of unknown function (DUF2718)
       0.15   12.4   0.9         18    5.8   0.0    2.2  2  FtsH_ext  FtsH Extracellular


Domain annotation for each model (and alignments):
>> DUF2718  Protein of unknown function (DUF2718)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.2     1e+04      22      34 ..       6      18 ..       4      27 .. 0.73
   2 ?   -1.6   0.3      0.39   3.5e+03       4      23 ..      22      41 ..      16      66 .. 0.77
   3 ?   13.6   0.0   8.2e-06     0.073      24     120 ..      78     175 ..      70     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
     DUF2718 22 lmyplkklisflf 34
                l+  +k +is +f
  CCD22721.1  6 LLCSIKAIISVMF 18
                5566788888887 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.39
     DUF2718  4 ifylsrllnliiyslysllm 23
                +f  s l  ++  ++y+l++
  CCD22721.1 22 LFIFSLLSQIVTNGIYKLTI 41
                45566677788888888865 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 8.2e-06
     DUF2718  24 yplkklisflfGelnpfndvlpdpkkdddavivpddlppepkekikekdn..gagvvekaikteen.elngvldflkipnpfkrytetykscssyplkk 119
                 + +  l+ flf  + p+ +++  p kd+    +++d+  + k  i +++   g++ ++++     + ++   l+ +k+ n  +ry    ++ + yp+ k
  CCD22721.1  78 FHIASLMVFLFLSYMPIIHMETSP-KDELLNALQEDVKNQQKSSILKHHHliGNNFIDDTHTEVIEyKFSPHLKAIKLSNSKRRYGPVVNQQH-YPMIK 174
                 778999************977766.6888999******9999998655533378888877655444499****************77777766.88866 PP

     DUF2718 120 a 120
                 +
  CCD22721.1 175 T 175
                 4 PP

>> FtsH_ext  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2     0.003        27       7      36 ..      20      52 ..      14      60 .. 0.69
   2 ?    5.8   0.0     0.002        18       4      47 ..      77     121 ..      74     123 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.003
    FtsH_ext  7 lallllllllslfg.......gsgtgstkeisyseFl 36
                l l+++ ll+++         +    s+++i ys+F 
  CCD22721.1 20 LPLFIFSLLSQIVTngiykltI----SGRDILYSQFS 52
                5666666666654444434444....**********6 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.002
    FtsH_ext   4 wlllallllllllslfg.gsgtgstkeisyseFledleqgnvekv 47 
                 ++ +a l+++l+ls+ + +  ++s+k+   + ++ed+++++ +++
  CCD22721.1  77 YFHIASLMVFLFLSYMPiIHMETSPKDELLNALQEDVKNQQKSSI 121
                 899**************977778***************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1611.08
//
Query:       CCD22722.1  [L=215]
Description: hypothetical protein NDAI_0A05670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-31  106.7   0.0    8.4e-31  106.1   0.0    1.3  1  Ribosomal_S10  Ribosomal protein S10p/S20e


Domain annotation for each model (and alignments):
>> Ribosomal_S10  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.1   0.0   4.7e-35   8.4e-31       2      97 ..      62     157 ..      61     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 106.1 bits;  conditional E-value: 4.7e-35
                    EEEEESSHHHHHHHHHHHHHHTTSSS-EE---EEEEEEEEEEEEE--SS--S--EEEEEEEEEEEEEEEE.E-HHHHHHHS-...S---SS-EEEE CS
  Ribosomal_S10   2 irlkSydsklLekavkkivraakelgikvkgpvplPtkrkrvtvlksphvdkksreqfeirthkRlidisdatketidtllkllqlnlpegVsvev 97 
                    ++l+Syd ++L+ ++++ +ra  +lgi+++gp+plPt+r+r+tv+ksp+v+ ks+e+fe++thkRli+++d ++e ++ +++++ ++   gV++++
     CCD22722.1  62 VQLRSYDNENLDFFADFSLRAGFYLGIPLTGPKPLPTRRERWTVIKSPFVHAKSKENFERHTHKRLIKVWDTNPELVELWISYITKHSITGVGMKC 157
                    79********************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1840.16
//
Query:       CCD22723.1  [L=1086]
Description: hypothetical protein NDAI_0A05680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-35  120.5  10.4    1.2e-30  106.4   0.0    3.5  4  E1-E2_ATPase     E1-E2 ATPase
    1.4e-28   99.9   0.5    1.4e-28   99.9   0.5    2.9  3  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    1.7e-21   77.5   0.0    4.1e-20   73.0   0.0    2.5  1  Hydrolase        haloacid dehalogenase-like hydrolase
    1.5e-19   69.8   0.0    2.9e-19   68.9   0.0    1.5  1  Cation_ATPase    Cation transport ATPase (P-type)
    7.8e-13   47.9   0.0    2.6e-12   46.3   0.0    2.0  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    0.00058   19.7   4.2     0.0014   18.4   0.8    2.7  3  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.033   13.8   1.6        1.3    8.7   0.1    2.9  3  Wzy_C            O-Antigen ligase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.5   2.9         7   1.8e+04     126     155 ..      68      93 ..      59     102 .. 0.44
   2 !  106.4   0.0   4.8e-34   1.2e-30       2     104 ..     119     237 ..     118     251 .. 0.95
   3 !   24.3   7.4   7.2e-09   1.8e-05      92     180 ..     248     340 ..     239     341 .. 0.87
   4 ?   -1.4   0.0      0.57   1.5e+03      92     135 ..     787     830 ..     783     861 .. 0.62

  Alignments for each domain:
  == domain 1  score: -5.5 bits;  conditional E-value: 7
                   HHHHHHHHHHS-STTTSSTTHHHHHHHHHH CS
  E1-E2_ATPase 126 vlliallvflialllgkslaeallralall 155
                   ++l++++ ++i + ++++++     ++  +
    CCD22723.1  68 MILVLFISMVISFAIRDWIT----GGVICF 93 
                   34444444444444444443....333333 PP

  == domain 2  score: 106.4 bits;  conditional E-value: 4.8e-34
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-...............G-TTEE-TT-EEEE-EEE CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek...............ekgdmvfsGtvvvsgeak 82 
                   l++p a virdg  e i++k++vpGD+  +k gd++paD r+++ ++ e des+LTGEslpv+k               ++ + ++s+++vv+g+ak
    CCD22723.1 119 LSSPNALVIRDGVAEHIPSKDVVPGDLCSVKVGDTIPADLRLISNHNfETDESLLTGESLPVSKdfeaiytkeedtsvgDRLNIAYSSSTVVKGRAK 215
                   67899***********************************************************************9999***************** PP

                   EEEEE-TTTSTTTTTSTTS--- CS
  E1-E2_ATPase  83 avVtatgedtelgkiarlveea 104
                   ++V++tg +te+gkia++++ +
    CCD22723.1 216 GIVIKTGLNTEIGKIAESLRGE 237
                   *****************99865 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 7.2e-09
                   STTTTTSTTS----......----HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  92 telgkiarlveeak......skktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlak 180
                   ++l+ i +++++++       + tpl +kl+kl+  l+++++++a++v++ + ++ +      + a+ +++++iP  L++++++++++ga+ +a 
    CCD22723.1 248 SKLQNIRKSIKQTAgaflgvTTGTPLHRKLSKLAILLFFIAVIFAIVVMASQKFIVDR--GVAIYAICVALSMIPSSLVVVLTITMSVGAAVMAT 340
                   56677777777777677777889***************************99887776..68888****************************96 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.57
                   STTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  92 telgkiarlveeakskktplqkkldklgkvlvpvvlliallvfl 135
                     ++ i +++ee ++ + ++qk++ +l +  v+ +l +++ +++
    CCD22723.1 787 DNFASILNAIEEGRRMTDNIQKFVLQLLAENVAQALYLIVGLVF 830
                   56778888899988888888888776665544443333333333 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.6       1.9   4.8e+03     141     141 ..      81      81 ..      57     118 .. 0.55
   2 ?    0.9   0.5      0.13   3.2e+02      90     156 ..     277     342 ..     232     357 .. 0.60
   3 !   99.9   0.5   5.4e-32   1.4e-28       3     181 ..     840    1039 ..     838    1040 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.9
  Cation_ATPase_C 141 l 141
                      +
       CCD22723.1  81 A 81 
                      2 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.13
  Cation_ATPase_C  90 aqtmaFitlvlsqifnalnlrsrreslfkfsglf.snkllllaillslllqvlivyvpglnavfgtap 156
                       + +a + + ++ if ++++ s ++ ++  +g+      + l+++ s l++vl + + +++av+ t++
       CCD22723.1 277 LSKLAILLFFIAVIFAIVVMAS-QKFIVD-RGVAiYAICVALSMIPSSLVVVLTITMSVGAAVMATRN 342
                      5555666666666666666666.333333.44432223333333333333333333345555555555 PP

  == domain 3  score: 99.9 bits;  conditional E-value: 5.4e-32
  Cation_ATPase_C    3 plsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenkls........ 86  
                       pls++ +Lw+ +vt  +pa+ L++e++ +d+m+rpP++ k+ +++++++++++ +g+l+a++++ +f   ++++++ +   +++        
       CCD22723.1  840 PLSPVEVLWVIVVTSCFPAMGLGVEKAAPDLMERPPNDSKAGIFTWEVIIDMFSYGILMAACCMGAFTSIIYGKDAGNLGINCNkgynetch 931 
                       9***********************************************************************88666655555567777888 PP

  Cation_ATPase_C   87 .snyaqtmaFitlvlsqifnalnlrsrre.............slfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewli 164 
                        + +a+++aF t+ ++ ++ a+ +  +r+               f+ + ++ n +l+++i+l ++ ++ +vy+p++n+   +++  ++ew i
       CCD22723.1  932 dVFRARSAAFATMTWCALILAWEVVDLRRsffrrqpetdvpvRQFF-KDVWGNQFLFWSIILGFVGTFPVVYIPVINDKVFLHKGIGYEWGI 1022
                       899***********************99989999999888863333.5888999**********************9986677666****** PP

  Cation_ATPase_C  165 alllalvvllvdelvKl 181 
                       a+++  v ++  el+K+
       CCD22723.1 1023 AFAFTTVFWAGCELYKF 1039
                       ******99999999996 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   1.6e-23   4.1e-20       4     210 .]     360     763 ..     357     763 .. 0.77

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 1.6e-23
                 EEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHH..........HHCHHHHHHHHHHHHH.............HHHHHHHHHETTTEHHHHTHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   4 vvfDkdGTLttgepsvedvivsaalalaaaletg..........sehpigkalvaaakar.............sgaltgfatfigrgayaigkpewlta 79 
                 ++ Dk+GTLt+g++  ++v+             g          ++  igk                       g l++f +     +y+ +      +
  CCD22723.1 360 ICSDKTGTLTQGKMITKQVWIPK---F------GtivisdsnapTNPNIGKVNLIP---FvspyeyhhnededVGILQNFKQ-----RYQNNDLPTNGR 441
                 789*****************999...2......12223333333222233332222...12224444554443333355555.....444444443333 PP

                 H.............HCHHHHHHHHHHHHHHCHHHHHH.............................................................. CS
                 x.............xxxxxxxxxxxxxxxxxxxxxxx.............................................................. RF
   Hydrolase  80 l.............dippdlgaaigsaqsqgrtvall.............................................................. 103
                 +             +i + ++++ g++ ++g    +                                                               
  CCD22723.1 442 NhlyedflkaatlaNIATVFKDNEGQWKAHGDPTEIAiqvfttrmdlprqiltgervntneletedspsfineseseeeikfkhlveypfdstikrmta 540
                 322222222223444555555555555555555555566777777777777777777777777777777777999999999999999************ PP

                 ...........................................................................................TTHHHHHH CS
                 ...........................................................................................xxxxxxxx RF
   Hydrolase 104 ...........................................................................................qaralavf 111
                                                                                                            +    +++
  CCD22723.1 541 ifedneqksfniytkgafesvlaccthwfggidgkkvemteedkrfiqknvdtlsaeglrvlgfatqkfdlqslneterkelltkrtsaeaDLAFQGLV 639
                 ***************************************************************************************999888999999 PP

                 HHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT....................GGGESEEEEHHCES.......STTTSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxxxxx.......xxxxxxxxxxxxx RF
   Hydrolase 112 tiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG....................ddyfdaviasdiet.......vakpspegkvaai 183
                  i dp  ++pe+a av+++++agi+v +ltgd+p ta+++a+++G                       fd+  + +i++       +a  sp+ kv+ i
  CCD22723.1 640 GIYDP--PRPETASAVKKFHQAGINVRMLTGDFPGTAKAIAQEVGilpvnlyyyskevvdimvmtGSQFDHLSDEEIDKlpvlplvIARCSPQTKVRMI 736
                 999**..******************************************97666666666666655555666666666688888888888********* PP

                 HHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 184 reLqgkpeevamVGDgvnDaaalaaAg 210
                 + L  + + +am GDgvnD++ l+ A+
  CCD22723.1 737 EALHRRNKFCAMTGDGVNDSPSLKLAN 763
                 ***988889**************9885 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   1.1e-22   2.9e-19       2      91 .]     454     568 ..     453     568 .. 0.88

  Alignments for each domain:
  == domain 1  score: 68.9 bits;  conditional E-value: 1.1e-22
  Cation_ATPase   2 lcNsaafsensekdevkllGnktEsALlvlaekl..........................gldteelreetkkvqeipFnssrKrmsvvlklepek 71 
                    l N a++  +++++++k++G++tE+A++v++ ++                          +++ +e + ++k++ e+pF+s+ Krm+ +++ +++k
     CCD22723.1 454 LANIATV-FKDNEGQWKAHGDPTEIAIQVFTTRMdlprqiltgervntneletedspsfiNESESEEEIKFKHLVEYPFDSTIKRMTAIFEDNEQK 548
                    7896777.6999**********************999999998877777777777777666666666666************************** PP

  Cation_ATPase  72 kvrlyvKGApeiilkrCthv 91 
                    ++ +y+KGA e++l++Cth+
     CCD22723.1 549 SFNIYTKGAFESVLACCTHW 568
                    ******************96 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0     1e-15   2.6e-12       3      69 .]      13      79 ..      11      79 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 1e-15
  Cation_ATPase_N  3 alsleevlekLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69
                     +l ++ev e+L+td+e+GLt+++a++rl + G+N l +  k  +  +l+ q++n ++++L++++++s
       CCD22723.1 13 TLQPKEVVERLQTDSEKGLTDEAAQQRLLTVGENSLGNDMKMDYKGMLIHQICNAMILVLFISMVIS 79
                     67889************************************************************98 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.82   2.1e+03     119     170 ..     503     551 ..     438     561 .. 0.46
   2 ?    0.9   0.0      0.12     3e+02      18      54 ..     647     683 ..     643     693 .. 0.89
   3 !   18.4   0.8   5.6e-07    0.0014     197     255 .]     737     796 ..     732     796 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.82
                  HHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTEE CS
  Hydrolase_3 119 keeektkkkkeeidseeeledeeiakililkdkekldelekelksklnkllt 170
                   e e++ ++   i+++e +e+ ++ +++ +  ++ ++++ + ++++ +k ++
   CCD22723.1 503 LETEDSPSF---INESESEEEIKFKHLVEYPFDSTIKRMTAIFEDNEQKSFN 551
                  222222222...2333333333333344333333333333333333333333 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.12
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCC CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgl 54 
                  ++t++a+kk++++gi+v   TG  + +++ +++e+g+
   CCD22723.1 647 PETASAVKKFHQAGINVRMLTGDFPGTAKAIAQEVGI 683
                  7899******************999999999999986 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 5.6e-07
                  HHCT--GGGEEEEESSGGGHHHHHHSSEEEEET.TS-HHHHHHSSEEE--GGGTHHHHHH CS
  Hydrolase_3 197 kelnisleeviafGDgeNDieMLeaaglgvAmg.naseevkkaAdyvtksnnedGVakal 255
                  + l   ++ ++  GDg ND + L+ a++g+Amg n+s+ +k a+d v  + n  ++++a+
   CCD22723.1 737 EALHRRNKFCAMTGDGVNDSPSLKLANVGIAMGiNGSDVAKDASDIVLSDDNFASILNAI 796
                  5566667778899*******************999************9999999999987 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.028        71      22      95 ..      69     205 ..      63     214 .. 0.56
   2 ?    8.7   0.1    0.0005       1.3      14      59 ..     277     331 ..     264     456 .. 0.63
   3 ?   -2.1   0.0         1   2.6e+03     143     152 ..     989     998 ..     977    1064 .. 0.58

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.028
       Wzy_C  22 llvalivlliifykrripfllllgilvgvilliilfvlstnletlknitkafgkldkk......................................... 79 
                 +lv++i  +i f  r +   +  g+++ v+++ +++ + + +++ k ++   ++l  +                                         
  CCD22723.1  69 ILVLFISMVISFAIRDW---ITGGVICFVVVVNVVIGVYQEFKASKTMN-SLKAL--Sspnalvirdgvaehipskdvvpgdlcsvkvgdtipadlrli 161
                 23344444444444444...33446666666666666444444444332.11222..123455566666666666666666666666666666666666 PP

       Wzy_C  80 ............................kgkdksgssRlyiwkr 95 
                                             k++d+s + Rl+i  +
  CCD22723.1 162 snhnfetdeslltgeslpvskdfeaiytKEEDTSVGDRLNIAYS 205
                 66666666666666677777777777778888888888888544 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0005
       Wzy_C  14 tsRsgiigllvalivlliifykrri.pfllllgilvgvilliilfv........l 59 
                  s  +i+ +++a+i++++++  +++ + +++++ ++ v+l +i+++        +
  CCD22723.1 277 LSKLAILLFFIAVIFAIVVMASQKFiVDRGVAIYAICVALSMIPSSlvvvltitM 331
                 588999**************99999644444444444444444443333333330 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1
       Wzy_C 143 lvetGiiGlv 152
                  + +G++G++
  CCD22723.1 989 SIILGFVGTF 998
                 4444444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1086 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 7261.23
//
Query:       CCD22724.1  [L=594]
Description: hypothetical protein NDAI_0A05690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-75  252.0   0.5    7.1e-75  252.0   0.5    1.5  2  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    3.4e-12   46.2   0.4      7e-12   45.2   0.4    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    4.3e-07   29.7   0.0     0.0035   16.9   0.0    2.4  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)
  ------ inclusion threshold ------
      0.029   14.5   0.1       0.32   11.1   0.0    2.5  2  DnaJ             DnaJ domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.56   2.5e+03     170     175 ..      40      45 ..       2     133 .. 0.57
   2 !  252.0   0.5   1.6e-78   7.1e-75       1     313 [.     227     578 ..     227     579 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.56
                  EEEHHH CS
                  xxxxxx RF
  tRNA-synt_2 170 rltyke 175
                  +++ k+
   CCD22724.1  40 QVEAKK 45 
                  222233 PP

  == domain 2  score: 252.0 bits;  conditional E-value: 1.6e-78
                  .CCHHHHTHHHHC.CSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE-E-S-SHHHHHHHHHCTHSEEEEE CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   1 seelrlknryldl.rtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeffaLtqspqlylellivagidrvfqi 97 
                  ++e+r+++ryldl  +++ +  + +rs++++++r++l++++fie+etP++   ++++ a++F+++++  + +++ ++++p+l+l+ l+v+g+drv++i
   CCD22724.1 227 DQETRYRKRYLDLiMNKDARGRFITRSQIIRYIRRFLDQREFIEVETPMMNVIAGGATAKPFVTHHNDLDMDMY-MRIAPELFLKELVVGGMDRVYEI 323
                  589**********9******************************************************988999.*********************** PP

                  EEEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS.....EE-SSS-EEEEHHHHHHHHHTS....... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx....... RF
  tRNA-synt_2  98 araFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrns.....kdlkkpfkrltykeaieklnei....... 183
                  +r+FR+E ++ ++++ EFt++e++ ++++  d+m+++e +++++vke+ ++s    ++   +n       ++++p+kr+++ e +ek  +        
   CCD22724.1 324 GRQFRNEGIDMTHNP-EFTTCEFYQAYADVYDLMDMTELMFSEMVKEI-TGSYIIKYHPDPNNPekeleLNFTRPWKRMNMIEELEKKFNVtfpagdk 419
                  ***************.********************************.66644444444444488988999***************55546666555 PP

                  .........-SS--HHHHHHHHH............................HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEE CS
                  .........xxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 .........gkdldkaderalvk............................keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGs 244
                                        k                                +p+f+  +P++++p+++ ++++ + l e++++++   E+++++
   CCD22724.1 420 lhtaetgefL------------KkvlsdngmecpppltnarmldklvgeleDMCINPTFIFGHPQMMSPLAKYSRDT-PGLCERFEVFVATKEICNAY 504
                  5544444440............1555556666666666666666677777688899*****************9999.9******************* PP

                  EB--SHHHHHHHHHHCCHH.....SSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 245 lRiedpeeleeklkskgld.....eeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  ++++dp  ++++++++  +     eea+  ++ +++aleyG+pp+gG+g+G+dRl m+l++s+ Ir+v++FP l
   CCD22724.1 505 TELNDPFDQRARFEEQARQkdqgdEEAQLVDETFCNALEYGLPPTGGWGCGIDRLAMFLTDSNTIREVLLFPTL 578
                  ****************9999999999999*******************************************86 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.4   1.6e-15     7e-12       1      76 []     126     211 ..     126     211 .. 0.93

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 1.6e-15
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET......HHHHHHHTTS-TTSEEEEEEEEEEC...TTS...SEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr......eeatklaenlkeGdvvrvtGrvkrr...pgg...elelkveeiell 76 
                      V +aGr+++++  sg+k+ f++l  +  ++qv+         e+++k +e lk+Gd+v+v+G+v+r+   + g   e+++ v++iell
       CCD22724.1 126 VAIAGRIHAKR-ESGSKLKFYVLHGDGVEVQVMSQLqdyhkeEDYEKDHEVLKRGDIVGVEGYVGRTqpkK-GgegEISVFVSRIELL 211
                      789*******9.*******************************************************7753.15789********986 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   7.7e-07    0.0035     104     156 ..     320     374 ..     317     404 .. 0.74
   2 !   10.3   0.0     8e-05      0.36     211     234 ..     549     572 ..     533     578 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.7e-07
                   EEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--..HHHHHHHHHHHHHHHCTST CS
  tRNA-synt_2d 104 iisigrvfRrdavDathlaeFhqveglvvdenvs..ladlkgvleellkklfgae 156
                   +  igr fR++ +D+th +eF+ +e+  +  +v   ++    +++e++k++ g  
    CCD22724.1 320 VYEIGRQFRNEGIDMTHNPEFTTCEFYQAYADVYdlMDMTELMFSEMVKEITGSY 374
                   6679*********************987766552224444456667777665554 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 8e-05
                   EEEEEEEHHHHHHHHHT-SSGHHH CS
  tRNA-synt_2d 211 gfafGlGveRlamlkygieDiRel 234
                     ++G G++Rlam+ ++ + iRe+
    CCD22724.1 549 TGGWGCGIDRLAMFLTDSNTIREV 572
                   568*******************86 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   7.2e-05      0.32       1      44 [.     351     394 ..     351     409 .. 0.86
   2 ?    0.3   0.0      0.18   8.1e+02      44      56 ..     498     510 ..     489     518 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 7.2e-05
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFk 44 
                 d+Y+++  ++ + ++ +k+     ++kyHPD n+ ++e e +F 
  CCD22724.1 351 DVYDLMDMTELMFSEMVKEITGSYIIKYHPDPNNPEKELELNFT 394
                 689999999999999999999999*******9988888887775 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.18
                 HHHHHHHHHHTSH CS
        DnaJ  44 keineAyevLsdp 56 
                 kei +Ay  L+dp
  CCD22724.1 498 KEICNAYTELNDP 510
                 8999******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1184  (0.0660383); expected 358.6 (0.02)
Passed bias filter:                      687  (0.0383178); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 4190.68
//
Query:       CCD22725.1  [L=1157]
Description: hypothetical protein NDAI_0A05700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-37  129.1   0.3    1.9e-37  129.1   0.3    1.9  2  Pkinase      Protein kinase domain
    1.3e-22   80.3   0.1    1.3e-22   80.3   0.1    1.8  2  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.014   15.4   1.8        2.5    7.9   0.0    2.7  3  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.3   3.1e-41   1.9e-37      24     260 ..      89     332 ..      85     334 .. 0.84
   2 ?   -5.3   2.2         3   1.8e+04     202     226 ..     670     682 ..     655     706 .. 0.45

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 3.1e-41
                 TEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE.......SSEEEEEEE--TTEBHHHHHHHHSS..--HHHHHHHHHHHHHHHH CS
     Pkinase  24 gkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee.......kdelylvleyveggeladllerkgs..lseeeakkiakqilegle 112
                 g+i ++K++ +++++  +e  +++E++++kklk  pn+v+++++  +         e++l++e++++++l d+++++ +  l+e+e+ ki++ i  +++
  CCD22725.1  89 GDIACLKRVLVQDENGLNE--MRNEVEVMKKLKgAPNVVQYFDSNASrrhngasGFEVLLLMELCPNKSLLDYMNQRLTtkLTEHEILKIMYDITFAVS 185
                 5677888888888887665..************************99999988878899***************9554435****************** PP

                 HHHHTT..EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..........BCTTTSCGGGS-HHHH...TTSCBSHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase 113 ylHskg..iiHrDlKpeNiLidekgelKitDFGlakelesssk..........ltsfvgtseYlAPEvl...keneyskkvDvWslGvilyelltgkpp 196
                 ++H  +  ++HrD+K eN+L+d ++++K++DFG  +      +             +  t++Y++PE++   +  ++++k+D+W+lG+ ly+ll+  +p
  CCD22725.1 186 HMHYLKipLLHRDIKIENVLVDAQNNFKLCDFGSTSTRLPIVTthqdialltqNIYVHTTPQYRSPEMIdlyRCLPIDEKSDIWALGIFLYKLLFFITP 284
                 ***888557************************876533322235679998644456689*********99999************************* PP

                 TTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 197 fsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellq 260
                 f+          ++ q    + il+  k ++p+ ++ s+++++l+  +l+++p+ R+ + ++l+
  CCD22725.1 285 FE----------MTGQ----FAILHS-KYEFPK-NNYSSKLINLIIIMLAENPNLRPNIYQVLD 332
                 **..........4445....555533.445554.456999******************999986 PP

  == domain 2  score: -5.3 bits;  conditional E-value: 3
                 HHHHHHHHHHTHHHHHHHCTSHH.. CS
     Pkinase 202 gkekvekeldqlekilkilgetkek 226
                 ++++++++ +q            ++
  CCD22725.1 670 QQQQQQQQQQQ------------QQ 682
                 21111111111............11 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.1   2.2e-26   1.3e-22      42     257 ..     102     332 ..      91     334 .. 0.81
   2 ?   -3.2   0.2      0.66   3.9e+03     153     175 ..     676     698 ..     658     702 .. 0.62

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 2.2e-26
                  HHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSS.......EEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT..EEEST- CS
  Pkinase_Tyr  42 eeekeelleeakimkkl.khpnivkllgvctkeep.......llivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskk..lvHrdl 129
                  e+  +e+ +e+++mkkl   pn+v++     ++++       +l+++e++++ +Ll++++++ ++klt +++l++++++  ++++++  k  l+Hrd+
   CCD22725.1 102 ENGLNEMRNEVEVMKKLkGAPNVVQYFDSNASRRHngasgfeVLLLMELCPNKSLLDYMNQRLTTKLTEHEILKIMYDITFAVSHMHYLKipLLHRDI 199
                  4557899**********99*******9988833333567888**************************************9988888655338***** PP

                  SGGGEEEEETTEEEE-STTTHEET.....TTSSEE..EETTSSTSGGGGS-HHHHHHSE...EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHH CS
  Pkinase_Tyr 130 aarNvLlsenkvvkisDfGLardi.....ekddey..vkkeeaklpvkWmapEslkekk...ftsksDvWsfGvllwEiftlgespypglkneevlek 217
                     NvL++ ++  k++DfG +++      +++d    +++   ++  ++ +pE+++  +   + +ksD+W+ G++l+ ++    +p++   +   ++ 
   CCD22725.1 200 KIENVLVDAQNNFKLCDFGSTSTRlpivtTHQDIAllTQNIYVHTTPQYRSPEMIDLYRclpIDEKSDIWALGIFLYKLLF-FITPFEMTGQ---FAI 293
                  *******************76653222213333334466666778899********9998899****************98.4567755444...456 PP

                  HHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 218 lkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  l+++++ +k++  +++l +l+   ++e+p+ Rp++ ++++
   CCD22725.1 294 LHSKYEFPKNN-YSSKLINLIIIMLAENPNLRPNIYQVLD 332
                  78899999887.6778888999999*********999876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.66
                  TTTSSEEEETTSSTSGGGGS-HH CS
  Pkinase_Tyr 153 iekddeyvkkeeaklpvkWmapE 175
                   +++++++++++++ p+ + ++E
   CCD22725.1 676 QQQQQQQQQQQQKQQPIFYNPIE 698
                  23444445566666666666666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0016       9.7      32      91 ..     103     165 ..      60     171 .. 0.76
   2 ?    7.9   0.0   0.00042       2.5     168     202 ..     194     226 ..     190     254 .. 0.73
   3 ?   -4.7   2.1         3   1.8e+04     121     139 ..     663     681 ..     644     694 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0016
                 S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE....EEEEEE----EE-SSHHHHHHH CS
         APH  32 raaeeirrevallrlLakagvpvPevlagdtddeeigl....lfalieyvpgrsllrklsaaql 91 
                    +e+r+ev++++ L +a + v + ++   ++ ++g     + +l+e +p +sll++++++ +
  CCD22725.1 103 NGLNEMRNEVEVMKKLKGA-PNVVQYFDSNASRRHNGAsgfeVLLLMELCPNKSLLDYMNQRLT 165
                 34789**************.6699***99999999999*99****************7666655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00042
                 EE-SS-SGGGEEEC..TTEEEEE---TT-EEEECC CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfedaglgppl 202
                 llH+D++  N+lvd++++    + Df+ +++  p+
  CCD22725.1 194 LLHRDIKIENVLVDAQNNFK--LCDFGSTSTRLPI 226
                 79************555555..7899988877764 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 3
                 HTCCHHHHHHCHHHCCCGC CS
         APH 121 qdlellrqlesatarllas 139
                 +++ +++q  ++++++ + 
  CCD22725.1 663 RYIQQQQQQQQQQQQQQQQ 681
                 2222222222222211111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3326  (0.18551); expected 358.6 (0.02)
Passed bias filter:                      764  (0.0426125); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.34u 0.32s 00:00:01.66 Elapsed: 00:00:00.50
# Mc/sec: 6905.83
//
Query:       CCD22726.1  [L=508]
Description: hypothetical protein NDAI_0A05710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-88  297.9   0.0    1.4e-88  297.6   0.0    1.1  1  ECH_2      Enoyl-CoA hydratase/isomerase
    3.6e-27   95.3   0.0    5.5e-27   94.7   0.0    1.3  1  ECH_1      Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
       0.25   11.2   3.7        5.8    6.8   0.1    2.9  2  RIH_assoc  RyR and IP3R Homology associated


Domain annotation for each model (and alignments):
>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.6   0.0   2.3e-92   1.4e-88       2     325 ..      45     396 ..      44     405 .. 0.90

  Alignments for each domain:
  == domain 1  score: 297.6 bits;  conditional E-value: 2.3e-92
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEE.SSSSECE--B--HHHHHHHHCS-THH.HHHHHHHHHHHHHHHC-SS-EEEEE-BEE CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkg.agekafCAGgDvralyeaakegkkee.eeffreeYklnyliatypkpvvalmdGiv 98 
                 +v+tLnrpk+lNaL++e+++++ ++l+e+ k+d +++++lk+ + +++fCAGgDv+++++ + eg+ ++  e+f++eY+ln ++atypk +v++mdGi+
  CCD22726.1  45 RVVTLNRPKKLNALNTEICKNMFQTLNEYVKSDVTNMIILKSsDPGRSFCAGGDVATVATCNLEGQIDKsIELFTAEYSLNFQLATYPKAIVSIMDGIT 143
                 79**************************************7625789******************988779**************************** PP

                 ETHHHHHHTTSSEEEE-TT-EEE--GGGGT----TTHHHHHHCS......STTHHHHHHHH---B-HHHHHHTTS--EE--GGGHHHHHHHHHTT.... CS
       ECH_2  99 mGgGvGlsvhgsfrvvtertvfAmPEtaIGlfPDvGgsyfLsrl......pgelGlylalTGarlkgadalaaglathyvpseklealeeaLaelessd 191
                 mGgGvGls+h++frv+te+t++AmPE+ IG+fPDvG+++ L+rl      + +++lyl+lTG+ ++g+da+ +gl +hy++s++l++le++L el+  +
  CCD22726.1 144 MGGGVGLSIHTPFRVATENTKWAMPEMDIGFFPDVGTTFALPRLvtlansRAQMALYLCLTGDLVTGEDAYLLGLSSHYINSDNLKDLEKRLGELSPPT 242
                 *******************************************73322212366****************************************98877 PP

                 .................--------......----SHHHHHHHHHHHT.-S...-TTTHHHHHH...T..--SHHHHHHHHHHHHS-HHHHHHHHHHHH CS
       ECH_2 192 .............eeaveevleelaeeaeeeeeeselaekreaidrlfsad...sveeiveaLek..aeaeedewakktletlkkrsPtslkvtleqlr 272
                               + ++++++e+ ++ +++++ +  +e+ + i+++f+ +   s+e+i+++L++   ++e++e+++++  +l+++s  s+++++++++
  CCD22726.1 243 hkslkarerktmfFDMINATINEFCTNLPKNHTFKYSSEQLQVIEKCFDINqvtSIEDIFKHLSEytGSNEAREFCNEVSMKLSSKSVRSMQLAIKLIQ 341
                 899*****999988899999999999999877755556899*******87667689********999888999************************** PP

                 HHTTT--HHHHHHHHHHHHHHHHHH....SSHHHHHHHHTTS-------SSSSGGG- CS
       ECH_2 273 rgrklsslaevlrmElrlalrllae....kDfveGvrallvdkdkkPkWkpatleev 325
                  + k  ++ + lr++l  a++++ +    ++f e  r++l++k+k+P + ++++e +
  CCD22726.1 342 DNCKD-DVGSSLRRDLVTASNMCINedglTEFSEATRHKLIEKNKAP-YPWKKIEPM 396
                 *****.5************999976577899************9999.555555555 PP

>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   9.3e-31   5.5e-27       7     181 ..      45     230 ..      39     253 .. 0.84

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 9.3e-31
                 EEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEE..BTSEEEEEB-HHHHHHHHC....HHHHHHHCCHHHHHHHHHHSSSEEEEEE-SEE CS
       ECH_1   7 aviklnrPeavNalsaelltEliqalekleddksvravvLtG..gdkaFaaGadlkemaeeek....akqallkeevlelwtklytvpkpviaavnGaa 99 
                  v++lnrP+++Nal+ e+ +++ q l++  ++     ++L +   ++ F+aG+d+  +a  +      k  +l  + ++l  +l t pk +++ + G  
  CCD22726.1  45 RVVTLNRPKKLNALNTEICKNMFQTLNEYVKSDVTNMIILKSsdPGRSFCAGGDVATVATCNLegqiDKSIELFTAEYSLNFQLATYPKAIVSIMDGIT 143
                 689************************99999999*******544589*******999887764322233333445567778999************** PP

                 ETHHHHHHHHSSEEEEETTTEEE-GGGGGTS--CTTCHHHHHHHHH.....HHHHHHHHHHT-EEEHHHHHHCTSSSEEESGGGHHH CS
       ECH_1 100 igGGlelalacDiviaadnasfglnelklGlipgaggtqilarkvG.....kskAeeilllgkkisaqealkvGlvdkvvpeeqlle 181
                 +gGG+ l + + +++a +n +++ +e+ +G++p++g t+ l+r v       + A +++l+g+ +++++a   Gl ++ +  ++l++
  CCD22726.1 144 MGGGVGLSIHTPFRVATENTKWAMPEMDIGFFPDVGTTFALPRLVTlansrAQMALYLCLTGDLVTGEDAYLLGLSSHYINSDNLKD 230
                 *******************************************8762222224455788999*************999998888876 PP

>> RIH_assoc  RyR and IP3R Homology associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1   0.00098       5.8      54      87 ..      51      83 ..      11      90 .. 0.75
   2 ?    3.5   0.9      0.01        63      38      78 ..     291     345 ..     241     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00098
   RIH_assoc 54 katelnskslelmlqvldtLtefvqgpCpeNqea 87
                + ++ln  + e+++++++tL+e+v+   ++N ++
  CCD22726.1 51 RPKKLNALNTEICKNMFQTLNEYVKSD-VTNMII 83
                33379999****************987.555555 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.01
   RIH_assoc  38 synlvseivdllenlskat..............elnskslelmlqvldtLtefvq 78 
                 ++n v+ i d++++ls+ t              +l+sks++ m+++++ +++ ++
  CCD22726.1 291 DINQVTSIEDIFKHLSEYTgsnearefcnevsmKLSSKSVRSMQLAIKLIQDNCK 345
                 5677888888888888888888999999988888999999999988888877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3837.43
//
Query:       CCD22727.1  [L=331]
Description: hypothetical protein NDAI_0A05720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.004   17.1  14.2      0.011   15.6  14.2    2.1  1  Wtap            WTAP/Mum2p family
  ------ inclusion threshold ------
       0.04   13.5   1.7      0.058   12.9   1.2    1.5  1  Pro_dh          Proline dehydrogenase
       0.68    9.2   7.9       0.23   10.8   3.0    2.4  2  DUF4407         Domain of unknown function (DUF4407)
       0.69   10.0   4.6       0.81    9.8   0.1    3.0  3  DUF4351         Domain of unknown function (DUF4351)
        3.6    7.9   8.1       0.33   11.2   0.5    3.0  4  Retrotrans_gag  Retrotransposon gag protein


Domain annotation for each model (and alignments):
>> Wtap  WTAP/Mum2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6  14.2   3.2e-06     0.011      11     141 ..     166     315 ..      24     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.2e-06
        Wtap  11 arlsakeqelqelksslqe.lkqslqpps..ssqlrqvllDPA..vnlvfsrlrkeleeaenkleeaqeeLqalkftpds................qtG 88 
                 a+l++ e e+ +l++  +e ++   ++ps  ++++ ++++ ++  +++v+ +l + l+ +e+++++ q ++ +l +   +                +  
  CCD22727.1 166 AQLRSLESEIEKLRTTFNEdFEGF-RKPStnDEDMMTTYFGSSpnIKVVYRELVNLLRRKEDEISKVQLNIDSLLTAL-AldpsnpltsyetfdleTIS 262
                 356666777777765555423333.33333444666666655545999999999888888888888887655443222.13344477777777777*** PP

        Wtap  89 krLmakcrvLeqENeELgkvleegrvakLeselalqkkfveelkkaleeleel 141
                  r++ k+  L +EN++++k+l+ ++ ++ + +l+l+kk ++el+ +l++l++ 
  CCD22727.1 263 ERMIRKLENLTKENQDMAKALNFEESKRKQIKLNLAKKENKELRAKLARLQQG 315
                 ***********************************************999875 PP

>> Pro_dh  Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.2   1.6e-05     0.058      54     121 ..     233     304 ..     171     313 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
                 TCC-S....EEE-GGG..TT-SGGGHHHHHHHHHHHHHHHHHHHHHTT-EEEE----GGGHHHHHHHHHHHHHS CS
                 xxxxx....xxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh  54 leapg....vsvklsa..prletaeeeevmeelverlrtlakeakelgvrlliDaEeaklqeltlelfrklnke 121
                 l+ ++    +++ +s    ++et + e + e+++++l++l+ke +++   l++  Ee+k++++ l+l +k nke
  CCD22727.1 233 LNIDSlltaLALDPSNplTSYETFDLETISERMIRKLENLTKENQDMAKALNF--EESKRKQIKLNLAKKENKE 304
                 23333222244444446669************************999999987..9**************9974 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   2.1      0.16   5.6e+02     133     224 ..      27     151 ..       7     160 .. 0.57
   2 ?   10.8   3.0   6.5e-05      0.23     130     208 ..     149     291 ..      76     326 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.16
     DUF4407 133 aelaeleaqiaalqaeidaaearldalraeaqkeldgtk.....................gtgttgvaGkgpaakekkaqldaaqaelaelkakld... 207
                  +++ + +q+a+ q  ++  ++r + +++ ++  +++t+                     ++  ++ + +g++ +++++ + ++ +++ +l++ ++   
  CCD22727.1  27 HQQQSAISQQAQQQPMLNGIQDRQNVATESMN-TIHQTFpinpafhsigpndhidniknnNNNNSNNNHNGQSLQTNNSSNVRLYNTIPSLQTYSRfqr 124
                 33333334444444444444444444444444.334444555566666666666666666444455677777777777777777777777777766777 PP

     DUF4407 208 ..........atarlaalraelaelea 224
                           +++++++l +++a+l++
  CCD22727.1 125 mqgdiplnmrQGEAMNNLPSNIATLNT 151
                 777777777766666666666666665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 6.5e-05
     DUF4407 130 a.......ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk...gtgttgvaGkgpaakekkaqldaaqaelaelkakld........... 207
                         l +++   +aq+++l++ei+++++++++  + ++k  +++    +t     +    +++e  + l +++ e+ +++ ++d           
  CCD22727.1 149 LntntfesLGQQVLIRDAQLRSLESEIEKLRTTFNEDFEGFRKPSTNDEdmmTTYFGSSPNIKVVYRELVNLLRRKEDEISKVQLNIDslltalaldps 247
                 133344447788888899999999999999999999999999999999888744444557777788887777777777777777777777777779999 PP

     DUF4407 208 ...........................................a 208
                                                            +
  CCD22727.1 248 npltsyetfdletisermirklenltkenqdmakalnfeeskrK 291
                 99999988888887777666655555544444444444444432 PP

>> DUF4351  Domain of unknown function (DUF4351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00023      0.81      16      47 ..     131     162 ..     130     177 .. 0.94
   2 ?   -0.2   0.1      0.31   1.1e+03      14      34 ..     219     238 ..     215     243 .. 0.85
   3 ?   -0.9   0.0      0.51   1.8e+03      23      37 ..     261     275 ..     256     287 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00023
     DUF4351  16 LtrrfGelspeleeqIksLsleqLEdLgealL 47 
                 L+ r Ge  ++l ++I +L+++  E+Lg+++L
  CCD22727.1 131 LNMRQGEAMNNLPSNIATLNTNTFESLGQQVL 162
                 88999******99***************9987 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.31
     DUF4351  14 rlLtrrfGelspeleeqIksL 34 
                  lL+r+ +e+s+  + +I+sL
  CCD22727.1 219 NLLRRKEDEISKV-QLNIDSL 238
                 699*******999.8888887 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.51
     DUF4351  23 lspeleeqIksLsle 37 
                 +s+ ++ ++++L+ e
  CCD22727.1 261 ISERMIRKLENLTKE 275
                 555555555555443 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.65   2.3e+03      28      50 ..      18      40 ..       8      62 .. 0.61
   2 ?   -2.9   0.0       2.4   8.6e+03      63      78 ..     116     130 ..      90     141 .. 0.66
   3 ?   -1.1   0.0      0.65   2.3e+03      30      47 ..     176     193 ..     151     201 .. 0.71
   4 ?   11.2   0.5   9.3e-05      0.33      18      65 ..     272     321 ..     256     325 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.65
  Retrotrans_gag 28 sWkdlkkaflktflpserkdqle 50
                    +++d ++af+++    ++++q +
      CCD22727.1 18 TFTDSTNAFHQQQSAISQQAQQQ 40
                    66666666666666644443333 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.4
  Retrotrans_gag  63 vreYvtrfktladqld 78 
                     ++ Y  rf+++  +++
      CCD22727.1 116 LQTY-SRFQRMQGDIP 130
                     3444.56666665555 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.65
  Retrotrans_gag  30 kdlkkaflktflpserkd 47 
                     ++l++ f++ f+ +++ +
      CCD22727.1 176 EKLRTTFNEDFEGFRKPS 193
                     467777777777766555 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 9.3e-05
  Retrotrans_gag  18 lvarsida..sesWkdlkkaflktflpserkdqleeelsslrQgtesvre 65 
                     l ++++d   + ++++ k++  k +l +++ ++l+++l +l+Qg+esv++
      CCD22727.1 272 LTKENQDMakALNFEESKRKQIKLNLAKKENKELRAKLARLQQGKESVHD 321
                     44555554667899999999999*************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2289  (0.12767); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2300.78
//
Query:       CCD22728.1  [L=373]
Description: hypothetical protein NDAI_0A05730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.2e-104  347.7   0.0   3.8e-104  347.4   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.4   0.0  2.1e-108  3.8e-104       8     274 ..      48     356 ..      34     357 .. 0.95

  Alignments for each domain:
  == domain 1  score: 347.4 bits;  conditional E-value: 2.1e-108
                   H....HHCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH........... CS
  DAHP_synth_1   8 a....adiliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel........... 89 
                   a    +dil+Gkddrl++++GPCsi+dp+aa+eyA+rl+k++++l++dl iimray+eKp r+tvg+kGlindpd++++++i+k+l           
    CCD22728.1  48 ArdgvCDILNGKDDRLVIVIGPCSIHDPKAAYEYADRLQKISKELSKDLLIIMRAYLEKP-RTTVGWKGLINDPDIDNSFQINKGLrisremftklv 143
                   044669******************************************************.9*********************************** PP

                   .T-EEEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE--EEEEEEE CS
  DAHP_synth_1  90 .glpiatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etkgiilcerg 172
                    +lpia+e+ld+is+q+l+d++++++iGArttesq ++elasgls+p+g+Kngtd    v+id+m+aaa++++fl+v          t+g+++++++
    CCD22728.1 144 eKLPIAGEMLDTISPQFLSDCFSLGAIGARTTESQLHRELASGLSFPIGFKNGTDgglqVSIDAMRAAAHEHYFLSVtkpgvtaivGTEGNKDTFVI 240
                   ************************************************************************************************* PP

                   EEEST.SSSSSCHCHHHHHHHHHHCTSS.......-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SST...GGGGBB CS
  DAHP_synth_1 173 lrggk.ktnrdvedvaavkilkeetgkl.......pvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsd...gkqalk 255
                   lrggk +tn+d e+v+ +k+++++++ +       ++m+D+sH+ns+kd+++q+kv+++++++++ G   ++GvmiEs+l +g+++++   g+  l 
    CCD22728.1 241 LRGGKnGTNFDSESVQITKQELKKAKLIdeqdtqrRIMIDCSHGNSSKDFRNQPKVAQSIYDQLSSGenaLCGVMIESNLVEGRQDVPpegGRAGLI 337
                   ****************99999999865477777889******************************************************99***** PP

                   CTCBHHHHHHHHHHHHHHH CS
  DAHP_synth_1 256 ygksetdacilkeltelll 274
                   yg+s+tdaci++e+te++l
    CCD22728.1 338 YGCSITDACISWETTEDVL 356
                   ***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2839.72
//
Query:       CCD22729.1  [L=58]
Description: hypothetical protein NDAI_0A05740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-08   32.2  31.3    1.4e-06   28.5  31.3    2.3  1  CYSTM     Cysteine-rich TM module stress tolerance


Domain annotation for each model (and alignments):
>> CYSTM  Cysteine-rich TM module stress tolerance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5  31.3   7.6e-11   1.4e-06       1      42 []       8      54 ..       6      54 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 7.6e-11
       CYSTM  1 ppqpgYyqqppvqe....qppqk.gdgGclagClaALcCCclcdecf 42
                +pqp+Yyqqp++q+    q p++ +d+Gcl++C+  LcC cl d c+
  CCD22729.1  8 QPQPMYYQQPQQQPvyiqQAPRRdNDRGCLGTCCRFLCCLCLIDLCC 54
                79****************777664777*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 479.94
//
Query:       CCD22730.1  [L=759]
Description: hypothetical protein NDAI_0A05750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-25   89.3   0.2    2.2e-25   89.3   0.2    1.8  2  Fungal_trans_2  Fungal specific transcription factor domain
    2.6e-07   30.6  12.2    5.2e-07   29.7  12.2    1.5  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2     0.063   5.7e+02     216     253 ..     181     225 ..     148     256 .. 0.59
   2 !   89.3   0.2   2.4e-29   2.2e-25       2     361 ..     326     745 ..     325     754 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.063
  Fungal_trans_2 216 d.......seleplsileeaseleqrllswkprssdlepdldete 253
                     +       se++ +s +e+as+ +++l+s+ p+ ++++++ ++ +
      CCD22730.1 181 QkssskssSEEIKDSTKESASNSNSELKSTLPNTNPETQPFSHIN 225
                     033323334555555555555555555544444444444444333 PP

  == domain 2  score: 89.3 bits;  conditional E-value: 2.4e-29
  Fungal_trans_2   2 lldyyldnvapllspvpes.snpfrkvllplalsnkallhallalsa..fhlqskgpkdslereakrykslalkelqealaelsstlsrnekykd 93 
                     +l+ +  +  +++ p+ ++  np r++ll +a ++  ll alla++a  +++ s++ +d  e++   y+s++l++l e  ++ s+       + +
      CCD22730.1 326 YLKVFYYDCLDSIAPFFQEqANPLRDILLSFAKKESYLLSALLAIGAsiTYRRSNNLED--EKNYCAYLSHCLSLLGEQFQNESNVIH----KIE 414
                     56666666677777766666*************************99334556777777..99999*****************99999....566 PP

  Fungal_trans_2  94 iLaaiLllcsieissgdvsdwrvhLeaatsliksrggskasssslsskarfllrifayldilssttlgrgpsfpseeyekllenkkeesdsg... 185
                      ++ + ++   +++   +s+wr+hL+++t+l+k+ +       + s+ ++    +f  +++++s ++  g+s+ +++ +++  +   ++d++   
      CCD22730.1 415 PIILTVIMLAWDCIYTMNSQWRSHLKGVTDLFKKINAG-----KSSKVINVAKCWFKVMETFASVSTVLGGSIMDDNDLDVIFD---PYDYQyvd 501
                     6666688999999999999******************9.....999******************99996666666666666666...33333334 PP

  Fungal_trans_2 186 .............ldplmGcsnslilliseisrLarekrsarkd..............................seleplsileeaseleqrll. 236
                                  ++ l G  +   l i+e+++  + +r+++k                                +l+  +i++ + ++ ++l+ 
      CCD22730.1 502 slkylnimtplneFNLLRGHKEDFDLVIKEVIKGLNSIRRSEKNdipkddgvlnknqdyliwsaqpntphdkekGSLSYFEIQKILVDIDKQLEy 596
                     4445555555444888****************9777766666666**************************999999999*************** PP

  Fungal_trans_2 237 swkprssdlepdldeterassls...................kdl.telfrlaaliylyrlvlglppsspevqelvkkllellellp....sspv 307
                     ++ ++s+++ p+++++ ++s+++                   +d+ ++   l+ l+ ++  +lg+p +sp vq++vk+ll+  + l+    +++ 
      CCD22730.1 597 EFIDKSGIIPPHSQSHPDNSHIEdyainlvtlrngktiaiswYDIsHQTQVLSFLLIVLLKLLGIPKESPIVQQVVKRLLSFFSFLDseapPHNS 691
                     ***********************************999977755565555555555666778*************************98765555 PP

  Fungal_trans_2 308 aiasLl.WplFiaGceavdeddRdfvrrrleeleqsrl.gnvrrarqvleevWrrr 361
                       ++ + ++ +iaG +a de+ Rd+vr+ ++  + +++ +  ++ ++ le+vW  +
      CCD22730.1 692 -RTCYCnFAVLIAGLNAIDEETRDVVRKYYDLNG-KKFqRLTEHNLNRLEKVWYSK 745
                     .666668***********************9999.888777888899999999665 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7  12.2   5.8e-11   5.2e-07       2      39 ..     130     167 ..     129     168 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 5.8e-11
                 S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39 
                 +C++C++++ KCd+ kP C +C++ln eC+++ +s+++
  CCD22730.1 130 GCTECKRRRMKCDETKPICWQCARLNRECVYILNSKNK 167
                 7*****************************88777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1379  (0.0769145); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 5286.57
//
Query:       CCD22731.1  [L=822]
Description: hypothetical protein NDAI_0A05760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-22   78.2  13.3    5.8e-16   59.2   0.1    3.1  3  PRP1_N    PRP1 splicing factor, N-terminal
    1.5e-20   72.1   0.0      0.013   16.3   0.0    9.6 11  TPR_14    Tetratricopeptide repeat
    6.3e-18   65.0   0.1     0.0037   17.7   0.0    6.5  6  TPR_19    Tetratricopeptide repeat
    7.1e-11   41.4  10.0      0.012   15.7   0.0    8.6  8  TPR_2     Tetratricopeptide repeat
    9.6e-11   41.3   7.5       0.21   12.0   0.0    8.1  9  TPR_17    Tetratricopeptide repeat
    7.6e-07   29.3   2.2        2.5    8.5   0.1    5.9  5  TPR_12    Tetratricopeptide repeat
    5.7e-06   26.9   0.0      0.085   13.5   0.0    4.8  5  TPR_16    Tetratricopeptide repeat
    2.4e-05   23.5   0.3      0.097   11.6   0.2    3.4  4  NARP1     NMDA receptor-regulated protein 1
    0.00028   20.0   1.2        1.4    7.8   0.3    3.5  3  ChAPs     ChAPs (Chs5p-Arf1p-binding proteins)
     0.0017   18.5   1.6       0.41   10.9   0.5    3.9  4  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
     0.0017   18.1  14.7      0.039   13.8   0.0    6.0  7  TPR_1     Tetratricopeptide repeat
     0.0021   18.1  19.9      0.033   14.4   0.2    6.3  6  TPR_8     Tetratricopeptide repeat
     0.0047   16.9   0.6         37    4.7   0.0    5.1  6  TPR_7     Tetratricopeptide repeat
     0.0085   16.7   6.3         32    5.5   0.1    5.9  5  TPR_6     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.028   13.9  10.9       0.24   10.8   0.2    4.5  5  SPO22     Meiosis protein SPO22/ZIP4 like
      0.085   12.6   5.3        1.6    8.5   0.0    4.9  7  TPR_11    TPR repeat
       0.11   12.7   0.0    1.3e+02    2.9   0.0    4.4  5  TPR_9     Tetratricopeptide repeat
       0.24   11.3   0.8         31    4.6   0.0    4.1  4  TPR_10    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> PRP1_N  PRP1 splicing factor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   3.2   1.6e-08   1.6e-05       1      21 [.      11      31 ..      11      49 .. 0.86
   2 !   59.2   0.1   5.8e-19   5.8e-16      73     148 .]      54     125 ..      35     125 .. 0.86
   3 ?   -1.6   0.3       3.1   3.1e+03     104     127 ..     157     178 ..     127     181 .. 0.68

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.6e-08
                ---S--HHHHHT------... CS
      PRP1_N  1 aPagYvaGlGRGAtGfttrsd 21
                +P+gYvaG+GRGAtGf+tr  
  CCD22731.1 11 PPPGYVAGVGRGATGFSTRGG 31
                8*****************965 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 5.8e-19
                 -------------HHHHHHHHHHHHHHTT-------......-HHHHHHHHHHHHHTT--HHHHHS----B-SS-H CS
      PRP1_N  73 ydedDeeAdriyeeiderlderrkkrreakekeelekvreekpkiqeqFadlkrkLaevseeeWeniPevgdltrk 148
                    d+eeA+++++ i+++l+++r ++ ++ ++++++      ++i +qFadlkr+La+vseeeW +iPe+gd+tr+
  CCD22731.1  54 DTTDEEEAEEVFAGIEKKLTSKRMHKTSNLSTTSRD----PISDIPHQFADLKRSLATVSEEEWLHIPEAGDTTRR 125
                 457999*****************9996665555554....7799*****************************997 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.1
                 -----......-HHHHHHHHHHHH CS
      PRP1_N 104 keelekvreekpkiqeqFadlkrk 127
                 +ee+ek+    +k+ + F dlkr+
  CCD22731.1 157 TEEREKI--LARKLDSGFDDLKRQ 178
                 3333322..236889999999997 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00049      0.49       1      40 [.     226     265 ..     226     269 .. 0.95
   2 ?   -1.3   0.0       5.6   5.6e+03      22      40 ..     279     297 ..     266     301 .. 0.76
   3 ?   -1.3   0.0       5.6   5.6e+03      22      40 ..     310     328 ..     309     331 .. 0.84
   4 ?    4.5   0.0     0.078        78      19      42 ..     338     361 ..     334     363 .. 0.90
   5 ?   -2.0   0.0       9.4   9.3e+03       9      28 ..     540     559 ..     533     565 .. 0.82
   6 ?    2.6   0.0      0.31   3.1e+02       8      31 ..     573     596 ..     566     605 .. 0.75
   7 !   13.6   0.0   9.6e-05     0.096       4      44 .]     608     649 ..     604     649 .. 0.91
   8 !   16.3   0.0   1.3e-05     0.013       4      43 ..     643     682 ..     641     683 .. 0.96
   9 ?    7.3   0.0      0.01        10       8      43 ..     716     751 ..     709     752 .. 0.89
  10 ?   -1.3   0.0       5.5   5.5e+03      23      40 ..     764     781 ..     762     784 .. 0.85
  11 !    8.0   0.0    0.0058       5.8       4      41 ..     779     816 ..     776     819 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00049
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPddaeawll 40 
                 p+a+la  +++ ++++++ A +l+++ ++ +P++ ++wl+
  CCD22731.1 226 PDAWLASIKLEDNARNFRLAKNLAEEGCSNCPKSVDLWLE 265
                 789***********************************86 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 5.6
      TPR_14  22 allrralalaPddaeawll 40 
                  l   a++ +P++ ++wl 
  CCD22731.1 279 VLVTSAIRFNPQSVALWLK 297
                 566679999*******985 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 5.6
      TPR_14  22 allrralalaPddaeawll 40 
                 ++ r+al+  P ++e+w l
  CCD22731.1 310 RVVRKALQEMPYSEELWKL 328
                 6789999999******987 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.078
      TPR_14  19 eAiallrralalaPddaeawllla 42 
                 e +++l+ra+a  P+++ +w +l 
  CCD22731.1 338 EGLKILERAVAFVPKSLSLWKALI 361
                 5789****************9986 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 9.4
      TPR_14   9 eallalGdpdeAiallrral 28 
                 e+++ ++d ++A+ ++++al
  CCD22731.1 540 EICRDSQDSEKALSIFNKAL 559
                 5788999999**99999997 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.31
      TPR_14   8 aeallalGdpdeAiallrralala 31 
                  ++l +lG++deA+ l+  +l+++
  CCD22731.1 573 FKLLCTLGRFDEAEILATNILEKN 596
                 5677789*******9999999975 PP

  == domain 7  score: 13.6 bits;  conditional E-value: 9.6e-05
      TPR_14   4 llalaeallalGdpdeAiallrra.lalaPddaeawlllaql 44 
                 ++ +a++l+ +G+ ++Ai+ l +  l ++P++  ++l+l+q+
  CCD22731.1 608 HYYYASLLRYNGQNEKAIQFLSEScLPHFPKNYKFYLQLGQI 649
                 799********************5388************996 PP

  == domain 8  score: 16.3 bits;  conditional E-value: 1.3e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +l+l++++    d++++++++    +  Pd++ +w++la+
  CCD22731.1 643 YLQLGQIYIDTKDYKTSREIYLSGTKELPDSPLLWIYLAR 682
                 89*************************************8 PP

  == domain 9  score: 7.3 bits;  conditional E-value: 0.01
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 a+ + +l+++++A+ + ++ l ++P+++ +w +  +
  CCD22731.1 716 AQMESRLENYQQAELIVDQGLMKFPKSPGLWVERIR 751
                 788899*************************99877 PP

  == domain 10  score: -1.3 bits;  conditional E-value: 5.5
      TPR_14  23 llrralalaPddaeawll 40 
                 ++++al++  +d +++l+
  CCD22731.1 764 IFQDALKKTGNDHAILLE 781
                 799*******99999876 PP

  == domain 11  score: 8.0 bits;  conditional E-value: 0.0058
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 ll+++  l+   +++++++ ++ra++++P   + w+ l
  CCD22731.1 779 LLEIGMSLYSESQYQASLKWFERAVRKNPRYGDSWIWL 816
                 667777888999*****************665555444 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       4.4   4.4e+03      14      34 ..     312     331 ..     309     336 .. 0.81
   2 ?    6.4   0.1     0.013        13      11      60 ..     340     385 ..     332     386 .. 0.86
   3 !   15.6   0.0   1.7e-05     0.017       3      55 ..     544     596 ..     543     603 .. 0.90
   4 !   17.7   0.0   3.7e-06    0.0037       2      62 ..     616     677 ..     615     682 .. 0.92
   5 ?    4.5   0.0     0.051        51      16      59 ..     700     743 ..     689     749 .. 0.76
   6 !   11.6   0.0   0.00031      0.31       2      36 ..     787     821 ..     786     822 .] 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.4
      TPR_19  14 leqalqedpknaearllLAea 34 
                  ++alqe p ++e++  LA+ 
  CCD22731.1 312 VRKALQEMPYSEELWK-LAIK 331
                 5799*****9999998.7665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.013
      TPR_19  11 lalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddar 60 
                 l++le+a +  pk++ ++     al++  ++++A+  L+++ +  p+da+
  CCD22731.1 340 LKILERAVAFVPKSLSLWK----ALINIQEPAAAKVSLKKARKYLPNDAD 385
                 7888888888888888888....99*********************9975 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 1.7e-05
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeed 55 
                 +++d + Al+++ +al   p+++ ++ +  ++l  lg++deAe l   ++e++
  CCD22731.1 544 DSQDSEKALSIFNKALYILPESSKLLSAKFKLLCTLGRFDEAEILATNILEKN 596
                 67999*************************************98877777766 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 3.7e-06
      TPR_19   2 laegdyaeAlalleqa.lqedpknaearllLAeallalgqldeAealLdalpeedpddarya 62 
                  ++g+ + A+++l++  l + pkn    l+L ++++ +++++  +++     +e pd++ ++
  CCD22731.1 616 RYNGQNEKAIQFLSEScLPHFPKNYKFYLQLGQIYIDTKDYKTSREIYLSGTKELPDSPLLW 677
                 679************779***************************************88765 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.051
      TPR_19  16 qalqedpknaearllLAeallalgqldeAealLdalpeedpdda 59 
                  a+ ++p  + +++  A+    l ++++Ae ++d+ + ++p+++
  CCD22731.1 700 TAILKNPTLDILLITKAQMESRLENYQQAELIVDQGLMKFPKSP 743
                 55555555555555669999999**************9999965 PP

  == domain 6  score: 11.6 bits;  conditional E-value: 0.00031
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeall 36 
                 + e +y++ l+ +e+a  ++p +++ +++L +++ 
  CCD22731.1 787 YSESQYQASLKWFERAVRKNPRYGDSWIWLFRCMK 821
                 6789*****************************85 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.85   8.5e+02      10      34 .]     359     383 ..     358     383 .. 0.86
   2 ?    5.0   0.0     0.032        32      10      33 ..     541     564 ..     540     565 .. 0.87
   3 ?    1.3   0.0      0.48   4.8e+02      12      30 ..     577     595 ..     574     597 .. 0.79
   4 !    7.5   0.5     0.005         5       3      26 ..     607     630 ..     605     632 .. 0.90
   5 ?    6.1   0.0     0.013        13       3      25 ..     642     664 ..     640     673 .. 0.81
   6 ?   -0.1   0.0       1.4   1.4e+03      13      33 ..     687     707 ..     685     708 .. 0.90
   7 ?    0.4   0.0      0.96   9.6e+02       4      32 ..     712     740 ..     710     742 .. 0.76
   8 !   15.7   0.0   1.2e-05     0.012       3      33 ..     778     808 ..     776     809 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.85
       TPR_2  10 ayyklgdyeeAleafekAleldPnn 34 
                 a+++ ++++ A+  ++kA ++ Pn+
  CCD22731.1 359 ALINIQEPAAAKVSLKKARKYLPND 383
                 5677788999***********9997 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.032
       TPR_2  10 ayyklgdyeeAleafekAleldPn 33 
                 +++ ++d e+Al  f+kAl + P+
  CCD22731.1 541 ICRDSQDSEKALSIFNKALYILPE 564
                 57788999***********99986 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.48
       TPR_2  12 yklgdyeeAleafekAlel 30 
                   lg+++eA+ +    le 
  CCD22731.1 577 CTLGRFDEAEILATNILEK 595
                 669******9888877776 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.005
       TPR_2   3 alynlGlayyklgdyeeAleafek 26 
                  +y+ + +++++g+ e+A++++ +
  CCD22731.1 607 FHYYYASLLRYNGQNEKAIQFLSE 630
                 79*****************99876 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.013
       TPR_2   3 alynlGlayyklgdyeeAleafe 25 
                  + +lG++y+  +dy+  +e + 
  CCD22731.1 642 FYLQLGQIYIDTKDYKTSREIYL 664
                 7899************9999886 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 1.4
       TPR_2  13 klgdyeeAleafekAleldPn 33 
                 +l++  +A+  ++ A+  +P+
  CCD22731.1 687 YLKNTIRARSELDTAILKNPT 707
                 7889999************97 PP

  == domain 7  score: 0.4 bits;  conditional E-value: 0.96
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                 l   ++   +l +y++A+   ++ l   P
  CCD22731.1 712 LITKAQMESRLENYQQAELIVDQGLMKFP 740
                 5667888889*******977777776666 PP

  == domain 8  score: 15.7 bits;  conditional E-value: 1.2e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 +l ++G+++y   +y+  l++fe+A++ +P+
  CCD22731.1 778 ILLEIGMSLYSESQYQASLKWFERAVRKNPR 808
                 57889*************************7 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.8   2.8e+03       2      17 ..     249     264 ..     248     266 .. 0.82
   2 ?   -2.6   0.0       9.9   9.9e+03       5      16 ..     284     295 ..     283     297 .. 0.87
   3 ?    4.4   0.0      0.06        60       2      33 ..     555     586 ..     554     587 .. 0.94
   4 !    7.9   0.4    0.0044       4.3      15      34 .]     607     626 ..     606     626 .. 0.94
   5 !   12.0   0.0   0.00021      0.21       5      34 .]     632     661 ..     630     661 .. 0.91
   6 ?    0.3   0.0       1.2   1.2e+03      10      22 ..     671     683 ..     662     695 .. 0.81
   7 ?    4.9   0.0      0.04        40       3      33 ..     699     729 ..     697     729 .. 0.94
   8 ?   -2.4   0.0       8.3   8.3e+03       2      30 ..     765     793 ..     764     796 .. 0.78
   9 ?    6.0   0.0     0.018        17       2      23 ..     799     820 ..     798     822 .] 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.8
      TPR_17   2 ylkaleldPnnadayn 17 
                  ++   ++P+++d++ 
  CCD22731.1 249 AEEGCSNCPKSVDLWL 264
                 5677789*******96 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.9
      TPR_17   5 aleldPnnaday 16 
                 a++ +P ++ ++
  CCD22731.1 284 AIRFNPQSVALW 295
                 899****99988 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.06
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 + kal + P +++++  + +ll+ +G++++A+
  CCD22731.1 555 FNKALYILPESSKLLSAKFKLLCTLGRFDEAE 586
                 7899999***********************97 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0044
      TPR_17  15 aynnLAelllknGdlmtArq 34 
                 +++++A ll+ nG+ ++A+q
  CCD22731.1 607 FHYYYASLLRYNGQNEKAIQ 626
                 69****************98 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 0.00021
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtArq 34 
                 +l + P+n ++y +L++++   +d++t r+
  CCD22731.1 632 CLPHFPKNYKFYLQLGQIYIDTKDYKTSRE 661
                 77799********************99885 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 1.2
      TPR_17  10 PnnadaynnLAel 22 
                 P+++ ++ +LA++
  CCD22731.1 671 PDSPLLWIYLART 683
                 99*********97 PP

  == domain 7  score: 4.9 bits;  conditional E-value: 0.04
      TPR_17   3 lkaleldPnnadaynnLAelllknGdlmtAr 33 
                   a+ ++P+   ++  +A+  +++ ++++A+
  CCD22731.1 699 DTAILKNPTLDILLITKAQMESRLENYQQAE 729
                 579**************************96 PP

  == domain 8  score: -2.4 bits;  conditional E-value: 8.3
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlm 30 
                 ++ al++  n+   + + +  l++  +++
  CCD22731.1 765 FQDALKKTGNDHAILLEIGMSLYSESQYQ 793
                 88999999999999888888777666665 PP

  == domain 9  score: 6.0 bits;  conditional E-value: 0.018
      TPR_17   2 ylkaleldPnnadaynnLAell 23 
                 +++a++++P + d++  L +++
  CCD22731.1 799 FERAVRKNPRYGDSWIWLFRCM 820
                 89*************9997765 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.12   1.2e+02      55      72 ..     542     559 ..     540     564 .. 0.54
   2 !    8.5   0.1    0.0025       2.5      12      71 ..     575     631 ..     565     632 .. 0.88
   3 ?    1.7   0.0      0.33   3.3e+02       7      26 ..     644     663 ..     641     666 .. 0.58
   4 ?    2.3   0.0      0.21   2.1e+02      46      68 ..     710     732 ..     697     737 .. 0.73
   5 !    6.6   0.0    0.0093       9.2       5      30 ..     778     803 ..     773     820 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.12
      TPR_12  55 yralgryeeAlelleeal 72 
                 +r + + e+Al+++++al
  CCD22731.1 542 CRDSQDSEKALSIFNKAL 559
                 444455556666666555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0025
      TPR_12  12 vlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 +l+ lgr+deA+ l    le   ++ +p+   +    + ++ l+r+ g+ e+A+++l e+
  CCD22731.1 575 LLCTLGRFDEAEILATNILEKN-SVDDPEG--VEKFHYYYASLLRYNGQNEKAIQFLSES 631
                 57899*************9999.6866766..888999999999**********999886 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.33
      TPR_12   7 nnlaavlrrlgrydeAlell 26 
                  +l++++   ++y  ++e++
  CCD22731.1 644 LQLGQIYIDTKDYKTSREIY 663
                 34566666666666666555 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.21
      TPR_12  46 ttlrnLgrlyralgryeeAlell 68 
                 + l++ +++ ++l++y++A+ + 
  CCD22731.1 710 ILLITKAQMESRLENYQQAELIV 732
                 55677788888888888888665 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0093
      TPR_12   5 alnnlaavlrrlgrydeAlellekal 30 
                 +l ++++ l+   +y+ +l+++e+a+
  CCD22731.1 778 ILLEIGMSLYSESQYQASLKWFERAV 803
                 34478888888888888888888885 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.8   1.8e+03      21      40 ..     216     232 ..     214     250 .. 0.70
   2 ?    3.7   0.0     0.097        96      10      65 ..     579     637 ..     571     640 .. 0.76
   3 ?    3.4   0.0      0.12   1.2e+02      27      68 .]     636     674 ..     612     674 .. 0.83
   4 ?   -2.4   0.0         8     8e+03      41      55 ..     716     730 ..     693     745 .. 0.56
   5 !   13.5   0.0   8.6e-05     0.085      20      65 ..     765     807 ..     762     810 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.8
      TPR_16  21 eaalkrdpssPdaaeAllll 40 
                 + ++++    P+ ++A+l++
  CCD22731.1 216 QSYRRSE---PRKPDAWLAS 232
                 6677777...6666777765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.097
      TPR_16  10 agdyddAaaaleaalkrdp.ssPd.aaeAllllgdaalrqgrlaeAaalyraal.raap 65 
                 +g++d+A+ +++  l++++ ++P+    ++++++ ++  +g  ++A++++ +   ++ p
  CCD22731.1 579 LGRFDEAEILATNILEKNSvDDPEgVEKFHYYYASLLRYNGQNEKAIQFLSESClPHFP 637
                 79999999999666666631455566679999999999999999999999886655555 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.12
      TPR_16  27 dpssPdaaeAllllgdaalrqgrlaeAaalyraalraapdap 68 
                 +   P ++ ++l lg+++   ++++  ++ y++  ++ pd+p
  CCD22731.1 636 F---PKNYKFYLQLGQIYIDTKDYKTSREIYLSGTKELPDSP 674
                 5...889999******************99988888888876 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 8
      TPR_16  41 gdaalrqgrlaeAaa 55 
                 +++  r+ +++ A+ 
  CCD22731.1 716 AQMESRLENYQQAEL 730
                 455555555555553 PP

  == domain 5  score: 13.5 bits;  conditional E-value: 8.6e-05
      TPR_16  20 leaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 ++ alk+      +++ ll+ g +++  + +++ + ++++a+r  p
  CCD22731.1 765 FQDALKKT---GNDHAILLEIGMSLYSESQYQASLKWFERAVRKNP 807
                 899*****...9999***************************9887 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.6   1.6e+03     213     259 ..     462     508 ..     457     510 .. 0.89
   2 !   11.6   0.2   9.7e-05     0.097       8      69 ..     536     597 ..     529     640 .. 0.79
   3 ?    1.7   0.0     0.094        94     195     243 ..     608     657 ..     599     670 .. 0.82
   4 !    6.9   0.0    0.0025       2.5     184     251 ..     668     734 ..     652     737 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.6
                 HHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCTTT- CS
       NARP1 213 eyidkaiehtptlvelyltKarilkhaGdlkkAaevmeearklDlaD 259
                 e++++  + +p  + ly  K  ++ h+ dl+     +e    lD++D
  CCD22731.1 462 ECVNELKSFEPCRTKLYCFKTLLINHQTDLNLWNIFIEACDLLDNKD 508
                 56777777889999*****************9999999999999998 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 9.7e-05
                 HHHHHHHHHHTHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T CS
       NARP1   8 LyknqiieeagkleeAlehLeekekqivDklavketkaelllkLgrkeeAeatyeaLlernp 69 
                  y + i++++++ e+Al  ++++   + +  +++ +k +ll+ Lgr++eAe + +++le+n+
  CCD22731.1 536 KYGKEICRDSQDSEKALSIFNKALYILPESSKLLSAKFKLLCTLGRFDEAEILATNILEKNS 597
                 49999*******************************************************96 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.094
                 HHHHHHHHHHHT-SHHHHHHH.HHHHHH-TT-HHHHHHHHHHHHHTT-HH CS
       NARP1 195 lyflAqhydklgsrekAleyi.dkaiehtptlvelyltKarilkhaGdlk 243
                 +y+ A    + g+ ekA++++ ++++ h p+   +yl+ ++i+  + d k
  CCD22731.1 608 HYYYASLLRYNGQNEKAIQFLsESCLPHFPKNYKFYLQLGQIYIDTKDYK 657
                 6888899999999******9845699999******999999987666655 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0025
                 ----SSHHHHHHHHHHHHHHHHT-SH.HHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHH CS
       NARP1 184 ekepesallwvlyflAqhydklgsre.kAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmee 251
                 ++ p s llw+  +lA   + + + + +A + +d+ai ++ptl  l +tKa++  +  + ++A  ++++
  CCD22731.1 668 KELPDSPLLWI--YLARTDEIYLKNTiRARSELDTAILKNPTLDILLITKAQMESRLENYQQAELIVDQ 734
                 44566778885..56666555444445*****************************9999999888876 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.3    0.0014       1.4     183     277 ..     272     363 ..     260     367 .. 0.89
   2 !    5.7   0.0    0.0063       6.3     177     285 ..     540     657 ..     533     662 .. 0.77
   3 ?    2.8   0.0     0.049        49     206     277 ..     747     819 ..     701     822 .] 0.78

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0014
                 T-HHHHHHHHHHHHTT-GGGHHHHHHHHHHTT-HHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHH CS
       ChAPs 183 krydralellekLkeeepevvillarvllladeEvdavkllneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkv 277
                 + ++r+  l+   ++ +p+ v+l  + + l +e ++  +++ ++l+e + + el +l  ++  +k +    l++ +rav + P   + W  L ++
  CCD22731.1 272 ADLHRCKVLVTSAIRFNPQSVALWLKGVELENEALNKYRVVRKALQEMPYSEELWKLAIKYEKDKVE---GLKILERAVAFVPKSLSLWKALINI 363
                 5688999999999999*******9999999****************************999766655...69999***************99875 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0063
                 HHHHHHT-HHHHHHHHHHHHTT-GGGHHHH.HHHHHHT......T-HHHHHHHHHHHH-SSS-HHH.HHHHHHHHHHHSS--HHHHH.HHHHHHHH-TT CS
       ChAPs 177 klvrltkrydralellekLkeeepevvill.arvllla......deEvdavkllneeleeeekdae.lLllqaefllskkkeelAle.vakravksaPs 266
                 ++ r ++  ++al++++k     pe + ll a+  ll+      + E+ a ++l+++  ++++ +e +    a  l  + ++e A++ ++++     P 
  CCD22731.1 540 EICRDSQDSEKALSIFNKALYILPESSKLLsAKFKLLCtlgrfdEAEILATNILEKNSVDDPEGVEkFHYYYASLLRYNGQNEKAIQfLSESCLPHFPK 638
                 567888999999999999999999999888467777763344435688888888877767776655055566777777777777766267888999*** PP

                 -HHHHHHHHHHHHHTT-HH CS
       ChAPs 267 efktWalLvkvYikledie 285
                 ++k + +L ++Yi+ +d++
  CCD22731.1 639 NYKFYLQLGQIYIDTKDYK 657
                 ****************987 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.049
                 HHHHHHHTT-HHHHHH.HHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHHHHHH CS
       ChAPs 206 larvllladeEvdavk.llneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWalLvkv 277
                 + r+ ll ++  +  k + +++l+++ +d ++Ll     l s+++++  l+  +rav+  P     W+ L ++
  CCD22731.1 747 VERIRLLGNKRASQRKtIFQDALKKTGNDHAILLEIGMSLYSESQYQASLKWFERAVRKNPRYGDSWIWLFRC 819
                 56777777777766651557899******99888888899***************************998765 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.5   0.00041      0.41       4      73 ..     581     657 ..     578     665 .. 0.75
   2 ?    3.5   0.0     0.081        81      11      66 ..     628     684 ..     627     701 .. 0.75
   3 ?   -1.1   0.0       2.2   2.2e+03      59      76 ..     712     729 ..     688     735 .. 0.71
   4 ?    2.8   0.0      0.14   1.4e+02      20      53 ..     772     807 ..     746     820 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00041
                 -HHHHHHHHHHHH.....HHH--HHH.HHHHHHHHHHTT-HHHHHHHHHCT..SHHHC-HHHHHHHHHHHHHTT-HH CS
      ANAPC3   4 nyknAiflaerlla....aetesped.ayllAlclylngqykrAyellrka..klnskslgcrylfAqcllkLkkye 73 
                 ++++A++la  +l+     ++e  e   y++A  l  ngq ++A+++l+++     +k+ +  + ++q +++ k y+
  CCD22731.1 581 RFDEAEILATNILEknsvDDPEGVEKfHYYYASLLRYNGQNEKAIQFLSESclPHFPKNYKFYLQLGQIYIDTKDYK 657
                 7899*********443345555555567778*****************99944444555588888888888888887 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.081
                 HHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHH CS
      ANAPC3  11 laerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcl 66 
                 l+e  l   +++++  + l++ +  +++yk+  e++ +  k+ + s+  ++ +A++ 
  CCD22731.1 628 LSESCLPHFPKNYKFYLQLGQIYIDTKDYKTSREIYLSGtKELPDSPLLWIYLARTD 684
                 5566665566777777789************99999888888888888888888765 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.2
                 HHHHHHHHHHTT-HHHHH CS
      ANAPC3  59 rylfAqcllkLkkyeeAi 76 
                 ++++Aq    L++y++A+
  CCD22731.1 712 LITKAQMESRLENYQQAE 729
                 455678888999999997 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.14
                 H--HHHHHHH.HHHHHHTT-HHHHHHHHHCT.SHHH CS
      ANAPC3  20 tespedayll.AlclylngqykrAyellrka.klns 53 
                 t ++ +++l  + +ly+ +qy+  ++++++a ++n+
  CCD22731.1 772 TGNDHAILLEiGMSLYSESQYQASLKWFERAvRKNP 807
                 44444444435999**************99966665 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       6.3   6.3e+03      15      34 .]     364     383 ..     359     383 .. 0.79
   2 ?    4.5   0.0     0.034        34      11      33 ..     542     564 ..     540     565 .. 0.85
   3 ?   -1.0   0.0       1.8   1.8e+03      13      21 ..     578     586 ..     575     596 .. 0.83
   4 ?    1.5   0.3       0.3     3e+02       8      25 ..     612     629 ..     606     631 .. 0.83
   5 ?    3.5   0.2     0.068        68       2      19 ..     641     658 ..     640     664 .. 0.85
   6 ?   -1.9   0.0       3.4   3.4e+03       8      21 ..     716     729 ..     712     729 .. 0.74
   7 !   13.8   0.0   3.9e-05     0.039       4      34 .]     779     809 ..     776     809 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.3
                 T-HHHHHHHHHHHHHHSTTH CS
       TPR_1  15 gkydeAleyyekALelnPnn 34 
                 +++  A    +kA +  Pn+
  CCD22731.1 364 QEPAAAKVSLKKARKYLPND 383
                 67788999999999988886 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.034
                 HHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  11 yfklgkydeAleyyekALelnPn 33 
                 ++  ++ ++Al  ++kAL + P+
  CCD22731.1 542 CRDSQDSEKALSIFNKALYILPE 564
                 5666789************9986 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.8
                 HTT-HHHHH CS
       TPR_1  13 klgkydeAl 21 
                  lg++deA+
  CCD22731.1 578 TLGRFDEAE 586
                 59******7 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.3
                 HHHHHHTT-HHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyye 25 
                 + +++++g+ ++A+++ +
  CCD22731.1 612 ASLLRYNGQNEKAIQFLS 629
                 567899********9976 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.068
                 HHHHHHHHHHHHTT-HHH CS
       TPR_1   2 kalynlGnayfklgkyde 19 
                 k + +lG++y   ++y+ 
  CCD22731.1 641 KFYLQLGQIYIDTKDYKT 658
                 6799************85 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 3.4
                 HHHHHHTT-HHHHH CS
       TPR_1   8 GnayfklgkydeAl 21 
                 +++  +l++y++A+
  CCD22731.1 716 AQMESRLENYQQAE 729
                 56667889999995 PP

  == domain 7  score: 13.8 bits;  conditional E-value: 3.9e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPnn 34 
                 l  +G+ +++  +y+  l+ +e+A++ nP +
  CCD22731.1 779 LLEIGMSLYSESQYQASLKWFERAVRKNPRY 809
                 6789*************************76 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1         8     8e+03      10      27 ..     359     376 ..     358     378 .. 0.84
   2 !    6.7   0.1    0.0099       9.9      10      30 ..     541     561 ..     533     564 .. 0.88
   3 ?   -2.6   0.0       9.2   9.2e+03      14      21 ..     579     586 ..     578     588 .. 0.86
   4 ?    3.1   0.3      0.14   1.4e+02       7      25 ..     611     629 ..     606     632 .. 0.86
   5 !   14.4   0.2   3.3e-05     0.033       2      25 ..     641     664 ..     640     668 .. 0.91
   6 ?    4.1   0.0     0.065        65       3      29 ..     778     804 ..     776     809 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 8
                 HHHHTT-HHHHHHHHHHH CS
       TPR_8  10 iylklgdyeeAkeyyeka 27 
                 ++++ ++  +Ak +++ka
  CCD22731.1 359 ALINIQEPAAAKVSLKKA 376
                 5677888899*****998 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0099
                 HHHHTT-HHHHHHHHHHHHHH CS
       TPR_8  10 iylklgdyeeAkeyyekalel 30 
                 i+++ +d e+A + ++kal++
  CCD22731.1 541 ICRDSQDSEKALSIFNKALYI 561
                 788999*************87 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 9.2
                 TT-HHHHH CS
       TPR_8  14 lgdyeeAk 21 
                 lg+++eA+
  CCD22731.1 579 LGRFDEAE 586
                 9******7 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.14
                 HHHHHHHTT-HHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyye 25 
                  +s+++  g+ e+A++++ 
  CCD22731.1 611 YASLLRYNGQNEKAIQFLS 629
                 68999***********986 PP

  == domain 5  score: 14.4 bits;  conditional E-value: 3.3e-05
                 CHHHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyye 25 
                 + y++lg+iy++++dy+ + e y 
  CCD22731.1 641 KFYLQLGQIYIDTKDYKTSREIYL 664
                 78*******************996 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.065
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 +++ +g+ + +  +y+++ +++e+a++
  CCD22731.1 778 ILLEIGMSLYSESQYQASLKWFERAVR 804
                 5778999******************97 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.08        79       8      26 ..     541     559 ..     540     567 .. 0.86
   2 ?   -1.0   0.0       2.3   2.3e+03       9      19 ..     576     586 ..     574     602 .. 0.81
   3 ?   -1.4   0.1       3.2   3.2e+03       6      22 ..     612     628 ..     610     630 .. 0.85
   4 ?    4.7   0.0     0.037        37       2      23 ..     643     664 ..     643     674 .. 0.88
   5 ?   -2.3   0.0       6.4   6.4e+03      10      19 ..     720     729 ..     716     737 .. 0.84
   6 ?    0.6   0.0      0.75   7.4e+02      10      32 ..     787     807 ..     779     808 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.08
       TPR_7   8 lysrlGdyeeAielyeqsL 26 
                 ++++ +d e+A++++ ++L
  CCD22731.1 541 ICRDSQDSEKALSIFNKAL 559
                 89*************9966 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.3
       TPR_7   9 ysrlGdyeeAi 19 
                  + lG+++eA+
  CCD22731.1 576 LCTLGRFDEAE 586
                 6789******8 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 3.2
       TPR_7   6 arlysrlGdyeeAiely 22 
                 a+l +  G+ e+Ai+++
  CCD22731.1 612 ASLLRYNGQNEKAIQFL 628
                 67888899******985 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.037
       TPR_7   2 LlnLarlysrlGdyeeAielye 23 
                 +l+L+++y +  dy++  e+y 
  CCD22731.1 643 YLQLGQIYIDTKDYKTSREIYL 664
                 789*************999996 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 6.4
       TPR_7  10 srlGdyeeAi 19 
                 srl +y++A+
  CCD22731.1 720 SRLENYQQAE 729
                 68999**997 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.75
       TPR_7  10 srlGdyeeAielyeqsLaltkdp 32 
                  ++ +y+  ++ +e+  a++k p
  CCD22731.1 787 YSESQYQASLKWFER--AVRKNP 807
                 45689**********..999876 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       7.5   7.5e+03      11      32 ..     361     382 ..     357     383 .. 0.77
   2 ?    2.7   0.0      0.25   2.4e+02       9      33 .]     542     565 ..     535     565 .. 0.82
   3 ?    2.9   0.1      0.21   2.1e+02       3      23 ..     609     628 ..     608     630 .. 0.69
   4 ?    3.3   0.0      0.16   1.6e+02       3      23 ..     643     663 ..     643     673 .. 0.86
   5 ?    5.5   0.1     0.032        32       3      32 ..     779     808 ..     777     809 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 7.5
                 HH.HHHHHHHHHHHHHHHHH-TT CS
       TPR_6  11 rk.lgdtdkAlealerlikeYPd 32 
                 ++ + ++++A+  l++ +k  P+
  CCD22731.1 361 INiQ-EPAAAKVSLKKARKYLPN 382
                 5534.889999999999998887 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   9 syrklgdtdkAlealerlikeYPdS 33 
                 ++ ++ d++kAl ++++ +   P+S
  CCD22731.1 542 CRDSQ-DSEKALSIFNKALYILPES 565
                 55668.***********98776665 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAleal 23 
                 +y++ l+++++ + +kA++ l
  CCD22731.1 609 YYYASLLRYNG-QNEKAIQFL 628
                 34555555556.******987 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAleal 23 
                 +++l++ y+ ++d+ +++e++
  CCD22731.1 643 YLQLGQIYIDTKDYKTSREIY 663
                 689*******99*******99 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.032
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYPd 32 
                 l+ +++s+++  +++++l+ +er +++ P 
  CCD22731.1 779 LLEIGMSLYSESQYQASLKWFERAVRKNPR 808
                 899*******88***************995 PP

>> SPO22  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.011        11     125     177 ..     422     476 ..     386     499 .. 0.83
   2 ?    1.0   0.1      0.25   2.5e+02      32      72 ..     527     568 ..     521     606 .. 0.80
   3 ?   -1.6   0.0       1.5   1.5e+03       6      62 ..     580     631 ..     577     632 .. 0.68
   4 ?   -0.2   0.0      0.55   5.5e+02      81     139 ..     702     759 ..     656     775 .. 0.75
   5 ?   10.8   0.2   0.00024      0.24      37      63 ..     777     803 ..     759     804 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.011
       SPO22 125 llllklkill...kreadeeeieealeemidsvelseanfklilslikrlaeksaa 177
                 + ll lk +l   ++  dee+++ +++ +++ + l+e  ++ +++++k++   +++
  CCD22731.1 422 VQLLSLKQWLekaRKLEDEEKYKLTFMTLLSVI-LAEYPLEECVNELKSFEPCRTK 476
                 456777777788899999************655.8*************99654444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.25
       SPO22  32 aeeLarllyniGksll.skkkyeeavkWLqraldilekqese 72 
                 +++  +l++++Gk++  +++++e+a+  +++al il ++++ 
  CCD22731.1 527 IKKNQDLILKYGKEICrDSQDSEKALSIFNKALYILPESSKL 568
                 5666689999*****999999999999999999999855443 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.5
       SPO22   6 gdldlAehmlskakceenllrldpeeaeeLarllyniGksllskkkyeeavkWLqra 62 
                 g++d Ae++ +   + e  +  dpe++e+ +   y ++  l  ++++e+a+++L+++
  CCD22731.1 580 GRFDEAEILATN--ILEKNSVDDPEGVEKFH---YYYASLLRYNGQNEKAIQFLSES 631
                 678888888888..45555555666666644...44444445689999999999987 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.55
       SPO22  81 elrlsvlrl..larayleldqeesyekalkavellqkeygkkehpsllllklkillkread 139
                  l++ +l    +++a +e +  e+y++a+ +v++   +++    p l++ ++++l ++ a+
  CCD22731.1 702 ILKNPTLDIllITKAQME-SRLENYQQAELIVDQGLMKFP--KSPGLWVERIRLLGNKRAS 759
                 555555543226778885.8889**********9999999..7888888888888766655 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.00024
       SPO22  37 rllyniGksllskkkyeeavkWLqral 63 
                  +l++iG sl+s+++y++++kW++ra 
  CCD22731.1 777 AILLEIGMSLYSESQYQASLKWFERAV 803
                 579999****************99995 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.2   3.2e+03      20      32 ..     284     296 ..     283     297 .. 0.85
   2 ?   -3.5   0.1         9   8.9e+03      16      29 ..     372     385 ..     369     386 .. 0.85
   3 ?   -3.6   0.0       9.5   9.5e+03       4      21 ..     542     559 ..     541     564 .. 0.77
   4 ?    1.3   0.0      0.29   2.9e+02       3      15 ..     614     626 ..     612     632 .. 0.82
   5 ?    0.4   0.0      0.53   5.3e+02      25      38 ..     637     650 ..     636     678 .. 0.85
   6 ?   -3.0   0.2         6     6e+03      14      20 ..     722     728 ..     722     729 .. 0.88
   7 ?    8.5   0.0    0.0016       1.6       3      30 ..     785     812 ..     783     816 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.2
      TPR_11  20 AlkldPdnaeayy 32 
                 A++++P+++ +++
  CCD22731.1 284 AIRFNPQSVALWL 296
                 9******998876 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9
      TPR_11  16 aYkkAlkldPdnae 29 
                 ++kkA k+ P++a+
  CCD22731.1 372 SLKKARKYLPNDAD 385
                 689999999**998 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 9.5
      TPR_11   4 yyeqGkyeeAieaYkkAl 21 
                 +++ ++ e+A+  ++kAl
  CCD22731.1 542 CRDSQDSEKALSIFNKAL 559
                 677888899998889998 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.29
      TPR_11   3 ayyeqGkyeeAie 15 
                 +++  G++e+Ai+
  CCD22731.1 614 LLRYNGQNEKAIQ 626
                 57889*******8 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.53
      TPR_11  25 PdnaeayynLGlay 38 
                 P+n  +y+ LG++y
  CCD22731.1 637 PKNYKFYLQLGQIY 650
                 67778888888888 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 6
      TPR_11  14 ieaYkkA 20 
                 +e+Y++A
  CCD22731.1 722 LENYQQA 728
                 699***9 PP

  == domain 7  score: 8.5 bits;  conditional E-value: 0.0016
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaea 30 
                  +y+  +y ++++++++A++ +P + + 
  CCD22731.1 785 SLYSESQYQASLKWFERAVRKNPRYGDS 812
                 689********************98665 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.58   5.8e+02       8      33 ..     333     358 ..     327     364 .. 0.87
   2 ?    2.9   0.0      0.13   1.3e+02       2      32 ..     539     569 ..     539     586 .. 0.77
   3 ?   -1.5   0.0       2.9   2.9e+03      43      71 ..     689     717 ..     646     719 .. 0.64
   4 ?    2.0   0.0      0.24   2.4e+02       7      35 ..     721     749 ..     715     754 .. 0.89
   5 ?   -0.9   0.0       1.8   1.8e+03      28      61 ..     775     808 ..     772     812 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.58
       TPR_9   8 eedweralavverllllaPddpeerr 33 
                 e+d  + l+++er +++ P++ +++ 
  CCD22731.1 333 EKDKVEGLKILERAVAFVPKSLSLWK 358
                 5677889***************9995 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.13
       TPR_9   2 kaiaireedweralavverllllaPddpeer 32 
                 k+i   ++d+e+al + +  l++ P++  ++
  CCD22731.1 539 KEICRDSQDSEKALSIFNKALYILPESSKLL 569
                 5677789******************987666 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.9
       TPR_9  43 GclsaAladLeaylalapdapdaeairaq 71 
                  ++  A+ +L++++ ++p  +     +aq
  CCD22731.1 689 KNTIRARSELDTAILKNPTLDILLITKAQ 717
                 45557888888888888877777666666 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.24
       TPR_9   7 reedweralavverllllaPddpeerrdR 35 
                 r e++++a  +v+  l+ +P++p+++ +R
  CCD22731.1 721 RLENYQQAELIVDQGLMKFPKSPGLWVER 749
                 6688999999****************999 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1.8
       TPR_9  28 dpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 d+  +++ G+ l+   +++a l+ +e++++++p 
  CCD22731.1 775 DHAILLEIGMSLYSESQYQASLKWFERAVRKNPR 808
                 566677888888888999**********999995 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.32   3.2e+02      12      24 ..     576     588 ..     575     594 .. 0.85
   2 ?   -1.6   0.0       2.8   2.8e+03       7      25 ..     645     663 ..     643     664 .. 0.86
   3 ?   -3.0   0.1         8     8e+03      10      24 ..     717     731 ..     716     734 .. 0.77
   4 ?    4.6   0.0     0.031        31       5      30 ..     779     804 ..     777     805 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.32
      TPR_10  12 lrqrgrydeAeal 24 
                 l+ +gr+deAe l
  CCD22731.1 576 LCTLGRFDEAEIL 588
                 7889******976 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.8
      TPR_10   7 NLanalrqrgrydeAeall 25 
                  L+ ++ ++++y+ +++++
  CCD22731.1 645 QLGQIYIDTKDYKTSREIY 663
                 69**********9999887 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 8
      TPR_10  10 nalrqrgrydeAeal 24 
                  + +++ +y++Ae +
  CCD22731.1 717 QMESRLENYQQAELI 731
                 56788999****965 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.031
      TPR_10   5 lnNLanalrqrgrydeAealleeala 30 
                 l  +++ l++  +y+++++++e+a++
  CCD22731.1 779 LLEIGMSLYSESQYQASLKWFERAVR 804
                 678999******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 5258.45
//
Query:       CCD22732.1  [L=308]
Description: hypothetical protein NDAI_0A05770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-44  150.6  18.3    6.6e-44  150.1  18.3    1.1  1  Bac_rhodopsin  Bacteriorhodopsin-like protein
  ------ inclusion threshold ------
        3.4    8.0   8.4        2.6    8.4   0.5    2.5  2  DUF1772        Domain of unknown function (DUF1772)
        6.2    6.5   5.5         14    5.3   5.5    1.5  1  Use1           Membrane fusion protein Use1


Domain annotation for each model (and alignments):
>> Bac_rhodopsin  Bacteriorhodopsin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1  18.3   1.1e-47   6.6e-44       1     216 [.      37     260 ..      37     265 .. 0.93

  Alignments for each domain:
  == domain 1  score: 150.1 bits;  conditional E-value: 1.1e-47
                    HHHHHHHHHHHHHHHHHHHHHTTTSSTCCHHHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEETTEE............EEEETHHHHHHHHHHHHH CS
  Bac_rhodopsin   1 wtvfsvfallalvatllfvvtsrrvkdgekrkllvipllitaiaavaYltmalglGltgveaefeh............rqvfyarYidWllttPll 84 
                    w+ f +f+ ++++ +ll +      k+  +r ++ ++l+ t+++++aY+tma++lG+t v+a+ +h            rqvfyarY++W+l+ P  
     CCD22732.1  37 WSAFCIFLFFFIIMVLLMFR-----KPINERLFYYTALAPTGFMMIAYFTMASNLGWTPVKAKYDHvqtstqaehpgmRQVFYARYVGWFLAFPWP 127
                    78999999999998888884.....344579*************************************************************9997 PP

                    HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSTHHH.HHHHHHHHHHHHHHHHHHHHHH CS
  Bac_rhodopsin  85 vlvlaelagadrrtllvlvladvvmivgglvgaliestyrwvyftisvaallvvlylllgelaraakslsser.rslfntLrnlvvvlwilYpvaw 179
                    +   +  ++     +++ v+++++++v +l++al++sty+w+y+ +++aa +v+ + ++++ ++ +k+ +++   ++f+++  ++++lw++Ypva 
     CCD22732.1 128 IIQASIFGKTPLWHIAFNVCFTEFYVVCFLIAALVHSTYKWGYYSFGIAAGIVTSISIMTTTRNLVKNKGNSElMNVFKIFYGIIMFLWLVYPVAF 223
                    77777888888*********************************************************99997789999999999*********** PP

                    HHSTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHCCH CS
  Bac_rhodopsin 180 llgeeGngiqpdveavvygilDlvtkvgfglillaaa 216
                    +++e+Gn++qpd+e+++ygilD++   +++ + + +a
     CCD22732.1 224 GISEGGNVLQPDSEHIFYGILDVLFLCVMPCLFVVFA 260
                    ******************************9888765 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.5   0.00044       2.6      60      95 ..      31      66 ..      26     120 .. 0.79
   2 ?    3.0   2.1     0.019   1.2e+02      25      85 ..     137     191 ..     101     221 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00044
     DUF1772 60 rgarllylaaaallllsivpyTllvmvPtNnkLaal 95
                +g+ +l+ a ++ l++ i+ + l++ +P+N++L+  
  CCD22732.1 31 KGSDWLWSAFCIFLFFFIIMVLLMFRKPINERLFYY 66
                67789998888889988888999999****998755 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.019
     DUF1772  25 lkqwrrlfkrgkavfpplallsalafaylaaraasrgarllylaaaal.lllsivpyTllvm 85 
                  ++w+ +f++    f  + +++ l +a l+   +s+ ++++y  + a+ ++ si ++T + +
  CCD22732.1 137 TPLWHIAFNVC---FTEFYVVCFLIAA-LV---HSTYKWGYYSFGIAAgIVTSISIMTTTRN 191
                 46788888555...5555555555555.33...23344444433333335555555555444 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.5    0.0023        14     219     244 ..      29      54 ..      24      55 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0023
        Use1 219 kskvkcllwlllfvvlvvFismvlfi 244
                 + k + +lw ++++ l+ Fi mvl++
  CCD22732.1  29 TDKGSDWLWSAFCIFLFFFIIMVLLM 54 
                 556677*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1117  (0.0623013); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2161.20
//
Query:       CCD22733.1  [L=198]
Description: hypothetical protein NDAI_0A05780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-12   45.2   0.0    9.9e-12   44.9   0.0    1.1  1  FMN_red       NADPH-dependent FMN reductase
    0.00017   21.3   0.0    0.00023   21.0   0.0    1.2  1  Flavodoxin_2  Flavodoxin-like fold
     0.0048   17.1   0.4      0.025   14.8   0.4    2.1  1  Flavodoxin_1  Flavodoxin
  ------ inclusion threshold ------
      0.035   14.3   0.0       0.73   10.1   0.0    2.1  2  Flavodoxin_5  Flavodoxin domain


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   2.2e-15   9.9e-12      14     144 ..      13     140 ..       2     146 .. 0.84

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 2.2e-15
                 -HHHHHHHHHHCCT-T.T-CEEEEETTTS.--..---HCHGHTCGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCHT-.SSCHCCTT-EE CS
     FMN_red  14 sntrklaewaaealkeagaevelidladlilpcalcdkdlesegqtsddvaellekiaaadaliivtPeYngsysgllKnalDrlsrtrgkkelrgKpv 112
                 + t klae+ ++ +++ag  +++ ++a+   p   ++k l    +++d   +  e++++ da++++ P+ +g+++++ K+++Dr++  + k +l+gK++
  CCD22733.1  13 GHTAKLAEAEKRGVEAAGGSADIYQVAETLTP--EVVKAL-GGAPKPDYPIATAETLTEYDAFLFGIPTRFGNFPAQWKAFWDRTGGLWAKGSLHGKVA 108
                 78999*********999***********9777..455444.446799999************************************************* PP

                 EEEEE-SSTTTTHHHHHHHHHHHHHTT-EEEE CS
     FMN_red 113 alvavgggrrgglraeeqlrqvlaelgaivvp 144
                 ++++  g+  g +++     + la++g i+vp
  CCD22733.1 109 GCFVSTGTGGGNEATIMNSLSTLAHHGIIYVP 140
                 99977777677777777778888889988887 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.1e-08   0.00023      18     137 ..      16     117 ..       5     140 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.1e-08
                   HCHHHHHHHHHCCCTTTEEEEEEHHCCT-----CCCCHCCHHHHTTCHHHHHHHHHHHHCSSEEEEEEE-BTTB--HHHHHHHHHHS-TTTSCEETT CS
  Flavodoxin_2  18 salaqafvealekagphevtvrdLyadflpvlttrdlaaklayeekpadveseqiekllaadaivlqfPlwwfgvPailKgwiDrvltagfafytee 114
                    +la+a  +++e+ag    ++  +++     lt++ ++a   +++ p    + + e l + da +++ P  + ++Pa+ K++ Dr    g       
    CCD22733.1  16 AKLAEAEKRGVEAAG-GSADIYQVAE----TLTPEVVKALGGAPK-PDYPIATA-ETLTEYDAFLFGIPTRFGNFPAQWKAFWDRT--GGLWA---- 99 
                   566666666666666.5555555555....466666666444555.44445555.78****************************5..55522.... PP

                   CSSCCCCTTTTSEEEEEEEESS- CS
  Flavodoxin_2 115 ggegrgggLkgkkalvivttGgp 137
                        +g L+gk a + v+tG  
    CCD22733.1 100 -----KGSLHGKVAGCFVSTGTG 117
                   .....478999999999998765 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.4   5.6e-06     0.025       1     123 [.       6     116 ..       6     134 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.6e-06
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   i+ ++ +G+t klA++ +++++++g +ad++++++      e+     +l +++    + p  ++e+ ++ ++ l+g ++    + +   ++ +++d
    CCD22733.1   6 IIIYTLYGHTAKLAEAEKRGVEAAGGSADIYQVAETLT--PEVV---KALGGAP--KPDYPIATAETLTEYDAFLFGIPT---RFGNFPAQWKAFWD 92 
                   566899*****************999888888777773..3444...4677777..445555566666666666666544...47899999999999 PP

                   TTSSSTTHHHHHHHHHHHHTTCEEES CS
  Flavodoxin_1  98 sayenFcaagkkldekleelGaerll 123
                   +++    +a + l+ k+ + ++++ +
    CCD22733.1  93 RTGGL--WAKGSLHGKVAGCFVSTGT 116
                   99999..9999999998887776654 PP

>> Flavodoxin_5  Flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.029   1.3e+02       3      39 ..       7      42 ..       5      53 .. 0.80
   2 ?   10.1   0.0   0.00016      0.73      37      69 ..      62      94 ..      36     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.029
  Flavodoxin_5  3 lYsSrdGqTkkiaeriaeelreegelvdvedvekese 39
                  +  + +G+T+k ae+ +  ++++g ++d+ +v +e+ 
    CCD22733.1  7 IIYTLYGHTAKLAEAEKRGVEAAGGSADIYQV-AETL 42
                  44589**********99999999999999998.4555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00016
  Flavodoxin_5 37 esedlesydavvigasvyygkllpelakFvekh 69
                   +e l++yda+++g + + g+++ + ++F ++ 
    CCD22733.1 62 TAETLTEYDAFLFGIPTRFGNFPAQWKAFWDRT 94
                  6789***********************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1483.21
//
Query:       CCD22734.1  [L=496]
Description: hypothetical protein NDAI_0A05790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-11   44.8   6.7      0.039   14.8   0.1    5.3  5  WD40         WD domain, G-beta repeat
    1.6e-05   25.1   1.0         27    5.1   0.0    5.5  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.039   14.3   0.1       0.11   12.9   0.1    1.8  1  DUF5503      Family of unknown function (DUF5503)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00055       3.3      14      36 ..      96     118 ..      78     119 .. 0.85
   2 !   14.8   0.1   6.4e-06     0.039       9      38 .]     219     250 ..     214     250 .. 0.69
   3 !    9.0   0.0   0.00047       2.8      18      38 .]     330     350 ..     317     350 .. 0.80
   4 !   11.5   0.3   7.1e-05      0.43       8      38 .]     378     409 ..     371     409 .. 0.84
   5 ?   -3.3   0.0         3   1.8e+04      23      37 ..     447     461 ..     442     462 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00055
                 EEEEEETTSSEEEEEETTSEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvri 36 
                 ++l+ +p g++l+sG  +g++ +
  CCD22734.1  96 NCLDIDPTGQFLLSGNNNGSIIL 118
                 8**************88999866 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 6.4e-06
                 SS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtsla..fspdgawlasGsdDgtvriWd 38 
                  H s+++ ++    ++g  +++Gs+D+ ++iWd
  CCD22734.1 219 SHiSGISTMKwyGEDNGM-FFTGSYDKIIKIWD 250
                 476667777453333333.569**********9 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00047
                 EETTSSEEEEEETTSEEEEEE CS
        WD40  18 fspdgawlasGsdDgtvriWd 38 
                 ++ +g+ ++sG+  g v++Wd
  CCD22734.1 330 NPNNGNIICSGDAEGRVKLWD 350
                 5668888889988*******9 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 7.1e-05
                 ESS.SSEEEEEEETTSSEEEE.EETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlas.GsdDgtvriWd 38 
                 ++H +  t+l+++  g+ l+s G+ Dg ++iWd
  CCD22734.1 378 KAHlQACTDLCWNEVGSKLCSiGT-DGRLYIWD 409
                 6899889***********974367.*******9 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 3
                 SEEEEEETTSEEEEE CS
        WD40  23 awlasGsdDgtvriW 37 
                 +++++ +d+g v+i+
  CCD22734.1 447 DFVICNTDNGEVHIY 461
                 567644789999987 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.058   3.4e+02      43      67 ..      97     121 ..      77     135 .. 0.84
   2 ?    3.3   0.0     0.016        98      39      84 ..     222     266 ..     201     283 .. 0.78
   3 ?   -2.5   0.0       1.1   6.6e+03      41      70 ..     269     298 ..     264     306 .. 0.78
   4 !    5.0   0.0    0.0049        29      48      77 ..     332     362 ..     295     370 .. 0.75
   5 !    5.1   0.0    0.0046        27      35      66 ..     378     409 ..     367     421 .. 0.85
   6 ?    2.8   0.0     0.024   1.5e+02      53      82 ..     449     478 ..     438     488 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.058
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrllda 67 
                  +L   p g++L  + ++g++ l+  
   CCD22734.1  97 CLDIDPTGQFLLSGNNNGSIILFAL 121
                  6788899************998765 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.016
  ANAPC4_WD40  39 sevrsLaWkpdgk.lLavaysdgevrlldaesgkvvhslsvksekav 84 
                  s ++ ++W  +++ ++  +  d  +++ d ++ k v+ l+ +++  +
   CCD22734.1 222 SGISTMKWYGEDNgMFFTGSYDKIIKIWDTNEFKSVQDLPFEHK--I 266
                  55778999876552667788899*************99999877..4 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.1
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesg 70 
                  + +++ +  +++++va +d   rl+d +s 
   CCD22734.1 269 IDNVKNNYMNEVIVVASDDYYPRLIDLKSM 298
                  666666777889999999999999998775 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.0049
  ANAPC4_WD40  48 pdgklLavaysdgevrlldae.sgkvvhsls 77 
                  ++g++++ + ++g+v+l d   + k++ +l+
   CCD22734.1 332 NNGNIICSGDAEGRVKLWDLRmTNKLLYELQ 362
                  479***************9862455555555 PP

  == domain 5  score: 5.1 bits;  conditional E-value: 0.0046
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  +++ +  ++L+W++ g+ L+    dg++ + d
   CCD22734.1 378 KAHLQACTDLCWNEVGSKLCSIGTDGRLYIWD 409
                  56667889******************998876 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.024
  ANAPC4_WD40  53 Lavaysdgevrlldaesgkvvhslsvksek 82 
                      +++gev++++ ++ k+ ++++ +++ 
   CCD22734.1 449 VICNTDNGEVHIYETQQYKLWNKIEHHQSY 478
                  556788999****99999999999988775 PP

>> DUF5503  Family of unknown function (DUF5503)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.8e-05      0.11       5      96 ..     355     453 ..     351     469 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
     DUF5503   5 ndlslktqpvqlnkvtsntestikqhelvsddaiinelsselvsclgngkf...tpisedsklfn...mlsefkllhsey.fewgdyslwfqdfsiynk 96 
                 n l  + q  q n   +n++   k h     d   ne+ s+l s   +g++    p   d  l+n   +l  + ll+  + +   +  +wf+df i n 
  CCD22734.1 355 NKLLYELQREQSNTGNANSKINTKAHLQACTDLCWNEVGSKLCSIGTDGRLyiwDPFLSDKTLINrpqLLGSIDLLRNRFkIRTSQRLIWFNDFVICNT 453
                 5566667778888888888888999*99*********************9533379999****986667999****9988345667788*******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3357.65
//
Query:       CCD22735.1  [L=885]
Description: hypothetical protein NDAI_0A05800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-12   47.1   3.9    3.7e-12   45.8   3.9    1.7  1  DUF1752          Fungal protein of unknown function (DUF1752)
  ------ inclusion threshold ------
        1.8    9.2   8.5      0.053   14.1   1.7    1.9  2  FoP_duplication  C-terminal duplication domain of Friend of P


Domain annotation for each model (and alignments):
>> DUF1752  Fungal protein of unknown function (DUF1752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   3.9   4.1e-16   3.7e-12       1      28 []     151     182 ..     151     182 .. 0.98

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 4.1e-16
     DUF1752   1 lWkyytkkkk....dlpngeRLENlSWRlWnk 28 
                 +Wky+++kkk    dl n++RLEN+SWR+W+k
  CCD22735.1 151 SWKYIILKKKkrdiDLINSARLENASWRTWAK 182
                 8*****************************98 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.7     6e-06     0.053      29      63 ..      48      85 ..      33     101 .. 0.69
   2 ?   -3.5   0.7       1.8   1.6e+04      28      47 ..     236     258 ..     212     263 .. 0.39

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6e-06
  FoP_duplication 29 ggrgrgrggrgg....rkkkkpltkeeLDaeLDaYmgkk 63
                     + r+ gr gr++    +  ++++  e+LD++LD+Y+  +
       CCD22735.1 48 RTRSMGRLGRHSssarKALNRKKIDEQLDEQLDEYYD-D 85
                     3344444444444434556888899**********87.4 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.8
  FoP_duplication  28 rggrgrgrggrgg...rkkkkpl 47 
                      ++g g    ++++   +kk+++ 
       CCD22735.1 236 SRGYGSDDENSKRlsiKKKNTKR 258
                      33333333333333344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1048  (0.0584528); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.41
# Mc/sec: 6420.10
//
Query:       CCD22736.1  [L=917]
Description: hypothetical protein NDAI_0A05810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      5e-06   26.0   7.5    1.4e-05   24.6   7.5    1.7  1  Vps54_N       Vacuolar-sorting protein 54, of GARP complex
     0.0011   19.4   0.3      0.007   16.8   0.3    2.5  1  Vps54         Vps54-like protein
  ------ inclusion threshold ------
       0.03   14.6   0.1       0.13   12.5   0.1    2.1  1  DUF3364       Domain of unknown function (DUF3364)


Domain annotation for each model (and alignments):
>> Vps54_N  Vacuolar-sorting protein 54, of GARP complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   7.5   2.3e-09   1.4e-05      20     157 ..     259     398 ..     236     401 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2.3e-09
     Vps54_N  20 Lkklpdde..lsyesiekevkklksqhdvvskklsqlilekreefvkelseveeiekelkesvvickngrraLdlakkeltrtsLellakskkrqllkk 116
                 L++l  d+  +  +   + +++l++++d v++ l + i +++++f + lsev +ie++ ++++v+  +  ++L+++ ke  +t++e l    kr+   k
  CCD22736.1 259 LNRLTMDDqkVRDDAYIELREQLSNYLDTVENLLVNEISKSSNKFFRALSEVDDIERKANDTIVELDELMKTLNIIDKEKLQTKIENLQLLFKRKNVEK 357
                 555555553344444556789****************************************************************************** PP

     Vps54_N 117 llktltaikelrelekrleelleeedysaAiqllletkqla 157
                 l ++  +ik + +  ++ +el  +++y   ++++  + +l+
  CCD22736.1 358 LEQSILQIKLVLNKTEECKELYRQDEYDSCLNMIKSIDNLI 398
                 ********************************998887776 PP

>> Vps54  Vps54-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   1.2e-06     0.007       2      97 ..     789     880 ..     788     912 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.2e-06
       Vps54   2 ekfvvvesallllkmieeYlelakelpslas.eilsrllelLklfNsrtcqliLgAgAtrsagLktItakhLalasqslslvialipyvkealerhl 97 
                 ++fv ++s l+ + +i+e l l++++ps+   ++ +   ++Lk+fN+ t+  i + g     +  + t k+L++  +sl++++ ++++v+ + +r++
  CCD22736.1 789 KTFVASASLLTAIDIIKELLILSTNIPSTYLpNCEKLCFNILKVFNTATMSSITEQG-----KPLSKTGKNLSIIGESLDCLAEFVNMVQLFYQRYS 880
                 789***********************9765538888889***********9996544.....44445889999999999999999999999998884 PP

>> DUF3364  Domain of unknown function (DUF3364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.2e-05      0.13       7      53 ..     371     418 ..     366     419 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
                 S---HHHHTTSHHHHHHHHHHHH.TT--..--HHHHHHHHHHHTSHHHH CS
     DUF3364   7 kildhseLFrepeYqellenKkeefEea..hsaekvaevaeWTktwEYr 53 
                 k  +++eL+r++eY   l+  k+  ++    ++++   v++WT  w Y+
  CCD22736.1 371 KTEECKELYRQDEYDSCLNMIKS-IDNLikGDDAEDSTVQAWTNNWPYK 418
                 6789*******************.99983356788889********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1275  (0.0711138); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.23s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6588.34
//
Query:       CCD22737.1  [L=591]
Description: hypothetical protein NDAI_0A05820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-20   73.6  11.3    3.9e-11   43.0   0.2    3.9  3  Myb_DNA-binding  Myb-like DNA-binding domain
    9.8e-17   61.0  10.0    3.9e-14   52.6   1.4    3.6  3  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
        6.2    6.1  15.0        4.9    6.4   2.6    2.3  2  CMS1             U3-containing 90S pre-ribosomal complex subu


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.11   6.7e+02      22      41 ..     325     347 ..     286     352 .. 0.67
   2 !   43.0   0.2   6.5e-15   3.9e-11       1      45 [.     358     401 ..     358     402 .. 0.96
   3 !   33.1   2.7   7.9e-12   4.7e-08       2      45 ..     411     502 ..     410     503 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.11
                      C...HHHHHHHHTSS-HHHHHHH CS
  Myb_DNA-binding  22 r...WkkIaerlggRtekqcrsr 41 
                      +   W  I + l+ R++ ++  +
       CCD22737.1 325 KddfWINICKVLPFRSRSSIYKH 347
                      15679999999998888877655 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 6.5e-15
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45 
                      rgkWt+eEd+ L++++ +  + W+ I + l gR +++cr+rwrny
       CCD22737.1 358 RGKWTPEEDQELARLCIQKEGLWSDIGKAL-GRMPEDCRDRWRNY 401
                      89****************9999********.6************9 PP

  == domain 3  score: 33.1 bits;  conditional E-value: 7.9e-12
                      SSSBHHHHHHHHHHHHH........................................HTTC.......HHHHHHHHT.SS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkk........................................hGnr.......WkkIaerlg.gRtekqcrsrwrny 45 
                      +kW++eE+elL  ++++                                        hG         W+ ++er+g +R++ qcr++w ++
       CCD22737.1 411 NKWSKEEEELLKSVIAQiiqeahnyrilrekaaeegvadeslsevspeargpkgkkiHGRPgfkdiinWTVVSERMGgTRSRIQCRYKWSKL 502
                      69**************************************************9999988667889************99**********875 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.29   1.7e+03      19      38 ..     327     351 ..     288     354 .. 0.63
   2 !   52.6   1.4   6.5e-18   3.9e-14       1      60 []     361     421 ..     361     421 .. 0.97
   3 !   12.0   0.2   3.2e-05      0.19      18      46 ..     473     505 ..     463     522 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.29
  Myb_DNA-bind_6  19 d.WknIaealnrRtp....kqcfdr 38 
                     d W nI + l++R+     k++++r
      CCD22737.1 327 DfWINICKVLPFRSRssiyKHVRRR 351
                     2499999999977662255555555 PP

  == domain 2  score: 52.6 bits;  conditional E-value: 6.5e-18
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwkn..kLrpkisrkkwskeedirL 60 
                     Wt+eEd++L++l+ + +  W+ I +al+ R p++c+drw+n  k+ +++  +kwskee+++L
      CCD22737.1 361 WTPEEDQELARLCIQKEGLWSDIGKALG-RMPEDCRDRWRNyiKCGSNRVANKWSKEEEELL 421
                     ****************************.************88889************9987 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 3.2e-05
  Myb_DNA-bind_6  18 n....dWknIaealn.rRtpkqcfdrwknkLrpk 46 
                     +    +W+ ++e ++  R+  qc+++w + L  k
      CCD22737.1 473 FkdiiNWTVVSERMGgTRSRIQCRYKWSK-LARK 505
                     155669********55************9.7433 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.6   0.00082       4.9      14      57 ..      34      77 ..      23      91 .. 0.76
   2 ?    4.9   4.7    0.0023        14      11      43 ..     131     161 ..     112     201 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00082
        CMS1 14 ekgkkkksekkRskkkerkkgklketqDvkaglteavalqdpel 57
                   k+ k+e++R+ kk+++k+k k  +D  a + +++ +q+ + 
  CCD22737.1 34 PDEKRIKKEQRRKHKKHKHKNKSKREDDNAADVDNNIHIQENDE 77
                45677777778888888888888888888888999999988765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0023
        CMS1  11 enkekgkkkksekkRskkkerkkgklketqDvk 43 
                 +n+ + k++k+ k+Rsk+k+ k+++++   D++
  CCD22737.1 131 NNEVERKRSKRSKRRSKDKKAKHNEIAV--DPE 161
                 477788999*9************99943..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1944  (0.108428); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 4044.88
//
Query:       CCD22738.1  [L=156]
Description: hypothetical protein NDAI_0A05830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-31  107.2   0.8    6.9e-31  106.4   0.8    1.4  1  Ribosomal_S17_N  Ribosomal_S17 N-terminal
    3.4e-27   94.3   4.5    3.4e-27   94.3   4.5    1.7  2  Ribosomal_S17    Ribosomal protein S17
  ------ inclusion threshold ------
      0.091   12.6   0.0       0.14   11.9   0.0    1.2  1  DUF922           Bacterial protein of unknown function (DUF92


Domain annotation for each model (and alignments):
>> Ribosomal_S17_N  Ribosomal_S17 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.8   1.2e-34   6.9e-31       1      69 []       8      71 ..       8      71 .. 0.91

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 1.2e-34
                     --SSS----SS--------------....--------TT----GGGGS-----TTSSSSSS----S-EE CS
  Ribosomal_S17_N  1 qterafqkQetvflnkkkskeekkkkkkkkryvknvglgfktPkeAiegtYiDkKCPFtGnvsirGriL 69
                     q+erafqkQ+++f n+k   +++k+   +kr++kn glgfktPk+Aieg+Y+DkKCPFtG vsirG+iL
       CCD22738.1  8 QSERAFQKQPHIFSNPK--FKTSKR---TKRWYKNAGLGFKTPKTAIEGSYVDKKCPFTGLVSIRGKIL 71
                     89***************..333333...38**************************************8 PP

>> Ribosomal_S17  Ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.56   3.3e+03      26      26 ..      20      20 ..       1      35 [. 0.46
   2 !   94.3   4.5   5.7e-31   3.4e-27       1      68 []      73     141 ..      73     141 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.56
                   T CS
  Ribosomal_S17 26 k 26
                    
     CCD22738.1 20 F 20
                   2 PP

  == domain 2  score: 94.3 bits;  conditional E-value: 5.7e-31
                    EEEEE--STTEEEEEEEEEEEETTTTEEEEEEEEEEEE-TTTS.--TT-EEEEEEECECSSSEEEEEEE CS
  Ribosomal_S17   1 GvVvsdkmdkTvvVrverlvkhpkykkyvkrrkkylahdenns.vkvGDiVrieecrPlSktkrfvvve 68 
                    G+Vvs+km++T+v+r+++l++ pky++y+kr+k++ +h ++ + v+vGDiV+ ++crP+Skt+rf+vv+
     CCD22738.1  73 GTVVSTKMHRTIVIRRDYLHYVPKYNRYEKRHKNVPVHVSPAFrVQVGDIVTAGQCRPISKTVRFNVVK 141
                    99*****************************************************************96 PP

>> DUF922  Bacterial protein of unknown function (DUF922)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.4e-05      0.14      79     145 ..      87     153 ..      77     155 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.4e-05
      DUF922  79 rekWdtllaalerHEevHgeiakeaareiekalkslppdpdCeklkeevtkrlqaileehrqaqrdf 145
                 r+ + +++++ +r+E++H+++ +    ++  ++ ++ ++ +C+ + ++v+  + +++ +  +a+++f
  CCD22738.1  87 RRDYLHYVPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTAGQCRPISKTVRFNVVKVSPAAGKANKQF 153
                 66788999******************************************99999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1159.96
//
Query:       CCD22739.1  [L=458]
Description: hypothetical protein NDAI_0A05840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-33  115.3   0.0    5.1e-33  114.5   0.0    1.3  1  tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, 
    3.1e-20   72.4   9.5    3.1e-20   72.4   9.5    1.9  2  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.0   5.7e-37   5.1e-33       1     179 []     232     419 ..     232     419 .. 0.91

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 5.7e-37
                   EEEEETTSEEEEE-SSSHHHHHHHHHHHEE.EB.GGSSEEEEEEEEEEBTTTS....TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.xxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   1 YkledrndreyiLkPtneetfvelirdevl.rs.krLPlklyqiqtkyRdEks....dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisrif 91 
                   Yk+ d  d+e++L++t+e+++ + ++ e+  ++ ++LP++++ +++++R+E+     d  G++Rv+ F++ ++++   ++++++++ ++i+  + ++
    CCD22739.1 232 YKVIDG-DDEKYLIATSEQPISAYHSGEWFeKPqEQLPIRYVGYSSCFRREAGshgkDAWGIFRVHAFEKIEQFCLTEPEKSWEEFDKMINHSEAFY 327
                   677766.79*******************99766688****************66886777************************************* PP

                   HHTT.SCEEEEEEGTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTE..EEECTTS.SEEEEEEEEEEEE.HHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx.xxxxxxxxxxxxx.xxxxxxxxxxxx RF
  tRNA-synt_2b  92 erlglefraiielmsaksadykdkkefeavsesltkgieigtiqklgtrlserlga..tvldenn.reksvimicaaig.veRllsaileqn 179
                   ++l l++r++  + ++ +  +++k+++ea+++ ++ + e+++++++ +++s+ l++   ++++ + ++k v+ ++ +++ +eR l++ile++
    CCD22739.1 328 QSLKLPYRVVGIVSGELNNAAAKKYDLEAWFPYQKEYKELVSCSNCTDYQSRNLEIrcGIKKMGDrEKKYVHCLNSTLAaTERALCCILENY 419
                   ******9988888999999*************************************54456665546778*******777**********96 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   9.5   3.5e-24   3.1e-20       1     108 []       1     112 [.       1     112 [. 0.99
   2 ?   -1.5   0.1      0.32   2.8e+03      80     100 ..     214     234 ..     212     236 .. 0.80

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 3.5e-24
                   ---HHHHHH....-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   1 MLDiklire....npeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkel 93 
                   MLDi+++ e    npe++++++k+R++++++vd++++ ++ + ++++el+el+++ N+l+k Ig + k+ked +el+ e + l +e ++l++++++ 
    CCD22739.1   1 MLDINQFIEekggNPELIRQSQKARNASVELVDDIIADYKDWVKTRFELDELNKKLNKLQKDIGLKFKNKEDPKELLVEKDILTAEKAKLTEREQKD 97 
                   ************************************************************************************************* PP

                   HHHHHHHHCTS---- CS
  Seryl_tRNA_N  94 eaeleklllaiPNip 108
                   +++l++++ +++Ni+
    CCD22739.1  98 DKDLKEKVFQVGNIV 112
                   *************96 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.32
                   HHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  80 keelkaleaelkeleaelekl 100
                   ++e+ a++a+l++ ++el k+
    CCD22739.1 214 NKEVMAKTAQLSQFDEELYKV 234
                   678888999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3328.52
//
Query:       CCD22740.1  [L=176]
Description: hypothetical protein NDAI_0A05850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-61  206.2   9.6      3e-61  206.0   9.6    1.0  1  Atg31     Autophagy-related protein 31


Domain annotation for each model (and alignments):
>> Atg31  Autophagy-related protein 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.0   9.6   1.7e-65     3e-61       2     157 .]       3     176 .]       2     176 .] 0.93

  Alignments for each domain:
  == domain 1  score: 206.0 bits;  conditional E-value: 1.7e-65
       Atg31   2 nltltvydknvkhlleeeekssesksiegatkamfPtnikYiFeddddeeeveeldss.................d.....kkeedeienviivdldes 78 
                 +l++tv+dknv+h+l++e++  +s+s+e++t+amfPt+ikYiFe+d++e+e e++d++                       k+ +deienvii+dl+e+
  CCD22740.1   3 YLNVTVFDKNVVHSLTNEIE--NSSSPECNTNAMFPTKIKYIFEEDEKEQEGEGRDQNieegrtpgsgtkidkaiLgtsvsKSGNDEIENVIIIDLNED 99 
                 789****************8..8999******************************99888877777776665550555669***************** PP

       Atg31  79 gsledvelisdqyelLsykkegeeeskdekkellekdieldvvskFkdlselledlsLddliklyviqneqlqiisdsl 157
                 +++++++lisd+ye+L+y+ke  +eskd+++e++++diel+v+skF+dl+++++d++Ldd+++ly++q+eqlqi+sd++
  CCD22740.1 100 RTIQNISLISDNYEILDYSKE--QESKDSRHEFFSDDIELNVLSKFCDLEPYTKDVPLDDMVNLYRKQTEQLQILSDNI 176
                 ********************9..9*****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1312.86
//
Query:       CCD22741.1  [L=399]
Description: hypothetical protein NDAI_0A05860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-42  145.7   1.8    2.1e-42  144.9   1.8    1.4  1  DEAD           DEAD/DEAH box helicase
    6.3e-34  116.7   1.6    2.8e-32  111.3   0.0    2.8  3  Helicase_C     Helicase conserved C-terminal domain
    2.7e-05   24.2   0.1    4.8e-05   23.4   0.1    1.4  1  ResIII         Type III restriction enzyme, res subunit
     0.0013   18.5   0.1     0.0032   17.2   0.0    1.6  2  AAA_30         AAA domain
     0.0018   18.6   0.3      0.012   15.9   0.2    2.0  2  AAA_19         AAA domain
     0.0019   17.6   1.5      0.004   16.5   0.1    2.0  2  CMS1           U3-containing 90S pre-ribosomal complex subuni
  ------ inclusion threshold ------
      0.017   15.0   0.0      0.042   13.7   0.0    1.6  1  Helicase_RecD  Helicase
      0.018   15.3   1.9      0.084   13.1   1.9    2.0  1  AAA_22         AAA domain
      0.022   14.1   0.0       0.05   12.9   0.0    1.5  1  tRNA-synt_1b   tRNA synthetases class I (W and Y)


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   1.8     1e-45   2.1e-42       2     173 ..      48     213 ..      47     216 .. 0.95

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 1e-45
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vd 99 
                 +iQ++ai  i+ g+dv+++a+ G+GKT+ f i +lqi+    +k++ + li++PtreLa q+ + + ++++y++++ +++igg+  +++l+k++++ ++
  CCD22741.1  48 SIQSRAITRIIAGNDVIAQAQSGTGKTATFTIGMLQIID--SDKKQLQGLILSPTRELAVQINQVVGNLGDYMNVKSMAMIGGKMMKEDLKKINKNsCH 144
                 69************************************5..59999***********************************************7556** PP

                 EEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddllstgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 ++ gtpgr++d+++++ ln++++++lVlDEad+ll++  gf+++i  i+++l       +++ qv+v+SAT+ k++
  CCD22741.1 145 VISGTPGRILDMIKRQLLNVRNIQILVLDEADELLSEilGFKQQIYDIFAKL-------PKSCQVVVVSATMDKNI 213
                 ****************************************************.......57788********9887 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.5     3e+03       9      61 ..      84     137 ..      80     149 .. 0.49
   2 ?    3.5   0.2     0.044        88      33      77 ..     191     235 ..     152     246 .. 0.65
   3 !  111.3   0.0   1.4e-35   2.8e-32       2     111 .]     252     360 ..     251     360 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.5
                 HHHHTTTTSEEEEEESSHH...HHHH.HHHHHHHTTSTEEEEST.TSTHHHHHHHHHH CS
  Helicase_C   9 llkleeeggkilifvntid...rlek.vklllekkgikvavlhg.elpqnereeileq 61 
                 ++++ +++ + li ++t++   ++++ v  l    ++k+ ++ g ++ +++ +    +
  CCD22741.1  84 IIDSDKKQLQGLILSPTRElavQINQvVGNLGDYMNVKSMAMIGgKMMKEDLK----K 137
                 55566777777888888885333322322222222444444333144444433....3 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.044
                 HHH.HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGT CS
  Helicase_C  33 kll.lekkgikvavlhgelpqnereeileqfnkgesdvLiatdvae 77 
                 +++ +  k+ +v+v+ ++   ++ +ei ++f ++ +++L+  d ++
  CCD22741.1 191 DIFaKLPKSCQVVVVSAT-MDKNILEITKKFMNDPVKILVKQDEIS 235
                 333111336777777775.5556699******99******999876 PP

  == domain 3  score: 111.3 bits;  conditional E-value: 1.4e-35
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek..vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvt 98 
                 k+++l++++  +    +++if+nt+++++   +kl   + ++ v+ +hg+++q++r++++++f+ g+s+vLi+tdv +rGid+++v+lVin+dlp+n++
  CCD22741.1 252 KFDTLCDIY-DSLTITQCVIFCNTKKKVDWlsAKL--AQANFAVVSMHGDMKQEDRDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPENME 347
                 667788887.788899************7653333..4779********************************************************** PP

                 HHHHHHTTSSSTT CS
  Helicase_C  99 syiqriGRtgRag 111
                 +yi+riGR gR+g
  CCD22741.1 348 NYIHRIGRSGRFG 360
                 ***********86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   2.4e-08   4.8e-05       6     169 ..      48     209 ..      44     211 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.4e-08
                 HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHH......HHGGGGTGG......GEEEESSS-B- CS
      ResIII   6 eyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtl......eefkkflseayke..igkkvsgdkkk 95 
                 + Q +ai+++++       + ++ ++  GtGKT + +  + ++  + k++ + l+l p+++l  q         ++++++s    +   gk +++d kk
  CCD22741.1  48 SIQSRAITRIIAG------NDVIAQAQSGTGKTATFTIGMLQIIDSDKKQlQGLILSPTRELAVQINqvvgnlGDYMNVKSM---AmiGGKMMKEDLKK 137
                 5677777777744......4689999**********999999999988888************9999555444444444444...34245555566555 PP

                 -.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...TTTHHHHHT-....--SEEEEEESS- CS
      ResIII  96 akekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..kswreilekf....keavllglTATp 169
                 +   ++++++++  t  ++   +     +++ l   ++++++ DEa  l ++   + ++i + f    k++ ++ ++AT+
  CCD22741.1 138 I---NKNSCHVISGTPGRILDMI-----KRQLLNVRNIQILVLDEADELLSEilGFKQQIYDIFaklpKSCQVVVVSATM 209
                 5...9999999999999999999.....77888888888********999965324444655553223558888889997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.6e-06    0.0032       5      97 ..      49     175 ..      46     204 .. 0.70
   2 ?   -2.9   0.0       2.4   4.8e+03     110     127 ..     284     301 ..     276     304 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-06
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKttalkal.reaweaa..ggrviglAptgkaAkvLaeelg..ieastiakllkrlk................. 81 
                  Q++a++++++++d  +++++  GtGKt + +    ++++++  + + ++l+pt + A ++++ +g   + ++++++    +                 
  CCD22741.1  49 IQSRAITRIIAGND--VIAQAQSGTGKTATFTIGmLQIIDSDkkQLQGLILSPTRELAVQINQVVGnlGDYMNVKSMAMIGGkmmkedlkkinknschv 145
                 59***********9..9**********976654325555555134566689***********8777431333333333211133355556666666667 PP

      AAA_30  82 ..............grarlepgtllivDEa 97 
                               +  ++++ ++l+ DEa
  CCD22741.1 146 isgtpgrildmikrQLLNVRNIQILVLDEA 175
                 777777777666664455555578888877 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.4
      AAA_30 110 kaaekagakvilvGDerQ 127
                 k a+++ a v + GD +Q
  CCD22741.1 284 KLAQANFAVVSMHGDMKQ 301
                 344444499999999999 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   6.1e-06     0.012       1     114 [.      50     178 ..      50     209 .. 0.69
   2 ?    0.2   0.0      0.42   8.4e+02      41      90 ..     264     311 ..     252     341 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.1e-06
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal.......ldfddlltealell 91 
                 q +a++  ++ + ++  a  GtGKT + +  +  +++  + +  + l++++t+  a ++++ + + +++ + + ++a+        d+++++++  +++
  CCD22741.1  50 QSRAITrIIAGNDVIAQAQSGTGKTATFTIGMLQIIDSDKKQ-LQGLILSPTRELAVQINQVV-GNLGDYMNVKSMAMiggkmmkEDLKKINKNSCHVI 146
                 67888668888899999**********999998888888664.899**************999.66677777777777555655534444444444444 PP

      AAA_19  92 e..........eaeeekklqeeellivDEfqdv 114
                            + ++  ++++ ++l+ DE+ ++
  CCD22741.1 147 SgtpgrildmiK-RQLLNVRNIQILVLDEADEL 178
                 466666664321.22223333347777887665 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.42
      AAA_19  41 kpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealel 90 
                    ++++ + t++ ++ l+ +la+++ +   +H+   ++ +d+ + +  +
  CCD22741.1 264 TITQCVIFCNTKKKVDWLSAKLAQANFAVVSMHGD--MKQEDRDKVMNDF 311
                 45799999999999999999999888888888876..6666665455444 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1     2e-06     0.004     166     209 ..     131     174 ..     105     197 .. 0.91
   2 ?   -0.5   0.2      0.32   6.3e+02     191     225 ..     228     262 ..     222     284 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2e-06
        CMS1 166 leesvtylkksrigiavGtpgRildLleeeslsvdeLkrivlDa 209
                 ++e+++ ++k+   +  GtpgRild+++ + l+v +++ +vlD 
  CCD22741.1 131 MKEDLKKINKNSCHVISGTPGRILDMIKRQLLNVRNIQILVLDE 174
                 578999999999******************************96 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.32
        CMS1 191 LleeeslsvdeLkrivlDasfvDkknrgildiret 225
                 L++++ +s++ +k+ ++++   D k  ++ di ++
  CCD22741.1 228 LVKQDEISLEGIKQYIVNVDKEDWKFDTLCDIYDS 262
                 779999*****************999999998776 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.1e-05     0.042       3     102 ..      66     178 ..      64     194 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-05
  Helicase_RecD   3 tAdRGRGKSaalGlalaaliaegk..snilvtapskenvktlfeflakglealglke............eekkkkaekaelrvr...kqrieyiap 81 
                    +A+ G+GK+a+  + + ++i ++k   + l+ +p++e + ++ + + +  + +++k+             +k +k++ + +  +   ++ ++ i+ 
     CCD22741.1  66 QAQSGTGKTATFTIGMLQIIDSDKkqLQGLILSPTRELAVQINQVVGNLGDYMNVKSmamiggkmmkedLKKINKNSCHVI--SgtpGRILDMIKR 159
                    6999***************99988667889****************99999999999999998877533222222222233..2454555555555 PP

  Helicase_RecD  82 dellklkeqadllvvDEAAai 102
                    + l  +  + ++lv DEA  +
     CCD22741.1 160 QLLNVR--NIQILVLDEADEL 178
                    555443..579******9766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.9   4.2e-05     0.084      60     126 ..     138     205 ..      63     216 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.2e-05
      AAA_22  60 llralglelkaerlsseellealeqalraravielliiDEaqhlrseealeeLrsllnl.....srkgvqli 126
                 + ++     +   ++  ++l+++ ++l + + i++l++DEa+ l   e+l +  +++++     ++++v ++
  CCD22741.1 138 INKNSC---HVISGTPGRILDMIKRQLLNVRNIQILVLDEADEL-LSEILGFKQQIYDIfaklpKSCQVVVV 205
                 333322...22556889999999999999999***********7.455555555555544444447776665 PP

>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.5e-05      0.05      35     118 ..     284     368 ..     273     382 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
                   TTSEEEEEEEHHHHHTTTTT.-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHHTTH.HHHHHHHHHHTTCBHHHHHHH CS
  tRNA-synt_1b  35 aghevffliaDlhAiigdps.kaeerklrkreevlenaikaqlakgldpekaevvlqsewlehl.elaellrdlgklgslnrmlqf 118
                   +  ++ f ++ +h+ + + + ++ ++++r+   ++  +     a+g+d++++++v++++ +e++ +++  + + g++g+    ++f
    CCD22741.1 284 KLAQANFAVVSMHGDMKQEDrDKVMNDFRTGHSRVLIS-TDVWARGIDVQQVSLVINYDLPENMeNYIHRIGRSGRFGRKGVAINF 368
                   556788999*******9999999999999999999998.8999********************97899999999988876666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2917.23
//
Query:       CCD22742.1  [L=251]
Description: hypothetical protein NDAI_0A05870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-05   24.9   0.4    0.00036   20.3   0.4    2.6  1  PRK       Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.4     2e-08   0.00036     101     190 ..      76     185 ..       8     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2e-08
         PRK 101 p......dkeeliegadvlviEGlhalydervaelldlkiyvdisidlelarklq......RDiaeRGrslea.......vldsil.rrkpdyvnyikp 179
                        d e   e+ +++++ G +aly  ++ e   lk+y+d ++d +l+  ++       D +++  + e+        l+++l   +p+ ++yi+p
  CCD22742.1  76 GkniekaDTERGGEDVKIIILCGSYALYNIKINEISKLKVYLDDDSDQRLINLISmngkktADEQNKAVTAENdkemlskLLHNYLeHLRPEMQKYIEP 174
                 2555555667778999*******************************9998877522211156666666555422211124445555778999999999 PP

         PRK 180 qfseadliiqr 190
                 ++ + dlii+ 
  CCD22742.1 175 TKIHSDLIIPN 185
                 99999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1077  (0.0600703); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1861.08
//
Query:       CCD22743.1  [L=390]
Description: hypothetical protein NDAI_0A05880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-71  239.7   0.0    3.9e-71  239.4   0.0    1.1  1  GCV_T     Aminomethyltransferase folate-binding domain
    7.4e-13   48.2   0.0    1.4e-12   47.3   0.0    1.5  1  GCV_T_C   Glycine cleavage T-protein C-terminal barrel domain
     0.0029   17.8   0.0     0.0084   16.3   0.0    1.8  2  SoxG      Sarcosine oxidase, gamma subunit family


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.4   0.0   6.6e-75   3.9e-71      12     257 .]       1     258 [.       1     258 [. 0.94

  Alignments for each domain:
  == domain 1  score: 239.4 bits;  conditional E-value: 6.6e-75
       GCV_T  12 fvefagwemPvqYasesikaehlavreaaglfDvShmgkievsGpdaaalLqrlltndisklkpgkatytlllnedGgvidDlivarlded..efllvv 108
                 +v+fag++mP+ Y+++s++++h+++r++aglfDvShm + ++ G d  +lL+++++ d+ k++++ + +++lln++Gg++dD+i+++ de+   f++v+
  CCD22743.1   1 MVPFAGYSMPLLYSNQSHIESHNWTRKNAGLFDVSHMLQSKLVGVDCIKLLNKITPTDFGKVPVNYSHLSVLLNKNGGIVDDTIITKGDEQssLFWIVT 99 
                 89***************************************************************************************965589999* PP

       GCV_T 109 naankekdlawlekaaek........kdldvevedvteelallalqGPkarevlskll......gadlselkffsfaevelaggkkvlvsRtgytGedG 193
                 na++ ++d +++ +++++        +++dv+++ ++  +al+alqGPka+++ls ll      +++l+++ f + +++el++++ + v+R+gytGedG
  CCD22743.1 100 NANRIKEDSEFFVQEIHNlkekgkenNGVDVHWQVIHG-RALMALQGPKAKKILSSLLkkldgkDDELKTFYFGERRQLELFNDILINVTRSGYTGEDG 197
                 **999****99888777788888888888888888777.7******************9988755559999999999999999999************* PP

       GCV_T 194 feiyipaeeaeelweaLleagkeegvkpaGlgArdtlRlEaglrlyghdldeettPleaglgwa 257
                 fei++++++aee+ + Ll    +e+ kp+Gl+Ard+lRlEag++lyg++l+e+++P+ea+l+w+
  CCD22743.1 198 FEISVEDKHAEEVARLLL---DNESTKPIGLAARDSLRLEAGMCLYGNELNETINPVEASLKWV 258
                 *****************6...77789*************************************7 PP

>> GCV_T_C  Glycine cleavage T-protein C-terminal barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   2.4e-16   1.4e-12       2      79 ..     287     378 ..     286     379 .. 0.82

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 2.4e-16
     GCV_T_C   2 rlvglelddgapllrggepilrdg.............evvGhvTSgaysptlgk.sialAyvkaelaklgtevevevrgkrvpaevvkkpfy 79 
                   +g++  ++ p +rgg +i+++               ++G+vTSg  sptl+  +++ +yv+++l+k gt + v+vr+k +p+e+vk+pf+
  CCD22743.1 287 VRIGFKYLKKGPAARGGSKIFQQSilstkdeavtnppVQIGEVTSGSASPTLNNiNVGQGYVQNGLHKRGTPLLVQVRNKFYPIEIVKMPFV 378
                 5678888866688899999997444444444555544559************6549***********************************6 PP

>> SoxG  Sarcosine oxidase, gamma subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.67     4e+03      65      95 ..      30      59 ..      22      62 .. 0.77
   2 !   16.3   0.0   1.4e-06    0.0084      68     143 ..     133     216 ..      82     219 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.67
        SoxG 65 svvdlShgrvlisisGakaeavlakltaiDl 95
                 + d+Sh   + ++ G    ++l+k t+ D+
  CCD22743.1 30 GLFDVSHM-LQSKLVGVDCIKLLNKITPTDF 59
                56677775.4567889999999999999998 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.4e-06
        SoxG  68 dlShgrvlisisGakaeavlaklt....aiDlsadaFpvGaaaa.tilgkvevvil...rtgsdafevlvfrsFaeslwkaLld 143
                 ++ hgr l+ ++G+ka+++l++l       D  ++ F  G+ ++  +++++ ++++    tg+d fe+ v    ae + + Lld
  CCD22743.1 133 QVIHGRALMALQGPKAKKILSSLLkkldGKDDELKTFYFGERRQlELFNDILINVTrsgYTGEDGFEISVEDKHAEEVARLLLD 216
                 567**************9987654111168999*******98873689********444489********99999988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2875.34
//
Query:       CCD22744.1  [L=436]
Description: hypothetical protein NDAI_0A05890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-26   90.9   0.1    8.7e-26   90.1   0.1    1.4  1  Acyltransferase  Acyltransferase
    1.9e-13   50.3   0.0    4.3e-13   49.2   0.0    1.6  1  Acyltransf_C     Acyltransferase C-terminus
  ------ inclusion threshold ------
       0.45   10.2   3.6        6.6    6.5   0.2    2.7  2  Cation_ATPase_N  Cation transporter/ATPase, N-terminus


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.1   1.5e-29   8.7e-26      13     135 .]     144     315 ..     117     315 .. 0.85

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 1.5e-29
  Acyltransferase  13 kgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleeg.............. 92 
                      + ++i+++NHq y+D++++w++++ sn+ +n++ii+kk+l+++p+lg +m +++fif++R + + +++ l++ +  ++++              
       CCD22744.1 144 QMNSIIISNHQLYIDWIIIWWMAHISNLSTNFFIILKKSLQNLPILGYGMNNFRFIFMNR-KWKLDQSYLKEQLYQINHNammmtpipngkkne 236
                      5699***********************77*******************************.444455555555555555566677777777788 PP

  Acyltransferase  93 .............kl.vviFPEGtrsre.................gel..lpfkkGlvrlaakak...kgvpivPvais 135
                                    + ++iFPEGt++++                 +++  lp+ +Gl+++++++    + ++++++++s
       CCD22744.1 237 iekkiinkdsdpwGYnLLIFPEGTNLCSngikknlqychminkkpFKNvlLPHITGLKFMIENLNpslTCLYDFTIGYS 315
                      8888999999999888*****************************44446**************999889999999986 PP

>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   7.2e-17   4.3e-13       2      65 ..     337     399 ..     336     407 .. 0.85

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 7.2e-17
  Acyltransf_C   2 lLsG.kpsevhiyvrripleevPed.eeelaeWlhelfeeKDklleeFyktgtFepgkevkiprrk 65 
                   +L+G  p++++iy+r ++++++P +  e+ ++Wl +l++eKD+ll ++y+ g+F++   ++ ++ +
    CCD22744.1 337 FLKGkGPRMIDIYIRSYKINQIPINnVENFQNWLFNLWQEKDALLTKYYQIGSFQD---FNNENTT 399
                   699999*******************77***************************53...3333334 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2    0.0011       6.6      38      68 ..      36      66 ..      33      67 .. 0.81
   2 ?    3.9   0.4    0.0074        44      42      69 .]      85     113 ..      77     113 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0011
  Cation_ATPase_N 38 lkekkkkslwvkllkqftnplvilLlvaalv 68
                      + kk + ++  ll+ f +++ i+L++ +++
       CCD22744.1 36 NEGKKAQFILNSLLQYFLSFICIILFIQGCL 66
                     555777778999**************98765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0074
  Cation_ATPase_N  42 kkkslwvkllkqf.tnplvilLlvaalvs 69 
                      + k+ ++++l+q  ++++++lL +++++s
       CCD22744.1  85 HAKTNLQIVLNQTkRSFIILLLSILSIIS 113
                      677889999***95666666777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3457.08
//
Query:       CCD22745.1  [L=1231]
Description: hypothetical protein NDAI_0A05900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-47  161.9   0.3    6.6e-47  159.9   0.3    2.1  1  IPK             Inositol polyphosphate kinase
  ------ inclusion threshold ------
      0.016   15.6   3.5      0.016   15.6   3.5    2.8  2  CENP-B_dimeris  Centromere protein B dimerisation domain
       0.55    9.5   3.5         14    4.8   0.1    2.4  2  PfkB            pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> IPK  Inositol polyphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.3   1.1e-50   6.6e-47       1     195 [.     954    1146 ..     954    1148 .. 0.97

  Alignments for each domain:
  == domain 1  score: 159.9 bits;  conditional E-value: 1.1e-50
                  EEEEE-TTTT-SSEEEEEEEESSSSS-TTSTCHHHHHHHHHHCCSTHHHHSEEEEEEEEEETTTTEEEEEEHHHHCT-SHH.HHHHHHHHCCCSSSS CS
         IPK    1 ylvLedltagfkkPcvlDvKlGtrtydedaseekrekqqkkskettseslGfrilGmkvykeeedeyltvdkkygrslske.evkealkkFlsngks 96  
                  +++Ledlt++ +kPc lD+K+Gtr+y+ da+++k+ +q++k+ +tts++lG+ri+G+k+++  ++ y+++dk++gr+++   ++ ++l++F+++g+s
  CCD22745.1  954 FILLEDLTRNLSKPCALDLKMGTRQYGVDAKRSKQLSQRAKCLKTTSRKLGVRICGLKIWN--REYYIKRDKYFGRRVKIGwQFARVLARFIYDGVS 1048
                  799********************************************************95..8899****************************** PP

                  CCHHHHHHHCHHHHHHHHHHHHHCSHSEEESSEEEEEEEETT......................SSEEEEEE--TTEEE...............--T CS
         IPK   97 lrkdakaaskllerLqelkqvlesqeslrfyssSLLfvyegdseasekaeekeaeeeeeeeskekkvevklIDFAhvvp...............tes 178 
                  +++  k++++l+++L +l++ +++ + +r+y+sSLL++y+g+                + +sk+  ++v+lIDFA++                 ++ 
  CCD22745.1 1049 TKSIIKQIPNLIKQLDKLNNEISKLKGYRLYGSSLLLMYDGE----------------DIKSKHFLIKVNLIDFAKCISkkdldenlenfkippKSI 1129
                  ******************************************................5668899****************************9999 PP

                  SS--HHHHHHHHHHHHH CS
         IPK  179 ggpDegyllGlksLiki 195 
                  + +D+g+l+G++sL  +
  CCD22745.1 1130 DVEDKGFLRGIRSLKFY 1146
                  *************9765 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.3       1.1   6.8e+03      23      23 ..     371     371 ..     338     396 .. 0.54
   2 ?   15.6   3.5   2.7e-06     0.016      13      38 ..     414     439 ..     404     473 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
  CENP-B_dimeris  23 e 23 
                     +
      CCD22745.1 371 N 371
                     1 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.7e-06
  CENP-B_dimeris  13 esesdeeeeeeeedeededeeddedd 38 
                     + + d+ ee+e +d+edede++ded+
      CCD22745.1 414 NIDFDKYEEDEGDDDEDEDEDEDEDQ 439
                     55777788888888888888877775 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1    0.0024        14      69     106 ..     191     228 ..     185     249 .. 0.88
   2 ?    4.5   0.7    0.0029        17      69     159 ..     506     595 ..     504     611 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0024
                 HHHHHHTTEEETTEEEESSSEEEEEEEEETTTSEEEEE CS
        PfkB  69 leelkkegvdtdyvkidedtrtglalivvdedgertiv 106
                 ++++++++v+ ++ ki+e++r+++++i+ +e+g+r i 
  CCD22745.1 191 KKNIRDHKVNDRSNKINEKARNAVKIIIKEENGNRKID 228
                 6899****************************999885 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0029
                 HHHHHHTTEEETTEEEESSSEEEEEEEEETTTSEEEEEEEEGGGGGHHHHHHH.HHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTT CS
        PfkB  69 leelkkegvdtdyvkidedtrtglalivvdedgertivfnrgaaadltkeele.ededlleeadllyisgllsselpeavleelaeaakngg 159
                 ++++  +++++d +   ++t+   ++ v+++++e++i  n+  +  ++k   e ede++le ++ll+   + +++++  +++e ++  +++ 
  CCD22745.1 506 RQHFYRNNINCDTCT--NNTKFPDYTNVTNNNDENQISSNNDKNKMQKKIVTErEDEPDLEGGALLQHIHSYPTDSSPILFKEKTTKTHHHS 595
                 7888999****9999..7778888889999889********9999999998889************99999999998888877666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1885  (0.105137); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.90u 0.29s 00:00:01.19 Elapsed: 00:00:00.45
# Mc/sec: 8295.09
//
Query:       CCD22746.1  [L=96]
Description: hypothetical protein NDAI_0A05910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-23   80.1   1.0    1.4e-22   79.6   1.0    1.3  1  DASH_Dad1        DASH complex subunit Dad1
  ------ inclusion threshold ------
      0.073   12.7   0.2       0.16   11.6   0.1    1.6  2  2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus


Domain annotation for each model (and alignments):
>> DASH_Dad1  DASH complex subunit Dad1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   1.0   1.6e-26   1.4e-22       1      54 [.      21      74 ..      21      75 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 1.6e-26
   DASH_Dad1  1 yFerqRdrliqeIaesmeevlnnlnaLNRsLEeviavgkeFesVaaLWssFynv 54
                +F++qRd+++qeI+ +m+++ln ln LN+sLE++iavgk FesV++LW++F ++
  CCD22746.1 21 QFIEQRDLILQEINVTMDSILNGLNELNISLESSIAVGKGFESVSELWKTFFDG 74
                5**************************************************876 PP

>> 2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.61   5.5e+03       1       8 [.      38      45 ..      38      46 .. 0.81
   2 ?   11.6   0.1   1.8e-05      0.16      25      39 ..      63      77 ..      62      79 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.61
  2-oxogl_dehyd_N  1 dsfLsgtn 8 
                     ds L+g n
       CCD22746.1 38 DSILNGLN 45
                     79999987 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 1.8e-05
  2-oxogl_dehyd_N 25 SVdesWrayFknled 39
                     SV+e W ++F++le+
       CCD22746.1 63 SVSELWKTFFDGLES 77
                     9************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 722.08
//
Query:       CCD22747.1  [L=220]
Description: hypothetical protein NDAI_0A05920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1813.15
//
Query:       CCD22748.1  [L=370]
Description: hypothetical protein NDAI_0A05930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-31  106.7  17.6    1.7e-18   66.7   4.4    2.4  2  CRCB      CrcB-like protein, Camphor Resistance (CrcB)


Domain annotation for each model (and alignments):
>> CRCB  CrcB-like protein, Camphor Resistance (CrcB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   5.3   3.5e-16   6.2e-12       4      86 ..      30     148 ..      27     157 .. 0.68
   2 !   66.7   4.4   9.6e-23   1.7e-18       5      93 ..     241     354 ..     237     357 .. 0.85

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3.5e-16
                 HHHHHHHHHHHHHH.HHHHBE.....BHHHHHHHHHHHHHHHHHHH.................HHTTTHHHHHS-SHHHHHHHHHHHHHT-HHHHH... CS
        CRCB   4 alggalGallRyllssllnkr.....plgtlavNvlGsfllgllla.................llttGflGglTTfStfvlelvslleegellaal... 77 
                 + + +lG  +R +++ l++ +       ++l+ N++G++++g+l +                 +lttGf+G++T +S+++lel++  ++ ++ +     
  CCD22748.1  30 ITFTILGNYARAGVTALATYQpsyvsSGSVLWSNLTGCIIMGILQEltvapgwfplelqplfvALTTGFCGSFTSYSSMMLELFKHSTNTAMESSSshw 128
                 6899**********7777777887763388*************888666666665555555445*********************55443322222445 PP

                 ...........HHHHHHHHH CS
        CRCB  78 ...........lyvllsvvl 86 
                              +++++++
  CCD22748.1 129 knhaysmlefmSVLFVQLLV 148
                 55533333333344444444 PP

  == domain 2  score: 66.7 bits;  conditional E-value: 9.6e-23
                 HHHHHHHHHHHHH.HHHHBE....BHHHHHHHHHHHHHHHHHHH.........................HHTTTHHHHHS-SHHHHHHHHHHHHHT-HH CS
        CRCB   5 lggalGallRyllssllnkr....plgtlavNvlGsfllgllla.........................llttGflGglTTfStfvlelvslleegell 74 
                 l+g++G++lR++l++++n++    p+gt++ Nv+ ++l+++l++                         +l++Gf+G+l+T+Stf++e ++l     + 
  CCD22748.1 241 LFGIFGSFLRFWLANQYNGKsihfPWGTFIGNVFSTLLIAILTMvqrgklhanaiipivhgknaclivsALINGFCGSLSTISTFINEGYKLS----FE 335
                 89****************99****9****************99977777776666666555555555445*********************96....44 PP

                 HHHHHHHHHHHHHHHHHHH CS
        CRCB  75 aallyvllsvvlgllavvl 93 
                  +++y+++s++++++++v+
  CCD22748.1 336 DTMIYYFISIFVSYCCIVI 354
                 569***********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 3002.91
//
Query:       CCD22749.1  [L=398]
Description: hypothetical protein NDAI_0A05940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-29  103.8   5.1    1.9e-29  103.0   5.1    1.4  1  Wap1      Wap1 domain
     0.0068   16.7   0.4      0.019   15.2   0.4    1.7  1  Nab2      Nuclear abundant poly(A) RNA-bind protein 2 (Nab2)


Domain annotation for each model (and alignments):
>> Wap1  Wap1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   5.1   2.1e-33   1.9e-29       3     154 ..     239     394 ..     237     398 .] 0.89

  Alignments for each domain:
  == domain 1  score: 103.0 bits;  conditional E-value: 2.1e-33
                 -HHHH--SHHHHHHHHHHHHHHHSTTTSSSHH...HHHHHHHHHHHHH-HHHHHHHHHHTHHHHHHHHTSS.....--TT-HHHHHHHHHHHHHS---T CS
        Wap1   3 nhyneLknmGetlkYqdDLeflledsssklskekfiskLLnlaLalnndedfleYvqkykakeiwewcfqk.....kelddpvlilLqgfllsklplkq 96 
                  h+neLknmG +lkY+dDL+fl  ++     + ++is L+n++++l++dedf + v++     i +wcf+      +    +++ lLqg+l+++l +  
  CCD22749.1 239 THFNELKNMGTSLKYRDDLDFLQRKEMG---TIEYISALVNFCITLHTDEDFKKIVMELDIDTIRDWCFESypeglQSSTLEIIYLLQGYLITTLGVLG 334
                 6*********************987766...567***********************************9733222346678999**********9887 PP

                 T-GGGGG.-TTTTHHHHHT-----SS-..-S-HHHHHHHHHHHTTSS-SSHHHHHHHHHH CS
        Wap1  97 ddkalpk.sleefiieLskqeklpkksk.kgsKlvkLnYkDFlkktenktgleyalkLwe 154
                 +++++++ +l++++  L k + lp  s  +  K+ kL  +DF+++t+ +tg +y+l  ++
  CCD22749.1 335 KEEETNNqQLQNLLNGLPKLKALPDLSIlNKHKMLKLQLNDFIQFTDGTTGYDYSLRTMK 394
                 777777669****************999899*************************8766 PP

>> Nab2  Nuclear abundant poly(A) RNA-bind protein 2 (Nab2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.4   2.1e-06     0.019      21      62 ..     137     178 ..     133     186 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.1e-06
        Nab2  21 lenfnedvnyvaeyivlllsnGgtvesvvqelstlfdsvske 62 
                 ++   e++n v eyi  l  +G+ ve+ v+e   +fd+ +ke
  CCD22749.1 137 INGIYENINDVNEYINSLNDDGSLVEKFVKEHLMVFDTNAKE 178
                 667789*******************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1127  (0.0628591); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3146.20
//
Query:       CCD22750.1  [L=209]
Description: hypothetical protein NDAI_0A05950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-09   36.5   2.2    9.2e-09   35.7   2.2    1.4  1  Sld5      GINS complex protein
  ------ inclusion threshold ------
      0.029   15.0   3.2       0.07   13.8   3.2    1.6  1  AKNA      AT-hook-containing transcription factor


Domain annotation for each model (and alignments):
>> Sld5  GINS complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   2.2     1e-12   9.2e-09       2     109 .]      27     129 ..      26     129 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 1e-12
                 EEEHHHHHHHHHTTSCCCHHCHHH...CHHHHHHCCCHHTTSSSSTTTTTTHHHHHHHHHHHHT.HCHHHHHHHHHHHHHHHHHHHTHCHHHHHHHTS- CS
        Sld5   2 eLPlWlaelLkrqrrveieppewl...spesleailedetkssdlpslpphflelavkllelardldelkrllrdllevRlakirkfaenledaagggg 97 
                 +LP++  +l++ +   e+ + +      +++ e+++++e ++  l + +   ++ +v+ll+++r+    kr+l++++++R + ++++a+++ +++    
  CCD22750.1  27 QLPMYHEDLIR-NIIKEVTQLKKNtdfLKDQQEQLQNQEGNDNGL-DENVLKCQYFVTLLCMERN----KRCLLAYQKLRCDMLDSLAWSNSNSS--IM 117
                 89999999995.444444333332222566666666776666333.7888899999*********....**************************..77 PP

                 TCCHCCS-HHHH CS
        Sld5  98 gellsglseeEk 109
                 ++  + ls++E+
  CCD22750.1 118 ELESNDLSHQEQ 129
                 888888999996 PP

>> AKNA  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.2   7.8e-06      0.07      16      68 ..      11      63 ..       5      67 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.8e-06
        AKNA 16 lkglrsetlaqklssskgqpgkfdpsreleaeIyqlgqrleeLkdqtdqlkqk 68
                l++ r ++l+ k + ++    + d  r++ +e+ ql++  + Lkdq +ql+++
  CCD22750.1 11 LEAKRTQQLNHKQKHAQLPMYHEDLIRNIIKEVTQLKKNTDFLKDQQEQLQNQ 63
                7888888888888888888888899**************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1586  (0.08846); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1612.62
//
Query:       CCD22751.1  [L=369]
Description: hypothetical protein NDAI_0A05960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-13   48.8   0.1    4.8e-12   46.4   0.0    2.3  2  Methyltransf_25  Methyltransferase domain
    3.3e-12   46.4   0.1    8.9e-12   45.0   0.1    1.7  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
    4.1e-10   39.7   0.1    1.2e-09   38.2   0.1    1.8  2  Methyltransf_31  Methyltransferase domain
      3e-09   37.4   0.0    1.3e-08   35.4   0.0    2.0  2  Methyltransf_11  Methyltransferase domain
    3.5e-08   33.5   0.0    2.3e-07   30.8   0.0    2.2  1  Methyltransf_23  Methyltransferase domain
    2.7e-07   30.1   0.0    3.8e-07   29.7   0.0    1.3  1  CMAS             Mycolic acid cyclopropane synthetase
    2.1e-06   26.9   0.0    2.9e-06   26.5   0.0    1.2  1  Methyltransf_9   Protein of unknown function (DUF1698)
    5.5e-05   22.8   0.1    9.3e-05   22.0   0.1    1.4  1  MTS              Methyltransferase small domain
    6.2e-05   23.7   0.2    0.00022   21.9   0.0    2.1  2  Methyltransf_12  Methyltransferase domain
     0.0001   22.4   0.0     0.0018   18.4   0.0    2.1  2  FtsJ             FtsJ-like methyltransferase
    0.00035   20.5   0.0    0.00068   19.6   0.0    1.4  1  Methyltransf_18  Methyltransferase domain
     0.0014   18.4   0.0      0.002   17.9   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0031   17.2   0.1     0.0054   16.5   0.1    1.4  1  Methyltransf_16  Lysine methyltransferase
     0.0034   17.3   0.1     0.0057   16.5   0.1    1.3  1  PRMT5            PRMT5 arginine-N-methyltransferase
     0.0073   15.7   0.1      0.012   15.0   0.1    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
  ------ inclusion threshold ------
      0.015   14.7   0.1      0.032   13.7   0.1    1.6  1  TehB             Tellurite resistance protein TehB
      0.042   13.8   0.0      0.075   13.0   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
      0.043   13.6   0.1      0.071   12.8   0.1    1.3  1  Met_10           Met-10+ like-protein
       0.15   11.5   0.1       0.36   10.3   0.1    1.6  1  Methyltransf_4   Putative methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.0   5.1e-15   4.8e-12       1      75 [.      83     158 ..      83     180 .. 0.84
   2 ?   -0.9   0.0       2.9   2.7e+03      60      73 ..     267     280 ..     198     290 .. 0.59

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 5.1e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEEST.GG CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssga.lh 75 
                      vLd+GcGtG l++ +ak  g+++v+gvD+s + +++are ++ +g+  ++++++g++ed++++ +++D+++s  + + 
       CCD22751.1  83 VLDVGCGTGILSMFAAKY-GAKHVIGVDMS-DVIDNAREIVNLNGFgnKITLLKGKLEDVELPYDKVDIIISEWMgYF 158
                      9**************999.69********9.578*******9999999************************433333 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.9
                      SSTTTEEEEEEEST CS
  Methyltransf_25  60 fedgsfDlvvssga 73 
                        ++++D++vs++ 
       CCD22751.1 267 KRNDRIDAIVSWFD 280
                      24456666666655 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.1   9.4e-15   8.9e-12     160     233 ..      78     153 ..      70     182 .. 0.84
   2 ?   -2.3   0.0       2.4   2.3e+03       9      37 ..     231     259 ..     228     279 .. 0.72

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 9.4e-15
        PrmA 160 kegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk....eekadvivaN 233
                  +g+ vlDvG+G+GiL++ aak gak+v++vD+ +v ++ a+e ++lN+  +k+++ l+++l +      k+d+i++ 
  CCD22751.1  78 FKGKIVLDVGCGTGILSMFAAKYGAKHVIGVDMSDV-IDNAREIVNLNGFGNKITL-LKGKLEDvelpYDKVDIIISE 153
                 57899*****************************98.9**************9976.433333233456899*99975 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.4
        PrmA   9 tkkeaeeavsniLeelgakgvaiedskll 37 
                 ++++ ++++s++L+el+ ++v i+d + +
  CCD22751.1 231 VERDVVNTTSDRLIELDLHTVQISDLSFI 259
                 56777888899999999999999887733 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   1.3e-12   1.2e-09       3      82 ..      79     157 ..      77     211 .. 0.80
   2 ?   -1.9   0.0       2.8   2.6e+03      25      39 ..     204     218 ..     192     219 .. 0.76

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.3e-12
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsn...e 82 
                      kg+ vlD+GCGtG l+  +a + +  ++v+G+D+s ++i  Are+   +g+   +++ +g  e+ e  l  +k+D+i+s     
       CCD22751.1  79 KGKIVLDVGCGTGILSMFAA-K-YGAKHVIGVDMS-DVIDNAREIVNLNGFGnKITLLKGKLEDVE--LPYDKVDIIISEwmgY 157
                      7888****************.4.44699******9.68**************88**********99..77899*****975541 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.8
  Methyltransf_31  25 lgpkaevvGiDisee 39 
                       ++ ++v+G+D+s++
       CCD22751.1 204 TRFWKDVYGFDYSPF 218
                      5555789*****985 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.3e-11   1.3e-08       1      80 [.      84     168 ..      84     183 .. 0.79
   2 ?   -1.5   0.0       4.4   4.1e+03      19      28 ..     208     217 ..     196     258 .. 0.70

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.3e-11
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC-...CCHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhv...edpeka 80 
                      LdvGcGtG+l+   ak+g ++v+gvD+s+ +++ a+e ++ +g+  k++++++ +e++ ++ +++D+++s ++  ++     ++ +
       CCD22751.1  84 LDVGCGTGILSMFAAKYGaKHVIGVDMSD-VIDNAREIVNLNGFgnKITLLKGKLEDVELPYDKVDIIISEWMGYFLlfeSMLDTV 168
                      8*************************765.56788888888888888***********************9965554443445555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.4
                      SEEEEEES-H CS
  Methyltransf_11  19 arvvgvDlsk 28 
                      ++v+g+D+s+
       CCD22751.1 208 KDVYGFDYSP 217
                      7888888886 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.4e-10   2.3e-07       9      62 ..      58     135 ..      48     283 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 2.4e-10
  Methyltransf_23   9 lsdklerll......pk..lraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae...............k 62 
                      l+d +  l+      ++  l++g+ vLd+GcGtGil+  ++++g+ +v+gvD+s++  + +e               +
       CCD22751.1  58 LQDSIRTLAyknaiiDNkhLFKGKIVLDVGCGTGILSMFAAKYGAkHVIGVDMSDVIDNAREivnlngfgnkitllkG 135
                      55555555543333322458999*********************989*******986665546666666654444440 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0     4e-10   3.8e-07      52     132 ..      69     148 ..      43     203 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 4e-10
                 HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--.EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEE CS
        CMAS  52 dlileklelkpGmtlLdiGcGWGslvrraverydv.kvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvv 132
                 + i++  +l +G+ +Ld+GcG G l + a++ y++ +v+g+ +S+     a++ v+  ++ +k +++  + ed++ ++d+v 
  CCD22751.1  69 NAIIDNKHLFKGKIVLDVGCGTGILSMFAAK-YGAkHVIGVDMSD-VIDNAREIVNLNGFGNKITLLKGKLEDVELPYDKVD 148
                 56788999***************99999876.56637******97.57889*************************999974 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   3.1e-09   2.9e-06     109     218 ..      75     184 ..       5     220 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3.1e-09
                     GGS.--TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T.---EEEEEE..ES-GGG-S-HHH CS
  Methyltransf_9 109 phlsdlkgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpe.leafdtvfs..mGvlyhrrsPld 200
                     +hl  +kg+ +ldvGcg+G   +  +  gak v+G+d s +       + +l g  ++ +ll   +e+++   +  d++ s  mG +   +s ld
      CCD22751.1  75 KHL--FKGKIVLDVGCGTGILSMFAAKYGAKHVIGVDMSDVIDNAR-EIVNLNGFGNKITLLKGKLEDVELpYDKVDIIISewMGYFLLFESMLD 166
                     566..8*************999889999*********999876655.566899****************9889******98789999999***** PP

                     HHHHHHCTEEEEEEEEEE CS
  Methyltransf_9 201 hllqlkdqlvkgGelvle 218
                     ++l  +d+   +G l++ 
      CCD22751.1 167 TVLYARDKYLVEGGLIFP 184
                     *******99989988874 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   9.9e-08   9.3e-05      31     103 ..      79     152 ..      51     153 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 9.9e-08
                 TCSEEEEET-TTSHHHHHHHHHTTC.E..EEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTSTTS-EEEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeae..vtlvdvdarAlesakenleankle.vevvasdvleeveekkfdlivs 103
                 + + vlD+GcG+G+l++ +ak   ++   v++ dv  +A e+ + n   nk+  ++   +dv      +k+d+i+s
  CCD22751.1  79 KGKIVLDVGCGTGILSMFAAKYGAKHVigVDMSDVIDNAREIVNLNGFGNKITlLKGKLEDVELPY--DKVDIIIS 152
                 34559***************9887755468888888888888888887777766666666654444..48888876 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       7.8   7.4e+03      51      68 ..      22      49 ..       7      62 .. 0.47
   2 !   21.9   0.0   2.4e-07   0.00022       1      97 [.      84     180 ..      84     182 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7.8
  Methyltransf_12 51 velealdlldldgg..........ssfD 68
                     v+l+++  + ++++          +s+D
       CCD22751.1 22 VTLDNTPESATEKRtlnrfekeyfESYD 49
                     3333222222222222333334445555 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 2.4e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvv...asnvlhhlkdirevldnir 90 
                      L++GcGtG l++  +++   ++++gvD s     +a+e  + ++  + n+++l +  l+d + + +++D+++   +  +l     ++ vl    
       CCD22751.1  84 LDVGCGTGILSMFAAKY-GAKHVIGVDMSDVID-NAREIVNLNG--FGNKITLLKGKLEDVELPyDKVDIIIsewMGYFLLFESMLDTVLYARD 173
                      8*******999999988.888999*****9877.6666666555..566888888888888887889998884333333333255555555556 PP

  Methyltransf_12  91 klLkpgG 97 
                      k L+ gG
       CCD22751.1 174 KYLVEGG 180
                      7777776 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   1.9e-06    0.0018       6      58 ..      66     118 ..      64     170 .. 0.78
   2 ?    1.8   0.0      0.24   2.2e+02      47      95 ..     208     256 ..     193     288 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.9e-06
                 HHHHHHHHHHHT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS....H CS
        FtsJ   6 ayKLleidekfklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm....a 58 
                 ayK + id+k+  f +gk v+D+g+++G  s ++++  ga ++v++vD+  +    +
  CCD22751.1  66 AYKNAIIDNKHL-F-KGKIVLDVGCGTGILSMFAAKY-GA-KHVIGVDMSDVidnaR 118
                 677777888875.8.899*******************.88.99*****988754331 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.24
                 SEEEEEESSSSHHH....TTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE-- CS
        FtsJ  47 gkvvavDlqpmapl....pgvttiqgditdpetiekikealserkvdlvvsDg 95 
                 + v+++D  p  pl    p v t++ d+ + +  ++i+  l      + +sD+
  CCD22751.1 208 KDVYGFDYSPFIPLimkdPIVDTVERDVVNTTSDRLIELDL----HTVQISDL 256
                 6799******977778889*********9999999888544....33334444 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   7.2e-07   0.00068      14      95 ..      79     159 ..      72     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.2e-07
  Methyltransf_18  14 kgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklk.eee.vdtvviaGmGgel 95 
                      kg++v+D+G+  g+l+++++k   ak+vi +D++   +++a+e ++ +g+ +ki++  ++ le ++ + + vd+++   mG  l
       CCD22751.1  79 KGKIVLDVGCGTGILSMFAAKY-GAKHVIGVDMS-DVIDNAREIVNLNGFGNKITLLKGK-LEDVElPYDkVDIIISEWMGYFL 159
                      6899**************9965.578******97.589****************997776.77777666669999888888765 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.1e-06     0.002      31     120 ..      38     123 ..      14     147 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.1e-06
                 GGGSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHH CS
        PCMT  31 eefvpesfkekaYedaplsigynatiSaphmvalalellelkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkk 120
                 ++f +e f+++ + ++ +++ +++         ++++  +l kg+ vL+vG+G+G+l+   a+  g+k  v++++ + +++++a++ ++ 
  CCD22751.1  38 NRFEKEYFESYDHYEIHQEMLQDSI-RTLAYKNAIIDNKHLFKGKIVLDVGCGTGILSMFAAK-YGAKH-VIGVDMS-DVIDNAREIVNL 123
                 5678888888888888887766654.44445555677788****************9876665.56666.89*9965.566677766655 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   5.7e-06    0.0054      40     102 ..      73     132 ..      49     171 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 5.7e-06
  Methyltransf_16  40 lganelsklsvlELGsGtGlvGlavaellpeakviltDleellellkknielnknalkskvkv 102
                      ++++ ++++ vl++G GtG+  + +a+  +  +vi  D+++++++ ++ ++ln+    +k++ 
       CCD22751.1  73 DNKHLFKGKIVLDVGCGTGILSMFAAKY-GAKHVIGVDMSDVIDNAREIVNLNG--FGNKITL 132
                      4567789999***********9988887.8999999****************66..8888765 PP

>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   6.1e-06    0.0057      28     149 ..      35     158 ..      22     172 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.1e-06
                 HHHHHHCC-CC.HHHHHHHHHHHHHHHHCTCCGTCC.........-EEEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEEEES-HHHHHHHHHHHHHHT CS
       PRMT5  28 atYevFEkdkv.KYelYeeAiekalsdlkkekkkks........ekklvilvvGaGRGplvdralkaleetkvtkvkivavEKnpnavvtLqkkvneek 117
                  t + FEk+ +  Y+ Ye   +++l+d  ++   k+         k  ++l vG G G l   a k  +++    v++  v  n + +v L+       
  CCD22751.1  35 RTLNRFEKEYFeSYDHYEI-HQEMLQDSIRTLAYKNaiidnkhlFKGKIVLDVGCGTGILSMFAAKYGAKHV-IGVDMSDVIDNAREIVNLN------G 125
                 5666777766523666653.344455544444444445555555566788899*****99877777666665.7899999999999998884......5 PP

                 TCCGCEEEES-CCCCCHCC.-ECEEEE---BTT CS
       PRMT5 118 Weekveviksdmrelkaee.kvdllvsELLGSf 149
                 +++k++++k  + +++ +  kvd+++sE +G f
  CCD22751.1 126 FGNKITLLKGKLEDVELPYdKVDIIISEWMGYF 158
                 699*************9988***********88 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.3e-05     0.012      18     120 ..      49     150 ..      32     200 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
                      HHHHHHHHHHHTTTHHH.HHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT CS
  Ubie_methyltran  18 skyDlmndvlslgihrl.WkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaee 109
                      ++y+   ++l   i  l +k+ +++ +   +g+ vlDv +Gtg l++  + + g+k +v+++D+++ +++ +++ ++ +g+  +i +l+++ e+
       CCD22751.1  49 DHYEIHQEMLQDSIRTLaYKNAIIDNKHLFKGKIVLDVGCGTGILSMF-AAKYGAK-HVIGVDMSD-VIDNAREIVNLNGFGnKITLLKGKLED 139
                      56666667776666665367799999999**************88764.4444544.7999**985.78999999999999879*******999 PP

                      -TTS-T-EEEE CS
  Ubie_methyltran 110 LpfeddsfDvv 120
                      ++   d  D++
       CCD22751.1 140 VELPYDKVDII 150
                      99999999987 PP

>> TehB  Tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   3.3e-05     0.032      15     108 ..      64     159 ..      42     182 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.3e-05
                 -----HHHHHHCCCS-S-EEEEES-TTSHHHHHHHHTT-E.EEEEES-HHHHHHHHHHHHHTT-TT.EEEEE--GGG----.S-EEEEEEESSGGGS CS
        TehB  15 ltathsevveavkivkpgkvldlgcgqgrnslylsllgyd.vtawdknensiafleeikekenlkn.istalydineakld.erydfilstvvlmfl 108
                 + a ++ +++  ++ k   vld+gcg g  s++ +  g + v  +d  ++ i + +ei + + + n i+    ++++++l  ++ d+i+s  +  fl
  CCD22751.1  64 TLAYKNAIIDNKHLFKGKIVLDVGCGTGILSMFAAKYGAKhVIGVDM-SDVIDNAREIVNLNGFGNkITLLKGKLEDVELPyDKVDIIISEWMGYFL 159
                 55566678888888888899*************99887542555554.3456666666555554331333334455555532456777776555554 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   7.9e-05     0.075      25      70 ..      79     120 ..      52     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.9e-05
  Methyltransf_32  25 galtvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekr 70 
                      + + v+DvG+G g Ls   a        +v+g+d+++ ++++a+++
       CCD22751.1  79 KGKIVLDVGCGTGILSMFAAK---YGAKHVIGVDMSD-VIDNAREI 120
                      456799**********99998...56889*****975.55666555 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   7.5e-05     0.071      99     176 ..      78     157 ..      62     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.5e-05
                 -TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---.TT-EEEEE...E-- CS
      Met_10  99 eegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir.eqladrvv...mnl 176
                  +g++V+dv  G G +++ +aky+ +  v+++d+  + +   +e ++lN   ++++ +++  ++v    +++d ++   m++
  CCD22751.1  78 FKGKIVLDVGCGTGILSMFAAKYGAK-HVIGVDMS-DVIDNAREIVNLNGFGNKITLLKGKLEDVELpYDKVDIIIsewMGY 157
                 5799******************9865.5******7.678999999******9999999999999976566667666333444 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00038      0.36       3      52 ..      81     128 ..      79     138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00038
                     EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSS CS
  Methyltransf_4   3 pvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkN 52 
                     ++vl++GcG G +l+  A k   k ++G++++ +v++++ + ++ +++ N
      CCD22751.1  81 KIVLDVGCGTG-ILSMFAAKYGAKHVIGVDMS-DVIDNAREIVNLNGFGN 128
                     799*******9.56778999999*******85.68888877777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2677.66
//
Query:       CCD22752.1  [L=362]
Description: hypothetical protein NDAI_0A05970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-44  150.4   1.6      1e-43  149.3   1.6    1.6  1  Ribosomal_L4     Ribosomal protein L4/L1 family
    3.2e-29  100.8   4.2    6.4e-29   99.8   0.7    2.6  3  Ribos_L4_asso_C  60S ribosomal protein L4 C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   1.6   1.1e-47     1e-43       2     191 ..      21     260 ..      20     261 .. 0.94

  Alignments for each domain:
  == domain 1  score: 149.3 bits;  conditional E-value: 1.1e-47
                   EE-HHHHSS---HHHHHHHHHHHHHSS-EE-----.-TTTSS---S-SS-SSSSSS---S-TT............STTSTT---SS---S.EEHHHH CS
  Ribosomal_L4   2 eLspkvFaapirrdlihravvaylanrrqgtastk.arsevsgsgrklwkQKGtGrARvgsir............spiargGgvahgpkperdystk 85 
                   +L p+vF+apir+d++h ++++ ++n+rq +a +  a++++s+  +++++  G++ AR++++              +++rgG+++ ++k++r+++ k
    CCD22752.1  21 PL-PAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEkAGHQTSA--ESWGT--GRAVARIPRVGgggtarsgqaafGNMCRGGRMFAPTKVWRKWNVK 112
                   67.9****************************9888*******..6****..********************************************* PP

                   HHHHHHHHHHHHHHHHHHHTT-EEEES.---.-S............S--HHHHHHHHHHTT-..........................TTSSEEEEE CS
  Ribosomal_L4  86 lnkKvrrlAlrsaLsakakqglllvvd.nleple............esktkelvellkklgl..........................ksksvLivv 143
                   +n+ ++r+A +sa++a a ++l+l+++  +e+++            ++ktke+v++lk++g+                          +++++L+v+
    CCD22752.1 113 VNQNEKRYATASAIAASAVASLVLARGhRVEKIPeiplvvssdlesIQKTKEAVAALKAVGAgsdllkvlkskklragkgkyrnrrftQRRGPLVVY 209
                   ***************************73344445667799999999************99999999999999999999999999999999****** PP

                   SSSSCHHHHHHTT-TTEEEEESTT--CHHHHHSSE....EEEEHHHHHHHHH CS
  Ribosomal_L4 144 sekdenlvlaarnlpgvevieveslnvydllkadk....vvitksaveklee 191
                    + d+++v+a rn+pgve+++v+sln+++l+++++    v++t++a+ kl++
    CCD22752.1 210 AQ-DNGIVKALRNVPGVETTNVTSLNLLQLAPGAHlgrfVIWTEAAFAKLDQ 260
                   86.99********************************************975 PP

>> Ribos_L4_asso_C  60S ribosomal protein L4 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.16   1.4e+03       9      32 ..     150     173 ..     146     189 .. 0.65
   2 ?    0.9   0.0     0.055   4.9e+02      13      46 ..     176     206 ..     170     210 .. 0.75
   3 !   99.8   0.7   7.1e-33   6.4e-29       2      75 ..     273     347 ..     272     348 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.16
  Ribos_L4_asso_C   9 kmtnaDlsRiinSdeiqsvlrpak 32 
                      ++  +Dl+ i + +e  ++l++  
       CCD22752.1 150 LVVSSDLESIQKTKEAVAALKAVG 173
                      567778888878777777777764 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.055
  Ribos_L4_asso_C  13 aDlsRiinSdeiqsvlrpakkekkkkr.vqkkNPL 46 
                      +Dl ++++S+     lr+ k++ +++r +q++ PL
       CCD22752.1 176 SDLLKVLKSK----KLRAGKGKYRNRRfTQRRGPL 206
                      6777777775....578888877777789998888 PP

  == domain 3  score: 99.8 bits;  conditional E-value: 7.1e-33
  Ribos_L4_asso_C   2 gynLPrpkmtnaDlsRiinSdeiqsvlrpakkekkkkr..vqkkNPLknkqvmlrLNPyakvlrraallaqkkrkk 75 
                      gy+LP+++++++D+++iinS+eiq+++rpa +++++kr  vqkkNPLknkqv+lr+NPyakv+++++l+++k +k+
       CCD22752.1 273 GYTLPSHIISQTDVTKIINSSEIQTAVRPA-GQATQKRthVQKKNPLKNKQVLLRMNPYAKVFAAEKLGSKKVEKT 347
                      8*****************************.556666669******************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2762.40
//
Query:       CCD22753.1  [L=573]
Description: hypothetical protein NDAI_0A05980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-14   55.1   1.8    1.3e-08   35.4   0.0    3.4  3  SET             SET domain
  ------ inclusion threshold ------
       0.11   12.9   0.1       0.53   10.8   0.0    2.1  2  Phage_lysozyme  Phage lysozyme
       0.14   12.7   0.3       0.14   12.7   0.3    2.2  3  MPP6            M-phase phosphoprotein 6


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   2.2e-12   1.3e-08       1     142 [.      59     258 ..      59     286 .. 0.71
   2 !   15.1   0.0   3.7e-06     0.022     146     169 .]     344     367 ..     290     367 .. 0.92
   3 ?    2.2   0.3     0.036   2.1e+02      56      95 ..     429     471 ..     386     546 .. 0.57

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 2.2e-12
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH.............................HTEEEEEXGGXX..........GGSX...HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxx..........xxxx...xxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele.............................aylfslpeapkn..........laft...kelak 57 
                 G G++At+dI +g+ i+++p+++i++  +++   l                              +yl+++p +  n          +++t   k+l k
  CCD22753.1  59 GLGIIATQDIGEGTKIISIPKSAIFSASNSNIANLLqdeeidgmfalniafiyeistfkdtshwyPYLKHIPLK--NtetdepilpvSFWTekqKRLLK 155
                 89******************99999999999998889999999*********9999999999999999998844..44577889998888898777888 PP

                 HHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS..X...................XXHCCCCCHCCCHEE............EETEEEEEECCCG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x...................xxxxxxxxxxxxxxx............xxxxxxxxxxxxx RF
         SET  58 asastllqklakdqkqaekedtdaalkasskaesdln..a...................skpeagafsaiagys............idaralksgngag 123
                   +     k+ + q++ ++  + a ++ + k+ + +                       +           +++            id   +++++  +
  CCD22753.1 156 GTTADVFHKILEPQEEVMEGFELA-IELAQKWSDEFGlsIpeyylslndpndkdefdtkF----------KRFCslafalssrvleID--QFHESGL-V 240
                 888888888888888777654333.33333333333333145555664444433322221..........333323333333332344..3344444.7 PP

                 TTGGGCEEXSSSSEEEEEE CS
                 xxxxxxxxxxxxxxxxxxx RF
         SET 124 plarflNHsCdpNcnltvq 142
                 p+++++NH C  N+n+++ 
  CCD22753.1 241 PIVDLINHHC-KNVNAEFL 258
                 **********.67776665 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.7e-06
                 TSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 146 rgprvavfAtrdIkkGeEltidYg 169
                  +++v +++tr I kGeE++i+Yg
  CCD22753.1 344 PDDYVDIVTTRGILKGEEIFISYG 367
                 578999*****************8 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.036
                 HHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS...X CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...x RF
         SET  56 akasastllqklakdqkqaekedtdaalkasskaesdln...a 95 
                 + +++ ++ ++++++ +++e+++ d++   + k+ +dl    +
  CCD22753.1 429 ELEEQIGSDEESEEESAEEEEQEIDDNDDNEEKWLEDLCwdrK 471
                 3444444455555555555555555555555555555543331 PP

>> Phage_lysozyme  Phage lysozyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         2   1.2e+04      18      33 ..      87     108 ..      65     111 .. 0.68
   2 ?   10.8   0.0   8.9e-05      0.53      71     104 ..     393     431 ..     376     434 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
                     H......-EHHHHHHHHHHHHH CS
  Phage_lysozyme  18 r......itkeeaagryekdlk 33 
                     +      +++ee++g+++ +++
      CCD22753.1  87 NsnianlLQDEEIDGMFALNIA 108
                     1444555788999999988876 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 8.9e-05
                     THHHHHHHHTTCHHHHHHHGGGSSEET.....CCCHHHH CS
  Phage_lysozyme  71 astllralnagdwkkacsairkslkaG.....kelnglk 104
                      ++l ++ln++++ k+ ++ir++++aG     k+++ l+
      CCD22753.1 393 GNSLTKMLNEKQYSKCEERIRWWIQAGrdlflKWYKELE 431
                     578899*********************777777777765 PP

>> MPP6  M-phase phosphoprotein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.9   1.2e+04      32      41 ..     114     123 ..      95     138 .. 0.76
   2 ?   -2.4   0.3         1   6.1e+03      87     109 ..     320     342 ..     304     355 .. 0.70
   3 ?   12.7   0.3   2.3e-05      0.14      57     107 ..     402     456 ..     374     475 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.9
        MPP6  32 kklkdssewv 41 
                 + +kd+s+w+
  CCD22753.1 114 STFKDTSHWY 123
                 6789999998 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1
        MPP6  87 kkeeeeeeeekekeedvsdeela 109
                  +e  ++ee++++ +  ++eel+
  CCD22753.1 320 HNEPFSDEEDDKQGMSKPEEELN 342
                 45555666666777777777765 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 2.3e-05
        MPP6  57 evsnvgfedl.essvifGRrsFggfnkevee...kkeeeeeeeekekeedvsdee 107
                 e+++ ++e+  +  + +GR  F +  ke+ee   + ee eee  +e+e++++d++
  CCD22753.1 402 EKQYSKCEERiRWWIQAGRDLFLKWYKELEEqigSDEESEEESAEEEEQEIDDND 456
                 78888888877888899*************7788444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 4123.12
//
Query:       CCD22754.1  [L=153]
Description: hypothetical protein NDAI_0A05990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-27   95.6   0.5    3.3e-27   95.4   0.5    1.1  1  Aha1_N    Activator of Hsp90 ATPase, N-terminal


Domain annotation for each model (and alignments):
>> Aha1_N  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.5   1.9e-31   3.3e-27       1     137 []      13     146 ..      13     146 .. 0.88

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 1.9e-31
      Aha1_N   1 eKdatpWskerlkelllslklene.eaksvkitevksveGdasvnqrKgKvifiydlklklewegtvk.....kedgkkvkGeieipelssenddddye 93 
                 +K+++pW+k++l+e+ll ++ +++ ++k +ki e++++eGd++v+qrKgK i+++dl++ ++ e+  +     +e+++  kG++ ipe+++++d+ ++ 
  CCD22754.1  13 DKNTLPWTKDYLNEKLLIFSKATDdNTKLIKIVEISKIEGDSNVSQRKGKPICYFDLHVDISLEVLGRneedeEEEKQLGKGSLVIPEFMHDEDNFEI- 110
                 7****************888888867779*****************************8888888777779877778889************988555. PP

      Aha1_N  94 ievsvkkdeekkekqklkelikskgvpklreklakfvkeLkeeh 137
                    +++       + +lke+i+  ++p  +e l +++++L+++h
  CCD22754.1 111 ---KLNG-----FTSDLKEVIQATFLPSFTEVLLNYQNDLIKSH 146
                 ...4444.....4568************************9977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1123.69
//
Query:       CCD22755.1  [L=217]
Description: hypothetical protein NDAI_0A06000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-42  143.8   0.1    6.6e-42  143.2   0.1    1.3  1  RNase_P_pop3  RNase P subunit Pop3


Domain annotation for each model (and alignments):
>> RNase_P_pop3  RNase P subunit Pop3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   0.1   3.7e-46   6.6e-42       1     157 [.      14     185 ..      14     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 3.7e-46
  RNase_P_pop3   1 KrkqvvkpvLenPytneaklWPivtdqklvleLlqekvlkklvrlle.s..keneeseltvglneivelLe....csesddvvllvcnkD.t.PsvL 88 
                   Kr+qv+kp+L+ P+  e + WP+++dqk+v +Llq+++l+k +++ + s  +   ++++ +++nei+  L+    + + d ++l+vcnkD + P++L
    CCD22755.1  14 KRRQVYKPLLDSPFIRESNYWPRIKDQKIVTHLLQNSILNKCKHFESsSipRSEWPWDILFDFNEIISFLSstdsHDKDDSAILFVCNKDqDiPAIL 110
                   9*********************************************96666677789**************77744444556********757**** PP

  RNase_P_pop3  89 lsqlpllvavanltvklvqlpksaqakldeklGlska..gmllvrkdasldkklaklvskkvee....lqipwLe 157
                   l+q+p+l++ ++ +v l+qlp+ + + ++e++ ++    g+ll+r +++ld +++ +++ ++ee    l ipwLe
    CCD22755.1 111 LQQIPILCYLSQRKVSLIQLPRGSLQMFQEAITDRAIdnGLLLLRGNSKLDSSFVRQIEYSIEEdtnpLTIPWLE 185
                   *******************************988765569**********************9733336799998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      266  (0.0148363); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1641.31
//
Query:       CCD22756.1  [L=543]
Description: hypothetical protein NDAI_0A06010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-10   40.9  10.3    7.6e-10   38.8  10.3    2.2  1  WSC           WSC domain
    2.3e-05   24.0   3.2      5e-05   23.0   3.2    1.5  1  Adeno_E3_CR2  Adenovirus E3 region protein CR2
    2.7e-05   23.5   3.0    0.00012   21.4   3.0    2.2  1  SKG6          Transmembrane alpha-helix domain
    0.00065   19.6   0.1     0.0014   18.5   0.1    1.5  1  Syndecan      Syndecan domain
  ------ inclusion threshold ------
      0.042   14.7   0.2       0.19   12.7   0.0    2.2  2  EphA2_TM      Ephrin type-A receptor 2 transmembrane domain


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8  10.3   2.1e-13   7.6e-10       1      82 []      47     127 ..      47     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 2.1e-13
         WSC   1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaa..vkassssCnasCsGdssqtCGg 82 
                 y+GCy  s + r+l+ +s+ s++ ++ + C ++C   g ++++l +g++CyCg+s + ++  + ++s sC+++C+G + +tCGg
  CCD22756.1  47 YQGCYAAS-DIRKLSLTSKGSYTYQSRSYCEQQCP--GAAFVALLQGDDCYCGQSEDLSSflKLSASGSCTVPCQGWPYETCGG 127
                 99****88.8999999999***************9..99*************99876666226666666**************8 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   3.2   1.4e-08     5e-05       6      34 ..     328     355 ..     325     357 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.4e-08
  Adeno_E3_CR2   6 iaIivaVvvGlaiIiicmlyYaCcYrkhr 34 
                    +I+v+VvvG  i+ii++l++++ Yr+ +
    CCD22756.1 328 AGIVVGVVVGT-ILIIVLLVFIFFYRRRH 355
                   58********6.67899*********976 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   3.0   3.4e-08   0.00012      10      37 ..     328     354 ..     316     355 .. 0.60

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.4e-08
        SKG6  10 vaIavaVaVPVaViiivLlailifvrRR 37 
                 + I+v+V+V+ + ii++L++i++ +rRR
  CCD22756.1 328 AGIVVGVVVGTILIIVLLVFIFF-YRRR 354
                 45777777776555544444444.6666 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   3.9e-07    0.0014       8      49 ..     326     365 ..     322     375 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.9e-07
    Syndecan   8 vlaaviggvvvgllfaillvlflvYRmrKKDEGSYaLdepkk 49 
                  +a++++gvvvg +++i+l++f+ +  r+ D  + +++e+k+
  CCD22756.1 326 AIAGIVVGVVVGTILIIVLLVFIFFYRRRHD--TVNIEENKQ 365
                 68**********9999999999877667777..455666665 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       3.6   1.3e+04      28      40 ..     158     170 ..     149     190 .. 0.35
   2 ?   12.7   0.0   5.2e-05      0.19       1      38 [.     330     382 ..     327     413 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.6
    EphA2_TM  28 knrkqksdlkske 40 
                 k++k++s+++s++
  CCD22756.1 158 KQSKSSSKPTSSS 170
                 2222222221111 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 5.2e-05
    EphA2_TM   1 iiaaavaglvllvilvilvlvlvrrrsknrkqksdl......k...........s 38 
                 i++++v+g +l+++l++ +++   rr+++  + +++      +           +
  CCD22756.1 330 IVVGVVVGTILIIVLLVFIFFY--RRRHDTVNIEENkqyqpySfgdedanpifiP 382
                 5667777777777655544444..4444433333322233330333444445541 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2028  (0.113113); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.43
# Mc/sec: 3834.26
//
Query:       CCD22757.1  [L=273]
Description: hypothetical protein NDAI_0A06020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-32  112.8   0.7    1.6e-32  112.8   0.7    1.9  2  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27


Domain annotation for each model (and alignments):
>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.7   9.1e-37   1.6e-32       2     127 ..      51     174 ..      50     175 .. 0.95
   2 ?   -0.1   0.1     0.078   1.4e+03      27     109 ..     241     260 ..     195     270 .. 0.51

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 9.1e-37
                     GGGTSSTTTTTTTTT-S--......S--.........---GGG..---EEEEHHHHHHTTTTGTTS------EEEGGGTTTTSSS......SEEE CS
  Ribosomal_L27A   2 GktgGrGhkGqkkrsgvkkkpgfeGGqmplyrrlpkrGfknskfkkeykvvnlkdLdelideerleladeaeeidleelaeaglikk..kdgvKv 94 
                     Gkt+GrG+kGqk+r  +k+k +feGGq+p+y+ +pk Gf+n + ++  +++nl++++ + d +rl+l  e e+++++++++ gl+++  kdgvK+
      CCD22757.1  51 GKTSGRGQKGQKAR--GKVKSWFEGGQTPIYKLFPKIGFTNVH-SQSLNELNLERIQWFHDMGRLKLM-EGEVLTMKKMRDLGLVTGtiKDGVKI 141
                     9*************..67789*******************965.8999*****************965.79************************ PP

                     E--S---.--EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  95 lgkgeltkklkvkaskfSkkAkekIeaaGGkve 127
                     lg+g+ + ++k++a k+S +A++ Ie+ GG+++
      CCD22757.1 142 LGRGNYKLPIKIEATKASDEAVKIIESQGGSFV 174
                     ******************************986 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.078
                     S--.........---GGG..---EEEEHHHHHHTTTTGTTS------EEEGGGTTTTSSS....SEEEE--S---.-.-EEEES CS
  Ribosomal_L27A  27 GqmplyrrlpkrGfknskfkkeykvvnlkdLdelideerleladeaeeidleelaeaglikkkdgvKvlgkgeltkk.lkvkas 109
                     G                                                                   + +++ +k  l+++ +
      CCD22757.1 241 GTN----------------------------------------------------------------MISRKQAKKSaLEIQLQ 260
                     222................................................................22222222211333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2068.07
//
Query:       CCD22758.1  [L=929]
Description: hypothetical protein NDAI_0A06030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-111  373.2  11.5   2.6e-111  372.8  11.5    1.2  1  Adaptin_N        Adaptin N terminal region
    1.7e-46  158.1   1.7    5.6e-46  156.4   1.7    2.0  1  COP-gamma_platf  Coatomer gamma subunit appendage platform su
    6.8e-27   93.9   0.2    1.8e-26   92.5   0.2    1.8  1  Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendag
    2.6e-12   47.0   0.1    2.8e-07   30.8   0.1    4.6  4  HEAT_2           HEAT repeats
    7.4e-07   29.3  13.9    6.9e-05   22.9   0.8    5.0  5  Cnd1             non-SMC mitotic condensation complex subunit
  ------ inclusion threshold ------
      0.016   15.4   0.6          3    8.3   0.0    4.2  3  HEAT             HEAT repeat
      0.041   14.4   0.3       0.25   11.9   0.3    2.5  1  HEAT_EZ          HEAT-like repeat
      0.062   13.6   0.6         22    5.4   0.1    2.8  2  PPP5             PPP5 TPR repeat region
        4.9    7.4   7.7         53    4.1   0.2    4.1  4  FANCI_S2         FANCI solenoid 2


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.8  11.5  1.3e-114  2.6e-111       2     524 .]      21     561 ..      20     561 .. 0.97

  Alignments for each domain:
  == domain 1  score: 372.8 bits;  conditional E-value: 1.3e-114
                 HHHCCHHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT---G.....HHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHH CS
   Adaptin_N   2 ekriqqelaeilnsnkdddekkkeavkkliylialGedvs.....flffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqli 95 
                 +++i q++++ +n+++++ ++++  +++l+ l+a+Ge+++      lff++ kl+++k+ +l++ vY+++++l++ sed +l++t+s++kD++  ++li
  CCD22758.1  21 KMTIYQDCMTTFNESPVNAKRCRILISRLLRLLANGETFPeneatTLFFSISKLFQHKNDSLRQSVYVAIKELSKISED-VLMATSSIMKDVQTGSPLI 118
                 6799*********************************99999999**********************************.9****************** PP

                 HHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSH................HHHHHHHHHHHH CS
   Adaptin_N  96 rglALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdp................gvvlaAvallee 178
                 + +A+r+L+ + ++++a + ++ +++++++r+p v+++A+++++ l+ +++  ++++ ++e++e+++d +                 + +++A+ ll+e
  CCD22758.1 119 VPNAIRSLTYVLDESTAFSAERLLRSAIVSRDPAVSSAALITSYNLLPISEATVKRF-ANETHEAIKDPKEvlgdnperdyparstfITQYHALGLLYE 216
                 ******************************************************996.************889************************** PP

                 HHCCCCCCC.HHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST......HHHCCHH CS
   Adaptin_N 179 ikkndrlll.kllpklvrrLcnllteldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapkne......livlavn 270
                 +kknd+l+l k++++ + +        +++++v++ik++t+l+ ++p++   +++ ++l+++++s++++V +e++++i+++a + +           ++
  CCD22758.1 217 LKKNDKLALlKIAQECFPN---W-VLKSSIAKVELIKVMTDLVFRDPSLF--ESFQNQLEQWFASRHESVQIECAKMITSFAMAHPsyvsseFFASTIT 309
                 *******666666666666...4.48899*********************..78*************************888777778888877899** PP

                 CHHHHHHSSCCTCHHHHHCHHHHHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHTTSSXXHHHHHHHHHHHHHHHH CS
   Adaptin_N 271 aLvrllsskdenlryvaLrtllkivkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyvkevadedfksklvkaIgrlae 369
                  L+++l+ +++ + ++aLr l+k+++ +p++v  ++ ++++l++  +++i+++a+++llk+++++N++ ++++++k+++ev+d  fk+ +++a+++l+ 
  CCD22758.1 310 LLQSMLTVPRPPTLFAALRILNKVSMVSPEKVVICNPELESLINHSNRNISTYAITTLLKTGTDKNISNLISTITKFIHEVSDD-FKIIIINAVRTLSL 407
                 *********************************************************************************998.************** PP

                 HSCCHHHHHHHHHHHHHTTXXHHH..HHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT...HHHHHHCTTTTTTTS CS
   Adaptin_N 370 kfatdaewvldvllellslsgesv..kdeivevirdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsntesasdllrslaekfvle 466
                 +f+ +++++ld+l+++l++s++++  k++ive+++++++ vp+++e ++e+L++++e++e++e++ ++++llG++g+ +s+   +s ++r++++++vle
  CCD22758.1 408 NFPHEWKSILDFLIDILKNSEGGFdyKNSIVEALIEIVSFVPQSKEPALENLCDFIEDCEYNELLVRILHLLGKEGPSTSQ---PSLYVRHIYNRVVLE 503
                 *********************99999******************************************************9...*************** PP

                 XHHHHHHHHHHHHHHHHCXGCC.THXHHHHHHHHHHHXXSHHHHHHHHHHHHHHCCXC CS
   Adaptin_N 467 sekvklqiltalvKlyltspdketqekliqlvlslatssdlevrdRaveylqllssak 524
                 + ++++++++al K+ lt++d   +e++i+l++++a+++d+evrdRa++ l++++s+k
  CCD22758.1 504 NSIIRSAAVVALSKFALTKNDSALNESIISLLRRIANDKDDEVRDRATIALKFIESSK 561
                 ******************************************************9875 PP

>> COP-gamma_platf  Coatomer gamma subunit appendage platform subdomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.4   1.7   2.8e-49   5.6e-46       2     148 ..     666     811 ..     665     815 .. 0.92

  Alignments for each domain:
  == domain 1  score: 156.4 bits;  conditional E-value: 2.8e-49
  COP-gamma_platf   2 eyaeqlaaipefaelGkllksskpveLTesetEYvVsvvKhifkehiVlqfnikNtledqvLenvsvqlep..eeeelfeevfiipiekLkyne 93 
                      +y e+l +i+ef+ +G+l++sskp++LTese+E+ V+ vKh+fkeh+Vlqfni Ntl+d++L+nvsv++ +  e+e++ ee+f+ipie+L ++ 
       CCD22758.1 666 QYIEELLSIEEFKVFGNLINSSKPISLTESEAEFEVRGVKHLFKEHVVLQFNIANTLPDVALDNVSVACISqlEDESQLEELFTIPIERLLPSV 759
                      799****************************************************************877744455599999************ PP

  COP-gamma_platf  94 pgsvyvvlkrpseeeeklvsatfsntLkFtvkevdpstgepeeed.gyeDeYqled 148
                      ++ +y+++k+p   e  +v  +f ntL+Ft++e++p+t+e+ e d g++DeY++++
       CCD22758.1 760 ESPCYIAYKKP---E-GIVLDEFVNTLTFTSRELNPDTNEVYEGDeGFQDEYEIDS 811
                      *********54...3.467777********************************97 PP

>> Coatomer_g_Cpla  Coatomer subunit gamma-1 C-terminal appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.2     9e-30   1.8e-26       1     114 [.     817     927 ..     817     928 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 9e-30
                      GGGEEE---S-HHHHHHHH-STT-EEEEEEESS---HHHHHHHHHHHHT-EE-TTTT---SS-SEEEEEEEEEETT.S-EEEEEEEEEE..SS. CS
  Coatomer_g_Cpla   1 sDyikpvavsnFeaaWeeleseaeavetfaLssvksleeavdkliellgmqplegsdkvpenassHtLklaGkfvg.gekvlvrarlalssskg 93 
                      +Dyik+++vs+F++a++el++  ++v++++L++  sl+++ ++li+++++ ple+s++v+ ++s HtLkl+Gk++  g+k+++ +r+++ss kg
       CCD22758.1 817 GDYIKSSFVSSFDTAFDELSN--SEVAVYNLQEDLSLQDVTNRLITSTSCLPLENSQNVS-DSSEHTLKLFGKSALnGSKIALIVRMVKSS-KG 906
                      6********************..8*********************************776.5677***********999**********88.99 PP

                      EEEEEEEEESSHHHHHHHHHH CS
  Coatomer_g_Cpla  94 vtlkltvRsedeevaelvlsa 114
                      ++lk + ++ed+++++ ++++
       CCD22758.1 907 IALKASGKAEDATLCSSLVNG 927
                      *****************9986 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.042        83      19      51 ..     121     157 ..      71     161 .. 0.56
   2 ?    5.5   0.0     0.011        23      32      68 ..     341     380 ..     307     385 .. 0.73
   3 ?    0.5   0.0      0.42   8.4e+02       4      44 ..     386     428 ..     382     455 .. 0.74
   4 !   30.8   0.1   1.4e-10   2.8e-07       1      88 []     456     555 ..     456     555 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.042
      HEAT_2  19 aairaLgrignp....ealpaLvellededpavRraa 51 
                 +air+L    ++    +a ++L++++ + dpav  aa
  CCD22758.1 121 NAIRSLTYVLDEstafSAERLLRSAIVSRDPAVSSAA 157
                 4555555544443334445555555566666665555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.011
      HEAT_2  32 a...lpaLvellededpavRraaaeaLgaigdpealpaLk 68 
                 +    p L +l++++++++   a+++L + g++++++ L 
  CCD22758.1 341 VvicNPELESLINHSNRNISTYAITTLLKTGTDKNISNLI 380
                 3455699*****************************9997 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.42
      HEAT_2   4 LlqalendpdpevrraairaLg.rignp..ealpaLvelleded 44 
                 ++  + +d ++ + ++a+r+L  ++ ++  ++l+ L+++l++++
  CCD22758.1 386 FIHEV-SDDFKIIIINAVRTLSlNFPHEwkSILDFLIDILKNSE 428
                 56666.78888888999999998788877799999999997654 PP

  == domain 4  score: 30.8 bits;  conditional E-value: 1.4e-10
      HEAT_2   1 ldaLlqalendpdpevrraairaLg.....rignpea.lpaLvellededpavRraaaeaLgaig.......dpealpaLkellddddddvvReaAaea 86 
                 l+ L+ ++e+++  e+  ++++ Lg     + ++  + ++ + + +  e++ +R aa+ aL++++       ++e++ +L+++ ++d+dd+vR +A++a
  CCD22758.1 456 LENLCDFIEDCEYNELLVRILHLLGkegpsTSQPS-LyVRHIYNRVVLENSIIRSAAVVALSKFAltkndsaLNESIISLLRRIANDKDDEVRDRATIA 553
                 5789****999999***********6655333333.269999*********************96444443358899999999**************** PP

      HEAT_2  87 La 88 
                 L+
  CCD22758.1 554 LK 555
                 96 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.25     5e+02      58      90 ..      65      98 ..       8     113 .. 0.66
   2 ?    3.3   0.0     0.037        74       5      72 ..     121     188 ..     117     194 .. 0.89
   3 ?   -0.4   0.1      0.54   1.1e+03      80     160 ..     212     288 ..     207     290 .. 0.81
   4 !    6.4   0.6    0.0042       8.4      61     147 ..     346     426 ..     322     447 .. 0.65
   5 !   22.9   0.8   3.5e-08   6.9e-05      22     105 ..     492     577 ..     488     621 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.25
        Cnd1 58 g.flselaklleDenprVvanalaalteisekse 90
                  +++ + kl + +n++ ++++  a++e+s+ se
  CCD22758.1 65 TtLFFSISKLFQHKNDSLRQSVYVAIKELSKISE 98
                1366666777777777777777777777776653 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.037
        Cnd1   5 lairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenp 72 
                 +air+l+++  +++       Lr+++  +dp V   a+i+  +L+      +k f +e  ++++D+++
  CCD22758.1 121 NAIRSLTYVLDESTAFSAERLLRSAIVSRDPAVSSAALITSYNLLPISEATVKRFANETHEAIKDPKE 188
                 89999999999999999999************************888888888999999999999976 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.54
        Cnd1  80 aalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikvi 160
                  +l e++++++ a++++ ++++ + + +    s  + ++ ++++++ + +d +  es  ++l + +    ++v++++ k+i
  CCD22758.1 212 GLLYELKKNDKLALLKIAQECFPNWVLK----SSIAKVELIKVMTDLVFRDPSLFESFQNQLEQWFASRHESVQIECAKMI 288
                 5788888888888999999998888844....6677778888888888888888899999999999999999999999887 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0042
        Cnd1  61 selaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqh 147
                  el++l++ +n+++++ a++ l +  + +  +i nl ++i + ++    e+s +  i i++++ +   +  +e +s+++ l++ l++
  CCD22758.1 346 PELESLINHSNRNISTYAITTLLKTGTDK--NISNLISTITKFIH----EVSDDFKIIIINAVRTLSLNFPHEWKSILDFLIDILKN 426
                 58999***********9999998877764..45555555555444....55555555555555555555444455555555444444 PP

  == domain 5  score: 22.9 bits;  conditional E-value: 3.5e-08
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiiskls 105
                 +v ++++r+  e++ +R  a+++++k    +nd   ++ ++s l+++ +D++++V++ a +al+ i + +en+  + l+++ +++ 
  CCD22758.1 492 YVRHIYNRVVLENSIIRSAAVVALSKFalTKNDSALNESIISLLRRIANDKDDEVRDRATIALKFIESSKENIKAQDLIQSKYSYD 577
                 67899999999***************998999***********************************9987766555444333222 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.48   9.6e+02       6      30 ..      72      96 ..      70      97 .. 0.87
   2 ?    0.6   0.1      0.48   9.6e+02      13      28 ..     504     519 ..     503     520 .. 0.84
   3 ?    8.3   0.0    0.0015         3       1      24 [.     531     554 ..     531     557 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.48
                HHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT  6 lkllsDpspeVReaAakaLgalaev 30
                 kl ++++ + R+++  a+ +l+++
  CCD22758.1 72 SKLFQHKNDSLRQSVYVAIKELSKI 96
                5888***********9999999875 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.48
                 SHHHHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLgala 28 
                 ++ +R+aA+ aL ++a
  CCD22758.1 504 NSIIRSAAVVALSKFA 519
                 6679********9986 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0015
                 HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaL 24 
                 ++ ll +  +D++ eVR+ A  aL
  CCD22758.1 531 IISLLRRIANDKDDEVRDRATIAL 554
                 567777778***********9998 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   0.00012      0.25       7      52 ..     511     554 ..     505     557 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
     HEAT_EZ   7 AawaLGr.laggepellqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 A+ aL+  ++  ++ +l+   + i+ +L +  nd++deVR  A +aL
  CCD22758.1 511 AVVALSKfALTKNDSALN---ESIISLLRRIANDKDDEVRDRATIAL 554
                 555555555555555555...689**********************9 PP

>> PPP5  PPP5 TPR repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.012        24      50      78 ..     550     578 ..     533     590 .. 0.81
   2 ?    5.4   0.1     0.011        22      31      65 ..     630     678 ..     613     686 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.012
        PPP5  50 ekitqeFvkamierfkkgkklhkkyvyai 78 
                  +i  +F+++  e++k++  ++ ky y +
  CCD22758.1 550 ATIALKFIESSKENIKAQDLIQSKYSYDL 578
                 37789********************9975 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.011
        PPP5  31 lesieveks...........YdGprLe.eeeekitqeFvkam..ierfk 65 
                 le i+ e++           Y+G +L+ +e++ ++ ++++++  ie+fk
  CCD22758.1 630 LEGINNEDEepitkrldtntYKGATLDeHEQDLLSTQYIEELlsIEEFK 678
                 44444444444444444555******965566777*****994456666 PP

>> FANCI_S2  FANCI solenoid 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.63   1.2e+03     102     146 ..      47      91 ..      26     108 .. 0.78
   2 ?    4.0   0.0     0.028        56      44     108 ..     209     273 ..     168     290 .. 0.86
   3 ?   -0.3   0.1      0.57   1.1e+03      41     117 ..     376     451 ..     348     457 .. 0.67
   4 ?    4.1   0.2     0.027        53     128     160 ..     519     551 ..     505     554 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.63
    FANCI_S2 102 sklkelldylsflpletatallkAllPLlkvseslrdalilvLRK 146
                 s+l +ll + + +p++ at l+ +++ L++ +++   + + v  K
  CCD22758.1  47 SRLLRLLANGETFPENEATTLFFSISKLFQHKNDSLRQSVYVAIK 91 
                 677788888899999999999999999999886555554554444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.028
    FANCI_S2  44 lgsqiLlelfkvhesarseiieqllsriitkseeevsqyiklLselvksapltllesssklkell 108
                 ++  +L el k  + a  +i ++++ + + ks+    + ik +++lv + p  +++++++l++ +
  CCD22758.1 209 HALGLLYELKKNDKLALLKIAQECFPNWVLKSSIAKVELIKVMTDLVFRDPSLFESFQNQLEQWF 273
                 445577899999999999******98888888888899***********************9987 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.57
    FANCI_S2  41 aaklgsqiLlelfkvhesarseiieqllsriitkseeevsqyiklLselvksapltllesssklkelldylsflple 117
                 + +l s+i + + +v ++++  ii+  +  +  + + e + +++ L ++ k+    ++ + s ++ l++ +sf+p++
  CCD22758.1 376 ISNLISTITKFIHEVSDDFKIIIINA-VRTLSLNFPHEWKSILDFLIDILKNSEGGFDYKNSIVEALIEIVSFVPQS 451
                 55555554444444444444444444.44555555556789999999999999999988888899999999999876 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.027
    FANCI_S2 128 PLlkvseslrdalilvLRKalfsreldaRkiAv 160
                  L k   +l +++i +LR+    +++++R  A+
  CCD22758.1 519 ALTKNDSALNESIISLLRRIANDKDDEVRDRAT 551
                 688999999********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (929 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 6619.68
//
Query:       CCD22759.1  [L=369]
Description: hypothetical protein NDAI_0A06040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-112  375.2   3.0   1.7e-112  375.0   3.0    1.0  1  Rcd1      Cell differentiation family, Rcd1-like
  ------ inclusion threshold ------
      0.073   12.9   0.0       0.15   11.9   0.0    1.5  1  SRX       SRX, signal recognition particle receptor alpha sub


Domain annotation for each model (and alignments):
>> Rcd1  Cell differentiation family, Rcd1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.0   3.0  1.9e-116  1.7e-112       1     258 [.     104     362 ..     104     363 .. 0.98

  Alignments for each domain:
  == domain 1  score: 375.0 bits;  conditional E-value: 1.9e-116
        Rcd1   1 lildlakpekreeaLleLskkresvedlallLwesfgtvaaLLqeivsiYpllspptltaaesnrvcnaLallqcvashpetrklflkakiplyLypfL 99 
                 +i++++   ++e+aLleL +kre+++dla++Lw sfg+++ LL+ei+s+Yp+l+p+ l+++ snrvcnaL llqcvashpet++lfl+a+ipl+L+pfL
  CCD22759.1 104 WICQVTYGPQKEQALLELGRKREQFDDLAIVLWSSFGVMTSLLNEIISVYPMLQPQMLSNQLSNRVCNALVLLQCVASHPETKHLFLQAHIPLFLFPFL 202
                 899999999****************************************************************************************** PP

        Rcd1 100 nttsksrefEylRltsLgvigaLvktddkevikflldteivplclrimesGselsktvAtfIlqkiLlddeGLeYicqtaerfsavaevLnkmvvsl.t 197
                 ntts++r fEylRltsLgvigaLvk+d+++vi+fll+t+ivplclrimes+selsktvA+fIlqkiLldd GL+Yic+t erf+av++vL+ mv +l +
  CCD22759.1 203 NTTSRQRTFEYLRLTSLGVIGALVKSDSQDVITFLLRTDIVPLCLRIMESSSELSKTVAIFILQKILLDDVGLQYICATLERFYAVTNVLKDMVDHLtV 301
                 **********************************************************************************************88856 PP

        Rcd1 198 eepssrllkhvircYlrLsdnprareaLkkclpelLkdktfkellkedpetkkwlkqLlen 258
                 + p  rllkh+ircYlrLsd+ +ar+ L+ +lp++L+d+tf+e+l++d   k++l qLl +
  CCD22759.1 302 NAPPGRLLKHIIRCYLRLSDDLEARRLLRVVLPASLRDNTFAEVLSDDVGSKRCLAQLLLT 362
                 788*******************************************************965 PP

>> SRX  SRX, signal recognition particle receptor alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.6e-05      0.15      60     118 ..      83     148 ..      64     154 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.6e-05
                 -------EEEEEEETTTTEEEE...EEES...S--.HHHHHHHHHHHHHHHHHHHHTTHHHHHHHH CS
         SRX  60 skssksfsalfhvskqPelyfv...vtya...eqs.leLnkeaeevlklalkLWdsLelnesilkn 118
                 + +s+++    h    P++y+    vty    eq  leL +  e+  +la+ LW s ++ +s+l++
  CCD22759.1  83 QLQSQQHQGSSHALDDPNVYHWicqVTYGpqkEQAlLELGRKREQFDDLAIVLWSSFGVMTSLLNE 148
                 3444778888899999999975244799844433358*********************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2966.93
//
Query:       CCD22760.1  [L=286]
Description: hypothetical protein NDAI_0A06050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-22   79.7   0.0    7.7e-22   77.4   0.0    1.9  2  Cyclin_N  Cyclin, N-terminal domain
    8.7e-07   29.4   0.0    1.9e-06   28.3   0.0    1.6  1  Cyclin    Cyclin


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   8.6e-26   7.7e-22       1     127 []      19     152 ..      19     152 .. 0.89
   2 ?   -0.2   0.1     0.085   7.6e+02       3      20 ..     249     266 ..     219     282 .. 0.64

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 8.6e-26
                 HHHHHHHHHHCHTS-STTCT..TCTSSS-H.HHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CC......CHHHHHHHHHHHHHHHHSS CS
    Cyclin_N   1 dilknlieqelkflpkpdyl..dqqpelnp.emRailidwlvevaekfkltpetlflavnyldRflskksvpkd......klqlvgatcLllAaKveei 90 
                 di+++l++ +lk lp ++y    ++p+ +     ++l+++++++++++++ + tl+++v yl+++ +   +pkd      ++++++++cL+l+aK++++
  CCD22760.1  19 DIIRFLTNATLKVLPASNYPspPSSPNDEYqPRLPSLMTFITNLVRYTNVYTPTLLTTVCYLNKLKR--LLPKDatglpsTIHRIFLACLILSAKFHND 115
                 799999999**********98866666333245578**************************99877..66666667788******************* PP

                 S---HHHHHHHTTTSS-HHHHHHHHHHHHHHTTT--- CS
    Cyclin_N  91 sppkledlvyitdeafteeeilemErliLetLnfdls 127
                 s+p  +++v +td+ ft e+++ mEr++L+ L++dl+
  CCD22760.1 116 SSPLNKHWVKYTDGLFTLEDVNLMERQLLQLLDWDLR 152
                 ***********************************95 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.085
                 HHHHHHHHCHTS-STTCT CS
    Cyclin_N   3 lknlieqelkflpkpdyl 20 
                 ++n++++++++l+k + +
  CCD22760.1 249 FTNVRTNSNTQLEKLNSM 266
                 445555555555555555 PP

>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   2.2e-10   1.9e-06      65     161 .]      54     151 ..      22     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 2.2e-10
                 -HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHT..S-HHHHHHHHHHHHHHTTT-- CS
      Cyclin  65 sigsylsrlqkfgesaplvllgtliYldrivkrcvsealvvtsanihRllivallvatKflvDlsysnekfakvgg..islkELnkLEidFlflvdFdl 161
                 s++  ++ l +++++ +  ll+t+ Yl+++ +  + ++ +    +ihR+ ++ l  + Kf +D+s  n+++ k ++    l+++n +E + l l+d+dl
  CCD22760.1  54 SLMTFITNLVRYTNVYTPTLLTTVCYLNKLKR-LLPKDATGLPSTIHRIFLACLILSAKFHNDSSPLNKHWVKYTDglFTLEDVNLMERQLLQLLDWDL 151
                 5677888999********************98.666666666779*****************************9976799***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2124.18
//
Query:       CCD22761.1  [L=338]
Description: hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-17   64.5   0.0    2.2e-17   63.7   0.0    1.4  1  AAA              ATPase family associated with various cellul
    6.1e-17   61.9   0.0    6.2e-12   45.6   0.1    2.3  2  DNA_pol3_delta2  DNA polymerase III, delta subunit
    7.4e-14   51.9   0.1    2.4e-13   50.3   0.0    1.9  1  Rep_fac_C        Replication factor C C-terminal domain
    1.8e-07   31.2   0.0    1.1e-06   28.7   0.0    2.1  1  Rad17            Rad17 P-loop domain
    3.8e-07   30.3   0.0    1.1e-06   28.9   0.0    1.7  1  AAA_assoc_2      AAA C-terminal domain
    4.1e-06   27.3   0.0    6.8e-06   26.6   0.0    1.6  1  AAA_16           AAA ATPase domain
    6.8e-06   26.0   0.2    1.1e-05   25.3   0.2    1.3  1  DNA_pol3_delta   DNA polymerase III, delta subunit
    8.2e-06   25.6   0.0    1.7e-05   24.6   0.0    1.7  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.2e-05   25.4   0.0     0.0031   17.5   0.0    2.3  2  ResIII           Type III restriction enzyme, res subunit
    1.3e-05   25.4   0.7       0.14   12.5   0.1    2.7  3  AAA_22           AAA domain
    4.5e-05   23.4   0.1    0.00035   20.4   0.0    1.9  2  AAA_11           AAA domain
    4.8e-05   23.4   0.0    0.00011   22.3   0.0    1.5  1  AAA_14           AAA domain
    6.5e-05   22.2   0.0    9.6e-05   21.7   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
    6.9e-05   22.7   0.0     0.0012   18.6   0.0    2.3  2  AAA_30           AAA domain
    0.00052   19.8   0.0      0.001   18.8   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
    0.00086   19.3   0.1     0.0042   17.1   0.1    2.1  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00087   19.1   0.0     0.0015   18.3   0.0    1.3  1  AAA_24           AAA domain
     0.0012   18.4   0.0     0.0025   17.4   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
     0.0015   19.1   0.1     0.0037   17.8   0.1    2.0  1  AAA_18           AAA domain
     0.0025   17.6   0.1      0.018   14.8   0.1    2.1  1  DEAD             DEAD/DEAH box helicase
     0.0027   17.5   0.0      0.008   15.9   0.0    1.7  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0034   17.7   0.2       0.18   12.1   0.1    2.4  2  AAA_19           AAA domain
     0.0065   16.3   0.0      0.011   15.7   0.0    1.3  1  AAA_3            ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.015   14.9   0.3       0.26   10.8   0.0    2.5  3  AAA_25           AAA domain
      0.018   14.4   0.0      0.099   12.0   0.0    2.0  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.03   14.7   0.0      0.059   13.8   0.0    1.6  1  RNA_helicase     RNA helicase
      0.034   13.3   0.0      0.061   12.5   0.0    1.4  1  TIP49            TIP49 P-loop domain
       0.05   13.0   0.0        1.4    8.3   0.0    2.4  3  TniB             Bacterial TniB protein
      0.051   13.8   0.0      0.092   13.0   0.0    1.5  1  AAA_28           AAA domain
      0.052   13.0   0.0        4.5    6.7   0.0    2.3  2  PhoH             PhoH-like protein
      0.058   13.9   0.1       0.27   11.8   0.0    2.1  1  ABC_tran         ABC transporter
      0.073   11.8   0.0       0.11   11.2   0.0    1.3  1  SNF2_N           SNF2 family N-terminal domain
      0.079   12.7   0.0       0.13   12.0   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
      0.096   12.8   0.1       0.25   11.5   0.1    1.7  1  AAA_33           AAA domain
       0.15   11.3   0.1       0.63    9.2   0.1    1.8  1  DUF2075          Uncharacterized conserved protein (DUF2075)


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   4.3e-20   2.2e-17       1     129 [.      50     167 ..      50     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 4.3e-20
                 EEEESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfkeakeka.kpsilfiDEidalaksrsgseseeeervvnqLltel 93 
                 +l+yGppGtGKT+++ a+a+e+     +  +le+++s+ +   ++   ++i+++ ++ +  + + + +++DE+da++++            +n+L + +
  CCD22761.1  50 LLFYGPPGTGKTSTIVALAREIfgknySNMVLELNASDDR--GIEVVRNQIKDFASTRQIFSkGFKLIILDEADAMTNAA-----------QNALRRII 135
                 69*******************8665434668*********..77777777777776644444335***********9999...........******** PP

                 HHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEE CS
         AAA  94 dgvkkkeskvivigatnrpdkldpallrgRfdrkie 129
                 ++++k   ++ +++ +n+ +kl+pall +R++r  +
  CCD22761.1 136 EKYTK---NTRFCILANYSHKLTPALL-SRCTRFRF 167
                 *****...589****************.99988766 PP

>> DNA_pol3_delta2  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   5.4e-05     0.028       1      49 [.      30      77 ..      30      87 .. 0.92
   2 !   45.6   0.1   1.2e-14   6.2e-12      84     162 ..      90     170 ..      79     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.4e-05
  DNA_pol3_delta2  1 gqeealkilskalksgrlahayLfeGdegigkkelalnlakallceekn 49
                     gq+e+++  +k l++g+l h +Lf+G+ g+gk ++  +la++++ ++ +
       CCD22761.1 30 GQTEVVTTVRKFLEEGKLPH-LLFYGPPGTGKTSTIVALAREIFGKNYS 77
                     699999*************9.8*********************998765 PP

  == domain 2  score: 45.6 bits;  conditional E-value: 1.2e-14
  DNA_pol3_delta2  84 kldqirelieelsrkpre..skkkiiiiedaekmtksAaNalLktlEEPsenaifiLitsdtnklLktirSRcqelkfspl 162
                       ++ +r+ i+++  + ++     k+ii+++a+ mt++A+Nal +++E   +n+ f ++++ ++kl + + SRc  ++f+pl
       CCD22761.1  90 GIEVVRNQIKDFASTRQIfsKGFKLIILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPL 170
                      57889976666654444322668********************************************************97 PP

>> Rep_fac_C  Replication factor C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   4.7e-16   2.4e-13       1      87 [.     240     326 ..     240     327 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 4.7e-16
                 --HHHHHHHHHHHHHT-HHHHHHHHHHHHHHC---HHHHHHHHHHHGCCS..S-H.HHHHHHHHHHHHHHHHHHCTH-HHHHHHHHHH CS
   Rep_fac_C   1 phpteieeileaclngdfeeaykklrellvekGysaediltqlhrvvkeqeelpe.aqkleilellgeiekrlveGasehlqlsalla 87 
                 p+p+++++il+++l++d++ ay +l++l   kG+++ d+++ + +++ +  el++  +++ +l++lg+ie+ +++G+++++q sa++ 
  CCD22761.1 240 PRPADLKTILKSILEDDWSSAYYTLTKLRSTKGLALIDLIEGIIKLLEDY-ELKNeLTRISLLSKLGDIEYSISKGGNDKIQSSAVIG 326
                 79***********************************************6.6886266**************************9986 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.1e-09   1.1e-06       4      78 ..      11      81 ..       8     148 .. 0.73

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 2.1e-09
       Rad17  4 denelWfekykPekaeelavhkkkieevkewlkadvLesrkkriLLisGPsGCgkstvvkvLskel.giklrewln 78
                ++n +W+eky+Pe ++++    + +  v+++l+   L++     LL  GP+G gk+ ++  L++e  g ++ + + 
  CCD22761.1 11 NDNLPWVEKYRPESLDDVYGQTEVVTTVRKFLEEGKLPH-----LLFYGPPGTGKTSTIVALAREIfGKNYSNMVL 81
                67789**************99999999999888888876.....6******************9851555544432 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.1e-09   1.1e-06       3      54 ..     186     236 ..     185     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 2.1e-09
                  X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX CS
  AAA_assoc_2   3 kklkleddalealaeladGDaRkaLnlLElaaeaaeakegkieitledleea 54 
                  +++k++dda +al++l++GD+R++Ln+L++  ++ ++   ++ei  + + e+
   CCD22761.1 186 ENIKISDDAKDALITLSQGDMRRVLNVLQASKATLDD-PANEEIHADVIYEC 236
                  689**************************88877765.77888888777766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.3e-08   6.8e-06       5     107 ..      31     166 ..      27     288 .. 0.71

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.3e-08
      AAA_16   5 ReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekd...............ggiflrgkcdqlesaipysalaqalareellrqllde 88 
                   e + +++  le   +g  + +l++G++G+GK+s + +l+r++ ++               g+ ++r + +++  a +++++ + + +  ++ +++d+
  CCD22761.1  31 QTEVVTTVRKFLE---EGKLPHLLFYGPPGTGKTSTIVALAREIFGKnysnmvlelnasddrGIEVVRNQIKDF--ASTRQIFSKGF-K-LIILDEADA 122
                 5555555555555...77779****************9999999988888777777777775566677777777..22233455555.3.344444444 PP

      AAA_16  89 aesaeleawrekleeala.........................a 107
                  ++a+++a r+ +e+ ++                          
  CCD22761.1 123 MTNAAQNALRRIIEKYTKntrfcilanyshkltpallsrctrfR 166
                 34444444444444444477777777765555555555555552 PP

>> DNA_pol3_delta  DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.2   2.2e-08   1.1e-05      49     170 ..     102     214 ..      65     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.2e-08
                     STTTTSSSSE.EEEEEE--.....TT-S-TTHHHHHHHHTTT--SSEEEEEEES.S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHT CS
  DNA_pol3_delta  49 cetlpffsdk.rivvlknpklltkesklnekllkeLeeylsnlpedtlLiliapkklderkklvklLkkkatvveaktlkeeelkkwiqkraqel 142
                     + t   fs+  ++++l+ +      +  +   +++L ++++++ ++t +++ a+       kl+  L ++ t +++++l  + + k i++++ ++
      CCD22761.1 102 ASTRQIFSKGfKLIILDEA------DAMTNAAQNALRRIIEKYTKNTRFCILAN----YSHKLTPALLSRCTRFRFQPLPRDAIEKRISNVLIHE 186
                     3333333332244555554......6688889999*******************....56789999999************************** PP

                     T-EE-HHHHHHHHHHHTT-HHHHHHHHH CS
  DNA_pol3_delta 143 glkiekealelLlelvennlsaikqele 170
                     ++ki+++a + L+ l+ ++++++ + l+
      CCD22761.1 187 NIKISDDAKDALITLSQGDMRRVLNVLQ 214
                     **********************998776 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   3.3e-08   1.7e-05       2      58 ..      21      72 ..      20     139 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.3e-08
      RuvB_N  2 rPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelg 58
                rP+sl++  gq++v ++++ f+e       +l h+l+yGpPG Gkt+    +a+e+ 
  CCD22761.1 21 RPESLDDVYGQTEVVTTVRKFLEEG-----KLPHLLFYGPPGTGKTSTIVALAREIF 72
                9*****************9999865.....589*************99999999874 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     6e-06    0.0031       6      58 ..      29      81 ..      25      88 .. 0.88
   2 ?    5.3   0.0     0.034        17     124     162 ..     103     143 ..      89     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6e-06
                HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EE CS
      ResIII  6 eyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekfl 58
                + Q+e+++ +++ l++ +  ++l+  + GtGKT ++++l+++++ k++ + +l
  CCD22761.1 29 YGQTEVVTTVRKFLEEGKLPHLLFYGPPGTGKTSTIVALAREIFGKNYSNMVL 81
                689***********977777*************************98876555 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.034
                 ...HHHTTT-SEEEEETGGGTTS...TTTHHHHHT---SEE CS
      ResIII 124 eseellrdrfdviiiDEaHrlgak..kswreilekfkeavl 162
                  + +  ++ f++ii DEa  ++ +  ++ r+i+ek+ ++++
  CCD22761.1 103 STRQIFSKGFKLIILDEADAMTNAaqNALRRIIEKYTKNTR 143
                 56677889999*******99988644599999888877665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0012       0.6       7      27 ..      49      69 ..      44      74 .. 0.88
   2 !   12.5   0.1   0.00027      0.14      75     118 ..      91     137 ..      71     167 .. 0.70
   3 ?   -2.1   0.0       8.3   4.3e+03      55      62 ..     247     254 ..     211     301 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0012
      AAA_22  7 ilvvtGesGtGKTtllrrlle 27
                +l+ +G++GtGKT ++  l++
  CCD22761.1 49 HLLFYGPPGTGKTSTIVALAR 69
                7899**********9988876 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00027
      AAA_22  75 seellealeqalrarav....ielliiDEaqhlrseealeeLrsllnl 118
                  e +++++ + +++r+      +l+i+DEa+ + +++a + Lr++ + 
  CCD22761.1  91 IEVVRNQIKDFASTRQIfskgFKLIILDEADAM-TNAAQNALRRIIEK 137
                 45556778888888777888889**********.88888888777543 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 8.3
      AAA_22  55 dllrellr 62 
                 ++l+ +l+
  CCD22761.1 247 TILKSILE 254
                 44444433 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.9e-07   0.00035      10      42 ..      38      72 ..      31      90 .. 0.78
   2 ?   -0.1   0.0       1.3   6.5e+02     214     226 ..     108     120 ..      94     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 6.9e-07
      AAA_11 10 iksalsese..itliqGPPGtgKTktivellsqll 42
                ++++l+e +    l+ GPPGtgKT+tiv+l +++ 
  CCD22761.1 38 VRKFLEEGKlpHLLFYGPPGTGKTSTIVALAREIF 72
                566777776666899***************99984 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.3
      AAA_11 214 lakkfdvviIDEA 226
                 + k+f+++i DEA
  CCD22761.1 108 FSKGFKLIILDEA 120
                 3459********9 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.1e-07   0.00011       6      99 ..      51     148 ..      48     170 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.1e-07
      AAA_14   6 vitGaRrvGKTtllkqlikell..vkkesilyinldderdkkladpekllelilek.lkeekktylflDEiqevpe.wekalkslvdeg.knldvivtG 99 
                 +  G+  +GKT  +  l++e +    ++ +l++n  d+r  +   + ++ ++   + + +++ ++++lDE+  +++ +++al+++++++ kn ++++  
  CCD22761.1  51 LFYGPPGTGKTSTIVALAREIFgkNYSNMVLELNASDDRGIEVVRN-QIKDFASTRqIFSKGFKLIILDEADAMTNaAQNALRRIIEKYtKNTRFCILA 148
                 5679999******999999999544455556666665555443322.34444444344345999*******9987637899******988899988765 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.9e-07   9.6e-05      21     110 ..      19     106 ..       5     180 .. 0.68

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.9e-07
      DUF815  21 evdevklddLvgidkqkealventeqfleglpannvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlkelpklvellrerperfi 110
                 ++++ +ldd+ g    ++++v+ +++fle  +  ++L++G  GtGK s++ al +e+  ++    ++e++ +d + ++ + +++++ +    
  CCD22761.1  19 KYRPESLDDVYG----QTEVVTTVRKFLEEGKLPHLLFYGPPGTGKTSTIVALAREIFGKNysNMVLELNASDDRGIEVVRNQIKDFASTRQ 106
                 444444444443....5678999********************************9988887733445555555555555555554443333 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.3e-06    0.0012      10     116 ..      38     139 ..      30     147 .. 0.75
   2 ?    1.4   0.0      0.43   2.2e+02     140     184 ..     174     216 ..     169     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.3e-06
      AAA_30  10 vealltsgdrv.avltGpAGtGKttalkal.reaweaa.g.grviglAptgkaAkvLaeelgieastiakllkrlkgrarlepg.tllivDEagmvdtk 103
                 v+++l++g++   +  Gp+GtGKt ++ al re++ ++   + + + A+  +  +v+++++   ast + +           +g +l+i DEa  + ++
  CCD22761.1  38 VRKFLEEGKLPhLLFYGPPGTGKTSTIVALaREIFGKNySnMVLELNASDDRGIEVVRNQIKDFASTRQIFS----------KGfKLIILDEADAMTNA 126
                 5566666655313568********998888688888885424444789999999999999998888888777..........3449*******999988 PP

      AAA_30 104 qlaallkaaekag 116
                   +al +++ek+ 
  CCD22761.1 127 AQNALRRIIEKYT 139
                 8888888888754 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.43
      AAA_30 140 lveaagigtaeLtevvRqkeseeraaalalregdaeealealadr 184
                  + +++i  + ++e++++ +++ ++a   l++gd++++l+ l++ 
  CCD22761.1 174 AI-EKRISNVLIHENIKI-SDDAKDALITLSQGDMRRVLNVLQAS 216
                 55.478899999999999.568899999********999988876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     2e-06     0.001      49     148 ..      49     149 ..      32     155 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2e-06
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrve...dLveelkrarrdgklaralkrllkvdllilDdlgllpldqaeaellfeviekryerrsii 144
                  +++ Gp+G+GK+   +al++e   +++s + + ++   d   e+ r++ ++ +++++     ++l+ilD+     + +a+++ l ++iek  +++   
  CCD22761.1  49 HLLFYGPPGTGKTSTIVALAREIFGKNYSNMVLELNasdDRGIEVVRNQIKDFASTRQIFSKGFKLIILDEAD--AMTNAAQNALRRIIEKYTKNTRFC 145
                 57899********************999977666541114444444444444444444444557*******86..566888999999999987777777 PP

   IstB_IS21 145 itsn 148
                 i +n
  CCD22761.1 146 ILAN 149
                 6666 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   8.2e-06    0.0042       1      91 [.      49     137 ..      49     143 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.2e-06
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHS CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlsllee 91 
                 ++l  GppGtgK++ +  la+ + ++++  + l  + + +  +  ++      + +d + +r++     ++++lDE + +  +++n+L +++e+
  CCD22761.1  49 HLLFYGPPGTGKTSTIVALAREIfGKNYSNMVLELNASDDRGIEVVR-----NQIKDFASTRQIFskGFKLIILDEADAMTNAAQNALRRIIEK 137
                 7899*********9999999888899999999988877776444444.....334444444443322557899999999999999999999985 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     3e-06    0.0015       5      93 ..      50     139 ..      48     151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3e-06
      AAA_24   5 iliyGpsgiGKTtlakel.......gpkplfidtekGlks.ldadkfpdieswedfldevvelaaeladyktlviDtideleelclaevirqnekae 93 
                 +l yGp+g+GKT+++  l        ++  ++ ++++ ++ +++ +        +++d++ + +   +++k +++D +d + + + + ++r  ek +
  CCD22761.1  50 LLFYGPPGTGKTSTIVALareifgkNYSNMVLELNASDDRgIEVVRN-------QIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRIIEKYT 139
                 678***********999977777766666666666654332444443.......3566666668999**************9999888877666644 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.8e-06    0.0025      35      72 ..      49      86 ..      27      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4.8e-06
       AAA_7 35 pvllvGptGtGKtviikdllkkldkekylsltinfsaq 72
                ++l++Gp GtGKt++i  l +++  ++y+ ++++++a+
  CCD22761.1 49 HLLFYGPPGTGKTSTIVALAREIFGKNYSNMVLELNAS 86
                799*****************************999986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   7.2e-06    0.0037       3      44 ..      52      92 ..      50     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 7.2e-06
      AAA_18  3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44
                  G+pG+GKt+   +L+++  fg n++ ++ e + ++++  e
  CCD22761.1 52 FYGPPGTGKTSTIVALAREI-FGKNYSNMVLELNASDDRGIE 92
                68**************9995.677777777776665555444 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   3.6e-05     0.018     106     151 ..      96     140 ..      33     148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 106 grlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpq 151
                  ++ d+ st+++  + +++++lDEad + +   ++ ++ri+++  +
  CCD22761.1  96 NQIKDFASTRQIFSKGFKLIILDEADAMTNA-AQNALRRIIEKYTK 140
                 45667778999999****************8.99999999998854 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.6e-05     0.008       5      75 ..      54     124 ..      50     137 .. 0.70
   2 ?   -1.5   0.0       3.3   1.7e+03     114     178 ..     154     221 ..     141     237 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-05
  Viral_helicase1   5 GvpGcGKStlirkllrtsliltvnrptaelltegk....pklpnlsvrtvdsflmalvks.tkgkililDEylllh 75 
                      G pG GK++ i+ l+r+  i+ +n ++ +l   ++     ++ ++    +++f +++    +++k++ilDE+ +++
       CCD22761.1  54 GPPGTGKTSTIVALARE--IFGKNYSNMVLELNASddrgIEVVRN---QIKDFASTRQIFsKGFKLIILDEADAMT 124
                      78***************..77777776666666664333334444...466666666555567********96665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.3
  Viral_helicase1 114 lpsslshrvgrrttyllpsdvaeilsakvgteveversgel..kvetepkgqe..kvlvyltftqalke 178
                      l++ l +r +r + + lp+d +e++ ++v+ + +++ s+      +t ++g +   vl +l++++a++ 
       CCD22761.1 154 LTPALLSRCTRFRFQPLPRDAIEKRISNVLIHENIKISDDAkdALITLSQG-DmrRVLNVLQASKATLD 221
                      444555666666677888888888888877676666666663232333333.33556666666655554 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   0.00035      0.18      11      33 ..      48      70 ..      39      80 .. 0.83
   2 ?    3.1   0.0      0.22   1.1e+02      94     127 ..     102     136 ..      79     148 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00035
      AAA_19 11 kvllvtaGpGtGKTrvlkhival 33
                ++ll  ++pGtGKT ++++  ++
  CCD22761.1 48 PHLLFYGPPGTGKTSTIVALARE 70
                567889***********998765 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.22
      AAA_19  94 aeeekklqeee.llivDEfqdvdelqyrLlkallg 127
                 a++++ + +++ l+i DE+  ++  +++ l+++ +
  CCD22761.1 102 ASTRQIFSKGFkLIILDEADAMTNAAQNALRRIIE 136
                 4556677788889******9999666665666553 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.1e-05     0.011       1      87 [.      49     136 ..      49     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.1e-05
       AAA_3   1 hvllegvPGlaktllvkalakal.dlefkriqftpdllPsdilGtevfeekekefefkkGpvfa...nllladeinrappktqsalleame 87 
                 h+l+ g PG++kt ++ ala+ + + +++   +  +l  sd  G+ev++++ k+f  ++  +f+   +l++ de +  +  +q al  ++e
  CCD22761.1  49 HLLFYGPPGTGKTSTIVALAREIfGKNYSN--MVLELNASDDRGIEVVRNQIKDFASTR-QIFSkgfKLIILDEADAMTNAAQNALRRIIE 136
                 999*****************9872555665..567899*****************8776.566523369999**99999999999977665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0    0.0005      0.26      21      58 ..      38      72 ..      19      90 .. 0.78
   2 ?    1.3   0.0      0.44   2.2e+02     139     161 ..     109     130 ..      77     145 .. 0.78
   3 ?   -2.4   0.0       5.9     3e+03      84     111 ..     173     204 ..     171     234 .. 0.44

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0005
      AAA_25 21 prrwlvkgllpagelallaGapgtGKttlaldlalava 58
                 r+ l +g lp     l++G+pgtGKt   + la ++ 
  CCD22761.1 38 VRKFLEEGKLP---HLLFYGPPGTGKTSTIVALAREIF 72
                45555555555...5799***************99875 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.44
      AAA_25 139 evegvrlvviDplsralggdens 161
                 + +g +l+++D  ++++++  n+
  CCD22761.1 109 S-KGFKLIILDEADAMTNAAQNA 130
                 4.679999999999999998775 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5.9
      AAA_25  84 delrrRlravgeal......rddarllvldlagv 111
                 d +++R++ v+ +       +  a+ ++++l + 
  CCD22761.1 173 DAIEKRISNVLIHEnikisdD--AKDALITLSQG 204
                 566666666663322466322..22222222222 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00019     0.099       4      56 ..      27      82 ..      24     115 .. 0.68
   2 ?    0.1   0.0      0.85   4.4e+02     109     132 ..     114     137 ..     106     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
  Mg_chelatase  4 dvkGqeeakrale.iaaaGg.HnlllvGppGsGKtmlakrl.psllpplseeeale 56
                  dv Gq+e  ++++     G+  +ll++GppG+GKt  + +l  +++ +  ++ +le
    CCD22761.1 27 DVYGQTEVVTTVRkFLEEGKlPHLLFYGPPGTGKTSTIVALaREIFGKNYSNMVLE 82
                  66666665554431334444249***********9765554145666655555555 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.85
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePled 132
                   +++LDE+  +++ + ++LR+ +e+
    CCD22761.1 114 LIILDEADAMTNAAQNALRRIIEK 137
                   578****************99987 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   0.00011     0.059       2      30 ..      51      76 ..      50     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 0.00011
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkklklkk 30
                  ++yGp+g+GK++++  La+++ +k     
    CCD22761.1 51 LFYGPPGTGKTSTIVALAREIFGKN---Y 76
                  79******************99554...3 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012     0.061      36      76 ..      35      74 ..      22     125 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.X CS
       TIP49 36 agvivelikekklaGravLlaGpsgtGktalaiaiskelg.e 76
                ++ + ++++e+kl    +L+ Gp+gtGkt+  +a+++e+  +
  CCD22761.1 35 VTTVRKFLEEGKLP--HLLFYGPPGTGKTSTIVALAREIFgK 74
                45677888888888..89********************9523 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0028       1.4      28      57 ..      40      69 ..      31     110 .. 0.65
   2 ?    2.1   0.0      0.22   1.1e+02     118     142 ..     110     134 ..      95     140 .. 0.79
   3 ?   -3.2   0.0       9.2   4.7e+03      69      93 ..     229     255 ..     214     261 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0028
        TniB 28 eypkrkrmpnlllvGdsnnGKtmivekFar 57
                ++ ++ + p+ll++G++ +GKt+ +   ar
  CCD22761.1 40 KFLEEGKLPHLLFYGPPGTGKTSTIVALAR 69
                55678899**************98755443 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.22
        TniB 118 lkvrvLiiDEihnllagsarkqref 142
                  + +++i+DE + + ++ +++ r++
  CCD22761.1 110 KGFKLIILDEADAMTNAAQNALRRI 134
                 5789**********98888776665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 9.2
        TniB  69 kvpvlv..vqappkpdekrlyaaiLea 93 
                 + +v++    ap  +d k + ++iLe 
  CCD22761.1 229 HADVIYecCGAPRPADLKTILKSILED 255
                 346665224578889999999999975 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00018     0.092       3      23 ..      51      75 ..      49     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00018
      AAA_28  3 vitGgestGKTtlleaLaar....g 23
                 + G+++tGKT+++ aLa++    +
  CCD22761.1 51 LFYGPPGTGKTSTIVALAREifgkN 75
                589***************7655332 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0087       4.5      22      46 ..      50      74 ..      29     100 .. 0.78
   2 ?    4.1   0.0     0.054        28     122     154 ..     114     149 ..     105     160 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0087
                EEEE--TTSSTTHHHHHHHHHHHHT CS
        PhoH 22 vfaiGpaGtGKtylavalavealkk 46
                +   Gp GtGKt   vala e++ k
  CCD22761.1 50 LLFYGPPGTGKTSTIVALAREIFGK 74
                5678*********999999877654 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.054
                 EEEE-SGGG--HH...HHHHHHTTB-TT-EEEEEE- CS
        PhoH 122 fvilDEAQnttke...qmkmfltRlGenskvvvtGd 154
                 ++ilDEA  +t++    ++ ++ +  +n+++ ++ +
  CCD22761.1 114 LIILDEADAMTNAaqnALRRIIEKYTKNTRFCILAN 149
                 79*****98776511145566666677777777665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00052      0.27      14     117 ..      50     209 ..      41     220 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00052
                 EEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................ RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkp.teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................................ 79 
                 + + G+ G+GK++ + +la++    +  ++ l+ + ++++ +e++r++i+ +  + q+f++   +                                  
  CCD22761.1  50 LLFYGPPGTGKTSTIVALAREIFGkNYSNMVLELNASDDRGIEVVRNQIKDFASTRQIFSKG-FK-Liildeadamtnaaqnalrriiekytkntrfci 146
                 5678*************999986633445557777788888888888888888887766654.21.123444677777777778888888888888888 PP

                 ...........................HHHTCHHHHH..HHSTTGGTTCBGESTTSGGS-HHHHHHH CS
                 ...........................xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...........................esdeeiekal..sklglkelkdtvvksspssLSgGqkqrv 117
                                            + +++i+++l  +++++++++++ +     +LS+G  +rv
  CCD22761.1 147 lanyshkltpallsrctrfrfqplprdAIEKRISNVLihENIKISDDAKDAL----ITLSQGDMRRV 209
                 8877777777777777777777777765555555554113444445555555....88888888876 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00022      0.11     161     211 ..      95     146 ..      51     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00022
                 HHHT......TTS-S-S-SEEEES-GGGT--T.TSHHHHHHHH---S-EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
      SNF2_N 161 sreaelqkkrsvlkqvewkrvvlDEghtlkns.tskaaeavskLstsnrwil 211
                 +++ + +++  ++ ++  k ++lDE+  + n  ++ ++ +++k+  + r ++
  CCD22761.1  95 RNQIKDFASTRQIFSKGFKLIILDEADAMTNAaQNALRRIIEKYTKNTRFCI 146
                 44444447888999999***************99***************997 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00026      0.13      12     110 ..      58     147 ..      56     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00026
  Methyltransf_31  12 CGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkileeiervlkpgg 105
                      +G+   + +la       e++G  +s  ++el  +  ++ g++ v+ ++ d+ +  + ++ + f li+ +e+ + +++ +++l++i++  ++++
       CCD22761.1  58 TGKTSTIVALA------REIFGKNYSNMVLELNAS--DDRGIEVVRNQIKDFASTRQIFS-KGFKLIILDEADAMTNAAQNALRRIIEKYTKNT 142
                      44433333344......247777777778877777..689999999999****9775577.8******************************** PP

  Methyltransf_31 106 illie 110
                      +++i 
       CCD22761.1 143 RFCIL 147
                      *9975 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1    0.0005      0.25       3      77 ..      51     149 ..      50     184 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0005
      AAA_33   3 llvGlpGsGKstlaerllkklg......avllssdt........lrrrlfgtdqqskt............dytr.vldrlyqilnelarkalsagrnvi 74 
                 l+ G+pG+GK+  +  l+++        + +l+ ++        +r++++     s++            d ++  ++ + + l+++++k+ +  r +i
  CCD22761.1  51 LFYGPPGTGKTSTIVALAREIFgknysnM-VLELNAsddrgievVRNQIKDF--ASTRqifskgfkliilDEADaMTNAAQNALRRIIEKYTKNTRFCI 146
                 799********999999888766676742.3333333346666644444431..111134555666666644442556678888888888888888888 PP

      AAA_33  75 lda 77 
                 l +
  CCD22761.1 147 LAN 149
                 844 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1    0.0012      0.63       7      55 ..      53     102 ..      49     147 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0012
     DUF2075   7 tGvaGtGKtvvllnllaeleddeeertavylsvNh...plvlvlrealakke 55 
                  G +GtGKt   ++l+ e+    +++++ +l  N    + ++v+r++++  +
  CCD22761.1  53 YGPPGTGKTSTIVALAREI--FGKNYSNMVLELNAsddRGIEVVRNQIKDFA 102
                 799****************..6666655555555411134557777775444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       930  (0.0518713); expected 358.6 (0.02)
Passed bias filter:                      783  (0.0436723); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              35  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 2494.24
//
Query:       CCD22762.1  [L=545]
Description: hypothetical protein NDAI_0A06070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     4e-129  431.5  13.6   4.9e-129  431.3  13.6    1.1  1  Mid1      Stretch-activated Ca2+-permeable channel component
      0.005   17.4   4.3       0.26   11.9   4.3    2.6  1  Fz        Fz domain


Domain annotation for each model (and alignments):
>> Mid1  Stretch-activated Ca2+-permeable channel component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  431.3  13.6  5.4e-133  4.9e-129       2     426 .]     101     538 ..     100     538 .. 0.91

  Alignments for each domain:
  == domain 1  score: 431.3 bits;  conditional E-value: 5.4e-133
        Mid1   2 vyisanicsqpslkaektkeeepqLtlyvstsssnkkpgpekeeseqtveefeeGyvnat.vnase...........dlYiavsapnstsk........ 80 
                 +++s+n+cs+p      ++++  +L++++s++++  +     ++s+ ++e+f++G+++a+ +++++           +lY+ v+  nst++        
  CCD22762.1 101 MFLSGNLCSTP------NNTDGIELRVHYSFDENLMT-----NTSNGQYEAFKDGFMEALaISPIQtsasnttskyqNLYVVVQLFNSTTNepltdefl 188
                 79*********......78899**********99855.....34455559*********999999999******************************* PP

        Mid1  81 ...asgswnyelavStddlvhqyddrsnlllvDsdsnsALlvtgnlteseadaeskkelvkkeapYelfasseedssklkg.lerSlcalkngaqlass 175
                    +++ w+y+l++S++dlv+q+d rs+l ++D+d+nsALl+tgn+t++++   +++  +  ++ Y+l+++s+eds k++  l+ Slca+kng++l+ss
  CCD22762.1 189 dpsQKDVWDYRLSISENDLVFQWDVRSWLDVLDTDHNSALLTTGNVTADAQVFYNYS--TYDTSLYDLYVYSYEDSLKFEDgLSLSLCAIKNGPYLVSS 285
                 997677*****************************************6554444443..345899************99877****************9 PP

        Mid1 176 kn...nseevkl......slttrglgnkvkqqfyvkgLnasttYlailvkkgskknstasgggkvfkavefetkaddnCqliydLdFCdevaYavPsns 265
                  +    s++ +       +  ++g gn v + fy++gLn+sttY+ail+kk+ k+ + ++ gg++f +++f+t+++++C+liydL+FCd vaY+vP++s
  CCD22762.1 286 VDsgrVSSSLEEeglviqKSIREGGGNGVSEYFYITGLNSSTTYAAILTKKIGKSGNLSDVGGVLFAKQYFTTRDTNTCSLIYDLHFCDGVAYSVPTSS 384
                 9966533333314445554445566999************************99999999*************************************** PP

        Mid1 266 klfknktelaklYddyakslyanFskslqqiaCeaesdarYSllrtCddCaeaYknWLCaVtiPRCedfsseakylqernvgqaflngaaknssRnsli 364
                  +++nkt +a++Yd++a++l+anFsk+lq i+C+aesdarYS+lrtCddC+++Y +W+CaV+iPRC+++ss+  y++ rn++          ++Rn++i
  CCD22762.1 385 FAYDNKTLIAETYDNIAEALFANFSKALQLIPCDAESDARYSPLRTCDDCSKSYGDWVCAVSIPRCTTTSST--YYMSRNKT----------KNRNKYI 471
                 ************************************************************************..********..........9****** PP

        Mid1 365 devikP.gpYkevlPCedlCyklvrsCpaslgFsCPkkks...llelsYglrsedge.itCnylGav 426
                 d +++P ++Y+e+lPC+d+C+++vr+Cp+++gF+CP+++    ll  sY+++++ ++  tCn++G+v
  CCD22762.1 472 DIYVQPvSDYYEILPCIDMCHAIVRDCPSDFGFACPNPQYtneLLYYSYNYYKKGATlDTCNFIGNV 538
                 *************************************9987778899999998886679******96 PP

>> Fz  Fz domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   4.3   2.9e-05      0.26       1      90 [.     364     502 ..     364     516 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.9e-05
                 -EE-.E...ETT-S-SEE-GGGS.S-SSHHHHHHH.........................HHHHHGGGG-.HHHTTSTTHHHHHHS---E......... CS
          Fz   1 Cepi.elelCkaigynstslpnllgheteeevaee.........................leefsllvkl.eCspalklflCsllfpkCe......... 63 
                 C+ i +l++C ++ y+  +  + ++ ++++ +ae+                            +s+l +  +Cs+ +  ++C++ +p+C+         
  CCD22762.1 364 CSLIyDLHFCDGVAYSVPT--SSFAYDNKTLIAETydniaealfanfskalqlipcdaesDARYSPLRTCdDCSKSYGDWVCAVSIPRCTttsstyyms 460
                 6666678888888875332..22333333333333333344455555555555554444344457777769******************9777777776 PP

                 ...............ESSS-EEEE---HHHHHHHHTT-GGGS CS
          Fz  64 ...............psgeeeaplppCrslCeavrdsCekvl 90 
                                + +++   ++pC ++C+a+ ++C +++
  CCD22762.1 461 rnktknrnkyidiyvQPVSDYYEILPCIDMCHAIVRDCPSDF 502
                 666666655555555334444455666888888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3847.39
//
Query:       CCD22763.1  [L=435]
Description: hypothetical protein NDAI_0A06080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-41  139.7   1.0    2.4e-39  135.1   0.0    2.8  3  TruB_N       TruB family pseudouridylate synthase (N terminal
    0.00032   20.8   0.0     0.0023   18.0   0.0    2.4  2  TruB_C_2     tRNA pseudouridylate synthase B C-terminal domai
  ------ inclusion threshold ------
       0.61   10.6   4.3        1.1    9.7   1.1    2.7  3  KinB_sensor  Sensor domain of alginate biosynthesis sensor pr


Domain annotation for each model (and alignments):
>> TruB_N  TruB family pseudouridylate synthase (N terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.0     4e-43   2.4e-39       3     130 ..      75     205 ..      70     216 .. 0.90
   2 ?    1.8   0.0     0.048   2.9e+02     131     149 .]     280     298 ..     263     298 .. 0.84
   3 ?   -1.4   0.2      0.45   2.7e+03      57      78 ..     374     397 ..     345     427 .. 0.55

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 4e-43
                 HTT-S-EEESS---TT-EEEEEEEEGGGGG.GHHHCTTS-EEEEEEEEETEEETTSBTTS-EEE-.--TT--HHHHHHHHHHC-EEE------------ CS
      TruB_N   3 llkakkvGhtGtLDplatGvLvvavgeaTk.lleylleadKeYeatirlgaetdteDaegeileeekveklteekleevlkkftGeieqvppmySAvkv 100
                 +++  k+Gh+GtLDpla+GvL++++g++Tk l++yl+ + K Ye ++ +g++t++ D egeil+++++++lt e+le++ +kf G+++q+pp+y+A+k+
  CCD22763.1  75 KVSKVKMGHGGTLDPLASGVLIIGIGTGTKkLANYLSGTVKVYESEALFGVSTTSGDVEGEILSQNSTKHLTMEDLETIKDKFVGSLKQTPPIYAALKM 173
                 344569***********************73667777888*************************99******************************** PP

                 ----------------..-----EEEEEEEEE CS
      TruB_N 101 nGkrlyelaregeeve..rkkrkvtiyelell 130
                 nGk+l+e+areg+ +   +++r+vt+y+le++
  CCD22763.1 174 NGKPLHEYAREGKPLPraIEPRQVTVYDLEIF 205
                 ************998733678********985 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.048
                 EEEEEEEEEEEEESTTTTH CS
      TruB_N 131 eveepevelevecskGtYi 149
                 +++ p +++++++s+GtYi
  CCD22763.1 280 NYRAPLLHFSAKVSSGTYI 298
                 5677899***********8 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.45
                 SBTTS-EEE-...--TT--HHHHH CS
      TruB_N  57 eDaegeilee..ekveklteekle 78 
                 +D+  +  e+  e++ek +++++e
  CCD22763.1 374 HDSALDLAEKhkEQIEKEQKQEVE 397
                 333333332211222222223333 PP

>> TruB_C_2  tRNA pseudouridylate synthase B C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.39   2.3e+03      31      41 ..     142     152 ..     135     163 .. 0.76
   2 !   18.0   0.0   3.8e-07    0.0023       1      54 [.     299     353 ..     299     357 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.39
                 -..B-HHHHHH CS
    TruB_C_2  31 edmvtledLed 41 
                 ++ +t+edLe 
  CCD22763.1 142 TKHLTMEDLET 152
                 55699***998 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 3.8e-07
                 HHHHHHHHHHTTS-EEEEEEEEEEETTE..GG-..B-HHHHHHHHHHHHT--H.....HHH CS
    TruB_C_2   1 RtLcdDiGeaLgcgAhveeLRRtrvgpf..deedmvtledLedavllykedee.....Ldr 54 
                 R+L+ DiG+a+    ++ +L R++ ++     ++++++ed+++       de      L+ 
  CCD22763.1 299 RSLISDIGKAMRSSSYMVKLIRIQQQDWslMSNNVFKMEDFTE--R----DEAvwsevLRT 353
                 9**************************777788899***9998..5....33343333555 PP

>> KinB_sensor  Sensor domain of alginate biosynthesis sensor protein KinB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.52   3.1e+03      33      53 ..     143     163 ..     134     165 .. 0.78
   2 ?   -0.3   0.0      0.23   1.4e+03      34      97 ..     268     334 ..     265     341 .. 0.61
   3 ?    9.7   1.1   0.00019       1.1      33      93 ..     360     422 ..     352     428 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.52
                  SS--HHHHHHHHHHHHHHHHH CS
  KinB_sensor  33 edpdseaLeesrqkfrelLee 53 
                  +   +e Le++++kf   L++
   CCD22763.1 143 KHLTMEDLETIKDKFVGSLKQ 163
                  456679999999999998876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.23
                  S--HHHHHHHHHHHHH.HHHHHHHH--SHHHHHHHHHHHHHHHHH..HHHH..HHHHHS-SSSSHHH CS
  KinB_sensor  34 dpdseaLeesrqkfre.lLeeglaskvdeaerqaleqiasayrqflqales..patsrrelldnddl 97 
                  d +++++ee ++++r  lL  + + +  +  r+ ++ i +a r+ + +++    +++ ++l+ n+ +
   CCD22763.1 268 DEERKEIEEQKDNYRApLLHFSAKVSSGTYIRSLISDIGKAMRSSSYMVKLirIQQQDWSLMSNNVF 334
                  4455667777777775244555555666666777777777777665555543356667777777655 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00019
                  SS--HHHHHHHHHHHHHHHHHHHHH..--SHHHHHHHHHHHHHHHHH..HHHHHHHHHS-SSS CS
  KinB_sensor  33 edpdseaLeesrqkfrelLeeglas..kvdeaerqaleqiasayrqflqalespatsrrelld 93 
                  e++ +++ e+++++  ++L+ + ++  + +++++q +e++ ++ ++ ++++e+p++++r+l +
   CCD22763.1 360 ETNIPQEFEKIQKEHDSALDLAEKHkeQIEKEQKQEVEGAIDKLASVVTTTEEPKSVKRSLEE 422
                  5667899***********98776651156788999***********************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1671  (0.093201); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3429.67
//
Query:       CCD22764.1  [L=642]
Description: hypothetical protein NDAI_0A06090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-43  148.1   4.6    6.4e-31  107.7   0.1    2.5  2  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.1   3.6e-35   6.4e-31       2     159 ..     220     383 ..     219     391 .. 0.81
   2 !   41.0   1.4   9.3e-15   1.7e-10     164     215 .]     422     473 ..     408     473 .. 0.91

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 3.6e-35
  RabGAP-TBC   2 elRgevWklllgyep...evkrlkksekkqeksekeksklekseeskelsqIkkDvprtfp.....es..esfknkqgqnqLeriLkaysiynpevgYc 90 
                 e Rg++W+++++ ++   ++k l+ +   + +++   s++++++  ++l  I++D++rtfp     ++  ++  ++++ ++L+r+L  +s+ynp++gYc
  CCD22764.1 220 EWRGNAWWYFARGQEklnKHKGLYDKLLVKVDKM--TSQNKNDKTYPDLDIIERDLNRTFPdnihfQKevFQNGEPPMIKSLRRVLVSFSLYNPKIGYC 316
                 68*********99997744444443333333333..2333333335669************8775522345555569********************** PP

  RabGAP-TBC  91 qGmndivaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkee 159
                 q mn+i+++ll ++ldee aFw++v +  + +l+ ++  +l+g++ ++ vl  ++k+++p++++++  +
  CCD22764.1 317 QSMNFIAGLLL-LFLDEERAFWMLVIIT-SRYLPGVHDINLEGVNIDQGVLMLCVKEYLPEIWTYIYPN 383
                 ***********.****************.99********************************998655 PP

  == domain 2  score: 41.0 bits;  conditional E-value: 9.3e-15
  RabGAP-TBC 164 elfaikwfltlflrefpletvlrlwD.lllegekfvllrvalailklleeell 215
                 +l +++wf+ +f+ ++p+et+lr+wD +++e+++f l++ +l+ilkl+e +ll
  CCD22764.1 422 TLCTASWFMSCFIGVLPIETTLRIWDcMFYEESHF-LFKASLSILKLSEHDLL 473
                 67799*********************888888888.***********998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 4130.70
//
Query:       CCD22765.1  [L=535]
Description: hypothetical protein NDAI_0A06100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-86  288.7  16.2    6.4e-86  288.3  16.2    1.1  1  PalH           PalH/RIM21
      0.002   18.5   0.8     0.0096   16.2   0.3    2.3  2  Cloacin_immun  Cloacin immunity protein
  ------ inclusion threshold ------
        0.6    9.7   5.1         12    5.5   0.0    2.4  2  Wzy_C          O-Antigen ligase


Domain annotation for each model (and alignments):
>> PalH  PalH/RIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.3  16.2   1.1e-89   6.4e-86       1     329 [.      19     364 ..      19     365 .. 0.96

  Alignments for each domain:
  == domain 1  score: 288.3 bits;  conditional E-value: 1.1e-89
        PalH   1 sCsiyiLtsGfllllnskslvtlanaavftpkCsnss.............fskllqvledwkkntslstksdnkdsFyaSiipilfslsaicVitwmLv 86 
                 sC+   L+ G+l+  n +++ ++++++ f+++C+ +s             +++l++v  dwkk+++ ++    ++sF++Si+ ++ s++a+ Vit++L+
  CCD22765.1  19 SCNWLDLGPGLLVNDNLDQKARYIASIKFKSYCDGGSpvymasrltglskYRYLDSVYLDWKKYITANN--SIGGSFQYSIYSVVISFTANLVITIFLT 115
                 6************666555579***********9999******************************99..99************************** PP

        PalH  87 lllfl....lprknhkrplllklavllvaivltialakttkevfeeqyskgyqdaselekeivsstelkvlelisnlllnlaqvqivirlfsrqkekri 181
                 +l+f+    +p+ + +  +llk+a+l+++++l+i++++++++++ e++ +g++++++ +++++++ ++ vl++is+++++l+qv ivirlf+r +ekri
  CCD22765.1 116 VLVFInirdKPYVKSS--RLLKFASLIASLNLIIFVTRSLQKLATEHKTHGTVSTHYAMDLFTDDIAFIVLDFISTCIFQLCQVSIVIRLFERIQEKRI 212
                 *****88777777777..********************************************************************************* PP

        PalH 182 iilvGlaliildtilsalllf..sk.....kfldalpalsylfelalvtlyaalviyYliskrkyilspkrmketilllilnllvillpvvffildisn 273
                 ++++G++l+i+d++l++++++  ++     k +++lp+++ylf+++++t+ya++vi Y+i+kr+ ++ +    +++ll +l+l++++  +vffi+dis+
  CCD22765.1 213 VFICGVCLTIVDNVLWVIPQLveASgggyvKRWEILPPFVYLFRISIATSYACVVISYIIRKRRQSYRS---FQMVLLSFLTLITVIASPVFFIIDISD 308
                 *********************752278899**************************************9...*************************** PP

        PalH 274 advaewkeliiwvlkllitvivWewierieklerkeekegvLGRkisnddklevdp 329
                 ++++e++e++++++++ +tvivWe+++r++ +er+ ++++vLGR+i++d++ ++++
  CCD22765.1 309 VWISELSEIFSTTCYIGATVIVWEYLDRLSVIERNDRAQSVLGRPIFEDEQHDYNF 364
                 *****************************************************997 PP

>> Cloacin_immun  Cloacin immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.47   2.8e+03      48      63 ..     304     319 ..     302     324 .. 0.85
   2 !   16.2   0.3   1.6e-06    0.0096      20      72 ..     391     444 ..     380     452 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.47
  Cloacin_immun  48 fdvkkeWvstlqkhfk 63 
                     d+ + W+s l + f 
     CCD22765.1 304 IDISDVWISELSEIFS 319
                    58999******99986 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.6e-06
  Cloacin_immun  20 eyskDlGdD.gslieklglplddninnGafdvkkeWvstlqkhfkhkieidkyd 72 
                    +  + lG+  +s+ ++++ p d+ in+  fd k+e+ ++ q+h+ + i+   y+
     CCD22765.1 391 DLEEGLGNQaDSMDNNVIHPEDESINQVRFDNKREFNEVAQEHLSNAIDKVLYF 444
                    356678975489999*********************************976554 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   2.5    0.0058        34       7      77 ..      97     167 ..      92     198 .. 0.78
   2 ?    5.5   0.0     0.002        12      17      59 ..     257     380 ..     251     483 .. 0.55

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0058
       Wzy_C   7 llalflstsRsgiigllvalivlliifykrripfllllgilvgvilliilfvlstnletlknitkafgkld 77 
                 +  +++s +   +i++++ ++v++ i+ k+ ++  +ll ++ +++ l + +++ ++l++l+ + k +g+++
  CCD22765.1  97 IYSVVISFTANLVITIFLTVLVFINIRDKPYVKSSRLLKFASLIASLNLIIFVTRSLQKLATEHKTHGTVS 167
                 56677777777888999999999999999999666666666667777777777788999888887777665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.002
       Wzy_C  17 sgiigllvalivlliifykrripfllllgilvgvilliilfv......................................................... 58 
                  +i +  + +++  ii+++r   ++ + ++l+  ++li++++                                                         
  CCD22765.1 257 ISIATSYACVVISYIIRKRRQS-YRSFQMVLLSFLTLITVIAspvffiidisdvwiselseifsttcyigatvivweyldrlsvierndraqsvlgrpi 354
                 5556665566666666666666.6666666666666666666555666888888877777777777777777777776666666666666666644444 PP

       Wzy_C  59 .........................l 59 
                                           
  CCD22765.1 355 fedeqhdynfakyalkvqkalirsdS 380
                 44444444444444444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1741  (0.0971052); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3926.28
//
Query:       CCD22766.1  [L=490]
Description: hypothetical protein NDAI_0A06110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-34  117.0   2.6    9.2e-34  116.9   0.0    2.3  3  Pet20     Mitochondrial protein Pet20


Domain annotation for each model (and alignments):
>> Pet20  Mitochondrial protein Pet20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.84   1.5e+04      37      58 ..      30      51 ..      18      62 .. 0.59
   2 !  116.9   0.0   5.2e-38   9.2e-34       1     128 [.      66     210 ..      66     211 .. 0.95
   3 ?   -1.2   0.2      0.17   3.1e+03      47      75 ..     258     277 ..     225     304 .. 0.55

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.84
       Pet20 37 llveankkkekeeklneqevle 58
                l++++ k+ +ke++++eq++l+
  CCD22766.1 30 LFKKSVKSIRKETNSKEQSILK 51
                4444444444555556665554 PP

  == domain 2  score: 116.9 bits;  conditional E-value: 5.2e-38
       Pet20   1 slPkVptTdyleskelttdiLfaGYrPl.....................llpvkenillveankkkekeeklneqevleeeekeieelakesgtggiks 78 
                 ++P+V++Td+++ +e++t++LfaGY+Pl                     llp+ ++++l+ an+++  +e+++ +++l++ +++i+++ +e + ++i+s
  CCD22766.1  66 MVPRVGETDHIPVNEVQTEGLFAGYKPLflgnssistqnrfydnelhlkLLPQLSDLKLLGANAENFITESSSLHDTLSQ-KNNIQDIIEELKNATIHS 163
                 59**************************************************************9998888888888666.6899999999******** PP

       Pet20  79 ggvngtwkk..kpviPskllpywsasisgmeynde.fkkvPkkvvkklkPfkl 128
                 +++n++ +   kp+iP      w+asisgm+y+d+ fk+vP++vv+klkPfk+
  CCD22766.1 164 QDINSDGEGitKPTIP------WDASISGMLYKDRpFKAVPNSVVTKLKPFKM 210
                 *****999999*****......******************************8 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.17
       Pet20  47 keeklneqevleeeekeieelakesgtgg 75 
                 +++k ++++  ++++ ++           
  CCD22766.1 258 QKRKMRNSKSFQKKSIKTA---------Q 277
                 2222222222222222222.........2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1180  (0.0658152); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3400.46
//
Query:       CCD22767.1  [L=1643]
Description: hypothetical protein NDAI_0A06120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-52  178.4   0.9      1e-52  178.4   0.9    3.2  2  DCB       Dimerisation and cyclophilin-binding domain of Mon2
    1.8e-36  125.4   7.1    1.8e-36  125.4   7.1    5.1  6  Sec7_N    Guanine nucleotide exchange factor in Golgi transpo
    5.5e-17   61.2   0.2    2.8e-11   42.4   0.0    2.5  2  Mon2_C    C-terminal region of Mon2 protein
  ------ inclusion threshold ------
      0.052   13.4   0.1       0.46   10.4   0.1    2.8  1  DUF1981   Domain of unknown function (DUF1981)


Domain annotation for each model (and alignments):
>> DCB  Dimerisation and cyclophilin-binding domain of Mon2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.4   0.9   2.3e-56     1e-52       3     177 ..       6     177 ..       4     178 .. 0.98
   2 ?    0.2   0.3      0.11     5e+02      69     113 ..     290     336 ..     217     386 .. 0.81

  Alignments for each domain:
  == domain 1  score: 178.4 bits;  conditional E-value: 2.3e-56
         DCB   3 askllealqsdlkalsseskrkhskvkeasekgilkLktikssseeeeqslaeaseeilkPlllacetknpkivqiaLgslqrLisheviseeaiskii 101
                 +++++++l+++l++lsseskr++s++k+as+k+i +Lkti++ +     +l+++ +++++Pl+lac+++n+k+++ia+++lq L s+  i+e++i++++
  CCD22767.1   6 FTSFRKQLDQELHSLSSESKRRNSTIKHASDKSIDILKTIQNIE-----ELVRH-PDFVTPLVLACSSRNAKLTSIAMQCLQGLASVPSIPESRIPEVL 98 
                 67899**************************************9.....*****.******************************************** PP

         DCB 102 etlwkllelgveielkvLqtllllvttss.vvhgdtlakalvlCfrL..hfskdnvvqntAaAtlrQlvsvvFeRvvae 177
                 + ++++++l++ei+lkvLq+++++++t++ ++ g +++k+l++C++L   ++k++vv  tA+Atl+Ql++ vFeRv++e
  CCD22767.1  99 DGFIEATQLAMEIQLKVLQIVPIFFKTYAkYIVGPQCKKLLQCCSSLlqLPNKAPVVFGTASATLQQLIDEVFERVSYE 177
                 ***********************************************87789999*********************987 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.11
         DCB  69 etknpkivqiaLgslqrLishevis..eeaiskiietlwkllelgve 113
                 ++k+   +  +  ++q Li+ +++s  e +++ ii+ l++ ++l+++
  CCD22767.1 290 SSKHFSTIFRSSRCIQLLIKKDYLSllELELEVIISLLIHGISLESN 336
                 56666666677789*********997777799999999999888776 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.5   6.7e+03      36      96 ..     108     170 ..      96     178 .. 0.59
   2 !  125.4   7.1   4.1e-40   1.8e-36       1     158 []     206     375 ..     206     375 .. 0.92
   3 ?   -2.5   0.1      0.94   4.2e+03      58      94 ..     502     522 ..     469     559 .. 0.57
   4 ?   -0.6   0.3      0.24   1.1e+03       7     112 ..     787     883 ..     762     897 .. 0.59
   5 ?   -1.4   0.0      0.45     2e+03      54     115 ..    1019    1079 ..    1008    1098 .. 0.81
   6 ?    2.6   0.0     0.026   1.1e+02      68     103 ..    1346    1393 ..    1281    1423 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.5
      Sec7_N  36 sLeLlesvlsnhgdvfrkhpellqllkqklcplLlknls.....espsfpvferslrivllLlkkf 96 
                 ++e+   vl+  + +f   +++ + +    c+ Ll+++s     +++++ vf  +  ++ +L+ ++
  CCD22767.1 108 AMEIQLKVLQIVPIFF---KTYAKYIVGPQCKKLLQCCSsllqlPNKAPVVFGTASATLQQLIDEV 170
                 5555555555555555...33344444444666666666666666667777777777777776665 PP

  == domain 2  score: 125.4 bits;  conditional E-value: 4.1e-40
      Sec7_N   1 aakDaflvfrdLcklinsaks.......k...pkflslaersktfsLeLlesvlsnhgdvfrkhpellqllkqklcplLlknlsespsfpvferslriv 89 
                 +++Da ++++dLc+l++s+ s       +    ++l+++ ++  ++Le+lesvl+n++++f + p+l+++l++k +plLl+++s+s++f+++ rs r++
  CCD22767.1 206 YHYDANRLLNDLCSLVESSTSsssststQdktDQLLDIKDIQTDYGLEILESVLKNSKKLFLTYPDLQFILRTKTVPLLLRYISSSKHFSTIFRSSRCI 304
                 579*************86666777666515668888*************************************************************** PP

      Sec7_N  90 llLlk.kfrseLktEievflsllilil.lesdsslwqrvlaLeilrrlcsdpqllvelylnYDcdeeaknv 158
                  lL+k +++s L+ E+ev++slli+ + les+ s wqr+l Lei+++l++d++++++l+ +YD  +++k++
  CCD22767.1 305 QLLIKkDYLSLLELELEVIISLLIHGIsLESNISPWQRILSLEIFKELSQDFEMIRSLFITYDLFPDRKHI 375
                 ****967******************9824669999*****************************9999876 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.94
      Sec7_N  58 lqllkqklcplLlknlsespsfpvferslrivllLlk 94 
                  ++l ++++++L+                r +  L +
  CCD22767.1 502 SSMLDSHIFHSLV----------------RAFQKLAH 522
                 2333444444444................44444444 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.24
      Sec7_N   7 lvfrdLcklinsakskpkflslaersktfsLeLlesvlsnhgdvfrkhpellqllkqklcplLlknlsespsfpvferslrivllLlkkfrseLktEie 105
                 +vf d++k i+ ++   +    ++ ++     +le++++n+     ++ + l++ k+++ +  ++   ++  f+    +l+++  +l++f + L++  +
  CCD22767.1 787 RVFTDIIKNIA-NE-VGN--MDDQETRASKFSILEQLFTNSLMKTIESIQKLDVTKNEIYDGTIRTE-SEIIFQ----ILSTLKEILNEFGDLLTQSWS 876
                 45666666555.44.222..23444555555556666665553333444445555665555555555.333333....344555556666666666666 PP

      Sec7_N 106 vflslli 112
                 ++++ ++
  CCD22767.1 877 TIFNIIN 883
                 6666665 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 0.45
      Sec7_N   54 hpellqllkqklcplLlknlsespsfpvferslrivllLlkkfrseLktEievflsllilil 115 
                   pe+ + l  +l+++L+ +  + +  +v   s+++++ ++ ++ s + t   +f+++l+ +l
  CCD22767.1 1019 GPEMYNGLWLYLLKSLIECT-KDKRIEVKNGSIQTFFRIVDSHGSCFPTWDLIFIEVLNPFL 1079
                  56666667779999999999.9999999999*******999999999888888888777666 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.026
      Sec7_N   68 lLlknls............espsfpvferslrivllLlkkfrseLktE 103 
                   +++nls            +s++ p+ ++s r++  L++k++ ++k+ 
  CCD22767.1 1346 RIVRNLSdviqrksfinlgKSENIPLWVISSRCFRKLVEKLLVSFKKA 1393
                  4455555555555556666999*******************9999975 PP

>> Mon2_C  C-terminal region of Mon2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   6.2e-15   2.8e-11       2     136 ..     932    1081 ..     931    1096 .. 0.85
   2 !   16.2   0.0   5.2e-07    0.0023     685     763 ..    1542    1620 ..    1533    1641 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 6.2e-15
      Mon2_C    2 dfltvmpwrclqlvvdvaakfglqtqelnisltaigllwnisdyffq...............keeklqskqleekavlpef.patvklpq.fdklwl 81  
                  dfl  +p   ++ vvd+  ++ +q++ lnis+++i  +w + dy+                 ++ ++ + +l++  +      ++ k p+ ++ lwl
  CCD22767.1  932 DFLQSLPLGVIKYVVDTLVNYATQDKILNISFSSISQFWLVGDYLRLkdgdivkfddskeskDRLAIFKGKLQDNQLTQIIsSSASKGPEmYNGLWL 1028
                  9*******************************************998899******99886433355677788887774431445677863799*** PP

      Mon2_C   82 clyaklgelcvdlrpavrksagqtlfstisahgsllnpstwqalvwkvlfnlldr 136 
                   l   l e   d r  v+  + qt+f  + +hgs +  +tw+ +  +vl ++l +
  CCD22767.1 1029 YLLKSLIECTKDKRIEVKNGSIQTFFRIVDSHGSCF--PTWDLIFIEVLNPFLKE 1081
                  **********************************86..9**********999853 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 5.2e-07
      Mon2_C  685 lsvllkrsqevlkryiederlsgkcplprfrlseiifvlkavatlvvslkkaqaekvdknawdqlialyptlvecitts 763 
                  +  l+ r   vl+r+i de l  k p+p++r  e++  l  +  +++ l   ++e  ++++ ++l  lyp +++ i +s
  CCD22767.1 1542 IPFLVVRISLVLRRFICDEFLMCKAPIPKHRKIELTTFLNGLHKIMQFLLEENPEYGEEETLKELKVLYPLILKTIPVS 1620
                  5568899999*************************************************************99887665 PP

>> DUF1981  Domain of unknown function (DUF1981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1    0.0001      0.46      32      65 ..     851     884 ..     840     895 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0001
     DUF1981  32 eirelvlecveqliqsraeniksGWktifgvlta 65 
                 ei   +l+ ++++++  ++ +++ W tif++++a
  CCD22767.1 851 EIIFQILSTLKEILNEFGDLLTQSWSTIFNIINA 884
                 566679**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.49
# Mc/sec: 10115.43
//
Query:       CCD22768.1  [L=819]
Description: hypothetical protein NDAI_0A06130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-64  217.8   0.3    4.5e-64  216.4   0.3    1.7  1  Pkinase         Protein kinase domain
    1.6e-50  171.9   0.0    2.7e-50  171.0   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
    6.9e-24   84.0   0.2    2.1e-23   82.4   0.2    1.9  1  PBD             P21-Rho-binding domain
    1.8e-12   47.7   0.7    4.5e-12   46.4   0.7    1.7  1  PH              PH domain
    2.1e-06   27.3   0.0    3.8e-06   26.4   0.0    1.4  1  Kinase-like     Kinase-like
    1.1e-05   24.4   0.0    1.1e-05   24.4   0.0    1.9  2  Pkinase_fungal  Fungal protein kinase
    2.3e-05   24.7   1.5    2.3e-05   24.7   1.5    2.1  2  PH_11           Pleckstrin homology domain
  ------ inclusion threshold ------
      0.039   13.9   0.2        0.1   12.5   0.2    1.6  2  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.4   0.3     2e-67   4.5e-64       2     264 .]     530     802 ..     529     802 .. 0.89

  Alignments for each domain:
  == domain 1  score: 216.4 bits;  conditional E-value: 2e-67
                 EEEEEEEEESSEEEEEEEETT.......T......TEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHH CS
     Pkinase   2 ekleklGeGsfGkVykaveke.......t......gkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggela 86 
                 + +ek G+G++G+Vy a++ +       +      g++vA+K++  +k+  k+   +++Ei ++k ++h+niv+++e++ + +d+l++v+e++egg+l+
  CCD22768.1 530 QMIEKAGQGASGSVYLAKRINippaefeEseipgiGDKVAIKQMILSKQPRKEL--IVNEILVMKDSHHKNIVNFLEAYLKtEDDLWVVMEFMEGGSLT 626
                 66788999999999999876422222221233333799*********9999776..********************9986549**************** PP

                 HHHH.......HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHH CS
     Pkinase  87 dlle.......rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskk 177
                 d++e        ++ l+e+++  i++++++gl++lH+k+iiHrD+K++N+L+d +g +KitDFG++++l+ + +   ++vgt++++APEv+k++ey++k
  CCD22768.1 627 DIIEnspvddtSHSPLTESQIAYIVRETCQGLKFLHDKHIIHRDIKSDNVLLDMNGRVKITDFGFCAKLTDQRSkRATMVGTPYWMAPEVVKQREYDEK 725
                 ********9977788**************************************************999988776699********************** PP

                 HHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 178 vDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 vDvWslG++ +e+l  +pp+ +           d l++++ i ++ + kl++++++s e+k++l+ +l++d + R + eell+h ++
  CCD22768.1 726 VDVWSLGIMTIEMLESEPPYLN----------EDPLKALYLIATNGTPKLKHPEKLSLEIKRFLSVCLCVDVRYRASTEELLHHGFF 802
                 *********************3..........3344456677777899************************************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.0   0.0   1.2e-53   2.7e-50       2     257 ..     530     798 ..     529     799 .. 0.90

  Alignments for each domain:
  == domain 1  score: 171.0 bits;  conditional E-value: 1.2e-53
                  EEEEEEEEESSEEEEEEEEET.........TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkg.........ekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLl 89 
                  ++ +k G+Ga G+V+ ++  +         e      kVa+K++  +++ + ke +++e+ +mk+ +h+niv++l +++  e+ l++v+e+++gG+L 
   CCD22768.1 530 QMIEKAGQGASGSVYLAKRINippaefeesEIPGIGDKVAIKQMILSKQPR-KELIVNEILVMKDSHHKNIVNFLEAYLkTEDDLWVVMEFMEGGSLT 626
                  678899***********999999997754444455679******6655555.89999*********************956677************** PP

                  HHHHHT.....CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEE CS
  Pkinase_Tyr  90 kfLrkk.....ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkf 182
                  + ++++     ++++lt +++  ++ + ++G+++L++k+++Hrd+ + NvLl+ n  vki+DfG + ++  +d+ +k+ +      WmapE++k++++
   CCD22768.1 627 DIIENSpvddtSHSPLTESQIAYIVRETCQGLKFLHDKHIIHRDIKSDNVLLDMNGRVKITDFGFCAKL--TDQRSKRATMVGTPYWMAPEVVKQREY 722
                  *****999999999*******************************************************..666677777788889************ PP

                  EHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH..HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 183 tsksDvWsfGvllwEiftlgespypglkneevlekl..kegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                   +k DvWs G++++E+++ +e py + ++ ++l  +  +   +l++pek + e++++++ c+  d + R++ +el++
   CCD22768.1 723 DEKVDVWSLGIMTIEMLE-SEPPYLNEDPLKALYLIatNGTPKLKHPEKLSLEIKRFLSVCLCVDVRYRASTEELLH 798
                  *****************9.9*******9998888885334457***************************9999875 PP

>> PBD  P21-Rho-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.2   9.6e-27   2.1e-23       2      59 .]     187     244 ..     186     244 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.4 bits;  conditional E-value: 9.6e-27
                 B---EEEEEEEEEEEETTTTEEES--CCHCCCHHHT.TTSXXXBEXXXXXXXXXXXXX CS
         PBD   2 IStPtnfkHtvHVGwdgdsgnftglPpewkkllkssgItedelkenpkavlsvdkfrs 59 
                 +S+Ptnf+H+vHVG+d+++g f+g+P++w+kllk+s It +++++n+ av++v++f++
  CCD22768.1 187 VSSPTNFTHKVHVGFDPETGSFVGMPTNWEKLLKHSRITGEDWNNNSAAVIQVLQFYQ 244
                 9*******************************************************96 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.7     2e-15   4.5e-12       3     101 ..      70     178 ..      68     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 2e-15
                 EEEEEE.EETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEE...............EESTSSSTEEEEE CS
          PH   3 keGwLl.kkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfel...............riverngsrtyll 85 
                 k Gw++ k+++  ++ w+kr+++L+ds l++yknd  ++  ep   isl+n++ v++    +  + +cfe+               + + +++++++++
  CCD22768.1  70 KTGWVSyKDDGILSFLWQKRYLILNDSYLSLYKND--KSTDEPILQISLTNIVAVSR----NQIKQNCFEIvrssdrnsysssssnVSSSSDSKKSIYI 162
                 679966255555555********************..99999*************65....9*********99999999888887644444446***** PP

                 EESSHHHHHHHHHHHH CS
          PH  86 qasseeerkeWikaiq 101
                 ++++e e+++W+ ai 
  CCD22768.1 163 ATKTEVELHSWLDAIF 178
                 **************95 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.7e-09   3.8e-06     106     281 ..     595     779 ..     568     782 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.7e-09
  Kinase-like 106 siywvvnallllpaasvdl.........eilnkvlqkrsethkkletiarlllTlqlir....laanLqakglvhgkftvdnllldekgglmlggfta 190
                  +   +vn l+ + + + dl         + l +++++ ++ + +   + + ++   ++r        L++k ++h ++++dn+lld +g++++++f+ 
   CCD22768.1 595 HHKNIVNFLEAYLKTEDDLwvvmefmegGSLTDIIENSPVDDTSHSPLTESQIAY-IVRetcqGLKFLHDKHIIHRDIKSDNVLLDMNGRVKITDFGF 691
                  3333457777777777777999999999899999999988866666666666643.45411004556899************************9986 PP

  Kinase-like 191 Lvr..agtkvvlsevekgf.aPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltlateeakeew..kfklck.kipekvkaLlkkfL 281
                    +  +  + ++ +v   +   pE++ +r         ++  k+d+W lG+    +   + P  +  ++            k k+pek+ + +k+fL
   CCD22768.1 692 CAKltDQRSKRATMVGTPYwMAPEVVKQR---------EYDEKVDVWSLGIMTIEMLESEPPYLNEDPLKALYLiaTNGTPKlKHPEKLSLEIKRFL 779
                  55411555556677775542678998874.........44569********9998887777765555543333222223333477777777777776 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.9   6.2         8   1.8e+04     262     262 ..     373     373 ..     264     521 .. 0.64
   2 !   24.4   0.0   5.1e-09   1.1e-05     312     390 ..     651     721 ..     636     731 .. 0.86

  Alignments for each domain:
  == domain 1  score: -7.9 bits;  conditional E-value: 8
  Pkinase_fungal 262 s 262
                     +
      CCD22768.1 373 N 373
                     0 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 5.1e-09
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgee 390
                     +r+  +g++ L+ ++ i+HrDi  +N+l+       + +  + D+ +  +l d  ++s++ + +GT+++ma ev+k+ e
      CCD22768.1 651 VRETCQGLKFLH-DKHIIHRDIKSDNVLLD-----MNGRVKITDFGFCAKLTD--QRSKRATMVGTPYWMAPEVVKQRE 721
                     67788999****.****************9.....678899***********6..5555679*************9755 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   1.5     1e-08   2.3e-05       3     102 ..      72     177 ..      70     180 .. 0.78
   2 ?   -1.3   0.1       1.3   2.9e+03      25      66 ..     239     296 ..     233     312 .. 0.57

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1e-08
       PH_11   3 Gylkkkgsk....aWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaalfkidsirs....sksddllleistetkifflkgdsne 93 
                 G++  k +      W++r++ +l+d+ L++Yk++k    + + ++S  +   + ++ i+++ f+i ++      s+s++   + s + k ++++++++ 
  CCD22768.1  72 GWVSYKDDGilsfLWQKRYL-ILNDSYLSLYKNDKSTD-EPILQISLTNIVAVSRNQIKQNCFEIVRSSDrnsySSSSSNVSSSSDSKKSIYIATKTEV 168
                 67777777678778******.**************999.88999998888778888888888855333222355666666667777788888******* PP

       PH_11  94 eteeWveal 102
                 e + W+ a+
  CCD22768.1 169 ELHSWLDAI 177
                 ******997 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
       PH_11  25 vLeyYk................sekkkvvkhviklSngseaklkadlisaalfkidsi 66 
                 vL++Y+                ++ +k ++ ++  Sn s+  l+ +   a+    +++
  CCD22768.1 239 VLQFYQdynginnnnlnnnpnnENANKLLNNIKNPSNISQSSLGHKNEFAQFNGSRNA 296
                 6778876666666666665542222333777777777777777766544333333333 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.5   3.3e+03      70      85 ..     613     630 ..     600     663 .. 0.71
   2 ?   12.5   0.2   4.5e-05       0.1     164     196 ..     662     692 ..     634     694 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.5
                 EEEEEE----EE-SS..H CS
         APH  70 lfalieyvpgrsllr..k 85 
                 l++++e+++g sl++  +
  CCD22768.1 613 LWVVMEFMEGGSLTDiiE 630
                 799999999999988651 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.5e-05
                 S-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                  ++ ++H+D++++N+l+d  +grv  + Df+++
  CCD22768.1 662 HDKHIIHRDIKSDNVLLD-MNGRV-KITDFGFC 692
                 57889*************.88888.78899886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1261  (0.070333); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.79u 0.25s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 5556.75
//
Query:       CCD22769.1  [L=684]
Description: hypothetical protein NDAI_0A06140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-18   66.8   0.1    1.5e-18   66.8   0.1    3.0  2  NTP_transf_2  Nucleotidyltransferase domain
    1.6e-14   53.8   0.0    1.6e-14   53.8   0.0    2.2  2  PAP_assoc     Cid1 family poly A polymerase
     0.0028   17.7   0.0      0.012   15.7   0.0    2.1  1  Polbeta       Polymerase beta, Nucleotidyltransferase
  ------ inclusion threshold ------
        1.3    9.2   5.6        3.8    7.7   0.0    3.1  3  DUF2852       Protein of unknown function (DUF2852)


Domain annotation for each model (and alignments):
>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.1   3.5e-22   1.5e-18       1      93 [.     230     342 ..     230     344 .. 0.92
   2 ?   -5.2   5.8         4   1.8e+04      61      61 ..     579     579 ..     503     633 .. 0.61

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 3.5e-22
                   HHHHHHHHHHHTTTSEEEEEHHHHCTTSCTTSSEEEEEEESTTCHHH..................HHHEHHHHHHHHCCCEEECTTEEEEEECEEEC CS
  NTP_transf_2   1 lkklleelkelepvakvvlfGSyarGtalkgSDiDllvvlpeevsre..................kkeegleklaeiikfleellglevdlvtrekl 79 
                   ++kl++++kel+++ ++++fGSya++++l+gSDiD++v ++   +++                  ++e++++++++iikf+e+  ++++d++++   
    CCD22769.1 230 ISKLRKAVKELWSDSQLHIFGSYATDLYLPGSDIDCVVNSKMGDKEQrqylydlarhlkqkgltsQVEVIAKARVPIIKFVEKSSQIHIDVSFERTN 326
                   78*****************************************9888*********************************************55555 PP

                   CC..CTEEEEEECEEE CS
  NTP_transf_2  80 ed..pllvksileerp 93 
                   +    +l++++l+ +p
    CCD22769.1 327 GVeaAKLIREWLSATP 342
                   5447888888888776 PP

  == domain 2  score: -5.2 bits;  conditional E-value: 4
                   C CS
  NTP_transf_2  61 k 61 
                   k
    CCD22769.1 579 K 579
                   1 PP

>> PAP_assoc  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   3.6e-18   1.6e-14       1      62 []     397     457 ..     397     457 .. 0.93
   2 ?   -3.4   1.5       2.6   1.2e+04      33      43 ..     601     611 ..     590     619 .. 0.48

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 3.6e-18
                 -HHHHHHHHHHHHHHT--TTTEEEECSST-E..EEHHHHCGCS-SSEECESSSSEBEETTCCCC CS
   PAP_assoc   1 sLGeLLigFFeyYgreFdyenvvisirtggi..ltkkekgwesaeskernrfllaIeDPfeldn 62 
                 +LG+LLi+FFe+Yg++F y+ v+is+ +g    ++k+e++ +      r++f+laI+DP + +n
  CCD22769.1 397 NLGVLLIEFFELYGKNFAYDLVAISLLDGYPsyIPKSEWRSLL---PTRSSFTLAIQDPGDASN 457
                 8*************************9977777*********5...7789**********9987 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.6
                 EHHHHCGCS-S CS
   PAP_assoc  33 tkkekgwesae 43 
                  k+ek++e++e
  CCD22769.1 601 EKREKKKEKKE 611
                 23333333222 PP

>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.7e-06     0.012      17      68 ..     247     300 ..     232     317 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.7e-06
                 TEEEEEE-S------EEEEEEEESS-..--HHHHHHHHHHHHHH.SSSEEEEEE CS
     Polbeta  17 ylFGSrakgkareeSDiDlavllkek..ldleeelelaaelediklgkkvDlvd 68 
                  +FGS+a++ + + SDiD  v  k    ++ ++ ++la  l++  l  +v+++ 
  CCD22769.1 247 HIFGSYATDLYLPGSDIDCVVNSKMGdkEQRQYLYDLARHLKQKGLTSQVEVIA 300
                 69*****************99988775456666777777777776666666664 PP

>> DUF2852  Protein of unknown function (DUF2852)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00084       3.8      67     101 ..      11      45 ..       2      60 .. 0.83
   2 ?    2.9   0.1     0.026   1.2e+02      64      85 ..     154     175 ..     117     215 .. 0.79
   3 ?   -1.8   0.9      0.75   3.4e+03      53      67 ..     589     603 ..     561     633 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00084
     DUF2852  67 askraaassGNaaFdeyreeeLerLeeeqreFeef 101
                 +s+ ++++sGN+ F + r++ ++++e+  + F+++
  CCD22769.1  11 KSSPKKTNSGNKKFKKMRKSSINKIEKAFKVFNNH 45 
                 55667889******************998877765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.026
     DUF2852  64 aaraskraaassGNaaFdeyre 85 
                 + +a++++ +s G +aFdey +
  CCD22769.1 154 NLKAEQNSEESEGIEAFDEYGH 175
                 456778889999********65 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.75
     DUF2852  53 elfskakrereaara 67 
                 + ++++++e++++++
  CCD22769.1 589 NSLQTIENEKKKEKR 603
                 333333332221111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2704  (0.150817); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.86u 0.28s 00:00:01.14 Elapsed: 00:00:00.45
# Mc/sec: 4550.14
//
Query:       CCD22770.1  [L=186]
Description: hypothetical protein NDAI_0A06150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-88  292.5   1.8      1e-87  292.4   1.8    1.0  1  Ribosomal_L18   Ribosomal protein 60S L18 and 50S L18e
     0.0026   18.4   0.2     0.0065   17.1   0.2    1.9  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.26   11.3   0.0    1.6  1  Nudc_N          N-terminal conserved domain of Nudc.


Domain annotation for each model (and alignments):
>> Ribosomal_L18  Ribosomal protein 60S L18 and 50S L18e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.4   1.8   1.7e-91     1e-87       1     187 []       2     186 .]       2     186 .] 0.98

  Alignments for each domain:
  == domain 1  score: 292.4 bits;  conditional E-value: 1.7e-91
  Ribosomal_L18   1 gidlkekkk.kkskrkapksenvylklLvklyrfLarRtdskFnkvvlkrLfmsrinrpplslsrlvkkvkkkeeekkiavvvgtvtdDvrllevP 95 
                    gid+++k++ ++ +r+apks+nvylklLvkly fLarRtd+ Fnkv+lk Lfms+inrpp+s+sr+++ +k++++++k++vvvgtvtdD+r++e+P
     CCD22770.1   2 GIDHTSKQHkRSGHRTAPKSDNVYLKLLVKLYSFLARRTDAPFNKVILKSLFMSKINRPPVSVSRIARGLKQEGSANKTIVVVGTVTDDARVFELP 97 
                    7999988776999*********************************************************************************** PP

  Ribosomal_L18  96 klsvaALrftetararilkaGGeiltlDqLalraPtGkntvLlrGkkkareavkhfgaapgvphshkkpyvrskgrkfekargrrksrgfkv 187
                    k +vaALrft+ arari+kaGGe++tlDqLa+raP+G+nt++lrG++++reav+hfg+   +ph++k p++ skgrkfe++rg+r+s gfkv
     CCD22770.1  98 KTTVAALRFTAGARARIIKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGM---GPHKNKAPRILSKGRKFERGRGKRRSLGFKV 186
                    *********************************************************9...*****************************96 PP

>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   1.1e-06    0.0065      73     127 ..      60     122 ..       5     123 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.1e-06
                     -EEEGGGTTTTSSS.......SEEEE--S....--.-..--EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  73 eeidleelaeaglikk...kdgvKvlgkg....el.tk.klkvkaskfSkkAkekIeaaGGkve 127
                     ++++++++ ++gl ++   ++ + v+g+     ++ +  k +v a +f++ A+++I +aGG+++
      CCD22770.1  60 PPVSVSRI-ARGLKQEgsaNKTIVVVGTVtddaRVfELpKTTVAALRFTAGARARIIKAGGECI 122
                     44555555.33333335654444455543333444233359*********************98 PP

>> Nudc_N  N-terminal conserved domain of Nudc.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.3e-05      0.26      18      32 ..      27      41 ..      20      49 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.3e-05
      Nudc_N 18 dlLeafFsFLerrTD 32
                +lL +++sFL rrTD
  CCD22770.1 27 KLLVKLYSFLARRTD 41
                7999**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1451.12
//
Query:       CCD22771.1  [L=144]
Description: hypothetical protein NDAI_0A06160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-53  179.6   0.1    2.5e-53  179.5   0.1    1.0  1  Ribosomal_S19e  Ribosomal protein S19e


Domain annotation for each model (and alignments):
>> Ribosomal_S19e  Ribosomal protein S19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.5   0.1   1.4e-57   2.5e-53       1     136 [.       5     141 ..       5     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 179.5 bits;  conditional E-value: 1.4e-57
                     TSSSHHHHHHHHHS--S---S-SSS-SSSS-SS-S-SS-SSTTTHHH.HHHHHHHHTS--TTSGGGGS----SS-SSS-------THHHHHHHHH CS
  Ribosomal_S19e   1 tvkdVpaeelikalaeeLkksgklevPewadlvKtgsakelapeded.WfyvRaAsilRkvylrgpvGverlrkvYGgkkrrgvrpshfvkasgs 94 
                     +v+dV a+++i+a+a++L+++gklevP  +d+vKt+s++e++p+d++ Wfy RaAs++R++ylr++vGv++l+k YGg+k rgvrp+++ +asgs
      CCD22771.1   5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDSEgWFYKRAASVARHIYLRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGS 99 
                     599******************************************666*********************************************** PP

                     TTSSS--SSS---SS-HHHHHTHHHHH--SS--S--XXXXXX CS
  Ribosomal_S19e  95 virkilqqLeklglvkkekkkgrrltkkGqrlldriaeevak 136
                     v+r++lq+Lek+g+v+ + k+grr++++Gqr+ldria+++++
      CCD22771.1 100 VNRRVLQALEKIGVVEISPKGGRRISENGQRDLDRIAAQTLE 141
                     ***************888888*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1153.71
//
Query:       CCD22772.1  [L=552]
Description: hypothetical protein NDAI_0A06170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-33  112.7   0.2    4.5e-17   61.6   0.0    2.4  2  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
    5.8e-13   48.8   0.2    2.4e-07   30.8   0.0    2.8  2  RRM_7        RNA recognition motif
  ------ inclusion threshold ------
        0.7    9.8  21.8        1.6    8.6  21.8    1.7  1  RPN2_C       26S proteasome regulatory subunit RPN2 C-termina


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   7.6e-21   4.5e-17       1      63 [.     231     292 ..     231     299 .. 0.91
   2 !   48.9   0.0   7.1e-17   4.2e-13       1      69 [.     315     383 ..     315     384 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 7.6e-21
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkk 63 
                 lf+g+L++++tee+Lk++Fsk+G ++++k+++d + g+s+gf+f  Fe +++ ++ ++      
  CCD22772.1 231 LFIGGLNWETTEEKLKDYFSKYGNVVDLKIMKDaNSGRSRGFGFLSFEHPSSVDEVVK--SQHI 292
                 8*****************************************************9998..4444 PP

  == domain 2  score: 48.9 bits;  conditional E-value: 7.1e-17
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTT.EEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealng.kklggrel 69 
                 +fVg++ pdv  +e +e+F ++G i +++l+ d  tg+s+gf+f++++s e+ ++  +  n+  +++++++
  CCD22772.1 315 IFVGGIGPDVRPKEFEEFFAQWGTIIDAQLMLDkDTGRSRGFGFITYDSGEAVDRVCQ--NKyIQFKDKQI 383
                 8*****************************************************9999..55566766665 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0     4e-11   2.4e-07       1      69 [.     228     289 ..     228     298 .. 0.84
   2 !   15.2   0.0     3e-06     0.018       3      71 ..     314     375 ..     312     397 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 4e-11
       RRM_7   1 srkvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLlea 69 
                 s+k+F+GGl ++ tee+lk+ f+++g+v vd    +  ++ +       +g+ fl fe+ +sv +++++
  CCD22772.1 228 SCKLFIGGLNWETTEEKLKDYFSKYGNV-VDLKIMKDANSGR------SRGFGFLSFEHPSSVDEVVKS 289
                 8*************************97.7876555554443......36***************9987 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3e-06
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLleact 71 
                 k+FvGG+ +D+  +e ++ f ++g++ +d      +++         +g+ f+ +++ ++v ++ ++  
  CCD22772.1 314 KIFVGGIGPDVRPKEFEEFFAQWGTI-IDAQLMLDKDT-----G-RSRGFGFITYDSGEAVDRVCQNKY 375
                 9***********************87.55333322222.....2.246999999999999999887654 PP

>> RPN2_C  26S proteasome regulatory subunit RPN2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  21.8   0.00027       1.6      32     111 ..      23     104 ..      19     147 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00027
                 --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG.--------------------------------....--SS----SSEEE CS
      RPN2_C  32 leekkekekekvatAvLSttakakarakkkekekeeeekeedkmdvdeekeekekkekekkekekee....ekkkkekektfek 111
                 ++e+k++++e  ++Av S t  + +++  k++++e   +++d+ +v+e+++++++k +e+++++k+e    +++++++++t+++
  CCD22772.1  23 TTENKKEQAEPTTAAVTSSTETTDKQDDSKKDTEEP--TSKDETKVEEKSDDSKEKTAEESDTKKDEskedKESANKPTSTTSQ 104
                 678899999999999999998888777666666633..4444444444333332222222222222211224455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2453  (0.136817); expected 358.6 (0.02)
Passed bias filter:                      727  (0.0405488); expected 358.6 (0.02)
Passed Vit filter:                       210  (0.0117129); expected 17.9 (0.001)
Passed Fwd filter:                        58  (0.00323498); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.09u 0.33s 00:00:01.42 Elapsed: 00:00:00.48
# Mc/sec: 3444.52
//
Query:       CCD22773.1  [L=583]
Description: hypothetical protein NDAI_0A06180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-28   97.7   0.1    2.5e-23   82.5   0.1    2.5  2  Ras            Ras family
    5.5e-15   55.6   4.8    3.5e-09   36.9   0.0    3.0  3  Roc            Ras of Complex, Roc, domain of DAPkinase
     0.0013   18.2   0.1     0.0037   16.8   0.1    1.7  1  AAA_7          P-loop containing dynein motor region
     0.0024   17.3   0.0        1.2    8.5   0.0    2.4  2  TniB           Bacterial TniB protein
  ------ inclusion threshold ------
       0.13   12.6   2.6        0.3   11.4   1.9    2.0  1  Borrelia_orfD  Borrelia orf-D family


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0     2e-05      0.07       1      22 [.     112     133 ..     112     161 .. 0.77
   2 !   82.5   0.1   6.9e-27   2.5e-23      27     159 ..     283     429 ..     275     432 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
                 EEEEEESTTSSHHHHHHHHHHS CS
         Ras   1 KlvlvGdsavGKtslllrfvkd 22 
                 K++lvGd+ vGKts++l++ ++
  CCD22773.1 112 KILLVGDTDVGKTSMILSYCHE 133
                 89*****************875 PP

  == domain 2  score: 82.5 bits;  conditional E-value: 6.9e-27
                 SCTTTSSEEEEEEEEEET.TEEEEEEEEEETTSGGGHH.HHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHHHHST....TTSEEEEEEETTTGGG CS
         Ras  27 eyesTigvdfytkeievd.gkevkleiwDTAGqeefks.lrelyyrdaegillvyditsresfenvk.kwveeikrvae....envpivLvGnKvDlee 118
                 +  +Tig+d +t+ i++  +k+ +   wD AGqe+fk+ + ++ yr ++gi+l ydi + +sf+n+   w++++ +  +    ++v+++LvGnKvD+ +
  CCD22773.1 283 NTRPTIGIDIKTTLINIGgDKRFNCIFWDPAGQERFKNvMMNSLYRVSDGIILSYDICNLQSFQNCCqVWLKDVLDNLRfkdlSRVKFYLVGNKVDMYK 381
                 5789*************978999*************97356788*********************8769******9999999989************** PP

                 G-SS-HHHHHHHHHHHTSEE.......EEEBTTTTCTHHHHHHHHHHH CS
         Ras 119 kravsteegeelakelglkf.......letSAktnenveeafeellre 159
                 +r+v+ e++ ++  ++++ +       +e+S k ++nve +f+ +l +
  CCD22773.1 382 ERQVNHEDVLNMITNMEYDYglaisgnFEVSCKWENNVERTFNLILMD 429
                 *************999998877777778**************998765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   1.4e-07    0.0005       1      38 [.     112     148 ..     112     242 .. 0.78
   2 !   36.9   0.0   9.7e-13   3.5e-09      26     120 .]     282     379 ..     270     379 .. 0.76
   3 ?   -4.0   0.2       4.5   1.6e+04      30      48 ..     525     542 ..     512     552 .. 0.46

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.4e-07
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEE CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdflt 38 
                 K++lvGd+ vGKts++ +++++  s+++ st + ++ +
  CCD22773.1 112 KILLVGDTDVGKTSMILSYCHE-LSSHSPSTSSFKLNR 148
                 9*******************65.556667777666654 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 9.7e-13
                 -EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTT.T-HHHHCTSCEEEEEEE...GHHHHCH.HHHHHHHHHHCS.....SS-EEEE CS
         Roc  26 ekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrs.lhplylreaalailvyd...srssenl.keWlkelkkvag.....kspvilv 114
                  ++++tig+d++t+   +i g   d   k+++  +WD aGqerf++ ++++ +r ++ +il yd    +s++n  + Wlk++ ++ +     + ++ lv
  CCD22773.1 282 INTRPTIGIDIKTTL-INIGG---D---KRFNCIFWDPAGQERFKNvMMNSLYRVSDGIILSYDicnLQSFQNCcQVWLKDVLDNLRfkdlsRVKFYLV 373
                 56789******9865.46665...3...568899***********8578999***********98765567765489****98764321221346679* PP

                 EE-TTT CS
         Roc 115 gnkiDl 120
                 gnk+D+
  CCD22773.1 374 GNKVDM 379
                 ****96 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 4.5
                 TTTTEEEEEEECGGSGGCT CS
         Roc  30 stigvdfltkevtkikgve 48 
                 s  + +f++k+  + k+++
  CCD22773.1 525 SDKSGNFSNKQN-SSKKLQ 542
                 444444444442.223332 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     1e-06    0.0037      31      81 ..     108     156 ..      99     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1e-06
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdi 81 
                 +n+ ++llvG+t +GKt++i +++++l+  ++++ t +f+ +  ++qlq+ 
  CCD22773.1 108 TNNLKILLVGDTDVGKTSMILSYCHELS--SHSPSTSSFKLNRPSSQLQKR 156
                 67889***********************..777777788888888888864 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00033       1.2      37      59 ..     112     134 ..      99     159 .. 0.78
   2 !    6.3   0.0    0.0016       5.9     136     185 ..     275     324 ..     270     327 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00033
        TniB  37 nlllvGdsnnGKtmivekFarlh 59 
                 ++llvGd+++GKt+++ +++++ 
  CCD22773.1 112 KILLVGDTDVGKTSMILSYCHEL 134
                 689**********9999988654 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0016
        TniB 136 arkqreflnalksLgnelkipivlvGteealralrtDpqlasRFepialp 185
                  ++ + ++n+  ++g ++k +++ +G ++ ++++ +Dp  ++RF+++ ++
  CCD22773.1 275 NKQNEIIINTRPTIGIDIKTTLINIGGDKRFNCIFWDPAGQERFKNVMMN 324
                 55666677888899999****************************98765 PP

>> Borrelia_orfD  Borrelia orf-D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.9   8.5e-05       0.3      20      79 ..     225     282 ..     207     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.5e-05
  Borrelia_orfD  20 deaelsrystalvvfllkvkskvikyynddkfPvfeyfdlvtldeegskeanilknriti 79 
                    d+  l r s+ l+  +  +   v    n+d++  ++y d+   d++g k+a   +n+i i
     CCD22773.1 225 DDMLLKRKSLLLNKNMDSTSMDV--NDNNDNYTSYDYVDMKQKDNDGKKDASNKQNEIII 282
                    45567788889999999999999..889**********************9777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1616  (0.0901333); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 4565.40
//
Query:       CCD22774.1  [L=327]
Description: hypothetical protein NDAI_0A06200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-42  144.6  21.7    4.6e-42  144.2  21.7    1.2  1  Bax1-I    Inhibitor of apoptosis-promoting Bax1
  ------ inclusion threshold ------
        5.1    6.9  16.6        9.6    6.0  13.3    2.8  2  PAP2      PAP2 superfamily


Domain annotation for each model (and alignments):
>> Bax1-I  Inhibitor of apoptosis-promoting Bax1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2  21.7   5.1e-46   4.6e-42       3     207 .]      89     320 ..      87     320 .. 0.90

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 5.1e-46
      Bax1-I   3 flrkvYgllalgllltalvaavvlsspa.qlflslhivlflvvilaplalv.flslsaarlk.........................kkssalalalll 74 
                 f+++vY++l+++lllt  +++++ +sp+ q+f+++hi++++++ +  l+l+ fl++ + r++                         +k+s+  l++l+
  CCD22774.1  89 FMNRVYSILSAQLLLTSSFTYWATQSPTlQSFIQNHIGIWILSTISALILCfFLAF-TPRKDdyisenietgpsnslrepstpwyvlSKRSQ--LFVLG 184
                 9***************9999999999999**********************44443.334459**************999999997766777..***** PP

      Bax1-I  75 lftlleGlslspillvytgaiilqaflltaaifgglslyalttkr.....dlsglggflfagligliiaslvnlFlp.ssalelaisylgvllfsglil 167
                 lft++e++s+s++ l y+ ++il+a+++t+++++g+sl a++ k      + +++  +l ++l+++i ++++++F++  s++ l+++++g++lf+++++
  CCD22774.1 185 LFTIAEAYSISIVALTYDEKTILSALFITTIVVIGVSLTAMSGKFefaleSATSIYYWLNWALWIMIGMGFTMIFFGmNSTMDLIYGWFGAILFTVYLF 283
                 ********************************************9444433344455555****************99999****************** PP

      Bax1-I 168 yDtqkiierageygeedailaalsLyldfinlFlslLril 207
                 +Dtq+i+++ + ++ee  +++a++Lyld+inlFls+Lril
  CCD22774.1 284 VDTQLIFRK-VFPDEE--VKCAMMLYLDIINLFLSILRIL 320
                 *******86.677999..********************97 PP

>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.34   3.1e+03      20      46 ..      13      39 ..       8      73 .. 0.56
   2 ?    6.0  13.3    0.0011       9.6      83     129 ..     226     284 ..      89     290 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.34
        PAP2 20 KdlvgrpRPfflaeetkldtqvstlet 46
                K +v+r+R  f+ + +++  + +  +t
  CCD22774.1 13 KAFVNRTRLLFIKRRKPQAYSIKLSFT 39
                566666665555555555444443333 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0011
        PAP2  83 g............lvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayr 129
                 +               +++++l+  ++++++ +++g+  ++D++ G++ +i+++++++ 
  CCD22774.1 226 SgkfefalesatsIYYWLNWALWIMIGMGFTMIFFGMNSTMDLIYGWFGAILFTVYLFV 284
                 0344444566645334555666668999************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2336.38
//
Query:       CCD22775.1  [L=70]
Description: hypothetical protein NDAI_0A06210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-14   52.4   3.3    3.3e-13   49.8   3.3    1.9  1  Ribosomal_L23  Ribosomal protein L23


Domain annotation for each model (and alignments):
>> Ribosomal_L23  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   3.3   1.9e-17   3.3e-13      15      78 ..       3      54 ..       1      63 [. 0.81

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 1.9e-17
                   HHTT.E.EEEEE-SS-THHHHHHHHHHHHT--EEEEEEEEE--EBESSSSSEEBE--EEEEEEEE CS
  Ribosomal_L23 15 laek.nkyvFeVakdanKleikkaveklFgVkVekVntlnvkgkkkrvgrkvgrrksyKkaiVtL 78
                   + e+ n++vF+V++++nK++ikkav++l++V+V +Vntl++++ +k+             a+V+L
     CCD22775.1  3 KVEDgNTLVFQVSMKSNKYQIKKAVKELYEVDVLSVNTLVRPNGTKK-------------AYVRL 54
                   5566689*********************************9996665.............44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 542.11
//
Query:       CCD22776.1  [L=241]
Description: hypothetical protein NDAI_0A06220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-07   31.3   0.0    3.9e-07   30.4   0.0    1.4  1  Ribosomal_S11  Ribosomal protein S11


Domain annotation for each model (and alignments):
>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   2.2e-11   3.9e-07       8     110 .]     131     240 ..     129     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2.2e-11
  Ribosomal_S11   8 sfnntiititdlkGaevlvksaGglgvkasrkssPyaaqlaaekaaekvldkGi..kavevkvkgpGpGreaalrala.raGlki....griedvt 96 
                    s+n+ ++    l  ++ ++ s+G lg++++ +    a+ ++a ka + + +kG+  k++e+ ++  G Gr a + al+ + G +i    +ri d t
     CCD22776.1 131 SYNEMVLYYMKLPQKVKFAISTGCLGFRKAARGEYEAGFQTATKAFQMIEEKGLtdKKIEIVMRDFGKGRSAFVAALNgKEGNNIrkyvARISDKT 226
                    566666666667777888999********9999999******************44578999999************85678765323379***** PP

  Ribosomal_S11  97 PiPhdgirrpkkrr 110
                    P+   g+r+pk rr
     CCD22776.1 227 PLKFGGVRSPKIRR 240
                    ***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1977.37
//
Query:       CCD22777.1  [L=170]
Description: hypothetical protein NDAI_0A06230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-54  181.8   4.3    8.3e-54  181.6   4.3    1.0  1  UPF0220   Uncharacterised protein family (UPF0220)


Domain annotation for each model (and alignments):
>> UPF0220  Uncharacterised protein family (UPF0220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   4.3   4.6e-58   8.3e-54       2     165 ..       5     162 ..       4     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 181.6 bits;  conditional E-value: 4.6e-58
     UPF0220   2 edrlfrfrkpklklensakrravgvylaGaLfalgfwlliDaaivskkanasdvhvtfvdwipgicstlgmlivnsieksrlsgdslgqsgssvawkar 100
                 e+rlfr++  +l   +  + +++ vy+aGaLf +g++ll+D+a++sk +n+sdv+vtfvdwi +ics+lgm+++nsie+++++ +++g ++      + 
  CCD22777.1   5 ENRLFRLPYGSL---SLGSFKTWFVYIAGALFGIGVCLLLDIALFSKLNNGSDVQVTFVDWISFICSILGMIVINSIERRQITMERMGVEN---KGLSS 97 
                 689999966644...55899********************************************************************888...45689 PP

     UPF0220 101 vvLflGfallagglagslvvlilkYvvkdytefptlgmGvanvlqNllimlssvvlwvsqnvede 165
                 ++Lf+G+al+agg+ags+v+li+kYv++dyte+p+lgmGv+nvl N++i+ls+++ w  qn+ +e
  CCD22777.1  98 FILFIGCALTAGGFAGSIVILIVKYVMEDYTEYPALGMGVNNVLGNFCIFLSCIITWSIQNMGEE 162
                 *************************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1304.78
//
Query:       CCD22778.1  [L=605]
Description: hypothetical protein NDAI_0A06240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-30  105.4   3.0    1.3e-30  105.4   3.0    5.3  7  Kri1_C    KRI1-like family C-terminal
    1.9e-15   57.3  17.5    1.9e-15   57.3  17.5    6.7  9  Kri1      KRI1-like family
  ------ inclusion threshold ------
      0.049   14.0   6.0       0.57   10.6   0.5    3.1  2  YtzH      YtzH-like protein


Domain annotation for each model (and alignments):
>> Kri1_C  KRI1-like family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   1.6         3   1.8e+04      67      85 ..       5      23 ..       3      26 .. 0.67
   2 ?   -1.7   0.2      0.59   3.5e+03      14      30 ..     253     271 ..     244     276 .. 0.65
   3 ?   -6.4  10.3         3   1.8e+04      64      87 ..     299     322 ..     294     324 .. 0.84
   4 ?   -3.6   0.1       2.3   1.4e+04      60      76 ..     394     410 ..     394     418 .. 0.64
   5 ?   -6.0   9.3         3   1.8e+04      66      83 ..     439     456 ..     433     462 .. 0.43
   6 !  105.4   3.0   2.1e-34   1.3e-30       3      89 .]     462     561 ..     460     561 .. 0.89
   7 ?   -5.4   2.7         3   1.8e+04      68      79 ..     589     600 ..     580     603 .. 0.34

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3
      Kri1_C 67 ekkkkdkkklkkkkrlrew 85
                ++ +k+ ++ +kk++l+e 
  CCD22778.1  5 KSAAKRARETAKKAQLNES 23
                4566777888888888775 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.59
      Kri1_C  14 dledvig..dlkvrFkYre 30 
                 ++ed ++  +++++F+Y+ 
  CCD22778.1 253 EFEDAVEkfENAYNFRYED 271
                 4555554467888899975 PP

  == domain 3  score: -6.4 bits;  conditional E-value: 3
      Kri1_C  64 rdkekkkkdkkklkkkkrlrewrk 87 
                 rd+ek+ k+++k +k+++++++++
  CCD22778.1 299 RDEEKQVKEQNKTEKERKIQKKKT 322
                 788999999999999999988776 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 2.3
      Kri1_C  60 lapYrdkekkkkdkkkl 76 
                 +a + dk+k++ dk   
  CCD22778.1 394 MADFYDKQKEEADKILN 410
                 56777787777776544 PP

  == domain 5  score: -6.0 bits;  conditional E-value: 3
      Kri1_C  66 kekkkkdkkklkkkkrlr 83 
                 k++k+k+k k +kkk+++
  CCD22778.1 439 KSRKDKQKDKKSKKKEKK 456
                 333333333333333333 PP

  == domain 6  score: 105.4 bits;  conditional E-value: 2.1e-34
      Kri1_C   3 leelvdeyykldledvi.......g......dlkvrFkYrevspesFgLtareILladDkeLnefvglkklapYrdkekkkkdkkklkkkkrlrewrke 88 
                 +e+++++++   +++v+       g      +++++F+YrevspesFgLtareI++adD++Lnef+glkk+apYr+ke ++kdk+k++k++rlr+wrk+
  CCD22778.1 462 VENAIEQNKLAIVDEVEeeeeerkGrlrskeEQTLKFRYREVSPESFGLTAREIFAADDTDLNEFIGLKKFAPYRPKELRAKDKRKVTKSRRLRDWRKK 560
                 688899998888998776665555155556699*****************************************************************8 PP

      Kri1_C  89 v 89 
                 v
  CCD22778.1 561 V 561
                 6 PP

  == domain 7  score: -5.4 bits;  conditional E-value: 3
      Kri1_C  68 kkkkdkkklkkk 79 
                  +++d+k+ kk+
  CCD22778.1 589 HHHSDRKRSKKR 600
                 222222222222 PP

>> Kri1  KRI1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   3.3      0.66     4e+03      75      99 ..      48      70 ..       3      75 .. 0.68
   2 ?   -5.1  10.7         3   1.8e+04      66      95 ..     166     204 ..     103     213 .. 0.67
   3 ?  -11.4  17.1         3   1.8e+04      29      94 ..     165     203 ..     142     262 .. 0.60
   4 ?   -1.7   1.4      0.74   4.4e+03      83     102 ..     242     261 ..     214     276 .. 0.62
   5 !   57.3  17.5   3.2e-19   1.9e-15       3      98 ..     306     397 ..     304     402 .. 0.86
   6 ?   -1.3   0.6      0.56   3.4e+03      80      94 ..     402     428 ..     393     437 .. 0.40
   7 ?   -8.2  16.2         3   1.8e+04       2      42 ..     443     484 ..     433     519 .. 0.56
   8 ?   -6.1   4.6         3   1.8e+04       8      25 ..     545     562 ..     537     598 .. 0.53
   9 ?   -2.6   1.6       1.4   8.4e+03       2      21 ..     582     601 ..     580     604 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.66
        Kri1 75 eyyaeedeeekkPkwdddidikdiv 99
                +y++e+de+++  + +d++d ++++
  CCD22778.1 48 DYNDEDDEDDE--TSEDEDDFGELI 70
                56666666655..556666666665 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 3
        Kri1  66 rkmkklFgeeyyaeede.........eekkPkwdddidi 95 
                 +++k++Fg+  +++++e         ++k+P+ d d d 
  CCD22778.1 166 NEIKNAFGNSDDEKDEEdddgedaflKKKEPTKDHDNDD 204
                 556666766444333333466677776666777666554 PP

  == domain 3  score: -11.4 bits;  conditional E-value: 3
        Kri1  29 lekikkaageeeaalkeleeeeledlldgdfDpekwdrkmkklFgeeyyaeede.......eekkPkwdddid 94 
                 l++ik+a g+++++ +e +                                  +       ++k+P+ d d d
  CCD22778.1 165 LNEIKNAFGNSDDEKDEED----------------------------------DdgedaflKKKEPTKDHDND 203
                 4555555554333333333..................................14444444444444444433 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.74
        Kri1  83 eekkPkwdddidikdivpdd 102
                 ++ + + +dd++ +d v+++
  CCD22778.1 242 DGDMNELEDDEEFEDAVEKF 261
                 44444555555555555544 PP

  == domain 5  score: 57.3 bits;  conditional E-value: 3.2e-19
        Kri1   3 keeekeekkeelkrlkklkreeieeklekikkaageeeaalkeleeeeledll.dgdfDpekwdrkmkklFgeeyyaeedeeekkPkwdd.did.ikdi 98 
                 ke++k ek+++++++k+ k++++++ le++kk++g   a+++e + ++++d+l ++df +++wd+ ++ lF+ee+y++    e kP+wdd d+d ++d+
  CCD22778.1 306 KEQNKTEKERKIQKKKTKKINQLTDILEQLKKEYG---AEINEDMVKKITDTLlKNDFKDDEWDKVVADLFNEEFYNQ----EGKPTWDDeDDDiMADF 397
                 99*********************************...7888888999999888***********************7....567***87444424455 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 0.56
        Kri1  80 ede............eekkPkwdddid 94 
                 ++e            e+     + +id
  CCD22778.1 402 KEEadkilnennsedEDDSTHNEAEID 428
                 222333443333332222222233444 PP

  == domain 7  score: -8.2 bits;  conditional E-value: 3
        Kri1   2 rkeeekeekkeelkrlkklkreeiee.klekikkaageeeaa 42 
                  k++ k+ kk+e+k+l +l  + ie+ kl+ + ++  eee+ 
  CCD22778.1 443 DKQKDKKSKKKEKKQLAELVENAIEQnKLAIVDEVEEEEEER 484
                 244444444444444444444555431444444444433333 PP

  == domain 8  score: -6.1 bits;  conditional E-value: 3
        Kri1   8 eekkeelkrlkklkreei 25 
                 ++k  + +rl+  +++ +
  CCD22778.1 545 KRKVTKSRRLRDWRKKVF 562
                 333334444444443322 PP

  == domain 9  score: -2.6 bits;  conditional E-value: 1.4
        Kri1   2 rkeeekeekkeelkrlkklk 21 
                 +k +e++    ++kr kk k
  CCD22778.1 582 KKVSEEQHHHSDRKRSKKRK 601
                 66677777777777777766 PP

>> YtzH  YtzH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   9.5e-05      0.57       3      65 ..     321     385 ..     320     401 .. 0.83
   2 ?    4.5   0.7    0.0075        45      15      44 ..     442     471 ..     441     494 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.5e-05
        YtzH   3 nehqltlLkDiLkeqqadccgtvseceQierlvksllaneevdedvkqvLeeiYa...ysqegkss 65 
                 ++++++ L+DiL++ +++  ++++e + +++++  ll+n+  d++  +v+ ++++   y+qegk +
  CCD22778.1 321 KTKKINQLTDILEQLKKEYGAEINE-DMVKKITDTLLKNDFKDDEWDKVVADLFNeefYNQEGKPT 385
                 5789999*****9888776666665.78************************98766699999754 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0075
        YtzH  15 keqqadccgtvseceQierlvksllaneev 44 
                 k++q+d+    +e +Q+ +lv++ ++++++
  CCD22778.1 442 KDKQKDKKSKKKEKKQLAELVENAIEQNKL 471
                 689********************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3846  (0.214513); expected 358.6 (0.02)
Passed bias filter:                      700  (0.0390429); expected 358.6 (0.02)
Passed Vit filter:                       190  (0.0105974); expected 17.9 (0.001)
Passed Fwd filter:                        72  (0.00401584); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.56u 0.32s 00:00:01.88 Elapsed: 00:00:00.54
# Mc/sec: 3361.59
//
Query:       CCD22779.1  [L=815]
Description: hypothetical protein NDAI_0A06250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-38  130.9   7.9    1.7e-23   83.4   1.0    2.3  2  CorA      CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   1.0   9.3e-28   1.7e-23       6     233 ..     379     610 ..     375     616 .. 0.88
   2 !   51.0   0.9   6.9e-18   1.2e-13     189     290 ..     634     739 ..     628     742 .. 0.87

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 9.3e-28
        CorA   6 WldlsspteeeleeLaeelgldelaledlldseerprvedyddylllvlpsveldkseeeeeev.plsillgdnflitvrreplealdevikrlkdegg 103
                 Wl++  pt+ee++ L   +g++ l++ed+  +e r +ve +++y +++++ +++dk++e++ e  ++ +++ +n +++++ +p++   +v+kr+++ ++
  CCD22779.1 379 WLNCICPTDEEMKILTSAFGIHALTTEDIKMQEPREKVEIFKTYYFISFHTLDIDKESENYLERiNMYFIVFRNGILSFHYSPVDHCGNVRKRIRQLRN 477
                 ************************************************************98888******************************6666 PP

        CorA 104 kpk.spgellyrlldeivdrlfellekleeeldeledel...edstkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkeylrdll 198
                  ++ ++ ++ y+l+d i+d++++++  +e   d  ed++   +ds     l+++ + rr++  l r l+ + +v+ ++lak++++  +++++++  +  
  CCD22779.1 478 YVEvNADWICYALIDDITDHFAPVIHSIEYSADAFEDTVflnRDSDFSTTLQRIGKNRRKVMALMRLLSGKADVI-KMLAKRFHDYQKRQKSLLSTNNN 575
                 655388999******************************99999999999*************************.99998999999988766555555 PP

        CorA 199 delerllemlealrerleslqdtyssllserlNrv 233
                 +  +   +++++ ++ ++    +  ++ ++++N++
  CCD22779.1 576 SGNTTKPDESNNNSKDISTSEGSSTTITNNNNNNN 610
                 55555677777777777777777777777776665 PP

  == domain 2  score: 51.0 bits;  conditional E-value: 6.9e-18
        CorA 189 edkeylrdlldelerllemlealrerleslqdtyssllser....lNrvmkvL...TvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglma 280
                 + + yl d++d++  +++ l ++ +   + + +y ++l+ +    +Nrv  +L   T+l ++++Pl +itG++GmN+k  P+ + ++ ++f +++g+  
  CCD22779.1 634 DIAMYLGDIQDHILTMQNNLRSYENIFARTHANYLAQLQVEsfnsNNRVSEILgkvTILGTMLIPLNVITGLFGMNVK-VPGRDVGNLAWFFGIFGVL- 730
                 55689**********************************9999999********************************.********66666555555. PP

        CorA 281 llailllfwf 290
                  +ai++  w+
  CCD22779.1 731 -FAIGIGGWI 739
                 .555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1441  (0.0803726); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 5654.52
//
Query:       CCD22780.1  [L=532]
Description: hypothetical protein NDAI_0A06260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1705  (0.0950973); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 3722.16
//
Query:       CCD22781.1  [L=210]
Description: hypothetical protein NDAI_0A06270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-31  108.3   2.1    2.1e-31  107.7   2.1    1.3  1  zf-DNL         DNL zinc finger
  ------ inclusion threshold ------
       0.03   14.1   0.1      0.041   13.7   0.1    1.3  1  UPF0167        Uncharacterised protein family (UPF0167)
      0.041   13.8   0.5        2.7    8.0   0.0    2.3  2  zinc_ribbon_4  zinc-ribbon domain
       0.13   12.3   1.0        0.2   11.7   1.0    1.5  1  HypA           Hydrogenase/urease nickel incorporation, metal
        3.4    7.6   5.4         42    4.1   5.6    2.3  1  TFIIS_C        Transcription factor S-II (TFIIS)


Domain annotation for each model (and alignments):
>> zf-DNL  DNL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   2.1   5.8e-35   2.1e-31       2      63 ..      96     157 ..      95     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 5.8e-35
      zf-DNL   2 ltftCkaCetrsskeiskkaYekGvVivqCpgCknrHliaDnLgwfedkkktiedilkekge 63 
                 ++ftCk+C+trss+++sk+aY+kG+V+++CpgCknrHliaD+L++f+d++ tiedi+k++ge
  CCD22781.1  96 IAFTCKKCDTRSSHTMSKQAYTKGTVLITCPGCKNRHLIADHLKIFNDDHITIEDIMKSRGE 157
                 89**********************************************************98 PP

>> UPF0167  Uncharacterised protein family (UPF0167)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   1.1e-05     0.041      21      87 ..      98     162 ..      88     203 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
     UPF0167  21 ekCqcCgkereliyespfysvedvealCpwCiadGsaakkfegefqddaslveeeldeelleellkr 87 
                  +C+ C+ +++++++++ y++  v   Cp C +   +a++++  f+dd+ ++e ++ ++  e++++ 
  CCD22781.1  98 FTCKKCDTRSSHTMSKQAYTKGTVLITCPGCKNRHLIADHLK-IFNDDHITIE-DIMKSRGEDVSQS 162
                 58*****************************99999999886.6778877777.5555555555444 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.017        61      27      33 ..      99     105 ..      92     108 .. 0.65
   2 ?    8.0   0.0   0.00074       2.7       3      16 ..     123     136 ..     118     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.017
  zinc_ribbon_4  27 rCskCgh 33 
                    +C+kC +
     CCD22781.1  99 TCKKCDT 105
                    5555544 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00074
  zinc_ribbon_4   3 itCpsCkakyeidd 16 
                    itCp Ck ++ i+d
     CCD22781.1 123 ITCPGCKNRHLIAD 136
                    99*****9999988 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.0   5.6e-05       0.2      65      97 ..      92     133 ..       8     151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.6e-05
                 EEE--EEEETTTS-EEECHH.HHH........S-TTTSSS-E CS
        HypA  65 eevpvkvrCreCgkefelee.kal........rCpkCgsadv 97 
                  +  + ++C++C+++ +++  k++        +Cp C+++++
  CCD22781.1  92 PQLMIAFTCKKCDTRSSHTMsKQAytkgtvliTCPGCKNRHL 133
                 45567899*******9976633225889999******99765 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   5.6     0.012        42       1      37 [.      98     131 ..      98     133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.012
     TFIIS_C   1 akCpkCgsreayffqlQtRsaDEpmtvfykCtkCghr 37 
                 ++C+kC+ r  + + +Q   a +  tv ++C  C++r
  CCD22781.1  98 FTCKKCDTRSSHTMSKQ---AYTKGTVLITCPGCKNR 131
                 68********9999776...67788999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1516.85
//
Query:       CCD22782.1  [L=354]
Description: hypothetical protein NDAI_0A06280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-55  188.0   0.0    3.5e-55  187.3   0.0    1.4  1  SGL           SMP-30/Gluconolactonase/LRE-like region
    6.6e-05   23.0   0.0          3    8.1   0.0    3.4  3  Arylesterase  Arylesterase


Domain annotation for each model (and alignments):
>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.3   0.0   3.9e-59   3.5e-55       1     245 [.      26     314 ..      26     315 .. 0.93

  Alignments for each domain:
  == domain 1  score: 187.3 bits;  conditional E-value: 3.9e-59
         SGL   1 lgEGpvwdeeegaLlwvDilgqrihrldpatgketv............................ldtpesvGaiaprkd...grlvvasksglalldla 68 
                 l+EG+++++e+++L+w+Dil+++ihrl++ t++                               ld++esvG+i+p ++   + ++++s++g+ ++dl+
  CCD22782.1  26 LAEGITYINETDTLYWIDILKGEIHRLKKLTASGGEfkeenynylvlqdsnyvrdakvknpgisLDFNESVGVIFP-DHsndNIVLFGSRYGIGRCDLD 123
                 79*************************999999888899*************************************.333558899************* PP

         SGL  69 sgeletladeee......dekpllrfNDgvvdpdGr.lwfGtmgdeeakgeevgalyrldpdgk.....lervlddltipNGlawspdgktlYlaDslt 155
                  g++e+++ + e      d++ +lr+NDg+++p G+ +++G m+d+  + +++g+++++d +gk     ++++  +++ipN+++w++dg+ +Yl+Dsl 
  CCD22782.1 124 IGTWEYILLYSEstevdhDRVLRLRSNDGNISPCGKyIYIGLMNDFPLELKDEGCVLKIDLNGKtaeerIKVIWPRIKIPNAIHWNADGSLMYLTDSLS 222
                 **********66677888999*****************************************6667787888889************************ PP

         SGL 156 rkiwaydvdaeggklsnrrvfadlkkge......gepDGlavDa.eGnvwvAvwgggkvvrfdpd.Gklieeiklp.ak.rvtscaFgGpdlrtLyits 244
                 ++iw+y+ +++++     ++++d+kk +       epDG+avD  +G +++Avw++ kv++++ + Gkl++ei lp  + r+++c+  G+d   L++t+
  CCD22782.1 223 FTIWEYNESENTK-----KKLIDIKKSNnldilsPEPDGSAVDIsTGLLYTAVWSTRKVQVYQLKdGKLVQEILLPnNTpRISCCCIVGND---LFVTT 313
                 *******986666.....7799**999999999988*******99******************999**********8557********999...****9 PP

         SGL 245 a 245
                  
  CCD22782.1 314 G 314
                 6 PP

>> Arylesterase  Arylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00034         3      55      83 ..      26      54 ..      20      57 .. 0.93
   2 !    3.5   0.0    0.0092        82      43      72 ..     136     165 ..     120     168 .. 0.66
   3 !    7.1   0.0   0.00067         6      46      84 ..     193     231 ..     189     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00034
  Arylesterase 55 sanGInidadkkyiyvadilresihvmkk 83
                   a GI++  +   +y  dil+ +ih++kk
    CCD22782.1 26 LAEGITYINETDTLYWIDILKGEIHRLKK 54
                  589*************************8 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.0092
  Arylesterase  43 psevk.vvasglssanGInidadkkyiyvad 72 
                   + ev    + +l s  G ni++  kyiy++ 
    CCD22782.1 136 STEVDhDRVLRLRSNDG-NISPCGKYIYIGL 165
                   44443134566777666.9**********85 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.00067
  Arylesterase  46 vkvvasglssanGInidadkkyiyvadilresihvmkkh 84 
                   +kv   +++ +n I  +ad   +y++d+l   i+ ++  
    CCD22782.1 193 IKVIWPRIKIPNAIHWNADGSLMYLTDSLSFTIWEYNES 231
                   566667999************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2603.98
//
Query:       CCD22783.1  [L=961]
Description: hypothetical protein NDAI_0A06290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.5    8.7   6.7       0.12   12.3   0.7    2.2  2  DUF1752   Fungal protein of unknown function (DUF1752)


Domain annotation for each model (and alignments):
>> DUF1752  Fungal protein of unknown function (DUF1752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.7      0.19   3.5e+03       1      10 [.     126     135 ..     126     137 .. 0.77
   2 ?   12.3   0.7   6.5e-06      0.12      17      25 ..     200     208 ..     196     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.19
     DUF1752   1 lWkyytkkkk 10 
                 +Wky+ + k+
  CCD22783.1 126 SWKYIMSIKN 135
                 8***976665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.5e-06
     DUF1752  17 RLENlSWRl 25 
                 RLEN+SWRl
  CCD22783.1 200 RLENISWRL 208
                 ********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 7049.48
//
Query:       CCD22784.1  [L=807]
Description: hypothetical protein NDAI_0A06300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-20   72.4  15.0    6.4e-12   45.5   2.4    4.5  4  Myb_DNA-binding  Myb-like DNA-binding domain
    1.6e-17   63.5  15.9    8.5e-15   54.7   5.2    3.6  3  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0094   16.1   1.3      0.043   14.0   0.2    2.6  2  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
  ------ inclusion threshold ------
        1.8    9.3   7.8        1.8    9.3   0.7    2.9  3  DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomer


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.14   6.2e+02      22      41 ..     442     463 ..     402     466 .. 0.80
   2 !   45.5   2.4   1.4e-15   6.4e-12       1      45 [.     474     517 ..     474     518 .. 0.97
   3 !    7.5   0.2     0.001       4.6       2      16 ..     527     541 ..     526     544 .. 0.88
   4 !   24.8   0.1   4.2e-09   1.9e-05      22      45 ..     693     717 ..     678     718 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.14
                      C..HHHHHHHHTSS-HHHHHHH CS
  Myb_DNA-binding  22 r..WkkIaerlggRtekqcrsr 41 
                      +  W+ I + l+ R+  ++  +
       CCD22784.1 442 DnfWNNIYKVLPYRSNSSIYKH 463
                      146***********99998766 PP

  == domain 2  score: 45.5 bits;  conditional E-value: 1.4e-15
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45 
                      rgkWteeE+ +L+e++k   ++W++I + l +R +++cr+rwrny
       CCD22784.1 474 RGKWTEEEERQLAELCKDKEGQWSEIGKIL-NRMPEDCRDRWRNY 517
                      89****************************.8************9 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.001
                      SSSBHHHHHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleav 16 
                      +kW+eeE+ lL + +
       CCD22784.1 527 NKWSEEEESLLKKII 541
                      79*********9876 PP

  == domain 4  score: 24.8 bits;  conditional E-value: 4.2e-09
                      CHHHHHHHHT.SS-HHHHHHHHHHH CS
  Myb_DNA-binding  22 rWkkIaerlg.gRtekqcrsrwrny 45 
                      +W+ I+er+g +R++ qcr++w+++
       CCD22784.1 693 NWTVISERMGgTRSRIQCRYKWNKL 717
                      6*********99***********97 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.29   1.3e+03      19      35 ..     444     460 ..     404     469 .. 0.72
   2 !   54.7   5.2   1.9e-18   8.5e-15       1      60 []     477     537 ..     477     537 .. 0.98
   3 !   14.0   0.6     1e-05     0.046      19      44 ..     693     719 ..     677     737 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.29
  Myb_DNA-bind_6  19 dWknIaealnrRtpkqc 35 
                      W+nI + l+ R+ +++
      CCD22784.1 444 FWNNIYKVLPYRSNSSI 460
                     49999999987776654 PP

  == domain 2  score: 54.7 bits;  conditional E-value: 1.9e-18
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwkn..kLrpkisrkkwskeedirL 60 
                     WteeE++ L++l+++ + +W++I ++ln R p++c+drw+n  k+ +k+  +kws+ee+++L
      CCD22784.1 477 WTEEEERQLAELCKDKEGQWSEIGKILN-RMPEDCRDRWRNyvKCGSKRASNKWSEEEESLL 537
                     ****************************.************99999*************987 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 1e-05
  Myb_DNA-bind_6  19 dWknIaealn.rRtpkqcfdrwknkL.r 44 
                     +W+ I+e ++  R+  qc+++w++ L r
      CCD22784.1 693 NWTVISERMGgTRSRIQCRYKWNK-LvR 719
                     8********55*************.523 PP

>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   9.6e-06     0.043       6      50 ..     454     498 ..     449     505 .. 0.89
   2 ?   -1.1   0.0      0.52   2.3e+03      26      41 ..     526     541 ..     504     545 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.6e-06
  SANT_DAMP1_like   6 fnkkvevpeytdeeYeellkeedWtkeetdyLfdlckeydlrfvv 50 
                      +  + ++++  + +Y+ + ++ +Wt+ee ++L +lck+ + ++  
       CCD22784.1 454 YRSNSSIYKHMRRKYHIFNQRGKWTEEEERQLAELCKDKEGQWSE 498
                      6677889999999**999999*****************9999975 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.52
  SANT_DAMP1_like  26 eedWtkeetdyLfdlc 41 
                      +++W++ee + L +++
       CCD22784.1 526 SNKWSEEEESLLKKII 541
                      378****999887765 PP

>> DXP_reductoisom  1-deoxy-D-xylulose 5-phosphate reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.7   0.00039       1.8      47     114 ..     140     207 ..     111     211 .. 0.83
   2 ?    3.4   0.1     0.026   1.1e+02      23      91 ..     342     410 ..     333     428 .. 0.72
   3 ?   -3.3   0.2         3   1.4e+04      46      81 ..     592     628 ..     566     635 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00039
                      T-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHCHTT-SEEEE--SSGGGHHHHHHHHHTT CS
  DXP_reductoisom  47 kpklvavadeeaaeelkealkekelktevlvGeealkelaeeeeadvvvaaivGaaGLkptlaaikag 114
                        ++ + +de+++++++++ +++  k+++   +    e+ +++++++v +  ++++ + p+la+++++
       CCD22784.1 140 DSDYTTTHDENTTTSVQKKATTTRKKIKLEKQTTKNHEIQQQNDMNIVANTATSTVMVDPALATLDHN 207
                      46788999************9999***************************************99876 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.026
                      TTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHCHTT- CS
  DXP_reductoisom  23 dkfevvalaagsnvellaeqakefkpklvavadeeaaeelkealkekelktevlvGeealkelaeeeea 91 
                       +f+++    +++ ++     ++++  + +++de++ + l ea+k++++ ++v++ ++  k+  + e++
       CCD22784.1 342 SQFQLEIALQQQQQQRQHPHQQHIHRPYHSIEDEQTLKLLDEAVKKASSLIDVTTRSSKTKSFNKLEDV 410
                      56777655555555556666677778899****************999999998888877777665544 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3
                      HT-SEEEESSHHHHHHHHHHHHH.TTSSSEEEESHHH CS
  DXP_reductoisom  46 fkpklvavadeeaaeelkealke.kelktevlvGeea 81 
                      ++++  +v +++  +el+++ ++ +++++++  Geea
       CCD22784.1 592 HEARNDIVDNAQVDTELQQQDQDeHQQEPNYQNGEEA 628
                      3344444555566666665554424556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2963  (0.165263); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.10u 0.29s 00:00:01.39 Elapsed: 00:00:00.48
# Mc/sec: 5034.70
//
Query:       CCD22785.1  [L=244]
Description: hypothetical protein NDAI_0A06310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.21   11.1   0.6       0.31   10.5   0.0    1.5  2  E1-E2_ATPase  E1-E2 ATPase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2      0.42   7.6e+03     121     135 ..       7      21 ..       2      35 .. 0.45
   2 ?   10.5   0.0   1.7e-05      0.31     146     175 ..     194     223 ..     176     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.42
                   HHHHHHHHHHHHHHH CS
  E1-E2_ATPase 121 vlvpvvlliallvfl 135
                   +++++++++al+ ++
    CCD22785.1   7 IVSFFSFTFALFHAV 21 
                   333333333333333 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 1.7e-05
                   HHHHHHHHHHHHHS-TTHHHHHHHHHHHHH CS
  E1-E2_ATPase 146 eallralallvaaiPcaLplavplalalga 175
                    +++ ++al+v+ +P  Lpl+ ++++++ga
    CCD22785.1 194 AYVFTFIALFVGKCPFYLPLLCSIIFMFGA 223
                   67778***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1767.94
//
Query:       CCD22786.1  [L=349]
Description: hypothetical protein NDAI_0A06320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-24   84.8   0.0    8.5e-24   84.0   0.0    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
    1.9e-14   54.9   0.0    4.2e-14   53.7   0.0    1.6  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    5.6e-09   35.9   0.0    1.1e-08   34.9   0.0    1.6  1  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.015   14.8   0.2      0.022   14.2   0.2    1.3  1  adh_short     short chain dehydrogenase
      0.094   13.0   0.1       0.22   11.8   0.1    1.5  1  TrkA_N        TrkA-N domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   2.4e-27   8.5e-24       3     117 ..     177     294 ..     175     308 .. 0.89

  Alignments for each domain:
  == domain 1  score: 84.0 bits;  conditional E-value: 2.4e-27
                 HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.EEHH CS
  ADH_zinc_N   3 GlaavqlAkalGaeviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.fdlr 100
                 Gl+  ql ka Ga+viav+ss+ekl+lak++Ga+++in+k++d+  ++ e+t+ +gv+++f+ vG ++t+ + l++lk +G++v +G  +g+ + ++++
  CCD22786.1 177 GLIFDQLIKARGAHVIAVCSSDEKLQLAKENGAEYLINSKTDDILTKVMEITDNKGVQAAFDSVG-KDTFHTTLAALKNKGTFVSFGNASGPVPpIKIS 274
                 78888**********************************555***********************.**********************9999989**** PP

                 HHHHTT-EEEEE-SSC...H CS
  ADH_zinc_N 101 nlllkeksilGsllgs...l 117
                  l+ k++++l   l+     
  CCD22786.1 275 LLTPKNIKLLRPSLYAytkD 294
                 ***99999977777663443 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   1.2e-17   4.2e-14       2     133 .]     208     345 ..     207     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 1.2e-17
                   T-SEEEETTSTTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----....S-EEE-CHHHCTTT-EEEE--GGG...-....-HH CS
  ADH_zinc_N_2   2 GAdevidyrtedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp...lsaallkpakkrkgrsvkyeflfsmkas...aqad 88 
                   GA+  i+++t+d+     + t+++gv++++d+vg++++ + +l++l+++G++vs g+ +    + +++ ++  ++ + ++ +++ + +++    ++ 
    CCD22786.1 208 GAEYLINSKTDDILtkvmEITDNKGVQAAFDSVGKDTF-HTTLAALKNKGTFVSFGNASgpvPPIKISLLTP-KNIKLLRPSLYAY-TKDpedWNKY 301
                   9999*****9999999999*******************.*******888*****996556885555555555.4455566666663.4443433333 PP

                   HHHHHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  89 ileelaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                     +el+ li+ G+l++ ++   +le+ ae  ++les++++GK Vl
    CCD22786.1 302 -TTELFSLIQTGALKIKINDAVSLEKYAELAKKLESRSTTGKFVL 345
                   .69****************************************98 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0     3e-12   1.1e-08       1      79 [.      51     125 ..      51     172 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 3e-12
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SSSHHHHTT-GG CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvvepliscgeCaaCkegeen 79 
                 p++++ik k+ag++  +  + kg   ++ +lp ilG E++G+v++ g ++k++++Gd+V+   + +c+ ++  k +++ 
  CCD22786.1  51 PNDIIIKNKYAGVNYIESYFRKG--IYPCALPAILGREASGVVVDKGTNIKNFEIGDKVAY--IGNCSMAQFTKIDNSM 125
                 589***************99999..9*********************************99..7778877777666654 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   6.3e-06     0.022       3      75 ..     167     244 ..     165     266 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.3e-06
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT......TSEEEEEE-TTTSHHHHHHHHHHHHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee......gakalaiqvDvtdreevealvekavkkl 75 
                 +lv  a++G G+ + + + ++Ga+v++v +s+ekl ++ake ++e       +++l+  + +td + v+a+++ + k++
  CCD22786.1 167 ILVYAAAGGAGLIFDQLIKARGAHVIAVCSSDEKL-QLAKENGAEylinskTDDILTKVMEITDNKGVQAAFDSVGKDT 244
                 8999***********************99999*99.5566655555776556779******************998876 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     6e-05      0.22      14      83 ..     180     251 ..     172     261 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6e-05
                 HHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSH.HHHHHHHHHH CS
      TrkA_N  14 aeeLse.ggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadaviaatgdd.eanilavlla 83 
                  ++L + +g +v+++ +++e+++ ++e+g+e+++ + td+ + + ++i + ++v aa ++  +++  ++l+a
  CCD22786.1 180 FDQLIKaRGAHVIAVCSSDEKLQLAKENGAEYLINSKTDDILTKVMEITDNKGVQAAFDSVgKDTFHTTLAA 251
                 56677767767*****************************999999**********9998844444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2537.15
//
Query:       CCD22787.1  [L=626]
Description: hypothetical protein NDAI_0A06330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.041   12.6   0.2      0.064   12.0   0.2    1.2  1  Prog_receptor  Progesterone receptor


Domain annotation for each model (and alignments):
>> Prog_receptor  Progesterone receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   3.6e-06     0.064      15      66 ..     282     334 ..     271     356 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.6e-06
  Prog_receptor  15 aGgaPsptevgspllgrrdagpfqas.qtsdassvvsaipisldgllfprscq 66 
                     G aPs t++ sp+l    a  +    q s +s  vs+i +s d l f++++ 
     CCD22787.1 282 VGHAPSMTKLHSPNLFEDKAALLDHClQISSSSDSVSTIELSNDNLSFSERSE 334
                    599**************999999875499*******************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4720.52
//
Query:       CCD22788.1  [L=576]
Description: hypothetical protein NDAI_0A06340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3965.22
//
Query:       CCD22789.1  [L=270]
Description: hypothetical protein NDAI_0A06350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2121.66
//
Query:       CCD22790.1  [L=383]
Description: hypothetical protein NDAI_0A06360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-31  106.3   0.0    4.2e-30  104.1   0.0    2.0  2  Acyltransferase  Acyltransferase
    9.5e-14   51.3   0.4    1.7e-13   50.5   0.4    1.4  1  Acyltransf_C     Acyltransferase C-terminus


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.088   7.9e+02      70     104 ..      43      80 ..      20     106 .. 0.66
   2 !  104.1   0.0   4.7e-34   4.2e-30      13     135 .]     106     268 ..      80     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.088
  Acyltransferase  70 idRksnaraagslenise...lleegklvviFPEGtrs 104
                      i+ ++ +r++  l+++++   ++ +  l ++ P+G r 
       CCD22790.1  43 ITPTNPQRRQHLLDYTKRlfiVILATILAIVAPSGVRI 80 
                      44466777777777777777544454557777777443 PP

  == domain 2  score: 104.1 bits;  conditional E-value: 4.7e-34
  Acyltransferase  13 kgpailvaNHqsylDvlllwlllyksn.gprnvviiakkellsipllgflmrllgfifidR.................ksnaraagslenisel 88 
                      ++ +i ++NHq+y+D+++lw+l+y+sn g  nv+i++kk+l +ipllgf+m++++fif++R                 ++  r  +  e+ +++
       CCD22790.1 106 QNHSISICNHQIYTDWIFLWWLAYTSNlG-GNVYIMLKKSLENIPLLGFGMKNFDFIFMSRkwindkltlerqlgalnEKSTRLDNPNEQDLKK 198
                      567899*********************87.*******************************888888888888877665555555555555567 PP

  Acyltransferase  89 leegkl.vviFPEGtrsre...................gellpfkkGlvrlaakak...kgvpivPvais 135
                      ++ +++ +++FPEGt+++                    + llp+ +Gl+++++++    + +++v++++s
       CCD22790.1 199 VHDEPYnLILFPEGTVLSPttrskslsygqkigrepfsTVLLPHETGLRFSLQNLQstlDILYDVTIGYS 268
                      7777999*******99999999999*********9986666**************9999999*****996 PP

>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.4   1.9e-17   1.7e-13       2      55 ..     286     343 ..     285     360 .. 0.88

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 1.9e-17
  Acyltransf_C   2 lLsG.kpsevhiyvrripleevPed.eeelaeWlhelfeeKDklleeFyktgtFe..p 55 
                   +L+G  p++v+i++r +++e++P + e++ ++Wl++++eeK kll+ +yk+g+F+  p
    CCD22790.1 286 FLEGhYPKMVDIHIRAFNIEDIPFHdETKFSKWLYKVWEEKNKLLNDYYKQGSFDldP 343
                   689999*****************9989***************************7552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2994.27
//
Query:       CCD22791.1  [L=673]
Description: hypothetical protein NDAI_0A06370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-54  183.4   0.0    6.7e-54  183.1   0.0    1.1  1  AMP-binding    AMP-binding enzyme
     0.0021   19.0   0.1     0.0038   18.2   0.1    1.5  1  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.1   0.0   7.5e-58   6.7e-54       3     422 ..      84     530 ..      82     531 .. 0.79

  Alignments for each domain:
  == domain 1  score: 183.1 bits;  conditional E-value: 7.5e-58
                  HHHHHSTTSEEEEE........CCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHH CS
  AMP-binding   3 eqaaktpdkvalvd........sgegqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayile 91 
                  +q++ + d+ a+ +        + e +++TY+e ++ v r+++ L+ + +vk+gd Va+ + n p +++++l ++ +Ga+++ ln ++  + l + l+
   CCD22791.1  84 KQVELNGDRLAIRYakplakkgEYELESFTYKETYDIVLRMSHILTyKYNVKSGDYVALDCTNKPLFLFLWLSCWNIGAIPAFLNYNSVGKPLVHSLK 181
                  577778888888778888887777889*********************************************************************** PP

                  HHTESEEE.E.TCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHH CS
  AMP-binding  92 dseakvli.a.tvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlva 186
                   s+++ ++ + +  se  +++ +e++ +l+ v+l + ld+++l      +++    ++ ++ + ++ l+    a++iYTSGTTG PK +++s r ++ 
   CCD22791.1 182 ISDITQVFiDpDA-SEPiMKSEEEIKNELPNVRLNY-LDENDLMSVILNPSSPTFLQE-DELRSPKDLTDFKAAMLIYTSGTTGLPKSAIMSWRKAAI 276
                  ********63332.3343666667777777776654.554444433222222222222.235567789999*************************** PP

                  HHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCHHHHCCGTT CS
  AMP-binding 187 nvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaakkakdlss 284
                   ++ +       +++++vv++ +pl+h+++  l+++++l++G+++ +++k++a+  ++++++    ++t+i++v +v+++ll+ +  k        s 
   CCD22791.1 277 GCQLF--GYVLHMNNESVVFTGMPLFHSTAALLGVCAVLSQGGCIAVANKFSAT--NFWKQAYL-TEATHIQYVGEVCRYLLHTPVSK------YESI 363
                  99996..444668889999999*****************************995..58877777.9*****************87666......3344 PP

                  -SEEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEE....CHCTTTCTSTTS-B.EE-TTEEEEEE.-TTTSCBEE...........TTSE CS
  AMP-binding 285 lrlvllggeplspellrffralfge.evlegYGlTEttgvvtv....lpleedkkklgsvG.kplpgvevkiv.Deetgepvp...........dgee 364
                  +r+ ++ g+ l+p+++++fr++f    + e Y  TE+  ++t         + +++ g++  + l  ++  ++ D+++   v             ge+
   CCD22791.1 364 HRVKVAYGNGLRPDIWQAFRERFNIeVIGEFYAATEAPFATTSfqkgTFGVGACRNYGTIIqWFLSFQQTLVKmDPNDDTVVYrnkkgfcevapIGEP 461
                  7777899****************9988************9976677733355555555554244444444444455544443245566666666**** PP

                  EEEEEEET......TS-SEBTT-HHHHHHHEEE....TCC.EEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 365 Gellvrgp......gvmkgYlkkpeataeafds....egr.wlrTGDlgrldedGyleivgRkkdlikl 422
                  Ge+l+r        + ++gYl+++ +t++++      +g+ w+r GDl + d+ G  ++++R  d++ +
   CCD22791.1 462 GEMLMRIFfprkpeTSFQGYLGNEMETKSKVLRnvfrNGDaWYRCGDLLKADKYGLWYFIDRMGDTFRW 530
                  ****87432234478*********99999988678864666***********99************987 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   4.2e-07    0.0038       9      76 .]     548     625 ..     539     625 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.2e-07
                    STT.EEEEEEE-----.TTS---EEEEEE---....---.....HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   9 hpa.VaeaaVvGvpde.vkGealvafVvlkdg....sea.....leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                     p+ +++++VvG++ +  +G+a  a++ l+++    s +     + ++  a + + l++ya p  v+fv+e+ +t + K
     CCD22791.1 548 NPEkISQVVVVGIKVPkYEGRAGFAVIKLHADvdqiS-DqekinILNKTLAGLQESLPKYALPLFVKFVNEILMTDNHK 625
                    34359***********777788888888876544331.24545644444455588*****************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.38
# Mc/sec: 5318.91
//
Query:       CCD22792.1  [L=302]
Description: hypothetical protein NDAI_0A06380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-56  190.7   6.6    2.2e-56  190.7   6.6    1.6  2  Fig1      Ca2+ regulator and membrane fusion protein Fig1
  ------ inclusion threshold ------
       0.64   10.2   0.0       0.64   10.2   0.0    3.0  3  CCSMST1   CCSMST1 family


Domain annotation for each model (and alignments):
>> Fig1  Ca2+ regulator and membrane fusion protein Fig1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.0       0.6   5.4e+03      84      95 ..      23      34 ..      13      47 .. 0.50
   2 !  190.7   6.6   2.5e-60   2.2e-56       5     188 .]      67     267 ..      63     267 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.6
        Fig1 84 vaiiLtlllfll 95
                v++i+ ++ +l+
  CCD22792.1 23 VITIFLTIFLLI 34
                222222222333 PP

  == domain 2  score: 190.7 bits;  conditional E-value: 2.5e-60
        Fig1   5 sanstggleelevrvGYlGvCvdkspk.........sliC..rkksnatelasllsl...........sssssskstsdplnlvelakkfsdnvvhpyl 81 
                 s n+t+gle + +r+G++GvC+++ p+         + iC  rk+ ++ +l ++ls+            ++++ ++t+ +ln++e+a+ fs +v hpy+
  CCD22792.1  67 SGNKTTGLEDVVIRAGFMGVCIESVPRvynlqnqtlTSICypRKNLSNLSLFTDLSIelfnipsasssTNKTTMNQTPVKLNILEIAQLFSVKVLHPYI 165
                 4455699999************************999***99999999999999999*******997666666677777******************** PP

        Fig1  82 lmvaiiLtlllfllllyfplgseipllPfkskavskvalvlsflllllwlvgalwqhvassaastlveeasmgivkskvGkkaealgWfafaflllvcl 180
                 lm++iiLt+++f+l+ly++    ip lPf ++ v+ ++l+ls++l+l+w++ga+w+h+a++a+ ++v++asmgi+k+++Gkka +++Wf+fafll++c+
  CCD22792.1 166 LMATIILTIIMFILILYVT----IPNLPFREY-VNIFLLLLSPVLVLVWGFGAIWTHIAIKASYKFVPAASMGIIKVTKGKKASTMSWFSFAFLLIDCV 259
                 *****************98....*********.****************************************************************** PP

        Fig1 181 glwvlilr 188
                 +lw+l+lr
  CCD22792.1 260 ILWALYLR 267
                 ******97 PP

>> CCSMST1  CCSMST1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.6      0.18   1.6e+03      34      45 ..      22      33 ..       5      37 .. 0.75
   2 ?   -1.3   0.2      0.29   2.6e+03      33      46 ..     169     182 ..     133     185 .. 0.77
   3 ?   10.2   0.0   7.2e-05      0.64      10      61 ..     228     277 ..     222     290 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.18
     CCSMST1 34 lvislslaaflv 45
                 vi++ l++fl+
  CCD22792.1 22 NVITIFLTIFLL 33
                478899999987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.29
     CCSMST1  33 vlvislslaaflvY 46 
                  +++++ + ++++Y
  CCD22792.1 169 TIILTIIMFILILY 182
                 45666777777777 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 7.2e-05
     CCSMST1  10 kAakwkveeslggkqkeerpwykvlvislslaaflvYFcilReendlDeaLe 61 
                 +Aa++ + +  +gk+ +++ w+ +  +   +  ++++  +lR+  +lDe+++
  CCD22792.1 228 PAASMGIIKVTKGKKASTMSWFSFAFLL--IDCVILWALYLRDRKKLDEKID 277
                 67887777777788877999*9955544..4566779999*********994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1070  (0.0596798); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2192.49
//
Query:       CCD22793.1  [L=310]
Description: hypothetical protein NDAI_0A06390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-70  238.4   5.1    1.3e-70  238.3   5.1    1.0  1  ATP-synt  ATP synthase


Domain annotation for each model (and alignments):
>> ATP-synt  ATP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.3   5.1   7.5e-75   1.3e-70       1     278 [.      35     308 ..      35     309 .. 0.90

  Alignments for each domain:
  == domain 1  score: 238.3 bits;  conditional E-value: 7.5e-75
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHCEHHHHTTT..SSG.S....SSEEEEEEE--SSSSSTTHHHHHHHHH CS
    ATP-synt   1 slkeikrRiksvkstkkItkAmkmVaaaklrkaqealeaarpyaekleevlealakreeeekhpllke...eekkvllivitSDrGLcGgfNsnvikka 96 
                 +lke+++R+ks+k+++kItk+mk+Va+++l+ka++a  +a++  e+ ++++e+        +++l++e   e  k l+i+itSD+GLcG+++s +++k+
  CCD22793.1  35 TLKEVETRLKSIKNIEKITKTMKIVASTRLSKAEKAKVSAKRVDEADRQFYENAK------TKQLISEdstEPPKELIIAITSDKGLCGAIHSHLARKV 127
                 69***************************************************93......334444433345589*********************** PP

                 .HHHHHHHHTTTETEEEEESHHHHHHH..HHSS.EHHTTCE-TS.S--HHHHHHHHHHHHSHHHTTSBSEEEEEEEEECCTSEEEEEEEEESST...HC CS
    ATP-synt  97 .eklieelkkegevklvvvGkkgreyf..krkvevqleftgvsk.kptfeeaseiaeeildlyeegeideveivynkfksaisqeptvekllplekeee 191
                  ++li++     ++++v++G+k+r+++  ++  +v+  ++gv+k +ptfee s+i+++i+ + +++++ +++i+yn  +s++s+e + + ++     e+
  CCD22793.1 128 rSHLIDA----PNADVVAIGDKIRMQLlrSHPSNVKIGINGVGKdAPTFEESSAIVDKIITELNARQYPKISIYYNDPISSLSFEAKNKLMFTPAAIEQ 222
                 6677754....2579**********99855577777778999999*********************************************999656666 PP

                 S..SSTSEESS.HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
    ATP-synt 192 kkekseyefepdeeevleellpeylasliyrallesaasEqaaRmtaMdnAtknakelidkltleyNraRQaaITqELieIvsGaeA 278
                 + +  ++++++d  +v  +l++++++++i++a+++ +a+E +aR++aM+nA+kna+e+i+k++++yNr+RQa+IT+EL++I++Ga+ 
  CCD22793.1 223 SPALGKFDIDND-ANVPLDLFEYTFTNQILTAMANGYAAEISARRNAMENASKNAGEMINKYQILYNRTRQAVITNELVDIITGASI 308
                 777778888777.99*********************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1217  (0.0678789); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2373.11
//
Query:       CCD22794.1  [L=346]
Description: hypothetical protein NDAI_0A06400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-13   49.8   0.0    5.3e-12   46.3   0.0    2.3  2  Methyltransf_25  Methyltransferase domain
    4.8e-12   45.9   0.0    7.2e-12   45.3   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    5.5e-10   39.2   0.0    1.5e-09   37.8   0.0    1.6  2  Methyltransf_31  Methyltransferase domain
    8.1e-10   39.2   0.0    8.9e-09   35.9   0.0    2.2  2  Methyltransf_11  Methyltransferase domain
    3.9e-07   30.1   0.0    8.9e-07   28.9   0.0    1.7  1  Methyltransf_23  Methyltransferase domain
    1.3e-06   27.6   0.1    1.7e-06   27.2   0.1    1.2  1  Methyltransf_9   Protein of unknown function (DUF1698)
    2.4e-05   24.0   0.0    4.1e-05   23.2   0.0    1.3  1  MTS              Methyltransferase small domain
    3.6e-05   23.2   0.0      5e-05   22.7   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase
    8.4e-05   22.5   0.0    0.00015   21.7   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
    0.00025   21.7   0.0    0.00052   20.7   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
    0.00039   19.8   0.0    0.00078   18.8   0.0    1.4  1  Methyltransf_2   O-methyltransferase domain
    0.00058   19.6   0.0     0.0009   19.0   0.0    1.3  1  Methyltransf_16  Lysine methyltransferase
     0.0055   16.8   0.0     0.0099   16.0   0.0    1.4  1  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.027   14.4   0.0    1.5  1  Methyltransf_32  Methyltransferase domain
      0.022   14.1   0.0      0.032   13.6   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      0.027   14.2   0.0      0.041   13.6   0.0    1.2  1  Met_10           Met-10+ like-protein
      0.095   12.4   0.0       0.14   11.9   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.095   12.3   0.0       0.15   11.7   0.0    1.3  1  Cons_hypoth95    Conserved hypothetical protein 95
       0.12   12.2   0.0       0.23   11.3   0.0    1.4  1  PRMT5            PRMT5 arginine-N-methyltransferase


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   5.6e-15   5.3e-12       1      77 [.      62     139 ..      62     159 .. 0.84
   2 ?    1.0   0.0      0.73   6.9e+02      22      67 ..     187     239 ..     175     249 .. 0.70

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 5.6e-15
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBSSSTTTEEEEEEEST.GGGS CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlpfedgsfDlvvssga.lhhl 77 
                      vLd+GcGtG l++ +ak+ g+++v+gvD+s + +e are +e +g+  ++++++g++ed++++ +++D+++s  + + +l
       CCD22794.1  62 VLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMARELVELNGFsdKITLLRGKLEDVELPFKKVDIIISEWMgYFLL 139
                      9*****************.69********9.689*******99**9*************999999*******54434444 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.73
                      SEEEEEESSHHHHHHHHHHHHH....TTT....TEEEEESBCCGBSSSTTTEEE CS
  Methyltransf_25  22 akvtgvDiseemleaareraee....egl....nvefvqgdaedlpfedgsfDl 67 
                      ++v+g+D+s+    ++re + +      l    ++++++ d++++ +ed sf +
       CCD22794.1 187 HDVYGFDYSPFIPLIMREPIVDtvesT-LvnttRCKLIEFDLNTVTLEDLSFEA 239
                      678888888887777776555444321.13445888888888888888888876 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   7.7e-15   7.2e-12     161     233 ..      58     132 ..      47     185 .. 0.83

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 7.7e-15
        PrmA 161 egeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk....eekadvivaN 233
                 +++ vlDvG+G+GiL++ aak gak+v++vD+ ++ +++a+e +elN+ ++k+++ l ++l +     +k+d+i++ 
  CCD22794.1  58 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-IEMARELVELNGFSDKITL-LRGKLEDvelpFKKVDIIISE 132
                 5689****************************987.9***************977.333332222345899***986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.6e-12   1.5e-09       3      82 ..      58     136 ..      57     177 .. 0.80
   2 ?   -2.7   0.0         5   4.7e+03      30      39 ..     188     197 ..     175     198 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.6e-12
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsn...e 82 
                      k++ vlD+GCGtG l+  +a + g  ++v+G+D+s   ie Are  + +g++  +++ +g  e+ e  l  +k+D+i+s     
       CCD22794.1  58 KDKIVLDVGCGTGILSMFAA-KHG-AKHVIGVDMS-SIIEMARELVELNGFSdKITLLRGKLEDVE--LPFKKVDIIISEwmgY 136
                      5778****************.544.589******9.58*************99***********99..66679*****975552 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5
  Methyltransf_31  30 evvGiDisee 39 
                      +v+G+D+s++
       CCD22794.1 188 DVYGFDYSPF 197
                      5999999985 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   9.5e-12   8.9e-09       1      74 [.      63     138 ..      63     162 .. 0.83
   2 ?    0.8   0.0      0.86   8.1e+02      19      64 ..     187     239 ..     175     245 .. 0.67

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 9.5e-12
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTSS-TT-EEEEEEES-CCC- CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklpfednsfDlvvssevlhhv 74 
                      LdvGcGtG+l+   ak+g ++v+gvD+s   +++a+e ++ +g+  k++++++ +e++ ++ +++D+++s ++  ++
       CCD22794.1  63 LDVGCGTGILSMFAAKHGaKHVIGVDMS-SIIEMARELVELNGFsdKITLLRGKLEDVELPFKKVDIIISEWMGYFL 138
                      8*************************76.5688*************9**********9999999******9865554 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.86
                      SEEEEEES-HHHHHHHHHHCCHHT-.......EEEETTEECCCTSS-TT-EEE CS
  Methyltransf_11  19 arvvgvDlskemlklakekaseegl.......kvefvvadaeklpfednsfDl 64 
                      ++v+g+D+s+    + +e +++  +       ++++++ d+ ++ +ed sf +
       CCD22794.1 187 HDVYGFDYSPFIPLIMREPIVDTVEstlvnttRCKLIEFDLNTVTLEDLSFEA 239
                      67788887776555555555554445555555677888888888888888876 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   9.4e-10   8.9e-07      20      62 ..      56     114 ..      27     197 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 9.4e-10
  Methyltransf_23  20 lraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae................k 62 
                       ++++ vLd+GcGtGil+  ++++g+ +v+gvD+s++ +e+a+                +
       CCD22794.1  56 FFKDKIVLDVGCGTGILSMFAAKHGAkHVIGVDMSSI-IEMARelvelngfsdkitllrG 114
                      58899********************989*******87.7777666666666665555552 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   1.8e-09   1.7e-06     114     217 ..      57     162 ..       5     177 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.8e-09
                     -TT-EEEEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T.---EEEEEE..ES-GGG-S-HHHHHHHH CS
  Methyltransf_9 114 lkgrtildvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpe.leafdtvfs..mGvlyhrrsPldhllql 205
                     +k++ +ldvGcg+G   +  + +gak v+G+d s++  +  e v +l g   + +ll   +e+++   +  d++ s  mG +   +s ld++l  
      CCD22794.1  57 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMARELV-ELNGFSDKITLLRGKLEDVELpFKKVDIIISewMGYFLLYESMLDTVLYA 150
                     699***********99999999************9988877755.799999999***99*****9889******98889999999******9999 PP

                     HCTEEEEEEEEE CS
  Methyltransf_9 206 kdqlvkgGelvl 217
                     +d+   +G l++
      CCD22794.1 151 RDNYLVEGGLIF 162
                     998888887875 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   4.3e-08   4.1e-05      31     103 ..      58     131 ..      48     132 .. 0.69

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.3e-08
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTT.TSTTS-EEEEEE CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvle.eveekkfdlivs 103
                 +++ vlD+GcG+G+l++ +ak+  + +v  vd +   +e+a+e +e n+++  ++++   + + e++ kk+d+i+s
  CCD22794.1  58 KDKIVLDVGCGTGILSMFAAKHGAK-HVIGVDMSS-IIEMARELVELNGFSdkITLLRGKLEDvELPFKKVDIIIS 131
                 45669***************99888.566777664.4788888888888886544444433221333568888886 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   5.3e-08     5e-05      64     132 ..      60     127 ..      41     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.3e-08
                 -EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEE CS
        CMAS  64 mtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvv 132
                 + +Ld+GcG G l + a+++   +v+g+ +S+   ++a++ v+  ++++k +++  + ed++ ++ +v 
  CCD22794.1  60 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMARELVELNGFSDKITLLRGKLEDVELPFKKVD 127
                 679*****************8889*******7.689*************************99777653 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.6e-07   0.00015      14      95 ..      58     138 ..      49     154 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.6e-07
  Methyltransf_18  14 kgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniekagledkievrlsdGleklk.eee.vdtvviaGmGgel 95 
                      k+++v+D+G+  g+l+++++k+g ak+vi +D++ + +e a+e +e +g++dki++  ++ le ++ + + vd+++   mG  l
       CCD22794.1  58 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMARELVELNGFSDKITLLRGK-LEDVElPFKkVDIIISEWMGYFL 138
                      4789**************99765.78******97.689****************997776.67666555558888888888655 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   5.5e-07   0.00052       1      97 [.      63     159 ..      63     161 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5.5e-07
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.ssfDlvv...asnvlhhlkdirevldnir 90 
                      L++GcGtG l++  +++   ++++gvD s+     a+e    ++  + ++++l    l+d + + +++D+++   +  +l +   ++ vl    
       CCD22794.1  63 LDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIE-MARELVELNG--FSDKITLLRGKLEDVELPfKKVDIIIsewMGYFLLYESMLDTVLYARD 152
                      8*******999999999.888999****97655.4444444333..455666666666666555689999995555555555555556665555 PP

  Methyltransf_12  91 klLkpgG 97 
                      + L+ gG
       CCD22794.1 153 NYLVEGG 159
                      6666666 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   8.2e-07   0.00078      47     135 ..      42     133 ..      20     141 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8.2e-07
                     HHHHHHH.HHHSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEEEEE-HHHHHHHHHHS.-----TTEEEEES-TTTS---..--SEEEEES CS
  Methyltransf_2  47 sslvakk.vleafdleglkslvDvGGGtGalakaivsayPtikvivfDlpeVveaAkehl.sageeervefvgGdffkdslP..eaDaillkr 135
                      +l  ++ ++++ d+ + k ++DvG GtG l  + ++++   +vi  D+++++e A+e +   g +++++   G + + +lP  + D+i+ ++
      CCD22794.1  42 RTLSYRNaIIQNKDFFKDKIVLDVGCGTGIL-SMFAAKHGAKHVIGVDMSSIIEMARELVeLNGFSDKITLLRGKLEDVELPfkKVDIIISEW 133
                     455555415677779999***********76.67888899999****************9667899****************98889888666 PP

>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.6e-07    0.0009      41     103 ..      53     112 ..      29     149 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.6e-07
  Methyltransf_16  41 ganelsklsvlELGsGtGlvGlavaellpeakviltDleellellkknielnknalkskvkve 103
                      +++ ++++ vl++G GtG+  + +a++ +  +vi  D++ ++e+ ++ +eln+   ++k++  
       CCD22794.1  53 NKDFFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMARELVELNG--FSDKITLL 112
                      455678999*****************9.8899999****************66..99998754 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     1e-05    0.0099      16      60 ..      54      95 ..      41     149 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1e-05
                HT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHH CS
        FtsJ 16 fklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmapl 60
                 + f ++k v+D+g+++G  s +++++ ga ++v++vD+ ++  +
  CCD22794.1 54 KD-FFKDKIVLDVGCGTGILSMFAAKH-GA-KHVIGVDMSSIIEM 95
                45.447899******************.88.99******998444 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.9e-05     0.027      22      68 ..      55      97 ..      39     128 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.9e-05
  Methyltransf_32 22 kesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekae 68
                     +  +++ v+DvG+G g Ls   a    +   +v+g+d+++  +e a+
       CCD22794.1 55 DFFKDKIVLDVGCGTGILSMFAAK---HGAKHVIGVDMSS-IIEMAR 97
                     55567889*************999...6688******975.445555 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.4e-05     0.032      37     119 ..      48     128 ..      18     199 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.4e-05
                      HHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-TTS-T-EEE CS
  Ubie_methyltran  37 kfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLpfeddsfDv 119
                      + +++ +   + + vlDv +Gtg l++  +++     +v+++D++ ++++++++ ++ +g++ +i +l ++ e+++   +  D+
       CCD22794.1  48 NAIIQNKDFFKDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMARELVELNGFSdKITLLRGKLEDVELPFKKVDI 128
                      555555556667789********98876655543..4799***98.689************989*****988765544444444 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.3e-05     0.041      98     173 ..      56     130 ..      40     160 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.3e-05
                 --TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---.TT-EEEEE CS
      Met_10  98 veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir.eqladrvv 173
                 + ++++V+dv  G G +++ +ak++  k v+++d+  + +++ +e ++lN  +++++ + +  ++v    +++d ++
  CCD22794.1  56 FFKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMS-SIIEMARELVELNGFSDKITLLRGKLEDVELpFKKVDIII 130
                 67789******************875.56******7.579999*************999998888876445555555 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00015      0.14      73     123 ..      58     105 ..      21     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
                 TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTT CS
        PCMT  73 kgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldl 123
                 k + vL+vG+G+G+l+   a   g+k  v++++   +++e a++ ++ ++ 
  CCD22794.1  58 KDKIVLDVGCGTGILSMF-AAKHGAKH-VIGVDM-SSIIEMARELVELNGF 105
                 55679*********9865.55556666.899985.5788888888776665 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.15      35      93 ..      50     109 ..      38     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
                    HHCCC..HCC-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTT CS
  Cons_hypoth95  35 ilaae..iegarvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeet 93 
                    i++++  ++++ vLD+ +G+G l++ A+  gak+++ v++++  +++ +e +e  ++++++
     CCD22794.1  50 IIQNKdfFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMARELVELNGFSDKI 109
                    45555678999****************************986.456666666666666555 PP

>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00025      0.23      63     149 ..      57     137 ..      13     150 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00025
                 .-EEEEEEES-TTSHHHHHHHHHHHHHCCCEEEEEEEES-HHHHHHHH.HHHHHHTTCCGCEEEES-CCCCCHCC.-ECEEEE---BTT CS
       PRMT5  63 ekklvilvvGaGRGplvdralkaleetkvtkvkivavEKnpnavvtLq.kkvneekWeekveviksdmrelkaee.kvdllvsELLGSf 149
                  k+ ++l vG G G l   ++ a + +k    +++ v+   ++++ +  + v+ + +++k+++++  + +++ +  kvd+++sE +G f
  CCD22794.1  57 FKDKIVLDVGCGTGILS--MFAAKHGAK----HVIGVD--MSSIIEMArELVELNGFSDKITLLRGKLEDVELPFkKVDIIISEWMGYF 137
                 45566777777777664..333333333....333333..344444441456778899**************99759**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2447.52
//
Query:       CCD22795.1  [L=228]
Description: hypothetical protein NDAI_0A06410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-21   74.2   3.4    1.5e-20   73.0   3.4    1.7  1  PNP_phzG_C      Pyridoxine 5'-phosphate oxidase C-terminal di
    2.7e-10   40.3   0.0    4.2e-10   39.7   0.0    1.3  1  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.22   11.4   0.0    1.4  1  KdpC            K+-transporting ATPase, c chain


Domain annotation for each model (and alignments):
>> PNP_phzG_C  Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   3.4   2.6e-24   1.5e-20       1      43 []     186     228 .]     186     228 .] 0.97

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 2.6e-24
  PNP_phzG_C   1 WgGyrvvPeeiEFWqgrpsRlHdRfrYereeedgkWkierLsP 43 
                 WgG+r+vP eiEFWqgrpsRlHdRf+Y+r+ e++ W+i rL+P
  CCD22795.1 186 WGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTEHDPWEIVRLAP 228
                 ****************************999879********9 PP

>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0     7e-14   4.2e-10      13      84 ..      56     128 ..      40     132 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 7e-14
                     SEEEEEEEE.TTSEEEEEEEEEEEETTTTEEEEEEETTS.HHHHHHHHH-EEEEEEEETTGSEEEEEEEEEEEE CS
  Putative_PNPOx  13 kavvlATvd.edGrPnvspvllkagdgrdgivfatnads.rklrnleenprvallflddelgrgvrieGtaelv 84 
                     +a + +++  ++Gr++++++l+k++d r g+++++n  + rk+ ++++np+ a+ f++++l r+vr+eG  e v
      CCD22795.1  56 EAITFSSAElPSGRVSSRILLFKELDHR-GFTIYSNWGTsRKAMDIKSNPHGAINFFWKDLQRQVRVEGFTEYV 128
                     577788888899****************.99999997665*****************************76655 PP

>> KdpC  K+-transporting ATPase, c chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.6e-05      0.22      56     100 ..     131     175 ..     116     183 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.6e-05
                 ---SSS--------ST-TTT-------SS-HHHHHHHHHHHHHHH CS
        KdpC  56 ftsdkYfhgRpsavnynaaasggsnlgpsnpellerveervaalr 100
                  ts++Yfh+Rp   +  a +s  s++ ++ +el + v+++ ++++
  CCD22795.1 131 QTSERYFHTRPRGSKVGAWSSPQSQVLKDRQELEDLVKKNNERFA 175
                 4689************9**********************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1634.82
//
Query:       CCD22796.1  [L=728]
Description: hypothetical protein NDAI_0A06420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-205  684.0   0.6   2.3e-205  683.7   0.6    1.0  1  Carn_acyltransf  Choline/Carnitine o-acyltransferase


Domain annotation for each model (and alignments):
>> Carn_acyltransf  Choline/Carnitine o-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  683.7   0.6  1.3e-209  2.3e-205       3     586 ..      27     677 ..      26     678 .. 0.93

  Alignments for each domain:
  == domain 1  score: 683.7 bits;  conditional E-value: 1.3e-209
                      ------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHC.THHHHHHHHHHHHHSS....HT-STTTHHHHHHHHTTT--S-HHHHTBEEEE-G CS
  Carn_acyltransf   3 rLPvPkLedTleryleslkpllseeelekteklveeflk.geGpkLqerLraekek....ktsknwledwWedyaYleyrdplvlnsnpfllle 91 
                      rLP+P+LedTl+r+l+ ++pl++e++ +kt+k+v+++++ +  ++L+e+L +++++    k +++++e++W+d +Yley++++vln+npf++l+
       CCD22796.1  27 RLPIPPLEDTLQRFLARIEPLQDEKQNRKTKKIVNSVENiDLLKTLHEKLLQYDTNlanlKPESSFIEQFWYD-SYLEYDASVVLNVNPFFQLQ 119
                      8**************************************99*********88866667886678*********.******************** PP

                      CCCCT...........STCHHHHHHHHHHHHHHHHHHHHHHTT-S--TE.EETEE---GGGGGSSSEEEE--SSS-EEEEE--TSS---EEEEE CS
  Carn_acyltransf  92 ddpdp...........keknqqlkraAklilsalkfkkllrreelepdvikkgkplcmsqykrlfnttRiPgkekDklvkykkedkesrhivVl 174
                      ddp+              ++ q+kr++kl++s+lkf+k++r+++l+pd+++ gk l+m+qy++lf+++RiP  + +++ + ++ d++s+h++++
       CCD22796.1 120 DDPTItkeeilengpyGCHTLQIKRTSKLVISILKFIKQIRHNTLKPDLVRGGKSLSMDQYDKLFGSSRIPPGPGEQTCHLQT-DTTSHHVIIM 212
                      ***99***********9999999*************************9977899****************767777888776.789******* PP

                      ETTEEEEEECE.CECTTEE--HHHHHHHHHHHHHHHHCCG......----GGGGGGS-HHHHHHHHHHHCC-TCH.HHHHHHHHHCSS-EEEE- CS
  Carn_acyltransf 175 rkgqfYkvdvl.eddggrllspaelekqleeIlsdsekees.....aeepvgvlTtenRdewakareellksekk.NkeslelIesalfvvcLD 261
                      +k+qfY++dvl  +++ ++ + +ele++l++I++d ek+++     +  p+gv+Tte+R++w+++r+++ +++++ N+++l++I+salfv+cLD
       CCD22796.1 213 YKSQFYWFDVLdVNNEPIFETSDELEWNLYSIIMDVEKHKHhdeeeNLLPFGVFTTESRRVWSNIRDYIFHANDStNWKNLKIIDSALFVICLD 306
                      ***********97789899999***********66555555566677778******************77777777****************** PP

                      ---SS---HCCHHHHHHCT....................TCGC--TTBSEEEEE-TTS-EEEEE-STT--HHHHHHHHHHHHHCCHCTTTT--S CS
  Carn_acyltransf 262 despededeeelakqllhg....................sgtnRWfDKslqlivtknGkaglnfEHswaDgtvvlrlvedvltdsilkeakekn 335
                      d     ed++elak++l+g                    ++ nRW+DK lqlivtknGkag+nfEH+++Dg++vlrl++d++tdsil++a+e++
       CCD22796.1 307 DVIFGAEDNDELAKSMLCGtskieldqqkstvplniqsgTCLNRWYDK-LQLIVTKNGKAGFNFEHTGIDGHTVLRLATDIYTDSILSFAREIT 399
                      ****8888889*******8899**************************.********************************************9 PP

                      ......................----S-SSS..................-EEE-----HHHHHHHHHHHHHHHHHHCCEEEEEEEETS--HHHH CS
  Carn_acyltransf 336 ......................eekssssees..............lpepeklefkldeelkeaieeaetrldklisdldlkvlefkeyGksfi 393
                                            +        +               + p+ le+k+d+ l +++++aetr+++lis++++ +l+f+++G+ +i
       CCD22796.1 400 kdvpdifeaqmgsnnnkhhhhnQ--------KqfgvetktpnkanlITIPRTLEWKIDKFLLSSLHFAETRISDLISQYEFVTLDFEKFGSFHI 485
                      ********999987655444430........1455566667777786678******************************************** PP

                      CC.CT--HHHHHHHHHHHHHHHHHSS---EEEEEE-TTSTT--EEEEE---HHHHHHHHHH.HSSCTHCCHHHHHHHHHHHHHHHHHHHHTTTS CS
  Carn_acyltransf 394 kk.fklspDafiQmalQlAyyrlygklaatyEsastrkFrhGRtEtirsvteeslafvkam.dskasdeeklellrkAvkahskltkeaakGkG 485
                      k+ fk+spDaf+Q+++Q+Ayy+lygk+++tyE+a+t++F++GRtE+irsvt+ s++fvk++ d++a+de++++ l++ +k+hsk+t+e+++G G
       CCD22796.1 486 KSvFKCSPDAFVQQIFQIAYYALYGKFETTYEPAMTKLFQNGRTEAIRSVTPFSKRFVKSLfDKNATDEQRKQFLQESCKEHSKITRECSMGLG 579
                      *************************************************************88899**************************** PP

                      SHHHHHHHHHHHHHT--HHSS.-HHHHSHHHHHCT--SEEEEE...SSSEEEES--SSTT-EEEEEEEETC.EEEEEEETCTTS--HHHHHHHH CS
  Carn_acyltransf 486 vdrHLfaLkllakelesegeelpelFkdplykklnnwrLsTSqlsspalkgfGfgpvvpdGyGigYiikddsisfvisskkksetsserfaeaL 579
                      +drHL+aL+++++e  +++ +lp++Fkd +++ ln+++LsTS++++p+lk fGfgpv+++G+GigY+i+d+sis+v+ss+   +++++rfa+ +
       CCD22796.1 580 QDRHLYALYCVWNEWYKDTLPLPPIFKDRSWTLLNTNVLSTSNCGNPCLKNFGFGPVTANGFGIGYVIRDNSISIVVSSR---HRQTKRFASLM 670
                      *************996678************************************************************7...89********* PP

                      HHHHHHH CS
  Carn_acyltransf 580 eealedi 586
                      e+++ +i
       CCD22796.1 671 EKSFLEI 677
                      ****998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5229.74
//
Query:       CCD22797.1  [L=1312]
Description: hypothetical protein NDAI_0A06430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-132  442.3   0.0   1.2e-132  442.3   0.0    1.8  2  Oxysterol_BP  Oxysterol-binding protein
    2.8e-14   53.0   0.1    1.7e-05   25.0   0.0    3.0  2  Ank_5         Ankyrin repeats (many copies)
    6.9e-13   49.0   0.5    2.1e-12   47.5   0.5    1.9  1  PH            PH domain
    3.6e-12   46.5   0.3    0.00031   21.2   0.1    3.6  3  Ank_4         Ankyrin repeats (many copies)
    5.7e-12   44.7   0.1     0.0016   18.8   0.0    4.3  4  Ank_3         Ankyrin repeat
    4.7e-10   39.9   0.0     0.0022   18.6   0.0    2.8  2  Ank_2         Ankyrin repeats (3 copies)
    8.7e-09   35.6   0.2    3.1e-08   33.8   0.2    2.0  1  PH_8          Pleckstrin homology domain
    3.5e-07   30.4   0.1      0.022   15.2   0.0    3.7  4  Ank           Ankyrin repeat
     0.0002   21.8   4.2     0.0025   18.2   2.3    3.5  2  PH_11         Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.2   2.9         9   1.8e+04     219     242 ..     842     865 ..     813     892 .. 0.46
   2 !  442.3   0.0  6.1e-136  1.2e-132       1     372 [.     922    1297 ..     922    1298 .. 0.94

  Alignments for each domain:
  == domain 1  score: -6.2 bits;  conditional E-value: 9
                   S-EEEEEEEETTTEEEEEETTSTT CS
  Oxysterol_BP 219 kevlyeisGkwdeelyikkkktek 242
                    +++ +++G  + +++++k + + 
    CCD22797.1 842 RKQQQSLNGDESANYNTQKDEVSM 865
                   222233333333333332222222 PP

  == domain 2  score: 442.3 bits;  conditional E-value: 6.1e-136
                    HHHCCHTTSTT-BCCCS---GGGEEEEEHHHHHHHCCTTCHHHHHHHC.SSHHHHHHHHHHHHHHCCCGCTSTSSSEEE---TT-EEEEEETTCE CS
  Oxysterol_BP    1 slwsilkkciGkDLskislPvffneplSlLqrlaedleyselLdkaakeddsleRlayVaaFalSsyastikrrlkKPFNPlLGEtfelvredkg 95  
                    slw +lk+++GkD+++++lPv+fnep+SlLqr++edleyselLd+aa+ ddsl Rl+y+  F+ Ssyasti +r++KPFNPlLGEt+e++r+dk+
    CCD22797.1  922 SLWGVLKSMVGKDMTRMTLPVTFNEPTSLLQRVTEDLEYSELLDQAASYDDSLLRLLYISVFTASSYASTI-GRVAKPFNPLLGETYEYSRPDKH 1015
                    79**********************************************999********************.9********************** PP

                    EEEEEEEEETTTTEEEEEEEECTEEEEEEEEEEEEE-SSEEEEEE-SEEEEEE...EEESEEEEEEE--EEEEE-TTTTS-EEEEEEEEEEEETT CS
  Oxysterol_BP   96 frfiaEQVsHhPpvsAfhaesegweldgeikvkskflgkslevkpeGtahlel...lkksgehYtwtkpttivhniivgklwvelsgeveitnhs 187 
                    frf++EQVsHhPp+sA+++es++w ++ge++v+skf g+ +++k+ G +++++   + + +e Yt++kp+ +v +i+vg++ v+++g+v+i nh+
    CCD22797.1 1016 FRFFTEQVSHHPPISATWTESPKWDFWGESYVDSKFNGRNFQFKHLGLWYIKMrpdNGSPEELYTFKKPNNTVIGILVGNPQVDNHGDVKIMNHT 1110
                    *****************************************************653344899********************************* PP

                    T--EEEEEEE---SSS---SSEEEEEEEETTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT....-BSXXGCGSSTTBCCCCCCH-----. CS
  Oxysterol_BP  188 tgdkakleFkkkglfsskksnkvegkvkdkkkevlyeisGkwdeelyikkkktekkeeeedasek....skvkekeeqeefeseklWkasplpka 278 
                    tg++++l+Fk++g+  s+ +++v+g+v++k+k+ ++ i G+w++++y kk++ +  ++e + +++    s+++++   ++ ++ ++Wka+p+p+ 
    CCD22797.1 1111 TGEYCILNFKARGWR-SSGAYEVRGEVFNKQKKCVWVIGGHWNDSIYGKKVTGK-GNTELSLEKTktaaSTATRRGPTTDGSKFLVWKAAPRPD- 1202
                    *************87.589*****************************776654.444444444433444888899999999999****88874. PP

                    ..GGG--HHHHCCT---.TT.GGS-TTBGGG-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT.----SSEEEEETTTTSSCEEEC-S-H CS
  Oxysterol_BP  279 eeyygftkfavtlNeieeke.kslaptDsRlRpDqraleegdideAeeeKkrlEekQRerrkereekk.ewkpkwFekekdpdtgeevwkykgey 371 
                      ++++t+fa+t N  +++  ++laptD+RlRpDqra+e+g++d A++eK+rlEekQR  rk re+++ e+ p+wF+ke +p+t+  +w+y+g+y
    CCD22797.1 1203 -APFHLTPFAITMNAPQPHLvPWLAPTDTRLRPDQRAMEDGRYDDAANEKHRLEEKQRGVRKYREANNlEYSPRWFTKEIHPVTKLPYWRYRGDY 1296
                    .8***************9889*******************************************888779************************* PP

                    H CS
  Oxysterol_BP  372 w 372 
                    w
    CCD22797.1 1297 W 1297
                    * PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   8.7e-09   1.7e-05       7      55 ..      99     148 ..      96     149 .. 0.87
   2 !   24.8   0.0   9.7e-09   1.9e-05      17      55 ..     208     247 ..     194     248 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 8.7e-09
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldl 55 
                  d+n++d +gntpLh+Aa + + +vv++Ll  ++ +  +t+++ l ++++
  CCD22797.1  99 LDINYQDVNGNTPLHLAAAQSRREVVLMLLrQPEINECITNKSDLVPVEM 148
                 699***************************88888777777777777775 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 9.7e-09
       Ank_5  17 n.tpLhvAakygaadvvrlLlargadlnltdsrGltaldl 55 
                   + Lh+ +++++ +++ +Ll++gad+  ++++G+t+ldl
  CCD22797.1 208 GdSLLHTFVRKRNIEMCSWLLKHGADPHRKNFDGKTPLDL 247
                 3389***********************************8 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.5     1e-15   2.1e-12       3     105 .]     312     408 ..     310     408 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 1e-15
                 EEEEEEEETSSSSCSEEEEEEEEE.TTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHH CS
          PH   3 keGwLlkkgsgkkkswkkrwfvLk.dsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWikai 100
                  +G+L+k ++    ++k rwfvL+ d++l+yyk+++ +k+k+ +gs++ls+c +       ++++k +fe++ + +++  ++ l+ ++ ee ++W+  i
  CCD22797.1 312 FKGYLKKFTNFAQ-GYKLRWFVLTsDGKLSYYKAPQAMKNKKCRGSLDLSSCYIHL-----NSTEKLKFEIIGTGNTR-ARWQLKGNNHEETNQWVCFI 403
                 6899999998887.**********5555**************************87.....9*********9997777.******************** PP

                 HHHHH CS
          PH 101 qsaik 105
                 qsai+
  CCD22797.1 404 QSAIR 408
                 **986 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   6.8e-07    0.0013      25      55 .]      99     128 ..      96     128 .. 0.95
   2 !   21.2   0.1   1.6e-07   0.00031       5      55 .]     173     228 ..     171     228 .. 0.91
   3 !   18.9   0.0   8.6e-07    0.0017       2      40 ..     209     246 ..     208     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 6.8e-07
       Ank_4  25 adinaqdnrsGetalhiAakrgnveilklLl 55 
                  din+q + +G+t+lh Aa  ++ e++ +Ll
  CCD22797.1  99 LDINYQ-DVNGNTPLHLAAAQSRREVVLMLL 128
                 69****.*********************997 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 1.6e-07
       Ank_4   5 LhyaaisgrlelvrlLlek..gad...inaqdnrsGetalhiAakrgnveilklLl 55 
                 +h a++++++++++ +l++  ++d   in+ d +sG+++lh  +++ n+e+  +Ll
  CCD22797.1 173 IHDAFEKNDIKTLETILNTprNVDvldINYFDQKSGDSLLHTFVRKRNIEMCSWLL 228
                 89***************9763566666****99**********************8 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 8.6e-07
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalh 40 
                  ++Lh  + + ++e++ +Ll +gad+++  n +G t+l+
  CCD22797.1 209 DSLLHTFVRKRNIEMCSWLLKHGADPHRK-NFDGKTPLD 246
                 579*************************9.*99****96 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.087   1.7e+02       5      24 ..      60      79 ..      57      85 .. 0.87
   2 !   18.8   0.0   7.9e-07    0.0016       1      25 [.     107     131 ..     107     135 .. 0.88
   3 !   17.3   0.0   2.5e-06    0.0049       2      30 ..     208     235 ..     207     236 .. 0.95
   4 ?   -3.2   0.0         9   1.8e+04       9      30 ..     275     297 ..     274     298 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.087
       Ank_3  5 pLhlAarsgnleivkfLlen 24
                +LhlA+  +++++++ +++n
  CCD22797.1 60 LLHLAVQVAPTPLIEKIINN 79
                8****************995 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 7.9e-07
       Ank_3   1 nGetpLhlAarsgnleivkfLlenk 25 
                 nG+tpLhlAa + + e+v +Ll+++
  CCD22797.1 107 NGNTPLHLAAAQSRREVVLMLLRQP 131
                 7*********************944 PP

  == domain 3  score: 17.3 bits;  conditional E-value: 2.5e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G ++Lh+ +r  n+e++ +Ll+ +gad++
  CCD22797.1 208 GDSLLHTFVRKRNIEMCSWLLK-HGADPH 235
                 889*******************.9***97 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 9
       Ank_3   9 Aarsgnl...eivkfLlenkgadvn 30 
                 A++ +++   e ++++le k +  n
  CCD22797.1 275 AIKKNSFtesE-LRMILE-KAVKNN 297
                 67777774333.999999.666655 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.4e-06    0.0028      48      80 ..     102     134 ..      33     139 .. 0.74
   2 !   18.6   0.0   1.1e-06    0.0022       4      57 ..     176     245 ..     173     251 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.4e-06
       Ank_2  48 h.adndgrtpLhyAarsghleivklLlekgadin 80 
                 + +d +g+tpLh+Aa +++ e+v +Ll +  +in
  CCD22797.1 102 NyQDVNGNTPLHLAAAQSRREVVLMLL-RQPEIN 134
                 136688999999999999999999999.334544 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1.1e-06
       Ank_2   4 AakngnlelvklLl...eg...adpn..k..ngktaLhyAakngnleivklLleh......adndgrtpL 57 
                 A ++++ ++++ +l    +    d+n  +   g + Lh+++++ n+e++++Ll+h       + dg+tpL
  CCD22797.1 176 AFEKNDIKTLETILntpRNvdvLDINyfDqkSGDSLLHTFVRKRNIEMCSWLLKHgadphrKNFDGKTPL 245
                 555555566666665332322323345524699*********************99555444477****9 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.2   1.5e-11   3.1e-08       4      85 ..     316     403 ..     314     407 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.5e-11
        PH_8   4 lkkrrkklqgyakRfFvLdlksstlsYyrddnss...alrgkiplslaiisaneekr.ei.iidsGae..vWeLkasnekdfqeWveal 85 
                 lkk    +qgy+ R+FvL  + ++lsYy+  +     + rg++ ls + i  n++++ ++ ii +G     W+Lk++n+++ ++Wv  +
  CCD22797.1 316 LKKFTNFAQGYKLRWFVL-TSDGKLSYYKAPQAMknkKCRGSLDLSSCYIHLNSTEKlKFeIIGTGNTraRWQLKGNNHEETNQWVCFI 403
                 67788889**********.999******9765333349**********99998765424424667753226**************9765 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         9   1.8e+04       6      10 ..      61      65 ..      60      74 .. 0.79
   2 !   15.2   0.0   1.1e-05     0.022       1      23 [.     107     130 ..     107     152 .. 0.78
   3 !   10.7   0.0   0.00028      0.56       2      31 ..     208     238 ..     207     239 .. 0.90
   4 ?   -1.3   0.0       1.8   3.6e+03       1       8 [.     240     247 ..     240     274 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 9
                HHHHH CS
         Ank  6 LHlAa 10
                LHlA+
  CCD22797.1 61 LHLAV 65
                9*998 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.1e-05
                 TSBBHHHHHH...HHTTHHHHHHHH.T CS
         Ank   1 dGnTPLHlAa...tngkkriiklLL.h 23 
                 +GnTPLHlAa   ++    ++ +LL +
  CCD22797.1 107 NGNTPLHLAAaqsRRE---VVLMLLrQ 130
                 8********9776555...88888833 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00028
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G++ LH  ++  + +++++LL hGA+++ ++
  CCD22797.1 208 GDSLLHTFVRKRNIEMCSWLLkHGADPHRKN 238
                 8999**889989999************9876 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.8
                 TSBBHHHH CS
         Ank   1 dGnTPLHl 8  
                 dG TPL l
  CCD22797.1 240 DGKTPLDL 247
                 8*****76 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   2.3   1.3e-06    0.0025       2     104 ..     313     405 ..     312     406 .. 0.79
   2 ?    0.6   0.0      0.37   7.3e+02      37     103 ..     621     686 ..     598     688 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
       PH_11   2 kGylkkkgsk..aWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaalfkidsirssksddllleistetkifflkgdsneeteeW 98 
                 kGylkk  +   ++k rwf++  dg+L+yYk++++            ++++   dl+s     i+    +k +++ +   ++  + +lkg+++eet++W
  CCD22797.1 313 KGYLKKFTNFaqGYKLRWFVLTSDGKLSYYKAPQAMK---------NKKCRGSLDLSS---CYIHLNSTEKLKFEIIGTGNTRARWQLKGNNHEETNQW 399
                 7888875544459******9999********988766.........356666666655...56777777888888888888888899************ PP

       PH_11  99 vealke 104
                 v  +++
  CCD22797.1 400 VCFIQS 405
                 *99886 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.37
       PH_11  37 vkhviklSngseaklkadlisaalfkidsirssksddllleistetkifflkgdsneeteeWvealk 103
                 ++ vi + ng  ++  +d+i+  +  +++i +  sd   l++  +   + + +++++  + W+++++
  CCD22797.1 621 LHAVIEVLNGDGNISSTDVIET-RKSLNNIGNIFSDMNNLTAERDKVLVGMLTKERDINNVWIQSVR 686
                 6667888888888888888765.456788888888888999999999999*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1632  (0.0910257); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 8251.63
//
Query:       CCD22798.1  [L=630]
Description: hypothetical protein NDAI_0A06440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00047   20.4   8.6        0.1   13.1   0.4    3.2  2  zf-C2H2      Zinc finger, C2H2 type
  ------ inclusion threshold ------
      0.024   15.4   5.6        2.9    9.0   0.1    3.5  3  zf-C2H2_4    C2H2-type zinc finger
      0.027   14.5   4.3        3.4    7.8   0.1    3.4  3  zf-C2H2_6    C2H2-type zinc finger
       0.03   14.7   2.2        1.2    9.7   0.2    2.7  2  zf-H2C2_2    Zinc-finger double domain
       0.13   12.6   1.1         20    5.6   0.1    2.8  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.4   2.9e-05       0.1       6      23 .]     549     567 ..     549     567 .. 0.96
   2 !    9.3   2.6   0.00045       1.6       8      23 .]     590     606 ..     574     606 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.9e-05
                 TTEEESSHHHHHHHHHC.C CS
     zf-C2H2   6 CgksFkrksnLkrHirt.H 23 
                 C+  F+r+++L+rH++t H
  CCD22798.1 549 CSAQFSRSYDLTRHQNTiH 567
                 9999*************99 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00045
                 EEESSHHHHHHHHHC.C CS
     zf-C2H2   8 ksFkrksnLkrHirt.H 23 
                 k+F+r + L+rHi++ H
  CCD22798.1 590 KTFSRLDALTRHIKSkH 606
                 9*************999 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1    0.0008       2.9       6      24 .]     549     567 ..     536     567 .. 0.89
   2 ?   -1.4   0.1       1.7   6.2e+03       1       6 [.     574     579 ..     574     588 .. 0.86
   3 ?    7.4   0.2    0.0026       9.5       8      24 .]     590     606 ..     589     606 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0008
   zf-C2H2_4   6 CgksFsskkaLlrHlkthH 24 
                 C++ Fs++++L rH +t H
  CCD22798.1 549 CSAQFSRSYDLTRHQNTIH 567
                 **************99988 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.7
   zf-C2H2_4   1 fkCpiC 6  
                 f+C+ C
  CCD22798.1 574 FRCSEC 579
                 89**** PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0026
   zf-C2H2_4   8 ksFsskkaLlrHlkthH 24 
                 k+Fs+ +aL rH+k+ H
  CCD22798.1 590 KTFSRLDALTRHIKSKH 606
                 89*************99 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.068   2.4e+02       7      20 ..     549     562 ..     549     569 .. 0.87
   2 ?    4.6   0.1    0.0095        34       1      12 [.     573     584 ..     573     585 .. 0.82
   3 ?    7.8   0.1   0.00094       3.4       9      25 ..     590     606 ..     589     608 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.068
   zf-C2H2_6   7 CsksFpslqaLggH 20 
                 Cs++F+  ++L+ H
  CCD22798.1 549 CSAQFSRSYDLTRH 562
                 ***********999 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0095
   zf-C2H2_6   1 vheCsvCsksFp 12 
                 v++Cs+C k ++
  CCD22798.1 573 VFRCSECIKLLG 584
                 7******88766 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00094
   zf-C2H2_6   9 ksFpslqaLggHkksHr 25 
                 k+F+ l+aL+ H ks +
  CCD22798.1 590 KTFSRLDALTRHIKSKH 606
                 9***********99955 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   0.00032       1.2       1      22 [.     558     581 ..     558     582 .. 0.87
   2 ?    3.9   0.1     0.022        79       1      12 [.     597     609 ..     597     613 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00032
   zf-H2C2_2   1 nLrrHirk.Htgekp.yeCplCdk 22 
                 +L+rH+ + H ++k  + C++C k
  CCD22798.1 558 DLTRHQNTiHASKKTvFRCSECIK 581
                 699***977**99877******76 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.022
   zf-H2C2_2   1 nLrrHir.kHtge 12 
                 +L+rHi+ kH + 
  CCD22798.1 597 ALTRHIKsKHENL 609
                 79*****569765 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0056        20       6      23 ..     548     565 ..     547     571 .. 0.90
   2 ?    4.8   0.1    0.0098        35       9      24 ..     590     605 ..     589     605 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0056
                  TTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   6 lCdKyFksenaldnHlkS 23 
                   C+ +F+ +++l  H+++
   CCD22798.1 548 PCSAQFSRSYDLTRHQNT 565
                  6***************97 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0098
                  BBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   9 KyFksenaldnHlkSK 24 
                  K+F+   al  H+kSK
   CCD22798.1 590 KTFSRLDALTRHIKSK 605
                  99999**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1577  (0.0879581); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4340.48
//
Query:       CCD22799.1  [L=307]
Description: hypothetical protein NDAI_0A06450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.2e-101  339.6   0.2   1.4e-101  339.4   0.2    1.0  1  SAICAR_synt  SAICAR synthetase


Domain annotation for each model (and alignments):
>> SAICAR_synt  SAICAR synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.4   0.2  7.7e-106  1.4e-101       2     249 ..      20     284 ..      19     287 .. 0.94

  Alignments for each domain:
  == domain 1  score: 339.4 bits;  conditional E-value: 7.7e-106
                  EEE-SSEEEEE-SSTTEEEEEEESEEEECCCTEEEEETTHHHHHHHHHHHHHHHHHH.--BSEEEE.....................-SSSEEEEE-E CS
  SAICAR_synt   2 lyeGKvrdvYeledddklllvakDrisAfdvvlkeeipgKGkvltqlsafwfeklek.ipnhliksld......pe..........qlegrsmlvkkl 82 
                  +++GKvrd+Y++ ++++ll+va+DrisA+dv+++++ip+KG +lt+ls+fwf++l+  ++nhli+  d      p           ql++rsml+kk+
   CCD22799.1  20 INRGKVRDIYQV-NNETLLFVATDRISAYDVIMNNPIPEKGILLTKLSEFWFHFLSAdVKNHLIAIGDeifnhlPFvlyddlkyrnQLKNRSMLIKKC 116
                  789********9.778****************************************66******6555776555116677788899************ PP

                  EEESEEEEEEEE--HHH.......HH....HH..T--TT-EEEEEEEEEEE--CCCT.S-EE-HHHHH.HTT.-HHHHHHHHHHHHHHHHHHHHHHHH CS
  SAICAR_synt  83 kmlpvEvvvRgyltGslwkeykksgkvcgirlpeglkegeklpepiftpstKaeegehDeniseeevvealg.teeeaeeieelalavyekaaelaae 179
                  k++p+Ev+vRg+ltGs+w+eykk g+v+g+++p+glke++++++piftpstKae+g+hDeni++ee++++l+ + + ++++e+la+++y+k++e+ ++
   CCD22799.1 117 KLIPLEVIVRGFLTGSAWNEYKKFGTVHGTTMPQGLKESQEFDKPIFTPSTKAEQGKHDENITKEEAIQILNgDVKLIDDLEKLAIKLYSKCKEYSKT 214
                  *********************************************************************9999999********************** PP

                  TTEEEEEEEEEEEEETTTTEEEEES--.STTTEEEEETTT.....GGGB-STHHHHTT-STHHHHHHHHH CS
  SAICAR_synt 180 rgiilvDtKlEFGldeedgelvLaDevltpDssRfwdaetyeegkeqeslDKqfvRdwleeveekwkekl 249
                  +gii++DtK+EFG+de ++el+L+DevltpDssRfw+ e+y++gk+q+s+DKqf+Rdwl++++ +  e++
   CCD22799.1 215 KGIIIADTKFEFGIDEITKELILVDEVLTPDSSRFWSLENYQVGKSQDSFDKQFLRDWLTTNKLNGAEDV 284
                  *************************************************************999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2315.66
//
Query:       CCD22800.1  [L=236]
Description: hypothetical protein NDAI_0A06460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-30  105.3   0.4    4.5e-30  104.9   0.4    1.1  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD
  ------ inclusion threshold ------
      0.025   13.4   0.4      0.025   13.4   0.4    1.8  2  DUF2207      Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.4     5e-34   4.5e-30      10     182 .]      34     229 ..      23     229 .. 0.86

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 5e-34
  EMP24_GP25L  10 eekCfyeelkk.gtlltgsyqvtdgg.aaldvdlsvkdpdgngerlvkkkdresegdfsftakesgeykvCfdnsfstksskkvsfdiev..gseasd 103
                   ++C+y  ++  + ++++++ v++g+  ++++d++++ pd++ + ++++  +e++g++sf  +++geyk+Cf+ s   k+ + ++fd+     +e  +
   CCD22800.1  34 TPQCYYILTPDiECTISYYFSVQSGEdGNYNIDYKIYAPDDKYRPIIER-YNERQGEWSFVGEHKGEYKICFEASIPLKK-RIIDFDFNYdiAAE--K 127
                  689********************999767********************.666778******************988765.56666666521343..2 PP

  EMP24_GP25L 104 .....................ykdsak.keklet.leselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyLk 178
                                         d++  k+ l++ +e++++++e++l  ++r+++y+++r++r++ t++st +r++++s+  +l++++++++q+++L 
   CCD22800.1 128 nkgknvdvryerrlerknqkkLRDVKNgKDRLQSsIEDSIDNVERQLYMLERDLQYYKNRNTRNHYTVKSTGNRITIFSMYGILLIIAMCGIQLFVLE 225
                  35788888999999877766644555579999999**************************************************************9 PP

  EMP24_GP25L 179 rfFk 182
                    Fk
   CCD22800.1 226 WVFK 229
                  9986 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.7     0.034     3e+02      24      96 ..      50      76 ..      24     138 .. 0.61
   2 ?   13.4   0.4   2.7e-06     0.025     345     407 ..     144     219 ..     112     228 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.034
     DUF2207 24 tydf..dgsrhgiyrdrdlplrtydvdgsgnsvrikirddvtepyykessddgtlstgthtyeisYtvknavtky 96
                 y+f  +                                          s+++       +y i+Y+++ + +ky
  CCD22800.1 50 SYYFsvQ------------------------------------------SGED------GNYNIDYKIYAPDDKY 76
                3333332..........................................2222......3555556555554444 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.7e-06
     DUF2207 345 kskkkakkfkkalkkwksavkk.............kergyfdkkgkkklkklsalglgliilglilillallllvl 407
                 k++kk + +k+ +++++s++++             +  +y+++++ ++ +++   g  ++i+++++ill+++ +++
  CCD22800.1 144 KNQKKLRDVKNGKDRLQSSIEDsidnverqlymleRDLQYYKNRNTRNHYTVKSTGNRITIFSMYGILLIIAMCGI 219
                 222244444444444555444455555559999**9*******************************999776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1207  (0.0673211); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1780.77
//
Query:       CCD22801.1  [L=606]
Description: hypothetical protein NDAI_0A06470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-39  134.1   0.0    6.3e-22   78.2   0.0    3.8  2  Pkinase      Protein kinase domain
    3.6e-14   52.7   0.0    5.6e-10   38.9   0.0    2.7  3  Pkinase_Tyr  Protein tyrosine kinase
     0.0061   16.5   0.0      0.011   15.7   0.0    1.4  1  APH          Phosphotransferase enzyme family
  ------ inclusion threshold ------
       0.14   11.5   0.0         12    5.1   0.0    2.3  2  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   1.4e-25   6.3e-22       1     147 [.      74     229 ..      74     248 .. 0.85
   2 !   49.3   0.0   9.2e-17   4.1e-13     153     264 .]     360     555 ..     347     555 .. 0.84

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 1.4e-25
                 EEEEEEEEEESSEEEEEEEE..............TTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEB CS
     Pkinase   1 yekleklGeGsfGkVykave..............ketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyvegge 84 
                 y  + k+GeG+f++Vyka++              ++++k vA+Kki + +      +++ +E+++l  l  ++++  l ++++ kd+++ +l y +++e
  CCD22801.1  74 YDIIDKIGEGTFSSVYKAKDikgnitsrfwphfwNKSSKFVAIKKIYVTSSP----QRIYNELNLLYILTgSNKVAPLCDAMRMKDQVIAILPYYPHEE 168
                 66789*************9822222222222222345667777777766444....6899**********9999************************* PP

                 HHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEE CS
     Pkinase  85 ladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlake 147
                 + +++++   l+ + +k +++++l++l+++HskgiiHrD+Kp N+L++ e g   ++DFGla++
  CCD22801.1 169 FRTFYRD---LPIKGIKMYIWELLQALKFVHSKGIIHRDVKPTNFLFNpELGRGVLVDFGLAEQ 229
                 *****96...**************************************999999********97 PP

  == domain 2  score: 49.3 bits;  conditional E-value: 9.2e-17
                 SBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS................ CS
     Pkinase 153 kltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei................ 233
                 k  ++ gt+ ++APEvl k    s+k+D+Ws+Gvil++ll+++ p+ ++ ++++   e      ++ i+g +        +++                
  CCD22801.1 360 KRANRAGTRGFRAPEVLmKCGAQSTKIDIWSVGVILLSLLARRFPMFQSLDDTDSLLE------LCSIFGwK------AIKNCaaihglgfeinglhli 446
                 467899***********555666*********************99956555544444......44455432......222222224446677777888 PP

                 ..............................................................................-HHHHHHHHHHT-SSGCCSTT CS
     Pkinase 234 ..............................................................................seeakdllkkllkkdpkkRlt 254
                                                                                                  + +ll+ ++++dp+kR +
  CCD22801.1 447 kengfenglkefvyellnkecvagtfpeysvafetygylsqdlfdknsiepklpksnedlskqddyelkkyqqevwsdHYWCFQLLELCFEMDPMKRSS 545
                 99999***********************************************************************9999******************* PP

                 HHHHHTSGGG CS
     Pkinase 255 aeellqhpyl 264
                 a+ell++ ++
  CCD22801.1 546 ADELLHNTFF 555
                 ******9997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   1.3e-13   5.6e-10       3     159 ..      76     234 ..      74     259 .. 0.87
   2 !   10.4   0.0   6.3e-05      0.28     156     201 ..     355     401 ..     299     430 .. 0.78
   3 ?   -1.4   0.0      0.25   1.1e+03     235     256 ..     529     550 ..     493     552 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.3e-13
                  EEEEEEEESSEEEEEEEEET..........TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg..........ekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLl 89 
                  + +k+GeG+f++V++++  +            +k++  Va+K++  ++   + +++++e++++  l   +++  l  ++  +++++ ++ y ++ +++
   CCD22801.1  76 IIDKIGEGTFSSVYKAKDIKgnitsrfwphFWNKSSKFVAIKKIYVTS---SPQRIYNELNLLYILtGSNKVAPLCDAMRMKDQVIAILPYYPHEEFR 170
                  5689************9777799999998867888899******4443...3579***********8889999999***99***************** PP

                  HHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEE CS
  Pkinase_Tyr  90 kfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenk.vvkisDfGLardiekddey 159
                  +f r+       +k +  +++++ +++++++sk ++Hrd+   N L + +     + DfGLa++    d+y
   CCD22801.1 171 TFYRDL-----PIKGIKMYIWELLQALKFVHSKGIIHRDVKPTNFLFNPELgRGVLVDFGLAEQE--IDYY 234
                  **9985.....8899999*****************************9765477789*****976..3444 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 6.3e-05
                  SSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 156 ddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftl 201
                  + +  k+ ++     + apE+l+++   ++k D+Ws Gv+l  ++  
   CCD22801.1 355 ETRRMKRANRAGTRGFRAPEVLMKCGaQSTKIDIWSVGVILLSLLAR 401
                  33335556666677799****999875899**********9888764 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.25
                  HHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 235 yelmkkcweedpeeRptfselv 256
                   +l++ c+e dp +R +  el+
   CCD22801.1 529 FQLLELCFEMDPMKRSSADELL 550
                  589999*********9998886 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.4e-06     0.011     152     196 ..     185     227 ..     123     229 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.4e-06
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 +++ l al     +++++H+D +p N+l++p+ gr   ++Df++a
  CCD22801.1 185 IWELLQALKFV-HSKGIIHRDVKPTNFLFNPELGRG-VLVDFGLA 227
                 66666666664.89****************777775.699**987 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0027        12     159     182 ..     194     217 ..     181     231 .. 0.79
   2 ?    3.8   0.0    0.0065        29     205     252 ..     368     407 ..     319     423 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0027
  Kinase-like 159 nLqakglvhgkftvdnllldekgg 182
                    ++kg++h +++++n+l++++ g
   CCD22801.1 194 FVHSKGIIHRDVKPTNFLFNPELG 217
                  5689***************99844 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.0065
  Kinase-like 205 kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltl 252
                  +gf  pE+l + g          + k+d W +G+  +++ ++  P+ +
   CCD22801.1 368 RGFRAPEVLMKCGA--------QSTKIDIWSVGVILLSLLARRFPMFQ 407
                  66777777666333........4669*************999999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4439.89
//
Query:       CCD22802.1  [L=318]
Description: hypothetical protein NDAI_0A06480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-34  119.7  10.4    1.7e-34  119.0  10.4    1.4  1  Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase


Domain annotation for each model (and alignments):
>> Steroid_dh  3-oxo-5-alpha-steroid 4-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0  10.4   9.6e-39   1.7e-34       2     150 .]     163     318 .]     162     318 .] 0.94

  Alignments for each domain:
  == domain 1  score: 119.0 bits;  conditional E-value: 9.6e-39
  Steroid_dh   2 kmpllivakavl.fcvlnGllqarylsyyqpy.......aedylkkdrlllgivlfvlgmliniksdiiLr....elrkegetkykipr.gglFelvsa 87 
                 +mpl++++k+ + ++vlnGl+   y+ y ++         ++ ++ ++l+++i+lf+l++ +n++ + +Lr    ++ k+g +  ++p+  g+F+ ++a
  CCD22802.1 163 TMPLFNLFKNSFhYWVLNGLIALSYFGYGFVCqdskilsLYEKAHLQNLSTLIALFALSESWNFYVHLKLRrwgdYQLKKGTADQRLPLnEGIFTVFVA 261
                 89********999***************99987788888444455589***********************99998889999******999******** PP

  Steroid_dh  88 pnyfgEilewigyalvtkslaalaFalftvlnltvraaahhkwykkkfekYpksRkiliPfvf 150
                 pny++E+++w ++++v k      F+lf++l+ltv++a+++ w++kk++kY ++R++liP++f
  CCD22802.1 262 PNYTFEVWSWFWFTVVLK------FNLFAMLFLTVSTAQMYLWAQKKNRKYKTKRAFLIPYIF 318
                 ******************......**************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2321.00
//
Query:       CCD22803.1  [L=320]
Description: hypothetical protein NDAI_0A06490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.4e-108  358.9   0.0   8.9e-108  358.6   0.0    1.0  1  Fibrillarin      Fibrillarin
    7.1e-06   25.9   0.0    1.2e-05   25.2   0.0    1.3  1  GCD14            tRNA methyltransferase complex GCD14 subunit
     0.0057   16.8   0.0     0.0076   16.4   0.0    1.2  1  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.067   12.8   0.0       0.15   11.7   0.0    1.5  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
      0.092   12.5   0.0       0.15   11.8   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl


Domain annotation for each model (and alignments):
>> Fibrillarin  Fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.6   0.0  2.5e-111  8.9e-108       1     225 [.      81     314 ..      81     315 .. 0.99

  Alignments for each domain:
  == domain 1  score: 358.6 bits;  conditional E-value: 2.5e-111
                  EEEECSSTTEEEEETTSSEEEEEE-SSTT--SSSSEEEEETTE...........EEEEE-TTTSHHHHHHHTT-S--S--TTSEEEEESTTTSHHHHH CS
  Fibrillarin   1 veeheklegvyivkekgdarlatknlvpgekvYgEklikveee...........EyRvWnpfrsKlaaailkglkelpikkgskvLYlGaasGttvsH 87 
                  +e+h k++gvyi+++k+d  l+tkn++pge+vYgEk+i+vee            EyRvWnpfrsKlaa+i+ gl+el i +g+kvLYlGaasGt+vsH
   CCD22803.1  81 IEPH-KHAGVYIARGKEDL-LVTKNMAPGESVYGEKRISVEEPskedgvpptktEYRVWNPFRSKLAAGIMGGLDELFIAPGKKVLYLGAASGTSVSH 176
                  5788.9***********99.*********************9999***************************************************** PP

                  HHHHHTTTSEEEEEESSHHHHHHHHHHHTTSTTEEEEES-TTSGGGGTTTS--EEEEEEESSSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHHSSSS CS
  Fibrillarin  88 vsDivgeegvvyavefsprvlrelievakkRknivPileDArkPekYralvekvDvifaDvaqpdqarilaknaklflkeggyllisikarsidvtke 185
                  vsD+vg+egvvyavefs+r +reli++akkR+n++Pi+eDAr+P+kYr+lv +vD++faDvaqpdqari+a+n+++flk++g ++isika++id+t++
   CCD22803.1 177 VSDVVGPEGVVYAVEFSHRPGRELISMAKKRPNVIPIIEDARHPQKYRMLVGMVDCVFADVAQPDQARIIALNSHMFLKDQGGVVISIKANCIDSTVD 274
                  ************************************************************************************************** PP

                  HHHHHHHHHHHHHHTTEEEEEEEE-TTTSTTEEEEEEEEE CS
  Fibrillarin 186 peevfkeeveklkeeglkvleqvklepyekdhalvvgkyk 225
                  +e+vf++ev+kl+ee++k+leq++lepye+dh++vvg+y 
   CCD22803.1 275 AETVFAREVQKLREERIKPLEQLTLEPYERDHCIVVGRYM 314
                  *************************************996 PP

>> GCD14  tRNA methyltransferase complex GCD14 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.3e-09   1.2e-05      35     152 ..     154     272 ..     147     303 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 3.3e-09
       GCD14  35 kLelkpGsvvvesGtGsgslshaiartvaPtGhlftfefheqraekareefrehelsqlvtvthrDvc.keGfdeevsgkvDavfLDlPaPwea.ipha 131
                 +L + pG +v+  G+ sg+  + ++  v+P G ++++ef ++  ++ +   +++    +v     D+   + + + + g vD+vf D+ +P++a i  +
  CCD22803.1 154 ELFIAPGKKVLYLGAASGTSVSHVSDVVGPEGVVYAVEFSHRPGRELISMAKKRP---NVIPIIEDARhPQKY-RMLVGMVDCVFADVAQPDQArIIAL 248
                 57799************9887889***************8765555554444433...333334455413444.5577***************965555 PP

       GCD14 132 akal..kkeggrlCsf.sPCieqv 152
                  +++  k++gg++ s  + Ci+  
  CCD22803.1 249 NSHMflKDQGGVVISIkANCIDST 272
                 566667999999998735799764 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.1e-06    0.0076      16      97 ..     155     239 ..     140     279 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.1e-06
                 HT-S-TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS.........HHHTTEEEECS-CCCSSHHHHHCHCHHHSSEEEEEE--S- CS
        FtsJ  16 fklfkpgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm.........aplpgvttiqgditdpetiekikealserkvdlvvsDgap 97 
                    + pgk+v+ lgaa G     ++  +g++g+v+av   +          +++p+v  i  d ++p++ +++        vd+v +D+a 
  CCD22803.1 155 LF-IAPGKKVLYLGAASGTSVSHVSDVVGPEGVVYAVEFSHRpgrelismaKKRPNVIPIIEDARHPQKYRMLVG-----MVDCVFADVAQ 239
                 33.579*********************************888889999887777*****************9886.....59******993 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.1e-05      0.15       9      85 ..     160     235 ..     154     247 .. 0.77
   2 ?   -3.3   0.0       1.6   5.8e+03      33      50 ..     275     292 ..     271     299 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.1e-05
                      T-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC...EEEEEE CS
  Methyltr_RsmB-F   9 eetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.elfDriLl 85 
                      ++++l l aa G   +h+++++ ++g+v+Av+ +++  +++++  k+ +   +i +  Dar+++k+     ++D +  
       CCD22803.1 160 GKKVLYLGAASGTSVSHVSDVVGPEGVVYAVEFSHRPGRELISMAKKRPN--VIPIIEDARHPQKYRMLvGMVDCVFA 235
                      6789999**************************99888887777666543..35566788888776433245666655 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
                      TSEEEEEESSCCCHHHHH CS
  Methyltr_RsmB-F  33 kgtvvAvdankeRlkrva 50 
                      + tv+A +++k R +r++
       CCD22803.1 275 AETVFAREVQKLREERIK 292
                      678999999999988876 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     4e-05      0.15      67     108 ..     153     194 ..     142     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4e-05
                 HHTT--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBH CS
        PCMT  67 ellelkkgarvLevGsGsGyltavlarlvgekgrvvsierik 108
                 + l + +g++vL +G+ sG     ++ +vg++g v ++e ++
  CCD22803.1 153 DELFIAPGKKVLYLGAASGTSVSHVSDVVGPEGVVYAVEFSH 194
                 446699***************************999999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2361.18
//
Query:       CCD22804.1  [L=637]
Description: hypothetical protein NDAI_0A06500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-81  273.5   0.1    3.7e-81  272.5   0.1    1.5  1  Mannosyl_trans3  Mannosyltransferase putative


Domain annotation for each model (and alignments):
>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.5   0.1   2.1e-85   3.7e-81       2     275 .]     216     487 ..     215     487 .. 0.96

  Alignments for each domain:
  == domain 1  score: 272.5 bits;  conditional E-value: 2.1e-85
  Mannosyl_trans3   2 kGIVisgggkesllalrlIkvLralgnkLPIeivikk.eelekefcekilpaaeepkqevwfvnakcvlnedylgkefk......gfqnKalAl 88 
                      +GIVi+gggk+sll+l++Ik+Lr+ +++LP+e+ i + ee + efc++ilp          ++nakc+  +++l++++       g+q+K+lA+
       CCD22804.1 216 DGIVIVGGGKYSLLSLLAIKTLRKFNTTLPVEVYISQdEEGDLEFCDEILP----------QYNAKCISIKNILSNDLIntfkfaGYQYKSLAV 299
                      7************************************9999**********..........9999999999999998888999999******** PP

  Mannosyl_trans3  89 lfssFeevllLDaDnvplknpdklFeseeYkktglllwkdrdlwkrstspkfyeiae..........nklepskeeskyfgkkerekeseevpl 172
                      l ssFe+ llLDaDn+p+k++d++F++e+Y ++ +++w  +d+w+r+t+p++y+ia+          n++++ ++++ y++ ++   + +e+p+
       CCD22804.1 300 LSSSFENLLLLDADNFPIKPLDDIFKQEPYLSKRMVMW--PDFWRRTTHPSYYDIAHifvnkssrirNSYDDVTPSNVYTDYSK---SLDEIPF 388
                      **************************************..*****************999999999999999999999999877...468**** PP

  Mannosyl_trans3 173 hdlfgtipdhssesGlvvinKkkhlktLllalylnlygpk..ykllsqgaagegdKEtfwlaahvlgekYyfvkekaaaiGeltkkekkksesk 264
                      hd++gt pd s+esG++++nKk+hlk++llaly+n++gp+  y+ +sqg agegdKEtf+++a +++++Yy+vk++ ++ G+++k+      + 
       CCD22804.1 389 HDFEGTLPDLSTESGQLLLNKKEHLKAILLALYYNVNGPNwyYPIFSQGVAGEGDKETFLAGANFYNLTYYQVKTYPRVSGHFNKE------DG 476
                      *************************************************************************************6......66 PP

  Mannosyl_trans3 265 eicsaqlghld 275
                      +++++++++ d
       CCD22804.1 477 SYRGVAILQSD 487
                      78888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4676.95
//
Query:       CCD22805.1  [L=712]
Description: hypothetical protein NDAI_0A06510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0013   18.6   0.2     0.0028   17.6   0.2    1.5  1  zf-RING_5     zinc-RING finger domain
     0.0019   18.0   0.1     0.0044   16.8   0.1    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0037   17.3   0.6     0.0082   16.2   0.6    1.6  1  zf-RING_UBOX  RING-type zinc-finger
      0.005   16.7   0.1      0.013   15.3   0.1    1.7  1  Prok-RING_4   Prokaryotic RING finger family 4
     0.0061   16.8   1.1       0.42   10.9   0.2    2.4  2  IBR           IBR domain, a half RING-finger domain
     0.0061   16.4   0.1      0.015   15.1   0.1    1.6  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.073   13.2   0.1        0.2   11.9   0.1    1.7  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
       0.16   12.3   0.1       0.41   11.0   0.1    1.6  1  zf-RING_2     Ring finger domain
       0.21   11.4   0.3       0.51   10.1   0.3    1.6  1  zf-RING_11    RING-like zinc finger


Domain annotation for each model (and alignments):
>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   1.4e-06    0.0028      12      29 ..     641     658 ..     624     672 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.4e-06
   zf-RING_5  12 eekfyltsCgHifCekCl 29 
                 ++k+y+ sCgH+fC +C 
  CCD22805.1 641 SQKVYVASCGHTFCGRCY 658
                 678**************7 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.2e-06    0.0044       9      30 ..     640     661 ..     638     668 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.2e-06
  zf-C3HC4_2   9 lkdpsvvtpCgHvfCqkCilrs 30 
                 l++ ++v+ CgH+fC  C  r 
  CCD22805.1 640 LSQKVYVASCGHTFCGRCYVRI 661
                 556689************9884 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.6   4.1e-06    0.0082      14      26 ..     646     665 ..     623     693 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.1e-06
  zf-RING_UBOX  14 l.pCGHtFCreCl......w 26 
                   + +CGHtFC +C       +
    CCD22805.1 646 VaSCGHTFCGRCYvridnaK 665
                   447*********96543320 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   6.7e-06     0.013       9      30 ..     642     663 ..     634     667 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.7e-06
  Prok-RING_4   9 kkailepCgHlvCkeCfdskdl 30 
                  +k+ +++CgH +C +C+   d+
   CCD22805.1 642 QKVYVASCGHTFCGRCYVRIDN 663
                  68899************98765 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2   0.00021      0.42      20      55 ..     624     660 ..     616     666 .. 0.85
   2 ?    4.0   0.0     0.031        61      18      32 ..     689     703 ..     670     709 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
         IBR  20 wCprpdCeaiiekseg.cksvtCskCgfefCfnCkke 55 
                 +Cp++  +++ + + + +++v  ++Cg+ fC +C + 
  CCD22805.1 624 HCPYQSLSKPSQLDRDlSQKVYVASCGHTFCGRCYVR 660
                 69988888888888887777999***********875 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.031
         IBR  18 lkwCprpdCeaiiek 32 
                  k Cp p C++++++
  CCD22805.1 689 PKTCPGPSCKTLLRS 703
                 589*******99876 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   7.6e-06     0.015      10      32 ..     642     664 ..     637     671 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.6e-06
                 S-E.E-TTS--B-CHHHHHHHHC CS
    zf-C3HC4  10 epnelleCkHsfCskCirkilks 32 
                 +++ +  C+H+fC  C+++i + 
  CCD22805.1 642 QKVYVASCGHTFCGRCYVRIDNA 664
                 5556789**********999774 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   9.8e-05       0.2      15      32 ..     648     665 ..     640     671 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.8e-05
  zf-C3HC4_4  15 eCGhsfClsCisslqkep 32 
                 +CGh+fC +C  ++ + +
  CCD22805.1 648 SCGHTFCGRCYVRIDNAK 665
                 6*********88776555 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1    0.0002      0.41      14      33 ..     642     661 ..     633     668 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
   zf-RING_2  14 dsvlllpCgHvfhreClerw 33 
                 ++v +  CgH+f+  C  r+
  CCD22805.1 642 QKVYVASCGHTFCGRCYVRI 661
                 5566667*********8764 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.3   0.00026      0.51      12      24 ..     641     653 ..     638     657 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
  zf-RING_11  12 gqalfilpCsHtF 24 
                 +q++++++C+HtF
  CCD22805.1 641 SQKVYVASCGHTF 653
                 799********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       903  (0.0503653); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 5279.02
//
Query:       CCD22806.1  [L=206]
Description: hypothetical protein NDAI_0A06520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-41  140.2   2.7    2.5e-41  139.6   2.7    1.3  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
    3.4e-22   78.5  10.2    5.1e-22   77.9  10.2    1.3  1  zf-rbx1       RING-H2 zinc finger domain
    1.1e-06   28.8  16.9    1.4e-05   25.3  16.9    2.4  1  zf-RING_2     Ring finger domain
    0.00024   20.9   5.5    0.00024   20.9   5.5    2.4  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0075   16.3  10.9      0.039   14.0   7.4    2.4  2  zf-RING_UBOX  RING-type zinc-finger
  ------ inclusion threshold ------
      0.016   15.0  15.2      0.091   12.7  15.2    2.1  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
      0.019   15.1  17.1       0.36   11.0  17.1    3.0  1  FANCL_C       FANCL C-terminal domain
       0.02   15.0   3.0       0.02   15.0   3.0    2.1  2  zf-C3HC4_4    zinc finger of C3HC4-type, RING
      0.026   14.3   2.1      0.026   14.3   2.1    2.9  2  zf-RING_4     RING/Ubox like zinc-binding domain
      0.038   13.8  12.8        1.9    8.4  12.9    2.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
       0.22   11.5  13.7       0.79    9.7  13.9    1.9  2  zf-RING_5     zinc-RING finger domain
        0.3   10.9  10.3        1.4    8.7  10.3    2.1  1  zf-RING_11    RING-like zinc finger
       0.38   10.4   7.9       0.89    9.2   7.9    1.6  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
       0.59   10.3   6.4       0.61   10.3   5.1    1.6  1  zf-HC5HC2H_2  PHD-zinc-finger like domain
        1.8    8.5   8.8       0.56   10.1   4.2    2.1  2  zf-HIT        HIT zinc finger
          3    8.1   7.8        8.3    6.6   7.8    1.8  1  RINGv         RING-variant domain


Domain annotation for each model (and alignments):
>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6   2.7   2.3e-44   2.5e-41       1      84 [.       1     113 [.       1     114 [. 0.99

  Alignments for each domain:
  == domain 1  score: 139.6 bits;  conditional E-value: 2.3e-44
                 --EEEEEEEE--B--B.-SS.............................SSB-TTT-SBTTS--TTCSTTTTTS-EEEBTTS-EEEHHHHHHHHHHHST CS
  zf-ANAPC11   1 mkvkikevksvatwswdvas.............................ddvcGicrvsfdGtcpsckfpGddcplvlGkckhnfhlhcilkwletets 70 
                 mk++++++  +++wswd+++                             ddvcGicr+s++Gtcp+ckfpG dcplvlG+c+hnfh hci++wl+t ts
  CCD22806.1   1 MKIEVQNIYPLVAWSWDMPKnlddpdsdepdnandsygirrrapnknavDDVCGICRASYNGTCPNCKFPGTDCPLVLGRCNHNFHFHCIYQWLKTLTS 99 
                 9************************************************************************************************** PP

                 SSB-TTTSSB--BE CS
  zf-ANAPC11  71 kglcpmcrqtfklk 84 
                 kglcpmcrq+f+lk
  CCD22806.1 100 KGLCPMCRQKFRLK 113
                 ***********986 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9  10.2   4.5e-25   5.1e-22       1      55 []      51     107 ..      51     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 4.5e-25
     zf-rbx1   1 dtCaiCrneleeacieckapgdeecpvvlGeCgHaFHlhCiskWlkt...rkvCPlcr 55 
                 d C+iCr +++++c++ck+pg++ cp+vlG+C+H+FH+hCi +Wlkt   +  CP+cr
  CCD22806.1  51 DVCGICRASYNGTCPNCKFPGTD-CPLVLGRCNHNFHFHCIYQWLKTltsKGLCPMCR 107
                 68*********************.************************9999*****8 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3  16.9   1.3e-08   1.4e-05       2      44 .]      63     107 ..      51     107 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.3e-08
   zf-RING_2   2 eCpICleelssadsvlll.pCgHvfhreClerwlrssst...CPlCr 44 
                 +Cp C  ++  +d++l+l  C+H fh++C+ +wl++  +   CP+Cr
  CCD22806.1  63 TCPNC--KFPGTDCPLVLgRCNHNFHFHCIYQWLKTLTSkglCPMCR 107
                 34444..3444444556657*************988888889****9 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   2.0      0.44   4.9e+02      23      40 .]      53      67 ..      51      68 .. 0.65
   2 !   20.9   5.5   2.2e-07   0.00024      12      40 .]      75     106 ..      72     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.44
  zf-C3HC4_2 23 CqkCilrsLeekneCPlC 40
                C  C + +   +  CP C
  CCD22806.1 53 CGICRASY---NGTCPNC 67
                55555554...5688888 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 2.2e-07
  zf-C3HC4_2  12 psvvtpCgHvfCqkCilrsLe...ekneCPlC 40 
                 p+v+  C+H f+  Ci ++L+   +k  CP+C
  CCD22806.1  75 PLVLGRCNHNFHFHCIYQWLKtltSKGLCPMC 106
                 677889*********988764221677***** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   7.4   3.5e-05     0.039       1      27 [.      53      95 ..      53     102 .. 0.78
   2 ?    3.4   0.1     0.072        80       1      11 [.     103     114 ..     103     122 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.5e-05
  zf-RING_UBOX  1 CpIClelft............dPlvl.pCGHtFCreCl..w.e 27
                  C IC+ +++             Plvl  C H+F+ +C+  w +
    CCD22806.1 53 CGICRASYNgtcpnckfpgtdCPLVLgRCNHNFHFHCIyqWlK 95
                  8899999999988888888888877878**********76542 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.072
  zf-RING_UBOX   1 CpIClelft.dP 11 
                   Cp C++ f  +P
    CCD22806.1 103 CPMCRQKFRlKP 114
                   ********8755 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7  15.2   8.1e-05     0.091       1      41 []      53     106 ..      53     106 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.1e-05
                 -TTT-S--SS-E.............E-TTS--B-CHHHHHHHHC.TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn............elleCkHsfCskCirkilks.rkkvkCPlC 41 
                 C iC   +  ++             l  C+H+f+++Ci ++lk+  +k  CP+C
  CCD22806.1  53 CGICRASYNGTCpnckfpgtdcplVLGRCNHNFHFHCIYQWLKTlTSKGLCPMC 106
                 7777777777777777777777778999***************9766666**** PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  17.1   0.00032      0.36       4      67 ..      52     112 ..      50     115 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00032
                 S-SSS--SS-...TT-----B--S-T..T----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG CS
     FANCL_C   4 eCgiCyayrl...dsgevpdisCdne..kCnkkfHsaCLkeWlrslkesrqsfdvlfGeCPyCkkkisv 67 
                  CgiC a       + + p + C     +Cn++fH +C+++Wl++l++         G CP C++k  +
  CCD22806.1  52 VCGICRASYNgtcPNCKFPGTDCPLVlgRCNHNFHFHCIYQWLKTLTSK--------GLCPMCRQKFRL 112
                 59999777664446778888889754449****************9864........999999999766 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.6       6.7   7.6e+03      38      42 .]      63      67 ..      53      67 .. 0.59
   2 ?   15.0   3.0   1.8e-05      0.02      15      42 .]      80     106 ..      73     106 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.7
  zf-C3HC4_4 38 lCplC 42
                +Cp C
  CCD22806.1 63 TCPNC 67
                56666 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.8e-05
  zf-C3HC4_4  15 eCGhsfClsCisslqkepdgeqllCplC 42 
                  C h+f ++Ci+++ k   ++  lCp+C
  CCD22806.1  80 RCNHNFHFHCIYQWLKTLTSK-GLCPMC 106
                 5*****************997.89**** PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   4.3     0.063        71      27      44 ..      55      68 ..      45      70 .. 0.74
   2 ?   14.3   2.1   2.3e-05     0.026      19      47 ..      80     110 ..      71     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.063
   zf-RING_4 27 fCyhrileeeegrCPaCr 44
                 C    +++ +g CP+C+
  CCD22806.1 55 IC----RASYNGTCPNCK 68
                44....334689*****9 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.3e-05
   zf-RING_4  19 eCgyqiClfCyhrile..eeegrCPaCreeY 47 
                  C++++   C  + l+  +++g CP Cr+++
  CCD22806.1  80 RCNHNFHFHCIYQWLKtlTSKGLCPMCRQKF 110
                 79999999998888775568*********98 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  12.9    0.0017       1.9       3      47 ..      62     110 ..      50     112 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0017
                 SB-TTTSSS..BS-EEETTEEEEEE-HHHHHHHHH...TT-B-TTT--B- CS
  zf-C3HC4_3   3 eeCviCler..prnvvllpCgHlvlCeeCaekllk...rkkkCpiCrrpi 47 
                  +C+ C+    +   vl +C+H  +  +C  ++lk   +k  Cp+Cr++ 
  CCD22806.1  62 GTCPNCKFPgtDCPLVLGRCNHN-FHFHCIYQWLKtltSKGLCPMCRQKF 110
                 579999986215557888*****.**********99***********986 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.38   4.3e+02      36      43 ..      50      57 ..      45      58 .. 0.77
   2 ?    9.7  13.9    0.0007      0.79       2      44 .]      53     108 ..      52     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.38
   zf-RING_5 36 eavCpiCr 43
                ++vC iCr
  CCD22806.1 50 DDVCGICR 57
                67999998 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0007
   zf-RING_5   2 CnkCfekl.........skeek....fyltsCgHifCekClkkll...ekeavCpiCrk 44 
                 C +C+ ++             +     +l +C H f+ +C+ + l   +++  Cp+Cr+
  CCD22806.1  53 CGICRASYngtcpnckfP---GtdcpLVLGRCNHNFHFHCIYQWLktlTSKGLCPMCRQ 108
                 999999998886665553...044469****************9999**********97 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  10.3    0.0013       1.4      16      29 .]      76      90 ..      53      90 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0013
  zf-RING_11 16 fil.pCsHtFHfkCI 29
                 +l  C+H FHf+CI
  CCD22806.1 76 LVLgRCNHNFHFHCI 90
                44425*********9 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   7.9   0.00079      0.89       6      46 ..      63     104 ..      50     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00079
  Zn_ribbon_17   6 sCayCelavkgrvvlcgvCeHvlHasCarewfendd.laeCp 46 
                   +C  C+ + +   ++ g+C+H  H+ C+ +w+++   ++ Cp
    CCD22806.1  63 TCPNCKFPGTDCPLVLGRCNHNFHFHCIYQWLKTLTsKGLCP 104
                   7999999999999999***************98866467777 PP

>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   5.1   0.00055      0.61      43      87 ..      48      92 ..      33     103 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00055
  zf-HC5HC2H_2 43 pvd.vekikkerlkekCllCkkrkGaciqCskkeCktafHvtCala 87
                   vd v  i+++ ++ +C +Ck   G+      ++C++ fH +C+++
    CCD22806.1 48 AVDdVCGICRASYNGTCPNCKFP-GTDCPLVLGRCNHNFHFHCIYQ 92
                  23334445555555555555543.5544445566*********987 PP

>> zf-HIT  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.2    0.0005      0.56       4      21 ..      52      69 ..      50      76 .. 0.91
   2 ?    0.1   0.1      0.67   7.5e+02       4      10 ..     102     108 ..      99     112 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0005
                B-TTT-SB-SEE-TTT-- CS
      zf-HIT  4 lCgvCgfpakYkCpkCnt 21
                +Cg+C + ++ +Cp+C+ 
  CCD22806.1 52 VCGICRASYNGTCPNCKF 69
                7***************85 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.67
                 B-TTT-S CS
      zf-HIT   4 lCgvCgf 10 
                 lC +C +
  CCD22806.1 102 LCPMCRQ 108
                 6777765 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.8    0.0074       8.3      24      48 .]      82     106 ..      53     106 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0074
                 CCSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv  24 lklvHesClekWldekeantqCeiC 48 
                 ++ +H +C+ +Wl++ +++  C +C
  CCD22806.1  82 NHNFHFHCIYQWLKTLTSKGLCPMC 106
                 6789***********999999***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1448.63
//
Query:       CCD22807.1  [L=1014]
Description: hypothetical protein NDAI_0A06530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.7e-135  451.1   1.9   4.7e-135  451.1   1.9    1.8  2  Tcp11     T-complex protein 11


Domain annotation for each model (and alignments):
>> Tcp11  T-complex protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.0      0.16   2.9e+03     296     329 ..      38      76 ..       9     191 .. 0.58
   2 !  451.1   1.9  2.6e-139  4.7e-135       1     441 [.     466     989 ..     466     990 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.16
       Tcp11 296 sslkklkeeilalledees.......esgerwtesi..aleia 329
                  + +   + i++ l++ ++       +++    ++i  +    
  CCD22807.1  38 GNNSPSNNDISSTLDNTNKtpdilitAHM----KNIsrSNSTS 76 
                 33333344444444444333322222222....2222111111 PP

  == domain 2  score: 451.1 bits;  conditional E-value: 2.6e-139
       Tcp11   1 LrheilfDpelqfrpnldgeegrvketmakayWdaleeele........kdppdysrllallkelrdiLlslvpnslrqeieevLDldlleqqlekgvl 91 
                 Lrh+i+fDp lqfrpnldg++g +k+ + ++yW+++ +el         +  p+ s l++l+++lrd+Ll++vp+++ + i+++LD++l+ q+l kg+l
  CCD22807.1 466 LRHDIIFDPLLQFRPNLDGDRGIKKRNISDKYWNDVHNELIvyserpdvF-NPKLSKLPPLFNTLRDVLLTIVPTKESNLITDALDTELIIQELLKGSL 563
                 8****************************************999888754.5899******************************************** PP

       Tcp11  92 dleklaewlanllkklCAPmRDeevdkmvekiseaseessvdklVegLrelfeiLelMklDvaNhqirllrplLietaveyErkkFqerlesgkisles 190
                  +++la+wla+l+k++CAPmRD++vdkm+ k+ ea+ e+s+ kl+++++ +f+iLe+MklD+aNhqirllrp+L+++ave+E+++F+++++s+ki+l+ 
  CCD22807.1 564 IMSNLADWLAKLFKHHCAPMRDSWVDKMSLKFIEAQSENSILKLIDAFKIVFQILEAMKLDIANHQIRLLRPALLSNAVEFEKQYFNSLMNSKKINLKP 662
                 *************************************************************************************************** PP

       Tcp11 191 trkWlrkarekleaesserdpesss.ssssassspspskvliqglldllsssadpsseeefPetLalDhaRLrelradlrqlvvlasclllfkqlvkrd 288
                 +++W+ +++++++ +++ + ++s++ ++++  + p++++++ ++ ++lls+++     +++P++L++Dh+RL++lrad+rqlv+l +c llf+ql+++d
  CCD22807.1 663 SLNWFVSKYNEYNITTNVNASTSTRtRNNNDVNIPHVYRLCLRSTISLLSCRK---MVRDYPTSLSFDHTRLILLRADIRQLVCLLVCQLLFQQLISND 758
                 ********9999999998888888877777778899***************84...3447*************************************** PP

       Tcp11 289 vsss.......vsrsslkklkeeilalledeesesg.erwt...esialeiare......................vsksl.kessalpdempeaakaw 353
                 ++++       +s++s +klk+ i+++++d+   +g +rwt    +i++++++                       +  s    +++++++++++ak+w
  CCD22807.1 759 TTMDkptkdfiSSSYSKQKLKSDITSIITDD---HGnCRWTkntLAISIHLCKIindlkfakennvdlsvigssstI--STsRFPTEIDQTKIAFAKSW 852
                 *999*******999****************9...899****9888889999999****************8765422..22234555666********* PP

       Tcp11 354 Lskqlqkvlsksdpvfkllesrvrkalearlla...................................................ssasekvretstase 401
                 Lskq+q++   sd v+++le+rv k+le++++                                                    +s+ +++++ +  s+
  CCD22807.1 853 LSKQTQPL---SD-VYGVLENRVLKSLEDSVFTnssctidgrvkqdfvylyntstmstsdtiahpaktekgilslgkstaiggaNSNATNKNTVTPSSS 947
                 ********...99.**************************************************************99999986444466677778888 PP

       Tcp11 402 kllpaGlsefve..eveelaerlaklvsvhwrvfgplYeeil 441
                 +++ +Gl  f+e  e e+++++l+++ ++hw+vfg++Y + l
  CCD22807.1 948 NTTTGGLFSFQEmeEYENIYRHLYTVLNLHWSVFGNHYIDAL 989
                 88899999999899************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1710  (0.0953762); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 6445.17
//
Query:       CCD22808.1  [L=414]
Description: hypothetical protein NDAI_0A06540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-45  155.9  11.4    2.8e-40  138.3   1.1    2.5  2  Maf1      Maf1 regulator
  ------ inclusion threshold ------
        1.7    7.1  17.1          2    6.8  17.1    1.1  1  Macoilin  Macoilin family


Domain annotation for each model (and alignments):
>> Maf1  Maf1 regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   2.5   9.8e-09   8.8e-05       1      62 [.      25      90 ..      25     136 .. 0.81
   2 !  138.3   1.1   3.1e-44   2.8e-40       6     174 .]     182     351 ..     177     351 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 9.8e-09
        Maf1  1 iegrlelYsckaagsdkklykkiekeleselessskeslsls....aaseslssssPfgplsdkss 62
                i+g+++++++k + sdkklyk+i+++le+ l+++++ ++ ++     +++++ s sPf++ s+ +s
  CCD22808.1 25 ITGGCDIFTTKPVASDKKLYKTIDHHLETILQENESYKAAIQqqilMEANKSISPSPFNQTSNDAS 90
                689*************************98887776666665777777778888888887765544 PP

  == domain 2  score: 138.3 bits;  conditional E-value: 3.1e-44
        Maf1   6 elYsckaagsdkklykkiekeleselessskeslsls.......aaseslssssPfgplsdkssrktlayLiatLnasfpdYDFsslrsseFkkekslk 97 
                  lY+  + ++d +  +++++ ++++ +s+++ +++ +       ++++s+ +  Pfgp+++ +sr+t+ayLia+Lnas+pd+DFs+l++++F++  slk
  CCD22808.1 182 SLYNSMNKRNDSNRDESTTNGINNDNNSTEDGEKKKKirrrsslNDTSSNITIGPFGPIKEPASRRTFAYLIAILNASYPDHDFSTLEPTDFTRS-SLK 279
                 579999999999999999999999888887777766689999989999999999****************************************7.*** PP

        Maf1  98 svinnidstLsslveekyeelreklWklideeidlkdCdiYsYkpdedsdpf..keegalwsfnYFffnkklKrvlfls 174
                 s+i++++s+L+s      ++ +e++W++i+ +++l+dC +Y Y+p ++   f  +e g+lws++ F+fnkk+Krv+fl+
  CCD22808.1 280 SFISKFESSLYS----LGKQSEEWIWDIINPHMTLADCVVYLYSPAKS---FleDEPGYLWSLMGFLFNKKRKRVAFLY 351
                 ************....577789************************85...656666********************96 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  17.1   0.00023         2     228     384 ..      76     230 ..      37     297 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00023
    Macoilin 228 evdpvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlskses.sgsesellveesvkskssssss 325
                 +++p+  ++ +++ ++  ++++   +  + +++    ++++s+++ ++n++ + + +  ++ e+++ + ++ +s++ ++++ + lv es++   ss+s 
  CCD22808.1  76 SISPSPFNQTSNDASSFWEQKRRMSVGDSFHNNHYYTNSNNSTNNPNNNSTNNVNNNTVSFWEENVATPPIIRSSKlNDQNLKELVMESNSGYGSSTSI 174
                 345666666666666664455555555555555555555666666666777777888888888887777766554403444444455555555555555 PP

    Macoilin 326 ssnknskkasagsagssnssskkhsessksvtsssssknskkqklpaGkssaalkdaae 384
                 +s+k+s ++  +s++  n s ++ s++++  ++ +s+++ +k+k    + +++l+d+  
  CCD22808.1 175 TSSKSS-SSLYNSMNKRNDSNRDESTTNGINNDNNSTEDGEKKKKI--RRRSSLNDTSS 230
                 444444.455558899999999999999999988888877777664..33445555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1626  (0.0906911); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 2726.64
//
Query:       CCD22809.1  [L=485]
Description: hypothetical protein NDAI_0A06550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-48  163.5   0.2    4.7e-43  147.3   0.1    2.3  2  Rad51     Rad51
    1.2e-07   31.6   0.0    2.1e-07   30.7   0.0    1.4  1  AAA_25    AAA domain
    2.3e-05   24.0   0.6    5.7e-05   22.7   0.6    1.6  1  RecA      recA bacterial DNA recombination protein
    0.00044   19.7   5.5      0.013   14.9   5.5    2.6  1  ATPase    KaiC
     0.0095   15.7   0.0      0.019   14.7   0.0    1.5  1  AAA_24    AAA domain


Domain annotation for each model (and alignments):
>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3   0.1   1.3e-46   4.7e-43      17     197 ..     102     289 ..      49     344 .. 0.84
   2 !   14.3   0.0   5.2e-06     0.019     199     254 ..     404     482 ..     354     483 .. 0.88

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 1.3e-46
                 -EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHH.HHTT--HHHHGGGEEEEE--ST CS
       Rad51  17 lqlttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveia.erykldkeevlenvayaRayti 114
                 ++ ttG++++De LgGGi  g+iteifGe+ +Gk+ql ++lc+ vqlp+++gG e+k+vyi teg + ++rl  i   r +l+k+ v +++      + 
  CCD22809.1 102 VCFTTGDVTIDESLGGGIFLGNITEIFGESSTGKSQLLMQLCLSVQLPKSMGGLESKCVYITTEGDLPTTRLEGILdARPELKKHGVSQHNIFTVSCND 200
                 569***********************************************************************9845669999999887766666554 PP

                 .THHHHHHH.HTHHHH..HHS-EEEEEEETTTGGGCH-------THHHHHH..HHHHHHHHHHHHHHH--EEEEEEE-------.---- CS
       Rad51 115 .ehqeellq.qaaall..aedkfallivDsvtalyRtdfsgrgelakRqqk..lgkllrtLrkladefevavvitnqvvaqvdgqaalf 197
                    qe++l+ q++ ll  +e+k++l+i+Ds+  + R++ +     a+R+++  + +++++L ++ad++++a+v++nqv++++ ++ ++ 
  CCD22809.1 201 lITQEHILNvQLPVLLeqNESKIKLIIIDSISHHMRVELQTNSIKASRNNRyyVEQMAERLLHIADKHSLAIVVANQVSDKPMAEKQTR 289
                 478999999899988744689********************999999*9974479*************************976655443 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 5.2e-06
                 -------HHHHHHHH-SEEEEEEE-ST.......................TEEEEEEES-SSS-S-EEEEEEETTEEE- CS
       Rad51 199 adpkkPigGlvlahasttRlalrkgkg.......................eeRivkvvdsPnlpeleavfaigeeGied 254
                  d++ P +Gl +a+ ++tR+ lrk                           +R +kvv s  +   e+ f i+++Gie+
  CCD22809.1 404 IDTRVPNLGLSWANHVSTRILLRKTYMaspmikrgdlkyydgtdtskfwqARRTLKVVFSSFCKPGEVAFIISKKGIES 482
                 3999********************98778889999*************99999*****99999999***********87 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     6e-11   2.1e-07      30     190 ..     119     279 ..     111     283 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 6e-11
      AAA_25  30 lpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal.......rddarllvldlagveslpLfakdr 121
                 + +g ++ ++G + tGK+ l+++l+l+v + k+  g       k++y+ +E++      Rl+ ++ a+         + + + +      +++L   ++
  CCD22809.1 119 IFLGNITEIFGESSTGKSQLLMQLCLSVQLPKSMGG----LESKCVYITTEGDL--PTTRLEGILDARpelkkhgVSQHNIFTV-----SCNDL---IT 203
                 457889999********************9998866....578**********9..7899999999984433332222222222.....34555...55 PP

      AAA_25 122 ggtlltadvdaleaaieevegvrlvviDplsralgg..densnsd.......vgalvealeriarrtgaavllvhHvg 190
                 ++++l+ ++  l ++ e+  +++l++iD++s+ ++   + ns ++       v+++ e+l +ia+++  a+++  +v+
  CCD22809.1 204 QEHILNVQLPVLLEQNES--KIKLIIIDSISHHMRVelQTNSIKAsrnnryyVEQMAERLLHIADKHSLAIVVANQVS 279
                 777788777777777666..4*************9977666655577888879***************9999987765 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.6   1.6e-08   5.7e-05      33     142 ..     103     233 ..      89     283 .. 0.58

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.6e-08
                 EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH...HTT-...-EEEEESS---.........-HH.HHHHTT--GGG-E.EE--S CS
        RecA  33 tissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaq...kkgg...vaafidaehal.........dpk.yakklGvdidell.vsqpd 114
                 ++++G +++d +lG GG+  G i+ei+G  s+Gk+ l +++  ++q     gg    +++i +e  l         d++   kk Gv  ++++ vs  d
  CCD22809.1 103 CFTTGDVTIDESLG-GGIFLGNITEIFGESSTGKSQLLMQLCLSVQlpkSMGGlesKCVYITTEGDLpttrlegilDARpELKKHGVSQHNIFtVSCND 200
                 689***********.**********************99999888843223442225788877765411111111133212456677766654356555 PP

                 ..SHHHHHHHH.HHHH..TTT--SEEEEE-TTT CS
        RecA 115 ..tGeqaleia.dalv..rsgaidlivvdsvaa 142
                   t e+ l++   +l+  + + i li++ds++ 
  CCD22809.1 201 liTQEHILNVQlPVLLeqNESKIKLIIIDSISH 233
                 334555666541333321334577777777654 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   5.5   3.6e-06     0.013       6     131 ..     109     234 ..     104     320 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.6e-06
      ATPase   6 eglDeilkgGipegrvvlitGepGtGKtifalqFli.....kgaekygepgvfvtveepa.edlrenakslGwdlekleeegklaiidasesaeesaee 98 
                   +De l gGi  g+++ i Ge+ tGK+ + +q  +     k++   + ++v++t+e +  +   e +     +l+k   +++ ++    ++ ++    
  CCD22809.1 109 VTIDESLGGGIFLGNITEIFGESSTGKSQLLMQLCLsvqlpKSMGGLESKCVYITTEGDLpTTRLEGILDARPELKKHGVSQHNIFTVSCNDLIT---- 203
                 568*************************999998552222256677789********87643333334344444444333322222222222221.... PP

      ATPase  99 kdkedleelieelaeaikeikakrvviDsitgl 131
                   +e + ++   +    +e k+k ++iDsi+ +
  CCD22809.1 204 --QEHILNVQLPVLLEQNESKIKLIIIDSISHH 234
                 ..2233333333333334555555555555554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.2e-06     0.019       7      80 ..     127     237 ..     123     294 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.2e-06
      AAA_24   7 iyGpsgiGKTtlakel.............gpkplfidtek..Glksldadkfpdie..............swedfldevvel...............aa 61 
                 i+G+s +GK+ l+ +l             + k ++i te+   + +l+++   ++e              s +d       l               ++
  CCD22809.1 127 IFGESSTGKSQLLMQLclsvqlpksmgglESKCVYITTEGdlPTTRLEGILDARPElkkhgvsqhniftvSCND-------LitqehilnvqlpvllEQ 218
                 89**************9999999999999999999999993444444444444444777777755554444444.......144456669999****** PP

      AAA_24  62 eladyktlviDtideleel 80 
                 +++++k ++iD+i++ ++ 
  CCD22809.1 219 NESKIKLIIIDSISHHMRV 237
                 ***************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 3109.83
//
Query:       CCD22810.1  [L=255]
Description: hypothetical protein NDAI_0A06560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-34  117.5   1.8    5.4e-34  117.4   0.4    1.7  2  RCR        Chitin synthesis regulation, resistance to Congo r
  ------ inclusion threshold ------
      0.071   13.3   0.2       0.11   12.7   0.2    1.3  1  DUF4381    Domain of unknown function (DUF4381)
      0.098   12.7   3.7       0.19   11.8   3.7    1.5  1  SNARE      SNARE domain
       0.12   12.0   0.1       0.18   11.4   0.1    1.6  1  SARAF      SOCE-associated regulatory factor of calcium homoe
        2.7    8.6   6.2        6.5    7.3   0.1    2.4  2  PROL5-SMR  Proline-rich submaxillary gland androgen-regulated


Domain annotation for each model (and alignments):
>> RCR  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.4   0.4   1.5e-37   5.4e-34       1     119 []      46     189 ..      46     189 .. 0.85
   2 ?    0.5   0.5      0.25   8.9e+02      45     118 ..     187     214 ..     175     236 .. 0.55

  Alignments for each domain:
  == domain 1  score: 117.4 bits;  conditional E-value: 1.5e-37
         RCR   1 RWvlfaiiivlillvllltlrvakrRrrrGlqplygtgWlvsapppPsYgqsqqqynqaesltsatvptytpnaneedaGyydqeGkfhe......lqq 93 
                 RW+lf+i++v+il+++++t+rv++rRr  G+qp++gt+Wl    +pPsY+qs++qyn ++++ ++ vp+yt++an++d Gyyd++G+fh+      l++
  CCD22810.1  46 RWILFVIFVVFILILVFCTARVNRRRRVMGQQPIRGTAWL----TPPSYRQSERQYNGSQEYVEDFVPEYTETANDQDLGYYDARGEFHPnskvdyLPP 140
                 9***************************************....**************9999*********************************8555 PP

         RCR  94 Pqqayqreesaees.......................eaeyqpPagppP 119
                 Pq   ++  ++++s                         ++ +P++ppP
  CCD22810.1 141 PQLGEETLAESSNSverppnavvrdrpdtdldfrrptTSTFVRPNHPPP 189
                 5533322222222245566666667777778999999899999999999 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.25
         RCR  45 ppPsYgqsqqqynqaesltsatvptytpnaneedaGyydqeGkfhelqqPqqayqreesaeeseaeyqpPagpp 118
                 ppP+  +s+  ++++++                                              + ++++P+ pp
  CCD22810.1 187 PPPNTANSSPGGDEETE----------------------------------------------MSDFRRPDYPP 214
                 33333333222222222..............................................33344443333 PP

>> DUF4381  Domain of unknown function (DUF4381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   3.1e-05      0.11      10      46 ..      35      72 ..      30      98 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.1e-05
     DUF4381 10 epvswwPpapGwwlllaalll.llllvlalwllrrrkr 46
                +p s    a+G w+l ++ ++ +l+lv+   ++ rr+r
  CCD22810.1 35 DPFSSSSWAWGRWILFVIFVVfILILVFCTARVNRRRR 72
                566667789******95555544444444444445554 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.7   5.3e-05      0.19      31      53 .]      39      61 ..      37      61 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.3e-05
                HCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE 31 qksnRklkciillilviillvvl 53
                ++s+ +  +i+++i+v+++l+++
  CCD22810.1 39 SSSWAWGRWILFVIFVVFILILV 61
                7899*****************97 PP

>> SARAF  SOCE-associated regulatory factor of calcium homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   4.9e-05      0.18     150     204 ..      28      86 ..       8     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.9e-05
       SARAF 150 e....vkkksssssasllfvvlvllviayivykaflaaeeereaeaeggrrgegggggg 204
                 +     ++  ssss+++  ++l+++++++i+  +f++a+ +r+++  g++  +g+   +
  CCD22810.1  28 NtgivDDDPFSSSSWAWGRWILFVIFVVFILILVFCTARVNRRRRVMGQQPIRGTAWLT 86 
                 13444455567777888889999999999999999988888555444444443333222 PP

>> PROL5-SMR  Proline-rich submaxillary gland androgen-regulated family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0018       6.5       4      83 ..      49     139 ..      48     162 .. 0.66
   2 ?    0.8   4.7       0.2   7.3e+02      40      87 ..     170     222 ..     147     232 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0018
   PROL5-SMR   4 LtlvlgLwvLigCFlsgEcqRgpr..ghdprrplaps.Pd........PnkvqfgvpstlPpyglsllapplelllgpgkippsslivyil 83 
                 L ++++ ++Li  F  +  +R  r  g++p r  a   P+         n++q  v +++P y+ +   + l  +  +g  +p+s + y +
  CCD22810.1  49 LFVIFVVFILILVFCTARVNRRRRvmGQQPIRGTAWLtPPsyrqserqYNGSQEYVEDFVPEYTETANDQDLGYYDARGEFHPNSKVDYLP 139
                 6788888888888877766655442167776654322233233333437778888889999999998888999988999999999888766 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.2
   PROL5-SMR  40 d.....PnkvqfgvpstlPpyglsllapplelllgpgkippsslivyilgeil 87 
                 d     P  + f++p+++Pp + +  +   e + + ++ +p  ++++  ++i 
  CCD22810.1 170 DldfrrPTTSTFVRPNHPPPNTANSSPGGDEETEMSDFRRPDYPPNQMNTHIS 222
                 14444499999*****9998766644444455555555556555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      849  (0.0473534); expected 358.6 (0.02)
Passed Vit filter:                       117  (0.00652574); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 1820.53
//
Query:       CCD22811.1  [L=480]
Description: hypothetical protein NDAI_0A06570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-65  218.4   0.0    3.2e-63  213.2   0.0    2.6  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.2   0.0   1.8e-67   3.2e-63       3     250 ..      76     425 ..      74     431 .. 0.91

  Alignments for each domain:
  == domain 1  score: 213.2 bits;  conditional E-value: 1.8e-67
                      HHHHHHHHHHHSSS--HHHHHHHHHHHHHS.CG....H........................................................ CS
  polyprenyl_synt   3 lleealeylveagGKrlRpllvllaaealk.ee....e........................................................ 35 
                       l+++++y++ea+GK++Rpllvll ++al+  +    +                                                        
       CCD22811.1  76 TLNKVTSYYFEAEGKKIRPLLVLLLSRALSeIPieerNnikvdtldfcddtklshpsstlfdlplnnisplhilhgmkplnpltkmvnpfaetk 169
                      7899**************************5225545155566677777788888899999999999999999999****************** PP

                      .....HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHH CS
  polyprenyl_synt  36 .....eelekaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllarafellaklfekslellelfsevllqtveGql 124
                             l k+++la+ive++h+asL+hDD++D+s tRRG+p+ ++++ nk+A+++gdfll+ra   +++l  +++e++el+s+ ++++veG++
       CCD22811.1 170 fdkerGILPKQRRLAEIVEMIHTASLLHDDVIDHSGTRRGRPSGNAAFTNKMAVLAGDFLLGRATVSISRL--RNPEVVELMSNSIANLVEGEF 261
                      *99998899**************************************************************..********************* PP

                      HHHHHT..............................................TTTTCCC.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHH CS
  polyprenyl_synt 125 ldleee..............................................kdddlskfsleeyleivkyKTaylfalpvalaallagasdee 172
                      ++l+++                                              +++d    +++ yl++++ KTa+l++ +++  a+l+ga++  
       CCD22811.1 262 MQLKNTvidrdvtivsdgtkktidipdgklklephqysvslpdtnnnelahqQKVD---IAFQYYLHKTYLKTAALMSKALRSTAILSGAKPPI 352
                      ***8778899999****************************999888877433344...66*****************************99** PP

                      HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-HHHHHHHHHHTTSSHHHHHHHH CS
  polyprenyl_synt 173 lealkdiglelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelaspeqrkvlkeilgkkaekeedvk 250
                      +e+++++g+++G+ FQ++DD+lD++ +++++gKp+g D+  g +t+p+l+a++ ++    + l  i+++ +++++dv+
       CCD22811.1 353 IEECYNFGKNIGICFQLVDDLLDFSLSKKEIGKPVGVDLDLGIATAPVLYAWR-ED----ESLGPIIERSFSEPGDVE 425
                      *****************************************************.33....36*********9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3709.72
//
Query:       CCD22812.1  [L=324]
Description: hypothetical protein NDAI_0A06580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-27   95.5   1.3    6.8e-13   48.5   0.2    2.4  2  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
  ------ inclusion threshold ------
       0.16   12.1   0.3       0.45   10.6   0.1    1.8  2  YqaJ         YqaJ-like viral recombinase domain


Domain annotation for each model (and alignments):
>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.2   7.6e-17   6.8e-13      14     113 ..      25     120 ..      13     126 .. 0.78
   2 !   45.7   0.0   5.6e-16     5e-12      13     116 ..     192     291 ..     184     296 .. 0.80

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 7.6e-17
                  SSEEEEEEECTTTEEEEEESS-..HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHHHHHHHHCTTSE...EEEE CS
  Cofilin_ADF  14 tkyilfkidddkeeivveeege..tyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmlyasskdalkkelkgis...veie 106
                   ++++++ ++ +++ vve ++e  ++eel+++l+++ p Y++++   +  d        fIs+vPd++p++ kmlyas+k++l++++ g++   +++ 
   CCD22812.1  25 ESFVIVTSEISNDSTVVEFKNEfdSIEELQKHLTTKYPLYVFVKNGNSFYD--------FISYVPDQCPVRAKMLYASTKNTLVRQV-GTNnirKQLM 113
                  456666666666566666555667*******************97666666........**************************99.6553224577 PP

                  E-CGGCC CS
  Cofilin_ADF 107 atdldel 113
                   ++++e+
   CCD22812.1 114 YSEPEEF 120
                  7777775 PP

  == domain 2  score: 45.7 bits;  conditional E-value: 5.6e-16
                  .SSEEEEEEECTTTEEEEEESS-..HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHHHHHHHHCT...TSE.EE CS
  Cofilin_ADF  13 ktkyilfkidddkeeivveeege..tyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmlyasskdalkkelk...gis.ve 104
                  + + i+f+id  +ee+ + + +   + +el  el+ s+p Y +y+          rs   fI+++P+++++k++m+yas+++ + k l+   gi+ v+
   CCD22812.1 192 ESNVIIFGIDLANEEVDIIKHSHvsSPKEL--ELEVSQPSYTIYRN---------RSLNYFIYSCPSGSKVKERMVYASNRSGFIKYLQeveGITfVK 278
                  4689**************994446776773..466689*******3.........45668*******99****************9666222666645 PP

                  .EEE-CGGCCSHH CS
  Cofilin_ADF 105 .ieatdldeltee 116
                   ie+ d+del+ +
   CCD22812.1 279 iIEIGDPDELELS 291
                  7*********976 PP

>> YqaJ  YqaJ-like viral recombinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.32   2.8e+03      98     116 ..      31      48 ..      20      66 .. 0.72
   2 ?   10.6   0.1   5.1e-05      0.45      42     127 ..     109     241 ..      70     257 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.32
        YqaJ  98 hasidalkrrllEikspfe 116
                 + +i+  +  ++E k++f 
  CCD22812.1  31 TSEIS-NDSTVVEFKNEFD 48 
                 44555.6789999999997 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 5.1e-05
        YqaJ  42 ehefkenaftawGtelEplaraeyelatg.........dkvrdsgglfespsdkflgaspDgii................................... 96 
                 +++   +++ ++G++ E+ a   ye+             ++++++ l+++++ + l+   +g+                                    
  CCD22812.1 109 RKQLMYSEPEEFGKHFEEEAVGMYEKNSSlltdseravFEIEEQQRLMKKSRGHKLVSQTNGVTatltfnvethgasigdvleesnviifgidlaneev 207
                 33335566667****************99999999888888889******9************99******************9999999999999999 PP

        YqaJ  97 .....shasidalkrrllEikspfealyvstklgrq 127
                      sh s    k+  lE+++p+ + y +  l++ 
  CCD22812.1 208 diikhSHVS--SPKELELEVSQPSYTIYRNRSLNYF 241
                 998444444..558999********99999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2342.69
//
Query:       CCD22813.1  [L=2369]
Description: hypothetical protein NDAI_0A06590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-54  183.8   0.0    1.2e-53  182.5   0.0    1.7  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    6.8e-26   90.1   4.4    2.8e-25   88.2   0.2    3.6  3  UME             UME (NUC010) domain
    6.2e-15   54.7   1.8    3.2e-12   46.0   0.0    3.6  3  FATC            FATC domain
    0.00025   20.4   4.3    0.00025   20.4   4.3    2.6  2  FAT             FAT domain
  ------ inclusion threshold ------
      0.037   14.0   2.7        3.7    7.5   0.0    3.2  3  PhaP_Bmeg       Polyhydroxyalkanoic acid inclusion protein (P
        0.3   11.0   1.7        3.1    7.7   0.0    3.5  4  DUF3385         Domain of unknown function (DUF3385)


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.5   0.0   4.2e-57   1.2e-53       3     243 ..    2077    2310 ..    2075    2316 .. 0.91

  Alignments for each domain:
  == domain 1  score: 182.5 bits;  conditional E-value: 4.2e-57
                      EEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHHHHHHCHCH CS
  PI3_PI4_kinase    3 agiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasveslrvaldkk 95  
                      ++++k ++d rqd+ ++q+ ++md +lsk+ +  +r l ++tysv++l ++cg+ie v+++ t++s+   k+e+  ++ ++ +     ++ ++
      CCD22813.1 2077 GIMCK-KEDVRQDNQYMQFATTMDFLLSKDVESMKRYLGITTYSVLSLREDCGLIEIVPNVITLRSIFVTKYEG--MKVKYNL-----KSLYE 2161
                      55555.9*****************************************************************86..3333333.....44566 PP

                      CCHHHHHCC...HHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHC CS
  PI3_PI4_kinase   96 klkkekklk...fekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewk 185 
                       +++++  +   f+k+++lk++ +l+++F +++p++ +w++ar++++rs+a++ +++yilg+gDRh +Nil+d +sg++ h+Df ++l +++k
      CCD22813.1 2162 SWQNTSPGQrigFYKEQLLKFPPVLYEWFLDTFPDPINWFNARNRYARSYAVMGMVGYILGLGDRHCENILLDVESGNVLHVDF-DCLFEKGK 2253
                      666666666777************************************************************************.6666**** PP

                      SSSS-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH CS
  PI3_PI4_kinase  186 llpfpqekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkd 243 
                      +lp+p e vPfrlt++l +a++ ++  g+f+++ e +l+++r ++  l+++++ +++d
      CCD22813.1 2254 RLPIP-EIVPFRLTQNLYDALGITGTDGTFKKTSEVTLSLMRDNEVALMNVIETIMYD 2310
                      *****.**********************************************996665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       3.3   9.8e+03      55      94 ..     614     656 ..     591     661 .. 0.71
   2 !   88.2   0.2   9.4e-29   2.8e-25       2     102 .]     884     985 ..     883     985 .. 0.98
   3 ?    1.5   0.0     0.093   2.8e+02      26      68 ..    1681    1725 ..    1671    1730 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.3
         UME  55 macLqsalei...delrsaalsvWatllsnlededleplleqt 94 
                 +a+L   l+    ++l+++ +  W  l  + + e + +ll ++
  CCD22813.1 614 TATLIKFLQAnneENLTEVWVISWTQLTLTTSGEVFDSLLLKL 656
                 5555555554333688888888888888888777777776555 PP

  == domain 2  score: 88.2 bits;  conditional E-value: 9.4e-29
         UME   2 Lqqhilgiltrlseklndshgkkslaekkraikaleeliklagss.issalpqimacLqsaleidelrsaalsvWatllsnlededleplleqtfaliv 99 
                 L q+ilgi++ +s++++d+ g++++ ek r+++++++lik+a+++ i sal+qi++cLq++lei e+r+ al++W  l++nl+de+l++++++ +a i+
  CCD22813.1 884 LLQNILGIFQVFSSDIHDVGGRTTYYEKLRVVNGISFLIKYASKKaIISALAQISICLQTGLEICEVRYSALRCWYLLIENLNDEELSTIIDAFIAYIL 982
                 6699**************************************9998***************************************************** PP

         UME 100 qlw 102
                 q w
  CCD22813.1 983 QQW 985
                 *99 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.093
         UME   26 laekkraikaleeliklagss..issalpqimacLqsaleidelr 68  
                    +kk+ i+   e+ +l++ +  +++a   +m cL ++ +++el+
  CCD22813.1 1681 EYSKKELINTFFEITQLCRMNsrLDIACESLMFCLENGHSQAELE 1725
                  45899999999999999987777*****************99997 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.057   1.7e+02       6      18 ..     386     398 ..     383     399 .. 0.87
   2 ?    3.1   0.3     0.028        84       6      28 ..     612     637 ..     611     638 .. 0.87
   3 !   46.0   0.0   1.1e-15   3.2e-12       2      32 .]    2339    2369 .]    2339    2369 .] 0.99

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.057
        FATC   6 qQVdrLIkeATdp 18 
                  Q+  LI++AT p
  CCD22813.1 386 SQTTSLIEMATTP 398
                 69999******87 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.028
        FATC   6 qQVdrLI..keATdpeNLaqmyi.GW 28 
                 qQ+  LI   +A + eNL   ++  W
  CCD22813.1 612 QQTATLIkfLQANNEENLTEVWViSW 637
                 89*****888********99997555 PP

  == domain 3  score: 46.0 bits;  conditional E-value: 1.1e-15
        FATC    2 LsveqQVdrLIkeATdpeNLaqmyiGWcPww 32  
                  Lsv++QVd LI+e T  +NL++myiGW P+w
  CCD22813.1 2339 LSVPGQVDTLIQESTTDDNLGKMYIGWLPFW 2369
                  8****************************** PP

>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.4     0.076   2.3e+02     203     283 ..    1380    1468 ..    1343    1513 .. 0.65
   2 !   20.4   4.3   8.3e-08   0.00025      40     346 .]    1583    1854 ..    1550    1854 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.076
                  HHHHSSCCHHHHCCTSSCCCSS-SS---.................HH.HHCCCTCCC.........CCCCCCCCT.S...-SSCCHHHHCCHHCTC CS
         FAT  203 qkealqkLreftsellekkeelqsgleaq.....keptnleeftkll.arcylkkGe.........wqealqkldwseekieeilqsysaateidp 283 
                  ++e  +k+ + ++e l++ e        +     +  tn  e ++l   +cy + G+          ++++++    +++i++il+s+s+ + i++
  CCD22813.1 1380 REEKTLKMLKKVEEFLHSIE-------PEllarrSLETNSFERSALFlEQCYRENGKnlgntellcNLQKTYEEIGDVDSIDGILKSFSTGNLISK 1468
                  45555555555555666532.......22222245667777777777799******999999999944444444568899********99775544 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 8.3e-08
                  CHH--CCHCHHCCCHCCCCCCCCCTS---SCCCCCHHHHHCCCCCHHHCHHCCHHCSS-..---TTTTTTT----TTS-TTTGCCCTTTCCCCTCCC CS
         FAT   40 lhrnqfdeakeliekarqlldtelsalvgesynraygvlvrvQmlaEleeiiqykqkls..sseklksllktWrkRlpgcqdnvevwqdiltvRslv 134 
                  +   ++ + k++i+++  l+ t l+a ++       +++ + + +++l+ +  +   ++  ++ +     + +  R ++++  +e  + +l++R+ +
  CCD22813.1 1583 VASGDLHKTKKYIDQCFALIGTHLTAASSG-----TTLVKKQNLVMKLHSLYDILLLSEkdNEYQYHDAISVLDFRMRNIKAAFEPNHYLLSIRKSF 1674
                  445889999*****************9988.....56666666677888888888877765566667778999*********************987 PP

                  H..CCCHCHCCS-STTCCCCCCCCHCHHHHCCSTTHHCCCCCHCTT.....TT.TSSCCCHHHHHHHCCHHHHHSSCCHHHHCCTSSCCCSS-SS-- CS
         FAT  135 l..spiedllkgvkaemwlkfanlarksgrlslAekaLkelleedpeewlprappevvyaylKylwssgeqkealqkLreftsellekkeelqsgle 229 
                      ++e+  k+  +++  ++ +l+r + rl++A ++L   le+          ++  ++ + +lw++ge + al+ L e++ + + +k        
  CCD22813.1 1675 GllHKQEY-SKKELINTFFEITQLCRMNSRLDIACESLMFCLENGH--------SQAELEFAEILWKQGENDRALK-LVEEIHQRFGRK-------- 1753
                  53255555.9999999999***************999999966666........8999*************99986.556666333332........ PP

                  -............HHHHCCCTCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCCCHSTTCCCCHHHHHCCHHHHHHSSSS.S-TCCHHHHCCT..C CS
         FAT  230 aqkeptnleeftkllarcylkkGewqealqkldwseekieeilqsysaateidpswykawhtwalfnfevvskeeeqkeeeepedlqeyvvpavkgf 326 
                       + +++  +  + ++lk  ew+   ++       +e+i ++y++   +dp+w k +++ +++  + +++   +   ++     ++  ++v+ f
  CCD22813.1 1754 -----QDVKKRDR--SAVLLKYTEWLDLSNNS-----ASEQIIKQYKEIFILDPTWDKPYYSIGQYFARLLERKIAE-GYITDG---QLEYKSVSYF 1834
                  .....22223233..5699********99994.....59************************99877777666333.333344...4458889999 PP

                  CHHHHTTTSSTTTCHHHHHC CS
         FAT  327 lksislssenslqdtlRLLt 346 
                  l +   +s + ++ +++++t
  CCD22813.1 1835 LLAFEKNSIKVRENLPKVIT 1854
                  99999888888888888876 PP

>> PhaP_Bmeg  Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2    0.0071        21      16      53 ..    1365    1402 ..    1355    1473 .. 0.75
   2 ?   -3.9   0.0       3.7   1.1e+04     109     141 ..    1667    1699 ..    1640    1701 .. 0.70
   3 ?    7.5   0.0    0.0012       3.7      45      91 ..    1960    2006 ..    1954    2008 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0071
   PhaP_Bmeg   16 qweeslerfaslskqvEqltLkalkqqqdlvkeltkal 53  
                  ++ +  ++++ +s  +E+ tLk lk+++++++++  +l
  CCD22813.1 1365 NFRQKYHESNGTSIIREEKTLKMLKKVEEFLHSIEPEL 1402
                  5666677777778889****************998665 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.7
   PhaP_Bmeg  109 lspsKssldllkkaeeqleetvkslieqqkkrR 141 
                  l  ++ s+ ll+k e   +e ++ ++e  +  R
  CCD22813.1 1667 LLSIRKSFGLLHKQEYSKKELINTFFEITQLCR 1699
                  455677889999999999999999999888766 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0012
   PhaP_Bmeg   45 lvkeltkalselekeskqltaeledqlqktvenlrskaGnkvednie 91  
                    ++ ++++s l  +s +lta l +   + v+n+ s+ G ++e +++
  CCD22813.1 1960 KYRHHRSQVSALVDDSSKLTAALTKVCLQDVKNISSRSGRSLEKDFN 2006
                  4567899**********************************999886 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1         2   5.9e+03      65     138 ..     626     702 ..     606     719 .. 0.54
   2 ?   -1.0   0.2      0.49   1.5e+03      89     136 ..     959    1006 ..     925    1023 .. 0.64
   3 ?    7.7   0.0     0.001       3.1      10      54 ..    1096    1142 ..    1091    1188 .. 0.82
   4 ?   -2.6   0.0       1.5   4.6e+03      77     133 ..    1270    1326 ..    1256    1344 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2
     DUF3385  65 etdlsll.....mvglspsneeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipallsvir 138
                 e++l+++     ++ + +++ e++ +  + +L  i++ ++++    ++v+  +  f  l     ++L+ i+p ll+ + 
  CCD22813.1 626 EENLTEVwviswTQLTLTTSGEVFDSLLL-KLFDIFSSKKYALFSMMAVQIKIMAFM-LHKTPYTLLSPILPILLRQLG 702
                 44444444344233333344666666433.457777666666555555553222222.334447888888888887765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.49
     DUF3385   89 naLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipallsv 136 
                    L++ l+d+ ls+   a +  i++  ++ ++k  +++ +i+  l+++
  CCD22813.1  959 YLLIENLNDEELSTIIDAFIAYILQQWSQFDSKTKTIVYEILDVLVKT 1006
                  456666677777777777766666666666666666666665555554 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.001
     DUF3385   10 qLLelLlnilkte.q.sqsirrevikllGilGALDPykhkqveerae 54  
                   LLe Ll+  ++  + + ++ ++ ++++G++G  D  k k +e+++ 
  CCD22813.1 1096 MLLEALLRTSQKFrTiDDELCKKSARCIGLIGTFDITKNKFNERKSV 1142
                  689999998888755789999******************99987643 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 1.5
     DUF3385   77 psn.eeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipal 133 
                  ++  +e  p  v+++L+r  +d sls+     + +++ + ++ g+++  ++++ii ++
  CCD22813.1 1270 KTGtDETHPLHVFSSLIRE-DDGSLSNFLLPYIITVIIVKEETGSSSSDLMNNIIMEF 1326
                  4444899999999998886.69999999999999999999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.11u 0.31s 00:00:01.42 Elapsed: 00:00:00.48
# Mc/sec: 14753.67
//
Query:       CCD22814.1  [L=145]
Description: hypothetical protein NDAI_0A06600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-34  116.4   0.1    8.2e-34  115.7   0.1    1.4  1  CKS             Cyclin-dependent kinase regulatory subunit
    0.00015   21.7   1.7     0.0002   21.3   1.7    1.3  1  SUIM_assoc      Unstructured region C-term to UIM in Ataxin3
  ------ inclusion threshold ------
        4.2    6.9  13.8        5.8    6.5  13.8    1.3  1  Spt20           Spt20 family


Domain annotation for each model (and alignments):
>> CKS  Cyclin-dependent kinase regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.7   0.1   1.4e-37   8.2e-34       1      67 [.      28     103 ..      28     104 .. 0.96

  Alignments for each domain:
  == domain 1  score: 115.7 bits;  conditional E-value: 1.4e-37
         CKS   1 ieYSdkyeddeyeYRhViLpkellkkipks.........rlLsekewraLgIqqskgWehyeihkpephiLlfrrp 67 
                 i+YS++y+dd++eYRhV+Lpk +lk ip++         r+L+e+ewr+LgI+qs+gWehye+h+pephiLlf+rp
  CCD22814.1  28 IHYSPRYSDDTHEYRHVMLPKAMLKVIPSDyfnsdvgtlRILTEDEWRGLGITQSLGWEHYECHAPEPHILLFKRP 103
                 8****************************7777788889************************************9 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   1.7   3.4e-08    0.0002      29      51 ..     108     139 ..      46     144 .. 0.59

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.4e-08
  SUIM_assoc  29 K...........qeqqqqqqqqqqdppgqlshpr 51 
                             +  qqqqqqqqq++++q+  ++
  CCD22814.1 108 AelraaaaaaasN--QQQQQQQQQQQQQQTQTVQ 139
                 0555555555332..4444444444444444444 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  13.8   0.00096       5.8     112     132 ..     119     139 ..     100     145 .] 0.51

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00096
       Spt20 112 qnqqqqqqqqqqqqqqqqqqe 132
                 +nqqqqqqqqqqqqqq q+ +
  CCD22814.1 119 SNQQQQQQQQQQQQQQTQTVQ 139
                 233333333333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3184  (0.177589); expected 358.6 (0.02)
Passed bias filter:                      934  (0.0520944); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1077.77
//
Query:       CCD22815.1  [L=777]
Description: hypothetical protein NDAI_0A06610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-65  221.0   3.9    2.2e-65  220.4   3.9    1.3  1  PRMT5_TIM  PRMT5 TIM barrel domain
    4.4e-59  199.2   0.4      1e-58  198.0   0.1    1.8  2  PRMT5      PRMT5 arginine-N-methyltransferase
    2.5e-57  193.6   4.8    2.5e-57  193.6   4.8    1.7  2  PRMT5_C    PRMT5 oligomerisation domain
  ------ inclusion threshold ------
      0.038   12.6   0.3      0.087   11.4   0.0    1.7  2  GP120      Envelope glycoprotein GP120


Domain annotation for each model (and alignments):
>> PRMT5_TIM  PRMT5 TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.4   3.9     5e-69   2.2e-65       1     255 [.      43     318 ..      43     319 .. 0.96

  Alignments for each domain:
  == domain 1  score: 220.4 bits;  conditional E-value: 5e-69
                 T-SEEEEETT-CCHHT-...................SSSTTCCC--S-SS--CCCS-H.....HHHHHHEEEE--TT--TT-SSHHHHHHHHHHHHHHH CS
   PRMT5_TIM   1 gydfvvlpltnarfkde.................kkdeeadaerrvppltrsdvvlsp.....sdwsqsviglisewidldsedeeirkdsekvLkkel 77 
                 +yd+++lp+t+ r+kd                  + ++ ++++ ++p+++++d++++p     ++ s s igl+s+w++l++  +  r++s++vL +e+
  CCD22815.1  43 KYDYLLLPITSSRYKDIvdktvkayraasigdseHSKNISPKSLTIPKPQLQDICIPPfhdngNKSSFSFIGLLSSWLELEDGTPLNREISFQVLLNEC 141
                 69******************************987788899999***************9999999999****************************** PP

                 HHHHHHT-SEEEEE--SS..--HHHHHHHHH.....HHCCSSS-EEEEEEESSGGGCTT-STCTTS----SCCGHHHHHHHHHHHHTTT-TCEEEECC- CS
   PRMT5_TIM  78 ayaaylglralilpgpslreklanyaraiss.....alesanavtisisiplaedkeleeeeetlanalegdllstWelWntirtlcgyssrLsVaLeL 171
                 +ya++ g+++lil++p++++ +++y ++is+      +++  ++ +sis+pl+ed+               d+l++WelWntir++c+y+++L+V+L+L
  CCD22815.1 142 KYARFAGIEKLILAPPRNLKTIQSYSQIISRllntrEITNVPPLVLSISLPLYEDS---------------DSLAAWELWNTIRKICNYHKSLTVSLAL 225
                 *******************************888777777777999*********8...............9*************************** PP

                 -.CCGTSHHHHCCCCCTTEEEEEEECGG-EESTTT-EE--HHHHHHHHHHHHTT.........-EEEEESSSTTTTTCCCHCHHHHHHHHHHHH CS
   PRMT5_TIM 172 p.kelpskeelerWlaEPvkliilsasiFltnkkgypvLskahqallkeffkln.........vkiiLsgvekkaksskgdvkaylkyikyllk 255
                 p +++p++ +l+rWl+EPv+++++s+s+F+tn+++ypvL+k +q+++k+f++ n         + iiL++++k  +++k +++ y++yi+yllk
  CCD22815.1 226 PkIKTPTH-VLSRWLSEPVSCLLISSSVFATNQYEYPVLHKYNQNIIKKFQEINgnsqtisgeLVIILHSLDKSGDQIKMEESVYVDYINYLLK 318
                 *8888887.***********************************************************************************98 PP

>> PRMT5  PRMT5 arginine-N-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.6   7.1e+03     115     140 ..      21      46 ..      14      49 .. 0.70
   2 !  198.0   0.1   2.3e-62     1e-58       9     173 .]     335     499 ..     327     499 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.6
                 HHTTCCGCEEEES-CCCCCHCC-ECE CS
       PRMT5 115 eekWeekveviksdmrelkaeekvdl 140
                 ++  ++kve++ ++  +l++++k+d 
  CCD22815.1  21 NSMHNSKVEIMAKNQADLNKSTKYDY 46 
                 44556788888888888888888775 PP

  == domain 2  score: 198.0 bits;  conditional E-value: 2.3e-62
                 CGBT-EEEE--TTTS---HHHHHHHCC-CCHHHHHHHHHHHHHHHHCTCCGTCC.-EEEEEEES-TTSHHHHHHHHHHHHHC.CCEEEEEEEES-HHHH CS
       PRMT5   9 eyedvlqapLqPlsdnLesatYevFEkdkvKYelYeeAiekalsdlkkekkkksekklvilvvGaGRGplvdralkaleetk.vtkvkivavEKnpnav 106
                   ++ l+ pLqP+++ L++++Y+vFE+d+vKY+lYe+ i +a+ dl  +++ +  k+l++l++GaGRGplv++++ ++++++  ++++i+a+EKnp+a+
  CCD22815.1 335 LSQPSLMPPLQPHKETLSNSIYSVFENDTVKYDLYEQSIDEAMLDLIGNNTMD--KNLIVLIAGAGRGPLVNKVFLIAKRHGiLSHIQIIALEKNPQAY 431
                 56789*****************************************9888655..59************************9778************** PP

                 HHHHHHHHHHTTCCGCEEEES-CCCCCHCC.-ECEEEE---BTTBCCCSHHHHHHCCGGGCECC.EEEE CS
       PRMT5 107 vtLqkkvneekWeekveviksdmrelkaee.kvdllvsELLGSfgdnELsPEcldgvqkflkee.gisi 173
                 ++Lqk+ n++kWe+kv+++ +dmr ++ ++ kvdl++sELLGSfg+nELsPEcl +++k +++e +i+i
  CCD22815.1 432 LYLQKR-NFDKWENKVDLVLEDMRFWSDSSiKVDLCISELLGSFGCNELSPECLWNIEKCHSKEsTIFI 499
                 ******.*******************87655****************************9999878887 PP

>> PRMT5_C  PRMT5 oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.73   3.3e+03       7      39 ..     241     272 ..     218     281 .. 0.74
   2 !  193.6   4.8   5.6e-61   2.5e-57       1     176 [.     502     774 ..     502     775 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.73
                 EEEE-HHHHHHHHT-HHHCS-EEEB--S-EESS CS
     PRMT5_C   7 aPisapklyqklksekaletpyvvklvkvdkls 39 
                 +P+s+  + +++ +++++e p v++ ++ ++++
  CCD22815.1 241 EPVSCLLISSSVFATNQYEYP-VLHKYNQNIIK 272
                 688888888888888888877.44544444444 PP

  == domain 2  score: 193.6 bits;  conditional E-value: 5.6e-61
                 EEEEEEEEEE-HHHHHHHHT.-HHHCS-EEEB--S-EESSSS-EEEEEEESS-TTSS......-S-EEEEEEEEE-SSEEEEEEEEEEEEEEETTEEEE CS
     PRMT5_C   1 sytsyiaPisapklyqklks.ekaletpyvvklvkvdklsekvkevweFehpneeke.....eenersktlefkikekaeihGlagyFeavLYkdvelS 93 
                 sy+syiaPis+p lyq+l + e+ le+p+v +++++++ls+kv+++w+F+hp + ++     ++++r++t+efkik+++ ih+l+g+F+a+LYk  ++S
  CCD22815.1 502 SYSSYIAPISSPILYQSLATkESGLESPWVAHNIPYTFLSSKVNQLWTFKHPARPNTieneiSNFSRNMTTEFKIKHRGDIHALMGFFSAELYKGSKIS 600
                 7*****************9967889*****************************99999999999********************************** PP

                 -SCCC................--TT-TS---EEEEEEEEEEE-TTEEEEEEEEEEEESSEEEEEEEEEECSTTS-E....................... CS
     PRMT5_C  94 ilPet.............keaktkdliSWfpiffPlkkpllvkddselevslwRktdekkvWYEWsvesfvylvls....................... 156
                 i+P++               +kt++++SW+pi+fPl  p++v+d++e++v ++R ++ +kvWYEWs+esfvy+  s                       
  CCD22815.1 601 IVPNElpikflsqddsepNIQKTHGMYSWSPIVFPLAYPFSVSDNTEITVLFSRVHSFEKVWYEWSLESFVYVIISdnsstklkyqeslspkqnntede 699
                 ******************9*****************************************************9999*********************** PP

                 ...............................................................---BSGGGSS-- CS
     PRMT5_C 157 .......................................................hvrvkvgvselhnvngrays 176
                                                                        h ++++gvs+lhnvng a+ 
  CCD22815.1 700 fsstttsnflpvfengwqsvselyqsvapnaaaspifnldsaqqysprleeipevHAKIRTGVSKLHNVNGLAFH 774
                 **********************************************************************98876 PP

>> GP120  Envelope glycoprotein GP120
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2      0.53   2.4e+03      68      99 ..     203     234 ..     200     252 .. 0.84
   2 ?   11.4   0.0   1.9e-05     0.087      19     116 ..     406     504 ..     402     525 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.53
                 HHHHHHHSXXSEEEEEBSSSEEEEEXTTXXEE CS
       GP120  68 islfetslkpcvkltplcvalkcsdlkndttt 99 
                 ++l++t  k c     l v+l   ++k+ t  
  CCD22815.1 203 WELWNTIRKICNYHKSLTVSLALPKIKTPTHV 234
                 99*******************99999988876 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 1.9e-05
                 XEEEXXHHHHHHHHSXBXXXSSXXXEEESEEEEEETSSTSSHHHHHHHHHHHHHHHSXXSEEEEEBSSSEEEEEXTTXX..EE.............EEE CS
       GP120  19 lfcatkvrdvwatiaclpddddyqevvlnvteafdawkndvveqavedvislfetslkpcvkltplcvalkcsdlkndt..ttpnprtsssttsrpnss 115
                 +f  +k + + + i+ +  ++++q  +     +fd w+n+v + + ed+    ++s+k  + ++ l  ++ c +l  +   +  + ++  st   p+s 
  CCD22815.1 406 VFLIAKRHGILSHIQIIALEKNPQAYLYLQKRNFDKWENKV-DLVLEDMRFWSDSSIKVDLCISELLGSFGCNELSPEClwNIEKCHSKESTIFIPQSY 503
                 67788999999***************9999*********85.8899***9999*********************9988722333344444555555554 PP

                 E CS
       GP120 116 a 116
                 +
  CCD22815.1 504 S 504
                 4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 5552.50
//
Query:       CCD22816.1  [L=747]
Description: hypothetical protein NDAI_0A06620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-53  180.3   0.0    7.9e-53  179.5   0.0    1.4  1  Pkinase         Protein kinase domain
    1.2e-22   80.4   0.0    2.6e-22   79.3   0.0    1.6  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00042   20.0   0.2       0.95    9.0   0.1    2.5  2  FTA2            Kinetochore Sim4 complex subunit FTA2
     0.0062   16.5   0.0       0.97    9.3   0.0    2.2  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.026   13.8   0.1       0.34   10.2   0.0    2.4  3  Kinase-like     Kinase-like
       0.09   12.1   0.2        3.5    6.9   0.0    2.3  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
       0.11   11.3   0.1       0.32    9.7   0.0    1.7  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.5   0.0   3.1e-56   7.9e-53       1     264 []     422     699 ..     422     699 .. 0.92

  Alignments for each domain:
  == domain 1  score: 179.5 bits;  conditional E-value: 3.1e-56
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS..-- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgs..ls 96 
                 yek+e lG+G+++kVyk++ ++++ki+A+K+++ ++ ++++   +  Ei++l+kl   p++vrl+++  ++  lyl++e+ +++ l ++l++++   l+
  CCD22816.1 422 YEKIELLGRGGSSKVYKVK-NDQNKIFALKRVSFDEFDDSSIAGFKGEIELLEKLCkEPRVVRLFDYQMSSGVLYLIMECGDND-LSQVLNQRMGfpLD 518
                 7999***************.69*******************9***********9987************************977.99999977664688 PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHH................TTSCBSH CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...ltsfvgtseYlAPEvl................keneysk 176
                 ++ ++  ++++l+ ++ +H++gi+H DlKp+N+ +  kg lK++DFG+a+ +  ++     +s++gt++Y+APE l                ++ +++k
  CCD22816.1 519 MDFLRYHVRELLKCVKAVHDAGIVHSDLKPANFVFI-KGLLKLIDFGIANVIPDHTVnvyRESQIGTPNYMAPETLiatnhsieqsdlnkemSKWKVGK 616
                 999*****************************9999.9***************998899999**************9**9999988877655556779* PP

                 HHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 177 kvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++DvWs+G+i+y++++g+pp++g +g+++  ++++   ++       +e ++++++i+ +++dl+k +l +dp kR+++++ll +p++
  CCD22816.1 617 PSDVWSCGCIIYQMIYGRPPYAGFQGQNRLLAIMNP--EVKV---IFSERTAKDEKIPTSLIDLMKACLLRDPAKRWSIDKLLCSPFF 699
                 **********************99999977777776..3333...35679999*********************************98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0     1e-25   2.6e-22       4     255 ..     425     693 ..     422     696 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 1e-25
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEES.TTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlk.eeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                   + lG+G  +kV++ + +     ++   a+K ++ +e ++++ + +  e+++++kl k p++v+l    ++++ l++++e +  +dL++ L+++   +
   CCD22816.1 425 IELLGRGGSSKVYKVKND-----QNKIFALKRVSfDEFDDSSIAGFKGEIELLEKLcKEPRVVRLFDYQMSSGVLYLIME-CGDNDLSQVLNQRMGFP 516
                  578999999999998877.....7788999999537788888999***********************************.7889************* PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE................ CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk................ 181
                  l+++ l   + ++ k ++ +++  +vH dl   N +   + + k+ DfG+a+ i ++   v +e++    ++mapE+l +++                
   CCD22816.1 517 LDMDFLRYHVRELLKCVKAVHDAGIVHSDLKPANFVFI-KGLLKLIDFGIANVIPDHTVNVYRESQIGTPNYMAPETLIATNhsieqsdlnkemskwk 613
                  *******************************9997665.799************888888999999999*******9987777899999****99999 PP

                  EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHH.......HHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 182 ftsksDvWsfGvllwEiftlgespypglknee.......vleklkegkrlekpekcpeelyelmkkcweedpeeRptfsel 255
                  + + sDvWs G +++ ++  g+ py+g++ ++          k+  ++r +k ek+p++l +lmk c+ +dp++R ++ +l
   CCD22816.1 614 VGKPSDVWSCGCIIYQMIY-GRPPYAGFQGQNrllaimnPEVKVIFSERTAKDEKIPTSLIDLMKACLLRDPAKRWSIDKL 693
                  9999************998.********7666333321111233457899*************************999887 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1   0.00037      0.95      23      56 ..     421     455 ..     390     487 .. 0.79
   2 !    8.4   0.0   0.00057       1.5     176     212 ..     524     564 ..     516     567 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00037
        FTA2  23 diefleyLgkglhsiVlkvkirgk.eYALKlFrfl 56 
                 d+e +e+Lg+g +s V+kvk +++ ++ALK   f 
  CCD22816.1 421 DYEKIELLGRGGSSKVYKVKNDQNkIFALKRVSFD 455
                 46779***************987659****64444 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00057
        FTA2 176 sqlpkllrdlkklhklgIvvrDlkeenyi..dg..kLvDls 212
                  ++++ll+ +k +h +gIv+ Dlk+ n++  +g  kL+D++
  CCD22816.1 524 YHVRELLKCVKAVHDAGIVHSDLKPANFVfiKGllKLIDFG 564
                 5899***********************86445544677776 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0032       8.1       2     106 ..     425     537 ..     424     539 .. 0.68
   2 !    9.3   0.0   0.00038      0.97     155     198 ..     528     568 ..     501     571 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0032
                 EEEE--.SSCEEEEEEETT.--EEEEEE-TT....S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS....HHHHHHH CS
         APH   2 vrelsggasnrtylvttpa.gryvlrrnppa....raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr....klsaaql 91 
                 ++ l+ g s+++y+v+ ++ + ++l+r++       + + + +e +ll  L k  ++v ++++++++ ++++l ++       ++l +    +l+++ l
  CCD22816.1 425 IELLGRGGSSKVYKVKNDQnKIFALKRVSFDefddSSIAGFKGEIELLEKLCKE-PRVVRLFDYQMSSGVLYLIMECGDNDLSQVLNQrmgfPLDMDFL 522
                 6778999999*********889*****777763333445555666666666666.36999999999999888877666555555555566666666666 PP

                 HHHHHHHHHHHCCHH CS
         APH  92 pellealgeflaalh 106
                 +  +++l  + +a+h
  CCD22816.1 523 RYHVRELLKCVKAVH 537
                 666666666666666 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00038
                 HHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 155 alaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 +l++ + +  +++++H Dl+p N+++   +g +  +iDf+ a +
  CCD22816.1 528 ELLKCVKAVHDAGIVHSDLKPANFVFI--KGLL-KLIDFGIANV 568
                 444444445689***************..7777.79***98865 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       2.3   5.8e+03     120     155 ..     138     175 ..     137     180 .. 0.52
   2 ?    0.3   0.0      0.13   3.4e+02      16      50 ..     424     458 ..     421     464 .. 0.83
   3 ?   10.2   0.0   0.00013      0.34     152     243 ..     528     630 ..     493     640 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.3
  Kinase-like 120 asvdleilnkvlqkrset..hkkletiarlllTlqlir 155
                  ++++l++++ + q+ +e+   +  e   r  lT +l r
   CCD22816.1 138 MESNLQRIKVLQQSMKEEltSRYVERRNRRFLTSRLTR 175
                  55666665444444444444445555555566655555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.13
  Kinase-like  16 rgellkkgdrsvvfevkdqetgeplavkvfllps.e 50 
                  + ell++g++s+v++vk+ + ++ +a+k  ++ + +
   CCD22816.1 424 KIELLGRGGSSKVYKVKNDQ-NKIFALKRVSFDEfD 458
                  6789*************988.899999988877755 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00013
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldekgglmlggft..aLvragtkvvl..seve.kgfaPpEllgsrgg.......ytrknktkmthkldaWqlG 237
                  +l++ +   ++ g+vh ++++ n+++  kg l+l +f+  + + + t  v   s++    +  pE+l + +         ++  k k+  + d+W  G
   CCD22816.1 528 ELLKCVKAVHDAGIVHSDLKPANFVFI-KGLLKLIDFGiaNVIPDHTVNVYreSQIGtPNYMAPETLIATNHsieqsdlNKEMSKWKVGKPSDVWSCG 624
                  455789999****************97.7999999997224444444444322444464555556554444434333322333455566788999999 PP

  Kinase-like 238 lviyri 243
                    iy +
   CCD22816.1 625 CIIYQM 630
                  999988 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0014       3.5     104     166 ..     504     563 ..     495     568 .. 0.77
   2 ?    2.8   0.0     0.025        63     152     179 ..     660     689 ..     653     694 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0014
         Kdo 104 dLedllakwae..laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 dL ++l++     l+    r +++++ + ++  h+ag+ H dl + n+ + ++      + liD+
  CCD22816.1 504 DLSQVLNQRMGfpLDMDFLRYHVRELLKCVKAVHDAGIVHSDLKPANFVFIKGL-----LKLIDF 563
                 66666666444556666677888888999******************9887665.....666666 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.025
         Kdo 152 qqee.eeeaeiwliDldk.arlrlradrwr 179
                 + ++ +e++  +liDl k + lr +a+rw+
  CCD22816.1 660 ERTAkDEKIPTSLIDLMKaCLLRDPAKRWS 689
                 4444489999******994568999****7 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.2   3.1e+03     129     169 ..     396     445 ..     363     456 .. 0.55
   2 ?    9.7   0.0   0.00012      0.32     319     394 ..     533     601 ..     523     607 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.2
  Pkinase_fungal 129 ei.....kaeeeketeklele..eplarqraivgRg..Ttcwrarkeger 169
                     ei      a+++k+ +kl +    + +++ ++ gRg    ++++++++++
      CCD22816.1 396 EIiepfiYAQKKKTGKKLSITvnGIDYEKIELLGRGgsSKVYKVKNDQNK 445
                     33566663344444445554441444555578888733458888886655 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00012
  Pkinase_fungal 319 hrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyr 394
                      +  + +agi+H D    N ++       +    LiD+ +a  + d++ +  ++ ++GT+++ma e l +++Hs+ 
      CCD22816.1 533 VKAVH-DAGIVHSDLKPANFVFI------KGLLKLIDFGIANVIPDHTVNVYRESQIGTPNYMAPETLIATNHSIE 601
                     55667.9************9999......677889**********988888889***************999*974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5193.46
//
Query:       CCD22817.1  [L=592]
Description: hypothetical protein NDAI_0A06630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-51  173.4   0.2    1.5e-50  172.1   0.0    1.8  2  Pkinase      Protein kinase domain
    1.6e-23   83.3   0.0    2.6e-23   82.6   0.0    1.4  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.018   14.7   3.4       0.23   11.0   0.0    3.2  4  FTA2         Kinetochore Sim4 complex subunit FTA2
       0.17   11.8   0.0        0.4   10.6   0.0    1.6  1  DUF2249      Uncharacterized conserved protein (DUF2249)
       0.21   11.5   0.0       0.39   10.6   0.0    1.3  1  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1   0.0   4.1e-54   1.5e-50       4     264 .]     269     532 ..     267     532 .. 0.87
   2 ?   -3.2   0.5       1.1   4.1e+03     211     238 ..     559     585 ..     543     590 .. 0.46

  Alignments for each domain:
  == domain 1  score: 172.1 bits;  conditional E-value: 4.1e-54
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                  +klGeG++G+V  ++  ++gk +AvK+++     ++ +  kk+++E  i  +l+h+ni++ ++ ++e +++++++ey++ + +++l+  +  +s +e+
  CCD22817.1 269 GKKLGEGATGSVSIVK-GSDGKVFAVKMFRLAAVGNSLTysKKITTEFCIGSTLHHENIIETFDLLKEGESFLVIMEYAPYD-FFNLVM-SDLMSTKEI 364
                 589*********9888.79************9999988888***************************************88.777775.579****** PP

                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHS CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltg 193
                 + ++kq+++g++ylHs+gi HrDlK +N  + +kg lK++DFG a  ++   +     ++ +vg+  YlAPE+l+ n+y  ++vDvWsl+++ y+++ +
  CCD22817.1 365 SCYFKQLCNGVHYLHSMGIAHRDLKLDNCVVTTKGILKLIDFGSAVIFQYPYEdriikAQGIVGSDPYLAPELLELNSYdPRPVDVWSLAIMYYCMILR 463
                 **************************************************9999***9*********************7789**************** PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS....-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilgetkeklpeasei....seeakdllkkllkkdpkkRltaeellqhpyl 264
                 + p+++ +++       + +  +++  ++++   + ++ +    +++a++l++++++ d kkR+ ++e++++++l
  CCD22817.1 464 RFPWKAPRKSF------NSFRLFCEDPDDEEDIAKGPKRLlqllPSKARNLINRMMELDYKKRILMDEVVKDEWL 532
                 *****433322......222122222222222222222225556*****************************97 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
                 HTHHHHHHHCTSHH...HHHTTS-HHHH CS
     Pkinase 211 dqlekilkilgetkeklpeaseiseeak 238
                 ++   i +i +e++ek ++++e  +e+k
  CCD22817.1 559 TE-DDIERITKEKEEKQKRKEESTKELK 585
                 22.3455555444444444444444433 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   7.3e-27   2.6e-23       4     200 ..     269     462 ..     267     529 .. 0.82

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 7.3e-27
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH...HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee...keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  gkklGeGa G+V   + +     +    avK+++  a  ++   ++++++e  i ++l+h+ni++   +  ++e+ l+++ey+++  ++  + +    
   CCD22817.1 269 GKKLGEGATGSVSIVKGS-----DGKVFAVKMFRLAAVGNSltySKKITTEFCIGSTLHHENIIETFDLLKEGESFLVIMEYAPYDFFNLVMSDL--- 358
                  689********9876666.....666789**997554444333499***************************************8888777776... PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET..TTSSEEEETTSSTSGGGGS-HHHHHHSEEEHH.HHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi..ekddeyvkkeeaklpvkWmapEslkekkftsk.sDvWsfGv 193
                   +++k++ ++  q+++G++yL+s+ + Hrdl   N++++++ + k+ DfG a       +d+  k+++   +  ++apE l+ +++  +  DvWs ++
   CCD22817.1 359 -MSTKEISCYFKQLCNGVHYLHSMGIAHRDLKLDNCVVTTKGILKLIDFGSAVIFqyPYEDRIIKAQGIVGSDPYLAPELLELNSYDPRpVDVWSLAI 455
                  .9************************************************87765313456668888889999************986538******* PP

                  HHHHHHT CS
  Pkinase_Tyr 194 llwEift 200
                  + + ++ 
   CCD22817.1 456 MYYCMIL 462
                  9997764 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.61   2.2e+03     143     163 ..     178     198 ..     142     232 .. 0.52
   2 ?    2.8   0.0     0.022        78      29      56 ..     271     299 ..     191     323 .. 0.86
   3 ?   11.0   0.0   6.5e-05      0.23     175     214 ..     365     409 ..     354     410 .. 0.81
   4 ?   -1.8   0.4      0.57     2e+03     151     199 ..     517     564 ..     497     586 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.61
        FTA2 143 rsralgeedgkkrpiraIVKe 163
                 +++  +++++++  ++ + K+
  CCD22817.1 178 SDSDSAKRKKNTLKLTRFFKK 198
                 333333444444444444444 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.022
        FTA2  29 yLgkglhsiVlkvk.irgkeYALKlFrfl 56 
                  Lg+g+++ V  vk  +gk++A+K+Fr  
  CCD22817.1 271 KLGEGATGSVSIVKgSDGKVFAVKMFRLA 299
                 6899999999999845789*******976 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 6.5e-05
        FTA2 175 vsqlpkllrdlkklhklgIvvrDlkeenyidg.....kLvDlsaa 214
                   ++++l + ++ lh+ gI +rDlk +n++       kL+D+++a
  CCD22817.1 365 SCYFKQLCNGVHYLHSMGIAHRDLKLDNCVVTtkgilKLIDFGSA 409
                 57899***********************98442335568888887 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.57
        FTA2 151 dgkkrpiraIVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlk 199
                 ++k+  +  +VK+ e l++ ++++v++ ++l+++ k+ + + +   D++
  CCD22817.1 517 YKKRILMDEVVKD-EWLESINQCRVDKGNNLVEKPKQHKHHLVTEDDIE 564
                 4555555567888.77888888888888888888887777777777776 PP

>> DUF2249  Uncharacterized conserved protein (DUF2249)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00011       0.4      12      37 ..     322     347 ..     318     354 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
     DUF2249  12 rhaaIfeafeaLapGetlelvndhdP 37 
                 +h++I e+f+ L++Ge+++++    P
  CCD22817.1 322 HHENIIETFDLLKEGESFLVIMEYAP 347
                 7******************9987666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00011      0.39     165     197 ..     380     410 ..     367     416 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 ++++ H+Dl+++N +v+ ++g +  +iDf+ a+
  CCD22817.1 380 SMGIAHRDLKLDNCVVT-TKGIL-KLIDFGSAV 410
                 57899************.55554.8****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1967  (0.109711); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 4175.08
//
Query:       CCD22818.1  [L=391]
Description: hypothetical protein NDAI_0A06640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-53  179.5   0.1    6.8e-53  178.8   0.1    1.3  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
    6.8e-42  143.1   0.3    1.4e-41  142.1   0.0    1.7  2  NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogen
  ------ inclusion threshold ------
      0.035   14.7   0.0         11    6.7   0.0    2.6  2  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent


Domain annotation for each model (and alignments):
>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.8   0.1   1.1e-56   6.8e-53       1     152 [.      35     200 ..      35     204 .. 0.97

  Alignments for each domain:
  == domain 1  score: 178.8 bits;  conditional E-value: 1.1e-56
                     -EEEE--SHHHHHHHHHHHTTT........--EEEE-S-H.....HHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHH CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaeng........hevrlwvree.....elieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqal 82 
                     k++v+G+G+wGt++Akv+aen+        +ev +wv+ee     +l+e in++h+nvkyLpgi+lp+nl a++dl +a++gadi+v+++P+q+l
      CCD22818.1  35 KVTVIGSGNWGTTIAKVVAENTaqnptlfaPEVNMWVFEEkiegkNLTEIINTKHQNVKYLPGITLPDNLIANPDLLSACEGADILVFNIPHQFL 129
                     79******************************************9************************************************** PP

                     HHHHHHHCCC--TT-EEEE---SE..ET.TTEEHHHHHHHHH-S--EEEEESS--HHHHHTT--EEEEEEES CS
  NAD_Gly3P_dh_N  83 revlkklkgllkkkailvsliKGi..eegtlkllsevieeelkeekvavlsGpslAeEvakgkptavviask 152
                     r+++ +lkg+++kk++++s++KG+   +++++lls++i++el+++ ++ lsG++lA Evak++++++++a++
      CCD22818.1 130 RRIVSTLKGHVDKKVRAISCLKGFevDANGVQLLSSYITDELNIA-CGALSGANLAPEVAKENWSETTVAYH 200
                     ************************766799***************.***********************986 PP

>> NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.3   7.7e+03       3      27 ..     158     183 ..     156     189 .. 0.66
   2 !  142.1   0.0   2.3e-45   1.4e-41       1     140 [.     233     378 ..     233     380 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
                     HHHHHHH.HHHHHHHHHHHHHHHTTH CS
  NAD_Gly3P_dh_C   3 iGvelag.alKNviAiaaGivdglgl 27 
                      Gv+l +  + + + ia+G ++g +l
      CCD22818.1 158 NGVQLLSsYITDELNIACGALSGANL 183
                     56665441356667899999999876 PP

  == domain 2  score: 142.1 bits;  conditional E-value: 2.3e-45
                     -HHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHTSS..GGGGG.STTTHHHHHHHHHSCT.HHHHHHHHHHC.T--HH CS
  NAD_Gly3P_dh_C   1 DviGvelagalKNviAiaaGivdglglgdntkaalitrglaEmarlakalgak..petfl.glaglgDlivtctsgksRNrrfGeelgk.gesle 91 
                     Dv+G+++agalKNv+A+++G+v+glg+g+n+ aa+ + gl E++++++++  +   et++ ++ag++Dli+tc++g  RN+++G++++k g+++ 
      CCD22818.1 233 DVAGISIAGALKNVVALGCGFVEGLGWGNNASAAIQRVGLGEIIKFGQMFFPEsrVETYYqESAGVADLITTCSGG--RNVKVGKHMAKtGKDAF 325
                     9************************************************944455779999***************..***********988888 PP

                     HHHH.HHC.C--HHHHHHHHHHHHHHHTT...G.HHHHHHHHHHHS---HHHH CS
  NAD_Gly3P_dh_C  92 eiek.eln.qvleGvetakevyellkkkgv..emplleavykilyegkspeel 140
                     e+e+  ln q ++G+ t+kev+e+l++ ++  e+pl++avy+i+y+++++e++
      CCD22818.1 326 EAEAeLLNgQSAQGIITCKEVHEWLESCDLvsEFPLFDAVYQIVYNNVPMENI 378
                     888878888******************98889****************99876 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0019        11       1      22 [.      35      56 ..      35      67 .. 0.84
   2 ?    5.3   0.0    0.0049        29      54      95 ..     109     150 ..      76     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0019
                   EEEEETTSHHHHHHHHHHHHTT CS
  F420_oxidored  1 kigiiGaGnmgealasgllaag 22
                   k+ +iG+Gn g ++a+ ++++ 
     CCD22818.1 35 KVTVIGSGNWGTTIAKVVAENT 56
                   689************9877765 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0049
                    CHHHHHHH-SEEEE-S-HHHHHHHHHHCGHHHHTTSEEEEES CS
  F420_oxidored  54 dneeaaeeadvvvlavkpedveevlselakdalkgklvisvl 95 
                    d   a+e ad++v+ ++ + +  ++s l+ + +k+   is+l
     CCD22818.1 109 DLLSACEGADILVFNIPHQFLRRIVSTLKGHVDKKVRAISCL 150
                    66789***********************88888887778876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2961.52
//
Query:       CCD22819.1  [L=729]
Description: hypothetical protein NDAI_0A06650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-11   42.7   0.4    6.4e-10   39.2   0.0    2.9  3  FCH       Fes/CIP4, and EFC/F-BAR homology domain
    6.4e-11   42.2   0.0    1.7e-10   40.8   0.0    1.8  1  DEP       Domain found in Dishevelled, Egl-10, and Pleckstrin
    3.3e-08   33.5   1.2    3.5e-06   26.9   0.0    3.0  2  RhoGAP    RhoGAP domain
  ------ inclusion threshold ------
        0.1   12.4   0.7        0.3   10.8   0.7    1.8  1  YihI      Der GTPase activator (YihI)


Domain annotation for each model (and alignments):
>> FCH  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.4e-13   6.4e-10       1      77 []      16      91 ..      16      91 .. 0.95
   2 ?   -0.3   0.1      0.29   1.3e+03      31      47 ..     133     149 ..     132     212 .. 0.57
   3 ?   -3.2   0.0       2.4   1.1e+04      31      48 ..     286     303 ..     286     331 .. 0.73

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1.4e-13
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----TT.-.....HHHHHHHHHHHHHHHHHHHHHHH CS
         FCH  1 gfkvlqkrleqgialledlqeflkeRaeiEkeYakkLqkLakkylkrr.kkkseestlvtawtvlleeteklaqshla 77
                g+++l++rl  g+++ + +++++  R++iE  Y+++L  + k +++++  +  ++st+ +a++++++ +e+++++hl+
  CCD22819.1 16 GLQALFDRLAVGCDSSDHFIQLFASRMQIEVLYGRQLYDVQKGIDNTDyGE--DYSTTDEALRKIITGMEQEGDQHLN 91
                7899******************************************98665..8**********************85 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.29
                 HHHHHHHHHHCT----T CS
         FCH  31 keYakkLqkLakkylkr 47 
                 k Y +kL+k+  + +k+
  CCD22819.1 133 KKYVQKLEKVYYNSCKN 149
                 56888888876555553 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.4
                 HHHHHHHHHHCT----TT CS
         FCH  31 keYakkLqkLakkylkrr 48 
                 k+Ya k   L+++ ++++
  CCD22819.1 286 KDYAYKFADLSEQNKNNG 303
                 678888888888877754 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   3.9e-14   1.7e-10      13      72 .]     226     285 ..     212     285 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 3.9e-14
                 EESSE-HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTSCECSSSSHCC--SSSSS-EEE CS
         DEP  13 typncftGseavdWLldnldiedreeAvalgqlLldqgliehvedkhqeFrdskqafYqf 72 
                 t  n+ +G+e++ +Ll++l+++d ++A+ +gq+Ll+ g+i+ +++ +++F +sk+++Yq+
  CCD22819.1 226 TLTNTNSGKEITNFLLKHLSLKDLDQAEIFGQELLNIGFIKYCNGVGTTFVNSKKFVYQW 285
                 6789*******************************************************8 PP

>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.5     0.011        49      13      70 ..     155     216 ..     133     253 .. 0.83
   2 !   26.9   0.0   7.8e-10   3.5e-06      31     122 ..     528     666 ..     521     669 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.011
                 HHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCT....TTTTSCHHHHHHHHHHHHHHSSST CS
      RhoGAP  13 krgldtegiyRvsgskarvkelreafdkgkavds....dleeedvhavaslLKrfLrelpep 70 
                 +   + e + +  g+ +  kel++ ++++k+ ++    d+  +d+ +  +++K+ L +lp++
  CCD22819.1 155 RTNFNDEELSKALGHLTLQKELEASLHNEKEHQNfatiDSITFDYKTMREVIKEILVKLPKS 216
                 45567788888889999999999999999999999999999999999999999999999975 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 7.8e-10
                 HHHHHHHHHHTGGGCT.......TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTS........SSHHHH...................... CS
      RhoGAP  31 vkelreafdkgkavds.......dleeedvhavaslLKrfLrelpepLltkelyeelieaaks........edeeer...................... 92 
                 +++lr  +++++ +d+       +  +++  ++as+LK +L elpepL++ + ++ l  ++++        ++   r                      
  CCD22819.1 528 THKLRRLLNEKQFKDEyeiielfNNGSFEAGTIASALKIYLLELPEPLISSDSLDVLKLLYSKfstsslpgDN---Rekaisnstnadgasnmsssage 623
                 567777777777777777788999999999**********************999999766666667766522...13357788888899999999999 PP

                 .............HHHHHHHHTTS-HHHHHHHHHHHHHHHHHH CS
      RhoGAP  93 .............lealkellekLPkenrdtLryLlehLkrva 122
                              + al+ +l++L k+  +tL ++ +h++r++
  CCD22819.1 624 ensqmdvgieskrIMALSTTLSSLGKPYLATLDAITRHFYRLI 666
                 9999999999999**************************9986 PP

>> YihI  Der GTPase activator (YihI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.7   6.8e-05       0.3      64     135 ..     321     390 ..     297     405 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.8e-05
        YihI  64 vveekvkaekkkkkkaekekekklspeqeLakLEnderLnaLLdrLeegekLskedqkyvdekLdrideLme 135
                 +v+++ +++++   +++  +e+++  +++L   E++++L +LLd++e+  k+ +e+   +d+    i+eLm 
  CCD22819.1 321 TVSSSPSNTST--VTKSGPAEANFPLNEKLDISEDEKKLFKLLDEVEKSDKIYHEESFKMDSLRCSIEELMI 390
                 34433333333..333335667899999****************************9999999999999994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5075.61
//
Query:       CCD22820.1  [L=593]
Description: hypothetical protein NDAI_0A06660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.8e-34  117.2   0.3    6.8e-34  117.2   0.3    1.8  2  CRC_subunit  Chromatin remodelling complex Rsc7/Swp82 subunit


Domain annotation for each model (and alignments):
>> CRC_subunit  Chromatin remodelling complex Rsc7/Swp82 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.74   1.3e+04      50      73 ..      24      46 ..      21      57 .. 0.54
   2 !  117.2   0.3   3.8e-38   6.8e-34       2     135 .]     103     237 ..     102     237 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.74
  CRC_subunit 50 tdlarllgfrdsylffkknpqllk 73
                 ++la++++f+++  + ++ ++llk
   CCD22820.1 24 EHLAKIISFTNEKQLCHN-KTLLK 46
                 566777777766444443.33333 PP

  == domain 2  score: 117.2 bits;  conditional E-value: 3.8e-38
  CRC_subunit   2 ddeykltkedpegekkidknGkLlggre.yrvktFtleer..egkklyvLstdlarllgfr.dsylffkknpqllkllatqeekedLiergllpsslk 95 
                  + +y+++++d++ge+ki++nG L+g+++ +++++Ft++++  ++++++vL++dl+++l ++  +  f++++++ll+l+at ee ++L+++ l +++  
   CCD22820.1 103 NCSYVMSMKDEKGEEKINANGLLTGNKKcFLFDIFTFNKEnsDTQQYFVLVNDLIKALLYTgTEEEFLSDYKNLLPLVATGEELDFLRDHALANNENL 200
                  789**********************9988*******9965468999**************996778************************99888877 PP

  CRC_subunit  96 srqiklvtarsvFlefGariivkGkrvvDDYyeekakeqg 135
                      ++vt++s+F++fGa+++++G r++DDY+e+ a +q+
   CCD22820.1 201 C---RYVTTKSAFVQFGAQVVTSGFRIIDDYWEDIALKQN 237
                  7...6*****************************999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4515.34
//
Query:       CCD22821.1  [L=575]
Description: hypothetical protein NDAI_0A06670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-61  208.2   0.1      2e-61  207.8   0.1    1.2  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
      3e-07   30.2   0.2    0.00016   21.3   0.0    2.4  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)
      1e-05   25.4   0.0    2.1e-05   24.4   0.0    1.5  1  tRNA_anti-codon  OB-fold nucleic acid binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.8   0.1   3.4e-65     2e-61       8     312 ..     224     568 ..     217     570 .. 0.85

  Alignments for each domain:
  == domain 1  score: 207.8 bits;  conditional E-value: 3.4e-65
                  THHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE.-E-S-SHHHHHHHHHCTHSEEEEEEEEE--S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   8 nryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeff.aLtqspqlylellivagidrvfqiaraFRaE 104
                  nr++d++ + + ++l +r+ ++k++r ++ee+ f+e+etPiLs+++ ++ a++Fk++    ++e    L+++p+l+l++li++g++++++i+++FR+E
   CCD22821.1 224 NRIVDYQVNGI-ETLLIRNYIIKLIRLFFEEQSFVEVETPILSSKTNGATAKPFKTTILDSKGETTlELRIAPELWLKRLIISGFEKIYEIGKVFRNE 320
                  55555554444.57889***************************************887777755558****************************** PP

                  --BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS.......EE-SSS-EEEEHHHHHHHHHTS............ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxx............ RF
  tRNA-synt_2 105 dsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrns.......kdlkkpfkrltykeaieklnei............ 183
                  ++++++++ EFt +e++  f++ +d+++  e+l+k+++ ++ ++   + ++  ++n+       ++ + +f+r+++  ++++  +             
   CCD22821.1 321 SVDATHNP-EFTILEFYETFLSLDDLISKGEQLLKYILLNL-KNRFPNSKTLLNSNFnglfetlEKTNWKFRRFDFLSTLSNELNVdfallnlnnpdp 416
                  ********.********************************.5555666667777777999998777888**********994444677666555555 PP

                  .............-SS--HHHHHHHHH...........................HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEE CS
                  .............xxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 .............gkdldkaderalvk...........................keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElv 241
                                                                         ++ +p++++++P  ++p+++ ++++ ++++++++l+++g El+
   CCD22821.1 417 tdiikvlptfakdF------------LsinapistlstqqivnklcseflegkyCNSIHPTLIMHHPTIISPLAKTNTHN-SQVSNRFELFVKGKELM 501
                  55555555555550............055555555555566666666777777667899****************99999.9**************** PP

                  EEEEB--SHHHHHHHHHHCCHHSSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-X CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 242 gGslRiedpeeleeklkskgldeeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPk 312
                  +++ +++ p+ +e++++ ++ +    + + ++++ l+yG+pp gGlg+G+dRl+mll++++ I dv++F  
   CCD22821.1 502 NAYEEENCPQYQENNFRLQNSS----TLDFHFINSLRYGMPPVGGLGMGIDRLCMLLMNKQRIEDVLPFGT 568
                  ********************99....9999**************************************975 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.6e-08   0.00016     103     160 ..     309     363 ..     306     369 .. 0.81
   2 !    6.4   0.1   0.00091       5.5     210     231 ..     539     560 ..     532     568 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.6e-08
                   EEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHHCTSTEEEE CS
  tRNA-synt_2d 103 kiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleellkklfgaevkvr 160
                   ki  ig+vfR+++vDath +eF+ +e+   ++ +sl+dl+   e+llk++   ++k r
    CCD22821.1 309 KIYEIGKVFRNESVDATHNPEFTILEFY--ETFLSLDDLISKGEQLLKYI-LLNLKNR 363
                   67889********************975..67789999998888888887.3444555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00091
                   EEEEEEEEHHHHHHHHHT-SSG CS
  tRNA-synt_2d 210 sgfafGlGveRlamlkygieDi 231
                   ++ ++G+G++Rl ml ++ + i
    CCD22821.1 539 PVGGLGMGIDRLCMLLMNKQRI 560
                   57789**********9986655 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   3.5e-09   2.1e-05       1      68 [.     109     195 ..     109     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 3.5e-09
                      EEEEEEEEEEEEEEETTEEEEEEEETT..EEEEEEEET................HHHHHHHTTS-TTSEEEEEEEEEECTTS..SEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgt..griqvvlfr................eeatklaenlkeGdvvrvtGrvkrrpgg..elel 68 
                      +t+ G++++i+  sg+k++fidl   +   ++q++l+                 +e+    + lk+Gd+++v G+++r++ +   l+l
       CCD22821.1 109 YTLNGKIKNIR-YSGKKICFIDLLHSSsnSQLQIILNFnrlsqenggssssipqGEFVTSTQFLKKGDYIKVQGYPGRSESRagTLSL 195
                      6899******9.***************8889999999999**************99999999****************9666444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 4015.87
//
Query:       CCD22822.1  [L=413]
Description: hypothetical protein NDAI_0A06680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.9e-110  368.4   0.0   3.4e-110  368.2   0.0    1.0  1  tRNA_Me_trans  tRNA methyl transferase
    0.00016   20.9   0.0     0.0012   18.0   0.0    2.1  2  NAD_synthase   NAD synthase


Domain annotation for each model (and alignments):
>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.2   0.0  3.8e-114  3.4e-110       2     356 .]      28     412 ..      27     412 .. 0.89

  Alignments for each domain:
  == domain 1  score: 368.2 bits;  conditional E-value: 3.8e-114
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeqgye..vigvflklweeedeeg...keccaeedlkdaervaeklgiplevvdfekeykekvfeefleeyeeGrTP 92 
                    ++v+a+S+GVDSsvaa+l+ e + +  ++g+++ +w+++++e+   k+ c+e+d+kd+ ++ + l+ip++ ++fek+y+ +vfe++l+ y++G TP
     CCD22822.1  28 TIVIAMSSGVDSSVAALLFSELFPNckIKGIYMSNWSQQENEEtheKGQCYERDWKDVCQIGKYLNIPVDFINFEKDYWMDVFEPMLHGYQKGITP 123
                    79*******************99762268********95544445699************************************************ PP

  tRNA_Me_trans  93 nPdvlCNkeiKfgallekake..elgadalatGHYarvsleeeknevellrakdkkkDQsyfLsqlskealekllfPlgeltKeevrkiAkeagla 186
                    nPd+ CNk iKfg+l++++++   ++++ l+tGHYar+ ++ ++++++llr+ +k+kDQsy++sq+s ++l ++++P+g++tK+evr+iA+ ++l+
     CCD22822.1 124 NPDIGCNKFIKFGKLFRHLNSqyGKDNYRLVTGHYARILQK-NNGDFNLLRSYYKNKDQSYYMSQISPSTLPNIILPIGHMTKPEVREIANFYKLP 218
                    *******************9944456778**********99.58**************************************************** PP

  tRNA_Me_trans 187 vaekkdSqgiCfigkrk...fkdflkkyleekeGkiieiet....gevlGeheGllsyTiGqrkGlkiag....aeeplyVvekdakkntvlvgkg 271
                    +a+k+dSqgiCf+++++   fk+fl++y++e++G+ii+i +    ++ +Geh+Gl+syT+Gq+ Gl++++    +++++yV +k  ++n++++++g
     CCD22822.1 219 TANKPDSQGICFVNNSQhgsFKNFLQNYIPENKGDIITILEdgkkKRKWGEHTGLWSYTVGQKIGLSMPQgdhrFSGAWYVSDKLKSTNELVIVRG 314
                    **************999899*****************98554555899**********************9999999******************* PP

  tRNA_Me_trans 272 edeealaskklrvkelnwlae........elkekealelevkvrhkqelvkak.velked....etvevkldekvravtpGQaavlYkgdevLGgg 354
                    +d++al++++++v+++ ++           ++  ++  l++++r+ qe+v++k ++  +d     + e+ ++ ++ra++pGQ+++lY gd+v+G+g
     CCD22822.1 315 RDNPALYKNTVKVRDFCYMGAdieqmkkdVVAAIKSGMLTMQYRSLQEPVRVKhLSYLKDgddsTVQELGMEVAQRAMAPGQYCCLYIGDTVIGSG 410
                    *******************99775444332222244567899999998888762333333212223457799************************ PP

  tRNA_Me_trans 355 ii 356
                    +i
     CCD22822.1 411 TI 412
                    98 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.4e-07    0.0012      19      62 ..      27      72 ..      18     100 .. 0.83
   2 ?    0.0   0.0     0.042   3.8e+02     148     170 ..     197     219 ..     195     226 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-07
                  SEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--..SSSTTHHHH CS
  NAD_synthase 19 kgvvlGlSGGvDSslvaalavkalgkenvlalllP..ssvsseedv 62
                  + +v+ +S GvDSs++a l  +++ + +++++++   s++++ee +
    CCD22822.1 27 DTIVIAMSSGVDSSVAALLFSELFPNCKIKGIYMSnwSQQENEETH 72
                  5799******************************843333333333 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.042
                   BETTTTS-HHHHHHHHHHTT--H CS
  NAD_synthase 148 lapiaellKtevkeLakelnvPe 170
                   ++pi++++K ev+e+a+    P 
    CCD22822.1 197 ILPIGHMTKPEVREIANFYKLPT 219
                   78*************99888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3134.82
//
Query:       CCD22823.1  [L=796]
Description: hypothetical protein NDAI_0A06690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-79  264.1  11.2    1.6e-78  263.2  11.2    1.5  1  Git3        G protein-coupled glucose receptor regulating Gpa
    7.4e-27   93.2   1.3    7.4e-27   93.2   1.3    2.2  2  GPR_Gpa2_C  G protein-coupled glucose receptor regulating Gpa
     0.0068   15.8   0.0      0.022   14.1   0.0    1.8  2  7tm_1       7 transmembrane receptor (rhodopsin family)
  ------ inclusion threshold ------
       0.02   13.8   2.4      0.036   12.9   1.4    1.8  2  MscS_TM     Mechanosensitive ion channel inner membrane domai
       0.29   11.4   7.7      0.037   14.3   1.6    2.6  3  Ost5        Oligosaccharyltransferase subunit 5


Domain annotation for each model (and alignments):
>> Git3  G protein-coupled glucose receptor regulating Gpa2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.2  11.2   4.3e-82   1.6e-78       2     201 ..      44     270 ..      43     271 .. 0.99

  Alignments for each domain:
  == domain 1  score: 263.2 bits;  conditional E-value: 4.3e-82
        Git3   2 lklrilaitassvsilaglvalylllaidkrrrvfRheLillLilvdllkalvlliypvkvlvenkvyassafcqvvGfflavaiegsdlailllavht 100
                 +klri++i++s+ si+ag++++++l+ id+rr++fRh+LillL+++d++k +v+liypv ++++++vy  ++f++++G+f+a++ieg+dl+i ++a+h+
  CCD22823.1  44 RKLRIITIVSSCASIVAGFLGIFFLTGIDRRRHIFRHDLILLLLVYDMMKGIVFLIYPVATIIHKHVYGIPKFYNTLGWFTAFTIEGADLVIGIFAIHF 142
                 689************************************************************************************************ PP

        Git3 101 allvfkpnl..rnkksknvegGLykyrkyvyvisvlvplllasLafin.........................akregYkplsawcylpeepvwyrlvl 172
                 all+fkp++  rn+k++n+egGLyk+r+++++i +lvp llasLafin                         a+ +gYkp++ wcylp++p+wyr++l
  CCD22823.1 143 ALLIFKPSWkwRNRKTGNMEGGLYKVRYFMFPILFLVPALLASLAFINfnkkpkinyninivldnndisivskARVGGYKPWGSWCYLPPKPIWYRIAL 241
                 *******99999************************************************************99************************* PP

        Git3 173 swiprYiivvaivaiyisiyiyvrreikk 201
                 sw+prY+++++iv+iy+siy+yvrre++k
  CCD22823.1 242 SWGPRYLLIISIVIIYVSIYVYVRRESEK 270
                 **************************987 PP

>> GPR_Gpa2_C  G protein-coupled glucose receptor regulating Gpa2 C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       2.2   7.9e+03      14      22 ..      97     105 ..      93     106 .. 0.80
   2 !   93.2   1.3   2.1e-30   7.4e-27       1      76 []     473     548 ..     473     548 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.2
  GPR_Gpa2_C  14 ifiYPlaYi 22 
                  +iYP+a i
  CCD22823.1  97 FLIYPVATI 105
                 479***977 PP

  == domain 2  score: 93.2 bits;  conditional E-value: 2.1e-30
  GPR_Gpa2_C   1 kkrrkqierqlrsifiYPlaYiilwlfPfvahvlqydyelkekpviwllvvaavvqplnglVDtlvfllrerpwry 76 
                 k+rr+qi+r+lr+ifiYP++Y+++w fP+++++ qy++e++ +p+ wl+++  +++p ++l+++ vf+ re+pwry
  CCD22823.1 473 KHRRSQIQRNLRTIFIYPISYVLIWFFPLLLDAFQYSHEEEYGPILWLAYIENFIRPASCLINSSVFVSREKPWRY 548
                 579************************************************************************8 PP

>> 7tm_1  7 transmembrane receptor (rhodopsin family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.6   5.6e+03      29      45 ..     131     147 ..     130     156 .. 0.76
   2 !   14.1   0.0   6.2e-06     0.022     136     230 ..     227     506 ..     214     535 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.6
                 HHHHHHHHCHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       7tm_1  29 aDlllgllvlpfaivye 45 
                 aDl++g++ + fa+++ 
  CCD22823.1 131 ADLVIGIFAIHFALLIF 147
                 89*****9999999754 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 6.2e-06
                 EEECSSSTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHSHCCH...........HHHHHC............................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxx............................. RF
       7tm_1 136 dCqittleesvyiifsavlsfilPllvivilyarifrtvlktsrtktskskng...........gsstpp............................. 194
                  C++  ++   y i  +    +l ++ ivi+y+ i+  v+++s++ +++ ++            +    +                             
  CCD22823.1 227 WCYLPPKP-IWYRIALSWGPRYLLIISIVIIYVSIYVYVRRESEKIKTQLSEFenptnikhnsfK----Krqdsvtqwpqvnilrpviqfaygtkhffa 320
                 56666666.889999999999999*********************99955444666666665540....044566666788888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       7tm_1 195 ................................................................................................... 194
                                                                                                                    
  CCD22823.1 321 lsvedphnkdqpvsfthsvtqrneksddesmvfspqqgglhilryhhtnghivngtstassadyivpesrtnidinlsshayateidhdrdeipssyns 419
                 88888888999999999999999999999********************************************************************99 PP

                 ....................................................TTCHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 ....................................................xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       7tm_1 195 ....................................................lkavre..kkaartlgivvavfivcwlPftiiyllqal 230
                                                                     lk +r+  ++ +rt++i  +++++ w+   +  ll+a+
  CCD22823.1 420 etnsnsifneniernrndenpnhlipkssqlgndidelaqvrqnfqretyadLKHRRSqiQRNLRTIFIYPISYVLIWF---FPLLLDAF 506
                 999999999999999999999999999999999999998888888887777655555588**********999999995...33334444 PP

>> MscS_TM  Mechanosensitive ion channel inner membrane domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.4     1e-05     0.036     124     215 ..      90     188 ..      74     189 .. 0.82
   2 ?   -1.8   0.0      0.31   1.1e+03     288     332 ..     462     508 ..     446     510 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1e-05
     MscS_TM 124 ralkrlilvllplllvlilaealsdalardvlG.......rlaflllllllavflarllrpalglyankkeeeknsl.rlrrllylllvlaPlalavla 214
                  ++k +++++ p++  +i  + +    ++++lG         a l++ ++ + f+  +++p+++  ++k+++ + +l  +r++++++l+l+P +la la
  CCD22823.1  90 DMMKGIVFLIYPVAT-IIHKHVYGIPKFYNTLGwftaftiEGADLVIGIFAIHFALLIFKPSWKWRNRKTGNMEGGLyKVRYFMFPILFLVPALLASLA 187
                 555666666666554.4445577888888888888888777788899999999*******************************************998 PP

     MscS_TM 215 a 215
                 +
  CCD22823.1 188 F 188
                 6 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.31
     MscS_TM 288 e..veepeldleaisaQslrLlrlllllallvglylvWsdllpalsf 332
                 +  + e+  dl+   +Q+ r lr++ +  +  +l++    ll a+++
  CCD22823.1 462 QnfQRETYADLKHRRSQIQRNLRTIFIYPISYVLIWFFPLLLDAFQY 508
                 24578888999999999999999999999999999988888888876 PP

>> Ost5  Oligosaccharyltransferase subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.6     1e-05     0.037      17      65 ..      22      68 ..      12      70 .. 0.84
   2 ?   -4.0   0.1         5   1.8e+04      18      36 ..      85     103 ..      84     108 .. 0.69
   3 ?   -1.3   0.0      0.77   2.7e+03      18      58 ..     176     188 ..     167     202 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-05
        Ost5 17 fvllligllltalfflyevtstkkkrslvkelllalvASlflGf.Gvvfl 65
                ++ l i+l l ++f +y   s  ++r+l   ++++ +AS+ +Gf G++fl
  CCD22823.1 22 TTSLNIALGLPGMFSTY---SDSQTRKLRIITIVSSCASIVAGFlGIFFL 68
                67899*********999...6666799****************6488887 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5
        Ost5  18 vllligllltalfflyevt 36 
                 +ll++ ++   +f++y v 
  CCD22823.1  85 LLLVYDMMKGIVFLIYPVA 103
                 5777777777777777665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.77
        Ost5  18 vllligllltalfflyevtstkkkrslvkelllalvASlfl 58 
                 ++                            l+ al+ASl++
  CCD22823.1 176 LF----------------------------LVPALLASLAF 188
                 33............................33344444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 5342.75
//
Query:       CCD22824.1  [L=176]
Description: hypothetical protein NDAI_0A06700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-27   95.2   0.1    4.8e-27   95.0   0.1    1.1  1  E1_DerP2_DerF2  ML domain


Domain annotation for each model (and alignments):
>> E1_DerP2_DerF2  ML domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.1   2.7e-31   4.8e-27       4     132 ..      44     168 ..      41     170 .. 0.94

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 2.7e-31
                     EEESSTTTSSEEEEEEEEEESSECEECTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEE-BSSEETCHHHHHH..TTTT-SSSB-TCEEEEE CS
  E1_DerP2_DerF2   4 fedCgankddavtvksveisppcplkrgqnltisadgstsdeissglkaevevkvggwikvpfelpetddaCkvle..lgegleCPikageyvty 96 
                     + +C+ ++ ++++++++++sp+ p++r ++l isa+g++  +i++g++++vev++g +ik++ +   t d+C++le    ++l+CPikag y ++
      CCD22824.1  44 LLQCDISERQILNIDQIDLSPN-PPARDSKLEISASGQIFGTIEKGAYVDVEVRLG-YIKLLTQ---TFDLCETLEenDVDELTCPIKAGSY-VL 132
                     569*9999************99.*********************************.5******...99*****999966789*********.99 PP

                     EEEEES-CCCHSCEEEEEEEEEECTTEEEEEEEEEE CS
  E1_DerP2_DerF2  97 tlslplpselpngkyrvelelldedgkeltCvkidv 132
                     ++s+++p+e+p+gky v +++++ d++ +tC++ +v
      CCD22824.1 133 SKSVDIPAEVPPGKYIVVARAYTVDDDLITCITGEV 168
                     ********************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       288  (0.0160634); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1259.39
//
Query:       CCD22825.1  [L=95]
Description: hypothetical protein NDAI_0A06710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00011   22.3   0.2    0.00015   21.8   0.2    1.2  1  CHCH      CHCH domain
     0.0049   16.9   0.9     0.0058   16.6   0.9    1.1  1  Cmc1      Cytochrome c oxidase biogenesis protein Cmc1 like
  ------ inclusion threshold ------
      0.089   11.0   0.0        0.1   10.8   0.0    1.0  1  Cast      RIM-binding protein of the cytomatrix active zone


Domain annotation for each model (and alignments):
>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.2   2.4e-08   0.00015       1      34 [.      30      63 ..      30      64 .. 0.97

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.4e-08
                THHHHHHHHHHHHHCTSSTTTTHHHHHHHHHHHC CS
        CHCH  1 CgeefkeylkClkdnsdefskCrkefeafkeCvk 34
                C+  ++++l+C+ +n++ +  C  + +++k+C k
  CCD22825.1 30 CLVLMSNLLQCWSSNGHMSPTCEALATELKACTK 63
                99******************************75 PP

>> Cmc1  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.9   9.7e-07    0.0058       7      58 ..      24      73 ..      18      84 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.7e-07
        Cmc1  7 kkarkeCaelikalaeChkdrllkvvgkCneekeamkkClkeyrtderlkda 58
                ++  ++C  l+  l +C + +   + ++C+ + +++k+C k     ++  ++
  CCD22825.1 24 RQETNRCLVLMSNLLQCWS-SNGHMSPTCEALATELKACTKVNAMGKSQ-KE 73
                566799*************.8889***************9987776666.33 PP

>> Cast  RIM-binding protein of the cytomatrix active zone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.7e-05       0.1      39     104 ..      14      79 ..      13      90 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.7e-05
        Cast  39 PelkkeralRkeeaarisvlkeqyrvtqeenqhlqltvqalqdelraqrdlnqllqqerqesnssg 104
                 P l+  + + ++e++r  vl  ++      n h+  t +al  el+a  ++n + ++++++ ++ +
  CCD22825.1  14 PRLRVKKPVIRQETNRCLVLMSNLLQCWSSNGHMSPTCEALATELKACTKVNAMGKSQKEQKSNIN 79 
                 667778889999****************************************99988866554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 725.83
//
Query:       CCD22826.1  [L=314]
Description: hypothetical protein NDAI_0A06720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-35  122.7   0.0    2.1e-35  122.3   0.0    1.2  1  PAPS_reduct  Phosphoadenosine phosphosulfate reductase family


Domain annotation for each model (and alignments):
>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.0   1.2e-39   2.1e-35       2     172 ..      56     230 ..      55     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 1.2e-39
                  EEEE--SSCTCHHHHHHHHHHCTTH......................EEEEEE-STB-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHHHHH-S-TH CS
  PAPS_reduct   2 lvvsvsgGkdslVllhLalkafkpv......................pvvfvdtghefpetiefvdeleeryglrlkvyepeeevaekinaekhgssl 77 
                  + +s++gGkd++Vll L+l++++++                      p+vf+d+ ++f ++ +f+ e+++ry  +l++ye+++ev ++  +++     
   CCD22826.1  56 ISFSYNGGKDCQVLLLLYLSCLWEFfivnakrsqfeakyqkfpmeqlPTVFIDQDETFTTLENFILETSKRY--NLSLYESKKEVGRNQSMAD----- 146
                  789*********************8899********************************************..888****************..... PP

                  HHCHHHHHHTHHHHHHHHHCTTECEEE----CCCTTTTTTSSSEEECTTT-SCEEE-CCCT--HHHHHHHHHHCT--B-CCCCTT-SS--BCTTB CS
  PAPS_reduct  78 yeeaaeriaKveplkkaLekldedalltGaRrdesksraklpiveidedfekslrvfPllnWteedvwqyilrenipynpLydqgfrsiGcvpct 172
                     a++++ K++p +k        a+ +G+R +++  +  +pi+++d++++++ r++Pll+W+  ++w+++l +n p++ Ly  gf+siG++++t
   CCD22826.1 147 ---AFRDFLKIYPETK--------AIAIGVRSTDPYGELLKPIQKTDSNWPNFTRLQPLLHWKLANIWSFLLFSNEPICALYVHGFTSIGGIKNT 230
                  ...7888*********........9*******************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2274.37
//
Query:       CCD22827.1  [L=445]
Description: hypothetical protein NDAI_0A06730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.072   13.4   0.1       0.24   11.7   0.1    1.9  1  Chromo_2     Chromatin organization modifier domain 2


Domain annotation for each model (and alignments):
>> Chromo_2  Chromatin organization modifier domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.3e-05      0.24      41      66 ..      45      70 ..      28      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.3e-05
    Chromo_2 41 eleelltTiEpqelvqkaYPelveaF 66
                e+e+ l++iE+++l+q+  +e+ e+F
  CCD22827.1 45 ENEQPLSSIEEENLFQNVLSEIQEKF 70
                556679******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       909  (0.0507); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3420.04
//
Query:       CCD22828.1  [L=249]
Description: hypothetical protein NDAI_0A06740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-18   66.8   0.1    3.4e-18   65.8   0.1    1.5  1  SF3A2        Pre-mRNA-splicing factor SF3a complex subunit 2 
    1.7e-06   28.2   2.1    4.1e-06   27.0   2.1    1.7  1  zf-met       Zinc-finger of C2H2 type
     0.0042   17.5   0.3       0.01   16.3   0.0    1.8  2  OrsD         Orsellinic acid/F9775 biosynthesis cluster prote
  ------ inclusion threshold ------
       0.02   15.2   0.3      0.035   14.4   0.3    1.4  1  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
      0.071   13.4   0.1       0.22   11.8   0.1    1.9  1  TFIIE_beta   TFIIE beta subunit core domain
      0.089   12.6   0.2       0.17   11.7   0.2    1.4  1  zf-U1        U1 zinc finger
       0.59   10.5   2.2        2.2    8.7   2.2    2.1  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding


Domain annotation for each model (and alignments):
>> SF3A2  Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.1   1.3e-21   3.4e-18       3      91 ..     137     238 ..     136     243 .. 0.79

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 1.3e-21
       SF3A2   3 rPgykvtkvrdpeteqvgllvevkypeike..evk.............PlhrimsaleqkleekpdkkvqyLliaaePYetiafkipskei.dksedkl 85 
                  P++k ++v+d++t+ vg++++v+y++ k+  + +             P++ri+s le  l++++++ ++yL+ia+ P+e+iaf++p+kei  +++d+ 
  CCD22828.1 137 IPKFKSINVKDTQTGLVGVAIQVDYNTEKAvnS-SeneesptenftfpPFIRIVSGLE--LSSSNEDGKKYLVIAYAPFENIAFQLPNKEIvFNDNDQN 232
                 6*************************5444321.12346788889999**********..8888899***********************633333555 PP

       SF3A2  86 wtfwdk 91 
                  +  d+
  CCD22828.1 233 KDAVDE 238
                 555555 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   2.1   1.6e-09   4.1e-06       2      25 .]      68      91 ..      67      91 .. 0.97

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.6e-09
      zf-met  2 yCelCnvtfnsesqlksHlqGKkH 25
                 C+lCn+++ s+s+ + Hl GKkH
  CCD22828.1 68 VCKLCNTMHVSWSSVERHLSGKKH 91
                6*********************** PP

>> OrsD  Orsellinic acid/F9775 biosynthesis cluster protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1         2     5e+03      53      70 ..      25      42 ..      16      50 .. 0.69
   2 !   16.3   0.0   3.9e-06      0.01       3      72 ..      58     128 ..      56     144 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2
        OrsD 53 mslrqldelareaeavsl 70
                ++ +q+del r++e++++
  CCD22828.1 25 QRRKQVDELLRKNEKIQY 42
                556788888888777665 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.9e-06
        OrsD   3 feyneeyrvliCreCkya.vlpselerHLrkrhrqlkrektqelletvehemslrqldelareaeavslps 72 
                 ++y+++ + l+C+ C++  v+ s++erHL  +++ l+  ++ + +e v++   ++  ++l++ ++ v+l +
  CCD22828.1  58 YIYKNHSGKLVCKLCNTMhVSWSSVERHLSGKKHGLNVLRRGAKQERVTAIGYKKDGEHLTEFQKSVELSK 128
                 578888999******9862666************9999988888888877755555555555555555544 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.3   1.4e-05     0.035      42      76 ..      58      92 ..      22     108 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
   zf-C2H2_2 42 ylrekieekleClyCekefkslealreHmkkkgHc 76
                y+ ++ + kl C +C++   s+++++ H++ k+H 
  CCD22828.1 58 YIYKNHSGKLVCKLCNTMHVSWSSVERHLSGKKHG 92
                667777779*********99**************6 PP

>> TFIIE_beta  TFIIE beta subunit core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   8.6e-05      0.22      33      54 ..      23      47 ..      15      62 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.6e-05
  TFIIE_beta 33 dlsdknwllleaLknnpkiey....D 54
                +l ++++++ e+L++n+ki+y    D
  CCD22828.1 23 NL-QRRKQVDELLRKNEKIQYtfeeD 47
                44.678999************66432 PP

>> zf-U1  U1 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   6.6e-05      0.17       6      35 ..      69      96 ..      66      98 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.6e-05
                ETTTTEEESS-SHHHHHHHHTSHHHHHHHH CS
       zf-U1  6 CdYCdiyLthDspsvRksHngGrkHkenvk 35
                C+ C+++    s sv + H +G+kH  nv 
  CCD22828.1 69 CKLCNTMHVSWS-SV-ERHLSGKKHGLNVL 96
                999999964434.66.**********9985 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.2   0.00086       2.2       3      26 ..      68      91 ..      66      91 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00086
                 BBTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz  3 YCvlCdKyFksenaldnHlkSKkH 26
                  C+lC+ +  s ++ + Hl++KkH
   CCD22828.1 68 VCKLCNTMHVSWSSVERHLSGKKH 91
                 59****999*************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1085  (0.0605165); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1972.86
//
Query:       CCD22829.1  [L=535]
Description: hypothetical protein NDAI_0A06750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-66  222.4   0.0    7.3e-66  221.5   0.0    1.5  1  SIR2          Sir2 family
    2.8e-63  212.3   1.0    5.6e-63  211.3   1.0    1.5  1  DUF592        Protein of unknown function (DUF592)
    0.00048   19.9   0.0       0.47   10.2   0.0    2.3  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.5   0.0   1.2e-69   7.3e-66       1     177 []     233     444 ..     233     444 .. 0.99

  Alignments for each domain:
  == domain 1  score: 221.5 bits;  conditional E-value: 1.2e-69
                 -GGGGGGGT---SSSTTSHHHHSCHHHHSSHHHHHHHHHHHHH..HHHHHHHHHHCCTSS--HHHHHHHHHHHTTCEEEEEES-SSSHHHHTT-S..SE CS
        SIR2   1 GAGiStesGipdfRskeGlyaklakeelaspealfskkllvee..vfyniarellaeeaepnaaHkalkklekkgkllrliTQNiDgLekkaGsk..kv 95 
                 GAG+St++GipdfRs+eG+y+k+++ +l++p+++f++++++++  vfynia+++l++e+ ++++H+++k+l +kgkllr++TQNiD+Le++aG+   k+
  CCD22829.1 233 GAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYDIFMQDpsVFYNIANMVLPPENIYSPLHSFIKMLYDKGKLLRNYTQNIDNLESYAGIPadKL 331
                 9*********************************************************************************************999** PP

                 EETTEEEEEEEETTTSBEEECCGGHCHHHCCTT.B-TTTCC..............................BEEEEE--CTSB-SHHHHHHHH.HHHH- CS
        SIR2  96 velHGslakakcvkcekkldkeelqeeieaekvpecekcgk..............................llkpdvvfFGealpdklkklie.kveea 163
                 +++HGs+a+a+cv+c++kl +e+++++i++ ++p c++c++                              +lkpd++fFGealp+k++k i+ ++ ++
  CCD22829.1 332 IQCHGSFATASCVTCHWKLPGEKIFSNIRNLELPLCPYCYEkrkqyfpasdpneetqvenplkdrilnsfgVLKPDITFFGEALPSKFHKSIReDILKC 430
                 ********************************************************************************************99***** PP

                 SEEEEES--STSTT CS
        SIR2 164 dlllviGtSlkVap 177
                 dll++iGtSlkVap
  CCD22829.1 431 DLLICIGTSLKVAP 444
                 ************98 PP

>> DUF592  Protein of unknown function (DUF592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.3   1.0   9.4e-67   5.6e-63       3     153 .]      81     232 ..      79     232 .. 0.98

  Alignments for each domain:
  == domain 1  score: 211.3 bits;  conditional E-value: 9.4e-67
      DUF592   3 vpkkpekpiilgkdsksgkyvlpeitkedslnarlfLKkyglkkFldkYLPeelnslyiyelIklLGFelkdkellnaiskvve.veadseekvekeel 100
                 +p +p+kpi +gk++ s+k v+p+++ked+lnar++LK+ g+k+Fld+YLP+elnsly+y lIklLGFe+kd+el+++i+k ve  e++s +++ +++l
  CCD22829.1  81 KPVAPSKPIFIGKNPLSNKLVFPAFSKEDTLNARMYLKYMGSKRFLDAYLPNELNSLYLYCLIKLLGFECKDRELIRNIYKYVEsNESNSFDNLIYSDL 179
                 67899*******************************************************************************888999999999*** PP

      DUF592 101 eDpLekkeivrlikdLqkainkvlstrlrlsnfstidhfvdklkkakkilVlt 153
                  DpL+kk++vrlikdLqkainkvl+trl+l+nfstid+fvd lk+ak+ilVlt
  CCD22829.1 180 SDPLHKKFTVRLIKDLQKAINKVLCTRLKLPNFSTIDNFVDALKSAKQILVLT 232
                 ****************************************************9 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00061       3.6       1      25 [.     215     239 ..     215     246 .. 0.89
   2 !   10.2   0.0   7.8e-05      0.47      59     114 ..     411     466 ..     398     485 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00061
                   HHHHHHHHHH-SSEEEEE-CHHCHT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvars 25 
                   i+  +++lk+ak++++l G gv++s
    CCD22829.1 215 IDNFVDALKSAKQILVLTGAGVSTS 239
                   67889*****************976 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 7.8e-05
                   EEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTTTTTTT-.EEEEEESSCC CS
  TPP_enzyme_M  59 ylgmlglhgskaanealeeaDlvlalGarfddirttgsepefapea.kiihididpa 114
                   +   l    +k+ +e + ++Dl++++G+ ++    +++  ++ p +   + i+ dp 
    CCD22829.1 411 FGEALPSKFHKSIREDILKCDLLICIGTSLKV-APVSEIVNMLPANvPQVLINRDPV 466
                   3336777778999999*************988.444555555665445566666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 4108.55
//
Query:       CCD22830.1  [L=170]
Description: hypothetical protein NDAI_0A06760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.4e-16   57.5   0.0    3.8e-15   55.6   0.0    1.9  2  HLH             Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
      0.068   13.1   0.0       0.12   12.3   0.0    1.4  1  Noelin-1        Neurogenesis glycoprotein
      0.092   13.5   0.0       0.18   12.5   0.0    1.4  1  NAM-associated  No apical meristem-associated C-terminal doma


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   6.4e-19   3.8e-15       7      53 .]      22     100 ..      18     100 .. 0.97
   2 ?   -0.5   0.0      0.21   1.3e+03      19      28 ..     116     125 ..     101     147 .. 0.63

  Alignments for each domain:
  == domain 1  score: 55.6 bits;  conditional E-value: 6.4e-19
                 HHHHHHHHHHHHHHHHHHHCST................................CSTTSS-STHHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsaleeLrellP................................slppskKlsKaeiLekAveYIkhLq 53 
                 +++r+RRd+iN++++eL  l+P                                +++++ K++K +iL++AveYI  Lq
  CCD22830.1  22 QNDRKRRDNINDRIQELLALIPkefftdyynsinsgestsgetpgsastprpkgTGTRDGKPNKGQILTQAVEYITFLQ 100
                 578*************************************************99999999****************998 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.21
                 HHHHHHHCST CS
         HLH  19 aleeLrellP 28 
                 ++++L +++ 
  CCD22830.1 116 KIQKLARMVN 125
                 6788888887 PP

>> Noelin-1  Neurogenesis glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     2e-05      0.12      11      90 ..      55     135 ..      47     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2e-05
    Noelin-1  11 ssaqdadGrCvCtvvaPaqd.vCsrDarsrqlrqllekvqnlsqsievldlRtsrdlqyvrktetllktlesklkvveedr 90 
                  s + ++G    ++ +P ++ + +rD + ++ + l++ v+ ++   + +d+R +++++++ k ++l + +++ +++v+ ++
  CCD22830.1  55 NSGESTSGETPGSASTPRPKgTGTRDGKPNKGQILTQAVEYITFLQNEVDKRNREEVEMILKIQKLARMVNKSIDDVNLEN 135
                 577788888888999998753789************************************************999987654 PP

>> NAM-associated  No apical meristem-associated C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     3e-05      0.18      62     151 ..      57     135 ..      45     143 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
  NAM-associated  62 esaadsestsssrlkRPiGkkkaKekrkeaskdeealeklasaqkkiakkskekkeeaeleekkldieeekveaeqrqaeeeImskDlsg 151
                      ++ + e++ s +++RP+G+     k ++ +  ++a+e++++ q++++k+++e+ e +      l+i++     + r+++++I +++l++
      CCD22830.1  57 GESTSGETPGSASTPRPKGTGTRDGKPNKGQILTQAVEYITFLQNEVDKRNREEVEMI------LKIQK-----LARMVNKSIDDVNLEN 135
                     333445666777799**9998877777777999****************999999774......44444.....4456666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1314.38
//
Query:       CCD22831.1  [L=835]
Description: hypothetical protein NDAI_0A06770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.4e-112  377.2  16.3    2.6e-82  277.4   1.4    3.6  3  NARP1       NMDA receptor-regulated protein 1
    1.3e-11   43.7   9.0     0.0093   16.0   0.0    7.7  6  TPR_2       Tetratricopeptide repeat
    1.5e-11   44.6   0.4       0.11   13.0   0.0    5.8  6  TPR_19      Tetratricopeptide repeat
    4.2e-09   36.9   0.0       0.23   12.2   0.0    4.9  4  TPR_16      Tetratricopeptide repeat
    7.2e-07   29.5   4.2       0.39   11.6   0.0    6.6  6  TPR_14      Tetratricopeptide repeat
    3.2e-06   26.9  16.4     0.0039   17.3   0.0    7.0  7  TPR_8       Tetratricopeptide repeat
    9.2e-06   25.8  13.6    0.00059   20.0   0.3    4.8  4  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
    0.00022   20.9   9.6      0.073   12.9   0.0    7.2  8  TPR_1       Tetratricopeptide repeat
     0.0014   18.9   6.7        2.3    8.6   0.1    5.9  7  TPR_12      Tetratricopeptide repeat
     0.0033   17.5   6.0        9.6    6.4   0.0    4.5  4  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
     0.0093   15.8   0.4         16    5.5   0.0    5.2  6  TPR_10      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.022   15.4   4.7        1.1   10.1   0.0    6.0  6  TPR_6       Tetratricopeptide repeat
      0.031   14.6   9.7        4.4    7.9   0.0    6.1  6  TPR_17      Tetratricopeptide repeat
      0.049   13.3   0.0      0.049   13.3   0.0    3.4  4  TPR_11      TPR repeat
      0.057   12.8   0.0        1.1    8.5   0.0    2.4  2  TPR_MalT    MalT-like TPR region
      0.067   13.3   0.2        1.7    8.8   0.1    2.8  2  Rapsyn_N    Rapsyn N-terminal myristoylation and linker regio
       0.13   12.9   0.2       0.89   10.2   0.2    2.4  2  PglD_N      PglD N-terminal domain
       0.15   12.4   0.0       0.61   10.4   0.0    2.1  1  DUF1805     Domain of unknown function (DUF1805)
        5.5    7.4   7.8        1.6    9.1   0.4    3.2  2  YvbH_ext    YvbH-like oligomerisation region


Domain annotation for each model (and alignments):
>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.47   4.4e+02     205     251 ..      34      80 ..      19      85 .. 0.62
   2 !  277.4   1.4   2.8e-85   2.6e-82       1     316 [.     200     511 ..     200     515 .. 0.93
   3 !  106.0   3.4   2.5e-33   2.4e-30     317     514 ..     542     720 ..     535     721 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.47
                 HT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHH CS
       NARP1 205 lgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmee 251
                  ++++k+++++d  ++++ + ++  + K+  l   G+ ++Aa ++++
  CCD22831.1  34 NKEYKKSIKILDVILKKSSSNTDSLVLKGANLFALGEKDEAAVLIKN 80 
                 34555666666666666666666666666666666666666655554 PP

  == domain 2  score: 277.4 bits;  conditional E-value: 2.8e-85
                 HHHHHHHHHHHHHHHHH.....THHHHHHHHHHHHGGG---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-CHHHHHHHHHT..SSS-HHHHHH CS
       NARP1   1 leesellLyknqiieea.....gkleeAlehLeekekqivDklavketkaelllkLgrkeeAeatyeaLlernpenskYyeglekakklskedeealla 94 
                 +e+ e l+ykn i+ +a     +kl++ l+hL+  e +++Dk  ++e ka++++k+g++++A+ +y++L++rnp+n +Yy  le +++++++ ++ ++a
  CCD22831.1 200 YEHNECLMYKNDIMFKAaggnrDKLQNVLKHLNVIEPNVFDKFGLLERKASIYMKMGQFKDASIVYRTLIKRNPDNFNYYPLLEISLGIRSD-NKLRKA 297
                 79**********997653333368899*************************************************************8776.8999** PP

                 HHHHTTTS-TT-SHHHHTHHHH--.HHHHHHHHHHHHHHHHHCT-TTHHHHHGGGGGGSCHH..HHHHHHHHHHHTTTTTSSSSTTGG.GSS----SSH CS
       NARP1  95 lydelaekyprsdaprRlpLdfle.GeeFkelvdkYlrkaLrkgvPslfanlksLYedkeKv..kileelvegyvkslktsgklsesdnedsekepesa 190
                 ly +l+e yp+++ p+ lpL f++  ee +++++kY++ +L++gvP+ f+nlk+LY+++ K   + lee+v++y +sl+ ++              + +
  CCD22831.1 298 LYGKLQEFYPNCEPPKYLPLTFIQdKEELSKNLEKYVTAQLQRGVPAAFSNLKPLYKKRGKIvsNALEEIVLKYFESLNPKS-------------DHIC 383
                 ***********************94578******************************999633789999999998886543.............3579 PP

                 HHHHHHHHHHHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCTTT-HHHHHHHHHHHHHTT-HHHHHHHHTTTS-T CS
       NARP1 191 llwvlyflAqhydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeearklDlaDRyiNskcakymLradeveeAeetvslFtre 289
                 ++w+ y+lAqhy  l++  kA +yid+ i+htptlvely+ Kari+kh G l++Aa+++ee+r+lDl+DR+iN+k +ky Lra+++++A +++s+Ft++
  CCD22831.1 384 YIWTGYYLAQHYLFLKDLVKAQHYIDTVISHTPTLVELYILKARIFKHLGLLDEAASILEEGRQLDLQDRFINCKTVKYFLRANKIDKAVDIASVFTKN 482
                 9************************************************************************************************** PP

                 TS..HHHHHHHHTT-HHHHHHHHHHHHHT CS
       NARP1 290 ev..daledlnemqcmWfetedgeaylrq 316
                 +   + ++dl+ +++ Wf +e++eay+r 
  CCD22831.1 483 DDapNGIKDLHFVEASWFIVEQAEAYYRL 511
                 98788899******************996 PP

  == domain 3  score: 106.0 bits;  conditional E-value: 2.5e-33
                 T-HHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHT-HHHHHHHHHHHCTTT-SHHHHHHHHHHHHHHHHHHH-TTGGG---HHHHHT-S-HHHHHHHHH CS
       NARP1 317 kklglALKrfhavekhFdeieeDqFDFHtyclRkmtlraYvdllrledelrshpfyvkaakgaievYlkledkpkakeeekeeaksaelseaerkklrk 415
                 k  glALKrf a++k ++++e+Dq DFH+yc+Rk+t raY+++l++ ++l+++p yv+a +ga ++Y++++ + ++    ++    ++ s+a+ kk+  
  CCD22831.1 542 KYKGLALKRFYAISKFYKQFEDDQLDFHSYCMRKGTPRAYLEMLQWGNSLYTKPIYVRAMEGASKIYFDIFSENSKIGIVDQ---DSSASSANYKKV-- 635
                 5679*******************************************************************98877654444...344555555555.. PP

                 HHHHHHHHHHHHHHHHHHHH--.......-------------S-SSSTTTT-S-HHHH.HHHHHTTTGGGTTT-THHHHHHHHHHHHTT-HHHHHHHHH CS
       NARP1 416 kakkaekkaekeeaekaekekekkaaekkakkedeeakkededplgekLvkteepLee.AlkflkpLlklaaeniethllafevyiRkkklllalkalk 513
                   kk++  +++ ++e++             k      + +d d +ge L++te pLee A++f  +  k  +en + ++l fe  ++ +kl+l++ al+
  CCD22831.1 636 --KKESTSLRRRKEEEK-------------KIVAAYGEDQDRDVFGEVLINTEVPLEEfASNFYDNYCKQVNENEKDFVLEFEYQYKAGKLVLCFSALT 719
                 ..455444444333311.............111223445699***************9899**********************************9997 PP

                 H CS
       NARP1 514 k 514
                 k
  CCD22831.1 720 K 720
                 5 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.39   3.7e+02      15      25 ..      23      33 ..      20      51 .. 0.66
   2 ?    4.4   0.0     0.053        50       4      28 ..      58      82 ..      56      82 .. 0.86
   3 !    8.6   0.0    0.0024       2.3       3      29 ..      94     120 ..      92     125 .. 0.90
   4 !   16.0   0.0   9.9e-06    0.0093       4      34 .]     245     275 ..     243     275 .. 0.94
   5 !    7.1   0.0     0.007       6.6       5      33 ..     389     417 ..     389     418 .. 0.95
   6 ?    3.6   0.1      0.09        85       2      31 ..     420     449 ..     419     452 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.39
       TPR_2 15 gdyeeAleafe 25
                g++ eAl+++e
  CCD22831.1 23 GQFIEALKLYE 33
                55556666555 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.053
       TPR_2  4 lynlGlayyklgdyeeAleafekAl 28
                l   G  +++lg+ +eA+ + + Al
  CCD22831.1 58 LVLKGANLFALGEKDEAAVLIKNAL 82
                5678999**********99888886 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0024
       TPR_2   3 alynlGlayyklgdyeeAleafekAle 29 
                 +++ lG   ++ +dy+  +++f+++l+
  CCD22831.1  94 CCHLLGIYMRQVKDYAASIKWFQACLA 120
                 6899********************997 PP

  == domain 4  score: 16.0 bits;  conditional E-value: 9.9e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                 l + + +y+k+g++++A   ++  ++ +P+n
  CCD22831.1 245 LERKASIYMKMGQFKDASIVYRTLIKRNPDN 275
                 678999***********************98 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.007
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                 y+l++ y+ l+d+ +A ++ + ++++ P+
  CCD22831.1 389 YYLAQHYLFLKDLVKAQHYIDTVISHTPT 417
                 89**********************99997 PP

  == domain 6  score: 3.6 bits;  conditional E-value: 0.09
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                 e++   +++  +lg ++eA+  +e+  +ld
  CCD22831.1 420 ELYILKARIFKHLGLLDEAASILEEGRQLD 449
                 789999***************999999987 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0066       6.3       1      49 [.      31      79 ..      23      84 .. 0.90
   2 !   13.0   0.0   0.00012      0.11       5      64 ..     106     166 ..     102     171 .. 0.90
   3 ?    0.2   0.0       1.2   1.1e+03      18      50 ..     153     185 ..     150     187 .. 0.85
   4 !    9.5   0.0    0.0015       1.4      32      62 ..     249     279 ..     226     284 .. 0.88
   5 ?    4.6   0.0      0.05        48      11      57 ..     369     417 ..     362     428 .. 0.73
   6 ?    5.7   0.0     0.023        22       6      52 ..     400     446 ..     399     453 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0066
      TPR_19  1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLd 49
                l++++ y   +++l  +l+++  n + + l    l+alg+ deA  l++
  CCD22831.1 31 LYENKEYKKSIKILDVILKKSSSNTDSLVLKGANLFALGEKDEAAVLIK 79
                5788889999999999****************************98876 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00012
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.aryasL 64 
                 +dya+ ++ +++ l+   +n  +  +LA ++ ++++++ A    ++++e++p   a++ sL
  CCD22831.1 106 KDYAASIKWFQACLANGSNNNQIYRDLATLQSQTNDFKGALVSRKEYWESYPGYrANWTSL 166
                 69****************************************9999999999965777665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.2
      TPR_19  18 lqedpknaearllLAeallalgqldeAealLda 50 
                 ++ +p++ + +  LA a+  +g+ ++A+++L++
  CCD22831.1 153 WESYPGYRANWTSLAVAQDINGERQQAINTLSQ 185
                 677899889999999999999********9975 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.0015
      TPR_19  32 AeallalgqldeAealLdalpeedpddarya 62 
                 A +++++gq+++A  +  +l + +pd+ +y 
  CCD22831.1 249 ASIYMKMGQFKDASIVYRTLIKRNPDNFNYY 279
                 789***********************95554 PP

  == domain 5  score: 4.6 bits;  conditional E-value: 0.05
      TPR_19  11 lalleqalqedpknaearl.....lLAeallalgqldeAealLdalpeedpd 57 
                 l+++e++   +pk++ + +     +LA+ +l l++l +A+  +d++  ++p 
  CCD22831.1 369 LKYFESL---NPKSDHICYiwtgyYLAQHYLFLKDLVKAQHYIDTVISHTPT 417
                 5666666...788444444444449****************99999888876 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.023
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 d+  A+ +   ++++ p   e+ +l A++   lg ldeA  +L++  
  CCD22831.1 400 DLVKAQHYIDTVISHTPTLVELYILKARIFKHLGLLDEAASILEEGR 446
                 67788888889999999999***********************9866 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.021        20       5      58 ..      29      79 ..      27      86 .. 0.87
   2 ?    5.4   0.0     0.031        30       8      54 ..     103     146 ..      97     158 .. 0.88
   3 ?    6.8   0.0     0.011        10       3      33 ..     248     275 ..     247     279 .. 0.89
   4 !   12.2   0.0   0.00024      0.23       3      58 ..     391     443 ..     389     448 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.021
      TPR_16  5 raalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58
                + ++++++y + ++ l+  lk+    + + ++l l+g  ++++g+ +eAa l++
  CCD22831.1 29 LKLYENKEYKKSIKILDVILKKS---SSNTDSLVLKGANLFALGEKDEAAVLIK 79
                55899999999999999999999...99*********************97665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.031
      TPR_16   8 lragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 ++ +dy++ ++ ++a l+++   + + + +  l+ +  + +++++A+
  CCD22831.1 103 RQVKDYAASIKWFQACLANG---SNNNQIYRDLATLQSQTNDFKGAL 146
                 56789999999999999999...999999999999999999999996 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.011
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPda 33 
                 +a ++++ g++ dA  ++++++kr+   Pd+
  CCD22831.1 248 KASIYMKMGQFKDASIVYRTLIKRN---PDN 275
                 6889*********************...886 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 0.00024
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyr 58 
                 la+ +l ++d  +A+++ ++++      P  +e + l+++++ ++g l+eAa  ++
  CCD22831.1 391 LAQHYLFLKDLVKAQHYIDTVISHT---PTLVELYILKARIFKHLGLLDEAASILE 443
                 7999*********************...************************5554 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       6.5   6.2e+03      13      25 ..      21      33 ..      16      34 .. 0.85
   2 ?   -1.2   0.0       5.6   5.3e+03      11      28 ..      65      82 ..      58      84 .. 0.82
   3 ?    4.8   0.0     0.067        63       7      43 ..      98     134 ..      96     145 .. 0.89
   4 !   11.6   0.0   0.00042      0.39       6      37 ..     247     278 ..     242     282 .. 0.86
   5 ?    3.9   0.0      0.13   1.2e+02       5      44 .]     389     428 ..     386     428 .. 0.94
   6 ?    6.5   0.2     0.019        18       2      34 ..     420     452 ..     419     456 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 6.5
      TPR_14 13 alGdpdeAiallr 25
                  G++ eA++l++
  CCD22831.1 21 DTGQFIEALKLYE 33
                579********97 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 5.6
      TPR_14 11 llalGdpdeAiallrral 28
                l+alG+ deA+ l + al
  CCD22831.1 65 LFALGEKDEAAVLIKNAL 82
                789*******99888776 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.067
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 l+ ++++  d++++i+ ++++la + ++ ++++ la 
  CCD22831.1  98 LGIYMRQVKDYAASIKWFQACLANGSNNNQIYRDLAT 134
                 77888899***************99999888888885 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.00042
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaea 37 
                 + a++++  G++++A  ++r +++++Pd+  +
  CCD22831.1 247 RKASIYMKMGQFKDASIVYRTLIKRNPDNFNY 278
                 5599************************9655 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.13
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                 + la+ +l l d+ +A  + + ++++ P+  e+++l a++
  CCD22831.1 389 YYLAQHYLFLKDLVKAQHYIDTVISHTPTLVELYILKARI 428
                 789*********************************9985 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.019
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdd 34 
                 e++ + a+++ +lG +deA+ +l++  +l+ +d
  CCD22831.1 420 ELYILKARIFKHLGLLDEAASILEEGRQLDLQD 452
                 677788*******************98877655 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         9   8.5e+03      12      25 ..      20      33 ..      16      34 .. 0.75
   2 ?    0.2   0.0       1.2   1.2e+03       3      26 ..      57      80 ..      55      83 .. 0.79
   3 !    6.7   0.1    0.0099       9.3       3      28 ..      93     119 ..      91     120 .. 0.91
   4 ?   -1.4   0.0       4.1   3.9e+03       4      29 ..     163     188 ..     162     191 .. 0.82
   5 !   17.3   0.0   4.1e-06    0.0039       6      34 .]     247     275 ..     243     275 .. 0.94
   6 !    8.1   0.0    0.0037       3.5       2      26 ..     420     444 ..     419     452 .. 0.90
   7 ?   -2.3   0.0       8.1   7.6e+03      21      32 ..     460     471 ..     460     472 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 9
                HHTT-HHHHHHHHH CS
       TPR_8 12 lklgdyeeAkeyye 25
                +++g++ eA + ye
  CCD22831.1 20 KDTGQFIEALKLYE 33
                67888888888886 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.2
                HHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8  3 ayynlgsiylklgdyeeAkeyyek 26
                +++++g  ++ lg+++eA   ++ 
  CCD22831.1 57 SLVLKGANLFALGEKDEAAVLIKN 80
                6788999999********766655 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0099
                 HHHHHHHHH.HHTT-HHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiy.lklgdyeeAkeyyekal 28 
                 ++++l  iy ++ +dy +++++++ +l
  CCD22831.1  93 ICCHLLGIYmRQVKDYAASIKWFQACL 119
                 7899999999***************98 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 4.1
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekale 29 
                 +  l+ + +  g+ ++A+ ++ +  +
  CCD22831.1 163 WTSLAVAQDINGERQQAINTLSQFEK 188
                 77899999999*******99877555 PP

  == domain 5  score: 17.3 bits;  conditional E-value: 4.1e-06
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +++siy+k+g+++ A  +y+  ++ +pdn
  CCD22831.1 247 RKASIYMKMGQFKDASIVYRTLIKRNPDN 275
                 79*************************97 PP

  == domain 6  score: 8.1 bits;  conditional E-value: 0.0037
                 CHHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyek 26 
                 e+y ++++i + lg ++eA + +e+
  CCD22831.1 420 ELYILKARIFKHLGLLDEAASILEE 444
                 89*******************9997 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 8.1
                 HHHHHHHHHHHH CS
       TPR_8  21 keyyekaleldp 32 
                 ++y+ +a ++d+
  CCD22831.1 460 VKYFLRANKIDK 471
                 58*******997 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3   6.2e-07   0.00059      20      81 ..      18      80 ..       9      81 .. 0.88
   2 ?    1.2   0.0      0.46   4.4e+02      30      55 ..     249     275 ..     244     282 .. 0.80
   3 !   10.3   0.2   0.00067      0.63      27      81 ..     389     444 ..     371     445 .. 0.92
   4 ?   -1.4   0.7       2.9   2.7e+03       8      49 ..     680     721 ..     678     728 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.2e-07
                H--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3 20 tespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81
                ++ +   +  Al ly+n++yk+ +++l+   k+ s++  +++l++  l++L++ +eA  ++++
  CCD22831.1 18 AKKDTGQFIEALKLYENKEYKKSIKILDVIlKKSSSNTDSLVLKGANLFALGEKDEAAVLIKN 80
                6666778899***********************************************988875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.46
                 HHHHHHTT-HHHHHHHHHCT.SHHHC- CS
      ANAPC3  30 AlclylngqykrAyellrka.klnsks 55 
                 A  + ++gq+k A  ++r++ k n+ +
  CCD22831.1 249 ASIYMKMGQFKDASIVYRTLiKRNPDN 275
                 888999*****9999999987777665 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00067
                 HHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  27 yllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 y+lA+ ++ +++  +A++++++     ++  +  +l+A+    L+ ++eA ++Le+
  CCD22831.1 389 YYLAQHYLFLKDLVKAQHYIDTViSHTPTLVELYILKARIFKHLGLLDEAASILEE 444
                 899********************7777777799999999999***********996 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 2.9
                 HHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3   8 AiflaerllaaetespedayllAlclylngqykrAyellrka 49 
                 A  +++ ++++ +e+++d  l  +  y++g+   ++  l k+
  CCD22831.1 680 ASNFYDNYCKQVNENEKDFVLEFEYQYKAGKLVLCFSALTKY 721
                 5567889999999999999999999******99999999887 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2       1.2   1.2e+03      15      25 ..      23      33 ..      18      42 .. 0.75
   2 ?    2.3   0.0      0.18   1.7e+02       5      28 ..      59      82 ..      56      83 .. 0.85
   3 ?   -0.2   0.0       1.1     1e+03      13      29 ..     104     120 ..      97     125 .. 0.86
   4 ?   -0.8   0.0       1.7   1.6e+03       4      22 ..     163     181 ..     163     185 .. 0.89
   5 !   12.9   0.0   7.7e-05     0.073       6      34 .]     247     275 ..     244     275 .. 0.95
   6 ?    1.6   0.0      0.29   2.7e+02       5      30 ..     389     414 ..     389     418 .. 0.87
   7 ?    0.5   0.0      0.65   6.1e+02       2      21 ..     420     439 ..     419     449 .. 0.83
   8 ?   -2.6   0.1       6.3   5.9e+03       1       6 [.     505     510 ..     503     511 .. 0.51

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.2
                T-HHHHHHHHH CS
       TPR_1 15 gkydeAleyye 25
                g++ eAl+ ye
  CCD22831.1 23 GQFIEALKLYE 33
                67777777776 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.18
                HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1  5 ynlGnayfklgkydeAleyyekAL 28
                  +G+ +f lg+ deA    + AL
  CCD22831.1 59 VLKGANLFALGEKDEAAVLIKNAL 82
                5688889*********99988887 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.1
                 HTT-HHHHHHHHHHHHH CS
       TPR_1  13 klgkydeAleyyekALe 29 
                 + ++y   ++ ++ +L 
  CCD22831.1 104 QVKDYAASIKWFQACLA 120
                 669**********9986 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.7
                 HHHHHHHHHHTT-HHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAle 22 
                 +  l++a   +g+ ++A+ 
  CCD22831.1 163 WTSLAVAQDINGERQQAIN 181
                 889**************96 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 7.7e-05
                 HHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALelnPnn 34 
                 +++ +y+k+g++++A   y+  ++ nP+n
  CCD22831.1 247 RKASIYMKMGQFKDASIVYRTLIKRNPDN 275
                 7899***********************98 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.29
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALel 30 
                 y l++ y+ l+++ +A  y + ++++
  CCD22831.1 389 YYLAQHYLFLKDLVKAQHYIDTVISH 414
                 789*************9999888876 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHHTT-HHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAl 21 
                 + +  ++ ++ +lg +deA 
  CCD22831.1 420 ELYILKARIFKHLGLLDEAA 439
                 6789999***********96 PP

  == domain 8  score: -2.6 bits;  conditional E-value: 6.3
                 HHHHHH CS
       TPR_1   1 akalyn 6  
                 a+a+y+
  CCD22831.1 505 AEAYYR 510
                 455555 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.2   1.1e+03      16      27 ..      22      33 ..      17      34 .. 0.77
   2 ?    5.4   0.0     0.023        22      45      73 ..      92     120 ..      56     124 .. 0.67
   3 !    8.6   0.1    0.0025       2.3       8      65 ..      97     146 ..      92     148 .. 0.81
   4 ?   -1.5   0.0       3.3   3.1e+03      41      69 ..     156     184 ..     147     191 .. 0.73
   5 ?    0.8   0.0      0.63   5.9e+02       6      27 ..     245     266 ..     242     272 .. 0.79
   6 ?    0.7   0.0       0.7   6.6e+02      39      67 ..     379     407 ..     372     414 .. 0.76
   7 ?    5.7   0.3      0.02        19       9      74 ..     391     448 ..     382     451 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.2
      TPR_12 16 lgrydeAlelle 27
                 g++ eAl+l+e
  CCD22831.1 22 TGQFIEALKLYE 33
                788999999887 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.023
      TPR_12  45 attlrnLgrlyralgryeeAlelleeala 73 
                 +++ + Lg++ r+ ++y++ +++++ +la
  CCD22831.1  92 SICCHLLGIYMRQVKDYAASIKWFQACLA 120
                 55556777777777777777777777765 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0025
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAl 65 
                  l+   r+ ++y+ ++++++++l+        ++    +++r+L++l++++++++ Al
  CCD22831.1  97 LLGIYMRQVKDYAASIKWFQACLANG-----SNNN---QIYRDLATLQSQTNDFKGAL 146
                 488888999*************8887.....3432...48999999999999999886 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 3.3
      TPR_12  41 hpltattlrnLgrlyralgryeeAlelle 69 
                 +p++ +    L+ +++  g+ ++A++ l 
  CCD22831.1 156 YPGYRANWTSLAVAQDINGERQQAINTLS 184
                 56666667788888888888888888765 PP

  == domain 5  score: 0.8 bits;  conditional E-value: 0.63
      TPR_12   6 lnnlaavlrrlgrydeAlelle 27 
                 l + a++++++g++ +A   ++
  CCD22831.1 245 LERKASIYMKMGQFKDASIVYR 266
                 457899********99976665 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.7
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlel 67 
                  dh ++++t + L++ y+ l+++ +A+ +
  CCD22831.1 379 SDHICYIWTGYYLAQHYLFLKDLVKAQHY 407
                 57777888888888888888888887765 PP

  == domain 7  score: 5.7 bits;  conditional E-value: 0.02
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 la+ ++ l+++ +A+ + ++++         + p +++ ++  +r++  lg ++eA ++lee  ++
  CCD22831.1 391 LAQHYLFLKDLVKAQHYIDTVI--------SHTPTLVELYILKARIFKHLGLLDEAASILEEGRQL 448
                 7777777777777777777773........445669999999******************998776 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0      0.01       9.6      12      41 ..      32      61 ..      27      63 .. 0.88
   2 ?    2.5   0.1      0.16   1.5e+02       3      37 ..      94     128 ..      92     136 .. 0.88
   3 ?    3.0   0.0      0.11   1.1e+02      11      34 ..     252     275 ..     250     284 .. 0.92
   4 ?    5.0   0.2     0.026        25       5      37 ..     389     421 ..     387     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.01
                HHHT-HHHHHHHHHHHHHHTTS-HHHHHHH CS
  Fis1_TPR_C 12 yklgeYseArryvdalLeiEPenrQaqsLk 41
                y  +eY+++ + +d +L++  +n   + Lk
  CCD22831.1 32 YENKEYKKSIKILDVILKKSSSNTDSLVLK 61
                7789****************9999888887 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHH CS
  Fis1_TPR_C   3 clYylAlGhyklgeYseArryvdalLeiEPenrQa 37 
                 c+++l +    +++Y  + +  +a+L+   +n+Q 
  CCD22831.1  94 CCHLLGIYMRQVKDYAASIKWFQACLANGSNNNQI 128
                 777777777789********************996 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.11
                 HHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  11 hyklgeYseArryvdalLeiEPen 34 
                 ++k+g++++A    ++l++  P+n
  CCD22831.1 252 YMKMGQFKDASIVYRTLIKRNPDN 275
                 68*********************9 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.026
                 HHHHHHHHHHT-HHHHHHHHHHHHHHTTS-HHH CS
  Fis1_TPR_C   5 YylAlGhyklgeYseArryvdalLeiEPenrQa 37 
                 YylA  ++ l++  +A  y+d+++++ P     
  CCD22831.1 389 YYLAQHYLFLKDLVKAQHYIDTVISHTPTLVEL 421
                 9*************************9976555 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.36   3.4e+02      13      26 ..      20      33 ..      17      34 .. 0.87
   2 ?    0.3   0.0      0.76   7.1e+02       9      29 ..      62      82 ..      61      85 .. 0.83
   3 ?    5.5   0.0     0.017        16       4      30 ..      94     120 ..      93     120 .. 0.94
   4 ?    0.1   0.0      0.84     8e+02       5      22 ..     129     146 ..     127     147 .. 0.89
   5 ?   -2.5   0.0       5.7   5.4e+03       9      22 ..     249     262 ..     249     269 .. 0.82
   6 ?   -1.8   0.0       3.4   3.2e+03      13      27 ..     430     444 ..     426     447 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.36
      TPR_10 13 rqrgrydeAealle 26
                 ++g++ eA++l+e
  CCD22831.1 20 KDTGQFIEALKLYE 33
                579*********98 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.76
      TPR_10  9 analrqrgrydeAealleeal 29
                ++ l+++g+ deA  l + al
  CCD22831.1 62 GANLFALGEKDEAAVLIKNAL 82
                567999*******99877665 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.017
      TPR_10   4 slnNLanalrqrgrydeAealleeala 30 
                 +++ L+++ rq+++y+++ ++++ +la
  CCD22831.1  94 CCHLLGIYMRQVKDYAASIKWFQACLA 120
                 6788*********************97 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.84
      TPR_10   5 lnNLanalrqrgrydeAe 22 
                 + +La + +q++++++A+
  CCD22831.1 129 YRDLATLQSQTNDFKGAL 146
                 789************997 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 5.7
      TPR_10   9 analrqrgrydeAe 22 
                 a ++ ++g++++A 
  CCD22831.1 249 ASIYMKMGQFKDAS 262
                 67899*****9995 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 3.4
      TPR_10  13 rqrgrydeAeallee 27 
                  ++g +deA  +lee
  CCD22831.1 430 KHLGLLDEAASILEE 444
                 5678899**999998 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       2.3   2.1e+03       9      29 ..      31      50 ..      19      53 .. 0.76
   2 ?   -2.1   0.0       8.3   7.9e+03       3      20 ..      58      75 ..      56      81 .. 0.74
   3 ?   -2.0   0.0       7.8   7.3e+03      14      26 ..     174     186 ..     166     188 .. 0.78
   4 ?   10.1   0.0    0.0012       1.1       7      33 .]     249     275 ..     245     275 .. 0.91
   5 ?   -1.8   0.0       6.7   6.3e+03       7      24 ..     426     443 ..     424     444 .. 0.85
   6 ?   -0.8   0.0       3.4   3.2e+03      12      29 ..     465     482 ..     462     483 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 2.3
                HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  9 syrklgdtdkAlealerlike 29
                +y++ +++ k++++l+ ++k+
  CCD22831.1 31 LYEN-KEYKKSIKILDVILKK 50
                3444.4899999999888876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 8.3
                HHHHHHHHHHHHHHHHHH CS
       TPR_6  3 lyklalsyrklgdtdkAl 20
                l + +  +++lg++d+A 
  CCD22831.1 58 LVLKGANLFALGEKDEAA 75
                666666778888999996 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 7.8
                 HHHHHHHHHHHHH CS
       TPR_6  14 gdtdkAlealerl 26 
                 g+ ++A+ +l ++
  CCD22831.1 174 GERQQAINTLSQF 186
                 6899****99987 PP

  == domain 4  score: 10.1 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHHHH-TT- CS
       TPR_6   7 alsyrklgdtdkAlealerlikeYPdS 33 
                 a  y k+g+  +A   ++ lik+ Pd+
  CCD22831.1 249 ASIYMKMGQFKDASIVYRTLIKRNPDN 275
                 78899********************95 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 6.7
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAleale 24 
                 a+ ++ lg  d+A  +le
  CCD22831.1 426 ARIFKHLGLLDEAASILE 443
                 778888999*****9998 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 3.4
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6  12 klgdtdkAlealerlike 29 
                 ++++ dkA+++   + k+
  CCD22831.1 465 RANKIDKAVDIASVFTKN 482
                 47899*****99998876 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       5.1   4.8e+03       6      32 ..      48      74 ..      46      75 .. 0.87
   2 ?    2.7   0.3      0.21     2e+02       2      32 ..     115     145 ..     114     146 .. 0.91
   3 ?   -1.1   0.0       3.4   3.2e+03      16      33 ..     163     180 ..     161     180 .. 0.88
   4 ?   -1.3   0.0       3.9   3.7e+03      19      32 ..     248     261 ..     244     261 .. 0.87
   5 ?    3.6   0.1      0.11     1e+02       2      16 ..     265     279 ..     264     279 .. 0.89
   6 ?    7.9   0.0    0.0046       4.4       4      32 ..     410     438 ..     407     439 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 5.1
      TPR_17  6 leldPnnadaynnLAelllknGdlmtA 32
                l++  +n d++ +++  l  +G++++A
  CCD22831.1 48 LKKSSSNTDSLVLKGANLFALGEKDEA 74
                67788999***9999999999999887 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.21
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 ++ +l++  nn   y  LA+l+++ +d++ A
  CCD22831.1 115 FQACLANGSNNNQIYRDLATLQSQTNDFKGA 145
                 789999999999************9999877 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.4
      TPR_17  16 ynnLAelllknGdlmtAr 33 
                 ++ LA+++  nG+ ++A+
  CCD22831.1 163 WTSLAVAQDINGERQQAI 180
                 999*********988885 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 3.9
      TPR_17  19 LAelllknGdlmtA 32 
                 +A ++ k G++++A
  CCD22831.1 248 KASIYMKMGQFKDA 261
                 799*******9987 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.11
      TPR_17   2 ylkaleldPnnaday 16 
                 y+  ++++P+n++ y
  CCD22831.1 265 YRTLIKRNPDNFNYY 279
                 899********9876 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.0046
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtA 32 
                  ++ + P+ +++y ++A++++++G l++A
  CCD22831.1 410 TVISHTPTLVELYILKARIFKHLGLLDEA 438
                 6899********************88887 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       2.2   2.1e+03       8      18 ..      23      33 ..      20      43 .. 0.67
   2 ?   -2.7   0.1       5.1   4.8e+03       9      35 ..     107     133 ..     104     138 .. 0.79
   3 ?   13.3   0.0   5.2e-05     0.049       2      31 ..     250     279 ..     249     282 .. 0.94
   4 ?   -1.8   0.0       2.8   2.7e+03      27      35 ..     504     512 ..     503     513 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.2
      TPR_11  8 GkyeeAieaYk 18
                G++ eA++ Y+
  CCD22831.1 23 GQFIEALKLYE 33
                66667777765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.1
      TPR_11   9 kyeeAieaYkkAlkldPdnaeayynLG 35 
                 +y ++i+++++ l+  ++n  +y  L+
  CCD22831.1 107 DYAASIKWFQACLANGSNNNQIYRDLA 133
                 789999999988888888888887776 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 5.2e-05
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeay 31 
                  +y++ G++++A  +Y++ +k +Pdn + y
  CCD22831.1 250 SIYMKMGQFKDASIVYRTLIKRNPDNFNYY 279
                 59*************************998 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.8
      TPR_11  27 naeayynLG 35 
                 +aeayy L+
  CCD22831.1 504 QAEAYYRLH 512
                 699999985 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.22   2.1e+02      53     194 ..     173     193 ..     164     285 .. 0.51
   2 ?    8.5   0.0    0.0012       1.1     159     243 ..     417     494 ..     398     523 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.22
    TPR_MalT  53 qGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGiel 151
                 +                                                                                                  
  CCD22831.1 173 N-------------------------------------------------------------------------------------------------- 173
                 3.................................................................................................. PP

    TPR_MalT 152 leqlepeaaldayvllarialaqGdleeAetllekaeelares 194
                                        G+ ++A ++l + e+la+ +
  CCD22831.1 174 -----------------------GERQQAINTLSQFEKLAEGK 193
                 .......................44444444555555444443 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0012
    TPR_MalT 159 aaldayvllarialaqGdleeAetllekaeelaresnfhvdwlanaeevrvrlwlaqgdlaaaerwleaaelpsdddnhflelel 243
                 + ++ y+l ari    G l+eA+++le+  +l  +++f    + n +   v ++l  +++++a++ ++  ++++d+ n +++l++
  CCD22831.1 417 TLVELYILKARIFKHLGLLDEAASILEEGRQLDLQDRF----I-NCKT--VKYFLRANKIDKAVDIASVFTKNDDAPNGIKDLHF 494
                 57899***************************999999....3.4344..55899999999999999999999999886666655 PP

>> Rapsyn_N  Rapsyn N-terminal myristoylation and linker region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0018       1.7      12      48 ..      27      63 ..      17      89 .. 0.84
   2 ?    0.9   0.0      0.51   4.8e+02      41      62 ..     240     261 ..     226     267 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0018
    Rapsyn_N 12 kGLklyesndtekalrvWrkvLkktsdregkfrvLGc 48
                  Lklye+ + +k++++   +Lkk s + + + + G 
  CCD22831.1 27 EALKLYENKEYKKSIKILDVILKKSSSNTDSLVLKGA 63
                47*************************9999887775 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.51
    Rapsyn_N  41 gkfrvLGcLitahsemGkykea 62 
                 +kf +L      +++mG++k+a
  CCD22831.1 240 DKFGLLERKASIYMKMGQFKDA 261
                 7888898899999*******97 PP

>> PglD_N  PglD N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       9.1   8.6e+03      67      78 .]     291     302 ..     271     302 .. 0.80
   2 ?   10.2   0.2   0.00094      0.89      11      71 ..     605     662 ..     602     668 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 9.1
      PglD_N  67 nnkvRkkiaekl 78 
                 +nk+Rk+++ kl
  CCD22831.1 291 DNKLRKALYGKL 302
                 89****999875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00094
      PglD_N  11 gkvvadiieangeyeiigflDdnkktevegypvlgkaiellkslseeeyevviAIGnnkvR 71 
                 +k   di   n     ig++D++++ +  +y+ ++k++++l++ +eee ++v A G+ + R
  CCD22831.1 605 SKIYFDIFSENS---KIGIVDQDSSASSANYKKVKKESTSLRRRKEEEKKIVAAYGEDQDR 662
                 556666666555...7********99999************99999**********98877 PP

>> DUF1805  Domain of unknown function (DUF1805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00065      0.61      40      62 ..     717     739 ..     715     740 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00065
                 EE-HHHHHTT--TT-BHHHHGGG CS
     DUF1805  40 svteaAeelGikeGmtgkeaLek 62 
                 ++t+ A+++Gik+Gm g+ a+ +
  CCD22831.1 717 ALTKYAKKYGIKNGMFGAMAIML 739
                 57999************999865 PP

>> YvbH_ext  YvbH-like oligomerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.49   4.6e+02       5      33 ..     164     191 ..     161     193 .. 0.83
   2 ?    9.1   0.4    0.0016       1.6      33      53 ..     776     796 ..     764     799 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.49
                 HHHHHHHHHHSS---TT--HHHHHHHHHH CS
    YvbH_ext   5 kSLelAssvlsrarsedgnvaeefkelne 33 
                 +SL +A+++ ++ +++  n+ ++f++l+e
  CCD22831.1 164 TSLAVAQDINGERQQA-INTLSQFEKLAE 191
                 6999999987776666.9********986 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHHHS-S--HH CS
    YvbH_ext  33 efaFnWLedarkkynkKDFge 53 
                 + +++WL+   ++y+ KDF+ 
  CCD22831.1 776 NENYDWLTFFEENYSSKDFSA 796
                 679****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (835 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 5686.64
//
Query:       CCD22832.1  [L=620]
Description: hypothetical protein NDAI_0A06780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-38  132.1   0.1    2.3e-38  131.0   0.1    1.6  1  Inv-AAD          Invertebrate-AID/APOBEC-deaminase
      3e-34  118.4   0.9      7e-34  117.2   0.0    2.0  2  PseudoU_synth_2  RNA pseudouridylate synthase
    5.6e-18   64.7   0.1    1.5e-17   63.3   0.0    1.8  2  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    0.00013   21.8   0.0    0.00028   20.6   0.0    1.6  1  MafB19-deam      MafB19-like deaminase
    0.00042   20.1   0.1    0.00098   18.9   0.1    1.7  1  PQQ              PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> Inv-AAD  Invertebrate-AID/APOBEC-deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.1   6.4e-42   2.3e-38      10     128 ..     501     613 ..     494     614 .. 0.93

  Alignments for each domain:
  == domain 1  score: 131.0 bits;  conditional E-value: 6.4e-42
     Inv-AAD  10 neilatGytleleGnthaeqccliklaekhevaeeklaevlpkntvlYttmepCskRlsGnlpCveRilklkeaiktvyvGvkePekfvaenkgrkkle 108
                  +il++Gy+ el+Gnthaeqc++ k  ek +  e      +p+ tvlYttmepCs RlsGn pCv+Ri+ ++++i+tv+vGv eP++fv++n++ + le
  CCD22832.1 501 VDILSKGYSRELPGNTHAEQCAMEKYFEKVGKRE------IPEGTVLYTTMEPCSFRLSGNEPCVQRIIGMSGKIRTVFVGVLEPDTFVKNNTSLSLLE 593
                 479**********************998877554......8********************************************************** PP

     Inv-AAD 109 eagievvhvegledeileva 128
                 e+gie ++++g e++ +++a
  CCD22832.1 594 EKGIEYIQIPGYEEQCTKIA 613
                 ****************9998 PP

>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.4      0.65   2.3e+03      94     131 ..      26      62 ..      16      89 .. 0.44
   2 !  117.2   0.0   1.9e-37     7e-34       1     159 [.     204     353 ..     204     354 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.65
  PseudoU_synth_2  94 aikkkiskdtekqegarrkaeeldgkkavtylkvlksg 131
                      ++k++is  ++++ + + +++e++ +k++   k l+  
       CCD22832.1  26 TVKTSISG-ANDDNNNKSTEFEKHLEKEIKTAKELQIN 62 
                      44444444.22222233333332222222222222222 PP

  == domain 2  score: 117.2 bits;  conditional E-value: 1.9e-37
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeega 94 
                      d++v++KP+g+pv+p++     + + +++t+  +++ +  +++++RLDk+tsGl+ lAk+++ a+++ +++++r+v+K+Y+a v+g+ + ee  
       CCD22832.1 204 DILVIDKPSGIPVHPTG-----RYRFNSITKILERDLSYTVHPCNRLDKPTSGLMFLAKTPKGADEMGDQLKAREVKKEYIARVVGEFPLEELV 292
                      579**************.....************************************************************************ PP

  PseudoU_synth_2  95 ikkkiskd.tekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                      + k++ +   + + +a +++e+++++ a t++k ++++     +++slv++++ tGr hQiRvhl+
       CCD22832.1 293 VVKPLRTIdPKVALNAVCTMEDDGARHAKTVFKRISYD-----GQTSLVKCKPLTGRQHQIRVHLQ 353
                      ****99953445568899********************.....*********************97 PP

>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.1   7.5e+03      70      83 ..     230     243 ..     225     244 .. 0.76
   2 !   63.3   0.0   4.2e-21   1.5e-17       3      99 ..     469     574 ..     467     576 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.1
                      ETTEEEEEEE--BH CS
  dCMP_cyt_deam_1  70 legatlyvtlePCs 83 
                      + +  l  t+ PC+
       CCD22832.1 230 ILERDLSYTVHPCN 243
                      556778889****8 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 4.2e-21
                      HHHHHHHHHHHHHHHHH.TTTSCSEEEEEEETTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.T.SSCETTEEEEEEE--BHH.......HH CS
  dCMP_cyt_deam_1   3 kdekllelalkaakeaq.kcsnfkVGavivkngeiistgyngepaggsktiHAEvnAilkaakn.g.gsklegatlyvtlePCsm.......Ca 86 
                       ++k++ela+++ak++  + + f+VGa++v+   i+s+gy++e +g++   HAE++A+ k+ ++ g ++  eg++ly+t+ePCs        C 
       CCD22832.1 469 PHRKYMELAIEEAKKCApTTTAFSVGAALVNGVDILSKGYSRELPGNT---HAEQCAMEKYFEKvGkREIPEGTVLYTTMEPCSFrlsgnepCV 559
                      5899***************************99***************...*************88665559************7799****** PP

                      HHHHHH..T-SEEEE CS
  dCMP_cyt_deam_1  87 kaiiqs..gikkvvv 99 
                      + ii +  +i++v+v
       CCD22832.1 560 QRIIGMsgKIRTVFV 574
                      *99987433777766 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   7.9e-08   0.00028       3     106 ..     470     581 ..     468     614 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 7.9e-08
  MafB19-deam   3 kekafrkalaevekatkik.edkigavivkdkkviargsnekelnakataHaEiaalqqAakklkskr.lddatlyvtlepCd.......mCagaiv. 90 
                  + k+++ a++e++k ++ +    +ga  v++  ++ +g+ ++        HaE  a+++  +k+++ + +++++ly+t epC+       +C   i+ 
   CCD22832.1 470 HRKYMELAIEEAKKCAPTTtAFSVGAALVNGVDILSKGYSRE---LPGNTHAEQCAMEKYFEKVGKREiPEGTVLYTTMEPCSfrlsgnePCVQRIIg 564
                  78999*******998876615689***************944...36778************9887653899**********7333333357776664 PP

  MafB19-deam  91 .qaglkklvygagnpks 106
                    ++++++  g+ +p++
   CCD22832.1 565 mSGKIRTVFVGVLEPDT 581
                  45677777777666665 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   2.7e-07   0.00098      15      35 ..     447     467 ..     445     470 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.7e-07
                 EETTTCCEEEEEESSSCGSSE CS
         PQQ  15 lDadTGkvlWrfktggpvlsl 35 
                 lD +TGk +W+++t+ p+++l
  CCD22832.1 447 LDENTGKRKWSYRTKFPDWAL 467
                 9******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1272  (0.0709465); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4098.50
//
Query:       CCD22833.1  [L=312]
Description: hypothetical protein NDAI_0A06790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-38  132.2   0.1    4.4e-38  131.8   0.1    1.2  1  Metallophos      Calcineurin-like phosphoesterase
    0.00079   19.8   0.3     0.0017   18.7   0.3    1.5  1  STPPase_N        Serine-threonine protein phosphatase N-termi
  ------ inclusion threshold ------
      0.091   12.4   0.0       0.14   11.8   0.0    1.2  1  Glyco_hydro_65N  Glycosyl hydrolase family 65, N-terminal dom


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.8   0.1   7.4e-42   4.4e-38       2     201 ..      48     240 ..      47     243 .. 0.92

  Alignments for each domain:
  == domain 1  score: 131.8 bits;  conditional E-value: 7.4e-42
                  EEEEEESBTBTTCCTHHHHHHHHHHHH...HHHTTESEEEEESTSSSSS..HHHHHHHHHHHHHHHHTSEEEEEC-TTS........CHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl...lreekpdlvllaGDlvdrg..dlekellellaalvkypipvylllGNHe........gfeeellnkyg 86 
                  +++v+gD+H     gq++dll+l++     +++  ++++l  GD+vdrg  +le+ +  l++ +vkyp ++ l++GNHe        gf+ee+lnkyg
   CCD22833.1  48 PVTVCGDIH-----GQFHDLLELFRTSggfPDD-INYIFL--GDYVDRGyySLET-FTLLMCLKVKYPSKITLVRGNHEsrqitqvyGFYEECLNKYG 136
                  799******.....**********777442444.678888..*******888888.77779************************************* PP

                  HHHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCC CS
  Metallophos  87 ylgifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfg 180
                  +      +w+++++vf++l la++++g  k+l++hGg spe+   ld+++ l++ +e+p++g   d++++d        ++ v ++   +rg+g+lfg
   CCD22833.1 137 S----TTVWKYCCQVFDFLTLAAIIDG--KILCVHGGlSPEI-RMLDQIRVLSRAQEVPHEGgfsDLLWSD--------PDNVEAWQVSPRGAGWLFG 219
                  9....779*******************..********98888.****************************........888999999999******* PP

                  HHHHHHHHHHTTESEEEEESS CS
  Metallophos 181 dealedllkkygvdlvisGHt 201
                  +++++++   +g+ l+ ++H+
   CCD22833.1 220 SKVAREFNHVNGLNLIARAHQ 240
                  ********************7 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.3   2.9e-07    0.0017      18      42 ..      15      40 ..      10      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.9e-07
   STPPase_N 18 kkvq.LseaEIrqlCakareiFLsQP 42
                kk+q L+e+E++qlC +++e+++++ 
  CCD22833.1 15 KKCQaLTENEMKQLCEMVKELLMEES 40
                67888******************986 PP

>> Glyco_hydro_65N  Glycosyl hydrolase family 65, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.3e-05      0.14      26      84 ..     112     165 ..     111     182 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
                      E----TTTT--.-EEETT-EE-T........TSSS-EE----EEEEEEEEETTEE--GG CS
  Glyco_hydro_65N  26 tRgafeeeysdpgtyiaGvYdreiseeanGypeeneelvnlpdwlglrlrvdgeeldld 84 
                      +Rg++e     + t + G+Y++    +++G +++++ ++++ d+l+l   +dg+ l + 
       CCD22833.1 112 VRGNHES--R-QITQVYGFYEEC--LNKYGSTTVWKYCCQVFDFLTLAAIIDGKILCVH 165
                      6999999..4.59*******888..69**************************777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2345.57
//
Query:       CCD22834.1  [L=239]
Description: hypothetical protein NDAI_0A06800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-49  167.5   1.4    3.1e-49  167.2   1.4    1.0  1  PRP38     PRP38 family
  ------ inclusion threshold ------
      0.095   13.1   0.7       0.28   11.6   0.0    2.1  3  DUF3143   Protein of unknown function (DUF3143)


Domain annotation for each model (and alignments):
>> PRP38  PRP38 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.2   1.4   3.5e-53   3.1e-49       1     169 [.      16     218 ..      16     222 .. 0.92

  Alignments for each domain:
  == domain 1  score: 167.2 bits;  conditional E-value: 3.5e-53
       PRP38   1 kqlngqnptlliekivrerIleseYykenlfglka....laelvdeiveklkhieg..............lvlggtekpstflClllKLlqlkptkkqi 81 
                 kqln+++++l+i++i+r++I++s+Yyk+nl++ ++    + +l+++iv++++++++              +++      ++f+Cll+K+++lkpt +qi
  CCD22834.1  16 KQLNNSSVSLVIPRITRDKIHNSIYYKVNLTSQSLrgntMVQLIQVIVRDFGKLKSqshshssdtmvvrnHLV----GGTEFKCLLMKIIELKPTIEQI 110
                 689****************************99999999*****************77777777764444444....5566****************** PP

       PRP38  82 eelln.....nedskYiralgllYlRlvle........pkelykllepllnDyrklkrrekdg.......evdpkgvklitidelvddLltkdricgti 160
                 + ll+     ++d+kYi++l+++Y+R+++         ++++ ++++++ln+y+klk++++d+       ++++++v++i++de+vd+Lltkd+i+g++
  CCD22834.1 111 WILLEdhddtEFDNKYITVLIITYIRIQYFfigkndslARKFQDIFQKCLNNYTKLKCFQLDAdcwspslSLSEESVRIIYMDEVVDWLLTKDNIWGIP 209
                 ***************************************************************999997666666************************ PP

       PRP38 161 Lprlpkrak 169
                 L+++++ a+
  CCD22834.1 210 LGKCQWVAE 218
                 ******775 PP

>> DUF3143  Protein of unknown function (DUF3143)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.68   6.1e+03      26      47 ..     130     150 ..     127     153 .. 0.56
   2 ?   11.6   0.0   3.1e-05      0.28       3      38 ..     159     194 ..     157     205 .. 0.89
   3 ?   -2.3   0.1      0.69   6.1e+03      16      24 ..     211     219 ..     198     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.68
     DUF3143  26 LdieeltVrYlkageggkdiqr 47 
                 L i+ ++++Y+  g++  ++ r
  CCD22834.1 130 LIITYIRIQYFFIGKN-DSLAR 150
                 4456677777666544.34445 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 3.1e-05
     DUF3143   3 ceqdeeelhcWalerpdWsAeilLdieeltVrYlka 38 
                 c  + ++l+c +l+   Ws  ++L +e++++ Y+++
  CCD22834.1 159 CLNNYTKLKCFQLDADCWSPSLSLSEESVRIIYMDE 194
                 6677899**************************865 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.69
     DUF3143  16 erpdWsAei 24 
                  + +W Aei
  CCD22834.1 211 GKCQWVAEI 219
                 467899998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.20s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1980.69
//
Query:       CCD22835.1  [L=167]
Description: hypothetical protein NDAI_0A06810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-28   99.3   0.1    2.5e-28   99.0   0.1    1.1  1  Mitoc_mL59  Mitochondrial ribosomal protein mL59


Domain annotation for each model (and alignments):
>> Mitoc_mL59  Mitochondrial ribosomal protein mL59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.1   1.4e-32   2.5e-28       2     128 ..      16     143 ..      15     144 .. 0.92

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 1.4e-32
  Mitoc_mL59   2 alkrffareppsalsasaaka..arlpnPflptknpktgrWapPkySlRrqaeLvKaAkksgveellPpgpKstkfkeeraverglrvkgtagkkkmfk 98 
                 +l++ff+++pps + a+++++  +   nPfl ++np +g++ +PkySlRr+++++K+A+++gv++llPp p s+ f +e+  ++ ++ k   +   + k
  CCD22835.1  16 KLRTFFEKYPPSIKYAKSSTSikSISANPFLRNRNPINGKFYEPKYSLRRMSDIYKLAHRYGVQDLLPPIPSSKLFFQEKYDKKIAENKFM-KGVLFPK 113
                 699********9877777666884467*****************************************************99999999999.558899* PP

  Mitoc_mL59  99 GhkwERtkeerlekrrkaledmpkrirewk 128
                 Ghk+E + e++l++r++ +++++k+i++ k
  CCD22835.1 114 GHKYELALESKLKAREEGIKNADKMIADVK 143
                 **************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.30s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1137.18
//
Query:       CCD22836.1  [L=196]
Description: hypothetical protein NDAI_0A06820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-37  128.3   1.1    1.9e-37  127.8   1.1    1.2  1  Prefoldin       Prefoldin subunit
    0.00075   19.2   1.0      0.041   13.8   0.0    3.0  2  Pox_A_type_inc  Viral A-type inclusion protein repeat
      0.002   18.0   3.3     0.0046   16.9   0.2    2.3  2  Prefoldin_2     Prefoldin subunit
  ------ inclusion threshold ------
       0.23   11.5   1.2        1.3    9.1   0.1    2.2  2  DUF1664         Protein of unknown function (DUF1664)
       0.32   11.9   4.1         10    7.1   0.2    2.2  2  PRKG1_interact  cGMP-dependent protein kinase interacting dom
        1.1    8.4   5.0          2    7.6   0.9    2.1  2  TMPIT           TMPIT-like protein
        8.6    6.6   7.1        7.4    6.9   0.4    2.8  3  XhlA            Haemolysin XhlA


Domain annotation for each model (and alignments):
>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8   1.1   7.3e-41   1.9e-37       1     120 []      48     177 ..      48     177 .. 0.99

  Alignments for each domain:
  == domain 1  score: 127.8 bits;  conditional E-value: 7.3e-41
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT..........-TT-EEEEEEETTEEEEEE-.-STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHH CS
   Prefoldin   1 lkeeleslqaelaqlkeaieelektletlktlkk.........edegkevlvplgaglyvkaev.kdtdkvlvdlGagyyveksleeAiellkkkleel 89 
                 +k+++es+ ++++qlk +i++le+tl+++++lk           de+ +v ++l+++ly+kae+ k+ d v+++lGa++++e++++eAiell+kkl+++
  CCD22836.1  48 YKFMQESKLTTVKQLKIRIPDLENTLKICNNLKRqsenndddgDDEPLQVNYQLNDTLYTKAEIsKIQDTVCLWLGADVMLEYPIDEAIELLNKKLNDA 146
                 89****************************************99******************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  90 ekqlekleeeleklkdqittleanlaqlyqk 120
                 +++l++++e++e+l+++itt+e+n+a+ly++
  CCD22836.1 147 KRNLDTCTEDVEFLRENITTMEVNCARLYNW 177
                 *****************************98 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.6e-05     0.041       3      20 ..      59      76 ..      57      78 .. 0.90
   2 ?    2.9   0.4     0.043   1.1e+02      13      23 .]     139     149 ..     136     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
  Pox_A_type_inc  3 msrlRsRIsDLErqLseC 20
                    + +l+ RI DLE+ L +C
      CCD22836.1 59 VKQLKIRIPDLENTLKIC 76
                    679*************** PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.043
  Pox_A_type_inc  13 LErqLseCrrN 23 
                     L ++L++++rN
      CCD22836.1 139 LNKKLNDAKRN 149
                     67899999987 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.3      0.14   3.6e+02      56      87 ..      51      82 ..      44      89 .. 0.64
   2 !   16.9   0.2   1.8e-06    0.0046      25      98 ..      98     170 ..      91     176 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.14
                 EEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2 56 vkqdkeevkeeLeerketlekeiktlekqlek 87
                 ++++k ++ ++L+ r+ +le  +k +++ +++
   CCD22836.1 51 MQESKLTTVKQLKIRIPDLENTLKICNNLKRQ 82
                 55566666666666666666666666555544 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.8e-06
                  HHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  25 etqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkee 98 
                  + ql++   ++ e++++ ++  +  l  dv+++ + +e++e L++++++++ +++t+++  e l+++++ ++ +
   CCD22836.1  98 NYQLNDTLYTKAEISKIQDT-VCLWLGADVMLEYPIDEAIELLNKKLNDAKRNLDTCTEDVEFLRENITTMEVN 170
                  56777777899999999988.9999999****************************************999876 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.12   3.1e+02      58      86 ..      56      84 ..      37     121 .. 0.76
   2 ?    9.1   0.1   0.00052       1.3      80     119 ..     134     173 ..     107     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.12
     DUF1664 58 aatkrhLssridrvdkkldeqkeiskeik 86
                 +t ++L+ ri  ++++l+ +++++++ +
  CCD22836.1 56 LTTVKQLKIRIPDLENTLKICNNLKRQSE 84
                45556788888888888887777776655 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00052
     DUF1664  80 eiskeikeevtevredlseigedvesvkeavegleskler 119
                 e+++ +++++++++++l++  edve ++e ++++e + +r
  CCD22836.1 134 EAIELLNKKLNDAKRNLDTCTEDVEFLRENITTMEVNCAR 173
                 5566777888888888888888888888888888876655 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2    0.0039        10      39      84 ..      39      84 ..      22      91 .. 0.80
   2 ?    6.2   0.4    0.0077        20      14      66 ..     137     188 ..     131     196 .] 0.50

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0039
  PRKG1_interact 39 qqrqesvskrssllelekrerrslerkiseleeelkeleeLraenq 84
                    ++ qe++sk + + e + +  ++l+ +i +le+ lk  ++L+++++
      CCD22836.1 39 NKFQERLSKYKFMQESKLTTVKQLKIRIPDLENTLKICNNLKRQSE 84
                    44567888999999999999999999999************97765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0077
  PRKG1_interact  14 erLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerki 66 
                     e L ++L++++++l+++++ +e l+++  + ++ + + l   + err++e++ 
      CCD22836.1 137 ELLNKKLNDAKRNLDTCTEDVEFLRENI-TTMEVNCARLYNWDVERRQNEKET 188
                     5567777777777777777777776442.222222222222333333333332 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.9   0.00078         2       3      64 ..      23      84 ..      21     117 .. 0.82
   2 ?    2.9   0.2     0.021        54      15      65 ..     133     188 ..     129     195 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00078
       TMPIT  3 eweelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeee 64
                ++e++ k+ +++e  +++++++l +++ +q++  +++k+ k r+ +l+++lk +++ ++++e
  CCD22836.1 23 QVEDFIKDPQDFELCFNKFQERLSKYKFMQESKLTTVKQLKIRIPDLENTLKICNNLKRQSE 84
                6788999999999***************************************9998754222 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.021
       TMPIT  15 eetakeykqkleelsklqskcskeikkqkkrlkelksslkklkks.vk....eeee 65 
                  e+ + +++kl++ ++  ++c+++++  +++++ ++ +  +l +  v+    e+e 
  CCD22836.1 133 DEAIELLNKKLNDAKRNLDTCTEDVEFLRENITTMEVNCARLYNWdVErrqnEKET 188
                 56667778888888888888888888888888888877777655422221213333 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.049   1.3e+02      14      49 ..      39      74 ..      35      74 .. 0.89
   2 ?    6.9   0.4    0.0029       7.4      11      45 ..     134     168 ..     131     174 .. 0.64
   3 ?   -2.1   0.2       1.8   4.7e+03      23      34 ..     179     190 ..     177     195 .. 0.56

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.049
        XhlA 14 dnleervdkleekaaeaeekiknleedlkklesnqk 49
                ++ +er++k +  ++  ++ +k+l  ++ +le+++k
  CCD22836.1 39 NKFQERLSKYKFMQESKLTTVKQLKIRIPDLENTLK 74
                66788999999999999999***********99987 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0029
        XhlA  11 tkldnleervdkleekaaeaeekiknleedlkkle 45 
                 + ++ l++++++ +++ ++  e ++ l e++  +e
  CCD22836.1 134 EAIELLNKKLNDAKRNLDTCTEDVEFLRENITTME 168
                 55666666666666666666666666666666665 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.8
        XhlA  23 leekaaeaeeki 34 
                 +e++++e e+++
  CCD22836.1 179 VERRQNEKETEA 190
                 556666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1201  (0.0669864); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1408.74
//
Query:       CCD22837.1  [L=372]
Description: hypothetical protein NDAI_0A06830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-81  271.6  18.5    7.1e-81  271.3  18.5    1.1  1  SUN       Beta-glucosidase (SUN family)


Domain annotation for each model (and alignments):
>> SUN  Beta-glucosidase (SUN family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.3  18.5     4e-85   7.1e-81       3     245 .]      59     314 ..      57     314 .. 0.95

  Alignments for each domain:
  == domain 1  score: 271.3 bits;  conditional E-value: 4e-85
         SUN   3 kikCsefpsdeglvavdalgl.gGwagiqdvkgesqeCkegsyCsyaCppGylktqw.psa..qgatgssvGGLyCnkdGklektnkdskklCekgagk 97 
                   +C+ fp+ +g+vav+++g+ +Gwa+++d     qeC+ gs+C+yaC+pG+l+ qw ps   ++++gs++GGLyC+++G+l+k n+d k++C++g+g+
  CCD22837.1  59 GGTCA-FPNYDGMVAVQKSGKnAGWAMHND-----QECSYGSWCPYACEPGKLMGQWdPSVttYSYPGSQNGGLYCDSNGNLQKMNSD-KDYCYDGTGT 150
                 568*9.*************999********.....89********************988778*************************.********** PP

         SUN  98 vkvknklsk.svavCrTdyPGtEamlipteveagssaelavpdedtyykwkgkktsaqYYvNkaGvsvedaCvWgseskpvGNwaplvlGagkdedgkt 195
                 v+++n++s  +v++C+T +PG+E+mlipt v++gss++lavp+ d+   w+  +t+a+YY+N++Gv v+daC+Wgs+++p+GNw+p+v+Ga++d++g+t
  CCD22837.1 151 VSAVNSCSGgDVSFCQTILPGNEEMLIPTLVSKGSSKTLAVPGPDY---WA--STAAHYYINPPGVGVDDACQWGSTANPCGNWSPYVAGANTDSNGNT 244
                 *****996449***********************************...**..********************************************** PP

         SUN 196 ylsifqNp........tskeklnfnvkieae.egdsvsgkCkye..........sgklskg.ggadgCtv 245
                 +++i++Np        ++++k++f++ki+++ ++++ +++C+++          s+++s+g gg ++C+v
  CCD22837.1 245 FVKIGWNPiyletscpFKDKKPTFGIKITCDdKSQCDGLDCAIDpsvndingvsSSQSSSGaGGGNFCVV 314
                 ******************************98899***************99986666666688****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       574  (0.0320152); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2630.63
//
Query:       CCD22838.1  [L=178]
Description: hypothetical protein NDAI_0A06840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-29  102.0   0.0    2.5e-29  101.7   0.0    1.1  1  Haem_degrading  Haem-degrading


Domain annotation for each model (and alignments):
>> Haem_degrading  Haem-degrading
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0   1.4e-33   2.5e-29       1     117 [.      33     162 ..      33     164 .. 0.94

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 1.4e-33
  Haem_degrading   1 ltledAkelgaaarakarek..gkpvviaivdaggqllffarmd.gaspdnedwaerKantaarfgkstaalgeklk...........eedyagr 81 
                     ++++dA+ lg+ +r+++r++  gk+v+i+i+++++++lf a ++ g+s+dn+ w++rK+ t+ rf +st  +g+k             +++ya  
      CCD22838.1  33 FDADDAFNLGCLVRDTIRKQypGKAVSIDITLPNKHCLFRATTAnGTSFDNDMWIKRKQTTVFRFAHSTFFMGCKKGdktpedrffvdAKEYA-- 125
                     899****************************************99***************************999889999999999988999.. PP

  Haem_degrading  82 vilgGGvpirvkg..gvvGaigvSGlkqeeDhqvavaa 117
                      ++gG+vpi+      ++++++vSGlkqeeDh +a  a
      CCD22838.1 126 -FHGGAVPIFCSSlgYPIACLTVSGLKQEEDHLIATMA 162
                     .********666555*******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1332.04
//
Query:       CCD22839.1  [L=492]
Description: hypothetical protein NDAI_0A06850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.20s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3841.91
//
Query:       CCD22840.1  [L=706]
Description: hypothetical protein NDAI_0A06860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.9e-45  154.4   6.9    2.9e-43  148.3   6.9    2.4  1  NatB_MDM20  N-acetyltransferase B complex (NatB) non catalyti
     0.0095   16.4   0.4      0.071   13.6   0.0    2.8  3  DUF1801     Domain of unknown function (DU1801)
  ------ inclusion threshold ------
      0.011   15.8   1.1        6.1    7.0   0.1    3.6  3  FKBP26_C    FKBP26_C-terminal


Domain annotation for each model (and alignments):
>> NatB_MDM20  N-acetyltransferase B complex (NatB) non catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.3   6.9   4.9e-47   2.9e-43       5     382 .]     182     502 ..     161     502 .. 0.86

  Alignments for each domain:
  == domain 1  score: 148.3 bits;  conditional E-value: 4.9e-47
  NatB_MDM20   5 klyldsafklkekkesleevqkfieelikkeeakspksRnpyLArLelikrlrkrskkaeeektslsglvelileYfekfgsKlccfeDLkkYleeLsk 103
                 k++l++ ++l    ++  e+ ++i +++         sRn +L rLe    ++++ +             +++++Y ek ++K+c+  D++ Y +++ +
  CCD22840.1 182 KSLLKAGKEL---GRTKIELFEIIDSFV-------GDSRNSRLGRLEGDLIFNDEIT------------EASLFHYTEKLHNKPCFAVDISYYKTKIPD 258
                 3444444444...347778888888887.......568********98885554444............389************************966 PP

  NatB_MDM20 104 eerkeflekvsslskseseseeekkekklrrlinalklerclgeheklseeekeelvtellaiYraslrlgaelletesqpsddlallaahalldlsek 202
                 e  k++++  +               ++l++  n+  l+ +                 + ++ + +++++ a++++t++    +++l  ++   + ++k
  CCD22840.1 259 ELLKKVMSNFD---------------SDLIHDANVFALSVHD---------------LDSVQYFSKHKETLANKSKTDYSKCSTFILDIVKG--RIFGK 325
                 66666666666...............789**********555...............466788999999999***************99997..56777 PP

  NatB_MDM20 203 svdstlliqaillLeflltksphNfqlkLlLvrlYlllGagslalklyskLdiKqiQlDtlghllftrlstlgpfska...lslleqalrfYesaeket 298
                 +++ + l+ ++++Le+  +++p+Nf   ++L+ +Y+ lG+  la+++y++L+iK++Q D+l +++++r+s+l p +++    +++e+  ++Y+++ +++
  CCD22840.1 326 NPTLNDLVLSLTILENYQQQDPYNFDTCVWLIAIYIYLGLIPLAYSHYENLKIKNVQCDSLDYMIYSRFSSLFPAKQHdllNKTFEEHNKLYTNSLTNL 424
                 7999************************************************************************99999****************** PP

  NatB_MDM20 299 pesiakayekgsYskieefiefqerLknSlqramvaleerrlqrllggqyddlaekleaelkedeaepaedridwsklsDnrdf 382
                 p++i+ a+e+ sYski ++++f+e+L++Sl r+m +++  +l rl +   d+ a+ l+ + +++e    ++ +  ++ sDnrd+
  CCD22840.1 425 PQFIKIAFERKSYSKIIGMLQFREQLEHSLVRWMKTCDLAQLRRLSN---DKRAQLLKIMHQGWET---RKLTGATEWSDNRDW 502
                 ***********************************************...6777766677777744...566778899999997 PP

>> DUF1801  Domain of unknown function (DU1801)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.96   5.7e+03      11      23 ..     131     143 ..     124     187 .. 0.59
   2 ?   -2.7   0.0       1.5     9e+03      46      72 ..     444     470 ..     396     479 .. 0.61
   3 !   13.6   0.0   1.2e-05     0.071       2      33 ..     587     634 ..     586     678 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.96
                 HHHHHSTTSEEEE CS
     DUF1801  11 lilealpeveesi 23 
                 li  ++pe+++s+
  CCD22840.1 131 LINLIIPELSKSV 143
                 4444555555554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
                 HHTHHHHHH.-EEESSEEEEETTS--- CS
     DUF1801  46 edpkgllegkkgkgkrcirfkslddid 72 
                  ++ ++le +  ++++++++ +l  + 
  CCD22840.1 444 LQFREQLEHSLVRWMKTCDLAQLRRLS 470
                 355556655555566666665555555 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHHHHHHSTTSEEEEETTEEEEEE................- CS
     DUF1801   2 reelerLrklilealpeveesikwgmpfYty................a 33 
                 +++ ++Lrkl++e++  ++ +  w+m +Y+                 +
  CCD22840.1 587 KNDGKELRKLLEEVATTLSDTTAWKMTHYYLiqlstlktldnfkrikD 634
                 67899************************9877766666655554440 PP

>> FKBP26_C  FKBP26_C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1     0.001       6.1       1      22 [.     124     144 ..     124     154 .. 0.81
   2 ?    1.2   0.0     0.065   3.9e+02      35      59 ..     240     264 ..     236     269 .. 0.84
   3 ?    3.6   0.1     0.012        74       3      18 ..     635     650 ..     633     660 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHH-TT--..--E CS
    FKBP26_C   1 dkekikelIkryiPnidlekfk 22 
                 dkek++elI++ iP+++ + ++
  CCD22840.1 124 DKEKVEELINLIIPELS-KSVD 144
                 79*************98.5555 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.065
                 -TTGGGSTTHHHHHHHHHHHHHHH- CS
    FKBP26_C  35 peeakFieniqlaklrIAkdilkri 59 
                  ++  F+ +i + k +I +++lk +
  CCD22840.1 240 HNKPCFAVDISYYKTKIPDELLKKV 264
                 5667899*************99864 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.012
                 HHHHHHHHHH-TT--. CS
    FKBP26_C   3 ekikelIkryiPnidl 18 
                  kik+lIk +i+++ +
  CCD22840.1 635 TKIKQLIKENIQRLRT 650
                 59***********983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 5285.97
//
Query:       CCD22841.1  [L=502]
Description: hypothetical protein NDAI_0A06870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.2e-123  413.7   0.0   1.4e-123  413.4   0.0    1.0  1  Peptidase_S10  Serine carboxypeptidase
  ------ inclusion threshold ------
       0.13   12.1   0.6        0.2   11.5   0.6    1.2  1  Mob_Pre        Plasmid recombination enzyme
       0.46   11.1   0.0       0.46   11.1   0.0    2.1  2  Crisp          Crisp


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.4   0.0  2.3e-127  1.4e-123       8     419 .]      89     492 ..      82     492 .. 0.92

  Alignments for each domain:
  == domain 1  score: 413.4 bits;  conditional E-value: 2.3e-127
                    SSEEEEEEEECSTTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT-EET CS
  Peptidase_S10   8 nfkqysGYldveeeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGFSysn 103
                    +++q sGYld +  ++k++FYwf+es+++p++dpl+lWLnGGPGCsS++Gll+ElGP ++    ++k+ +npysWn++a+v+fl+qP+GvGFSy +
     CCD22841.1  89 SVNQWSGYLDYK--DSKHFFYWFFESRNDPKNDPLILWLNGGPGCSSFTGLLFELGPSSIG--PDMKPIHNPYSWNNNASVIFLEQPLGVGFSYGD 180
                    6799********..89*********************************************..559****************************** PP

                    TSSGS--SHHHHHHHHHHHHHHHHHHSTCGTTSEEEEEEETTHHHHHHHHHHHHHTHCCH--SSTSEEEEEEEESE-SBHHHHHCCHHH....HHH CS
  Peptidase_S10 104 tksdvktddeevaedlyefLkkffekfpeyksrdfyitGESYaGhyvPalakeilkknkkekkkkinLkGlligNglideaeqvnsyve....fay 195
                    +k +   +++ +++d+y fL+ ff+kfp+++  df+i+GESYaGhy+P++a+ei+++  +    ++nL++++igNg++d+ +q+++y +       
     CCD22841.1 181 EKVT---STNVAGKDVYIFLELFFKKFPHLRDVDFHIAGESYAGHYIPQIAHEIVQNPLR----TFNLSSIMIGNGITDPLIQSDYYRPmacgEGG 269
                    *998...99**********************************************99977....8************************5555556 PP

                    HTTSSHHHHHHHHHHHHEETHHHHHHHHHHHHHHHHHHHHH..........HHHHCH....CEETTETTSEETTSSEEHHHCTTCCCCTTTTTCHH CS
  Peptidase_S10 196 ehgliseeeyeslkkacekkeeleqesekcanllekaskva..........vekenk....glnvynileeccklkaelkksstdaqggedpydes 277
                    +++l+s++e++++   +   +++++ ++ c+ + +++ +v+                    gln+y+i+ +c          +++++gg ++   +
     CCD22841.1 270 HKSLLSQKECDDMVGPT---NRCHRLNQVCYLTESNLPCVVsssycetalmR----PfektGLNPYDIRGPC----------EDNSKGGLCYNGIK 348
                    78899999999887766...99***************998776666655442....04455***********..........78899********* PP

                    HHHHHHTSHHHHHHTT--TTSSS--SB-HHH...HHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEE CS
  Peptidase_S10 278 yvekylnkkeVrkalhvnasvkkweecndsv...feqleddisksveeileellesglrvliynGdvDlicnvlgteawikklelsgkkefrpwev 370
                    yveky+n +eV++ l+  + v++++ cn++v   f + + d sk+++ ++ ell+ +++vliy+Gd+D+icn+lg++aw+k+le++ ++ ++ +  
     CCD22841.1 349 YVEKYMNFPEVQEVLG--SDVDHYSGCNEDVftgFFF-TGDGSKPFQGFVGELLDMDIPVLIYAGDKDFICNWLGNQAWTKELEWKYDTFYELQPL 441
                    ****************..889**********885444.56677*******************************************9998887777 PP

                    EE..TTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHHHHHTT CS
  Peptidase_S10 371 sp..kkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqllerfisg 419
                    +p  ++e+ ++ G+vk+y+ ltfl+v+++GHmvP+d+pe++l++l+ ++sg
     CCD22841.1 442 KPwiHSETREELGEVKNYGPLTFLRVYESGHMVPYDQPEASLEMLNVWLSG 492
                    776678999*********99****************************975 PP

>> Mob_Pre  Plasmid recombination enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   3.3e-05       0.2      33     105 ..      39     107 ..      30     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.3e-05
                 -TTS-GGGGGG-EESS--TTS-HHHHHHHHHHHH-SSSS---TT---EEEEEEEE-HHHHHTS-HHHHHHHHH CS
     Mob_Pre  33 nkdideerselnydlvnakkkrykekikeyikenqvskrklRkdavlvieilitaskeffekltkeeakeffe 105
                 n++i +++ +  + ++ ++k++++++i+++i++ +    +lR ++v    ++i++ ++++  l++++ k+ff 
  CCD22841.1  39 NRNIFKNEVQSIIPKNWRFKNDFETTIESTIDQDY----SLRVRSVDPAKLQIDSVNQWSGYLDYKDSKHFFY 107
                 67777777777777777777789999999999999....9*******************************96 PP

>> Crisp  Crisp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.9       1.9   1.2e+04       7      33 ..     278     303 ..     275     317 .. 0.54
   2 ?   11.1   0.0   7.6e-05      0.46       3      34 ..     333     364 ..     332     379 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.9
                 --SSSS.-S---S---SSTTHHHHHHHS CS
       Crisp   7 nCedkL.CtnpCeyadkysnCkelkktl 33 
                 +C+d    tn C+  +++  C   +++l
  CCD22841.1 278 ECDDMVgPTNRCHRLNQV--CYLTESNL 303
                 454443136666665554..44444444 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.6e-05
                 S-TT--SSSS-S---S---SSTTHHHHHHHS- CS
       Crisp   3 dCpnnCedkLCtnpCeyadkysnCkelkktlg 34 
                  C++n + +LC n  +y++ky n  e+++ lg
  CCD22841.1 333 PCEDNSKGGLCYNGIKYVEKYMNFPEVQEVLG 364
                 5999999****************999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 4075.14
//
Query:       CCD22842.1  [L=3116]
Description: hypothetical protein NDAI_0A06880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-22   78.0   4.6    2.2e-14   53.7   0.2    3.3  3  RasGAP    GTPase-activator protein for Ras-like GTPase


Domain annotation for each model (and alignments):
>> RasGAP  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       0.3   5.3e+03     160     199 ..     307     354 ..     304     362 .. 0.72
   2 !   25.1   0.0     7e-10   1.3e-05       2      65 ..    1762    1823 ..    1761    1829 .. 0.92
   3 !   53.7   0.2   1.2e-18   2.2e-14     105     208 .]    1831    1929 ..    1823    1929 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.3
      RasGAP 160 nligsflflrfliPai....vn.Pklfglv...dkqiseeqrrnLtli 199
                 + i++ l l+++  ai    ++ P+++ ++    +  ++++++ L +i
  CCD22842.1 307 KTIFHSLLLYYVSKAImfwiMArPHQYIQLiydLHDRRKRHEDSLRQI 354
                 568888999999999977764459999777776344477777777766 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 7e-10
      RasGAP    2 iseliklElessenpndllrsnsvvsklleeytkrpegqeyLkkilkpllqkilekedlnlelD 65  
                  +++lik E+++++ + d+lr n+v ++ l  y +  +g eyL k l p+lq+++ ++  ++e+ 
  CCD22842.1 1762 VTQLIKDEIKKASRYADVLRRNTVATRALSLYSRT-KGSEYLIKTLRPILQELV-DNGDFFEVE 1823
                  689********************************.*****************9.777777775 PP

  == domain 3  score: 53.7 bits;  conditional E-value: 1.2e-18
      RasGAP  105 mleknldkLkelvneildsIfksleqlPvgiRiickqirekvkekfpdaseeeilnligsflflrfliPaivnPklfglvdkqiseeqrrnLtliaK 201 
                   ++ ++d + ++ ++++dsI++sl ++P ++ +ic+ i ++vk kfpd+     + ++gsf+flrfl Pa+v+P+  +++  +++ + +r  +++aK
  CCD22842.1 1831 NMNYQVDLFAKYLQKLVDSITNSLPDFPPELLMICQTIFNSVKDKFPDYA----HVAVGSFVFLRFLGPALVSPDSENILIITHT-RDKRPFITLAK 1922
                  5778889999************************************9776....9************************944433.45688889*** PP

      RasGAP  202 llqnlan 208 
                  ++qn+an
  CCD22842.1 1923 VIQNIAN 1929
                  *****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.35u 0.32s 00:00:01.67 Elapsed: 00:00:00.52
# Mc/sec: 18058.88
//
Query:       CCD22843.1  [L=361]
Description: hypothetical protein NDAI_0A06890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-77  260.5   0.0    2.1e-77  259.9   0.0    1.3  1  Bmt2             25S rRNA (adenine(2142)-N(1))-methyltransfer
    0.00096   19.0   0.0     0.0017   18.2   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.057   13.2   0.5       0.12   12.2   0.5    1.5  1  DUF3346          Protein of unknown function (DUF3346)
      0.064   14.0   0.0       0.14   12.9   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
       0.18   12.4   0.0       0.33   11.6   0.0    1.5  1  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Bmt2  25S rRNA (adenine(2142)-N(1))-methyltransferase, Bmt2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.9   0.0     6e-81   2.1e-77       2     220 .]     135     358 ..     134     358 .. 0.94

  Alignments for each domain:
  == domain 1  score: 259.9 bits;  conditional E-value: 6e-81
        Bmt2   2 eieaeiealGGleaYQlaSklgqskerggdsskvlvewlkekleelkleekklrlLevGalstknaiskvklld.vtrIDLns..qekgilkqdFlerp 97 
                 ++++eie++GGl++YQlaS++gq+k+rggdssk+l++w+ke  e + +    +++Le+G+ls++n+is+++l++ v+rIDLn+  +++gi +qdF++rp
  CCD22843.1 135 YVMREIEREGGLQNYQLASQVGQDKDRGGDSSKLLIKWIKELVEGDVS----MSALEIGSLSVHNKISTSGLFNpVVRIDLNNlnDSNGIIQQDFMKRP 229
                 6899************************************98876653....69****************************987899*********** PP

        Bmt2  98 lpkke..eekFdiislSLVlNfvpdaakRGemlkrvtkfLkpkkkaslsslflvLPlpCvtnSrylteerlrailsslGfelvkeketkklvyyllel. 193
                 lp+ +  ++kF++is+SLVlNfvp++ +RGem++r+ kfLkp++      lf+vLPlpC++nSry+++ ++ ++l+ lG++ v+ +e++k++y+ll+l 
  CCD22843.1 230 LPTGDgnKDKFNLISCSLVLNFVPTPIERGEMCERFIKFLKPNGY-----LFIVLPLPCINNSRYMNRAHFIDLLTFLGYKEVRYHEANKVCYFLLQLe 323
                 **9743389**********************************99.....************************************************7 PP

        Bmt2 194 ........kekeeakekvfkkeelndgkkrnnFai 220
                         k++++ + +++kk++++dg+k+nnF+i
  CCD22843.1 324 gtdngkhpKNDRKDRLQFIKKRKVQDGNKMNNFSI 358
                 7776666655589999*****************98 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.8e-07    0.0017      65     124 ..     222     283 ..     160     343 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.8e-07
  Methyltransf_23  65 kaqkdqfdeqeaae.....pqgkfdlIvlrevlehvpdpp...ellrqiatllkpgGylllseplasl 124
                      ++ + + +           +++kf+lI+++ vl+ vp p    e   ++ + lkp+Gyl++  pl ++
       CCD22843.1 222 QQDFMKRP-----LptgdgNKDKFNLISCSLVLNFVPTPIergEMCERFIKFLKPNGYLFIVLPL-PC 283
                      22222222.....223333667***************998888999***************9986.34 PP

>> DUF3346  Protein of unknown function (DUF3346)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   3.2e-05      0.12      91     171 ..      64     151 ..      18     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.2e-05
                 HHHHHHHCTS.S-SEEEEEHHHHHHHHHTTS-HHHHHHHHHHHHHHTCTTTSBTTEEEEE.ETTEEE.....EEEEEEETTEEEEEEE CS
     DUF3346  91 lysffrsrls.rratdslllselnqklarniewrrfsldlirelrklaegkvtedlfvvn.lfgyhl.....tiksldekeklvdyqi 171
                 + sf+   +s r +  ++++s+ +q      +  r+   + rel +l ++++ +d+++ + l+  hl      ++ ++ ++ l +yq+
  CCD22843.1  64 VMSFLSGSFSsRNNRTVMMISDKKQCYDEGWNHDRIDEKIERELLRLNKQTGKNDIYANEsLLRKHLiylgyVMREIEREGGLQNYQL 151
                 4566665555155567899*************************************98643666666222223455566666666665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     4e-05      0.14      45      99 .]     201     275 ..     162     275 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4e-05
  Methyltransf_12  45 nnnnnnvelealdlldldgg.................ssfDlvvasnvlhhl...kdirevldnirklLkpgGrl 99 
                      +++n +v+++ ++l d+ g                  ++f l+ +s vl+ +    ++ e+ +++ k Lkp+G+l
       CCD22843.1 201 GLFNPVVRIDLNNLNDSNGIiqqdfmkrplptgdgnkDKFNLISCSLVLNFVptpIERGEMCERFIKFLKPNGYL 275
                      4566666666666665555577888888999999999***************854444499************87 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.1e-05      0.33      47      96 .]     220     277 ..     164     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.1e-05
                      ETTEECCC..TSS-TT...-EEEEEEES-CCC-...CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  47 fvvadaek..lpfedn...sfDlvvssevlhhv...edpekalkeiaRvLkpgGllvi 96 
                      ++++d+ k  lp  d+   +f l+ +s vl++v    ++ + ++ + + Lkp+G+l+i
       CCD22843.1 220 IIQQDFMKrpLPTGDGnkdKFNLISCSLVLNFVptpIERGEMCERFIKFLKPNGYLFI 277
                      46677776445555545559*************766599*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2668.87
//
Query:       CCD22844.1  [L=659]
Description: hypothetical protein NDAI_0A06900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-38  130.7   0.5    1.1e-37  129.5   0.1    1.8  2  DEAD            DEAD/DEAH box helicase
    3.1e-30  104.8   0.8    1.6e-26   92.8   0.0    3.2  3  Helicase_C      Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.094   12.7   0.1       0.25   11.3   0.1    1.7  1  UCR_UQCRX_QCR9  Ubiquinol-cytochrome C reductase, UQCRX/QCR9 
       0.33   11.1  20.2      0.027   14.6   3.6    2.6  3  DUF2052         Coiled-coil domain containing protein (DUF205
        7.3    7.3  12.4         21    5.8  12.4    1.7  1  Ribosomal_60s   60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.1     3e-41   1.1e-37       1     170 [.      94     286 ..      94     293 .. 0.87
   2 ?   -2.4   0.0      0.98   3.5e+03      76     105 ..     392     422 ..     367     435 .. 0.55

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 3e-41
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.ST...SEEEEEETTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx...xxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.........kgktgpkalivePtreLaeqtlnnlkkfkky.id...lrvlliiggva 86 
                 t+iQa+aip +l++ d++++a TGsGKTla+ ip+l+++++t           k++p ali +PtreLa+q+ ++l+++ +  ++   + +l+++gg +
  CCD22844.1  94 TAIQAKAIPYALENADIMGKASTGSGKTLAYGIPILENLIKTakkdssqtdGIKNKPIALIFTPTRELAQQVTKHLQNISQLfLKnspYAILSLTGGLS 192
                 79*****************************************9999988768999********************9999954445568889999**99 PP

                 HHHHHHHHH..TTCSEEEEEHHHHHHHH.HCTSSH..CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSE....EEEEESSBS CS
                 xxxxxxxxx..xxxxxxxxxxxxxxxxx.xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx....xxxxxxxxx RF
        DEAD  87 ardqlskld..ngvdivvgtpgrlddll.stgkln..lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrq....vivlSATlp 170
                  ++q + l+  n+ +iv++tpgr+++ll +++ l   + q+ +lVlDEadrll++g  d+ ++il+ l q+ ++ k ++ +    +++ SAT++
  CCD22844.1 193 IQKQERLLKydNSGKIVIATPGRFLELLeKNNDLIerFCQIDTLVLDEADRLLQDGHFDEFEKILKYLGQKRKELKlKKANqywqTMIYSATFS 286
                 9999999954377***************53333334799*******************************999999554224556*******98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.98
                 SEEEEEETTSSHHHHHHHHHTT.CSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
        DEAD  76 lrvlliiggvaardqlskldng.vdivvgtp 105
                 ++   i ++ ++++ l++l++   + +v tp
  CCD22844.1 392 ISSFQIHSSMTQKNRLKNLEKYqQQALVNTP 422
                 2222333444445555555422366666666 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1   0.00061       2.2      18      73 ..     151     212 ..     134     213 .. 0.81
   2 !   92.8   0.0   4.4e-30   1.6e-26       4     110 ..     357     469 ..     354     470 .. 0.86
   3 ?   -2.1   0.0       1.3   4.7e+03      13      36 ..     630     650 ..     622     657 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00061
                 EEEEEESSHHHHHH........HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  18 kilifvntidrlek........vklllekkgikvavlhgelpqnereeileqfnkgesdvLiat 73 
                  +lif++t++ +++         +l+l+++ + ++ l+g l+ +++e+ l+  n+g+  ++iat
  CCD22844.1 151 IALIFTPTRELAQQvtkhlqniSQLFLKNSPYAILSLTGGLSIQKQERLLKYDNSGK--IVIAT 212
                 579*******444443356667777788889*******************9998887..77777 PP

  == domain 2  score: 92.8 bits;  conditional E-value: 4.4e-30
                 HHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH........TTSSSEEEESGGGTSSSTSTTESEEEESSSS CS
  Helicase_C   4 eallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn........kgesdvLiatdvaerGidipkvnlVinfdlp 94 
                 +++++++  +   g +lif+n i++++k++ +l+  +i++  +h++++q++r++ le+++         g+ +vLia+dva+rG+dip++++Vi+++lp
  CCD22844.1 357 LYCYYFI--TMYPGSTLIFCNAIESVKKLSAMLNILKISSFQIHSSMTQKNRLKNLEKYQqqalvntpLGKPTVLIASDVAARGLDIPDIKHVIHYHLP 453
                 5677776..68899************98666656669**********************95444433335688************************** PP

                 SSHHHHHHHHTTSSST CS
  Helicase_C  95 rnvtsyiqriGRtgRa 110
                 r+ + yi+r+GRt+Ra
  CCD22844.1 454 RSADVYIHRSGRTARA 469
                 ***************8 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.3
                 TTTTSEEEEEESSHHHHHHHHHHH CS
  Helicase_C  13 eeeggkilifvntidrlekvklll 36 
                 +++g++++i  n++d le    l+
  CCD22844.1 630 KKRGHDTIIGFNKVDALE---TLK 650
                 7899999**999999995...432 PP

>> UCR_UQCRX_QCR9  Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   6.9e-05      0.25       8      47 ..     269     308 ..     266     309 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.9e-05
                     TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHH CS
  UCR_UQCRX_QCR9   8 frrnstfvltifagAfvferafDsatdkiWdsiNkGKlWk 47 
                     +++   ++ t++ +A +    fD+++++ W+s+ k K+++
      CCD22844.1 269 LKKANQYWQTMIYSATFSIDLFDKLANSSWKSNKKIKQYE 308
                     5788889*******************************97 PP

>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   5.5    0.0075        27      74     111 ..      13      45 ..       1      77 [. 0.47
   2 ?   -3.0   0.1       1.9   6.7e+03      52      80 ..     274     308 ..     256     319 .. 0.55
   3 ?   14.6   3.6   7.6e-06     0.027      98     184 ..     546     653 ..     489     659 .] 0.65

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0075
     DUF2052  74 leaqqeeleeeeeeeeeeeeeeeeeeeeeeedekekae 111
                  ++++e  +e+eee++e++eeee++e+++      +++
  CCD22844.1  13 ASSDNEG-GEAEEEQQEQQEEEEKDEDDD----GGERK 45 
                 3333333.233333333333222222222....22222 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.9
     DUF2052  52 s......keeslseiLlrreeeaaaaerleaqqee 80 
                 +       + ++s  L+++++++  ++  + +q e
  CCD22844.1 274 QywqtmiYSATFSIDLFDKLANSSWKSNKKIKQYE 308
                 22334555677777777777777766666555555 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 7.6e-06
     DUF2052  98 eeeeeeedekekaea.............deedeeeeeek....eekeeeeekeeeaeaevlseeereelreeFtsimrerFL..............sGe 165
                 +  ++  d+                   d  +e+++  +     +++++++  ++++ ++++++  e+lr+ + + mr+++L              +G 
  CCD22844.1 546 SLRKD--DNW----MkkaaddlgididsD--EEDKD--SilhrSKTKKQNKTMDKDKTKYMRAQLNELLRQPLRKDMRKKYLtgglfnladdlvkkRGH 634
                 11111..111....022234567765322..22222..134546677777777777888889999*****************99999999999999999 PP

     DUF2052 166 DeefDYsavDeneelDdlk 184
                 D+ + +++vD+ e+l + k
  CCD22844.1 635 DTIIGFNKVDALETLKAKK 653
                 9999999999999887744 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  12.4    0.0059        21      51      84 ..      10      42 ..       4      43 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0059
                   XXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS-- CS
  Ribosomal_60s 51 aaaaaaaaaaaaaaaaeekkkeeeeeEeedddmG 84
                   ++aa++  ++++a++++++++eeee+ +eddd G
     CCD22844.1 10 SSAASSDNEGGEAEEEQQEQQEEEEK-DEDDDGG 42
                   45666666666666666666666665.5565554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1893  (0.105583); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.25s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 4848.95
//
Query:       CCD22845.1  [L=438]
Description: hypothetical protein NDAI_0A06910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-46  155.5   0.1    1.7e-45  154.6   0.1    1.5  1  eRF1_2          eRF1 domain 2
    2.3e-38  131.2   0.2    4.7e-38  130.1   0.2    1.6  1  eRF1_3          eRF1 domain 3
    2.7e-20   72.7   0.0    4.8e-20   71.9   0.0    1.4  1  eRF1_1          eRF1 domain 1
    1.9e-10   41.1   0.1      3e-10   40.5   0.1    1.3  1  acVLRF1         Actinobacteria/chloroflexi VLRF1 release fact
    8.7e-09   35.8   0.1    1.9e-08   34.6   0.1    1.5  2  baeRF_family10  Bacterial archaeo-eukaryotic release factor f


Domain annotation for each model (and alignments):
>> eRF1_2  eRF1 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   0.1   4.6e-49   1.7e-45       1     132 [.     142     273 ..     142     274 .. 0.98

  Alignments for each domain:
  == domain 1  score: 154.6 bits;  conditional E-value: 4.6e-49
                 EEEEEEEETTEEEEEEEESSCEEEEEEEE------BSTTBSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTTESEEEEEESSTHHHHHHHHHHHH CS
      eRF1_2   1 kvglivldegeAtigllkgsrtevlkkievsvPkKhkrGgqsarrfeRlreekleeflkkvaeaankafllvdkdklkgiilagpgfvkeefldkdlld 99 
                 k+g+iv+d++++ +gll g++++vl+k++v++PkKh+rGgqsa rf+Rlreek++++++kvae a ++f+++dk ++kg++lag++++k+++ +++l+d
  CCD22845.1 142 KFGFIVMDGQGTLFGLLAGNSRTVLHKFTVDLPKKHGRGGQSAVRFARLREEKRHNYIRKVAEVAVQNFITNDKVNVKGLVLAGSADFKTDLAKSELFD 240
                 69************************************************************************************************* PP

                 HHHHTCCEEEEE-S-TSCHHHHHHHHCCHHHHC CS
      eRF1_2 100 aelkkkviklvdvsyggesglnevlekaaevlk 132
                  +l +kv+++vd+sygge+g+n+++e +ae+l+
  CCD22845.1 241 PRLSAKVVQIVDISYGGENGFNQAIELSAEALS 273
                 ***************************999987 PP

>> eRF1_3  eRF1 domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   0.2   1.3e-41   4.7e-38       1     113 []     277     412 ..     277     412 .. 0.99

  Alignments for each domain:
  == domain 1  score: 130.1 bits;  conditional E-value: 1.3e-41
                 HHHHHHHHHHHHHHHHCTCSSEEESHHHHHHHHHTT-EEEEEEEHCHHTSSSHHHHHS....................-HHH-HHHHHH...HHHHHHH CS
      eRF1_3   1 liqekklleefleelakdtgkavYGveevlkalemgAvetLLvseelersrdtlkekv....................ketgeelelve...lieelve 76 
                 ++qekkll+ +++e+++dtgk +YG++++lkal +gAvetL+v+e+l++ r++ k+++                    k tg+e+e+v+   l+e+l+e
  CCD22845.1 277 FVQEKKLLDSYFDEISQDTGKFCYGIDDTLKALDLGAVETLIVHENLDTVRYIFKNSEdeevikfvkpnqkdksyvmdKATGKETEAVSdkpLVEWLAE 375
                 68*****************************************************9999*******************9******************** PP

                 HHHHTT-EEEEE-TTSHHHHHHHHHTTTEEEEESS-- CS
      eRF1_3  77 nveesgakveiisseseeGeqlvkafgGiaaiLRykv 113
                 +++e+ga++e+i+++s+eG+q+v++fgGi+++LRykv
  CCD22845.1 376 HYKEFGATLEFITDKSSEGAQFVTGFGGIGGLLRYKV 412
                 ***********************************97 PP

>> eRF1_1  eRF1 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   1.3e-23   4.8e-20       2     128 ..      16     136 ..      15     137 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 1.3e-23
                 EEEEE..CTBTTSCCEEEEEE-SCHHHHHHHHHCHTTHEEEEEEEECHHH.......--CEEEEEEEEEEEEEEECTT...SSEEEEEEEEEEGGGG-- CS
      eRF1_1   2 kllkr..dlekdgsgsvtLipeddedlwhlynliapgdsvrastvrkvqresstgsreservklkLtikvekvdfdkd...agvlrisGkvieenehvk 95 
                 kl+ +  +++++g+++++L+++++ ++  + ++++++++++++++++v+r          +v++++t++++k++++++   +g++ ++G +i+e +   
  CCD22845.1  16 KLITSlqKARGNGTSMISLVIPPKGQIALTQKMLTDEYGTASNIKSRVNR---------LSVLSAITSTQQKLKLYNKlppNGLVLYCGDIITEDG--- 102
                 7777776999**************************************99.........9************************************... PP

                 TTSEEEEEE-TTSEEEEEECE.ESHHHHHHHHHH CS
      eRF1_1  96 lgafhtldlelkrpftiikee.wdsfalerLkea 128
                 +++++t+d+e+ +p++++ +  +++f++e L+e+
  CCD22845.1 103 KEKKVTFDIEPYKPINTSLYLcDNKFHTEVLSEL 136
                 9********************9*********996 PP

>> acVLRF1  Actinobacteria/chloroflexi VLRF1 release factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1   8.5e-14     3e-10       3     107 ..     143     251 ..     141     271 .. 0.83

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 8.5e-14
     acVLRF1   3 lgvllvrrggfavgvveggelvaskvgtrdvqgrtaaGGwSqqRfaRrrenqadalleavaeaaarllaeesae....vvlgGdrslvaevledarlap 97 
                 +g+++    g  +g++ g+ ++  +++t d  +++ +GG+S  RfaR re++  + +++vae a + +  +++     +vl+G      ++++++  +p
  CCD22845.1 143 FGFIVMDGQGTLFGLLAGNSRTVLHKFTVDLPKKHGRGGQSAVRFARLREEKRHNYIRKVAEVAVQNFITNDKVnvkgLVLAGSADFKTDLAKSELFDP 241
                 5667777777899****************************************************9996666666789******999999998877666 PP

     acVLRF1  98 latlareell 107
                    +++ +++
  CCD22845.1 242 RLSAKVVQIV 251
                 5444444455 PP

>> baeRF_family10  Bacterial archaeo-eukaryotic release factor family 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.1   5.4e-12   1.9e-08       4     119 ..     131     250 ..     129     271 .. 0.88
   2 ?   -2.9   0.0         2   7.3e+03      67      81 ..     371     385 ..     357     392 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 5.4e-12
  baeRF_family10   4 apLlealdeyerygvvlvdreraRlfevylgeleeveevegevpgrtktggwksqdrfqrreeeqaerhlkevAellaklleerg...verlvlg 95 
                     + L e+l++++++g +++d ++  +   ++ +    ++++ + p+++ +gg+ s  rf+r +ee+++ ++++vAe++++ + +++   v+ lvl+
      CCD22845.1 131 EVLSELLEADDKFGFIVMDGQGTLFGLLAGNSRTVLHKFTVDLPKKHGRGGQ-SAVRFARLREEKRHNYIRKVAEVAVQNFITNDkvnVKGLVLA 224
                     6799******************9999999999999*****************.************************99998888899******* PP

  baeRF_family10  96 Gdeeetaall..drlpkalrarvvgt 119
                     G ++ +  l+  +++  +l a+vv+ 
      CCD22845.1 225 GSADFKTDLAksELFDPRLSAKVVQI 250
                     **777776652256889999999976 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2
  baeRF_family10  67 eqaerhlkevAella 81 
                     e+  +h+ke++++l+
      CCD22845.1 371 EWLAEHYKEFGATLE 385
                     566777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3187.61
//
Query:       CCD22846.1  [L=220]
Description: hypothetical protein NDAI_0A06920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0037   16.5   0.0     0.0076   15.5   0.0    1.5  2  ATG19_autophagy  Autophagy protein Atg19, Atg8-binding
  ------ inclusion threshold ------
      0.075   13.2   1.5        1.9    8.6   1.2    2.1  2  HEPN_AbiV        AbiV


Domain annotation for each model (and alignments):
>> ATG19_autophagy  Autophagy protein Atg19, Atg8-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.35   3.1e+03     168     169 ..     112     113 ..      75     141 .. 0.56
   2 !   15.5   0.0   8.5e-07    0.0076       2      44 ..     158     200 ..     157     212 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.35
  ATG19_autophagy 168 dv 169
                      d+
       CCD22846.1 112 DI 113
                      22 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 8.5e-07
  ATG19_autophagy   2 idipednpelvdFFskikTesqLeevmngYekYekllqkfdgk 44 
                      i ip  n+ l  FFs+i  e++L + +++  ++ek l   +++
       CCD22846.1 158 ISIPPTNSTLSSFFSHITSEEELTKCIKNCLDHEKCLGTKNQE 200
                      89**************************999999988777665 PP

>> HEPN_AbiV  AbiV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.2   0.00021       1.9      44     130 ..      41     136 ..      40     137 .. 0.74
   2 ?    2.8   0.0     0.013   1.2e+02      31      74 ..     168     209 ..     163     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00021
   HEPN_AbiV  44 gKalllydalegfws.....edkdlkrlkkafrdHkkKhn.laylf..lkaftlllsaee.sasfgaerldefeeliqleaeeelakklnllKnag 130
                  Ka++   +++++++     + + l+++ k  ++H   h+   y f  ++ ++ + ++   + ++++++ld++ ++iq+  ++ l+k+ ++++ ++
  CCD22846.1  41 QKAFITKHVFWKKNDddvqrPLTILDDFEKLRENHLTNHSsHLYIFdeVPTIESDGKGNDnNIIIHKSQLDDIIQAIQRLDDRTLHKEMEEFRSKA 136
                 5999999999999776666633344455565555555555333366997777777776666999**********************9999999775 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.013
   HEPN_AbiV  31 rAysLlilaiEElgKalllydalegfwsedkdlkrlkkafrdHk 74 
                 ++++ +i++ EEl K++   + +e+    ++++++ ++  ++H+
  CCD22846.1 168 SSFFSHITSEEELTKCIKNCLDHEKC--LGTKNQEGTDGGTKHT 209
                 678999**********9888888887..7777777788888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1643.65
//
Query:       CCD22847.1  [L=351]
Description: hypothetical protein NDAI_0A06930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-30  104.9   0.4    4.8e-30  103.7   0.4    1.7  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    9.3e-26   90.3   0.4    1.4e-25   89.8   0.4    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    6.7e-06   27.2   0.0    1.3e-05   26.3   0.0    1.5  1  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.4     8e-34   4.8e-30       2     106 ..      35     140 ..      34     143 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 8e-34
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvsldGgfaeyv 99 
                 +e+li+vk++g+C++Dlh +kg++ l +klpl+ GHE +G+v++vg++v+++kvGd   +++l   c  C++C+ g+e+ C++a+l g++ dG+f++y 
  CCD22847.1  35 TEILINVKYSGVCHTDLHAWKGDWPLATKLPLVGGHEGAGIVVQVGENVQGWKVGDLAGIKWLNGsCMACEYCELGNESNCPNADLSGYTHDGSFQQYA 133
                 69***********************************************************99877********************************* PP

                 EECGGGE CS
       ADH_N 100 vvpekkl 106
                 ++++ ++
  CCD22847.1 134 TADAVQA 140
                 9987665 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.4   2.4e-29   1.4e-25       1     129 [.     185     313 ..     185     314 .. 0.95

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 2.4e-29
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTSSEEE.E CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGggkgeee.f 97 
                 g+G++avq+Aka+G ++ ++d+ eek +l ++lG + +i+ +++ d+v +i ++t+g g++ v++++ s+a++ a++++++ +G++v+vG++ + +   
  CCD22847.1 185 GLGSLAVQYAKAMGYRILGIDGGEEKEKLFRELGGEIFIDFTKTkDIVGDIIKATNG-GAHGVINVSVSEAAIGASTEYCRANGTVVLVGLPRDAKCkS 282
                 89***************************************9999**********87.*********************************66655569 PP

                 EHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  98 dlrnlllkeksilGsllgslreefkealdlla 129
                 d++n++ k++si+Gs +g+ r + +eald+++
  CCD22847.1 283 DVFNQVVKSISIVGSYVGN-RADTREALDFFS 313
                 *******************.*********976 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.1e-09   1.3e-05       4     133 .]     220     347 ..     217     347 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.1e-09
                   SEEEETT.STTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-...-HHHHHHH CS
  ADH_zinc_N_2   4 devidyr.tedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas..aqadileel 93 
                   + +id + t+d++    +at+g g   v++   +ea++ as ++++ +G++v +g p    +++k +++  ++ vk   ++   ++  ++ad  +e 
    CCD22847.1 220 EIFIDFTkTKDIVgdiiKATNG-GAHGVINVSVSEAAIGASTEYCRANGTVVLVGLP----RDAKCKSDVFNQVVKSISIV--GSYvgNRAD-TREA 308
                   5567777788888888888865.577788776678888*******777*****9964....22333222322222222222..223556999.**** PP

                   HHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  94 aalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   +++++ G ++ ++    pl++++e + ++e+g+ +G+ V+
    CCD22847.1 309 LDFFSRGLVKSPIH-IAPLSDLPEIFGKMEKGQIVGRYVV 347
                   *************8.9*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2724.72
//
Query:       CCD22848.1  [L=293]
Description: hypothetical protein NDAI_0A06940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-41  139.9   0.1    8.2e-41  139.3   0.1    1.3  1  Ribosomal_S9     Ribosomal protein S9/S16
  ------ inclusion threshold ------
      0.051   13.5   0.0       0.13   12.2   0.0    1.6  1  Erythro-docking  Erythronolide synthase, docking


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.1   9.1e-45   8.2e-41       1     121 []     173     293 .]     173     293 .] 0.99

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 9.1e-45
                   EECTTEEEEEEEEESSSEEEETTEECCHHSTTSCHHHHHCHHHHHTTTSSSEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTCCCTS- CS
  Ribosomal_S9   1 GrrKesvArvwikegkgkilvngksleeYfkeeaarekvleplkltgllgkfdvfvkvkgGGlsgqaeAirlgiaraLvalekeekkeLkkaglltr 97 
                   GrrK ++A+v++++g+g ilvng++l++Yf e ++r +++ pl++++++gk+++f++++gGG +gqaeAi ++i +aLv +++  k+ L+k+g+l r
    CCD22848.1 173 GRRKAASAKVYVVRGQGDILVNGRQLNDYFVELKDRDSIMYPLRVIDSVGKYNIFATTSGGGPTGQAEAIMHAIGKALVVFNPLLKSRLHKSGVLSR 269
                   9*****************************99***************************************************66************ PP

                   B--------TTSSCTTB----S-- CS
  Ribosomal_S9  98 DpRvvErkKtgkkkARkkyqwskR 121
                   D R vErkK+gk+kARk + w+kR
    CCD22848.1 270 DYRHVERKKPGKRKARKMPMWVKR 293
                   ***********************9 PP

>> Erythro-docking  Erythronolide synthase, docking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05      0.13      24      42 ..      59      77 ..      53      86 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
                     TSS-THHHHHHHHHHHHHH CS
  Erythro-docking 24 dedGhdDvGaRLeaLLRRW 42
                     ++  h+Dv +RLe+LLR++
       CCD22848.1 59 ANPIHEDVINRLESLLRKY 77
                     5667*************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2230.25
//
Query:       CCD22849.1  [L=247]
Description: hypothetical protein NDAI_0A06950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-40  139.1   0.0    1.7e-40  139.0   0.0    1.0  1  RibD_C    RibD C-terminal domain


Domain annotation for each model (and alignments):
>> RibD_C  RibD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   0.0   9.7e-45   1.7e-40       3     199 ..      30     240 ..      28     241 .. 0.90

  Alignments for each domain:
  == domain 1  score: 139.0 bits;  conditional E-value: 9.7e-45
                 EEEEEEEETTSBSSCTTSSGCTSS-HHHHHHHHHHHHTSSEEEEEHHHHHHHT--SS--SSCHSCHHHTT.GSS-EEEEEETTS-S-TTSH......HH CS
      RibD_C   3 vilklavSlDGklaaaggeskwitgeearadvhelraeadailvGrgtvladnpsltvrwvkkreaeadaearqpvrvVvdstlrvpldak......vl 95 
                 v+l++a+S+D k++   g ++ i++ e+++++h+lr ++dailvG+gt lad+p l+++wv++++++++ + ++p+ +++d+++++  + +      + 
  CCD22849.1  30 VTLTYAQSIDAKISKGPGIRTAISHAETKSMTHYLRYHHDAILVGSGTALADDPGLNCKWVPANNNYTKSFDNSPRPIILDTKQKWSFKGSkmydlfMA 128
                 99*************************************************************988788888****************999*****888 PP

                 HSS.S-EEEEESSCSCHHHHHHCCE........SE-HHHHHHHHHHT.T--EEEEEETHHHHHH.HHHTTT-SEEEEEEESCE--TTSBCSSSSST-SS CS
      RibD_C  96 tdd.aptlvatteeadkekveklkv........rvdlkelleeLker.girsllveGGatLags.llraglvDelrlyiaPkllGgagktlfdgegfka 183
                 +++ +p++++t++++++e+   + v        +vd+kell++L  + gi+s+++eGGa+++++ l++ ++vD l+++i ++ lG+ g  + ++  +  
  CCD22849.1 129 KEGkSPIVIVTKAPTKEEEYVSYLVcpsdpttgYVDWKELLQRLNNEyGINSVMIEGGANVIQQlLTKPDIVDNLIVTIGSIYLGKSGVGVSPDN-S-- 224
                 88889999999999999988888866677779********************************66688*****************444444444.3.. PP

                 EEEEEEEEEEETTEEE CS
      RibD_C 184 lklklvksealgegvv 199
                 ++l++  +++ +++++
  CCD22849.1 225 VELTDIDWWKGTTDTI 240
                 5699999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2031.50
//
Query:       CCD22850.1  [L=215]
Description: hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-33  112.0   1.5    9.8e-33  111.9   0.4    1.7  2  RNA_pol_Rpb5_C  RNA polymerase Rpb5, C-terminal domain
      2e-28   98.8   0.4    4.1e-28   97.8   0.4    1.5  1  RNA_pol_Rpb5_N  RNA polymerase Rpb5, N-terminal domain
  ------ inclusion threshold ------
      0.012   15.8   0.5      0.024   14.9   0.5    1.4  1  Sof1            Sof1-like domain
      0.042   13.9   0.0       0.11   12.5   0.0    1.7  2  Mrr_cat         Restriction endonuclease
       0.14   11.9   0.0       0.34   10.6   0.0    1.7  1  SH3_2           Variant SH3 domain


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb5_C  RNA polymerase Rpb5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.5   8.9e+03      51      68 ..      94     111 ..      90     112 .. 0.68
   2 !  111.9   0.4   2.7e-36   9.8e-33       1      73 []     142     214 ..     142     214 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.5
                     TTSEEEEEEEETTTEEEE CS
  RNA_pol_Rpb5_C  51 kGdvvkItrksetageav 68 
                     k+ v+ I  k   +g +v
      CCD22850.1  94 KNFVIHIQEKNFQTGIFV 111
                     566888888877776666 PP

  == domain 2  score: 111.9 bits;  conditional E-value: 2.7e-36
                     ..-TSSSS--EEEEE-HHHHHHHHHHTT--TTCSS-EETTSHHHHCCT--TTSEEEEEEEETTTEEEEEEEEE CS
  RNA_pol_Rpb5_C   1 vnitkHelvPkhevlseeekkellkklkikeeqLPkisksDpvarylglkkGdvvkItrksetageavtYRlV 73 
                     vnit+HelvPkh +lseeekkellk++++ke+qLP+i++ Dpva ylglk+G+vvkI+rkset+g++ +YR++
      CCD22850.1 142 VNITHHELVPKHIKLSEEEKKELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRIC 214
                     7**********************************************************************96 PP

>> RNA_pol_Rpb5_N  RNA polymerase Rpb5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.4   1.1e-31   4.1e-28       1      88 [.       6      99 ..       6     100 .. 0.93

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 1.1e-31
                    THHHHHHHHHHCCCCCCCCCCCEE--CCCCT--CHHHHCCSB-SSSSB-GCCT-EEEESS.SS......--EEEEEE-SSTTE-TCCCHHHCHH CS
  RNA_pol_Rpb5_N  1 ereikrlfrirrTvleMlkdRgYlvaeeelnisleeFkekygdepkevdrekltisaskkddp......seqilVfFpeekkvgvktikkyaer 88
                    er+i+rl+r+ rTv eM++dRgY +++ee++ sle+Fk+ky+d++++++r+ ++++ + ++++       ++++ +F++e++vgvkt+k+++ +
      CCD22850.1  6 ERNISRLWRTFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPTEESiakfpdMGSLWAEFCDEESVGVKTMKNFVIH 99
                    5789******************************************************7666666666689*******************9865 PP

>> Sof1  Sof1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.5   6.8e-06     0.024      26      67 ..     133     174 ..     129     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.8e-06
        Sof1  26 ekykhmpeikrIarhRhvPkaikkakkekremkeaekrKeen 67 
                 e +++   +  I  h  vPk+ik  ++ek+e ++  + Ke +
  CCD22850.1 133 ETFHEASLVVNITHHELVPKHIKLSEEEKKELLKRYRLKESQ 174
                 7889999999*************************9999986 PP

>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.5   9.1e+03      77      87 ..      23      33 ..      14      37 .. 0.59
   2 ?   12.5   0.0   3.1e-05      0.11      58     100 ..      85     127 ..      81     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.5
                ..SEEEEEESS CS
     Mrr_cat 77 gadkgifvtts 87
                  d+g f+t  
  CCD22850.1 23 VRDRGYFITQE 33
                35677777754 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.1e-05
                 TS-B-HHHHHHHHHHCTTS..SEEEEEESS-B-HHHHHHHHTT CS
     Mrr_cat  58 knkvgvkeVqeligalkkrgadkgifvttsdftkaAreeaeel 100
                 + +vgvk  + ++  ++++++++gifv    +t++A++ + ++
  CCD22850.1  85 EESVGVKTMKNFVIHIQEKNFQTGIFVYQTNVTPSAMKLVPSI 127
                 679**********************************998764 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   9.6e-05      0.34      15      35 ..     185     204 ..     159     213 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.6e-05
                 B..--B-TTEEEEEE..EEEECT CS
       SH3_2  15 e..LsfkkGdvikvlslgskdsd 35 
                    L +k+G+v+k++   +k+  
  CCD22850.1 185 AlyLGLKRGEVVKII---RKSET 204
                 15599**********...44333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1654.31
//
Query:       CCD22851.1  [L=179]
Description: hypothetical protein NDAI_0A06970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-11   43.4   7.5    3.5e-11   43.4   7.5    1.3  1  MFAP1     Microfibril-associated/Pre-mRNA processing
  ------ inclusion threshold ------
      0.093   12.3  10.7       0.14   11.8  10.7    1.3  1  SR-25     Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> MFAP1  Microfibril-associated/Pre-mRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   7.5   3.9e-15   3.5e-11       4     128 ..      45     177 ..      38     179 .] 0.77

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 3.9e-15
                 XXXXXXXXXXXXXXX.XXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXS-SSSSHHHHHH CS
       MFAP1   4 eeepkrkllkPvFvp.kskRetiae....keaeeeeeeeeeeeekkeeeerkkeakklveeeirkeaeakeaedeeeeea...edvddtDeldpeaeye 94 
                 +++ + +l +PvF++ ks+R+  +e    ++ +++ + ++  +++k  +er ++a++l++ + r +   +++ +++++       ++d+D +dpe e+e
  CCD22851.1  45 SSDDEIVLHRPVFLNrKSSRKGDEEdtkkSNGNKKLKIDDGTSKAKLLKERAEAANRLLDTQNRMKLIVDSNYSTDQDILrrtLLLNDDDSIDPEGEKE 143
                 22344599*****972455655555554344455555666778889999*************999999877765555444777999************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS- CS
       MFAP1  95 aWklReLkRikrdreereerekekeelerrrnlt 128
                  W +R  +Ri+r+re+  +++ e ee e  + l+
  CCD22851.1 144 LWIVRRNERIQRHREKLIAKQLELEEYETNKMLN 177
                 **************************99877665 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  10.7   1.5e-05      0.14      56     124 ..      16      91 ..       1     122 [. 0.47

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.5e-05
       SR-25  56 kkkkrrrssssssss.ssssssssssssssssdd.........rkkrgkkkdkkkkkkkkkkkkkkekkkakekakaea 124
                 +k  ++++ +s  +  ssss+ sss  s ss+d+         ++k ++k d    kk++   +kk+k      +ka+ 
  CCD22851.1  16 TKSVQQEKVASELENiSSSSETSSSEESDSSDDEivlhrpvflNRKSSRKGDEEDTKKSN--GNKKLKIDDGT-SKAKL 91 
                 344444444444444044444444444455555599988888744444444444333333..33333322221.11111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1294  (0.0721736); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1408.90
//
Query:       CCD22852.1  [L=323]
Description: hypothetical protein NDAI_0A06980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-48  165.2   0.0    1.9e-48  164.9   0.0    1.1  1  Suc_Fer-like  Sucrase/ferredoxin-like


Domain annotation for each model (and alignments):
>> Suc_Fer-like  Sucrase/ferredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.9   0.0   1.1e-52   1.9e-48       1     184 [.      77     302 ..      77     316 .. 0.92

  Alignments for each domain:
  == domain 1  score: 164.9 bits;  conditional E-value: 1.1e-52
  Suc_Fer-like   1 llgtvkayskhvlvatgksdWpsk.vedekgslaealkkl.k..............lllsasslp.....eekseeekttvlllPdfklveevtpss 76 
                   ll+t k+ + h++v t++ dW+ + ++++++s+  +++k+ +              l++s +slp      e ++ +k++vl+lP f++++++++++
    CCD22852.1  77 LLNTSKTPKIHFIVPTSQIDWQFDaCNEKEDSVQYKINKWcNdhmdeysnvgegqtLTCSVTSLPknimdIEVMKGTKNNVLVLPFFVWIKDLRSEN 173
                   578999******************8888888*********559************9999999999999996688999******************** PP

  Suc_Fer-like  77 veelvkeflkp................kvrklpekaliLvCshktrDarCgilapllrkelerelre......kederpggvrvgfisHvGGHkfAg 151
                   v++++++++ +                  + ++eka++++Csh+trD+rCg++ap l k +e+ lr+      ++d rp+gv+++fi+HvGGHk+Ag
    CCD22852.1 174 VNDVLDDLVPKllkhdidrdqllrereYLSLAREKAFVFICSHTTRDKRCGVTAPYLCKTFEKLLRPhglyrdNSDFRPDGVNIAFINHVGGHKYAG 270
                   *******99989999********9999556678999*******************************77776666999******************* PP

  Suc_Fer-like 152 nviiyrkekagqgiwygrvepedvegiveetil 184
                   nv iy+k+ ++++iw+gr++p++v +i+e+ + 
    CCD22852.1 271 NVQIYLKR-EHTLIWLGRITPKNVGTIIENVLV 302
                   *******9.6*******************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2495.73
//
Query:       CCD22853.1  [L=978]
Description: hypothetical protein NDAI_0A06990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-08   34.0   9.0    1.5e-08   34.0   9.0    3.4  4  Fungal_trans  Fungal specific transcription factor domain
    7.6e-08   32.4  13.5    1.8e-07   31.1  13.5    1.6  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
       0.29   11.1   1.1         11    6.0   0.1    3.1  3  Fanconi_A     Fanconi anaemia group A protein


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.5       0.1   6.2e+02     172     208 ..      82     122 ..      75     137 .. 0.63
   2 !   34.0   9.0   2.5e-12   1.5e-08       4     265 ..     380     675 ..     377     677 .. 0.85
   3 ?   -3.7   0.1      0.81   4.8e+03     219     248 ..     720     749 ..     698     772 .. 0.70
   4 ?    0.8   0.0     0.034     2e+02      38      80 ..     849     889 ..     839     920 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.1
  Fungal_trans 172 rppllddsqinlpLPcddddlwesddaseetlvetk.....l 208
                   + pl + +q++lpLP   d ++     s+ +    +     +
    CCD22853.1  82 HFPLQNTNQQQLPLPLVND-IDRNIAPSFRFGSISPtsfisN 122
                   66789999*****997666.5555555554444433446432 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 2.5e-12
  Fungal_trans   4 ffsnfhpqfpilhk.....psflpktssenssksayaspllllailalGalfsesetkesnssltses.........qefiafplraeili..hedf 84 
                   + s ++  +pil        s+ +k+++ + s+ ++ +++ll+++l+ G + +++ ++++ + l+++          +   + +l a +++  ++++
    CCD22853.1 380 YLSSSSLYLPILSInsdkcKSLIEKYYNFEESNLTIEESFLLNVCLCNGVTAAREVSSTECYRLRKDNncplkdevfRIETQCFLNAISYYhqYYSC 476
                   55555556688877666677777777899999**********************************9988888888744455566777777778899 PP

  Fungal_trans  85 sspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpp.l..... 175
                   s++s s+++l sLl++  y     + +l+  ++ +a+++a++lgL+ +++y++         e +++ r lw ++  lD ++a+ l  +p +     
    CCD22853.1 477 SYNSISMQSLRSLLMFVEYIRINMSFELAAPFLFTAINIAVRLGLNSESYYKN------MNLESFQEARMLWDYCRRLDNLFAFALTKNPvIghdwf 567
                   9************999888888888888888**********************......888889999**********************8678888 PP

  Fungal_trans 176 .lddsqinlpLPcddddlwesddaseetlvetk....................lsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqsek 251
                    ++d++  l +++  +   +s++as+  l  t                     ++++  s    +++++L +i s+i + +++  k + ++ ++ e 
    CCD22853.1 568 nISDEEYYLKIFKIIS-SHSSSSASKRALEVTAkdddddddgtqitqlikiiaNDPSNVSIVLDYYMSRLIEIESNINK-VCFALKSCHNKPFD-EI 661
                   9999999999998888.666666666666665579999999999999999999999999999*****************.66666667777777.79 PP

  Fungal_trans 252 lswveeleraldnW 265
                   l++v +l+  l++W
    CCD22853.1 662 LDNVCKLNDDLKQW 675
                   *********99999 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 0.81
  Fungal_trans 219 sfllaLkkilskiagsllsiekqlqqrdlq 248
                    +ll Lk il+++a ++l+ +k l +++l 
    CCD22853.1 720 FQLLYLKIILGSFAVNFLNDNKNLFEHSLG 749
                   566777777777777777777766666554 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.034
  Fungal_trans  38 llllailalGalfsesetkesnssltsesqefiafplraeili 80 
                   ++ ++++ + ++f+e++ +++n    ++  +++ ++l++ i i
    CCD22853.1 849 FFTFLMNLVSSYFTEKNPQFNNVFNYNS--NYYSTFLEKLINI 889
                   4557899999999999999998888874..6888888887766 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1  13.5     3e-11   1.8e-07       1      32 [.     154     188 ..     154     193 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 3e-11
                 SS-HHHHHCT---STSSSS...-HHHHHCTHHHCC CS
     Zn_clus   1 haCdnCrkkKvKCdakkPa...CsnCkklnleCtf 32 
                 +aCd Crk+K+KC+a  P+   C nC k+n +Ctf
  CCD22853.1 154 RACDYCRKRKIKCSAVDPKtkkCPNCDKNNMKCTF 188
                 69*************7777777************6 PP

>> Fanconi_A  Fanconi anaemia group A protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.2   7.3e+03      10      47 ..     790     826 ..     787     829 .. 0.69
   2 ?    6.0   0.1    0.0018        11       7      24 ..     847     865 ..     834     874 .. 0.85
   3 ?    2.2   0.0     0.029   1.7e+02      15      38 ..     900     923 ..     898     927 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
   Fanconi_A  10 FsLmgLlsskltpkeavdslkalevcaeiLecLekrkv 47 
                 + L g+ s      +++d + +l++   ++e Lek +v
  CCD22853.1 790 YLLTGIFSLLFHAIKNIDDPDKLDIV-YVIELLEKCHV 826
                 55666666666666778888889985.57888887655 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0018
   Fanconi_A   7 LfFFs.LmgLlsskltpke 24 
                 L FF+ Lm+L+ss+ t k+
  CCD22853.1 847 LAFFTfLMNLVSSYFTEKN 865
                 5566659*********984 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.029
   Fanconi_A  15 Llsskltpkeavdslkalevcaei 38 
                 +ls  l+pk+a d +++l++ ++i
  CCD22853.1 900 ILSKCLKPKNANDDERKLDIFKDI 923
                 69999**************98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (978 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1180  (0.0658152); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 7058.81
//
Query:       CCD22854.1  [L=320]
Description: hypothetical protein NDAI_0A07000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-39  135.0   0.0    1.1e-37  129.9   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
      0.054   13.3   0.2       0.19   11.6   0.0    2.0  2  IF2_N         Translation initiation factor IF-2, N-terminal 


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0   1.2e-41   1.1e-37       2     292 ..      22     296 ..      21     298 .. 0.94

  Alignments for each domain:
  == domain 1  score: 129.9 bits;  conditional E-value: 1.2e-41
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH....-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHH CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkk....srkkreeviiatKvdlrdaeiksglskeniresleesl 94 
                   +glGt++ +++     +e  e++++a+ aG++++DtA +Y   + e ++G+alk+    ++ kree++i+tKv        +    +n   s+++sl
    CCD22854.1  22 IGLGTASPKDR----YPETKEAVKAAIRAGYRHIDTAYFY---KTEPYIGQALKElfesAEIKREELFITTKV--------WPTFWNNPSDSIDQSL 103
                   99****99996....89999********************...***************99*************........4444567789****** PP

                   HHHT-S-EEEEEE-S--TTS-..........................HHHHHHHHHHHHH...TTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B CS
  Aldo_ket_red  95 krLgtdyvDllllHrpdpslp.........................sieevldaleelvk...eGkiraiGvSnfsveqlekakkkkkvkivavqve 163
                   k Lg dyvDl+l H+p +  +                         + + +++ale+ +       +raiGvSn+++e le++ k+ kv+++++qve
    CCD22854.1 104 KDLGIDYVDLVLQHWPVCFQKvensqgniiglprdkdgnalfekdaDWLFTYKALEKIYLdpkDNRVRAIGVSNYPIEYLERLFKECKVTPAINQVE 200
                   ****************9998899*********************99999999*******9777888******************************* PP

                   -BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEE CS
  Aldo_ket_red 164 ynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgiv 260
                    ++   l + +l ++c+++ + l aysplg+             +                  ++++ +++lak+++v++a +  +y +  +++++v
    CCD22854.1 201 VHPH--LPQLELNKFCHDHAILLTAYSPLGSDGAP---------N------------------LKIKSVQDLAKKYKVEPADILTSYHI--SKGNVV 266
                   ****..************************53333.........3..................89************************..9***** PP

                   EE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 261 ipgasnieqlednldalelklseeevaeldel 292
                   +p + n++++ +n++    kl+++++++ld++
    CCD22854.1 267 LPRSLNPKRIAANVSFA--KLTDDDLSKLDQV 296
                   *****************..**********996 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.45   4.1e+03      34      43 ..      94     103 ..      93     110 .. 0.64
   2 ?   11.6   0.0   2.1e-05      0.19       4      22 ..     238     256 ..     236     263 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.45
       IF2_N  34 shsssLDeet 43 
                 ++s+s+D+  
  CCD22854.1  94 NPSDSIDQSL 103
                 5677777654 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.1e-05
       IF2_N   4 irVyeLAkeLgvkskevik 22 
                 ++V++LAk+ +v+++++++
  CCD22854.1 238 KSVQDLAKKYKVEPADILT 256
                 79***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2443.67
//
Query:       CCD22855.1  [L=720]
Description: hypothetical protein NDAI_0A07010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2125  (0.118523); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5040.69
//
Query:       CCD22856.1  [L=343]
Description: hypothetical protein NDAI_0A07020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-38  128.4  13.6    8.6e-19   67.1   2.0    2.9  2  PQ-loop   PQ loop repeat
     0.0041   16.2   0.0     0.0059   15.7   0.0    1.2  1  MMM1      Maintenance of mitochondrial morphology protein 1
  ------ inclusion threshold ------
      0.092   13.0   0.4       0.17   12.1   0.4    1.3  1  SARA      Smad anchor for receptor activation (SARA)


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   4.2   3.6e-22   2.1e-18       1      55 [.      13      67 ..      13      73 .. 0.93
   2 !   67.1   2.0   1.4e-22   8.6e-19       2      59 ..     215     272 ..     214     274 .. 0.95

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 3.6e-22
     PQ-loop  1 lseilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllyliln 55
                +s i g++s+ +w+v+++PQi++N+ rkS eGlS+lf++lwl+Gdi++ l+ i +
  CCD22856.1 13 ISGITGFMSISCWVVVFLPQIYENFIRKSSEGLSLLFIVLWLIGDIFNWLGAIKQ 67
                68899*******************************************9998866 PP

  == domain 2  score: 67.1 bits;  conditional E-value: 1.4e-22
     PQ-loop   2 seilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfpp 59 
                 ++i+gy+s+vl+l s++PQi++N+krkS++G+S+lf+l+++lG++l++++ ++ + +p
  CCD22856.1 215 AQIFGYLSAVLYLGSRVPQILLNFKRKSCDGVSFLFFLFACLGNTLFIISVLVVSLDP 272
                 689***********************************************99988765 PP

>> MMM1  Maintenance of mitochondrial morphology protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   9.9e-07    0.0059      14      53 ..     289     328 ..     278     343 .] 0.63

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 9.9e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
        MMM1  14 vvllliifikffifgeasskeskasskaaerlssskkkls 53 
                 ++l l+ifi+ffifg+ ++++++++++++e+++ +++++s
  CCD22856.1 289 LLLDLTIFIQFFIFGDGQENSKRTTAEEEEEYEDATNFTS 328
                 456699************9999999886664333222222 PP

>> SARA  Smad anchor for receptor activation (SARA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   2.8e-05      0.17       9      33 ..     183     206 ..     182     208 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.8e-05
        SARA   9 EYCStipPlqQvaaslqsppPsVmV 33 
                  YCSt+pP +  a+s +    s  V
  CCD22856.1 183 QYCSTLPPRRDTASSVSPKA-STTV 206
                 6********99998844333.5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2693.10
//
Query:       CCD22857.1  [L=680]
Description: hypothetical protein NDAI_0A07030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.9e-136  454.8  26.5   7.4e-125  417.6  19.7    2.0  2  Vps52           Vps52 / Sac2 family
  ------ inclusion threshold ------
        1.4    8.2   5.0        2.1    7.6   5.0    1.2  1  BUD22           BUD22
        1.6    8.4   4.3          4    7.1   4.3    1.6  1  TMEM174         Transmembrane protein 174
        5.4    6.7   7.0        0.5   10.0   1.3    2.1  2  FAM176          FAM176 family


Domain annotation for each model (and alignments):
>> Vps52  Vps52 / Sac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.6  19.7  1.7e-128  7.4e-125      24     445 ..      73     544 ..      51     555 .. 0.89
   2 !   41.5   0.5   1.7e-14   7.5e-11     434     502 ..     575     643 ..     572     647 .. 0.93

  Alignments for each domain:
  == domain 1  score: 417.6 bits;  conditional E-value: 1.7e-128
       Vps52  24 aaidsvleqledlLeeFqsdlssissdikklqekSnelqlrLenrkaveaklsklvddlivppelidvIiegkvne......esiaekleilnkkksa. 115
                 + +++v++ l d++++F+ +ls  + d+++++ekS el+  Le++ ++ +++s+lv+dli+p ++i++I++gk++e       +i +k++i+ k+  + 
  CCD22857.1  73 HTLNDVVPPLRDYMTNFKTQLSDFTRDLSFIREKSSELEHLLEYNATKLSAISPLVNDLIIPTNIIKDILHGKIDEswqeniAFIRDKQQIYAKYNCTs 171
                 5789***************************************************************************99999*******99997641 PP

       Vps52 116 ..ekdqs..vkslkalkDvk...klldkLrnkalekireyivqkiktlRkpk.vnvqiiqnkLlkvkkifeFllennrklalelrqaYidTmkkiyley 206
                   + +++  ++ l  +kD++   ++l+ L++++le+++++iv +ik+lR+++ +++q+iqnkLlk    f+F+ +nn +lalelrqaY +Tm ++y+ey
  CCD22857.1 172 ttGTENDrrTSTLTPPKDFQtmcEILECLKEVILERSKKFIVFNIKSLRSHQpTPSQQIQNKLLKFNDGFQFIVDNNYSLALELRQAYSYTMRWYYKEY 270
                 1133333448889999****99999************************************************************************** PP

       Vps52 207 frsYirsLtklqfeeietkddL.igvedtak......................klffsktaslkkrnkiftigkRlkilkaqldapvlvphiaeknttk 282
                 f +YirsLt+lqf++i++++ L +g+ + +                        l+ s   ++  ++ +f+i kRl il+ ++d++v+v++iae+ +tk
  CCD22857.1 271 FARYIRSLTILQFKQIDSQYSLgNGLANVSIidlanhttsantsllptylsptYLYGSTAITDAAISDYFQIRKRLSILS-KEDNTVMVSQIAENIHTK 368
                 ***************************9999777777766666555555555444455999*******************.**************9888 PP

       Vps52 283 .yyiEalfrslelalldnatsEYlFlkefFavsgdq..aeeifeqifektlslatky.leqlisdcyDaigvllsIriinrlqleaerrrvPvldsyln 377
                   yiE +f++l+la+ dn+++EY Flk fF++s ++   + i+eqif++tl+la +y +++l++++yD++gvl+sIr++n+lq+ea++ ++Pv+ syln
  CCD22857.1 369 dTYIETGFKNLNLAIFDNCSVEYNFLKKFFKISENEneLNGILEQIFQPTLDLAMEYtINHLLQQSYDIFGVLISIRVANQLQFEAKKYKLPVITSYLN 467
                 3589**************************997654114578*************994599************************************** PP

       Vps52 378 svlillWPRFqlvldlnveSlrkadittlve.......kdtrPHeltrryaeflsslvtlsv..tvkeeeverller 445
                 ++lillWP+Fq+++d+++e lrk  it++            +PHelt+++++flssl+ l+   t+k e+ + +++ 
  CCD22857.1 468 DQLILLWPKFQQLIDSQCENLRKVSITKNLTskkhnsnLLAKPHELTVQFGKFLSSLLLLAKrtTYKSENASVNYND 544
                 ****************************9999999999999*******************96225566666666665 PP

  == domain 2  score: 41.5 bits;  conditional E-value: 1.7e-14
       Vps52 434 vkeeeverllerlqreveslilrlaklfkkkkeqlvfLinNYdlllgvLkelsldlskeqedfqeklne 502
                 +++e++e+l+++++r +++++++++k++k+++++++fL+ NY +l+++L ++ l+ + ++ d +ek+++
  CCD22857.1 575 ITDERSEPLYNSIIRIRNDFETVMTKCSKSTQSPERFLSLNYLYLYNILLKQRLETQHDEDDINEKNEQ 643
                 67899**************************************************99999999998865 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.0   0.00047       2.1     162     242 ..     534     646 ..     475     671 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00047
       BUD22 162 eeeeeeesdkeeesedsedeekeeseddeeeeeededdedaee................................deedeeaeerelaqydglla.... 224
                 ++e+  +++ +++++++ d  +++s+d+++++++d+ d+d+++                                +      + +++       +    
  CCD22857.1 534 KSEN-ASVNYNDSNSTATD--MNTSNDNNDNDDDDDADDDDDDmitderseplynsiirirndfetvmtkcskstQ------SPERFL------Slnyl 617
                 2222.23333333333333..1222222222222222222222233344445555555555555444443322220......111111......12222 PP

       BUD22 225 ...........sddededeyneetdeess 242
                            + ++ded+ ne++++ +s
  CCD22857.1 618 ylynillkqrlETQHDEDDINEKNEQVES 646
                 33344444555333333322222222222 PP

>> TMEM174  Transmembrane protein 174
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.3   0.00089         4     175     232 ..     531     588 ..     527     590 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00089
     TMEM174 175 tiypldnaafvedeessaalavdsenerssesaeeleekaleeeasdelsPPsYeeif 232
                 t y  +na+   ++++s+a++++++n++  ++++   ++ +++  +de s P Y+ i 
  CCD22857.1 531 TTYKSENASVNYNDSNSTATDMNTSNDNNDNDDDDDADDDDDDMITDERSEPLYNSII 588
                 57999******************9999999999998889899999*********9986 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.3   0.00011       0.5      29      90 ..     514     581 ..     501     630 .. 0.57
   2 ?   -1.5   0.6       0.4   1.8e+03      71      86 ..     631     646 ..     622     671 .. 0.47

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
      FAM176  29 gvcvGLllt.Lcllviriscrkdle.....rlkkkkkklkeesekasededeeeeeeeedsseseaee 90 
                  v +G +l+ L+ll  r +++++        ++ + ++ +++++++++d+d++ +++++d  ++e +e
  CCD22857.1 514 TVQFGKFLSsLLLLAKRTTYKSENAsvnynDSNSTATDMNTSNDNNDNDDDDDADDDDDDMITDERSE 581
                 56677666525566666666666554433112222222222222234444444444444444444333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.4
      FAM176  71 dedeeeeeeeedsses 86 
                 ++de++ +e+++++es
  CCD22857.1 631 QHDEDDINEKNEQVES 646
                 2222222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1459  (0.0813765); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 4844.93
//
Query:       CCD22858.1  [L=764]
Description: hypothetical protein NDAI_0A07040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-46  158.7  53.1    2.6e-46  158.7  53.1    3.2  2  YL1       YL1 nuclear protein
    7.4e-13   48.0   0.6    1.3e-12   47.3   0.6    1.4  1  YL1_C     YL1 nuclear protein C-terminal domain


Domain annotation for each model (and alignments):
>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7  53.1   2.9e-50   2.6e-46       1     239 [.      17     284 ..      17     289 .. 0.83
   2 ?  -13.2  20.0         2   1.8e+04      71     115 ..     306     364 ..     296     512 .. 0.66

  Alignments for each domain:
  == domain 1  score: 158.7 bits;  conditional E-value: 2.9e-50
                 xxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxx.xxxxxxxx.. RF
         YL1   1 RarRstAGnrlkkLleqeee..........edelellFaEeedDeefeseeeeeeee.........................nsDsdf.dsdeedee.. 61 
                 R+rRs+AGn+lk+Lleqe++          ede++llF+E++dDe+fe+  ++eee+                          +D+d+  s++edee  
  CCD22858.1  17 RKRRSNAGNKLKSLLEQELQdlqiktqqfdEDEIDLLFQEDADDEDFEARLQQEEEDteqseegehegqkksskqsekstdyEEDEDLmLSESEDEEie 115
                 89**********************************************99888888899***********************66666554555555667 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  62 sdeeedeeegekelerqerkkrkkekkkrkaqkkkskkkkkkqkkkkkkkidp...qakep..rpkkkseraswlpaeslltpkrRkssRastvenkeq 155
                 ++++ed+e+gekel+ qer ++    kkr ++++++          +k++i+p   +   +    kkk+   + ++ae+ll ++rR+s+R+s+v+nk q
  CCD22858.1 116 GSNNEDNEAGEKELQLQERLRK----KKRISKQRAPPVIV------RKRQIKPvsgED--EvlTIKKKRPSYDYINAETLLHTDRRTSKRSSVVANKLQ 202
                 99999999**************....66654433333333......333466653322..2244444444556999999*9999*************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxx RF
         YL1 156 leerlkereerrkkilermrkkaarkkkkkkerplTQeerLaeAketEeeNlksLnryeeqEeekkkeqraklaalkrrkl.....gpv 239
                 ++++l+++eerrk+i+er++k+++ +k+ ++   lTQe+r++ A+etE+ N+ sL++y++qE+ kk  q+ +la+++r+k+       +
  CCD22858.1 203 VYAKLSKAEERRKEIQERIKKHKEAQKH-HI---LTQEDRMRIALETEKSNILSLDKYKQQEITKK--QS-RLAMQQRQKMkftpeDVI 284
                 **********************999555.77...********************************..66.7899**999977664444 PP

  == domain 2  score: -13.2 bits;  conditional E-value: 2
                 xxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................x RF
         YL1  71 gekelerqerkkr...kkekkkrkaqkkkskkkkkkqkkkkkkkidp................q 115
                  + +l+r  +kk+   +++ kkr ++  + +++     +++++++                  +
  CCD22858.1 306 WDDQLQRRDKKKKkypRRQTKKRIQK--IEEQNL--TPTTSETTA-HssnngiteiknedaseN 364
                 44567766666664332222222222..111111..111111111.122333334444443330 PP

>> YL1_C  YL1 nuclear protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.6   1.4e-16   1.3e-12       2      29 .]     700     727 ..     699     727 .. 0.97

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 1.4e-16
       YL1_C   2 CdITGlpAkYrDPkTgLpYanveaykvI 29 
                 C IT++ ++Y+DPk+g+pY+++eayk+I
  CCD22858.1 700 CLITNKDCQYFDPKNGIPYSDLEAYKII 727
                 **************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2553  (0.142395); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.33s 00:00:01.28 Elapsed: 00:00:00.50
# Mc/sec: 4616.90
//
Query:       CCD22859.1  [L=235]
Description: hypothetical protein NDAI_0A07050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.3e-39  133.6  26.0      7e-39  133.2  26.0    1.1  1  Snf7           Snf7
     0.0013   17.7  17.7     0.0038   16.2  17.9    1.7  1  Fmp27_WPPW     RNA pol II promoter Fmp27 protein domain
     0.0044   17.3   3.9     0.0044   17.3   3.9    2.5  2  DUF5082        Domain of unknown function (DUF5082)
  ------ inclusion threshold ------
      0.011   16.1   4.6      0.011   16.1   4.6    3.6  3  CLZ            C-terminal leucine zipper domain of cyclic nuc
       0.17   11.4  14.3       0.23   11.0  14.3    1.3  1  Exonuc_VII_L   Exonuclease VII, large subunit
       0.17   11.9   3.9       0.39   10.7   3.8    1.7  1  DUF3969        Protein of unknown function (DUF3969)
       0.54   10.6  19.9      0.053   13.8   4.2    3.9  3  KxDL           Uncharacterized conserved protein
       0.64    8.9   9.4       0.74    8.7   9.4    1.2  1  LMBR1          LMBR1-like membrane protein
        0.9    9.9  24.3        5.2    7.4  22.6    2.5  2  YlqD           YlqD protein
        0.9    9.7  22.0        1.3    9.2   7.5    2.3  2  Fib_alpha      Fibrinogen alpha/beta chain family
        1.1    9.5   4.6        2.7    8.2   0.5    2.3  2  DUF2703        Domain of unknown function (DUF2703)
        1.1    9.1  18.6          1    9.1  16.1    1.9  2  SKA1           Spindle and kinetochore-associated protein 1
        1.5    8.8  18.3      0.051   13.6   9.1    2.3  2  Serine_rich    Serine rich protein interaction domain
        3.1    8.0  20.9       0.16   12.1  13.4    2.2  2  Tropomyosin_1  Tropomyosin like
        4.1    7.7  23.4       0.07   13.3  13.4    2.6  3  FliJ           Flagellar FliJ protein
        6.7    6.8  17.8       0.48   10.5   5.5    2.8  2  DUF1664        Protein of unknown function (DUF1664)
        7.8    4.9  13.8       0.41    9.1   1.5    2.0  2  Corona_S2      Coronavirus S2 glycoprotein
        9.6    4.7  14.2        6.1    5.3  11.3    1.8  2  FapA           Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.2  26.0     7e-42     7e-39       1     168 [.      19     199 ..      19     212 .. 0.92

  Alignments for each domain:
  == domain 1  score: 133.2 bits;  conditional E-value: 7e-42
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-...........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Snf7   1 eairsLrkaerkldkkqeslekkikkleaelkklakkgn...........kdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamk 88 
                 e+ +++++a++ l+++ ++l+++i++l+ +l+  +kk +           +++al+lL+++k++e+++d+ldnq+++++q++++ +nlk+++ ++na+k
  CCD22859.1  19 ESSQAMNQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSssksklgqkplRQQALKLLNKRKQLESMRDSLDNQSWSMTQAQMTSDNLKNTMVTVNALK 117
                 67899**************************9999998888889999**************************************************** PP

                 HHHHHHHHHHHCTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-..GGTTHHHHHHHHHHHHHHHHHCSH.HHHHHHHTX CS
        Snf7  89 qgakamkamnkkvdidkidklmdeiedqmekaeeisEalsrsldda..deedEeeleaeLdaLeqelgdeelldesvklpev 168
                 q++ka+ka++ k+++dk+++++de+ d +e+ +e++++ls++  +   d++dE el+aeLdaL++e + + +++ + + p++
  CCD22859.1 118 QTNKALKAQYGKINLDKLQDMQDEMLDLIEQGDELQDILSSNAMTDdiDDIDESELDAELDALAEEDLTDMMQEFETETPQM 199
                 ***************************************988654458******************9999988555555554 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2  17.9   3.8e-06    0.0038     152     267 ..       7     115 ..       2     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.8e-06
  Fmp27_WPPW 152 FgnektHdCilgkendpervqkelleeRleeleeqiekleekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesseeeesks 250
                 +gn+k+Hd +l+++ +  +  ++ l++R+++l++qi++l+ +l+++++k ++  +++k   + l++++ +l +k++ le++ ++l++++ s ++ ++  
  CCD22859.1   7 YGNKKSHDQMLQESSQAMNQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSS--SKSKLGQKPLRQQALKLLNKRKQLESMRDSLDNQSWSMTQAQM-- 101
                 68***********9999999999*****************************..6788888899999999999999999999999999875443333.. PP

  Fmp27_WPPW 251 kelsaastsesfselde 267
                    ++ + ++++ +++ 
  CCD22859.1 102 ---TSDNLKNTMVTVNA 115
                 ...33333333333333 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   3.9   4.4e-06    0.0044      62     119 ..       6      64 ..       1      67 [. 0.93
   2 ?   -0.7   6.3       1.6   1.6e+03      31      82 ..      77     130 ..      65     183 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.4e-06
     DUF5082  62 Gk.eennydgirsnlessyqtyvdkldelidaieeEIerLenqiseaqgvldtlqsqln 119
                 G  +++++d+ +++  +++++ ++ l + ++++++ I++L  q+++ q++l++++s+l+
  CCD22859.1   6 GYgNKKSHDQMLQESSQAMNQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKSKLG 64 
                 5558999*************************************************986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
     DUF5082  31 eaktklsdekeslkqkkkklekplnssesWkGk.eennydgirs.nlessyqty 82 
                   +++l++   sl+++  ++++  ++s+++k++  + n   +    l+ +y ++
  CCD22859.1  77 NKRKQLESMRDSLDNQSWSMTQAQMTSDNLKNTmVTVNALKQTNkALKAQYGKI 130
                 345555555555555555555555555555555433222222222444444333 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.1   4.6   1.1e-05     0.011      12      63 ..      14      65 ..      12      69 .. 0.93
   2 ?   -1.0   2.5       2.3   2.3e+03      26      55 ..      99     128 ..      74     151 .. 0.54
   3 ?    0.6   1.1      0.77   7.7e+02      35      63 ..     172     201 ..     138     204 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-05
         CLZ 12 dglLDeeaakagaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkq 63
                d +L e+ ++ ++ q+ l+++v++L++++ +L+ +l+ + ++++ss++kL q
  CCD22859.1 14 DQMLQESSQAMNQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKSKLGQ 65
                88999997777799************************************87 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.3
         CLZ  26 qkeleekverLessLeaLqtrlarLlaeye 55 
                 ++ + +++++   +++aL++  + L a+y 
  CCD22859.1  99 AQMTSDNLKNTMVTVNALKQTNKALKAQYG 128
                 334444444444444444444444444443 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.77
         CLZ  35 rLessLeaLq.trlarLlaeyessqrkLkq 63 
                 +L+++L+aL    l  +++e+e+   ++  
  CCD22859.1 172 ELDAELDALAeEDLTDMMQEFETETPQMGD 201
                 577777777514577788888777766655 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  14.3   0.00023      0.23     143     257 ..      14     131 ..       8     195 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00023
  Exonuc_VII_L 143 aeleeqleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.k.....ekleekkerlk 233
                   ++++++ ++++++ ++ +++++++  +++++l+ +l++ +++l++++++l +  + l++ ++ +l +kr++le+++++l +     ++ + ++++lk
    CCD22859.1  14 DQMLQESSQAMNQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKSKLGQ--KPLRQ-QALKLLNKRKQLESMRDSLdNqswsmTQAQMTSDNLK 107
                   4444555555555555555555555555555555555555555555555555..44444.3344667777888888777554433333333333333 PP

  Exonuc_VII_L 234 klkerlelleekkerleeleekle 257
                   ++   ++ l++++++l+++  k++
    CCD22859.1 108 NTMVTVNALKQTNKALKAQYGKIN 131
                   333333356666666666555554 PP

>> DUF3969  Protein of unknown function (DUF3969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.8   0.00039      0.39      41      87 ..     132     174 ..      96     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00039
     DUF3969  41 lelieelelsdelveiihkgmeLEDvesliPeeLedsIdeielkcle 87 
                 l+++   +++de++++i++g eL D+ s   +++ d Id+i+ + l 
  CCD22859.1 132 LDKL--QDMQDEMLDLIEQGDELQDILS--SNAMTDDIDDIDESELD 174
                 4444..3578****************77..56999999999765554 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   4.2   5.4e-05     0.053      27      81 ..      12      66 ..       7      67 .. 0.92
   2 ?   -0.4   6.1       1.4   1.4e+03       2      47 ..      82     131 ..      76     155 .. 0.65
   3 ?    1.0   0.0      0.52   5.1e+02      34      54 ..     176     196 ..     169     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.4e-05
        KxDL 27 kknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkaklakk 81
                +  ++L+e  + +++  + l++r+ q  + +++++ +L++i+kk++s k+kl +k
  CCD22859.1 12 SHDQMLQESSQAMNQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKSKLGQK 66
                5679**********************************************99875 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.4
        KxDL   2 ltsavdsedldeilalQaqt.sgrlnkkn...reLlelnalsqerlaklr 47 
                 l+s+ ds d ++   +Qaq+ s+ l+++    + L++ n+ +++++ k++
  CCD22859.1  82 LESMRDSLDNQSWSMTQAQMtSDNLKNTMvtvNALKQTNKALKAQYGKIN 131
                 56677777777777777774366777765222445666666666666554 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.52
        KxDL  34 elnalsqerlaklrarfkqgt 54 
                 el al++e l+++ ++f+  t
  CCD22859.1 176 ELDALAEEDLTDMMQEFETET 196
                 6789999**********9987 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   9.4   0.00074      0.74     194     314 ..      34     162 ..       6     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00074
       LMBR1 194 iksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdp.lrkyleeilkkvPeeiaeklks....nenkteeslaklekqlika.... 283
                   s+ld ++++l+f++++++++++ ++ +l    k ++++  ++ ++ + l+++ + + +++ +  + ++ s    n + t ++l++ +k+l+ +    
  CCD22859.1  34 RVSQLDTQISQLNFQLQTIQKKLSSSKSKLG--QKPLRQQALKLLNKRKqLESMRDSLDNQSWSMTQAQMTSdnlkNTMVTVNALKQTNKALKAQygki 130
                 4788999999999999999999999997777..444444444433333325555555555555555555555555577789999999999998888888 PP

       LMBR1 284 .lqkrertekqwkrllekalelediiknkssk 314
                  l k ++ ++++  l+e+  el+di+++++ +
  CCD22859.1 131 nLDKLQDMQDEMLDLIEQGDELQDILSSNAMT 162
                 8************************9998765 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  22.6    0.0052       5.2      19      83 ..      25      93 ..      15     164 .. 0.75
   2 ?   -1.8   4.7       3.8   3.8e+03      36     113 ..     113     153 ..      91     202 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0052
        YlqD 19 eelqqqlqaqieqldkelqqLefqakrlikeikkqsaq.qieeiqeqvek...ekserlekkkqllqql 83
                +++qq lq++++qld++++qL+fq++ + k++++ + +  ++ +++q+ k   ++++++  +++l++q 
  CCD22859.1 25 NQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKSKlGQKPLRQQALKllnKRKQLESMRDSLDNQS 93
                6899************************99998866667455555554431103333333444444444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.8
        YlqD  36 lqqLefqakrlikeikkqsaqqieeiqeqvekekserlekkkqllqqleqvqkLelgsevkqgqveslvevkvGDnle 113
                 ++ L++  k l ++  k + ++ + +q+                                     e l  +++GD+l+
  CCD22859.1 113 VNALKQTNKALKAQYGKINLDKLQDMQD-------------------------------------EMLDLIEQGDELQ 153
                 3333333333333333333333333332.....................................2222333333333 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   7.4     0.016        16      73     125 ..      11      63 ..       7      78 .. 0.66
   2 ?    9.2   7.5    0.0013       1.3      34     115 ..      79     160 ..      68     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  73 kdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdi 125
                 k +d+++++ss+ +++ ++ l++++++  ++i +L   l++ ++k++  +++ 
  CCD22859.1  11 KSHDQMLQESSQAMNQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKSKL 63 
                 33577777777777777777777777766777777777766666666555444 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0013
                 CHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHCCCHHHHHHHCCHHHHHHHHHHHHHHH CS
   Fib_alpha  34 kkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikkssk.eleeeilrlketidaqesnirvLqnvlesne 115
                 +k+le+++++l++ s s ++a+ ++ ++k+++   ++ k+ n+ +  ++ k +l+ + +++++++ + +++  +Lq++l+sn 
  CCD22859.1  79 RKQLESMRDSLDNQSWSMTQAQMTSDNLKNTMVTVNALKQTNKALKAQYGKiNLD-KLQDMQDEMLDLIEQGDELQDILSSNA 160
                 689*******************************999999998888888662677.************************985 PP

>> DUF2703  Domain of unknown function (DUF2703)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.5    0.0027       2.7      12      56 ..      18      62 ..      11      93 .. 0.82
   2 ?    3.1   0.3       0.1     1e+02      16      77 ..      97     158 ..      87     175 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0027
     DUF2703 12 getCercgeTgktleeavkelkeaLealgievelekvelseeela 56
                +e  + ++++++ l++ v++l +++++l+++++  +++ls+ + +
  CCD22859.1 18 QESSQAMNQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKSK 62
                567788999999*********************999999887654 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.1
     DUF2703  16 ercgeTgktleeavkelkeaLealgievelekvelseeelareflesntilingrpleell.g 77 
                 ++ + T ++l++ + +++  L++++ +++ +  +++ ++l+    e   +  +g +l+++l  
  CCD22859.1  97 TQAQMTSDNLKNTMVTVNA-LKQTNKALKAQYGKINLDKLQDMQDEMLDLIEQGDELQDILsS 158
                 5566777777777777765.7777777777777777677766666777777888888888743 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  16.1     0.001         1       4     108 ..      16     117 ..      15     148 .. 0.72
   2 ?   -0.9   0.0       1.2   1.2e+03       5      54 ..     152     200 ..     149     225 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.001
                 XXXX................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1   4 elrelvslrainqdpallkedlskieaevsaleellnklkkelqeeeeaikk..lkkeieaslkqqeklqhlkenlpshlpkktaassaeeskssspee 100
                 +l+e  ++   nq ++ l++ +s++++++s+l+ +l+ ++k l + ++ + +  l+++  + l++ ++l+ +++ l ++  + t+a+ ++++    ++ 
  CCD22859.1  16 MLQESSQAM--NQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKSKLGQkpLRQQALKLLNKRKQLESMRDSLDNQSWSMTQAQMTSDNL---KNT 109
                 788877766..9999999*************************9988876442278888888988888*******999966666665553333...332 PP

                 XXXXXXXX CS
        SKA1 101 eeeteskk 108
                  ++ ++ k
  CCD22859.1 110 MVTVNALK 117
                 33233332 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.2
                 XXX................XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX CS
        SKA1   5 lrelvslrainqdpallkedlskieaevsal.eellnklkkelqeeeeaik 54 
                 l++++s     +++++   d s+++ae+ al ee l ++ +e ++e+ ++ 
  CCD22859.1 152 LQDILSSN--AMTDDIDDIDESELDAELDALaEEDLTDMMQEFETETPQMG 200
                 55544444..66777777777788888888734557777777777666554 PP

>> Serine_rich  Serine rich protein interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   9.1   5.1e-05     0.051      35     116 ..      21     102 ..      18     111 .. 0.88
   2 ?   -0.1   1.6      0.81   8.1e+02      67     106 ..     112     152 ..     108     181 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.1e-05
  Serine_rich  35 kenleanlqeirlavdrlrtslrefleFargalanaaklsdknlqtk.LrkqlqkledsdqilqetsqeLdsceWslealasd 116
                  ++ +++  q +++ v++l t + ++ +F  +++    ++s ++l +k Lr+q  kl ++++ l++++++Ld+++Ws+++   +
   CCD22859.1  21 SQAMNQAQQGLQQRVSQLDTQISQL-NFQLQTIQKKLSSSKSKLGQKpLRQQALKLLNKRKQLESMRDSLDNQSWSMTQAQMT 102
                  678999999*************995.8999999999999999997766****************************9876554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.81
  Serine_rich  67 lanaaklsdknlqtkLrk.qlqkledsdqilqetsqeLdsc 106
                  ++na k ++k l+++  k  l+kl+d ++ + +  ++ d+ 
   CCD22859.1 112 TVNALKQTNKALKAQYGKiNLDKLQDMQDEMLDLIEQGDEL 152
                  67777777777777665434555555554444444443333 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  13.4   0.00016      0.16      17     125 ..      15     128 ..       8     145 .. 0.79
   2 ?   -1.1   2.3       1.9   1.9e+03      45      69 ..     171     196 ..     129     205 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00016
  Tropomyosin_1  17 eeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiql..LEeeleesdkkLke...ttekLretd 107
                    + l+e+ ++++q ++   q +++L ++++ql+ ++ ++++kl+ +k+k+ ++  +++    l+++ ql  + + l++ + ++++   t + L++t 
     CCD22859.1  15 QMLQESSQAMNQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKSKLGQKPLRQQALKLLNKRKQLesMRDSLDNQSWSMTQaqmTSDNLKNTM 110
                    55788899999999999**********************************999999999999887643478889987766654222788999999 PP

  Tropomyosin_1 108 vkaeelERkvkaLeqerd 125
                    v+ + l +  kaL ++  
     CCD22859.1 111 VTVNALKQTNKALKAQYG 128
                    999988888888877654 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.9
  Tropomyosin_1  45 qqleeevekl.eeklkeakekaeese 69 
                    ++l++e++ l ee+l++++++ e ++
     CCD22859.1 171 SELDAELDALaEEDLTDMMQEFETET 196
                    45667777643667777777776655 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3  13.4   7.1e-05      0.07      27     104 ..      12      85 ..       8      92 .. 0.90
   2 ?    1.5   1.6      0.33   3.3e+02      20      66 ..      81     125 ..      79     146 .. 0.62
   3 ?   -0.7   0.3       1.6   1.6e+03      20      31 ..     134     145 ..     113     163 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.1e-05
        FliJ  27 yrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerkklekLkerekkeeq 104
                  ++++ ++ s+++     ++++ +q+  s+ld++i+q+  +l+  +k+++ +++++ ++  ++++l++L +r++ e  
  CCD22859.1  12 SHDQMLQESSQAM----NQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKSKLGQKPLRQQALKLLNKRKQLESM 85 
                 5677777788888....888999**************************************************98865 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.33
        FliJ  20 kleeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkq 66 
                 +le++++ +++ + ++ ++   ++  +l+n+    +al+++ + +k 
  CCD22859.1  81 QLESMRDSLDNQSWSMTQA--QMTSDNLKNTMVTVNALKQTNKALKA 125
                 4444444444443333333..47788888877777777776555554 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.6
        FliJ  20 kleeleqyrqey 31 
                 kl+ +++++ ++
  CCD22859.1 134 KLQDMQDEMLDL 145
                 333333333333 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.5   0.00048      0.48      48      97 ..      15      64 ..      10      85 .. 0.83
   2 ?   -1.5   7.2       2.5   2.5e+03      38      76 ..     105     140 ..      65     194 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00048
     DUF1664 48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredls 97
                + l++ s++++++++ L++r+ ++d+++ + +   + i++++++ +++l 
  CCD22859.1 15 QMLQESSQAMNQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKSKLG 64
                56888999999999999999999999999999999999999998888775 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.5
     DUF1664  38 slsdavesvskqleqvseslaatkrhLssridrvdkkld 76 
                 +l++ + +v + l+q  ++l+a+  ++  ++d++++ +d
  CCD22859.1 105 NLKNTMVTV-NALKQTNKALKAQYGKI--NLDKLQDMQD 140
                 222222222.12222222222222221..2233333333 PP

>> Corona_S2  Coronavirus S2 glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   5.8      0.14   1.4e+02     263     313 ..      15      65 ..       8      82 .. 0.81
   2 ?    9.1   1.5   0.00041      0.41     430     518 ..      87     179 ..      69     195 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.14
                 HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHSHHTTSSHSHHHHHHHHSCH CS
   Corona_S2 263 eglatvatalakiqdvvnkqgqalnelvaqlsknfgaissviqdiydrldk 313
                 + l+  ++a+++ q  ++++   l + ++ql+  +++i   ++   ++l +
  CCD22859.1  15 QMLQESSQAMNQAQQGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKSKLGQ 65 
                 778999999999999999999999999999999999998888877777765 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00041
                 ...ESSSE.EEESSSEEEBE....XBSTSEEEE.EESSSSSSEEESXXBXSSGGGCCXXXXXXXXXXXXSXXXXXHHHHTTHHHHHHHHHHHHHH CS
   Corona_S2 430 kqlngkyy.itardmyePri....itasdvvqi.enCdvvfvninkteldtlvpeyidvneelqkllenykpnvelpdldkfnatvlnltseidr 518
                   l+++++ +t+ +m + ++    +t + + q  ++ ++++++in  +l+ +++e++d+ e+ ++l +    n    d+d ++++   l+ e+d 
  CCD22859.1  87 DSLDNQSWsMTQAQMTSDNLkntmVTVNALKQTnKALKAQYGKINLDKLQDMQDEMLDLIEQGDELQDILSSNAMTDDIDDIDESE--LDAELDA 179
                 4589999999999998876511103333333331346899**************99888665555533344555666777776664..3455554 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  11.3    0.0062       6.1     333     422 ..      29     118 ..      16     142 .. 0.70
   2 ?    0.3   2.0      0.21   2.1e+02     333     365 ..     121     154 ..      96     204 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0062
        FapA 333 pelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelk.elkeelesk..keea.kikvnke 422
                 + l++++++l++++ +l+ +l++++kk+++ ++ k  +  ++  ++q  kll+++++l++   +l+++     ++++ s   k+    +++ k+
  CCD22859.1  29 QGLQQRVSQLDTQISQLNFQLQTIQKKLSSSKS-KL-G--QKPLRQQALKLLNKRKQLESMRDSLDNQSWsMTQAQMTSDnlKNTMvTVNALKQ 118
                 67889999*******************888887.33.2..245778888888888888888888888876566777776643222233333344 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.21
        FapA 333 pelkekl.keleeeleeleeeleklkkkikklpk 365
                 ++lk+++ k   ++l+++++e+ +l ++ ++l++
  CCD22859.1 121 KALKAQYgKINLDKLQDMQDEMLDLIEQGDELQD 154
                 3333333322333333333333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2766  (0.154275); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        48  (0.00267723); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.47
# Mc/sec: 1509.93
//
Query:       CCD22860.1  [L=213]
Description: hypothetical protein NDAI_0A07060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-84  282.0   0.0    2.1e-84  281.8   0.0    1.0  1  DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
  ------ inclusion threshold ------
       0.16   11.1   0.0       0.24   10.5   0.0    1.2  1  PLU-1          PLU-1-like protein


Domain annotation for each model (and alignments):
>> DHBP_synthase  3,4-dihydroxy-2-butanone 4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.8   0.0   2.4e-88   2.1e-84       1     192 []       9     207 ..       9     207 .. 0.97

  Alignments for each domain:
  == domain 1  score: 281.8 bits;  conditional E-value: 2.4e-88
                    HHHHHHHHTT--EEEESSTTTT-BEEEEEEGGG--HHHHHHHHHHB-S--EEEEEHHHHHHTT--BSSS......S-SSTT---BB--EEESST-S CS
  DHBP_synthase   1 eeaiealkaGkfvivvDdedrenegdLiiaAekvtpekvafmirhasGlicvalteeradeLeLplmve......enedkhktaftvsvdaaegtt 90 
                    ee+ie++k++kfviv+Dde+renegdLi+a ++vtpe++af++rh+sG++c+++t+e ad+L+Lpl+ +       ++d+h+ta+t++vd+aegtt
     CCD22860.1   9 EEVIEHFKQNKFVIVMDDESRENEGDLICAGQNVTPEHIAFLVRHSSGYVCTPMTNEYADRLDLPLLRTgmkyesYDDDRHGTAYTITVDVAEGTT 104
                    689****************************************************************986666666669***************** PP

                    SS-SHHHHHHHHHHHH-TT--GGGEEEEEEEEEEEE-TTGGGTS-SHHHHHHHHHHHTTS-SBEEEEEBB-TT.SCB-BHHHHHHHHHHHT-EEEE CS
  DHBP_synthase  91 TGIsaaDRalTirkladpkakpedfrrPGhvfplrareggvleRrghTEaavdLarlaglkpaavicellndd.gtmarrdeleefakkhglkiit 185
                    TGIsa+DRalT+++la+++ak++df +PGh++plra +ggvl+RrghTEaavdL++l+gl+p++vicel+nd+ g+m+r+d++++f k++++++it
     CCD22860.1 105 TGISAHDRALTCKHLANSEAKATDFLKPGHICPLRAVDGGVLKRRGHTEAAVDLCQLSGLNPVGVICELVNDHdGSMMRLDDCVKFGKEFNIPLIT 200
                    ***********************************************************************88799******************** PP

                    HHHHHHH CS
  DHBP_synthase 186 iedliey 192
                    iedl++y
     CCD22860.1 201 IEDLAKY 207
                    ****998 PP

>> PLU-1  PLU-1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.7e-05      0.24     130     165 ..     177     212 ..     170     212 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 2.7e-05
       PLU-1 130 edssieeleklieeGksfnvelpeleeLkkvleqlk 165
                 +d s   l++++  Gk+fn+ l  +e+L k+leq k
  CCD22860.1 177 HDGSMMRLDDCVKFGKEFNIPLITIEDLAKYLEQHK 212
                 45668899*************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1653.21
//
Query:       CCD22861.1  [L=768]
Description: hypothetical protein NDAI_0A07070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.053   13.5   1.1       0.11   12.5   1.1    1.5  1  Ole-e-6   Pollen allergen ole e 6


Domain annotation for each model (and alignments):
>> Ole-e-6  Pollen allergen ole e 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.1     6e-06      0.11      10      24 ..     648     662 ..     641     663 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6e-06
     Ole-e-6  10 tseGnGytfCemKCd 24 
                  ++G+G tfC+m C+
  CCD22861.1 648 DDAGQGMTFCAMSCE 662
                 579***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1206  (0.0672653); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.91
# Mc/sec: 2537.93
//
Query:       CCD22862.1  [L=330]
Description: hypothetical protein NDAI_0A07080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-24   83.4   0.1    1.8e-23   82.5   0.1    1.5  1  SLD5_C    DNA replication complex GINS protein SLD5 C-terminu
    1.2e-09   38.6   1.2    1.9e-07   31.5   0.8    2.5  2  Sld5      GINS complex protein
  ------ inclusion threshold ------
      0.035   14.4   0.9      0.092   13.1   0.4    2.0  2  Vhr1      Transcription factor Vhr1


Domain annotation for each model (and alignments):
>> SLD5_C  DNA replication complex GINS protein SLD5 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   0.1     3e-27   1.8e-23       1      56 []     258     330 .]     258     330 .] 1.00

  Alignments for each domain:
  == domain 1  score: 82.5 bits;  conditional E-value: 3e-27
      SLD5_C   1 PdldkfVFvrv...................gkdvgtvtieelgedgdvelekGdiyvvRYsvvkdlvesGkveLI 56 
                 Pd++kfVF++v                   +k++++vti+el+ed  vel++++iyv+RY+v++dl++ GkveLI
  CCD22862.1 258 PDWNKFVFIHVvgppdgnlekdsslttnefNKYCYSVTIPELKED--VELTINSIYVMRYEVIRDLLKAGKVELI 330
                 9********************************************..***************************9 PP

>> Sld5  GINS complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.8   3.2e-11   1.9e-07       2      93 ..      92     198 ..      91     224 .. 0.76
   2 !    5.1   0.0     0.005        30      27      87 ..     239     323 ..     227     329 .. 0.87

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 3.2e-11
                 EEEHH...HHHHHHHTTSCCCHHCHHHCHHHHHHCCCHHTTS.......SSSTTTTTTHHHHH.................HHHHHHHT.HCHHHHHHHH CS
        Sld5   2 eLPlW...laelLkrqrrveieppewlspesleailedetks.......sdlpslpphflela.................vkllelardldelkrllrd 73 
                 eL+++   l+++++ + + ++e  e++s+  le+ +++ +++                    a                 + ll+++++++++k+++r+
  CCD22862.1  92 ELLPFpheLMKRMMSRIQEQMEYIENISMGFLENDHTHYSDHspqdrnkL------------AtdddpvatrmnsnhdskLPLLCMEAEIERVKFVIRS 178
                 78888777888888999999999999999999999999999955555440............334444445555555554559999999999******* PP

                 HHHHHHHHHHHTHCHHHHHH CS
        Sld5  74 llevRlakirkfaenledaa 93 
                 ++++Rl+ki+kf+ +l +  
  CCD22862.1 179 FIRCRLSKIDKFSLYLRQLK 198
                 ****************9998 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.005
                 HHHHHHCCCHHTTS...........................SSSTTTTTTHHHHHHHHHHHHT.HCHHHHHHHHHHHHHHHHHHHTHC CS
        Sld5  27 pesleailedetks...........................sdlpslpphflelavkllelardldelkrllrdllevRlakirkfae 87 
                 p +l+ai++ e ++                           s l++ +++ +  +v++ el +d   +   ++++   R + ir++++
  CCD22862.1 239 PTELQAINDTEGSVnmieepdwnkfvfihvvgppdgnlekdSSLTTNEFNKYCYSVTIPELKED---VELTINSIYVMRYEVIRDLLK 323
                 77899999999999999999999999999999999999999999999****************9...888899999999999998775 PP

>> Vhr1  Transcription factor Vhr1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.5   9.1e+03      43      53 ..     109     119 ..     100     143 .. 0.53
   2 ?   13.1   0.4   1.5e-05     0.092      22      67 ..     177     223 ..     170     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.5
        Vhr1  43 seqdeeikkia 53 
                  eq e i++i+
  CCD22862.1 109 QEQMEYIENIS 119
                 34555555554 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.5e-05
        Vhr1  22 krfssrrLeLidkleLsekkaseqdeeikkiaeiL.rtefeypeetl 67 
                 + f+  rL  idk++L  ++  e d++i ++ eiL r+e ey e+ +
  CCD22862.1 177 RSFIRCRLSKIDKFSLYLRQLKEDDTNIISLDEILsREELEYHERHF 223
                 78999*****************************9678999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2288.99
//
Query:       CCD22863.1  [L=1170]
Description: hypothetical protein NDAI_0A07090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.021   14.6   0.1      0.021   14.6   0.1    2.4  2  Dimer_Tnp_hAT  hAT family C-terminal dimerisation region


Domain annotation for each model (and alignments):
>> Dimer_Tnp_hAT  hAT family C-terminal dimerisation region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.7      0.83   1.5e+04      45      78 ..     314     348 ..     310     350 .. 0.77
   2 ?   14.6   0.1   1.2e-06     0.021      21      61 ..    1069    1109 ..    1047    1124 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 0.83
                    TS-S-TTTTHHHHHHT.HHHHH-TTT---HHHHHH CS
  Dimer_Tnp_hAT  45 sipvssaasErsFstl.gkvllesrnsleplnvea 78 
                    s p++s ++  + s +   +++e  ns  p + e 
     CCD22863.1 314 SSPMTSSNNVTYNSSRfNTSVNEDANSTAPTSAEL 348
                    77999999988888877888888888888777765 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.2e-06
                     -HHHHHHHTTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTH CS
  Dimer_Tnp_hAT   21 dvlewwkensskyPnlsklardvLsipvssaasErsFstlg 61  
                         +w +n++++P+l  la  +L    ss   +r+Fs +g
     CCD22863.1 1069 RYFTYWMKNKNSFPTLAALALHLLYTKGSSIDIDRVFSMSG 1109
                     55679*********************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1258  (0.0701657); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.26s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 8264.40
//
Query:       CCD22864.1  [L=685]
Description: hypothetical protein NDAI_0A07100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-49  167.3   5.1    3.2e-47  160.5   0.1    4.0  3  CPL             CPL (NUC119) domain
     0.0036   16.9   5.4         12    5.9   0.0    5.8  6  PUF             Pumilio-family RNA binding repeat
  ------ inclusion threshold ------
       0.15   12.2   6.3       0.84    9.9   0.1    4.9  6  SAC3            Leucine permease transcriptional regulator he
        2.2    6.4  32.6          4    5.5  32.6    1.4  1  Nop14           Nop14-like family


Domain annotation for each model (and alignments):
>> CPL  CPL (NUC119) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.02        89      49      99 ..     170     217 ..     169     250 .. 0.85
   2 ?    2.9   0.2     0.029   1.3e+02      57      97 ..     363     403 ..     350     425 .. 0.79
   3 !  160.5   0.1   7.2e-51   3.2e-47       2     142 ..     453     596 ..     452     597 .. 0.99

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.02
         CPL  49 kELleaispallsaiaknaeellsdnlgsqfvaevLlsaegdkqeaieaia 99 
                 kE +e++s+++ ++ ++ +++l+++  +s +v+ +++++++ ++e i   +
  CCD22864.1 170 KEVREKLSNEIWELSKNCISDLVMKHDASRVVQTLVKYSTKARREQI---I 217
                 799999999999999999*******************9999877544...3 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.029
         CPL  57 pallsaiaknaeellsdnlgsqfvaevLlsaegdkqeaiea 97 
                  ++++++ ++++el+++  gs + + ++ +a+ ++++++ +
  CCD22864.1 363 SEMIELLHEQFAELVHTPEGSEVACTLIAKANAKERKLLVR 403
                 46899999******************999999988866533 PP

  == domain 3  score: 160.5 bits;  conditional E-value: 7.2e-51
         CPL   2 dkygRrvllYllsgrdgryfspeviklLkegdelakktSKKdaevRrkELleaispallsaiaknaeellsdnlgsqfvaevLlsaegdkq........ 92 
                 dkygRr+++Y+l g++g+yf+p+v+k+L+++ ++a+ tSKK++ ++r+ELl+++sp++l++i+k ++e+ls+nlgsqf++evL ++e ++q        
  CCD22864.1 453 DKYGRRPWIYILLGLNGKYFAPNVKKELSKYLAMAELTSKKPTSQKRQELLNKFSPMYLKTISKYYSEILSENLGSQFISEVLINDELYEQlgekdkav 551
                 9**********************************99************************************************************** PP

         CPL  93 ..eaieaiaklakgdlvaeekdeelhliekpfgsrlLKaLiqgdeekwenke 142
                   ++i++i++++kgd     ++ee h+i++p+++rlLK+Liqg+  kw+nk 
  CCD22864.1 552 fvQIIDRIITSFKGD-----ISEESHPIHRPYSTRLLKSLIQGG--KWNNKD 596
                 ***************.....************************..****86 PP

>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.17   7.5e+02       1      13 [.     175     187 ..     175     189 .. 0.87
   2 !    4.2   0.0    0.0085        38      15      35 .]     197     217 ..     197     217 .. 0.89
   3 ?   -0.3   0.0      0.24   1.1e+03       1      17 [.     219     235 ..     219     251 .. 0.80
   4 ?    1.8   0.0     0.052   2.3e+02       6      34 ..     260     289 ..     255     290 .. 0.79
   5 !    5.9   0.0    0.0026        12       2      16 ..     405     419 ..     404     421 .. 0.90
   6 ?    0.1   0.0      0.17   7.8e+02       2      15 ..     443     456 ..     442     456 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.17
                 HHGGGHHHHHTST CS
         PUF   1 sikgnlvqLstdq 13 
                 ++++++++Ls+++
  CCD22864.1 175 KLSNEIWELSKNC 187
                 5899*******96 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0085
                 HHHHHHHHHHHSCHHHHHHHH CS
         PUF  15 GnyvvQkllehateeqkklil 35 
                 +++vvQ+l +++t+  +++i+
  CCD22864.1 197 ASRVVQTLVKYSTKARREQII 217
                 69*********9999998886 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.24
                 HHGGGHHHHHTSTTHHH CS
         PUF   1 sikgnlvqLstdqyGny 17 
                 s+kg+  +L+t  yG y
  CCD22864.1 219 SLKGKYYVLATSAYGKY 235
                 58999*********955 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.052
                 HHHHHTSTTHHHHHHHHHHH.SCHHHHHHH CS
         PUF   6 lvqLstdqyGnyvvQklleh.ateeqkkli 34 
                 l +L+ ++ G+yvv+ l    at eq++++
  CCD22864.1 260 LRKLMRHREGAYVVEDLYVLyATQEQRQQM 289
                 5689999*******9877777777777776 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0026
                 HGGGHHHHHTSTTHH CS
         PUF   2 ikgnlvqLstdqyGn 16 
                 +k++ ++L+++ +Gn
  CCD22864.1 405 LKDHTEKLIKNEHGN 419
                 79************9 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.17
                 HGGGHHHHHTSTTH CS
         PUF   2 ikgnlvqLstdqyG 15 
                  k++l++ ++d+yG
  CCD22864.1 443 VKEHLQDFIIDKYG 456
                 689**********9 PP

>> SAC3  Leucine permease transcriptional regulator helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00019      0.84       9      45 ..     188     224 ..     181     226 .. 0.77
   2 ?   -1.0   0.0      0.48   2.1e+03      31      43 ..     246     258 ..     234     281 .. 0.72
   3 ?    0.3   0.1      0.18   8.3e+02      28      49 ..     280     301 ..     249     305 .. 0.75
   4 ?   -1.5   0.0      0.67     3e+03      20      43 ..     385     407 ..     367     408 .. 0.67
   5 ?   -1.6   0.0      0.69   3.1e+03      12      42 ..     475     507 ..     471     508 .. 0.71
   6 ?   -1.6   0.1      0.72   3.2e+03      40      54 ..     521     535 ..     518     540 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00019
                 HHH.HHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHH CS
        SAC3   9 iqd.vVdselekilknllkeenrknerkqiIdsLseeL 45 
                 i+d v+++  ++++++l+k+ + k +r+qiI+sL+   
  CCD22864.1 188 ISDlVMKHDASRVVQTLVKYST-KARREQIINSLKGKY 224
                 5551566778999999999998.88*********9765 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.48
                 ..HHHHHHHHHHH CS
        SAC3  31 knerkqiIdsLse 43 
                 kn r+ iI++L  
  CCD22864.1 246 KNSRQVIINELHG 258
                 6677777777754 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.18
                 HH...HHHHHHHHHHHHHHHHH CS
        SAC3  28 enrknerkqiIdsLseeLydAF 49 
                  +++++r+q+++++    y AF
  CCD22864.1 280 YATQEQRQQMVREFWGAEYAAF 301
                 4567799999998888777777 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.67
                 HHHHHHHHHH...HHHHHHHHHHH CS
        SAC3  20 ilknllkeenrknerkqiIdsLse 43 
                 +  +l+ + n  +erk++++ L++
  CCD22864.1 385 VACTLIAKAN-AKERKLLVRALKD 407
                 4445566666.7899999998875 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 0.69
                 HHHHHHHHH..HHHHHHHHH...HHHHHHHHHH CS
        SAC3  12 vVdseleki..lknllkeenrknerkqiIdsLs 42 
                  V++el+k+  + +l +++ + ++r+++ +++s
  CCD22864.1 475 NVKKELSKYlaMAELTSKKPTSQKRQELLNKFS 507
                 589999999534455555667889998888876 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 0.72
                 HHHHHHHHHHHHHHH CS
        SAC3  40 sLseeLydAFihEkl 54 
                  Lse+L + Fi+E+l
  CCD22864.1 521 ILSENLGSQFISEVL 535
                 59999999****986 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  32.6   0.00089         4     313     420 ..      26     143 ..       6     192 .. 0.47

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00089
       Nop14 313 e............asaDdldddfvleeeeeeeefglgkglkataeeeeeededdfeedddlveseseeee...eeeeedeeeeedeeeeeeeeededdl 396
                 +             s D  +d+ +l++ +++++   g+g +    +e++ d+dd +e dd v+s s+++e   +  +++eee++d+ee+e+++++++d 
  CCD22864.1  26 KsinkkakisvesSSSD--EDEDELDQLDDDSA-SSGSGSA----SESSSDDDDADELDDIVSSASDVNEddlDHLDNNEEESNDDEEGEDQDKEDEDG 117
                 01222223445334444..45555665555553.3355553....223333333334444566666654432333333333333333333222222222 PP

       Nop14 397 sdleseeeeeedeleeel..leeekk 420
                 +++e+ e++ +d+ +e+   l+e+k 
  CCD22864.1 118 ERTEDGEKSTSDNHTEQRklLKERKM 143
                 22222233333332222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1621  (0.0904122); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.33s 00:00:01.29 Elapsed: 00:00:00.48
# Mc/sec: 4252.01
//
Query:       CCD22865.1  [L=602]
Description: hypothetical protein NDAI_0A07110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.4e-136  453.4  32.7   1.1e-135  453.0  32.7    1.2  1  Sugar_tr  Sugar (and other) transporter
    1.4e-31  109.7  38.0    1.2e-30  106.6  32.4    2.1  2  MFS_1     Major Facilitator Superfamily
      6e-06   25.0   6.9      6e-06   25.0   6.9    1.6  1  TRI12     Fungal trichothecene efflux pump (TRI12)
     0.0028   16.1   0.6     0.0028   16.1   0.6    1.8  2  MFS_3     Transmembrane secretion effector
  ------ inclusion threshold ------
       0.13   11.7   0.1       0.59    9.7   0.0    2.1  2  VQ        VQ motif


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.0  32.7  3.1e-139  1.1e-135       2     450 ..     102     556 ..     101     558 .. 0.95

  Alignments for each domain:
  == domain 1  score: 453.0 bits;  conditional E-value: 3.1e-139
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 ++va+++g++fgYdtg+i+++l ++++  ++++ ++ + ke       ++++++++Ga+i+s+fag+++d+fGRk++l++++v+f+iga+lq+ a+   
  CCD22865.1 102 TFVASISGFMFGYDTGYISSALISIGTDLDNKVLSYGD-KE-------IVTAATSLGALISSIFAGTAADVFGRKPCLMFSNVMFIIGAILQISAH--- 189
                 89*******************************99985.43.......9***********************************************... PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylv 199
                 +++++++gR+++G+gvG+ s ++P++isEiApk++Rg+l++++ l++t G+l+a+++g+glnk++n  gwril+gl+l+p+++++ +++flP++Pry+v
  CCD22865.1 190 KFWQMAAGRLIMGFGVGIGSLISPLFISEIAPKMIRGRLTVINSLWLTGGQLIAYGCGAGLNKVHN--GWRILVGLSLIPTVIQFTFFCFLPDTPRYYV 286
                 9*****************************************************************..******************************* PP

                 HTT-HHHHHHHHHH..HHHCHHHHHHHHHHHHHHHHHHH........HTTHHHHSH......HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHH CS
    Sugar_tr 200 ekgkeeeakevlak..lrgeedadrelaeekdsleaeqeee...kaswkellsskt...vrqrlligvvlqifqqltGinaimyysptifenlglsksl 290
                 +kg+ e ak+vl++  ++++++  ++ +ee ++l+++   +      w+++++ +t   ++++l+i+++lq++qq+tG+n++my+s tife++g+s+s 
  CCD22865.1 287 MKGNLEMAKKVLRRsyVDTSDEIIEKKVEELAMLNQSIPGKnagVRVWNTVKELHTnpaNFRALIIACGLQAIQQFTGWNSLMYFSGTIFETVGFSNSS 385
                 **************999999******************999998566777777666667**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHH.......HHHHHHHHHHHH..HHHHTTSS.........CHHHHHHHHHHHHHHHTTTTHHHHHHHH CS
    Sugar_tr 291 lvtiivgvvnfvatfvaiflvdrfGRRtllllG.......aagmaicfvilgivalllvaks......kaasivaivfialfialfalgwgpvpwvlvs 376
                 +v+iiv+ +nf++t++a+f +d++GRR++ll+G       +a++ai+f+++g + ++++++       ++++iv+ivfi++f+a++alg+g+vpw   s
  CCD22865.1 386 AVSIIVSGTNFIFTLIAFFAIDKIGRRYILLIGlpgmtvaLAICAIAFHFIG-IKFVGNEAVvshsgfTSWGIVIIVFIIVFAAFYALGIGTVPWQQ-S 482
                 *********************************7777777777777788887.77777777688899*****************************9.* PP

                 HHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGG CS
    Sugar_tr 377 ElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeiee 450
                 Elfpq+vR++++++a+a+nw  +++i+ +f +++++i+ +++f++fag+  l+++f++f++pe  g++lee++ 
  CCD22865.1 483 ELFPQNVRGIGTSYATATNWAGSLVIASTFLTMLQNITPTGTFAFFAGVSFLSTVFCYFCYPELSGLELEEVQS 556
                 ***********************************************************************986 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6  32.4   3.5e-34   1.2e-30       2     351 ..     106     507 ..     105     509 .. 0.85
   2 !    8.7  10.8    0.0002      0.73      81     174 ..     452     545 ..     445     581 .. 0.81

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 3.5e-34
       MFS_1   2 llaaflsalarsilgpalplalaedlg...ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqG 96 
                 ++++f+ +++ + +++al   +++dl    +s     +++++ +lga+++s+++G  +d fGr+++l+++ ++f++g ++l ++ + +w ++++r+++G
  CCD22865.1 106 SISGFMFGYDTGYISSALI-SIGTDLDnkvLSYGDKEIVTAATSLGALISSIFAGTAADVFGRKPCLMFSNVMFIIG-AILQISaHKFWQMAAGRLIMG 202
                 5899**************9.9******88888888999***************************************.6666544************** PP

       MFS_1  97 lgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeee...... 188
                 +g g++  ++  +i++++pk+ rgr + + s+    G +++++ g+ l   + gWr +  +  i +++ f  f+++lp++p+    k   e        
  CCD22865.1 203 FGVGIGSLISPLFISEIAPKMIRGRLTVINSLWLTGGQLIAYGCGAGLNkVHNGWRILVGLSLIPTVIQFT-FFCFLPDTPRYYVMKGNLEMAkkvlrr 300
                 *************************************************99******************99.567887777777777666666788888 PP

       MFS_1 189 ..........................kgtgpaplvpawkallkdpvlwillialllf.....ffgfsglltllplylqevlglsglllaglllallalv 256
                                           k  g + + +  k+l+++p  + +li++++      f+g+++l++++ ++  e+ g+s+  +a+  + +++  
  CCD22865.1 301 syvdtsdeiiekkveelamlnqsipgKNAGVRVWNT-VKELHTNPANFRALIIACGLqaiqqFTGWNSLMYFSGTI-FETVGFSN-SSAV--SIIVSGT 394
                 888888888888888889999998888888888888.********5543333333333577788888899999996.99999993.5555..7777777 PP

       MFS_1 257 gailallagrlsdrlgrrrrlllallllllaalglallavt.................ssavllll..vlvl.iGfglgfvfpsllalasdlappeeag 335
                 ++i+ l+a + +d++grr +ll++l+++++a++++a++ ++                 +  +++++  v+++ +  ++++  +++  + s+l+p++ +g
  CCD22865.1 395 NFIFTLIAFFAIDKIGRRYILLIGLPGMTVALAICAIAFHFigikfvgneavvshsgfT--SWGIViiVFIIvFAAFYALGIGTVPWQQSELFPQNVRG 491
                 777777777777*****************************************988532..3333322333334447777799999************* PP

       MFS_1 336 tasglfntagslggal 351
                   +++++ ++ +g+++
  CCD22865.1 492 IGTSYATATNWAGSLV 507
                 9999999888777766 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0002
       MFS_1  81 fasslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpe 174
                 f +s+  +++v+ ++ ++++++++ ++    +++fp++ rg ++++++a++ +G+++ +     +++++  +++f ++a+vs+l+ v+ ++ +pe
  CCD22865.1 452 F-TSWGiVIIVFIIVFAAFYALGIGTVPWQQSELFPQNVRGIGTSYATATNWAGSLVIASTFLTMLQNITPTGTFAFFAGVSFLSTVFCYFCYPE 545
                 4.67777788999999999999999999999************************888788788889********************65555443 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   6.9   1.7e-09     6e-06      43     229 ..     104     291 ..      60     409 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.7e-09
       TRI12  43 vasfaafslnvvatyfvlqasasalpnilqdvgqsensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtll 141
                 vas+++f +    t ++  a  s   ++ + v    ++ ++++  ++g  +s +  g  +d fgr+p ++ + ++ ++gai+  +a kf  + a   ++
  CCD22865.1 104 VASISGFMFGYD-TGYISSALISIGTDLDNKVLSYGDKEIVTAATSLGALISSIFAGTAADVFGRKPCLMFSNVMFIIGAILQISAHKFWQMAAGRLIM 201
                 566666655443.3344455555555555555556667788888899************************************************9999 PP

       TRI12 142 gvaagpag.asplfvgelmsnktkflgllivsipvvvtsglspy..lgqrla.iqgswrwifyiyiitsaiavllivvwyyppsfaqlhgkk 229
                 g   g     splf+ e+  +     g l+v      t g       g  l  +   wr ++ + +i + i  ++       p +  ++g+ 
  CCD22865.1 202 GFGVGIGSlISPLFISEIAPKMI--RGRLTVINSLWLTGGQLIAygCGAGLNkVHNGWRILVGLSLIPTVIQFTFFCFLPDTPRYYVMKGNL 291
                 9999865427*******987654..4777776666655554333024555542677899999999999999888888877777777777753 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.6   7.7e-07    0.0028      49     117 ..     142     209 ..     134     228 .. 0.76
   2 ?   -1.7   0.2      0.19     7e+02      59      99 ..     396     437 ..     378     456 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.7e-07
       MFS_3  49 lvqaaatLPifllsilaGalaDnfdrRkvllavqlllalvsvlltvl.aalgllspwlllaltlligiGa 117
                 +v aa++L  ++ si+aG  aD f r+  l+   ++ +++++l ++   + ++ +  l+++  + +giG+
  CCD22865.1 142 IVTAATSLGALISSIFAGTAADVFGRKPCLMFSNVMFIIGAILQISAhKFWQMAAGRLIMG--FGVGIGS 209
                 799************************9999888888777765443313445555555555..5556654 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.19
       MFS_3  59 fllsilaGalaDnfdrRkvllavqlllalv.svlltvlaalg 99 
                 f+++++a    D++ rR +ll++   + ++ +++++ + ++g
  CCD22865.1 396 FIFTLIAFFAIDKIGRRYILLIGLPGMTVAlAICAIAFHFIG 437
                 788888888899999999999988766544155555555555 PP

>> VQ  VQ motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00016      0.59       7      17 ..     340     350 ..     339     350 .. 0.93
   2 ?   -1.7   0.0      0.61   2.2e+03      19      23 ..     360     364 ..     360     367 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
          VQ   7 vhtdasnFRal 17 
                 +ht+++nFRal
  CCD22865.1 340 LHTNPANFRAL 350
                 69*******98 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.61
          VQ  19 QrLTG 23 
                 Q++TG
  CCD22865.1 360 QQFTG 364
                 9**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1529  (0.0852808); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 4103.43
//
Query:       CCD22866.1  [L=467]
Description: hypothetical protein NDAI_0A07120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-31  108.1   1.8    1.6e-31  108.1   1.8    2.5  3  Sec20         Sec20
     0.0024   17.9   3.7     0.0024   17.9   3.7    2.6  2  Mucin         Mucin-like glycoprotein
  ------ inclusion threshold ------
        1.9    7.5  19.6        3.5    6.7  19.6    1.3  1  SprA-related  SprA-related family
        8.9    6.4  24.7       0.14   12.2  11.5    3.3  3  4_1_CTD       4.1 protein C-terminal domain (CTD)


Domain annotation for each model (and alignments):
>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2   5.3e+03      33      45 ..      32      44 ..       8      57 .. 0.74
   2 !  108.1   1.8   3.5e-35   1.6e-31       2      92 .]     206     296 ..     205     296 .. 0.99
   3 ?   -2.4   0.4         1   4.5e+03      11      25 ..     399     413 ..     368     433 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
       Sec20 33 astkslekleeey 45
                 st+++ + eeey
  CCD22866.1 32 DSTRNIVEEEEEY 44
                5777777777777 PP

  == domain 2  score: 108.1 bits;  conditional E-value: 3.5e-35
       Sec20   2 qakqiTeslraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglflacvvyvvkkRi 92 
                 ++k++T++l +++q+l+++++qS++nl+el+++tk l +++++y+q+e++++ ++klvk+le++++++k++v++alg++++c+++v+++Ri
  CCD22866.1 206 TTKKLTNNLIKSNQILQSGILQSDLNLDELKQQTKYLMTIDDKYTQFESIFHSTNKLVKTLEKASHQEKRDVYFALGFLICCISWVLWRRI 296
                 789***************************************************************************************8 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1
       Sec20  11 raisqllsqevqqSe 25 
                  a+s+ ++++++ S+
  CCD22866.1 399 TAGSNNIVETTDDSQ 413
                 223333333333333 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   1.8      0.11   4.9e+02      41      58 ..     187     201 ..      52     220 .. 0.61
   2 !   17.9   3.7   5.3e-07    0.0024      36      98 ..     326     408 ..     277     428 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.11
       Mucin  41 gqskltttttttkppttt 58 
                 g+   +t   tt  +t  
  CCD22866.1 187 GKRTVRT---TTMITTKD 201
                 2211111...11111111 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 5.3e-07
       Mucin  36 veaaegqskltttttttkppttttttt.....................tasttittkttkattttttttttttateaPsdavtt 98 
                 +++++g +++  ++  ++++tt+tt++                      +s  i+t  t   tt+ tt tttt+t   ++ v t
  CCD22866.1 326 MSSSKGTENSIISSAQVRATTTATTASsieeadmtispsiisiqssnyKSSGVISTMITSIETTSLTT-TTTTTTAGSNNIVET 408
                 344445555555555555555555555689999999999***99998745555555544444333333.333333333333444 PP

>> SprA-related  SprA-related family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  19.6   0.00078       3.5       6     142 ..     334     457 ..     326     465 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00078
  SprA-related   6 gaaiasvsdvsltgLageestiadklefvssdtrsvasvvsstnsssvdatisdatsinstvktardatasastsesgsvsdtikpssaeqanekad 102
                   ++ i+s ++v  t+ a + s i +  ++     +s++s+ ss  +ss       +t i+s   t+  +t++++t++s+++ +t   s  +   ++ d
    CCD22866.1 334 NS-IISSAQVRATTTATTASSIEEADMT---ISPSIISIQSSNYKSSGV----ISTMITSIETTSLTTTTTTTTAGSNNIVETTDDSQFQ---NQED 419
                   33.5555555555555555555555454...458999999999988877....46899999999999999999999****9998877666...5667 PP

  SprA-related 103 faaifgqeeesasaakekeqqkkdeqsqqerekvaqeqkq 142
                   f +    + e   a++e+  +  +eq+q+++++ +q+++q
    CCD22866.1 420 FESNTDRALE--DAVNEAMGRILEEQEQEQQKQKQQQENQ 457
                   7776666666..7888888888888877777666666655 PP

>> 4_1_CTD  4.1 protein C-terminal domain (CTD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.4     0.069   3.1e+02      24      53 ..     172     200 ..     147     223 .. 0.68
   2 ?   -0.4   1.6      0.27   1.2e+03      16      44 ..     322     350 ..     313     355 .. 0.70
   3 ?   12.2  11.5   3.1e-05      0.14       9      88 ..     355     435 ..     349     438 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.069
     4_1_CTD  24 adedpgvlvsaqtitsetesttTtThitKt 53 
                 +de++  +++ +   + ++++ TtT it  
  CCD22866.1 172 NDENDTRILNNK-NNNGKRTVRTTTMITTK 200
                 444444444444.45566777777767643 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.27
     4_1_CTD  16 eksevdanadedpgvlvsaqtitsetest 44 
                  ++++++ + ++++++ saq  ++ t +t
  CCD22866.1 322 VSKQMSSSKGTENSIISSAQVRATTTATT 350
                 55677777888888888888777666655 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 3.1e-05
     4_1_CTD   9 etktityeksevdan.adedpgvlvsaqtitsetesttTtThitKtvkggisETriEkrivitgdadiDhdkaLaqaikea 88 
                 e+  +t++ s ++ + ++ +++ ++s+ + + et+s tTtT  t    ++i+ET  + +   ++d +   d+aL++a++ea
  CCD22866.1 355 EEADMTISPSIISIQsSNYKSSGVISTMITSIETTSLTTTTTTTTAGSNNIVETTDDSQFQNQEDFESNTDRALEDAVNEA 435
                 66678888887777756667777889999999******9999999999*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2611  (0.14563); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3238.24
//
Query:       CCD22867.1  [L=1184]
Description: hypothetical protein NDAI_0A07130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.82   10.3   0.0       0.82   10.3   0.0    4.1  4  Ipi1_N    Rix1 complex component involved in 60S ribosome mat


Domain annotation for each model (and alignments):
>> Ipi1_N  Rix1 complex component involved in 60S ribosome maturation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.9      0.14   2.5e+03      68      85 ..     316     333 ..     295     347 .. 0.44
   2 ?   -2.1   0.2      0.33   5.9e+03      51      63 ..     666     678 ..     587     712 .. 0.52
   3 ?   -0.2   0.1     0.087   1.6e+03      33     100 ..     944    1002 ..     938    1003 .. 0.54
   4 ?   10.3   0.0   4.5e-05      0.82      23      84 ..    1027    1093 ..    1026    1106 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.14
      Ipi1_N  68 skgstsakatsssssskk 85 
                 ++g++++++t ++++ ++
  CCD22867.1 316 KTGTSTSTNTNTNTNTNT 333
                 222222221122221111 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.33
      Ipi1_N  51 ktLnnflallgws 63 
                 k ++  l+ l+ +
  CCD22867.1 666 KFIKAKLQNLNEK 678
                 3333333333332 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.087
      Ipi1_N   33 LdllLevapeelvssawvktLnnflallgwskeksskgstsakatsssssskktskksrlkvLsvlak 100 
                  L++ + + ++     ++ k L+++ +l+ ++   +s++  ++  +s++ +    +kk + + ++ ++k
  CCD22867.1  944 LKIKISYDKDF---AKFNKFLKSIKNLFQHN---GSSNLANE--DSNNNNDVV-NKKLKQQIFKEIEK 1002
                  55555555555...34778888888888884...33333332..233333333.66666666665555 PP

  == domain 4  score: 10.3 bits;  conditional E-value: 4.5e-05
      Ipi1_N   23 pdIredslkfLdllLevapeelvssa.....wvktLnnflallgwsk....eksskgstsak.atssssssk 84  
                  +d + ds   Ld+lL++   ++++s+     ++++L++++++ g++k    e    ++  +  + +ss ss+
  CCD22867.1 1027 SDLQYDSETHLDILLKYNDYLSIESYltstnFMEVLTHYISMSGKEKvdanE----HELPKGeG-TSSPSSS 1093
                  57899***********88777555544445699************9864442....33332221.2222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2034  (0.113447); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 8357.29
//
Query:       CCD22868.1  [L=393]
Description: hypothetical protein NDAI_0A07140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0064   17.4   0.8     0.0064   17.4   0.8    2.1  2  Ribosomal_L18_c  Ribosomal L18 C-terminal region


Domain annotation for each model (and alignments):
>> Ribosomal_L18_c  Ribosomal L18 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.8   3.5e-07    0.0064      35      89 ..      11      63 ..       7      68 .. 0.93
   2 ?   -3.0   0.1      0.84   1.5e+04      67      86 ..     330     349 ..     312     352 .. 0.55

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.5e-07
  Ribosomal_L18_c 35 yikkgieaddleelykkahaaIredpvkkekkekkevkkeskkykkkkltleqrk 89
                     y +++i+ d + ++ +ka +a  ++p++  k + k+++++s++ ++++ ++++rk
       CCD22868.1 11 YSSNNITKDFISDILAKALEATSKNPKR--KTSLKDYDQHSSSANRRQFNRNKRK 63
                     899***********************98..8899999999999999999999997 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.84
  Ribosomal_L18_c  67 ekkevkkeskkykkkkltle 86 
                      ++k+ ++  k+ ++ kl+le
       CCD22868.1 330 NTKKNSDLLKNSNTVKLNLE 349
                      22222233455666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1405  (0.0783647); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2949.30
//
Query:       CCD22869.1  [L=127]
Description: hypothetical protein NDAI_0A07150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0016   18.4   1.2     0.0018   18.2   1.2    1.1  1  DUF5569       Family of unknown function (DUF5569)
  ------ inclusion threshold ------
      0.092   12.8   0.6       0.16   12.0   0.6    1.5  1  Complex1_LYR  Complex 1 protein (LYR family)


Domain annotation for each model (and alignments):
>> DUF5569  Family of unknown function (DUF5569)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   1.2   2.1e-07    0.0018     136     204 ..      27      97 ..      19     117 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.1e-07
     DUF5569 136 dtkGrqlansmlqratayqrsGhleskdin.qeelkaleevelklkgnflt.qrettvaGanhthtlygha 204
                 +   r l  s +q   a ++s   +s++ + q e+k leev + lk n +   +ettva       ++ + 
  CCD22869.1  27 NNDTRMLVASRVQMREAMRNSSTKNSNETEiQHEIKHLEEVAILLKRNVVQgVKETTVADSKYHLNIHKDI 97 
                 556788999999999999999999999886599***************986369*****988777777665 PP

>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.6   1.8e-05      0.16       2      51 ..      10      62 ..       9      73 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
  Complex1_LYR  2 qvLsLYRalLRea.rkfpdyn.treyfrrriRdeFrknkhvt.Dpekieellk 51
                  ++L+ YR+ LR++   f +++ +   +r + R+  r     + ++ +i++ +k
    CCD22869.1 10 RALRAYRHGLRATkIAFNNDTrMLVASRVQMREAMRNSSTKNsNETEIQHEIK 62
                  89***********4556666675555577777777775553336666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1353  (0.0754643); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 942.17
//
Query:       CCD22870.1  [L=330]
Description: hypothetical protein NDAI_0A07160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-51  174.1  23.7    4.2e-51  173.8  23.7    1.1  1  HlyIII    Haemolysin-III related


Domain annotation for each model (and alignments):
>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8  23.7   2.4e-55   4.2e-51       1     224 []      88     315 ..      88     315 .. 0.91

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 2.4e-55
      HlyIII   1 fslhnEtlniwtHllgailfivla..illlslaevken...sklakvvvlvfllgallcllcSalyHtlsihseeklrkffaklDysgIslliagsylp 94 
                 f l+nEt+ni+tHl++ i+++++   +++++++++ ++   s  + +v+ +f+lga++cll+S+++H+l+ hs+ k  ++++klDy+gI++li +s++p
  CCD22870.1  88 FYLNNETINIYTHLIPSIIYLIVSltFIFINFIAIPKFpttSVIDYIVINIFILGAFTCLLLSSCFHCLKQHSF-KQCTLWSKLDYIGIIILISCSIIP 185
                 6789************98876555124444445555557778899*****************************.9*********************** PP

      HlyIII  95 lilyalakapkagllylslilalgvlgiisklvplfsrpearplravlfillgllgvipllhlllvltqlgeaa.elalvllvlggvlylvGavfYalr 192
                 ++++ ++++  +  ++++l+  +++++ i+ l  +f+ p +rplra lf+l+ + g+ip+++ +++++ +g  + ++ l +++l++++y++G+++Y++r
  CCD22870.1 186 ILYFGYFDRLSYFKFFTILTFSFAIVCSIIVLNEKFDLPSYRPLRAGLFMLFSFTGLIPMITGFYIFGYKG-VMeRISLNFVLLEAIFYIIGTLLYGFR 283
                 **************************************************************666666556.555************************ PP

      HlyIII 193 vPErlkpgkfdivghsHqiFHvfvvlgalfhy 224
                 +PE++kpg+fd++g+sHqiFH+fvvlg+++h+
  CCD22870.1 284 IPETFKPGNFDMFGSSHQIFHIFVVLGSICHF 315
                 *******************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1031  (0.0575046); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2526.09
//
Query:       CCD22871.1  [L=443]
Description: hypothetical protein NDAI_0A07170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.1e-164  548.3  19.0   1.2e-164  548.2  19.0    1.0  1  ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
    9.5e-07   28.6   1.0    9.5e-07   28.6   1.0    1.9  2  DUF1295     Protein of unknown function (DUF1295)


Domain annotation for each model (and alignments):
>> ERG4_ERG24  Ergosterol biosynthesis ERG4/ERG24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  548.2  19.0  1.4e-168  1.2e-164       2     432 .]       7     443 .]       6     443 .] 0.96

  Alignments for each domain:
  == domain 1  score: 548.2 bits;  conditional E-value: 1.4e-168
  ERG4_ERG24   2 eieyefggeigalgikiglpvlelylnaiskfealklllpksldlaelkneikeldllvfegaiwerklftvfllfyvlqavlylllpGkvveGleLsn 100
                 ++++efgg+ g++ ++i lp+l ++ln++++ ++ ++  ++++ + e  ++i   + l    ++++++++t +l++++  +v++++lpGk ++G eL++
  CCD22871.1   7 TTKFEFGGPLGVTVLTIFLPILSVVLNELIRSDYYIKGIFQNFSINETLKNITPFSSLLQ--LTFNKQVWTYYLTWFISLLVFDTILPGKYMNGCELRD 103
                 789*************************************************99665444..469********************************** PP

  ERG4_ERG24 101 gkkLkYkinalas...lllvlaillvlqvtelfeltvlidnfvqlisvailfafalaivlYvrslkvkerkkd.......kqlaaggvsGnliYDffiG 189
                 g+kL Ykin++ +   l+l+l++++ l+ + ++el++l+d+  +l+ v+i+faf+l+i++Y  s++   + k        k la+gg+sGnliYD+fiG
  CCD22871.1 104 GTKLTYKINGISMvtlLILILSVRWNLTNGTMPELQFLYDHILELCLVTIVFAFILSIYCYAVSFIPLLGSKRngqdgkeKVLAVGGNSGNLIYDWFIG 202
                 ***********99988889999*******************************************98766554467788899***************** PP

  ERG4_ERG24 190 reLnPRlg..slDlkmFlelRlgllllllinlaallkqykl.ygkvtdslllvllaqllYvfdgvkneeavlttmDittdgFGFmLaFgdlvlvPftYs 285
                 reLnPR+   ++D+kmF+elR+g+ll+llinl++l+++y +  g+++d+lllv+++q++Y+fdgv+nee+vl++mDittdgFGFmLaFgdl++vPftYs
  CCD22871.1 203 RELNPRFFfnIIDIKMFCELRPGMLLWLLINLSCLHHHYLMnDGEINDALLLVNILQAFYIFDGVLNEEGVLSMMDITTDGFGFMLAFGDLTFVPFTYS 301
                 ******9777*****************************87259******************************************************* PP

  ERG4_ERG24 286 lqtlYLsvhPselgwstvlvailvvlligyyiFrsansqknnFRtnPedpklkllkyiqtktGskLlvsGWyglarkinYlgDwlqslswsLatgfqsv 384
                 lq++YLsv+P++lg++   + i  +++igyyiF+s+n qk+nFR    ++kl++lk+iqtk+G+kLl++GW++++++inY+gDwl+slsw+L+t+fq++
  CCD22871.1 302 LQARYLSVSPITLGYT-RCILISTIMCIGYYIFHSSNMQKSNFR----QGKLENLKSIQTKRGTKLLCDGWWSKSQHINYFGDWLISLSWCLTTWFQTP 395
                 ***************9.7**************************....*************************************************** PP

  ERG4_ERG24 385 lpyfyvlyFlvlLvhRelRDeekCkkkYGedweeYkkkvpykiipyvy 432
                 l+y+y++yF++lL+hR+ RDeekC++kYG+ weeY++kvpykiipyvy
  CCD22871.1 396 LTYYYSIYFATLLMHRQIRDEEKCHAKYGKSWEEYQRKVPYKIIPYVY 443
                 ***********************************************9 PP

>> DUF1295  Protein of unknown function (DUF1295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4      0.11   9.5e+02      48     135 ..      72     156 ..      54     162 .. 0.65
   2 !   28.6   1.0   1.1e-10   9.5e-07     125     235 .]     323     434 ..     284     434 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.11
     DUF1295  48 vlWglRLalhllrrtlkkgeDkryeelrkelgktiallsllvvfvlQavllylvalpvllaaaskeeqalkaldviglalwlvgivle 135
                  +W   L++++   ++++    +y +  +  + t   +  +++  + +v l+++ l+v    ++++ ++l+ l    l+l+lv iv++
  CCD22871.1  72 QVWTYYLTWFISLLVFDTILPGKYMNGCELRDGT---KLTYKINGISMVTLLILILSVRWNLTNGTMPELQFLYDHILELCLVTIVFA 156
                 5666666666666666666666666555544333...334556677777777777777766666666677766666677777777775 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.1e-10
     DUF1295 125 lalwlvgivlealaDqQlsaf........kkdpankgk.vldsGLwrysRHPNYfgealiWwglflialealeglealaiagpllltlllvfvsgipll 214
                 ++++ +g  +   +  Q+s+f        k+  + +g  +l +G w+ s H NYfg++li ++ +l ++ ++         + +    ll++   i+  
  CCD22871.1 323 STIMCIGYYIFHSSNMQKSNFrqgklenlKSIQTKRGTkLLCDGWWSKSQHINYFGDWLISLSWCLTTWFQTPLT---YYYS-IYFATLLMHRQ-IRDE 416
                 345566777778899******999988887777777766999**************************9995554...3333.55566666666.8877 PP

     DUF1295 215 EkkalkkykdkeeyreYqkkt 235
                 E k   ky+  ++++eYq+k+
  CCD22871.1 417 E-KCHAKYG--KSWEEYQRKV 434
                 7.5555676..7899999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3234.59
//
Query:       CCD22872.1  [L=437]
Description: hypothetical protein NDAI_0A07180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-76  257.2  19.9    2.8e-76  256.8  19.9    1.2  1  CTP_transf_1    Cytidylyltransferase family
  ------ inclusion threshold ------
      0.066   13.3   0.1       0.14   12.2   0.1    1.4  1  Pro_3_hydrox_C  L-proline 3-hydroxylase, C-terminal


Domain annotation for each model (and alignments):
>> CTP_transf_1  Cytidylyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.8  19.9   3.2e-80   2.8e-76       2     266 .]      47     379 ..      46     379 .. 0.98

  Alignments for each domain:
  == domain 1  score: 256.8 bits;  conditional E-value: 3.2e-80
                   HHHHHHHHHHHHHHHTTTSH.HHHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHH....HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHHHHH---. CS
  CTP_transf_1   2 qRvitalvlilivliilllgglvflllvavvvilalkElirlvrlkkrekrllll.llslvlllllllflylesliallklvlllvlvllllvlkvl 97 
                   +R+ ++l++i+ ++ii+  g++++++l+++++i++++E+i++++++ rek+l+l+ +l++++l++++++l + s+  +++  l ++ + ++ +    
    CCD22872.1  47 VRTFWTLIMIAGFFIIIGSGHIWCVILILGCQIAVFSECIAVTSASGREKNLPLTkTLNWYFLFTTIYYLNGLSFLSFFQRRLSFFEYKIIAII--- 140
                   69******************************************************************************99888887666554... PP

                   ..HHHHHHHHHHHHHHHHHTHHHH............................TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---B-S-TT CS
  CTP_transf_1  98 kskskklervilallallyvvlll...........................qslllienikeglllvllllalvvaaDigaYffGklfGktkllpki 167
                       ++ +++i+++++++++vl++                           q +l+++n  +g++++ll++ lv+++Di+aY++G++fG+t  l++i
    CCD22872.1 141 ----ATNHKFICYCFYVIGFVLFVcslrkgflkfqfaslcvthmalllvvfQGHLIMNNLLNGIIWFLLPCGLVIVNDIFAYLCGITFGRT-KLIEI 232
                   ....579************************************************************************************.99*** PP

                   S---BHHHHHHHHHHHHHHHHHHHHHHHCTS................................................---TTSHHHHHHHHHHHH CS
  CTP_transf_1 168 SPkKTveGfigGlvaavvvglllalvlskal................................................alsllhllllslllslva 216
                   SPkKT+eGf+g+++++++++++l+ +l+ +                                                 +++++h+l l++++sl+a
    CCD22872.1 233 SPKKTLEGFLGAWFFTALASIILTRLLTPYDyltcpaaneinsnfftfvtcdlnpvfipqeyrlspmvfdkigissitmKPIYFHALNLATFASLFA 329
                   *****************************99****************************************************************** PP

                   HHHHHHHHHHHHHHT-SSS-S-SSSSS-HHHHHHHHHHHHHHHHHHHHHH CS
  CTP_transf_1 217 vfGDLveSglKRafgiKDsGkliPGhGGilDRlDsllfaapvvylllelf 266
                   +fG++++SglKR+f++KD+G++iPGhGGi+DR+D++++++ +++l++e+f
    CCD22872.1 330 PFGGFFASGLKRTFKVKDFGHSIPGHGGITDRIDCQFIMGSFANLYYETF 379
                   **********************************************9986 PP

>> Pro_3_hydrox_C  L-proline 3-hydroxylase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.6e-05      0.14      36      76 ..     391     434 ..     381     436 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.6e-05
                     GGGT--TTT...HHHHHHHHHHHCCTBSS-TTHHHHHHHHHHHH CS
  Pro_3_hydrox_C  36 lsevvsran...ykdivflLaklhffekvpieasydWLkeicrr 76 
                     ls+++ + n   + +++++L  + f+++v +e++y+ L++i ++
      CCD22872.1 391 LSTILMNLNdkqIIELISVLNSVLFKKEVVGEETYEKLVDIYKS 434
                     566655555000556678889999*****************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3091.96
//
Query:       CCD22873.1  [L=535]
Description: hypothetical protein NDAI_0A07190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-61  206.2   0.2      1e-59  202.1   0.2    2.2  1  Pkinase      Protein kinase domain
    3.1e-32  111.9   0.1      1e-30  106.9   0.1    2.3  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0031   16.9   0.5      0.038   13.3   0.0    2.2  2  Kinase-like  Kinase-like
  ------ inclusion threshold ------
      0.041   14.6   7.7        0.3   11.8   7.7    2.6  1  Pkinase_C    Protein kinase C terminal domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.1   0.2   2.3e-63     1e-59       3     256 ..     142     427 ..     140     432 .. 0.90

  Alignments for each domain:
  == domain 1  score: 202.1 bits;  conditional E-value: 2.3e-63
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.....................HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE-- CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.....................kkvlrEikilkklkhpnivrlyevfeekdelylvleyv 80 
                  ++ lG+G++GkV+ +++k+++k +A+K+++k ++  +++                     +++++E +il +l+hpniv+l+++f+++++lyl+l+y+
  CCD22873.1 142 PVRVLGQGAYGKVLLVKDKSSSKLYAMKQLRKAEILITQDvtktkqeeneedeekklqkrlERTFAERSILSELEHPNIVKLFYSFHDNSKLYLLLQYI 240
                 6789*************************999776444444444556778899999*999999************************************ PP

                 TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS......................BCTT CS
     Pkinase  81 eggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk......................ltsf 157
                 +ggel+ +l++ g+l+e+++  +a++i  +l++lH+kgi++rDlKpeN L++e+g+l +tDFGl+k+  s++                       l+s+
  CCD22873.1 241 PGGELFFHLKEYGTLDETTVAYYAAEISCALKFLHDKGIVYRDLKPENCLLNETGHLVLTDFGLSKKSVSQEVnselnsedtdtpteqigenvdtLHSI 339
                 ******************************************************************9998877899*********************** PP

                 TSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHH CS
     Pkinase 158 vgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltae 256
                 +gt+eY+APE+lk+ +y++++D++slG++ly +l+gkpp+ g ++k     +l++      i ++ k   + +  +s+ +kd+l++llkkd++kR+ ++
  CCD22873.1 340 IGTPEYCAPEILKGLPYDRNCDWYSLGCLLYDMLSGKPPYTGVDHKV----ILNK------I-QKDKTGPKIPFYLSDGMKDMLTWLLKKDRSKRWDVD 427
                 *****************************************666555....3333......2.2335666777889*******************9765 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.1   2.2e-34     1e-30       5     251 ..     144     425 ..     140     431 .. 0.78

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 2.2e-34
                  EEEEEESSEEEEEEEEET......TTTSSEEEEEE.....EEESTTSSHHH.......HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--T CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkg......ekekkevkVav.....Ktlkeeateee.......keelleeakimkklkhpnivkllgvctkeepllivteyvk 84 
                  + lG+Ga+GkV   + k+       k+ ++ ++ +     Kt +ee++e+e        e+ + e +i+++l+hpnivkl     ++++l+++++y++
   CCD22873.1 144 RVLGQGAYGKVLLVKDKSssklyaMKQLRKAEILItqdvtKTKQEENEEDEekklqkrLERTFAERSILSELEHPNIVKLFYSFHDNSKLYLLLQYIP 241
                  789********99988888888884555555554433333666655555551222111334567999******************************* PP

                  TEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE..EETTSSTSGG........... CS
  Pkinase_Tyr  85 gGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey..vkkeeaklpv........... 169
                  gG+L  +L++    +l+ +++  +a+++++++++L++k +v rdl   N+Ll+e+ +  ++DfGL+++  +++     ++e++++p            
   CCD22873.1 242 GGELFFHLKEY--GTLDETTVAYYAAEISCALKFLHDKGIVYRDLKPENCLLNETGHLVLTDFGLSKKSVSQEVNseLNSEDTDTPTeqigenvdtlh 337
                  ****9999997..9****************************************************99854443323344444444311111111111 PP

                  ......GGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS-- CS
  Pkinase_Tyr 170 ......kWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRpt 251
                        +++apE+lk   +  + D +s G ll+ +++ g+ py+g++++ +l+k+ k+++  + p + ++ ++++++  +++d ++R +
   CCD22873.1 338 siigtpEYCAPEILKGLPYDRNCDWYSLGCLLYDMLS-GKPPYTGVDHKVILNKIqKDKTGPKIPFYLSDGMKDMLTWLLKKDRSKRWD 425
                  112222688****************************.*****************666667899********************99976 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.4     0.047   2.1e+02       9      46 ..     135     172 ..     130     199 .. 0.73
   2 !   13.3   0.0   8.4e-06     0.038     159     212 ..     273     328 ..     248     338 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.047
  Kinase-like   9 erertlvrgellkkgdrsvvfevkdqetgeplavkvfl 46 
                  +  r ++ + +l++g  ++v++vkd+   +  a+k+  
   CCD22873.1 135 RTVRDFKPVRVLGQGAYGKVLLVKDKSSSKLYAMKQLR 172
                  56677888888899999999999998877777777654 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 8.4e-06
  Kinase-like 159 nLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEl 212
                   L++kg+v  +++++n ll+e g l+l++f+   +   + v se +   +  P E 
   CCD22873.1 273 FLHDKGIVYRDLKPENCLLNETGHLVLTDFGLSKKSVSQEVNSELNseDTDTPTEQ 328
                  59****************************85555444444455444455666665 PP

>> Pkinase_C  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   7.7   6.7e-05       0.3       5      46 .]     487     524 ..     483     524 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.7e-05
   Pkinase_C   5 eDtsNFDpeFTeedprdtppddmpagspltssvq..enFrGFtY 46 
                 e   NFD+eFT+++     +d       l++  +  ++F+GF+Y
  CCD22873.1 487 ELAENFDSEFTSMSYENFDED------ILNNDTNsiDMFQGFSY 524
                 6678*********95555555......3333333559******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1424  (0.0794244); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 3696.57
//
Query:       CCD22874.1  [L=374]
Description: hypothetical protein NDAI_0A07200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-08   34.6   0.0    2.6e-08   33.9   0.0    1.3  1  ADH_zinc_N  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.4e-12   2.6e-08       1     117 [.     181     307 ..     181     322 .. 0.81

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.4e-12
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT.....TESEEEETTTC.H...HHHHHHHHTT.TSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECS CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakkl.....Gadevinykea.d...lverikeltg.gegvdvvfecvGsgatleaalkllkpgGrlvvvG 89 
                 gv  ++ q+Ak+ G+++  v ++++ ++ +++      Ga+ vi +++  d    +e + ++ g    v ++++ vG g++ ++  + l  +  + ++G
  CCD22874.1 181 GVSKMVTQIAKINGIKTLSVIRDRDDFDEVAETlektfGATKVISESQNnDkvfNKEVLPKILGeNARVRLALNSVG-GKSSSSIARKLENDALMLTYG 278
                 8999***********99999999998866655335555********5544455344455566655779999******.********************* PP

                 C.TSSEEEEEHHHHHHTT-EEEEE-SSCH CS
  ADH_zinc_N  90 g.gkgeeefdlrnlllkeksilGsllgsl 117
                 g +k++ +++++  ++k ++ +G +  + 
  CCD22874.1 279 GmSKQPVTLPTSLHIFKGLTSQGYWSTKH 307
                 977777879999999*********99883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2882.68
//
Query:       CCD22875.1  [L=387]
Description: hypothetical protein NDAI_0A07210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-36  124.5   0.1    4.3e-36  123.0   0.1    1.9  1  YchF-GTPase_C  Protein of unknown function (DUF933)
    1.7e-16   60.3   0.0      1e-15   57.8   0.0    2.1  2  MMR_HSR1       50S ribosome-binding GTPase
    9.5e-05   22.4   0.0    0.00021   21.3   0.0    1.6  1  TGS            TGS domain
  ------ inclusion threshold ------
      0.021   14.4   0.0      0.045   13.3   0.0    1.5  1  FeoB_N         Ferrous iron transport protein B
       0.12   11.7   0.0       0.18   11.1   0.0    1.2  1  alpha-hel2     Alpha-helical domain 2


Domain annotation for each model (and alignments):
>> YchF-GTPase_C  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.1   1.2e-39   4.3e-36       1      81 [.     307     387 .]     307     387 .] 0.99

  Alignments for each domain:
  == domain 1  score: 123.0 bits;  conditional E-value: 1.2e-39
  YchF-GTPase_C   1 LitffTaGekevraWtikkgttapqaAgviHsDfekgFiraevikyedlvelgseaaakeagklrlegkdyvvqdgDiilf 81 
                    Li+ffT+G++evr+Wti++gt+apqaAgviH+D+ ++Fi a+v+kyed +e++ eaa+k+agkl+++gkdyvv+dgDii+f
     CCD22875.1 307 LISFFTCGPDEVREWTIRRGTKAPQAAGVIHNDLMNTFILAQVTKYEDAIEYKDEAAVKAAGKLQQKGKDYVVEDGDIIYF 387
                    89*****************************************************************************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   2.9e-19     1e-15       2      87 ..      23     130 ..      22     160 .. 0.79
   2 ?   -0.2   0.0      0.29     1e+03      70     113 ..     184     232 ..     156     251 .. 0.65

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 2.9e-19
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE...................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke...................ielvDtpGliegaseekglgkaflalee.adli 79 
                 ++ivG  NvGKSt ++a+t++     +++p++T+d++e+rv +   +                   ++++D++Gl +gas ++glg+afl++++ +d i
  CCD22875.1  23 AGIVGLANVGKSTSFQAITRSpLGNPANYPFATIDPEEARVIVPS-PrfdelcaiynktaskvpahLTVYDIAGLSKGASAGEGLGNAFLSHIRaVDSI 120
                 79*******************77899**************98332.13455555555566666666********888*****************55*** PP

                 EEEEETT..T CS
    MMR_HSR1  80 llvvdas..e 87 
                   vv++    
  CCD22875.1 121 YQVVRCFddA 130
                 ****988431 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.29
                 HHHHHCTSEEEEEEETT....TTCSHHHHHHHHHHHHH.TTSEEEEEEE CS
    MMR_HSR1  70 flaleeadlillvvdas....eeklkpldeeleellee.akkplilvln 113
                  ++ e  + i+ ++++     +++++p++ e+ +++   + kp+i+++n
  CCD22875.1 184 KEEAELIKRIIELIQSGqrvaNQTWTPKEVEIINTMMLlTAKPCIYLIN 232
                 2222224566666664455554457776666665543245566666554 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   5.8e-08   0.00021      12      56 ..     320     385 ..     308     387 .] 0.92

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.8e-08
                 E..EETTB-HHHHHHHHSTTHHHHEEEEEECS...................EEEETTSBB-SSEEE CS
         TGS  12 d..lprgatveDfAykIhrslakkfiyAlVnG...................qrvgldhvLedgdvv 56 
                 +  ++rg+ + ++A  Ih +l ++fi A+V +                   q+ g d+v+edgd++
  CCD22875.1 320 EwtIRRGTKAPQAAGVIHNDLMNTFILAQVTKyedaieykdeaavkaagklQQKGKDYVVEDGDII 385
                 3558999999******************************************************98 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.3e-05     0.045       4      42 ..      24      63 ..      21      73 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
                EEEESTTSSHHHHHHHHHTTSE.EEEESTTSSSEEEEEEE CS
      FeoB_N  4 alvGnpnvGkttlfnaltgakq.kvgNwpGvtvekkegkl 42
                 +vG  nvGk+t f a+t +   + +N+p  t++ +e+++
  CCD22875.1 24 GIVGLANVGKSTSFQAITRSPLgNPANYPFATIDPEEARV 63
                689****************9853789*******9998876 PP

>> alpha-hel2  Alpha-helical domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.9e-05      0.18      51     112 ..     149     213 ..     106     223 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.9e-05
  alpha-hel2  51 AIsaeseevefiakaradap.llylk.esleaLeaa.vpgLgktvldvirkasalglelytPevi 112
                 + ++  ++vef++ka + a+ + + + +sle  +++    L k ++++i++++++  +++tP+ +
  CCD22875.1 149 STELGLKDVEFCEKALEAAEkIAKRGgQSLEVKQKKeEAELIKRIIELIQSGQRVANQTWTPKEV 213
                 44555678************87776515666444431457**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       855  (0.0476881); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2792.34
//
Query:       CCD22876.1  [L=310]
Description: hypothetical protein NDAI_0A07220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-46  157.4   0.0    2.8e-46  156.8   0.0    1.3  1  SCO1-SenC      SCO1/SenC
    0.00017   21.5   0.1       0.01   15.8   0.0    2.8  2  AhpC-TSA       AhpC/TSA family
      0.001   19.4   0.6      0.029   14.7   0.0    2.8  3  Thioredoxin_8  Thioredoxin-like


Domain annotation for each model (and alignments):
>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.8   0.0   4.7e-50   2.8e-46       1     134 []     129     267 ..     129     267 .. 0.93

  Alignments for each domain:
  == domain 1  score: 156.8 bits;  conditional E-value: 4.7e-50
   SCO1-SenC   1 ggpFelvdqdgeavteedlegkpslvffgFthCpdvCpttlanmaevldalgee....aekvqplfiTvDPerDtpevlkeyleafdpriigltGskee 95 
                 ggpF+l+d +g+++t++dl gk+++++fgF+hCpd+Cp +l ++  +ld+l+++    + k+qp+fiT+DP+rDtpevlk+yl+ f+p+i+g+tG+ +e
  CCD22876.1 129 GGPFKLTDFNGNPFTDQDLLGKFTIIYFGFSHCPDICPEELDKLGVWLDDLKKRrgseHVKIQPIFITCDPNRDTPEVLKAYLKDFHPDIVGVTGTYDE 227
                 68**************************************************995544489************************************** PP

   SCO1-SenC  96 iakaakefrvyvekvedees.dytvdHsssvyLvdpdgrv 134
                 i++++ ++++++++ +++++ dy+v+Hs ++yL+dp+g++
  CCD22876.1 228 IKDMCAKYKAFFATPRETKNqDYIVEHSIFFYLMDPEGQF 267
                 ***********6655555555*****************97 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.027   1.6e+02      42      76 ..      37      71 ..      30      85 .. 0.85
   2 !   15.8   0.0   1.7e-06      0.01       8     104 ..     132     241 ..     129     287 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.027
                HHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHH CS
    AhpC-TSA 42 ttelpalaklyeefkergvevigvsvdspeshkkf 76
                +t  + ++  + ++ ++ +e i ++ ds ++h+k 
  CCD22876.1 37 YTSSKLFSSSIRNYNKKVLERITINKDSTKQHQKV 71
                6677788999999999**************99985 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.7e-06
                 -EEESTTCEEEECHHHTTSEEEEEEESTST-C.CHHHHHHHHHHCHHHCCCT......TEEEEEEESSSCHHHHHHHHH-H........SSEEEE-TTS CS
    AhpC-TSA   8 felknadgetvslsdykgkpvvlffypkdwcp.vCttelpalaklyeefker......gvevigvsvdspeshkkfiekes.......lnfpllsDeeg 92 
                 f+l++ +g++++ +d+ gk ++++f  + +cp  C++el +l   ++++k+r      +++ i +++d+  +  +  +++        + ++  +De +
  CCD22876.1 132 FKLTDFNGNPFTDQDLLGKFTIIYFGFS-HCPdICPEELDKLGVWLDDLKKRrgsehvKIQPIFITCDPNRDTPEVLKAYLkdfhpdiVGVTGTYDEIK 229
                 99***********************999.89857*********99999998743332235667788777776666666666666688877777777777 PP

                 HHHHHTT-EETT CS
    AhpC-TSA  93 kvakaygvlkee 104
                 +++ +y++++  
  CCD22876.1 230 DMCAKYKAFFAT 241
                 777777777654 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.046   2.7e+02      29      67 ..      46      85 ..      23      98 .. 0.63
   2 !   14.7   0.0   4.8e-06     0.029       1      79 [.     149     236 ..     149     265 .. 0.85
   3 ?   -1.7   0.0      0.62   3.7e+03      48      66 ..     286     309 ..     280     310 .] 0.59

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.046
                   HHHH..TTSEEEEEEE-SS.-HHHHHHHGGGS-TTSEE.EE- CS
  Thioredoxin_8 29 klkk..kkkveivyvsldk.keeefekylkknkkpwlsvpfd 67
                   ++++  kk +e + ++ d+ k+++  + ++k+  +  ++ f+
     CCD22876.1 46 SIRNynKKVLERITINKDStKQHQKVEPISKT--NGFNLKFS 85
                   33334478999999999962455555555555..55555555 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.8e-06
                    .SEEEEEE--SSSHH.HHHHHHHHHHHHHHHHH.....TTSEEEEEEE-S...S-HHHHHHHGGGS-TTSEE.EE-TT-HHHHTT-S- CS
  Thioredoxin_8   1 gkvvlLyfgaswcpp.ckaftpklkelyeklkk.....kkkveivyvsld...kkeeefekylkknkkpwlsvpfddkkrnklkkkyn 79 
                    gk +++yfg s+cp+ c + + kl    ++lkk     + k++ +++ +d    + e  ++ylk+ +++ + v+   ++++ ++ ky+
     CCD22876.1 149 GKFTIIYFGFSHCPDiCPEELDKLGVWLDDLKKrrgseHVKIQPIFITCDpnrDTPEVLKAYLKDFHPDIVGVTGTYDEIKDMCAKYK 236
                    6899***********9**********99999955666799**********44234588899999998887777666666777777765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.62
                    HHHHHHGGGS.....-TTSEE.EE CS
  Thioredoxin_8  48 eefekylkkn.....kkpwlsvpf 66 
                    +  ++y+ k      +++w+s+ f
     CCD22876.1 286 QHIKAYIPKEereklNNKWYSFLF 309
                    555555555555555678988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2384.50
//
Query:       CCD22877.1  [L=989]
Description: hypothetical protein NDAI_0A07230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-70  234.8   0.6    8.2e-70  234.0   0.6    1.5  1  Chitin_synth_1   Chitin synthase
    7.7e-24   84.2   3.8    7.8e-19   67.7   0.0    3.1  3  Chitin_synth_2   Chitin synthase
    2.8e-20   72.1   1.4    8.5e-20   70.5   0.0    2.5  3  Chitin_synth_1N  Chitin synthase N-terminal
    1.7e-08   34.6   0.4    1.7e-08   34.6   0.4    2.2  3  Glyco_trans_2_3  Glycosyl transferase family group 2
      7e-06   26.1   0.0    2.3e-05   24.4   0.0    1.8  2  Glyco_tranf_2_3  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Chitin_synth_1  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.0   0.6   2.3e-73   8.2e-70       1     163 []     326     486 ..     326     486 .. 0.98

  Alignments for each domain:
  == domain 1  score: 234.0 bits;  conditional E-value: 2.3e-73
  Chitin_synth_1   1 mynEdkellarTLkgvmkNieelkkrkkskvwgkdsWkkivVcivsDGrekideetldvlaalgvyqegvakkkvngkevkahlfeyttqlsvde 95 
                     mynEdk+ larTL+++mkN+++l++r ks+vw+kd+Wkk+ V++vsDGr k+++ +ld+laalgvyqe++ak +vng++vkah+fe ttq+s+d 
      CCD22877.1 326 MYNEDKVSLARTLHSIMKNVAHLCNRPKSHVWNKDGWKKVSVILVSDGRAKVNQGALDYLAALGVYQEDMAKASVNGDPVKAHIFELTTQVSIDA 420
                     9********************************************************************************************88 PP

  Chitin_synth_1  96 elklkenekslvpvqllfclkeknakkinShrWlfnafarllqPevcvlldvGtkpgkkslyklwkaf 163
                       +l+  +k++vpvql+fclke+n+kkinShrWlfnaf+++lqP+v++l+dvGt+++++++y+lwk f
      CCD22877.1 421 --DLNYVSKNIVPVQLVFCLKEENKKKINSHRWLFNAFCPVLQPTVVALVDVGTRLNHTAIYHLWKVF 486
                     ..67777778********************************************************87 PP

>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.012        44      23      50 ..     316     343 ..     297     353 .. 0.83
   2 !   67.7   0.0   2.2e-22   7.8e-19     204     377 ..     464     640 ..     459     701 .. 0.79
   3 !   10.8   2.9   3.7e-05      0.13     403     494 ..     738     836 ..     706     864 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.012
  Chitin_synth_2  23 qlkfticlvtaysegeeglrttldslas 50 
                     ++  +++ +t y e++ +l +tl s+ +
      CCD22877.1 316 RECQIVICITMYNEDKVSLARTLHSIMK 343
                     556678889****************965 PP

  == domain 2  score: 67.7 bits;  conditional E-value: 2.2e-22
  Chitin_synth_2 204 ivlmvdadtkvapdsltrlvaalvkdpeilglcGet.kiankkesw....vtaiqvfeyyishhlskafesvfGsvtclPGcfslyrikaakgad 293
                     +v +vd  t++   ++ +l   + +d+++ g  G+  ++  k  s     + a q fey is  l k +esvfG ++ lPG +s+yr +a k+ +
      CCD22877.1 464 VVALVDVGTRLNHTAIYHLWKVFDRDSNVGGAAGQIiTMKGKYGSKllnpLVASQNFEYKISNILDKPLESVFGYISVLPGALSAYRYRALKNHE 558
                     56789****************************985245556555422225789***************************************99 PP

  Chitin_synth_2 294 gkwvPilvspeiveeysenvvdtlhkknllllGedrylt.tlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstvhn 377
                     +   P+  ++  + e  +   + +   n ++l edr l   l+ k  +k   ++v++a+ +t +P++   ++sqrrrw+n ++  
      CCD22877.1 559 DGTGPL--NSYFLGETQDGSEHDVFTAN-MYLAEDRILCwELVAKRNSKWVLKYVKEATGETDVPEEVPEFISQRRRWLNGAMFA 640
                     989996..56666666666666666777.5799****9846999999*********************************98764 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 3.7e-05
  Chitin_synth_2 403 ligtvvlPvaiaftly....livasilksklvpvipl...vllaivlGlpailivltarkleyvawllvyllalPifnfvlPlyafwhlddfswG 490
                     +++ v+l v++a+ +       ++++  ++  + + l   v l   +Gl     ++    +++ +    y+++lP f+ +l ++af +  d swG
      CCD22877.1 738 ITSMVILTVCAAYSVIcgfvFAIKVLRDNENSNNVFLnvvVSLLSTYGLYMFSSIMYLDPWHMFTSSFQYFFTLPAFTCTLQVFAFCNTHDVSWG 832
                     445556666655554311102222332333333332210133445689998888888899*********************************** PP

  Chitin_synth_2 491 etrv 494
                         
      CCD22877.1 833 TKGS 836
                     6543 PP

>> Chitin_synth_1N  Chitin synthase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   2.4e-23   8.5e-20      11      73 .]     265     325 ..     258     325 .. 0.94
   2 ?   -3.6   0.0       3.2   1.1e+04      10      29 ..     423     442 ..     415     449 .. 0.76
   3 ?   -1.5   0.0      0.68   2.5e+03       8      51 ..     853     893 ..     841     903 .. 0.70

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 2.4e-23
  Chitin_synth_1N  11 lvldlpvpkkllkalpeeekeseEfthmRYtAvTcdPddftkegytLRqalygReteLlIviT 73 
                      l ld+p+p+ ll++lp++  +s Ef +mRYtA+T +Pd+f + gy+LR a+++Re++++I+iT
       CCD22877.1 265 LKLDNPIPRGLLDTLPRR--DSPEFVEMRYTACTVEPDEFLEAGYSLRFAEMNRECQIVICIT 325
                      668*************76..8*****************************************9 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.2
  Chitin_synth_1N  10 nlvldlpvpkkllkalpeee 29 
                      n+v  + vp +l+  l+ee+
       CCD22877.1 423 NYVSKNIVPVQLVFCLKEEN 442
                      89999999999998887543 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.68
  Chitin_synth_1N   8 ngnlvldlpvpkkllkalpeeekeseEfthmRYtAvTcdPddft 51 
                      +g+ +++   p+++ k++ e    ++  +++ ++  T+dP +  
       CCD22877.1 853 DGKQIVETSWPQEVDKKFME---IKSRLKEVEFEETTTDPAQER 893
                      56677777778888777773...355666677777888887655 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       3.1   1.1e+04      16      38 ..     302     328 ..     297     341 .. 0.51
   2 !   34.6   0.4   4.8e-12   1.7e-08       2     194 ..     465     694 ..     464     697 .. 0.76
   3 ?   -4.7   1.4         5   1.8e+04     163     187 ..     788     810 ..     770     822 .. 0.41

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 3.1
  Glyco_trans_2_3  16 lrei.....aaelaspevaivqgpvlvm 38 
                      ++e+      ae+  +e++iv ++++++
       CCD22877.1 302 FLEAgyslrFAEMN-RECQIVICITMYN 328
                      44443332223333.3666666665555 PP

  == domain 2  score: 34.6 bits;  conditional E-value: 4.8e-12
  Glyco_trans_2_3   2 illlDaDtvlppdclreiaaela.spevaivqgpvlvm......nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalq... 85 
                      ++l+D  t+l+   ++ +   ++ + +v+ + g+++ m         n l+  + ++++++ + d +  + +g    ++G+ ++ r +al+   
       CCD22877.1 465 VALVDVGTRLNHTAIYHLWKVFDrDSNVGGAAGQIITMkgkygsKLLNPLVASQNFEYKISNILDKPLESVFGYISVLPGALSAYRYRALKnhe 558
                      7888999999999999999999955899999999999866543333466667777779*********************************887 PP

  Glyco_trans_2_3  86 ....................evggwdgdessvsEDfdmglrlqrkG...yrvrfvpeslvkekspltlraalrQrkRwayGc....eleklil. 151
                                          +v +    +  ++ED  ++  l +k    +++ +v e+   + +p ++  ++ Qr+Rw+ G+    +  ++ l 
       CCD22877.1 559 dgtgplnsyflgetqdgsehDV-FTA--NMYLAEDRILCWELVAKRnskWVLKYVKEATGETDVPEEVPEFISQRRRWLNGAmfaaL--YAQLh 647
                      7777766666665544443333.333..579***********88887889999***9999*********************855431..23331 PP

  Glyco_trans_2_3 152 ....lvrllgylgsllwsalplhlallllfsllalalvlllllllaa 194
                          +  ++  +++++++  ++  ++ +lfs++++a ++l +++la+
       CCD22877.1 648 ffqiWKTRHSVTRKFFLHIEFIYQFIQMLFSWFSIANFVLTFYYLAG 694
                      11113334455666666666666688899999999988888877766 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 5
  Glyco_trans_2_3 163 lwsalplhlallllfslla....lalvll 187
                      ++s+      +++l ++ +    + +++ 
       CCD22877.1 788 MFSS------IMYLDPWHMftssFQYFFT 810
                      2222......2222222223333333333 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.2   4.5e+03       4      27 ..     320     344 ..     319     353 .. 0.83
   2 !   24.4   0.0   6.3e-09   2.3e-05      67     229 ..     441     635 ..     424     636 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.2
  Glyco_tranf_2_3   4 lavlVptfneed.vlgevlesllaq 27 
                      + + ++ +ne++  l ++l+s+ ++
       CCD22877.1 320 IVICITMYNEDKvSLARTLHSIMKN 344
                      56889******977899**999864 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 6.3e-09
  Glyco_tranf_2_3  67 arnlgstgksralnealravksdlvllvDdDtvvePdtlkrllqff.ltpkvgavgtpvfllnrs......tlvsalgalefaerhlrflaarr 153
                      +++  +++ ++  n  ++  ++++v+lvD  t++  +++  l  +f ++++vg + ++  ++ ++      + + a++++e+++ ++    +  
       CCD22877.1 441 ENKKKINSHRWLFNAFCPVLQPTVVALVDVGTRLNHTAIYHLWKVFdRDSNVGGAAGQIITMKGKygskllNPLVASQNFEYKISNILDKPLES 534
                      455577888888888889999***********************************999887655344343446667**********8888888 PP

  Glyco_tranf_2_3 154 alg.vltlnGsgslirrevlkele.....................gldplflltdDyelglrlrr...agfrtayvpgaavrevfpsslkayik 222
                       +g +  l G++s++r + lk+ e                      ++++ +l++D +l+ +l +    ++  +yv++a+ ++  p+++ ++i 
       CCD22877.1 535 VFGyISVLPGALSAYRYRALKNHEdgtgplnsyflgetqdgsehdVFTANMYLAEDRILCWELVAkrnSKWVLKYVKEATGETDVPEEVPEFIS 628
                      888546666*********************************88778889*********999877667899999*****99999********** PP

  Glyco_tranf_2_3 223 qrnRwvy 229
                      qr+Rw+ 
       CCD22877.1 629 QRRRWLN 635
                      *****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1067  (0.0595125); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 6710.93
//
Query:       CCD22878.1  [L=1178]
Description: hypothetical protein NDAI_0A07240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-287  954.8   0.1   1.2e-287  954.8   0.1    1.3  2  Chitin_synth_2   Chitin synthase
    2.6e-12   47.0   1.9    1.1e-11   45.0   1.9    2.1  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    3.8e-11   43.3   0.0    5.7e-09   36.2   0.0    2.3  2  Glyco_tranf_2_3  Glycosyltransferase like family 2
      0.003   17.4   0.0      0.068   13.0   0.0    2.6  2  Glycos_transf_2  Glycosyl transferase family 2
     0.0034   16.9   0.0      0.015   14.8   0.0    1.9  2  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.7   1.4       3.7   1.3e+04     408     479 ..     458     479 ..     455     483 .. 0.52
   2 !  954.8   0.1  3.3e-291  1.2e-287       2     527 .]     636    1159 ..     635    1159 .. 0.99

  Alignments for each domain:
  == domain 1  score: -5.7 bits;  conditional E-value: 3.7
  Chitin_synth_2 408 vlPvaiaftlylivasilksklvpviplvllaivlGlpailivltarkleyvawllvyllalPifnfvlPly 479
                     vl v++                                                  v++l++ i +f++  y
      CCD22878.1 458 VLYVSL--------------------------------------------------VFILSVVIIKFLFACY 479
                     444445..................................................5555555555555555 PP

  == domain 2  score: 954.8 bits;  conditional E-value: 3.3e-291
  Chitin_synth_2    2 stiiaksvaalqlidkrslefqlkfticlvtaysegeeglrttldslastdyddkrklllvvcdGlikGsGndkstPeivldllkdavspked 94  
                      ++ii+ +++++++id+++++f+l++tic+vt+yse+eeglrttldsl++tdy++++kll+vvcdGlikGsGnd stPei+l++++d+v++ ed
      CCD22878.1  636 TSIIHPDIVQQPPIDYKPFGFPLIHTICFVTCYSEDEEGLRTTLDSLSTTDYPNSHKLLMVVCDGLIKGSGNDLSTPEITLGMMEDFVTEPED 728 
                      67999**************************************************************************************** PP

  Chitin_synth_2   95 veplsyvavaeGskrhnkakvyaGfyeyeddstvpeekqqrvPlivvvkvGtpseasekkPGnrGkrdsqiilmsflekvtfdermteleyel 187 
                      v+p+syvava+G+krhn+ak+yaGfy+++d +tvp ekqqrvP+i++vk+Gtp+e+ + kPGnrGkrdsq+ilmsfl+kvtfdermtele++l
      CCD22878.1  729 VKPYSYVAVASGTKRHNMAKIYAGFYKFND-NTVPIEKQQRVPMITIVKCGTPAEQGSPKPGNRGKRDSQVILMSFLQKVTFDERMTELEFQL 820 
                      *****************************6.9************************************************************* PP

  Chitin_synth_2  188 fkkikkviGvspdfyeivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankkeswvtaiqvfeyyishhlskafesvfGsvtclPGc 280 
                      +++i+ ++G+++dfye+vlmvdadtkv+pdslt++va++vkdp+++glcGetkiank+eswvtaiqvfeyyishh+skafes+fGsvtclPGc
      CCD22878.1  821 LRNIWSLTGLMSDFYETVLMVDADTKVFPDSLTHMVAEMVKDPTVMGLCGETKIANKAESWVTAIQVFEYYISHHQSKAFESIFGSVTCLPGC 913 
                      ********************************************************************************************* PP

  Chitin_synth_2  281 fslyrikaakgadgkwvPilvspeiveeysenvvdtlhkknllllGedrylttlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwins 373 
                      fslyrik++kg dg+wvP+l++p+ive+ys+nv+dtlhkknllllGedryl++l+lktfpkrk++fvp+a+ckt++Pd+fkvllsqrrrwins
      CCD22878.1  914 FSLYRIKSPKGLDGYWVPVLANPDIVERYSDNVTDTLHKKNLLLLGEDRYLSSLMLKTFPKRKQIFVPKAACKTIVPDSFKVLLSQRRRWINS 1006
                      ********************************************************************************************* PP

  Chitin_synth_2  374 tvhnllelvlvrdlcGtfcfsmrfvvfieligtvvlPvaiaftlylivasilksklvpviplvllaivlGlpailivltarkleyvawllvyl 466 
                      tvhnl+elvl++dlcGtfcfsm+fv+ ieligt+vlP+ai+ft+y+i+++i++ k++p+i+lvlla++lGlp++++v+ta++++y++w+ +y+
      CCD22878.1 1007 TVHNLFELVLLNDLCGTFCFSMQFVIGIELIGTLVLPLAICFTIYVIIFAIVS-KPTPIITLVLLAVILGLPGLIVVITATRWSYLMWMAIYI 1098
                      ***************************************************99.*************************************** PP

  Chitin_synth_2  467 lalPifnfvlPlyafwhlddfswGetrvveGekkkkaageaegefdsskivlkrfeefere 527 
                      +alPi+nfvlP+ya+w++ddfswG+tr+++G++k   +++ egefd+s+i++++++efere
      CCD22878.1 1099 VALPIWNFVLPSYAYWKFDDFSWGDTRTIAGGNKAGGHDDVEGEFDHSMIKMRTWREFERE 1159
                      ***********************************************************97 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   1.9   3.1e-15   1.1e-11       2     190 ..     838    1073 ..     837    1114 .. 0.69

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 3.1e-15
  Glyco_trans_2_3    2 illlDaDtvlppdclreiaaela.spevaivqgpvlvm.nvanwleelaalffaedhgkdilvrealgrvvpsvGsgaflrrsalq...... 85  
                       +l++DaDt + pd+l   +ae+  +p v  ++g + ++    +w++ ++++++ ++h  +  + + +g+v+ ++G  ++ r++  +      
       CCD22878.1  838 VLMVDADTKVFPDSLTHMVAEMVkDPTVMGLCGETKIAnKAESWVTAIQVFEYYISHHQSKAFESIFGSVTCLPGCFSLYRIKSPKgldgyw 929 
                       899*****************99878*********998736799***************************************9988666777 PP

  Glyco_trans_2_3   86 ..............evggwdgdes...........svsEDfdmglrlqrkG..yrvrfvpeslvkekspltlraalrQrkRwayGc...... 144 
                                     +                     ++ED +++  +++     + +fvp +++k+ +p++++  l Qr+Rw+         
       CCD22878.1  930 vpvlanpdiverysD--------NvtdtlhkknllLLGEDRYLSSLMLKTFpkRKQIFVPKAACKTIVPDSFKVLLSQRRRWINSTvhnlfe 1013
                       776666654433331........012345555566*****9887555444466999*****************************7664333 PP

  Glyco_trans_2_3  145 .eleklil................lvrllgylgsllwsalplhlallllfslla.....lalvlllll 190 
                              l                 +    ++g+l++    +  +++++f +++     + lvll+++
       CCD22878.1 1014 lV-----LlndlcgtfcfsmqfviGI---ELIGTLVLPLAICFTIYVIIFAIVSkptpiITLVLLAVI 1073
                       20.....1333333333343332222...344444444444444444444444444444222222222 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0     0.006        21       3      38 ..     660     696 ..     657     746 .. 0.83
   2 !   36.2   0.0   1.6e-12   5.7e-09      89     228 ..     836    1004 ..     811    1006 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.006
  Glyco_tranf_2_3   3 dlavlVptfneed.vlgevlesllaqeyprvevvvvv 38 
                      +++++V+++ e++  l+ +l+sl++ +yp+++  ++v
       CCD22878.1 660 HTICFVTCYSEDEeGLRTTLDSLSTTDYPNSHKLLMV 696
                      679********9977888******999*886655544 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 1.6e-12
  Glyco_tranf_2_3   89 dlvllvDdDtvvePdtlkrllqff.ltpkvgavgtpvflln.rstlvsalgalefaerhlrflaarralg.vltlnGsgslirrevlkele. 176 
                       + vl+vD+Dt v Pd+l  +++ + ++p v+ + +     n  +++v+a + +e+++ h++  a+   +g v++l G +sl+r +  k l+ 
       CCD22878.1  836 ETVLMVDADTKVFPDSLTHMVAEMvKDPTVMGLCGETKIANkAESWVTAIQVFEYYISHHQSKAFESIFGsVTCLPGCFSLYRIKSPKGLDg 927 
                       689*************9888888856666666555554444388*************************978******************** PP

  Glyco_tranf_2_3  177 ......................gldp.lflltdDy.elglrlrr.agfrtayvpgaavrevfpsslkayikqrnRwv 228 
                                             ++ + l ll++D   ++l+l+   + +  +vp+aa+ +  p+s+k +  qr+Rw+
       CCD22878.1  928 ywvpvlanpdiverysdnvtdtLHKKnLLLLGEDRyLSSLMLKTfPKRKQIFVPKAACKTIVPDSFKVLLSQRRRWI 1004
                       ********************96555589999999625567777766666669************************7 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.092   3.3e+02       3      28 ..     664     689 ..     663     700 .. 0.84
   2 !   13.0   0.0   1.9e-05     0.068      82     164 ..     837     920 ..     828     923 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.092
                      EEEESS-.TTTHHHHHHHHHHHGGCCE CS
  Glycos_transf_2   3 viptyNe.ektlletlesllaqdpypd 28 
                      ++++y e e+ l+ tl+sl    +yp+
       CCD22878.1 664 FVTCYSEdEEGLRTTLDSLSTT-DYPN 689
                      799****************988.5555 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.9e-05
                      EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS...EEEECCHCCCCHCCCCCCSTTCSTCCCEEEEH CS
  Glycos_transf_2  82 yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv...generlyfkerkrslkgnlsfeigsaallrre 164
                       +l +DaD+ + pd l  +v+++ kd++  v+g    ++  ++  ++ + +   ++     + +   s++g++++  g+++l+r +
       CCD22878.1 837 TVLMVDADTKVFPDSLTHMVAEMVKDPT--VMGLCGETKIANKAESWVTAIqvfEYYISHHQSKAFESIFGSVTCLPGCFSLYRIK 920
                      6899*********************888..55554444444444444444445444444444555567788999999999999876 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.3e-06     0.015      21      93 ..     825     899 ..     818     920 .. 0.68
   2 ?   -1.1   0.0      0.32   1.1e+03     128     172 ..     960    1004 ..     958    1005 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.3e-06
  Glyco_transf_21  21 nllqaleaakydllvisDsdvrvkpdyLeellaaled.pkvglVtslpvgsdakglaaaleaafl.ntlagvlqa 93 
                      + l++l +  y+ +++ D+d+ v pd L++++a++ + p+v  +++    ++++  + +  ++f  ++ +   +a
       CCD22878.1 825 WSLTGLMSDFYETVLMVDADTKVFPDSLTHMVAEMVKdPTVMGLCGETKIANKAESWVTAIQVFEyYISHHQSKA 899
                      56778888889*********************9986558888888755555555555555555543444444443 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.32
  Glyco_transf_21  128 eDyalgkllraa..GlkvvlspapiaqtsvprrsslrallaRqlrWa 172 
                       eD  l+ l+ +     k +++p+++++t vp+  s++ ll++  rW 
       CCD22878.1  960 EDRYLSSLMLKTfpKRKQIFVPKAACKTIVPD--SFKVLLSQRRRWI 1004
                       6666666666655567889999999*****97..9***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 8167.62
//
Query:       CCD22879.1  [L=170]
Description: hypothetical protein NDAI_0A07250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-26   91.0   0.0    6.6e-26   90.7   0.0    1.1  1  Macro     Macro domain
  ------ inclusion threshold ------
      0.044   14.0   0.0      0.071   13.3   0.0    1.3  1  DUF1768   Domain of unknown function (DUF1768)


Domain annotation for each model (and alignments):
>> Macro  Macro domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   7.4e-30   6.6e-26       1     118 []      22     156 ..      22     156 .. 0.90

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 7.4e-30
                 EEEEETTSS-CSHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTSEEEEE-TTSSSSEEEEEESE-TTTS...TSTTHHHHHHHHHHHHHHH....HHHT CS
       Macro   1 VnAaNsrllggggvagaihraagkalkeeckelekkqggcllGeavvtpaynlpakyvihtvgplftss...kskeeeellakayknalel....aeek 92 
                 ++++N+++++ggg a+a++r++++a   ++k+++k+++ +llG+++++p+++ +   v+++  +lfts    +++++  ++ ++++ al++     e +
  CCD22879.1  22 IHSCNCNGSWGGGFAYALARKYPQAEDTYMKHCDKYGA-NLLGTCLLLPSFEGD--NVLIA--CLFTSAfggSRHDDSRSILEYTEMALNDlmdtIETR 115
                 7********************************88665.8**************..9****..****999999*****************976653444 PP

                 T-S...............EEEEE-TTSSTTSBTHHHHHHHH CS
       Macro  93 gik...............svafPaistGifgvpweeaarva 118
                 +i                 +++P+i++Gifgvpw ++++++
  CCD22879.1 116 RIDemhpfsfegenlknfELEMPKINSGIFGVPWAKTEEIL 156
                 444777888888888899********************985 PP

>> DUF1768  Domain of unknown function (DUF1768)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.9e-06     0.071     111     153 ..      15      66 ..       4      68 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.9e-06
     DUF1768 111 atgdrelveasprDriWGiGlk.........adea...aeerekwkGkNlLGkal 153
                 +t +r++++  + +  WG G++         a  +   +++ +k  G NlLG +l
  CCD22879.1  15 RTYKRIIIHSCNCNGSWGGGFAyalarkypqA--EdtyMKHCDKY-GANLLGTCL 66 
                 4899******************7776665541..13335555555.*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1277.72
//
Query:       CCD22880.1  [L=667]
Description: hypothetical protein NDAI_0A07260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     1e-175  584.8  35.5   1.2e-175  584.6  35.5    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  584.6  35.5  6.7e-180  1.2e-175       1     440 []     137     596 ..     137     596 .. 0.99

  Alignments for each domain:
  == domain 1  score: 584.6 bits;  conditional E-value: 6.7e-180
  Transp_cyt_pur   1 pvpeeeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvv 95 
                     pv++++R+w+++n++++Wl++++nintw+i+a+gl+lgLnwwq++++i++g+ ++++fv+l++++G++y+l+fpi+sRasfG+++sl+p+++rvv
      CCD22880.1 137 PVEKKRRVWSWYNFCYFWLAECFNINTWQIAATGLQLGLNWWQCWITIWIGYGFVGVFVVLASRIGSAYHLSFPISSRASFGVFFSLWPIINRVV 231
                     8********************************************************************************************** PP

  Transp_cyt_pur  96 iaivwfgvqawiGsealllmlgkifgk..wleigg..ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkae 186
                     +aivw++vq wi++++++lml++ifgk  +++i++  ++++++++e+++ffifwvv ++++l  ++k+r++f+++a+lvp+a+fgfliw ++ka+
      CCD22880.1 232 MAIVWYSVQSWIAVAPVALMLRSIFGKnlPDRIPNhfGSPNSTTFEFMCFFIFWVVEFPFLLIEPHKVRHLFTVKAALVPFASFGFLIWSVRKAG 326
                     *********************************************************************************************** PP

  Transp_cyt_pur 187 g....Gpvldkavklgkse.lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldila 276
                     g    G++++++ k ++   ++l++++g++a+f+t+++napDF+r+aktk s++++ql ++p+lf++++l+gilv+aa++ +yg+n+wspld+l+
      CCD22880.1 327 GtialGALNSEQPKGSEFSwAMLRSIMGCMANFSTMVINAPDFSRFAKTKHSALWSQLFCIPFLFSITCLVGILVTAAGYELYGVNYWSPLDVLE 421
                     *99999999988777744479************************************************************************** PP

  Transp_cyt_pur 277 kfdet.......agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavflspvag 364
                     +f+         agv+li++++alaqlg+nisan+ls+g+d++allPk+ini+rgs+++a +al+i+pw+l+++ssk ft++ls++a+fls++ag
      CCD22880.1 422 QFLVRsytkgtrAGVFLISFVFALAQLGTNISANSLSCGTDMSALLPKFINIRRGSVFCAFMALCICPWNLMATSSK-FTMALSAYAIFLSSIAG 515
                     ***99999*********************************************************************.***************** PP

  Transp_cyt_pur 365 viiadyfvvrrgylklaalytrrrgsaYwy..rkgvNwravaayivGiaaglvgvagsvg...ikvvkgaeklfdlsylvG 440
                     v++adyfvvrrgy+kl+++y++++gs+Y+y  ++g+Nwra++ y++G+a++l+g++g+vg   i+v++ga+kl++l+y++G
      CCD22880.1 516 VVCADYFVVRRGYIKLTHVYSHQKGSFYMYgnKYGINWRALVGYLCGVAPNLPGFIGEVGapkITVSDGAMKLYYLNYWIG 596
                     ********************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4613.81
//
Query:       CCD22881.1  [L=348]
Description: hypothetical protein NDAI_0A07270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-21   75.4   0.0    3.5e-21   74.5   0.0    1.4  1  GalKase_gal_bdg  Galactokinase galactose-binding signature
      8e-17   61.2   1.0    1.3e-16   60.6   0.3    1.7  2  GHMP_kinases_N   GHMP kinases N terminal domain
  ------ inclusion threshold ------
      0.014   15.2   0.0      0.034   14.1   0.0    1.5  1  DUF1748          Fungal protein of unknown function (DUF1748)


Domain annotation for each model (and alignments):
>> GalKase_gal_bdg  Galactokinase galactose-binding signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   5.9e-25   3.5e-21       1      48 [.      26      74 ..      26      74 .. 0.96

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 5.9e-25
                     HHHHHHHS--.-EEEEEEEEEEEE--S-TTTT-EEEEEEEEEEEEEEEE CS
  GalKase_gal_bdg  1 eeFqktFgke.pfvasAPGRvnLiGEHtDYngGfVlpmAieqdiyiavs 48
                     eeF k++g++ +f+a++PGRvnLiGEH+DY++++Vlp Ai+ d+++av+
       CCD22881.1 26 EEFVKAYGSKpDFIARSPGRVNLIGEHIDYADFSVLPLAIDVDMLLAVK 74
                     58********66***********************************95 PP

>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.3   2.1e-20   1.3e-16       2      66 .]     147     216 ..     146     216 .. 0.88
   2 ?   -2.6   0.0       1.2   6.9e+03      21      36 ..     272     287 ..     272     308 .. 0.73

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 2.1e-20
                     EEEEESSHTTSSSCHHHHHHHHHHHHHHHHT.TEH..HHH...HHHHHHHHHHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   2 ivikseiPvgaGLGSSAAlavalvaAllall.gls..lee...aklaleaerlaqggngsggDvaasvyGg 66 
                     i +++++P+g+GL+SSAA+++a+++A+ +++ g +  l++    k++++ae++++ +n++g+D+aasv+G+
      CCD22881.1 147 IFCQGNVPTGSGLSSSAAFICATALAIIRANmGEEykLSKhdlTKITVVAEHYVG-VNNGGMDQAASVCGE 216
                     7899***********************9999544444544678***********8.999**********95 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
                     HHHHHHHHHHHTTEHH CS
  GHMP_kinases_N  21 avalvaAllallglsl 36 
                     ++a++  l++ +g++l
      CCD22881.1 272 VTAAANVLAKKYGVVL 287
                     5678888888888766 PP

>> DUF1748  Fungal protein of unknown function (DUF1748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.6e-06     0.034      11      63 ..     164     216 ..     161     219 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.6e-06
     DUF1748  11 avLvSvvlAgvkrttgltlnsdkitd.kdikkwvdkYLgvGEwvmDqsvavmgs 63 
                 a ++++ lA ++ + g + + +k +d ++i  ++++Y gv +  mDq+++v+g+
  CCD22881.1 164 AFICATALAIIRANMGEEYKLSK-HDlTKITVVAEHYVGVNNGGMDQAASVCGE 216
                 679********************.888************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2684.13
//
Query:       CCD22882.1  [L=693]
Description: hypothetical protein NDAI_0A07280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-78  262.3   0.4    7.4e-78  261.9   0.4    1.2  1  Aldose_epim      Aldose 1-epimerase
    1.3e-57  195.7   0.0    1.9e-57  195.2   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    2.1e-52  178.0   0.0    3.5e-52  177.3   0.0    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
      3e-16   59.4   0.0    1.1e-14   54.3   0.0    2.3  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    2.5e-14   53.0   0.0    5.2e-14   51.9   0.0    1.5  2  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    7.6e-10   38.4   0.0    1.1e-09   37.8   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain
    1.4e-07   31.6   0.0    2.5e-07   30.8   0.0    1.4  1  KR               KR domain
    2.8e-06   26.9   0.0    4.6e-06   26.2   0.0    1.3  1  adh_short        short chain dehydrogenase
    5.6e-06   25.7   0.0    4.4e-05   22.8   0.0    2.1  1  NAD_binding_4    Male sterility protein
    0.00035   20.5   0.0    0.00057   19.8   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.9   0.4   4.1e-81   7.4e-78       3     301 .]     369     690 ..     367     690 .. 0.96

  Alignments for each domain:
  == domain 1  score: 261.9 bits;  conditional E-value: 4.1e-81
                  EEEEETTEEEEEECTCTTEEEEEEETT.STEESB-B-STHHHHHHSC..CSSCEECSS-SEEETTEEEETTEEEECCCCBTTTCEETBSGGG...SB- CS
  Aldose_epim   3 itlkngaglsakislyGAtllslkvpdkeqrevllgsddaeeylkds..yfgatlgrvanRianGeFeldGkpyqlpqneegknplHGgarg...reW 95 
                  +t+  g +++a+i+++GAtl++lkv++   ++v+lg++++++yl+ +  y+gat+gr+anRia G+F l+Gk+yql++n+ g n++HG + +   +++
   CCD22882.1 369 VTIGSGSRFQATIANLGATLVDLKVDG---QSVVLGYEKESQYLTPDtcYIGATIGRYANRIAHGKFALNGKDYQLTINN-GVNANHGSIGSfhaKRF 462
                  89999**********************...8*************************************************.*********99****** PP

                  EEEEEEE..TTEEEEEEEEEEETC.HCSTSEEEEEEEEEEETTEE.EEEEEEEEESSS-EEEEEEEEEEEETSSC....TCTGGEEEEEEEEEEEECT CS
  Aldose_epim  96 eveevke..ddgvtvslvlkpdge.egypgdlevrvtytLnedne.lkieyeatndgkptpfnltnHtYFnlsge....sidshelqieadeylevde 185
                    +  k+  +d+ t ++ l +++e  ++pg+l+v v ytLn  ++ l+iey+a+ + ++tp+n+tnHtYFnl++     si ++e+++ +++ ++vde
   CCD22882.1 463 LGPILKNptKDTFTAEYALIDNSEdSEFPGSLQVIVNYTLNVATKtLDIEYTAQVEVEATPINMTNHTYFNLNKLygsdSIAGTEIKVISNKSIDVDE 560
                  *******99777777777755555355****************999********999****************88*********************** PP

                  TSGEEEEEEECTTCCCCCCSSEEHCSSETEEEEEEEESSC............SEEEEEETTTTEEEEEEEETTSSEEEEEECTTTT.SEECCEEESSE CS
  Aldose_epim 186 eliptgelkdvkgtpfdfrqpkaigedlkglDhayllksk............lkaviidpdkksgiklevsttepalvvytgnflk.kylsreglale 270
                  + iptg+++d++ ++fd ++p+++g++++ +D ++  + +            lk+v ++++++s+iklevs+tep+++vytg++l+ ++  r+g+a+e
   CCD22882.1 561 NVIPTGKIVDREIATFDDSKPTVLGKEGPDYDYNFFVDATatpnqidtrgneLKLVTTAYHPESNIKLEVSSTEPSYQVYTGDWLCaGFHPRQGFAVE 658
                  **************************************99********************************************************** PP

                  CTCETCCCECHHHT.-EEEHTTTEEEEEEEEE CS
  Aldose_epim 271 tqmlpdepnhpefp.sivlkpGesysaetsys 301
                  + ++++++n+ + + s++lkpGe++ a+++y+
   CCD22882.1 659 PGRYVNAINQDKYKgSVILKPGETFGAKIQYK 690
                  ***********9999**************996 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.2   0.0     1e-60   1.9e-57       1     330 [.       8     335 ..       8     337 .. 0.83

  Alignments for each domain:
  == domain 1  score: 195.2 bits;  conditional E-value: 1e-60
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHTTSHH CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevynLAAqshVdvsfekPe 96 
                    L+TG+aG+iGs+++  L+e+gye+++++++++s + +++++l+       ++++ ++k+Dl+D++ le++++e+++d v+++A+ ++V++s + P 
     CCD22882.1   8 LVTGGAGYIGSHTVVELIENGYECVIVDNLCNSSY-DSVARLEILT----KHHIPFYKVDLCDHDGLEKVFQEHNIDSVIHFAGLKAVGESTQIPL 98 
                    9****************************887755.4555554333....33689***************************************** PP

                    HHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-S....SSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH-.-.-EEEEEE-E.... CS
  GDP_Man_Dehyd  97 ytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvq....evpqtEttpfyPrsPYaaaKlyadwivvnyreayg.l.favngilfn.... 182
                    +++ +n+lGtl LLe+++++++e   +f+++S+++vYG+++     +p+ E+ p+ P++PY+ +Kl  + i ++ +++++ +  + + ++fn    
     CCD22882.1  99 TYYHNNILGTLVLLELMQKYHVE---KFVFSSSATVYGDATrfpdMIPIPEECPLGPTNPYGQTKLGIENILRDLYNSQKdIwKVAILRYFNpiga 191
                    ********************997...9************9733335889************************977775535258889******** PP

                    EESTTS-TT..SCCCHHHHHHHHHHTTS-C-EEC.TTTT-EEEEEEHHHHHHHHHHHHHCSS---EEE-TT-EEECHHCHHCCHHCCCHHHHHH.. CS
  GDP_Man_Dehyd 183 hesprrget..fvtrkitravarialgkqevlyl.GnldakRdwghvkDyveamwlmlqqdkpedyviatgethsvrefvelaflelgktiewegk 275
                    h s   ge+   + +++ +++a++a+g++e+ly+ Gn +  Rd + ++Dy+++++l+  +  + +y+ a  ++   + + e+++ +        g+
     CCD22882.1 192 HPSGLIGEDplGIPNNLLPYMAQVAVGRREKLYVfGNDYDSRDGTPIRDYIHVVDLAKGHIASLKYLDAIDQK--TGICREWNLGSGT------GS 279
                    *******98778999999**********9999877********************966666655666555544..4444555443332......23 PP

                    ...........TTGGCCCEECGG--SS--SB--B-THHHHHHH----SS-HHHHHH CS
  GDP_Man_Dehyd 276 geeevgra.kesgkvvvevdpkyfrpgevdlllgdaskakeeLgWkpkvsfeelvr 330
                     + ev ra  + + ++++++   +r g+v +l + +++a +eL Wk + ++   ++
     CCD22882.1 280 TVLEVYRAfCDASGIEIPYEITGRRAGDVLNLTAKPDRATKELKWKTELDVSIACK 335
                    3333333223455679*******************************998876665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.3   0.0     2e-55   3.5e-52       1     235 [.       7     264 ..       7     274 .. 0.90

  Alignments for each domain:
  == domain 1  score: 177.3 bits;  conditional E-value: 2e-55
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfiekn 91 
                 +lVtG++G+iGs++v +l e+gye++ +d+l ++s  +  + l         ++++dl+d++ le++f+e+++d vih+A+ + v++s + p  ++++n
  CCD22882.1   7 VLVTGGAGYIGSHTVVELIENGYECVIVDNLCNSSYDSVAR-LeiltkhhiPFYKVDLCDHDGLEKVFQEHNIDSVIHFAGLKAVGESTQIPLTYYHNN 104
                 79*****************************7776554433.258899*************************************************** PP

                 THHHHHHHHHHHHHTCTEEEEEEEGGGGTSCSS....SSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT..-EEEEEEESEEESTT.......S CS
   Epimerase  92 lqgtlnlleaarkagvkrllflsSsevYGkdae....qpkeettltgplkpnspYaaaKlageklveayaaqyg..lnaiilrlfnlyGpr.......n 177
                 + gtl lle ++k++v++++f sS++vYG+ ++    +p  e++   pl p++pY+ +Kl +e++++++ ++++  +++ ilr+fn +G++       +
  CCD22882.1 105 ILGTLVLLELMQKYHVEKFVFSSSATVYGDATRfpdmIPIPEEC---PLGPTNPYGQTKLGIENILRDLYNSQKdiWKVAILRYFNPIGAHpsgligeD 200
                 *******************************9977655799999...********************9655553359*******************966 PP

                 -TTSTTSHHHHHHHHHHTTSSSEEEET......TST-EEEEEEHHHHHHHHHHHHHHHTT-STT CS
   Epimerase 178 gegevsrvipalirkilegkqevtllg......dgtalRdflyveDvaeaillvlehvdagdkg 235
                 + g +++++p++++ +  +++++ ++g      dgt+ Rd+++v D+a+++++ l+  da d++
  CCD22882.1 201 PLGIPNNLLPYMAQVAVGRREKLYVFGndydsrDGTPIRDYIHVVDLAKGHIASLKYLDAIDQK 264
                 6666******99998888779**********************************999988874 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   6.2e-18   1.1e-14       1     129 [.       7     129 ..       7     196 .. 0.76

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 6.2e-18
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE------HHHHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfhaAAlKhVPlve 94 
                      vlvtG++G iGs+ v +++++  + +i+ +    + +++++   e l+k+++ ++      d+ d++ lek+++e+++d v+h A lK V    
       CCD22882.1   7 VLVTGGAGYIGSHTVVELIENGYECVIVDNLCNSSYDSVARL--EILTKHHIPFY----KVDLCDHDGLEKVFQEHNIDSVIHFAGLKAVGEST 94 
                      89******************9999888877777777777764..35666677666....78********************************* PP

                      HSHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEG CS
  Polysacc_synt_2  95 enpleaiktNvlgtenvieaaieagvkkvvliStD 129
                      + pl   ++N+lgt  ++e  ++++v+k+v+ S+ 
       CCD22882.1  95 QIPLTYYHNNILGTLVLLELMQKYHVEKFVFSSSA 129
                      ******************************99973 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   2.9e-17   5.2e-14       1     150 [.       8     160 ..       8     177 .. 0.81
   2 ?   -3.5   0.0       2.3   4.2e+03     210     235 ..     236     261 ..     224     268 .. 0.70

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 2.9e-17
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk.....viegDvtdkdkleealeg..vdvvihlaslvdvag.kltedeimkv 91 
                 +vtGgaG++G++ v eL++ +   e  ++D   +++  +++ ++++ +     + ++D++d+d le++ ++  +d vih a+l  v   ++   ++++ 
  CCD22882.1   8 LVTGGAGYIGSHTVVELIENG--YECVIVDNLCNSSY-DSVARLEILTkhhipFYKVDLCDHDGLEKVFQEhnIDSVIHFAGLKAVGEsTQIPLTYYHN 103
                 69*****************99..58889996666555.55555555444556699**************9733567**********985677889**** PP

   3Beta_HSD  92 nvkGTrnvleacvkagvrvlvYtSsaevvgpnslgeeilngdEeleyeslhqdaypesK 150
                 n+ GT  +le   k  v+++v+ Ssa v g+ ++  +++   Ee ++   ++++y ++K
  CCD22882.1 104 NILGTLVLLELMQKYHVEKFVFSSSATVYGDATRFPDMIPIPEECPLG--PTNPYGQTK 160
                 *******************************88888887666665543..445666666 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.3
   3Beta_HSD 210 evlsdrvYvgNvawahilAaralqdp 235
                   + d++ v  +a+ hi   ++l+  
  CCD22882.1 236 TPIRDYIHVVDLAKGHIASLKYLDAI 261
                 45677888888888888888888754 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   6.4e-13   1.1e-09       2     139 ..       6     171 ..       5     186 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 6.4e-13
                    EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT......................T--TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHH CS
  RmlD_sub_bind   2 kilvtGanGqlGseLakqlaeeglevlaltre......................eldltdaeavaellkeakpdvvvnaAAytavDkaEseeeaay 75 
                    ++lvtG+ G +Gs+ + +l e+g+e++ +++                       ++dl d + ++++++e++ d v++ A  +av +  + +   y
     CCD22882.1   6 RVLVTGGAGYIGSHTVVELIENGYECVIVDNLcnssydsvarleiltkhhipfyKVDLCDHDGLEKVFQEHNIDSVIHFAGLKAVGESTQIPLTYY 101
                    79*************************998778999************************************************************ PP

                    HHHTHHHHHHHHHHHHCT-.EEEEEEEGGGS-S-....TTS-B-TTS----SSHHHHHHHHHHHHHHH.H CS
  RmlD_sub_bind  76 avnaeavealAeaaaavga.lLihvStDyVFdGe....kkrpYeeddetsPlnvYGrtKlaGEqavla.a 139
                    + n  ++  l e+ +++ + ++++ S+  V+  +       p  e+ + +P n YG+tKl  E+  ++ +
     CCD22882.1 102 HNNILGTLVLLELMQKYHVeKFVFSSSATVYGDAtrfpDMIPIPEECPLGPTNPYGQTKLGIENILRDlY 171
                    ****************9984699*******9665577777789*********************999852 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.4e-10   2.5e-07       3     144 ..       7     135 ..       6     139 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.4e-10
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT-- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleemt 101
                 +l+tGG+G +G +++  l+e+g + +++   + +++ ds a+++ l++   ++ ++++D+ d+d +e++++e +     i  vih Ag+ + +  ++  
  CCD22882.1   7 VLVTGGAGYIGSHTVVELIENGYECVIVDNLC-NSSYDSVARLEILTK--HHIPFYKVDLCDHDGLEKVFQEHN-----IDSVIHFAGLKAVGESTQIP 97 
                 69*************************98888.555565556666655..79******************9986.....9********97766655555 PP

                 HHHHHHHHTTTTHHHHHHHHHTTTS--SEEEEEEEHHHHH--T CS
          KR 102 aedleqvlapKvkGawnLhelledesldffvlfSSiagllgsa 144
                        ++  + G+ +L el+++ +++ fv fSS a+++g a
  CCD22882.1  98 LT----YYHNNILGTLVLLELMQKYHVEKFV-FSSSATVYGDA 135
                 54....4566799*****************8.56667777765 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   2.6e-09   4.6e-06       1      97 [.       5      97 ..       5     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.6e-09
                SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCS CS
   adh_short  1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfsels 97
                k vlvtG+++ IG  ++ el+++G+++v+vd+  +     ++ l+ + + ++ +++vD+ d++ +e+++++      ++d +++ AG++ +g+  ++ 
  CCD22882.1  5 KRVLVTGGAGYIGSHTVVELIENGYECVIVDNLCNSSYDSVARLEILtKHHIPFYKVDLCDHDGLEKVFQEH-----NIDSVIHFAGLKAVGESTQIP 97
                679*********************************9999**999999999******************998.....999999999997777666554 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.4e-08   4.4e-05       1     203 [.       9     185 ..       9     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.4e-08
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    +TG+ G++G++ + +L+++  e  +++   ++s+ +  +Rl e l+k+             i +++ Dl++ + GL++  +qe   ++d +ih a+
     CCD22882.1   9 VTGGAGYIGSHTVVELIENGYE-CVIVDNLCNSSYDSVARL-EILTKH------------HIPFYKVDLCDHD-GLEK-VFQEH--NIDSVIHFAG 86 
                    7999999999999999999987.666767777777888888.444444............4567788999998.9975.67776..9********* PP

                    S-S.STTSSE...EHHHHHHHHHHHHHHHTSSS--.-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHHHHH CS
  NAD_binding_4  97 tvnfdepyke...llrvNveGtrevlelakklkklkvllhvSTayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEklvre 189
                       + e+++     +  N++Gt  +lel +k +    +++ S+a+v+g+ + ++ +           +    ++   g +n Y q+K   E+++r+
     CCD22882.1  87 LKAVGESTQIpltYYHNNILGTLVLLELMQKYHVE-KFVFSSSATVYGDAT-RFPD-----------MIPIPEECPLGPTNPYGQTKLGIENILRD 169
                    *9999999975557899**************9888.9************99.5522...........4456667788999**************98 PP

                    HHHH..H---EEEEEE CS
  NAD_binding_4 190 arrr..sglpvvivRp 203
                      ++  + ++v+i+R 
     CCD22882.1 170 LYNSqkDIWKVAILRY 185
                    6543003456777775 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.2e-07   0.00057       1     106 [.      11     136 ..      11     168 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.2e-07
                     TTTSHHHHHHHHHHHHC-T-EEEEEETT.....HHHCHHHH..CTTTCEEEE--TT-CCHHHHHHTT-..SEEEES---TCC.HHHH........ CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRn.....peklaele..aeeglevvegdvtdvedlaealkga..daVvsalggggk.deeg........ 77 
                     G+ G +G++ v el+++g +e  ++v n      +++a+le   + ++   ++d+ d++ l+++++ +  d V+  +g ++  ++++        
      CCD22882.1  11 GGAGYIGSHTVVELIENG-YEC-VIVDNlcnssYDSVARLEilTKHHIPFYKVDLCDHDGLEKVFQEHniDSVIHFAGLKAVgESTQipltyyhn 103
                     999**************5.996.56666553343444444444678999****************977225677666444443222246777766 PP

                     ....HHHHHHHHHHCT--EEEEEEETTTTSGCG CS
  NAD_binding_10  78 ....aknivdaakeagvkRfvlvsaigvgdevp 106
                         +  +++ +++ +v++fv+ s++ v+ ++ 
      CCD22882.1 104 nilgTLVLLELMQKYHVEKFVFSSSATVYGDAT 136
                     677788889*******************97544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4980.54
//
Query:       CCD22883.1  [L=376]
Description: hypothetical protein NDAI_0A07290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-41  142.2   0.0      2e-41  141.5   0.0    1.4  1  AAA             ATPase family associated with various cellula
    1.2e-10   41.0   0.2    2.4e-10   40.0   0.2    1.5  1  AAA_lid_3       AAA+ lid domain
    3.1e-08   33.4   0.0    5.9e-08   32.6   0.0    1.5  1  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
    5.3e-06   25.8   0.0      9e-06   25.0   0.0    1.4  1  DUF815          Protein of unknown function (DUF815)
    8.9e-06   26.0   0.4      0.013   15.7   0.1    2.5  2  AAA_22          AAA domain
    9.5e-06   25.8   0.0    2.6e-05   24.4   0.0    1.7  1  AAA_2           AAA domain (Cdc48 subfamily)
    2.3e-05   24.4   0.1    9.5e-05   22.4   0.1    2.1  1  AAA_5           AAA domain (dynein-related subfamily)
    4.3e-05   24.0   0.1     0.0026   18.2   0.1    2.4  2  AAA_16          AAA ATPase domain
    0.00024   20.9   0.0    0.00053   19.8   0.0    1.6  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
     0.0028   17.9   0.3     0.0065   16.7   0.0    1.7  2  AAA_28          AAA domain
     0.0046   17.0   0.0       0.01   15.9   0.0    1.5  1  AAA_14          AAA domain
     0.0085   16.6   0.5      0.022   15.3   0.0    2.0  1  AAA_18          AAA domain
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.032   14.1   0.0    1.8  1  AAA_3           ATPase family associated with various cellula
      0.011   15.9   0.0      0.024   14.8   0.0    1.5  1  AAA_33          AAA domain
      0.014   15.1   0.0      0.029   14.1   0.0    1.5  1  IstB_IS21       IstB-like ATP binding protein
      0.015   14.5   0.0      0.038   13.2   0.0    1.6  2  TIP49           TIP49 P-loop domain
      0.018   14.4   0.2        0.4   10.0   0.1    2.4  2  ATPase          KaiC
       0.02   14.4   0.4       0.39   10.2   0.1    2.3  2  PhoH            PhoH-like protein
      0.029   14.8   0.0      0.071   13.5   0.0    1.7  1  RNA_helicase    RNA helicase
      0.032   14.2   0.6       0.27   11.1   0.0    2.5  2  NTPase_1        NTPase
      0.044   13.2   0.1      0.094   12.1   0.1    1.4  1  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.062   12.5   0.1       0.36   10.0   0.1    2.2  2  NB-ARC          NB-ARC domain
      0.067   12.5   0.0       0.14   11.4   0.0    1.5  1  Zeta_toxin      Zeta toxin
       0.11   12.5   0.2       0.49   10.3   0.1    2.0  2  NACHT           NACHT domain
       0.12   11.6   0.0       0.18   11.0   0.0    1.4  1  DUF2075         Uncharacterized conserved protein (DUF2075)
       0.13   11.8   0.1       0.37   10.3   0.1    1.8  1  AAA_7           P-loop containing dynein motor region
       0.14   11.7   2.3       0.44   10.1   0.4    2.4  3  AAA_25          AAA domain
       0.15   11.7   1.7       0.26   11.0   0.5    2.1  2  AAA_24          AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.5   0.0   3.1e-44     2e-41       1     131 [.     158     290 ..     158     291 .. 0.95

  Alignments for each domain:
  == domain 1  score: 141.5 bits;  conditional E-value: 3.1e-44
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 v+lyG pGtGKTllakava++++++fl+i gsel++ky+g++++ +r++fk a+e++ psi+fiDEida++++r   +++ ++e +r++ +Ll++ldg+
  CCD22883.1 158 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLVRQIFKVASENS-PSIIFIDEIDAIGTKRydsNSGGEREIQRTMLELLNQLDGF 255
                 79******************************************************9.****************98666677888999999******** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 ++  s+v vi+atn++++ldpal+r gR+drki +e
  CCD22883.1 256 DDT-SEVKVIMATNKIETLDPALIRpGRIDRKILFE 290
                 *96.77***************************987 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.2   3.8e-13   2.4e-10       1      44 [.     313     356 ..     313     357 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 3.8e-13
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 dvd++ L+   +  SGAD++a c eA+llAlr+ + ++t edf+
  CCD22883.1 313 DVDFETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFK 356
                 89******9999*******************************8 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   9.2e-11   5.9e-08       1      56 [.      45      99 ..      45     100 .. 0.97

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 9.2e-11
                    EEEEEEE-TTSSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE CS
  Prot_ATP_ID_OB  1 VatVsEvlddteraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkL 56
                    ++t+ E++dd ++aiV++ +   ++vs+ + v++e L pg  V+++ +t  i+ +L
      CCD22883.1 45 IGTLEEIIDD-DHAIVTSPTMPDFYVSILSFVDKELLGPGCAVSLHHKTMSIVGVL 99
                    79********.***************************************999887 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.4e-08     9e-06      51     116 ..     153     223 ..     106     230 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.4e-08
      DUF815  51 lpannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklvellr...erperfilfvDDL 116
                 +p + v+L+Ga GtGK  l ka+ n+++++ Lr++  e+ ++ l + p+lv+++    +++   i+f+D +
  CCD22883.1 153 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVgsELIQKYLGDGPRLVRQIFkvaSENSPSIIFIDEI 223
                 567789*****************************888999**********9986222567789***9975 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.1e-05     0.013       8      29 ..     158     179 ..     152     190 .. 0.87
   2 !    8.3   0.0    0.0042       2.7      62     127 ..     185     265 ..     179     271 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.1e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++++G +GtGKT+l++ +++q 
  CCD22883.1 158 VILYGAPGTGKTLLAKAVANQT 179
                 689*****************97 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0042
      AAA_22  62 ralglelka.erlsseellealeqalraravielliiDEaqhlr.....s.........eealeeLrsllnl.srkgvqliL 127
                 r++g+el   + ++  +l++++ + +++ +  +++ iDE++ +      s          ++le L +l  + +++ v++i+
  CCD22883.1 185 RIVGSELIQkYLGDGPRLVRQIFKVASENSP-SIIFIDEIDAIGtkrydSnsggereiqRTMLELLNQLDGFdDTSEVKVIM 265
                 5555555554555667777777777777777.9**********887665166788888877777776666556688888886 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   4.1e-08   2.6e-05       7     104 ..     159     250 ..     154     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 4.1e-08
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqil 103
                 +l g  g+Gkt+laka+a+  ++    ++ r+  sel++    + l +     ++  + a e+   i+++DEid i  k+  ++   + ++qr +L +l
  CCD22883.1 159 ILYGAPGTGKTLLAKAVANQTSA----TFLRIVGSELIQ----KYLGDGPRLVRQIFKVASENSpsIIFIDEIDAIGTKRYDSNSGGEREIQRTMLELL 249
                 5668889*************996....************....88888776666666666666668************988888888899*******99 PP

                 H CS
       AAA_2 104 e 104
                  
  CCD22883.1 250 N 250
                 6 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   1.5e-07   9.5e-05       1      84 [.     157     233 ..     157     279 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.5e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGGG--HHHHHH CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEveraesevlns 84 
                 +v+L G+pGtgK+ la+ +a  + ++++ + +++      l++++   +++ +lv ++++ a + +++i+++DE++ + ++  +s
  CCD22883.1 157 GVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE------LIQKYL--GDGPRLVRQIFKVASEnSPSIIFIDEIDAIGTKRYDS 233
                 59**************************999986......999999..7888899999998887899********9887665555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   4.1e-06    0.0026      24      51 ..     146     182 ..     125     196 .. 0.69
   2 ?    3.4   0.0      0.14        88     121     147 ..     201     226 ..     187     259 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.1e-06
      AAA_16  24 p.........elvllsGesGvGKsslvrellralekd 51 
                             v+l+G++G+GK+ l+++++++ +++
  CCD22883.1 146 LyeemgikppKGVILYGAPGTGKTLLAKAVANQTSAT 182
                 344455555699******************9866554 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
      AAA_16 121 ellkrllallsrderplvlvlDdlqwa 147
                 +l++++++ +s+  +p ++++D+++ +
  CCD22883.1 201 RLVRQIFKVASE-NSPSIIFIDEIDAI 226
                 677888899998.888********943 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   8.3e-07   0.00053      35      96 ..     157     226 ..     131     231 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 8.3e-07
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvk.lkitsgPvleka.gd...laalltnl...eekdvlfideihrl 96 
                  v+lyG+PG Gkt lak +a++  ++ l+i  +  ++k  gd   l+  + ++   ++  ++fidei  +
  CCD22883.1 157 GVILYGAPGTGKTLLAKAVANQTSATfLRIVGSELIQKYlGDgprLVRQIFKVaseNSPSIIFIDEIDAI 226
                 699******************99887257777788887435533344333333111334699***99765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     1e-05    0.0065       2      37 ..     158     198 ..     157     220 .. 0.76
   2 ?   -2.8   0.1        10   6.4e+03      48      71 ..     337     359 ..     323     364 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1e-05
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv.pEaareilee 37 
                 +++ G+++tGKT l++a a++      ++v  E   ++l +
  CCD22883.1 158 VILYGAPGTGKTLLAKAVANQtsatFLRIVgSELIQKYLGD 198
                 789****************8744434555556666666554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 10
      AAA_28  48 wvedllafaervleeqleeeaaaa 71 
                 + + lla++er+++  +e+ ++a+
  CCD22883.1 337 E-AGLLALRERRMQVTAEDFKQAK 359
                 3.4778888888888888887775 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.6e-05      0.01       5      76 ..     158     226 ..     155     268 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ Ga  +GKT l+k ++++       +l i   +  +k l d  +l + i++ ++e+  +++f+DEi  +
  CCD22883.1 158 VILYGAPGTGKTLLAKAVANQTS---ATFLRIVGSELIQKYLGDGPRLVRQIFKVASENSPSIIFIDEIDAI 226
                 899***************98877...77777776665555555544677888887666799********987 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.4e-05     0.022       1      44 [.     158     222 ..     158     277 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.4e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....................gvnlrdvakenglllevdpe 44 
                 ++l G+pG+GKt lak++++ +                       ++++ +va+en +++ + +e
  CCD22883.1 158 VILYGAPGTGKTLLAKAVANQTSAtflrivgseliqkylgdgprlVRQIFKVASENSPSIIFIDE 222
                 79****************99872247777766666666666666666666666666666655555 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.9e-05     0.032       2      30 ..     158     186 ..     157     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.9e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 v+l g+PG++ktll+ka+a++ +++f ri
  CCD22883.1 158 VILYGAPGTGKTLLAKAVANQTSATFLRI 186
                 7899**********************998 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.7e-05     0.024       2      29 ..     158     185 ..     158     218 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.7e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavlls 29 
                 v+l G+pG+GK+ la+ +++++ a++l+
  CCD22883.1 158 VILYGAPGTGKTLLAKAVANQTSATFLR 185
                 7899***************999955543 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.6e-05     0.029      46      72 ..     154     180 ..     141     193 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.6e-05
   IstB_IS21  46 kkenivllGpsGvGKshlaialgveav 72 
                   ++++l G +G+GK+ la a++ ++ 
  CCD22883.1 154 PPKGVILYGAPGTGKTLLAKAVANQTS 180
                 56789****************998865 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.9e-05     0.038      51      90 ..     156     193 ..     145     210 .. 0.87
   2 ?   -3.8   0.0       8.9   5.7e+03      42      85 ..     277     321 ..     276     324 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevys 90 
                 ++v+l G +gtGkt la a++++ +    f  ++gse+ +
  CCD22883.1 156 KGVILYGAPGTGKTLLAKAVANQTS--ATFLRIVGSELIQ 193
                 89*******************9977..78*******9865 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 8.9
                 XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX.XXXXXXXXXXXXX CS
       TIP49  42 likekklaGravLlaGpsgtGk.talaiaisk.elgedvpfvalsg 85 
                 li+ +++  r +L+  p  + k   l i  sk +l++dv f +l++
  CCD22883.1 277 LIRPGRID-RKILFENPDLSTKrKILGIHTSKmNLSSDVDFETLVT 321
                 67777776.6666666654444156677777746888888877765 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00062       0.4      14      38 ..     150     174 ..     123     185 .. 0.84
   2 ?    1.8   0.0       0.2   1.3e+02     105     154 ..     200     252 ..     189     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00062
      ATPase  14 gGipegrvvlitGepGtGKtifalq 38 
                  Gi   + v ++G pGtGKt++a+ 
  CCD22883.1 150 MGIKPPKGVILYGAPGTGKTLLAKA 174
                 5888888899************975 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.2
      ATPase 105 eelieelaeaikeikakrvviDsitgl...ayeekeavaReilrqlvrvlkkl 154
                   l++++ ++ +e   + + iD i+++    y++++   Rei r++++ l++l
  CCD22883.1 200 PRLVRQIFKVASENSPSIIFIDEIDAIgtkRYDSNSGGEREIQRTMLELLNQL 252
                 56888889999999999999999999873234455555777777777777665 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0006      0.39      22      42 ..     158     178 ..     147     187 .. 0.84
   2 ?    2.1   0.0      0.17   1.1e+02      76     116 ..     241     281 ..     224     368 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0006
                 EEEE--TTSSTTHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalave 42 
                 v+  G  GtGKt+la a+a +
  CCD22883.1 158 VILYGAPGTGKTLLAKAVANQ 178
                 7899***********999865 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
                 --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT- CS
        PhoH  76 vdpylrplydaLkdllgaekvekllekgkievaplaymRGr 116
                 ++  +  l ++L+ + ++++v+ ++ ++kie+++ a +R  
  CCD22883.1 241 IQRTMLELLNQLDGFDDTSEVKVIMATNKIETLDPALIRPG 281
                 5666777888999999999***************9999944 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   0.00011     0.071       1      26 [.     158     183 ..     158     235 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00011
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl 26 
                   ++lyG++g+GK++lak +a++ + ++
    CCD22883.1 158 VILYGAPGTGKTLLAKAVANQTSATF 183
                   689**************887766555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.87   5.6e+02     104     122 ..     123     141 ..     121     146 .. 0.86
   2 ?   11.1   0.0   0.00043      0.27       2      90 ..     158     250 ..     157     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.87
                 -STTGGG-HHHHHHHHHHH CS
    NTPase_1 104 iGkmElkskkfkeaveevL 122
                 iG +E +++++keave  L
  CCD22883.1 123 IGGLEAQIQEIKEAVELPL 141
                 9*************98655 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00043
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEEE.EEEEE-------EEEEEET.T--EEEEEETT---SSEETTEEE-HHH...HHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgGf.yteevreggrrigFkivdlasgeegiLarveakreprvgkyvvdves...feelalealr 90 
                 v++ G pG+GKt l k v+++ +   +++ G  + +++  +g r   +i ++as++   +   ++   +  ++y  +      +++ +le l+
  CCD22883.1 158 VILYGAPGTGKTLLAKAVANQTSATFLRIVGSeLIQKYLGDGPRLVRQIFKVASENSPSIIFIDEIDAIGTKRYDSNSGGereIQRTMLELLN 250
                 7889*******************9999999973679999*************99999888888866666666666554332225555555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00015     0.094      25      43 ..     158     176 ..     152     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   ++l+G+pG+GKt+lak+++
    CCD22883.1 158 VILYGAPGTGKTLLAKAVA 176
                   79*************9875 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.77     5e+02     184     207 ..      28      51 ..       6      59 .. 0.71
   2 ?   10.0   0.1   0.00057      0.36      23      45 ..     158     180 ..     146     270 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.77
                 HHHHHHHHHHCTT-HHHHHHHHHH CS
      NB-ARC 184 eevakeivekckGlPlalkvlggl 207
                 +e  k+  ++ +G+Pl++ +l ++
  CCD22883.1  28 QEEEKKQLQEIRGNPLSIGTLEEI 51 
                 444567778899****99988766 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00057
                 EEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC  23 valvGmgGvGKttlakqilnksd 45 
                 v l+G +G GKt lak + n+ +
  CCD22883.1 158 VILYGAPGTGKTLLAKAVANQTS 180
                 789***************99854 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00021      0.14      15      49 ..     154     186 ..     146     195 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
  Zeta_toxin  15 rPklillgGqpGAGKselaellkdelerqgnvvrl 49 
                  Pk ++l G+pG GK+ la+++++++     ++r+
  CCD22883.1 154 PPKGVILYGAPGTGKTLLAKAVANQT--SATFLRI 186
                 6999******************9997..5666665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00076      0.49       3      23 ..     158     178 ..     156     185 .. 0.89
   2 ?   -1.2   0.0       2.6   1.6e+03      59     114 ..     193     250 ..     184     252 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00076
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 vil G++G GKT L++ +a +
  CCD22883.1 158 VILYGAPGTGKTLLAKAVANQ 178
                 89**************99875 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.6
                 CCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH............HHHHHC CS
       NACHT  59 fsqlpepaapvsevwavllelperlLlilDglDelvtdlgq...kekqpvrtlLselir 114
                  + l +  + v+++++v  e+  ++ + +D +D + t+       +++++++ + el++
  CCD22883.1 193 QKYLGDGPRLVRQIFKVASENSPSIIF-IDEIDAIGTKRYDsnsGGEREIQRTMLELLN 250
                 555555566677767777777777766.5888888876555556555666666666665 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00029      0.18       4      25 ..     158     179 ..     155     234 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00029
     DUF2075   4 vlVtGvaGtGKtvvllnllael 25 
                 v+  G++GtGKt+++ +++++ 
  CCD22883.1 158 VILYGAPGTGKTLLAKAVANQT 179
                 6789***********9999987 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00058      0.37      32      58 ..     154     180 ..     146     238 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00058
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkld 58 
                   k v+l+G  GtGKt+++k + ++ +
  CCD22883.1 154 PPKGVILYGAPGTGKTLLAKAVANQTS 180
                 56789***************9998877 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4   0.00069      0.44      36      54 ..     158     176 ..     150     188 .. 0.87
   2 ?   -0.2   0.0      0.96   6.2e+02     129     165 ..     202     241 ..     190     266 .. 0.70
   3 ?   -3.5   0.0       9.7   6.2e+03     106     137 ..     329     362 ..     316     366 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00069
      AAA_25  36 allaGapgtGKttlaldla 54 
                 ++l+GapgtGKt la  +a
  CCD22883.1 158 VILYGAPGTGKTLLAKAVA 176
                 69************97665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.96
      AAA_25 129 dvdaleaaieevegvrlvviDplsralgg..densnsd..v 165
                  v+++ +++ e + +  + iD ++++     d+ns  +  +
  CCD22883.1 202 LVRQIFKVASE-NSPSIIFIDEIDAIGTKryDSNSGGEreI 241
                 57788888888.78999999999997666557776655432 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 9.7
      AAA_25 106 ldlagv.eslpLfak.drggtlltadvdaleaai 137
                  d++ + ++  L+a+ +r+++++++d+++  +++
  CCD22883.1 329 ADIQAMcTEAGLLALrERRMQVTAEDFKQAKERV 362
                 5555555444444332566666777776665555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   0.00041      0.26       5      22 ..     158     175 ..     155     272 .. 0.88
   2 ?   -2.3   0.0       4.8   3.1e+03      31     181 ..     336     361 ..     308     371 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00041
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +++yG +g+GKT lak  
  CCD22883.1 158 VILYGAPGTGKTLLAKAV 175
                 789************987 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.8
      AAA_24  31 tekGlksldadkfpdieswedfldevvelaaeladyktlviDtideleelclaevirqnekaeskedkgdgkGygelaeefrrllkklqelrknvifia 129
                 te+Gl +l  ++++                                                                                     
  CCD22883.1 336 TEAGLLALRERRMQ------------------------------------------------------------------------------------- 349
                 34444444444433..................................................................................... PP

      AAA_24 130 hektrkdedpegeakytrlepklgkktanelkeevDlvlranlkred......kvger 181
                                                               +      +  er
  CCD22883.1 350 ----------------------------------------------VtaedfkQAKER 361
                 ..............................................022233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 2559.82
//
Query:       CCD22884.1  [L=315]
Description: hypothetical protein NDAI_0A07300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-67  227.4   0.2    1.4e-52  178.9   0.1    2.1  2  PP2C      Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   1.6e-16     3e-12      27     110 ..      42     126 ..      20     128 .. 0.85
   2 !  178.9   0.1     8e-57   1.4e-52     111     258 .]     167     301 ..     141     301 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.8 bits;  conditional E-value: 1.6e-16
                 TTCCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTH......HHHHHHHHHHHHHHHHHHHHHHHHCHCCT-EEEEEEEEEE CS
        PP2C  27 sssgkssvsffavfdghggseaakyarehleeilksqksfeele......kleqalrksfladtdeelksskantepsksGstavvalir 110
                    ++ ++++fa+fdgh+g +a+k+++++l+ i++++   ++ e      +++++l++sfl   d+++++    +++ +sG+ta v+++r
  CCD22884.1  42 TFASRLDWGYFAIFDGHAGFQASKWCGSNLHSIIEEKLLNNDNEdgsanvDVRDILNESFLI-VDKQINT----QLEGNSGCTAAVCVLR 126
                 336799*************************999999999999999999*************.7888887....2579*******99876 PP

  == domain 2  score: 178.9 bits;  conditional E-value: 8e-57
                 TTEEEEEEESS-EEEEEETTEEEEECS---STTSHHHHHHHHHTT--EEECCEEETTTBSBSB-EE-GGGTCCCCCCSTSB---EEEEEEE-TTEEEEE CS
        PP2C 111 gtklyvAnvGDSravLcrkgnakkeltedHkpsdedEreRIeeaggsvsngegrvngsLavsRalGDlelkpketeeqlvsaePdvtsvklteedefli 209
                 + kly+AnvGDSr+vL+r+g+++ +lt+dHk+sd  E++R+eeagg ++  + rvng+Lav+R+lGD+++ +      lv++ P +tsv+l ++defli
  CCD22884.1 167 KRKLYTANVGDSRIVLFRNGHSI-RLTYDHKASDLLEMKRVEEAGGLIM--KSRVNGMLAVTRSLGDKFFDS------LVISNPFTTSVELIDSDEFLI 256
                 345********************.*************************..9*******************9......********************* PP

                 EE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCHHCHC CS
        PP2C 210 LacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiargsedni 258
                 +acdGlwdv++dq+a++l++d  +    p+e+a++lv++a+++g++dn+
  CCD22884.1 257 IACDGLWDVIDDQDACELIQDIKD----PKEAAKKLVKYALENGTTDNV 301
                 ********************9888....9******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2499.70
//
Query:       CCD22885.1  [L=457]
Description: hypothetical protein NDAI_0A07310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-35  119.3  15.0    6.5e-35  119.3  15.0    4.6  4  Med2           Mediator complex subunit 2
  ------ inclusion threshold ------
       0.21   10.1  31.8       0.28    9.7  31.8    1.2  1  Utp14          Utp14 protein
        2.6    6.9  36.4      0.086   11.9  24.2    2.1  2  SLC12          Solute carrier family 12


Domain annotation for each model (and alignments):
>> Med2  Mediator complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3  15.0   1.1e-38   6.5e-35       2      97 ..      47     146 ..      46     150 .. 0.90
   2 ?  -18.6  24.8         3   1.8e+04      99      99 ..     161     161 ..     135     192 .. 0.52
   3 ?   -3.1   2.1       1.5   9.2e+03      38      38 ..     228     228 ..     190     278 .. 0.67
   4 ?    0.3   1.3      0.13   7.7e+02      28      88 ..     280     341 ..     259     353 .. 0.57

  Alignments for each domain:
  == domain 1  score: 119.3 bits;  conditional E-value: 1.1e-38
        Med2   2 lenkLtqclddiLkvsgemlvqeqlktiqldsnvvtGfnnqlqksLkekikkFhsiLDdleiklndaksyveqlveikkekeeekeke....eeerqrk 96 
                 ++nkLtqc+ddiLk+s+em+vq+qlktiqldsn+++Gfn+++q+sLkeki++Fh+iLDdlei++n++ +y++++++i+ ek++e++k+    e+e+++k
  CCD22885.1  47 KTNKLTQCFDDILKLSTEMMVQQQLKTIQLDSNLINGFNENQQNSLKEKINSFHGILDDLEISINKSLTYLDTISKISIEKRKENIKTkilkEQEEKEK 145
                 689***************************************************************************999999999966554444444 PP

        Med2  97 e 97 
                 e
  CCD22885.1 146 E 146
                 3 PP

  == domain 2  score: -18.6 bits;  conditional E-value: 3
        Med2  99 e 99 
                 e
  CCD22885.1 161 E 161
                 2 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.5
        Med2  38 G 38 
                  
  CCD22885.1 228 N 228
                 1 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.13
        Med2  28 tiqldsnvvtGfnnqlqksLkekikkFhsiLDdle.iklndaksyveqlveikkekeeekek 88 
                 ti  + n+ + ++n+ +  ++++ ++  +i  dl+ + ++ + + v++ + ++ ++++++++
  CCD22885.1 280 TINPNVNIPNPTTNAITTHINNNNSMNGDIFTDLDaMDISISPDLVNTTSVENSQQQQQQQQ 341
                 55555566666666666666666666666655554234555556665544333333333332 PP

>> Utp14  Utp14 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  31.8   4.7e-05      0.28     360     573 ..     124     408 ..      66     451 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 4.7e-05
       Utp14 360 kleklkeeeeke..eeeeeeepekgllamkFmkraearkkeendeeieelrrelekgdeeeedeeeeeeee...............kesknvGrrvfgp 441
                 ++ek ke+ +++  +e+ee+e+ek+l  +k  +++e+++ e++  ++++ ++ele++ ++ ++e+   e++               ++++n ++++ ++
  CCD22885.1 124 SIEKRKENIKTKilKEQEEKEKEKQLELLKQKQKQEQEEAEAQALKLKQEEEELERKRKQRKEEQ---EQQmlltnkkspidnnnnNNNNNNDNNINNN 219
                 33333333333333334444444555444444444444444444444444444443322222222...1111233222222111101111222222222 PP

       Utp14 442 skkskkkekkkkkkeskakkekreeeeedeskaaeekakke.......................................................... 482
                        + ++++++++++++k++++     +a++++++ +                                                          
  CCD22885.1 220 -------NDNNNNNNNNNNNNKNNNNLIPITTANNNNND-Ntgllgdiqlnfsneaidndllanfnsntinpnvnipnpttnaitthinnnnsmngdif 310
                 .......12222222233333333333333333333333.14788899999999999999999999988888888888888888888888888888888 PP

       Utp14 483 ...............kskksekkkkkkkeesakeeeeeeeenpwlaeeekkkskkeevaaekssskakkskakakkkkkksskkkeaakekkkkdeeid 566
                                ++++ e++++   ++++++   ++e++p  +  + + + ++ +  +  s+++++s+ + ++ ++++++   +++++++++  +d
  CCD22885.1 311 tdldamdisispdlvNTTSVENSQQ---QQQQQQIPITNEQQPPDN--TLDLTTSSGAGMDPLSNNKDNSNTNINNITDTNNN---DNNNNNNNNPLLD 401
                 8888877777766542222222211...222222222333333322..11222222222333333333333333322222222...2222344555555 PP

       Utp14 567 lkkketl 573
                 l+ ++  
  CCD22885.1 402 LNLDTGN 408
                 5543333 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  24.2   1.4e-05     0.086      37     225 ..      36     234 ..       9     270 .. 0.51
   2 ?    1.1   4.2     0.027   1.6e+02     139     210 ..     331     392 ..     292     427 .. 0.39

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.4e-05
       SLC12  37 tkkaqkwLkkrkikaFyalvdaesleegakaLlqas.GlgklkpnilllGyksdWqtcekeeleeYfnvihd.afdlklavaiLrlkegldvsellqee 133
                  +  ++ L++rk++   + + ++ l+  +++++q +    +l  n l+ G+ ++ q++ ke+++++ +++ d  + ++ +++ L + +++ +++  ++ 
  CCD22885.1  36 GSVPSSLLENRKTNKLTQ-CFDDILKLSTEMMVQQQlKTIQLDSN-LINGFNENQQNSLKEKINSFHGILDDlEISINKSLTYLDTISKISIEKRKENI 132
                 555667777777777666.44455666666666544122344444.778*********************98458999999999999999999888777 PP

       SLC12 134 eeeeeekekkeaeese.....keeeekkkakkkklle........ekskekeekekleekdsnlslseekk.......eeekekkkekkkkkekkeklk 212
                 +++  ++++++++e++     +++++++++++    +        e ++ ++++++ +e+++++ l ++kk       +     +++++++++ ++++ 
  CCD22885.1 133 KTKILKEQEEKEKEKQlellkQKQKQEQEEAE----AqalklkqeE-EELERKRKQRKEEQEQQMLLTNKKspidnnnN-----NNNNNNDNNINNNND 221
                 66666555555555556654311111111111....1123344321.22222222222222222222222233322110.....111111111111111 PP

       SLC12 213 kkekslllkeask 225
                 ++++++ +++++k
  CCD22885.1 222 NNNNNNNNNNNNK 234
                 1111111111111 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.027
       SLC12 139 ekekkeaeese...keeeekkkakkkklle........................ekskekeekekleekdsnlslseekkeeekekkkekkkkkekkek 210
                 e++++++++++   +              +                        +            + +sn+++++ ++           ++++++++
  CCD22885.1 331 ENSQQQQQQQQipiT--------------NeqqppdntldlttssgagmdplsnN------------KDNSNTNINNITD-----------TNNNDNNN 392
                 111111111111111..............01111111111111222222222111............1111111111111...........11111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4223  (0.23554); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                       242  (0.0134977); expected 17.9 (0.001)
Passed Fwd filter:                        62  (0.00345808); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.37u 0.36s 00:00:01.73 Elapsed: 00:00:00.50
# Mc/sec: 2750.68
//
Query:       CCD22886.1  [L=108]
Description: hypothetical protein NDAI_0A07320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-28   98.3   0.1      2e-28   98.1   0.1    1.0  1  Thiamine_BP  Thiamine-binding protein


Domain annotation for each model (and alignments):
>> Thiamine_BP  Thiamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.1   1.1e-32     2e-28       1      91 [.      10     100 ..      10     101 .. 0.99

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 1.1e-32
                  EEEEEEECSSSSSGHHHHHHHHHHHHHTTSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHCTTSSEEEEEEEEEEESSS---HHHHHHHH CS
  Thiamine_BP   1 veisviPlgtegesvskyVakvvevlkesglkyeltpmgTtiegeldevmevvkkahealfeaGakRvstvikiddrrdkeqtleeKvksv 91 
                  ++i+++P+gt+++svs++Va +   ++es+lk +l++ gTtieg++devm+++  +he+ +e+G+ R+++ ++i +r dk+qt+++K+++v
   CCD22886.1  10 ADICMVPIGTSSASVSDFVALIETKIRESELKSTLHSAGTTIEGPWDEVMNLIGSIHEYAHENGYIRIQSDVRIGTRVDKHQTAQDKIDTV 100
                  69**************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 845.89
//
Query:       CCD22887.1  [L=159]
Description: hypothetical protein NDAI_0A07330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-17   63.3   7.1      4e-17   62.8   7.1    1.2  1  Histone        Core histone H2A/H2B/H3/H4
    1.2e-05   25.5   0.1    2.3e-05   24.6   0.1    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0021   18.5   0.0     0.0042   17.6   0.0    1.4  1  TFIID_20kDa    Transcription initiation factor TFIID subunit 
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.034   14.4   0.0    1.5  1  CENP-W         CENP-W protein
        1.6    6.6   8.8        1.7    6.5   8.8    1.1  1  Dicty_REP      Dictyostelium (Slime Mold) REP protein


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   7.1   1.1e-20     4e-17       4     130 ..      13     132 ..       5     133 .. 0.76

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 1.1e-20
                 ESXEEEXXXXEEXXXXXXXXXXHTTS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHH CS
     Histone   4 ekekarkesektapekkvsakkerkasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallve 102
                 ++++++k++++ + ++  ++k+++   sk    kk++++++      i +++ +t++++ + ++++v+++ ++    d +is++++ +l++++++++++
  CCD22887.1  13 TTTTTTKTTNIVKMSSVAEKKPTA---SKAPAEKKPTAARRPLQVPLISRRDLKTRKETNSSYIYKVLKQTHP----DTGISQKSMSILNSFVNDIFER 104
                 444555555555444444444433...33344444445555555555667777788888889***********....********************** PP

                 HHHHHHHHHHHTTXSEEXHHHHHHHHHH CS
     Histone 103 lfeeAnllakhaKRvTitpkDiqlArrl 130
                 +++eA++la ++K++Ti +++iq+A+rl
  CCD22887.1 105 IATEASKLAAYNKKSTISAREIQTAVRL 132
                 ***************************7 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.1   6.3e-09   2.3e-05       8      65 .]      73     130 ..      70     130 .. 0.96

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 6.3e-09
                    HHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   8 vkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                    + k++k++ pd++ i++ +  +++ +v    e++a+eA++++  +k+ ti+a  i+ Av
     CCD22887.1  73 IYKVLKQThPDTG-ISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAV 130
                    789*****88888.******************************************998 PP

>> TFIID_20kDa  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.2e-06    0.0042       7      60 ..      75     128 ..      71     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
                  HHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHH CS
  TFIID_20kDa   7 dLvqqvdsetkldedvedlLleiaddFvesvtkfacklakhRksdklevrDiql 60 
                    ++q  ++t + ++   +L   ++d  e + + a+kla + k +++++r iq 
   CCD22887.1  75 KVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQT 128
                  567888999999999999**********************************95 PP

>> CENP-W  CENP-W protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   9.5e-06     0.034       7      83 ..      57     134 ..      53     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.5e-06
      CENP-W   7 vsqrklikrk.aprgflkrvlkrrkphlrleascdllvhlncllfirrlaeesrtnacenksgvikkdhvlaaakvil 83 
                 +s+r l  rk +  +++ +vlk+ +p  ++++++  ++      + +r+a e+   a  nk   i    + +a ++il
  CCD22887.1  57 ISRRDLKTRKeTNSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLIL 134
                 7899887777245789**************999877766666667899999999999999999999999999988887 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.8   0.00048       1.7     251     354 ..       4     104 ..       1     131 [. 0.64

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00048
   Dicty_REP 251 keknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfskkssrksgslkdvrvdnisdseldddvnesispeekiisvsn 349
                 ++++k + +tttttt t++ ++  + a ++ + s+++a++k+  ++++ + p  ++++  +rk+ +   +       +++++d+++s++  + + s  n
  CCD22887.1   4 SQQQKVIAQTTTTTTKTTNIVKMSSVAEKKPTASKAPAEKKPTAARRPLQVPLISRRDLKTRKETNSSYIYKVL---KQTHPDTGISQKSMSILNSFVN 99 
                 33444455555555444444444444444445566666667777788888888888888888888776654322...4578888888888888888888 PP

   Dicty_REP 350 kikqc 354
                  i + 
  CCD22887.1 100 DIFER 104
                 77554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1313  (0.0732333); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1235.27
//
Query:       CCD22888.1  [L=132]
Description: hypothetical protein NDAI_0A07340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-21   74.6   1.1    6.1e-21   73.9   1.1    1.4  1  Histone_H2A_C  C-terminus of histone H2A
    1.7e-17   64.0   0.0    2.3e-17   63.6   0.0    1.2  1  Histone        Core histone H2A/H2B/H3/H4
    7.7e-06   26.1   0.0    1.2e-05   25.5   0.0    1.3  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
  ------ inclusion threshold ------
      0.043   13.7   0.0      0.065   13.2   0.0    1.3  1  LcrG           LcrG protein


Domain annotation for each model (and alignments):
>> Histone_H2A_C  C-terminus of histone H2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   1.1   1.4e-24   6.1e-21       1      35 []      93     127 ..      93     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 1.4e-24
  Histone_H2A_C   1 EELnkLLggVTIAqGGVLPnIhkvLLpkktkkkkk 35 
                    +ELnkLLg+VTIAqGGVLPnIh++LLpkk++k++k
     CCD22888.1  93 DELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKAAK 127
                    7*******************************986 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   5.2e-21   2.3e-17      45     129 ..       7      90 ..       4      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 5.2e-21
                 HHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  45 tvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                  +a+   +++q+++++ +  +p+ Rv+r ++      +ri + a+++l+++lE+l +e++e+A+++a+++K+ +i p+++qlA+r
  CCD22888.1   7 GKAGSTAKASQSRSAKAGLTFPVGRVHRLLRR-GNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 90 
                 56778899***********************8.9999***********************************************9 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.6e-09   1.2e-05       2      65 .]      26      89 ..      25      89 .. 0.97

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.6e-09
                   XXXHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  2 eLPiarvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                    +P+ rv ++++  + a++i + A+++++ ++e  + e+++ A   + ++k+  i + h++lA+
     CCD22888.1 26 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAI 89
                   69***********************************************************997 PP

>> LcrG  LcrG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.5e-05     0.065      13      58 ..      86     131 ..      73     132 .] 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
        LcrG  13 elairdsdeRakllqel.leglGlapeageklfggleaelvkaaeqe 58 
                  lair+ de +kll ++ +++ G+ p++ ++l+ +++a+ +k a qe
  CCD22888.1  86 QLAIRNDDELNKLLGNVtIAQGGVLPNIHQNLLPKKSAKAAK-ASQE 131
                 79************997357789***********99998776.4555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1049.18
//
Query:       CCD22889.1  [L=522]
Description: hypothetical protein NDAI_0A07350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-57  193.5   1.9    5.5e-57  192.7   1.9    1.4  1  DUF155    Uncharacterised ACR, YagE family COG1723
  ------ inclusion threshold ------
      0.019   15.4   0.1       0.12   12.8   0.1    2.4  2  UPF0449   Uncharacterised protein family UPF0449


Domain annotation for each model (and alignments):
>> DUF155  Uncharacterised ACR, YagE family COG1723
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.7   1.9   6.1e-61   5.5e-57       1     176 []     296     468 ..     296     468 .. 0.95

  Alignments for each domain:
  == domain 1  score: 192.7 bits;  conditional E-value: 6.1e-61
      DUF155   1 vfiFknGsvVfwgldeeeeknflnkllkflneeselpreeeqeteeleyvydeqsessrikgdvivl.kskslleklaiShalaqSvkLdvlEesldel 98 
                 +fiF++G++V+wg++e+eek+fln+l+kf +e+  l +e++q  ee++y+ ++ s+++ri++d i+l + ++ ++kl+iSha+aqSvk++++Ee++d++
  CCD22889.1 296 LFIFEYGVIVMWGFTEREEKRFLNDLEKFEKEK--LAEEDIQ-IEEFNYYVTK-SYQPRIYNDFITLrDGSNYMTKLSISHAIAQSVKISLFEELVDNT 390
                 6****************************7776..5666666.899*998876.999**********77779*************************** PP

      DUF155  99 lestekipkelakkgklklsrkellkktgellslrinlnlkselldtPdffWeepeleslyeavseyleikeRikiLn 176
                 +e t++ip+e+a++gk++++++e++k++gel+ lrin+nl+ ++ld+P+++W+ep+le++y+a++ ylei++R+ +Ln
  CCD22889.1 391 IEDTQDIPQEIASSGKVSMTKEEIMKSIGELFILRININLHGSVLDSPEIMWSEPQLEPIYQATRGYLEINQRVALLN 468
                 *****************************************************************************9 PP

>> UPF0449  Uncharacterised protein family UPF0449
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.73   6.5e+03      57      71 ..     157     171 ..     146     186 .. 0.73
   2 ?   12.8   0.1   1.3e-05      0.12      54      98 ..     444     488 ..     425     491 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.73
     UPF0449  57 veelYeqvrtyleln 71 
                  ee+Y qv++ ++  
  CCD22889.1 157 NEEVYSQVNKIMDKP 171
                 689999999988764 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.3e-05
     UPF0449  54 eaeveelYeqvrtylelnerLeeakeeLkqkceeLktageeLeee 98 
                 e + e +Y+ +r yle+n+r    +++L+   + L+ + e+L ++
  CCD22889.1 444 EPQLEPIYQATRGYLEINQRVALLNQRLEVISDLLQMLKEQLGHS 488
                 567999********************************9999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1154  (0.064365); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3579.40
//
Query:       CCD22890.1  [L=417]
Description: hypothetical protein NDAI_0A07360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-12   47.7   0.0    4.9e-12   46.1   0.0    2.0  1  HMG_box      HMG (high mobility group) box
    3.2e-10   40.4   0.0    9.4e-10   39.0   0.0    1.9  1  HMG_box_2    HMG-box domain
  ------ inclusion threshold ------
      0.083   12.9   0.4       0.21   11.7   0.4    1.7  1  MCC-bdg_PDZ  PDZ domain of MCC-2 bdg protein for Usher syndro


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   8.2e-16   4.9e-12       1      69 []      98     162 ..      98     162 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 8.2e-16
                 --SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69 
                 pkRp++a+++f++ ++++l++  +     ++++ l+e Wk+l e  + +Y++ ++++++ry++e++ y+
  CCD22890.1  98 PKRPTNAYLIFCEMNKENLRSNGS----LDVTRDLSELWKSLDETGRSPYFDLYNQDRERYRSEMETYN 162
                 8*******************9875....69************************************996 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.6e-13   9.4e-10       1      73 []      95     162 ..      95     162 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.6e-13
                 ---.-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS--- CS
   HMG_box_2   1 pkkpkaarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkkrydrealtyd 73 
                 p+ pk+++nAY++f    +++l+ +     g  +v++ +se Wk+l e  +++Y +  ++d++ry++e+ ty+
  CCD22890.1  95 PNLPKRPTNAYLIFCEMNKENLRSN-----GSLDVTRDLSELWKSLDETGRSPYFDLYNQDRERYRSEMETYN 162
                 788************9999999988.....789*************************************997 PP

>> MCC-bdg_PDZ  PDZ domain of MCC-2 bdg protein for Usher syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   3.4e-05      0.21       2      29 ..      10      37 ..       9      43 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.4e-05
  MCC-bdg_PDZ  2 LksrIeeLkaqnelLsltleerkqqsee 29
                 Lk++IeeLk +ne L l+ ++ ++   +
   CCD22890.1 10 LKRKIEELKQNNETLGLVVQRTRKSVKR 37
                 9*****************9998766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2367  (0.132021); expected 358.6 (0.02)
Passed bias filter:                      752  (0.0419432); expected 358.6 (0.02)
Passed Vit filter:                       311  (0.0173462); expected 17.9 (0.001)
Passed Fwd filter:                       164  (0.00914719); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.23u 0.38s 00:00:02.61 Elapsed: 00:00:00.63
# Mc/sec: 1996.50
//
Query:       CCD22891.1  [L=792]
Description: hypothetical protein NDAI_0A07370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-06   28.5   2.6    1.2e-06   28.2   0.6    2.2  2  F-box-like  F-box-like
    0.00021   21.1   0.9    0.00021   21.1   0.9    3.1  3  F-box       F-box domain
  ------ inclusion threshold ------
      0.025   14.3   2.7        0.1   12.3   2.7    2.1  1  CdiI        CDI immunity protein


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.6   2.1e-10   1.2e-06       2      47 ..      63     107 ..      62     108 .. 0.95
   2 ?   -2.0   0.1      0.58   3.4e+03       7      17 ..     262     272 ..     262     282 .. 0.78

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2.1e-10
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 + LP  +Ll I++ L++++Ll+l+ V +  +++++++ +L++++vl
  CCD22891.1  63 LKLPKKLLLLILQNLDTRTLLSLCEVNSTLYNIISNN-FLYNHVVL 107
                 68********************************999.******98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.58
  F-box-like   7 EiLlqIFsyLp 17 
                 E++l+I +yLp
  CCD22891.1 262 ELMLDIIDYLP 272
                 89999999996 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.9   3.4e-08   0.00021       2      40 ..      61      99 ..      60     105 .. 0.92
   2 ?   -3.5   0.0       1.8   1.1e+04      29      42 ..     148     161 ..     148     163 .. 0.88
   3 ?   -0.0   0.1      0.15   8.7e+02       9      27 ..     262     280 ..     261     282 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.4e-08
                HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH CS
       F-box  2 tlsrLPsevlrhILerLplsdllalrrVSkgwrilidsd 40
                +l+ LP ++l+ IL++L++++ll+l  V  +++++i + 
  CCD22891.1 61 HLLKLPKKLLLLILQNLDTRTLLSLCEVNSTLYNIISNN 99
                6899*******************************9875 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.8
                 T-HHHHHHHTTHHH CS
       F-box  29 VSkgwrilidsdrl 42 
                 VS ++r l++s+++
  CCD22891.1 148 VSQNVRFLVRSIEF 161
                 8999*****99986 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.15
                 HHHHHHHHTS-HHHHHHHC CS
       F-box   9 evlrhILerLplsdllalr 27 
                 e++++I+ +Lp  + + l+
  CCD22891.1 262 ELMLDIIDYLPNLTHVILS 280
                 899********99998887 PP

>> CdiI  CDI immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   2.7   1.8e-05       0.1      13     109 ..     118     211 ..     113     235 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.8e-05
                 EEEEEEESSSEEE-TTS--EEE-TT--HHHHHHHHHHHHHT--B-SHHHH.HHH-HHHHHHHHHHHHHHHHHHHT-S-HHHHHTT-EEEEEEEETTE CS
        CdiI  13 sissylesrlllldpkqslklLspdvsdselGkairkaLsksreiepedsddifdkekvkerykeeekkimeeygYkskkalfkkmdflsvsllnnk 109
                  i+    +  ++ +++ ++++++ + +d ++ +++r      + ++p+ +d +f+    +++ +++ + i ++y Y s  +l    ++ ++s  nn+
  CCD22891.1 118 AIIHSEFHTSNAINNNSNNNIVNNNKQDDTVSQNVRFLVRSIEFVNPQCQDSLFK---YSKFHNKNDQTIAGSYVYESTSSLSTSSAMKNISNKNNI 211
                 5666666788999***********************988888888*********9...56667777889*************999999999877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       962  (0.0536561); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5828.40
//
Query:       CCD22892.1  [L=191]
Description: hypothetical protein NDAI_0A07380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-24   86.5   9.9    2.3e-24   86.3   9.9    1.0  1  Bac_rhodopsin  Bacteriorhodopsin-like protein
  ------ inclusion threshold ------
       0.12   12.5   2.0       0.16   12.1   0.2    2.0  2  DUF3309        Protein of unknown function (DUF3309)
       0.72   10.4   6.6       0.78   10.3   2.0    2.2  2  DUF5592        Family of unknown function (DUF5592)
        1.6    8.3   7.3       0.26   10.9   0.4    2.1  2  Wzy_C          O-Antigen ligase
        3.5    8.0  11.9       0.74   10.1   1.5    2.6  2  DUF1772        Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> Bac_rhodopsin  Bacteriorhodopsin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   9.9   6.3e-28   2.3e-24       3     145 ..      35     188 ..      34     191 .] 0.93

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 6.3e-28
                    HHHHHHHHHHHHHHHHHHHTTTSSTCCHHHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEETTEE............EEEETHHHHHHHHHHHHHHH CS
  Bac_rhodopsin   3 vfsvfallalvatllfvvtsrrvkdgekrkllvipllitaiaavaYltmalglGltgveaefeh............rqvfyarYidWllttPllvl 86 
                    +++    l+l +++l++v   r k+  +r ++ ++++  a++a+aY+tma+ lG t ++a+ +h            rqvfy r+i+W+l+ P  + 
     CCD22892.1  35 WLWAAFCLFLFSAMLLIVLMFR-KPINERLFYYTAIAPCAFMAIAYFTMASDLGSTPIRAKYDHvktstqkehpgyRQVFYSRFIGWFLALPWPII 129
                    6777777888888888888888.78888**************************************************************999889 PP

                    HHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTH CS
  Bac_rhodopsin  87 vlaelagadrrtllvlvladvvmivgglvgaliestyrwvyftisvaallvvlylllge 145
                      ++ ++    ++++ v+++++++v +l+++l++sty+w+y+ +++aa +vv++ ++++
     CCD22892.1 130 QASLFGKTPLWQIAFNVCMTEFFVVCFLIASLVHSTYKWGYYSFGIAASIVVMISVMTT 188
                    999999999********************************************999865 PP

>> DUF3309  Protein of unknown function (DUF3309)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.66   2.4e+03       4       9 ..      49      54 ..      46      56 .. 0.55
   2 ?   12.1   0.2   4.4e-05      0.16      10      43 ..     155     186 ..     152     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.66
     DUF3309  4 LliiLi 9 
                Lli+L+
  CCD22892.1 49 LLIVLM 54
                555554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.4e-05
     DUF3309  10 llLiGalptwpysrgwGYgPsGglGlvlvilliL 43 
                  +Li++l    y  +wGY+  G+   ++v + ++
  CCD22892.1 155 CFLIASLVHSTY--KWGYYSFGIAASIVVMISVM 186
                 556666666666..9*********9999988766 PP

>> DUF5592  Family of unknown function (DUF5592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.066   2.4e+02      48      74 ..      43      69 ..      36      82 .. 0.78
   2 ?   10.3   2.0   0.00022      0.78      25      64 ..     148     187 ..     139     191 .] 0.81

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.066
     DUF5592 48 yifviilviflviksktNpklrnykal 74
                + f+++l i+l+ +  +N +l  y a+
  CCD22892.1 43 FLFSAMLLIVLMFRKPINERLFYYTAI 69
                567778888888888888888777766 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00022
     DUF5592  25 llvlllltmklsslvhaslvvlfyifviilviflvikskt 64 
                 +  ++++ + + slvh++ ++ +y f i   i+++i   t
  CCD22892.1 148 MTEFFVVCFLIASLVHSTYKWGYYSFGIAASIVVMISVMT 187
                 556889999***************9998888877776555 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   7.4e-05      0.26      21     105 ..      43     126 ..      27     137 .. 0.63
   2 ?    0.8   1.5     0.094   3.4e+02      24      59 ..     154     188 ..     142     191 .] 0.59

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.4e-05
       Wzy_C  21 gllvalivlliifykrripfllllg.ilvgvilliilfv.lstnletlknitkafgkldkkkgkdksgssRlyiwkralplikdspi 105
                  l+ a+++++++f k+   +l++   i+  +  +i++f+  s+   t  + +++++k+   + + +  ++R  +++r + +++  p+
  CCD22892.1  43 FLFSAMLLIVLMFRKPINERLFYYTaIAPCAFMAIAYFTmASDLGSTPIRAKYDHVKT---STQKEHPGYRQVFYSRFIGWFLALPW 126
                 3466777777777777774444444222222222332222344444444555555544...78888889**************9998 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.094
       Wzy_C  24 valivlliifykrripfllllg.ilvgvilliilfvl 59 
                 v ++++ +++   ++   ++++ i++ ++++i +++ 
  CCD22892.1 154 VCFLIASLVHSTYKW--GYYSFgIAASIVVMISVMTT 188
                 334444444444444..55555577777777777765 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.5   0.00021      0.74      59      94 ..      30      65 ..       7     112 .. 0.76
   2 ?    2.4   3.4      0.05   1.8e+02      25      81 ..     137     187 ..     119     191 .] 0.59

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00021
     DUF1772 59 srgarllylaaaallllsivpyTllvmvPtNnkLaa 94
                +rg+ +l++a ++ l+ +++++ l++ +P+N++L+ 
  CCD22892.1 30 ARGSDWLWAAFCLFLFSAMLLIVLMFRKPINERLFY 65
                67888999555555665667788888899**99865 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.05
     DUF1772  25 lkqwrrlfkrg.kavfpplallsalafaylaaraasrgarllylaaaal.lllsivpyT 81 
                  ++w+ +f++  + +f ++ l+++l+          + ++++y  + a+ +++ i ++T
  CCD22892.1 137 TPLWQIAFNVCmTEFFVVCFLIASLVHS--------TYKWGYYSFGIAAsIVVMISVMT 187
                 4689999988866666666666666665........34555554333332444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1573.48
//
Query:       CCD22893.1  [L=493]
Description: hypothetical protein NDAI_0A07390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-09   37.8   2.6    1.4e-09   37.8   2.6    1.9  3  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   2.6   7.9e-14   1.4e-09      23     277 ..     100     370 ..      71     373 .. 0.65
   2 ?   -3.4   0.1      0.28   4.9e+03      73      88 ..     404     429 ..     401     461 .. 0.61
   3 ?   -2.8   0.2      0.19   3.4e+03     262     279 ..     465     482 ..     438     483 .. 0.73

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 7.9e-14
                 HHHHHHHHHHHT-SEEEEEEE.C....TGGTTSSTTT...........GCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTTTHHHHHHHH CS
   Cellulase  23 tkalidevkdagfntvRlpvs.w....gelvenapdy...........kvdenslerveevvkyakenglyvildiHseegwltkadgnssedtaeeff 105
                   + +++  +ag++++R+p++ w    g  +     +             ++++ e+++e++k ake+ + +++d+H  +g +++++ ++ + +   ff
  CCD22893.1 100 RIDWKWLNESAGVTALRVPIGfWhvgnG-KF-----LnglpfeslkevYEKAKAWEKLKELIKKAKEHHIGILIDMHGLPGGANPDSHSGGSIEKGGFF 192
                 55666677889**********6444431.22.....1223334444335666999***********************955555555555555555555 PP

                 HH..........HHHHHHHH.HTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHHCTSGSSSSTT CS
   Cellulase 106 kk..........lwtqiAer.ykkndevvifelmNEPhgnntgaewtseeadevkayaeeaikaIRavgpnrliivegnswsgnldgavlndPndsqdn 193
                 k+          +   i +   ++nd+v++  ++NE   +n+         +e k+y+++aikaI ++++n  ii+    w ++     ++     +  
  CCD22893.1 193 KNkkyvdkmcyeVFPFIVNDiCTSNDNVIGLQIVNEAAFSNEA--------KEEKDYHKKAIKAISEIDSNLPIIISDGWWPQQWVDWLKEQK--LNAT 281
                 55555555666656666655156888899**********6655........666*****************9999988888888777555554..4689 PP

                 EEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHH..HHHHHHHTTSEEEEEEEESSTTSSH..HHHHHHHHH........HHHHHHT.TTEEEEEEE CS
   Cellulase 194 liysvHfYgpsdfaqtefgkdltdktnlaqrled..aakylvekgipviigEfGgsnadgd..lakeeaekw........ldylkek.giswiyWsl 277
                 ++++ H Y      ++ +      ++  +q  +d  ++ ++ ++ +  ++gEf  + a++    ++  +e +         +++ +k ++++++W+l
  CCD22893.1 282 VVIDAHVYRCFS--DDDK------NKQAQQICNDlpVTINFPTEEADFMVGEFSCNLAEEAwdKTSGNREDYlrklgqvqTSVFHQKaSFGYFFWTL 370
                 ********9333..2222......2334555554113455567777777777777644444442222233332223443333334444777777765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.28
                 HTT-EEEEEEESS..........TTT CS
   Cellulase  73 englyvildiHse..........egw 88 
                 e+++++++  H +          e w
  CCD22893.1 404 EKDIKAVVSQHVDywkskggdkfEHW 429
                 67888888888875555555444444 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.19
                 HHHHHHTTTEEEEEEESS CS
   Cellulase 262 ldylkekgiswiyWslnp 279
                  +yl +kg s  +W +++
  CCD22893.1 465 KEYLSQKGDSEYMWEWDQ 482
                 589999********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4019.55
//
Query:       CCD22894.1  [L=301]
Description: hypothetical protein NDAI_0A07400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0024   17.8   7.2     0.0024   17.8   7.2    2.2  2  Wtap           WTAP/Mum2p family
  ------ inclusion threshold ------
      0.018   15.3   3.1      0.099   13.0   3.1    2.2  1  Lzipper-MIP1   Leucine-zipper of ternary complex factor MIP1
      0.028   14.6   7.7      0.063   13.4   0.5    2.5  2  XLF            XLF-Cernunnos, XRcc4-like factor, NHEJ compone
      0.031   13.9   0.7      0.063   12.9   0.7    1.4  1  Stk19          Serine-threonine protein kinase 19
       0.14   12.6   5.9          4    7.9   0.8    2.6  2  DUF3837        Domain of unknown function (DUF3837)
        0.2   11.8   9.5       0.52   10.5   9.5    1.8  1  Tropomyosin_1  Tropomyosin like
       0.96    9.5  11.0       0.11   12.5   5.1    2.2  3  SPATA1_C       Spermatogenesis-associated C-terminus
        1.2    9.3   9.8       0.12   12.6   4.7    2.0  2  Med30          Mediator complex subunit 30


Domain annotation for each model (and alignments):
>> Wtap  WTAP/Mum2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.7      0.17   3.9e+02     111     141 ..     139     169 ..      61     184 .. 0.70
   2 !   17.8   7.2   1.1e-06    0.0024       8     134 ..     144     298 ..     137     301 .] 0.75

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.17
        Wtap 111 egrvakLeselalqkkfveelkkaleeleel 141
                 + ++++L+++l+ ++ +v +l  + + l+ l
  CCD22894.1 139 QKSLESLKEKLSIKDIQVGKLDDEIQHLKSL 169
                 3444555555555555555555555554444 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.1e-06
        Wtap   8 lllarlsakeqelqelksslqelkqslqp...psssqlrqvllDPA...vnlvfsrlrkeleeaenkleeaqeeLqalkftpds............... 85 
                  l ++ls k+ ++ +l +++q+lk+ l       + + ++  +D +     ++  +l k+++e  +k+  +  eL++l+   +                
  CCD22894.1 144 SLKEKLSIKDIQVGKLDDEIQHLKSLLGHtitY-NDKINESCTDDSssgDTFISANLEKKTKELVEKICIKDRELKELNDKYEElylkvtmstssnsit 241
                 567788999999999999999999987775431.33444444444424223455678888888888888888888888877774555555556667777 PP

        Wtap  86 ........qtGkrLmakcrvLeqENeELgkvleegrvakLeselalqkkfveelkka 134
                         ++  +++ ++ +L +EN++++++l+ gr +++  el l++  ++el+++
  CCD22894.1 242 kngrydveTMMHKMIIRFETLSKENDDMARMLSYGRSKEIDVELLLLDMENAELREK 298
                 77777777*************************************999999999875 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   3.1   4.4e-05     0.099       8      81 ..     158     231 ..     128     233 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.4e-05
  Lzipper-MIP1   8 sLeqeveqLqerLqeeeklrraLekal.ssssdgsllslstllpkkakellkeiallEeevvkLEqkllsLyrkl 81 
                   +L  e+++L+  L +  + +    + + + ss+g    +s+ l kk+kel + i +   e  +L  k ++Ly+k+
    CCD22894.1 158 KLDDEIQHLKSLLGHTITYNDKINESCtDDSSSG-DTFISANLEKKTKELVEKICIKDRELKELNDKYEELYLKV 231
                   6899*******************99996334434.4466777******************************996 PP

>> XLF  XLF-Cernunnos, XRcc4-like factor, NHEJ component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.6     0.021        47     139     171 ..     134     166 ..     130     174 .. 0.87
   2 ?   13.4   0.5   2.8e-05     0.063     140     171 ..     196     227 ..     193     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.021
         XLF 139 asaelkrqveeLieilkeKDavIskLldkless 171
                 +s e +++ e+L e l  KD   +kL d+++ +
  CCD22894.1 134 SSLEEQKSLESLKEKLSIKDIQVGKLDDEIQHL 166
                 57789999********************99976 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.8e-05
         XLF 140 saelkrqveeLieilkeKDavIskLldkless 171
                 sa+l+++++eL+e +  KD++++ L+dk+e++
  CCD22894.1 196 SANLEKKTKELVEKICIKDRELKELNDKYEEL 227
                 6889*************************985 PP

>> Stk19  Serine-threonine protein kinase 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.7   2.8e-05     0.063      50     133 ..     139     220 ..     128     224 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.8e-05
       Stk19  50 ereleelirkgklrklvingrgkdisklgevlvltedyeklikesseleeeekvlekFlellkenptalsisasslseeeisaL 133
                 +++le+l++k  ++ +++ + +++i++l+++l +t +y+++i+es + ++++   + F++   e++t+  +++  ++++e+++L
  CCD22894.1 139 QKSLESLKEKLSIKDIQVGKLDDEIQHLKSLLGHTITYNDKINESCTDDSSSG--DTFISANLEKKTKELVEKICIKDRELKEL 220
                 689***************************************88888888877..*************9998889999999887 PP

>> DUF3837  Domain of unknown function (DUF3837)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.4    0.0039       8.8      42      88 ..     135     182 ..     129     192 .. 0.82
   2 ?    7.9   0.8    0.0018         4      67     100 ..     246     279 ..     209     280 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0039
     DUF3837  42 eieekeeleelkekleeelkkvspkdekekklikllkd.Yepdeevde 88 
                  +ee+++le+lkekl+ +  +v + d+++++l++ll +    +++ +e
  CCD22894.1 135 SLEEQKSLESLKEKLSIKDIQVGKLDDEIQHLKSLLGHtITYNDKINE 182
                 46899*******************************864445555555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0018
     DUF3837  67 dekekklikllkdYepdeevdeqmkellklGyee 100
                  + e+ ++k++ ++e   + +++m  +l++G+ +
  CCD22894.1 246 YDVETMMHKMIIRFETLSKENDDMARMLSYGRSK 279
                 3578999************************876 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   9.5   0.00023      0.52      16     131 ..     121     252 ..     115     264 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00023
  Tropomyosin_1  16 aeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktn.ne...............altrkiqlLEeeleesdkk 95 
                     ++  ++  ++ +++le+ + ++sL++k++  + +v kl+++++  k+ + ++ + + + ne               +l++k + L e +   d++
     CCD22894.1 121 TKQFDKDPSNQRNSSLEEQKSLESLKEKLSIKDIQVGKLDDEIQHLKSLLGHTITYNDKiNEsctddsssgdtfisaNLEKKTKELVEKICIKDRE 216
                    555555555666677788889**************************999877655444144788889999************************* PP

  Tropomyosin_1  96 LkettekLretdvkaeelERkvkaLeqerdewekky 131
                    Lke ++k +e  +k   +        + r + e+ +
     CCD22894.1 217 LKELNDKYEELYLKVTMSTSSNSITKNGRYDVETMM 252
                    ********9998887666555555555555555555 PP

>> SPATA1_C  Spermatogenesis-associated C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.6   8.1e+03     103     114 ..      63      72 ..      38      83 .. 0.53
   2 ?    1.7   0.5      0.11   2.4e+02     105     122 ..     134     151 ..      97     180 .. 0.52
   3 ?   12.5   5.1     5e-05      0.11       7     116 ..     136     295 ..     130     300 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.6
    SPATA1_C 103 iiqiiaaqheid 114
                      ++qh+ +
  CCD22894.1  63 HL--QQQQHQFN 72 
                 22..22333333 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.11
    SPATA1_C 105 qiiaaqheidelkrkled 122
                 +  ++q+ ++ lk+kl  
  CCD22894.1 134 SSLEEQKSLESLKEKLSI 151
                 222233333333333221 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 5e-05
    SPATA1_C   7 keerkelEerr..................................................eellrkakelleqnkqkree.nqakeiWkkkyleeKks 54 
                 +ee+k lE  +                                                   +l +k+kel+e+   k  e +++ +  +  yl+   s
  CCD22894.1 136 LEEQKSLESLKeklsikdiqvgklddeiqhlksllghtityndkinesctddsssgdtfisANLEKKTKELVEKICIKDRElKELNDKYEELYLKVTMS 234
                 56666666666778888888888888888888888888888888888888888888888888999*********77776677************99977 PP

    SPATA1_C  55 TasLeeelkkLrqelellykkllaqlkardnkkkeknvakseelkneliiqiiaaqheidel 116
                 T+s +   k+ r ++e++ +k+++  ++  + + + +++ s     e  +++  +  e  el
  CCD22894.1 235 TSS-NSITKNGRYDVETMMHKMIIRFETLSKENDDMARMLSYGRSKEIDVELLLLDMENAEL 295
                 776.6788899*************99985443333333333323333334444444444455 PP

>> Med30  Mediator complex subunit 30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       2.4   5.3e+03      34      45 ..      60      71 ..      40      81 .. 0.56
   2 ?   12.6   4.7   5.2e-05      0.12      39     134 ..     125     224 ..     111     233 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.4
       Med30 34 ngrtqskhqaqd 45
                n++  +++q+q 
  CCD22894.1 60 NNTHLQQQQHQF 71
                333333333332 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 5.2e-05
       Med30  39 skhqaqdrkkklqeqlrqlkvlfkkLrliYekckencqgleevpiesL....ipyvdeekskreerkksee...vkqlkeerkelleklkeknkqLkei 130
                  k  +++r+  l+e  + l++l++kL +  ++++    + e  +++sL    i y d++++   + ++s +   + +l+++ kel+ek++ k+++Lke+
  CCD22894.1 125 DKDPSNQRNSSLEE-QKSLESLKEKLSI--KDIQVGKLDDEIQHLKSLlghtITYNDKINESCTDDSSSGDtfiSANLEKKTKELVEKICIKDRELKEL 220
                 45555566666655.5899999999988..55555555555445555534449999999555555554444222457788899**************** PP

       Med30 131 mdql 134
                  d+ 
  CCD22894.1 221 NDKY 224
                 9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1582  (0.0882369); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2402.79
//
Query:       CCD22895.1  [L=810]
Description: hypothetical protein NDAI_0A07410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-42  145.0   0.4    5.2e-42  144.1   0.4    1.4  1  UCH         Ubiquitin carboxyl-terminal hydrolase
    1.9e-19   69.7   5.4    1.9e-19   69.7   5.4    2.9  2  zf-UBP      Zn-finger in ubiquitin-hydrolases and other prote
    1.2e-17   64.5   0.8    1.2e-17   64.5   0.8    2.9  3  UCH_1       Ubiquitin carboxyl-terminal hydrolase
    6.3e-12   45.1  10.3    1.1e-11   44.2   3.2    2.8  2  zf-UBP_var  Variant UBP zinc finger
    6.2e-10   38.8   0.0    1.6e-07   31.1   0.0    2.6  2  UBA         UBA/TS-N domain


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   0.4   1.4e-45   5.2e-42       1     257 []     342     805 ..     342     805 .. 0.86

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 1.4e-45
                 -EES-SSSTHHHHHHHHHHHT..SHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH...SH-CCEE--HHHHHHHHHHSGGGTS CS
                 xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   1 tGlsNlGntCymnsvlQcLfs..ipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell...kskskavsPkklkktlsklaksfsg 94 
                 +Gl+NlGn+Cy+nsv+QcL++  +p+++d l ++     ++  k+ +         g+l +++ +l++++    ++ ++ + P+++k++++k + +f++
  CCD22895.1 342 CGLINLGNSCYLNSVMQCLLNggVPNWSDKLGNI---IGHDFPKDVI------YPTGNLRCQMIKLLNAFKlnpEDYEEGIRPRSFKECVGKHNAEFKT 431
                 7*******************98899999888885...3334444333......33456*********999999988999******************** PP

                 SSTCEHHHHHHHHHHHHHHHHCC...........................................HCCCHHHHHHCCCTTSHHHHHH-EEEEE..... CS
                 xxxxxxxxxxxxxxxxxxxxxxx...........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
         UCH  95 ykqqDaqEflaflLdqlhedlnr...........................................evaeekwkkhlkrndslitdlfegqlks..... 145
                 ++qqD+ Efl+f+ ++l++ l                                             +  ++    ++++  +litd f+g+  +     
  CCD22895.1 432 NNQQDSMEFLTFVTEELEKGLFPkiqdasinpnnllkfimedklqcvecknvkytyqpneciqlplKEGNDLVGTTTQNLMELITDYFQGEEIEfscpt 530
                 *********************9988888888888888888888888888888888888888888554344444777777778888888888887***** PP

                 .........EEEEEEB-SEEEEEEESEEETEE.EEE--SEEB--S.......EEE-GGGBSS-BTTS-TCS-B.......................... CS
                 .........xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxx.......................... RF
         UCH 146 .........klklkrlPeiLiihlkRfsynss.ksKlntkvefpe.......eldlssylaeekkkkteekkk.......................... 201
                          k ++k++P++Lii+  R++ +++ + K ++++ +p+        ld++++++++ + + e   +                          
  CCD22895.1 531 ckrmtkavkKQSFKTFPNTLIINPLRIKLDKWvPVKTSDSLVIPDlddanceFLDIANFQSKGFDAEIE---Ilfpetdqgtqfvpdensmaqlqemgf 626
                 ********************************************7666666688888766666655544...133467777777777777777888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
         UCH 202 ................................................................................................... 201
                                                                                                                    
  CCD22895.1 627 tpnaikrslyetgnkdtevamnwlfqhiddpdlnsefvapstsksktaevdqsslqtmlamgldaklsrkaltiysgdvaastewvfnnldddgelesv 725
                 8888888888888888888888999999999999999999999999999999*********************************************** PP

                 .....................EEEEEEEEEES.CTTSEEEEEEEE..CTTTTEEEEEETTEEEEE-HHCCCTTCEEEEEE CS
                 .....................xxxxxxxxxxx.xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 202 .....................YeLiavvvHsG.slssGHYvayik..nekngkWykydDetvkevkeeeevlssayiLfY 257
                                      Y+L+av++H+G s++sGHYva+i+   +++ kW+ y+De++  +++ +e++ ++yi++Y
  CCD22895.1 726 heeveerteggsepgnldnkpYKLTAVICHKGtSVHSGHYVAFIRklIDNERKWVLYNDEKIVISENMDEIKRNGYIYIY 805
                 ******************************************99944345667************99999999*****99 PP

>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   5.7     0.046   1.6e+02       8      33 ..      38      73 ..      21      81 .. 0.63
   2 !   69.7   5.4   5.3e-23   1.9e-19       1      60 [.     209     278 ..     209     282 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.046
                .SSEEEETTT--EEE-TTT.........T.-HHHHH CS
      zf-UBP  8 nknlWlCLkCghvgCgrks.........n.ghalkH 33
                +++l +CL+C + +C +           n + ++kH
  CCD22895.1 38 RHSLNICLSCFQAVCKKHTglhhkvteqNcEFSHKH 73
                56789***********74433322222223333333 PP

  == domain 2  score: 69.7 bits;  conditional E-value: 5.3e-23
                 -TTTH--.SSEEEETTT--EEE-TTT.....T-HHHHHHH.HH---EEEETTT--.....EEETTTTEEBE CS
      zf-UBP   1 CseCnsenknlWlCLkCghvgCgrks.....nghalkHye.etrHplavdlstls.....vycyscddeve 60 
                 C++C+   +nlWlCL+Cg+vgCgr++     ++hal+H++ +++H la++l++ls     +ycyscddev+
  CCD22895.1 209 CHDCDLP-SNLWLCLHCGNVGCGRNQvgidgHSHALAHFNtNKEHSLAIKLGSLStlsndLYCYSCDDEVK 278
                 *****98.9*********************99*******95666*************************97 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.13   4.5e+02     207     252 ..     151     301 ..      55     322 .. 0.60
   2 ?   -0.9   1.3      0.27   9.6e+02       2      19 ..     343     360 ..     342     361 .. 0.87
   3 !   64.5   0.8   3.3e-21   1.2e-17      60     319 ..     391     786 ..     384     787 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.13
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.................................................................... RF
       UCH_1 207 eqrktvknlPpvLalnakle.eeeelelwkt.................................................................... 236
                 e  +  +++P+++ +  k+  +e+  + w+                                                                     
  CCD22895.1 151 EGDNINEKIPQIINAKSKVLvDEK--QAWELqmkscqhthnleatastisipesslnlekchdcdlpsnlwlclhcgnvgcgrnqvgidghshalahfn 247
                 444444455555555555553332..4444444455555555555555555555555555555555555555566666666666666666666666666 PP

                 ......................................xxxxxxxxxxxxxxxx RF
       UCH_1 237 ......................................knwlpleiklsldedk 252
                                                       +n+l++++k++++++ 
  CCD22895.1 248 tnkehslaiklgslstlsndlycyscddevkfgtpeflSNYLSKNFKININSNA 301
                 666666666666666666666666666666666666666666666666666554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.27
                 xxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvl 19 
                 GL n  + +YlNs++Q+l
  CCD22895.1 343 GLINLGNSCYLNSVMQCL 360
                 77788899********87 PP

  == domain 3  score: 64.5 bits;  conditional E-value: 3.3e-21
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  60 lncqasnFlralssipeasalglileee.eetekssaislssliqs....fnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseks 153
                 l cq   +l+a++ +pe  + g+   ++ +e   + ++++++  q+    f +f++++lek l ++ +    ++ + ++ll++ +e++++c +C++ k 
  CCD22895.1 391 LRCQMIKLLNAFKLNPEDYEEGIR-PRSfKECVGKHNAEFKTNNQQdsmeFLTFVTEELEKGLFPKIQ---DASINPNNLLKFIMEDKLQCVECKNVKY 485
                 48999999*****99*99999995.4443544444444444444423366************999775...56666889******************97 PP

                 xxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx............. RF
       UCH_1 154 rksstlvldlkyP.kpsne.kkeakvtfasilksslerekttrawCekCkryqpteqrktvknlPpvLalnakle.eeeelelwkt............. 236
                   +    ++l  P k+ n+   ++++++ +++   ++  ++++  C++Ckr +   +++++k +P+ L++n  +   ++    w               
  CCD22895.1 486 TYQPNECIQL--PlKEGNDlVGTTTQNLMELITDYFQG-EEIEFSCPTCKRMTKAVKKQSFKTFPNTLIINPLRIkLDK----WVPvktsdslvipdld 577
                 7777777667..65533334444457788888888888.7889****************************98873444....65566699999999** PP

                 ................................................................................................... RF
       UCH_1 237 ................................................................................................... 236
                                                                                                                    
  CCD22895.1 578 dancefldianfqskgfdaeieilfpetdqgtqfvpdensmaqlqemgftpnaikrslyetgnkdtevamnwlfqhiddpdlnsefvapstsksktaev 676
                 *************************************************99999999999999999999999999999999999999999999999999 PP

                 .....xxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 237 .....knwlpleiklsldedknl................................eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkv 298
                      +    + +++ ld + ++                                e ++++e  ++  + + k Y+L++v++h g+s +sgh+v++++ 
  CCD22895.1 677 dqsslQ----TMLAMGLDAKLSRkaltiysgdvaastewvfnnldddgelesvheEVEERTEGGSEPGNLDNKPYKLTAVICHKGTSVHSGHYVAFIR- 770
                 855543....4444444433333555688999999999999999999999998764444444444556677899*************99*********. PP

                 xxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 299 aekelerdppesqWylFNDfl 319
                   k+    ++e +W+l ND +
  CCD22895.1 771 --KLI---DNERKWVLYNDEK 786
                 ..443...3677*******66 PP

>> zf-UBP_var  Variant UBP zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   3.2   3.2e-15   1.1e-11       8      53 ..      14      66 ..      10      83 .. 0.78
   2 ?    3.9   0.6     0.012        44      21      56 ..     211     256 ..     209     261 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 3.2e-15
  zf-UBP_var  8 dkVyKdECvycFdt.......pesedGlyvcLkcFlgfckkhaekhaektghp 53
                +++ KdEC+ycF++        e+ ++l +cL+cF+++ckkh+ +h+++t++ 
  CCD22895.1 14 TVIAKDECIYCFESlynnnpeKETRHSLNICLSCFQAVCKKHTGLHHKVTEQN 66
                6899********86333332245678**********************99764 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.012
  zf-UBP_var  21 tpesedGlyvcLkcFlgfck.........khaekhaekt.ghpvyl 56 
                 +++ ++ l  cL+c + +c          +ha +h++++ +h++++
  CCD22895.1 211 DCDLPSNLWLCLHCGNVGCGrnqvgidghSHALAHFNTNkEHSLAI 256
                 677788899*******999999999999999999999885676665 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   4.5e-11   1.6e-07       2      37 .]     614     650 ..     613     650 .. 0.95
   2 !    5.2   0.0    0.0057        21       2      36 ..     677     711 ..     676     712 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 4.5e-11
                 CHHHHHHHHHTTS-HHHHHHHHHHTTT.SHHHHHHHH CS
         UBA   2 deeaiqrLveMGFdreevveALratgn.NeErAveyL 37 
                 de + ++L+eMGF++++++++L+ tgn + E A+++L
  CCD22895.1 614 DENSMAQLQEMGFTPNAIKRSLYETGNkDTEVAMNWL 650
                 677889******************************9 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0057
                 CHHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHH CS
         UBA   2 deeaiqrLveMGFdreevveALratgnNeErAvey 36 
                 d++++q++++MG d    ++AL    +++ + +e+
  CCD22895.1 677 DQSSLQTMLAMGLDAKLSRKALTIYSGDVAASTEW 711
                 89**********77777777776666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5564.37
//
Query:       CCD22896.1  [L=87]
Description: hypothetical protein NDAI_0A07420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 665.62
//
Query:       CCD22897.1  [L=733]
Description: hypothetical protein NDAI_0A07430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.8e-106  354.7   0.3   6.6e-106  354.0   0.3    1.4  1  ORC2         Origin recognition complex subunit 2
  ------ inclusion threshold ------
      0.022   14.6  18.6       0.66   10.0   4.3    3.4  2  AT_hook      AT hook motif


Domain annotation for each model (and alignments):
>> ORC2  Origin recognition complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.0   0.3  7.4e-110  6.6e-106       1     331 [.     358     719 ..     358     720 .. 0.96

  Alignments for each domain:
  == domain 1  score: 354.0 bits;  conditional E-value: 7.4e-110
                 XXXXXXXXX-TTTHHHHHHHHHH.HHHSHHHHHHHHHHHGGGHHHHHHHHHTT-EEEE--SS--HHHHHHHHSSS----.................... CS
        ORC2   1 SnntlsslplLdeeeyerllekl.kdthekekekLeklhkklfpqwlfeLeqGFslllyGvGSKrklleeFaeellskr.................... 78 
                 S++t++ +p +++ee++ +++ + k+  +k +ekL+ l++k+fpq++feL+qGF+ll+yG+GSK++lleeF  ++ls++                    
  CCD22897.1 358 STSTMALAPDVTREEFALVTNIFnKEYLKKPREKLHLLQRKMFPQYWFELSQGFTLLFYGIGSKKSLLEEFSLKYLSPKlayvreannqkneslslsdi 456
                 7899999*********99999998888999***********************************************99******************** PP

                 .....SSS-EEEE----TT--SHHHHHHHHHTT--S.--....-SSS--HHHHHHHHHHHHHS--S-..S--EEEES-SSSTTTTSHHHHHHHHTTTT- CS
        ORC2  79 .....kdgpvvvvnGylpsltlkdilseiasallekkea....kklsssvaaqlekilslleekeseeksklylvihniDgpsLrkekaqalLarLaai 168
                      + +p+vv+nGy+p++++++++s+i+s l++++ +    k +++ v  q++k+ +++++++++  +kl++v+hn+Dgp Lrk+++q++L++La i
  CCD22897.1 457 ikpptDGIPCVVINGYNPTINYREVFSDISSILYPADLTrndlKFWGNLVILQIQKMNEFYKTQPPD--IKLIIVVHNLDGPVLRKAAFQTMLSSLAMI 553
                 *****9*************************999988778999*********************999..7***************************** PP

                 SSSEEEEE--STTHHHH--HHHHTTS-EEE---------GGGGGG--.-TT---.--.----HHHHHHHHHHS-HHHHHHHHHHHHHHHT-......-- CS
        ORC2 169 pqIhliasiDhinapllwdssklsqfnfvfhdvtTfapysaElsfedevlellgrskrrvggkegakfVLkSLtenarklfklLveeqLek......ke 261
                 +qI+++as+Dhi+apllwd+++++++nf+fhdvt ++  ++E+sf d v++l++  k+ ++g eg+k+VL+SLt n++k++klL+e+++++      ++
  CCD22897.1 554 RQIAIVASVDHIYAPLLWDNTRAQNYNFIFHDVTDYRANEIESSFYD-VMNLGR--KEASTGVEGVKYVLQSLTLNSKKMYKLLLEKMIDNmeteakNN 649
                 ***********************************************.999999..45899*****************************666656577 PP

                 -----------------BHHHHHHHHHHS--SSSGGGHHHHHHHHTTTTSS-B--------BB--S--HH CS
        ORC2 262 seekkekskkgseeagveykelynkareefivssemalrtlLkEFkDHklikskkdasgtevlsiplrke 331
                 ++ k ++ ++g  e+++e+ke+++ ++e+fi+s+e++lr++L+E+++Hk++ ++kd++g+e+l++p++++
  CCD22897.1 650 KQIKVRGMRRGCLEVAIEFKEFVTSCTERFIASNEISLRSMLVEYVEHKMALLQKDKNGSEYLWVPFNYS 719
                 777888899999*******************************************************987 PP

>> AT_hook  AT hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.3   7.4e-05      0.66       1      11 [.      89      99 ..      89     101 .. 0.85
   2 ?    8.7   6.3    0.0002       1.8       1      12 [.     110     121 ..     110     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 7.4e-05
     AT_hook  1 kRkRGRPrKaa 11
                ++kRGRPrK +
  CCD22897.1 89 PKKRGRPRKEP 99
                79*******76 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0002
     AT_hook   1 kRkRGRPrKaat 12 
                 ++kRGRPrK ++
  CCD22897.1 110 PKKRGRPRKIHK 121
                 79*******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1995  (0.111272); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.46
# Mc/sec: 4808.25
//
Query:       CCD22898.1  [L=309]
Description: hypothetical protein NDAI_0A07440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-66  224.0   0.1    1.9e-66  223.6   0.1    1.2  1  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
      0.067   13.0   0.0      0.099   12.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
        0.1   12.2   0.1       0.23   11.0   0.1    1.7  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F


Domain annotation for each model (and alignments):
>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.6   0.1   3.1e-70   1.9e-66       1     177 []      21     207 ..      21     207 .. 0.96

  Alignments for each domain:
  == domain 1  score: 223.6 bits;  conditional E-value: 3.1e-70
                 CCCCHHHHHHHHHHHHT-S-..TT-EEEECT-TTSHHHHHHCCT.........T.-SEEEEEESSSSHHHTTEEEECS-CCCSSHHHHHCHCHHHSSEE CS
        FtsJ   1 yrsRsayKLleidekfklfk..pgktvvDlgaaPGgwsqvllqrl........gakgkvvavDlqpmaplpgvttiqgditdpetiekikealserkvd 89 
                 yr+Rsa+KLl+++++f++++  + k+vvDl+aaPG+wsqvl+++l        +++ k+vavDlqpm+p+++v t+q+dit+p+t ++i+e ++++k+d
  CCD22898.1  21 YRARSAFKLLQLNDQFHFLDdtNLKRVVDLCAAPGSWSQVLSKKLfndttleqQNERKIVAVDLQPMSPIDHVVTLQADITHPKTLKRILEIFGNEKAD 119
                 9****************886679999*******************88888765336******************************************* PP

                 EEEE--S-SS-CHHHHHHHHHCCCCHHHHCCHCCCCECCCEEEECCCHCCCHHHHHHHHHCCEEEEEEEE-SS--CCG-EEEEEEEEC CS
        FtsJ  90 lvvsDgapdvsgvhdldeylqsqLllaalelalkllkpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvcrgf 177
                 +v+sDgapdv+g hdldey+q qL+++al+l++ +lk+ggtfv+kifrg++++ l++ql  +Fe+v ++kPkssr +s e+f+vc+g+
  CCD22898.1 120 FVCSDGAPDVTGLHDLDEYVQQQLIMSALQLTTCILKEGGTFVAKIFRGRDIDMLYSQLGYLFENVVCAKPKSSRGTSLEAFIVCLGY 207
                 *************************************************************************************986 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.7e-05     0.099      20      88 ..      41     123 ..      17     191 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.7e-05
  Methyltransf_23  20 lraggrvLdiGcGtGillevlre...........ngfsvtgvDlspeaveiae...........kakkaqkdqfdeqeaaepqgkfdlIvl 88 
                      +   +rv+d+ ++ G++++vl++           n  ++++vDl p+ ++i             k          ++ + + ++k d++++
       CCD22898.1  41 DTNLKRVVDLCAAPGSWSQVLSKklfndttleqqNERKIVAVDLQPM-SPIDHvvtlqadithpK-------TLKRILEIFGNEKADFVCS 123
                      56789****************88555555555422338888888774.44432555533333331.......2222233334445555543 PP

>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.9e-05      0.23       4      72 ..      39     104 ..      36     163 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.9e-05
                      H---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHT.T--SEEEEES-CTCCH CS
  Methyltr_RsmB-F   4 LapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrL.gvtntivleaDarkid 72 
                      L+  + ++++DlcaaPG+    +++ + n  t   +++++eR k va +l+ + ++ ++  l+aD+++++
       CCD22898.1  39 LDDTNLKRVVDLCAAPGSWSQVLSKKLFNDTT---LEQQNER-KIVAVDLQPMsPIDHVVTLQADITHPK 104
                      77788899**********99888765444443...4555555.455555555523556666677776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2375.84
//
Query:       CCD22899.1  [L=173]
Description: hypothetical protein NDAI_0A07450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-11   43.7   7.5    4.8e-11   42.8   7.5    1.5  1  zf-RING_2     Ring finger domain
    2.5e-08   34.1   8.0    1.2e-07   31.9   8.0    2.1  1  zf-rbx1       RING-H2 zinc finger domain
    8.2e-06   25.6   7.9    1.8e-05   24.5   7.9    1.6  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      2e-05   24.5   2.6    2.5e-05   24.2   1.8    1.6  2  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
    2.6e-05   24.0   6.7    2.6e-05   24.0   6.7    1.7  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    8.3e-05   22.5   2.8    8.3e-05   22.5   2.8    1.9  2  zf-RING_UBOX  RING-type zinc-finger
     0.0002   21.0   5.8    0.00048   19.8   5.8    1.7  1  zf-RING_11    RING-like zinc finger
    0.00043   20.1   5.1     0.0014   18.5   5.2    1.8  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    0.00058   20.0   8.1     0.0014   18.8   5.4    2.6  2  FANCL_C       FANCL C-terminal domain
      0.006   16.5   5.0      0.006   16.5   5.0    1.7  2  zf-RING_5     zinc-RING finger domain
  ------ inclusion threshold ------
      0.066   13.1   7.3       0.24   11.3   7.4    1.9  2  Prok-RING_4   Prokaryotic RING finger family 4
       0.25   11.5   7.9       0.95    9.7   8.0    2.0  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
       0.26   11.0   6.6       0.87    9.3   6.6    1.9  1  zf-P11        P-11 zinc finger


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   7.5   3.5e-14   4.8e-11       2      44 .]     103     148 ..     102     148 .. 0.82

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 3.5e-14
   zf-RING_2   2 eCpICleel.ssadsvl.ll.pCgHvfhreClerwlrssstCPlCr 44 
                 eC+IC++++ ++++ ++  l +CgH f+ eC++ wl +s tCPlCr
  CCD22899.1 103 ECAICFCKFlEDKYPLVaELpHCGHRFDLECISVWLSKSDTCPLCR 148
                 8*******94444444444445***********************9 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   8.0   8.4e-11   1.2e-07      16      55 .]     108     148 ..      76     148 .. 0.78

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 8.4e-11
     zf-rbx1  16 eckapgdee.cpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                  ck+ +d+   +  l +CgH F l+Cis Wl+++++CPlcr
  CCD22899.1 108 FCKFLEDKYpLVAELPHCGHRFDLECISVWLSKSDTCPLCR 148
                 35555555355556789***********************8 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   7.9   1.3e-08   1.8e-05       1      40 []     103     147 ..     103     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.3e-08
  zf-C3HC4_2   1 kCpiCl.dmlkd..psvvt..pCgHvfCqkCilrsLeekneCPlC 40 
                 +C+iC+  +l+d  p+v     CgH+f  +Ci  +L++++ CPlC
  CCD22899.1 103 ECAICFcKFLEDkyPLVAElpHCGHRFDLECISVWLSKSDTCPLC 147
                 6****83456663254444889*********************** PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.5   6.2e+03      62      73 ..      67      78 ..      46      86 .. 0.71
   2 !   24.2   1.8   1.8e-08   2.5e-05      36      81 ..     107     151 ..      91     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.5
                HHHHHHHSTSSB CS
  zf-ANAPC11 62 lkwletetskgl 73
                ++w+e+  sk++
  CCD22899.1 67 QEWFEQIDSKNR 78
                568877777654 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 1.8e-08
                 TTCSTTTTTS-EEEBT..TS-EEEHHHHHHHHHHHSTSSB-TTTSSB- CS
  zf-ANAPC11  36 psckfpGddcplvlGk..ckhnfhlhcilkwletetskglcpmcrqtf 81 
                   ckf  d+ plv     c h f l ci  wl+++   + cp+cr+++
  CCD22899.1 107 CFCKFLEDKYPLVAELphCGHRFDLECISVWLSKS---DTCPLCRDSV 151
                 469**********76444**************876...57*****875 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         4   5.5e+03      33      39 ..      76      82 ..      68      87 .. 0.59
   2 !   24.0   6.7   1.9e-08   2.6e-05       1      41 []     104     147 ..     104     147 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4
                TSSB--T CS
    zf-C3HC4 33 rkkvkCP 39
                ++ ++C 
  CCD22899.1 76 KNRKSCS 82
                3444464 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 1.9e-08
                 -TTT-S--SS-E......E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn.....elleCkHsfCskCirkilksrkkvkCPlC 41 
                 C+iC++++ e +     el  C+H+f  +Ci+ +l+  k+ +CPlC
  CCD22899.1 104 CAICFCKFLEDKyplvaELPHCGHRFDLECISVWLS--KSDTCPLC 147
                 ********99999***********************..9999**** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   2.8     6e-08   8.3e-05       1      39 []     104     145 ..     104     145 .. 0.83
   2 ?   -0.1   0.2       0.7   9.7e+02       1       7 [.     144     150 ..     144     155 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 6e-08
  zf-RING_UBOX   1 CpIClelft...dPlv..l.pCGHtFCreClwelskslegafkCP 39 
                   C IC+  f     Plv  l +CGH F  eC+   s +l+++ +CP
    CCD22899.1 104 CAICFCKFLedkYPLVaeLpHCGHRFDLECI---SVWLSKSDTCP 145
                   *****9888788785557767**********...78888888888 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.7
  zf-RING_UBOX   1 CpIClel 7  
                   Cp C+++
    CCD22899.1 144 CPLCRDS 150
                   9999974 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   5.8   3.5e-07   0.00048       1      29 []     103     134 ..     103     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.5e-07
  zf-RING_11   1 eCsICLeefkpgqalfilp...CsHtFHfkCI 29 
                 eC+IC  +f +++   +++   C+H F ++CI
  CCD22899.1 103 ECAICFCKFLEDKYPLVAElphCGHRFDLECI 134
                 9*********988555554448*********9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.8      0.12   1.6e+02      32      43 ..      96     107 ..      94     113 .. 0.67
   2 !   18.5   5.2   9.8e-07    0.0014       2      47 ..     101     151 ..     100     153 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.12
                 HHHHTT-B-TTT CS
  zf-C3HC4_3  32 kllkrkkkCpiC 43 
                 ++++++++C iC
  CCD22899.1  96 SIKDKNAECAIC 107
                 566677777777 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 9.8e-07
                 GSB-TTTSSS...BS-EEET...TEEEEEE-HHHHHHHHHTT-B-TTT--B- CS
  zf-C3HC4_3   2 deeCviCler...prnvvll...pCgHlvlCeeCaekllkrkkkCpiCrrpi 47 
                 + eC iC+ +   ++  ++    +CgH  +  eC + +l+++++Cp+Cr ++
  CCD22899.1 101 NAECAICFCKfleDKYPLVAelpHCGHR-FDLECISVWLSKSDTCPLCRDSV 151
                 579****99655444444332337****.********************876 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.8   2.4e+03      39      47 ..      68      76 ..      65      91 .. 0.62
   2 !   18.8   5.4   9.8e-07    0.0014       2      45 ..     101     142 ..     100     156 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.8
                HHHHHHHSS CS
     FANCL_C 39 eWlrslkes 47
                eW++++ + 
  CCD22899.1 68 EWFEQIDSK 76
                676665433 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 9.8e-07
                 --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHH CS
     FANCL_C   2 eveCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslk 45 
                 + eC iC++++l +++ p  + + ++C+++f  +C+  Wl +  
  CCD22899.1 101 NAECAICFCKFL-EDKYPL-VAELPHCGHRFDLECISVWLSKSD 142
                 579*********.999997.57******************8754 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       7.2   9.9e+03       4       9 ..      80      85 ..      79      90 .. 0.67
   2 !   16.5   5.0   4.4e-06     0.006       1      43 [.     103     148 ..     103     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.2
   zf-RING_5  4 kCfekl 9 
                +C++++
  CCD22899.1 80 SCSKEF 85
                577766 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 4.4e-06
   zf-RING_5   1 hCnkCfeklskeek....fyltsCgHifCekClkkllekeavCpiCr 43 
                 +C +Cf+k+  e+k    + l  CgH f  +C++  l k+++Cp+Cr
  CCD22899.1 103 ECAICFCKF-LEDKyplvAELPHCGHRFDLECISVWLSKSDTCPLCR 148
                 6********.4444346677889***********************8 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.3       1.7   2.3e+03      32      37 ..     103     108 ..      97     117 .. 0.66
   2 ?   11.3   7.4   0.00018      0.24      10      42 ..     119     153 ..     104     157 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.7
  Prok-RING_4  32 sCPlCq 37 
                   C +C 
   CCD22899.1 103 ECAICF 108
                  577764 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00018
  Prok-RING_4  10 kailepCgHlvCkeCfdsk..dlssCPlCqrrisk 42 
                  +a l  CgH +  eC + +  ++ +CPlC+  + +
   CCD22899.1 119 VAELPHCGHRFDLECISVWlsKSDTCPLCRDSVLS 153
                  455677************975666******98765 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.0   0.00069      0.95      15      42 .]     124     147 ..     104     147 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00069
  zf-C3HC4_4  15 eCGhsfClsCisslqkepdgeqllCplC 42 
                  CGh f l+Cis +  ++d     CplC
  CCD22899.1 124 HCGHRFDLECISVWLSKSDT----CPLC 147
                 5***********99999865....9999 PP

>> zf-P11  P-11 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   6.6   0.00063      0.87      21      42 ..     127     148 ..     101     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00063
                 SEEEHHHHHHHHHHSSBETTTS CS
      zf-P11  21 HYLClrClqllLsvserCpiCk 42 
                 H   l+C  + Ls s+ Cp+C+
  CCD22899.1 127 HRFDLECISVWLSKSDTCPLCR 148
                 77789****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1420.90
//
Query:       CCD22900.1  [L=361]
Description: hypothetical protein NDAI_0A07460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        3.8    7.5  13.0        8.5    6.3   5.0    2.4  2  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
        9.1    7.1  12.5       0.13   13.0   1.0    2.5  2  KIAA1430     KIAA1430 homologue


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.0    0.0017        15      25      46 ..      10      38 ..       8      42 .. 0.73
   2 ?    6.3   5.0   0.00095       8.5      24      48 ..      57      77 ..      51      78 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0017
                E-HHHHHHHHH.......TT-B-TTT--B CS
  zf-C3HC4_3 25 lCeeCaekllk.......rkkkCpiCrrp 46
                +C++C+e+ +k       +  +C iC  +
  CCD22900.1 10 ICNQCLENKQKvkltkipNGGQCKICTMS 38
                68888888777777778888888888765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.00095
                EE-HHHHHHHHHTT-B-TTT--B-- CS
  zf-C3HC4_3 24 vlCeeCaekllkrkkkCpiCrrpie 48
                ++Ce+Ca++     + C +C r+i+
  CCD22900.1 57 FICERCARQR----NACQCCMRDIS 77
                59********....******99985 PP

>> KIAA1430  KIAA1430 homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.0   1.5e-05      0.13      27      81 ..     114     168 ..      92     181 .. 0.78
   2 ?   -1.7   4.5      0.58   5.2e+03      48      83 ..     314     347 ..     302     358 .. 0.44

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
    KIAA1430  27 kkklqleeerlkeiereNqiLleklseimrrkgkkksassqsqksktaskslnae 81 
                 +kk +l  ++++   ++N++Ll+kl +i ++++++ +a++++ ++ ta+k++ a+
  CCD22900.1 114 LKKGRLGGAQISGDAEQNNLLLDKLRNILSTETRTADANNHNINKITAPKNIDAS 168
                 5666666677777889****************99888889999999999988443 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.58
    KIAA1430  48 leklseimrrkgk....kksassqsqksktaskslnaenr 83 
                 l+kl + ++ +++    ++++ + +      ++ ++++nr
  CCD22900.1 314 LDKLLQLENSSSRkedsTNNKMKGK------NSAVSKKNR 347
                 5666666666654222222222222......222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1033  (0.0576162); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2581.18
//
Query:       CCD22901.1  [L=263]
Description: hypothetical protein NDAI_0A07470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00011   22.5   3.7    0.00011   22.5   3.7    3.4  3  zf-H2C2_2     Zinc-finger double domain
      0.003   17.9  20.0       0.01   16.2   4.1    2.6  2  zf-C2H2       Zinc finger, C2H2 type
  ------ inclusion threshold ------
      0.068   13.4   0.1        3.9    7.7   0.0    2.2  2  DUF3389       Protein of unknown function (DUF3389)
       0.41   11.6  17.8        1.2   10.2   2.0    2.9  3  zf-C2H2_4     C2H2-type zinc finger
        4.1    7.9   9.8        2.1    8.9   1.0    2.9  2  zf-met        Zinc-finger of C2H2 type


Domain annotation for each model (and alignments):
>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   3.2      0.29     1e+03       4      26 .]     191     217 ..     189     217 .. 0.64
   2 !   22.5   3.7     3e-08   0.00011       1      25 [.     220     246 ..     220     247 .. 0.91
   3 ?    1.2   0.3      0.16   5.6e+02       4      13 ..     253     262 ..     250     263 .] 0.82

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.29
   zf-H2C2_2   4 rHirkHtgekp....yeCplCdkaFkt 26 
                 +H ++ +++ p    + C+ C+  F+t
  CCD22901.1 191 KHKKVTKKKQPtrrsHICKTCSMGFTT 217
                 45544444444446799****999986 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 3e-08
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 +L+rH r Htgek + Cp   C+ +F+
  CCD22901.1 220 HLSRHNRIHTGEKNHSCPykGCNQKFS 246
                 79****************855***997 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.16
   zf-H2C2_2   4 rHirkHtgek 13 
                 +H r+H ++k
  CCD22901.1 253 QHYRTHLKKK 262
                 6999999987 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   4.1   2.9e-06      0.01       1      23 []     206     228 ..     206     228 .. 0.96
   2 !    7.1   8.0    0.0024       8.5       1      23 []     234     258 ..     234     258 .. 0.96

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.9e-06
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 + C+ C++ F+++ +L rH r+H
  CCD22901.1 206 HICKTCSMGFTTSGHLSRHNRIH 228
                 67*******************99 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0024
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 + Cp  +C+++F+r +n  +H+rtH
  CCD22901.1 234 HSCPykGCNQKFSRHDNCLQHYRTH 258
                 68**********************9 PP

>> DUF3389  Protein of unknown function (DUF3389)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0011       3.9      14      57 ..      64     105 ..      59     111 .. 0.80
   2 ?    3.3   0.1     0.026        93       9      28 ..     177     196 ..     173     201 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0011
     DUF3389  14 qheivvrlegeakvtLqAqvddisllgganvivadggevkWslk 57 
                 +he+  +l+  a     ++v++++  +  n++  ++ + +Wslk
  CCD22901.1  64 EHELKTKLNYFA-FN-FSSVNAVQHARRPNIVLTHSDTTSWSLK 105
                 677777777665.33.4689***********************9 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.026
     DUF3389   9 kiivtqheivvrlegeakvt 28 
                 ki  +++ iv+r+++++kvt
  CCD22901.1 177 KITTNKQPIVIRIKKHKKVT 196
                 899999**********9998 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0         5   1.8e+04      10      20 ..      78      87 ..      77      89 .. 0.71
   2 ?   10.2   2.0   0.00032       1.2       1      19 [.     206     224 ..     206     228 .. 0.91
   3 ?    8.3   5.8    0.0013       4.8       1      23 [.     234     258 ..     234     259 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5
   zf-C2H2_4 10 FsskkaLlrHl 20
                Fss +a  +H 
  CCD22901.1 78 FSSVNA-VQHA 87
                889888.6665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00032
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrH 19 
                 ++C+ C+  F+++ +L+rH
  CCD22901.1 206 HICKTCSMGFTTSGHLSRH 224
                 68***************** PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0013
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 + Cp+  C++ Fs++++ l+H +th
  CCD22901.1 234 HSCPYkgCNQKFSRHDNCLQHYRTH 258
                 57**********************9 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.0   0.00058       2.1       2      21 ..     207     226 ..     206     229 .. 0.90
   2 ?    2.8   2.1     0.048   1.7e+02       6      21 ..     241     256 ..     239     263 .] 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00058
      zf-met   2 yCelCnvtfnsesqlksHlq 21 
                  C+ C + f+  ++l  H +
  CCD22901.1 207 ICKTCSMGFTTSGHLSRHNR 226
                 5*****************76 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.048
      zf-met   6 CnvtfnsesqlksHlq 21 
                 Cn +f+   +  +H++
  CCD22901.1 241 CNQKFSRHDNCLQHYR 256
                 8888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1477  (0.0823805); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1962.59
//
Query:       CCD22902.1  [L=210]
Description: hypothetical protein NDAI_0A07480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-35  120.4   0.4    2.6e-35  120.4   0.4    1.6  2  SRP1_TIP1  Seripauperin and TIP1 family
    3.1e-08   33.0   0.9    1.7e-07   30.6   0.9    2.5  1  PIR        Yeast PIR protein repeat
  ------ inclusion threshold ------
       0.12   10.5   1.3       0.14   10.2   1.3    1.1  1  Hid1       High-temperature-induced dauer-formation protein
       0.72    9.7   3.9        0.9    9.4   3.9    1.2  1  RIFIN      Rifin
        2.4    7.1  17.9        3.5    6.6  17.9    1.3  1  FAM199X    Protein family FAM199X
        8.4    5.0   7.2         10    4.7   7.2    1.1  1  MCLC       Mid-1-related chloride channel (MCLC)


Domain annotation for each model (and alignments):
>> SRP1_TIP1  Seripauperin and TIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   0.4   8.7e-39   2.6e-35       3      97 ..      17     111 ..      15     113 .. 0.96
   2 ?   -2.5   0.2       1.9   5.6e+03      56      56 ..     151     151 ..     126     173 .. 0.51

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 8.7e-39
   SRP1_TIP1   3 vaaaqteaevaelevllnDvksnlkeYlslakansgfslPsgvlsvyaalatatddsYttllseidfaevssmitglPWYssRLepaiesalase 97 
                 v+a ++++++ael+++++D++snl++Yl l++ nsgf++P++vl+vy++++t+tddsYt+l++++df++++++it+lPWYssRL paie a+ ++
  CCD22902.1  17 VSALDEAQQTAELQAIIEDINSNLSDYLGLETGNSGFTIPPAVLRVYQQVMTYTDDSYTSLFTALDFDAITETITNLPWYSSRLLPAIERAVPTS 111
                 6778999**********************************************************************************998765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
   SRP1_TIP1  56 t 56 
                  
  CCD22902.1 151 R 151
                 2 PP

>> PIR  Yeast PIR protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.9   5.8e-11   1.7e-07       1      18 []     165     182 ..     165     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 5.8e-11
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 A+aVS I+DGQ+QAT ++
  CCD22902.1 165 ANAVSEITDGQAQATRTV 182
                 89*************995 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.3   4.8e-05      0.14     589     681 ..      98     188 ..      59     200 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4.8e-05
        Hid1 589 sarldsideeeeenssessrieesrsesrspslsevpelksslaitddeskaereksatessssqavsqlremsekarakesaesteesrqes 681
                 s+ l  i+ +  ++s + s+++e+ ++s+++  s+   + ss+a+t++ ++++r  s+ ++++s+a+   + +se   ++ +a+ t ++++ +
  CCD22902.1  98 SRLLPAIERAVPTSSARASTTSEAARSSSTAAASSSAAASSSVAATSSAAASTRASSSATAATSSATA--NAVSEITDGQAQATRTVSQQSTN 188
                 44556667777777778888888888888888888888888888888888888887777777777555..67777777777776666666554 PP

>> RIFIN  Rifin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.9    0.0003       0.9     177     271 ..      75     181 ..       3     191 .. 0.34

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0003
       RIFIN 177 eslitatnyknvtslvkaikeeyeescll.......................klkkskaa.ltsakekekkeasskekikkkvekivekaekkaaaaaa 251
                 +sl+ta +++  t+ +            +                       ++++s+aa  +s+++ ++++a s++++ +++ ++ ++a ++a+aa++
  CCD22902.1  75 TSLFTALDFDAITETI------------TnlpwyssrllpaieravptssarASTTSEAArSSSTAAASSSAAASSSVAATSSAAASTRASSSATAATS 161
                 2222222222222222............02222222223333333222111111111111011222222222222222222222233344444444444 PP

       RIFIN 252 eaaaeataeaekaetaavea 271
                 +a+a+a +e+++ +++a+++
  CCD22902.1 162 SATANAVSEITDGQAQATRT 181
                 44444444444444444444 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  17.9    0.0012       3.5     190     264 ..     112     174 ..      78     192 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0012
     FAM199X 190 rqrasstreswkrssyssastsgvsaasssnasmvssassstasvgssaansaanisrahsdsnlssaaerirds 264
                   ras+t e+ + ss+++as+s  +aasss a+  s+a+s+ as +++aa+s+a           ++a   i d 
  CCD22902.1 112 SARASTTSEAARSSSTAAASSS--AAASSSVAATSSAAASTRASSSATAATSSA----------TANAVSEITDG 174
                 3344555554444443333332..233344444444444443333333333322..........22333333333 PP

>> MCLC  Mid-1-related chloride channel (MCLC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.2    0.0035        10     430     527 ..      95     190 ..      68     207 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0035
        MCLC 430 fqtgnkspevlrafdlpdaearehpevvpsekssvlntslketaellgestkkesstessqsakavsgq.daagtaegspiaekaqlkldsegspeegs 527
                 + + +  p + ra+    a a    e++ s  ++  ++s   ++++   s    +st +s+sa+a++    a++++e     ++aq       +  +g+
  CCD22902.1  95 WYSSRLLPAIERAVPTSSARASTTSEAARSSSTAAASSSAAASSSVAATSSA-AASTRASSSATAATSSaTANAVSE--ITDGQAQATRTVSQQSTNGA 190
                 5556666888889888888888888888888888888888888888887776.555665555555444303333333..33333332222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2175  (0.121312); expected 358.6 (0.02)
Passed bias filter:                      861  (0.0480228); expected 358.6 (0.02)
Passed Vit filter:                       148  (0.00825478); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 1489.58
//
Query:       CCD22903.1  [L=596]
Description: hypothetical protein NDAI_0A07490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.4e-131  438.6  33.3   2.9e-131  438.4  33.3    1.0  1  AA_permease    Amino acid permease
    2.8e-38  131.9  31.7    3.8e-38  131.4  31.7    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.4  33.3  3.2e-135  2.9e-131       1     472 [.      86     547 ..      86     550 .. 0.98

  Alignments for each domain:
  == domain 1  score: 438.4 bits;  conditional E-value: 3.2e-135
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswitvlaleltaa 97 
                  hv++++lg  iGtgl+v++g+ l+ aGp+ ++l+y l+ +v+++++++ ge+a+ +p   ++f+tyas f+++ +Gf++ ++++++w+tvl+lel++a
   CCD22903.1  86 HVIMMTLGTGIGTGLLVANGKGLALAGPAPLVLGYGLVSFVTYFMIQAAGEMAVTYPtMPASFNTYASIFVSKPFGFATVWLFCIQWLTVLPLELITA 183
                  9************************************************************************************************* PP

  AA_permease  98 siliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakee 194
                  s++i++w  ++ ++  +v++++f+v+ll+i+++gvk+yge+efi++++ki++i++fii++i++++gg++ +g+ g +++ ++g+++++   +      
   CCD22903.1 184 SMTIKYW--NDTIN-PDVFIVIFYVFLLFIHFFGVKAYGETEFIFNSCKILMIAGFIILSIVINCGGAGRDGYiGNKYWINPGAFASESPAAR----- 273
                  *******..88888.*********************************************************************777776666..... PP

  AA_permease 195 egafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa..aspfvifikesgvsvlap 290
                     fk++++++v+ +f++ G+el  +   E k+P+ks P a +q ++ri+i+Y+l ++lig+ vp ++++l+ +  sa  asp+v++ + +gv+v+++
   CCD22903.1 274 ---FKGVAYILVTGYFSYGGTELFSLSVNEQKNPRKSTPAAAKQSIYRILIIYLLTMILIGFNVPHDSDQLMGAGGSAthASPYVLAASLHGVKVVPH 368
                  ...**********************************************************************9999999****************** PP

  AA_permease 291 linaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl 388
                  +inavil++++s+ans+ly+++R++ sla++g+aPk++++v+++g+Plra+ ++ +++++++++ s + +  ++f++l ai++l+ l++w +i +s++
   CCD22903.1 369 FINAVILISVVSVANSALYASPRLMRSLAEQGYAPKWFNYVDREGRPLRALCICGLFGVIGFVACSPQEE--QAFTWLAAIAGLSELFTWSSIFISHI 464
                  **************************************************************99998888..************************** PP

  AA_permease 389 rfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvkn 472
                  rfR a+k+qg+s+eelg++a ++++g+++ ++++++++++++++a+ + +k+ ++ +a+ f+++yl ++l+l++++g++++ + 
   CCD22903.1 465 RFRMAMKVQGKSLEELGYRATTGIWGSVYSVFFNMLVFIAQFWVALSP-PKSNGKYDAEGFFESYLAAPLWLVFYFGYMIYSRD 547
                  ********************************************9999.9999999************************9886 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.4  31.7   4.2e-42   3.8e-38       5     404 ..      86     507 ..      83     519 .. 0.80

  Alignments for each domain:
  == domain 1  score: 131.4 bits;  conditional E-value: 4.2e-42
  AA_permease_2   5 safalvigsvigsgifvkn....laasggpalilwvwiavligslavllvyaElssa.lprsgGiyvytkaafgkkvaflsawfnwfayvpvlasi 95 
                     ++++++g+ ig+g +v+n    ++a + p+++ +++++ + ++++++    E++ + +       +y++++ +k+++f ++w+++++++ vl++ 
     CCD22903.1  86 HVIMMTLGTGIGTGLLVANgkglALAGPAPLVLGYGLVSFVTYFMIQA--AGEMAVTyPTMPASFNTYASIFVSKPFGFATVWLFCIQWLTVLPLE 179
                    689******************655555666688888888888875555..56776443888999999***************************98 PP

  AA_permease_2  96 lsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.stetdtffpn....g 186
                    l+ a  ++ + ++ +++++     ++++++++++ +i+ +g+k ++   +i   +ki l+++ +iil +++ +gg   +   +++ +++p+     
     CCD22903.1 180 LITASMTIKY-WNDTINPD-----VFIVIFYVFLLFIHFFGVKAYGETEFIFNSCKI-LMIAGFIILSIVINCGGAGRDGyIGNKYWINPGafasE 268
                    8777777766.55566665.....466889999999999******************.68888888999999998887665333333444432213 PP

  AA_permease_2 187 wp.....gvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei.....anlsnlgsvaalffeavggk 270
                    +p     gv+  l +  +s++G e  +  ++e+k+  k +p a+  ++  +l++yll++i++ + vp d+        +++  s++ l +   g k
     CCD22903.1 269 SPaarfkGVAYILVTGYFSYGGTELFSLSVNEQKNprKSTPAAAKQSIYRILIIYLLTMILIGFNVPHDSDqlmgaGGSATHASPYVLAASLHGVK 364
                    333332235778889*****************9998578*****************************8873345422222233477777777789 PP

  AA_permease_2 271 vvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyllli 366
                    vv ++++++i +s++  +n+a+++s+r++++la++g+ P++f+ v++ g+p+ra+++  ++ +i +++++   + a+++l++++ l+ ++ +  ++
     CCD22903.1 365 VVPHFINAVILISVVSVANSALYASPRLMRSLAEQGYAPKWFNYVDREGRPLRALCICGLFGVIGFVACSPQEEQAFTWLAAIAGLSELFTWSSIF 460
                    ****************************************************************999998777*********************** PP

  AA_permease_2 367 igalilrkkrphlkr......pgkilvaiig....alfllfllvalff 404
                    i+ +  r+ ++++++      + +++++i g    ++f+ ++++a f+
     CCD22903.1 461 ISHIRFRMAMKVQGKsleelgY-RATTGIWGsvysVFFNMLVFIAQFW 507
                    *************998888851.3444444422224444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4178.12
//
Query:       CCD22904.1  [L=619]
Description: hypothetical protein NDAI_0A07500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     8e-128  427.0  33.0     1e-127  426.7  33.0    1.0  1  AA_permease     Amino acid permease
    4.6e-38  131.1  34.1    5.7e-38  130.9  34.1    1.0  1  AA_permease_2   Amino acid permease
     0.0028   16.5  22.0     0.0064   15.4  15.6    2.5  2  Spore_permease  Spore germination protein
  ------ inclusion threshold ------
       0.33   11.5   3.1       0.22   12.1   0.7    1.9  2  Pet100          Pet100


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  426.7  33.0  2.3e-131    1e-127       1     475 [.      98     560 ..      98     563 .. 0.99

  Alignments for each domain:
  == domain 1  score: 426.7 bits;  conditional E-value: 2.3e-131
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswitvlaleltaa 97 
                  h+l+i+lg  i tgl+vg+g vls+aGp+g++++y ++ v+i+++++s ge+ + +   +g f+ y+s  ++p+lGf+ +++y f+w+tvl+l+l++a
   CCD22904.1  98 HLLMISLGTGIATGLLVGNGQVLSKAGPGGLVIGYFISSVMIYCMIQSAGELGICYRgLVGNFTRYSSLLIDPSLGFALSILYTFQWLTVLPLQLVTA 195
                  99************************************************************************************************ PP

  AA_permease  98 siliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakee 194
                  +i+i+fw   tdl+  ++++a++++v++++nl+g+++y+eaef+ +l+ki++ii+fii++ii+++gg++n+g+ g+++++++g+     + +g     
   CCD22904.1 196 AITIEFW---TDLN-PDIFVAIIFIVVIVVNLFGARGYAEAEFFCNLCKILMIIGFIILSIIIISGGAGNDGYiGAKYWKNPGA-----FANG----- 279
                  *******...8888.7999*****************************************************************.....****..... PP

  AA_permease 195 egafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa......aspfvifikesgvs 286
                     fk+++ vf  ++f++ Gie +++  +E ++P k +P   ++v +ri+++Y+l ++l+ +lvp+++++ll + +++      aspfvi+ +++gv+
   CCD22904.1 280 ---FKGVCTVFTYAAFSYGGIEVLVLSIDEQENPIKVVPNCCKKVAYRILFIYLLTTILVCFLVPYTSPQLLGSLNKGensgshASPFVIAVESHGVK 374
                  ...**********************************************************************99999******************** PP

  AA_permease 287 vlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwllii 384
                  v++++inavil++++s+anss+ys+ R+l sl+++g++P +l+++++rg+P+r  ++s+ ++l++++++s + +   vf++llais+l++l++wl+i+
   CCD22904.1 375 VVPHFINAVILISVISVANSSVYSSGRLLLSLSEQGTFPQFLNYIDQRGRPIRCFVISLTFGLIGFVASSEKRQ--DVFTWLLAISGLSQLFIWLAIC 470
                  ******************************************************************99999999..********************** PP

  AA_permease 385 lsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrp 475
                  ls++rfR a+k+q++s++e+g+ka+++ +g+++++++ ++ l++++++a+++v k + ++++ sf++ yl ++++l+ ++g+kl++ n+ p
   CCD22904.1 471 LSHIRFRDAMKTQKKSMDEVGYKAQTGYWGSWVAVLIGLFSLVTQFWVAIAPVDKNG-KLDVMSFFQNYLAFPIVLVAYFGHKLYYGNWCP 560
                  ****************************************************88888.56****************************987 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9  34.1   1.3e-41   5.7e-38       6     410 ..      99     526 ..      94     548 .. 0.78

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 1.3e-41
  AA_permease_2   6 afalvigsvigsgifvkn....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasils 97 
                    ++++++g+ i +g +v n    + a +g ++i +++ +v+i+++++++  + +++     g    y++ ++ + ++f  +++++f+++ vl++ l+
     CCD22904.1  99 LLMISLGTGIATGLLVGNgqvlSKAGPGGLVIGYFISSVMIYCMIQSAGELGICY-RGLVGNFTRYSSLLIDPSLGFALSILYTFQWLTVLPLQLV 193
                    6778888888899999989654455588889999999999887666665444455.444444444555557************************* PP

  AA_permease_2  98 vaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl...stetdt..ffpngwp 188
                     aa ++ +++  dl+++     +++++i+i+v+++n++g +++a + +++ ++kil ++i +iil +i+++gg  ++       +++   f+ng +
     CCD22904.1 194 TAAITIEFWT--DLNPD-----IFVAIIFIVVIVVNLFGARGYAEAEFFCNLCKIL-MIIGFIILSIIIISGGAGNDGyigAKYWKNpgAFANGFK 281
                    9999998876..68786.....67899****************************5.777788899999999999888777444444558888999 PP

  AA_permease_2 189 gvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei...........anlsnlgsvaalffeavggkv 271
                    gv  +++ +++s++G+e+ +   +e+++  k vp  +  ++  +l++yll++i++ + vp  +            + ++   s++ + +e  g kv
     CCD22904.1 282 GVCTVFTYAAFSYGGIEVLVLSIDEQENpiKVVPNCCKKVAYRILFIYLLTTILVCFLVPYTSPqllgslnkgenSGSHA--SPFVIAVESHGVKV 375
                    9************************7766666666665555555555555555555555554443333332210044333..3466777777789* PP

  AA_permease_2 272 vaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas...saaynfllsvsslgliisyll 364
                    v ++++++i +s++  +n+ v++s r+l +l+++g++P f++ ++++g+pir+ ++++++ li ++++   s    + +++ll++s l+ ++++l+
     CCD22904.1 376 VPHFINAVILISVISVANSSVYSSGRLLLSLSEQGTFPQFLNYIDQRGRPIRCFVISLTFGLIGFVAS---SekrQDVFTWLLAISGLSQLFIWLA 468
                    *************************************************************8877655...3456********************* PP

  AA_permease_2 365 liigalilrkkrphlkr.............pgkilvaiigalfllfllvalffppkgpa 410
                    + ++ +  r+ ++ +k+             +g + va ++ lf+l++ ++ ++ p+  +
     CCD22904.1 469 ICLSHIRFRDAMKTQKKsmdevgykaqtgyWGSW-VAVLIGLFSLVTQFWVAIAPVDKN 526
                    *************999999999999998866656.777777777777777777766554 PP

>> Spore_permease  Spore germination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4  15.6   1.4e-06    0.0064       6     234 ..      98     339 ..      93     346 .. 0.75
   2 !    4.3   0.4    0.0033        15      33      75 ..     499     541 ..     489     555 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-06
  Spore_permease   6 qlfvlivsfqlGvgiltlprsvaeqatpdgWisvllagiiililvllmlk......llkkfpektliellkkilgkwLGsllsilfilyFlllaa 94 
                      l+++   + +++g+l+  + v  +a+p    +++++ +i  ++++ m++      ++++    ++  +++ ++   LG+ lsil+   +l+++ 
      CCD22904.1  98 HLLMISLGTGIATGLLVGNGQVLSKAGPG---GLVIGYFISSVMIYCMIQsagelgICYRGLVGNFTRYSSLLIDPSLGFALSILYTFQWLTVLP 189
                     55555566777778888888888888544...466777777777777765222222666677899****************************** PP

  Spore_permease  95 felRefseliqvf..lledtplwiiilllllvilYlvvkGi..eslareflfiivilliilllillfslklaeiknl......rP.vlgngikpv 178
                      +l + +  i+++  l +d+ ++ii +++++v l+ + +    e ++ +++ i++i+ +i+l i+++s +  +  ++       P  + ng+k v
      CCD22904.1 190 LQLVTAAITIEFWtdLNPDIFVAIIFIVVIVVNLFGARGYAeaEFFC-NLCKILMIIGFIILSIIIISGGAGNDGYIgakywkNPgAFANGFKGV 283
                     *************3335555555566666666666555433113344.899999999999999999998887766663333343569******** PP

  Spore_permease 179 lkslkttslsflgveillllvpflkdkkkvkkaallgvlistllyllttlivilvl 234
                        ++ +++s++g+e+l+l +   +++ kv+  + + v++ +l++ l+t i +++l
      CCD22904.1 284 CTVFTYAAFSYGGIEVLVLSIDEQENPIKVVPNCCKKVAYRILFIYLLTTILVCFL 339
                     ************************************99999988766666666654 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0033
  Spore_permease  33 pdgWisvllagiiililvllmlkllkkfpektliellkkilgk 75 
                       +W++vl++++  +  ++++++ ++k+ + +++++++++l  
      CCD22904.1 499 WGSWVAVLIGLFSLVTQFWVAIAPVDKNGKLDVMSFFQNYLAF 541
                     458********************************99998865 PP

>> Pet100  Pet100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.9   8.5e+03      30      55 ..      63      91 ..      58      98 .. 0.49
   2 ?   12.1   0.7   4.8e-05      0.22      11      34 ..     535     558 ..     526     564 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.9
      Pet100 30 yfeefvvktkreffp...peekelreele 55
                 f++f    kr+  +    + ++++++l+
  CCD22904.1 63 HFKNFLNGFKRQKQNeegADLEMQDTQLS 91
                56666666666554444322222444444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.8e-05
      Pet100  11 fglYvffPvgvfyyfnqpeyfeef 34 
                 f  Y++fP+++  yf++  y+ ++
  CCD22904.1 535 FQNYLAFPIVLVAYFGHKLYYGNW 558
                 457******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1179  (0.0657594); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 4416.16
//
Query:       CCD22905.1  [L=866]
Description: hypothetical protein NDAI_0A07510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-61  206.1   0.0    1.1e-60  205.2   0.0    1.4  1  SNF2_N      SNF2 family N-terminal domain
    2.9e-15   56.6   0.0    7.3e-14   52.1   0.0    2.9  2  Helicase_C  Helicase conserved C-terminal domain
      3e-13   50.1   0.4    7.6e-12   45.6   0.0    2.9  3  ResIII      Type III restriction enzyme, res subunit
    8.8e-07   28.4   6.6    3.4e-06   26.4   2.1    3.1  2  HDA2-3      Class II histone deacetylase complex subunits 2 a
      1e-05   25.4   0.0    2.4e-05   24.2   0.0    1.6  1  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.045   13.9   0.1       0.23   11.6   0.0    2.3  2  Fer4_14     4Fe-4S single cluster domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.2   0.0   3.6e-64   1.1e-60       1     349 [.     260     598 ..     260     599 .. 0.86

  Alignments for each domain:
  == domain 1  score: 205.2 bits;  conditional E-value: 3.6e-64
                 HHHHHHHHH.......................................HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxx RF
      SNF2_N   1 yQkeavkwmlkReqnlqdleaalrkllktldgekiyvnpatgevveesaeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkek.......krk 92 
                 +Q+e+vk++       +d+ + l +       ++  + +++ +  +  +e++++++G++LaDemGLGKT++++a+i+++ +k++   ++       +  
  CCD22905.1 260 HQREGVKFI-------YDCINGLSQ-------VEASTAVVDPTQQSMILEKNSDINGCLLADEMGLGKTLMTIAVIWTL-YKQTPLVKNipcsqsgVPL 343
                 899999999.......556655553.......3444455566677778999**************************54.4455555554565555555 PP

                 ....S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH..-----------------EEEE-HHHHHHHT......TTS-S-S..-SEEEES-GG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
      SNF2_N  93 dtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk..mkkkntkvapklladydvvittYdvlsreaelqkkrsvlkqve..wkrvvlDEgh 187
                   l + +Li++P +l+ +W++e++++++  ++ +l+ +++++  m+ + +k++ k++++y+v+i +Y+++ +++       +l++++  ++++v+DEgh
  CCD22905.1 344 SGLCKKFLIICPVTLIGNWKREFKKWLNLNRIGILTLNSNNTpeMDRNAVKNFLKVQRTYQVLIMGYEKVLSVS------AELTNQKnlIDMLVCDEGH 436
                 555555*******************************99998889999999*******************9888......44544443689******** PP

                 GT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHHHHH..............HHHHHHHHHHHTT-STTEE--- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 188 tlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqrpie..............aqaekgrsrLlqllqrlmlrra 272
                 +lk++tsk+ +++++L+ +++++l+GTPiqn+l+++y++++f++++++g++  f+k++  pi+              +  e+++++++++ +++ lrr+
  CCD22905.1 437 RLKSGTSKVLQVLKNLDVKRKILLSGTPIQNDLNEFYTIIDFINPGILGSFPYFKKRYMVPITrardtsnryneeilELGEERSREMIEITKQFTLRRT 535
                 *************************************************************************************************** PP

                 GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 273 kkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacnhpql 349
                 ++ ++++lPp+t  i+f+k ++ +++++                 ++ a+l+++++s +  l+l++ l+++cn+p+l
  CCD22905.1 536 NSILTEYLPPRTDIILFCKPTETQLQAFD--------------NAIRGAKLDFNTASFNSTLGLITLLKKICNSPSL 598
                 *****************************..............3333344555555556699***********9987 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.23     7e+02      26      72 ..     363     408 ..     347     437 .. 0.70
   2 !   52.1   0.0   2.4e-17   7.3e-14       6     110 ..     633     739 ..     626     740 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEE CS
  Helicase_C  26 idrlekvklllekkgikvavlhgelpqnereeileqfn..kgesdvLia 72 
                 +++++  k+l + + i +++l+++ + +  + ++++f   + +++vLi 
  CCD22905.1 363 KREFK--KWL-NLNRIGILTLNSNNTPEMDRNAVKNFLkvQRTYQVLIM 408
                 33553..556.566799******88888888888888647788888874 PP

  == domain 2  score: 52.1 bits;  conditional E-value: 2.4e-17
                 HHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHH CS
  Helicase_C   6 llellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn..kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiq 102
                 ll+ l ++  ++ki+i++n++++l+ ++ ll ++++ +++l+g++  ++r+ i+ +fn    ++ +L++ + ++ G+++ +++ ++ fd ++n++   q
  CCD22905.1 633 LLKHLRTNCPEEKIVIVSNYTQTLDIIENLLLSEQMIFCRLDGSTLPKQRDSIVMSFNrnPSTFAFLLSAKSGGVGLNLVGASRLVLFDNDWNPSIDLQ 731
                 34444777899*************99666667778**********************97556777********************************** PP

                 HHTTSSST CS
  Helicase_C 103 riGRtgRa 110
                 ++ R++R 
  CCD22905.1 732 AMSRIHRD 739
                 *******6 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1         1   3.1e+03      69      96 ..     189     218 ..     183     243 .. 0.70
   2 !   45.6   0.0   2.5e-15   7.6e-12      21     170 ..     277     465 ..     255     466 .. 0.80
   3 ?    1.0   0.0      0.13   3.8e+02      35      63 ..     624     652 ..     554     670 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1
                 HHHHHGGGGTGG......GEEEESSS-B-- CS
      ResIII  69 qtleefkkflseayke..igkkvsgdkkka 96 
                 qt ++fk +l+++++    ++ v++d+++ 
  CCD22905.1 189 QTVKKFKTVLPKPNEHtsLSTTVNQDTNST 218
                 899999999999876666666666666665 PP

  == domain 2  score: 45.6 bits;  conditional E-value: 2.5e-15
                 .....................TTSEEE.EEESTTSTHHHHHHHHHHHH-S......................-EEEEESSHHHHHHHHHHGGGGTGG.. CS
      ResIII  21 s...................krdkrgl.ikmaTGtGKTlvaaklierllkkgkee.................kflflvprkslleqtleefkkflseay 82 
                 +                   + d +g+ ++ + G GKTl+ +++i+ l+k+ +                   kfl+++p  +l+  +++efkk+l+ ++
  CCD22905.1 277 QveastavvdptqqsmilekNSDINGClLADEMGLGKTLMTIAVIWTLYKQTPLVknipcsqsgvplsglckKFLIICPV-TLIGNWKREFKKWLNLNR 374
                 1444444444444477777666667776999*******************9887799*********************97.57788*********9886 PP

                 ..GEEEESSS-B--................-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS..TTTHHHHHT---SEEEEEESS-S CS
      ResIII  83 keigkkvsgdkkka.........kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.kswreilekfkeavllglTATpe 170
                   ig  + + ++++         + k + + ++l++ ++++ + s     ++ +++++ +d++++DE Hrl++  +++ ++l++++ + ++ l++Tp 
  CCD22905.1 375 --IGILTLNSNNTPemdrnavknFLKVQRTYQVLIMGYEKVLSVS-----AELTNQKNLIDMLVCDEGHRLKSGtSKVLQVLKNLDVKRKILLSGTPI 465
                 ..444433333333466677788899999****************.....9999999****************85589999999999*********95 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.13
                 STHHHHHHHHHHHH-S.....-EEEEESS CS
      ResIII  35 tGKTlvaaklierllkkgkeekflflvpr 63 
                 +GK +v+++l ++l+++ +eek++++ + 
  CCD22905.1 624 SGKLMVLMSLLKHLRTNCPEEKIVIVSNY 652
                 79*******************99999764 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.054   1.6e+02     227     262 ..     157     214 ..     131     222 .. 0.66
   2 !   26.4   2.1   1.1e-09   3.4e-06      58     263 ..     589     782 ..     545     798 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.054
                 -......................--EEEEEETTSHHHHHHHHTS-TT-HHHHHHHHHH CS
      HDA2-3 227 k......................lpiirlvpinSieHvkLcfkkdedepeylekviss 262
                 +                      +pi +l +++++  +k   +k +++ + +++v + 
  CCD22905.1 157 SitppstasstasnvlpstskaqIPITQLFTVQTVKKFKTVLPKPNEHTSLSTTVNQD 214
                 15555555555555566666666********************555555555555554 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 1.1e-09
                 HHHHHH-GGGT.--TT--S-S-STTHH..HHHHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S CS
      HDA2-3  58 lslvanHPsLL.vdHympkklllkelp..eklaetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkk 153
                 l+ + n PsL+  d y  +k++ ++    +  + +SgK+ vl  l++ +  +      ++++v++  ++ld+iE lll+ ++ + r++g +l ++  + 
  CCD22905.1 589 LKKICNSPSLIkNDSYFTSKIDHSQYQraNFNVLNSGKLMVLMSLLKHLRTNC--PEEKIVIVSNYTQTLDIIENLLLSEQMIFCRLDGSTLPKQRDSI 685
                 55566667775246677777776665400445668**************9888..7789*********************************9888887 PP

                 -..................-SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH----.------EEEEEETTSHHHHHHHHT..S- CS
      HDA2-3 154 skdtkknsrktkeklkkkihsltihllsttrqltkdksllenikfdliiafDssvdtsspsveslrtqnr.kknklpiirlvpinSieHvkLcfk..kd 249
                               ++ +   +t+ +l + +        l+ + ++ ++ fD + ++s +   + r+++  +k+++ i+rl+++  i+   L+++  k+
  CCD22905.1 686 V-------------MSFNRNPSTFAFLLSAKSGGVG---LNLVGASRLVLFDNDWNPSIDLQAMSRIHRDgQKRPCYIYRLITTGCIDEKILQRQlmKH 768
                 7.............2334456777777777666444...55555666889********99999999987614556**************9999997666 PP

                 TT-HHHHHHHHHHH CS
      HDA2-3 250 edepeylekvissi 263
                 + +++ l++ i+ +
  CCD22905.1 769 NLSQKFLDSSIENT 782
                 77777777666655 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0     8e-09   2.4e-05      15     174 ..     301     470 ..     287     472 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 8e-09
                 CEEEEEESTTSSHHHHHHHHHHHHHHHS...........TTSTS.......-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET....TSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxx RF
        DEAD  15 gdvlvaaeTGsGKTlaflipvlqivyet...........kgktg.......pkalivePtreLaeqtlnnlkkfkkyidlrvlliig....gvaardql 91 
                 + +l+a e G GKTl+  i+v+ ++y++               g       +k li++P   L+ +  +++kk+++  ++ +l + +    + +++  +
  CCD22905.1 301 NGCLLADEMGLGKTLM-TIAVIWTLYKQtplvknipcsqS---GvplsglcKKFLIICPV-TLIGNWKREFKKWLNLNRIGILTLNSnntpEMDRNAVK 394
                 45789999*******9.56666688876677666655550...055555557*******8.5999***********64433433322112222222222 PP

                 HHH..HTTCSEEEEEHHHHHHHHHCTSSHCTTE.EEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HHHH CS
                 xxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
        DEAD  92 skl..dngvdivvgtpgrlddllstgklnlsqv.rflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kdvk 174
                 + l  +++++++++  ++++++   +  n +++  +lV DE +rl +   s ++ ++l++l     d k   + i+lS T+  +d++
  CCD22905.1 395 NFLkvQRTYQVLIMGYEKVLSVS-AELTNQKNLiDMLVCDEGHRLKSG-TS-KVLQVLKNL-----DVK---RKILLSGTPIqNDLN 470
                 33322466************955.455555555499**********96.44.455557777.....333...589999999866665 PP

>> Fer4_14  4Fe-4S single cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.2   6.7e+03      36      72 ..     444     477 ..     437     480 .. 0.69
   2 ?   11.6   0.0   7.6e-05      0.23      64      97 ..     627     660 ..     602     674 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.2
     Fer4_14  36 qilkdlkkseikiqglvltGGePLhyenkkellklvk 72 
                 ++l+ lk+ ++k++   l+ G P+   + +e++++++
  CCD22905.1 444 KVLQVLKNLDVKRK--ILLSGTPI-QNDLNEFYTIID 477
                 55666788888888..56667888.446777777776 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.6e-05
     Fer4_14  64 kkellklvkrlkeeypekkiwletngtleielek 97 
                   +l+ l+k+l++++pe ki + +n+t  +++ +
  CCD22905.1 627 LMVLMSLLKHLRTNCPEEKIVIVSNYTQTLDIIE 660
                 56899**********************9998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5864.74
//
Query:       CCD22906.1  [L=962]
Description: hypothetical protein NDAI_0A07520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-38  131.5   0.0    1.5e-37  129.3   0.0    2.1  2  Peptidase_M28  Peptidase family M28
     0.0015   17.6   0.0     0.0036   16.4   0.0    1.6  1  Peptidase_M42  M42 glutamyl aminopeptidase
     0.0018   18.0   0.0     0.0024   17.6   0.0    1.3  1  Peptidase_M20  Peptidase family M20/M25/M40


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   0.0   2.4e-41   1.5e-37       1     196 [.     139     326 ..     139     328 .. 0.95
   2 ?   -1.4   0.0      0.27   1.6e+03     125     173 ..     829     877 ..     801     879 .. 0.73

  Alignments for each domain:
  == domain 1  score: 129.3 bits;  conditional E-value: 2.4e-41
                    EEEEEESTTCESE.EEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHHHHCCCTTEEEEE CS
  Peptidase_M28   1 Nviatlegkatde.vlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafakakpelkkiaavl 95 
                    N+i++legk+++   lll++H+Dsv++  +    GA+D++ g+a+lL l++++ +  ++p+r+++f f++ EE+gllG++ f+ ++p++k ++++l
     CCD22906.1 139 NIIVKLEGKDKALpGLLLSSHFDSVPT--ST---GATDDGKGIASLLALLEYFCQ--KQPERTLIFNFNNNEEFGLLGASVFF-EHPWSKLVHYFL 226
                    9*********84459***********9..99...********************8..69************************.************ PP

                    EECS-SSSS--EEEHHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STTHHHHTTT--EEEECTSSS-TTTTSTTSSGGGB-HHHHHHHH CS
  Peptidase_M28  96 nlDmvgsggkellfesgdkssselekelkalakpvgraaaedpfdersgrgrsDhspflkagvpvldlaetgfpevyHtprDtldnidkdtlaria 191
                    nl+ +g ggk++lf+++d s +++ ke+  l +p+g++++++ f +r + +++D+ +++++g  ++d+a+ + +  yHt +D +++ + ++l+++ 
     CCD22906.1 227 NLEGTGVGGKAVLFRTSDVSTAQMYKEAV-LKQPFGNSVYQQGFYNRYIHSETDYKVYEENGLRGWDIAFYKPRALYHTVNDSISYTSREALWHML 321
                    **************888888888888876.99**************************************************************98 PP

                    HHHHH CS
  Peptidase_M28 192 elvle 196
                    ++ l+
     CCD22906.1 322 HTSLQ 326
                    87765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.27
                    HHHHHTT-TTSCCEEEEES.STT-STTHHHHTTT--EEEECTSSS.-TTTT CS
  Peptidase_M28 125 alakpvgraaaedpfders.grgrsDhspflkagvpvldlaetgf.pevyH 173
                    +  +pv++++   + de++ +++++D ++  + g+  l+l + +f ++ yH
     CCD22906.1 829 DKSSPVKQIQ--IFADENNnTDVTDDKIIRWRDGIDELQLHKLDFeKKFYH 877
                    5556666653..344444459999999999999999999988888344457 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     6e-07    0.0036     131     178 ..     168     215 ..     155     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6e-07
                    TTHHHHHHHHHHHHHHHHHCTSS-SSEEEEEEESTCTTTSHHHHHHHH CS
  Peptidase_M42 131 kalDdragvavllellkelkeeeleatvylvatvqEEvGlrGaktsae 178
                     a Dd  g+a ll+ll+ + +++ e t+++ ++++EE Gl Ga+++ e
     CCD22906.1 168 GATDDGKGIASLLALLEYFCQKQPERTLIFNFNNNEEFGLLGASVFFE 215
                    578********************99******************99866 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     4e-07    0.0024       1      95 [.     155     226 ..     155     558 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4e-07
                    EEEEES-BSSTTCGGGSSSTTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCESEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwttpfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvdavf 95 
                    ll sH D+Vp    ++                 Ga+d+  g++++l++l+ + +++  p++t+ + f  +EE g  Ga  ++e+    + v++++
     CCD22906.1 155 LLSSHFDSVP----TS----------------TGATDDGKGIASLLALLEYFCQKQ--PERTLIFNFNNNEEFGLLGASVFFEHPW-SKLVHYFL 226
                    6899999999....33................3899999****************8..799***********87799999999443.33555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (962 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 6016.62
//
Query:       CCD22907.1  [L=362]
Description: hypothetical protein NDAI_0A07530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-06   27.0   4.1    5.7e-06   26.5   0.1    2.8  2  DUF4451   Domain of unknown function (DUF4451)
  ------ inclusion threshold ------
      0.097   12.3   0.0       0.32   10.6   0.0    1.8  1  DUF1233   Putative excisionase (DUF1233)


Domain annotation for each model (and alignments):
>> DUF4451  Domain of unknown function (DUF4451)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.9      0.11   9.6e+02      60     100 ..     104     154 ..      62     168 .. 0.59
   2 !   26.5   0.1   6.4e-10   5.7e-06       8     103 ..     167     293 ..     160     303 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.11
     DUF4451  60 ngslvpePillrskkrrkakek........ekegivCpk..Cneiievsls 100
                 ++ lv  P  ++++k +k  ++         +++i Cp   C+++ e s+ 
  CCD22907.1 104 KNCLVYLPRTFQHHKIHKLVKQrqfelgysLRKNIQCPLsaCSNVKESSAL 154
                 444444444443333333222233444444666777776667765444444 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 6.4e-10
     DUF4451   8 eprvvrgekdknekkeglCpiCeeevekkekflklknssyekhlsfeHGvl...sngslvpePill.........rskkrrkakek............. 81 
                 +++++r+   k+ kk ++C++C       +++++    ++ +hl ++HG+    +++ +++ P+ l                                 
  CCD22907.1 167 SYKYIRS---KEGKKDVMCRFCL-----GSNWIEG--VHFFRHLFLAHGIIteiNQEGKAKLPYKLinkeinqntT---------Lyieqlnipkfsrt 246
                 6778888...88999********.....9***998..99************8887778899999994555444440.........35555555555566 PP

     DUF4451  82 .........................ekegivCpkCneiievslsknk 103
                                          ++++++Cp+C+++++++ ++++
  CCD22907.1 247 llpflsvsfipmpfkyysrrlnggfRRTHVLCPSCSNWVHLGWFEHD 293
                 666666666666666666666666699999**********9987765 PP

>> DUF1233  Putative excisionase (DUF1233)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.5e-05      0.32       8      42 ..     164     198 ..     161     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.5e-05
     DUF1233   8 kWVseevlialtGLkkgtikraRkkswleGreYkh 42 
                 +WVs + + +++G k  + + +    w+eG+++ +
  CCD22907.1 164 NWVSYKYIRSKEGKKDVMCRFCLGSNWIEGVHFFR 198
                 7****************99999999*******854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2633.50
//
Query:       CCD22908.1  [L=370]
Description: hypothetical protein NDAI_0A07540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.1e-10   38.5  15.0      2e-05   24.8   3.5    3.1  3  zf-C2H2      Zinc finger, C2H2 type
    3.8e-07   30.4  11.0    0.00061   20.4   2.0    3.1  3  zf-C2H2_4    C2H2-type zinc finger
    1.7e-06   28.2   0.3    1.7e-06   28.2   0.3    2.8  3  zf-H2C2_2    Zinc-finger double domain
    9.5e-06   25.8   5.9    0.00096   19.5   1.4    2.8  2  zf-met       Zinc-finger of C2H2 type
    0.00055   20.2   5.6     0.0022   18.2   0.8    2.6  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
      0.049   13.6   1.5      0.049   13.6   1.5    2.2  2  zf-C2H2_6    C2H2-type zinc finger
       0.17   12.2   3.7       0.96    9.8   3.5    2.3  2  zf-C2H2_8    C2H2-type zinc ribbon
       0.43   10.9   3.2       0.36   11.2   0.4    2.0  2  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
        2.6    7.9   8.3        1.1    9.1   2.4    2.7  2  zf-H2C2_5    C2H2-type zinc-finger domain


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.1   6.1e+03       7      17 ..      59      69 ..      59      70 .. 0.85
   2 !   24.8   3.5     1e-08     2e-05       3      23 .]     260     280 ..     258     280 .. 0.97
   3 !   20.5   1.2   2.3e-07   0.00045       1      23 []     286     310 ..     286     310 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.1
                TEEESSHHHHH CS
     zf-C2H2  7 gksFkrksnLk 17
                gks++++ +L 
  CCD22908.1 59 GKSYRSPNSLS 69
                79****99985 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 1e-08
                 ETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                 C++C+k+Fkr+s+L++H+++H
  CCD22908.1 260 CKHCNKRFKRPSSLNTHMNIH 280
                 *******************99 PP

  == domain 3  score: 20.5 bits;  conditional E-value: 2.3e-07
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 y+Cp  +C ksF+ ksn+ rH++ H
  CCD22908.1 286 YVCPyeECRKSFNAKSNMLRHYKLH 310
                 99*********************99 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         3   5.9e+03       6      17 ..      58      69 ..      56      70 .. 0.82
   2 !   20.4   2.0   3.1e-07   0.00061       2      23 ..     259     280 ..     258     281 .. 0.93
   3 !   14.3   1.1   2.8e-05     0.056       1      23 [.     286     310 ..     286     311 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3
   zf-C2H2_4  6 CgksFsskkaLl 17
                 gks++s+++L+
  CCD22908.1 58 HGKSYRSPNSLS 69
                689*****9986 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 3.1e-07
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                  C++C+k+F+++++L++H++ h
  CCD22908.1 259 GCKHCNKRFKRPSSLNTHMNIH 280
                 6******************998 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 2.8e-05
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 + Cp+  C+ksF+ k+++lrH k h
  CCD22908.1 286 YVCPYeeCRKSFNAKSNMLRHYKLH 310
                 79**********99999******99 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.2    0.0065        13      17      26 .]     260     269 ..     248     269 .. 0.88
   2 !   28.2   0.3   8.6e-10   1.7e-06       1      25 [.     272     298 ..     272     299 .. 0.95
   3 ?   -2.7   0.6         5     1e+04       3       9 ..     304     310 ..     302     312 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0065
   zf-H2C2_2  17 CplCdkaFkt 26 
                 C+ C+k+Fk+
  CCD22908.1 260 CKHCNKRFKR 269
                 ********96 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 8.6e-10
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 +L+ H+  Htg kpy Cp  +C+k+F+
  CCD22908.1 272 SLNTHMNIHTGNKPYVCPyeECRKSFN 298
                 599***************999*****6 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5
   zf-H2C2_2   3 rrHirkH 9  
                  rH + H
  CCD22908.1 304 LRHYKLH 310
                 5999999 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   1.4   4.8e-07   0.00096       3      22 ..     260     279 ..     257     281 .. 0.90
   2 !    7.9   0.2    0.0021       4.2       6      21 ..     293     308 ..     291     308 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.8e-07
      zf-met   3 CelCnvtfnsesqlksHlqG 22 
                 C+ Cn++f+ +s+l++H++ 
  CCD22908.1 260 CKHCNKRFKRPSSLNTHMNI 279
                 ******************96 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0021
      zf-met   6 CnvtfnsesqlksHlq 21 
                 C ++fn +s++  H++
  CCD22908.1 293 CRKSFNAKSNMLRHYK 308
                 **************96 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.8   1.1e-06    0.0022       4      22 ..     260     278 ..     257     278 .. 0.95
   2 ?    3.7   0.3     0.039        77       6      22 ..     292     308 ..     291     308 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-06
                  BTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHlk 22 
                  C++C+K Fk  ++l +H++
   CCD22908.1 260 CKHCNKRFKRPSSLNTHMN 278
                  *****************97 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.039
                  TTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   6 lCdKyFksenaldnHlk 22 
                  +C K F+  +++  H+k
   CCD22908.1 292 ECRKSFNAKSNMLRHYK 308
                  7**************97 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.5   2.5e-05     0.049       2      21 ..     258     277 ..     257     280 .. 0.91
   2 ?   -1.3   0.4       1.2   2.3e+03       6      12 ..     292     298 ..     286     298 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.5e-05
   zf-C2H2_6   2 heCsvCsksFpslqaLggHk 21 
                 + C+ C+k+F+   +L++H+
  CCD22908.1 258 YGCKHCNKRFKRPSSLNTHM 277
                 88*****************9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
   zf-C2H2_6   6 vCsksFp 12 
                 +C ksF+
  CCD22908.1 292 ECRKSFN 298
                 799*996 PP

>> zf-C2H2_8  C2H2-type zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3      0.14   2.9e+02      67      88 ..     258     279 ..     239     285 .. 0.84
   2 ?    9.8   3.5   0.00048      0.96      16      64 ..     268     314 ..     254     320 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.14
   zf-C2H2_8  67 fkcencllrfrthrslfkhlhv 88 
                 + c+ c  rf+   sl  h+ +
  CCD22908.1 258 YGCKHCNKRFKRPSSLNTHMNI 279
                 5799999999999999999876 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00048
   zf-C2H2_8  16 elaqhlrvhlsptqslegklfrcstascaetfpsmqelvahtklhykpn 64 
                 ++ + l++h++ +     k + c    c ++f +  +++ h klh+k n
  CCD22908.1 268 KRPSSLNTHMNIHT--GNKPYVCPYEECRKSFNAKSNMLRHYKLHFKLN 314
                 44556666666553..458899*************************88 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   0.00018      0.36      43      71 ..     251     278 ..     239     286 .. 0.89
   2 ?   -0.6   0.1      0.83   1.7e+03       5      26 ..     293     314 ..     284     319 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00018
   zf-C2H2_2  43 lrekieekleClyCekefkslealreHmk 71 
                 ++e+i + + C +C+k+fk  ++l++Hm+
  CCD22908.1 251 ISEEIAK-YGCKHCNKRFKRPSSLNTHMN 278
                 5677877.99******************7 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.83
   zf-C2H2_2   5 cekkskeveellehmskkhgff 26 
                 c+k+++  +++l+h++ +++++
  CCD22908.1 293 CRKSFNAKSNMLRHYKLHFKLN 314
                 6666666777777777777776 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.4   0.00056       1.1       2      26 .]     259     282 ..     258     282 .. 0.94
   2 ?    1.3   0.4      0.15     3e+02      13      24 ..     300     310 ..     298     312 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00056
   zf-H2C2_5   2 KCsqCDYstawksnLkRHlrrkHtg 26 
                  C +C+ + +++s+L+ H+  +Htg
  CCD22908.1 259 GCKHCNKRFKRPSSLNTHMN-IHTG 282
                 5*******************.***8 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.15
   zf-H2C2_5  13 ksnLkRHlrrkH 24 
                 ksn+ RH +  H
  CCD22908.1 300 KSNMLRHYK-LH 310
                 9******88.66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2857.49
//
Query:       CCD22909.1  [L=476]
Description: hypothetical protein NDAI_0A07550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-13   51.5   1.0    6.3e-10   39.4   0.2    2.8  2  Dfp1_Him1_M  Dfp1/Him1, central region


Domain annotation for each model (and alignments):
>> Dfp1_Him1_M  Dfp1/Him1, central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   3.9e-05      0.69       6      30 ..     199     224 ..     195     234 .. 0.80
   2 !   39.4   0.2   3.5e-14   6.3e-10      63     126 ..     236     302 ..     228     303 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.9e-05
  Dfp1_Him1_M   6 Arel.kmkiWsleKlqrvLknllekd 30 
                  A e+ ++k+W++eK+ r+ ++l+ + 
   CCD22909.1 199 AFENrSIKVWDYEKALRFFQKLEIDV 224
                  545548**************998765 PP

  == domain 2  score: 39.4 bits;  conditional E-value: 3.5e-14
  Dfp1_Him1_M  63 psdrdptakrkdlhyF..kgpyvlveDleqelrpiivreykk.eakkekdgewPvlrsttegrcpFv 126
                  p  rd + +++++ y+    py++++D++q ++p++  e+ + + ++ +  ++P+l+ +t g cpFv
   CCD22909.1 236 PLGRDNSDSKSEIFYLreFRPYLYIYDFQQIWAPLVKVEWDPkHFSNMNALPYPTLKYGTYGSCPFV 302
                  55699999999****966679*******************9978899999****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3590.40
//
Query:       CCD22910.1  [L=221]
Description: hypothetical protein NDAI_0A07560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-71  238.9   2.5    3.5e-71  238.4   2.5    1.2  1  SLM4      Protein SLM4


Domain annotation for each model (and alignments):
>> SLM4  Protein SLM4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.4   2.5     2e-75   3.5e-71       1     161 []       1     220 [.       1     220 [. 0.98

  Alignments for each domain:
  == domain 1  score: 238.4 bits;  conditional E-value: 2e-75
                 EE-HCSHHHHHHHHHS--BGGCSS-S--S-SEEEEEETTT--EEEEEE...................--S-S-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SLM4   1 mlqsknikkvLeqtLkpikikslslstsslqSslLlsaengsilsyan...................ssdkssleeestslnnLkmmsLlikdkwsede 80 
                 m++++ni++vLe+tLkpiki++l+++t++l+SslLlsa ng+i++yan                   +++++++++++t++nnLkmmsLlikdkwsede
  CCD22910.1   1 MIHADNIRQVLEATLKPIKIRTLPIETPCLKSSLLLSALNGAIMAYANadtdsgaifkddeddtqdtDEETQNTTSQATTMNNLKMMSLLIKDKWSEDE 99 
                 9*************************************************************999665559**************************** PP

                 T-SS---SSEEEEEEE............................................TTEEEEEEEEEETTEEEEEEE-TTSSEEEEEEEETTS-H CS
        SLM4  81 keeeeqktkscYkyelkekq........................................ksestriytyeiedlhacvaqipesdLlllliadkeyPy 139
                 k++e+q+t+scY+y+lkekq                                        ks+s+riyty++edlhacv++ip+sdLlll+iad++yPy
  CCD22910.1 100 KNPEAQTTNSCYIYDLKEKQnkdenitdqqekveqhqttdggsslqkptplptvegnvndKSSSIRIYTYAVEDLHACVTEIPRSDLLLLFIADNSYPY 198
                 ***********************************************************999999********************************** PP

                 HHHHHHHHHHHHTGGGGTTXXX CS
        SLM4 140 gllvlklkallealkelygYkl 161
                 gllvlk+kal++a+++lygYkl
  CCD22910.1 199 GLLVLKMKALVSAVTDLYGYKL 220
                 ********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1471  (0.0820458); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1731.93
//
Query:       CCD22911.1  [L=239]
Description: hypothetical protein NDAI_0A07570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-41  141.5   0.2    2.1e-41  140.9   0.2    1.3  1  UQ_con     Ubiquitin-conjugating enzyme
    0.00045   19.9   0.0     0.0012   18.5   0.0    1.8  1  Prok-E2_B  Prokaryotic E2 family B
  ------ inclusion threshold ------
      0.032   14.1   0.3      0.039   13.9   0.3    1.1  1  FAM131     Putative cell signalling


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.9   0.2   3.5e-45   2.1e-41       4     138 ..      15     163 ..      12     165 .. 0.90

  Alignments for each domain:
  == domain 1  score: 140.9 bits;  conditional E-value: 3.5e-45
                 HHHHHHH..HSTTTTEEEEEEETTEECEEEEE.EEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGS...........T CS
      UQ_con   4 kelkela..kkkpsgisaklvddenlfewkvl.ikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLk...........e 88 
                 ++++el+  k++ ++++ +l++d+n+f w++  i+  ed++Y+gg+Fk e++fp+++P++pP++kfv +i+HPnv+k+G++c++iL+           +
  CCD22911.1  15 RQYRELTdpKRAIPSFHIELENDSNIFVWHIGfIILNEDSIYNGGYFKSEMKFPSNFPYSPPHFKFVPPIYHPNVYKDGKLCISILHqsgdsmtsepdN 113
                 45553331277889999999999*******86255679*************************************************999999999887 PP

                 TT--TTSHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con  89 ekWspaltlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvke 138
                 e+Wsp++++esvl+si+sLl++pn +sp+n++a  +++k+ +eyk+kv+ 
  CCD22911.1 114 ETWSPVQSVESVLISIISLLEDPNISSPANVDASVEYRKNFQEYKRKVRL 163
                 77*********************************************975 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0     2e-07    0.0012      33     126 ..      52     159 ..      23     165 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2e-07
   Prok-E2_B  33 t....sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLCl.........lee.eldldewdpngsvadvleqlqqvLn.egisgde... 113
                 +    +gg ++ ++ +p +fp++pp+   + p      p +++ +g LC          + + e d + w p +sv  vl ++  +L+  +is+     
  CCD22911.1  52 EdsiyNGGYFKSEMKFPSNFPYSPPHFKFVPPI---YHPNVYK-DGKLCIsilhqsgdsM-TsEPDNETWSPVQSVESVLISIISLLEdPNISSPAnvd 145
                 144447999999999**************9999...5688888.9****74332222222.33678899*******************9******9999 PP

   Prok-E2_B 114 .daefagEfqsYwe 126
                  + e ++ fq+Y  
  CCD22911.1 146 aSVEYRKNFQEYKR 159
                 99999999999975 PP

>> FAM131  Putative cell signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.3   6.5e-06     0.039     159     253 ..     103     200 ..      84     232 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.5e-06
      FAM131 159 glrqgsvesesdssqtvgspdtlcsslcsLiedgllaspaelaakllg.qggee..llaklqrppsresafrslgkleaedslysvslsesllspaee 253
                 +  + ++e+++++ + v+s +++  s+ sL ed  ++spa++ a++   ++++e   + +lq   s++   + +   ++++s y +++ + l+   +e
  CCD22911.1 103 SGDSMTSEPDNETWSPVQSVESVLISIISLLEDPNISSPANVDASVEYrKNFQEykRKVRLQVERSKQDIPEGFIMPTSTSSAYVSKKNDYLMQKLNE 200
                 4455678999999999**************************99987668999944445666666776666666666677777777777666654333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 1973.84
//
Query:       CCD22912.1  [L=421]
Description: hypothetical protein NDAI_0A07580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-07   29.2   6.4        0.3   11.2   0.3    4.7  3  Recep_L_domain  Receptor L domain
    0.00085   18.9   1.4     0.0038   16.7   0.2    2.2  2  LRR_9           Leucine-rich repeat
  ------ inclusion threshold ------
       0.53   10.8  11.7        8.1    7.0   0.1    4.6  6  LRR_4           Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> Recep_L_domain  Receptor L domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   1.4   6.2e-05      0.37       1      60 [.      48     124 ..      48     184 .. 0.54
   2 !   11.2   0.3     5e-05       0.3      51      99 ..     235     282 ..     181     286 .. 0.77
   3 !    5.7   0.0    0.0025        15       5      58 ..     270     318 ..     268     339 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.2e-05
                     TESEEESBEEEECCHCTSB.................GGGGGGGGG--EESS-EEEESET-SSEGCGTT--EEESSSS CS
  Recep_L_domain   1 nCtvieGnLeitltsenee.................eellsflsnveeitGyllikntnlkslsflenLrvIrgrel 60 
                     +C+++ GnL+it +  + +                 +    + +++++itG l+++  ++ +   + +L  + + +l
      CCD22912.1  48 GCETLVGNLTITGELGSAAianvkeldgsltinnatSLGAFSADSIQKITGALTLEGLTILDSASFGSLAQVGSITL 124
                     69999999999999888334444444444444443222223344555555555555555555555555555554444 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 5e-05
                     T--EEESSSSBTTTEEEEEES-TT-SBEE-TTTSEESSSEEEEESETTS CS
  Recep_L_domain  51 nLrvIrgrelfeskyalaildnknleeLglpslkeitsgsvviskNpkL 99 
                     + ++I  ++l     ++++++n++l+ L+ ++l+ +  g++v+ +N +L
      CCD22912.1 235 SIESIDLSKLTTVGQTFSVVSNDELTTLKCSNLTSVG-GGLVVANNTDL 282
                     46777777887778899***************99776.57888889887 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0025
                     EESBEEEECCHCTSBGGGGGGGGG--EESS-EEEESET-SSEGCGTT--EEESS CS
  Recep_L_domain   5 ieGnLeitltseneeeellsflsnveeitGyllikntnlkslsflenLrvIrgr 58 
                     + G L +  ++     + ++ l+n+ ++ G + ++ + ++ l+ l++L+++rg 
      CCD22912.1 270 VGGGLVVANNTDL---KIINGLKNLATVGGAIVVTGN-FTALD-LSSLKSVRGG 318
                     4455555544444...566777777777777777777.55555.5666666665 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   6.4e-07    0.0038      31      79 ..     127     175 ..     121     195 .. 0.86
   2 ?    0.2   0.0     0.078   4.7e+02      66      99 ..     271     304 ..     237     316 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.4e-07
       LRR_9  31 ipvienlGatldqfdtidlsdndirkldgfPllkrlktlllnnnrivri 79 
                 +p i+ + + l   d i +sd  +  +dgf  lk+  ++ +nnnr +  
  CCD22912.1 127 LPAITTFSSNLQNADDILISDTTLESVDGFSTLKKCSVININNNRYLTS 175
                 6889999999***********************************7654 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.078
       LRR_9  66 lktlllnnnrivriaegleevlPnleelvltnne 99 
                    l+++nn  ++i +gl++      ++v+t+n 
  CCD22912.1 271 GGGLVVANNTDLKIINGLKNLATVGGAIVVTGNF 304
                 4579999999999999999999888889988885 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5     9e+03      22      30 ..      67      77 ..      54      90 .. 0.57
   2 ?   -2.4   0.0       1.2   7.2e+03      19      29 ..     100     109 ..      91     134 .. 0.67
   3 ?    4.7   0.5    0.0074        44       8      40 ..     145     177 ..     142     184 .. 0.83
   4 ?    3.6   0.1     0.016        95      10      43 ..     208     242 ..     203     248 .. 0.67
   5 ?    7.0   0.1    0.0013       8.1       2      30 ..     258     288 ..     257     296 .. 0.82
   6 ?   -2.0   0.0      0.96   5.8e+03       6      18 ..     307     317 ..     303     337 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
                -TT--EEE..- CS
       LRR_4 22 lpnLkeLd..L 30
                + n keLd  L
  CCD22912.1 67 IANVKELDgsL 77
                66777777664 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                 HHH-TT--EEE CS
       LRR_4  19 leklpnLkeLd 29 
                 l  l  L+ Ld
  CCD22912.1 100 LT-LEGLTILD 109
                 55.66677766 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0074
                 --SS---E-S-HHH-TT--EEE-.-S-----GG CS
       LRR_4   8 LsnNqltdiplleklpnLkeLdLsgNnlitdld 40 
                 +s++ l ++++++ l++  ++++++N ++t+++
  CCD22912.1 145 ISDTTLESVDGFSTLKKCSVININNNRYLTSFE 177
                 67888999999888999999***9999999984 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.016
                 SS---E-S-HHH-TT--EEE..-.-.S-----GGGGX CS
       LRR_4  10 nNqltdiplleklpnLkeLd..Lsg.NnlitdldeLk 43 
                 n  l+d++  + + +L++++  L + Nn i+++d L+
  CCD22912.1 208 NITLRDVQKAS-FAKLQKVNasLGFiNNSIESID-LS 242
                 33666666666.8888888888544577888884.54 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0013
                 S--EEE--SS---E-S-.HH..H-TT--EEE.- CS
       LRR_4   2 nLevLdLsnNqltdipl.le..klpnLkeLd.L 30 
                  L++L +sn  lt++++ l   ++++Lk ++ L
  CCD22912.1 258 ELTTLKCSN--LTSVGGgLVvaNNTDLKIINgL 288
                 69*******..***9999555589999999865 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 0.96
                 EE--SS---E-S- CS
       LRR_4   6 LdLsnNqltdipl 18 
                 LdLs+  l+++ +
  CCD22912.1 307 LDLSS--LKSVRG 317
                 66666..665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1690  (0.0942607); expected 358.6 (0.02)
Passed bias filter:                      721  (0.0402142); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 2872.18
//
Query:       CCD22913.1  [L=1000]
Description: hypothetical protein NDAI_0A07590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-05   25.8   5.2    0.00013   22.4   0.0    3.2  3  PCI       PCI domain


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.3     0.003        54       3      55 ..     185     259 ..     183     270 .. 0.79
   2 !   22.4   0.0   7.4e-09   0.00013       5     101 ..     383     486 ..     379     490 .. 0.86
   3 ?   -2.2   0.1      0.33     6e+03      16      48 ..     551     581 ..     543     595 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.003
                 HHHHHHHHHHTSHHHHHHHHHHH......................HHHHHHHTTHHHHHHHHHHHHHHHHHHHHH CS
         PCI   3 ysdllkalrsgnlsgfseelkdl......................eeelladdglaqllesLekkvrerllrqvs 55 
                 ++ +lk+ r++++++  e+l+++                        +   d+  +q+  s++ +++++++r+v 
  CCD22913.1 185 MQFCLKHNRKNEFKRLAEMLRQHldaanyqqnksgsniidlndsaTLQRYLDQRFNQVTVSVKLELWHEAFRSVE 259
                 67789999***************9999999999998888888877555555677777888888888888888775 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 7.4e-09
                 HHHHHHHHTS.HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSH......HHHHHHHHHHHHTTSSSEEEET CS
         PCI   5 dllkalrsgn.lsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsv......devEkilvklIrdgeirakidq 96 
                 ++++ l+ +  +   +e l++l  +l  +++  q+++sL++ + ++ + + s  y+++++++l +l  l+        ++E+ l ++  d++++ +id 
  CCD22913.1 383 QFYELLEINYnVGTIKEDLAKLLPQLESKPYFKQYVQSLRDILVRKIFVSASTAYTTVKIDELYELATLPApfdltyWNLERALLEAAIDDYVSFSIDY 481
                 5555555555566667777888889999*************************************************99******************97 PP

                 TTTEE CS
         PCI  97 esgiv 101
                  +  +
  CCD22913.1 482 ATSSI 486
                 76655 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH CS
         PCI  16 sgfseelkdleeelladdglaqllesLekkvre 48 
                 ++ s +l ++  e+++++   + ++  ++++++
  CCD22913.1 551 AELSDLLHEV--ESFNEMSYMEKVKLARENLIK 581
                 4444444444..333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1000 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2729  (0.152212); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.28s 00:00:01.29 Elapsed: 00:00:00.45
# Mc/sec: 6701.00
//
Query:       CCD22914.1  [L=760]
Description: hypothetical protein NDAI_0A07600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-52  176.9   0.0    1.4e-37  129.1   0.0    2.5  2  AAA              ATPase family associated with various cellul
    7.2e-10   38.5   0.6    3.4e-09   36.4   0.1    2.2  2  CDC48_2          Cell division protein 48 (CDC48), domain 2
    1.1e-09   38.0   0.1    7.2e-09   35.3   0.1    2.3  2  AAA_lid_3        AAA+ lid domain
    1.3e-09   38.4   0.1     0.0005   20.4   0.1    3.2  2  AAA_22           AAA domain
    2.8e-09   37.6   0.1     0.0011   19.4   0.0    2.7  2  AAA_16           AAA ATPase domain
      1e-08   34.8   0.0    0.00059   19.2   0.0    2.3  2  TIP49            TIP49 P-loop domain
    1.5e-07   31.0   0.1     0.0019   17.6   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    2.4e-07   30.8   0.0     0.0027   17.7   0.0    2.8  2  AAA_5            AAA domain (dynein-related subfamily)
    4.8e-07   29.7   0.4      0.044   13.5   0.0    2.9  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    8.7e-07   29.2   0.0       0.03   14.5   0.0    3.2  2  AAA_33           AAA domain
    1.4e-06   28.4   0.0    5.1e-06   26.6   0.0    2.0  1  CDC48_N          Cell division protein 48 (CDC48), N-terminal
    4.6e-06   26.2   0.0     0.0053   16.2   0.0    2.4  2  PhoH             PhoH-like protein
    5.2e-06   26.3   0.1        0.1   12.3   0.0    2.8  2  AAA_24           AAA domain
    6.5e-06   26.0   0.0       0.11   12.2   0.0    2.5  2  IstB_IS21        IstB-like ATP binding protein
    1.6e-05   25.5   0.0       0.38   11.3   0.0    2.9  2  AAA_18           AAA domain
    1.8e-05   25.0   0.0       0.14   12.5   0.0    2.8  2  RNA_helicase     RNA helicase
      2e-05   24.8   0.0     0.0023   18.1   0.0    2.6  2  AAA_2            AAA domain (Cdc48 subfamily)
    3.1e-05   24.0   1.8      0.059   13.3   0.0    3.5  3  NACHT            NACHT domain
    3.4e-05   23.8   0.2       0.39   10.5   0.0    2.7  3  AAA_11           AAA domain
    3.6e-05   24.3   0.2      0.059   13.9   0.1    2.7  2  ABC_tran         ABC transporter
    0.00012   21.9   0.0        0.3   10.8   0.0    2.4  2  Sigma54_activat  Sigma-54 interaction domain
    0.00012   21.3   0.0      0.078   12.2   0.0    2.4  2  NB-ARC           NB-ARC domain
    0.00029   20.2   0.0       0.74    9.0   0.0    2.4  2  DUF2075          Uncharacterized conserved protein (DUF2075)
    0.00051   20.6   0.6       0.64   10.5   0.0    2.5  2  AAA_23           AAA domain
    0.00051   19.6   0.0       0.07   12.6   0.0    2.3  2  AAA_7            P-loop containing dynein motor region
     0.0009   19.0   0.1       0.88    9.2   0.0    2.3  2  AAA_30           AAA domain
      0.001   19.1   0.0        1.1    9.3   0.0    2.5  2  ResIII           Type III restriction enzyme, res subunit
     0.0012   18.8   0.0       0.58   10.2   0.0    2.6  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0013   18.1   0.5       0.28   10.5   0.1    2.6  2  ATPase           KaiC
     0.0016   18.3   0.0       0.27   11.1   0.0    2.4  2  AAA_3            ATPase family associated with various cellul
     0.0019   17.8   0.5        2.3    7.7   0.0    2.9  3  AAA_25           AAA domain
     0.0021   17.5   0.2        4.3    6.7   0.1    3.4  2  TniB             Bacterial TniB protein
     0.0028   18.0   0.1        1.2    9.4   0.1    2.6  2  AAA_19           AAA domain
     0.0028   18.1   0.0       0.62   10.5   0.0    2.6  2  AAA_17           AAA domain
     0.0045   16.8   0.0        1.5    8.6   0.0    2.8  3  Bac_DnaA         Bacterial dnaA  protein
     0.0052   17.1   0.0        4.3    7.6   0.0    2.3  2  AAA_28           AAA domain
     0.0064   16.4   0.2        2.5    8.0   0.0    3.1  3  ATPase_2         ATPase domain predominantly from Archaea
      0.007   15.5   0.0        3.1    6.8   0.0    2.3  2  Parvo_NS1        Parvovirus non-structural protein NS1
  ------ inclusion threshold ------
      0.021   14.1   0.0       0.64    9.3   0.0    2.3  2  Zeta_toxin       Zeta toxin
       0.03   14.0   0.2        2.5    7.9   0.0    2.6  2  AAA_29           P-loop containing region of AAA domain
      0.051   13.5   0.1        7.2    6.5   0.1    2.6  2  NTPase_1         NTPase
      0.055   13.4   0.1         14    5.6   0.0    2.8  2  Rad17            Rad17 P-loop domain
      0.059   12.4   0.0        8.7    5.3   0.0    2.4  2  T2SSE            Type II/IV secretion system protein
      0.083   12.7   0.3        7.7    6.3   0.0    2.9  3  CPT              Chloramphenicol phosphotransferase-like prot
       0.11   12.6   0.0       0.24   11.4   0.0    1.5  1  Vps4_C           Vps4 C terminal oligomerisation domain
       0.11   12.3   0.3         44    3.8   0.0    3.8  4  DEAD             DEAD/DEAH box helicase
       0.14   12.3   0.0         28    4.8   0.0    2.6  2  Sigma54_activ_2  Sigma-54 interaction domain
       0.14   11.7   0.3        3.5    7.2   0.0    2.8  2  cobW             CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.0   3.8e-40   1.4e-37       1     131 [.     279     419 ..     279     420 .. 0.93
   2 !   45.4   0.0   2.7e-14     1e-11       1     131 [.     562     691 ..     562     692 .. 0.83

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 3.8e-40
                 EEEESSTTSSHHHHHHHHHHHHT.HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHH..TTCCCHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg.vefleisgsellskyvgesekkirelfkeakeka.......kpsilfiDEidalaksr..sgseseeeervvnqL 89 
                 +llyGppGtGKTl+a+ + + l+  e   ++g+e+lskyvg se++ir+lfk+a+++        + +i+++DE+d+++k+r  +g+ ++++++vvnqL
  CCD22914.1 279 LLLYGPPGTGKTLIARKIGTMLNaKEPKIVNGPEILSKYVGSSEENIRNLFKDAEAEYrakgedsSLHIIIFDELDSVFKQRgsRGDGTGVGDNVVNQL 377
                 69********************9455799************************97766778899666***************988889*********** PP

                 HHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  90 lteldgvkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 l+++dgv++  ++++vig+tnr d +d allr gRf++++ei 
  CCD22914.1 378 LAKMDGVDQL-NNILVIGMTNRKDLIDIALLRpGRFEVQVEIH 419
                 *********7.66**************************9986 PP

  == domain 2  score: 45.4 bits;  conditional E-value: 2.7e-14
                 EEEESSTTSSHHHHHHHHHHHHTHEEEE.EETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefle.isgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                 +l++GppG GKT+la a+a +++++f++ is+ el  +   ++ + i  +f++a ++    il+iD ++ l+        +++++++++L  +l++   
  CCD22914.1 562 LLIHGPPGSGKTALAAAIALKSQFPFIRmISANELSGMSENAKISYIDSTFRDAYKSP-LNILVIDSLETLVDWV-PIGPRFSNNILQVLKVALKRKPP 658
                 699**********************965278888888899999999******998774.5***********9988.66788999999999999999999 PP

                 SSSTEEEEEEESSGGGSTHHHHSTTSSEEEETT CS
         AAA  99 keskvivigatnrpdkldpallrgRfdrkieie 131
                 ++++++++++t +++ l++  +++ fd +i ++
  CCD22914.1 659 QDRRLLILTTTSTYSVLQQMDILSCFDNEIAVP 691
                 777666666666666666655559**9999887 PP

>> CDC48_2  Cell division protein 48 (CDC48), domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1     9e-12   3.4e-09       1      55 [.     135     206 ..     135     211 .. 0.86
   2 ?   -0.5   0.0       2.9   1.1e+03       3      19 ..     247     263 ..     245     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 9e-12
                 ..SCCCCH.HHHCCCTTEEE-TTEEEEECCTCCCEEEEEEEECCCC................SCEEECTSCC CS
     CDC48_2   1 ridgdema.ylkrqFlgrpvtkGdlvvfefkgqeiklvVvstePkg................pvgitetTei 55 
                 ++d+de+a ++ + F+++++++ +++  +fkg  ++l+V+++++++                + + t +T+i
  CCD22914.1 135 PFDQDELAaHFVKCFESQIFSPTQYLILDFKGFFFDLKVRNVQAIDlgdvepgnalstgietKGILTKQTQI 206
                 79********************************************99777777666666655566666666 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.9
                 SCCCCHHHHCCCTTEEE CS
     CDC48_2   3 dgdemaylkrqFlgrpv 19 
                 d ++   ++r+F +r++
  CCD22914.1 247 DKEFTKIFRRAFASRIF 263
                 6676679********98 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   1.9e-11   7.2e-09       1      35 [.     446     480 ..     446     505 .. 0.78
   2 ?   -0.0   0.0       2.1     8e+02      24      44 ..     501     523 ..     493     524 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.9e-11
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgi 35 
                 dv+l+eLA++++++SGA+++ l++ A+  A+  + 
  CCD22914.1 446 DVNLAELAALSKNFSGAEIEGLVKSASSFAINKTV 480
                 9******************************8843 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 2.1
   AAA_lid_3  24 reAallAlrrgike..itmedfe 44 
                 re  l+Al++++++  i++ed++
  CCD22914.1 501 REDFLNALSEVTPAfgINEEDLK 523
                 778899*****996679999997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.3e-06    0.0005       8      70 ..     279     342 ..     274     402 .. 0.79
   2 !   13.7   0.0   0.00015     0.057       7      29 ..     561     583 ..     558     608 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.3e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.erpevv.fvtlpsstsskdllrellralglelka 70 
                 l+++G++GtGKT+ +r++   l++ ++++  ++pe++ ++  +s+++ ++l+++   ++  ++++
  CCD22914.1 279 LLLYGPPGTGKTLIARKIGTMLNA-KEPKIvNGPEILsKYVGSSEENIRNLFKDAEAEYRAKGED 342
                 799******************953.333338999999777777777*******999999988777 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 0.00015
      AAA_22   7 ilvvtGesGtGKTtllrrlleql 29 
                 +l+++G++G+GKT l++ ++ + 
  CCD22914.1 561 SLLIHGPPGSGKTALAAAIALKS 583
                 589*************9998775 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   5.4e-05      0.02      25      51 ..     277     303 ..     266     379 .. 0.81
   2 !   19.4   0.0   2.9e-06    0.0011      15      45 ..     547     580 ..     539     666 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.4e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd 51 
                   +ll+G++G+GK+ ++r++ + l+++
  CCD22914.1 277 KGLLLYGPPGTGKTLIARKIGTMLNAK 303
                 689***************998877766 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.9e-06
      AAA_16  15 alervrsgrp...elvllsGesGvGKsslvrell 45 
                 ++++vr+++     ++l++G++G+GK++l+ +++
  CCD22914.1 547 YVRQVRESDKsrlVSLLIHGPPGSGKTALAAAIA 580
                 56666666666679****************9886 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   9.7e-05     0.036      51     100 ..     277     325 ..     265     339 .. 0.84
   2 !   19.2   0.0   1.6e-06   0.00059      47     104 ..     556     613 ..     506     618 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevlt 100
                 +++Ll Gp+gtGkt +a  i   l+++ p  +++g e+ s  v  +e  +
  CCD22914.1 277 KGLLLYGPPGTGKTLIARKIGTMLNAKEP-KIVNGPEILSKYVGSSEENI 325
                 89***********************9998.5789****999988777544 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.6e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXX.XXXXXXXXXXXXXX CS
       TIP49  47 klaGravLlaGpsgtGktalaiaiskelgedvpfval.sgsevys.levkktevltqalr 104
                 k    ++L+ Gp+g+Gktala ai+  l ++ pf+ + s+ e+   +e  k   +  ++r
  CCD22914.1 556 KSRLVSLLIHGPPGSGKTALAAAIA--LKSQFPFIRMiSANELSGmSENAKISYIDSTFR 613
                 3333479*****************7..8899***97615556543235566666666666 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     5e-06    0.0019      24      50 ..     278     304 ..     269     327 .. 0.85
   2 !   10.9   0.0   0.00057      0.21      24      43 ..     561     580 ..     557     618 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5e-06
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllppls 50 
                    lll+GppG+GKt++a+++ ++l + +
    CCD22914.1 278 GLLLYGPPGTGKTLIARKIGTMLNAKE 304
                   59******************9997654 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00057
  Mg_chelatase  24 nlllvGppGsGKtmlakrlp 43 
                   +ll+ GppGsGKt la++++
    CCD22914.1 561 SLLIHGPPGSGKTALAAAIA 580
                   689************99764 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   7.2e-06    0.0027       2      34 ..     279     312 ..     278     359 .. 0.67
   2 !   10.2   0.0    0.0015      0.57       2      25 ..     562     585 ..     561     633 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.2e-06
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--T CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltr 34 
                 +lL GppGtgK+ +a+++  +l  +e  +v++++
  CCD22914.1 279 LLLYGPPGTGKTLIARKIGTMLnAKEPKIVNGPE 312
                 89********************555555555555 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0015
                 EEEE--SSSSHHHHHHHGGGGBS- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnr 25 
                 +l+ GppG+gK+ la  +a   + 
  CCD22914.1 562 LLIHGPPGSGKTALAAAIALKSQF 585
                 8999***********998765554 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   0.00019      0.07      35      69 ..     278     313 ..     270     319 .. 0.82
   2 !   13.5   0.0   0.00012     0.044      32      65 ..     558     592 ..     545     613 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00019
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvk.lkitsgPvl 69 
                  +llyGpPG Gkt +a+ i + l++k  ki  gP +
  CCD22914.1 278 GLLLYGPPGTGKTLIARKIGTMLNAKePKIVNGPEI 313
                 579****************99999752578888866 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 0.00012
      RuvB_N  32 aldhvllyGpPGlGkttlakiiakelgvk.lkits 65 
                  l  +l++GpPG Gkt+la+ ia + +   +++ s
  CCD22914.1 558 RLVSLLIHGPPGSGKTALAAAIALKSQFPfIRMIS 592
                 566789***************99776654245555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0015      0.57       3      52 ..     280     332 ..     279     347 .. 0.77
   2 !   14.5   0.0     8e-05      0.03       3      42 ..     563     604 ..     562     733 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0015
      AAA_33   3 llvGlpGsGKstlaerl...lkklgavllssdtlrrrlfgtdqqsktdytrvl 52 
                 ll G+pG+GK+  a+++   l++    +++ ++++++++g+ +++++++ + +
  CCD22914.1 280 LLYGPPGTGKTLIARKIgtmLNAKEPKIVNGPEILSKYVGSSEENIRNLFKDA 332
                 688*************8444444449999999999999998777777665544 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 8e-05
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdq 42 
                 l++G+pGsGK+ la  ++ k +  +++  s ++++ + ++ +
  CCD22914.1 563 LIHGPPGSGKTALAAAIALKSQfpFIRMISANELSGMSENAK 604
                 78**************99888778666555554444444433 PP

>> CDC48_N  Cell division protein 48 (CDC48), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.4e-08   5.1e-06       1      82 [.      30     103 ..      30     106 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 1.4e-08
                 CEEEECCS.S-CSSTTEEEE-HHHHHHHTS-TTSEEEEECCCCEEEEEEEBSTTST.TTTEEEE-HHHHHHHT--TTEEEEEEE CS
     CDC48_N   1 rLrVaeap.qedvgrgivridpedmeelglepgdvveiegkrkTvaivwpaepede.gkgiIrmdgvtRknagvsiGdkVtVrk 82 
                 rL+Va++p +  +  ++++++ +d+ +      +++ ++ +     +v++ +++ e  +g+I ++g++R++ g+s++++V+ r 
  CCD22914.1  30 RLQVANCPnNAYALANVAAVSASDFPN------NIYILVDNL----FVFTTKHSNEvPPGTIGFNGNQRTWGGWSLNQEVQCRA 103
                 79************************9......899999888....********999***********************9876 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0068       2.5      22      41 ..     279     298 ..     267     311 .. 0.80
   2 !   16.2   0.0   1.4e-05    0.0053      10     114 ..     545     655 ..     536     669 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0068
                 EEEE--TTSSTTHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalav 41 
                 +   Gp GtGKt++a  ++ 
  CCD22914.1 279 LLLYGPPGTGKTLIARKIGT 298
                 5678***********98875 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.4e-05
                 HHHHHHHHH-S.....EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T..T----SS---------.TTTHHHHHHHTTTS-TTCHHHHH CS
        PhoH  10 keylealkknd.....ivfaiGpaGtGKtylavalavealkkkkvkriiltrpavea..geelGflpgdleekvd.pylrplydaLkdllgaekvekll 100
                 ++y+++++++d      + + Gp G+GKt la a+a++  ++  + r+i +     +  + ++ + + + ++ ++ p    ++d+L++l++   +   +
  CCD22914.1 545 SRYVRQVRESDksrlvSLLIHGPPGSGKTALAAAIALK--SQFPFIRMISANELSGMseNAKISYIDSTFRDAYKsPLNILVIDSLETLVDWVPIGPRF 641
                 567777773333443234678********999887776..68899999999888754458899****99999887245556789**9999999999999 PP

                 HTTSEEEEEGGGGT CS
        PhoH 101 ekgkievaplaymR 114
                 +++ ++v+++a  R
  CCD22914.1 642 SNNILQVLKVALKR 655
                 99999999888766 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00027       0.1       5      23 ..     279     302 ..     276     361 .. 0.68
   2 !   11.0   0.0   0.00069      0.26       4      79 ..     561     633 ..     558     636 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00027
      AAA_24   5 iliyGpsgiGKTtlakel.....g 23 
                 +l+yGp+g+GKT +a+++      
  CCD22914.1 279 LLLYGPPGTGKTLIARKIgtmlnA 302
                 68**************99555553 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00069
      AAA_24   4 kiliyGpsgiGKTtlakel.....gpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDtidelee 79 
                 ++li Gp+g+GKT la+ +      p + +i  ++ +   +++k+ +i        + ++ +a ++++++lviD+++ l++
  CCD22914.1 561 SLLIHGPPGSGKTALAAAIalksqFPFIRMISANELSGMSENAKISYI--------DSTFRDAYKSPLNILVIDSLETLVD 633
                 689**************9988444444444555553334444444444........3344578888888899998888765 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00069      0.26      45      71 ..     274     300 ..     256     309 .. 0.85
   2 !   12.2   0.0    0.0003      0.11      49      70 ..     561     582 ..     550     656 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00069
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgvea 71 
                 ++ ++++l Gp+G+GK+ +a  +g+  
  CCD22914.1 274 SHVKGLLLYGPPGTGKTLIARKIGTML 300
                 5667899*************9999765 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.0003
   IstB_IS21  49 nivllGpsGvGKshlaialgve 70 
                 ++++ Gp+G GK+ la+a++ +
  CCD22914.1 561 SLLIHGPPGSGKTALAAAIALK 582
                 57899**************987 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0012      0.46       2      35 ..     280     332 ..     279     394 .. 0.74
   2 !   11.3   0.0     0.001      0.38       2      56 ..     563     612 ..     562     659 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0012
      AAA_18   2 lltGtpGvGKttlakeLskrlgf...................gvnlrdvaken 35 
                 ll G+pG+GKt +a+ +  +l+                     +n+r ++k+ 
  CCD22914.1 280 LLYGPPGTGKTLIARKIGTMLNAkepkivngpeilskyvgssEENIRNLFKDA 332
                 689**************888755666656666555555555555555555544 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.001
      AAA_18   2 lltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedk 56 
                 l+ G+pG+GKt la +++ +    +  + +++ n+l+ + +++   +   +d  +
  CCD22914.1 563 LIHGPPGSGKTALAAAIALKS--QFPFIRMISANELSGMSENA---KISYIDSTF 612
                 689**************8776..78888888888888888777...444444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00038      0.14       2      26 ..     280     304 ..     279     342 .. 0.76
   2 !    9.5   0.0    0.0034       1.3       2      27 ..     563     598 ..     562     632 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00038
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   +lyGp+g+GK+++a+++ + l  k 
    CCD22914.1 280 LLYGPPGTGKTLIARKIGTMLNAKE 304
                   79**************888877433 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0034
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl............k 27 
                   +++Gp+g GK+ la  +a + +  +            +
    CCD22914.1 563 LIHGPPGSGKTALAAAIALKSQ--FpfirmisanelsG 598
                   79*************9765544..22244445555332 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   6.2e-06    0.0023       6     105 ..     279     383 ..     275     397 .. 0.69
   2 ?    3.9   0.0      0.14        53       3      28 ..     559     584 ..     557     613 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 6.2e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---...----THHHHHHHHHTTT.-HHHHTTS...EEEEETGGG----...---------HH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle...eeevehlvsrligappg.yvgaeegG...ivllDEidKihpk...essgadvSreg 94 
                 +ll gp g+Gkt++a+++  +l++   k+  +++  e+l    +  +e+ + +l   +++ y ++ e+    i+ +DE+d + ++   +  g    +++
  CCD22914.1 279 LLLYGPPGTGKTLIARKIGTMLNA---KEPKIVNGPEILSkyvG-SSEENIRNLFKDAEAeYRAKGEDSslhIIIFDELDSVFKQrgsRGDGTG-VGDN 372
                 5789******************95...34444444444443533.555555555554444044455555899************9642222222.3567 PP

                 HHHHHHHHHH- CS
       AAA_2  95 VqrdLLqileg 105
                 V++ LL  ++g
  CCD22914.1 373 VVNQLLAKMDG 383
                 88888876665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.14
                 ---EEEE--TTSSHHHHHHHHHHHTT CS
       AAA_2   3 iisilllgptgvGktelakalaellf 28 
                 ++s+l+ gp g+Gkt la a+a   +
  CCD22914.1 559 LVSLLIHGPPGSGKTALAAAIALKSQ 584
                 6899************9999886555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1      0.01       3.9       3      27 ..     279     303 ..     277     311 .. 0.84
   2 !   13.3   0.0   0.00016     0.059       3      23 ..     562     582 ..     561     585 .. 0.91
   3 ?   -0.3   0.0       2.4   8.9e+02      85     133 ..     623     673 ..     592     700 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.01
                 EEEEC-TTTCHHHHHHHHHHHHCTS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaeg 27 
                 ++l G++G GKT  ++k+ + + ++
  CCD22914.1 279 LLLYGPPGTGKTLIARKIGTMLNAK 303
                 5899**************8777665 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00016
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 ++++G++GsGKT+L++ +al+
  CCD22914.1 562 LLIHGPPGSGKTALAAAIALK 582
                 689***************976 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 2.4
                 EEEE-STT-SS-TCH...........HHHHHCTTTTT--EEEEEEECCCHH CS
       NACHT  85 lilDglDelvtdlgq..kekqpvrtlLselirkkllpeasllltvrpralr 133
                 l++D+l+ lv+  +      +++ ++L+  +++k ++  +ll+ +++++ +
  CCD22914.1 623 LVIDSLETLVDWVPIgpRFSNNILQVLKVALKRKPPQDRRLLILTTTSTYS 673
                 888999988876555556667777888888888777777777766666554 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0015      0.57      20      57 ..     279     313 ..     269     343 .. 0.74
   2 !   10.5   0.0     0.001      0.39      19      39 ..     561     581 ..     545     607 .. 0.72
   3 ?   -2.0   0.0       6.6   2.5e+03     188     224 ..     670     705 ..     640     707 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0015
      AAA_11  20 tliqGPPGtgKTktivellsqllsrrkseeeksakpri 57 
                  l+ GPPGtgKT    ++  +l+    +e +  ++p+i
  CCD22914.1 279 LLLYGPPGTGKTLIARKIGTMLNA---KEPKIVNGPEI 313
                 5899********999998888843...23344444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.001
      AAA_11  19 itliqGPPGtgKTktivells 39 
                   li+GPPG+gKT   +++  
  CCD22914.1 561 SLLIHGPPGSGKTALAAAIAL 581
                 469**********76665544 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 6.6
      AAA_11 188 leeevldeaeivltTlsgagsklleklakkfdvviID 224
                  + +vl++ +i  +  + ++ +++++l+ +f  v ID
  CCD22914.1 670 STYSVLQQMDILSCFDNEIAVPNMTTLD-EFNNVMID 705
                 4467888888888888888899999996.99999988 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   0.00016     0.059       7      97 ..     272     386 ..     270     403 .. 0.76
   2 ?    7.5   0.0     0.015       5.6      15      34 ..     563     582 ..     557     608 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00016
                 EEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........................x RF
    ABC_tran   7 klkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........................e 80 
                  +++ + + + G+ G+GK+ +++ +  +l+ +e +i ++g ++ ++   s++++i+ l+++++  ++ + +++                          
  CCD22914.1 272 GISHVKGLLLYGPPGTGKTLIARKIGTMLNAKEPKI-VNGPEILSKYVGSSEENIRNLFKDAEAEYRAKGEDSslhiiifdeldsvfkqrgsrgdgtgV 369
                 5666777889**************************.************************99999986655577777777666665554444444443 PP

                 HHTCHHHHHHHSTTGGT CS
                 xxxxxxxxxxxxxxxxx RF
    ABC_tran  81 sdeeiekalsklglkel 97 
                  d+ ++++l+k++ ++ 
  CCD22914.1 370 GDNVVNQLLAKMDGVDQ 386
                 33336666666655555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.015
                 EEEESTTSSHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagl 34 
                  i G+ G+GK+ L++++a +
  CCD22914.1 563 LIHGPPGSGKTALAAAIALK 582
                 699*************9865 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0042       1.6      25      50 ..     279     304 ..     267     313 .. 0.80
   2 !   10.8   0.0   0.00081       0.3      12      47 ..     548     584 ..     538     617 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0042
                      EEEECSTTSSHHHHHHHHHHHSTTTT CS
  Sigma54_activat  25 vlitGesGtGKellaraiheaskrke 50 
                      +l+ G  GtGK+l+ar+i +  + ke
       CCD22914.1 279 LLLYGPPGTGKTLIARKIGTMLNAKE 304
                      799*************9987666555 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00081
                      HHHHHHHCTSS.S-EEEECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat  12 leqikkvaktd.lsvlitGesGtGKellaraiheask 47 
                      ++q+++  k++ +s+li+G  G+GK+ la ai  +s+
       CCD22914.1 548 VRQVRESDKSRlVSLLIHGPPGSGKTALAAAIALKSQ 584
                      555555555556899****************987766 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.011       4.2      22      41 ..     278     297 ..     266     307 .. 0.78
   2 !   12.2   0.0   0.00021     0.078      13      43 ..     552     582 ..     545     592 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.011
                 EEEEEESTTSSHHHHHHHHC CS
      NB-ARC  22 vvalvGmgGvGKttlakqil 41 
                  + l+G +G GKt +a++i 
  CCD22914.1 278 GLLLYGPPGTGKTLIARKIG 297
                 4789*************995 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00021
                 HCTTTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  13 lekdelqslvvalvGmgGvGKttlakqilnk 43 
                  e+d++ ++ + ++G +G+GKt la+ i  k
  CCD22914.1 552 RESDKSRLVSLLIHGPPGSGKTALAAAIALK 582
                 467777888899**************99877 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0     0.002      0.74       5      96 ..     280     352 ..     277     386 .. 0.64
   2 !    8.7   0.0    0.0025      0.93       4      25 ..     562     583 ..     560     614 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.002
     DUF2075   5 lVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDE 96 
                 l  G +GtGKt+++ ++ + l      + +   +vN+p++l  +   ++++    +++ f++ ++            +k e+  ++++i+DE
  CCD22914.1 280 LLYGPPGTGKTLIARKIGTML------NAKEPKIVNGPEILSKYVGSSEEN----IRNLFKDAEAEYR---------AKGEDSSLHIIIFDE 352
                 6789************99999......333334567776654443333333....3344333333222.........233555566666666 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0025
     DUF2075   4 vlVtGvaGtGKtvvllnllael 25 
                 +l++G +G+GKt ++ +++ + 
  CCD22914.1 562 LLIHGPPGSGKTALAAAIALKS 583
                 69*************9999876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.3     0.012       4.3      23     131 ..     280     415 ..     275     511 .. 0.52
   2 !   10.5   0.0    0.0017      0.64      23      41 ..     563     581 ..     561     587 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.012
      AAA_23  23 lItGpNGaGKTTildAiklaLygetprlsrks..............grgfeksdveiese.gkvkayveltfenkdgry..........trsiererel 96 
                 l++Gp G+GKT i + i  +L  + p+  ++               ++             ++ +a ++ + e+    +          +  ++++ ++
  CCD22914.1 280 LLYGPPGTGKTLIARKIGTMLNAKEPKIVNGPeilskyvgsseeniRN-----------LfKDAEAEYRAKGED----SslhiiifdelDSVFKQRGSR 363
                 89**********************999999885554333222222111...........122222223322211....133334444332233333333 PP

      AAA_23  97 skkkgktt..............kkaklelleideleqfisellgskki...i 131
                  ++ g+                + ++   +++++++++i+  l +  +   +
  CCD22914.1 364 GDGTGVGDnvvnqllakmdgvdQLNNILVIGMTNRKDLIDIALLRPGRfevQ 415
                 3333333311111111111111223333333344444444444333333222 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0017
      AAA_23  23 lItGpNGaGKTTildAikl 41 
                 lI+Gp G+GKT++  Ai l
  CCD22914.1 563 LIHGPPGSGKTALAAAIAL 581
                 8***************975 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00019      0.07      28      60 ..     271     303 ..     265     312 .. 0.82
   2 ?    4.4   0.0     0.065        24      35      54 ..     561     581 ..     555     609 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00019
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkldke 60 
                 l +++ k +ll+Gp GtGKt+i++++ + l+ +
  CCD22914.1 271 LGISHVKGLLLYGPPGTGKTLIARKIGTMLNAK 303
                 56788999****************988877755 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.065
       AAA_7  35 pvllvGptGtGKtviikd.ll 54 
                 ++l+ Gp G+GKt+++    l
  CCD22914.1 561 SLLIHGPPGSGKTALAAAiAL 581
                 6799**********9988444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0024      0.88      21      49 ..     279     307 ..     266     322 .. 0.84
   2 !    7.3   0.0    0.0093       3.5      20      39 ..     561     580 ..     546     584 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0024
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrv 49 
                  +l Gp+GtGKt + +++  +++a++ ++
  CCD22914.1 279 LLLYGPPGTGKTLIARKIGTMLNAKEPKI 307
                 5789**************99999886555 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0093
      AAA_30  20 vavltGpAGtGKttalkalr 39 
                   +++Gp+G+GKt + +a++
  CCD22914.1 561 SLLIHGPPGSGKTALAAAIA 580
                 45799********9988875 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0028       1.1      16      96 ..     268     343 ..     256     388 .. 0.79
   2 ?    7.0   0.0     0.014       5.2      22      46 ..     557     581 ..     531     585 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0028
                 T......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B-- CS
      ResIII  16 leklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka 96 
                 +ekl + + k +l+  + GtGKTl+a k+   l  k+++     +v++ ++l++     ++ + + +k+++ +++ +++++
  CCD22914.1 268 IEKLGISHVKGLLLYGPPGTGKTLIARKIGTMLNAKEPK-----IVNGPEILSKYVGSSEENIRNLFKDAEAEYRAKGEDS 343
                 5666667778889999**********9999999998775.....8999999999998888888888877777777777666 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.014
                 .TTSEEEEEESTTSTHHHHHHHHHH CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklie 46 
                  r   +li+ + G+GKT +aa+++ 
  CCD22914.1 557 SRLVSLLIHGPPGSGKTALAAAIAL 581
                 3344789*************99976 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0015      0.58      19      49 ..     276     309 ..     248     329 .. 0.75
   2 ?    5.8   0.0     0.036        13      21      42 ..     559     582 ..     535     592 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0015
                 TEEEEEEESTTSSHHHHHHHHHHHTT--...--- CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve...evk 49 
                  + +lL+G+ G+GKT ++r++   l+ +    v+
  CCD22914.1 276 VKGLLLYGPPGTGKTLIARKIGTMLNAKepkIVN 309
                 3349******************999887553355 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.036
                 E..EEEEESTTSSHHHHHHHHHHH CS
        TsaE  21 v..ilLeGdLGaGKTtlvrglaka 42 
                 +  +l++G+ G+GKT+l+ ++a +
  CCD22914.1 559 LvsLLIHGPPGSGKTALAAAIALK 582
                 145899************999865 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   0.00075      0.28       5      37 ..     243     294 ..     240     297 .. 0.76
   2 ?    4.9   0.0     0.039        15      21      40 ..     561     580 ..     557     585 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00075
      ATPase   5 IeglDeilk...................gGipegrvvlitGepGtGKtifal 37 
                 + glD+ ++                    Gi + +  l++G pGtGKt++a 
  CCD22914.1 243 VGGLDKEFTkifrrafasrifppsviekLGISHVKGLLLYGPPGTGKTLIAR 294
                 556666664466666666666666666689*******************986 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.039
      ATPase  21 vvlitGepGtGKtifalqFl 40 
                 + li G pG+GKt +a+  +
  CCD22914.1 561 SLLIHGPPGSGKTALAAAIA 580
                 579***********998655 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00072      0.27       2      41 ..     279     318 ..     278     359 .. 0.75
   2 ?    4.7   0.0     0.067        25       2      30 ..     562     590 ..     561     599 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00072
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdi 41 
                 +ll g PG++ktl++++++++l+++  +i   p++l   +
  CCD22914.1 279 LLLYGPPGTGKTLIARKIGTMLNAKEPKIVNGPEILSKYV 318
                 6899*************************99999997654 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.067
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 +l++g PG +kt l+ a+a + +  f r+
  CCD22914.1 562 LLIHGPPGSGKTALAAAIALKSQFPFIRM 590
                 699***************98888777776 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.012       4.4      37      50 ..     280     293 ..     256     305 .. 0.87
   2 ?   -1.9   0.0       5.6   2.1e+03     142     171 ..     342     376 ..     319     383 .. 0.64
   3 !    7.7   0.0    0.0062       2.3      36      55 ..     562     581 ..     553     584 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.012
      AAA_25  37 llaGapgtGKttla 50 
                 ll+G+pgtGKt +a
  CCD22914.1 280 LLYGPPGTGKTLIA 293
                 89*********998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5.6
      AAA_25 142 g..vrlvviDplsralgg..densnsdv.galvea 171
                 +  ++ +++D l++++    +  + + v + +v++
  CCD22914.1 342 DssLHIIIFDELDSVFKQrgSRGDGTGVgDNVVNQ 376
                 255999******99987753333334445666655 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0062
      AAA_25  36 allaGapgtGKttlaldlal 55 
                  l+ G+pg+GKt+la  +al
  CCD22914.1 562 LLIHGPPGSGKTALAAAIAL 581
                 5889***********99997 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1     0.012       4.3      33      58 ..     274     299 ..     266     403 .. 0.82
   2 ?    6.4   0.0     0.014       5.3      29      53 ..     553     577 ..     534     586 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.012
        TniB  33 krmpnlllvGdsnnGKtmivekFarl 58 
                 + ++ lll+G++ +GKt i++k   +
  CCD22914.1 274 SHVKGLLLYGPPGTGKTLIARKIGTM 299
                 567899*************9997655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.014
        TniB  29 ypkrkrmpnlllvGdsnnGKtmive 53 
                   +++r  +ll++G++  GKt+++ 
  CCD22914.1 553 ESDKSRLVSLLIHGPPGSGKTALAA 577
                 567999***************9875 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1    0.0033       1.2      11      37 ..     277     303 ..     271     326 .. 0.84
   2 ?    5.7   0.0     0.048        18      13      28 ..     562     577 ..     551     584 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0033
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvel 37 
                 k ll+ ++pGtGKT + ++i ++l++ 
  CCD22914.1 277 KGLLLYGPPGTGKTLIARKIGTMLNAK 303
                 56899*********9998887776654 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.048
      AAA_19  13 llvtaGpGtGKTrvlk 28 
                 ll+ ++pG+GKT +  
  CCD22914.1 562 LLIHGPPGSGKTALAA 577
                 7899********8754 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.085        32       1      19 [.     282     300 ..     282     339 .. 0.83
   2 !   10.5   0.0    0.0017      0.62       2      26 ..     566     590 ..     565     604 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.085
                 EE-TTSSHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky 19 
                 +G+PG GK+ +++k+   +
  CCD22914.1 282 YGPPGTGKTLIARKIGTML 300
                 7***********9996555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0017
                 E-TTSSHHHHHHHHHHHHTEEEEEH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsa 26 
                 G+PGsGK+ +++ ++ k +f+++ +
  CCD22914.1 566 GPPGSGKTALAAAIALKSQFPFIRM 590
                 9*******************99865 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.063        24      33      67 ..     275     307 ..     262     353 .. 0.76
   2 ?   -2.0   0.0       6.9   2.6e+03     159     189 ..     414     446 ..     410     474 .. 0.57
   3 !    8.6   0.0    0.0039       1.5      24     108 ..     549     630 ..     542     642 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.063
                 .S--EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-E CS
    Bac_DnaA  33 kynPlfiygevGlGktHLlkaignevlenapelrv 67 
                 +   l++yg+ G Gkt + + ig  + +++p+  +
  CCD22914.1 275 HVKGLLLYGPPGTGKTLIARKIGTMLNAKEPK--I 307
                 56679***********9999999877666554..3 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 6.9
                 EEEE-----HHHHHHHHHHHHHHTT--..--TT CS
    Bac_DnaA 159 lvvdieppdletrlailkkkieaekle..vpee 189
                 ++v+i+ pd++ rl+i + + ++ + +  + ++
  CCD22914.1 414 VQVEIHLPDEKGRLQIFEIQTKKMRENnmMDKD 446
                 578899999999999876544433322222332 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0039
                 HHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHHT.T-SEEEEE-GGG CS
    Bac_DnaA  24 lkvaeapgkkynPlfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkeklr.kvDvLliDDiqf 108
                 ++v e  +++   l+i+g+ G Gkt L  ai+ +  +++p  r   ++a+e      +a  +   ++f++ ++  +++L+iD ++ 
  CCD22914.1 549 RQVRESDKSRLVSLLIHGPPGSGKTALAAAIALK--SQFPFIR--MISANELSGMSENAKISYIDSTFRDAYKsPLNILVIDSLET 630
                 6777778888999**************9999865..4455444..46666654444444334444567777774577888887665 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.016         6       4      35 ..     281     318 ..     279     343 .. 0.74
   2 ?    7.6   0.0     0.012       4.3       3      22 ..     563     582 ..     561     600 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.016
      AAA_28   4 itGgestGKTtlleaLaar....gypvv..pEaareil 35 
                 + G+++tGKT +++++  +    + ++v  pE+  +++
  CCD22914.1 281 LYGPPGTGKTLIARKIGTMlnakEPKIVngPEILSKYV 318
                 78***********9988443333666666777777776 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.012
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                  i G++++GKT l++a+a +
  CCD22914.1 563 LIHGPPGSGKTALAAAIALK 582
                 589************99943 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.15        57      24      44 ..     280     300 ..     274     309 .. 0.81
   2 ?   -0.2   0.1       2.1   7.9e+02     100     131 ..     323     357 ..     306     381 .. 0.66
   3 !    8.0   0.0    0.0066       2.5      23      46 ..     562     585 ..     546     671 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.15
    ATPase_2  24 fiYGpegsGKtaLlkeiienl 44 
                 ++YGp g GKt + ++i + l
  CCD22914.1 280 LLYGPPGTGKTLIARKIGTML 300
                 79*********9999986665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2.1
    ATPase_2 100 klvfkaielllekikkkgkk...iiiiiDelqkli 131
                 +++ + ++++ ++ + kg      iii+Del  + 
  CCD22914.1 323 ENIRNLFKDAEAEYRAKGEDsslHIIIFDELDSVF 357
                 3333333333334444444466699*****98765 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0066
    ATPase_2  23 yfiYGpegsGKtaLlkeiienled 46 
                 ++i Gp gsGKtaL   i+ +++ 
  CCD22914.1 562 LLIHGPPGSGKTALAAAIALKSQF 585
                 68************9988877654 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0083       3.1     117     136 ..     279     298 ..     275     306 .. 0.88
   2 ?    6.1   0.0     0.013         5     117     136 ..     562     581 ..     550     596 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0083
   Parvo_NS1 117 vwfyGpantGktnlaeaIak 136
                 +++yGp+ tGkt +a+ I +
  CCD22914.1 279 LLLYGPPGTGKTLIARKIGT 298
                 589************99855 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.013
   Parvo_NS1 117 vwfyGpantGktnlaeaIak 136
                 ++++Gp+  Gkt la+aIa 
  CCD22914.1 562 LLIHGPPGSGKTALAAAIAL 581
                 6789************9984 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.24        91      19      41 ..     279     301 ..     275     313 .. 0.83
   2 ?    9.3   0.0    0.0017      0.64      14      40 ..     557     583 ..     545     592 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.24
  Zeta_toxin  19 illgGqpGAGKselaellkdele 41 
                 +ll G pG GK+ +a+++ + l+
  CCD22914.1 279 LLLYGPPGTGKTLIARKIGTMLN 301
                 57889***********9987775 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0017
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdel 40 
                 +r +++l+ G pG+GK++la++++ + 
  CCD22914.1 557 SRLVSLLIHGPPGSGKTALAAAIALKS 583
                 6678899**************998776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1       0.2        75      21      36 ..     276     290 ..     270     304 .. 0.84
   2 ?    7.9   0.0    0.0068       2.5      24      42 ..     561     579 ..     543     581 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.2
      AAA_29  21 lkgatlltGpsGsGKS 36 
                 +kg  ll Gp G+GK+
  CCD22914.1 276 VKG-LLLYGPPGTGKT 290
                 457.9**********7 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0068
      AAA_29  24 atlltGpsGsGKSTllDAi 42 
                 + l+ Gp GsGK++l  Ai
  CCD22914.1 561 SLLIHGPPGSGKTALAAAI 579
                 589**********997665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1     0.019       7.2       3      27 ..     280     304 ..     278     311 .. 0.85
   2 ?    4.2   0.0     0.094        35       2      20 ..     562     580 ..     561     585 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.019
                 EEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellkssg 27 
                 ++ GppG+GKt + +k+  +l+ ++
  CCD22914.1 280 LLYGPPGTGKTLIARKIGTMLNAKE 304
                 678**************99998775 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.094
                 EEEE--TTSSHHHHHHHHH CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvl 20 
                 ++i GppG+GKt l   ++
  CCD22914.1 562 LLIHGPPGSGKTALAAAIA 580
                 6799*********998775 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.089        33      48      81 ..     279     312 ..     269     335 .. 0.79
   2 ?    5.6   0.0     0.037        14      39      63 ..     551     577 ..     546     607 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.089
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklrewlnpvs 81 
                 LL+ GP+G gk+ + + +   l  k  + +n+ +
  CCD22914.1 279 LLLYGPPGTGKTLIARKIGTMLNAKEPKIVNGPE 312
                 99**********9999999888888888887755 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.037
       Rad17  39 vLesrkkr..iLLisGPsGCgkstvvk 63 
                 v es k r   LLi GP+G gk+    
  CCD22914.1 551 VRESDKSRlvSLLIHGPPGSGKTALAA 577
                 556777775459**********97655 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.045        17     128     161 ..     275     308 ..     229     309 .. 0.87
   2 ?    5.3   0.0     0.023       8.7     130     149 ..     560     579 ..     534     591 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.045
       T2SSE 128 erglilvsGgTgsGKttllyallkeinksderiv 161
                 + + +l+ G+ g+GKt ++  + +++n+++ +iv
  CCD22914.1 275 HVKGLLLYGPPGTGKTLIARKIGTMLNAKEPKIV 308
                 55678999**************999999988887 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.023
       T2SSE 130 glilvsGgTgsGKttllyal 149
                  ++l+ G+ gsGKt l+ a+
  CCD22914.1 560 VSLLIHGPPGSGKTALAAAI 579
                 5799**********998765 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       3.4   1.3e+03       5      25 ..     280     300 ..     277     303 .. 0.86
   2 ?    6.3   0.0     0.021       7.7       5      33 ..     563     591 ..     559     619 .. 0.85
   3 ?    2.5   0.0       0.3   1.1e+02      81     121 ..     697     737 ..     687     748 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.4
                 EEEE-TTSSHHHHHHHHHHHS CS
         CPT   5 lLnGgsssGKsslaralqevl 25 
                 lL G + +GK+ +ar + ++l
  CCD22914.1 280 LLYGPPGTGKTLIARKIGTML 300
                 899************997776 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.021
                 EEEE-TTSSHHHHHHHHHHHSSS-EEEEE CS
         CPT   5 lLnGgsssGKsslaralqevldepwlhlg 33 
                 l++G + sGK++la a+   ++ p++ + 
  CCD22914.1 563 LIHGPPGSGKTALAAAIALKSQFPFIRMI 591
                 78****************99999999875 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.3
                 HTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HH CS
         CPT  81 raGnnvivDdvilekewlvdllrrllsgldvllVGvrcple 121
                 ++ nnv++D  +l+ e+ v+++++l + ++ + VG++  l 
  CCD22914.1 697 DEFNNVMIDSGFLDDEKRVKVINELAQVCPKFNVGIKKALT 737
                 6669********************************97765 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00064      0.24      19      54 ..     489     526 ..     482     527 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00064
      Vps4_C  19 ipsdkllePpvtlkDflkalkkarpt..VskeDLekhe 54 
                 + ++++ + +vt++Dfl+al+++ p   +++eDL+ + 
  CCD22914.1 489 LSTKDIAKLKVTREDFLNALSEVTPAfgINEEDLKSCV 526
                 455677799****************7668999999865 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         3   1.1e+03      17      31 ..     279     293 ..     270     308 .. 0.85
   2 ?    1.4   0.0      0.65   2.4e+02     119     137 ..     342     361 ..     296     396 .. 0.80
   3 ?    3.8   0.0      0.12        44      17      36 ..     562     581 ..     554     590 .. 0.85
   4 ?    1.3   0.0      0.69   2.6e+02     120     170 ..     618     671 ..     604     678 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3
                 EEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxx RF
        DEAD  17 vlvaaeTGsGKTlaf 31 
                 +l+ ++ G+GKTl++
  CCD22914.1 279 LLLYGPPGTGKTLIA 293
                 6788999*****986 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.65
                 CTTEEEEEEETHHHHHHT.T CS
                 xxxxxxxxxxxxxxxxxx.x RF
        DEAD 119 lsqvrflVlDEadrlldq.g 137
                  s++ ++++DE d + +q g
  CCD22914.1 342 DSSLHIIIFDELDSVFKQrG 361
                 578999********999852 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.12
                 EEEEESTTSSHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
        DEAD  17 vlvaaeTGsGKTlaflipvl 36 
                 +l++++ GsGKT+ ++  +l
  CCD22914.1 562 LLIHGPPGSGKTALAAAIAL 581
                 68999*******99877766 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.69
                 TTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
        DEAD 120 sqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgk.lqrqvivlSATlp 170
                 s +++lV+D   +l d+     +f n+il+ l+ + ++++ ++r++++l+ T +
  CCD22914.1 618 SPLNILVIDSLETLVDWvpIGPRFSNNILQVLKVALKRKPpQDRRLLILTTTST 671
                 557899***********8745566777777777777777767788999998877 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.094        35      23      41 ..     278     296 ..     266     315 .. 0.80
   2 ?    4.8   0.0     0.076        28      22      46 ..     560     584 ..     546     608 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.094
                      -EEEEEETT--HHHHHHCC CS
  Sigma54_activ_2  23 pvfltGekGsgkelvArlL 41 
                       ++l G++G+gk+l+Ar +
       CCD22914.1 278 GLLLYGPPGTGKTLIARKI 296
                      489*************976 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.076
                      S-EEEEEETT--HHHHHHCC--TTS CS
  Sigma54_activ_2  22 lpvfltGekGsgkelvArlLhknsg 46 
                      + +++ G++Gsgk+  A +++ +s+
       CCD22914.1 560 VSLLIHGPPGSGKTALAAAIALKSQ 584
                      6799*************99986654 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.76   2.8e+02       4      21 ..     280     297 ..     278     310 .. 0.73
   2 ?    7.2   0.0    0.0093       3.5       3      25 ..     562     584 ..     560     607 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.76
                 EEEESTTCCHHHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnhll 21 
                 +l G++G+GKT + +++ 
  CCD22914.1 280 LLYGPPGTGKTLIARKIG 297
                 688*******98776664 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0093
                 EEEEESTTCCHHHHHHHHHCT-- CS
        cobW   3 tvltGflGsGKTtLlnhllenra 25 
                 +++ G++GsGKT+L  ++  +++
  CCD22914.1 562 LLIHGPPGSGKTALAAAIALKSQ 584
                 5799**********988875544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        48  (0.00267723); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              48  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 5223.07
//
Query:       CCD22915.1  [L=195]
Description: hypothetical protein NDAI_0A07610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1572.11
//
Query:       CCD22916.1  [L=1297]
Description: hypothetical protein NDAI_0A07620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-15   55.9   0.4    1.3e-14   54.0   0.4    2.1  1  Bromodomain  Bromodomain
    1.2e-05   25.2   0.0      5e-05   23.2   0.0    2.1  1  Bromo_TP     Bromodomain associated


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.4   1.5e-18   1.3e-14       2      77 ..     446     522 ..     445     528 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1.5e-18
                  HHHHHHBHTTT.CGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSH CS
  Bromodomain   2 ekilsellehk.laepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsv 77 
                  ek++ el +    + pFl  v+++e p+y+ vikk +dL+t+ kkl+  +Y+s ++f +d+ l+++N+ +yn + s 
   CCD22916.1 446 EKVVLELRNYTeHSTPFLNKVSKREAPNYHLVIKKSMDLNTVLKKLKTFQYESKQEFVDDIMLIWKNCLTYNSDPSH 522
                  5555555555547889********************************************************97665 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   5.6e-09     5e-05       6      52 ..     940     986 ..     935     993 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5.6e-09
                 HHHHHHHHHHHHHHT-SEE-HHHHHHHHHHHHHHHHHHHHHHHHHHT CS
    Bromo_TP   6 sllkvvvsqileeaGfdsaeesaLEtLteiaqkYirelgeqaksfae 52 
                 ++l + vs++  + Gf+s++++aL+ Lteia +Y+++l +++k + e
  CCD22916.1 940 KVLHKNVSKLAMTNGFESSQPAALNMLTEIAGDYLSNLVKTIKIHHE 986
                 578899*********************************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2157  (0.120308); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.18u 0.33s 00:00:01.51 Elapsed: 00:00:00.51
# Mc/sec: 7632.32
//
Query:       CCD22917.1  [L=1041]
Description: hypothetical protein NDAI_0A07630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-48  164.3   0.1    2.6e-48  164.3   0.1    3.6  4  CBF         CBF/Mak21 family


Domain annotation for each model (and alignments):
>> CBF  CBF/Mak21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -16.7  16.6         1   1.8e+04      98      98 ..     146     146 ..      10     239 .. 0.65
   2 ?   -3.3   0.1      0.44   7.9e+03      88     108 ..     471     510 ..     464     558 .. 0.47
   3 !  164.3   0.1   1.5e-52   2.6e-48       1     170 []     598     767 ..     598     767 .. 0.88
   4 ?   -1.7   0.9      0.15   2.6e+03     109     130 ..     997    1018 ..     965    1037 .. 0.66

  Alignments for each domain:
  == domain 1  score: -16.7 bits;  conditional E-value: 1
         CBF  98 h 98 
                 +
  CCD22917.1 146 E 146
                 0 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.44
         CBF  88 llallsellk..hppklkalle.................e 108
                 +++l +++lk  +    ++l++                  
  CCD22917.1 471 VITLNQTILKrsEDDIANKLIKtyftlfekflintdkdhI 510
                 5666666666532222233444555555333332222220 PP

  == domain 3  score: 164.3 bits;  conditional E-value: 1.5e-52
         CBF   1 svqaLvllfqllskqkqsellsasdRFyraLYrkLldpelltsskralllnllykalkadk.pvkrvaAFvKRllqlalha.ppsfalgllallsellk 97 
                 svqaLvl++q++sk+ +     ++dR+yr+LY++L+d++l+ ssk++ +lnllyk+lk+dk +v+rv AFvKR+lq++ h+ +  ++ g+l+ll +l+k
  CCD22917.1 598 SVQALVLIHQVTSKA-EL----NNDRYYRTLYESLFDSRLVGSSKQGIYLNLLYKSLKEDKsNVERVEAFVKRILQVSSHWlNVGTITGFLFLLIQLVK 691
                 79************5.55....67*************************************9*****************999***************** PP

         CBF  98 hppklkalle.....ekfkdvkeeeeeekkeek...kkskaesgvYdptkrdpeysnaeasslwElsllakhfhPtValfA 170
                   p++++ll+     +     + +++++++e+k   k++k+++ +Yd +krdp+++na++sslwE+s + +h+hP+++++A
  CCD22917.1 692 IIPQIRNLLTntpidD-----QYQSDDDTEENKltgKNKKKTDTTYDGRKRDPKFANADKSSLWEISQFINHYHPSIQAYA 767
                 999*******665553.....3333333333334445556669***********************************987 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.15
         CBF  109 kfkdvkeeeeeekkeekkkska 130 
                  +f+d ++eeeee+ ++kk++k+
  CCD22917.1  997 SFSDSENEEEEEEASTKKQKKN 1018
                  4566666655555544433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1041 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3270  (0.182386); expected 358.6 (0.02)
Passed bias filter:                      714  (0.0398237); expected 358.6 (0.02)
Passed Vit filter:                       198  (0.0110436); expected 17.9 (0.001)
Passed Fwd filter:                       102  (0.00568911); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.79u 0.32s 00:00:02.11 Elapsed: 00:00:00.54
# Mc/sec: 5805.18
//
Query:       CCD22918.1  [L=890]
Description: hypothetical protein NDAI_0A07640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-25   88.3   0.3      1e-24   86.3   0.3    2.2  1  TEA       TEA/ATTS domain


Domain annotation for each model (and alignments):
>> TEA  TEA/ATTS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.3   5.8e-29     1e-24       2      68 .]     259     325 ..     258     325 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 5.8e-29
         TEA   2 ekvWppeledafleallliPpmgrrklklegklhgRnelIseyIlkktgkertrKQvsShiQvlkkt 68 
                 +++W++e+edaf+ al+ i ++g++k+k++++ +gRnelIs yI+++t + rt+KQ+sShiQvlkkt
  CCD22918.1 259 NEKWTKEVEDAFFVALRMITKNGTSKIKVKDRNYGRNELISLYIKHNTNEFRTKKQISSHIQVLKKT 325
                 589**************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3391  (0.189135); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.48
# Mc/sec: 5579.97
//
Query:       CCD22919.1  [L=975]
Description: hypothetical protein NDAI_0A07650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.4e-251  835.6   0.2     2e-251  835.0   0.2    1.2  1  FTHFS          Formate--tetrahydrofolate ligase
      1e-67  226.4   0.3      1e-67  226.4   0.3    2.0  2  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
    5.9e-35  120.0   0.5    1.7e-34  118.6   0.5    1.9  1  THF_DHG_CYH    Tetrahydrofolate dehydrogenase/cyclohydrolase,
  ------ inclusion threshold ------
      0.021   14.5   0.0       0.04   13.6   0.0    1.4  1  PBP-Tp47_a     Penicillin-binding protein Tp47 domain a
       0.16   11.1   0.0       0.35   10.0   0.0    1.5  1  2-ph_phosp     2-phosphosulpholactate phosphatase


Domain annotation for each model (and alignments):
>> FTHFS  Formate--tetrahydrofolate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  835.0   0.2  5.6e-255    2e-251       2     554 .]     346     975 .]     345     975 .] 0.99

  Alignments for each domain:
  == domain 1  score: 835.0 bits;  conditional E-value: 5.6e-255
                 -HHHHHHCS----HHHHHHCTT--CCCEEEBSTTEEEE-CHHCCTCTTTS-.-EEEEEEESS--TT--SHHHHHHHHHHHHH.HTT--EEEEE----SH CS
       FTHFS   2 sdieiaqeaklkpieeiaeklglkeeelelyGkykakvslkvlerllkekkkgklilvtaitPtplGeGKttttigLaqaln.klgkkavaalRepslG 99 
                 sdiei++++++k i ++ae+lg++ +e+elyG+ykak+s ++l+rl +++++gk+ilv++itPtplGeGK+ttt+gL+qal+ ++gk ++a++R+pslG
  CCD22919.1 346 SDIEISRNQDPKFIGNLAEELGIHPHEVELYGHYKAKISPDILDRL-HSNENGKYILVAGITPTPLGEGKSTTTMGLVQALTgHMGKPSIANIRQPSLG 443
                 8******************************************976.999********************************9**************** PP

                 HHHCST--SCEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTTT............................................. CS
       FTHFS 100 PvfgiKGgAaGGGysqvvPmedinLhltGDihaitaannllaalidnrifhene............................................. 153
                 P++giKGgAaGGGysqv+Pm+++n+hltGDihai aannllaa++d+r+fhe++                                             
  CCD22919.1 444 PTLGIKGGAAGGGYSQVIPMDEFNMHLTGDIHAIGAANNLLAAAVDTRMFHESTqkndstyynrlvprkngvrkftpsmlkrleklginktnpddltpe 542
                 *************************************************************************************************** PP

                 .......T-EECCCE---EEESS--GGGSSEEES-SSTTS---EEE-EEEGGGSHHHHHHHH-SSHHHHHHHHHC-EEEEETTS-EEECCCCT-HHHHH CS
       FTHFS 154 .......ldidpkkitwkrvlDvndraLRkivvglggkekgvpretgfditvasEimailaLakdledlkerlgrivvaytkdgepvtaedlkvagala 245
                        l+idp++it+krv+D+ndr+LR+i++g++++ekg++r+tgfditvasE+mailaL+kdl+d++er++r+v+++++++ep+taed+++aga++
  CCD22919.1 543 einkfarLNIDPDTITIKRVVDINDRMLRQITIGEAPTEKGFTRKTGFDITVASELMAILALSKDLKDMRERVSRVVIGFNHNKEPITAEDVHCAGAIC 641
                 *************************************************************************************************** PP

                 HHTTTTTS-EEEEETT--EEEE-----SSSS--B--HHHHHHHHHH...............-SEEEEEBSSSTTTHHHHHHHTHHHHHT---SEEEEEE CS
       FTHFS 246 vllkdaikPnlvqtlegtpalvHggPFAniahGcnsviatklalkl...............adyvvtEaGFgadlgaekfldikcrasglkpdavvlva 329
                 +llkdaikPnl+q+legtp+lvH+gPFAni++G++svia+++alkl               ++yv+tEaGF++++g e+f++ikcrasgl+pdavvlva
  CCD22919.1 642 ALLKDAIKPNLMQSLEGTPVLVHAGPFANISIGASSVIADRVALKLmgkrkslveqhkdseSGYVITEAGFDFTMGGERFFNIKCRASGLTPDAVVLVA 740
                 *************************************************************************************************** PP

                 EHHHHHHHTT.....--C...CCTTS--HHHHHHHHHHHHHHHHHHCTTT--EEEEEE--TT--HHHHHHHHHHH.HCTTSEEEEE-HHHHGGGGGHHH CS
       FTHFS 330 tvraLklhgg.....vek...eelkeenlealekGlanlekhienvkkfgvpvvvainkfktDteaelelvkela.eakavevalsevwakGgeGalel 419
                 tvraLk hgg     +++    e+++enle ++kG+anl k+i+nvk++gvpvvvain+f++Dt+ae+e+++++a ea+a++++ ++++++Gg+Gal+l
  CCD22919.1 741 TVRALKSHGGapdvkPGQslpIEYTTENLEFVSKGVANLCKQIANVKQYGVPVVVAINRFDSDTDAEVEIIRKAAmEAGAFDAVPTTHFQDGGRGALDL 839
                 **********7665533377889***************************************************99*********************** PP

                 HHHHHHHCC-.-.---SS-TTS-HHHHHHHHHHHTT--SEEEE-HHHHHHHHHHHHTTCTTS-EEEE--SSSSSSSTT--SS--S-EEEEEEEEEETTT CS
       FTHFS 420 aeavvealee.kefkflYdlelsieekietiakeiYgadgvelseeakkklkklekqgldklpvciaKtqySlsddpklkgapegftltvrevrlsaGa 517
                 a++v++++++ ++fk+lYd ++sie+k++ti++++Yg++++e+s+ea++k++ ++++g+++lp+ciaKtqySls+dpklkg+p+gft+++r++r+s+Ga
  CCD22919.1 840 AQSVIKVTNQpSNFKYLYDVNDSIENKLTTIVQKMYGGAKIEISPEAQQKIDLYKEKGFSNLPICIAKTQYSLSHDPKLKGVPTGFTFPIRDIRASIGA 938
                 *********87**************************************************************************************** PP

                 TEEEEESST--SS----SS-GGGC-EE-TTSEEES-- CS
       FTHFS 518 gfivalageimtmPGlpkkpaaekidvdeegkieGlf 554
                 g+++ala++i+t+PGl++ + +++++vde+g+i+Glf
  CCD22919.1 939 GYLYALAADIQTIPGLSTYAGYMNVEVDENGDIQGLF 975
                 ************************************8 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.4   0.3   2.8e-71     1e-67       1     159 [.     157     323 ..     157     324 .. 0.98
   2 ?   -2.2   0.3      0.62   2.2e+03     131     152 ..     403     424 ..     399     428 .. 0.82

  Alignments for each domain:
  == domain 1  score: 226.4 bits;  conditional E-value: 2.8e-71
                    SHHHHHHHHTT..--SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B- CS
  THF_DHG_CYH_C   1 hplnlgrlvkg..eeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelik 94 
                    h++n+g+l+k+  +++++pctp+g+++ll++++i+l+gk++vv+Grs+ivg p++ lL+++natVt+chs+tkdl++i+++ad++++a+G p+ +k
     CCD22919.1 157 HRYNAGELAKKggNPYFIPCTPHGCIKLLEDAKIDLKGKHAVVLGRSDIVGTPVSSLLKNANATVTICHSHTKDLPSILSTADVIIAACGMPQYVK 252
                    789*******98999********************************************************************************* PP

                    GGGS-TT-EEEE---EEC......-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHHHCH CS
  THF_DHG_CYH_C  95 aemvkegavviDvGinrv......ekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaakrq 159
                    +e++k+g v+iDvGin +      ++ +lvGDvdfe++k++as+itPvpgGVGpmTvaml++n+l+aak+q
     CCD22919.1 253 GEWLKKGVVIIDVGINYIpdstkkSGVRLVGDVDFESAKDKASFITPVPGGVGPMTVAMLVQNVLQAAKNQ 323
                    ********************99988889****************************************987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.62
                    SEE--TTTSCHHHHHHHHHHHH CS
  THF_DHG_CYH_C 131 saitPvpgGVGpmTvamllknt 152
                    + itP p G G+ T++m l + 
     CCD22919.1 403 AGITPTPLGEGKSTTTMGLVQA 424
                    569***********99977665 PP

>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.6   0.5   4.8e-38   1.7e-34       2     116 .]      38     154 ..      37     154 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.6 bits;  conditional E-value: 4.8e-38
                  --HHHHHHHHHHHHHHHHHHHHHH..T---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS-S CS
  THF_DHG_CYH   2 ldGkalakeireelkeeveklkek..gvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPlp 97 
                  l+G++la++ir++++ee++++k +   ++p+L +i++g++p+s++Yvr+k ka ++ G+++ + klpe++se  ll++i+++nedds++G+l+qlPlp
   CCD22919.1  38 LSGTKLAQDIRRKAHEEIQSIKTQfpTFNPTLKIIQIGEKPDSSTYVRMKLKASKDSGVNCIIEKLPESISEISLLNKIKQINEDDSIHGLLIQLPLP 135
                  89********************966699********************************************************************** PP

                  TTS-HHHHHCCS-GGGBTT CS
  THF_DHG_CYH  98 khidekaileaispeKDVD 116
                  +h++e++i++++s  KDVD
   CCD22919.1 136 HHLNETKITNSVSAFKDVD 154
                  ******************9 PP

>> PBP-Tp47_a  Penicillin-binding protein Tp47 domain a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.1e-05      0.04      29     133 ..     805     910 ..     793     916 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
  PBP-Tp47_a  29 assdekDsrgelDkGafDavtrattnhGlhrGsfqc.eaviydtdg.kayevsyweseekeavltdgskvtfnkgtitvadgktakldeyevkGlkYvP 125
                 ++  e  ++  ++ GafDav       G  rG+    ++vi+ t+  +++++ y  +++ e  lt   + ++  ++i ++ ++++k+d y+ kG+  +P
  CCD22919.1 805 DAEVEIIRKAAMEAGAFDAVPTTHFQDG-GRGALDLaQSVIKVTNQpSNFKYLYDVNDSIENKLTTIVQKMYGGAKIEISPEAQQKIDLYKEKGFSNLP 902
                 44455556778999******98777777.7999985145666555438999999999999999**999999**************************** PP

  PBP-Tp47_a 126 vkvktsdy 133
                 + +++ +y
  CCD22919.1 903 ICIAKTQY 910
                 **999988 PP

>> 2-ph_phosp  2-phosphosulpholactate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   9.8e-05      0.35     130     164 ..     610     668 ..     592     714 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.8e-05
                 HHTSS...EEEEE--BTTB--HHHHHHHHHHHHHHHH.....................H CS
  2-ph_phosp 130 elake...vvivcaGtegefsleDtlcAgalveelek.....................e 164
                 ++++    vvi   ++++ ++ eD+ cAga+++ l++                      
  CCD22919.1 610 DMRERvsrVVIGFNHNKEPITAEDVHCAGAICALLKDaikpnlmqslegtpvlvhagpF 668
                 33333334999999999******************997777776666666666666662 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (975 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 6606.30
//
Query:       CCD22920.1  [L=189]
Description: hypothetical protein NDAI_0A07660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-58  196.0   9.3      3e-58  196.0   9.3    1.6  2  Ribosomal_L19e  Ribosomal protein L19e
  ------ inclusion threshold ------
      0.092   13.1   1.4        0.6   10.5   0.1    2.1  2  NIBRIN_BRCT_II  Second BRCT domain on Nijmegen syndrome break
       0.54   10.8   6.3         25    5.5   6.5    2.6  2  TilS            TilS substrate binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L19e  Ribosomal protein L19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.0   9.3     5e-62     3e-58       1     143 [.       3     145 ..       3     146 .. 0.99
   2 ?   -2.9   1.2       1.1   6.3e+03      55      66 ..     162     174 ..     149     183 .. 0.43

  Alignments for each domain:
  == domain 1  score: 196.0 bits;  conditional E-value: 5e-62
                     -THHHHHHHHHHTTS-GGGEEE-GGGHHHHHH--SHHHHHHHHHTTSEEE-------THHHHHHHHHHHTT-S-SGGG--S-HHHHS-HHHHHHH CS
  Ribosomal_L19e   1 dlklqkrlaasvlkvGknrvwldpeeleeiaeAitredirklikdglIikkpkkgnsrararerkekkrkgrrrgsGkrkGtkeaRlpekelWik 95 
                     +l++qkrlaasv++vGk +vwldp+e++eia+A++r++irkl+k+g+I+kk+++++sr+r+r+++ +kr+gr++g+GkrkGt+eaRlp++++Wi+
      CCD22920.1   3 NLRTQKRLAASVIGVGKGKVWLDPNETTEIAQANSRNAIRKLVKNGTIVKKAVTVHSRSRTRAHALSKRNGRHTGYGKRKGTREARLPSQVVWIR 97 
                     689******************************************************************************************** PP

                     HHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHTT--SSHHHHHHHHT-X CS
  Ribosomal_L19e  96 riRalRrlLkelrekkkidkktYrelYrkakGgefknkavLkeyiekk 143
                     r+R+lRrlL ++r+++kidk+ Y+ lY++akG++fk+k++L e+i ++
      CCD22920.1  98 RLRVLRRLLAKYRDAGKIDKHLYHVLYKEAKGNAFKHKRALVEHIIQA 145
                     *********************************************987 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.1
                     ---THHH.HHHHH CS
  Ribosomal_L19e  55 gnsrara.rerke 66 
                      +s+ ra rer++
      CCD22920.1 162 RRSKNRAaRERRA 174
                     3333332122222 PP

>> NIBRIN_BRCT_II  Second BRCT domain on Nijmegen syndrome breakage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0001       0.6      24      76 ..      12      62 ..       5      85 .. 0.70
   2 ?    1.8   0.1      0.05     3e+02      79     105 ..     156     184 ..     114     186 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
  NIBRIN_BRCT_II 24 spvitnGgGkalleeeettaedlvryvkkvageedgselleskgvvvvrvrpk 76
                    ++vi  G+Gk++l ++ett+  +++   + a ++  ++ +  k+ v+v+ r+ 
      CCD22920.1 12 ASVIGVGKGKVWLDPNETTE--IAQANSRNAIRKLVKNGTIVKKAVTVHSRSR 62
                    67999************999..6666666666555555555566666665544 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.05
  NIBRIN_BRCT_II  79 steewiaevenelakk..gqrvIeesEil 105
                     ++e  +++ +n+ a++   qr+Ie++E l
      CCD22920.1 156 AEEADVRRSKNRAARErrAQRIIEKREAL 184
                     34444444444444333577888877765 PP

>> TilS  TilS substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   1.2e+04      21      43 ..      23      45 ..      22      48 .. 0.62
   2 ?    5.5   6.5    0.0041        25      32      65 ..     132     167 ..      91     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
                HHHHTTTT--HHHHHHH.HHHHH CS
        TilS 21 WLaqlglpmpsaahLeellrqll 43
                WL+ +   ++ +a  +  +r+l+
  CCD22920.1 23 WLDPNETTEIAQANSRNAIRKLV 45
                67666666666666666666665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0041
                 HHHHHH.HHHHH.H-S-SEEEEE-ST..EEEEETTE CS
        TilS  32 aahLeellrqlllaaedaqpqldlpg..evrRyrgr 65 
                  +h ++l++++++a++d+q + +l++   vrR+ +r
  CCD22920.1 132 FKHKRALVEHIIQAKADSQREKALAEeaDVRRSKNR 167
                 4566777******************5599*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1229  (0.0685482); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1402.86
//
Query:       CCD22921.1  [L=304]
Description: hypothetical protein NDAI_0A07670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-69  229.5   7.5    2.7e-25   88.1   0.1    3.0  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.12   11.5   0.1       0.37    9.9   0.1    1.7  2  Fuseless   Fuseless


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.1   4.6e-27   4.1e-23       3      94 ..       7     102 ..       5     105 .. 0.92
   2 !   88.1   0.1     3e-29   2.7e-25       4      95 ..     112     206 ..     109     208 .. 0.94
   3 !   63.8   0.6   1.2e-21   1.1e-17       4      95 ..     212     300 ..     210     302 .. 0.89

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 4.6e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                  +++ ++l+Gg+++ava++++ P+++vK  +q+q+++ k+ + ++    i+d++k++ k+eG+ +++rG+++n++r++p++al+f++ + +k ++ 
  CCD22921.1   7 SNFAIDFLMGGVSAAVAKTAASPIERVKLLIQNQNEMIKQGTLDHkysgIVDCFKRTAKQEGIISFWRGNTANVIRYFPTQALNFAFKDRIKLMFG 102
                 678999****************************999877776667788*******************************************9986 PP

  == domain 2  score: 88.1 bits;  conditional E-value: 3e-29
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS...HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa...ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +++ +l++Gg+ag ++ l+++ ld+++trl +++ksskk + ++   ++dv+kk++k++G++glyrG+lp++++++++++l+f+ly+++k lll+
  CCD22921.1 112 WFAGNLASGGMAGGLSLLFVYSLDFARTRLAADSKSSKKGGARQfngLIDVYKKTLKSDGVAGLYRGFLPSVVGIVVYRGLYFGLYDSVKPLLLT 206
                 7899******************************9999877777889*******************************************99975 PP

  == domain 3  score: 63.8 bits;  conditional E-value: 1.2e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 s+l+++l G++  ++a+++ +Pld+v+ r+++ ++++ k  +++++d++kki+  eG+++l++G+++n+lr +  +++  ++y++l+ +l+ 
  CCD22921.1 212 SFLASFLLGWVVTTGASTASYPLDTVRRRMMMTSGQAVK--YNGAFDCFKKIVAAEGVASLFKGCGANILRGVAGAGV-ISMYDQLQMILFG 300
                 7899****************************9999877..5569****************************66555.5689999888765 PP

>> Fuseless  Fuseless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.11   9.9e+02     253     271 ..      67      85 ..      33      93 .. 0.75
   2 ?    9.9   0.1   4.2e-05      0.37     182     235 ..     186     243 ..     179     279 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.11
    Fuseless 253 igvvnvWrGlwnlldlyll 271
                  g +++WrG    +  y+ 
  CCD22921.1  67 EGIISFWRGNTANVIRYFP 85 
                 5788888887666666665 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 4.2e-05
    Fuseless 182 vlvwrgv.willdlv...lfpedkelsalvslliGyvvvlllfllqaplrklskkltg 235
                 ++v+rg+ + l d v   l+  + e s l+s+l+G+vv+  +  +++pl ++ +++  
  CCD22921.1 186 IVVYRGLyFGLYDSVkplLLTGSLEGSFLASFLLGWVVTTGASTASYPLDTVRRRMMM 243
                 56777752467777777799********************************999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2196.86
//
Query:       CCD22922.1  [L=394]
Description: hypothetical protein NDAI_0A07680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-34  117.5   6.4    4.2e-11   42.5   0.1    3.5  3  KH_1      KH domain
    7.5e-09   35.3   5.0      0.047   13.5   0.1    4.0  4  KH_2      KH domain
    7.3e-08   32.2   0.1      0.022   14.6   0.0    3.5  3  KH_4      KH domain
    1.9e-06   27.8   7.6      0.011   15.9   0.1    4.1  3  KH_5      NusA-like KH domain
     0.0028   17.5   7.0       0.11   12.3   1.0    2.9  3  SLS       Mitochondrial inner-membrane-bound regulator


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.1   4.1e-13   1.5e-09       3      61 ..      73     130 ..      71     132 .. 0.85
   2 !   39.3   0.3   1.2e-13   4.2e-10       2      63 ..     180     241 ..     179     244 .. 0.85
   3 !   42.5   0.1   1.2e-14   4.2e-11       4      64 ..     283     346 ..     280     348 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 4.1e-13
                 EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT....T.-EEEEEESHHHHHHHH CS
        KH_1   3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg.sderevtisGspeavekAk 61 
                 r+l+  + + ++IGk+G++Ik+Ire+  +kI +    +++ +++r+++  Gs e+v kA+
  CCD22922.1  73 RFLLSLREAAALIGKKGATIKRIREDNDVKIAIN-A-SSPlCTDRILQCNGSIENVSKAI 130
                 56666677899**************99*****76.3.33448****************96 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 1.2e-13
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEESHHHHHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisGspeavekAkel 63 
                 +r+++ +s++g++IGk+G+ Ik+++e+  ++I+  k++ ++s er+++i+G ++ +++++  
  CCD22922.1 180 IRLILSTSMIGAVIGKNGNIIKKLMEDHDVRIVASKRQLPDSFERILEIQGLANEIAECLTV 241
                 688999********************99*****775444449*********77779999865 PP

  == domain 3  score: 42.5 bits;  conditional E-value: 1.2e-14
                 EEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT....T.-EEEEEE.SHHHHHHHHHHH CS
        KH_1   4 ilvPsslvgriIGkgGsnIkeIreetgakIkvpk.sedeg.sderevtisG.speavekAkeli 64 
                 + vP ++vg +IG +Gs+I+++r+ t++ I++++  ++   ++ + +ti G  +++v+ A+ ++
  CCD22922.1 283 VVVPEKYVGTLIGVKGSRINNLRSFTNTEINIVNfKDEATnENKSRFTIVGkYEKNVKTAESML 346
                 78**********************99*******85555559**********99999*****997 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0     4e-05      0.14      37      53 ..      82      98 ..      64     138 .. 0.89
   2 !   13.5   0.1   1.3e-05     0.047      25      53 ..     178     206 ..     161     217 .. 0.83
   3 !    9.1   0.0   0.00031       1.1      29      58 ..     283     312 ..     278     319 .. 0.86
   4 ?   -0.8   0.1      0.38   1.3e+03      39      59 ..     331     351 ..     322     365 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4e-05
                HHHHTGGGHHHHHHHHH CS
        KH_2 37 givIGkgGsnikkigke 53
                + +IGk+G++ik+i+++
  CCD22922.1 82 AALIGKKGATIKRIRED 98
                679************97 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.3e-05
                 CEEEEEEEESCHHHHHTGGGHHHHHHHHH CS
        KH_2  25 nrviiviresqpgivIGkgGsnikkigke 53 
                 + +++++ +s  g vIGk+G  ikk+ ++
  CCD22922.1 178 QSIRLILSTSMIGAVIGKNGNIIKKLMED 206
                 78999********************9765 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00031
                 EEEEESCHHHHHTGGGHHHHHHHHHHHHHH CS
        KH_2  29 iviresqpgivIGkgGsnikkigkelrkdi 58 
                 +v+ e   g +IG +Gs+i+++++  + +i
  CCD22922.1 283 VVVPEKYVGTLIGVKGSRINNLRSFTNTEI 312
                 68888899**************98777777 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.38
                 HHTGGGHHHHHHHHHHHHHHH CS
        KH_2  39 vIGkgGsnikkigkelrkdie 59 
                 ++Gk  +n+k+ ++ l +++e
  CCD22922.1 331 IVGKYEKNVKTAESMLIRNLE 351
                 567777777777776666654 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00094       3.4      22      55 ..      64      96 ..      51      97 .. 0.74
   2 !   14.6   0.0   6.3e-06     0.022      16      52 ..     166     201 ..     151     203 .. 0.77
   3 !    5.8   0.0    0.0035        13      33      60 ..     283     310 ..     266     318 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00094
        KH_4 22 eeeeeeeveielnvegedlGrvIGkrGrtldAlq 55
                   +e +ve +  ++  + + +IGk+G t++ ++
  CCD22922.1 64 K-VTEANVEHRFLLSLREAAALIGKKGATIKRIR 96
                4.3556677777778889999*********9776 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 6.3e-06
        KH_4  16 eevevteeeeeeeveielnvegedlGrvIGkrGrtld 52 
                 ++v+ +e+  e+ ++i+l ++++ +G vIGk+G +++
  CCD22922.1 166 KNVKTDED-LENVQSIRLILSTSMIGAVIGKNGNIIK 201
                 44555554.47899********************997 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0035
        KH_4  33 lnvegedlGrvIGkrGrtldAlqylvsa 60 
                 + v ++ +G +IG +G  ++ l+  ++ 
  CCD22922.1 283 VVVPEKYVGTLIGVKGSRINNLRSFTNT 310
                 55667789***************99986 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2     0.012        44      19      36 ..      81      98 ..      76     110 .. 0.84
   2 !    9.4   0.2    0.0003       1.1      17      36 ..     187     206 ..     180     217 .. 0.86
   3 !   15.9   0.1     3e-06     0.011      10      50 ..     286     320 ..     281     326 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.012
        KH_5 19 vGaivgkkGsrikavsse 36
                ++a++gkkG+ ik + ++
  CCD22922.1 81 AAALIGKKGATIKRIRED 98
                789***********9875 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0003
        KH_5  17 dpvGaivgkkGsrikavsse 36 
                 + +Ga++gk+G +ik+++++
  CCD22922.1 187 SMIGAVIGKNGNIIKKLMED 206
                 569*************9875 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 3e-06
        KH_5  10 kshnpnvdpvGaivgkkGsrikavsseLkgekidvvewseD 50 
                  ++      vG+++g kGsri+++ s + ++ i +v++++ 
  CCD22922.1 286 PEKY-----VGTLIGVKGSRINNLRS-FTNTEINIVNFKDE 320
                 5555.....9*************987.55********9986 PP

>> SLS  Mitochondrial inner-membrane-bound regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.2    0.0014       5.1      16      89 ..      61     135 ..      57     181 .. 0.65
   2 ?    0.4   0.1      0.13   4.7e+02      14      62 ..     167     214 ..     164     219 .. 0.85
   3 !   12.3   1.0     3e-05      0.11     118     187 ..     300     370 ..     264     388 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0014
         SLS  16 eiseevealgeleevklsprefflLltgngklLqnlsrihgakielnrse..nklritAtkstaeyieasineilk 89 
                 +i ++ ea  e + + ls re + L++++g  ++ +++++++ki++n s+  ++ ri   + ++e++ + i + lk
  CCD22922.1  61 TIPKVTEANVEHR-FLLSLREAAALIGKKGATIKRIREDNDVKIAINASSplCTDRILQCNGSIENVSKAIVDCLK 135
                 5555666666666.99999***************************988622344555555556666666666555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.13
         SLS  14 kleiseevealgeleevklsprefflLltgngklLqnlsrihgakieln 62 
                 +++ +e  e+++ ++ + ls+  +   +++ng+++++l ++h+++i ++
  CCD22922.1 167 NVKTDEDLENVQSIR-LILSTSMIGAVIGKNGNIIKKLMEDHDVRIVAS 214
                 678888888888888.999999999999999999999999999999665 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 3e-05
         SLS 118 lleelgrltntvievs..eddnnknskselkisalgedradlakRlLlwalgpsdsnkrlseallavtsssk 187
                  ++ l + tnt i ++  +d+ ++++ks ++i +  e+++++a+ +L++ l  +   k+ + +  +  ++s+
  CCD22922.1 300 RINNLRSFTNTEINIVnfKDEATNENKSRFTIVGKYEKNVKTAESMLIRNLEAERV-KSKNREARTGGKKSD 370
                 58899999******668655558899*************************55542.222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       940  (0.052429); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3038.07
//
Query:       CCD22923.1  [L=85]
Description: hypothetical protein NDAI_0A07690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       291  (0.0162307); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 628.28
//
Query:       CCD22924.1  [L=1001]
Description: hypothetical protein NDAI_0A07700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-32  113.5  37.0    2.6e-32  112.2  37.0    1.5  1  Anoctamin  Calcium-activated chloride channel
  ------ inclusion threshold ------
        2.7    8.0  18.3        6.5    6.7  15.5    2.8  2  Mucin      Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2  37.0   2.9e-36   2.6e-32      11     427 ..     139     600 ..     137     610 .. 0.75

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 2.9e-36
   Anoctamin  11 lYFawlgfytsallppavlGlllfl......yglati..tlfdneltvvfalfmviWatlflelW.krreaelaykWgtsdfeeeeeprpefrgelkre 100
                 ++ ++ ++y+++l  +av+G+++ +      y       +  ++++  ++ l ++iW++ f+  W ++++ ++++ ++t  +++ +   ++f    + +
  CCD22924.1 139 FFLSFYKYYIQSLKKLAVFGFIIRFilpnifY----DnkNPLTWQFNSLYQLGLFIWSIYFINSWiNKKQFHYKTLFNT--YQHIQ--SSSFISASSLN 229
                 56689*****************8886554432....02234455699******************44566777777888..66666..57788765545 PP

   Anoctamin 101 spvtgeeefyyppwkrrlfrllvslplvllliclavvgvlilrclalqelvssvke.....llsflptvlnlvlililnevykkla.iwltdlEnhrtq 193
                 +++t++ + ++      lf+ ++ +p++  ++++++++ + ++c+ ++++++++++     +++++pt+ln + ++i+  +y+++   +++++En+   
  CCD22924.1 230 QTITNNPHNHI----SILFKKCCFIPIL--ILFTILLISFQVICFCIEIYFTHIYNgpmksFVTLIPTILNSIGVPIIISLYNNIFvSRIIKWENNMSF 322
                 56766555555....4788899999988..4445555566666677888999999987666777**************999998874799*****9988 PP

   Anoctamin 194 seyekslilKvflfqfvnsylslfyiaFvkgkflkypgkylr..............rseecdeegcleelkeqLaiilvtkqllnnilevllPylkekl 278
                 ++   s   K f+++f+ +y++l+++ Fv+ +f  + +                  +  +   ++++ + ++q++++++t+q++ + le++lPyl + l
  CCD22924.1 323 ENELISKYEKNFILTFLINYVPLLITLFVYLPFGYKFNSM-IhsysffsfvpstspSALDIFFKINPLRYQKQFFYFIFTNQIITFSLENILPYLLRVL 420
                 77777777899********************875433333.258889*******88888899999******************************8877 PP

   Anoctamin 279 kkkkkesekdekeeeeskkltqaekeyelkkyedlfddYlemviqfGyvtlFsaafPlapllallnniieirldafklvt...............elrR 362
                 k+k +  +++++    sk+l++++ +  +++ +     Y+++++qfG++++Fs ++Plapll+++ n++  +++ +k+++                ++ 
  CCD22924.1 421 KAKMN--KTQSPITPTSKTLSHFKIDD-ISSSNPIDANYQKIILQFGFIIMFSIIWPLAPLLCYILNFVFYKIELWKFLNlykpstfqlnilsdyNTKL 516
                 65444..55555556677888888755.444443449*******************************************7777777777777542222 PP

   Anoctamin 363 .pvperaesiGiWqkilealgvlavitnalli.............altsdp......ek...dteqylsvlaarlafvvvlehvvlll 427
                        +si  W++il+++++++  +   l              +           +k   +t ++++  +++++++++ e++ ++ 
  CCD22924.1 517 sSSSSSSSSIEFWNNILSIVTIVGSTISLTLTsmyksshllslssS----FsspsmdSKlflSTPTNYKSGSTIILLLFITENLSVFA 600
                 22455679*****************999999966666666654442....04445552245645555556555555555577765443 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.096   8.6e+02      82     123 ..      45      86 ..      18      96 .. 0.70
   2 ?    6.7  15.5   0.00072       6.5      42     103 ..     893     950 ..     852     962 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.096
       Mucin  82 ttttttateaPsdavttaeaPtttttrapsrlrevdGslsss 123
                 ++ttt++t+   +a t  + P+ +t+ +  r+++   s+s  
  CCD22924.1  45 SSTTTSSTKNNYQAYTFIRLPNDGTGESLNRINKFVNSISHF 86 
                 345555556666677888888888888777777777776655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00072
       Mucin  42 qskltttttttkppttttttttasttittkttkattttttttttttateaPsdavttaeaPt 103
                 ++++ t++++ k +t++t+ tt +++    + k +tttt ++ + t+t a   av++ +a +
  CCD22924.1 893 NKRHLTPSISSKGTTASTVNTTKTSS----SKKPPTTTTIQSHSVTTTTAAVAAVAAGNADS 950
                 45566888888888888888755544....44555555555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2105  (0.117408); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.93u 0.29s 00:00:01.22 Elapsed: 00:00:00.47
# Mc/sec: 6370.25
//
Query:       CCD22925.1  [L=297]
Description: hypothetical protein NDAI_0A07710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-18   67.2   0.0      2e-18   66.8   0.0    1.1  1  Ala_racemase_N  Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   1.1e-22     2e-18      19     219 .]      73     289 ..      50     289 .. 0.85

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 1.1e-22
                     TTSEEEEE-HHHHHTTHHHHHHHHHHHTTESEEEESSHHHHHHHHHTTS.CSEEEEESC..S.TGGGHHHHHHTTEEEEESSHHHHHHHHHHHHH CS
  Ala_racemase_N  19 pgaklmavvKanayghgavevaralaeggadgfgvatleEalelreagi.tapilvleg..f.speelaalaeydltvtvdsleqlealaaaare 109
                     +++ l++v+K   +++  +++++  + + ++ fg+++++E+ e  +    + ++  ++g  + + ++la++ +  ++ t+dsl+++++l++ + +
      CCD22925.1  73 EHVLLLPVSKL--KPASDIKILYDTL-H-IKEFGENYVQELMEKSKLLPnDIKWHFIGGlqTnKCKDLAKIPNLYCVETIDSLKKVKKLNESRLK 163
                     367799*****..**********667.7.*************87777666778888888763478888888889********************* PP

                     ...TTS-EEEEEEBESSSS..SSSBSC.HHHHHHHHHHHHTTT......EEEEEEE-S-SST..TSTS.HHHHHHHHHHHHHHHHHHHTTGGGSE CS
  Ala_racemase_N 110 ...agkplrvhlkidtgmg..RlGftp.eeleellealaalpg......lrleglmtHfasa..depd.eeteaqlarfeealeelekaglrppv 189
                           p+++ ++i+t+ +  ++G++  +e+ e++e   +++g      l+l+glmt+ +     + d ++ ++++ ++++ +++++++   +  
      CCD22925.1 164 fseDADPINCYIQINTSNEeqKSGLHEeNEIFEIVEYFLNKDGkekplmLNLVGLMTIGSWNvsHQVDhDKDNEDFTALANWKSKIDSKFGTDLK 258
                     **99*************779*******9********8888544455679***********98553334567788************87668889* PP

                     EEEESHHHHHHSGGG.TTEEEESGGGGT-SS CS
  Ala_racemase_N 190 vslanSaaillaaah.fdmvRpGialyGlsp 219
                     +s+++Sa++ +a  + +++vR+G+ ++G +p
      CCD22925.1 259 LSMGMSADYKQAVRQgSTEVRIGTDIFGNRP 289
                     ************6345************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1235  (0.0688828); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2339.63
//
Query:       CCD22926.1  [L=622]
Description: hypothetical protein NDAI_0A07720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-29  103.4   0.0    2.9e-29  102.2   0.0    1.6  1  FAD_binding_1  FAD binding domain
    1.9e-27   96.3   0.0    3.3e-27   95.5   0.0    1.3  1  Flavodoxin_1   Flavodoxin
    9.9e-11   42.3   0.0    2.3e-10   41.1   0.0    1.7  1  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0   4.8e-33   2.9e-29      12     222 .]     228     449 ..     220     449 .. 0.88

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 4.8e-33
                    EEEEEEE---.-SS--EEEEEEE-TTB..T----TT-EEEE-----HHHHHHHHHHHT--T...T-EEEEEESSTT..S--SSSSSEEHHHHHHHT CS
  FAD_binding_1  12 kvlknreLtkpesernvihveldisds..glkYetGdhlgvypsNneelVeellellgldpk.adevvelkaldeesaekeprleptTlrqalkyy 104
                    kv kn+++t pe+ + v  + +  +d+  +  Y +Gd  ++y  N + +Ve++le      + ad++++  +  +++  +    +p T+r++lky+
     CCD22926.1 228 KVIKNERITDPEHFQDVRQFIFKNNDEsvNDIYYPGDTAAIYSYNTDLAVEQFLENQSHWLEvADKPLKFTNGIPSHLRDGGIVKPLTIRNLLKYH 323
                    7889999999999888888888888886777799*********************9888777699999999999889******************* PP

                    B--SS---HHHHHHHGGG-SS...........HHHHHHHHHHHH-HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S- CS
  FAD_binding_1 105 lditgppskqlleaLaefase...........eeekqkLekLssdegakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSss 189
                     di++ p++ ++ ++ +fa++           ++++ kL+  + de  +e+ +     +r++levl++f sv+lp + +l  lp +kpRyYSiSs 
     CCD22926.1 324 CDIMSIPRTSFFMKMWTFATDvtrmergeeqlNDQRDKLKEFAYDEDMQELYDYCNRPRRSILEVLDDFLSVRLPWKYMLDYLPIIKPRYYSISSG 419
                    *******************9844444333333345778888888888888888888999************************************9 PP

                    TTTTTTEEEEEEE--EE---SSS--EE-HHHHH CS
  FAD_binding_1 190 skvhpdevhltvvVveyetdgegrirkGvcsny 222
                    +   + +++ltv++v+y+t    +irkGvcs +
     CCD22926.1 420 PC--NPQIELTVAIVKYRT-ILRKIRKGVCSDF 449
                    95..678***********8.999********86 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   5.5e-31   3.3e-27       1     132 [.       9     138 ..       9     144 .. 0.94

  Alignments for each domain:
  == domain 1  score: 95.5 bits;  conditional E-value: 5.5e-31
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGH.HHHHHHHHHHCHHGCCSTTTTEEEEEEEEE CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppenge.sffqdllelkgdeledgdlsgvrfavfglG 96 
                   il+gSetGn++++A  l  +l++  f+ ++ s+s+yd  +++i + ++l + +sT+g+G++p n+   +f+++l+ k+ + +   ls v++ +fglG
    CCD22926.1   9 ILFGSETGNAQDFATILSHKLQRLHFSHTLSSFSEYD--PKDILSCKYLFLFCSTTGQGELPKNASdGKFWSFLKKKKLPAN--FLSHVNVTLFGLG 101
                   89***********************************..78***********************************986655..5************ PP

                   CTTSSSTTHHHHHHHHHHH.HTTCEEESSSEEEETTS CS
  Flavodoxin_1  97 dsayenFcaagkkldekle.elGaerllkllegdedn 132
                   ds+y++F++a++kl++++  +lGa+ ++  le+de+ 
    CCD22926.1 102 DSSYPKFNYAIRKLHQRIVvQLGAKEVFDRLEADEQS 138
                   ***************987526**************86 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   3.9e-14   2.3e-10       1     102 [.     480     578 ..     480     585 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 3.9e-14
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH....HSST CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrtee.dllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells....lkke 91 
                    ++++G+GiaP++sv++a + +      +++++G+r ++ d ly++ le++  + ++++++ +v sr+ +++   + +vqd l +   +    + k+
     CCD22926.1 480 LVSPGVGIAPLMSVVKANVSN-----DIHFFFGCRFKDkDYLYQDILEKW--NSENKIMLHPVFSRDRENS-PDTKYVQDVLWKLGQEmtdlIVKD 567
                    799****************97.....59*******8888***********..5566678999988888776.7899****99885555667989** PP

                    TEEEEEECSHH CS
  NAD_binding_1  92 ethvyvCGppg 102
                    ++++++CG+ g
     CCD22926.1 568 NALMLLCGASG 578
                    ********654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4619.01
//
Query:       CCD22927.1  [L=555]
Description: hypothetical protein NDAI_0A07730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-34  117.9  35.7    4.5e-34  117.9  35.7    1.9  2  MFS_1     Major Facilitator Superfamily
      1e-05   24.2   6.1    1.7e-05   23.5   6.1    1.2  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
      0.038   12.3  21.7     0.0052   15.1  11.7    3.5  3  OATP      Organic Anion Transporter Polypeptide (OATP) family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9  35.7   7.5e-38   4.5e-34       2     348 ..     118     497 ..     117     502 .. 0.81
   2 ?    1.4   2.6     0.019   1.2e+02       2      51 ..     487     538 ..     486     544 .. 0.80

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 7.5e-38
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsd..rfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGl 97 
                 +l+++++++++si++p     + +++++ + ++ l l+ly lg++++ +++++l++  ++Gr  ++ l++++f +   +++ + +++  l+v r+++G+
  CCD22927.1 118 MLLTAVTYMGSSIYTPGEE-QIRKEFHVGHVVATLNLSLYVLGYGLGPIVFSPLTEiaKIGRQQTYTLTFFCFTIL-QIGAATvHNIGGLIVIRFFTGI 214
                 78999*************9.8*********************************77668*****************.5555234**99*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 +++ ++++gaa iad++++e  +  ++++s+g+ +++i+gpllg+ ++ s gWr++f++l  +s+  +++  +++pe+  ++  ++ + +         
  CCD22927.1 215 FCSPALATGAATIADVVSPEIVPIFLAIWSIGAMVAPIIGPLLGATMVISKGWRWIFWLLLWMSAATLIILTFFFPETSANNILSRRASRIrnktgdks 313
                 *********************************************************************999999999999999988888899999999 PP

       MFS_1 189 ..........kgtgpaplvp....awkallkdpvlw..illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr. 270
                             t ++ l++    ++k++ k p ++   + +al+++  +f++++  +p+ ++  ++++ l+++gl++  ++++++i+++ +  ++++ 
  CCD22927.1 314 yytvqekldsDTTTERFLINtfyrPFKLIAKEPMILvlDVYLALCYG--AFYLFFEAFPIVFVGIYHFT-LIETGLAYFGFCVGCCIAFPALMVFLHKv 409
                 8888877766333333333378889********88653333444444..888899*****99*******.88888888777777777766666666665 PP

       MFS_1 271 .........lgrrrrlllallllllaalglallavtssavllll..vlvliGf.glgfvfpsllalasdlappeeagtasglfntagslg 348
                          + ++ +l+la+ +   +  +l+l++++ s+++++   + +++ +  + ++++++ +la+ +   ++++++++ ++++++  
  CCD22927.1 410 vrprfenntFTPEVFLILAMCVSWSLPTSLFLFGWAASTHWIVPiiAQIFFVLcVFNLFQCTFSYLAMAYP--KYTASVFAGNSLFRASF 497
                 44456666555577777777777777777777777766666555554444555578888999999999999..99999999988777644 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.019
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltl..yalgaavaslp 51 
                 + +  l  +++++++p++ +a+ ++l i++  +g+  +l  ++  a++a+++
  CCD22927.1 487 FAGNSLFRASFACAFPLFGQAMYNNLAIDGYPVGWGSSLigFFCMALAATPF 538
                 667778889999***********************88886566666666665 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   6.1   2.8e-09   1.7e-05      85     226 ..     154     298 ..     141     312 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.8e-09
       TRI12  85 tlwttgqavsilvmgrltd..rfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagas.plfvgelmsnktkflgllivsipvvvtsg 180
                 +l+ +g  +  +v+  lt+  ++gr+    lt     +  i  +t  ++  l+    + g+ + pa a+    + +++s     + l i si ++v   
  CCD22927.1 154 SLYVLGYGLGPIVFSPLTEiaKIGRQQTYTLTFFCFTILQIGAATVHNIGGLIVIRFFTGIFCSPALATgAATIADVVSPEIVPIFLAIWSIGAMVAPI 252
                 5677777777777788876447899999999999999999999999*******************977625789************************* PP

       TRI12 181 lspylgqrlaiqgswrwifyiyiitsaiavllivvwyypp.sfaqlh 226
                 ++p lg  + i   wrwif++ + +sa   l+i+ +++p  s +++ 
  CCD22927.1 253 IGPLLGATMVISKGWRWIFWLLLWMSAA-TLIILTFFFPEtSANNIL 298
                 *************************985.455666666651444444 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.015        88     288     378 ..     105     194 ..      48     203 .. 0.72
   2 ?   15.1  11.7   8.7e-07    0.0052     139     298 ..     209     350 ..     198     477 .. 0.71
   3 ?   -2.5   0.1      0.19   1.1e+03      69      93 ..     519     543 ..     518     550 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.015
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 288 krllknpifllvilssvfeillvaGfitFlp..kylEtqFslsaseAnlltGvvvipgaalGillgGllvkklklsakklaklvlvvsllsll 378
                 +++lk  i +++++   ++++ ++G ++++p    + ++F++    A+l +  + ++g +lG ++   l++  k+  +++ +l++++ ++  +
  CCD22927.1 105 WSTLKKTIVIFNVML--LTAVTYMGSSIYTPgeEQIRKEFHVGHVVATLNLS-LYVLGYGLGPIVFSPLTEIAKIGRQQTYTLTFFCFTILQI 194
                 788999999999988..44555555555554337899999999998888874.4556677777777777778888888877777777666555 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 8.7e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 139 qlllGiGatpiytlGisYidDnvkkknsplylgilyalrilGpalGfllGslllklyvdidseisltpkdprWvgaWWlgflilgvllllaaiplffFP 237
                  ++ Gi  +p  + G + i D v+++  p++l+i++  +++ p++G llG+ ++          s     + W    W+ +l+l + ++++ i++ffFP
  CCD22927.1 209 RFFTGIFCSPALATGAATIADVVSPEIVPIFLAIWSIGAMVAPIIGPLLGATMVI---------S-----KGWR---WIFWLLLWMSAATLIILTFFFP 290
                 6899***********************************************7654.........2.....2343...5556666666666677789*** PP

                 xxxxxxxxxxxxxxxxxxxx.x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 238 kelpkkkeerakkkseeesa.e..kkeekkkkeksksseeeelkslkdfpkalkrllknpifll 298
                 ++  ++  +r++++ ++++  +   + ++k ++++++++      ++ f + +k + k+p+ l+
  CCD22927.1 291 ETSANNILSRRASRIRNKTGdKsyYTVQEKLDSDTTTER----FLINTFYRPFKLIAKEPMILV 350
                 **6654444444433333323233222222222222222....345666666666666665444 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.19
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  69 igigallmalgslllalPhfisgky 93 
                 +g+g+ l++++++ la   f+  ky
  CCD22927.1 519 VGWGSSLIGFFCMALAATPFVLYKY 543
                 6899999999998888887777443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4018.62
//
Query:       CCD22928.1  [L=258]
Description: hypothetical protein NDAI_0A07740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-54  183.0   1.6    2.7e-54  182.3   1.6    1.3  1  PCNA_N     Proliferating cell nuclear antigen, N-terminal dom
    2.1e-49  166.9   0.1    4.8e-49  165.8   0.1    1.6  2  PCNA_C     Proliferating cell nuclear antigen, C-terminal dom
    6.7e-06   25.4   1.4    5.2e-05   22.4   1.4    1.9  1  Rad1       Repair protein Rad1/Rec1/Rad17
     0.0059   16.1   0.1     0.0074   15.8   0.1    1.2  1  Rad9       Rad9
  ------ inclusion threshold ------
      0.013   15.8   0.1      0.032   14.5   0.1    1.7  1  FOP_dimer  FOP N terminal dimerisation domain


Domain annotation for each model (and alignments):
>> PCNA_N  Proliferating cell nuclear antigen, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.3   1.6   7.6e-58   2.7e-54       1     124 [.       1     124 [.       1     126 [. 0.99

  Alignments for each domain:
  == domain 1  score: 182.3 bits;  conditional E-value: 7.6e-58
                 CEEEEESSHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEE-TTSSEEEEEEEEGGGSSEEEESS-EEEEEEHHHHHHHHTTSTTTSEEEEEEETTSSEE CS
      PCNA_N   1 mlearleqasllkklleaikdlvneanfdcddsGislqalDsshvaLvslelrsegfekyrCDrnlalgvnlnslskilkcannedsvtlkaedeadtl 99 
                 mlea++eqasl+k++++++kd+v+ +nf+c+++Gi +qa+D+s+v Lvsle+ +++f+++rCD++++lg++lnslskil+c+nn+ds+tl a+d++d+l
  CCD22928.1   1 MLEAKFEQASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGKDAFQEFRCDHPITLGMDLNSLSKILRCGNNTDSLTLIADDTPDSL 99 
                 9************************************************************************************************** PP

                 EEEEEECTSSEEEEEEEEEEEBGCE CS
      PCNA_N 100 alvfesekkdkiaeydlklklidld 124
                  l+fe++k+++i+ey+lkl++id+d
  CCD22928.1 100 LLLFEDTKRERISEYSLKLMDIDAD 124
                 ***********************97 PP

>> PCNA_C  Proliferating cell nuclear antigen, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.97   3.5e+03      66      84 ..      55      73 ..       9      98 .. 0.57
   2 !  165.8   0.1   1.3e-52   4.8e-49       1     127 [.     127     253 ..     127     254 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.97
                GGCBEEEESS-EEEEEEHH CS
      PCNA_C 66 eeavklelkepvtltfalk 84
                + + + + ++p+tl   l+
  CCD22928.1 55 DAFQEFRCDHPITLGMDLN 73
                3334444445555555554 PP

  == domain 2  score: 165.8 bits;  conditional E-value: 1.3e-52
                 ----SS-SEEEEEEHHHHHHHHHHHTTT-SEEEEEEETTEEEEEEEETTEEEEEEE--BEESSSGGGCBEEEESS-EEEEEEHHHHHHHGGGGGC-SEE CS
      PCNA_C   1 gipdseydavvklpssefaricrdlsqlsdsvvisvtkegvkfsasGdiGsasivlkqvkdvdkeeeavklelkepvtltfalkYlaeftkatsLserv 99 
                 +i++++yd+++ +ps++f++ +rdlsqlsds++i vtke++kf+++GdiGs+s+++k++ d+++++e++kle+++pv+ltf+ kYl++++k+++Ls+++
  CCD22928.1 127 KIEELQYDTTIMMPSADFSKTVRDLSQLSDSLNILVTKETIKFVTDGDIGSGSVIMKPFIDMENPDESIKLEMEQPVDLTFGSKYLLDIVKGSALSNKI 225
                 69************************************************************************************************* PP

                 EEEEETTSEEEEEEEETTCEEEEEEE-B CS
      PCNA_C 100 tlslssevPlvveykikdvgllayllak 127
                 +++lsse+P+++++++ +++l+++l++k
  CCD22928.1 226 GIRLSSEAPALFQFDLTSGFLQFFLAPK 253
                 ************************9998 PP

>> Rad1  Repair protein Rad1/Rec1/Rad17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   1.4   1.5e-08   5.2e-05     118     264 ..      85     230 ..       1     238 [. 0.74

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.5e-08
        Rad1 118 atscklsYkgeGsPLvliLee..agvtttcelsTyepeedldleldrqevvlkvilkselLhsalteLdatskklkilassekkapvfalsakgelgss 214
                   s++l  +++ + L l++e+   +   + +l+ ++++ d  l+ ++ +   ++++ s+ +++ +++L++ s++l+il+++e    ++++ + g++gs 
  CCD22928.1  85 TDSLTLIADDTPDSLLLLFEDtkRERISEYSLKLMDIDAD-FLKIEELQYDTTIMMPSADFSKTVRDLSQLSDSLNILVTKE----TIKFVTDGDIGSG 178
                 4457777777888899999994433344445555555533.367788888899****************************6....9***********6 PP

        Rad1 215 evefp...neksvlekfevsslsessessYkfallkkaakalalssKvslrmd 264
                 +v +      ++  e++++  +++++   + +++l  + k  als+K+ +r  
  CCD22928.1 179 SVIMKpfiDMENPDESIKLE-MEQPVDLTFGSKYLLDIVKGSALSNKIGIRLS 230
                 65544011445567788877.77888888*********************986 PP

>> Rad9  Rad9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.1e-06    0.0074      15     188 ..      26     194 ..      12     240 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.1e-06
        Rad9  15 lyleisedglelrtvnssrSayalvtlkksfFdkyekevseqirckilvKsvlsvfrslsakektvekvkisidek.ksrlivqllCkhgvkkthkisl 112
                 ++++ +edg+  ++v+ sr   +++++ k+ F+++  + ++ i++ + + s+ +++r+ +    + + +++  d+  +s l +    k + + +++++l
  CCD22928.1  26 VNFQCKEDGIIAQAVDDSRVLLVSLEIGKDAFQEF--RCDHPITLGMDLNSLSKILRCGN----NTDSLTLIADDTpDSLLLLFEDTKRERISEYSLKL 118
                 78999******************************..8999999999**********999....8899999995551555555557999********** PP

        Rad9 113 edseslkavfdkettpsklriksrvLsdllehfsssleeiti.............elakervllksyeeeekdnkkalstelsideeeF 188
                  d +   +++++ +   +++++s  +s+ +  +s+  + + i             ++++++v++k + + e+              +e 
  CCD22928.1 119 MDIDADFLKIEELQYDTTIMMPSADFSKTVRDLSQLSDSLNIlvtketikfvtdgDIGSGSVIMKPFIDMENP-------------DES 194
                 **************************************99994444444444444444444444444443333.............333 PP

>> FOP_dimer  FOP N terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   8.9e-06     0.032      22      64 ..     119     161 ..     101     168 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.9e-06
   FOP_dimer  22 aeLirefLeffeldytlsvfspEanlseelddRealskeLnis 64 
                  ++  +fL++ el+y ++++ p a++s  + d   ls  Lni 
  CCD22928.1 119 MDIDADFLKIEELQYDTTIMMPSADFSKTVRDLSQLSDSLNIL 161
                 556679***********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1956.58
//
Query:       CCD22929.1  [L=106]
Description: hypothetical protein NDAI_0A07750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-15   54.6   2.3    7.5e-15   54.3   2.3    1.1  1  zf-Tim10_DDP  Tim10/DDP family zinc finger


Domain annotation for each model (and alignments):
>> zf-Tim10_DDP  Tim10/DDP family zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   2.3   4.2e-19   7.5e-15       5      63 ..      21      81 ..      17      82 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 4.2e-19
  zf-Tim10_DDP  5 qeqqvanaqelvnkltekCfkkCi..gkypgssLdsseesCldnCvdryldvsnlvskrlq 63
                  +e q++ + +++n+++++C++kCi  ++y++++L+++e  C+d+Cv+++  +++l+++++q
    CCD22929.1 21 AEVQFDAMCTTFNNILKTCMEKCIphEEYSEGDLTKGEICCIDRCVAKMHYSNRLIGAYVQ 81
                  799*********************86669****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 808.27
//
Query:       CCD22930.1  [L=746]
Description: hypothetical protein NDAI_0A07760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-79  266.4   5.6      4e-79  265.8   4.6    1.6  2  TTL             Tubulin-tyrosine ligase family
    1.7e-43  148.7   0.0      3e-43  147.9   0.0    1.4  1  SurE            Survival protein SurE
    0.00049   19.4   0.1       0.02   14.1   0.1    2.3  2  ATPgrasp_YheCD  YheC/D like ATP-grasp
  ------ inclusion threshold ------
      0.086   10.8   0.1       0.12   10.3   0.1    1.1  1  Herpes_BLLF1    Herpes virus major outer envelope glycoprotei
        0.1   11.8   0.0        4.1    6.6   0.0    2.2  2  ATPgrasp_ST     Sugar-transfer associated ATP-grasp


Domain annotation for each model (and alignments):
>> TTL  Tubulin-tyrosine ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.38   1.4e+03     106     119 ..     341     354 ..     318     355 .. 0.79
   2 !  265.8   4.6   1.1e-82     4e-79      14     291 ..     399     716 ..     393     721 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.38
                 EB--SSB--BTTEE CS
         TTL 106 qkYierPLLidgrK 119
                 ++Yi++PL+ + +K
  CCD22930.1 341 SEYIHNPLMNAIKK 354
                 79******866555 PP

  == domain 2  score: 265.8 bits;  conditional E-value: 1.1e-82
                 S--EEEE----.----------------........-------TTHHHHHHHTTTS--S-..........B----SS---XX------BSSTHHHHHH. CS
         TTL  14 fpnsseitrkd.llvknlkrtkkklekk......lkflprtfvlpadlaefveeaekees..........ntwIvKpsasarGkgirvfnkledikki. 94 
                 ++ +s+i+rk+ ++++ l++t ++++ k      ++++p++++++ d+aef+++  +e++          ++wIvKps+s++G+girvf++++d+++i 
  CCD22930.1 399 YFANSYIYRKAlIRKHYLSHTIQTYTVKhpdsilKRAFPESYTIDLDYAEFLDDSLDENWelrqelerenRWWIVKPSMSDKGQGIRVFKTIDDLQAIf 497
                 78899******999***********************************************************************************9* PP

                 .........................HH..SSS-EEEEB--SSB--BTT...EEEEEEEEEEE-..TT-XXXXXXXXXXXXXXXXXX........XXXXX CS
         TTL  95 .........................vsqsqkeplvvqkYierPLLidg...rKFDlRlyvlvtsvnpLrvYvYkegllRfasvkYsp......svsdld 159
                                            +sq +++++q+Y ++PLL+ +   +KF++R+y+ +++  +L+v+vY+++l++fa   Y++      sv++l+
  CCD22930.1 498 dsfddeeededqddgndagliddnkIIISQLRHFIIQEYMSNPLLLPSmdnKKFHIRCYITCKG--DLEVFVYDRMLALFAPTSYTSledneySVTNLN 594
                 **********************9988899*****************99999*************..********************************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         TTL 160 dlevHLTNysiqkkskslneesnekkgkkwslqelekylee..vrkeeiweeiesiiiktilaaeveasrlnvqrlkncfelyGvDilidenlkpwLlE 256
                 +l +HLTN+++q k           ++k+ s+ e++k +++  v+k++i+e+i++i+++ +laa  +a+rln+q+lkn+fe+yGvD+l+d+n++++LlE
  CCD22930.1 595 NLQCHLTNTCLQTK----------NENKDLSVMEFDKLSDIsdVNKKQIKEQIHEITHDLFLAA-INANRLNFQPLKNAFETYGVDFLVDSNYNVKLLE 682
                 **************..........88999***********99**********************.********************************** PP

                 XXXXX..XXXXXXXXXXXXXXXXXXXX.XXXXXXX CS
         TTL 257 vNasPdlksttkldaelkeeliddvlnlvvvppdk 291
                 +Na+Pd+k+t++  + l++el+d++++  +++p+ 
  CCD22930.1 683 INAYPDFKQTGQELKGLIDELFDNIVS-KCIYPFL 716
                 ***************************.4466655 PP

>> SurE  Survival protein SurE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.9   0.0   8.5e-47     3e-43       1     193 [.       3     240 ..       3     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 147.9 bits;  conditional E-value: 8.5e-47
                 EEEE-SS-TT....-HHHHHHHHHHT..TTTSEEEEEEESSS-TTCTTS--SSSEE.......................EEEEEECS............ CS
        SurE   1 iLltNDDGie....apgiralveala..aaghevvvvaPdserSgigkaltleepl.......................rveseeee............ 58 
                 +L+tNDDG+     +p+ir +++ +     +++++v++P++++S+igka+ + ++l                       +                   
  CCD22930.1   3 VLITNDDGPLhdqfSPYIRPFIQYILstYPEWQITVCVPHTQKSWIGKAHLAGKNLvaqflysnlnsndnkfwgpfnqpQ------Lksrstsrndefp 95 
                 79*******999*********9997768789*******************666888787777766666665555555541......0444455667788 PP

                 ........TTTCEEEE.SS-HHHHHHHHHHTTTTTS.SSEEEEEEEES---GGGG.GG-HHHHHHHHHHHTT.SEEEEEEEESSSSS-SSS---HHHHH CS
        SurE  59 ........eeeeeyav.sGtPadcvklaleellkekkpdlVvSGiNhGaNlgtdv.lySGTvgAaleaaleg.ipaiAvSlaskkeeekkeedtfeaaa 146
                         +++ e+ + +GtPa+cv+++l+ l+k  + dlV+SG+N G+N+++++ ++SGTvgAa+e+++++  +a+A+S+a+++ ++  + + ++ a+
  CCD22930.1  96 yinnpeipKNAIEWILlDGTPASCVNIGLHYLSKT-EFDLVISGPNVGRNTSAAYiTSSGTVGAAMESIICNdTKAVALSWAYFDGRKIVPLELMRMAS 193
                 88888888888899988************888864.58*****************9************998527*********9866656666677766 PP

                 HHHHHHHTTETTS-...SS-EEEEEEE..SS.GCG-SEEEE-B--CCSC CS
        SurE 147 kvaaklveklieklllekvellnvNvP..eleeeeikgvkvtrlgrrry 193
                 k   ++v+ ++ k ++++++l+++NvP  + + + +++v+++ ++++r+
  CCD22930.1 194 KRSMDIVN-FLLKNWDDETDLYSINVPlvD-SLNGMTKVRYAPVWENRW 240
                 66666664.4455669***********632.456666799*****9998 PP

>> ATPgrasp_YheCD  YheC/D like ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.016        56      41     115 ..     460     538 ..     452     568 .. 0.65
   2 !   14.1   0.1   5.7e-06      0.02     167     250 ..     626     708 ..     615     713 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.016
  ATPgrasp_YheCD  41 leemlekyks.vylKpanGskGkgilriekeekellllsrekkk..kkkkrlaslselesllkkllkkkr.ylvQqgid 115
                     l++ le++++  ++Kp+ + kG+gi   +  ++ + +  +  ++  ++ +   + + l    k  +++ r +++Q++++
      CCD22930.1 460 LRQELERENRwWIVKPSMSDKGQGIRVFKTIDDLQAIFDSFDDEeeDEDQDDGNDAGLIDDNKIIISQLRhFIIQEYMS 538
                     66666666665799***********988886655556555555533455555555666666665555544588888764 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 5.7e-06
  ATPgrasp_YheCD 167 eellkkafgeekaekileeleelalelaealeesfgr.lgElGlDlgidkegkvWllEvNskpgrsifkeagdkeaarksvkrpl 250
                     +++ kk+++ e++++i+++l  +a+++ +   + +++ +   G+D+ +d++ +v llE+N+ p  +   +   k ++ +++ +++
      CCD22930.1 626 SDVNKKQIK-EQIHEITHDLFLAAINANRLNFQPLKNaFETYGVDFLVDSNYNVKLLEINAYPDFKQTGQE-LKGLIDELFDNIV 708
                     555555555.45688888888888888888889999989999*********************98655543.4456666666655 PP

>> Herpes_BLLF1  Herpes virus major outer envelope glycoprotein (BLLF1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   3.4e-05      0.12     362     409 ..     105     154 ..      88     173 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3.4e-05
  Herpes_BLLF1 362 fkckwtltsgtpsgcenisgafasnrtfditvsg..lgtapktliitrta 409
                       w l  gtp+ c ni   + s+  fd+ +sg  +g    +  it + 
    CCD22930.1 105 NAIEWILLDGTPASCVNIGLHYLSKTEFDLVISGpnVGRNTSAAYITSSG 154
                   4568*****************************93334444444555444 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.017        60      59      86 ..     464     494 ..     413     517 .. 0.82
   2 ?    6.6   0.0    0.0011       4.1     244     270 ..     665     691 ..     660     707 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.017
  ATPgrasp_ST  59 leeg...vviKpakgsgGkGilviteredqd 86 
                  le++    ++Kp  +  G+Gi+v + ++d +
   CCD22930.1 464 LEREnrwWIVKPSMSDKGQGIRVFKTIDDLQ 494
                  444444589***************9988754 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0011
  ATPgrasp_ST 244 ylGwDivldeekgplllElNarpglai 270
                    G+D+ +d + ++ llE+Na p+ + 
   CCD22930.1 665 TYGVDFLVDSNYNVKLLEINAYPDFKQ 691
                  579******************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 5431.40
//
Query:       CCD22931.1  [L=448]
Description: hypothetical protein NDAI_0A07770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-41  141.6   1.4      2e-41  141.6   1.4    2.4  2  RXT2_N     RXT2-like, N-terminal
  ------ inclusion threshold ------
      0.037   13.1   0.1       0.06   12.4   0.1    1.3  1  RE_HindVP  HindVP restriction endonuclease
       0.28   11.1   3.0        5.2    7.1   0.1    3.6  3  RPT        A repeated domain in UCH-protein
        3.7    7.0  13.4        1.4    8.4  10.0    2.0  2  Lin-8      Ras-mediated vulval-induction antagonist
        5.2    8.1   6.6        5.5    8.0   0.1    2.8  3  DUF2547    Protein of unknown function (DUF2547)


Domain annotation for each model (and alignments):
>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.6   1.4   5.5e-45     2e-41       1     155 [.      48     202 ..      48     203 .. 0.85
   2 ?    2.8   5.6      0.03   1.1e+02      47      99 ..     228     268 ..     205     278 .. 0.57

  Alignments for each domain:
  == domain 1  score: 141.6 bits;  conditional E-value: 5.5e-45
      RXT2_N   1 tNRGnKLkkkaefvhegrLnsskgdeelkkkveyngserkilsrnpierskrkk....kekekeekeeeeedeegdeededdddeeeaeaaeenpykkv 95 
                 tNRGnKL++k+efv +++Lns k d+e  ++++yngse+++l+r+  + ++  k    +  ++ e  ++ ede++d+ d+d dd++e   +++ + ++v
  CCD22931.1  48 TNRGNKLLQKSEFVARSNLNSVKADNE--NVIFYNGSEHNLLQRRYKLPKHEIKiegkT--SRVEGGKAGEDEDEDDTDDDGDDDDEILLQDVPLDTLV 142
                 8************************99..**************9999997777677432..333334444444444444444444468899******** PP

      RXT2_N  96 rleelLaPltspsdlithpslsrtykskaLteLalqlieliekEqeslvklkkLlevllG 155
                 +++elL P+ts+sd+ t+p    ++ksk+L+eL+l+l+ ++ekEq+s+v+++++le +lG
  CCD22931.1 143 NVKELLIPITSLSDISTRPVRGAPFKSKILNELTLKLVLMVEKEQDSVVRYSNMLELFLG 202
                 ***********************************************************9 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.03
      RXT2_N  47 ierskrkkkekekeekeeeeedeegdeededdddeeeaeaaeenpykkvrlee 99 
                  e      +e+++++++++++de+ +e+d       e+++a   py++ ++ee
  CCD22931.1 228 EE------TEEQEQKQQKQQKDESVNEVDV------ENTEAISPPYAQTNIEE 268
                 11......2333333444444444444443......34557788999999987 PP

>> RE_HindVP  HindVP restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.7e-05      0.06      99     189 ..     310     400 ..     280     409 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
   RE_HindVP  99 talPdnttcelseeeygcEivvRpdtivylalsiadklkeekealkeilkpilssikdweeekevlpklseiieaiddllseklekqkPlv 189
                  alP  +t+++  +  g+   + ++++ + a s+ d+++ +++  +  l+   + i++++e ++ l k+++i e + +  +e+  +q+  v
  CCD22931.1 310 FALPFIQTTSNLSNFLGSSTTTTTSSVKQAAPSLNDHIDATRQLSQIALQRNREFIRNLSEIRNCLAKVNRIRERVFAWSKEYAGIQEDDV 400
                 6899989999999999************************************************************999999999997554 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.078   2.8e+02      15      41 ..       6      33 ..       1      35 [. 0.71
   2 ?    7.1   0.1    0.0014       5.2      33      56 ..     344     367 ..     331     369 .. 0.85
   3 ?   -0.6   0.3      0.35   1.3e+03      11      20 ..     432     441 ..     426     443 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.078
         RPT 15 tdDdviitayqvkleddp.sqkdklrrA 41
                +++  ii+ ++ k+ ++  ++   l+r 
  CCD22931.1  6 MEEQNIINTFTRKIIKAKtGNHNPLKRS 33
                78999********944443666666665 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0014
         RPT  33 sqkdklrrALkvIAeeRkSelLln 56 
                 ++ +++ r+L+ IA +R+ e ++n
  CCD22931.1 344 NDHIDATRQLSQIALQRNREFIRN 367
                 678899**************9998 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.35
         RPT  11 identdDdvi 20 
                 id+++dDd++
  CCD22931.1 432 IDPEVDDDEL 441
                 89******98 PP

>> Lin-8  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.25   9.1e+02     271     306 ..     160     200 ..      65     202 .. 0.61
   2 ?    8.4  10.0   0.00039       1.4     162     271 ..     227     362 ..     183     372 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.25
       Lin-8 271 riareqPervkliRkaLfktvlalddk.....eyesagevF 306
                 r +r  P ++k++ +   k vl ++++      y+++ e+F
  CCD22931.1 160 RPVRGAPFKSKILNELTLKLVLMVEKEqdsvvRYSNMLELF 200
                 34445566666666666666666666555555566666655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00039
       Lin-8 162 ekveveeeaeeqgsmdlketeaeevkeeqmeqsfe..eeeeakleeptvniveeeaaaravdqsfgsaeqql..........................e 232
                 e+ ++e+e+++q++ +  +++++ev+ e++e  +   ++ + ++ +++ +++e+e +a++ ++   +++++                           +
  CCD22931.1 227 EEETEEQEQKQQKQQK--DESVNEVDVENTEAISPpyAQTNIEETKEVLDTIESEGMATRSSNVKLPEKNNVatdpiideiddpffalpfiqttsnlsN 323
                 2222222222222222..333333333333333334444444445555566666666666555444444333888888899999999999999999987 PP

       Lin-8 233 ssssrtssassssssaapsstaakdfeeemkqIteqakr 271
                    s+t++++ss ++aaps +++ d +++++qI+ q +r
  CCD22931.1 324 FLGSSTTTTTSSVKQAAPSLNDHIDATRQLSQIALQRNR 362
                 8888999999999999******************99888 PP

>> DUF2547  Protein of unknown function (DUF2547)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         5   1.8e+04      84      96 ..     154     166 ..     141     167 .. 0.74
   2 ?    1.3   1.9      0.18   6.6e+02      21      57 ..     227     253 ..     220     285 .. 0.45
   3 ?    8.0   0.1    0.0015       5.5      15      64 ..     309     362 ..     308     383 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5
     DUF2547  84 syrlelaPIRagP 96 
                    +++ P+R++P
  CCD22931.1 154 LSDISTRPVRGAP 166
                 4556668999999 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.18
     DUF2547  21 aqelaneeavenyqntqsvqqqvletaallqqveqqq 57 
                   e++++e+     ++q  +qq  e+++ +   + ++
  CCD22931.1 227 EEETEEQEQ-----KQQ--KQQKDESVNEV---DVEN 253
                 333333332.....222..33333333333...2222 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0015
     DUF2547  15 ifaLPeaqelaneeav...enyqntqsvqqqvletaallqqveq.qqlfiaeak 64 
                 +faLP +q+++n ++     +  +t+sv+q++ +    ++ + q  q+ +++++
  CCD22931.1 309 FFALPFIQTTSNLSNFlgsSTTTTTSSVKQAAPSLNDHIDATRQlSQIALQRNR 362
                 6*********99988777555555667888887777777644431344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1619  (0.0903006); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 3048.45
//
Query:       CCD22932.1  [L=234]
Description: hypothetical protein NDAI_0A07780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-06   27.4   0.0    5.5e-06   26.9   0.0    1.3  1  4HBT_2    Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> 4HBT_2  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.1e-10   5.5e-06       1     109 [.      73     182 ..      73     209 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.1e-10
      4HBT_2   1 vrpndvDlnghlnnarylryleearvkflertglksrsiarrgiglilssahvryrrplkfpdrltvefrvididaktliiehrfls.nadgkk.aarv 97 
                 v p ++D+++h nn +y+  l++ r k++  +  k  ++ +r   + +++  + + ++lk+  ++ v++ v ++d+k+l++  rf++ ++d+ + +   
  CCD22932.1  73 VSPLECDFYFHKNNCTYFTDLDISRSKLMCAIFQKLFLNSKRYPFVPVANVFTNFLKELKPMAKYNVVTSVLCWDEKWLYVISRFTQgKKDD-LlCSLS 170
                 567899***********************744334444444444566666699********************************9933333.347777 PP

      4HBT_2  98 eerivvmdygkr 109
                 ++++v+ d  k+
  CCD22932.1 171 LTKYVLKDGRKT 182
                 777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       400  (0.0223102); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1694.25
//
Query:       CCD22933.1  [L=1507]
Description: hypothetical protein NDAI_0A07790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-24   86.7   0.0    3.6e-24   85.6   0.0    1.5  1  Pkinase      Protein kinase domain
    2.4e-09   36.9   0.0    1.3e-08   34.4   0.0    2.1  2  Pkinase_Tyr  Protein tyrosine kinase
     0.0008   19.5   1.5         18    5.9   0.0    5.5  6  HEAT         HEAT repeat


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0     6e-28   3.6e-24      18     261 ..      42     299 ..      36     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 6e-28
                 EEETTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHH CS
     Pkinase  18 aveketgkivAvKkikkekakkkke...kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegley 113
                 ++  + + ++ +K++ k k++ + +   +++ +E ++l     pn++++ +++e+++  y++ ++++ + l d+l+ +  l++ e+k+ia q+l+ ++ 
  CCD22933.1  42 CKALDPNGEIIIKVFIKPKEDYNLKpilSRIETESQLLSP--LPNVLNYSKIIESNRAAYMIRQHLKFN-LYDRLSSRPYLQSLELKFIAFQLLQTINE 137
                 5666777888999999988888776666666666666655..69***********************77.9999999999******************* PP

                 HHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.........BCTTTSCGGGS-HHHH...............TTSCBSHHHHHHHHHHHHH CS
     Pkinase 114 lHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.........ltsfvgtseYlAPEvl...............keneyskkvDvWslGvily 188
                 +H+ gi+H D+K+eNiL+ + + + +tDF    +     +         +++    s YlAPE                 ++++ + ++D++s G+ ++
  CCD22933.1 138 IHNLGICHGDIKTENILVLSWNWILLTDFAAHLKPIYLPEdnpgefsfyFDTSKRRSCYLAPERFdnsklfndttnedtsSDHKLTMEMDIFSTGCCIA 236
                 *******************9999******654333222225789*9*999999999*********99999999888876555777************** PP

                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqh 261
                 el+t+  p    + ++ ++ ++++    +++ +  ke+lp     +e +++l+ +++k +p+kRl+++e+lq+
  CCD22933.1 237 ELFTEGRPIF--NLSQLFKYKANE----FNVENYLKEQLP----NDEPLRSLILDMIKLNPSKRLSCHEILQK 299
                 **99766666..255555666666....445444344444....47899*********************985 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.3e-12   1.3e-08      28     257 ..      48     298 ..      30     300 .. 0.82
   2 ?   -1.0   0.0      0.14   8.6e+02      32      81 ..    1357    1409 ..    1343    1444 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.3e-12
                  EEEEEEEEESTTSSHHHHHHHHHHHHHHHTS..-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr  28 evkVavKtlkeeateeekeelleeakimkkl..khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskk 123
                  + ++++K++ + +++ + + +l+ +++ ++l    pn++++  ++ +++  +++ + +k  +L + L ++  + l+  +l  +a+q+ + ++ +++  
   CCD22933.1  48 NGEIIIKVFIKPKEDYNLKPILSRIETESQLlsPLPNVLNYSKIIESNRAAYMIRQHLKF-NLYDRLSSR--PYLQSLELKFIAFQLLQTINEIHNLG 142
                  557788888777777778888888888777766789*********************998.8******98..99999********************* PP

                  EEEST-SGGGEEEEETTEEEE-STTTHEE.TTTSSEE.....EETTSSTSGGGGS-HHHHHHSE...............EEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 124 lvHrdlaarNvLlsenkvvkisDfGLard.iekddey.....vkkeeaklpvkWmapEslkekk...............ftsksDvWsfGvllwEift 200
                  + H d+ + N+L+ + + + ++Df+   + i+  ++         +++k +  ++apE ++++k               +t + D++s G ++ E+ft
   CCD22933.1 143 ICHGDIKTENILVLSWNWILLTDFAAHLKpIYLPEDNpgefsFYFDTSKRRSCYLAPERFDNSKlfndttnedtssdhkLTMEMDIFSTGCCIAELFT 240
                  ************************96543133322222344445567888999********************************************* PP

                  TSSGTTTTSHHHHH.HHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 201 lgespypglkneev.leklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                   g+  ++  +  +  ++ ++ ++ l++     e l +l+ +  + +p++R + +e+++
   CCD22933.1 241 EGRPIFNLSQLFKYkANEFNVENYLKEQLPNDEPLRSLILDMIKLNPSKRLSCHEILQ 298
                  998665544444431344566666777777789999**************99999876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.14
                   EEEEESTTSSHHHHHHHHHHHHHHHTS...-BTTB--EEEEEESSSSEEEEEE CS
  Pkinase_Tyr   32 avKtlkeeateeekeelleeakimkkl...khpnivkllgvctkeepllivte 81  
                    vK + ++ t+ + e++    k ++++    +  i +++++c++e+++++vt 
   CCD22933.1 1357 CVKAFLNSDTQPSLEHFQATEKYLEDItfkPNASISQVTALCVNEQQVILVTT 1409
                   5888888888888999999999999885334557999*******999999986 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.2     7e+03       1      26 [.     462     489 ..     462     491 .. 0.82
   2 ?    2.8   0.0     0.031   1.9e+02       1      30 [.     509     540 ..     509     541 .. 0.83
   3 ?   -0.2   0.0      0.27   1.6e+03       7      29 ..     611     633 ..     609     635 .. 0.86
   4 !    5.9   0.0     0.003        18       1      24 [.     644     667 ..     644     671 .. 0.91
   5 ?    3.4   0.1     0.019   1.1e+02       1      29 [.     683     711 ..     683     712 .. 0.93
   6 ?   -1.1   0.0      0.56   3.4e+03       8      30 ..     730     752 ..     727     753 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
                 HHHHHHHHH.T-.SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkll.sD.pspeVReaAakaLga 26 
                 ++P ++++  +D  +p++   ++++L +
  CCD22933.1 462 IVPYIVSCFqNDmANPDIQILTIQNLIQ 489
                 7899999998889999888888888765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.031
                 HHHHHHHHHT-..SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsD..pspeVReaAakaLgalaev 30 
                 llP l +lls   +++ V +  a+++g+l+++
  CCD22933.1 509 LLPRLKNLLSKckDNSYVKMVFANCFGDLVSI 540
                 68888888766778889************985 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.27
                 HHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgalae 29 
                 +ll+D++  V +a ++++  l++
  CCD22933.1 611 TLLTDSDTIVKMALLNNILPLCR 633
                 689**********9999988776 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.003
                 HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaL 24 
                 +l +l++ l+D+++  R + +++L
  CCD22933.1 644 ILSHLITYLNDKNSALRLTLIENL 667
                 799****************99998 PP

  == domain 5  score: 3.4 bits;  conditional E-value: 0.019
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 +lPll++ l D++  +  +++ +L +l++
  CCD22933.1 683 ILPLLIQTLIDSEELIVVSVLHTLKNLLQ 711
                 89*****************9999999976 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 0.56
                 HHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   8 llsDpspeVReaAakaLgalaev 30 
                 ll +p+  +Re ++  + +++ +
  CCD22933.1 730 LLLHPNHWIREFTLGIISEICAN 752
                 56799999******999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 10023.76
//
Query:       CCD22934.1  [L=812]
Description: hypothetical protein NDAI_0A07800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-15   55.6   2.0    1.8e-14   54.2   2.0    1.7  1  ERCC4     ERCC4 domain
     0.0062   16.9   0.2      0.025   14.9   0.2    2.1  1  PriX      Primase X
  ------ inclusion threshold ------
      0.029   14.5   0.1       0.15   12.1   0.1    2.3  1  MAGI_u1   Unstructured region on MAGI
       0.83    9.7   3.8         33    4.6   0.3    3.6  3  DUF2187   Uncharacterized protein conserved in bacteria (DUF2
        2.1    8.8   0.0        2.1    8.8   0.0    3.5  4  CENP-H    Centromere protein H (CENP-H)


Domain annotation for each model (and alignments):
>> ERCC4  ERCC4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   2.0     5e-18   1.8e-14      33     156 .]     550     710 ..     530     710 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 5e-18
                 .EE...CTT....................EEEEEEEHHHHHHHHCC..SHHHHHHHHHHH.H-SEEEEEEES-GGGTT..................... CS
       ERCC4  33 ilwrrkvkaeynleldieepceek.....vlverksaddlvasikd..grleeqvsrlkrngykkpillvegldqykrknknsrnkqykakvrq..... 119
                 i++ r++++ y+ ++d ++pce k     v++++++a++++  ++   ++l++ ++  +    k++il++  l++++r + n + + yk++v++     
  CCD22934.1 550 IRFLRRCDSIYDTNHDLYYPCETKimeenVCLLYYDAQEFFEQYSTnkKELYRTTRSFSG-RDKHVILVLNELNKLRRMIDNLEDRIYKDRVNEqltgs 647
                 69**************************************888854458****9999966.55567777799*************************** PP

                 ..........................THHH.HHHHHHHHHHHHS-EEEEESSHHHHHHHHHHH CS
       ERCC4 120 ..........................inrktiesaLvqlqldfgvsilttesanetaewlanl 156
                                           +++ ++e++L+ +   ++v+i+ ++s++e+++ l+nl
  CCD22934.1 648 nvssvspskqgknkrtkkmdeienlgMRKFDLEQRLRFIDREWKVKIHVVNSHSEFINSLPNL 710
                 ****988888877777777665555555557*****************************987 PP

>> PriX  Primase X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   7.1e-06     0.025      24      65 ..     464     506 ..     447     525 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.1e-06
                 HHHHHHHTS---HHHHHHHHHHHH.....TTSSSS---HHHHH CS
        PriX  24 isrYLvnvkklseeealkklkefl.ksckkkknlskiyeswir 65 
                 +srY++n + +s++e+   ++++l ++ +  k++++iy+  ++
  CCD22934.1 464 LSRYIINTRAYSDDESESIVRHWLrENKEAFKQSNQIYRDNVK 506
                 7***********************777778999*****98776 PP

>> MAGI_u1  Unstructured region on MAGI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.3e-05      0.15       8      32 ..     650     674 ..     640     681 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.3e-05
     MAGI_u1   8 dglspssestpkRnKSyndMenAgI 32 
                 +++sps++++ kR+K   + en g 
  CCD22934.1 650 SSVSPSKQGKNKRTKKMDEIENLGM 674
                 579***************9999876 PP

>> DUF2187  Uncharacterized protein conserved in bacteria (DUF2187)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.3    0.0092        33      27      41 ..      30      44 ..      14      49 .. 0.86
   2 ?    3.2   0.1     0.025        91      19      41 ..      63      87 ..      51      97 .. 0.78
   3 ?   -0.3   0.0       0.3   1.1e+03      41      53 ..     206     218 ..     200     220 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0092
     DUF2187 27 enSViVdltimdnfd 41
                + SV+Vdl++ d++d
  CCD22934.1 30 NGSVVVDLSVLDDED 44
                56**********986 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.025
     DUF2187 19 tGiVekvnenSViVdlt..imdnfd 41
                   V+ v  +SV+ dl+  + d++d
  CCD22934.1 63 SNDVIHVDRRSVVHDLSqdYIDDED 87
                56799***********933444444 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.3
     DUF2187  41 deleleekTVVnH 53 
                 d+ +++++ +VnH
  CCD22934.1 206 DKWDMKSRSIVNH 218
                 66799******** PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00059       2.1       1      80 [.     201     284 ..     201     287 .. 0.84
   2 ?   -0.8   0.5      0.55     2e+03      36      63 ..     328     357 ..     322     368 .. 0.61
   3 ?   -2.1   0.1       1.4   4.9e+03      45      61 ..     481     497 ..     446     520 .. 0.45
   4 ?   -0.6   0.2       0.5   1.8e+03      10      70 ..     612     671 ..     605     697 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00059
      CENP-H   1 llplieqrdelssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesek....eklkeelekleaelkksrq 80 
                 l++l ++ d+ s ++ ++ + +++lq+e +++   ++   + n+   +e+     +++ ++    + +k+e+++ +  +  sr+
  CCD22934.1 201 LKNLADKWDMKSRSIVNHVAPHATLQDESSKICITTIPKAKPNVPSYQEIFDDDDDDDDDDdddgMSNKKEMATQQDSFGLSRN 284
                 5677888999****************************************6555555444448898899999999988887775 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.55
      CENP-H  36 nlrlkrknrelaael.lelakekesek.ek 63 
                 ++r++r+ re+ +   l+ +k+k+++   k
  CCD22934.1 328 SIRIQREAREKSKNElLQVRKDKNKKAsIK 357
                 567777777777654356666666665433 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.4
      CENP-H  45 elaaellelakekesek 61 
                 +++++ l+++ke+ +++
  CCD22934.1 481 SIVRHWLRENKEAFKQS 497
                 22222222222222222 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.5
      CENP-H  10 elssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesekeklkeelek 70 
                 + +  +l+  ++lr + ++l++   + +  ++ + + ++++   +k+ +++++k+++e+e+
  CCD22934.1 612 KHVILVLNELNKLRRMIDNLEDRIYKDRVNEQLTGSNVSSVS-PSKQGKNKRTKKMDEIEN 671
                 555555566666666666665555555555555555555552.233333333233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1206  (0.0672653); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 5491.39
//
Query:       CCD22935.1  [L=292]
Description: hypothetical protein NDAI_0A07810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.9e-21   74.8   0.4    7.9e-21   74.8   0.4    3.3  3  Fes1             Nucleotide exchange factor Fes1
    0.00072   19.4   2.1      0.028   14.3   0.4    3.5  4  IBN_N            Importin-beta N-terminal domain
     0.0014   17.8   0.4      0.004   16.3   0.4    1.8  1  CDC14            Cell division control protein 14, SIN compon
     0.0018   18.7   0.2       0.23   11.9   0.0    3.2  4  HEAT_2           HEAT repeats
     0.0018   18.2   1.6     0.0018   18.2   1.6    2.5  3  DUF3361          Domain of unknown function (DUF3361)
     0.0041   17.2   5.0      0.014   15.5   1.2    2.6  3  V-ATPase_H_C     V-ATPase subunit H
     0.0094   15.2   3.6       0.02   14.1   0.4    2.5  3  DUF4704          Domain of unknown function (DUF4704)
  ------ inclusion threshold ------
      0.014   15.4   1.3      0.014   15.4   1.3    2.4  3  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
      0.019   14.5   2.1          3    7.3   0.1    2.6  3  Tti2             Tti2 family
      0.059   13.3   0.2       0.67    9.9   0.1    2.5  2  UME              UME (NUC010) domain
      0.068   13.7   0.5        1.7    9.2   0.5    2.9  1  HEAT_EZ          HEAT-like repeat
      0.091   13.1   0.1        4.3    7.9   0.0    3.2  2  HEAT             HEAT repeat
       0.15   12.1   1.4        8.9    6.5   0.1    3.5  4  Arm              Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> Fes1  Nucleotide exchange factor Fes1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.4   5.7e-24   7.9e-21       1      93 []       1      85 [.       1      85 [. 0.87
   2 ?    0.6   0.0       0.8   1.1e+03      58      85 ..     136     163 ..     131     167 .. 0.87
   3 ?   -1.9   0.1       4.7   6.5e+03      66      83 ..     259     276 ..     232     281 .. 0.69

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 5.7e-24
        Fes1  1 lneLLkWsienstaedasaseqeaesaaeaakaskekldpeildallg.....gpsdaelmkeamevledeevtlenkliAldnleqlieslDnAnnL 93
                +++LL+Wsi+n    +++++e+++++ ++         dp +l++l+g     gp+d +lmk+++evl++++v+++ kl A+dn+e+lie+lDnAnn+
  CCD22935.1  1 MEKLLHWSIAN----SQNDEEAKQKAGTP---------DPRLLQQLFGgagssGPDDPTLMKQSIEVLMNPDVDVDTKLVAIDNFEMLIENLDNANNI 85
                799******99....34444445555555.........789*****99888999******************************************96 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.8
        Fes1  58 eamevledeevtlenkliAldnleqlie 85 
                 + ++ ++d++++l+ +++Al  l +l+ 
  CCD22935.1 136 KVIALVNDKNQNLNVRIKALYALSNLVR 163
                 668889999***********99999996 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.7
        Fes1  66 eevtlenkliAldnleql 83 
                 +e +len  + ++++e+l
  CCD22935.1 259 NEDELENLRTGFEKIESL 276
                 367777777777777776 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.4   1.9e+03      21      36 ..       9      23 ..       5      24 .. 0.67
   2 ?    1.8   0.0      0.17   2.3e+02      12      45 ..      45      78 ..      43      87 .. 0.84
   3 ?   -1.4   0.0       1.7   2.3e+03      25      46 ..     101     120 ..      77     125 .. 0.72
   4 !   14.3   0.4     2e-05     0.028       6      49 ..     125     166 ..     122     204 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.4
                HHHCTTSHHHHHHHHH CS
       IBN_N 21 ilanseselevRqlAa 36
                i ans++++e++q A+
  CCD22935.1  9 I-ANSQNDEEAKQKAG 23
                4.45555559999886 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.17
                TCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHH CS
       IBN_N 12 pgflsallqilanseselevRqlAalyLknlitk 45
                p+ + + +++l+n + +  +++ A+  ++ li++
  CCD22935.1 45 PTLMKQSIEVLMNPDVDVDTKLVAIDNFEMLIEN 78
                66778899****************9888888765 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.7
                 TTSHHHHHHHHHHHHHHHHHHH CS
       IBN_N  25 seselevRqlAalyLknlitkh 46 
                 +++  e+R +A++++   ++++
  CCD22935.1 101 EDL--ELRAAALSIIGTAVQNN 120
                 444..59999999887777765 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 2e-05
                 HHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGS CS
       IBN_N   6 kqlekqpgflsallqilanseselevRqlAalyLknlitkhWsd 49 
                 ++++k+ g+l++++ ++ +++  l+vR  A+  L nl++++  +
  CCD22935.1 125 NNFSKYDGSLNKVIALVNDKNQNLNVRIKALYALSNLVRNN--K 166
                 689************************************99..3 PP

>> CDC14  Cell division control protein 14, SIN component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.4   2.9e-06     0.004     135     210 ..     131     207 ..      94     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.9e-06
       CDC14 135 eikmnllLdlle.pancpaiqsatlltLvtaLldtpqNtRt.FEeldGlltvtsLfksrstsrevklklvEFLyfYLm 210
                 + ++n+++ l++ +++  ++ +++l  L + L+++ + + t FE+l+Gl +++ + k+ s + ++k++ +  L  +L+
  CCD22935.1 131 DGSLNKVIALVNdKNQNLNVRIKALYAL-SNLVRNNKEIATeFEKLNGLDIISPILKDESAKTKLKMRAIALLTAFLT 207
                 5578888888873566789999999998.5677777766544****************************99988875 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.052        72      26      56 ..      84     114 ..      51     145 .. 0.69
   2 !   11.9   0.0   0.00017      0.23       3      58 ..      93     161 ..      91     172 .. 0.77
   3 !    9.1   0.0    0.0012       1.7       4      72 ..     137     220 ..     134     227 .. 0.65
   4 ?    1.0   0.0      0.42   5.8e+02      63      80 ..     272     289 ..     262     291 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.052
      HEAT_2  26 rignpealpaLvellededpavRraaaeaLg 56 
                 +i n ++ + ++++l+ ed + R+aa   +g
  CCD22935.1  84 NIENMKLWDPILKILDFEDLELRAAALSIIG 114
                 5555666666666666666666666655444 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00017
      HEAT_2   3 aLlqalendpdpevrraairaLg.....rignp.......ealpaLvelleded..pavRraaaeaLgai 58 
                 + l++l + +d e+r+aa+  +g     + +++        +l+ ++ l++d++   +vR  a  aL+ +
  CCD22935.1  93 PILKIL-DFEDLELRAAALSIIGtavqnNVNSQnnfskydGSLNKVIALVNDKNqnLNVRIKALYALSNL 161
                 678888.88999***********8877733333556666688********88652268*********975 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0012
      HEAT_2   4 Llqalendpdpe..vrraairaLg.......rignp....ealpaLvelleded..pavRraaaeaLgai.gdpealpaLkelld 72 
                  ++++ nd++++  vr++a+ aL        +i+++      l+++ ++l+de+  +   + a+  L a+  + +  + L  ll+
  CCD22935.1 137 VIALV-NDKNQNlnVRIKALYALSnlvrnnkEIATEfeklNGLDIISPILKDESakTKLKMRAIALLTAFlTSVDINDDLISLLR 220
                 55655.888885559*********765444422222544466********99874467888888888776344555555555555 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.42
      HEAT_2  63 alpaLkellddddddvvR 80 
                  +++Lk++l++dd  vv+
  CCD22935.1 272 KIESLKDRLNEDDYLVVK 289
                 6899*****999988886 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.5   2.1e+03      68      89 ..     102     123 ..      88     131 .. 0.76
   2 !   18.2   1.6   1.3e-06    0.0018      55     129 ..     134     210 ..     130     225 .. 0.87
   3 !   10.4   0.3   0.00033      0.46       3     112 ..     169     286 ..     167     292 .] 0.72

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.5
     DUF3361  68 dasilqrslaiLesivlnssel 89 
                 d ++  ++l+i+   v+n+ + 
  CCD22935.1 102 DLELRAAALSIIGTAVQNNVNS 123
                 5666778999999999987654 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.3e-06
     DUF3361  55 ikkiasivnksaadasilqrslaiLesivlnsselyelvekevtlesLiehL..qssnqeiqtnalaLlnALllkad 129
                 ++k++  vn ++++ ++  ++l  L ++v n++e  ++ ek   l+ +   L  +s+++++++ a+aLl+A+l+ +d
  CCD22935.1 134 LNKVIALVNDKNQNLNVRIKALYALSNLVRNNKEIATEFEKLNGLDIISPILkdESAKTKLKMRAIALLTAFLTSVD 210
                 589******************************99999999999999999994334455699**********99877 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00033
     DUF3361   3 AqeFisrdGlkllvkiveegke...sgeilayaLtafleLmdhgivsWdtlsdeFi.kkiasivnksaadasilqrslaiLesivlnssel.yelveke 96 
                 A+eF + +Gl+++  i+++++     +     +Ltafl  +d +      l ++ i ++ ++++n++  d +++ r l+ L +++ +  +   +++e+ 
  CCD22935.1 169 ATEFEKLNGLDIISPILKDESAktkLKMRAIALLTAFLTSVDINDDLISLLRKDGIlETTINCLNTE-IDLNLIDRVLNLLAQLIAAGIKFnEDELENL 266
                 99****************9877332223334579*********999999888775526778888888.**************99998765432333333 PP

     DUF3361  97 vt....lesLiehLqssnqe 112
                  t    +esL ++L+++++ 
  CCD22935.1 267 RTgfekIESLKDRLNEDDYL 286
                 33444567777777666665 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.3    0.0003      0.41      43     116 ..      47     120 ..      42     121 .. 0.82
   2 !   15.5   1.2     1e-05     0.014      37     116 ..      84     165 ..      77     166 .. 0.82
   3 !    7.4   0.6    0.0032       4.5      45     116 ..     135     165 ..     121     208 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0003
  V-ATPase_H_C  43 llkkLikll.eeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkllvqn 116
                   l+k+ i++l + + d  +  va+ + ++l+++l++ ++ +e++k  + i+++l+ ed e++  AL  + + +++n
    CCD22935.1  47 LMKQSIEVLmNPDVDVDTKLVAIDNFEMLIENLDNANN-IENMKLWDPILKILDFEDLELRAAALSIIGTAVQNN 120
                   67777777723333568999************988766.689***********************9999888765 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1e-05
  V-ATPase_H_C  37 eeknfkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklka.Kekimellehe..deevkyeALkavqkllvqn 116
                   + +n+kl   ++k+l+  +d +  a al+ ig  v++  ++++  +k+++  +k+++l++++  + +v+ +AL a+++l+ +n
    CCD22935.1  84 NIENMKLWDPILKILD-FEDLELRAAALSIIGTAVQNNVNSQNNFSKYDGsLNKVIALVNDKnqNLNVRIKALYALSNLVRNN 165
                   335679999999***4.7888999*******************9999988678999999977335679**********99876 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0032
  V-ATPase_H_C  45 kkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkllvqn 116
                   +k+i+l+++++++                                          +v+ +AL a+++l+ +n
    CCD22935.1 135 NKVIALVNDKNQN-----------------------------------------LNVRIKALYALSNLVRNN 165
                   3444444333333.........................................334445555554444433 PP

>> DUF4704  Domain of unknown function (DUF4704)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.69   9.5e+02      52      86 ..     100     134 ..      75     152 .. 0.68
   2 !   14.1   0.4   1.5e-05      0.02      48     126 ..     141     219 ..     127     232 .. 0.82
   3 ?    1.2   0.1      0.13   1.8e+02      52     239 ..     235     263 ..     218     280 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.69
     DUF4704  52 eadpslcatllsliaelleasstnqqqlvqtkGfl 86 
                  +d +l a  ls+i   ++++ ++q+++ +  G l
  CCD22935.1 100 FEDLELRAAALSIIGTAVQNNVNSQNNFSKYDGSL 134
                 56667777777888888888888887777776654 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.5e-05
     DUF4704  48 vsdseadpslcatllsliaelleasstnqqqlvqtkGflvlaflLqkvspk.hLtrevleallslakvlkelnssaskvL 126
                 v+d++++ ++ ++ l  + +l+++++++  ++ + +G+ +++ +L++ s k +L+++ ++ l+ +++++  +n    ++L
  CCD22935.1 141 VNDKNQNLNVRIKALYALSNLVRNNKEIATEFEKLNGLDIISPILKDESAKtKLKMRAIALLTAFLTSVD-INDDLISLL 219
                 567777788888889999***************************9877666***********9999998.554444444 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.13
     DUF4704  52 eadpslcatllsliaelleasstnqqqlvqtkGflvlaflLqkvspkhLtrevleallslakvlkelnssaskvLlrdlldkvlfnpklWiyadveVQk 150
                 e d +l                                                                                             
  CCD22935.1 235 EIDLNLIDR------------------------------------------------------------------------------------------ 243
                 444444444.......................................................................................... PP

     DUF4704 151 kLyqfLatefledesilknvrrvstvlrlldtlkyyYwvvnprsrsgiesksldgerpsqeeilklRallLllikqlvlkgsgisedel 239
                                                                                      +L l+ ql+  g + +edel
  CCD22935.1 244 ---------------------------------------------------------------------VLNLLAQLIAAGIKFNEDEL 263
                 .....................................................................45555555555555555555 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   1.3     1e-05     0.014       2      70 ..     106     175 ..     105     195 .. 0.89
   2 ?    9.9   0.1   0.00051      0.71       4      77 ..     153     226 ..     150     243 .. 0.87
   3 ?   -0.7   0.0       1.1   1.5e+03      62      74 ..     211     223 ..     174     271 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-05
  Atx10homo_assoc   2 Krelvrllgnlvyknkevqdkvreldg.leliLsqcniDdnnPfirewailairnLlegneenqelvaeL 70 
                      ++  ++++g++v +n + q+++ + dg l+ ++  +n  ++n  +r  a++a+ nL+ +n+e     ++L
       CCD22935.1 106 RAAALSIIGTAVQNNVNSQNNFSKYDGsLNKVIALVNDKNQNLNVRIKALYALSNLVRNNKEIATEFEKL 175
                      677899********************99*****999999999999***************9966655555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00051
  Atx10homo_assoc   4 elvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLeakgvvd 77 
                      + +  l+nlv +nke+  ++ +l+gl +i    + ++ +  ++ +ai  +   l +   n +l++ L++ g+ +
       CCD22935.1 153 KALYALSNLVRNNKEIATEFEKLNGLDIISPILKDESAKTKLKMRAIALLTAFLTSVDINDDLISLLRKDGILE 226
                      667789********************9998888888889999*************9999999999999988754 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.1
  Atx10homo_assoc  62 enqelvaeLeakg 74 
                       n +l++ L++ g
       CCD22935.1 211 INDDLISLLRKDG 223
                      3333333333333 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0022         3      98     152 ..      65     118 ..      61     138 .. 0.81
   2 ?   -1.6   0.0       1.1   1.6e+03     129     153 ..     138     164 ..     133     179 .. 0.81
   3 ?    6.0   0.2    0.0054       7.4     125     165 ..     181     224 ..     178     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0022
        Tti2  98 dlkaisvlawiirqlqskeieanwplivPpiLnllDdtdtsvKlrGlklLqtlle 152
                 +l ai+ ++++i++l++ +  +n++l   piL++lD +d ++++ +l+++ t ++
  CCD22935.1  65 KLVAIDNFEMLIENLDNANNIENMKL-WDPILKILDFEDLELRAAALSIIGTAVQ 118
                 56789999999999999954455555.467******************9988665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
        Tti2 129 LnllDdtd..tsvKlrGlklLqtllek 153
                 ++l++d++   +v++++l  L++l+ +
  CCD22935.1 138 IALVNDKNqnLNVRIKALYALSNLVRN 164
                 567777776789999999999999865 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0054
        Tti2 125 vPpiLnllDdtd.tsvKlrGlklLqtlleklessk....llkrtGL 165
                 ++piL+  D++  t++K r++ lL+ +l +++ ++    ll++ G+
  CCD22935.1 181 ISPILK--DESAkTKLKMRAIALLTAFLTSVDINDdlisLLRKDGI 224
                 555655..44335******************998888877776665 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.47   6.5e+02      70      89 ..      86     105 ..      76     114 .. 0.84
   2 ?    9.9   0.1   0.00048      0.67      13      86 ..     134     213 ..     124     254 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.47
         UME  70 aalsvWatllsnlededlep 89 
                 + ++ W+  l++l+ edle 
  CCD22935.1  86 ENMKLWDPILKILDFEDLEL 105
                 56899***********9985 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00048
         UME  13 lseklndshgkk.slaekkraikaleeliklagssissalpq.....imacLqsaleidelrsaalsvWatllsnleded 86 
                 l++++  ++ k+  l+ +++a++al+ l++  ++ ++ +        i+ +L++  ++ +l+  a+    ++l++++++d
  CCD22935.1 134 LNKVIALVNDKNqNLNVRIKALYALSNLVRNNKEIATEFEKLngldiISPILKDESAKTKLKMRAIALLTAFLTSVDIND 213
                 55666656665558999*************9887766665524444489**************************98765 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.5    0.0013       1.7       3      55 .]     105     161 ..     103     161 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0013
     HEAT_EZ   3 vRraAawaLGrlaggepellqp..lvpeilpaLlalLnddsd..eVRaaAagaLgnl 55 
                 +R+aA++ +G++ +++ + ++     +  l   +al nd+++  +VR +A++aL+nl
  CCD22935.1 105 LRAAALSIIGTAVQNNVNSQNNfsKYDGSLNKVIALVNDKNQnlNVRIKALYALSNL 161
                 5667777777744444444333222334555667888899998999*********97 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.37     5e+02      11      28 ..      99     117 ..      90     119 .. 0.75
   2 ?    7.9   0.0    0.0031       4.3       5      29 ..     137     163 ..     134     164 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.37
                 -.SSHHHHHHHHHHHHHHH CS
        HEAT  11 D.pspeVReaAakaLgala 28 
                 D ++ e R+aA+  +g+ +
  CCD22935.1  99 DfEDLELRAAALSIIGTAV 117
                 5578899*****9999755 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0031
                 HHHHHT-..SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsD..pspeVReaAakaLgalae 29 
                 ++ l +D  ++ +VR  A++aL +l++
  CCD22935.1 137 VIALVNDknQNLNVRIKALYALSNLVR 163
                 6777788889999***********986 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.6     5e+03      16      34 ..      93     111 ..      92     114 .. 0.79
   2 ?    6.5   0.1    0.0065       8.9      17      41 .]     137     163 ..     131     163 .. 0.84
   3 ?    2.7   0.0      0.11   1.5e+02       1      23 [.     212     234 ..     212     244 .. 0.89
   4 ?   -2.3   0.0       3.9   5.4e+03       9      22 ..     236     249 ..     234     251 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.6
                 HHHHHTTTSSHHHHHHHHH CS
         Arm  16 pLvrLLssedeevqeeAaw 34 
                 p ++ L+ ed e++ +A++
  CCD22935.1  93 PILKILDFEDLELRAAALS 111
                 6788889999999999986 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0065
                 HHHHTT..TSSHHHHHHHHHHHHHHTT CS
         Arm  17 LvrLLs..sedeevqeeAawALsNLaa 41 
                  ++L +  +++ +v+  A+ ALsNL +
  CCD22935.1 137 VIALVNdkNQNLNVRIKALYALSNLVR 163
                 5778888899***************76 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.11
                 SHHHHHHHHHTTHHHHHHHHTTT CS
         Arm   1 nsenkdavieaGavppLvrLLss 23 
                 n++ + ++++ G+++  +++L++
  CCD22935.1 212 NDDLISLLRKDGILETTINCLNT 234
                 68999***************985 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 3.9
                 HHTTHHHHHHHHTT CS
         Arm   9 ieaGavppLvrLLs 22 
                 i+++ +++ ++LL 
  CCD22935.1 236 IDLNLIDRVLNLLA 249
                 78899999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2098.31
//
Query:       CCD22936.1  [L=781]
Description: hypothetical protein NDAI_0A07820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-67  227.2  10.3    1.7e-67  227.2  10.3    2.3  2  Exo84_C          Exocyst component 84 C-terminal
    2.7e-10   40.2   1.9    2.7e-10   40.2   1.9    3.4  4  Vps51            Vps51/Vps67
    3.8e-05   23.8   1.2    3.8e-05   23.8   1.2    2.9  3  COG2             COG (conserved oligomeric Golgi) complex com
  ------ inclusion threshold ------
      0.082   13.1  13.2      0.044   13.9   0.9    3.6  4  COG5             Golgi transport complex subunit 5
       0.18   11.7   0.3       0.63   10.0   0.3    1.9  1  CHAD             CHAD domain
       0.69    9.8   4.6        1.1    9.2   0.8    2.5  2  XH               XH domain
        1.3    9.2   4.4        3.3    7.8   0.1    3.1  3  Cob_adeno_trans  Cobalamin adenosyltransferase
        3.7    8.1  10.8         12    6.5   0.1    3.9  4  HSCB_C           HSCB C-terminal oligomerisation domain
        9.2    6.7   8.7        2.4    8.6   4.2    2.2  2  SIT              SHP2-interacting transmembrane adaptor prote


Domain annotation for each model (and alignments):
>> Exo84_C  Exocyst component 84 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.5      0.37   7.3e+02      39      98 ..     178     242 ..     168     261 .. 0.54
   2 !  227.2  10.3   8.7e-71   1.7e-67       2     205 .]     558     766 ..     557     766 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.37
     Exo84_C  39 klkdeeavlqdlislkveqrreelasklsrellsk.nevkk....lksnvslLirLgledkArel 98 
                 +l++ +a+  d  +++++++ e ++++++r+++++ +e++     l+ +v+ L rL  + kA+  
  CCD22936.1 178 NLTEANALDIDKFTSNLTNLSEYVQEEIKRNINDSyHEIMDvnkdLSIAVEELKRLRINIKALGE 242
                 55555555555556666666666666666666422133333000244456667777766666654 PP

  == domain 2  score: 227.2 bits;  conditional E-value: 8.7e-71
     Exo84_C   2 wvedlldeldieiarrkFeeAVdlleklesklkklskklk.deeavlqdlislkveqrreelasklsrell.sknevkklksnvslLirLgledkArel 98 
                 +++d+++e+di+++r+kF  AVd+l+++e++l++l ++++ dee++l++++ lk++qrre ++skls+++l s+n+++kl+sn++++i+Lgl++++++l
  CCD22936.1 558 RLDDCIEEVDIKLTRLKFAVAVDTLQTVENQLTQLVDNMNnDEEMMLYNVLILKIQQRREVIISKLSTSILfSNNDITKLTSNIKTMIKLGLPEQSLDL 656
                 79************************************985799**************************76999************************ PP

     Exo84_C  99 fLenrsnliqkrirqikfegdlslYitqlavvrFtlikntveefqecFkenks...kmsSalvkWakeevdkfvkllerqllndeklseecikiarkqa 194
                 fL+nr+nliq++i+qi+  +++++Y++qlavvrF++i++t+ +f+++F++++s   k+sS+lv+W++eev+k++kl+e+ llndekls+ +ik++rkq+
  CCD22936.1 657 FLNNRTNLIQDLILQIGAVDNSTNYLIQLAVVRFQTINQTILKFEDIFRKESScdnKISSILVSWCNEEVNKHFKLIEKYLLNDEKLSPIAIKATRKQL 755
                 *************************************************99655559****************************************** PP

     Exo84_C 195 deLkevGLDfv 205
                 d+Lk+vGLDfv
  CCD22936.1 756 DDLKSVGLDFV 766
                 *********96 PP

>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   1.9   1.4e-13   2.7e-10       1      85 [.     164     248 ..     164     249 .. 0.97
   2 ?   -1.9   0.0       1.9   3.7e+03      65      84 ..     547     566 ..     539     569 .. 0.75
   3 ?    0.0   0.1      0.46   9.1e+02      21      41 ..     579     599 ..     566     606 .. 0.77
   4 ?   -3.5   0.1       5.8   1.2e+04      59      68 ..     633     642 ..     620     646 .. 0.45

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.4e-13
       Vps51   1 ldspdfdaeayvrellakstlkellkveasllseiraldselkalVydnYskLisasdtIrkmksemdkldqklselkqaiskia 85 
                 l++p+f+a+ +v+e l++++  +++k+ ++l+   +  ++e+k+++ d+Y++ ++++++++   +e++ l+ +++ l++++++++
  CCD22936.1 164 LSDPKFNAKNFVNENLTEANALDIDKFTSNLTNLSEYVQEEIKRNINDSYHEIMDVNKDLSIAVEELKRLRINIKALGEVMERFE 248
                 689******************************************************************************9875 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.9
       Vps51  65 semdkldqklselkqaiski 84 
                 + m++++q+l+ l++ i+++
  CCD22936.1 547 NGMSSIAQQLKRLDDCIEEV 566
                 56888888888888887766 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.46
       Vps51  21 lkellkveasllseiraldse 41 
                 +++l+ ve++l++   +++++
  CCD22936.1 579 VDTLQTVENQLTQLVDNMNND 599
                 578889999999988888877 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 5.8
       Vps51  59 tIrkmksemd 68 
                 +I k+ s+++
  CCD22936.1 633 DITKLTSNIK 642
                 3333333332 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   1.2   1.9e-08   3.8e-05      10      89 ..     166     248 ..     139     263 .. 0.84
   2 ?    3.0   1.2     0.052     1e+02      59     117 ..     551     607 ..     548     626 .. 0.71
   3 ?   -2.5   0.1       2.5     5e+03      23      61 ..     695     733 ..     687     760 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.9e-08
        COG2  10 vpdFdpdqFvse.lr..hgvpLeslrrdLeaylkllekellelvnedyadFvslSghLvglqeeleevesplaaarkkvesvr 89 
                  p+F+  +Fv+e l   ++ ++++  ++L + ++++++e+ + +n+ y++ +++ + L    eel++++ +++a+ + +e ++
  CCD22936.1 166 DPKFNAKNFVNEnLTeaNALDIDKFTSNLTNLSEYVQEEIKRNINDSYHEIMDVNKDLSIAVEELKRLRINIKALGEVMERFE 248
                 589999999999865115567789**********************************************9998877766654 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.052
        COG2  59 slSghLvglqeeleevesplaaarkkvesvreklsereeeveskleeakeleekrellk 117
                 s+ ++L+ l++ +eev+ +l++++  v  +++ l+  e+++++ +++ ++ ee+  +  
  CCD22936.1 551 SIAQQLKRLDDCIEEVDIKLTRLKFAV--AVDTLQTVENQLTQLVDNMNNDEEMMLYNV 607
                 5778999999*****999999886555..678888888888888887777666653333 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.5
        COG2  23 rhgvpLeslrrdLeaylkllekellelvnedyadFvslS 61 
                 ++  ++e++ r   + ++++++ l++  ne+++  ++l 
  CCD22936.1 695 QTILKFEDIFRKESSCDNKISSILVSWCNEEVNKHFKLI 733
                 555566666666677777888888888888888866664 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1         9   1.8e+04      98     111 ..      49      62 ..      48      66 .. 0.79
   2 ?   13.9   0.9   2.2e-05     0.044       5      92 ..     166     248 ..     163     254 .. 0.94
   3 ?    6.4   0.3    0.0048       9.6      21      64 ..     542     585 ..     527     598 .. 0.77
   4 ?   -1.8   0.1       1.7   3.4e+03      23      68 ..     597     642 ..     587     649 .. 0.51

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 9
                 HHHHHHHHHHHHHH CS
        COG5  98 pyeeaeklqsalkr 111
                 py+++ + q+++++
  CCD22936.1  49 PYANLGQQQQQQQQ 62 
                 99999999988876 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.2e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5   5 epdFdpksfanallkatnnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslssvlselksslesLsasyerlk 92 
                 +p F++k+f n+ l      + + ld++   + l+   + ++++++++i++++ e+++  ++ + + + l+ l+ ++++L + +er +
  CCD22936.1 166 DPKFNAKNFVNENLT-----EANALDIDKFTSNLTNLSEYVQEEIKRNINDSYHEIMDVNKDLSIAVEELKRLRINIKALGEVMERFE 248
                 789***********9.....8889*********************************99999999999****************9976 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0048
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  21 tnnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehl 64 
                 + + ++  ++++ +lkrl  +i+e+d +l++l  + + + l+ +
  CCD22936.1 542 ARSRSNGMSSIAQQLKRLDDCIEEVDIKLTRLKFAVAVDTLQTV 585
                 455666778999***************99988666665555555 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.7
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  23 nnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlsksk 68 
                 nnd++ +  ++ + ++++  + + ++l + i  + +++++ +s++k
  CCD22936.1 597 NNDEEMMLYNVLILKIQQRREVIISKLSTSILFSNNDITKLTSNIK 642
                 4444444444555555555555555555555555555555444444 PP

>> CHAD  CHAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00032      0.63     138     198 ..     170     256 ..      20     263 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00032
                 -...........................TSBHHHHHHHHHHHHHHHH.HHHH--------THHHHHHHHHHHHHHHHHHHHGGGS-H..H CS
        CHAD 138 e...........................aepaaaalekrlrkayrklekraakaeadesdeealHelRkaaKrlRYaaeafaplypa..a 198
                 +                           +e +++++++ ++++y +++   ++    +   e+l +lR+ +K l   +e f+ ++++  +
  CCD22936.1 170 NaknfvnenlteanaldidkftsnltnlSEYVQEEIKRNINDSYHEIMDVNKDL---SIAVEELKRLRINIKALGEVMERFETIAKNrlD 256
                 0444444444444444455555555555556678999999*****994444444...678*******************99877766444 PP

>> XH  XH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.8   0.00053       1.1      17     112 ..     142     239 ..     135     256 .. 0.79
   2 ?    1.1   0.2      0.17   3.5e+02      58      91 ..     561     594 ..     549     616 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00053
          XH  17 kklseeeaeekaaelcslWqeeikdpkwhPfkvvevdgkekev..ideddekLkeLkeeyGeevykaVtkallelneynpsgryivselWnfkegrkA 112
                 ++  ++e + +++   ++  + ++dpk++  + v+++ +e +   id+  ++L++L e + ee+ + ++++  e+ ++n++ +  v+el  ++ + kA
  CCD22936.1 142 NRQMKKESQLSKMSQPKTLRHILSDPKFNAKNFVNENLTEANAldIDKFTSNLTNLSEYVQEEIKRNINDSYHEIMDVNKDLSIAVEELKRLRINIKA 239
                 455567777778888888888899999998888877777666611556679*************************************9888888887 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.17
          XH  58 evideddekLkeLkeeyGeevykaVtkallelne 91 
                 + i+e d kL++Lk  +  +  + V++ l++l +
  CCD22936.1 561 DCIEEVDIKLTRLKFAVAVDTLQTVENQLTQLVD 594
                 7899*********************999988754 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0016       3.3      31     116 ..     186     269 ..     177     273 .. 0.82
   2 ?   -3.5   0.0       5.2     1e+04      79     110 ..     341     370 ..     304     375 .. 0.53
   3 ?    1.4   0.2      0.15     3e+02      50      74 ..     556     580 ..     523     663 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0016
                      HHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHH.HHS--EESEEES-SSHH CS
  Cob_adeno_trans  31 tvDelnsaiglarallaeeeeelkeaLeeiqneLfdlgaelatpekkkekkkiteeeveelekeidele.aelpplksfilpggspa 116
                      ++D++ s +  + +++   +ee+k+ +++  +e++d+ ++l++  ++ ++ +i+ +++ e+ ++++++  ++l+  +s   pggs  
       CCD22936.1 186 DIDKFTSNLTNLSEYV---QEEIKRNINDSYHEIMDVNKDLSIAVEELKRLRINIKALGEVMERFETIAkNRLDLEASIKTPGGSSG 269
                      6899999999999777...578*******************9998888999999555888777777776588888888999998765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.2
                      CG-S--HHHHHHHHHHHHHHHHHS--EESEEE CS
  Cob_adeno_trans  79 ekkkiteeeveelekeideleaelpplksfil 110
                        +++  e+ +++e +i++l++ ++++k fil
       CCD22936.1 341 G-RHLLLESNDWMELNINTLKS-FQNVKFFIL 370
                      2.23332225777777777765.555666766 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.15
                      THHHHHHHHHHHHHHHHHHHHHHT. CS
  Cob_adeno_trans  50 eeelkeaLeeiqneLfdlgaelatp 74 
                       ++l++ +ee+  +L +l  ++a++
       CCD22936.1 556 LKRLDDCIEEVDIKLTRLKFAVAVD 580
                      3445555555555555555555544 PP

>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   1.5     0.011        22      13      67 ..     176     235 ..     175     244 .. 0.77
   2 ?    6.5   0.1    0.0061        12      19      50 ..     446     475 ..     435     490 .. 0.80
   3 ?   -2.2   0.0         3   5.9e+03      40      66 ..     553     574 ..     546     586 .. 0.56
   4 ?   -1.8   0.1       2.4   4.7e+03      32      48 ..     609     625 ..     559     642 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.011
                 HHHHHCGGGSSSH....HHHHHHHHHHHHHHHHHHHHHHHHH..HTT-HHHHHHHHHHHHH CS
      HSCB_C  13 rEeleeaeeaadk....eeleelkaeveerieeleaeleeaf..ekkdleaaadllrrlrY 67 
                 +E+l ea +a d     + l +l++ v+e+i+  ++   +++   +kdl+ a ++l rlr 
  CCD22936.1 176 NENLTEA-NALDIdkftSNLTNLSEYVQEEIKRNINDSYHEImdVNKDLSIAVEELKRLRI 235
                 8999999.332335566889999999999999988888888865344************95 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0061
                 GGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      HSCB_C  19 aeeaadkeeleelkaeveerieeleaeleeaf 50 
                 a  ++d  ++ ++++e++++i+e+ + l+++ 
  CCD22936.1 446 A--KDDLCDIFQIEQENSQKIKESFKYLQSQN 475
                 3..3466999***************9999885 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
      HSCB_C  40 eeleaeleeafekkdleaaadllrrlr 66 
                 ++++++l++++     e++   l rl+
  CCD22936.1 553 AQQLKRLDDCI-----EEVDIKLTRLK 574
                 44444444444.....33444444444 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHHHHHH CS
      HSCB_C  32 kaeveerieeleaelee 48 
                   ++++r+e ++++l++
  CCD22936.1 609 ILKIQQRREVIISKLST 625
                 33455555555555555 PP

>> SIT  SHP2-interacting transmembrane adaptor protein, SIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.2    0.0012       2.4      29      93 ..      23      86 ..      13     105 .. 0.72
   2 ?   -1.3   0.1       1.5     3e+03      76     102 ..     471     497 ..     439     499 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
         SIT 29 kkaaeysseqisredeevlqPieddicYanLnlqqtgtspesseekcyeqmkssaqrsqneveyv 93
                k+ ++ + +   +++++++ P+++   YanL +qq+ +++++s+ ++y++  +   + +n+v ++
  CCD22936.1 23 KQPQTPTTKSSVTSSPSKTKPTKKKNPYANLGQQQQ-QQQQTSTSNAYSELPTVDRKAKNKVATS 86
                332222222234667778889999999******997.88899999***99988887777777654 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
         SIT  76 yeqmkssaqrsqneveyvtmaplpreq 102
                  ++ +++++++ ++ e vt  p++r++
  CCD22936.1 471 LQSQNQQTPSHPGNRESVTKSPIKRQS 497
                 333445555666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2025  (0.112946); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 4947.59
//
Query:       CCD22937.1  [L=650]
Description: hypothetical protein NDAI_0A07830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-21   76.1  13.5    1.4e-06   28.9   0.0    5.9  6  WD40            WD domain, G-beta repeat
      1e-13   51.3   7.6    3.9e-05   23.9   0.1    6.7  7  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom
    3.9e-06   26.4   7.6     0.0051   16.2   1.0    3.7  4  WD40_like       WD40-like domain
      1e-05   25.3   0.2    2.8e-05   23.9   0.2    1.8  1  LisH            LisH
    0.00027   20.6   6.9    0.00027   20.6   6.9    2.0  2  Spt20           Spt20 family
    0.00053   19.9   5.8       0.19   11.6   0.2    4.7  4  eIF2A           Eukaryotic translation initiation factor eIF2
  ------ inclusion threshold ------
       0.17   11.1   0.0       0.17   11.1   0.0    3.2  3  RAB3GAP2_N      Rab3 GTPase-activating protein regulatory sub
        4.8    5.9   6.6        7.7    5.2   6.6    1.2  1  Androgen_recep  Androgen receptor
        7.6    5.2   9.2         12    4.6   9.2    1.2  1  Presenilin      Presenilin


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.5e-08     3e-05       7      38 .]     274     307 ..     266     307 .. 0.85
   2 ?    5.3   0.3     0.019        39       4      38 .]     313     348 ..     310     348 .. 0.85
   3 !   28.9   0.0   7.2e-10   1.4e-06       3      37 ..     423     459 ..     421     460 .. 0.89
   4 !   21.2   0.7   1.9e-07   0.00037       3      38 .]     466     501 ..     464     501 .. 0.78
   5 ?   -0.8   0.0       1.7   3.5e+03      19      38 .]     525     543 ..     513     543 .. 0.76
   6 ?   -1.2   0.1       2.2   4.4e+03      12      28 ..     621     639 ..     614     647 .. 0.72

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 1.5e-08
                 EESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ss.vtslafspdgawlasGsdDgtvriWd 38 
                 ++G  ++ vt+l++sp+g+++++G ++g +r+W+
  CCD22937.1 274 ISGKeTNmVTCLSWSPNGKLIITGVENGELRLWN 307
                 55554347****************99*******8 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.019
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + ++  H ss+ s++++ d+  ++s + D+   +W+
  CCD22937.1 313 QNVFNFHrSSILSIKWNEDSIHFLSIDADNVTILWN 348
                 667889*999************99547799988887 PP

  == domain 3  score: 28.9 bits;  conditional E-value: 7.2e-10
                 EEEEEESSSS.EEEEEEETTSSEEEEEET.TSEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsd.DgtvriW 37 
                 ++++ltGH++ +++++f+p++++l+s+sd D ++r+W
  CCD22937.1 423 PIGKLTGHQGlISCIKFNPENKLLVSASDkDFSIRVW 459
                 7889****6679*************99855******* PP

  == domain 4  score: 21.2 bits;  conditional E-value: 1.9e-07
                 EEEEEESS.SSEEEEEEETTSSE.....EEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgaw.....lasGsdDgtvriWd 38 
                 c   + GH +s+ s+       w     l+s+s+Dgtvr+W+
  CCD22937.1 466 CCNLFNGHsQSIVSV------EWinkdlLISSSMDGTVRVWS 501
                 566689**8778899......6666665678999*******5 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.7
                 ETTSSEEEEEETTSEEEEEE CS
        WD40  19 spdgawlasGsdDgtvriWd 38 
                 ++++++++ G  +gt+ i+d
  CCD22937.1 525 NDSKKYVV-GFINGTIQIYD 543
                 55667776.999*****998 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 2.2
                 S..EEEEEEETTSSEEEEE CS
        WD40  12 s..vtslafspdgawlasG 28 
                 +  + +++++++ + +a +
  CCD22937.1 621 DdiIFDISWDKNDDKIAIA 639
                 255799*9**999998765 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.066   1.3e+02      39      75 ..     216     253 ..     196     264 .. 0.78
   2 !   23.9   0.1     2e-08   3.9e-05      35      91 ..     276     330 ..     269     331 .. 0.90
   3 !    8.0   0.1    0.0018       3.6      27      82 ..     313     364 ..     309     387 .. 0.87
   4 !   12.1   0.1   8.9e-05      0.18      23      90 ..     416     483 ..     410     485 .. 0.85
   5 ?    5.0   0.2     0.015        29      35      73 ..     471     508 ..     457     515 .. 0.78
   6 ?    5.0   0.0     0.015        31       7      74 ..     485     551 ..     483     571 .. 0.78
   7 ?    2.9   0.0     0.066   1.3e+02      37      62 ..     620     645 ..     613     650 .] 0.81

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.066
  ANAPC4_WD40  39 sevrsLaWkpd.gklLavaysdgevrlldaesgkvvhs 75 
                   ++ +  W++  ++lLa + +d++ ++++ e+ + +  
   CCD22937.1 216 TNILNSDWNKTiDNLLAYGQEDSTAKIIEFETMTGIDD 253
                  55666667654399***************999776655 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 2e-08
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                   ke + v++L+W+p+gkl+  ++++ge+rl +  +g + + ++ ++++ + +++W+e
   CCD22937.1 276 GKETNMVTCLSWSPNGKLIITGVENGELRLWN-DNGLLQNVFNFHRSS-ILSIKWNE 330
                  578899************************98.789999999999995.******87 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0018
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                  q+v+++    + s++ s++W++d   +    +d+   l +a +g v+++++ k+++
   CCD22937.1 313 QNVFNF----HRSSILSIKWNEDSIHFLSIDADNVTILWNALNGIVLEHFEPKKQQ 364
                  556666....7899**********9999999*******************999876 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 8.9e-05
  ANAPC4_WD40  23 RlngqrvwtleedkedsevrsLaWkpdgklLavaysdg.evrlldaesgkvvhslsvksekavtclgWg 90 
                  R++ ++v  ++ +++++ +++++++p++klL+ a ++  ++r+ +  + ++ + ++ +s++ +++++W 
   CCD22937.1 416 RTKDHQVPIGKLTGHQGLISCIKFNPENKLLVSASDKDfSIRVWHGGNSNCCNLFNGHSQS-IVSVEWI 483
                  66666666666788999***************9876555*******************995.******6 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.015
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                  +++++++ s++W ++  lL  +  dg+vr+ ++es  +v
   CCD22937.1 471 NGHSQSIVSVEWINK-DLLISSSMDGTVRVWSIESNGLV 508
                  46788999****766.58889999*********997665 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.015
  ANAPC4_WD40   7 mDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvh 74 
                  +DL+   + dg ++v  ++ + +++l +  ++  + + a ++d k  +v++ +g+++++d    +++ 
   CCD22937.1 485 KDLLISSSMDGTVRVWSIESNGLVGL-SMLKGIPILCSAMSNDSKKYVVGFINGTIQIYDLTVLQTIL 551
                  57777777777777777777777777.677888888889999999999**********9987666554 PP

  == domain 7  score: 2.9 bits;  conditional E-value: 0.066
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgev 62 
                  +d  + +++W +++  +a+ays+ + 
   CCD22937.1 620 DDDIIFDISWDKNDDKIAIAYSNKKG 645
                  56667899**************9765 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.062   1.2e+02      12      40 ..     228     256 ..     216     261 .. 0.78
   2 !    9.8   0.0   0.00023      0.46      92     140 ..     291     339 ..     275     352 .. 0.86
   3 ?   -1.8   0.0      0.78   1.5e+03      50      77 ..     384     411 ..     355     420 .. 0.74
   4 !   16.2   1.0   2.6e-06    0.0051       6     117 ..     437     551 ..     433     570 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.062
   WD40_like  12 gslilyGgkddkctvlkleslesvsives 40 
                  +l++yG +d +++++++e+ + +  + +
  CCD22937.1 228 DNLLAYGQEDSTAKIIEFETMTGIDDISK 256
                 5799****************988876655 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00023
   WD40_like  92 ddklliGtnkGsiyvfskdlqleevllgqsseIkeikiennkiysLses 140
                 ++ ++ G ++G++ +++ +  l++v+  + s I++ik +++ i+ Ls +
  CCD22937.1 291 GKLIITGVENGELRLWNDNGLLQNVFNFHRSSILSIKWNEDSIHFLSID 339
                 4567779************************************999854 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.78
   WD40_like  50 lldddlilvvtlDGtillslleneeeve 77 
                  +d+d++++  + Gt+l + ++ +  ++
  CCD22937.1 384 WVDKDKFVIPGINGTMLVYSMNDGGDIS 411
                 4566777777777777777777666554 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 2.6e-06
   WD40_like   6 idiskkgslilyGg.kddkctvlkleslesvsivesfedSvifvklldddlilvvtlDGtillslleneeevenekiee...distvkviddklliGtn 100
                 i ++++++l++  + kd  ++v +  + +   ++++ ++S++ v+ +++dl++  ++DGt+    +e +  v    ++      s ++++ +k ++G  
  CCD22937.1 437 IKFNPENKLLVSASdKDFSIRVWHGGNSNCCNLFNGHSQSIVSVEWINKDLLISSSMDGTVRVWSIESNGLVGLSMLKGipiLCSAMSNDSKKYVVGFI 535
                 667777776555541555889999999999*******************************9999999998877666642115688999999******* PP

   WD40_like 101 kGsiyvfskdlqleevl 117
                 +G+i +++    l+++l
  CCD22937.1 536 NGTIQIYDLT-VLQTIL 551
                 *******987.444444 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.2   1.4e-08   2.8e-05       1      27 []       6      32 ..       6      32 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.4e-08
                HHHHHHHHHHHHHCT-HHHHHHHHHHT CS
        LisH  1 eeLNrLIydYLvkeGyeetAeaFekEa 27
                eeLN+LI++YL++ G+e t  a+++E+
  CCD22937.1  6 EELNYLIWRYLQEGGHELTSLALQEET 32
                79*********************9997 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   6.9   1.3e-07   0.00027     106     192 ..     114     222 ..      36     259 .. 0.63
   2 ?   -1.7   0.1       0.9   1.8e+03      72     110 ..     524     563 ..     512     620 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.3e-07
       Spt20 106 dqkqsqqnqqqqqqqqqqqqqqqq..................qqeqqqqqnekdsttteekekks..ksknnssksktttkkpk....vyrtLLrptpq 180
                 d+++s++++qqqqqqqqqqqqqqq                  +   ++ ++e+   +t++ ++k+   ++++ ++  + +kk      +  ++ +p+++
  CCD22937.1 114 DDSESKYKEQQQQQQQQQQQQQQQpnekieerekderktfkaE--VANGKKEDIVGSTTSVNEKDveYENKERNEPHKELKKDNlqvvSSNVVFKPLKE 210
                 3333335555555555555555554456676777777666432..333333332222222222220022222222222333322566666667777777 PP

       Spt20 181 slladlqllast 192
                  +  d ++l s+
  CCD22937.1 211 IFQMDTNILNSD 222
                 777777766666 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.9
       Spt20  72 melLrdanikfYeGclIvqvrDhr..nsvaqsqktq.dqkqs 110
                  +  +++ + f +G +  q++D +  +++ q++k + +++++
  CCD22937.1 524 SNDSKKYVVGFINGTI--QIYDLTvlQTILQQRKAKcESENN 563
                 5555677777888888..888876223444433333422222 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.2   9.3e-05      0.19     100     159 ..     279     336 ..     209     355 .. 0.85
   2 ?    3.9   0.1     0.022        43     105     158 ..     436     489 ..     426     507 .. 0.80
   3 ?    2.0   0.0     0.084   1.7e+02      61     143 ..     517     555 ..     490     571 .. 0.61
   4 ?    1.3   0.0      0.14   2.7e+02      58      79 ..     620     641 ..     590     649 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.3e-05
                 EES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT.TTEEEEEEE-TT--EEEE-TTSSEEE CS
       eIF2A 100 eqkrNtiffspkgklvllaGfgnlaGeleiwdvk.kkkkiakaeaanatlvewspdgryvl 159
                 ++   ++ +sp+gkl+++ G    +Gel +w+ +  ++++ +++ +   +++w+ d+ ++l
  CCD22937.1 279 TNMVTCLSWSPNGKLIIT-GVE--NGELRLWNDNgLLQNVFNFHRSSILSIKWNEDSIHFL 336
                 444456789999998875.455..4899999988788999999999999999999998887 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.022
                 EEEE-TTSSEEEEE-TTSSS-EEEEEETT..TTEEEEEEE-TT--EEEE-TTSSEE CS
       eIF2A 105 tiffspkgklvllaGfgnlaGeleiwdvk..kkkkiakaeaanatlvewspdgryv 158
                 +i+f+p++kl++ a  +++  ++ +w     ++ ++ + +++  ++vew +++ ++
  CCD22937.1 436 CIKFNPENKLLVSASDKDF--SIRVWHGGnsNCCNLFNGHSQSIVSVEWINKDLLI 489
                 79*****************..99999876447778888889999999**9887655 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.084
                 .EEEEEE-TTSS-EEEEESSSSCEEEEEECSCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE- CS
       eIF2A  61 pihdvaWspkskefaviyGkmpakvslfdlkvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaea 143
                 pi + a s++sk+++v  G+++ +++++dl+                                           +++i ++++
  CCD22937.1 517 PILCSAMSNDSKKYVV--GFINGTIQIYDLT------------------------------------------VLQTILQQRK 555
                 5566666666666654..6666677777765..........................................3333333332 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.14
                 SSS.EEEEEE-TTSS-EEEEES CS
       eIF2A  58 kegpihdvaWspkskefaviyG 79 
                  +  i d++W+++ +++a+ y 
  CCD22937.1 620 DDDIIFDISWDKNDDKIAIAYS 641
                 456799************9875 PP

>> RAB3GAP2_N  Rab3 GTPase-activating protein regulatory subunit N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   9.5       3.9   7.7e+03     278     297 ..     123     142 ..     113     150 .. 0.47
   2 ?   11.1   0.0   8.6e-05      0.17      63     115 ..     285     333 ..     249     372 .. 0.78
   3 ?    1.9   0.1     0.055   1.1e+02      63      95 ..     516     546 ..     464     558 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 3.9
  RAB3GAP2_N 278 eqqtkkeekkkpkvepaapl 297
                 +qq++++++++++++p +++
  CCD22937.1 123 QQQQQQQQQQQQQQQPNEKI 142
                 22222233333333344443 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.6e-05
  RAB3GAP2_N  63 lplsskssqgspdwtviavGlssGylrfytengelLlsqllheepvlkikcv....s 115
                 l++s        + ++i+ G+++G lr++++ng l     +h++++l+ik +     
  CCD22937.1 285 LSWSP-------NGKLIITGVENGELRLWNDNGLLQNVFNFHRSSILSIK-WnedsI 333
                 44443.......6789**********************************.533332 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.055
  RAB3GAP2_N  63 lplsskssqgspdwtviavGlssGylrfyteng 95 
                 +p+ +  s  s+d++ ++vG+ +G + +y+ + 
  CCD22937.1 516 IPILC--SAMSNDSKKYVVGFINGTIQIYDLTV 546
                 55555..555889999*************9875 PP

>> Androgen_recep  Androgen receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.6    0.0039       7.7     191     245 ..     122     173 ..     109     181 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0039
  Androgen_recep 191 qqqqqehhhqqhqhqqqqqqeaavvedsssgrareaagasasskdnylggtstis 245
                     +qqqq+   qq+q+qqqqq +  + e     r    a  +   k++ +g t+++ 
      CCD22937.1 122 EQQQQQ---QQQQQQQQQQPNEKIEEREKDERKTFKAEVANGKKEDIVGSTTSVN 173
                     333333...4444455555555566666666666666666666666777666655 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   9.2    0.0059        12     229     297 ..     123     180 ..      91     234 .. 0.44

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0059
  Presenilin 229 kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekesee 297
                 +++++++++++++++ +e+++e++k+e+++            + e ++ ++++   s+++ +e++ + e
  CCD22937.1 123 QQQQQQQQQQQQQQQPNEKIEEREKDERKTF-----------KAEVANGKKEDIVGSTTSVNEKDVEYE 180
                 1111111111111111111111111111111...........111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3147  (0.175526); expected 358.6 (0.02)
Passed bias filter:                      971  (0.0541581); expected 358.6 (0.02)
Passed Vit filter:                       176  (0.0098165); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.47
# Mc/sec: 4196.30
//
Query:       CCD22938.1  [L=146]
Description: hypothetical protein NDAI_0A07840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.016   15.2   3.0       0.32   11.1   0.4    2.6  2  zf-C2H2_6     C2H2-type zinc finger
      0.067   13.7   0.8      0.067   13.7   0.8    2.7  2  zf-C2H2       Zinc finger, C2H2 type
       0.35   10.5   3.5       0.42   10.3   3.5    1.1  1  Peptidase_C5  Adenovirus endoprotease


Domain annotation for each model (and alignments):
>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.4   5.3e-05      0.32       2      15 ..      76      89 ..      75      94 .. 0.84
   2 ?    4.0   0.1    0.0085        51       6      18 ..     117     129 ..     116     138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.3e-05
   zf-C2H2_6  2 heCsvCsksFpslq 15
                h Cs+C+ks+p ++
  CCD22938.1 76 HQCSQCLKSLPNQY 89
                99*******99777 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0085
   zf-C2H2_6   6 vCsksFpslqaLg 18 
                 +Cs +F++ q+ +
  CCD22938.1 117 ECSVRFETHQDRI 129
                 8******988755 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.8   1.1e-05     0.067       1      23 []      76      99 ..      76      99 .. 0.94
   2 ?    3.4   3.3     0.021   1.2e+02       2      23 .]     112     136 ..     111     136 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.1e-05
                EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirt.H 23
                ++C+ C ks ++++ L+ Hi   H
  CCD22938.1 76 HQCSQCLKSLPNQYRLQLHIDElH 99
                79******************8877 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.021
                 EET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirt.H 23 
                 +C   +C+ +F +  +  +H+++ H
  CCD22938.1 112 RCFkeECSVRFETHQDRISHLCKiH 136
                 688889***************9999 PP

>> Peptidase_C5  Adenovirus endoprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.5     7e-05      0.42      82     175 ..      38     133 ..      28     137 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7e-05
                   SEEEEEEE-EE-S-TT---HHHHHHHHHHHHHH-TTS-SSSSTTGGGS--EEGGGTTSGGGHHHHHHHHHH..HHHHHHHH-HHHHHTHHHHHHHT CS
  Peptidase_C5  82 rcitleksteavqctcsaacGlfcilflasfarykqkpldgnpvidlvdGvkpsklnspqekellhrnqek..lyaflekksayfrknaeelient 175
                     +t + +t+ + c  s++c  f  + l+ f+  + +  + +  ++ +    + +l+    ++  ++nq+k  l  f e+ s+ f +++ ++ +  
    CCD22938.1  38 SSLTTNTNTNGILCNESSCCNNFIPIELYDFHVSQCHDHQCSQCLKSLPNQYRLQLHIDELHNPFKNNQQKqsLRCFKEECSVRFETHQDRISHLC 133
                   56788999**************************************************99999999998753367899999********9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1124.47
//
Query:       CCD22939.1  [L=316]
Description: hypothetical protein NDAI_0A07850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-58  194.1   1.3    1.3e-20   73.1   0.1    3.0  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.2   1.8e-24   3.2e-20       3      96 ..      31     119 ..      29     120 .. 0.95
   2 !   46.8   0.0   1.2e-16   2.1e-12       4      90 ..     131     213 ..     128     219 .. 0.91
   3 !   73.1   0.1     7e-25   1.3e-20       3      93 ..     226     315 ..     225     316 .] 0.94

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 1.8e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                 ++vlk++laG ++g+ +++v +P+d+ K+r+qt+ ++s++     + ++++k++k+eGl+g+y+G l+ +++v    +++f+++e +kr++ + 
  CCD22939.1  31 TRVLKDILAGTCGGISQVIVGQPFDTTKVRMQTSTSQSTT-----AKEIISKLIKNEGLMGFYKGSLIPIVGVGACVSVQFGVNEAMKRFFHQA 119
                 67899********************************999.....5699*****************************************9875 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 1.2e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                 s+ ++ ++G+++g++++++  P++ v++rlqtq + +k  ++++ +d+++k++ke   ++l rGl p +lr     +++f++ye l+
  CCD22939.1 131 SLKQYYICGLTGGVINSFLSSPIEHVRIRLQTQTGIGKP-EFNGPIDCIRKLLKE---KSLMRGLRPMMLRAGHGLGCYFLTYEALI 213
                 666889******************************987.6677**********9...5889**********************876 PP

  == domain 3  score: 73.1 bits;  conditional E-value: 7e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +s++k +  G+l+g+v +l ++PldvvK ++qt+  ++ k + +++++v+ ++y+++G++++++G++p++lr ap ++++fv++e + r+l
  CCD22939.1 226 ISAWKLCTYGSLSGTVLWLSIYPLDVVKSMIQTDTLRNPKFN-NSMRKVITHLYRTHGISSFFKGFVPTMLRAAPVNGATFVTFECIMRVL 315
                 789999*******************************99855.44*****************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2254.78
//
Query:       CCD22940.1  [L=404]
Description: hypothetical protein NDAI_0A07860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-53  179.6   4.0    5.9e-53  179.0   4.0    1.3  1  Vac_ImportDeg  Vacuolar import and degradation protein


Domain annotation for each model (and alignments):
>> Vac_ImportDeg  Vacuolar import and degradation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.0   4.0   3.3e-57   5.9e-53       1     161 [.     150     376 ..     150     377 .. 0.94

  Alignments for each domain:
  == domain 1  score: 179.0 bits;  conditional E-value: 3.3e-57
  Vac_ImportDeg   1 flrpgakfkGeqqsgkkkyevkvelktvdle......................eslltGfleikglteekpeittffegeiidekysfltk..... 69 
                    fl+p++kfkG q+sg+kky+v vel+tvdl+                      ++++tG+l+ikglt ++peittffe++++++k++f+++     
     CCD22940.1 150 FLKPSMKFKGFQMSGYKKYQVIVELETVDLPisavethdisynqtakslppslTPHMTGHLTIKGLTPQYPEITTFFETYVMNDKFDFFSSnwssn 245
                    79********************************************************************************************** PP

  Vac_ImportDeg  70 .......kkkwkaseetDlehWkkleafkkllak.....................dlenkelifmrwkekflvpde...........rvksiegas 126
                            +++k+ +e+Dl+hW +++ fkkl+ +                     ++ n++++fmrwkek+l++++           + + i+gas
     CCD22940.1 246 nlynddyLQDFKSLDEIDLDHWLNFPIFKKLFLSnnadddknellnrsemdsylkNYLNNRFVFMRWKEKMLLKQQdhdhdyyderdEDDGINGAS 341
                    ******999*********************999999999999999999999999999999*************944345566666656666***** PP

  Vac_ImportDeg 127 feGfYYivldqstgsieGlYyhkksekfqqLeLkp 161
                    f+GfYY+v+dq +gs++G+Yyh+++ekfq++eLkp
     CCD22940.1 342 FDGFYYMVHDQIMGSFNGFYYHEDAEKFQKFELKP 376
                    *********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1121  (0.0625244); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3284.70
//
Query:       CCD22941.1  [L=196]
Description: hypothetical protein NDAI_0A07870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-66  222.2   2.7    3.3e-66  222.0   2.7    1.0  1  Pho88           Phosphate transport (Pho88)
  ------ inclusion threshold ------
       0.27   10.9   1.9       0.36   10.5   1.9    1.3  1  Toxin_R_bind_C  Clostridium neurotoxin, C-terminal receptor b


Domain annotation for each model (and alignments):
>> Pho88  Phosphate transport (Pho88)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.0   2.7   3.7e-70   3.3e-66       1     168 [.       1     170 [.       1     184 [. 0.88

  Alignments for each domain:
  == domain 1  score: 222.0 bits;  conditional E-value: 3.7e-70
       Pho88   1 mnpqvtnlviilvlmqvskkidfedpevllyvRilYvvsqliillvylyikskikkknDlttlkyvepasplskeeeklvttTvkdYDlaelkkllksi 99 
                 mn+qv+n+vi+lv+mq+s++id+e++++++y+R++Y +s +i +l+y++ ++ki ++nD t+lky+++++ +  ++e   +tTvk+YDl+e+++++ks+
  CCD22941.1   1 MNSQVSNIVIMLVMMQASRRIDMENETNIFYIRAAYGTSFIIGFLIYQFARRKIISRNDITELKYKHKEQGT--NKEVEIVTTVKEYDLQEIDAAIKST 97 
                 9****************************************************************8888882..3333459****************** PP

       Pho88 100 lmgvammafmhlymkytnPLllQsimplknllesnlvkihllgkpaegdLkRPFkaaagllgaa.....eaktd 168
                 ++ +amm+fmhlymkytnPL++Qsi+p+k++le+n+v+ihl+ k+a+gdLkRPFk +++l+ ++      a  +
  CCD22941.1  98 FTNLAMMGFMHLYMKYTNPLFMQSISPIKSALEHNEVQIHLFSKAATGDLKRPFK-TPSLMDSFmnagaGATAQ 170
                 *******************************************************.688874433333322222 PP

>> Toxin_R_bind_C  Clostridium neurotoxin, C-terminal receptor binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.9     4e-05      0.36      37     122 ..       4      95 ..       1     132 [. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4e-05
                     EESSTTSSCEEEES-EEEEC..CTTCEEE.-S-S-EEEEEESS.TSSSSSB-BTTEEEEEEEEET....TEEEEEEEETTSSECTCCEEEEE CS
  Toxin_R_bind_C  37 dlknitvyiyllkaprysvg..klniysrrlyrGlkfiikkyapsnekdsivksndrvklyvvvk....nkeyilaypkdqaavekldrile 122
                     ++ ni   +++++a r   +  ++ni++ r   G+ fii     +  + +i+  nd   l+   k    nke  +    ++  ++++d +++
      CCD22941.1   4 QVSNIVIMLVMMQASRRIDMenETNIFYIRAAYGTSFIIGFLIYQFARRKIISRNDITELKYKHKeqgtNKEVEIVTTVKEYDLQEIDAAIK 95 
                     889999999889998877663369***************99888899999999999999887665333366666655566666677776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1530.37
//
Query:       CCD22942.1  [L=190]
Description: hypothetical protein NDAI_0A07880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-15   55.8   0.1      2e-06   28.0   0.0    2.1  2  Fe-S_biosyn  Iron-sulphur cluster biosynthesis
  ------ inclusion threshold ------
      0.095   12.6   0.6         11    6.0   0.2    2.5  2  DUF3797      Domain of unknown function (DUF3797)


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   8.7e-10   7.8e-06       2      59 ..      54     106 ..      53     119 .. 0.84
   2 !   28.0   0.0   2.2e-10     2e-06      56     110 ..     128     181 ..     117     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 8.7e-10
                  EEEE-HHHHHHHHHHHHCTTECEEEEEECCTSCCGGS.TT.EEEEEEEEESSTS...TTTE CS
  Fe-S_biosyn   2 kitlteaAaeklkkllaedkkelrLdvddgggpyskggCsiggkyslvlvdeed...eeyd 59 
                  +i++t+ Aae+l+   +++k+ l ++v+ gg       C+ g++y+l+l++ +d   ++++
   CCD22942.1  54 NIKITDHAAERLNLIYNTSKEILQIGVESGG-------CH-GFQYNLNLIPDPDlqsSKDS 106
                  69***********999997766*********.......**.***********997643332 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 2.2e-10
                  TTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEEETCCEEEEEEEE CS
  Fe-S_biosyn  56 eeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLksdngilddnvglg 110
                  ++   v+  +ggkv+++++sl  l ++  l+f+++l ++++k + g+l++++g+g
   CCD22942.1 128 NDTVYVIPPDGGKVIIDEHSLKIL-NDSILNFTTELIGSQFKIEDGNLKSSCGCG 181
                  677778999***************.99***************************8 PP

>> DUF3797  Domain of unknown function (DUF3797)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0032        29      27      37 ..     137     147 ..     125     151 .. 0.81
   2 ?    6.0   0.2    0.0012        11      21      47 ..     152     183 ..     149     184 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0032
     DUF3797  27 segkviieddt 37 
                  +gkvii++++
  CCD22942.1 137 DGGKVIIDEHS 147
                 79********8 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0012
     DUF3797  21 NnkvlNsegkv.....iieddtfyreCkCgfn 47 
                 N+ +lN   ++      ied   + +C+Cg +
  CCD22942.1 152 NDSILNFTTELigsqfKIEDGNLKSSCGCGSS 183
                 67777776666555558************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1621.02
//
Query:       CCD22943.1  [L=665]
Description: hypothetical protein NDAI_0A07890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-32  111.1   0.4    1.6e-31  108.2   0.0    2.8  2  SRP1_TIP1  Seripauperin and TIP1 family


Domain annotation for each model (and alignments):
>> SRP1_TIP1  Seripauperin and TIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.0   9.2e-36   1.6e-31       2      98 ..      23     121 ..      22     122 .. 0.95
   2 ?   -2.3   0.1      0.27   4.9e+03      52      68 ..     582     598 ..     569     609 .. 0.76

  Alignments for each domain:
  == domain 1  score: 108.2 bits;  conditional E-value: 9.2e-36
   SRP1_TIP1   2 avaaaqteaevaelevllnDvksnlkeYlslakansgfslPsgvlsvyaalatat..ddsYttllseidfaevssmitglPWYssRLepaiesalaseg 98 
                 +++ ++++++++el++++nD++ ++++Yls++ an+++ +Ps+++++++a++  t  ++++ttl+s+i+ ae++smitg+PWYs+RL+pai+++l+++g
  CCD22943.1  23 TLTPDDETVNMIELAIYVNDIHGHMADYLSMQGANPDMPYPSEIMKAVMAILFGTdpNNKFTTLFSTIPPAEITSMITGVPWYSERLQPAISKSLEARG 121
                 678899*********************************************999867899***********************************9986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.27
   SRP1_TIP1  52 latatddsYttllseid 68 
                  +t+t+  Yttl +++ 
  CCD22943.1 582 NTTYTEIIYTTLGKTVT 598
                 57888889999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2519  (0.140499); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                       191  (0.0106531); expected 17.9 (0.001)
Passed Fwd filter:                        63  (0.00351386); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.09u 0.41s 00:00:02.50 Elapsed: 00:00:00.63
# Mc/sec: 3157.77
//
Query:       CCD22944.1  [L=1077]
Description: hypothetical protein NDAI_0A07900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-27   95.4  26.3    2.9e-27   95.4  26.3    8.7  8  AIM3      Altered inheritance of mitochondria protein 3


Domain annotation for each model (and alignments):
>> AIM3  Altered inheritance of mitochondria protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4  26.3   1.6e-31   2.9e-27       1      88 []       9     113 ..       9     113 .. 0.88
   2 ?  -10.0   9.8         1   1.8e+04      40      58 ..     237     254 ..     219     306 .. 0.51
   3 ?   -1.3   1.3      0.24   4.4e+03      73      86 ..     494     507 ..     460     510 .. 0.76
   4 ?    3.0   2.0     0.011   1.9e+02      46      80 ..     569     604 ..     521     612 .. 0.78
   5 ?   -4.0   0.9         1   1.8e+04      58      79 ..     690     711 ..     655     715 .. 0.64
   6 ?   -1.1   4.1      0.21   3.7e+03      48      80 ..     776     808 ..     724     818 .. 0.67
   7 ?    2.5   4.4     0.016   2.8e+02      53      85 ..     857     892 ..     811     895 .. 0.50
   8 ?   -6.6   5.0         1   1.8e+04      75      79 ..    1015    1019 ..     955    1062 .. 0.68

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 1.6e-31
        AIM3   1 kdsiksGlktagKygykGtksvaKsGyqagKkhykkskekreerdgk................ddsdeereededyd.tstsleslrdprsFppPPlkp 82 
                 kdsiksGl++agKygy+Gtk+vaK+Gy+agKkhy++sk+kr++++++                d+  ++++++edy  ++ts+e+l+dprsFppPPlkp
  CCD22944.1   9 KDSIKSGLVSAGKYGYQGTKYVAKTGYTAGKKHYNDSKSKRGGKSSSgnrhrkhkkkkdkddsDSDYSDYSDNEDYRaQPTSVENLKDPRSFPPPPLKP 107
                 8*******************************************9889**********9955433333444455555899******************* PP

        AIM3  83 gqaqyk 88 
                 gq++y+
  CCD22944.1 108 GQQNYT 113
                 ***985 PP

  == domain 2  score: -10.0 bits;  conditional E-value: 1
        AIM3  40 kreerdgkddsdeereede 58 
                  +++++++  ++++++++ 
  CCD22944.1 237 SQQQQQNH-FQQYQQQNQP 254
                 22222111.2222222222 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.24
        AIM3  73 rsFppPPlkpgqaq 86 
                 ++++pPP++++  +
  CCD22944.1 494 SALAPPPTHRDRGN 507
                 6789*****98765 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.011
        AIM3  46 gkddsdeereededydtstsleslrdpr.sFppPPl 80 
                 ++ d+++e+ee++d ++++s++   d+   +ppPP 
  CCD22944.1 569 EEGDEEQEQEESSDVNKNSSISGIYDVTvDLPPPPK 604
                 224566777777788899999999997626888874 PP

  == domain 5  score: -4.0 bits;  conditional E-value: 1
        AIM3  58 edydtstsleslrdprsFppPP 79 
                 ++  +++ l s + +   ppPP
  CCD22944.1 690 DEPPKAAILGSYNVTVDMPPPP 711
                 4444555555555566778887 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 0.21
        AIM3  48 ddsdeereededydtstsleslrdprsFppPPl 80 
                 d++  +++++  +  + +++++   ++F+pPP 
  CCD22944.1 776 DKNVTSSSSSTAETANDNHKNDVPISEFAPPPK 808
                 444444444455555666666777799****74 PP

  == domain 7  score: 2.5 bits;  conditional E-value: 0.016
        AIM3  53 ereededydtstsleslrdp.rsFppPPlk..pgqa 85 
                 + ++++++d+++ +++++++ +sFppPP    ++q+
  CCD22944.1 857 DISNKRKEDHEAFVSKTKSVlSSFPPPPKPhrREQK 892
                 23333344444444444444389****754115554 PP

  == domain 8  score: -6.6 bits;  conditional E-value: 1
        AIM3   75 FppPP 79  
                    +PP
  CCD22944.1 1015 HVAPP 1019
                  33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1077 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2456  (0.136985); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.37u 0.31s 00:00:01.68 Elapsed: 00:00:00.51
# Mc/sec: 6339.22
//
Query:       CCD22945.1  [L=444]
Description: hypothetical protein NDAI_0A07910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-11   43.7   0.0    7.6e-11   41.9   0.0    1.8  2  Glycos_transf_1  Glycosyl transferases group 1
    1.3e-08   35.4   0.0    1.6e-06   28.5   0.0    2.2  2  Glyco_trans_1_4  Glycosyl transferases group 1
    8.2e-07   29.2   0.0    1.2e-06   28.6   0.0    1.3  1  Glyco_transf_4   Glycosyltransferase Family 4
    6.4e-05   23.3   0.0    0.00013   22.3   0.0    1.4  1  Glyco_trans_1_2  Glycosyl transferases group 1
     0.0081   16.6   0.0      0.012   16.0   0.0    1.3  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.33   1.2e+03      69     100 ..      64      95 ..      35     106 .. 0.76
   2 !   41.9   0.0   2.1e-14   7.6e-11       9     169 ..     254     421 ..     247     424 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.33
                      HCTTCGGGEEECCHSSSHHHHHHCESEEEEEE CS
  Glycos_transf_1  69 lelsdnviflgevsredleellknadifvlps 100
                      +el+ +v++ g+v+ +   ++  +++i+++p 
       CCD22945.1  64 AELGWDVELCGYVESSLPSSIVDASNITIHPI 95 
                      67888899999999999999999999999984 PP

  == domain 2  score: 41.9 bits;  conditional E-value: 2.1e-14
                      TTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCC......HCSCEEEEEES.STTHHHHHHHHHHHCTTC.GGGEEECCHSSSHHHHHHCES. CS
  Glycos_transf_1   9 lgknekkkiilsvgrlekeKgvdllikafallkkq......lnpnvklviaGngeeekelkklaeelelsd.nviflgevsredleellknad. 94 
                        + +++ki++++  +++  ++  l+ a++  +          p++ + i G+g+ ++++ ++++e + +  +v+f++ +s ed ++ll+ +d 
       CCD22945.1 254 FDLSKGDKILVTSTSFTPDEDIGILLGALKIYESSyekfdrNLPKILCFITGKGPLKEKYNAQVKEQKWNRcHVEFVWLSS-EDYPKLLQLCDy 346
                      56678999999999*******999999999888779999999********************9998876543888888777.9********764 PP

                      .EEEEEESS.BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTTSEEEE-TT-HHHHHHHHHHHHHSHHHHHHHHHHH CS
  Glycos_transf_1  95 .ifvlpsis.EgfGivllEAmaaglpviasnaggpaevvkdgetGllvkpnnaealaeairklledeelrerlgena 169
                       + +++s s   +++ +l  + +glpvia n++ + e+v++ ++Gl +      ++ e ++ +++d el++rl+++a
       CCD22945.1 347 gVSLHTSSSgLDLPMKILDMFGSGLPVIAMNYPVLDELVTHDVNGLKFSDR--REMHESLIFAMKDAELYKRLRQAA 421
                      478888888889*********************************999988..********************9987 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.012        41      50      88 ..      64     106 ..      34     108 .. 0.69
   2 !   28.5   0.0   4.6e-10   1.6e-06      32     131 ..     299     407 ..     261     410 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.012
                      HTT-T.TEEEE---TH..HHHHHHH-SEEEE--...---SHHHH CS
  Glyco_trans_1_4  50 aagleerveftGfved..laellaaadvfvaPs...egfglkll 88 
                      a +l  +ve++G+ve+   +++++a+++++ P+    g+ +k+l
       CCD22945.1  64 A-ELGWDVELCGYVESslPSSIVDASNITIHPItkrNGMIMKVL 106
                      2.45457*******55568889***********87449999987 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 4.6e-10
                      EEEEEES---...HHHHHHHT..T-T..TEEEE---.THHHHHHHH-SEEEE--...-..--SHHHHHHHHTT-EEEE-TGGGTTT--..TTSS CS
  Glyco_trans_1_4  32 vrlvivGdgp.rpeeleelaa..gle.erveftGfv.edlaellaaadvfvaPs...e..gfglkllEamaaglpvVatdvggiaevv..geng 113
                      + + i G+gp + e+++++++  + +  +vef+    ed ++ll+ +d  v          +++k+l+++ +glpv+a + + + e+v   +ng
       CCD22945.1 299 ILCFITGKGPlK-EKYNAQVKeqKWNrCHVEFVWLSsEDYPKLLQLCDYGVSLHtssSglDLPMKILDMFGSGLPVIAMNYPVLDELVthDVNG 391
                      55889*****65.57777775453321348888766899*********99985544543358*******************999****9889** PP

                      EE--TT-HHHHHHHHHHH CS
  Glyco_trans_1_4 114 llvppgdpealaeailrL 131
                      l ++  d  ++ e ++  
       CCD22945.1 392 LKFS--DRREMHESLIFA 407
                      9998..888887777655 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   3.5e-10   1.2e-06      12     163 ..      60     218 ..      51     219 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 3.5e-10
  Glyco_transf_4  12 araLarrGheVtvv....tpgddgpleeev....elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrr..rlg 96 
                     a  +a++G++V+++    +      +   v    ++++ +++++  + k l++ ++ ++++++ l+  + D + +++p+++    la      ++
      CCD22945.1  60 ALSFAELGWDVELCgyveS----SLPSSIVdasnITIHPITKRNGMIMKVLGQVWTIAQQFWE-LR--GSDYILVQNPPSIPILPLAVIYstCTR 147
                     5668899999999965421....2222221233567777777777777777777777777776.34..5788888888887655555555667** PP

  Glyco_transf_4  97 iplVltvHglye....krllkarlkplsrllralerrllrradrviavSeatadelrerygvppekitVip 163
                     ++l++  H+l++     ++ +++  pl  + +++e+++ + ad  ++v+ea++++l+++++++p+k +V++
      CCD22945.1 148 CKLIIDWHNLAYsilqLKFNGNFYHPLVLVSFMVEWFFSKFADYNLTVTEAMREYLIKNFNLNPKKCVVLY 218
                     *************99988888888999999999***********************************987 PP

>> Glyco_trans_1_2  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   3.5e-08   0.00013       3      77 ..     350     425 ..     348     437 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 3.5e-08
  Glyco_trans_1_2   3 Lnpsrs.espnlrlfEaaacGafaltddaegleelftpgkevilfedleelaekiryllanpeerraiaeaarerv 77 
                      L++s s  ++ +++++  ++G ++++   + l+el+t +  ++ f+d  e+ e + +++++ e+++++++aa  + 
       CCD22945.1 350 LHTSSSgLDLPMKILDMFGSGLPVIAMNYPVLDELVTHDVNGLKFSDRREMHESLIFAMKDAELYKRLRQAALLES 425
                      555555345889***************99******************************************98664 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.4e-06     0.012      14     157 ..      63     217 ..      51     219 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.4e-06
  Glyco_trans_4_4  14 LaarGheVtvltpapapgape.leedgvrvhrlpvprrpspladlaalralrrllrqrrerpdvvhahspt...aglaarlarrrrgiplvvtl 103
                      +a++G++V++    +   +   +++  +++h++   r++   + l  ++  ++++ ++ ++ d + +++p+   + ++a++ +  ++ +l++++
       CCD22945.1  63 FAELGWDVELCGYVESSLPSSiVDASNITIHPITK-RNGMIMKVLGQVWTIAQQF-WELRGSDYILVQNPPsipILPLAVIYSTCTRCKLIIDW 154
                      56666666665433322222214455666666433.3444556666778888877.6999*********874443445555564579******* PP

  Glyco_trans_4_4 104 hglllrrg.sgavrrly.......ralerrllrradavlvvseaeaeelra.lgvpadrvvvv 157
                      h+l++      + +++y        ++e +  + ad  l+v+ea++e+l+  +++ + + vv+
       CCD22945.1 155 HNLAYSILqLKFNGNFYhplvlvsFMVEWFFSKFADYNLTVTEAMREYLIKnFNLNPKKCVVL 217
                      *988553344455555522223334559999999****************9888999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3183.20
//
Query:       CCD22946.1  [L=294]
Description: hypothetical protein NDAI_0A07920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-75  250.6   0.1    9.6e-75  250.1   0.1    1.2  1  Spermine_synth   Spermine/spermidine synthase domain
    1.7e-26   91.9   0.1      3e-26   91.1   0.1    1.4  1  Spermine_synt_N  Spermidine synthase tetramerisation domain
    0.00017   22.2   0.0    0.00037   21.1   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
     0.0015   19.2   0.1     0.0058   17.3   0.0    1.9  2  Methyltransf_12  Methyltransferase domain
     0.0037   16.5   0.0     0.0062   15.8   0.0    1.3  1  DUF43            Branched-chain polyamine synthase A C-termin
  ------ inclusion threshold ------
      0.017   15.0   0.0       0.03   14.2   0.0    1.3  1  Methyltransf_18  Methyltransferase domain
        0.1   12.1   0.0       0.13   11.8   0.0    1.2  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.1   0.1   3.8e-78   9.6e-75       1     187 [.      72     256 ..      72     257 .. 0.98

  Alignments for each domain:
  == domain 1  score: 250.1 bits;  conditional E-value: 3.8e-78
                     THHHHHHHHHHHHCCSSST-EEEEESSTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHSHHHHTTCGGCTTEEEEESTCHHHHCTCSS-EEE CS
  Spermine_synth   1 efaykemiahvplmlhknpkevLiiGGgDGgvlrevvkhntvekitlvdiDqkvidfskkflpslaisafndarvklvlgdgfkflkayekkfdv 95 
                     ef+y+emi+h+++++h+npk+vL+iGGgDGgvlrevvkh++ve+++l+diD+ vi +sk++lp++a s +++++vk ++gdgf+fl++y+++fdv
      CCD22946.1  72 EFSYQEMITHLAMNSHPNPKKVLVIGGGDGGVLREVVKHESVEEAVLCDIDEAVIRLSKEYLPEMAKS-YSHPKVKTHIGDGFQFLRDYQNTFDV 165
                     799*****************************************************************.************************** PP

                     EEEECCSTTCSSCGCSSHHHHHHHHHTEEEEEEEEEEEEETTTCHHHHHHHHHHHHTTSSCEEEEEEEETTTSCSCEEEEEEEESSTT..TT CS
  Spermine_synth  96 vivdsldpvgpaenlFskeffdllkkvlkedGviilqaekpelekelvinvdksgkqvfalqvepsavlvPtylsgminfvveskknlvtlk 187
                     +i+ds+dp+gpae+lF+k++f+ll+ +l+e Gvi++qae++++++ ++++++k++++vf+ ++e++++++Pty+sg i+f+v+sk++ +++k
      CCD22946.1 166 IITDSSDPEGPAETLFQKSYFELLNGALTEKGVITTQAENMWIHLPVIKDLKKACSEVFP-VAEYAYTTIPTYPSGSIGFMVCSKDKDCNVK 256
                     ************************************************************.************************9888776 PP

>> Spermine_synt_N  Spermidine synthase tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.1   1.2e-29     3e-26       1      53 []      14      69 ..      14      69 .. 0.99

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 1.2e-29
                     EEEEEEEE...TTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEET CS
  Spermine_synt_N  1 gWfteisd...pglalelkVekvLyeekSeyQdieifesktfGkvLvLDgvvqltE 53
                     gWf+eisd   pg+a++lkVekvL++ekS+yQd++if+s+t+G+vLvLD+v+q+tE
       CCD22946.1 14 GWFREISDtmwPGQAMTLKVEKVLHHEKSKYQDVLIFKSTTYGNVLVLDNVIQATE 69
                     7******************************************************9 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.4e-07   0.00037       1      70 [.      93     168 ..      93     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.4e-07
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH.....TTTTEEEEESBCCG.BSSSTTTEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraee.....eglnvefvqgdaed.lpfedgsfDlvvs 70 
                      vL +G G G +++++ k+ + ++ + +Di+e+ ++  +e + e     ++++v+ + gd  + l   +++fD+++ 
       CCD22946.1  93 VLVIGGGDGGVLREVVKHESVEEAVLCDIDEAVIRLSKEYLPEmaksySHPKVKTHIGDGFQfLRDYQNTFDVIIT 168
                      899**************96589**************998887766555556*********664889999*****97 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.3   3.3e+03      67      94 ..      55      83 ..      24      87 .. 0.63
   2 !   17.3   0.0   2.3e-06    0.0058       1      71 [.      94     167 ..      94     171 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.3
  Methyltransf_12 67 fDlvvas.nvlhhlkdirevldnirklLk 94
                     +  v+++ nv+++++  +++ +++  +L+
       CCD22946.1 55 YGNVLVLdNVIQATERDEFSYQEMITHLA 83
                     33344444888888887788777777776 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.3e-06
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.....ssfDlvv 71 
                      L iG+G+G +lr++ ++ +  e + +Di++++i   ke l +  +++ ++ ++++   +d ++      ++fD+++
       CCD22946.1  94 LVIGGGDGGVLREVVKHESVEEAVLCDIDEAVIRLSKEYLPEM-AKSYSHPKVKTHI-GDGFQFlrdyqNTFDVII 167
                      569******************************5555555543.3444444444332.334444557889999998 PP

>> DUF43  Branched-chain polyamine synthase A C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.4e-06    0.0062      45     121 ..      90     171 ..      79     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.4e-06
                 T-EEEEES-TT-HHHHHHHH.T--SEEEEE-S-HHHHHHHH....HHHHHHT--.EEEE---TTS---TTTSS-BSEEEE--- CS
       DUF43  45 gkeilvlGdDDLtslalaLt.glpkkvvvvDiDeRlikfie....rvakelglk.ieaivyDlrkplpeelkekFdvfitDPp 121
                  k++lv+G  D   l   +  +  ++ v+ DiDe +i++ +    ++ak ++ + +++++ D  + l  ++++ Fdv+itD  
  CCD22946.1  90 PKKVLVIGGGDGGVLREVVKhESVEEAVLCDIDEAVIRLSKeylpEMAKSYSHPkVKTHIGDGFQFL-RDYQNTFDVIITDSS 171
                 589999998888888766651567889999*******987622225788888888999999988766.67899*******964 PP

>> Methyltransf_18  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.2e-05      0.03      14      87 ..      89     167 ..      81     168 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
  Methyltransf_18  14 kgsrvaDiGtDHgylpiylvkegkakkviasDinegplekakeniek...agledkievrlsdGleklkeee..vdtvv 87 
                      + ++v+ iG   g +  ++vk++ +++++ +Di e  ++ +ke + +   +  + k++++++dG++ l++ +  +d+++
       CCD22946.1  89 NPKKVLVIGGGDGGVLREVVKHESVEEAVLCDIDEAVIRLSKEYLPEmakSYSHPKVKTHIGDGFQFLRDYQntFDVII 167
                      556777788888899999***********************99876522144577*************95543355544 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.1e-05      0.13      23     103 ..      78     168 ..      57     227 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.1e-05
                 HHHHCHCC...TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.....EEEEE-STTTTST..TS-EEEEEE CS
         MTS  23 Lletlpke...lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.....vevvasdvleeve..ekkfdlivs 103
                 ++++l  +     +kvl +G G G +  ++ k+++  e +l+d+d + ++++ke l + + +     v+++  d+++ +   ++ fd+i++
  CCD22946.1  78 MITHLAMNshpNPKKVLVIGGGDGGVLREVVKHESVEEAVLCDIDEAVIRLSKEYLPEMAKSyshpkVKTHIGDGFQFLRdyQNTFDVIIT 168
                 666777666666678*******9988888888888889***************99877665556678999999999877744588999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2190.49
//
Query:       CCD22947.1  [L=147]
Description: hypothetical protein NDAI_0A07930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-23   83.8   0.0    1.5e-23   83.7   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   8.2e-28   1.5e-23     237     342 .]       4     115 ..       1     115 [. 0.94

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 8.2e-28
                   HHHH...HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCC..TT.HHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH CS
  Oxidored_FMN 237 faet...aqkivllkelekrlkdgkklalvhaaeprkrgagsvrte..qe.kntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefla 327
                   +a+    aq++++l+elekr+k+gk+la+vh++epr+++++ ++ e  ++ ++++f +++wk+ +i++g+ a +++ a  +  ++++L ++gR f+a
    CCD22947.1   4 GADPtllAQYAYVLGELEKRAKAGKRLAFVHLVEPRVTNPFMTEGEgeYNdGTNDFAYSIWKGVIIRAGNLALHPEVARELVANDRTLLGYGRFFIA 100
                   55555679***********************************99987888999*********************9999999*************** PP

                   -TTHHHHHHCCTCGG CS
  Oxidored_FMN 328 dpdlveklkkglpln 342
                   +pdlve+l+kglpln
    CCD22947.1 101 NPDLVERLAKGLPLN 115
                   ************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1175.75
//
Query:       CCD22948.1  [L=247]
Description: hypothetical protein NDAI_0A07940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-17   62.4   0.0    1.4e-16   60.7   0.0    1.8  2  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.1   1.8e+03     102     117 ..      53      68 ..      26      82 .. 0.70
   2 !   60.7   0.0   7.9e-21   1.4e-16       6     121 ..      96     219 ..      92     229 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.1
                 TTEEEEEEEEHHHHHH CS
       NUDIX 102 nevsevrwvpleellk 117
                   +++++w+ le+++ 
  CCD22948.1  53 SNTKDCKWIGLEKIKY 68 
                 4567888999999832 PP

  == domain 2  score: 60.7 bits;  conditional E-value: 7.9e-21
                 EEEEEEETTSE...EEEEEESSSSTTT..EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE......EEEC CS
       NUDIX   6 vgvvllnekge...vLlvrrskkpfpg..WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl......eeve 93 
                 v ++l  ++g+   +Ll+++++ p +g   e+P+G +++gE++++AA+REl+EEtG+  + +++      +a+ d  +++++ +l++ +      e+++
  CCD22948.1  96 VLAILKYDDGRpdeILLQKQYRPPVKGvcIEMPAGLIDKGEDVATAAIRELKEETGFVGKIIHISP----TAFNDPGFTNTNLVLVTIEidmslpENKN 190
                 56664444445577*******7777775445*************************9888888888....44444445555555555556542104444 PP

                 SGCSST..STTTEEEEEEEEHHHH..HHHHTH CS
       NUDIX  94 gelepn..denevsevrwvpleel..lkekla 121
                  +   +  +ene+ e+  vpl+++   + +l+
  CCD22948.1 191 PQ---TelEENEFIECFSVPLKKFaeELIELE 219
                 44...2466*************9944333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 1696.35
//
Query:       CCD22949.1  [L=96]
Description: hypothetical protein NDAI_0A07950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-23   83.3   2.3    1.4e-23   83.1   2.3    1.0  1  EnY2          Transcription factor e(y)2
  ------ inclusion threshold ------
      0.014   15.6   0.2       0.02   15.1   0.2    1.4  1  Nod1          Gef2-related medial cortical node protein Nod1
      0.022   14.7   0.5      0.025   14.5   0.5    1.1  1  CHASE3        CHASE3 domain
       0.11   12.0   0.0       0.11   12.0   0.0    1.1  1  Pox_E8        Poxvirus E8 protein
       0.15   12.8   4.5        3.6    8.4   0.8    2.4  2  COMPASS-Shg1  COMPASS (Complex proteins associated with Set1p


Domain annotation for each model (and alignments):
>> EnY2  Transcription factor e(y)2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   2.3   3.8e-27   1.4e-23       1      84 []       8      89 ..       8      89 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 3.8e-27
                HHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH..HTSS.CHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHH CS
        EnY2  1 kakiqqkLvesGererlkelLrerLeesGWrdevkelckeiirekgleeevsveelveeitpkaralVPdevkkellqrIrefL 84
                ka+iq++Lve+G++++++++L e+L ++GW d+vk+++ke+i++   + +++++el+++i+ +a +lV+++ k+e lq+Ir+fL
  CCD22949.1  8 KAQIQRYLVETGNYKKISQKLSENLLQEGWIDRVKRMTKEEIEK--TNGTLNYNELLTKIEGEALNLVSSSTKEEALQQIRTFL 89
                69*****************************************8..6777*********************************8 PP

>> Nod1  Gef2-related medial cortical node protein Nod1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.2   5.5e-06      0.02      34      84 ..      45      95 ..      17      96 .] 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.5e-06
        Nod1 34 lkdkilekaGylLsekliqrLenldldlnskslkekavqqvkslleeLpes 84
                 k+ i +  G l  ++l+ ++e   l+l s s+ke+a+qq+++ l+e+ e+
  CCD22949.1 45 TKEEIEKTNGTLNYNELLTKIEGEALNLVSSSTKEEALQQIRTFLSEIVET 95
                58899999*************99999999999***************9775 PP

>> CHASE3  CHASE3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.5   6.9e-06     0.025      54     128 ..      20      96 .]       8      96 .] 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.9e-06
      CHASE3  54 aleelreltadnpeqqerldrlealieqklaeleetialrre.ggle.aalalvrsdegkelmdeiraliaemrdee 128
                 +++++++ +++n  q   +dr+++  ++ ++  ++t++  +   + e +al+lv s    e+ ++ir+ ++e+ ++e
  CCD22949.1  20 NYKKISQKLSENLLQEGWIDRVKRMTKEEIEKTNGTLNYNELlTKIEgEALNLVSSSTKEEALQQIRTFLSEIVETE 96 
                 567899999*****************************9998645557************************98876 PP

>> Pox_E8  Poxvirus E8 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.1e-05      0.11     133     176 ..       9      51 ..       2      89 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.1e-05
      Pox_E8 133 velakylrrgGdykPlfsrldedniytkklplneaeillkntsk 176
                  ++ +yl ++G+yk + ++l e+ + ++ +   +  ++ ++  k
  CCD22949.1   9 AQIQRYLVETGNYKKISQKLSENLLQEGWIDRVKRMTK-EEIEK 51 
                 5789*****************99888885543332222.22222 PP

>> COMPASS-Shg1  COMPASS (Complex proteins associated with Set1p) component shg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.8     0.001       3.6      54     101 ..       3      49 ..       1      50 [. 0.72
   2 ?    6.6   0.9    0.0034        12      34      81 ..      39      87 ..      34      96 .] 0.64

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.001
  COMPASS-Shg1  54 nrgkaaaliegeidrsdvykkleegvdrivdqdlqeepklreiikeei 101
                   + ++++a+i++ ++++++ykk+++++ + + q+    ++++ + keei
    CCD22949.1   3 DSASIKAQIQRYLVETGNYKKISQKLSENLLQEGW-IDRVKRMTKEEI 49 
                   677899*****************888776665543.455555555555 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0034
  COMPASS-Shg1 34 kkveeivesevkkdp.sllfknrgkaaaliegeidrsdvykkle....egvdr 81
                  ++v+ + ++e++k + +l ++   ++ ++iege  +  v ++++    +++  
    CCD22949.1 39 DRVKRMTKEEIEKTNgTLNYN---ELLTKIEGEALNL-VSSSTKeealQQIRT 87
                  689999999999998555555...8888899998884.444344233344443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1236  (0.0689386); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 721.04
//
Query:       CCD22950.1  [L=785]
Description: hypothetical protein NDAI_0A07960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-54  183.0   0.2    1.7e-53  181.6   0.1    1.7  1  SNF2_N        SNF2 family N-terminal domain
    9.3e-15   54.9   0.0    2.1e-13   50.6   0.0    2.8  2  Helicase_C    Helicase conserved C-terminal domain
      1e-09   38.6   0.2      1e-09   38.6   0.2    1.9  2  ResIII        Type III restriction enzyme, res subunit
    7.8e-08   32.1  11.3    7.8e-08   32.1  11.3    2.5  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    3.5e-07   30.2   0.0      7e-07   29.2   0.0    1.4  1  DEAD          DEAD/DEAH box helicase
    0.00035   20.8  15.5    0.00063   19.9  15.5    1.4  1  YL1           YL1 nuclear protein
    0.00058   19.7   8.8    0.00058   19.7   8.8    2.6  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    0.00098   19.2   9.4    0.00098   19.2   9.4    2.3  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
     0.0016   18.4   5.5     0.0016   18.4   5.5    2.0  1  zf-RING_UBOX  RING-type zinc-finger
      0.003   17.9   9.5      0.003   17.9   9.5    2.4  2  zf-RING_2     Ring finger domain
     0.0062   16.3   6.1      0.018   14.8   6.1    1.8  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.013   15.3   7.9      0.013   15.3   7.9    2.3  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
      0.028   14.7   0.0        0.1   12.8   0.0    2.0  2  MH2           MH2 domain
       0.16   12.0  11.8      0.034   14.2   2.0    2.5  2  Zn_Tnp_IS91   Transposase zinc-binding domain
        1.6    8.0  18.5        2.5    7.3  18.5    1.2  1  BUD22         BUD22
        2.1    6.4  17.8        3.2    5.9  17.8    1.1  1  Nop14         Nop14-like family
        3.1    8.0  10.9      0.074   13.2   2.4    2.4  2  zf-RING_10    zinc RING finger of MSL2
        3.9    7.4  19.7      0.081   12.8   8.2    2.4  2  Prok-RING_4   Prokaryotic RING finger family 4
        4.8    6.5   7.0          8    5.8   7.0    1.2  1  Pilt          Protein incorporated later into Tight Junctions
        5.4    7.2   7.0        3.2    7.9   0.3    2.8  2  SR1P          SR1 protein


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   0.1   1.9e-56   1.7e-53      52     350 .]     194     514 ..     185     514 .. 0.87

  Alignments for each domain:
  == domain 1  score: 181.6 bits;  conditional E-value: 1.9e-56
                 HHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH---------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  52 kqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkllady 150
                 + +++GGiLaDemG+GKT+q++al++              +dt + p L+v+P+  l qW+nei++h+ ++ l+ ++ +g +      ++++ k l ++
  CCD22950.1 194 EGKFQGGILADEMGMGKTIQTIALLM--------------HDTTKRPSLVVAPTVALVQWKNEINQHTDGK-LKTYMFHGTS------KNIDVKKLSEF 271
                 56899*********************..............5666789********************9987.9999999964......4578899**** PP

                 -EEEE-HHHHHHHT.................TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--H CS
                 xxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 151 dvvittYdvlsreaelq...........kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgek 238
                 dv++ttY+vl+++   q           k++s l++++  rv+lDE+h++k  +s++a av+ L+t++rw+ltGTP+qn   ++y+L+ fL+++pf ++
  CCD22950.1 272 DVILTTYSVLESVFRKQnygfkrkaglvKEPSLLHNMQFYRVILDEAHNIKDRQSNTARAVNFLQTKKRWCLTGTPLQNRIGEMYSLIRFLNIDPFAKY 370
                 ***********777555899****************************************************************************974 PP

                 H..........HHHHHTHHHHH...................................HHHHHHHHHHHTT-STTEE---GGGT..--S---EEEEEEEE CS
                 x..........xxxxxxxxxxx...................................xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
      SNF2_N 239 q..........tfdkllqrpie...................................aqaekgrsrLlqllqrlmlrrakkdv..eknlPpkteeiifl 290
                            +         +                                       ++ +++ +ll+++mlrr+k +   +  lPp+++ +++ 
  CCD22950.1 371 FctkcdcnskdW---------KfsdnmhcdvcnhvlmqhtnffnhfmlkniqkfgveGLGLESFNNIQTLLKNIMLRRTKVERadDLGLPPRIVTVRRD 460
                 322333443330.........24455556666*****999999999999999999988889999999999999*******99977789*********** PP

                 E--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHHH---XX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 291 klskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacnhpqlv 350
                  ++++e+ +Y  l +++  k  + + +  + +        ++i++l+++ rq   hp+lv
  CCD22950.1 461 FFNEEEKDLYRSLYSDSKRKYNSYVEEGVVLNNY------ANIFSLITRMRQLADHPDLV 514
                 ***********88888888888887777544333......458999*******9999985 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.71   6.3e+02       8      68 ..     216     272 ..     210     284 .. 0.70
   2 !   50.6   0.0   2.3e-16   2.1e-13       2     111 .]     615     729 ..     614     729 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.71
                 HHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSS CS
  Helicase_C   8 ellkleeeggkilifvntidrlekvklllekk..gikvavlhgelpqnereeileqfnkgesd 68 
                 +ll +   ++ +l++++t+  ++  + ++++   ++k+ ++hg +++n   + l++f     d
  CCD22950.1 216 ALLMHDTTKRPSLVVAPTVALVQWKNEINQHTdgKLKTYMFHG-TSKNIDVKKLSEF-----D 272
                 4554666777789999999977655555333367899*9****.9999999999998.....3 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 2.3e-16
                 HHHHHHHHH...HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C   2 kleallell...kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlpr 95 
                 k+eal+e+l    + +++ k+++f++++++l+ +++ l++ g+++++l+g+++  +r+e+++ f  + ++  +L++ ++++  +++ +++ V+ +d+++
  CCD22950.1 615 KIEALVEELyksRSPVRTIKSIVFSQFTSMLDLIEWRLKRAGFETVKLQGSMSPTQRDETIKYFMnNIHCEvFLVSLKAGGVALNLCEASQVFLMDPWW 713
                 788888888765566777788**********8888889999***********************53777888*************************** PP

                 SHHHHHHHHTTSSSTT CS
  Helicase_C  96 nvtsyiqriGRtgRag 111
                 n++  +q+ +R++R+g
  CCD22950.1 714 NPSVEWQSGDRVHRIG 729
                 **************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.9       5.4   4.9e+03      88     122 ..      59     109 ..      28     143 .. 0.62
   2 !   38.6   0.2   1.2e-12     1e-09       4     169 ..     178     347 ..     175     349 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.4
                 EESSS-B--.................-SEEEEEHHHHHHTH.......... CS
      ResIII  88 kvsgdkkka..........kekdstnkkilvttiqsldadseee......e 122
                  +++d+++           +++d+++ + lv   ++++++ + +      +
  CCD22950.1  59 LKQEDEDDDeyvdavplktENEDKDDLDALVNGKDTVNNNDDDDdddeplN 109
                 444444444555566666566666777777777777777664444444431 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 1.2e-12
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekds 101
                 l + Q e +  l+++ +  + + g+++ + G+GKT+   a l+   +k       l+++p+ +l+ q+++e+++ ++ + k     ++g +k++  k+ 
  CCD22950.1 178 LLPFQLEGLHWLIAQEE-GKFQGGILADEMGMGKTIQTiALLMHDTTKR----PSLVVAPTVALV-QWKNEINQHTDGKLKT--YMFHGTSKNIDVKKL 268
                 56666666666665554.677799999********97735555555554....78********98.9***********9865..444444444445777 PP

                 ..-SEEEEEHHHHHHTH..................HHHTTT-SEEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII 102 tnkkilvttiqsldadseee..........eeeseellrdrfdviiiDEaHrlgak.kswreilekfkeavllglTATp 169
                 ++ ++++tt++ l +  +++           +e   l + +f  +i DEaH++++  ++  ++++ ++ +++  lT+Tp
  CCD22950.1 269 SEFDVILTTYSVLESVFRKQnygfkrkaglVKEPSLLHNMQFYRVILDEAHNIKDRqSNTARAVNFLQTKKRWCLTGTP 347
                 88***************88899999999988888888888888************84466778999************9 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3       3.1   2.7e+03       1      12 [.     390     401 ..     390     404 .. 0.81
   2 !   32.1  11.3   8.7e-11   7.8e-08       1      41 []     531     575 ..     531     575 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.1
                 -TTT-S--SS-E CS
    zf-C3HC4   1 CpiCleeakepn 12 
                 C +C +++++++
  CCD22950.1 390 CDVCNHVLMQHT 401
                 999999888865 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 8.7e-11
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC.....TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks.....rkkvkCPlC 41 
                 C++C +ea+ep   ++C+H+fC+ Ci+++++s     ++k  CP+C
  CCD22950.1 531 CQLCDDEAEEPI-ESKCHHKFCRLCIKEYIESfmennNNKLACPVC 575
                 ************.*********************97666666**** PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   7.8e-10     7e-07      18     149 ..     201     335 ..     180     350 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 7.8e-10
                 EEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHHH.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
        DEAD  18 lvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrlddll.... 112
                 ++a e G+GKT   +  ++      +++t+   l+v+Pt +L+ q  n++++ ++  +l++  +++g++++ +++kl ++ d++++t + l +++    
  CCD22950.1 201 ILADEMGMGKTIQTIALLM------HDTTKRPSLVVAPTVALV-QWKNEINQHTDG-KLKTY-MFHGTSKNIDVKKL-SEFDVILTTYSVLESVFrkqn 289
                 567789*****98655555......46788899*********8.789999999996.45664.67899999******.9**************999988 PP

                 .........HCTSSH....CTTEEE..EEEETHHHHHHTTTHHHHHHHHHHS CS
                 .........xxxxxx....xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 113 .........stgkln....lsqvrf..lVlDEadrlldqgfsdfinrilnql 149
                               +    l++++f  ++lDEa+++ d   +    r +n l
  CCD22950.1 290 ygfkrkaglV----KepslLHNMQFyrVILDEAHNIKDR--QSNTARAVNFL 335
                 8886533331....3666789998888**********98..55555556666 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9  15.5   7.1e-07   0.00063      13     101 ..      29     135 ..      20     172 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 7.1e-07
                 xxxxxxxx........xxxxxx........xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
         YL1  13 kLleqeee........edelel........lFaEeedDeefese....eeeeeeensDsdfdsdeedeesdeeedeeegekelerqerkkr.kkekkkr 90 
                 +L ++ee+        +d+ ++        l +E+edD+e+++      e+e+  ++D d   +  d  +++++d++++e  l++++++k  kk++ k+
  CCD22950.1  29 ELSDHEEQktlvnrddDDDADEetvsdvieLKQEDEDDDEYVDAvplkTENED--KDDLDALVNGKDTVNNNDDDDDDDEP-LNKKRKRKAtKKAPTKK 124
                 556666666666665444444478899999***********975221123333..35555555555555555555555554.44333333345555555 PP

                 xxxxxxxxxxx RF
         YL1  91 kaqkkkskkkk 101
                 k++++k+k + 
  CCD22950.1 125 KKKAAKPKVSY 135
                 55555555444 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.5       2.5   2.2e+03       2       9 ..     390     397 ..     383     402 .. 0.59
   2 !   19.7   8.8   6.4e-07   0.00058       2      40 .]     531     575 ..     530     575 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
  zf-C3HC4_2   2 CpiCldml 9  
                 C +C  +l
  CCD22950.1 390 CDVCNHVL 397
                 55554444 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 6.4e-07
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLee....kn...eCPlC 40 
                 C++C d+ ++p    +C H+fC+ Ci++++e+    +n    CP+C
  CCD22950.1 531 CQLCDDEAEEP-IESKCHHKFCRLCIKEYIESfmenNNnklACPVC 575
                 ***********.7789**********99765322223223789999 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   9.4   1.1e-06   0.00098       1      42 []     531     575 ..     531     575 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.1e-06
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqk...epdgeqllCplC 42 
                 C  C d  e+P+  +C h fC  Ci+++ +   e+++++l+Cp+C
  CCD22950.1 531 CQLCDDEAEEPIESKCHHKFCRLCIKEYIEsfmENNNNKLACPVC 575
                 999**********************98765222677777****** PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   5.5   1.8e-06    0.0016       1      39 []     531     573 ..     531     573 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.8e-06
  zf-RING_UBOX   1 CpIClelftdPlv.lpCGHtFCreCl.w...elskslegafkCP 39 
                   C  C ++ ++P +  +C+H FCr C+ +    + +++++++ CP
    CCD22950.1 531 CQLCDDEAEEP-IeSKCHHKFCRLCIkEyieSFMENNNNKLACP 573
                   99*********.8558**********62677999*********9 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   4.2       8.3   7.4e+03       8      24 ..     380     396 ..     369     411 .. 0.60
   2 !   17.9   9.5   3.3e-06     0.003       3      43 ..     531     575 ..     529     576 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 8.3
   zf-RING_2   8 eelssadsvlllpCgHv 24 
                 ++++ +d+++++ C+Hv
  CCD22950.1 380 KDWKFSDNMHCDVCNHV 396
                 44455556665557776 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 3.3e-06
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerw....lrssst...CPlC 43 
                 C +C +e    ++++  +C H f+r C++++    ++++++   CP+C
  CCD22950.1 531 CQLCDDEA---EEPIESKCHHKFCRLCIKEYiesfMENNNNklaCPVC 575
                 99998555...5566667*999******888566455555599***** PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   6.1     2e-05     0.018      13      56 ..     530     575 ..     524     576 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2e-05
                 B-TTTSSB-SSEEEESSS--EEEHHHHHHHC.....TTTS-EE-SCCC- CS
      zf-Nse  13 kCPltlqpfeePvtskkCpHvFEreaIleli.....krkktvkCPvagC 56 
                  C l   + eeP+ s kC+H F r  I e+i     +++++  CPv  C
  CCD22950.1 530 VCQLCDDEAEEPIES-KCHHKFCRLCIKEYIesfmeNNNNKLACPV--C 575
                 699999999***998.6*******************9*********..8 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   4.7       1.3   1.2e+03       4      27 ..     371     394 ..     368     400 .. 0.66
   2 ?   15.3   7.9   1.5e-05     0.013       5      44 ..     531     576 ..     529     580 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.3
                 B-TTTSSSBS-EEETTEEEEEE-H CS
  zf-C3HC4_3   4 eCviClerprnvvllpCgHlvlCe 27 
                  C  C  + +++ + + +H+ +C+
  CCD22950.1 371 FCTKCDCNSKDWKFSDNMHCDVCN 394
                 467777777777777766666664 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.5e-05
                 -TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.......TT-B-TTT- CS
  zf-C3HC4_3   5 CviClerprnvvllpCgHlvlCeeCaekllk.......rkkkCpiCr 44 
                 C++C ++ ++ +  +C H  +C  C +++ +       +k  Cp+C+
  CCD22950.1 531 CQLCDDEAEEPIESKCHHK-FCRLCIKEYIEsfmennnNKLACPVCH 576
                 *******************.*********999*999988889****6 PP

>> MH2  MH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       9.8   8.8e+03      76      96 ..     132     152 ..     121     197 .. 0.59
   2 ?   12.8   0.0   0.00011       0.1      43     121 ..     661     743 ..     620     777 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 9.8
         MH2  76 evwlenlsespvFVqspylnk 96 
                 +v  + ++++++F   p l++
  CCD22950.1 132 KVSYYERTTNNLFLHHPELKQ 152
                 455566666666666655553 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00011
         MH2  43 cLgllsnv.nrsekvekvrkkigkGvrlsyeeegevwlenlsespvFVqspylnkeagrap.dtvvkvppgeslkv..Fdlre 121
                 +L+    + +r+e+++   ++i   v l   ++g+v l+ +  s+vF   p +n + ++++ d+v+++ +   +k+  F +++
  CCD22950.1 661 KLQGSMSPtQRDETIKYFMNNIHCEVFLVSLKAGGVALNLCEASQVFLMDPWWNPSVEWQSgDRVHRIGQFRPVKItrFCIED 743
                 555555554888899**************999**********************99999989******996555541155444 PP

>> Zn_Tnp_IS91  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   2.6      0.18   1.6e+02      37      69 ..     367     399 ..     360     406 .. 0.83
   2 ?   14.2   2.0   3.8e-05     0.034      40      87 ..     529     577 ..     505     581 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.18
  Zn_Tnp_IS91  37 faryeCeeCghekivyfsCksrhCpsCqkkate 69 
                  fa+y C++C+ + +      + hC  C++  ++
   CCD22950.1 367 FAKYFCTKCDCNSKDWKFSDNMHCDVCNHVLMQ 399
                  78999****976666666699******998776 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.8e-05
  Zn_Tnp_IS91  40 yeCeeCg..hekivyfsCksrhCpsCqkkateewlekqqeellpvpyrhv 87 
                  + C+ C+   e+ +  +C++++C  C k++ e  +e+ +++ l +p+ h+
   CCD22950.1 529 IVCQLCDdeAEEPIESKCHHKFCRLCIKEYIESFMENNNNK-LACPVCHI 577
                  468888522669999********************766555.66777776 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  18.5    0.0028       2.5     184     280 ..      32     130 ..       9     150 .. 0.29

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0028
       BUD22 184 eeseddeeeeeededdedaee...deedeeaeerelaqydg.llasddeded......eyneetdeesseesdssdssesasesesessekkkkkkkkk 272
                 + +e++  ++ +d+dd+d+e+     e ++++e++ +  d+  l+ ++ed+d      +     +++ ++++d++d++e  +++++++++k k+++kkk
  CCD22950.1  32 DHEEQKTLVNRDDDDDADEETvsdVIELKQEDEDDDEYVDAvPLKTENEDKDdldalvN----GKDTVNNNDDDDDDDEPLNKKRKRKATK-KAPTKKK 125
                 11111111111111111111112111111222222222222223333333333323221....1222222222222222222222222222.2222222 PP

       BUD22 273 kkkakakk 280
                 kk   a+k
  CCD22950.1 126 KK---AAK 130
                 22...222 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  17.8    0.0035       3.2     343     445 ..      34     135 ..      11     159 .. 0.43

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0035
       Nop14 343 taeeeeeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdlese........eeeeedeleeelleeekkaaeekkekkkkkk 433
                 ++++  ++ +dd++ d++ v++  e ++e+e++de  +      + e+ed+ddl+ l +         +++++d   e l++++k++a++    k+ +k
  CCD22950.1  34 EEQKTLVNRDDDDDADEETVSDVIELKQEDEDDDEYVD--AVPLKTENEDKDDLDALVNGkdtvnnndDDDDDD---EPLNKKRKRKATK----KAPTK 123
                 22233444444445555555555555543333333222..2222222222233222222244565332222222...2223333322222....22334 PP

       Nop14 434 kseekakeelpy 445
                 k++++ak ++ y
  CCD22950.1 124 KKKKAAKPKVSY 135
                 444444445554 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   1.4       3.9   3.5e+03      38      44 ..     388     394 ..     368     410 .. 0.51
   2 ?   13.2   2.4   8.3e-05     0.074       5      32 ..     530     557 ..     527     592 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.9
  zf-RING_10  38 psCsqCk 44 
                  +C+ C+
  CCD22950.1 388 MHCDVCN 394
                 2355554 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 8.3e-05
  zf-RING_10   5 vCckLLvdPlepkekeCqHyvCrlCvgk 32 
                 vC     +  ep e++C+H  CrlC+++
  CCD22950.1 530 VCQLCDDEAEEPIESKCHHKFCRLCIKE 557
                 443333455678888**********986 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   3.7      0.95   8.5e+02      20      46 .]     371     403 ..     362     403 .. 0.74
   2 ?   12.8   8.2     9e-05     0.081       1      37 [.     531     576 ..     531     582 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.95
  Prok-RING_4  20 vCkeC...fdskdls...sCPlCqrrisksdpf 46 
                  +C +C    +++++s    C +C++ + +++ f
   CCD22950.1 371 FCTKCdcnSKDWKFSdnmHCDVCNHVLMQHTNF 403
                  7887754445567778889*****999999877 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 9e-05
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdsk......dls....sCPlCq 37 
                  C lC  + +++i + C H +C+ C ++       + +    +CP+C+
   CCD22950.1 531 CQLCDDEAEEPIESKCHHKFCRLCIKEYiesfmeN-NnnklACPVCH 576
                  9***********************99875555542.14699*****9 PP

>> Pilt  Protein incorporated later into Tight Junctions
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   7.0    0.0089         8     243     343 ..      19     119 ..      12     126 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0089
        Pilt 243 rarrshfssygtdfseeegekllleaeeeGeaedaavt..vesspkkkkdavdldsagssaeerdvllqdlkvissrvlseeeeeadkdpaaassrphr 339
                 r+ r++     +++s+ e +k l++ +++ +a++++v+  +e  ++ ++d + +d  + ++e+ d    d  v++++++++++++ d d+   ++r+++
  CCD22950.1  19 RSARKQ--INYSELSDHEEQKTLVNRDDDDDADEETVSdvIELKQEDEDDDEYVDAVPLKTENEDKDDLDALVNGKDTVNNNDDDDDDDEPLNKKRKRK 115
                 333444..2345689999999999999888888777642244444445555556677777788887788999*******99999999998899999999 PP

        Pilt 340 sPkr 343
                 + k+
  CCD22950.1 116 ATKK 119
                 9886 PP

>> SR1P  SR1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.8      0.47   4.2e+02      27      36 ..     371     380 ..     370     381 .. 0.86
   2 ?    7.9   0.3    0.0036       3.2       2      11 ..     527     536 ..     526     540 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.47
        SR1P  27 tCnqceCkka 36 
                 +C +c+C+++
  CCD22950.1 371 FCTKCDCNSK 380
                 7******987 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0036
        SR1P   2 GtIvCqtCna 11 
                 G+IvCq C+ 
  CCD22950.1 527 GIIVCQLCDD 536
                 9*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1527  (0.0851693); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.83u 0.33s 00:00:01.15 Elapsed: 00:00:00.52
# Mc/sec: 4559.78
//
Query:       CCD22951.1  [L=1390]
Description: hypothetical protein NDAI_0A07970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      8e-71  238.2   0.0    1.2e-70  237.6   0.0    1.3  1  NAD_binding_4    Male sterility protein
    2.8e-66  223.9   0.0    3.7e-66  223.5   0.0    1.2  1  AMP-binding      AMP-binding enzyme
    1.4e-14   54.1   0.0    3.3e-14   53.0   0.0    1.7  1  PP-binding       Phosphopantetheine attachment site
      8e-10   38.6   0.0    1.5e-09   37.7   0.0    1.4  1  Epimerase        NAD dependent epimerase/dehydratase family
    4.5e-08   32.2   2.8    0.00011   21.1   0.7    2.2  2  Condensation     Condensation domain
    4.1e-07   29.3   0.0    1.2e-06   27.8   0.0    1.7  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    0.00021   22.2   0.1     0.0012   19.7   0.0    2.5  2  AMP-binding_C    AMP-binding enzyme C-terminal domain
      0.004   17.1   0.0      0.012   15.5   0.0    1.9  1  NAD_binding_10   NAD(P)H-binding
  ------ inclusion threshold ------
      0.049   13.0   0.0      0.088   12.2   0.0    1.4  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
      0.052   12.7   0.0       0.14   11.3   0.0    1.7  2  Polysacc_synt_2  Polysaccharide biosynthesis protein


Domain annotation for each model (and alignments):
>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.6   0.0   6.7e-74   1.2e-70       1     256 [.     973    1223 ..     973    1224 .. 0.97

  Alignments for each domain:
  == domain 1  score: 237.6 bits;  conditional E-value: 6.7e-74
                     EE-TTSHHHHHHHHHHHHHS-.T...EEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EE CS
  NAD_binding_4    1 lTGaTGFLGkvLlekLLrttpev...kiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdvi 91  
                     +TGaTGFLG+++l ++L++++     k++++vRak++ ++++Rl+++ ++++ ++a      ++i+v+ GDls+ ++GLs+e++++l++e+dvi
     CCD22951.1  973 VTGATGFLGSYILSNILNRSSSPykfKVFAHVRAKDEVAGLARLQKAATTYGTWNANF---VDNIEVILGDLSKVNFGLSDEKWERLTNEIDVI 1063
                     7****************665543358*******************************7...********************************* PP

                     EE--SS-S.STTSSEEHHHHHHHHHHHHHHHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHH CS
  NAD_binding_4   92 ihsaAtvnfdepykellrvNveGtrevlelakklkklkvllhvST.ayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaE 184 
                     ih++A v++++py +l++ Nv +t +v++la+++k +  + +vS+ +++++e++  +++k+ +eg++   +++d + ++kgl  +Y qsK++aE
     CCD22951.1 1064 IHNGALVHWVYPYAKLRDSNVISTINVMNLAATGKPK-FFDFVSStSTLDTEHYFSLSDKLSSEGKTGILESDDLMGSSKGLGGGYGQSKWAAE 1156
                     ********************************99999.******99************************************************ PP

                     HHHHHHHHHH---EEEEEE-EEE--SSST---TTSHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHH CS
  NAD_binding_4  185 klvrearrrsglpvvivRpsiitgesktGwingsdlgirgllgliakgvlpeilgdkeavldlvpvDyvana 256 
                     +++r+a++r gl+ +ivRp+++tg s++G++n++d+++r l+++++ g++p i+++    +++vpvD va++
     CCD22951.1 1157 YIIRRAGER-GLRGCIVRPGYVTGASSNGSSNTDDFLLRCLKSAVQLGKIPAINNT----VNMVPVDQVAQV 1223
                     *******88.*****************************************99888....9*********97 PP

>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.5   0.0   2.1e-69   3.7e-66       1     423 []     242     703 ..     242     703 .. 0.86

  Alignments for each domain:
  == domain 1  score: 223.5 bits;  conditional E-value: 2.1e-69
                  HHHHHHHSTTSEEEEE.....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHH CS
  AMP-binding   1 leeqaaktpdkvalvd.....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayileds 93 
                  ++++a+k+p+++++v      +++ + +TY+e ++++n +A++L + G+k+gd+V+i++ ++++++v ++++lkaGa+ ++++p++++++    l  +
   CCD22951.1 242 FQDNADKFPERTCVVEtpsstNNKSRIFTYQEINRASNIVAHYLIQTGIKRGDVVMIYSSRGVDLMVCVMGVLKAGATFSVIDPAYPPARQTIYLGVA 339
                  799***********99****99999********************99*************************************************** PP

                  TESEEE....ETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS..........-TSCCCS-BTTSEEEEEEE--SSSS-EEE CS
  AMP-binding  94 eakvli....atvdselleklleaaakleavklvivldadellkeeelkeeeeseekae..........kpeeeeelkpddlayiiYTSGTTGkPKGV 177
                  +++ li    a        +l++  ++  + +lv+++   +++ +++  ++ + +   +          + +  + + pd+  ++ +TSG+ G PKGV
   CCD22951.1 340 KPRGLIvirsA-------GQLDQLVEDYITNELVVISRIPSIAIQDDGSIQGSIDPT-NdvlapyehlkDTRSGVVVGPDSNPTLSFTSGSEGIPKGV 429
                  ******44321.......333333333334444444444444433333333333322.1345566777755567789********************* PP

                  EEEHHHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHC CS
  AMP-binding 178 mlshrnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalka 275
                    +h +l++   +  ++++f+l+++d++ +   +ah+  +  +++++l+ Ga+++++++d+  +p+ l+e + k+++tv++++P++ + l+++   + 
   CCD22951.1 430 LGRHFSLAYYFNW--MSKQFNLSSNDKFTMLSGIAHDPIQ-RDMFTPLFLGAQLYVPTQDDIGTPGKLAEWMGKYECTVTHLTPAMGQLLTAQA-VT- 522
                  *******999555..678899999***************9.***************9999886678999*********************9963.44. PP

                  HHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC.EEEEEEEEGGGSSECEE.........CHCTTTCTSTTS-BEE-TTEEEEEE-TTT.SCBEETT CS
  AMP-binding 276 akkakdlsslrlvllggeplspellrffralfge.evlegYGlTEttgvvtv.........lpleedkkklgsvGkplpgvevkivDeet.gepvpdg 362
                        +++l++++++g+ l +    +++ l  +  ++++YG TEt  +v++         ++  ++ k +  +Gk + +v++ iv+ ++  + ++ g
   CCD22951.1 523 -----PFPKLHHAFFVGDILTKRDCLRLQTLAENcCIVNMYGTTETQRAVSYyevksrnqdPNFLKKLKDVMPAGKGMLNVQLLIVNRNDrTQICGVG 615
                  .....799****************999999987788**************888999*99994444555566679************6543157779** PP

                  SEEEEEEEETTS-SEBTT-HHHHHHHEEE..........................T.CCEEEEEEEEEEETTSEEEEEEECCCEEEET CS
  AMP-binding 363 eeGellvrgpgvmkgYlkkpeataeafds..........................e.grwlrTGDlgrldedGyleivgRkkdliklr 423
                  e+Ge++vr  g+++gY + p++++e+f++                          + +r++rTGDlgr+ ++G+ e +gR++d++k+r
   CCD22951.1 616 EVGEIYVRAGGLAEGYRGLPDLNKEKFVNnwfvdkdhwnyldkdhgepwrefwfgPrDRLYRTGDLGRYLPNGNCECCGRADDQVKIR 703
                  ****************************8899999*******************85678***************************96 PP

>> PP-binding  Phosphopantetheine attachment site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.9e-17   3.3e-14       2      67 .]     849     914 ..     848     914 .. 0.97

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.9e-17
  PP-binding   2 klrelvaevlgvpleeidpdtdlfdlGlDSllavellaaleeefgveiplsdlfehptlaelaayl 67 
                 ++r+l+ ++l + + +++pd+++fdlG++S+la++++  l++++++++pl ++f +ptl+++a+ +
  CCD22951.1 849 EVRDLWLSILPTTPPSVSPDDSFFDLGGHSILATKMMFTLKKKLNIDLPLGTVFKYPTLKAFANEI 914
                 79************************************************************9865 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   8.1e-13   1.5e-09       1     194 [.     971    1200 ..     971    1235 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 8.1e-13
                  EEEETTTSHHHHHHHHHHHHCT...SEEEEEES-STTTTCHHCHHC.......................EEEE--TT-HH......HHHHHHHHHT- CS
   Epimerase    1 ilVtGatGfiGsalvkallekg...yevigldrlssasntarledl.......................elveldltdrs......alerlfkeeqp 65  
                  ++VtGatGf+Gs+++ ++l++    y+  ++++ + +++ a l++l                       +     l + +      ++erl +  ++
  CCD22951.1  971 VFVTGATGFLGSYILSNILNRSsspYKFKVFAHVRAKDEVAGLARLqkaattygtwnanfvdnievilgD-----LSKVNfglsdeKWERLTN--EI 1060
                  68*******************99999988888887777777777778899**************555553.....443333333347999988..8* PP

                  SEEEE--S---HHHHHHSHHHHHHHHTHHHHHHHHHHHHHTCTEEEEEEEGGGGT.............SCSS.SSBSTCSTTS--.--SSHHHHHHH CS
   Epimerase   66 davihlAavggvaassedpadfieknlqgtlnlleaarkagvkrllflsSsevYG.............kdae.qpkeettltgpl.kpnspYaaaKl 147 
                  d++ih +a  ++       a++ ++n++ t n+++ a + ++k + f+sS+++               ++++ +  e++ l g+       Y+ +K 
  CCD22951.1 1061 DVIIHNGALVHWVYPY---AKLRDSNVISTINVMNLAATGKPKFFDFVSSTSTLDtehyfslsdklssEGKTgI-LESDDLMGSSkGLGGGYGQSKW 1153
                  ******7765555533...45566****************9999999999999998888888776654222223.45555555555999******** PP

                  HHHHHHHHHHHHHT-EEEEEEESEEESTT.S-TTSTTSHHHHHHHHHH CS
   Epimerase  148 ageklveayaaqyglnaiilrlfnlyGpr.ngegevsrvipalirkil 194 
                  a+e +++++ + + l+ +i+r+  + G+  ng ++ + ++ + ++++ 
  CCD22951.1 1154 AAEYIIRRAGERG-LRGCIVRPGYVTGASsNGSSNTDDFLLRCLKSAV 1200
                  *******987776.***************9888886666655555444 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   7.8e-05      0.14     198     274 ..       6      76 ..       3      81 .. 0.85
   2 !   21.1   0.7   5.9e-08   0.00011     365     455 ..     131     221 ..      95     222 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.8e-05
                   HHHHHH......S.---BSS---SS---S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SEEEE CS
  Condensation 198 Wseqlegelpvlq.LpkdkarpakrsfkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqddivv 274
                   W ++l++  p+l+ Lp d+ rp+++ ++ ++   +l    +    +la ++ ++ + v la++++lL++++g  div 
    CCD22951.1   6 WMQRLDN--PTLTvLPHDYLRPQNEPLS-EQADYSL----QIPQLDLAHSTFTDRYIVALAVWTALLYRLSGDADIVL 76 
                   99****8..99999**********9999.6666666....2233467888999**********************985 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 5.9e-08
                   CCCEEECCCC..SEEECEE...E.....SSEEEEEEETTSSEEEEEEEETTTS-HHHHHHHHHHHHHHHHHHHHSTTSBCCC-----HHHHHH CS
  Condensation 365 eseeeesqls..elklsvssveaeeeskydlsleasetngkltikieYntslFdeetierflerlkelleqviehpeqklselkllsdaekek 455
                   e+  + ++l+  + ++s++ ++ ++    dl++++   +g + ++i Yn+ l+++e i+ ++++++++l++v+ +p+ ++ +++l++++++ +
    CCD22951.1 131 EKAPQLFRLAflKDEFSIDLAQ-FKHHLLDLAFNLISLDGHI-LQITYNKLLYSSERIQILADQFIQFLSAVLLDPSLTITKVSLVTPTSATA 221
                   4444455444445566666666.7778889999999877776.89*****************************************9988765 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   6.7e-10   1.2e-06       2     233 ..     973    1230 ..     972    1242 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 6.7e-10
   3Beta_HSD    2 vtGgaGFlGralvkeLvrlee.lk......evrvlD.........lrespelleelskvnvkk........viegDvtd......kdkleealegvd 68  
                  vtG++GFlG+++ ++++++ +         +vr+ D         +         +++ ++ +        vi gD+ +       +k e+ ++++d
  CCD22951.1  973 VTGATGFLGSYILSNILNRSSsPYkfkvfaHVRAKDevaglarlqK-----A---ATTYGTWNanfvdnieVILGDLSKvnfglsDEKWERLTNEID 1061
                  9****************98764341111115666667666544221.....2...2222111122233466999**9762222226789******** PP

   3Beta_HSD   69 vvihlaslvdvagkltedeimkvnvkGTrnvleacvkagvrvlvYtSsaevvgpnsl...........geeilngdEeleyeslhqdaypesKalaE 154 
                  v+ih  +lv    ++   ++ + nv  T nv++ + +   +++ ++Ss +     ++           +  il++d+ +   +     y +sK  aE
  CCD22951.1 1062 VIIHNGALVHW--VYPYAKLRDSNVISTINVMNLAATGKPKFFDFVSSTSTLDTEHYfslsdklssegKTGILESDDLMGSSKGLGGGYGQSKWAAE 1156
                  *****777655..56778899************************9999887554322221111111134566667767777778999********* PP

   3Beta_HSD  155 klvlkaNgrtlknggrlyTcaLRpagiyG...egdkllvpllkqlaklglalfkigdeevlsdrvYvgNvawahilAaralq 233 
                   ++ +a +     g  l  c +Rp ++ G   +g++ +  +l +++k+  +l ki   ++++++v v+ va++ +    al+
  CCD22951.1 1157 YIIRRAGE----RG--LRGCIVRPGYVTGassNGSSNTDDFLLRCLKSAVQLGKIPAINNTVNMVPVDQVAQVVVA--TALN 1230
                  ******99....44..888**********444467888999*****************************987664..4444 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.8e-07    0.0012       2      76 .]     712     813 ..     711     813 .. 0.66
   2 ?   -2.8   0.1       7.4   1.3e+04       9      35 ..    1217    1244 ..    1213    1254 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.8e-07
                    HHHHHHSSTTEEEEEEE-----TTS---EEEEEE-.-...----.........................HHHHHHHHHHHHT-TTTS-SEEEE-S- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvGvpdevkGealvafVvlk.d...gsea.........................leeeLkahvrkelgpyavpkkvvfvde 68 
                    +   +++hp V+e      +++ +  +l+ f v++ d   +  +                         l++++k +++k+l++ya p+ +v+ d+
     CCD22951.1 712 IDTHISQHPLVRENITLVRKNADNEPTLITFMVPRfDkqeE--LskfqspvpedissdptvkgligyhlLAKDIKLFLKKRLASYAMPSLIVVWDK 805
                    55666667777665544333334455677777774332220..1223333444455556667777777899************************* PP

                    --B-TTS- CS
  AMP-binding_C  69 lpktrsGK 76 
                    lp++ +GK
     CCD22951.1 806 LPLNPNGK 813
                    *******9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.4
                     STTEEEEEEE.-----TTS---EEEEEE CS
  AMP-binding_C    9 hpaVaeaaVv.GvpdevkGealvafVvl 35  
                     +++Va+++V  + + +++ e  va V+ 
     CCD22951.1 1217 VDQVAQVVVAtALNPPKDDELTVAHVTA 1244
                     5567777776333333555777777765 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     7e-06     0.012       1     183 [.     975    1230 ..     975    1231 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7e-06
                      TTTSHHHHHHHHHHHHC-....T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-..CCHHHHHHTT-SEEEES---TCC...HHHH....... CS
  NAD_binding_10    1 GAtGkvGrllvkellarg....ghevtalvRnpeklaeleaeeglevvegdvtd..vedlaealkgadaVvsalggggk...deeg....... 77  
                      GAtG  G+++++ +l+r+    +++v a vR ++++a l++ +++ ++ g  +   v+ ++  l + + V + l+ ++    ++e+       
      CCD22951.1  975 GATGFLGSYILSNILNRSsspyKFKVFAHVRAKDEVAGLARLQKAATTYGTWNAnfVDNIEVILGDLSKVNFGLSDEKWerlTNEIdviihng 1067
                      9*****************9*999*************977755555555554433226777777777777777775444334322224455555 PP

                      ...................HHHHHHHHHHCT--EEEEEEETTTTSG...........CGCHHHHHHHH.......CCHHHH.HHHHHHHHHHH CS
  NAD_binding_10   78 ...................aknivdaakeagvkRfvlvsaigvgde...........vpgefgewnke.......llkayl.aakraaeellr 132 
                                         ++n+++ a + + k f +vs+  + d            ++g++g + ++        l+  + + k aae ++r
      CCD22951.1 1068 alvhwvypyaklrdsnvisTINVMNLAATGKPKFFDFVSSTSTLDTehyfslsdklsSEGKTGILESDdlmgsskGLGGGYgQSKWAAEYIIR 1160
                      5666666666666667799**********9**********99998422333222222222233222222211112333333489999999999 PP

                      H...SSSEEEEEEE-CEE-ST--SEEEE............ETTSS--.......-..-EEEHHHHHHHHHHHCTX CS
  NAD_binding_10  133 a...sgldwTivrpggLtdepttkyrvv............ekgepfk.......g..gsisradVAdvlvavldd 183 
                      +   +gl   ivrpg+ t   +++   +            +             +  + ++ ++VA+v+va + +
      CCD22951.1 1161 RageRGLRGCIVRPGYVTGASSNGSSNTddfllrclksavQ-----LgkipainNtvNMVPVDQVAQVVVATALN 1230
                      98888***********9876543333221222233332221.....01222221222467777777777776665 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.9e-05     0.088       1     130 [.     972    1109 ..     972    1113 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.9e-05
                     EEETTTSHHHHHHHHHHHHC.....T-CCEEEEEEESS-.TTHHHH...HCTTT...TTGCCEEEEE--TT-......HHHHHHHHHHHT-SEE CS
  GDP_Man_Dehyd    1 LiTGiaGfiGsylaelLlek.....gyevhgivrrsssf.ntgrie...hlakdpkeeleenlklhkgDltD......ssslerllaevqpdev 79  
                     ++TG +Gf Gsy++  +l++     +++v+  vr ++++  ++r++   + +   +++  +n++++ gDl+        ++ erl +e+  d +
     CCD22951.1  972 FVTGATGFLGSYILSNILNRssspyKFKVFAHVRAKDEVaGLARLQkaaTTYGTWNANFVDNIEVILGDLSKvnfglsDEKWERLTNEI--DVI 1063
                     59****************99444222333333443333212333331113344445555668888888886422222134566666655..899 PP

                     EE--S---HHHHTTSHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEG CS
  GDP_Man_Dehyd   80 ynLAAqshVdvsfekPeytaevnvlGtlrLLeairalglekkvrfyqaSts 130 
                     ++ +A  h  + + k     + nv+ t+++++++ + g  k + f  +Sts
     CCD22951.1 1064 IHNGALVHWVYPYAK---LRDSNVISTINVMNLAAT-GKPKFFDF-VSSTS 1109
                     999999988777765...778899999999998866.43333444.55565 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.6e-05      0.14       1     123 [.     971    1102 ..     971    1114 .. 0.70
   2 ?   -3.5   0.0       2.4   4.3e+03     138     176 ..    1148    1184 ..    1148    1185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.6e-05
                       EEEETTTSHHHHHHHHHHHHH..B-SEEEEEES....-HHH.HHHHHHH.......-TTEEEE....E--TT-......HHHHHHHTT..T- CS
  Polysacc_synt_2    1 vlvtGagGsiGselvrqilkk..kpkkiiller....dElk.lyeieke.leeelkkkklkveivpvigdvrd......kerlekaleelkv 78  
                       v+vtGa+G +Gs ++++il++  +p k  ++ +    dE++ l +++k  ++  + + ++  +i +++gd+ +       e+ e++ +  ++
       CCD22951.1  971 VFVTGATGFLGSYILSNILNRssSPYKFKVFAHvrakDEVAgLARLQKAaTTYGTWNANFVDNIEVILGDLSKvnfglsDEKWERLTN--EI 1060
                       79*****************997789999999762222565435566665422223334455678899999986222222456677766..9* PP

                       SEEEE------HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-SEE CS
  Polysacc_synt_2   79 dvvfhaAAlKhVPlveenpleaiktNvlgtenvieaaieagvkkv 123 
                       dv++h  Al h     +  ++  + Nv++t nv++ a + + k +
       CCD22951.1 1061 DVIIHNGALVHWV---YPYAKLRDSNVISTINVMNLAATGKPKFF 1102
                       ********98853...44556667899999999999987665555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.4
                       HHHHHHHHHHHHHHGGG--SSS--EEEEEEE-EETT..GTT CS
  Polysacc_synt_2  138 mGatKrlaekllqalakeseekktkfvvvRfGNVlg..SrG 176 
                       +G +K +ae ++  + ++      + ++vR G V g  S+G
       CCD22951.1 1148 YGQSKWAAEYIIRRAGERG----LRGCIVRPGYVTGasSNG 1184
                       7999999999998887776....899999999998733455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.43
# Mc/sec: 9618.78
//
Query:       CCD22952.1  [L=684]
Description: hypothetical protein NDAI_0A07980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.2e-156  520.0   0.0   3.8e-156  519.2   0.0    1.4  2  Transketolase_N  Transketolase, thiamine diphosphate binding 
    9.5e-46  155.7   0.0    1.5e-45  155.0   0.0    1.3  1  Transket_pyr     Transketolase, pyrimidine binding domain
    7.9e-08   32.2   0.0    1.9e-07   31.0   0.0    1.6  1  Transketolase_C  Transketolase, C-terminal domain
    4.5e-05   22.8   0.1    0.00017   20.9   0.1    1.9  1  DXP_synthase_N   1-deoxy-D-xylulose-5-phosphate synthase
     0.0035   16.8   0.0     0.0069   15.9   0.0    1.4  1  XFP_C            XFP C-terminal domain
     0.0075   15.3   0.0      0.034   13.1   0.0    1.8  2  E1_dh            Dehydrogenase E1 component
  ------ inclusion threshold ------
       0.24   11.1   0.0       0.59    9.8   0.0    1.6  1  Terpene_synth    Terpene synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Transketolase_N  Transketolase, thiamine diphosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  519.2   0.0  1.5e-159  3.8e-156       2     334 .]       8     339 ..       7     339 .. 0.98
   2 ?   -3.7   0.0       1.7   4.4e+03     217     242 ..     502     527 ..     488     528 .. 0.82

  Alignments for each domain:
  == domain 1  score: 519.2 bits;  conditional E-value: 1.5e-159
                      HHHHHHHHHHHHHHHHHHHT-S--HHHHHHHHHHHHHHHHT--B-TTBTT-TTS-EEEESSGGGHHHHHHHHHHTTSS--HHHHTTTTSTT-SS CS
  Transketolase_N   2 dkkavnaiRvLavDavekaksGhPGaplgladiaevlfkkllkhnPndpkwidRDRfvLsnGhaslllYsllhLtGydlsledlksfrqlgskt 95 
                      d+ a+ ++RvL+vD+v++a+sGhPGaplgla++a+v++k+l+ + P++p+wi+RDRfvLsnGha++llYsllhLtGyd++l+dlk+frql+skt
       CCD22952.1   8 DRLAIRTVRVLSVDQVASANSGHPGAPLGLAPAAHVVWKQLRLN-PSNPNWINRDRFVLSNGHACALLYSLLHLTGYDFTLDDLKHFRQLNSKT 100
                      67899*********************************998776.************************************************* PP

                      -SS--TTTSTT--S---STTHHHHHHHHHHHHHHHHHHHH-BTTB-S----EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEESSEETTE CS
  Transketolase_N  96 pGhPelghtagvevttGPLGqGianavglalaektlaatynkpgfdivdhytyvilgDgclmeGvsseasslagtlkLgkLivlyDdnkisidG 189
                      pGhPe+g  +g+e ttGPLGqGi+navgla+a++++aatynkp+f+i+d+yt+++lgDgcl+eGvssea+slag+l+Lg+Li++yDdn+isidG
       CCD22952.1 101 PGHPEYG-LPGIELTTGPLGQGISNAVGLAIAQANFAATYNKPNFTISDSYTFAFLGDGCLQEGVSSEACSLAGHLQLGNLIAIYDDNQISIDG 193
                      *****65.79************************************************************************************ PP

                      EGGGT--S-HHHHHHHTT-EEEEE.TTTT-HHHHHHHHHHHHH-TTS-EEEEEE--TTTTSTTTTTSGGGTSS---HHHHHHHHHHTTS-TT-T CS
  Transketolase_N 190 eteisftedvakrfeaygWhviev.edgedveaikaaieeakaekdkPsliklrtviGygspakagtedvhGapLgedevaalkkklGfdpeks 282
                      +t++sftedv kr+eaygW+v++v ++++d+ + ++a+e+aka+k+kP+lik++t+iGygs +++gt +vhG++L+ d+v++lkkk+Gfdpeks
       CCD22952.1 194 DTAVSFTEDVLKRYEAYGWEVLTVeKGDDDLDSFSEALEKAKANKEKPTLIKVKTIIGYGS-LQQGTGAVHGTALKPDDVKQLKKKFGFDPEKS 286
                      ************************88999********************************.******************************** PP

                      S---HHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT--- CS
  Transketolase_N 283 fevpeevydaykekvae.gakaeeeWeekfaaykkkapeeaaelerrlsgelP 334
                      f+vp+evyd +k+ +++ g+k++eeW+++f++y+k +p++++el+rrl+g+lP
       CCD22952.1 287 FVVPQEVYDLFKRDITDpGKKLNEEWDRLFEQYQKDYPDLGKELARRLNGDLP 339
                      ****************99*********************************99 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.7
                      T-HHHHHHHHHHHHH-TTS-EEEEEE CS
  Transketolase_N 217 edveaikaaieeakaekdkPsliklr 242
                       d ++++aa + + ++k+ Ps+i+l+
       CCD22952.1 502 ADGNEVSAAYKMSIESKHTPSIIALT 527
                      5677899999999999999*999875 PP

>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.0   5.9e-49   1.5e-45       2     176 ..     355     532 ..     354     533 .. 0.98

  Alignments for each domain:
  == domain 1  score: 155.0 bits;  conditional E-value: 5.9e-49
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT........TEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGGHH CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg........egrvidsgisEqavlgfavGaalagpllviveaqFgdFangAqi 90 
                   ++a+rk ++ +l+++  e pe+++++aD++ +t++ +++  ++q+        +gr+i++g++E+++ ++++G+a+ g ++++++++F++F++    
    CCD22952.1 355 ALATRKLSQAVLEKINFELPELIGGSADLTPSTLTRWEHAIDFQPpstglgdySGRYIRYGVREHGMGAIMNGIAAFGANYRPFGGTFLNFVS---- 447
                   579******************************************************************************************.... PP

                   GGHHHHHCHHHHHT--EE.EEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  91 yadqairsgeakgklkvg.vvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   y   a+r ++a+++++v+ v t+++ig+gedGp+hq++e++ ++r++p+++v+rP+d +e+ ++++  i+++  +P++++l++++++
    CCD22952.1 448 YGAGAVR-LAALSGYPVIwVATHDSIGLGEDGPTHQPIETLTHFRALPNIQVWRPADGNEVSAAYKMSIESK-HTPSIIALTRQNVP 532
                   *******.**************************************************************65.79**********97 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   7.4e-11   1.9e-07       1     101 [.     546     641 ..     546     647 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 7.4e-11
                      TEEEEEETTSSEEEEEETTHHHHHHHHHHHHHTT...TTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCCTT CS
  Transketolase_C   1 gkaeilregkdvtlvayGsmveealeAaeeLeke...gisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeafdg 91 
                      g++  + e +dv+lv++Gs+v+ ++e a++L++    + +++Vv+l+ +  + ++  +       +l ++ ++v++ +++ + +  +    + +
       CCD22952.1 546 GYIIHDVEDPDVILVSTGSEVSLCVETAKKLAESvtnKRKVRVVSLPDFHTFNRQSKE------YQLSMLPDGVPILSVEVAATLGWGN--YSH 631
                      56778899*************************9999****************99987......8999999999999996655555555..777 PP

                      CSSEEEEEEE CS
  Transketolase_C  92 ldapvkrvgg 101
                       +  + r+g+
       CCD22952.1 632 AHFGIDRFGV 641
                      7777777665 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   6.8e-08   0.00017     113     177 ..     118     193 ..      14     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.8e-08
  DXP_synthase_N 113 sstsisaalGlavardlkge..........kkkvvaviGDgaltgGmafealnnigelk.kkllvilNdNemsisk 177
                      +  is a+Gla+a+               ++ + a +GDg l  G++ ea   +g+l+  +l+ i+ dN+ si+ 
      CCD22952.1 118 LGQGISNAVGLAIAQANFAAtynkpnftisDSYTFAFLGDGCLQEGVSSEACSLAGHLQlGNLIAIYDDNQISIDG 193
                     567899*****99955444334445555657999***********************97369***********975 PP

>> XFP_C  XFP C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.7e-06    0.0069      30      82 ..     550     602 ..     534     608 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.7e-06
       XFP_C  30 degeepdvvlagiGdeptlEvlaAvellreelpelkvrvvnvvdLmklqeese 82 
                 ++ e+pdv+l++ G+e+ l v  A +l ++ +++ kvrvv   d  + +++s+
  CCD22952.1 550 HDVEDPDVILVSTGSEVSLCVETAKKLAESVTNKRKVRVVSLPDFHTFNRQSK 602
                 45689**************999999999999999**********999887765 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.3e-05     0.034      99     224 ..     114     248 ..      93     253 .. 0.76
   2 ?   -0.7   0.0      0.22   5.6e+02     143     168 ..     452     477 ..     450     518 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.3e-05
                 E-SSTTTHHHHHHHHHHHHH..........HHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--E.EEEEEEESEETTEEHHHH-S---GGG..TTTT CS
       E1_dh  99 gngivgaqvplvaGialaak..........iegkkevailliGDgAanqGdvyealnlaalwklpv.ifvveNNkygisTeaekasaskeladrargvg 186
                 + g++g   + + G+a+a+           +   ++ ++++ GDg   +G   ea  la   +l   i +   N++ i  +++ +  ++++ +r  ++g
  CCD22952.1 114 TTGPLGQGISNAVGLAIAQAnfaatynkpnFTISDSYTFAFLGDGCLQEGVSSEACSLAGHLQLGNlIAIYDDNQISIDGDTAVSF-TEDVLKRYEAYG 211
                 556777776666688888888888888888888999************************99997769999*****9988776654.566677777777 PP

                 S-EEEEE.TTS.HHHHHHHHHHHHHHHHTTT--EEEEEEE CS
       E1_dh 187 ipglrVd.gnD.plavyeAvkfAaeraregkgpllielvt 224
                    l+V+ g+D      eA   A+    + ++p+li ++t
  CCD22952.1 212 WEVLTVEkGDDdLDSFSEALEKAKA---NKEKPTLIKVKT 248
                 7777775455504445555555543...446788887765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.22
                 HHHHHHHTT--EEEEEEEESEETTEE CS
       E1_dh 143 alnlaalwklpvifvveNNkygisTe 168
                 a+ laal ++pvi v     +g++ +
  CCD22952.1 452 AVRLAALSGYPVIWVATHDSIGLGED 477
                 6789**********999888888755 PP

>> Terpene_synth  Terpene synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00023      0.59      97     127 ..      67      97 ..      49     102 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00023
                    BHHHHHHHHHHHHHTT----GGGGGGGE.ET CS
  Terpene_synth  97 dletvAlaFrLLRqhGydvssdvFkkFkdee 127
                    + +++Al + LL + Gyd + d +k+F++ +
     CCD22952.1  67 NGHACALLYSLLHLTGYDFTLDDLKHFRQLN 97 
                    779************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 5102.65
//
Query:       CCD22953.1  [L=215]
Description: hypothetical protein NDAI_0A07990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-06   27.0   2.2    5.3e-06   26.3   2.2    1.4  1  zf-CCHC         Zinc knuckle
  ------ inclusion threshold ------
      0.017   15.4   0.0       0.03   14.6   0.0    1.4  1  Retrotrans_gag  Retrotransposon gag protein
      0.032   14.6   0.4      0.054   13.9   0.4    1.3  1  eIF3g           Eukaryotic translation initiation factor 3 su
       0.26   11.1   3.2       0.47   10.2   3.2    1.4  1  zf-C2H2_10      C2H2 zinc-finger
       0.27   11.0   2.1       0.58    9.9   2.1    1.5  1  zf-CCHC_5       GAG-polyprotein viral zinc-finger


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   2.2   1.5e-09   5.3e-06       2      18 .]     195     211 ..     194     211 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.5e-09
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                  Cy+C+e+GH+a  Cp+
  CCD22953.1 195 RCYRCNETGHFAAKCPS 211
                 6***************6 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   8.2e-06      0.03      26      87 ..      59     118 ..      41     129 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 8.2e-06
  Retrotrans_gag  26 sesWkdlkkaflktflpserkdqleeelsslrQgtesvreYvtrfktladqldevlteeaki 87 
                      +s++d+kk++++   + + + ++ + + s++     v++Y +rf++l + l+ +++  + +
      CCD22953.1  59 LKSFDDFKKVMMSASTN-SPYWKSAKAITSIKF-GGDVEDYNRRFHKLKSSLPANFHSPEVL 118
                     689*********99999.556666666******.99****************9866665555 PP

>> eIF3g  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.4   1.5e-05     0.054      91     123 ..     180     213 ..     140     214 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.5e-05
       eIF3g  91 ekekaklkkkekklvkCriCk.gdHfTskCPykd 123
                 +  +++++++ ++  +C  C+   Hf +kCP k+
  CCD22953.1 180 NPLANRITQNITSNSRCYRCNeTGHFAAKCPSKS 213
                 3333444444334489****7699*******996 PP

>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.2   0.00013      0.47       8      21 ..     198     211 ..     192     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00013
  zf-C2H2_10   8 YChetGHtRAkCek 21 
                  C+etGH  AkC  
  CCD22953.1 198 RCNETGHFAAKCPS 211
                 5***********86 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.1   0.00016      0.58       3      21 ..     194     212 ..     192     214 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
                 -B-TTT-SSBS-TTT---S CS
   zf-CCHC_5   3 glCpRCkkgkHwardChsk 21 
                  +C RC    H a  C sk
  CCD22953.1 194 SRCYRCNETGHFAAKCPSK 212
                 59****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1730.69
//
Query:       CCD22954.1  [L=76]
Description: hypothetical protein NDAI_0A08000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       995  (0.0554967); expected 358.6 (0.02)
Passed bias filter:                      133  (0.00741815); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 638.94
//
Query:       CCD22955.1  [L=393]
Description: hypothetical protein NDAI_0A08010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-08   34.9   2.2    3.5e-05   23.9   0.2    3.2  2  CIMR           Cation-independent mannose-6-phosphate recepto
    2.7e-05   24.2   0.6    4.4e-05   23.5   0.6    1.4  1  ATG27          Autophagy-related protein 27
    5.9e-05   22.8   0.0    0.00011   21.9   0.0    1.5  1  PRKCSH_1       Glucosidase II beta subunit-like protein
    9.3e-05   21.6   0.0    0.00013   21.2   0.0    1.1  1  Man-6-P_recep  Mannose-6-phosphate receptor


Domain annotation for each model (and alignments):
>> CIMR  Cation-independent mannose-6-phosphate receptor repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.2    0.0012       5.3      85     142 ..     113     180 ..      45     181 .. 0.60
   2 !   23.9   0.2   7.9e-09   3.5e-05       3      48 ..     186     231 ..     184     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0012
        CIMR  85 khfyinvCk.peakiegCp..saaavClvdk...dksvNLGkvqsspqae....dgsiqlsYvnGdkc 142
                  +f +++C+ p +k+e  +  + ++   +d+   +k + +G + ++p+ +    + +++l+Y nG  c
  CCD22955.1 113 TNFTLSICSsPVTKTEEDQlsNLTGGYYIDQkdsSKLISIGNFATEPKIMgppnNKKLTLKYENGSMC 180
                 46888999875555555554244555666663113335679999999986555478899999999998 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 7.9e-09
        CIMR   3 qratvirFvCnetaledapvflkedigdcsylFewetalACveked 48 
                 ++at ++FvC++++  +a +    +  dcsy+Fe +  +AC+  ++
  CCD22955.1 186 KKATLLNFVCDRDISTKAQISYIGSLADCSYFFEVRSIYACPTSNK 231
                 68999*********8886665555558***************4433 PP

>> ATG27  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.6   9.7e-09   4.4e-05      51     211 ..     111     251 ..      55     276 .. 0.62

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 9.7e-09
       ATG27  51 tnttytldiCeplkkkkdvkkedqCpkgtrvCgitrvikkdekdeitqvipiggksldpkvtrlkesdekeglrlelkggky...gkkkqkaiieflCd 146
                   t++tl iC +  +k   ++edq    +++ g   +     +++ ++ i+i  ++++ + + ++   ++++l+l++++g+    g+ k  + ++f+Cd
  CCD22955.1 111 YDTNFTLSICSSPVTK---TEEDQL---SNLTGGYYID----QKDSSKLISI--GNFATEPKIMGPP-NNKKLTLKYENGSMcpnGRDKKATLLNFVCD 196
                 3789999999543332...334444...3333333333....3467899999..5556666555443.6688******8877796666666778****7 PP

       ATG27 147 eksl..kfksydeeeeeekdvlrlewktkyACekaekdkkdsskkkeksgwGfFtwlfiilflataa 211
                  +       sy ++     + + +e+++ yAC +++k+++        + +G    +f i+f+++++
  CCD22955.1 197 RDIStkAQISYIGSL--ADCSYFFEVRSIYACPTSNKENEV-------NVVGI---FFGIFFVFFLV 251
                 332221346777765..6788************87666554.......56774...33333333333 PP

>> PRKCSH_1  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.5e-08   0.00011      64     133 ..     148     231 ..      78     238 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.5e-08
                 TTEEEEEEEEEE.........TTEEEEEE-SB-TTSSC-EEE.EEEEE-S....S-EEEEEEEEETTEEEEEEEEGGG--XXXX CS
    PRKCSH_1  64 ddisiGefkkqe.........gnklkyekGakCWnGPvRsai.veveCGd....enelvsvseaekCeYllkvkspaaCsnvll 133
                 + isiG+f+            + +lkye+G+ C nG  ++a   ++ C +    + ++  +     C Y ++v+s  aC ++  
  CCD22955.1 148 KLISIGNFATEPkimgppnnkKLTLKYENGSMCPNGRDKKATlLNFVCDRdistKAQISYIGSLADCSYFFEVRSIYACPTSNK 231
                 4588999987668999998777889************9999626899975222145666677889**************55444 PP

>> Man-6-P_recep  Mannose-6-phosphate receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.9e-08   0.00013      45     174 ..     110     246 ..      69     265 .. 0.63

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 2.9e-08
  Man-6-P_recep  45 kdkytyklrvCre.veesa.....edagliqidkkdkketv.iGrinetqvldG...sdWilliykggdeyeshckkekrkalimisCnkkvlade 130
                    + +  ++l +C+  v++++     + +g   id+kd+ + + iG+++    + G   ++ + l+y++g+       ++k+ +l+   C+++ ++++
     CCD22955.1 110 DYDTNFTLSICSSpVTKTEedqlsNLTGGYYIDQKDSSKLIsIGNFATEPKIMGppnNKKLTLKYENGSMCP--NGRDKKATLLNFVCDRD-ISTK 202
                    3355678899975256655433322245556777766554349*997655444433356799******5544..34778889999*****5.4445 PP

  Man-6-P_recep 131 ltlvveerekeedcfylfeldssvaCpkees..klsvGsillivll 174
                     ++    +    dc y+fe+ s  aCp++++  ++ v  i+  +++
     CCD22955.1 203 AQI--SYIGSLADCSYFFEVRSIYACPTSNKenEVNVVGIFFGIFF 246
                    554..567899***************98765115666566655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3219.89
//
Query:       CCD22956.1  [L=457]
Description: hypothetical protein NDAI_0A08020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-54  183.0   0.0    6.4e-54  182.5   0.0    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    5.2e-40  136.2   0.0    1.2e-39  135.1   0.0    1.6  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    3.1e-14   53.1   1.8    3.1e-14   53.1   1.8    2.5  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    0.00044   20.3   0.1      0.011   15.8   0.1    2.4  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
        1.2    9.0   7.2      0.062   13.2   0.9    2.1  3  GTP_EFTU_D4  Elongation factor Tu domain 4


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.5   0.0   1.8e-57   6.4e-54       1     190 [.       5     232 ..       5     236 .. 0.93

  Alignments for each domain:
  == domain 1  score: 182.5 bits;  conditional E-value: 1.8e-57
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH.HHHST............HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHH CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgeka.eeerv............lDtlkeErergiTiksaaisleketkkylinliDtPGHvdFske 86 
                 k+++n+++ighvD+GK+T+t++L+yk+g i+k++ ++ e+e++            lD+lk+ErergiTi++a +++e  t ky++++iD+PGH+dF+k+
  CCD22956.1   5 KSHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKfEKEAAelgkgsfkyawvLDKLKAERERGITIDIALWKFE--TPKYEVTVIDAPGHRDFIKN 101
                 579*********************************964344478999*****************************..******************** PP

                 HHHHHHT-SEEEEEEETTTB.......STHHHHHHHHHHHHTTTE.EEEEEESCGST...HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEB CS
    GTP_EFTU  87 virglrvlDgavlvvdaveG.......vepqteevlrlalkegvp.iivfiNKmDrl...kaelkeiveevkqklsrkeeklekygekgekevpvvfgS 174
                 +i+g++++D+a+l+++   G          qt+e++ la ++gv+ +iv++NKmD +   +a+++ei +e   ++      ++k+g++ + +vp+v++S
  CCD22956.1 102 MITGTSQADCAILIIAGGVGefeagisKDGQTREHALLAFTLGVRqLIVAVNKMDSVnwsEARFQEICKETA-NF------IKKVGYNPK-TVPFVPIS 192
                 ******************9999999999*******************************************9.88......8******96.******** PP

                 TTTTBTHH........................HHHHHHHH CS
    GTP_EFTU 175 alkgegvk........................tllealve 190
                 +++g+++                         tllea++ 
  CCD22956.1 193 GWNGDNMIepttnapwykgweketksgvvkgkTLLEAIDA 232
                 *****98878888888888888888888888889988876 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.0   3.3e-43   1.2e-39       2     111 ..     332     439 ..     331     440 .. 0.98

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 3.3e-43
                  -EEECCEEEEEEESSS..SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEEEECT CS
  GTP_EFTU_D3   2 ikphtkfeAqvyilekerhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFaiReg 99 
                   k +++f+A v++l++  +++i agY+pvl+++ta++++k+ eLl+k d++++k+ e++p+f+k+Gd++ v+  ++kp+++e + +yp+lGrFa+R++
   CCD22956.1 332 PKGAESFNATVIVLNH--PGQISAGYSPVLDCHTAHIACKFDELLEKNDRRSGKKLEDSPKFLKSGDAALVKFVPSKPMCVEAFADYPPLGRFAVRDM 427
                  57899***********..******************************************************************************** PP

                  TCEEEEEEEEEE CS
  GTP_EFTU_D3 100 grTvaaGvvtei 111
                  ++Tva+Gv++++
   CCD22956.1 428 RQTVAVGVIKSV 439
                  **********98 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.85     3e+03      12      37 ..       3      26 ..       2      47 .. 0.77
   2 !   53.1   1.8   8.7e-18   3.1e-14       1      72 [.     258     323 ..     258     325 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.85
                 EEETTEEEEEEC.TCTTSEEEEEEEEE CS
  GTP_EFTU_D2 12 tlkkGdevrilg.ndtskkeivtriss 37
                 + k   +v+++g +d++k+   t+ + 
   CCD22956.1  3 KAKSHVNVVVIGhVDSGKS---TTTGH 26
                 5566667889999999888...66555 PP

  == domain 2  score: 53.1 bits;  conditional E-value: 8.7e-18
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdt 72 
                  Gtv  grv++G++k+G+ v + +      +   t+++s+e++he++++ v+g+n+G++v+ + +++ i++G++
   CCD22956.1 258 GTVPVGRVETGVIKPGMVVTFAPaG---VT---TEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKE-IRRGNV 323
                  99*******************7744...45...*********************************.****98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   3.1e-06     0.011       2      83 ..      10     116 ..       9     154 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.1e-06
                 EEEEESTTSSHHHHHHHHH...............T................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt...............g................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgka 69 
                 v+++G+  +GKSt    l+               +                +k +++++ g T+di   ++++ + e++++D pG          +++ 
  CCD22956.1  10 VVVIGHVDSGKSTTTGHLIykcggidkrtiekfeKeaaelgkgsfkyawvlDKLKAERERGITIDIALWKFETPKYEVTVIDAPG-HR-----DFIKNM 102
                 8999999999999999999666666665555555055555566666666556999****************98889*********.22.....224444 PP

                 HHHHHCTSEEEEEE CS
    MMR_HSR1  70 flaleeadlillvv 83 
                 +    +ad ++l++
  CCD22956.1 103 ITGTSQADCAILII 116
                 44444566666666 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.9     1e+04      67      84 ..       9      27 ..       5      32 .. 0.51
   2 ?   13.2   0.9   1.7e-05     0.062      21      82 ..     262     321 ..     257     324 .. 0.84
   3 ?   -2.9   0.1       1.8   6.4e+03      43      61 ..     432     450 ..     428     456 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.9
                 EEEEESS-.TTTS--TT-E CS
  GTP_EFTU_D4 67 aisiegki.vGrqikegdi 84
                  + + g++  G++   g  
   CCD22956.1  9 NVVVIGHVdSGKSTTTGHL 27
                 4444444444554444444 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.7e-05
                  EEEEEEEEEEETT-EEEETTE.EEEEEEEEEETTEEESEEETT-EEEEEEESS-TTTS--TT CS
  GTP_EFTU_D4  21 vGvevlgGvikpgvklikedGrevGeilqiqdkgkkleeakaGqevaisiegkivGrqikeg 82 
                  vG +v +Gvikpg+ +  +      e+++++ ++++le+   G++v+  +++    ++i  g
   CCD22956.1 262 VG-RVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVS-VKEIRRG 321
                  88.9**********99876666889***********************999754.3556555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.8
                  EEEEEEEEEETTEEESEEE CS
  GTP_EFTU_D4  43 evGeilqiqdkgkkleeak 61 
                   vG+i+++ +++k+ ++ k
   CCD22956.1 432 AVGVIKSVVKSDKAGKVTK 450
                  4666666666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3659.66
//
Query:       CCD22957.1  [L=312]
Description: hypothetical protein NDAI_0A08030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-10   40.0   4.2    7.8e-07   28.8   0.0    3.3  4  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
      0.086   12.9   3.8       0.15   12.2   3.8    1.3  1  RP-C_C    Replication protein C C-terminal region


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.96   8.6e+03       1       8 [.      14      21 ..      14      22 .. 0.87
   2 !   11.2   0.1   2.7e-05      0.24      29      66 ..      73     112 ..      64     116 .. 0.80
   3 ?   -1.1   0.1      0.19   1.7e+03      11      26 ..     178     193 ..     175     210 .. 0.66
   4 !   28.8   0.0   8.7e-11   7.8e-07       1      69 [.     243     306 ..     243     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.96
                EEEESETT CS
       RRM_1  1 lfVgnLpp 8 
                l+++nLp+
  CCD22957.1 14 LYLKNLPR 21
                799***96 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.7e-05
                 EEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTT.EEETT CS
       RRM_1  29 klvrd.etgkskgfafVeFeskedAekAlealng.kklgg 66 
                   v++ + ++ +  +f++F++ e A + +e +++   ++g
  CCD22957.1  73 VSVSKsNAKTLNSQCFITFTTVEKASQFKEDFDNkLLING 112
                 4555558899999*******************99445555 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.19
                 SHHHHHHHHHTTSCEE CS
       RRM_1  11 teeeLkelFskfGpik 26 
                 tee+++++ ++ +  +
  CCD22957.1 178 TEEQIYDIVKNLEAER 193
                 8999999988866554 PP

  == domain 4  score: 28.8 bits;  conditional E-value: 8.7e-11
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTT.EEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealng.kklggrel 69 
                 l V  Lp+dv+ee++ elF   G + +++l+r      ++ afVe+++  +A + +++l    + +g+e+
  CCD22957.1 243 LLVQHLPSDVSEEDVAELFTSEGFV-EVRLIRV-----RNLAFVEYNTIGQASATKKKLSDiFNWKGKEI 306
                 67999********************.******8.....******************99987666666665 PP

>> RP-C_C  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.8   1.7e-05      0.15       4      73 ..     160     230 ..     158     259 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
      RP-C_C   4 qleqrfralverlp.rkatlaeleelleelealreevenalesalkaenssanesqnerhiqnsnpdssse 73 
                 +l++++r+l++rl+ + +t +++ +++++lea r++ +++le+++++++++a+++ +++  +  +++ +++
  CCD22957.1 160 KLKRTLRRLRRRLRvKGKTEEQIYDIVKNLEAERTTKTRILENKDEKKKTKASKASIDKSSTMQKTKLAIK 230
                 578999********66777889*******************999999999999887776666666642222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2085  (0.116292); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2387.10
//
Query:       CCD22958.1  [L=163]
Description: hypothetical protein NDAI_0A08040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.071   12.9   3.4       0.11   12.3   3.4    1.3  1  DUF724           Protein of unknown function (DUF724)
        7.8    5.5   5.3        2.3    7.3   1.9    1.7  2  AI-2E_transport  AI-2E family transporter


Domain annotation for each model (and alignments):
>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.4   1.2e-05      0.11      90     178 ..      22     110 ..      20     122 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.2e-05
      DUF724  90 lqsrlnkLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledve 178
                 +++r++ L s+kd qtk  +++ +++ + ++++s k++ + +++++++ i+   + lal k   +++++ + + + ++++++e++++++
  CCD22958.1  22 PEDRIKHLASFKDIQTKRFQQIAGANVNNSNDNSIKNSKNPSVEDIKNLISSNPTSLALQKDLIKKMKNALQKDHFDEQSIQEQINSMN 110
                 889*******************************99999***********977666666665555555555555555555555555554 PP

>> AI-2E_transport  AI-2E family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1     0.088   7.9e+02      77     108 ..      12      40 ..       5      63 .. 0.39
   2 ?    7.3   1.9   0.00026       2.3      76     135 ..      64     122 ..      61     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.088
  AI-2E_transport  77 aqltqlvkslpayidslqnilnelpslleele 108
                      +q++++++++p    ++++++++++    ++ 
       CCD22958.1  12 KQIIKILQEFPEDRIKHLASFKDIQ---TKRF 40 
                      3444444444422222222222222...2222 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00026
  AI-2E_transport  76 iaqltqlvkslpayidslqnilnelpslleelenliqalkqslskilsnilssilnslls 135
                      ++ +++l++s p++++  +++++++++ l++ +  ++++ q+ +++++n++s+ +++ ++
       CCD22958.1  64 VEDIKNLISSNPTSLALQKDLIKKMKNALQKDH-FDEQSIQEQINSMNNLVSNKYKNYYK 122
                      677899**************************9.77999999999999999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2185  (0.12187); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1240.16
//
Query:       CCD22959.1  [L=663]
Description: hypothetical protein NDAI_0A08050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-22   78.5   0.2    3.3e-22   78.5   0.2    2.5  3  HGTP_anticodon  Anticodon binding domain
    2.9e-07   30.6   0.0      1e-06   28.8   0.0    2.1  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P


Domain annotation for each model (and alignments):
>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       1.5   1.3e+04      31      46 ..     136     151 ..     124     157 .. 0.65
   2 ?   -1.4   0.1       0.3   2.7e+03      49      80 ..     466     497 ..     448     505 .. 0.72
   3 !   78.5   0.2   3.6e-26   3.3e-22       1      93 [.     545     636 ..     545     637 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.5
                     EEEEESSSSTHHHHHH CS
  HGTP_anticodon  31 rvelddsnesigkkir 46 
                     ++e+d ++++ +kk++
      CCD22959.1 136 NAEVDADKKKRKKKVK 151
                     4566666666666655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.3
                     HHTT-SEEEEE-HHHHHHTEEEEEETTTCEEE CS
  HGTP_anticodon  49 dllgipfavvvGekelekgtvtvrdrdtreqe 80 
                      ++ i +  v G+ el+++ +t+++r++ e++
      CCD22959.1 466 GKIVIEVEGVEGAAELDDKFITIEKRTKVEHV 497
                     45555555666788888888888888877665 PP

  == domain 3  score: 78.5 bits;  conditional E-value: 3.6e-26
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTCEEEEEETTHHHHHHHH CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtreqervsldelveklke 93 
                     +v+++pl+++++ l+++ k++ + Lr++ i  ++dds+ sigk++++ d+lg+pf v+++++++++++vt+r+rd+++q+r s++e+++++++
      CCD22959.1 545 KVLLVPLSNHKD-LQPVTKEVSKILRKEQIPFKVDDSGVSIGKRYARNDELGTPFGVTIDFESVRDNSVTLRERDSTKQVRGSIEEIIKAIRD 636
                     7999****9777.****************************************************************************9985 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.1e-10     1e-06      12      89 ..     222     300 ..     217     522 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.1e-10
                   EE-SSSHHHHHHHHHHHEE..EBGGSSEEEEEEEEEEBTTTSTBC.TTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHH CS
                   xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  12 iLkPtneetfvelirdevl..rskrLPlklyqiqtkyRdEksdsr.GLlRvreFhqkdgyvfhaeaslddslrdlikaisr 89 
                   +L+P+  ++    +++  l  ++ + P+  + i+  +R+E s  r GLlRvreF + + + f+ + +      d +k+i+ 
    CCD22959.1 222 YLRPETAQGQFLNFNKL-LefNNSKTPFASASIGKSFRNEIS-PRaGLLRVREFLMAEIEHFVDPLDKSHPKFDEVKDIKL 300
                   79999999999999976.55755559***************9.666****************9974444444455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 4695.58
//
Query:       CCD22960.1  [L=189]
Description: hypothetical protein NDAI_0A08060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.073   13.3   0.0       0.19   12.0   0.0    1.7  2  Ribosomal_L31  Ribosomal protein L31


Domain annotation for each model (and alignments):
>> Ribosomal_L31  Ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     1e-05      0.19      11      66 ..      48     107 ..      39     108 .. 0.80
   2 ?   -2.9   0.1      0.46   8.3e+03      18      27 ..     134     143 ..     122     154 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1e-05
  Ribosomal_L31  11 evvvkcacgeefltrStlkekpeikvdvcsksHPfYtGkq...klvdt..aGrvekFkkry 66 
                    +v v+ ++g+ +  +S    k+e+++  ++++ P+++ ++    +vd+  +G  ++Fk+ry
     CCD22960.1  48 DVMVELSDGSVIRRKSQ-FPKEELRLIQDQRNNPLWNQSRsdlIVVDAnaGGSMDRFKQRY 107
                    46777779999999999.799****************755455456655599********* PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.46
  Ribosomal_L31  18 cgeefltrSt 27 
                    ++++   +S 
     CCD22960.1 134 TDKKAANKSI 143
                    3333344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1432  (0.0798706); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1334.44
//
Query:       CCD22961.1  [L=664]
Description: hypothetical protein NDAI_0A08070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-36  123.9   0.3    1.9e-35  122.7   0.3    1.7  1  Tau95     RNA polymerase III transcription factor (TF)IIIC su
    1.7e-25   89.6   0.0    3.9e-25   88.5   0.0    1.7  1  Tau95_N   Tau95 Triple barrel domain
  ------ inclusion threshold ------
       0.15   12.2   0.3       0.56   10.4   0.3    2.0  1  FliE      Flagellar hook-basal body complex protein FliE


Domain annotation for each model (and alignments):
>> Tau95  RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7   0.3   3.2e-39   1.9e-35       2     140 .]     239     402 ..     238     402 .. 0.90

  Alignments for each domain:
  == domain 1  score: 122.7 bits;  conditional E-value: 3.2e-39
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXX-----EE-........--S--TT-----...................HHHHHHHHHHHHH CS
       Tau95   2 lpPplFsridlpfnykykqnplskvvk..kklvntsksrkkktivlk........Ptepeeelvkelkek................kelqkaveelkkl 74 
                 +pPp Fs + +pf ykyk npl+++++       +++  k+++ +l+        P ep+e+l+k++k                  ++l+++++ l+kl
  CCD22961.1 239 PPPPKFSMVGYPFLYKYKGNPLATKKSngD-SEVKKSYIKNYQLFLHdigpiakiPIEPHESLQKDYKIAqetqvypgtksdsgfyQSLKECLSILNKL 336
                 79********************99888642.3333334555555565788999**999999999999877999************************** PP

                 HHH-SEEEHHHHHTTS-GGGTTTHHHHGGGTEEEE-SSTTTTEEEETT--TTS-GGGGGG-EEE-- CS
       Tau95  75 feerPiwtrraLknklekkerkklklalpyvaYyfksGPWrdlwvrfGyDPrkdpeariYQtldfr 140
                 fe+rPiw++r++   ++k+ +++lk al++v+Y f+ GPWr++++++G+DPr++pe+ +YQt++f+
  CCD22961.1 337 FEKRPIWVKRHIDGLIPKEIHHTLKIALALVSYRFSMGPWRNTYIKLGIDPRTSPEYGKYQTEYFK 402
                 ****************************************************************97 PP

>> Tau95_N  Tau95 Triple barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   6.6e-29   3.9e-25       2     127 .]      50     180 ..      49     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 6.6e-29
                 EEEESS--....SSHHHHHHTTT-HHHHHHHHHH...HHH-G--EE-S-TT-.......TT.---EE-EE..E----EEEEE.......ETTTT..... CS
     Tau95_N   2 aveyPgiv....knvdkaietlgglekiskalka...sekkkslelrlrped.......pf.shpilger..aptnnlllkvtvpkrtgkkrkrgsses 83 
                 + e+P++v    +++ kai+++ggl+k+++a+k+    e +k+lel+l+ ++       +f +hpi+g+r  +++++++lk+++pk+t  k++      
  CCD22961.1  50 SLELPLNVtsksSSIHKAIDMCGGLSKVKEAFKEpgtVETQKGLELYLNTGKnerhadiFFnEHPITGKRvpFRDDSIILKISMPKGTLSKHNG----- 143
                 689*****999999********************77744455*******6633455556557********8999************99998888..... PP

                 .....................EEEEEEEEEEEEE-TTSGGG--- CS
     Tau95_N  84 ekekdssakelrslednkkkykievvGviektvrFremaDFqys 127
                       +++ + ++  + ++yk+++v ++++t+rFrem+DFqy+
  CCD22961.1 144 ------DIQASIASL-DPNDYKVTPVSIVDNTIRFREMSDFQYR 180
                 ......234444444.7899**********************96 PP

>> FliE  Flagellar hook-basal body complex protein FliE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   9.3e-05      0.56      12      50 ..       4      42 ..       1      48 [. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9.3e-05
        FliE 12 aaaasaesFasvLksaleevnetqkeaeelaeafalGes 50
                ++++++++++ vL+++le++n++ ++ +e ++a+a+  +
  CCD22961.1  4 TNNNENNTYGVVLSESLENTNASDQQNDESTTAMAKEYT 42
                5667778***************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 4724.48
//
Query:       CCD22962.1  [L=410]
Description: hypothetical protein NDAI_0A08080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-59  201.4   0.0      1e-56  192.4   0.0    2.1  1  PP2C      Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.4   0.0   5.8e-61     1e-56       8     256 ..      42     370 ..      38     372 .. 0.83

  Alignments for each domain:
  == domain 1  score: 192.4 bits;  conditional E-value: 5.8e-61
                 ECCCCSSHHEEEECCCCTCTT...........CCCCCCEEEEEEEEESSSHHHHHHHHHHH................HHHHHHHHCHTTH......... CS
        PP2C   8 lqgarksmedahislanless...........sgkssvsffavfdghggseaakyarehle................eilksqksfeele......... 70 
                 +qg+r + edah+ l++                +k s s+f+vfdghgg++++++ +                                +         
  CCD22962.1  42 MQGYRLTQEDAHLVLNEDDILhvrfynpfkliTEKLSLSVFGVFDGHGGEDCSNFISGGGSdpknglakwiaysfenH-----------Kygafkdvhl 129
                 677777777777766655444666677777777777777888888888888887765443333444443222222220...........1334555555 PP

                 ......................HHHHHHHHHHHHHHHHHHHHHHHHCHCCT-EEEEEEEEEETTE.EEEEEESS-EEEEEETTEEEEECS---STTSHH CS
        PP2C  71 ......................kleqalrksfladtdeelksskantepsksGstavvalirgtk.lyvAnvGDSravLcrkgnakkeltedHkpsded 146
                                       +  q+l+++f+  +d+el++   n    ++Gsta+v++i + + +y+ n+GDSr++L++k+n  k++++dHkp++  
  CCD22962.1 130 dsqadsknvkrkhqrcfrtlqgLITQILKDAFML-QDNELYRYFGN---NSCGSTAIVSVIINGEyIYTVNCGDSRCILSSKNNGVKTMSFDHKPQHIG 224
                 5555555566777777777879999*********.99999996665...8*******988888777********************************* PP

                 HHHHHHHTT--EEECCEEETTTBSBSB-EE-GGGTCCCC.....................................CCSTSB---EEEEEEE-TT.EEE CS
        PP2C 147 EreRIeeaggsvsngegrvngsLavsRalGDlelkpket.....................................eeqlvsaePdvtsvkltee.def 207
                 E  RI+++gg+vs   grv g+La+sRa+GD+++k+++                                      +e +v+ ePdv ++k++++ def
  CCD22962.1 225 ELLRINDNGGTVS--LGRVGGVLALSRAFGDFQFKRGVPytsgknksklhritsgnnnntngnnnlhngnrngtpaQESQVTVEPDVLMHKIDYKrDEF 321
                 *************..********************977699***********************************999******************** PP

                 EEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCHHC CS
        PP2C 208 liLacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiargsed 256
                 liLacdG+wdv+++++++ +v+++l+++ +++ + ++++d++i ++ ++
  CCD22962.1 322 LILACDGIWDVYNNKQLCKFVKYHLSAGVKLDGIVTKVLDHGIGQADSN 370
                 ***************************99************99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3193.77
//
Query:       CCD22963.1  [L=495]
Description: hypothetical protein NDAI_0A08090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.5e-201  668.6   0.1   5.2e-201  668.4   0.1    1.0  1  Glyco_transf_20  Glycosyltransferase family 20
     0.0012   18.6   0.3     0.0031   17.2   0.1    1.7  2  Glyco_transf_5   Starch synthase catalytic domain
  ------ inclusion threshold ------
      0.072   12.6   1.1          1    8.9   0.2    2.7  2  Glycos_transf_1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  668.4   0.1  8.6e-205  5.2e-201       2     472 ..       9     472 ..       8     474 .. 0.98

  Alignments for each domain:
  == domain 1  score: 668.4 bits;  conditional E-value: 8.6e-205
                      -EEEEEEE-SECEEE-S.SCG..EEECCGSSHHHHHCCCHHCCC-EEEEEEECCES-CCC..HCCCCHHHCCCCCEEEEEE-HHHHHHHCCCHH CS
  Glyco_transf_20   2 klvvvsnrlplklereseeekeeyelkkssgglvsalkglkeetevvwvgwlgvevdeseeakekvskeleekfsvvpvflsdekveeyyngfs 95 
                      + +vvsnrlp+++ +++e+++  y++k+ssgglv+ l+glk++ +++w+gw+g+e++ ++  ++kv+++l +kf+++pvf+sde+++ +yngfs
       CCD22963.1   9 NIIVVSNRLPVTITKNEETGQ--YDYKMSSGGLVTGLQGLKKTSSFQWFGWPGLEIPVED--QAKVKRDLLQKFNAIPVFMSDEIADLHYNGFS 98 
                      679*********999985555..*************************************..9******************************* PP

                      HHCHHHHHTT-GG....G----HHHHHHHHHHHHHHHHHHHCC--TT-EEEEESGGGTTHHHHHHHCCTT.....SEEEEEE-S----HHHHTT CS
  Glyco_transf_20  96 ksvLWpllHYklpdsseekefersawdaYvkvnklFAdkiveeikdgdliwvhDYhLmllPellRkkled.....akigfflHiPFPsseifri 184
                      +s+LWpl+HY++     e +f++saw aY ++n++F+d i++ +k++d++wvhDYhLmllP++l+k ++      +k+g+flH+PFPssei+ri
       CCD22963.1  99 NSILWPLFHYHPG----EITFDESAWLAYNEANRMFCDVICQTLKEDDVVWVHDYHLMLLPQMLKKWINAkqlmnIKLGWFLHTPFPSSEIYRI 188
                      *************....************************************************9998888888******************* PP

                      STTHHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSSEEEECTTEEEEETTEEEEEEE------HHHHHHHCCSCHHHHHHHHHHHHT.TTSEE CS
  Glyco_transf_20 185 LpvreeilegllgadliGFhtedyarhFlsccsrllgleveskrggveykgrkvsvkalpigidverlesalkkesvsekvkelkerfenkkkl 278
                      Lpvr+eil+g+l++dl+GFht+dyarhFls+++r+l++++ ++  gvey+g+ v+v a+pigidv+++++ lkk++v ++++ lk++f++ +k+
       CCD22963.1 189 LPVRQEILRGVLSCDLVGFHTYDYARHFLSAVQRVLNVNTLPN--GVEYEGNFVNVAAFPIGIDVDKFTQGLKKKEVIQRIQDLKKKFKG-CKI 279
                      *******************************************..8******************************************88.8** PP

                      EEEEEEC-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEEEEB-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEEES---HHHHHHHHHH CS
  Glyco_transf_20 279 ilgvDrlDyikGvkqkllaferfLeeypelrgkvvlvqiavpsredveeyqelekeveelvgrINgefgtldytPvvylersldfeeliallaa 372
                      i+gvDrlDyikGv+qkl+++e fL+e+pe++gkvvlvq+avpsr+dveeyq l++ v+elvgrINg+fgt++++P++++++s++feeli+l+a+
       CCD22963.1 280 IVGVDRLDYIKGVPQKLHSMEVFLNEHPEWIGKVVLVQLAVPSRGDVEEYQYLRSVVNELVGRINGQFGTVEFVPIHFMHKSIPFEELISLYAV 373
                      ********************************************************************************************** PP

                      -SEEEE--SSBSS-CHHHHHHHCSTTT--EEEEETTBGGGGT-TTTSEEE-TT-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHT-HHHHHH CS
  Glyco_transf_20 373 advllvtslRdGmnlvakeyvvcqqekkgvLiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhdvqsWae 466
                      +dv+lv+s+RdGmnlv++ey++cq+ekkg+LiLSeFaGaaqsL+ +a++vNPw+++e+ae+i++aL++ +e+++ +++kl+k++sk+++++W e
       CCD22963.1 374 SDVCLVSSTRDGMNLVSYEYIACQEEKKGSLILSEFAGAAQSLN-GAMIVNPWNTDELAETIHNALTIADEKKAANWEKLYKYISKYTSAYWGE 466
                      ********************************************.88*********************************************** PP

                      HHHHHH CS
  Glyco_transf_20 467 sflsel 472
                      +f+ el
       CCD22963.1 467 HFVYEL 472
                      **9987 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   5.2e-07    0.0031     112     165 ..     124     172 ..      89     198 .. 0.81
   2 ?   -2.1   0.0      0.42   2.5e+03      51      94 ..     262     309 ..     241     344 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.2e-07
  Glyco_transf_5 112 aerfalfsraalelleklgwkpdvihahDWhtalvpallkelykerglfkkikt 165
                     +e   +f+ +++++l++     dv+ +hD+h +l+p +lk++ + + ++ +ik+
      CCD22963.1 124 NEANRMFCDVICQTLKE----DDVVWVHDYHLMLLPQMLKKWINAK-QLMNIKL 172
                     45556899999999999....8*******************95444.4444766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.42
  Glyco_transf_5  51 keleevaelskaaed.evevev...ekvkvaklkkdgvdvyfldnpef 94 
                     + ++++ +l+k++++ ++ v+v    ++k    k + ++v++ ++pe+
      CCD22963.1 262 EVIQRIQDLKKKFKGcKIIVGVdrlDYIKGVPQKLHSMEVFLNEHPEW 309
                     356777777778888877777434566666666667888888888875 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.062   3.7e+02      10      48 ..     272     309 ..     263     337 .. 0.83
   2 ?    8.9   0.2   0.00017         1      76     116 ..     357     397 ..     353     454 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.062
                      TTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCE CS
  Glycos_transf_1  10 gknekkkiilsvgrlekeKgvdllikafallkkqlnpnv 48 
                      +k ++ kii+ v rl++ Kgv + +++++ +  + +p++
       CCD22963.1 272 KKFKGCKIIVGVDRLDYIKGVPQKLHSMEVFLNE-HPEW 309
                      455888999************9999999988754.7776 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00017
                      GEEECCHSSSHHHHHHCESEEEEEESSBSS-HHHHHHHHTT CS
  Glycos_transf_1  76 iflgevsredleellknadifvlpsisEgfGivllEAmaag 116
                      ++++ ++ e+l++l+  +d+ +++s+++g+ +v +E++a+ 
       CCD22963.1 357 FMHKSIPFEELISLYAVSDVCLVSSTRDGMNLVSYEYIACQ 397
                      6778889999******************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3626.39
//
Query:       CCD22964.1  [L=505]
Description: hypothetical protein NDAI_0A08100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-66  222.7   0.0    6.1e-66  222.1   0.0    1.3  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    5.6e-15   55.6   0.9    1.2e-14   54.6   0.9    1.6  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
  ------ inclusion threshold ------
      0.051   12.5   0.0      0.087   11.7   0.0    1.3  1  DUF3533        Protein of unknown function (DUF3533)


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.1   0.0     1e-69   6.1e-66       1     213 []     154     380 ..     154     380 .. 0.98

  Alignments for each domain:
  == domain 1  score: 222.1 bits;  conditional E-value: 1e-69
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS............S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsd............d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaa 85 
                  Gi+++D++ +i++Gq++ i++a+g+++++i++++++q+               +  i+++++G + ++++ + ++f+e++ ++rt l++n +n+p+++
   CCD22964.1 154 GISAIDTMNSIARGQKIPIFSASGLPHNEIAAQICRQAGLVrptkdvhdgheeNfSIVFAAMGVNLETARFFKQDFEENGSLERTSLFLNLANDPTIE 251
                  89***********************************876689999*****98789****************************************** PP

                  HHHHHHHHHHHHHHHHH.TTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHH CS
                  xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  86 reasiytgitlAEyfrd.qgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvtta 182
                  r++++++++t+AEy+++ ++++vl i++++s +a+Alre+s++ +e+p+++gyp+y++++l+++yERag+++ r+Gs+t++++++++++D+++p+++ 
   CCD22964.1 252 RIITPRLALTTAEYLAYqTDRHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDL 349
                  ****************97899***************************************************************************** PP

                  HHHHSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 183 tlgitdgfivLdkklaqrkhfPainvlvSvS 213
                  t +it+g+i +d++l++++++P+invl S+S
   CCD22964.1 350 TGYITEGQISVDRQLHNKGVYPPINVLPSLS 380
                  *****************************98 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.9     2e-18   1.2e-14       3      69 .]      33      97 ..      31      97 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 2e-18
                   EEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBT.TSEEEEES CS
  ATP-synt_ab_N  3 qviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsr.GteVkrTG 69
                    v+Gp+v+ e+++   p ++++++  l++ g+ ++g++l++++d+++v+v+++t+G+++  t+V++TG
     CCD22964.1 33 GVNGPLVILEKVKF--PRYNEIVNLTLPD-GSIRQGQVLEVRGDRAIVQVFEGTSGIDVkKTTVEFTG 97
                   69************..7777777777779.*************************************9 PP

>> DUF3533  Protein of unknown function (DUF3533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.5e-05     0.087      78     166 ..     356     446 ..     327     464 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.5e-05
     DUF3533  78 seeeveelvhkekywgaivvkenateklyaal..sangassynstelleliyesgRdattvssyilpaltqleaaalakygsqllqqliqs 166
                  + +v +++h++ ++  i+v +  ++ + +a+    +++   +++++l   y+ gRda ++++++ + + ++e+++  ++ ++  +++i++
  CCD22964.1 356 GQISVDRQLHNKGVYPPINVLPSLSRLMKSAIgeGMTRKDHGDVSNQLYAKYAIGRDAAAMKAVVGEEALSIEDKLSLEFLEKFEKTFISQ 446
                 566899**************************8556778899***************************9999998877777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3889.79
//
Query:       CCD22965.1  [L=423]
Description: hypothetical protein NDAI_0A08110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-16   59.1  15.9    5.8e-16   58.5  15.9    1.2  1  Atg14            Vacuolar sorting 38 and autophagy-related su
  ------ inclusion threshold ------
       0.53    9.4   9.8       0.39    9.9   8.0    1.7  1  Phage_HK97_TLTM  Tail length tape measure protein
       0.58   10.6   0.0       0.58   10.6   0.0    2.7  3  PH_11            Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5  15.9   9.7e-20   5.8e-16       1     317 [.       3     308 ..       3     310 .. 0.79

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 9.7e-20
       Atg14   1 CplCerssrpfiCesClrngperlyelrerlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeiee 99 
                 C++C   +++++C +C++ +p+ l++l+ +l+ lk +++ +k k+++ l+  +     ++   ++ +k++    l+a l  r ++ k +  + +k+++ 
  CCD22965.1   3 CSVCLSERKRLYCGNCMNTSPNLLLKLHLKLILLKQQNARIKDKVNEVLNFAT-----NETSNSHDMKIDGENELQAGLILRDKLKKLQHFKEQKRNNR 96 
                 *************************************************9999.....44555555566666666666655555555555555666666 PP

       Atg14 100 kkkklaklsdklkkRrsdleslqneleerrkk.qiaklqdaik........rieqklsslssktlesrsslcselaklyglrrtsyergkwvfsknges 189
                  k +++++++ l ++r +++ lq el+++    +  ++ ++i         + ++ l++l+++   +r+s++ +l+ ++ +++           +++++
  CCD22965.1  97 IKFRIEQMNKRLDDKRTKIAELQVELKNSYSMaSTINIDTHIDaallherdELKRELTQLEKLVETKRISQINQLTDWFMIKK-----------RSDTH 184
                 66666666666666666666666666554322022222222225555555599999999**999999****************...........7889* PP

       Atg14 190 eesytIggiplpdlrdlnafpaeeIsasLsyiaqLlaLvshyLsirLPaeltlphscqpirplfiekslpklspeteseflegvalLayniawLcrtqg 288
                  ++y+I+  p+++ + ++++p  +   s+ ++++++ ++s   + +LP+  +  +s      l       + ++e   ++ e+ ++L  n++  cr+ +
  CCD22965.1 185 LVPYSISFEPIISMKSFHKIPRMVAIDSIAKMSHYIGILSKLINSKLPFDESIFQSSL----L-------TDYQEESIDIVEKQTKLLINVLETCRQLH 272
                 *************************************************998877777....3.......334999999******************** PP

       Atg14 289 vnslelept.......qldtlenlcdllklLysllv 317
                 + s + e         +l++l +++d ++l+y++++
  CCD22965.1 273 LMSSNNEKRndfygqlNLNWLLDQYDTDSLFYNMAT 308
                 998655544556777888899999999999998876 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   8.0   6.5e-05      0.39      60     127 ..      78     150 ..      71     173 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 6.5e-05
  Phage_HK97_TLTM  60 vkeklkklsleevadekdklkeslkeqnklvkeaeqkveelkkeldkyq.....vsingylvnkldskeeaik 127
                      +++klkkl+  + +  ++++k  + ++nk ++++++k+ el+ el++       + i+ ++   l  + +++k
       CCD22965.1  78 LRDKLKKLQHFKEQKRNNRIKFRIEQMNKRLDDKRTKIAELQVELKNSYsmastINIDTHIDAALLHERDELK 150
                      599*****************************************97543366554455555555544444444 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.3      0.41   2.5e+03      62      62 ..      84      84 ..      30     140 .. 0.57
   2 ?   10.6   0.0   9.7e-05      0.58      34     102 ..     214     288 ..     171     290 .. 0.79
   3 ?   -1.1   0.1      0.41   2.5e+03      24      42 ..     374     398 ..     353     420 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.41
       PH_11 62 k 62
                k
  CCD22965.1 84 K 84
                2 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 9.7e-05
       PH_11  34 kkvvkhviklSngseaklkadlisaalf..kidsirs....sksddllleistetkifflkgdsneeteeWveal 102
                 +k+ +++  lS+ ++ kl++d + ++    ++ + +s    +k+++ll+++  +++ ++l   +ne++++ + +l
  CCD22965.1 214 AKMSHYIGILSKLINSKLPFDESIFQSSllTDYQEESidivEKQTKLLINVLETCRQLHLMSSNNEKRNDFYGQL 288
                 556679999*********998666555533666666788899***************************999877 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.41
       PH_11  24 gvLeyYk......sekkkvvkhvik 42 
                  +L++Y+        k k+ khv  
  CCD22965.1 374 LNLSLYEgdsytkTRKGKNNKHVEN 398
                 4566666555544334444345433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1789  (0.0997825); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3227.80
//
Query:       CCD22966.1  [L=353]
Description: hypothetical protein NDAI_0A08120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2539.81
//
Query:       CCD22967.1  [L=401]
Description: hypothetical protein NDAI_0A08130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.7e-134  447.0   0.0   5.4e-134  446.8   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.8   0.0    3e-138  5.4e-134       2     342 .]      17     369 ..      16     369 .. 0.98

  Alignments for each domain:
  == domain 1  score: 446.8 bits;  conditional E-value: 3e-138
                   CCS-EEETTEEESSSEEE----S-TTTTTCS.HH.HHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEE CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapmtrlraldkgnvle.dlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvv 97 
                   +FkPik+gn++LknR+vm+p+tr+ra+++gnv++ ++a+eyy+qra+ ++t++ite++f++++ gg+dnapgiw++eq++ew+k+++ vh+++s+v+
    CCD22967.1  17 VFKPIKVGNNELKNRVVMPPLTRMRATHPGNVPNkEWAVEYYKQRAQAEGTMLITEGTFISAQAGGYDNAPGIWSQEQMNEWTKIIKGVHDKKSFVW 113
                   7************************************************************************************************ PP

                   EEEE--GGGS..SCSTCEC....SS.ESSSSSTTT-.....S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT- CS
  Oxidored_FMN  98 vqlwhlGreakseyladqe..vdspsdpvaldaqee....esaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksn 188
                   vqlw lGr+++ ++la+++  +ds+sd v++d++ +    +s++++  + ltk+eik++i+++v+AAk++i++g+Dg+eih+anGYLlnqFl+p sn
    CCD22967.1 114 VQLWALGRQSFPDTLARDGlrYDSASDAVYMDEESKtkaeKSNNPQ--HGLTKDEIKEYIKNYVQAAKNSIACGADGIEIHSANGYLLNQFLDPISN 208
                   ******************999*************999888889999..************************************************* PP

                   ---STTS.SSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHH...HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCC.. CS
  Oxidored_FMN 189 krtDeyg.GslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaet...aqkivllkelekrlkdgkklalvhaaeprkrgagsvrte.. 279
                   krtD ++ Gs+enRarF+levvda+++a+ge++vg+RlSp++ +++++++a+    aq++++l+elekr+k+gk+la+vh++epr+++++ ++ e  
    CCD22967.1 209 KRTDDEYgGSIENRARFALEVVDAIVDAIGEDKVGIRLSPYGTFGTMSGGADPtllAQYAYVLGELEKRAKAGKRLAFVHLVEPRVTNPFMTEGEge 305
                   ***85544********************************************99**************************************99987 PP

                   TT.HHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCGG CS
  Oxidored_FMN 280 qe.kntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpln 342
                   ++ ++++f +++wk+ +i++g+ a +++ a  +  ++++L ++gR f+a+pdlve+l+kglpln
    CCD22967.1 306 YNdGTNDFAYSIWKGVIIRAGNLALHPEVARELVANDRTLLGYGRFFIANPDLVERLAKGLPLN 369
                   888999*********************9999999***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3090.14
//
Query:       CCD22968.1  [L=484]
Description: hypothetical protein NDAI_0A08140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-32  112.6  32.5    2.3e-32  112.6  32.5    2.2  2  SHE3      SWI5-dependent HO expression protein 3
  ------ inclusion threshold ------
      0.018   15.1   3.4      0.018   15.1   3.4    2.8  3  DUF1664   Protein of unknown function (DUF1664)
      0.029   13.7  19.6       0.52    9.6  12.0    2.8  3  DUF3450   Protein of unknown function (DUF3450)
        4.4    5.7  47.5      0.013   14.1  15.8    2.4  2  Macoilin  Macoilin family
        5.2    7.4  17.2       0.38   11.1   5.5    2.8  2  OmpH      Outer membrane protein (OmpH-like)


Domain annotation for each model (and alignments):
>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6  32.5   6.4e-36   2.3e-32       1     227 [.      97     329 ..      97     330 .. 0.87
   2 ?    0.6   5.7      0.11   3.9e+02     131     211 ..     324     402 ..     323     418 .. 0.72

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 6.4e-36
                 XXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        SHE3   1 StkVIesLHeqiDaLtktnlqLtqqsqeLleklelaqkkeskflenlaslkhENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlens 99 
                 S +VIe+L eq+D+Lt  nlqL  qs++Ll+kle+a++ e++++++++s++  N+nL++ ++  +  lk+ e++l+elk+s      ++k l+ ++++ 
  CCD22968.1  97 SDRVIETLREQVDTLTASNLQLSLQSENLLKKLENANEFENSLINDINSMRLNNENLNAQFENVNAGLKEKESKLNELKNSLRTELDNEKVLNRKIDSF 195
                 78************************************************************************************************* PP

                 CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSXXXXXXXXXXX.XXXXXXXXXXXXXXXXX....XXXXXXXXXXXX CS
        SHE3 100 saseteleeelerlkvqYdalvdsqkeYkehYqqeieeLkesleklklenekqleelqerissndkdidtkldsynnkkknle....sieeeknkkllk 194
                 ++++ +l++ l+r++ qY++l++sq+ YkehY+ e+ +L++ l++lk +   ++ +l+++ + +  + d + +s ++  k++e    +ie++ + +l++
  CCD22968.1 196 EEKQRKLMNTLKRVRCQYESLMESQSFYKEHYSMELLNLQNVLQDLKINDI-EIVDLIDSCNIDGDTADGRSNSNEEMIKKIEadliDIEKSDTDYLES 293
                 ***********************************************9877.66677777666665665555555554444331111455555555544 PP

                 ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SHE3 195 ...kleslaseldleswlelykelkelileyaekie 227
                    + ++++s++dl++w +ly+e+k   l+y+e ++
  CCD22968.1 294 fkiQTKEILSDIDLPHWSNLYQESKIRLLQYKEEMK 329
                 221788999************************996 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHHSSSXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SHE3 131 YqqeieeLkesleklklenekqleelqerissndkdidtkldsynnkkknlesieeeknkkllkkleslaseldleswlel 211
                 Y++e++++++ le+   + +   ++ ++++ +++k+  ++ +s+++     +++++++++ + ++ e  +s+l++ ++ + 
  CCD22968.1 324 YKEEMKKMETTLESRLGDTT--TTTTTTTTKDDEKKTAARNESLKKLESGQDDSKTSHDTTIPQENEDTTSQLKMRKLRKN 402
                 88888888888887666666..44555555566666666666666666666778899999999**********99998765 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   3.4   4.9e-06     0.018      41     121 ..      95     175 ..      90     177 .. 0.93
   2 ?    5.8   2.9    0.0038        14      36     122 ..     199     285 ..     186     287 .. 0.93
   3 ?   -2.6   0.2       1.5   5.2e+03      54      69 ..     325     340 ..     314     372 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.9e-06
     DUF1664  41 davesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerie 121
                 d  ++v + l +  ++l+a   +Ls + +++ kkl++ +e  +++ ++++++r + ++++ ++e+v++  ++ eskl++++
  CCD22968.1  95 DESDRVIETLREQVDTLTASNLQLSLQSENLLKKLENANEFENSLINDINSMRLNNENLNAQFENVNAGLKEKESKLNELK 175
                 5567788899999999**************************************************************996 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0038
     DUF1664  36 krslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskleriee 122
                 +r l + +++v  q e+++es +  k+h s ++ ++++ l++ k    ei + +++ + d ++ +  ++s +e+++++e+ l +ie+
  CCD22968.1 199 QRKLMNTLKRVRCQYESLMESQSFYKEHYSMELLNLQNVLQDLKINDIEIVDLIDSCNIDGDTADGRSNSNEEMIKKIEADLIDIEK 285
                 588999999999********************************9999********99999999999************99999986 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.5
     DUF1664  54 seslaatkrhLssrid 69 
                 +e++++    L+sr+ 
  CCD22968.1 325 KEEMKKMETTLESRLG 340
                 3344444444444433 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4     0.017        61      51      85 ..      99     133 ..      87     139 .. 0.81
   2 ?    9.6  12.0   0.00014      0.52      15     142 ..     119     245 ..     108     252 .. 0.90
   3 ?    7.9   0.4   0.00047       1.7      82     141 ..     319     378 ..     307     383 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.017
     DUF3450  51 aeyralkeeleslevyneqlerlvasqeqeiasle 85 
                 + +++l+e+++ l++ n ql+ + +++ +++++ +
  CCD22968.1  99 RVIETLREQVDTLTASNLQLSLQSENLLKKLENAN 133
                 56889999999999999999999999988888765 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00014
     DUF3450  15 aatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqieeieeierelvpllekmidrLeqfv 113
                 + + +++lk+ e+a++ + +  + i+++  + ++l a+++++++ l++ e + ++l++++++   + + l+++i+++ee +r+l   l+++  ++e ++
  CCD22968.1 119 SLQSENLLKKLENANEFENSLINDINSMRLNNENLNAQFENVNAGLKEKESKLNELKNSLRTELDNEKVLNRKIDSFEEKQRKLMNTLKRVRCQYESLM 217
                 67889999******************************************************************************************* PP

     DUF3450 114 eldlPflleeRqarlakLkelmdradvsl 142
                 e+   f +e    +l +L++++++ ++++
  CCD22968.1 218 ESQ-SFYKEHYSMELLNLQNVLQDLKIND 245
                 987.5999999999999999999988876 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.00047
     DUF3450  82 asleeqieeieeierelvpllekmidrLeqfveldlPflleeRqarlakLkelmdradvs 141
                  +l + +ee++++e+ l+  l ++ ++  +  ++d   +   R++ l+kL++  d+++ s
  CCD22968.1 319 IRLLQYKEEMKKMETTLESRLGDTTTTTTTTTTKDDEKKTAARNESLKKLESGQDDSKTS 378
                 4688899*********************************************99999877 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1  15.8   3.6e-06     0.013     309     543 ..      11     245 ..       2     255 .. 0.62
   2 ?   -2.7  23.1      0.43   1.5e+03     251     395 ..     337     476 ..     279     482 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.6e-06
    Macoilin 309 ellveesvkskssssssssnknskkasagsagssnssskkhsessksvtsssssknskkqklpaGkssaalkdaaenslpnnqlskkda....lvrLea 403
                 +++ +++++ ++  s s+ ++++    + + + s ss  ++  ++ s++ ss s  s     ++ +s ++++ ++  +  nn +  kd+    ++ L +
  CCD22968.1  11 TTTNNNNNNTEKLGSPSKLAPHHGLFMT-NLEYSPSSRSTLLGHNTSPSASSFSPPSSSATFGVNRSISMNNINI--NNKNNPMMVKDEsdrvIETLRE 106
                 2222222222333333333344433333.4555666666666777777777777776666666555555444444..4456666555552222347888 PP

    Macoilin 404 dikkLka.eLqasrqteqelrskissltseerslkselqqlkkendllqtklhelvsakqkdkqtlqqlekrLkeekearaslekqLae.ekkrkkeee 500
                 ++  L a +Lq s q e+ l+ k++   + e sl +++++++ +n+ l ++++++    ++   +l++l   L++e ++ + l++++ + e k++k   
  CCD22968.1 107 QVDTLTAsNLQLSLQSENLLK-KLENANEFENSLINDINSMRLNNENLNAQFENVNAGLKEKESKLNELKNSLRTELDNEKVLNRKIDSfEEKQRKLM- 203
                 899998637999999998776.67777777************************99888888889**************9999999975344444444. PP

    Macoilin 501 etaaravalaaasrsecteslkskkrele.aeikkLekelklke 543
                 +t +r + +   s +e+    k++   +e  +++++ ++lk+++
  CCD22968.1 204 NTLKRVRCQ-YESLMESQSFYKEHY-SMElLNLQNVLQDLKIND 245
                 577774433.344455544444433.333134555555666655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.43
    Macoilin 251 peleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlsksessgsesellveesvkskssssssssnknskkasagsagssnssskkh 349
                 + l    ++++++ +++d+kk  ++ne   +kl++ +  +++s+ + +  +e+++++s+l++++  k++++ss+sss ++ k++s      + ss+   
  CCD22968.1 337 SRLGDTTTTTTTTTTKDDEKKTAARNE-SLKKLESGQDDSKTSHDTTI-PQENEDTTSQLKMRKLRKNSANSSNSSSVNSRKRNS----FYGASSPILT 429
                 222222222233333333333333222.22233333322222333333.333455555555555554444444443322222222....2455555554 PP

    Macoilin 350 sessks.vtsssssknskkqklpaGkssaalkdaaenslpnnqlskk 395
                  ++s+s ++sssss++s    lp+   + +l+++  ++ +nn+ s++
  CCD22968.1 430 PNASSSrIPSSSSSSSSLSPALPGVMRKPSLRKPSPHTNSNNSNSNH 476
                 44444414555566666666666444444666666666666655554 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.5   0.00011      0.38       9      81 ..     138     214 ..     135     241 .. 0.71
   2 ?    2.8   2.1     0.038   1.4e+02      15      58 ..     326     384 ..     307     423 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                 HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..-HHHHHHHHHHHHHHHHHHHHHH...H CS
        OmpH   9 kileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkle.keekeqelqkkeqelqqkqqqka...q 81 
                 +++++ + ++  +e+l+++f++ +a l++ke +l++l++ l ++  +++  ++k   +++k+++l++ +++ +   +
  CCD22968.1 138 SLINDINSMRLNNENLNAQFENVNAGLKEKESKLNELKNSLRTELDNEKvLNRKIDSFEEKQRKLMNTLKRVRcqyE 214
                 5778888888899****************************755444313334444466666666665555554333 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHHHH............HHHHHHHHHHHHHHHHHHHHHHHHTTTS....- CS
        OmpH  15 pegkaaqeqlekkf............kklqaeleakekelqklqeelqkkakkle...k 58 
                 +e+k++++ le+              k+ +++ +a++++l+kl+   ++++ + +    
  CCD22968.1 326 EEMKKMETTLESRLgdttttttttttKDDEKKTAARNESLKKLESGQDDSKTSHDttiP 384
                 33333333333333444443333333333333444444444333333322222213431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2700  (0.150594); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.41
# Mc/sec: 3509.57
//
Query:       CCD22969.1  [L=324]
Description: hypothetical protein NDAI_0A08150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-08   34.8   8.9    4.5e-07   30.3   0.6    2.9  3  PH               PH domain
  ------ inclusion threshold ------
       0.04   14.0   0.3      0.094   12.7   0.3    1.6  1  rRNA_processing  rRNA processing
      0.072   12.9   0.1       0.19   11.6   0.0    1.7  2  DUF4720          Domain of unknown function (DUF4720)
       0.87   10.0  14.4        0.5   10.8   1.8    3.1  2  PH_11            Pleckstrin homology domain
        7.6    7.3   7.9       0.66   10.7   3.0    1.7  2  IMUP             Immortalisation up-regulated protein


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.4   0.00055         2      20      41 ..      45      73 ..      19     109 .. 0.67
   2 ?   -1.0   0.1       0.7   2.5e+03      40      69 ..     135     173 ..      97     193 .. 0.62
   3 !   30.3   0.6   1.3e-10   4.5e-07      16     103 ..     219     314 ..     204     316 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00055
                EEEEEEETTEEEEESST.......TCTTE CS
          PH 20 krwfvLkdsellyyknd.......ksekd 41
                ++w+vL++++++yyk          ++++
  CCD22969.1 45 EYWCVLRRNQFSYYKGAdereavfVIPRN 73
                59*************99444444444444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.7
                 TESSEEEEEESTTEEEEEEEC........TT.SSSSTSE CS
          PH  40 kdkepkgsislsncevvevva........te.dpkrkfc 69 
                 +  e   sis s+ ++ ++v+        +e d +rk+c
  CCD22969.1 135 TGQENLASISSSSSSSDDTVDthidgeerEEiDQQRKCC 173
                 445556666666666666666666555553335555555 PP

  == domain 3  score: 30.3 bits;  conditional E-value: 1.3e-10
                 C...........SEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC....TT.SSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHH CS
          PH  16 k...........swkkrwfvLkdsellyykndksekdkepkgsislsncevvevva....te.dpkrkfcfelriverngsrtyllqasseeerkeWik 98 
                             +wk+  + L++  l +y+ +    + ++k+ ++l+n+ ++ + +    +e +   + cf++++      +++ ++a++e e+ +Wi 
  CCD22969.1 219 RvqvapvrfhsnKWKRFKVELSNRYLKIYSVK----SGKLKKNVDLNNVIDSVELNnnnkDEtNYVLDTCFAVITI----NERIKFKANNEKEMIDWII 309
                 4555556666679*******************....**************99776675432223334566777777....38***************** PP

                 HHHHH CS
          PH  99 aiqsa 103
                 +++s 
  CCD22969.1 310 SLKSG 314
                 **986 PP

>> rRNA_processing  rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   2.6e-05     0.094      28     128 ..     112     215 ..      90     217 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.6e-05
  rRNA_processing  28 lrkeYfKllkkegleeeekvakeaekskneeeeskkskkeareeeeklkfkerkeivkerkeekreekleavqeklerikalekkkkerek... 118
                        ke+fK +   + + e+++ + +++++n  + s++s++ + +   +++ +er+ei ++rk   +++k+e ++   e+     k    r k   
       CCD22969.1 112 AWKEFFKDIVPSKVSMERQE-EWNTGQENLASISSSSSSSDDTVDTHIDGEEREEIDQQRKCCVKKSKEECEKVTPEDDTLFYKTFDPRLKehi 204
                      469******99999988774.4444444444445555555556667899************999999999998888877655555544444111 PP

  rRNA_processing 119 .rkkkLskkTk 128
                       +k  L+ kTk
       CCD22969.1 205 iQKGILNVKTK 215
                      14566666666 PP

>> DUF4720  Domain of unknown function (DUF4720)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.1   1.1e+04      31      42 ..     185     196 ..     168     200 .. 0.63
   2 ?   11.6   0.0   5.2e-05      0.19       8      76 ..     213     283 ..     208     297 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.1
     DUF4720  31 nPrnrdlffrtl 42 
                  P +  lf++t+
  CCD22969.1 185 TPEDDTLFYKTF 196
                 577778888875 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.2e-05
     DUF4720   8 alvllgqvkgaplr.keekWkslenP.rnrdlffrtlqayflrrGldlekfpaafsiknedprPllfasds 76 
                       +v+ ap+r + +kWk ++   +nr l   ++++  l++ +dl+++  + +++n+++  + +  d+
  CCD22969.1 213 KTKKAVRVQVAPVRfHSNKWKRFKVElSNRYLKIYSVKSGKLKKNVDLNNVIDSVELNNNNKDETNYVLDT 283
                 555567889999984579****997549********************************99988888776 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   5.1     0.026        92      15      40 ..      45      69 ..      26     195 .. 0.85
   2 ?   10.8   1.8   0.00014       0.5       9     104 ..     229     313 ..     206     314 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.026
       PH_11 15 rrwfavlkdgvLeyYk..sekkkvvkhv 40
                ++w+ vl+  +++yYk  +e + v  +v
  CCD22969.1 45 EYWC-VLRRNQFSYYKgaDEREAV--FV 69
                4566.***********55444333..44 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00014
       PH_11   9 gskaWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaalfkidsirs.sksddllleistetkifflkgdsneeteeWvealke 104
                 ++  Wkr   ++l ++ L+ Y  +  k           ++  l+ ++ s +l + ++++     d +++ i ++ +i  +k+++++e+ +W+ +lk+
  CCD22969.1 229 SN-KWKRFK-VELSNRYLKIYSVKSGKL---------KKNVDLNNVIDSVELNNNNKDETnYVLDTCFAVITINERI-KFKANNEKEMIDWIISLKS 313
                 33.487544.599999999999999999.........6677888888888888666666515567777777777777.7*************99985 PP

>> IMUP  Immortalisation up-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2         5   1.8e+04      81      90 ..      21      30 ..      17      37 .. 0.55
   2 ?   10.7   3.0   0.00018      0.66      55     101 ..     139     183 ..     121     189 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5
        IMUP 81 ksasdkvkkP 90
                   s+k kk 
  CCD22969.1 21 SHDSAKSKKS 30
                3333444443 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00018
        IMUP  55 dsssssssssdsdaeakphaagskkhksasdkvkkPkvkkekkkkek 101
                 + +s sssss sd  + +h  g ++ +   d+ +k  vkk k++ ek
  CCD22969.1 139 NLASISSSSSSSDDTVDTHIDGEEREE--IDQQRKCCVKKSKEECEK 183
                 223333344555556666777766554..467789999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1264  (0.0705003); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2627.35
//
Query:       CCD22970.1  [L=400]
Description: hypothetical protein NDAI_0A08160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-43  145.5   2.6    9.1e-28   96.1   1.0    2.5  2  TFIIB          Transcription factor TFIIB repeat
    5.1e-13   48.3   0.7    9.3e-13   47.5   0.7    1.5  1  TF_Zn_Ribbon   TFIIB zinc-binding
    0.00029   21.3   7.5    0.00045   20.7   2.5    2.9  3  Ribosomal_60s  60s Acidic ribosomal protein
  ------ inclusion threshold ------
       0.15   11.5   0.5        3.5    7.2   0.0    2.4  2  zf-ribbon_3    zinc-ribbon domain
       0.17   11.8   0.1       0.37   10.8   0.1    1.5  1  RecO_N         Recombination protein O N terminal


Domain annotation for each model (and alignments):
>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   1.0   2.5e-31   9.1e-28       1      70 [.     148     217 ..     148     218 .. 0.98
   2 !   48.4   0.0     2e-16     7e-13       1      71 []     254     324 ..     254     324 .. 0.99

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 2.5e-31
                 HHHHHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHH CS
       TFIIB   1 ikrfadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekt 70 
                 +++++da+eLp++V+d+Ake++kl+++ek lkG+s+++i+AA+++i+cr++ev+rt+kei+s+++V++k+
  CCD22970.1 148 MTMLCDAAELPKIVKDCAKEAYKLCHDEKSLKGKSSESIMAASILIGCRRAEVARTFKEIQSIIHVKTKE 217
                 689****************************************************************998 PP

  == domain 2  score: 48.4 bits;  conditional E-value: 2e-16
                 HHHHHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHHH CS
       TFIIB   1 ikrfadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekti 71 
                 i+rf+++l+Lp +V+ aA++ ak+++e + ++G+sp++ia  ++y+  ++++   + + + ++lqV+e ti
  CCD22970.1 254 IPRFCSHLGLPMQVTTAAEYTAKKCKEIEEIAGKSPITIAVVSIYLNILLFKIPVSAAKVGQILQVTEGTI 324
                 89******************************************************************998 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.7   2.6e-16   9.3e-13       2      43 .]      38      81 ..      37      81 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 2.6e-16
                  EETTTTC.EE.CHEETSTTCEEESSSSBEEEECCCCCCCHHHHH CS
  TF_Zn_Ribbon  2 kCPnCgs.tn.lveDpergelvCtdCGlVlednsidegpewref 43
                  +CP+C+  +  +ve +++g++vC  CGlVl d  +d ++ewr+f
    CCD22970.1 38 TCPECKVyPPkIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTF 81
                  8******8778********************************8 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.13   4.6e+02       4      41 ..     154     189 ..     152     201 .. 0.89
   2 ?   -0.9   0.0      0.72   2.6e+03      21      40 ..     267     286 ..     262     293 .. 0.79
   3 !   20.7   2.5   1.3e-07   0.00045      37      79 ..     342     392 ..     307     396 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.13
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s   4 aenikkvlkaagveveaarvkllvkalegkdieellan 41 
                    a++++k++k++ +  ea+++  + k+l+gk+ e+++a+
     CCD22970.1 154 AAELPKIVKDCAK--EAYKLCHDEKSLKGKSSESIMAA 189
                    789999*****99..99*************99998875 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.72
                    XXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  21 arvkllvkalegkdieella 40 
                    ++++++++a + k+iee+ +
     CCD22970.1 267 VTTAAEYTAKKCKEIEEIAG 286
                    56678888888888888865 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 1.3e-07
                    XXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX- CS
  Ribosomal_60s  37 ellangaakla.........aaaaaaaaaaaaaaaaaaaeekkkeeeeeEee 79 
                     l+ang+ ++          +a+aaaa+++aaaaa+aaa  kkke   +  e
     CCD22970.1 342 QLIANGTVSMDnlprldkdrGAKAAAASSSAAAAASAAASNKKKETAVK-KE 392
                    5899999998899999999988889999999999999999999988875.33 PP

>> zf-ribbon_3  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.044   1.6e+02       4       9 ..      38      43 ..      36      49 .. 0.76
   2 ?    7.2   0.0   0.00098       3.5      13      26 .]      54      67 ..      51      67 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.044
  zf-ribbon_3  4 rCPnCG 9 
                 +CP+C+
   CCD22970.1 38 TCPECK 43
                 588886 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00098
  zf-ribbon_3 13 ssddnvCpyCGtkl 26
                 s++d+vC+ CG +l
   CCD22970.1 54 SEGDVVCALCGLVL 67
                 79*********987 PP

>> RecO_N  Recombination protein O N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1    0.0001      0.37      14      46 ..     202     234 ..     200     237 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0001
                 EEETTSEEEEEEEETT.EEEEEEEET-..TTST CS
      RecO_N  14 rkygEsdlivtlfTrehGkvsalargarksksr 46 
                 r ++E   i+++ T+e+Gk  ++ +g+ + ks+
  CCD22970.1 202 RTFKEIQSIIHVKTKEFGKTLGIMKGILREKSS 234
                 779999*********************888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3152.68
//
Query:       CCD22971.1  [L=539]
Description: hypothetical protein NDAI_0A08170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-78  261.5   0.6    4.1e-78  261.5   0.6    2.2  2  SRP54       SRP54-type protein, GTPase domain
      5e-29  100.8  12.9      5e-29  100.8  12.9    4.1  3  SRP_SPB     Signal peptide binding domain
    3.2e-14   52.9   1.4    3.2e-14   52.9   1.4    2.2  2  SRP54_N     SRP54-type protein, helical bundle domain
    6.6e-05   22.4   3.3        1.6    8.1   0.1    3.8  3  SRPRB       Signal recognition particle receptor beta subunit
    7.2e-05   22.4   2.8    0.00035   20.2   1.2    2.7  2  cobW        CobW/HypB/UreG, nucleotide-binding domain
    9.5e-05   22.6   0.0    0.00025   21.2   0.0    1.7  1  AAA_33      AAA domain
    0.00019   21.5   0.0     0.0007   19.6   0.0    2.2  1  CbiA        CobQ/CobB/MinD/ParA nucleotide binding domain
    0.00027   21.4   0.1     0.0012   19.3   0.1    2.1  1  AAA_17      AAA domain
     0.0015   18.4   0.0     0.0051   16.7   0.0    2.0  1  MobB        Molybdopterin guanine dinucleotide synthesis prot
      0.002   17.4   0.1     0.0064   15.8   0.0    1.8  2  Zeta_toxin  Zeta toxin
     0.0046   16.0   1.2      0.019   14.0   0.0    2.6  3  MeaB        Methylmalonyl Co-A mutase-associated GTPase MeaB
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.024   14.6   0.0    1.5  1  APS_kinase  Adenylylsulphate kinase
      0.013   15.3   0.1      0.047   13.5   0.1    2.0  1  ATP_bind_1  Conserved hypothetical ATP binding protein
      0.015   15.8   0.1      0.052   14.1   0.0    2.0  1  AAA_18      AAA domain
      0.023   14.4   0.0      0.055   13.2   0.0    1.7  1  AAA_30      AAA domain
       0.03   14.3   2.5       0.04   13.8   0.0    2.3  2  AAA_31      AAA domain
      0.047   14.0   0.6       0.17   12.1   0.3    2.2  1  AAA_22      AAA domain
       0.05   13.3   0.0       0.14   11.9   0.0    1.7  1  VirE        Virulence-associated protein E
      0.053   12.8   0.0      0.096   12.0   0.0    1.4  1  VirC1       VirC1 protein
      0.054   12.8   0.1        1.2    8.3   0.1    2.5  1  MipZ        ATPase MipZ
      0.055   13.8   0.0       0.11   12.9   0.0    1.5  1  AAA_16      AAA ATPase domain
      0.078   13.4   1.1       0.99    9.8   0.9    2.8  1  AAA         ATPase family associated with various cellular ac
      0.082   12.6   2.1       0.12   12.1   0.1    2.2  3  AAA_24      AAA domain
      0.098   12.7   2.1        0.4   10.8   0.4    2.8  3  MMR_HSR1    50S ribosome-binding GTPase
       0.21   11.8   0.1       0.64   10.3   0.0    1.9  2  AAA_28      AAA domain
        1.6    8.6   5.3        2.2    8.2   2.7    2.5  1  NTPase_1    NTPase
        1.8    8.5   5.2       0.98    9.4   1.5    2.4  2  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.5   0.6   6.1e-81   4.1e-78       2     196 .]     109     303 ..     108     303 .. 0.99
   2 ?    0.6   0.3      0.55   3.6e+02      99     138 ..     364     403 ..     311     407 .. 0.78

  Alignments for each domain:
  == domain 1  score: 261.5 bits;  conditional E-value: 6.1e-81
                 EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE--SSTTHHH CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvikkkeeadpaavakeavekakeekidvvlvDTaGrlqndke 100
                 nvi++vGlqG+GKTt+++KLa +++k+g kv lv+aDtfRa+A++QLk++a k+++p++++++e+dp++v++e++ k+k+ek+++++vDT+Gr+++++e
  CCD22971.1 109 NVIMFVGLQGSGKTTSCTKLAVYYQKRGFKVGLVCADTFRAGAFDQLKQNAIKARIPFYGSYTETDPVKVVEEGITKFKKEKFEIIIVDTSGRHRQEEE 207
                 89************************************************************************************************* PP

                 HHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHSSCSEEEEESTTSSSSTTHHHHHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHHHHT CS
       SRP54 101 lmeelkkikkvvkpdevllvldattgqeavkqakaFkeavgitgviltklDgdakgGaalsiaaelklPikfigvGekiedleefdperlvsrllg 196
                 l++e+ +i++vvkp+++++vlda++gq+a +q kaFk++ +++++iltk+Dg+akgG+a+s++a++++Pi+fig+Ge+i+d+e+f+p+++vs+llg
  CCD22971.1 208 LFQEMIQISNVVKPNQTIMVLDASIGQAAEQQSKAFKDSSDFGAIILTKMDGHAKGGGAISAVAATHTPIIFIGTGEHIHDFEKFSPKSFVSKLLG 303
                 **********************************************************************************************95 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.55
                 HHHHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHH CS
       SRP54  99 kelmeelkkikkvvkpdevllvldattgqeavkqakaFke 138
                 +++m+++ + ++  k +++++v d++t++e  +  + F e
  CCD22971.1 364 SNMMSQVGEEETSQKMKKMVYVFDSMTKEELESDGRMFIE 403
                 4566666666666699999999999999998888877765 PP

>> SRP_SPB  Signal peptide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       4.5     3e+03      13      35 ..     300     322 ..     290     332 .. 0.60
   2 !  100.8  12.9   7.6e-32     5e-29       1      98 [.     334     435 ..     334     436 .. 0.93
   3 ?   -0.5   5.5         3     2e+03      14      49 ..     459     495 ..     449     499 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 4.5
                 HHHCCCCCCHHHHCCC.....H. CS
     SRP_SPB  13 qikkmGplskllsmiPgmsaeak 35 
                 ++  +G++++l++ +  +s++++
  CCD22971.1 300 KLLGIGDIESLFEQLQTVSNKED 322
                 55667777777777776554422 PP

  == domain 2  score: 100.8 bits;  conditional E-value: 7.6e-32
                 SSCTHHHHHHHHHHHCCCCCCHHHHCCC.......H...CCCCCHHHHHHHHHTTSBHHHHHSGCG-..H..HHHHHHHHHTTS-HHHHHHHHHHHHHH CS
     SRP_SPB   1 eftlrdlleqlqqikkmGplskllsmiPgmsae..akaeeeaekklkrieaiidSMTkeErdspekllke..sRkrRiArGsGtsvqevnellkqfeqm 95 
                 +ftl d+++q+q+++kmGp+s++++miPgms++  +  eee+++k+k++ +++dSMTkeE++s+++++ e  sR+ R+ArGsGtsv ev+ +l+q ++m
  CCD22971.1 334 KFTLLDFKKQMQTMMKMGPISNIAQMIPGMSNMmsQVGEEETSQKMKKMVYVFDSMTKEELESDGRMFIEqpSRMVRVARGSGTSVLEVEMILMQQRMM 432
                 69*****************************9966333477889*********************9997558*************************** PP

                 HHH CS
     SRP_SPB  96 kkm 98 
                 ++m
  CCD22971.1 433 ANM 435
                 *99 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 3
                 HHCCCCCCHHHHCCC......H....CCCCCHHHHHHH CS
     SRP_SPB  14 ikkmGplskllsmiPgmsae.akae.eeaekklkriea 49 
                 + +m ++  + +m P ++++ + ++ +++ + +k+++ 
  CCD22971.1 459 MPNMPNIPGMPKMTPQLMQQaQ-QKlSQNPNLMKNMMN 495
                 4445555555555555554432.222334455666655 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   1.4   4.7e-17   3.2e-14       1      75 []       6      89 ..       6      89 .. 0.91
   2 ?   -2.6   0.1       9.9   6.5e+03       5      30 ..     307     330 ..     305     332 .. 0.60

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 4.7e-17
                HHHHHHHHHHHHCCSSCGHHHH.HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTS........S-HHHHHHHHHHHHH CS
     SRP54_N  1 Lgkklnsalkklsgkskideed.leealkeleeaLleaDVgvkvvkklienvkkkavgekk........lkpkqqvkkivkdeL 75
                Lgk++n+a+++  ++++ d  + ++ +lk + +aLle+DV++ +v+k+++n+k k + e++         ++k+ ++k+v+deL
  CCD22971.1  6 LGKRINGAVNNALSNTEDDYTTtVDSMLKGIVTALLESDVNIALVSKVRSNIKSKLLSENNaanrsvsnGQTKKLIQKTVFDEL 89
                89**************9999888*****************************9988886669998865544************8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.9
                 HHHHHHHHCCSSCGHHHHHHHHHHHH CS
     SRP54_N   5 lnsalkklsgkskideedleealkel 30 
                 ++s++ +l++    ++ed +++++ +
  CCD22971.1 307 IESLFEQLQTV--SNKEDTQATMENI 330
                 67777777444..4666666666666 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0024       1.6       2      24 ..     107     129 ..     106     139 .. 0.86
   2 ?    4.8   0.1     0.025        17      43      89 ..     186     234 ..     152     257 .. 0.82
   3 !    7.7   0.1    0.0034       2.2      18      87 ..     309     390 ..     302     401 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0024
                 ---EEEEE-STTSSHHHHHHHHH CS
       SRPRB   2 skpavllvGlsdsGKTslftrLt 24 
                 +++ +++vGl+ sGKT+  t+L 
  CCD22971.1 107 KSNVIMFVGLQGSGKTTSCTKLA 129
                 67999************999997 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.025
                 G...GGTT-SEEEETT-GCCSHHHHHHHHHHGG.EE..EEEEEEETTS-H CS
       SRPRB  43 vksekgskltliDfPGheklrqklleklkakss.lk..glvfvvDStidp 89 
                 + +++++++ ++D  G ++   +l++++++ s+ +k  + + v+D++i +
  CCD22971.1 186 F-KKEKFEIIIVDTSGRHRQEEELFQEMIQISNvVKpnQTIMVLDASIGQ 234
                 3.4678889999**************999988855433789999999876 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0034
                 HHHHHHHHS.S---B---SS-EEETTG........GGTT-SE......EE.ETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS CS
       SRPRB  18 slftrLttd.svkktvtSqessaalkv.....ksekgskltl......iD.fPGheklrqklleklkaksslkglvfvvDSti 87 
                 slf++L t  ++++t++ +e+    k+     k++ ++++++      +  +PG  ++ +++ e+  +++++k++v+v DS  
  CCD22971.1 309 SLFEQLQTVsNKEDTQATMENIQKGKFtlldfKKQMQTMMKMgpisniAQmIPGMSNMMSQVGEE-ETSQKMKKMVYVFDSMT 390
                 6888887763566777777777666665544444444444332211112236***********99.89999*********975 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   1.2   5.3e-07   0.00035       2     153 ..     110     260 ..     109     275 .. 0.75
   2 ?   -1.7   0.0       2.8   1.8e+03     108     121 ..     375     388 ..     318     433 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.3e-07
                 EEEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHH..TT-SEEEEEECT.TTT CS
        cobW   2 vtvltGflGsGKTtLlnhll..enraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeere..erldviliEttG.lae 95 
                 v++++G  GsGKTt  ++l    +++g k+ ++  +    +   +l +++  ++     G    t   d +k++e+  ++   e++++i++ t+G   +
  CCD22971.1 110 VIMFVGLQGSGKTTSCTKLAvyYQKRGFKVGLVCADTFRAGAFDQLKQNA-IKARIPFYGSYTET---DPVKVVEEGITKFkkEKFEIIIVDTSGrHRQ 204
                 78899***********9999998999**********99766655554444.44444456877777...44444443332222246**********5555 PP

                 HHHHHTT.SHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHH CS
        cobW  96 Papvaft.eeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDll 153
                   ++ f+   ++++ ++ + +++v+Da  + ++ e++++ ++d   +   ++l+K+D  
  CCD22971.1 205 EEEL-FQeMIQISNVVKPNQTIMVLDA-SIGQAAEQQSKAFKDSSDFG-AIILTKMDGH 260
                 5555.66699*****************.55678888888888888775.6899999965 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.8
                 HCCCECEEEEEEET CS
        cobW 108 sdltldavvavvDa 121
                 ++ +++ +v+v D+
  CCD22971.1 375 TSQKMKKMVYVFDS 388
                 34455556666666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.8e-07   0.00025       1     111 [.     110     235 ..     110     251 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.8e-07
      AAA_33   1 lvllvGlpGsGKstlaerl...lkklg..avllssdtlrrrlfgtdqqskt........dytrvldrlyqilnelarkalsagrnvildatnlsrrer. 85 
                 ++++vGl+GsGK+t  ++l   ++k+g  + l+  dt+r   f + +q+           yt+  ++  + ++e ++k  ++++ +i+  t  ++r+  
  CCD22971.1 110 VIMFVGLQGSGKTTSCTKLavyYQKRGfkVGLVCADTFRAGAFDQLKQNAIkaripfygSYTE--TDPVKVVEEGITKFKKEKFEIIIVDTSGRHRQEe 206
                 89****************97778899988889********99985554332355554432222..3344588899999999999988877765554431 PP

      AAA_33  86 ...arflklarrlgvpvrivvvetdeetl 111
                    ++++++ +  + + +i+v++++  ++
  CCD22971.1 207 elfQEMIQISNVVKPNQTIMVLDASIGQA 235
                 22244444444333345666666665555 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.1e-06    0.0007       9      88 ..     118     261 ..     111     404 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.1e-06
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep..................................................... 54 
                 G+GKTt +++La++ ++rg++V lv aD+ +  ++  + ++n i+                                                      
  CCD22971.1 118 GSGKTTSCTKLAVYYQKRGFKVGLVCADTFRAGAF-DQLKQNAIKAripfygsytetdpvkvveegitkfkkekfeiiivdtsgrhrqeeelfqemiqi 215
                 89***********************9999877666.344444444478888888888888888888888888888888888888888888888888888 PP

                 .............CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS.. CS
                 .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .............dlkrllellealgkkkalllkiagvvlnrvdgen 88 
                              d+ ++++ +e+ +k +++  ++  ++l++ dg +
  CCD22971.1 216 snvvkpnqtimvlDA-SIGQAAEQQSKAFKDSSDFGAIILTKMDGHA 261
                 888888888888744.3344444444444444444444444444443 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.8e-06    0.0012       1     118 [.     114     238 ..     114     248 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.8e-06
                 EE-TTSSHHHHHHHHHHHH...TEEE.EEHHHHHHHHHHTTTSHSSHHHHC.....TSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEE CS
      AAA_17   1 lGgPGsGKgtqceklveky...gfth.lsaGdllreeakrgglakardemr.....klpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfld 90 
                 +G+ GsGK+t c kl+  y   gf++ l   d +r+ a ++ l+++  + r        + +  ++ +e + k ++e k + ++vd+  r ++++++++
  CCD22971.1 114 VGLQGSGKTTSCTKLAVYYqkrGFKVgLVCADTFRAGAFDQ-LKQNAIKARipfygSYTETDPVKVVEEGITKFKKE-KFEIIIVDTSGRHRQEEELFQ 210
                 79*************96553337777667778887776444.32232223334545566777778888888888887.6689********999999999 PP

                 SSHHHHHHHH...SEEEEEE--HHHHHHH CS
      AAA_17  91 glpkevleelkp.daiilleadpeeiler 118
                 ++ + + + +kp ++i +l+a+  +  e+
  CCD22971.1 211 EMIQ-ISNVVKPnQTIMVLDASIGQAAEQ 238
                 9985.899999977788899987666665 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.7e-06    0.0051       1      33 [.     110     142 ..     110     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.7e-06
        MobB   1 vlgivgksgsGKTtLleklipelkarglrvgti 33 
                 v+ +vg +gsGKTt  +kl    ++rg++vg++
  CCD22971.1 110 VIMFVGLQGSGKTTSCTKLAVYYQKRGFKVGLV 142
                 689****************************98 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.7e-06    0.0064      10     109 ..     102     205 ..      94     216 .. 0.76
   2 ?   -2.9   0.0       5.2   3.5e+03      56      92 ..     358     395 ..     355     402 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 9.7e-06
  Zeta_toxin  10 ypsqerPklillgGqpGAGKselaellkdelerqgnvv.rldpDdlRelhPeyeeilk....adpkkaseltqkdaselvekllqeaiengynii.veg 102
                 +p++++  +i+ +G +G+GK++  ++l+ + +++g  v  + +D++R+    ++++ +    a+   + ++t+ d  ++ve+ +++  +++++ii v++
  CCD22971.1 102 TPKKKKSNVIMFVGLQGSGKTTSCTKLAVYYQKRGFKVgLVCADTFRAGA--FDQLKQnaikARIPFYGSYTETDPVKVVEEGITKFKKEKFEIIiVDT 198
                 566688899999********************66655516789****966..55544433336888899***********************9862566 PP

  Zeta_toxin 103 tlrspdv 109
                   r+ ++
  CCD22971.1 199 SGRHRQE 205
                 6555555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.2
  Zeta_toxin  56 elhPeyeeilka.dpkkaseltqkdaselvekllqeai 92 
                 +++P  ++++ +  ++++s+ ++k ++++  ++ +e+ 
  CCD22971.1 358 QMIPGMSNMMSQvGEEETSQKMKKMVYVFDSMTKEELE 395
                 57788888887767778888888877777777766655 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.8e-05     0.019      23      66 ..     102     145 ..      65     152 .. 0.92
   2 ?   -1.1   0.1       1.2   7.6e+02     218     257 ..     353     393 ..     314     398 .. 0.74
   3 ?   -3.0   0.1       4.3   2.9e+03      11      42 ..     482     511 ..     474     527 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
                 GGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE- CS
        MeaB  23 lakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlavD 66 
                 ++k  +++v+ + G+ G+Gk t   +l++ +++rG +v+++  D
  CCD22971.1 102 TPKKKKSNVIMFVGLQGSGKTTSCTKLAVYYQKRGFKVGLVCAD 145
                 56777899*******************************99887 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH.HHHHH CS
        MeaB 218 idelvdaieehrevlkktGllekrrrerakeelre.lvede 257
                 i ++++ i    +++++ G+ e  ++ +++ +++  ++++e
  CCD22971.1 353 ISNIAQMIPGMSNMMSQVGEEETSQKMKKMVYVFDsMTKEE 393
                 78888888888999999999888888777776654145555 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.3
                 -SHHHHHHHHHHGGG-S-SEEEEEEE-TTSSH CS
        MeaB  11 erpeakellerllakaGraqvvGltGvPGaGk 42 
                 + ++  +l++++++  G a   G+ G+ GaG 
  CCD22971.1 482 KLSQNPNLMKNMMNMFGGAG--GMPGMGGAGG 511
                 55566677888887777664..5555555554 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.6e-05     0.024       2      50 ..     108     156 ..     107     163 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.6e-05
                 -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT-- CS
  APS_kinase   2 gvvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLg 50 
                 + v+++ Gl gsGK+t  ++l+ + +++g +v l+  d+ R g   +L 
  CCD22971.1 108 SNVIMFVGLQGSGKTTSCTKLAVYYQKRGFKVGLVCADTFRAGAFDQLK 156
                 679**************************************99877775 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   7.1e-05     0.047       2      33 ..     114     145 ..     113     149 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.1e-05
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsvavvNLD 33 
                 vG  GsGKtt + +l+ ++++rg +v +v  D
  CCD22971.1 114 VGLQGSGKTTSCTKLAVYYQKRGFKVGLVCAD 145
                 89**********************99998655 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   7.8e-05     0.052       1      65 [.     111     192 ..     111     231 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.8e-05
      AAA_18   1 IlltGtpGvGKttlakeL....skrlgf..............gvnlrdvakenglllevdpealdeskrldedkldklldale 65 
                 I+  G +G+GKtt +  L    +kr gf               ++l+++a + ++ ++    ++d+ k+++e+ ++   +++e
  CCD22971.1 111 IMFVGLQGSGKTTSCTKLavyyQKR-GFkvglvcadtfragaFDQLKQNAIKARIPFYGSYTETDPVKVVEEGITKFKKEKFE 192
                 8999**************9998888.455677777777777777777777777777777777777777777777665555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   8.2e-05     0.055      18      58 ..     108     149 ..     104     214 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.2e-05
      AAA_30  18 drvavltGpAGtGKttalkalreaweaaggrvi.glAptgka 58 
                   v + +G  G+GKtt+ ++l+  ++++g++v  ++A t +a
  CCD22971.1 108 SNVIMFVGLQGSGKTTSCTKLAVYYQKRGFKVGlVCADTFRA 149
                 458899***********************9996366776665 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   6.1e-05      0.04      12      58 ..     118     163 ..     108     214 .. 0.69
   2 ?   -2.1   0.3       4.9   3.2e+03      65      92 ..     340     368 ..     313     393 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.1e-05
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQanattglgiekneiekt 58 
                 G GKTT++++la+   k+g kv lv +D+  + ++  ++++n i+ +
  CCD22971.1 118 GSGKTTSCTKLAVYYQKRGFKVGLVCADTFRAGAF-DQLKQNAIKAR 163
                 79***********************9998776666.33455555544 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.9
      AAA_31  65 eeknikeaiiktkvenl.dlipssidLae 92 
                  +k+++ +++   ++n+ ++ip+  ++++
  CCD22971.1 340 FKKQMQTMMKMGPISNIaQMIPGMSNMMS 368
                 24445555554555665566666666554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   0.00026      0.17       4      33 ..     107     136 ..     104     231 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00026
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeea 33 
                 + ++++ +G  G+GKTt++ +l+  ++++ 
  CCD22971.1 107 KSNVIMFVGLQGSGKTTSCTKLAVYYQKRG 136
                 668899***************998776543 PP

>> VirE  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00021      0.14      42      76 ..      98     132 ..      69     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
        VirE  42 arvlePgiKfDfvlvLvGkqgsgKstfleklgeew 76 
                    + P+ K   v++ vG qgsgK+t+ +kl+ ++
  CCD22971.1  98 KEPFTPKKKKSNVIMFVGLQGSGKTTSCTKLAVYY 132
                 556799************************98765 PP

>> VirC1  VirC1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00014     0.096       4     109 ..     111     219 ..     108     234 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00014
       VirC1   4 itfcslkGGaGkttalmglcsalasdgkrvalfeadenrP..ltkwkenalrkgawddacevfvadelplleaayeeaegeGfdyaladtrgG...sse 97 
                 i f+ l+ G+Gktt+   l      +g +v+l  ad  r   + + k+na +            +d + ++e+   +++ e f++ ++dt g      e
  CCD22971.1 111 IMFVGLQ-GSGKTTSCTKLAVYYQKRGFKVGLVCADTFRAgaFDQLKQNAIKARI-PFYGSYTETDPVKVVEEGITKFKKEKFEIIIVDTSGRhrqEEE 207
                 5666665.68**************************9985337899999987654.4556677899************************764111567 PP

       VirC1  98 lnntiiassdll 109
                 l + +i  s+++
  CCD22971.1 208 LFQEMIQISNVV 219
                 777777777765 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0018       1.2      11     113 ..     118     204 ..     110     262 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0018
                 TSSHHHHHHHHHHHHHTTT--EEEEE--T.TT-HHHHHHHHHHHHHHHHT------EEE-SSS-HHHHTTS-HHHHHHHHHHHHHHHHHH-SEEEEE-- CS
        MipZ  11 GsGksttavhvavaLlkkGarvaaidldl.rqrtlarylenraataerkglsLplpealalseaeeaeveeeeeaevaeleelvadleaeldfividtP 108
                 GsGk+t +  +av   k+G++v+ +  d+ r  ++ +         +++ ++  +p + + +e++  +v ee  ++           ++++++i++dt 
  CCD22971.1 118 GSGKTTSCTKLAVYYQKRGFKVGLVCADTfRAGAFDQ--------LKQNAIKARIPFYGSYTETDPVKVVEEGITK---------FKKEKFEIIIVDTS 199
                 99*********************99988723333333........3333334444444333343444443322222.........23345566666666 PP

                 SS--H CS
        MipZ 109 Gsdsa 113
                 G++ +
  CCD22971.1 200 GRHRQ 204
                 66655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00016      0.11      23      66 ..     107     158 ..      87     242 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00016
      AAA_16  23 rpelvllsGesGvGKsslvrellralekdggif........lrgkcdqlesa 66 
                  +++++++G +G+GK++  ++l+ +++k+g+ +         +g +dql+++
  CCD22971.1 107 KSNVIMFVGLQGSGKTTSCTKLAVYYQKRGFKVglvcadtfRAGAFDQLKQN 158
                 44899******************99999944441111222233333333222 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.9    0.0015      0.99       1     112 [.     111     276 ..     111     294 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0015
                 EEEESSTTSSHHHHHHHHHHHHTHE....................EEEEETTTCSSS.......................................... CS
         AAA   1 vllyGppGtGKTllakavakelgve....................fleisgsellsk.......................................... 37 
                 ++++G  G GKT+ +  +a   + +                               +                                          
  CCD22971.1 111 IMFVGLQGSGKTTSCTKLAVYYQKRgfkvglvcadtfragafdqlK----------Qnaikaripfygsytetdpvkvveegitkfkkekfeiiivdts 199
                 5899***************997533333334444433344433330..........1444444555555545555555555666666677777766555 PP

                 .STTHHHHHHHHHHHHHHHTS.TSEEEEEET.GGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSG CS
         AAA  38 .yvgesekkirelfkeakeka.kpsilfiDE.idalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrp 112
                     + e+ ++e+++     + +++i+++D  i + a+++ +++ +++++  + +lt++dg  k  + +  ++at++p
  CCD22971.1 200 gRHRQEEELFQEMIQISNVVKpNQTIMVLDAsIGQAAEQQ-SKAFKDSSDFGAIILTKMDGHAKGGGAISAVAATHTP 276
                 5445555555555555444445558888885255555554.7777888889999999999999985555555555443 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.6   3.7e+03     111     136 ..      33      58 ..      23      93 .. 0.61
   2 ?   12.1   0.1   0.00017      0.12       2      91 ..     108     218 ..     107     255 .. 0.73
   3 ?   -1.8   0.0       3.2   2.2e+03      48      75 ..     362     390 ..     323     406 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.6
      AAA_24 111 frrllkklqelrknvifiahektrkd 136
                 ++ ++++l e + n+ ++++ + +  
  CCD22971.1  33 LKGIVTALLESDVNIALVSKVRSNIK 58 
                 45677888888888888887765543 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00017
      AAA_24   2 klkiliyGpsgiGKTtlakel.........gpkplfidtekGlksldadkfpdieswedfldevvel...........aaeladyktlviDtidel..e 78 
                 ++ i+ +G +g+GKTt++++l         +   ++ dt++ + + d  k + i++ + f+  ++e            + ++++++++++Dt +    e
  CCD22971.1 108 SNVIMFVGLQGSGKTTSCTKLavyyqkrgfKVGLVCADTFR-AGAFDQLKQNAIKARIPFYGSYTETdpvkvveegitKFKKEKFEIIIVDTSGRHrqE 205
                 5679999**************99999888888888889999.556777777777766667766666677788888899999***********8653114 PP

      AAA_24  79 elclaevirqnek 91 
                 e  ++e+i+ +++
  CCD22971.1 206 EELFQEMIQISNV 218
                 4455555555555 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.2
      AAA_24  48 swedfldevvelaaeladyk.tlviDtid 75 
                 ++ +++++v e ++ ++  k ++v+D+ +
  CCD22971.1 362 GMSNMMSQVGEEETSQKMKKmVYVFDSMT 390
                 44444444444433333322144555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.2   2.8e+03      23      52 ..      67      94 ..      39     102 .. 0.73
   2 ?   10.8   0.4    0.0006       0.4       2      93 ..     111     239 ..     110     256 .. 0.64
   3 ?   -1.5   0.0       3.8   2.5e+03      65      85 ..     369     388 ..     309     410 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.2
                TEEESSSTTSSSSEEEEEEEETTEEEEEEE CS
    MMR_HSR1 23 kaivsdkpgtTrdinegrvklkgkeielvD 52
                +a  s  +g T++ ++++v   ++ ++lvD
  CCD22971.1 67 AANRSVSNGQTKKLIQKTVF--DELCNLVD 94
                45666677888888888776..55677777 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0006
                 EEEEESTTSSHHHHHHHHH..........................TSTEEESSSTTSSSSEEEEEEE..........ETTEEEEEEECGGCSSHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt..........................gekaivsdkpgtTrdinegrvk..........lkgkeielvDtpGliegaseek 64 
                 +++vG   +GK+t   +l                           +++ai +++p+    +++  vk          +++ ei++vDt G  ++++ee 
  CCD22971.1 111 IMFVGLQGSGKTTSCTKLAvyyqkrgfkvglvcadtfragafdqlKQNAIKARIPFYGSYTETDPVKvveegitkfkKEKFEIIIVDTSG-RHRQEEEL 208
                 7899999999999999998777776666666665555554444433577777777776666666666555555554333467********.65444444 PP

                 .HHHHHHHHHHCTSEEEEEEETT..TTCSHHH CS
    MMR_HSR1  65 .glgkaflaleeadlillvvdas..eeklkpl 93 
                  ++  ++ ++ + +  ++v+das  ++  +++
  CCD22971.1 209 fQEMIQISNVVKPNQTIMVLDASigQA-AEQQ 239
                 677777777777899******885422.2222 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.8
                 HHHHHHHHHHCTSEEEEEEET CS
    MMR_HSR1  65 glgkaflaleeadlillvvda 85 
                 ++g++    ++++ +++v+d+
  CCD22971.1 369 QVGEEET-SQKMKKMVYVFDS 388
                 2333333.2345667777773 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00096      0.64       2      42 ..     111     158 ..     110     199 .. 0.81
   2 ?   -2.0   0.0       5.5   3.6e+03      17      67 ..     392     439 ..     388     448 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00096
      AAA_28   2 ivitGgestGKTtlleaLa....argyp..vv.pEaareileeklakg 42 
                 i+++G +++GKTt + +La    +rg++   v ++++r   +++l+++
  CCD22971.1 111 IMFVGLQGSGKTTSCTKLAvyyqKRGFKvgLVcADTFRAGAFDQLKQN 158
                 8899***************88765677744334777777777777665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.5
      AAA_28  17 eaLaargypvvpEaareileeklakgedalpwvedllafaervleeqleee 67 
                 e+L+++g   ++ + r++   +  +g+  l+   +++ +++r++++ +++ 
  CCD22971.1 392 EELESDGRMFIEQPSRMVRVAR-GSGTSVLEV--EMILMQQRMMANMAQNI 439
                 5667777777777776665444.445556775..79999999998887766 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.7    0.0033       2.2       3      39 ..     112     148 ..     110     255 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0033
                 EEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE- CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellkssgvkvgGfyteevr 39 
                 +  G +G+GKtT + k++   +++g+kvg + +   r
  CCD22971.1 112 MFVGLQGSGKTTSCTKLAVYYQKRGFKVGLVCADTFR 148
                 566999*********************9766555555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.5    0.0015      0.98      21      71 ..      95     156 ..      66     253 .. 0.57
   2 ?   -1.8   0.1       4.1   2.7e+03     100     112 ..     319     331 ..     285     388 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0015
                 ............TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSH...HHHHHHH CS
      ResIII  21 s..........krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprk...slleqtl 71 
                            k+ + ++++   G+GKT  ++kl+ +++k g   k+ +++  +      +q++
  CCD22971.1  95 CevkepftpkkKKSNVIMFVGLQGSGKTTSCTKLAVYYQKRGF--KVGLVCADTfraGAFDQLK 156
                 2555566665355556779*****************9999755..5555444332332333333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.1
                 ....-SEEEEEHH CS
      ResIII 100 dstnkkilvttiq 112
                 ++++++ ++++iq
  CCD22971.1 319 NKEDTQATMENIQ 331
                 2222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1479  (0.0824921); expected 358.6 (0.02)
Passed bias filter:                      745  (0.0415528); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 3607.22
//
Query:       CCD22972.1  [L=715]
Description: hypothetical protein NDAI_0A08180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.3e-159  529.7  25.8   1.1e-158  529.6  25.8    1.0  1  DUF1712   Fungal domain of unknown function (DUF1712)
  ------ inclusion threshold ------
      0.014   15.5   0.2       0.05   13.7   0.2    2.0  1  DUF5595   Domain of unknown function (DUF5595)
        0.1   12.4   0.0       0.24   11.2   0.0    1.5  1  DUF126    Aconitase X swivel domain


Domain annotation for each model (and alignments):
>> DUF1712  Fungal domain of unknown function (DUF1712)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  529.6  25.8  1.8e-162  1.1e-158       1     607 [.       5     712 ..       5     714 .. 0.90

  Alignments for each domain:
  == domain 1  score: 529.6 bits;  conditional E-value: 1.8e-162
     DUF1712   1 ivvFnpskgqkEgdelkklLlyhpf....teeeislneklskiGlieaiitFtetF...snedtcevietek.etiifyevEpdfwlvLvvenpkeqkn 91 
                 i++F+p+++++E+d++k+lLly++f     +e i+ nekls+iG+i+a++++t++F   sn++ +++ie+e+ ++i++++vE +f+++L +e   ++  
  CCD22972.1   5 ITIFDPTRSTNENDTFKELLLYYQFgnakGNEGITDNEKLSQIGIIQAVWSLTQSFggsSNDEVEKIIELENnDSILVIKVEGKFFICLCIEGSRDN-- 101
                 79************************9877889***********************77667778888***8626999***************54432.. PP

     DUF1712  92 keikeqi........ysavLkqcYqfFklfnGsfsslae..........erekLtdllneflvkfwqdlkllpetdllkslgtvlwhdfykvaelqs.. 170
                  +  +          y ++L+ cY++F +++ +f+++ +          +++kL++llne++v fw++++l+pet+  + +++  w++ +k ae+ s  
  CCD22972.1 102 TDDTNRRrniipnqfYLGYLWLCYKIFVMQYDEFANFHDndnanenngnTIRKLCGLLNEHFVIFWNNIYLKPETIWKRGFESL-WPKHFKNAEFISts 199
                 222222223456666**********************99******************************************777.**********9999 PP

     DUF1712 171 .........edksWeaiikqnllLdkenyLgikDvlvYhlPknekk........tkeYglirnfeseleslkelSnwLyhdhlvygtlsshdLagnvhl 252
                             +We++i qn+lL+k+ yLgikD+lvYhlP+++++         k+Ygli nf++e+e l+++SnwLy +h+vy +lssh+Lagn+h+
  CCD22972.1 200 tqnesststSAPNWESMITQNILLEKNGYLGIKDILVYHLPSQNSTsknqlklgNKTYGLISNFTTEFEMLPDFSNWLYYLHSVYDELSSHVLAGNAHY 298
                 **9*999988899*******************************9999*************************************************** PP

     DUF1712 253 k...............eqeedeeletds............strvlynvtlpilfaydaisevgsltginnslslvmnytpkgnvrssssensnskakld 324
                 k               +++ed++++t              s +  +n+tlpi+fa d+++e+gs++gi+ns+s+ ++y+p+++ +s+++ ++  +++ +
  CCD22972.1 299 KelppiegihsqhrgvDNDEDNNNNTAPnpssnltnissfSNKLFHNLTLPISFALDTVQEIGSTIGISNSVSMYKDYIPSWSSNSNNNISTTTNDENE 397
                 **********99999977777777776678999************************************************888888887777777766 PP

     DUF1712 325 rqeedrfgfliSplakvllpesyklkklqlkfntdekkeylnllfykakdvltvllldpafekiweqdylkeLdaklleqlsllaesieeelskeknse 423
                   +++r+gfliSpl ++ lp  yk  +l+lk  ++e  + +n+lf++++d+l+v+++d +fekiw+++ylk+L++kll++++ + ++   + + +++s 
  CCD22972.1 398 IAKNSRYGFLISPLCSDKLPLNYKRLQLKLKY-SNEIAKLYNCLFWYMNDILIVIICDTSFEKIWDHEYLKDLSFKLLQSMENFHNEYILNATSSSSSL 495
                 6666******************9877777777.67777777**********************************************999999999999 PP

     DUF1712 424 kkkksesfaYlifdkktkkirssiprkktslkkseelsr..ntLklvvnGidqllq........atssvasntn...............lgsnskevta 497
                  ++ +esfaY+++ kk+++i+ssipr + s+   +++ +  ++L lv++ idq+++        a +++ s ++                ++n + +t 
  CCD22972.1 496 SSSAVESFAYTVVQKKSLNIKSSIPRCSGSRMMMDSMREndSPLMLVIQEIDQIFNttnpdsrgASNNSSSGNKwgldimgglfkfhskDTNNINTITE 594
                 9*************************99998888877541169*************8877666533444444449**********98766666777777 PP

     DUF1712 498 eksrsk.ndktekkdeeilnfldklseekLldlnvellrilttlkrs.lkd.iqeErllklnngwlvyikennrelylilknwfqdnktkka.....ss 588
                 +++++  n  ++ +++ + nfld++se+kL++l++ +  +l+ +k+s +k+ i eErll+l ng+l+yi+++   l++i+ nwf+ ++++++      s
  CCD22972.1 595 ASEEGEnNQISKGQKRLYRNFLDNISEDKLWELHLKITDFLNMIKNSqKKSgIVEERLLRLGNGLLCYIRDDHDRLVIIISNWFEMDEKRTRlftrgDS 693
                 777777788999999999*****************************8888*****************************************9**9988 PP

     DUF1712 589 tlldlfeslgrdvtrwlee 607
                    +l+ slg+dv +w++ 
  CCD22972.1 694 DEDTLLRSLGKDVMEWWDA 712
                 8899*************85 PP

>> DUF5595  Domain of unknown function (DUF5595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   8.4e-06      0.05       6      36 ..     110     140 ..     105     145 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.4e-06
     DUF5595   6 gievnkLFldYtvkcYekFmqgeDtFeeeda 36 
                 +i  n+ +l Y++ cY+ F+++ D+F ++++
  CCD22972.1 110 NIIPNQFYLGYLWLCYKIFVMQYDEFANFHD 140
                 5677999*******************99986 PP

>> DUF126  Aconitase X swivel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     4e-05      0.24      32      68 ..     514     550 ..     504     553 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4e-05
                 EES--S--SS-TTHHHHHHHHT-S-SEEEESS--HHH CS
      DUF126  32 vlpsgkGStvgsyvllelakngtaPaAlilreadpil 68 
                  ++s+   ++gs ++++ ++++ +P  l+++e+d+i 
  CCD22972.1 514 NIKSSIPRCSGSRMMMDSMRENDSPLMLVIQEIDQIF 550
                 566666679**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5276.79
//
Query:       CCD22973.1  [L=586]
Description: hypothetical protein NDAI_0A08190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.8e-126  421.2  33.4   5.5e-126  421.0  33.4    1.0  1  AA_permease    Amino acid permease
    3.1e-21   75.7  36.3    4.1e-21   75.3  36.3    1.1  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.0  33.4  6.1e-130  5.5e-126       1     477 [.      81     553 ..      81     555 .. 0.99

  Alignments for each domain:
  == domain 1  score: 421.0 bits;  conditional E-value: 6.1e-130
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  hv++ia+ gviGt+lfv++g+ l  +G + +ll+++++++ i+++++s++e+++++p+s+ f  + +++++++l+ + ++n++f++++++++e+++++
   CCD22973.1  81 HVQLIAISGVIGTVLFVAIGKPLYRGGAAFLLLGFAIWCIPILCITVSTAEMVCFMPVSSPFLRLTKKCVDDSLAMMASWNFWFLECVQIPFEIVTVN 178
                  9************************************************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfa..ke 193
                   +i++w   +d++   +  +v ++++++i++++vk+yge+ef++a++kii++ +++++++i++ gg+p++++ gfr++g+  +  k ++p+g    + 
   CCD22973.1 179 TIIHYW--RDDYS-PAIPLIVQIILYVLISFCAVKYYGETEFWMASLKIIMAMGLFLFTFITMLGGNPKRDRfGFRYFGETPF--KMYFPNGDVsqGH 271
                  ******..****9.999*****************************************************************9..999*999765567 PP

  AA_permease 194 eegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.....aspfvifikesgvs 286
                  + g+f++f+ ++++++f+++G e++ ++agE+k P+k +P+a++qv+ir+ti++++s+l++g+l++ nd+ l++++++a     +sp+vi++++ g+ 
   CCD22973.1 272 SAGYFQGFLTCLIQASFSIAGGEYISMLAGEIKIPRKVLPIAFKQVFIRLTILFLGSCLCVGILCSANDPALTAAINEArpgagSSPYVIAMNNMGIQ 369
                  7899********************************************************************************************** PP

  AA_permease 287 vlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwllii 384
                  +l++++n++++taa+ss+n+++y++sR+ly +a+dg+aPk++++++k+gvP+ a+ +s ++++++ll  ++n+a  +v n+l++i + ++li++ +i+
   CCD22973.1 370 ILPDIVNVILITAAFSSGNAYTYCSSRTLYGMAMDGYAPKIFTRCNKQGVPIYAVGISVAWGFISLLQLNSNSA--VVLNWLINIITTSQLINFACIC 465
                  **************************************************************************..********************** PP

  AA_permease 385 lsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrpql 477
                  ++yl fR+a+ +q+ ++  l+fk++++p++vi++l+++ii++ ++++  + +     + w+ ++f++ yl+v++ l i++++k+++k+++++l
   CCD22973.1 466 ITYLFFRRAYLLQKDDLPHLPFKSWGQPYTVIVGLVSVIIMIFVQGYSVFYK-----SLWNKQDFLFCYLMVFVDLGIYLIYKFIWKRGKDKL 553
                  ****************************************************.....*********************************987 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3  36.3   4.5e-25   4.1e-21       8     403 ..      84     511 ..      80     534 .. 0.77

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 4.5e-25
  AA_permease_2   8 alvigsvigsgifvkn..laasggpa.lilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaa 100
                    +++i+ vig+  fv+    ++ gg+a l+l + i ++ + l+     aE+ + +p s      tk+     +a +++w +wf   + +++  +v +
     CCD22973.1  84 LIAISGVIGTVLFVAIgkPLYRGGAAfLLLGFAIWCIPI-LCITVSTAEMVCFMPVSSPFLRLTKKCVDDSLAMMASWNFWFLECVQIPFE-IVTV 177
                    689***********9666455588883555555666666.9999999***666******************************99977654.6677 PP

  AA_permease_2 101 syllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.........stetdtffpngw 187
                    +++++ +  d+ +      +  i+ +il +li+ +++k ++   ++++ lki++ + +++ + + +++g+   +          +++    +++++
     CCD22973.1 178 NTIIHYWRDDYSP-----AIPLIVQIILYVLISFCAVKYYGETEFWMASLKIIMAMGLFLFTFITMLGGNPKRDRfgfryfgetPFKMYFPNGDVS 268
                    7777779888866.....344566788888999999*****************9999999999999988888777888886644222222333355 PP

  AA_permease_2 188 pg....v....llgllivlwsfdGfesaanvsee..vkkkdvpkai..figllivlvlyllvniaflgvvpddei......anlsnlgsvaalffe 265
                    +g    +    l  l ++ +s++G e+++  + e  +++k +p+a   +++ l++l+l+  + + +l   +d  +      a ++   s++ + ++
     CCD22973.1 269 QGhsagYfqgfLTCLIQASFSIAGGEYISMLAGEikIPRKVLPIAFkqVFIRLTILFLGSCLCVGILCSANDPALtaaineARPGAGSSPYVIAMN 364
                    54322242332445566*****************6555799****988888899999999999999999999999665554222223346999*** PP

  AA_permease_2 266 avggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas.saaynfllsvsslglii 360
                    ++g +++  iv+++++ +++ ++n++++ ssr+l+ +a dg+ P+ f + nk+g pi+a+ +++   +i +ll l ++ +  +n+l ++ + + +i
     CCD22973.1 365 NMGIQILPDIVNVILITAAFSSGNAYTYCSSRTLYGMAMDGYAPKIFTRCNKQGVPIYAVGISVAWGFI-SLLQLNSNsAVVLNWLINIITTSQLI 459
                    *******************************************************************65.5566554469999************* PP

  AA_permease_2 361 syllliigalilrkkrphlkr.........pgkilvaiigalfllfllvalf 403
                     ++ + i++l+ r+    +k          +g + ++i+g++++++++++  
     CCD22973.1 460 NFACICITYLFFRRAYLLQKDdlphlpfksWGQPYTVIVGLVSVIIMIFVQG 511
                    **99999999999774433333444554556666677777777777766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 3565.22
//
Query:       CCD22974.1  [L=170]
Description: hypothetical protein NDAI_0A08200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-15   56.9   0.0      2e-15   56.5   0.0    1.2  1  ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwi


Domain annotation for each model (and alignments):
>> ATP-synt_DE_N  ATP synthase, Delta/Epsilon chain, beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   1.1e-19     2e-15       1      73 [.      37     111 ..      37     119 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 1.1e-19
                    EEEEEEESSSEEEEEE.EEEEEEEESSSEEEE-TT--SEEEEEESEEEEEEE.GGGEEEEEEESSEEEEEETTEE CS
  ATP-synt_DE_N   1 lkleivtpervvfsge.veevvaptteGelgilpgHaplitaLkpgelrikt.edgeeesiavsgGflevqdnkv 73 
                    lkl+   p ++++s++ v++v +p+++G++gil++H+p++ +L+ g+++i + ++++++++++ gGf+  q+n+ 
     CCD22974.1  37 LKLQFALPHETLYSNTeVKQVNLPAKSGQIGILANHIPTVEQLNSGVVEIFEsTNNSTKKYFIPGGFATMQPNST 111
                    6899999*******999********************************987345889*************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1253.22
//
Query:       CCD22975.1  [L=647]
Description: hypothetical protein NDAI_0A08210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-23   81.6   0.2    1.7e-22   79.7   0.2    2.0  1  Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
    4.7e-11   41.8   0.0      1e-10   40.7   0.0    1.5  1  Rad21_Rec8    Conserved region of Rad21 / Rec8 like protein
  ------ inclusion threshold ------
      0.039   14.2   0.1      0.039   14.2   0.1    3.2  3  CNDH2_N       Condensin II complex subunit CAP-H2 or CNDH2, N
       0.15   12.7   0.2       0.94   10.2   0.2    2.4  1  Ycf34         Hypothetical chloroplast protein Ycf34


Domain annotation for each model (and alignments):
>> Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.2   3.8e-26   1.7e-22       7     100 ..      13     118 ..       8     125 .. 0.85

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 3.8e-26
  Rad21_Rec8_N   7 llskkgplakvWlaAtlekklskkeilevniekaveeIlnp...........eaplaLrlsgqLllGvvriyskkvkyllsDceealekikkafksi 92 
                   + +k gpla++WlaA++   + k  il++ni+++++eI++            +++++Lr+sg+Ll G+vr+yskk+ +llsD++++l+ki+++fk  
    CCD22975.1  13 ISAKDGPLAQIWLAANMA-TIPKGSILQTNITESAKEIAKVsgcsssktdveDHHITLRTSGELLQGIVRVYSKKAGFLLSDIKDTLTKISSLFKLN 108
                   56789************8.8********************757776655554445****************************************77 PP

  Rad21_Rec8_N  93 k.ea.kidlp 100
                   + ++ ki+ +
    CCD22975.1 109 QrNQfKITIN 118
                   6344455554 PP

>> Rad21_Rec8  Conserved region of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.3e-14     1e-10      10      50 ..     595     635 ..     587     639 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 2.3e-14
                 --------HHHHHHHHHHHHHHHHTSEEEEESSTT--EEEE CS
  Rad21_Rec8  10 llpagktRkeAArlFyelLvLatkgvIkvkQeaPYgdIlit 50 
                  + + +t++eA++ F+++L+Lat+g+I+++Qe+ +g+I  t
  CCD22975.1 595 DIEPRITKREASKGFFDILSLATSGCIDLDQEETFGEINMT 635
                 5667789*******************************765 PP

>> CNDH2_N  Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   8.7e-06     0.039      35      93 ..      61     119 ..      41     131 .. 0.79
   2 ?    0.1   0.2       0.2   9.1e+02      71      95 ..     451     467 ..     428     482 .. 0.48
   3 ?   -2.4   0.1       1.2   5.4e+03      72     107 ..     574     609 ..     568     612 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.7e-06
     CNDH2_N  35 dggkttlnFaeAaLliqgsavvYsrKveyLyslvyqtlellskkkkkkqkesesekged 93 
                 d +++++       l+qg + vYs+K  +L s + +tl  +s+  k +q+++ + + ++
  CCD22975.1  61 DVEDHHITLRTSGELLQGIVRVYSKKAGFLLSDIKDTLTKISSLFKLNQRNQFKITINN 119
                 556666777777789***************************99998887777665554 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.2
     CNDH2_N  71 tlellskkkkkkqkesesekgeded 95 
                  l+++ ++++        +++ed++
  CCD22975.1 451 RLHFVDEQHQ--------SQQEDQE 467
                 2222222222........1111111 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.2
     CNDH2_N  72 lellskkkkkkqkesesekgededaeaaeaeeedeF 107
                 le   ++k + +++ + ++++d + + +++e+++ F
  CCD22975.1 574 LEDFHNQKADYNNDDNGDENNDIEPRITKREASKGF 609
                 566667777666666666777777666777666666 PP

>> Ycf34  Hypothetical chloroplast protein Ycf34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00021      0.94      15      59 ..     451     496 ..     446     503 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
       Ycf34  15 tYhavEkqHqqkhlteepdfepeeptinvnirel.tkeeeielewD 59 
                   h v++qHq ++ ++e + +  ep+in+++    +  ++++ e D
  CCD22975.1 451 RLHFVDEQHQSQQEDQEENEDMVEPQINMSLGLQdDLINDTGSETD 496
                 569**************************99533244455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1158  (0.0645881); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4726.95
//
Query:       CCD22976.1  [L=2499]
Description: hypothetical protein NDAI_0A08230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.4e-166  554.7  12.9   2.4e-166  554.7  12.9    4.2  4  DRIM            Down-regulated in metastasis
  ------ inclusion threshold ------
      0.012   15.3   7.8        1.6    8.4   0.0    5.3  8  DUF4042         Domain of unknown function (DUF4042)
      0.039   14.1   5.0        5.1    7.2   0.1    5.4  5  ParcG           Parkin co-regulated protein
       0.29   11.3   4.9         29    4.9   0.0    5.6  5  RTP1_C1         Required for nuclear transport of RNA pol II 
        4.3    7.5   7.6        5.8    7.1   0.6    3.6  3  NYD-SP28_assoc  Sperm tail C-terminal domain
        6.5    6.6   6.9         14    5.5   6.9    1.6  1  DOR             DOR family


Domain annotation for each model (and alignments):
>> DRIM  Down-regulated in metastasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.5      0.22   6.6e+02     368     432 ..     222     291 ..     103     345 .. 0.56
   2 !  554.7  12.9  8.1e-170  2.4e-166       2     622 ..     823    1407 ..     822    1408 .. 0.95
   3 ?   -0.5   4.4     0.095   2.8e+02     320     449 ..    1687    1827 ..    1671    1941 .. 0.78
   4 ?   -1.1   1.1      0.15   4.5e+02     326     431 ..    2270    2385 ..    2241    2451 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.22
        DRIM 368 edeeeigselLlphvsslLeylsalleksaas......kkdkskellereleiLsrlaplvedseqassLl 432
                 ++e + +  +L+ + ++l+++ ++l  k  ++      +++ +   ++ ++++L+ +   +++ ++a++L 
  CCD22976.1 222 DEETNSYNGFLTLFTEALISTTGSLHSKA-KVmlntliEESLTISDSDLCISLLCDIWMNISKHTDAENLA 291
                 33334455555555555555544444333.23344443222122223445555555544444444444333 PP

  == domain 2  score: 554.7 bits;  conditional E-value: 8.1e-170
        DRIM    2 wslkdlkalLklfakfknpkalykseelyeallelLsngdeeiQklALkclltyknpaltpYkenLenLlddkkfrdeLtkfklssees.ieeehra 97  
                  w  ++++ lLk+++kfkn+k+++k+ee++  ll lL ++ +++QklAL+++l+yk+p l++Y+enL+nLldd+ frde+tkf++++e++ ie+ +++
  CCD22976.1  823 WQDSERNTLLKMLGKFKNIKSCFKAEEVHGRLLILLGSRSTDVQKLALDAILAYKDPILNKYRENLKNLLDDTLFRDEITKFLSKDESQvIEQGDED 919 
                  88899*******************************************************************************995555******* PP

        DRIM   98 elmpvllRiLyGrmiskkgssasgkagqqarRaavLrfLaglseeelssFldlalgplkkvleaaetqgsdelkelvnkldev..dleevlplrrql 192 
                   lmp++lRiL+Gr+++  +s+ +++     r+ a +++L++l+e+ +++Fl+l  ++++               +++++++++  +++++ +++++ 
  CCD22976.1  920 ILMPYVLRILFGRAQTPVTSGIKKG-----RKFAAISILPNLKEQFIIQFLQLGSSRFD-------------FDYFFENQYQMesSEVSLTNMKKIN 998 
                  *******************888877.....***************************98.............4567777766667899********* PP

        DRIM  193 gflnlledvlkelgsklapflpkllklllyclaaaqrrlkssseeeeeeeeevlasllkniRqlglkcLvdlfsnfgesedwspyldaifeevvsPr 289 
                  gf+++l++ l +lg+++ ++++++l++lly + ++ + l         + e + +++++n+Rq++lkcL+++f+n+ges +ws++++ i+++v++Pr
  CCD22976.1  999 GFVTILNSALGVLGANFPSVIDTVLRPLLYGIGMSYHALMIP------NREIQVTKTAHNLRQQSLKCLNSIFQNLGESLNWSNFVNDIYTIVIKPR 1089
                  ************************************766555......3456678**********************9989**************** PP

        DRIM  290 lekLpsenlqspsaLlkLfltWsssprlaplLakydssvlpavielLsapkakesVvefvldivenllkladeeeeeeedeeeigselLlphvsslL 386 
                  l ++++enlq+ps+L++++++W+++++++p+L++++ + ++a+++++s++++kesV++++l+ ++n++k++++        +++++el++  +s++L
  CCD22976.1 1090 LGSFSDENLQQPSSLMNIMVYWATNEQFFPFLYHDNFASVHALMKTISSEHVKESVINVILEACNNIIKHPTQ--------QDQYAELVAIVASTCL 1178
                  *********************************************************************8766........778************* PP

        DRIM  387 eylsalleksaaskkdkskellereleiLsrl..aplvedseqassLldlllplLrkpsrrvsektkvelLkilenllrlyde..devdlpekllkt 479 
                  + l+ l+++       +++e ++ + ++L+++  + +v+d+e+++ L+d+l+ +L   +++++ +++ ++Lk+l+ ll++y++  +++   ekl+k+
  CCD22976.1 1179 RVLPFLFKRF------SNTESTSIATDLLLNMteSGFVQDDETKQFLIDSLVLILGD-AKSMNTEDHLKILKVLSVLLENYNCswNKI---EKLYKV 1265
                  *******999......56889999********99*********************77.669**********************97777...****** PP

        DRIM  480 lsslfsrlkdreaRklLcevlkalakkdpeleevadllsdLNayskrrldepDfdrRlsAFkkineekyksltleqwlpllhnclffirdeeelsir 576 
                  lssl+++++dr+ R++L++++ +++++++e+e+v++l++dLN++s++r++e+Df+rRlsAFk+++e+ yk+++   wlp++++cl+fi+d+eel+ir
  CCD22976.1 1266 LSSLYKSYSDRTLRESLSSLFLVIGDRFSEMEQVSKLVADLNSFSTKRMQEYDFQRRLSAFKEFTENTYKTYSDMAWLPIIYTCLYFINDQEELAIR 1362
                  ************************************************************************************************* PP

        DRIM  577 snAsellkrfieaaaskseeepskleleellkdillpalkrglrsk 622 
                  +n++++l +fi++++sk++  +++    ++lk+++lpal++glr++
  CCD22976.1 1363 TNSTHTLIKFIDYINSKPTIADANV-SISMLKNVILPALRTGLRKS 1407
                  ******************9997733.5688**************75 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.095
        DRIM  320 lLakydssvlpavielLsapkakesVvefvldivenllkladeeeeee...............edeeeigselLlphvsslLeylsalleksaaskk 401 
                  +L+   ++vl+++ ++L+++ +  s  + v  i+e ++ +a +e++ +               +++e   +++ l h +++L+ ++all +  +   
  CCD22976.1 1687 VLSFTVHHVLKSLESVLNHSDLDASAGMLVRVIMEDMFGTAGQEKDSDnyhskmkevkvnrsyDTAEVLSANISLSHFHEILRPIKALLMERIN--- 1780
                  44446689999999999999999999999999*****999998877779**********9999888899999999999*********9976643... PP

        DRIM  402 dkskellereleiLsrlaplvedseqas..sLldlllplLrkpsrrvsek 449 
                      +  ++  e+L r +  ++ +e as  ++l+l+  ++++p  + +++
  CCD22976.1 1781 ---MKNQNKLTELLRRYSLGINHNEAASktDVLSLCYEIFTQPELEARKP 1827
                  ...33344555666666666666553333388888888888866555544 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.15
        DRIM  326 ssvlpavielLsapkakesVvefvldivenllkladeeeeee........edeeeigselLlphvsslLeylsalleksaaskkd..kskellerel 412 
                  ++++++v+  L+ap ++e  ++  ++++ +++kl d++++          + +ee +  +++ + +  ++y+ ++l ++ +s+++   s    ++++
  CCD22976.1 2270 QTICSRVLHQLNAPAISEGLAQESVKLLLKIVKLWDANKTPYvtkeatkqMGAEEEEPMVMKTNYKNAIDYVVTRLSSIVRSEENptDSFLSKKSCI 2366
                  4566667777777777777777777777777777666555336677777766666777777777777777777777666555444112334445567 PP

        DRIM  413 eiLsrlaplvedseqassL 431 
                  +++  + ++++d+++  sL
  CCD22976.1 2367 QLMALIIQVLNDENEIISL 2385
                  7777777777777665544 PP

>> DUF4042  Domain of unknown function (DUF4042)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.7   8.2e+03      71     106 ..      44      81 ..      43      84 .. 0.75
   2 ?   -3.2   0.0         2   5.9e+03      97     130 ..     288     321 ..     285     326 .. 0.87
   3 ?    8.4   0.0   0.00054       1.6      52     130 ..     590     668 ..     576     680 .. 0.83
   4 ?   -1.9   0.0      0.77   2.3e+03       2      18 ..    1053    1069 ..    1052    1084 .. 0.78
   5 ?   -1.0   0.1       0.4   1.2e+03     119     158 ..    1238    1277 ..    1221    1301 .. 0.68
   6 ?   -3.8   0.1       2.9   8.8e+03     116     161 ..    1665    1710 ..    1647    1726 .. 0.53
   7 ?   -2.8   0.1       1.5   4.4e+03     115     131 ..    1902    1918 ..    1893    1963 .. 0.68
   8 ?    6.3   0.0    0.0023       6.9      42      71 ..    2099    2128 ..    2087    2158 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.7
     DUF4042  71 sksfLsqaeesk..kksgaFtpfsvsLasiimelhrgl 106
                 s++fL+  e+ k  + s  Ft fs  + + +++l + l
  CCD22976.1  44 SSHFLASYEHWKdiNLSAGFTNFSSEINNLVQTLPQIL 81 
                 5677777777776666778******9999998876655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2
     DUF4042  97 siimelhrglllaleaetslqvltqllkcLavlv 130
                 + +  ++ ++l++l+++ ++  l +++k L+ +v
  CCD22976.1 288 ENLAPIYDSVLELLDNNLKNFHLNNIVKLLSTMV 321
                 56777899999******9999*********9998 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00054
     DUF4042  52 pspkvRaaalqvlaalLdgsksfLsqaeeskkksgaFtpfsvsLasiimelhrglllal.eaetslqvltqllkcLavlv 130
                 p  k+R  +l+++++l++ +k+ +    e+ k+    tp+s s a+i+++  r+l     + e+++ v+t  lkcL  l+
  CCD22976.1 590 PDGKIRYQSLNLMTTLFNIEKKEFPSILEEFKRI-EETPLSLSNARILTTRIRNLGPEFaKLEKDKIVTTTFLKCLFGLL 668
                 45699*************8887777776555444.77******************86551668999999*******8776 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.77
     DUF4042    2 vRiaalqllqalvkavd 18  
                  +R+++l++l+++++++ 
  CCD22976.1 1053 LRQQSLKCLNSIFQNLG 1069
                  799999***99999864 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.4
     DUF4042  119 ltqllkcLavlvsatPyerLkkglltevvksvkkllkekd 158 
                   +++lk+L+vl+++   +  k + l++v++s+ k  +++ 
  CCD22976.1 1238 HLKILKVLSVLLENYNCSWNKIEKLYKVLSSLYKSYSDRT 1277
                  4678999999999876666666667777777766655544 PP

  == domain 6  score: -3.8 bits;  conditional E-value: 2.9
     DUF4042  116 lqvltqllkcLavlvsatPyerLkkglltevvksvkkllkekdsnv 161 
                  ++ lt ++k L+  ++     +     + +v+ks+++ l+++d + 
  CCD22976.1 1665 PTYLTFIIKELISALQRGSQIHVLSFTVHHVLKSLESVLNHSDLDA 1710
                  4555555555544444333333333345555555555555555554 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 1.5
     DUF4042  115 slqvltqllkcLavlvs 131 
                    ++lt+ l++L++lv+
  CCD22976.1 1902 NESLLTSTLRVLVILVK 1918
                  46789999999999996 PP

  == domain 8  score: 6.3 bits;  conditional E-value: 0.0023
     DUF4042   42 atLltillkDpspkvRaaalqvlaalLdgs 71  
                   +L ++  +D sp++R +a  +l+++++  
  CCD22976.1 2099 ISLANVSFNDDSPRCREMATVLLTHMFKVL 2128
                  5899999*******************9754 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.25   7.6e+02      78     145 ..     129     198 ..     103     224 .. 0.78
   2 ?    0.9   0.0      0.15   4.4e+02      75     112 ..    1389    1427 ..    1366    1432 .. 0.85
   3 ?    1.1   0.0      0.12   3.6e+02     146     174 ..    1643    1671 ..    1629    1679 .. 0.84
   4 ?    7.2   0.1    0.0017       5.1      54     111 ..    1859    1920 ..    1847    1953 .. 0.80
   5 ?   -1.5   0.0      0.76   2.3e+03      55      94 ..    2358    2402 ..    2330    2439 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.25
       ParcG  78 lpklilplkeaLntrdeeviesaLkvlqklvk.aseligeaLvpyyrqlLpvlnlfknkr.vnlgdkidy 145
                 +  li  l +a+++++ +++e  +++l  + k  s+l  + L+p +  l p l+  k+   +  ++++++
  CCD22976.1 129 VTSLIALLDSAIDSESLNIFEWGFNALAYIFKyLSRLLTDDLIPTFTLLFPLLSHKKEYLsRFSAEALSF 198
                 6789999999***********99999999887368999********999999995544221234555555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.15
       ParcG   75 lpvlpklilp.lkeaLntrdeeviesaLkvlqklvkase 112 
                  +++l ++ilp l++ L+++de++    +++l  +v++ +
  CCD22976.1 1389 ISMLKNVILPaLRTGLRKSDEAIQSEYINLLAYIVESAK 1427
                  678999999868********************9998865 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.12
       ParcG  146 rkkknikdliqetlellerngGedalinI 174 
                  +k++++++ +++tl ++++n G+ +l  I
  CCD22976.1 1643 SKSEDLREAVRSTLAKISTNLGPTYLTFI 1671
                  57899******************999754 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0017
       ParcG   54 yrflategikdllea....ageekilpvlpklilplkeaLntrdeeviesaLkvlqklvkas 111 
                  y+ + ++ + dll++    +++   ++ l   i  lk aL + +e+ ++s+L+vl  lvk +
  CCD22976.1 1859 YTHVMQKFALDLLRTvisrHKNLMTVSYLEGFIPLLKDALLSDNESLLTSTLRVLVILVKLD 1920
                  66677777777777775334444556678899999***********************9875 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 0.76
       ParcG   55 rflategikdllea.....ageekilpvlpklilplkeaLntrde 94  
                  +fl+++ +++l+       + e++i+++  k+ilpl   L+ +++
  CCD22976.1 2358 SFLSKKSCIQLMALiiqvlNDENEIISLSEKIILPLYVYLEENHN 2402
                  466666666666555556777788888888888888777776654 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.12   3.6e+02      17     104 ..     149     241 ..     136     248 .. 0.72
   2 ?    1.0   0.0      0.15   4.6e+02      58      83 ..     777     802 ..     777     827 .. 0.88
   3 ?   -1.8   0.1       1.1   3.4e+03      23      83 ..    1132    1188 ..    1127    1207 .. 0.54
   4 ?   -3.5   0.2       3.9   1.2e+04      17      54 ..    1865    1904 ..    1862    1922 .. 0.65
   5 ?    4.9   0.0    0.0098        29       7      59 ..    2105    2154 ..    2100    2155 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.12
     RTP1_C1  17 ahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey.....eeenekeslderlkvGEaLlr 104
                  +g + L+ +++  s+  + d+  +++ll+  L+++ +Y+   + ++L+ L+ + +++ lk+L++++     ++e++++        +EaL+ 
  CCD22976.1 149 EWGFNALAYIFKYLSRLLTDDLIPTFTLLFPLLSHKKEYLSRFSAEALSFLIRKANTKNLKTLTHYVfqkviNDEETNSYNGFLTLFTEALIS 241
                 5666677777777776666667778999999********************************998877764333333333344455666655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.15
     RTP1_C1  58 LnaikgLvaLadvfpeevlklLleey 83 
                 L+a+++L +L++++++++++ L ++ 
  CCD22976.1 777 LKAMSLLPQLVERHSKDIIPYLFNQM 802
                 78999*****************9987 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.1
     RTP1_C1   23 LrkliekkskeavldiekilkllleaLk...dedsYvYLnaikgLvaLadvfpeevlklLleey 83  
                  L k i++++  +++ i+ il+ + + +k   ++d+Y  L      va++     +vl+ L +++
  CCD22976.1 1132 LMKTISSEH-VKESVINVILEACNNIIKhptQQDQYAEL------VAIVASTCLRVLPFLFKRF 1188
                  555555554.55566666666666666633345666544......4444444456777777777 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 3.9
     RTP1_C1   17 ahglvlLrkliekkske.avldiekilkllleaL.kdeds 54  
                    +l lLr++i+++++  +v+ +e  + ll++aL +d++s
  CCD22976.1 1865 KFALDLLRTVISRHKNLmTVSYLEGFIPLLKDALlSDNES 1904
                  5689999999987764357778888888888854045444 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.0098
     RTP1_C1    7 dlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLn 59  
                  + +d+ + +r  + vlL+++++  +    +++++i k ++  Lk++++Y +Ln
  CCD22976.1 2105 SFNDDSPRCREMATVLLTHMFKVLE---PSSLSTIEKYIIAWLKQSEDYTFLN 2154
                  57899*******************7...7788888899999**********98 PP

>> NYD-SP28_assoc  Sperm tail C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.86   2.6e+03      10      39 ..    1234    1263 ..    1230    1272 .. 0.76
   2 ?    2.3   0.1      0.06   1.8e+02      15      56 ..    1515    1557 ..    1504    1560 .. 0.77
   3 ?    7.1   0.6    0.0019       5.8      24      59 ..    1760    1794 ..    1753    1794 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.86
  NYD-SP28_assoc   10 ipeeklklWdalekaLekYhevLteRakli 39  
                       +e++lk+ + l + Le+Y+   ++ +kl 
      CCD22976.1 1234 NTEDHLKILKVLSVLLENYNCSWNKIEKLY 1263
                      579999999**********97666666665 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.06
  NYD-SP28_assoc   15 lklWdalekaLekYhevLteRaklieetesLekq.NeeLrnlL 56  
                      +  W++    +++Y ++L+++ + i+ t  L +q  + Lrn L
      CCD22976.1 1515 FMSWNQYKALVRRYVSTLKNKPNSIKVTVLLINQtSASLRNSL 1557
                      567*******************999999666544156777766 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0019
  NYD-SP28_assoc   24 aLekYhevLteRaklieetesLekqNeeLrnlLkqy 59  
                      +L+++he+L+  ++l++e   +++qN +L +lL++y
      CCD22976.1 1760 SLSHFHEILRPIKALLMERINMKNQN-KLTELLRRY 1794
                      799**********************9.588888776 PP

>> DOR  DOR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   6.9    0.0048        14     122     228 ..    2395    2497 ..    2392    2499 .] 0.66

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0048
         DOR  122 VYavhnsrkslseessqagtesevnldlgsaelkepepeveaeaaksvqkeaqekveqrircllaalaaaaekLeqqklaresqkskekkerqqlcr 218 
                  VY  +n++++ s  ++q++   + ++ ++  e k p    + ++a s  k+   + +q+ ++  a+la +a  L  qk++r+ ++s+ek ++ +   
  CCD22976.1 2395 VYLEENHNYNAS--EEQEQLGIFAQECMQMLESKVPV--SAFTKAYSNVKQIVIRRRQERKAKRATLAINAPDLAAQKKLRKHNRSREKRKHEKDDS 2487
                  563333333333..33334444444444444444444..333344433333334678888999999****************************999 PP

         DOR  219 salkRqNkvR 228 
                     +R+Nk R
  CCD22976.1 2488 GYYQRKNKKR 2497
                  9******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       974  (0.0543254); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.26u 0.28s 00:00:01.54 Elapsed: 00:00:00.48
# Mc/sec: 15629.03
//
Query:       CCD22977.1  [L=263]
Description: hypothetical protein NDAI_0A08240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.4   2.2      0.038   14.3   0.9    2.1  2  KxDL      Uncharacterized conserved protein


Domain annotation for each model (and alignments):
>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.9   2.1e-06     0.038      25      77 ..      35      87 ..      27      95 .. 0.93
   2 ?   -0.6   0.0      0.09   1.6e+03      62      78 ..     104     120 ..      93     133 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.1e-06
        KxDL 25 lnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkak 77
                +n++  eL+++++ + ++++ ++a++++  k +  + + L+s+ kki+s+ +k
  CCD22977.1 35 FNDSIDELQNVQNDLINCHSIIQADINDELKQIDIIENHLKSSLKKIDSFYKK 87
                899999******************************************99665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.09
        KxDL  62 kdLesifkkirslkakl 78 
                 k L+++f +++s+k+++
  CCD22977.1 104 KSLDKLFINVDSIKENV 120
                 45666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1505  (0.0839422); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1819.27
//
Query:       CCD22978.1  [L=113]
Description: hypothetical protein NDAI_0A08250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-22   77.1   5.6    1.1e-21   76.8   5.6    1.0  1  Prefoldin_2   Prefoldin subunit
     0.0036   17.1   2.2          1    9.3   0.1    2.2  2  GIT_CC        GIT coiled-coil Rho guanine nucleotide exchange
  ------ inclusion threshold ------
       0.25   11.5   4.5       0.23   11.6   0.8    2.0  2  SAS4          Something about silencing, SAS, complex subunit
       0.46   11.2   5.0        6.3    7.6   0.8    2.1  2  Occludin_ELL  Occludin homology domain
        0.5   10.4   4.0       0.74    9.9   0.3    2.1  2  DUF2205       Short coiled-coil protein


Domain annotation for each model (and alignments):
>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   5.6     3e-25   1.1e-21       5     106 .]      12     113 .]      10     113 .] 0.98

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 3e-25
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  Prefoldin_2   5 nkfqqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeelqkk 102
                   k+++++q+l+ql++++ +l ++++e++ vl++l+++d+++k+y+++G++lv+ +++++++ L+++  +l+  ++t+ ++l k+ +e++++k+ ++++
   CCD22978.1  12 LKYNEYKQTLEQLQSKVIELGNDKDEHDIVLDTLKTADPERKCYRMIGGALVESNVKTTLPILQTKRQNLQDAVNTMRSELIKIAEEFDKWKKDNKIQ 109
                  69**********************************************************************************************99 PP

                  TS-- CS
  Prefoldin_2 103 lqqq 106
                  + qq
   CCD22978.1 110 VVQQ 113
                  9876 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.3   0.00093       3.3      41      60 ..      16      35 ..       5      39 .. 0.82
   2 !    9.3   0.1   0.00028         1      25      62 ..      62     101 ..      58     108 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00093
      GIT_CC 41 slsdelrlLQskvqkLqaeN 60
                + ++ l++LQskv +L ++ 
  CCD22978.1 16 EYKQTLEQLQSKVIELGNDK 35
                56899**********98775 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00028
      GIT_CC  25 laaseakiqq..LlkvNtslsdelrlLQskvqkLqaeNaq 62 
                 l+ s++k +   L+   ++l+d ++ + s++ k+++e ++
  CCD22978.1  62 LVESNVKTTLpiLQTKRQNLQDAVNTMRSELIKIAEEFDK 101
                 6666666665656677778888888888888887777544 PP

>> SAS4  Something about silencing, SAS, complex subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.6     0.076   2.7e+02      32      47 ..      12      27 ..       2      53 .. 0.72
   2 ?   11.6   0.8   6.3e-05      0.23      17      94 ..      35     107 ..      30     111 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.076
        SAS4 32 sEadrlerllekLqgq 47
                  ++++++ le+Lq++
  CCD22978.1 12 LKYNEYKQTLEQLQSK 27
                5577788888888543 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 6.3e-05
        SAS4  17 rqEkrmrniekeraesEadrlerllekLqgqdwlrvlgkitkindpkdkkelerkreltikeieallekferwkkeek 94 
                 ++E  +  +  + a  E + ++ +   L +++ +++l+    i   +++++l+ + + + +e+ ++ e+f++wkk +k
  CCD22978.1  35 KDEHDIVLDTLKTADPERKCYRMIGGALVESNVKTTLP----ILQ-TKRQNLQDAVNTMRSELIKIAEEFDKWKKDNK 107
                 66666666677777778888888888888888888888....554.899*************************9987 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.8    0.0018       6.3      12      42 ..       5      32 ..       1      58 [. 0.70
   2 ?    6.2   0.3    0.0046        17      34      76 ..      67     109 ..      52     113 .] 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0018
  Occludin_ELL 12 rYkaeFnkeYkeYkelhaeleevskkfseLe 42
                  +  ++F+ +Y+eYk+  ++l+   +k+ eL 
    CCD22978.1  5 QRDNVFQLKYNEYKQTLEQLQ---SKVIELG 32
                  556789999999998766554...4444444 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0046
  Occludin_ELL  34 vskkfseLerelkelkegskeykkieeeilqeykklkkdpeyq 76 
                   v+ ++  L+++ ++l++  +++++   +i +e+ k+kkd++ q
    CCD22978.1  67 VKTTLPILQTKRQNLQDAVNTMRSELIKIAEEFDKWKKDNKIQ 109
                   5666777889999999999999999999999999999999877 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.3     0.056     2e+02      16      44 ..       4      33 ..       1      40 [. 0.64
   2 ?    9.9   0.3   0.00021      0.74      15      46 ..      75     106 ..      64     109 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.056
     DUF2205 16 earerLqq.qakeLqssLqaLaervdeVke 44
                ++r+++ q + +e +++L++L  +v e  +
  CCD22978.1  4 QQRDNVFQlKYNEYKQTLEQLQSKVIELGN 33
                555554444778888899999888866544 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00021
     DUF2205  15 rearerLqqqakeLqssLqaLaervdeVkeeh 46 
                 + +r++Lq  ++++ s L ++ae  d+ k+++
  CCD22978.1  75 QTKRQNLQDAVNTMRSELIKIAEEFDKWKKDN 106
                 67899*********************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1441  (0.0803726); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 847.99
//
Query:       CCD22979.1  [L=483]
Description: hypothetical protein NDAI_0A08260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     1e-121  406.7   7.2   1.2e-121  406.4   7.2    1.0  1  DDOST_48kD  Oligosaccharyltransferase 48 kDa subunit beta
  ------ inclusion threshold ------
      0.081   12.8   1.0        3.9    7.4   0.3    2.6  2  DUF2555     Protein of unknown function (DUF2555)


Domain annotation for each model (and alignments):
>> DDOST_48kD  Oligosaccharyltransferase 48 kDa subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  406.4   7.2  1.4e-125  1.2e-121       1     413 [.      35     443 ..      35     445 .. 0.92

  Alignments for each domain:
  == domain 1  score: 406.4 bits;  conditional E-value: 1.4e-125
  DDOST_48kD   1 vLvvldsea.ekeeyskflksLeergfeltfksakdeslsLfkygerkYdhlillapkvkelgksltpkallefvnkg.gniLvalsssklpesirsll 97 
                 +Lv++d++  + ++yskf++sL++r+f+l+f+++++++ +L ++  +kY++li++++k k+++++l++++ll+f++++ gniL++++++ +p+s+r +l
  CCD22979.1  35 TLVLYDDRLiDLDDYSKFFESLKDRSFQLQFQDLSSKQSQLDSNWIEKYNNLIIFPIKGKHINRQLSVDSLLNFYENKiGNILTMTTPDGVPDSVRLFL 133
                 79*******9*****************************************************************9988******99988********* PP

  DDOST_48kD  98 selgielsergskvvDhfnydsesdaekhdvlllsspeellakvknifsekkkeeevlf..rgvgallgnnplllpiLrapstsysydpkeeeesaeea 194
                 ++lgi++s++g++++D+f+++s+s++ + + l+++s++ l+  +++i+++   +e++ f  r + a+l+n++l++p+Lr+++ts+ + p +      ++
  CCD22979.1 134 NQLGIYPSPKGQALTDYFQASSSSSS-S-SNLVIPSSN-LALTNNYIYQD--YNEQFQFgsRVSVAILDNRDLIIPVLRSTRTSFDKGPMK------TS 221
                 *******************9875554.3.346777766.55555567775..4555555559************************99977......67 PP

  DDOST_48kD 195 favGsqlslvaalQarnnaRvvfvGslellsdeffdakvkkkeksgnrefakdltkWtfqekgvlrvksvehhkeeeeeenpeiYrikdevtYsielse 293
                 ++ Gsq +l++++Q+++n R+ ++Gs+e+l+d++fd+       ++n++++k+ltkWtf+ek+++++ s+ h ++++ ++++ +Y+++de++++++l+e
  CCD22979.1 222 WSNGSQNYLIVSFQNLQNNRLSWIGSIEFLNDSNFDM-------ESNESLIKELTKWTFNEKSIVKIASLGHAHSNGISYDDLKYKVNDEIIFNLTLTE 313
                 99*********************************77.......99***************************9999********************** PP

  DDOST_48kD 294 ysndk..wvPfeaddlqLefvmLdPyirltLkpkk....sse..datvYstk.fklPDrhGvFkFkvdYkRpgltyieekttvsvrhlahdeypR..fi 381
                 +++++  w+Pf add+qLe++++dPy+rl+Lk+++    + +  + ++Yst  fklP rhGvF+F v+Y+R+gl++ + ++++s+rhla+deypR  +i
  CCD22979.1 314 WDDHQqkWTPFLADDIQLELKQVDPYYRLNLKKDEmvvfN-DnvSGQLYSTGpFKLPTRHGVFTFSVEYERSGLSFFKVEDVKSIRHLANDEYPRswEI 411
                 *876445**************************9977652.14699***************************************************** PP

  DDOST_48kD 382 ssAwpYyasafsvvvgfllFvalflyskeekk 413
                 ++Aw+Y++s++sv+ ++++F++ fl+++++++
  CCD22979.1 412 TNAWVYLTSIYSVIGAWIIFIITFLTTSSSSP 443
                 *************************9988765 PP

>> DUF2555  Protein of unknown function (DUF2555)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3   0.00044       3.9      20      33 ..      45      58 ..      40      71 .. 0.81
   2 ?    3.1   0.0    0.0096        86      10      40 ..     392     421 ..     385     423 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00044
     DUF2555 20 eeddYenpFegLkD 33
                + ddY++ Fe+LkD
  CCD22979.1 45 DLDDYSKFFESLKD 58
                67***********9 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0096
     DUF2555  10 edvaeLAerLeeddYenpFegLkDWhlLRai 40 
                 edv+++ + L +d+Y+   e  + W  L +i
  CCD22979.1 392 EDVKSI-RHLANDEYPRSWEITNAWVYLTSI 421
                 666665.6799**************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       981  (0.0547158); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3638.20
//
Query:       CCD22980.1  [L=254]
Description: hypothetical protein NDAI_0A08270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.2   0.1       0.23   11.3   0.1    1.4  1  T6PP_N    Trehalose-6-phosphate phosphatase N-terminal helica


Domain annotation for each model (and alignments):
>> T6PP_N  Trehalose-6-phosphate phosphatase N-terminal helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.3e-05      0.23      60      97 ..      41      86 ..       8      89 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.3e-05
      T6PP_N 60 t......eeekvrldikdEiee.LekD.lkFLefiqsdevenveqf 97
                +      ++++++l+i++Ei+e L+ D  +FLef++++  +   +f
  CCD22980.1 41 QevvppsQQNTINLNITYEINErLDADkSEFLEFYNDELATLNYTF 86
                1344444689**********9879998457****998866655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2091.73
//
Query:       CCD22981.1  [L=741]
Description: hypothetical protein NDAI_0A08280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.9e-146  486.7   1.3   9.2e-146  485.8   1.3    1.4  1  GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family
  ------ inclusion threshold ------
       0.27   11.6   1.2       0.66   10.4   1.2    1.7  1  SRP9-21    Signal recognition particle 9 kDa protein (SRP9)


Domain annotation for each model (and alignments):
>> GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  485.8   1.3    1e-149  9.2e-146       3     416 ..       4     463 ..       2     479 .. 0.95

  Alignments for each domain:
  == domain 1  score: 485.8 bits;  conditional E-value: 1e-149
   GDA1_CD39   3 aekenekygiviDAGSsgsrlhvykwkde........kesllqivkliee....vkklePGlSsfekkp.eeaaeylkpllelaeeviPeekrsetpvl 88 
                  e+ n++ygiviDAGSsgsrlh+ykw+d         + s+lq+v++i++     +k++PGlSsfe+kp +++++++kpll+ a+++iP++k++etp++
  CCD22981.1   4 NEDANDRYGIVIDAGSSGSRLHIYKWTDPnsltattnDPSILQSVPQIYQrrdwNHKITPGLSSFENKPhKAYKDHIKPLLDHAKKIIPTNKQKETPIF 102
                 6789**********************9889999*99999***********999999*************999*************************** PP

   GDA1_CD39  89 ikATAGlRLlkeekkekilkalrnklkkl.sefkved...qgiriidGeeEGiYgWiaiNYllGkfnkeapevskqetvgvlDlGGaStQiafepqees 183
                 i+ATAG+RLl+  k++ki+++l++++k++ s+f +++   q+i++idGe+EGiYgW+++NYl G+fn+ +p+ s+++t+g++D+GGaStQiaf p++  
  CCD22981.1 103 IQATAGMRLLPTRKQSKIIESLCKQIKQKsSNFLMQNdcsQQIQVIDGETEGIYGWLSLNYLSGHFNNFNPQDSSHFTFGFMDMGGASTQIAFMPSDPK 201
                 ***********************998765167888777899********************************************************** PP

   GDA1_CD39 184 eiaekvedie.elklqekledkkyklyvtsfLgyGanealrkklaklikkasee............vlkdpClprglektvevkdlefkqfaikgtgny 269
                 eia++ +di+     + + + ++++++v+++Lg+Gan+a++++l +li++++e+            +l dpC+p g+e ++++k     +f+  g+gny
  CCD22981.1 202 EIATHHDDINsVILKSNNGDVQQWDVFVSTWLGFGANQARKRYLIQLINSLPENtndyddddfhtkKLLDPCMPTGYEYKFKYKGE---KFKFIGSGNY 297
                 **********555666777889*************************************************************998...6999****** PP

   GDA1_CD39 270 eqCrksikellnknakCkaeeClfngvfapsidl.lqklfgaseyfYtvsdvlklggekvklekltealrkfCkknweeikaeskkskeksisee...e 364
                 +qC+ksi++ll kn +C++e+Clfngv++p+id+  +k++g sey+Yt++d++klgg++ +++++  ++++fC+ +we++k++  + k++ i++e    
  CCD22981.1 298 DQCTKSIYPLLLKNLPCEDEPCLFNGVHTPKIDYdVDKFIGISEYWYTANDIFKLGGTY-NFKEFDSNVKQFCELDWETMKKNNVNGKYNDIPDEflaA 395
                 **********************************9************************.*************************************99 PP

   GDA1_CD39 365 aCfkgayvlslLhdGfdldktv................eelqsvekiaekelgWtLGamlnllkalkl 416
                  Cfk+++vl++Lh+Gf+l+k+                 + +qs+ek++ekel+WtLG++l +++ + +
  CCD22981.1 396 SCFKANWVLNVLHEGFNLPKIDnndikssieekqnelpPMFQSLEKVDEKELSWTLGRILLYASGSVM 463
                 ********************9559*************99***********************998765 PP

>> SRP9-21  Signal recognition particle 9 kDa protein (SRP9)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.2   7.4e-05      0.66      32      84 ..     598     650 ..     588     669 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.4e-05
     SRP9-21  32 akkkkkkkkkkkaksekkaskaspprgtltlKtydpvsGvclkYkTnkaaevs 84 
                 ++++++++++++++s   +s+++  +++l+ K+y++ +G  l+++ ++a +++
  CCD22981.1 598 NNNNNNNNNNNNNSSFIPKSEHERRTKNLVNKVYNEDQGELLNFRSKSASNLT 650
                 222222222333333333444449999*******************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1259  (0.0702214); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 5232.04
//
Query:       CCD22982.1  [L=533]
Description: hypothetical protein NDAI_0A08290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-23   81.7  16.4      8e-23   80.3  16.4    1.8  1  GN3L_Grn1    GNL3L/Grn1 putative GTPase
    4.1e-18   65.5   0.1    1.1e-13   51.2   0.0    2.6  2  MMR_HSR1     50S ribosome-binding GTPase
    4.6e-09   36.0   0.2    9.2e-08   31.8   0.1    2.3  2  FeoB_N       Ferrous iron transport protein B
      2e-06   28.0   3.7      0.066   13.3   0.9    3.6  3  Dynamin_N    Dynamin family
    9.2e-06   25.7   0.3    0.00046   20.1   0.3    2.4  1  RsgA_GTPase  RsgA GTPase
    0.00044   19.6   0.1     0.0019   17.6   0.0    2.1  2  AIG1         AIG1 family
    0.00051   19.6   0.0       0.15   11.5   0.0    2.7  2  GTP_EFTU     Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.031   13.2   0.0      0.065   12.2   0.0    1.5  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
      0.043   14.0   0.9        3.1    8.0   0.0    3.1  3  Roc          Ras of Complex, Roc, domain of DAPkinase
      0.092   13.3   0.6       0.58   10.7   0.0    2.6  3  AAA_18       AAA domain
       0.17   12.0   0.1       0.38   10.9   0.1    1.5  1  Torsin       Torsin
        1.3    9.4   4.3        3.9    7.8   0.1    2.7  2  AAA_16       AAA ATPase domain


Domain annotation for each model (and alignments):
>> GN3L_Grn1  GNL3L/Grn1 putative GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3  16.4   5.4e-26     8e-23       1      75 [.      14      88 ..      14      89 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 5.4e-26
                .HHHHHHHHHHHHHHHHHHHTT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   GN3L_Grn1  1 rkrykiekkvkehnrKerKeakknptwkskkkkdpgIPnsfPfKeeiLeeieekkrkkeeekekkkeakkeekek 75
                r+r+ i+kk+++++rKerK+ak +ptwks+ kkdpgIP++fP+K +iLeeie+kk k+ eek+ +k+++  +k++
  CCD22982.1 14 RMREGIKKKANAQHRKERKKAKTDPTWKSRGKKDPGIPANFPYKAKILEEIEAKKLKDLEEKQLQKQQRLLAKQE 88
                79******************************************************************9888775 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00013      0.19      62     114 .]     171     224 ..     114     224 .. 0.72
   2 !   51.2   0.0   7.4e-17   1.1e-13       2      68 ..     293     366 ..     292     418 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHHHC.TSEEEEEEETT..TTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  62 eekglgkaflalee.adlillvvdas..eeklkpldeeleelleeakkplilvlnk 114
                 ++k   k f+++++ +d+il+v+da+  e   ++ ++  +++l++++k+lil+lnk
  CCD22982.1 171 SRKAYDKIFKSVIDaSDVILYVLDARdpE--GTRSRKVEQAVLQSQGKRLILILNK 224
                 2335566666777856********99642..23333444445555789******98 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 7.4e-17
                 EEEEESTTSSHHHHHHHHHT......STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS...SHHHHHH..HHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg......ekaivsdkpgtTrdinegrvklkgkeielvDtpGli...egaseek..glgk 68 
                 v+++G+pNvGKS++ina+t       +++ v++++g+T+  +e +v+   ++++++D pG+    e  s++k   + +
  CCD22982.1 293 VGVIGYPNVGKSSVINAITArrgshtKACPVGNQAGVTTSLREVKVD---NKLKILDSPGICfpsE-TSTKKskVEHE 366
                 89*****************7444432367*****************8...69********635432.22222111222 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.11   1.6e+02      77     118 ..     184     228 ..     170     243 .. 0.77
   2 !   31.8   0.1   6.2e-11   9.2e-08       2      64 ..     292     357 ..     291     381 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.11
                 TSSSEEEEEEEGGGHH..HHHHHHHHHHH.TTSSEEEEEETHHHH CS
      FeoB_N  77 eepdvvvnvvdatnle..rnLyLtlqlle.lgvpvvlalnmidea 118
                 +  dv++ v+da   e  r+  +   +l+  g++++l+ln++d +
  CCD22982.1 184 DASDVILYVLDARDPEgtRSRKVEQAVLQsQGKRLILILNKVDLV 228
                 56799999999998874455555555554156999999**99976 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 6.2e-11
                 EEEEEESTTSSHHHHHHHHHTTS...EE...EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak...qk...vgNwpGvtvekkegklklkgkeveivDlPGiYslsays 64 
                  v ++G pnvGk++++na+t  +   +k   vgN +Gvt   +e+k++   ++++i+D PGi   s++s
  CCD22982.1 292 VVGVIGYPNVGKSSVINAITARRgshTKacpVGNQAGVTTSLREVKVD---NKLKILDSPGICFPSETS 357
                 5789***************965422132455**************999...99********96544444 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.9   4.4e-05     0.066     102     168 .]     151     225 ..       7     225 .. 0.78
   2 !   11.4   0.0   0.00016      0.24       1      26 [.     293     318 ..     293     327 .. 0.82
   3 ?    1.4   0.0      0.19   2.9e+02     100     136 ..     339     391 ..     328     408 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.4e-05
                 SEEEEE---B-SSSGTTS...........HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE-C CS
   Dynamin_N 102 gltlvDlPGldsvnkrdq...........elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvltkl 168
                 ++   D  G ++ +++ +           ++ k+ i+ +d+il+v++a     +  ++  +  ++++gkr i +l+k+
  CCD22982.1 151 DI---DFYGSNDDDDEGEseleksrkaydKIFKSVIDASDVILYVLDARDPEGTRSRKVEQAVLQSQGKRLILILNKV 225
                 44...6677777666666777888888889999999*************988866655556667889999******96 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00016
                 EEEEEBTTTTHHHHHHHHHTS--S-- CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilpr 26 
                 + v+G  + GKSSv+na++ ++  ++
  CCD22982.1 293 VGVIGYPNVGKSSVINAITARRGSHT 318
                 689***************98875555 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.19
                 S-SEEEEE---B-SSSGTTS...............HHHHHHH.STTEEEEEEE CS
   Dynamin_N 100 vkgltlvDlPGldsvnkrdq...............elvkeyi.kkadiilavt 136
                 +++l+++D+PG+    +  +               +l  +yi ++  ++l+++
  CCD22982.1 339 DNKLKILDSPGICFPSETSTkkskveheaeltllnALPSKYIvDPYPAVLMLV 391
                 67899******977666666566666667666666666666666666666655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.3   3.1e-07   0.00046      44     161 ..     213     350 ..     178     354 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.1e-07
                  HTT-EEEEEEE-GGG--HHH.....................HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT...SEEE...EECSTTSSHHH CS
  RsgA_GTPase  44 ekgiepvivlnKiDlleeee.....................eleelkeelealgyevllvsaktkegleelkellkd...ktsv...lvGqSGvGKSt 114
                  ++g +++++lnK+Dl+                              +++ ++++ +++   ++ ++ le+lk++ ++   k s+   ++G   vGKS+
   CCD22982.1 213 SQGKRLILILNKVDLVPPYVleqwlnvlkssfptiplraspG----ATNGTSFNKKLTQ-TVTASALLEALKTYSHNsnlKRSIvvgVIGYPNVGKSS 305
                  555566667777777666554455555555555554422221....2222222222211.122233344444433332234444002556666***** PP

                  HHHHHCTT-----S--------------SEEEEEETTTEEEESS-SS CS
  RsgA_GTPase 115 LinallpelelktgevseklgrGkhTTtavellelaegglliDtPGf 161
                  +ina++ +   +t++    ++ G   Tt+ + ++++++  + D+PG+
   CCD22982.1 306 VINAITARRGSHTKACPVGNQAGV--TTSLREVKVDNKLKILDSPGI 350
                  ******************999997..556667899999********8 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   1.8e+03      82     106 ..     184     209 ..     165     240 .. 0.53
   2 !   17.6   0.0   1.3e-06    0.0019       5     103 ..     295     401 ..     289     409 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
                 T-ESEEEEEEETT.B-SHHHHHHHHH CS
        AIG1  82 egihalllvlslg.rfteedekalkt 106
                 +  +++l+vl+++    ++ +k+ ++
  CCD22982.1 184 DASDVILYVLDARdPEGTRSRKVEQA 209
                 45567777777762222233333333 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.3e-06
                 EESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEE.EETTEEEEEEE--SC.CCTTC..CHHCHHHHHHHHHHHCTT-ESEEE....EE.EETT CS
        AIG1   5 lvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksr.twdgkkinViDTPgl.fdlsv..sadkiskeivrclllseegihall....lv.lslg 94 
                 ++G   +GkS+ +N+i  ++  ++k++  +    ++++ r ++ ++k+++ D Pg+ f +++  +++k+++e     ll++ +   ++     v + ++
  CCD22982.1 295 VIGYPNVGKSSVINAITARRGSHTKACPVGNQAGVTTSLReVKVDNKLKILDSPGIcFPSETstKKSKVEHEAEL-TLLNALPSKYIVdpypAVlMLVK 392
                 678889**************9999998888888888888868889***********5444441145555555443.34444445555556664414445 PP

                 B-SHHHHHH CS
        AIG1  95 rfteedeka 103
                 r++++de++
  CCD22982.1 393 RLSQNDEMT 401
                 777777665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0    0.0001      0.15      92     145 ..     184     239 ..     174     280 .. 0.71
   2 !    5.1   0.0    0.0097        15       2      33 ..     289     320 ..     288     364 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
                 HT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTE.EEEEEESCGST.HHHHHHHHHH CS
    GTP_EFTU  92 rvlDgavlvvdaveGvepqteevlrlalkegvp.iivfiNKmDrl.kaelkeivee 145
                  + D+ + v+da++   +++++v + +l+ + + +i+++NK+D +    l++  + 
  CCD22982.1 184 DASDVILYVLDARDPEGTRSRKVEQAVLQSQGKrLILILNKVDLVpPYVLEQWLNV 239
                 6789*********999999999998888777666**********973333333333 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0097
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHH CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskk 33 
                 r + +g+ig  + GK++++ +++++ g  +k+
  CCD22982.1 289 RSIVVGVIGYPNVGKSSVINAITARRGSHTKA 320
                 56789******************998886663 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.3e-05     0.065      25      51 ..     286     312 ..     262     322 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.3e-05
                 G-S-SEEEEEEE-TTSSHHHHHHHHHH CS
        MeaB  25 kaGraqvvGltGvPGaGkstlvealgl 51 
                 +  r+ vvG+ G P +Gks +++a+++
  CCD22982.1 286 NLKRSIVVGVIGYPNVGKSSVINAITA 312
                 3357889****************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.072   1.1e+02      69     119 ..     175     226 ..     171     227 .. 0.79
   2 ?    8.0   0.0    0.0021       3.1       4      53 ..     295     342 ..     292     349 .. 0.78
   3 ?   -2.2   0.1       3.1   4.6e+03      22      42 ..     474     494 ..     469     508 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.072
                 TTTT-HHHHCTSCEEEEEEEGHHHH.CHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  69 frslhplylreaalailvydsrsse.nlkeWlkelkkvagkspvilvgnkiD 119
                 ++++ ++ + +++++++v+d+r+ e + ++ +++   +++ + +il+ nk+D
  CCD22982.1 175 YDKIFKSVIDASDVILYVLDARDPEgTRSRKVEQAVLQSQGKRLILILNKVD 226
                 5566677788999*******98765255678888888888999********9 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0021
                 EESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTT CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkv 53 
                 ++G  +vGK+s ++ ++ ++ s+++   +g +   ++  ++++v+ d+k+
  CCD22982.1 295 VIGYPNVGKSSVINAITARRGSHTKACPVGNQAGVTT--SLREVKVDNKL 342
                 89****************9999999988888876654..45666655544 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.1
                 -CCC-EEETTTTEEEEEEECG CS
         Roc  22 dkfsekekstigvdfltkevt 42 
                  + +e +++tig  +++  ++
  CCD22982.1 474 TELQEAQQQTIGTGISQAPAK 494
                 567889999999988776543 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.7   4.1e+03      72      81 ..     141     150 ..      81     202 .. 0.53
   2 ?   10.7   0.0   0.00039      0.58       1      45 [.     293     353 ..     293     395 .. 0.66
   3 ?   -2.2   0.0       3.8   5.6e+03      37      78 ..     460     501 ..     441     509 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.7
      AAA_18  72 eegknlvidg 81 
                 ++ +  v+d 
  CCD22982.1 141 TQDDLEVVDY 150
                 3333333333 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00039
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.............gvnlrdvakenglllevdpe...a 45 
                 +++ G+p vGK+++ +++  r g+              + lr+v  +n l + + p     
  CCD22982.1 293 VGVIGYPNVGKSSVINAITARRGShtkacpvgnqagvTTSLREVKVDNKLKILDSPGicfP 353
                 6899**************7776665666677777777555555555555555555554442 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.8
      AAA_18  37 lllevdpe.aldeskrldedkldklldaleenssaleegknlv 78 
                 +l +v p+    +s +l+e +++ + +++ +++++++e+ + +
  CCD22982.1 460 ILGWVLPNaSKTSSTELQEAQQQTIGTGISQAPAKEQEQTS-I 501
                 44445555444677788888888888888888774444444.4 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00025      0.38      29      74 ..     266     311 ..     257     320 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00025
                 S-HHHHHHHHHHHHHHHT-SS-SS-EEEEEEE-TTSSHHHHHHHHH CS
      Torsin  29 GqhlvkklvvksvkaylenekpkkpLvlsfhGwtGtGknfvaeiia 74 
                  q + ++ +++++k+y +n + k+++v+ + G++  Gk+ v + i 
  CCD22982.1 266 TQTVTASALLEALKTYSHNSNLKRSIVVGVIGYPNVGKSSVINAIT 311
                 58889999******************************99987765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.1      0.21   3.1e+02      63     148 ..      49     149 ..      26     161 .. 0.58
   2 ?    7.8   0.1    0.0026       3.9       9      47 ..     275     313 ..     266     342 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.21
      AAA_16  63 l.esaipysa.laqalareellrqlldeaesaeleawrekleeala.......avpelagaea...srllellkrll.allsrder....plvlvlDdl 144
                   +++ py a +++ +++++l   ++ +++++++  ++++ ++  a       + ++l+++++    +l e  ++++ ++  + +       v + Ddl
  CCD22982.1  49 GiPANFPYKAkILEEIEAKKLKDLEEKQLQKQQRLLAKQEALRL-AqmngqmvDESALPDDDEnglAALVESAQHAAqEYNNN-QGsgnnNSVSTQDDL 145
                 44667889777999997745444444444444444444433333.25777777444555554444466666666666444443.323443466666666 PP

      AAA_16 145 qwad 148
                 + +d
  CCD22982.1 146 EVVD 149
                 6555 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0026
      AAA_16   9 leqLlsalervrsgrpelvllsGesGvGKsslvrellra 47 
                 le+L+++ ++ +  r+ +v ++G++ vGKss+++++  +
  CCD22982.1 275 LEALKTYSHNSNLKRSIVVGVIGYPNVGKSSVINAITAR 313
                 344444444444445466779************999853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1530  (0.0853366); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.67u 0.23s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 3995.65
//
Query:       CCD22983.1  [L=181]
Description: hypothetical protein NDAI_0A08300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-27   94.2   0.7    1.5e-26   92.9   0.9    1.5  2  Pre-PUA   Pre-PUA-like domain
    3.2e-21   75.1   0.0    4.7e-21   74.5   0.0    1.3  1  PUA       PUA domain
    7.8e-05   22.9   1.0    0.00023   21.4   0.3    2.1  2  DUF1947   Domain of unknown function (DUF1947)


Domain annotation for each model (and alignments):
>> Pre-PUA  Pre-PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.9   2.6e-30   1.5e-26       4      87 .]       7      87 ..       5      87 .. 0.98
   2 ?   -3.3   0.0       2.6   1.5e+04      44      68 ..     153     176 ..     145     177 .. 0.60

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 2.6e-30
     Pre-PUA  4 kfkvksntqlksSdrrkLraklleqfpslseeqleellpkkeevkvvklqgehvelyvvdgeplffqdregellPtlytlwkyP 87
                k+++ s++++ksS++r+L+akl++q+p+l e++++el+pkk++++++k++ ++++ly+vdge+lffq+  +el+Ptl++++++P
  CCD22983.1  7 KEDIHSRSKVKSSVQRTLKAKLTSQYPKL-EDVIDELIPKKSQIELIKCE-DKIQLYTVDGEVLFFQK-FDELIPTLRLVHRFP 87
                799**************************.********************.*****************.99************9 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.6
     Pre-PUA  44 keevkvvklqgehvelyvvdgeplf 68 
                  e++k +    + ve++ + g+pl+
  CCD22983.1 153 TEDIKSINKG-HGVEMIHHLGDPLW 176
                 4455555444.66777777777776 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.0   7.9e-25   4.7e-21       1      74 []      91     171 ..      91     171 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 7.9e-25
                 CEEEE-HHHHHHHHTT-EEEGGGEEEEETT-......-TTSEEEEEETT.SCEEEEEEESS-HHHHHHHCTSEEEEEEEEE CS
         PUA   1 grvvvddgAvkallsgasLlapGvvevegdf......eegdvVaivded.gelvavGlanysseelakikggksveiervl 74 
                 ++v+vd+gA+k++lsga++++pG+++ + ++      e++ +V+i +e+ + ++a+G+ ++s+e++++i++g++ve++++l
  CCD22983.1  91 PTVQVDRGAIKFVLSGANIMCPGLTSPGAKLpdapgfEKDSIVVITAENkDSALAIGKLLMSTEDIKSINKGHGVEMIHHL 171
                 68****************************9999999***********98*****************************97 PP

>> DUF1947  Domain of unknown function (DUF1947)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.3   3.9e-08   0.00023      24      64 ..      43      84 ..      21      86 .. 0.82
   2 ?   -1.2   0.0      0.43   2.6e+03      26      51 ..     127     153 ..     126     158 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3.9e-08
                -TT--..-EEEE.-SS-EEEEETTEEEEEE.SSSEEE-HHHHH CS
     DUF1947 24 islesdkiEiee.ekkeklYlingvpilfe.eekliPtLklLl 64
                i+ +s+ iE+ + e+k  lY ++g  ++f+  ++liPtL+l+ 
  CCD22983.1 43 IPKKSQ-IELIKcEDKIQLYTVDGEVLFFQkFDELIPTLRLVH 84
                566676.9965526799**********************9986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.43
                 T--...-EEEE-SS-EEEEETTEEEEE CS
     DUF1947  26 lesdk.iEieeekkeklYlingvpilf 51 
                 +e+d+ + i +e k +++ i++ ++  
  CCD22983.1 127 FEKDSiVVITAENKDSALAIGKLLMST 153
                 567777778888999999999888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1364.64
//
Query:       CCD22984.1  [L=1383]
Description: hypothetical protein NDAI_0A08310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.1e-150  502.4  28.6   2.1e-150  502.4  28.6    2.4  3  Sec3_C          Exocyst complex component Sec3
    2.8e-28   97.8   0.7    2.8e-28   97.8   0.7    2.3  2  Sec3-PIP2_bind  Exocyst complex component SEC3 N-terminal PIP
    2.1e-08   33.4   2.0    4.1e-08   32.4   2.0    1.4  1  Vps52           Vps52 / Sac2 family


Domain annotation for each model (and alignments):
>> Sec3_C  Exocyst complex component Sec3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.2   6.6         3   1.8e+04     263     312 ..      19      70 ..       3      86 .. 0.36
   2 ?   -4.4   3.3      0.76   4.5e+03     263     321 ..     436     506 ..     401     515 .. 0.48
   3 !  502.4  28.6  3.5e-154  2.1e-150       2     699 ..     686    1363 ..     684    1364 .. 0.97

  Alignments for each domain:
  == domain 1  score: -9.2 bits;  conditional E-value: 3
      Sec3_C 263 gseeseslssssseekkteglalrksrkltlkssktganls..............ekaaqkkts 312
                 ++e+s+s +            a ++s++ +l++ + g++ s              +    k+t 
  CCD22984.1  19 QDENSNSIFHRR--------SASNSSNSKRLSYQQHGRSISgsnvappisasnpsH----KRTT 70 
                 222222222222........223334444444444443333444444444432211....2222 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 0.76
      Sec3_C 263 gseeseslssssseekkteglalrksrkltlkssktganls.........ekaaq....kktsgrlkpdeaf 321
                 ++++s sl ss  +++++++ ++++++  + ++s t++n+s         ++a +    ++++++ +  e +
  CCD22984.1 436 KKTTSPSLTSSTHSSEQNSTGTYTAENPPNHQYSGTTRNASdlnlshvdtQQA-NsvssSNNNKNGNALENL 506
                 22222233333333444444555566666666666666655666766654222.233224444444444444 PP

  == domain 3  score: 502.4 bits;  conditional E-value: 3.5e-154
      Sec3_C    2 dadeleerLsreLskleaanikrllesdkkveelkkdidkalkecdeldalltlysveLstlsedieyIEsqnngLQvksaNqklLykeLeellstv 98  
                  dad+l+e L+ ++++++ +++k +++++k   +l ++i++++ ecd++++ ltl+ +e++++ ediey+E+q+ngLQv+ aN+klL+++L+ell+tv
  CCD22984.1  686 DADKLIEHLDLKIAETQHTFNKGIVTLEKMGPSLEPYITNVNRECDKMNPSLTLFLMEMNNFAEDIEYVENQDNGLQVEYANKKLLWNTLSELLNTV 782 
                  69*********************************************************************************************** PP

      Sec3_C   99 slsesdleaLkeaelssanglealeealeaLfkAltaIdsdlk..dlesdlgemravkerrerYekvsssFlrrlveflekkfksaekelgkdldsa 193 
                  sl+e++l++L +++++++n l+++  +l++L+kAl+aI +d +  +++ +l++m+a+k+rr+ Ye+v++ Fl+r+v++   kf+s            
  CCD22984.1  783 SLDEDTLKELLKCPIRERN-LPWMDIQLNSLSKALKAISGDNEssEEDYNLRDMEALKQRRQYYERVKDLFLERVVQEFGTKFESV----------- 867 
                  *******************.********************999999*************************************766........... PP

      Sec3_C  194 tkkklslekhlevlnlLliYsgLilflKevdaekfeallqqYnasiskvYereikeffeslkkslkkssgseeseslssssseekkteglalrksrk 290 
                  +++++s+++++++l++Ll +s+++lf+Ke + +++++l++ +n+si++vY + +++ + +l+   +   +  + +s +++++ +   ++  ++ ++k
  CCD22984.1  868 QTGDTSTDQLNSILSRLLAFSSIVLFCKETSIASYKDLIKLWNKSIETVYLNLWEKMLFQLNHPEE---EIGKVSSNNQQGEARLLRSWKNYQETKK 961 
                  35589*********************************************************9999...6666788889999999999999999999 PP

      Sec3_C  291 ltlkssktganlsekaaqkktsgrlkpdeafaevLdeleplilveQnFiidfFhlssletldfnefvkqsapserrakdlsrsknvesdrelarkve 387 
                  l   ++ +                 k  + ++ +L+ le+ ++++QnFi++fFh+ss  tldf+ +vk ++   +r + l+ +++++sdr +a+ + 
  CCD22984.1  962 LVPVEPLSS----------------KLLSGLVDALEILEQNCIIYQNFIDKFFHISS--TLDFEHYVKEYNDYPTRIIALDYIDKMDSDRHIATTKL 1040
                  999999999................8999****************************..8************99999******************** PP

      Sec3_C  388 klmeaifqflekelvnlvekvlkvdplqalgilvyleqkikeleesnqsflssvlqkllekvkslfkkfvdeqvesieetkvkvkkrkgvlpfvrnf 484 
                  ++++++fq++  ++++++ + lk++p  al +++ le+k+k l++sn +fl ++++k+++++++ + ++vd+q+  +e++ v+  +r ++ p+v  +
  CCD22984.1 1041 QMVSEVFQPILINFLSFIVDSLKNEPSLALSLMILLEEKMKRLQSSNLEFLIDAMNKIYTQIRQFWLEYVDDQLVYLERSAVNSSNR-DISPSVLDL 1136
                  **************************************************************************************9.********* PP

      Sec3_C  485 pefvkavEsmlssaera........lavrtlvdqaYeklieavfelLkreakeekaksvadeee.dkeklnrhvllleNmnhfleeLselkn..sev 570 
                  p+f+k+v +++s  ++a        l++++++ +++++l+ ++++ L+++++ +    + +++  ++ +ln+ + ll N+ +++e+  +l+   s++
  CCD22984.1 1137 PIFIKNVYDSVSFVQDAvqvedatsLESIEILMSSCSRLTITLTQFLTKSDDGSGIALGLQNPTlKSDDLNESIELLMNSDWVVEMFTMLNVgmSNI 1233
                  ***************999*******99************************999999866665516678**************************** PP

      Sec3_C  571 leelrdeakqlfdeelelYvdavlrrplgkLieFvegveellqt..kkaaeissqaaySkqalkkilskYtakeirkgieklykrvekhfledadra 665 
                  +e   ++ak++fd e+e+Y+d +lr++++kL++Fv g+ + +++  ++ +++s +aaySk++l+ il++Yt++ei+ ++ +l+k++ ++f+++++ +
  CCD22984.1 1234 FEIPVQNAKKIFDVEKEAYADYLLRDSMPKLTSFVMGAMRVIEKsfEQRSNPSTWAAYSKHNLEMILKSYTSQEINLLVRRLHKHLVNDFSNGQN-E 1329
                  ******************************************************************************************55555.6 PP

      Sec3_C  666 vleeeLlqkvwseleeefiskylrlekiiqkvYd 699 
                  v +e L+qk+ws+l+++++s yl+l+++i+k Y+
  CCD22984.1 1330 VVREVLCQKLWSCLQGQTVSLYLKLYTLIDKNYK 1363
                  7********************************7 PP

>> Sec3-PIP2_bind  Exocyst complex component SEC3 N-terminal PIP2 binding PH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.7   4.8e-32   2.8e-28       1      90 []     138     224 ..     138     224 .. 0.96
   2 ?   -2.2   0.2      0.77   4.6e+03      16      41 ..     639     665 ..     632     666 .. 0.81

  Alignments for each domain:
  == domain 1  score: 97.8 bits;  conditional E-value: 4.8e-32
  Sec3-PIP2_bind   1 kkkprfLclsvtksgrkevrlhkvKensngssfsigktWkLkeLklvegrdpdkddpeFdltfdkpykweaesskeknaFirsLvklykk 90 
                     +kk+r+L++s + ++ +ev+lhk++en++gs f+ig+tW+LkeL ++e++++ ++   F+lt++k+y+we++sske+++F++sLvk+y++
      CCD22984.1 138 NKKKRVLIISSKANKPNEVQLHKARENQDGS-FQIGRTWNLKELLKIERDTQVPE--GFLLTMGKVYYWETNSSKERTVFVKSLVKIYMQ 224
                     69************55**************9.*****************999985..7******************************85 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.77
  Sec3-PIP2_bind  16 r.kevrlhkvKensngssfsigktWkL 41 
                     + ++ +l+ + ++++g+ + ++k+W+ 
      CCD22984.1 639 QqQQQQLQPMEQEQSGTPMMKRKKWDV 665
                     446789999999999999999999*86 PP

>> Vps52  Vps52 / Sac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   2.0   6.8e-12   4.1e-08      23     211 ..     723     925 ..     715     938 .. 0.82

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 6.8e-12
       Vps52  23 iaaidsvleqledlLeeFqsdlssissdikklqekSnelqlrLenrkaveaklsklvddlivppelidvIiegkvne...esiaekleilnkkksa.ek 117
                 i++++   +++  +L+ F  ++++ + di+ ++++ n lq++  n+k     ls+l++ + + ++ ++ +++ ++ e   + +  +l+ l k ++a   
  CCD22984.1 723 ITNVNRECDKMNPSLTLFLMEMNNFAEDIEYVENQDNGLQVEYANKKLLWNTLSELLNTVSLDEDTLKELLKCPIRErnlPWMDIQLNSLSKALKAiSG 821
                 566677778999*****************************************************************8883444444444433322022 PP

       Vps52 118 dqs.......vkslkalkDvkklldkLrnkalekireyivqkiktlRkpkvnvqiiqn...kLlkvkkifeFllennrklalelrqaYidTmkkiyley 206
                 d++        ++++alk  ++  ++ ++  le++ +    k  +     + + ++     +Ll+   i  F +e   +  ++l + + + ++ +yl+ 
  CCD22984.1 822 DNEsseedynLRDMEALKQRRQYYERVKDLFLERVVQEFGTKFESVQTGDTSTDQLNSilsRLLAFSSIVLFCKETSIASYKDLIKLWNKSIETVYLNL 920
                 222344555599**********************99999999999998876554443333399************999999999999999999999988 PP

       Vps52 207 frsYi 211
                 +++  
  CCD22984.1 921 WEKML 925
                 87755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1394  (0.0777511); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.26s 00:00:01.19 Elapsed: 00:00:00.45
# Mc/sec: 9202.02
//
Query:       CCD22985.1  [L=125]
Description: hypothetical protein NDAI_0A08320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-36  125.1   0.5    2.5e-36  124.9   0.5    1.0  1  NTF2      Nuclear transport factor 2 (NTF2) domain
      0.002   17.3   0.5      0.014   14.6   0.5    1.9  1  DUF4518   Domain of unknown function (DUF4518)


Domain annotation for each model (and alignments):
>> NTF2  Nuclear transport factor 2 (NTF2) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.5   2.7e-40   2.5e-36       2     120 .]       9     121 ..       8     121 .. 0.98

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 2.7e-40
                 HHHHHHHHHHHHHHHGGGGGGGGEEEEEEEEEETTEEEEESHHHHHHHHHHSSCSCEEEEEEEEEEEETSEGGGCEEEEEEEEEEEETTSCCEEEEEEE CS
        NTF2   2 akafvqqYYaaldagdregllalyaadaslltpegsspvkgreaIteffrslpftrielkittvdaqpdeaslstgvlvmvtGelkvddfkkrrkfsqt 100
                 a++f++ YY+ +d+ dr +l++ly ++ s+lt+e s +++g+++I+e++ slpf+++ ++itt+daqp  as++++vlvm+tG+l  dd++++++fsq+
  CCD22985.1   9 AQQFTEFYYNQFDT-DRTQLGNLY-REQSMLTFETS-QLQGAKDIVEKLVSLPFQKVAHRITTLDAQP--ASSNGDVLVMITGDLLIDDEQNPQRFSQV 102
                 899***********.9999*****.***********.******************************8..899******************99****** PP

                 EEEEEETTTEEEEEEEEEEE CS
        NTF2 101 filapqsnkgyfvlnDifrl 120
                 f+l p++ ++y+v+nDifrl
  CCD22985.1 103 FHLIPEG-NSYYVFNDIFRL 121
                 ******9.9*********96 PP

>> DUF4518  Domain of unknown function (DUF4518)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.5   1.6e-06     0.014     131     252 ..       4     106 ..       2     113 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.6e-06
     DUF4518 131 elellaeeFtkWFfellnsqnpslgqskedlgpqhFwedaklklllsasseeqveevegaeevserLlslvkeeslllnPnleseGvkgrisphGlVlv 229
                 + + la++Ft++++++++ ++++lg+         ++++ ++  +       ++ +++ga++++e+L+sl +++       l++      +s++G Vlv
  CCD22985.1   4 DFNGLAQQFTEFYYNQFDTDRTQLGN---------LYREQSMLTF-------ETSQLQGAKDIVEKLVSLPFQKVAHRITTLDA----QPASSNGDVLV 82 
                 56789**************7777777.........8887776655.......56799*****************9999999998....58999****** PP

     DUF4518 230 lvaGtihr.ensclGiFEqifgLi 252
                 ++ G +   +++    F q+f Li
  CCD22985.1  83 MITGDLLIdDEQNPQRFSQVFHLI 106
                 ****99852558889999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 911.23
//
Query:       CCD22986.1  [L=238]
Description: hypothetical protein NDAI_0A08330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-26   93.3   0.0      2e-26   93.0   0.0    1.1  1  RraA-like  Aldolase/RraA


Domain annotation for each model (and alignments):
>> RraA-like  Aldolase/RraA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   1.1e-30     2e-26       1     149 [.      16     186 ..      16     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 1.1e-30
                 HHHHHHH.CEE-SSBSTB.TT..EE.S.....EEEEEEEEEESS..BGHHHHHHHTS--TTEEEEE..........ESTT.SSSSSECE-HHHHHHHHH CS
   RraA-like   1 tadvsDa.lkklggrsggirp.ler.s.....fvGpavTvkvvea.dnslvkealeeagpgdvlVv..........dgggdeslraallGgllataaka 80 
                 t+d++Da l+ ++++ g++ p l+r s     +vGp+ Tv +v+  d +   + +++ +pg+vl++              + ++++a++Ggl++++a++
  CCD22986.1  16 TCDIADAlLNLYKIKGGSYIPnLTRqSaftepLVGPISTVLFVPIdDPRPAINYIDNLKPGSVLMLgfplefqlkyA--PYVTMSEAIYGGLMSKRAQY 112
                 8******8888889999899989995599**999********99955689999*******************99641..4456899999********** PP

                 TTBSEEEEEEEES-HHHHTTSSSEEEEEEE-SSB-B-S.STSEESS-EEETT.....EEE-TTSEEEEETTEEE CS
   RraA-like  81 ngvaGvvvdGavRDvaelreldfpvfargvtprkkpkkkgkgevnvpveigg.....vtvkpgdlivaDedGvv 149
                 +g++G++v+G++RDv+e+ +l+fpvf++gv++   + + ++  ++  ++i +     +  ++  ++++D++G+v
  CCD22986.1 113 QGCNGTIVFGRIRDVDEHIALKFPVFSYGVSACSANGRFKPILMDGLLKIVNfdnkpMELSSSGYVICDKNGAV 186
                 ******************************988544443333566666664422344669999*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1665.24
//
Query:       CCD22987.1  [L=1406]
Description: hypothetical protein NDAI_0A08340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-29  101.3   0.0    3.3e-14   52.7   0.0    3.3  3  EF-hand_4   Cytoskeletal-regulatory complex EF hand
    7.6e-07   29.5   0.0     0.0026   18.1   0.0    3.0  3  EF-hand_7   EF-hand domain pair
    1.2e-06   27.6   0.0     0.0018   17.7   0.0    3.6  3  EF-hand_1   EF hand
    5.4e-06   25.9   0.0      0.025   14.5   0.0    4.2  4  EF-hand_6   EF-hand domain
    0.00099   19.5  50.2     0.0038   17.6  11.1   10.3  8  DUF1720     Domain of unknown function (DUF1720)
     0.0023   17.7  20.3     0.0023   17.7  20.3    4.3  4  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   4.4e-15   1.3e-11       8      84 ..     290     365 ..     283     377 .. 0.88
   2 !   52.7   0.0   1.1e-17   3.3e-14       4      99 ..     570     664 ..     567     669 .. 0.91
   3 ?   -1.4   0.0      0.75   2.2e+03      20      53 ..     860     893 ..     857     903 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 4.4e-15
   EF-hand_4   8 eikkyweifsgl.kpednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvP 84 
                 +  k+  +f+++ kp +n+++g    ++l +s l+ ++l+kiw l+d  + gkl f ef++am+li d++ g+  ++P
  CCD22987.1 290 DQAKFETLFRSMvKPGSNTISGADCRTILMKSGLQPKQLAKIWALCDTSKAGKLLFPEFALAMHLINDVLQGD--SIP 365
                 56678888987439*******************************************************9985..455 PP

  == domain 2  score: 52.7 bits;  conditional E-value: 1.1e-17
   EF-hand_4   4 leeleikkyweifsglkped.nkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpeskahl 99 
                 + ++e+  +++if++ + e+  +l ++ +  ++++s l+ + le+iw+l+d+++ g+l  +ef++ m+l++  +ng+  ++P++lP  lvp+s + l
  CCD22987.1 570 ISDQEKSLFYKIFETYDTEKrGHLVSSTAVEIFRKSGLNRSDLEHIWNLCDVNNSGTLTKQEFALGMHLVYRKLNGN--ELPNRLPPSLVPSSTQIL 664
                 6789999********987652799***************************************************96..89***********98766 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.75
   EF-hand_4  20 kpednkltgdkvapvlknskleedklekiwdlad 53 
                 k++   ltg+ v pv  ++++ +++l+ki + ++
  CCD22987.1 860 KSRMAALTGKPVEPVADETEVYQEELSKIKNESE 893
                 5666789999******************987666 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0013       3.8       3      70 ..     293     352 ..     291     353 .. 0.80
   2 !   18.1   0.0   8.9e-07    0.0026       5      67 ..     578     633 ..     574     636 .. 0.85
   3 ?   -3.9   0.0         6   1.8e+04      22      47 ..     804     826 ..     803     830 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0013
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 k ++ F+++ + g++ ++ ++ + +          +s l +++l +++   Dt+k G++ f EF  ++
  CCD22987.1 293 KFETLFRSMVKPGSNTISGADCRTI--------LMKSGLQPKQLAKIWALCDTSKAGKLLFPEFALAM 352
                 5678899999999999999995533........455666788999999999*************8665 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 8.9e-07
   EF-hand_7   5 kea.FkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                 +++ F+ +Dt ++g+l  +   +++r        g + sd  le++++  D +++G+++ +EF 
  CCD22987.1 578 FYKiFETYDTEKRGHLVSSTAVEIFR------KSGLNRSD--LEHIWNLCDVNNSGTLTKQEFA 633
                 4444****************555999......77777666..99*******************6 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 6
   EF-hand_7  22 eellrllrkifqgagegsklsdeele 47 
                 +el +l+++i+     ++++s  +++
  CCD22987.1 804 NELPSLFEQIS---QIDNDISAAKIQ 826
                 68999999999...666666666666 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.011        34       2      27 ..     328     353 ..     327     355 .. 0.91
   2 ?    1.1   0.0      0.12   3.5e+02       2      16 ..     578     592 ..     577     593 .. 0.85
   3 !   17.7   0.0   6.2e-07    0.0018       2      26 ..     612     636 ..     611     639 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.011
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 l +i+++ D+ + Gk+ f Ef  ++ 
  CCD22987.1 328 LAKIWALCDTSKAGKLLFPEFALAMH 353
                 6699******************9996 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.12
                 HHHHHHHHTTTSSSE CS
   EF-hand_1   2 lkeiFrefDkDgdGk 16 
                 + +iF+ +D+ + G+
  CCD22987.1 578 FYKIFETYDTEKRGH 592
                 569*******99887 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 6.2e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkell 26 
                 l+ i+++ D++++G+++++Ef   +
  CCD22987.1 612 LEHIWNLCDVNNSGTLTKQEFALGM 636
                 7889*****************9888 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.059   1.7e+02       2      28 ..     294     320 ..     293     323 .. 0.83
   2 ?   -0.3   0.0      0.45   1.3e+03       3      27 ..     329     353 ..     327     356 .. 0.86
   3 ?    2.4   0.0     0.062   1.8e+02       2      17 ..     578     593 ..     577     606 .. 0.83
   4 !   14.5   0.0   8.3e-06     0.025       2      26 ..     612     636 ..     611     642 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.059
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrk 28 
                 ++ +F+ + k g+++i+ +++r +l k
  CCD22987.1 294 FETLFRSMVKPGSNTISGADCRTILMK 320
                 67788888888************9983 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.45
   EF-hand_6   3 reaFklfDkdgdGkidaeElrkalr 27 
                  +++ l D+++ Gk+ + E+  a+ 
  CCD22987.1 329 AKIWALCDTSKAGKLLFPEFALAMH 353
                 578999*********9999998886 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.062
   EF-hand_6   2 lreaFklfDkdgdGki 17 
                 ++++F+ +D+++ G++
  CCD22987.1 578 FYKIFETYDTEKRGHL 593
                 789*********9987 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 8.3e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkal 26 
                 l+++++l D++++G+++++E+   +
  CCD22987.1 612 LEHIWNLCDVNNSGTLTKQEFALGM 636
                 7899*****************8765 PP

>> DUF1720  Domain of unknown function (DUF1720)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -30.7  66.0         6   1.8e+04       4      56 ..      13      56 ..       1      65 [. 0.41
   2 ?   -6.1  39.2         6   1.8e+04       5      75 .]      54     150 ..      47     150 .. 0.81
   3 ?   -5.4  45.9         6   1.8e+04       1      60 [.     143     220 ..     119     233 .. 0.50
   4 !   17.6  11.1   1.3e-06    0.0038       2      51 ..     214     269 ..     211     281 .. 0.76
   5 !   17.5  31.2   1.4e-06    0.0042       5      75 .]     395     471 ..     390     471 .. 0.78
   6 !   14.1  18.3   1.6e-05     0.047      16      56 ..     466     510 ..     464     511 .. 0.79
   7 !   13.7  14.0   2.1e-05     0.062      10      47 ..     508     548 ..     502     567 .. 0.69
   8 ?   -7.5   5.3         6   1.8e+04      16      16 ..    1305    1305 ..    1271    1357 .. 0.60

  Alignments for each domain:
  == domain 1  score: -30.7 bits;  conditional E-value: 6
     DUF1720  4 qqtGfqppqqqqpqqqqplqpqpTGfmpqqqtgqglqpqpTGggqfapglqpq 56
                q+tG+ ++qqq +qqqq+ q+q+   ++      + qpq   ++q+++ lqpq
  CCD22987.1 13 QPTGYYSQQQQVQQQQQQQQQQQQQQQQ------QQQPQY--QQQYQQ-LQPQ 56
                4477776666666666222222211111......222222..122222.2222 PP

  == domain 2  score: -6.1 bits;  conditional E-value: 6
     DUF1720   5 qtGfqppqqqqpqqq..........qplqpqpTGfmpqqqtgqglqpqpT..GggqfapglqpqqTGf...................qeqaqqglqPqa 72 
                 q  fq++q+q    +          ++ + ++TG+++++ +++ + +  T  G++q+++  ++  TG+                   +++++q lqPq 
  CCD22987.1  54 QPQFQQQQPQ----PqppvqyagygAGANVTQTGVYNNPNQSSAVPSSNTlaGNNQYQQ-NNANYTGLhsninnqgyvqntnlstsqIPTMNQHLQPQG 147
                 2344444433....23345899***9999***********999999999999*999999.89999999999999999999999**999*********** PP

     DUF1720  73 TGf 75 
                 TGf
  CCD22987.1 148 TGF 150
                 **9 PP

  == domain 3  score: -5.4 bits;  conditional E-value: 6
     DUF1720   1 lqpqqtGfqppqqqqpqqq........qplqpqpTGfmpqqqtgq...glqpqpTG.ggqfap......glqpqqTGf 60 
                 lqpq tGf   ++ + +++        qp+q q TG +  +++++   ++q q TG +g  ++      ++q q TG 
  CCD22987.1 143 LQPQGTGFYGSSNSAASMPnimqqpqlQPIQNQMTGSYTSNMQQSqiqPVQNQVTGgFGANIQmsqqpqPIQNQLTGS 220
                 355555555444444444444444444555555555544333333344555555554444444555555555555555 PP

  == domain 4  score: 17.6 bits;  conditional E-value: 1.3e-06
     DUF1720   2 qpqqtG.fqppqqqqpqqq..qplqpqpTGfmpqqqtgq..glqpqpTG.ggqfap 51 
                 q q tG f+++ q q q+q  +pl pq+TG+++q+++    +l+p +TG  ++fa+
  CCD22987.1 214 QNQLTGsFNSNIQSQAQPQvvKPLLPQQTGYYMQTSQIPlePLKPTATGfINSFAN 269
                 44555526777777777778999*********99887669999******7666665 PP

  == domain 5  score: 17.5 bits;  conditional E-value: 1.4e-06
     DUF1720   5 qtGfqppqqqqpqqqqplqpqpTGfmpqqqtgqglqpqpTG.ggqfapglqpqqTGf.........qeqaqqglqPqaTGf 75 
                 +t f   +++q  ++  lqpqpTG  p +++g++lq q TG g   a+ l+pq+TGf         +++  ++l+ q+TG+
  CCD22987.1 395 KTPFDELMMTQGVMN--LQPQPTGSIPTTSFGMPLQTQITGgG--GAGMLNPQSTGFmpqtsfgmpMQTTGGRLMAQNTGM 471
                 377777777777777..9**********************944..44459*******887777776666667777788875 PP

  == domain 6  score: 14.1 bits;  conditional E-value: 1.6e-05
     DUF1720  16 pqqqqplqpqpTGfmpqqqtgqglqpqpTG.ggqfap...glqpq 56 
                  q++++lqpq+TG+ pq+++g++lq q+TG   ++++   +  pq
  CCD22987.1 466 AQNTGMLQPQNTGMIPQTSFGMPLQNQMTGgAATIPQlsfNQAPQ 510
                 455689************************555555576655666 PP

  == domain 7  score: 13.7 bits;  conditional E-value: 2.1e-05
     DUF1720  10 ppqqqqpqqq.qplqpqpTGfmpqqqtgq..glqpqpTG.gg 47 
                  pqq+ +q    +lq+q+TG++p+  +++  +l +q+TG g+
  CCD22987.1 508 APQQPLQQ-FnVGLQQQRTGYLPPSNFTTsmPLTAQKTGfGN 548
                 23333333.2479**********99998899*******9433 PP

  == domain 8  score: -7.5 bits;  conditional E-value: 6
     DUF1720   16 p 16  
                  p
  CCD22987.1 1305 P 1305
                  1 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   3.8      0.23   6.8e+02      77      94 ..      26      43 ..       9      68 .. 0.41
   2 ?    2.0   0.4     0.048   1.4e+02     144     165 ..     876     897 ..     847     909 .. 0.92
   3 !   17.7  20.3   7.6e-07    0.0023      66     181 ..     979    1102 ..     939    1123 .. 0.54
   4 ?   -2.5   4.6       1.2   3.5e+03     109     144 ..    1177    1208 ..    1113    1216 .. 0.44

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.23
                ------------------ CS
  Cwf_Cwc_15 77 aeeeeekekkeeeeeeee 94
                ++++++++++++++++++
  CCD22987.1 26 QQQQQQQQQQQQQQQQQQ 43
                111111111111111111 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.048
                 ---------------------- CS
  Cwf_Cwc_15 144 detaeLlrELekikreraeeke 165
                 det+  + EL kik+e +++ke
  CCD22987.1 876 DETEVYQEELSKIKNESEANKE 897
                 99**************998876 PP

  == domain 3  score: 17.7 bits;  conditional E-value: 7.6e-07
                  HHHHH-----------........--------------------------..-----------------............................ CS
  Cwf_Cwc_15   66 kakkrkkaeleaeeee........ekekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeee............................ 126 
                  ++ k++++++ +e  +        +                             d+ ++++++  + +e                            
  CCD22987.1  979 NRLKEQAQKKMKE--RlakfglakR-----------------------------DRSSRSRSR--SGSEaasnvatqppinenngpvaatpskystp 1042
                  2222221111111..1111222111.............................111111111..11111222333333333333333333333344 PP

                  .....------------------------------------------------------- CS
  Cwf_Cwc_15  127 .....eesdddsdsdsdddddedetaeLlrELekikreraeekerkerekaeeeekeree 181 
                       + + +++ ++sd dd+e+e++ L+ EL+k+k  +++eke++ +e +++ e+e ++
  CCD22987.1 1043 fenedAVKASKDIDESDGDDEEEEEKRLMEELNKLKSKKKAEKEKRLAELRQQIEHENKQ 1102
                  322224555577788889999***************988877777666655554444444 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.2
                  .-----------------..------------------ CS
  Cwf_Cwc_15  109 reidaddedseeeeeeee..eesdddsdsdsddddded 144 
                  ++ d    +++++ +  +  ee++dd      +d+d+d
  CCD22987.1 1177 SSFDLKAAEQQRRIQ--RglEEDSDDGW----SDSDDD 1208
                  233333322222221..11122222222....222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3536  (0.197222); expected 358.6 (0.02)
Passed bias filter:                      776  (0.0432818); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                        48  (0.00267723); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.68u 0.37s 00:00:02.04 Elapsed: 00:00:00.64
# Mc/sec: 6621.93
//
Query:       CCD22988.1  [L=262]
Description: hypothetical protein NDAI_0A08350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-35  119.2   3.3    6.5e-35  119.2   0.0    2.2  2  SRP1_TIP1       Seripauperin and TIP1 family
    9.2e-06   25.1   9.1     0.0001   21.7   9.1    3.1  1  PIR             Yeast PIR protein repeat
  ------ inclusion threshold ------
       0.19   10.9  19.8       0.25   10.5  19.8    1.2  1  SOG2            RAM signalling pathway protein
       0.19   10.5   3.3       0.19   10.5   3.3    1.2  1  SAPS            SIT4 phosphatase-associated protein
       0.53    8.9  10.6       0.56    8.8  10.6    1.1  1  Hamartin        Hamartin protein
        1.8    8.7   8.9        2.9    8.0   8.9    1.4  1  DDHD            DDHD domain
        3.2    6.2  18.2        4.2    5.8  18.2    1.1  1  Macoilin        Macoilin family
        3.6    7.4  13.3        4.7    7.1  13.3    1.2  1  SRP-alpha_N     Signal recognition particle, alpha subunit, N
          4    7.3  13.2        5.1    7.0  13.2    1.1  1  TFIIA           Transcription factor IIA, alpha/beta subunit
        4.4    6.0  12.0          6    5.5  12.0    1.2  1  Presenilin      Presenilin
        5.1    5.5  17.6        6.6    5.2  17.6    1.1  1  Utp14           Utp14 protein
        9.8    5.7  12.6         13    5.3  12.6    1.2  1  DUF572          Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> SRP1_TIP1  Seripauperin and TIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   4.4e-38   6.5e-35       1      96 [.      30     129 ..      30     132 .. 0.96
   2 ?   -0.3   1.1      0.77   1.2e+03      41      77 ..     200     236 ..     157     238 .. 0.79

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 4.4e-38
   SRP1_TIP1   1 aavaaaqteaevaelevllnDvksnlkeYlslaka.nsgfs...lPsgvlsvyaalatatddsYttllseidfaevssmitglPWYssRLepaiesala 95 
                 aava+aqte++vael+ llnDv snl++Y++la++  sg+s   +P+gvl++++ala+atd+sYttl+se+dfa+v+smit+lPWYssRLe+ ++s+l 
  CCD22988.1  30 AAVASAQTETQVAELNLLLNDVGSNLNDYMTLATTpGSGISladMPAGVLDIGMALASATDKSYTTLYSEVDFAGVESMITKLPWYSSRLEGPLNSILG 128
                 689*******************************9999999999***************************************************9987 PP

   SRP1_TIP1  96 s 96 
                 +
  CCD22988.1 129 K 129
                 6 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.77
   SRP1_TIP1  41 lPsgvlsvyaalatatddsYttllseidfaevssmit 77 
                   + v++ ++a ++a+ +s    +s+id  +++++++
  CCD22988.1 200 SKTTVTTSAKASTSAKASSSAQAISQIDDGQIQATVS 236
                 4556777888888888888889999999999988775 PP

>> PIR  Yeast PIR protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   9.1     7e-08    0.0001       1      16 [.     220     235 ..     220     236 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7e-08
         PIR   1 AaaVSQIgDGQiQATT 16 
                 A+a+SQI DGQiQAT 
  CCD22988.1 220 AQAISQIDDGQIQATV 235
                 78*************6 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  19.8   0.00016      0.25     255     363 ..     133     228 ..      66     250 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
        SOG2 255 spaangaqsetsersasssg.vqssasstPlgegstspp.galsrqslsttgststltsssksrsssrsntnasastprslattpappasaesfastlt 351
                 + ++++a+++ts  +++ss  ++++ s     ++s+s+  ++++++s s++ s+s   sss + sss+++++ +++t + +a+t+a ++s++++     
  CCD22988.1 133 TTSSKAAETTTSAAATTSSKaAETTTSA----AASSSAKaSSSAAASSSAKASSSAAASSSAKASSSAAASSKTTVTTSAKASTSAKASSSAQA----- 222
                 1111111112222122211111111111....11111111122222222233333333444444444444444444444444444444444433..... PP

        SOG2 352 asrintlaavDe 363
                        +++D+
  CCD22988.1 223 ------ISQIDD 228
                 ......333443 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.3   0.00013      0.19     262     331 ..     133     212 ..      35     249 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
        SAPS 262 tseeealedvsdeaskeesaesedltdkdedvsleesksakd................enkesdesesdtaeesseededdassee 331
                 t++++a e ++++a++++s+++e +t++ ++ s ++s+sa +                +      ++s+ a  s++  +++a++++
  CCD22988.1 133 TTSSKAAETTTSAAATTSSKAAETTTSAAASSSAKASSSAAAsssakasssaaasssaK------ASSSAAASSKTTVTTSAKAST 212
                 33355555555555555555555555555555555555555533333333332211221......111111122222222222222 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  10.6   0.00038      0.56     359     470 ..     125     240 ..      31     250 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00038
    Hamartin 359 sllsskvsstpeaagkatpetTPakssrklppslsesavvvalpassrksspprkdeks..esskpdlskqeevenekeleeslk....skssvtlseL 451
                 s l +++  t+++a+++t+++   +ss+ +++++s  a ++a+ +ss  +s   k ++s   ss+ + s+++ ++++++++ s+k     k s + + +
  CCD22988.1 125 SILGKDAATTSSKAAETTTSAAATTSSKAAETTTSAAASSSAKASSSAAASSSAKASSSaaASSSAKASSSAAASSKTTVTTSAKastsAKASSSAQAI 223
                 344455566666666666665444444433333333333323333332222222222221112222222222222222333322211113333333335 PP

    Hamartin 452 sdvikelleaesedsveke 470
                 s++ + +   ++  s+++e
  CCD22988.1 224 SQIDDGQ--IQATVSQQTE 240
                 5555444..3333333333 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   8.9    0.0019       2.9      88     166 ..     136     212 ..      83     251 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0019
        DDHD  88 lelkesltsigaalkqkvsglvsslsallnrslelaeeesaslaessksherasesskasqeskaaesstasssakssk 166
                 +++ e++ts+ a++++k  ++++s +a  ++s + +++ +as++++ +s+++as+s kas++ +a++++t ++sak s+
  CCD22988.1 136 SKAAETTTSAAATTSSKAAETTTSAAA--SSSAKASSSAAASSSAKASSSAAASSSAKASSSAAASSKTTVTTSAKAST 212
                 334444444444444444444444322..11222112222222111111122222222221111111111111111111 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  18.2    0.0028       4.2     292     382 ..     142     238 ..     105     254 .. 0.37

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0028
    Macoilin 292 kskskrlsksessgsesellveesvkskssssssssnknskkasagsagssnssskkhsessksvtsssssknskkq........klpaGkssaalkda 382
                 +++++  ++s++ +++++  +++s+k++ss++ sss+k s++a+a+s++ ++ss++   +s+  vt+s++++ s k         ++  G+ +a+  ++
  CCD22988.1 142 TTSAAATTSSKAAETTTSAAASSSAKASSSAAASSSAKASSSAAASSSAKASSSAA--ASSKTTVTTSAKASTSAKAsssaqaisQIDDGQIQATVSQQ 238
                 11111111111111111222222222222222222222222222221111111111..11111112222122222221111112234444444444444 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  13.3    0.0031       4.7     112     191 ..     137     224 ..      88     249 .. 0.40

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0031
                  .......XXX..XXXXXXXXXX.....XX.XX...............XX......XXXXX...XXXXXXXXXX...XXXXXXX.XXX.XXXXX CS
  SRP-alpha_N 112 kaakepkamksfeeskkskktvksskedkkpe....gkkkkgakkekda......sddstpsatpetsrpstp...sglltakeagptaedvs 191
                  kaa e++++ + ++s+k+++t++s  ++++++    +    +a+++++a      s++ + s++ ++s+++t     + +t+ +a+++a+++s
   CCD22988.1 137 KAA-ETTTSAAATTSSKAAETTTSAAASSSAKasssA----AASSSAKAsssaaaSSSAKASSSAAASSKTTVttsAKASTSAKASSSAQAIS 224
                  222.122222233333333333333222222111110....1111111111111111111111111122211111111111111222222222 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  13.2    0.0034       5.1      41     170 ..     136     242 ..     105     260 .. 0.29

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0034
       TFIIA  41 skaaefpwdpkpeeaqspqfvlqlpqslkqalq.asaaaa.sqapastsqslpslvipagksvqslt.anssaataatfslpakleppvqipagvtlqt 136
                 skaae +   +  ++ ++ ++++++++ ++a++ +saaa+ s++ +s+++   s+ +++++ ++s+t + +sa+++++ +                   
  CCD22988.1 136 SKAAETTTSAAATTSSKAAETTTSAAASSSAKAsSSAAASsSAKASSSAAASSSAKASSSAAASSKTtVTTSAKASTSAKAS----------------- 217
                 3333322211111111111111111111111111111111111111111111111111111111111111111122222222................. PP

       TFIIA 137 asgqlykvnvqasgaqqiaaqplqqvvqqsqgsa 170
                            a++ +qi   ++q +v+q++++ 
  CCD22988.1 218 ---------SSAQAISQIDDGQIQATVSQQTENG 242
                 .........2222223333333333333222222 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  12.0     0.004         6     246     312 ..     146     214 ..     114     253 .. 0.30

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.004
  Presenilin 246 eeasesskeeeseeesseksaqsse....................seeeseeesseaessaeesseekeseessesseeeeeeeeee 312
                 +++++s+++e++++ ++++sa++s+                    +          a+ssa++ss++        + +++ ++++++
  CCD22988.1 146 AATTSSKAAETTTSAAASSSAKASSsaaasssakasssaaasssaK----------ASSSAAASSKT--------TVTTSAKASTSA 214
                 1111111111111111111111111011100000100111111110..........11111111111........111111111111 PP

>> Utp14  Utp14 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  17.6    0.0044       6.6     462     567 ..     136     228 ..     114     252 .. 0.25

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0044
       Utp14 462 ekreeeeedeskaaeekakkekskksekkkkkkkeesakeeeeeeeenpwlaeeekkkskkeevaaekssskakkskakakkkkkksskkkeaakekkk 560
                 +k+ e  ++++ ++++ka+++++++++++++k+++++a+++++++++++      +++s+k + +a  ss+++ + +aka+ ++k+ss++++       
  CCD22988.1 136 SKAAETTTSAAATTSSKAAETTTSAAASSSAKASSSAAASSSAKASSSAA-----ASSSAKASSSAAASSKTTVTTSAKASTSAKASSSAQA------- 222
                 11111111111111111111111111111111111111111111111111.....0011111111111111111111122222222222111....... PP

       Utp14 561 kdeeidl 567
                   ++id 
  CCD22988.1 223 -ISQIDD 228
                 .111111 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  12.6    0.0087        13     227     302 ..     145     219 ..      87     250 .. 0.38

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0087
      DUF572 227 seesaksakkkptkkesskekkkeslekklskltkkkad.sslvvrKkkkeeekskeskekteeeskeseeeskkee 302
                 ++ +++s++ ++t++ ++++++k+s + + s++ k++++       K +++  ++++sk++ ++++k s++++++++
  CCD22988.1 145 AAATTSSKAAETTTSAAASSSAKASSSAAASSSAKASSSaAASSSAKASSS--AAASSKTTVTTSAKASTSAKASSS 219
                 111001000111111111111111111111111111111111111111111..111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2644  (0.147471); expected 358.6 (0.02)
Passed bias filter:                      829  (0.0462379); expected 358.6 (0.02)
Passed Vit filter:                       266  (0.0148363); expected 17.9 (0.001)
Passed Fwd filter:                        79  (0.00440627); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.97u 0.37s 00:00:01.34 Elapsed: 00:00:00.50
# Mc/sec: 1588.47
//
Query:       CCD22989.1  [L=823]
Description: hypothetical protein NDAI_0A08360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1130  (0.0630264); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 6052.65
//
Query:       CCD22990.1  [L=1404]
Description: hypothetical protein NDAI_0A08370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-66  223.9  64.8    4.9e-35  120.8  15.9    3.2  3  ABC2_membrane    ABC-2 type transporter
    2.5e-28   99.3   0.0    1.1e-15   58.3   0.0    2.9  2  ABC_tran         ABC transporter
    7.3e-28   96.3   4.6    2.5e-25   88.2   0.1    4.3  4  PDR_CDR          CDR ABC transporter
    8.3e-06   25.8   0.2    1.7e-05   24.8   0.2    1.4  1  RsgA_GTPase      RsgA GTPase
    2.5e-05   24.3   1.9     0.0035   17.2   0.3    2.8  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    2.6e-05   23.5  59.2     0.0028   16.8  17.6    3.8  3  ABC2_membrane_3  ABC-2 family transporter protein
    0.00034   20.1   0.5      0.018   14.5   0.5    2.4  1  SMC_N            RecF/RecN/SMC N terminal domain
     0.0022   18.4   0.1     0.0049   17.3   0.1    1.6  1  AAA_16           AAA ATPase domain
      0.004   17.7   0.1      0.014   15.9   0.1    2.0  1  AAA_23           AAA domain
  ------ inclusion threshold ------
      0.042   14.1   0.0       0.11   12.8   0.0    1.8  1  AAA_22           AAA domain
       0.05   13.3   0.2       0.13   12.0   0.2    1.7  1  AAA_29           P-loop containing region of AAA domain
      0.076   12.6   0.3       0.23   11.0   0.0    1.9  3  AAA_25           AAA domain
      0.091   13.3   0.0       0.26   11.8   0.0    1.8  1  AAA_18           AAA domain
       0.16   12.1   0.4       0.65   10.1   0.1    2.2  2  MMR_HSR1         50S ribosome-binding GTPase
       0.17   12.2   1.0        1.2    9.5   0.1    3.0  2  Wzz              Chain length determinant protein


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8  30.5   7.4e-37   8.8e-34       2     210 .]     386     595 ..     385     595 .. 0.98
   2 ?    0.3   0.1      0.33   3.9e+02      51      70 ..     655     674 ..     639     700 .. 0.58
   3 !  120.8  15.9   4.1e-38   4.9e-35       1     208 [.    1068    1277 ..    1068    1279 .. 0.97

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 7.4e-37
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsay 96 
                    qi+ l+ r f++ ++d+ ++ ++++i+ ++++lv+g++f++++ n+ + ++r  l ffs+lf++f++l+++ p  +++++v+ ++    +y  ++ 
     CCD22990.1 386 QIMFLIERAFQRSLGDKIYL-IAQTISVIIQSLVIGSLFYDTPlNTIGSYSRGSLTFFSILFFTFLSLAEM-PAGFQRQPVVSKQAKLHFYYFWVE 479
                    999**************999.**************************************************.************************ PP

  ABC2_membrane  97 vlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm.pkwl 189
                     la +++e ++ l++++if+++ yfl +l+++  rff+fll+l l+ +a++sl+ l  +lap++  a+++a+++ll + +++ ++i +++m p w+
     CCD22990.1 480 TLATTVFEYLFKLILVFIFSILLYFLAHLQYNaaRFFIFLLFLALYNFAMVSLFSLTTMLAPTLSIANLFAGILLLAIAMYASYVIYLHDMhP-WF 574
                    *******************************************************************************************77.** PP

  ABC2_membrane 190 qwiaylnPltyavealrsnlf 210
                     wiaylnP +ya+e++++n++
     CCD22990.1 575 VWIAYLNPARYAMESILANEL 595
                    ******************985 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.33
  ABC2_membrane  51 nrpgllffsvlflafsalts 70 
                    n+  +++f+v+fl+ s+++s
     CCD22990.1 655 NFGIIIAFLVFFLFCSLVAS 674
                    23444455555555333333 PP

  == domain 3  score: 120.8 bits;  conditional E-value: 4.1e-38
  ABC2_membrane    1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysl 93  
                     +q+++++kr+++  +rd+++  +++++     +l++g+ f+++++s +gl+   +++f++l ++  ++ +v+    + ++v+ +re +s++y++
     CCD22990.1 1068 YQLMTIVKRQYICTKRDKTYV-AAKFLLNGGAGLFIGFSFWDIKKSLGGLQDCIFFCFMALCVSSPLINQVQDKALKSKEVFvAREARSNTYHW 1160
                     699***************999.******************************************9***************************** PP

  ABC2_membrane   94 sayvlakvlvelpvsllqalifllivyflvgldls.rf.flflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm 185 
                     s  +la++++elp+++  +++f++++yf   +d s ++ + f+l  ++++ + ss+gl+++  ap++++a++++ ++++++  ++G++ p+ + 
     CCD22990.1 1161 SILLLAQTIIELPLAITSSTVFFFCAYFCCKFDNSpHIaGVFYLNYIVFSAYYSSFGLWLIYTAPNLQTAAVFVAFFYSFTASFCGVMQPYGMF 1254
                     **********************************98667999**************************************************** PP

  ABC2_membrane  186 pkwlqwiaylnPltyavealrsn 208 
                     p++++++++++P+ty+++ ++s 
     CCD22990.1 1255 PGFWKFMYRVSPYTYFIDTFVSL 1277
                     ******************99886 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   1.9e-12   2.2e-09       1     136 [.      49     199 ..      49     200 .. 0.90
   2 !   58.3   0.0   9.3e-19   1.1e-15       2     137 .]     778     917 ..     777     917 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1.9e-12
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esd 82 
                 l++++++ + ge+v ++G+     S+L+k l    k      +G+i+++ ++ k+   +   ++i +  +++ +fp ltv+++             e++
  CCD22990.1  49 LNDLTFQANGGEMVLVLGKPT---SSLFKSLFSAKKSlnysPSGSIQFKANEYKS-YASNCPHQIIYNNEQDIHFPFLTVQQTldfalsckfnvpvEER 143
                 78999*************985...899999988777777779*******999999.6778888888999999******************999988555 PP

                 TC.HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 ee.iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++  +++l+++gl+++ dtvv+++  + +SgG+++r+++ ++++ + +++l+D+ t
  CCD22990.1 144 VKiRNELLKEFGLSHVLDTVVGNDFvRGVSGGERKRISIIETFIANGSVYLWDNST 199
                 554789***************99999***************************988 PP

  == domain 2  score: 58.3 bits;  conditional E-value: 9.3e-19
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdeeieka 88 
                 +nvs  ++ g ++a++Ge+GaGK+tLl++l++ ++     Ge+l+dgk+l++  +  ++++ig+++q++ + + ltv+e+           +++ ++++
  CCD22990.1 778 NNVSGYISSG-LTALMGESGAGKTTLLNVLSQRVESgvVTGELLIDGKPLTN--EDAFKRSIGFVQQQDLHLDLLTVKESleiscvlrgdGDTAYLATI 873
                 6777777776.789*******************9998899***********9..99*************************999988765555557777 PP

                 HHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran  89 lsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137
                  + l+l+   ++ v    + LS  +k+ +++   l++kp+lll lDEpt+
  CCD22990.1 874 SDLLKLPP--NSLV----ADLSPTEKKLLSIGVELVTKPSLLLfLDEPTS 917
                 77777766..7777....9********************987549***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   2.6       4.3   5.1e+03      43      76 ..     505     538 ..     496     546 .. 0.69
   2 !   88.2   0.1   2.1e-28   2.5e-25       1      82 [.     607     688 ..     607     691 .. 0.95
   3 ?   -2.3   1.9       3.6   4.3e+03      38      70 ..    1210    1247 ..    1194    1253 .. 0.66
   4 !   18.9   1.4     9e-07    0.0011      29      67 ..    1332    1369 ..    1327    1383 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.3
     PDR_CDR  43 sshlwrnfgiliaflifflalyllatelisaeks 76 
                  +hl +n    + fl+f  + ++ +++l+s +++
  CCD22990.1 505 LAHLQYNAARFFIFLLFLALYNFAMVSLFSLTTM 538
                 5677777777777777777777777777766654 PP

  == domain 2  score: 88.2 bits;  conditional E-value: 2.1e-28
     PDR_CDR   1 vPsgpgyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlv 82 
                 vP+gp y++++ ++r+Ca  Ga+ G++yV G dYl++ ++ys+sh+wrnfgi+iafl+ffl++ l+a+++i+ + +k ++ v
  CCD22990.1 607 VPRGPAYSSIDVSKRACAWRGATLGNDYVRGRDYLAQGLDYSYSHVWRNFGIIIAFLVFFLFCSLVASQYIKPKFNKENTEV 688
                 8**********************************************************************99988776655 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 3.6
     PDR_CDR   38 sfgyssshlw.....rnfgiliaflifflalyllatel 70  
                  s  yss  lw      n+    +f++ff  +++ ++ +
  CCD22990.1 1210 SAYYSSFGLWliytaPNLQTAAVFVAFFYSFTASFCGV 1247
                  44455555664444458888888888888877776655 PP

  == domain 4  score: 18.9 bits;  conditional E-value: 9e-07
     PDR_CDR   29 VsGddYlelsfgyssshlwrnfgiliaflifflalylla 67  
                    Gdd+l+ + + s++++wrnfgi +af++f +++ ++ 
  CCD22990.1 1332 TVGDDFLAVE-NMSYDNRWRNFGIECAFVAFNIIAMFIG 1369
                  5699999977.99******************99998875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.2   1.4e-08   1.7e-05      65     124 ..     756     811 ..     734     834 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.4e-08
                  HHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  65 leelkeelealgyevllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpele 124
                   ++     ++++y+v      +k+ +++++ ++++ +++l+G+SG+GK+tL+n+l ++ e
   CCD22990.1 756 SQKHIISWRNINYTVN----GDKQLINNVSGYISSGLTALMGESGAGKTTLLNVLSQRVE 811
                  3444444455554443....457889*****************************98754 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0096        12       1      20 [.     788     807 ..     788     835 .. 0.83
   2 !   17.2   0.3   2.9e-06    0.0035     229     296 ..     876     944 ..     823     949 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0096
      AAA_21   1 lnvliGpNgsGKSnLLdald 20 
                 l++l G  g+GK++LL  l+
  CCD22990.1 788 LTALMGESGAGKTTLLNVLS 807
                 699*************9995 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.9e-06
      AAA_21 229 gqelparel....SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                   +lp+++l    S   k+ll + + l   ++   ll++DEp +gL+ ++  +++++lk+ls+  +Q i+ T
  CCD22990.1 876 LLKLPPNSLvadlSPTEKKLLSIGVELVTKPS--LLLFLDEPTSGLDSEAALTIVKFLKKLSQ-QGQAIFCT 944
                 45555555555558888888888888887776..8****************************.88887766 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8  29.3   1.9e-05     0.023      97     341 ..     371     668 ..     303     672 .. 0.71
   2 !   16.8  17.6   2.4e-06    0.0028     166     320 ..    1119    1281 ..    1108    1370 .. 0.77
   3 ?   -2.3   0.2       1.6   1.9e+03     274     305 ..    1359    1391 ..    1355    1392 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
  ABC2_membrane_3  97 esatvtvlinssnl.nsskailnalns.llqqlnasalvlqseatstsaninvestql.....eeelsnvasflvg.liliilifitasfiavs 182
                      +s+++t  +n s + +++ +i+ a++  l  ++             +++++ ++s+       + +l+ + s+  g l ++ ++f+t++++a +
       CCD22990.1 371 NSDDITQRFNISLTkQIMFLIERAFQRsLGDKIY---------LIAQTISVIIQSLVIgslfyDTPLNTIGSYSRGsLTFFSILFFTFLSLAEM 455
                      5555555555444423334455555543322211.........112222222222222444446777777777777677777788888877766 PP

  ABC2_membrane_3 183 iveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll..afgl....gipfgnlglllllfllfglayialgyllsslfknsetaq 270
                       +   ++ +   q  + +  + +w+  + ++++ yl+ l+l++++  ++ +    +++   ++++ll++ l+ +a+++l+ l + l  + + a+
       CCD22990.1 456 PAGFQRQPVVSKQ--AKLHFYYFWVETLATTVFEYLFKLILVFIFsiLLYFlahlQYNAARFFIFLLFLALYNFAMVSLFSLTTMLAPTLSIAN 547
                      5666666666666..45888889999999988888888877777443333345557888899******************************** PP

  ABC2_membrane_3 271 ilifivil.llsgffgglfpledlpsalkwifsiiPffapglgllrlitgdplwe....................................... 324
                      ++++i++l +++ ++++++ l d++ ++ wi++++P  + ++++l       l++                                       
       CCD22990.1 548 LFAGILLLaIAMYASYVIY-LHDMHPWFVWIAYLNPARYAMESILANE----LYNlkldcadsivprgpayssidvskracawrgatlgndyvr 636
                      **99998844555555555.778****************999985552....233445677788888999999999999999999999999999 PP

  ABC2_membrane_3 325 ...............illsliilalfavvyll 341
                                     ++++++i ++f v++l 
       CCD22990.1 637 grdylaqgldysyshVWRNFGIIIAFLVFFLF 668
                      99999999999999999999999999999986 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 2.4e-06
  ABC2_membrane_3  166 liliilifitasfiavsiveEkesrikelqlvsgvsplq.....ywlskilgdflvyllqlllill...lafglgipfg.nlglll.llfll 247 
                        i+++++ +++s+ + + v++k  + ke+ +    +  +     ++l+  ++ + ++++++ ++++   ++++  ++ + ++  ++ l++++
       CCD22990.1 1119 CIFFCFMALCVSSPLINQVQDKALKSKEVFVAREARSNTyhwsiLLLAQTIIELPLAITSSTVFFFcayFCCK--FDNSpHIAGVFyLNYIV 1208
                       68999999999999999***********987777766666666677888888888888888777765445888..888878888888***** PP

  ABC2_membrane_3  248 fglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrlitgd 320 
                       f+  y+++g++l +   n  ta +++ ++ +++  f+g++ p   +p+++k   ++ P +++++ +++l+  d
       CCD22990.1 1209 FSAYYSSFGLWLIYTAPNLQTAAVFVAFFYSFTASFCGVMQPYGMFPGFWKFMYRVSPYTYFIDTFVSLVLHD 1281
                       ************9999999999888888888799999999999999*********************998544 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.6
  ABC2_membrane_3  274 fivilllsgffgglfpledl.psalkwifsiiP 305 
                       ++++++++++ +++  ++++ p+ +k++ +i+P
       CCD22990.1 1359 VAFNIIAMFIGYYMTYVSKVwPKVFKVVRMIVP 1391
                       566676666666655555433788888888877 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.5   1.5e-05     0.018      19     201 ..     781     949 ..     766     965 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
                 EEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE...SSSSSSCEEEEEEEETTSEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  19 ilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk...lkiekeevsisrrvkrkgeseykin 114
                 ++ +s+++ta++G+ G+GK+ ll+ +    ++r        + + li   k   + +  + +i f ++++    l + ke+++is  +  +g++ y   
  CCD22990.1 781 SGYISSGLTALMGESGAGKTTLLNVL----SQRVE--SGVVTGELLIDG-KPLTNEDAFKRSIGFVQQQDLhldLLTVKESLEISCVLRGDGDTAYL-- 870
                 55556666666666666666655533....43322..223333445554.22222222222222322222212233333334444444444443332.. PP

                 TEEE-HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 115 gkevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreem 201
                    +t +++ +l +++ +    LS  ek+L+++ + +     kp+ l +lDe  + LD +    ++++lk+ s++ Q i  ++++  
  CCD22990.1 871 ---ATISDLLKLPPNSLV--ADLSPTEKKLLSIGVEL---VTKPSLLLFLDEPTSGLDSEAALTIVKFLKKLSQQGQAIFCTIHQPS 949
                 ...333333333333333..36999999999999885...579*************************************9998865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   4.1e-06    0.0049      25      95 ..     787     858 ..     774     943 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.1e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggif....lrgkcdqlesaipysa.laqalareellrqlldeaesaele 95 
                 +l+ l GesG GK++l++ l +++e   +++    + gk   +e a  +s+ ++q+    +l  +ll+ +es e +
  CCD22990.1 787 GLTALMGESGAGKTTLLNVLSQRVESG-VVTgellIDGKPLTNEDAFKRSIgFVQQQ---DLHLDLLTVKESLEIS 858
                 7899*****************877755.55567678999988888877777788887...5666666665544333 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.2e-05     0.014      18      39 ..     785     806 ..     759     820 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
      AAA_23  18 skgltlItGpNGaGKTTildAi 39 
                 s+glt++ G+ GaGKTT+l+ +
  CCD22990.1 785 SSGLTALMGESGAGKTTLLNVL 806
                 89*****************976 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   8.9e-05      0.11       6      29 ..     787     810 ..     784     943 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 8.9e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                 g+++++GesG+GKTtll+ l ++ 
  CCD22990.1 787 GLTALMGESGAGKTTLLNVLSQRV 810
                 7899*************9888776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   0.00011      0.13      22      39 ..     786     803 ..     775     808 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
      AAA_29  22 kgatlltGpsGsGKSTll 39 
                 +g t l+G+sG+GK+Tll
  CCD22990.1 786 SGLTALMGESGAGKTTLL 803
                 6789*************9 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00019      0.23      26      60 ..     780     813 ..     771     829 .. 0.82
   2 ?   -3.6   0.0       5.8   6.9e+03     167     192 ..     926     951 ..     920     951 .. 0.83
   3 ?   -3.8   0.0       6.8   8.1e+03      70     101 ..    1023    1052 ..    1018    1067 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
      AAA_25  26 vkgllpagelallaGapgtGKttlaldlalavatG 60 
                 v g++   +l++l+G +g+GKttl+  l+  v +G
  CCD22990.1 780 VSGYI-SSGLTALMGESGAGKTTLLNVLSQRVESG 813
                 66776.699***************99988777655 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.8
      AAA_25 167 alvealeriarrtgaavllvhHvgKe 192
                  +v+ l++++++ +a+++ +h+++K+
  CCD22990.1 926 TIVKFLKKLSQQGQAIFCTIHQPSKS 951
                 57888999999999********9995 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 6.8
      AAA_25   70 eqgkVlyvsaEdsedelrrRlravgealrdda 101 
                  ++++ l+ + ++++ ++++Rl+ + +++ + +
  CCD22990.1 1023 TNWAELWENSDEKR-GIENRLQVLEQDA-LAE 1052
                  66677788888888.9999999988885.334 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00022      0.26       3      55 ..     791     841 ..     790     869 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00022
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrlded 55 
                 l+G +G+GKttl + Ls+r ++gv+ ++++ ++ +l+ +d++  ++s  ++++
  CCD22990.1 791 LMGESGAGKTTLLNVLSQRVESGVVTGELLIDGKPLTNEDAF--KRSIGFVQQ 841
                 7899***************99999999999999999999998..555444444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.9   4.6e+03      41      58 ..     255     272 ..     212     334 .. 0.56
   2 ?   10.1   0.1   0.00054      0.65       3      22 ..     790     809 ..     788     819 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 3.9
                 EEETTEEEEEEECGGCSS CS
    MMR_HSR1  41 vklkgkeielvDtpGlie 58 
                  ++++   ++ Dt G+ +
  CCD22990.1 255 GTVDECLTYFHDTLGIPK 272
                 222233478888888632 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00054
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 a++G + +GK+tL+n l+++
  CCD22990.1 790 ALMGESGAGKTTLLNVLSQR 809
                 89***************987 PP

>> Wzz  Chain length determinant protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00097       1.2      10      41 ..     650     681 ..     649     686 .. 0.89
   2 ?   -2.3   0.1       4.7   5.6e+03      43      70 ..     733     759 ..     725     787 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00097
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-E CS
         Wzz  10 svLwkrkklIilvtllfallaviyaflatpkY 41 
                 s +w+++ +Ii++ ++f++++++ +   +pk+
  CCD22990.1 650 SHVWRNFGIIIAFLVFFLFCSLVASQYIKPKF 681
                 579**********************8888887 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.7
                 EEEEEES--CHHHHH.HHHHCCHHHHHHH CS
         Wzz  43 ataqilvpekkqvea.ssltaqdvqanlq 70 
                 +t +i ++++++ e+ + +  + vq+++ 
  CCD22990.1 733 STDTIVQNSESN-ENgE-VVMEAVQSQKH 759
                 666666666666.5633.33344444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1026  (0.0572257); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.49
# Mc/sec: 8676.10
//
Query:       CCD22991.1  [L=152]
Description: hypothetical protein NDAI_0A08380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-25   88.6   0.1    3.1e-25   88.0   0.1    1.4  1  TOM13     Outer membrane protein TOM13


Domain annotation for each model (and alignments):
>> TOM13  Outer membrane protein TOM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.1   1.7e-29   3.1e-25       9      84 .]      53     139 ..      40     139 .. 0.65

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 1.7e-29
       TOM13   9 ssleeeeele.sssesssssplilykpp...tllsllrsaainlvLPFinGlmLGfGellAhEiafrlgW.......sgtkvfPesR 84 
                  s++++ee + ss++++ +++l +   p   +l+s++ s++inlvLPF+nGlmLGfGel+AhE++++++W       +g +++PesR
  CCD22991.1  53 RSVSDDEEKNnSSNNETINAILNINLNPkfmKLISFAGSCSINLVLPFVNGLMLGFGELFAHELSWKFNWfggrshpNGFRIYPESR 139
                 22222233220222333333444555551225667789********************************88888877888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1222.42
//
Query:       CCD22992.1  [L=604]
Description: hypothetical protein NDAI_0A08390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-98  329.9   6.1    2.1e-98  328.9   6.1    1.5  1  LETM1         LETM1-like protein


Domain annotation for each model (and alignments):
>> LETM1  LETM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.9   6.1  1.2e-102   2.1e-98       2     268 .]     115     389 ..     114     389 .. 0.96

  Alignments for each domain:
  == domain 1  score: 328.9 bits;  conditional E-value: 1.2e-102
       LETM1   2 fpkikkelkhyvkGtkllfadvkisvkllvkllkgkeLsrrEreqlkrttaDllrlvPfsvfiivPfaelllpvllklFPnlLpstFeskkqkeeklkk 100
                 +++ik+e+khyv+Gtkll++++kis+kll+k+++g+eLsrrE +qlkrt +D++rlvPfs+f+i+Pfaelllpv+lklFPnlLpst+es ++k++k++k
  CCD22992.1 115 MTRIKHEVKHYVNGTKLLGYEIKISTKLLIKFVQGYELSRRESNQLKRTISDVFRLVPFSAFVIIPFAELLLPVALKLFPNLLPSTYESGTDKQKKRNK 213
                 689************************************************************************************************ PP

       LETM1 101 rlkarlevakfLqetlees..lkkkkkekkekaeelkeflkk......vrsggepeevsneeilkvaklFkdeltLdnlsrkqlkalckllslqpfgtd 191
                  ++ r+++++fL+etlee   +++++ e++ek++++ +f+kk      +  ++++ + s+ ei+++aklFk++l Ldnlsr+ql+a++k++sl+pfg+d
  CCD22992.1 214 LIEIREKTSSFLHETLEELslINYRTIENSEKRKNFLNFFKKlyafkqIDANDHSIKFSHVEIINIAKLFKNDLILDNLSRPQLVAMSKFMSLRPFGND 312
                 ****************999987777889999***********5555555555555555***************************************** PP

       LETM1 192 nllryrlrkklreikedDkaikreGvdsLseeeLqeacrsRGlraaglseeelreqLeqWlelslkkkvpsslLlLs 268
                 nllryr+r++l++i+edDk i++e v++Ls eeL++ac sRG++a+g+++++l+++L+ Wlel+l++kvps+l++Ls
  CCD22992.1 313 NLLRYRIRYELKKIMEDDKIIDYENVETLSYEELYNACVSRGMKAYGVERNDLIDNLKVWLELRLNQKVPSVLMVLS 389
                 ***************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1939  (0.108149); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 4300.96
//
Query:       CCD22993.1  [L=389]
Description: hypothetical protein NDAI_0A08400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0034   17.4   9.2     0.0034   17.4   9.2    2.6  2  bZIP_1          bZIP transcription factor
  ------ inclusion threshold ------
      0.012   15.7  10.0      0.012   15.7  10.0    2.2  3  bZIP_2          Basic region leucine zipper
        2.6    8.6  12.8       0.15   12.6   6.4    2.1  3  bZIP_Maf        bZIP Maf transcription factor


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   9.2   5.8e-07    0.0034       7      58 ..      60     111 ..      53     117 .. 0.90
   2 ?    1.0   0.2     0.079   4.7e+02      32      51 ..     362     381 ..     359     387 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.8e-07
                 XXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   7 ekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevek 58 
                 +kr+ +NR a+r++R+R   +i+ Le+ v+ L+    s  ++ + l+k+++ 
  CCD22993.1  60 AKRRKQNRDAQRAYRERNANKIQVLEKSVESLQMLVDSWEQKYSLLEKQSND 111
                 69********************************999999999999999875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.079
                 HHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  32 errvkaLekeNksLkselee 51 
                 e+r++ L++eN +  +++++
  CCD22993.1 362 ESRSASLSSENNDSYKRIKR 381
                 78999999999987777776 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7  10.0   1.9e-06     0.012       3      54 .]      57     108 ..      54     108 .. 0.90
   2 ?   -2.8   1.0       1.2   7.2e+03      29      46 ..     111     128 ..     109     130 .. 0.75
   3 ?   -3.7   0.0       2.3   1.4e+04      30      42 ..     361     373 ..     359     374 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-06
                 XXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   3 deyrerRrkNreAarrsRekkkakeeeleervkeLeeeNaqLrqkveqLeke 54 
                 +++ +rR++Nr A r +Re+   k + le+ v++L+   +  +qk++ Lek+
  CCD22993.1  57 ESSAKRRKQNRDAQRAYRERNANKIQVLEKSVESLQMLVDSWEQKYSLLEKQ 108
                 45556666*****************************************985 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHH CS
      bZIP_2  29 eleervkeLeeeNaqLrq 46 
                 +++ ++ ++ +eN qL+q
  CCD22993.1 111 DNKIELLNVINENLQLKQ 128
                 566777778889999987 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHH CS
      bZIP_2  30 leervkeLeeeNa 42 
                 +e+r  +L++eN+
  CCD22993.1 361 TESRSASLSSENN 373
                 7888889999996 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.77   4.6e+03      47      75 ..      21      49 ..      18      61 .. 0.72
   2 ?   12.6   6.4   2.6e-05      0.15      33      83 ..      61     111 ..      53     116 .. 0.93
   3 ?   -2.9   0.1       1.7   9.9e+03      60      75 ..     365     380 ..     348     386 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.77
    bZIP_Maf 47 krrlqqkeelekekeeleeelerlqqels 75
                +++  + ++  + ++++ +++++l++  +
  CCD22993.1 21 SKQAANNHDSSDTDSSTDTRVSNLANHSE 49
                57777888888888888888888877654 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.6e-05
    bZIP_Maf  33 RRrlKNrgyakscrkrrlqqkeelekekeeleeelerlqqelsrlrqekda 83 
                  Rr++Nr +++  r+r  ++ + lek+ e+l+  +++ +q++s+l+++ ++
  CCD22993.1  61 KRRKQNRDAQRAYRERNANKIQVLEKSVESLQMLVDSWEQKYSLLEKQSND 111
                 69*******************************************999766 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.7
    bZIP_Maf  60 keeleeelerlqqels 75 
                  ++l+ e++ + ++++
  CCD22993.1 365 SASLSSENNDSYKRIK 380
                 3333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2190  (0.122148); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 2900.04
//
Query:       CCD22994.1  [L=508]
Description: hypothetical protein NDAI_0A08410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-147  490.2  10.5   3.3e-147  489.8  10.5    1.1  1  Glyco_hydro_72  Glucanosyltransferase
    2.9e-05   23.6   0.3    0.00024   20.6   0.3    2.3  1  Cellulase       Cellulase (glycosyl hydrolase family 5)
  ------ inclusion threshold ------
      0.048   13.9   0.8        5.8    7.2   0.1    2.5  2  Lys             C-type lysozyme/alpha-lactalbumin family
      0.057   13.6   0.1       0.12   12.6   0.1    1.5  1  DUF2653         Protein of unknown function (DUF2653)
       0.22    9.7   6.2       0.31    9.2   6.2    1.1  1  Nop14           Nop14-like family
       0.45    9.9   5.3       0.58    9.5   5.3    1.1  1  SDA1            SDA1
       0.57    9.4   4.5       0.96    8.7   4.5    1.4  1  NOA36           NOA36 protein
        1.3    7.0  13.1        1.9    6.5  13.1    1.1  1  DNA_pol_phi     DNA polymerase phi
        1.5    7.6  16.1        2.4    6.9  16.1    1.2  1  Apt1            Golgi-body localisation protein domain
        5.5    6.5  31.5         12    5.5  31.5    1.5  1  SR-25           Nuclear RNA-splicing-associated protein
        6.9    7.1   7.5         13    6.2   7.5    1.4  1  PBP1_TM         Transmembrane domain of transglycosylase PBP1
        8.8    5.3   8.4         18    4.2   5.9    2.3  3  Pes-10          Pes-10


Domain annotation for each model (and alignments):
>> Glyco_hydro_72  Glucanosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.8  10.5  2.2e-150  3.3e-147       4     315 .]      31     340 ..      28     340 .. 0.98

  Alignments for each domain:
  == domain 1  score: 489.8 bits;  conditional E-value: 2.2e-150
                     XSSTTS--EEEETTEEEETTT-BBE-EEEEE--BE------SSB-GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEE CS
  Glyco_hydro_72   4 aaeeaveaieikgnkffdsksgeqfyikGvdyqpggseevsslvdpladaeaCkrdikllkelgvntvrvyavdnskdhdeCmkalsdagiyvil 98 
                     ++++++ +ieikgn+ff+s+sg++fyi+Gvdyqpggs   s+l+dplad+++Ckrd++++k+lg+nt+rvy+vdns+dh+eCm++l+dagiy+il
      CCD22994.1  31 SSNSTLAPIEIKGNAFFNSESGDRFYIRGVDYQPGGS---SNLTDPLADVDICKRDVPVFKDLGINTIRVYTVDNSLDHEECMQLLADAGIYLIL 122
                     5678899******************************...8****************************************************** PP

                     ES-BTTBS--TTS-..---HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EEEEE---TTTHHH CS
  Glyco_hydro_72  99 dlnepkesinradpassynedllervfkvidafkeyknvlgffaGnevvndksntaasayvkavvrdvkeyikkkkerkiPvGysaaddaelrve 193
                     d+n+p++si+r++pa+syn+d+l++vf++id f++y+nvlgffaGnev+n+k++t++++yvkavvrd+k+yik++++rkiP+Gysaad+ e+r+ 
      CCD22994.1 123 DVNTPDSSISRYNPACSYNADYLQNVFATIDVFAKYDNVLGFFAGNEVINSKNTTNTATYVKAVVRDMKKYIKARDYRKIPIGYSAADIVENRQL 217
                     *********************************************************************************************** PP

                     HHHHTTBTT-...--S-EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE---SSS.S---THHHHHTSHHHHTTEEEEEES-SB--SSS CS
  Glyco_hydro_72 194 laeylaCgdedd.kadffglnmyeWCgkssfktsGydertkefenysiPlflseyGCnkvt.prkftevealyseemtsvfsGGlvyeyseeann 286
                     +aey++Cg++dd ++d+fg+n+y+WCg+ssf tsGy+++++ +++ysiP+flse+GCn+v  +r+fte+ea+ys++m+svfsGGlvyeys+e+nn
      CCD22994.1 218 AAEYFNCGSDDDsRIDMFGVNDYSWCGQSSFVTSGYNTKMQLYKGYSIPIFLSEFGCNEVVsSRPFTEIEAIYSTQMSSVFSGGLVYEYSNETNN 312
                     ********99966*********************************************98659******************************** PP

                     --SEEE-TTS-EEE-THHHHHHHHHHH-- CS
  Glyco_hydro_72 287 yGlvkiddddvkkllkdfenlkseykkis 315
                     yGlv+i++d v+ +l+df nlk+ey+k+s
      CCD22994.1 313 YGLVQINGDTVT-KLDDFVNLKNEYSKVS 340
                     **********99.9************986 PP

>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3   1.6e-07   0.00024      32     248 ..      89     276 ..      81     314 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.6e-07
                 HHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS CS
   Cellulase  32 dagfntvRlpvswgelvenapdykvdenslerveevvkyakenglyvildiHseegwltkadgnssedtaeeffkklwtqiAerykkndevvifelmNE 130
                 d g+nt+R+ +  ++++              + ee +++  ++g+y ild+  +++ + + ++ +s+++  ++++++ +   + ++k+d+v++f   NE
  CCD22994.1  89 DLGINTIRVYTV-DNSL--------------DHEECMQLLADAGIYLILDVNTPDSSISRYNPACSYNA--DYLQNVFAT-IDVFAKYDNVLGFFAGNE 169
                 555555555544.3333..............458999****************8555444444444444..666664443.58999************* PP

                 --STTCTCCTCHHHTTHHHHHHHHHHHHHHHHTTS.SEEEEECHHHHTBHHHHHCTSG...SSSSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHH CS
   Cellulase 131 PhgnntgaewtseeadevkayaeeaikaIRavgpn.rliivegnswsgnldgavlndP...ndsqdnliysvHfYgpsdfaqtefgkdltdktnlaqrl 225
                    ++++    +++a+ vka++  + k I+a +     i    ++  +n + a+  +    +d +   ++ v +Y+     q          +  ++ +
  CCD22994.1 170 VINSKNT----TNTATYVKAVVRDMKKYIKARDYRkIPIGYSAADIVENRQLAAEYFNcgsDDDSRIDMFGVNDYSWCG--QS---------SFVTSGY 253
                 ***6664....578999************99997544455555556666666443322343332444578887877322..33.........3477788 PP

                 HHHHHHHHHTTSEEEEEEEESST CS
   Cellulase 226 edaakylvekgipviigEfGgsn 248
                 +++++ ++   ip++++EfG ++
  CCD22994.1 254 NTKMQLYKGYSIPIFLSEFGCNE 276
                 88888888888888888888654 PP

>> Lys  C-type lysozyme/alpha-lactalbumin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.023        34      19      72 ..     198     251 ..     182     261 .. 0.72
   2 ?    7.2   0.1    0.0039       5.8      32      70 ..     292     330 ..     277     340 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.023
                 TGGGB-HHHHHHHHHHHHTTBTT-EEEETTSEEEETTTTEETTTTSBBSSCTTS CS
         Lys  19 gykgvslaewvClaehesgydtkavvknangstdyGlfqindklwCkdsktpks 72 
                 +y+++ +   +  +  + ++ ++ ++  +++++   +f +nd+ wC +s+  +s
  CCD22994.1 198 DYRKIPIGYSAADIVENRQLAAEYFNCGSDDDSRIDMFGVNDYSWCGQSSFVTS 251
                 555555555555555556666666777778888899**********99987766 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0039
                 HHHHHTTBTT-EEEETTSEEEETTTTEETTTTSBBSSCT CS
         Lys  32 aehesgydtkavvknangstdyGlfqindklwCkdsktp 70 
                 ++ +s +    v + +n+ ++yGl+qin  +  k ++  
  CCD22994.1 292 TQMSSVFSGGLVYEYSNETNNYGLVQINGDTVTKLDDFV 330
                 5667778888787888************88777666555 PP

>> DUF2653  Protein of unknown function (DUF2653)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   7.8e-05      0.12      15      78 ..     137     200 ..     134     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.8e-05
     DUF2653  15 vClyiaekkevkPedveveLsydddtGfsAevtvngrkqvlveanlieairkyleeelnvnpfa 78 
                  C y a+  +   + + v  +yd+  Gf+A  +v + k++ ++a  ++a+ + ++++++++ ++
  CCD22994.1 137 ACSYNADYLQNVFATIDVFAKYDNVLGFFAGNEVINSKNTTNTATYVKAVVRDMKKYIKARDYR 200
                 58888888888888999999***********************************999999887 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.2    0.0002      0.31     372     430 ..     403     473 ..     379     502 .. 0.33

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0002
       Nop14 372 eeeedeeeeedeeeee.eeeededdlsdleseeeeeedeleeel..........leeekkaaeekkekk...............k 430
                 ++++d++++ +++e++ +++  +++ s+ +  eeee++ ++ ++          +                             +
  CCD22994.1 403 DDDDDDDDDYEDDEDSsSSSAVSSSISSSS-TEEEESSSMSSTAnftssvtntaQ-------------VrvtsrsssvisstsaS 473
                 111111111111111101111111111111.122222222111122121111110.............01111222333332220 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.3   0.00039      0.58     134     181 ..     402     462 ..     328     489 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00039
        SDA1 134 desedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekkkk..............k 181
                 d ++d++++++ e+++++ ++++ + + +++++eeee+++ ++++++              +
  CCD22994.1 402 D-DDDDDDDDDYEDDEDSSSSSAVSSSISSSSTEEEESSSMSSTANFtssvtntaqvrvtsR 462
                 2.122222222222222222222222212222222222222222222333333332222220 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.5   0.00064      0.96     267     292 ..     395     420 ..     355     439 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00064
       NOA36 267 ddeddegdedddddddeedddeeedd 292
                 + +++  d+ddddddd+ +dde+   
  CCD22994.1 395 STQNNCYDDDDDDDDDDYEDDEDSSS 420
                 33334334444444333333333322 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  13.1    0.0013       1.9     643     702 ..     402     469 ..     392     484 .. 0.47

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0013
  DNA_pol_phi 643 edeeddeeeeeeddeededse.edddeeesdedeededdedvdeidelreklaealgesg.........e 702
                  +d++dd++++ edde++++s+  +++ ++s+ +ee++++ + +   ++ +++++  +            +
   CCD22994.1 402 DDDDDDDDDDYEDDEDSSSSSaVSSSISSSSTEEEESSSMSSTA--NFTSSVTNTAQVRVtsrsssvisS 469
                  22222222222223333333333333344444444444444444..799999888776655555555541 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  16.1    0.0016       2.4     313     373 ..     399     482 ..     372     493 .. 0.39

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0016
        Apt1 313 s..seeddesdeesessssssssssssassssssssrssslelrlkpt.....................sstssssssesssss 373
                 +  +++dd++d++ e++++sssss  s+s ssss+++++s++++++ +                     ssts s+ss+sssss
  CCD22994.1 399 NcyDDDDDDDDDDYEDDEDSSSSSAVSSSISSSSTEEEESSSMSSTANftssvtntaqvrvtsrsssviSSTSASTSSSSSSSS 482
                 144333333333333333333222222222222222222222222211333344445555543332221111111111111111 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  31.5    0.0078        12      17      87 ..     414     485 ..     396     491 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0078
       SR-25  17 ekkrkksskdssrsssasksqsrkassasekee.erskekkkkkrrrssssssssssssssssssssssssd 87 
                 + + + ss+  s+s s+s++++++ ss+s++++ + s  ++ + r +s sss  ss+s+s ssssssssss 
  CCD22994.1 414 DDEDSSSSSAVSSSISSSSTEEEESSSMSSTANfTSSVTNTAQVRVTSRSSSVISSTSASTSSSSSSSSSSR 485
                 344455666666777777777777777777666544444444444445555555555555555555555543 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.5    0.0089        13      33      56 ..     399     419 ..     392     439 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0089
     PBP1_TM  33 ddyddeyddeedDdddddeeeevp 56 
                 + ydd+ dd   Dddd++++e+++
  CCD22994.1 399 NCYDDDDDD---DDDDYEDDEDSS 419
                 446773233...333333333322 PP

>> Pes-10  Pes-10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.6   2.3e+03     315     346 ..     169     199 ..     164     206 .. 0.82
   2 ?    0.5   0.0      0.17   2.5e+02     262     307 ..     251     296 ..     237     338 .. 0.81
   3 ?    4.2   5.9     0.012        18     183     232 ..     402     449 ..     388     477 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.6
      Pes-10 315 eflkylessneeevsdsvlevlaeylkngddy 346
                 e++++ +++n  +  + v+  +++y+k + dy
  CCD22994.1 169 EVINSKNTTNTATYVKAVVRDMKKYIK-ARDY 199
                 778888899999999999999999999.4665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.17
      Pes-10 262 sefelplelyrKYeIqrlilelgvhnedaeeLldqieeleeeelaq 307
                 s  + +++ly+ Y I   + e+g ++   +  + +ie + ++++++
  CCD22994.1 251 SGYNTKMQLYKGYSIPIFLSEFGCNEVVSSRPFTEIEAIYSTQMSS 296
                 66778899******************************99999986 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.012
      Pes-10 183 dseeddddiededeedessss.tdsgiesedeElveereeeeeeeaerlea 232
                 d ++dddd + ed+ed+ssss + s i s ++E   e+e+  + ++++++ 
  CCD22994.1 402 DDDDDDDDDDYEDDEDSSSSSaVSSSISSSSTE---EEESSSMSSTANFTS 449
                 344444555566666665554178889999999...555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1658  (0.0924759); expected 358.6 (0.02)
Passed bias filter:                      739  (0.0412181); expected 358.6 (0.02)
Passed Vit filter:                       158  (0.00881254); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.43
# Mc/sec: 3551.99
//
Query:       CCD22995.1  [L=749]
Description: hypothetical protein NDAI_0A08420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.2e-104  346.9   9.8   8.2e-104  346.9   9.8    2.4  2  Pet127    Mitochondrial protein Pet127
  ------ inclusion threshold ------
       0.15   12.2   1.8       0.57   10.3   0.4    2.7  3  MRP-L47   Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
       0.19   11.8   0.9       0.54   10.4   0.2    2.2  2  RBD       Raf-like Ras-binding domain
        1.9    8.3   9.7      0.063   13.1   1.0    2.7  3  RB_A      Retinoblastoma-associated protein A domain


Domain annotation for each model (and alignments):
>> Pet127  Mitochondrial protein Pet127
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  346.9   9.8  1.8e-107  8.2e-104       1     274 []     187     483 ..     187     483 .. 0.97
   2 ?   -2.9   0.1       0.8   3.6e+03      77      90 ..     662     675 ..     631     728 .. 0.49

  Alignments for each domain:
  == domain 1  score: 346.9 bits;  conditional E-value: 1.8e-107
      Pet127   1 fvtsskdkeLlelakeekkkyvsStSsltsvLsqlylllsnfrklnl..sslskafeekskkftklarlpasvilrk.kekvyaidsdksldkeiiLsa 96 
                 f+t+++d++Ll++a++++kky+sStSs+tsvLs+l++llsnfrkln+  ss+sk+f++k+++ft++a++pas+ilrk +++vy+idsd+sld+eiiLs 
  CCD22995.1 187 FITPHRDQALLTMATKFNKKYMSSTSSMTSVLSHLHFLLSNFRKLNIvdSSISKHFPQKDCNFTRGAQFPASIILRKmSDTVYSIDSDRSLDREIILSI 285
                 89********************************************98899**************************669******************* PP

      Pet127  97 lGkslEklLtleeeefekylkkeksekakeeekkeaYnysklgkfllrsqLDcydprlpgtgvFdlKtRavvaiRydleeveke...tgyeikklkgef 192
                 lG+slE++Ltl++++                   e+Y+ysk+++f+lrsqLD+y+++lpgtgvFdlKtRav+aiR+dl+ ve++   tgy+i+k +g +
  CCD22995.1 286 LGHSLEEFLTLQKDKDL----------------PESYHYSKIDDFILRSQLDAYNDKLPGTGVFDLKTRAVTAIRHDLSYVENNnnfTGYDINKIYGVY 368
                 **********9877543................258********************************************99998899*********** PP

      Pet127 193 eSferEyydlirsalLKYslQariGqmdGifvaYHnikrifGfqYlpleeldkvlfg.................................eeelaskla 258
                 eS+erE+++lirs+lLKYslQariG+mdGifvaYHni++ifGfqYlplee+d+++++                                 ++e+a+++a
  CCD22995.1 369 ESLEREFFELIRSTLLKYSLQARIGKMDGIFVAYHNISKIFGFQYLPLEEMDYLIHSsctgnfrnkiksrekvmkgiyghsefivkhqrqDREIATEVA 467
                 *****************************************************************************************9999****** PP

      Pet127 259 dkeFklslelleklld 274
                 +keFk+s+ l++++l+
  CCD22995.1 468 EKEFKMSIVLFKNILN 483
                 **************96 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.8
      Pet127  77 ekvyaidsdksldk 90 
                 ek+ +++++++ld 
  CCD22995.1 662 EKLSSLEQQSNLDD 675
                 23333333333333 PP

>> MRP-L47  Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.83   3.7e+03      31      50 ..      46      65 ..      34      76 .. 0.73
   2 ?   -3.9   0.0       3.4   1.5e+04      48      64 ..     194     210 ..     185     215 .. 0.69
   3 ?   10.3   0.4   0.00013      0.57      34      83 ..     650     702 ..     636     705 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.83
     MRP-L47 31 ksfedLhklwyvllkekNmL 50
                  ++ L++     lkekN L
  CCD22995.1 46 DGINSLVSQVSKSLKEKNTL 65
                55555666566678999987 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.4
     MRP-L47  48 NmLlteeeellrkqekm 64 
                   Llt+  + ++k ++ 
  CCD22995.1 194 QALLTMATKFNKKYMSS 210
                 45779999999887764 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00013
     MRP-L47  34 edLhklwyvllkekNmLlteeeellrkqekmpsperlkkvkesM...eniktV 83 
                 e L++ + ++l ek   l ++++l + +++++s e ++++++ M   +ni++V
  CCD22995.1 650 EKLKQFYISCLNEKLSSLEQQSNLDDTMLVDQSTEVSERIEKFMnkgKNIEKV 702
                 789***********9999************77776666666666111566665 PP

>> RBD  Raf-like Ras-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00012      0.54      25      49 ..     484     508 ..     479     516 .. 0.85
   2 ?   -3.7   0.0       2.9   1.3e+04      43      63 ..     649     669 ..     639     670 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
         RBD  25 aLekalkkRglnpsacaVylkgsek 49 
                  ++k lkkR+ln ++c++ lk  +k
  CCD22995.1 484 HIQKTLKKRNLNWQKCKIMLKTESK 508
                 589*****************99744 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.9
         RBD  43 ylkgsekepldwdtdissLeg 63 
                   k ++ ++  +++ +ssLe 
  CCD22995.1 649 SEKLKQFYISCLNEKLSSLEQ 669
                 444447888889999999986 PP

>> RB_A  Retinoblastoma-associated protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.1     5e+03      11      56 ..      53      96 ..      47     119 .. 0.56
   2 ?   13.1   1.0   1.4e-05     0.063      31     111 ..     422     504 ..     406     516 .. 0.76
   3 ?   -0.7   0.3      0.23     1e+03      25      61 ..     649     685 ..     641     726 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
        RB_A 11 sqLrellsslsdepsekLlelfksctedpteeiekrvkelsekflk 56
                sq+++ l++ ++ p +++l+ +k    + +++i++++++ +e+ +k
  CCD22995.1 53 SQVSKSLKEKNTLPIDDILTTVKT--FSLIKDIRTEARRQKEITKK 96
                455555555555555555444443..33445555555555555444 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.4e-05
        RB_A  31 lfks.ctedpteeiekrvkelsekflkkyaesseeeessslaeelakkrlklaekLYykvLesilksEkkr.lsskdlsklls 111
                 l+ s ct +  ++i++r k ++ +  ++    +++++ + +a+e+a+k +k++++L+ ++L++i k  kkr l+ ++ + +l+
  CCD22995.1 422 LIHSsCTGNFRNKIKSREKVMKGIYGHSEFIVKHQRQDREIATEVAEKEFKMSIVLFKNILNHIQKTLKKRnLNWQKCKIMLK 504
                 4444499999999*999999999998844444444447889************************999988344444555555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.23
        RB_A  25 sekLlelfksctedpteeiekrvkelsekflkkyaes 61 
                 sekL++++ sc ++ ++++e++ +    +++++ +e 
  CCD22995.1 649 SEKLKQFYISCLNEKLSSLEQQSNLDDTMLVDQSTEV 685
                 5555555555555555555554443333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1110  (0.0619109); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4993.14
//
Query:       CCD22996.1  [L=205]
Description: hypothetical protein NDAI_0A08430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-35  122.5   0.0    2.1e-35  122.3   0.0    1.1  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD
  ------ inclusion threshold ------
      0.019   15.1   0.0      0.038   14.2   0.0    1.5  1  CRAL_TRIO_N  CRAL/TRIO, N-terminal domain


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.0   2.3e-39   2.1e-35       3     182 .]      26     198 ..      24     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 2.3e-39
  EMP24_GP25L   3 tfklpageekCfyeelkk.gtlltgsyqvtdggaaldvdlsvkdpdgngerlvkkkdresegdfsftakesgeykvCfdnsfstksskkvsfdievgs 99 
                   +++pa++++C+y++++k +++l++syqv  gg +++++++++  +++ge+lv +k ++ + df  ++ + g y++Cfdn f    +kkv+f +e+++
   CCD22996.1  26 AVTIPARGKECLYYDMQKdDDVLVVSYQVLTGG-DFEINFQIT--SPDGEQLVDEKRKKYS-DFLLKSFGLGPYEFCFDNGFDGI-EKKVEFTLELEN 118
                  5789**************9**************.8********..5555******666655.******************98876.6*********76 PP

  EMP24_GP25L 100 easdykdsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyLkrfFk 182
                  ++    ++ ++e+    +++++++++++d+i + +kylr+re r++ t+est sr+ w s+l + ++++++++q +++  fFk
   CCD22996.1 119 NV---LKAETNEEDMMANNSIEEIDRNIDKISKMLKYLRAREWRNMYTVESTKSRLRWLSLLDMSLMAGISCIQAIIIELFFK 198
                  54...33445555556899***************************************************************7 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.2e-06     0.038      19      43 ..     128     158 ..     102     171 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.2e-06
  CRAL_TRIO_N  19 eekfW.ltredhdda.....clLRfLRArkw 43 
                  e  +   + e++d++      +L++LRAr+w
   CCD22996.1 128 EDMMAnNSIEEIDRNidkisKMLKYLRAREW 158
                  4444455555555556667789********* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1256  (0.0700541); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1535.60
//
Query:       CCD22997.1  [L=902]
Description: hypothetical protein NDAI_0A08440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.6e-169  562.1  22.7     3e-160  533.7  14.5    2.2  2  B56       Protein phosphatase 2A regulatory B subunit (B56 fa


Domain annotation for each model (and alignments):
>> B56  Protein phosphatase 2A regulatory B subunit (B56 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  533.7  14.5  1.7e-164    3e-160       1     357 [.     340     691 ..     340     693 .. 0.98
   2 !   33.2   1.1   1.5e-12   2.7e-08     330     413 ..     725     807 ..     712     808 .. 0.86

  Alignments for each domain:
  == domain 1  score: 533.7 bits;  conditional E-value: 1.7e-164
         B56   1 lpslkdvppeereelflkklkqCsvvfdFndpssdlkekeiKretLkelveyvsnnrkkslkilteevyeeivkmisaNlfRplppsksnlldeaadpe 99 
                 lp++++v+peer +lf+ k++qC+++fdFndps d + keiKr tL+el+e++ +nr      +t+e+y+++v+m+++NlfRp+pp + n++ + +dp+
  CCD22997.1 340 LPNFDEVSPEERISLFIAKVNQCNTMFDFNDPSFDIQGKEIKRITLQELIEFIVTNRF----QYTNEMYSHVVNMFKINLFRPIPP-PVNPVGDIYDPD 433
                 799****************************************************999....9**********************7.777764447*** PP

         B56 100 edepvlepawpHlqlvYeillrfvespefdakvakkyidqsFvlkllelfdseDprERdylktilhriygkfldlrsfirkainniflrfiyeterhng 198
                 edepv e awpH+ql+Ye++lrfvesp+f++++ak+yidq+F+lkllelfdseD rERd+lkt+lhriygkfl+lrsfir++innifl+f yeter+ng
  CCD22997.1 434 EDEPVNELAWPHMQLIYEFFLRFVESPDFNHQIAKQYIDQNFILKLLELFDSEDIRERDCLKTTLHRIYGKFLSLRSFIRRSINNIFLQFTYETERFNG 532
                 *************************************************************************************************** PP

         B56 199 iaelLeilgsiingfalplkeehkkflervllpLhkvkslslyhqqLaycvvqfiekdpklaeevikgllkyWPitnsqKevlFLneleeileviepee 297
                 iaelLeilgsiingfalplkeehk fl r+l+pLhkv++lslyh+qLayc+vqf+ek+p l+eev++gll+yWP+ ns+Ke++FLne+e+i+eviep e
  CCD22997.1 533 IAELLEILGSIINGFALPLKEEHKVFLVRILIPLHKVRCLSLYHPQLAYCIVQFLEKEPLLTEEVVMGLLRYWPKVNSTKEIMFLNEIEDIFEVIEPLE 631
                 *************************************************************************************************** PP

         B56 298 fqkilkplfkrlakcissphfqVaeralylwnnekivnlisenseeilpilfpaleknsk 357
                 f k+ +plf +lakciss+hfqVae++l +wnne+++nl  en+e+ilpi+fp+l++ ++
  CCD22997.1 632 FIKVEVPLFVQLAKCISSSHFQVAEKVLSYWNNEYFLNLCIENAEVILPIIFPSLYELTS 691
                 ********************************************************9765 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 1.5e-12
         B56 330 nekivnlisenseeilpilfpaleknskkHWnktvrglalnvlkllmeldpelfdecaakykeekekekekkkkreekWkkiee 413
                 +++   + s+n++ + p+++ +   ns   Wn++++ +a+++lk++ e++p l+++c+a y ++ ++++++k +re++Wkk+ee
  CCD22997.1 725 QDENGGINSNNTNLCDPYMLVEQAINSG-SWNRAIHAMAFKALKIFLETNPVLYENCNALYLSSIKETANRKIQREQNWKKLEE 807
                 5555556677778888887776666655.8****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2595  (0.144738); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                       173  (0.00964917); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.76u 0.38s 00:00:02.14 Elapsed: 00:00:00.62
# Mc/sec: 4384.19
//
Query:       CCD22998.1  [L=1119]
Description: hypothetical protein NDAI_0A08450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-19   69.2  13.3    6.5e-19   69.2  13.3    5.0  4  AAA_23           AAA domain
    1.4e-13   50.8  35.1      5e-13   49.0  35.1    2.0  1  SMC_N            RecF/RecN/SMC N terminal domain
    0.00011   21.9   0.0    0.00023   20.8   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
     0.0026   17.6  49.1     0.0026   17.6  49.1    4.2  3  AAA_15           AAA ATPase domain
  ------ inclusion threshold ------
      0.023   14.5   0.2      0.023   14.5   0.2    4.2  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.027   15.0   0.0      0.027   15.0   0.0    5.2  4  ABC_tran         ABC transporter
      0.095   12.3   0.0       0.25   10.9   0.0    1.7  1  AAA_25           AAA domain
       0.16   12.1  24.1       0.18   12.0   5.5    4.9  4  Cob_adeno_trans  Cobalamin adenosyltransferase
       0.18   11.4   0.0       0.18   11.4   0.0    3.2  3  AAA_27           AAA domain
        9.7    4.6   5.7          2    6.9   1.9    1.7  2  FUSC             Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2  13.3   3.6e-22   6.5e-19       1     196 [.      54     284 ..      54     295 .. 0.67
   2 ?  -10.1  26.2        10   1.8e+04      59     176 ..     312     465 ..     301     479 .. 0.52
   3 ?   -6.2  24.7        10   1.8e+04      88     199 ..     646     756 ..     615     789 .. 0.52
   4 ?  -10.7  18.7        10   1.8e+04     140     193 ..     816     883 ..     758     966 .. 0.40

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 3.6e-22
      AAA_23   1 kLkienfrsfrdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrks......grgfeksdveiesegkvkayvelt.fenkdgry...... 86 
                 k+k+enf  ++ +e+++s+ l+ I+GpNG+GK+T+++A +l+L g+++  +r++      ++g  +s++ei+ + +v++  +l+ f+n+++++      
  CCD22998.1  54 KIKLENFVTYKLTEFNLSPSLNMIIGPNGSGKSTFVCAACLGLAGKPEYIGRSKrvddyiKNGEDRSKIEIFLK-NVESMDKLKnFNNNNNKNnnngaq 151
                 79********************************************9999887766676666666777776665.333333333555555554566667 PP

      AAA_23  87 .......trsiererelskkkgkttkkaklelleideleqfisellgskkiil.nlilflgqerfeefelkdkke...............rleelekel 162
                         + i+++r   ++k+k+ +  + + +++ +     ++l++   i+l nl++fl qer eef++ +  +                leel+  +
  CCD22998.1 152 vdlkcgqLDLIKFTRIIHRDKKKSDYYINDKPVSELTV----KNLVKALSIQLdNLCQFLSQERVEEFARLKSDKllvetvrsidpnlldILEELKVLQ 246
                 88887776667777777766665555555555555544....4455555778889*********99999955555567777777776666444444444 PP

      AAA_23 163 eeledekkllekl....eqekekekeleeleeeleeil 196
                 +e+++++++le +     ++ +++ +le+  + l+e +
  CCD22998.1 247 NEEQTVEDELEIKqkryTELCNERTKLEASVQSLKEFE 284
                 44444444444333335455555556666655555554 PP

  == domain 2  score: -10.1 bits;  conditional E-value: 10
      AAA_23  59 eksdveiese......gkvkayveltfenkdgrytrsiererelskkkgkttkkaklellei..deleqfisellgskkiilnlilflgqerfeefelk 149
                 +k+d+ei+++      +++k++v+ ++e + +    +i +++ ++++  ++ k+a  + +e   + +e +++++ ++++ +++   +++q    + el+
  CCD22998.1 312 FKGDYEIAKRnlrdlmKDKKPFVKTKLEIEENL--NEIAEDKRTNETALESSKDALSKTVENlnAIRESIVKKQSQISYYQSRTKKLQQQILSTKSELE 408
                 456666666666677777777777776666552..2343333333333333333333333333333333333333333335555555555554444444 PP

      AAA_23 150 dkke...........rleelekeleeledekkllekl...................e 176
                 ++++             +e+ k+ eel +e+ +++++                   +
  CCD22998.1 409 RQQSlfdsmtppeisLFDEFDKKREELINEDLKINDQliaiknkgsqnnheigmltK 465
                 444477788888898888888888888888888888876554333333322222222 PP

  == domain 3  score: -6.2 bits;  conditional E-value: 10
      AAA_23  88 rsiererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefelkdkkerleelekeleeledekkllekl.eqekekekel 185
                 r+++ +++++ k++++++ ++ ++++  ++  + +e+ ++ +++++ +  l +er+ +f  ++ +++  ele +l+++++e  ++ ++ ++++++++++
  CCD22998.1 646 RQLTIRQSNYTKQTSSIDSNIYSNTRNYQSSVMSDEQKDRINKEIDEFKTLIKERQSKF--ETLSNERSELEHQLRQIQNETAKVTQKgQELNQQRERY 742
                 34444444444444444444444444433333333333322223322222223333222..34455666666666666555544444445555566655 PP

      AAA_23 186 eeleeeleeilkel 199
                 +  + ++++++ +l
  CCD22998.1 743 TMTQTTIQTLETKL 756
                 55555555555544 PP

  == domain 4  score: -10.7 bits;  conditional E-value: 10
      AAA_23 140 qer.............feefelkdkkerleelekeleeledekkllekleqekekek....eleeleeele 193
                 +++                 ++ + k++ e+ ++++ el+++ +   +l q+k++ +    +l+e  e+ +
  CCD22998.1 816 AKNkditmkdvvgffdD---KERELKDEYESKRRSFTELKETSEYHTWLRQIKSYDEptrdKLNEYAEKYQ 883
                 22222222222222110...112223333333333333333333333333333333322221111111111 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0  35.1   2.8e-16     5e-13       2     196 ..      52    1075 ..      51    1090 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 2.8e-16
                  EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--..BTTCSSTTEEEEEEEE............. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx............. RF
       SMC_N    2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..skekasvkkaeveitf............. 83  
                  + ++++enF +y  k ++ ++s+s+++i+GpNGSGKs ++ A +  L  +     rs++++d i++     +      ++ei++             
  CCD22998.1   52 IVKIKLENFVTY--KLTEFNLSPSLNMIIGPNGSGKSTFVCAACLGLAGKPEYIGRSKRVDDYIKNgeD--R-----SKIEIFLknvesmdklknfn 139 
                  789*********..799**************************777766677678**********9432..2.....22222222223334555555 PP

                  ..EETTEE.........SSSSSSC.EEEEEEEETTSE.EEEEETTEEE-HHHHHHHHHCTT-STT................................ CS
                  ..xxxxxx.........xxxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx................................ RF
       SMC_N   84 ..dnedkk.........lkiekee.vsisrrvkrkge.seykingkevtkkevsellesagiske................................ 135 
                    +   +k         lk  + + ++ +r + r+++ s+y+in+k v++  v++l++   i+ +                                
  CCD22998.1  140 nnN---NKnnnngaqvdLKCGQLDlIKFTRIIHRDKKkSDYYINDKPVSELTVKNLVKALSIQLDnlcqflsqerveefarlksdkllvetvrsidp 233 
                  441...33345666655333332248888988887766*********************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD22998.1  234 nlldileelkvlqneeqtvedeleikqkrytelcnertkleasvqslkefenkkleieyhnkllpyvmikdhreklqkfkgdyeiakrnlrdlmkdk 330 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD22998.1  331 kpfvktkleieenlneiaedkrtnetalesskdalsktvenlnairesivkkqsqisyyqsrtkklqqqilstkselerqqslfdsmtppeislfde 427 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD22998.1  428 fdkkreelinedlkindqliaiknkgsqnnheigmltkkienkkksftgtdkigvlmrnsrptdiynavlyireipemkgkvlepplisvsaknpqf 524 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD22998.1  525 asyldqcidrntsqaltlidsdsyerfsddilkrfrvnlreledidltppvprnqlqefgfegylsdfltgdknvikmlcqinklhtipvsrreltp 621 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD22998.1  622 sqlerlllpdqngrimfskiihgrrqltirqsnytkqtssidsniysntrnyqssvmsdeqkdrinkeidefktlikerqskfetlsnerselehql 718 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD22998.1  719 rqiqnetakvtqkgqelnqqrerytmtqttiqtletkldelkrdarkdvsqhihvvekkiaqeleqqtklladmvsmlkkvdidqkelirldiayfe 815 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD22998.1  816 aknkditmkdvvgffddkerelkdeyeskrrsftelketseyhtwlrqiksydeptrdklneyaekyqnqdtfnveyitdiierleseisminhdas 912 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD22998.1  913 sitilkkveteineleqtlptmtsglattkekikqnrlelepgldsmiskiskqfallfnnvgsagavnlekphrfadwkveimvkfrdnatlkkld 1009
                  ************************************************************************************************* PP

                  ..CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHH...CTTSEEEEE- CS
                  ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
       SMC_N  136 ..lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkek...sknaQfivis 196 
                    + SgGe++++ +  ++A+q++  ap+ ++Dei++ +D +n ++v + + e+   ++++Q++ i+
  CCD22998.1 1010 shTQSGGERAVSTVLYMIALQEFTAAPFRVVDEINQGMDSRNERIVHKAMVENacaENTSQYFLIT 1075
                  **9*******************************************98665431214569999988 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.3e-07   0.00023       3      42 ..      54      92 ..      52     101 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.3e-07
      AAA_29  3 rlqlvNWgtfdghtieidlkgatlltGpsGsGKSTllDAi 42
                +++l N  t++ ++++++++   +++Gp+GsGKST++ A 
  CCD22998.1 54 KIKLENFVTYKLTEFNLSPSL-NMIIGPNGSGKSTFVCAA 92
                788999999999999999885.**************9765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6  49.1   1.4e-06    0.0026       3     317 ..      52     472 ..      51     493 .. 0.79
   2 ?   -2.2  18.0       1.4   2.5e+03     144     270 ..     657     777 ..     641     794 .. 0.58
   3 ?   -6.9  19.3        10   1.8e+04      70     288 ..     800     965 ..     775     984 .. 0.37

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.4e-06
      AAA_15   3 IkkikikNFRslkdveidlseeltvliGkNnsGKSsilealdlFlnnkekkn..........................kkvikiekedleifenisesk 75 
                 I kik++NF  +k +e +ls++l+ +iG+N+sGKS+++ a  l l  k ++                           ++ +k+++ + ++++n+++  
  CCD22998.1  52 IVKIKLENFVTYKLTEFNLSPSLNMIIGPNGSGKSTFVCAACLGLAGKPEYIgrskrvddyikngedrskieiflknvESMDKLKNFNNNNNKNNNNGA 150
                 88**************************************99999999555578888999999*************99888999999999999999999 PP

      AAA_15  76 dikIdvef.......................................................................................aeke 87 
                 ++++++                                                                                         +  +
  CCD22998.1 151 QVDLKCGQldlikftriihrdkkksdyyindkpvseltvknlvkalsiqldnlcqflsqerveefarlksdkllvetvrsidpnlldileelkvlQ--N 247
                 999999999***********************************************************9999999999999999999887665441..4 PP

      AAA_15  88 kakeyektlkskekkkadlllkk.kesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikkleeslkkeee 185
                 ++++ e++l+ k+k++++l  ++ k ++ ++ +k+++ k  ++e+ ++   + ++       k  +ekl+k k +++i k +l++l k+ +  +k + e
  CCD22998.1 248 EEQTVEDELEIKQKRYTELCNERtKLEASVQSLKEFENKKLEIEYHNKLLPYVMI-------KDHREKLQKFKGDYEIAKRNLRDLMKDKKPFVKTKLE 339
                 4444444444444444442222202222223333333333333344444443333.......444666677777888999999999999999999999* PP

      AAA_15 186 lknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekl......eeelteklkeiqeklkeidkklaeelk..kilkkkidkikkfny 276
                 ++++l++ +++ ++++   ++s++   k+ ++l+++ e+i+++ +q         +++l++++ +++++l+ +++ +++ +    +l++ +dk      
  CCD22998.1 340 IEENLNEIAEDKRTNETALESSKDALSKTVENLNAIRESIVKKQSQ--IsyyqsrTKKLQQQILSTKSELERQQSLFDSMTPpeISLFDEFDK------ 430
                 ****************************************997555..355999999999999999999999999996666665334444444...... PP

      AAA_15 277 kgkkneeieik.ddeelplnknGsGvqrllllillileaekk 317
                 k+++  + ++k +d+ + ++++Gs  +  + ++++++e++kk
  CCD22998.1 431 KREELINEDLKiNDQLIAIKNKGSQNNHEIGMLTKKIENKKK 472
                 444444444446899999999999999999999999999998 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
      AAA_15 144 kkelpkekeeklekekeelkidkedlkklikkleeslkkeeelknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekleeeltekl 242
                 k+   + ++ +++++++  ++ ++++k+ i+k +  +      k ++k+ + k+++ s++R+  + +  ++++   k+++k  e + q +   +++  +
  CCD22998.1 657 KQTSSIDSNIYSNTRNYQSSVMSDEQKDRINKEIDEF------KTLIKERQSKFETLSNERSELEHQLRQIQNETAKVTQKGQELNQQRERYTMTQTTI 749
                 3444444555556666666666555555555444444......45557777777777777777777777777777777777766544444466666777 PP

      AAA_15 243 keiqeklkeidkklaeelk...kilkkkidk 270
                 + +++kl+e++ +  ++ +          +k
  CCD22998.1 750 QTLETKLDELKRDARKDVSqhiH---VVEKK 777
                 77777777777666666663332...22222 PP

  == domain 3  score: -6.9 bits;  conditional E-value: 10
      AAA_15  70 niseskdikIdvefaekekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidked 168
                 +i+ +  i++d+ +                                                       ++ k+k +  k    + + ++ elk + e+
  CCD22998.1 800 DIDQKELIRLDIAY-------------------------------------------------------FEAKNKDITMKDVVGFFDDKERELKDEYES 843
                 33333333333333.......................................................333333333333333333333333333333 PP

      AAA_15 169 lkklikkleeslkkee.........elknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklae 258
                 +++   +l+e  +++          e      +++   +  +++ +++ e  + + + l++ ++ i++       + +++ +lk+++++++e++++l +
  CCD22998.1 844 KRRSFTELKETSEYHTwlrqiksydEPTRDKLNEY--AEKYQNQDTFNVEYITDIIERLESEISMINH-------DASSITILKKVETEINELEQTLPT 933
                 33333333333333331111111111111111111..1111222233333333333333333333333.......233444444444444444444433 PP

      AAA_15 259 elk..kilkkkidkikkfnykgkkneeieikd 288
                  ++   + k+ki++   +  +g ++   +i+ 
  CCD22998.1 934 MTSglATTKEKIKQNRLELEPGLDSMISKISK 965
                 33344333333443333333333333333333 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   1.3e-05     0.023       1      15 [.      74      88 ..      74      92 .. 0.92
   2 ?   -1.4   0.3      0.91   1.6e+03     156     156 ..     342     342 ..     191     455 .. 0.64
   3 ?    0.7   0.6      0.21   3.7e+02      92     152 ..     621     681 ..     614     770 .. 0.68
   4 ?    1.0   1.4      0.17     3e+02     104     296 ..     880    1075 ..     798    1079 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
      AAA_21  1 lnvliGpNgsGKSnL 15
                ln++iGpNgsGKS++
  CCD22998.1 74 LNMIIGPNGSGKSTF 88
                79***********97 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.91
      AAA_21 156 l 156
                 +
  CCD22998.1 342 E 342
                 2 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.21
      AAA_21  92 tllesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsraw 152
                 + ++ +lll++++ + +  ++  +r++  ++++++ k+ s +++n++ + +++ +++   +
  CCD22998.1 621 PSQLERLLLPDQNGRIMFSKIIHGRRQLTIRQSNYTKQTSSIDSNIYSNTRNYQSSVMSDE 681
                 5667788888888888888888999999999999999999999888888887777654443 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.17
      AAA_21  104 sleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslklveiels 200 
                   +++  +++++++ ++++++ +s+++ +  ++++    k     +++++++l+ + +++  +      ++++  ++ +  ++++ ++++ l ++++ 
  CCD22998.1  880 EKYQNQDTFNVEYITDIIERLESEISMINHDASSITILKKVETEINELEQTLPTMTSGLA-TTKEKIKQNRLELEPGLDSMISKISKQFALLFNNVG 975 
                  233334444444444444444444444444444444444444444444444444444444.333333333333333333334444444444444444 PP

      AAA_21  201 dlgegeeliasvderlrer.gvvflengdgqelparelSdGtkrllalltallralkkg.sllliDEpEngLHPkllrrllell..kelsrngaQvi 293 
                    g+++ +   ++ +++ +  v f +n   ++l+++  S G + +  +l +++ +   + ++ ++DE+  g++ +  r + + +  +++++n +Q +
  CCD22998.1  976 SAGAVNLEKPHRFADWKVEiMVKFRDNATLKKLDSHTQSGGERAVSTVLYMIALQEFTAaPFRVVDEINQGMDSRNERIVHKAMveNACAENTSQYF 1072
                  4444444444444444444777777888888888888888888887555555554444468888888888888877777777777888888888887 PP

      AAA_21  294 ltT 296 
                  l T
  CCD22998.1 1073 LIT 1075
                  776 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.5e-05     0.027      15      80 ..      76     147 ..      65     201 .. 0.67
   2 ?   -0.8   6.4       1.1     2e+03      28     127 ..     242     383 ..     241     388 .. 0.79
   3 ?   -7.1  10.0        10   1.8e+04      46      70 ..     711     735 ..     624     844 .. 0.62
   4 ?    1.9   0.1      0.17     3e+02      39     115 ..     901    1019 ..     858    1043 .. 0.51

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
                 EEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......x RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......e 80 
                  i+G+nG+GKSt++ + +  l  + + i   ++  ++++  + r++i+++ ++ +  ++l++ +n      +
  CCD22998.1  76 MIIGPNGSGKSTFVCAACLGLAGKPEYIGRSKRVDDYIKNGEDRSKIEIFLKNVESMDKLKNFNNnnnknnN 147
                 79**********999888888888888844444444477777777777777776666666655554544442 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.1
                 HHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH.......................................HHHTCH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................xxxxxx RF
    ABC_tran  28 lkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren.......................................esdeei 85 
                 lk+l ++++  e+e+++++k  +e  +e+++l+++++ l++ ++ + e++ +++                                       + + ei
  CCD22998.1 242 LKVLQNEEQTVEDELEIKQKRYTElcNERTKLEASVQSLKEFENKKLEIEYHNKllpyvmikdhreklqkfkgdyeiakrnlrdlmkdkkpfvKTKLEI 340
                 78999999999****999999999898888899999999888777777766666999999999999999999999988888888877777777666668 PP

                 HHHHHHSTTGG.TTCBGESTTSGGS-HHHHHHHHHHHHHHHTS CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  86 ekalsklglke.lkdtvvksspssLSgGqkqrvalarallkkp 127
                 e+ l+++  ++ +++t ++ss+  LS+      a+ ++++kk+
  CCD22998.1 341 EENLNEIAEDKrTNETALESSKDALSKTVENLNAIRESIVKKQ 383
                 8888887655536666777777999998888888888887765 PP

  == domain 3  score: -7.1 bits;  conditional E-value: 10
                 TCEGGGB-HHHCCHCEEEE-SS.--S CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxx RF
    ABC_tran  46 gkdlkeqeleslrkeigvlpqe.pql 70 
                   +l++ +l++ ++e + ++q+ ++l
  CCD22998.1 711 RSELEH-QLRQIQNETAKVTQKgQEL 735
                 333333.4444445555555543222 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.17
                  EEEEEETTCEGGG.B-HHHCCHCEEEE-SS.--S-TTSBHHHH...........................................HHHTCHHHHHH CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxxxx...........................................xxxxxxxxxxx RF
    ABC_tran   39 eGeilldgkdlke.qeleslrkeigvlpqe.pqlfpeltvren...........................................esdeeiekals 90  
                  e ei + ++d ++ + l++++ ei  l+q+ p++ ++l                                                e          
  CCD22998.1  901 ESEISMINHDASSiTILKKVETEINELEQTlPTMTSGL----AttkekikqnrlelepgldsmiskiskqfallfnnvgsagavnlE---------- 983 
                  33333333333333444555555555555544444444....033345776677777766666664444444444444444444443.......... PP

                  HSTTGG...............TTCBGESTTS.GGS-HHHHH CS
                  xxxxxx...............xxxxxxxxxx.xxxxxxxxx RF
    ABC_tran   91 klglke...............lkdtvvkssp.ssLSgGqkq 115 
                       +                ++ ++k+ + ++ SgG++ 
  CCD22998.1  984 -----KphrfadwkveimvkfRDNATLKKLDsHTQSGGERA 1019
                  .....044444444444444233333333334777888876 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014      0.25      34      62 ..      73     100 ..      68     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
      AAA_25  34 elallaGapgtGKttlaldlalavatGkp 62 
                 +l++++G+ g+GK+t+++  +l +a Gkp
  CCD22998.1  73 SLNMIIGPNGSGKSTFVCAACLGLA-GKP 100
                 6889******************999.554 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.4     0.078   1.4e+02      50     108 ..     221     283 ..     144     292 .. 0.78
   2 ?    2.0   0.6      0.11     2e+02      53     116 ..     340     407 ..     312     418 .. 0.61
   3 ?   12.0   5.5   9.9e-05      0.18      31     119 ..     689     781 ..     676     789 .. 0.79
   4 ?    6.2   0.2    0.0056        10      32     103 ..     897     968 ..     878     983 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.078
                      THHHHHHHHHHHHHHHHHHHHHHT.....-BTCCG-S--HHHHHHHHHHHHHHHHHS--EESE CS
  Cob_adeno_trans  50 eeelkeaLeeiqneLfdlgaelatp....ekkkekkkiteeeveelekeideleaelpplksf 108
                      ++ l e++++i  +L+d+ +el +     ++ +++ +i++++ +el +e  +lea+++ lk+f
       CCD22998.1 221 DKLLVETVRSIDPNLLDILEELKVLqneeQTVEDELEIKQKRYTELCNERTKLEASVQSLKEF 283
                      455677778888888888888865555443344455666666777777777777777777776 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.11
                      HHHHHHHHHHHHHHHHHHHHT.....-BTCCG-S--HHHHHHHHHHHHHHHHHS--EESEEES-SSHH CS
  Cob_adeno_trans  53 lkeaLeeiqneLfdlgaelatp....ekkkekkkiteeeveelekeideleaelpplksfilpggspa 116
                      ++e L+ei ++  +  ++l ++    +k++e+ +   e++ + +++i  ++++ ++l++ il ++s++
       CCD22998.1 340 IEENLNEIAEDKRTNETALESSkdalSKTVENLNAIRESIVKKQSQISYYQSRTKKLQQQILSTKSEL 407
                      34444444444333333333225555333333333334477778888888888888888888877665 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 9.9e-05
                      HHHHHHHHHHHHHHHCTTT...THHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHHHS--.EESEEES-SSHHHHH CS
  Cob_adeno_trans  31 tvDelnsaiglarallaee...eeelkeaLeeiqneLfdlgaelatpekkkekkkiteeeveelekeideleaelpp.lksfilpggspaaaa 119
                      ++De++ +i   ++  ++    ++el+++L++iqne  ++ ++    ++++e+ ++t+ ++++le+++del+ +  + ++++i   +++ a +
       CCD22998.1 689 EIDEFKTLIKERQSKFETLsneRSELEHQLRQIQNETAKVTQKGQELNQQRERYTMTQTTIQTLETKLDELKRDARKdVSQHIHVVEKKIAQE 781
                      5777777777777665444777889***********999988876558899999999999***********9555432777877776666655 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0056
                      HHHHHHHHHHHHHHCTTT..THHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHHHS- CS
  Cob_adeno_trans  32 vDelnsaiglarallaee..eeelkeaLeeiqneLfdlgaelatpekkkekkkiteeeveelekeideleaelp 103
                      ++ l+s i ++ + +++    ++++++++e+++ L ++ + lat+++k ++++++ e    l++ i ++++++ 
       CCD22998.1 897 IERLESEISMINHDASSItiLKKVETEINELEQTLPTMTSGLATTKEKIKQNRLELE--PGLDSMISKISKQFA 968
                      577888898888555444888899999999999999999999988666666666533..246666666665554 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.8e-05      0.18       6      45 ..      55      91 ..      51      97 .. 0.78
   2 ?   -2.5   1.0       1.8   3.2e+03     158     192 ..     365     398 ..     341     413 .. 0.55
   3 ?   -0.2   1.9      0.35   6.3e+02     147     202 ..     696     754 ..     675     767 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.8e-05
      AAA_27  6 LdLeryGkftdrsldfsaeeadlhliyGpNEAGKstalrA 45
                ++Le +  ++ +++++s   ++l +i+GpN +GKst + A
  CCD22998.1 55 IKLENFVTYKLTEFNLS---PSLNMIIGPNGSGKSTFVCA 91
                66777766666666666...9***************8766 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.8
      AAA_27 158 lrevleaLeaeadelfkprkskkrainealeelee 192
                 l++++e+L+a ++++ k++++ +  ++  +++l++
  CCD22998.1 365 LSKTVENLNAIRESIVKKQSQIS-YYQSRTKKLQQ 398
                 55555555555555555555544.22222222222 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.35
      AAA_27 147 lLfeasaGlaslrevleaLeaeadelfkprkskk...rainealeeleeakkelreaqv 202
                 l+ e ++ +++l++ + +Le++ +++ +++++ +   +++n+++e+++ +++++++ ++
  CCD22998.1 696 LIKERQSKFETLSNERSELEHQLRQIQNETAKVTqkgQELNQQRERYTMTQTTIQTLET 754
                 55555566667777777777777777777665543345677777777777776666555 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.2   2.2e+03     242     294 ..     351     408 ..     321     421 .. 0.55
   2 ?    6.9   1.9    0.0011         2     186     280 ..     700     787 ..     667     812 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.2
        FUSC 242 larlraeeaaavpelaallaelaal.....eaaaaaealeaalaalrarlralrrale 294
                  ++  ++ + + ++l+++++ l a+     +++ + + ++ + + l++++ +++++le
  CCD22998.1 351 KRTNETALESSKDALSKTVENLNAIresivKKQSQISYYQSRTKKLQQQILSTKSELE 408
                 3333333333333344444444444555554555566666666666666666655555 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0011
        FUSC 186 reaararlaadilalealrsqaayesprirararalrrllsrmlallallsslarllarlraeeaaavpelaallaelaaleaaaaaealeaala 280
                 r++++++l  +  +le ++ q   e++++ +  + l++ + r ++  ++++ l++ l +l++  ++    +++ +  +++    + a++le++ +
  CCD22998.1 700 RQSKFETLSNERSELEHQLRQIQNETAKVTQKGQELNQQRERYTMTQTTIQTLETKLDELKRDARKD---VSQHIHVVEK----KIAQELEQQTK 787
                 3578889999999999999999999999999999999999999999999999999999999888877...4444444444....23333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2723  (0.151877); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        63  (0.00351386); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.74u 0.40s 00:00:02.14 Elapsed: 00:00:00.62
# Mc/sec: 5462.68
//
Query:       CCD22999.1  [L=529]
Description: hypothetical protein NDAI_0A08460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.5e-108  360.9   0.0   7.1e-108  360.2   0.0    1.2  1  tRNA-synt_1c    tRNA synthetases class I (E and Q), catalytic
  ------ inclusion threshold ------
      0.036   12.9   0.4       0.06   12.2   0.0    1.5  2  UxuA            D-mannonate dehydratase (UxuA)
      0.087   12.9   0.3        1.4    9.0   0.0    2.5  2  Put_DNA-bind_N  Putative DNA-binding protein N-terminus


Domain annotation for each model (and alignments):
>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.2   0.0  1.2e-111  7.1e-108       4     313 ..      44     359 ..      42     360 .. 0.98

  Alignments for each domain:
  == domain 1  score: 360.2 bits;  conditional E-value: 1.2e-111
                   EEE---SSSS-BHHHHHHHHHHHHHHHHTT-EEEEEE--SSCCC--HHHHHHHHHHHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE-ST CS
  tRNA-synt_1c   4 tRfaPePtGyLHiGhakaallnylfAknnnGkfilRieDTdperekeeaeesiledlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvcect 100
                   tRfaP+PtG LH+G+ ++al+nyl+A+++nGkfilR+eDTd++r ++ea+ +i+e lkw+gi++de++++qsdr+ +++ky++ L+ +G AY c+ct
    CCD22999.1  44 TRFAPSPTGLLHLGSLRTALYNYLLARSTNGKFILRLEDTDQSRIHPEAISNIYETLKWCGINYDEGFIKQSDRLPIYHKYIKILLDSGAAYHCFCT 140
                   9************************************************************************************************ PP

                   HHHHHHHHCCSSHSS-TTTTS-HHHHHHHHHHHHHTTHSTTTS-EEEESSBTTSSGGGSSTEEEEEEESGGG......SBTTTBTSTSEEE-HHHHH CS
  tRNA-synt_1c 101 keeleeereeqeklgskerdrydeenlklfeeemkkgkaegekavvRlkideessvefrDlvrgriklepqe......ihdlvivksdiyPtYdfav 191
                   k++le++r++  + +++++++yd+++ +l +e ++++  ++ ++++Rlk++ +++  f+Dl++g++ ++ ++      ++d ++ ksd+yPtY+fa+
    CCD22999.1 141 KDRLEQLRRK--NSNTPNSPSYDRNCYHLDTEIVESNLTANLPYTIRLKSPDRYP-PFTDLLHGQVDIQLNQkergvwFDDPILIKSDGYPTYHFAN 234
                   ********99..78889*************************************9.9*********9998878899989****************** PP

                   HHHHHHTT-SEEEEEGGGGCCHHHHHHHHHHTT-S.-EEEEEE--EEETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-H.....HHHH CS
  tRNA-synt_1c 192 vidDaleeithvlrteefldntpkyiwllealglevppfiheylrlnlekkklSKRklsllvdekqvkewddlreallnflrrlGwtp.....eker 283
                   v+dD+l++ithv+r+ee+l +tpk+++l++ +g+++p+fih++l++ +++kklSKRk++ +  +  +ke+++l+eal+nf+++lGw+p     ++++
    CCD22999.1 235 VVDDHLMGITHVIRGEEWLPSTPKHVALYQLFGWDMPKFIHIPLLTSIDDKKLSKRKGDFS--VLSLKEKGVLPEALVNFCALLGWSPprdiaKANH 329
                   *************************************************************..899**********************99999999* PP

                   HHHHHHCCCSSS.EEEEHHHHHHHHHHHHH CS
  tRNA-synt_1c 284 elftreeliksfdlnresksleafdrkkLe 313
                   e+ft++e++k f+ln+++k + ++d kkL+
    CCD22999.1 330 ECFTMNEIEKLFNLNHLTKGNVKVDYKKLW 359
                   ****************************98 PP

>> UxuA  D-mannonate dehydratase (UxuA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2      0.82   4.9e+03     158     190 ..     336     368 ..     326     371 .. 0.72
   2 ?   12.2   0.0     1e-05      0.06     234     272 ..     446     487 ..     430     493 .. 0.77

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.82
                 S---HHHHHHHHGCCTT--HHHHHHHHHHHHHH CS
        UxuA 158 eeerldelrelleaykkideeklrenlayFlke 190
                 e e+l +l++l +   k+d +kl+   ++Fl+e
  CCD22999.1 336 EIEKLFNLNHLTKGNVKVDYKKLWFFNKHFLRE 368
                 445566666677777789999999999999987 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 1e-05
                 -STTEEEEEEHHHHTTSTT--HHHHHH...HHGGGEEEEE-- CS
        UxuA 234 dspangitlCtGslgaradndlvemik...efadriyFahlR 272
                 +  +n +tlC+G+lga++ +dlv+ ik   + +++i F  lR
  CCD22999.1 446 NEIKNVLTLCQGNLGATSLQDLVKAIKlevNIKKKIVFETLR 487
                 45689*******************998333345588887776 PP

>> Put_DNA-bind_N  Putative DNA-binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00023       1.4       8      26 ..     116     134 ..     113     135 .. 0.89
   2 ?    0.8   0.1     0.085   5.1e+02      21      36 ..     389     404 ..     382     406 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00023
                     HHHHHHHHHHHHHHHTT-- CS
  Put_DNA-bind_N   8 kRLplYlryLeelkeegve 26 
                      RLp+Y++y++ l ++g  
      CCD22999.1 116 DRLPIYHKYIKILLDSGAA 134
                     5*************99965 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.085
                     HHTT--EE-HHHHHHH CS
  Put_DNA-bind_N  21 keegveriSSteLaea 36 
                     +e g +++SS+ +++ 
      CCD22999.1 389 EEFGSDNVSSDVISQI 404
                     45799*******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3662.88
//
Query:       CCD23000.1  [L=363]
Description: hypothetical protein NDAI_0A08470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-26   91.9   2.7    3.8e-26   91.1   2.7    1.4  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    2.2e-19   69.7   0.1    4.2e-19   68.8   0.1    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
    2.6e-05   23.7   0.5    5.5e-05   22.6   0.5    1.4  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
     0.0014   18.0   0.1     0.0023   17.3   0.1    1.3  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain
  ------ inclusion threshold ------
        9.5    6.2  10.0        8.6    6.3   0.1    3.6  3  Rep_1B        Replicase polyprotein 1ab


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   2.7   1.1e-29   3.8e-26       1     109 []      36     152 ..      36     152 .. 0.89

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 1.1e-29
                 TTEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS.--TT-EEEE-SEEE.-SSSHHHHTT-GGG-.......TTBEETTTS CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk.lkvGdrVvveplis.cgeCaaCkegeenlC.......eeakllgvs 90 
                 p+++ ik++++g+CgsD+h + g ++   + pl++GHE++G+v+ +g+++++ lk GdrV v +++  c +C++Ck+++e +C        +    g+s
  CCD23000.1  36 PNDIDIKIECCGVCGSDIHAAAG-HWGDLEKPLVVGHEVIGTVVRLGENCNSgLKLGDRVGVGAQVFsCLDCERCKSNNEPYCpsfvttyGQSYKDGYS 133
                 57999******************.8************************9988*******99776655***************7777655444455666 PP

                 S-SSSBSEEEECGGGEEEE CS
       ADH_N  91 ldGgfaeyvvvpekklvkl 109
                  +Gg+a+y+ v+e+++v++
  CCD23000.1 134 SKGGYADYIRVHEHFAVPI 152
                 **************99875 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.1   1.2e-22   4.2e-19       1     129 [.     193     318 ..     193     319 .. 0.92

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 1.2e-22
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSC..SHHHHHHHHHCEEEEEEEEECSCTSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvG..sgatleaalkllkpgGrlvvvGggkgeee 96 
                 g+G++++ +Aka+Gaev+a+++++ k e a+klGad++i +ke+ d+  +  + +     d+++ c++  +   ++   k++k gG +v + +++++e+
  CCD23000.1 193 GIGHMGLIFAKAMGAEVYAISRTSAKKEDAMKLGADHFIATKEEpDWGTKYFDTF-----DLIVVCANslTDVDFNVVPKAMKVGGNIVSICVPEQNEV 286
                 8****************************************99888888887766.....66666666446999************************* PP

                 EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 fdlrnlllkeksilGsllgslreefkealdlla 129
                 ++l+++ l  +si  s lg+  +e+ke+ldl++
  CCD23000.1 287 LNLKPFGLLGVSISNSALGG-VKEIKELLDLVS 318
                 ********************.8********987 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.5   1.5e-08   5.5e-05      36      80 ..     183     227 ..     181     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.5e-08
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv 80 
                   gk+vGi+G+G IG+     +ka+g++v+a++r+  k+e++ +lg+
    CCD23000.1 183 GKKVGIVGIGGIGHMGLIFAKAMGAEVYAISRTSAKKEDAMKLGA 227
                   89*******************************988776655554 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   6.4e-07    0.0023      30      99 ..     185     254 ..     176     280 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.4e-07
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE-- CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtv 99 
                  kv ++G G  G   +  ak++ga+V+++   +a++e   +lga  + + k++ +  ++   + d+++ ++
   CCD23000.1 185 KVGIVGIGGIGHMGLIFAKAMGAEVYAISRTSAKKEDAMKLGADHFIATKEEPDWGTKYFDTFDLIVVCA 254
                  799***************************************9988888899999999999999887665 PP

>> Rep_1B  Replicase polyprotein 1ab
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.7     0.046   1.6e+02      23      49 ..      69      95 ..      66      99 .. 0.80
   2 ?    1.6   0.4     0.074   2.7e+02      41      48 ..     179     186 ..     166     189 .. 0.79
   3 ?    6.3   0.1    0.0024       8.6      24      44 ..     261     281 ..     257     288 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.046
                SSSSEEEEE--TSSEEEBSS-SCEEEE CS
      Rep_1B 23 vGhkvvavvadvGGnivfGcGPGshia 49
                vGh v+  v  +G n   G   G  + 
  CCD23000.1 69 VGHEVIGTVVRLGENCNSGLKLGDRVG 95
                9************99887776666655 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.074
                 SS-SCEEE CS
      Rep_1B  41 GcGPGshi 48 
                 GcGPG  +
  CCD23000.1 179 GCGPGKKV 186
                 9****877 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0024
                 SSSEEEEE--TSSEEEBSS-S CS
      Rep_1B  24 GhkvvavvadvGGnivfGcGP 44 
                    vv     vGGniv  c P
  CCD23000.1 261 DFNVVPKAMKVGGNIVSICVP 281
                 5678888889*******9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2720.21
//
Query:       CCD23001.1  [L=260]
Description: hypothetical protein NDAI_0A08480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-61  206.0   0.2    5.4e-61  205.6   0.2    1.1  1  DUF775    Protein of unknown function (DUF775)


Domain annotation for each model (and alignments):
>> DUF775  Protein of unknown function (DUF775)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.6   0.2     3e-65   5.4e-61       1     199 []       1     254 [.       1     254 [. 0.96

  Alignments for each domain:
  == domain 1  score: 205.6 bits;  conditional E-value: 3e-65
      DUF775   1 mFgvivagrpvqtelqqvse....tkfvfslpkaksishivvFllpnvtlpegtaaavYlqlpekeefklLGalsneKpSAifkvknekss........ 87 
                 mF++i++g+p+q + ++ ++    +++v+s +k+ks+shi +F+lpnvt+pe++ a+vY++l++ e+fk++G+ls+eKpSAifkvk ++++        
  CCD23001.1   1 MFAAIASGNPLQFSEEVANSnglqHTIVLSSTKPKSYSHISLFVLPNVTFPEDYIATVYFKLSPLEDFKMFGYLSAEKPSAIFKVKLQSTNnnnnlnnt 99 
                 9************988888889999**************************************************************99999******* PP

      DUF775  88 ........................seaesaseassaeesstltiGisiEpleqvaaqlaelkaeqsassssaassskseessaav.............. 148
                                         +++  ++++++ ++ s+l+iGisiEp+ + +a+l+++k+e ++ s++  ++  +++ss+ +              
  CCD23001.1 100 dtrtsrdgiqygeglgeidmdedeDQSFPHKNSMNFHNISQLIIGISIEPRMEGMAKLEAWKHEMAMGSTQIPQMPPTSSSSSLAlmkptrnittagql 198
                 *********************98755667788889************************************9999999888887799************ PP

      DUF775 149 .......tkelaqkiiknafnylaSFadkageevvplkafekWwekFerklendpnFl 199
                        t+ela ki+++a+nyl++F+d  ++++v++k+f++Ww+kF+++l+nd +Fl
  CCD23001.1 199 arlypalTQELAGKIVQHAYNYLSGFLD--SMGNVSIKRFDTWWDKFKKRLANDGTFL 254
                 ****************************..***************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1950.92
//
Query:       CCD23002.1  [L=474]
Description: hypothetical protein NDAI_0A08490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-108  361.5  16.2   5.1e-108  360.7  16.2    1.4  1  SIL1      Nucleotide exchange factor SIL1


Domain annotation for each model (and alignments):
>> SIL1  Nucleotide exchange factor SIL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.7  16.2  2.8e-112  5.1e-108       2     290 .]     174     474 .]     173     474 .] 0.98

  Alignments for each domain:
  == domain 1  score: 360.7 bits;  conditional E-value: 2.8e-112
        SIL1   2 eyeFssafkeirsll...klsssdverlekaLddlielshDykfGvkiishefellknlslndklpvelrelsariigssLRNNpeavenvlekkpefv 97 
                 eyeFs++fk+ir+ll   ++ s+d+++le+ +d+++e++hDyk+G+kiishef+ll+n+s+nd+lp ++rels+r+i+s+LRNNp++ e++++++p+f+
  CCD23002.1 174 EYEFSNDFKTIRDLLynpTILSKDLDNLETIFDNVMEFAHDYKHGYKIISHEFRLLQNISFNDQLPPTIRELSTRVITSCLRNNPPVKEYINNNYPAFI 272
                 89*************999999****************************************************************************** PP

        SIL1  98 kelfeelselsk......kksdvliKRylsilqeLlqnsefvtkyekkskletLieiyeikdkqikikvlelledllleeee.......ksevkkrsae 183
                 +++f +++ l +      k +++l KRylsil+eL+++++++tk     k+  L++iy i+d+qikik+lel++ ++++e +        + +k+++++
  CCD23002.1 273 DNTFVAMDILVNnlsydlKIKKFLLKRYLSILNELIETPYQFTKD----KMIILQHIYAIQDQQIKIKILELISICFTDEIDsneneelPNLNKRDNIQ 367
                 *******999999********************************....****************************99987888888877779999** PP

        SIL1 184 eeeedvqewaselskfiqdkeidelhvrkfFnsLveikkefkkdlkvsseFlnWLakeveaRkkelkkrlkerdleqdeFdkkliesRhlvFGNpmAlr 282
                 ++ +d+q+w++e+++++qdk +de+h+rkfFnsL++ik++fkkd+k++s+FlnWLa++ ++R+k+l+++l+erdleqd+Fd+kli+sRh++FGNp+A r
  CCD23002.1 368 QNVPDLQSWTNEFTSLVQDKDLDEWHLRKFFNSLYNIKTTFKKDIKIDSKFLNWLAEQEKQRTKRLNNGLQERDLEQDSFDEKLISSRHSIFGNPLADR 466
                 *************************************************************************************************** PP

        SIL1 283 ikafaDEL 290
                 ik+f+DEL
  CCD23002.1 467 IKHFDDEL 474
                 *******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1591  (0.0887389); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3349.90
//
Query:       CCD23003.1  [L=106]
Description: hypothetical protein NDAI_0A08500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-25   89.6   8.8    1.8e-25   89.4   8.8    1.1  1  Ribosomal_60s  60s Acidic ribosomal protein


Domain annotation for each model (and alignments):
>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   8.8   9.8e-30   1.8e-25       2      88 .]      17     105 ..      16     105 .. 0.95

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 9.8e-30
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS--STTT CS
  Ribosomal_60s   2 ptaenikkvlkaagveveaarvkllvkalegkdieellangaakla...aaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedddmGfgLF 88 
                    p+a+n+k+vl+++g+++e+ +v+ l+++legk+++el+ +g++kla   aa++a+ +a aa+a+ +a ee+k+eeee Ee+d dmGfgLF
     CCD23003.1  17 PNADNVKAVLSSVGIDIEEDKVSSLISSLEGKSVDELIVAGNEKLAavpAAGPASGSAPAAGASGDATEEAKEEEEE-EESDADMGFGLF 105
                    99*******************************************99998889999999999999999999999998.8*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 854.75
//
Query:       CCD23004.1  [L=474]
Description: hypothetical protein NDAI_0A08510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-18   65.4   3.1      5e-14   51.9   0.1    4.4  4  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
    1.1e-05   25.4   1.8      0.095   12.8   0.0    3.4  2  RRM_7        RNA recognition motif
    0.00034   20.2   0.1     0.0025   17.4   0.0    2.5  2  Spo7_2_N     Sporulation protein family 7
  ------ inclusion threshold ------
      0.032   14.2   0.1        0.1   12.6   0.1    1.8  1  Nup35_RRM    Nup53/35/40-type RNA recognition motif
      0.085   12.9   0.0       0.22   11.5   0.0    1.7  1  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.11   3.9e+02      10      33 ..      16      40 ..      10      46 .. 0.82
   2 ?    3.8   0.1     0.014        51       1      21 [.     167     188 ..     167     192 .. 0.84
   3 !    5.8   0.0    0.0034        12      41      69 ..     256     284 ..     236     285 .. 0.88
   4 !   51.9   0.1   1.4e-17     5e-14       1      67 [.     301     367 ..     301     370 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.11
                SSHHHHHHHHHT.TSCEEEEEEEEE CS
       RRM_1 10 vteeeLkelFsk.fGpiksiklvrd 33
                  e+++++lF+   Gpi ++++ ++
  CCD23004.1 16 KLESNISKLFNAsSGPIDNLQVKNK 40
                568999*****99*********997 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.014
                 EEEESETTTS.SHHHHHHHHHT CS
       RRM_1   1 lfVgnLppdv.teeeLkelFsk 21 
                 +f+gn+p+dv t +++++ F+k
  CCD23004.1 167 VFIGNIPNDViTSKTVYKTFKK 188
                 8*****9995499999999998 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0034
                 EEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  41 fafVeFeskedAekAlealngkklggrel 69 
                  a++ +++k   + + ++lng+ ++++ l
  CCD23004.1 256 NAYIVYKNKNIVKTICSELNGTVFHNHHL 284
                 59***********************9987 PP

  == domain 4  score: 51.9 bits;  conditional E-value: 1.4e-17
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggr 67 
                 +fVgnL ++  ee L  +F+ +G+i+ ++++rd +t+  kgfa+V+F+   + +kAl  ln k ++++
  CCD23004.1 301 IFVGNLDFEEAEESLWNHFKSCGEIEYVRIIRDaKTNMGKGFAYVQFKELQSVNKALL-LNDKVMMKS 367
                 8********************************************************9.999988766 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.6    0.0005       1.8       2      28 ..     165     192 ..     164     295 .. 0.82
   2 !   12.8   0.0   2.6e-05     0.095       2      67 ..     299     357 ..     298     379 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0005
       RRM_7   2 rkvFvGGlPiD.iteeelkatfkefgkv 28 
                 r vF+G +P D it + +++tfk+  ++
  CCD23004.1 165 RTVFIGNIPNDvITSKTVYKTFKKLFNT 192
                 67*********55888999999876544 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 2.6e-05
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLl 67 
                 r +FvG l  +  ee+l++ fk+ g+  +++ +  + +k++       kg++++ f++ +sv++ l
  CCD23004.1 299 RSIFVGNLDFEEAEESLWNHFKSCGE--IEYVRIIRDAKTNM-----GKGFAYVQFKELQSVNKAL 357
                 679*********************97..79999988877754.....58*************7633 PP

>> Spo7_2_N  Sporulation protein family 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.9e-07    0.0025      19      58 ..     157     194 ..     155     200 .. 0.83
   2 ?   -2.3   0.0      0.99   3.5e+03      15      31 ..     343     359 ..     342     359 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.9e-07
    Spo7_2_N  19 peelsltsrvvlLGgIPelWlqeqrksiyksllklskyks 58 
                  eel++ +r+v++G IP++ +   +k +yk+++kl +++ 
  CCD23004.1 157 EEELAKAERTVFIGNIPNDVI--TSKTVYKTFKKLFNTNP 194
                 589****************95..57889999999866654 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.99
    Spo7_2_N  15 syaspeelsltsrvvlL 31 
                  y+  +el   ++ +lL
  CCD23004.1 343 AYVQFKELQSVNKALLL 359
                 69999*******99997 PP

>> Nup35_RRM  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.8e-05       0.1      18      82 ..     310     367 ..     293     371 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
                 GGHHHHHHHHHTTS-BSS--CCC------------EETTEEEEEBS-HHHHHHHHTTTTEEETTE CS
   Nup35_RRM  18 sianevlehFskfGeiledvqvlklgkglnpkpiptgenwvkltYksessaskAlqengtilngs 82 
                 ++  ++ +hF+ +Gei e v++++++      ++  g+++ ++++k+  s +kAl  n++++ +s
  CCD23004.1 310 EAEESLWNHFKSCGEI-EYVRIIRDA------KTNMGKGFAYVQFKELQSVNKALLLNDKVMMKS 367
                 4567899********8.777888876......68899*******************999988655 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.2e-05      0.22      19      53 .]     317     357 ..     306     357 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.2e-05
  Nup35_RRM_2  19 ehFasfGeIvkhyvp......kevsvmyvkfesekdaekAL 53 
                   hF+s+GeI    +        ++ ++yv+f+   + +kAL
   CCD23004.1 317 NHFKSCGEIEYVRIIrdaktnMGKGFAYVQFKELQSVNKAL 357
                  4********7533336788887799**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1894  (0.105639); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 3390.95
//
Query:       CCD23005.1  [L=200]
Description: hypothetical protein NDAI_0A08520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21   10.4   5.9       0.31    9.8   5.9    1.2  1  Mitofilin  Mitochondrial inner membrane protein


Domain annotation for each model (and alignments):
>> Mitofilin  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.9   1.7e-05      0.31     365     411 ..     144     190 ..     131     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 1.7e-05
   Mitofilin 365 eeyeekLrteLerqaeaheehLkdvlveqeieLkrefqqeikekvee 411
                 e+y++++r +++ q+  h++hL+++   q  + +r  +q +  ++ +
  CCD23005.1 144 EKYQKQMRLQQQHQQHQHQQHLQKNFPNQHFQDRRMINQPLPHQIHQ 190
                 89***********************9999998888888877777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2204  (0.122929); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1497.28
//
Query:       CCD23006.1  [L=365]
Description: hypothetical protein NDAI_0A08530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-10   40.7   0.0    3.6e-10   39.7   0.0    1.5  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
       0.11   12.4   0.2       0.83    9.5   0.0    2.4  2  Exo_endo_phos_2  Endonuclease-reverse transcriptase


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0     4e-14   3.6e-10       2     233 .]      34     354 ..      33     354 .. 0.79

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 4e-14
                    EEEESTG............CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH................TTCEEEEECCHECSSS CS
                    xxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxx RF
  Exo_endo_phos   2 twNvngq............aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal................ggflgasstsptgggg 69 
                    ++N+++               ++  ++r++   ++ll +y+aD++++QE+  +++ + ++l ++                ++           +  
     CCD23006.1  34 SYNMLSPsymwpqvytyvpDQYKDWNYRHTLLELELLDKYKADIMCVQEMTKRDYIDYWQLKLGttigygskfiaksppkYW----------ERHL 119
                    6777777777777777776556666666677778999999**************9999888877888877777766665433..........3445 PP

                    TTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE.................................................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................. RF
  Exo_endo_phos  70 gggnggavlsrfpltslfrrtfiefndlvaalrreplaakleqlni.................................................. 115
                       +g+a++++ + + ++  + i+ n   +  + e l +  e+                                                     
     CCD23006.1 120 LDLDGVAIFYNLQKFDFISSSGIYLNEFLDVFNPEELQYLKEKTLEltdgagikidektlfeilsvknqvslfvclkhketgqvfiiinthlywky 215
                    778***********7776666666665555555555555555555455599999999999999999999999999999999999999999999888 PP

                    .CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH..H..........SSCESCETTTTTTTTTTTEB- CS
                    .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x..........xxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 116 .ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap..v..........glyllgggptptyvtraggsr 198
                     +   +    ++++l    ++++++ ++++ ++i+aGD+N++ ++ ++ +l+ + l++      +              +    t+t+ +    + 
     CCD23006.1 216 dEVKLSQCIIIMRELSKIIDELLQDVRHSKVKIIFAGDLNSTKDSLVVKFLEGQILSHGALNmvNpmrpyfnssiYNKVPEDFFTNTCYSGKLKGI 311
                    88888888888888888889999999999999999***************9988888877766515555667789999999999999999999999 PP

                    BEEEEEEC.HHHCCEEEEEEECCHHEEC.......TSSCSSSB CS
                    xxxxxxxx.xxxxxxxxxxxxxxxxxxx.......xxxxxxxx RF
  Exo_endo_phos 199 lDrilasp.alalfrsgvlppplalvrr.......ealtlSDH 233
                     D+ ++++ +l l   +++ +  +   +       +++ +SDH
     CCD23006.1 312 FDYLWYNDkDLSLTKILRGKEVSDELEAlmefglpNKDHPSDH 354
                    9*******99999999999888877777999999999999999 PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   9.3e-05      0.83       7      43 ..     212     258 ..     206     261 .. 0.78
   2 ?   -0.6   0.0      0.13   1.1e+03     107     118 ..     346     357 ..     332     358 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 9.3e-05
  Exo_endo_phos_2   7 Yippsd........elenlestlekllselksp..kiiilGDfNakh 43 
                      Y++ ++         +++l++ +++ll++++++  kii++GD+N ++
       CCD23006.1 212 YWKYDEvklsqciiIMRELSKIIDELLQDVRHSkvKIIFAGDLNSTK 258
                      55555566666666678899999999999999999*********875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.13
  Exo_endo_phos_2 107 eeedlgSDHrpi 118
                       ++d+ SDH pi
       CCD23006.1 346 PNKDHPSDHIPI 357
                      578999***998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2854.82
//
Query:       CCD23007.1  [L=400]
Description: hypothetical protein NDAI_0A08540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00093   19.9   0.6    0.00093   19.9   0.6    1.8  2  HNF-1_N          Hepatocyte nuclear factor 1 (HNF-1), N termi
  ------ inclusion threshold ------
       0.53   10.1   2.9          2    8.2   0.2    2.8  3  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym


Domain annotation for each model (and alignments):
>> HNF-1_N  Hepatocyte nuclear factor 1 (HNF-1), N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.52   4.6e+03      84     119 ..      22      55 ..       4      75 .. 0.44
   2 !   19.9   0.6     1e-07   0.00093       4      93 ..     240     324 ..     237     346 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.52
     HNF-1_N  84 edessspgnsydtspilsasqrsfsfekaeeledld 119
                 + +++s +  ++ + +l  ++  ++++++++ +dl+
  CCD23007.1  22 NSDEPSGSTGISLQNLL-DDTMFDEYNTNDD-DDLK 55 
                 22222222223333333.3333333443333.4443 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 1e-07
     HNF-1_N   4 elLqrllesGltkeelihALedldrldrehgekleklrlaegeeadskggittlangagkssknasssttksklsqtqrledessspgns 93 
                 +lL+ +  sG+++e++i  L + +++d+e + k  k+++ + ++++ +g+ t+l+ + +k s +++ ++ +s+ s+   ++d+++ ++++
  CCD23007.1 240 NLLNESFVSGISREKIILDLLEKKHVDNELKRK--KIKNNNRSHQKRHGNYTSLPPSPSKMSPKENLTIAESTSSK---NTDQEPTDKET 324
                 69999**********************999666..66777666667788999999888887777665555444333...33333333333 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2   0.00023         2      28      55 ..      62      89 ..      61      95 .. 0.92
   2 ?   -2.5   0.0       0.5   4.5e+03      42      55 ..     201     214 ..     198     220 .. 0.75
   3 ?    0.7   0.1      0.05   4.4e+02      46      60 ..     365     379 ..     360     385 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00023
  PolyA_pol_RNAbd 28 feEllKlLlsghpeaglelLretgLlky 55
                     + E+l l+l g+ + +le++ e+ Ll++
       CCD23007.1 62 YQECLNLFLKGKIKSCLEKMLELDLLQV 89
                     689***********************86 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.5
  PolyA_pol_RNAbd  42 aglelLretgLlky 55 
                      +g+++L++t L+++
       CCD23007.1 201 EGIQELVHTLLFDI 214
                      67888888888875 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.05
  PolyA_pol_RNAbd  46 lLretgLlkylfPel 60 
                       L++ +L+ky+f  +
       CCD23007.1 365 ILKKIKLFKYIFKNI 379
                      689999******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1236  (0.0689386); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3130.21
//
Query:       CCD23008.1  [L=664]
Description: hypothetical protein NDAI_0A08550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-72  244.7   2.2    1.5e-72  244.3   2.2    1.2  1  Mannosyl_trans3  Mannosyltransferase putative


Domain annotation for each model (and alignments):
>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   2.2   8.4e-77   1.5e-72       1     275 []     262     540 ..     262     540 .. 0.98

  Alignments for each domain:
  == domain 1  score: 244.3 bits;  conditional E-value: 8.4e-77
  Mannosyl_trans3   1 gkGIVisgggkesllalrlIkvLralgnkLPIeivikkeelekefcekilpaaeepkqevwfvnakcvlnedylgkefkgfqnKalAllfssFe 94 
                      gkGIV+++++ ++ +   l+ v +++gnkLPI++v ++++++ke+++++ ++a++ kq+v+ v+++++l++d+++k++k++ nK++ +lf++Fe
       CCD23008.1 262 GKGIVVTMKDLDKNMFEGLVTVFEEMGNKLPIQLVSTGKDFTKETMDHLQNFAKNAKQDVYYVDCSPMLDQDFVEKNIKSYVNKWIGVLFNTFE 355
                      89********7777777***************************************************************************** PP

  Mannosyl_trans3  95 evllLDaDnvplknpdklFeseeYkktglllwkdrdlwkrstspkfyeiaenklepskeeskyfgkkerek.........eseevplhdlfgti 179
                      e +++DaD+vp+  p+k++e+ eYkktg+++++dr+l + +t ++++++++  +epskee+k+ ++k +++         +se+++++ +f++ 
       CCD23008.1 356 ELVFFDADSVPFIAPEKFLENSEYKKTGAYFFRDRSLGNDRTFQYCIDMIQ-VMEPSKEEKKLIKSKTKFEtlnppetksSSEAAIFNSFFQNF 448
                      ***************************************************.**************99999********99************* PP

  Mannosyl_trans3 180 pdhssesGlvvinKkkhlktLllalylnlygpkykllsqgaagegdKEtfwlaahvlgekYyfvkekaaaiGeltkkekkk..seskeicsaql 271
                      + + ++sG+v++nKk+++ +Ll+ + l+l   k+k+++ g     dKE+fwl+ +++g++Y++ k++ +++G + +  + k  +++ +ics+q+
       CCD23008.1 449 QHNNVDSGVVMLNKKQKMGGLLMGFFLHLD-AKMKKCVSG-----DKEMFWLGNLLAGQDYSIAKSYGSIAGNVGSMGDGKegESTLYICSTQV 536
                      *****************************9.99*******.....*******************************98888999999******* PP

  Mannosyl_trans3 272 ghld 275
                      +h+d
       CCD23008.1 537 AHVD 540
                      **98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4498.20
//
Query:       CCD23009.1  [L=1317]
Description: hypothetical protein NDAI_0A08560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.1e-60  202.4   1.2    2.7e-59  200.7   0.1    2.3  2  Pkinase         Protein kinase domain
    1.7e-19   70.1   0.0    3.2e-19   69.2   0.0    1.5  1  Pkinase_Tyr     Protein tyrosine kinase
    3.4e-08   33.1   0.0    8.1e-08   31.9   0.0    1.6  1  Kinase-like     Kinase-like
     0.0014   18.0   0.1     0.0032   16.9   0.1    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.01   16.1   1.1       0.31   11.3   0.1    3.6  3  PAS_9           PAS domain
      0.016   15.2   0.0       0.24   11.4   0.0    2.4  2  PAS             PAS fold
      0.034   12.9   0.7      0.059   12.1   0.0    1.7  2  Pkinase_fungal  Fungal protein kinase
      0.038   13.6   0.1       0.13   11.8   0.1    1.9  1  RIO1            RIO1 family
        0.1   13.1   0.2       0.44   11.0   0.2    2.1  1  NOC3p           Nucleolar complex-associated protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.38   7.5e+02     221     254 ..     261     294 ..     215     301 .. 0.75
   2 !  200.7   0.1   1.3e-62   2.7e-59       2     264 .]    1058    1315 ..    1057    1315 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.38
                 TSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT CS
     Pkinase 221 getkeklpeaseiseeakdllkkllkkdpkkRlt 254
                  +++e ++++++  e+++++l++ l+ + ++R +
  CCD23009.1 261 SQSTELMNTQKSNIENLLQFLNETLENNTSERAS 294
                 355566666666789999*************987 PP

  == domain 2  score: 200.7 bits;  conditional E-value: 1.3e-62
                  EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH......HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEB...HH CS
     Pkinase    2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke......kkvlrEikilkklk...hpnivrlyevfeekdelylvleyvegge...la 86  
                    le++G+G++GkV  +++k +++iv++K+i ke++  ++        ++ +Ei+i+++l+   h+ni+ ++++fe+++++y+ +    ++    l 
  CCD23009.1 1058 AILEEMGQGAYGKVNLCIHKLSRQIVVIKMIVKERILVDTWvrdrklGTIPSEIQIMATLNktpHENILSILDFFEDDNYYYVEMPTHGETGtidLY 1154
                  56899******************************98877777788899********************************977765543336889* PP

                  HHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHH CS
     Pkinase   87 dllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWs 182 
                  dl+e k++++e e+k ++kq++++++ +H++gi+HrD+K+eNi++d+kg +K++D+G a+  +s+  ++ fvgt +Y APEvl++n y +k+ D+W+
  CCD23009.1 1155 DLIEFKKNMTELECKLMFKQVVSAIKCMHDQGIVHRDIKDENIIVDSKGCIKLIDYGSAAYTKSGP-FDVFVGTIDYAAPEVLSGNLYdGKPQDIWA 1250
                  **************************************************************9998.*********************9******** PP

                  HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase  183 lGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264 
                  lG++ly+++++++pf+          ++d+      i+ + +++++e  +i+++++ l+kk+l++   +R+t++ + ++++l
  CCD23009.1 1251 LGILLYTIVFKENPFY----------NIDE------IV-DGELTFNESMSIDSKCIILIKKMLNRVVGQRPTIDAIYNDEWL 1315
                  ****************..........4555......22.347899999*******************************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   1.6e-22   3.2e-19       3     251 ..    1059    1305 ..    1057    1312 .. 0.74

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 1.6e-22
                   EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE...STTSSHHHHHHHHHHHHHHHTS...-BTTB--EEEEEESSSSEEEEEE--.TTE..BHH CS
  Pkinase_Tyr    3 lgkklGeGafGkVvegtlkgekekkevkVavKtl...keeateeekeelleeakimkkl...khpnivkllgvctkeepllivteyv.kgG..dLl 89  
                   + +++G+Ga+GkV  +  k +++   +k +vK     +   ++++   + +e++im +l    h+ni+++l +  +++ +++ +    + G  dL 
   CCD23009.1 1059 ILEEMGQGAYGKVNLCIHKLSRQIVVIKMIVKERilvDTWVRDRKLGTIPSEIQIMATLnktPHENILSILDFFEDDNYYYVEMPTHgETGtiDLY 1154
                   6789**************966666666666664222245567777889999*****98754469***********888877755543145566677 PP

                   HHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHH CS
  Pkinase_Tyr   90 kfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsk 185 
                   + ++ k  +++t  +   +  qv ++++ ++++ +vHrd+   N++++++ ++k+ D+G a  +    +    +     + + apE+l+ + +  k
   CCD23009.1 1155 DLIEFK--KNMTELECKLMFKQVVSAIKCMHDQGIVHRDIKDENIIVDSKGCIKLIDYGSAAYT----KSGPFDVFVGTIDYAAPEVLSGNLYDGK 1244
                   777766..7888888888999**************************************99988....334445566799*************977 PP

                   .HHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS-- CS
  Pkinase_Tyr  186 .sDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRpt 251 
                     D+W+ G+ll+ i+   e+p+ ++++  v   l+ ++ ++  +kc       +kk +++   +Rpt
   CCD23009.1 1245 pQDIWALGILLYTIVF-KENPFYNIDEI-VDGELTFNESMSIDSKCIIL----IKKMLNRVVGQRPT 1305
                   47***********998.78888877543.33444444455555444444....44444444445555 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   4.1e-11   8.1e-08     141     287 ..    1164    1302 ..    1119    1303 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 4.1e-11
  Kinase-like  141 letiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.seve.kgfaPpEllgsrggytrknktkmthkldaW 234 
                    e  ++l+   q++  +  ++++g+vh +++ +n++ d kg ++l + ++   + ++++    v    +a pE+l+  + y          + d W
   CCD23009.1 1164 TELECKLMF-KQVVSAIKCMHDQGIVHRDIKDENIIVDSKGCIKLIDYGSAA-YTKSGPFdVFVGtIDYAAPEVLSG-NLYDG-------KPQDIW 1249
                   344466666.8999*********************************98754.445555422232467*******98.55555.......688*** PP

  Kinase-like  235 qlGlviyriwclklPltlateeakeewkfklckkipekvkaLlkkfLqlsqed 287 
                   +lG+  y i   + P+ ++ e +  e  f+    i  k  +L+kk+L++ + +
   CCD23009.1 1250 ALGILLYTIVFKENPFYNIDEIVDGELTFNESMSIDSKCIILIKKMLNRVVGQ 1302
                   ************************************************97655 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.6e-06    0.0032     101     166 ..    1149    1210 ..    1145    1217 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.6e-06
         Kdo  101 gaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166 
                  g++dL dl++  +++ e   + ++k+v  +i+ +h+ g+ H+d+   ni ++ ++     i liD 
  CCD23009.1 1149 GTIDLYDLIEFKKNMTELECKLMFKQVVSAIKCMHDQGIVHRDIKDENIIVDSKG----CIKLIDY 1210
                  78899999997666888888999******************************99....8888886 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.32   6.3e+02      15      57 ..     430     471 ..     414     487 .. 0.76
   2 ?   11.3   0.1   0.00016      0.31       3      41 ..     671     721 ..     669     799 .. 0.67
   3 ?   -1.4   0.0       1.4   2.8e+03      16      46 ..     806     835 ..     804     873 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.32
       PAS_9  15 yaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqg 57 
                 +aN+ a+  +G s++++    + dl+ +++++n  l+++l+  
  CCD23009.1 430 SANDLACLTFGLSRNALKVLTLLDLI-HPDSRNFVLQKLLNLE 471
                 79************************.6666666666666554 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00016
       PAS_9   3 gilidnpdg.rilyaNeaalrl.lGyspeevlgksitdlf..........v 41 
                 g +i++++  +++++N++  +  +Gy+  +++gksi  ++           
  CCD23009.1 671 GLFIVDSQTmNLISFNKSISKNmFGYHYVDLVGKSIASIIphfidfiqymN 721
                 6777555554888*****97644****************965554444431 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.4
       PAS_9  16 aNeaalrllGyspeevlgksitdlfvtdpea 46 
                  N++ l +l  ++ e++g s+ +    ++++
  CCD23009.1 806 TNPSQLSMLKENELELVGSSCPNSN-ASSKR 835
                 6999999*9999999***9998877.33333 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.24      26      73 ..     431     478 ..     429     508 .. 0.89
   2 ?    0.5   0.0       0.3     6e+02      13      51 ..     671     711 ..     660     719 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
                 ECHHHHHHHSSTHHHCTTSBGGGGBSTTHHHHHHHHHHHHHHHTT-EC CS
         PAS  26 vNaaaeellGlsreevlgkslldliheeddaelaelleqlleqgeesr 73 
                 +N+ a+  +Glsr+ +   +lldlih++++  + ++l++l+++++++ 
  CCD23009.1 431 ANDLACLTFGLSRNALKVLTLLDLIHPDSRNFVLQKLLNLENNNNDPV 478
                 79**************************99999999999999988775 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.3
                 EEEEEE.TTSBEEEECHHHHH.HHSSTHHHCTTSBGGGGBS CS
         PAS  13 pifvvD.edgrilyvNaaaee.llGlsreevlgkslldlih 51 
                 + f+vD    + + +N+++ + ++G+   +++gks+   i+
  CCD23009.1 671 GLFIVDsQTMNLISFNKSISKnMFGYHYVDLVGKSIASIIP 711
                 66666644445666777776549************986555 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.5       2.8   5.7e+03     247     248 ..     323     339 ..     261     379 .. 0.44
   2 ?   12.1   0.0     3e-05     0.059     311     387 ..    1171    1237 ..    1157    1247 .. 0.72

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 2.8
  Pkinase_fungal 247 e...............l 248
                     +                
      CCD23009.1 323 ShlkrtllsslaepfyE 339
                     02222232223323221 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3e-05
  Pkinase_fungal  311 alrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlk 387 
                       +++++ + + ++ ++gi+HrDi  +Ni++      ++ +  LiD   a  ++  s        +GT+ + a evl+
      CCD23009.1 1171 MFKQVVSAIKCMH-DQGIVHRDIKDENIIVD-----SKGCIKLIDYGSAAYTK--SGPF--DVFVGTIDYAAPEVLS 1237
                      5788999999999.**************998.....56677777766665555..2222..3456666666666665 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.6e-05      0.13     101     152 ..    1162    1213 ..    1148    1219 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.6e-05
                  CG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTE CS
        RIO1  101 veeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQa 152 
                    +e e + ++++v++  +k ++++g+vH D+ + N++vd++  + +ID + a
  CCD23009.1 1162 NMTELECKLMFKQVVS-AIKCMHDQGIVHRDIKDENIIVDSKgCIKLIDYGSA 1213
                  3336677888899998.577777*****************9967789998765 PP

>> NOC3p  Nucleolar complex-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00022      0.44       4      71 ..     257     324 ..     255     335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
       NOC3p   4 eeiaslassiledPeenlsllkrllklaeskdsavtvrklallsllaVfkDiiPgYrIrsltekekee 71 
                 +++ s ++++++  ++n+++l + l+ + +++++ + + l  +sll+V k ++P+ ++++ +e+e+++
  CCD23009.1 257 NQLESQSTELMNTQKSNIENLLQFLNETLENNTSERASDLHNISLLNVNKLLLPSNNVNDESEEEQSH 324
                 688999999*********999888884444444799**********************9999888743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1589  (0.0886274); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.46
# Mc/sec: 8565.23
//
Query:       CCD23010.1  [L=348]
Description: hypothetical protein NDAI_0A08570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-08   35.6   4.8    1.4e-08   35.2   4.8    1.2  1  EI24      Etoposide-induced protein 2.4 (EI24)
  ------ inclusion threshold ------
       0.11   13.1   1.8       0.23   12.1   1.8    1.5  1  LAMTOR    Late endosomal/lysosomal adaptor and MAPK and MTOR 


Domain annotation for each model (and alignments):
>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   4.8   1.6e-12   1.4e-08      14     176 ..     112     321 ..      96     322 .. 0.69

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.6e-12
                 TTHHHHHHHHHHHHHHHHHHHHHHH......-..TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHH.......................... CS
        EI24  14 kllallllplllnlllfllllvlll......w..vllasllvllllllplwlfplvalllaapf.ygllaekv.......................... 77 
                 k++a++ ++ +++++++++l++l l      w   +l ++ ++l+ l++++ + +++ ++++ + ++ + +++                          
  CCD23010.1 112 KYIAVFGVSYVITFFVIGGLYYLTLlpivlsWsmLFLGPIGFVLAHLQWVLQTNALTSIISSKLvLPFINDRIydmalvmnggedflnkgklirkvksk 210
                 334444788888888888666666688888877766666666666666666666666666655556666666666669999988888888888777777 PP

                 ...............HH.HHCCTTSHHHHHHHHHHHHHHHHHHHHH.HHTTHHH....HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTHHHHHHH CS
        EI24  78 ...............ekrhlglvkslaeslkslllllllllvllpl.liPvvglilsplllswltayfycfeyldlaagrsleerrallerrrayflgf 160
                                e +++ +v++   s+ ++++ +++++ l++l ++P++g++++  +++   ++ y+  y  + +g++ +e++++  ++ ++f+ f
  CCD23010.1 211 tkkdlkidsttskekE-SQW-IVRKT-WSILKFFRNTIITISLTLLsMVPLIGPPIVNQIMAPSRSFSYMTRY-FYLKGFNHKEAKDFQYENYGHFVCF 305
                 6555555555544321.123.33333.5555666666666666666777999999999999998888888888.566678******************* PP

                 HHHHHHHTTSCCHHCT CS
        EI24 161 GllvslllliPllnll 176
                 G++  +l + P+++++
  CCD23010.1 306 GMASGILEFLPFISII 321
                 *************987 PP

>> LAMTOR  Late endosomal/lysosomal adaptor and MAPK and MTOR activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.8   2.6e-05      0.23      18      58 ..      22      62 ..       8      65 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.6e-05
      LAMTOR 18 srgydnslqqqeqespekltdeqeaLnkIvqetsdnlIDIS 58
                 ++ d+s+q++ +    + + e++ L kIv  +s+++IDI+
  CCD23010.1 22 AEPKDYSVQKEGKDIDIQNSNEEQSLLKIVKLYSNQIIDIA 62
                5566777777777777778899999***************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2649.02
//
Query:       CCD23011.1  [L=514]
Description: hypothetical protein NDAI_0A08580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.7e-118  394.2   0.0   5.4e-118  394.0   0.0    1.0  1  GSH_synth_ATP  Eukaryotic glutathione synthase, ATP binding d
    7.3e-31  106.7   0.1    1.9e-30  105.4   0.1    1.7  1  GSH_synthase   Eukaryotic glutathione synthase


Domain annotation for each model (and alignments):
>> GSH_synth_ATP  Eukaryotic glutathione synthase, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.0   0.0    6e-122  5.4e-118       5     375 .]      31     513 ..      27     513 .. 0.93

  Alignments for each domain:
  == domain 1  score: 394.0 bits;  conditional E-value: 6e-122
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxx.xxxxx RF
  GSH_synth_ATP   5 eelveeakdwalahGllvrkaekkekkessesathapvtLlPspfprklfeeAvevqkayneLyakva.....sdeefLeevleevikvD.eFtak 94 
                    ++l+ e+ +w+l+hGl+v+k++     ++++ at++p+t +P+p+prk+fe A++vq  +n+Lyak++     ++++f+++v ++++k D  Ft+k
     CCD23011.1  31 DSLLPELYKWSLSHGLMVYKEN-----STPNEATMVPLTAYPTPIPRKAFEAAIDVQLPFNQLYAKIStvgtdQESSFISKVSSKLAKSDpTFTGK 121
                    6899999***********4322.....347899**********************************9554334589*************99**** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx....xxxxxxxxxxxxxxx RF
  GSH_synth_ATP  95 LweiyekvkkeglvqklslglfRsDYllheeeekeelslkqvEfNtisssfgglsskvselhryllk....kekkkk....sllksnelpeneale 182
                    Lw++ +k+ ++   q+++lg+fRsDYl+++++    +s+kqvEfNtis+sf+g+s+kv++lh++l++    +         ++   +e+p +++++
     CCD23011.1 122 LWTLQRKLFNQPSLQSFNLGIFRSDYLIDKTN---FSSIKQVEFNTISVSFAGFSNKVAQLHSHLNRlglyD----PsgknKQVYFDEVPVSNPAN 210
                    ***********999****************75...479*****************************65552....233335666677******** PP

                    xxxxxxxxxxxxxxx................................................................................. RF
  GSH_synth_ATP 183 elaeglakAhkaysk................................................................................. 197
                    ++a++++kA++ ys+                                                                                 
     CCD23011.1 211 GFAKSMKKAIEFYSAsstyttdrelvvafiiqrnernvfdqkciedelwesygiksirltfddvvneleyvkndderrlivkrtgqeiavvyyrtg 306
                    *************777789999************************************************************************** PP

                    ..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxxxxxx..xxxxx RF
  GSH_synth_ATP 198 ..........................PsiatqLagtKkvqqvLakpgvLerfleekeeve.klretFaglysLdkdese.gkeavklal..eepek 263
                                              P+++tqL+gtKk+qq L++++vL++f+ ++ee++ kl++tF+++y+Ld++  e g+ ++kla+  + +e+
     CCD23011.1 307 ytfddyisekdwdarffleqsfaikaPNLLTQLSGTKKIQQLLTDDKVLSQFIGDDEELRaKLNDTFVKIYPLDNT--EmGEMGKKLATdpKLCEN 400
                    ****************************************************965555544************765..44999999999878899* PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP 264 yVLKPqrEGGGnNiYgedipefLkklkeeersaYILMeliepp.avknvlvraegevekeevisELGiygtilfkke.evlvneeaGyllRtKass 357
                    yVLKPqrEGGGnNiY++dip+fL++l+e+e++aYILMeli+ + + +n+++r ++e+    ++sELGiygti+f+++  +++n+  G+llR+K+++
     CCD23011.1 401 YVLKPQREGGGNNIYKKDIPKFLSTLNENEWDAYILMELIHNEpSLDNIICR-NDEIFPLPILSELGIYGTIIFDDKgGIYYNHCPGWLLRSKFET 495
                    ****************************************9987999****9.999******************99989***************** PP

                    xxxxxxxxxxxxxxxxxx RF
  GSH_synth_ATP 358 sdegGVaaGfgvlDsplL 375
                    sdegGV+aGfg+lDs++L
     CCD23011.1 496 SDEGGVVAGFGCLDSVFL 513
                    ****************98 PP

>> GSH_synthase  Eukaryotic glutathione synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.1   2.1e-34   1.9e-30       2     102 ..     236     339 ..     235     340 .. 0.94

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 2.1e-34
                   EEEEEE-TT-TTHHHHHHHHHHHHHCC.-EEEEE-HHHHHHHE.EE...TT-EEEETTT.EEEEEEEECS-SSGGG--SHHHHHHHHHHHHSSSEEE CS
  GSH_synthase   2 ivlfvvqenernvfDqrlleyellekh.ikvirvtleelkeet.kleekekkkllldkk.kevsvvYfRagYapkdypseeeweaRlllErssaikc 95 
                   +v f++q+nernvfDq+++e el+e++ ik+ir+t++++ +e+  ++++++++l+++ + +e++vvY+R+gY+++dy se++w+aR +lE+s aik 
    CCD23011.1 236 VVAFIIQRNERNVFDQKCIEDELWESYgIKSIRLTFDDVVNELeYVKNDDERRLIVKRTgQEIAVVYYRTGYTFDDYISEKDWDARFFLEQSFAIKA 332
                   689************************************999945577789999998778************************************* PP

                   T-HHHHH CS
  GSH_synthase  96 PsiayqL 102
                   P++ +qL
    CCD23011.1 333 PNLLTQL 339
                   ******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.36
# Mc/sec: 4225.79
//
Query:       CCD23012.1  [L=78]
Description: hypothetical protein NDAI_0A08590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 589.59
//
Query:       CCD23013.1  [L=788]
Description: hypothetical protein NDAI_0A08600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-86  288.8  18.0    3.5e-86  288.8  18.0    2.1  2  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
    1.9e-56  190.9  20.0    1.9e-56  190.9  20.0    2.4  2  PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltra
    1.2e-25   90.5   0.7    1.2e-25   90.5   0.7    1.8  2  MIR       MIR domain


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.8  18.0   5.9e-90   3.5e-86       2     244 ..      88     340 ..      87     341 .. 0.96
   2 ?   -4.8   3.6       2.5   1.5e+04     189     240 ..     655     711 ..     647     739 .. 0.53

  Alignments for each domain:
  == domain 1  score: 288.8 bits;  conditional E-value: 5.9e-90
         PMT   2 iltllallirlwrlslpnsvvfdevhfgkfasdYlehsffmdvhpplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsallgslivplv 100
                 i+t+l++++r+++++++ +vv+de+hfgkf+s+Yl+h+f++dvhpplgkml++l+gyLa ++g+++f s   e+yp++ +yv++Rlf+a++++l+vp++
  CCD23013.1  88 IFTALGFFSRMYKIGINDHVVWDEAHFGKFGSYYLRHEFYHDVHPPLGKMLVGLSGYLANYNGSWDFPSG--EKYPDYLDYVKMRLFQATFSALCVPIS 184
                 799*******************************************************************..9************************** PP

         PMT 101 yltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkfe..rkapfsrswwlwllltgvalglavsvKwvglftvllvgllli 197
                 y++++e+gfs  +++l++ lv+ ens+ tl+r+illds+Ll+ t++s+ ++v+f+  +k+pfs++ww++l l+g  lg+a+svK+vglf+++lvg++++
  CCD23013.1 185 YFLAKEIGFSIPVVWLFTCLVICENSYATLGRFILLDSMLLYYTVASVWFFVMFHnqKKTPFSKKWWISLALLGFHLGCAISVKMVGLFIITLVGIYTV 283
                 *********************************************************9***************************************** PP

         PMT 198 welwqllgdkslllksi...........vkhllaralaliviPvtlylavftvhfwll 244
                 ++lw+l+  ++++ +++            +h++ar+++li+iP++++l +f++hf ll
  CCD23013.1 284 VDLWNLIP-ETRSAAQKdknaaawwktyTMHWIARIICLIIIPFLVFLTCFKIHFVLL 340
                 *******7.4444444455667777777***************************987 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 2.5
         PMT 189 vllvgllliwelwqllg.....dkslllksi......vkhllaralaliviPvtlylavftvh 240
                 +l++++++++  wq+++     +      ++        ++      l   P+++ + v +vh
  CCD23013.1 655 MLMILIVIFIFRWQRQLhnfanE------TAmdtfmmGAFYPLLGWGLHYMPFVIMARVTYVH 711
                 33333333333344433222221......1122222223333333445555555555555555 PP

>> PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   4.8       2.8   1.7e+04      77      77 ..     288     288 ..     222     339 .. 0.53
   2 !  190.9  20.0   3.1e-60   1.9e-56       1     199 []     583     782 ..     583     782 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 2.8
    PMT_4TMC  77 l 77 
                 +
  CCD23013.1 288 N 288
                 2 PP

  == domain 2  score: 190.9 bits;  conditional E-value: 3.1e-60
    PMT_4TMC   1 Flkkflelqkamltsnnaltes....hpyaSepyeWplllrgisywtkneekkqiyllGNpvlwwlstiallvfvllllalllrrqrgvkdleeeetr. 94 
                 Fl++f+ l+k m+++nnal+++    + +aS++++Wp+l+ g++++++ +++ +++llG+p+ +w sti+++++++l+++ ++r+qr+++++ +e++  
  CCD23013.1 583 FLSDFIYLNKIMMRTNNALVPDydkyDSLASDAWQWPTLNVGLRLCGWGDDQVRYFLLGSPFSTWPSTITVVMLMILIVIFIFRWQRQLHNFANETAMd 681
                 99*******************77899999***************************************************************4444335 PP

    PMT_4TMC  95 .llnsglflllgwalhylPfflmgRvlflhhYlpAllfailllaalldfllkslkkslkkkklvklivvvvllvlviavFiffspltyGlpgtseevkk 192
                  +++ ++++llgw lhy+Pf++m+Rv+++hhYlpAl+fa+++la+++d +lk+ + ++     + + ++++++v++ia F++fsp+++G++g+ +++k+
  CCD23013.1 682 tFMMGAFYPLLGWGLHYMPFVIMARVTYVHHYLPALYFALIILAYFFDAMLKRFRFNW-----LVMSIFTIYFVAMIAGFVYFSPISFGMTGPVSDYKY 775
                 799************************************************7777776.....7899999999************************** PP

    PMT_4TMC 193 lkwlssW 199
                 l+wls+W
  CCD23013.1 776 LNWLSTW 782
                 ******* PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.6      0.37   2.2e+03     108     132 ..      26      64 ..       4      73 .. 0.58
   2 !   90.5   0.7     2e-29   1.2e-25      11     181 ..     388     553 ..     387     558 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.37
         MIR 108 legfegd..............nDkveifekksttgmksa 132
                 ++++++d               D+ ei+e+ +++ +++a
  CCD23013.1  26 NKSTNDDtikrrnnnkghprdSDNDEIVETTPDKVEEKA 64 
                 333333344444444455544777999999888877765 PP

  == domain 2  score: 90.5 bits;  conditional E-value: 2e-29
         MIR  11 LfHshqdeyltiseqqqkqevflritlypsadaanssraLWeievvqkd........awrgglikwgkvyRlkHlaTgryLaseeekksplseseddqk 101
                 L Hsh ++y+++s+ qq       +t+y   d++n+    W   +++++        +   ++i+ +k+yRl H +T ++L++  + ++ +s ++d + 
  CCD23013.1 388 LLHSHVQTYPEGSNLQQ-------VTCYSYSDSNND----WFFDNIRSRtpynesdpNQPLEFIEPNKPYRLVHKQTRKNLHVSPNVHAHVS-KNDLEV 474
                 78***************.......************....********998887777779**************************555555.669999 PP

         MIR 102 evsayglegfegdnDk..veifekksttgmksaklvprdsyvrlqHvvtgcwLhstsvklkkekfekvqqkvicakekedke 181
                  +  yg+e+ +++ D+  +ei ++ks++ ++++++ p ++++r++ +v++c+L  t+ +l++++ +  q++v+c+k+ ++++
  CCD23013.1 475 AGNGYGFEQGDNG-DNwiIEIIDQKSSKSENTSQIHPLTTTFRIKNIVSDCYLIQTEHNLPDWGYR--QSEVTCSKKVSKTD 553
                 9999999887555.4457************************************************..********998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1150  (0.0641419); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.46
# Mc/sec: 5183.89
//
Query:       CCD23014.1  [L=868]
Description: hypothetical protein NDAI_0A08610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-92  306.7   1.1      1e-91  305.9   1.1    1.4  1  LDB19       Arrestin_N terminal like
    0.00023   21.3   0.4    0.00069   19.7   0.1    2.0  2  Arrestin_N  Arrestin (or S-antigen), N-terminal domain
  ------ inclusion threshold ------
        3.4    7.3   5.7        6.7    6.3   5.7    1.5  1  UBM         Ubiquitin binding region


Domain annotation for each model (and alignments):
>> LDB19  Arrestin_N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.9   1.1   1.7e-95     1e-91       1     193 []     169     360 ..     169     360 .. 0.97

  Alignments for each domain:
  == domain 1  score: 305.9 bits;  conditional E-value: 1.7e-95
       LDB19   1 lklklvkkvhvkkpfvadlsaiqtCsaCktkteelksWdlqkntkdlkvGsysyPfsylipGslpassslgsnaetkvkyeliavvvykdptprkgass 99 
                 ++l+l++k+h +kpfv+d + i+tC++C+tk++++k+W++qk ++  +vG+++yPfsylipGs+p+++ lgsn+e +vkyeliavv+ykd  prk++s 
  CCD23014.1 169 VTLTLIQKIHYHKPFVPDSQQINTCMNCRTKITDMKNWNIQKTAQSKSVGTHTYPFSYLIPGSVPSTALLGSNSESQVKYELIAVVTYKD--PRKKSSN 265
                 79***************************************************************************************9..7777776 PP

       LDB19 100 .skeellklamPikvkravlrgPdknslrvfPPtelvatavlPsvvyPksafplelkleGvsegdrrWrlrkltWrieettrikshaCdkhkhel 193
                  + e+ll+l+mPi+v+r++ rgPdknslrvfPPtel+a+avlP+v+yPks+fple+kl+Gvs+g rrWr+rkl+Wrieettri+shaC++hkhel
  CCD23014.1 266 tDNEKLLQLSMPIAVTRSITRGPDKNSLRVFPPTELTAAAVLPNVIYPKSTFPLEMKLDGVSSGTRRWRMRKLSWRIEETTRIRSHACEVHKHEL 360
                 478999***************************************************************************************96 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.2e-07   0.00069      32     128 ..     166     262 ..     155     278 .. 0.63
   2 ?   -3.7   0.0       1.9   1.1e+04      30      49 ..     503     522 ..     493     531 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.2e-07
                 .CEEEEEEEEEEEESSSSTTTTCCCEEEEEEEEEEEEESTSSSSS.SSSSHHHHHHHH-TTEEEEEE---TTS--SE...CSGEEEEEEEEEEEEECCC CS
  Arrestin_N  32 arkvkielsgkartgweesevagktfrkdltlkkkqeyleteksllkskkdsqekLpkGehafpFsfelPknlpsSf...eGkaggvrYevkvtldrpw 127
                 +++v+++l  k+++++       ++++ + ++++k  + +++  +++ +k++q+k + G+h++pFs+ +P ++ps+      +  +v+Ye+ ++++ ++
  CCD23014.1 166 VTSVTLTLIQKIHYHKPFVP-DSQQINTCMNCRTK--ITDMK--NWNIQKTAQSK-SVGTHTYPFSYLIPGSVPSTAllgSNSESQVKYELIAVVTYKD 258
                 55555555555555555222.23444444444443..33333..34443333333.55*****************9998878889*****999988777 PP

                 ...E CS
  Arrestin_N 128 ...k 128
                    k
  CCD23014.1 259 prkK 262
                 4332 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.9
                 TT.CEEEEEEEEEEEESSSS CS
  Arrestin_N  30 kkarkvkielsgkartgwee 49 
                 +  ++v+i ++g+++ gw+ 
  CCD23014.1 503 LFTEEVRIIAKGDMKSGWKT 522
                 44478999999999999985 PP

>> UBM  Ubiquitin binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.7    0.0011       6.7      18      33 ..     473     488 ..     473     490 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0011
         UBM  18 PpdLReEVLaqqdeeq 33 
                 +++LR+E+L+qq++ +
  CCD23014.1 473 DDALRQEILQQQQRLR 488
                 579*********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1199  (0.0668749); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 6047.69
//
Query:       CCD23015.1  [L=307]
Description: hypothetical protein NDAI_0A08620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-41  139.9   0.7    5.8e-41  139.9   0.7    2.2  3  Ribosomal_L28e  Ribosomal L28e protein family
    6.2e-30  103.8  17.4    6.2e-30  103.8  17.4    2.6  2  Mak16           Mak16 protein C-terminal region
    7.5e-06   25.6  26.5    9.5e-06   25.2  26.5    1.1  1  BUD22           BUD22
  ------ inclusion threshold ------
       0.13   10.8  33.6       0.16   10.6  33.6    1.1  1  TFIIF_alpha     Transcription initiation factor IIF, alpha su
       0.15   12.8   6.5       0.87   10.4   0.1    3.1  3  DUF2462         Protein of unknown function (DUF2462)
       0.47   10.2   5.8       0.87    9.3   5.8    1.6  1  PYC_OADA        Conserved carboxylase domain
          1    9.6  25.6       0.19   12.0  11.9    2.5  2  DUF4611         Domain of unknown function (DUF4611)


Domain annotation for each model (and alignments):
>> Ribosomal_L28e  Ribosomal L28e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.9   0.7   2.2e-44   5.8e-41       1     114 [.       5     117 ..       5     118 .. 0.94
   2 ?   -2.4   0.0       3.1   8.1e+03      67      81 ..     146     160 ..     127     173 .. 0.55
   3 ?   -1.5   0.6       1.6   4.2e+03      62      81 ..     273     293 ..     266     306 .. 0.74

  Alignments for each domain:
  == domain 1  score: 139.9 bits;  conditional E-value: 2.2e-44
  Ribosomal_L28e   1 LiWelvrnnnsFlvkt.rtsnkqtFsrepyNltglhsrkysglanskavtVreekkgvvlvtkkkerahkpakawekvklsknsrkalkqiakll 94 
                     ++W+++  n+sF   + +   +qtF+r+pyN+tgl++r++++lansk++tVr++k++++l++k++erah+pak+we++klskn++kalkqi+++l
      CCD23015.1   5 VVWQVI--NQSFCSHRiKAPSGQTFCRDPYNVTGLCTRQSCPLANSKYATVRSDKGRIYLYMKTPERAHTPAKLWERIKLSKNYSKALKQIDEHL 97 
                     79****..66666665557789************************************************************************* PP

  Ribosomal_L28e  95 kkyrpdlrkaalaRlskitq 114
                      + +++ ++++++R++k+tq
      CCD23015.1  98 LHWNNFFIHKCKQRFTKLTQ 117
                     878***************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.1
  Ribosomal_L28e  67 ahkpakawekvklsk 81 
                     +++ +ka+  +k++k
      CCD23015.1 146 QNRERKALASAKIEK 160
                     233334444444433 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.6
  Ribosomal_L28e  62 kkkerahkpakawekvkls.k 81 
                     kk ++++ p+++  kv+++ +
      CCD23015.1 273 KKRKKSKAPKSKRPKVEIEfE 293
                     777888999999888888743 PP

>> Mak16  Mak16 protein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8  17.4   2.4e-33   6.2e-30       2      99 ..     139     238 ..     138     240 .. 0.81
   2 ?   -7.6  16.8         7   1.8e+04      58      98 ..     256     301 ..     238     303 .. 0.43

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 2.4e-33
       Mak16   2 kKverRekrReeKAlaAAklekaIekeLleRLksgaYgd.iynveekafkkvlekeeeeeeeeeeeeeeeeeeeeeeeeegeveyvede.e.eeeeled 97 
                 +Kv+rRe++Re+KAla Ak+ekaIekeLl+RLksgaYgd ++nv+ek++kkv+ k ++e+ee  eeee+ +eeeeee++egeveyv+d+ e e  +++d
  CCD23015.1 139 PKVKRREQNRERKALASAKIEKAIEKELLDRLKSGAYGDkPLNVDEKIWKKVMGKLDDEQEE-LEEEEDWDEEEEEESDEGEVEYVADDaEgEYVDVDD 236
                 8****************************************************999744443.34444444455666677*******642456677777 PP

       Mak16  98 le 99 
                 le
  CCD23015.1 237 LE 238
                 76 PP

  == domain 2  score: -7.6 bits;  conditional E-value: 7
       Mak16  58 e..eeeeeeeeeeeeeeeeeeeeee.....geveyve.deeeeeeledl 98 
                 +  ++e +++eee +++++++   +     +++  ve + eee+el++ 
  CCD23015.1 256 SdeDSESNDDEEEATDSKKRK---KskapkSKRPKVEiEFEEEHELQNN 301
                 111222222222222211222...1234666667777444677777665 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2  26.5   3.7e-09   9.5e-06     125     268 ..     125     286 ..      64     302 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 3.7e-09
       BUD22 125 eeivesvkkllgiekkkkkkeeekkkkkkkkkkkkkkeeee......................eeesdkeeesedsedeekeeseddeeeeeededded 201
                  +  e+ +  +gi +k k++e+++++k+ +++k +k+ e+e                      +   +   + +d    e+ee e++e+ +ee+e+++d
  CCD23015.1 125 LALREDERHYVGIAPKVKRREQNRERKALASAKIEKAIEKElldrlksgaygdkplnvdekiwK---KVMGKLDD----EQEELEEEEDWDEEEEEESD 216
                 3444555777888887777777777777777777788888888998888888777766653332...22222222....33333444444444444444 PP

       BUD22 202 aee...deedeeaeerelaqydg.llasddededeyneetdeesseesdssdssesasesesessekkkkk 268
                 ++e    ++d+e e  ++ ++++ l++sd ed+++++e++de+s++++d++++++s+++++s+++++ k++
  CCD23015.1 217 EGEveyVADDAEGEYVDVDDLEKwLADSDREDASSDEESSDEDSESNDDEEEATDSKKRKKSKAPKS-KRP 286
                 444455778899999999999997777*******777777777777777777777766666666655.222 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  33.6   6.1e-05      0.16     128     351 ..      61     289 ..      53     304 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.1e-05
                  EEEEEETTSEEEEEEEEEEEEEEEGGCS.TXX.SSTTTHHHHHHH..XSSSXSHHHHHHXXXXXX.....XXXXXXX......XXXXXXXXX....XX CS
  TFIIF_alpha 128 yvltkapdgafeAypvneWynFnpvary.ktL.tleeAEeeferR..kktlngfslmlkkalkkgeaavgdedeeeek.....kkgggGrsk....dL 212
                  y+++k+p+ a    p++ W + +  ++y k+L +++e   ++++   +k  + f+ + + a+ +   a  +++ +  +     k++++ r++      
   CCD23015.1  61 YLYMKTPERA--HTPAKLWERIKLSKNYsKALkQIDEHLLHWNNFfiHKCKQRFTKLTQVAITERRLALREDERHYVGiapkvKRREQNRERkalaSA 156
                  5666666555..44555555555555543445235666666666322566666777666666666666666666554444444555555555434445 PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX CS
  TFIIF_alpha 213 kikdkegddeedsdesdkgdededeekkkkKkkkkaknkkkldddkkkkrgsdddadeydsddGddegrEldyisDdsase.ndpeeredkkseEeee 309
                  ki++  + +  d  +s++ ++   +  +  K  kk   +k   dd+++  ++++d de++ +  +  + E+ y+ Dd + e  d ++ e+ +++ + e
   CCD23015.1 157 KIEKAIEKELLDRLKSGAYGDKPLNVDE--KIWKK-VMGKL--DDEQEELEEEEDWDEEEEE--ESDEGEVEYVADDAEGEyVDVDDLEKWLADSDRE 247
                  6666655555555555555544433333..33343.33444..4554555666666663333..3334578888877665526999999999999999 PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS
  TFIIF_alpha 310 kkeieqdedeeekeeekkeeegklskkkkkakklkkkkkekd 351
                      +++ ++e++e++++eee   skk+kk k +k+k  + +
   CCD23015.1 248 DASSDEESSDEDSESNDDEEEATDSKKRKKSKAPKSKRPKVE 289
                  9999999999999999999*************9999987763 PP

>> DUF2462  Protein of unknown function (DUF2462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.37   9.5e+02      36      58 ..      74      96 ..      47      99 .. 0.77
   2 ?   10.4   0.1   0.00034      0.87      30      63 ..     136     169 ..     118     180 .. 0.91
   3 ?    3.5   0.4     0.048   1.2e+02      19      37 ..     267     285 ..     251     306 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.37
     DUF2462 36 aklvkqqklkkklsaglnkktEk 58
                akl +  kl k++s++l++  E+
  CCD23015.1 74 AKLWERIKLSKNYSKALKQIDEH 96
                347888899******99876665 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00034
     DUF2462  30 viaPKkaklvkqqklkkklsaglnkktEkelasr 63 
                  iaPK ++  ++++ k   sa++ k +Ekel  r
  CCD23015.1 136 GIAPKVKRREQNRERKALASAKIEKAIEKELLDR 169
                 69****************************9887 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.048
     DUF2462  19 kkaknpkkgarviaPKkak 37 
                 + a   kk ++  aPK+++
  CCD23015.1 267 EEATDSKKRKKSKAPKSKR 285
                 4444455556666666554 PP

>> PYC_OADA  Conserved carboxylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.8   0.00034      0.87      73     138 ..     155     218 ..     141     301 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00034
                 TS.TTSS--HHHHHHHT.TSS---SS---HHHHHHHHT.-----S-GGGG---.-HHHHHHHTTTTS CS
    PYC_OADA  73 eegrykdipdsvvdllk.GelGkppggfpeelvkkvlkgeepitsrpadslepedleklrkeleeka 138
                   + +k i +++ d lk G +G  p +++e+++kkv+ +   ++ +++++ e+ed++++++e +++ 
  CCD23015.1 155 SAKIEKAIEKELLDRLKsGAYGDKPLNVDEKIWKKVMGK---LDDEQEELEEEEDWDEEEEEESDEG 218
                 455677778887765544*******************53...3455555555556776666655544 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   5.7     0.036        92      55      80 ..     195     220 ..     154     230 .. 0.72
   2 ?   12.0  11.9   7.3e-05      0.19      50      95 ..     242     287 ..     232     288 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.036
     DUF4611  55 qddvaaagdeeeegededdeeeekni 80 
                  d++++ ++ee+ +e+e++e++e ++
  CCD23015.1 195 DDEQEELEEEEDWDEEEEEESDEGEV 220
                 34444455555556666666666555 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7.3e-05
     DUF4611  50 veqeaqddvaaagdeeeegededdeeeekniknktksdePpaKrtK 95 
                  + + +d   ++++++e++e +ddeee  + k+++ks+ P +Kr+K
  CCD23015.1 242 ADSDREDASSDEESSDEDSESNDDEEEATDSKKRKKSKAPKSKRPK 287
                 455666666777777777788888888889999************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2122  (0.118356); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.43
# Mc/sec: 2146.83
//
Query:       CCD23016.1  [L=454]
Description: hypothetical protein NDAI_0A08630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-16   60.5   0.2    6.6e-14   51.3   0.1    2.5  2  Aldedh           Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.012   15.5   0.2      0.059   13.4   0.1    2.2  2  Phage_sheath_1C  Phage tail sheath C-terminal domain
      0.095   11.8   0.0       0.17   11.0   0.0    1.4  1  URO-D            Uroporphyrinogen decarboxylase (URO-D)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.1   1.1e-17   6.6e-14      30     281 ..       3     270 ..       1     297 [. 0.81
   2 !    6.7   0.0   0.00038       2.2     381     431 ..     340     390 ..     329     410 .. 0.86

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 1.1e-17
                 HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHH.HHH.HSE.EE............. CS
      Aldedh  30 dvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyael.aek.leg.ev............. 111
                 +++++ ++A+ a ++ ++++ e+R++iL+k++d+l++++  + ++  l+     ++     + + +d +    +   ++ l+g +              
  CCD23016.1   3 TAEQIAKKARIAGNSLKTISNENRSAILYKIHDALKADASTIEQANKLDLQLAQENHLSdSLLKRLDLF---KGDkFDTmLQGiKDvadledpvgkikm 98 
                 5788999999999*******************************9999987555555553333444333...322122222332113344456666443 PP

                 EEEC...TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT........TS-TTSEEE--SSTCCHHHH CS
      Aldedh 112 lpss...egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea........glPkgvlnvvtgsgsevgea 199
                 +  +   eg + + +  P+Gv ++I  ++    ++a  +a ++  GN+ +lK  +e++++   +a++++e         g+P g+++++ +  ++v + 
  CCD23016.1  99 A--ReldEGLTLYQVTAPVGVLLVI--FESRPEVIANITALCIKSGNSGILKGGKESVHTFREMAKIINETiekyheetGVPVGAVQLIET-RQDVNDL 192
                 2..1455999999999*********..899999************************************9999999999**********88.899**** PP

                 HHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHH CS
      Aldedh 200 lvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesi 281
                 l +++ +d+v   Gs++  r+i  + +    +v+    G  ++ v +daDl+ka + ++ + + +    C a++ ll++ s+
  CCD23016.1 193 LSQDEYIDLVVPRGSNALVRNIKDSTK---IPVLGHADGICSIYVDKDADLEKAKRITLDAKTNY-PAGCNAMETLLINPSL 270
                 **********************99988...9**********************988888876654.5678888888887764 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00038
                 SSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--T CS
      Aldedh 381 kdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaa 431
                  + + ai+  N      + +++t++ + ae + + ++   vy+N st++a 
  CCD23016.1 340 TSTQAAINHINLHSSRHTDAIITENKDDAELFLKGVDSSGVYWNASTRFAD 390
                 466778***************************************987765 PP

>> Phage_sheath_1C  Phage tail sheath C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   9.8e-06     0.059      40      89 ..     287     337 ..     276     351 .. 0.79
   2 ?   -2.5   0.0      0.82   4.9e+03      65      93 ..     363     391 ..     358     394 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.8e-06
                      HHHHHHHHHHHHHHHHHHTTSB-S--STTSEEEECSSSSTTEEEE.EEEE- CS
  Phage_sheath_1C  40 gralvksalnaylkelqregaienfdnksdleveakntdkdrlvv.kinvk 89 
                      +  ++ +   ay+k+l+++g ++++   s+++v++++++ +++++ +++vk
       CCD23016.1 287 TLHVMNDVKEAYFKQLESLGRLDDVIKSSTVDVNESKDFDKEFLSlDCAVK 337
                      55566666689************************7777777654155555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.82
                      -STTSEEEECSSSSTTEEEEEEEE-BSSS CS
  Phage_sheath_1C  65 dnksdleveakntdkdrlvvkinvkpvns 93 
                      +nk d e+  k+ d+  ++++++    + 
       CCD23016.1 363 ENKDDAELFLKGVDSSGVYWNASTRFADG 391
                      46778888888999999999988766655 PP

>> URO-D  Uroporphyrinogen decarboxylase (URO-D)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.9e-05      0.17     199     271 ..     178     254 ..     111     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.9e-05
                 SEEEEEE...TTGGGS-HHHHHHHTHHHH.HHHHHHHHH.H--S-EEEEESSHH.HHHHHHTTS-.-SEEE--TTS-H CS
       URO-D 199 daiqifD...swagllspedfeefvlpyl.krivdevkaegpkvpvilfikgagaeiledlaelg.advlsldwtvdl 271
                  a+q+ +     ++lls++ + ++v+p   + +v+++k+ + k+pv+ ++ g  + ++++ a+l+ a+ + ld +++ 
  CCD23016.1 178 GAVQLIEtrqDVNDLLSQDEYIDLVVPRGsNALVRNIKDST-KIPVLGHADGICSIYVDKDADLEkAKRITLDAKTNY 254
                 368888878899***************75499*******98.6*********99889999999887888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3720.82
//
Query:       CCD23017.1  [L=607]
Description: hypothetical protein NDAI_0A08640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.79   10.0  13.8      0.087   13.0   2.3    2.7  3  FliJ           Flagellar FliJ protein
        0.8    9.1   7.8      0.045   13.2   0.6    2.3  2  Peptidase_C98  Ubiquitin-specific peptidase-like, SUMO isopep


Domain annotation for each model (and alignments):
>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.8       1.3   1.2e+04      80     102 ..      49      71 ..      42      80 .. 0.64
   2 ?    5.1   0.1    0.0028        25      35     100 ..     200     265 ..     191     277 .. 0.83
   3 ?   13.0   2.3   9.7e-06     0.087       8      96 ..     474     557 ..     463     569 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.3
        FliJ  80 eewqearqerkklekLkerekke 102
                 ++ +++r + k+ ++L  r+  +
  CCD23017.1  49 KKNLSKRSRNKSEKYLSSRYDLD 71 
                 44456666777777777766554 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0028
        FliJ  35 lsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerkklekLkerek 100
                  +++++  s++ ++ +++  +++++  +q +q+l+ ++ + +k+ ++  + +    + + L +++k
  CCD23017.1 200 RQSSFNSPSVSPFKRRSSTVNRMRTSFSQSQQQLTPLNTNTKKKTQRSNSSNTSSTATDCLSDKRK 265
                 333445668999999**************************9999999998888888888888876 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 9.7e-06
        FliJ   8 aeaqrelqqaeekleeleqyrq.eyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqvekareewqearqerkklekLk 96 
                  + + +lqq++++++ l ++++  y +   +e+      +  n  +f s+l+e +++  ++l+ +ek++e ++++++e+r   ++l+ L 
  CCD23017.1 474 DSLNLNLQQMKSNIDDLYNTIKiTYLNHVHEEF------DTTNPDSFESQLNESVNESVKQLEILEKKMESCQKKLLEQREVMRQLDNLV 557
                 444555556666666665555523444445554......999999***********************************9999999875 PP

>> Peptidase_C98  Ubiquitin-specific peptidase-like, SUMO isopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6     5e-06     0.045      35      98 ..     213     276 ..     201     290 .. 0.87
   2 ?   -1.5   1.4      0.15   1.4e+03      40      83 ..     465     507 ..     436     579 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5e-06
  Peptidase_C98  35 seeeslvkrlltkyeqaqallketqkkkakeevvkvpsdvlekaeeeLeevRkkvfkklqpkLk 98 
                    ++++s+v+r+ t+++q q+ l+  +++++k++ ++ +s++ + a+ +L++ Rk v + lqpk++
     CCD23017.1 213 KRRSSTVNRMRTSFSQSQQQLTPLNTNTKKKTQRSNSSNTSSTATDCLSDKRKLVNEFLQPKMN 276
                    578899*****************9999788888888999***********************95 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.15
  Peptidase_C98  40 lvkrlltkyeqaqallketqkkkakeevvkvpsdvlekaeeeLe 83 
                     + r+++k+++++  l++++++   + ++ +  + l++++ee +
     CCD23017.1 465 DLLRMVNKFDSLNLNLQQMKSN-IDDLYNTIKITYLNHVHEEFD 507
                    4555555555555555555554.222222222233333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2234  (0.124603); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4161.24
//
Query:       CCD23018.1  [L=1580]
Description: hypothetical protein NDAI_0A08650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.2e-280  931.7  18.8   2.2e-280  931.7  18.8    1.7  2  Myosin_head   Myosin head (motor domain)
      4e-26   91.3   0.4      4e-26   91.3   0.4    2.5  2  DIL           DIL domain
    3.8e-08   32.4  18.1       0.13   12.1   0.5    6.0  5  IQ            IQ calmodulin-binding motif
     0.0032   17.7   0.8      0.014   15.7   0.0    2.5  2  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.026   14.4   0.1      0.076   12.9   0.1    1.8  1  Myosin_N      Myosin N-terminal SH3-like domain
       0.14   12.6   0.0       0.14   12.6   0.0    3.1  2  ABC_tran      ABC transporter
       0.23   11.8   2.6       0.49   10.8   0.0    2.8  2  AAA_16        AAA ATPase domain
        1.7    9.3   4.9       0.67   10.6   0.3    2.8  2  HSF_DNA-bind  HSF-type DNA-binding
        9.9    6.1  21.1         50    3.8   0.0    4.8  3  T6PP_N        Trehalose-6-phosphate phosphatase N-terminal he


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  931.7  18.8  1.1e-283  2.2e-280       1     677 []      73     779 ..      73     779 .. 0.95
   2 ?   -6.7   4.5         9   1.8e+04     499     557 ..    1012    1071 ..     969    1100 .. 0.55

  Alignments for each domain:
  == domain 1  score: 931.7 bits;  conditional E-value: 1.1e-283
                  -SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S.TSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSS CS
  Myosin_head   1 vedlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklk.iysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAG 97 
                  +edl++Ls+lne++vl+++k+Ry++ +iYtysg+vl+a+nP+++++ +ys+d+i+ay+gk+r e++PH+faia+eay  +++dk+nq+i++sGEsGAG
   CCD23018.1  73 TEDLTSLSYLNEPAVLHAIKQRYAQLNIYTYSGIVLIATNPFDRMDqLYSQDMIQAYSGKRRGEMEPHLFAIAEEAYSLMKHDKQNQTIVVSGESGAG 170
                  69*******************************************99*************************************************** PP

                  HHHHHHHHHHHHHHHSSSSSC........TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---TT CS
  Myosin_head  98 KteatKkvlqylasvaeskek........veeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqake 187
                  Kt+++K++++y+asv+e++++        +e++e eekil++nPi+EafGnAkt+rndnssRFGK++ei fd++++i+gaki+tYLLE+sR+v+q k+
   CCD23018.1 171 KTVSAKYIMRYFASVEEENSSnmgnlqhqAEMSETEEKILATNPIMEAFGNAKTTRNDNSSRFGKYLEILFDKETSIIGAKIRTYLLERSRLVYQPKS 268
                  ******************9999*****99999****************************************************************** PP

                  --SBHHHHHHHHCSTHHHHHHTT--TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEESS CS
  Myosin_head 188 ERnyHiFYqllagaseeekkelkledvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqavled 285
                  ERnyHiFYq+lag++++ k++l l++++dy y++q+ge++++g+dd++e+++t++al+++g++ ++q++if+i+aa+lh+Gnie+kk+++d+ + ++d
   CCD23018.1 269 ERNYHIFYQILAGLPQDIKTQLYLTKAEDYFYMNQGGETKIKGMDDAREYQITVEALSLVGIDTTTQHHIFQILAALLHIGNIEIKKTRNDA-SLSSD 365
                  *****************************************************************************************995.89999 PP

                  HHHHHHHHHHHTS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS..-S-SEEEEEEEEE-B---SSB- CS
  Myosin_head 286 eeklekaaellgvdaeelekalvkrriktgkevvskalnveqaevardalakaiyerlFdwlverinkslekkk..eekksfiGvLDiaGFEifekns 381
                  +++l++a+ellg+d ++++k+++k++i t++e+++++ln  qa vard++ak+iy+ +Fdwlv++in++l++    ++ ksfiGvLDi+GFE+fekns
   CCD23018.1 366 DKSLKIACELLGIDPSNFAKWITKKQIITRSEKIVSNLNFGQALVARDSVAKFIYSAMFDWLVTNINTVLCNPDviDQVKSFIGVLDIYGFEHFEKNS 463
                  999********************************************************************99877899******************* PP

                  HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHHTTST...TEEETT CS
  Myosin_head 382 FEqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkplGilslLdeecllpkatdetfleklvkafskha...kfeksr 476
                  FEq+ciny+nEkLqq Fn++v+klEqeeYv+E+iew+fi+f  dnq++idLie+k lGilslLdee++lp ++de++++kl+++ +k +    f+k+r
   CCD23018.1 464 FEQFCINYANEKLQQEFNQHVFKLEQEEYVKEEIEWSFIEF-NDNQPCIDLIENK-LGILSLLDEESRLPAGSDESWTQKLYQTLDKPPtnkVFSKPR 559
                  *****************************************.6***********6.*****************************9977565898888 PP

                  STTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCH..............B--.........CSSSECCCCCSBHHH CS
  Myosin_head 477 lkkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeek..............eakaeakksekkkkkkkkkkkfktvgs 560
                     g++kF+++HyA +v+Y++egf+eKn+Dt+++ ++e+lk+s++  l ++ +++e+              +++a++ +++k    + +++k+ t+gs
   CCD23018.1 560 --FGQTKFVVSHYALDVSYDTEGFIEKNRDTVSDGHLEVLKASTNATLINIIDSMEReaqkledakkaeqeANNAKSMQKKKPGPMRGTSHKKPTLGS 655
                  ..6**************************************************99999999999876543222222222333334456778899**** PP

                  HHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS........SSSHHH CS
  Myosin_head 561 kfkeslaeLmktlestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkl.......lkedakk 651
                  +fk sl eLm+t++stn+h++RCikpn +k+a+k+d+ +vl+qlr++Gvle+iri++aGfp+R+tf+efv rY++l++ + +++       +++d  +
   CCD23018.1 656 MFKVSLIELMQTINSTNVHYIRCIKPNGEKEAWKFDNIMVLSQLRACGVLETIRISCAGFPSRWTFNEFVLRYYILISPNEWSQifqnhnsTENDVIE 753
                  **************************************************************************99876665666888888889999* PP

                  HHHHHHHHTTS-GCGEEECSSEEEET CS
  Myosin_head 652 aveailkeleldkeeykiGktKiFfr 677
                   +++il ++ +dke+y+iG+tKiFf+
   CCD23018.1 754 LCKKILAATVQDKEKYQIGNTKIFFK 779
                  *************************8 PP

  == domain 2  score: -6.7 bits;  conditional E-value: 9
                   THHHHHH----HHHHHHHHTSSS.HH.HHHHCCSHCHB--.........CSSSECCCCCSB CS
  Myosin_head  499 gfleKnkDtlnedlvellksskk.kl.laelfkeeekeakaeakksekkkkkkkkkkkfkt 557 
                   +f+eK kD ln++l+++ k+ ++ +l +a++  ++e+ ++ + k+ ++ +++kk+ +  +t
   CCD23018.1 1012 EFIEKTKD-LNAQLESANKQMEDaQLeIANIKAQHEQLKEDAGKQLQELDETKKQLADANT 1071
                   56777666.5555665555555522213344333333222222222222333333333333 PP

>> DIL  DIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2       8.1   1.6e+04      58      81 ..     955     978 ..     933     994 .. 0.65
   2 !   91.3   0.4     2e-29     4e-26       5     103 ..    1397    1493 ..    1394    1494 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 8.1
                 HHHHHHHHHHHC-S--HHHHHHHC CS
         DIL  58 apliqaaqllqlpkssledlesil 81 
                 +++i+++q l+++ ++ ++l+++l
  CCD23018.1 955 NKVIELTQNLAMKVKENKTLSASL 978
                 467777777777777555555444 PP

  == domain 2  score: 91.3 bits;  conditional E-value: 2e-29
                  HHHHHHHHHHHHHHHHHS-SB-HHHHHHHHHHHHHHHHCCTS-.....-GGGGHHHHHHHHHHHC-S--HHHHHHHC.TT-TSS-HHHHHHHHTTB- CS
         DIL    5 qlfyfinaelfNrlllrkklcsrskGlqlrrnlslledWaeeqgleeaaekhlapliqaaqllqlpkssledlesilrstcpaLnsaQlkrllenYr 101 
                   l+++++a +fN+l+++++++s+++Glql++n+++le+W++++gl  +  ++l++liq+a+llql+k s ed++ ++  +c++L+++Ql++l+++Y+
  CCD23018.1 1397 TLLNYVDAICFNDLIMKRNFLSWKRGLQLNYNVTRLEEWCKTHGLP-DGAQYLQHLIQTAKLLQLRKYSIEDIDIVR-GICSSLSPSQLQKLISQYH 1491
                  6899*****************************************7.5589*****************999997777.******************8 PP

                  -T CS
         DIL  102 pe 103 
                   +
  CCD23018.1 1492 VA 1493
                  75 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.5   6.4e-05      0.13       2      20 ..     796     814 ..     795     815 .. 0.94
   2 ?    4.8   0.0     0.015        30       7      19 ..     824     836 ..     818     838 .. 0.86
   3 !    8.4   0.5     0.001         2       2      17 ..     844     859 ..     843     863 .. 0.85
   4 !    8.0   0.0    0.0014       2.8       2      14 ..     892     904 ..     891     907 .. 0.91
   5 !    6.8   1.7    0.0033       6.6       1      21 []     914     934 ..     914     934 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.4e-05
                 HHHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkry 20 
                 ka+i+IQ+++R    Rk+y
  CCD23018.1 796 KAIILIQKHIRSKYYRKHY 814
                 8****************99 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHH CS
          IQ   7 IQaawRGylaRkr 19 
                  Q+ +RG laR r
  CCD23018.1 824 VQSTVRGKLARLR 836
                 6**********76 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaR 17 
                 ++ai IQ  +RGy  R
  CCD23018.1 844 QSAIAIQTIYRGYSKR 859
                 69***********766 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0014
                 HHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGy 14 
                 +aai+IQ+ +R +
  CCD23018.1 892 DAAITIQSKIRSF 904
                 79*********98 PP

  == domain 5  score: 6.8 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHHHHHHHHHHHH CS
          IQ   1 rkaaikIQaawRGylaRkryk 21 
                 rk  i+ Q+ +R+  aR+ +k
  CCD23018.1 914 RKNTIVVQSLIRRRIARRTLK 934
                 6789*************9765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.8e-06     0.014       3      70 ..     156     225 ..     153     248 .. 0.63
   2 ?   -3.2   0.3       4.8   9.5e+03      50     103 ..     981     995 ..     927    1035 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 6.8e-06
      AAA_22   3 ktagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv..fvtlpsstsskdl.lrellralglelka 70 
                 k+ + +vv GesG+GKT++++ +++ +  +++ +  + + +    ++++ +  k l  + + +a+g+ + +
  CCD23018.1 156 KQNQTIVVSGESGAGKTVSAKYIMRYFASVEEENSSNMGNLqhQAEMSETE-EKILaTNPIMEAFGNAKTT 225
                 577889****************99999777666654444442122222222.2222355566666655555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.8
      AAA_22  50 stsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh.l 103
                 + +                                        ++ +  E q  l
  CCD23018.1 981 LQK----------------------------------------KVALTNELQLaL 995
                 222........................................222222222222 PP

>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   3.8e-05     0.076       1      20 [.       7      26 ..       7      31 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.8e-05
                SEEEEETTSTTS-EEEEEEE CS
    Myosin_N  1 KklVWVpDpkegyvkGeIke 20
                ++++W+p +++g++ +e+++
  CCD23018.1  7 GTRCWYPNKEQGWIGAEVTK 26
                589***************95 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.3e-05      0.14       9      65 ..     156     211 ..     154     304 .. 0.73
   2 ?   -6.7   7.0         9   1.8e+04      79      95 ..    1002    1041 ..     947    1137 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.3e-05
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlp 65 
                 k+++++++ Ge+GaGK+  +k +++     e+e   ++ +l++ + e ++ e ++l 
  CCD23018.1 156 KQNQTIVVSGESGAGKTVSAKYIMRYFASVEEENSSNMGNLQH-QAEMSETEEKILA 211
                 57899*********************99999998888888888.3333333333333 PP

  == domain 2  score: -6.7 bits;  conditional E-value: 9
                  H.......................HHHTCHHHHHHHSTTG CS
                  x.......................xxxxxxxxxxxxxxxx RF
    ABC_tran   79 n.......................esdeeiekalsklglk 95  
                  +                        +++++e+a  ++ ++
  CCD23018.1 1002 HlkdlddqriefiektkdlnaqleSANKQMEDAQLEIANI 1041
                  2444444444444444422222222222222222222222 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00025      0.49      22      48 ..     156     182 ..     143     275 .. 0.83
   2 ?   -3.4   3.1       5.5   1.1e+04      46      46 ..     993     993 ..     882    1083 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00025
      AAA_16  22 grpelvllsGesGvGKsslvrellral 48 
                  + + +++sGesG GK+  ++ ++r++
  CCD23018.1 156 KQNQTIVVSGESGAGKTVSAKYIMRYF 182
                 344789**************9999643 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 5.5
      AAA_16  46 r 46 
                  
  CCD23018.1 993 L 993
                 1 PP

>> HSF_DNA-bind  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   0.00034      0.67      44      90 ..     442     493 ..     431     498 .. 0.76
   2 ?   -2.4   0.6         4   7.9e+03       1      51 [.    1354    1421 ..    1354    1439 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00034
                   --HHHHHHHHHHTTEEE---SSB.....TTB--TTSEEEEESS--XXXXXXX CS
  HSF_DNA-bind  44 snfssFvrqLnlYgFrkvkrkee.....kkkkkskvweFshenFkrgkpelL 90 
                   ++++sF+  L +YgF+  ++++      +  +++ ++eF+++ Fk +++e +
    CCD23018.1 442 DQVKSFIGVLDIYGFEHFEKNSFeqfciNYANEKLQQEFNQHVFKLEQEEYV 493
                   689*************977544477886444554556999999998887765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4
                    HHHHHHHHHCT...TTT......SEESSSSSEEEES-HHHHHHHTHH...........HHSTT--HHHHHH CS
  HSF_DNA-bind    1 FlkkLyklled...eel......isWsedgksfvvkdkeefakevlp...........kyfkhsnfssFvr 51  
                    Fl+kL++  e+   +++      i W    ksf+v ++e f + v++            +   +nf s  r
    CCD23018.1 1354 FLNKLFTSNEEytmDDIltffnsIFWC--MKSFHV-ENEVFRTVVITllnyvdaicfnDLIMKRNFLSWKR 1421
                    777777777655553443333336663..457888.66778777766554444444434444445555555 PP

>> T6PP_N  Trehalose-6-phosphate phosphatase N-terminal helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.2   2.5e+03      42      75 ..     870     903 ..     858     906 .. 0.74
   2 ?   -3.4  17.4       4.5     9e+03      15      84 ..     924     989 ..     920    1095 .. 0.84
   3 ?    3.8   0.0     0.025        50       3      32 ..    1170    1199 ..    1169    1207 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.2
      T6PP_N  42 esLeadcetgtevlelrtteeekvrldikdEiee 75 
                 + ++ + +++ + +e++t++e ++ + i+  i+ 
  CCD23018.1 870 KRIQIQVRKELQLREMQTKHELDAAITIQSKIRS 903
                 4445566788889999999999999999988876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.5
      T6PP_N  15 vRrqIvervLkgieirehfvesLknakesLeadcetgtevlelrtteeekvrldikdEieeLekDlkFLe 84 
                 +Rr+I++r Lk+ + +++ v  Lk++ ++Le++  + t+ l ++ +e+++++      +eeL+k ++  +
  CCD23018.1 924 IRRRIARRTLKQLKSDAKSVSHLKEVSYKLENKVIELTQNLAMKVKENKTLS----ASLEELQKKVALTN 989
                 7******************************888899999999999444433....33444444444333 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.025
      T6PP_N    3 eeFyelmyrtrevRrqIvervLkgieireh 32  
                  ee+y+l+++t  +  +I+e +Lkg ++ ++
  CCD23018.1 1170 EELYRLLEETDVLNNEITEGLLKGFQVPDA 1199
                  79***********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2377  (0.132579); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.27u 0.38s 00:00:01.65 Elapsed: 00:00:00.54
# Mc/sec: 8746.08
//
Query:       CCD23019.1  [L=113]
Description: hypothetical protein NDAI_0A08660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-31  107.6   1.7    2.3e-31  107.4   1.7    1.0  1  Synaptobrevin  Synaptobrevin
  ------ inclusion threshold ------
       0.26   11.4   1.5       0.37   10.9   1.5    1.2  1  UPF0258        Uncharacterised protein family (UPF0258)


Domain annotation for each model (and alignments):
>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   1.7   2.5e-35   2.3e-31       2      88 ..      23     109 ..      22     110 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 2.5e-35
                    XXHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   2 ndklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlililiiiivic 88 
                    ++k a++kae+d++++im++Ni+kv erge+l +++dk++nL+ saq Fk+ a++++++mwwk++k++++l+lv++il+++ii++i+
     CCD23019.1  23 QSKAAALKAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKQMWWKDLKMRMCLVLVIIILLVVIIVPIV 109
                    78999*******************************************************************************986 PP

>> UPF0258  Uncharacterised protein family (UPF0258)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.5   4.1e-05      0.37     128     151 ..      87     110 ..      70     111 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.1e-05
     UPF0258 128 ckivllivllicivvvviivpivv 151
                  k+ + +vl+i+i++vviivpivv
  CCD23019.1  87 LKMRMCLVLVIIILLVVIIVPIVV 110
                 4677889999999*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1223  (0.0682135); expected 358.6 (0.02)
Passed bias filter:                      741  (0.0413297); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 847.29
//
Query:       CCD23020.1  [L=824]
Description: hypothetical protein NDAI_0A08670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.14   12.5   0.4        1.2    9.5   0.1    2.6  2  Glu-tRNAGln  Glu-tRNAGln amidotransferase C subunit


Domain annotation for each model (and alignments):
>> Glu-tRNAGln  Glu-tRNAGln amidotransferase C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.14   2.4e+03      37      54 ..     188     221 ..     163     225 .. 0.61
   2 ?    9.5   0.1   6.6e-05       1.2       4      27 ..     343     366 ..     341     383 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.14
                  ..............-EB.-S..--HHHHHTT-SS CS
  Glu-tRNAGln  37 p.............vlR.eD..evreelLknApe 54 
                                  R eD  e+ ee+ +nAp+
   CCD23020.1 188 MimekapiprprpiLARnEDgqEIYEEVEENAPD 221
                  4555555555555533436753348999999998 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 6.6e-05
                  HHHHHHHHHHHHHHHHHTTCGCS- CS
  Glu-tRNAGln   4 eEleklakelnsildyveqLqevd 27 
                  eE+++++k++++ l +++++  vd
   CCD23020.1 343 EEEKEVLKDMQDSLSHFKKITTVD 366
                  899********************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (824 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2669  (0.148865); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.17u 0.34s 00:00:01.51 Elapsed: 00:00:00.48
# Mc/sec: 5151.39
//
Query:       CCD23021.1  [L=289]
Description: hypothetical protein NDAI_0A08680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-11   43.3  10.9    2.9e-11   43.3  10.9    2.2  3  bZIP_2    Basic region leucine zipper
    4.4e-09   36.3  10.8    4.4e-09   36.3  10.8    2.3  3  bZIP_1    bZIP transcription factor
     0.0024   18.4   7.4     0.0024   18.4   7.4    2.3  3  bZIP_Maf  bZIP Maf transcription factor


Domain annotation for each model (and alignments):
>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.2   7.1e+03      44      53 ..       4      13 ..       3      18 .. 0.62
   2 ?   -5.4   1.8         3   1.8e+04      24      31 ..      41      48 ..      40      51 .. 0.45
   3 !   43.3  10.9   4.8e-15   2.9e-11       7      52 ..     236     281 ..     230     282 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.2
                HHHHHHHHHH CS
      bZIP_2 44 LrqkveqLek 53
                L+qk+ qL+k
  CCD23021.1  4 LFQKQLQLTK 13
                5566666654 PP

  == domain 2  score: -5.4 bits;  conditional E-value: 3
                HHHHHHHH CS
      bZIP_2 24 kakeeele 31
                k++eee +
  CCD23021.1 41 KEEEEEEQ 48
                44444444 PP

  == domain 3  score: 43.3 bits;  conditional E-value: 4.8e-15
                 XXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   7 erRrkNreAarrsRekkkakeeeleervkeLeeeNaqLrqkveqLe 52 
                  +R +N+eAarrsR +k +++++lee+v+eL ++N+ L+++v+ L+
  CCD23021.1 236 LKRARNTEAARRSRARKLQRMNQLEEKVEELLSRNSDLENEVQRLR 281
                 6999***************************************997 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.7     1e+04      37      42 ..      10      15 ..       5      25 .. 0.54
   2 ?   -3.5   1.2       1.9   1.2e+04      40      55 ..     181     196 ..     175     199 .. 0.58
   3 !   36.3  10.8   7.4e-13   4.4e-09       9      55 ..     237     283 ..     234     288 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.7
                HHHHHH CS
      bZIP_1 37 aLekeN 42
                +L+k+N
  CCD23021.1 10 QLTKKN 15
                233333 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHHHH CS
      bZIP_1  40 keNksLkseleelkke 55 
                 + N ++k++ +  kk+
  CCD23021.1 181 NNNNNMKKQGKVSKKN 196
                 4455566655555554 PP

  == domain 3  score: 36.3 bits;  conditional E-value: 7.4e-13
                 XX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   9 rkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkke 55 
                 ++++N eaArrsR RK +++++Le++v++L + N++L +e+++l++ 
  CCD23021.1 237 KRARNTEAARRSRARKLQRMNQLEEKVEELLSRNSDLENEVQRLRNL 283
                 899*****************************************986 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.6   9.4e+03      57      62 ..      45      50 ..      37      66 .. 0.53
   2 ?   -3.8   0.2         3   1.8e+04      68      73 ..     184     189 ..     174     199 .. 0.42
   3 !   18.4   7.4   3.9e-07    0.0024      35      84 ..     238     287 ..     234     289 .] 0.94

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.6
    bZIP_Maf 57 ekekee 62
                e+e++e
  CCD23021.1 45 EEEQQE 50
                222222 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3
    bZIP_Maf  68 erlqqe 73 
                 ++++++
  CCD23021.1 184 NNMKKQ 189
                 222222 PP

  == domain 3  score: 18.4 bits;  conditional E-value: 3.9e-07
    bZIP_Maf  35 rlKNrgyakscrkrrlqqkeelekekeeleeelerlqqelsrlrqekdal 84 
                 r +N  +a+++r r+lq+ ++le++ eel  +++ l++e++rlr+ +da+
  CCD23021.1 238 RARNTEAARRSRARKLQRMNQLEEKVEELLSRNSDLENEVQRLRNLLDAQ 287
                 789*****************************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1789  (0.0997825); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2139.05
//
Query:       CCD23022.1  [L=99]
Description: hypothetical protein NDAI_0A08690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-36  124.9   0.5    1.4e-36  124.7   0.5    1.0  1  Urm1      Urm1 (Ubiquitin related modifier)
    0.00036   21.1   0.1    0.00047   20.8   0.1    1.2  1  ThiS      ThiS family


Domain annotation for each model (and alignments):
>> Urm1  Urm1 (Ubiquitin related modifier)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.7   0.5   1.6e-40   1.4e-36       1      96 []       3      99 .]       3      99 .] 0.97

  Alignments for each domain:
  == domain 1  score: 124.7 bits;  conditional E-value: 1.6e-40
                EEEEEEETTCGGGCTT-SEEEEEE-SSSSS-BHHHHHHHHCCCC-SSGH..HHCBSTTSB-TTEEEEETTCEHHHCTCCCSB--TTEEEEEEETTT-- CS
        Urm1  1 kveleflgGlelllekkkkhkveleieseevnleeliayikknlikerk..evFlekdkvrPGilvLindaDwellgekdyelkdkDkivFistlhGG 96
                kv++eflgGl+++++k++ hkve++ ++++v+l++l++yi +n+i +++   vF+e+d+vrPGi++Lind+Dwel+ge++yel+d+D i+F+stlhGG
  CCD23022.1  3 KVKVEFLGGLDVIFNKERVHKVEVP-QEDPVTLKDLLDYIIDNMIANKNdvPVFIENDTVRPGIITLINDTDWELEGELEYELQDGDIISFTSTLHGG 99
                69***********************.99*******************884568********************************************9 PP

>> ThiS  ThiS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   5.2e-08   0.00047      13      76 ..      23      98 ..      14      99 .] 0.81

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.2e-08
                CEEEEESSTSBHHHHHHHHHHHTCHHG...........TTTTEEEEETTEEEGC.CTTTSB--TTCEEEEEESTTC CS
        ThiS 13 eeelelaegstvaelleaLgerypela...........lerrvavavNgeivpr.lwldtelkdgDevailppVaG 76
                + e+  +++ t+++ll+ +  +  + +            +++++ ++N+++ +   +l++el+dgD +++     G
  CCD23022.1 23 KVEVPQEDPVTLKDLLDYIIDNMIANKndvpvfiendtVRPGIITLINDTDWELeGELEYELQDGDIISFTSTLHG 98
                345777899**********87775555889999*****99**************66************99665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 764.67
//
Query:       CCD23023.1  [L=207]
Description: hypothetical protein NDAI_0A08700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0016   18.0   0.7      0.021   14.4   0.2    2.0  2  DUF1281   Protein of unknown function (DUF1281)


Domain annotation for each model (and alignments):
>> DUF1281  Protein of unknown function (DUF1281)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   1.1e-06     0.021      21     111 ..      37     127 ..      26     140 .. 0.80
   2 !    2.1   0.0    0.0066   1.2e+02      51      95 ..     143     186 ..     135     195 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.1e-06
     DUF1281  21 GiLkPvktlsyapypaLvsaGtge..sspenlAFeqWlelLkedveLteeaieeierlyeqsglaavkWeslteakreala..allerksaDWlg 111
                  +Lk v t+s +py  L +a tg+   s +n+      ++L+e+ +L  e+ + i  + +++ l+++ We + + + ++l+  + + ++++D + 
  CCD23023.1  37 SLLKRVATQSNIPYDTLSKA-TGKrnNSEDNTT---TTDVLNEKEQLILENYKLIYMIEQEEYLKKKLWELIKNINDHILSvkNFIIQQKLDKIE 127
                 689**************998.555104555544...45899*******************************99998876422567777777655 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.0066
     DUF1281  51 AFeqWlelLkedveLteeaieeierlyeqsglaavkWeslteakr 95 
                  F + +++L++   +t+ +i  i + ++ ++ +++ W+ +++ ++
  CCD23023.1 143 NFFNNIQILENSNGITKGKIALIVNEFK-ENYKEIDWNLIPKDSK 186
                 5667789999999999999999999997.58999*****999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1467  (0.0818227); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1529.42
//
Query:       CCD23024.1  [L=410]
Description: hypothetical protein NDAI_0A08710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-74  250.5   0.3    1.9e-74  250.3   0.3    1.1  1  COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
    2.7e-28   98.1   0.1    6.1e-28   97.0   0.1    1.6  1  ERGIC_N          Endoplasmic Reticulum-Golgi Intermediate Com


Domain annotation for each model (and alignments):
>> COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.3   0.3   2.1e-78   1.9e-74       1     221 []     143     393 ..     143     393 .. 0.95

  Alignments for each domain:
  == domain 1  score: 250.3 bits;  conditional E-value: 2.1e-78
  COPIIcoated_ERV   1 CYgaeeee...........kCCntCedVreaYkkkgwafkdgeeieqCeregykeklkeqkkegCrikGklevnkvaGnfhiapgksfqeekrh 83 
                      CYg+ +++            CC+tCe+VreaY k+gwaf dg++ieqCeregy++k++++ +egCr+kG++ +n+++Gn+h+apgk+fq+ k h
       CCD23024.1 143 CYGSIDQSgndkiesvkdkICCQTCEQVREAYLKAGWAFFDGKNIEQCEREGYVTKINKHLNEGCRVKGNVLLNRIQGNIHFAPGKAFQNVKGH 236
                      88887777777888888889************************************************************************** PP

  COPIIcoated_ERV  84 vhdlssyeke.klnfsHtihkLsfgeelpgek........knPLdgtk..keeeekalmfqYflkvvptkyekldkkkietnqysvtehersle 166
                      +hd s ye++ +lnf+H+ih+Lsfg+++++ +        ++PLdg +   + +++ ++++Yf+k+vpt+ye+ldk   et q+s+t h+  ++
       CCD23024.1 237 FHDSSLYETSpDLNFNHIIHHLSFGKTIEQLAqlrgatvaTSPLDGQQisPSFDSHLYRYSYFVKIVPTRYEYLDKMISETAQFSATFHQSLVT 330
                      ********9459*************999988899*****99*******9977899*******************998889************** PP

  COPIIcoated_ERV 167 ggkde.......sekglPGvffsYeisPlkvivkeerk.sflhfltslcaiiGGvltvasliD 221
                      g++d        s++glPG+f+++e+sPlk+i++e++  s+++++++++++iGG+l+v++++D
       CCD23024.1 331 GERDPenpnikySRTGLPGLFIYFEMSPLKIINTEQHFkSWSGVFLHCITSIGGILAVGTILD 393
                      *99889******9************************99**********************98 PP

>> ERGIC_N  Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.1   6.8e-32   6.1e-28       2      90 ..       9      97 ..       8      98 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 6.8e-32
                XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX-EEEEEE--S--SEEEEEEEEEE.SS-GGGEEEEEEETTECEE CS
     ERGIC_N  2 rrfDafpKvpedltqktlsGgiislvcillilfLllselteylttevkeelvvdksrsekleinlditfpalpCellsldvqDesgehe 90
                 ++Daf+K++ed++ +t++G+iis+ cil++++Lll+e+ +y +  ++++lvvd++r+ kl++nldi+fp++pC++l+ld++D++g+ +
  CCD23024.1  9 LSLDAFSKTQEDVRIRTKTGAIISISCILVTVLLLLNEWIQYSQIVTRPTLVVDRERNLKLDLNLDISFPSMPCDILNLDILDDAGDLQ 97
                589**********99***********************************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3107.51
//
Query:       CCD23025.1  [L=202]
Description: hypothetical protein NDAI_0A08720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-22   77.5   0.2    1.6e-21   76.4   0.2    1.5  1  PX        PX domain


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.2   8.7e-26   1.6e-21      15     112 ..      90     197 ..      79     198 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 8.7e-26
                 TTSSEEEEEEEEEETTS.....SSEEEEEEEHHHHHHHHHHHHHHHT......TSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHH CS
          PX  15 gskkhsyylyevelktg.....akewtvkRrYsdFeeLhskLlrkfp......rvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrn 102
                 +++++ ++ ye+ ++t+     +++++v+RrYsdFe +++ L ++        r+++P+lP+kv f++  ++++++ie+rr+gL+++++ ++ hp l++
  CCD23025.1  90 NGERNMFTDYEIFCHTNlpnfkKRSSKVRRRYSDFEFFKKCLIKEITmlhnhpRIMVPHLPGKVFFSN--RFNDDVIEERRQGLNKWMKTVAGHPLLQS 186
                 678999*************************************9999999999*************98..***************************** PP

                 .SHHHHHHHHS CS
          PX 103 .sevlteFLev 112
                  s+vl +F++ 
  CCD23025.1 187 gSQVLVRFIQD 197
                 ********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       768  (0.0428356); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1528.18
//
Query:       CCD23026.1  [L=212]
Description: hypothetical protein NDAI_0A08730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-23   82.8   0.0    4.6e-23   82.0   0.0    1.4  1  Histone        Core histone H2A/H2B/H3/H4
    8.3e-19   67.6   1.1    1.6e-18   66.8   1.1    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    0.00047   20.2   0.1     0.0013   18.8   0.1    1.8  2  TAFII28        hTAFII28-like protein conserved region


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   7.7e-27   4.6e-23      18     130 ..      81     194 ..      73     195 .. 0.94

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 7.7e-27
                 XXXXXXXXHT..TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
     Histone  18 ekkvsakker..kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakha 114
                 e++v+++     ++++k+++ +++++  ++++ +++  +  + d+++ +lpfaR +r+++k+++e  +isae + ++++a+E +++el+++A+++a+++
  CCD23026.1  81 EYDVFRNVGLglTGHYKEIMIQYWQELINEIEATNEPGSKFQDDFKSSSLPFAR-IRKVMKTDEEVRMISAEVPIIFAKACEVFITELTMRAWCVAENN 178
                 56677777777899****************************************.******************************************** PP

                 TXSEEXHHHHHHHHHH CS
     Histone 115 KRvTitpkDiqlArrl 130
                 +R+T+++ Di  A+++
  CCD23026.1 179 RRRTLQKADIAEALKK 194
                 *************986 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   1.1   2.6e-22   1.6e-18       2      65 .]     129     192 ..     128     192 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 2.6e-22
                    XXXHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                    +LP ar++k+mk d+++r+i+ ++++++a+++e fi+el+ +A+ +++ ++r+t+++++i+ A+
     CCD23026.1 129 SLPFARIRKVMKTDEEVRMISAEVPIIFAKACEVFITELTMRAWCVAENNRRRTLQKADIAEAL 192
                    79**********************************************************9996 PP

>> TAFII28  hTAFII28-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         1     6e+03      12      22 ..      80      90 ..      76     109 .. 0.75
   2 !   18.8   0.1   2.2e-07    0.0013      17      85 ..     125     193 ..     114     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1
     TAFII28 12 nRYevfrrskl 22
                + Y+vfr+  l
  CCD23026.1 80 DEYDVFRNVGL 90
                67999998766 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 2.2e-07
     TAFII28  17 frrsklnkaavkklvnsvl.sqsvsqnvaivvaglaKvFvgeiveeArevqeeweesgplqpehlreayr 85 
                 f++s+l+ a ++k++++      +s++v i+ a  + vF+ e+  +A  v e++   + lq++++ ea +
  CCD23026.1 125 FKSSSLPFARIRKVMKTDEeVRMISAEVPIIFAKACEVFITELTMRAWCVAENN-RRRTLQKADIAEALK 193
                 99*************988845569**************************9885.6779**999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1032  (0.0575604); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1570.83
//
Query:       CCD23027.1  [L=723]
Description: hypothetical protein NDAI_0A08740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-06   28.0   0.0    4.2e-06   26.8   0.0    1.6  1  SAM_2          SAM domain (Sterile alpha motif)
    0.00072   19.9   0.1     0.0017   18.7   0.1    1.5  1  SAM_1          SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   4.7e-10   4.2e-06       8      64 ..     654     707 ..     649     709 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 4.7e-10
                 HHHHHHHHTTTGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHHHH CS
       SAM_2   8 dvaeWLrsiglkqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkkiqe 64 
                 +v  WL+s++l++y d+++++ +     l  l+ ++L+  G++++g r+k+lk++  
  CCD23027.1 654 NVPLWLKSLRLHKYSDILEKYSWLE---LIDLDDSTLENNGVSALGARRKLLKAFGI 707
                 7889****************99999...88***********************9975 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   1.9e-07    0.0017       8      59 ..     655     704 ..     653     705 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.9e-07
                 HHHHHHHTTSGGGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHHH CS
       SAM_1   8 VgeWLesiglgqYadlFrageidgdaLlllteddLeklgvtllGHrkkIlya 59 
                 V  WL+s++l++Y d +  ++ ++  L +l++++Le+ gv+ lG r+k+l+a
  CCD23027.1 655 VPLWLKSLRLHKYSDIL--EKYSWLELIDLDDSTLENNGVSALGARRKLLKA 704
                 889**************..6669**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2057  (0.11473); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.48
# Mc/sec: 4565.53
//
Query:       CCD23028.1  [L=579]
Description: hypothetical protein NDAI_0A08750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-49  169.2   6.4    2.9e-49  167.9   6.4    1.7  1  PDEase_I     3'5'-cyclic nucleotide phosphodiesterase
     0.0092   16.2   0.0      0.021   15.0   0.0    1.7  1  HD           HD domain
  ------ inclusion threshold ------
      0.032   13.9   0.1       0.14   11.8   0.0    2.2  2  ATP-grasp_6  ATP-grasp-like domain


Domain annotation for each model (and alignments):
>> PDEase_I  3'5'-cyclic nucleotide phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.9   6.4   4.9e-53   2.9e-49       1     238 []     293     565 ..     293     565 .. 0.90

  Alignments for each domain:
  == domain 1  score: 167.9 bits;  conditional E-value: 4.9e-53
                 SSSHHHHHHHHHHHHHHHHCCHCCCCS-HHHHHHHHHHHHHTTTT--S--HHHHHHCT-HHHHHCCCSSHHHHHHHHHHHHHHTSGGG-TTTTS-HHHH CS
    PDEase_I   1 YHNfrHAadVlqalfyllkkeklkeeltpleilalliaalcHDvdHpGtnNsFlvnskselailYndesvLEnhHlalafqllkkeecnifknlskeey 99 
                 +HNfrHA+dV+q+++ l+ + kl    +++ il l +aa++HD++HpGtnN+   + +  l i++n+ svLE++H +++ +l+ ++ +n++k       
  CCD23028.1 293 FHNFRHAIDVMQSTWQLCVNLKLT---NKVHILLLTMAAIGHDIGHPGTNNQLFKKFNCLLGIKFNNVSVLERFHKQVFQNLIWNQWSNLMKAS----- 383
                 9*********************99...89******************************************************98855555544..... PP

                 HHHHHHHHHHHHTTSGGGHHHHHHHHHHHCCTTS-TTTCT.......-HHHHH....HHHHHHHHHHHTGCCCS-HHHHHHHHHHHHHHHHHHHHHHH. CS
    PDEase_I 100 kelrkliielIlaTdmakhfelleklkelvkkkeknslnke......eeedkk....lllsllikaaDisnptkpweiskkwaelvleEffeqgdeek. 187
                  + ++li+e+IlaTdma+h ++++kl+e++ + +kn l+++      +    +     l+s++ikaaDisn+t+++ +s+kwa l++ Ef +   +ek 
  CCD23028.1 384 VNNMNLINEAILATDMAFHSTYVAKLDEIICH-RKNILENPgkqdslK----DvefgSLISFIIKAADISNVTRSLIVSAKWAFLITLEFKDSCSLEKy 477
                 56679*********************998885.466666664433332....14444678**************************************7 PP

                 HCT----..GGGTSSC......................................HHHHHHHHHHTHHHHHHHHHHC-GGGHHHHHHHH CS
    PDEase_I 188 elglpvs..plmdrek.tsl..................................aksqigFidfvvkplfealakllpelkelldele 238
                  ++ ++s   l+d    ++l                                  +  qi Fi+ +++ +f++lak++pel+ l d+++
  CCD23028.1 478 HEDYEIStqTLCDDAVkDKLeikysdvnyvekifnilnskcittddltkkypaiPGGQIFFINTFAEEFFTKLAKVFPELQFLSDNVQ 565
                 7788888889999987555699***************************999888****************************99985 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.6e-06     0.021       2      51 ..     296     344 ..     295     397 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.6e-06
                 HHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHTTTTHHHHTS..HHHHH CS
          HD   2 leHsleVaklarrlaedlge..eedrellllaaLlHDiGkgpfgdafekkee 51 
                 + H + V++ + +l+  l++       ll +aa+ HDiG++ ++  ++  ++
  CCD23028.1 296 FRHAIDVMQSTWQLCVNLKLtnKVHILLLTMAAIGHDIGHPGTNN-QL--FK 344
                 6788888888888999888888899*****************985.33..33 PP

>> ATP-grasp_6  ATP-grasp-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       2.3   1.3e+04      22      35 ..     131     144 ..     127     145 .. 0.79
   2 ?   11.8   0.0   2.3e-05      0.14       1      23 [.     479     501 ..     479     506 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2.3
  ATP-grasp_6  22 eilDrednfikLkk 35 
                  ei+  +d +++L++
   CCD23028.1 131 EIIISQDRILRLNH 144
                  77778999999986 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.3e-05
  ATP-grasp_6   1 EdlELSTqillkeAikrGikvei 23 
                  Ed E+STq l+ +A+k  ++++ 
   CCD23028.1 479 EDYEISTQTLCDDAVKDKLEIKY 501
                  99*************99888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4051.61
//
Query:       CCD23029.1  [L=734]
Description: hypothetical protein NDAI_0A08760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.4e-24   85.4   3.0    1.5e-21   77.1   0.4    3.7  2  eIF2A          Eukaryotic translation initiation factor eIF2A
    4.2e-09   36.1   0.1    9.6e-09   34.9   0.1    1.6  1  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN
  ------ inclusion threshold ------
      0.057   13.6   0.1       0.18   12.0   0.1    1.8  1  Spindle_Spc25  Chromosome segregation protein Spc25
       0.19   12.7   0.8        8.2    7.5   0.1    3.7  4  WD40           WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.1    0.0046        21      95     166 ..     187     254 ..     162     263 .. 0.83
   2 !   77.1   0.4   3.5e-25   1.5e-21       2     188 ..     399     621 ..     398     627 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0046
                 EEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT CS
       eIF2A  95 iskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvewspdgryvlTattapr 166
                 + + ++ + N + fspkg+++     + +      w   +++ + ++ ++n  +   sp+ +y++T++++p 
  CCD23029.1 187 VETRNNWSTNYVRFSPKGTYLFSYHVQGV----TAWGGPHFDRLRRFYHPNVRTSSVSPNEKYLVTFSSTPI 254
                 55556677899999999999988766554....78999999999***********************99985 PP

  == domain 2  score: 77.1 bits;  conditional E-value: 3.5e-25
                 EESSECEEEEEE-TTTTEEEEEEE.E--TT-CEEEEEEEEEESSSTT--EEECCEESSS.EEEEEE-TTSS-EEEEE....S....SSSC.EEEEEECS CS
       eIF2A   2 sffkadkvklkWnkkGtsllvlvstevdktnksyygetelyliklkkkksevvelkkegpihdvaWspkskefaviy....G....kmpa.kvslfdlk 91 
                 ++ ++++v+l+W+ +++ l++ v+ +++k++k   ++ e+ ++++k++++e +el  +  ++ ++W+pk+++f+ i     G     +p+  + ++  +
  CCD23029.1 399 NLVQVSNVTLHWQDESKFLCFNVE-RHTKSGKTQFSNLEICRLTEKDIPVE-IEL--KDCVIGFEWEPKGNRFVTISvkdtGddniAIPNnIIGFYAPE 493
                 57899*******************.88****************88877764.456..4459*************9963333566555666578899874 PP

                 .............CEEEEEEEEES--EEEE-TTSSEEEEE-TT..SSS.-EEEEEETT...............TTEEEEEEE-TT--EEEE-TTSSEEE CS
       eIF2A  92 .............vkviskleeqkrNtiffspkgklvllaGfg..nla.Geleiwdvk...............kkkkiakaeaanatlvewspdgryvl 159
                               k+++++ ++  Nti +sp g++v++a +   n++  +le++d +               ++k +a+  ++  t++ w+p+gr+++
  CCD23029.1 494 qnvskknadtikrWKLVKDIPNKFSNTISWSPAGRFVVVATLVkpNVRkSSLEFFDLDypgeknindaddvnaSLKDVATPTNTSVTDLTWDPSGRFIT 592
                 456667788888899*************************99623443477888876544211111111222334566666677778899********* PP

                 EEE-TTT-SSS-EEEEEETTTEEEEEEE- CS
       eIF2A 160 TattaprlrvdngfkiwsysGklvykkef 188
                   +++ ++++dngfk++++ G+l++    
  CCD23029.1 593 AWSSSLKHKIDNGFKMYNIAGNLIKDDLL 621
                 ***********************987665 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.1   2.1e-12   9.6e-09      12      65 ..      59     113 ..      56     116 .. 0.94

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2.1e-12
                 HHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEET CS
       RRM_1  12 eeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklg 65 
                 ++ L  lFsk G++++ + + d et+k+kgf fVe  s +dA+k+l+++ngk l+
  CCD23029.1  59 QKALTGLFSKAGKVVNMEFPIDsETKKTKGFLFVECGSVDDAKKILKSFNGKRLD 113
                 567889**********************************************986 PP

>> Spindle_Spc25  Chromosome segregation protein Spc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     4e-05      0.18      13      55 ..      20      62 ..      17      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4e-05
  Spindle_Spc25 13 nidpkdperefsftLdvsedtyevlecsPkLedeeleelleeL 55
                    id +d e+e+sf+ d++ d+y v++  P +++++++ l++ L
     CCD23029.1 20 DIDFSDLEKEYSFDDDFNFDQYVVVNGAPVIPESKVPVLQKAL 62
                   68999********************************999987 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.84   3.8e+03      16      27 ..     198     209 ..     171     220 .. 0.82
   2 ?   -3.0   0.0       3.7   1.7e+04      17      27 ..     238     248 ..     228     251 .. 0.73
   3 ?    0.0   0.0      0.42   1.9e+03      15      28 ..     520     533 ..     514     541 .. 0.78
   4 ?    7.5   0.1    0.0018       8.2      11      29 ..     577     597 ..     568     610 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.84
                 EEEETTSSEEEE CS
        WD40  16 lafspdgawlas 27 
                 ++fsp g++l+s
  CCD23029.1 198 VRFSPKGTYLFS 209
                 569999999986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.7
                 EEETTSSEEEE CS
        WD40  17 afspdgawlas 27 
                 ++sp+ ++l++
  CCD23029.1 238 SVSPNEKYLVT 248
                 46999999986 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.42
                 EEEEETTSSEEEEE CS
        WD40  15 slafspdgawlasG 28 
                  +++sp g++++ +
  CCD23029.1 520 TISWSPAGRFVVVA 533
                 689*******9865 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0018
                 SSEEEEEEETTSSEEE..EEE CS
        WD40  11 ssvtslafspdgawla..sGs 29 
                 +svt+l ++p+g++++  s+s
  CCD23029.1 577 TSVTDLTWDPSGRFITawSSS 597
                 47************9634445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5069.42
//
Query:       CCD23030.1  [L=292]
Description: hypothetical protein NDAI_0A08770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-50  170.3   0.0    4.7e-50  169.7   0.0    1.3  1  Proteasome      Proteasome subunit
    4.6e-11   42.2   1.0    6.9e-11   41.6   0.0    1.9  2  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.7   0.0   5.3e-54   4.7e-50       1     189 [.      31     218 ..      31     219 .. 0.96

  Alignments for each domain:
  == domain 1  score: 169.7 bits;  conditional E-value: 5.3e-54
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 v++G t++Gik+kdgvv+a++k +t  skll +++  Ki  +d+hig++++Gl++D+r lv+r r+ea++++  y+ pip++  ++r+ +++qa+t+++
  CCD23030.1  31 VENGATSIGIKCKDGVVFAVEKIIT--SKLLVPKKNVKIQGVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKMYDLPIPISAFAERLGQYVQAHTLYN 127
                 689**********************..***9******************************************************************** PP

                 TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH...STTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEE CS
  Proteasome 100 grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekey...kedltleeavelavkalkealerdklsgknievav 189
                 ++rpfgv  +++g+de+g p+Ly+++psG+++++ + +a+G+g++ ak+ lek+     + lt  +av+ a k+++ a+e+ k +  ++e+ +
  CCD23030.1 128 SVRPFGVTSIFGGIDEKG-PHLYMLEPSGTCWGY-NGAATGKGRQTAKAELEKLAdqhPDGLTTRDAVKYAAKIIYMAHEDNKEKDFELEISW 218
                 ***************998.***************.7*******************995666*******************8888877777765 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   7.7e-15   6.9e-11       1      23 []       8      30 ..       8      30 .. 0.97
   2 ?   -3.3   0.3      0.88   7.9e+03      10      13 ..      83      86 ..      83      86 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 7.7e-15
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YD+s ++FSPdGR fQVEYA kA
      CCD23030.1  8 YDLSNSVFSPDGRNFQVEYAGKA 30
                    ********************887 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.88
  Proteasome_A_N 10 PdGR 13
                    PdGR
      CCD23030.1 83 PDGR 86
                    9**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2166.61
//
Query:       CCD23031.1  [L=249]
Description: hypothetical protein NDAI_0A08780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-35  122.7   0.0    1.8e-35  122.5   0.0    1.0  1  DLH          Dienelactone hydrolase family
  ------ inclusion threshold ------
       0.12   11.6   0.0        4.8    6.4   0.0    2.2  2  Hydrolase_4  Serine aminopeptidase, S33
       0.14   12.1   0.0         41    4.2   0.0    3.1  2  DUF2766      Protein of unknown function (DUF2766)


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.5   0.0     3e-39   1.8e-35       2     216 ..      31     244 ..      30     245 .. 0.94

  Alignments for each domain:
  == domain 1  score: 122.5 bits;  conditional E-value: 3e-39
         DLH   2 daylatpknakkpvvvviqeifGvn.dnikdiserlaeeGYvalaPdlYarqaldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkk 99 
                 ++y+ + +++  +v+v++++++G++  n+  i+++la +G+ + +Pd+++++   + d   +++ +  ++++ ++ k++d++   +  l+  +e+++k 
  CCD23031.1  31 ETYITGTTSPSDKVIVIMTDVYGNHfTNVLLIADQLALAGFKVYIPDILFGDIVSSMDGSVDFNGWLAKHDPITTRKIVDNF---LSNLR--KEFNPKF 124
                 688999999999*****************************************999999***********************...33333..33469** PP

         DLH 100 vgvvGfCmGGalalllaaev.pevdaavafYGlspekeleeaakikapilalfgeeDefipadevekleealkaanvdlelkvYpgagHaFandsre.. 195
                 vg+vG+C+G+++a++ ++ev   +d +++ +++ ++ +  +    ++p+l+ ++e D+++pa+ ++++e +lk+ ++ +++++++g+ H+Fa + ++  
  CCD23031.1 125 VGIVGYCFGAKFAVQQISEVdGLADICAIAHPSGVSIDELKLIGKNKPLLIAAAETDPIFPAELRHQTEDTLKEIGARYQIDLFSGVSHGFASRGDAsd 223
                 ********************8899*********************************************************************998877 PP

         DLH 196 syneeaaedawervlelfkqv 216
                    ++a  +a ++++ +fk++
  CCD23031.1 224 PVIKYAMDKALHDQIFWFKHF 244
                 899****************97 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0008       4.8       5      38 ..      44      77 ..      40      79 .. 0.86
   2 ?    3.0   0.0    0.0089        53     192     233 ..     171     214 ..     161     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0008
  Hydrolase_4  5 avvvlvHGlaehsgryaelaeaLaaqGfavyalD 38
                  +v++   +++h   +  +a++La +Gf+vy+ D
   CCD23031.1 44 VIVIMTDVYGNHFTNVLLIADQLALAGFKVYIPD 77
                 56677777999********************998 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0089
  Hydrolase_4 192 lPllllhGeaDkvvdpeas...relyerlgskdktlklypglyHe 233
                   Pll+  +e D++ + e +   +++++++g+ + ++ l+ g  H 
   CCD23031.1 171 KPLLIAAAETDPIFPAELRhqtEDTLKEIGA-RYQIDLFSGVSHG 214
                  69*************9988555667777775.8888888888885 PP

>> DUF2766  Protein of unknown function (DUF2766)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0068        41      46      65 ..      89     108 ..      76     118 .. 0.86
   2 ?    3.5   0.0     0.012        69      49      69 ..     214     234 ..     179     241 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0068
     DUF2766  46 ksidfskhPaaadpvtkrai 65 
                  s+df+   a  dp+t r i
  CCD23031.1  89 GSVDFNGWLAKHDPITTRKI 108
                 589**99**********988 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.012
     DUF2766  49 dfskhPaaadpvtkraiekai 69 
                  f+ +  a dpv k a++ka+
  CCD23031.1 214 GFASRGDASDPVIKYAMDKAL 234
                 366666778888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1763.27
//
Query:       CCD23032.1  [L=1059]
Description: hypothetical protein NDAI_0A08790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-11   41.7   9.7    1.7e-10   40.9   9.7    1.4  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   9.7   9.3e-15   1.7e-10       2      39 ..      52      88 ..      51      89 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 9.3e-15
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39
                +C++Crk K+KCd++kP+Cs+C k + +C  y+  +++
  CCD23032.1 52 VCQECRKSKTKCDKEKPSCSRCLKIGITCI-YDVAKQE 88
                7*****************************.*999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1059 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1660  (0.0925874); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 6999.36
//
Query:       CCD23033.1  [L=210]
Description: hypothetical protein NDAI_0A08810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-14   54.1   0.0      2e-14   53.7   0.0    1.2  1  CH        Calponin homology (CH) domain


Domain annotation for each model (and alignments):
>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   1.1e-18     2e-14       5     108 ..      30     146 ..      26     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 1.1e-18
                 HHHHHHHHHHHTTSTTSSTT......SCHHHHHTTSHHHHHHHHHH.......STTTSSGGGSTTT......HHHHHHHHHHHHHHHHHHTTCHTTSS. CS
          CH   5 kellrWinshleeagpkvkv......edfeedlrDGvlLckLlnkl.......apglvdkkklnks......efkkleNinlaldvaekklgvpkvli. 83 
                 ke+ +Wi + + ++   +        +d+ ++l+DG++Lc+++n l       +      +  + +      +f ++e+i+++l++a+ ++gvp+ ++ 
  CCD23033.1  30 KEIENWIYEIILKEPLPS-SnnedgeSDLLDKLKDGTVLCRVANVLykadsndH------DDCHIKwriskmPFVQMEQISQFLSFAR-QYGVPEDELf 120
                 566677766654443322.23567779*******************85554442......333333556666****************.********** PP

                 -HHHHHTTSHH.HHHHHHHHHHHHHH CS
          CH  84 eaedlvegknk.svltllaqLfrafq 108
                 +++dl+e+k+  sv ++l ++ r+++
  CCD23033.1 121 QTVDLFEKKDPaSVYQTLKSITRYAN 146
                 *******88877*********99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1596.35
//
Query:       CCD23034.1  [L=192]
Description: hypothetical protein NDAI_0A08820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-27   94.5   4.9    4.7e-27   94.2   4.4    1.4  1  Peroxin-22      Peroxisomal biogenesis protein family
  ------ inclusion threshold ------
      0.018   14.7   0.1      0.021   14.5   0.1    1.1  1  SARAF           SOCE-associated regulatory factor of calcium 
       0.02   15.0   1.0       0.02   15.0   1.0    2.4  3  DUF370          Domain of unknown function (DUF370)
      0.029   14.6   0.8      0.056   13.6   0.8    1.5  1  Holin_SPP1      SPP1 phage holin
      0.061   13.7   0.0       0.12   12.8   0.0    1.5  1  G0-G1_switch_2  G0/G1 switch protein 2


Domain annotation for each model (and alignments):
>> Peroxin-22  Peroxisomal biogenesis protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   4.4   1.3e-30   4.7e-27       4     112 ..      73     177 ..      57     178 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 1.3e-30
  Peroxin-22   4 eskkvskksktiilshsilddsqidlsellsedvvlillPkvprddl..eeevsskneyKiilcdssdglsavvkqLkpsslivdedeleseeektefv 100
                 ++++++k sk+ii++++i + +++++++ll++dvvl+l P++++ +   e++v+++n  K+i+c++  g++a+vk+L++++li++ ++le++      +
  CCD23034.1  73 IDTDNKKPSKCIIVTEQINNITNVNWEKLLKKDVVLLLSPDISKIHElnEDNVEKANLSKVIHCETGLGMWACVKSLRKDQLICMPSDLEDG------I 165
                 5678899****************************************9999*****************************************......* PP

  Peroxin-22 101 kedLkrFvkeii 112
                 ++d+k+Fvk+ii
  CCD23034.1 166 PDDIKHFVKQII 177
                 ***********8 PP

>> SARAF  SOCE-associated regulatory factor of calcium homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   5.8e-06     0.021     147     219 ..      10      81 ..       1     108 [. 0.65

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.8e-06
       SARAF 147 kkeevkkksssssasllfvvlvllviayivykaflaaeeereaeaeggrrgeggggggggggpgseeeqddpP 219
                 +  ++++k  ++ +++ ++ +  +++++ +yk  +a+++++++ ++++++++++ +g+++++   ++++++p 
  CCD23034.1  10 TIGSNNNKMVRTLITGSVLAITTGLLCWAWYKNSVASTQNKDQDDNKQNNKKNKESGKEKNT-VIDTDNKKPS 81 
                 2333556666677777778888999**********999996665555555554444444443.4444445554 PP

>> DUF370  Domain of unknown function (DUF370)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.3   8.3e+03      35      51 ..       6      22 ..       3      26 .. 0.60
   2 ?   15.0   1.0   5.7e-06      0.02      23      56 ..      56      89 ..      49     104 .. 0.86
   3 ?   -0.4   0.0      0.36   1.3e+03      12      37 ..     103     128 ..      99     134 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.3
      DUF370 35 eegklidategrktksv 51
                +++++i   +++ +++ 
  CCD23034.1  6 KRNMTIGSNNNKMVRTL 22
                55666666666666665 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 5.7e-06
      DUF370 23 sapikrliqeakeegklidategrktksviitds 56
                +++ k+ +++ ke++++id ++++  k++i+t++
  CCD23034.1 56 KQNNKKNKESGKEKNTVIDTDNKKPSKCIIVTEQ 89
                67889999************************75 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.36
      DUF370  12 adriiaivspesapikrliqeakeeg 37 
                 +++++  +sp+ ++i +l +++ e+ 
  CCD23034.1 103 KKDVVLLLSPDISKIHELNEDNVEKA 128
                 67899999999999999998887765 PP

>> Holin_SPP1  SPP1 phage holin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   1.5e-05     0.056      36      69 ..      21      54 ..       8      61 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
  Holin_SPP1 36 alytaitlvftvataivawyKNnyvTkkakkqke 69
                +l t  +l++t+++  +awyKN     + k q++
  CCD23034.1 21 TLITGSVLAITTGLLCWAWYKNSVASTQNKDQDD 54
                56677789**************887777777776 PP

>> G0-G1_switch_2  G0/G1 switch protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.5e-05      0.12      14      90 ..       9      81 ..       6      93 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.5e-05
  G0-G1_switch_2 14 mlsqkpsrklvklYvlGsvLallGvviglvetvcspFssesrlreeeeavaklqaarekeaeekeeelvlekekake 90
                    m     ++k+v+  + GsvLa+    +gl+  +    s +s +++ +++ ++++++++++ + ++++++ +++k+ +
      CCD23034.1  9 MTIGSNNNKMVRTLITGSVLAI---TTGLLCWAWYKNSVASTQNKDQDDNKQNNKKNKESGK-EKNTVIDTDNKKPS 81
                    55566789*************7...5677766665555555443333333333333333333.33445555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2078  (0.115902); expected 358.6 (0.02)
Passed bias filter:                      751  (0.0418874); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1400.32
//
Query:       CCD23035.1  [L=431]
Description: hypothetical protein NDAI_0A08830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-67  225.3   0.5      1e-66  224.8   0.5    1.2  1  Rad1      Repair protein Rad1/Rec1/Rad17


Domain annotation for each model (and alignments):
>> Rad1  Repair protein Rad1/Rec1/Rad17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.8   0.5   5.8e-71     1e-66       1     274 [.      11     295 ..      11     296 .. 0.95

  Alignments for each domain:
  == domain 1  score: 224.8 bits;  conditional E-value: 5.8e-71
        Rad1   1 vfsAtlsnvseLatlLksiafkdk.......alvqissdGlkfivednrvlqaqafldkalFtsYtfenaqdd...........edeedeeedsvsfev 81 
                 +fsA++ ++++L+t+L++++++ k       +l+++++dGl+fi+e n+v+++q++l+k+lF sYt+ n + +           +  +  e+d+++ +v
  CCD23035.1  11 KFSASTVHLDHLTTALNCLVPFVKtgankddVLIYVDKDGLSFIRESNHVIRIQLYLSKELFLSYTYLNGSTTssaignndseeHRPDGGEDDHMEICV 109
                 59******************98866777888************************************77776689****9998655556689******* PP

        Rad1  82 sLsallecLnifgkndssskessssraskvasssakatscklsYkgeGsPLvliLeeagvtttcelsTyepe..edldleldrqevvlkvilkselLhs 178
                 +++++l+++n+ ++n ++                    +c+lsY+g+G+P+vli+e++ +++++e+sT  ++  ++ +l ld++++++++i+k+++L++
  CCD23035.1 110 KINHILDSINVANRNIDDII------------------ECTLSYNGDGYPFVLIFEDSFISEKVEYSTFIVKdmDNFGLILDKEHIIFECIIKGDVLYK 190
                 *****************997..................9********************************99999*********************** PP

        Rad1 179 alteLdat.skklkilassekk.apvfalsakgelgssevefpneksvlekfevs......sl.sessessYkfallkkaakalalssKvslrmdeaGl 268
                 al++L+++ +k+++i+a+++++ + +fa+ +k++lg s+v +pn++s+lek++++      ++ + + +  ++f++l+k++ +++++sKv+lrmd +Gl
  CCD23035.1 191 ALKDLKEVnCKECYIYAKTSENgNDTFAFISKSDLGYSKVRLPNSRSILEKLQIYendsttIChDVPAIGFFDFNSLDKIRISTKIASKVLLRMDIHGL 289
                 *******************877677**********************************996779999******************************* PP

        Rad1 269 Lslqfm 274
                 Ls++++
  CCD23035.1 290 LSVNIL 295
                 ****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3138.77
//
Query:       CCD23036.1  [L=143]
Description: hypothetical protein NDAI_0A08840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-23   82.0   0.2    2.4e-23   81.7   0.2    1.2  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil
  ------ inclusion threshold ------
      0.048   14.0   0.6        0.2   12.0   0.1    2.0  2  DUF1269         Protein of unknown function (DUF1269)
       0.38   10.8   2.0        2.7    8.1   0.0    2.3  2  GhoS            Endoribonuclease GhoS


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.2     4e-27   2.4e-23       2      94 ..      27     122 ..      26     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 4e-27
                     HHHHHHHHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHH..HTTEEEEEESCHHHHHHHTTSSSE.CSEEEEEESTTTHH CS
  Ribosomal_L7Ae   2 aieevlkkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealck..ekevpyvkvkskkeLGelvgkkrp.vsalaikdegdskd 93 
                     a++ vl++a+++++l++Gl+e+tkal rgea+lv+l ++v+++++ kl+e l++  e++vp++kv + k+LGe++g+ ++ ++++a+k++g+s +
      CCD23036.1  27 ALKVVLRTALVHDGLARGLRESTKALTRGEAQLVVLVSSVTEDNIIKLVEGLANdpENKVPLIKVADAKQLGEWAGLGKIdREGNARKVVGASVV 121
                     78899**************************************************************************************9976 PP

                     H CS
  Ribosomal_L7Ae  94 l 94 
                     +
      CCD23036.1 122 V 122
                     5 PP

>> DUF1269  Protein of unknown function (DUF1269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.17     1e+03      45      59 ..       8      22 ..       2      40 .. 0.49
   2 ?   12.0   0.1   3.3e-05       0.2      45      77 ..      45      77 ..      27      81 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.17
     DUF1269 45 lkelgeklkpgtsal 59
                ++e++e++ + t+ +
  CCD23036.1  8 VQEVQEEVVEQTAEV 22
                333333333333322 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.3e-05
     DUF1269 45 lkelgeklkpgtsalfllvekatvdkvlealak 77
                l+e  ++l++g++ l++lv+++t+d++++ +++
  CCD23036.1 45 LRESTKALTRGEAQLVVLVSSVTEDNIIKLVEG 77
                34556789*******************987765 PP

>> GhoS  Endoribonuclease GhoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.6     0.037   2.2e+02      63      85 ..       2      24 ..       1      29 [. 0.89
   2 ?    8.1   0.0   0.00044       2.7      55      86 ..      61      92 ..      31     100 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.037
                HHHHHHHHHGGGTSS----EEEE CS
        GhoS 63 eeieelaaglaesalgkkpevev 85
                +++ee ++   e+++++++ev++
  CCD23036.1  2 SDVEEVVQEVQEEVVEQTAEVTI 24
                6899999*************998 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00044
                EE---S-HHHHHHHHHHGGGTSS----EEEEE CS
        GhoS 55 glisalseeeieelaaglaesalgkkpevevl 86
                 l+s+ +e++i +l++gla++  +k p ++v+
  CCD23036.1 61 VLVSSVTEDNIIKLVEGLANDPENKVPLIKVA 92
                589******************99999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1042.42
//
Query:       CCD23037.1  [L=602]
Description: hypothetical protein NDAI_0A08850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.4e-45  153.7   0.7    1.1e-44  152.7   0.0    1.7  2  GDI             GDP dissociation inhibitor
     0.0089   16.2   0.0      0.023   14.9   0.0    1.7  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
  ------ inclusion threshold ------
      0.019   14.5   0.1       0.88    9.1   0.1    2.3  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.11   11.8   0.0       0.22   10.7   0.0    1.5  2  FAD_binding_3   FAD binding domain


Domain annotation for each model (and alignments):
>> GDI  GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   0.0   2.4e-48   1.1e-44       3     399 ..      46     462 ..      44     476 .. 0.82
   2 ?   -3.7   0.1      0.69   3.1e+03     376     431 ..     501     557 ..     498     560 .. 0.72

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 2.4e-48
                 XEECEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHH-TT........HHH....HHHH-....-GGG--EESS--BEETTSH CS
         GDI   3 eeydvivlGtGlkecilsGllsvdgkkvlhldrndyyGgesasltleqlyerfkle........ekp....eeklG....kdrdwnvdlipkfllanGe 85 
                 e+ dv+++G+G+ e +l+  ls +g  vlh+d+ndyyG  sa+lt+ q+ +   +         e+     +  +G    +++d+ +dl pk l+++ +
  CCD23037.1  46 EKVDVLIVGSGMVESVLAAALSWQGSTVLHIDKNDYYGDTSATLTVDQIKRWVDQInngsipfyENAklyvSTLIGsgkyASKDFGIDLSPKILFTKSD 144
                 678******************************************98875433322223343331111111122342222479**************** PP

                 HHHHHHHTTGGGCS-EEE-SEEEEEETCEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHH-BTTBGGGSTT--TTTSBHHHHHHHCT--HHHHHHH CS
         GDI  86 lvkiliktdvtrylefkaveGsyvykegkiakvpanelealaspllglfekrrakkfleyvseyeeddpktyedldlkkatmkevykkfdlsedtkdfi 184
                 l  il+k++v +ylef++++  + y+++   k+  +++e +a + l l+ kr + kf+++v ++++ +p+ ++    +++  + +++kf l++     +
  CCD23037.1 145 LLSILVKSRVHQYLEFQSLSNFHTYENDSFEKLTNTKQEIFADQKLPLMTKRNLMKFIKFVLNWDK-EPEIWKPYA-NRSMAEFLVEKFRLEKPQVFEL 241
                 ****************************************************************86.6999*9875.455556689*****99877667 PP

                 HHHTS--SSSGGGGSBCHHHHHHHHHHHHHHCCCSS-SEEEETT-.TTHHHHHHHHHHHHTT-EEETS--ECEEEE-TTS-EEEEEETTEEEEECEEEE CS
         GDI 185 GhalalyrdddylkqpaletleriklyaeslarygkspylyplyG.lGelpqgfarlsaiyGGtymlnkpvdevvldedgkvvGvkseeevakakkvic 282
                   +++l  +    +  + e+l+ri+ y +s   yg  p ly  yG  Gel qgf+r +a+ G ty ln++   v ++  ++v     +++v  ++kvi 
  CCD23037.1 242 LFSIGLCYNI---DTKVPEALQRIRRYLSSFDVYGPFPVLYSKYGgAGELSQGFCRSAAVGGATYKLNEKL--VSYNPTTNVALFSDGSKVNVVEKVIM 335
                 7899997764...45567899***********************648*********************987..56777777777888999********* PP

                 -GGG-CCCEEEEE....EEEEEEEEESS--TT.STT-SSEEEEE.-GG..GCTSSS-EEEEEEEGGGTSS-TT-EEEEEEEE--SS-HHHHTHHHHHTT CS
         GDI 283 dpsylpekvrkvg....kviraicilshpipn.tddadsvqiii.pqk..qlgrksdiyvalvssahnvaakgkylaivsttvetenpevelepalell 373
                  p+ + e  ++v     ++ r  ci+++  +   ++ +s  i++ p    + g k+ +  +++ s  + ++ g+ +  +stt +  + e +l+ ale +
  CCD23037.1 336 SPTQISEDSKNVPkqpyQIHRLTCIVEKDCSTwFSEGESAAIVVfPPGslKSGNKQVVQAFILGSGSECCPSGTCIWYLSTTEQGVRAELDLDAALEAM 434
                 ******88777653335899*******9987635788888887646551245689999999***********************************985 PP

                 -..SECEEEEEEEEEEEESSSSTTTSEE CS
         GDI 374 g..pieekfvkisdlyepvedgskdnif 399
                 +   i e  ++i d  + v+ gs+ +  
  CCD23037.1 435 ElsIIRETSTDIGDDEDIVQFGSNGQTL 462
                 5226888888888777766666666655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.69
                 ECEEEEEEEEEEEESSSSTTTSEEE----.-S-SBSHHHHHHHHHHHHHHHSS---- CS
         GDI 376 ieekfvkisdlyepvedgskdnifisksy.datshfettvedvkdiykrltGkkldl 431
                 ++  ++++++  e  + +++dn  + +s+  a   ++ +v+  k +y++++G++ d+
  CCD23037.1 501 VDPTLFNVNKDTEKFDPEASDNGVLYTSMpSAEISYDEVVTAAKVLYEKIVGSDDDF 557
                 666677777778888877777755555542677788899999999999999987665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.2e-06     0.023       1      46 [.      52      99 ..      52     117 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.2e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECETT..CEEC CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevpg..vrvd 46
                   IvG+G+  +v+A++L+ +g  vl ++k+d+ G  +a+ +v++  ++vd
     CCD23037.1 52 IVGSGMVESVLAAALSWQGSTVLHIDKNDYYGDTSATLTVDQikRWVD 99
                   9*******************************9999998877555554 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1    0.0002      0.88       3      33 ..      50      80 ..      48     151 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0002
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-H CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDide 33
                    + ++G+G v  v aa+l+ +g +v+ +D+++
      CCD23037.1 50 VLIVGSGMVESVLAAALSWQGSTVLHIDKND 80
                    7799*****************9999999986 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.9e-05      0.22       1      34 [.      47      80 ..      47      94 .. 0.89
   2 ?   -3.5   0.0         1   4.6e+03     103     135 ..     141     173 ..     132     181 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.9e-05
                   EEEEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  1 etdVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   ++dVlIVG+G +  +la  Ls +G  v+ ++k +
     CCD23037.1 47 KVDVLIVGSGMVESVLAAALSWQGSTVLHIDKND 80
                   58*****************************976 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1
                    -HHHHHHHHHHHHHHHTEEETCSEEEECCEECC CS
  FAD_binding_3 103 pqteleriLvehaeerglqvrfktevesleqde 135
                      ++l+ iLv++++ ++l+++   ++++ e+d 
     CCD23037.1 141 TKSDLLSILVKSRVHQYLEFQSLSNFHTYENDS 173
                    567889999999999999999999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4071.18
//
Query:       CCD23038.1  [L=856]
Description: hypothetical protein NDAI_0A08860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-10   39.2   1.8     0.0027   18.0   0.0    5.0  5  Kelch_3   Galactose oxidase, central domain
      4e-09   36.4   9.5    8.5e-06   25.7   0.4    4.8  5  Kelch_4   Galactose oxidase, central domain
    3.5e-07   30.1  11.2        0.7   10.0   0.1    5.9  6  Kelch_5   Kelch motif
    2.2e-06   27.8   6.1      0.033   14.5   0.4    5.2  5  Kelch_6   Kelch motif
     0.0056   16.6   9.3       0.52   10.4   1.6    4.6  5  Kelch_2   Kelch motif
      0.006   16.1   7.3       0.33   10.6   0.3    4.2  5  Kelch_1   Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.031        93       2      13 ..     273     285 ..     272     311 .. 0.72
   2 ?   -2.7   0.0       2.8   8.3e+03      20      46 ..     324     353 ..     321     354 .. 0.67
   3 !   18.0   0.0   8.9e-07    0.0027       3      45 ..     501     566 ..     500     568 .. 0.82
   4 !   12.6   0.0   4.2e-05      0.13       4      46 ..     674     725 ..     671     726 .. 0.76
   5 ?   -3.0   0.0       3.3   9.8e+03       8      23 ..     736     748 ..     735     754 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.031
     Kelch_3   2 drlyifGGlgd.d 13 
                 + lyifGGl +  
  CCD23038.1 273 GQLYIFGGLSAcY 285
                 679*****99762 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
     Kelch_3  20 dvyvydldtntWaei...aslppaRaghaa 46 
                  +yv+++++    +    +  pp+  + +a
  CCD23038.1 324 HLYVISINSQHLSRPeiwGHIPPPLLCMTA 353
                 678888887755544337777888888776 PP

  == domain 3  score: 18.0 bits;  conditional E-value: 8.9e-07
     Kelch_3   3 rlyifGGlgddgqdrl...ndvyvydl......dtn.......tWaei........aslppaRagha 45 
                 +++ifGG++ +g+d +   nd++++d+                t++ i        +++p++Ra++a
  CCD23038.1 501 TILIFGGYRQTGEDKYeamNDMWELDIpivvrgK-KsyykfadTVTAIkipidhenGNWPSPRAFFA 566
                 689*********9999***********9996641.266866666664455889999********997 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 4.2e-05
     Kelch_3   4 lyifGGlgddgqdrlndvyvydldtntWaei........aslpp...aRaghaa 46 
                 l+++GG +  ++++ +d++ ++++t  W +i        ++l p     +gh++
  CCD23038.1 674 LVLHGGSN--NNKVFGDMWWFNIETKIWSKIdthaktekDELIPiemKLVGHTM 725
                 89******..******************98866655555444333337777776 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 3.3
     Kelch_3   8 GGlgddgqdrlndvyv 23 
                 GGl+   q+ +n++y 
  CCD23038.1 736 GGLT---QEDVNELYK 748
                 8888...999999996 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.067     2e+02      12      22 ..     272     282 ..     266     283 .. 0.82
   2 ?   -3.4   0.0       3.4     1e+04      26      44 ..     387     406 ..     381     412 .. 0.76
   3 !    9.7   0.0   0.00028      0.83       7      36 ..     494     527 ..     488     528 .. 0.86
   4 !   25.7   0.4   2.8e-09   8.5e-06      12      44 ..     671     702 ..     667     708 .. 0.89
   5 ?    0.4   0.1      0.23   6.8e+02       9      20 ..     817     827 ..     809     830 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.067
     Kelch_4  12 dgtiylfGGrg 22 
                 +g +y+fGG +
  CCD23038.1 272 NGQLYIFGGLS 282
                 589******75 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.4
     Kelch_4  26 tllndl.ylldlstntWrrl 44 
                 +lln++ y+ld+ t +++++
  CCD23038.1 387 SLLNNTfYILDTVTFKFSKV 406
                 67888888999988777766 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00028
     Kelch_4   7 atsipdgtiylfGGrgedg....tllndlylldl 36 
                 + s++  ti +fGG+   g    +++nd++ ld+
  CCD23038.1 494 SYSTGVSTILIFGGYRQTGedkyEAMNDMWELDI 527
                 4456778**********99*************98 PP

  == domain 4  score: 25.7 bits;  conditional E-value: 2.8e-09
     Kelch_4  12 dgtiylfGGrgedgtllndlylldlstntWrrl 44 
                 +  ++l+GG +++ ++++d++ ++++t+ W+++
  CCD23038.1 671 KSVLVLHGGSNNN-KVFGDMWWFNIETKIWSKI 702
                 5679*********.9****************98 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.23
     Kelch_4   9 sipdgtiylfGG 20 
                 ++ +gt++++GG
  CCD23038.1 817 QC-NGTVVMIGG 827
                 44.59******9 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00025      0.76       7      36 ..     265     299 ..     261     306 .. 0.73
   2 !    6.2   0.0    0.0035        10       1      39 [.     344     398 ..     344     401 .. 0.69
   3 !   10.0   0.1   0.00023       0.7      15      40 ..     500     528 ..     488     528 .. 0.77
   4 ?   -2.9   0.1       2.6   7.7e+03       1      10 [.     558     567 ..     558     571 .. 0.85
   5 !    5.0   0.4    0.0082        24      17      41 ..     674     696 ..     666     697 .. 0.82
   6 ?    1.3   0.0      0.12   3.7e+02      13      27 ..     818     832 ..     811     839 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00025
     Kelch_5   7 ghcavtvsekiYvyGGkvg....rdgsvs.ddvyv 36 
                 + c++  ++++Y++GG ++     d++++ +d+yv
  CCD23038.1 265 YQCSIEFNGQLYIFGGLSAcyrnDDEIPNmSDFYV 299
                 55888999**********98874444444566665 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0035
     Kelch_5   1 iPppRaghcavtv.sekiYvyGGkv........grdgsvs........ddvyvLdl 39 
                 iPpp+ +  a ++ +  i +yGG+         + +g+++        + +y+Ld+
  CCD23038.1 344 IPPPLLCMTASKLtERHIVFYGGFEiktevscdT-NGKYYlkkssllnNTFYILDT 398
                 79999999999975899*******9888885541.444433333333477777776 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00023
     Kelch_5  15 ekiYvyGGkvg.rdgsv..sddvyvLdlp 40 
                 + i+++GG+ +  ++++   +d++ Ld+p
  CCD23038.1 500 STILIFGGYRQtGEDKYeaMNDMWELDIP 528
                 459*******9966666437*******98 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 2.6
     Kelch_5   1 iPppRaghca 10 
                 +P+pRa +++
  CCD23038.1 558 WPSPRAFFAY 567
                 79****9986 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.0082
     Kelch_5  17 iYvyGGkvgrdgsvsddvyvLdlps 41 
                 + ++GG +  +++v++d++ +++++
  CCD23038.1 674 LVLHGGSN--NNKVFGDMWWFNIET 696
                 5679****..*********887765 PP

  == domain 6  score: 1.3 bits;  conditional E-value: 0.12
     Kelch_5  13 vsekiYvyGGkvgrd 27 
                 +++ + ++GG+v+r+
  CCD23038.1 818 CNGTVVMIGGVVARR 832
                 7899********943 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.1    0.0068        20      10      21 ..     271     282 ..     261     286 .. 0.79
   2 ?   -2.9   0.0       3.3     1e+04      12      32 ..     322     340 ..     319     341 .. 0.72
   3 ?    3.8   0.0     0.026        79      12      34 ..     500     526 ..     489     528 .. 0.74
   4 !   14.5   0.4   1.1e-05     0.033      13      43 ..     672     702 ..     667     705 .. 0.86
   5 ?    1.9   0.0      0.11   3.1e+02       4      22 ..     812     830 ..     809     840 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0068
     Kelch_6  10 vggkiYifGGyt 21 
                  +g++YifGG++
  CCD23038.1 271 FNGQLYIFGGLS 282
                 79********96 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.3
     Kelch_6  12 g.kiYifGGytdsspylnkvwv 32 
                 + ++Y+++ +++   +l+++++
  CCD23038.1 322 NpHLYVISINSQ---HLSRPEI 340
                 559999998887...7777665 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.026
     Kelch_6  12 gkiYifGGytds....spylnkvwvyd 34 
                 ++i ifGGy +      ++ n++w +d
  CCD23038.1 500 STILIFGGYRQTgedkYEAMNDMWELD 526
                 79*******998888877777777655 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 1.1e-05
     Kelch_6  13 kiYif.GGytdsspylnkvwvydpetksWeql 43 
                 ++ ++ GG+++ ++ + ++w++++etk W+++
  CCD23038.1 672 SVLVLhGGSNN-NKVFGDMWWFNIETKIWSKI 702
                 6777779**99.9****************987 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.11
     Kelch_6   4 ghslvsvggkiYifGGytd 22 
                 g s+  ++g+++++GG ++
  CCD23038.1 812 GSSSLQCNGTVVMIGGVVA 830
                 567788**********876 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0066        20       7      25 ..     268     282 ..     262     304 .. 0.74
   2 ?   -1.5   0.0      0.99     3e+03      12      27 ..     359     386 ..     347     405 .. 0.59
   3 ?    1.8   0.0     0.092   2.7e+02      11      22 ..     499     512 ..     490     528 .. 0.64
   4 !   10.4   1.6   0.00018      0.52      14      44 ..     674     701 ..     667     703 .. 0.89
   5 ?   -2.1   0.1       1.5   4.6e+03       6      20 ..     814     828 ..     810     835 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0066
     Kelch_2   7 ssvpggkiyvvGGahtdnp 25 
                 s   +g++y++GG     +
  CCD23038.1 268 SIEFNGQLYIFGGL----S 282
                 44679********9....3 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.99
     Kelch_2  12 gkiyvvGGa............htdnpnl 27 
                   i+++GG+             ++++ +
  CCD23038.1 359 RHIVFYGGFeiktevscdtngKYYLKKS 386
                 5588999996655555555554444444 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.092
     Kelch_2  11 ggkiyvvGGa..ht 22 
                  + i+++GG+   +
  CCD23038.1 499 VSTILIFGGYrqTG 512
                 5669******7533 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00018
     Kelch_2  14 iyvvGGahtdnpnlsssdvhvldlekhvWee 44 
                 +++ GG+   n+n ++ d+++++ e++ W++
  CCD23038.1 674 LVLHGGS---NNNKVFGDMWWFNIETKIWSK 701
                 66679**...*****************9986 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.5
     Kelch_2   6 sssvpggkiyvvGGa 20 
                 ss  ++g ++++GG+
  CCD23038.1 814 SSLQCNGTVVMIGGV 828
                 5555689999***98 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0069        21      10      22 ..     271     283 ..     267     298 .. 0.84
   2 ?   -2.1   0.0         1     3e+03      27      41 ..     391     405 ..     387     406 .. 0.85
   3 ?    1.7   0.0     0.065   1.9e+02      14      33 ..     502     526 ..     500     527 .. 0.90
   4 !   10.6   0.3   0.00011      0.33      17      42 ..     677     702 ..     672     704 .. 0.91
   5 ?   -3.9   0.1       3.7   1.1e+04      10      19 ..     818     827 ..     812     832 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0069
                 ETTEEEEEEEBCS CS
     Kelch_1  10 vggkiYviGGsdg 22 
                 ++g++Y++GG + 
  CCD23038.1 271 FNGQLYIFGGLSA 283
                 69********987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1
                 EEEEEEETTTTEEEE CS
     Kelch_1  27 ssvevyDpetntWre 41 
                 ++++++D++t ++++
  CCD23038.1 391 NTFYILDTVTFKFSK 405
                 899******988876 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.065
                 EEEEEEBCS.....SSBEEEEEEEE CS
     Kelch_1  14 iYviGGsdg.....gnalssvevyD 33 
                 i ++GG++      ++a+++ + +D
  CCD23038.1 502 ILIFGGYRQtgedkYEAMNDMWELD 526
                 899******99999*****999888 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00011
                 EEEBCSSSBEEEEEEEETTTTEEEEE CS
     Kelch_1  17 iGGsdggnalssvevyDpetntWrel 42 
                  GGs++++   + ++++ et+ W+++
  CCD23038.1 677 HGGSNNNKVFGDMWWFNIETKIWSKI 702
                 6**********************985 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 3.7
                 ETTEEEEEEE CS
     Kelch_1  10 vggkiYviGG 19 
                 ++g +  iGG
  CCD23038.1 818 CNGTVVMIGG 827
                 5666666776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 6128.12
//
Query:       CCD23039.1  [L=711]
Description: hypothetical protein NDAI_0A08870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2409  (0.134363); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 4914.05
//
Query:       CCD23040.1  [L=916]
Description: hypothetical protein NDAI_0A08880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-07   30.3  33.7    6.3e-05   23.3   0.6    9.2  9  LRR_4     Leucine Rich repeats (2 copies)
    0.00019   21.2  24.4        1.1    9.5   1.1    7.1  6  LRR_6     Leucine Rich repeat
     0.0004   19.9  27.8      0.074   12.6   0.4    5.1  4  LRR_9     Leucine-rich repeat
  ------ inclusion threshold ------
      0.011   15.5   3.4      0.011   15.5   3.4    7.2  8  LRR_8     Leucine rich repeat


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.7   7.0         4   1.8e+04      10      15 ..     453     458 ..     439     467 .. 0.53
   2 ?   -3.4   0.5       3.4   1.5e+04      10      14 ..     479     483 ..     475     518 .. 0.51
   3 !    6.6   2.4    0.0024        11       6      43 ..     533     570 ..     531     571 .. 0.90
   4 !   18.9  13.6   3.3e-07    0.0015       2      41 ..     572     612 ..     571     615 .. 0.85
   5 !   16.5   5.1   1.8e-06    0.0083       2      39 ..     618     654 ..     617     662 .. 0.85
   6 !   23.3   0.6   1.4e-08   6.3e-05       3      39 ..     673     708 ..     671     711 .. 0.88
   7 ?    3.1   2.8     0.031   1.4e+02       2      43 ..     739     786 ..     738     799 .. 0.70
   8 !   10.6   6.2   0.00014      0.62       1      41 [.     810     852 ..     810     855 .. 0.80
   9 !   10.0   4.7   0.00022      0.97       3      34 ..     837     871 ..     835     881 .. 0.82

  Alignments for each domain:
  == domain 1  score: -8.7 bits;  conditional E-value: 4
                 SS---E CS
       LRR_4  10 nNqltd 15 
                 nN+++ 
  CCD23040.1 453 NNNIQG 458
                 344444 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.4
                 SS--- CS
       LRR_4  10 nNqlt 14 
                 nN++ 
  CCD23040.1 479 NNNIE 483
                 44443 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0024
                 EE--SS---E-S-HHH.-TT--EEE-.-S-----GGGGX CS
       LRR_4   6 LdLsnNqltdipllek.lpnLkeLdLsgNnlitdldeLk 43 
                 L +++  +t + +lek +p+L + +L +Nn++++l +++
  CCD23040.1 533 LIINDKSITNVVGLEKlMPQLLSCNL-DNNQLESLQGIP 570
                 6788889*******************.999****99876 PP

  == domain 4  score: 18.9 bits;  conditional E-value: 3.3e-07
                 S--EEE--SS---.E-S-HHH-TT--EEE-.-S-----GGG CS
       LRR_4   2 nLevLdLsnNqlt.diplleklpnLkeLdLsgNnlitdlde 41 
                 n  +L++snN+l+ +  +le lpnL++L+Ls Nn  +dl+ 
  CCD23040.1 572 NVLHLSCSNNNLSnSNCSLEHLPNLETLNLSKNNISSDLSI 612
                 5669*********66555999************98899875 PP

  == domain 5  score: 16.5 bits;  conditional E-value: 1.8e-06
                 S--EEE--SS---E-S-HHH-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdl 39 
                 +L+ ++LsnN+++++++++   + k L+L +Nn  +++
  CCD23040.1 618 HLKDVNLSNNRIRSLEGIN-TCQVKRLNLANNNISGTI 654
                 6999***************.9********777555665 PP

  == domain 6  score: 23.3 bits;  conditional E-value: 1.4e-08
                 --EEE--SS---E-S-HHH-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdiplleklpnLkeLdLsgNnlitdl 39 
                  e+LdLs+Nq+ +i ++++lp+L++L + +Nn+i+ l
  CCD23040.1 673 IEELDLSDNQIVSIINISSLPKLRKL-CVDNNPIEYL 708
                 699**********999999*******.55999*9866 PP

  == domain 7  score: 3.1 bits;  conditional E-value: 0.031
                 S--EEE--SS-.....--E-S-.HHH-TT--EEE-.-S.-----GGGGX CS
       LRR_4   2 nLevLdLsnNq.....ltdipl.leklpnLkeLdLsgN.nlitdldeLk 43 
                 nLe+L+L  +      +  ip  l  +p+Lk+L + g+ + +++ld+L+
  CCD23040.1 739 NLEILSLLETSstllqIGNIPTiLP-FPHLKSLRIDGFfPGLNKLDSLP 786
                 6666666654444455888888666.*********77545555555554 PP

  == domain 8  score: 10.6 bits;  conditional E-value: 0.00014
                 SS--EEE--SS.---E-S-.HHH.-TT--EEE-.-S-----GGG CS
       LRR_4   1 pnLevLdLsnN.qltdipl.lek.lpnLkeLdLsgNnlitdlde 41 
                 ++Le L L+   + t +p+ ++  +p LkeL+L++N  ++d+ +
  CCD23040.1 810 KRLERLRLNKIiNFTRLPNnFQFiCPLLKELNLNDN-ELDDFQN 852
                 689******7559*******6644*********888.6666554 PP

  == domain 9  score: 10.0 bits;  conditional E-value: 0.00022
                 --EEE--SS---E-S-HH.H-TT..--EEE-.-S- CS
       LRR_4   3 LevLdLsnNqltdiplle.klpn..LkeLdLsgNn 34 
                 L++L+L++N l d++++  + p   L+eL++ +N+
  CCD23040.1 837 LKELNLNDNELDDFQNFIhNVPAfnLQELSIVNNS 871
                 9***************774699999******8873 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   1.1   0.00024       1.1       1      17 [.     592     608 ..     592     609 .. 0.88
   2 !    6.2   0.6    0.0028        13       1      16 [.     615     630 ..     615     631 .. 0.90
   3 !    4.8   0.3     0.008        36       3      17 ..     638     652 ..     636     654 .. 0.85
   4 !    6.0   0.0    0.0033        15       5      15 ..     673     683 ..     671     684 .. 0.89
   5 ?   -3.2   0.0       2.8   1.3e+04       3      10 ..     765     772 ..     765     773 .. 0.83
   6 !    6.9   0.7    0.0016       7.2       2      17 ..     834     849 ..     834     849 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00024
       LRR_6   1 snthLteLdLsgNdIgD 17 
                 + ++L++L+Ls N+I+ 
  CCD23040.1 592 HLPNLETLNLSKNNISS 608
                 5689***********85 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0028
       LRR_6   1 snthLteLdLsgNdIg 16 
                 s+ hL+ ++Ls N I 
  CCD23040.1 615 SCIHLKDVNLSNNRIR 630
                 589**********995 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.008
       LRR_6   3 thLteLdLsgNdIgD 17 
                 + ++ L+L+ N+I++
  CCD23040.1 638 CQVKRLNLANNNISG 652
                 56899********97 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0033
       LRR_6   5 LteLdLsgNdI 15 
                 ++eLdLs+N+I
  CCD23040.1 673 IEELDLSDNQI 683
                 689*******8 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 2.8
       LRR_6   3 thLteLdL 10 
                 +hL++L +
  CCD23040.1 765 PHLKSLRI 772
                 69***976 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.0016
       LRR_6   2 nthLteLdLsgNdIgD 17 
                 ++ L+eL+L++N+++D
  CCD23040.1 834 CPLLKELNLNDNELDD 849
                 5679**********98 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   7.3    0.0021       9.6      31     120 ..     540     624 ..     510     629 .. 0.76
   2 !    4.0   0.7    0.0072        32      47      77 ..     622     651 ..     618     662 .. 0.85
   3 !   12.6   0.4   1.7e-05     0.074      42      83 ..     671     712 ..     659     754 .. 0.80
   4 !    9.1   2.6   0.00019      0.84      51     125 ..     796     872 ..     776     878 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0021
       LRR_9  31 ipvienlGatldqfdtidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsl 120
                 i+ +  l   + q+ + +l++n++  l+g+P    +  l+ +nn + + +  le  lPnle+l l++n++ +  dl  l+s  +l+ + l
  CCD23040.1 540 ITNVVGLEKLMPQLLSCNLDNNQLESLQGIPS--NVLHLSCSNNNLSNSNCSLE-HLPNLETLNLSKNNISS--DLSILVSCIHLKDVNL 624
                 555555566677888899*************5..67889999999999999996.79************974..5556666666665555 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0072
       LRR_9  47 idlsdndirkldgfPllkrlktlllnnnriv 77 
                 ++ls+n ir l+g+   + +k l l+nn i 
  CCD23040.1 622 VNLSNNRIRSLEGINTCQ-VKRLNLANNNIS 651
                 89************9875.899999999986 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 1.7e-05
       LRR_9  42 dqfdtidlsdndirkldgfPllkrlktlllnnnrivriaegl 83 
                  q + +dlsdn+i  + ++  l +l+ l ++nn i  + e+ 
  CCD23040.1 671 SQIEELDLSDNQIVSIINISSLPKLRKLCVDNNPIEYLYEEE 712
                 588999***************************998776654 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00019
       LRR_9  51 dndirkldgfPll.krlktlllnnn.rivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpv 125
                 + ++ ++ +f  l krl+ l ln+    +r+ ++++ + P l+el l++nel+++ ++   +   +l+ ls+++n+ 
  CCD23040.1 796 NGNMARMFDFHILpKRLERLRLNKIiNFTRLPNNFQFICPLLKELNLNDNELDDFQNFIHNVPAFNLQELSIVNNSF 872
                 4455555555555489999999974267999**************************99999999********9975 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.5       2.9   1.3e+04      34      43 ..     453     462 ..     453     463 .. 0.62
   2 ?   -0.4   0.3      0.22   9.9e+02      24      40 ..     550     566 ..     544     568 .. 0.69
   3 ?    7.7  14.4   0.00064       2.9       7      61 .]     557     606 ..     551     606 .. 0.82
   4 ?    7.5   4.3   0.00077       3.5       2      39 ..     618     652 ..     617     661 .. 0.78
   5 ?   15.5   3.4   2.5e-06     0.011      17      61 .]     663     705 ..     639     705 .. 0.83
   6 ?   -3.1   0.5       1.5   6.8e+03      20      33 ..     733     746 ..     728     757 .. 0.73
   7 ?   -2.6   0.0       1.1   4.8e+03      18      28 ..     773     783 ..     761     785 .. 0.55
   8 ?    3.3   5.9     0.015        68       3      60 ..     812     871 ..     810     872 .. 0.74

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.9
                 SS---GGGGG CS
       LRR_8  34 nNllttlspg 43 
                 nN+++ ++++
  CCD23040.1 453 NNNIQGINQN 462
                 5777777655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.22
                 -TT--EEE--SS---GG CS
       LRR_8  24 lsnLkvLdLsnNllttl 40 
                 +++L + +L nN+l++l
  CCD23040.1 550 MPQLLSCNLDNNQLESL 566
                 56666667777777665 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00064
                 E-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   7 dLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +L+nN+l+sl+       sn+ +L+ snN+l+  +  ++++Lp+L+ L+Ls N++
  CCD23040.1 557 NLDNNQLESLQGI----PSNVLHLSCSNNNLSNSN-CSLEHLPNLETLNLSKNNI 606
                 5666666666554....567**************6.*****************97 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.00077
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---G CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNlltt 39 
                 +L+ ++LsnNr+ sl+        ++k L+L nN+++ 
  CCD23040.1 618 HLKDVNLSNNRIRSLEGINTC---QVKRLNLANNNISG 652
                 688888888888888887766...68888888888875 PP

  == domain 5  score: 15.5 bits;  conditional E-value: 2.5e-06
                 -TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  17 ddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +  +F+ +s+ ++LdLs+N++ ++    +s+Lp+Lr+L +++N++
  CCD23040.1 663 SMNSFNCWSQIEELDLSDNQIVSII--NISSLPKLRKLCVDNNPI 705
                 55689999***************95..9***************87 PP

  == domain 6  score: -3.1 bits;  conditional E-value: 1.5
                 SSTT-TT--EEE-- CS
       LRR_8  20 aFkglsnLkvLdLs 33 
                  Fk  snL++L+L 
  CCD23040.1 733 NFKFKSNLEILSLL 746
                 56666888888884 PP

  == domain 7  score: -2.6 bits;  conditional E-value: 1.1
                 TTSSTT-TT-- CS
       LRR_8  18 deaFkglsnLk 28 
                 d++F gl++L 
  CCD23040.1 773 DGFFPGLNKLD 783
                 34444555554 PP

  == domain 8  score: 3.3 bits;  conditional E-value: 0.015
                 -SEEE-TTS-.-SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--..S-.EEE--SS- CS
       LRR_8   3 LtsLdLsnNr.ltslddeaFkglsnLkvLdLsnNllttlspgafsgLp..sLrsLdLsgNr 60 
                 L++L L++   +t l+  + + ++ Lk+L+L++N+l+ + ++ +++ p  +L++L + +N 
  CCD23040.1 812 LERLRLNKIInFTRLPNNFQFICPLLKELNLNDNELDDF-QNFIHNVPafNLQELSIVNNS 871
                 6666666666677777777777999************99.577777775558888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1704  (0.0950416); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 6445.99
//
Query:       CCD23041.1  [L=526]
Description: hypothetical protein NDAI_0A08890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.3e-178  592.5   0.3   5.1e-178  592.3   0.3    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  592.3   0.3  2.9e-182  5.1e-178       5     462 .]      65     520 ..      61     520 .. 0.98

  Alignments for each domain:
  == domain 1  score: 592.3 bits;  conditional E-value: 2.9e-182
                 SSSEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH CS
      Aldedh   5 esetievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvlryya 101
                 e++t+evinP+t+e+i++v ++ +edvd a +aA+eaf+  +w+++++ eR++ L+++a+l+e++ + +a +etl++Gk +++a+++v+ ++d+++  a
  CCD23041.1  65 EGKTFEVINPSTEEEICHVYEGREEDVDIAAKAAQEAFDngSWSTIDPLERGKALYRLAELIEKDLDVIASIETLDNGKAISSAKGDVQLVVDYFKASA 163
                 3488***********************************989********************************************************* PP

                 HHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHH CS
      Aldedh 102 elaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgeal 200
                 +la kl+g+ ++s ++++++++rePlGv+g+I+PWNfPll++awk+apal++GNtvvlK ae tplsal+ a+ + eag+P+gv+n+v+g g+ vgea+
  CCD23041.1 164 GLACKLDGRQVNSGSNYFNYTKREPLGVCGQIIPWNFPLLMWAWKIAPALITGNTVVLKTAESTPLSALYTAKYIPEAGIPPGVVNIVSGFGKIVGEAI 262
                 ********9999977************************************************************************************ PP

                 HH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT--BS CS
      Aldedh 201 vehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakklkvg 299
                 ++hp ++kv+ftGst++g++i+++aa++lk+vtlElGGk+p+iv++da+++ av++i+ g+++n+G+vC+a+sr++v+es+yd+++++++ a +++kvg
  CCD23041.1 263 TTHPLIKKVAFTGSTTTGKHIYQNAAASLKKVTLELGGKSPNIVFADANMKTAVQNIILGIYYNSGEVCCAGSRVYVEESVYDDLIKEIKIASEAVKVG 361
                 *************************************************************************************************** PP

                 -TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESE CS
      Aldedh 300 dpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLa 398
                 dp+de+t  G+++s+ ql+k+ kyve +k+ega+l+ Gg   e+   kgyfv+Pt++ +v+++m+i++eEiFGPV+++ kfk++++++++aNd+eyGLa
  CCD23041.1 362 DPFDESTFQGAQTSQMQLSKILKYVEIGKNEGATLISGG---ERLGTKGYFVRPTIFGDVKENMQIVKEEIFGPVVTISKFKTLDDVVKMANDSEYGLA 457
                 ***************************************...77899**************************************************** PP

                 EEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 399 agvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 ag++t+++++a +va+rl+aG+v+iN++++++    pfgG+++SglGre++ e+l++y++vk+v
  CCD23041.1 458 AGIHTTNINNAVKVADRLKAGTVWINTYNDFHSAV-PFGGFNASGLGREMSYEALDNYLQVKAV 520
                 *********************************99.**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3852.73
//
Query:       CCD23042.1  [L=393]
Description: hypothetical protein NDAI_0A08900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-128  428.5  17.0   2.1e-128  428.2  17.0    1.1  1  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.2  17.0  1.2e-132  2.1e-128      32     324 ..      40     337 ..      27     338 .. 0.92

  Alignments for each domain:
  == domain 1  score: 428.2 bits;  conditional E-value: 1.2e-132
  Glyco_transf_15  32 ekstlefk..pkslvn..rgrkPiedenenAtllalvrnselakilrsikkvekrFnkkfnYpyvfindepftekfkekieklveeadvefgei 121
                      + s+++++  ++sl+     ++P + e+ +At+++l+rn++l ++l sik++e+rFn+kf+Y++vf+nd++fte+f ++++ +v+ +  ++g i
       CCD23042.1  40 QSSSQSYElkENSLIYtkLKQEPYHGEKPKATFVTLARNKDLSSLLDSIKSMEDRFNHKFQYDWVFLNDDEFTEEFINATSIIVS-GTAKYGRI 132
                      33333343003344332133456666666**************************************************999999.******** PP

  Glyco_transf_15 122 pkeewsyPefideekaakareelad..iaygdsesyrhmcRyysGlfykhellkkydyYwRvePdiklycdieyDvfkymkdekkiygFtlslk 213
                      pke+ws+Pe+id++kaa +r+++ +  i+ygds syrhmcR++sG+fy+h+llk+yd+YwRveP++k++cdi+yDvfk+m+d++k+ygF +s+k
       CCD23042.1 133 PKEHWSFPEWIDQDKAAAVRKKMKEdkIIYGDSISYRHMCRFESGFFYRHPLLKEYDWYWRVEPQVKFFCDIDYDVFKFMQDNNKKYGFSISMK 226
                      ***********************9999******************************************************************* PP

  Glyco_transf_15 214 eieetiktlWdstkkflkenkefieeknslsflsdddqdtynlCeFwsnfeigdldffrseayekfFeylDskGgffYerWgdapvhsiavsll 307
                      e+ +ti+tlWd+tkkfl++n+efi+ +n+l+f+sdd+++++n C+Fwsnfei++ld++rseay+k+F+ lD++GgffYerWgdap+hs+a++l+
       CCD23042.1 227 EYMQTIPTLWDTTKKFLAKNPEFIHPNNMLDFISDDNGESFNRCHFWSNFEIASLDLWRSEAYSKYFKALDEAGGFFYERWGDAPIHSMAAALF 320
                      ********************************************************************************************** PP

  Glyco_transf_15 308 lpkdkihffedigyshd 324
                      l++d+ih+f ++gy+h 
       CCD23042.1 321 LDRDEIHHFGEMGYYHP 337
                      ***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2711.36
//
Query:       CCD23043.1  [L=492]
Description: hypothetical protein NDAI_0A08910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-32  111.5   0.6    1.6e-32  111.5   0.6    2.6  2  SRP1_TIP1   Seripauperin and TIP1 family
  ------ inclusion threshold ------
        4.3    7.9  14.1         17    5.9   0.3    3.5  4  Toxin_6     BmTXKS1/BmP02 toxin family


Domain annotation for each model (and alignments):
>> SRP1_TIP1  Seripauperin and TIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.6   1.8e-36   1.6e-32       2      98 ..      23     121 ..      22     122 .. 0.96
   2 ?   -0.9   0.4      0.19   1.7e+03      36      68 ..     383     417 ..     372     424 .. 0.66

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 1.8e-36
   SRP1_TIP1   2 avaaaqteaevaelevllnDvksnlkeYlslakansgfslPsgvlsvyaalatat..ddsYttllseidfaevssmitglPWYssRLepaiesalaseg 98 
                 ++aa++++++++el+v++nD++sn++ Yls+++an+++++P+ + s++ +++ +t  d+++ttll+ id +e++smitg+PWYssRL+pai+++la+++
  CCD23043.1  23 TLAADDETVNMIELAVYVNDIHSNMAAYLSMQMANPEMAYPAVIESAVLKILLKTdpDNKFTTLLTGIDPEEITSMITGVPWYSSRLAPAISASLAARD 121
                 789************************************************9888889************************************99875 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.19
   SRP1_TIP1  36 nsgfslPsgvlsvyaal..atatddsYttllseid 68 
                 ++++++ ++v +       a+at+  Ytt  +++ 
  CCD23043.1 383 KQTVTVCDEVCKSKSSAsaAKATETAYTTKQKTVT 417
                 55556666666554433226778999999877765 PP

>> Toxin_6  BmTXKS1/BmP02 toxin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.5   1.4e+04      11      17 ..      52      58 ..      52      59 .. 0.85
   2 ?    5.1   0.7    0.0036        32      16      25 ..     355     364 ..     351     367 .. 0.83
   3 ?    5.1   0.7    0.0036        32      16      25 ..     385     394 ..     381     397 .. 0.83
   4 ?    5.9   0.3    0.0019        17      12      24 ..     411     423 ..     410     426 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.5
     Toxin_6 11 kgqkakp 17
                ++q+a p
  CCD23043.1 52 SMQMANP 58
                7****87 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0036
     Toxin_6  16 kptccnakCk 25 
                  +t+c+++Ck
  CCD23043.1 355 TVTVCDEVCK 364
                 59*******9 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0036
     Toxin_6  16 kptccnakCk 25 
                  +t+c+++Ck
  CCD23043.1 385 TVTVCDEVCK 394
                 59*******9 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0019
     Toxin_6  12 gqkakptccnakC 24 
                 ++++ +tc  ++C
  CCD23043.1 411 TKQKTVTCTEEVC 423
                 89*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2355  (0.131351); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.20u 0.32s 00:00:01.52 Elapsed: 00:00:00.47
# Mc/sec: 3123.61
//
Query:       CCD23044.1  [L=184]
Description: hypothetical protein NDAI_0B00100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-15   57.1   7.9      2e-15   56.7   7.9    1.2  1  Pmp3      Proteolipid membrane potential modulator


Domain annotation for each model (and alignments):
>> Pmp3  Proteolipid membrane potential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   7.9   1.1e-19     2e-15       1      49 []      25      74 ..      25      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 1.1e-19
        Pmp3  1 dillillaiilPPlaValksG.csadllinilLtllgylPgviHAfyiiy 49
                d+ll+++++++PP++V++++G +s+++l+n++L+l+ ++P++iHAfy+iy
  CCD23044.1 25 DLLLVIISVFVPPIGVLIRKGfFSKEFLLNFILFLILFFPATIHAFYVIY 74
                79***********************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1302.38
//
Query:       CCD23045.1  [L=319]
Description: hypothetical protein NDAI_0B00110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.51   10.2   4.0       0.38   10.6   0.3    2.1  2  Colicin   Colicin pore forming domain


Domain annotation for each model (and alignments):
>> Colicin  Colicin pore forming domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   2.1e-05      0.38      46      95 ..     115     165 ..     104     169 .. 0.85
   2 ?    0.4   0.3      0.03   5.3e+02     110     153 ..     251     295 ..     205     314 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.1e-05
     Colicin  46 kirslsdal.ksfekikrnlnkkikakdrvaiakalesvdkkilaenlekl 95 
                 ++ s++d + k   ++++ + +ki+ k+r  i k ++   +k l +nl+kl
  CCD23045.1 115 DMISITDDItKLASQYEQLVRNKISWKERILINKGFKVAIAKYLNHNLKKL 165
                 455555544277889**********************************98 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.03
     Colicin 110 kLl.eefkiavetGnWkPlfvkveaiaagiaasflssiafalavg 153
                 kL+ ++fki v+  + k l+  ++++a g+   +l  + + +  +
  CCD23045.1 251 KLRnDKFKIMVDPPELKFLIKGLKTLAEGMVFLALCVVLSNVFCS 295
                 555257899999999998888889988888766665544433332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1289  (0.0718947); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.48
# Mc/sec: 2008.07
//
Query:       CCD23046.1  [L=567]
Description: hypothetical protein NDAI_0B00120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.4e-139  463.7   0.2   4.3e-139  463.4   0.2    1.1  1  NAD_binding_5   Myo-inositol-1-phosphate synthase
    6.3e-43  145.5   3.1    1.6e-42  144.2   2.5    2.0  2  Inos-1-P_synth  Myo-inositol-1-phosphate synthase


Domain annotation for each model (and alignments):
>> NAD_binding_5  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.4   0.2  4.8e-143  4.3e-139       1     322 []      87     549 ..      87     549 .. 0.99

  Alignments for each domain:
  == domain 1  score: 463.4 bits;  conditional E-value: 4.8e-143
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5   1 lGvllvGlgGnngtTlvagvlankkglswetkeg....lkkanylGsvtqsstirlGkdeeegedvyvpikdllplvnpndlvfgGwDisslnlae 92 
                    +Gv+lvG+gGnngtT++a++lank++l++++k+g    +++  +lGs+tqsst+ lGk+++++edvyvp++++lp++npndl+++GwDis++n+ +
     CCD23046.1  87 IGVMLVGMGGNNGTTFLASLLANKNNLTFNNKDGpyniKERGGFLGSMTQSSTLYLGKNQQTNEDVYVPFNSILPMCNPNDLIISGWDISGENMFK 182
                    69*******************************9777678899***************************************************** PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5  93 amerakvldkdlqeqlkpelekikplksvydkdfiaanqeeradnvlkgk............skleqleqirkdireFkkknkldkvivlwtanTE 176
                    am+rakvl++dlqe+lkp +e+++plks+y++dfia+nq +radn+++ +            +k++ l +ir++i++Fk++nkldkvi+lwta+TE
     CCD23046.1 183 AMQRAKVLEYDLQEKLKPLMESYTPLKSIYYPDFIAMNQLDRADNCINYTtkgtnhdaysikNKWNDLLTIRQNIKDFKNDNKLDKVIILWTATTE 278
                    ***********************************************9999********************************************* PP

                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................... RF
  NAD_binding_5 177 ryievipgvndtlenllkaikeneeeispstiyavAailegvpyingsPqntlvpglvelAekkgvfiaGdDfKt..................... 251
                    +++evipg+ndt+enll++ik+n++ei+psti+a+A+ile++pyingsPqnt+vpgl++lAe+++v+iaGdDfKt                     
     CCD23046.1 279 KFAEVIPGINDTFENLLNSIKANHKEIAPSTIFATASILENCPYINGSPQNTFVPGLIDLAERENVLIAGDDFKTgqtklksvlaqflidagikpi 374
                    ************************************************************************************************ PP

                    ................................................................................................ RF
  NAD_binding_5 252 ................................................................................................ 251
                                                                                                                    
     CCD23046.1 375 siasynhlgnndglnlssslqfkskeitksnviddmiksnqilypqsdkmkkknkdvdhcivikymesigdskvamdeyynelmlgghnrisihnv 470
                    ************************************************************************************************ PP

                    ....xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5 252 ....lLAaPlilDLvllveLaqrvevkk....ekkkefkklesvlsllsyflKaPlvskgtkvvnalfkQraalenilR 322
                        lLA+P+ilDL++++e+++r+++ +    + + +++++++vlsllsy+lKaPl+++g++++n l+kQr+al+n++R
     CCD23046.1 471 cedsLLASPIILDLIIMCEFCSRITYIEsgnqQGDGNYQQFYPVLSLLSYWLKAPLTRPGYEPINGLNKQRMALDNFMR 549
                    **************************9655558999******************************************9 PP

>> Inos-1-P_synth  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.5   1.4e+04      31      53 ..     288     310 ..     286     317 .. 0.76
   2 !  144.2   2.5   1.7e-46   1.6e-42       1     109 []     354     474 ..     354     474 .. 1.00

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.5
                     HHHHHHTTSHHHHHHHHHHHHHH CS
  Inos-1-P_synth  31 nnDgknlseeerfksKkisKssv 53 
                     n  ++nl ++ + + K+i  s +
      CCD23046.1 288 NDTFENLLNSIKANHKEIAPSTI 310
                     45588999999999999876655 PP

  == domain 2  score: 144.2 bits;  conditional E-value: 1.7e-46
                     SHHHHHHHHHHHHHHTT-EEEEEEEEEEE-HHHHHHTTSHHHHHHHHHHHHHHHHHHHSS--EEE................EEEEE-GGGTTEEE CS
  Inos-1-P_synth   1 GqTklksvLaellverglkvksivslNilGnnDgknlseeerfksKkisKssvvddivkanelly............vdhevvikYvpylgDsKv 83 
                     GqTklksvLa++l+++g+k+ si+s+N+lGnnDg+nls++ +fksK+i+Ks+v+dd++k+n++ly            vdh++vikY++++gDsKv
      CCD23046.1 354 GQTKLKSVLAQFLIDAGIKPISIASYNHLGNNDGLNLSSSLQFKSKEITKSNVIDDMIKSNQILYpqsdkmkkknkdVDHCIVIKYMESIGDSKV 448
                     9********************************************************************************************** PP

                     EEEEEEEEEGGGEEEEEEEEEEEEH. CS
  Inos-1-P_synth  84 aldeieseiflggkntielkleceDS 109
                     a+de+ +e++lgg+n+i++++ ceDS
      CCD23046.1 449 AMDEYYNELMLGGHNRISIHNVCEDS 474
                     *************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3935.08
//
Query:       CCD23047.1  [L=984]
Description: hypothetical protein NDAI_0B00130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.2e-192  639.5  45.0   9.9e-192  639.3  45.0    1.1  1  Vps35     Vacuolar protein sorting-associated protein 35
    0.00094   19.4  20.2      0.038   14.3   0.3    4.6  4  DUF3446   Early growth response N-terminal domain
  ------ inclusion threshold ------
        2.3    8.0  11.4      0.064   13.1   1.8    3.1  3  PH_13     Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> Vps35  Vacuolar protein sorting-associated protein 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  639.3  45.0  1.7e-195  9.9e-192       2     729 ..      21     904 ..      20     905 .. 0.87

  Alignments for each domain:
  == domain 1  score: 639.3 bits;  conditional E-value: 1.7e-195
       Vps35   2 LeealavvkeqsflmkraleedklmdaLkhasnmlseLrtssLsPkqYYeLYmavfdeLrh.LssyLkdehkkkkkkladLYelVQyagnivpRLYLli 99 
                 +e+a+ +++++++lm+++le+d+l+ aLkha+ ml+eLr+++LsPk+YY+LY+++fd L++ Ls+yL+++++++k +l ++Ye+VQy+gni+pRLYL+i
  CCD23047.1  21 VEKAIVTIDQHATLMNQYLEDDHLLLALKHATIMLTELRNPNLSPKDYYQLYLQCFDPLTNsLSKYLRTQSQNDKIDLYEIYEFVQYTGNILPRLYLMI 119
                 689********************************************************999************************************* PP

       Vps35 100 tvGtvyikskda..pakeilkDlvEmcrGvQhPiRGLFLRyYLsq......................mtkdlLpdteseeee....eegelkdsi.efl 169
                 +vG +y+++ +   +++eilkDl+Em+ G Qh+iRGLFLRy+++q                           L++++s+++     +++elk+ i e+l
  CCD23047.1 120 IVGINYLQFVEDlnTKNEILKDLMEMMLGEQHSIRGLFLRYFFIQfffsfsktpqdnvfeliafhpnPNDPPLSSSSSSTSLdhenDDEELKFIItEIL 218
                 ********998767999****************************999999999999999999988855555555544433355558999999887999 PP

       Vps35 170 ltNFiEmnkLWvRlqhqghsrerekrekeRkeLkiLVGsnLvrLsqLe...................gvdlelYkekiLpkileqivqcrDvlaQeYLl 249
                 ++NFiE+nkLW+++q +g+s+++++r+ eR+eLk+LVG ++v++s+L                    ++++++ k+++Lp +l++i+qc+D+l+QeYL+
  CCD23047.1 219 MKNFIEINKLWIKIQFHGPSSQKHQRHIERNELKTLVGFQIVKISELLppppssppssskdgvstssTSSIKILKNDFLPLYLQNIIQCNDSLSQEYLI 317
                 *******************************************************************9******************************* PP

       Vps35 250 dviiqvFpdefhlatLdkllsailklnpkvnikeilisLidRLakyaer.....ekksevpe.....dvdlfevfweqleelve............... 323
                 d++iq+Fp ef l++Ld+ll +i++l+p+v+i+ i+i+Li++++++ +      ++           d+ lfe+f+++l + ++               
  CCD23047.1 318 DIYIQIFPIEFILKNLDQLLLTIINLSPHVSIDIIIINLIEKFRTTSNIeseddKT-----IailveDNLLFEKFYNFLIKYIQqktmqtqisadsdeg 411
                 ********************************************999884433222.....234566999*********66654455555555555555 PP

       Vps35 324 ......arpdlsledilallesllnlslklypdnlenvdkvlelaaeklkeveleeleskeaeeellkLLl...............apikslksvltvl 401
                       +rp++ l ++l+l++++++l+l +yp+n+en++k++e+++++l+ +e+   ++k++  ++ +LL+                 i+s   +l+++
  CCD23047.1 412 nnnkigTRPRILLLSLLPLFDHIIQLTLFWYPNNFENLNKIFEVMKDNLNLIEF---NNKQNIIQIRQLLTfhnltlnangkeamgFIIDSN-FLLKLI 506
                 5556669*******************************************9777...9999***********************75444444.588888 PP

       Vps35 402 kl.enykells.ll.sy.ktrkkvaleivdailee.ketkietleevekllellsvlikdekd....kee....eefaeeqelvaklvhli..knddld 485
                 +  e+yk+l+  +l +y + + ++ +e+v+a++e+  e ++e++++++k++++l +++k + +    + +     +f++e  +++   +    k   +d
  CCD23047.1 507 TNsESYKSLIIdSLsNYrSLQYDILIELVSAFIENdIELQLESIDQLQKIYTYLPTTTKYTVSssytT-KsfqiYSFNYEFYIITSTKKNQelKYITID 604
                 8889****9986775555889************6545699****************999444223431.124444455554444433332211334469 PP

       Vps35 486 kqfklllllrkkllkg.......................gekrikytlpalitallklarklkklkkkekek..kekleekvkklfkfihqliselvsk 559
                 +q+++l++l+++llk+                       ++++i+ ++p++it+++++++k++ lk+k+ ++  k ++++ + +lfk+++++i++++ +
  CCD23047.1 605 SQIDILINLKNWLLKStkktmldnnelqhhhnqhyssgqNKNNIWGIYPSIITSFWRIINKCHILKSKQINDkfKLRYNQLIINLFKHLSKFINDILVN 703
                 999999999999999999999999999999999999999999*************************99988788899*******************99 PP

       Vps35 560 ae..............aaelalklflqaalvadqleleeiayefftqaftiYeesis.dskaqlqaivliigtLqktrsl....seenyetLitkltlh 639
                  +              + ++++kl+l+++++a+++++ +ia++f+tq+f+i e++++ ds+ q+++++l+i+tL++++      ++e +++L++++++ 
  CCD23047.1 704 PSfssssssssssssnNLQEIFKLILRTSTFAQNIQQFDIANDFITQSFIILEDQLNsDSSIQYESLLLLIRTLNQLKTNnannGNEVMNDLRIRCVSR 802
                 999999*******999899************************************9769****************9554434667788*********** PP

       Vps35 640 askLlkkkdqcravllcshLfwee.......eekyrdgkrvleCLqkslriAdsimdnavslelfveiLnkylyy....fekgneev.tekyingLiel 726
                 +skLlkkk+qcr+++lcs+L+ ++       e+++  +k ++eC+q+s+riAdsimd + s++l++eiLn+++y+     ++g   + +ek++++Liel
  CCD23047.1 803 CSKLLKKKHQCRSIYLCSYLWSNDndvkdkdESNQGARKYIMECIQRSIRIADSIMDGLISCQLLIEILNQCIYFntkaLSDGVFVIfNEKFMSSLIEL 901
                 **********************3235556667799999*************************************433323344444259********* PP

       Vps35 727 ike 729
                 ik+
  CCD23047.1 902 IKK 904
                 *97 PP

>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   2.3     0.025   1.5e+02      38      56 ..       3      21 ..       1      40 [. 0.43
   2 ?    1.3   0.4     0.071   4.3e+02      23      47 ..     180     199 ..     168     206 .. 0.47
   3 !   11.4   0.4   5.1e-05       0.3      20      54 ..     251     289 ..     234     310 .. 0.75
   4 !   14.3   0.3   6.3e-06     0.038      16      54 ..     682     719 ..     672     744 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.025
     DUF3446 38 sssssssssssssssspsl 56
                + s+s++sss++ s s+s+
  CCD23047.1  3 AASTSTTSSSNALSYSSSV 21
                3334444444444444433 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.071
     DUF3446  23 lvsglvgvanppsspssssssssss 47 
                 l++      ++p  p+  ssssss+
  CCD23047.1 180 LIA----FHPNPNDPPL-SSSSSST 199
                 444....3222322222.2222222 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 5.1e-05
     DUF3446  20 llslvs.glvgvan...ppsspssssssssssssssssp 54 
                 l  lv   +v++++   pp+s+++sss+  +s+ss+ss 
  CCD23047.1 251 LKTLVGfQIVKISEllpPPPSSPPSSSKDGVSTSSTSSI 289
                 667777778877767746666666788888888888775 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 6.3e-06
     DUF3446  16 waeellslvsglvgvanppsspssssssssssssssssp 54 
                 +++ +++l+  l +  n     +s ssssssssssss  
  CCD23047.1 682 YNQLIINLFKHLSKFINDILVNPSFSSSSSSSSSSSS-N 719
                 4455999999999888866655554444433333332.2 PP

>> PH_13  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.18   1.1e+03      40      81 ..      36      75 ..      29     101 .. 0.80
   2 ?   13.1   1.8   1.1e-05     0.064      11      76 ..     464     529 ..     455     599 .. 0.78
   3 ?   -1.3   0.2      0.28   1.7e+03      45      91 ..     698     742 ..     690     812 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.18
                EEEEESSEEEEEEEE----.-------S-SS--EEEEE-SS- CS
       PH_13 40 vgFLfNDFlLltqpvkklsvssaqeklfesksnaqfklYkkp 81
                  +L  D lLl+    ++ +++ ++  ++ k    ++lY + 
  CCD23047.1 36 NQYLEDDHLLLALKHATIMLTELRNPNLSPK--DYYQLYLQC 75
                568999******9999999999999999988..677888665 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.1e-05
                 -SSSB-SSSSB--EEEEEEEEETTT--EEEEEEESSEEEEEEEE----.-------S-SS--EEEE CS
       PH_13  11 vFNSltNclgpRkllhsGklyKaksnKElvgFLfNDFlLltqpvkklsvssaqeklfesksnaqfk 76 
                  FN + N++  R+ll + +l+    +KE +gF++   +Ll  ++++ s +s    ++++ ++ q+ 
  CCD23047.1 464 EFNNKQNIIQIRQLLTFHNLTLNANGKEAMGFIIDSNFLLKLITNSESYKSLIIDSLSNYRSLQYD 529
                 4*********************************99888888876666555544555555555554 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.28
                 SSEEEEEEEE----.-------S-SS--EEEEE.-SS-EETTSEEEE- CS
       PH_13  45 NDFlLltqpvkklsvssaqeklfesksnaqfkl.Ykkpiflnevlvkk 91 
                 ND   l++p+ + s ss+++++ +++ +  fkl  ++  f ++++ ++
  CCD23047.1 698 NDI--LVNPSFSSS-SSSSSSSSSNNLQEIFKLiLRTSTFAQNIQQFD 742
                 554..445542223.444555555666777886357888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (984 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1253  (0.0698868); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 6233.59
//
Query:       CCD23048.1  [L=470]
Description: hypothetical protein NDAI_0B00140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-80  270.1   2.8    1.8e-80  269.4   2.8    1.3  1  6PF2K       6-phosphofructo-2-kinase
    1.5e-37  129.2   0.0      2e-37  128.8   0.0    1.2  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)
    2.9e-05   24.3   0.0      7e-05   23.0   0.0    1.7  1  AAA_33      AAA domain
     0.0012   19.4   0.0     0.0025   18.3   0.0    1.5  1  AAA_18      AAA domain
     0.0066   15.9   0.2      0.011   15.2   0.2    1.3  1  KTI12       Chromatin associated protein KTI12
  ------ inclusion threshold ------
      0.043   13.1   0.0       0.13   11.5   0.0    1.8  1  Zeta_toxin  Zeta toxin
      0.052   14.0   0.0       0.31   11.5   0.0    2.2  3  AAA_17      AAA domain


Domain annotation for each model (and alignments):
>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.4   2.8     7e-84   1.8e-80       5     223 .]       5     223 ..       1     223 [. 0.99

  Alignments for each domain:
  == domain 1  score: 269.4 bits;  conditional E-value: 7e-84
                 HHHHT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS---GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--SEEEEE CS
       6PF2K   5 tvtnlknsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreaskalsdaeffrpdneealklreklalaalkdllaylneeegqvaifD 103
                 t++n+k+ k+++ +vGLpa+gK++is+k++ryl+wl+++ k+Fnvg+ rre      daeff+ +nee+ klr+k+  +++++l++++++e+g v+i D
  CCD23048.1   5 TISNDKDLKICVFMVGLPATGKSFISQKIVRYLSWLSIPVKCFNVGQSRRELGVVSPDAEFFNSQNEENYKLRQKALSNTMEQLFQWFEKEDGTVGIVD 103
                 78999********************************************************************************************** PP

                 S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTTEEEEE CS
       6PF2K 104 AtNttrerRklilefveennlkvlflesicsdeeiikeNikevklsspDYkdketeeaikdflkRlenyekqyeplddeedeelsyIkvidvgkslvvn 202
                 At +trerR++i++++e  ++k++fles+c+d e+i +Nik+++++spDY+d ++  a  df+k+++ y+++ye+l+ ++d+e++++k+i++ +++++n
  CCD23048.1 104 ATCSTRERRQWIIKQCEMYDIKPMFLESWCNDDELIMKNIKDINSTSPDYTDVDPMMAELDFKKKIQYYKNVYESLNSQTDSEVTFVKLINISEEVIIN 202
                 *************************************************************************************************** PP

                 ---SHHHHHHHHHHTT---S- CS
       6PF2K 203 nvqgylqsrivyyllNihlkp 223
                 ++q+ylqsriv+y++Ni+ kp
  CCD23048.1 203 KIQTYLQSRIVFYVMNIRIKP 223
                 *****************9986 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   0.0   7.7e-41     2e-37       1     191 [.     226     410 ..     226     413 .. 0.94

  Alignments for each domain:
  == domain 1  score: 128.8 bits;  conditional E-value: 7.7e-41
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS---EE...EE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepidai...ysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaee 96 
                 ++L RHGe+ +n+e++++  +d+ L+e+G + A++l e +++  +  +   ++S+lkR++qTa+ +      +  ++++L+E+d G+++g+t++ei+e 
  CCD23048.1 226 IWLSRHGESIYNVEKKIG--GDSLLSERGLQYAKKLKEMIEENAPGEDltvWTSTLKRTQQTAQYLN----FKKLQWKALDELDAGVCDGMTYEEIEEV 318
                 89************9655..69********************777776688*************988....57889*********************** PP

                 ..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-EEEEEE CS
  His_Phos_1  97 ypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglpleelrrleldnaslsvlefdeggwrlvrl 191
                 ype+++a+++d++ +r+ ggEs++dv+ R+++++ el++r++   +l+++H++v+r+++a+++++p ee + ++++ ++l +le ++ g +++++
  CCD23048.1 319 YPEDFKARDEDKYFYRYRGGESYRDVVIRLEPIIMELERREN---ILIITHQAVLRCIYAYFMNVPQEESPWMAIPLHTLIKLEPRAYGTKVTKM 410
                 **************************************9997...*****************************************999998876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.7e-08     7e-05       2      98 ..      16     125 ..      15     158 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2.7e-08
      AAA_33   2 vllvGlpGsGKstlaerllkklg.......avllssdtlrrrlfg........tdqqsktdytrvldrlyqilnelarkalsagrn.vildatnlsrre 84 
                 v++vGlp++GKs+ ++++++ l        ++ + +    r l +        + q ++++y+   + l +++++l++   ++ ++  i+dat+ +r++
  CCD23048.1  16 VFMVGLPATGKSFISQKIVRYLSwlsipvkCFNVGQSR--RELGVvspdaeffNSQ-NEENYKLRQKALSNTMEQLFQWFEKEDGTvGIVDATCSTRER 111
                 89****************99988776765544444443..3333333566664444.444566666777777777777777777664799********* PP

      AAA_33  85 rarflklarrlgvp 98 
                 r++++k  + ++ +
  CCD23048.1 112 RQWIIKQCEMYDIK 125
                 **999988766654 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   9.9e-07    0.0025       1      97 [.      16     127 ..      16     145 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 9.9e-07
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf......gvnlrdvakenglllevdpe...aldeskrldedkldklldaleenssaleegknlvidghlaelesea 90 
                 ++  G p++GK+ +++ + + l         +n+++  +e g + ++ ++   + +e+ +l+++ l + +++l ++ +  e+g + ++d   +  e  +
  CCD23048.1  16 VFMVGLPATGKSFISQKIVRYLSWlsipvkCFNVGQSRRELGVVSPDAEFfnsQNEENYKLRQKALSNTMEQLFQWFE-KEDGTVGIVDATCSTRERRQ 113
                 5678**************999844799999999999999999999999999999999*******************98.7888888*****99999999 PP

      AAA_18  91 akdikk.......v 97 
                 ++++++       +
  CCD23048.1 114 WIIKQCemydikpM 127
                 99877665555554 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   4.3e-06     0.011       4     125 ..      16     165 ..      15     223 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.3e-06
                 EEEE--TTSSHHHHHHHHHHHHHH............TT--EEEE-THHHH.TTSSS--GGGHHHHHHHHHHHHHHHH....TT...SEEEE-S---SHH CS
       KTI12   4 vvltGlPssGKstrakeLakalee............ekrsvvviddeslgiekdsykdsakekalRsslrsavkrdL....ske..kvVIvDslnyikg 84 
                 v + GlP++GKs +++++ ++l+             + r+  v++ ++  +++++ ++     +lR++  s+  ++L    +ke  +v IvD++  ++ 
  CCD23048.1  16 VFMVGLPATGKSFISQKIVRYLSWlsipvkcfnvgqSRRELGVVSPDAEFFNSQNEENY----KLRQKALSNTMEQLfqwfEKEdgTVGIVDATCSTRE 110
                 6799********************77777666666655555555544444444443333....344444444444442222554226889999999999 PP

                 HHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S................S CS
       KTI12  85 fRYeLyciakaakttlcvvyvvapldvlvkwneereekee..............y 125
                  R  ++  + +++++ + +   ++ d+l+  n +  ++++              +
  CCD23048.1 111 RRQWIIKQCEMYDIKPMFLESWCNDDELIMKNIKDINSTSpdytdvdpmmaeldF 165
                 9999999999999999988888888888888866666655556666666666652 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.1e-05      0.13      14     111 ..      11     113 ..       3     125 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.1e-05
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdele...rqgnvvrldpDdlRe....lhPeyeeilkadpkkaseltqkdaselvekllqeai.engyniivegtl 104
                 + ++ ++++G p+ GKs +++++ ++l        v  ++  + R+      P+ +e ++ + +++++l qk+ s  +e+l+q+   e g   iv+ t+
  CCD23048.1  11 DLKICVFMVGLPATGKSFISQKIVRYLSwlsI--PVKCFNVGQSRRelgvVSPD-AEFFNSQNEENYKLRQKALSNTMEQLFQWFEkEDGTVGIVDATC 106
                 56789*********************985331..22234444444412225788.66799999999999999999999999999861456667999999 PP

  Zeta_toxin 105 rspdvvk 111
                 ++ +  +
  CCD23048.1 107 STRERRQ 113
                 8877655 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.31       1      90 [.      19     116 ..      19     158 .. 0.64
   2 ?   -1.4   0.0       1.1   2.8e+03      97     119 ..     182     204 ..     165     210 .. 0.77
   3 ?   -3.2   0.0       4.2   1.1e+04      56      69 ..     254     267 ..     243     291 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                 EE-TTSSHHHHHHHHHHHH.....TEEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHH.....HSSE..EEEEE-SEEEETTE CS
      AAA_17   1 lGgPGsGKgtqceklveky.....gfthlsaGdllreeakrgglakardemrklpleekkelqkeaaekiaeea.....kkkg..vlvdghprikeqag 87 
                 +G+P  GK+++++k+v+ +      ++ ++ G+  re     g ++ + e+ + ++ee+ +l+++a  + +e+      k++g   +vd  ++++e+++
  CCD23048.1  19 VGLPATGKSFISQKIVRYLswlsiPVKCFNVGQSRREL----GVVSPDAEFFNSQNEENYKLRQKALSNTMEQLfqwfeKEDGtvGIVDATCSTRERRQ 113
                 7***************9665554489999*99988876....555555566666666666677777766666645566533333369999999988766 PP

                 EEE CS
      AAA_17  88 fld 90 
                  + 
  CCD23048.1 114 WII 116
                 443 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.1
                 HHHH..SEEEEEE--HHHHHHHH CS
      AAA_17  97 leelkpdaiilleadpeeilerr 119
                 +++ +++++ l+++++e+i+++ 
  CCD23048.1 182 QTDSEVTFVKLINISEEVIINKI 204
                 35666799999******999865 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.2
                 HHHHHHHHHHHHHH CS
      AAA_17  56 elqkeaaekiaeea 69 
                 ++ k+++e i+e+a
  CCD23048.1 254 QYAKKLKEMIEENA 267
                 33344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3456.60
//
Query:       CCD23049.1  [L=751]
Description: hypothetical protein NDAI_0B00150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-276  919.6  16.6   1.7e-276  919.3  16.6    1.1  1  Peptidase_S64  Peptidase family S64


Domain annotation for each model (and alignments):
>> Peptidase_S64  Peptidase family S64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  919.3  16.6  9.6e-281  1.7e-276      24     697 .]      13     746 ..       3     746 .. 0.92

  Alignments for each domain:
  == domain 1  score: 919.3 bits;  conditional E-value: 9.6e-281
  Peptidase_S64  24 psksnskskesgesssslkelrpifesekaseeessaeedsstelaesssekssskqssSlfSksrktystkqssaksssskakks.......ssv 112
                    ++++n   ++++e++ss     +++  +++ + +s +e+d+ te     +e++++k ssS+fSk+r+ty+t++ss+ ss+ +++k+       ss+
     CCD23049.1  13 NYNDN---DHNKENNSSS---PQNVPLDARPQISSFDEDDNITE-----AEEQETKPSSSIFSKGRSTYHTSNSSDFSSAFHSQKNthtklqtSSS 97 
                    22333...3333333333...34455577789999999999999.....8889999************************9966666667777899 PP

  Peptidase_S64 113 akaedvgkplrvletekltslntvleeeee.....skeksee....................................sesssseekessvkelee 167
                    +++ dvgkpl+vl+t++l+sln+v eee e           +                                    ++++s+++++s++++++ 
     CCD23049.1  98 THFGDVGKPLKVLQTHRLDSLNIVPEEEPEiilpdV-----TrssttghteptqfvepsfdsqakaiaipqqsqpqtlNHATSTKDYQSVTDRSNI 188
                    9***************************99655542.....3334468999***************************99**************** PP

  Peptidase_S64 168 esvekeLkqLeedlaelmddinqsvinlskavieaieffkeFleseekek..lefevttennsslrkilkivlhflDnlLksevyikskllLlkrf 261
                    ++v+keL++Le++l++lmddi+q+v+n+skavie+ieffk+F+ + ++ k  ++++++++nn slr i+kivlhf+DnlL s+  ++s+++Ll+r+
     CCD23049.1 189 DAVKKELHILETNLSDLMDDIHQNVTNISKAVIESIEFFKDFTLNFDELKlpKTYKFNFQNNYSLRVITKIVLHFIDNLLISDGLSNSRSILLRRY 284
                    ******************************************666655442278****************************************** PP

  Peptidase_S64 262 neflkklnieakse....................kesetlpklknfaigeekselpnedkiekimdkiaksdsssikdqeGsfiApilRGlskkls 337
                    ++flkkl+i++ s+                    ++s+ lp+++nf+i+ee+ ++p++ ki +im+k+++++ss+i++qeGsfiApilRGlsk+++
     CCD23049.1 285 MYFLKKLDISILSNdettndtdyfttinnlnssnMSSHPLPHMTNFCITEES-NFPSTIKIGEIMNKLTRTNSSTISEQEGSFIAPILRGLSKNSA 379
                    **********9999999***************99999***************.******************************************* PP

  Peptidase_S64 338 iLtlyFGlPdpqqehyelikalselfddvHvvvvkdqielaastveaeasksskklekesvee.............qkFklPfrvptdalsppiSl 420
                    iLt++FG+P+++q+h e++k+l++lf+dvH++++kd+i+++a+  + +++++ ++ ++++++              ++F++P+rv+ ++l+ppiS+
     CCD23049.1 380 ILTIMFGIPNLKQDHLEMVKVLYSLFPDVHFYCCKDYIKPCADILNLQQEQNISSSSTTTNHLfdnippssvsqsrYQFSPPYRVAPNPLQPPISM 475
                    *******************************************988774444332222222224566667777788******************** PP

  Peptidase_S64 421 SlstensskisGTlGGyiyPkidekkqpklksyagskFaitcaHVvLdesqdeypnvsvPSsvLislYkkalleesekyakkssekvafkeelkkl 516
                    S+s ++++ki+GTlGGyi+P+ide+ ++kl+++ags+FaitcaHVvL+esq+ +pnvs+PS++L+++Yk++l++e++ky+k+s+e+vaf ee++++
     CCD23049.1 476 SISRDENTKITGTLGGYIFPQIDES-NAKLSKFAGSTFAITCAHVVLSESQE-FPNVSIPSTILQTAYKTTLINEANKYPKNSKEQVAFIEEASHV 569
                    **********************999.*************************9.******************************************* PP

  Peptidase_S64 517 eeelknlkenkfGqvvWGERtlinvekklSDlaiiKvnkklkCeNtlGddvkfveydPaLrfdNlyvkkkvlklkrglkvFKiGsttkyTkGelng 612
                    e++++++k+nkfGqvvWGER++i+  +klSD+aiiKv+ k++CeNt+G d k++ +dP+Lrf+N+ vkkk+lk+k+glkvFKiGs++++T+G++ng
     CCD23049.1 570 ERNIEWQKNNKFGQVVWGERSIID--QKLSDFAIIKVDGKYHCENTIGIDPKSI-PDPTLRFQNTLVKKKILKVKSGLKVFKIGSSSNFTTGQING 662
                    ************************..****************************.***************************************** PP

  Peptidase_S64 613 iklvYWldgklqssEFvvnsdssplFAsgGDSGswiLtkledekgLgvlGmLHSyDGelkqFGLFtpiseileRLeeVTgikWdi 697
                    +k+vYW+dgklqssEF+v+s +sp+FA++GDSG+wiLtkled++gLgv+GmLHSyDGe+kqFGLFtpis+i+eRL++VTgi+Wdi
     CCD23049.1 663 AKIVYWADGKLQSSEFIVSS-PSPMFATAGDSGAWILTKLEDHVGLGVVGMLHSYDGEQKQFGLFTPISNIMERLNTVTGIQWDI 746
                    ********************.***************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (751 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 5662.92
//
Query:       CCD23050.1  [L=765]
Description: hypothetical protein NDAI_0B00160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.035   14.4   0.1       0.59   10.5   0.2    2.7  2  Thioredoxin_8  Thioredoxin-like
      0.086   13.2   6.1       0.43   10.9   6.4    2.1  2  zf-RING_2      Ring finger domain
       0.24   11.3   6.0       0.73    9.7   6.0    1.9  1  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
       0.37   10.6   6.6        1.2    8.9   2.5    2.7  2  zf-RING_11     RING-like zinc finger
       0.39   10.4   2.9       0.92    9.2   2.9    1.7  1  Zn_ribbon_17   Zinc-ribbon, C4HC2 type
        0.4   10.7   6.4        8.4    6.4   0.5    3.4  3  Prok-RING_1    Prokaryotic RING finger family 1
        5.2    7.1   6.4         14    5.7   6.5    1.8  1  zf-RING_5      zinc-RING finger domain


Domain annotation for each model (and alignments):
>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.38   9.8e+02      21      46 ..     603     628 ..     591     645 .. 0.81
   2 ?   10.5   0.2   0.00023      0.59      17      55 ..     716     754 ..     701     762 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.38
                    HHHHHHHHHHHHTTSEEEEEEE-SS- CS
  Thioredoxin_8  21 pklkelyeklkkkkkveivyvsldkk 46 
                    + l  + ++l+k++k+ +v v  d +
     CCD23050.1 603 EALATIRSNLNKEDKFGLVLVGKDGS 628
                    45777888999999999999999975 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00023
                    HHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGG CS
  Thioredoxin_8  17 kaftpklkelyeklkkkkkveivyvsldkkeeefekylk 55 
                    ++ t+klk+++++++k+ +++i+ +s+d   +++ + ++
     CCD23050.1 716 EKETKKLKRFEDQIRKDYQFNILTISVDDIANDYTAKFE 754
                    6789************************98888877765 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   6.4   0.00017      0.43       2      43 ..     199     249 ..     198     250 .. 0.66
   2 ?   -0.5   0.3      0.62   1.6e+03       2      12 ..     245     255 ..     244     261 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
   zf-RING_2   2 eCpICleel...ssadsvlllpCgHvfhreClerwlrssst......CPlC 43 
                 +C+ C e +    ++++vl l C+H+ h+eC  ++l s         C +C
  CCD23050.1 199 KCSMCEEMInytFQGEKVLELTCNHISHYECYLTILDSIYFnekfpdCKIC 249
                 7****76663333445588889*********98775433223336677777 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.62
   zf-RING_2   2 eCpICleelss 12 
                 +C IC + +++
  CCD23050.1 245 DCKICHKMVKP 255
                 7****765554 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   6.0   0.00029      0.73       1      41 []     200     249 ..     200     249 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00029
                 -TTT-S--SS-E......E-TTS--B-CHHHHHHHHC...TSSB-.-TTT CS
    zf-C3HC4   1 CpiCleeakepn.....elleCkHsfCskCirkilks...rkkvk.CPlC 41 
                 C+ C e++  +        l+C+H  +++C+++il+s   ++k++ C +C
  CCD23050.1 200 CSMCEEMINYTFqgekvLELTCNHISHYECYLTILDSiyfNEKFPdCKIC 249
                 8888888777767777899******************9997777779999 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.5   0.00047       1.2       2      28 ..     200     229 ..     199     230 .. 0.84
   2 ?    2.8   0.1      0.04     1e+02       1      13 [.     245     257 ..     245     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00047
  zf-RING_11   2 CsICLeefk...pgqalfilpCsHtFHfkC 28 
                 Cs C e +    +g+++  l C+H+ H++C
  CCD23050.1 200 CSMCEEMINytfQGEKVLELTCNHISHYEC 229
                 88888877765668899999********** PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.04
  zf-RING_11   1 eCsICLeefkpgq 13 
                 +C IC   +kp++
  CCD23050.1 245 DCKICHKMVKPKD 257
                 8******999876 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.9   0.00036      0.92       5      34 ..     198     231 ..     194     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00036
  Zn_ribbon_17   5 ksCayCelav....kgrvvlcgvCeHvlHasCar 34 
                   ++C++Ce  +    +g  vl   C+H+ H +C+ 
    CCD23050.1 198 EKCSMCEEMInytfQGEKVLELTCNHISHYECYL 231
                   68999986552222788899************85 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.084   2.2e+02      12      25 ..     150     163 ..     146     166 .. 0.86
   2 ?    6.4   0.5    0.0033       8.4       1      35 [.     194     230 ..     194     235 .. 0.85
   3 ?    3.4   0.3     0.028        71       6      19 ..     245     258 ..     238     260 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.084
  Prok-RING_1  12 kelkeedDiVvCpe 25 
                   +l+ +d iV+C++
   CCD23050.1 150 STLNTNDNIVICTD 163
                  678999******86 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0033
  Prok-RING_1   1 nytgkkCpvCgkelkee..dDiVvCpeCgtpyHraCy 35 
                  +y g+kC++C++ ++       V   +C    H +Cy
   CCD23050.1 194 KYIGEKCSMCEEMINYTfqGEKVLELTCNHISHYECY 230
                  589*********9987655788999999999999998 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.028
  Prok-RING_1   6 kCpvCgkelkeedD 19 
                   C++C+k +k++dD
   CCD23050.1 245 DCKICHKMVKPKDD 258
                  6***********99 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.5    0.0055        14       1      44 []     199     251 ..     199     251 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0055
   zf-RING_5   1 hCnkCfekl...skeekfyltsCgHifCekClkkll......ekeavCpiCrk 44 
                 +C+ C e +      ek+  ++C Hi + +C  + l      ek  +C iC+k
  CCD23050.1 199 KCSMCEEMInytFQGEKVLELTCNHISHYECYLTILdsiyfnEKFPDCKICHK 251
                 69999999988777778999**************9999999888899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5427.46
//
Query:       CCD23051.1  [L=223]
Description: hypothetical protein NDAI_0B00170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-05   22.4   5.4    6.4e-05   22.4   5.4    2.7  2  PIR             Yeast PIR protein repeat
  ------ inclusion threshold ------
       0.16   12.4   2.4       0.24   11.9   2.4    1.2  1  DUF4685         Domain of unknown function (DUF4685)
       0.73    8.0   7.9       0.88    7.8   7.9    1.3  1  RAP1            Rhoptry-associated protein 1 (RAP-1)
        4.1    5.4  13.8        4.9    5.1  13.8    1.1  1  Sporozoite_P67  Sporozoite P67 surface antigen
        4.9    6.7  12.4        6.9    6.2  12.4    1.1  1  SR-25           Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> PIR  Yeast PIR protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   5.4   1.8e-08   6.4e-05       3      14 ..      67      78 ..      66      83 .. 0.88
   2 ?   -8.5   6.3         5   1.8e+04      16      17 ..      89      90 ..      87      92 .. 0.46

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.8e-08
         PIR  3 aVSQIgDGQiQA 14
                +VSQIgDGQiQA
  CCD23051.1 67 VVSQIGDGQIQA 78
                7**********9 PP

  == domain 2  score: -8.5 bits;  conditional E-value: 5
         PIR 16 Ta 17
                T+
  CCD23051.1 89 TT 90
                33 PP

>> DUF4685  Domain of unknown function (DUF4685)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.4   6.6e-05      0.24      27      87 ..      54     116 ..      50     149 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.6e-05
     DUF4685  27 mkartgpLrashdivptvakasrdgqrsqapkpratlasrds..lqsGnlsdssSgesssgqr 87 
                  +a+t+  +a++d+v+ + +++ ++ +++++kp +t+++++   +   + s++sS  ss++  
  CCD23051.1  54 EIASTSAAKAKRDVVSQIGDGQIQAVATTTLKPTTTTTTSKTstTSTSSASKTSSSASSCAAS 116
                 6899******************88888888888877655544365666788888888888653 PP

>> RAP1  Rhoptry-associated protein 1 (RAP-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.9   0.00025      0.88      93     174 ..      46     130 ..       9     158 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00025
        RAP1  93 skkGsGksrvrsasaaaileedds.kddlefkasqsvv.ktskpksts.teslksssdskskasaksnvksaskyGesssseesa 174
                 s+ G     + s+saa    +  s  +d +++a  + + k+++  +ts t++  +ss sk+++sa s + sa+   + ss ++s 
  CCD23051.1  46 SSFGIAVKEIASTSAAKAKRDVVSqIGDGQIQAVATTTlKPTTTTTTSkTSTTSTSSASKTSSSASSCAASATVTPKDSSCKNSG 130
                 5556666677777777665555441588888887777668877766651556667889999999999999998877777766664 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  13.8    0.0014       4.9     234     315 ..      40     123 ..       6     134 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0014
  Sporozoite_P67 234 gvlesnssseGeedddeeee...eenksiepgvGvpGvrvgaatssssttspssstttttpassgpsaqgshgsssrnavtrstd 315
                     gv +  +ss G  +++ ++    + ++ +  ++G + ++  a+t+   tt++++s t+tt++ss+  ++ s  s + +a+    d
      CCD23051.1  40 GV-AQFTSSFGIAVKEIASTsaaKAKRDVVSQIGDGQIQAVATTTLKPTTTTTTSKTSTTSTSSASKTSSSASSCAASATVTPKD 123
                     44.3334444444444333300034455667888888888788887777888888887777777744444444444444433344 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  12.4    0.0019       6.9      32      91 ..      59     122 ..      50     132 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0019
       SR-25  32 sasksqsrkassasekee....erskekkkkkrrrssssssssssssssssssssssssddrkk 91 
                 sa+k+++   s++ + +     +   + +  ++++++s++s+ss+s +sss+ss  +s     k
  CCD23051.1  59 SAAKAKRDVVSQIGDGQIqavaTTTLKPTTTTTTSKTSTTSTSSASKTSSSASSCAASATVTPK 122
                 4444444444444333333222222222333444455555555555555555555554444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1319  (0.073568); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 1759.44
//
Query:       CCD23052.1  [L=344]
Description: hypothetical protein NDAI_0B00180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-52  173.2  98.1      2e-08   33.6   9.4    7.9  7  PIR           Yeast PIR protein repeat
  ------ inclusion threshold ------
      0.072   13.1  18.5      0.085   12.8  18.5    1.1  1  TFIIA         Transcription factor IIA, alpha/beta subunit
        6.5    7.0   6.5         55    4.0   6.6    2.2  1  DUF2072       Zn-ribbon containing protein


Domain annotation for each model (and alignments):
>> PIR  Yeast PIR protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   3.6   9.9e-12   5.9e-08       3      18 .]      69      84 ..      68      84 .. 0.95
   2 !   33.0   7.8   5.1e-12   3.1e-08       1      18 []      94     111 ..      94     111 .. 0.96
   3 !   31.8   9.7   1.2e-11     7e-08       1      18 []     122     139 ..     122     139 .. 0.97
   4 !   33.6   9.4   3.3e-12     2e-08       1      18 []     147     164 ..     147     164 .. 0.97
   5 !   33.6   9.4   3.3e-12     2e-08       1      18 []     168     185 ..     168     185 .. 0.97
   6 !   29.0   9.5   8.9e-11   5.3e-07       1      18 []     189     206 ..     189     206 .. 0.97
   7 !   16.9   1.4   5.7e-07    0.0034       4      14 ..     212     222 ..     212     228 .. 0.94

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 9.9e-12
         PIR  3 aVSQIgDGQiQATTat 18
                +VSQI+DGQiQATT+t
  CCD23052.1 69 VVSQINDGQIQATTKT 84
                7*************98 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 5.1e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 Aa+VSQI+DGQiQATT+t
  CCD23052.1  94 AAVVSQITDGQIQATTKT 111
                 89**************98 PP

  == domain 3  score: 31.8 bits;  conditional E-value: 1.2e-11
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 Aa+VSQI+DGQiQATT+t
  CCD23052.1 122 AAVVSQITDGQIQATTST 139
                 89***************8 PP

  == domain 4  score: 33.6 bits;  conditional E-value: 3.3e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQIgDGQiQATT+t
  CCD23052.1 147 AAAVSQIGDGQIQATTST 164
                 89***************8 PP

  == domain 5  score: 33.6 bits;  conditional E-value: 3.3e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQIgDGQiQATT+t
  CCD23052.1 168 AAAVSQIGDGQIQATTST 185
                 89***************8 PP

  == domain 6  score: 29.0 bits;  conditional E-value: 8.9e-11
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQ +DGQiQATT+t
  CCD23052.1 189 AAAVSQVSDGQIQATTST 206
                 89***************8 PP

  == domain 7  score: 16.9 bits;  conditional E-value: 5.7e-07
         PIR   4 VSQIgDGQiQA 14 
                 +SQ +DGQ+QA
  CCD23052.1 212 ASQVTDGQVQA 222
                 7*********9 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8  18.5   1.4e-05     0.085      83     253 ..      52     235 ..       8     284 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
       TFIIA  83 pastsqslpslvipagksvqslt.a..nssaataatfslpakleppvqipagvtlqtasg..qlykvnv..qasgaqqiaaqplqqvvqq.sqgsaaqs 173
                 p +ts+  +s++i++   v++ +    + +++t a+ s++++   + qi  g+ + t+++  ++ +     +a + +qi   ++q ++++ s+++++++
  CCD23052.1  52 PIATSSASASASIAKRDVVSQINdGqiQATTKTTAKASTKTTAAVVSQITDGQIQATTKTasKTST--KttAAAVVSQITDGQIQATTSTiSKSKTTAA 148
                 444555555555666655555553256555566677777777777777777777777776322222..2347777778887777777665777777777 PP

       TFIIA 174 svaalqaqsqqaqalaepqqq.lekq......qqqqqqqqqqqqqqqvqqqqqe.........esqqaqqasqe......qvagsqvessqtdgaedal 250
                 +v+++  ++ qa++ +++  +  + q      q             ++++++ +         + q+++++  +      qv+ +qv+++ t++a++++
  CCD23052.1 149 AVSQIGDGQIQATTSTKTTAAaVS-QigdgqiQ-----A-------TTSTKTTAaavsqvsdgQIQATTST--KttqgasQVTDGQVQAEATSSASSSE 232
                 777777664443333333333122.12222221.....1.......1111111011111111111111111..11111222333333333333333222 PP

       TFIIA 251 eee 253
                 ++ 
  CCD23052.1 233 DST 235
                 221 PP

>> DUF2072  Zn-ribbon containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   6.6    0.0093        55      49     105 ..     204     258 ..      65     277 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0093
     DUF2072  49 lvaeaeeeieevldaeeteeeklekkekekaekekeeedrvesvrilepGsYelNle 105
                 + +++++ +++v d + ++e++   +++++++++++++d ve+v     G+ ++Nl+
  CCD23052.1 204 TSTKTTQGASQVTDGQVQAEAT--SSASSSEDSTTSSDDPVEAVSCKASGTLQMNLK 258
                 1122222244443333333333..34678888899999*****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1930  (0.107647); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.33s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 2376.35
//
Query:       CCD23053.1  [L=415]
Description: hypothetical protein NDAI_0B00190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-97  315.9 170.4      9e-09   34.7   6.2   12.9 13  PIR       Yeast PIR protein repeat
      0.007   16.3  11.9         24    5.0   0.0    6.2  8  HTH_37    Helix-turn-helix domain
  ------ inclusion threshold ------
       0.43    9.9  34.6       0.14   11.4  12.8    2.2  2  DUF4097   Putative adhesin


Domain annotation for each model (and alignments):
>> PIR  Yeast PIR protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   5.8   1.3e-11   7.7e-08       3      18 .]      63      78 ..      62      78 .. 0.96
   2 ?   -4.8   2.1         3   1.8e+04      14      18 .]      82      86 ..      82      86 .. 0.89
   3 !   34.7   6.2   1.5e-12     9e-09       1      18 []      88     105 ..      88     105 .. 0.96
   4 !   34.7   6.2   1.5e-12     9e-09       1      18 []     107     124 ..     107     124 .. 0.96
   5 !   34.4   7.6   1.8e-12   1.1e-08       1      18 []     126     143 ..     126     143 .. 0.96
   6 !   34.4   7.6   1.8e-12   1.1e-08       1      18 []     145     162 ..     145     162 .. 0.96
   7 !   34.4   7.6   1.8e-12   1.1e-08       1      18 []     164     181 ..     164     181 .. 0.96
   8 !   32.0   5.7     1e-11     6e-08       3      18 .]     185     200 ..     183     200 .. 0.95
   9 !   32.0   5.7     1e-11     6e-08       3      18 .]     204     219 ..     202     219 .. 0.95
  10 !   32.1   3.8   9.4e-12   5.6e-08       3      18 .]     223     238 ..     221     238 .. 0.95
  11 !   32.0   5.7     1e-11     6e-08       3      18 .]     242     257 ..     240     257 .. 0.95
  12 !   32.0   5.7     1e-11     6e-08       3      18 .]     261     276 ..     259     276 .. 0.95
  13 !   31.1   5.7   1.9e-11   1.1e-07       3      18 .]     280     295 ..     278     295 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.3e-11
         PIR  3 aVSQIgDGQiQATTat 18
                aVSQIgDGQiQATT+t
  CCD23053.1 63 AVSQIGDGQIQATTKT 78
                9*************98 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 3
         PIR 14 ATTat 18
                ATT+t
  CCD23053.1 82 ATTKT 86
                9**98 PP

  == domain 3  score: 34.7 bits;  conditional E-value: 1.5e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQI+DGQiQATT+t
  CCD23053.1  88 AAAVSQINDGQIQATTKT 105
                 89**************98 PP

  == domain 4  score: 34.7 bits;  conditional E-value: 1.5e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQI+DGQiQATT+t
  CCD23053.1 107 AAAVSQINDGQIQATTKT 124
                 89**************98 PP

  == domain 5  score: 34.4 bits;  conditional E-value: 1.8e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQIgDGQiQATT+t
  CCD23053.1 126 AAAVSQIGDGQIQATTKT 143
                 89**************98 PP

  == domain 6  score: 34.4 bits;  conditional E-value: 1.8e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQIgDGQiQATT+t
  CCD23053.1 145 AAAVSQIGDGQIQATTKT 162
                 89**************98 PP

  == domain 7  score: 34.4 bits;  conditional E-value: 1.8e-12
         PIR   1 AaaVSQIgDGQiQATTat 18 
                 AaaVSQIgDGQiQATT+t
  CCD23053.1 164 AAAVSQIGDGQIQATTKT 181
                 89**************98 PP

  == domain 8  score: 32.0 bits;  conditional E-value: 1e-11
         PIR   3 aVSQIgDGQiQATTat 18 
                 aVSQIgDGQiQATT+t
  CCD23053.1 185 AVSQIGDGQIQATTKT 200
                 9*************98 PP

  == domain 9  score: 32.0 bits;  conditional E-value: 1e-11
         PIR   3 aVSQIgDGQiQATTat 18 
                 aVSQIgDGQiQATT+t
  CCD23053.1 204 AVSQIGDGQIQATTKT 219
                 9*************98 PP

  == domain 10  score: 32.1 bits;  conditional E-value: 9.4e-12
         PIR   3 aVSQIgDGQiQATTat 18 
                 aVSQI+DGQiQATT+t
  CCD23053.1 223 AVSQIHDGQIQATTKT 238
                 9*************98 PP

  == domain 11  score: 32.0 bits;  conditional E-value: 1e-11
         PIR   3 aVSQIgDGQiQATTat 18 
                 aVSQIgDGQiQATT+t
  CCD23053.1 242 AVSQIGDGQIQATTKT 257
                 9*************98 PP

  == domain 12  score: 32.0 bits;  conditional E-value: 1e-11
         PIR   3 aVSQIgDGQiQATTat 18 
                 aVSQIgDGQiQATT+t
  CCD23053.1 261 AVSQIGDGQIQATTKT 276
                 9*************98 PP

  == domain 13  score: 31.1 bits;  conditional E-value: 1.9e-11
         PIR   3 aVSQIgDGQiQATTat 18 
                 aVSQI+DGQ+QATT+t
  CCD23053.1 280 AVSQIHDGQVQATTTT 295
                 9**************8 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.074   4.4e+02      34      58 ..      77     101 ..      57     106 .. 0.72
   2 ?    3.2   1.6     0.014        87      32      58 ..      94     120 ..      81     144 .. 0.61
   3 ?    1.8   1.5     0.038   2.3e+02      34      57 ..     115     138 ..     100     163 .. 0.62
   4 ?    2.1   0.2     0.033   1.9e+02      31      58 ..     150     177 ..     136     191 .. 0.70
   5 ?    3.3   0.1     0.013        77      34      57 ..     191     214 ..     162     217 .. 0.81
   6 !    5.0   0.0    0.0039        24      35      58 ..     211     234 ..     204     248 .. 0.83
   7 ?    3.3   0.0     0.013        79      35      58 ..     249     272 ..     242     277 .. 0.86
   8 !    4.5   0.0    0.0054        33      35      59 ..     268     292 ..     261     296 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.074
                 HHHHHHHHT--HHHHHHHHTT--TT CS
      HTH_37  34 qseaaqllgiaqPkvsrllrgklsr 58 
                 ++   + ++++ + vs++ +g+++ 
  CCD23053.1  77 KTTSKATTKTKAAAVSQINDGQIQA 101
                 4444556777778888888887765 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.014
                 --HHHHHHHHT--HHHHHHHHTT--TT CS
      HTH_37  32 lsqseaaqllgiaqPkvsrllrgklsr 58 
                 + + ++++ ++++ + vs++ +g+++ 
  CCD23053.1  94 INDGQIQATTKTQAAAVSQINDGQIQA 120
                 444455555555555555555555543 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.038
                 HHHHHHHHT--HHHHHHHHTT--T CS
      HTH_37  34 qseaaqllgiaqPkvsrllrgkls 57 
                 + ++++ ++++ + vs++ +g+++
  CCD23053.1 115 DGQIQATTKTQAAAVSQIGDGQIQ 138
                 445555555555555555555554 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.033
                 T--HHHHHHHHT--HHHHHHHHTT--TT CS
      HTH_37  31 elsqseaaqllgiaqPkvsrllrgklsr 58 
                 ++ + ++++ ++++ + vs++ +g+++ 
  CCD23053.1 150 QIGDGQIQATTKTQAAAVSQIGDGQIQA 177
                 4445567777778888888887777765 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.013
                 HHHHHHHHT--HHHHHHHHTT--T CS
      HTH_37  34 qseaaqllgiaqPkvsrllrgkls 57 
                 + ++++ ++++ P vs++ +g+++
  CCD23053.1 191 DGQIQATTKTTAPAVSQIGDGQIQ 214
                 457788888999999999888887 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.0039
                 HHHHHHHT--HHHHHHHHTT--TT CS
      HTH_37  35 seaaqllgiaqPkvsrllrgklsr 58 
                  ++++ ++++ P vs++ +g+++ 
  CCD23053.1 211 GQIQATTKTTAPAVSQIHDGQIQA 234
                 588999***************986 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 0.013
                 HHHHHHHT--HHHHHHHHTT--TT CS
      HTH_37  35 seaaqllgiaqPkvsrllrgklsr 58 
                  ++++ ++++ P vs++ +g+++ 
  CCD23053.1 249 GQIQATTKTTAPAVSQIGDGQIQA 272
                 589999**************9986 PP

  == domain 8  score: 4.5 bits;  conditional E-value: 0.0054
                 HHHHHHHT--HHHHHHHHTT--TT- CS
      HTH_37  35 seaaqllgiaqPkvsrllrgklsrf 59 
                  ++++ ++++ P vs++ +g+++  
  CCD23053.1 268 GQIQATTKTTAPAVSQIHDGQVQAT 292
                 589999***************9865 PP

>> DUF4097  Putative adhesin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5  16.1     0.013        79     124     222 ..      69     164 ..      54     183 .. 0.54
   2 ?   11.4  12.8   2.4e-05      0.14     104     241 ..     183     314 ..     169     327 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.013
     DUF4097 124 tltvksesGdvtiegseakk.lklqltsGdieleslsletldltsssGdltlsntklegsltitassGdvdlslpeekkaavdassesGdvslpkkree 221
                 +++++++    + +++++k+ +  q+++G+i++++ +   +  ++++G +++  ++++     +  +G ++++ +  ++aa   ++ +G++++ + +++
  CCD23053.1  69 DGQIQATTKTTSKATTKTKAaAVSQINDGQIQATTKTQAAAVSQINDGQIQATTKTQA-AAVSQIGDGQIQATTK--TQAAAVSQIGDGQIQATT-KTQ 163
                 4555555555555556666644455677777766666666666677777777666666.3334555666666655..555555566666666655.111 PP

     DUF4097 222 e 222
                  
  CCD23053.1 164 A 164
                 1 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 2.4e-05
     DUF4097 104 etlelksssGdltlsnvsaktltvksesGdvtiegseakklklqltsGdieleslsletldltsssGdltlsntklegsltitassGdvdlslpeekka 202
                   +  + ++G+++ +  +++ +  + ++G++++++ ++  +  q+++G+i++++ +l  +  ++ +G +++  ++ + +   +  +G ++++ +  ++a
  CCD23053.1 183 APAVSQIGDGQIQATTKTTAPAVSQIGDGQIQATTKTTAPAVSQIHDGQIQATTKTLAPAVSQIGDGQIQATTKTTA-PAVSQIGDGQIQATTK--TTA 278
                 445567778999999999999999999*****99999888********************************77777.8889999999999998..999 PP

     DUF4097 203 avdassesGdvslpkkreeeekesnsisaseknakkkvs 241
                     ++++G+v++ +    ++  + + +++++n+k  vs
  CCD23053.1 279 PAVSQIHDGQVQATT---TTSAAKPTSTSTSSNSKDPVS 314
                 9999***********...333444444445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1323  (0.0737911); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.40
# Mc/sec: 3086.32
//
Query:       CCD23054.1  [L=594]
Description: hypothetical protein NDAI_0B00200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-18   64.1   0.5      3e-17   62.5   0.5    2.0  1  DnaJ      DnaJ domain
     0.0074   16.6   0.0      0.019   15.3   0.0    1.6  1  DUF2277   Uncharacterized conserved protein (DUF2277)


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.5   3.4e-21     3e-17       1      63 []      18      79 ..      18      79 .. 0.95

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 3.4e-21
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +yY+iLg++++a+++eI+k+Y k a+k+HPDk+ k+ + +e Fk + +A+++L+d+e + +YD
  CCD23054.1 18 TYYSILGLHPQATDNEIRKSYMKFARKLHPDKS-KSDTCAELFKLVVHAHSILTDKELKLEYD 79
                69*******************************.66668999********************9 PP

>> DUF2277  Uncharacterized conserved protein (DUF2277)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.1e-06     0.019       9      51 ..      23      65 ..      20      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.1e-06
     DUF2277  9 rnlePpateeeiraAAlqyVRKvsGvrkpsaaneeaferAvee 51
                 +l P+at++eir + +++ RK+   ++ s++ +e f+  v++
  CCD23054.1 23 LGLHPQATDNEIRKSYMKFARKLHPDKSKSDTCAELFKLVVHA 65
                5799**************************9999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1333  (0.0743488); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4348.79
//
Query:       CCD23055.1  [L=400]
Description: hypothetical protein NDAI_0B00210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-71  238.5   0.0    1.1e-70  238.0   0.0    1.2  1  Pkinase        Protein kinase domain
    1.1e-39  136.2   0.0    1.7e-39  135.7   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
    4.9e-05   22.8   0.0    0.00014   21.3   0.0    1.6  1  Kinase-like    Kinase-like
  ------ inclusion threshold ------
      0.049   12.6   0.1      0.076   11.9   0.1    1.4  1  Haspin_kinase  Haspin like kinase domain
       0.14   12.1   1.3       0.14   12.1   0.0    1.7  2  APH            Phosphotransferase enzyme family
       0.21   12.2   5.9       0.41   11.3   5.9    1.4  1  Pex14_N        Peroxisomal membrane anchor protein (Pex14p) c


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.0   0.0   3.7e-74   1.1e-70       1     264 []      89     343 ..      89     343 .. 0.96

  Alignments for each domain:
  == domain 1  score: 238.0 bits;  conditional E-value: 3.7e-74
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 ++ l++lG+GsfG+V  +++ ++g+ +A+K++kk+ + k k+ +++  E  +l  ++hp++vr++++f++ ++++++++y+eggel++ll++++ +++ 
  CCD23055.1  89 FQILRTLGTGSFGRVHLIRSIHNGRFYALKVLKKHTIVKLKQvEHTNDERLMLSVVNHPFLVRMWGTFQDCEQIFMIMDYIEGGELFSLLRKSQRFPNP 187
                 57889*************************************9******************************************************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                  ak++a++++ +l+ylHs  ii+rDlKpeNiL+d++g++KitDFG+ak +   +   + +gt +Y+APEv+++++y k+vD+Ws G+++ye+l+g +pf
  CCD23055.1 188 VAKFYAAEVCLALDYLHSLDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDIT--YTLCGTLDYIAPEVVSTKPYNKSVDWWSFGILIYEMLAGYTPF 284
                 *************************************************99965..99***************************************** PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.....HHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.....aeellqhpyl 264
                 +++++ +++e++l+              kl+ ++ + e+++dll+kl++kd ++Rl+      +++++hp++
  CCD23055.1 285 YDSNTMKTYENILNS-------------KLKFPEFFHEDVRDLLSKLITKDLSERLGnlqngTDDVKSHPWF 343
                 *77777766666666.............78889999*********************9999999*******8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   0.0   5.5e-43   1.7e-39       2     249 ..      90     326 ..      89     330 .. 0.88

  Alignments for each domain:
  == domain 1  score: 135.7 bits;  conditional E-value: 5.5e-43
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  ++ ++lG G+fG+V+  +      ++    a+K+lk+++  +  + e +++ ++m ++ +hp +v++ g   + e+++++++y++gG+L + Lrk+  
   CCD23055.1  90 QILRTLGTGSFGRVHLIRSI----HNGRFYALKVLKKHTIVKLkQVEHTNDERLMLSVvNHPFLVRMWGTFQDCEQIFMIMDYIEGGELFSLLRKS-- 181
                  67899**********99988....66777899999776654431455555555555555************************************8.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                  +++       +a++v+ +++yL+s +++ rdl   N+Ll++n ++ki+DfG a+ +  d +y+        + ++apE++++k ++++ D WsfG+l+
   CCD23055.1 182 QRFPNPVAKFYAAEVCLALDYLHSLDIIYRDLKPENILLDKNGHIKITDFGFAKYV-PDITYT----LCGTLDYIAPEVVSTKPYNKSVDWWSFGILI 274
                  78888888889*********************************************.444443....345699************************* PP

                  HHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 196 wEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                  +E++  g +p+ + ++++++e++ +  +l+ pe  +e++ +l++k  ++d +eR
   CCD23055.1 275 YEMLA-GYTPFYDSNTMKTYENILN-SKLKFPEFFHEDVRDLLSKLITKDLSER 326
                  ****9.****************976.579******************9999998 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.6e-08   0.00014     157     285 ..     200     323 ..     164     326 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.6e-08
  Kinase-like 157 aanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPltl 252
                    +L+++ ++  +++++n+lld++g +++++f+    + +     + +    +  pE+++ +          +  ++d W  G+ iy + + + P+  
   CCD23055.1 200 LDYLHSLDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDITY--TLCgtLDYIAPEVVSTKP---------YNKSVDWWSFGILIYEMLAGYTPFYD 286
                  379***************************9975433333222..333225577899999832.........44589******************976 PP

  Kinase-like 253 ateeakeew....kfklckkipekvkaLlkkfLqlsq 285
                         e     k+k  +   e v+ Ll k++  + 
   CCD23055.1 287 SNTMKTYENilnsKLKFPEFFHEDVRDLLSKLITKDL 323
                  6665555542222444444455678888888887665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.5e-05     0.076     225     256 ..     205     236 ..     103     250 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.5e-05
  Haspin_kinase 225 kfeFEHRdLhldniLvdknlnvtlidlklsRl 256
                    +++   RdL+ +niL+dkn+++ + d+  +++
     CCD23055.1 205 SLDIIYRDLKPENILLDKNGHIKITDFGFAKY 236
                    566668*********************98876 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.9         3   8.9e+03     130     158 ..      27      45 ..      15      62 .. 0.47
   2 ?   12.1   0.0   4.6e-05      0.14     165     198 ..     205     236 ..     157     241 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3
                 HCHHHCCCGCCTCCHHHHHHHHHHHHHHH CS
         APH 130 esatarllaselldlleeleeqvlaalaa 158
                 +++++          ++e ++   ++l +
  CCD23055.1  27 PQQQQ---------HQQEHDQ-GQQELQQ 45 
                 22222.........2233333.3333333 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.6e-05
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-EE CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedagl 198
                 +  ++ +Dl+p N+l+d  +g++  + Df++a++
  CCD23055.1 205 SLDIIYRDLKPENILLD-KNGHI-KITDFGFAKY 236
                 566899***********.77777.8******998 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.9   0.00014      0.41      37     124 ..      11      68 ..       3     104 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
     Pex14_N  37 eEIeeaLkraereeeasesavaassaseqaqeesasssatpqpqaasqtsqsspspsppaqqqqqqyrpPivtypefltkppkppppP 124
                 +EI +a+++++r+e+  +++     + +q++++                        ++  qqqq++ pPi+  pe +++p+++ + P
  CCD23055.1  11 KEIGQAINDSQRQEQLPQQQ-----QHQQEHDQG-----------------------QQELQQQQPPAPPIQ--PEHHQHPHPNTQGP 68 
                 55666666644433333221.....111111111.......................111222222223333..22223222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1391  (0.0775838); expected 358.6 (0.02)
Passed bias filter:                      838  (0.0467399); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.38
# Mc/sec: 3129.65
//
Query:       CCD23056.1  [L=881]
Description: hypothetical protein NDAI_0B00220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-44  151.7   0.5    4.6e-44  150.8   0.0    1.7  2  Pkinase      Protein kinase domain
    1.5e-18   67.0   0.0    3.2e-18   66.0   0.0    1.6  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.029   13.7   0.1      0.064   12.6   0.1    1.5  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
      0.096   12.6   0.2       0.27   11.1   0.2    1.6  1  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       1.3   5.7e+03       5      18 ..     573     586 ..     571     589 .. 0.85
   2 !  150.8   0.0     1e-47   4.6e-44      23     264 .]     606     870 ..     597     870 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.3
                 EEEEEESSEEEEEE CS
     Pkinase   5 eklGeGsfGkVyka 18 
                  ++G+G++G V  +
  CCD23056.1 573 GTIGHGAYGIVKVC 586
                 68********9877 PP

  == domain 2  score: 150.8 bits;  conditional E-value: 1e-47
                 TTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHS.........CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH....HHSS--HHHHHHHHHH CS
     Pkinase  23 tgkivAvKkikkekakkkke..kkvlrEikilkklk.........hpnivrlyevfeekdelylvleyveggeladlle....rkgslseeeakkiakq 106
                 ++  +AvK++k ++++  ++  +++++E  i ++l+         +pni+++++ +e++d+++ v+e+++ g+l ++l+      ++l + ea  ++kq
  CCD23056.1 606 QKLFFAVKELKPKQNDPIEKfsTRITSEFIIGHSLSrchkkgdrvSPNILKVIDLLENNDTFFEVMEFCPAGDLYSILTrkskSGTALHPLEADCFMKQ 704
                 56679**********999999999****9887777666344445668*******************************9655233347777******** PP

                 HHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HH.HHTTSCB.SHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 107 ilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPE.vlkeney.skkvDvWslGvilyelltgkppfs 198
                 +l+g++y+H++g+ H+DlKpeNiL++ +g lKi+DFG ++ +++  +      +  +g++ Y+APE  ++++ey  + vDvWs+Gv+  +++ g+ +++
  CCD23056.1 705 LLHGVKYMHDHGVAHCDLKPENILFHPDGLLKICDFGTSCVFQTAWEkhvhfQSGAMGSEPYVAPEeFIRDKEYdPRLVDVWSCGVVYCTMVLGHYLWK 803
                 ****************************************99988777899778899********7356*****6678********************9 PP

                 TSSHHH..HHHHHHHTHHHHHHHCT..SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 199 gekgke..kvekeldqlekilkilg..etkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                    +++   +e+ +++   ++k  +    +e  + +s++ +  k +l kl++++p++R+t+++ll+++++
  CCD23056.1 804 IAIKEKdgLYESYIQE---MTKEKEfyIFEELRHVNSDLTRLRKLILYKLFQWNPERRITIDQLLASSWM 870
                 4333220023333333...33332243566677777777888888899********************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   7.1e-22   3.2e-18      60     199 ..     651     796 ..     571     866 .. 0.76

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 7.1e-22
                  BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT..TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTT CS
  Pkinase_Tyr  60 hpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke..kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiek 155
                   pni+k++ +  ++++ + v+e+++ GdL + L++k+k+  +l+  +  +f+ q+ +G++y++++ + H dl   N+L + + + ki+DfG +   ++
   CCD23056.1 651 SPNILKVIDLLENNDTFFEVMEFCPAGDLYSILTRKSKSgtALHPLEADCFMKQLLHGVKYMHDHGVAHCDLKPENILFHPDGLLKICDFGTSCVFQT 748
                  589*******************************9955511555667789*****************************************9988755 PP

                  ..SSEEEETTSSTSGGGGS-HH.HHHHSEEE.HHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 156 ..ddeyvkkeeaklpvkWmapE.slkekkft.sksDvWsfGvllwEif 199
                    +++ + +++a  +  ++apE  +++k++     DvWs Gv+   ++
   CCD23056.1 749 awEKHVHFQSGAMGSEPYVAPEeFIRDKEYDpRLVDVWSCGVVYCTMV 796
                  11444577788889999***973578888983569*******976554 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.4e-05     0.064     125     155 ..     703     733 ..     674     750 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
         Kdo 125 kavgrliaklhragvnHadlyaknillqqee 155
                 k++   ++ +h+ gv H dl + nil++ ++
  CCD23056.1 703 KQLLHGVKYMHDHGVAHCDLKPENILFHPDG 733
                 566667899*******************987 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   6.1e-05      0.27     164     197 ..     713     744 ..     696     751 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.1e-05
                 S-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                  ++++ H+Dl+p N+l++pd   +  + Df++++
  CCD23056.1 713 HDHGVAHCDLKPENILFHPD--GLLKICDFGTSC 744
                 567899************55..554699999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (881 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 6078.87
//
Query:       CCD23057.1  [L=944]
Description: hypothetical protein NDAI_0B00230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-18   66.0   0.5    3.2e-17   63.5   0.5    2.5  1  CAP       Cysteine-rich secretory protein family


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.5   1.8e-21   3.2e-17       2     126 .]     651     765 ..     650     765 .. 0.84

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 1.8e-21
                 HHHHHHHHHT.T----EE-HHHHHHHHHHHHHHHHH.T---S-GGG--HHHHHHTT-TEEEEEES--CCCHHHHHHTSHH..............HHHHH CS
         CAP   2 eahNeyRaaa.glppLkwdatLekaAqdhardcaashsdsssspeggdllkyaenagkeniaaaseaaedavdsWysepgtynkgketegs.ighftnl 98 
                 +a N+ Ra + + ppL+w+++L++ Aqd+a++             g+d++    ++g  ++ aa  ++   vd+Wy e ++yn+++ + +s ++hft+l
  CCD23057.1 651 QAQNDKRALHeDTPPLTWSEDLATYAQDYADQY----------VCGSDIVHSGGPYG--ENIAAGTSPVGSVDAWYAEGAYYNYSNPGFSSaTSHFTQL 737
                 667777754415688*****************9..........55666666666666..5555569********************************* PP

                 T-SS--EEEEEEEEBTTS-E..EEEEEE CS
         CAP  99 lwpkstkvGcavatcgngsftfivvcny 126
                 +w+++t+vGc+++ c++ + + +v+c y
  CCD23057.1 738 IWKSTTEVGCGIKDCSSIGWGDYVICSY 765
                 ****************986678888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (944 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.29u 0.33s 00:00:01.62 Elapsed: 00:00:00.54
# Mc/sec: 5306.57
//
Query:       CCD23058.1  [L=95]
Description: hypothetical protein NDAI_0B00240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-33  112.5   2.1    7.3e-33  112.4   2.1    1.0  1  UcrQ        UcrQ family
    5.4e-05   23.5   0.1    7.8e-05   23.0   0.1    1.3  1  Cyt_b-c1_8  Cytochrome b-c1 complex subunit 8


Domain annotation for each model (and alignments):
>> UcrQ  UcrQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   2.1   8.1e-37   7.3e-33       1      77 [.      13      89 ..      13      90 .. 0.99

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 8.1e-37
                BTTB-S----BSEEEEEE-GGGB-SSTTTTTTSSSSTTCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHH CS
        UcrQ  1 wfGnlgspkqkgiitYslSPfeqkafagalskaifntlrRtksqvlyvlppfiiayliykwakeeneylnrKagrde 77
                w+G++gsp+qkgi++Ys+SP++qk++ag++++a  nt+rR+ksq+lyvl+p+ i+++++++++e+ne+l++Kagr+e
  CCD23058.1 13 WWGHMGSPPQKGITSYSVSPYAQKPLAGIFHNAYYNTFRRFKSQALYVLIPAGIYWYWWTNGREYNEFLYTKAGREE 89
                9**************************************************************************87 PP

>> Cyt_b-c1_8  Cytochrome b-c1 complex subunit 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   8.7e-09   7.8e-05      13      58 ..      28      69 ..      19      80 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 8.7e-09
  Cyt_b-c1_8 13 YtlSPmqqkvmrglfkdlpkkiakkvkenwvsavlllvplvGtygY 58
                Y++SP+ qk + g+f+++ +++ +++k    +a+ +l+p  G+y+Y
  CCD23058.1 28 YSVSPYAQKPLAGIFHNAYYNTFRRFK---SQALYVLIP-AGIYWY 69
                **************************4...445555666.689998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       351  (0.0195772); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 717.38
//
Query:       CCD23059.1  [L=468]
Description: hypothetical protein NDAI_0B00250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-89  298.8  32.1    3.7e-89  298.8  32.1    3.0  3  Ebp2         Eukaryotic rRNA processing protein EBP2


Domain annotation for each model (and alignments):
>> Ebp2  Eukaryotic rRNA processing protein EBP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -16.4  31.5         1   1.8e+04     127     236 ..      52     153 ..      42     163 .. 0.37
   2 ?  -19.4  32.3         1   1.8e+04     126     206 ..     121     200 ..      88     211 .. 0.37
   3 !  298.8  32.1   2.1e-93   3.7e-89       2     268 .]     210     464 ..     206     464 .. 0.95

  Alignments for each domain:
  == domain 1  score: -16.4 bits;  conditional E-value: 1
        Ebp2 127 aakkaseearkqRelkkfgKqvqveklqeRqkeKketlekikklkkkrkkldfleeeeedefdvaleealkkkkkkkkkkkkgkknkkrkakdk..KfG 223
                 a++k+ e+++k+ +lkk  K  q +k +        + +++ k k ++k ++ +++++++ ++ +++++      ++ ++++ +k++krk k +    G
  CCD23059.1  52 ANQKQEEKIQKEEQLKKDKKAQQLAKEEPT-----VIDNDVLKAKEEEKLAKAKAKADAELLKNKVDTEG-----EEYQSQALSKKDKRKLKKQlkSLG 140
                 444555555555555555444444443322.....22222333333222222211223333333333333.....222222223333444443300345 PP

        Ebp2 224 fGGkkrgsKsnda 236
                  + +k ++ +n +
  CCD23059.1 141 VSTEKNKTEENAN 153
                 5554444444433 PP

  == domain 2  score: -19.4 bits;  conditional E-value: 1
        Ebp2 126 qaakkaseearkqRelkkfgKqvqveklqeRqkeKketlekikklkkkrkkldfleeeeedefdvaleeal..............kkkkkkkkkk 206
                 ++a  ++++++ +++lk +g   +++k++e ++e  e +++ ++ + ++ +ld+l               +              ++++++++++
  CCD23059.1 121 SQALSKKDKRKLKKQLKSLGVSTEKNKTEENANEEEESEDEDEDEQPQQLDLDKL---------------ArsdsesdedeedeeQEQDQEQEQE 200
                 2223333333333334444444444444444444444444433333333333333...............2333222211111001111111111 PP

  == domain 3  score: 298.8 bits;  conditional E-value: 2.1e-93
        Ebp2   2 edeelsalekgelkegedvvpekkkkltinnkeaLkekleeikl..kklpwvetldltsk...paeiedvedDlkRElaFykqaleavkearkrlkklg 95 
                 ed++ls++   e ++++d+vp+  +kltinn++ +k++le+i+l  +k++++e++++ts+   +++i+d++dD++RE+aFykq+leav+ear++l+kl+
  CCD23059.1 210 EDVPLSDV---EFDSDADIVPH--HKLTINNTKSMKHALERIQLpwSKHSFQEHQSITSTtntDESIKDIYDDTEREVAFYKQSLEAVQEARTKLQKLK 303
                 67888888...899********..9**********************************99988999******************************** PP

        Ebp2  96 vpfkRPeDYFAEMvKsDehMekvkekLleeqaakkaseearkqRelkkfgKqvqveklqeRqkeKketlekikklkkkrkkldfleeeeedefdvalee 194
                 vpfkRP DYFAEMvK+DehM+k+k kL++e+++kka+e+arkqR+lkkfgKqvq+++lq+Rq eKketl+kik+lkkkrk+++     ++++f+v +ee
  CCD23059.1 304 VPFKRPLDYFAEMVKNDEHMDKIKGKLIKEASEKKAREDARKQRQLKKFGKQVQHATLQKRQLEKKETLDKIKSLKKKRKHDE----IDQSDFNVGIEE 398
                 *******************************************************************************9974....45689******* PP

        Ebp2 195 alkkkkkkkkkkkkgkknkkrkakdkKfGfGGkkrgsKsndaessadvsgfsakkkkkkkgkkkkkkRpgksrR 268
                 +   ++k++++++++++n kr+ak++K+G GG+kr++++nd essadvsgfs++k       k+k++RpgksrR
  CCD23059.1 399 EV--SEKSSSSRDRSRPNGKRAAKNAKYGQGGMKRFKRKNDSESSADVSGFSQRKM------KGKQSRPGKSRR 464
                 *9..6667777778999************************************994......6899*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3732  (0.208154); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                       252  (0.0140554); expected 17.9 (0.001)
Passed Fwd filter:                        74  (0.00412739); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.84u 0.39s 00:00:02.23 Elapsed: 00:00:00.59
# Mc/sec: 2375.29
//
Query:       CCD23060.1  [L=795]
Description: hypothetical protein NDAI_0B00260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-23   81.0   5.0    5.1e-23   81.0   5.0    2.6  3  SRI             SRI (Set2 Rpb1 interacting) domain
    6.6e-18   65.7   0.3    6.6e-18   65.7   0.3    4.3  3  SET             SET domain
    9.7e-16   57.2   0.5    2.9e-15   55.6   0.1    2.1  2  WW_1            WW domain
    8.7e-15   54.5  10.1    8.7e-15   54.5  10.1    2.0  2  AWS             AWS domain
  ------ inclusion threshold ------
      0.019   15.0   0.1      0.067   13.2   0.1    2.0  1  Med26           TFIIS helical bundle-like domain


Domain annotation for each model (and alignments):
>> SRI  SRI (Set2 Rpb1 interacting) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.2         5   1.8e+04      46      55 ..     276     286 ..     275     293 .. 0.63
   2 ?   -4.8   2.3         5   1.8e+04      41      53 ..     663     675 ..     653     685 .. 0.49
   3 !   81.0   5.0   1.4e-26   5.1e-23       2      85 .]     687     772 ..     686     772 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 5
         SRI  46 kElkkdksr.d 55 
                 kE+k++ ++ +
  CCD23060.1 276 KEMKRNGQKiE 286
                 89999876432 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 5
         SRI  41 kklvekElkkdks 53 
                 +   ekElk +++
  CCD23060.1 663 ELEREKELKLKRE 675
                 3334555555432 PP

  == domain 3  score: 81.0 bits;  conditional E-value: 1.4e-26
         SRI   2 kkqekkfkkelakvVvnvlnkYrkk..lkkedfKklakeltkklvekElkkdksrdppkelseekkkkikefvkeYmekfgakyke 85 
                 +++e+k+ +++a++V+n+++k   +  l+++++K+++++++k+l++kElk+d+ + pp+e ++ekk k+++fvk Ymekf++kyke
  CCD23060.1 687 ESNEHKWDNFFASFVPNLVRKNTGDveLSRDHIKECSRDIVKTLTSKELKRDDPKPPPEEATKEKKYKVNKFVKIYMEKFITKYKE 772
                 679**********************5566**********************99999****************************96 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.1       0.5   1.8e+03      97     137 ..      38      71 ..      11      93 .. 0.56
   2 !   65.7   0.3   1.8e-21   6.6e-18       1     169 []     116     222 ..     116     222 .. 0.90
   3 ?  -11.6  16.3         5   1.8e+04      69     137 ..     537     630 ..     467     739 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.5
                 XHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  97 kpeagafsaiagysidaralksgngagplarflNHsCdpNc 137
                 k++++++   ++++i+  + +  +++      +NH Cd + 
  CCD23060.1  38 KKLGNSK---NNDFIECDCYEDKDPQ----IHINHACDEDS 71 
                 3333333...4444444444455555....569****6643 PP

  == domain 2  score: 65.7 bits;  conditional E-value: 1.8e-21
                 SCEEEESSXBXTTXEEEEEE.ECCEECHHHHHHHHHH........HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHX CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeyp.eeiiltkdeadksele........aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasskae 90 
                 G+Gv+A+e+I+ g+fi ey  e  ++ + + ++++           y+++l+                                               
  CCD23060.1 116 GYGVRANENIENGQFIYEYIgE--VIDEIQFRERMIDydlkkfkhFYFMMLQ----------------------------------------------- 165
                 9***************999976..888888888888889999**99999999............................................... PP

                 TTTSXXXHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  91 sdlnaskpeagafsaiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                                 +g +id  a+ +g+ a    rf+NHsC+pN+++    v +  r+++fA r+I kGeE+t+dY+
  CCD23060.1 166 ----------------NGQFID--ATIKGSLA----RFCNHSCSPNAYVNKWEVAGKLRMGIFAKRKILKGEEITFDYN 222
                 ................4555**..77999999....***********7777777************************7 PP

  == domain 3  score: -11.6 bits;  conditional E-value: 5
                 HHHHHHHHHHHHHTHHHHHHHXTTTS...X.....................XXHCCCCC..HCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...x.....................xxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  69 kdqkqaekedtdaalkasskaesdln...a.....................skpeagaf..saiagysidaralksgngagplarflNHsCdpNc 137
                  + + ++++   + + + s++++++                           +++++++  s   ++s++ ++  +++   +    lNHs  +N+
  CCD23060.1 537 LESHWNHDKNKIDSNMMLSSKKRRRMerqLelskarayankkrreelekkiKGQTSSSTlnSPMENNSDNNNSSGKDDLNLNKSNSLNHS-HNNA 630
                 222222222222222222222222222220222223334445444442222222222223222222223333333333336666888888.4555 PP

>> WW_1  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.4     5e+03       8      14 ..     126     132 ..     125     132 .. 0.88
   2 !   55.6   0.1     8e-19   2.9e-15       1      27 []     464     490 ..     464     490 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
        WW_1   8 ENGrPmY 14 
                 ENG+ +Y
  CCD23060.1 126 ENGQFIY 132
                 9**9888 PP

  == domain 2  score: 55.6 bits;  conditional E-value: 8e-19
        WW_1   1 pGWEiihENGrPmYYNAqrqtKLhePP 27 
                 +GWEii+ENGr++++NA+r++KL+ePP
  CCD23060.1 464 LGWEIIFENGRRLFFNAEREIKLTEPP 490
                 7*************************9 PP

>> AWS  AWS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5  10.1   2.4e-18   8.7e-15       4      39 .]      64     102 ..      62     102 .. 0.96
   2 ?   -3.6   1.0       3.3   1.2e+04       4      12 ..     232     241 ..     231     241 .. 0.77

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 2.4e-18
         AWS   4 psgcgs..dCiNRmlliECteetC.pcGerCqNqrfqrk 39 
                 +++c++  dCiNR++liEC++++C +cG++CqNqrfq+k
  CCD23060.1  64 NHACDEdsDCINRLTLIECVNNLCySCGNDCQNQRFQKK 102
                 699*9999******************************8 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.3
         AWS   4 psgcgs.dCi 12 
                 ++ c++ +Ci
  CCD23060.1 232 KCYCDEpNCI 241
                 5779988998 PP

>> Med26  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.9e-05     0.067       2      50 ..     377     423 ..     376     424 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
                 HHHHS---.....HHHHHHSHHHHHHHHHH-TTS-HHHHHHHHHHHHHHH CS
       Med26   2 iLaqLeklpi.ttetLkstgIGkvVnalrkhkhetaevktlAksLvekWk 50 
                 iL+ L +lp  t++ + s++I k + +l  ++ e +++k+ +  L+ekW 
  CCD23060.1 377 ILEFLMRLPKsTKNGIVSSQIDKKISNL--SE-EIPHLKDQCDLLIEKWN 423
                 56666666664888**************..53.4***************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2207  (0.123097); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 5344.26
//
Query:       CCD23061.1  [L=242]
Description: hypothetical protein NDAI_0B00270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0013   18.8   1.2     0.0023   17.9   1.2    1.4  1  RIFIN           Rifin
  ------ inclusion threshold ------
      0.051   13.3   0.2        1.7    8.3   0.0    2.3  2  Tetraspanin     Tetraspanin family
      0.081   12.5   0.0        1.2    8.7   0.0    2.0  2  Virul_fac_BrkB  Virulence factor BrkB
       0.14   12.7   0.0       0.14   12.7   0.0    2.4  2  Arc_PepC_II     Archaeal Peptidase A24 C-terminus Type II
       0.32   11.3   3.1        2.9    8.2   1.3    2.6  2  Sigma_reg_N     Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> RIFIN  Rifin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.2   6.3e-07    0.0023     196     317 ..     114     236 ..      83     239 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.3e-07
       RIFIN 196 keeyeescllklkkskaaltsakekekkeasskekikkkvekive.kaekkaaaaaaeaaaeataeaekaetaaveattaslqtaiiasivaivvIvLi 293
                 +e+y++ ++lkl+k++   ++  + e+k+ +++  i+   +k+ + + +++ +++ ++ + e  +++ +  ++  +   +s+ t    +i ai+v v++
  CCD23061.1 114 NERYSKRSQLKLSKNTVREMTDLKAEEKSRTNNFDISIGNNKVENnNNNNNDDDEYKKMKYEYLKKVVEGIVDDHDILRQSYRTWNLRTIGAILVYVIV 212
                 4445555554444444443444444444444444444444444441455555666678888889999999999999*********************** PP

       RIFIN 294 mvIIYLiLRYrRKkKmkkKlqyik 317
                 +vI+ ++   +  + mk K q+ik
  CCD23061.1 213 IVIVVVLCIHHSSNEMKFKRQFIK 236
                 ***9999999999*********99 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00049       1.7      68     107 ..      56     143 ..      53     184 .. 0.66
   2 ?    3.0   0.1      0.02        73      85     103 ..     206     223 ..     188     241 .. 0.46

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00049
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HHH................................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................x RF
  Tetraspanin  68 cigalkenkcllltfsllllvlfllelaagilgfvfsdk................................................a 107
                  ci ++k ++ l+ +f + +++ f+  +++g+ ++ ++                                                  +
   CCD23061.1  56 CIESRKYSRLLIRSFWIGIVIPFIWIISLGVSLYLQYWLnhevhhdnlseeefptvfeneryskrsqlklskntvremtdlkaeeksR 143
                  999****************************666554333557777776666666666666665555555555555555555444432 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.02
                  XXXXXXXXXXXXXXXXX-- CS
                  xxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  85 lllvlfllelaagilgfvf 103
                  +l v +++ +++++l++++
   CCD23061.1 206 IL-VYVIVIVIVVVLCIHH 223
                  22.2222222223333333 PP

>> Virul_fac_BrkB  Virulence factor BrkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00034       1.2     104     140 ..      58      94 ..      53     112 .. 0.84
   2 ?    1.9   0.0     0.041   1.5e+02     112     129 ..     201     218 ..     175     237 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00034
  Virul_fac_BrkB 104 esrsflrkrllsllllllllvllllslvlsvflqsll 140
                     esr++ r +++s+ + +++++++++sl +s++lq  l
      CCD23061.1  58 ESRKYSRLLIRSFWIGIVIPFIWIISLGVSLYLQYWL 94 
                     57999999*************************9733 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.041
  Virul_fac_BrkB 112 rllsllllllllvlllls 129
                     r++  +l+ +++++++++
      CCD23061.1 201 RTIGAILVYVIVIVIVVV 218
                     222222222222222222 PP

>> Arc_PepC_II  Archaeal Peptidase A24 C-terminus Type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.9e-05      0.14      13      84 ..      15      87 ..      11      92 .. 0.69
   2 ?   -0.9   2.0      0.67   2.4e+03      47      64 ..     159     186 ..      97     216 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.9e-05
  Arc_PepC_II 13 kvkell.kkflflleefeekdgkikrkfisvekeldeelrkelkkykkkglieetvWvtygvPflipitaGfi 84
                 +++++  ++f+  +++ + k   +  +f + + e + e+++ +++ k ++l+  + W+   +Pf+  i +G+ 
   CCD23061.1 15 NISDYSqDDFVHHTNNNNSKVRYLIASFDEEKIEYKCECKSCIESRKYSRLLIRSFWIGIVIPFIWIISLGVS 87
                 5666666666655554444444455555555666667777778888888888889**************9975 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.67
  Arc_PepC_II  47 d..........eelrkelkkykkkglie 64 
                  +          ++++ e+ k + +g+++
   CCD23061.1 159 NnnnnndddeyKKMKYEYLKKVVEGIVD 186
                  0333333322233444444444445555 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.073   2.6e+02      12      41 ..      66      97 ..      58     113 .. 0.53
   2 ?    8.2   1.3   0.00081       2.9       4      48 ..     191     234 ..     188     241 .. 0.54

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.073
  Sigma_reg_N 12 ilrivlislivlllifvil.vvtllyl.aeke 41
                 ++r + i +++ ++ ++ l v+++l + +++e
   CCD23061.1 66 LIRSFWIGIVIPFIWIISLgVSLYLQYwLNHE 97
                 44444444444444444444444444454333 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00081
  Sigma_reg_N   4 lkkakrksilrivlislivlllifvilvvtllylaekegnkl.rev 48 
                  l+   r+  lr++ ++l+ +++i+++ v+ + +  +++++k+ r++
   CCD23061.1 191 LRQSYRTWNLRTIGAILVYVIVIVIVVVLCIHH--SSNEMKFkRQF 234
                  666667777888887776666655555444433..23333333555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2272  (0.126722); expected 358.6 (0.02)
Passed bias filter:                      752  (0.0419432); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 1809.77
//
Query:       CCD23062.1  [L=588]
Description: hypothetical protein NDAI_0B00280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-36  124.1   0.0    7.7e-30  104.1   0.0    2.2  2  Peptidase_M20  Peptidase family M20/M25/M40
    3.8e-13   49.3   0.0    9.6e-13   48.0   0.0    1.7  1  M20_dimer      Peptidase dimerisation domain


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0   8.6e-34   7.7e-30       1     148 [.     160     494 ..     160     508 .. 0.95
   2 !   17.9   0.0   2.2e-07     0.002     153     206 ..     520     582 ..     510     583 .. 0.78

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 8.6e-34
                    EEEEES-BSS.TTCG.GGSSS.TTSEE..ETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTT.THHHHHHHHHHTTTC CS
                    xxxxxxxxxx.xxxx.xxxxx.xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVp.eeet.dgwtt.pfslt..eedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggr.gGakallegleerek 90 
                    ll+sH+DvVp +e++ d+w++ pfs++   e+++++GrG++d+k+ ++a lea+++l  +g+ p++t+ l   +dEE+++  Gak+l++ l +r++
     CCD23062.1 160 LLMSHQDVVPvNEQSlDDWEYpPFSGHydPETDFIWGRGSNDCKNLLIAELEAVEQLLLDGFVPDRTVLLSMGFDEEANGlHGAKSLAQFLHKRYG 255
                    79*********99999************9999*********************************************8888********66699** PP

                    ESEEEEEEEESSSBTCHSTETEEEE....................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx....................................................................... RF
  Peptidase_M20  91 vdavfelhieepgileagklaigvv....................................................................... 115
                     d +++++ e++g+ e    + g++                                                                       
     CCD23062.1 256 NDSIYSIIDEGEGVVEV---DDGLYiaspvatekgyvdveftvvgkgghssippdhttigiasklisliedspypfefkndnpvygslvcaaehsk 348
                    ********999999994...44555668899***************************************************************** PP

                    ................................................................................................ CS
                    ................................................................................................ RF
  Peptidase_M20 116 ................................................................................................ 115
                                                                                                                    
     CCD23062.1 349 smskkdrkvilqatknkkkgkllskflesmkplrdlirstsavdiihggvkanalpedttflvnhridlhssvnktvekdlklareiaeeydygly 444
                    ************************************************************************************************ PP

                    .............EEEEEEEEEESHEEEC..CHHHHHHHHHHHHHHH..T CS
                    .............xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx..x RF
  Peptidase_M20 116 .............kvevelleggapvtln..dsplvkalaeaaeelf..g 148
                                  +e+++l+  +p++++  d+p++++la +++++f  g
     CCD23062.1 445 lddecivpetdlgYIELKPLRPLEPAPMSptDGPVWDLLAGTIQNVFenG 494
                    ************55********************************9633 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 2.2e-07
                    EEEES..SSBHTHHHHTTT.EEEEEEESS..G....GCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxx..xxxxxxxxxxxx.xxxxxxxxx..x....xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 153 livsg..pggtdarffagi.ptvmifgpg..s....glaHspnEyvdledlekgikvlarlle 206
                    +i++g  +g+td+++++ +  +++ f+ +  +    ++ Hs+nE+vd++ +  +i ++++++ 
     CCD23062.1 520 FITTGlfSGNTDTKYYWTLsENIYRFVASiiDddlaKTLHSVNEHVDMPGHLSAISFIYQYIT 582
                    56788889********88864554455222323589************************997 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   1.1e-16   9.6e-13       3     108 ..     285     439 ..     283     440 .. 0.93

  Alignments for each domain:
  == domain 1  score: 48.0 bits;  conditional E-value: 1.1e-16
                 B-EEEEEEEEEE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC...................................................... CS
   M20_dimer   3 hkGlaggkitvkgkagHsg.apgagaNAieklarllaeledeegdia..................................................ee 50 
                 +kG+++++ tv gk+gHs+ +p++    i ++++l++ +ed + + +                                                  + 
  CCD23062.1 285 EKGYVDVEFTVVGKGGHSSiPPDHT--TIGIASKLISLIEDSPYPFEfkndnpvygslvcaaehsksmskkdrkvilqatknkkkgkllskflesmkPL 381
                 89***********************..***************76666**************************************************** PP

                 .TCCTCCCCCEECCE-CCCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCSTT CS
   M20_dimer  51 rslprttlnvtgiegGsaknvipdeaeakidiRllpgedpeevleeieeilekeaped 108
                 r+l r+t +v +i+gG ++n++p+ +++ ++ R+  ++++ +  e+  +++++ a+e+
  CCD23062.1 382 RDLIRSTSAVDIIHGGVKANALPEDTTFLVNHRIDLHSSVNKTVEKDLKLAREIAEEY 439
                 *********************************9999888887777666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3993.77
//
Query:       CCD23063.1  [L=117]
Description: hypothetical protein NDAI_0B00290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-28   98.4   0.0      3e-28   98.3   0.0    1.0  1  Rep_fac-A_3  Replication factor A protein 3


Domain annotation for each model (and alignments):
>> Rep_fac-A_3  Replication factor A protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.0   1.7e-32     3e-28       1     105 []       1     117 []       1     117 [] 0.95

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 1.7e-32
                  GGS--EEE-GGGGGGGTTSEEEEEEEEEEETTSSEEEEE-TTS-E.....EEEEESS-.-SS---SEEEEEEEE-T..TS-E.EEEEEEE-...---- CS
  Rep_fac-A_3   1 MdsetprvnpsmLsqfvgrtvrivgkvesvpsgktlilqstdggs.....vtvrlsed.stleiskwvEvvGkvsd..dlgi.rldsvvef...gedl 86 
                  M+setpr +p+++++ +++++ri+++v+s+p+++tlil+s+ +g+      +vrls+  ++++i++w+E+v++++d  d g+ +ldsv ++   +e++
   CCD23063.1   1 MASETPRLDPTEIANSNASVFRIIAQVKSQPTESTLILSSPSKGNemitlSNVRLSMTrTPFQIDSWYEFVCRANDtgDVGFlILDSVPCIlkeNESI 98 
                  99*****************************************99****988888875268*****************************998777** PP

                  -HHHHHHHHHHHHHSGGGS CS
  Rep_fac-A_3  87 Dldlynklvqlthkfpely 105
                  ++d++++l+qlt+kfpe+y
   CCD23063.1  99 SIDGIVALQQLTKKFPEIY 117
                  ******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       275  (0.0153383); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 863.84
//
Query:       CCD23064.1  [L=285]
Description: hypothetical protein NDAI_0B00300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-47  158.7   9.6    5.4e-47  158.7   9.6    2.2  3  KRE9          Yeast cell wall synthesis protein KRE9/KNH1
    1.7e-14   54.4   1.6    1.7e-14   54.4   1.6    2.5  3  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc


Domain annotation for each model (and alignments):
>> KRE9  Yeast cell wall synthesis protein KRE9/KNH1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       1.5   1.3e+04      52      58 ..      79      85 ..      56     104 .. 0.48
   2 ?   -1.7   0.6      0.57   5.1e+03      46      61 ..     153     170 ..     129     179 .. 0.60
   3 !  158.7   9.6   6.1e-51   5.4e-47       1     101 [.     181     282 ..     181     283 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.5
        KRE9 52 sleqltT 58
                +++ ++T
  CCD23064.1 79 NIQSIAT 85
                2222222 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.57
        KRE9  46 ystlkk..sleqltTiTp 61 
                   t+++  +++ +tT T+
  CCD23064.1 153 SDTVQPvpQTSIQTTTTQ 170
                 334443112233444444 PP

  == domain 3  score: 158.7 bits;  conditional E-value: 6.1e-51
        KRE9   1 dsksftvpYtkQtgktrfAPmQtqPgtkvta.ttwsrrfptsavtyystlkksleqltTiTpgwsytltsavNyatpapfpsenGgwydpskrlslstr 98 
                 ds+sftvpYtkQtg++rfAPmQtqP+tk+++ ++w+r+f+tsavt+yst++ksl+q+tTiTpgwsyt+ts+vNya+pa fps+nG+ y+pskrl+ls+r
  CCD23064.1 181 DSRSFTVPYTKQTGISRFAPMQTQPKTKISSqKSWTRKFQTSAVTFYSTMRKSLQQMTTITPGWSYTITSDVNYASPALFPSDNGAGYNPSKRLTLSVR 279
                 79***************************86489***************************************************************** PP

        KRE9  99 kln 101
                 k+n
  CCD23064.1 280 KIN 282
                 *99 PP

>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   1.6   1.8e-18   1.7e-14       2      91 ..      33     139 ..      32     141 .. 0.91
   2 ?   -1.8   0.3      0.61   5.4e+03      52      52 ..     172     172 ..     146     196 .. 0.52
   3 ?   -0.3   0.2      0.21   1.9e+03      27      47 ..     228     248 ..     199     267 .. 0.50

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.8e-18
  GPI-anchored   2 sPssgevvtag...kpvtitWkdsgtdp.....gtvtlvLcagssnnlksvktiasgiknsd.......gsytwtvpaslesggaYflqiv.sesne 82 
                   sP+ g+ +t++    +++i+W d+++ p     + +t++Lc+g++nn++s++t+a+++++++        sy+++  ++l  +g+Yf+qi+   +++
    CCD23064.1  33 SPTEGAAFTSSggsVSLKIEWMDNTAYPtldkiSFYTFSLCTGPNNNIQSIATLATQVSSDAitvddnvYSYSFDLADTLTGNGQYFIQIYaWVNDQ 129
                   7999999999877677*******9966677788**************************9889****999*********************966666 PP

  GPI-anchored  83 .giynySdrF 91 
                    ++++y++rF
    CCD23064.1 130 gSTIHYTPRF 139
                   7********* PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.61
  GPI-anchored  52 k 52 
                   +
    CCD23064.1 172 N 172
                   1 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.21
  GPI-anchored  27 gtvtlvLcagssnnlksvkti 47 
                   +t+  +L ++++ ++    ti
    CCD23064.1 228 STMRKSLQQMTTITPGWSYTI 248
                   333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.52
# Mc/sec: 1664.71
//
Query:       CCD23065.1  [L=1006]
Description: hypothetical protein NDAI_0B00310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-28   97.4   1.5    1.2e-27   96.0   0.3    2.4  2  SWIRM            SWIRM domain
    5.9e-19   67.8  10.8    6.1e-19   67.8   9.1    2.0  2  SWIRM-assoc_1    SWIRM-associated region 1
    2.5e-11   43.6   0.0    7.1e-11   42.1   0.0    1.9  1  Myb_DNA-binding  Myb-like DNA-binding domain
    7.1e-07   29.4   0.2    2.1e-06   27.8   0.2    1.9  1  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.3   2.8e-31   1.2e-27       1      89 []     437     522 ..     437     522 .. 0.98
   2 ?   -1.7   0.0      0.85   3.8e+03      34      76 ..     849     888 ..     828     894 .. 0.72

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 2.8e-31
       SWIRM   1 ps.sewFdpdslhpiEkellselfngk..dktpeeYlkiRnkiialyrenpkeyltvteaqkalkrrrltgidvnllsrihefLerwGlINf 89 
                 ps s+wFd +++h+iEk++l+e+f+++  +ktp+ Y+++Rn+++++yr np+ey++vt+a     rr+l g d++++ r+h+fL +wG+IN+
  CCD23065.1 437 PSySKWFDLNKIHKIEKQSLPEFFTNRiaSKTPQIYVRYRNFMVNAYRLNPTEYFSVTAA-----RRNLSG-DAAVIFRLHRFLMKWGIINY 522
                 6789********************999999******************************.....9***9*.*******************8 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.85
       SWIRM  34 lkiRnkiialyrenpkeyltvteaqkalkrrrltgidvnllsr 76 
                 l iR  i+a+  e+  + l+ + +q +++  +l++ ++nll++
  CCD23065.1 849 LGIRSNIFATNEERKLVTLSNQLVQVQMQ--KLES-KFNLLKK 888
                 67999999999998777777777755555..6666.6776665 PP

>> SWIRM-assoc_1  SWIRM-associated region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.7   1.2e+04      16      29 ..     687     700 ..     685     702 .. 0.84
   2 !   67.8   9.1   1.4e-22   6.1e-19       1      78 [.     843     920 ..     843     926 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.7
  SWIRM-assoc_1  16 sqeereiqrlvaql 29 
                    s++er+iq+l +++
     CCD23065.1 687 SWTERDIQNLLKAI 700
                    6899*****99876 PP

  == domain 2  score: 67.8 bits;  conditional E-value: 1.4e-22
  SWIRM-assoc_1   1 siALaaaAakAkvlasqeereiqrlvaqlvetqlkKlelKLkqfeelEklleaerrelekqrqqLlleRlalkkevlk 78 
                    ++A+aa++ +++++a++eer++  l +qlv++q++Kle K++ +++ Ek le+e++ +ekq+++Ll++Rl++ ++++ 
     CCD23065.1 843 EVAMAALGIRSNIFATNEERKLVTLSNQLVQVQMQKLESKFNLLKKFEKSLELEKKIIEKQQEDLLIQRLSFIRNSNI 920
                    58**********************************************************************998765 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   1.6e-14   7.1e-11       2      45 ..     686     729 ..     685     730 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 1.6e-14
                      SSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45 
                      ++Wte + ++Ll+a++++G++W kIa+ +g++++++c+++++++
       CCD23065.1 686 NSWTERDIQNLLKAINEFGSNWYKIAKSIGNKSPEECILKFLQL 729
                      69***************************************986 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.2   4.8e-10   2.1e-06       1      44 [.     688     730 ..     688     747 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 4.8e-10
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLr 44 
                     Wte + + Llk   ++g++W +Ia+ +++++p++c  ++++ L+
      CCD23065.1 688 WTERDIQNLLKAINEFGSNWYKIAKSIGNKSPEECILKFLQ-LP 730
                     ***************************88***********9.74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1006 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2257  (0.125885); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.89u 0.33s 00:00:01.22 Elapsed: 00:00:00.55
# Mc/sec: 5480.86
//
Query:       CCD23066.1  [L=184]
Description: hypothetical protein NDAI_0B00320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-38  129.3   0.2    5.5e-38  129.3   0.2    1.6  2  Ribosomal_L22  Ribosomal protein L22p/L17e
  ------ inclusion threshold ------
      0.069   11.3   0.2      0.072   11.3   0.2    1.0  1  CRT10          CRT10
      0.078   13.1   0.1         25    5.1   0.0    2.7  3  Fis1_TPR_C     Fis1 C-terminal tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Ribosomal_L22  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   0.2   9.3e-42   5.5e-38       1     103 []      17     151 ..      17     151 .. 0.98
   2 ?   -1.3   0.1      0.43   2.6e+03      75      89 ..     163     177 ..     154     182 .. 0.70

  Alignments for each domain:
  == domain 1  score: 129.3 bits;  conditional E-value: 9.3e-42
                    EEEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHT..-SST..............................THHHHHHHHHHHHHHHH..HT-GGGE CS
  Ribosomal_L22   1 akgsnlrvsfkklrevarlIrgmkveeAlkyLkf..skkk..............................aakfvlklLknaeanaelkgldvdsl 64 
                    a+gs+lrvsfk++re+a+++ g ++++A kyL++  ++++                              + kfv  lL+na anae kgld+++l
     CCD23066.1  17 ARGSYLRVSFKNTRETAQAVSGWELTKAQKYLDQvlEHQRaipfrrfnssigrtaqgkefgvtkarwpakSVKFVQGLLQNAAANAEAKGLDATKL 112
                    799*******************************9877779******************************************************* PP

                    EEEEEEEEEEEEEEEEEEESTTEEEEEEEEEEEEEEEEE CS
  Ribosomal_L22  65 vIeeiqvnkgpklkrrtyrArGrinpirkspchievvlk 103
                    ++++iqvn++pk++rrtyrA+Grin++++sp+hie+v++
     CCD23066.1 113 YVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151
                    ************************************995 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.43
                    EEEEEEEEESTTEEE CS
  Ribosomal_L22  75 pklkrrtyrArGrin 89 
                    +k+ r+  r rGri 
     CCD23066.1 163 KKVVRLSSRQRGRIA 177
                    566788889999986 PP

>> CRT10  CRT10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   1.2e-05     0.072     417     501 ..      27     118 ..       6     175 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.2e-05
       CRT10 417 kkvkekesswqeesglklqeekdykekklnsqdleesleierkv..........sdnievladlsvliskdkteklkqieilelelestklsdid 501
                 k+++e++   q  sg +l++ ++y+++ l+ q  +  +++++++            +  + a++  ++++  ++   ++e   l++++  +s i+
  CCD23066.1  27 KNTRETA---QAVSGWELTKAQKYLDQVLEHQRAIPFRRFNSSIgrtaqgkefgVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQ 118
                 3455555...99999**************************************977777777777777777777777777777777766666554 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0044        26      16      31 ..      40      55 ..      39      58 .. 0.89
   2 ?    5.1   0.0    0.0041        25      19      41 ..      86     108 ..      77     110 .. 0.90
   3 ?   -3.8   0.0       2.3   1.4e+04      10      20 ..     132     142 ..     132     146 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0044
                -HHHHHHHHHHHHHHT CS
  Fis1_TPR_C 16 eYseArryvdalLeiE 31
                e ++A +y+d++Le++
  CCD23066.1 40 ELTKAQKYLDQVLEHQ 55
                6799**********98 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0041
                 HHHHHHHHHHHHTTS-HHHHHHH CS
  Fis1_TPR_C  19 eArryvdalLeiEPenrQaqsLk 41 
                 ++ ++v+ lL+    n  a+ L 
  CCD23066.1  86 KSVKFVQGLLQNAAANAEAKGLD 108
                 789*****************996 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2.3
                 HHHHHT-HHHH CS
  Fis1_TPR_C  10 GhyklgeYseA 20 
                 +h ++ +Y+ +
  CCD23066.1 132 AHGRINKYESS 142
                 67899999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1291.84
//
Query:       CCD23067.1  [L=288]
Description: hypothetical protein NDAI_0B00330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-52  177.7   1.9    5.8e-52  177.1   1.9    1.2  1  ATG27     Autophagy-related protein 27
    4.7e-05   23.7   1.4    8.7e-05   22.8   1.4    1.4  1  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-
      0.006   16.9   0.0      0.011   16.1   0.0    1.3  1  Orf78     Orf78 (ac78)


Domain annotation for each model (and alignments):
>> ATG27  Autophagy-related protein 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.1   1.9   9.7e-56   5.8e-52       4     264 .]      12     284 ..       8     284 .. 0.91

  Alignments for each domain:
  == domain 1  score: 177.1 bits;  conditional E-value: 9.7e-56
       ATG27   4 llallaaasaa..ldCskivvdkglkkydlsklkgphsvstseetppsktnttytldiCeplkkkkdvkkedqCpkgtrvCgitrvikkdekdeitqvi 100
                 l ++++ +  +  ++Cs   +d+ lk+y+++++  +   + +++tppskt++++++++Ce+ +++ +v+ +++C ++++ Cg+ +v+ + ++  +tqvi
  CCD23067.1  12 LSLVFSPSL-VssIQCS---KDAVLKRYQINEF--ASLGEIESDTPPSKTTEKWWINPCEENNEA-NVNIPSDCYHDDVSCGLVEVLLPGKEALTTQVI 103
                 333333333.336****...899**********..88889999****************997765.789********************88888***** PP

       ATG27 101 piggksldpkvtrlkesdekeglrlelkggkygkkkqkaiieflCd....ekslkfksydeeeeeekdvlrlewktkyACekaekdkkdsskkkek... 192
                 ++ +k+l++ ++++     +++l ++lkg+k+g+++ +a++ef Cd    +++l+ +s+++        ++l ++++++C ++++d+++++++++k   
  CCD23067.1 104 NF-SKNLKYVAEEF-----DDKLLITLKGTKWGSNTFDAEFEFSCDpklkSDTLVETSWQRGL------IKLYVNGPSGCLRDKRDNDNDDNNNNKdkd 190
                 **.**********9.....478***********************777768889999999876......*****************999998888899* PP

       ATG27 193 .....................sgwGfFtwlfiilflataaYlifgswlNynryGargwDllph.....gdtirdlPyllkDvvrkvlgtvqgsgsrgG 264
                                      +g+++F+wl+i+ +++t++Yl++ s++N++  G+++ D++ +     ++++++lP++ k+v++kvlg  ++ ++rgG
  CCD23067.1 191 ddnnrkdsdkkngnseknkrnGGISWFSWLLIYSLMFTLIYLMVVSYMNTR--GGSFDDFRTEfvtrsTQLLTSLPEFTKEVINKVLG--RNDSQRGG 284
                 ***************************************************..***********************************..58899998 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   1.4   1.4e-08   8.7e-05      29      82 ..     174     227 ..     168     234 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.4e-08
     PBP1_TM  29 rrrdddyddeyddeedDdddddeeeevprkgkkkkpprkkrr....wlwlliklflvl 82 
                  +rd+d dd  +++++D+ddd++ +++ +k+ ++  +++kr     w+++l+   l++
  CCD23067.1 174 DKRDNDNDD--NNNNKDKDDDNNRKDSDKKNGNS--EKNKRNggisWFSWLLIYSLMF 227
                 567888888..77788888888888888884333..4444444556988887666655 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.8e-06     0.011      29      85 ..     178     237 ..     162     241 .. 0.48

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.8e-06
       Orf78  29 ddndkaenkkekksaaeknditekesnaaekaqalnillisllavvcv...lvllyviyY 85 
                 +dnd+++n+k+k + ++++d+++k+ n+++++ +  i ++s l + ++   l+ l+v++Y
  CCD23067.1 178 NDNDDNNNNKDKDDDNNRKDSDKKNGNSEKNKRNGGISWFSWLLIYSLmftLIYLMVVSY 237
                 233333333333333444444444444445555555555555444433000344455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1113  (0.0620782); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 2003.42
//
Query:       CCD23068.1  [L=118]
Description: hypothetical protein NDAI_0B00340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-11   44.1  12.8    2.1e-11   43.7  12.8    1.2  1  Prefoldin_2  Prefoldin subunit
  ------ inclusion threshold ------
      0.015   14.7   0.5      0.019   14.4   0.5    1.2  1  DUF4568      Domain of unknown function (DUF4568)
      0.091   13.3   8.3       0.12   12.9   8.3    1.2  1  APG6_N       Apg6 coiled-coil region
        1.3    9.7  10.1        8.8    7.0   2.7    2.7  3  SlyX         SlyX


Domain annotation for each model (and alignments):
>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7  12.8   4.6e-15   2.1e-11       1     104 [.       8     114 ..       8     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 4.6e-15
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.... CS
  Prefoldin_2   1 qelinkfqqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekelee.... 94 
                  qe+   ++ ++ ql+ + qq+  le+q k ++ + +el++ ++d +v++++G+++v+q+k+e +++L+ +++ l+ + k+le ++ +l++++e+    
   CCD23068.1   8 QEMTTTLRTSKGQLDVVNQQLSHLERQEKIAQVTTKELDSYPND-DVWRSCGKAFVLQKKNEYIKDLNHDENLLKDQKKALEIKQNYLKTTVEKtvdg 104
                  788999999***********************************.****************************************9998888772222 PP

                  HHHHHHCCTS CS
  Prefoldin_2  95 lkeelqkklq 104
                  lk++l++++q
   CCD23068.1 105 LKAVLNQQQQ 114
                  5555555555 PP

>> DUF4568  Domain of unknown function (DUF4568)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.5   4.1e-06     0.019     123     181 ..      29      88 ..      21     112 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.1e-06
     DUF4568 123 kvvkrqqsfksikeapldlrswynrwricgeghlllkw.qqlqalhqeeplaeekpaslk 181
                   + rq+++ +++ + ld+    + wr cg+   l k    ++ l  +e+l ++++++l+
  CCD23068.1  29 SHLERQEKIAQVTTKELDSYPNDDVWRSCGKAFVLQKKnEYIKDLNHDENLLKDQKKALE 88 
                 5679****************************999876156899*****99999988764 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   8.3   2.7e-05      0.12       8     101 ..       4     115 ..       3     118 .] 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.7e-05
      APG6_N   8 dlLleeldkqleqaekerdaYeeflkklkkekkeeek..................qdeeleeleeeleklekeeeelleeLkelekereeleaelaale 88 
                 ++L++e+++ l++++ + d  ++ l++l++++k ++                   +   l++ +e +++l+ +e+ l  + k+le ++  l+  +++  
  CCD23068.1   4 SSLIQEMTTTLRTSKGQLDVVNQQLSHLERQEKIAQVttkeldsypnddvwrscgKAFVLQKKNEYIKDLNHDENLLKDQKKALEIKQNYLKTTVEKTV 102
                 589****************************88865599999999999999998877777888888*********************999999999988 PP

      APG6_N  89 eelealeeeeerf 101
                   l+a+ +++++ 
  CCD23068.1 103 DGLKAVLNQQQQQ 115
                 8888776666665 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.5    0.0025        11      18      52 ..       6      40 ..       3      52 .. 0.77
   2 ?    0.1   0.1      0.28   1.3e+03      33      52 ..      70      89 ..      62      97 .. 0.59
   3 ?    7.0   2.7     0.002       8.8       7      32 ..      86     115 ..      80     118 .] 0.73

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0025
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXX CS
        SlyX 18 tieeLndvvaeqqqqidrlqrqlrllaerlkelee 52
                +i+e+  ++     q+d   +ql +l+++ k ++ 
  CCD23068.1  6 LIQEMTTTLRTSKGQLDVVNQQLSHLERQEKIAQV 40
                68889999999999999999999999888765554 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.28
                HHHHHHHHHHHHHT-XXXXX CS
        SlyX 33 idrlqrqlrllaerlkelee 52
                i+ l +  +ll+++ k+le 
  CCD23068.1 70 IKDLNHDENLLKDQKKALEI 89
                55555556666666655554 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.002
                 HHHHHHHHH....HHHHHHHHHHHHHHHHH CS
        SlyX   7 eLEiklafq....edtieeLndvvaeqqqq 32 
                 +LEik  ++    e+t++ L +v+ +qqqq
  CCD23068.1  86 ALEIKQNYLkttvEKTVDGLKAVLNQQQQQ 115
                 5677766652222788899*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2008  (0.111997); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 913.77
//
Query:       CCD23069.1  [L=334]
Description: hypothetical protein NDAI_0B00350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-30  105.6   0.0    3.7e-30  104.6   0.0    1.5  1  ATP12     ATP12 chaperone protein


Domain annotation for each model (and alignments):
>> ATP12  ATP12 chaperone protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.0   2.1e-34   3.7e-30       2     128 ..      56     195 ..      55     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 2.1e-34
                 ---S-EEEEE...TTSEEEEETTEE-BETTSEB--BSSHH..HHHHHHHHHH....T-SSB--GGG-HHHHHHHHHHH.TT..C...........CCHH CS
       ATP12   2 RFwkevsveekekdggyqvlLDgrplrtptknilavpsskklLAeaiaaEWdl..saqqalikphllpltslasraiDleaeda...........ttre 87 
                 RFw++v++++k  ++++ ++LD++p++tp++  l+v+++++lLA+++ +EW++  + +  + ++++lpltsl+ r+iDle++ a            +r+
  CCD23069.1  56 RFWETVTLDDKCIENKILIKLDSKPIKTPSGFDLSVDKNRPLLAYLLRQEWATlpTVSM-K-NTDHLPLTSLVFRCIDLETAVAkgdkdlitkinADRS 152
                 9*******8877789*************************************8753333.3.5799************99977799************* PP

                 HHHHHHHHHHHC-CCCEE...--SSHHHHHHHHHHHHHHHHHH CS
       ATP12  88 aivktllryldtDtllcr..eaeepesLrerqeetwepilawl 128
                  i ++llryldtDtll++  ++e +++Lr++q+e + pi+a +
  CCD23069.1 153 LINEQLLRYLDTDTLLVFspRNEFEGALRSKQDELYLPIIAKI 195
                 ******************9988******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2586.14
//
Query:       CCD23070.1  [L=424]
Description: hypothetical protein NDAI_0B00360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.6e-58  196.8   0.1    6.3e-58  196.3   0.1    1.2  1  Glyco_transf_34  galactosyl transferase GMA12/MNN10 family


Domain annotation for each model (and alignments):
>> Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.3   0.1   3.5e-62   6.3e-58       2     239 .]     169     411 ..     168     411 .. 0.94

  Alignments for each domain:
  == domain 1  score: 196.3 bits;  conditional E-value: 3.5e-62
  Glyco_transf_34   2 epeivlllvsnekkcenssgdhelllkvikNrvdYaekhgyeifykkvsalla....eemnsvWaklp..airaamkkyPeaewiWwlDqdAli 89 
                      epeiv++++++++++e      e + k+++NrvdYa+kh y++++++++++l+    +++ +++ k    ++raam+++P a++i+++D+d li
       CCD23070.1 169 EPEIVIVTLIDFENYE-----LESIVKIVQNRVDYAQKHKYGVYIRWAQEFLPlvenQNVLESYDKFKpiVMRAAMHAFPRAKYIFYVDKDSLI 257
                      79*************7.....77899*************************99986666667788764226699******************** PP

  Glyco_transf_34  90 mnmdlsleehvlkperLeelllkntpvvplrryketnlvedgedvlviisqdwnglnagsflirnsewsklllDlwadpllrekkkavtesdeq 183
                      mn dlsl+  +l+p+ L+  llkn+pv p++++ ++n+++  ++ ++i +++ + l+++sf+i n++++k +l+++++pl+ + ++a    +  
       CCD23070.1 258 MNLDLSLQRNLLEPSVLDLGLLKNVPVIPQSNIRTYNHFNPEDASIIIPQSSDGVLDSSSFIIANDQFGKVFLEYLNNPLIVNFDWA----NLH 347
                      **********************************999999999999999999999********************************....999 PP

  Glyco_transf_34 184 saleyllekhpevlskvglveqkvinsydegeke........lgykegdlvvhfagCkvankca 239
                      +a+++ l++hp++l+k+glv +k+++s++++ ++        ++y  gdl+++++gCk++n+ca
       CCD23070.1 348 AAMGHVLQWHPTLLKKTGLVIPKLLASQYDSTRSidkassdsYHYTTGDLIASLKGCKERNSCA 411
                      ***************************99999999**************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3273.97
//
Query:       CCD23071.1  [L=136]
Description: hypothetical protein NDAI_0B00370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-43  145.2   0.3    7.9e-43  144.9   0.3    1.1  1  Gon7         Gon7 family
  ------ inclusion threshold ------
      0.047   13.5   0.0        0.1   12.4   0.0    1.6  1  NUC153       NUC153 domain
      0.073   13.1   2.4        1.2    9.2   0.8    2.3  2  Spore_Cse60  Sporulation protein Cse60


Domain annotation for each model (and alignments):
>> Gon7  Gon7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.3   1.3e-46   7.9e-43       1     108 []       5     119 ..       5     119 .. 0.97

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 1.3e-46
        Gon7   1 ltAtYtapdieekefevdkekpryqttngsttgpSdyVlkaGqvdrdkpsepkkead......aelteLseLRaqltgLQddiNefLTermeeakkkkk 93 
                 +tA+Y++pdi+e +f++d +++ryqttng+ttgpS++Vl+aGq+drd+ps+pk  +        ++teLs+LR++ltgLQddiN+fLTe+me+akkkk 
  CCD23071.1   5 ITAKYSSPDIPELHFTIDVNDKRYQTTNGMTTGPSEHVLNAGQIDRDRPSDPKLLSGsssdvePHYTELSKLRMHLTGLQDDINIFLTEQMELAKKKKI 103
                 69***************************************************98888999999*********************************** PP

        Gon7  94 kvdd.keeerieeein 108
                 k+++ +ee+ri+eein
  CCD23071.1 104 KLHSeEEEKRIDEEIN 119
                 **99889999***997 PP

>> NUC153  NUC153 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.7e-05       0.1      12      29 .]      18      35 ..      18      35 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
      NUC153 12 dFaIDptspeFkktnpmk 29
                +F ID ++ +++ tn+m+
  CCD23071.1 18 HFTIDVNDKRYQTTNGMT 35
                8****************7 PP

>> Spore_Cse60  Sporulation protein Cse60
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.015        92      11      24 ..      79      92 ..      77      97 .. 0.81
   2 ?    9.2   0.8   0.00021       1.2       3      25 ..     102     124 ..     100     130 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.015
  Spore_Cse60 11 HEkDLekevneFLk 24
                 H   L++++n FL 
   CCD23071.1 79 HLTGLQDDINIFLT 92
                 66679*******97 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00021
  Spore_Cse60   3 kvkvFDeeHEkDLekevneFLkk 25 
                  k+k+  ee Ek +++e+ne L+ 
   CCD23071.1 102 KIKLHSEEEEKRIDEEINELLDG 124
                  899*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       895  (0.0499191); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1093.95
//
Query:       CCD23072.1  [L=238]
Description: hypothetical protein NDAI_0B00380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1786.98
//
Query:       CCD23073.1  [L=904]
Description: hypothetical protein NDAI_0B00390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-64  217.1   0.1    9.2e-64  215.4   0.1    1.9  1  muHD      Muniscin C-terminal mu homology domain
     0.0014   17.7   1.1     0.0014   17.7   1.1    2.2  2  DUF2397   Protein of unknown function (DUF2397)


Domain annotation for each model (and alignments):
>> muHD  Muniscin C-terminal mu homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.4   0.1     1e-67   9.2e-64       1     219 [.     668     899 ..     668     903 .. 0.94

  Alignments for each domain:
  == domain 1  score: 215.4 bits;  conditional E-value: 1e-67
                 -EEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEE--SSS-----SEEEEEEETGGGEEEEEE-TTTE....EEEETTE....EEE-TTTTBT-E.EEEE CS
        muHD   1 pgLnasiiEtvnAwFkdgevtkskvvGelaLaynaspaasltlpdkltvrlenfeklekvapNpafvte..ekqkdge....ykinlsalarktktval 93 
                 +gLnasi+E++nA Fk+g +++ +++Ge+aL+y ++++++++lp  ++++++n  +++ +++N+af+++  e  +++e    +kin+++++++t ++al
  CCD23073.1 668 FGLNASIAEVINASFKEGIIQDCQLIGEIALTYIPNSIMNTPLPIGINLKINNSDNFDAMILNQAFMEKiqE--SNEEcketFKINPEFINSRT-LGAL 763
                 69***************************************99************************99542..44333445************.**** PP

                 EEEEES......---SEEEEEEEEE-SSEEEEEEEEEE-TT..TT--E.EEEEEEEEEEEB-SS..........-EEEEEESSS--B-SSS-EEEEE-S CS
        muHD  94 kYqvhadpskasascPlilkpvWkleehqasviltyslnps..laiasavtLenlvlvvnldgs..........ratsvqskPqatfskeksrvtWklp 180
                 kY+++ +++     +P++++pvWk+e+hqasv+lt++++p    +i s + Le+lv++v+++g+          +ats++skPq++f+kek+r+tW+++
  CCD23073.1 764 KYSIKQNEK---VIPPITIQPVWKFENHQASVVLTIKISPMvpDEIDS-LILEDLVVFVSIEGAngasddnvdlEATSALSKPQGSFNKEKRRITWRFK 858
                 ******777...89**************************98667776.9************************************************* PP

                 S.EEEETT---EEEEEEEEESS---.-SS-EEEEEEE---S CS
        muHD 181 e.leltsdsdegkllarfsteesae.kpgkVevkFeveega 219
                 e l+l+++s +++l+arf t++ a  +p +V +kF++++++
  CCD23073.1 859 EpLVLKRNSTGERLIARFLTNGLAReSPRGVITKFTIRSNQ 899
                 *********99***********9999***********9665 PP

>> DUF2397  Protein of unknown function (DUF2397)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   1.1   1.5e-07    0.0014     101     247 ..     121     282 ..     118     294 .. 0.91
   2 ?   -0.7   6.4     0.055   4.9e+02     339     407 ..     556     624 ..     547     641 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.5e-07
     DUF2397 101 veeleealgeggslervlleriaarLraLaelaeedeaddevaellrelferfekLaenaadFlasLqrvlae............edmdteaflayKea 187
                 ++el++ l+++ + + vl +++ ++L++  e +++ ++ ++++++l++++++ +  +++++d + +Lq++ ++            e++d       K+ 
  CCD23073.1 121 IAELKNDLNSTLEFKNVLSKQVVKNLKDSTENNSSWNESKKLHSKLTQIAASIDHYSKSSNDSQNNLQQANQQwdqevpylfelfENIDYNRLQLLKDC 219
                 6788999999999999*******************99999*********************************************************** PP

     DUF2397 188 LidYlqefvadLqrrsarIatlLrel....eeagverllaraaereariprleeertveeller 247
                 L++Y   f + L +++++ +t++ ++    +e++++r+++ a++++ ++ ++++++ v+e+++r
  CCD23073.1 220 LLTYQTGFSDYLLNTTNQCETVMTKFlefdPEKEIDRFAQEATNYDFKPLLDHNKN-VPEQQQR 282
                 *************************999999***************9876555555.5555554 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.055
     DUF2397 339 aeedeetvpantswwdappvevslrlrergrrerrgrpsrvadrsaerarlaeealrereaeaaalaeL 407
                 +++++++++++++  d +p+ ++       r+ + +r s++  ++++++++++++++++ a + + ++L
  CCD23073.1 556 QQQQQQQQQQQQHYVDNKPMHIHAPAVPPSRKLSQSRNSQIYANQQQQQQQQQQQQQQQPASSTIQSKL 624
                 457889999999**************9999999999*********999999999999998777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (904 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3411  (0.19025); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.40u 0.35s 00:00:01.75 Elapsed: 00:00:00.54
# Mc/sec: 5025.96
//
Query:       CCD23074.1  [L=746]
Description: hypothetical protein NDAI_0B00400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-48  163.9   1.5      1e-47  162.7   1.5    1.6  1  Pkinase      Protein kinase domain
    3.4e-27   95.4   0.1      7e-27   94.3   0.1    1.5  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.022   14.1   0.0       0.11   11.8   0.0    1.9  2  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.7   1.5   1.7e-51     1e-47       2     261 ..     396     717 ..     395     719 .. 0.88

  Alignments for each domain:
  == domain 1  score: 162.7 bits;  conditional E-value: 1.7e-51
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS........CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.. CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk........hpnivrlyevfeekdelylvleyveggeladlle.. 90 
                 ++++k+G+G+f++Vy+++ + t+k++AvK ++ +k + +  +k+l+Eikil +++         ++++ ++++++ ++++y++++y e+g+l+++l+  
  CCD23074.1 396 SNVHKIGSGEFSSVYQVTFTMTNKKYAVKSLNSNKHNTTI-SKILQEIKILDEIRsseldhegKEYVIDFISSWKFQNSFYIMFDYYENGNLDTFLQeh 493
                 6789*****************************9999877.59********988765555333469**************************9999987 PP

                 ...HHSS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHH CS
     Pkinase  91 ...rkgslseeeakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGv 185
                    +  +l+e+++ ki+ ++  +l+++H s +i+H D+Kp+Ni+i  +g+lK++DFG+a++l    +  +  g++eY+APE++++  y+  +D++slG+
  CCD23074.1 494 iicKLIKLEEWRIWKIIVELSLALRFIHqSCQIVHLDIKPANIMITFEGNLKLGDFGMATHLPIVDDSFENEGDREYIAPEIISDCIYDFRADIFSLGL 592
                 77666779999*****************6677********************************99999****************************** PP

                 HHHHHHHSS-STTTSSHHHHHHHHHHT..HHHHHHHCT...SHH...HHHTTS.............................................. CS
     Pkinase 186 ilyelltgkppfsgekgkekvekeldq..lekilkilg...etkeklpeasei.............................................. 233
                 +++e+ ++ + ++   ++  ++++l+   l    k+     +++  + ++ ++                                              
  CCD23074.1 593 MVVEIAANVM-LP---DNGIAWHKLRSgdLSDAGKLSStnlHSDSLFSNPAKVdtnltdysytinsnieseengshtkssnniesiskskipawvpkfl 687
                 *****66555.55...46677888877445555555444443344444444449999999*************************************** PP

                 ..-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 234 ..seeakdllkkllkkdpkkRltaeellqh 261
                    e++ +++k++++ d kkR+ta+++l+ 
  CCD23074.1 688 idGESLEKMVKWMINPDYKKRPTADQILNT 717
                 ***************************985 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.1   1.2e-30     7e-27       4     209 ..     398     608 ..     395     632 .. 0.87

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 1.2e-30
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-.....B...TTB--EEEEEESSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklk.....h...pnivkllgvctkeepllivteyvkgGdLlkfLr 93 
                   +k+G+G+f++V++ t +     ++ k avK+l++++++++ +++l+e+ki+ +++     h   + ++ ++     +++ +i+++y ++G+L++fL+
   CCD23074.1 398 VHKIGSGEFSSVYQVTFT----MTNKKYAVKSLNSNKHNTTISKILQEIKILDEIRsseldHegkEYVIDFISSWKFQNSFYIMFDYYENGNLDTFLQ 491
                  689***************....788999************************8874122223222469999999999999****************** PP

                  HT...CTTTSBHHHHHHHHHHHHHHHHHHHHT.TEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHH CS
  Pkinase_Tyr  94 kk...ekekltlkdllsfalqvAkGmeyLesk.klvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksD 187
                  ++   +  kl+  ++ +++++++ +++++++  ++vH d+   N++++ +   k++DfG+a ++       ++ e++   +++apE+++++ +  ++D
   CCD23074.1 492 EHiicKLIKLEEWRIWKIIVELSLALRFIHQScQIVHLDIKPANIMITFEGNLKLGDFGMATHL---PIVDDSFENEGDREYIAPEIISDCIYDFRAD 586
                  **99989999999****************96538*****************************9...44555556666779***************** PP

                  HHHHHHHHHHHHTTSSGTTTTS CS
  Pkinase_Tyr 188 vWsfGvllwEiftlgespypgl 209
                  ++s G ++ Ei+ +   p +g+
   CCD23074.1 587 IFSLGLMVVEIAANVMLPDNGI 608
                  ***********99877776655 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.14   8.4e+02      17      49 ..     398     430 ..     392     444 .. 0.82
   2 ?   11.8   0.0   1.8e-05      0.11     161     244 ..     522     598 ..     485     615 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.14
  Kinase-like  17 gellkkgdrsvvfevkdqetgeplavkvfllps 49 
                  ++ ++ g++s v++v+   t+++ avk   +++
   CCD23074.1 398 VHKIGSGEFSSVYQVTFTMTNKKYAVKSLNSNK 430
                  6679999******************99766555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.8e-05
  Kinase-like 161 qakglvhgkftvdnllldekgglmlggf...taLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriw 244
                  q+ ++vh ++++ n++   +g l+lg+f   t+L  + ++   +e  + +  pE+++            + +  d   lGl +  i+
   CCD23074.1 522 QSCQIVHLDIKPANIMITFEGNLKLGDFgmaTHLPIVDDSFE-NEGDREYIAPEIISD---------CIYDFRADIFSLGLMVVEIA 598
                  889************************955568888888888.888888888888877.........44556666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1185  (0.066094); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5091.83
//
Query:       CCD23075.1  [L=51]
Description: hypothetical protein NDAI_0B00410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-21   75.4  12.6    2.3e-21   75.1  12.6    1.1  1  Ribosomal_L39  Ribosomal L39 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L39  Ribosomal L39 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1  12.6   1.3e-25   2.3e-21       1      41 [.       9      49 ..       9      50 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 1.3e-25
  Ribosomal_L39  1 kKlrLaKalkqNrpvPaWvrlktdrkvrynpkrRhWRrtkL 41
                   +K +LaKa kqNrp+P+W+rl+td+++ryn+krR+WRrtkL
     CCD23075.1  9 IKQKLAKAKKQNRPLPQWIRLRTDNTIRYNAKRRNWRRTKL 49
                   69**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      248  (0.0138323); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 402.99
//
Query:       CCD23076.1  [L=130]
Description: hypothetical protein NDAI_0B00420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-24   85.4   0.2    4.7e-24   84.7   0.2    1.3  1  Ribosomal_S8  Ribosomal protein S8


Domain annotation for each model (and alignments):
>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.2   2.6e-28   4.7e-24       3     127 .]       7     130 .]       5     130 .] 0.84

  Alignments for each domain:
  == domain 1  score: 84.7 bits;  conditional E-value: 2.6e-28
                   HHHHHHHHHHHHHTT-SEEEE.E--HHHHHHHHHHHHCTSEEEEEEE.CCCCCCEEEEE-BSSS-SBSSS.....EEEE-SBTTC--EE-CCC---C CS
  Ribosomal_S8   3 iadmltrirNaekakkeevev.pasklkeeilkvLkeeGyikdfeve.eekkkkikielkynkkkksvik.....klkrvskpgrrvYakvkelpkv 92 
                   +ad+l++i+Naek++k++v + p+sk++ + l+v++++Gyi +fe+  ++++ ki ++l+ + +k++vi+     k+ +++k   +       lp  
    CCD23076.1   7 LADALNAINNAEKTGKRQVLIrPSSKVIIKFLQVMQKHGYIGEFEYIdDHRSGKIVVQLNGRLNKCGVISprfnvKIADIEKWTAN------LLP-- 95 
                   8*********************************************9666677777777776677*****5554444444443333......344.. PP

                   GGGTSEEEEEETTEEEEHHHHHHCT--EEEEEEEE CS
  Ribosomal_S8  93 lnglGiaivsTskGvmtdkeArkkkvGGevlayvw 127
                    + +G +i++Ts+G+m ++eAr+k+v G++l +v+
    CCD23076.1  96 ARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130
                   467*******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1018.83
//
Query:       CCD23077.1  [L=138]
Description: hypothetical protein NDAI_0B00430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-46  155.6   2.3    6.3e-46  155.3   2.3    1.1  1  Ribosomal_S11  Ribosomal protein S11


Domain annotation for each model (and alignments):
>> Ribosomal_S11  Ribosomal protein S11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.3   2.3   3.5e-50   6.3e-46       1     110 []      16     134 ..      16     134 .. 0.99

  Alignments for each domain:
  == domain 1  score: 155.3 bits;  conditional E-value: 3.5e-50
  Ribosomal_S11   1 GvahiqasfnntiititdlkGaevlvksaGglgvkasr.kssPyaaqlaaekaaekvldkGikavevkvkg........pGpGreaalralaraGl 87 
                    Gva+i+asfn+t++++tdl+G+e++++ +Gg++vka+r +ssPyaa+laa+++a k+++ Gi+av+vk+++        pGpG +aalralar+Gl
     CCD23077.1  16 GVARIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRdESSPYAAMLAAQDVAAKCKEVGITAVHVKIRAtggtrtktPGPGGQAALRALARSGL 111
                    89********************************************************************************************** PP

  Ribosomal_S11  88 kigriedvtPiPhdgirrpkkrr 110
                    +igriedvtP+P d++r++++rr
     CCD23077.1 112 RIGRIEDVTPVPSDSTRKKGGRR 134
                    ********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1089.32
//
Query:       CCD23078.1  [L=229]
Description: hypothetical protein NDAI_0B00440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-99  330.6   1.2    3.7e-99  330.4   1.2    1.0  1  SOP4      Suppressor of PMA 1-7 protein


Domain annotation for each model (and alignments):
>> SOP4  Suppressor of PMA 1-7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.4   1.2  2.1e-103   3.7e-99       2     208 ..      19     222 ..      18     223 .. 0.97

  Alignments for each domain:
  == domain 1  score: 330.4 bits;  conditional E-value: 2.1e-103
        SOP4   2 asikgrldlslknisakdvsrtsfklyqignyssekpysastklkdieGnFeFedlPlnkgvnettyfvlvsssldfnLkPnRiLieftnleeegekkl 100
                 ++ikg+ldl   nis+ ++srt+f+lyqignys+++py+++t l+d++GnFeF++lP+n+g+nett+fvl+s+sldfnLkPnRiLief++le +g+  +
  CCD23078.1  19 TTIKGKLDLPFVNISNFSISRTYFSLYQIGNYSTNEPYYKKTGLQDSDGNFEFSNLPINSGINETTHFVLYSTSLDFNLKPNRILIEFKELE-NGT--I 114
                 79****************************************************************************************54.444..6 PP

        SOP4 101 evkafknvfGreyfpskdilyPekLeeleadpyieitlvkkaplRkYlqeRnegilqsGplanilnskwklaavitvillllFPllveklDpetakalk 199
                 + kafkn+fGreyfps+di++Pe+Le +e++pyi+i+ v++ap+R+Y+q+Rn+gilqsGpla+ilns+wk aav++vill++FP+lvek+Dpet+ka+k
  CCD23078.1 115 TSKAFKNFFGREYFPSNDIIHPEHLEAIEMEPYITISEVNMAPYRSYFQVRNVGILQSGPLASILNSRWKSAAVLSVILLAIFPFLVEKFDPETTKAMK 213
                 89************************************************************************************************* PP

        SOP4 200 eealkkqre 208
                 +eal k+r+
  CCD23078.1 214 QEALAKKRK 222
                 ******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1731.57
//
Query:       CCD23079.1  [L=400]
Description: hypothetical protein NDAI_0B00450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-32  110.8  17.9    2.7e-17   63.1   0.7    2.7  2  TPT       Triose-phosphate Transporter family
    0.00058   20.0  32.1      0.016   15.4  13.1    4.7  5  EamA      EamA-like transporter family
  ------ inclusion threshold ------
      0.035   14.0   3.5        3.4    7.5   0.4    3.5  3  DUF3611   Protein of unknown function (DUF3611)
       0.13   11.5   4.5       0.26   10.6   1.5    2.5  2  SLATT_5   SMODS and SLOG-associating 2TM effector domain fami


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3  10.5   2.3e-17     1e-13       2     174 ..      10     229 ..       9     239 .. 0.85
   2 !   63.1   0.7   5.9e-21   2.7e-17     172     289 ..     266     385 ..     254     386 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 2.3e-17
         TPT   2 klgllfllWYllnvvfnilnKkilnvfpyPltvsavqllvgsvlilvlwalglkk................................rpkisse...fl 65 
                 ++ +l+++WY+++++   + K++l ++p+Pl+++++q+l + +l++++ ++ ++                                 +  i+ +    +
  CCD23079.1  10 HIIILCICWYAISSLASQVTKQVLTLCPLPLFLGEFQFLYTALLAALSCTMAYYYpsfnnifpkgtfpeynrdynnsdyitrnssqqKNIITRPtkfIF 108
                 6889**************************************999888888665568999*************************96333333355689 PP

         TPT  66 kailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllv..ylsLlpivgGvalasvtElsFnl...........igfisAl 151
                 k++lpl++++++g+ +++   s v++S    +K++ P+F  ++ ++l  ++l+l++  y sL  +v+Gv +    + +F              g i+A+
  CCD23079.1 109 KTVLPLSVFQFVGKYFGHKGTSLVPISTVASIKTLSPLFILLFQKMLRIKTLPLTKilYFSLFSLVVGVWIIVREDSKFSTknknnsigsssYGVICAI 207
                 9*********************************************99998877642278***********99988888542222233333369***** PP

         TPT 152 isnltfslrnifsKkllkklkdl 174
                 is ++f+ +ni+ Kk+++  k+ 
  CCD23079.1 208 ISMFIFVGQNIYGKKVFTY-KSE 229
                 ****************998.553 PP

  == domain 2  score: 63.1 bits;  conditional E-value: 5.9e-21
         TPT 172 kdldalnlfaiitilslllllPvallvegvlktpsllkstkvs.lkevll.llllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfk 268
                 k+ d+l+l+ +i++++++l++   +++e      +l++ t++  ++e+ + l +l+g +++l+ ++++ +L ++s +t+s+an +Kr+ +I +s ++ +
  CCD23079.1 266 KSYDKLTLMIYISLVGFALSFCWFMALEFPIIWGHLFHGTSNDlIQEMPWrLYFLNGTFHFLQAMITFHLLGEISTLTYSIANLMKRIAIISVSWVFVG 364
                 67999*****************999999955666666666544467775515689******************************************** PP

         TPT 269 npvsllnaiGtavaivGvflY 289
                  +v+l +++G  + ++G flY
  CCD23079.1 365 RSVTLWQIVGLLLNVFGLFLY 385
                 ********************* PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.6      0.35   1.6e+03      35      41 ..      43      50 ..       7      72 .. 0.42
   2 !    9.3   3.6   0.00027       1.2      65     136 ..     109     181 ..      92     182 .. 0.71
   3 ?    1.3   0.0     0.079   3.5e+02       2      27 ..     201     226 ..     200     233 .. 0.81
   4 !    4.9   0.2     0.006        27      57      87 ..     263     293 ..     255     294 .. 0.69
   5 !   15.4  13.1   3.6e-06     0.016      36     134 ..     276     384 ..     266     386 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.35
        EamA 35 f.vrflia 41
                + ++fl  
  CCD23079.1 43 GeFQFLYT 50
                22333322 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00027
        EamA  65 llllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkq..llgivlillGvllil 136
                 + +l l+++ +v + ++  ++ + ++ s+++ i +l+P+f+l++   l  ++l l++  +++++  ++Gv++i+
  CCD23079.1 109 KTVLPLSVFQFV-GKYFGHKGTSLVPISTVASIKTLSPLFILLFQKMLRIKTLPLTKilYFSLFSLVVGVWIIV 181
                 444666666554.5578899************************999876665555500556666788888776 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.079
        EamA   2 lgillallaalfwaiyfvlskillrk 27 
                  g++ a+++++++    ++ k+++++
  CCD23079.1 201 YGVICAIISMFIFVGQNIYGKKVFTY 226
                 58999999999999999999988665 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.006
        EamA  57 aklslkdwlll.lllgllgtvlafllffyalk 87 
                  k++  d l l ++++l+g++l f ++f+al+
  CCD23079.1 263 HKPKSYDKLTLmIYISLVGFALSF-CWFMALE 293
                 355666655555999999999997.7777775 PP

  == domain 5  score: 15.4 bits;  conditional E-value: 3.6e-06
        EamA  36 vrfliagilllii...........allkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqll 123
                 + +l++++l + +           +l+++ +++ +   +w l++l g++ ++ a ++ f +l ++s  + s+++++  + ++  s+++ g ++tl+q++
  CCD23079.1 276 YISLVGFALSFCWfmalefpiiwgHLFHGTSNDLIQEMPWRLYFLNGTFHFLQA-MITFHLLGEISTLTYSIANLMKRIAIISVSWVFVGRSVTLWQIV 373
                 444444444444434444455566455555557999999**********99999.7999**************************************** PP

        EamA 124 givlillGvll 134
                 g++l ++G++l
  CCD23079.1 374 GLLLNVFGLFL 384
                 ********998 PP

>> DUF3611  Protein of unknown function (DUF3611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3      0.04   1.8e+02      44      81 ..     186     223 ..     145     239 .. 0.62
   2 ?    2.7   0.0     0.022     1e+02      85     115 ..     257     287 ..     253     301 .. 0.88
   3 ?    7.5   0.4   0.00077       3.4      24      89 ..     335     398 ..     325     400 .] 0.85

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.04
     DUF3611  44 eetnaglgfglflavlglvvllfsifwafrytrlarrL 81 
                 + ++++ + ++  + +g++++++s+f++ +    +++ 
  CCD23079.1 186 KFSTKNKNNSIGSSSYGVICAIISMFIFVGQNIYGKKV 223
                 33344444555556666666666666666665555555 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.022
     DUF3611  85 npelrpkkaevlqllklGlivnlvGmllall 115
                  pe +p+k +  + l+l ++++lvG  l++ 
  CCD23079.1 257 MPEIQPHKPKSYDKLTLMIYISLVGFALSFC 287
                 68899*********************99975 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.00077
     DUF3611  24 vLgvvsalillfallgrslaeetnaglgfglflavlglvvllfsifwafrytrlarrLraenpelr 89 
                 +Lg +s+l+  +a l++++a  + + + +g  +++  +v ll+++f  f y r++++   ++ ++r
  CCD23079.1 335 LLGEISTLTYSIANLMKRIAIISVSWVFVGRSVTLWQIVGLLLNVFGLFLYERCSNKR--KQIKSR 398
                 58999999999999999986677788889999***********************998..444445 PP

>> SLATT_5  SMODS and SLOG-associating 2TM effector domain family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.063   2.8e+02      46      76 ..     113     143 ..      94     153 .. 0.89
   2 ?   10.6   1.5   5.9e-05      0.26      37      93 ..     165     230 ..     151     233 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.063
     SLATT_5  46 vlsllsnkssestinenlldflsiilSilvl 76 
                  ls++++  +++ ++++ l  +s+++Si +l
  CCD23079.1 113 PLSVFQFVGKYFGHKGTSLVPISTVASIKTL 143
                 589999*********************9876 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 5.9e-05
     SLATT_5  37 lsllSvylivlslls.........nkssestinenlldflsiilSilvlvisllessknykerAek 93 
                 + ++S++++v+ ++           k+++++i ++ + ++ +i+S++++v +++ ++k +  ++e+
  CCD23079.1 165 ILYFSLFSLVVGVWIivredskfsTKNKNNSIGSSSYGVICAIISMFIFVGQNIYGKKVFTYKSEN 230
                 445555555555544444555555788899999999**************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3071.22
//
Query:       CCD23080.1  [L=569]
Description: hypothetical protein NDAI_0B00460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-09   37.9   0.0    7.7e-09   35.9   0.0    2.1  1  AAA_22     AAA domain
    1.6e-08   35.0   0.0    6.5e-08   33.1   0.0    2.0  1  AAA        ATPase family associated with various cellular act
    2.5e-07   30.6   0.1    5.9e-07   29.4   0.1    1.6  1  Cdc6_C     CDC6, C terminal winged helix domain
    7.8e-07   29.6   0.0    3.7e-06   27.4   0.0    2.0  1  AAA_16     AAA ATPase domain
     0.0039   16.6   0.1       0.24   10.8   0.1    2.3  1  TniB       Bacterial TniB protein
     0.0053   17.1   0.6      0.058   13.7   0.5    2.3  1  AAA_19     AAA domain
     0.0077   15.8   0.1       0.95    9.0   0.0    3.0  3  AAA_7      P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.019   14.9   0.2         10    6.1   0.0    3.7  4  AAA_5      AAA domain (dynein-related subfamily)
      0.029   14.2   0.2      0.093   12.5   0.0    2.0  2  AAA_11     AAA domain
      0.045   13.7   0.0       0.28   11.1   0.0    2.1  1  ATPase_2   ATPase domain predominantly from Archaea
       0.11   12.3   0.0       0.25   11.1   0.0    1.6  1  AAA_29     P-loop containing region of AAA domain
       0.12   12.1   0.0       0.27   11.0   0.0    1.5  1  IstB_IS21  IstB-like ATP binding protein


Domain annotation for each model (and alignments):
>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   5.2e-12   7.7e-09       4     130 ..     166     329 ..     162     336 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 5.2e-12
      AAA_22   4 tagilvvtGesGtGKTtllrrlleq..ldeeakaee...........................erpevvfvtlpsstsskdllrellralglelka... 70 
                 + ++l++tG++GtGKT  +  +l++  l++ +k  +                           +++ v ++++ ++t+++++++++ +a++ ++ +   
  CCD23080.1 166 KSSSLYITGPPGTGKTAQVDSILKSsfLPIIPK--HsqnqsipklsshdlnnvslyqlpsgkiQQVAVTSINCIALTNPSSIFTRIYEAFHKQTFNtni 262
                 6689******************98711344444..25699********************988888888**********************99999*96 PP

      AAA_22  71 ...erlsseellealeqalrarav..ielliiDEaqhlr..s......eealeeLrsllnlsrkgvqliLvGt 130
                    +       ++al+q ++++a   + ++++DE ++l   s       ++l eL  l+      v ++L+G 
  CCD23080.1 263 pstP----VKTMHALQQFMEQYAQttTFIVVLDELDKLVhpSitnvhsTKILFELFLLSR--IPTVNFLLIGI 329
                 5533....444444444444444444459********98773333444666666655555..66677777775 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   4.4e-11   6.5e-08       2     121 ..     171     342 ..     170     349 .. 0.70

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 4.4e-11
                 EEESSTTSSHHHHHHHHHHHH..........THE...........................EEEEETTTCSSS......................STTH CS
         AAA   2 llyGppGtGKTllakavakel..........gve...........................fleisgsellsk......................yvge 41 
                 +++GppGtGKT+ + ++ k++          + +                           + +i++  l++                       +  +
  CCD23080.1 171 YITGPPGTGKTAQVDSILKSSflpiipkhsqN-QsipklsshdlnnvslyqlpsgkiqqvaVTSINCIALTNPssiftriyeafhkqtfntnipsTPVK 268
                 789*****************644444444331.0333344444444444444444444444667777777755899999*****9*****998888888 PP

                 HHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHS CS
         AAA  42 sekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallr 121
                 +++ +++++++  +   + i+++DE+d+l+  +   ++ ++++++ +L+      +    ++++ig++n+ d+ d+ l r
  CCD23080.1 269 TMHALQQFMEQYAQTT-TFIVVLDELDKLVHPS--ITNVHSTKILFELFLLSRIPTV---NFLLIGIANSLDMKDRFLSR 342
                 8888888888865554.7***********9999..4555556666666555555555...79*********999887764 PP

>> Cdc6_C  CDC6, C terminal winged helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1     4e-10   5.9e-07       1      79 [.     470     551 ..     470     555 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 4e-10
                 HHHHHHHHC.HCSSS-EEHHHHHHHHHHHHHHT.T-----HHHHHHHHHHHHHTTSEEEEEEE-.CC.C-EEEEEEESSSCH CS
      Cdc6_C   1 Lcalvlllr.ksgkeevttgevyevYkslCese.gvdpltqrevsdllseLemlgilelekssk.GrregrtrkisLnvdpd 79 
                 Lc lv+  + +  +  ++++++y+ Y +l ++   + pl+++e++++++ Le+ g++++ +++  Gr +   + i+ +vd +
  CCD23080.1 470 LCCLVHRQKiDIFQSHCSLDDAYDYYYQLLKRKdSLIPLKRNEFLEICNALETNGVVTIFRGKTqGRTKHSIKMIKTTVDDK 551
                 7888888888888999****************97889*********************965432366666666666666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   2.4e-09   3.7e-06       3     148 ..     145     297 ..     143     327 .. 0.59

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 2.4e-09
      AAA_16   3 vGReeeleqLlsale.rvrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesa...........ipy....sa.laqalareellrq 84 
                 + R+ +  q+l+ l+ +  ++ +++++++G++G+GK++ v+++l++        +  k  q++s              +    s  + q++   + ++ 
  CCD23080.1 145 PTRKLQYLQILEFLNrNMEAHKSSSLYITGPPGTGKTAQVDSILKSSFLP----IIPKHSQNQSIpklsshdlnnvS-LyqlpSGkIQQVA-V-TSINC 236
                 66777777887777746666666*********************966666....77777777333222233333321.1232223122222.2.22222 PP

      AAA_16  85 lldeaesaeleawrekleeala..................avpelagaeasrllellkrll.allsrderplvlvlDdlqwad 148
                 +                    a                    +   ++ +    ++l++++ +++++    +++vlD+l+++ 
  CCD23080.1 237 I--------------------AltnpssiftriyeafhkqTFNTNIPSTPVKTMHALQQFMeQYAQT-TT-FIVVLDELDKLV 297
                 2....................22333333333333333443344445555889999*****555555.55.*********764 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00016      0.24      18     138 ..     150     303 ..     145     343 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00016
        TniB  18 eilerLeeLleypkrkrmpnlllvGdsnnGKtmivekFarlh..ppekdedae.........................kvpvlvvqappkpdekrlyaa 89 
                 + l+ Le L ++ ++++ ++l++ G++ +GKt+ v++  ++   p  ++++++                         +v v  +++    + + ++++
  CCD23080.1 150 QYLQILEFLNRNMEAHKSSSLYITGPPGTGKTAQVDSILKSSflPIIPKHSQNqsipklsshdlnnvslyqlpsgkiqQVAVTSINCIALTNPSSIFTR 248
                 66888999999999999999999*******999888777665443222211111234455556666777777777766778888888888888888888 PP

        TniB  90 iLealgaplkara......rvskleqqvlrllrelkvrvLiiDEihnllagsark 138
                 i ea+ +++ +++      ++ ++ qq ++   ++ + ++++DE+++l++ s ++
  CCD23080.1 249 IYEAFHKQTFNTNipstpvKTMHALQQFMEQYAQTTTFIVVLDELDKLVHPSITN 303
                 8888877754444455445555667777777778888888888888887766554 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.5   3.9e-05     0.058       6      33 ..     163     190 ..     159     303 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.9e-05
      AAA_19   6 ealkekvllvtaGpGtGKTrvlkhival 33 
                 ea+k++ l +t++pGtGKT  +  i++ 
  CCD23080.1 163 EAHKSSSLYITGPPGTGKTAQVDSILKS 190
                 588999*************999988775 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00063      0.95      31      56 ..     165     190 ..     150     200 .. 0.80
   2 ?   -2.2   0.1       1.7   2.5e+03      61      97 ..     228     264 ..     221     281 .. 0.69
   3 ?    3.1   0.0     0.039        58      21      96 ..     306     384 ..     292     391 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00063
       AAA_7  31 knkkpvllvGptGtGKtviikdllkk 56 
                 +++ ++ ++Gp GtGKt+ + ++lk+
  CCD23080.1 165 HKSSSLYITGPPGTGKTAQVDSILKS 190
                 344567789***********998875 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
       AAA_7  61 kylsltinfsaqtsanqlqdiiesklekrrkgvygPp 97 
                 ++ +++in+ a t+++++ + i + ++k++ ++  P 
  CCD23080.1 228 QVAVTSINCIALTNPSSIFTRIYEAFHKQTFNTNIPS 264
                 5667777777777777777777777777766665554 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.039
       AAA_7  21 rysyllelllknkkpvllvGptGtGKtviikd.llkkld.kekylsltinfsaqtsanqlqdiies.klekrrkgvygP 96 
                 ++++l+el+l ++ p++     G + ++ +kd +l++l+ ++++l+ t+ f+ + s +++q i+++ +l   +++v+ P
  CCD23080.1 306 STKILFELFLLSRIPTVNFLLIGIANSLDMKDrFLSRLNlRQDLLPETLIFQPYSSDEMFQIIMDRiNLVDPNESVFNP 384
                 5677888888888888888889999*************9999*******************999863455555556655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.26   3.9e+02      11      35 ..     117     141 ..     116     163 .. 0.92
   2 ?    6.1   0.0     0.007        10       3      20 ..     171     188 ..     169     192 .. 0.83
   3 ?   -2.4   0.0       2.9   4.4e+03      98     124 ..     222     244 ..     210     255 .. 0.66
   4 ?    2.8   0.0     0.074   1.1e+02      55      84 ..     272     304 ..     238     346 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.26
                 SHHHHHHHGGGGBS--EEEEE--TT CS
       AAA_5  11 gKselaerlaaalnreveyvqltrd 35 
                 gK++l  r +a+l+r++e+v +++d
  CCD23080.1 117 GKNSLYSRTKAVLQRSTETVTNKED 141
                 9*******************99876 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.007
                 EEE--SSSSHHHHHHHGG CS
       AAA_5   3 lLvGppGtgKselaerla 20 
                  + GppGtgK+  +++++
  CCD23080.1 171 YITGPPGTGKTAQVDSIL 188
                 689********9888775 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.9
                 -SSSEEE---......-EEEEEESS-- CS
       AAA_5  98 eggelvkaknddllerfrviatanpld 124
                 ++g+ ++++ ++    +++ia++np +
  CCD23080.1 222 PSGKIQQVAVTS----INCIALTNPSS 244
                 444444444433....999***99976 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.074
                 ..--------..G-SEEEEESGGG--.HHHHHH CS
       AAA_5  55 vdsplvraar..egeilvlDEverae.sevlns 84 
                   + ++++    +  i+vlDE++++  ++++n+
  CCD23080.1 272 ALQQFMEQYAqtTTFIVVLDELDKLVhPSITNV 304
                 444444433366889999999998654666654 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.2e-05     0.093      16      42 ..     167     192 ..     150     288 .. 0.72
   2 ?   -2.9   0.0       3.1   4.6e+03      12      41 ..     518     547 ..     513     560 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.2e-05
      AAA_11  16 eseitliqGPPGtgKTktivellsqll 42 
                 +s    i GPPGtgKT  + ++l++  
  CCD23080.1 167 SS-SLYITGPPGTGKTAQVDSILKSSF 192
                 33.478**********99998888775 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.1
      AAA_11  12 salsese.itliqGPPGtgKTktivellsql 41 
                 +al++++ +t++ G+  +g+Tk+ +++++  
  CCD23080.1 518 NALETNGvVTIFRGK-TQGRTKHSIKMIKTT 547
                 566666667777888.788998888888766 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00019      0.28       8     135 ..     155     301 ..     153     323 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
    ATPase_2   8 lkeleeilerepneiyfiYGpegsGKtaLlkeiienl....edkdkyviyyialreesiskldefieeeeekkklekal...................g 83 
                 l+ l++ +e  +++ ++i+Gp g GKta +  i++ +      k+ +   + +l+++++++++ +   +  + k+++++                    
  CCD23080.1 155 LEFLNRNMEAHKSSSLYITGPPGTGKTAQVDSILKSSflpiIPKHSQNQSIPKLSSHDLNNVSLY---QLPSGKIQQVAvtsincialtnpssiftriY 250
                 566778888999999*************9999988773111223334445555555555555555...3444444444456667777777777776668 PP

    ATPase_2  84 iavpkaeleeilkeksklvfkaielllekikkkgkkiiiiiDelqklidlgl 135
                 +a+ k+++++ + ++  +   a+++++e+  ++    i+++Del kl++  +
  CCD23080.1 251 EAFHKQTFNTNIPSTPVKTMHALQQFMEQYAQTT-TFIVVLDELDKLVHPSI 301
                 8888888877777777777888888888887774.48999999999985554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017      0.25      12      42 ..     157     187 ..     147     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
      AAA_29  12 fdghtieidlkgatlltGpsGsGKSTllDAi 42 
                 f ++ +e + +++  +tGp G+GK++ +D+i
  CCD23080.1 157 FLNRNMEAHKSSSLYITGPPGTGKTAQVDSI 187
                 566778888777999**************98 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.27      15      61 ..     129     181 ..     119     187 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
   IstB_IS21  15 aqktledidfraarsldkrkvkeLatlsfiekk......enivllGpsGvGKs 61 
                  q+  e++  ++  sl  rk++ L+ l+f++++       ++ ++Gp+G+GK+
  CCD23080.1 129 LQRSTETVTNKEDGSLPTRKLQYLQILEFLNRNmeahksSSLYITGPPGTGKT 181
                 577788899999999**************98652222226799*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 4279.04
//
Query:       CCD23081.1  [L=670]
Description: hypothetical protein NDAI_0B00470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-05   22.6   0.0    0.00024   21.3   0.0    1.7  1  Myb_DNA-binding  Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.057   13.5   0.8       0.14   12.3   0.2    2.0  2  Med28            Mediator complex subunit 28


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.6e-08   0.00024       4      44 ..     565     606 ..     564     608 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.6e-08
                      SBHHHHHHHHHHHHHHTTCHHHHHHHHTS.S-HHHHHHHHHH CS
  Myb_DNA-binding   4 WteeEdelLleavkkhGnrWkkIaerlgg.Rtekqcrsrwrn 44 
                      +++ E++l+++a   + +++ kI++++gg R+ ++c +++++
       CCD23081.1 565 FSKREHDLFVKAYLIYPKKFGKISKYMGGlRSCEECVLHYYR 606
                      8999************************55**********97 PP

>> Med28  Mediator complex subunit 28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.51   4.6e+03      32      54 ..     233     255 ..     231     271 .. 0.80
   2 ?   12.3   0.2   1.5e-05      0.14      32      83 ..     307     361 ..     292     412 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.51
       Med28  32 eLsasvsdlkkelerkaekykva 54 
                 +Ls + ++ k e+e++ ek k+ 
  CCD23081.1 233 DLSKKFFNDKMEVENELEKQKLV 255
                 58888888899999998888875 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.5e-05
       Med28  32 eLsasvsdlkkelerkaekykvapeellmkHlqkts...eqlatqlkalrekgqn 83 
                  L +++ +lkk+le k ek   + +  ++kH++++     +++tql  lre+  n
  CCD23081.1 307 LLITDLTNLKKHLESKKEKLSKSWQVPINKHVSSCIyplTKVSTQLAGLRERLIN 361
                 677899**********99999999**********863336789********8654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1197  (0.0667633); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.38
# Mc/sec: 5268.51
//
Query:       CCD23082.1  [L=1253]
Description: hypothetical protein NDAI_0B00480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-76  255.9   0.0    4.2e-75  252.6   0.0    2.7  3  UCH           Ubiquitin carboxyl-terminal hydrolase
    2.6e-15   56.8  12.1    6.7e-08   32.5   1.9    3.8  3  UCH_1         Ubiquitin carboxyl-terminal hydrolase
    1.2e-09   38.7   0.2    1.1e-08   35.5   0.2    2.8  1  DUSP          DUSP domain
     0.0042   16.8   0.3        5.1    6.9   0.0    2.8  2  ubiquitin     Ubiquitin family
  ------ inclusion threshold ------
        2.3    7.8   6.0       0.84    9.2   0.4    3.1  3  TF_Zn_Ribbon  TFIIB zinc-binding


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   1.4       1.7   6.1e+03      93     118 ..       4      40 ..       2      85 .. 0.66
   2 ?   -2.4   0.2      0.72   2.6e+03      27      90 ..     228     307 ..     206     311 .. 0.58
   3 !  252.6   0.0   1.2e-78   4.2e-75       1     257 []     330    1084 ..     330    1084 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.7
                 TSSSTCEHHHHHHHHHHHHHHHHCC...........H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx...........x RF
         UCH  93 sgykqqDaqEflaflLdqlhedlnr...........e 118
                 +  +   ++E+  +l+d+l++d ++           +
  CCD23082.1   4 NDDENTESEELDVQLFDDLNDDKREqsqnqlekdksQ 40 
                 5566667788888888888888877332222222220 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.72
                 HHHHTCHHCCSSTCCCCC-....TT.TTS.TTH...............HHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSG CS
                 xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  27 dyllsleevkkesrnkkel...nesnplgkkge...............lakalkdlfkellkskskavsPkklkktlsklak 90 
                 dy+  +e++ + ++ + ++   +  +p+ +++                 ++a++++  +l  ++ k+++P+++  ++++  k
  CCD23082.1 228 DYFAAIETNIDATQMNFQIwyvD--DPSASHTAsilstlyelnpiqflSFNAITKITTQLMDKQMKEFTPTSFDFVIETKPK 307
                 56666555555555555555321..222222223455556666666655678888888888888999999999887776655 PP

  == domain 3  score: 252.6 bits;  conditional E-value: 1.2e-78
                  -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH...SH-CCEE--HHHHHHHHHHSGGGTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH    1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell...kskskavsPkklkktlsklaksfsg 94  
                  +Gl+NlGntCymns+lQc+++ip +rdy+l+        + +ke+ne nplg++g +a+a++dl+++l     ++++a+sP+ +k+tl++++++fsg
  CCD23082.1  330 IGLTNLGNTCYMNSALQCITHIPIFRDYFLY-------GTFQKEVNEGNPLGYQGYMARAFSDLIQSLFgdnITSTTAYSPSYFKSTLGHFNSMFSG 419 
                  59*****************************.......8899999*************************9977899******************** PP

                  SSTCEHHHHHHHHHHHHHHHHCC.........................HCCCHHHHHHCCCTTSHHHHHH-EEEEE..................... CS
                  xxxxxxxxxxxxxxxxxxxxxxx.........................xxxxxxxxxxxxxxxxxxxxxxxxxxxx..................... RF
         UCH   95 ykqqDaqEflaflLdqlhedlnr.........................evaeekwkkhlkrndslitdlfegqlks..................... 145 
                  y qqD+qEflaflLd+lhedlnr                         + a+++wk hl rnds+itdlf  ++ks                     
  CCD23082.1  420 YLQQDSQEFLAFLLDSLHEDLNRidkkpyvekpslpltanlndfdvvkRLADDTWKAHLLRNDSVITDLFVAMYKStlkcpecqntsvtfdpyndlt 516 
                  ***********************************************99999********************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  CCD23082.1  517 lplpvasiwhtkvkifplnsppctlevelaktstyldlksyisectgikiqnlfgceifshqfytnyetvesnsqflplqelisdqddvifyeinis 613 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  CCD23082.1  614 ndeiivpvlntkveenfsrpslfgvpffitlsaseldnpcliryklekcysnlsggfipfpsteqeefptlddfpllsakypkealekytdvlhysv 710 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  CCD23082.1  711 picidndkqvrneeyfkikilnfkqsiktinnandgkqspafwvpqthmnfskaqditellnpitrslyqyhlssddeitseglvdtaknerklmkv 807 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  CCD23082.1  808 qdsdlesplseenisvdkdldtitpeqeqlgidneidleeiqetdgnseekceeqpaevsqttvlnnnldhtynrstlicpgnviicewpatniqka 904 
                  ************************************************************************************************* PP

                  .....................................................................EEEEEEB-SEEEEEEESEEETEE.EEE- CS
                  .....................................................................xxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
         UCH  146 .....................................................................klklkrlPeiLiihlkRfsynss.ksKl 172 
                                                                                       +++l+++P+iL+ihlkRf+ ++s ++K+
  CCD23082.1  905 ftedkvinwehpaplpnpqleklkeqrdkqeerhitlddclklfskpeilssndswycphckehrqatkQIELWNTPDILLIHLKRFENQRSfSDKI 1001
                  ************************************************************************************************* PP

                  -SEEB--S.EEE-GGGBSS-BTTS-TCS-BEEEEEEEEEESCTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCCCTTCEEEEEE CS
                  xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  173 ntkvefpe.eldlssylaeekkkkteekkkYeLiavvvHsGslssGHYvayiknekngkWykydDetvkevkeeeevlssayiLfY 257 
                   ++v fp+ + d+s++l    +k+ ++++ Y+Liav +H+G+l++GHY+ay+kn +++kWy++dD++v+ +  e+++  say+LfY
  CCD23082.1 1002 VDTVFFPItDFDISEHLV---YKEDPRGNVYDLIAVDNHYGGLGGGHYTAYAKNANDNKWYYFDDSRVSVTAPEKSIAGSAYLLFY 1084
                  *******879*****998...666677899******************************************8866666******* PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.4       1.7   5.9e+03      76     120 ..      43      88 ..      16      98 .. 0.52
   2 !   28.7   0.1   2.7e-10   9.5e-07       2     164 ..     331     518 ..     330     574 .. 0.75
   3 !   32.5   1.9   1.9e-11   6.7e-08     131     320 .]     845    1066 ..     717    1066 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.7
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
       UCH_1  76 easalglileeeeetekssaislssliqs..fnrflldqlekelket 120
                 e++a   ++ e+ ++++++ +++s+li     +r ++++l +e k++
  CCD23082.1  43 ENDASVAVEAES-NDNEEEGDNTSQLIPDlpSQRNIISDLLEENKNM 88 
                 233333333333.2234555566666664446777777766666655 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 2.7e-10
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplr.nlalshlakeckkehcLlcElgflfdmldkakglncqasnFlralssipe..asalglileeeeetekssais 97 
                 GL n  +++Y+Ns LQ+  +ip +r  ++   ++ke ++ + L ++ g++ +  ++   ++    n + +   +p+  +s+lg +     ++    +  
  CCD23082.1 331 GLTNLGNTCYMNSALQCITHIPIFRdYFLYGTFQKEVNEGNPLGYQ-GYMARAFSDLI-QSLFGDNITSTTAYSPSyfKSTLGHF-----NS--MFSGY 420
                 899999*******************666666666677777776666.66665554444.34455555555555554223444444.....11..22234 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxx...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  98 lssliqsfnrflldqlekelketkkns...............................seeesaieqllgtkaettirclkCgseksrksstlvldlk 164
                 l++  q+f  flld l+++l++  k++                                +++s i++l+   +++t++c +C+++++  +    l l 
  CCD23082.1 421 LQQDSQEFLAFLLDSLHEDLNRIDKKPyvekpslpltanlndfdvvkrladdtwkahlLRNDSVITDLFVAMYKSTLKCPECQNTSVTFDPYNDLTLP 518
                 5555678***************99988*******************************999999********************99888777776663 PP

  == domain 3  score: 32.5 bits;  conditional E-value: 1.9e-11
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx........................................xxxx..........xx RF
       UCH_1  131 ieqllgtkaettirclkCgseksrksstlvl....dlkyPk........................................psne..........kk 173 
                  +e++ +t+ +++ +   C+++  + s t vl    d +y +                                        p  +          ++
  CCD23082.1  845 LEEIQETDGNSEEK---CEEQPAEVSQTTVLnnnlDHTY-NrstlicpgnviicewpatniqkaftedkvinwehpaplpnP--QleklkeqrdkQE 935 
                  44344444443333...4444444444444423332222.122333334455555555555555555555555555555440..1445555556677 PP

                  xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  174 eakvtfasilkssler...ekttrawCekCkryqpteqrktvknlPpvLalnakleeeeelelwkt...knwlp.leiklsldedknleeklkeere 263 
                  e + t++++lk + +     ++    C++Ck+  + +++  + n P++L++++k++e++ +++  +   + ++p +++++s             e  
  CCD23082.1  936 ERHITLDDCLKLFSKPeilSSNDSWYCPHCKEHRQATKQIELWNTPDILLIHLKRFENQ-RSFSDKivdTVFFPiTDFDIS-------------EHL 1018
                  788999******99996655666778****************************98443.333333443567777777772.............222 PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  264 kakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWylFNDflV 320 
                    k++ + +vY+L++v  h g +   gh+ +++k a        ++++Wy F+D  V
  CCD23082.1 1019 VYKEDPRGNVYDLIAVDNHYG-GLGGGHYTAYAKNA--------NDNKWYYFDDSRV 1066
                  234567899************.777*********43........348*******877 PP

>> DUSP  DUSP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.2   3.1e-12   1.1e-08       1      90 [.      92     170 ..      92     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 3.1e-12
                 T-EEEEEEHHHHHHHHHHHTTSTTSTTTTCGCS--SB-CGGGB.......TTTEB-SS--BTTTEEEEEHHHHHHHHHHC-...T----EEEE CS
        DUSP   1 gqkyyliskkWleqwksyvsydavteekesgskpgpIdnsdllkappltkengrlkpnlqegrdyeivpeevwkfLvqwYg...ggpeikrkv 90 
                 g+k+y+i+k W+ + k+ v       + ++++  gpId s ++      k++ +l     +++ y+ +pe+v+ +L++wYg   g+++++  +
  CCD23082.1  92 GDKIYIIPKYWFDKLKDPV-------TADPNE-LGPIDPSLIC------KDYDNLILADYNKHPYIPLPESVFLKLYEWYGlaqGSQPVVTFL 170
                 79*****************.......355666.9*********......6899999999999*******************988888777665 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0014       5.1      10      37 ..     540     567 ..     528     569 .. 0.84
   2 !    6.9   0.1    0.0015       5.2       8      45 ..    1089    1126 ..    1083    1134 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0014
                 EEEEEEETTSBHHHHHHHHHHHHTSSGG CS
   ubiquitin  10 kitleveesdtveelKekiaekegipae 37 
                 ++++e+++++t+++lK  i+e++gi  +
  CCD23082.1 540 TLEVELAKTSTYLDLKSYISECTGIKIQ 567
                 7899********************9765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0015
                  SEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETT CS
   ubiquitin    8 gkkitleveesdtveelKekiaekegipaeqqrLiysG 45  
                  + +  +e + ++t++e  e+ ++k     e+q++iy+ 
  CCD23082.1 1089 SHENVVETSLQETIKEAREAHQRKILALEERQKIIYED 1126
                  5567899*****************************85 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   0.00024      0.84       2      15 ..     498     511 ..     497     516 .. 0.88
   2 ?   -1.8   0.2      0.64   2.3e+03       3       9 ..     962     968 ..     961     972 .. 0.79
   3 ?   -1.0   0.0      0.35   1.3e+03      28      38 ..    1155    1165 ..    1154    1168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00024
                   EETTTTCEECHEET CS
  TF_Zn_Ribbon   2 kCPnCgstnlveDp 15 
                   kCP+C +t++++Dp
    CCD23082.1 498 KCPECQNTSVTFDP 511
                   9*********9996 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.64
                   ETTTTCE CS
  TF_Zn_Ribbon   3 CPnCgst 9  
                   CP C+  
    CCD23082.1 962 CPHCKEH 968
                   ****975 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.35
                    EEEECCCCCCC CS
  TF_Zn_Ribbon   28 Vlednsidegp 38  
                    V edn+i+e+p
    CCD23082.1 1155 VFEDNDIVERP 1165
                    99******988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1273  (0.0710023); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.50
# Mc/sec: 7567.30
//
Query:       CCD23083.1  [L=921]
Description: hypothetical protein NDAI_0B00490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-51  176.1  18.9    2.6e-51  175.7  18.9    1.1  1  SPX             SPX domain
    1.8e-30  106.2  56.4    2.1e-25   89.6  35.1    2.1  2  CitMHS          Citrate transporter
    4.6e-21   75.4  33.5    6.1e-21   75.0  33.5    1.2  1  Na_sulph_symp   Sodium:sulfate symporter transmembrane region
  ------ inclusion threshold ------
        1.1    9.7   7.1        1.2    9.5   3.1    2.3  2  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.7  18.9   5.9e-55   2.6e-51       1     382 [.       1     359 [.       1     360 [. 0.62

  Alignments for each domain:
  == domain 1  score: 175.7 bits;  conditional E-value: 5.9e-55
         SPX   1 MKFakeLeenlvpEWrdaYldYkqLKKlIkkvqr.eleslgleaetlrellnrpedskkksse................rtepstsaaadesgnsaada 82 
                 M+F++ L++n+vpEW+++Y+dY++LK lI+ +q+ el+            ln+++d+++++++                +                  +
  CCD23083.1   1 MRFSHFLKYNAVPEWQSHYVDYNALKDLIYTLQTdELK------------LNHNNDDDDDDATggsssrfgkklknklfH------------------N 69 
                 9*********************************8888............666666655555444333333332112111..................1 PP

         SPX  83 sssepkdeae..slprrspl...srssrssssygglvssppsansssssddssesnpadssssssssesesssssspsllrrlfs.esesreeksersy 175
                 ++s+   + +  + ++  +l   +++++++ + +++++++++++ s+++++++++n            + ++++s+ s l+r+++    sr+++s+++ 
  CCD23083.1  70 NKSTITGKSTnnNVNSDGKLavgDMIHEETFELSDIPHHQNDSSLSQQQNNKNNNN------------THTTTPSKFSALKRVHGkLFDSRRSSSSSDD 156
                 11111111111122222222212444444444444444444444444444444444............5555555555555554443336666666666 PP

         SPX 176 etrplraekeFferLdseLnkvetFykakeeefterlesLrkqleal.rprrikeaeerksdlyrwreifglksveaqvfessreldrgelse...... 267
                 ++++++  + F++ L+ e  kv++Fyk+ e +f+er+e+L k+le   +   +   +   +              ea+   s++e++  + ++      
  CCD23083.1 157 DKTIINTYDTFLNNLTVEKLKVDDFYKRTEAKFYERFEALIKDLEMEgISADTLSLNFFPE--------------EANEIPSNSETNDLQDPIsgsktf 241
                 6678889**************************************9977755553333322..............222222222222222222233344 PP

         SPX 268 .......eardkevseelekngwikptksklekkrneralekvkpektlkafldsvrrdylrkenrvklkkakk.klkkafvelYrgLelLKsYqeLNr 358
                        e+++ ++++ele +g  + +++++    +e++ +++ ++ +  +f  ++  + l+++++v++k++k+  lk+ +++lY++L++LKs++eLNr
  CCD23083.1 242 nvlktfgEQTQINNENELELDGTGNNNNENE----DEDDEDDI-DDYDYGEFDEAQDHTALLNYSQVNIKSQKNsLLKQSIINLYIDLCQLKSFIELNR 335
                 4565666666666666666666666655433....33333333.44466666555555555555**********9************************ PP

         SPX 359 tAFrKIlKKfDKvtaltaskrymk 382
                 ++F+KI+KK DKv++l++++++++
  CCD23083.1 336 LGFTKITKKGDKVLHLNIKDELIQ 359
                 *******************99875 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6  35.1   4.6e-29   2.1e-25       2     283 ..     522     867 ..     521     880 .. 0.83
   2 !   31.6  13.3   2.1e-11   9.3e-08      14     136 ..     769     898 ..     750     916 .. 0.81

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 4.6e-29
                 xxxxxxxxxxxxxxxxxxxxx...............xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
      CitMHS   2 vllileklrldvvallvlvll...............vltiee....alsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd.llvllvl 80 
                  l++ e+++l ++a+lv +l+                    +    ++s + s++i++ll+++++++al++ ++++ la +ll +ag+k++ +l++ + 
  CCD23083.1 522 FLWASEAIPLHITAFLVPLLTvlfrvlknddgsvmkA---TTasstIFSSMWSSTIMILLAGFTLAEALSQYNIAKVLASWLLAAAGTKPRnVLLMAMG 617
                 5899999********9999999999777776664331...2255579999999999******************************************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...............xxxxxxxx RF
      CitMHS  81 ltallsafvsndgvvlimipivlslakrlkklppl...lliplalaaniggaltpiGtpttraaarpglslpnlll...............lalllvgl 161
                 ++++ls+++sn+++ +++ +++ ++   +  ++p    l++ +alaanigg+ +pi  p            +n++                 ++l +g+
  CCD23083.1 618 VVFFLSMWISNVAAPVLTYSLLKPILDTMDASKPFaqsLILGVALAANIGGMSSPISSP------------QNIISmeylkpygigwgqffAVALPTGI 704
                 **************9*********99998888888999*********************............9999999999999999888544444444 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................xxxxxxxxxxxxx RF
      CitMHS 162 lplvllfmfgvalalpvnapkvkkqkaiieaiarsllpvatillla........................................ykkveWsvlllfa 220
                 + ++ l++  ++l +++n  k +k k i  + + +    ++i+ ++                                        +++ +Ws+++l+ 
  CCD23083.1 705 ISML-LAWGLICLTFKINTSKLTKFKPIKTRFTIKQYY-VIIV-TIgtillwcveaqiegafgssgqiailpivlffatgllttkdLNAFPWSIVILAM 800
                 4444.456888999999999888888887777775553.3333.22356666899999999999999999999999999******************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxx...x.xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 221 GvfllvgaleqtGilealadllga...g.gplvalalvlglial.lsafisnvavaalmapialgmap 283
                 G + l++a++ +G+l ++a +l+    + g  +a+++++g+++l +  f+s +  a++++p++ ++  
  CCD23083.1 801 GGIALGKAVQSSGLLATIARALQRkieNdGT-MAILCIFGILMLvVGTFVSHTVSAIIIIPLVQEVGD 867
                 **********************556984466.4556666666666999*****9*******9988765 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 2.1e-11
                 xxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      CitMHS  14 vallvlvll....vltieealsgiaspiillllgamiigaaleetGlfdrlaakllrlaggkrd..llvllvlltallsafvsndgvvlimipivlsla 106
                 +a+l++vl+    +lt ++ l+++ ++i++l +g++ +g+a++++Gl   +a+ l r+  +  +  +l+++++l+ +++ fvs ++ ++i+ip+v +++
  CCD23083.1 769 IAILPIVLFfatgLLTTKD-LNAFPWSIVILAMGGIALGKAVQSSGLLATIARALQRKIENDGTmaILCIFGILMLVVGTFVSHTVSAIIIIPLVQEVG 866
                 6888888888888888888.999*************************************98775445559999999*****99*************** PP

                 xxxxxxxxx....xxxxxxxxxxxxxxxxxxxxx RF
      CitMHS 107 krlkklppl....lliplalaaniggaltpiGtp 136
                  +l++++++    + +   la++ +g l   G p
  CCD23083.1 867 DKLSNKKAApvlvFGC-TLLASAGMG-LASAGFP 898
                 **99999999864333.333333333.3445666 PP

>> Na_sulph_symp  Sodium:sulfate symporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0  33.5   1.4e-24   6.1e-21      27     443 ..     507     913 ..     482     921 .] 0.87

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 1.4e-24
  Na_sulph_symp  27 eskawrllaifiaaivglileplplavialialsllavligvla.........akalsevlsgfssdttlLvfaalliaaavektgLgkRiAlvlv 113
                    ++ + r++a +  ++  +  e++pl ++a++   l+ vl  vl+         ++a s++ s   s+t+++++a++++a a+ + ++ k +A  l+
     CCD23083.1 507 DPVEHRCMALVECVAFLWASEAIPLHITAFLVPLLT-VLFRVLKnddgsvmkaTTASSTIFSSMWSSTIMILLAGFTLAEALSQYNIAKVLASWLL 601
                    667899**********************98765444.56666666779998776777778888889999999************************ PP

  Na_sulph_symp 114 kivGkrt..liLgyalvladlllapatpsntAraggivfpvikslssafgsepekqserkigaylmltvvqsasitsiaflTamApNllllglins 207
                     + G+++    L  + v+ +l++++++ ++   + + + p+++ + ++          +  ++ l+l v+ +a i+++    +  +N++ ++ ++ 
     CCD23083.1 602 AAAGTKPrnVLLMAMGVVFFLSMWISNVAAPVLTYSLLKPILDTMDAS----------KPFAQSLILGVALAANIGGMSSPISSPQNIISMEYLK- 686
                    *******5434455567889********99999999999999987543..........346788**************************99998. PP

  Na_sulph_symp 208 ilgveitwasWflaaiptgvillllvplllyvlyppeikkkeeakavaktelkelGpltarekallilfvlllllWifgesln...idattvaivv 300
                         i w++ f +a+ptg+i++ll++ l+   ++ ++ k     + +kt+      +t+++  ++i+ ++ +llW  + +++    + + +ai+ 
     CCD23083.1 687 --PYGIGWGQFFAVALPTGIISMLLAWGLICLTFKINTSKL-TKFKPIKTR------FTIKQYYVIIVTIGTILLWCVEAQIEgafGSSGQIAILP 773
                    ..6789*********************99988888777777.666677776......689********************999997899******* PP

  Na_sulph_symp 301 lvillllrvldWkDivkqktaWntllllgglialakllersgliewlgnklttslsglspavaiiiilslfvlvhylfaSatAttaallpillava 396
                    +v+ + + +l+ kD   +  +W +++l  g+ial k  + sgl+  ++ +l+ + +   +++ai+ i+ +++lv   f S t    +++p++  v+
     CCD23083.1 774 IVLFFATGLLTTKDL--NAFPWSIVILAMGGIALGKAVQSSGLLATIARALQRKIE-NDGTMAILCIFGILMLVVGTFVSHTVSAIIIIPLVQEVG 866
                    *************86..789*********************************999.89************************************* PP

  Na_sulph_symp 397 qaipg.appllvalllalatslagfllpyatgpnpivfgagylkvkdy 443
                      ++      ++++ ++l  s + + l  a+ pn  + ++ ++k + y
     CCD23083.1 867 DKLSNkKAAPVLVFGCTLLASAG-MGLASAGFPNITAVSMLDNKGNRY 913
                    99987556778889999999987.888888889988888888877766 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.11   5.1e+02      30      37 ..      42      49 ..      32      96 .. 0.63
   2 ?    9.5   3.1   0.00028       1.2      20      54 ..     262     296 ..     242     326 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.11
  CENP-B_dimeris 30 edeedded 37
                    ++++dd+d
      CCD23083.1 42 NNDDDDDD 49
                    12222222 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00028
  CENP-B_dimeris  20 eeeeeedeededeeddedddevpvpsfgeamayfa 54 
                     +   ++++e+ede+d++d d+     f ea  + a
      CCD23083.1 262 DGTGNNNNENEDEDDEDDIDDYDYGEFDEAQDHTA 296
                     22334444444444444445555556666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1216  (0.0678231); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 6121.30
//
Query:       CCD23084.1  [L=386]
Description: hypothetical protein NDAI_0B00500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       575  (0.0320709); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2851.51
//
Query:       CCD23085.1  [L=241]
Description: hypothetical protein NDAI_0B00510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1749.97
//
Query:       CCD23086.1  [L=972]
Description: hypothetical protein NDAI_0B00520, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-14   52.0   0.6    3.6e-13   50.0   0.6    2.1  1  Sir1      Regulatory protein Sir1
    5.7e-09   36.0   0.0    5.4e-08   32.8   0.0    2.1  2  DEAD      DEAD/DEAH box helicase
  ------ inclusion threshold ------
       0.03   13.3   0.3       0.05   12.5   0.3    1.2  1  mTERF     mTERF
       0.11   12.5   0.0       0.46   10.5   0.0    2.1  2  ResIII    Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> Sir1  Regulatory protein Sir1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.6     8e-17   3.6e-13      64     120 .]       2      58 ..       1      58 [. 0.98

  Alignments for each domain:
  == domain 1  score: 50.0 bits;  conditional E-value: 8e-17
        Sir1  64 dskeLFelveteerefyetedgliivnkrtkkkkrkesievrvipirlkkkkvkYLy 120
                 ++keLF++++t e+++y  edg++ivn+rt+k++++ ++++ vip+++k+k++kY+y
  CCD23086.1   2 PCKELFDYCTTVEKNCYVSEDGHQIVNARTPKRFHQLAQKYLVIPLYCKHKRTKYFY 58 
                 79*****************************************************98 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.12   5.5e+02      51      72 ..     115     136 ..      93     148 .. 0.82
   2 !   32.8   0.0   1.2e-11   5.4e-08       8     169 ..     724     882 ..     720     888 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.12
                 EEEESSHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  51 livePtreLaeqtlnnlkkfkk 72 
                  ++e t+eL  q++++++++ +
  CCD23086.1 115 QFIESTHELFLQIYSTVRQRYH 136
                 57999************99865 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 1.2e-11
                 HHHHHTTCEEE.EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   8 iplilgggdvl.vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtp 105
                 +++ l+g +++ ++a  G GKT+ f+ip+++  y   g++++  ++ +P   L  ++  +l++++ ++++   l+++g a  ++++     +d++vgt 
  CCD23086.1 724 VEIYLSGTQIIpIQALPGFGKTALFQIPLVALSY---GEQKTVSFVFVPYVCLLSNMKLRLSSSGINCGILKDLFVNGPAV-EEKNL---FCDVYVGTF 815
                 56677777777799****************8887...788889************************99777788888777.33333...49******* PP

                 HHHHHHH.....HCTSSH.CTTE..EEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxxxx.....xxxxxx.xxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 106 grlddll.....stgkln.lsqv..rflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                   l ++      ++ + n ++++   ++V+DE ++l  + +++ +  r++ ++     + +l  +v+v++ T+
  CCD23086.1 816 NDLGSVEfvrlvNNWY-NiYQDCilGMIVIDEFHNLETEqSYRGQSFRLIPEI-----NFNLAWKVVVMTGTA 882
                 9998844456644344.3477765588*********98878888888888888.....334445699998886 PP

>> mTERF  mTERF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   1.1e-05      0.05     107     170 ..     886     949 ..     874     958 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.1e-05
       mTERF 107 nlvevLrelGvpkkllarllisrpqvlaldlekkvkpkeieekVevlkelglskedvwkilkky 170
                  +v+ ++ +G  k++  +++ ++ ++l +dl++++  k+i +k +v+++  +++++v k++ ++
  CCD23086.1 886 GMVKPMKFIGYDKEMCTSMVSNKNRILYFDLVNQIPLKNIVKKFQVFERSTVAETEVEKLVDRF 949
                 57899999***************************************************99875 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.2   5.4e+03      31      71 ..     465     505 ..     457     528 .. 0.66
   2 ?   10.5   0.0    0.0001      0.46      27     168 ..     734     881 ..     712     884 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.2
                 ESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHH CS
      ResIII  31 maTGtGKTlvaaklierllkkgkeekflflvprkslleqtl 71 
                 + T   KT++a  l+++l kk +   f  +   +++l+ +l
  CCD23086.1 465 IITSYSKTRTANYLCKSLDKKTSDYLFYYIFVARAVLKHAL 505
                 55555699999999999999987765555555555555444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0001
                 EEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH...... CS
      ResIII  27 glikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee..e 122
                 + i++  G GKT +  + l++  + ++k    +++vp   ll+ ++ ++++   ++   +  +v+g   ++   ++  ++++v t + l + +  +  +
  CCD23086.1 734 IPIQALPGFGKTALFqIPLVALSYGEQKTVS-FVFVPYVCLLSNMKLRLSSSGINCGILKDLFVNGPAVEE---KNLFCDVYVGTFNDLGSVEFVRlvN 828
                 4488888999999988778777777766544.455899999999999999999998654666677777777...7778999999999999988555667 PP

                 ....HHHTTT-SEEEEETGGGTTS.T.....TTHHH..HHT---SEEEEEESS CS
      ResIII 123 eeseellrdrfdviiiDEaHrlgakk.....swrei..lekfkeavllglTAT 168
                 ++ + +++    +i+iDE H+l  ++     s+r i  ++ + + +++ +T+T
  CCD23086.1 829 NWYNIYQDCILGMIVIDEFHNLETEQsyrgqSFRLIpeINFNLAWKVVVMTGT 881
                 777777777777************85344447777666666666777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 6243.51
//
Query:       CCD23087.1  [L=862]
Description: hypothetical protein NDAI_0B00550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-08   33.5   0.0    3.2e-07   30.3   0.0    2.1  2  DEAD      DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.048   12.6   0.2      0.079   11.9   0.2    1.3  1  mTERF     mTERF
       0.19   11.7   0.0       0.67    9.9   0.0    1.9  2  ResIII    Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.089   5.3e+02      52      72 ..      26      46 ..       8      58 .. 0.83
   2 !   30.3   0.0   5.3e-11   3.2e-07       8     169 ..     634     792 ..     630     798 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.089
                EEESSHHHHHHHHHHHHHHTT CS
                xxxxxxxxxxxxxxxxxxxxx RF
        DEAD 52 ivePtreLaeqtlnnlkkfkk 72
                ++e t+eL  q++++++++ +
  CCD23087.1 26 FIESTHELFLQIYSTVRQRYH 46
                7899************99865 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 5.3e-11
                 HHHHHTTCEEE.EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   8 iplilgggdvl.vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtp 105
                 +++ l+g +++ ++a  G GKT+ f+ip+++  y   g+ +   ++v+P+  L  ++  +l++++  +++   l+++g a  ++++     +d++vgt 
  CCD23087.1 634 VEIYLSGTQIIpIQALPGFGKTALFQIPLVALSY---GELKDCFICVCPLCCLLSNMKLRLSSSGIDCGILKDLFVNGPAV-EEKNL---FCDVYVGTF 725
                 56677777777799****************8887...677778***********************999767788888777.33333...49******* PP

                 HHHHH.HH....HCTSSHCTTE..EEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxx.xx....xxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 106 grldd.ll....stgklnlsqv..rflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                   l +  +    ++ +  ++++   ++V+DE ++l  + +++ +  r++ ++     + +l  +v+v++ T+
  CCD23087.1 726 NDLGSeNFvrlvNNWYNIYQDCilGMIVIDEFHNLETEqSYRGQSFRLIPEI-----NFNLAWKVVVMTGTA 792
                 66666322344355553377765588*********98878888888888888.....334445699998886 PP

>> mTERF  mTERF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   1.3e-05     0.079     107     167 ..     796     856 ..     784     859 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.3e-05
       mTERF 107 nlvevLrelGvpkkllarllisrpqvlaldlekkvkpkeieekVevlkelglskedvwkil 167
                  +v+ ++ +G  k++  +++ ++ ++l +dl++++  k+i +k +v+++  +++++v+k++
  CCD23087.1 796 GMVKPMKFIGYDKEMCTSMVSNKNRILYFDLVNQIPLKNIVKKFQVFERSTVAETEVGKLV 856
                 57899999*************************************************9987 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.76   4.5e+03      29      71 ..     373     415 ..     366     438 .. 0.67
   2 ?    9.9   0.0   0.00011      0.67      28     168 ..     645     791 ..     622     794 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.76
                 EEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHH CS
      ResIII  29 ikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtl 71 
                 + + T   KT++a  l+++l kk +   f  +   +++l+ +l
  CCD23087.1 373 FDIITSYSKTRTANYLCKSLDKKTSDYLFYYIFVARAVLKHAL 415
                 5555556699999999999999988765555555555555444 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00011
                 EEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH....... CS
      ResIII  28 likmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee..ee 123
                  i++  G GKT +  + l++  + + k + f+ ++p   ll+ ++ ++++   ++   +  +v+g   ++   ++  ++++v t + l +++  +  ++
  CCD23087.1 645 PIQALPGFGKTALFqIPLVALSYGELK-DCFICVCPLCCLLSNMKLRLSSSGIDCGILKDLFVNGPAVEE---KNLFCDVYVGTFNDLGSENFVRlvNN 739
                 477778999998887777777777655.489999999999999998888888887644555577776666...77778999999999999995556677 PP

                 ...HHHTTT-SEEEEETGGGTTS.T.....TTHHH..HHT---SEEEEEESS CS
      ResIII 124 eseellrdrfdviiiDEaHrlgakk.....swrei..lekfkeavllglTAT 168
                 + + +++    +i+iDE H+l  ++     s+r i  ++ + + +++ +T+T
  CCD23087.1 740 WYNIYQDCILGMIVIDEFHNLETEQsyrgqSFRLIpeINFNLAWKVVVMTGT 791
                 77777777777************85344447777766666666777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (862 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 6249.94
//
Query:       CCD23088.1  [L=320]
Description: hypothetical protein NDAI_0B00560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2376.96
//
Query:       CCD23089.1  [L=96]
Description: hypothetical protein NDAI_0B00570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-05   23.3   0.0    7.4e-05   23.0   0.0    1.1  1  DUF5341    Family of unknown function (DUF5341)
  ------ inclusion threshold ------
       0.24   11.4   0.7       0.55   10.3   0.1    1.8  2  Ogr_Delta  Ogr/Delta-like zinc finger


Domain annotation for each model (and alignments):
>> DUF5341  Family of unknown function (DUF5341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   8.3e-09   7.4e-05      51      97 ..       2      46 ..       1      53 [. 0.89

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 8.3e-09
     DUF5341 51 knkslkkrtdrfeveWvSynydnsnsdlakkaeedeglegnfeevee 97
                k+++++kr+++ +++ vSy  dn n  lak a+ed+ le+  e++++
  CCD23089.1  2 KTHNHTKRYNNLDAKRVSYGCDNGNCGLAKIAMEDRALEE--EDYDN 46
                57899********************************998..66654 PP

>> Ogr_Delta  Ogr/Delta-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   6.1e-05      0.55      12      39 ..       6      33 ..       2      36 .. 0.80
   2 ?   -1.3   0.1      0.26   2.3e+03      27      34 ..      51      58 ..      50      62 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.1e-05
   Ogr_Delta 12 rtsrnlskdvreryyqCsnfeCgatfva 39
                 t+r+   d +++ y C+n +Cg   +a
  CCD23089.1  6 HTKRYNNLDAKRVSYGCDNGNCGLAKIA 33
                578888889999***********76655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.26
   Ogr_Delta 27 qCsnfeCg 34
                qC ++ C 
  CCD23089.1 51 QCPDDACD 58
                78888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 709.44
//
Query:       CCD23090.1  [L=339]
Description: hypothetical protein NDAI_0B00575 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2414.50
//
Query:       CCD23091.1  [L=338]
Description: hypothetical protein NDAI_0B00580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2570.23
//
Query:       CCD23092.1  [L=317]
Description: hypothetical protein NDAI_0B00590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2353.56
//
Query:       CCD23093.1  [L=378]
Description: hypothetical protein NDAI_0B00595 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-52  177.9   0.1    6.4e-52  176.3   0.1    1.6  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    0.00024   20.2   0.0    0.00043   19.4   0.0    1.3  1  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.3   0.1   7.2e-56   6.4e-52       2     382 .]       6     373 ..       5     373 .. 0.87

  Alignments for each domain:
  == domain 1  score: 176.3 bits;  conditional E-value: 7.2e-56
                      HHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH........CTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTT CS
  Cys_Met_Meta_PP   2 Tllvhagqekdeqtgavavpiyltstykfkdvdea........fageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailal 87 
                      T+l+h + + + + + va+pi  ++t++f++ +           +  +++ +Y++   p++s +++ +++L gg+ a++++sG +   +a+  +
       CCD23093.1   6 TTLIHGDDKLN-RVTYVAPPINVSTTFRFDSNNLIpanevkdfLQSIDENPVYAKESYPNSSRVQAVLSDLLGGH-AVIYNSGCSFF-HAL--M 94 
                      88999999977.7999**************6655577777764444555589*******************9996.7899***9988.444..3 PP

                      S-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTT CS
  Cys_Met_Meta_PP  88 lkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspll 181
                      ++   +   +d  Y g +++ + ++++ g+e +f d   +ee+++      ++v+lEtp np+    D+e++ + ++ +g+++ +D+t+asp l
       CCD23093.1  95 CHYNPKRFFMDGGYFGVHAIADLLTRNYGLEQQFLDE--IEEFAQ----AGDIVHLETPLNPFGTSSDMEALGERVHTKGAILSIDATLASPPL 182
                      55556677888899999*****************997..566655....578****************************************** PP

                      S-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTS..... CS
  Cys_Met_Meta_PP 182 qrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekh..... 270
                      q + k+gaDi++hSaTKy gGhsd++aGv+vvk+ke+  + +     +lG  +   +++lllr l T ++R+ ++++n  kv  +L+++     
       CCD23093.1 183 QDAWKFGADIILHSATKYSGGHSDLLAGVLVVKTKEQAYELI-EDRIHLGTNIGNLESYLLLRLLSTYEMRIMKQEKNTRKVIIYLNENkskfn 275
                      **********************************66666655.56689***************************************9954332 PP

                      TTEEEEE-TTSTTSTTHHHHHHHSSSG-S.EEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEE CS
  Cys_Met_Meta_PP 271 pkvekvyYpglpshpqhelakkqlkgagg.vlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRl 363
                      + v+k+y+    s+++ ++ +kql+g    v++ +l+s   + k++  +lk f++a+slG++eslie  a+            + ++ + li +
       CCD23093.1 276 KVVNKIYHS---SSQDDDFIQKQLSGLYCpVFAITLHSI-DQCKELPLHLKYFQHATSLGAAESLIEWRAVS-----------DVDIDQCLIGV 354
                      245566655...7788899*******9778999999988.77************************987764...........5678899**** PP

                      E--SS-HHHHHHHHHHHHH CS
  Cys_Met_Meta_PP 364 svGiEdvdDliaDlkqale 382
                      s+G+E++dDli+Dl++al+
       CCD23093.1 355 SIGCENADDLIKDLENALQ 373
                      *****************95 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   4.8e-08   0.00043     138     205 ..     137     203 ..     121     239 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 4.8e-08
                  TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTSS CS
  Aminotran_5 138 ektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghKllgP 205
                  +  ++v++    n  Gt  ++e++g++++ kga++ +Da+ a +  + d  k+g+D++  s+ K+ g 
   CCD23093.1 137 QAGDIVHLETPLNPFGTSSDMEALGERVHTKGAILSIDATLASPPLQ-DAWKFGADIILHSATKYSGG 203
                  55578889999999*************************99998876.999*************9884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2727.36
//
Query:       CCD23094.1  [L=305]
Description: hypothetical protein NDAI_0B00600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-09   37.5   0.1    8.6e-09   35.7   0.0    1.8  2  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       0.1   1.8e+03      73      96 ..      35      57 ..      16      99 .. 0.70
   2 !   35.7   0.0   4.8e-13   8.6e-09       2     142 ..     157     298 ..     156     299 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.1
                     HHHHHHHTTTT..EEEEEEEHHHHHH CS
  CTP_transf_like 73 trevlkklkpd..klylvigadvled 96
                     t+ ++   ++d  +++lv++ ++l +
       CCD23094.1 35 TQITT---NADalDIVLVHDKESLIS 57
                     33333...344556999999888766 PP

  == domain 2  score: 35.7 bits;  conditional E-value: 4.8e-13
                      EEE--TT--HHHHHHHHHHHHHSSESEEEEEESST..HCSST-SCSSTHHHHHHHHHHH.TTCTTEEEEEEESEHH...HHHHHTTTTEEEEEE CS
  CTP_transf_like   2 agGtFDpiHlGHlrlleqakklleedlivgvpsde..ppkkkkkplasaeeRlemlela.kevdevisvdpweltr...evlkklkpdklylvi 89 
                      +gGtFD iH GH  ll +a+ l +  livgv+  e  ++kk+k+ l + + R+ ++  +   v++ ++v+   ++     + +  +++  +lv+
       CCD23094.1 157 LGGTFDHIHDGHKILLTMAAFLTSDRLIVGVTDEEllVNKKYKEQLENFDKRCLNVMTFvHLVKPSLRVEIVPIKDvcgPTGTVPEIE--ALVV 248
                      69**********************99******99933345556************999987777777777777777777999999999..**** PP

                      EHHHHHHHHCHHHHHHHHHHHHHEEEEEEHTTCEEE..EEEECCTTTCSHHHHHH CS
  CTP_transf_like  90 gadvledfsewkeleeilgnvklvvvsrpekqanvl..lkaekrtngiSstkire 142
                      + ++++  +  ++ ++  ++ +l++ +++     vl    ++ ++++ Sst++r+
       CCD23094.1 249 SRETIAGGQVVNDTRQQRKMHPLAIHVVN-----VLggNEEDGWREKLSSTEVRK 298
                      ********99****************998.....5557789999*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2246.08
//
Query:       CCD23095.1  [L=629]
Description: hypothetical protein NDAI_0B00610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-18   64.5   1.8      3e-17   62.6   0.0    2.8  3  MA3              MA3 domain
    1.6e-07   31.2   8.3    1.6e-07   31.2   8.3    2.3  2  MIF4G            MIF4G domain
     0.0067   16.4   3.4     0.0067   16.4   3.4    4.0  4  MNE1             Mitochondrial splicing apparatus component
  ------ inclusion threshold ------
       0.77   10.1   4.6          8    6.9   0.5    3.5  3  Pox_polyA_pol_N  Poxvirus poly(A) polymerase N-terminal domai
        1.5    9.9   4.1         20    6.2   0.2    3.7  4  Myb_DNA-bind_3   Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> MA3  MA3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.42   1.5e+03      37      74 ..      20      61 ..       6      74 .. 0.72
   2 ?   -1.8   0.1      0.81   2.9e+03      56      91 ..     122     157 ..      87     189 .. 0.63
   3 !   62.6   0.0   8.3e-21     3e-17       1     110 [.     306     410 ..     306     413 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.42
                HHHHHHHHHHHS.....SS--HHHHHHHHHHHCC-HHHHHHH CS
         MA3 37 ivkillecalee....sktyneyygllleklceknlilkkqf 74
                 ++  l+ +l +    + +++ey+ + +e++ ++n +l k++
  CCD23095.1 20 MIRNHLNAVLSHidvsKTKNEEYIIQTMEDILQANILLGKDI 61
                455556666666667556777888899999999998888775 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.81
                 HHHHHHHHHCC-HHHHHHHHHHHHHHHHGGGGS-HH CS
         MA3  56 ygllleklceknlilkkqfekgfwdvlesledleld 91 
                 + ++l  l+  ++i+   + +++  +l++++d ++ 
  CCD23095.1 122 MTTFLCALFNYEVIHEIVLLQLLHLLLQDINDFSIQ 157
                 444444455555555555555555555555555555 PP

  == domain 3  score: 62.6 bits;  conditional E-value: 8.3e-21
                 HHHHHHHHHHSSS...SHHHHHHHHHHTT--.TTHHHHHHHHHHHHHHS.SS--HHHHHHHHHHHCC-H.HHHHHHHHHHHHHHHGGGGS-HH...HHH CS
         MA3   1 lrrkifliieeylssgdyeeavsklekLklp.kqeheivkillecaleesktyneyygllleklceknl.ilkkqfekgfwdvlesledleldipeair 97 
                 +++ki+lii+++l     +ea++kl+kL +p + + eiv+i++++ l++  ty+++ygll e+l+++++  +  +f   f +  ++ e  e +   ++r
  CCD23095.1 306 FKKKIYLIIKSSL---SADEAAHKLLKLRIPdDKKFEIVDIIINSSLQD-PTYSKFYGLLSERLISAHSrSWIPAFHSIFVENWKNTENWEPN---QLR 397
                 79***********...*********************************.***************987526889*****************99...*** PP

                 HHHHHHHHHHHTT CS
         MA3  98 nlaefvarlised 110
                 +l++++++l++ +
  CCD23095.1 398 ILGRYWGHLLAVE 410
                 *********9865 PP

>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   8.3   4.4e-11   1.6e-07      20     205 ..      47     244 ..      14     251 .. 0.77
   2 ?   -1.3   0.6      0.38   1.4e+03     101     188 ..     425     511 ..     422     524 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 4.4e-11
                 HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG..GGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       MIF4G  20 ikqllklamdddknelkevielifekaveep..sfsplyarlcgklnsrfqqnFrikllnklqeefekryeleneleenedgnrrrrlglvrflgelfk 116
                 ++++l++++ +    ++ +i+l++e +++    +f + ++++++   + +  + ++ l ++++e ++k           e ++rr    + +fl+ lf+
  CCD23095.1  47 MEDILQANILL---GKDIFISLLIEYQRQYNapEFFTILIKIINSELPNVGLDCSKELTSRFIEKYNK-----------EPQSRRSLFTMTTFLCALFN 131
                 45555555555...667778888555444333399999999999999999999999999999999999...........8888888888899******* PP

                 TTSSEHHHHHHHHHHHHHGGCCCCSCCHSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH......................... CS
       MIF4G 117 lkmltskilldclkellssltketaddppqdleeieilltllttigktlennekakkeldqffkriqkiledat......................... 190
                 ++++++ +ll  l  ll++ ++          ++i+i+ ++l+  gk+l   e +k++ + +f++++ il++                           
  CCD23095.1 132 YEVIHEIVLLQLLHLLLQDIND----------FSIQIIIEILEKSGKKLL--EVSKTAHNMIFEKLREILQSNEfgsspdmineklvslfdkrrlnyes 218
                 ******9999999999999999..........******************..*******************9876666666666666666666666666 PP

                 ...........CSSSSHHHHHHHHHH CS
       MIF4G 191 ...........rqelssrirfmlkdl 205
                            + + +s   fml dl
  CCD23095.1 219 varlfypvvlsKLSPQSPHSFMLNDL 244
                 66666666644444444555666555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.38
                 HHHHHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGCCCCSC.CHSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC CS
       MIF4G 101 rrrrlglvrflgelfklkmltskilldclkellssltketad.dppqdleeieilltllttigktlennekakkeldqffkriqkiled 188
                 ++++ + +r ++ +  ++++ + + +d +k+ +++l+++ +  +p +d e+ ++  + +t ig  +  +e+ +++ld++ ++ qk l++
  CCD23095.1 425 DEETNASNRVFFKFLLQELVAE-MSIDKMKTTMDELKDQLEGlFPTEDIEHMRYSINYFTAIGLGIL-TEDMRERLDTIQEEEQKVLLE 511
                 5666677777888777888777.88888888888888855448888888888888888888888888.888888888888877777765 PP

>> MNE1  Mitochondrial splicing apparatus component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.4     0.019        70      27      66 ..       8      52 ..       1      75 [. 0.70
   2 ?   -0.5   0.2      0.31   1.1e+03       3      52 ..      87     133 ..      85     171 .. 0.63
   3 !   16.4   3.4   1.9e-06    0.0067      29     131 ..     212     318 ..     199     329 .. 0.80
   4 ?    1.8   0.1     0.059   2.1e+02      29      70 ..     425     463 ..     421     478 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.019
        MNE1 27 mkeeeaseslktl...finciLnhl..aveknfggvvsaleklvk 66
                + +e++++++  +   ++n +L+h+  +++kn   +++++e + +
  CCD23095.1  8 LDNEKFQKETWEMirnHLNAVLSHIdvSKTKNEEYIIQTMEDILQ 52
                45566777766663336999***982246789999*****99988 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.31
        MNE1   3 ssklgnvlanl.evlkefieehlkymkeeeaseslktlfinciLnhlavek 52 
                 +s+l+nv++   ++l +++  ++ky ke+++  sl t++  + L+ l  ++
  CCD23095.1  87 NSELPNVGLDCsKELTSRF--IEKYNKEPQSRRSLFTMT--TFLCALFNYE 133
                 6777777765523455555..588888888888877665..3455544444 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 1.9e-06
        MNE1  29 eeeaseslktlfinciLnhlaveknfggvvsaleklvkelnl.qsllnssnligsldnsgfhi.llksvsnSssakltsltLFkfLkks....kfeltk 121
                 ++ + es+ +lf  ++L++l+ ++ ++++++ l+++++   l q  l+s+ l+ ++d++ +h  ll+ +s+S s    s +  + Lk++    ++e+ k
  CCD23095.1 212 RRLNYESVARLFYPVVLSKLSPQSPHSFMLNDLSTMKS-STLdQFQLHSDYLQLQKDYDILHSrLLQQISSS-SEEEQSSKVAEPLKDMtaksEIEFKK 308
                 5667899******************************9.8888999***************9659*****99.66666666666677666656777777 PP

        MNE1 122 sdYlllikaa 131
                 + Yl++ ++ 
  CCD23095.1 309 KIYLIIKSSL 318
                 7776544443 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.059
        MNE1  29 eeeaseslktlfinciLnhlaveknfggvvsaleklvkelnl 70 
                 +ee ++s  + f+  +L++l++e +++++  ++ +l+   +l
  CCD23095.1 425 DEETNAS-NRVFFKFLLQELVAEMSIDKMKTTMDELKD--QL 463
                 4555555.556789*******************99998..44 PP

>> Pox_polyA_pol_N  Poxvirus poly(A) polymerase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2      0.05   1.8e+02      18      53 ..      37      72 ..      20      84 .. 0.76
   2 ?    6.9   0.5    0.0022         8      20      71 ..     136     187 ..     122     197 .. 0.86
   3 ?   -2.0   0.0       1.3   4.6e+03      58      86 ..     194     223 ..     192     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.05
                     -HHHHHHHGGGHHHHHHHHHS-HHHHHHHHHHHHHH CS
  Pox_polyA_pol_N 18 sleeyvvlksqvrniqkilnfdkdiflsLlkknkkk 53
                     + +e +++++    +q  + + kdif+sLl   +++
       CCD23095.1 37 TKNEEYIIQTMEDILQANILLGKDIFISLLIEYQRQ 72
                     5666777777777778888899*******9876665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0022
                      HHHHHHGGGHHHHHHHHHS-HHHHHHHHHHHHHHH-TTSSS-THHHHHHHHH CS
  Pox_polyA_pol_N  20 eeyvvlksqvrniqkilnfdkdiflsLlkknkkkffkdlklseseikkrile 71 
                      +e v+l+  +  +q i+ f  +i +++l+k+ kk+++  k++++ i +++ e
       CCD23095.1 136 HEIVLLQLLHLLLQDINDFSIQIIIEILEKSGKKLLEVSKTAHNMIFEKLRE 187
                      56677788888899**********************9999999999888776 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.3
                      SSS-THHHHHHHHHHTTGGG.C---HHHHH CS
  Pox_polyA_pol_N  58 lklseseikkrileyfskqk.ktkkiGkll 86 
                       ++s + i++++ + f k++ + +++ +l+
       CCD23095.1 194 FGSSPDMINEKLVSLFDKRRlNYESVARLF 223
                      567889999999999999873456777776 PP

>> Myb_DNA-bind_3  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2    0.0057        20      21      56 ..       5      39 ..       1      55 [. 0.76
   2 ?   -2.4   0.0       2.7   9.8e+03      28      44 ..     172     189 ..     156     222 .. 0.56
   3 ?    2.6   0.0     0.077   2.8e+02      36      70 ..     239     273 ..     231     293 .. 0.80
   4 ?   -1.8   0.0       1.9   6.7e+03      26      43 ..     464     481 ..     428     528 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0057
  Myb_DNA-bind_3 21 gnriekktfkkeawkeileefnaktgakytkkqlkn 56
                      + +++ f+ke+w++i +++na   ++ + ++ kn
      CCD23095.1  5 STKLDNEKFQKETWEMIRNHLNAVL-SHIDVSKTKN 39
                    55667899**************955.4555555554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.7
  Myb_DNA-bind_3  28 tfkkeawkeileefna.k 44 
                     +++k a ++i e++++  
      CCD23095.1 172 EVSKTAHNMIFEKLREiL 189
                     455666666666665531 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.077
  Myb_DNA-bind_3  36 eileefnaktgakytkkqlknrlkklrkeyklvke 70 
                      +l+++ + +++  ++ ql + + +l+k+y++  +
      CCD23095.1 239 FMLNDLSTMKSSTLDQFQLHSDYLQLQKDYDILHS 273
                     58889999888999****************98754 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.9
  Myb_DNA-bind_3  26 kktfkkeawkeileefna 43 
                     +  f +e  +++  ++n 
      CCD23095.1 464 EGLFPTEDIEHMRYSINY 481
                     334445555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1617  (0.0901891); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 4400.98
//
Query:       CCD23096.1  [L=371]
Description: hypothetical protein NDAI_0B00620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-10   41.0   1.4    1.7e-10   41.0   1.4    2.4  3  Glyco_hydro_17  Glycosyl hydrolases family 17


Domain annotation for each model (and alignments):
>> Glyco_hydro_17  Glycosyl hydrolases family 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.8     0.041   7.4e+02      82     157 ..      40     114 ..       2     126 .. 0.66
   2 ?   -1.2   0.0     0.068   1.2e+03      62     229 ..     169     201 ..     150     238 .. 0.59
   3 !   41.0   1.4   9.4e-15   1.7e-10     172     302 ..     244     369 ..     179     371 .] 0.75

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.041
  Glyco_hydro_17  82 ekvkikyiavgneispstsaak.avflvpamanirnaltaaglsnkikvstalaldildssyppsqstfreevkpvv 157
                     + v ++ i+  n + p+++aa  a+ +  a +  ++++ + + +  +    a+ +  ++ s   s st++++ + + 
      CCD23096.1  40 KTVTVNAIN-NNVVAPTQVAALdATVVEAAQKDAVADVASPKAAAAVSTQAAVSAAASTAS-TASSSTKSDDSTEMA 114
                     333333332.355677777777677888888889999999999988888888888888888.788888888876555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.068
  Glyco_hydro_17  62 lesnqskaavWvqdnvrpaaekvkikyiavgneispstsaakavflvpamanirnaltaaglsnkikvstalaldildssyppsqstfreevkpv 156
                      +s++ +++v+  d+++  ++ +k++  ++g                                                                
      CCD23096.1 169 TSSQKLFLGVYYVDQIQASVDTIKAAVEKYG---------------------------------------------------------------- 199
                     4444455555555555555555555554444................................................................ PP

  Glyco_hydro_17 157 vdpivvflagtnspllvnvyPYfvysndpsnvsLdyalfqkqslvndnglayrnlfDaildavyaaqekkGgt 229
                                                                                            + 
      CCD23096.1 200 -----------------------------------------------------------------------SW 201
                     .......................................................................33 PP

  == domain 3  score: 41.0 bits;  conditional E-value: 9.4e-15
  Glyco_hydro_17 172 lvnvyPYfvysndpsnvsLdyalfqkqslvn..dnglayrnlfDaildavyaaqekkGgtdielvvsEtGWPsdGstgaslenaatyveNlikkv 264
                     +v v+ +++  n+p      y+ + + ++ +  d++++ ++  D +l+ ++ + ++  g   ++v+ E+GWPs+G+   +++ a+++  N ++ v
      CCD23096.1 244 VVSVDTFISVINNPELC--KYSDYMAVNAHAyfDKNTVAQDSGDWLLQQIQRVWTACDGA-KDVVITESGWPSKGE---TYGVAVPSKANQADAV 332
                     45566677777776665..45544444444444777777788899999999998876444.35799**********...9999*******99999 PP

  Glyco_hydro_17 265 keGtpskpgkgietyvfalFdEnqKpees..vekhfGvfk 302
                     +     k+  g  ty+f +F++ +K + +  vek fG+++
      CCD23096.1 333 NS---IKKVCGSSTYLFTAFNDYWKADGPygVEKYFGILS 369
                     73...34444689**************9999*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1340  (0.0747392); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 2997.21
//
Query:       CCD23097.1  [L=295]
Description: hypothetical protein NDAI_0B00630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-12   47.3   0.2    3.4e-12   46.0   0.2    1.7  1  G-patch         G-patch domain
     0.0034   17.5   0.1     0.0034   17.5   0.1    3.8  3  G-patch_2       G-patch domain
     0.0036   17.2  18.3     0.0051   16.7  18.3    1.3  1  Sigma70_ner     Sigma-70, non-essential region
     0.0056   15.1  28.4     0.0073   14.7  28.4    1.1  1  CDC45           CDC45-like protein
     0.0095   14.6  39.1      0.013   14.1  39.1    1.2  1  TFIIF_alpha     Transcription initiation factor IIF, alpha su
  ------ inclusion threshold ------
       0.16   12.1  10.7        0.3   11.3  10.7    1.4  1  DIRP            DIRP
       0.31    9.5  15.1       0.38    9.2  15.1    1.2  1  RRN3            RNA polymerase I specific transcription initi
        1.4    9.6  37.1       0.76   10.5  33.5    2.1  2  NAM-associated  No apical meristem-associated C-terminal doma
        3.1    4.8  15.4        3.8    4.5  15.4    1.0  1  GREB1           Gene regulated by oestrogen in breast cancer
        3.3    6.6  20.0        4.3    6.3  20.0    1.3  1  SLC12           Solute carrier family 12
        4.4    7.5  10.4        6.7    6.9  10.4    1.4  1  Hydin_ADK       Hydin Adenylate kinase-like domain
        4.4    5.3  23.9        5.8    4.9  23.9    1.0  1  Hid1            High-temperature-induced dauer-formation prot


Domain annotation for each model (and alignments):
>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.2   2.3e-15   3.4e-12       1      45 []      25      70 ..      25      70 .. 0.98

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 2.3e-15
     G-patch  1 tsniGvkmLqkmGWkpGqGLG.kkeqGiaePieakikkdraGlGak 45
                ts++G+k+L+k GW pG+GLG   +q  +++i++ ik+d+ GlGak
  CCD23097.1 25 TSRFGHKLLEKFGWQPGTGLGmLPGQSHKSHIKVHIKDDNLGLGAK 70
                789*****************************************97 PP

>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   2.2e-06    0.0034      16      59 ..      27      71 ..      25      73 .. 0.84
   2 ?   -2.9   5.8       4.9   7.3e+03      32      51 ..     192     210 ..     187     216 .. 0.47
   3 ?   -1.7   5.2       2.1   3.2e+03      34      50 ..     225     245 ..     214     249 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.2e-06
   G-patch_2 16 eFGaAlLrGMGWkegqgigknkkgr.vkpeepkrRpgrlGLGakp 59
                 FG  lL   GW++g+g g    ++ +  ++++ + + lGLGak 
  CCD23097.1 27 RFGHKLLEKFGWQPGTGLGMLPGQShKSHIKVHIKDDNLGLGAKI 71
                6******************876666366778888888******95 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.9
   G-patch_2  32 gigknkkgrvkpeepkrRpg 51 
                 ++gk+kk++ k++++k++++
  CCD23097.1 192 TKGKKKKDK-KERKEKKHKK 210
                 444544443.3333333332 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.1
   G-patch_2  34 gknkkgr....vkpeepkrRp 50 
                 +k+kk++    +k++++++R 
  CCD23097.1 225 EKEKKKQrkkeKKAKKVQKRQ 245
                 333333322335666666664 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7  18.3   3.4e-06    0.0051      32     146 ..     159     283 ..      97     287 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.4e-06
  Sigma70_ner  32 eeeeeeeeeeeedeeeeeee...edddeeeseseaadeeelkeealekfeelreqyeklrk......alkkkgr.kskkyekareelseefkefrLtp 119
                  ++++++++eee+++++++e+    d+d +++ +++ +++++k+e +ek  + r++ +k++k        kkk+r k+kk++k+++  ++ +++ +   
   CCD23097.1 159 DDADDDDDEEEDQKNSDSESdvvSDSDVSSDRKTKGKKKKDKKERKEKKHKKRKLDKKTKKsdknieKEKKKQRkKEKKAKKVQKRQAAFLESSKTAS 256
                  234444444444444444446787777789999999999999999999999999999999999998644444666*********************** PP

  Sigma70_ner 120 kqidrLveqlrslvervraqEreimrl 146
                  k  d+   +l    + ++++   im+ 
   CCD23097.1 257 KIPDSVSTRLSVRSKWIKQKRAAIMDA 283
                  ********************9999986 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7  28.4   4.9e-06    0.0073     125     229 ..     148     251 ..     119     263 .. 0.41

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.9e-06
       CDC45 125 aleeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrsepsakklrrq...lkkerrkyeavlekyy 220
                 + ++ + s+   +e++ +ddddeee+++++++e+d  +d++ s+ +rk+k ++++++++++e+++k+r+ ++++kk++++   +kk++rk+e++ +k  
  CCD23097.1 148 NERKRKYSN---DEDDADDDDDEEEDQKNSDSESDVVSDSDVSS-DRKTKGKKKKDKKERKEKKHKKRKLDKKTKKSDKNiekEKKKQRKKEKKAKKVQ 242
                 222222221...12222222222222222222222222222221.222122222222233333333333333333333333334444444455555555 PP

       CDC45 221 sqgtsyges 229
                 ++ + + es
  CCD23097.1 243 KRQAAFLES 251
                 555554444 PP

>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1  39.1   8.7e-06     0.013     244     366 ..     119     261 ..      87     285 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.7e-06
                  X.................XXXXXXXXX....XXXXXXXXX...XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX CS
  TFIIF_alpha 244 k.................kkkaknkkkldddkkkkrgsdd...dadeydsddGddegrEldyisDdsasendpe.eredkkseEeeekkeieqdedee 320
                                    ++k+k  k++ +++k+k  +d+   d+d+++ +d  + + E d +sD++ s++ +   +++k ++E +ekk+++++ d++
   CCD23097.1 119 SgkwgihflkgevlastwDPKTKKLKSYSNERKRKYSNDEddaDDDDDEEEDQKNSDSESDVVSDSDVSSDRKTkGKKKKDKKERKEKKHKKRKLDKK 216
                  1555555555555555557788888997777777766666212333444555556678999**99987663332355555666666666655544444 PP

                  XXXXXXX..XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX CS
  TFIIF_alpha 321 ekeeekk..eeegklskkkkkakklkkkkkekdkkdSddeedsddsDi 366
                   k ++k+  +e+ k+ kk+kkakk +k+++     +S +++ s   D+
   CCD23097.1 217 TKKSDKNieKEKKKQRKKEKKAKKVQKRQAAF--LES-SKTASKIPDS 261
                  44333331034445667778888877777776..566.4444444444 PP

>> DIRP  DIRP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  10.7    0.0002       0.3      29     100 ..     198     271 ..     187     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
        DIRP  29 trrltraewrkirrllgkpRrfSeaFleeEreeLeqkRekiRelqqrkve..dleqllkdlpkeiplpLevgtk 100
                   + +r+e ++ +r+l k ++ S++ +e+E+++  +k +k +++q+r+ +  +++++ +++p+++  +L+v  k
  CCD23097.1 198 KDKKERKEKKHKKRKLDKKTKKSDKNIEKEKKKQRKKEKKAKKVQKRQAAflESSKTASKIPDSVSTRLSVRSK 271
                 556789999999***********************************88888888899***********99766 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  15.1   0.00026      0.38     217     309 ..     158     240 ..      84     255 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00026
        RRN3 217 ledlddeedeeleeeleededdedddedd........eesdlddlssdeeaeedeekdeeeeslkkikelvekLDailtllfehlekkfssestkeeee 307
                  +d dd++dee+                d        +  +++d+ssd++ +++++  +++++ k+ k+  +kLD+  +   + +ek+ +++ +ke++ 
  CCD23097.1 158 EDDADDDDDEEE----------------DqknsdsesDVVSDSDVSSDRKTKGKKK--KDKKERKEKKHKKRKLDKKTKKSDKNIEKEKKKQRKKEKKA 238
                 222222222211................1222222223445555556655555543..223456888999999**999999999999444444333333 PP

        RRN3 308 ee 309
                 ++
  CCD23097.1 239 KK 240
                 33 PP

>> NAM-associated  No apical meristem-associated C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.97   1.5e+03      87     107 ..      72     115 ..      68     118 .. 0.70
   2 ?   10.5  33.5   0.00051      0.76      26     139 ..     144     291 ..     134     295 .] 0.58

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.97
  NAM-associated  87 krke.......................askdeealeklasaqkk 107
                     kr+e                       + k+ee +++l++++k+
      CCD23097.1  72 KRQErkdefdngecagldvfqrilgrlNGKEEEIVDELEKQRKD 115
                     44444466777777777777777777788899999999999987 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00051
  NAM-associated  26 kkk.rkpkssassspatsssestdee.dssesssesseesaadsestsssrlkRPiGkkkaKekrke....askdeealeklasaqkkiakkske 114
                     k   +++k + s+ +++ ++  +dee d+++s+ses+ +s++d +s+++++ k+ + kk+ Kek+ +    ++k +++ +++++++kk +kk+k+
      CCD23097.1 144 KSYsNERKRKYSNDEDDADD-DDDEEeDQKNSDSESDVVSDSDVSSDRKTKGKKKKDKKERKEKKHKkrklDKKTKKSDKNIEKEKKKQRKKEKK 237
                     32221222222222222222.23333355666666666666666666666666666666666555445556777777777788777777777777 PP

  NAM-associated 115 kkee.ae............................leekkldieeekveaeqrq 139
                     +k+  +                             +++k++ i+++k+  e+++
      CCD23097.1 238 AKKVqKRqaaflessktaskipdsvstrlsvrskwIKQKRAAIMDAKALNEIFM 291
                     775533377888888888888888888877777777777777777777666555 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  15.4    0.0025       3.8    1095    1200 ..     155     257 ..     120     292 .. 0.31

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0025
       GREB1 1095 sdaeklsstdnedeelqedgerpksnssavqstsdsvaadaaeessktspvkvekseskdavesgl...sskasakselseasaaaasaseeakspk 1188
                  s+ e ++  d ++ee q++++++    s+v s sd v++d +++ +k++++k +k++++++ +  +   +s+++ ++e ++ +++++ + ++ ++ +
  CCD23097.1  155 SNDEDDADDDDDEEEDQKNSDSE----SDVVSDSD-VSSDRKTKGKKKKDKKERKEKKHKKRKLDKktkKSDKNIEKEKKK-QRKKEKKAKKVQKRQ 245 
                  12222222222222222222222....22211111.122222222222211222222222221111000122222221111.111111111111111 PP

       GREB1 1189 asvtseeeesee 1200
                  a+  ++++++++
  CCD23097.1  246 AAFLESSKTASK 257 
                  111111111111 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  20.0    0.0029       4.3     137     221 ..     165     250 ..     107     283 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0029
       SLC12 137 eeekekkeaeesekeeeekkkakkkklle...................ekskekeekekleekdsnlslseekkeeekekkkekkkkkekkeklkkkek 216
                 ++           +ee++k++                           +k+k k+e++++++k+ +l+ +++k++++ ek+k+k++kkekk k+ +k++
  CCD23097.1 165 DD-----------EEEDQKNS-------DsesdvvsdsdvssdrktkgKKKKDKKERKEKKHKKRKLDKKTKKSDKNIEKEKKKQRKKEKKAKKVQKRQ 245
                 11...........11111111.......01112222233323322221111122222222222222222222222222222222222333333332233 PP

       SLC12 217 slllk 221
                 + +l+
  CCD23097.1 246 AAFLE 250
                 33222 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  10.4    0.0045       6.7      66     158 ..     168     270 ..     103     279 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0045
   Hydin_ADK  66 eeaaeeaekkegq...lsvealvkktselssaaeekaas.......skiskkkkts.vvsgkkkaesegaksqkqkekktseta.......qisssppl 146
                 ee+++++++   +   +s   + ++ + + + ++ k+++        k+ kk+k+s    +k+k+++ +++++ +k       +         ss+ ++
  CCD23097.1 168 EEDQKNSDS---EsdvVSDSDVSSDRKTKGKKKKDKKERkekkhkkRKLDKKTKKSdKNIEKEKKKQRKKEKKAKK-------VqkrqaafLESSKTAS 256
                 111222221...1223333333333332222222211111111112222222221101111222222222222222.......1333333344555544 PP

   Hydin_ADK 147 aa..piarrLsvsa 158
                 +    ++ rLsv +
  CCD23097.1 257 KIpdSVSTRLSVRS 270
                 44335678888865 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  23.9    0.0039       5.8     566     708 ..     130     275 ..     126     282 .. 0.50

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0039
        Hid1 566 kvfealrnltlesaseeiersnesarldsideeeeenssessrieesrsesrspslsevpel..ksslaitddeskaereksatessssqavs...qlr 659
                 +v+ ++++ ++++ +++ ++++++ + d+ d +++  ++e+++ + s+s+   +s s+v++   ++  +++d+++++e+++++++ +++  +s    ++
  CCD23097.1 130 EVLASTWDPKTKKLKSYSNERKRKYSNDEDDADDDDDEEEDQKNSDSESD--VVSDSDVSSDrkTKGKKKKDKKERKEKKHKKRKLDKKTKKSdknIEK 226
                 67778888888888888888888333333333333323222222222222..23333333220022222222222222222222222222222332344 PP

        Hid1 660 emsekarakesaesteesrqesatskkspsgmsqsaeekftptsewles 708
                 e +++++++++a++ ++ +++  +s+k++s+++ s++ ++   s+w+++
  CCD23097.1 227 EKKKQRKKEKKAKKVQKRQAAFLESSKTASKIPDSVSTRLSVRSKWIKQ 275
                 4555555555555556666666788889999999999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3830  (0.21362); expected 358.6 (0.02)
Passed bias filter:                      805  (0.0448993); expected 358.6 (0.02)
Passed Vit filter:                       355  (0.0198003); expected 17.9 (0.001)
Passed Fwd filter:                        98  (0.005466); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.24u 0.33s 00:00:01.57 Elapsed: 00:00:00.51
# Mc/sec: 1744.79
//
Query:       CCD23098.1  [L=1491]
Description: hypothetical protein NDAI_0B00640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-82  277.0  40.6      2e-47  162.1  13.6    2.3  2  ABC_membrane  ABC transporter transmembrane region
    2.9e-47  160.6   5.7    4.2e-29  101.8   0.1    3.9  2  ABC_tran      ABC transporter
    8.3e-10   38.5   0.1     0.0097   15.4   0.0    4.5  2  SMC_N         RecF/RecN/SMC N terminal domain
    1.7e-07   31.4   9.8      0.031   14.1   0.0    5.7  6  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    1.2e-06   28.1   1.4      0.037   13.8   0.1    2.5  2  AAA_29        P-loop containing region of AAA domain
    1.5e-05   25.0   0.7      0.049   13.5   0.2    2.7  2  RsgA_GTPase   RsgA GTPase
    6.3e-05   23.5   1.8      0.033   14.7   0.0    3.1  2  AAA_18        AAA domain
    7.8e-05   23.0   0.5        1.8    8.9   0.0    3.6  3  AAA_22        AAA domain
    9.4e-05   21.6   0.0     0.0077   15.3   0.0    2.3  2  T2SSE         Type II/IV secretion system protein
    0.00012   22.2   0.7       0.11   12.6   0.0    2.8  2  MMR_HSR1      50S ribosome-binding GTPase
    0.00019   22.0   6.4     0.0034   17.9   4.1    4.3  3  AAA_23        AAA domain
    0.00042   20.1   0.7       0.55    9.9   0.0    2.9  3  AAA_30        AAA domain
     0.0016   17.8   0.0       0.12   11.6   0.0    2.4  2  Zeta_toxin    Zeta toxin
     0.0018   17.9   0.1        1.8    8.0   0.0    2.6  2  AAA_7         P-loop containing dynein motor region
     0.0057   16.5   0.0        6.2    6.5   0.0    3.0  3  ATP_bind_1    Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
      0.015   15.4   0.0        3.2    7.9   0.0    2.9  2  AAA_33        AAA domain
      0.016   15.0   0.5        3.4    7.3   0.0    3.0  2  IstB_IS21     IstB-like ATP binding protein
      0.016   14.6   0.2        5.1    6.4   0.0    2.6  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.016   15.2   0.2        3.4    7.7   0.0    3.5  3  AAA_5         AAA domain (dynein-related subfamily)
      0.018   14.9   8.5      0.018   14.9   0.0    3.5  2  AAA_11        AAA domain
      0.018   15.5   0.1         17    5.8   0.0    3.7  3  RNA_helicase  RNA helicase
      0.022   14.8   0.4       0.72    9.9   0.1    2.6  2  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
      0.023   14.5   0.3         10    5.9   0.0    3.6  3  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
      0.026   14.9   1.5       0.45   10.9   0.0    3.5  3  AAA           ATPase family associated with various cellular 
      0.034   13.7   0.2        2.4    7.7   0.0    2.4  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.047   14.1   0.1        2.3    8.6   0.0    2.7  2  AAA_16        AAA ATPase domain
      0.077   12.6   0.2        2.1    7.9   0.0    2.4  2  AAA_25        AAA domain
        0.1   12.8   0.3         19    5.5   0.1    2.8  2  Roc           Ras of Complex, Roc, domain of DAPkinase
        0.1   12.8   0.5        3.8    7.7   0.0    2.8  2  AAA_28        AAA domain
       0.16   11.6   0.2        2.4    7.7   0.1    2.3  2  SRP54         SRP54-type protein, GTPase domain
       0.17   12.0   0.0       0.17   12.0   0.0    2.7  2  DUF87         Helicase HerA, central domain
       0.18   11.8  11.2       0.54   10.3   0.0    4.0  3  Dynamin_N     Dynamin family
        0.5    9.9   4.4        3.1    7.3   0.1    2.8  2  AAA_27        AAA domain


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5  19.0   1.8e-37   9.9e-35       2     271 ..     232     502 ..     231     505 .. 0.97
   2 !  162.1  13.6   3.7e-50     2e-47       3     267 ..     916    1176 ..     914    1183 .. 0.96

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 1.8e-37
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHCSTHHHHHHS CS
  ABC_membrane   2 iliillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyll...nvtgerlskrlrrklfkkilrqpmsffdtn 95 
                   ++++l+a+la ++s l+p++++r+++++ +k+    +++n+ + + +++++++f+ +l+ ++++     tg +++  l + +++k++r +     + 
    CCD23098.1 232 FVATLFAVLANCTSGLNPMITKRLIQFVEEKAFFPHMHVNKGIGYAIGACIMMFLNGLFFNHFFhasQLTGVQAKAILTKAALDKMFRTSNYGKHKF 328
                   6899**************************9888889***************************99888********************77777779 PP

                   CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  ABC_membrane  96 svGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirt 192
                   + G+++s +t+d+s+++ +++++ +l+  ++++ ++++++++ lg  ++lv+++++++ +++  +i k +  l+ k +k+++ + ++++E+l+++++
    CCD23098.1 329 PNGKVTSFVTTDLSRIEFAISFQPFLMGFPVILAICVVLLIVNLGA-IALVGIGVFFMAFFLCLFIFKSILGLRVKANKYTDARVTLMREILNNMKM 424
                   **********************************************.69************************************************ PP

                   HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHH CS
  ABC_membrane 193 VkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailf 271
                   Vk++++e+++++++++ ++++    +k++++++++i+ + +l++++ +++ +++++ v +   ++g++++ lslf +l+
    CCD23098.1 425 VKYYAWEDAYEKNIQDLRTKEIITVRKMQFIRNFIIALAIALPSIASLVT-FLAMYKVNNMGRTPGNIFASLSLFQVLS 502
                   **********************************************9999.88*******99*************9987 PP

  == domain 2  score: 162.1 bits;  conditional E-value: 3.7e-50
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCH CS
  ABC_membrane    3 liillailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsv 97  
                    +++ll+i++++++++ +++l++++++ +++ ++++     y+ l+ ++++a  +++  q++ll+ +g+r+sk+l  k++++il+ pms+ dt++ 
    CCD23098.1  916 FYLLLIIITTFCQLFSSVWLSYWTEDKFKNRSTSF-----YMGLYSFFVFAGYLFTSSQFTLLCAIGIRASKWLNLKAVHRILHTPMSYLDTTPL 1005
                    6899************************9666666.....******************************************************* PP

                    HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  ABC_membrane   98 GellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirt 192 
                    G++l+r+t+d+++l++ l+e++ l++   +++vg++++++++ +++++++ ++++ + l++  + ++ +++k+ e  +++ +++ ++E+l g+ t
    CCD23098.1 1006 GRILNRFTKDTDSLDNELTESIRLMLFQTANIVGVCVMCIIYLPWFAIAIPFLFIGFTLITDHYQSTGREVKRLEAIQRSFVYNNFNEILGGMDT 1100
                    *********************************************************************************************** PP

                    HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.TSSTHHHHHHHHHHH CS
  ABC_membrane  193 VkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvis.gelsvgdlvvflslf 267 
                    +k++g ee+fl k +  ++++++ag+ +  +++++ ++++l++ ++ ++++++++t   + +++svg l+++++ +
    CCD23098.1 1101 IKSYGSEERFLAKSDYLINKMNEAGYLSVALQRWVAIFLDLVAVCFALIITLLCVTRAFHiSAVSVGVLLTYVLQL 1176
                    ****************************************************9999999999*****999988765 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   2.7e-18   1.5e-15       2     134 ..     628     758 ..     627     761 .. 0.76
   2 !  101.8   0.1   7.6e-32   4.2e-29       1     137 []    1247    1412 ..    1247    1412 .. 0.91

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 2.7e-18
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTCHHHHHHHSTTGG.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvrenesdeeiekalsklglke.. 96 
                 ++++l++k+ge + +vG+ G+GK+++l++lag +++teG+i+++g+ l               ++ q++++ +++  ++ +++++ e++l+  +l+   
  CCD23098.1 628 HDITLDIKKGEFIIMVGPIGTGKTSFLNALAGFMNKTEGRIQVNGDLLLCgyP----------WI-QNATVRDNILFGSPYDKKKYEEVLRCCSLEAdl 715
                 799**************************************999776666332..........22.222333334344445555555555555555544 PP

                 .....TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEES CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  97 .....lkdtvvksspssLSgGqkqrvalarallkkpkllllDE 134
                       + t +++++ +LSgGqk r+ lar++ kk++++l+D+
  CCD23098.1 716 dilpaGDSTEIGERGITLSGGQKARINLARCVYKKKDIYLFDD 758
                 444444588899999***************************8 PP

  == domain 2  score: 101.8 bits;  conditional E-value: 7.6e-32
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79  
                  lk+++l++k gek++i G++GaGKSt++++l++l +  +Geil+d+ d+++  l  lr++++++pq+p lf+++ +r+n                  
  CCD23098.1 1247 LKDLDLDIKSGEKIGICGRTGAGKSTIMSALYRLNEISQGEILIDNVDISKLGLYDLRRKLAIIPQDPVLFRGT-IRKNldpfnehdddllwdslvr 1342
                  799***********************************************************************.*********9999999999999 PP

                  ...........HHHTCHHHHHHHSTTGG.TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  ...........xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   80 ...........esdeeiekalsklglke.lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                              ++++++k  ++ ++ +   d+ v+++++++S G++q +al ral++++k+l+lDE+t+
  CCD23098.1 1343 ggaieraalnkIKNQKVDKDGTHADMFKfHLDQLVEEEGANFSLGERQLLALTRALVRQAKVLILDEATS 1412
                  998888888876666677766666665535688888889*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.8e-05     0.026     109     208 ..     194     801 ..     187     807 .. 0.77
   2 !   15.4   0.0   1.8e-05    0.0097     118     210 ..     836    1453 ..     829    1460 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.8e-05
                 EEEEETTEEE-HHHHHHHHHCTT-STT........................................................................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................................ RF
       SMC_N 109 seykingkevtkkevsellesagiske........................................................................ 135
                  +y i+  ++t++e+ + l   +++                                                                          
  CCD23098.1 194 KKYLIDHPNATEEELVHHLTLPKMTVIrallftfkrqyfvatlfavlanctsglnpmitkrliqfveekaffphmhvnkgigyaigacimmflnglffn 292
                 566666666666666666665555555556666666677777777777777777777777777777777777777777777777777777777777777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCD23098.1 293 hffhasqltgvqakailtkaaldkmfrtsnygkhkfpngkvtsfvttdlsriefaisfqpflmgfpvilaicvvllivnlgaialvgigvffmafflcl 391
                 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCD23098.1 392 fifksilglrvkankytdarvtlmreilnnmkmvkyyawedayekniqdlrtkeiitvrkmqfirnfiialaialpsiaslvtflamykvnnmgrtpgn 490
                 777777777777777777777777777777777777777777777777777777777778888888888888888888888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCD23098.1 491 ifaslslfqvlsiqmfflpiaiatgidmviglgrlqdllvapendpnitkerapspdldpsialkldntsfewenyelleseekkleeasndklkkkkk 589
                 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCD23098.1 590 kgnnnkskkeeeqvvktnesapnntekledgkiqfsgfhditldikkgefiimvgpigtgktsflnalagfmnktegriqvngdlllcgypwiqnatvr 688
                 88888888888888888999999999999999999999999999999999999********************************************** PP

                 ...........................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHH.HHHHHCTTS CS
                 ...........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
       SMC_N 136 ...........................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvae.llkekskna 190
                                                            +LSgG+k+ + la       +k++ +yl+D++ +a D +  k + +  +    kn 
  CCD23098.1 689 dnilfgspydkkkyeevlrccsleadldilpagdsteigergiTLSGGQKARINLA----RCVYKKKDIYLFDDVLSAVDSRVGKHIMDeCFLGLLKNE 783
                 **************************************************977765....55899999************9877766541444555555 PP

                 EEEEE-SSHHHCCC-SCE CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N 191 Qfivislreemlekadkl 208
                   i  +++  +le+a+++
  CCD23098.1 784 TRILATHQLSLLERASRV 801
                 566666666666666655 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.8e-05
                  E-HHHHHHHHHCTT-STT............................................................................... CS
                  xxxxxxxxxxxxxxxxxx............................................................................... RF
       SMC_N  118 vtkkevsellesagiske............................................................................... 135 
                   ++++ ++++e+++++k                                                                                
  CCD23098.1  836 SKEEDTENIMEEEEFEKAertfteinelekqmtqkskdpsvivngntmlkeeravnsigwnvykaylsagvgkwgfilipfyllliiittfcqlfss 932 
                  5555555555555555555555555555555555566666666666666666666666666666666666666666666777777777777777777 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23098.1  933 vwlsywtedkfknrstsfymglysffvfagylftssqftllcaigiraskwlnlkavhrilhtpmsyldttplgrilnrftkdtdsldneltesirl 1029
                  7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23098.1 1030 mlfqtanivgvcvmciiylpwfaiaipflfigftlitdhyqstgrevkrleaiqrsfvynnfneilggmdtiksygseerflaksdylinkmneagy 1126
                  7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23098.1 1127 lsvalqrwvaifldlvavcfaliitllcvtrafhisavsvgvlltyvlqlpgllngvlraltqtendmnsaerlvsyatelpleaayrrpevsppen 1223
                  7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23098.1 1224 wpsegkiefkhvdfsyrpglpivlkdldldiksgekigicgrtgagkstimsalyrlneisqgeilidnvdisklglydlrrklaiipqdpvlfrgt 1320
                  7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777788888888 PP

                  ..............................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTT CS
                  ..............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ..............................................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaa 170 
                                                                                ++S Ge++L+al        v++a + +lDe  + 
  CCD23098.1 1321 irknldpfnehdddllwdslvrggaieraalnkiknqkvdkdgthadmfkfhldqlveeegaNFSLGERQLLALTRA----LVRQAKVLILDEATSS 1413
                  88888888888888888888888888888888888888888888888888888888999999*********887543....4788999********* PP

                  S-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  171 LDeknvkkvaellkeksknaQfivislreemlekadklvg 210 
                   D +   k+  ++ ++  ++ +++i++r +++ + d+++ 
  CCD23098.1 1414 VDYETDGKIQARIVKEFGDCTILCIAHRLNTILNYDRILV 1453
                  **********99999999*************999998865 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.3       1.1   6.2e+02     120     236 ..       9     126 ..       4     127 .. 0.90
   2 ?   -3.1   0.0       9.5   5.2e+03     268     285 ..     245     262 ..     244     263 .. 0.90
   3 ?    5.6   0.1     0.022        12       1      22 [.     639     660 ..     639     683 .. 0.82
   4 ?    1.5   0.0      0.38   2.1e+02     256     303 .]     750     796 ..     741     796 .. 0.79
   5 !   10.6   0.1   0.00065      0.35       3      26 ..    1261    1293 ..    1260    1325 .. 0.69
   6 !   14.1   0.0   5.7e-05     0.031     219     287 ..    1353    1435 ..    1300    1446 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.1
      AAA_21 120 ggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrke.rigllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlr 217
                 g +  +s++++s s++++ ++++ + + + +  ++ ++ +    + ++     +++  ++a+ + ll   + +++++ +e +++ + +e+ +++ +  +
  CCD23098.1   9 GAAHTESAANHSSSSSSSSHSSSSASNQIQTSKKYIPSIEVNSGMsESISKTQSNNSSNGADSNSLLPTGEYKVNRNKPETYLNSDDIEKVTDSELFVQ 107
                 56678999999999999999999999999999999999988888899999999999999999**********************999999999999999 PP

      AAA_21 218 ergvvflengdgqelpare 236
                  r + fl+ ++  e+p+++
  CCD23098.1 108 KRIFSFLHTKKIPEVPSND 126
                 9999999999999998876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.5
      AAA_21 268 ngLHPkllrrllellkel 285
                 +gL+P +++rl+++++e+
  CCD23098.1 245 SGLNPMITKRLIQFVEEK 262
                 89************9876 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.022
      AAA_21   1 lnvliGpNgsGKSnLLdaldll 22 
                 + +++Gp g+GK+++L al ++
  CCD23098.1 639 FIIMVGPIGTGKTSFLNALAGF 660
                 57899**************876 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.38
      AAA_21 256 kkgsllliDEpEngLHPkllrrll.....ellkelsrngaQviltTHSpllld 303
                 kk +++l+D++ +  + ++ ++++     +llk+++r     il+TH+ +ll+
  CCD23098.1 750 KK-DIYLFDDVLSAVDSRVGKHIMdecflGLLKNETR-----ILATHQLSLLE 796
                 34.99999999999999777777764334777*****.....******99985 PP

  == domain 5  score: 10.6 bits;  conditional E-value: 0.00065
      AAA_21    3 vliGpNgsGKSnLLdaldllarl.........d 26  
                  ++ G+ g+GKS+++ al+ l  +          
  CCD23098.1 1261 GICGRTGAGKSTIMSALYRLNEIsqgeilidnV 1293
                  689*****************7665333333333 PP

  == domain 6  score: 14.1 bits;  conditional E-value: 5.7e-05
      AAA_21  219 r.............gvvflengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHP....kllrrllellkelsr 287 
                  +             +++ ++ ++  e   +++S G ++llal  al r++   ++l++DE  ++ ++    k+++r+++ + +++ 
  CCD23098.1 1353 KiknqkvdkdgthaDMFKFHLDQLVEEEGANFSLGERQLLALTRALVRQA---KVLILDEATSSVDYetdgKIQARIVKEFGDCTI 1435
                  03333344455566899999999999999999******************...9************************99977765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   6.7e-05     0.037      11      46 ..     626     661 ..     622     672 .. 0.73
   2 !   12.7   0.1   0.00015     0.079      17      43 ..    1252    1278 ..    1247    1281 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.7e-05
      AAA_29  11 tfdghtieidlkg.atlltGpsGsGKSTllDAiqalL 46 
                  f++ t++i+  g +++++Gp+G+GK+++l A++  +
  CCD23098.1 626 GFHDITLDIKK-GeFIIMVGPIGTGKTSFLNALAGFM 661
                 45566666664.359999**************98666 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00015
      AAA_29   17 ieidlkgatlltGpsGsGKSTllDAiq 43  
                  ++i+  + + + G++G+GKST++ A+ 
  CCD23098.1 1252 LDIKSGEKIGICGRTGAGKSTIMSALY 1278
                  5566444888*************9975 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.2   8.9e-05     0.049      77     129 ..     614     667 ..     587     673 .. 0.72
   2 !    8.8   0.0    0.0025       1.4     100     130 ..    1258    1288 ..    1244    1292 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.9e-05
                  SEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase  77 yevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktge 129
                  +e l   + + +g+++++  +k+ +++++vG+ G GK++++nal++ ++   g 
   CCD23098.1 614 TEKLEDGKIQFSGFHDITLDIKKgEFIIMVGPIGTGKTSFLNALAGFMNKTEGR 667
                  4445555556678888888888889*******************9977665555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0025
                   SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  100 ktsvlvGqSGvGKStLinallpelelktgev 130 
                   + + ++G +G+GKSt++ al   +e++ ge+
   CCD23098.1 1258 EKIGICGRTGAGKSTIMSALYRLNEISQGEI 1288
                   66679**************988767766665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.015         8       1      19 [.     640     658 ..     640     705 .. 0.78
   2 !   14.7   0.0     6e-05     0.033       1      67 [.    1260    1331 ..    1260    1375 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.015
      AAA_18   1 IlltGtpGvGKttlakeLs 19 
                 I+  G++G+GKt++ ++L+
  CCD23098.1 640 IIMVGPIGTGKTSFLNALA 658
                 8899*************95 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6e-05
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf..gvnlrdvakenglllevdpe...aldeskrldedkldklldaleen 67  
                  I+++G  G+GK+t+  +L +++++  g++l+d++  + l l++       +++  +l ++   k+ld ++e+
  CCD23098.1 1260 IGICGRTGAGKSTIMSALYRLNEIsqGEILIDNVDISKLGLYDLRRklaIIPQDPVLFRGTIRKNLDPFNEH 1331
                  89******************9988999999998865555444444433545555555555555555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.013       7.3       4      26 ..     636     658 ..     632     673 .. 0.86
   2 !    8.9   0.0    0.0033       1.8      10      31 ..    1262    1283 ..    1255    1325 .. 0.80
   3 ?    2.9   0.1      0.23   1.3e+02      80     102 ..    1392    1412 ..    1356    1446 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.013
      AAA_22   4 tagilvvtGesGtGKTtllrrll 26 
                 +  +++ +G+ GtGKT  l+ l+
  CCD23098.1 636 KGEFIIMVGPIGTGKTSFLNALA 658
                 67899************999886 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0033
      AAA_22   10 vtGesGtGKTtllrrlleqlde 31  
                  ++G +G+GK+t +  l + +++
  CCD23098.1 1262 ICGRTGAGKSTIMSALYRLNEI 1283
                  8*************99998754 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.23
      AAA_22   80 ealeqalraravielliiDEaqh 102 
                   al++al ++a+  +li+DEa  
  CCD23098.1 1392 LALTRALVRQAK--VLILDEATS 1412
                  578888999988..******965 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.4e-05    0.0077     126     161 ..     634     669 ..     597     674 .. 0.83
   2 ?    3.7   0.0     0.049        27     126     151 ..    1254    1279 ..    1234    1294 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.4e-05
       T2SSE 126 vrerglilvsGgTgsGKttllyallkeinksderiv 161
                 +++   i++ G+ g+GKt +l+al  ++nk++ ri 
  CCD23098.1 634 IKKGEFIIMVGPIGTGKTSFLNALAGFMNKTEGRIQ 669
                 56778899***********************99985 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.049
       T2SSE  126 vrerglilvsGgTgsGKttllyallk 151 
                  +++   i + G Tg GK+t++ al  
  CCD23098.1 1254 IKSGEKIGICGRTGAGKSTIMSALYR 1279
                  5566678899**********998743 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1     0.011       5.7       2      22 ..     640     660 ..     639     671 .. 0.82
   2 !   12.6   0.0    0.0002      0.11       1      21 [.    1259    1279 ..    1259    1292 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.011
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 ++ vG   +GK++++nal g 
  CCD23098.1 640 IIMVGPIGTGKTSFLNALAGF 660
                 789***************984 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.0002
                  EEEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltg 21  
                  +++i Gr+ +GKSt+++al +
  CCD23098.1 1259 KIGICGRTGAGKSTIMSALYR 1279
                  699***************976 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4       3.3   1.8e+03      78     141 ..      46     117 ..       8     200 .. 0.54
   2 !   17.9   4.1   6.2e-06    0.0034       7     197 ..     624     872 ..     612     874 .. 0.67
   3 !   14.1   0.0   9.3e-05     0.051      21      39 ..    1259    1277 ..    1239    1278 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3.3
      AAA_23  78 tfenkdgrytrsiererelskkkgkttkkaklellei...deleqfisellgskki..........ilnlilflgqe 141
                 ++e ++g     ++++++++++++++   +  +ll +   + ++++ +++l+s++i          + ++++fl+ +
  CCD23098.1  46 SIEVNSG-----MSESISKTQSNNSSNGADSNSLLPTgeyKVNRNKPETYLNSDDIekvtdselfvQKRIFSFLHTK 117
                 2333445.....55555555555544444444433334556667777778887777433333333333333333333 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 6.2e-06
      AAA_23   7 frsfrdqeidFskg.ltlItGpNGaGKTTildAiklaLygetprlsrks..........grgfeksdveiesegkvkayvelt................ 78 
                 f  f+d ++d +kg + + +Gp G+GKT++l+A+   +    +r   +           ++  +++ + ++s  ++k+y e+                 
  CCD23098.1 624 FSGFHDITLDIKKGeFIIMVGPIGTGKTSFLNALAGFMNKTEGRIQVNGdlllcgypwiQNATVRDNILFGSPYDKKKYEEVLrccsleadldilpagd 722
                 55678888888886155669***************999998888888779*******987778888888888877777766666666555555555554 PP

      AAA_23  79 ......fenkdgry.......trsiererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqer...................... 142
                                      + +i   r ++kkk  +  ++ l+ ++ +  + +++e +    ++ ++il  +q +                      
  CCD23098.1 723 steigeR------GitlsggqKARINLARCVYKKKDIYLFDDVLSAVDSRVGKHIMDECFLGLLKNETRILATHQLSllerasrvivlgtdgsfeigpv 815
                 4433330......14444443355666777788888888888999999999999999955555444444444444442333334444444444333333 PP

      AAA_23 143 feefelkdkke.........rleelekeleeledekkllekl..eqekekekeleeleeeleeilk 197
                                      l  ++++  ++ed+++ +e++  e+++    e++ele+++++  k
  CCD23098.1 816 D---------VlkrtnqtliNLLLFSNQESKEEDTENIMEEEefEKAERTFTEINELEKQMTQKSK 872
                 1.........03333335558888899999999999988888445555566699999999998766 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 9.3e-05
      AAA_23   21 ltlItGpNGaGKTTildAi 39  
                     I+G +GaGK+Ti+ A+
  CCD23098.1 1259 KIGICGRTGAGKSTIMSAL 1277
                  568*************997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0     0.001      0.55      19      49 ..     638     668 ..     632     672 .. 0.84
   2 !    6.8   0.0    0.0094       5.1      23      47 ..    1262    1286 ..    1254    1292 .. 0.80
   3 ?   -1.0   0.0       2.3   1.3e+03      81      98 ..    1381    1411 ..    1340    1428 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
      AAA_30  19 rvavltGpAGtGKttalkalreaweaaggrv 49 
                  + +++Gp GtGKt  l+al+  +++ +gr+
  CCD23098.1 638 EFIIMVGPIGTGKTSFLNALAGFMNKTEGRI 668
                 47899****************9999986665 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0094
      AAA_30   23 ltGpAGtGKttalkalreaweaagg 47  
                  + G+ G+GK+t+++al ++ e ++g
  CCD23098.1 1262 ICGRTGAGKSTIMSALYRLNEISQG 1286
                  679************9988776654 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2.3
      AAA_30   81 k.............grarlepgtllivDEag 98  
                  +              ra ++++++li DEa 
  CCD23098.1 1381 GanfslgerqllalTRALVRQAKVLILDEAT 1411
                  155555555556665566778899****995 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00023      0.12      17      59 ..     638     680 ..     627     692 .. 0.87
   2 ?    3.5   0.0     0.069        38      21      38 ..    1262    1279 ..    1256    1295 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00023
  Zeta_toxin  17 klillgGqpGAGKselaellkdelerqgnvvrldpDdlRelhP 59 
                   i+++G  G GK++ +++l+  ++++++ +++++D l + +P
  CCD23098.1 638 EFIIMVGPIGTGKTSFLNALAGFMNKTEGRIQVNGDLLLCGYP 680
                 679*********************************9977777 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.069
  Zeta_toxin   21 lgGqpGAGKselaellkd 38  
                  + G +GAGKs+++++l +
  CCD23098.1 1262 ICGRTGAGKSTIMSALYR 1279
                  6799********999865 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0033       1.8      30      59 ..     634     663 ..     628     671 .. 0.81
   2 !    7.0   0.0    0.0071       3.9      29      64 ..    1253    1290 ..    1249    1298 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0033
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkldk 59 
                 +k++  +++vGp GtGKt+ ++ l   ++k
  CCD23098.1 634 IKKGEFIIMVGPIGTGKTSFLNALAGFMNK 663
                 6788889*************9987766664 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0071
       AAA_7   29 llknkkpvllvGptGtGKtviikd..llkkldkekyls 64  
                   +k++ ++ ++G tG GK++i++    l+++++ ++l+
  CCD23098.1 1253 DIKSGEKIGICGRTGAGKSTIMSAlyRLNEISQGEILI 1290
                  578889999*************9953355666555555 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.011       6.2       2      26 ..     643     667 ..     642     691 .. 0.86
   2 ?    6.5   0.0     0.012       6.5       1      32 [.    1262    1293 ..    1262    1297 .. 0.81
   3 ?   -2.8   0.0       8.2   4.4e+03      21      48 ..    1396    1423 ..    1390    1428 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.011
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrs 26 
                 vGp G GKt+f +al+ ++++++ +
  CCD23098.1 643 VGPIGTGKTSFLNALAGFMNKTEGR 667
                 8*****************9988544 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.012
  ATP_bind_1    1 vvGpaGsGKttfvgalseilelrgrsvavvNL 32  
                  ++G  G+GK+t+++al+ + e ++ ++ + N 
  CCD23098.1 1262 ICGRTGAGKSTIMSALYRLNEISQGEILIDNV 1293
                  68***************998877666666555 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 8.2
  ATP_bind_1   21 elrgrsvavvNLDPAaeelpYeaavdir 48  
                  ++  r+ +v+ LD A +++ Ye +  i+
  CCD23098.1 1396 RALVRQAKVLILDEATSSVDYETDGKIQ 1423
                  5556899999***********9987776 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0059       3.2       2      20 ..     640     658 ..     639     673 .. 0.90
   2 ?    4.2   0.0     0.081        44       4      23 ..    1262    1281 ..    1260    1338 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0059
      AAA_33   2 vllvGlpGsGKstlaerll 20 
                 +++vG+ G+GK+ ++  l+
  CCD23098.1 640 IIMVGPIGTGKTSFLNALA 658
                 79************98875 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.081
      AAA_33    4 lvGlpGsGKstlaerllkkl 23  
                  ++G  G+GKst    l++ +
  CCD23098.1 1262 ICGRTGAGKSTIMSALYRLN 1281
                  69**********99998655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0063       3.4      44      68 ..     634     658 ..     624     669 .. 0.89
   2 ?    4.3   0.0     0.053        29      44      67 ..    1254    1277 ..    1241    1289 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0063
   IstB_IS21  44 iekkenivllGpsGvGKshlaialg 68 
                 i+k e i+++Gp G+GK+ +  al+
  CCD23098.1 634 IKKGEFIIMVGPIGTGKTSFLNALA 658
                 788999************9999987 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.053
   IstB_IS21   44 iekkenivllGpsGvGKshlaial 67  
                  i++ e i ++G +G+GKs +  al
  CCD23098.1 1254 IKSGEKIGICGRTGAGKSTIMSAL 1277
                  67789999**********999987 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0      0.02        11      30      59 ..     629     657 ..     614     659 .. 0.90
   2 ?    6.4   0.0    0.0093       5.1      34      59 ..    1253    1277 ..    1245    1278 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.02
                   EEEEEGGGS-.SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  30 plvldlkkmashllvaGatgsGKStalntL 59 
                    ++ld+kk +  ++ +G  g+GK+ +ln+L
    CCD23098.1 629 DITLDIKKGE-FIIMVGPIGTGKTSFLNAL 657
                   5789999999.9****************98 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0093
                    EGGGS-.SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE   34 dlkkmashllvaGatgsGKStalntL 59  
                    d+k+ +  + ++G+tg GKSt + +L
    CCD23098.1 1253 DIKSGE-KIGICGRTGAGKSTIMSAL 1277
                    666667.788***********99887 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0063       3.4       2      26 ..     640     664 ..     639     674 .. 0.85
   2 ?   -2.1   0.0       6.3   3.4e+03       5      21 ..    1263    1279 ..    1262    1285 .. 0.83
   3 ?    3.1   0.0      0.17        90      81     113 ..    1438    1471 ..    1426    1483 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0063
                 EEEE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnre 26 
                 +++vGp GtgK+++   la ++n++
  CCD23098.1 640 IIMVGPIGTGKTSFLNALAGFMNKT 664
                 69*****************999765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 6.3
                  E--SSSSHHHHHHHGGG CS
       AAA_5    5 vGppGtgKselaerlaa 21  
                   G +G gKs+++  l +
  CCD23098.1 1263 CGRTGAGKSTIMSALYR 1279
                  699*******9987755 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.17
                  HHHHHHHHHHSSEEE..-SSSEEE---....... CS
       AAA_5   81 vlnsLlslleerrllleeggelvkakndd.ller 113 
                  ++ +L+++l+ +r+l+ e ge+  +++++ l+ +
  CCD23098.1 1438 IAHRLNTILNYDRILVLEKGEVAEFEKPKvLFDQ 1471
                  6789********************9998876655 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.2e-05     0.018      14     174 ..     634     864 ..     625     893 .. 0.64
   2 ?   -0.0   0.0       1.1   6.2e+02     214     234 ..    1398    1418 ..    1385    1423 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.2e-05
      AAA_11  14 lseseitliqGPPGtgKTktivellsqll........sr................rk....seeeksakpriLvCapSNaAvDellerllr.....gll 79 
                 +++ e+ ++ GP GtgKT+++ +l   ++        +                  +    s  +k++ +++L C + +a  D l +  ++     g+ 
  CCD23098.1 634 IKKGEFIIMVGPIGTGKTSFLNALAGFMNktegriqvNGdlllcgypwiqnatvrDNilfgSPYDKKKYEEVLRCCSLEADLDILPAGDSTeigerGIT 732
                 56778999***************99999965565555005555555556556665114455777899999*************9998877777778899 PP

      AAA_11  80 dsegekykpkivRvgnee..........eriseavksvsleekvekrlekee............................................... 121
                  s g+k +++++R + ++          ++++++v ++ ++e +   l++e+                                               
  CCD23098.1 733 LSGGQKARINLARCVYKKkdiylfddvlSAVDSRVGKHIMDECFLGLLKNETrilathqlsllerasrvivlgtdgsfeigpvdvlkrtnqtlinlllf 831
                 999**********88888899999888877788888888888888888777777877777777777777777777777666555554444443333322 PP

      AAA_11 122 kaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkker 174
                 ++q +ke + e+  +++e                     +k+e++ +++++  
  CCD23098.1 832 SNQESKEEDTENIMEEEEF--------------------EKAERTFTEINELE 864
                 1111111111111111111....................11111111111111 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.1
      AAA_11  214 lakkfdvviIDEAaqavEpst 234 
                  l ++ +v+i DEA+ +v  +t
  CCD23098.1 1398 LVRQAKVLILDEATSSVDYET 1418
                  334889**********98876 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       5.2   2.8e+03      60      87 ..     242     269 ..     231     276 .. 0.83
   2 ?    4.8   0.0     0.069        37       1      24 [.     640     663 ..     640     687 .. 0.85
   3 ?    5.8   0.0     0.032        17       3      20 ..    1262    1279 ..    1260    1307 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 5.2
  RNA_helicase  60 qvkdeenpsdlaelirlvsstpyplnma 87 
                   +++++ np++ + li+ v+ + + ++m 
    CCD23098.1 242 NCTSGLNPMITKRLIQFVEEKAFFPHMH 269
                   455555999*****************96 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.069
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallk 24 
                   i+++Gp g+GK+++ + La  + k
    CCD23098.1 640 IIMVGPIGTGKTSFLNALAGFMNK 663
                   6899*************8866554 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.032
  RNA_helicase    3 lyGpsgeGKStlakeLak 20  
                    ++G++g GKSt++  L +
    CCD23098.1 1262 ICGRTGAGKSTIMSALYR 1279
                    89***********99654 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1    0.0013      0.72      16      43 ..     636     661 ..     614     670 .. 0.80
   2 ?    1.9   0.0      0.39   2.1e+02      19      43 ..    1257    1281 ..    1246    1288 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0013
                 HCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  16 kalgdvilLeGdLGaGKTtlvrglakal 43 
                 k  g++i++ G++G+GKT +  +la  +
  CCD23098.1 636 K--GEFIIMVGPIGTGKTSFLNALAGFM 661
                 3..778***************9998766 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.39
                  TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   19 gdvilLeGdLGaGKTtlvrglakal 43  
                  g+ i + G  GaGK+t++ +l +  
  CCD23098.1 1257 GEKIGICGRTGAGKSTIMSALYRLN 1281
                  45677899**********9998765 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.15        82      86     138 ..     391     442 ..     376     445 .. 0.88
   2 ?    5.9   0.0     0.018        10       4      23 ..     640     659 ..     637     718 .. 0.80
   3 ?    0.6   0.1      0.81   4.4e+02       3      22 ..    1259    1278 ..    1257    1285 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.15
   PduV-EutP  86 svfnkeviGiitkidlaedeenieaveelLksaGaekifevsavekegieell 138
                  ++ k ++G+  k+++  ++++++  +e L+++ + k +  +   +++i++l+
  CCD23098.1 391 LFIFKSILGLRVKANKY-TDARVTLMREILNNMKMVKYYAWEDAYEKNIQDLR 442
                 35679***********9.899****************************9997 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.018
   PduV-EutP   4 illiGkvgsGKttLtqalkg 23 
                 i+++G++g+GKt+  +al g
  CCD23098.1 640 IIMVGPIGTGKTSFLNALAG 659
                 89************999987 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.81
   PduV-EutP    3 killiGkvgsGKttLtqalk 22  
                  ki + G++g+GK t++ al 
  CCD23098.1 1259 KIGICGRTGAGKSTIMSALY 1278
                  77789**********99985 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00084      0.45       1      23 [.     640     662 ..     640     690 .. 0.83
   2 ?   -0.2   0.0       2.4   1.3e+03       3      20 ..    1262    1279 ..    1260    1307 .. 0.83
   3 ?   -0.8   0.0       3.6     2e+03      40      74 ..    1385    1417 ..    1349    1434 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00084
                 EEEESSTTSSHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelg 23 
                 ++++Gp GtGKT++ +a+a  ++
  CCD23098.1 640 IIMVGPIGTGKTSFLNALAGFMN 662
                 5799***************9876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2.4
                  EESSTTSSHHHHHHHHHH CS
         AAA    3 lyGppGtGKTllakavak 20  
                  ++G  G GK+++++a+ +
  CCD23098.1 1262 ICGRTGAGKSTIMSALYR 1279
                  67999*******999865 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 3.6
                  THHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA   40 gesekkirelfkeakekakpsilfiDEidalaksr 74  
                  + +e+++ +l +++ ++a  ++l++DE+ + +  +
  CCD23098.1 1385 SLGERQLLALTRALVRQA--KVLILDEATSSVDYE 1417
                  455666666666655555..9******98877665 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0043       2.4       3      27 ..     640     666 ..     638     671 .. 0.78
   2 ?    3.6   0.0     0.082        44       3      28 ..    1260    1285 ..    1258    1297 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0043
                 EEEEESTTCCHHHHHHHHH..CT--SS CS
        cobW   3 tvltGflGsGKTtLlnhll..enragl 27 
                 ++++G++G+GKT++ln+l    n+ + 
  CCD23098.1 640 IIMVGPIGTGKTSFLNALAgfMNKTEG 666
                 789**************9877444444 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.082
                  EEEEESTTCCHHHHHHHHHCT--SS- CS
        cobW    3 tvltGflGsGKTtLlnhllenraglk 28  
                  ++++G  G+GK+t++++l + ++  +
  CCD23098.1 1260 IGICGRTGAGKSTIMSALYRLNEISQ 1285
                  6799************9997666555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0042       2.3      24      54 ..     637     667 ..     628     718 .. 0.82
   2 ?    2.3   0.2      0.36   1.9e+02      29      46 ..    1262    1279 ..    1250    1412 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0042
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggi 54 
                 +e ++ +G+ G+GK+s +++l+  ++k++g 
  CCD23098.1 637 GEFIIMVGPIGTGKTSFLNALAGFMNKTEGR 667
                 378999**************99877777544 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.36
      AAA_16   29 lsGesGvGKsslvrellr 46  
                  + G  G GKs+++ +l+r
  CCD23098.1 1262 ICGRTGAGKSTIMSALYR 1279
                  67999********99996 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0038       2.1      30      57 ..     634     661 ..     630     668 .. 0.88
   2 ?    1.7   0.0       0.3   1.6e+02      32      53 ..    1256    1277 ..    1246    1280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0038
      AAA_25  30 lpagelallaGapgtGKttlaldlalav 57 
                 + +ge+++ +G+ gtGKt ++  la  +
  CCD23098.1 634 IKKGEFIIMVGPIGTGKTSFLNALAGFM 661
                 579*****************99998665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.3
      AAA_25   32 agelallaGapgtGKttlaldl 53  
                   ge + ++G++g+GK+t+ + l
  CCD23098.1 1256 SGEKIGICGRTGAGKSTIMSAL 1277
                  57778899*********98876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.035        19       2      20 ..     640     658 ..     640     674 .. 0.81
   2 ?    4.2   0.0     0.086        46       1      21 [.    1259    1279 ..    1259    1301 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.035
                 EEEESSTTSSHHHHHHCHC CS
         Roc   2 vvlvGdsgvGKtsllkrfv 20 
                 +++vG  g+GKts+l+ + 
  CCD23098.1 640 IIMVGPIGTGKTSFLNALA 658
                 79*************9886 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.086
                  EEEEESSTTSSHHHHHHCHCT CS
         Roc    1 KvvlvGdsgvGKtsllkrfve 21  
                  K+ ++G +g+GK+++++ + +
  CCD23098.1 1259 KIGICGRTGAGKSTIMSALYR 1279
                  8999************99875 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0     0.007       3.8       2      21 ..     640     663 ..     639     689 .. 0.76
   2 ?    2.1   0.1      0.38     2e+02       2      21 ..    1260    1279 ..    1259    1288 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.007
      AAA_28   2 ivitGgestGKTtlleaLa....a 21 
                 i+++G+ +tGKT+ l+aLa    +
  CCD23098.1 640 IIMVGPIGTGKTSFLNALAgfmnK 663
                 899***************965541 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.38
      AAA_28    2 ivitGgestGKTtlleaLaa 21  
                  i i G  ++GK+t+++aL +
  CCD23098.1 1260 IGICGRTGAGKSTIMSALYR 1279
                  6789999**********965 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0045       2.4       3      29 ..     639     665 ..     637     672 .. 0.86
   2 ?    1.0   0.0       0.5   2.7e+02       6      39 ..    1262    1295 ..    1258    1302 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0045
                 EEEEEESTTSSHHHHHHHHHHHHHHTT CS
       SRP54   3 villvGlqGaGKTttlaKLaallkkeg 29 
                  i++vG+ G+GKT+ l  La  ++k +
  CCD23098.1 639 FIIMVGPIGTGKTSFLNALAGFMNKTE 665
                 699*****************9998875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.5
                  EEESTTSSHHHHHHHHHHHHHHTTS-EEEEEEST CS
       SRP54    6 lvGlqGaGKTttlaKLaallkkegkkvllvaaDt 39  
                  ++G +GaGK t ++ L +l + ++ ++l+  +D+
  CCD23098.1 1262 ICGRTGAGKSTIMSALYRLNEISQGEILIDNVDI 1295
                  89***********999888877777777776665 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.7       5.3   2.9e+03     116     141 ..     575     608 ..     536     635 .. 0.47
   2 ?   12.0   0.0   0.00031      0.17      24      45 ..    1258    1279 ..    1248    1291 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.3
       DUF87 116 vqrsvleealdqaka........keekeklssde 141
                 +++++ +++l++ k+        kee++ ++++e
  CCD23098.1 575 KLEEASNDKLKKKKKkgnnnkskKEEEQVVKTNE 608
                 1222222222211111111111222222222222 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00031
       DUF87   24 rHlAilgsTGsGKSntvavLle 45  
                  + ++i g+TG+GKS+ ++ L +
  CCD23098.1 1258 EKIGICGRTGAGKSTIMSALYR 1279
                  789***************9965 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00099      0.54       1      21 [.     640     660 ..     640     671 .. 0.91
   2 ?    2.3   0.1      0.29   1.6e+02      43      77 ..     835     872 ..     800     907 .. 0.67
   3 ?    4.3   0.0     0.067        37       1      20 [.    1260    1279 ..    1260    1290 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00099
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 i+ vG    GK+S+lnaL g 
  CCD23098.1 640 IIMVGPIGTGKTSFLNALAGF 660
                 789***************996 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.29
                 T---CCS...SSEEEE...T-EB--CHHHHHHHHHHHH CS
   Dynamin_N  43 eeeaseravkeelkek...ekkledfsevreeiekete 77 
                 e+++++++++ e +e+   e+ +++++e++++++++++
  CCD23098.1 835 ESKEEDTENIMEEEEFekaERTFTEINELEKQMTQKSK 872
                 23323344444444443346666666666666655544 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.067
                  EEEEEBTTTTHHHHHHHHHT CS
   Dynamin_N    1 iavvGsqSsGKSSvlnaLlg 20  
                  i ++G + +GKS+++ aL +
  CCD23098.1 1260 IGICGRTGAGKSTIMSALYR 1279
                  789************99975 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0057       3.1      11      50 ..     624     661 ..     621     671 .. 0.86
   2 ?    3.5   0.0     0.083        45      31      49 ..    1262    1280 ..    1247    1281 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0057
      AAA_27  11 yGkftdrsldfsaeeadlhliyGpNEAGKstalrAisdll 50 
                 +  f d +ld++  + ++ +++Gp  +GK++ l+A+  ++
  CCD23098.1 624 FSGFHDITLDIK--KGEFIIMVGPIGTGKTSFLNALAGFM 661
                 777999999998..899******************98765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.083
      AAA_27   31 iyGpNEAGKstalrAisdl 49  
                  i G   AGKst+++A+ +l
  CCD23098.1 1262 ICGRTGAGKSTIMSALYRL 1280
                  789999*********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2230  (0.124379); expected 358.6 (0.02)
Passed bias filter:                      826  (0.0460706); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 1.35u 0.34s 00:00:01.69 Elapsed: 00:00:00.50
# Mc/sec: 8925.90
//
Query:       CCD23099.1  [L=313]
Description: hypothetical protein NDAI_0B00650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-87  293.4   4.5    2.9e-87  293.2   4.5    1.0  1  Glyco_hydro_17  Glycosyl hydrolases family 17


Domain annotation for each model (and alignments):
>> Glyco_hydro_17  Glycosyl hydrolases family 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.2   4.5   1.6e-91   2.9e-87       1     313 []      26     309 ..      26     309 .. 0.99

  Alignments for each domain:
  == domain 1  score: 293.2 bits;  conditional E-value: 1.6e-91
  Glyco_hydro_17   1 igvnyGvkgnnlPstskvislyksnnikelrlyksdtevlkalaasnlevilnlpnsdlaelesnqskaavWvqdnvrpaaekvkikyiavgnei 95 
                     +++n+Gvk nn+ + +k+++ y+s    +l+ +k +t+++k++aas++++++nl   ++ae +++ ++++vW++d+++++ae    +++++++ i
      CCD23099.1  26 LAFNMGVK-NND-GSCKSTEQYES----DLETLKGYTSTVKVYAASDCNTLQNLA--PAAENKGFSIFVGVWPNDDAHFEAEV--QALQTYLPTI 110
                     79******.999.9**********....***************************..*************************9..9********* PP

  Glyco_hydro_17  96 spstsaakavflvpamanirnaltaaglsnkikvstalaldildssyppsqstfreevkpvvdpivvflagtnspllvnvyPYfvysndpsnvsL 190
                     +  t+a+   flv+++a++rn+++  +l++ki+ ++++  +i+ds+ + s+s++++++   vd+++v++ag+ns+++++++  fv++n+      
      CCD23099.1 111 KTDTVAG---FLVGSEALYRNDMSPDQLAEKINSVRDTISKISDSQ-GNSYSGKQVGT---VDSWNVLVAGYNSAVITASD--FVMANA------ 190
                     *******...************************************.***********...********************..******...... PP

  Glyco_hydro_17 191 dyalfqkqslvndnglayrnlfDaildavyaaqekkGgtdielvvsEtGWPsdGstgaslenaatyveNlikkvkeGtpskpgkgietyvfalFd 285
                      ++++q+q + n    a++++fD+i++a+ ++q++kG+tdi ++v+EtGWP+dGs   ++e+++++++N++++++eG+++++++g++++ f++Fd
      CCD23099.1 191 -FSYWQGQVMSN----ASYSFFDDIMQALGTIQTAKGSTDISFWVGETGWPTDGS---NFESSYPSIDNAKQFWQEGICAMRAWGVNVIAFEAFD 277
                     .**********9....***************************************...8************************************ PP

  Glyco_hydro_17 286 EnqKpees....vekhfGvfkpdkslkYsldf 313
                     E++Kp++s    ve h+Gvf++d++lkYsl +
      CCD23099.1 278 EDWKPPTSgisdVENHWGVFTSDNKLKYSLSC 309
                     *****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2304.11
//
Query:       CCD23100.1  [L=322]
Description: hypothetical protein NDAI_0B00660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-96  321.3  14.2    6.4e-96  321.0  14.2    1.0  1  SURF4     SURF4 family
  ------ inclusion threshold ------
       0.14   12.7  15.3        1.5    9.5   6.0    3.4  3  DoxX      DoxX
       0.27   10.5   3.7        2.2    7.5   0.0    2.3  2  S_4TM     SMODS-associating 4TM effector domain
        1.2    9.6  13.1       0.26   11.7   3.6    2.4  2  MerC      MerC mercury resistance protein


Domain annotation for each model (and alignments):
>> SURF4  SURF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.0  14.2   1.4e-99   6.4e-96      13     267 .]      73     322 .]      63     322 .] 0.97

  Alignments for each domain:
  == domain 1  score: 321.0 bits;  conditional E-value: 1.4e-99
       SURF4  13 tllrktkkylPtlarlllvatfleDglrllfqwsdqveyldkskklgyflatllvlvvllglligsllvvlrkkvayavgvLlfivilqaiaYslltdl 111
                  +++++k+y+P +ar+++v tf+eD++r+l+qw+dqv+yl+++k+++yf+++l+++ v +++ +gs++++lrk+++ya++ L+f+vilq ++Y+l+ ++
  CCD23100.1  73 PFINRIKPYIPAIARFCIVVTFYEDSMRILTQWTDQVSYLNQWKHYPYFFVVLFLFSVSVTMSVGSTFLILRKHTKYATSALCFVVILQGLVYGLFNSS 171
                 6999*********************************************************************************************** PP

       SURF4 112 klllrnlsvigglllllaesliekkslfaglPeleee.ekaksylllagrvllvlmfisllafelsftrvlltiigvaliilvviGfktklaalvLvll 209
                 +++lrn+sviggll+++++s++++k++f++lPel+++ ++ + yll+agr+++vlmf+++++ + s++ ++ tii +   i++++Gfktkla++vLvl+
  CCD23100.1 172 SFILRNFSVIGGLLIAFSDSIVQNKITFGMLPELSDKkDQIRGYLLFAGRIMMVLMFLGFTFGK-SWIVIVFTIICT---ICLAVGFKTKLASVVLVLI 266
                 **********************************9986889********************999.***********9...9****************** PP

       SURF4 210 LfvlnlvlnafWtipkekelrdflkYdffqtlsviGGLLlvvatGpGelsvDekkkky 267
                 L+++n++ln++W+  ++++ rd+ kY+ffq+ls+iGGLLlv++tG+GelsvD kkk+y
  CCD23100.1 267 LTFYNVLLNNYWF--QDAFQRDLSKYEFFQNLSIIGGLLLVTNTGAGELSVDSKKKIY 322
                 *************..7****************************************98 PP

>> DoxX  DoxX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1    0.0017       7.7       3      77 ..      84     159 ..      82     166 .. 0.85
   2 ?    0.3   0.7      0.24   1.1e+03       1      15 [.     216     230 ..     216     236 .. 0.83
   3 ?    9.5   6.0   0.00033       1.5      46      80 ..     237     271 ..     227     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0017
        DoxX   3 lllRlllgvlfiahGlqkltgfglegtaaslaalglpp...pellaylaalvElvgglllllGlltRlaAlalavtll 77 
                  ++R ++ v+f       lt  + ++ + +l+++   p    +l+++ + ++  vg+ +l+l   t++a  al ++++
  CCD23100.1  84 AIARFCIVVTFYEDSMRILT--QWTDQVSYLNQWKHYPyffVVLFLFSVSVTMSVGSTFLILRKHTKYATSALCFVVI 159
                 689*****************..8999999999666665566999999999*****************98888777665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.24
        DoxX   1 lllllRlllgvlfia 15 
                 ll+++R+++ ++f+ 
  CCD23100.1 216 LLFAGRIMMVLMFLG 230
                 5899********985 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00033
        DoxX  46 ylaalvElvgglllllGlltRlaAlalavtllvat 80 
                 + ++++ +++ ++l++G+ t+la+++l+++l +  
  CCD23100.1 237 WIVIVFTIICTICLAVGFKTKLASVVLVLILTFYN 271
                 78999************************998765 PP

>> S_4TM  SMODS-associating 4TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0005       2.2     162     232 ..     143     210 ..     142     215 .. 0.85
   2 ?    2.7   1.5     0.014        63     168     207 ..     236     273 ..     232     289 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0005
       S_4TM 162 lrrryaklllfalvlwillvlvvgliknlslsdlllsvivpllpllllalkeyreqresakelerlkeeie 232
                 lr++ + ++ ++++++il +lv+gl+++   s+++l  ++ + +ll+ + + + +++ +   l +l ++ +
  CCD23100.1 143 LRKHTKYATSALCFVVILQGLVYGLFNS---SSFILRNFSVIGGLLIAFSDSIVQNKITFGMLPELSDKKD 210
                 79999999*****************766...5689999999999999999999999998887777776655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.014
       S_4TM 168 klllfalvlwillvlvvgliknlslsdlllsvivpllpll 207
                 ++++++++++++++l+vg+  +++l++++l +i+ +  +l
  CCD23100.1 236 SWIVIVFTIICTICLAVGF--KTKLASVVLVLILTFYNVL 273
                 5777888888888888887..6667777766655554444 PP

>> MerC  MerC mercury resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   4.9      0.16   7.3e+02      37     110 ..     120     188 ..     101     229 .. 0.58
   2 ?   11.7   3.6   5.9e-05      0.26      31     110 ..     227     306 ..     215     309 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.16
        MerC  37 llhqvllil..vvaigllalvvgyrrhrktsvlvlgalG.llillvalflgteaeetllfgslwqvltvlGaalLai 110
                 ++ +vl+++  +v +++ ++++  r+h+k+   +l  +  l  l+++lf      +++    + + ++v+G +l+a 
  CCD23100.1 120 YFFVVLFLFsvSVTMSVGSTFLILRKHTKYATSALCFVViLQGLVYGLFNS----SSF----ILRNFSVIGGLLIAF 188
                 444444444114444445555555666665555444332023333333333....223....556666666666554 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5.9e-05
        MerC  31 sflasellhqvllilvvaigllalvvgyrrhrktsvlvlgalGllillvalflgteaeetllfgslwqvltvlGaalLai 110
                 +fl     + +++i++++i+ ++l+vg+++     vlvl ++   +ll   +++   +  l   + +q l+++G +lL++
  CCD23100.1 227 MFLGFTFGKSWIVIVFTIICTICLAVGFKTKLASVVLVLILTFYNVLLNNYWFQDAFQRDLSKYEFFQNLSIIGGLLLVT 306
                 33445677899*******************9999999999999999999999996666666788999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1376  (0.0767472); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2239.29
//
Query:       CCD23101.1  [L=431]
Description: hypothetical protein NDAI_0B00670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-21   75.2   1.8    6.3e-21   75.2   1.8    3.5  3  RAC_head    Ribosome-associated complex head domain
    2.6e-16   59.5   0.3    9.3e-16   57.7   0.3    2.1  1  DnaJ        DnaJ domain
  ------ inclusion threshold ------
        4.3    5.1   7.4        6.1    4.6   7.4    1.1  1  V_ATPase_I  V-type ATPase 116kDa subunit family
        5.3    6.0  11.4         11    4.9  11.4    1.6  1  SLC12       Solute carrier family 12


Domain annotation for each model (and alignments):
>> RAC_head  Ribosome-associated complex head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.3   5.7e+03      40      84 ..      77     123 ..      65     135 .. 0.61
   2 ?   -3.4   2.6         4   1.8e+04       1       8 [.     294     301 ..     287     309 .. 0.59
   3 !   75.2   1.8   1.4e-24   6.3e-21       1      96 [.     341     427 ..     341     429 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHH--HHHHHHHHHHHTT--..-HHHHHHHHHHHHHH CS
    RAC_head  40 dkvLedvdllieklddeeLaelaekleaak..daeevkavfkeevke 84 
                 d+ L+d  ll +   d + a+l +++  +k   +++ ++++k+  k+
  CCD23101.1  77 DQELADESLLSHDARDWKTADLYAAMGLSKlrFKATENQIIKAHRKQ 123
                 66677777887777777777777766444322344444444444443 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4
                 XXXXXXXX CS
    RAC_head   1 KKaKeaaK 8  
                 KK+Ke++K
  CCD23101.1 294 KKEKERKK 301
                 34444333 PP

  == domain 3  score: 75.2 bits;  conditional E-value: 1.4e-24
                 XXXXXXXX-HHHHHHHHHHHHHHHTGGGSSSS--.HHHHHHHHHHHHHHHHH--HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTSS-GGG- CS
    RAC_head   1 KKaKeaaKkalKKekralrgavkdanYFadgeaekakvidkvLedvdllieklddeeLaelaekleaakdaeevkavfkeevkelveagklkeekl 96 
                 KK+KeaaK+a+KK+kra+r++ k+a YF  g+a+ka++id   e+v l++++ldd++L ++a k++a     +vk++f+e + +l ++gkl ++ l
  CCD23101.1 341 KKQKEAAKAAKKKNKRAIRNSPKEAGYF--GDADKAATID---EQVGLIVDSLDDDQLVDVAGKIKAG----SVKETFQEIAGTLKDSGKLPASLL 427
                 9***************************..**********...**********************886....8*****************998765 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.3   2.1e-19   9.3e-16       1      63 []      97     165 ..      97     165 .. 0.93

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 2.1e-19
                 HHHHHHTSSTT...G-HHHHHHHHHHHHHHHSTTTSCCHH...HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskd...asedeIkkaYrklalkyHPDknpkdp...eaeekFkeineAyevLsdpekRkqYD 63 
                 d+Y+ +g+sk    a+e++I ka+rk+++kyHPDk++      e++  Fk i++A+e+L+d++kR+qYD
  CCD23101.1  97 DLYAAMGLSKLrfkATENQIIKAHRKQVVKYHPDKQSAAGvglEQDAFFKIIQKAFETLTDSTKRQQYD 165
                 79********98889********************966657889999*********************9 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   7.4    0.0014       6.1      11     167 ..     207     402 ..     202     419 .. 0.54

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0014
  V_ATPase_I  11 frDlnedvnafqrkfvkevrrcdemerklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavl 109
                 + D n++++ ++ +f++  +r+d   r+++fl+e + + +++  +++ +e++++a+++k+    +++l kl e+ ++ +   ++ k+e ++ +e k+  
  CCD23101.1 207 LGDANSSKKDVE-QFYSFWHRFDSW-RTFEFLDEDVPDDSSNRDHKRYIERKNKAARDKKKTADNARLVKLVERAMSEDPRIKAFKEEEKKEKERKKWE 303
                 567777666655.566777888764.7899999999885555555544445555555555555556666777777777777777777777777777777 PP

  V_ATPase_I 110 ekakefleeeeeeeeeeeseeeeee.keeeeeeeseeeeeeelleeeee........................................lsfvaGvikr 167
                 ++a +  e+e++ ++e+e+++++e  ++++ ++++++++++e+++ +++                                        l  vaG ik+
  CCD23101.1 304 REAGSRAEAEAKAKAEAEAKAKAELeAASQASAKADKKKQKEAAKAAKKknkrairnspkeagyfgdadkaatideqvglivdsldddqLVDVAGKIKA 402
                 777777766633333333322222222222222222222222221111133456666666666666666666655555555555555553335555554 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  11.4    0.0025        11     165     247 ..     269     378 ..     212     393 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0025
       SLC12 165 e......................ekskekeekekleekdsnlslseekk.....eeekekkkekkkkkekkeklkkkekslllkeaskeekevleeitq 236
                 +                      e++keke+k+   e+ s+++ + ++k     + ++e + ++++++++++k++k+  +  +k+++++ ++  +e+  
  CCD23101.1 269 NarlvklveramsedprikafkeEEKKEKERKKWEREAGSRAEAEAKAKaeaeaKAKAELEAASQASAKADKKKQKEAAKAAKKKNKRAIRNSPKEAGY 367
                 012222333444444444343322222222222222222222222222232222222222223333333333333333333333333344777888888 PP

       SLC12 237 fqkkqkkgtiD 247
                 f +  k +tiD
  CCD23101.1 368 FGDADKAATID 378
                 88888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2409  (0.134363); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 2965.16
//
Query:       CCD23102.1  [L=786]
Description: hypothetical protein NDAI_0B00680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-36  124.3  27.5      1e-35  123.2  27.5    1.5  1  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin
    0.00026   20.9   0.0          9    6.1   0.0    4.6  5  DUF5559         Family of unknown function (DUF5559)


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2  27.5   1.2e-39     1e-35       5     320 ..      13     311 ..       9     316 .. 0.86

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 1.2e-39
  Hyphal_reg_CWP   5 ialalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitstssllalsvtlasatgsieNnGiivfnseesltas 99 
                      + +la+ei++n + +   +++ g +tI+ g+ l i++ ++++f gdl+v  +g+l++ +t++ +++ +   +  ++i+NnG iv+++ ++  + 
      CCD23102.1  13 SSPILAIEIKSNLTLNRDSSFS-GGVTIDYGSQL-IMDGYTHEFYGDLEV--DGNLCVANTKAMTNFGFI--TKGNTITNNGNIVLQNYATFYSG 101
                     56689********999999999.********997.99************9..9********977777666..899******************** PP

  Hyphal_reg_CWP 100 syklvgasFeNnGelylagsgsvvastmeitsnsweNnGlivfyqsqrssgtvklgaalgsitNdGqIclknq.ayqqttsiqGsGCitvgedss 193
                     ++++  ++F N+G + l++  s  + ++++t n++ N+G   +  +q    +++lg++ ++++N+G+I l+ +  +++++ ++G GCi ++    
      CCD23102.1 102 VLDWEMNNFYNYGYMQLGQFFS-KSLKWTVT-NDFVNTGKFLLVVTQ----ELQLGNNVTTLQNSGTINLYTNfLTSINSPVKGGGCIILTSTVL 190
                     *************999988885.66667766.*******98887665....57899999***********866156799*********8865433 PP

  Hyphal_reg_CWP 194 iyisnsllsissdqtiYLadsssslvvesvskpqtfkvagFGng.nkigltlpllgl.vlssisYdsdtgiLtlralllsqkFnIGtGYdsskFe 286
                       i n+  +i +dqt+Y++  +  l v      +t +++gFGn  +ki+++ +   + +++++sY+++tgiL+ + + ++ +Fn+G+GYd+skF+
      CCD23102.1 191 -SI-NTSKDI-NDQTFYFTGYNVDLNVVGKNPISTPTIYGFGNTeHKISFNGSG--VaTVDKMSYSTTTGILSATVNGVTYTFNMGKGYDASKFS 280
                     .34.555455.89**************988866779******9879****9994..44679**************99999**************9 PP

  Hyphal_reg_CWP 287 ivtdagagllsvqngavtYngpvPsrslPsaCqa 320
                      v+ ++   ++ +  ++tY+g+ Ps+++P+ C++
      CCD23102.1 281 SVSYTS---TTNNYPYITYSGTTPSQTVPKLCDT 311
                     444433...4456789****************84 PP

>> DUF5559  Family of unknown function (DUF5559)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0     0.001         9      83     118 ..     411     446 ..     404     453 .. 0.88
   2 !    5.7   0.0    0.0014        12      81     120 ..     454     493 ..     446     505 .. 0.85
   3 ?    0.8   0.0     0.043   3.9e+02      80     110 ..     541     571 ..     529     586 .. 0.82
   4 ?   -0.4   0.0       0.1   9.2e+02      81     110 ..     587     616 ..     577     630 .. 0.83
   5 ?    0.4   0.0     0.056     5e+02      81     111 ..     632     662 ..     624     674 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.001
     DUF5559  83 qppppqhpgpyqeriwvggegwgevgglrlskvgrr 118
                  ppp   p py  +i  gg    ev  +  ++vg +
  CCD23102.1 411 IPPPFSIPKPYTTKITTGGSTISEVVSFASTQVGGK 446
                 589999********************9999999976 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0014
     DUF5559  81 qrqppppqhpgpyqeriwvggegwgevgglrlskvgrrdr 120
                    ppp   p py   i  gg    ev  +  ++vg +  
  CCD23102.1 454 STIPPPFSIPKPYTTTITTGGSTISEVVSFASTQVGGKPA 493
                 5679999*********************999999997755 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.043
     DUF5559  80 hqrqppppqhpgpyqeriwvggegwgevggl 110
                     ppp   p py   i   g    ev  +
  CCD23102.1 541 VSTIPPPFSLPAPYTTTITTDGTTISEVVSF 571
                 55679999**************999999765 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.1
     DUF5559  81 qrqppppqhpgpyqeriwvggegwgevggl 110
                    ppp   p py   i   g    ev  +
  CCD23102.1 587 STIPPPFSLPVPYTTTITTDGTTISEVVSF 616
                 56799999***********99999998765 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.056
     DUF5559  81 qrqppppqhpgpyqeriwvggegwgevgglr 111
                    ppp   p py   i   g    ev  + 
  CCD23102.1 632 STIPPPFSLPAPYTTTITTDGTTISEVISFA 662
                 5679999*************99999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 6244.73
//
Query:       CCD23103.1  [L=629]
Description: hypothetical protein NDAI_0B00690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-10   39.6   0.0    1.7e-09   38.5   0.0    1.7  1  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   9.3e-14   1.7e-09       3     165 .]     283     433 ..     281     433 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 9.3e-14
                 EEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHH.HHHHHHHHHHHHTCCCETTTCEEEESSH CS
     RNase_T   3 iDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfke.vleefkellrklallvahnaafdvgflr 100
                 +D+E+   ++     ++ i    +d++       +++yvkp+ +  + d++t+f+git+e ld+  ++ + v +++ +++  +         ++vg++ 
  CCD23103.1 283 LDCEMCLSEN-DGLVLTRISVLDFDMKV-----IYDTYVKPDVP--IVDYLTKFSGITKEILDPVTTTLKdVQNDLMKIISSDD--------ILVGHSL 365
                 6777766666.45566666666666665.....479********..****************9987776548888888888665........5556889 PP

                 HHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSS......TSSHHHHHHHHHHHH CS
     RNase_T 101 aadkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgr......aHrAldDaeataklf 165
                 + d +++k+   +++ ++dt+i++  +    ++  l++la +++  ++++       H++++Da+++++l+
  CCD23103.1 366 QSDLKVMKL---RHPRIIDTAIIFNHKAGPPFKPALRYLASTYLNINIQEgnsnvlGHDSIEDARTCMQLL 433
                 999999999...56799******9998777777899999999998888888777888*********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1634  (0.0911373); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.38
# Mc/sec: 5010.00
//
Query:       CCD23104.1  [L=314]
Description: hypothetical protein NDAI_0B00700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-45  153.9   1.7    2.6e-45  153.9   1.7    2.5  2  Rtt102p      Rtt102p-like transcription regulator protein
  ------ inclusion threshold ------
       0.18   11.7   0.9       0.27   11.2   0.1    1.7  2  Lipocalin_2  Lipocalin-like domain


Domain annotation for each model (and alignments):
>> Rtt102p  Rtt102p-like transcription regulator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9   1.7   2.9e-49   2.6e-45       2     132 .]       4     146 ..       3     146 .. 0.94
   2 ?   -2.4   3.2      0.58   5.2e+03     115     120 ..     179     184 ..     148     244 .. 0.53

  Alignments for each domain:
  == domain 1  score: 153.9 bits;  conditional E-value: 2.9e-49
                 HHHHTT---.TTT.S------EEEEEE--B------------..---------B-S--EEEE.EE-S.............TT-...---------.--- CS
     Rtt102p   2 LIekANkgs.ylg.sqdkkehwkydWytpvkveessqneeasaeesneeneeekysfkyktW.lksd.............eaeq..kdieeeneeldll 82 
                 LI+kAN+++ y+g +qd+++hw+y+W+tp+k+e++++n++++    n e ++eky+fk+k+W l+++             +     +di++ + ++ l+
  CCD23104.1   4 LINKANRANnYYGpNQDSNIHWEYNWFTPLKIETYANNTTNR----NPEGNLEKYPFKFKKWqLRIQntndendtimttsQ--DntHDISSVSLSSLLF 96 
                 8*******998888****************************....****************9999999999999885543..155************* PP

                 -TTCCB--XXXXX.XXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXX CS
     Rtt102p  83 dlskydrtkkske.lkvtnaksaneeaegdsLtvddIRgAVGgsesiaglS 132
                 dl+k+drtk++++  kv+na++an++a+g sLtvddIRgAVGgse+i+glS
  CCD23104.1  97 DLNKFDRTKQQSQlPKVANAMNANGTADG-SLTVDDIRGAVGGSEAIPGLS 146
                 *************99************98.********************8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.58
                 XXXXXX CS
     Rtt102p 115 vddIRg 120
                 v++I +
  CCD23104.1 179 VENITD 184
                 333333 PP

>> Lipocalin_2  Lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     3e-05      0.27      23     135 ..       7     121 ..       2     130 .. 0.82
   2 ?   -3.0   0.1       0.7   6.3e+03      30      50 ..     209     229 ..     195     242 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3e-05
  Lipocalin_2  23 gcvdvtaeYtlrddgtiaVenrcrevegklkeiegkAkvedeaseaklkVsFlkeflr.ievvkgdYwvleldddyslalvgspsrkylwils...Rt 116
                  +++ +++ Y  ++d +i+ e++ +++ +  + ++ + + + e++ +k   +F k+ lr  +    +  ++  ++d ++ +++ +  + l+ l    Rt
   CCD23104.1   7 KANRANNYYGPNQDSNIHWEYNWFTPLKIETYANNTTNRNPEGNLEKYPFKFKKWQLRiQNTNDENDTIMTTSQDNTHDISSVSLSSLLFDLNkfdRT 104
                  566788899****************99999999999999999****************667778899**************99999999877522244 PP

  Lipocalin_2 117 pqlseeqlekllekareqG 135
                   q  ++ql k+ + ++++G
   CCD23104.1 105 KQ--QSQLPKVANAMNANG 121
                  44..555666666666655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.7
  Lipocalin_2  30 eYtlrddgtiaVenrcreveg 50 
                  + t+ + ++i V+n ++e e+
   CCD23104.1 209 DKTRTETEEIVVNNGVQEREA 229
                  335555667777777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1154  (0.064365); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2301.94
//
Query:       CCD23105.1  [L=705]
Description: hypothetical protein NDAI_0B00710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-07   29.8   0.3    1.9e-06   27.7   0.3    2.2  1  DDE_1     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.3     1e-10   1.9e-06      60     145 ..     275     365 ..     193     401 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1e-10
       DDE_1  60 eeWL.kvfdkrle.aekrkilLlldssrshetvel.leselqniklvflPassasllqPldqgvvselKarYrrql..lqalleeqnrlsk 145
                  +WL  +f kr   ++k+  lLl+d+   + ++ + l++++ nikl+ +P+ ++s +qPl+ + +  ++ ++  +l  l+++ +++n+ ++
  CCD23105.1 275 LAWLtDIFAKRESfNIKENKLLLIDEESRYLNIPFiLKCKELNIKLFLIPNYATSWFQPLEISTFGLIRGYVDSNLpsLTNIHDNNNNPKD 365
                 58*********9999****************99988*************************999888887777765223444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1377  (0.0768029); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4922.18
//
Query:       CCD23106.1  [L=156]
Description: hypothetical protein NDAI_0B00720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.2   0.1        0.2   11.7   0.1    1.3  1  DUF5345   Family of unknown function (DUF5345)


Domain annotation for each model (and alignments):
>> DUF5345  Family of unknown function (DUF5345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.1e-05       0.2      32      55 ..       3      26 ..       1      41 [. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.1e-05
     DUF5345 32 rkrkrlrrElllFlliAllilsll 55
                 +r++++r l l++liAl +++++
  CCD23106.1  3 SQRSKQIRNLFLYILIALSLIAAV 26
                79******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1253.36
//
Query:       CCD23107.1  [L=172]
Description: hypothetical protein NDAI_0B00730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-24   84.4   0.1    1.2e-23   83.6   0.1    1.4  1  DUF2406   Uncharacterised protein (DUF2406)


Domain annotation for each model (and alignments):
>> DUF2406  Uncharacterised protein (DUF2406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.1   6.5e-28   1.2e-23       1      63 [.      78     147 ..      78     147 .. 0.88

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 6.5e-28
     DUF2406   1 AvseaqPfeq....aad.kl.slaalrsiqr.sykDvfGkeiadpDlSNPtRsRdERPLdTIRsFeaaie 63 
                 A++ea+Pf+q    a++ ++ + ++l++++r +y+DvfG++i+ +D+SNPtR+RdERPLdTI++F+++++
  CCD23107.1  78 AFQEAEPFQQalgnASNgGNnCRSFLNDAKRyKYRDVFGRKIKVRDRSNPTRERDERPLDTIKGFQYSLT 147
                 89********7665444333689999999*999**********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1292.37
//
Query:       CCD23108.1  [L=582]
Description: hypothetical protein NDAI_0B00740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-05   24.8   2.4    2.4e-05   24.0   2.4    1.4  1  zf-C2H2_10       C2H2 zinc-finger
     0.0062   16.4   0.0      0.016   15.1   0.0    1.7  1  gag_pre-integrs  GAG-pre-integrase domain
  ------ inclusion threshold ------
       0.35   10.6   1.2       0.93    9.3   1.2    1.7  1  zf-CCHC_4        Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   2.4     4e-09   2.4e-05       5      21 ..     273     289 ..     270     289 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4e-09
  zf-C2H2_10   5 tCSYChetGHtRAkCek 21 
                 +CSYCh +GHtR +C+k
  CCD23108.1 273 KCSYCHIVGHTRDQCFK 289
                 8**************86 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-06     0.016      23      66 ..     485     535 ..     471     536 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-06
  gag_pre-integrs  23 sinlWHrRLGHpsfsrlkkLfkkgllpglkisk.......sevCeaCqlgK 66 
                      ++++ Hr LGH+++++l++ +k++ ++ ++i++        ++C +  +gK
       CCD23108.1 485 PLDVVHRLLGHVNVKSLQQSIKNKTFDHFTIEDidwtgisTFQCITGLQGK 535
                      57889*************************988555555555787777766 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.2   0.00016      0.93      33      47 ..     273     287 ..     269     289 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00016
   zf-CCHC_4  33 fCyiCgvlGHsdkrC 47 
                 +C+ C ++GH++++C
  CCD23108.1 273 KCSYCHIVGHTRDQC 287
                 7************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4055.38
//
Query:       CCD23109.1  [L=358]
Description: hypothetical protein NDAI_0B00750, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-05   24.7   0.3    2.7e-05   23.9   0.3    1.4  1  RVT_2     Reverse transcriptase (RNA-dependent DNA polymerase
     0.0093   15.5   0.3       0.12   11.8   0.1    2.2  2  RVT_1     Reverse transcriptase (RNA-dependent DNA polymerase


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.3     3e-09   2.7e-05     127     208 ..       4      93 ..       1     127 [. 0.80

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 3e-09
       RVT_2 127 llWnekidkvLk.klgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfklkdlgk.....vskf..LGieia 208
                   W++ i+ +L+ kl++++  +   ++++ + ++ li+ l+vdd+++ +++ k+  d  + l+++f  k + +     ++k+  LG+ei 
  CCD23109.1   4 ANWYKLIKGFLTdKLNMTEVLGWPCVFMKRKDKQVLIICLFVDDMILFTNSNKMATDAIELLKTRFATKVINDgkgntINKYdiLGMEIE 93 
                 67********973589999999999*****99999*******************************999875422222555544666665 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   1.4e-05      0.12     159     193 ..      37      71 ..      27      92 .. 0.82
   2 ?    1.4   0.0     0.021   1.9e+02      14      55 ..     281     316 ..     277     339 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.4e-05
                 ...TEEECTTEEEEEESSHHHHHHHHHHHHHHHHH CS
       RVT_1 159 kgvtllrYaDDililskskeelqelleaveewlke 193
                 + + +++++DD++++++s++ +  ++e ++++++ 
  CCD23109.1  37 QVLIICLFVDDMILFTNSNKMATDAIELLKTRFAT 71 
                 45789****************99999999998765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.021
                 ....-THHHHCTB--.........-------HHHH....... CS
       RVT_1  14 llsvdykalnkliakrLkdvlekllsenqpgfrpgrstldav 55 
                 ll+ ++k ++  +++       kl+s++qpg+ ++++  +++
  CCD23109.1 281 LLTALVKEIEDKTIE------LKLISDSQPGIASMKNNDEKI 316
                 677778888888888......7899*********98876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2741.31
//
Query:       CCD23110.1  [L=247]
Description: hypothetical protein NDAI_0B00760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-34  116.7  15.1    6.6e-34  116.7  15.1    2.5  3  Efg1      rRNA-processing protein Efg1
  ------ inclusion threshold ------
        4.4    7.8   5.8        5.1    7.6   0.9    2.5  2  PWWP      PWWP domain


Domain annotation for each model (and alignments):
>> Efg1  rRNA-processing protein Efg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7  15.1   7.4e-38   6.6e-34       1     114 []      30     144 ..      30     144 .. 0.98
   2 ?   -1.9   0.6      0.46   4.1e+03      42      48 ..     162     168 ..     147     186 .. 0.46
   3 ?    0.3   0.4     0.099   8.9e+02      62      83 ..     221     242 ..     210     246 .. 0.66

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 7.4e-38
                 HHHHHHHHHHHHS-SS-.--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH CS
        Efg1   1 lkkkiRdlkRlLakkek.LpaevreekereLkaleaeleeaekkekekklakkYhkvrFfErkKatRklkrlkkqleeledeeekeelekkleelevdl 98 
                 +kk+iRdl+RlL+kk++ Lp++v +eker+L+al+ ele+a+ ++k k++akkYh+vrFfErkKa R++k++  +l++++d++ek+  + +l+e ++dl
  CCD23110.1  30 IKKRIRDLERLLKKKKDiLPDTVIIEKERTLEALKLELENATLRQKIKHNAKKYHMVRFFERKKALRRYKKALNELTSAKDKDEKKIKATELQERKIDL 128
                 7***********9888789******************************************************************************** PP

                 HHHHHS-TTS----SS CS
        Efg1  99 nYvlyyPklekYisLy 114
                 +Yv+++Pk+ekYi+Ly
  CCD23110.1 129 CYVVNFPKTEKYIALY 144
                 ***************9 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.46
                 HHHHHHH CS
        Efg1  42 kkekekk 48 
                 ++ ++ +
  CCD23110.1 162 ENDEKDQ 168
                 1111111 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.099
                 HHHHHHHHHHHHHHHH---HHH CS
        Efg1  62 kKatRklkrlkkqleeledeee 83 
                 +K +Rk  + kk+l+e e+eee
  CCD23110.1 221 RKDERKAGENKKELNEEEEEEE 242
                 4556666666666666655544 PP

>> PWWP  PWWP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.9   0.00056       5.1      26      76 ..      71     118 ..      66     126 .. 0.70
   2 ?    2.7   1.7     0.019   1.7e+02      30      87 ..     119     175 ..     109     186 .. 0.48

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00056
                 CCCCCCHCT---SSSEEEEEETTTTEEEEE-GGGEEE-SHHHHHHHHHTTS CS
        PWWP  26 evpekvlkkkekskelylVkFfgdkeyawvkekdlkpfteedeeeylkkkk 76 
                  +++k++++ +k    ++V+Ff  k+     +k l ++t +++++++k k 
  CCD23110.1  71 TLRQKIKHNAKK---YHMVRFFERKKALRRYKKALNELTSAKDKDEKKIKA 118
                 566677766554...579*****7777666677799999988777665544 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.019
                 CCHCT---SSS........EEEEEETTTTEE.EEE-GGGEEE-SHHHHHHHHHTTSS-HHHHHHHHH CS
        PWWP  30 kvlkkkekske........lylVkFfgdkey.awvkekdlkpfteedeeeylkkkkkkkskkkfkkA 87 
                           e         y+V F ++ +y a+ ++++ +  +e d ++++++ +k  +++  +kA
  CCD23110.1 119 T---------ElqerkidlCYVVNFPKTEKYiALYPNTKNEDDSESDSDNKKENDEK-DQTSRRRKA 175
                 2.........12223355579999999888855555444333333333333333332.223334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2396  (0.133638); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1738.26
//
Query:       CCD23111.1  [L=1958]
Description: hypothetical protein NDAI_0B00770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-120  401.6   0.7    1.1e-80  270.5   0.0    2.6  2  Sec63          Sec63 Brl domain
    6.5e-50  169.3   0.5    1.6e-25   89.9   0.5    3.8  4  DEAD           DEAD/DEAH box helicase
    5.4e-30  104.6   0.0    1.3e-14   54.6   0.0    2.9  2  ResIII         Type III restriction enzyme, res subunit
    6.6e-20   71.5   0.1    1.2e-08   35.3   0.0    4.3  3  Helicase_C     Helicase conserved C-terminal domain
      3e-06   27.7   2.2       0.43   11.0   0.0    4.6  4  AAA            ATPase family associated with various cellular
    2.9e-05   24.4   8.7       0.12   12.7   0.3    5.5  3  AAA_22         AAA domain
    0.00011   21.7   0.0      0.071   12.5   0.0    2.8  2  PhoH           PhoH-like protein
    0.00011   21.9   0.1       0.34   10.6   0.0    4.1  4  IstB_IS21      IstB-like ATP binding protein
    0.00063   18.9   0.0       0.25   10.4   0.0    2.4  2  T2SSE          Type II/IV secretion system protein
     0.0016   18.8   0.1       0.62   10.4   0.2    2.9  2  AAA_19         AAA domain
  ------ inclusion threshold ------
      0.029   14.8   0.0        4.2    7.7   0.0    3.0  2  AAA_16         AAA ATPase domain
       0.13   12.0   0.0       0.34   10.7   0.0    1.6  1  MotA_ExbB      MotA/TolQ/ExbB proton channel family
       0.31   10.4   2.5         22    4.4   0.0    3.7  4  TniB           Bacterial TniB protein


Domain annotation for each model (and alignments):
>> Sec63  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.5   0.0   8.2e-84   1.1e-80       2     257 .]     796    1099 ..     795    1099 .. 0.98
   2 !  128.9   0.2   1.4e-40   1.9e-37       6     242 ..    1631    1942 ..    1626    1954 .. 0.81

  Alignments for each domain:
  == domain 1  score: 270.5 bits;  conditional E-value: 8.2e-84
                  CHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHH.HTSSS--SSSTTSHHHHHHHHHHHHHTT---SSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63    2 telGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLl.ekvpikvkediespeaKvniLlqayisrlklegsdl 97  
                  ++lGr++S++y+  e++++fn+++ p+ t++d+L+++s++sEF+ i++ReeE kel+ L  + v+++v +++++p+ K+n+Llqayis++++ +s+l
  CCD23111.1  796 KDLGRVSSDFYLLNESVEIFNQMCDPRATEADVLSMISMSSEFDGIKFREEEAKELTGLSdSAVECQVGGALDTPQGKTNVLLQAYISQSRIMDSAL 892 
                  79**********************************************************666********************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT................................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
       Sec63   98 vsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds................................................. 145 
                   sD++y++qn  ri+ral+ i ++++w ++++ +l+++k++e+rlw++                                                 
  CCD23111.1  893 SSDANYVAQNSVRICRALFLIGVNRRWGNFSKVMLDICKSIEKRLWSFdhplcqfdlpeniihqirtkrpsmehllelepeelgellhnkkmggkly 989 
                  **********************************************999************************************************ PP

                  .....S--EEEEEEECEBTTSEEEEEEEEEESSSS-SCTSSS-CH..TSBEEEEEEEEETTTTEEEEEEEEEESSTTTTTEEEEEEEEEEE-.SSCC CS
                  .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  146 .....lPkleieaevqpitrsklrvevtiereeeeskpdfpwdkk..gksekfwlvvedsendellaikrvtlekkklastqevkleftvplsepgp 235 
                       +Pk++ie+e+ pi+++++rv+vt++       pdf wd +  g+++ fw++ve+s+++++l++++++l+++ ++  ++++++f++pls+p+p
  CCD23111.1  990 sllsrFPKIQIETEIFPISSNVMRVHVTLK-------PDFIWDGRihGDAQFFWVMVEESDKSQILHFEKFILNRRYVK--NPHEMDFMIPLSDPLP 1077
                  ******************************.......************************************987544..7*************** PP

                  EEEEEEEEESSSSS-EEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  236 kqltvrlisdswlgldqevtis 257 
                  +q++v+++sd+w+g++++++is
  CCD23111.1 1078 PQIVVKAVSDTWIGCESTHAIS 1099
                  ******************9986 PP

  == domain 2  score: 128.9 bits;  conditional E-value: 1.4e-40
                  HHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHT........SSS--SSSTTSHHHHHHHHHHHHHTT---SS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63    6 riaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlek........vpikvkediespeaKvniLlqayisrlkleg 94  
                   +aS+Yyis++ti+l+ +++ ++ t +d+L+ ls a E++++ vR  E   + +L  +        +  +++  i +p++K+++Llqay+sr +l+ 
  CCD23111.1 1631 SVASYYYISHKTIRLLLKQIYNKATFRDVLKWLSLAVEYDDLAVRGGETIMNVELSAQsrysgestFTGEWELPIFDPHVKAFLLLQAYLSRADLPI 1727
                  69******************************************************77466666665555578999********************* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT.............................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................. RF
       Sec63   95 sdlvsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds.............................................. 145 
                   d+++D++++l++  ril+a ++++++ g+++++l++++++++++q++w                                                
  CCD23111.1 1728 ADYIQDTVSVLEQSLRILQAYIDVASELGYFETVLTMIKVMQCIKQGCWYEddqtstlpgctltrhvdmefteqgyplqpkqgllslneigtfsykk 1824
                  *************************************************5559*****************************************999 PP

                  ........................S--EEEEEEECEBTTSEEEEEEEEEESSSS-S......CTSSS-CHTSBEEEEEEEEETTTTEEEEEEEEEES CS
                  ........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  146 ........................lPkleieaevqpitrsklrvevtiereeeesk......pdfpwdkkgksekfwlvvedsendellaikrvtle 212 
                                          lP l+     + i ++k++++ + ++++ ++k      ++fp+ +    ++ w +++  e++el+ +kr++ +
  CCD23111.1 1825 lqslirkfniddedtkqflyitqrLPVLKDIGFKKQIDNDKITLTASHSNNK-STKgfevycSKFPKIQ----KELWFLIG-YEGSELVLLKRCQPR 1915
                  9999888888888888888887776666542333445555555555544333.3334766777777777....55666666.566789999996664 PP

                  STTTTTEEEEEEEEEEE-.SS.CCEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxx RF
       Sec63  213 kkklastqevkleftvplsep.gpkqltvrl 242 
                  +      +ev l++ + ++e+  +++++  l
  CCD23111.1 1916 QH----GKEVVLSCDLLIPEElQNHKIYFLL 1942
                  43....4566666666555551444555444 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.5   1.2e-28   1.6e-25       2     171 ..     290     469 ..     289     475 .. 0.84
   2 ?   -2.2   0.0       2.2     3e+03     153     170 ..     614     629 ..     590     632 .. 0.66
   3 ?   -1.5   0.0       1.3   1.8e+03     114     130 ..     773     789 ..     762     799 .. 0.75
   4 !   74.2   0.0   7.3e-24     1e-20       2     169 ..    1142    1306 ..    1141    1312 .. 0.86

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 1.2e-28
                 HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHS..........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyet..........kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaard 89 
                 +iQ+ ++p ++ +++++l++a+TG+GKT ++l+++l+++ +            + +  k+++v+P+++La +++ ++++ ++  d++v  ++g+  +  
  CCD23111.1 290 QIQSLVYPVAYrTNENMLICAPTGAGKTDIALLAILNAIKQFstanddgeidIQYDDFKVIYVAPLKALAAEIVAKFSEKLSVFDIKVRELTGD-MQ-L 386
                 79********97778*********************999554777777777657777*************************999999866664.44.4 PP

                 HHHHHHTTCSEEEEEHHHHHHHH..HCTSSH.....CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSH CS
                 xxxxxxxxxxxxxxxxxxxxxxx..xxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  90 qlskldngvdivvgtpgrlddll..stgkln.....lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpk 171
                  +s++  +++++v+tp+++d ++       n     +s+v++l++DE++ l ++ ++  i+++++++ ++ ++ ++  +++ lSATlp+
  CCD23111.1 387 TKSEI-IETQVIVTTPEKWDVVTrkA----NgdndlVSKVKLLIIDEVHLLHED-RGSVIETLVARTLRQVESSQSMIRIVGLSATLPN 469
                 56666.69************877542....2234679*************9998.999999998888777777777888********93 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.2
                 CTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxx RF
        DEAD 153 tcdgklqrqvivlSATlp 170
                  +dg    +v++++ATl 
  CCD23111.1 614 FKDGA--IKVLCCTATLA 629
                 33333..55*******95 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.3
                 CTSSHCTTEEEEEEETH CS
                 xxxxxxxxxxxxxxxxx RF
        DEAD 114 tgklnlsqvrflVlDEa 130
                 t   +l++++++V+DE+
  CCD23111.1 773 TAARRLHSLQMIVFDEI 789
                 3444599*********8 PP

  == domain 4  score: 74.2 bits;  conditional E-value: 7.3e-24
                  HHHHHHHHHHH.TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD    2 diQaeaiplil.gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng 97  
                  ++Q  ++++++ ++++v+v  +TGsGKT ++ +++ +++   ++ +g+k+++++P+++L+++ +++++k++ +++   ++ ++g++  d +++   +
  CCD23111.1 1142 PMQTMTFHTLYnTNENVFVGSPTGSGKTVVAELAIWHAF---REFPGKKIVYIAPMKALVRERVDDWSKRFTPVTGDKVVELTGDSLPDPRDVR--D 1233
                  789999999996678*********************999...68****************************9554455578889996666655..8 PP

                  CSEEEEEHHHHHHHH...HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                  xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   98 vdivvgtpgrlddll...stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATl 169 
                  + iv++tp+++d +    +t+k  +++++++++DE++ l ++ +++ ++ i+++++ i +++ +  +++ +S  +
  CCD23111.1 1234 ATIVITTPEKFDGISrnwQTRK-FVKDISLVIMDEIHLLASD-RGPILEMIVSRMNYIASKTGQPIRLLGMSTAV 1306
                  9************997755555.49****************8.************99988877777788887655 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.1   2.8e-15   3.9e-12      15     170 ..     287     468 ..     276     469 .. 0.85
   2 !   54.6   0.0   9.1e-18   1.3e-14      21     166 ..    1145    1303 ..    1113    1307 .. 0.82

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 2.8e-15
                 HT.............TTSEEEEEESTTSTHHHHHHHHHHHH-S..................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS- CS
      ResIII  15 lleklks.......krdkrglikmaTGtGKTlvaaklierllkkgkee.............kflflvprkslleqtleefkkflseaykeigkkvsgdk 93 
                 +l++++s       + ++++li ++TG+GKT +a+ +i +  k+++               k++ ++p k+l      +f++ ls  ++ +  +++gd 
  CCD23111.1 287 TLNQIQSlvypvayRTNENMLICAPTGAGKTDIALLAILNAIKQFSTAnddgeidiqyddfKVIYVAPLKALAAEIVAKFSEKLSV-FDIKVRELTGDM 384
                 55666667777776788999**************9999999988887789******************************999986.456889999999 PP

                 B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS......T.....TTHHHHHT---SEEEEEESS-S CS
      ResIII  94 kkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.....k.....swreilekfkeavllglTATpe 170
                 +   ++++ +++++vtt ++ d     ++ + +  l ++ +++iiDE+H l+++     +     + r++  + +   ++gl+AT++
  CCD23111.1 385 QLT-KSEIIETQVIVTTPEKWDVVT--RKANGDNDLVSKVKLLIIDEVHLLHEDrgsviEtlvarTLRQVESSQSMIRIVGLSATLP 468
                 999.9999**************999..44555666777788************86655516666699999999999*********86 PP

  == domain 2  score: 54.6 bits;  conditional E-value: 9.1e-18
                  .........TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEE CS
      ResIII   21 s.......krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvtt 110 
                          + ++++++  +TG+GKT+va  +i++ +++++ +k++ ++p k+l+    ++++k + + + ++  +++gd+     +d  ++ i++tt
  CCD23111.1 1145 TmtfhtlyNTNENVFVGSPTGSGKTVVAELAIWHAFREFPGKKIVYIAPMKALVRERVDDWSKRFTPVTGDKVVELTGDSLPD-PRDVRDATIVITT 1240
                  044444548899999*******************************************9999999998888889999999999.9999********* PP

                  HHHHHHTH........HHHTTT-SEEEEETGGGTTS..........TTTHHHHHT-.--SEEEEEE CS
      ResIII  111 iqsldadseeeeeeseellrdrfdviiiDEaHrlgak.........kswreilekf.keavllglT 166 
                   +++d +s   +++++++  + + ++i+DE H l+++         + ++ i+ k  ++  llg++
  CCD23111.1 1241 PEKFDGIS---RNWQTRKFVKDISLVIMDEIHLLASDrgpilemivSRMNYIASKTgQPIRLLGMS 1303
                  ********...99*********************99755444333336666654444667777776 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.2   4.4e+03      81     109 ..      78     106 ..      77     107 .. 0.87
   2 !   35.3   0.0   8.4e-12   1.2e-08       7     111 .]     526     673 ..     519     673 .. 0.67
   3 !   30.3   0.0   3.1e-10   4.2e-07      35     109 ..    1423    1507 ..    1357    1509 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.2
                 TSTTESEEEESSSSSSHHHHHHHHTTSSS CS
  Helicase_C  81 dipkvnlVinfdlprnvtsyiqriGRtgR 109
                  +++++ V+    + nvts+ + i R  R
  CCD23111.1  78 SFEQLQSVVESYKKGNVTSIYHKINRLVR 106
                 677888999999999***********998 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 8.4e-12
                 HHHHHHTTTTSEEEEEESSHH.HH..........................HHHHHH.............HHHTTSTEEEESTTSTHHHHHHHHHHHHTT CS
  Helicase_C   7 lellkleeeggkilifvntid.rl..........................ekvkll.............lekkgikvavlhgelpqnereeileqfnkg 65 
                 l   ++ ++g+++++fv+ ++ ++                          +                  +e +++ + v+h+ ++ ++r+ + + f++g
  CCD23111.1 526 L---EMIQRGYQVMVFVHARKeTVkssrtfikmaqsnaeidlfapdpstkD----RyskqlaknrdkdlKELFQFGFGVHHAGMSRSDRNLTEKMFKDG 617
                 3...44478888888888888422333444444444444444444444331....0333333333333377779************************* PP

                 SSSEEEESGGGTSSSTSTTESEEEESSSS...........SSHHHHHHHHTTSSSTT CS
  Helicase_C  66 esdvLiatdvaerGidipkvnlVinfdlp...........rnvtsyiqriGRtgRag 111
                  ++vL +t  ++ G+++p +++Vi+ + +            +++++iq  GR+gR g
  CCD23111.1 618 AIKVLCCTATLAWGVNLP-ADCVIIKGTQvydskkggfidLGISDVIQIFGRAGRPG 673
                 *****************9.788886666655444544444446************75 PP

  == domain 3  score: 30.3 bits;  conditional E-value: 3.1e-10
                  HHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS...........SSHHHHHHHHTTSSS CS
  Helicase_C   35 llekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp...........rnvtsyiqriGRtgR 109 
                  l+   ++ +  +h+ l  ++r  + + f ++++++Liat+ ++ G+++p ++lVi+ + +            ++t++ q++GR+gR
  CCD23111.1 1423 LKLALQFGIGLHHAGLVEKDRSISHRLFEQNKVRILIATSTLAWGVNLP-AHLVIIKGTQffdkkiqgykdMDLTDILQMMGRAGR 1507
                  22233789999*************************************9.899996666665555766544446************ PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   1.6   0.00048      0.66      11     111 ..     356     466 ..     306     481 .. 0.66
   2 ?   -1.6   0.0       2.5   3.5e+03      43      74 ..     765     796 ..     762     832 .. 0.77
   3 !   11.0   0.0   0.00031      0.43       5      92 ..    1162    1285 ..    1158    1311 .. 0.67
   4 ?   -1.4   0.0       2.1   2.9e+03      23      55 ..    1471    1504 ..    1458    1567 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00048
                 HHHHHHHHHHHH.THEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHH CS
         AAA  11 KTllakavakel.gvefleisgsellsk............yvgesekkirelfkeakeka....kpsilfiDEidalaksrsgseseeeervvnqLlte 92 
                 K l+a+ vak + + +++ i++ el+ +            ++  +++k   + ++a   +    k + l+iDE++ l+++r     ++ e++v+     
  CCD23111.1 356 KALAAEIVAKFSeKLSVFDIKVRELTGDmqltkseiietqVIVTTPEKWDVVTRKANGDNdlvsKVKLLIIDEVHLLHEDR----GSVIETLVAR---T 447
                 334444444443335588888888885568999999999888899999999999998888999666***************....3333333333...4 PP

                 HHHTTTSSSTEEEEEEESS CS
         AAA  93 ldgvkkkeskvivigatnr 111
                 l +v++++s + ++g + +
  CCD23111.1 448 LRQVESSQSMIRIVGLSAT 466
                 5555555556777777655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA  43 ekkirelfkeakekakpsilfiDEidalaksr 74 
                 e++ r+++++a++  +   +++DEi   + s+
  CCD23111.1 765 ERRKRMIVTAARRLHSLQMIVFDEISMHFISK 796
                 5667888999988885699999**97666555 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00031
                  SSTTSSHHHHHHHHHHHH.....THEEEEEETTTCS.SS...................................STTHHHHHHHHHHHHHHHTS... CS
         AAA    5 GppGtGKTllakavakel.....gvefleisgsell.sk...................................yvgesekkirelfkeakeka... 57  
                   p G GKT +a+  + ++     g +++ i  ++ l  +                                   +v  +++k+ ++ ++ ++ +   
  CCD23111.1 1162 SPTGSGKTVVAELAIWHAfrefpGKKIVYIAPMKALvRErvddwskrftpvtgdkvveltgdslpdprdvrdatIVITTPEKFDGISRNWQTRKfvk 1258
                  478*********99999755444333333333333312245555555555555555556777777779******9**************99999995 PP

                  TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHH CS
         AAA   58 kpsilfiDEidalaksrsgseseeeervvnqLlte 92  
                  + s +++DEi+ la++r          +++ +++ 
  CCD23111.1 1259 DISLVIMDEIHLLASDR--------GPILEMIVSR 1285
                  56************999........3444444444 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 2.1
                  THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHH CS
         AAA   23 gvefleisgsell.skyvgesekkirelfkeake 55  
                   ++++ i+g++++ +k++g + +++ ++++ + +
  CCD23111.1 1471 PAHLVIIKGTQFFdKKIQGYKDMDLTDILQMMGR 1504
                  4789999999999788999999999999987643 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1       0.2   2.7e+02      38      90 ..      52     109 ..      37     209 .. 0.79
   2 !   12.7   0.3   8.6e-05      0.12       6     117 ..     304     450 ..     300     461 .. 0.58
   3 !    9.6   0.1   0.00076         1      82     131 ..    1247    1303 ..    1154    1307 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.2
      AAA_22  38 erpevvfvtlpsstsskdllrellralglelka.....erlsseellealeqalrara 90 
                  + ++++v ++ +++++d+++e+  +  ++l +     + ++   +++++++ +r++ 
  CCD23111.1  52 DNTTTLTVLAQDKNEWDDIYKEFDDISFEQLQSvvesyKKGNVTSIYHKINRLVRSCT 109
                 5666778888888888888888888777777777777766666667777777777664 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 8.6e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.................erpevvfvtlpsstsskdllrellralglelka................. 70 
                   +++++++G+GKT  +     ++ ++ + ++                 +         p +     l+ e++ ++ ++l+                  
  CCD23111.1 304 ENMLICAPTGAGKTDIALLAILNAIKQFSTANddgeidiqyddfkviyvA---------PLK----ALAAEIVAKFSEKLSVfdikvreltgdmqltks 389
                 5689**********999888888866666666888888885333333221.........222....333333333333333333446666666555555 PP

      AAA_22  71 .........erlsseellealeqalrarav........ielliiDEaqhlr..seealeeL..rslln 117
                                      ++ + ++a         ++lliiDE++ l   +  ++e+L  r+l  
  CCD23111.1 390 eiietqvivT-------TPEKWDVVTRKANgdndlvskVKLLIIDEVHLLHedRGSVIETLvaRTLRQ 450
                 5643333332.......24444444444446666777899**********665588889886555544 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00076
      AAA_22   82 leqalrarav...ielliiDEaqhlr..seealeeLrsllnl..srkgvqliLvGtp 131 
                  + +++++r+    i+l+i DE++ l   +  +le ++s++n   s++g ++ L G+ 
  CCD23111.1 1247 ISRNWQTRKFvkdISLVIMDEIHLLAsdRGPILEMIVSRMNYiaSKTGQPIRLLGMS 1303
                  445555555567789**********8766*************999999999999985 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0057       7.9      15      47 ..     299     331 ..     284     335 .. 0.75
   2 !   12.5   0.0   5.2e-05     0.071       6      58 ..    1141    1194 ..    1137    1203 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0057
                 HHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT CS
        PhoH  15 alkkndivfaiGpaGtGKtylavalavealkkk 47 
                 a ++n+ + + +p+G+GKt +a+ + ++a+k+ 
  CCD23111.1 299 AYRTNENMLICAPTGAGKTDIALLAILNAIKQF 331
                 34478888999********99999988888774 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.2e-05
                  SHHHHHHHHHHH.H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S CS
        PhoH    6 tkeQkeylealk.kndivfaiGpaGtGKtylavalavealkkkkvkriiltrpa 58  
                  +  Q+ ++++l  +n+ vf+  p+G+GKt +a  +  +a+++   k+i+++ p+
  CCD23111.1 1141 NPMQTMTFHTLYnTNENVFVGSPTGSGKTVVAELAIWHAFREFPGKKIVYIAPM 1194
                  56788888888768999*****************999************99886 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00025      0.34      19      70 ..     272     326 ..     260     333 .. 0.68
   2 ?   -1.0   0.0      0.89   1.2e+03     106     123 ..     418     435 ..     409     447 .. 0.82
   3 ?   -0.5   0.0      0.64   8.9e+02      94     125 ..     766     797 ..     762     809 .. 0.84
   4 ?    4.8   0.0     0.015        21      44      82 ..    1152    1192 ..    1134    1207 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00025
   IstB_IS21  19 ledidfraarsldkrkvkeLatlsf...iekkenivllGpsGvGKshlaialgve 70 
                 +ed+d+      + ++++++++l +    +++en++++ p+G+GK+ +a     +
  CCD23111.1 272 VEDLDYYCRSVFKYETLNQIQSLVYpvaYRTNENMLICAPTGAGKTDIALLAILN 326
                 4566665555555555555555444322689***************999755455 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.89
   IstB_IS21 106 llkvdllilDdlgllpld 123
                 + kv+lli+D++ ll+ d
  CCD23111.1 418 VSKVKLLIIDEVHLLHED 435
                 5799*******9987765 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.64
   IstB_IS21  94 rrdgklaralkrllkvdllilDdlgllpldqa 125
                 rr+  + +a++rl   ++++ D+++++ ++++
  CCD23111.1 766 RRKRMIVTAARRLHSLQMIVFDEISMHFISKD 797
                 5666778899999999********99988876 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.015
   IstB_IS21   44 iekkenivllGpsGvGKshlaialgveavr..aglsvlfvr 82  
                   +++en+ +  p+G GK+ +a     +a r   g++++++ 
  CCD23111.1 1152 YNTNENVFVGSPTGSGKTVVAELAIWHAFRefPGKKIVYIA 1192
                  5789****************975555555536688888864 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00018      0.25     124     173 ..     298     344 ..     244     363 .. 0.74
   2 !    5.9   0.0    0.0043       5.9     122     149 ..    1148    1175 ..    1094    1191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
       T2SSE 124 kavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleg 173
                  a r++ ++l+  +Tg GKt +  all+++n+  +++ t+ D  Ei+++ 
  CCD23111.1 298 VAYRTNENMLICAPTGAGKTDI--ALLAILNAI-KQFSTANDDGEIDIQY 344
                 34456789************76..678888888.889*****99998865 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0043
       T2SSE  122 lrkavrerglilvsGgTgsGKttllyal 149 
                   ++  +++ ++ v  +TgsGKt+++  +
  CCD23111.1 1148 FHTLYNTNENVFVGSPTGSGKTVVAELA 1175
                  44555568999************98544 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.2   0.00045      0.62       8     128 ..     301     446 ..     297     462 .. 0.64
   2 ?    4.9   0.0     0.022        30       9      52 ..    1154    1195 ..    1147    1289 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00045
      AAA_19   8 lkekvllvtaGpGtGKTrv.lkhivallvelggvkp..........eeillvaftgrAakelrerlaalgae......................atTiH 73 
                  +++++l+ a+ G GKT + l +i++ +++  + +            +++ va+ +  a e+  +     ++                      +    
  CCD23111.1 301 RTNENMLICAPTGAGKTDIaLLAILNAIKQFSTANDdgeidiqyddFKVIYVAPLKALAAEIVAKF---SEKlsvfdikvreltgdmqltkseiI---- 392
                 57899************98344445555555544449999*****989999998887666665544...22211233334433333322221111.... PP

      AAA_19  74 rlalldfddlltealelle................eaeeekklqeee.llivDEfqdvdelqyrLlkallge 128
                                   e                +a+ +++l ++  lli+DE+  + e   +++++l+ +
  CCD23111.1 393 ------------------EtqvivttpekwdvvtrKANGDNDLVSKVkLLIIDEVHLLHEDRGSVIETLVAR 446
                 ..................122222345555566667788888888888*******99998888888887754 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.022
      AAA_19    9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftg 52  
                  ++++++v  + G+GKT v + ++ ++ ++   + ++i+ +a+ +
  CCD23111.1 1154 TNENVFVGSPTGSGKTVVAELAIWHAFREF--PGKKIVYIAPMK 1195
                  56789999999*****99988888877776..558999999865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0     0.003       4.2       7      88 ..     286     361 ..     280     458 .. 0.56
   2 ?    3.4   0.0     0.065        90      25      50 ..    1156    1181 ..    1146    1245 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.003
      AAA_16   7 eeleqLlsalervrsgrpelvllsGesGvGKsslv.rellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88 
                 e l+q++s++ +v+  + e++l+  + G GK+ ++  ++l  + k+    +++ +d+ e +i y+ +  +      l++l++e
  CCD23111.1 286 ETLNQIQSLVYPVAYRTNENMLICAPTGAGKTDIAlLAIL-NAIKQ----FSTANDDGEIDIQYDDFKVIY-V-APLKALAAE 361
                 67899******9988888***************9955666.45555....566666666666664433333.1.233333333 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.065
      AAA_16   25 elvllsGesGvGKsslvrellralek 50  
                  e+v++  + G+GK+ +++ +  ++ +
  CCD23111.1 1156 ENVFVGSPTGSGKTVVAELAIWHAFR 1181
                  799*************9655444444 PP

>> MotA_ExbB  MotA/TolQ/ExbB proton channel family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00024      0.34      35      77 ..    1731    1773 ..    1720    1779 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00024
                  HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MotA_ExbB   35 lsreeerlekglsilatigslaPllGLlGTVlGlieafqalad 77  
                  ++ + + le++l+il++ + +a  lG + TVl +i+++q +++
  CCD23111.1 1731 IQDTVSVLEQSLRILQAYIDVASELGYFETVLTMIKVMQCIKQ 1773
                  67778889******************************99876 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.047        65      22      52 ..     290     320 ..     278     397 .. 0.73
   2 ?    4.4   0.0     0.016        22     119     135 ..     420     436 ..     401     463 .. 0.81
   3 ?   -3.9   0.1       5.5   7.6e+03     116     129 ..     777     790 ..     765     792 .. 0.69
   4 ?   -0.4   0.0      0.48   6.6e+02     121     167 ..    1261    1307 ..    1255    1311 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.047
        TniB  22 rLeeLleypkrkrm.pnlllvGdsnnGKtmiv 52 
                 ++++L+ yp + r+ +n+l++ ++  GKt i+
  CCD23111.1 290 QIQSLV-YPVAYRTnENMLICAPTGAGKTDIA 320
                 444444.566666659*************985 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.016
        TniB 119 kvrvLiiDEihnllags 135
                 kv++LiiDE+h l + +
  CCD23111.1 420 KVKLLIIDEVHLLHEDR 436
                 89*********887654 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 5.5
        TniB 116 relkvrvLiiDEih 129
                 r  +++++++DEi 
  CCD23111.1 777 RLHSLQMIVFDEIS 790
                 445689******85 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.48
        TniB  121 rvLiiDEihnllagsarkqreflnalksLgnelkipivlvGteealr 167 
                   ++i+DEih l + +    + ++  + ++  +   pi l+G  +a++
  CCD23111.1 1261 SLVIMDEIHLLASDRGPILEMIVSRMNYIASKTGQPIRLLGMSTAVS 1307
                  689*******9999999999999999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1958 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.12u 0.29s 00:00:01.41 Elapsed: 00:00:00.47
# Mc/sec: 12417.71
//
Query:       CCD23112.1  [L=1348]
Description: hypothetical protein NDAI_0B00780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-51  174.4   0.0    1.2e-42  145.4   0.0    2.6  2  AAA              ATPase family associated with various cellul
    4.6e-10   39.1   0.0    1.2e-09   37.8   0.0    1.6  1  AAA_lid_3        AAA+ lid domain
    3.8e-07   30.4   0.0    2.6e-05   24.4   0.0    2.8  2  AAA_2            AAA domain (Cdc48 subfamily)
      2e-06   27.7   0.0    0.00014   21.6   0.0    2.4  2  IstB_IS21        IstB-like ATP binding protein
    9.6e-06   26.1   0.2    0.00016   22.1   0.1    2.8  2  AAA_16           AAA ATPase domain
    2.3e-05   24.4   0.0    0.00092   19.2   0.0    3.4  3  AAA_5            AAA domain (dynein-related subfamily)
    3.3e-05   24.0   0.0       0.44   10.7   0.0    2.5  2  Sigma54_activ_2  Sigma-54 interaction domain
     0.0002   20.7   0.0      0.022   14.0   0.0    2.2  2  TIP49            TIP49 P-loop domain
    0.00024   21.2   0.0     0.0056   16.7   0.0    3.1  2  ResIII           Type III restriction enzyme, res subunit
    0.00038   20.2   0.0       0.68    9.6   0.0    3.0  2  Sigma54_activat  Sigma-54 interaction domain
    0.00043   20.6   1.8       0.15   12.4   0.2    4.4  4  AAA_22           AAA domain
    0.00088   18.8   0.0        0.2   11.2   0.0    2.4  2  AAA_7            P-loop containing dynein motor region
     0.0048   16.9   0.0      0.038   14.0   0.0    2.6  1  AAA_14           AAA domain
     0.0073   15.7   0.0       0.13   11.7   0.0    2.2  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0094   16.3   0.0      0.051   14.0   0.0    2.3  1  RNA_helicase     RNA helicase
     0.0098   16.4   0.2       0.19   12.3   0.0    3.5  2  AAA_18           AAA domain
  ------ inclusion threshold ------
      0.012   16.1   6.5      0.042   14.4   0.0    3.8  3  ABC_tran         ABC transporter
      0.021   14.3   0.0       0.31   10.5   0.0    2.3  2  PhoH             PhoH-like protein
      0.023   14.9   0.0      0.079   13.1   0.0    2.0  1  AAA_33           AAA domain
      0.037   13.9   0.1      0.099   12.5   0.0    1.8  1  AAA_3            ATPase family associated with various cellul
      0.059   12.5   0.0       0.75    8.8   0.0    2.2  2  Parvo_NS1        Parvovirus non-structural protein NS1
      0.068   12.9   0.0        0.2   11.4   0.0    1.8  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.071   12.7   0.0        0.3   10.6   0.0    2.1  1  AAA_25           AAA domain
      0.089   12.9   1.9       0.15   12.2   0.1    2.3  1  Bromodomain      Bromodomain
       0.51   10.1   0.0       0.51   10.1   0.0    4.2  2  AAA_11           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.4   0.0   1.7e-45   1.2e-42       1     132 []     452     587 ..     452     587 .. 0.95
   2 !   26.3   0.0   1.1e-08   8.1e-06       2     111 ..     769     870 ..     768     890 .. 0.83

  Alignments for each domain:
  == domain 1  score: 145.4 bits;  conditional E-value: 1.7e-45
                 EEEESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel.....gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteld 94 
                 vl++GppGtGKTl+a+a+a ++     +++f+  +g+++lsk+vge+e+++r lf+eak+++ psi+f+DEid la+ rs+++++ + ++v++Ll+ +d
  CCD23112.1 452 VLFHGPPGTGKTLMARALAASCssdsqKITFFMRKGADILSKWVGEAERQLRLLFEEAKKHQ-PSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMD 549
                 79*******************855555699*******************************9.************************************ PP

                 HTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  95 gvkkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 g++++ ++vivigatnrpd +dpal+r gRfdr+++++l
  CCD23112.1 550 GMDNR-GQVIVIGATNRPDAVDPALRRpGRFDREFYFPL 587
                 ****7.66****************************985 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 1.1e-08
                 EEESSTTSSHHHHHHHHHHHH.THEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   2 llyGppGtGKTllakavakel.gvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +++Gp G G  ++  a+ + l + ++ ++++++l+s++ + +e+ + + f ea++ + ps+++i +id   ++          +++++L + l  ++ +
  CCD23112.1 769 IITGPSGNGQQYISAAILNYLdKYNVQKLDLASLFSETTKSMEATVVQSFIEARKRQ-PSVILIPNIDIWLRTV-------PPSIISTLSSLLRSLQGS 859
                 789******************5699*******************************8.************9999.......455555555555555554 PP

                 SSTEEEEEEESS CS
         AAA 100 eskvivigatnr 111
                  +k+++++++ +
  CCD23112.1 860 -EKILLLAIGED 870
                 .33888888877 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   1.6e-12   1.2e-09       4      41 ..     613     650 ..     610     654 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.6e-12
   AAA_lid_3   4 lkeLAerTeGySGADlaalcreAallAlrrgikeitme 41 
                 +++LA +T+Gy GADl alc eAal +++r++++i  +
  CCD23112.1 613 IDNLATLTKGYGGADLRALCTEAALFCIQRKFPQIYRS 650
                 799*****************************998766 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   3.7e-08   2.6e-05       6     105 ..     452     550 ..     448     558 .. 0.75
   2 ?    2.6   0.0      0.19   1.3e+02       6      78 ..     768     835 ..     765     843 .. 0.87

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 3.7e-08
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS...EEEEETGGG-------------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpkessgadvSregVqrdLLq 101
                 +l+ gp g+Gkt++a+ala   + ++++k++ + +++ +    +++ v + + +     + +++    i+++DEid  +p +ss+++  +  ++  LL 
  CCD23112.1 452 VLFHGPPGTGKTLMARALAASCS-SDSQKIT-FFMRKGAD--ILSKWVGEAERQLRLLFEEAKKHqpsIIFFDEIDGLAPVRSSKQEQIHASIVSTLLA 546
                 689*******************9.4555544.44666555..34455554444444433333332566*************99999999999******* PP

                 HHH- CS
       AAA_2 102 ileg 105
                 +++g
  CCD23112.1 547 LMDG 550
                 **98 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.19
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGG CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEid 78 
                 ++++gp+g G+++++ a+ ++l+   + ++  +d  +l    e  ++ +  ++++    ++ +  ++l+ +id
  CCD23112.1 768 LIITGPSGNGQQYISAAILNYLD---KYNVQKLDLASLFS--ETTKSMEATVVQSFIEARKRQPSVILIPNID 835
                 5789******************9...78999999888888..7888888888888888999999999998887 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     2e-07   0.00014      47     130 ..     449     536 ..     435     546 .. 0.82
   2 ?    3.3   0.0     0.085        61      49      67 ..     767     785 ..     741     830 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2e-07
   IstB_IS21  47 kenivllGpsGvGKshlaialgveavraglsvlfvr...vedLveelkrarrdgklaralkrllkvdllilDdl.gllpldqaeaell 130
                   ++++ Gp+G+GK+ +a al+ +   +  +++f+    ++ L + +  a+r+ +l  + ++  +++++  D++ gl p+ + ++e++
  CCD23112.1 449 PRGVLFHGPPGTGKTLMARALAASCSSDSQKITFFMrkgADILSKWVGEAERQLRLLFEEAKKHQPSIIFFDEIdGLAPVRSSKQEQI 536
                 568999*******************9999999987523234466779999******99999999*********978888877776665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.085
   IstB_IS21  49 nivllGpsGvGKshlaial 67 
                  ++++GpsG G  ++++a+
  CCD23112.1 767 RLIITGPSGNGQQYISAAI 785
                 589************9998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   2.3e-07   0.00016      23     135 ..     448     556 ..     439     561 .. 0.64
   2 ?   -0.4   0.0       1.8   1.3e+03     108     163 ..     799     854 ..     725     865 .. 0.60

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.3e-07
      AAA_16  23 rpelvllsGesGvGKsslvrellralekd..ggif.lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea.s 117
                  p+ vl++G++G+GK+ ++r+l+ + + d  ++ f +r  +d l      s ++  ++r +l r l +ea++ +++       + la+v++ + ++   
  CCD23112.1 448 PPRGVLFHGPPGTGKTLMARALAASCSSDsqKITFfMRKGADIL------SKWVGEAER-QL-RLLFEEAKKHQPSIIFFDEIDGLAPVRSSKQEQIhA 538
                 4699*******************988888876555377777777......778888834.55.555555444444444444444444444444444457 PP

      AAA_16 118 rllellkrllallsrder 135
                 ++  +l +l++ + ++++
  CCD23112.1 539 SIVSTLLALMDGMDNRGQ 556
                 777777777777777555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.8
      AAA_16 108 vpelagaeasrllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlrlle 163
                  ++l ++  +++ +++ + +  +++ ++p v+++ +++ w+++ + +++++L +ll 
  CCD23112.1 799 LASLFSETTKSMEATVVQSFIEARK-RQPSVILIPNIDiWLRTVPPSIISTLSSLLR 854
                 3333333334444444444445555.4568888888888888888887777776655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.3e-06   0.00092       2     135 ..     452     574 ..     451     576 .. 0.68
   2 ?   -0.1   0.0       1.2   8.4e+02      31      69 ..     726     764 ..     720     765 .. 0.91
   3 ?   -1.6   0.0       3.4   2.4e+03       2      27 ..     768     794 ..     767     807 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.3e-06
                 EEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE. CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrlll 96 
                 vl  GppGtgK+ +a+ laa     ++  +  ++   + +d++ ++    g+++++   l ++a+  +++i+++DE++ + +   ++  ++       l
  CCD23112.1 452 VLFHGPPGTGKTLMARALAASCssDSQKITFFMR---KGADILSKWV---GEAERQLRLLFEEAKkhQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTL 544
                 8999******************743333333333...469*******...9**************999*********9766544444333322222222 PP

                 .-SSSEEE---......-EEEEEESS--.-TT-TTHHHH CS
       AAA_5  97 eeggelvkaknddllerfrviatanpldrslnelspalr 135
                   +   ++ +      ++ vi+++n++d     ++palr
  CCD23112.1 545 LALMDGMDNRG-----QVIVIGATNRPD----AVDPALR 574
                 22222222222.....277777777777....5666666 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
                 E--TT--HHHHH--B--.........--------G-SEE CS
       AAA_5  31 qltrdtteedlkgrreikngttslvdsplvraaregeil 69 
                 ++ r++++edl   +  +n t ++ + +l++++++++i+
  CCD23112.1 726 LIERYIEYEDLNSDLAEDNNTLEFNKHKLMKQIEQARIC 764
                 688999*********988****************99997 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.4
                 EEEE--SSSSHHHHHHHGGGGB.S--E CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nrev 27 
                 +++ Gp+G g   ++  ++  l + +v
  CCD23112.1 768 LIITGPSGNGQQYISAAILNYLdKYNV 794
                 799********9999999888865555 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00067      0.48      24      77 ..     452     508 ..     447     557 .. 0.73
   2 !   10.7   0.0   0.00061      0.44       9      66 ..     753     811 ..     750     884 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00067
                      EEEEEETT--HHHHHHCC--TTS-EE-..-SSTTHHHH-HHHHHHHTTTSE.EEEEE CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgpwle..ifvverlaklpldlleqakggt.Lylkd 77 
                      v+  G++G+gk+l+Ar+L+ + + +++   f + ++a++ ++++ +a+ ++ L++++
       CCD23112.1 452 VLFHGPPGTGKTLMARALAASCSSDSQkiTFFMRKGADILSKWVGEAERQLrLLFEE 508
                      8999**************988777665223556788888877777764332133333 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00061
                      HHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC.--TTS-EE--SSTTHHHH-HHHHHH CS
  Sigma54_activ_2   9 elkerLeqaaqsklpvfltGekGsgkelvArlL.hknsgpwleifvverlaklpldlle 66 
                      +l +++eqa+  k  + +tG+ G g+++++ ++    +  +++  ++++l +++ +++e
       CCD23112.1 753 KLMKQIEQARICKPRLIITGPSGNGQQYISAAIlNYLDKYNVQKLDLASLFSETTKSME 811
                      7899************************9865404455555555566665554433333 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.1e-05     0.022      50      97 ..     449     499 ..     403     508 .. 0.79
   2 ?    4.2   0.0     0.029        21      40      98 ..     755     812 ..     751     823 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.1e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  50 GravLlaGpsgtGktalaiaiskelg...edvpfvalsgsevyslevkkte 97 
                  r+vL+ Gp+gtGkt +a a++ + +   +++ f + +g+++ s  v  +e
  CCD23112.1 449 PRGVLFHGPPGTGKTLMARALAASCSsdsQKITFFMRKGADILSKWVGEAE 499
                 499************999999988864457899*9999**99998776665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.029
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  40 velikekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktev 98 
                 ++ i++ +++   ++++Gpsg G+  ++ ai + l  +    +l  + ++s   k  e+
  CCD23112.1 755 MKQIEQARICKPRLIITGPSGNGQQYISAAILNYLD-KYNVQKLDLASLFSETTKSMEA 812
                 6779999***999******************99998.6777888888888888887776 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.9e-06    0.0056      22      84 ..     447     512 ..     419     557 .. 0.68
   2 ?   -0.1   0.1       1.1   8.2e+02      42     119 ..     812     916 ..     751     935 .. 0.61

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 7.9e-06
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHH....HHGGGGTGG.... CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtl....eefkkflseayke 84 
                 +  + +l++ + GtGKTl+a +l++++++  +++ ++f+  + ++l+++     ++++ +++ea+k 
  CCD23112.1 447 TPPRGVLFHGPPGTGKTLMARALAASCSSD-SQKITFFMRKGADILSKWVgeaeRQLRLLFEEAKKH 512
                 6677899********************997.556999999999******944444444555555444 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
                 HHHHHHH-S.....-EEEEESSHHHHHHHH........HHGGGGTGG........GEEEESSS-B--......................-SEEEEEHHH CS
      ResIII  42 aklierllkkgkeekflflvprkslleqtl........eefkkflseayke....igkkvsgdkkka...............kekdstnkkilvttiqs 113
                 a +++++ +++k++  ++l+p++++  +t         + + + l+   k     ig+++s+d+  +               ke +++++  ++ ti s
  CCD23112.1 812 ATVVQSFIEARKRQPSVILIPNIDIWLRTVppsiistlSSLLRSLQGSEKIlllaIGEDISSDQIASeplsqlslsrnifylKEPSTKQRTEYFNTIAS 910
                 555666666666667777777777777766554443332222222222222555555555555555555555666666666666666666666666666 PP

                 HHHTH. CS
      ResIII 114 ldadse 119
                 l + ++
  CCD23112.1 911 LLKTKP 916
                 666665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00095      0.68      24      52 ..     451     479 ..     439     588 .. 0.88
   2 !    6.8   0.0    0.0069       4.9       9      48 ..     752     791 ..     747     816 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00095
                      -EEEECSTTSSHHHHHHHHHHHSTTTTS- CS
  Sigma54_activat  24 svlitGesGtGKellaraiheaskrkekp 52 
                       vl +G  GtGK+l+ara+ ++ + ++++
       CCD23112.1 451 GVLFHGPPGTGKTLMARALAASCSSDSQK 479
                      69*****************9865554443 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0069
                      HHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTT CS
  Sigma54_activat   9 kelleqikkvaktdlsvlitGesGtGKellaraiheaskr 48 
                      ++l++qi+++   + +++itG sG G ++++ ai +  ++
       CCD23112.1 752 HKLMKQIEQARICKPRLIITGPSGNGQQYISAAILNYLDK 791
                      57899999999999*****************999876554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   0.00021      0.15       9      31 ..     453     475 ..     448     568 .. 0.57
   2 ?   -1.3   0.0       3.4   2.5e+03      38      91 ..     649     703 ..     633     710 .. 0.73
   3 ?    1.4   0.0      0.48   3.4e+02      33     118 ..     758     855 ..     744     876 .. 0.64
   4 ?   -2.5   0.0       7.9   5.7e+03      42      71 ..     890     927 ..     869     971 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00021
      AAA_22   9 vvtGesGtGKTtllrrlleqlde 31 
                 + +G++GtGKT+ +r l+ +   
  CCD23112.1 453 LFHGPPGTGKTLMARALAASCSS 475
                 689**************998643 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.4
      AAA_22  38 erpevvfvtlpsst.sskdllrellralglelkaerlsseell.ealeqalrarav 91 
                 ++ e ++v+++ ++ +++d++ +l +++ +++ + ++ss e l + +   l++++ 
  CCD23112.1 649 RSNEKLLVDPKDLKvTPTDFMLALEKIVPSSARS-TGSSPEPLpDSIKPLLERQFE 703
                 667778999999999*********9999999999.554444444777777777766 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.48
      AAA_22  33 akaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav..........ielliiDEaqh.lr..seealeeLrsllnl 118
                 +++++ +++ + +t ps+++++ +  ++l+ l+  +    l++  l++  ++ ++a+ v          +++++i +++  lr  ++ ++++L+sll  
  CCD23112.1 758 IEQARICKPRLIITGPSGNGQQYISAAILNYLDKYNVQ-KLDLASLFSETTKSMEATVVqsfiearkrqPSVILIPNIDIwLRtvPPSIISTLSSLLRS 855
                 44444577777888899999999999999888866666.444444444444444444444444444458889999999888876557777777776664 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 7.9
      AAA_22  42 vvfvtlpsstsskdllrellralglelka........e 71 
                 +++ + ps + +++ ++ +++ l+ +  +        +
  CCD23112.1 890 IFYLKEPSTKQRTEYFNTIASLLKTKPTSfhqlqkraK 927
                 34555566667777777777777766655555444440 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00028       0.2      34      65 ..     450     481 ..     441     522 .. 0.87
   2 ?    4.9   0.0     0.022        16      35      91 ..     767     824 ..     752     828 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00028
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkekylsl 65 
                 + vl+ Gp GtGKt++++ l  ++++++ +++
  CCD23112.1 450 RGVLFHGPPGTGKTLMARALAASCSSDSQKIT 481
                 679****************9999986655444 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.022
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltin.fsaqtsanqlqdiiesklekrrk 91 
                  ++++Gp+G G   i   +l+ ldk +++ l +  + + t+ ++  ++++s +e r++
  CCD23112.1 767 RLIITGPSGNGQQYISAAILNYLDKYNVQKLDLAsLFSETTKSMEATVVQSFIEARKR 824
                 57899*******9999999999998888877664344445555555666777776665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   5.3e-05     0.038       5     102 ..     452     564 ..     449     587 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.3e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderd..kkladpekllelileklkeekktylflDEiqev............pewekalkslvd. 88 
                 ++  G+  +GKT +++ l+ +   ++++i ++  +  +   k   + e+ l+l++e++k+++ +++f+DEi  +             ++ ++l  l+d 
  CCD23112.1 452 VLFHGPPGTGKTLMARALAASCSSDSQKITFFMRKGADIlsKWVGEAERQLRLLFEEAKKHQPSIIFFDEIDGLapvrsskqeqihASIVSTLLALMDg 550
                 56789999**********988886666666665555555323333555667888888777799********9998888888888887778888888884 PP

      AAA_14  89 egknldvivtGSns 102
                  +++++viv G  +
  CCD23112.1 551 MDNRGQVIVIGATN 564
                 33678888888665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00018      0.13      25      44 ..     452     471 ..     449     490 .. 0.88
   2 ?    1.2   0.0      0.28     2e+02      14      65 ..     757     807 ..     750     828 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
  Mg_chelatase  25 lllvGppGsGKtmlakrlps 44 
                   +l+ GppG+GKt++a++l++
    CCD23112.1 452 VLFHGPPGTGKTLMARALAA 471
                   799*************9976 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.28
  Mg_chelatase  14 aleiaaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvag 65 
                    +e a + +  l+++Gp+G G+  + +++ + l + + +  l+ a++ s ++
    CCD23112.1 757 QIEQARICKPRLIITGPSGNGQQYISAAILNYLDKYNVQ-KLDLASLFSETT 807
                   566677777889*************99998888776544.456665555554 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   7.1e-05     0.051       1      46 [.     452     493 ..     452     522 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.1e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdg 46 
                   ++++Gp+g+GK+++a+ La++ ++++   +k +++   +  d++++
    CCD23112.1 452 VLFHGPPGTGKTLMARALAASCSSDS---QKITFF-MRKGADILSK 493
                   689**************999998554...334444.4455555554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00027      0.19       1      33 [.     452     485 ..     452     559 .. 0.74
   2 ?   -2.4   0.1       9.3   6.7e+03      45      67 ..    1284    1306 ..    1243    1332 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00027
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.gvnlrdvak 33 
                 +l  G+pG+GKt +a++L+ ++ + ++++++  +
  CCD23112.1 452 VLFHGPPGTGKTLMARALAASCSSdSQKITFFMR 485
                 5778**************9998556444444433 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 9.3
      AAA_18   45 aldeskrldedkldklldaleen 67  
                  +++++ ++de  l++++d l++ 
  CCD23112.1 1284 KHPDNVIVDERLLESIVDSLQKK 1306
                  33444445555555555555554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   1.1      0.37   2.7e+02      36     104 ..      35     116 ..      30     198 .. 0.84
   2 ?   14.4   0.0   5.9e-05     0.042       6      83 ..     444     534 ..     442     565 .. 0.77
   3 ?   -1.9   0.3       6.2   4.5e+03      45      74 ..    1216    1244 ..    1169    1309 .. 0.54

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.37
                 --SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH............HHHTCHHHHHHHSTTGGTTCBGEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  36 kpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren............esdeeiekalsklglkelkdtvvks 104
                 ++++G ++   ++l++++  + +k + +l+q+ +++++++   +n            ++++e +++ ++ g++  k++++++
  CCD23112.1  35 TDANGIVHTSHRSLRRINYAEIEKGFDFLEQDeDEMQDDIPHPNNkdtlipiasnddDDNRERNEIDNSNGNSSNKKRKMNN 116
                 66899***************************88888888655557889998888775555566666666666655555544 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 5.9e-05
                 EEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET...TCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH.........HHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx.........xxxx RF
    ABC_tran   6 lklkegekvaivGenGaGKStLlkllagllkpteGeilld...gkdlkeqeleslrkeigvlpqe.pqlfpeltvren.........esde 83 
                 +++ + + v + G+ G+GK+ ++++la   + ++ +i++    g+d+ ++   +++++++ l++e ++++p +   ++          ++e
  CCD23112.1 444 FNITPPRGVLFHGPPGTGKTLMARALAASCSSDSQKITFFmrkGADILSKWVGEAERQLRLLFEEaKKHQPSIIFFDEidglapvrsSKQE 534
                 67777788999**************************876212566666999999*********988888888766667888777643333 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 6.2
                  TTCEGGGB-HHHCCHCEEEE-SS--S-TTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   45 dgkdlkeqeleslrkeigvlpqepqlfpel 74  
                  d+ ++++ +l + +ke +v+p  ++l +++
  CCD23112.1 1216 DNIPSQR-TLAKDEKETEVIPTAERLVKTS 1244
                  2222222.3333333333333333333332 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00043      0.31      22      47 ..     452     477 ..     444     500 .. 0.85
   2 ?    0.9   0.0      0.37   2.7e+02       8      51 ..     750     796 ..     745     801 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00043
                 EEEE--TTSSTTHHHHHHHHHHHHTT CS
        PhoH  22 vfaiGpaGtGKtylavalavealkkk 47 
                 v   Gp GtGKt++a ala++  +++
  CCD23112.1 452 VLFHGPPGTGKTLMARALAASCSSDS 477
                 5678***************9987664 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.37
                 HHHHHHHHHHH-SE....EEEE--TTSSTTHHHHHHHHHHHHTTS-SE CS
        PhoH   8 eQkeylealkkndi....vfaiGpaGtGKtylavalavealkkkkvkr 51 
                 + +++++++++  i    ++++Gp+G G  y++ a+ +++l k +v++
  CCD23112.1 750 NKHKLMKQIEQARIckprLIITGPSGNGQQYISAAI-LNYLDKYNVQK 796
                 566777777765542222689***********9765.56666666665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00011     0.079       2      22 ..     452     472 ..     452     565 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      AAA_33   2 vllvGlpGsGKstlaerllkk 22 
                 vl++G+pG+GK+  a+ l++ 
  CCD23112.1 452 VLFHGPPGTGKTLMARALAAS 472
                 79***************9865 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00014     0.099       2      46 ..     452     495 ..     451     548 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtev 46 
                 vl++g PG++ktl+++ala + + + ++i f      +dil + v
  CCD23112.1 452 VLFHGPPGTGKTLMARALAASCSSDSQKITFFMR-KGADILSKWV 495
                 7899*************************99643.3455555555 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0     0.001      0.75     117     138 ..     452     473 ..     439     475 .. 0.86
   2 ?    0.7   0.0      0.31   2.2e+02     117     143 ..     768     794 ..     751     810 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.001
   Parvo_NS1 117 vwfyGpantGktnlaeaIakav 138
                 v+f+Gp+ tGkt +a+a+a  +
  CCD23112.1 452 VLFHGPPGTGKTLMARALAASC 473
                 89****************9765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.31
   Parvo_NS1 117 vwfyGpantGktnlaeaIakavplygc 143
                 + ++Gp   G +++ +aI + +++y +
  CCD23112.1 768 LIITGPSGNGQQYISAAILNYLDKYNV 794
                 5689*****************999975 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00028       0.2      36      61 ..     452     477 ..     421     552 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00028
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvkl 61 
                 vl++GpPG Gkt +a+ +a+   ++ 
  CCD23112.1 452 VLFHGPPGTGKTLMARALAASCSSDS 477
                 9****************998876654 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00042       0.3      37      61 ..     453     477 ..     449     567 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00042
      AAA_25  37 llaGapgtGKttlaldlalavatGk 61 
                 l+ G+pgtGKt +a  la+++++++
  CCD23112.1 453 LFHGPPGTGKTLMARALAASCSSDS 477
                 789******************9554 PP

>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00021      0.15      37      71 ..    1040    1074 ..    1038    1089 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00021
                   --HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHH CS
  Bromodomain   37 ldLstIkkklesnkYksladfeadlkllfsNarky 71  
                   +dL  ++++l ++ Y+ +++  +d++l++  a ++
   CCD23112.1 1040 MDLDIVEERLWNGYYSEPKQYLKDIELIYRDANTM 1074
                   9****************************999876 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00071      0.51      20      41 ..     452     473 ..     442     510 .. 0.82
   2 ?   -3.2   0.0       8.2   5.9e+03      13      44 ..     761     792 ..     749     836 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00071
      AAA_11  20 tliqGPPGtgKTktivellsql 41 
                 +l++GPPGtgKT +  +l ++ 
  CCD23112.1 452 VLFHGPPGTGKTLMARALAASC 473
                 699*********9888887776 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.2
      AAA_11  13 alseseitliqGPPGtgKTktivellsqllsr 44 
                 a   +   +i GP G g     +++l++l ++
  CCD23112.1 761 ARICKPRLIITGPSGNGQQYISAAILNYLDKY 792
                 44444456777777777776666666666422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1432  (0.0798706); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 1.06u 0.29s 00:00:01.35 Elapsed: 00:00:00.45
# Mc/sec: 8958.76
//
Query:       CCD23113.1  [L=223]
Description: hypothetical protein NDAI_0B00790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00065   20.0  10.4      0.059   13.7   0.7    2.6  3  DnaJ_CXXCXGXG  DnaJ central domain
  ------ inclusion threshold ------
      0.063   13.1   1.1      0.093   12.6   1.1    1.2  1  TMEM51         Transmembrane protein 51
       0.23   11.6   8.3        0.5   10.5   8.3    1.5  1  SUIM_assoc     Unstructured region C-term to UIM in Ataxin3
       0.29   11.2   1.5        3.7    7.6   0.5    2.1  2  HypA           Hydrogenase/urease nickel incorporation, metal
          5    7.5   6.7        7.5    7.0   6.7    1.2  1  CCDC53         Subunit CCDC53 of WASH complex
        5.7    7.0  10.9        1.2    9.1   0.9    3.3  2  Anti-TRAP      Tryptophan RNA-binding attenuator protein inhi


Domain annotation for each model (and alignments):
>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.3         6   1.8e+04      37      39 ..      28      30 ..      19      35 .. 0.43
   2 !   13.7   0.7     2e-05     0.059      43      63 ..      97     117 ..      74     120 .. 0.85
   3 !   13.0   0.2   3.3e-05     0.098      17      54 ..     191     219 ..     182     222 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6
  DnaJ_CXXCXGXG 37 vqq 39
                   +qq
     CCD23113.1 28 QQQ 30
                   111 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2e-05
  DnaJ_CXXCXGXG  43 tCpeCeGtGkvikekdkCkkC 63 
                    +C++C+ tG  +k+ + Ck+C
     CCD23113.1  97 HCKKCNNTGYKLKNGHSCKSC 117
                    799999999999999999999 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 3.3e-05
  DnaJ_CXXCXGXG  17 CktCkGsGvvreeqktlgpfvqqsqstCpeCeGtGkvi 54 
                    C +C+GsG++        ++       Cp C+G G++i
     CCD23113.1 191 CGECRGSGRI-------RFLL--DDDLCPLCNGLGRII 219
                    6666666621.......1122..345566666666655 PP

>> TMEM51  Transmembrane protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.1   3.1e-05     0.093     149     197 ..       9      53 ..       2      61 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.1e-05
      TMEM51 149 sqLPsyedlvevdeneaeeeaeaeaaasaeepsaaaasrsnsrasrllk 197
                   LPsyed+++ +e  +++++++++++   +p+      sn+r+s  ++
  CCD23113.1   9 DGLPSYEDVINEEERLQQQQQQQQQNSRPRPPPI----PSNNRPSTSIR 53 
                 579********98888766666554444444444....46666665555 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   8.3   0.00017       0.5      30      58 ..      23      52 ..      19      56 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
  SUIM_assoc 30 qeqqqqqqqqqqdppgqlshp.rekpttSs 58
                  qqqqqqqqq+ +p   + p +++p+tS 
  CCD23113.1 23 RLQQQQQQQQQNSRPRPPPIPsNNRPSTSI 52
                3678888888888888877772579***96 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.5    0.0012       3.7      68      93 ..      93     118 ..      88     127 .. 0.79
   2 ?    2.2   0.0     0.058   1.7e+02      71      94 ..     189     214 ..     185     220 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0012
                 --EEEETTTS-EEECHHHHHS-TTTS CS
        HypA  68 pvkvrCreCgkefeleekalrCpkCg 93 
                 p+ ++C++C++++ + ++  +C++C 
  CCD23113.1  93 PAGFHCKKCNNTGYKLKNGHSCKSCW 118
                 78899****99988554556799995 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.058
                 EEETTTS-EEECHH..HHHS-TTTSS CS
        HypA  71 vrCreCgkefelee..kalrCpkCgs 94 
                 v C eC+ +++++   ++  Cp C++
  CCD23113.1 189 VICGECRGSGRIRFllDDDLCPLCNG 214
                 67999999888776543456****87 PP

>> CCDC53  Subunit CCDC53 of WASH complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   6.7    0.0025       7.5      49     109 ..      13      73 ..       8      88 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0025
      CCDC53  49 gleeveaeaaeastsddnaarkgppppppsseaaaaaaqaeeasqaeesaeeeaeeqeese 109
                 + e+v +e++  ++++++++++++p+ppp  ++++ +++  +++ ++++ ++ ++++++++
  CCD23113.1  13 SYEDVINEEERLQQQQQQQQQNSRPRPPPIPSNNRPSTSIRPPPLQPARPSPRPPASHPTQ 73 
                 5566666666777777788888888888888888877777777777777666666665543 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   3.3      0.19   5.7e+02      12      25 ..      97     110 ..      95     130 .. 0.78
   2 ?    9.1   0.9    0.0004       1.2      11      42 ..     189     218 ..     178     222 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.19
                 E-TTTTTTSEETTE CS
   Anti-TRAP  12 kCdaCngsGkiepe 25 
                 +C++Cn +G    +
  CCD23113.1  97 HCKKCNNTGYKLKN 110
                 69999999976555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0004
                 EE-TTTTTTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkgli 42 
                 + C +C gsG+i          CP C+G g i
  CCD23113.1 189 VICGECRGSGRIRFL--LDDDLCPLCNGLGRI 218
                 5699********988..33335*****99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1088  (0.0606838); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1680.32
//
Query:       CCD23114.1  [L=246]
Description: hypothetical protein NDAI_0B00800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-76  256.3   0.7    1.2e-76  256.1   0.7    1.0  1  GTP_cyclohydroI  GTP cyclohydrolase I
    1.2e-05   25.3   0.0    4.7e-05   23.5   0.0    1.9  2  QueF             QueF-like protein


Domain annotation for each model (and alignments):
>> GTP_cyclohydroI  GTP cyclohydrolase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.1   0.7   1.4e-80   1.2e-76       1     178 [.      63     241 ..      63     242 .. 0.97

  Alignments for each domain:
  == domain 1  score: 256.1 bits;  conditional E-value: 1.4e-80
                      HHHHHHHHHHHTT--TTSTTTTTHHHHHHHHHHHHTGGGGS-G.GGGG.SSEEETT--S-EEEEEEEEEEEETTT--EEEEEEEEEEE-TTEEE CS
  GTP_cyclohydroI   1 ieeavreiLealgedpereglketpkRvakayeelfkgleedpkekvl.kkvfeeekdemvlvkdiefsSlCeHHllpfigkahvaYiPkkkvi 93 
                      i++av+ iL+++ged++regl  tp+R+aka+  ++kg++++  ++v+ ++vfee++demv+v+die++SlCeHHl+pf+gk+h+aYiP+kkvi
       CCD23114.1  63 IADAVKVILNEVGEDINREGLLATPERYAKAMLFFTKGYQTNIMDDVInNAVFEEDHDEMVIVRDIEIHSLCEHHLVPFFGKVHIAYIPNKKVI 156
                      5789***************************************555553899****************************************** PP

                      -HHHHHHHHHHHHSSEE-HHHHHHHHHHHHHHHH--SEEEEEEEEEEHHHHSSTT--TT-EEEEEEEEEHHHH-HHHHHHHHHHH CS
  GTP_cyclohydroI  94 GlSklaRivdvvarrlqvQErlteqiadaleevlkpkgvavvieaehlCmtmrgvkkkesktvtsalrGefkedaalreefleli 178
                      GlSklaR+++++arrlqvQErlt+qia al+e+lkp gvavviea+h+Cm  rgv+k++s+t+ts++ G f++++++reefl+l+
       CCD23114.1 157 GLSKLARLAEMYARRLQVQERLTKQIALALSEILKPLGVAVVIEASHMCMVSRGVQKTGSSTMTSCMLGCFRDQHKTREEFLTLL 241
                      *********************************************************************************9986 PP

>> QueF  QueF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   5.3e-09   4.7e-05       1      59 [.     140     198 ..     140     203 .. 0.95
   2 ?   -2.2   0.0      0.54   4.9e+03      26      39 ..     224     237 ..     222     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 5.3e-09
        QueF   1 PDfatlvirYvpdkkvvelkslklYlisfrnrgifhEevvnrilddlvealkPkwlevv 59 
                 P f++++i Y+p+kkv+ l  l +    + +r + +E  +++i+  l e lkP  + vv
  CCD23114.1 140 PFFGKVHIAYIPNKKVIGLSKLARLAEMYARRLQVQERLTKQIALALSEILKPLGVAVV 198
                 669**************************************************988775 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.54
        QueF  26 lisfrnrgifhEev 39 
                 l  fr++++ +Ee 
  CCD23114.1 224 LGCFRDQHKTREEF 237
                 6789**99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1889.15
//
Query:       CCD23115.1  [L=708]
Description: hypothetical protein NDAI_0B00810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0072   15.4   0.0      0.044   12.8   0.0    2.3  1  PhoD      PhoD-like phosphatase


Domain annotation for each model (and alignments):
>> PhoD  PhoD-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.5e-06     0.044      18     175 ..     187     387 ..     161     533 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-06
        PhoD  18 relaeeedlDlvlhlGDyiYeygpgeyaseaaelgrevepp..............keivtladYReryaqyktdadlqa..........ahaaapfivv 92 
                 ++  +  ++ ++l  GD iY ++ + y  + ++  +++ p                + + l++Y e y   +   +  +          a++++p i +
  CCD23115.1 187 NKHSKF-RYHVMLGGGDQIYSDSINLYCPAVKKWLKTHDPIkrystkmtpeffeqLNQFYLKEYIEWYGFGHWKGSTPKsmttqncfpiATSTIPSINI 284
                 555554.56666666677776654444333222222222223444445555555444455555555554322222221122233455558999****** PP

        PhoD  93 wDDHEvaNnswsggaenhqeetegdfekrkaaAlqAyf...EwmPireak...................pgeeeri......yrsfeyGdladlflLDt 163
                 wDDH + +  + + ++     ++  f++  +aA++ y+   +++ i +++                   +                ++G+++ ++ LD 
  CCD23115.1 285 WDDHDIIDG-FGSYSDAFM--KTPVFSSIGKAAYKYYMlfqHHVSIDANDdddiaylktsnwilgkrpgQ-----YieekshSVFTRLGPTMGMLGLDC 375
                 ********9.766555555..7889999999999988633356677666435555555555555544331.....033333233347899999999999 PP

        PhoD 164 Rqyrrdqavsye 175
                 R+ r+ +++  e
  CCD23115.1 376 RTERKLKEIVSE 387
                 999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5108.77
//
Query:       CCD23116.1  [L=377]
Description: hypothetical protein NDAI_0B00820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-95  317.7   2.6      1e-94  317.5   2.6    1.0  1  Say1_Mug180    Steryl acetyl hydrolase
    2.7e-13   50.3   0.0    3.6e-13   49.9   0.0    1.2  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.5   2.6   1.1e-98     1e-94       3     374 .]       8     374 ..       6     374 .. 0.95

  Alignments for each domain:
  == domain 1  score: 317.5 bits;  conditional E-value: 1.1e-98
  Say1_Mug180   3 flvklltvlPiklvlrsikivvfpkrrlrldllsriflreslklldeaivkyvlnplldllsslllkfegssitkyklpkedekslegeifdkkllnq 100
                  f+vkl+t+lPi lv+  + i + ++r l+  +  r f+re + ++d++++ +++npl++l    l       + +y++ +e + s     f+   l+ 
   CCD23116.1   8 FIVKLFTLLPIRLVYCYLVILIRHRRSLKGSIWIRAFMREAFDMTDDHTCPDIINPLFNLCVNYLCDK--VETIQYQITDEHRLS-----FSAIGLRD 98 
                  89*********************************************************666666653..555588888777777.....9999**** PP

  Say1_Mug180 101 dkikskfvwlrkvpetfdPkvDpvllylHGGgfalklipvtlvfLsnlrklfpdmailvsDYtvtaakdqskkYplqvleslavydylvkskgfknvv 198
                  ++i+ ++ w++k p +f+   D +lly+HGGgfa+ l+p++l+fL nl   fp+mai++ DY+vt   ++ k+Yp q+les+ +y  l++ + +knv+
   CCD23116.1  99 EMIDVRYRWYYK-PDDFNASDDDILLYFHGGGFAVTLVPTSLIFLRNLSIWFPKMAIIMIDYSVTV-GENDKQYPYQILESIGLYTHLINNLQCKNVI 194
                  ************.****************************************************9.667799************************* PP

  Say1_Mug180 199 vlGdSaGGnlvLslllklskl....nkvvlPkkaiaiSPWlnltildekekeylkasdklDvlclkglelfgklyvnnrepeeelktdefvnieknfd 292
                  ++G+SaGGnl L ll +ls +     k  lPkk i+iSPW+n+  ld  ++ + k+ ++lD l+++gle f k y++  +p + +++ +fv++ ++fd
   CCD23116.1 195 LMGESAGGNLELALLNYLSTTtmmkTKIPLPKKTILISPWVNPSRLDRYDIMQEKEIERLDCLSFEGLEKFTKRYLQSMNPLNGVNSLPFVDLSYDFD 292
                  *****************7653111167789******************************************************************** PP

  Say1_Mug180 293 ievWseilekckllityGddEilkdqikllidkiselkeksysepknvlidkqGiHigPilkyssnldkWskllsvkeileF 374
                   + W+ ile++++ ityG+dEilk qi+ +i+ +  ++++++ ++++v + + G+Hi+P+lk +++l++Ws   sv+ il F
   CCD23116.1 293 SDNWKTILEQSSIYITYGKDEILKPQIQTFIKNLEMIHPNNFDTSRQVSAYEGGCHIEPLLKLDTDLNSWSMHASVNGILRF 374
                  *******************************************************************************998 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0     4e-17   3.6e-13       1     150 [.     122     276 ..     122     349 .. 0.77

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 4e-17
                    EEEE--STTTS--TTTTHHHHHHHHHHH.TSEEEEEE---T...TTS-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakel.gavvvsvdYrlA...PehpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalra 92 
                    l+yfHGGGf +  + t+  ++r+l+    +++++++dY       ++++P ++ +++  + +l ++     ++ ++++l+G+SaGGnl +a++  +
     CCD23116.1 122 LLYFHGGGFAVTLVPTSLIFLRNLSIWFpKMAIIMIDYSVTvgeNDKQYPYQILESIGLYTHLINN-----LQCKNVILMGESAGGNLELALLNYL 212
                    69***********************988368899*****985445789*****************9.....99********************888 PP

                    HHTT---.....EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSS.GGGG CS
  Abhydrolase_3  93 rdegepk.....vagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylp.eadr 150
                      +  +k     ++ ++li+P+++++r ++ +i +++e ++   l+ + l+ f++ yl+  + +
     CCD23116.1 213 STTTMMKtkiplPKKTILISPWVNPSRLDRYDIMQEKEIERLDCLSFEGLEKFTKRYLQsMNPL 276
                    887544467888***********9988888888777777888899************9633333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2653.29
//
Query:       CCD23117.1  [L=373]
Description: hypothetical protein NDAI_0B00830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-86  290.1   0.0    2.5e-86  289.9   0.0    1.0  1  Say1_Mug180    Steryl acetyl hydrolase
    1.3e-15   57.8   0.0    1.7e-15   57.4   0.0    1.2  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> Say1_Mug180  Steryl acetyl hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.9   0.0   2.8e-90   2.5e-86       1     374 []       6     370 ..       6     370 .. 0.94

  Alignments for each domain:
  == domain 1  score: 289.9 bits;  conditional E-value: 2.8e-90
  Say1_Mug180   1 LkflvklltvlPiklvlrsikivvfpkrrlrldllsriflreslklldeaivkyvlnplldllsslllkfegssit.kyklpkedekslegeifdkkl 97 
                  L f+v + t+lPi l++  + i ++ kr lr  + +r f+res+ l+ +    +v+npll+   +++    g++ t +y   +ed+   + e    + 
   CCD23117.1   6 LLFIVNICTILPIRLLYCYLVILIKYKRSLRGTICTRTFMRESFILTSDDAFAEVINPLLN---WCVSYLCGKPETlQYCTTTEDRLIFDKELGLTE- 99 
                  679*********************************************************9...777777788888788888888877555544333. PP

  Say1_Mug180  98 lnqdkikskfvwlrkvpetfdPkvDpvllylHGGgfalklipvtlvfLsnlrklfpdmailvsDYtvtaakdqskkYplqvleslavydylvkskgfk 195
                     ++i+ k+ w + +p  fdP+ D +l+y+HGGg+a+ + p tl fL nl k+fp++ai+++DY++t   ++skk+p q+le l +ydy+++++ + 
   CCD23117.1 100 -IDTIIDVKYRWFK-MPDGFDPRNDDILIYFHGGGYAVAMSPSTLTFLGNLSKKFPKLAIIMLDYSLTL-GPDSKKFPAQLLEGLGIYDYVINTLHCE 194
                  .3578999999976.5****************************************************9.99************************** PP

  Say1_Mug180 196 nvvvlGdSaGGnlvLslllklsklnkvvlPkkaiaiSPWlnltildekekeylkasdklDvlclkglelfgklyvnnrepeeelktdefvnieknfdi 293
                  nv+++G+S+GGnl L ll +l       lPkka++iSPW+n+  +d  +k + k+ + lD ++++g+  f++  ++    e   +  ++v+i + fd 
   CCD23117.1 195 NVILMGESSGGNLELALLNYLITNTTIPLPKKAVLISPWANPSKMDRYNKRQEKELEMLDCVTFDGSIDFKDRLLGP---ELRNECLPLVDILYHFDP 289
                  **********************988888*********************************************9998...7777889*********** PP

  Say1_Mug180 294 evWseilekckllityGddEilkdqikllidkiselkeksysepknvlidkqGiHigPilkyssnldkWskllsvkeileF 374
                  +vW +il+ c++ +tyG+dEil+ qi+ lidk ++ ++++++e  +v   + G+Hi+P+l  ++n+d+Ws+  +v+ il+F
   CCD23117.1 290 KVWYKILDVCSIYVTYGKDEILRPQIEHLIDKFADTHPDKFNEITDVSGYEGGCHIEPLLVSDKNMDSWSQHGAVSGILQF 370
                  ******************************************************************************998 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.0   1.9e-19   1.7e-15       1     192 [.     125     324 ..     125     345 .. 0.76

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 1.9e-19
                    EEEE--STTTS--TTTTHHHHHHHHHHH.TSEEEEEE---T..TT.S-TTHHHHHHHHHHHHHHHTHHHHTETTCEEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_3   1 lvyfHGGGfvlgsldthdalcrelakel.gavvvsvdYrlA..Pe.hpfPaavedalaalrwlaeqawelgadpsrivlaGdSaGGnlaaavalra 92 
                    l+yfHGGG+ +  + +  +++ +l+k+  + ++++ dY l   P+ ++fPa++ ++l ++ ++ ++     ++ ++++l+G+S GGnl +a++  +
     CCD23117.1 125 LIYFHGGGYAVAMSPSTLTFLGNLSKKFpKLAIIMLDYSLTlgPDsKKFPAQLLEGLGIYDYVINT-----LHCENVILMGESSGGNLELALLNYL 215
                    69************************9935789999**8744486368*****************9.....8999******************888 PP

                    HHTT.---EEEEEEESE-SSTSSTTSHHHHHCHHTTTSSSSCHHHHHHHHHHHSS.GGGGG.STTTSGGGC..S-....SST---EEEEEETT-TT CS
  Abhydrolase_3  93 rdeg.epkvagqvliyPvtdlertesesikkaeeladgplltraaldlfwrlylp.eadrd.dplasplla..ed....lsglpptlvvvaefDpl 179
                      +   p ++  vli+P+ ++++ ++ + ++++el+    +t +    f +  l+ e   +  pl+  l++  ++    + +++ ++v  ++ ++l
     CCD23117.1 216 ITNTtIPLPKKAVLISPWANPSKMDRYNKRQEKELEMLDCVTFDGSIDFKDRLLGpELRNEcLPLVDILYHfdPKvwykILDVCSIYVTYGKDEIL 311
                    77763566*********9977444333333333343333456666666777777524333346799988886323777766799999999999999 PP

                    HHHHHHHHHHHHH CS
  Abhydrolase_3 180 rdegeayaerlra 192
                    r + e++ +++++
     CCD23117.1 312 RPQIEHLIDKFAD 324
                    9999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2675.28
//
Query:       CCD23118.1  [L=265]
Description: hypothetical protein NDAI_0B00840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-07   28.8   0.0    1.3e-06   27.9   0.0    1.4  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0001   22.0   0.0    0.00016   21.3   0.0    1.2  1  RIO1         RIO1 family
    0.00054   19.4   0.0    0.00072   19.0   0.0    1.3  1  Pkinase      Protein kinase domain
  ------ inclusion threshold ------
       0.01   15.1   0.0      0.016   14.5   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
       0.16   10.8   0.1       0.21   10.4   0.1    1.3  1  DUF1679      Protein of unknown function (DUF1679)
        0.2   10.9   0.6       0.74    9.1   0.1    2.0  2  EcKinase     Ecdysteroid kinase


Domain annotation for each model (and alignments):
>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   4.3e-10   1.3e-06      52     197 ..      68     217 ..      42     229 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 4.3e-10
         Kdo  52 klgrtravrEfrllkrLee.agvavpkpvaagavkvgle.yrAlllterle...gaqdLedllakwae.laeelkrallkavgrliaklhragvnHadl 144
                 +l + r   E r+l +L++  g++vpk +a     +++  +    l e+l    g+++L+++l   a+ + +   + +l +vg+ i  lh  + +H+dl
  CCD23118.1  68 SLTKHRTLSESRILSKLYQiDGIKVPKLIACD--PYNGCiWL-EFLGEDLPngfGFSNLKNFLWMNAKdPYNDCVKDTLYKVGQQIGLLHWNDYCHGDL 163
                 48889999********998459*****99754..44555165.5679999733359*****99988778778888888999****************** PP

         Kdo 145 yaknillqqee..eeeaeiwliDldkarlrlradrwrekdLarLkrsflkielte 197
                    ni l ++e  + +    liD+  + + +    ++  dL  L+r + + + + 
  CCD23118.1 164 TSSNIVLVKDEdyGTNWIPHLIDFGLGSTSS-LVEDKGVDLYVLERAIISTHSSF 217
                 *****9888874555666679***9999988.77788889999999877554444 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   5.3e-08   0.00016      29     143 ..      49     174 ..      31     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.3e-08
                 HHCTTTSTTSTCG--GS-HHHHHHHHHHHHHHHHHHHHHTT.--S--EEEEE..TTEEEEE--EE...TTEEGGBHHHCG.-..HHHHHHHHHHHHH.. CS
        RIO1  29 kkyvsgekrfkdrksktnprklvklwaekEfrnLkrleeag.vpvPkpielk..rhvlvmefige...dgvaapklkdve.e..eeeaeelyeevle.. 116
                 k  +++ +  k+ ++    ++l+k  +  E r+L++l++++ ++vPk i++   + ++ +ef+ge   +g+   +lk+   +  ++  +++++++l   
  CCD23118.1  49 KFIIKYRPT-KKYRHPLIDKSLTKHRTLSESRILSKLYQIDgIKVPKLIACDpyNGCIWLEFLGEdlpNGFGFSNLKNFLwMnaKDPYNDCVKDTLYkv 146
                 444555555.445567778899999999***********977*****999864489********62336999999999985445444444444444446 PP

                 .HHHHHHHTSTEEESS-STTSEEEETTE CS
        RIO1 117 .emrklykeaglvHaDLSeyNvlvdedk 143
                  +++ l++ + + H+DL   N+++ +d+
  CCD23118.1 147 gQQIGLLHWNDYCHGDLTSSNIVLVKDE 174
                 667788999999*********9998875 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.4e-07   0.00072      43     147 ..      72     192 ..      41     214 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEB........HHHHHH.HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEE CS
     Pkinase  43 kkvlrEikilkklk.hpnivrlyevfeekdelylvleyvegge........ladlle.rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLi 131
                 +++l+E +il kl   + i   + +  ++ + ++ le++ ++         l+++l  + +   ++ +k+ ++++ + +  lH +  +H Dl ++Ni +
  CCD23118.1  72 HRTLSESRILSKLYqIDGIKVPKLIACDPYNGCIWLEFLGEDLpngfgfsnLKNFLWmNAKDPYNDCVKDTLYKVGQQIGLLHWNDYCHGDLTSSNIVL 170
                 5556666666666533333333333344555666666666555555554444444443333345567899***************************** PP

                 ETTTE......EEE-SGTTSEE CS
     Pkinase 132 dekge......lKitDFGlake 147
                  ++++        ++DFGl + 
  CCD23118.1 171 VKDEDygtnwiPHLIDFGLGST 192
                 *8888899**99******9765 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   5.4e-06     0.016       7     151 ..      22     191 ..      19     204 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.4e-06
                  EEEESSEEEEEEEEET....TTTSSEEEEEEEEE.STTSSHHH......HHHHHHHHHHHHTS.-BTTB--EEEEEE.SSSSEEEEEE--....TTE. CS
  Pkinase_Tyr   7 lGeGafGkVvegtlkg....ekekkevkVavKtl.keeateee......keelleeakimkkl.khpnivkllgvct.keepllivteyv....kgG. 86 
                  + +Ga + V+  t++     ++++k++k ++K   ++++++        k++ l+e +i++kl +    +k+  ++  +  + +i +e++    ++G 
   CCD23118.1  22 ISQGAEAVVFTTTIHPyipsSNNEKKEKFIIKYRpTKKYRHPLidksltKHRTLSESRILSKLyQ-IDGIKVPKLIAcDPYNGCIWLEFLgedlPNGf 118
                  66788888888888888887778888888888773233322211112236778888888888843.33333333333233445666666511114557 PP

                  ...BHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE......TTEEEE-STTTHE CS
  Pkinase_Tyr  87 ...dLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse......nkvvkisDfGLar 151
                     +L++fL  +  +    + + +  ++v + +  L+ +++ H dl++ N++l +      n +  + DfGL +
   CCD23118.1 119 gfsNLKNFLWMN-AKDPYNDCVKDTLYKVGQQIGLLHWNDYCHGDLTSSNIVLVKdedygtNWIPHLIDFGLGS 191
                  7779*******9.6666666777899************************987765777756677888999865 PP

>> DUF1679  Protein of unknown function (DUF1679)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   7.1e-05      0.21     256     306 ..     142     195 ..     127     254 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.1e-05
     DUF1679 256 kaskvskvlGi..kkvlvhgDlwsaNiLfseeee.gklklkkviDyQlvslgnp 306
                 ++ kv + +G+   +  +hgDl s+Ni+  ++e+ g   +  +iD+ l s+++ 
  CCD23118.1 142 TLYKVGQQIGLlhWNDYCHGDLTSSNIVLVKDEDyGTNWIPHLIDFGLGSTSSL 195
                 56678888887656789*********976665542888999*****88776654 PP

>> EcKinase  Ecdysteroid kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.21   6.1e+02      10      40 ..      31      61 ..      27      70 .. 0.70
   2 ?    9.1   0.1   0.00025      0.74     217     256 ..     158     198 ..     138     234 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.21
    EcKinase 10 lrvtlevelkkdkskkekslivKtmpeeeek 40
                + +t++     ++++k++++i+K  p+++ +
  CCD23118.1 31 FTTTIHPYIPSSNNEKKEKFIIKYRPTKKYR 61
                55555554556899999*******9966554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00025
    EcKinase 217 lnHGDlwvnNimfkydeeg.epedvilvDFQlsrygSpalD 256
                  +HGDl ++Ni +  de+  +     l+DF l   +S++ D
  CCD23118.1 158 YCHGDLTSSNIVLVKDEDYgTNWIPHLIDFGLGSTSSLVED 198
                 59********9887777764666668***********9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1882.05
//
Query:       CCD23119.1  [L=844]
Description: hypothetical protein NDAI_0B00850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-99  333.8   8.3      2e-99  333.6   8.3    1.1  1  Adaptin_N       Adaptin N terminal region
    3.5e-11   43.4   8.0    8.5e-11   42.2   0.0    4.2  5  Cnd1            non-SMC mitotic condensation complex subunit 
    6.6e-08   32.8   0.1    1.1e-06   28.9   0.0    2.9  2  HEAT_2          HEAT repeats
      2e-06   27.5   0.5      0.041   14.1   0.0    4.5  4  HEAT            HEAT repeat
     0.0006   20.3   0.0       0.52   10.9   0.0    3.9  4  HEAT_EZ         HEAT-like repeat
  ------ inclusion threshold ------
      0.015   15.8   1.1       0.96   10.1   0.0    3.8  4  Vac14_Fab1_bd   Vacuolar 14 Fab1-binding region
      0.025   14.6   0.1       0.23   11.4   0.0    2.6  2  UNC45-central   Myosin-binding striated muscle assembly centr
      0.046   13.3   0.6         14    5.2   0.0    3.2  3  CLASP_N         CLASP N terminal
        1.1    9.2  11.9        1.8    8.5  11.9    1.2  1  TFIIA           Transcription factor IIA, alpha/beta subunit
        6.4    7.0  13.2         14    5.9  13.2    1.5  1  Na_trans_assoc  Sodium ion transport-associated
        6.4    6.6  12.5         14    5.5  12.5    1.6  1  Sigma70_ner     Sigma-70, non-essential region
        9.2    5.9  15.9         16    5.1  15.9    1.4  1  Cwf_Cwc_15      Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.6   8.3  1.3e-102     2e-99       2     523 ..      40     624 ..      39     625 .. 0.92

  Alignments for each domain:
  == domain 1  score: 333.6 bits;  conditional E-value: 1.3e-102
                 HHHCCHHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT-...--GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHH CS
   Adaptin_N   2 ekriqqelaeilnsnkdddekkkeavkkliylialGe...dvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirg 97 
                 +k+  ++l+++lns+  + +  k+a+k++i l+a+++   d+s +f++vvk+++s+d+++Krl+ +yl ++ae++++l+lL++nslqk  +d n+ +r+
  CCD23119.1  40 KKITPKQLRTMLNSR--NTRDLKDAMKRIISLMASDDtstDLSSYFADVVKNITSNDIKIKRLICIYLLRFAEREPNLTLLSVNSLQKTISDTNPEVRC 136
                 68889**********..******************99888899******************************************************** PP

                 HHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC..HHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHHH CS
   Adaptin_N  98 lALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkq..lveeikellsdkdpgvvlaAvalleeikkndrlllkllpklv 194
                 +A+r+Ls+++ ++l + ++ ++k+ ++d+s+ vr + a a+lkl+k+d++  +      + +k+ll+d dp+v++ Av ll+e+  + +l  +ll+ ++
  CCD23119.1 137 FAIRSLSDMKIASLNPMILYTLKTSVTDPSALVRYEVAFALLKLFKNDEEEGEFReeISNLLKDLLADADPRVISGAVILLKEC-FPSNL--ELLHGHF 232
                 ***********************************************9987542223778888888******************.88888..******* PP

                 CCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH......................................HHHHHHHCGGCGCSSCHHHHHHHHHCCH CS
   Adaptin_N 195 rrLcnllteldpwlqvkiiklltrlarqepeer..................................sk..kellesllnllqssnnaVlletvnlive 257
                 rr+c++l+e d+w+q  +i+ll ++++q+ +++                                  +   +++l++l++l++s n+ V+l+++n++++
  CCD23119.1 233 RRYCRVLKEIDSWAQGPLIDLLAKYCKQYLPRPmiidcsseedgsakqiplpdncseipfmaynvsyDPdlSLFLDNLKTLIYSPNPIVILACCNAYFQ 331
                 *******************************************************99999998876511569*************************** PP

                 CCCCST.HHHCCHHCHHHHHH.SSCCTCHHHHHCHHHHHHHHXXTTTTTTTCCCCSXX..TTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHT...T CS
   Adaptin_N 258 lapkne.livlavnaLvrlls.skdenlryvaLrtllkivkkepkavqhldlkifllk..tdddvsirlkaldlllklvdesNvkeivkeLkkyv...k 349
                 l+  +  +++++  aLvr    s++ +l+   L+++  ++  e +++++ +l  f+l+  ++ ++ i++++l +l++lv+++Nvk ivkeL+ y+   +
  CCD23119.1 332 LSVPSHmINSKFPDALVRSYLcSSNAGLKDTILQSIIYLSALE-PTLFQSHLTQFFLSpiNNNNIGISSLKLRILSNLVNATNVKGIVKELQHYIisfN 429
                 9988887889*******9766699999****************.999999999888853379999******************************4432 PP

                 SSXXHH.....HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTT....XXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG...XXSHHHHHHHH CS
   Adaptin_N 350 evaded.....fksklvkaIgrlaekfatdaewvldvllellsl....sgesvkdeivevirdliqkvpelheeiiekLaellek...ieseearaaai 436
                      +     + ++  +a++++++ +++ ++ ++++++el+++       sv d iv+ ir+l+q+ p  h  +i kL ++l++       +ara++i
  CCD23119.1 430 -----SkkyskIIIESSNALAKCGQLSTKLETYIMNWFIELMEDectnLKPSVLDVIVNIIRQLVQNEPRRHLAVILKLSNVLNTqktALADNARAGII 523
                 .....3344458888889*************************9443333667999*****************************655556779***** PP

                 HHHHHTTTTXTT...HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THX...............HHHHHHHHHHH.XXSHHHHHHHHHHHHH CS
   Adaptin_N 437 WllGeygelvsntesasdllrslaekfvlesekvklqiltalvKlyltspdketqe...............kliqlvlslat.ssdlevrdRaveylql 519
                 Wl+Ge++    +  +++dllr l+ +fv+e ++ + qil  ++Kl   + dk +++               ++++ vl +++ +++++vrdRa+++++l
  CCD23119.1 524 WLFGEIAGICFD--ICPDLLRQLIPNFVDEGVESRGQILLFAAKLLSYDIDKFKEShgleveydfknsrisQMFNAVLFFCKvDDEFDVRDRARCFESL 620
                 ************..********************************8887777777888888888888888************99************** PP

                 HCCX CS
   Adaptin_N 520 lssa 523
                 ++s+
  CCD23119.1 621 FNSK 624
                 9986 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.029        43       4      38 ..      99     135 ..      96     138 .. 0.78
   2 !   42.2   0.0   5.7e-14   8.5e-11       2     129 ..     134     260 ..     133     262 .. 0.86
   3 ?   -1.8   0.0       1.9   2.8e+03      59     102 ..     306     348 ..     303     371 .. 0.76
   4 ?   -0.1   0.9      0.55   8.3e+02      97     122 ..     401     428 ..     380     501 .. 0.43
   5 ?    1.6   0.2      0.17   2.6e+02      18      86 ..     457     526 ..     440     573 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.029
        Cnd1   4 alairtlg..cirvpnlveylvepLrkrLkDedpyVR 38 
                  l+ + l   + r pnl+   v+ L+k+++D++p VR
  CCD23119.1  99 RLICIYLLrfAEREPNLTLLSVNSLQKTISDTNPEVR 135
                 555555555677889999999999************9 PP

  == domain 2  score: 42.2 bits;  conditional E-value: 5.7e-14
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilnd..mvkekg.flselaklleDenprVvanalaalteiseksenaiynll 97 
                 +R+ air+l+ +++ +l   ++  L+++++D+++ VR   a++++kL++nd    + ++ + + l++ll D +prV++ a+++l+e+   +    ++ll
  CCD23119.1 134 VRCFAIRSLSDMKIASLNPMILYTLKTSVTDPSALVRYEVAFALLKLFKNDeeEGEFREeISNLLKDLLADADPRVISGAVILLKECFPSN----LELL 228
                 9**********************************************8888223445553666677899*********************9....5555 PP

        Cnd1  98 pdiisklsdalnecsewgqitilefLlsyipk 129
                 +  + ++   l+e++ w+q   +++L++y ++
  CCD23119.1 229 HGHFRRYCRVLKEIDSWAQGPLIDLLAKYCKQ 260
                 666666666666****************9875 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.9
        Cnd1  59 flselaklleDenprVvanalaalteiseksenaiynllpdiis 102
                 fl++l++l+  +np V+  + +a  ++s  s  +i + +pd + 
  CCD23119.1 306 FLDNLKTLIYSPNPIVILACCNAYFQLSVPS-HMINSKFPDALV 348
                 7899999999999999999999888888887.666666676654 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.55
        Cnd1  97 lpdiisklsdalne..csewgqitilef 122
                 +  i+s+l++a n   + ++ q++i++f
  CCD23119.1 401 KLRILSNLVNATNVkgIVKELQHYIISF 428
                 4444444444222222222223332222 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.17
        Cnd1  18 lveyl.vepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteis 86 
                  + ++ +e ++  ++  +p V    + ++ +L++n+  +   ++ +l + l+ +++   +na+a +  + 
  CCD23119.1 457 YIMNWfIELMEDECTNLKPSVLDVIVNIIRQLVQNEPRRHLAVILKLSNVLNTQKTALADNARAGIIWLF 526
                 4433314455667777778888888888888888888888888888888888888888888887655555 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   7.6e-10   1.1e-06       3      85 ..     122     215 ..      88     218 .. 0.81
   2 ?   -0.0   0.0      0.78   1.2e+03      26      51 ..     452     477 ..     440     504 .. 0.69

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 7.6e-10
      HEAT_2   3 aLlqalendpdpevrraairaLgrig....npealpaLvellededpavRraaaeaLgai.......g..dpealpaLkellddddddvvReaAae 85 
                  L + + +d +pevr  air+L +++    np +l +L   ++d+++ vR+++a aL ++       g  ++e  ++Lk+ll+d d +v+  a ++
  CCD23119.1 122 SLQKTI-SDTNPEVRCFAIRSLSDMKiaslNPMILYTLKTSVTDPSALVRYEVAFALLKLfkndeeeGefREEISNLLKDLLADADPRVISGA-VI 215
                 556667.9***************65522336788***********************887765544433347789999999987777766554.44 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.78
      HEAT_2  26 rignpealpaLvellededpavRraa 51 
                 ++ ++ ++++++el+ede ++    +
  CCD23119.1 452 TKLETYIMNWFIELMEDECTNLKPSV 477
                 33445679999999999987765555 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.7e-05     0.041       3      26 ..     121     144 ..     120     145 .. 0.90
   2 !    7.3   0.0    0.0043       6.4       2      29 ..     155     182 ..     154     183 .. 0.83
   3 ?   -0.6   0.0       1.6   2.3e+03       4      24 ..     197     217 ..     194     221 .. 0.77
   4 ?   -2.0   0.0       4.3   6.5e+03       2      23 ..     307     328 ..     306     328 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-05
                 HHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLga 26 
                 + l+k +sD++peVR+ A+++L +
  CCD23119.1 121 NSLQKTISDTNPEVRCFAIRSLSD 144
                 679999***************987 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0043
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalae 29 
                 l +l +  +Dps+ VR+ +a aL +l +
  CCD23119.1 155 LYTLKTSVTDPSALVRYEVAFALLKLFK 182
                 556777789**************88866 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.6
                 HHHHHHT-SSHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaL 24 
                 ll  ll D +p+V + A+  L
  CCD23119.1 197 LLKDLLADADPRVISGAVILL 217
                 677889******977776665 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 4.3
                 HHHHHHHHT-SSHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAaka 23 
                 l+ l +l+ +p+p V  a+++a
  CCD23119.1 307 LDNLKTLIYSPNPIVILACCNA 328
                 5666777789999999999976 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.8   5.7e+03      18      42 ..      55      74 ..      49      77 .. 0.69
   2 ?    3.7   0.0     0.063        93      33      53 ..     123     143 ..     119     145 .. 0.88
   3 ?   -0.7   0.0       1.5   2.2e+03      38      52 ..     163     177 ..     154     177 .. 0.87
   4 !   10.9   0.0   0.00035      0.52       4      40 ..     519     550 ..     516     558 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.8
     HEAT_EZ 18 epellqplvpeilpaLlalLnddsd 42
                + ++l+++ ++i+ +++     ++d
  CCD23119.1 55 NTRDLKDAMKRIISLMA-----SDD 74
                66788877777777777.....555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.063
     HEAT_EZ  33 LlalLnddsdeVRaaAagaLg 53 
                 L ++ +d ++eVR+ A++ L+
  CCD23119.1 123 LQKTISDTNPEVRCFAIRSLS 143
                 788999************998 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.5
     HEAT_EZ  38 nddsdeVRaaAagaL 52 
                 +d+s++VR+ +a aL
  CCD23119.1 163 TDPSALVRYEVAFAL 177
                 79999*****99998 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00035
     HEAT_EZ   4 RraAawaLGrlaggepellqplvpeilpaLlalLndd 40 
                 R++ +w +G++ag +++ +++l+ +++p ++     d
  CCD23119.1 519 RAGIIWLFGEIAGICFDICPDLLRQLIPNFV-----D 550
                 8999**************************9.....6 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.47     7e+02      30      51 ..     121     142 ..     114     149 .. 0.83
   2 ?   10.1   0.0   0.00064      0.96      22      91 ..     148     216 ..     136     220 .. 0.84
   3 ?   -3.1   0.0       8.4   1.3e+04      31      54 ..     461     484 ..     446     509 .. 0.58
   4 ?   -0.4   0.0       1.2   1.7e+03      26      57 ..     592     626 ..     578     635 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.47
  Vac14_Fab1_bd  30 kpvlkcfsDkdsrvRyyacEsl 51 
                    +++ k++sD++ +vR +a+ sl
     CCD23119.1 121 NSLQKTISDTNPEVRCFAIRSL 142
                    56678899**********9998 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00064
  Vac14_Fab1_bd  22 keyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksgaell 91 
                    ++    i+ ++ ++++D ++ vRy ++ +l  + k  ++e  ++ +ei + l  l+aD+d+ v sga +l
     CCD23119.1 148 ASLNPMILYTLKTSVTDPSALVRYEVAFALLKLFKNDEEEG-EFREEISNLLKDLLADADPRVISGAVIL 216
                    555566777778899**********9999999999877664.78899*******************9887 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 8.4
  Vac14_Fab1_bd  31 pvlkcfsDkdsrvRyyacEslyni 54 
                      ++ ++D+ + ++  + + + ni
     CCD23119.1 461 WFIELMEDECTNLKPSVLDVIVNI 484
                    444444444444443333333343 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 1.2
  Vac14_Fab1_bd  26 eeivkpvlk.cfsDkdsrvR..yyacEslyniakv 57 
                    +++ + vl  c  D++  vR      Esl+n  k 
     CCD23119.1 592 SQMFNAVLFfCKVDDEFDVRdrARCFESLFNSKKF 626
                    45555555413345554454104557999998775 PP

>> UNC45-central  Myosin-binding striated muscle assembly central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.2   1.9e+03      31      64 ..      37      70 ..       8      97 .. 0.64
   2 ?   11.4   0.0   0.00015      0.23      14      74 ..     165     227 ..     149     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.2
                   HHHHHHHHHHHHHHHHHHHSCCTHHHHHHHHHHH CS
  UNC45-central 31 daakeefeeaiseflesllekgdeddllnalsvl 64
                   + +k+ + ++++++l+s+ ++  +d +++++s++
     CCD23119.1 37 QYSKKITPKQLRTMLNSRNTRDLKDAMKRIISLM 70
                   5566666666666666666555555555555554 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00015
                    --TTHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHHHHHSSHHH CS
  UNC45-central  14 qpesvrslallilskll..daakeefeeaiseflesllekgdeddllnalsvltalFpvvpdv 74 
                     ++ vr  +  +l kl+  d+++ ef+e is+ l++ll++ d   +  a+ +l ++Fp   ++
     CCD23119.1 165 PSALVRYEVAFALLKLFknDEEEGEFREEISNLLKDLLADADPRVISGAVILLKECFPSNLEL 227
                    567889999999999997777888899*******************************87665 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.019        28     152     193 ..     103     135 ..      91     143 .. 0.72
   2 ?    5.2   0.0    0.0092        14     127     194 ..     150     211 ..     138     228 .. 0.76
   3 ?   -1.2   0.2      0.82   1.2e+03      41      99 ..     411     465 ..     396     505 .. 0.63

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.019
     CLASP_N 152 iwLkilltrfeshkskleasllldliekslkkgleDanptVR 193
                 i+L  + +r +        +l l l ++sl+k ++D np+VR
  CCD23119.1 103 IYLLRFAEREP--------NLTL-LSVNSLQKTISDTNPEVR 135
                 44444445444........3333.6899************** PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0092
     CLASP_N 127 fsprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRe 194
                 ++p il  l + ++d ++  R  +a  L  l+++ e      e+ +  ++i ++lk +l+Da+p V +
  CCD23119.1 150 LNPMILYTLKTSVTDPSALVRYEVAFALLKLFKNDE------EEGEFREEISNLLKDLLADADPRVIS 211
                 456667777777777777777777777777777777......78887899**************9955 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.82
     CLASP_N  41 edaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptL 99 
                   +v+ +++ l+   + i++  s+ ++ ++ ++   l ++  ql ++l+ ++ + +  L
  CCD23119.1 411 ATNVKGIVKELQ---HYIISFNSKKYSKIIIESSNALAKCG-QLSTKLETYIMNWFIEL 465
                 444444444444...88888888888877777777777763.55566665533333333 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  11.9    0.0012       1.8     263     370 ..     684     831 ..     634     839 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0012
       TFIIA 263 aeeeagaqkeelsreeidrireealkakelekeskkkkr.aee.ssla..........dlseilqlDGagddsde........................ 325
                 + ++ +a   e +re+i++   +  k+ ++ k+s ++++  ++ ss++           ++ i qlD +++ sd                         
  CCD23119.1 684 EDNNTAA---EEGREDIRSE--SPVKDYSRYKKSFSSSSfISKsSSSSrafassnihgITNGIDQLDLKKEGSDTitlntvpfnkkyklqsldeffqdi 777
                 3332222...2334444433..334444444444433343333222225666666777889999****9999999************************ PP

       TFIIA 326 ...............eeeeeesdedsdsessddedeqveEDplNSdDDvddeddddlfdt 370
                                eeeeee++ ++d      ++e+++E    SdD vdd+d dd++  
  CCD23119.1 778 pekpkprlkkkiiiqEEEEEEEEAEED------DEEDSDESGTSSDDGVDDDDTDDTESS 831
                 *******99988885332222222222......122245666667777776666665433 PP

>> Na_trans_assoc  Sodium ion transport-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  13.2    0.0091        14      83     146 ..     770     839 ..     681     843 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0091
  Na_trans_assoc  83 eddeld...fiknpnltvsVpIAegesdle.neededessesseeekkk..eeeqlekdessssegstvD 146
                      d+  +    + +p l+ ++ I e+e++ e  eed++e+s++s++ +++  ++++++++esss e+s +D
      CCD23119.1 770 LDEFFQdipEKPKPRLKKKIIIQEEEEEEEeAEEDDEEDSDESGTSSDDgvDDDDTDDTESSSDEDSSID 839
                     2222233334455888888889888877773577888888888777777544666789999999***999 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  12.5    0.0096        14      31      71 ..     788     841 ..     742     843 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0096
  Sigma70_ner  31 D....eeeeeeeeeeeedeeeeeee.........eddd.eeeseseaadeeelke 71 
                       e eeeeeee+eed+ee+++e         +ddd +++++s+++d+++++e
   CCD23119.1 788 KiiiqE-EEEEEEEAEEDDEEDSDEsgtssddgvDDDDtDDTESSSDEDSSIDEE 841
                  044432.333333333333333333467766777555567788888888888876 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  15.9     0.011        16      99     153 ..     784     842 ..     683     843 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.011
                 -----.----..-----------------.-----..---------------------- CS
  Cwf_Cwc_15  99 rrkee.lleeareidaddedseeeeeeee.eesdd..dsdsdsdddddedetaeLlrEL 153
                 r k++ +++e++e +++ e+++ee+++e+ ++sdd  d+d+ +d +++ de+  +  EL
  CCD23119.1 784 RLKKKiIIQEEEEEEEEAEEDDEEDSDESgTSSDDgvDDDDTDDTESSSDEDSSIDEEL 842
                 22223255554333333333332223322344444455555555556666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1447  (0.0807072); expected 358.6 (0.02)
Passed bias filter:                      756  (0.0421663); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.92u 0.33s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 5235.79
//
Query:       CCD23120.1  [L=555]
Description: hypothetical protein NDAI_0B00860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-30  105.6  28.1    2.7e-30  105.5  27.5    1.3  2  MFS_1          Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.25   11.1   1.1       0.46   10.2   0.1    1.8  2  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5  27.5     3e-34   2.7e-30       3     352 ..     119     480 ..     117     481 .. 0.89
   2 ?   -4.1   0.0      0.63   5.6e+03     159     179 ..     504     524 ..     500     527 .. 0.61

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 3e-34
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgaga 101
                 +++fls l+ s++g a    l++d g+ +++++  +t+++ +++++ +++  l   +G+  ++ l+ll+f++ +l+ +++ +++ l+v+r+l G+++g+
  CCD23120.1 119 MLYFLSNLDKSNIGNAEVAGLSKDIGLVGTQYNVCVTVFFGTYVIFDPIGTNLLKIMGPPTMMSLCLLCFGVISLCTAWVKNYPQLIVVRLLLGAFEGM 217
                 689**************99******************************************************88888889999*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrkspkeee........ 188
                 ++pa++ +++  + +e+ ++ ++++ a++ l++ +g l++  +++  g    W++++++ +++s+ ++  f+++ + ++ e +++ +kee+        
  CCD23120.1 218 IYPAINMYLSVCYRREQYALRFAFIFAAACLSSSFGGLIAYGCSTINGslssWQYIYIVEGAISIGFVP-FYVFGLSKHLEDSWFFTKEESqyivdryk 315
                 *****************************************99988888999**************855.66777777777777767777779999999 PP

       MFS_1 189 .....kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlgls...glllaglllallalvgailallagrlsdrlgrrrrlll 279
                        ++++ +++  k+  kd   wi  +al+++ + ++gl+++lp++  + +g++   +     l+   +++++a++++ ++ +sd+l  r + ++
  CCD23120.1 316 tmntfDPDEKFDWFQ-VKLAIKDIKTWISAVALFGIDLTTFGLTVFLPII-ITSMGFTnvrA----QLMTVPIYFLTAFVFFGCAVWSDHLRLRSPFII 408
                 99999999*******.********9**9*********************7.*******5542....334445555555556778888888888788888 PP

       MFS_1 280 allllllaalglallavtssavllllvlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 +  +++++ ++++l +  +    + + ++++G+   + +++++l+  + ++   +++ta+g++ ++gs +g+++
  CCD23120.1 409 GACITTATGISIVLGSQVHGVRYFGVYILCMGIyVNAACNCLWLSGNNGNY--FKRATALGINLFLGSGSGLVS 480
                 888888888888888888777777778888*********************..**************9998875 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 0.63
       MFS_1 159 ivsllafvlfllllpeepper 179
                 i+s+++ v+ +ll+++e++++
  CCD23120.1 504 ILSIIMTVIQFLLYRRENKRK 524
                 566777775556666666554 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   5.2e-05      0.46     135     194 ..      27      91 ..      17     104 .. 0.77
   2 ?   -1.8   0.1      0.25   2.2e+03     109     121 ..     496     508 ..     494     518 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 5.2e-05
  Peptidase_C26 135 gltdhreheqsaashavkvekgsllaellg..seeievnslHhqaike...laeelrveAvaeDg 194
                    ++++  ++ + +++ ++++++++  +++++  ++e ++ns+Hh   ke   la+e ++ A+++D+
     CCD23120.1  27 DNENNNNNMKNNMKNNISINEDKNKNNIVSflTDESDINSIHHRIDKEkyqLAKEREIQATTTDD 91 
                    3333444446889999****99999998865689*********9777688899999999998843 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.25
  Peptidase_C26 109 lgiCrGlqllnva 121
                    l+ C+G+q+l + 
     CCD23120.1 496 LSLCLGFQILSII 508
                    689******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1155  (0.0644208); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 3621.55
//
Query:       CCD23121.1  [L=1021]
Description: hypothetical protein NDAI_0B00870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-35  121.3   0.0      5e-35  120.0   0.0    1.8  1  XPG_N       XPG N-terminal domain
    2.1e-24   85.7   0.0    1.4e-23   83.0   0.0    2.6  1  XPG_I       XPG I-region
     0.0045   17.6   3.4       0.01   16.4   0.0    3.2  3  5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold


Domain annotation for each model (and alignments):
>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.0   0.0   8.3e-39     5e-35       1     100 [.       1      97 [.       1      98 [. 0.99

  Alignments for each domain:
  == domain 1  score: 120.0 bits;  conditional E-value: 8.3e-39
                 X--TTHHHHHHHH-GEEEEEGGGGTTEEEEEEHHHHHHHHHHHSE.ETTEE-BS-HHHHHHHHHHHHHHHTTEEEEEEE--S--GGGHHHHHHHHHHHH CS
       XPG_N   1 MGikgLlkllkevaairsvsiealegkklaiDaslwlyrfliavreqlgnalentshlmglfsrllrlldfgikPifVFdgkapdlkkeelekrserrq 99 
                 MG+++++++++ +   ++v++e+l++kk+aiDas+w+y+fl+avr+++gn+++n sh++g+f+r+++ll+fgikP+fVFdg++p lk+e++++r+e+rq
  CCD23121.1   1 MGVHSFWDVVARTS--KPVRLESLQDKKMAIDASIWIYQFLKAVRDENGNKVKN-SHITGFFRRICKLLYFGIKPVFVFDGGVPVLKRETIRQRREIRQ 96 
                 **************..**************************************.******************************************98 PP

                 H CS
       XPG_N 100 e 100
                  
  CCD23121.1  97 G 97 
                 5 PP

>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   2.4e-27   1.4e-23       3      94 .]     771     853 ..     769     853 .. 0.95

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 2.4e-27
                 HT--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT..EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCET CS
       XPG_I   3 mgipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkkkekekkkvevidlekvlkelgltreqlidlaillgcD 94 
                 +gip++vAp+EAEAqca+L + +lvd+++++DsD++lFG++kv++n++  ++k       ++ve +d  ++l+++gl+r ++i++a llg+D
  CCD23121.1 771 FGIPFIVAPMEAEAQCAELLHLNLVDGIVTDDSDVFLFGGSKVYKNMF--HEK-------NYVEFYDSASILRNIGLDRINMIEMAQLLGSD 853
                 8**********************************************9..433.......46****************************99 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.9       1.1   6.6e+03      50      80 ..     458     488 ..     434     501 .. 0.54
   2 ?   -1.4   0.0      0.63   3.8e+03      52      77 ..     697     722 ..     684     732 .. 0.79
   3 !   16.4   0.0   1.7e-06      0.01       6      73 ..     843     907 ..     841     930 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.1
  5_3_exonuc  50 elkekklkekLeenkeearlskkLatiktdv 80 
                   k++k++++ +en  e +  + Lat+ +++
  CCD23121.1 458 AKKTNKIEDSEKENIAEQQTKQFLATLPDEI 488
                 2233445555555555566666688876665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.63
  5_3_exonuc  52 kekklkekLeenkeearlskkLatik 77 
                 +e++l e+++++++e + +k+L+ ++
  CCD23121.1 697 EEENLTENIRKEQQEFEAFKDLTLLN 722
                 45789999999999999999998776 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 1.7e-06
  5_3_exonuc   6 iidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenld..elkekklkekLeenkeearlskkL 73 
                 +i+++ L G  sD   Gv+g+G+    ++++e+g+l +  e  +  +++ekk   + +e+k e +l k+L
  CCD23121.1 843 MIEMAQLLG--SDYTNGVKGMGPVSSLEIIAEFGNLRKFKEWYEegQFNEKK---QENESKFEKDLRKRL 907
                 677777777..89999**********************99977633222222...112222223334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1654  (0.0922528); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.23s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 7066.84
//
Query:       CCD23122.1  [L=372]
Description: hypothetical protein NDAI_0B00880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-61  202.4   4.1    9.9e-22   76.7   0.1    3.8  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.7   4.4e-20   7.8e-16       3      91 ..       9     152 ..       7     154 .. 0.86
   2 !   65.9   0.0   1.3e-22   2.3e-18       4      93 ..     161     255 ..     158     258 .. 0.90
   3 !   76.7   0.1   5.5e-26   9.9e-22       2      94 ..     267     371 ..     266     372 .] 0.93

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 4.4e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH........................................................CCCSSTTTSC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqt........................................................qkksskksks 45 
                 l++++++l+++ + ++++l  tP+dvv++rlq                                                         +  ++++ ++
  CCD23122.1   9 LTLQQRMLSACSGSLLTSLTLTPMDVVRIRLQQqellpdcscgpiekvitasvskqklktdlstvqaklvapiinknklfwespcfqqlN-CKNSSVRF 106
                 6788999999999999**********************************9999988888888888888888888888888777776532.22333444 PP

                 SSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  46 aaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                 +++++++ ki k eG++ l+rG+++nll+ +pa+ ++f+ ye++++
  CCD23122.1 107 NSTWEAFTKISKLEGITTLWRGISINLLMAVPANIVYFTGYEYMRD 152
                 55****************************************9985 PP

  == domain 2  score: 65.9 bits;  conditional E-value: 1.3e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHH.HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGl.rglyrGllpnllrvapasalkfvlyetlkrll 93 
                 + ++ ll+G++a +va++v++Pl++ Kt+lq+ ++ssk++ s      +l+  ++ +k +G+ r+l++Gl ++l r +p sa+++++ye++k+++
  CCD23122.1 161 PNFNPLLCGAFARIVAATVVAPLELTKTKLQSIPRSSKSTSSWMlireLLKETRQEMKVNGIyRALFKGLEITLWRDVPFSAIYWGSYEFCKNHF 255
                 67899********************************9999888966666666666799999999***************************998 PP

  == domain 3  score: 76.7 bits;  conditional E-value: 5.5e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH............CCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqt............qkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyet 88 
                 ++++++++++G+++g++a+++t+P+dv Ktr q+            ++k++k+  s+++++ l++i+k+eG  +ly Gllp+++++ap+ a++ ++ye 
  CCD23122.1 267 WIQFINSFVSGSVSGTLAAIFTHPFDVGKTRWQIsffnapdkalvtSSKNNKAVVSKNMFKFLGNIWKTEGAGALYVGLLPRIIKIAPSCAIMISSYEI 365
                 899***********************************99988887677777777777***************************************** PP

                 HHHHHC CS
   Mito_carr  89 lkrlll 94 
                  k++++
  CCD23122.1 366 SKKIFN 371
                 ***997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2823.82
//
Query:       CCD23123.1  [L=201]
Description: hypothetical protein NDAI_0B00890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-59  199.1   8.7    2.6e-59  199.1   8.7    1.9  2  NOP19      Nucleolar protein 19
  ------ inclusion threshold ------
      0.012   15.1   0.1       0.02   14.4   0.1    1.3  1  C_LFY_FLO  DNA Binding Domain (C-terminal) Leafy/Floricaula
        6.5    6.5   8.4        0.4   10.4   3.0    1.7  2  Gar1       Gar1/Naf1 RNA binding region


Domain annotation for each model (and alignments):
>> NOP19  Nucleolar protein 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.1   8.7   4.3e-63   2.6e-59       1     142 []       1     143 [.       1     143 [. 0.97
   2 ?   -0.4   0.6      0.15   9.2e+02     114     122 ..     168     176 ..     145     198 .. 0.48

  Alignments for each domain:
  == domain 1  score: 199.1 bits;  conditional E-value: 4.3e-63
       NOP19   1 msrakeikekleLqaklqlsfsknnakvlsWleeseeekssss...edkeeledskkaFfnLpvvqiGsGLsfseeeeesskedihtiGeFiksdkkvs 96 
                 msra+ei+ekl+Lqaklql++s++++kv++Wle+s++e++++s   ed++eledsk+aFfnLpvvqiGsGL+f+ +  e+sk+dihtiGeFi+sdkk+s
  CCD23123.1   1 MSRAQEIQEKLDLQAKLQLALSNKSSKVAAWLESSTDETKDRSkeiEDAKELEDSKNAFFNLPVVQIGSGLHFAYN--ETSKDDIHTIGEFINSDKKIS 97 
                 9***********************************999999988999*************************996..6899***************** PP

       NOP19  97 slakkkkkkeksskrnsiyrvskddtkamvaLkrkmrkeerekirq 142
                 sl+kkkk++e ++ rn+iyr++kddtkamvaLkrkmr++++ ++rq
  CCD23123.1  98 SLSKKKKRNEPTDVRNDIYRIAKDDTKAMVALKRKMRHGQKMALRQ 143
                 *****************************************99986 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.15
       NOP19 114 iyrvskddt 122
                   ++s+dd 
  CCD23123.1 168 DAHSSSDDE 176
                 222222222 PP

>> C_LFY_FLO  DNA Binding Domain (C-terminal) Leafy/Floricaula
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   3.4e-06      0.02      47      87 ..      95     136 ..      81     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.4e-06
   C_LFY_FLO  47 qvqalakekgekcptkvtnqvfryakkag.asyinkpkmrhy 87 
                 ++ +l+k+k ++ pt v n+++r ak    a    k kmrh 
  CCD23123.1  95 KISSLSKKKKRNEPTDVRNDIYRIAKDDTkAMVALKRKMRHG 136
                 678999********************8651566679****95 PP

>> Gar1  Gar1/Naf1 RNA binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3      0.68   4.1e+03     138     147 ..      35      44 ..       7      58 .. 0.54
   2 ?   10.4   3.0   6.7e-05       0.4      74     152 ..     114     187 ..     110     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.68
                 XXXXXXXXXX CS
        Gar1 138 sdDekeaeak 147
                 s De + + k
  CCD23123.1  35 STDETKDRSK 44 
                 2222222222 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 6.7e-05
                 -EEEEE--GGHHHHH..HHTTTTSEEEEE-X..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Gar1  74 pyysVklnsseeika..ksfkvgdkvyiapdlplerfllteelkkkkgpdasnendeElpeeevefsdDekeaeakkkkkg 152
                  +y++  ++++ + a  +++  g+k+    d  l++ +     +kk  +++  +n  + ++++   sdDe++++ +k+ k+
  CCD23123.1 114 DIYRIAKDDTKAMVAlkRKMRHGQKMALRQD--LAESV-----NKKTSVEPESRNTSNAKNDAHSSSDDEADMRNQKSTKK 187
                 5677777777777775578999999999999..77777.....7888899999999999999**********999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2001  (0.111607); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1462.99
//
Query:       CCD23124.1  [L=436]
Description: hypothetical protein NDAI_0B00900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-41  141.9   0.0    4.4e-41  140.6   0.0    1.7  2  DEAD        DEAD/DEAH box helicase
    3.9e-29  101.2   0.0    2.9e-28   98.4   0.0    2.4  2  Helicase_C  Helicase conserved C-terminal domain
    0.00033   20.7   0.0    0.00081   19.4   0.0    1.7  2  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.0   7.4e-45   4.4e-41       1     175 [.      31     202 ..      31     203 .. 0.92
   2 ?   -2.7   0.0      0.71   4.2e+03      64     104 ..     272     316 ..     263     319 .. 0.61

  Alignments for each domain:
  == domain 1  score: 140.6 bits;  conditional E-value: 7.4e-45
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 t+iQ+++ip+il+g+d+++ a+TGsGKT af+ p+l + +e  +  g   ++++PtreLa q++++++ +++ +++rv  ++gg++  +q  +l+n+++
  CCD23124.1  31 TAIQSACIPEILKGRDCIGGAKTGSGKTIAFAGPMLTKWSE--DPCGMFGVVLTPTRELAMQIAEQFTALGSSMNIRVAIVVGGQSIVEQAIQLQNKPH 127
                 79***********************************9987..9******************************************************* PP

                 EEEEEHHHHHHHH....HCTSSH...CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxx....xxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddll....stgkln...lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 ++++tpgrl++++    ++   +   l++ +flVlDEad ll ++f  ++ +++ +lp      k +rq+++++AT++++v++
  CCD23124.1 128 FIIATPGRLAHHImnsgED---TvggLKRTKFLVLDEADSLLTDSFAGDLATCIGALP-----PKHKRQTLLFTATITDQVRT 202
                 ***********88864422...2345*******************************6.....336688*********88876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.71
                 HHHHHHHTTTSTSEEEEEET...TSSHHHHHHHHH.TTCSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxx.xxxxxxxxx RF
        DEAD  64 lnnlkkfkkyidlrvlliig...gvaardqlskld.ngvdivvgt 104
                 ++ l++ + ++d+rv ++ +   ++++++ l +++ n ++++v+t
  CCD23124.1 272 AEVLRRTLYHLDVRVASLHSympQQERTNSLHRFRaNAARVLVAT 316
                 455566666677777776552234445555555552448888877 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.49   2.9e+03      14      29 ..     184     199 ..     173     225 .. 0.73
   2 !   98.4   0.0   4.8e-32   2.9e-28       3     111 .]     245     354 ..     243     354 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.49
                 TTTSEEEEEESSHHHH CS
  Helicase_C  14 eeggkilifvntidrl 29 
                 ++++++l+f+ ti++ 
  CCD23124.1 184 KHKRQTLLFTATITDQ 199
                 6788999999999844 PP

  == domain 2  score: 98.4 bits;  conditional E-value: 4.8e-32
                 HHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   3 leallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                  ++l++ll  ++ +++ ++ifvn+  ++e ++  l + +++va lh+ +pq+er  +l++f+++  +vL+atdva+rG+dip v+lVin+d+p +++++
  CCD23124.1 245 EAYLYQLLtCETYKDSSAIIFVNRAMTAEVLRRTLYHLDVRVASLHSYMPQQERTNSLHRFRANAARVLVATDVAARGLDIPIVELVINYDIPSDPDTF 343
                 67899999889999999*********9955333333449************************************************************ PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                 i+r+GRt+Rag
  CCD23124.1 344 IHRAGRTARAG 354
                 *********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.4e-07   0.00081      32     169 ..      52     196 ..      29     198 .. 0.77
   2 ?   -3.1   0.2       1.1   6.8e+03      64      84 ..     391     411 ..     372     432 .. 0.52

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.4e-07
                 STTSTHHHHHHHHHHHH-S.....-E.EEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH........HH CS
      ResIII  32 aTGtGKTlvaaklierllkkgkeekf.lflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadseeeeeeseel 128
                  TG+GKT+  a  +   +++ +   f ++l p+++l  q  e+f+ + s+ + ++  +v g++  +   + +++ +++++t  +l  ++++ + e++  
  CCD23124.1  52 KTGSGKTIAFAGPMLTKWSEDPCGMFgVVLTPTRELAMQIAEQFTALGSSMNIRVAIVVGGQSIVEqAIQLQNKPHFIIATPGRLAHHIMN-SGEDTVG 149
                 7***********999999987777655899********************98776666666666663344577888999999999999955.8999999 PP

                 HTTT-SEEEEETGGGTTS.TTTHHHHHT-...--...SEEEEEESS- CS
      ResIII 129 lrdrfdviiiDEaHrlgakkswreilekf...ke...avllglTATp 169
                 + +r ++++ DEa  l  +++   ++ ++   ++      l +TAT+
  CCD23124.1 150 GLKRTKFLVLDEADSLLTDSFAGDLATCIgalPPkhkRQTLLFTATI 196
                 999999******98888865444444444222113335667778876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.1
                 HHHHHHHHHHGGGGTGG.... CS
      ResIII  64 kslleqtleefkkflseayke 84 
                 ++++ ++l++++k + e  ++
  CCD23124.1 391 TAVIRKALTKVTKAKRESLMA 411
                 444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3061.58
//
Query:       CCD23125.1  [L=272]
Description: hypothetical protein NDAI_0B00910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        0.1   11.8   0.2       0.24   10.7   0.2    1.5  1  Engrail_1_C_sig  Engrailed homeobox C-terminal signature doma
       0.51   10.6   2.0         12    6.2   0.1    2.7  2  Peptidase_S41_N  N-terminal domain of Peptidase_S41 in eukary


Domain annotation for each model (and alignments):
>> Engrail_1_C_sig  Engrailed homeobox C-terminal signature domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   2.6e-05      0.24      13      19 ..     235     241 ..     233     241 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.6e-05
  Engrail_1_C_sig  13 MAQGLYN 19 
                      MAQGLYN
       CCD23125.1 235 MAQGLYN 241
                      ******* PP

>> Peptidase_S41_N  N-terminal domain of Peptidase_S41 in eukaryotic IRBP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.011        96      19      66 ..      12      57 ..       1     112 [. 0.63
   2 ?    6.2   0.1    0.0013        12      40      70 ..     225     255 ..     220     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.011
                     HHHHHHHH-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Peptidase_S41_N 19 pkvveelaelladnYafeevvaavlekLasllakgdyssvvseedLas 66
                     pkv  ++ +l++  Y+f+++v++  +++++ + k+++++   + ++++
       CCD23125.1 12 PKVHDTIYKLIRLGYSFQDIVQE--SHINADFLKKTFKELGLNIQITT 57
                     44445667899999999999986..45555544555555555555554 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0013
                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Peptidase_S41_N  40 aavlekLasllakgdyssvvseedLaskLna 70 
                      ++v ++L++++a+g y+ v++ ++L+ + ++
       CCD23125.1 225 EEVISELRRTMAQGLYNLVQDVQSLKRNSEE 255
                      78999********************976555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1917.02
//
Query:       CCD23126.1  [L=426]
Description: hypothetical protein NDAI_0B00920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     1e-128  429.4   0.0   1.2e-128  429.2   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.2   0.0  6.6e-133  1.2e-128       1     342 []      16     371 ..      16     371 .. 0.97

  Alignments for each domain:
  == domain 1  score: 429.2 bits;  conditional E-value: 6.6e-133
                   CCCS-EEETTEEESSSEEE----S-TTTTTCS.HH.HHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EE CS
  Oxidored_FMN   1 kLFkPikignmtLknRivmapmtrlraldkgnvle.dlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskv 96 
                   +LFkP kign++Lk+R+vm+p+tr+ra+++gn+++ ++a eyy+qr+++p+t++ite++f++p+ gg+dnapgiw++eq+ +w+ +++ vh+n+s++
    CCD23126.1  16 NLFKPTKIGNTELKHRAVMPPLTRMRAEHPGNIPNrKWAYEYYKQRSQRPGTMLITEGTFISPQAGGYDNAPGIWSQEQMDQWKHIFKGVHDNKSFI 112
                   69*********************************************************************************************** PP

                   EEEEE--GGGS..SCSTCEC....SS.E...SSSSSTTT-.....S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH- CS
  Oxidored_FMN  97 vvqlwhlGreakseyladqe..vdspsd...pvaldaqee....esaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFls 184
                   +vqlw lG++a+ ++la+++  +ds+ d   ++++d++ e    ++++++  + ltk+eikq+i+e+v+AAk++i++g+Dg+eih+anGYLlnqFl+
    CCD23126.1 113 WVQLWSLGWQAFPDTLARDGlrYDSATDgsaNIYMDEESElkakKANNPQ--HGLTKNEIKQYIEEYVQAAKNSIACGADGIEIHSANGYLLNQFLD 207
                   *******************9998888762226678888779888888888..********************************************* PP

                   TTT----STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHH...HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHC CS
  Oxidored_FMN 185 pksnkrtDeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaet...aqkivllkelekrlkdgkklalvhaaeprkrgagsvrt 278
                   p sn+rtDeyg s+enRarF+lev daV++avg ervg+R+Sp++ +++++++++    a+++++l+elekr+k+gk+la+vh++epr+++++ ++ 
    CCD23126.1 208 PMSNQRTDEYGNSIENRARFVLEVTDAVVKAVGPERVGIRFSPYGKFGNMSGGSDPdllAEYCYILGELEKRAKNGKRLAYVHLVEPRVTNPFLKEG 304
                   ***********************************************************************************************99 PP

                   C..TT.HHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCGG CS
  Oxidored_FMN 279 e..qe.kntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpln 342
                   e  ++ ++++f +++wk+p+i+ g+ a +++ a+ + +++++L ++gR f+a+pdlv++l++g pln
    CCD23126.1 305 EgeYTdGTNDFAYSIWKGPIIRSGNLALHPEIAKDLLQDDRTLLGYGRFFIANPDLVDRLEYGEPLN 371
                   88788899******************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 2966.15
//
Query:       CCD23127.1  [L=940]
Description: hypothetical protein NDAI_0B00930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-26   90.5   1.1    1.5e-07   31.2   0.2    5.7  4  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
     0.0024   18.0   0.0        0.4   10.8   0.0    3.7  4  RRM_7     RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.2   1.6e-11   1.5e-07       1      69 [.     194     275 ..     194     275 .. 0.82
   2 !   12.0   0.0   1.6e-05      0.14      38      69 ..     407     438 ..     397     439 .. 0.91
   3 !   24.3   0.0   2.2e-09     2e-05       1      36 [.     740     774 ..     740     780 .. 0.88
   4 !   12.5   0.0   1.1e-05     0.097      35      61 ..     831     857 ..     817     865 .. 0.84

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.6e-11
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.....TTT........SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.....etg........kskgfafVeFeskedAekAlealngkklggrel 69 
                 lf+g++++++t e++ +++ k+G i+s+kl  +     +++        +++g++fV F+  ++A +++++lngk ++g++l
  CCD23127.1 194 LFIGGVNKNMTLENMTDYLCKYGHISSLKLLQNennskNNKsnndseilSNTGYGFVSFQLGSQASNCINELNGKLFKGSKL 275
                 8******************************998644322212222222357**************************9875 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 1.6e-05
                 EEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  38 skgfafVeFeskedAekAlealngkklggrel 69 
                  kg++f++  ++e+A ++++++n+++ +g++l
  CCD23127.1 407 LKGYGFINVLNHEQALQIIAKFNNYEWNGSRL 438
                 69************************999876 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 2.2e-09
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTT CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetg 36 
                 l+V+ Lp d ++++L+++F ++G i s+k+++   g
  CCD23127.1 740 LYVKYLPLDWDDDDLYDFFVQYGNIISAKVITV-GG 774
                 8******************************96.33 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 1.1e-05
                 TTSEEEEEEEEESSHHHHHHHHHHHTT CS
       RRM_1  35 tgkskgfafVeFeskedAekAlealng 61 
                  g skg++fV Fe++ dA +A+   +g
  CCD23127.1 831 IGISKGYGFVCFENPLDASQAILGTDG 857
                 5679*****************987777 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   4.5e-05       0.4       4      83 ..     194     281 ..     192     292 .. 0.69
   2 ?   -2.9   0.0      0.87   7.8e+03      43      65 ..     401     424 ..     388     432 .. 0.74
   3 ?    2.0   0.0     0.025   2.2e+02       5      28 ..     741     764 ..     738     785 .. 0.87
   4 ?   -2.9   0.0      0.88   7.9e+03      45      59 ..     830     844 ..     819     850 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.5e-05
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaae.....nskaakgyvflvfedeksvkaLleacteee...eelylklss 83 
                 +F+GG+  ++t e++++ + ++g+++     ++e+++k+++     +  +++gy f+ f+  +   + +++ + +    ++l+l+ + 
  CCD23127.1 194 LFIGGVNKNMTLENMTDYLCKYGHISSLKLLQNENNSKNNKsnndsEILSNTGYGFVSFQLGSQASNCINELNGKLfkgSKLFLNYHV 281
                 7**********************9864433343333333333444577899********99888777777765554444666665555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.87
       RRM_7  43 aenskaakgyvfl.vfedeksvka 65 
                 +en  + kgy f+ v ++e++++ 
  CCD23127.1 401 TENALPLKGYGFInVLNHEQALQI 424
                 447788999999867788887764 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.025
       RRM_7   5 FvGGlPiDiteeelkatfkefgkv 28 
                 +v  lP D ++++l++ f ++g++
  CCD23127.1 741 YVKYLPLDWDDDDLYDFFVQYGNI 764
                 67779*****************87 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 0.88
       RRM_7  45 nskaakgyvflvfed 59 
                 +    kgy f+ fe+
  CCD23127.1 830 KIGISKGYGFVCFEN 844
                 445678*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (940 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1410  (0.0786435); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 6515.78
//
Query:       CCD23128.1  [L=526]
Description: hypothetical protein NDAI_0B00940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-21   76.7   2.8    6.1e-21   74.8   2.8    2.1  1  HSF_DNA-bind  HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> HSF_DNA-bind  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   2.8   3.4e-25   6.1e-21       1      96 []       6     119 ..       6     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 3.4e-25
                   HHHHHHHHHCT...TTTSEESS.SSSEEEES-HH.HHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSB..........TTB--TTSEEEEE..S CS
  HSF_DNA-bind   1 FlkkLyklled...eelisWse.dgksfvvkdke.efakevlpkyfkhsnfssFvrqLnlYgFrkvkrkee..........kkkkkskvweFsh..e 80 
                   F+++L+ +l++   ++ i+W + +++ f++k+ + +f+++vl+kyfkh n+ssFvrqL++YgF+k+++++            +++ +++w F+h  +
    CCD23128.1   6 FVNQLHLILQQkglHQWIRWYSiEKSIFLLKPYDpNFSEKVLKKYFKHGNISSFVRQLHMYGFHKISSNDLpnsilnsnpnPNNRINTIWYFAHpsG 102
                   99*******99777777***774788899999999******************************77544477888888877888889******977 PP

                   S--XXXXXX.XXXXXXX CS
  HSF_DNA-bind  81 nFkrgkpel.Lkkikrk 96 
                   +F++ +++  Lkki+rk
    CCD23128.1 103 FFTQTSTNEiLKKIQRK 119
                   8888776545*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1572  (0.0876792); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3949.96
//
Query:       CCD23129.1  [L=237]
Description: hypothetical protein NDAI_0B00950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-07   29.6   0.0    8.9e-07   29.0   0.0    1.2  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   4.9e-11   8.9e-07       8     137 ..       3     139 ..       1     142 [. 0.72

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 4.9e-11
                      HHHHHHHHHHHHHHHHHHS-EEEEE.--SHCHHHHHHHHHCSG.GGG...GS-GGGEEEEESEEESS-TTSTT-HHHHHHHHTGGGS---GG.. CS
  Glucosamine_iso   8 ealaarivealeealaergraslal.sGGstpkalyealaeeeeaaa...aldwskvhvflgDERfVpaddpdsNaklareallskvkipea.. 95 
                      ++l ++i+e ++e+l++ +r+++ +     +  +l e l ++ +  +   +++w ++++fl+ E +V+ +dp s ++++++++++++  + +  
       CCD23129.1   3 SDLVKKIIEIQNEVLKKSDRFKVGVlPSKGLIDKLSEILIDKIDV-ElfkQIKWPQWDIFLCEENLVEFSDPLSQYGQLERNFIERITHKGDsl 95 
                      5788999**************996525555777788888865543.35889**********************************986655567 PP

                      ....GEE-S-TTSST.HHHHHHHHHHHHHHHHCCSSSSSESEEEE-- CS
  Glucosamine_iso  96 ....nvhpikesaae.apeaaaaayeeelkellakelpvfDlvlLGm 137
                           v++i+es  +  +e+   ++++e  ++l+   +++Dl+l G+
       CCD23129.1  96 nfgpVVITINESMIDmMHENKEIKIAKEFDTFLP---QSLDLILTGF 139
                      5555566665433322223444444444444443...5688888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1813.74
//
Query:       CCD23130.1  [L=217]
Description: hypothetical protein NDAI_0B00960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-73  246.9   0.4    1.7e-73  246.6   0.4    1.1  1  CPDase           Cyclic phosphodiesterase-like protein
     0.0026   17.7   0.0      0.006   16.5   0.0    1.7  1  2_5_RNA_ligase2  2'-5' RNA ligase superfamily


Domain annotation for each model (and alignments):
>> CPDase  Cyclic phosphodiesterase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.6   0.4   1.9e-77   1.7e-73       1     198 [.       1     216 [.       1     217 [] 0.97

  Alignments for each domain:
  == domain 1  score: 246.6 bits;  conditional E-value: 1.9e-77
      CPDase   1 mgisLWlcPpanspeyetlktlIqsLqtlfpdsevFePHvTltselsvdskddvekvldsavaalksvrsgl....aalvkfegvsvgkkYfkkvvlev 95 
                 m++ LW+cPp++s++yetl+tlIqs+qtlfp+s+vFePH+Tl ++l+v +kddv+kvl+ +vaa++s+++      ++lv+++g+ +gk+Yf+kv l++
  CCD23130.1   1 MTVVLWYCPPPGSTAYETLNTLIQSIQTLFPNSPVFEPHITLNTHLTVSTKDDVNKVLTYCVAAMNSIKKSIekenKSLVRMNGFVTGKSYFQKVKLSC 99 
                 8999****************************************************************988888889********************** PP

      CPDase  96 kkdkellslaqlireafveaedeas...qraaewvkeefePHvSLlYsDislvdqaelrvvrqriedaldvale...........nesgkgwkipgtfk 180
                 + dk+lls+aq+ire fve e++++    +a++wv+++f+PHvSLlYsDi++++ a  ++++qried+l+v+              ++  +w ip tfk
  CCD23130.1 100 ELDKYLLSIAQIIRELFVESEQNTElkkLNAQNWVHNDFKPHVSLLYSDIYPISPAFTKIIQQRIEDTLGVKVIsneadewkfdqIPKNVSWGIPATFK 198
                 *********************998888789***************************************99988899******9888999********* PP

      CPDase 181 vVrcegpveeWevlgkvd 198
                 vV+cegp+eeWevlg+ d
  CCD23130.1 199 VVNCEGPIEEWEVLGRTD 216
                 ***************987 PP

>> 2_5_RNA_ligase2  2'-5' RNA ligase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.7e-07     0.006       9     129 ..      23     159 ..       8     185 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.7e-07
  2_5_RNA_ligase2   9 iealrrslydkayprwppHitLlypfvededl.........adlaellsrlaketepfevrldgfgvFehkksvvylsvsdsealqalraalle 93 
                      i++++     ++ p  +pHitL    + +  +          ++++ +++ ++ + +  vr +gf +  +  + v ls + ++ l  + + ++e
       CCD23130.1  23 IQSIQ--TLFPNSPVFEPHITLNTHLTVSTKDdvnkvltycVAAMNSIKKSIEKENKSLVRMNGFVTGKSYFQKVKLSCELDKYLLSIAQIIRE 114
                      44444..4445556666*****999999888556666666666666666666688889999999999855333555555666666666666666 PP

  2_5_RNA_ligase2  94 alpeagdkeds..........geftPHlTiaqsadstsaaellekl 129
                       + e ++  +            +f+PH+++ +s+  ++ + +++k+
       CCD23130.1 115 LFVESEQNTELkklnaqnwvhNDFKPHVSLLYSDI-YPISPAFTKI 159
                      6555543332245678889*************994.4445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1725.53
//
Query:       CCD23131.1  [L=636]
Description: hypothetical protein NDAI_0B00970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.6e-55  183.1   0.7    1.3e-27   95.6   0.1    2.6  2  TFIIB         Transcription factor TFIIB repeat
    6.1e-30  103.5   3.0    6.1e-30  103.5   3.0    3.2  3  BRF1          Brf1-like TBP-binding domain
      3e-10   39.4   2.9    6.9e-10   38.3   2.9    1.6  1  TF_Zn_Ribbon  TFIIB zinc-binding
      0.001   18.8   0.1       0.83    9.4   0.0    2.5  2  Cyclin_N      Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> TFIIB  Transcription factor TFIIB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0     4e-28   1.8e-24       3      71 .]      92     160 ..      90     160 .. 0.97
   2 !   95.6   0.1     3e-31   1.3e-27       1      71 []     185     258 ..     185     258 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 4e-28
                 HHHHHTT--HHHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHHH CS
       TFIIB   3 rfadaleLpekVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekti 71 
                 +++ al +pe+++daA++++klal+ ++++Gr++++++A+cly+Acrke+++++++++ss+lqVs+++i
  CCD23131.1  92 AVSHALSIPEYITDAAFQWYKLALAYNFVQGRRSQNVIASCLYVACRKEKTHHMLIDFSSRLQVSVYSI 160
                 57899*************************************************************997 PP

  == domain 2  score: 95.6 bits;  conditional E-value: 3e-31
                 HHHHHHHTT--H...HHHHHHHHHHHHHTTSTTTTSGCTTHHHTTHHHHHHTTTTSS--HHHHHHHSS--SHHH CS
       TFIIB   1 ikrfadaleLpe...kVadaAkelaklaleekvlkGrspagiaAAclyiAcrkeevkrtqkeissvlqVsekti 71 
                 i++fa++l+L +   kV ++A++la++++ +++ +Gr+pagia+Ac+++Acr+++++rt++ei++v++V+e+t+
  CCD23131.1 185 IQHFAEKLDLGDkkiKVVKDAVKLAQRMSHDWMFEGRRPAGIAGACVLLACRMNNLRRTHSEIVAVSHVAEETL 258
                 89**********999*********************************************************97 PP

>> BRF1  Brf1-like TBP-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.3      0.43   1.9e+03      55      79 ..     312     338 ..     276     355 .. 0.56
   2 ?   -1.1   2.0      0.55   2.4e+03      32      84 ..     360     425 ..     315     431 .. 0.56
   3 !  103.5   3.0   1.4e-33   6.1e-30       1     101 []     500     636 .]     500     636 .] 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.43
        BRF1  55 kkkkrkrkkkekkk.gep....etaaeavk 79 
                 ++k+    kk k++ +++    et ++av+
  CCD23131.1 312 NRKNE---KKIKEHlETEnellETSEDAVN 338
                 11111...1111111111234566666654 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.55
        BRF1  32 yLeeqeekrlkeeaeeae............adkkkkkkkrkrkkkekkkgep...etaaeavkkmlek 84 
                 yL++  ++r+ + +   +            ++++ +++ r   +k+ +k++p   +t+++ ++++++ 
  CCD23131.1 360 YLKQFSKRRESAIQRI-KsthgidgsnlygNSENPTSRSRS-GSKSLSKETPdgvATTQDGTEEAVKD 425
                 4444333333333322.235677777776433333333333.33222222234677777777777664 PP

  == domain 3  score: 103.5 bits;  conditional E-value: 1.4e-33
        BRF1   1 sdidddeideyllseeevkiKeriWvelnkeyLeeqeekrlkeeaeeaeadkkkkkkkrkrkkkekkkgep............................ 71 
                 +d+ddde+d++ll+ee++++KeriW ++n++yL eqe+krlkeea+  + ++ +kk++r++  ++k+ +++                            
  CCD23131.1 500 EDVDDDELDALLLDEEASQLKERIWIGINSDYLLEQENKRLKEEADLLTGNTATKKRRRNNGGSRKRAKTEpdskanlahsamglmsqfqdrtglqaal 598
                 69***********************************************6666666655544444333222577889999******************* PP

        BRF1  72 ........etaaeavkkmlekkklskkINydaLekLfd 101
                          taa++vk+ml+k ++skkINyda+++Lf+
  CCD23131.1 599 kaaeesgdLTAADSVKNMLQKATFSKKINYDAIDGLFS 636
                 ************************************95 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   2.9   1.5e-13   6.9e-10       2      42 ..       3      45 ..       2      46 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 1.5e-13
                  EETTTTCEECHEE..TSTTCEEESSSSBEEEECCCCCCCHHHH CS
  TF_Zn_Ribbon  2 kCPnCgstnlveD..pergelvCtdCGlVlednsidegpewre 42
                  +C+ C++t++++D  +++ +lvC++CG V edn+i++++++ e
    CCD23131.1  3 VCKSCKGTEFERDhsNANSDLVCKSCGFVSEDNPIVSEVTFGE 45
                  7************88888899******************9987 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00019      0.83      49      95 ..     101     147 ..      72     167 .. 0.78
   2 !    6.7   0.0    0.0012       5.6      55      92 ..     205     259 ..     186     285 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00019
                 TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---H CS
    Cyclin_N  49 petlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkl 95 
                 + +   a + +   l+ + v+ ++ q v a+cL++A++ e+++ + +
  CCD23131.1 101 EYITDAAFQWYKLALAYNFVQGRRSQNVIASCLYVACRKEKTHHMLI 147
                 5555556666666677778888999**************99986655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHS---CCCHHHHHHHHHHHHHHH.................HSSS- CS
    Cyclin_N  55 avnyldRflskksvpkdklqlvgatcLllAaKv.................eeisp 92 
                 av++  R+ +   ++ ++   ++ +c+llA+++                 ee+  
  CCD23131.1 205 AVKLAQRMSHDWMFEGRRPAGIAGACVLLACRMnnlrrthseivavshvaEETLQ 259
                 7788888888888888888999***********5544444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1200  (0.0669307); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4381.13
//
Query:       CCD23132.1  [L=793]
Description: hypothetical protein NDAI_0B00980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-101  339.4  37.0   2.9e-101  339.4  37.0    2.1  2  SDA1        SDA1
    7.5e-19   67.8   0.3    1.7e-18   66.7   0.3    1.7  1  NUC130_3NT  NUC130/3NT domain
  ------ inclusion threshold ------
        6.1    6.9  45.3          7    6.7   1.6    2.6  2  YL1         YL1 nuclear protein


Domain annotation for each model (and alignments):
>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.4    0.0063        38     105     151 ..     270     315 ..     256     368 .. 0.62
   2 !  339.4  37.0  4.8e-105  2.9e-101       1     348 []     463     792 ..     463     792 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0063
        SDA1 105 evesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekee 151
                 e e++ ++++d++++ idves + + +++++s +  ++ e+  ++  
  CCD23132.1 270 EREENFEENSDDDNDGIDVESLKHKLQVNKKSGKRGKKLENAIKT-V 315
                 222222223333444467766666555444333333222222221.1 PP

  == domain 2  score: 339.4 bits;  conditional E-value: 4.8e-105
        SDA1   1 mnedLLqDLveYkkskdKgVmmAArsLisLyRevnPelLkkkdrGkpaemelrs........ekkakkfGeeevaegieGleLlekwkeeekkekreee 91 
                 ++e+LLqDLveYk sk KgV mAA+sLisLyRev+Pe+LkkkdrGk+a++el+s         ++++++G e++++gi+G+eLl kwk+e+++ +    
  CCD23132.1 463 IDETLLQDLVEYKGSKAKGVNMAAKSLISLYREVAPEMLKKKDRGKTASLELQSlnkdgndkRSRRPQYGVENNVQGIQGIELLVKWKREQQEAAG--G 559
                 69***************************************************9887777666669**************************9998..3 PP

        SDA1  92 eedsddeddeedwevesddds...eedseggwidvesdee.eieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekkkkkakeas 186
                 e+d dd+d++++wev++++ s   ++d+++gw+ vesd+e +++++d  +d+e+  ++ +    k+eee+++   + e+e+ee+e+          + +
  CCD23132.1 560 END-DDDDNDANWEVAENSGSdseSDDDDNGWVAVESDKEyDVDMDD--DDDEDGTKKGN---GKDEEEDSD--LDLESEDEEKER----------KGK 640
                 333.457888999999988555577888899*********5555555..33333333333...333333443..223333333331..........233 PP

        SDA1 187 eeekkkekeeekiskaselattrILTpaDFaklkelraeaavkkqlesakrkkkkkkdeeeeeaeksedlvtasdieglakkrkatkeerlasvkegre 285
                 ++ + + ++e+++++   la+trILTpaDFaklkelr+e++v+k ++ ++++++kk  +      k+e+lv+a++++g++k+ k+t+eer+++++egre
  CCD23132.1 641 DNISVDFDSEAAFRE---LASTRILTPADFAKLKELRTEESVSKIMGVDNSSNRKKILG------KNEELVDAATLTGPVKY-KQTREERIQQAMEGRE 729
                 567899999*****9...*******************************9887766666......7899***********77.**************** PP

        SDA1 286 drekfgskkakkkekelksttNkeKarkKnfqMtkhk..vkskkkrslrekqkalrahlerqkkg 348
                 +rekfgs++   k ++ +sttN+eKarkKn +M++hk  v++k+k+slr+kqk+lrah+++qkkg
  CCD23132.1 730 GREKFGSRR--GKRENAHSTTNREKARKKNYVMMIHKrsVRGKQKMSLRDKQKVLRAHITKQKKG 792
                 *********..455555*******************99*************************96 PP

>> NUC130_3NT  NUC130/3NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.3   2.8e-22   1.7e-18       1      52 []      93     144 ..      93     144 .. 0.99

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 2.8e-22
  NUC130_3NT   1 FlaqvahcYpketkefpqeLselLlehhsvLhpdlRkklvqaLvlLRnKdiI 52 
                 F++qv++c+p et++fp eL++l+lehh +L+ +l++k+ ++L +LRnK +I
  CCD23132.1  93 FVSQVCSCFPRETANFPAELKQLILEHHVSLPFELKEKILTSLTILRNKSVI 144
                 9************************************************998 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.6    0.0012         7      48     105 ..     270     321 ..     237     370 .. 0.62
   2 ?    4.7  36.2    0.0048        29      20     167 ..     557     763 ..     550     793 .] 0.44

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0012
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  48 nsDsdfdsdeedeesdeeedeeegekelerqerkkrkkekkkrkaqkkkskkkkkkqk 105
                   +++f+++++d++ d+ + e     +l+  +++ +  + kk +  +++++ kkk+++
  CCD23132.1 270 EREENFEENSDDDN-DGIDVE-SLKHKLQVNKKSGK--RGKKLE--NAIKTVKKKNKN 321
                 25566767766544.333333.33334555555544..122322..233333332222 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0048
                 x......xxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx.............. RF
         YL1  20 e......edelellFaE..........eedDeefeseeeeeeeensDsdfdsdeedee.....sdeeedeeegekelerqerkkr.............. 83 
                 +      +d+ ++ ++           ++dD+++++ e+++e+   D+d+d+d++++      +++ee++++ + e e++e++++              
  CCD23132.1 557 AggenddDDDNDANWEVaensgsdsesDDDDNGWVAVESDKEY---DVDMDDDDDEDGtkkgnGKDEEEDSDLDLESEDEEKERKgkdnisvdfdseaa 652
                 25554433444444443447888887799999*****999986...88898888766688855223333333333334555555544777777766544 PP

                 ...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................................x RF
         YL1  84 ...............kkekkkrkaqkkkskkkkkkqkkkkkkkidp....................................................q 115
                                +                             +                                                    q
  CCD23132.1 653 frelastriltpadfA-----------------------------KlkelrteesvskimgvdnssnrkkilgkneelvdaatltgpvkykqtreeriQ 722
                 4444444444443322.............................022222233333355444444444444457777765544332222222222220 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF
         YL1 116 akeprpkkkseraswlpaeslltpkrRkssRastvenkeqleerlkereer.....r 167
                               +  + ++   +++  sR+  +en   + +r k r+++      
  CCD23132.1 723 --------------QAMEGRE--GREKFGSRRGKRENAHSTTNREKARKKNyvmmiH 763
                 ..............2222111..1123333333333333333333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1501  (0.0837191); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 5036.79
//
Query:       CCD23133.1  [L=430]
Description: hypothetical protein NDAI_0B00990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.6e-68  227.7   0.3    1.8e-67  226.9   0.3    1.4  1  ATP-grasp_2  ATP-grasp domain
    4.8e-26   91.4   0.1    8.8e-26   90.5   0.1    1.5  1  Ligase_CoA   CoA-ligase
    2.9e-06   26.9   0.0    5.6e-06   26.0   0.0    1.4  1  ATP-grasp_5  ATP-grasp domain
     0.0021   17.9   0.2     0.0048   16.7   0.2    1.6  1  GARS_A       Phosphoribosylglycinamide synthetase, ATP-grasp 
  ------ inclusion threshold ------
       0.11   12.8   0.2        6.5    7.1   0.0    2.9  3  TrkA_N       TrkA-N domain
       0.26   12.0   1.5        1.6    9.5   0.2    2.7  2  PTS_IIB      PTS system, Lactose/Cellobiose specific IIB subu


Domain annotation for each model (and alignments):
>> ATP-grasp_2  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.9   0.3   5.9e-71   1.8e-67       2     201 ..      29     235 ..      28     236 .. 0.97

  Alignments for each domain:
  == domain 1  score: 226.9 bits;  conditional E-value: 5.9e-71
                  E-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTSSS.EEEEE--SSSTCCCT.......TCEEEESSHHHHHHHHHCCTTSEEE-TTS-TT-EE CS
  ATP-grasp_2   2 lhEyqakeilakygvkvpegevaesaeeaeeaakklgeke.lvvKaQvlaGGRGKa.......gGvklvkskeeakeaakellgkelvtkqtgkeGkk 91 
                  +hEy++ e+l+kyg+++++g va++++ea +aakkl+ ++ lvvKaQ l+GGRGK+       +G++++ks+eea ++ +e+lg++l+tkq+g++Gkk
   CCD23133.1  29 IHEYRSTELLNKYGIPTAKGIVAFTPDEAFQAAKKLSPSTgLVVKAQALTGGRGKGhfntgykSGIHMIKSAEEAFQVSQEMLGNNLITKQSGSKGKK 126
                  8***********************************965439******************************************************** PP

                  E--EEEEE---ECEEEEEEEEEETTTTEEEEEEESSTTS-HHHHHHH-GGGEEEEEEBTTTB--HHHHHHHHHHCT--CHHHHHHHHHHHHHHHHHHH CS
  ATP-grasp_2  92 vekvlveealdikkElYlsivlDraskkvvviaSseGGvdiEevaakkPekiikvaidpakglkeeqareiakklglekelvkkaakiikklyklfve 189
                  v+ v++ e++++ +E Ylsi++Dr+++ +++iaS++GG++iEe+a++kP+ i+k+++  +  +++e a eiak+lg++++ ++++ak+i++lyklf++
   CCD23133.1 127 VSSVFIVEKCNVLHESYLSILFDRQARLPLIIASRDGGMNIEEIAEEKPDSIKKFHVKEE-IINDELAMEIAKSLGFTHTDLRETAKTIQNLYKLFKD 223
                  *********************************************************865.58999******************************** PP

                  TTEEEEEEEEEE CS
  ATP-grasp_2 190 ldatlvEiNPLv 201
                  +dat++EiNP++
   CCD23133.1 224 KDATQIEINPIS 235
                  **********86 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.1     3e-29   8.8e-26       1     153 []     300     420 ..     300     420 .. 0.98

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 3e-29
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 lvnG++La+++md+ik+               g+++++++d+G++a+          p+++ + ++ ++++++v++i+++i++G+++++ +a++l++a+
  CCD23133.1 300 LVNGAGLAMATMDVIKLY--------------GGDPANFLDCGGGAT----------PETIKKGFELILSNEKVDAIFVNIFGGIVRCDLVAEGLVAAA 374
                 79****************..............***************..........9***************************************** PP

                 HHTT...--S-EEEEEECTTHH.....HHHHHHHTTTSSEEE-SSHHHHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGteadpqelseqakaleeagveiasskaqalraakav 153
                 k+++    ++p++ar++Gt+ d     e++++++e+gv+i s ++ + +a+kav
  CCD23133.1 375 KDLN---LKIPIIARLQGTNLD-----EGRAIIKESGVKIFSFDELDPAAKKAV 420
                 ***8...***************.....*********************999986 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.9e-09   5.6e-06      10     207 ..      29     235 ..      22     254 .. 0.75

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.9e-09
  ATP-grasp_5  10 Lteaeakelleaygipvvetrlassaeeaveaaeeigyp..vvlKivs......pdilhKtdvgGvrlnlkdaeevraaaeeiler.vkeks...pea 95 
                    e+ + ell+ ygip+++ ++a +++ea +aa+++      v+K +       ++  +     G+++ +k+aee  +  +e+l + + +k+   +++
   CCD23133.1  29 IHEYRSTELLNKYGIPTAKGIVAFTPDEAFQAAKKLSPStgLVVKAQAltggrgKGHFNTGYKSGIHM-IKSAEEAFQVSQEMLGNnLITKQsgsKGK 125
                  67999*******************************76623666666543333222334556678888.99999988888888755232222233567 PP

  ATP-grasp_5  96 riegvlVqemakr.ggrElivgvteDpvFGpvilfGlGGtavevlkdvavalpplnstlareliertkaskllkgvrgekkadlaaleellvrlsqLv 192
                  +++ v ++e  ++ ++  l +   +++    +i+   GG+ +e +++ + +     +   +e+i+   a +++k    +   dl++ ++++++l +L 
   CCD23133.1 126 KVSSVFIVEKCNVlHESYLSILFDRQARLPLIIASRDGGMNIEEIAEEKPDSIKKFH-VKEEIINDELAMEIAKSLGFT-HTDLRETAKTIQNLYKLF 221
                  7777776666555588888888888888888888889*********99977766433.345677777777888888777.899999999999999999 PP

  ATP-grasp_5 193 vdlpeIreldinPll 207
                   d +  ++++inP+ 
   CCD23133.1 222 KD-KDATQIEINPIS 235
                  99.889999999985 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   1.6e-06    0.0048       7      74 ..      35     114 ..      31     159 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.6e-06
                 HHHHHHTT--B--EEEESSHHHHHHHHHHHSSSE.EEEEESC-GGGT-EEEE...........SSHHHHHHHHHHHCTS- CS
      GARS_A   7 kdllkkagiptaeyeaftdpeeakeyieeataka.lVvKadglaagKgviva...........kseeealkavkeilekk 74 
                  +ll+k+gipta+  +   p+ea +  ++++  + lVvKa+ l++g+g               ks+eea+++ +e+l ++
  CCD23133.1  35 TELLNKYGIPTAKGIVAFTPDEAFQAAKKLSPSTgLVVKAQALTGGRGKGHFntgyksgihmiKSAEEAFQVSQEMLGNN 114
                 589*********87777777777777777665544*********987532222244444444499999999999988653 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0022       6.5      47      76 ..      30      59 ..      24      76 .. 0.83
   2 ?   -1.2   0.1      0.79   2.3e+03      21      49 ..     219     252 ..     208     253 .. 0.66
   3 ?    1.8   0.0     0.093   2.8e+02      80      98 ..     371     389 ..     366     406 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0022
                S-TTSHHHHHHTTGGGESEEEE-SSSHHHH CS
      TrkA_N 47 gdatdeevLeeagiekadaviaatgddean 76
                +++ ++e+L + gi +a++++a t+d ++ 
  CCD23133.1 30 HEYRSTELLNKYGIPTAKGIVAFTPDEAFQ 59
                567899*******************98654 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.79
                 T....EEEEEEESSH.HHHHHHHHTTSEEEES-T CS
      TrkA_N  21 g....kdvvvidkde.erveelreeglevvvgda 49 
                 +    kd + i+ ++ + +e++++ +++vv+ da
  CCD23133.1 219 KlfkdKDATQIEINPiSEIEKHENGEYDVVCMDA 252
                 2334456888999996667777777799999987 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.093
                 HHHHHHHTSSSEEEEEESS CS
      TrkA_N  80 vllakelnpkkkiiaraqd 98 
                 v++ak+ln k++iiar q 
  CCD23133.1 371 VAAAKDLNLKIPIIARLQG 389
                 7899************875 PP

>> PTS_IIB  PTS system, Lactose/Cellobiose specific IIB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00054       1.6      19      87 ..     216     281 ..     210     284 .. 0.81
   2 ?    0.1   0.1      0.45   1.4e+03      15      69 ..     365     419 ..     363     425 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00054
                 HHHHHHHHCT...EEEEETTEEGGGHHHHHHT-SEEEEEESSGGCTHHHHTTSEEEEECTTHHHCCHCHHHH CS
     PTS_IIB  19 klekaakelg...ieaegeagveleaeeiaddaDlvllapqvrvkdlarfagkpvavinikdalgimdgekv 87 
                 +l k +k+++   ie++  +++  e  e+++ +D+v   + + ++d a+f +   ++++ +d ++++d+++v
  CCD23133.1 216 NLYKLFKDKDatqIEINPISEI--EKHENGE-YDVVCMDAKFGFDDNAEFRQ--HEIYSWRD-ITQEDPNEV 281
                 5667888888856666666666..7777777.*******************9..78999999.889999887 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHCTEEEEETTEEGGGHHHHHHT-SEEEEEESSGG...CTHHHHTTSE CS
     PTS_IIB  15 maaeklekaakelgieaegeagveleaeeiaddaDlvllapqvrv...kdlarfagkp 69 
                 ++ae l  aak+l++++ + a  ++++ ++     +++    v++   ++l+++a+k 
  CCD23133.1 365 LVAEGLVAAAKDLNLKIPIIARLQGTNLDE---GRAIIKESGVKIfsfDELDPAAKKA 419
                 577888899999999998888884444443...5577777777766777777777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2907.73
//
Query:       CCD23134.1  [L=146]
Description: hypothetical protein NDAI_0B01000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-49  165.4   0.2    4.8e-49  165.1   0.2    1.1  1  MPC       Mitochondrial pyruvate carriers


Domain annotation for each model (and alignments):
>> MPC  Mitochondrial pyruvate carriers
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1   0.2   2.7e-53   4.8e-49       2     108 ..      12     118 ..      11     120 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.1 bits;  conditional E-value: 2.7e-53
         MPC   2 lkrflnsetgkktvhFWaPvlkwglviaglsDlkrpaekiSltqnlaLlatgliwtryslvikPkNyllaavnfvlelvglvqvsRilkyrlskkdekk 100
                 +krf+ns+tg+ktvhFWaP+lkw+lviagl+D++rp++++S+tqnl+Llatgl+wtr+s+vi+P+Nylla+vnf+l+ v+++q++Ri+kyrl+++d+k+
  CCD23134.1  12 FKRFWNSQTGPKTVHFWAPTLKWSLVIAGLNDMQRPVDTLSGTQNLSLLATGLVWTRWSFVITPRNYLLASVNFFLAGVAGTQMTRIIKYRLENGDSKM 110
                 99************************************************************************************************* PP

         MPC 101 eakkeike 108
                 ++ ++i +
  CCD23134.1 111 QVLNYIVN 118
                 *9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1036.70
//
Query:       CCD23135.1  [L=798]
Description: hypothetical protein NDAI_0B01010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-12   45.1  58.6    6.9e-12   45.1  58.6    3.0  3  Aim21     Altered inheritance of mitochondria protein 21
  ------ inclusion threshold ------
        1.4    9.0   4.3        3.6    7.8   0.6    2.7  2  DUF2730   Protein of unknown function (DUF2730)


Domain annotation for each model (and alignments):
>> Aim21  Altered inheritance of mitochondria protein 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1  15.7       1.2     1e+04       1     107 [.       7     148 ..       7     203 .. 0.71
   2 !   45.1  58.6   7.7e-16   6.9e-12     300     724 ..     238     672 ..     205     673 .. 0.50
   3 ?   -7.4   5.2         2   1.8e+04     336     367 ..     695     728 ..     686     789 .. 0.41

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 1.2
       Aim21   1 pkvPpRPsrridrSvsPnpdsfapsPLne.......................................slsktssedvpsrppSv.elpslgeegaeye 59 
                 p++P+RP+rr     sP+++s     Lne                                       +   ++ +++p  p+   + +s++ee +++ 
  CCD23135.1   7 PHIPERPRRRK---TSPMQSSLSQEELNEvepslpatgqasvkettpsipsrrpirkaqtiqtignndINTTDVETQIPLLPERRpMKHSVTEEIDNLI 102
                 89*****8777...7999*9*******************999999999999999999998888776654444455557777766669999999999999 PP

       Aim21  60 aleeaeasesstPaqtrnvaedlklhapkPslpsssakarvqavtrtd 107
                 ++++ e +e+++ ++  +v+++   + ++P + + +a ++  +  + +
  CCD23135.1 103 QNTDSELKEMENMLS--SVHAQIPHPPRRPNKNHGTATSNHGHEENIN 148
                 999999999988765..6777777788888777766666655544444 PP

  == domain 2  score: 45.1 bits;  conditional E-value: 7.7e-16
       Aim21 300 yiaseeytsRlsspapqsssvihiDeprhrsepssesgeeeedateergkeepilasDevakesakeepavspsaereesvkyeakereesvpesrees 398
                  ++ +  t  ++ p p+s+ v+                                                                             
  CCD23135.1 238 DQSVD-TTDSVAMPSPESE-VVTT--------------------------------------------------------------------------- 259
                 11111.1222222333333.2222........................................................................... PP

       Aim21 399 kpasieesvpseae..htpledveEyEplfpedeseeavkkateess.................................................rlk 446
                  pas+ ++v++e e  ++++e+ +E  + ++ de++ +vk+  ++s                                                  + k
  CCD23135.1 260 DPASKVKEVVEEHEneNKNEEQLQE--K-VYKDEDDITVKNDIATSGisskaepaitpkiperrptigrvdtpkmesishdnivevihadvkeeglQGK 355
                 2333333333333311111222211..1.2222223333333333224455555555555555555555555555555555555555555555533333 PP

       Aim21 447 rpetekhrfpsedvweds.Psslqltatvstpe..........vakkrafetPeqetarsseelaekeekkllksedkkerpelakqrfpsrdvweDap 534
                   +  + ++ps+d+ +   P+  ++ + +s+++          ++++ +   P +e++++++e + k +       +++e+ ++ k   + ++v+eD  
  CCD23135.1 356 AETETIEAVPSDDATPTIlPKMPERRPAISSTNssakeesifeKKNEGHDIVPHKEEKENKSEMEPKVD----ILSNVPESTPVHKVDNEGEAVSEDID 450
                 223345566666665543255555555555555455555444333333333455555555544444442....22233333333344444444444444 PP

       Aim21 535 esqelettvetpq.......................eevkekspevptKpsiParPeipvrpskksvtsptekkkpPpiPkkpkPqIparpakaseees 610
                 ++ ++ ++ +                          +e++++ +e+ +K ++P+  +  ++  + + +   +k++pPp+Pkkp+++I+a  ++ +++++
  CCD23135.1 451 TDLRTGQEPS--VeepavspskgndellsegkeeeaPEEEAH-TEEAHKQEAPEEEAHNEEKVEPKIPERPKKRAPPPVPKKPSSRIAALHEMLKKQQE 546
                 4433333311..122334444455555555555443222222.223344444443332222222222223338***********************988 PP

       Aim21 611 keesadaavkakPkvparpggskiaal..ragFlkdLnsrLklG......Pqapkkkeekeekgea........eekeepkekapLsdaRkgRarGPar 693
                 ++ ++    ++  k +++ + sk +++  +a F+k+Ln+ ++l+      P + kk ++++++  a        +++e+  +++ + + R+ RarGP+ 
  CCD23135.1 547 ENMAKV--NEPFSKGSEKENDSKDTDNegKAEFVKNLNGLFALPgmapggPILNKKLSPDAASN-AveeqlnlkQAEEAMGDESTGMGTRR-RARGPRG 641
                 884443..44555555555557777654499*************99988877778755555533.33556777677778888888888887.******9 PP

       Aim21 694 RkPAaekvvatekkvvaat.vsivepvsvwki 724
                 Rk+  +k ++tek v +++  +++++++ wki
  CCD23135.1 642 RKL-PSKIAKTEKIVDIKEdENVIQIFNTWKI 672
                 998.4699******9987626789******99 PP

  == domain 3  score: -7.4 bits;  conditional E-value: 2
       Aim21 336 sgeeeedateergkeepilasD..evakesakee 367
                 +g+ee++++ e+  +e i a    e++ +  k +
  CCD23135.1 695 EGQEEHEEEVENDDDEFIDALEikEIESHHGKRH 728
                 3334444444444444333333222222222222 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.6    0.0004       3.6      39      92 ..      64     122 ..      58     124 .. 0.83
   2 ?    1.3   0.2     0.041   3.6e+02      27      71 ..     395     441 ..     386     454 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0004
     DUF2730  39 aekveendkrlteletkvenLPtakdl.....ekLkllladlrgelkaleaevrqlshq 92 
                  +++ +nd   t++et++  LP ++ +     e+++ l+++++ elk++e+ +++++ q
  CCD23135.1  64 IQTIGNNDINTTDVETQIPLLPERRPMkhsvtEEIDNLIQNTDSELKEMENMLSSVHAQ 122
                 48889999999************9988433335799999************99998876 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.041
     DUF2730  27 skYakredleklaekveendkrlteletkve...nLPtakdlekLkll 71 
                 s + k+++ + ++ + ee++++ +e+e kv+   n+P    ++k++ +
  CCD23135.1 395 SIFEKKNEGHDIVPHKEEKENK-SEMEPKVDilsNVPESTPVHKVDNE 441
                 6688999999997777777766.8999999733355777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1682  (0.0938145); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.45
# Mc/sec: 5294.63
//
Query:       CCD23136.1  [L=977]
Description: hypothetical protein NDAI_0B01020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-20   72.0   0.0    5.5e-20   72.0   0.0    2.5  3  ResIII      Type III restriction enzyme, res subunit
    6.3e-19   68.4   1.6    1.3e-17   64.1   0.2    3.3  3  Helicase_C  Helicase conserved C-terminal domain
    1.2e-17   64.3   0.0    5.1e-17   62.2   0.0    2.2  1  DEAD        DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   9.3e-24   5.5e-20       3     169 ..      86     243 ..      84     245 .. 0.86
   2 ?   -3.9   0.7       1.9   1.2e+04     107     115 ..     526     534 ..     488     571 .. 0.47
   3 ?   -2.1   0.8      0.54   3.2e+03      68     121 ..     629     701 ..     602     726 .. 0.45

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 9.3e-24
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekds 101
                 e+r+yQ +++++ l        +++l +++TG+GKT++a  ++ +++ + +  k++f +p++ l+ q +++   ++  + +e+   +++ +k++ e+  
  CCD23136.1  86 EVRDYQFDIVKKSL-------FTNILCAIPTGMGKTFIASTVMLNYFLWTQTGKIIFTAPTRPLVAQQIKACLGITGIPSDETAILLDKSRKNR-EEIW 176
                 56666666666554.......56999***************************************************99988777777777777.7888 PP

                 ..-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT-....--SEEEEEESS- CS
      ResIII 102 tnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekf....keavllglTATp 169
                  nk++++tt q + +d+     ++  l ++ + +++iDEaHr++++ +++++++ +    +++ +l+lTATp
  CCD23136.1 177 ANKRVFFTTPQVVENDL-----KRGVLNPKDIVCLVIDEAHRATGSYAYTNVVKFIdrfnSSYRILALTATP 243
                 9****************.....88999999999************8899999555522235599*******9 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.9
                 EEEEHHHHH CS
      ResIII 107 lvttiqsld 115
                 l  + q+l 
  CCD23136.1 526 LEKEQQKLE 534
                 222222222 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.54
                 HHHHHHG......................GGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH... CS
      ResIII  68 eqtleef......................kkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee 121
                 eq++e++                      +++ +e++k+  ++ ++dk   + ++ ++ +i+   +q++  + +++
  CCD23136.1 629 EQAMENYsnlqklitknfieykksdrilpTSINPECVKKFIEINESDK---EVNNMESDEIIKYATQRMMGKTPKK 701
                 566666644444443222222222222222222222222222222222...2223444444444444444444333 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.56   3.3e+03      50      90 ..     218     255 ..     209     286 .. 0.64
   2 ?    1.0   0.0     0.086   5.1e+02      52      83 ..     432     465 ..     415     485 .. 0.67
   3 !   64.1   0.2   2.2e-21   1.3e-17      40     110 ..     542     611 ..     515     612 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.56
                 STHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEE CS
  Helicase_C  50 lpqnereeileqfnkgesdvLiatdvaerGidipkvnlVin 90 
                     +  + +++fn+ ++++L  t     G d+++v+ V+n
  CCD23136.1 218 YAYTNVVKFIDRFNS-SYRILALTA--TPGSDLDSVQEVVN 255
                 555566677778844.677776664..34555555555553 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.086
                 HHHHHHHHHHHH..TTSSSEEEESGGGTSSSTST CS
  Helicase_C  52 qnereeileqfn..kgesdvLiatdvaerGidip 83 
                 qn r+e ++ f   + +s+v+i t   e  + i 
  CCD23136.1 432 QNIRDELIDFFEngAPDSRVIIFTELRESALEIV 465
                 6666666666663333444666666555555543 PP

  == domain 3  score: 64.1 bits;  conditional E-value: 2.2e-21
                 TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSST CS
  Helicase_C  40 gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRa 110
                 + + a ++g ++q+ ++e++++f++g ++vL++t+++e+G+di +v+l+i +d   ++ + iqr+GRtgR 
  CCD23136.1 542 SSEDAQING-MNQKRQKETIKEFKEGIYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRTGRK 611
                 555577888.************************************************************6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   8.5e-21   5.1e-17      15     174 ..     101     248 ..      88     250 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 8.5e-21
                 CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  15 gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrlddlls 113
                  ++l+a++TG+GKT +++  +l+ ++    +++ k+++ +Ptr L+ q+++ +  ++  i   + +i+ + + r++++++ ++ +++++tp+ + + l+
  CCD23136.1 101 TNILCAIPTGMGKTFIASTVMLNYFLW---TQTGKIIFTAPTRPLVAQQIKACLGITG-IPSDETAILLD-KSRKNREEIWANKRVFFTTPQVVENDLK 194
                 5899*********************87...7777*******************99988.44467666665.555777777799**************** PP

                 CTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 114 tgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 +g ln +++ +lV+DEa+r   +     + + + ++       +++ ++++l+AT+ +d++
  CCD23136.1 195 RGVLNPKDIVCLVIDEAHRATGSYAYTNVVKFIDRF-------NSSYRILALTATPGSDLD 248
                 **********************95555566666666.......56677*******998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1817  (0.101344); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 6588.59
//
Query:       CCD23137.1  [L=507]
Description: hypothetical protein NDAI_0B01030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-14   52.4  21.6    5.4e-09   35.7   3.3    4.8  5  LRR_8     Leucine rich repeat
    4.6e-12   45.8   0.0    8.6e-12   44.9   0.0    1.5  1  CAP_GLY   CAP-Gly domain
    1.6e-10   41.0  37.3    0.00089   19.6   1.5    5.9  8  LRR_4     Leucine Rich repeats (2 copies)
    7.2e-07   28.8  27.0        1.9    8.8   0.1    9.0  9  LRR_6     Leucine Rich repeat
    0.00026   21.1  35.1       0.67   10.7   0.1    9.4  9  LRR_1     Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.36   1.3e+03      23      37 ..     119     133 ..     118     138 .. 0.82
   2 !   17.3   2.1   8.1e-07    0.0029      23      61 .]     149     189 ..     145     189 .. 0.88
   3 !    8.4   0.7   0.00049       1.8      24      59 ..     176     211 ..     173     213 .. 0.63
   4 !   35.7   3.3   1.5e-12   5.4e-09       1      60 [.     226     283 ..     226     284 .. 0.97
   5 !    7.9   0.9   0.00072       2.6       2      36 ..     294     331 ..     293     337 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.36
                 T-TT--EEE--SS-- CS
       LRR_8  23 glsnLkvLdLsnNll 37 
                 ++s+L++ +Ls+ ++
  CCD23137.1 119 DFSSLRHVSLSRSCI 133
                 678999999999877 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 8.1e-07
                 T-TT--EEE--SS---GGGGGG..GTT--S-.EEE--SS-- CS
       LRR_8  23 glsnLkvLdLsnNllttlspga..fsgLpsLrsLdLsgNrL 61 
                 +++n+++LdLs+N+ +++   +  +++L++L+ L+L+gNr+
  CCD23137.1 149 SCNNVETLDLSYNTFSSFKDVVliLECLSKLKTLNLNGNRF 189
                 4799**************98884458*************85 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00049
                 -TT--EEE--SS---GGGGGGGTT-..-S-.EEE--SS CS
       LRR_8  24 lsnLkvLdLsnNllttlspgafsgL..psLrsLdLsgN 59 
                 ls+Lk+L+L+ N  +++s++ ++g+  + L++L +s++
  CCD23137.1 176 LSKLKTLNLNGN--RFISWEGLDGFkiTTLEHLSMSSC 211
                 788888888888..555555555541156777777766 PP

  == domain 4  score: 35.7 bits;  conditional E-value: 1.5e-12
                 TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60 
                 pnL+ Ld+s N l+sl+d++F+  + Lk L+Ls+N+l  + p+++ +  +L++L+Ls+N 
  CCD23137.1 226 PNLKQLDISYNLLESLPDKSFTIPKCLKGLNLSCNQLYNM-PKCLGQW-KLEELNLSHNL 283
                 79**************************************.9******.**********7 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.00072
                 T-SEEE-TTS--..SEE-TTSSTT-TT--EEE--SS.- CS
       LRR_8   2 nLtsLdLsnNrl..tslddeaFkglsnLkvLdLsnN.l 36 
                 +L+ Ld+s+N++  + ++de  k+l +L++L ++ N l
  CCD23137.1 294 TLRDLDISDNKFvdWTICDELNKNLAQLNSLRINGNpL 331
                 69999999999733579999999999999999999933 PP

>> CAP_GLY  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   2.4e-15   8.6e-12       1      64 [.       5      70 ..       5      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 2.4e-15
     CAP_GLY  1 vgdrvklkegrrGvvryvGpvpfakg.ewvGveldep.nGkndGsvkgkrYFeck.pnrGvFvrpek 64
                vgdr +  +++ G++ + G++++ ++ e +G+e+d+p +Gk+ G+v+g+ YF++  p ++ F++  k
  CCD23137.1  5 VGDRLQI-DNELGTILFKGKIKEWPSeEAYGIEWDNPnRGKHSGTVHGESYFKTLiPDSATFIKEPK 70
                7999986.8899*********844432579*******66*************964499999999766 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.26   9.3e+02      20      33 ..     117     131 ..     110     143 .. 0.73
   2 !    9.7   1.1   0.00033       1.2       2      40 ..     122     164 ..     121     173 .. 0.78
   3 !   19.6   1.5   2.5e-07   0.00089       2      38 ..     152     191 ..     151     200 .. 0.82
   4 !   13.8   6.1   1.7e-05      0.06       1      39 [.     201     241 ..     177     246 .. 0.61
   5 !   14.9   3.5   7.3e-06     0.026       1      37 [.     226     263 ..     226     271 .. 0.87
   6 !   10.5   4.2   0.00019      0.67       2      42 ..     251     290 ..     250     293 .. 0.84
   7 !   16.2   2.7     3e-06     0.011       2      36 ..     273     306 ..     272     315 .. 0.87
   8 !    9.7   2.4   0.00031       1.1       3      37 ..     295     333 ..     293     338 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.26
                 HH.-TT--EEE-.-S CS
       LRR_4  20 ek.lpnLkeLdLsgN 33 
                 +k + +L++++Ls+ 
  CCD23137.1 117 NKdFSSLRHVSLSRS 131
                 455888888888764 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00033
                 S--EEE--.SS-.......--E-S-HHH.-TT--EEE-.-S-----GG CS
       LRR_4   2 nLevLdLs.nNq.......ltdipllek.lpnLkeLdLsgNnlitdld 40 
                 +L++++Ls + +       l+di l+++ + n ++LdLs N    +++
  CCD23137.1 122 SLRHVSLSrS-CicktrekLSDIILIKNsCNNVETLDLSYN----TFS 164
                 7999999955.235688889999998877**********99....444 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 2.5e-07
                 S--EEE--SS---E-S-....HHH-TT--EEE-.-S----- CS
       LRR_4   2 nLevLdLsnNqltdipl....leklpnLkeLdLsgNnlitd 38 
                 n e+LdLs N  +++      le l +Lk+L+L+gN +i +
  CCD23137.1 152 NVETLDLSYNTFSSFKDvvliLECLSKLKTLNLNGNRFI-S 191
                 789*****9998887777767778************777.4 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 1.7e-05
                 SS--EEE--SS---.E-S-.HHH.-TT--EEE-.-S-----G CS
       LRR_4   1 pnLevLdLsnNqlt.dipl.lek.lpnLkeLdLsgNnlitdl 39 
                 + Le+L+ s++ l+ d    l + +pnLk+Ld+s N l+++l
  CCD23137.1 201 TTLEHLSMSSCYLSpDNVQlLLQlFPNLKQLDISYN-LLESL 241
                 346666666666666655543366777777777776.77766 PP

  == domain 5  score: 14.9 bits;  conditional E-value: 7.3e-06
                 SS--EEE--SS---E-S-..HHH-TT.--EEE-.-S---- CS
       LRR_4   1 pnLevLdLsnNqltdipl..leklpn.LkeLdLsgNnlit 37 
                 pnL+ Ld+s N l ++p   +  +p+ Lk L+L ++n++ 
  CCD23137.1 226 PNLKQLDISYNLLESLPDksFT-IPKcLKGLNL-SCNQLY 263
                 8*****************8877.8888******.666775 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.00019
                 S--EEE--SS---E-S-HHH-TT--EEE-.-S-----GGGG CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdldeL 42 
                  L+ L+Ls Nql   p + +  +L+eL+Ls+N l + ++++
  CCD23137.1 251 CLKGLNLSCNQLYNMPKCLGQWKLEELNLSHN-LFSEVSSI 290
                 6999****99****9995559********999.77777655 PP

  == domain 7  score: 16.2 bits;  conditional E-value: 3e-06
                 S--EEE--SS---E-S-HHH-TT--EEE-.-S--- CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLkeLdLsgNnli 36 
                 +Le+L+Ls+N  +++++++    L+ Ld+s+N ++
  CCD23137.1 273 KLEELNLSHNLFSEVSSIN-SETLRDLDISDNKFV 306
                 7****************99.899******999544 PP

  == domain 8  score: 9.7 bits;  conditional E-value: 0.00031
                 --EEE--SS---E-S-...HHH.-TT--EEE-.-S---- CS
       LRR_4   3 LevLdLsnNqltdipl...lek.lpnLkeLdLsgNnlit 37 
                 L+ Ld+s+N+  d+     l+k l +L +L ++gN+l t
  CCD23137.1 295 LRDLDISDNKFVDWTIcdeLNKnLAQLNSLRINGNPLFT 333
                 999*******9999998777766999*********5555 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.27   9.6e+02       3      15 ..     121     133 ..     121     135 .. 0.87
   2 !    8.1   0.3   0.00086       3.1       1      15 [.     149     163 ..     149     165 .. 0.88
   3 !    8.8   0.1   0.00052       1.9       3      20 ..     177     195 ..     175     198 .. 0.86
   4 ?    3.1   0.0     0.035   1.3e+02       3      13 ..     201     211 ..     199     216 .. 0.86
   5 ?    4.7   0.0     0.011        38       3      15 ..     226     238 ..     226     240 .. 0.87
   6 ?    3.5   0.1     0.026        94       4      15 ..     251     262 ..     249     262 .. 0.85
   7 !    5.7   0.2    0.0051        18       4      14 ..     273     283 ..     273     286 .. 0.87
   8 !    7.2   0.1    0.0017         6       2      15 ..     292     305 ..     291     307 .. 0.86
   9 ?   -2.1   0.0       1.6   5.8e+03       5      14 ..     321     330 ..     319     333 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.27
       LRR_6   3 thLteLdLsgNdI 15 
                 ++L++++Ls  +I
  CCD23137.1 121 SSLRHVSLSRSCI 133
                 68*******9988 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00086
       LRR_6   1 snthLteLdLsgNdI 15 
                 s++++++LdLs+N +
  CCD23137.1 149 SCNNVETLDLSYNTF 163
                 589**********87 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00052
       LRR_6   3 thLteLdLsgNd.IgDeGa 20 
                 ++L++L+L+gN  I+ eG+
  CCD23137.1 177 SKLKTLNLNGNRfISWEGL 195
                 79**********9988886 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.035
       LRR_6   3 thLteLdLsgN 13 
                 t+L++L++s++
  CCD23137.1 201 TTLEHLSMSSC 211
                 89********9 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.011
       LRR_6   3 thLteLdLsgNdI 15 
                 ++L+ Ld+s+N +
  CCD23137.1 226 PNLKQLDISYNLL 238
                 58*********76 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.026
       LRR_6   4 hLteLdLsgNdI 15 
                 +L+ L+Ls+N++
  CCD23137.1 251 CLKGLNLSCNQL 262
                 5788******96 PP

  == domain 7  score: 5.7 bits;  conditional E-value: 0.0051
       LRR_6   4 hLteLdLsgNd 14 
                 +L+eL+Ls+N 
  CCD23137.1 273 KLEELNLSHNL 283
                 69********6 PP

  == domain 8  score: 7.2 bits;  conditional E-value: 0.0017
       LRR_6   2 nthLteLdLsgNdI 15 
                 + +L+ Ld+s+N++
  CCD23137.1 292 SETLRDLDISDNKF 305
                 679*********85 PP

  == domain 9  score: -2.1 bits;  conditional E-value: 1.6
       LRR_6   5 LteLdLsgNd 14 
                 L +L ++gN 
  CCD23137.1 321 LNSLRINGNP 330
                 88999**997 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.3      0.19   6.8e+02       1      13 [.     122     136 ..     122     151 .. 0.73
   2 ?    3.4   0.1     0.046   1.6e+02       1      13 [.     152     164 ..     152     177 .. 0.78
   3 !    7.5   0.1    0.0021       7.5       1      13 [.     178     190 ..     178     198 .. 0.84
   4 ?    4.8   0.1     0.017        61       2      12 ..     203     213 ..     202     226 .. 0.76
   5 !   10.7   0.1   0.00019      0.67       1      20 [.     227     246 ..     227     251 .. 0.95
   6 ?    0.2   0.3      0.54   1.9e+03       2      12 ..     252     262 ..     251     270 .. 0.79
   7 !    6.8   0.3    0.0037        13       1      12 [.     273     284 ..     273     292 .. 0.81
   8 ?    2.7   0.1     0.083     3e+02       2      12 ..     295     305 ..     294     318 .. 0.79
   9 ?    2.3   0.1      0.11     4e+02       2      14 ..     321     333 ..     320     343 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.19
       LRR_1   1 nLrhLdLsnnpl..l 13 
                 +Lrh  Ls+ ++  +
  CCD23137.1 122 SLRHVSLSRSCIckT 136
                 69*****99998440 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.046
       LRR_1   1 nLrhLdLsnnpll 13 
                 n ++LdLs+n ++
  CCD23137.1 152 NVETLDLSYNTFS 164
                 679*******873 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0021
       LRR_1   1 nLrhLdLsnnpll 13 
                 +L++L+L++n+++
  CCD23137.1 178 KLKTLNLNGNRFI 190
                 7*********984 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.017
       LRR_1   2 LrhLdLsnnpl 12 
                 L+hL +s++ l
  CCD23137.1 203 LEHLSMSSCYL 213
                 9********98 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00019
       LRR_1   1 nLrhLdLsnnpllglppnsf 20 
                 nL+ Ld+s+n l++lp+ sf
  CCD23137.1 227 NLKQLDISYNLLESLPDKSF 246
                 8****************998 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 0.54
       LRR_1   2 LrhLdLsnnpl 12 
                 L+ L+Ls n+l
  CCD23137.1 252 LKGLNLSCNQL 262
                 788******97 PP

  == domain 7  score: 6.8 bits;  conditional E-value: 0.0037
       LRR_1   1 nLrhLdLsnnpl 12 
                 +L++L+Ls+n +
  CCD23137.1 273 KLEELNLSHNLF 284
                 7*********87 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.083
       LRR_1   2 LrhLdLsnnpl 12 
                 Lr Ld+s+n +
  CCD23137.1 295 LRDLDISDNKF 305
                 999******97 PP

  == domain 9  score: 2.3 bits;  conditional E-value: 0.11
       LRR_1   2 LrhLdLsnnpllg 14 
                 L +L +++npl+ 
  CCD23137.1 321 LNSLRINGNPLFT 333
                 7799******964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3710.47
//
Query:       CCD23138.1  [L=228]
Description: hypothetical protein NDAI_0B01040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.3e-21   73.6   0.4    1.4e-20   73.0   0.4    1.3  1  Nas2_N      Nas2 N_terminal domain
    0.00021   21.6   0.0    0.00038   20.8   0.0    1.4  1  GRASP55_65  GRASP55/65 PDZ-like domain
    0.00026   21.3   0.2    0.00046   20.5   0.2    1.4  1  PDZ         PDZ domain
     0.0028   17.5   0.4     0.0047   16.7   0.4    1.4  1  PDZ_6       PDZ domain
  ------ inclusion threshold ------
       0.04   14.3   0.1      0.078   13.3   0.1    1.5  1  PDZ_2       PDZ domain


Domain annotation for each model (and alignments):
>> Nas2_N  Nas2 N_terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.4   3.9e-24   1.4e-20       2      79 .]      40     117 ..      39     117 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 3.9e-24
      Nas2_N   2 keLekkkdeiekeieelsevLesqnvgmdgplvDeegFPrsDidvvavrtaRnriiclqNDlkelmkeieealaelha 79 
                 +e++  k ++e e+++  e L+s++ +++++l++ +g+PrsDidv+++  aR+++++l+NDl+++ ++ +e l+++++
  CCD23138.1  40 SEIQVLKGKVETELSKNLELLSSEGTDLHSSLITPDGYPRSDIDVLQITMARRNVNMLRNDLHKIIERSHELLNQHFQ 117
                 67888999********************************************************************97 PP

>> GRASP55_65  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.1e-07   0.00038      49     127 ..     146     225 ..     136     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.1e-07
                 EEBTTSHHHHHT--TTTEEEE.E.EE.SSSSSTSCSHHHHTTTSSS-EEEEEEETTTTEEEEEEE---TTSSSSTTTSEEE CS
  GRASP55_65  49 dvlegsPaakagLvpksDYii.G.ldkgllkgeedlselveaheekelkLlvYnsesdevrevtvkpsrewGgegalGcdv 127
                 ++ +gsP ++ag+++    i+ G ++ g  +  ++++++v + e++ + L +   e+d + +  ++psr+w g+++lGc+v
  CCD23138.1 146 EIVSGSPIQQAGVQNGDKLILiGdINAGNHNRLQNIQRVVLQSEDRRIPLKI-SRENDGILDLWLVPSRNWSGRSLLGCKV 225
                 4779*********998888752435558888999****************99.5677778888888*************98 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   1.3e-07   0.00046      25      81 ..     139     197 ..     124     198 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.3e-07
                 SSSEEEEEECTTSHHHHHTSSTTEEEEEETTEETTTSHHHHHHHHHHTTTS..EEEEEE CS
         PDZ  25 dkgifvsevlpggaaeadglkvGDkIlsvNgvdvenvsheeavqaikgskg..kvtLti 81 
                  + ++  e++ g++ +++g++ GDk++ +++ +  n++ ++++q +   ++   ++L+i
  CCD23138.1 139 IPFAVFDEIVSGSPIQQAGVQNGDKLILIGDINAGNHNRLQNIQRVVLQSEdrRIPLKI 197
                 56778889*****************************9999999877666657777766 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4   1.3e-06    0.0047       4      56 .]     146     199 ..     143     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.3e-06
       PDZ_6   4 aVdpgsPAdrAGlrvGDiilsvNGqp.veglsladvaallrgsagesvvlvvrr 56 
                 +++ gsP  +AG++ GD ++ +++++  ++  l+ +++ + +s+++++ l++ r
  CCD23138.1 146 EIVSGSPIQQAGVQNGDKLILIGDINaGNHNRLQNIQRVVLQSEDRRIPLKISR 199
                 6788**********************7788888899999999***999999866 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.2e-05     0.078      20      73 ..     146     201 ..     134     204 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.2e-05
                 EE-TTSGGGGT.--TT-EEEEETTB--..SSHHHHHHHHHTS-TT-EEEEEEEETT CS
       PDZ_2  20 sVkeggPaakaglkagDvilkvdgkkv..ksledlislllkkkpGdtVkltvlRdg 73 
                 ++ +g+P ++ag++ gD+++ +++     +++ + i+++  +++++ + l+++R++
  CCD23138.1 146 EIVSGSPIQQAGVQNGDKLILIGDINAgnHNRLQNIQRVVLQSEDRRIPLKISREN 201
                 4889*********************9944444444477778889999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1796.74
//
Query:       CCD23139.1  [L=480]
Description: hypothetical protein NDAI_0B01050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-45  155.0   2.3    1.8e-44  152.0   0.3    2.9  2  Gti1_Pac2  Gti1/Pac2 family


Domain annotation for each model (and alignments):
>> Gti1_Pac2  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   0.3     1e-48   1.8e-44       1     181 []       6     175 ..       6     175 .. 0.81
   2 ?    0.2   0.1     0.038   6.8e+02     130     134 ..     323     327 ..     210     450 .. 0.62

  Alignments for each domain:
  == domain 1  score: 152.0 bits;  conditional E-value: 1e-48
                 SEES---SHHHHHHHHHHHHTTSS---SS---HHHHHHHSSTTEEEEEEHHHH--SS---S--B---EEETTEEEEEB--------------------- CS
   Gti1_Pac2   1 tfkgyiettkdalllieavlegilkrvtrRlkekErkeliksGsvFvfeeeesgikRWTDGvsWSpSrilgnfLvYreldkkrakkkkkkkkkkskest 99 
                 tf+g i+++ da+lli+avl+g+l++v rR+++ Er++li+ G+vFvf+ee sgikRWTDG++WSpSri+g+fL+Y+el+++ ++  +++     + ++
  CCD23139.1   6 TFRGLIDDEFDAALLIQAVLDGKLQHVLRRPSDFERQSLIVPGNVFVFIEEMSGIKRWTDGINWSPSRISGKFLIYKELNRDYPSLISSSGPIPPRVNM 104
                 8*********************************************************************************99999988777766655 PP

                 ----------.................----------------------------------EEEEEEEEEETTT.......EEEEEEE- CS
   Gti1_Pac2 100 kkeesksekasssssesseakessssseskasksskslekdserslvgsltdsykfkkdgLvKkTisvtlkgke.......lhlisYyk 181
                 ++ +s +      ++ +  ++++ + +     +++          ++++ + +y+  ++g+vKkT+s++l + +       +h+isYy+
  CCD23139.1 105 PNFQSPK------NNVN--TDMNIHLN-----NNR-----VPYAMYSQESMANYPSIHTGFVKKTFSIKLPTGTnnqvyhnIHIISYYN 175
                 4443322......1111..12222222.....122.....22333444777889999************887777899**********6 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.038
                 ----- CS
   Gti1_Pac2 130 askss 134
                  ++++
  CCD23139.1 323 ITTAA 327
                 11111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      245  (0.013665); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3666.99
//
Query:       CCD23140.1  [L=394]
Description: hypothetical protein NDAI_0B01060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-69  229.7   3.2    5.7e-23   80.6   0.1    3.1  3  Mito_carr        Mitochondrial carrier protein
  ------ inclusion threshold ------
       0.11   11.6   0.5        1.6    7.8   0.0    2.8  3  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.1   6.4e-27   5.7e-23       9      95 ..     103     190 ..      99     191 .. 0.93
   2 !   77.8   0.0   4.9e-26   4.4e-22       4      94 ..     196     286 ..     194     289 .. 0.94
   3 !   70.6   0.1   8.8e-24   7.9e-20       7      94 ..     300     386 ..     294     389 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 6.4e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqtqkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                  l+G+lag ++++ ++Pldv Ktrlq+q+ ++ ++ +++ +l ++++i+k+eG++gly+G++p +++++p++ ++f++ye  k+++ k
  CCD23140.1 103 ALSGALAGFLSGVTVCPLDVTKTRLQAQGIEGIENPYYRgLLGTMSTIVKDEGVKGLYKGIVPIIMGYFPTWTIYFSVYEISKDMYSK 190
                 689***************************9866655556********************************************9976 PP

  == domain 2  score: 77.8 bits;  conditional E-value: 4.9e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++l++ +++ +aga++t++t+P++vvKtrl++q  ++k+ ++++ ++d+++ki+++eG+r ly Gl+p+l++     a+ f +ye+lkr l 
  CCD23140.1 196 EFLSHSCSAITAGAASTILTNPIWVVKTRLMLQTPMAKHPTYYSgTIDAFRKIIRQEGIRTLYTGLVPSLFGLL-HVAIHFPVYEKLKRKLH 286
                 5788999*****************************999888778***************************99.9************9885 PP

  == domain 3  score: 70.6 bits;  conditional E-value: 8.8e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 + ++a+++++++a+++t+P ++++tr+q++ ks + ++++ ++  +kk++ +eG++g+y+G+  nl+r++pasa+++v++e+++++l 
  CCD23140.1 300 RLIIASSVSKMIASSITYPHEILRTRMQIKLKSPNPTQRK-LFTLIKKTFVQEGIMGFYSGFATNLIRTVPASAITLVSFEYFRNTLI 386
                 66899****************************9998876.*******************************************9886 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1     0.082   7.3e+02      23      45 ..     119     142 ..      98     181 .. 0.56
   2 ?    7.8   0.0   0.00018       1.6     151     209 ..     176     233 ..     173     252 .. 0.84
   3 ?    0.1   0.0      0.04   3.6e+02     177     194 ..     302     319 ..     244     372 .. 0.48

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.082
  Serine_protease  23 PfkalLtnlqkdg.svlpsaysgG 45 
                      P+ ++ t+lq +g  ++++ y  G
       CCD23140.1 119 PLDVTKTRLQAQGiEGIENPYYRG 142
                      444444555554444444444444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00018
  Serine_protease 151 vnFaalgvvedeiakflkindelynkllaGalsGviAtvlttifnsykDkkllaskven 209
                      + F++  +  d  +k l++  e+  + ++  ++G+  t+lt ++   k + +l++ + +
       CCD23140.1 176 IYFSVYEISKDMYSKLLPYS-EFLSHSCSAITAGAASTILTNPIWVVKTRLMLQTPMAK 233
                      56888888899999999986.7999*****************************99866 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.04
  Serine_protease 177 llaGalsGviAtvlttif 194
                      ++a  +s +iA+ +t++ 
       CCD23140.1 302 IIASSVSKMIASSITYPH 319
                      222233333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2735.61
//
Query:       CCD23141.1  [L=695]
Description: hypothetical protein NDAI_0B01070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-27   93.9   1.1    1.1e-21   76.7   0.0    4.4  4  Thioredoxin    Thioredoxin
    0.00021   21.3   5.5    0.00092   19.2   0.3    3.5  3  Thioredoxin_6  Thioredoxin-like domain
     0.0029   18.1   0.2       0.32   11.5   0.0    2.9  2  Thioredoxin_2  Thioredoxin-like domain
  ------ inclusion threshold ------
      0.014   15.6   1.3      0.034   14.4   1.3    1.6  1  MCM6_C         MCM6 C-terminal winged-helix domain


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0   2.6e-25   1.1e-21       4     102 ..      38     139 ..      35     140 .. 0.96
   2 !    5.4   0.1    0.0039        17      29      69 ..     198     239 ..     157     253 .. 0.89
   3 ?   -1.6   0.0      0.58   2.6e+03      71      91 ..     350     370 ..     344     381 .. 0.77
   4 !    7.1   0.0    0.0012       5.4      68      88 ..     398     418 ..     367     439 .. 0.73

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 2.6e-25
                  ESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.....TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHH CS
  Thioredoxin   4 vltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd.....kvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekek 96 
                   lt ++F++e+++   l++veF++p+C hCk+laP +ek++e +++     +++l +v++ e  dl++k ++e++P +kl+  +  +k+y+gar++e+
   CCD23141.1  38 PLTGSTFDNEMKN--GLHIVEFFSPYCHHCKSLAPIWEKTWESFHEegsklNITLSQVNCVEDGDLCSKENIEYFPYIKLYGPSGFIKNYDGARKEEA 133
                  68999******99..******************************99*************************************************** PP

                  HHHHHH CS
  Thioredoxin  97 laaflk 102
                  +++f +
   CCD23141.1 134 FIKFAR 139
                  999976 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0039
                  TSHHHHCHHHHHHHHHHHCTT.TSEEEEEETTTSHHHHHHTT CS
  Thioredoxin  29 wCghCkalaPeleklaeelkd.kvklakvdvdenedlakkye 69 
                   C+ C  ++  ++ l+++l +  v   +++++en+ ++++++
   CCD23141.1 198 NCADCTTFQRAWKMLSKNLLAdGVLTGHMNCEENPLICNELG 239
                  6***************998766999**********9999875 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.58
                  SSSSEEEEEETTEEEEEEESS CS
  Thioredoxin  71 egiPtlklfkngkevkkyega 91 
                  + iP+l+l+k+ +  k+++ +
   CCD23141.1 350 SKIPNLYLYKSKEDLKSLTHT 370
                  679*******99987776655 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0012
                  TT-SSSSEEEEEETTEEEEEE CS
  Thioredoxin  68 yevegiPtlklfkngkevkky 88 
                    ++++Pt+ lfk+g+++ ++
   CCD23141.1 398 NTITQFPTFFLFKDGDKIPHV 418
                  3699***********955433 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.062   2.8e+02      23      76 ..      91     143 ..      74     155 .. 0.80
   2 ?    2.8   0.7     0.021        96      40     100 ..     351     408 ..     328     409 .. 0.78
   3 !   19.2   0.3     2e-07   0.00092      37      94 ..     399     460 ..     389     488 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.062
                    SEEEEE--HHHHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHHHH-- CS
  Thioredoxin_6  23 vrfgvtkskevadklgvke.pavllfrkfdeekvkydgekitvddlkkfieknsl 76 
                     ++ ++ ++++++k ++++ p ++l+ + +  +  ydg+  + +   kf +k+ l
     CCD23141.1  91 SQVNCVEDGDLCSKENIEYfPYIKLYGP-SGFIKNYDGA-RKEEAFIKFARKEAL 143
                    566678999*****************99.8889999998.688888888888766 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.021
                    -SSEEEEEETTTTEEEEEETHT--HHHHHHHHHHH---SEEE-SHHHHHHHHTSS--EEEE CS
  Thioredoxin_6  40 kepavllfrkfdeekvkydgekitvddlkkfieknslplvreltpenaeelfeeglpplll 100
                    k p+++l++ +++   ++++  ++++++ k i+ n  ++  +l+++++   + ++ p+++l
     CCD23141.1 351 KIPNLYLYKSKEDL-KSLTH--TSFEEMYKMINYNETEPEKVLDENQFALNTITQFPTFFL 408
                    559******97775.34444..89**************99999999988777777775554 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 2e-07
                    TT--SSEEEEEETTTTEEEEEETH....T--HHHHHHHHHHH---SEEE-SHHHHHHHHTSS CS
  Thioredoxin_6  37 lgvkepavllfrkfdeekvkydge....kitvddlkkfieknslplvreltpenaeelfeeg 94 
                    + +++p+  lf++ d+ +  ++g     + +v+ +++++++  +p+++e++++n+ +l++++
     CCD23141.1 399 TITQFPTFFLFKDGDKIPHVFPGYstteMRNVETIMNWVKEFAIPMITEVNEDNFWDLMNSQ 460
                    55677******************9999999****************************9987 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.022     1e+02       9     107 ..      54     136 ..      47     138 .. 0.77
   2 !   11.5   0.0   7.2e-05      0.32      36     102 ..     367     425 ..     350     430 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.022
  Thioredoxin_2   9 lvvftdpdCpyCkklkkelkel.ddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarlpGyvpae 103
                    +v f +p C  Ck l    ++  +++++       +++ ++   ++ c ++            +l  k +++ +P+i ++ ++  + ++ G+ ++e
     CCD23141.1  54 IVEFFSPYCHHCKSLAPIWEKTwESFHEE------GSKLNITLSQVNCVEDG-----------DLCSKENIEYFPYIKLYGPSGFIKNYDGARKEE 132
                    56688899999999988444443666666......88888888888888887...........499999999999999998888888999988888 PP

  Thioredoxin_2 104 elea 107
                     + +
     CCD23141.1 133 AFIK 136
                    8765 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.2e-05
  Thioredoxin_2  36 rvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlpGyvpa 102
                           + sfe+ + +i +++ ++   +++ +++++a    ++ +Pt++ f dg++i  + pGy + 
     CCD23141.1 367 L-----THTSFEEMYKMINYNETEP---EKVLDENQFALN-TITQFPTFFlFKDGDKIPHVFPGYSTT 425
                    3.....5666666666666666665...447889999999.9******77699************765 PP

>> MCM6_C  MCM6 C-terminal winged-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.3   7.6e-06     0.034       6      72 ..     460     536 ..     457     538 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.6e-06
      MCM6_C   6 tyekYveianllvlklreeee........eeee....egiekeeLvewYleqieeeleseeeleeekklvekvlkrLvk 72 
                 ++e+Y  ia ll+   r +e+        +  +    e ++ +++ +w + +++++le +++l+++k+   k++  L k
  CCD23141.1 460 QHERYSDIAILLIDSARMKESvnsvnnlvT--GnydyEHVRMSQMFQWIMGERNDKLEYVQKLKNKKAQSAKIVAALRK 536
                 589******************666655551..055669**********************************9988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 5042.05
//
Query:       CCD23142.1  [L=142]
Description: hypothetical protein NDAI_0B01080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      9e-08   32.1   0.5    1.1e-07   31.8   0.5    1.0  1  Use1           Membrane fusion protein Use1
  ------ inclusion threshold ------
       0.19   11.7   3.0       0.23   11.4   0.9    1.9  2  Sec20          Sec20


Domain annotation for each model (and alignments):
>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.5   1.2e-11   1.1e-07     117     238 ..      12     137 ..       6     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 1.2e-11
        Use1 117 yqkelrkellgkndsssspekekeskkk....ksdedldavlkkhenlqEklaeemlsLarnLKenslaasqiikkDtetlsksekaadqnlaslkkes 211
                 ++  +r++l+g++  + ++e+ k+s++      +d + d +  + e+  E+    m +  r+LK+ sl +++ i+  ++tl++     d+   +lk+  
  CCD23142.1  12 QRDSKRTRLFGSSM-NFEDETGKRSSPYqsstHLDYSQDRL-AQLESQSEEQVGIMAEKLRSLKTLSLKMGDEIRGSNKTLDQLGDSFDTTSLKLKNTF 108
                 55668899999888.55666666666664554333333333.333333444455677777**************************************9 PP

        Use1 212 erleeh.skskvkcllwlllfv.vlvvFi 238
                 + ++e  ++s+++  +wll+f+ v++vF+
  CCD23142.1 109 SNMMEMaKRSRISIKTWLLIFAlVILVFF 137
                 9999976************9852677777 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2     0.069   6.2e+02      12      39 ..      46      73 ..      35      79 .. 0.53
   2 ?   11.4   0.9   2.6e-05      0.23      29      87 ..      81     139 ..      65     142 .] 0.78

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.069
       Sec20 12 aisqllsqevqqSeenleeldastksle 39
                 ++  l+q   qSee +  + ++ +sl+
  CCD23142.1 46 YSQDRLAQLESQSEEQVGIMAEKLRSLK 73
                3444444555555555555555554444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 2.6e-05
       Sec20  29 eeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglflacvvyv 87 
                 +e++ s k+l +l + +  ++  l+ +   +  + +r+++     +l ++l +++ ++v
  CCD23142.1  81 DEIRGSNKTLDQLGDSFDTTSLKLKNTFSNMMEMAKRSRISIKTWLLIFALVILVFFWV 139
                 78999999*************99999988888888888777666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1163  (0.064867); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1058.72
//
Query:       CCD23143.1  [L=950]
Description: hypothetical protein NDAI_0B01090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-45  154.8   0.9    4.8e-45  154.2   0.2    1.6  2  Syja_N         SacI homology domain
    2.4e-11   43.6   0.0    3.6e-11   43.0   0.0    1.3  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Syja_N  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   0.2   5.4e-49   4.8e-45       2     298 ..      70     366 ..      69     407 .. 0.82
   2 ?   -2.6   0.0      0.29   2.6e+03      61     103 ..     452     515 ..     404     546 .. 0.60

  Alignments for each domain:
  == domain 1  score: 154.2 bits;  conditional E-value: 5.4e-49
      Syja_N   2 gilGlirllsgsyllvitkreevgtlk.........gkkeiykitevellplsseeeaekalkslkaktekkkeekeleekllklleklfessgsfYFs 91 
                 g+lGli+ + + +l++i++ ++vg  +          +++iyk+ +v+++++++   a + l  ++   ++++ +k  +e+ +  ++klf  +g+fYFs
  CCD23143.1  70 GLLGLISTNGSVFLAIISGVQNVGFPRwknegsrvvPNETIYKVLDVDFYSIEND--AYDPLFFER---NEQNYDKLIHEHPCGSFKKLF-GDGTFYFS 162
                 99*****9999************99667899*****556************9544..555555422...233333334555566667788.69****** PP

      Syja_N  92 ydlDltrslqrqlekssesskslplweraderFvWNrhllkpli........ea....eldswllpviqGfveqsklklsksqkekekkevtltlisRr 178
                  d+D++++++++   +  + ++  ++++ d  F+WN +l++++i        e+    + +++l+ v++Gf++++ +++        ++++++t+isR 
  CCD23143.1 163 RDFDISNTVKNHGLLH--NLEY--TIDNQDLGFIWNTSLTSEIIswrnrvpiEKrhlfDNSNFLTFVVRGFCKTAVVEDG-------DNTASVTIISRI 250
                 **********999874..3333..36778999**********997876666611577889************77776543.......47799******* PP

      Syja_N 179 srkraGtRylrRGiddeGnvANfvEtEqilevessekeskilSfvqiRGSiPlfWsqeptlk.ykpkirierseeenleafkkHfekllkrYgkvvvvn 276
                 s +++ +  ++ G++deG+v  fvEtE ++ +     ++ i+S++q+   iPlfW++  ++  y  ki+++r+ +++++af+kHf+++ ++Yg v +vn
  CCD23143.1 251 SAENK-LNAFEDGLNDEGKVGCFVETEVVVTT-----KKFIFSYTQVEANIPLFWESVENQLlYGRKIKMTRTPDQSQTAFDKHFDSMESKYGVVSIVN 343
                 *9977.666778*******************4.....468***************997765526*********************************** PP

      Syja_N 277 Llekk.grEkkLgeayekavkkl 298
                 L++ k ++++ L   y+k++++ 
  CCD23143.1 344 LIKPKsETQESLALVYQKCAEAR 366
                 **655488**********98765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.29
      Syja_N  61 t......................ekkkeekeleekllklleklfessgsfYFsydlDltrslqrq 103
                 +                      + +k+ k+   k+ k++ klf+s+ ++++  ++ +++ l + 
  CCD23143.1 452 EitslfidahdriwsenyywldrTYSKNGKN-PMKYAKIYYKLFSSKVKLFYPLHYYVSQHLRQM 515
                 0333344445555555555555322333333.556778888889888899997666777777544 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0     4e-15   3.6e-11       1     233 []     530     810 ..     530     810 .. 0.80

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 4e-15
                    EEEEESTGCHHHHTHHHHHHHHHHHHHHC.....TT...SEEEEEEEBSCTCHHHHHHHHH.......TTCEEEEECCH................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xx...xxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxx................. RF
  Exo_endo_phos   1 ltwNvngqaspalgssrrsdrladlltay.....da...DvlgLQEvdddelsriplllal.......ggflgasstsp................. 64 
                    +t+N++g+         ++d++ +++        ++   +++gL E       +++l+  +                 +                 
     CCD23143.1 530 GTFNISGK--------VSKDDITEWIFPKgsnleNPasiYIIGLEE-------VVELTPGHmlstdpfI---------Kqfwerkiitllnnsggk 601
                    69*****7........55999*****6667766644899*******.......8888885444455550.........344555555555555566 PP

                    .....................................ECSSSTTSSEEEEEECSTE.EEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHHGH CS
                    .....................................xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  65 .....................................tgggggggnggavlsrfpl.tslfrrtfiefndlvaalrreplaakleqlniashrdhd 122
                                                         tg+gg   n+gav+++f    ++f+  +++     + ++++ +++k  ++ni       
     CCD23143.1 602 ekyvctwsnqlgglllmlfmssseylkikhiegdvkkTGFGGIASNKGAVAVSFNYsATKFCVLVSHLAAGLDNVEQRHNDYKTIVKNI------- 690
                    66666666667**********************************************77778777777777777777777777777775....... PP

                    HHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCETTTTTTTTTTTEB-B................... CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................... RF
  Exo_endo_phos 123 lvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapapvglyllgggptptyvtraggsrl................... 199
                                ++  l    ++ vi++GDfN+                                          r+                   
     CCD23143.1 691 -----------NFGRGLRIKDHDAVIWMGDFNY------------------------------------------RIlmsnedvrrliaskeytnl 733
                    ...........4444444445555777******..........................................999999999999999999999 PP

                    ...................................................EEEEEECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    ...................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 200 ...................................................DrilaspalalfrsgvlppplalvrrealtlSDH 233
                                                                       Dril +        g+++++l++  +e++ +SDH
     CCD23143.1 734 flkdqlnqqmiagesfpyyhemaidfpptykfdpgtktydtsekmripawtDRILSR--------GEVLKQLSYGCAEDILFSDH 810
                    99999999999999999999999999999999999999999999999**********........77777776655589****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 6631.07
//
Query:       CCD23144.1  [L=87]
Description: hypothetical protein NDAI_0B01100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-05   22.2   3.7     0.0002   21.1   3.7    1.5  1  HSBP1        Heat shock factor binding protein 1
    0.00031   20.8   1.1    0.00034   20.7   1.1    1.1  1  Laminin_II   Laminin Domain II
      0.002   18.7   2.5      0.002   18.7   2.5    1.2  1  APG6_N       Apg6 coiled-coil region
     0.0043   17.5   1.7     0.0049   17.3   1.7    1.2  1  Spectrin     Spectrin repeat
  ------ inclusion threshold ------
       0.02   15.2   0.1      0.023   15.0   0.1    1.1  1  Chlamy_scaf  Chlamydia-phage Chp2 scaffold (Chlamy_scaf)
      0.025   14.5   1.9      0.035   14.0   1.9    1.3  1  Prefoldin    Prefoldin subunit
      0.031   14.7   1.8      0.059   13.8   1.8    1.5  1  FlaC_arch    Flagella accessory protein C (FlaC)
      0.041   14.2   0.2      0.051   13.8   0.2    1.2  1  DUF948       Bacterial protein of unknown function (DUF948)
      0.056   12.8   1.6      0.053   12.9   1.6    1.1  1  Helo_like_N  Fungal N-terminal domain of STAND proteins
      0.078   12.8   1.7       0.14   12.0   1.7    1.4  1  DASH_Dam1    DASH complex subunit Dam1
      0.085   13.1   2.3       0.12   12.6   2.3    1.3  1  XhlA         Haemolysin XhlA
      0.095   12.9   5.1       0.13   12.5   5.1    1.2  1  Spc24        Spc24 subunit of Ndc80


Domain annotation for each model (and alignments):
>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   3.7   1.4e-07    0.0002      29      49 ..      47      67 ..      45      69 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.4e-07
       HSBP1 29 iDdMssriDdLEksiadlmtq 49
                +Dd+++r+D++Ek+++dl +q
  CCD23144.1 47 MDDLEKRLDNMEKNMNDLLQQ 67
                9*****************999 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   1.1   2.3e-07   0.00034      43      86 ..      36      79 ..      14      85 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.3e-07
                XXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH.. CS
  Laminin_II 43 tnekvkdankairdArrsvkkLeklapqLldklkelkqleeass 86
                  ++v+d  ka++d ++   ++ek++++Ll++l++l+  +++s+
  CCD23144.1 36 ALDLVNDGEKAMDDLEKRLDNMEKNMNDLLQQLEKLEDENKPSA 79
                567899*******************************9998865 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   2.5   1.3e-06     0.002      45      86 ..      43      84 ..       3      87 .] 0.77

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.3e-06
      APG6_N 45 qdeeleeleeeleklekeeeelleeLkelekereeleaelaa 86
                 ++ +++le++l+++ek  ++ll++L++le+e++  +++ +a
  CCD23144.1 43 GEKAMDDLEKRLDNMEKNMNDLLQQLEKLEDENKPSASKEEA 84
                5678999*************************9876665555 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.7   3.3e-06    0.0049      24      78 ..      28      83 ..       7      87 .] 0.66

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.3e-06
                HCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.HTTHHHH CS
    Spectrin 24 lssedlgkdleevqallkkhkaleaelaaqqervkalnelaeklldeg.hsaseei 78
                l+ + +   l+ v + +k++++le+ l+++++++++l ++ ekl+de+ +sas+e 
  CCD23144.1 28 LTPTTFKDALDLVNDGEKAMDDLEKRLDNMEKNMNDLLQQLEKLEDENkPSASKEE 83
                333444444555555566**************************666625555544 PP

>> Chlamy_scaf  Chlamydia-phage Chp2 scaffold (Chlamy_scaf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   1.6e-05     0.023      34      74 ..      30      70 ..      19      84 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.6e-05
  Chlamy_scaf 34 ildyqdaleivakaeeafdelPanirkrfanPmellsfled 74
                 +  ++dal++v  +e+a+d+l  ++     n  +ll+ le 
   CCD23144.1 30 PTTFKDALDLVNDGEKAMDDLEKRLDNMEKNMNDLLQQLEK 70
                 678*******************9998888888888888875 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.9   2.3e-05     0.035      76     106 ..      44      74 ..      39      85 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  76 eeAiellkkkleelekqlekleeeleklkdq 106
                 e+A++ l+k+l+++ek++ +l ++lekl d+
  CCD23144.1  44 EKAMDDLEKRLDNMEKNMNDLLQQLEKLEDE 74 
                 899************************9986 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.8   3.9e-05     0.059       6      35 ..      44      73 ..      40      77 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-05
   FlaC_arch  6 Enklsklsteletvkkeneelsksveelke 35
                E+ +++l+ +l++++k++++l +++e+l++
  CCD23144.1 44 EKAMDDLEKRLDNMEKNMNDLLQQLEKLED 73
                777888888888888888888888888876 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.2   3.4e-05     0.051      28      60 ..      40      71 ..      28      82 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.4e-05
      DUF948 28 ldeaaatieelekqvdpilkevedllakvnell 60
                ++  ++++++lek++d++ k+++dll++ ++ l
  CCD23144.1 40 VNDGEKAMDDLEKRLDNMEKNMNDLLQQLEK-L 71
                4444555555555555555555555555555.2 PP

>> Helo_like_N  Fungal N-terminal domain of STAND proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.6   3.5e-05     0.053     156     198 ..      44      84 ..       7      87 .] 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.5e-05
  Helo_like_N 156 edttsdLeehLedideklealtekseeaseedeaelqrlkeEr 198
                  e++ +dLe++L+++++ +++l ++ e+ ++e++ + +  keE 
   CCD23144.1  44 EKAMDDLEKRLDNMEKNMNDLLQQLEKLEDENKPSAS--KEEA 84 
                  35789*****************998888777766665..4443 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.7   9.5e-05      0.14       3      36 ..      45      78 ..      44      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.5e-05
   DASH_Dam1  3 pafaeLaDsletLdknledLqqihesLsdfNeSF 36
                +a+ +L++ l++++kn++dL q  e+L+d N+  
  CCD23144.1 45 KAMDDLEKRLDNMEKNMNDLLQQLEKLEDENKPS 78
                7899******************999999988765 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.3     8e-05      0.12      17      49 ..      44      76 ..      31      77 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8e-05
        XhlA 17 eervdkleekaaeaeekiknleedlkklesnqk 49
                e+ +d+le++ +++e++   l  +l+kle+ +k
  CCD23144.1 44 EKAMDDLEKRLDNMEKNMNDLLQQLEKLEDENK 76
                336677777777777777777777777777665 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.1   8.6e-05      0.13      10      45 ..      44      79 ..      38      87 .] 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.6e-05
       Spc24 10 akelsdleselesleselaelkeeleeleeeseeke 45
                 k+++dle+ l+++e++ ++l ++le+le+e++ ++
  CCD23144.1 44 EKAMDDLEKRLDNMEKNMNDLLQQLEKLEDENKPSA 79
                5899*************************9988732 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2195  (0.122427); expected 358.6 (0.02)
Passed bias filter:                     1054  (0.0587874); expected 358.6 (0.02)
Passed Vit filter:                       191  (0.0106531); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 663.97
//
Query:       CCD23145.1  [L=218]
Description: hypothetical protein NDAI_0B01110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-05   23.7   4.3    4.5e-05   23.4   4.3    1.2  1  DUF4588   Domain of unknown function (DUF4588)
     0.0022   17.7   0.6     0.0043   16.8   0.6    1.5  1  DUF713    Protein of unknown function (DUF713)


Domain annotation for each model (and alignments):
>> DUF4588  Domain of unknown function (DUF4588)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   4.3     5e-09   4.5e-05      59     195 ..      31     164 ..      18     213 .. 0.59

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 5e-09
     DUF4588  59 teFqnAAkavtsLYkestdaqkrSldlgiqkGyqrrirDllaWvkkrrreirredlisflcgkaepekserertrerasprerevekdksssatelsss 157
                 +eF+ AA+avt+LY+ +   +k+S  l  ++Gy  +++D+ + + kr+  +   d i   c k++ ek +++ +++ ++ +  + + ++++++++ + s
  CCD23145.1  31 QEFKIAANAVTKLYRVAN--EKNS--LLKHQGYISCLDDISELIEKRQ--VSSLDEIRHWCMKQKIEKYTQKMDKPNTNISTNINADQNQNNKYNFQFS 123
                 79****************..5555..667************9888875..7788999999999988666655555555555544444444433333333 PP

     DUF4588 158 veid...Lqpfreaialnslsgamskislavelrsptsfrp 195
                 ++     + ++ + i+  + +  m+ +s+  + ++  + r 
  CCD23145.1 124 SNGKtgnIDNSIQQIVSPKFKPSMAPMSVEHSFNEADTYRF 164
                 33222224444444444444444444443333333333333 PP

>> DUF713  Protein of unknown function (DUF713)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.6   4.8e-07    0.0043     122     180 ..      37      95 ..      33     101 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.8e-07
      DUF713 122 sdvatklleilevldeleldkekleelrelfskldpsdIptTskLrkiskeaksedYen 180
                 +++ tkl+++ ++ ++l +++  ++ l++  + ++  ++ + +++r +++++k e+Y +
  CCD23145.1  37 ANAVTKLYRVANEKNSLLKHQGYISCLDDISELIEKRQVSSLDEIRHWCMKQKIEKYTQ 95 
                 67789****************************************************64 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1373  (0.0765798); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1712.15
//
Query:       CCD23146.1  [L=480]
Description: hypothetical protein NDAI_0B01120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-05   26.1   0.0    1.9e-05   25.4   0.0    1.3  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    0.00017   21.5   0.0    0.00039   20.4   0.0    1.6  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.2e-09   1.9e-05       1      85 [.      65     156 ..      65     192 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.2e-09
                   EEEEEETTSHH....HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE...EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHT CS
  GFO_IDH_MocA   1 lrvaiiGaGki....gskhlrplnesqrleevvalldpdaeraeavaesfgve...aysdleelladpeidavivatpngtheelakaalea 85 
                   ++v+++G+ +      + h +++ + +++ e++al++p   ++    +++++    a+  +e  ++++ +d++++ + n  h+e+++ +l+ 
    CCD23146.1  65 IKVGFVGLSFKkgwaLKTHYPAILQLSSQFEITALYNPTIDSSISTIRELKLRnatAFPTIESFASSSGVDMIVISIENMNHYEIIMSLLKY 156
                   589999995545555899999********************9999988888877779999*****************************986 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.3e-08   0.00039       1      68 [.     209     279 ..     209     306 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.3e-08
                     HHHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSH...HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEE CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdvwtldtragaeakkrwkrrk...kksgGvlgdlgiHdiDllqwLfGqppsvvaal 68 
                     KelI++g +Ge++s++v   + ++g+e++  + + +   k++  ++++   H+iD+lq+++ +  s++ a 
      CCD23146.1 209 KELIAQGYIGEINSIEVAGNGGWYGYERPQKSPAYMfdiKNGTNLVTTTFGHTIDVLQYITSSYFSTINAM 279
                     9***************************999998889**********************998777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.19s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 3944.75
//
Query:       CCD23147.1  [L=160]
Description: hypothetical protein NDAI_0B01130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-43  147.1   1.0    1.2e-43  147.1   1.0    1.6  2  Hit1_C      Hit1 C-terminal
    6.5e-12   45.1  14.9    8.8e-12   44.7  10.1    2.2  2  zf-HIT      HIT zinc finger
    0.00036   20.2   0.0    0.00083   19.1   0.0    1.6  1  YL1_C       YL1 nuclear protein C-terminal domain
  ------ inclusion threshold ------
      0.016   15.5   1.8      0.023   14.9   1.8    1.3  1  Shisa       Wnt and FGF inhibitory regulator
      0.024   14.7   7.5      0.024   14.7   7.5    1.8  2  zf-MYND     MYND finger
      0.035   14.2   4.8      0.076   13.1   4.8    1.6  1  zf-Mss51    Zinc-finger of mitochondrial splicing suppressor 
      0.089   12.5   5.2      0.072   12.8   3.0    2.1  2  zf_C2H2_6   Zinc Finger domain
       0.16   12.2  10.8       0.14   12.3   6.6    2.1  2  zf-B_box    B-box zinc finger
       0.82   10.1  10.0         11    6.4   6.2    2.3  2  zf-RING_2   Ring finger domain
        1.8    9.0  11.8       0.23   11.8   7.4    1.9  2  zf-C6H2     zf-MYND-like zinc finger, mRNA-binding


Domain annotation for each model (and alignments):
>> Hit1_C  Hit1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.2   5.8e+03      20      20 ..      44      44 ..      31      65 .. 0.55
   2 !  147.1   1.0   6.7e-47   1.2e-43       1      82 []      70     148 ..      70     148 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.2
      Hit1_C 20 v 20
                v
  CCD23147.1 44 V 44
                2 PP

  == domain 2  score: 147.1 bits;  conditional E-value: 6.7e-47
      Hit1_C   1 fdeiyqetpelkellkyntvkfhlakvyrilttsegnggssdtlsseakkqlavdylntlryGGvhyneaieefCqillekl 82 
                 f +iy+etpelkellkyntvkfhl+kvyril+t++gnggs   ls+e+k+qla+dylntlryGGvhyneaieefCqi+l+kl
  CCD23147.1  70 FGQIYNETPELKELLKYNTVKFHLSKVYRILNTNTGNGGS---LSTEMKNQLAIDYLNTLRYGGVHYNEAIEEFCQICLRKL 148
                 679**********************************995...9************************************97 PP

>> zf-HIT  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7  10.1   4.9e-15   8.8e-12       4      30 .]       7      34 ..       5      34 .. 0.97
   2 ?    3.0   0.2     0.053        95       3       9 ..     139     145 ..     137     149 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 4.9e-15
                B-TTT-S.B-SEE-TTT--EESSHHHHH CS
      zf-HIT  4 lCgvCgf.pakYkCpkCntryCSLrCyk 30
                +Cg+C+   akYkCpkC++ryCSL+C+k
  CCD23147.1  7 KCGICQLqDAKYKCPKCGIRYCSLKCFK 34
                7*************************98 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.053
                 -B-TTT- CS
      zf-HIT   3 klCgvCg 9  
                 ++C++C 
  CCD23147.1 139 EFCQICL 145
                 8*****6 PP

>> YL1_C  YL1 nuclear protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.6e-07   0.00083       8      27 ..      15      34 ..      14      34 .. 0.95

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.6e-07
       YL1_C  8 pAkYrDPkTgLpYanveayk 27
                 AkY++Pk g++Y+++  +k
  CCD23147.1 15 DAKYKCPKCGIRYCSLKCFK 34
                69****************98 PP

>> Shisa  Wnt and FGF inhibitory regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.8   1.3e-05     0.023      17      79 ..       5      66 ..       2     100 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
       Shisa 17 gfqCp.fdtedadyCCGtCslrYC...CssvearldqstCtndeteeslktgreekekqlgsalevp 79
                g +C   + +da+y C +C+ rYC   C + e + + +t++++++ ++ ++      +q   a+ev+
  CCD23147.1  5 GIKCGiCQLQDAKYKCPKCGIRYCslkCFKDELKHNHNTVEKKDEVKEANK-----SEQTAAAVEVK 66
                5677777799**************999999999999999986655333332.....23334444444 PP

>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   7.5   1.4e-05     0.024       1      35 [.       8      42 ..       8      44 .. 0.83
   2 ?   -1.9   0.1       2.1   3.8e+03       1       6 [.     141     146 ..     138     152 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                -TTT--.B-SC.E-TTTS-SEESSHHHHHHCH.HHHC CS
     zf-MYND  1 CavCgkaealk.kCagCksvfYCskeCqradw.ksHk 35
                C  C+  + +k kC++C  ++YCs +C +     +H 
  CCD23147.1  8 CGICQL-QDAKyKCPKC-GIRYCSLKCFKDELkHNHN 42
                999***.55556*****.9********9998855676 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.1
                 -TTT-- CS
     zf-MYND   1 CavCgk 6  
                 C+ C +
  CCD23147.1 141 CQICLR 146
                 666665 PP

>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   4.8   4.2e-05     0.076       2      45 ..       8      45 ..       7      57 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.2e-05
    zf-Mss51  2 CPvpkhkqtapkhvdfeCpdCGiptycseehwedDyeahleicd 45
                C ++     + ++ +++Cp+CGi  ycs + ++d+ ++ ++ ++
  CCD23147.1  8 CGIC-----QLQDAKYKCPKCGI-RYCSLKCFKDELKHNHNTVE 45
                5555.....256799********.69*******99884444443 PP

>> zf_C2H2_6  Zinc Finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.0     4e-05     0.072       6      22 ..      26      42 ..      20      44 .. 0.93
   2 ?   -3.3   0.0       4.5     8e+03      14      18 ..      77      81 ..      77      82 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4e-05
   zf_C2H2_6  6 pYCsLRFsSpeLKkeHE 22
                +YCsL+ +  eLK++H 
  CCD23147.1 26 RYCSLKCFKDELKHNHN 42
                6***************6 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.5
   zf_C2H2_6 14 SpeLK 18
                +peLK
  CCD23147.1 77 TPELK 81
                69**9 PP

>> zf-B_box  B-box zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   6.6     8e-05      0.14       4      40 ..       6      44 ..       3      46 .. 0.90
   2 ?    1.8   0.1      0.15   2.7e+02       9      21 ..     132     144 ..     130     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8e-05
    zf-B_box  4 tkCpeHknkpatlfCedCqqplCe.eC..stgeHrgHevv 40
                 kC +++ + a++ C +C+   C+ +C  ++ +H+ H++v
  CCD23147.1  6 IKCGICQLQDAKYKCPKCGIRYCSlKCfkDELKHN-HNTV 44
                69*********************956***999997.9886 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.15
    zf-B_box   9 HknkpatlfCedC 21 
                 H n+ ++ fC+ C
  CCD23147.1 132 HYNEAIEEFCQIC 144
                 8888999999988 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.2    0.0063        11       2      37 ..       7      40 ..       6      42 .. 0.66
   2 ?    5.2   0.1     0.015        26       3      14 ..     141     152 ..     139     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0063
   zf-RING_2  2 eCpICleelssa.dsvlllpCgHvfh.reClerwlrss 37
                +C+IC+  l++a ++++  +Cg  ++  +C+++ l+++
  CCD23147.1  7 KCGICQ--LQDAkYKCP--KCGIRYCsLKCFKDELKHN 40
                7****5..433203444..6**9898567998877766 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.015
   zf-RING_2   3 CpICleelssad 14 
                 C ICl +l++ad
  CCD23147.1 141 CQICLRKLETAD 152
                 99**99998776 PP

>> zf-C6H2  zf-MYND-like zinc finger, mRNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   7.4   0.00013      0.23       6      44 ..      11      44 ..       4      47 .. 0.77
   2 ?   -2.6   0.1       3.9     7e+03      15      19 ..     141     145 ..     135     148 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
     zf-C6H2  6 CgkeassLqCptClklgikesfFCsqeCFkkn.wkkHkal 44
                C+ +  + +Cp+C   gi+   +Cs +CFk++  ++H ++
  CCD23147.1 11 CQLQDAKYKCPKC---GIR---YCSLKCFKDElKHNHNTV 44
                65555599*****...999...********9933567666 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.9
     zf-C6H2  15 CptCl 19 
                 C +Cl
  CCD23147.1 141 CQICL 145
                 55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1596  (0.0890178); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1322.25
//
Query:       CCD23148.1  [L=150]
Description: hypothetical protein NDAI_0B01140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0016   18.4   2.3     0.0024   17.9   2.3    1.3  1  zf-CCHC     Zinc knuckle
  ------ inclusion threshold ------
      0.019   14.9   1.1      0.031   14.2   1.1    1.3  1  zf-CCHC_3   Zinc knuckle
      0.041   13.6   1.3      0.078   12.7   1.3    1.4  1  zf-CCHC_5   GAG-polyprotein viral zinc-finger
      0.053   13.3   1.3      0.089   12.5   1.3    1.3  1  zf-C2H2_10  C2H2 zinc-finger
      0.097   12.4   0.4       0.17   11.6   0.4    1.4  1  zf-CCHC_4   Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   2.3   6.6e-07    0.0024       3      18 .]     129     144 ..     127     144 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 6.6e-07
                 TSSSSSSSSTTTTSTS CS
     zf-CCHC   3 CynCGepGHiardCpk 18 
                 C nCG+pGH + +C++
  CCD23148.1 129 CLNCGKPGHTKAQCKE 144
                 88************85 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.1   8.6e-06     0.031       3      24 ..     125     146 ..     124     150 .] 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.6e-06
   zf-CCHC_3   3 asaaCQkClkkGHwtYECknag 24 
                 a+ +C +C+k+GH   +Ck+a+
  CCD23148.1 125 ANGFCLNCGKPGHTKAQCKEAS 146
                 6899***************644 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.3   2.2e-05     0.078       2      19 ..     126     143 ..     125     145 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.2e-05
                 --B-TTT-SSBS-TTT-- CS
   zf-CCHC_5   2 pglCpRCkkgkHwardCh 19 
                  g C+ C+k  H + +C+
  CCD23148.1 126 NGFCLNCGKPGHTKAQCK 143
                 589**************8 PP

>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.3   2.5e-05     0.089       9      20 ..     132     143 ..     128     144 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
  zf-C2H2_10   9 ChetGHtRAkCe 20 
                 C ++GHt A+C+
  CCD23148.1 132 CGKPGHTKAQCK 143
                 ***********7 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   4.8e-05      0.17      32      48 ..     127     143 ..     125     144 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.8e-05
   zf-CCHC_4  32 sfCyiCgvlGHsdkrCd 48 
                  fC +Cg  GH+ ++C+
  CCD23148.1 127 GFCLNCGKPGHTKAQCK 143
                 69**************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 1262.54
//
Query:       CCD23149.1  [L=253]
Description: hypothetical protein NDAI_0B01150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-25   89.3   0.3      3e-25   88.8   0.3    1.2  1  Peptidase_A2B    Ty3 transposon peptidase
    2.7e-08   34.3   0.0    5.6e-08   33.3   0.0    1.5  1  Asp_protease_2   Aspartyl protease
    1.3e-06   28.9   0.0    2.8e-06   27.8   0.0    1.5  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
     0.0079   16.0   0.0      0.015   15.1   0.0    1.5  1  RVP_2            Retroviral aspartyl protease
  ------ inclusion threshold ------
      0.056   13.2   0.0      0.093   12.5   0.0    1.5  1  DUF1758          Putative peptidase (DUF1758)


Domain annotation for each model (and alignments):
>> Peptidase_A2B  Ty3 transposon peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.8   0.3   8.3e-29     3e-25      19     141 ..      15     136 ..       7     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 88.8 bits;  conditional E-value: 8.3e-29
  Peptidase_A2B  19 slpivhyiaipemdktaektikikntkvktlfdsgsptsfirrdivellkleiyetpplrfrgfvatksavtseavtldlkvddlqitlaayvldk 114
                      piv+  a p++  t  kt++ +    k lfd+gspts+ir d+ + lkl++  +pp+ frg+v+++ a+t ea  +++   +  i+laayv d 
     CCD23149.1  15 LCPIVQ-TANPKIGSTLTKTLNCNGEPCKVLFDTGSPTSLIRTDVDQKLKLKLAAAPPFEFRGMVSAEKAATKEAAKVNIAAGNTAIKLAAYVTDA 109
                    567776.689************************************************************************************** PP

  Peptidase_A2B 115 mdyqllignpilrrypkllytvlntke 141
                    m +++++gnp++  y  ++y +    +
     CCD23149.1 110 MPHDIIVGNPVIDEYKDVIYNLRSDTD 136
                    *******************98765544 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.6e-11   5.6e-08       4      89 ..      35     119 ..      33     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.6e-11
  Asp_protease_2   4 tinGkpvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrldslkl..ggltlknvpalvldlgeeidglLGmd 89 
                     + nG+p+++l+DTG+ t+li++++ +kl+lk  + + +  ++g   + ka++  + ++++  g+ t+  ++a+v+d   ++d++ G +
      CCD23149.1  35 NCNGEPCKVLFDTGSPTSLIRTDVDQKLKLKLAAAP-PFEFRGMVSAEKAATKEAAKVNIaaGN-TAIKLAAYVTD-AMPHDIIVGNP 119
                     579*****************************9986.888888777777777777766654266.7778*******.8899***9987 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   7.7e-10   2.8e-06       4      88 ..      35     119 ..      33     123 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 7.7e-10
                      EETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEEEEEE...EETTEEEEEEEEEESSSSEEEEHH CS
  gag-asp_proteas   4 kingkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrldsvki..ggielrnvsavvlegelddlLLGld 88 
                      + ng+p+k+l+DTG  +++i +++ ++l+l+      ++e++ +   ++a++ + ++v+i  g+ ++ ++ a+v++++++d++ G  
       CCD23149.1  35 NCNGEPCKVLFDTGSPTSLIRTDVDQKLKLKLAAA-PPFEFRGMVSAEKAATKEAAKVNIaaGN-TAIKLAAYVTDAMPHDIIVGNP 119
                      56*******************************96.5999*****9999999999999996344.555699****9999****9975 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.1e-06     0.015      23     110 ..      31     117 ..      19     135 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.1e-06
       RVP_2  23 lgtflvnsipatvLfdsGasHsFiskafvsklklkveaLstpllietPvgssvtakeicksveieiqgiefladlilLdlkdlDviLg 110
                 + t+  n+ p +vLfd+G   s i + + +klklk  a   p+     v+ +  a++ + +v+i   ++ +     + d    D+i+g
  CCD23149.1  31 TKTLNCNGEPCKVLFDTGSPTSLIRTDVDQKLKLKLAA-APPFEFRGMVSAEKAATKEAAKVNIAAGNTAIKLAAYVTDAMPHDIIVG 117
                 56777899**************************9865.3455555555555555556666666666666666666666666666666 PP

>> DUF1758  Putative peptidase (DUF1758)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.6e-05     0.093      12      61 ..      40      90 ..      32     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.6e-05
     DUF1758 12 karllfDsGselsYiseRlinaLgL..artpsriLvigisadkaeairgssr 61
                 +++lfD+Gs  s i + + ++L+L  a +p       +sa+ka a++++++
  CCD23149.1 40 PCKVLFDTGSPTSLIRTDVDQKLKLklAAAPPFEFRGMVSAEKA-ATKEAAK 90
                59*******************98761155554434444555555.3444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2122.56
//
Query:       CCD23150.1  [L=308]
Description: hypothetical protein NDAI_0B01160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-11   44.6   0.0    2.2e-11   43.9   0.0    1.4  1  Retrotrans_gag   Retrotransposon gag protein
    0.00036   20.2   4.9    0.00083   19.0   4.9    1.6  1  zf-CCHC_5        GAG-polyprotein viral zinc-finger
    0.00077   19.3   0.0     0.0014   18.5   0.0    1.4  1  DUF4939          Domain of unknown function (DUF4939)
      0.004   17.2   1.9     0.0075   16.3   1.9    1.5  1  zf-CCHC          Zinc knuckle
  ------ inclusion threshold ------
      0.059   12.0   0.0       0.25    9.9   0.0    1.9  3  Pectate_lyase22  Oligogalacturonate lyase
       0.15   12.1   0.5        3.8    7.7   0.0    2.6  2  DUF962           Protein of unknown function (DUF962)
        1.3    8.8   4.1        2.4    7.9   4.1    1.4  1  zf-CCHC_4        Zinc knuckle


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   8.6e-15   2.2e-11       5      95 ..      72     162 ..      68     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 8.6e-15
  Retrotrans_gag   5 tslegaAkswlkslvarsidasesWkdlkkaflktflpserkdqleeelsslrQgtesvreYvtrfktladqlde.vlteeakiekflaGLn 95 
                      +l+g+A +w+ +  ++    +++++++ + f+++f++  + ++  +e  s++Q +  v++Y +rf++l++ ++  v+te+ +i ++l+GL 
      CCD23150.1  72 RNLSGPAVNWFLHWFENAAP-ATTYETFLDCFRDHFFKRLDPNKIINEMNSISQAQLGVEQYNARFSQLWALMPPhVWTEQGAILAYLRGLS 162
                     589*********99999999.69***************************************************99**************95 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   4.9   3.3e-07   0.00083       3      20 ..     285     302 ..     283     305 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.3e-07
                 -B-TTT-SSBS-TTT--- CS
   zf-CCHC_5   3 glCpRCkkgkHwardChs 20 
                  lC RCk+g H ar+C++
  CCD23150.1 285 HLCFRCKRGGHSARECRA 302
                 59**************97 PP

>> DUF4939  Domain of unknown function (DUF4939)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.6e-07    0.0014      29     104 ..      32     106 ..      29     113 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5.6e-07
     DUF4939  29 petfdG..dtdrlpefivqtlsymlvdektfssdalkvtflitrltGealewvlpyikkdspllndyraflaemkrvf 104
                 p tf+G  d   lp f+  +    ++  +  ++d+ k++f+   l+G+a++w l + ++ +p    y +fl+  +  f
  CCD23150.1  32 PATFSGlqDIMTLPTFLTTM-KLQFIT-RSITTDSDKIAFFGRNLSGPAVNWFLHWFENAAPA-TTYETFLDCFRDHF 106
                 88999944555899998655.555554.56889999**********************99996.67999999887776 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.9   2.9e-06    0.0075       3      17 ..     287     301 ..     286     302 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.9e-06
                 TSSSSSSSSTTTTST CS
     zf-CCHC   3 CynCGepGHiardCp 17 
                 C++C + GH ar+C 
  CCD23150.1 287 CFRCKRGGHSARECR 301
                 **************6 PP

>> Pectate_lyase22  Oligogalacturonate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.49   1.3e+03      28      65 ..      45      83 ..      37      97 .. 0.70
   2 ?   -2.2   0.0      0.47   1.2e+03      10      40 ..      94     124 ..      90     130 .. 0.82
   3 ?    9.9   0.0    0.0001      0.25     243     276 ..     146     179 ..     143     209 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.49
  Pectate_lyase22 28 ppdvichrnyfyqkcftrdgskllf.ggafdgprnyyll 65
                     p+ ++  +  f  + +t d +k+ f g ++ gp   ++l
       CCD23150.1 45 PTFLTTMKLQFITRSITTDSDKIAFfGRNLSGPAVNWFL 83
                     566667777889999999999986515578887544333 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.47
  Pectate_lyase22  10 sfetyqdsstgvkvtrltppdvichrnyfyq 40 
                      ++et+ d+  +    rl p+ +i   n + q
       CCD23150.1  94 TYETFLDCFRDHFFKRLDPNKIINEMNSISQ 124
                      7999999999999999999999988877665 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0001
  Pectate_lyase22 243 evwvpdgsalayvsylkgsterviysadpvtlen 276
                       vw  +g+ lay+  l g+t r+++ a+p+tl++
       CCD23150.1 146 HVWTEQGAILAYLRGLSGDTARLVMLAHPKTLNE 179
                      58*****************************975 PP

>> DUF962  Protein of unknown function (DUF962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0015       3.8      57      92 ..      19      53 ..      18      56 .. 0.89
   2 ?    1.8   0.1       0.1   2.6e+02      56      78 ..      78      99 ..      67     110 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0015
      DUF962 57 fafvGHfvfEkrkPAlfknplqsllidplmvllell 92
                f f G  v+ ++ PA+f+  lq +++ p ++  + l
  CCD23150.1 19 FTFTGPTVLKGNAPATFSG-LQDIMTLPTFLTTMKL 53
                789999*************.*******999988765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
      DUF962 56 ifafvGHfvfEkrkPAlfknplq 78
                ++ ++ H  fE   PA+  + + 
  CCD23150.1 78 AVNWFLHW-FENAAPATTYETFL 99
                57899999.*******9876555 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   4.1   0.00094       2.4      32      48 ..     285     301 ..     280     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00094
   zf-CCHC_4  32 sfCyiCgvlGHsdkrCd 48 
                  +C+ C + GHs+++C+
  CCD23150.1 285 HLCFRCKRGGHSARECR 301
                 46**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2271.41
//
Query:       CCD23151.1  [L=471]
Description: hypothetical protein NDAI_0B01170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-95  319.3  18.4    2.7e-95  318.9  18.4    1.1  1  KCH       Fungal potassium channel


Domain annotation for each model (and alignments):
>> KCH  Fungal potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.9  18.4   1.5e-99   2.7e-95       2     250 ..      15     265 ..      14     266 .. 0.98

  Alignments for each domain:
  == domain 1  score: 318.9 bits;  conditional E-value: 1.5e-99
         KCH   2 fdfidledFksksfltvlkYil.lwvllllslavyvsDiytavkLLafnkwsne.ikpaipfkiskwiFsgcIilsfvllayeaikairiirsrniaea 98 
                 fd+id   F +++f+t++kYil +w++ ll+la+++sDiyt++kLLafn+wsn+ ikp+++fk+skwiFsgcI+ s++ll++e+i +i i+r+rni+++
  CCD23151.1  15 FDDIDPLLFLNHRFKTIIKYILsMWLMNLLQLALFISDIYTCIKLLAFNSWSNNlIKPYVSFKVSKWIFSGCILGSIALLLWEIICGIGIYRTRNISLT 113
                 9************************************************************************************************** PP

         KCH  99 ylnnlarrlyslrsYkrFcvfeeitkskkkadkvalfvyfelkswlrllladgPRqviNaltLysvlkaklkekgekkleslsglfekikalaeenlee 197
                 ++nn++r++ys+++Y +Fc++++i +sk+ ++k+a+f++felk+++rlll+d+PRqviN+ltL+s+l + + +++  +les+sgl++k++++ae+n++e
  CCD23151.1 114 FVNNFSRNVYSMTEYPKFCIYDKI-SSKGAFQKIAFFTFFELKDCMRLLLTDTPRQVINGLTLWSALVTVHANADLGDLESFSGLINKLQRIAETNHQE 211
                 ************************.*********************************************998788889******************** PP

         KCH 198 avilsfmlftvviwvlsilklivavilyipllvkiikked.gsLkeYccrkvdk 250
                 avilsfmlf++++w++++++liva+++++++++++ik+++ ++LkeY+c +v++
  CCD23151.1 212 AVILSFMLFSFIVWAFFMARLIVAMFCAFFVYFRLIKEQEyNGLKEYVCITVSR 265
                 ************************************9999899********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3740.74
//
Query:       CCD23152.1  [L=563]
Description: hypothetical protein NDAI_0B01180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 4123.77
//
Query:       CCD23153.1  [L=562]
Description: hypothetical protein NDAI_0B01190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.22   12.0  27.6      0.093   13.2   1.4    5.8  7  LRR_4     Leucine Rich repeats (2 copies)
        0.4   10.9  12.9          3    8.1   0.0    6.5  6  LRR_6     Leucine Rich repeat
        3.8    8.0  10.4      0.083   13.3   2.4    2.3  2  IBB       Importin beta binding domain


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.4   1.4e+04       5      18 ..     221     235 ..     220     241 .. 0.60
   2 ?   13.2   1.4   1.6e-05     0.093       1      32 [.     254     289 ..     254     297 .. 0.85
   3 ?   -1.8   0.0      0.79   4.7e+03       6      30 ..     339     367 ..     335     378 .. 0.58
   4 ?    1.1   0.1     0.098   5.9e+02      23      33 ..     390     400 ..     372     411 .. 0.72
   5 ?    1.2   1.6     0.091   5.5e+02       1      31 [.     390     431 ..     390     443 .. 0.60
   6 ?   10.5   1.3   0.00011      0.66       1      32 [.     479     511 ..     479     518 .. 0.71
   7 ?    5.8   0.4    0.0032        19       2      36 ..     504     542 ..     503     547 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.4
                 EEE--.SS---E-S- CS
       LRR_4   5 vLdLs.nNqltdipl 18 
                 +L L+  + ltd+ +
  CCD23153.1 221 TLQLFlKTDLTDLAF 235
                 566666667777765 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.6e-05
                 SS--EEE--SS.---E-S-HH...H-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnN.qltdiplle...klpnLkeLdLsg 32 
                 p+L++L+L+ + ql   +ll+   klpnL++LdL g
  CCD23153.1 254 PHLTKLSLQMCgQLNNESLLYiaeKLPNLTSLDLDG 289
                 79*******7779**9999777779*********54 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.79
                 EE--SS---E-S-....HHH-TT..--EEE- CS
       LRR_4   6 LdLsnNqltdipl....leklpn..LkeLdL 30 
                 L Ls   l +i++    ++ l+n   ++L+L
  CCD23153.1 339 LGLSR--LDSISNyallPQYLKNehFHSLSL 367
                 44554..778877554322255544666766 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.098
                 TT--EEE-.-S CS
       LRR_4  23 pnLkeLdLsgN 33 
                 +nLk+L L g+
  CCD23153.1 390 KNLKTLVLDGC 400
                 67777777665 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.091
                 SS--EEE--SS.---E-S-..HH..........H-TT--EEE-. CS
       LRR_4   1 pnLevLdLsnN.qltdipl..le..........klpnLkeLdLs 31 
                 +nL++L L ++  ltd  +  ++          ++  L++L+L 
  CCD23153.1 390 KNLKTLVLDGClELTD--SmiINgmcaflhdgnNCSLLETLSLA 431
                 5788888887745666..44433444455566347778888874 PP

  == domain 6  score: 10.5 bits;  conditional E-value: 0.00011
                 SS--EEE--SS---E-S-...HH.H-TT--EEE-.- CS
       LRR_4   1 pnLevLdLsnNqltdipl...le.klpnLkeLdLsg 32 
                 ++L++L+L++  l+++     ++ ++ nL++LdL g
  CCD23153.1 479 QSLKELSLNS--LKELTCeafISlSCENLQSLDL-G 511
                 68*******8..5554443333356*********.5 PP

  == domain 7  score: 5.8 bits;  conditional E-value: 0.0032
                 S--EEE--SS---E-S-.....HHH.-TT--EEE-.-S--- CS
       LRR_4   2 nLevLdLsnNqltdipl.....lek.lpnLkeLdLsgNnli 36 
                 nL++LdL+   ++ ++      +++ +pnL+ +d+ g nl+
  CCD23153.1 504 NLQSLDLGF--VRCVDDkvieeISSrNPNLELIDVFGDNLV 542
                 999999998..7777776644433558*******9565565 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0005         3       2      24 .]     253     276 ..     252     276 .. 0.90
   2 ?    1.4   0.1     0.074   4.4e+02       3      10 ..     280     287 ..     278     289 .. 0.83
   3 ?   -0.6   0.3      0.31   1.9e+03       4      17 ..     391     405 ..     390     406 .. 0.86
   4 ?    2.1   0.1     0.043   2.6e+02       1      21 [.     421     442 ..     421     445 .. 0.85
   5 ?   -0.2   0.1      0.24   1.4e+03       3      12 ..     479     488 ..     477     493 .. 0.81
   6 ?    0.9   0.0       0.1   6.2e+02       2      11 ..     502     511 ..     501     512 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0005
       LRR_6   2 nthLteLdLsgNd.IgDeGaeaLa 24 
                 ++hLt+L+L+ ++ +++e +  +a
  CCD23153.1 253 SPHLTKLSLQMCGqLNNESLLYIA 276
                 68***************9988776 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.074
       LRR_6   3 thLteLdL 10 
                 ++Lt+LdL
  CCD23153.1 280 PNLTSLDL 287
                 89*****9 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.31
       LRR_6   4 hLteLdLsgNd.IgD 17 
                 +L++L L g+  ++D
  CCD23153.1 391 NLKTLVLDGCLeLTD 405
                 79*****99988887 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.043
       LRR_6   1 snthLteLdLsgNd.IgDeGae 21 
                 +++ L++L+L+  d I+++ + 
  CCD23153.1 421 NCSLLETLSLAELDqITNDSLV 442
                 5889********9999998775 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.24
       LRR_6   3 thLteLdLsg 12 
                 ++L+eL+L++
  CCD23153.1 479 QSLKELSLNS 488
                 7899999987 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.1
       LRR_6   2 nthLteLdLs 11 
                 + +L++LdL 
  CCD23153.1 502 CENLQSLDLG 511
                 789*****97 PP

>> IBB  Importin beta binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   1.1      0.71   4.3e+03      67      72 ..      89      94 ..      33     119 .. 0.58
   2 ?   13.3   2.4   1.4e-05     0.083      12      79 ..     126     201 ..     121     211 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.71
                XXXX-- CS
         IBB 67 leelee 72
                + +le+
  CCD23153.1 89 SINLEK 94
                333333 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.4e-05
                 XXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX......XXXX.................XXXXXXXXXXXX-----TT-- CS
         IBB  12 aeelRrrReeeqvel..RKqkreeqllKrRnvaa......eaaaeeeadseeee......eessaeekkleeleemvqgvnS 79 
                  +elR++R+ e ++   RK+kr  +ll rR  ++      +        + +e+      e+++ e++   +l +++ g++ 
  CCD23153.1 126 DDELRKKRTREVLKTrqRKRKRAAKLLDRRTTKIatlqdmA------IAKISESitswerEKDQGENTVFAHLRDVLGGISI 201
                 5899*9999998886226888999********985444441......22222223333334455556666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4056.12
//
Query:       CCD23154.1  [L=504]
Description: hypothetical protein NDAI_0B01200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-68  231.8   0.0    1.9e-68  231.5   0.0    1.1  1  FAD_binding_2  FAD binding domain
    1.4e-08   34.7   0.1    1.2e-06   28.4   0.0    2.3  2  DAO            FAD dependent oxidoreductase
    4.5e-06   26.8   0.0    1.3e-05   25.3   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    5.6e-06   25.8   2.2    0.00017   20.9   1.1    2.3  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.8e-05   24.1   1.3     0.0016   17.7   0.1    2.4  2  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.017   15.2   0.0       0.08   12.9   0.0    2.0  2  NAD_binding_9  FAD-NAD(P)-binding
      0.041   13.1   0.6          4    6.6   0.1    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.096   11.4   6.0       0.06   12.0   1.8    2.5  2  HI0933_like    HI0933-like protein
       0.11   11.7   0.2       0.19   10.9   0.2    1.3  1  FAD_binding_3  FAD binding domain
       0.12   12.3   0.3       0.94    9.4   0.0    2.2  2  DUF3659        Protein of unknown function (DUF3659)


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.5   0.0   1.1e-71   1.9e-68       2     417 .]      39     484 ..      38     484 .. 0.85

  Alignments for each domain:
  == domain 1  score: 231.5 bits;  conditional E-value: 1.1e-71
                    EEEE--SHHHHHHHHHHHHTTT.-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGl.kvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    v++iGsGlAGL+ + ++  + +  +++++k+++ gg++  ++ gi+ +l+++q+k  i+dsp +  +dtlk++ + + ++l+  + + ++ a+++L
     CCD23154.1  39 VVIIGSGLAGLTTGNQLVTKHKiPIILLDKASSIGGNSIKASSGINGALTNTQEKFHINDSPAAFYRDTLKSAKGKGVPDLMNKLSRDSKSAISWL 134
                    9****************998888************************************************************************* PP

                    HHT.T----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCT......EEEEESEEEEEEEECTTEEEEEEEEET... CS
  FAD_binding_2  97 eel.gvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkag......vdfqerteadeLivedgrvtGavvenp... 182
                    ++   ++++        +++lGg+s + rt+++ +++      +g++++ +l e++++ +      v++    ++  ++v            +   
     CCD23154.1 135 QNGfDLKLDL-------LAQLGGHSFP-RTHRSSGKK-----PPGFEIVSTLSEKLKDIQkqnpklVQIKLDSKVIGVNV----------DTKgqv 207
                    *765566666.......9*********.****99998.....7*************555444555555555555555555..........555555 PP

                    .......TTTCEEEEEESEEEE-----GG............GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTB...B- CS
  FAD_binding_2 183 .......esgrevrirakavvlatgGfgr..allkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgi...Li 266
                           ++g+ ++i+  +vv a+gGfg   ++l+e+++++ +  ttn  + tGdg+++ +  ga+l d  m ++q hPt+ +++ d+s     L 
     CCD23154.1 208 snveytdSDGSVQKIETSNVVFASGGFGFskEMLQEYAPHLINLPTTNGQQTTGDGQKILQKLGADLID--MNQIQVHPTGFIDPNDRSSNwkfLA 301
                    5555554999999********************************************************..************99988888999** PP

                    -THHHHTT-EEE-.TTSSBTHGGGS-HHHHHHHHH.HHHHTTTSCCBEEEE-TT.......................................... CS
  FAD_binding_2 267 tealrgeGgilvd.kdGrrFmnelasrdvvsrailekeiaeggseanvyldash.......................................... 319
                     ealrg Ggil++  +G+rF+nel++rd v+rai +  ++ +++     l++s                                           
     CCD23154.1 302 AEALRGLGGILINpLNGKRFVNELETRDNVTRAIQTYCPQDENK---ALLIMSEkvyenykpnmdfymfknlirkmsvsqclkefklpiseidfid 394
                    ***********************************888887776...4666666788888889999999999999999998888877777777444 PP

                    ....SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE.......EEEEEEEES-EEEBETTSBESTTEEESS.BTEEE-STCEESSSSTTS- CS
  FAD_binding_2 320 ...gldaegleatleaineeaangldkdfgrgidpadrpipgpfyavkvvpaqhytmgGvetdengrvldadgqpi.pGLYAaGevaaggvhganr 411
                        + +   +  +e+  + ++n ++       +++++     +y  +++p +h+tmgG +++e+++v ++ g+++  GLYAaGev  ggvhganr
     CCD23154.1 395 dlkLYSSTEAADPFER--QSVINTFG------SNINHE---TMIYVGEITPVVHFTMGGARINEKSQVVNKRGEVLaHGLYAAGEVS-GGVHGANR 478
                    4333333333333333..44444444......666666...445************************8888877626*********.******** PP

                    -TTHHH CS
  FAD_binding_2 412 lgGnsl 417
                    lgG+sl
     CCD23154.1 479 LGGSSL 484
                    ****98 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   6.8e-10   1.2e-06       2      72 ..      39     135 ..      38     182 .. 0.77
   2 ?    4.5   0.0     0.012        22     161     210 ..     188     241 ..     177     346 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 6.8e-10
                 EEEECTSHHHHHHHHHHH.HTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH........................HHHHHHHHHHHHHHHHH CS
         DAO   2 vviiGGGiiGlstAyeLa.rrg..VtllekgdiagsgaSgrnsgllhsglrylpeas........................elarlslealeelrele 72 
                 vviiG+G +Gl+t  +L  +++  ++ll+k++ +g g S ++s  + ++l +++e+                          + +ls+++   + +l+
  CCD23154.1  39 VVIIGSGLAGLTTGNQLVtKHKipIILLDKASSIG-GNSIKASSGINGALTNTQEKFhindspaafyrdtlksakgkgvpdLMNKLSRDSKSAISWLQ 135
                 9****************7366699***********.**********9999544443346666777777777777777777655566666666666555 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.012
                 -EEEESECEEEEEEEE.TCEEEEE.EECTEEEEEEEE..EEE--GGGHHHH.HTT CS
         DAO 161 veilegtevtgleeed.gkvwgve.rttpgendaada..vVnaaGawsdll.gll 210
                 v+i + ++v g++ +  g+v++ve ++++g+++++++  vV a G + +++ ++l
  CCD23154.1 188 VQIKLDSKVIGVNVDTkGQVSNVEyTDSDGSVQKIETsnVVFASGGF-GFSkEML 241
                 8999999****95544699999*9644448876667788******88.4554444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   7.4e-09   1.3e-05       1      36 [.      41      77 ..      41     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 7.4e-09
                   EE--SHHHHHHHHHHH.CCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLa.kagfdvlllekrdrlGGraa 36
                   I+G+Gl+Gl++   L  k+++ + ll+k++++GG++ 
     CCD23154.1 41 IIGSGLAGLTTGNQLVtKHKIPIILLDKASSIGGNSI 77
                   9***********998626799*************985 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   1.1   9.5e-08   0.00017       3     112 ..      39     236 ..      37     269 .. 0.80
   2 ?    3.4   0.0      0.02        36     249     280 ..     442     472 ..     397     482 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 9.5e-08
                  EEEE--SHHHHHHHHHHHH.HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.......................................... CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................... RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaq.agakvtlvelegtclnggcllskallgvaedaeias.......................................... 57 
                  vv+iG+G AGl++  +l + +++ ++l+++   + ++ +  s+ + g+  ++++                                            
   CCD23154.1  39 VVIIGSGLAGLTTGNQLVTkHKIPIILLDKASSIGGNSIKASSGINGALTNTQEKFhindspaafyrdtlksakgkgvpdlmnklsrdsksaiswlqn 136
                  9*****************97899999998444444444444554444444443322455599************************************ PP

                  .........................................HHHHCHHHH.CCCCHCCTCEEEEESC.EEEEETEEEC..TCEEEEEESEEEE---EE CS
                  .........................................xxxxxxxxx.xxxxxxxxxxxxxxxx.xxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 .........................................evvkklnqg.ielllgeevvkidpgk.kkvklekkke..gdeekiaydklvlAtGss 110
                                                           + ++k+n + ++  l+++v+++  +  ++v   + ++  g+ +ki+  ++v A+G+ 
   CCD23154.1 137 gfdlkldllaqlgghsfprthrssgkkppgfeivstlseklKDIQKQNPKlVQIKLDSKVIGVNVDTkGQVSNVEYTDsdGSVQKIETSNVVFASGGF 234
                  *******************************99999999997778888887888888887777755534554443333559999************85 PP

                  E- CS
                  xx RF
  Pyr_redox_2 111 pr 112
                   +
   CCD23154.1 235 GF 236
                  54 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.02
                  T-EEEETTEEE--TTSBESSTTEEE-GGGCTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 249 glelderggivvdeflrtnvpgiyaiGDvagg 280
                  g  + +    vv++++++  +g+ya+G v gg
   CCD23154.1 442 GARI-NEKSQVVNKRGEVLAHGLYAAGEVSGG 472
                  4444.566678******************933 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1     9e-07    0.0016      13      57 ..      32      76 ..      21      87 .. 0.88
   2 !    4.9   0.1    0.0076        14     202     232 ..     449     480 ..     437     482 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 9e-07
                HHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4 13 lkyaesDvvivGaGssGLtaayylakkpdlkvailersvspGGGa 57
                 k++ s vvi+G+G +GLt++  l +k ++ +++l++  s+GG +
  CCD23154.1 32 KKLITSPVVIIGSGLAGLTTGNQLVTKHKIPIILLDKASSIGGNS 76
                5778999*****************9999**************975 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0076
                 HHHHHHECEEE.TTEEE-THHHHHHHT-EB-- CS
        Thi4 202 daivkktrevv.pnlyvaGmevaevdganRmG 232
                 +++v+k  ev+ ++ly+aG  +  v+ganR+G
  CCD23154.1 449 SQVVNKRGEVLaHGLYAAGEVSGGVHGANRLG 480
                 46777777775379*****************9 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.5e-05      0.08       1      57 [.      40      93 ..      40     155 .. 0.87
   2 ?   -0.6   0.0      0.64   1.2e+03     104     155 ..     177     233 ..     172     234 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.5e-05
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtdqseelllNvpas 57
                   +i+G G +Gl++ ++L+ +    +++ i l d+ s++g  ++  ++  +  l+N++ +
     CCD23154.1 40 VIIGSGLAGLTTGNQLVTK----HKIPIILLDKaSSIGGNSIKASSGINGALTNTQEK 93
                   7*****************9....6*********6677866776777788889998754 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.64
  NAD_binding_9 104 feellarlpegvtvevhraevvdleeradgq..avll..adg..aslaadaVvLAlGh 155
                    +++++++ p+ v++++  ++v+ ++ + +gq   v    +dg  ++++  +Vv A G 
     CCD23154.1 177 LKDIQKQNPKLVQIKL-DSKVIGVNVDTKGQvsNVEYtdSDGsvQKIETSNVVFASGG 233
                    5666666666666664.67788777777665433443225665567999999999985 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0022         4       1      62 [.      40     101 ..      40     114 .. 0.79
   2 ?    4.7   0.0    0.0083        15      95     275 ..     198     242 ..     153     262 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0022
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkg.ni.gnsiyrypkemtfispsftsekleipdlna 62 
                  +IiG G aGl+++ +l  +    ++ l+k+ +i gnsi+     +  ++   t+ek+ i d +a
   CCD23154.1  40 VIIGSGLAGLTTGNQLVTKHKIPIILLDKAsSIgGNSIKASSGINGALTN--TQEKFHINDSPA 101
                  7*************9977766699*****965536888887777777773..677888877765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0083
  Pyr_redox_3  95 elpiklfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeVtv 192
                   +++ ++ +V +v+ +d+  +v    +++e+++v+ A G f                                                         
   CCD23154.1 198 GVNVDTKGQVSNVEYTDSDGSV----QKIETSNVVFASGGF--------------------------------------------------------- 234
                  2222222223333322222222....245555555555555......................................................... PP

  Pyr_redox_3 193 vtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflk 275
                                                                                               + ++l+
   CCD23154.1 235 ---------------------------------------------------------------------------GFSKEMLQ 242
                  ...........................................................................55555544 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.8   3.3e-05      0.06       3     165 ..      39     234 ..      37     239 .. 0.66
   2 ?   -1.4   0.1       0.4   7.1e+02     356     406 ..     439     494 ..     432     497 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.3e-05
                  EEEE--SHHHHHHHHHH.HHTT--EEEE-SSSSS-.HHHHHCGGGT-EEEE......TT-SGGGEEES.....STTTTHHHHHHS..-HHHHHHHHHH CS
  HI0933_like   3 viviGgGaAGlmaAisa.akrgkrVlllekakklg.rKilisGgGrcNvTn......lseepeellsrype..npkflksalsrf..tnedlialvee 88 
                  v++iG G AGl +  ++  k++  ++ll+ka+++g + i+ s g    +Tn      ++ +p+++ +   +  ++k +   +++   +++  i+++++
   CCD23154.1  39 VVIIGSGLAGLTTGNQLvTKHKIPIILLDKASSIGgNSIKASSGINGALTNtqekfhINDSPAAFYRDTLKsaKGKGVPDLMNKLsrDSKSAISWLQN 136
                  9*************999789999**********97356777766555666611111123445666655432113444444555441145678888874 PP

                  ...TT--EEE-STTEEEETT.-CH.......HHHHHHHHHHHHHT......-EEE-S--EEEEECETTE.E.EEEE.....TTEEEEESEEEE----S CS
  HI0933_like  89 ...lgvelkeedsgrlFpvsdkae.......divdallkelkeag......vklrletevksvekeedgkf.rvkt.k...seeeleadklvlAtGGl 165
                     l+++l  +  g  Fp++++++       +iv++l ++lk+ +      v+++l+++v +v+ +++g++ +v++ +   s +++e++++v+A+GG 
   CCD23154.1 137 gfdLKLDLLAQLGGHSFPRTHRSSgkkppgfEIVSTLSEKLKDIQkqnpklVQIKLDSKVIGVNVDTKGQVsNVEYtDsdgSVQKIETSNVVFASGGF 234
                  33356777778889999999988655566667999999888763333345599999999999988777654145553344455789999999999996 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.4
                  EEEEE-GGGB-TTT-B..BTTSTTEEE-GGGB.SEEE..-TTTHHHHHHHHHHHHH CS
  HI0933_like 356 TaGGVdlkevssktme..skkvpgLffaGEvl.Dveg..vtGGynlqaAwasgyaA 406
                  T+GG +++e s+   +       gL+ aGEv   v+g   +GG  l  + + g +A
   CCD23154.1 439 TMGGARINEKSQVVNKrgEVLAHGLYAAGEVSgGVHGanRLGGSSLLECVVFGRTA 494
                  666666665443322200235689******95235552246666666666666665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00011      0.19       3      34 ..      38      70 ..      36      84 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                   EEEEE--SHHHHHHHHHHHH.TTHHEEEEESSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLse.aGvrvvlvekrs 34
                   +V+I+G+G+aGl++++ L + + +  +l++k s
     CCD23154.1 38 PVVIIGSGLAGLTTGNQLVTkHKIPIILLDKAS 70
                   7**************988651556677777766 PP

>> DUF3659  Protein of unknown function (DUF3659)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1      0.46   8.3e+02      32      46 ..     195     209 ..     193     219 .. 0.82
   2 ?    9.4   0.0   0.00053      0.94      33      53 ..     440     460 ..     418     466 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.46
     DUF3659  32 kLaGkkvdedGnivd 46 
                 k++G  vd +G++ +
  CCD23154.1 195 KVIGVNVDTKGQVSN 209
                 678899999999865 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00053
     DUF3659  33 LaGkkvdedGnivdedGnviG 53 
                 + G +++e+ ++v+++G+v+ 
  CCD23154.1 440 MGGARINEKSQVVNKRGEVLA 460
                 557778888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 3504.19
//
Query:       CCD23155.1  [L=387]
Description: hypothetical protein NDAI_0B01210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-79  267.0   0.0    2.4e-79  266.7   0.0    1.1  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.7   0.0   1.3e-83   2.4e-79       1     291 [.      16     301 ..      16     303 .. 0.97

  Alignments for each domain:
  == domain 1  score: 266.7 bits;  conditional E-value: 1.3e-83
                      E-S-GGG----HHHHHHHHCS----CCCT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH-.-TTEEEEEETT-HHHHSSTTHHHHC CS
  Beta_elim_lyase   1 DLlSDsvtkgteamsdaqaaamlGdesYgedktvnrLedavaelfgkeaalfvpqGtaAnsillkill.qrgeevivtepahihfdetgaiael 93 
                      DL+SD++t++t++m++a ++a +Gd++Yged ++ +Le++va+l+gkea++f+++Gt +n+i+l+++l q+ ++++++ +ah++++e+ ++a l
       CCD23155.1  16 DLRSDTFTTPTKEMIAAAMNASIGDAVYGEDVDTVKLEQHVAKLAGKEAGIFCVSGTLSNQIALRTHLyQPPYSILCDYRAHVYTHEAAGLAIL 109
                      9*******************************************************************9************************* PP

                      C--EEEEE-EBTTTBE-HHHHHH.HS--S-T.TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHH CS
  Beta_elim_lyase  94 agvklrdlknkeaGkmdleklea.aikevga.heekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkem 185
                      ++++++++  ++  +m+le++++  i ++g+ h +++k+isl++T +   G v++leel +++a+  ++g++lh+DgAR++naa++ g+++k+ 
       CCD23155.1 110 SQAMVVPVIPSNGDYMTLEDIKShYIPDDGDiHGAPTKVISLENTLH---GIVYPLEELVRIKAWSMENGLKLHCDGARIWNAAAETGVPLKQF 200
                      ************99*********55555555****************...******************************************** PP

                      HTTSSEEEEESSSTT--SS-EEEEE-HH....HHHHHHHHHHHHT---SSTHHHHH..HHHHHHHHS.STTHHHHHHHHHHHHHHHHHCT--EE CS
  Beta_elim_lyase 186 fsyvDsvtmslkKdllanvGgvlafrddeledylaerveqrkylggglrqagvlaaleagiraleeg.laslerdhktaeqlaeklelvrlaip 278
                       + +Ds++++l+K ++a++G++l+++ +    ++++  ++rk+ ggg rq+g++a   ++++ ++ +   +l ++hk a+ la+ +e+  + ++
       CCD23155.1 201 GEIFDSISICLSKSMGAPMGSILVGNTK----FIKKCNHFRKQQGGGVRQSGMMAR--MALCNVDDDwKSKLLYSHKLAHSLADFCEKNGIPLE 288
                      ****************************....************************..9999998776999*********************** PP

                      ECCGTTCCEEEEE CS
  Beta_elim_lyase 279 rrvytqehldyva 291
                      ++++t+ ++ +++
       CCD23155.1 289 SPADTNFVFIDLR 301
                      ******9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2887.85
//
Query:       CCD23156.1  [L=252]
Description: hypothetical protein NDAI_0B01220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-53  182.2  19.4    1.5e-53  182.0  19.4    1.1  1  Isy1      Isy1-like splicing family


Domain annotation for each model (and alignments):
>> Isy1  Isy1-like splicing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0  19.4   8.6e-58   1.5e-53       1     255 []       1     249 [.       1     249 [. 0.78

  Alignments for each domain:
  == domain 1  score: 182.0 bits;  conditional E-value: 8.6e-58
        Isy1   1 MaRneEKaqsmLnRfreakaeekgllekkr..rRPklasevkslkeaekwrrqvirEIsrkvakIqdaglgeyqiRdlNDeiNkLlrekrhWekrIke. 96 
                 M+Rn +Ka+s+L+Rf+e+ka e++ +++++  +RP+++++vksl+ea +w+rqv  EI++k+++I d + ++ qiRdlNDe+N+L++e+++W+++I++ 
  CCD23156.1   1 MSRNVDKANSVLVRFQEQKAYEETNYKDYSryKRPTRVTKVKSLEEALEWKRQVQLEINNKTSRIFDITSSDRQIRDLNDELNDLIKERNRWNWHISNn 99 
                 9************************9999999****************************************************************999 PP

        Isy1  97 LgGpdykrkapkmldeegkevpgkkgyrYFGrAkeLPgVkelfekekkkeekkkkerael......fkn.idadYYGyrdeedgvlleleaeaekeare 188
                 L+G ++ ++a++  +  g ++   +g rYFGrA eLP+V+el+++ekk++e+++++ a+        k   ++ YY  r  ++  l+++e+ +  + ++
  CCD23156.1 100 LNGGTIVKNAQNKEKILGGKL--IHGVRYFGRALELPEVQELIKNEKKERESRHSKIAKYidlkriPKYtKKTLYYNSRCLRKADLENIEKFE--DHWR 194
                 ******996555555545544..39**********************665544443333356566644436789*****99999999888754..4455 PP

        Isy1 189 eavwkeekeeeeeeeekekeeeeeeeeeeeeseeekkefvalhvpvpsqeeiekallekkKkeLlek 255
                   +++  k+e+ ee++        +e++e+  +e++k+ +     +p+ +e+e++l+e+++++Lle+
  CCD23156.1 195 PILREYYKKEKIEEDT--------NETDEKGIDEGTKQLT----RIPTIKEMETWLVERRRRKLLEE 249
                 5553222211111111........1112222223333334....4*******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1498  (0.0835518); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1868.62
//
Query:       CCD23157.1  [L=549]
Description: hypothetical protein NDAI_0B01230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-89  300.6   0.0    1.7e-89  299.9   0.0    1.4  1  NAD_kinase  ATP-NAD kinase
  ------ inclusion threshold ------
      0.052   13.2   0.0       0.44   10.2   0.0    2.1  2  DAGK_cat    Diacylglycerol kinase catalytic domain
        1.9    8.3   5.3       0.23   11.3   0.9    1.7  2  Mid2        Mid2 like cell wall stress sensor


Domain annotation for each model (and alignments):
>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.9   0.0   2.9e-93   1.7e-89       2     291 ..     158     455 ..     157     456 .. 0.99

  Alignments for each domain:
  == domain 1  score: 299.9 bits;  conditional E-value: 2.9e-93
                 EEEEESSCGGTCSHHHHHHHHHHHCT-..EEEEECCGGCCSSSTT--HHHHTTTT--.......EEECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHH CS
  NAD_kinase   2 vgivvnpikkeaieraeevarwLldalsrvlevtveeklgeslaeaaefrsevisvlkkvkttddtrkaleafadagvdliivvGGDGTaldvarllqk 100
                 ++iv++ ++ +++ +++e+++w+l + + +++v+v+ +l+ s+++aa + ++++++++++ +  +++ ++ ++ d ++dl ++ GGDGT+l+v++++++
  CCD23157.1 158 LMIVTKLNDVSLYYLTRELVEWILIN-FPSITVYVDAALKDSKKFAASDIYKDSKCKESRIK--YWTPEFVDQNDVFFDLCVTMGGDGTVLFVSSIFKR 253
                 79************************.78*********************************..*********************************** PP

                 CT-EEEEEESSS--SS-SEEGGGHHHHHHHHHHT-SEEEEEEEEEEEEEETTE...............EEEEEEESSEEEEEESSSSS-EEEEEEETTE CS
  NAD_kinase 101 aeiPvlgvnaGvkgfltefepeaaaellekllegeirvekrevldavimrskgee.........diadiviensvlnevviirgpgstlielelyvdte 190
                 +++P+l++++G++gflt+f++e++++ l+k+l  +i++++r++l++ +++++++e         ++ +++++++vlnev+i+rgp +++++lely +++
  CCD23157.1 254 HVPPILSFSLGSLGFLTNFKFENFRQDLKKILSSKIKTNLRMRLECNLYKRHEPEfdpktgkkiCVVELISTHHVLNEVTIDRGPSPFISMLELYSEDN 352
                 *************************************************************************************************** PP

                 EEEEEEESEEEEE-TGGGGTHHHHTT--EE-TT---EEEEEESESSS----EEE-TT-EEEEEE-..SS--EEEEETTTEEEEE-TT-EEEEEEESSEE CS
  NAD_kinase 191 lleadqldglivstPtGstayslsaGgplisPgvlailivpicPhslssrpiVvssssklrirva..srseallaldGseelelspgdevrvtasdkkf 287
                 l+++ q+dgli++tPtGstayslsaGg+li P+v+ai+++picPh+ls+rpi++++s++l+++v+  sr +a++ +dG++++el++gd ++++as++ f
  CCD23157.1 353 LMTVAQADGLIIATPTGSTAYSLSAGGSLIYPTVNAIAVTPICPHTLSFRPIILPESMTLKVKVStkSRGTAWASFDGKDRVELQKGDFIKISASPYFF 451
                 ******************************************************************9******************************99 PP

                 EEEE CS
  NAD_kinase 288 klir 291
                  +++
  CCD23157.1 452 PTVE 455
                 8886 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.4e-05      0.44      56      93 ..     232     266 ..     203     294 .. 0.77
   2 ?   -0.0   0.0       0.1   6.2e+02      94     119 ..     463     489 ..     462     496 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.4e-05
                 -SEEEEEESHHHHHHHHHHHCTHHCTTSEEEEEE-SS- CS
    DAGK_cat  56 vdlivvaGGDGtvsevlnglleelatkpplgiiPlGtg 93 
                 +dl v +GGDGtv  v + + +   + pp+  + lG+ 
  CCD23157.1 232 FDLCVTMGGDGTVLFVSSIFKR---HVPPILSFSLGSL 266
                 5899*********999998888...9999999999986 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.1
                 -HHHHHCT--S.SHHHHHHCHHCTBEE CS
    DAGK_cat  94 Ndlaralgigk.dieealesiikgetr 119
                 N+++r+l++++ + +++l ++++++ +
  CCD23157.1 463 NSISRTLNWNQrEQQKSLTHMLSRKNQ 489
                 999********8777777777666554 PP

>> Mid2  Mid2 like cell wall stress sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       1.2     7e+03     123     141 ..      37      55 ..      18      68 .. 0.53
   2 ?   11.3   0.9   3.9e-05      0.23      72     146 ..     453     526 ..     442     532 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.2
        Mid2 123 sddeeldlakaenndeslt 141
                 +dd++ ++++ +nn + ++
  CCD23157.1  37 TDDDDYHHHSKRNNYSPSQ 55 
                 3333334434444333333 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 3.9e-05
        Mid2  72 CikskrtdfidsdGkvitaYktnkltklwkallGkkiteeyesdsPlGsslsddeeldlakaenndesltvevkn 146
                  ++ ++t+fi+s  + +  +++ + +k  + +l +k++e+y +++ + +++++ +++  +++e+ d++ + ++ +
  CCD23157.1 453 TVECSNTEFINSISRTLN-WNQREQQKSLTHMLSRKNQEKYATEAKVIKHQNNSDSSYIEEVEKCDDTDSETAAD 526
                 578899*********986.5566668888899999999********99877777777666666544444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1435  (0.0800379); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 3979.23
//
Query:       CCD23158.1  [L=112]
Description: hypothetical protein NDAI_0B01240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-11   44.0   0.1    7.8e-11   43.0   0.1    1.5  1  Cytochrom_C      Cytochrome c
      2e-06   28.0   1.0    9.8e-06   25.8   1.0    1.9  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
      0.078   12.7   2.1       0.75    9.5   2.0    2.1  1  Cytochrom_C550   Cytochrome c-550 domain


Domain annotation for each model (and alignments):
>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.1   1.3e-14   7.8e-11       2      90 ..      13     109 ..      12     110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.3e-14
                  --HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--S..........SSHHHHHHHGGGGGGG.TT--HHHHHHHHHHHH CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsap..........rddfekkkltaemparkerlteqeiadlaaYLk 89 
                  ++G++lf++ C +CH+ve+gg ++  gp+l g+  r+s++  g s+++ + ++              +++k+ ++++m       +e++++dl+ YLk
   CCD23158.1  13 KKGATLFKTRCLQCHTVEEGGPHKV-GPNLHGIFGRRSGQAVGYSYTDANIKKNVewnvnnmseyLTNPKKYIPGTKMAFG-GLKKEKDRNDLITYLK 108
                  69*****99***********99877.9****************99999987777766666666666666666666665543.66778**********9 PP

                  T CS
  Cytochrom_C  90 s 90 
                  +
   CCD23158.1 109 K 109
                  6 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   1.0   1.6e-09   9.8e-06       4      67 .]      13     107 ..      10     107 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.6e-09
  Cytochrome_CBB3   4 aaGaalykknCasCHg.....kggagpsla...grdwep......................dalvdiiknGkgaMp....afggqlsdeelwal 63 
                      ++Ga l+k  C +CH+     ++++gp+l+   g   +                         + ++++n k+  p    afgg  +++++++l
       CCD23158.1  13 KKGATLFKTRCLQCHTveeggPHKVGPNLHgifG---RRsgqavgysytdanikknvewnvNNMSEYLTNPKKYIPgtkmAFGGLKKEKDRNDL 103
                      78**************764444466677774441...2112335555566666655555555555566666655555555999999******** PP

  Cytochrome_CBB3  64 vaYl 67 
                      ++Yl
       CCD23158.1 104 ITYL 107
                      **97 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.0   0.00013      0.75      27      43 ..      13      29 ..       5      99 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00013
                    HHHHHHHHHHTHHHHGG CS
  Cytochrom_C550 27 kkgkklFeaeCaqCHvg 43
                    kkg  lF++ C qCH+ 
      CCD23158.1 13 KKGATLFKTRCLQCHTV 29
                    7899***********73 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 806.27
//
Query:       CCD23159.1  [L=446]
Description: hypothetical protein NDAI_0B01250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-109  365.4   0.0   2.6e-109  364.7   0.0    1.3  1  Anp1      Anp1


Domain annotation for each model (and alignments):
>> Anp1  Anp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.7   0.0  1.4e-113  2.6e-109       2     263 ..      55     315 ..      54     316 .. 0.99

  Alignments for each domain:
  == domain 1  score: 364.7 bits;  conditional E-value: 1.4e-113
        Anp1   2 vekydlnklestadaaenkekvLiltplrdaekflpeyfenllkltyphelidLaflvsdtsegdktlealeeelkklqkkkkk.krfrsitilekdfg 99 
                 ve yd++++++++d++++++++Li++pl+da++ lp +f++l+k+typhelidL+flvsd+s  d+t+ +l + lk+lq ++ +  +f +i+i+ekdfg
  CCD23159.1  55 VEFYDMSNYQGHKDGWNQNNRILICVPLKDASNALPLFFKTLEKMTYPHELIDLSFLVSDSS--DNTMYNLLNMLKRLQIDGGTsGKFGNIEIYEKDFG 151
                 899***********************************************************..***************999999************** PP

        Anp1 100 ekisqsesdrhkvevqklRRklmaraRNsLlssaLkpehswvlwlDaDivetpktliedlishdkdvivpnvlrklpdelekeqpYDlnsWveseeale 198
                 + i+q++sdrh +++q++RRklm++aRN+L + a+kp+hswv+w+D+D++  p+t++edl++hdkdvivpnv+r+lpd+l+++qpYDlnsW ese++l+
  CCD23159.1 152 QVIGQGFSDRHGFAAQGPRRKLMGKARNWLNTVAIKPYHSWVYWRDVDVEIIPETILEDLMHHDKDVIVPNVWRPLPDWLGNIQPYDLNSWKESEAGLA 250
                 *************************************************************************************************** PP

        Anp1 199 lakkldeddvivegyaelatkrvhlaklrdengdpeeeveLDgVGgvsilvkaevfrqGamFpaf 263
                 l ++l+ed vivegy e+at+r hla++rd+ngdpe+e+eLDgVGgvsil ka+vfr+G +Fpaf
  CCD23159.1 251 LSNSLGEDAVIVEGYPEYATWRSHLAYMRDPNGDPEREMELDGVGGVSILSKANVFRSGSHFPAF 315
                 ****************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3127.88
//
Query:       CCD23160.1  [L=158]
Description: hypothetical protein NDAI_0B01260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-29  100.9   0.5    4.1e-29  100.5   0.5    1.2  1  eIF-5a    Eukaryotic elongation factor 5A hypusine, DNA-bindi
     0.0019   18.2   0.1     0.0029   17.6   0.1    1.3  1  EFP_N     Elongation factor P (EF-P) KOW-like domain
  ------ inclusion threshold ------
      0.023   14.5   0.1      0.084   12.6   0.0    1.8  2  TgMIC1    Toxoplasma gondii micronemal protein 1 TgMIC1


Domain annotation for each model (and alignments):
>> eIF-5a  Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.5   6.9e-33   4.1e-29       1      69 []      85     152 ..      85     152 .. 0.99

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 6.9e-33
                 --EEEEEEEEEE-SS.EEEEEETT--EEE.EEGG..GB-HHHHTT--TT-E..EEEEEETTEEEEEEE- CS
      eIF-5a   1 nVkrkeyqLidIqdDgflsLmdddgetkeDlklpegelgkqikekfeegkdvlVtVlsamGeekiiavK 69 
                 +Vkr+eyqL+dI dDg+lsLm+ dgetk+D+k  egelg+ ++++f+egkd++Vt++samGee++i++K
  CCD23160.1  85 FVKRTEYQLLDI-DDGYLSLMTMDGETKDDVKSAEGELGDSMQAAFDEGKDLMVTIISAMGEEAAISFK 152
                 7***********.8*****************************************************98 PP

>> EFP_N  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   4.8e-07    0.0029       3      32 ..      25      54 ..      23      73 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.8e-07
                GG--TT-EEEETTEEEEEEEEEEEEETTS- CS
       EFP_N  3 selkkGlvieidgklyvVlefehvkpGkGq 32
                s l+kG ++ i+g ++++++   +k Gk +
  CCD23160.1 25 SALRKGGFVVIKGRPCKIVDMSTSKTGKHG 54
                679************************854 PP

>> TgMIC1  Toxoplasma gondii micronemal protein 1 TgMIC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.3   1.8e+03      42      61 ..      96     115 ..      91     120 .. 0.79
   2 ?   12.6   0.0   1.4e-05     0.084       5      26 ..     121     142 ..     119     151 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.3
      TgMIC1  42 fldyylkfdttsksasdvve 61 
                   d+yl++ t    + d v+
  CCD23160.1  96 IDDGYLSLMTMDGETKDDVK 115
                 6799**99999988888876 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 1.4e-05
      TgMIC1   5 iGdslkatleeGqqltltyist 26 
                  Gds++a ++eG+ l++t is+
  CCD23160.1 121 LGDSMQAAFDEGKDLMVTIISA 142
                 59******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1166.50
//
Query:       CCD23161.1  [L=450]
Description: hypothetical protein NDAI_0B01270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-24   85.0   0.3    3.6e-24   85.0   0.3    2.8  3  PWWP            PWWP domain
  ------ inclusion threshold ------
       0.55    8.9   2.2       0.59    8.8   2.2    1.1  1  Ndc1_Nup        Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> PWWP  PWWP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.3     4e-28   3.6e-24       1      93 [.      10     137 ..      10     140 .. 0.97
   2 ?   -2.4   0.1      0.73   6.5e+03      69      82 ..     159     172 ..     152     195 .. 0.58
   3 ?    1.4   0.9     0.047   4.2e+02      55      82 ..     214     242 ..     176     264 .. 0.79

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 4e-28
                 SSTTEEEEEEESSSEEEEEEEEECCCCCCCCHCT---SSS...................................EEEEEETTTTEEEEE-GGGEEE-S CS
        PWWP   1 fqpgdlvwakvkgypwWPavvidpeevpekvlkkkekske...................................lylVkFfgdkeyawvkekdlkpft 64 
                 +qp+d+v+akvkg+++WPa++++ e +pe++l+++ ++ e                                   +y+VkFf d++y+wvk++dlk +t
  CCD23161.1  10 YQPTDIVLAKVKGFSAWPAMIVPTELIPEHILRTNTHTDEesetedntdtqdaddtkfihyskllkfrkfeqlknSYCVKFFCDDSYIWVKPSDLKLLT 108
                 79*****************************9988877778999******************************************************* PP

                 HHHHHHHHHTTSS-HHHHHHHHHHHHHHH CS
        PWWP  65 eedeeeylkkkkkkkskkkfkkAleeaee 93 
                  e+++e+lk+ +kkk++kk+  A+e+a +
  CCD23161.1 109 VEQCREWLKSTNKKKKNKKLIPAYEMASK 137
                 **************************987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.73
                 HHHHHTTSS-HHHH CS
        PWWP  69 eeylkkkkkkkskk 82 
                 +ey+++++++++++
  CCD23161.1 159 DEYVEEQEEEQEEQ 172
                 45555544444333 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.047
                 E.-GGGEEE-SHHHHHHHHHTTSS-HHHH CS
        PWWP  55 v.kekdlkpfteedeeeylkkkkkkkskk 82 
                 v +ek+++p ++++eee+l+++  kk++ 
  CCD23161.1 214 VkEEKQVEPVEKGEEEEQLEEVLPKKRRG 242
                 325778************99999887644 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.2   6.6e-05      0.59     363     467 ..     166     295 ..     109     414 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 6.6e-05
    Ndc1_Nup 363 s....kapknkasapvkelprlsksplkkkddeifgnsltaeaspkssssskegvekalsslakspgqs....psptarls.......prarkllekak 446
                 +    +++++++ ++ ++++r+++s +kk     ++++ +++++p+  s++  + ek++ ++ k   ++                   p    + + ++
  CCD23161.1 166 EeeqeEQEEEEEVPKTTASIRSTRSRNKK----TIAKKVMTKPKPRTRSKHVVKEEKQVEPVEKGEEEEqleeV------LpkkrrgrP----ASK-SA 249
                 01111233333444444444444443333....34433333444444444444555555555555554444321......133322332....222.22 PP

    Ndc1_Nup 447 srllskeqkealsestikkk.........................v 467
                 +++ +k+qk + +e+++k +                         v
  CCD23161.1 250 TKTTTKKQKLKVKEESPKIEeynyeddedwalvglgpqdvtiqdnV 295
                 2222233444444444444444555556666666666666654441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2036  (0.113559); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 3253.93
//
Query:       CCD23162.1  [L=291]
Description: hypothetical protein NDAI_0B01280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-21   74.2   0.2    6.6e-21   73.5   0.2    1.3  1  SRF-TF          SRF-type transcription factor (DNA-binding an
  ------ inclusion threshold ------
      0.097   13.7  14.0       0.19   12.7   5.4    2.6  2  Spt5_N          Spt5 transcription elongation factor, acidic 
       0.29   10.8  15.3       0.44   10.2  15.3    1.2  1  CAC1F_C         Voltage-gated calcium channel subunit alpha, 
       0.45   10.7   8.7        6.1    7.0   3.4    2.3  2  CPSF100_C       Cleavage and polyadenylation factor 2 C-termi


Domain annotation for each model (and alignments):
>> SRF-TF  SRF-type transcription factor (DNA-binding and dimerisation domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.2   1.5e-24   6.6e-21       1      48 []      27      74 ..      27      74 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 1.5e-24
      SRF-TF  1 kIeneraRqvtFsKRrnGLfKKAsELsvLcgvevavvvfspngklytf 48
                +Ien+++R+vtFsKR+ G++KKA ELsvL+g++v ++v+s++g +ytf
  CCD23162.1 27 FIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF 74
                6**********************************************9 PP

>> Spt5_N  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   5.4   4.2e-05      0.19       9      65 ..     100     155 ..      97     168 .. 0.68
   2 ?    5.6   1.4    0.0069        31      36      61 ..     222     247 ..     188     281 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.2e-05
                 XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      Spt5_N   9 dddeeeeeeeeeveggeddfiaeeeaeeeeedserddrshreldrrrqaeededaee 65 
                 d++eeeeeee e e+ +d  i+++ ae   ++  ++d s r+   + +++  +d  +
  CCD23162.1 100 DEEEEEEEEEGEEEDNNDH-ITNQGAEILGSSITEQDPSARHNSTSSMTNIGMDSMN 155
                 5665555555555555555.9998888888887777777777777777766666554 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0069
                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
      Spt5_N  36 eeeedserddrshreldrrrqaeede 61 
                 +++ +++++++++++ +++rq+++++
  CCD23162.1 222 QPTTQQQQQEQQQQHIQQQRQQQQQQ 247
                 22222333333333333333333322 PP

>> CAC1F_C  Voltage-gated calcium channel subunit alpha, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  15.3   9.8e-05      0.44      17     156 ..      96     253 ..      85     286 .. 0.37

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.8e-05
     CAC1F_C  17 laedleeeeeeaeleeeeedleasaap......kaelesqpesrrssavsvsltv.eeelpdslsapsddrgvs........skissrkpsvkqslsse 100
                 l+  +eeeeee+e++eee++ ++ +++       + +e +p++r++s+ s  + +  ++++   s      g +                +++q + + 
  CCD23162.1  96 LNAPDEEEEEEEEEGEEEDNNDHITNQgaeilgSSITEQDPSARHNSTSSM-TNIgMDSMNAINSMKQAIAGSTnamvppgqL-----PLQMQQVGMKR 188
                 555444444444433333333333222235775555566666666666654.3332333333332222222222122222221.....22333333333 PP

     CAC1F_C 101 tkrsskvevltedsegsaklkae.........vsgekglekqeeeeeevvssekraaldeqaett 156
                 + +s+++++ +++ + s+ + ++          ++++ +++qe+++++++++++++++++ +  t
  CCD23162.1 189 EGNSNNMTIGQTSVVSSSGTLGNqfstqnqqqLQPTTQQQQQEQQQQHIQQQRQQQQQQQGNPAT 253
                 33333333333333333222222100001111333333333333333332222222222222111 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2    0.0015       6.8      38      81 ..     100     145 ..      47     174 .. 0.54
   2 ?    7.0   3.4    0.0014       6.1      18      71 ..     199     251 ..     175     282 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0015
   CPSF100_C  38 eeeekeeeeeeeeeeeeeeeaskkqkl.....aeksekeaseeeseekk 81 
                 +eee+eeeee eee+++++ +++  +      +   e++ s++++++++
  CCD23162.1 100 DEEEEEEEEEGEEEDNNDHITNQGAEIlgssiT---EQDPSARHNSTSS 145
                 233333333333333333333333333553321...2222222222222 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0014
   CPSF100_C  18 glevatvtgeleieeeaeeaeeeekeeeeeeeeeeeeeeeaskkqklaekseke 71 
                 +++v+  +g l  +  +++++++ + +++++++e+++++ ++++q++++++ ++
  CCD23162.1 199 QTSVVSSSGTLGNQF-STQNQQQLQPTTQQQQQEQQQQHIQQQRQQQQQQQGNP 251
                 456666666665222.12222222222222222222222222222221222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3625  (0.202186); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.40
# Mc/sec: 2209.61
//
Query:       CCD23163.1  [L=251]
Description: hypothetical protein NDAI_0B01290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-21   74.3   0.1    6.1e-21   73.6   0.1    1.4  1  SRF-TF         SRF-type transcription factor (DNA-binding and
  ------ inclusion threshold ------
       0.19   11.9   3.3       0.47   10.6   0.5    2.0  2  AJAP1_PANP_C   AJAP1/PANP C-terminus
       0.36    8.9  15.6       0.51    8.4  15.6    1.3  1  DNA_pol_phi    DNA polymerase phi
        0.4   10.3  11.3       0.57    9.8  11.3    1.2  1  DUF5523        Family of unknown function (DUF5523)
        1.2    7.3  18.9        1.5    6.9  18.9    1.0  1  Nop14          Nop14-like family
        4.6    6.4  12.6        4.2    6.5   0.7    2.1  2  SLAIN          SLAIN motif-containing family
          6    5.0   7.8        7.1    4.8   7.8    1.2  1  CDC45          CDC45-like protein
        6.4    6.0  19.8        8.4    5.6  19.8    1.1  1  BUD22          BUD22


Domain annotation for each model (and alignments):
>> SRF-TF  SRF-type transcription factor (DNA-binding and dimerisation domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.1   2.7e-24   6.1e-21       1      48 []     164     211 ..     164     211 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 2.7e-24
      SRF-TF   1 kIeneraRqvtFsKRrnGLfKKAsELsvLcgvevavvvfspngklytf 48 
                 +Ien+++R+vtF KRr G++KKA+ELsvL+g++v +++ s++g +ytf
  CCD23163.1 164 FIENKSRRHVTFAKRRHGIMKKAYELSVLTGANVLLLILSSSGLVYTF 211
                 6**********************************************9 PP

>> AJAP1_PANP_C  AJAP1/PANP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   0.00021      0.47      11      59 ..      13      63 ..       6      90 .. 0.66
   2 ?    1.8   0.1       0.1   2.3e+02      10      57 ..     105     153 ..      97     191 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
  AJAP1_PANP_C 11 svddesktvpnitlstkas..rtttvatttstttrltqrtltvvttpeprr 59
                    d+e +++  +    ++s  +  t+++t++ttt++ +++++ v ++ep +
    CCD23163.1 13 RNDNEYDQSKKMKIVDTISkeQIGTATATATTTTKSVTNAVSFVNQNEPVE 63
                  444444444333333333322556777777888899999999999998864 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
  AJAP1_PANP_C  10 dsvddesk.tvpnitlstkasrtttvatttstttrltqrtltvvttpep 57 
                   +  +de++  v    +s + s +++ at++   t ++ rt +v   p++
    CCD23163.1 105 EEEEDEDEeDVAIDSESYRESSASVPATSVDKVTLTNARTPSVPESPRS 153
                   3333333303333344555555666666666666666666666655533 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  15.6   0.00023      0.51     611     684 ..      28     116 ..      17     142 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00023
  DNA_pol_phi 611 sevteegLellldvLearenkegqaelfedededeeddeeeeeeddeededseeddde...............eesdedeededdedvd 684
                  + +++e++   ++  +++ +   +a  f +++e  e ++ee++ +de++ed + +++e               +e+de+eeded+edv+
   CCD23163.1  28 DTISKEQIGTATATATTTTKSVTNAVSFVNQNEPVEGENEEDDYEDEDEEDISLNKEElsgnlggldegegggKEEDEEEEDEDEEDVA 116
                  566666666666666666676777778899999999999999999999999997777788999***99999987777777777777775 PP

>> DUF5523  Family of unknown function (DUF5523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  11.3   0.00026      0.57      22     129 ..      10     118 ..       2     137 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00026
     DUF5523  22 ekeekedesklssrvkfkdaakkvksksqvekglptaeeaynfftfnfdpepeeseekkkkkekeekeeeeeegeee........eeeeeeeeeeeeek 112
                 e+e +++e   s+++k+ d+  k++  + + ++  t++   n + f  ++ep e e+++++ e+e++e+ + ++ee         e e + +ee+eee+
  CCD23163.1  10 EDERNDNEYDQSKKMKIVDTISKEQIGTATATATTTTKSVTNAVSFVNQNEPVEGENEEDDYEDEDEEDISLNKEELsgnlggldEGEGGGKEEDEEEE 108
                 3344555688999************999999999999999***********999777777777666666664444443445444333333332333333 PP

     DUF5523 113 deeellvkkeeeeflld 129
                        +++ee++ +d
  CCD23163.1 109 -------DEDEEDVAID 118
                 .......3344444444 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  18.9   0.00067       1.5     296     445 ..       9     162 ..       3     179 .. 0.31

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00067
       Nop14 296 geedeeeeeekkkkkkke...asaDdldddfvleeeeeeeefglgkglka.............taeeeeeededdfeedddlveseseeee..eeeeed 376
                  e++ +++e +++kk+k    +s ++ +    +++ ++++                       +    +e++edd e++d+++ s ++ee   +  + d
  CCD23163.1   9 NEDERNDNEYDQSKKMKIvdtISKEQIGTATATATTTTKS---------VtnavsfvnqnepvE----GENEEDDYEDEDEEDISLNKEELsgNLGGLD 94 
                 3333333333333333313333333333332222222222.........022344444323321....3333333333322222222222233233333 PP

       Nop14 377 eeeeedeeeee.eeeededdlsdleseeeeeedeleeel..leeekkaaeekkekkkkkkkseekakeelpy 445
                 e e   +ee+e ee+ede+d       ++e+  e + +   +  +k + +++++ +  ++  ++++k+++p 
  CCD23163.1  95 EGEGGGKEEDEeEEDEDEEDVAI----DSESYRESSASVpaTSVDKVTLTNARTPSVPESPRSSSSKQKIPI 162
                 32222222222111111111111....111222211111111111212222222223334444444555554 PP

>> SLAIN  SLAIN motif-containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.7    0.0019       4.2     153     197 ..      38      82 ..      31      91 .. 0.66
   2 ?    4.8   5.1    0.0061        14     179     242 ..     101     168 ..      89     190 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0019
       SLAIN 153 astsasasrrsssaSlqslrrgtlsdqeldaysledeeeeydslp 197
                 a+++a+ + +s + +++ + +    + e ++++ ede+ee  sl 
  CCD23163.1  38 ATATATTTTKSVTNAVSFVNQNEPVEGENEEDDYEDEDEEDISLN 82 
                 445588889998888888887555555555556666666655554 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0061
       SLAIN 179 qeldaysledeeeeydsl..pqprltrfsplqrg...lphsstfsSprdsrrsrsPstsqeys.srlsqq 242
                 +e+d+++ +++ee++     ++++ +   p ++    +     + S+ +s+rs+s+   q++  s ++++
  CCD23163.1 101 KEEDEEEEDEDEEDVAIDseSYRESSASVPATSVdkvTLTNARTPSVPESPRSSSSK--QKIPiSFIENK 168
                 445544333333333222245555444444322211133344556888899994444..44433444443 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   7.8    0.0032       7.1     119     196 ..      67     151 ..      10     205 .. 0.46

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0032
       CDC45 119 ereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee.sddddersrkrrrse..................... 195
                 e+++ye  +ee+                  + ++ee +++    de e + k++++++e+e+ +d + ++++ r+ s                      
  CCD23163.1  67 EEDDYEDEDEEDI-----------------SLNKEELSGNLGGLDEGEGGGKEEDEEEEDEDeEDVAIDSESYRESSAsvpatsvdkvtltnartpsvp 148
                 1222222111111.................111222222222222222222222222222221111112222222222344444444444444333333 PP

       CDC45 196 ..p 196
                   p
  CCD23163.1 149 esP 151
                 330 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  19.8    0.0037       8.4     155     265 ..      26     146 ..       2     169 .. 0.28

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0037
       BUD22 155 kkkkkkkeeee..........eeesdkeeesedsed.........eekeeseddeeeeeededdedaeedeedeeaeerelaqydglla........sd 226
                   +                  ++++                     +++e  + e+ee++ e ded+e+ + ++e+ + +l  +d+  +        ++
  CCD23163.1  26 IVD-------TiskeqigtatATATTT--------TksvtnavsfVNQNEPVEGENEEDDYE-DEDEEDISLNKEELSGNLGGLDE--GegggkeedEE 106
                 111.......12211222222111111........012222333422222222222222222.22222222233333333333333..13334432212 PP

       BUD22 227 dededeyneetdeesseesdssdssesasesesessek.........k 265
                 +edede++   d+es +es+ s +  s +        k         +
  CCD23163.1 107 EEDEDEEDVAIDSESYRESSASVPATSVD--------KvtltnartpS 146
                 22222222223333333333333333322........12222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1365  (0.0761336); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 1752.41
//
Query:       CCD23164.1  [L=333]
Description: hypothetical protein NDAI_0B01300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-46  156.3   0.0    1.1e-45  156.1   0.0    1.1  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1   0.0   6.2e-50   1.1e-45       1     276 [.       6     281 ..       6     305 .. 0.92

  Alignments for each domain:
  == domain 1  score: 156.1 bits;  conditional E-value: 6.2e-50
                   .EEEE-SSS-ST.TS-HHHHHHH...HHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH..-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHH CS
  Aldo_ket_red   1 elglGtwqlgskeeiskeealel...lrraleaGinffDtAevYgkgqseellGealkk..srkkreeviiatKvdlrdaeiksglskenireslee 92 
                   +l++G+++++ + ++s++e+l +   lr+a+ +G+n++Dt+++Y  g se+l+G+alk+  ++++re++ i+tKv +r++  ++++ske+++ s+++
    CCD23164.1   6 PLIVGGGTFSEQ-YNSDPESLPIseiLRYAFTNGVNAIDTSPYY--GDSEILIGKALKElsDEFPRESYSICTKV-GRISLDSFDYSKEHVEFSVRR 98 
                   699*******98.*******988888******************..*****************************.********************* PP

                   HHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHH...TTSEEEEEEES--HHHHHHH.........HHTTT--EEEEE-B-BTT-HHHHTTHHH CS
  Aldo_ket_red  93 slkrLgtdyvDllllHrpdpslpsieevldaleelvk...eGkiraiGvSnfsveqleka.........kkkkkvkivavqveynllreleeeglle 177
                   s++rL+t y+Dl++lH++++  p +e++l al el++    G+i+ +G+S+++v  l ++            ++++++ ++ + nl+ ++   ++++
    CCD23164.1  99 SCERLNTTYLDLVYLHDVEFV-P-LEDTLIALRELRRlkdIGLIKRFGLSGYPVHYLYEVtrkcateyvDDIGPLDAILSYCNLNLQ-NVVLDNYYD 192
                   *******************96.5.69999888777776669****************999999999888888999999999999999.777778888 PP

                   HHHHT.T-EEE.EBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTS.TT-SEEEE--SSHHHHH CS
  Aldo_ket_red 178 lckkk.gvpli.aysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsq.pavgivipgasnieqle 271
                    +k++ ++++i ++s+l++ ll+++++   ++++k             + +d+a+++ + ++++g++l+ la rya+s+  ++g +++g+s++e++ 
    CCD23164.1 193 KLKNEcKIGIIsNASILSMSLLREQETVAFHPCSK-------------ELRDCADKAADHCQSKGMKLSDLATRYAVSKwIGKGPTVIGVSSVEEMA 276
                   888877*****************999999998865.............4569*************************998899************99 PP

                   HHHGG CS
  Aldo_ket_red 272 dnlda 276
                   + ++ 
    CCD23164.1 277 TAIRN 281
                   87765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2590.85
//
Query:       CCD23165.1  [L=179]
Description: hypothetical protein NDAI_0B01310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-22   78.7   7.1    4.5e-22   78.4   7.1    1.1  1  Bap31     Bap31/Bap29 transmembrane region
  ------ inclusion threshold ------
       0.13   12.6   0.1       0.55   10.6   0.0    1.9  2  MBT       mbt repeat


Domain annotation for each model (and alignments):
>> Bap31  Bap31/Bap29 transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   7.1     5e-26   4.5e-22       1     132 [.       1     131 [.       1     134 [. 0.91

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 5e-26
       Bap31   1 msLqytlvaalLvaeivvvllLvlPlpsavrkklfksllvsklsaklqialkillifllllflDavrrvrkvseeeeeaaaklkleaesevqarkFyaQ 99 
                 ms++  ++++ L++e++++++LvlPlp+++r+ +f++    + s +++++  i+ +++ +lf+D+ +r +    +++++  + ++ +  +  a++ y Q
  CCD23165.1   1 MSIYLLIIFFSLIMEMTILFILVLPLPFSIRRLFFSLFERATKSMQVRTISSIFGLLVSFLFYDSRKRSMVHVLTYQDD-VSGQNVTPIHALASRAYHQ 98 
                 9****************************************************************98855444444444.467788899999******* PP

       Bap31 100 RNlYlsGftLfLslvlrrlvtliselakleakl 132
                 RN+YlsGf+L+  + + +++t++ +l+k+++++
  CCD23165.1  99 RNMYLSGFILYFGVCIATVMTILGKLVKVHDDM 131
                 ***************************998876 PP

>> MBT  mbt repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.23   2.1e+03      13      33 ..      44      64 ..      39      89 .. 0.65
   2 ?   10.6   0.0   6.1e-05      0.55      14      33 ..     112     131 ..     109     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.23
         MBT 13 licvAtVvkvlgrrllvrfdg 33
                +++v t+  ++g ++   f +
  CCD23165.1 44 SMQVRTISSIFGLLVSFLFYD 64
                667778888887666555533 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 6.1e-05
         MBT  14 icvAtVvkvlgrrllvrfdg 33 
                 +c+AtV+ +lg++++v+ d 
  CCD23165.1 112 VCIATVMTILGKLVKVHDDM 131
                 8***************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1415.78
//
Query:       CCD23166.1  [L=299]
Description: hypothetical protein NDAI_0B01320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-22   77.5   0.1    9.6e-22   76.4   0.1    1.6  1  PC4       Transcriptional Coactivator p15 (PC4)
  ------ inclusion threshold ------
          2    7.1   9.0        2.3    6.9   9.0    1.1  1  DUF4551   Protein of unknown function (DUF4551)


Domain annotation for each model (and alignments):
>> PC4  Transcriptional Coactivator p15 (PC4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.1   1.1e-25   9.6e-22       1      52 []      42      95 ..      42      95 .. 0.95

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.1e-25
                ECTTCCEEEEEEEETTEEEEEEEEEEEC.T.TEEEEEEEEEEEEHHHHHHHHHH CS
         PC4  1 welskkrrvtvrefkGktlvdIReyyek.d.gelkPgkKGIsLtleqweaLkka 52
                ++l+k++rvtvr+f++ +l+dIReyy +   ge+kPgkKGIsLt++ +++L+k+
  CCD23166.1 42 FDLGKNKRVTVRQFRNINLIDIREYYLDsSsGEMKPGKKGISLTEDLYDELLKH 95
                589************************9659********************985 PP

>> DUF4551  Protein of unknown function (DUF4551)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   9.0   0.00026       2.3     119     213 ..     108     216 ..      48     288 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00026
     DUF4551 119 fkvspskasekksrressgaa.kkssslnessldakekeektvskksqlslslselrklseeekeelesekalks.lrsasrplPesl.lsrapkpp.. 212
                 +k+  +k+ +  s  e +  + ++ s+ n +++d+k++e+k +sk++q++  +s+ rk ++++  ++++ +  +   ++a r +P ++ l  + ++   
  CCD23166.1 108 SKRPRTKTVRVLSDDEDEEDNdNNASNNNTANVDSKTNEQKDGSKEKQTKDGDSKDRKREKNKDSNKNKYEDYSDsEPKAKRKKPAPPtLLPHEENRen 206
                 333333333333333333233122333444445888889999999999998988888888887777776665554378888888888865555533322 PP

     DUF4551 213 .........s 213
                           
  CCD23166.1 207 akreanatlI 216
                 2222222220 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2143  (0.119527); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.35s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 1896.36
//
Query:       CCD23167.1  [L=262]
Description: hypothetical protein NDAI_0B01330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-07   32.0   0.1    2.8e-07   30.9   0.1    1.6  1  HMA       Heavy-metal-associated domain
     0.0017   18.5   0.0     0.0077   16.4   0.0    1.9  1  Sod_Cu    Copper/zinc superoxide dismutase (SODC)


Domain annotation for each model (and alignments):
>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.1   3.1e-11   2.8e-07       2      62 .]      24      84 ..      23      84 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 3.1e-11
         HMA  2 vrvsgmhCagCaakvekvLsel....pgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62
                +++ +mhC++C+++++k L e+    + V+++k++l+++ +  +  +++   + +i++++++gy+
  CCD23167.1 24 YAI-PMHCENCSNDIKKCLIEHipqsEKVKDIKFNLEEQIMALNSAIAP---SVVIKTLRSCGYD 84
                677.9**************9986555677********************...************7 PP

>> Sod_Cu  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.6e-07    0.0077       6     123 ..     116     216 ..     111     232 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.6e-07
                 EEEEEEEEEEECSTTSTCEEEEEEEECSS-STEEEEEEEESSTTTTTTTGGG-SB-STT-.CSSTTTTTCS-TTEEEEEEESTTSEEEEEEEEESC.BC CS
      Sod_Cu   6 gevsGtvtftqeeskesgsvevtvevkglppggkhgfHiHengdcsagfksagghfnptgkkhgapndeerhaGDLgnievdadgtakleittdklvsl 104
                 + v+G v++ q ++   +++ ++++v+g+p++gk+     e gd+s+g++s+g++ ++++++ +      ++  DL     +  g+  l    ++ +++
  CCD23167.1 116 SPVRGLVRIVQVSD---NKTLFDFNVNGVPRPGKYFATLRECGDLSNGVESTGKVMKKFEEPIEC-----KEQSDLDPKLFS--GQLFL----SSPIQV 200
                 5799******9883...4699*********8889**********************998877773.....678999833332..43333....344677 PP

                 STTTBCTTEEEEEESS--- CS
      Sod_Cu 105 kgensilgralvihagaDd 123
                     +++gr++vi +++ +
  CCD23167.1 201 W---ELIGRSIVISKEKEN 216
                 6...799999999987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1941.58
//
Query:       CCD23168.1  [L=769]
Description: hypothetical protein NDAI_0B01340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-11   42.2  12.5    1.7e-05   25.0   4.0    2.8  2  zf-C2H2      Zinc finger, C2H2 type
    4.2e-09   36.5  12.4    0.00042   20.9   3.8    2.7  2  zf-C2H2_4    C2H2-type zinc finger
    1.4e-06   28.4  18.9    1.3e-05   25.4   3.3    3.5  3  zf-H2C2_2    Zinc-finger double domain
    0.00099   19.3  12.0     0.0085   16.4   4.0    2.8  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
     0.0066   16.7   4.5      0.013   15.8   4.5    1.5  1  zf-Di19      Drought induced 19 protein (Di19), zinc-binding
  ------ inclusion threshold ------
      0.011   16.1   8.2      0.034   14.6   2.0    3.2  2  zf-met       Zinc-finger of C2H2 type
      0.018   15.1  11.4      0.023   14.7   0.8    3.0  2  zf-BED       BED zinc finger
      0.038   14.4  11.1       0.65   10.5   0.9    3.0  2  zf-C2HE      C2HE / C2H2 / C2HC zinc-binding finger
      0.068   13.5   1.4        0.2   12.0   1.4    1.8  1  zf-C2H2_8    C2H2-type zinc ribbon
       0.16   12.0  17.1      0.093   12.8   4.3    2.9  3  zf-C2H2_6    C2H2-type zinc finger
       0.54   10.1   2.9        6.9    6.6   0.9    2.5  2  GAGA         GAGA factor
       0.88    9.4  14.8        1.7    8.5   0.6    3.0  2  zf-H2C2_5    C2H2-type zinc-finger domain
        2.1    8.2   6.6        4.6    7.1   1.0    2.4  2  zf-C2H2_11   zinc-finger C2H2-type
        3.6    8.0   8.6        9.1    6.7   1.9    2.7  2  zf-C2H2_2    C2H2 type zinc-finger (2 copies)


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   4.0   1.3e-08   1.7e-05       1      23 []     712     735 ..     712     735 .. 0.98
   2 !   21.6   1.3   1.6e-07    0.0002       1      23 []     741     763 ..     741     763 .. 0.97

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.3e-08
                 EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                 ++C+ C+ksF+r+++LkrH r+ H
  CCD23168.1 712 FQCDQCTKSFRRSEHLKRHVRSvH 735
                 89*******************999 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1.6e-07
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 + C+ C k+F+r++nL +H++tH
  CCD23168.1 741 FACNLCEKKFSRSDNLSQHLKTH 763
                 78********************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   3.8   3.3e-07   0.00042       1      24 []     712     735 ..     712     735 .. 0.98
   2 !   20.1   1.4   6.2e-07   0.00079       1      23 [.     741     763 ..     741     764 .. 0.96

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 3.3e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkthH 24 
                 f+C++C+ksF+++++L+rH++++H
  CCD23168.1 712 FQCDQCTKSFRRSEHLKRHVRSVH 735
                 89*********************9 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 6.2e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f C +C k Fs++++L++Hlkth
  CCD23168.1 741 FACNLCEKKFSRSDNLSQHLKTH 763
                 89********************* PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.6   0.00042      0.53      13      25 ..     710     722 ..     707     723 .. 0.89
   2 !   25.4   3.3     1e-08   1.3e-05       1      25 [.     726     751 ..     726     752 .. 0.92
   3 ?    1.8   1.4      0.29   3.8e+02       1      11 [.     755     765 ..     755     767 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00042
   zf-H2C2_2  13 kpyeCplCdkaFk 25 
                 kp++C+ C k+F 
  CCD23168.1 710 KPFQCDQCTKSFR 722
                 8***********6 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1e-08
   zf-H2C2_2   1 nLrrHirk.HtgekpyeCplCdkaFk 25 
                 +L+rH r+ H +e+p+ C lC k+F+
  CCD23168.1 726 HLKRHVRSvHSKERPFACNLCEKKFS 751
                 79*****65****************8 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.29
   zf-H2C2_2   1 nLrrHirkHtg 11 
                 nL++H+++H++
  CCD23168.1 755 NLSQHLKTHKK 765
                 8********85 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   1.0    0.0053       6.8       2      23 ..     712     733 ..     711     737 .. 0.91
   2 !   16.4   4.0   6.7e-06    0.0085       2      26 ..     741     766 ..     740     766 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0053
                  CBBTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkS 23 
                  f C  C K F  ++ l+ H++S
   CCD23168.1 712 FQCDQCTKSFRRSEHLKRHVRS 733
                  66******************99 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 6.7e-06
                  CBBTTTTBBBSSHHHHHCCTTS.HHH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkS.KkH 26 
                  f C lC+K F+ + +l +Hlk+ KkH
   CCD23168.1 741 FACNLCEKKFSRSDNLSQHLKThKKH 766
                  88********************9999 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   4.5     1e-05     0.013       3      52 ..     712     763 ..     710     767 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-05
     zf-Di19   3 ftCPyCgkelt.vkeLveHvedeHrveskevvCPvCaekvtk..dlvaHltle 52 
                 f+C  C+k++   + L +Hv + H++e ++  C +C++k ++  +l +Hl+++
  CCD23168.1 712 FQCDQCTKSFRrSEHLKRHVRSVHSKE-RPFACNLCEKKFSRsdNLSQHLKTH 763
                 8999****86516789********987.689******9966444******754 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.5     0.069        89       1      22 [.     712     733 ..     712     734 .. 0.93
   2 ?   14.6   2.0   2.6e-05     0.034       1      24 [.     741     764 ..     741     764 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.069
      zf-met   1 fyCelCnvtfnsesqlksHlqG 22 
                 f+C+ C ++f    +lk H ++
  CCD23168.1 712 FQCDQCTKSFRRSEHLKRHVRS 733
                 78999**************998 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.6e-05
      zf-met   1 fyCelCnvtfnsesqlksHlqGKk 24 
                 f C+lC ++f+   +l +Hl+ +k
  CCD23168.1 741 FACNLCEKKFSRSDNLSQHLKTHK 764
                 56******************9887 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.3    0.0038       4.9      17      44 .]     712     736 ..     702     736 .. 0.88
   2 ?   14.7   0.8   1.8e-05     0.023      18      40 ..     742     763 ..     737     767 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0038
                 -EETTTTEE----SSTHHHHHHHHHS-H CS
      zf-BED  17 avCryCgkilsrgggttnLkrHLrrkHp 44 
                  +C  C k + r+    +LkrH r+ H+
  CCD23168.1 712 FQCDQCTKSFRRS---EHLKRHVRSVHS 736
                 57999*******7...**********96 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.8e-05
                 EETTTTEE----SSTHHHHHHH..H CS
      zf-BED  18 vCryCgkilsrgggttnLkrHL..r 40 
                  C+ C+k++sr+    nL++HL   
  CCD23168.1 742 ACNLCEKKFSRS---DNLSQHLktH 763
                 5**********8...7777777333 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.9    0.0005      0.65      34      59 ..     708     732 ..     676     735 .. 0.78
   2 ?    7.9   2.9    0.0034       4.3      34      61 ..     737     763 ..     732     766 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0005
     zf-C2HE  34 lktpLkCtrCganfgnkfpkLKeHLe 59 
                  ++p++C +C  + ++   +LK+H  
  CCD23168.1 708 ENKPFQCDQCT-KSFRRSEHLKRHVR 732
                 79*********.777888******75 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0034
     zf-C2HE  34 lktpLkCtrCganfgnkfpkLKeHLeee 61 
                 +++p+ C+ C+ + ++   +L +HL+++
  CCD23168.1 737 KERPFACNLCE-KKFSRSDNLSQHLKTH 763
                 789********.666777********99 PP

>> zf-C2H2_8  C2H2-type zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.4   0.00015       0.2      22      89 ..     698     763 ..     688     768 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
   zf-C2H2_8  22 rvhlsptqslegklfrcstascaetfpsmqelvahtklhykpnryfkcencllrfrthrslfkhlhvc 89 
                 +++ + ++  e k f+c    c+++f   + l  h +  +  +r f c+ c  +f     l +hl+  
  CCD23168.1 698 KTTTAYNYGDENKPFQCD--QCTKSFRRSEHLKRHVRSVHSKERPFACNLCEKKFSRSDNLSQHLKTH 763
                 6667777889999***97..6***************9999999**************99****99865 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       6.2   7.9e+03      11      19 ..     666     674 ..     664     674 .. 0.86
   2 ?    6.2   2.7    0.0081        10       2      23 ..     712     733 ..     712     738 .. 0.75
   3 ?   12.8   4.3   7.2e-05     0.093       2      26 ..     741     765 ..     741     766 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.2
   zf-C2H2_6  11 FpslqaLgg 19 
                 F slq L+g
  CCD23168.1 666 FTSLQHLTG 674
                 99***9987 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0081
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkks 23 
                 + C++C ksF+    L  H +s
  CCD23168.1 712 FQCDQCTKSFRRSEHLKRHVRS 733
                 89********986666666666 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 7.2e-05
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksHrk 26 
                 + C+ C k F+  ++L  H+k+H+k
  CCD23168.1 741 FACNLCEKKFSRSDNLSQHLKTHKK 765
                 78*********************97 PP

>> GAGA  GAGA factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.5     0.021        27      22      48 ..     709     735 ..     699     738 .. 0.86
   2 ?    6.6   0.9    0.0054       6.9      15      45 ..     731     761 ..     718     767 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.021
                 S--EE-TTT--EESSHHHHHHHHHHHT CS
        GAGA  22 EqPAtCPiCqAviRqsRnLRRHLELRH 48 
                 ++P  C  C    R s  L+RH+   H
  CCD23168.1 709 NKPFQCDQCTKSFRRSEHLKRHVRSVH 735
                 57999*****************87666 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0054
                 -CCCCTTS--EE-TTT--EESSHHHHHHHHH CS
        GAGA  15 iksksqsEqPAtCPiCqAviRqsRnLRRHLE 45 
                 ++s    E P  C +C      s nL  HL 
  CCD23168.1 731 VRSVHSKERPFACNLCEKKFSRSDNLSQHLK 761
                 5666678**********************96 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   7.8      0.03        39       1      26 []     712     737 ..     712     737 .. 0.90
   2 ?    8.5   0.6    0.0013       1.7      12      26 .]     752     765 ..     743     765 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.03
   zf-H2C2_5   1 YKCsqCDYstawksnLkRHlrrkHtg 26 
                 ++C+qC  s  ++  LkRH+r +H++
  CCD23168.1 712 FQCDQCTKSFRRSEHLKRHVRSVHSK 737
                 789999888889999*********96 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0013
   zf-H2C2_5  12 wksnLkRHlrrkHtg 26 
                 +++nL +Hl+ +H++
  CCD23168.1 752 RSDNLSQHLK-THKK 765
                 689*******.**96 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.0    0.0036       4.6       5      28 ..     712     735 ..     708     736 .. 0.94
   2 ?    3.7   0.4     0.042        54       7      25 ..     743     761 ..     740     764 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0036
  zf-C2H2_11   5 cqCleCGlcftSqlsLsRHlfIvH 28 
                 +qC +C   f  +  L+RH + vH
  CCD23168.1 712 FQCDQCTKSFRRSEHLKRHVRSVH 735
                 7********************999 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.042
  zf-C2H2_11   7 CleCGlcftSqlsLsRHlf 25 
                 C +C  +f+ +  Ls Hl 
  CCD23168.1 743 CNLCEKKFSRSDNLSQHLK 761
                 9****************96 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.9      0.04        51      51      73 ..     712     734 ..     702     740 .. 0.86
   2 ?    6.7   1.9    0.0071       9.1      51      75 ..     741     766 ..     734     769 .] 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.04
   zf-C2H2_2  51 leClyCekefkslealreHmkkk 73 
                 ++C  C k+f+  e+l+ H+++ 
  CCD23168.1 712 FQCDQCTKSFRRSEHLKRHVRSV 734
                 79*****************9874 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0071
   zf-C2H2_2  51 leClyCekefkslealreHmkk.kgH 75 
                 + C +Cek+f+  ++l +H+k+ k+H
  CCD23168.1 741 FACNLCEKKFSRSDNLSQHLKThKKH 766
                 78******************751456 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1161  (0.0647554); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5124.00
//
Query:       CCD23169.1  [L=687]
Description: hypothetical protein NDAI_0B01350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-13   49.1   0.0    1.8e-12   47.7   0.0    1.8  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   9.9e-17   1.8e-12       2     105 ..     318     433 ..     317     435 .. 0.83

  Alignments for each domain:
  == domain 1  score: 47.7 bits;  conditional E-value: 9.9e-17
   Rhodanese   2 akelkellekgkva.......llDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggr.aaaaaallk..... 87 
                 ++ l e+++k+ ++       ++D+R+++eY+ ghI++A+n+     +r + + + l++ ++++++l     + ++++c+ + +    +a  l+     
  CCD23169.1 318 PETLNEIINKKTYKpyydsytIIDCRFDYEYKGGHIKNAINL----STRDDLETELLKKYYHSIASL----PTLLIFHCEFSAHrGPKLASHLRncdrm 408
                 777888888888888888999*********************....677777777777777778887....99***********888888888888887 PP

   Rhodanese  88 .......klGyknvsvldGGfkawk 105
                        kl y+++ +ldGG++++ 
  CCD23169.1 409 lnyetypKLYYPDILILDGGYEQFF 433
                 7766544477899*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1042  (0.0581181); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4765.58
//
Query:       CCD23170.1  [L=172]
Description: hypothetical protein NDAI_0B01360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00014   21.6   0.0     0.0046   16.7   0.0    2.1  2  Peptidase_S26  Signal peptidase, peptidase S26
    0.00066   19.6   0.1     0.0019   18.1   0.1    1.8  1  Peptidase_S24  Peptidase S24-like


Domain annotation for each model (and alignments):
>> Peptidase_S26  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0    0.0093        83       2      35 ..      45      79 ..      44      88 .. 0.81
   2 !   16.7   0.0   5.2e-07    0.0046      81     137 ..      90     146 ..      85     147 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.0093
  Peptidase_S26  2 ilNasaSvpvglYriealek.levgdlvlvepPee 35
                   +lN+++S    ++  +  ++ ++v+d++l+++P +
     CCD23170.1 45 TLNPTDSSKDWVFLWKLNKEsIDVDDIILLKSPMD 79
                   5899999999888777666679**********976 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 5.2e-07
  Peptidase_S26  81 alerDrkgrplpslqgcrvlaegelfllskevadSfDsRYfGpvpassvigvarpvl 137
                    a + D+    +p  + + +++ ++ ++ +++v +S Ds  fGp+++  ++g+++ v+
     CCD23170.1  90 AKSYDKVQTIFPYPKDSAIIPRNHSWVEGDNVTHSIDSNTFGPISNGLILGKVTRVI 146
                    5678999999999999***********************************998775 PP

>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   2.1e-07    0.0019       1      55 [.      36      97 ..      36     111 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.1e-07
                   EXXSSTTCCTXXT....TXEEEEECTS..---TTSEEEEEETTCE.-EEEEEEEEETTEEEE CS
  Peptidase_S24  1 rvpGdSMeptlld....GdlilVdkfs..epkrGdivvfrlpgee.eayiKrviglpgdrvl 55
                   ++ G+SM ptl++     d ++  k +  +++ +di+  + p ++ ++++Kr++ +  d+v+
     CCD23170.1 36 QIHGNSMRPTLNPtdssKDWVFLWKLNkeSIDVDDIILLKSPMDPkKILCKRIKAKSYDKVQ 97
                   589****7777652222789999988889***************************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       274  (0.0152825); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1363.27
//
Query:       CCD23171.1  [L=487]
Description: hypothetical protein NDAI_0B01370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     6e-120  400.3  12.1     7e-120  400.1  12.1    1.0  1  SBF_like  SBF-like CPA transporter family (DUF4137)
    1.9e-12   47.3   6.8    3.3e-12   46.5   6.8    1.3  1  SBF       Sodium Bile acid symporter family


Domain annotation for each model (and alignments):
>> SBF_like  SBF-like CPA transporter family (DUF4137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.1  12.1  7.8e-124    7e-120       1     313 []      30     392 ..      30     392 .. 0.94

  Alignments for each domain:
  == domain 1  score: 400.1 bits;  conditional E-value: 7.8e-124
    SBF_like   1 qwfllllilvillAslvPvfakaggtikaeyvikyg.ValiFllsGlslsteellanlrnwrlhllvllisflltplivlalvsllkaaldpe....ll 94 
                 qwf+++l+++i++A+++P+fak+gg+ik +y+i+yg Va+iFl+sGls++t++l+an++nwr+hl++l++sfl+t++i+++l++++kaa+d++    +l
  CCD23171.1  30 QWFFYCLAIFIVIARFAPNFAKDGGLIKGQYSIGYGcVAWIFLQSGLSMKTKKLMANMSNWRAHLIILMLSFLITSSIAYGLCCAIKAANDKKiddwVL 128
                 8***************************************************************************************999656666** PP

    SBF_like  95 iGllllaalPtTvssnvvmtsqAgGnealalceavignllGvfltPalvqlll...........sgssvsvdyaevlkklllsvllPlvvGqvlqkifp 182
                 iG++l++++PtTv+snv+mt++AgGn++l++ce++ignllG+f+tPalvql++           +g +++ +y++v+k+++lsv+lPl+vGqv+q++f 
  CCD23171.1 129 IGIILTTTCPTTVASNVIMTTNAGGNDLLCVCEVFIGNLLGAFITPALVQLYTgrapfqygnpaTGDGIGALYGRVMKQVGLSVFLPLFVGQVIQNVFS 227
                 *****************************************************66666666555555******************************** PP

    SBF_like 183 klvkrlkkllkkv....dslvlllivytsfstafaqgaftsvsh..iillvifnvallLllvvlvillllarllk........................ 251
                 k+++++  +lkk+    +s++llli++++fstaf q+af+svsh  i ++++fn++l+L++++  i++l+ar+++                        
  CCD23171.1 228 KITEKYLAFLKKYhlkiGSYMLLLIMFSTFSTAFDQKAFSSVSHvcIVFICFFNLGLYLFFTG--ITYLCARPWFilklfptepipgessklyyysyki 324
                 ****9888877666666***************************8888888888888888888..8999******9*********************** PP

    SBF_like 252 .....lskedeiavlfcgsaKslalgvplisvlfgsnp.qlgllllPlllyhliqlvvaavlvsrlrr 313
                      ++k+d+i+++fcg+aK++algv+li++++g+++ +lg+ll+Pl+ly+ +q+++a+++v  +++
  CCD23171.1 325 frpfyYNKRDAICIMFCGPAKTAALGVSLITSQYGDKKeHLGKLLVPLVLYQGEQVLTASIFVGIFKK 392
                 ***********************************9999************************98875 PP

>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   6.8   3.6e-16   3.3e-12       5     188 ..      68     260 ..      65     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 3.6e-16
         SBF   5 ilmmfpmglkveveklkellkrpkalllglvlqwvikPllmfilakill..rdlklepelavGlilvglapggamsnv.wtylakGdlelsvvlvalst 100
                   + ++ gl ++ +kl + +++ +a l+ l+l ++i   ++++l  +++   d k++  +++G+il+  +p + +snv +t  a+G+  l+v  v++  
  CCD23171.1  68 AWIFLQSGLSMKTKKLMANMSNWRAHLIILMLSFLITSSIAYGLCCAIKaaNDKKIDDWVLIGIILTTTCPTTVASNViMTTNAGGNDLLCVCEVFIGN 166
                 56788999**************9999999*************9987665114669*********************9736889999************* PP

         SBF 101 llailltPlllyllaksl........eqttlkvpieeivksvlivviiPliaGillryillkhkGrewfeskllpavspisligllltivvifalk 188
                 ll  ++tP l+ l+++           +  +   + +++k+v + v +Pl +G++++ ++ k+  +e +   l+++   i+ + lll+++  f+ +
  CCD23171.1 167 LLGAFITPALVQLYTGRApfqygnpaTGDGIGALYGRVMKQVGLSVFLPLFVGQVIQNVFSKI--TEKYLAFLKKYHLKIGSYMLLLIMFSTFSTA 260
                 *****************999999998888999******************************6..8888888888877788888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1368  (0.076301); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 3781.85
//
Query:       CCD23172.1  [L=709]
Description: hypothetical protein NDAI_0B01380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-11   44.2   2.5    3.3e-11   43.3   0.1    2.8  3  FCH       Fes/CIP4, and EFC/F-BAR homology domain
  ------ inclusion threshold ------
      0.044   13.4   0.0       0.11   12.2   0.0    1.6  1  SH3_1     SH3 domain


Domain annotation for each model (and alignments):
>> FCH  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.1   3.7e-15   3.3e-11       1      76 [.      16      91 ..      16      92 .. 0.92
   2 ?   -2.1   0.1      0.54   4.9e+03      32      52 ..     322     343 ..     321     359 .. 0.65
   3 ?   -2.8   0.1      0.87   7.8e+03      54      64 ..     507     517 ..     479     541 .. 0.64

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 3.7e-15
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----TT-.....HHHHHHHHHHHHHHHHHHHHHH CS
         FCH  1 gfkvlqkrleqgialledlqeflkeRaeiEkeYakkLqkLakkylkrrkkkseestlvtawtvlleeteklaqshl 76
                g++vl+++++ gi++++ +++f+k+++eiEk+Ya++  ++ +k +k  k + e + l ++++ l e+  + aqsh+
  CCD23172.1 16 GVNVLLSHISAGIKSCDTMITFFKQKCEIEKDYARRVGAINEKLNKDLKINVEFGQLAESFNLLYETEVSKAQSHS 91
                789*******************************************43444499*********************7 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.54
                 HHHHHHHHHCT----TT.-... CS
         FCH  32 eYakkLqkLakkylkrr.kkks 52 
                  Y  + + L+++++++  +k +
  CCD23172.1 322 SYIDNIRTLSSQIQESVnSKPK 343
                 6888889999999998766554 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.87
                 .HHHHHHHHHH CS
         FCH  54 estlvtawtvl 64 
                 ++ + ++w+++
  CCD23172.1 507 SQRFAKSWNSM 517
                 34444555544 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.2e-05      0.11       1      47 [.     647     701 ..     647     701 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.2e-05
                 EESSSBEXSS..TTBXEBSTTEEEEEEEECSSSEEEEEETTS......TEEEEEE CS
       SH3_1   1 iAlYDYeaee..sdELsfkkGDviivleksedgWwkgrlkgt......gkeGliP 47 
                 +AlY+ +  +  ++ ++f  +D i + e  +++W++g++ ++      ++ GliP
  CCD23172.1 647 KALYPLMTDQtsTEVINFDTNDYILINEVINENWFRGEVYDNdripedRRSGLIP 701
                 6888888877756669***********************9986677666677776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2401  (0.133917); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4855.29
//
Query:       CCD23173.1  [L=938]
Description: hypothetical protein NDAI_0B01390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-28   98.9   0.5    2.3e-28   98.9   0.5    5.1  6  Eisosome1  Eisosome protein 1


Domain annotation for each model (and alignments):
>> Eisosome1  Eisosome protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.77   1.4e+04       3      40 ..     217     254 ..     216     256 .. 0.71
   2 ?   -3.8   0.0      0.81   1.5e+04      87     107 ..     268     288 ..     260     294 .. 0.72
   3 !   98.9   0.5   1.3e-32   2.3e-28       2     123 ..     333     449 ..     332     450 .. 0.97
   4 ?   -3.5   6.1      0.66   1.2e+04      88     115 ..     486     513 ..     465     522 .. 0.53
   5 ?   -1.9   0.5      0.21   3.9e+03      94     113 ..     602     621 ..     596     632 .. 0.52
   6 ?   -8.0   8.7         1   1.8e+04      44      95 ..     686     737 ..     605     770 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.77
   Eisosome1   3 allaaArrnvkaqLedidekvyadtgkvspslneewer 40 
                 ++l+ A+ +++++++d  e  +++++   +++++e+++
  CCD23173.1 217 KVLQGAQLKAESRIKDRWEPPVHSSSHGIKTNAAEYNN 254
                 78899999999998887666666666666666666665 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.81
   Eisosome1  87 deInekaekeRerdaelklee 107
                 ++++     eR+r +++k+e 
  CCD23173.1 268 SQVDLSHVDERKRLEADKAES 288
                 566666667888888888775 PP

  == domain 3  score: 98.9 bits;  conditional E-value: 1.3e-32
   Eisosome1   2 eallaaArrnvkaqLedidekvyadtgkvspslneewerkakaaaqaradkrseneagkvdiGggkfmdqeevdaiAarrvqPvLdeInekaekeRerd 100
                  ++l++Ar+nv+++L+ i +++y++    + + nee++++a+  aq +  k+    ++k+++Ggg+++++e++++iA++ v+PvL e++++a+++R++d
  CCD23173.1 333 SEVLSMARANVDRELKLIADSDYQT----RLFSNEEFNKAAVVTAQGNLAKKVPY-HNKINMGGGLWLTPEDIQNIAKDLVEPVLGEVDTRAKEQRAMD 426
                 589**********************....*******************9998877.******************************************* PP

   Eisosome1 101 aelkleeeekkreaeeekarere 123
                 ++l++++ e+k+  +e+++ +r+
  CCD23173.1 427 EDLAKRNLEYKNGINEWNNLQRT 449
                 *******************9997 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 0.66
   Eisosome1  88 eInekaekeRerdaelkleeeekkreae 115
                  ++++ e +R++ ae ++ +ee  +e e
  CCD23173.1 486 KMEKELELKRQEVAEANKHQEEFAKEME 513
                 3333333334443333333333333333 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 0.21
   Eisosome1  94 ekeRerdaelkleeeekkre 113
                 e+++er+ ++  + ++kk+e
  CCD23173.1 602 ENQKEREHAKLDDLDQKKEE 621
                 34444444433333333333 PP

  == domain 6  score: -8.0 bits;  conditional E-value: 1
   Eisosome1  44 aaaqaradkrseneagkvdiGggkfmdqeevdaiAarrvqPvLdeInekaek 95 
                 ++a ar d++ ++e+ k  +G       e++++  ++  qP++ eI+e+ e+
  CCD23173.1 686 NLASARGDDELNEEKVKALVGMTSKEYLEKIKESERQTSQPTMIEIHEEEEE 737
                 3333333333333344444555555555666666677777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (938 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2619  (0.146076); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.51
# Mc/sec: 5569.94
//
Query:       CCD23174.1  [L=335]
Description: hypothetical protein NDAI_0B01400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-79  265.1  23.5    5.2e-79  264.8  23.5    1.1  1  Frag1     Frag1/DRAM/Sfk1 family
     0.0062   16.7   1.6      0.017   15.3   1.1    2.1  2  DUF4079   Protein of unknown function (DUF4079)
  ------ inclusion threshold ------
       0.45   10.7   7.1       0.64   10.2   2.5    2.2  2  CobS      Cobalamin-5-phosphate synthase
          6    7.5   6.4       0.63   10.6   0.3    2.4  2  DUF2627   Protein of unknown function (DUF2627)


Domain annotation for each model (and alignments):
>> Frag1  Frag1/DRAM/Sfk1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.8  23.5   1.2e-82   5.2e-79       2     218 ..      11     259 ..      10     260 .. 0.99

  Alignments for each domain:
  == domain 1  score: 264.8 bits;  conditional E-value: 1.2e-82
       Frag1   2 ffllpliafilwlgmliamlvcavvqgpvdyvfmhkeqflPyISdigatnpeslffslalnlglflvilvallrfqr................lpplat 84 
                 ffllp+iafi+w+gmliaml+c+++qg+  y+fmh+eqf++yISdigatn+++lf+s++++ gl++ ++v+++++qr                +pp+++
  CCD23174.1  11 FFLLPWIAFIPWYGMLIAMLICWAAQGHPIYWFMHSEQFPVYISDIGATNLRPLFISCVAWEGLGYALTVFAEFYQRsggnllnrpnkrtkfyMPPWYH 109
                 89*************************555********************************************************************* PP

       Frag1  85 ksernlnfaalvlgligalglllvsifstaeyhsvHlvgavvffvfgflyvllqtalyykmgrhy..........................vwnkstis 157
                 k+ernl++aa+vlg +g+++ll+++ifsta yh+vHl++++vf+v++f++v++ + +y+ mgrhy                           wnk+tis
  CCD23174.1 110 KDERNLIIAACVLGAFGEIALLMCTIFSTALYHHVHLAMVAVFVVLMFFSVVCLSTEYFLMGRHYallhplasntdgvhfedlkwyqwkghYWNKFTIS 208
                 *************************************************************************************************** PP

       Frag1 158 frlkvvllilavvlailfgvffvrhkkkcgygayslsAifEWllafwfiiffltfsvDFyt 218
                 +  k+++l++av++ai+fg++++           s+sA+fEWllafwf+++f+++s+DFy+
  CCD23174.1 209 GLAKALWLAFAVIWAICFGAISND----------SKSACFEWLLAFWFGVLFVIISIDFYM 259
                 ***********************9..........*************************97 PP

>> DUF4079  Protein of unknown function (DUF4079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.1   3.8e-06     0.017      35     102 ..      91     163 ..      10     168 .. 0.74
   2 ?   -2.6   0.0       1.3   5.7e+03      10      28 ..     246     264 ..     239     289 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.8e-06
     DUF4079  35 k......aerkekipkkvrdeHvklgslllllvvlgaigglvllylrrgklfpssHlyaGlavvvLlalsaalv 102
                 +      +++k  +p+++ ++  +l     +l+++g i+ l+ +++ +  l ++ Hl + +++vvL+ +s+++ 
  CCD23174.1  91 NllnrpnKRTKFYMPPWYHKDERNLIIAACVLGAFGEIALLMCTIFSTA-LYHHVHLAMVAVFVVLMFFSVVCL 163
                 15555446778889999999999999999****************9876.********************9875 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
     DUF4079  10 vllvfpllgavaylGwqtr 28 
                 ++++f+++++  y+G   +
  CCD23174.1 246 FGVLFVIISIDFYMGSIYQ 264
                 3455555555556664444 PP

>> CobS  Cobalamin-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.027   1.2e+02      17      36 ..      17      34 ..       4      61 .. 0.78
   2 ?   10.2   2.5   0.00014      0.64      78     183 ..     110     226 ..     106     265 .. 0.47

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.027
        CobS 17 laffPlvGlllGlllllall 36
                +af+P+ G+l+++l+  +++
  CCD23174.1 17 IAFIPWYGMLIAMLI--CWA 34
                7899********996..222 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00014
        CobS  78 rerrleImkDsrvGafGvlalvlvlllkvaalaala..lllapvlsRlaallaiallpya....eeglgalfaeaqkk...................lv 151
                 +++r  I+    +GafG +al+++ ++ +a+ +++   +++++v+  ++  +++  ++y     +  l +++a++++                    + 
  CCD23174.1 110 KDERNLIIAACVLGAFGEIALLMCTIFSTALYHHVHlaMVAVFVVLMFF-SVVCLSTEYFlmgrHYALLHPLASNTDGvhfedlkwyqwkghywnkfT- 206
                 5566667778889****************99544443233334444333.333334444444332344444443222234444433333333333220. PP

        CobS 152 llal............avlllllalllaallvalllrrlarrkl 183
                    +            +                 +   +a   +
  CCD23174.1 207 ---IsglakalwlafaV-----------------I---WAIC-F 226
                 ...02222221111111.................1...1111.2 PP

>> DUF2627  Protein of unknown function (DUF2627)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.3         1   4.6e+03       4      38 ..     117     146 ..     114     171 .. 0.43
   2 ?   10.6   0.3   0.00014      0.63      33      71 ..     231     273 ..     213     276 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
     DUF2627   4 ialliLvipgllaayGiklmrdalfgilsspfssl 38 
                 ia ++L  +g      i l+  ++f ++  +  +l
  CCD23174.1 117 IAACVLGAFGE-----IALLMCTIFSTALYHHVHL 146
                 34444443333.....4444444444333333333 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00014
     DUF2627  33 spfssl....wlqflaGlllfaiglgfiaGfilhrdrKrnkva 71 
                 +  +s+    +l f +G+l+++i++ f  G i+   r  n+++
  CCD23174.1 231 NDSKSAcfewLLAFWFGVLFVIISIDFYMGSIYQSSRYFNQIE 273
                 4444444443899********************9999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1188  (0.0662614); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2414.04
//
Query:       CCD23175.1  [L=689]
Description: hypothetical protein NDAI_0B01410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.9e-05   22.1   0.1    8.9e-05   22.1   0.1    1.7  2  CUE            CUE domain


Domain annotation for each model (and alignments):
>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1     5e-09   8.9e-05       5      41 ..      22      57 ..      21      58 .. 0.95
   2 ?   -3.6   0.2      0.53   9.6e+03      27      36 ..      94     103 ..      94     104 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5e-09
                HHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHC CS
         CUE  5 letLkemFPdldeevIravLrasngnvEatinaLLeg 41
                letL e+FPd++ +++ +  ++++ ++E+ i+++ +g
  CCD23175.1 22 LETLTELFPDWTNDDLIDLVQEYD-DLETIIDKITSG 57
                89**********************.********9876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.53
                 CTTTHHHHHH CS
         CUE  27 sngnvEatin 36 
                 ++++ ++t n
  CCD23175.1  94 YDNDTDVTYN 103
                 79******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3889  (0.216911); expected 358.6 (0.02)
Passed bias filter:                      695  (0.038764); expected 358.6 (0.02)
Passed Vit filter:                       486  (0.0271069); expected 17.9 (0.001)
Passed Fwd filter:                       231  (0.0128842); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 4.21u 0.40s 00:00:04.61 Elapsed: 00:00:00.90
# Mc/sec: 2320.70
//
Query:       CCD23176.1  [L=604]
Description: hypothetical protein NDAI_0B01420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-19   70.5  13.8    3.2e-19   70.1   0.7    3.1  3  Striatin         Striatin family
      0.008   16.5   0.2        1.4    9.2   0.0    3.5  3  ANAPC4_WD40      Anaphase-promoting complex subunit 4 WD40 do
  ------ inclusion threshold ------
      0.027   14.4   8.4      0.039   13.9   7.3    1.8  1  Ax_dynein_light  Axonemal dynein light chain
      0.074   13.4   2.7       0.23   11.8   2.7    1.9  1  Mto2_bdg         Micro-tubular organiser Mto1 C-term Mto2-bin
       0.25   11.6   2.9       0.83    9.9   2.9    1.9  1  PKI              cAMP-dependent protein kinase inhibitor


Domain annotation for each model (and alignments):
>> Striatin  Striatin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.7   8.8e-23   3.2e-19       1      45 [.      17      61 ..      17      70 .. 0.93
   2 !    8.9   1.3   0.00061       2.2     107     152 ..      71     116 ..      61     119 .. 0.74
   3 ?   -2.4   0.5       1.8   6.4e+03     103     103 ..     210     210 ..     146     270 .. 0.54

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 8.8e-23
    Striatin  1 TLqgvlhFLQtEwhrherdRneweiEraEmkarIakLegerrgae 45
                TL+gv+h+LQtE+++ erdR  we+Er+Emka+I++Lege+r  +
  CCD23176.1 17 TLPGVMHYLQTEFTKNERDRITWELERSEMKAKISQLEGENRDLR 61
                9****************************************9865 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00061
    Striatin 107 kksakeslkkseaeeesesekrdeksrkksrqlLkqclqEityllt 152
                 k+s k++ ++  +e  +e+++++ +s  ksr+++++ ++Ei yll+
  CCD23176.1  71 KESKKSNCESDLQETGKEQDEASLSSLIKSRTVIQENVKEIVYLLK 116
                 333333333335567888999999*******************986 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.8
    Striatin 103 k 103
                 +
  CCD23176.1 210 E 210
                 0 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.12   4.2e+02      56      77 ..     118     139 ..     110     150 .. 0.85
   2 ?    0.8   0.0      0.17   6.2e+02      18      49 ..     341     375 ..     333     397 .. 0.65
   3 !    9.2   0.0    0.0004       1.4       2      51 ..     515     574 ..     514     594 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.12
  ANAPC4_WD40  56 aysdgevrlldaesgkvvhsls 77 
                  a   ++++ll+a++ ++vh+++
   CCD23176.1 118 ADVSNQLNLLNAKNDNMVHNME 139
                  566799*************986 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
  ANAPC4_WD40  18 ellvfRlngqrvwtl...eedkedsevrsLaWkpd 49 
                   ++++ +n q++ +     e+++  +++s+ +k++
   CCD23176.1 341 GVQLHNINEQKILSSlniFEQESIDNIESIDFKNN 375
                  46667777777777644444455555566666654 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0004
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlng.qrvwtl.........eedkedsevrsLaWkpdgk 51 
                   + +++D+i +a ++g+++v  ln  q++ +          e+ ++d+ v +L W+ ++k
   CCD23176.1 515 IFQNSKDIICFAFANGSIEVRKLNTfQNIIKQynhydetigETGDTDGLVIQLLWQGQNK 574
                  67899******************96699998889999999988999999*9****98776 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   7.3   1.1e-05     0.039     112     170 ..      34      92 ..      25     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
  Ax_dynein_light 112 rkalqaeqgkselekkikeLeeekeelekqvaelkaklealekrekerrqeeekkheee 170
                      r  +  e ++se+++ki++Le e+++l+ ++a+l+ k e+ +++ +  +qe  k+++e 
       CCD23176.1  34 RDRITWELERSEMKAKISQLEGENRDLRYKLAKLELKKESKKSNCESDLQETGKEQDEA 92 
                      7788999*********************************9999999999988887764 PP

>> Mto2_bdg  Micro-tubular organiser Mto1 C-term Mto2-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.7   6.4e-05      0.23      21      48 ..      40      67 ..      30      74 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.4e-05
    Mto2_bdg 21 lldrsgarerLeelkaeNrlLkaeLerd 48
                 l rs  ++++++l++eNr+L+ +L+++
  CCD23176.1 40 ELERSEMKAKISQLEGENRDLRYKLAKL 67
                5789999***************888775 PP

>> PKI  cAMP-dependent protein kinase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.9   0.00023      0.83      31      68 ..      54      91 ..      49      92 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00023
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         PKI 31 tvgtseLplkLeeLslkedekkedeessseeaekeqee 68
                +++ ++L  kL++L+lk+++kk + es+ +e+ keq+e
  CCD23176.1 54 EGENRDLRYKLAKLELKKESKKSNCESDLQETGKEQDE 91
                67889***********************9999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1371  (0.0764683); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 4708.73
//
Query:       CCD23177.1  [L=1063]
Description: hypothetical protein NDAI_0B01430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1063 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 7234.53
//
Query:       CCD23178.1  [L=383]
Description: hypothetical protein NDAI_0B01440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-84  283.6  19.0    2.1e-84  283.4  19.0    1.0  1  TAP42     TAP42-like family


Domain annotation for each model (and alignments):
>> TAP42  TAP42-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.4  19.0   1.2e-88   2.1e-84       2     319 .]       4     373 ..       3     373 .. 0.95

  Alignments for each domain:
  == domain 1  score: 283.4 bits;  conditional E-value: 1.2e-88
                 HHHHHHHHHHHHH.HHC-S.-TTSHHHHHHHHHHHHH.HHHHHHHHHHHTTT-SSS-CCCS-TTTGGGGGHHHHHHHHHCT---............... CS
       TAP42   2 selfekalklyeeslessa.psnseeyqekvkkaiaa.lekaaklvsqlslFSsNEsledistsdLkyLlvpyylaeltqkiqs............... 83 
                 se +++++k+y+e+le+s+ +++seeyq+ +++ +++ l+  + +v++++lFS NE+++d+st++LkyL+++yyl+ +++k q                
  CCD23178.1   4 SEKYDSIIKIYNEKLEHSSfRQDSEEYQTLLTTNLNDlLKFKSIIVDKMGLFSVNENIDDLSTKSLKYLSMDYYLGLMLSKRQMpstspahtttsqlqn 102
                 789*********************************9566667789*************************************9*************** PP

                 ......GGGHHHHHHHHHHHHHHHHCCHHHTTS....................S----.......-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT. CS
       TAP42  84 ....sdpeeRlevLkrakeyyeeFlkrlesyellseeekklleeleeeekyseseeef.......sdaaarReeKIarfkeeKeleekleelkkrves. 170
                     ++++ +l++Lk+a + + +Fl +l++y++l++  +k+++++e++++++  +e +       ++a+ +R++KI+ fk++Kel +kl+ l+++ +s 
  CCD23178.1 103 tdivERNKFKLDCLKSAIQSFIAFLILLQNYSILDDFLSKKINSFENKYNPK-LNELYssnkditANAQLKRDQKIEIFKRNKELSSKLKLLESKLHSh 200
                 ***********************************************99995.4555578989988889*************************99999 PP

                 .......T-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC...--XXXXX..................XXXXXXX..XXXXXXXXXXXX..XXX CS
       TAP42 171 .......eeeDeeevRelylaqlklavlkafqelesieqEleiLeaapkeeeqee..................skakkgpllskqgkplrPftilstRe 244
                        ++++ee +R+ly++qlk +++k+f+e+e+i +E e+L ++ k+ ++++                   ++ ++plls++gk+lr+ft++++R+
  CCD23178.1 201 nqseddlNDSNEELLRDLYVEQLKSLSYKSFNEIEQILMESELLLNFIKMGPEDPkkvngdrekqdkaeftdrLESLDKPLLSETGKILRNFTLIDQRT 299
                 87666555555***************************************998889*****************8899********************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX....XXXXXXXXXXXXXXXXXXX CS
       TAP42 245 elqkkVfgpghslPtMtvdEyleeevrrGniiegggeasakeeeeeedeeedeekadeeetqkarawDefkddnp 319
                 +lq+kV g+g++ PtMtv+E+l++e+++G++++gg+++  +e++++ed e++++++d eet+kar+wDefk++np
  CCD23178.1 300 KLQNKVKGYGQYGPTMTVEEFLDKEWEEGRVLQGGEDELIREQQRKEDMEDNYKWND-EETYKAREWDEFKEANP 373
                 **************************************99999999999*9******.****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1402  (0.0781973); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2664.94
//
Query:       CCD23179.1  [L=461]
Description: hypothetical protein NDAI_0B01450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-111  372.1   5.3   2.8e-111  371.9   5.3    1.0  1  DUF89     Protein of unknown function DUF89


Domain annotation for each model (and alignments):
>> DUF89  Protein of unknown function DUF89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.9   5.3  1.6e-115  2.8e-111       1     353 []      21     432 ..      21     432 .. 0.97

  Alignments for each domain:
  == domain 1  score: 371.9 bits;  conditional E-value: 1.6e-115
                 HHHTHHHHHHHHHHHHHHH....HTCC....HHHHHHHHHHHHHHHHHHHHCTTCGHHH-HHHH.................T-BTTBSBHHHHHHHHHH CS
       DUF89   1 tleerlpciltqviddlek....akde....keeelkkiieelselkeelqtdkpltpledeee.................krswfnapwlfaecylyr 74 
                 t+ +r+p+i+++ idd++     +  +     +++++ i +el + ++el +  pl+++++ee                  + +w n++wlf+e+ylyr
  CCD23179.1  21 TASTRWPIIIQNSIDDITAelakN--SsqgdYKKQGEIIKQELIKYRQELLDHIPLRKFTQEECkianvplsfneyldshkGVTWNNVEWLFSEIYLYR 117
                 6889***************77651..145669***************************77776*********************************** PP

                 HHHHHHTHSGGGTTS-TTHHHHHHHHHHHHHHHHHHHHHHHHCCSH.............HHHHHHHHHHHHHHCG--CCCHT..SHHCHHHHHHHHHHH CS
       DUF89  75 rllelfglskelknyDpFkeqKeesnksalkaveelakrleelede.............kelfkellkislwGNaiDlslla..teediqkdqeeeark 158
                 r++ +f+l++ +k +D+F+ +K++++k++l  v ela r+++l ++             ++lfke+++islwGNa+Dlsll+  t +di++ q+++ar+
  CCD23179.1 118 RINVMFQLQPLWKHFDIFNSLKQSTFKASLYGVIELALRYQSLITKfdsiandndkeilEILFKEFVEISLWGNATDLSLLTnaTLDDIKSIQGAKARE 216
                 *************************************************************************************************** PP

                 HHHCTESEE-HHHHHHHH..CTCHTSEEEEE--BTTHHHHHHHHHHHHHHHCTTTSEEEEEEBSS--TTTB-BHHHHHHHHHHHH-TTTS......... CS
       DUF89 159 aleknilvddleklwekl..kkkkakrvdivlDNaGfElvfDlllaeeLlesglatkVvlhvkaiPwfvsDvtpeDfewlleqladsksf......... 246
                 ++e++il++d++k+w+ l   + +++rvd++lDN+GfEl++Dl+la +Ll+++la+k+++h+k+ P++vsDv+++Df++lle+l+d+++f         
  CCD23179.1 217 ESESKILINDTKKAWDTLikLQGSNSRVDFILDNSGFELYADLMLASFLLHTKLANKIIFHAKDTPYMVSDVMLKDFDILLEDLKDRSFFnidpnsnds 315
                 ******************998999*************************************************************************** PP

                 .HHHHCHTTHHHHHHTSEEEEESSCGGSSS--CCGSS......SHHHHHHHHHC-SEEEEEHHHHHHHHTTSCTTTTTSEHHHHT...GTSS--EEEEE CS
       DUF89 247 .elsalgagldellkegklvlrgssfwttglsysemp......eapelyeelekadLvifKGdlNyrkLtgdrkwppttpfttal...gfspvpvlaLr 335
                  +l+ ++++++++  eg + +r++sfwt  l+y++++      + +el+++l +++LvifKGdlNyrkLtgdrkw +tt++++a+     +++++l+Lr
  CCD23179.1 316 rALDLFADNIKKFNVEGAIEVRTDSFWTNNLDYWNLDpsetkyHGAELHKDLLNSNLVIFKGDLNYRKLTGDRKWAHTTSWDDAIgplSSNGITLLSLR 414
                 ************************************999999999******************************************9*********** PP

                 E--SHHHHHHHSTTTHEE CS
       DUF89 336 tvKadvvagllegegekl 353
                 t+Kadv++gl+eg +e+l
  CCD23179.1 415 TIKADVLVGLPEGLNEEL 432
                 *************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3302.19
//
Query:       CCD23180.1  [L=408]
Description: hypothetical protein NDAI_0B01460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-45  155.7   9.5    1.8e-45  155.3   9.5    1.2  1  Pex2_Pex12     Pex2 / Pex12 amino terminal region
    1.1e-06   28.3   8.0    1.7e-06   27.8   8.0    1.3  1  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
    2.6e-05   24.0   4.8    4.5e-05   23.2   4.8    1.4  1  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
     0.0051   16.9   8.3     0.0093   16.1   8.3    1.4  1  zf-C3HC4_4     zinc finger of C3HC4-type, RING
     0.0072   16.6   5.0      0.013   15.8   5.0    1.4  1  zf-RING_2      Ring finger domain
     0.0083   16.0   6.7      0.015   15.2   6.7    1.4  1  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.044   13.8   7.3      0.086   12.9   7.3    1.5  1  zf-RING_UBOX   RING-type zinc-finger
        1.2    9.1   6.0        2.2    8.3   6.0    1.4  1  zf-RING_5      zinc-RING finger domain
        1.4    8.8   6.1        4.4    7.2   1.5    2.4  2  Prok-RING_4    Prokaryotic RING finger family 4
          4    7.4   5.6         23    5.0   0.1    3.3  3  Rad50_zn_hook  Rad50 zinc hook motif


Domain annotation for each model (and alignments):
>> Pex2_Pex12  Pex2 / Pex12 amino terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.3   9.5     1e-48   1.8e-45       2     224 ..      35     303 ..      34     304 .. 0.85

  Alignments for each domain:
  == domain 1  score: 155.3 bits;  conditional E-value: 1e-48
  Pex2_Pex12   2 eelesllkpalryilrllagqrfp......ilnyfdEikl.lldlllelltlksgngTfgeefygLkrv...................ssselkkrrll 74 
                 +e+++ll++++ryil++++ +r+p      ++nyfdE++  +l+ l+e+++lk+ n+Tf ++fygL+r+                   +ss+++  ++l
  CCD23180.1  35 QEIDALLPDSVRYILTNYWIARHPtkftlsVNNYFDEWFNlILKGLVEWYHLKRFNSTFVDKFYGLQRFssantlvlnsivspstsnfASSSWPIELQL 133
                 89************************************9779****************************************99999999999999*** PP

  Pex2_Pex12  75 skrqrllsllllvlipYlkekldelysarerysaealsd.earnsreslkkrlkrlllklypfiealyellnlvlqllYLsgky..ysllkrllgiryv 170
                 +k qrl+ ll +++ipYlk+kld ly   ++y ++   + +    +++++ r+k+++ ++yp+++++++l++++++l +L+gk    s+ ++l++i+y+
  CCD23180.1 134 TKVQRLIILLQKIIIPYLKNKLDVLY---NKYLTRLTFNnSKDENDTPTSLRVKKIFINVYPIWKKCWNLMDIIVKLSFLTGKTgsISIMEYLFNIQYT 229
                 **************************...66666555443444445566688****************************777777************* PP

  Pex2_Pex12 171 rlnpadq............rrnarrpsye........ylnrqllwnalkellgllll........llllsvfllkllewwys 224
                 r++p+ q                              +ln+ ++ n  +++l +           +++ ++f+l++++ww++
  CCD23180.1 230 RMTPPLQqqqqqlrgkaasI--------StdpderirKLNKYSFLNESSKILSSSKNalsfvgsqMFPSFIFMLRVYQWWTT 303
                 **999997777776666663........0334444445555555555555555555555555559***************87 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   8.0   9.4e-10   1.7e-06       2      46 ..     340     384 ..     339     388 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 9.4e-10
                 GSB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B CS
  zf-C3HC4_3   2 deeCviClerprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrp 46 
                 d+eC+iC+++ +n +++++g++ lC+ Ca k+l  ++ kCpi +++
  CCD23180.1 340 DKECPICHSEIQNPCVIETGYV-LCYPCAIKYLTeNEGKCPITHKK 384
                 789*******************.*********999******96665 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   4.8   2.5e-08   4.5e-05       1      39 [.     342     380 ..     342     381 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.5e-08
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn.eCPl 39 
                 +CpiC  ++++p  v++ g v C+ C  ++L+e++ +CP+
  CCD23180.1 342 ECPICHSEIQNP-CVIETGYVLCYPCAIKYLTENEgKCPI 380
                 6***********.9999*****************99***7 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   8.3   5.2e-06    0.0093       1      40 [.     343     379 ..     343     381 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 5.2e-06
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeqllCp 40 
                 CPiC + +++P  +e G++ C  C  ++  e++g+   Cp
  CCD23180.1 343 CPICHSEIQNPCVIETGYVLCYPCAIKYLTENEGK---CP 379
                 *******************************9986...77 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   5.0   7.3e-06     0.013       1      42 [.     341     380 ..     341     380 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.3e-06
   zf-RING_2   1 deCpICleelssadsvlllpCgHvfhreClerwlrssst.CPl 42 
                 +eCpIC +e+++  +v+ +  g+v ++ C+ ++l++++  CP+
  CCD23180.1 341 KECPICHSEIQN-PCVIET--GYVLCYPCAIKYLTENEGkCPI 380
                 59********74.788877..9**********96666556**7 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   6.7   8.3e-06     0.015       1      39 [.     343     379 ..     343     380 .. 0.97

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.3e-06
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--T CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCP 39 
                 CpiC +e+++p+ ++e +  +C++C  k+l  +++ kCP
  CCD23180.1 343 CPICHSEIQNPC-VIETGYVLCYPCAIKYLT-ENEGKCP 379
                 ************.******************.99999*9 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   7.3   4.8e-05     0.086       1      39 []     343     379 ..     343     379 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.8e-05
  zf-RING_UBOX   1 CpIClelftdP.lvlpCGHtFCreClwelskslegafkCP 39 
                   CpIC ++ ++P ++ + G ++C +C   ++   e++ kCP
    CCD23180.1 343 CPICHSEIQNPcVI-ETGYVLCYPCA--IKYLTENEGKCP 379
                   ***********554.89*********..99999******9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.0    0.0012       2.2       1      41 [.     342     380 ..     342     383 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0012
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHifCekClkkll.ekeavCpi 41 
                 +C++C++++   +++++ + g ++C  C+ k+l e+e +Cpi
  CCD23180.1 342 ECPICHSEI---QNPCVIETGYVLCYPCAIKYLtENEGKCPI 380
                 6********...9********************9*******8 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.5    0.0025       4.4      31      41 ..     341     351 ..     333     356 .. 0.77
   2 ?    3.8   6.4      0.03        54       1      40 [.     343     385 ..     343     392 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0025
  Prok-RING_4  31 ssCPlCqrris 41 
                  + CP+C+++i+
   CCD23180.1 341 KECPICHSEIQ 351
                  48*******96 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.03
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdsk...dlssCPlCqrri 40 
                  C +C ++ +++ ++  g ++C  C  +    +   CP+ ++++
   CCD23180.1 343 CPICHSEIQNPCVIETGYVLCYPCAIKYlteNEGKCPITHKKV 385
                  8899999999999999999999997665432444999999987 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.18   3.2e+02      35      50 ..     304     319 ..     303     321 .. 0.82
   2 ?    5.0   0.1     0.013        23      12      29 ..     332     350 ..     329     353 .. 0.74
   3 ?    1.7   0.3      0.13   2.3e+02      12      23 ..     368     379 ..     366     380 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.18
                    HHHHHHHHHHHHHHH. CS
  Rad50_zn_hook  35 seLikelqsklerlpe 50 
                    ++L+ +lq+++++l e
     CCD23180.1 304 EDLTTKLQKRIDNLDE 319
                    5789999999999987 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.013
                    HHHHTT-SE.E-TTT--EE CS
  Rad50_zn_hook  12 ieelkeakg.cCPlCgRel 29 
                    ie ++  ++  CP C++e+
     CCD23180.1 332 IETTNHYHDkECPICHSEI 350
                    66666667779*****997 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.13
                    HHHHTT-SEE-T CS
  Rad50_zn_hook  12 ieelkeakgcCP 23 
                    i+ l+e++g+CP
     CCD23180.1 368 IKYLTENEGKCP 379
                    66799******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2919.79
//
Query:       CCD23181.1  [L=303]
Description: hypothetical protein NDAI_0B01470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0076   16.7   2.2      0.015   15.7   0.4    2.1  2  MitMem_reg  Maintenance of mitochondrial structure and functi
      0.008   16.3   4.6       0.02   15.0   4.6    1.7  1  SDP_N       Sex determination protein N terminal


Domain annotation for each model (and alignments):
>> MitMem_reg  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.089     8e+02      35      51 ..      76      92 ..       9     156 .. 0.60
   2 !   15.7   0.4   1.7e-06     0.015      27      91 ..     216     288 ..     183     294 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.089
  MitMem_reg 35 ilqerldlikdYlkkve 51
                ++q+rl+li +  ++v+
  CCD23181.1 76 QVQQRLNLINKIYDNVV 92
                36666666666555544 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.7e-06
  MitMem_reg  27 nrqyyslkilqerldlikdYlkkveege........lpvnheilrnlqkllnllPhleteelekefnvetnDv 91 
                 nr +  l++l +++d +  Yl+  e+ge        +++n++ilr ++ l++ l +  t+++e+e++++ n+ 
  CCD23181.1 216 NRDEIKLRKLIKMIDNMIHYLEMFENGEyiikekkgIKINDKILRRISILISDLQKSPTKDIEDEIMNKENEI 288
                 555666788****************9988888889999***************************99998875 PP

>> SDP_N  Sex determination protein N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   4.6   2.3e-06      0.02      44     131 ..     193     286 ..     168     291 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.3e-06
       SDP_N  44 slhhskSksksksp.esrhrrrstssasksei.......lsekLessdgtsplFkGpegiqinateLrrikvdikrniptkstiselkrdivnped 131
                 s++ s+ k+++    ++++ ++++ +  k +        + + Le  ++   + k  +gi+in + Lrri + i+    +ks++++++ +i+n+e+
  CCD23181.1 193 SSSSSRNKNPQATTlQDNDEEENNRDEIKLRKlikmidnMIHYLEMFENGEYIIKEKKGIKINDKILRRISILISD--LQKSPTKDIEDEIMNKEN 286
                 3334444444444455566666666555554400101115556666666667888899***************986..6899***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       965  (0.0538234); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2305.05
//
Query:       CCD23182.1  [L=391]
Description: hypothetical protein NDAI_0B01480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-09   35.9   0.0    1.9e-08   34.9   0.0    1.5  1  dsrm            Double-stranded RNA binding motif
    0.00018   22.1   0.1    0.00051   20.6   0.0    1.8  2  Ribonuclease_3  Ribonuclease III domain
  ------ inclusion threshold ------
       0.19   12.1   0.9        7.5    6.9   0.0    2.8  3  RNaseH_C        T4 RNase H, C terminal


Domain annotation for each model (and alignments):
>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   3.2e-12   1.9e-08       3      65 ..     306     369 ..     304     370 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 3.2e-12
                 HHHHHHHHHTT.SEEEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHH CS
        dsrm   3 skLqeycqkkg.kppnyeyvseegpphslpkFvvtvkvngklygsGvgsnKKeAeqsAAedale 65 
                 ++L ++c+++g  +p  +   e g +++ p+F+v v  ++++ g+G gs+ KeA+ +AA dal 
  CCD23182.1 306 RELSKLCEREGlERPISKLLAESGRASKAPVFIVGVFSDKEKLGEGYGSSLKEAKARAATDALL 369
                 68999*********************************************************96 PP

>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5     9e+03      37      53 ..      37      53 ..      34      92 .. 0.60
   2 !   20.6   0.0   8.6e-08   0.00051       3     104 ..     149     266 ..     147     267 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
                    HHTSHHHHHHHHHCTTC CS
  Ribonuclease_3 37 klvsnenlarlakklgl 53
                    + ++n++l +l ++ + 
      CCD23182.1 37 QSCNNRTLLALTRQASY 53
                    56677777777754322 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 8.6e-08
                     HHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHH........HCTTCHCCHCHH.................HHCCSTTCHC.. CS
  Ribonuclease_3   3 LeflGDavlklaittylfetypdahegrlsklrsklvsnenlarla........kklglpkflrasefdpprnwlppgy...klsddekeddd.. 84 
                     L++ G+ +l +++t+ l+e+yp +    l+++  +++s  +l+ ++        k+  ++++l++++f++    l  ++   +      ++d+  
      CCD23182.1 149 LNIFGKNILSYYVTKKLLEKYPRLPTVILNAAIDSYISDYVLSSIGsqwgidieKQTVMERYLQNEPFEITLGKLRFYNnslN------YNDGie 237
                     7899******************************************999999988889999****999999999998653331......333345 PP

                     .........TSHHHHHHHHHHHHHHHHHC CS
  Ribonuclease_3  85 .........adkvladvvEAliGaiylds 104
                              + k ++ +v ++iG ++++s
      CCD23182.1 238 ivswkkkfnQVKAMSLAVRSIIGSLWIES 266
                     5666666668899999*******999986 PP

>> RNaseH_C  T4 RNase H, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0013       7.5      62      89 ..      62      92 ..      40     112 .. 0.85
   2 ?   -2.4   0.0      0.94   5.6e+03     104     114 ..     155     165 ..     150     171 .. 0.68
   3 ?    2.7   0.0     0.026   1.6e+02      47      89 ..     248     291 ..     228     312 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0013
                S-HHHHHHHHH...HHHHH-GGGS-HHHHHH CS
    RNaseH_C 62 lteeeyaryke...nlklldfdyipeniads 89
                l ++e+a+yke   nlk l ++ ipe+ia++
  CCD23182.1 62 LKDSEFAKYKEyyrNLKSLTINEIPEEIASK 92
                7789999888766689999*********985 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.94
                 HHHHHHHHTT- CS
    RNaseH_C 104 kiysyfvkkkl 114
                  i+sy+v kkl
  CCD23182.1 155 NILSYYVTKKL 165
                 46677776665 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.026
                 HHHH.HH-GGGHHHHS-H.HHHHHHHHHHHHH-GGGS-HHHHHH CS
    RNaseH_C  47 leallasdreelkkllte.eeyarykenlklldfdyipeniads 89 
                 ++a+  + r  +  l  e ++ a  ++ +k l f++i ++i + 
  CCD23182.1 248 VKAMSLAVRSIIGSLWIEsDQMAEQQQIKKNLAFKFIDDHIISR 291
                 5555555555566665551467778888999*********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2896.95
//
Query:       CCD23183.1  [L=1062]
Description: hypothetical protein NDAI_0B01490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.5e-12   46.3   0.0      1e-11   45.1   0.0    1.5  1  Helicase_C  Helicase conserved C-terminal domain
    2.9e-08   33.7   0.0    6.5e-08   32.5   0.0    1.5  1  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
       0.02   13.8   0.8      0.034   13.1   0.8    1.2  1  mTERF       mTERF
      0.024   14.7   0.0      0.099   12.6   0.0    2.0  2  ResIII      Type III restriction enzyme, res subunit
      0.053   13.5   0.0        0.1   12.5   0.0    1.4  1  DUF5033     Domain of unknown function (DUF5033)
       0.25   11.5   0.9          1    9.5   0.2    2.2  2  DUF1492     Protein of unknown function (DUF1492)


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   3.4e-15     1e-11      13     107 ..     529     619 ..     518     622 .. 0.87

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 3.4e-15
                 TTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTS CS
  Helicase_C  13 eeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRt 107
                    ++k+ i++ ++ ++e  kl+   ++++++ ++g+lp++e+++  ++f  +++++++i t+ +++Gidi+ v+lVi+ d+  ++ +yiq +GR 
  CCD23183.1 529 YDTKSKVNIVCIQKVTVE--KLI---SDMNMTGFDGDLPSEEKIRKSKRFIeDEKCRIMIGTKLVSEGIDIKAVKLVIMHDYLPSIWEYIQTAGRL 619
                 556778888888888886..777...6799999*****************8578899**************************************6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   2.2e-11   6.5e-08       8     169 ..     301     459 ..     297     465 .. 0.78

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 2.2e-11
                 HHHHHTTCEEE.EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   8 iplilgggdvl.vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtp 105
                 +++ l+g +++ ++a  G GKT+ f+ip+++  y   g++++  ++ +P   L  ++  +l++++ ++++   l+++g a + +++     +d++vgt 
  CCD23183.1 301 VEIYLSGTQIIpIQALPGFGKTALFQIPLVALSY---GEQKTVSFVFVPYVCLLSNIKLRLSSCGINCGILKDLFVNGPAIE-EKNL---FCDVYVGTF 392
                 56677777777799****************8887...788889************************997777889998873.3333...48******* PP

                 HHHHH.HH....HCTSSHCTTE..EEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxx.xx....xxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 106 grldd.ll....stgklnlsqv..rflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                   l +  +    ++ +  ++++   ++V+DE ++l  + +++ +  r++ ++     + +l  +v+v++ T+
  CCD23183.1 393 NDLGSeNFvrlvNNWYNIYQDCilGMIVIDEFHNLETEqSYRGQSFRLIPEI-----NFNLAWKVVVMTGTA 459
                 66666322344355553377765588*********98878888888888888.....334445699998886 PP

>> mTERF  mTERF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.8   1.1e-05     0.034     107     170 ..     463     526 ..     451     547 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
       mTERF 107 nlvevLrelGvpkkllarllisrpqvlaldlekkvkpkeieekVevlkelglskedvwkilkky 170
                  +v+ ++ +G  k++  +++ ++ ++l +dl+k++  k+i +k +v+++  +++++v k++ ++
  CCD23183.1 463 GMVKPMKFIGYDKEMCTSMVSNKNRILYFDLVKQIPLKNIVKKFQVFERSTVAETEVEKLVDRF 526
                 57899999***************************************************99886 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.3e-05     0.099      26     168 ..     310     458 ..     289     461 .. 0.75
   2 ?   -2.0   0.1         1     3e+03      72     118 ..     504     547 ..     492     582 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.3e-05
                 EEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH..... CS
      ResIII  26 rglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee.. 121
                  + i++  G GKT +  + l++  + ++k    +++vp   ll+  + +++++  ++   +  +v+g   ++   ++  ++++v t + l +++  +  
  CCD23183.1 310 IIPIQALPGFGKTALFqIPLVALSYGEQKTVS-FVFVPYVCLLSNIKLRLSSCGINCGILKDLFVNGPAIEE---KNLFCDVYVGTFNDLGSENFVRlv 404
                 44588889*****9998888888777766544.4568******************99755666677777777...88889************9966677 PP

                 .....HHHTTT-SEEEEETGGGTTS.T.....TTHHH..HHT---SEEEEEESS CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgakk.....swrei..lekfkeavllglTAT 168
                 +++ + +++    +i+iDE H+l  ++     s+r i  ++ + + +++ +T+T
  CCD23183.1 405 NNWYNIYQDCILGMIVIDEFHNLETEQsyrgqSFRLIpeINFNLAWKVVVMTGT 458
                 7777777777777************85344447777666666666777777777 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1
                 HHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH CS
      ResIII  72 eefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldads 118
                 ++f+ f  ++++  +++v++  +++ ++ +t++k+ ++ iq+++ ++
  CCD23183.1 504 KKFQVFERSTVA--ETEVEKLVDRF-MEYDTKSKVNIVCIQKVTVEK 547
                 445555555543..33333333333.556888889999999887665 PP

>> DUF5033  Domain of unknown function (DUF5033)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.5e-05       0.1      26      80 ..     698     757 ..     690     763 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.5e-05
     DUF5033  26 nsd.lkdvPavsleemdevLeaLrkntnakeecesesvegy....kkvkmtaeyqaatrg 80 
                 +s+ +++vP+ s  + ++++e Lr + + +e+  + ++ ++    ++v m+ +++  trg
  CCD23183.1 698 DSEhVGNVPSFSSANESSIFEDLRPDMDQSENFIASNDSSFpglsNEVDMLDNLEKSTRG 757
                 45559***************************************************9998 PP

>> DUF1492  Protein of unknown function (DUF1492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.62   1.9e+03      48      72 ..     400     424 ..     397     429 .. 0.88
   2 ?    9.5   0.2   0.00035         1      45      84 ..     516     555 ..     494     557 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.62
     DUF1492  48 lqrlidklensdsrsvLrmvyidkl 72 
                 + rl+++  n+ +  +L m+ id+ 
  CCD23183.1 400 FVRLVNNWYNIYQDCILGMIVIDEF 424
                 7899******************986 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00035
     DUF1492  45 klelqrlidklensdsrsvLrmvyidkltvwqvidklnis 84 
                 + e+++l+d++ + d++s +++v i+k+tv ++i ++n++
  CCD23183.1 516 ETEVEKLVDRFMEYDTKSKVNIVCIQKVTVEKLISDMNMT 555
                 57999*********************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1062 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       538  (0.0300073); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.41
# Mc/sec: 7720.79
//
Query:       CCD23184.1  [L=515]
Description: hypothetical protein NDAI_0B01500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-43  147.9   4.0    1.2e-42  146.4   4.0    1.7  1  MnmE_helical  MnmE helical domain
    3.2e-36  124.2   0.0    7.2e-36  123.0   0.0    1.6  1  TrmE_N        GTP-binding protein TrmE N-terminus
    1.3e-23   83.2   0.9    1.3e-23   83.2   0.9    2.1  2  MMR_HSR1      50S ribosome-binding GTPase
    7.1e-12   45.1   1.9    1.3e-11   44.2   1.9    1.5  1  FeoB_N        Ferrous iron transport protein B
    8.4e-10   38.8   6.8    2.3e-05   24.4   0.5    2.9  3  RsgA_GTPase   RsgA GTPase
    1.3e-08   34.7   1.7      2e-06   27.5   0.3    2.8  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    1.5e-05   24.5   1.9    0.00026   20.5   1.9    2.4  1  Arf           ADP-ribosylation factor family
    1.6e-05   24.6   0.3    3.6e-05   23.4   0.3    1.7  1  Ras           Ras family
    0.00098   18.2   1.6       0.99    8.3   0.1    3.5  4  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
     0.0018   18.4   3.8     0.0032   17.5   1.2    2.8  3  Dynamin_N     Dynamin family
      0.002   17.5   1.7     0.0043   16.4   1.7    1.6  1  AIG1          AIG1 family
  ------ inclusion threshold ------
      0.011   15.5   3.2       0.95    9.2   0.4    3.3  3  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
      0.011   15.9   0.0       0.72   10.1   0.0    3.2  2  Phage_CII     Bacteriophage CII protein
      0.014   15.7   0.2       0.09   13.0   0.2    2.3  1  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.018   14.7   4.9      0.026   14.1   2.8    2.1  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.059   13.0   1.1       0.11   12.1   0.3    1.9  2  SRP54         SRP54-type protein, GTPase domain
      0.068   13.6   0.0       0.56   10.6   0.0    2.2  2  AAA_16        AAA ATPase domain
       0.22   12.0   6.3        0.1   13.1   3.1    2.2  2  ABC_tran      ABC transporter
       0.53    9.6   2.9       0.58    9.5   0.4    2.0  2  Beta_protein  Beta protein


Domain annotation for each model (and alignments):
>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.4   4.0   1.3e-45   1.2e-42       1     206 []     162     512 ..     162     512 .. 0.92

  Alignments for each domain:
  == domain 1  score: 146.4 bits;  conditional E-value: 1.3e-45
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  MnmE_helical   1 LtqaEavadlIdAeteaaakaalrqleGelskkikelrekllellaeleaaiDFpeedleelsee....elaekleelkeelekllatakrgellre 93 
                   Lt+ E++++lI+Aete ++k+ +++++Ge + k++ +r++l++++a+l+a iDF e d+e  + +    +++++++++k ++e++l++ k++++l++
    CCD23184.1 162 LTELESINQLIEAETEIQRKCIISSFTGENNLKFEIWRQDLIKCVANLTAIIDFGE-DIEMSDVDslvnKVKAEITQIKVQIESFLNRLKKSRILKD 257
                   89****************************************************98.7777766678999*************************** PP

                   xxx.............................................................................................. RF
  MnmE_helical  94 Gik.............................................................................................. 96 
                   Gik                                                                                              
    CCD23184.1 258 GIKisligkpnagksslvncltsnetsivsdipgttrdvvdsyldidgykviltdtagirqnstdiiekmgiakalksikssdvslliidiseekee 354
                   *****************************************************************************************99999999 PP

                   ..............................xxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.x.xxx.xxxxxxxxxxx RF
  MnmE_helical  97 ..............................Dllkeke............ekeeeevlkiSaktgegieeLeeaike.le.l.eei.eeeplltnaRh 147
                                                 Dl ++++              ++++++ +S+ tg+gi++L++ +++ ++ l e++ e++p+l+++R 
    CCD23184.1 355 eeeeitnainnlielseaedkrsmiilnkkDLVNDEDkmeniterltksFGTKYPIVPVSCITGDGIKDLTDMLTKeFKtLsEDLdESSPILMSQRV 451
                   999999999999999999999999999999666666655555566665555556666*******************9986654447779******** PP

                   xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
  MnmE_helical 148 keale.kalealeeakealeaglpldlvaedLrealeaLgeItGe.vvtedlLdeIFskFC 206
                    ++l+ ++l  +e+ +++++++ +  +++edL+ a++ +g+ItG+ v ++++Ld +FskFC
    CCD23184.1 452 TDILQnDVLFGIESFINSVANEKDIVMATEDLNVAIDGIGKITGQaVGVDEILDFVFSKFC 512
                   *****89*************99766666*****************899************* PP

>> TrmE_N  GTP-binding protein TrmE N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.0   0.0   7.7e-39   7.2e-36       1     115 []      27     159 ..      27     159 .. 0.93

  Alignments for each domain:
  == domain 1  score: 123.0 bits;  conditional E-value: 7.7e-39
                 -EEEE-S-SS.S-SEEEEEEESTTHHHHHHTTEEE..T--CTEEEEEEEECT..........TCEEEEEEEEEEBTTCSTTSSEEEEEEEESSHHHHHH CS
      TrmE_N   1 TIaAlatpag.kgaiaiiRvsGpkaleiakklfkk..elkprkallgklvdee........ekevlDevlvlvfkaprsyTgedvvElhlhGgpavvka 88 
                 TI+Al+tp+g ++aiaiiR+sG+++l+++++++ +   +kpr+a+l+++++++        +k+++D+ l+l+f++p+s+Tge+++E+h+hGg+av++a
  CCD23184.1  27 TIYALSTPPGqRSAIAIIRISGQQSLHVYQSITGNlsIPKPRTAILKNIYEPSsllanskkKKNLIDSSLFLYFQSPNSFTGENLLEIHCHGGKAVTSA 125
                 9********9779*****************9988777788*********998899999999999*********************************** PP

                 HHHHHHCT........T-EE--CTHHHHHHHHTTS CS
      TrmE_N  89 vleallka........garlAepGEFtkRaflngk 115
                 +l+++ ++        ++r+A pGEF++Raf n+k
  CCD23184.1 126 ILKSI-QSlndpqrgvEIRYAGPGEFSRRAFQNNK 159
                 *****.445778887789***************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1         3   2.8e+03      77     107 ..     225     252 ..     203     255 .. 0.64
   2 !   83.2   0.9   1.4e-26   1.3e-23       1     114 []     260     383 ..     260     383 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3
                 SEEEEEEETTTTCSHHHHHHHHHHHHHTTSE CS
    MMR_HSR1  77 dlillvvdaseeklkpldeeleelleeakkp 107
                 d ++  v+   +++++++ ++e++l++ kk 
  CCD23184.1 225 DSLVNKVK---AEITQIKVQIESFLNRLKKS 252
                 33333333...45888888888888776655 PP

  == domain 2  score: 83.2 bits;  conditional E-value: 1.4e-26
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS...HHHHHH.HHHHHHHHHHCTSEEEEEEETT......TT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGlie...gaseek.glgkaflaleeadlillvvdas......ee 88 
                 ++ ++G+pN+GKS+L+n lt + ++ivsd+pgtTrd++   ++++g +++l+Dt+G i    ++  ek g++ka+++++++d+ ll++d+s      ee
  CCD23184.1 260 KISLIGKPNAGKSSLVNCLTSNeTSIVSDIPGTTRDVVDSYLDIDGYKVILTDTAG-IRqnsTDIIEKmGIAKALKSIKSSDVSLLIIDISeekeeeEE 357
                 5899***************998699*******************************.5423322233369*******999***********66654433 PP

                 CSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  89 klkpldeeleelleeakkplilvlnk 114
                 ++++  ++l el e ++k+ +++lnk
  CCD23184.1 358 EITNAINNLIELSEAEDKRSMIILNK 383
                 55556666666666588999999998 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   1.9   1.4e-14   1.3e-11       1     154 [.     259     426 ..     259     428 .. 0.79

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 1.4e-14
                 EEEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHH.HHHHHHHCTSSSEEEEEEEGG........ CS
      FeoB_N   1 itvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeek.vardflleeepdvvvnvvdat........ 89 
                 i++ l+G+pn+Gk++l+n lt  + + v+  pG+t +    +l+++g++v ++D  Gi + s+  +e+  +a+ +   ++ dv + ++d +        
  CCD23184.1 259 IKISLIGKPNAGKSSLVNCLTSNEtSIVSDIPGTTRDVVDSYLDIDGYKVILTDTAGIRQNSTDIIEKMgIAKALKSIKSSDVSLLIIDISeekeeeee 357
                 5899*****************88725689*****************************99877777765156555556788988888886411121111 PP

                 GHHHHHHHHHHHHHTT.SSEEEEEETHHHHHHTT.EEE-HHHHHHHHT..S-EEEEBTTTTBTHHHHHH CS
      FeoB_N  90 nlernLyLtlqllelg.vpvvlalnmideaekkg.ieidlkkLsekLg..vpvvktsakkkegieellk 154
                 ++   +  +++l e + ++ +++ln+ d ++++  +e  +++L++++g   p+v++s  +++gi++l++
  CCD23184.1 358 EITNAINNLIELSEAEdKRSMIILNKKDLVNDEDkMENITERLTKSFGtkYPIVPVSCITGDGIKDLTD 426
                 4566677777888876577899*******9987615555789*****94469*************9986 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         2   1.8e+03      54      88 ..     158     191 ..     157     207 .. 0.80
   2 !   16.9   0.4   4.8e-06    0.0046      60     143 ..     217     295 ..     196     322 .. 0.70
   3 !   24.4   0.5   2.4e-08   2.3e-05      31     103 ..     359     434 ..     325     436 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2
                  E-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHT CS
  RsgA_GTPase  54 nKiDlleeeeeleelkeelealgyevllvsaktke 88 
                  nK Dl+e e+ +++l e+ ++++ ++++ s + ++
   CCD23184.1 158 NKFDLTELES-INQLIEAETEIQRKCIISSFTGEN 191
                  8999999999.999999999999888887766443 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 4.8e-06
                  -HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHH..CTT.SEEEEECSTTSSHHHHHHHHCTT-----S--------------S CS
  RsgA_GTPase  60 eeeeeleelkeelealgyevllvsaktkegleelkel..lkd.ktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTta 143
                  e+ e ++++ + ++++  e++ ++++ ++ l++lk+   lkd   + l+G+  +GKS+L+n l+++++  ++++         TT+ 
   CCD23184.1 217 EDIE-MSDVDSLVNKVKAEITQIKVQIESFLNRLKKSriLKDgIKISLIGKPNAGKSSLVNCLTSNETSIVSDIPG-------TTRD 295
                  4444.7777778888888888888888888888876433888444669*****************97777776654.......4444 PP

  == domain 3  score: 24.4 bits;  conditional E-value: 2.4e-08
                  -HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHH...TTSEEEE--TTTHTTHHHHHHHCTTSEEE CS
  RsgA_GTPase  31 slnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelea...lgyevllvsaktkegleelkellkdktsv 103
                   +n ++ ++ l e+++ + +i+lnK Dl+++e+++e++ e+l++   + y+++ vs  t++g+++l+++l++++ +
   CCD23184.1 359 ITNAINNLIELSEAEDKRSMIILNKKDLVNDEDKMENITERLTKsfgTKYPIVPVSCITGDGIKDLTDMLTKEFKT 434
                  35678888889999999****************9998888877532257*********************998765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       2.3   2.2e+03     130     154 ..     158     195 ..     154     246 .. 0.58
   2 !   27.5   0.3   2.1e-09     2e-06      55     192 ..     293     432 ..     256     434 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.3
                 ESCGSTHHHHHHHHHHHHHHHHHH.............H CS
    GTP_EFTU 130 NKmDrlkaelkeiveevkqklsrk.............e 154
                 NK D ++ e  ++  e++++++rk              
  CCD23184.1 158 NKFDLTELESINQLIEAETEIQRKciissftgennlkF 195
                 88888855555555555555544444445544444440 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 2.1e-09
                 CSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHH.........HHT-SEEEEEEETTTB.......STHHHHHHHHHHHHTTTEEEEEEESCGST.. CS
    GTP_EFTU  55 TiksaaisleketkkylinliDtPGHvdFskevirg.........lrvlDgavlvvdaveG.......vepqteevlrlalkegvpiivfiNKmDrl.. 135
                 T ++   +l+   + y++ l Dt G ++ s ++i+          ++  D+ +l++d++e        +++  +++++l  +e+ + ++++NK D +  
  CCD23184.1 293 TRDVVDSYLD--IDGYKVILTDTAGIRQNSTDIIEKmgiakalksIKSSDVSLLIIDISEEkeeeeeeITNAINNLIELSEAEDKRSMIILNKKDLVnd 389
                 4444444444..6667777777777666666555432333333338899**********776666666999999999********************87 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHS CS
    GTP_EFTU 136 kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvell 192
                 ++++++i e + +++             g +++p+v++S+++g+g+k+l ++l++ +
  CCD23184.1 390 EDKMENITERLTKSF-------------G-TKYPIVPVSCITGDGIKDLTDMLTKEF 432
                 788888888888888.............4.379*******************99876 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   1.9   2.7e-07   0.00026       6     173 ..     250     430 ..     243     432 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.7e-07
                 HGGTT.TTEEEEEEEESTTSSHHHHHHHHHHSSCEE..CSSSSSEEE..EEEEETTEEEEEEEE-SSGG..........GGGGGGGGCTTESEEEEEEE CS
         Arf   6 aklklkkkelrilllGLDnaGKtTilkklkleelvt..tvPTigfnv..eeleiknlkftvwDvGGqek..........lRplWknYfektdavifvvD 90 
                 +k +  k  ++i l+G  naGK+ +++ l+++e++    +P +  +v    l i ++k+ + D  G ++          + +  k   ++ d+ + ++D
  CCD23184.1 250 KKSRILKDGIKISLIGKPNAGKSSLVNCLTSNETSIvsDIPGTTRDVvdSYLDIDGYKVILTDTAGIRQnstdiiekmgIAKALK-SIKSSDVSLLIID 347
                 4555557789999***************999886542266644444412347778888888887774431222211111333333.3566788888999 PP

                 TT-CT..THHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHH.HHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHH CS
         Arf  91 sadre..RleeakeeLkalleeeelkevallvlaNKqDlpealseee.lrellgleelkgkrkleiqkcsavkgeglkeglewlse 173
                  ++++    ee  + +++l+e +e ++   +++ NK+Dl ++ ++ e ++e l+ ++    +k  i+ +s ++g+g+k+  + l++
  CCD23184.1 348 ISEEKeeEEEEITNAINNLIELSEAEDKRSMIILNKKDLVNDEDKMEnITERLT-KSF--GTKYPIVPVSCITGDGIKDLTDMLTK 430
                 887652256678899************************998776551555554.344..47999***************999987 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.3   3.8e-08   3.6e-05       1     159 [.     260     431 ..     260     434 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.8e-08
                 EEEEEESTTSSHHHHHHHHHHSSCS..SSCTTTSSEEEEEEEEEETTEEEEEEEEEETT..SGGGHHHHHH.......HHTTESEEEEEEETTBHHH.. CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFk..eeyesTigvdfytkeievdgkevkleiwDTAG..qeefkslrel.......yyrdaegillvyditsres.. 86 
                 K+ l+G+ + GK+sl++  ++++ +  ++   T   d   + +++dg  +k+ + DTAG  q+  + ++++       +++++++ ll+ di++++   
  CCD23184.1 260 KISLIGKPNAGKSSLVNCLTSNETSivSDIPGTT-RDVVDSYLDIDG--YKVILTDTAGirQNSTDIIEKMgiakalkSIKSSDVSLLIIDISEEKEee 355
                 7889****************99865113333444.666666666666..555678****7766666666542222233778899********9876511 PP

                 HHTHHHHHHHHHHHST.TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEE..EEEBTTTTCTHHHHHHHHHHH CS
         Ras  87 fenvkkwveeikrvae.envpivLvGnKvDleekravsteegeelakelglkf..letSAktnenveeafeellre 159
                  e++++ ++++ +  e e+   +++ nK Dl +++   ++  e+l k++g+k+  + +S  t  +++++ ++l++e
  CCD23184.1 356 EEEITNAINNLIELSEaEDKRSMIILNKKDLVNDEDKMENITERLTKSFGTKYpiVPVSCITGDGIKDLTDMLTKE 431
                 56788999999888888889999*********98888888889999999977744678888888888877777665 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         2   1.9e+03     176     215 ..     159     210 ..     157     233 .. 0.69
   2 ?    2.3   0.0     0.071        67      31      51 ..     260     280 ..     256     288 .. 0.88
   3 !    8.3   0.1    0.0011      0.99     109     144 ..     292     328 ..     284     341 .. 0.82
   4 ?    4.1   0.0      0.02        19     171     234 ..     378     437 ..     352     460 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2
                 ---HHHHHHHHHHHHHHHHHCST............TBTTB--EEEEEBCCCT CS
        MeaB 176 kaDkkeaekaarelraaleleee............kekeWrpkvlktsaveg 215
                 k D++e e  ++ ++a  e++++            k + Wr  ++k++a   
  CCD23184.1 159 KFDLTELESINQLIEAETEIQRKciissftgennlKFEIWRQDLIKCVANLT 210
                 5565565655555555555555556666666555567889999999999765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.071
                 EEEEEE-TTSSHHHHHHHHHH CS
        MeaB  31 vvGltGvPGaGkstlvealgl 51 
                 ++ l G P aGks lv+ l+ 
  CCD23184.1 260 KISLIGKPNAGKSSLVNCLTS 280
                 68899***********99986 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0011
                 HHHHHHH.HHHHTT-SEEEEEEESSTTHHHHHHTT-S CS
        MeaB 109 ktrevvl.lleaaGfDvvlietvGvGqsevdvaevvd 144
                  tr+vv   l+  G+ v+l +t G+ q  +d++e + 
  CCD23184.1 292 TTRDVVDsYLDIDGYKVILTDTAGIRQNSTDIIEKMG 328
                 5777774268999********************9765 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.02
                 EEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCCCTBSHHHHHHHHHHHHHHHHH CS
        MeaB 171 iivvnkaDkkeaekaarelraaleleeekekeWrpkvlktsavegeGidelvdaieehrevlkk 234
                 +i++nk D+ + e   ++++  l++    + + + +++ +s  +g+Gi++l+d +++ +++l++
  CCD23184.1 378 MIILNKKDLVNDEDKMENITERLTK----SFGTKYPIVPVSCITGDGIKDLTDMLTKEFKTLSE 437
                 5778888876666554444444333....3344568999**************99988877765 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.7   6.3e+03      54      79 ..     154     179 ..     117     197 .. 0.70
   2 !   17.5   1.2   3.4e-06    0.0032       1      80 [.     261     371 ..     261     402 .. 0.60
   3 ?   -2.8   0.0       6.3   5.9e+03      66     103 ..     422     459 ..     419     461 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.7
                 SEEEET-EB--CHHHHHHHHHHHHHH CS
   Dynamin_N  54 elkekekkledfsevreeieketeki 79 
                  +++++ +l++++ +++ ie+ete  
  CCD23184.1 154 AFQNNKFDLTELESINQLIEAETEIQ 179
                 44555556666666666666666654 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 3.4e-06
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE...................................CCT---CCS...SSEEEE...... CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql...................................geeeeaseravkeelkek...... 58 
                 i ++G+ ++GKSS++n L+  +   ++ +p T r ++ ++                                    ++++                   
  CCD23184.1 261 ISLIGKPNAGKSSLVNCLTSNETSIVSDIPGTTRDVVDSYldidgykviltdtagirqnstdiiekmgiakalksIKSSD------------Vslliid 347
                 7799*************************988887777777888888888888877665555555554444443311111............0111111 PP

                 ..T-EB--CHHHHHHHHHHHHHHH CS
   Dynamin_N  59 ..ekkledfsevreeieketekia 80 
                   e+k+e+ +e++++i++  e ++
  CCD23184.1 348 isEEKEEEEEEITNAINNLIELSE 371
                 222233333333333333333333 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 6.3
                 HHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETTS-SE CS
   Dynamin_N  66 sevreeieketekiagankgiskkvillkilsllvkgl 103
                 +++++ ++ke++++++ +++ s ++++ +++++l++++
  CCD23184.1 422 KDLTDMLTKEFKTLSEDLDESSPILMSQRVTDILQNDV 459
                 67778888888888888888888888888888877766 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.7   4.5e-06    0.0043       2     133 ..     260     391 ..     259     406 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.5e-06
                 EEEEESSTTSSHHHHHHHHHTS--.SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETT.B-SH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkka.FesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslg.rfte 98 
                 +i l+Gk  +GkS+ +N +  ++    s     + t+ +  +    dg k+   DT g+ +  +s+d i+k  +   l s ++ ++ ll+++++ + +e
  CCD23184.1 260 KISLIGKPNAGKSSLVNCLTSNETsIVSD--IPGTTRDVVDSYLDIDGYKVILTDTAGIRQ--NSTDIIEKMGIAKALKSIKSSDVSLLIIDISeEKEE 354
                 5789**************98877624555..5888999999999***************65..455555555455566677779**********88899 PP

                 HHHHHHHHHHHHHC.GGGGG.GEEEEEEEGGGGTTCC CS
        AIG1  99 edekalktlkelFG.ekilk.ylivvftrkddledds 133
                 e+e++++++++l + +++ +    +++ +kd ++d++
  CCD23184.1 355 EEEEITNAINNLIElSEAEDkRSMIILNKKDLVNDED 391
                 9999999999988733333314455555555555554 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.06        57       3      25 ..     260     282 ..     259     289 .. 0.88
   2 ?    9.2   0.4     0.001      0.95      90     142 ..     375     429 ..     317     430 .. 0.76
   3 ?    1.2   0.0       0.3   2.8e+02      79     122 ..     446     492 ..     435     507 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.06
   PduV-EutP   3 killiGkvgsGKttLtqalkgee 25 
                 ki liGk ++GK +L + l+ +e
  CCD23184.1 260 KISLIGKPNAGKSSLVNCLTSNE 282
                 789*************9998765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.001
   PduV-EutP  90 keviGiitkidlaedeenieaveelLks.aGaek.ifevsavekegieellkyle 142
                 k  + i+ k dl++de+++e+  e+L++  G +  i  vs ++ +gi++l+++l+
  CCD23184.1 375 KRSMIILNKKDLVNDEDKMENITERLTKsFGTKYpIVPVSCITGDGIKDLTDMLT 429
                 55566999************999999651688753799************99986 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.3
   PduV-EutP  79 vfppgfasvfnkevi.GiitkidlaedeenieaveelLksa..Gaek 122
                 ++++ ++ +++ +v+ Gi   i+ + +e++i ++ e L+ a  G+ k
  CCD23184.1 446 LMSQRVTDILQNDVLfGIESFINSVANEKDIVMATEDLNVAidGIGK 492
                 567888899999986599999****************9987334444 PP

>> Phage_CII  Bacteriophage CII protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.32     3e+02      11      31 ..       3      23 ..       1      25 [. 0.87
   2 ?   10.1   0.0   0.00077      0.72      29      84 ..     184     241 ..     156     245 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.32
                HHHHHHHHHHHHHHHHHHHHH CS
   Phage_CII 11 driesdlLnkiailgqrkvae 31
                +r +s++Ln+i   ++r + e
  CCD23184.1  3 NRNTSAILNNICYYSTRSITE 23
                7899*********99998865 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00077
                 HHHHHTSSTTTHHHHHHHHHHHHHHHHHHTTTTHHHH..HHHHHHHHHHHHHHT-XXX CS
   Phage_CII  29 vaeaiGvdeskisrwktDwipkasvLlavlefGvadd..elarlakkvadlLtkkkrp 84 
                 ++   G ++ k   w++D i  ++ L a+++fG   +  ++  l+ kv + +t+ k +
  CCD23184.1 184 ISSFTGENNLKFEIWRQDLIKCVANLTAIIDFGEDIEmsDVDSLVNKVKAEITQIKVQ 241
                 45667888889999*******************6555559999999999999998865 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   9.6e-05      0.09       1      66 [.     260     318 ..     260     386 .. 0.47

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.6e-05
                 EEEEESSTTSSHHHHHHCHCT-CCC-E.EETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-S..G CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsek.ekstigvdfltkevtkikgvendkkvkkvklniWDtaG..q 66 
                 K+ l+G+ ++GK+sl++ +++++ s     + +  d++++ + +i+g         +k+ + DtaG  q
  CCD23184.1 260 KISLIGKPNAGKSSLVNCLTSNETSIVsDIPGTTRDVVDSYL-DIDG---------YKVILTDTAGirQ 318
                 899*****************9887633023333334433322.3333.........3444556666433 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.86   8.2e+02       5      24 ..     263     282 ..     260     289 .. 0.82
   2 ?   14.1   2.8   2.8e-05     0.026      84     168 ..     307     402 ..     287     411 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.86
                 EEESTTCCHHHHHHHHHCT- CS
        cobW   5 ltGflGsGKTtLlnhllenr 24 
                 l G + +GK++L+n l++n+
  CCD23184.1 263 LIGKPNAGKSSLVNCLTSNE 282
                 668888********999775 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.8e-05
                 SEEEEEECT.TTTHHHHHTT...SHHHHHCCCECEEEEEEETTTH..CCHCCHHHHHHHHHHTS......SEEEEE-HHHHCHC..HHHHHHHHHH CS
        cobW  84 dviliEttG.laePapvaft...eeelksdltldavvavvDaknl.eaeeekieekaedqlaaa......dllvlnKtDlldeeallekleerlrq 168
                  vil  t G   + + ++ +   ++ lks    d+ + ++D ++  e+eee+i++ +++ ++ +      ++++lnK Dl+++e+++e+++erl++
  CCD23184.1 307 KVILTDTAGiRQNSTDIIEKmgiAKALKSIKSSDVSLLIIDISEEkEEEEEEITNAINNLIELSeaedkrSMIILNKKDLVNDEDKMENITERLTK 402
                 566666666333344442224456667778889999999999776567778888888888887744444469************887888877665 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         4   3.8e+03      97     130 ..     157     193 ..     155     196 .. 0.70
   2 ?   12.1   0.3   0.00012      0.11      82     130 ..     304     355 ..     287     385 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4
                 THHHHHHHHHHHHHHH...SSSEEEEEEETTBHTHHH CS
       SRP54  97 ndkelmeelkkikkvv...kpdevllvldattgqeav 130
                 n+k  ++el++i++ +   ++++   ++++ tg++ +
  CCD23184.1 157 NNKFDLTELESINQLIeaeTEIQRKCIISSFTGENNL 193
                 5555678888888888555666667888888888765 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00012
                 TTSSEEEEEE--SSTTHHHHHHHH...HHHHHHHSSSEEEEEEETTBHTHHH CS
       SRP54  82 ekidvvlvDTaGrlqndkelmeel...kkikkvvkpdevllvldattgqeav 130
                 +++ v+l DTaG  qn ++++e +   k++k++ ++d +ll++d + ++e  
  CCD23184.1 304 DGYKVILTDTAGIRQNSTDIIEKMgiaKALKSIKSSDVSLLIIDISEEKEEE 355
                 5789******************9944445566668999999*9988776654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0006      0.56      27     142 ..     261     382 ..     236     400 .. 0.68
   2 ?    0.1   0.0      0.96   9.1e+02      75     145 ..     415     484 ..     394     489 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0006
      AAA_16  27 vllsGesGvGKsslvrellralekdggif..lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala................. 106
                 + l+G +  GKsslv++l    e++  i+  + g++++         + ++l+  + ++ +l++  +a  ++ ++ + e ++                 
  CCD23184.1 261 ISLIGKPNAGKSSLVNCLTS-NETS--IVsdIPGTTRDV--------VDSYLDI-DGYKVILTD--TAGIRQNSTDIIEKMGiakalksikssdvslli 345
                 6799***************5.4444..444699999999........3333322.334444444..345666666666666655666666666677777 PP

      AAA_16 107 .avpelagaeasrllellkrllallsrderplvlvlD 142
                  +++e + +e++ + +++++l++l++ +++   ++l 
  CCD23184.1 346 iDISEEKEEEEEEITNAINNLIELSEAEDKRSMIILN 382
                 7777777777799999999999999988887777765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.96
      AAA_16  75 alareellrqlldeaesaeleawrekleeala..avpelagaeasrllellkrllallsrderplvlvlDdlq 145
                 +++  + +++l d++++ e+   +e l+e+     ++ +++ + +++l  + ++++  ++ e+ +v+  +dl 
  CCD23184.1 415 CITG-DGIKDLTDMLTK-EFKTLSEDLDESSPilMSQRVTDILQNDVLFGIESFINSVAN-EKDIVMATEDLN 484
                 4534.555555555333.555555555555553323344444449999999999988888.555999999986 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       2.9   2.7e+03      25      45 ..     124     145 ..     123     254 .. 0.45
   2 ?   13.1   3.1   0.00011       0.1       8      96 ..     255     356 ..     249     437 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.9
                 HHHHHHHTTSS--SEE.EEEET CS
                 xxxxxxxxxxxxxxxx.xxxxx RF
    ABC_tran  25 StLlkllagllkpteG.eilld 45 
                 S +lk +  l +p+ G ei++ 
  CCD23184.1 124 SAILKSIQSLNDPQRGvEIRYA 145
                 6677777777777777344333 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00011
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG............B-HHHCCHCEEEE-SS--S-TTSB.HHHH.............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxx.xxxx.............. RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke............qeleslrkeigvlpqepqlfpelt.vren.............. 79 
                 lk g k+ ++G+  aGKS+L+++l+ +++    +i    +d+ +            +++   r+++  + ++  + + l+ ++++              
  CCD23184.1 255 LKDGIKISLIGKPNAGKSSLVNCLTSNETSIVSDIPGTTRDVVDsyldidgykvilTDTAGIRQNSTDIIEKMGIAKALKsIKSSdvslliidiseeke 353
                 688999**********************99988884444444443333322222224444444444444444444444332333344444444444333 PP

                 HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxx RF
    ABC_tran  80 esdeeiekalsklglke 96 
                 e              +e
  CCD23184.1 354 E--------------EE 356
                 2..............22 PP

>> Beta_protein  Beta protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.59   5.6e+02     158     190 ..     209     239 ..     161     247 .. 0.79
   2 ?    9.5   0.4   0.00062      0.58     128     197 ..     315     381 ..     305     382 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.59
  Beta_protein 158 ldlilDlgavlkgssdaaeaalrellallpead 190
                   l+ i+D+g  ++++++++ +++++++a++++++
    CCD23184.1 209 LTAIIDFG--EDIEMSDVDSLVNKVKAEITQIK 239
                   55699***..66777899999999999988876 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00062
  Beta_protein 128 avRldqddfsaei.teeierllaalgleeseldlilDlgavlkgssdaaeaalrellallpeadwrsvvva 197
                    +R +++d+   i +  i+++l++++ + +  +li+D  + ++ +++++ +a+++l+ l + +d+rs++++
    CCD23184.1 315 GIRQNSTDI---IeKMGIAKALKSIKSS-DVSLLIIDISEEKEEEEEEITNAINNLIELSEAEDKRSMIIL 381
                   455555554...2245677777777755.3499****************************9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1378  (0.0768587); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 3359.53
//
Query:       CCD23185.1  [L=447]
Description: hypothetical protein NDAI_0B01510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.8e-158  526.2  26.3   6.7e-158  526.0  26.3    1.0  1  Glyco_hydro_76  Glycosyl hydrolase family 76


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  526.0  26.3  3.7e-162  6.7e-158       1     365 [.      29     393 ..      29     394 .. 0.98

  Alignments for each domain:
  == domain 1  score: 526.0 bits;  conditional E-value: 3.7e-162
                     SXHHHHHHHHHHHHHHCETTECCTCTCBSCES-GHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHCCCTCEE-SSSTTCTCSSEHHHHHHHHHH CS
  Glyco_hydro_76   1 siksaaatiakgllkyYkgnesggtpgnlpdpyywWeagalfgalidywrltgdstyndlitqallaqagenydympanqsrtegnDDqafwgla 95 
                     s+++++a +a+gl++yY+g+++g+t+g++++pyywWeag ++g+++dyw +++++tyndli +all+q+gen+dy+p nqs+tegnDDqafwg+a
      CCD23185.1  29 SLENDTALVAYGLMDYYNGDQYGQTVGMFSNPYYWWEAGGAWGTMLDYWFFMENDTYNDLIMSALLHQTGENNDYIPLNQSTTEGNDDQAFWGIA 123
                     5778999**************************************************************************************** PP

                     HHHHHHH......H--HHHHHHHHHHHHHHHHCB-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHH CS
  Glyco_hydro_76  96 amtaaernfpep.tdepswLalAqavfntqasrwdeetcgGGlrWqiftwnsgydyknsisngplfqlaarLarytgnetYlewAekvwdWvedv 189
                     amtaaernf++p +++p+wL lAqavfnt+a rwd ++cgGGlrWqif wnsgydykns+sng+lf+laarLarytgn++Y++wAek++dW+ dv
      CCD23185.1 124 AMTAAERNFTNPpESSPQWLYLAQAVFNTMALRWDAQNCGGGLRWQIFVWNSGYDYKNSVSNGALFHLAARLARYTGNQSYVDWAEKTYDWMSDV 218
                     *********************************************************************************************** PP

                     SCS.BTTTS-B-SEEETTTCCEEEE---HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCEECTTEEEEEE-TTSTTCCTTHHHHHHH CS
  Glyco_hydro_76 190 gli.ddedwlvyDgasvednctdinklqwtYnqGtylsgaaylynaTgdekWldrvkgllnatlstffpdgnilyevacepsekcnnDqrsFkgi 283
                     gli + ++ +vyDg+s+e+nct+i+ +qw+YnqG++l+gaaylyn+Tg++ Wl+r+ +ll+at s+ff++ +i+yevac+p+ +cnnDqrsFk++
      CCD23185.1 219 GLIsNGTQKYVYDGTSIETNCTTITSYQWSYNQGLMLAGAAYLYNFTGSTIWLNRTMDLLDAT-SVFFNN-SIMYEVACQPTGTCNNDQRSFKSY 311
                     ***8888999****************************************************9.999999.9*********99************ PP

                     HHHHHHHHH..SHHHHHHHHHHHHHHHHHHHTTTB...TTTSB-TTTTTSSCCHHHHHHHHCCHHH............HHHH CS
  Glyco_hydro_76 284 larwlaltaqlapetadtiepllrasaeaaakscsggsdgttcglkwlkgtwdgdaglgeqmsaleviqallveekkaplta 365
                     lar+l+ltaql+  t+++i+++l++sa a+a+scsgg+dg+tcgl+w+ ++wdg +glgeqmsal v+ ++ v +++ap+++
      CCD23185.1 312 LARFLGLTAQLVTITQSRIMNWLNTSAIAVAHSCSGGTDGHTCGLNWFDNGWDGYYGLGEQMSALDVLVNTRVLDRPAPYNS 393
                     ***************************************************************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3176.39
//
Query:       CCD23186.1  [L=165]
Description: hypothetical protein NDAI_0B01520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-50  168.0   0.0      1e-49  167.8   0.0    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.18   11.5   0.0    1.6  1  Prok-E2_B  Prokaryotic E2 family B
       0.19   12.0   0.6       0.28   11.5   0.5    1.7  1  RWD        RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.8   0.0   1.7e-53     1e-49       1     138 [.       8     157 ..       8     159 .. 0.98

  Alignments for each domain:
  == domain 1  score: 167.8 bits;  conditional E-value: 1.7e-53
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGS............ CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLk............ 87 
                 rl kel++l+k++p+gi a++ +++nlf w++l++gp+dt Yegg+F+++l+fp+dYPl+pPk++f+ +i+HPn++++Gevc++iL+            
  CCD23186.1   8 RLLKELQQLNKDSPPGIVAGPANENNLFVWDCLVQGPPDTAYEGGIFNARLDFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHspgddpnmyela 106
                 799***********************************************************************************************9 PP

                 TTT--TTSHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHH CS
      UQ_con  88 eekWspaltlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvke 138
                 ee+Wsp++++e++lls++s+l+epn es++n++a+ l++++r+e++++vk 
  CCD23186.1 107 EERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRKEFERQVKL 157
                 999*********************************************975 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.1e-05      0.18      33      78 ..      49      90 ..       5     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.1e-05
   Prok-E2_B 33 tsggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLCl 78
                 +gg+++ rl +p+++pl+pp+   +      l p i++ +g++C 
  CCD23186.1 49 YEGGIFNARLDFPKDYPLSPPKLTFTPSI---LHPNIYP-NGEVCI 90
                389******************99887666...8999999.999996 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   4.7e-05      0.28      54      78 ..      53      77 ..       2     129 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.7e-05
                EEEEEEEE-SSTTSS--EEEEEECC CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD 54 slkleiklpeeYPeeaPiislsste 78
                 ++   ++p++YP ++P+++++ + 
  CCD23186.1 53 IFNARLDFPKDYPLSPPKLTFTPSI 77
                5778899*************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.48
# Mc/sec: 1044.17
//
Query:       CCD23187.1  [L=512]
Description: hypothetical protein NDAI_0B01530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-63  216.1   0.0    1.6e-63  215.6   0.0    1.2  1  Amino_oxidase  Flavin containing amine oxidoreductase
    9.5e-10   38.6   0.2    2.1e-09   37.5   0.2    1.6  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
      1e-06   28.2   0.0    0.00041   19.7   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    3.1e-05   23.2   2.2    0.00065   18.9   0.2    2.2  2  GIDA           Glucose inhibited division protein A
    3.2e-05   23.7   0.5     0.0007   19.3   0.1    2.2  2  DAO            FAD dependent oxidoreductase
    3.4e-05   23.1   0.6    5.6e-05   22.4   0.6    1.3  1  FAD_binding_2  FAD binding domain
    6.1e-05   22.6   0.0     0.0001   21.8   0.0    1.4  1  FAD_oxidored   FAD dependent oxidoreductase
     0.0003   19.6   1.3     0.0082   14.9   0.3    2.1  2  HI0933_like    HI0933-like protein
    0.00039   19.8   0.1     0.0007   18.9   0.1    1.3  1  FAD_binding_3  FAD binding domain
     0.0004   19.7   4.1     0.0027   17.0   0.5    2.2  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
     0.0066   16.5   0.4      0.032   14.3   0.1    2.3  3  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.033   13.4   0.2      0.058   12.6   0.2    1.3  1  Thi4           Thi4 family
      0.069   12.4   0.0       0.12   11.6   0.0    1.3  1  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
      0.086   11.9   0.5       0.14   11.2   0.1    1.5  2  Lycopene_cycl  Lycopene cyclase protein
        0.1   12.7   0.1        0.3   11.2   0.0    1.8  2  Tricorn_C1     Tricorn protease C1 domain
        0.1   13.2   2.9       0.41   11.2   0.2    2.8  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
       0.12   12.9   2.1       0.23   12.1   0.1    2.4  2  PepSY_like     Putative beta-lactamase-inhibitor-like, PepSY-


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.6   0.0   1.5e-66   1.6e-63       1     451 [.      14     505 ..      14     506 .. 0.82

  Alignments for each domain:
  == domain 1  score: 215.6 bits;  conditional E-value: 1.5e-66
                    HHHHHHHHHHHHTT.EEEEEEESSSSSBTTS-EEEETT.EEEESS--EEETTTHHHHHHHHHTTCCCCEEEESCCGCEEEEETTEECC.TTEECHH CS
  Amino_oxidase   1 laGLaaArqLlsaG.fdVtvlEardrvGGRirtvrsdG.ylielGamwftgagnpllellkelgledslslpdpgapkrvlskggref.pgdlspv 93 
                    +aGL aA+qL ++G  +++v+Eardr+GGR++tv   +  +++lGa w+++    +  l+ e  le++ +++d++ +++v + +  +f +++  ++
     CCD23187.1  14 IAGLKAASQLYANGiKNCLVVEARDRLGGRLQTVSGYNcSKYDLGAAWHHD--ILMNGLFTE-ELELNKKCKDSESKRFVFDDNQPIFvDEERGRL 106
                    8************************************98************..777777777.777888899999666666666666676666666 PP

                    HHHHHHHHHHHHHH...CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTSTTTTCBHH CS
  Amino_oxidase  94 paewealleqgals...aellsleeklrlgleallqktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfagdpselsak 186
                    ++ +e+ le+ +      ++l++ ++l  ++++++       d   k+l e++  l +++    ++          ++le+++g+ +    + sak
     CCD23187.1 107 DHDPEMILEFIDKEidkYTELEFYQSLDVKDCSFH-------DIILKYLFERRDTLTDDQIRYSAQ--------ICRYLELWHGIGW---KDMSAK 184
                    77777777711111222223555555555555555.......333333333333333333333333........5555559***955...999*** PP

                    HHTCCCCHHHHHTSCCCEETTHTHHHHHHHHHTTTTEEEETSEEEEEEEEETTCEEEEETTSTEEEESEEEE-S-HHHHH..............SS CS
  Amino_oxidase 187 lalpllwelegfggslllprgGlsqlpealaeelrgldirlntrVkeikregdgvtvtledgevveaDaVvvTvplgvlk..............ai 268
                     ++++++ ++    +       +++++e+++++ ++ +i lnt+Vk i+r g  v v+l +ge++++ + vvTvp++vl               +i
     CCD23187.1 185 GTYFDHQGRNALVTN-------FDSIIERISSSFPKEWIVLNTEVKTIERKGKIVVVKLNNGEEYTCEYTVVTVPQSVLElstkdpnditntkgRI 273
                    ***************.......****************************9999****************************************** PP

                    EEESCCSHHHHHHHHHSEEEEEEEEEEEESSGGSGCST............SECE..............CECCCEEETTTEEEEECC.....ECCCS CS
  Amino_oxidase 269 lfsPplpdekaeairnlgfgsvnkvilefdrkfwedna............lgqg..............vlvseltttlgeafissd.....fpsra 333
                    +f Ppl    +ea+r+++fg++ kvi+efd ++w +++                              +++s ++t+ ++  ++ d     ++  +
     CCD23187.1 274 EFIPPLNARIQEAFRKMHFGGLGKVIFEFDACCWTKKGsriftlahsketF--VnnvreagswdelikKSESVNSTDKPKDLTCWDypllfVDLAK 367
                    ******99*****************************96666655555540..0555555566668888999999999999999888888544444 PP

                    TTTEEEEEEEEECHHHHHHHTTS..-HHHHHHHHHHHHHHHHT...................GTSSTCSEEEEEECCTETTTSSSEEE.BTTHHHH CS
  Amino_oxidase 334 ppgkglvllvyvggdaanelesl..sdeelvqavlrdLrklfg...................eevpepkatlvtrWhtdplargsysyvsvgpghe 408
                     ++++  l++++     n++es+  +++ +++ ++ +L k++                    +  p+ k++  t+W+ dp++rgsys++ +  + +
     CCD23187.1 368 STDVPT-LVMLMQRPLSNYIESIgdDKQRIFEFFQPVLDKIMStldtesvinemfgattasnKIGPKLKNIMTTNWSIDPYSRGSYSTCFPEDDAL 462
                    454444.666666***********99999**************999988888888887776666666666************************** PP

                    HHHHHHCHHCSTTEEE.SGGGCTTTTTSHHHHHHHHHHHHHHH CS
  Amino_oxidase 409 dydplakpegdprlffAGehtsreypgtvegAilSGlraAari 451
                    ++   +++ +d+r+ fAGeht+++  g+v+g ++SG+r+Aa i
     CCD23187.1 463 EMIIAMSSGQDSRIRFAGEHTIMDGAGAVHGSWESGKREAAYI 505
                    ****************************************987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.2     2e-12   2.1e-09       1      54 [.       9      64 ..       9      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 2e-12
                   EE--SHHHHHHHHHHHCCTE.EEEEE-SSSSSSGGG-EECETT.CEECTS---EEE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagf.dvlllekrdrlGGraasyevpg.vrvdygahifhg 54
                   I+GaG++Gl aA+ L  +g+ ++l++e+rdrlGGr+++++  +  ++d+ga + h+
     CCD23187.1  9 IIGAGIAGLKAASQLYANGIkNCLVVEARDRLGGRLQTVSGYNcSKYDLGAAWHHD 64
                   9*****************9956*****************99555*********998 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.9e-07   0.00041       1      37 [.       5      41 ..       5     113 .. 0.75
   2 !    6.4   0.0    0.0043       4.5     199     235 ..     215     251 ..     185     264 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.9e-07
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlvelegtcln 37
                 k+v++iG+G+AGl+aa +l ++g+k  lv + +  l+
   CCD23187.1  5 KQVIIIGAGIAGLKAASQLYANGIKNCLVVEARDRLG 41
                 58************************99943333333 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0043
                  EEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 199 evklgtsvkeidgngeklevvledgeeidadlvvvav 235
                   ++l+t+vk+i+++g+ + v+l++gee+ +++ vv v
   CCD23187.1 215 WIVLNTEVKTIERKGKIVVVKLNNGEEYTCEYTVVTV 251
                  5889***********9555**********99999876 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   6.2e-07   0.00065       1      36 [.       6      41 ..       6      55 .. 0.91
   2 ?    3.9   0.1     0.023        24     113     147 ..     217     250 ..     200     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.2e-07
                CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGGTT CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLithkldtia 36
                +vi+iG+G AG+ AA ++   G+k  L+++  d+++
  CCD23187.1  6 QVIIIGAGIAGLKAASQLYANGIKNCLVVEARDRLG 41
                69**************************99988876 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.023
                 EEES-EEEEEECTTEEEEEEETTS-EEEECEEEE- CS
        GIDA 113 iieeeveeliveekkvkgvvtedgetikakavvia 147
                 +++ ev+ +  +++k+ +v++++ge+++++ +v++
  CCD23187.1 217 VLNTEVKTI-ERKGKIVVVKLNNGEEYTCEYTVVT 250
                 678899999.559********************98 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   6.7e-07    0.0007       2      35 ..       7      42 ..       6      76 .. 0.89
   2 ?    2.5   0.0     0.086        91     163     203 ..     216     253 ..     215     295 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6.7e-07
                EEEECTSHHHHHHHHHHHHTT...EEEEESSSSTTSS CS
         DAO  2 vviiGGGiiGlstAyeLarrg...Vtllekgdiagsg 35
                v+iiG+Gi+Gl +A +L + g    +++e++d++g g
  CCD23187.1  7 VIIIGAGIAGLKAASQLYANGiknCLVVEARDRLG-G 42
                9****************999999********9999.3 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.086
                 EEESECEEEEEEEETCEEEEEEECTEEEEEEEEEEE--GGG CS
         DAO 163 ilegtevtgleeedgkvwgverttpgendaadavVnaaGaw 203
                 i+++tev+ +e++ gk++ v+  ++ge+ ++++ V++  ++
  CCD23187.1 216 IVLNTEVKTIERK-GKIVVVK-LNNGEEYTCEYTVVTV-PQ 253
                 789*******875.6777773.3347775568888876.55 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.6   5.3e-08   5.6e-05       2      39 ..       7      45 ..       6      51 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 5.3e-08
                   EEEE--SHHHHHHHHHHHHTTT.-EEEEESSSGGGSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGl.kvavvekeqefggata 39
                   vi+iG+G+AGL AA ++  +G  +++vve  ++ gg ++
     CCD23187.1  7 VIIIGAGIAGLKAASQLYANGIkNCLVVEARDRLGGRLQ 45
                   9********************99*********9999554 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   9.5e-08    0.0001       2      97 ..       7     121 ..       6     160 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 9.5e-08
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGak.vlLveergvlGGlltsglvatdig.....nkaeeqvvtgiareflerlrq.rggarlk...krskwn...... 82 
                   v+++G+g+aG+ AA +   +G k  l+ve r++lGG l    + +  +      ++++ + +g++ e le +++ +++++++   ++   n      
    CCD23187.1   7 VIIIGAGIAGLKAASQLYANGIKnCLVVEARDRLGGRLQTVSGYNCSKydlgaAWHHDILMNGLFTEELELNKKcKDSESKRfvfDD---Nqpifvd 100
                   9********************76166689*******887766666555444455555599999999999988885444422222222...1233345 PP

  FAD_oxidored  83 ......tfepevakavleeml 97 
                          ++pe+  + +++ +
    CCD23187.1 101 eergrlDHDPEMILEFIDKEI 121
                   555555677777777666665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   7.8e-06    0.0082       2      40 ..       6      45 ..       5      52 .. 0.83
   2 ?    3.4   0.0     0.023        25     127     161 ..     217     250 ..     201     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 7.8e-06
                 SEEEE--SHHHHHHHHHH.HHTT--EEEE-SSSSS-HHHH CS
  HI0933_like  2 dviviGgGaAGlmaAisa.akrgkrVlllekakklgrKil 40
                 +vi+iG+G AGl aA ++ a+  k+ l++e+ ++lg +++
   CCD23187.1  6 QVIIIGAGIAGLKAASQLyANGIKNCLVVEARDRLGGRLQ 45
                 89****************55555779999**999998775 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.023
                  E-S--EEEEECETTE.EEEEE.TTEEEEESEEEE- CS
  HI0933_like 127 rletevksvekeedgkfrvktkseeeleadklvlA 161
                   l+tevk++e+ +++++ vk++++ee++++++v++
   CCD23187.1 217 VLNTEVKTIER-KGKIVVVKLNNGEEYTCEYTVVT 250
                  67899****77.666699***************98 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   6.6e-07    0.0007       3      33 ..       6      37 ..       4      43 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.6e-07
                   EEEEE--SHHHHHHHHHHHHTTHHEEEE.ESS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlv.ekr 33
                   +V+I+GaG aGl +a+ L   G++++lv e r
     CCD23187.1  6 QVIIIGAGIAGLKAASQLYANGIKNCLVvEAR 37
                   8***********************66550544 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.5   2.5e-06    0.0027       1      30 [.       8      37 ..       8      46 .. 0.92
   2 ?    3.8   0.2     0.027        29      98     130 ..     216     249 ..     198     251 .. 0.60

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.5e-06
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg 30
                 iIiGaG aGl+aa +l  +g+++ l++E  
   CCD23187.1  8 IIIGAGIAGLKAASQLYANGIKNCLVVEAR 37
                 8***************************75 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.027
  Pyr_redox_3  98 iklfeeVesvkkedegfevetske.tyeAkkvii 130
                  i l++eV++++++++  +v+ +++ +y++++ ++
   CCD23187.1 216 IVLNTEVKTIERKGKIVVVKLNNGeEYTCEYTVV 249
                  3445555555555555555555543555555444 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1     3e-05     0.032      11      42 ..       3      34 ..       1      55 [. 0.91
   2 ?   -3.3   0.0       7.9   8.4e+03      80     101 ..     207     228 ..     193     237 .. 0.61
   3 ?   -1.7   0.0       2.6   2.8e+03      97     118 ..     346     372 ..     331     380 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3e-05
                  TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEE CS
  Shikimate_DH 11 kekkvlliGaGemaelvakhLlakgvkkvvva 42
                  ++k+v++iGaG  + ++a++L+a+g+k+ +v+
    CCD23187.1  3 QDKQVIIIGAGIAGLKAASQLYANGIKNCLVV 34
                  689************************99987 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.9
                   EE-SSSSS-SB-HHHHHCCHHH CS
  Shikimate_DH  80 isataseepilekeeveealkk 101
                   is+   +e i+ + ev+ + +k
    CCD23187.1 207 ISSSFPKEWIVLNTEVKTIERK 228
                   4555567888888888877644 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.6
                   CCHHH.S.......EEEEE--SS-SB- CS
  Shikimate_DH  97 ealkkrk.....kplllvDiavPRdve 118
                   ++ k+++      pll+vD+a   dv 
    CCD23187.1 346 STDKPKDltcwdYPLLFVDLAKSTDVP 372
                   4444443333335789****9888876 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   5.5e-05     0.058      18      55 ..       5      42 ..       2      49 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.5e-05
                EEEEEE--SHHHHHHHHHHHHCTTS-EE.EEESSSS--T CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdlkva.ilersvspGG 55
                  v+i+GaG +GL aa  l  + ++k + ++e++  +GG
  CCD23187.1  5 KQVIIIGAGIAGLKAASQLYAN-GIKNClVVEARDRLGG 42
                579******************9.8886526788877777 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.12      29      47 ..       5      23 ..       2      74 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                 -EEEEESTSHHHHHHHHHH CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiata 47
                  +v++iG+G+aGl+A++  
   CCD23187.1  5 KQVIIIGAGIAGLKAASQL 23
                 589************9864 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00013      0.14       2      30 ..       7      33 ..       6      58 .. 0.85
   2 ?   -4.0   0.0       5.6   5.9e+03     101     140 ..     214     252 ..     204     256 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvli 30
                   v++iGaG Agl+ A +l   + g+k +l+
     CCD23187.1  7 VIIIGAGIAGLKAASQL--YANGIKNCLV 33
                   8****************..8888887765 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5.6
  Lycopene_cycl 101 gvklleakvesveeeeageslvvleggrkirarlvvdarg 140
                    + + l+  v+ +e + +  ++v l++g++  +   v+  +
     CCD23187.1 214 EWIVLNTEVKTIERKGK-IVVVKLNNGEEYTCEYTVVTVP 252
                    56678888888888888.8888899999888888777655 PP

>> Tricorn_C1  Tricorn protease C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       8.5     9e+03      24      34 ..     173     183 ..     169     184 .. 0.77
   2 ?   11.2   0.0   0.00029       0.3      26      62 ..     390     426 ..     385     427 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8.5
                 HHHHHHHHHHH CS
  Tricorn_C1  24 mhgvDWeavke 34 
                  hg+ W+++ +
  CCD23187.1 173 WHGIGWKDMSA 183
                 6999**99875 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHHHGGGGG--SHHHHHHHHHHHHHTT-- CS
  Tricorn_C1  26 gvDWeavkerYepllprvatrdeladllsemlgeLnt 62 
                 g D + + e ++p+l+++ +  + + +++em+g   +
  CCD23187.1 390 GDDKQRIFEFFQPVLDKIMSTLDTESVINEMFGATTA 426
                 789999***************************8766 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00039      0.41       2      35 ..       7      41 ..       6      47 .. 0.88
   2 ?    0.8   0.2      0.69   7.2e+02      57      79 ..     216     237 ..     213     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00039
                EEEECSSHHHHHHHHHHHHTT.SEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelg.kkVtvversdkll 35
                v+++G+G  gl +A+ l + g k+  vve++d+l 
  CCD23187.1  7 VIIIGAGIAGLKAASQLYANGiKNCLVVEARDRLG 41
                89***************88886788*******998 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.69
                 EECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox  57 vllntkveeiegsedgvesvklk 79 
                 ++lnt+v+ ie +++    vkl+
  CCD23187.1 216 IVLNTEVKTIERKGKI-VVVKLN 237
                 6899999999988874.336665 PP

>> PepSY_like  Putative beta-lactamase-inhibitor-like, PepSY-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.9   4.1e+03      33      58 ..     114     140 ..     108     160 .. 0.74
   2 ?   12.1   0.1   0.00021      0.23      38      72 ..     201     243 ..     178     249 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.9
                 GGGS-HHHHHHHHHH.TTTEEEEEEEE CS
  PepSY_like  33 lsilpkavlkaikns.ypdekvtkier 58 
                 l++++k++ k+ + + y++ +v++  +
  CCD23187.1 114 LEFIDKEIDKYTELEfYQSLDVKDCSF 140
                 567888888888888777777766555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00021
                 HHHHHHHHHHTTT......EEEEEEEECSSEEEEEETT..SEE CS
  PepSY_like  38 kavlkaiknsypd......ekvtkierkkkeyeielen..eie 72 
                 +++++ i++s+p+      ++v+ ierk k ++++l+n  e+ 
  CCD23187.1 201 DSIIERISSSFPKewivlnTEVKTIERKGKIVVVKLNNgeEYT 243
                 4678888888888888899*******************76555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3647.23
//
Query:       CCD23188.1  [L=803]
Description: hypothetical protein NDAI_0B01540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.1e-20   70.8  11.6    9.1e-20   70.8  11.6    2.6  3  Fungal_trans  Fungal specific transcription factor domain
    1.1e-10   41.5  13.4    2.3e-10   40.4  13.4    1.6  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       0.3   2.7e+03     226     230 ..     166     170 ..     128     221 .. 0.50
   2 !   70.8  11.6     1e-23   9.1e-20       2     204 ..     290     513 ..     289     565 .. 0.79
   3 ?   -0.2   0.4     0.045     4e+02     177     224 ..     654     700 ..     640     764 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.3
  Fungal_trans 226 kilsk 230
                    i+s 
    CCD23188.1 166 AIVSP 170
                   22222 PP

  == domain 2  score: 70.8 bits;  conditional E-value: 1e-23
  Fungal_trans   2 drffsnfhpqfpilhkpsflpkt.......ssenssksayaspllllailalGalfsesetkesnssltses....................qefia 71 
                     +f+ ++  f+i+h+  f++++       +++++ +s++ +  +l++i+++  +f+e    e++++  + +                    ++   
    CCD23188.1 290 TFYFKEINKPFNIIHESMFWDQYnnvfiqqEKQKNIESTKLFKSMLYLIIITTLRFQEGFLEENDNDIPHTKltkeekiileslksekaledSM--- 383
                   67**************************99899999999*****************99777777655555556677677777777777654333... PP

  Fungal_trans  72 fplraeilihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktial 168
                   f ++++i++  +++ + +s++ +qs+ll+ +y+ t++++++ +  +g a++l+  ++Lh n++         +++ e+  + +++wa+F++Dk+i++
    CCD23188.1 384 FNYSYSIIS--KLTFEWESFELIQSWLLITFYLRTCYRQTSSWHALGQAINLCNGMSLHLNEFPHI------HSKYEESKLFHCFWACFIIDKFISF 472
                   335666666..******************************************************9......6666677789*************** PP

  Fungal_trans 169 klGrppl..lddsqinlp...LPcddddlwesddaseetlv 204
                   +lGr +l  l+ + ++ p     c+d + w+s ++ + + +
    CCD23188.1 473 QLGRFYLlpLPIHHMEFPsesNRCNDGTDWFSKETIQLFHL 513
                   ******62455555555555555666666666655555544 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.045
  Fungal_trans 177 ddsqinlpLPcddddlwesddaseetlvetklsneeksrkiasfllaL 224
                     s++n++L +  d +w+s+++s+ +++ t++s+  ++  + s l++L
    CCD23188.1 654 QSSKVNILLKKAID-IWNSLENSNPKNKPTMISQCLWCLRMLSKLSRL 700
                   66777888888888.999999999888887744444444444444444 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4  13.4   2.6e-14   2.3e-10       1      35 [.      23      55 ..      23      58 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 2.6e-14
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCT CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfyse 35
                +aC  C+k+KvKCd++kP CsnC+k++++Ct y+ 
  CCD23188.1 23 RACAICKKRKVKCDGMKP-CSNCIKRSKDCT-YTT 55
                59****************.************.765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1213  (0.0676558); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5406.94
//
Query:       CCD23189.1  [L=991]
Description: hypothetical protein NDAI_0B01550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (991 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4818  (0.268727); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                       274  (0.0152825); expected 17.9 (0.001)
Passed Fwd filter:                       118  (0.00658152); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 3.45u 0.47s 00:00:03.92 Elapsed: 00:00:00.92
# Mc/sec: 3267.63
//
Query:       CCD23190.1  [L=531]
Description: hypothetical protein NDAI_0B01560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-52  176.8   0.1    8.5e-52  176.4   0.1    1.1  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.4   0.1   4.7e-56   8.5e-52       6     429 ..      71     486 ..      67     517 .. 0.79

  Alignments for each domain:
  == domain 1  score: 176.4 bits;  conditional E-value: 4.7e-56
                 EHHCCHCHHHHTTTCCHHHHHHHHHHHH.-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGHHHHHHHHHHHH CS
        p450   6 plplvgnllqlgrkeelhevlrklqkky.gpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfangekwkklRrflt 103
                 ++p++g +l+   + ++ e   + +k y g++  + + +k v++ s+ ++ +++++ + ++++    ++ +++     + ++ +f +g+ +   R+ l+
  CCD23190.1  71 WYPIIGPFLESL-DPKFEE---YKAKWYsGDLSCVSIFHKFVIISSTRDISRKIFQSS-KFVKPCVVDVAVKI----LRPTNWVFLDGKPHIDYRKSLN 160
                 566666666654.222222...223334466666666666666666666666666666.57777766666666....7899****************** PP

                 HHHTSHSTT.THHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHTCC CS
        p450 104 ptltsfgkl.sleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpllkyl 201
                   +t++ +l ++ +  ++++++ +ek+ + ++e+      +++++ + ++++ + + a ++ + +e+  ++ k  ++++ ++     +l++++ ++ y 
  CCD23190.1 161 GLFTKS-ALaKYLPSQQKVMDKYLEKFIQLSKEN--NYEPQIFFHEMREILCALSLRAFCGDYITED--QIRKIADDYYLVT--AALELVNFPIIIPYT 252
                 ******.999************************..788899****************999888885..5888888887555..556788888899999 PP

                 SCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHC......TTCTCT......SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        p450 202 ptkllrklkeavkklkdlldklieerretldsakksrrdfldalllak......kekkge......sklsdeelaatvlellfaGvdTtsstlswaLye 288
                  t+++++  +    + ++ + + ++ ++ +     ++   +da ++ +      ++   e        +s++e+ + ++++lfa++d +ss  +w +  
  CCD23190.1 253 KTWYGKRTADN---AMKIFESCAQKSKDYIAAG-GEPICVMDAWCKLMhdakneND---EnsrilhRDFSNKEISEAIFTFLFASQDASSSLACWLFQI 344
                 99999999855...5666666666666666666.4455555555555554464433...23569999******************************** PP

                 HHHSHHHHHHHHHHHHHHCCTTT..T-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCE.EETTEEE-TT-EEEEEHHHHHT-TTTSSSTTS-- CS
        p450 289 LaknPevqeklreEidevlgdkr..eptyddlqklpyldavikEtLRlhpvvplllpRevtkdv.virgylipkGtevivnlyalhrdpevfpnPeeFd 384
                  a++P+v +k+reE   v +++   e+t+d + +++y+++vikEtLR++p+v   +p +v++   v ++y+ pkG++ i+ ly  ++dpev++nP+eF 
  CCD23190.1 345 VADRPDVLQKIREEQLAVRNNDLstEITIDLIDQMKYTNMVIKETLRYRPPVL-MVPYVVKEKFpVTPNYTAPKGSMLIPTLYPALHDPEVYENPDEFI 442
                 **************99999554458****************************.99****997625577****************************** PP

                 GGGGB-TTSCTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHH CS
        p450 385 peRFldekgnskrksfaflPFGaGpRnCiGerlArmelklflatl 429
                 peR+ + +++s   +  +l FG Gp+ C+G+   +     +l+++
  CCD23190.1 443 PERWVEGSKAS-EAKKNWLVFGCGPHVCLGQTYVMITFAALLGKF 486
                 ********955.99****************986555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3593.83
//
Query:       CCD23191.1  [L=514]
Description: hypothetical protein NDAI_0B01570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-81  274.7  48.0    2.3e-81  274.4  48.0    1.1  1  BUD22     BUD22


Domain annotation for each model (and alignments):
>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.4  48.0   1.3e-85   2.3e-81       1     432 []      77     514 .]      77     514 .] 0.75

  Alignments for each domain:
  == domain 1  score: 274.4 bits;  conditional E-value: 1.3e-85
       BUD22   1 lhhalkkLrkalkkakgferqklvkklKtakk....ekkskklerleeelealKslDleqiAekilaskllktkklaese.......elpealks.... 84 
                 +hh +kk +k ++k  +   +  v k+K+++      kk+ +l+ + + + ++Ks+       ki ++kl+ ++k ++ +       +      +    
  CCD23191.1  77 IHHFEKKFSKFFNKFLTTSSKSSVWKKKKLDVvlddVKKNYDLDLFIKLICMSKSI-------KISINKLKFAQKKKNLKvsndegkQ------Tlvpk 162
                 69****************************88988666667777777*********.......7777777666555554422233333......14445 PP

       BUD22  85 ..........ikdkkpksnpeek.neelektkalenvtsrLlnsktvkevveeivesvkkllgiek....kkkkkeeekkkkkkkkkkkkkkeeeeeee 168
                           ++dk++++np+++ ne++++ k+++ + s ++n k++ke +e+++++++ +lgi+k    k   +++e++++++++++k+k       +
  CCD23191.1 163 wftlhsywiiNQDKSNEFNPSRIwNEVVMNIKNCDSLISLVMNDKECKEIIENFENGLDFFLGINKqnrlK---QKQEQEQEQEQEQEKSK-------K 251
                 5599999**99*******************************************************42211...22222222222222222.......2 PP

       BUD22 169 sdkeeesedsedeekeeseddeeeeeededdedaeedeedeeaeerelaqydglla.sddeded.............eyneetdeesseesdssdsses 253
                 s k+e+++ s+++ +e+++++e+e+ ++ d++     ++++ +ee+ +++y+glla s+de+e+             +yne+tdee+s+++d++ s+e 
  CCD23191.1 252 STKDENESVSDNSVNEREDEEEDESGSEIDNQ-----DHADIDEEELARHYEGLLAaSSDEEEEegnavedtldttiNYNEVTDEEPSSDEDEDTSDEP 345
                 22333333333322233333333333333333.....344677899999****5555777776647777777777777777777777666555544432 PP

       BUD22 254 asesesessekkkkkkkkkkkkakakkvtsstfLPsLmgGYisGseddeasdae.......esvapkRKNRrGQrARraIwEKKYGknAkHvkkekeke 345
                             ++kk+kk          +  +LP+Lm+GY+sG+e++e +++e       +s++p+RKNRrGQrARr+IwE+KYG++AkH++ke e++
  CCD23191.1 346 ------------SRKKAKK----------NVVKLPELMAGYYSGGESSEDEKREdrvakeqMSNKPQRKNRRGQRARRKIWEQKYGSGAKHIQKEVEAK 422
                 ............2233333..........4689*************99555555669999999************************************ PP

       BUD22 346 keerkerqkeyeerdsGWdakrgakaeedk....sekksksk.....akkkkkkkkddkkakaaaekelHPSWeAkkkakekkkaakfqGKKIvFD 432
                  +er++rq+eyeer+    akr+akae+ +    +++ +++      + +  +k k++++  +++  e+HPSW Akk+a+ek+k+akf+GKKI+FD
  CCD23191.1 423 VAERQKRQEEYEERA----AKRAAKAEAYEkvmeEKRLRNRDngwaaRDSAVAKIKKTTPMLEKPPLEEHPSWVAKKLAEEKQKNAKFAGKKITFD 514
                 ***************....*********9977653333333389999899999999999999*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3714  (0.20715); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                       161  (0.00897987); expected 17.9 (0.001)
Passed Fwd filter:                        48  (0.00267723); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.22u 0.37s 00:00:01.59 Elapsed: 00:00:00.51
# Mc/sec: 3019.65
//
Query:       CCD23192.1  [L=545]
Description: hypothetical protein NDAI_0B01580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3994.66
//
Query:       CCD23193.1  [L=1332]
Description: hypothetical protein NDAI_0B01590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      5e-60  203.1   0.3    1.4e-59  201.6   0.3    1.8  1  CLU          Clustered mitochondria
    1.1e-35  123.3   7.1    1.1e-35  123.2   0.0    3.6  4  eIF3_p135    Translation initiation factor eIF3 subunit 135
    2.9e-19   69.2   1.9      1e-18   67.5   0.5    2.9  2  CLU_N        Mitochondrial function, CLU-N-term
    5.8e-07   29.5   0.3    2.5e-06   27.5   0.3    2.2  1  DUF727       Protein of unknown function (DUF727)
    0.00043   20.5   0.3      0.042   14.2   0.0    3.1  4  TPR_12       Tetratricopeptide repeat
     0.0059   16.4   0.0      0.016   15.1   0.0    1.8  1  TPR_10       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.025   14.4   1.3        4.2    7.3   0.2    2.8  2  Cas_APE2256  CRISPR-associated protein (Cas_APE2256)
      0.039   14.2   0.3       0.17   12.1   0.3    2.2  1  TPR_8        Tetratricopeptide repeat
        1.7    8.1   5.4       0.21   11.1   0.4    2.0  2  PEX11        Peroxisomal biogenesis factor 11 (PEX11)
        7.4    6.7  12.4         68    3.6   0.0    4.2  3  Fib_alpha    Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> CLU  Clustered mitochondria
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.6   0.3   7.6e-63   1.4e-59       2     221 .]     401     640 ..     400     640 .. 0.94

  Alignments for each domain:
  == domain 1  score: 201.6 bits;  conditional E-value: 7.6e-63
         CLU   2 WNeefqslrelpketlqerlereralsklasdFveaAtkgakaiikenilplnpkekpggqkylvnniffsfavDakgsyeslggdeaarkaagkdLkg 100
                 +N+++q++++lp +++ +r+e e++ +k+++dF+ aA+kga++i+ ++ +plnp+  +++++yl+++if+sfa D+ ++++ + ++e ar++a +dLk+
  CCD23193.1 401 FNDQYQAIKDLPLDSIPNRIEFEKLQTKITHDFTIAAIKGAMSIFTNDSIPLNPESVTNEHIYLIDDIFYSFA-DKVSNKDLIVDEETARVSATQDLKT 498
                 8************************************************************************.999999******************* PP

         CLU 101 lkllnrldvkglytlltaivDYrGkRliaqsllPgilk...........kekei........tivYGssdggktvhsdeefhellkk.vakalnlkehk 179
                 +++lnr+++++++++lt+ivD++GkRliaq+++Pg+l+           ++++i         ++YG ++++ ++  deef+  l   +ak+++l++h+
  CCD23193.1 499 INVLNRVKLDQVRYVLTTIVDFAGKRLIAQTPVPGLLSsmgaklekdpvTDETIlkdfkndvMVQYGLDEEEGKILYDEEFDAALGAeFAKIFHLQKHH 597
                 **************************************777766666553333388888899***********************877*********** PP

         CLU 180 .vkdeegkevklylsadikgivgsDgrkYllDlarlfPpdvnf 221
                  ++++++++ k+++s+ ++g++g+D+rkY+lDla+++P+d+nf
  CCD23193.1 598 aKVSADDDDNKIWFSSKSRGLIGFDKRKYVLDLANTYPIDINF 640
                 6556777999*******************************99 PP

>> eIF3_p135  Translation initiation factor eIF3 subunit 135
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.6       1.4   2.4e+03     100     138 ..      38      80 ..      13      99 .. 0.64
   2 ?   -4.1   0.7       7.9   1.4e+04      96     116 ..     194     211 ..     172     237 .. 0.44
   3 !  123.2   0.0   6.1e-39   1.1e-35       3     175 ..     736     977 ..     734     978 .. 0.94
   4 ?    0.4   1.6      0.33     6e+02      67     118 ..    1236    1288 ..    1214    1320 .. 0.40

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
   eIF3_p135 100 lkklykkkkkkknkkk....esewtkltpeslweqiekevkar 138
                 ++++++++k+kk++++    +++  + ++++l  q +k+vk r
  CCD23193.1  38 HHHNNNDTKGKKSNRNhkasSTTADNTKKNELLFQFNKDVKIR 80 
                 3333333333332222234356666777777777777777765 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 7.9
   eIF3_p135  96 idellkklykkkkkkknkkk...e 116
                 ++e +k++++   kkk   +    
  CCD23193.1 194 KEEGTKEEEP---KKK---NvfeV 211
                 1111111111...111...12221 PP

  == domain 3  score: 123.2 bits;  conditional E-value: 6.1e-39
   eIF3_p135   3 apiDGqsLtelLHkrGINvRYLGkva......................................................................... 28 
                 +p +G++L ++LHk+GIN+RYLGk++                                                                         
  CCD23193.1 736 IPYNGEHLVDTLHKHGINLRYLGKIIeitkeylesentkhsakleevakdnadyedweasylmkiekmiaerqakinkyvqegkevppeltgdlklned 834
                 799************************************************************************************************ PP

   eIF3_p135  29 ......kklekeeakarlealkrllvqEmiaRaaKhilrkylqsvealllsaavshflnClLgseenskpkvsidellkklykkkkkkknkkkesewtk 121
                       ++     ak++le+l ++++ E+i R++Kh lr++ + ++++l+++ +s ++n l+g++ n++p   + e ++++y+     k+     e+ +
  CCD23193.1 835 elrkptNEEPVIVAKDELETLIHVAEVEVISRSIKHFLRAFAKPLPVALVPSLISFVFNLLFGEQYNADP---KPEEVNEFYP----TKS----YEFVN 922
                 **988755555667889*************************************************9987...5566788999....344....49*** PP

   eIF3_p135 122 ltpeslweqiekevkarfryeleedsiee.elkkislLReiclkvGiqlllreYn 175
                 lt++s+ e i+ke+  rfryel+e++i++ + ++++l+R+ic k+Giql  +eY 
  CCD23193.1 923 LTRASILEFIQKEAFLRFRYELPENWINKhTGNPFQLIRSICYKFGIQLINKEYF 977
                 ****************************95667*********************6 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.33
   eIF3_p135   67 vealllsaavshf...lnClLgseensk.........pkvsidellkklykkkkkkknkkkese 118 
                  v+++++ + v+ +   ln +   ++n++         +          ++k++++ ++ +++++
  CCD23193.1 1236 VQTAQAKQWVTGLtnlLNNIQN-KINEEqkqvqeshqS----------KAKASSTGSSSSNNNS 1288
                  3444444444433000333332.222222222222220..........2222221111111111 PP

>> CLU_N  Mitochondrial function, CLU-N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.5   5.6e-22     1e-18       2      79 .]      76     150 ..      75     150 .. 0.96
   2 ?   -3.4   0.0       7.1   1.3e+04      37      73 ..    1205    1237 ..    1195    1239 .. 0.67

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 5.6e-22
       CLU_N   2 setvqdlrqvLselpstkylTnyhLkyengngerlnefvtlseiieeedvdelkLelkekpYterealeHvlrfReli 79 
                 + ++ ++ +vL++++++kylTn++L++   ng++l+e++tl+e +++++++ +kL++ +kpYt+r+ l+H+l++R+++
  CCD23193.1  76 DVKIRTVVDVLAISEQSKYLTNIQLTH---NGKILSEEATLGESLANNNDKVAKLNVSLKPYTTRSGLHHLLTVRDFV 150
                 679**********************88...78********************************************97 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.1
       CLU_N   37 nefvtlseiieeedvdelkLelkekpYterealeHvl 73  
                  n +vtl+e+   +     ++ + ek +t      Hv 
  CCD23193.1 1205 NMYVTLKEYRHGL----EHVVMAEKVFTKELGANHVQ 1237
                  5567888883222....36888888888888888876 PP

>> DUF727  Protein of unknown function (DUF727)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.3   1.4e-09   2.5e-06      26     104 ..     266     351 ..     261     352 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.4e-09
      DUF727  26 psteeviylnvetlEgeelcvelsakGfrvvsskydev........eeeeekedeekyfetlyaLLdkiSpeyrekFgekllekLek 104
                 +s+ ++ y++v tlE+e++ + ++ +Gf v  s+  +         ee ++++ ++ +f tly LL + S+++ ++  e+l +kL++
  CCD23193.1 266 KSKGHLFYIQVVTLESETFHITVTPSGFFVNKSSATKFdpnekifeEEDNKTQIKSGTFYTLYDLLAYHSKKFTSH-VEALEKKLSN 351
                 5678899*********************999888777788888886666677778888***************865.5677777776 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         4   7.1e+03      38      61 ..     739     760 ..     738     770 .. 0.75
   2 !   13.6   0.0   3.4e-05      0.06      20      76 ..    1042    1098 ..    1026    1099 .. 0.94
   3 !   14.2   0.0   2.3e-05     0.042       2      51 ..    1066    1115 ..    1065    1118 .. 0.94
   4 ?    1.9   0.0      0.16   2.8e+02       8      46 ..    1202    1240 ..    1169    1242 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4
      TPR_12  38 GpdhpltattlrnLgrlyralgry 61 
                 +++h  ++ tl+  g+ +r+lg+ 
  CCD23193.1 739 NGEH--LVDTLHKHGINLRYLGKI 760
                 5566..788888888888888874 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.4e-05
      TPR_12   20 deAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76  
                  + Al+ + +++++ +++    hp +a+ + +L+++y +lg   eA+++ +++ +i+e
  CCD23193.1 1042 TTALTSFAQSIAVLEEVNSVLHPTVAEKYLALSTIYNQLGLSSEAVAFCRKSCKIYE 1098
                  579*****************************************************8 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 2.3e-05
      TPR_12    2 vatalnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnL 51  
                  va  +  l +++++lg   eA ++++k+  i++r+ G d+ + +++++nL
  CCD23193.1 1066 VAEKYLALSTIYNQLGLSSEAVAFCRKSCKIYERVCGIDSFEMLRAMINL 1115
                  6777889******************************************9 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.16
      TPR_12    8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltat 46  
                  +l +++  l++y   le+   a  ++++ lG +h +ta+
  CCD23193.1 1202 RLSNMYVTLKEYRHGLEHVVMAEKVFTKELGANHVQTAQ 1240
                  566777777777777777777777777777777777776 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.9e-06     0.016       5      40 ..    1070    1105 ..    1066    1107 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.9e-06
      TPR_10    5 lnNLanalrqrgrydeAealleealairrrllGpdH 40  
                  +  L+ ++ q+g   eA+a+++++  i++r++G d+
  CCD23193.1 1070 YLALSTIYNQLGLSSEAVAFCRKSCKIYERVCGIDS 1105
                  66799****************************986 PP

>> Cas_APE2256  CRISPR-associated protein (Cas_APE2256)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.012        22      40     104 ..     762     831 ..     757     834 .. 0.74
   2 ?    7.3   0.2    0.0023       4.2      49      90 ..    1224    1265 ..    1205    1270 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.012
  Cas_APE2256  40 eilkeylee....egaevevveieklsdlgree.FreglrnLveklarevknkkregekvlinaTgGfKp 104
                  ei keyle+    + a++e v + +   +++e  +   +++++ + + +++++++eg++v   +Tg +K 
   CCD23193.1 762 EITKEYLESentkHSAKLEEVAKDNADYEDWEAsYLMKIEKMIAERQAKINKYVQEGKEVPPELTGDLKL 831
                  7889***99554434444444444455555444466699*********************9999999885 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0023
  Cas_APE2256   49 egaevevveieklsdlgreeFreglrnLveklarevknkkre 90  
                   e++ ++    +++++++ ++  +gl nL++++++++++++++
   CCD23193.1 1224 EKVFTKELGANHVQTAQAKQWVTGLTNLLNNIQNKINEEQKQ 1265
                   344444455678*******9*****************98776 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   9.7e-05      0.17       4      31 ..    1070    1097 ..    1067    1099 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.7e-05
                  HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8    4 yynlgsiylklgdyeeAkeyyekaleld 31  
                  y+ l+ iy +lg   eA+++++k +++ 
  CCD23193.1 1070 YLALSTIYNQLGLSSEAVAFCRKSCKIY 1097
                  899**********************996 PP

>> PEX11  Peroxisomal biogenesis factor 11 (PEX11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.6       1.9   3.3e+03     150     187 ..     190     226 ..     178     244 .. 0.59
   2 ?   11.1   0.4   0.00011      0.21     101     190 ..    1217    1314 ..    1174    1316 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.9
       PEX11 150 kekklkkek..kekeereeek...laavlkkrpallldlvknl 187
                 k ++++  +  ke+e+    k   + +v+ + ++++ ++v   
  CCD23193.1 190 KDQEKE--EgtKEEEP----KkknVFEVNDEEKSKFASMVHEI 226
                 222211..11122222....12346888888888777777654 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00011
       PEX11  101 lDhvlwlkklgllkvknakklsrlssrfwlfglvlslvrdlyelrllqekekklkkek..........kekeereeeklaavlkkrpallldlvknl 187 
                  l+hv++++k+ ++k+  a+ +++ +++ w+ gl+  l +  ++++  q++ ++ +++k          +++++++++  ++ ++ +p+l+ + v  l
  CCD23193.1 1217 LEHVVMAEKV-FTKELGANHVQTAQAKQWVTGLTNLLNNIQNKINEEQKQVQESHQSKakasstgsssSNNNSHSKK-NKKNNEPNPELAKKSVDEL 1311
                  5777777776.555566669************98777777789*******999999999999988764222222222.3455555666666666666 PP

       PEX11  188 lDl 190 
                  lD+
  CCD23193.1 1312 LDF 1314
                  665 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.038        68      23     126 ..     328     430 ..     325     433 .. 0.80
   2 ?    2.6   0.2     0.081   1.4e+02      53     117 ..     771     835 ..     751     840 .. 0.76
   3 ?    1.8   5.1      0.14   2.5e+02      33      84 ..    1241    1295 ..    1233    1316 .. 0.57

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.038
                 HHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH.HHCCHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  23 qdlllkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlket.idaqesnirvLqnvlesneqkiqk 120
                  dll  + k+++ ++e le++l+++++  + ++ l++ +++ +     +++     ++  s++l   i++ ++t  ++q + i+ L      n+ + +k
  CCD23193.1 328 YDLLAYHSKKFTSHVEALEKKLSNLESV-SYVKPLTTFLHKPWMVSSPTNPSDFLRLQLTSQDLS-PITKSNDTtFNDQYQAIKDLPLDSIPNRIEFEK 424
                 68899999***************99865.678899999999999999999876777888888899.666665550555669999999888889999999 PP

                 HHHHHH CS
   Fib_alpha 121 Leqdid 126
                 L+++i+
  CCD23193.1 425 LQTKIT 430
                 998886 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.081
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH CS
   Fib_alpha  53 eaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqk 117
                 e  +++ +++++ +++   ++ + +++ k++k++ e+++++++ +++  +   +L++ l+ ne +
  CCD23193.1 771 ENTKHSAKLEEVAKDNADYEDWEASYLMKIEKMIAERQAKINKYVQEGKEVPPELTGDLKLNEDE 835
                 444556677777777777777779999****************9999888777777777766666 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.14
                  CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS
   Fib_alpha   33 vkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn...dnvikkssk 84  
                   k+ ++ l+n l++i+n+ +e ++ v+e ++s +++ ++ + +   ++  kk +k
  CCD23193.1 1241 AKQWVTGLTNLLNNIQNKINEEQKQVQESHQSKAKASSTGSSSsnnNSHSKKNKK 1295
                  5566777777777777777777777777766666555443332111333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2515  (0.140276); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.11u 0.29s 00:00:01.40 Elapsed: 00:00:00.46
# Mc/sec: 8664.30
//
Query:       CCD23194.1  [L=436]
Description: hypothetical protein NDAI_0B01600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-29  102.1   8.8    6.9e-20   71.7   5.9    3.4  2  Opi1            Transcription factor Opi1
    0.00058   20.2  27.2      0.011   16.2   1.7    3.4  3  CENP-B_dimeris  Centromere protein B dimerisation domain
  ------ inclusion threshold ------
       0.26   11.8  39.7          1    9.8   4.8    3.6  3  Prothymosin     Prothymosin/parathymosin family
        2.2    7.6  36.8          2    7.7   5.3    3.3  3  NOA36           NOA36 protein
        5.5    6.5  10.8        1.5    8.3   4.5    2.8  2  DUF775          Protein of unknown function (DUF775)


Domain annotation for each model (and alignments):
>> Opi1  Transcription factor Opi1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   5.9   1.9e-23   6.9e-20     214     340 ..     189     356 ..      35     368 .. 0.78
   2 !   31.1   0.0   4.1e-11   1.5e-07     372     419 ..     355     402 ..     339     403 .. 0.79

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 1.9e-23
        Opi1 214 gaalseesmkrLkYCLhwLqyAtAHldaqilvLr........................................dfiaalqvipdrssar.rrqpisee 271
                    +s es+k+L  CLh+L++A+  l  ++  L+                                          +++ +  +d+++++   + +s++
  CCD23194.1 189 KLNMSIESKKSLIACLHLLKLANKQLSDKVSYLQdmvteeqvartthitnhnngnrhhirhpknitkksnddtsSATDSEDDEDDDDEEYfDANEPSKD 287
                 457899****************************************************************84443344444444444444246889999 PP

        Opi1 272 alrkltevkkdivstiRkvvdvvskYAGgaLPepArsrvRgfiLkLPsrWAsktaesgitpaaavApsr 340
                    + t +k +iv ti+kv   vskY G++LPepAr +vR+++L+LP+ W   + +s  ++ aa+ + +
  CCD23194.1 288 YDEQSTIIKMEIVGTIKKVYSLVSKYTGSSLPEPARTQVRETLLNLPTNWTISVNNSFFSTPAATSEQN 356
                 999***********************************************9888777776666665544 PP

  == domain 2  score: 31.1 bits;  conditional E-value: 4.1e-11
        Opi1 372 ssdeqlvshgaavvaaqriLslAtEsLDmlrnvtgvvkdsldrAdaWv 419
                 +++ +l s +    + +++L+lA EsLD++rnv+ vv+ sl rA+ +v
  CCD23194.1 355 QNQPTLNSSSNYISTNGKVLILAKESLDVVRNVIDVVDSSLGRAEEYV 402
                 223456788888999******************************988 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   6.5     0.095   3.4e+02      11      38 ..      80     102 ..      70     120 .. 0.47
   2 !   13.6   3.7   1.9e-05     0.066      18      38 ..     143     163 ..     130     210 .. 0.59
   3 !   16.2   1.7   2.9e-06     0.011       9      70 ..     258     325 ..     252     340 .. 0.67

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.095
  CENP-B_dimeris  11 dsesesdeeeeeeeedeededeeddedd 38 
                     d +se ++e+e+e+e+e     +++e++
      CCD23194.1  80 DPHSENENENEQEQEQE-----QEQEQE 102
                     22222222222222222.....222222 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.9e-05
  CENP-B_dimeris  18 eeeeeeeedeededeeddedd 38 
                      + e+++edeed+d+e d+++
      CCD23194.1 143 TDSENDNEDEEDDDDESDNEE 163
                     222333333333333333333 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 2.9e-06
  CENP-B_dimeris   9 gedsesesdeeeeeeeedeedede.....eddedddevpvpsfgeamayfamvkrylt.sfpiddrvq 70 
                      +d+ s +d e++e+++dee  d      + de++  + +  +g     +++v +y   s+p   r q
      CCD23194.1 258 NDDTSSATDSEDDEDDDDEEYFDAnepskDYDEQSTIIKMEIVGTIKKVYSLVSKYTGsSLPEPARTQ 325
                     57888889999999988888544310111334555556777888888999999999751466555554 PP

>> Prothymosin  Prothymosin/parathymosin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  11.1    0.0025       8.8      30      84 ..      56     103 ..      35     112 .. 0.40
   2 ?    6.7   8.0    0.0028        10      56      85 ..     136     165 ..     118     189 .. 0.64
   3 ?    9.8   4.8   0.00029         1      12      82 ..     210     277 ..     205     295 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0025
  Prothymosin  30 kdapangnaneengeeeadeeveeeeeeeeeeeeeeeeeeeegeeeegeeeeeea 84 
                   da+ n+n   +n    ++ + e ++++ + e  +e+e+e+e+e+e++  +e+e+
   CCD23194.1  56 VDAT-NNN--LDNRRISNEANIEISDKDPHSE--NENENEQEQEQEQE--QEQET 103
                  3343.333..3333333333333333222211..11112222222221..12222 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0028
  Prothymosin  56 eeeeeeeeeeeeeeeegeeeegeeeeeeae 85 
                  +  ee+ ++ e+++e++e++++e ++ee+ 
   CCD23194.1 136 DAYEENYTDSENDNEDEEDDDDESDNEEEY 165
                  444434355555555555555554555544 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00029
  Prothymosin  12 takdLKeKKevveeaekgk.dapangnaneengeeeadeeveeeeeeeeeeeeeeeeeeeegeeeegeeeee 82 
                   +k+L +K   +++  +++  a++    n++ng+ ++  + ++  ++ ++++   + + e++e+++   +ee
   CCD23194.1 210 ANKQLSDKVSYLQDMVTEEqVARTTHITNHNNGNRHHIRHPKNITKKSNDDT-SSATDSEDDEDDD---DEE 277
                  5677777744444443333122223333677888777766644444444332.2221111111111...111 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.6    0.0035        13     256     300 ..      60     104 ..      30     110 .. 0.53
   2 ?    6.9   9.0   0.00095       3.4     262     296 ..     126     164 ..     112     174 .. 0.53
   3 ?    7.7   5.3   0.00055         2     254     299 ..     244     289 ..     185     296 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0035
       NOA36 256 ydaylkalasgddeddegdedddddddeedddeeeddedeeeeee 300
                  ++  +   s++ + + +d+d + ++++e+++e+e+++++e+e e
  CCD23194.1  60 NNNLDNRRISNEANIEISDKDPHSENENENEQEQEQEQEQEQETE 104
                 223333333334444444444444444444444444444444333 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00095
       NOA36 262 alasg....ddeddegdedddddddeedddeeeddedee 296
                  ++s     dd ++e+++d ++d+++e+dd++e d++ee
  CCD23194.1 126 RVSSIarllDDAYEENYTDSENDNEDEEDDDDESDNEEE 164
                 333332334455555555555555554444444444443 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00055
       NOA36 254 sdydaylkalasgddeddegdedddddddeedddeeeddedeeeee 299
                  ++  + k+++ ++++d ++++d +dd+d++d+++ + +e +++ +
  CCD23194.1 244 RHHIRHPKNITKKSNDDTSSATDSEDDEDDDDEEYFDANEPSKDYD 289
                 3333333444444444555555555555555555444444433333 PP

>> DUF775  Protein of unknown function (DUF775)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.5   0.00043       1.5     110     170 ..      49     124 ..       1     140 [. 0.58
   2 ?    0.8   0.4     0.083     3e+02     112     169 ..     169     226 ..     126     243 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00043
      DUF775 110 siEpleqvaaqlaelkaeqsassssaassskseessaav...............tkelaqkiiknafnylaSFadk 170
                  iEp+++v+a+ ++l++++ +++++ + s k  +s++++               t++l  +++kn++ +   F +k
  CCD23194.1  49 IIEPTTEVDATNNNLDNRRISNEANIEISDKDPHSENENeneqeqeqeqeqeqeTETLLDRVCKNVVTFYDDFNSK 124
                 466666666666666555544443333222222222222334455556666667****************999883 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.083
      DUF775 112 EpleqvaaqlaelkaeqsassssaassskseessaavtkelaqkiiknafnylaSFad 169
                  +++++++ +a++k + ++ + + + +sk++  +  +  +la+k +++ + yl+  ++
  CCD23194.1 169 SKRQKISEAIAKSKDNLKEYKLNMSIESKKSLIACLHLLKLANKQLSDKVSYLQDMVT 226
                 3344444444444444443333333333333333333555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2781  (0.155112); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.93u 0.28s 00:00:01.21 Elapsed: 00:00:00.49
# Mc/sec: 2662.10
//
Query:       CCD23195.1  [L=672]
Description: hypothetical protein NDAI_0B01610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-68  231.3   3.1    1.6e-67  227.7   3.1    2.2  1  Adap_comp_sub  Adaptor complexes medium subunit family
  ------ inclusion threshold ------
        6.4    5.4   6.9         29    3.2   0.0    3.0  3  Presenilin     Presenilin
          8    6.5  23.4        3.5    7.7   1.5    3.2  3  YL1            YL1 nuclear protein


Domain annotation for each model (and alignments):
>> Adap_comp_sub  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.7   3.1   2.6e-71   1.6e-67       1     263 [.     295     671 ..     295     672 .] 0.80

  Alignments for each domain:
  == domain 1  score: 227.7 bits;  conditional E-value: 2.6e-71
                    XXXXXXXXXXXX-EEEEEEEEEEEEEE-T.TS-EEEEEEEEEEEEEE---TT-EEEEEE-SS-EE--S.SEESEEEEETT-B-TT..HHH...... CS
  Adap_comp_sub   1 iswrrkgikykkneiyldviErvsvlvdk.kGkilksevqGtiacksklsgmpelklgLndklnkekk.ielddvsfHqcVnldk..fes...... 86 
                    iswr+kgi+y+kne++ldviE+v++++d  kG i+k+ ++G+i ck++lsgmp+lk+++n++l+   + ++l++ +fHqcV+ld+   +s      
     CCD23195.1 295 ISWRTKGIHYAKNEFFLDVIEKVEYFMDFeKGLIRKNLIHGEIVCKCYLSGMPKLKISINKILQN--DsQFLSNAHFHQCVSLDSlhLQSaedddg 388
                    69*************************************************************99..77*************99964444899999 PP

                    .................H-EEEE---SEEEEEEEEEES--SS--S.......EEEEEEEEE-TTTSEEEEEEEEEE-S-TT-EEEEEEEEEE--TT CS
  Adap_comp_sub  87 .................ervisFiPpdgeftLmrYrlsannvklP.......fsvkpkvklsgdevrveielklkenfkkkltlenvkisiplpke 158
                                     +++i+FiPpdg+f L++Y+l +++vk+        f +kpk+++     +++i++ +++ fk ++++++++++ip+ + 
     CCD23195.1 389 ddnanvnenenhderdrKKEIEFIPPDGDFLLCKYEL-KRHVKDLpviklklFDIKPKLSK----YKLKIHVIIETHFKTTNNTSKLNLKIPIERL 479
                    99999999999999*99********************.99998876888888888888776....9************99*************998 PP

                    ........-EEEEEEESSTT-EEEEETTEEEEEE--..............................EETT-EE....................... CS
  Adap_comp_sub 159 ........vsnlaiktskGkakynpeenaleWtikk..............................lpggnes....................... 193
                            ++++++k+ +Gk+ +n ++n+l+W+i++                              +                             
     CCD23195.1 480 fqeyridlSKQIKFKCDQGKVLFNLSDNFLIWEIGSmkgghgevtmsmmaefpifneeeyerlqeeM-----Ktsmnppplregpkleelykkihh 570
                    ************************************4444444444444444444444444433330.....034444444444444444444444 PP

                    .....EEEEEEE--------------.................................................EEEEEEEET--SS---EEEEE CS
  Adap_comp_sub 194 ...slsgeleleaesekkeenprdgkl................................................vsveFkipgftaSgikVeslk 238
                                                                                               ++++F+ip++t+Sg+k+e+lk
     CCD23195.1 571 hndE----------------------DedeveaeveaeeeeedvgsqeatgtharktkeerkdkdlrkrtrspnlLKIDFEIPYYTCSGLKIEYLK 644
                    4441......................0333333333333333333333355666666666666677777888899********************* PP

                    EE--.-----EEEEEEEEEEE.EEEE- CS
  Adap_comp_sub 239 veer.esykpfkwvryvtvsg.eyeir 263
                    +ee+  +y++f+wvry+t s+ ey++ 
     CCD23195.1 645 IEEPqLQYQSFPWVRYKTISDeEYAYI 671
                    *********************999986 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0    0.0049        29      63      98 ..      84     122 ..      59     147 .. 0.80
   2 ?    1.1   0.1     0.022   1.3e+02     237     257 ..     187     207 ..     154     272 .. 0.55
   3 ?    2.8   0.8    0.0068        41     257     309 ..     560     612 ..     516     640 .. 0.46

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0049
  Presenilin  63 nalililvi...vvvtfllvlLykyrcykvikgwlilss 98 
                 ++li++++i    + ++++++ y  ++yk++k +l ++ 
  CCD23195.1  84 DSLIFVSIIennSMNSLMIIFSYLEEFYKLLKSYLNVTK 122
                 6788888883322445667777999**********9875 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.022
  Presenilin 237 eeeeaekkkeeasesskeees 257
                 ++++++k+k++++++++++++
  CCD23195.1 187 DDDNKHKRKHKHKHKHEKSKA 207
                 111111111111111111111 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.0068
  Presenilin 257 seeesseksaqsseseeeseeesseaessaeesseekeseessesseeeeeee 309
                 + ee  +k++++++++e++ e++ eae+++e   +++++ ++ ++++ee++++
  CCD23195.1 560 KLEELYKKIHHHNDEDEDEVEAEVEAEEEEEDVGSQEATGTHARKTKEERKDK 612
                 33333333333322222222222222222222222222222221222222221 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   1.5   0.00059       3.5      56      90 ..     177     211 ..     144     252 .. 0.69
   2 ?    4.1   0.3    0.0074        44      48      82 ..     374     408 ..     351     434 .. 0.70
   3 ?    3.6   8.8      0.01        61      47      94 ..     549     615 ..     533     628 .. 0.40

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00059
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  56 deedeesdeeedeeegekelerqerkkrkkekkkr 90 
                 d +de s++++d+++  ++ + ++++++ k+k k+
  CCD23195.1 177 DGNDEVSSDDDDDNKHKRKHKHKHKHEKSKAKGKQ 211
                 45556666666666665555555555553222222 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0074
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  48 nsDsdfdsdeedeesdeeedeeegekelerqerkk 82 
                 + Ds   ++ ed+++d++++ +e+e+  er ++k+
  CCD23195.1 374 SLDSLHLQSAEDDDGDDNANVNENENHDERDRKKE 408
                 45665556666777788888888888655555554 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.01
                 x.....................xxxxxxxxxxxxxx...xxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxx RF
         YL1  47 e.....................nsDsdfdsdeedee...sdeeedeeegekele....rqerkkrkkekkkrkaqk 94 
                 +                       D+d d+     e   ++eee+e+ g +e      r+ +++r     k k+ +
  CCD23195.1 549 SmnppplregpkleelykkihhHNDEDEDEV----EaevEAEEEEEDVGSQEATgthaRKTKEER-----KDKDLR 615
                 3555555555555555544333223222222....122334444444444443332223333333.....221111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1655  (0.0923086); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 4344.60
//
Query:       CCD23196.1  [L=130]
Description: hypothetical protein NDAI_0B01620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-22   77.8   0.0    6.9e-22   77.4   0.0    1.1  1  Pterin_4a  Pterin 4 alpha carbinolamine dehydratase


Domain annotation for each model (and alignments):
>> Pterin_4a  Pterin 4 alpha carbinolamine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   3.8e-26   6.9e-22       6      90 ..      16     115 ..      12     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 3.8e-26
   Pterin_4a   6 eeiqkllael...pgWr.....le.......eaeelere.fkfkdfeeaiafvnrvaalaeeenHhpdilvsynkvtvrltThdaggltenDfklAaki 88 
                 ++++++l++l   p+W+     ++         ++l re +kfk+fe ++af+n++a+ ++ ++Hhp+i+++ynkv+++l  hd++ +t+ D+klA+ki
  CCD23196.1  16 KNLSSKLSDLklsPNWKtipplESkdsnikiG-HKLVREtIKFKNFEITWAFLNQLAMRCHLWGHHPTISTTYNKVDLQLFNHDLNMITDIDLKLASKI 113
                 56666674333479***877762266789954.45655549********************************************************** PP

   Pterin_4a  89 de 90 
                 ++
  CCD23196.1 114 ES 115
                 97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 940.63
//
Query:       CCD23197.1  [L=267]
Description: hypothetical protein NDAI_0B01630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-25   88.4   0.0    4.6e-25   87.6   0.0    1.4  1  NifU      NifU-like domain
    2.7e-19   69.0   0.1    9.8e-19   67.2   0.0    2.0  2  Nfu_N     Scaffold protein Nfu/NifU N terminal
     0.0051   16.9   0.2      0.011   15.9   0.2    1.5  1  YojJ      Bacterial membrane-spanning protein N-terminus


Domain annotation for each model (and alignments):
>> NifU  NifU-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   7.6e-29   4.6e-25       1      67 []     166     234 ..     166     234 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 7.6e-29
                 HHHHHHH.HGGG--GG--EEEEEEEETT..EEEEEEESGGGG-....THHHHHHHHHHHHH-TT--EEE CS
        NifU   1 ieevleeeirPaLasdGGdielvdvdeg..vVkvrlqGaCsgCpsstvtlkegiekaLkeevpevkeVe 67 
                 i+e+++++irPa+ +dGGd+++++ d++  +V++rl+G+Cs+C+ss+vtlk+gie++L+++v+evkeV+
  CCD23197.1 166 IDELIDTRIRPAILEDGGDVDYLGWDSKtgTVYLRLKGSCSSCSSSEVTLKYGIESMLMHYVDEVKEVI 234
                 789********************9999888*************************************95 PP

>> Nfu_N  Scaffold protein Nfu/NifU N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   1.6e-22   9.8e-19       1      87 []      31     124 ..      31     124 .. 0.92
   2 ?   -1.6   0.1       0.5     3e+03      56      64 ..     130     138 ..     127     172 .. 0.46

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 1.6e-22
       Nfu_N   1 iqteeTPNpnalkFlp.gkellpe..gstaefksaeea...asplakkLfki.egVksVfigsdFitvtkeddvdWeelkpevlevikeflesg 87 
                 i++ +TPN++alkFl+ + el+++  ++++ +k+++++   + +la+++f    g +s++ig+dF++v+k++++dW++l+p+v++++ e+l+sg
  CCD23197.1  31 INVLTTPNEHALKFLSvDGELFQTpgSKSIVIKNTDTTlinNCKLAERIFLEcSGAESLMIGDDFVSVNKDSMIDWNQLRPDVVRILLEHLKSG 124
                 67889*********999*****9987777888888865678*********7779*************************************986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.5
       Nfu_N  56 sdFitvtke 64 
                 +dF tv+  
  CCD23197.1 130 DDFFTVKEL 138
                 556665543 PP

>> YojJ  Bacterial membrane-spanning protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   1.8e-06     0.011       6      51 ..     211     256 ..     206     262 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.8e-06
        YojJ   6 leeelkeklkeeLeqiekeleevlkaldeedeClLcelesirekfa 51 
                 +e  lk  +  +L++   e++ev++ ld ++e  L e++++ +k++
  CCD23197.1 211 SEVTLKYGIESMLMHYVDEVKEVIQLLDPQQEIALKEFDKLEKKLS 256
                 56689*************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       813  (0.0453455); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1893.83
//
Query:       CCD23198.1  [L=740]
Description: hypothetical protein NDAI_0B01640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-18   65.2  31.1    9.8e-18   64.2  31.1    1.5  1  SSF       Sodium:solute symporter family
    0.00018   20.4   0.3    0.00018   20.4   0.3    4.6  3  DUF2207   Predicted membrane protein (DUF2207)
  ------ inclusion threshold ------
       0.21    9.8   1.2        0.3    9.3   1.2    1.1  1  COG6      Conserved oligomeric complex COG6
       0.26   11.3   0.3       0.49   10.5   0.3    1.4  1  RP-C_C    Replication protein C C-terminal region


Domain annotation for each model (and alignments):
>> SSF  Sodium:solute symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2  31.1   2.2e-21   9.8e-18       1     406 []      48     465 ..      48     465 .. 0.77

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 2.2e-21
         SSF   1 yflagrsltgfvlglslaasnisaasfvGlaGavaasGl.avvllelgalllvllllll.laerlrnagalTlpdylskRfkgkr.ilvylsalslllv 96 
                 + +agrs+    +++++ +s i  + ++      ++ G+ ++  ++ ga + ++   ++ +  +    +a T  +++++R+++   i  ++ al++ ++
  CCD23198.1  48 FSTAGRSVKTGLVAAAVVSSWIWCSTLLTSVSKQYTGGMfGGYSYSAGACFQIIAFAIIaIKTKQKAPNAHTYLEIVRARYGKYGhICFLFYALATNIL 146
                 568***********************************625566788877765444333033444488*************997657777777777666 PP

         SSF  97 itlklsvdlvggaklielalGlnyetavlllaaltalYtviGGllAvvytdtiqavlmlvgalilliivlle...vGgleslveklkeaapkv.vdllt 191
                 +t+ l   l +g + +  + G++ ++a +ll + +++Yt++GG+ A+ +td + ++++++  +i ++ v+     +G+  ++ + + eaa +  v  + 
  CCD23198.1 147 VTAML---LTSGSAVFSDITGMSATAACFLLPVGVIIYTLFGGIKATFLTDYLHTIVIIIIVMIFAFKVFATgdvLGSPGKVYDLVREAAKRHpVAGNA 242
                 66555...789************************************************9988888888765333455445544444554444344455 PP

         SSF 192 pdslkllrdpltalslwlglv..lGvagl.philvRflaakdakailkgvlkltivlilvligmisiilfaiklagavp......kavgtevgvsniay 281
                 ++ + ++ + ++++ l + lv  +G++ l      + ++a+ a+++   v+ ++ ++++  +  +++++   ++    p      +   +++ ++ +++
  CCD23198.1 243 GGEYMTMSSRTSGIFLVINLVgnFGTVFLdNGYWNKAISASPAASMPGYVMGGLSWFSIPCLVSLTMGFACLAVETL-PnfptypDPLSSSQVTAGLVL 340
                 5566666666776666555544488888866678899999999998888889999**99888888888876555433.334466699999999999*** PP

         SSF 282 peLvvkllpnllaGlllavmlAaimstltslllsassaftkDlYkk.irrkasakekelvgvsriivlvvislaillavqeeqkgvlklvelafaglas 379
                 p  ++ +l+++ a   l +++ ai s +++ l++ ss+ft D+Y   i +ka+ k++ l+  ++ i+  v++ a+++ +++     + +   +++++ s
  CCD23198.1 341 PAAAITVLGKGGAVATLLMVFMAITSAMSAELIAVSSVFTYDIYRIyINPKATGKQLILSSHGACIFFGVAMSAFAVGLNAGGV-SVGYLYEIMGIIIS 438
                 ********998777777777889*********************8626677777777777777888777777777777777666.45666666666665 PP

         SSF 380 avlavillalfwkrvneqGAlagliiG 406
                   +  ++l+l wk+ n + A+++ i+G
  CCD23198.1 439 SAVLPVILTLCWKQQNIHAAIISPILG 465
                 55556678*************999988 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -20.8  24.5         4   1.8e+04     408     412 ..     170     195 ..      11     369 .. 0.78
   2 ?   -5.7   7.7       3.4   1.5e+04     378     409 ..     392     450 ..     361     517 .. 0.63
   3 !   20.4   0.3     4e-08   0.00018     322     429 ..     550     670 ..     521     682 .. 0.69

  Alignments for each domain:
  == domain 1  score: -20.8 bits;  conditional E-value: 4
     DUF2207 408 l.....................lvfl 412
                 +                     l+ +
  CCD23198.1 170 AcfllpvgviiytlfggikatfLTDY 195
                 02222222222222233333322222 PP

  == domain 2  score: -5.7 bits;  conditional E-value: 3.4
     DUF2207 378 kklkklsalglgliilglilillallllvll...........................l 409
                 +  k l++ + g++i++ +++ +++++l+++                           +
  CCD23198.1 392 ATGKQLILSSHGACIFFGVAMSAFAVGLNAGgvsvgylyeimgiiissavlpviltlcW 450
                 44445555555555555555555555555555555555554444444444444444440 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 4e-08
     DUF2207 322 lldlLfdkseegks....lkeikkyakkskk....kakkfkkalkkwksavkk....kergyfdkkgkkklkklsalglgliilglilillallllvll 408
                 +++ +        s    +k++k +++++ +    +++k+++  + + s +++    ++++ +++++++ +k l ++++++i+++l+++++  + ++++
  CCD23198.1 550 VVQDIE-------SvsssSKSLKNDVTNDADytnnNNDKIQAVRTIMSSILEDvnptVAQRELEEEKQELAKGLKIAYFLCIFFALAFLVVWPMPMYGT 641
                 333333.......23334677777777777755555555555555555555558889999999999888888888888888777777766655555555 PP

     DUF2207 409 ........lvfllilllillliaiivlll 429
                         +++++++++i+++i+++++++
  CCD23198.1 642 hyifskrfFTGWVVVMIIWIFISAFCVCV 670
                 ******99999999999999998887765 PP

>> COG6  Conserved oligomeric complex COG6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.2   6.6e-05       0.3      23     107 ..     538     622 ..     529     623 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 6.6e-05
        COG6  23 diekellkineefleefqpvaeqLkriesdveklnelcdemkkklssakeetsdlleeaeeLkeekkklelkqkllkaflkkFtL 107
                 +i k+l +i + ++++ + v  + k++++dv++ ++  ++ ++k+++ ++  s++le+++   ++++  e+kq+l+k ++  + L
  CCD23198.1 538 EIAKDLEDIDGIVVQDIESVSSSSKSLKNDVTNDADYTNNNNDKIQAVRTIMSSILEDVNPTVAQRELEEEKQELAKGLKIAYFL 622
                 788999999*******************************************************************999877765 PP

>> RP-C_C  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   0.00011      0.49      17      74 ..     528     593 ..     524     622 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
      RP-C_C  17 prkatlaeleelleelealreevenalesalkaenssanesqnerhiqnsnpdssse........s 74 
                 +  + ++e ee++++le +   v + +es +++++s +n+ +n+++++n n+d+++         +
  CCD23198.1 528 KTISRVDETEEIAKDLEDIDGIVVQDIESVSSSSKSLKNDVTNDADYTNNNNDKIQAvrtimssiL 593
                 455678999999****************************************87776333333221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1298  (0.0723967); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 4953.85
//
Query:       CCD23199.1  [L=151]
Description: hypothetical protein NDAI_0B01650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-24   85.2   1.6    5.7e-24   84.2   0.7    1.8  2  Ribosomal_S10  Ribosomal protein S10p/S20e
  ------ inclusion threshold ------
      0.019   14.9   0.4      0.026   14.5   0.4    1.3  1  GerD           Spore germination GerD central core domain


Domain annotation for each model (and alignments):
>> Ribosomal_S10  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.16   1.4e+03      64      79 ..      27      42 ..      15      50 .. 0.84
   2 !   84.2   0.7   6.4e-28   5.7e-24       1      97 [.      53     146 ..      53     147 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.16
                   EEEEEEEE.E-HHHHH CS
  Ribosomal_S10 64 hkRlidisdatketid 79
                    kR i +sd +ke ++
     CCD23199.1 27 IKRYITMSDFQKEKVE 42
                   5899999999998876 PP

  == domain 2  score: 84.2 bits;  conditional E-value: 6.4e-28
                    EEEEEESSHHHHHHHHHHHHHHTTSSS-EE---EEEEEEEEEEEEE--SS--.S--EEEEEEEEEEEEEEEE.E-HHHHHHHS-...S---SS-EE CS
  Ribosomal_S10   1 rirlkSydsklLekavkkivraakelgikvkgpvplPtkrkrvtvlksphvd.kksreqfeirthkRlidisdatketidtllkllqlnlpegVsv 95 
                    ri+l+S++ k+Le+++++iv  a+++++  kgpv+lPtk++++ ++k+p ++ +k++e +e+r+hkR id++ a+ + ++++++   +++++gV+v
     CCD23199.1  53 RITLTSTKVKQLENVSNNIVLNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEgSKTWETYEMRIHKRYIDLE-APVNIVKRITQ---ITIEPGVDV 144
                    8**********************************************************************5.77778888888...********* PP

                    EE CS
  Ribosomal_S10  96 ev 97 
                    ev
     CCD23199.1 145 EV 146
                    98 PP

>> GerD  Spore germination GerD central core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.4   2.9e-06     0.026      27      83 ..       4      60 ..       1      83 [. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.9e-06
        GerD 27 klfkdpkfaealaksmkkenekllkdLmkDpeYqkmlleilkdpemekqllellksk 83
                k+f+ p+ a +  k++ ken++l+k+ ++ +++qk+ +e  + p++ k  ++l  +k
  CCD23199.1  4 KTFNLPRLARNSCKTIGKENQELIKRYITMSDFQKEKVEEQEAPQIIKIRITLTSTK 60
                78999*******************************999999999888766655443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       967  (0.053935); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1201.48
//
Query:       CCD23200.1  [L=412]
Description: hypothetical protein NDAI_0B01660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-28   98.3   0.2    8.3e-28   96.4   0.0    2.2  2  YchF-GTPase_C  Protein of unknown function (DUF933)
      5e-17   62.0   0.2    2.5e-16   59.8   0.0    2.1  2  MMR_HSR1       50S ribosome-binding GTPase
    6.6e-05   22.9   0.0    0.00018   21.5   0.0    1.7  1  TGS            TGS domain
    0.00078   19.0   0.0     0.0016   18.0   0.0    1.5  1  FeoB_N         Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.027   13.9   0.0         10    5.5   0.0    2.8  3  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,


Domain annotation for each model (and alignments):
>> YchF-GTPase_C  Protein of unknown function (DUF933)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.3   8.2e+03      53      75 ..     185     207 ..     159     212 .. 0.47
   2 !   96.4   0.0   2.3e-31   8.3e-28       1      83 [.     321     406 ..     321     407 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.3
  YchF-GTPase_C  53 gseaaakeagklrlegkdyvvqd 75 
                    g e+++ + +k+ +   d + ++
     CCD23200.1 185 GLEQHLYSGKKIIHYKDDWTKEE 207
                    22444444455555555555555 PP

  == domain 2  score: 96.4 bits;  conditional E-value: 2.3e-31
  YchF-GTPase_C   1 LitffTaGekevraWtikkgttapqaAgviHsDfekgFiraevikyedlvel...gseaaakeagklrlegkdyvvqdgDiilfkf 83 
                    Li+ffT+G+ evr+W+++kg+ta++aAg+iH+D+e +Fi+a++i+y dl  +    +e+ +k++  +++ gk+y++qd+Di lfk+
     CCD23200.1 321 LISFFTCGPLEVREWNLRKGSTAKEAAGIIHTDLEDTFINADIIHYLDLLGTkmpYNESYLKSKSFIHRVGKQYIIQDNDIALFKA 406
                    89***********************************************98855455999************************95 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   6.9e-20   2.5e-16       3      97 ..      19     133 ..      17     156 .. 0.80
   2 ?   -1.3   0.0      0.61   2.2e+03      72     113 ..     188     227 ..     164     228 .. 0.58

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 6.9e-20
                 EEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE.................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke.................ielvDtpGliegaseekglgkaflalee.adlillv 82 
                 +ivG  N GKSt+++a+t++  +  +++p++T++++e  +++ +++                 ++++D++Gli gas+++glg++fl+ ++ +d i+++
  CCD23200.1  19 GIVGLANIGKSTFFQAITNSkLSNPANYPFATINPEECLIQIPNDKltqlqqiynssktikstLTVTDIAGLIRGASQGNGLGNKFLNDIRfVDGIFHL 117
                 89*****************956899*************9995543345566666666677777*************************99988****** PP

                 EETT.TTCSHHHHHHH CS
    MMR_HSR1  83 vdas.eeklkpldeel 97 
                 v+   +++++++++++
  CCD23200.1 118 VRGFiKDDVEHVERTI 133
                 *844533344444433 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.61
                 HHHCT.SEEEEEEETTTTCSHHHHHHHHHHHHH.TTSEEEEEEE CS
    MMR_HSR1  72 aleea.dlillvvdaseeklkpldeeleellee.akkplilvln 113
                 ++  + + i++  d   + +++++ ++ +  +  + kp+i++ln
  CCD23200.1 188 QHLYSgKKIIHYKD---D-WTKEEVDIINKHHFlTAKPTIILLN 227
                 44443345555555...2.5555555555532256677777776 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   4.9e-08   0.00018      12      55 ..     336     401 ..     324     403 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 4.9e-08
                 EEETTB-HHHHHHHHSTTHHHHEEEEEECS......................EEEETTSBB-SSEE CS
         TGS  12 dlprgatveDfAykIhrslakkfiyAlVnG......................qrvgldhvLedgdv 55 
                 +l++g+t++++A  Ih++l ++fi A +                         rvg  + ++d+d+
  CCD23200.1 336 NLRKGSTAKEAAGIIHTDLEDTFINADIIHyldllgtkmpynesylksksfiHRVGKQYIIQDNDI 401
                 39*************************999999999999999999999999999999999999996 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.5e-07    0.0016       5      48 ..      20      64 ..      16      83 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.5e-07
                EEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEE CS
      FeoB_N  5 lvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgke 48
                +vG  n+Gk+t+f a+t++k ++ +N+p  t++ +e+ +++ +++
  CCD23200.1 20 IVGLANIGKSTFFQAITNSKlSNPANYPFATINPEECLIQIPNDK 64
                89*****************94568**********99999865544 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0039        14      28      51 ..       7      30 ..       3      86 .. 0.85
   2 ?    5.5   0.0    0.0028        10      95     127 ..     197     229 ..     163     232 .. 0.84
   3 ?   -1.8   0.0      0.47   1.7e+03      67      96 ..     337     365 ..     328     372 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0039
                  CGSBS-GTTSEEEEES-SHHHHHH CS
  2-Hacid_dh_C 28 allgkelsgktvGiiGlGrIGqav 51
                  ++lg+  ++ t Gi+Gl +IG+++
    CCD23200.1  7 HILGRPSNNLTSGIVGLANIGKST 30
                  6778888999***********986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0028
                   EEE-S--STTTTTSBSHHHHHCSTTTEEEEESS CS
  2-Hacid_dh_C  95 vslhlpltpetrhlinaeelakmkkgailiNta 127
                   +      t+e  ++in++++   k++ il+Nt+
    CCD23200.1 197 IHYKDDWTKEEVDIINKHHFLTAKPTIILLNTS 229
                   555556799999*******************97 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.47
                   SSHHHHHCHHHHTCEECSHHHHHHH-SEEE CS
  2-Hacid_dh_C  67 rskkkeeeeeelgvelvsleellaesDivs 96 
                    +k +++ +e+ g+ +++le+ + ++Di+ 
    CCD23200.1 337 LRKGSTA-KEAAGIIHTDLEDTFINADIIH 365
                   4544444.5667888999*********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3256.81
//
Query:       CCD23201.1  [L=307]
Description: hypothetical protein NDAI_0B01670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-27   96.6   0.1    1.5e-27   96.6   0.1    2.0  3  OTU            OTU-like cysteine protease
    0.00029   20.4   4.5    0.00074   19.0   0.0    2.8  3  Peptidase_C65  Peptidase C65 Otubain
  ------ inclusion threshold ------
      0.029   14.8   5.6      0.029   14.8   5.6    2.5  2  Cep57_MT_bd    Centrosome microtubule-binding domain of Cep57
        7.4    6.8  12.7        4.3    7.6   5.9    2.8  2  cwf21          cwf21 domain


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3      0.89     4e+03      21      44 ..      25      52 ..       4      77 .. 0.48
   2 ?   -3.3   0.1       2.7   1.2e+04      23      39 ..     113     129 ..     104     154 .. 0.60
   3 !   96.6   0.1   3.2e-31   1.5e-27       1     127 []     167     301 ..     167     301 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.89
                HCCHHHHHHHHHCH...HHHHH.TSSHH CS
         OTU 21 elrkakvseLrekl...aeylr.ehsee 44
                + +k++++++ +k+   +e+l+ +hs+e
  CCD23201.1 25 QATKSQRKQVNSKCielQESLElKHSNE 52
                3333333333333322222222333333 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.7
                 CHHHHHHHHHCHHHHHH CS
         OTU  23 rkakvseLreklaeylr 39 
                 r+ ++++L +++ae  r
  CCD23201.1 113 RNRQKEKLAKRDAEIAR 129
                 44556677777665544 PP

  == domain 3  score: 96.6 bits;  conditional E-value: 3.2e-31
                 --SS-HHHHHHHHCCCSS.S.........HCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH.......HHHHTTSTTHHHHHHHHHHHHHHCTS-E CS
         OTU   1 rgDGnCLlravsqqlwgvsd.........elrkakvseLreklaeylrehseelelfleeeeeg.......ylkeiektaawggeleifalahiLrrpI 83 
                 ++DG+CL++++ +ql  +++         + ++ +v +Lr+  ++y+re+++++ ++l +e ++       y+ke+e ta+wgge+ei al++++++pI
  CCD23201.1 167 QPDGHCLFASILDQLQIRHKknitekdnpKYKDLDVYKLRKLACDYIRENKNDFIPYLFDESTMslkdideYTKEMETTAKWGGEIEILALSKVFDCPI 265
                 59*****************988776655444455555************************999*********************************** PP

                 EEETTSSSSEEEE-TT-EEE--TTS-GGGS-SS-EEEEEETTEE CS
         OTU  84 iVlksesgeelvglkfegvylplekdkslclkypihlyylgeHy 127
                  +l+s ++ ++v+  ++g       +++l l+y++h y+lgeHy
  CCD23201.1 266 SILMSGRATHKVN--EQG------TNPELKLVYYKHTYALGEHY 301
                 **88877776666..666......89*****************9 PP

>> Peptidase_C65  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.4      0.29   1.3e+03      72      88 ..      48      64 ..       1     111 [. 0.49
   2 ?    2.1   0.0     0.025   1.1e+02      44      57 ..     165     178 ..     112     192 .. 0.67
   3 !   19.0   0.0   1.6e-07   0.00074     131     202 ..     194     269 ..     179     295 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.29
                   HHHHHHHHHHHHHHHHH CS
  Peptidase_C65 72 evsrikerveklkeale 88
                   ++s+++++ +++++ ++
     CCD23201.1 48 KHSNEIKEWKSQNNMID 64
                   22222222222222222 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.025
                    -B--SSTHHHHHHH CS
  Peptidase_C65  44 rvrgDGnCfyRafl 57 
                     ++ DG+C++ ++l
     CCD23201.1 165 DIQPDGHCLFASIL 178
                    4789******9986 PP

  == domain 3  score: 19.0 bits;  conditional E-value: 1.6e-07
                    SHHHHHHHHHHHHHHHHHHHHHTHHHHGGGS-TT.....--HHHHHHHHTSSTT--B-HHHHHHHHHHTT--EEEEE CS
  Peptidase_C65 131 eqeesdyivvflRlltsaelkthadeyepFldel.....stveeFceqevepvnkEaDnvqitaLaealgvkvrVey 202
                    +++  d  v+ lR l+  +++++++++ p+l+++     ++++e+ ++  e ++k   +++i aL+++++ ++ +  
     CCD23201.1 194 NPKYKDLDVYKLRKLACDYIRENKNDFIPYLFDEstmslKDIDEYTKEM-ETTAKWGGEIEILALSKVFDCPISILM 269
                    44444557999*********************9999999999***8766.***********************9974 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   5.6   6.6e-06     0.029      24      68 ..       5      49 ..       1      57 [. 0.91
   2 ?   -2.3   0.2       1.4   6.3e+03      41      41 ..     123     123 ..      99     157 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.6e-06
  Cep57_MT_bd 24 fehlklelqelaaqynaldpslgkrkRkdLaeeleelvkrlEaKa 68
                 ++ +++e ++l+ q+  + + ++k++Rk++++++ el+++lE K 
   CCD23201.1  5 LSRHRKEKKDLQNQITGMKKQATKSQRKQVNSKCIELQESLELKH 49
                 678999************************************995 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
  Cep57_MT_bd  41 l 41 
                   
   CCD23201.1 123 R 123
                  1 PP

>> cwf21  cwf21 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   5.9   0.00095       4.3       5      25 ..      30      70 ..      28      93 .. 0.72
   2 ?    2.4   0.5     0.041   1.8e+02       6      32 ..     122     149 ..     117     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00095
       cwf21  5 rrReIEvkvlelrdeLEeeg....................l 25
                +r ++ +k++el++ LE +                      
  CCD23201.1 30 QRKQVNSKCIELQESLELKHsneikewksqnnmideidkvE 70
                799*************9864345555555555555555552 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.041
       cwf21   6 rReIEvkvlelrdeLEeegl.seeeIee 32 
                 +R  E   ++++ +LE +++ + + Ie+
  CCD23201.1 122 KRDAEIARMKEEARLEASKQpDLKKIEQ 149
                 78889999*********98766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2400  (0.133861); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 2424.43
//
Query:       CCD23202.1  [L=924]
Description: hypothetical protein NDAI_0B01680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-07   29.9   8.6      9e-07   28.9   8.6    1.6  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   8.6     5e-11     9e-07       1      39 [.      49      89 ..      49      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 5e-11
                SS-HHHHHCT---STSSSS..-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  1 haCdnCrkkKvKCdakkPa..CsnCkklnleCtfysesskr 39
                +aCd+C+k++++C+++k +  C+ Ck+ + +C f + + kr
  CCD23202.1 49 RACDQCHKRRIRCNYNKVTnmCAGCKRIGEHCLFTRIPLKR 89
                69*************666667************88887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4107  (0.22907); expected 358.6 (0.02)
Passed bias filter:                      695  (0.038764); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.22u 0.31s 00:00:01.53 Elapsed: 00:00:00.49
# Mc/sec: 5622.49
//
Query:       CCD23203.1  [L=499]
Description: hypothetical protein NDAI_0B01690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-185  616.9   0.0     2e-185  616.3   0.0    1.2  1  UDPGP     UTP--glucose-1-phosphate uridylyltransferase


Domain annotation for each model (and alignments):
>> UDPGP  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  616.3   0.0  1.1e-189    2e-185       2     413 .]      53     464 ..      52     464 .. 0.98

  Alignments for each domain:
  == domain 1  score: 616.3 bits;  conditional E-value: 1.1e-189
       UDPGP   2 esFkklferyleekskqekidwdkieplpeeevvdyedlkekeeekkellnklavlkLnGglGtsmGckgpKslieVrdgktfLdlivqqieelnkkyn 100
                 +sF++lf+ryl eks+ ++++w+ki++++++evvdy+ + +++ e+ + l+klavlkLnGglGtsmGc+gpKs+ieVrdg+tfLdl+v+qie+ln++y+
  CCD23203.1  53 DSFFSLFRRYLVEKSSGSTLEWEKIKSPNPNEVVDYNVI-SQQPENVTNLSKLAVLKLNGGLGTSMGCVGPKSVIEVRDGNTFLDLSVRQIEHLNRQYD 150
                 79*************************************.778889999************************************************** PP

       UDPGP 101 vdvPlvlmnSfnTdedtekilkkykkkkvdiltfnqsryPriskesllpvekkakkeekeewyPpGhGdlyesLknsglldkllaeGkeyiFvsniDNl 199
                 +dvPl+lmnSfnTd+dte+++kky+ ++++i+ fnqs++Pr++k+s+lpv+++ + +  ++wyPpGhGdl+esL++sg ld l+a+G+e++Fvsn DNl
  CCD23203.1 151 SDVPLLLMNSFNTDKDTEHLIKKYSANRIRIRSFNQSKFPRVYKDSMLPVPTTIN-DPLDAWYPPGHGDLFESLHASGELDALIAQGREILFVSNGDNL 248
                 ******************************************************6.678**************************************** PP

       UDPGP 200 gatvDlkilnllvekkaeflmevtektradvkgGtlieyegklrlleiaqvpkehveefksvkkfkifntnniwinlkalkrlveekelkleiivnkkt 298
                 gatvDlkiln+++e++ae++me+t+ktradvkgGtli+y+g++rlle+aqvpkeh++efk+++kfk fntnn+winlka+krl+e+++l++eii n kt
  CCD23203.1 249 GATVDLKILNHMLETGAEYIMELTDKTRADVKGGTLINYDGQVRLLEVAQVPKEHIDEFKNIRKFKNFNTNNLWINLKAIKRLIESSALQMEIIPNGKT 347
                 **************************************************************************************************9 PP

       UDPGP 299 ld.egek..viqletavgaaiksFkkavginVpRsrflpvkttsdlLlvksdlysleegslvlnpkrsfktvplvkLgsefkkveefqkrfksipslle 394
                 +  +g++  v+qleta+gaai++F++a+g+ VpRsrflpvkt+sdlLlvksdl+ l++g l+l+p+r+ + +pl+kLgs+fkkv++f++r+++ip+++e
  CCD23203.1 348 IVrNGHEinVLQLETACGAAIRHFEGAHGVVVPRSRFLPVKTCSDLLLVKSDLFYLQHGALKLDPTRF-GPNPLIKLGSHFKKVSNFNSRISHIPKIVE 445
                 987777678**********************************************************7.89**************************** PP

       UDPGP 395 ldhltvsGdvtfgknvtLk 413
                 ldhlt++G+v++gk+vtL+
  CCD23203.1 446 LDHLTITGNVFLGKDVTLR 464
                 *****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3742.61
//
Query:       CCD23204.1  [L=736]
Description: hypothetical protein NDAI_0B01700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-55  188.6  51.8    1.5e-55  188.6  51.8    3.9  2  MIS13     Mis12-Mtw1 protein family


Domain annotation for each model (and alignments):
>> MIS13  Mis12-Mtw1 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -15.0  17.1         1   1.8e+04     138     151 ..      50      73 ..      17     193 .. 0.58
   2 !  188.6  51.8   8.5e-60   1.5e-55      14     298 ..     329     722 ..     316     725 .. 0.89

  Alignments for each domain:
  == domain 1  score: -15.0 bits;  conditional E-value: 1
                 HCSTTGCCCSXXX............. CS
       MIS13 138 ndteltklFednd............k 151
                 n t +tk  ++n+            k
  CCD23204.1  50 NHTGITK--NKNKnnknknknknelK 73 
                 5555555..22222222222222220 PP

  == domain 2  score: 188.6 bits;  conditional E-value: 8.5e-60
                 X.XXXXXXXXXXXXXXXXXXXXX........XXXXXXXC..CHHCCTSXTT.STCHHHHHHHHHHHHHHHHHHHC................HTTT.TT. CS
       MIS13  14 e.kkerarnkRrsslsqrGRRlSsLgtgf.tiaspHkdvpesefykhiens.laeplrlrqLlnWclkralekleeka.........kseskkeetees 100
                     +++rnkR+s  +qrG+RlS L++++ +i+spHkd+p+ efykhi n  ++++l+l+qL+nWc+ r+le l+ k+         + +++    ++ 
  CCD23204.1 329 TnLTNQTRNKRKSLTQQRGKRLSILSQDNnNIISPHKDIPQDEFYKHIANIsFGKNLQLKQLFNWCMIRSLEILQSKSksisksrarQNNTTA--NNNN 425
                 2478899********************9999*******************99***********************888899966432222222..2344 PP

                 HHHCHHHHHCCHCCHHHHCHHCHHCCHHHHHHCHHH............................THCSTTGCCC.SXXX.................... CS
       MIS13 101 dakkiarvIikeflrdlkkgkisidWeareeeeeed............................endteltklF.ednd.................... 150
                 +   i+ +Iik+f+ dl+ g i+idWe ++ e+e+d                            ++dtel++lF +d +                    
  CCD23204.1 426 NTDMITLNIIKNFVTDLRRGIIDIDWEPEPVENEDDneqenadddeeeeenedekedltngfesYEDTELRQLFpDDTTtirrkqeeaimnknrkqnqs 524
                 55679************************999999899************************************77777******************** PP

                 ..........................................XXSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH...HH.HHHHHHTT-..-- CS
       MIS13 151 ......................................kkklpnaknieneenlailkekikalknEikeWaklladskdpdkeiqkekklvdse..ak 209
                                                       kk+lpn+kn++n +nl+il+eki+++k Ei +Wa +l d+ dp+  ++ +k+ v+ +  + 
  CCD23204.1 525 nkktmkkktknkvirsavtndvdddcynnnnynnnkkkKKLLPNSKNVQNLNNLNILNEKINKIKSEIDQWATSL-DAVDPEFGWKYIKSIVNDNidVD 622
                 *************************************999***********************************.**************998887999 PP

                 --------S--.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSTTTSSXXXXXXXXXXXXX......XXXXXXXXXX CS
       MIS13 210 idsdtqepdta.......qrilsdnanveskletkvDeLqdsvhkLdsaskalnelstqklqklsrllakrskkekkssesrkks....tkkLlrglss 297
                 ++++ +e ++         +  +  +++ ++l tk+D+L++++h  +s+s al ++s+qkl kls  +++  ++++ ++++ k       k Llrgls 
  CCD23204.1 623 VENNRKEDELSiktkstqVEPAEMMSSLYEDLMTKLDALHMNSHYVNSHSTALDKISSQKLLKLSDHINESNMHKRYEDNNAKNGrvdmNKLLLRGLSE 721
                 9999999999888877654445667889999**********************************9998887777776665554489989999*****7 PP

                 X CS
       MIS13 298 s 298
                 s
  CCD23204.1 722 S 722
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2819  (0.157231); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.47
# Mc/sec: 4716.24
//
Query:       CCD23205.1  [L=454]
Description: hypothetical protein NDAI_0B01710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-08   32.6   0.5     0.0012   19.1   0.0    4.5  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0018   19.1   7.0        3.2    8.8   0.8    5.5  7  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.19   11.7   0.3        1.9    8.5   0.0    2.8  3  PQQ          PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.8   4.8e+03      51      68 ..      66      83 ..      33     100 .. 0.61
   2 !    7.7   0.1   0.00074       4.4      35      88 ..     125     177 ..      66     181 .. 0.81
   3 ?   -2.4   0.0       1.1   6.3e+03      10      25 ..     189     204 ..     184     207 .. 0.68
   4 ?   -3.4   0.0       2.1   1.3e+04      64      90 ..     234     258 ..     231     259 .. 0.75
   5 !   19.1   0.0     2e-07    0.0012      31      90 ..     320     385 ..     291     387 .. 0.76
   6 ?    0.6   0.0      0.12     7e+02      40      72 ..     378     408 ..     376     418 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.8
  ANAPC4_WD40 51 klLavaysdgevrlldae 68
                  ++ + +s+++v+ +d +
   CCD23205.1 66 DIIEIDMSNNSVSYFDKH 83
                 344444555555555544 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00074
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldae.sgkvvhslsvksekavtclg 88 
                  +++ ++v +  + +dgk+L  +  +g++ l++++ sg   +++s  +e  v  + 
   CCD23205.1 125 QGHTESVIASGFTMDGKFLITGDMNGKILLHKSNkSGSQWKQVSQLQE--VDEVV 177
                  5667778888999***************99987614555555555444..55555 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.1
  ANAPC4_WD40  10 iAlatedgellvfRln 25 
                  +A++ +dg+++++ +n
   CCD23205.1 189 FAFGAADGSVWCYQIN 204
                  5666677777776665 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 2.1
  ANAPC4_WD40  64 lldaesgkvvhslsvksekavtclgWg 90 
                  l +a +g+ ++ +s++ ++  + +gW+
   CCD23205.1 234 LDKAANGESLELISCSLDS--SIVGWN 258
                  5578899999999998884..777886 PP

  == domain 5  score: 19.1 bits;  conditional E-value: 2e-07
  ANAPC4_WD40  31 tl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +l        e+++ d +++s+aW+++  l+a +   ge+ l+d  + +v h++  +++  +t+l + 
   CCD23205.1 320 QLstvielkpEQEELDASIESIAWSQNFPLMALGLVSGEILLYDTTTWRVRHKFVLDDS--ITKLIFD 385
                  334444447788999***************************************88877..8888765 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.12
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  ++++L + +++  L  ++ +g+v  +d+++g+ 
   CCD23205.1 378 SITKLIFDNND--LFASCINGKVYQYDSKTGQE 408
                  56677766655..78899**********99985 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.8   0.00053       3.2       7      37 ..      80     111 ..      74     112 .. 0.87
   2 !    7.1   0.0    0.0017        10       5      36 ..     122     154 ..     119     156 .. 0.78
   3 ?   -3.4   0.0         3   1.8e+04      30      34 ..     194     198 ..     187     208 .. 0.54
   4 ?   -0.1   0.0      0.34     2e+03      25      38 .]     245     258 ..     214     258 .. 0.82
   5 ?   -0.5   0.0      0.44   2.6e+03      12      26 ..     337     351 ..     330     365 .. 0.70
   6 ?   -1.0   0.0      0.64   3.8e+03      13      38 .]     379     402 ..     369     402 .. 0.60
   7 ?   -1.5   0.0      0.97   5.8e+03       3      16 ..     408     422 ..     406     445 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00053
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 ++ H +sv  ++ +p  +++++G+ D+  ++W
  CCD23205.1  80 FDKHtDSVFTISHHPTLPLICTGGGDNVAHLW 111
                 6679778****************88******* PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0017
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 +tl GH  sv +  f  dg++l++G+++g++ +
  CCD23205.1 122 GTLQGHtESVIASGFTMDGKFLITGDMNGKILL 154
                 58999976653444699********99999975 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3
                 TTSEE CS
        WD40  30 dDgtv 34 
                  Dg+v
  CCD23205.1 194 ADGSV 198
                 34444 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.34
                 EEEEETTSEEEEEE CS
        WD40  25 lasGsdDgtvriWd 38 
                 l+s+s D ++  W+
  CCD23205.1 245 LISCSLDSSIVGWN 258
                 578999*9998886 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.44
                 SEEEEEEETTSSEEE CS
        WD40  12 svtslafspdgawla 26 
                 s+ s+a+s++ +++a
  CCD23205.1 337 SIESIAWSQNFPLMA 351
                 4999*9999988853 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 0.64
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 +t l f+ +  ++a ++ +g+v+ +d
  CCD23205.1 379 ITKLIFDNND-LFA-SCINGKVYQYD 402
                 7777555554.445.56677776665 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 0.97
                 EEEEEESS.SSEEEE CS
        WD40   3 clrtltGH.ssvtsl 16 
                    ++tGH  +v ++
  CCD23205.1 408 EKFVCTGHnMGVLDF 422
                 556778884446555 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.6   3.6e+03      12      22 ..     188     198 ..     186     199 .. 0.86
   2 ?   -2.1   0.2      0.77   4.6e+03       3      16 ..     298     311 ..     296     318 .. 0.65
   3 ?    8.5   0.0   0.00032       1.9       1      23 [.     387     409 ..     387     409 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.6
                 EEEEETTTCCE CS
         PQQ  12 lyAlDadTGkv 22 
                 ++A+ a++G v
  CCD23205.1 188 IFAFGAADGSV 198
                 89*****9975 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.77
                 EEEEETTSEEEEEE CS
         PQQ   3 vylgsadGylyAlD 16 
                 + +g ++G+l  ++
  CCD23205.1 298 IAAGANNGVLAIIN 311
                 44558888887777 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00032
                 TEEEEEETTSEEEEEETTTCCEE CS
         PQQ   1 gvvylgsadGylyAlDadTGkvl 23 
                 +++++ + +G++y +D +TG+++
  CCD23205.1 387 NDLFASCINGKVYQYDSKTGQEK 409
                 567888**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3225.00
//
Query:       CCD23206.1  [L=547]
Description: hypothetical protein NDAI_0B01720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-71  240.1   0.6    5.7e-71  239.5   0.6    1.2  1  Asp           Eukaryotic aspartyl protease
    2.5e-07   31.1   2.4    3.1e-07   30.8   0.0    2.2  2  TAXi_N        Xylanase inhibitor N-terminal
     0.0041   17.3   0.0     0.0099   16.1   0.0    1.6  1  Pox_vIL-18BP  Orthopoxvirus interleukin 18 binding protein


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.5   0.6   9.5e-75   5.7e-71       2     314 ..      56     412 ..      55     413 .. 0.92

  Alignments for each domain:
  == domain 1  score: 239.5 bits;  conditional E-value: 9.5e-75
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTT......................EST.SHCHHTSS-B-GGG-TT-E...EEEEEEEEECTTS.EEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................xxx.xxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxx.xxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpssk......................ckk.ssackshstydpskSstyk...kngkslsisYGdg.svsGfl 73 
                 Y++++++Gtp+q+ tv++D GSsd+W ++sk                      +++ +++c+  ++y+p+ Ssty+   +++++++++Y dg   +G++
  CCD23206.1  56 YATTLQVGTPPQNITVLLDSGSSDFWLMDSKnpfcmenycnsteipkynndliTQNlTIDCSYFNKYNPEISSTYQklpNDNSRFYLQYTDGsFEDGIW 154
                 9***************************************************966669*****************966668999********8889*** PP

                 EEEEEEETTEEEEEEEEEEEEEESSHHHTTSSSSEEEE-S-GGGSCGG........SCCHHHH....HHHTTSSSSSEEEEEE-STTSSEEEEEESSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp  74 sqdtvkvggltvknqefgeatkepgstflaakfdGiLGlgfkeisvee........atpvfdn....lvsqglikepvfsvylnreeeeggeivfGgvD 160
                 s++tv++++  ++ ++++ a+ +++      ++ G+LG++f++ ++++            + n    l+++++i+  ++s+yln + ++ g+++fG++D
  CCD23206.1 155 SKETVQIDNYNITSLQLAVANYATT------PVGGLLGISFPRRESVKgydgalneY---YPNfpqvLKNENIIDIVLYSMYLN-DLNQDGSLLFGAID 243
                 ********************99999......599************99888874443...4445559*****************.99999********* PP

                 GGGEEEEEEEEEESS........TSSTEEEEEEEEETTEEE......EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGS CS
                 xxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 161 eskykGsltyvpvts........kgywqielesvtvggktv......lcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslssl 245
                 +sk++G++++ p+++         +++++++++v +++++       + +s++ ++lD+GT+l+ +p++ ++k+a+ ++a++se+   y+++C s++ l
  CCD23206.1 244 TSKFEGDMITYPMVNvypnvvdkPATLALTIQGVAAQNTNDctqnetFMTSKFPVLLDSGTTLMSAPKELADKMADFVNATYSEDDRIYILNCPSQEVL 342
                 **************99*999998899********9998776667777999********************************************96655 PP

                 EEE..EEEETTEEEEEEGGGGEEEESSSTTSEEEESEEECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEE CS
                 xxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 246 pdi..sftiggakitvpvselvlkeeeseesqCilglvseeegdlwiLGdvFlrsayvvfdldnnrvglAe 314
                 +di   f++gg ++++p+++++l ++++ ++ C +g+ +e ++d ++LGd+Fl+ +y vfdld  +++lA+
  CCD23206.1 343 NDIeyIFDFGGLQVKIPLEKFILPSDDG-SGPCAFGVLPETTTDRMVLGDIFLSFVYAVFDLDHYQISLAN 412
                 554117899***************9985.59**************************************97 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   5.2e-11   3.1e-07       1     140 [.      56     189 ..      56     241 .. 0.64
   2 ?   -1.0   0.8       0.3   1.8e+03      64      86 ..     462     484 ..     438     541 .. 0.41

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 5.2e-11
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpcka.......cssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgsss 92 
                 Y +++++Gtppq++++++D Gs+ +W+  +   +       c+s + p +++   +++ ++ cs     +    ss+ ++ ++++ +++ +y +dgs+ 
  CCD23206.1  56 YATTLQVGTPPQNITVLLDSGSSDFWLMDSK--NpfcmenyCNSTEIPKYNNDLITQNLTIDCSYFNKYN-PEISSTYQKLPNDNSRFYLQY-TDGSFE 150
                 99************************76522..1223454566666666666666666666665433332.334444466688899999999.5***** PP

      TAXi_N  93 sGvlatdtltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLGr 140
                  G  +++t+++     ++ ++++l ++ ++       + + G+lG ++
  CCD23206.1 151 DGIWSKETVQI-----DNYNITSLQLAVAN----YATTPVGGLLGISF 189
                 ***********.....45566666666654....22223455555554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.3
      TAXi_N  64 ceasssaksgsssstceyeisyg 86 
                 c+a s+++  ++ss+   + s +
  CCD23206.1 462 CKAPSHSTIHKESSSKLTDQSTA 484
                 22222222222222222222221 PP

>> Pox_vIL-18BP  Orthopoxvirus interleukin 18 binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.7e-06    0.0099      13      93 ..      90     171 ..      85     180 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.7e-06
  Pox_vIL-18BP  13 cvhsyvnaveikcpnldivtssgefrcsgcvkfmpkfsymywlakdmksdedakfie.hlgegikedetvrtidgrivtlrk 93 
                   c+ +y n++ei   n d++t    + cs   k+ p++s  y    + +s  + ++ +  + +gi   etv+  + +i++l+ 
    CCD23206.1  90 CMENYCNSTEIPKYNNDLITQNLTIDCSYFNKYNPEISSTYQKLPNDNSRFYLQYTDgSFEDGIWSKETVQIDNYNITSLQL 171
                   999**************************************998888999999999735899*********99999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4158.93
//
Query:       CCD23207.1  [L=209]
Description: hypothetical protein NDAI_0B01730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-15   56.4   3.7      5e-15   55.7   3.7    1.3  1  BAG       BAG domain
  ------ inclusion threshold ------
      0.016   15.3   2.9      0.044   13.9   2.9    1.9  1  SAS4      Something about silencing, SAS, complex subunit 4
       0.97    9.1   2.2        1.3    8.6   2.2    1.2  1  DUF5549   Family of unknown function (DUF5549)


Domain annotation for each model (and alignments):
>> BAG  BAG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   3.7   8.4e-19     5e-15       1      74 [.     123     207 ..     123     208 .. 0.84

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 8.4e-19
                 HHHHHHHHHHH.HHHHHHHHHHH.......HHH..HHHHHHHHHHHHHHTCEESTH......HHHHHHHHHHHHHHHHHHHHHHH CS
         BAG   1 Ideilkevetllepeveafektv.....kkekeylylsElLlklLlkLDsieiegd......eeaRekRKeavkevqkllkklDs 74 
                 Id+i+ +++++++ +++ +++++     ++ ++++y++E+LlklL++LD i+++         +++ekRK ++k +q++lk+lDs
  CCD23207.1 123 IDNIQLRFQNEFVTKIDPLLESFdssdeQHIYNRNYYNEMLLKLLIELDDIDLTTIddkqtkMDMKEKRKLVIKDIQTYLKTLDS 207
                 889999999999999999999998543333344457****************9644458999**********************8 PP

>> SAS4  Something about silencing, SAS, complex subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.9   7.4e-06     0.044      56      89 ..     175     208 ..     119     209 .] 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.4e-06
        SAS4  56 itkindpkdkkelerkreltikeieallekferw 89 
                  t+i+d + k+++++kr+l+ik i++ l++ +++
  CCD23207.1 175 LTTIDDKQTKMDMKEKRKLVIKDIQTYLKTLDSL 208
                 577*************************988776 PP

>> DUF5549  Family of unknown function (DUF5549)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.2   0.00022       1.3      50      93 ..      34      77 ..      14      85 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00022
     DUF5549 50 eslasvtvpirldtlsyllhsallgayslqqslpscsctsqpsh 93
                 + as t      t+s ++ sa+     +++ l scsc+s++s 
  CCD23207.1 34 MTSASTTTSTSTSTMSNIIPSAVAKMGCIKKYLSSCSCCSNTSC 77
                566899999999***********99999************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1956  (0.109097); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1589.18
//
Query:       CCD23208.1  [L=1021]
Description: hypothetical protein NDAI_0B01740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0021   18.2   0.2        1.6    9.0   0.0    3.0  2  U-box     U-box domain
     0.0077   16.4   0.0      0.058   13.7   0.0    2.7  1  HEAT      HEAT repeat
  ------ inclusion threshold ------
      0.027   14.7   1.6       0.75   10.1   0.1    3.6  3  DUF5071   Domain of unknown function (DUF5071)
       0.13   12.1   1.0       0.46   10.4   1.0    1.9  1  YrzO      YrzO-like protein
       0.48    9.7   2.8        1.3    8.3   2.8    1.7  1  FAM76     FAM76 protein
       0.73   10.2  10.0        1.4    9.2   2.0    3.4  3  DUF5085   Domain of unknown function (DUF5085)


Domain annotation for each model (and alignments):
>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00052       1.6      12      64 ..      28      80 ..      22      84 .. 0.74
   2 !    5.9   0.0    0.0049        15       9      36 ..     628     655 ..     625     665 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00052
                SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHH CS
       U-box 12 elmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqdqlipnlelKekI 64
                +l   P+     +v+   ++  h+ls ++tdPf+ + ++ d l   l+l ++I
  CCD23208.1 28 TLVGNPMNKITYYVLPNVQLLDHILSISHTDPFNEQSMKLDLLYLILNLEQNI 80
                5555555555556666667899************9999988888777777776 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0049
                 TT-SB-SSEEEETTTEEEEHHHHHHHHT CS
       U-box   9 itlelmkdPvilpsgvvvdrstiekhll 36 
                 i+  ++ +P  + sg++ d++ i++ ++
  CCD23208.1 628 IIQAILNEPFFIDSGISSDQKNIQHINQ 655
                 8899*******************97766 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.9e-05     0.058       2      30 ..     685     713 ..     685     714 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaev 30 
                 ++l+lk ++Dp+++V + +++ + +l ++
  CCD23208.1 685 MDLILKFINDPNWSVQSQCFQLIRNLTSN 713
                 789********************999875 PP

>> DUF5071  Domain of unknown function (DUF5071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.4   1.2e+03      55      78 ..     461     487 ..     456     513 .. 0.67
   2 ?   10.1   0.1   0.00025      0.75      28      70 ..     686     727 ..     672     773 .. 0.70
   3 ?    0.3   0.0      0.27   8.2e+02      48      69 ..     791     812 ..     781     825 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.4
                 GTHHHHHHH...HHSS-HHHHHHHHHH CS
     DUF5071  55 elvkeiaei...LeknDeewkyfvlef 78 
                 ++  +i +i   L++nD+ ++  +l+ 
  CCD23208.1 461 KTLTKIVKIfaaLSSNDDFYRSLLLKH 487
                 4555566663447********999985 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00025
                 HHHHGGGS-TTSTTHHHHHHHHHHTGGGTHHHHHHHHHSS-HH CS
     DUF5071  28 peLLeWlqDlNwPiaspiaelLarfpeelvkeiaeiLeknDee 70 
                   +L+++ D Nw + s++ +l+++  ++  k i+ +L +n +e
  CCD23208.1 686 DLILKFINDPNWSVQSQCFQLIRNLTSNSRKIIK-LLIENFNE 727
                 5579***************998888777666555.44444444 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.27
                 HHHHTGGGTHHHHHHHHHSS-H CS
     DUF5071  48 lLarfpeelvkeiaeiLeknDe 69 
                  L   ++e+ k i eiL+++D+
  CCD23208.1 791 KLIMNQNEILKVISEILSSGDN 812
                 57778899*********99997 PP

>> YrzO  YrzO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.0   0.00015      0.46      13      42 ..     778     807 ..     772     810 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
        YrzO  13 vvCELAAiNRNGRKkiKqqAElielLKElk 42 
                 ++  LAA+N N +K i  q E+++++ E +
  CCD23208.1 778 IIVNLAALNENKKKLIMNQNEILKVISEIL 807
                 6679********************999876 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.8   0.00045       1.3     142     244 ..     863     985 ..     841    1006 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00045
       FAM76 142 eeekrskskkkkskskkskkskekskekkaskkkskkhkkrss....................rlevskleeeklaeekesnetskk..sldsnssdhl 218
                  ++++ +++++  +s++s++s+++  ++++++++ ++h ++s                     ++ v+ ++e++ +++  s ++++   + + n +d  
  CCD23208.1 863 GASNHDADSSSLPSSSSSSSSSSSLGANHEQQHHPHHH-HQSIraesdgtlldlrtrtnenngNVFVTTAKENT-NDKPISADDETMyaHPNNNDNDTT 959
                 22222222222222222222222332233333333333.22222334555554443333333333333333222.233233333333335666667778 PP

       FAM76 219 vavtqLkeeiaslkkqleqkdqelle 244
                 +  ++L ++ a +k+  +  d  + e
  CCD23208.1 960 LSSSNLPTNFAAIKRCQTLEDLGIRE 985
                 88889999999999988877776665 PP

>> DUF5085  Domain of unknown function (DUF5085)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       2.5   7.4e+03      77     118 ..      71     116 ..      53     124 .. 0.64
   2 ?    9.2   2.0   0.00047       1.4      20     134 ..     604     719 ..     588     725 .. 0.80
   3 ?    4.4   0.0     0.014        43      38      88 ..     797     846 ..     772     855 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.5
     DUF5085  77 yyidnllvg..rltskdfekeeeqllkemeefaeennlklis..Py 118
                 y+i nl++      +  + ++ ++++  + +  + nnl+l    P 
  CCD23208.1  71 YLILNLEQNirDSLGTLYLNLVQRIYSIVSNTHNHNNLELYKtiPL 116
                 5555565554212234677777888888888888888887654455 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00047
     DUF5085  20 evledfveliaekdvtikgplifalkqvdldenmyielfiavneelkp.seelkfrsyyyidnllvgrltskdfekeeeqllkemeefaeennlklisP 117
                 + + +fv ++ + +  i    i  + q+ l+e  +i+  i+ +++ ++ ++++k  s +++ nl+    +s++f+ +++  ++ +++f+++ n ++ s 
  CCD23208.1 604 ACICNFVMEFSSLQTFIVKNGIIDIIQAILNEPFFIDSGISSDQKNIQhINQIKTNSLWILRNLMYNCQNSEKFQLLDKISMDLILKFINDPNWSVQSQ 702
                 4555666666555554444445577888899******999987665555************************************************99 PP

     DUF5085 118 yYHifkdsfdeekayie 134
                  +  +++  +++++ i+
  CCD23208.1 703 CFQLIRNLTSNSRKIIK 719
                 99999888888888776 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.014
     DUF5085  38 gplifalkqvdldenmyielfiavneelkpseelkfrsyyyidnllvgrlt 88 
                 + ++  + ++ l    +i+ + av++ +++ + lk  s ++++nll     
  CCD23208.1 797 NEILKVISEI-LSSGDNINYHTAVERRFNNDPSLKLASLWILNNLLWDSTV 846
                 4444444444.34455788**************************987544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1418  (0.0790897); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.42
# Mc/sec: 7271.33
//
Query:       CCD23209.1  [L=254]
Description: hypothetical protein NDAI_0B01750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-44  151.4   3.5    2.2e-44  150.7   3.5    1.3  1  Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
    2.1e-13   50.0   0.2    5.7e-13   48.6   0.2    1.7  1  Ribosomal_L2    Ribosomal Proteins L2, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   3.5   2.4e-48   2.2e-44       1     115 [.      97     224 ..      97     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: 150.7 bits;  conditional E-value: 2.4e-48
                     SSSS-EBSSSS-TTB-BBSE-SSTTS--SSS-SSSB-EEBB-B...SSEEEEEETTS-EEEEETTSBEBES-BS-TTCTT----STTHHHHT... CS
  Ribosomal_L2_C   1 kvGnvlplknipeGtivhnielkpgkggklarsaGtyaqvvak..egkkvtvklpSgevrkvssecrAtiGvvsngehkekklgkAgrkrwl... 90 
                     +vGnvlpl+++peGtiv n+e++pg++g +ar++G+y+ ++++  +++k++v+lpSg ++ +ss++r +iGvv++g++ +k+l+kAgr+ ++   
      CCD23209.1  97 NVGNVLPLGSVPEGTIVSNVEERPGDRGAIARASGNYVIIIGHnpDENKTRVRLPSGAKKIISSDARGVIGVVAGGGRVDKPLLKAGRAFHKyrl 191
                     58*****************************************6559************************************************ PP

                     ..TBS----SSSS-TTTSSS--SS....SS..- CS
  Ribosomal_L2_C  91 ..grrpkvrGvamnpvdHphGGGe....Gk..t 115
                       + +pk+rGvamnpvdHphGGG+    Gk  t
      CCD23209.1 192 krNSWPKTRGVAMNPVDHPHGGGNhqhiGKasT 224
                     *9**********************666666322 PP

>> Ribosomal_L2  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.2   6.4e-17   5.7e-13       4      76 ..      14      89 ..      11      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 6.4e-17
                  TT--BSSTT--------EE-B--S---SS--EEEEEEE--TT-SS-EEEEEETT.....TEEEEEE--SS--SS-EE- CS
  Ribosomal_L2  4 nsgritvrhrggGhkkkyrlidfkrnkekvkgkVveieyDpgRsApiAlvkyed.....gekryiiapeglkvGdtvv 76
                  + + +++r r+g   +k r +d+++++++++g V++i +D gR Ap+A v++ d      ++  +ia eg+++G++++
    CCD23209.1 14 SIFTSHTRLRQG--AAKLRTLDYAERHGYIRGIVKQIVHDAGRGAPLAKVVFRDpykykLREEIFIANEGVHTGQFIY 89
                  44999*******..99**************************************8777666679*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1846.54
//
Query:       CCD23210.1  [L=63]
Description: hypothetical protein NDAI_0B01760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-23   80.4  10.1    1.2e-22   79.9  10.1    1.2  1  Ribosomal_L29e  Ribosomal L29e protein family


Domain annotation for each model (and alignments):
>> Ribosomal_L29e  Ribosomal L29e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9  10.1   6.8e-27   1.2e-22       1      40 []       3      42 ..       3      42 .. 1.00

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 6.8e-27
  Ribosomal_L29e  1 KsKNhTnHNqsrKaHRNGIKkpksqrykslkgvdpkflrN 40
                    KsKNhT+HNq++KaH+NGIKkpk+ +y+slkgvdpkf+rN
      CCD23210.1  3 KSKNHTAHNQTKKAHKNGIKKPKTYKYPSLKGVDPKFRRN 42
                    9*************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 478.71
//
Query:       CCD23211.1  [L=267]
Description: hypothetical protein NDAI_0B01770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-27   94.8   0.0    6.9e-27   94.4   0.0    1.2  1  His_biosynth  Histidine biosynthesis protein


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4   0.0   3.8e-31   6.9e-27       2     222 ..       4     246 ..       3     254 .. 0.76

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 3.8e-31
                   EEEEEEEETTEEEEECTTCS............TCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHCTTHHHHHHHHHHHHHH-SSEEEEESSSSSHH CS
  His_biosynth   2 iipalDlkdGkvVrlvkGdr............fqelryagdpvelakryeeegadelhvvDldaakegreanldlveeiaeevfipvqvGGGIrsle 86 
                    i ++Dl++G+v ++v G+             +++ + +  +  +ak y+ ++++  hv+ l    ++ +a l++++e        +qvGGGI++ +
    CCD23211.1   4 FIGCIDLHNGEVKQIVGGTLtetnkktesdtlKTNFVSQYPSSHYAKLYKTHNVTGSHVIKL--GPNNDTAALEALKEA----PNFLQVGGGINDTN 94 
                   699***************98765444444433333333333334666666666666666666..334444444444444....555*********** PP

                   HHHHHHHCT-SEEEESHHHHH-.....THHHHHHHHHHCGGGEEEEEEEEE...C.EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTT CS
  His_biosynth  87 dveelleagadkviigtaavkn.....pelikelaekfgsqkivvaiDarr...g.ykvaikgwreetgldavelakkleelgageilltdidrdGt 174
                      e+l   a+kvi++++ +++      + +k++++ +g++++v+ + +rr   + + va+++w+  t+l++ e + kl +    e+l++  d +G 
    CCD23211.1  95 -CLEWLVY-ASKVIVTSWLFDKdgsfqMDRLKKISQICGKDRLVIDLSCRRtpsNkWVVAMNKWQTLTNLELNEEVFKLLSEYSDEFLIHAADVEGL 189
                   .7778877.8********8865233226889********************66527***************************************** PP

                   SS---HHHHHHHHHHHS.......SEEEEESS--SHHHHHHHH..HTTCSEEEESHH CS
  His_biosynth 175 lsGpdleltkelaeavk.......ipviasGGvgsledlkelk..segvdavivgsa 222
                   ++G+d el+ +l e++k       i+++++GG++s++dl  ++  s+ + ++  gs 
    CCD23211.1 190 CKGIDEELVTKLYEWTKdikhsesIKIVYAGGAKSVTDLNLVEklSNAKVDLTYGSS 246
                   *****999888877653333333389*************999865555566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1940.30
//
Query:       CCD23212.1  [L=434]
Description: hypothetical protein NDAI_0B01780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-37  128.2   0.0    6.7e-37  126.8   0.0    1.7  1  Tim44     Tim44-like domain


Domain annotation for each model (and alignments):
>> Tim44  Tim44-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.0   3.7e-41   6.7e-37       1     145 [.     273     425 ..     273     427 .. 0.97

  Alignments for each domain:
  == domain 1  score: 126.8 bits;  conditional E-value: 3.7e-41
                 HHHHHHHHHHH-TT--HHHHHHHHHHTHHH.HHHHHHHT-HHHHHHHB-HHHHHHHHHHHHHHHHTT-EE--EEEEEEEEEEEEEEEE..TTEEEEEEE CS
       Tim44   1 lasalaaikqrdpsFdkeeFleeakeayep.ileayakgDletLrkllteevyeefkaeikerakqgltldaellgirevdlkeakie..gdtavltvr 96 
                 +a++++++k +d++F+++ F+++++++++p ileay kgD ++L+k+++e+++++++a+ k  ++qgl++d ++l+ir v++ +ak+   +d +vl+v 
  CCD23212.1 273 SAKVYTQFKLMDTTFTNDGFTRHLRDYIVPeILEAYIKGDEKVLKKWFSEAPFNVYAAQQKVFREQGLFSDGRILDIRGVEIVSAKLLapQDIPVLVVG 371
                 5899*********************************************************************************************** PP

                 EEEEEE-E.E-TTS.-EEEE-TT--EEEEEEEEEEE-...-S-G.GG-EEEEEE CS
       Tim44  97 frtqqisv.tddatGevveGdedkvvevrevwtfeRd...lgse.dpnWrLvei 145
                 +r+q+i++ +++++Ge+++Gde+++v + ++++f+Rd   ++++ +++W+++e+
  CCD23212.1 372 CRAQEINLyKKAKSGEIAAGDESNIVMSSYAMVFTRDpeqIDDDeTEGWKILEF 425
                 ********999999*************************966666*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3250.72
//
Query:       CCD23213.1  [L=350]
Description: hypothetical protein NDAI_0B01790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.012   14.4   0.2      0.012   14.4   0.2    1.6  2  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1     0.071   1.3e+03     117     152 ..      23      62 ..      22     104 .. 0.56
   2 ?   14.4   0.2   6.9e-07     0.012     336     432 ..     233     330 ..     194     344 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.071
     DUF2207 117 nvtitvtlPseaksggdlrawlHg....ldgsttvkkddg 152
                 nvt+ v++P+ ++ ++++ ++         +s+++++++g
  CCD23213.1  23 NVTAIVNFPIVQSTHDESNFFRVQrileRIKSQEINNNNG 62 
                 7888888884444444444443334422222222222222 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 6.9e-07
     DUF2207 336 lkeikkyakkskkkakkfkkalkkwksavkk.....kergyfdkkgkkklkklsalglgliilglilillallllvlllvfllilllillliaiivlll 429
                 l++  k + +sk + k+f++++ + +++ ++      +++ +++++++++++ s + ++l  ++l+l+++ +++l   +++++  +++ll+i++++ ll
  CCD23213.1 233 LEKYTKSLLESK-DFKEFRSTFHEAEEKEQEvlvdaLSSKILNNQSREIIATASPVRWFLYGIILLLTMGYFYTL---CIPFAPACFGLLVIFVLYHLL 327
                 333333333333.88888888888888777799998777777777777776666666666666666555555554...999999999999999888776 PP

     DUF2207 430 fsr 432
                 + +
  CCD23213.1 328 ALY 330
                 654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 2988.59
//
Query:       CCD23214.1  [L=446]
Description: hypothetical protein NDAI_0B01800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-05   23.9  17.0    8.9e-05   22.5  17.0    1.8  1  bZIP_1         bZIP transcription factor
  ------ inclusion threshold ------
       0.94    9.8  11.7        1.9    8.9  10.0    2.3  2  DUF349         Domain of Unknown Function (DUF349)
        1.2    9.6   7.1        3.3    8.2   7.1    1.8  1  IATP           Mitochondrial ATPase inhibitor, IATP
        4.3    6.6   7.7        6.4    6.0   7.7    1.3  1  DUF4407        Domain of unknown function (DUF4407)
          6    6.7  10.9       0.69    9.8   1.6    2.4  2  Auxin_canalis  Auxin canalisation


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5  17.0   2.5e-08   8.9e-05       6      58 ..     187     239 ..     183     245 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 2.5e-08
                 XXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   6 rekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevek 58 
                 ++k+k++NR a++++R+RK a+ +eL ++  + e+  ++L +e+++l+k + +
  CCD23214.1 187 KAKKKAQNRAAQKAFRERKDAKLKELREKLNESEQNRQDLLKEVDSLRKLNME 239
                 57999*******************************************98765 PP

>> DUF349  Domain of Unknown Function (DUF349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  10.0   0.00053       1.9       7      56 ..     195     244 ..     190     261 .. 0.84
   2 ?   -0.5   0.0      0.45   1.6e+03      35      49 ..     259     273 ..     254     294 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00053
      DUF349   7 raacdafferrkahfeeqdaereenlekKealieeaealak.sttdwksat 56 
                 raa++af er++a  +e++++  e  + +++l++e+ +l k ++ ++++ +
  CCD23214.1 195 RAAQKAFRERKDAKLKELREKLNESEQNRQDLLKEVDSLRKlNM-EINAES 244
                 89************************************977555.444444 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.45
      DUF349  35 Kealieeaealakst 49 
                 K+ lieea++   s+
  CCD23214.1 259 KKLLIEEAQSAPSSS 273
                 8899****9984443 PP

>> IATP  Mitochondrial ATPase inhibitor, IATP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.1   0.00093       3.3      59      97 ..     196     234 ..     182     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00093
        IATP  59 sEeeyirqrekekLaeLkeklaeqkeHleeleeHieait 97 
                   ++++r+r+  kL+eL+ekl+e ++ +++l +  + ++
  CCD23214.1 196 AAQKAFRERKDAKLKELREKLNESEQNRQDLLKEVDSLR 234
                 34689*******************999999887777765 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.7    0.0018       6.4     105     158 ..     183     239 ..     120     291 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0018
     DUF4407 105 ekeIdaelaeeqqeeakelkeqlaaa...ltaelaeleaqiaalqaeidaaearlda 158
                 e+eI+a++++++++++k+++e+ +a+   l+++l+e e+++++l +e+d++++   +
  CCD23214.1 183 EEEIKAKKKAQNRAAQKAFRERKDAKlkeLREKLNESEQNRQDLLKEVDSLRKLNME 239
                 566777777777777777766666666666666666666666666666666554333 PP

>> Auxin_canalis  Auxin canalisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.6   0.00019      0.69      58     135 ..     109     197 ..      77     202 .. 0.60
   2 ?    1.8   2.2     0.055     2e+02      37      98 ..     267     329 ..     209     377 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00019
  Auxin_canalis  58 saaeskevspltserlshssgp.............tdsppispsesddvkyiraqnalkpelnllrggksktvgrwlkdrkekkkeeaRaq 135
                    s ++  ++ plt+e++ +++ +              +++  sp++ ++   ++++n+++p+ n + +++++t+    ++ k kkk+++Ra 
     CCD23214.1 109 SLMNPYSSIPLTKENNNNQQYQvphnhqvqnninsFKDALPSPRSKKNS--LNSSNTINPNYNIIDNNNNNTLDLTEEEIKAKKKAQNRAA 197
                    2222222233333222221111222222233333455555677744443..47999999999999999*********************85 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.055
  Auxin_canalis  37 nkfsfassatsqlvleeiesqsaaeskev.spltserlshssgptdsppispsesddvkyira 98 
                    +++  +ss+ +++++++ +s  +++ ++   + +++ + ++ ++++s++ sp+  +d k+   
     CCD23214.1 267 QSAPSSSSSVNNVIIKKNSSDESLNDHQFlLSGANNPMEKHYHHRTSSSSSPHLQNDSKFSFP 329
                    222333444444566555555545544443333333444444457777778888888885443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2542  (0.141781); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 3448.30
//
Query:       CCD23215.1  [L=723]
Description: hypothetical protein NDAI_0B01810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-61  207.1  18.6    3.1e-61  206.7  18.6    1.1  1  Form_Nir_trans  Formate/nitrite transporter


Domain annotation for each model (and alignments):
>> Form_Nir_trans  Formate/nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.7  18.6   1.7e-65   3.1e-61       2     233 ..      13     256 ..      12     260 .. 0.95

  Alignments for each domain:
  == domain 1  score: 206.7 bits;  conditional E-value: 1.7e-65
                     HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCT...TCHHHHHHHHHCCCHHHHHHHHHT---CCCCCCHHHHHHCTTSS CS
  Form_Nir_trans   2 ivekvvaagvkkaklsldklfllgilAGafigfgvllalvvaaalaes...npglakllgglvFpvGlilvvllgaeLfTgntllltlavlkkkv 93 
                     ++ ++va+++kka+l++ +l+l++il+G+++++g+ll++ ++a+ ++    npg+ +llgg++F++Gl++vv++g +Lf++n+l++ +++l+++v
      CCD23215.1  13 AALATVATSMKKARLHIETLILNSILGGFLFSIGGLLYTAIHADNPDLlekNPGILNLLGGCCFGIGLFYVVIMGVDLFNSNILFFSVGLLRGAV 107
                     5678899************************************976669********************************************** PP

                     SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTG.....GHHHHHHHHHCCCSS-HHHHHHHHHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHH CS
  Form_Nir_trans  94 slkkllknwlvvllgNliGsllvalllvvlsgl.....laekllsiaeaklslsfleaflrGilCNwlVclavwlalaakdvigkilaiflpifa 183
                     ++ ++l  w ++l+gNl+Gsl+v++l+v++s++     + +  ++iae+++s sf+e+fl+Gi +N++Vcla++l+l ak ++ k l++ lpi+ 
      CCD23215.1 108 TIYDVLLSWSISLIGNLAGSLFVCYLFVHVSKVgqnphWIAGSRKIAEDRASFSFMETFLKGIAGNFMVCLAIYLQLLAKPTHVKALLLNLPIMS 202
                     ********************************9666555999***************************************************** PP

                     HHHCT---HHHHHHHHHHHHHH....SHHHHHHHCHHHHHHHHHHHHHCCHHHH CS
  Form_Nir_trans 184 fvasgfeHsvanmfliplglll....tvadfilknlipvtlGNivGGallvgll 233
                     fv++g++H+va+m+l+++g+l     +v+++i+k lip+ +GNi+GG+++  l+
      CCD23215.1 203 FVTIGWTHVVADMTLLFTGMLNganvSVGKYIWKLLIPSSIGNIIGGTVFGLLI 256
                     ********************8888889**********************95444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 5344.72
//
Query:       CCD23216.1  [L=625]
Description: hypothetical protein NDAI_0B01820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-31  107.2   0.4    1.3e-30  105.5   0.4    1.8  1  BRAP2         BRCA1-associated protein 2
    6.8e-21   74.4   7.5    1.6e-20   73.1   7.5    1.7  1  zf-UBP        Zn-finger in ubiquitin-hydrolases and other pro
    1.8e-09   37.8  11.0    1.8e-09   37.8  11.0    2.1  1  zf-RING_2     Ring finger domain
    1.3e-06   28.1  10.4    3.2e-06   26.9  10.4    1.7  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    6.3e-06   25.8   5.3    1.9e-05   24.3   5.3    1.9  1  zf-RING_11    RING-like zinc finger
    1.2e-05   25.2   4.6    1.2e-05   25.2   4.6    2.1  2  zf-RING_UBOX  RING-type zinc-finger
    2.8e-05   23.9   9.8    2.8e-05   23.9   9.8    2.0  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    4.7e-05   23.6   7.3    0.00015   22.0   7.3    1.9  1  zf-rbx1       RING-H2 zinc finger domain
    0.00011   22.0   8.3    0.00011   22.0   8.3    2.1  2  zf-RING_5     zinc-RING finger domain
    0.00013   21.8   6.6    0.00013   21.8   6.6    2.3  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0022   18.0   2.8     0.0087   16.1   2.8    2.0  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
  ------ inclusion threshold ------
      0.014   15.3  11.8      0.014   15.3  11.8    3.2  3  Prok-RING_4   Prokaryotic RING finger family 4
      0.041   13.6   0.9       0.13   12.1   0.9    1.8  1  zf-UBP_var    Variant UBP zinc finger
          1    9.4   6.4        7.5    6.6   0.6    3.0  3  Flp_N         Recombinase Flp protein N-terminus
        1.2    9.0  14.3       0.06   13.2   8.1    2.0  2  zf-RING_4     RING/Ubox like zinc-binding domain
        2.4    7.0   8.7        4.1    6.2   8.7    1.3  1  LMBR1         LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> BRAP2  BRCA1-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.4   1.1e-33   1.3e-30       5      95 ..     139     234 ..     136     237 .. 0.94

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 1.1e-33
       BRAP2   5 srstllcilavPsylsladllkFv..gsvlekvseiriirdgken...rymvLikfkdqesadeFykefngkkFssleeevChvvfvkevevtesa 95 
                 +++t++cil+vP+y++++dll F+  +++++++s++ri+r+++     ++mvL+kf++   a++F+++fngk+Fs++++e+Chv+f+ke++++++ 
  CCD23216.1 139 GDDTMVCILFVPTYFTVHDLLYFYigDEIVNQISHFRILRNKQGGvgfNFMVLMKFREPLMAKNFKDKFNGKSFSKMDPETCHVIFIKEIVFKSKL 234
                 789********************9855*************99988899********************************************9876 PP

>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   7.5   1.5e-23   1.6e-20       1      61 [.     330     389 ..     330     392 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 1.5e-23
                 -TTTH--.SSEEEETTT--EEE-TTTT-HHHHHHHHH---EEEETTT--EEETTTTEEBE- CS
      zf-UBP   1 CseCnsenknlWlCLkCghvgCgrksnghalkHyeetrHplavdlstlsvycyscddeved 61 
                 C++C+s  +nlW+CL Cg++gCgr++ +ha+kHye+t H++a+d+ t++v++y+ d++v++
  CCD23216.1 330 CATCGSH-DNLWICLICGNIGCGRYNFKHAIKHYETTSHCFAMDIATQRVWDYAGDNYVHR 389
                 9****88.9****************99********************************96 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8  11.0   1.6e-12   1.8e-09       2      44 .]     267     308 ..     266     308 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.6e-12
   zf-RING_2   2 eCpICleelssads.vlllpCgHvfhreClerwlrssstCPlCr 44 
                 +Cp+Cle+++s+ + +++ pC+H+fh++Cl++w+ s+  CP+Cr
  CCD23216.1 267 TCPVCLERMDSETTgLITIPCQHTFHCSCLDKWNDSR--CPVCR 308
                 7********88777455559*************9666..****9 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9  10.4   2.8e-09   3.2e-06       2      40 .]     268     307 ..     267     307 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 2.8e-09
  zf-C3HC4_2   2 CpiCldmlk...dpsvvtpCgHvfCqkCilrsLeekneCPlC 40 
                 Cp+Cl+++    +++ ++pC+H+f+ +C++++  + ++CP+C
  CCD23216.1 268 CPVCLERMDsetTGLITIPCQHTFHCSCLDKW--NDSRCPVC 307
                 ****99986222456677*************9..777***** PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   5.3   1.7e-08   1.9e-05       2      29 .]     268     296 ..     267     296 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.7e-08
  zf-RING_11   2 CsICLeefkpgq.alfilpCsHtFHfkCI 29 
                 C +CLe +  +   l++ pC HtFH+ C+
  CCD23216.1 268 CPVCLERMDSETtGLITIPCQHTFHCSCL 296
                 *********655388999**********5 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   4.6   1.1e-08   1.2e-05       1      38 [.     268     304 ..     268     305 .. 0.75
   2 ?   -1.0   0.3       1.6   1.8e+03       1       5 [.     304     308 ..     304     334 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.1e-08
  zf-RING_UBOX   1 CpIClelftdP...lvl.pCGHtFCreClwelskslegafkC 38 
                   Cp+Cle ++     l++ pC+HtF+ +Cl     ++ +  +C
    CCD23216.1 268 CPVCLERMDSEttgLITiPCQHTFHCSCL-----DKWNDSRC 304
                   *********3345877669**********.....33444445 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.6
  zf-RING_UBOX   1 CpICl 5  
                   Cp+C+
    CCD23216.1 304 CPVCR 308
                   9***7 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   9.8   2.5e-08   2.8e-05       1      41 []     268     307 ..     268     307 .. 0.96
   2 ?   -2.6   0.1       4.7   5.3e+03      33      41 .]     325     333 ..     317     333 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.5e-08
                 -TTT-S--SS-E....E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn...elleCkHsfCskCirkilksrkkvkCPlC 41 
                 Cp+Cle +  ++    +++C+H+f+++C++k+++      CP+C
  CCD23216.1 268 CPVCLERMDSETtglITIPCQHTFHCSCLDKWND----SRCPVC 307
                 **********999*********************....66***9 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.7
                 TSSB--TTT CS
    zf-C3HC4  33 rkkvkCPlC 41 
                 +++ +C +C
  CCD23216.1 325 DSNAPCATC 333
                 577889999 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   7.3   1.4e-07   0.00015      13      55 .]     267     308 ..     261     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.4e-07
     zf-rbx1  13 acieckapgdee.cpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 +c+ c +  d+e + +++  C+H+FH  C++kW ++  +CP+cr
  CCD23216.1 267 TCPVCLERMDSEtTGLITIPCQHTFHCSCLDKWNDS--RCPVCR 308
                 68888888777756666679*************876..8****8 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   8.3     1e-07   0.00011       2      43 ..     268     308 ..     267     309 .. 0.95
   2 ?   -1.9   1.0         3   3.4e+03      25      43 ..     330     346 ..     326     347 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1e-07
   zf-RING_5   2 CnkCfekl.skeekfyltsCgHifCekClkkllekeavCpiCr 43 
                 C++C e++ s++ + ++ +C+H+f+ +Cl+k    + +Cp+Cr
  CCD23216.1 268 CPVCLERMdSETTGLITIPCQHTFHCSCLDKWN--DSRCPVCR 308
                 ********888999*******************..*******8 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3
   zf-RING_5  25 CekClkkllekeavCpiCr 43 
                 C +C ++       C iC+
  CCD23216.1 330 CATCGSHDN--LWICLICG 346
                 777877777..77888886 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   6.6   1.1e-07   0.00013       4      44 ..     267     308 ..     264     312 .. 0.82
   2 ?    0.3   2.5      0.59   6.6e+02       3      26 ..     328     350 ..     326     352 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.1e-07
                 B-TTTSSS....BS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT- CS
  zf-C3HC4_3   4 eCviCler....prnvvllpCgHlvlCeeCaekllkrkkkCpiCr 44 
                 +C++Cler        + +pC+H++ C +C++k+  ++ +Cp+Cr
  CCD23216.1 267 TCPVCLERmdseTTGLITIPCQHTFHC-SCLDKW--NDSRCPVCR 308
                 7******754323337889*****999.6*****..99******9 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.59
                 SB-TTTSSSBS-EEETTEEEEEE- CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlC 26 
                  +C  C + +  +++l Cg +  C
  CCD23216.1 328 APCATCGSHDNLWICLICGNI-GC 350
                 679999999999999999977.44 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   2.8   7.8e-06    0.0087      34      79 ..     267     309 ..     253     314 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.8e-06
                 --TTC..STTTTTS-EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11  34 tcpsc..kfpGddcplvlGkckhnfhlhcilkwletetskglcpmcrq 79 
                 tcp c  ++  +   l+   c+h+fh  c+ kw +     ++cp+cr 
  CCD23216.1 267 TCPVCleRMDSETTGLITIPCQHTFHCSCLDKWND-----SRCPVCRY 309
                 8****444555678899999*************76.....57999996 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.018        20      28      43 ..     263     278 ..     258     281 .. 0.77
   2 ?   15.3  11.8   1.2e-05     0.014       1      37 [.     268     308 ..     268     313 .. 0.84
   3 ?   -2.0   2.4       3.1   3.5e+03      21      38 ..     330     347 ..     330     355 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.018
  Prok-RING_4  28 kdlssCPlCqrrisks 43 
                   +l +CP+C +r++++
   CCD23216.1 263 VELPTCPVCLERMDSE 278
                  56669*****999876 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.2e-05
  Prok-RING_4   1 CvlCgeq....ekkailepCgHlvCkeCfdskdlssCPlCq 37 
                  C +C e+     +  i +pC+H +  +C+d+++ s+CP+C+
   CCD23216.1 268 CPVCLERmdseTTGLITIPCQHTFHCSCLDKWNDSRCPVCR 308
                  667777666657778999*****9999*************8 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.1
  Prok-RING_4  21 CkeCfdskdlssCPlCqr 38 
                  C +C ++ +l  C +C +
   CCD23216.1 330 CATCGSHDNLWICLICGN 347
                  555555555555655544 PP

>> zf-UBP_var  Variant UBP zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.9   0.00011      0.13      20      61 ..     331     376 ..     329     378 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
  zf-UBP_var  20 dtpesedGlyvcLkcFlgfck....khaekhaektghpvylnikrt 61 
                  t+ s d l +cL c + +c     kha kh+e+t+h +++ i ++
  CCD23216.1 331 ATCGSHDNLWICLICGNIGCGrynfKHAIKHYETTSHCFAMDIATQ 376
                 57889999*********99999******************999876 PP

>> Flp_N  Recombinase Flp protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.6    0.0067       7.5      37      80 ..     439     482 ..     423     484 .. 0.86
   2 ?   -0.9   0.0       1.5   1.7e+03      43      73 ..     483     513 ..     480     519 .. 0.78
   3 ?    4.6   0.2     0.028        31      47      76 ..     543     572 ..     534     578 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0067
                 EES-S-HHHHHHHHHHHSTTSEEEESTT-S---HHHHHHHHHHH CS
       Flp_N  37 eYhlkkaqeLkegLekaikpyeFeikskkkvtdmkellsslelk 80 
                 eYhl+ +q L  +Le   + ye + +  k+ +++ e    +elk
  CCD23216.1 439 EYHLEYVQVLISQLESQREYYELKLEDAKNDSSVVEEKNRVELK 482
                 7********************************99988888776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHSTTSEEEESTT-S---HHHH CS
       Flp_N  43 aqeLkegLekaikpyeFeikskkkvtdmkel 73 
                 + e++++++++ k ye +i   +k+ d++ l
  CCD23216.1 483 MVEMQAQISNIEKKYETNIDKMRKQLDIDGL 513
                 6678888888888888889888888888765 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.028
                 HHHHHHHSTTSEEEESTT-S---HHHHHHH CS
       Flp_N  47 kegLekaikpyeFeikskkkvtdmkellss 76 
                 k+ Le+ +k+  F  +s++k +d +e +++
  CCD23216.1 543 KQDLEEQVKDLMFYLESQEKFKDADESVRE 572
                 356********************9998875 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   8.1   5.3e-05      0.06       1      44 [.     268     308 ..     268     310 .. 0.92
   2 ?   -2.2   0.4       3.3   3.7e+03      12      28 ..     324     345 ..     317     347 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.3e-05
   zf-RING_4   1 cplCdeeldetdkdlkpCeCgyqiClfCyhrileeeegrCPaCr 44 
                 cp+C e++d + + l   +C++ + + C+++     + rCP Cr
  CCD23216.1 268 CPVCLERMDSETTGLITIPCQHTFHCSCLDKWN---DSRCPVCR 308
                 9***************************99666...68*****9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.3
   zf-RING_4  12 dkdlkpC.eCgyq....iClfC 28 
                 +++  pC +Cg +    iCl C
  CCD23216.1 324 GDSNAPCaTCGSHdnlwICLIC 345
                 5556677667633222266666 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.7    0.0036       4.1     193     306 ..     433     575 ..     377     623 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0036
       LMBR1 193 eiksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilk......kvPeeiaeklks.........nenkteeslakl 276
                 ++ ++++++l+++++ +++l++++e  e +led +++ + ++++ + +    k++e+  +      k  ++i +  k+         + ++++++l+k 
  CCD23216.1 433 NFLRNKEYHLEYVQVLISQLESQREYYELKLEDAKNDSSVVEEKNRVEL---KMVEMQAQisniekKYETNIDKMRKQldidglmikGLQENLDKLTKI 528
                 7899**********************99999977776666665554444...55555444221222555555555444999999998888888888888 PP

       LMBR1 277 ekqlikalqkrertekqwkrlleka.lele................d 306
                 ++ + ++ +    +++ +++ ++   + le                 
  CCD23216.1 529 NETTTEEKKMLLLEKQDLEEQVKDLmFYLEsqekfkdadesvregtI 575
                 87777775555444444444444442333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2030  (0.113224); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.46
# Mc/sec: 4115.48
//
Query:       CCD23217.1  [L=686]
Description: hypothetical protein NDAI_0B01830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-42  144.5   0.0      1e-41  142.8   0.0    1.9  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    0.00049   20.2   0.0      0.001   19.2   0.0    1.5  1  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.0   1.1e-45     1e-41       2     199 ..     159     408 ..     158     409 .. 0.88

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 1.1e-45
                      HHH---TT-EEEESS-TTSHHHHHHHHH.TT....TTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC...........EE CS
  Methyltr_RsmB-F   2 llLapqeeetilDlcaaPGgKTthiael.mk....nkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg.........elfD 81 
                      ++L+ +++ t+lD+caaPG+KT+ + e   k    ++g vvA+da+++R + +++ lkrL+  n++v++ Da+ ++++  +          +fD
       CCD23217.1 159 IVLEVEPHHTVLDMCAAPGSKTAQLIEAlHKdtdePTGFVVANDADAKRSHMLVHQLKRLNSANLMVVNHDAQFFPRIKLHtdaekkkemLKFD 252
                      7899*******************9887624322225789**********************************9998877777888998889** PP

                      EEEEEE--CCGGGTTT-TCHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-.TTEEEESSBSTTSTTSS CS
  Methyltr_RsmB-F  82 riLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkr.edvelvetelsepkglk 174
                      riL D+PCsg g++r++ +v    + +    l++ q ++l+  ++llk+gG lvYsTCs+++ Ene+v++eaL+k   +++lv+ +  + +gl 
       CCD23217.1 253 RILCDVPCSGDGTMRKNVNVWKDWNTQGGLGLHTVQLNILNRGLNLLKSGGRLVYSTCSMNPIENEAVVAEALRKWgSKIKLVNCDD-KLVGLV 345
                      ********************77778888999*******************************************9725677777632.224444 PP

                      ECEEC......................................TSEEE-TTTTSS-SEEEEEE CS
  Methyltr_RsmB-F 175 lgeea......................................gtlrllPhtenkdgffiakl 199
                       +++                                       + +r++Ph++n+ gffi+ +
       CCD23217.1 346 RSKGIsnwpvldrnmavknkgdegtieswfppteeereifhldSCIRVYPHQQNTGGFFITVF 408
                      444447899**************************************************9866 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.2e-07     0.001      20     138 ..     164     312 ..     139     338 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.2e-07
                 -TT-EEEECT-TTSHHHHHHCCT.T......-SEEEEEESSSS.........HHH..TTEEEECS-CCCSSHHHHHCHCHHH...SSEEEEEE--S-SS CS
        FtsJ  20 kpgktvvDlgaaPGgwsqvllqrlga.....kgkvvavDlqpm.........apl..pgvttiqgditdpetiekikealse...rkvdlvvsDgapdv 99 
                 +p +tv+D +aaPG+ +  l + l++     +g vva D             + l   ++ +++ d +    i++  +a ++    k+d +++D+   +
  CCD23217.1 164 EPHHTVLDMCAAPGSKTAQLIEALHKdtdepTGFVVANDADAKrshmlvhqlKRLnsANLMVVNHDAQFFPRIKLHTDAEKKkemLKFDRILCDVP--C 260
                 5889********************6655544599*****977756666654423333455555777776666666666555555568*******96..4 PP

                 -CHHHHHHHHH.............CCCCHHHHCCHCCCCECCCEEEECCCHC CS
        FtsJ 100 sgvhdldeylq.............sqLllaalelalkllkpggtfvlkifrg 138
                 sg  +  + ++                 l+ l+ +l+llk gg +v  ++  
  CCD23217.1 261 SGDGTMRKNVNvwkdwntqgglglHTVQLNILNRGLNLLKSGGRLVYSTCSM 312
                 4432222222224456666664443555555556888999999988777763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4790.48
//
Query:       CCD23218.1  [L=359]
Description: hypothetical protein NDAI_0B01840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-08   34.0  17.6    2.4e-08   34.0  17.6    2.8  3  zf-UBR    Putative zinc finger in N-recognin (UBR box)
  ------ inclusion threshold ------
      0.037   13.7   0.0      0.074   12.7   0.0    1.4  1  GT-D      Glycosyltransferase GT-D fold


Domain annotation for each model (and alignments):
>> zf-UBR  Putative zinc finger in N-recognin (UBR box)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0  17.6   2.7e-12   2.4e-08       1      68 [.      27      91 ..      27      93 .. 0.85
   2 ?   -1.6   0.6      0.36   3.2e+03      53      58 ..     118     123 ..     106     157 .. 0.59
   3 ?    2.1   0.1     0.024   2.2e+02      24      58 ..     186     220 ..     177     227 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 2.7e-12
      zf-UBR  1 kCtkvf.kkgevvyrCltCsldetsviCeeCfkaskHeghelvelstkrnggvCdCGdeeawkeeg.fCk 68
                kCt+++ +  + +++C+t ++    +iC++C+  + H+++++vel+tkrn ++CdCG+e+    ++ +Ck
  CCD23218.1 27 KCTYEMgSIRQQIFACRTHEN---IGICYSCSVMC-HTKCDIVELFTKRN-FTCDCGTERDKMIKEhNCK 91
                599977444599****99988...89*********.*************9.*******997776663687 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.36
      zf-UBR  53 CdCGde 58 
                 C C +e
  CCD23218.1 118 CSCSTE 123
                 444332 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.024
      zf-UBR  24 sviCeeCfkaskHeghelvelstkrnggvCdCGde 58 
                 + iC +C  + +    ++++++ +++   C+ G +
  CCD23218.1 186 AFICWKCISKYDYYFKRILSHHASDKIIQCKLGRD 220
                 689******99999999988888887788877765 PP

>> GT-D  Glycosyltransferase GT-D fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.3e-06     0.074     153     213 ..     194     255 ..     188     266 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.3e-06
        GT-D 153 ekydeileeilki.ekdklvLlalGptatvlaydLakegyqviDiGhidveYewflmkakkk 213
                 +kyd   ++il++ ++dk++   lG  ++++ + + ++g +vi  G+ + eY  fl++  +k
  CCD23218.1 194 SKYDYYFKRILSHhASDKIIQCKLGRDSEIIPDKINENGKRVIEEGQNNGEYSVFLKSDYSK 255
                 6788888888877589***************************************9876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       902  (0.0503096); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2691.66
//
Query:       CCD23219.1  [L=403]
Description: hypothetical protein NDAI_0B01850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-25   89.4   2.4    3.3e-25   88.4   2.4    1.5  1  ArfGap      Putative GTPase activating protein for Arf
    0.00075   19.4   0.0     0.0013   18.6   0.0    1.4  1  UBA         UBA/TS-N domain
  ------ inclusion threshold ------
       0.14   12.4   0.1        0.9    9.7   0.0    2.2  2  Sep15_SelM  Sep15/SelM redox domain


Domain annotation for each model (and alignments):
>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   2.4   5.6e-29   3.3e-25       6     115 ..      14     127 ..       9     129 .. 0.86

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 5.6e-29
                 HHCC.SCCCCB-TTT-SBS--EEETTTTEEE-HHHHHHHCCS....TTT--EEETTTS---HHHHHHHH.HTCHHHHHHHHTTTC-TTTSG-TTCGHHH CS
      ArfGap   6 ellk.epenkvCaDCgakeptWaslnlgvflCieCsgvHrsl...gvhiskvrsltldkwedeelellk.algNkkaneileaklpkeekrskssskek 99 
                 ++l  +++ ++C +Cg+ +p+W+s+++ vflC++C+++H++l   +  +s ++s++ld+w+++el+ +  ++gN++++e+++ k+ + ++  +++++ k
  CCD23219.1  14 NFLAtSQNGNKCGECGSLNPAWCSTTYTVFLCTRCAAIHKKLlnhDPYFSIIKSIQLDHWNNDELQRFLsSGGNRHNMEFWNPKNVQIKYY-DKDDDLK 111
                 44441445569******************************95555569***************9976659************99777777.89999** PP

                 HHHHHHHHHTCHTTCC CS
      ArfGap 100 reefirakYeekkfae 115
                  e+fi++kY  kkf+ 
  CCD23219.1 112 CEDFIKNKYILKKFKY 127
                 **********999975 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.1e-07    0.0013       2      37 .]     167     203 ..     166     203 .. 0.94

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.1e-07
                 CHHHHHHHHHTTS-HH.HHHHHHHHTTTSHHHHHHHH CS
         UBA   2 deeaiqrLveMGFdre.evveALratgnNeErAveyL 37 
                 ++  + rL++MGF +   + eAL+ + ++++ A+++L
  CCD23219.1 167 YSRELRRLQNMGFRDIdINTEALVLARGDLNGAIDIL 203
                 567799*****************************98 PP

>> Sep15_SelM  Sep15/SelM redox domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00015       0.9      53      73 ..      64      84 ..      53      87 .. 0.82
   2 ?   -0.5   0.0      0.23   1.4e+03      33      53 ..      90     110 ..      86     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00015
                --EEEE-SSS-HHHHHHHHHH CS
  Sep15_SelM 53 everislekwdrdeieellee 73
                 +++i+l++w+ de++++l++
  CCD23219.1 64 IIKSIQLDHWNNDELQRFLSS 84
                6789***************98 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.23
                 EEEEESS---EEEEE-SSS-- CS
  Sep15_SelM  33 evkyvrgapPkLilldedgee 53 
                 ++++ + +  +++ +d+d++ 
  CCD23219.1  90 NMEFWNPKNVQIKYYDKDDDL 110
                 688889999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.73s 00:00:01.25 Elapsed: 00:00:00.61
# Mc/sec: 1998.39
//
Query:       CCD23220.1  [L=188]
Description: hypothetical protein NDAI_0B01860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-44  151.5   0.0    2.2e-44  151.3   0.0    1.0  1  Acid_PPase  Acid Phosphatase


Domain annotation for each model (and alignments):
>> Acid_PPase  Acid Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.3   0.0   1.2e-48   2.2e-44       2     167 ..      10     184 ..       9     186 .. 0.96

  Alignments for each domain:
  == domain 1  score: 151.3 bits;  conditional E-value: 1.2e-48
                 --SEEEE-STTTSSSS-TTTSS-S-EEE-TTS.....-EEETT--EE---TTHHHHHHHHHHTT--EEEEE--S-HHHHHHHHHHTT-G.......... CS
  Acid_PPase   2 lpklivFDLDyTLWpfevdtlvsaplkkeskks....evvDrrgeelklypdveeileelkskevklavaSrtdepdlarelLklleindakekekkll 96 
                 +p++++FDLD T+Wp+++dt +s+p+k+  +k+    ++vD++g +l++y+d ++i+ +lk+++v+++ aSrt++p++a+++L+ ++i+  +++  +++
  CCD23220.1  10 YPDVAAFDLDFTVWPCYCDTNLSPPFKEVYNKNkevhTLVDSCGYKLSFYKDIPKIIIDLKKNGVRIVSASRTWAPEIAKQCLRQFKIE-YEGQIIPMI 107
                 8***************************99998889999**************************************************.99******* PP

                 GGESEEEESSS-HHHHHHHHHH....HH---GGGEEEEES-HHHHHHHHTTT-EEEE-SS...S--HHHHHHHHHHHH CS
  Acid_PPase  97 dvfddveiykgsktkhfeklkk....ktgieyedmlfFDdesrnievesrlgvtfvlvpd...Gltreefekglkewr 167
                 ++fdd+++++ sk+ h++ +      +++++  ++++FDdesrn++ve+  gv+f++v+d   G +++ +++ l+e++
  CCD23220.1 108 ELFDDLQWGERSKIGHLKDALVniygHNDLKLLKVCLFDDESRNKDVER-YGVKFIYVKDskhGPSWQLYQNYLDEYD 184
                 ******************9888788899*******************99.********99999*********999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.30s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1323.94
//
Query:       CCD23221.1  [L=374]
Description: hypothetical protein NDAI_0B01870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-06   27.8   0.0    4.5e-06   26.6   0.0    1.7  1  GST_C_2   Glutathione S-transferase, C-terminal domain
     0.0008   19.7   0.1     0.0047   17.2   0.0    2.2  2  GST_N_2   Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0     5e-10   4.5e-06       9      68 ..     244     328 ..     233     329 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 5e-10
                 HHCCHCHHHCTTT--...................-SS.CTTCS--HHHHHHHHHHHHHHHHHHS-......---TT-HHHHHHHH CS
     GST_C_2   9 eqldaaldaleahLa...................dspflfGdqptlaDialapflvrlraagpgf......direaypnlraWle 68 
                  ++++++d++e+ L+                   ++ flfG+q+t  Di+l+++ +r++ ++  +        r++y  ++ W++
  CCD23221.1 244 INFFKDMDKIENKLRevhdtlakeygasneeeilKRFFLFGGQITESDIRLFVTMIRFDSIYAVHfklnyrLVRSDYYYIHLWMR 328
                 5788888888888887888888888877777775555***********************9753346677666688888888886 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.2e-07    0.0047      15      69 ..      69     189 ..      67     190 .. 0.92
   2 ?   -0.9   0.0      0.23     2e+03      36      47 ..     336     364 ..     305     365 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.2e-07
                 CT--EEEEEE.H...-TTSHHHHH...............................................................HHHCTTTSSSEE CS
     GST_N_2  15 kglediisvv.vlepkgfekseef...............................................................prlnprgtVPvL 49 
                 k+l+d+i v+ v++  ++++++ +                                                               +++++ +  P+L
  CCD23221.1  69 KKLTDVIGVSvVHWKLDKKTGWKLlnagetklgenafkidggilssqddtssplgdldessnrlfkdgtfdphygvtqikelydmtdKQYKGEYFWPIL 167
                 99*******779*********999*************************************************************************** PP

                 E-CTTE..EEESHHHHHHHHHH CS
     GST_N_2  50 wdkdgq..vineSseIlrylet 69 
                 wd +++  v+n   +I  +l++
  CCD23221.1 168 WDLKTKtiVNNNWDQIDAILNS 189
                 **86666899988888777765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.23
                 HH.................HHHCTTTSSS CS
     GST_N_2  36 ef.................prlnprgtVP 47 
                  f                  ++np+g VP
  CCD23221.1 336 AFghttdfnhikllythgmRNINPNGIVP 364
                 44555555555555666668999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.31s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2571.88
//
Query:       CCD23222.1  [L=128]
Description: hypothetical protein NDAI_0B01880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.30s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 911.61
//
Query:       CCD23223.1  [L=203]
Description: hypothetical protein NDAI_0B01890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-43  147.0   0.2      8e-43  146.5   0.2    1.2  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD
  ------ inclusion threshold ------
      0.025   14.6   0.1      0.031   14.3   0.1    1.2  1  POC3_POC4    20S proteasome chaperone assembly proteins 3 and


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.2   8.9e-47     8e-43       3     182 .]      22     198 ..      20     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 8.9e-47
  EMP24_GP25L   3 tfklpageekCfyeelkkgtlltgsyqvtdgg....aaldvdlsvkdpdgngerlvkkkdresegdfsftakesgeykvCfdnsfstksskkvsfdie 96 
                  ++ lpa +++Cf+e+l+kg+ +++s+q  d++    ++l+ d+ +++p     +++++  ++++g+++++a++ g++++Cf n++s+ ++k+v+f+i+
   CCD23223.1  22 NVLLPAYGRRCFFEKLSKGDEFSVSFQFGDRDpqssNQLTGDFVLYTPGR--TQVLQSIVNQAHGEVTISAPDGGKFEYCFINENSNVQTKDVTFNIH 117
                  6789****************************999988********5555..999999899999********************************** PP

  EMP24_GP25L  97 vgseasdykdsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyLkrfFk 182
                         y ++++ +  e+l  ++++l++ ++++++eq y+  re+++r+t+estn+rv wwsi+q++v+v+ +++q+yyLkrfF+
   CCD23223.1 118 GTV----YVNVDDPNN-ESLDGSVRTLSKLIKEVQNEQSYIVIRERTHRNTAESTNDRVKWWSIFQVGVVVANSLFQIYYLKRFFE 198
                  754....899999888.9*******************************************************************7 PP

>> POC3_POC4  20S proteasome chaperone assembly proteins 3 and 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   3.4e-06     0.031      79     132 ..     117     169 ..      41     177 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.4e-06
                 -EEEEEEES-TTHCCHHHHHHHHHHHHHCCCTS-EEEEEEECGCT-THHHHTTH CS
   POC3_POC4  79 dvevvvllgnssdmkidivarqiaeLlnkkieppvlyvtissklwrgeedqdsd 132
                 +  v v +++ ++  +d  +r++++L+ ++++ ++ y+ i  ++ r++  + +d
  CCD23223.1 117 HGTVYVNVDDPNNESLDGSVRTLSKLIKEVQNEQS-YIVIRERTHRNTAESTND 169
                 5678899********************99999999.****99999955555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1646.92
//
Query:       CCD23224.1  [L=313]
Description: hypothetical protein NDAI_0B01900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-40  139.0   0.1    3.6e-40  138.7   0.1    1.2  1  Metallophos  Calcineurin-like phosphoesterase
    1.1e-22   80.2   1.5    1.8e-22   79.5   0.5    1.9  2  STPPase_N    Serine-threonine protein phosphatase N-terminal 


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.1     4e-44   3.6e-40       2     201 ..      57     248 ..      56     251 .. 0.94

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 4e-44
                  EEEEEESBTBTTCCTHHHHHHHHHHHH..HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl..lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygyl 88 
                  +i ++gD+H     gq++dll+l++    ++e  ++l+l  GD+vdrg  + e++ l la+++kyp ++++l+GNHe        gf++e++++y   
   CCD23224.1  57 PIKICGDIH-----GQYYDLLRLFEYGgfPPE-SNYLFL--GDYVDRGKQSLETICLlLAYKIKYPENFFILRGNHEcasinriyGFYDECKRRYN-- 144
                  6889*****.....**********77763555.99****..*******77777777779***********************************99.. PP

                  HHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHH CS
  Metallophos  89 gifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgde 182
                      ++w++++++fn+lp+a++++   k++++hGg sp+l +s ++++++ +++++p+ g   d++++d       + + ++g+s + rg + +fg++
   CCD23224.1 145 ---IKLWKTFTDCFNCLPIAAIIDE--KIFCMHGGlSPDL-NSMEQIRRVMRPTDIPDVGllcDLLWSD-------PDKDIVGWSENDRGVSFTFGPD 229
                  ...99********************..********77777.****************************.......********************** PP

                  HHHHHHHHTTESEEEEESS CS
  Metallophos 183 aledllkkygvdlvisGHt 201
                  ++ ++l+k +  l++++H+
   CCD23224.1 230 VVNRFLQKQDMELICRAHQ 248
                  ******************8 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.5   0.5     2e-26   1.8e-22       1      48 []       8      55 ..       8      55 .. 0.97
   2 ?   -2.3   0.0       0.7   6.3e+03      22      32 ..     235     245 ..     231     246 .. 0.83

  Alignments for each domain:
  == domain 1  score: 79.5 bits;  conditional E-value: 2e-26
   STPPase_N  1 vDdiIerLlevrgkpggkkvqLseaEIrqlCakareiFLsQPtLLeLe 48
                vD+iI+rLlevrg+++g++v L+e+EIr+lC+kar+iF++QP+LLeLe
  CCD23224.1  8 VDNIIDRLLEVRGSKPGQQVDLEEHEIRYLCSKARSIFIKQPILLELE 55
                8************8888******************************7 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.7
   STPPase_N  22 LseaEIrqlCa 32 
                 L+ ++++++C+
  CCD23224.1 235 LQKQDMELICR 245
                 8899999***7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2396.74
//
Query:       CCD23225.1  [L=1607]
Description: hypothetical protein NDAI_0B01905 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-14   52.2   0.6    1.8e-05   24.9   0.0    5.1  5  Kelch_6   Kelch motif
      8e-11   41.4   3.4    1.5e-05   24.4   0.0    5.4  5  Kelch_1   Kelch motif
      2e-10   40.7   0.3      0.054   13.8   0.0    5.6  5  Kelch_3   Galactose oxidase, central domain
    2.7e-10   40.1   3.7     0.0071   16.3   0.0    5.0  5  Kelch_4   Galactose oxidase, central domain
    1.3e-08   34.5   0.0     0.0081   16.1   0.0    4.5  4  Kelch_2   Kelch motif
    0.00013   21.8   0.0       0.37   10.8   0.0    3.2  2  Kelch_5   Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.043   1.3e+02       2      23 ..      38      59 ..      37      77 .. 0.81
   2 ?    2.5   0.0     0.068     2e+02      30      44 ..      99     113 ..      98     119 .. 0.87
   3 !   24.9   0.0   5.9e-09   1.8e-05       2      47 ..     131     182 ..     130     187 .. 0.92
   4 !   15.0   0.0   7.3e-06     0.022       8      44 ..     200     236 ..     192     242 .. 0.90
   5 ?   -2.1   0.0       1.8   5.5e+03      30      43 ..     372     385 ..     371     386 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.043
     Kelch_6  2 raghslvsvggkiYifGGytds 23
                r+g +++++ ++iY+ GG+t +
  CCD23225.1 38 RTGAAVTLARSSIYVHGGLTIP 59
                88999999***********996 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.068
     Kelch_6  30 vwvydpetksWeqlp 44 
                 v+ +d++t++We+++
  CCD23225.1  99 VFYLDLITRTWERIE 113
                 7899********986 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 5.9e-09
     Kelch_6   2 raghslvsvggkiYifGGytds......spylnkvwvydpetksWeqlpplp 47 
                 r++hs+++  + +YifGG+  s        ++n +w++d+ t++W+ l+  p
  CCD23225.1 131 RLFHSICVNENALYIFGGLAISpqndyeLIATNELWKLDLYTRKWTLLSKDP 182
                 89*********************************************99655 PP

  == domain 4  score: 15.0 bits;  conditional E-value: 7.3e-06
     Kelch_6   8 vsvggkiYifGGytdsspylnkvwvydpetksWeqlp 44 
                  s++ ++ i+GG+++ +++l  + vy+++t+ We ++
  CCD23225.1 200 DSHDTRLLIVGGLNNMDQPLCTIDVYNLITNEWESIS 236
                 578999****************************997 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.8
     Kelch_6  30 vwvydpetksWeql 43 
                 v++yd++ ++W ql
  CCD23225.1 372 VYIYDISIGKWIQL 385
                 79*********875 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.18   5.5e+02       1      19 [.      37      55 ..      37      57 .. 0.91
   2 ?    2.5   0.1     0.037   1.1e+02      27      42 ..      97     112 ..      95     115 .. 0.86
   3 !    8.7   0.0   0.00043       1.3       2      43 ..     131     179 ..     130     182 .. 0.90
   4 !   24.4   0.0   5.1e-09   1.5e-05       9      44 ..     201     237 ..     196     239 .. 0.94
   5 ?    0.0   0.0      0.22   6.5e+02      28      42 ..     371     385 ..     360     386 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.18
                BBBSEEEEEETTEEEEEEE CS
     Kelch_1  1 aragagavvvggkiYviGG 19
                ar+ga+++  +  iYv GG
  CCD23225.1 37 ARTGAAVTLARSSIYVHGG 55
                6999999999********9 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.037
                 EEEEEEETTTTEEEEE CS
     Kelch_1  27 ssvevyDpetntWrel 42 
                 + v+++D+ t tW+++
  CCD23225.1  97 CEVFYLDLITRTWERI 112
                 6799**********97 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00043
                 BBSEEEEEETTEEEEEEEBCS.......SSBEEEEEEEETTTTEEEEEC CS
     Kelch_1   2 ragagavvvggkiYviGGsdg.......gnalssvevyDpetntWrelp 43 
                 r  ++ +v  + +Y++GG            a++ ++ +D+ t +W+ l+
  CCD23225.1 131 RLFHSICVNENALYIFGGLAIspqndyeLIATNELWKLDLYTRKWTLLS 179
                 6789**************9988999999999999999999999999876 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 5.1e-09
                 EETTEEEEEEEBCS.SSBEEEEEEEETTTTEEEEECC CS
     Kelch_1   9 vvggkiYviGGsdg.gnalssvevyDpetntWrelps 44 
                 ++++++ ++GG ++  ++l+++ vy++ tn+W+ +++
  CCD23225.1 201 SHDTRLLIVGGLNNmDQPLCTIDVYNLITNEWESISN 237
                 5899*****************************9876 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 0.22
                 EEEEEETTTTEEEEE CS
     Kelch_1  28 svevyDpetntWrel 42 
                  v++yD   ++W +l
  CCD23225.1 371 YVYIYDISIGKWIQL 385
                 59**********876 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.22   6.4e+02       3      12 ..      49      58 ..      47      92 .. 0.72
   2 !    5.1   0.0    0.0094        28      23      48 ..     101     138 ..      96     138 .. 0.72
   3 !   12.9   0.0   3.5e-05       0.1       2      37 ..     141     181 ..     140     194 .. 0.76
   4 !   13.8   0.0   1.8e-05     0.054       3      37 ..     205     238 ..     204     241 .. 0.93
   5 ?   -1.7   0.0       1.3   3.9e+03      19      37 ..     368     389 ..     356     394 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.22
     Kelch_3  3 rlyifGGlgd 12
                ++y++GGl+ 
  CCD23225.1 49 SIYVHGGLTI 58
                69******96 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0094
     Kelch_3  23 vydldtntWaei............aslppaRaghaata 48 
                  +dl t tW++i            +s  + R +h++++
  CCD23225.1 101 YLDLITRTWERIetnattalartsSSQFSERLFHSICV 138
                 479*******8888866677554444566888888885 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 3.5e-05
     Kelch_3   2 drlyifGGlgd.dgqdrl....ndvyvydldtntWaeiasl 37 
                 + lyifGGl   + +d++    n+++ +dl t +W+ ++  
  CCD23225.1 141 NALYIFGGLAIsPQNDYEliatNELWKLDLYTRKWTLLSKD 181
                 88********95445555*****************977333 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 1.8e-05
     Kelch_3   3 rlyifGGlgddgqdrlndvyvydldtntWaeiasl 37 
                 rl+i+GGl+ ++ ++l + +vy+l tn+W++i+++
  CCD23225.1 205 RLLIVGGLN-NMDQPLCTIDVYNLITNEWESISNS 238
                 699******.99******************99775 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 1.3
     Kelch_3  19 ndvyvy..dldtntWaei.asl 37 
                 +++yvy  d++ ++W ++ as+
  CCD23225.1 368 SNFYVYiyDISIGKWIQLkASC 389
                 45555555*****999886665 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.028        84       1      21 [.      37      56 ..      37      58 .. 0.85
   2 ?    0.1   0.0      0.29   8.6e+02      32      45 ..     100     114 ..      96     118 .. 0.77
   3 !   16.3   0.0   2.4e-06    0.0071       2      44 ..     131     178 ..     130     182 .. 0.86
   4 !   15.9   0.0   3.3e-06    0.0099      12      47 ..     203     238 ..     198     239 .. 0.92
   5 ?   -1.5   0.0       0.9   2.7e+03      31      44 ..     372     385 ..     357     392 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.028
     Kelch_4  1 pRaghsatsipdgtiylfGGr 21
                +R g+++t   + +iy++GG 
  CCD23225.1 37 ARTGAAVTLA-RSSIYVHGGL 56
                6888888888.58*******7 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.29
     Kelch_4  32 ylldlstntWrrl.g 45 
                 + ldl t+tW+r+ +
  CCD23225.1 100 FYLDLITRTWERIeT 114
                 457999******954 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 2.4e-06
     Kelch_4   2 RaghsatsipdgtiylfGGr.gedg.....tllndlylldlstntWrrl 44 
                 R +hs++++  + +y+fGG   ++       + n+l++ldl t++W+ l
  CCD23225.1 131 RLFHSICVN-ENALYIFGGLaISPQndyelIATNELWKLDLYTRKWTLL 178
                 89*******.69*******633334699******************977 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 3.3e-06
     Kelch_4  12 dgtiylfGGrgedgtllndlylldlstntWrrlgsl 47 
                 d ++ ++GG ++ +++l  +++++l tn+W+ ++++
  CCD23225.1 203 DTRLLIVGGLNNMDQPLCTIDVYNLITNEWESISNS 238
                 5799********99******************9886 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 0.9
     Kelch_4  31 lylldlstntWrrl 44 
                 +y++d+s ++W +l
  CCD23225.1 372 VYIYDISIGKWIQL 385
                 499********666 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.012        36       2      44 ..      38     111 ..      37     113 .. 0.91
   2 !   16.1   0.0   2.7e-06    0.0081       5      49 .]     134     182 ..     131     182 .. 0.96
   3 !    7.7   0.0    0.0013       3.8      10      44 ..     202     234 ..     197     238 .. 0.90
   4 ?   -0.9   0.0      0.64   1.9e+03      15      47 ..     357     387 ..     350     389 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.012
     Kelch_2   2 rgghsssvpggkiyvvGGa...............................htdnpnlsssdvhvldlekhvWee 44 
                 r g +++  ++ iyv GG                                +  ++++ s+ v  ldl +++We+
  CCD23225.1  38 RTGAAVTLARSSIYVHGGLtiplniseinsatlqkelilyfskskdssqsFKNLNDWISCEVFYLDLITRTWER 111
                 678888889999******9999999999999999999999999999999999999*****************97 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 2.7e-06
     Kelch_2   5 hsssvpggkiyvvGGa....htdnpnlsssdvhvldlekhvWeevtplg 49 
                 hs++v ++ +y++GG     ++d  + +++ ++ ldl +++W++++ ++
  CCD23225.1 134 HSICVNENALYIFGGLaispQNDYELIATNELWKLDLYTRKWTLLSKDP 182
                 9*******************************************98765 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0013
     Kelch_2  10 pggkiyvvGGahtdnpnlsssdvhvldlekhvWee 44 
                  + ++++vGG    n++   +++ v++l +++We 
  CCD23225.1 202 HDTRLLIVGGL--NNMDQPLCTIDVYNLITNEWES 234
                 6889*******..********************97 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.64
     Kelch_2  15 yvvGGahtdnpnlsssdvhvldlekhvWeevtp 47 
                 ++  G+ ++n   s + v+++d +  +W  +++
  CCD23225.1 357 LIS-GF-YPNCQASNFYVYIYDISIGKWIQLKA 387
                 444.44.4888888899***********87765 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0016       4.8       4      24 ..      37      57 ..      36      68 .. 0.91
   2 !   10.8   0.0   0.00012      0.37       5      40 ..     131     171 ..     129     172 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0016
     Kelch_5  4 pRaghcavtvsekiYvyGGkv 24
                +R+g+++  + ++iYv+GG +
  CCD23225.1 37 ARTGAAVTLARSSIYVHGGLT 57
                79999999***********76 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00012
     Kelch_5   5 RaghcavtvsekiYvyGGkv...g..rdgsvsddvyvLdlp 40 
                 R  h++++ ++ +Y++GG     +   + +++++++ Ldl 
  CCD23225.1 131 RLFHSICVNENALYIFGGLAispQndYELIATNELWKLDLY 171
                 88899999999*********75525557777********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.91u 0.28s 00:00:01.19 Elapsed: 00:00:00.46
# Mc/sec: 10462.60
//
Query:       CCD23226.1  [L=506]
Description: hypothetical protein NDAI_0B01910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-17   61.4   0.9     0.0014   19.4   0.0    6.6  7  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.035   13.7   0.0       0.14   11.7   0.0    1.9  2  SGL       SMP-30/Gluconolactonase/LRE-like region
      0.044   14.2   3.4        1.6    9.2   0.3    2.9  2  BRCT      BRCA1 C Terminus (BRCT) domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00023       1.4      13      36 ..      28      51 ..      15      53 .. 0.83
   2 !    8.6   0.0   0.00061       3.7      13      38 .]      88     116 ..      63     116 .. 0.60
   3 !    9.8   0.0   0.00025       1.5       5      38 .]     171     205 ..     168     205 .. 0.83
   4 ?    2.7   0.0     0.044   2.6e+02      13      36 ..     230     254 ..     220     256 .. 0.80
   5 !   19.4   0.0   2.3e-07    0.0014      11      38 .]     287     313 ..     270     313 .. 0.80
   6 ?    2.5   0.0     0.051     3e+02      16      37 ..     349     370 ..     319     370 .. 0.84
   7 ?   -3.9   0.0         3   1.8e+04      13      24 ..     480     491 ..     478     497 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00023
                EEEEEEETTSSEEEEEETTSEEEE CS
        WD40 13 vtslafspdgawlasGsdDgtvri 36
                +t++ f++ g++la+G++ g v +
  CCD23226.1 28 ITAVEFDHTGDFLATGDKGGRVVL 51
                7***************98777766 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00061
                 EEEEEEETTSSE....EEEEETTSEEEEEE CS
        WD40  13 vtslafspdgaw....lasGsdDgtvriWd 38 
                 ++ l++ ++++     l+s   D+t+++W+
  CCD23226.1  88 INQLKWLRSSNQrshfLLSTN-DKTIKLWK 116
                 677753333333444488656.*******6 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00025
                 EEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtlt.GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 r+++ +H  +++s+++++d+  ++s++ D  + +W+
  CCD23226.1 171 RIYSnAHtYHINSISTNSDQETFISAD-DLRINLWN 205
                 5665588555************99877.*******8 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.044
                 EEEEEEETTSSEEE..EEETTSEEEE CS
        WD40  13 vtslafspdgawla..sGsdDgtvri 36 
                 +ts  f+p +  l+  s+s +gt+++
  CCD23226.1 230 ITSAEFHPQQCNLFmySSS-KGTIKL 254
                 6888899999997445999.****98 PP

  == domain 5  score: 19.4 bits;  conditional E-value: 2.3e-07
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 ss+++++fspdg+++a + d  tv+iWd
  CCD23226.1 287 SSISDVKFSPDGRYIA-SRDYLTVKIWD 313
                 3499**********97.799*******9 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.051
                 EEEETTSSEEEEEETTSEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriW 37 
                 l fs d++ +++Gs++++ +i+
  CCD23226.1 349 LNFSGDSSSIMTGSYNNNFMIY 370
                 559***********99998886 PP

  == domain 7  score: -3.9 bits;  conditional E-value: 3
                 EEEEEEETTSSE CS
        WD40  13 vtslafspdgaw 24 
                 + +++++p  + 
  CCD23226.1 480 ILHFSWHPRENS 491
                 555666665444 PP

>> SGL  SMP-30/Gluconolactonase/LRE-like region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.043   2.6e+02     136     167 ..     181     212 ..     174     222 .. 0.87
   2 ?   11.7   0.0   2.4e-05      0.14      15     101 ..     204     302 ..     194     309 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.043
         SGL 136 pNGlawspdgktlYlaDsltrkiwaydvdaeg 167
                  N +  ++d++t++ aD l+  +w  d+ +++
  CCD23226.1 181 INSISTNSDQETFISADDLRINLWNLDIPDQS 212
                 59999*******************99987665 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 2.4e-05
         SGL  15 lwvDilgqrihrldpatgketv.........ldtpesvGaiaprkdgrlvvasksglalldlasgeletladeee....dekpllrfNDgvvdpdGrlw 100
                 +  Di+ q+ + +d + ++ +          ++ ++++ +++   +g++ ++  ++ al+d++++++e+++d+ +     e    ++ D++++pdGr++
  CCD23226.1 204 WNLDIPDQSFNIVDIKPNNMEEltevitsaeFHPQQCNLFMYSSSKGTIKLCDMRQNALCDFKTKTFEEYTDPIShnffTE-ITSSISDVKFSPDGRYI 301
                 5556666665555555444444445444433555567778888677***************************66566555.78999*********987 PP

         SGL 101 f 101
                 +
  CCD23226.1 302 A 302
                 6 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.3   0.00026       1.6      24      73 ..      83     128 ..      74     131 .. 0.83
   2 ?    4.6   0.2     0.007        42      50      74 ..     462     485 ..     432     485 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00026
                 HHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETH CS
        BRCT  24 eleelikehGGkvttevskktthlvvgepesrslkylealklnipivhee 73 
                 e+ee+i+ +        s++ +h++ +++  ++ k+++  ++ni++v+e+
  CCD23226.1  83 EIEEKINQLKWLR---SSNQRSHFLLSTN-DKTIKLWKVYEKNIKLVSEN 128
                 5566666666665...89999********.999**************997 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.007
                 SSSHSHHHHHHHHHHTTSEEEETHH CS
        BRCT  50 gepesrslkylealklnipivheew 74 
                 ++  sr+++++  +++++ i+h++w
  CCD23226.1 462 SK-SSRNKEWSNDIDFKKSILHFSW 485
                 23.47******************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1138  (0.0634726); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3385.27
//
Query:       CCD23227.1  [L=119]
Description: hypothetical protein NDAI_0B01920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-52  174.0  11.1    1.1e-51  173.8  11.1    1.0  1  Ribosomal_S26e  Ribosomal protein S26e
  ------ inclusion threshold ------
        0.1   12.7   1.0        0.1   12.7   1.0    2.0  2  Fer4_2          4Fe-4S binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_S26e  Ribosomal protein S26e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8  11.1   1.2e-55   1.1e-51       1     107 [.       1     107 [.       1     108 [. 0.98

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 1.2e-55
                     X--S-SSTT----S-S---EEE-TTT--EEES----EEEEEEESS-SSSHHHHTTSBSSSS----EEEEEEE--HHHHHHTTSS----TTTTS-- CS
  Ribosomal_S26e   1 mtkKRrnngrnkkgrghvkivrCsncarlvpkdKaikrfvvrniveaaavrdlseasvyeeyalPklYiklaycvscaihskvvrvRsredrknr 95 
                     m+kKR +ngrnkkgrghv++vrC nc+++vpkdKaikr+++rniveaaavrdlseasvy+eyalPk+Y+kl+ycvscaih+++vrvRsre+rknr
      CCD23227.1   1 MPKKRASNGRNKKGRGHVNPVRCVNCSKCVPKDKAIKRMAIRNIVEAAAVRDLSEASVYAEYALPKTYNKLHYCVSCAIHARIVRVRSRENRKNR 95 
                     9********************************************************************************************** PP

                     S-S---XXX... CS
  Ribosomal_S26e  96 eppkrvrkkkek 107
                     +pp+r+r+++e+
      CCD23227.1  96 APPQRPRFNREN 107
                     ******998765 PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.0   1.1e-05       0.1       3      17 ..      16      30 ..      14      32 .. 0.88
   2 ?   -1.5   0.3      0.38   3.4e+03      10      13 ..      74      77 ..      73      79 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
      Fer4_2  3 vvvdtdrCigCgaCv 17
                 +v++ rC++C++Cv
  CCD23227.1 16 GHVNPVRCVNCSKCV 30
                689999********8 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.38
      Fer4_2 10 CigC 13
                C++C
  CCD23227.1 74 CVSC 77
                8888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 942.06
//
Query:       CCD23228.1  [L=436]
Description: hypothetical protein NDAI_0B01930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-09   37.9  22.0    5.1e-06   26.6   3.4    3.2  3  zf-C2H2      Zinc finger, C2H2 type
    1.4e-07   31.8  19.4    0.00014   22.4   1.4    3.6  3  zf-C2H2_4    C2H2-type zinc finger
    5.1e-07   29.8  11.6      0.003   17.8   1.1    3.3  3  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
    1.4e-05   25.3   2.7    1.4e-05   25.3   2.7    4.0  4  zf-H2C2_2    Zinc-finger double domain
    0.00089   19.6   7.8       0.31   11.5   3.0    2.9  2  zf-met       Zinc-finger of C2H2 type
    0.00095   19.1   6.5       0.34   11.0   1.4    2.8  2  zf-BED       BED zinc finger
     0.0016   18.6   2.8     0.0016   18.6   2.8    2.4  2  zf-Di19      Drought induced 19 protein (Di19), zinc-binding
  ------ inclusion threshold ------
      0.039   14.4   5.0        4.4    7.8   0.6    3.1  2  zf-C2HE      C2HE / C2H2 / C2HC zinc-binding finger
      0.082   12.8   3.4       0.36   10.8   0.1    2.9  3  PyrI_C       Aspartate carbamoyltransferase regulatory chain,
       0.58   10.2  11.0       0.78    9.8   2.2    2.6  2  zf-C2H2_6    C2H2-type zinc finger
        5.1    7.5  13.7        1.6    9.1   0.5    3.2  3  zf-C2H2_2    C2H2 type zinc-finger (2 copies)


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.0       7.1   1.2e+04      15      23 .]     329     337 ..     326     338 .. 0.73
   2 !   23.3   2.9   3.7e-08   6.1e-05       3      23 .]     386     407 ..     384     407 .. 0.97
   3 !   26.6   3.4   3.1e-09   5.1e-06       1      23 []     413     435 ..     413     435 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.1
                 HHHHHHHCC CS
     zf-C2H2  15 nLkrHirtH 23 
                 + krH + H
  CCD23228.1 329 SNKRHVNEH 337
                 568999995 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 3.7e-08
                 ETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   3 CpdCgksFkrksnLkrHirt.H 23 
                 C++C ++Fkr+++LkrH r+ H
  CCD23228.1 386 CEYCERRFKRQEHLKRHVRSlH 407
                 *******************999 PP

  == domain 3  score: 26.6 bits;  conditional E-value: 3.1e-09
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y+C++C k F+r++nL +Hi+tH
  CCD23228.1 413 YTCHICQKNFSRSDNLSQHIKTH 435
                 9*********************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   1.0       1.5   2.5e+03      17      24 .]     331     338 ..     326     338 .. 0.88
   2 !   19.0   3.0     1e-06    0.0017       1      24 []     384     407 ..     384     407 .. 0.94
   3 !   22.4   1.4   8.8e-08   0.00014       1      23 [.     413     435 ..     413     436 .] 0.97

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.5
   zf-C2H2_4  17 lrHlkthH 24 
                 +rH++ hH
  CCD23228.1 331 KRHVNEHH 338
                 68*****9 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkthH 24 
                 f C++C ++F+++++L+rH+++ H
  CCD23228.1 384 FGCEYCERRFKRQEHLKRHVRSLH 407
                 56*******************998 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 8.8e-08
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 ++C+iC+k+Fs++++L++H+kth
  CCD23228.1 413 YTCHICQKNFSRSDNLSQHIKTH 435
                 89********************9 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.3   2.1e+03      13      24 ..      47      58 ..      44      59 .. 0.82
   2 !   17.5   0.9   2.3e-06    0.0038       1      23 [.     383     405 ..     383     407 .. 0.93
   3 !   17.8   1.1   1.9e-06     0.003       2      24 ..     413     435 ..     412     436 .] 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.3
                 SHHHHHCCTTSH CS
  zf-C2H2_jaz 13 senaldnHlkSK 24
                 + n+++ H+  K
   CCD23228.1 47 TNNVMKRHYLNK 58
                 679*****9766 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 2.3e-06
                  ECBBTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   1 qfYCvlCdKyFksenaldnHlkS 23 
                  qf C++C++ Fk ++ l+ H++S
   CCD23228.1 383 QFGCEYCERRFKRQEHLKRHVRS 405
                  566******************99 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 1.9e-06
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  + C +C+K F+ + +l +H+k++
   CCD23228.1 413 YTCHICQKNFSRSDNLSQHIKTH 435
                  88*******************97 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   1.0       4.1   6.7e+03       3      10 ..     331     338 ..     331     342 .. 0.82
   2 ?    3.1   0.5     0.087   1.4e+02      15      26 .]     384     395 ..     380     395 .. 0.84
   3 !   25.3   2.7   8.7e-09   1.4e-05       1      25 [.     398     423 ..     398     424 .. 0.93
   4 ?    2.6   0.1      0.13   2.1e+02       1       9 [.     427     435 ..     427     436 .] 0.94

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.1
   zf-H2C2_2   3 rrHirkHt 10 
                 +rH  +H+
  CCD23228.1 331 KRHVNEHH 338
                 59999998 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.087
   zf-H2C2_2  15 yeCplCdkaFkt 26 
                 + C++C  +Fk+
  CCD23228.1 384 FGCEYCERRFKR 395
                 56********96 PP

  == domain 3  score: 25.3 bits;  conditional E-value: 8.7e-09
   zf-H2C2_2   1 nLrrHirk.HtgekpyeCplCdkaFk 25 
                 +L+rH r+ H g kpy+C  C k F+
  CCD23228.1 398 HLKRHVRSlHIGVKPYTCHICQKNFS 423
                 79*****77****************7 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.13
   zf-H2C2_2   1 nLrrHirkH 9  
                 nL++Hi++H
  CCD23228.1 427 NLSQHIKTH 435
                 8*******9 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.2   0.00075       1.2       3      22 ..     386     405 ..     384     405 .. 0.93
   2 !   11.5   3.0   0.00019      0.31       1      21 [.     413     433 ..     413     435 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00075
      zf-met   3 CelCnvtfnsesqlksHlqG 22 
                 Ce C ++f+ + +lk H ++
  CCD23228.1 386 CEYCERRFKRQEHLKRHVRS 405
                 999**************997 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00019
      zf-met   1 fyCelCnvtfnsesqlksHlq 21 
                 ++C +C++ f+   +l +H +
  CCD23228.1 413 YTCHICQKNFSRSDNLSQHIK 433
                 89*****************75 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.3   0.00044      0.72      18      43 ..     385     407 ..     376     408 .. 0.87
   2 !   11.0   1.4   0.00021      0.34      18      41 ..     414     434 ..     411     435 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00044
                 EETTTTEE----SSTHHHHHHHHHS- CS
      zf-BED  18 vCryCgkilsrgggttnLkrHLrrkH 43 
                  C yC++ ++r     +LkrH r+ H
  CCD23228.1 385 GCEYCERRFKRQ---EHLKRHVRSLH 407
                 6**********9...*******9988 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00021
                 EETTTTEE----SSTHHHHHHHHH CS
      zf-BED  18 vCryCgkilsrgggttnLkrHLrr 41 
                 +C +C k++sr+    nL++H+++
  CCD23228.1 414 TCHICQKNFSRS---DNLSQHIKT 434
                 7**********8...888888865 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.5       0.2   3.3e+02      19      32 ..     332     345 ..     325     346 .. 0.86
   2 !   18.6   2.8     1e-06    0.0016       2      51 ..     383     434 ..     382     436 .] 0.81

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.2
     zf-Di19  19 eHvedeHrveskev 32 
                 +Hv+++H++++  v
  CCD23228.1 332 RHVNEHHCEDKSAV 345
                 6*******998765 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 1e-06
     zf-Di19   2 sftCPyCgkelt.vkeLveHvedeHrveskevvCPvCaekvtk..dlvaHltl 51 
                 +f C yC++ ++ ++ L +Hv + H    k++ C +C+++ ++  +l +H+++
  CCD23228.1 383 QFGCEYCERRFKrQEHLKRHVRSLHIG-VKPYTCHICQKNFSRsdNLSQHIKT 434
                 799******86516789********87.57899*****9966334*****986 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.6    0.0027       4.4      35      58 ..     381     403 ..     331     406 .. 0.83
   2 ?    7.3   0.3     0.004       6.5      36      61 ..     411     435 ..     407     436 .] 0.82

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0027
     zf-C2HE  35 ktpLkCtrCganfgnkfpkLKeHL 58 
                 ++++ C +C+ + ++   +LK+H 
  CCD23228.1 381 SKQFGCEYCE-RRFKRQEHLKRHV 403
                 57899*****.778888******7 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.004
     zf-C2HE  36 tpLkCtrCganfgnkfpkLKeHLeee 61 
                 +p +C+ C++nf +   +L +H++++
  CCD23228.1 411 KPYTCHICQKNFSR-SDNLSQHIKTH 435
                 699******66655.59999999998 PP

>> PyrI_C  Aspartate carbamoyltransferase regulatory chain, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.6   5.8e+03      24      41 ..     323     341 ..     320     343 .. 0.76
   2 ?   10.8   0.1   0.00022      0.36      31      47 ..     381     397 ..     373     397 .. 0.84
   3 ?    1.5   0.1      0.18   2.9e+02      34      46 ..     413     425 ..     407     426 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.6
                 EEE.EETTTTEEEETTT-- CS
      PyrI_C  24 Fkv.edkekvklkCkYCek 41 
                 Fk+ +d++k ++  + Ce 
  CCD23228.1 323 FKIrTDSNKRHVNEHHCED 341
                 7776888888888899986 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00022
                 TTEEEETTT--EEEHHH CS
      PyrI_C  31 kvklkCkYCekeiseee 47 
                   ++ C+YCe+ ++++e
  CCD23228.1 381 SKQFGCEYCERRFKRQE 397
                 56899********9986 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.18
                 EEETTT--EEEHH CS
      PyrI_C  34 lkCkYCekeisee 46 
                 + C+ C k +s+ 
  CCD23228.1 413 YTCHICQKNFSRS 425
                 89*******9986 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.7     0.019        32       2      20 ..     384     402 ..     383     407 .. 0.79
   2 ?    9.8   2.2   0.00048      0.78       2      24 ..     413     435 ..     413     435 .. 0.96

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.019
   zf-C2H2_6   2 heCsvCsksFpslqaLggH 20 
                 + C +C ++F+ +  L  H
  CCD23228.1 384 FGCEYCERRFKRQEHLKRH 402
                 77*********99766666 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00048
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksH 24 
                 + C++C k F+  ++L  H k+H
  CCD23228.1 413 YTCHICQKNFSRSDNLSQHIKTH 435
                 89*****************9999 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.4   5.5e+03      10      50 ..     146     188 ..     142     191 .. 0.66
   2 ?    9.1   0.5     0.001       1.6      49      72 ..     382     405 ..     374     412 .. 0.87
   3 ?    7.3   0.8    0.0036       5.9      51      73 ..     413     435 ..     405     436 .] 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.4
   zf-C2H2_2  10 keveellehmskkhgffip.ereylv.dleglleylrekieek 50 
                 +++++  + m+++ ++++p  +++l+  ++++++y +  i ++
  CCD23228.1 146 DNFDDDSNEMNDNDNIDFPiIDDTLQtPKKKVIDYFKLSIFNN 188
                 5666667777777777777534445446788999988888775 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.001
   zf-C2H2_2  49 ekleClyCekefkslealreHmkk 72 
                 +++ C yCe++fk +e+l+ H+++
  CCD23228.1 382 KQFGCEYCERRFKRQEHLKRHVRS 405
                 5789*****************987 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0036
   zf-C2H2_2  51 leClyCekefkslealreHmkkk 73 
                 ++C +C+k+f+  ++l +H+k++
  CCD23228.1 413 YTCHICQKNFSRSDNLSQHIKTH 435
                 68*****************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       962  (0.0536561); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.37s 00:00:00.89 Elapsed: 00:00:00.49
# Mc/sec: 2668.30
//
Query:       CCD23229.1  [L=336]
Description: hypothetical protein NDAI_0B01940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-06   26.2  11.4    0.00075   19.8   1.4    2.9  2  zf-C2H2    Zinc finger, C2H2 type
  ------ inclusion threshold ------
      0.013   15.9   0.6      0.013   15.9   0.6    2.6  3  zf-met     Zinc-finger of C2H2 type
      0.051   14.4   1.1      0.051   14.4   1.1    3.3  4  zf-C2H2_4  C2H2-type zinc finger
       0.06   13.8   0.3       0.06   13.8   0.3    3.5  3  zf-H2C2_2  Zinc-finger double domain
       0.28   11.2   5.8       0.32   11.1   2.6    2.5  2  zf-BED     BED zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   1.4   2.1e-07   0.00075       2      23 .]     256     277 ..     255     277 .. 0.96
   2 !   10.5   2.8   0.00019      0.67       1      20 [.     283     304 ..     283     307 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.1e-07
                 EETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                 +C++Cgk ++r+s Lk+H+ +H
  CCD23229.1 256 QCDICGKICSRPSTLKTHYLIH 277
                 7******************999 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00019
                 EEET..TTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHi 20 
                 +kC   +C+k F+ ksn+ rH 
  CCD23229.1 283 FKCAwkGCTKAFNVKSNMLRHF 304
                 899999***************6 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.3       2.9     1e+04      16      21 ..      46      51 ..      46      52 .. 0.86
   2 ?   15.9   0.6   3.6e-06     0.013       2      20 ..     256     274 ..     255     277 .. 0.94
   3 ?   -3.1   0.5       3.5   1.3e+04      21      25 .]     329     333 ..     329     333 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.9
      zf-met 16 lksHlq 21
                l++H+q
  CCD23229.1 46 LQQHYQ 51
                79***8 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 3.6e-06
      zf-met   2 yCelCnvtfnsesqlksHl 20 
                 +C++C + ++ +s+lk+H+
  CCD23229.1 256 QCDICGKICSRPSTLKTHY 274
                 6*****************9 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.5
      zf-met  21 qGKkH 25 
                 +GK+H
  CCD23229.1 329 RGKRH 333
                 79*** PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.4   1.6e+04      16      21 ..      46      51 ..      41      57 .. 0.60
   2 ?   -3.1   0.7         5   1.8e+04      11      20 ..      54      63 ..      48      65 .. 0.59
   3 ?   14.4   1.1   1.4e-05     0.051       2      23 ..     256     277 ..     255     278 .. 0.94
   4 ?    5.4   2.6     0.011        40       1      21 [.     283     305 ..     283     307 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.4
   zf-C2H2_4 16 LlrHlk 21
                L++H +
  CCD23229.1 46 LQQHYQ 51
                555543 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5
   zf-C2H2_4 11 sskkaLlrHl 20
                +++++++ H 
  CCD23229.1 54 RTPDRYQYHH 63
                4555565554 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.4e-05
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                 +C+iCgk +s++++L++H + h
  CCD23229.1 256 QCDICGKICSRPSTLKTHYLIH 277
                 8*****************9998 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.011
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlk 21 
                 fkC +  C+k F+ k+++lrH+k
  CCD23229.1 283 FKCAWkgCTKAFNVKSNMLRHFK 305
                 7888888*****99999****87 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   1.4       0.4   1.4e+03      13      22 ..     253     262 ..     248     265 .. 0.82
   2 ?   13.8   0.3   1.7e-05      0.06       2      25 ..     270     295 ..     269     295 .. 0.91
   3 ?    1.1   0.2      0.17   6.1e+02       3      12 ..     301     310 ..     299     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.4
   zf-H2C2_2  13 kpyeCplCdk 22 
                 ++ +C+ C+k
  CCD23229.1 253 NKKQCDICGK 262
                 4569****98 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.7e-05
   zf-H2C2_2   2 LrrHirkHtgekpyeCp..lCdkaFk 25 
                 L+ H   H g++p++C    C kaF+
  CCD23229.1 270 LKTHYLIHSGDTPFKCAwkGCTKAFN 295
                 789***************77***995 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.17
   zf-H2C2_2   3 rrHirkHtge 12 
                  rH++ H ++
  CCD23229.1 301 LRHFKCHEKK 310
                 69*****876 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.6   8.9e-05      0.32      11      38 ..     249     273 ..     245     291 .. 0.83
   2 ?   -0.5   0.1      0.36   1.3e+03       1      12 [.     298     309 ..     298     312 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.9e-05
                 -GGSS--EETTTTEE----SSTHHHHHH CS
      zf-BED  11 slkeqkavCryCgkilsrgggttnLkrH 38 
                 ++ ++k +C +Cgki sr    + Lk+H
  CCD23229.1 249 PKIKNKKQCDICGKICSRP---STLKTH 273
                 5679999***********5...777777 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.36
                 --TTSSS----G CS
      zf-BED   1 skvWkyftpvsl 12 
                 s+  ++f+++++
  CCD23229.1 298 SNMLRHFKCHEK 309
                 566788888883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2353.47
//
Query:       CCD23230.1  [L=245]
Description: hypothetical protein NDAI_0B01950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-82  274.4   0.3    5.2e-82  274.0   0.3    1.1  1  eIF-6     eIF-6 family


Domain annotation for each model (and alignments):
>> eIF-6  eIF-6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.0   0.3   2.9e-86   5.2e-82       1     195 [.       4     202 ..       4     204 .. 0.98

  Alignments for each domain:
  == domain 1  score: 274.0 bits;  conditional E-value: 2.9e-86
                 .E-BTTB--HHHH-EE-SSEEEE-TTS-HHHHHHHHHHHT..-EEEE--BTTBS-HHHH-EE-SSEEEEETT--HHHHHHHHHHHH---..EEE--SS- CS
       eIF-6   1 rlsiegsseiGvfarltnkyalvpegveeefvkaieeeLk..vevvettiagsrlvGslvvgNsngllvpstvtdeeleklkeslklev..erleeklt 95 
                 r+++e+s+eiGvf++ltn+y+lv+ g +e+f++a+e+eL+  +++ +ttiag+r++G++++gN++gllvp ++td+el++l++sl+++v  +r+ee+l+
  CCD23230.1   4 RTQFENSNEIGVFSKLTNTYCLVALGGSENFYSAFEAELGdaIPIAHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVkiQRVEERLS 102
                 789***********************8889**********99********************************************66655******** PP

                 -HHHHEEE-SSEEEE-GGGGG.GHHHHHHHHTSEEEE--BTTBS-TTTSEEE-SSEEEE-TT--HHHHHHHHHHHT-SEEE--BTTTBS-GGGTEEE-S CS
       eIF-6  96 AlGNvilaNDkvAlvhpdlsketveiiadvLgvevvrgtiagiktvGsaavvtnkgllvhpkateeeleeleellkveveagTvNrGsklvgsglvaNd 194
                 AlGNvi++ND+vAlvhpd+++et+e+i+dvLgvev+r+ti g+ +vGs+++++n+g+lvhp++t +++eel++ll+v++ agTvNrGs++vg+g+v+Nd
  CCD23230.1 103 ALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCALSNQGGLVHPQTTIQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVND 201
                 **************************************************************************************************9 PP

                 S CS
       eIF-6 195 k 195
                  
  CCD23230.1 202 Y 202
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1884.71
//
Query:       CCD23231.1  [L=439]
Description: hypothetical protein NDAI_0B01960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-54  183.2   0.0    1.1e-52  179.0   0.0    2.4  1  Actin     Actin


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.0   0.0   6.3e-57   1.1e-52       4     404 ..       3     430 ..       1     433 [. 0.96

  Alignments for each domain:
  == domain 1  score: 179.0 bits;  conditional E-value: 6.3e-57
       Actin   4 vsavVlDnGssttraGyagedaPkavipslvgkprgrkveaklyvgde..altkrpelevrspvedGvvedwdaveelwehvlkeelkvd......pee 94 
                 ++ +VlDnGs+ +++G +  + P   +  +   + g+      y+ ++  ++++++e+++r+p e G ++ w+  + +w++ l++  + d      + +
  CCD23231.1   3 STPLVLDNGSYEIKFGLSNSERPYRALNGFAVDKYGS-----AYLSNQmkKIQEVSEVTLRRPHELGQLTSWELESCIWDYCLYNPDEFDgfelggSGK 96 
                 5789***********************9999988887.....355555457779*******************************9999977888779* PP

       Actin  95 hpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgks.............................................tglvvD 148
                 + l+++ep+++ p+  +++++++fE++++ +l+ a +a    f                                                    lv+D
  CCD23231.1  97 KHLIVSEPCMTLPELSKNMDQVIFEEYEFDSLFKAPTAGYIPFGVQADdrkvlldtisgkkndddmigqsenvtistdnlkddkkkfsndyqdYELVID 195
                 **************************************9999987666899************************************************ PP

       Actin 149 sGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssknvevtprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedp 247
                 sG + t ++p ++G++  kai+++d+gG++Lt  lke+ls +                                +y+ ++e+ ++++iKe++++vs + 
  CCD23231.1 196 SGFNCTWIIPMIKGVPYYKAIKKLDIGGRFLTGLLKETLSFR--------------------------------HYDLMDETLLVNNIKEKCLFVSPTS 262
                 *****************************************8................................9************************ PP

       Actin 248 egdeeksssspeksYeLPDg....................seiklgeeRfkvpEiLFdpsligsesaleeekskllgiselivaainacdvdlrpeLla 326
                 + d+ k++++  ++Y+LPD                     +++kl  e f+vpE  F+p+++   +          gi e i +++++++  lrp L+a
  CCD23231.1 263 YFDSFKAKEETSVEYILPDIsssylgytrenkskplpegsQVVKLYDELFSVPETFFHPEISRILKP---------GIVETILESLSMIPEILRPLLVA 352
                 *9999999***********99******************99********************999999.........*********************** PP

       Actin 327 nivvtGGnsllpglteRlekelaqlaskgvkvkiiapeeerkysaWiGGSiLAslgtfqqlwvskqEYeEqGssvver 404
                 niv tGGn  lp +  Rl +el++ ++++   +i  p++e    +W     +A++++ +++ +sk+EY E+G+++  +
  CCD23231.1 353 NIVCTGGNFNLPHFAARLAAELQRQLPTDWTCRISVPKKECELFSWKSMCQFANTDSYKKTRISKEEYYEHGPDWLTK 430
                 **************************************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3122.13
//
Query:       CCD23232.1  [L=1415]
Description: hypothetical protein NDAI_0B01970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-69  233.0  43.8    8.9e-69  231.3  43.8    2.3  1  SMC_N            RecF/RecN/SMC N terminal domain
      4e-21   75.5   0.3    1.7e-20   73.5   0.0    2.3  2  SMC_hinge        SMC proteins Flexible Hinge Domain
      2e-10   41.0   1.5    1.2e-05   25.3   1.1    4.6  5  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00011   21.9   0.0    0.00025   20.7   0.0    1.6  1  AAA_29           P-loop containing region of AAA domain
    0.00044   20.1  38.6    0.00044   20.1  38.6    4.5  4  AAA_15           AAA ATPase domain
     0.0017   18.2  17.1     0.0017   18.2  17.1    5.7  4  ERM              Ezrin/radixin/moesin family
     0.0024   18.5   3.6     0.0024   18.5   3.6    9.1  9  Occludin_ELL     Occludin homology domain
     0.0046   17.6   3.4     0.0046   17.6   3.4    8.7 10  YabA             Initiation control protein YabA
  ------ inclusion threshold ------
      0.033   14.4   0.0        1.3    9.3   0.0    2.6  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
        1.8    9.1   0.0        1.8    9.1   0.0    6.6  5  ABC_tran         ABC transporter


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.3  43.8     5e-72   8.9e-69       1     219 [.     152    1399 ..     152    1400 .. 0.99

  Alignments for each domain:
  == domain 1  score: 231.3 bits;  conditional E-value: 5e-72
                  EEEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEE....EETTEE..SS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx..xx RF
       SMC_N    1 vlkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitf....dnedkk..lk 91  
                  ++++l+++nFksyag++vi+pf+++f+a+vGpNGSGKsn++d++lFv+G+r++ k+r+++lsdlihks++ +++ +++v++ f    d+++ +  + 
  CCD23232.1  152 FINKLVLNNFKSYAGEQVIGPFNTNFSAVVGPNGSGKSNVIDSMLFVFGFRAN-KMRQDRLSDLIHKSESFPNLPSCSVDVEFqyvvDKSNGSskID 247 
                  589***********************************************988.*****************************99994555442266 PP

                  SSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT..................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
       SMC_N   92 iekeevsisrrvkrkgeseykingkevtkkevsellesagiske..................................................... 135 
                   +k+++ i+r+++++++s+y+ingke +++ev++ll+++gi+ +                                                     
  CCD23232.1  248 DNKPKLIITRKAFKNNSSKYFINGKESSYTEVTKLLKEEGIDLDhkrflilqgeveniaqmkpkaeregddglleylediigtadykssiekntiev 344 
                  67778******************************************************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23232.1  345 dtlneiciekenrfeivereknslessknaalefvkkerrltlskskllqynilkeheklastlqklsvlqeeyqnestkfentqretnklednfkq 441 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23232.1  442 mnkkivsikedmknntskkrelqnkkasleekiksytrkkekasksiaqskkllknyrneietlnvdqqeresnlqsllselkkeknvleeiklslk 538 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23232.1  539 dkttdisneiaqherelepwkkqlqekkleiqvaesqisllqenqsklkdeieklkndlkcqfenkknqeeklidlkvqfsaistefdrgesecana 635 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23232.1  636 kskikdmqhvlqtqrqkvmdarsrlatvenkskvlsalhklqksgrisgfygrlgdlgvidneydiaistasarlddivvdsvecgqhcieylrknk 732 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23232.1  733 lgyarfilleklrnlilkriqtpenvkrlfdlvkpdkdifipafysvlrntlvakdlkqanrvaygatrfrvvtmdgklidisgtitgggkqtaqgl 829 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23232.1  830 mklrkkgqenidiysnddiekiekelverennfkfandtyfemeqalqrlkdrkpeleleiskclmdtdisskelestqdqlkqkitfyerhtqnkd 926 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23232.1  927 evveiehqlnllqkeyqllldstknisekidklkkrimeiggidlqmqnskvnsiiqnidiikskqkrgissmkkieneirrsekalsgaeldfktc 1023
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23232.1 1024 skemdsfsqemesverslgsidetflklenenseleieccnlkekineaeiegtkfksyeidvkdrleklnnllkhikrvikeydeqlralelrntt 1120
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23232.1 1121 tifgdegdnnsingvdrtshgggvplqdqnkvvrennmrneknsteaemeiddvadefspgipriskakllqidvqaleaeigqleeyvaitnvnid 1217
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD23232.1 1218 vleeyarrladynsrkldlnqaverrealkklldelkkkrydefmqgfgiismtlkemyqmitmggnaelelidsldpfsegvtfsvmppkkswrni 1314
                  ************************************************************************************************* PP

                  .CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEEETTEE CS
                  .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 .lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtkvengvs 219 
                   +LSgGektL++laL+fA++k+kp+ply++DeidaaLD++nv++va+++ke++knaQfivislr++m+e a++l+g++k++n+++
  CCD23232.1 1315 aNLSGGEKTLSSLALVFALHKYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELAQQLIGIYKRDNKTK 1399
                  *******************************************************************************999876 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   9.5e-24   1.7e-20       2     117 .]     683     796 ..     682     796 .. 0.96
   2 ?   -4.2   0.0        10   1.8e+04      35      51 ..    1240    1256 ..    1238    1263 .. 0.86

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 9.5e-24
   SMC_hinge   2 kgvlGrladlievdegyekAveaalgnrlqalvvedeetakkiieflkkknagratflpldrikqknkadgandknsgavplidlvevdde.lrkalry 99 
                 +g++Grl+dl  +d++y++A+++a  +rl+ +vv++ e+ + +ie+l+k+++g a f+ l++++    +  ++++  ++++l+dlv+ d+  + +a++ 
  CCD23232.1 683 SGFYGRLGDLGVIDNEYDIAISTA-SARLDDIVVDSVECGQHCIEYLRKNKLGYARFILLEKLRNLILKRIQTPE--NVKRLFDLVKPDKDiFIPAFYS 778
                 699******************776.789*******************************************9998..6********************* PP

   SMC_hinge 100 llgdtlvvdsldeAeela 117
                 +l++tlv+++l++A+++a
  CCD23232.1 779 VLRNTLVAKDLKQANRVA 796
                 **************9985 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 10
   SMC_hinge   35 vedeetakkiieflkkk 51  
                  ve  e+ kk+++ lkkk
  CCD23232.1 1240 VERREALKKLLDELKKK 1256
                  88899999999999998 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   1.1   6.8e-09   1.2e-05       1     190 [.     177     342 ..     177     388 .. 0.66
   2 ?   -2.7   2.9       2.2   3.9e+03      83     124 ..     469     511 ..     343     556 .. 0.58
   3 ?   -1.8   2.7       1.2   2.2e+03      89     153 ..     485     550 ..     404     628 .. 0.57
   4 ?   -1.1   0.3       0.7   1.3e+03      48     109 ..     876     927 ..     850    1024 .. 0.72
   5 !   23.7   0.0     2e-08   3.7e-05     226     296 ..    1306    1376 ..    1210    1376 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 6.8e-09
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqveeklssvetllesgll 99 
                 + +++GpNgsGKSn++d + +++++     + +  ++++ +  +  s+++++ p+ ++  e+  ++++++  + + + + + +                
  CCD23232.1 177 FSAVVGPNGSGKSNVIDSMLFVFGF-----RANKMRQDRLSDLIHKSESFPNLPSCSVDVEFQYVVDKSNGSSKIDDNKPKLI---------------- 254
                 6789******************996.....44444445555556666777777777777777744444444444444444444................ PP

      AAA_21 100 ldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrke.rigllnifadyfgfakekrllqrlvr 190
                     ++++  + n+ ++ i g +s+  + +++++e+ ++   k+++ +  + + +++++ +   e + gll++  d +g a+ k  +++ + 
  CCD23232.1 255 ----ITRKAFKNNSSKYFINGKESSYTEVTKLLKEEGIDLDHKRFLILQGEVENIAQMKPKAEREgDDGLLEYLEDIIGTADYKSSIEKNTI 342
                 ....6666666666666666666666666666666666666666666666666666666666666666666666666666666666655555 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.2
      AAA_21  83 v.eeklssvetllesgllldkrsleeedvfnpeargirggvsv 124
                   eek++s+ +++e+   +  +s++  +++ +e ++  ++ ++
  CCD23232.1 469 SlEEKIKSYTRKKEKASKSIAQSKKLLKNYRNEIETLNVDQQE 511
                 2334444444444443333333333333333333333333333 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.2
      AAA_21  89 svetllesgllldkrsleeedvfnpeargir.ggvsvfslkelsvsepndlqfgkaltditsraws 153
                 s+   +++ ll+++r+++e+ ++++++r++    + ++  ke++v e+++l  ++ +tdi++++++
  CCD23232.1 485 SKSIAQSKKLLKNYRNEIETLNVDQQERESNlQSLLSELKKEKNVLEEIKLSLKDKTTDISNEIAQ 550
                 222333344444444444444444443333202333444444444444444444444444444444 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.7
      AAA_21  48 lldlydpeipfefeieeflsqgvryryglrlersqveeklssvetllesgllldkrsleeed 109
                 l++l+d +++ e+ei++ l++    + +l+  ++q+          +++ ++  +   ++  
  CCD23232.1 876 LQRLKDRKPELELEISKCLMDTDISSKELESTQDQL----------KQKITFYERHTQNKDE 927
                 566777788888888888888888888888888888..........3333333333333333 PP

  == domain 5  score: 23.7 bits;  conditional E-value: 2e-08
      AAA_21  226 ngdgqelparelSdGtkrll..alltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296 
                  +++  ++++++lS G k l   al+ al+   +  +l++ DE+++ L+ + ++ ++  +ke ++ +aQ+i+ +
  CCD23232.1 1306 PPKKSWRNIANLSGGEKTLSslALVFALHKYKPT-PLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVIS 1376
                  555667899**********656999999988888.************************99999.9****976 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.4e-07   0.00025       3      46 ..     155     199 ..     153     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.4e-07
      AAA_29   3 rlqlvNWgtfdg.htieidlkgatlltGpsGsGKSTllDAiqalL 46 
                 +l l N  ++ g ++i     ++  ++Gp+GsGKS ++D++ +++
  CCD23232.1 155 KLVLNNFKSYAGeQVIGPFNTNFSAVVGPNGSGKSNVIDSMLFVF 199
                 67889999999977776655669******************9886 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1  38.6   2.4e-07   0.00044       3     280 ..     153     469 ..     152     483 .. 0.66
   2 ?  -15.0  46.6        10   1.8e+04      67     262 ..     441     633 ..     431     673 .. 0.41
   3 ?  -13.7  37.7        10   1.8e+04      54     287 ..     861    1087 ..     810    1149 .. 0.41
   4 ?   -7.7  18.6        10   1.8e+04      39     350 ..     981    1365 ..     980    1376 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.4e-07
      AAA_15   3 IkkikikNFRslkdvei..dlseeltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvef..............ae 85 
                 I+k+ ++NF+s+   ++  +++ +++ ++G+N+sGKS++++ + + +      nk+  +  ++ ++++e+  +  +  +dvef              ++
  CCD23232.1 153 INKLVLNNFKSYAGEQVigPFNTNFSAVVGPNGSGKSNVIDSMLFVFGFR--ANKMRQDRLSDLIHKSESFPNLPSCSVDVEFqyvvdksngsskidDN 249
                 999*********985554599999*******************9999965..44555666666667776667777788888888899888887765444 PP

      AAA_15  86 kekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkks........................kkelpkekeeklekeke 160
                 k+k ++  k+ k++ +k+  +  +  +++  k++k++ ++l+++++     +ve++ +                         ++  +ek+  +    +
  CCD23232.1 250 KPKLIITRKAFKNNSSKYFINGKESSYTEVTKLLKEEGIDLDHKRFLILQGEVENIAQmkpkaeregddglleylediigtaDYKSSIEKNTIEVDTLN 348
                 488888888888888888888888889999999999999999999988888888888877888888888888888888888866666677777777888 PP

      AAA_15 161 elkidkedlkklikkleeslkkee........elknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekl..eeelteklkeiqekl 249
                 e+ i+ke+ +++ ++ ++sl++++        +   +  s++++l+++  k + +   + +k s+l + +++ + +  ++ +  + +l++++k++++k+
  CCD23232.1 349 EICIEKENRFEIVEREKNSLESSKnaalefvkKERRLTLSKSKLLQYNILKEHEKLASTLQKLSVLQEEYQNESTKFENT-QreTNKLEDNFKQMNKKI 446
                 88888888888888888888888866665554333333444444444444444444444444444444444444432111.123444455555555555 PP

      AAA_15 250 keidkklaeelkkilkkkidkikkfnykgkk 280
                   i+++++++++        k   +++k+++
  CCD23232.1 447 VSIKEDMKNNTS--------KKRELQNKKAS 469
                 555555555554........22222222222 PP

  == domain 2  score: -15.0 bits;  conditional E-value: 10
      AAA_15  67 ifeniseskdikIdvefaekekakeyektlkskekkkadlllkkkesdlkktikdkk..lklkknelsdekisvekkkskkelpkekeeklekekeelk 163
                 +++++  s++ + + +    +++k +++ +k + ++k +  +++k+++ +k i + k  lk++ ne+ + +++ ++++s+ +   ++ +k+++  ee+k
  CCD23232.1 441 QMNKKIVSIKEDMKNN----TSKKRELQNKKASLEEKIK-SYTRKKEKASKSIAQSKklLKNYRNEIETLNVDQQERESNLQSLLSELKKEKNVLEEIK 534
                 2222222222222222....2333333333333333333.33333333333333333013445555555555555555555555555555555555555 PP

      AAA_15 164 id.kedlkklikkleeslkkeeelknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelk 261
                 +  k++++++++++ +   + e      k++++k l i+   +  + + e++s+l++++ + +++ + q + +++++ekl +++  ++ i+ +++  ++
  CCD23232.1 535 LSlKDKTTDISNEIAQHERELE---PWKKQLQEKKLEIQVAESQISLLQENQSKLKDEIEKLKNDLKCQFENKKNQEEKLIDLKVQFSAISTEFDRGES 630
                 5566666666664444443333...33333333333333333333333333333333333333332333333444444444444444444444444444 PP

      AAA_15 262 ..k 262
                    
  CCD23232.1 631 ecA 633
                 332 PP

  == domain 3  score: -13.7 bits;  conditional E-value: 10
      AAA_15   54 n....kkvikiekedleifeniseskdikIdvefaekekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkkskke 146 
                  n    +++ ++ ++ l+  ++++++ +++I ++                                +++ i +k+l+  +++l++++  +e   ++k+
  CCD23232.1  861 NfkfaNDTYFEMEQALQRLKDRKPELELEISKCL-------------------------------MDTDISSKELESTQDQLKQKITFYERHTQNKD 926 
                  0222333444444444444444444444444444...............................34444444444444444444444444444444 PP

      AAA_15  147 lpkekeeklekekeelkidkedlkklikkleeslkkee................elknvlksaiiklllisakRnvsdedsekkssllgklkekile 227 
                    +e e+ l++ ++e+++  +++k++++k+ + +k                    ++n+   ++++ + is+ +++++e   +++ l g+ ++ +  
  CCD23232.1  927 EVVEIEHQLNLLQKEYQLLLDSTKNISEKIDKLKKRIMeiggidlqmqnskvnsIIQNIDIIKSKQKRGISSMKKIENEIRRSEKALSGAELDFKTC 1023
                  4444455555555555555555555555333333322244444444333322222222222222223333333333333333333333333333333 PP

      AAA_15  228 ealqekleeelteklkeiqeklkeidkklaeelk......kilkkkidkikkfnykgkkneeieik 287 
                  ++  +++  +  e  ++ + +++e+  kl++e +      ++lk+ki++   ++  ++k+ ei++k
  CCD23232.1 1024 SKEMDSF-SQEMESVERSLGSIDETFLKLENENSeleiecCNLKEKINEA-EIEGTKFKSYEIDVK 1087
                  3222222.122333333333333333333222223333334444444442.222222222222222 PP

  == domain 4  score: -7.7 bits;  conditional E-value: 10
      AAA_15   39 ilealdlFlnnkekknkkvikiekedleifeniseskdikIdvefaekekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdek 135 
                  i++ +d++++++++  +  +k+ +++++ +e+       ++d++               ++ + +++ +++  e++l ++ +++    ++n      
  CCD23232.1  981 IIQNIDIIKSKQKRGIS-SMKKIENEIRRSEK--ALSGAELDFKT------------CSKEMDSFSQ-EMESVERSLGSIDETFLKLENENSELEIE 1061
                  66666666665533332.22222222222222..22223333333............2222222222.55666666666666665544433333333 PP

      AAA_15  136 isvekkkskkelpkekeeklekekeelkid..kedlkklikkleeslkkee............................................el 186 
                  +++ k+k +      + e  + +++e++++   e+l++l+k ++  +k+++                                            + 
  CCD23232.1 1062 CCNLKEKINE----AEIEGTKFKSYEIDVKdrLEKLNNLLKHIKRVIKEYDeqlralelrntttifgdegdnnsingvdrtshgggvplqdqnkvVR 1154
                  3333333222....22233444455666665577888888888888888888788887888888888888888888888888877777777777655 PP

      AAA_15  187 knvlksaiiklllisakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelk................kilkkk 267 
                  +n++ ++   ++  ++  +v de+s  +  +  +++ +i  +al+ + + +l+e    ++ +++ ++++     +                + lkk 
  CCD23232.1 1155 ENNMRNEKNSTEAEMEIDDVADEFSPGIPRISKAKLLQIDVQALEAE-IGQLEEYVAITNVNIDVLEEYARRL-AdynsrkldlnqaverrEALKKL 1249
                  66666666666666666666666665555544444444333333222.3333333333333333333333222.13555666666666677889999 PP

      AAA_15  268 idkikkfnykgkkneeieik......................................ddeelplnknGsGvqrllllillileaekkdekeeknvi 326 
                  +d++kk  y ++ + ++ i+                                       +   ++++ + G + l +l+l  +  + k     ++ +
  CCD23232.1 1250 LDELKKKRYDEFMQGFGIISmtlkemyqmitmggnaelelidsldpfsegvtfsvmppKKSWRNIANLSGGEKTLSSLALVFALHKYK-----PTPL 1341
                  9999999999999999999888888888888887777777777777777777777777777777777777777766666544444433.....7777 PP

      AAA_15  327 lliEEPEahLHpqaqkvlikllke 350 
                  ++++E++a L   + +++++++ke
  CCD23232.1 1342 YVMDEIDAALDFRNVSIVANYIKE 1365
                  777777777766666666666655 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2  27.6    0.0021       3.9      10     134 ..     421     545 ..     414     551 .. 0.90
   2 !   18.2  17.1   9.6e-07    0.0017       7     141 ..     534     668 ..     530     733 .. 0.84
   3 ?   -0.3  10.8      0.42   7.6e+02      21     129 ..     848     959 ..     842     985 .. 0.53
   4 !   10.9  15.3   0.00017       0.3      10     201 ..     995    1205 ..     986    1260 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0021
         ERM  10 leerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerL 108
                    + ++ q e++k +++ ++ ++++   +e ++    ++++L++k+a +ee+i+   +++ek  ++ ++ ++ l+++  e+++l  +++++e++ + L
  CCD23232.1 421 ESTKFENTQRETNKLEDNFKQMNKKIVSIKEDMKNNTSKKRELQNKKASLEEKIKSYTRKKEKASKSIAQSKKLLKNYRNEIETLNVDQQERESNLQSL 519
                 456788999999*************************************************************************************** PP

         ERM 109 keeleeareaeeeakekllealstps 134
                  +el++ ++ +ee k  l++ ++  s
  CCD23232.1 520 LSELKKEKNVLEEIKLSLKDKTTDIS 545
                 *************9999999888765 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 9.6e-07
         ERM   7 kreleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeea 105
                 k  l+++ + + +e+++ +++L+  +++ ++ + + ++ae +  lL++++++++ ei++lk + + + e+k++ e+kl + + +++ +  e +r e+e 
  CCD23232.1 534 KLSLKDKTTDISNEIAQHERELEPWKKQLQEKKLEIQVAESQISLLQENQSKLKDEIEKLKNDLKCQFENKKNQEEKLIDLKVQFSAISTEFDRGESEC 632
                 567899999****************************************************************************************** PP

         ERM 106 erLkeeleeareaeeeakekllealstpskseseen 141
                  + k++++ +++ ++ +++k+++a s+ ++ e++++
  CCD23232.1 633 ANAKSKIKDMQHVLQTQRQKVMDARSRLATVENKSK 668
                 ************************999964444333 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.42
         ERM  21 aekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlke....saekeeeekeklerklreaeleaarleeeserkeeeaerLkeeleea 115
                 +ek +++L e e+  +  +    ++e++ ++L+ ++ e+e ei++  +    s+++ e+++++l++k++ +e+++++  e +e  e++ + L++e +  
  CCD23232.1 848 IEKIEKELVERENNFKFANDTYFEMEQALQRLKDRKPELELEISKCLMdtdiSSKELESTQDQLKQKITFYERHTQNKDEVVEI-EHQLNLLQKEYQLL 945
                 555555555555555555555555666666666666666655555433000033344445555555555555555554444443.55555566655555 PP

         ERM 116 reaeeeakekllea 129
                  ++ ++ +ek+ ++
  CCD23232.1 946 LDSTKNISEKIDKL 959
                 55554444444433 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00017
         ERM   10 leerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeae 106 
                      +k++++e+++ ++aL+ +e   +   +++    +e+e  e+    + e   +l+ ++++ e e  +l++k++eae e +++++ +   +   e
  CCD23232.1  995 GISSMKKIENEIRRSEKALSGAELDFKTCSKEMDSFSQEMESVERSLGSIDETFLKLENENSELEIECCNLKEKINEAEIEGTKFKSYEIDVKDRLE 1091
                  55689**********************************************************************************99999999** PP

         ERM  107 rLkeeleeareaeeeakekllealstpsks..........................eseenveeseteeeeensee..................... 156 
                  +L + l+++++  +e  e+l+++  +++++                          +   +++   ++++ +++++                     
  CCD23232.1 1092 KLNNLLKHIKRVIKEYDEQLRALELRNTTTifgdegdnnsingvdrtshgggvplqD---QNKVVRENNMRNEKNSteaemeiddvadefspgipri 1185
                  ********************9999999777888888888888888888888866541...2222222222223333011233333334444444444 PP

         ERM  157 .esaeletdeveklsleieeeRvtylekskrlqeqLkeLkseleql 201 
                   +                           k lq   ++L++e+ ql
  CCD23232.1 1186 sK--------------------------AKLLQIDVQALEAEIGQL 1205
                  40..........................444444444444444333 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.6       1.4   2.4e+03      50      89 ..     353     392 ..     331     401 .. 0.77
   2 ?   -1.5  15.8       2.3   4.2e+03      14      81 ..     415     483 ..     398     499 .. 0.69
   3 ?   -5.0  11.2        10   1.8e+04      32      94 ..     461     525 ..     451     532 .. 0.60
   4 ?   -3.1   6.5       7.5   1.3e+04      28      93 ..     499     566 ..     491     574 .. 0.65
   5 ?   -6.7  12.7        10   1.8e+04      28      71 ..     580     606 ..     535     678 .. 0.57
   6 ?   -2.1   9.6       3.7   6.6e+03      16      94 ..     861     940 ..     847     967 .. 0.71
   7 ?    0.9   0.9      0.41   7.4e+02      22      70 ..     940     989 ..     939    1011 .. 0.65
   8 !   18.5   3.6   1.4e-06    0.0024      21     101 .]    1024    1109 ..    1005    1109 .. 0.69
   9 ?    1.1   0.4      0.36   6.5e+02      15      51 ..    1220    1256 ..    1189    1277 .. 0.58

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.4
  Occludin_ELL  50 egskeykkieeeilqeykklkk.dpeyqekkkrceyLkekL 89 
                   e++++++ +e+e  +++++ k+   e+ +k++r++  k+kL
    CCD23232.1 353 EKENRFEIVERE-KNSLESSKNaALEFVKKERRLTLSKSKL 392
                   455677777888.8999999988889999999999988888 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.3
  Occludin_ELL  14 kaeFnkeYkeYkelhaeleevskkfseLerelkelkegskeykkieeeilqeykklkk.dpeyqekkkr 81 
                   ++e+++e +++ + ++e ++++++f+++++++ + ke+ k+ ++ ++e++++ ++l++  ++y +kk++
    CCD23232.1 415 QEEYQNESTKFENTQRETNKLEDNFKQMNKKIVSIKEDMKNNTSKKRELQNKKASLEEkIKSYTRKKEK 483
                   567777777788888888888888888887777777777766666666666666665534556666655 PP

  == domain 3  score: -5.0 bits;  conditional E-value: 10
  Occludin_ELL  32 eevskkfseLerelkelkegskeykkieeeilqeykklkk..dpeyqekkkrceyLkekLshiKk 94 
                   +e+++k + Le+++k++++++++ +k +++  + +k++++  ++   ++++r   L++ Ls +Kk
    CCD23232.1 461 RELQNKKASLEEKIKSYTRKKEKASKSIAQSKKLLKNYRNeiETLNVDQQERESNLQSLLSELKK 525
                   55666667777777777777774444444434445555542233344566677777777777776 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 7.5
  Occludin_ELL  28 haeleevskkfseLerelkelkegskeykkieeeilqeykklkk..dpeyqekkkrceyLkekLshiK 93 
                    +e+e+++ + +e e++l++l  + k++k++ eei  ++k+++   ++e  ++++++e  k++L+  K
    CCD23232.1 499 RNEIETLNVDQQERESNLQSLLSELKKEKNVLEEIKLSLKDKTTdiSNEIAQHERELEPWKKQLQEKK 566
                   45666666666666677777777777777777777777777776555666666666666666666555 PP

  == domain 5  score: -6.7 bits;  conditional E-value: 10
  Occludin_ELL  28 haeleevskkfseLerelkelkegskeykkieeeilqeykklkk 71 
                   +++ +++++++++L+++lk + e++k                 +
    CCD23232.1 580 QENQSKLKDEIEKLKNDLKCQFENKK-----------------N 606
                   22333333333333333333322222.................2 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 3.7
  Occludin_ELL  16 eFnkeYkeYkelhaeleevskkfseLerelkelkegsk.eykkieeeilqeykklkk.dpeyqekkkrceyLkekLshiKk 94 
                   +F+   ++Y e+++ l+ ++++  eLe e+++   +++   k++e+  ++++k++    +++ ++k ++ +++++L+ + k
    CCD23232.1 861 NFKFANDTYFEMEQALQRLKDRKPELELEISKCLMDTDiSSKELEST-QDQLKQKITfYERHTQNKDEVVEIEHQLNLLQK 940
                   56666678888888888888888888877777776666555555555.666666555567777777777777777777654 PP

  == domain 7  score: 0.9 bits;  conditional E-value: 0.41
  Occludin_ELL  22 keYkelhaeleevskkfseLerelkelkegskeykki.eeeilqeykklk 70 
                   keY+ l ++ +++s+k+ +L++++ e    + ++++  +++i+q+   +k
    CCD23232.1 940 KEYQLLLDSTKNISEKIDKLKKRIMEIGGIDLQMQNSkVNSIIQNIDIIK 989
                   58888888888889999999888887766555444331344555554444 PP

  == domain 8  score: 18.5 bits;  conditional E-value: 1.4e-06
  Occludin_ELL   21 YkeYkelhaeleevskkfseLerelkelkegsk....eykkieeeilq.eykklkkdpeyqekkkrceyLkekLshiKklikeydk 101 
                     ke  +  +e+e+v++ +  +++   +l+++++    e  +++e+i + e +  k ++   + k r+e+L++ L+hiK+ ikeyd+
    CCD23232.1 1024 SKEMDSFSQEMESVERSLGSIDETFLKLENENSeleiECCNLKEKINEaEIEGTKFKSYEIDVKDRLEKLNNLLKHIKRVIKEYDE 1109
                    444555555555555555555555555555444455666666777655156666656677899*********************95 PP

  == domain 9  score: 1.1 bits;  conditional E-value: 0.36
  Occludin_ELL   15 aeFnkeYkeYkelhaeleevskkfseLerelkelkeg 51  
                    +e+ +  + Y++ + +l+++ ++ + L++ l+elk++
    CCD23232.1 1220 EEYARRLADYNSRKLDLNQAVERREALKKLLDELKKK 1256
                    3344444444444444444444444444444444433 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   3.2       4.3   7.7e+03      24      62 ..     368     410 ..     349     434 .. 0.48
   2 !    9.6  11.3    0.0008       1.4       8      75 ..     430     497 ..     424     502 .. 0.91
   3 ?   -1.4   2.2         2   3.6e+03      10      51 ..     520     561 ..     497     568 .. 0.40
   4 ?   -1.4  12.3         2   3.6e+03      10      66 ..     555     611 ..     540     663 .. 0.79
   5 ?   -2.1   0.1       3.5   6.2e+03       8      41 ..     637     670 ..     630     679 .. 0.66
   6 ?   -3.4   7.2       8.7   1.6e+04      12      74 ..     871     939 ..     847     943 .. 0.55
   7 ?   -0.5   5.0       1.1   1.9e+03      20      53 ..     931     972 ..     914    1013 .. 0.46
   8 !   17.6   3.4   2.5e-06    0.0046       4      77 ..    1021    1094 ..    1018    1107 .. 0.84
   9 ?    0.4   0.1      0.59   1.1e+03      13      45 ..    1086    1118 ..    1077    1123 .. 0.56
  10 ?   -0.2   1.1      0.87   1.6e+03       4      56 ..    1196    1254 ..    1189    1278 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.3
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH....XXXXXXXXXX CS
        YabA  24 leelkeelaelleenaeLeleneklrerl....eeeekkekek 62 
                 le+ k++  e ++++++L+l ++kl +      +e+ +++ +k
  CCD23232.1 368 LESSKNAALEFVKKERRLTLSKSKLLQYNilkeHEKLASTLQK 410
                 5555555555555555555555554443323221111111111 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0008
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA   8 dkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegkenLar 75 
                 ++ ++le++++++++++ ++ke++++ + + +eL+  + +l e++++ ++k+++ +k++ ++k+ L++
  CCD23232.1 430 RETNKLEDNFKQMNKKIVSIKEDMKNNTSKKRELQNKKASLEEKIKSYTRKKEKASKSIAQSKKLLKN 497
                 56789****************************************99999999999999999998876 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  10 leeleeqleelleeleelkeelaelleenaeLeleneklrer 51 
                 l+el+++ + l e   +lk++++++ +e a+ e e e  +++
  CCD23232.1 520 LSELKKEKNVLEEIKLSLKDKTTDISNEIAQHERELEPWKKQ 561
                 222222222222222223333333333333333333333333 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXX CS
        YabA  10 leeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkel 66 
                 le  ++ql+e + e++  +++++ l e+ ++L+ e ekl++ l+ + +++k+++++l
  CCD23232.1 555 LEPWKKQLQEKKLEIQVAESQISLLQENQSKLKDEIEKLKNDLKCQFENKKNQEEKL 611
                 455567777888888888888888888888999999999999966666666665554 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   8 dkleeleeqleelleeleelkeelaelleenaeL 41 
                 +k++++++ l++  +++ + +++la++ ++ + L
  CCD23232.1 637 SKIKDMQHVLQTQRQKVMDARSRLATVENKSKVL 670
                 4566677777777777777777776666665555 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 8.7
                 HHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHH..XXXXXXXXXXXXXXXXXXXXXX CS
        YabA  12 eleeqleelleeleelkeelaellee....naeLeleneklrerl..eeeekkekekkkelsegkenLa 74 
                 e+e+ l++l+++  el+ e++++l +     +eLe  +++l++++   e+++++k++  e+++  + L+
  CCD23232.1 871 EMEQALQRLKDRKPELELEISKCLMDtdisSKELESTQDQLKQKItfYERHTQNKDEVVEIEHQLNLLQ 939
                 566666666666666666666555441111355666688888888443333444444444444444444 PP

  == domain 7  score: -0.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH........X CS
        YabA  20 lleeleelkeelaelleenaeLeleneklrerl........e 53 
                 + ++l+ l++e + ll+  ++++   +kl++r+        +
  CCD23232.1 931 IEHQLNLLQKEYQLLLDSTKNISEKIDKLKKRImeiggidlQ 972
                 334444444444444444444444444444443333222220 PP

  == domain 8  score: 17.6 bits;  conditional E-value: 2.5e-06
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA    4 kelfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegkenLarlY 77  
                  k   ++++++++++e++ ++l+++ e++ +l +en+eLe+e  +l+e+++e+e + ++ k+   + k+ L++l 
  CCD23232.1 1021 KTCSKEMDSFSQEMESVERSLGSIDETFLKLENENSELEIECCNLKEKINEAEIEGTKFKSYEIDVKDRLEKLN 1094
                  5567899******************************************8777777777776667777777764 PP

  == domain 9  score: 0.4 bits;  conditional E-value: 0.59
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA   13 leeqleelleeleelkeelaelleenaeLelen 45  
                  ++++le+l++ l+++k+ ++e  e+ ++Lel n
  CCD23232.1 1086 VKDRLEKLNNLLKHIKRVIKEYDEQLRALELRN 1118
                  344455555555555555555555555555554 PP

  == domain 10  score: -0.2 bits;  conditional E-value: 0.87
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHH.....HHHHHHHHXXXX CS
        YabA    4 kelfdkleeleeqleelleeleelkeelaelleenae.Lele.....neklrerleeee 56  
                  + l +++ +lee ++ ++ +++ l+e   +l + n++ L l+      e l+++l+e +
  CCD23232.1 1196 QALEAEIGQLEEYVAITNVNIDVLEEYARRLADYNSRkLDLNqaverREALKKLLDELK 1254
                  55666777777777777777777777777777776532544433333344444443222 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.14   2.4e+02      24      86 ..    1004    1061 ..     990    1064 .. 0.78
   2 ?    9.3   0.0   0.00074       1.3      28      52 ..    1312    1335 ..    1304    1356 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.14
     SbcCD_C   24 kelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatlle 86  
                   e++rs ++lSG e  f +    + ++++ ++s e   +  +l  +DE F kl +e+++  +e
  CCD23232.1 1004 NEIRRSEKALSGAELDFKTCSKEMDSFSQEMESVE---R--SLGSIDETFLKLENENSELEIE 1061
                  45889999999999999888888888888888863...3..45568******99999876555 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00074
     SbcCD_C   28 rssgtlSGGekqflaylalaaalaa 52  
                  r++++lSGGek +l +lal++al+ 
  CCD23232.1 1312 RNIANLSGGEK-TLSSLALVFALHK 1335
                  7899*******.**********975 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00098       1.8      15      31 ..     179     195 ..     174     282 .. 0.91
   2 ?  -10.0  14.3        10   1.8e+04      25      80 ..     406     490 ..     401     537 .. 0.57
   3 ?   -1.8   4.7       2.3   4.1e+03      47     118 ..     574     654 ..     553     680 .. 0.50
   4 ?   -4.2   6.7        10   1.8e+04      46     107 ..     845     950 ..     804    1032 .. 0.60
   5 ?    5.6   0.0     0.012        21      85     134 ..    1258    1346 ..    1148    1349 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00098
                 EEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkll 31 
                 a+vG+nG+GKS ++  +
  CCD23232.1 179 AVVGPNGSGKSNVIDSM 195
                 89*********999876 PP

  == domain 2  score: -10.0 bits;  conditional E-value: 10
                 HHHHHHHTTSS--SEEEEEETTCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH..........................H CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx..........................x RF
    ABC_tran  25 StLlkllagllkpteGeilldgkdlke....qeleslrkeigvlpqepqlfpeltvren..........................e 80 
                 StL kl   +++ ++++ ++++++ ++    ++ ++++k+i  ++++ + +  +  re                           +
  CCD23232.1 406 STLQKLSVLQEEYQNESTKFENTQRETnkleDNFKQMNKKIVSIKEDMKNNTSK-KRELqnkkasleekiksytrkkekasksiaQ 490
                 666665555555566666666555554558889999999999999993333322.2222334667777776555544444322221 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.3
                 CEGGG..B-HHHCCHCEEEE-SS.--S-TTSBHHHH................................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS- CS
                 xxxxx..xxxxxxxxxxxxxxxx.xxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  47 kdlke..qeleslrkeigvlpqe.pqlfpeltvren................................esdeeiekalsklglkelkdtvvksspssLS 110
                  +++   ++ ++l+ ei+ l+ + ++ f++++++e+                                                           +++ 
  CCD23232.1 574 SQISLlqENQSKLKDEIEKLKNDlKCQFENKKNQEEklidlkvqfsaistefdrgesecanakskikdM--------------------------QHVL 646
                 222223355666666666666665555555555555788444444444444444444444333333320..........................3333 PP

                 HHHHHHHH CS
                 xxxxxxxx RF
    ABC_tran 111 gGqkqrva 118
                 + q+q+v+
  CCD23232.1 647 QTQRQKVM 654
                 44444443 PP

  == domain 4  score: -4.2 bits;  conditional E-value: 10
                 TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH............................................HHHTCHHHHHHHSTTGGTTCB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  46 gkdlkeqeleslrkeigvlpqepqlfpeltvren............................................esdeeiekalsklglkelkdt 100
                 ++d++++e+e +++e  + + +++ f+  ++ ++                                            + ++e+ ++ ++l+l +++ +
  CCD23232.1 845 NDDIEKIEKELVERENNFKFANDTYFEMEQALQRlkdrkpeleleiskclmdtdisskelestqdqlkqkitfyerhtQNKDEVVEIEHQLNLLQKEYQ 943
                 555555555555555555555555554444444445555555555555555555444444444443333333333355444445555555555554444 PP

                 GESTTSG CS
                 xxxxxxx RF
    ABC_tran 101 vvkssps 107
                  + +s++
  CCD23232.1 944 LLLDSTK 950
                 4444444 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.012
                  HHHHHHHSTTGG...................................TTCBGESTTSGGS-HHHHHHHHHHHHHHHT....SSEEEEES CS
                  xxxxxxxxxxxx...................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxx RF
    ABC_tran   85 iekalsklglke...................................lkdtvvksspssLSgGqkqrvalarallkk....pkllllDE 134 
                   +++++ +g++                                    ++ ++  ++ ++LSgG+k   +la +++ +     +l+++DE
  CCD23232.1 1258 YDEFMQGFGIISmtlkemyqmitmggnaelelidsldpfsegvtfsvMPPKKSWRNIANLSGGEKTLSSLALVFALHkykpTPLYVMDE 1346
                  333333333333555555555555556666666666666666666664444444777*********99999887644111145666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3193  (0.178091); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                       193  (0.0107647); expected 17.9 (0.001)
Passed Fwd filter:                        98  (0.005466); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 2.83u 0.34s 00:00:03.17 Elapsed: 00:00:00.71
# Mc/sec: 6009.14
//
Query:       CCD23233.1  [L=2959]
Description: hypothetical protein NDAI_0B01980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2959 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.20u 0.28s 00:00:01.48 Elapsed: 00:00:00.49
# Mc/sec: 18258.98
//
Query:       CCD23234.1  [L=588]
Description: hypothetical protein NDAI_0B01990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-30  106.2   0.0    2.9e-30  105.7   0.0    1.2  1  Aminotran_1_2  Aminotransferase class I and II
  ------ inclusion threshold ------
       0.53   10.5   2.9        3.4    7.9   1.0    2.3  2  Ig_GlcNase     Exo-beta-D-glucosaminidase Ig-fold domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.0   3.2e-34   2.9e-30      29     352 ..     205     569 ..     182     571 .. 0.81

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 3.2e-34
                    H.HHHHHTSTTST-BTTHHHHHHHHHHHHHC.TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEEEEEEB CS
  Aminotran_1_2  29 e.galaggtlneygpidglpeleealakflg.rseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggevvrypl 122
                        + gg++  y+ ++g +  ++++a f+  r+ + +  +e+  ++  ++  +  +l  l+   p++ +l+p p y+ y+  l l+ +   +y l
     CCD23234.1 205 LlLSEIGGSVGAYSASQGVYGIRKTVANFITeRDGGEPAYPEDIFLTVWCFRCCCYLLSILC-QGPKTGVLIPIPQYPLYTATLALNNSHALPYYL 299
                    356678999**********************9555555556655555555555556666667.5799***************************** PP

                    EETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH..........HGGST CS
  Aminotran_1_2 123 yseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavat..........ranve 208
                    +++ +++ + +++ee +++a e+ + + v++v +p NPtG+v+t+e +e + ++a ky+++++ De+Y++   +  ++++           +    
     CCD23234.1 300 DEKSGWSTNPKEIEEVVQDAMERAINPSVLVVINPGNPTGAVLTEESIEHIFEIAAKYGIVVIADEVYQENIADGVKFYSMkkvlrklqksH---- 391
                    **************************************************************************99***9999975554443.... PP

                    TSTT.......EEEEEESSSTT.SSGGG-EEE..EEE.EHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH........HHHHHHHHHHHHH CS
  Aminotran_1_2 209 eepn.......llivgslsKaf.GlaGeRvGy..ilg.naavvsqlrklsrpflsssllqaavaaalsdallkqs........eleemrqrlqkrr 285
                               l+ + s sK   G  G R Gy  ++g + +v++ + kl++  l + ++ +a++  +  +++k +        e    +++l  r+
     CCD23234.1 392 ---PgkfdnvqLASLHSTSKGVsGECGQRGGYmeLIGfTHEVRKVILKLASISLCPVVTGQALVDLMVSPPKKGDasyeqdqaERRHIKSELSIRA 484
                    ...33555566**********9899*******55477899***************99999998888888888777787633222222333333345 PP

                    HHHHHHHHHS.TEEEECCSCSSEEEEEETHH............CHHHHHHH.......HHHTCTEEEEEGGGGTS...TTEEEEEC.TTS- CS
  Aminotran_1_2 286 kelrdeLael.glkvlasqsgmflltdlsae............takelskk.......Lleevgvyvtpgtsftv...pgrlRitv.Aglt 352
                     +l++ +  l g+++ ++q++m+l+  l+              t              Ll+  g+  +pg+ f+    + +lR t+ A +t
     CCD23234.1 485 SQLYETFVGLeGIECQKPQGAMYLFPKLDLPfkavqeaqhlemT------PdefycksLLDATGICTVPGSGFGQepgTYHLRTTFlAPGT 569
                    5555555555*******************997666655555554......04445558****************99777799999977666 PP

>> Ig_GlcNase  Exo-beta-D-glucosaminidase Ig-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.0   0.00038       3.4       6      40 ..      18      52 ..      13      69 .. 0.74
   2 ?    1.8   0.0      0.03   2.7e+02      15      49 ..     109     148 ..      94     168 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00038
  Ig_GlcNase  6 vtkyadytaLnkLpkakvsvtakkkeetkvtvtLe 40
                +t++a++++Lnk+++ + s++a+ +++++ +++  
  CCD23234.1 18 TTNFANLKQLNKMATCTYSIKANVSNSNSNNIKTI 52
                579******************99866554444433 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.03
  Ig_GlcNase  15 LnkLpkakvsvtakkke.....etkvtvtLenkssvpAff 49 
                 L +L++  ++++ + +       ++++v+Len+ s++ f 
  CCD23234.1 109 LADLNENVLKAKYAVRGsipmrAEELKVQLENNPSTLPFS 148
                 555555556666554224555699*******998876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3913.05
//
Query:       CCD23235.1  [L=433]
Description: hypothetical protein NDAI_0B02000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-31  110.0   0.3    1.6e-31  109.4   0.3    1.3  1  DnaJ_C           DnaJ C terminal domain
    1.7e-27   95.3   3.1    4.7e-26   90.7   2.0    2.4  2  DnaJ             DnaJ domain
      1e-10   41.8  10.8    3.5e-10   40.1  11.0    1.8  1  DnaJ_CXXCXGXG    DnaJ central domain
    6.4e-05   23.3   0.8    6.4e-05   23.3   0.8    2.4  2  Cytochrom_c3_2   Cytochrome c3
  ------ inclusion threshold ------
       0.01   15.7   8.4      0.065   13.2   0.7    3.1  3  Anti-TRAP        Tryptophan RNA-binding attenuator protein in
      0.017   16.0   4.2       0.43   11.5   0.5    3.3  3  Cytochrome_C554  Cytochrome c554 and c-prime
      0.032   14.2   0.7      0.032   14.2   0.7    2.6  2  zinc_ribbon_6    Zinc-ribbon
      0.099   12.5   0.0        2.2    8.2   0.0    2.3  2  Biotin_lipoyl_2  Biotin-lipoyl like
        1.9    8.6  12.7         13    5.8  12.8    2.3  1  Cytochrome_C7    Cytochrome c7 and related cytochrome c
        2.6    8.0   4.6       0.44   10.5   0.2    1.9  2  NinE             NINE Protein
        3.2    8.0   8.4        1.9    8.7   2.4    2.9  3  Zn-ribbon_8      Zinc ribbon domain
        4.6    7.1  12.7        1.4    8.8   1.2    3.5  3  A2L_zn_ribbon    A2L zinc ribbon domain
        4.9    7.5   7.4         14    6.1   0.6    2.9  3  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.3   1.2e-34   1.6e-31       1     148 []     109     350 ..     109     350 .. 0.92

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 1.2e-34
                 EEEEEEE-HHHHHH-.EEE.EEEE........................................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................................ RF
      DnaJ_C   1 ieveleisleelykGktkkikikrnvi........................................................................ 27 
                 ++++l++s++ely+Gkt k++ krn i                                                                        
  CCD23235.1 109 VKIPLKLSIQELYNGKTFKFQSKRNIIcvqceglgwrrrkngnvtipheieckkcnglgykertrmlipgfvttdkircedchgkgevyakpnseknkc 207
                 5789*********************99************************************************************************ PP

                 ............TEEEEEE-TT--TT-EEEETT-SSSS....S---EEEEEE....E---SS-EEETTEEEEEEEEEHHHHHHT..EEEEEE-SS-EEE CS
                 ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
      DnaJ_C  28 ........kkekktlevkipaGikdgqkirlegeGdeeg..gepGDlivtik....vkphpvFkrkgndlyveveislaeallG..gklevptldgkvk 110
                          +e+k+l v++p+G +++++ir+e+e+d+e    ++GD+i++i+      ++ +F rkg d ++ +++slaeal+G  +k+  + ldg++ 
  CCD23235.1 208 knchgkglLSENKQLLVSVPRGLQNKDTIRIENEADQEIgkSKTGDIILVIEedttMPSDVHFIRKGTDFVMYLSLSLAEALTGfkDKFLSKSLDGRIL 306
                 *******9888899**********************777699**********7764333348*******999999*********885554456666665 PP

                 E......EE--TT-EEEETT-S-EET...TEE--EEEEEEEE-- CS
                 x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C 111 l......kitqpgevlrikgkGmpklkkpgkrGdlyvevkvefP 148
                        k+++pg++++ik++G+p + + +k+Gdlyv +k+efP
  CCD23235.1 307 TlsvpsgKVIRPGNIIKIKQEGWPVNPQASKFGDLYVIIKIEFP 350
                 556677899**********************************9 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   2.0   3.4e-29   4.7e-26       1      63 []       3      68 ..       3      68 .. 0.92
   2 ?    3.3   0.0     0.065        90      37      63 .]     387     413 ..     381     413 .. 0.87

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 3.4e-29
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS..CCHH.HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDkn..pkdp.eaeekFkeineAyevLsdpekRkqYD 63
                d+Y+iLgv+++a+++eIkkaYrklal+yHPDk   p+d+ e+e kFkei+ Aye+Lsd+ekR++YD
  CCD23235.1  3 DLYSILGVTSSATDSEIKKAYRKLALQYHPDKVldPNDReENEIKFKEITSAYEILSDEEKRAHYD 68
                79*****************************9866444448888*********************9 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.065
                 HHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  37 peaeekFkeineAyevLsdpekRkqYD 63 
                 +e    F  ++e  ++L+++++R++YD
  CCD23235.1 387 TETVTTFDILEELPDTLNESNNRSAYD 413
                 46677999******************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1  11.0   2.5e-13   3.5e-10       1      67 []     136     214 ..     136     214 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2.5e-13
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgk........kktCktCkGsG.vvreeqktlgp.fvqqsqstCpeCeGtGkvikekd....kCkkCkGkg 67 
                    C +C+G g +++k        + +Ck+C+G G ++r+++  l p fv++ + +C++C+G+G+v+++ +    kCk+C+Gkg
     CCD23235.1 136 CVQCEGLGWRRRKngnvtiphEIECKKCNGLGyKERTRM--LIPgFVTTDKIRCEDCHGKGEVYAKPNseknKCKNCHGKG 214
                    99******6542224466754448********4444444..77779999999**********99765334449******97 PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.2       1.6   2.2e+03      55      64 ..     154     163 ..     126     170 .. 0.53
   2 !   23.3   0.8   4.6e-08   6.4e-05       5      36 ..     183     214 ..     180     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
                     CTSSS-GGGT CS
  Cytochrom_c3_2  55 hekeleCteC 64 
                     + +e+eC++C
      CCD23235.1 154 IPHEIECKKC 163
                     2334444444 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 4.6e-08
                     CT.TGGGTSSSST-SSTTHHHHHHHHHHH--H CS
  Cytochrom_c3_2   5 egvkCadCHtkekpkkdkaveeekClsCHgkl 36 
                      +++C+dCH+k ++ ++ + e++kC++CHgk 
      CCD23235.1 183 DKIRCEDCHGKGEVYAKPNSEKNKCKNCHGKG 214
                     5689**********9999***********985 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.31   4.2e+02      31      47 ..     134     150 ..     123     156 .. 0.74
   2 ?    4.7   0.2     0.022        30      10      24 ..     157     171 ..     151     177 .. 0.82
   3 ?   13.2   0.7   4.7e-05     0.065      12      43 ..     186     217 ..     180     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.31
                 .E-TTTTTSSEEE-HHH CS
   Anti-TRAP  31 leCPkCsGkglipTaqG 47 
                 + C +C+G g+   ++G
  CCD23235.1 134 IICVQCEGLGWRRRKNG 150
                 56888888888666555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.022
                 EEE-TTTTTTSEETT CS
   Anti-TRAP  10 EtkCdaCngsGkiep 24 
                 E +C++Cng G  e 
  CCD23235.1 157 EIECKKCNGLGYKER 171
                 788999999997765 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 4.7e-05
                 E-TTTTTTSEETTE......E-TTTTTSSEEE CS
   Anti-TRAP  12 kCdaCngsGkiepeeprasleCPkCsGkglip 43 
                  C+ C+g G++ ++ +    +C +C Gkgl+ 
  CCD23235.1 186 RCEDCHGKGEVYAKPNSEKNKCKNCHGKGLLS 217
                 7**********9997778889********974 PP

>> Cytochrome_C554  Cytochrome c554 and c-prime
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   1.0      0.19   2.6e+02      44      83 ..     129     164 ..     113     165 .. 0.72
   2 ?   11.5   0.5   0.00031      0.43      47      84 .]     156     192 ..     145     192 .. 0.84
   3 ?    3.3   0.0      0.11   1.5e+02      47      58 ..     203     214 ..     194     231 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.19
                      --TT-TTTGGGSBSTTTSTT---SSS--GGGBSS-HHHHH CS
  Cytochrome_C554  44 daeeapeClkCHatgagkdkgfvlkektkllagVqCesCH 83 
                      +++++  C++C   g+++ k      +  + ++++C +C 
       CCD23235.1 129 QSKRNIICVQCEGLGWRRRKNG----NVTIPHEIECKKCN 164
                      5667889******999988853....23344579999996 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00031
                      T-TTTGGGSBSTTTSTT---SSS--GGGBSS-HHHHH- CS
  Cytochrome_C554  47 eapeClkCHatgagkdkgfvlkektkllagVqCesCHg 84 
                      ++ eC kC   g+++    +l   + + + + Ce CHg
       CCD23235.1 156 HEIECKKCNGLGYKERTR-MLIPGFVTTDKIRCEDCHG 192
                      5679*********99885.777889999*********9 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.11
                      T-TTTGGGSBST CS
  Cytochrome_C554  47 eapeClkCHatg 58 
                      e+++C +CH  g
       CCD23235.1 203 EKNKCKNCHGKG 214
                      455666666555 PP

>> zinc_ribbon_6  Zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   3.0       6.3   8.6e+03      27      37 ..     131     141 ..     124     165 .. 0.65
   2 ?   14.2   0.7   2.3e-05     0.032      27      54 ..     182     211 ..     171     212 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.3
  zinc_ribbon_6  27 kvkilCnDCek 37 
                    k +i+C  Ce 
     CCD23235.1 131 KRNIICVQCEG 141
                    55677777764 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.3e-05
  zinc_ribbon_6  27 kvkilCnDCekksevkfhvl..glkCkeCg 54 
                    + ki C+DC+ k ev+ +     +kCk+C+
     CCD23235.1 182 TDKIRCEDCHGKGEVYAKPNseKNKCKNCH 211
                    678***********99987612589****7 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.17   2.4e+02      25      36 ..     250     261 ..     250     264 .. 0.86
   2 ?    8.2   0.0    0.0016       2.2       7      30 ..     299     322 ..     296     324 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.17
  Biotin_lipoyl_2  25 kaGdvLaelDsr 36 
                      k+Gd++++++ +
       CCD23235.1 250 KTGDIILVIEED 261
                      89*******976 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0016
  Biotin_lipoyl_2   7 apvsGrVaqlnVkdGqrVkaGdvL 30 
                       +++Gr+ +l V  G+++  G+++
       CCD23235.1 299 KSLDGRILTLSVPSGKVIRPGNII 322
                      578********************9 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  12.8    0.0097        13      45      72 ..     182     211 ..     118     212 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0097
  Cytochrome_C7  45 vesltCgaCHdgknaf..svakkaeCakCH 72 
                    +++  C +CH + ++    + +k++C++CH
     CCD23235.1 182 TDKIRCEDCHGKGEVYakPNSEKNKCKNCH 211
                    22355******999975545679******* PP

>> NinE  NINE Protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00032      0.44       7      41 ..     130     164 ..     127     169 .. 0.90
   2 ?   -2.9   0.6       4.7   6.5e+03      11      17 ..     185     191 ..     181     210 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00032
        NinE   7 sitdiicenckylPtkrsrnkrkPiPkesdvktfn 41 
                 s  +iic  c  l  +r +n +  iP e + k  n
  CCD23235.1 130 SKRNIICVQCEGLGWRRRKNGNVTIPHEIECKKCN 164
                 5568************************9999876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.7
        NinE  11 iicenck 17 
                 i ce+c 
  CCD23235.1 185 IRCEDCH 191
                 6699995 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.3   1.8e+03      18      38 ..     128     146 ..     123     147 .. 0.62
   2 ?    0.9   0.1      0.37   5.1e+02      26      34 ..     157     165 ..     150     170 .. 0.72
   3 ?    8.7   2.4    0.0014       1.9       7      34 ..     186     212 ..     184     215 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.3
  Zn-ribbon_8  18 lqsisdapltaCPeCgs.evrr 38 
                  +qs     ++ C +C +   rr
   CCD23235.1 128 FQSKR---NIICVQCEGlGWRR 146
                  44333...67799998866555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.37
  Zn-ribbon_8  26 ltaCPeCgs 34 
                  +++C++C++
   CCD23235.1 157 EIECKKCNG 165
                  556888875 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0014
  Zn-ribbon_8   7 rCeeCghefevlqsisdapltaCPeCgs 34 
                  rCe+C+ + ev ++ + +++ +C++C++
   CCD23235.1 186 RCEDCHGKGEVYAKPN-SEKNKCKNCHG 212
                  8***********9877.33567****98 PP

>> A2L_zn_ribbon  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.7      0.15     2e+02       4      11 ..     158     165 ..     156     167 .. 0.84
   2 ?    3.0   0.2     0.066        91       5      18 ..     186     199 ..     183     204 .. 0.83
   3 ?    8.8   1.2   0.00099       1.4       3      18 ..     204     218 ..     202     224 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.15
  A2L_zn_ribbon   4 kvCsvCgg 11 
                    ++C++C+g
     CCD23235.1 158 IECKKCNG 165
                    78****98 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.066
  A2L_zn_ribbon   5 vCsvCggngilnse 18 
                     C+ C+g g+++++
     CCD23235.1 186 RCEDCHGKGEVYAK 199
                    5*********9964 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00099
  A2L_zn_ribbon   3 lkvCsvCggngilnse 18 
                     ++C++C+g g+l se
     CCD23235.1 204 KNKCKNCHGKGLL-SE 218
                    68***********.54 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.7     0.031        43      12      23 ..     185     196 ..     181     206 .. 0.76
   2 ?    6.1   0.6      0.01        14      11      24 ..     204     217 ..     199     243 .. 0.80
   3 ?   -2.9   0.0       6.5     9e+03      35      49 ..     362     376 ..     351     381 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.031
  Cytochrome_CBB3  12 knCasCHgkgga 23 
                        C  CHgkg +
       CCD23235.1 185 IRCEDCHGKGEV 196
                      57******9876 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.01
  Cytochrome_CBB3  11 kknCasCHgkggag 24 
                      k++C  CHgkg + 
       CCD23235.1 204 KNKCKNCHGKGLLS 217
                      579******88555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 6.5
  Cytochrome_CBB3  35 dalvdiiknGkgaMp 49 
                      + l++++  G+++M 
       CCD23235.1 362 QLLRNVLPSGINGMM 376
                      667889999998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3081.19
//
Query:       CCD23236.1  [L=281]
Description: hypothetical protein NDAI_0B02010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-69  233.1  11.5    4.4e-69  232.7  11.5    1.1  1  GEP5        Genetic interactor of prohibitin 5
  ------ inclusion threshold ------
      0.029   14.2   1.1      0.068   13.0   0.3    2.1  2  Nsp1_C      Nsp1-like C-terminal region
      0.048   12.7   0.0      0.075   12.0   0.0    1.2  1  HDC         Histidine carboxylase PI chain
       0.12   12.2   2.6       0.54   10.1   0.7    2.3  2  Bunya_NS-S  Bunyavirus non-structural protein NS-s


Domain annotation for each model (and alignments):
>> GEP5  Genetic interactor of prohibitin 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.7  11.5   9.9e-73   4.4e-69       1     223 []      12     235 ..      12     235 .. 0.93

  Alignments for each domain:
  == domain 1  score: 232.7 bits;  conditional E-value: 9.9e-73
        GEP5   1 llrsierLPLhsktlkvLerklksk.dkkkktklvelledineyeksqes.....kykaLeslidkiyfswlnplpehlkfferhykelltfWPyevHs 93 
                 ll+s+++LPLhs+tl++Lerk+ ++  k++k+++++ll+ in+yek+q+s     ++k+Les+i+++yf+w+n+l++hlk+f+r+y++lltfWP+ +Hs
  CCD23236.1  12 LLSSLQNLPLHSNTLAQLERKCLTRnIKATKSFKIPLLTLINSYEKAQASgqsklSNKTLESIIYHTYFEWTNDLASHLKPFQRQYSTLLTFWPHIYHS 110
                 799*******************99989999*******************9************************************************* PP

        GEP5  94 sllssekpkkkslrylweknd......ksvlkelkydknkwlqendkpklteiert.ellkkvfehylFlksnptlcsn.kklkipivEiplnplGldi 184
                 ++    ++kk+s++ +w+k++      +++l++l+y+++          +++++++ +++kk+++hy+Fl+ np+lcsn k+l++pivEip+n++G+di
  CCD23236.1 111 KI----DSKKNSIILTWNKSSnsknmlRELLSHLNYTQS---------LVPQKKDFqVIFKKIYQHYIFLSLNPSLCSNgKRLPSPIVEIPMNAMGYDI 196
                 *9....7889*******9988776666666666666666.........577777775789*************************************** PP

        GEP5 185 pavridnLlkkkvayvkkvLaiekPiLsrenedqLaeIi 223
                 p++ri+nLl++k+a+++++Lai++PiL+ ene+qL+eIi
  CCD23236.1 197 PKKRINNLLRSKIARTWNYLAITNPILNLENEAQLDEII 235
                 **************************************8 PP

>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   1.5e-05     0.068       8      44 ..      58      99 ..      52     145 .. 0.84
   2 ?   -2.0   0.0      0.69   3.1e+03      17      26 ..     228     237 ..     218     249 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
      Nsp1_C  8 iapsaas.lknktldelin....kWtteLeeqekeFeeqakk 44
                ++ s +s l+nktl+++i     +Wt++L +  k F++q ++
  CCD23236.1 58 AQASGQSkLSNKTLESIIYhtyfEWTNDLASHLKPFQRQYST 99
                45556677**********744447************988554 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.69
      Nsp1_C  17 nktldelink 26 
                   +lde+in 
  CCD23236.1 228 EAQLDEIING 237
                 3589999985 PP

>> HDC  Histidine carboxylase PI chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.7e-05     0.075     199     284 ..     122     207 ..     117     217 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.7e-05
         HDC 199 vygedsneeelieflegrrkavtksiaecGkdqevvferiyiGfayvlvepgqiGnaltv.aPyvtlardavPaeskasdlenltls 284
                 ++ + sn++++ + l  ++   t+s++   kd +v+f++iy  + +  ++p    n     +P v ++ +a+  +     ++nl  s
  CCD23236.1 122 TWNKSSNSKNMLRELLSHLN-YTQSLVPQKKDFQVIFKKIYQHYIFLSLNPSLCSNGKRLpSPIVEIPMNAMGYDIPKKRINNLLRS 207
                 79999999999988888875.699****************************9988765438********99988888878877655 PP

>> Bunya_NS-S  Bunyavirus non-structural protein NS-s
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.7   0.00012      0.54       5      43 ..      96     134 ..      93     148 .. 0.81
   2 ?    1.2   0.0      0.07   3.1e+02      20      52 ..     224     256 ..     222     262 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
  Bunya_NS-S   5 glqlrLirrqgmwhlsvsteqgsilllLesSsstrrrpk 43 
                 + ++ L+   +++h++++++++si+l+ + Ss  ++ ++
  CCD23236.1  96 QYSTLLTFWPHIYHSKIDSKKNSIILTWNKSSNSKNMLR 134
                 667889999*******************99888777766 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.07
  Bunya_NS-S  20 svsteqgsilllLesSsstrrrpkllslrrrnq 52 
                 +++ e ++  +  +sS  + r+++ l++r  ++
  CCD23236.1 224 NLENEAQLDEIINGSSAIKSRQLRKLYRRACSN 256
                 56666677777789*************997655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1955.44
//
Query:       CCD23237.1  [L=905]
Description: hypothetical protein NDAI_0B02020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.4e-125  418.2  10.0   3.2e-125  417.9  10.0    1.1  1  Sulfate_transp  Sulfate permease family
    3.9e-06   26.5   0.0    7.5e-06   25.6   0.0    1.4  1  STAS            STAS domain
      0.007   16.7   0.1      0.015   15.7   0.1    1.4  1  STAS_2          STAS domain
  ------ inclusion threshold ------
      0.026   14.9   1.0      0.026   14.9   1.0    2.2  2  MFS_MOT1        Molybdate transporter of MFS superfamily


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.9  10.0    7e-129  3.2e-125       1     380 []     149     556 ..     149     556 .. 0.98

  Alignments for each domain:
  == domain 1  score: 417.9 bits;  conditional E-value: 7e-129
  Sulfate_transp   1 lkgDliaGitvallaiPqalayallaglppiygLyssvvpqlvyalfGtsrqlavGpvavlslivgeiiakv.....aeeepekgieiattltll 90 
                     + +DliaGitv+++++Pq+++ya++a+lpp+ygLyss+++++ y+lf+ts+++++Gpvav+sl +g++i kv      ++ ++++  iat+l++l
      CCD23237.1 149 FSSDLIAGITVGCVLVPQSMSYAQIATLPPQYGLYSSFIGAFTYSLFATSKDVCIGPVAVMSLETGKVITKVlakypEADPNITAPVIATVLAFL 243
                     789*********************************************************************77665555599************ PP

  Sulfate_transp  91 aGviqvllGllRLgflveflseavlsGfiaGaaivillsqikvllgle.rvskkeslvsvlsslftnlekvnlakvvlgllllvvLlvtkellkk 184
                     +Gvi + +G+lRLgflve++s ++++Gf++G+a++i++ qi  l+g+  +v++++s+++v+++ +++l++++ +++v+gl+ l++L+++k+++ +
      CCD23237.1 244 CGVITAGIGFLRLGFLVELISLNAVTGFMTGSALNIMWGQIPALMGYGsKVNTRTSTYKVIIESLKHLPDTK-LDAVFGLIPLFILYLWKWWCGN 337
                     ***********************************************99*********************99.9********************* PP

  Sulfate_transp 185 lkkl....................lvipapaelvavivatlvsaif...elkreagvkivgeipsglpelslpkvdwsllsallpdalaialvgl 256
                     +  +                    ++++a  + v++iv+t +++ +   + k+e+ ++i+g++p+gl+e+++ k++  l s+++p+++a  +v l
      CCD23237.1 338 MGPRmadkwfannekgnfylkkfyFYAQAAKNAVIIIVFTAIAWSItkgKTKDERPISILGSVPKGLKEVGVMKLPDGLASKIAPELPASVIVLL 432
                     ***9************************************9999999**9********************************************* PP

  Sulfate_transp 257 leaiavsksldkkkgykvdsnkELvAlGfsNilsslfgglpatgafsrsavnikaGaktqlsglvsalvvllvllvltplleyiPkavLaaiiiv 351
                     le+ia++ks++++++ykv +++EL+A+G++N+++++f+++patg+fsrsa+++k++++t+lsgl+++ +vll+l++lt+++ yiPka+L+a+ii+
      CCD23237.1 433 LEHIAIAKSFGRINDYKVVPDQELIAIGVTNLIGTFFNAYPATGSFSRSALKAKCEVRTPLSGLFTGSCVLLALYCLTGVFLYIPKATLSAVIIH 527
                     *********************************************************************************************** PP

  Sulfate_transp 352 agkglLvelkelkklwklskldflillat 380
                     a+++l++++++++++wk+++ld++ +++t
      CCD23237.1 528 AVSDLIASYHTTWNFWKMNPLDCFSFIVT 556
                     ************************99987 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.7e-09   7.5e-06       7     101 ..     688     841 ..     683     852 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 1.7e-09
                 CTTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC...............................................................-SE CS
        STAS   7 iegililrldgpidfanaesfkeklkravgeeperve.......................................................kkeslks 50 
                 ++g++++rl+  +++ n ++  + + + ++++++r +                                                       ++  lk 
  CCD23237.1 688 PPGVIVYRLTDSFTYMNCSKHYDVIFEEIKKQTKRGQlirhrkksdrpwndpgeweapnfsklwkklsfrrnknnndneethipdvpvskrdDRPLLKV 786
                 799****************9999999999999999989999**************************************************999***** PP

                 EEEEEEEEEEE-HHHHHHHHHHHHHHH...HTT-EEEEES--HHHHHH.HHHTTC CS
        STAS  51 lildlsavsfiDssGvraLkeilkelk...rigvevvlvnikpevrek.lektgf 101
                 l ld+s+v  +D +++++L++++k ++    ++ve+ +++i +  ++k l + gf
  CCD23237.1 787 LCLDFSQVAQVDATALQSLVDLRKAINkyaDRQVEFHFAGIVSPWIKKgLINIGF 841
                 ********************99987662226899999999876666665555555 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   3.3e-06     0.015      29      63 ..     787     822 ..     780     827 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.3e-06
      STAS_2  29 vvvDlsgvervDsaalalLlalartara.rgrrlvl 63 
                 +++D+s+v +vD++al+ L++l+++  + ++r++++
  CCD23237.1 787 LCLDFSQVAQVDATALQSLVDLRKAINKyADRQVEF 822
                 79*********************9987766666665 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.5      0.69   3.1e+03      71     105 ..     233     273 ..     167     279 .. 0.62
   2 ?   14.9   1.0   5.7e-06     0.026      10     106 ..     424     527 ..     415     532 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.69
    MFS_MOT1  71 agillGlvllllgltg......llerllrliPksvlgglll 105
                 a ++  ++ +l g++        l  l++li    + g + 
  CCD23237.1 233 APVIATVLAFLCGVITagigflRLGFLVELISLNAVTGFMT 273
                 33333344333343332222233444555555555555555 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 5.7e-06
    MFS_MOT1  10 lglTllnlvialaala.........slsltalllsvGlmnlltglfggvPmc.hgAgglaaqyrfgartgaagillGlvllllgltgllerllrliPks 98 
                 l+  ++ l++  +a+a         ++ +++ l+ +G+ nl++ +f + P     +  ++   + + rt  +g+++G+++ll  ++  l+ +  +iPk+
  CCD23237.1 424 LPASVIVLLLEHIAIAksfgrindyKVVPDQELIAIGVTNLIGTFFNAYPATgSFSRSALKA-KCEVRTPLSGLFTGSCVLLALYC--LTGVFLYIPKA 519
                 55444444444444446667777778889999******************997666655555.45**************9865444..68888999999 PP

    MFS_MOT1  99 vlgglllg 106
                  l ++++ 
  CCD23237.1 520 TLSAVIIH 527
                 99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 6012.54
//
Query:       CCD23238.1  [L=159]
Description: hypothetical protein NDAI_0B02030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1157.24
//
Query:       CCD23239.1  [L=236]
Description: hypothetical protein NDAI_0B02040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-61  205.3   0.4    3.4e-61  205.3   0.4    1.5  2  Nyv1_N         Vacuolar R-SNARE Nyv1 N terminal
    2.8e-26   91.1   3.0      4e-26   90.6   3.0    1.2  1  Synaptobrevin  Synaptobrevin
  ------ inclusion threshold ------
      0.017   14.7   0.3      0.026   14.1   0.3    1.2  1  Fzo_mitofusin  fzo-like conserved region
      0.055   13.0   2.3      0.075   12.6   2.3    1.2  1  DUF1002        Protein of unknown function (DUF1002)
      0.076   12.3   0.2       0.11   11.8   0.2    1.2  1  DUF2391        Putative integral membrane protein (DUF2391)


Domain annotation for each model (and alignments):
>> Nyv1_N  Vacuolar R-SNARE Nyv1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.3   0.4   9.4e-65   3.4e-61       1     138 []       6     145 ..       6     145 .. 0.96
   2 ?   -2.2   0.1       1.1   3.8e+03      79      99 ..     154     174 ..     152     205 .. 0.56

  Alignments for each domain:
  == domain 1  score: 205.3 bits;  conditional E-value: 9.4e-65
      Nyv1_N   1 vsyvevikdgetisscfe..ekeekessYgsiseedkaatkkvfhkLikdlvlpkvvkveGnkvtkvslklidGydcyYttsdekkvlvcftkvdvPki 97 
                 vsyvev+kdg+tissc++  + + ++++Ygsi + +++ t+++fhkLi+d+vlpkv++v Gnkvtkvsl+lidG+dcyYtt++++kvl+cft+vd+Pki
  CCD23239.1   6 VSYVEVTKDGNTISSCYDsnDGNFGRNTYGSILN-NSIPTPDIFHKLIHDMVLPKVIPVIGNKVTKVSLDLIDGFDCYYTTDEDDKVLICFTQVDIPKI 103
                 8****************954455678*******8.69************************************************************** PP

      Nyv1_N  98 lPirlLseLk.ealendtdeeLkakveeildefheeLlsyrn 138
                 lPirlLseLk e+++n +++eL a+v++ildefheeL+sy+n
  CCD23239.1 104 LPIRLLSELKgEKKNNYSNNELGAHVGKILDEFHEELMSYKN 145
                 **********999999************************98 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
      Nyv1_N  79 tsdekkvlvcftkvdvPkilP 99 
                 t+d+ + ++ +++ ++ k+l 
  CCD23239.1 154 TEDDIQDIIKIMNNNIDKFLE 174
                 556666666666666666654 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   3.0   1.1e-29     4e-26       6      87 ..     152     233 ..     147     235 .. 0.95

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 1.1e-29
                    HHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   6 akikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlililiiiivi 87 
                    ++++++++++ +im++Nidk+ler+e++++Lvdkt++L++++ +Fkk+a ++k++mww++mk + +l++++++ i  ++i++
     CCD23239.1 152 DTTEDDIQDIIKIMNNNIDKFLERQERISLLVDKTSQLNDNSHNFKKKAARIKERMWWQRMKNTTLLMFAIILTISALFIFF 233
                    6789********************************************************************9999999886 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.3   7.2e-06     0.026      96     158 ..     137     199 ..     125     201 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.2e-06
  Fzo_mitofusin  96 qqelsstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekfeeq 158
                    ++el s+ +   q+ d+te+++++ ik ++++i+k  e q++  ll +k+s+l+ + ++f+++
     CCD23239.1 137 HEELMSYKNDSGQEGDTTEDDIQDIIKIMNNNIDKFLERQERISLLVDKTSQLNDNSHNFKKK 199
                    678999999999********************************************9999975 PP

>> DUF1002  Protein of unknown function (DUF1002)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.3   2.1e-05     0.075     156     219 ..     129     201 ..     106     203 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
     DUF1002 156 vaevkeevak...........eklkteeeikkiveevanelninlsdeqiqqivnllkkiqkldldlkelkkqlk 219
                 v ++ +e  +           e  +te++i++i++ + n+++  l+ ++  +i  l++k ++l+ +++++kk++ 
  CCD23239.1 129 VGKILDEFHEelmsykndsgqEGDTTEDDIQDIIKIMNNNIDKFLERQE--RISLLVDKTSQLNDNSHNFKKKAA 201
                 333333322223334444443779***********99888888887765..59999***************9876 PP

>> DUF2391  Putative integral membrane protein (DUF2391)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   3.2e-05      0.11     196     234 ..     195     233 ..     192     235 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.2e-05
     DUF2391 196 gftgqekreeqrgifqrflsetvvsYlvsLlvslllLwf 234
                 +f+++ +r ++r ++qr+ + t++++++ L++s+l ++f
  CCD23239.1 195 NFKKKAARIKERMWWQRMKNTTLLMFAIILTISALFIFF 233
                 799*******************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1392  (0.0776396); expected 358.6 (0.02)
Passed bias filter:                      710  (0.0396006); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1760.65
//
Query:       CCD23240.1  [L=582]
Description: hypothetical protein NDAI_0B02050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.059   13.6   0.5       0.98    9.7   0.1    3.0  3  Ribosomal_S10  Ribosomal protein S10p/S20e


Domain annotation for each model (and alignments):
>> Ribosomal_S10  Ribosomal protein S10p/S20e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   5.5e-05      0.98      41      65 ..      34      58 ..      20      65 .. 0.90
   2 ?   -0.2   0.0     0.068   1.2e+03      36      57 ..     200     221 ..     191     231 .. 0.80
   3 ?   -3.3   0.0       0.6   1.1e+04      24      58 ..     331     365 ..     329     369 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 5.5e-05
                   EEEEEE--SS--S--EEEEEEEEEE CS
  Ribosomal_S10 41 krvtvlksphvdkksreqfeirthk 65
                    ++tvlk p+  kk +e++ i+ h 
     CCD23240.1 34 GSYTVLKRPCSTKKYQENISITSHT 58
                   689*******************996 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.068
                    EEEEEEEEEEE--SS--S--EE CS
  Ribosomal_S10  36 lPtkrkrvtvlksphvdkksre 57 
                    l t    + vl+s +++++   
     CCD23240.1 200 LQTDSNNWEVLRSESINQDDDY 221
                    7899999********9876554 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.6
                    TSSS-EE---EEEEEEEEEEEEE--SS--S--EEE CS
  Ribosomal_S10  24 kelgikvkgpvplPtkrkrvtvlksphvdkksreq 58 
                    ke++i++k p++  +  ++   l+s   d   r++
     CCD23240.1 331 KEKNIDLKMPYARQNNSLSSKFLRSTLKDNVIRDE 365
                    57788888888888888888888888777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       657  (0.0366445); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4307.57
//
Query:       CCD23241.1  [L=915]
Description: hypothetical protein NDAI_0B02060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.02   14.8   1.5      0.062   13.2   1.5    1.8  1  PHD       PHD-finger
      0.078   12.8   0.1       0.19   11.6   0.1    1.6  1  Prion     Prion/Doppel alpha-helical domain


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.5   6.9e-06     0.062      13      31 ..     587     605 ..     582     610 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.9e-06
                 SCEEEETTTSCEEETTTSS CS
         PHD  13 eelvqCdgCkrwfHqkClk 31 
                 + l++Cd C +w+H +C +
  CCD23241.1 587 KPLICCDVCFKWQHWDCQS 605
                 679**************76 PP

>> Prion  Prion/Doppel alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   2.1e-05      0.19      48      97 ..     143     190 ..     113     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHCCHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH-XXX CS
       Prion  48 vNitvtenqiepaeekteneleqrvlervirelCiekycefslrrgaGlr 97 
                  N t++ n+ +  e++++++l+ ++ ++++r+l  +k  e  lr+  G+ 
  CCD23241.1 143 SNRTQAVNKSTGNEDQESDNLYLKIKHQLLRQLANNKNTE--LRNFNGIV 190
                 699********************************99777..88888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1360  (0.0758548); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 6116.49
//
Query:       CCD23242.1  [L=1258]
Description: hypothetical protein NDAI_0B02070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-69  234.2   1.7    3.4e-67  226.6   1.7    2.5  1  Pkinase         Protein kinase domain
    7.6e-41  140.1   0.5    5.1e-39  134.1   0.5    2.4  1  Pkinase_Tyr     Protein tyrosine kinase
    4.8e-18   64.7   0.1    9.6e-18   63.7   0.1    1.5  1  KA1             Kinase associated domain 1
    9.9e-07   28.3   0.0      2e-06   27.3   0.0    1.5  1  Kinase-like     Kinase-like
    0.00034   20.0   0.2    0.00069   19.0   0.2    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0024   16.7   2.2     0.0046   15.8   0.3    2.6  2  Pkinase_fungal  Fungal protein kinase
     0.0081   16.1   0.1       0.25   11.3   0.0    2.4  2  APH             Phosphotransferase enzyme family
     0.0083   15.1   3.5      0.016   14.2   0.2    2.5  2  Haspin_kinase   Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.6   1.7   1.5e-70   3.4e-67       3     264 .]     166     442 ..     164     442 .. 0.93

  Alignments for each domain:
  == domain 1  score: 226.6 bits;  conditional E-value: 1.5e-70
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH...........................HHHHHHHHHHHHHSCTTB--EEEEEEESSEEE CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke...........................kkvlrEikilkklkhpnivrlyevfeekdely 74 
                  le++G Gs+GkV  a++++t++i A+K++++  +   ++                           k+++rE ++ + l hp+i+rl+e+++ ++++y
  CCD23242.1 166 FLETVGAGSMGKVKLAKHHQTQEICAIKIVNRATKAFLHKeqsmpppkneqeiaerqkrlekeisrdKRTVREASLGQILYHPHICRLFEMCTMSNHFY 264
                 5789**************************98776533333467788999999************9999****************************** PP

                 EEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSC CS
     Pkinase  75 lvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkene 173
                 +++eyv+gg+l d++ ++gsl e++a+k+a+ i+++l+ylH ++i+HrDlK eNi+i+++ge+Ki+DFGl++ ++++++l++f+g+ ++ APE+lk+++
  CCD23242.1 265 MLFEYVSGGQLLDYIIQHGSLREHHARKFARGIASALQYLHLNNIVHRDLKIENIMISNSGEIKIIDFGLSNVFDNRKQLHTFCGSLYFAAPELLKAHP 363
                 *************************************************************************************************** PP

                 B.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 174 y.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 y +++vDvWs G++ly l++gk pf  +++++  +++++q             k++ ++++s e+++ll+k++ +dp kR + +++++hp++
  CCD23242.1 364 YtGPEVDVWSFGIVLYVLVCGKVPFD-DENSSVLHEKIRQ------------GKVEYPNHLSIEVISLLSKMIVVDPAKRASLRQVVEHPWM 442
                 *99***********************.4444444555555............5789999********************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.5   2.3e-42   5.1e-39       8     257 ..     171     438 ..     164     439 .. 0.82

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 2.3e-42
                  EEESSEEEEEEEEET........................TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE CS
  Pkinase_Tyr   8 GeGafGkVvegtlkg........................ekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivte 81 
                  G+G+ GkV  ++ ++                           k+e+++a ++ + e++ ++ ++ ++ea++ + l hp+i +l  +ct +++ ++++e
   CCD23242.1 171 GAGSMGKVKLAKHHQtqeicaikivnratkaflhkeqsmPPPKNEQEIAERQKRLEKEISRDKRTVREASLGQILYHPHICRLFEMCTMSNHFYMLFE 268
                  555555555555555555555555555555555544444334455566655555555556669999***999999*********************** PP

                  --TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHH CS
  Pkinase_Tyr  82 yvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslke 179
                  yv+gG+Ll+++ ++   +l+ ++  +fa  +A++++yL+ +++vHrdl   N+++s++  +ki DfGL++     d+ ++ ++   ++ + apE lk+
   CCD23242.1 269 YVSGGQLLDYIIQH--GSLREHHARKFARGIASALQYLHLNNIVHRDLKIENIMISNSGEIKIIDFGLSNVF---DNRKQLHTFCGSLYFAAPELLKA 361
                  *************9..9*****************************************************99...455555566678999******** PP

                  SEEE.HHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 180 kkft.sksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  + +t  + DvWsfG++l+ +++ g+ p+ + +++ + ek+++g ++e p++ + e+ +l++k    dp++R++++++ve
   CCD23242.1 362 HPYTgPEVDVWSFGIVLYVLVC-GKVPFDDENSSVLHEKIRQG-KVEYPNHLSIEVISLLSKMIVVDPAKRASLRQVVE 438
                  **994589**********9998.*****998877777777766.689*****************************997 PP

>> KA1  Kinase associated domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.1   4.3e-21   9.6e-18       3      45 .]    1216    1258 .]    1214    1258 .] 0.97

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 4.3e-21
         KA1    3 vkFEievcKlpelslygvrfkRlsGdtwqYkrlasqilseLkL 45  
                  +kFEi+++K++ ++l gv+fk++sG+tw Yk+las+il+eL+L
  CCD23242.1 1216 LKFEIHIVKVRIVGLAGVHFKKVSGNTWLYKELASDILKELNL 1258
                  8****************************************98 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0     9e-10     2e-06     143     277 ..     288     415 ..     211     430 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 9e-10
  Kinase-like 143 tiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGl 238
                  ++ar+     +    ++L+ + +vh +++ +n++  + g +++ +f+      ++ +l + +    fa pEll +   y          ++d+W  G+
   CCD23242.1 288 HHARKFA-RGIASALQYLHLNNIVHRDLKIENIMISNSGEIKIIDFGLSNVFDNRKQLHTFCgsLYFAAPELLKA-HPY-------TGPEVDVWSFGI 376
                  3344333.22334479******************************987777778887888866779*****998.223.......3478******** PP

  Kinase-like 239 viyriwclklPltlateeakeewkfklck.kipekvkaLl 277
                  v y + c k+P++   + +  e k ++ k + p+++ + +
   CCD23242.1 377 VLYVLVCGKVPFDDENSSVLHE-KIRQGKvEYPNHLSIEV 415
                  ***************9999998.77766666666554433 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   3.1e-07   0.00069      94     167 ..     265     333 ..     257     344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.1e-07
         Kdo  94 llterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                 +l e + g q L+ +++ + +l e+  r+  + ++ + + lh  ++ H+dl + ni++ + +    ei +iD+ 
  CCD23242.1 265 MLFEYVSGGQLLDYIIQ-HGSLREHHARKFARGIASALQYLHLNNIVHRDLKIENIMISNSG----EIKIIDFG 333
                 56777788887888887.57799999999999*****************************9....9*****95 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3     2e-06    0.0046     317     394 ..     299     365 ..     177     383 .. 0.86
   2 ?   -4.2   0.1       2.4   5.5e+03     182     225 ..    1176    1216 ..    1161    1224 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2e-06
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyr 394
                      +++ L+   +i+HrD  ++Ni+i      ++ +  +iD+ l    ++   +++ ++  G l+F a e+lk   H y 
      CCD23242.1 299 SALQYLH-LNNIVHRDLKIENIMIS-----NSGEIKIIDFGLSNVFDN---RKQLHTFCGSLYFAAPELLK--AHPYT 365
                     5678899.89***************.....6778899****9988884...4556899*************..56654 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 2.4
  Pkinase_fungal  182 aerksEaelLkkaeergvegvarlvahedveekdddiaeiRkgl 225 
                      +++++E ++L      +++++ ++ +++ +++++ d +++R  l
      CCD23242.1 1176 TQQQQEDDMLSTT---KIQEMNKVDSDNALNTNTPDKTKARVPL 1216
                      5677888888877...6777777666777764444444555555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.084   1.9e+02      55     103 ..     251     298 ..     216     306 .. 0.69
   2 !   11.3   0.0   0.00011      0.25     168     196 ..     309     335 ..     307     338 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.084
                 -B-CTTBS-EEETTEEEEEEE----EE-SS..HHHHHHHHHHHHHHHHHHC CS
         APH  55 Pevlagdtddeeigllfalieyvpgrsllr..klsaaqlpellealgefla 103
                  +++ ++t      + + l+eyv g +ll+   ++ + +++ ++++++ +a
  CCD23242.1 251 CRLFEMCTMS---NHFYMLFEYVSGGQLLDyiIQHGSLREHHARKFARGIA 298
                 3444444444...44568*************98889999999998888765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00011
                 EE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfeda 196
                 ++H+Dl+  N+++  + g++  +iDf+++
  CCD23242.1 309 IVHRDLKIENIMIS-NSGEI-KIIDFGLS 335
                 79************.66666.6****975 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2     7e-06     0.016     230     259 ..     311     340 ..     306     349 .. 0.86
   2 ?    0.4   0.4      0.11   2.5e+02     305     346 ..     546     587 ..     536     603 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7e-06
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsRless 259
                    HRdL+++ni++ +++++ +id+ ls + ++
     CCD23242.1 311 HRDLKIENIMISNSGEIKIIDFGLSNVFDN 340
                    ***********************9987644 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
  Haspin_kinase 305 llwlhyLavkLlkkknkklnseaekrvkerleklaklldpaa 346
                    ll +++L++++l++k  kl+ +++    ++l+ l k+ + + 
     CCD23242.1 546 LLSIYHLVHEMLTRKAAKLQRKQAAIAAHQLQILQKQSQANN 587
                    78999***********99999998999989999988886443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1353  (0.0754643); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 7817.09
//
Query:       CCD23243.1  [L=273]
Description: hypothetical protein NDAI_0B02080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-08   35.2  11.5    0.00037   20.8   2.1    2.6  2  zf-C2H2      Zinc finger, C2H2 type
    7.8e-06   26.3  11.0      0.024   15.4   1.8    2.6  2  zf-C2H2_4    C2H2-type zinc finger
    0.00014   22.1  12.7    0.00016   22.0   0.9    3.4  3  zf-H2C2_2    Zinc-finger double domain
  ------ inclusion threshold ------
      0.011   16.1   8.3      0.023   15.1   1.0    3.3  3  zf-met       Zinc-finger of C2H2 type
       0.42   11.0   5.8        1.7    9.0   0.1    2.8  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
          1   10.1   5.7       0.17   12.5   1.3    2.0  2  FOXP-CC      FOXP coiled-coil domain
        4.5    7.1  11.4        6.4    6.6   0.1    3.2  3  zf-H2C2_5    C2H2-type zinc-finger domain


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   2.2   4.8e-07    0.0012       2      23 .]     210     231 ..     209     231 .. 0.95
   2 !   20.8   2.1   1.4e-07   0.00037       1      23 []     237     261 ..     237     261 .. 0.98

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.8e-07
                 EETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                 +C++Cgk+++r+s Lk+H  +H
  CCD23243.1 210 QCSVCGKVCSRPSTLKTHFLIH 231
                 7*****************9988 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.4e-07
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 +kC+  +C+k F+ ksn+ rH+++H
  CCD23243.1 237 FKCSweGCHKAFNVKSNMLRHMKSH 261
                 89**********************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   2.2   9.4e-06     0.024       2      23 ..     210     231 ..     209     232 .. 0.94
   2 !   15.4   1.8   9.4e-06     0.024       1      23 [.     237     261 ..     237     262 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.4e-06
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                 +C++Cgk++s++++L++H++ h
  CCD23243.1 210 QCSVCGKVCSRPSTLKTHFLIH 231
                 8******************998 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 9.4e-06
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 fkC++  C+k F+ k+++lrH+k+h
  CCD23243.1 237 FKCSWegCHKAFNVKSNMLRHMKSH 261
                 89**********99999*******9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.027        69      16      24 ..     210     218 ..     187     220 .. 0.85
   2 !   22.0   0.9   6.2e-08   0.00016       2      25 ..     224     249 ..     223     249 .. 0.94
   3 ?    2.5   1.1     0.086   2.2e+02       3      10 ..     255     262 ..     253     270 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.027
   zf-H2C2_2  16 eCplCdkaF 24 
                 +C++C+k+ 
  CCD23243.1 210 QCSVCGKVC 218
                 9******86 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 6.2e-08
   zf-H2C2_2   2 LrrHirkHtgekpyeCp..lCdkaFk 25 
                 L+ H+  Htg++p++C+   C+kaF+
  CCD23243.1 224 LKTHFLIHTGDTPFKCSweGCHKAFN 249
                 889***************88*****6 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.086
   zf-H2C2_2   3 rrHirkHt 10 
                  rH+++H 
  CCD23243.1 255 LRHMKSHE 262
                 69*****7 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.57   1.5e+03       6      17 ..      98     109 ..      96     110 .. 0.88
   2 ?   15.1   1.0   9.1e-06     0.023       2      20 ..     210     228 ..     209     231 .. 0.93
   3 ?    3.2   0.7     0.049   1.2e+02       6      23 ..     244     261 ..     242     262 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.57
      zf-met   6 Cnvtfnsesqlk 17 
                 C++ +++e++l 
  CCD23243.1  98 CDTFHKDEAALL 109
                 ********9985 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 9.1e-06
      zf-met   2 yCelCnvtfnsesqlksHl 20 
                 +C++C ++++ +s+lk+H+
  CCD23243.1 210 QCSVCGKVCSRPSTLKTHF 228
                 6*****************7 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.049
      zf-met   6 CnvtfnsesqlksHlqGK 23 
                 C++ fn +s++  H++++
  CCD23243.1 244 CHKAFNVKSNMLRHMKSH 261
                 9999999*********97 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00068       1.7       4      21 ..     211     228 ..     210     229 .. 0.96
   2 ?    2.9   1.8     0.055   1.4e+02       7      24 ..     244     261 ..     244     262 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00068
                  BTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHl 21 
                  C +C K ++  ++l++H+
   CCD23243.1 211 CSVCGKVCSRPSTLKTHF 228
                  9****************7 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.055
                  TTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkSK 24 
                  C K F+  +++  H+kS+
   CCD23243.1 244 CHKAFNVKSNMLRHMKSH 261
                  9999*************7 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2         4     1e+04      12      26 ..     214     228 ..     210     232 .. 0.73
   2 ?   12.5   1.3   6.7e-05      0.17       6      37 ..     238     269 ..     237     273 .] 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4
     FOXP-CC  12 Cekvledveeflkhl 26 
                 C kv++  +++  h+
  CCD23243.1 214 CGKVCSRPSTLKTHF 228
                 777787777777664 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 6.7e-05
     FOXP-CC   6 vCkWPgCekvledveeflkhlnseHalddkst 37 
                  C W gC+k+++  +++l+h++s+ +  +k t
  CCD23243.1 238 KCSWEGCHKAFNVKSNMLRHMKSHERRRNKKT 269
                 5********************99888777765 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1    0.0025       6.4      11      26 .]     219     233 ..     210     233 .. 0.88
   2 ?   -1.0   0.2      0.61   1.6e+03       1       5 [.     237     241 ..     237     241 .. 0.91
   3 ?    6.1   1.7    0.0036       9.2      13      24 ..     251     261 ..     250     263 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0025
   zf-H2C2_5  11 awksnLkRHlrrkHtg 26 
                 +++s+Lk H + +Htg
  CCD23243.1 219 SRPSTLKTHFL-IHTG 233
                 689********.***8 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.61
   zf-H2C2_5   1 YKCsq 5  
                 +KCs+
  CCD23243.1 237 FKCSW 241
                 9**98 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0036
   zf-H2C2_5  13 ksnLkRHlrrkH 24 
                 ksn+ RH++  H
  CCD23243.1 251 KSNMLRHMK-SH 261
                 9********.88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1946.63
//
Query:       CCD23244.1  [L=74]
Description: hypothetical protein NDAI_0B02090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0037   17.0   0.0      0.005   16.6   0.0    1.2  1  B12D      NADH-ubiquinone reductase complex 1 MLRQ subunit


Domain annotation for each model (and alignments):
>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.8e-07     0.005       4      30 ..      22      48 ..      20      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.8e-07
        B12D  4 eliPLfvfigagvggavfylvRllltn 30
                el PLf+++g++++  ++++++ l+++
  CCD23244.1 22 ELTPLFMAVGVALMSGTWFTYKKLTYD 48
                89*******************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 589.64
//
Query:       CCD23245.1  [L=531]
Description: hypothetical protein NDAI_0B02100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.8e-132  440.9   0.0   4.5e-132  440.7   0.0    1.0  1  MmgE_PrpD  MmgE/PrpD family


Domain annotation for each model (and alignments):
>> MmgE_PrpD  MmgE/PrpD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  440.7   0.0  2.5e-136  4.5e-132       2     435 ..      57     512 ..      56     515 .. 0.96

  Alignments for each domain:
  == domain 1  score: 440.7 bits;  conditional E-value: 2.5e-136
                 HHHHHHHHH-----H..HHHHHHHHHHHHHHHHHHHHTT-HHHHTT-S.SSTT-B-TT-EE-TTSS-EE-HHHHHHHHHHHHHCTS-S-BEESSSEE-G CS
   MmgE_PrpD   2 eqlaefvaelryddlpeevverakrlilDtlGvalaglrepavkkale.avkgtggpggatvigtgerlspvkAAfvnGaaihalDfdDthlaaelhhp 99 
                 +++a++v+++++d+    + ++ak ++lDtlG++la+l++p v+ +++ +v+gt  p+g++v+gt++ ++pv++Afv G++i++lDf+D++la+e++hp
  CCD23245.1  57 QDIAHYVHNISIDSQ--LAKDTAKLCLLDTLGCGLAALKYPHVQDIIKpIVPGTVIPNGTKVFGTNYVTDPVRGAFVVGTLIRWLDFNDCWLAKEWGHP 153
                 79************9..********************************************************************************** PP

                 GGGHHHHHHHHHHHHHH............B.HHHHHHHHHHHHHHHHHCCC--SCCCT.B-THHHHHHHHHHHHHHHTT--HHHHHHHHHHHHCT-B-B CS
   MmgE_PrpD 100 sdvlpaalAvAealgas............g.kdlLtAivvGyEvqgrlglalsfnhygfhdtvtlgtfgaaaaaakLlgLdaeqianAlgiaatqaagl 185
                 sd+l+++l vA+++ +             + +d+L+ +++++E+qg ++l +s+n++g +d+v+l++++++a+++k+l+L++eq+++A+++a+++++ l
  CCD23245.1 154 SDNLGGILPVADYMTRLyrasngkegkvfSvDDILECMIKAHEIQGIIALDNSLNEVG-LDHVALVKIATTAVVSKMLQLSEEQTIEAVSHAFVDGQPL 251
                 ****************99***********66***************************.**************************************** PP

                 SGGGSTTT--CHH.CHHHHHHHHHHHHHHHHHTT---..TTTTT-TTTSHHHHHSTT-----S.S-SS...SHHHHC-B---.SSS-CCCHHHHHHHHH CS
   MmgE_PrpD 186 rqyrhagtkskkl.waaGdAarnGveaallAkrGftG..psdilegewGflavlsggkdlelevkplgegesweienvlfKp.ypaerhthaaidaalk 280
                 r+yrha+++++++ waaGdA++++v++a+++k+   G   s +++++wG+++vl++gk++ ++ ++ +   s+++envlfK+ +pae+h+++a++a +k
  CCD23245.1 252 RTYRHAPNTGSRKsWAAGDAVSRAVNLAFMVKNAGIGtiHSVLTARKWGVYDVLFNGKPFIFD-QKKE-YGSYVMENVLFKIsFPAEFHAQTAVEAGMK 348
                 ********************************8777768899999**************9999.4333.57**************************** PP

                 HHHHHCCT...CCCEEEEEEEE-HHHHHHC---S---SHHHHCT-CCHHHHHHHHCS---CCCCSCCCCTSCHHCCHHCCEEEEE-HHHHHHH..TTT- CS
   MmgE_PrpD 281 lraelklk...pddIesieirtseaalriigkkgppenradadhSlqyvvAvalldgrvtledfederladpevqaLrekvevvedpeltady..pekr 374
                  ++ l ++   ++dI+s++irt++ a++ii+k gp+ n ad+dh++qy++ ++l++gr++++d+ d+++   +++ Lr+k+ + +d+e+t+dy  pekr
  CCD23245.1 349 AHRVLLDNgrtYKDIKSVRIRTQQPAIDIIDKVGPLYNYADRDHCIQYMTTIPLIYGRLEADDYMDAVALLADIDVLRNKIYCIKDAEFTKDYynPEKR 447
                 **999888889**************************************************************************************** PP

                 --...EEEEETTS-B---EEESS-TTS.GGHHHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHH CS
   MmgE_PrpD 375 si...vvvvlkdggrtleerveypkGh.prnplsreeleeKfrrlaegvlseeeaereeileevl 435
                 si   + v+l+dg+ ++e  veyp+Gh +r++++ + l++Kfr++++++   +  +++ei+  ++
  CCD23245.1 448 SIanaLLVELNDGTFLDEIVVEYPIGHkFRREEGIPLLLKKFRNHLSTYSHYSPGKADEIYRLSM 512
                 **********************************************9988877877777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3796.52
//
Query:       CCD23246.1  [L=846]
Description: hypothetical protein NDAI_0B02110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.1e-196  652.8   0.6   7.5e-196  652.3   0.6    1.2  1  Nic96     Nup93/Nic96
  ------ inclusion threshold ------
        0.1   12.3   0.1        0.4   10.4   0.1    2.0  1  TFB6      Subunit 11 of the general transcription factor TFII


Domain annotation for each model (and alignments):
>> Nic96  Nup93/Nic96
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  652.3   0.6  8.4e-200  7.5e-196       5     621 .]     253     831 ..     240     831 .. 0.95

  Alignments for each domain:
  == domain 1  score: 652.3 bits;  conditional E-value: 8.4e-200
                 HHHHHHHHHHHH...T....TTTS--.-..........HHHHHHHHHHHHHHHHHHHHHCC....CTTSSSS-HHHHHHHHHHCTTBESSSCBSSTT-- CS
       Nic96   5 dkqlleaWkllkelvgekpevkerefaksrqsaelrkrivegarryLEkqfleyveeliaknpreaqlggvpsvvnkvraFvrvrlakknlaedaglld 103
                 ++qlle+Wk+++                   s++  k+ ++ +r+yLE qfl+yv++l ++    a ++g+p+++nkvr+F++ +l++ + ++++ +l+
  CCD23246.1 253 NRQLLESWKIIE-------------------SIKDPKNTIKASREYLEVQFLDYVDALSKN----AISEGLPTNTNKVRSFIDTKLKNTDGSWKIANLT 328
                 444444444444...................444456899*******************99....8999****************************** PP

                 EETTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT.-TTS-HHHHHHHHHHHT--CCC-S CS
       Nic96 104 evngeplWaliyylLRaGdldeAlevvnenkeafrkldrsfaaylkayassedrrlpseleerlkleYnqrirnasedsDpykkavYkiigrcdlsrkn 202
                 ++ng p+Wa i+ylLRaG+++eAl+++ +n++ f+k+++sf++y++ay+ss++++lp e+ ++l++e+nq+i+n s ++Dpy+ avYkiigrcdl+r+n
  CCD23246.1 329 VINGLPIWASIFYLLRAGLMQEALDLAMTNSSGFKKIEQSFLTYFQAYISSPENKLPTEFATKLHTEFNQHIKN-SLNGDPYRLAVYKIIGRCDLTRRN 426
                 **************************************************************************.9989******************** PP

                 -T.TC--SHHHHHHHHHHH---TTSSSSS.SS----HHHHHHHHHHH-GGGCTT-.....HHHHHHHTT-HHHHHHHHHTT-HHHHHHHHHHHHHTT-- CS
       Nic96 203 lhqevaktieDwlWlqLslireddrdsselasekytledLqklilkyGeshFnaseqpllYfqvllLtgqFEaAieylyresrvdAVHlAIaLaeygLL 301
                 ++  v+ ++eDw+W +L li+ed   ++ +++eky led+q++il+yG+s F+++     Y+ vl+L+g++E Ai+y+y+ +++dAVHlAI+La+ +LL
  CCD23246.1 427 IS-LVTLSLEDWIWYHLKLIKEDVI-DDGPIYEKYHLEDFQNIILSYGPSRFTNY-----YIPVLILSGLYEVAIDYAYNLNEMDAVHLAIGLANKKLL 518
                 **.*******************999.6889************************7.....*************************************** PP

                 ----....------..-------HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-S...CCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHH CS
       Nic96 302 rvsdskvseellsveteskrrinfarligqYtrkfeatdprealeYlylirllkdlegkeqrelchealrelvletrefalLLGdirsdGtripGliee 400
                 +++++ +s+ l+ +e+  +r++nfa+l+g+Yt++f+ +dpr+a eYl+li+ ++d+ +   +++chealrelvl+t+ef +LLG+i++dGtripG++ee
  CCD23246.1 519 HITTN-ISDTLIAIED-GRRKVNFAKLLGNYTKSFKFSDPRIATEYLILIAITDDPAE---IKICHEALRELVLDTKEFGILLGKINRDGTRIPGVLEE 612
                 ****9.8877777766.56************************************666...9************************************* PP

                 TGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSSSSSSST....TTTSHHHHHHHHHHHHTTSHHHHTT CS
       Nic96 401 rlkliklddeeeflkkiieqaAreaeekgrledAilLydlageydkvlellnrlLsqvlstqplkprsererlqqeedpveLaekileryesnakisek 499
                 r++l++l+de+efl+ i+eqaA++a+e+gr++d++lLy+la+eyd v++++n lL+++l  + l++    ++ ++e++pv La k++++y++n +i +k
  CCD23246.1 613 RQDLLYLNDEKEFLRVITEQAAHKADEDGRTQDSLLLYQLAEEYDIVMSIVNGLLGSLLGGSDLTQPLFTKDDNSETNPVLLASKLISIYNNNLEIAKK 711
                 ***********************************************************986666666666666889********************** PP

                 S-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S---HHH...HHHHHHCGCCS-HHHHTTHHHHHHHHHHHHHHHHHHHHSTT---TTHHHH CS
       Nic96 500 vsaknretcelLldlleifdlyeagqweealdeiekldllPlaegdleevrekveefkslseevakvipdlLlatmtclskqyeqlknkqfeseskedk 598
                 ++akn+etc lLl++++i++ y ++qw+ al +iekldllP+  +d ++ r+k+++f+ ++e+++k+ip+lL++t+tc+sk+++ l++++++s +k+++
  CCD23246.1 712 IHAKNKETCLLLLQIADIRKSYAENQWQYALGQIEKLDLLPF--TDGQDARRKAQAFSGFDEPIVKCIPSLLIMTLTCVSKLVNVLNQSDYKSVTKSQQ 808
                 ******************************************..66689********************************************9***** PP

                 HHHHHHHHHHHHHHHHHGCCCS- CS
       Nic96 599 leelrqkakalmtfagmikyrmP 621
                 +e l++++k+++++ag+i+++mP
  CCD23246.1 809 IEFLKNISKNCIVYAGIIQFKMP 831
                 **********************9 PP

>> TFB6  Subunit 11 of the general transcription factor TFIIH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   4.4e-05       0.4      13      61 ..     789     842 ..     783     845 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.4e-05
        TFB6  13 dklvdvlWvS....gtpslqipyLlniaselldylekfpps.pratfklLrkLD 61 
                 +klv+vl +S     t+s qi++L ni+++++ y    +++ pr+t++ L +LD
  CCD23246.1 789 SKLVNVLNQSdyksVTKSQQIEFLKNISKNCIVYAGIIQFKmPRETYSTLIRLD 842
                 678888865544449*******************99888763788********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 5857.89
//
Query:       CCD23247.1  [L=158]
Description: hypothetical protein NDAI_0B02120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-21   75.8  10.7    4.9e-21   74.3  10.7    1.8  1  PPI_Ypi1    Protein phosphatase inhibitor
     0.0012   18.6   4.1     0.0014   18.4   4.1    1.1  1  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
     0.0023   17.6   9.7      0.003   17.2   9.7    1.2  1  SR-25       Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
       0.01   16.5   5.2       0.01   16.5   5.2    1.8  2  IMUP        Immortalisation up-regulated protein
        7.9    4.6   9.3        8.1    4.6   9.3    1.1  1  CDC45       CDC45-like protein


Domain annotation for each model (and alignments):
>> PPI_Ypi1  Protein phosphatase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3  10.7   1.4e-24   4.9e-21       2      59 ..      27     107 ..      26     114 .. 0.84

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 1.4e-24
    PPI_Ypi1   2 LrLrg.......eekkkkkkkskrrVrWeedvvDNEgmnkkksKiCCIyhkprefdes..................Ssessss 59 
                 L+L++       + +++++++++++VrWee++vDNE++n+kk+KiCCI+h+++e+de+                  S  ssss
  CCD23247.1  27 LQLHTsepsinrRIERTSHQSTRPSVRWEEGTVDNENLNRKKTKICCIFHPQEEIDEDgegrysdhehpppspsssS--SSSS 107
                 666666666666678999*******************************************************8642..2222 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   4.1   3.9e-07    0.0014      81     169 ..      48     139 ..       9     151 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.9e-07
                 -----------------------...----..-------------------------------------------------.----------- CS
  Cwf_Cwc_15  81 eekekkeeeeeeeeeeakrrkee...lleeareidaddedseeeeeeeeeesdddsdsdsdddddedetaeLlrELekikr.eraeekerker 169
                 ++ + + ee + ++e+ +r+k++   + + ++eid+d e + +++e+    s ++s+s+s+++++ d+++ L  E  + +r er   k  ker
  CCD23247.1  48 TRPSVRWEEGTVDNENLNRKKTKiccIFHPQEEIDEDGEGRYSDHEHP-PPSPSSSSSSSSSSSESDNDNRLNPEDRRQRRiERRRRKLNKER 139
                 22222333333334445555555556666678*****99987655444.44444555556666667788888887655444355555555554 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   9.7   8.3e-07     0.003      65     114 ..      95     138 ..      30     153 .. 0.34

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.3e-07
       SR-25  65 ssssssssssssssssssssssdd.....rkkrgkkkdkkkkkkkkkkkkkkekk 114
                       s sssssssssss s++d     +       d+++++ ++ +++k +k 
  CCD23247.1  95 PPP---SPSSSSSSSSSSSESDNDnrlnpE-------DRRQRRIER-RRRKLNKE 138
                 112...222222222222333333223321.......222222222.22222222 PP

>> IMUP  Immortalisation up-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.88   3.2e+03      40      40 ..      36      36 ..       4      70 .. 0.53
   2 ?   16.5   5.2   2.9e-06      0.01      43      73 ..      89     119 ..      76     143 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.88
        IMUP 40 a 40
                +
  CCD23247.1 36 I 36
                2 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2.9e-06
        IMUP  43 kprhghgkssssdsssssssssdsdaeakph 73 
                    h h   s s+sssssssss+sd++ + +
  CCD23247.1  89 YSDHEHPPPSPSSSSSSSSSSSESDNDNRLN 119
                 4445555567777777777777777776543 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   9.3    0.0023       8.1     130     200 ..      78     140 ..      32     158 .] 0.39

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0023
       CDC45 130 eesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee...sddddersrkrrrsepsakk 200
                 +         ee d+d e++ +++e+   + ++++++s+++  s+sd++++   +d++++r ++rrr+ +++++
  CCD23247.1  78 Q---------EEIDEDGEGRYSDHEHPPPSPSSSSSSSSSS--SESDNDNRlnpEDRRQRRIERRRRKLNKERS 140
                 2.........2222222222222222222222222222222..2222222222333333333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1298  (0.0723967); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1341.58
//
Query:       CCD23248.1  [L=306]
Description: hypothetical protein NDAI_0B02130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-33  113.5   0.9    9.3e-33  112.7   0.1    1.8  2  JAB         JAB1/Mov34/MPN/PAD-1 ubiquitin protease
    1.3e-10   41.7   1.7    2.4e-10   40.8   1.7    1.5  1  MitMem_reg  Maintenance of mitochondrial structure and functi
    1.5e-07   31.2   0.0    3.2e-07   30.1   0.0    1.5  1  Prok-JAB    Prokaryotic homologs of the JAB domain


Domain annotation for each model (and alignments):
>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   0.1   1.6e-36   9.3e-33       4     117 ..      25     134 ..      22     135 .. 0.96
   2 ?   -2.0   0.1      0.58   3.5e+03      72      82 ..     239     249 ..     221     272 .. 0.54

  Alignments for each domain:
  == domain 1  score: 112.7 bits;  conditional E-value: 1.6e-36
                 CEEEEEHHHHHHHHHHHHHHHHHTS--EEEEEEEESSSEEEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHCTT.SEEEEEEEESSSS-SS- CS
         JAB   4 qavhleslvllkildhalrtekeeeevmGlliGelnddttveitnvfalpfeetekdvdavsldqeylekksellkklrgr.ervvGWYhshpditvwl 101
                 ++v ++s +llk+l+h + +     evmGl++Ge+ dd+t+++++vfa+p+++t  +v+av+ + +   k++++lk++ gr e vvGWYhshp++++wl
  CCD23248.1  25 ETVYISSVALLKMLKHGRAGVPM--EVMGLMLGEFVDDYTIDVVDVFAMPQSGTGVSVEAVDDVFQ--AKMMDMLKQT-GRtEMVVGWYHSHPGFGCWL 118
                 79*********************..********************************999999999..*********9.777***************** PP

                 -HHHHHHHHHHHHHST CS
         JAB 102 sevdvrtqalyqrmde 117
                 s+vdv+tq++++++++
  CCD23248.1 119 SSVDVNTQKSFEQLNP 134
                 ************9987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.58
                 HHHHHHHHHHC CS
         JAB  72 ekksellkklr 82 
                 e+ ++++k+ +
  CCD23248.1 239 EATQKMVKIAA 249
                 33333333332 PP

>> MitMem_reg  Maintenance of mitochondrial structure and function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   1.7   3.9e-14   2.4e-10       1      99 [.     169     299 ..     169     306 .] 0.88

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 3.9e-14
  MitMem_reg   1 Eaeei..gvehllkpsiqdasstlstglnrqyyslki.......................................lqerldlikdYlkkveege.lpv 57 
                 E++++  + + ++k +iq    +l++glnr+yysl+                                         q++++ + +Y k++ee++ l+ 
  CCD23248.1 169 EPRQTtsNSGLMNKANIQ----ALIHGLNRHYYSLNVdyhrtsdetrmlmnlhkeqwqsglkacdyeekettnleaTQKMVKIAAQYSKRIEEEKdLTE 263
                 99****************....**********************************************************************9986666 PP

  MitMem_reg  58 nheilrnlqkllnllP..hleteelekefnvetnDvllvvyLas 99 
                  ++++r+++k++   P  hl++     +  + ++D  ++v+ +s
  CCD23248.1 264 AQQATRYVGKQD---PkkHLSA-----MAETTLEDNIVSVLTSS 299
                 677*********...9777777.....44455555555554444 PP

>> Prok-JAB  Prokaryotic homologs of the JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   5.3e-11   3.2e-07       3      92 ..      32     126 ..      30     150 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 5.3e-11
    Prok-JAB   3 svlsalvaharrahpeEtcGlllgkeseseevivvplvnewsn..rfeipdpedslarlkf...earerglevvgiwHSHpggsarPSetDrrda 92 
                  +l ++++h r+  p E  Gl+lg+  ++  + vv++  ++++   +++++ +d +++ ++   + + r++ vvg +HSHpg +   S+ D ++ 
  CCD23248.1  32 VALLKMLKHGRAGVPMEVMGLMLGEFVDDYTIDVVDVFAMPQSgtGVSVEAVDDVFQAKMMdmlKQTGRTEMVVGWYHSHPGFGCWLSSVDVNTQ 126
                 57889*********************77788888887755555998888889999999988999*****************99877777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1207  (0.0673211); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2291.90
//
Query:       CCD23249.1  [L=438]
Description: hypothetical protein NDAI_0B02140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-06   28.7   0.5    3.9e-06   27.1   0.5    1.8  1  zf-UBP         Zn-finger in ubiquitin-hydrolases and other pr
    2.5e-06   27.2   4.0    5.3e-06   26.1   4.0    1.5  1  UCH            Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
       0.46   10.8   3.0        6.9    7.0   0.0    2.5  2  HTH_Tnp_Tc3_2  Transposase


Domain annotation for each model (and alignments):
>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.5   6.6e-10   3.9e-06       1      48 [.      50      96 ..      50     103 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 6.6e-10
                -TTTH--.SSEEEETTT--EEE-TTTT-HHHHHHHHH---EEEETTT- CS
      zf-UBP  1 CseCnsenknlWlCLkCghvgCgrksnghalkHyeetrHplavdlstl 48
                Cs+  s+  n+++CL Cg++++g ++++ a  H  +++H l+++l t 
  CCD23249.1 50 CSVTLSK-LNVYCCLVCGKYFQGHNEKSPAFLHSINNNHNLFFNLYTS 96
                7777777.89*********************************99775 PP

>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   4.0   8.9e-10   5.3e-06       9     187 ..     159     364 ..     151     421 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 8.9e-10
                 THHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH...SH-CCEE--HHHHHHHHHHSGGGTSSSTCEHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   9 tCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell...kskskavsPkklkktlsklaksfsgykqqDaqEfl 104
                    +n +l +L+++ +lrd+ll        s  + e            +++ l++++++++      +++vs +++  +l   +    +  ++D  ++l
  CCD23249.1 159 LDHLNVILLLLSHVTPLRDWLLL-------SDVSAE----------STFVQGLSNIVRKIWspyL-FKNHVSADEFADFLTVQNLI--NKLRNDPADLL 237
                 55689999999999999988877.......222222..........2499***********9962.56899999999999655544..78899999*** PP

                 HHHHHHHHHHHCC...............................HCCCHHHHHHCCCTTSHHHHHH-EEEEE........................... CS
                 xxxxxxxxxxxxx...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
         UCH 105 aflLdqlhedlnr...............................evaeekwkkhlkrndslitdlfegqlks........................... 145
                   +L+ +  d+++                               +                                                      
  CCD23249.1 238 IWMLNFMAFDSKAlkrilhescqgkinfntrktsqilpfwklslD--------------------------Lpvnsilkegqnannlhhvdlhdllrkf 310
                 ****99999999966666555555555555555555555544440..........................1444455555555555555555566666 PP

                 .........EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGG CS
                 .........xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx RF
         UCH 146 .........klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssy 187
                          + +l++lP++L++h++Rf ++s+   k++++  v++p  l+l+++
  CCD23249.1 311 tskgnsnskNYSLEKLPHFLVLHYNRFDFKSEypvKNRNQILVQYPSVLKLKEV 364
                 66689999999**********************888888888999999998842 PP

>> HTH_Tnp_Tc3_2  Transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.0     0.022   1.3e+02      11      46 ..       5      41 ..       2      43 .. 0.92
   2 ?    7.0   0.0    0.0012       6.9       2      22 ..     370     390 ..     369     406 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.022
  HTH_Tnp_Tc3_2 11 dPritlreLanelkee.GksvsreTirrrLrkaglkk 46
                   ++r +  ++ +e++++  ++ s+e  rr L++ +l+k
     CCD23249.1  5 KRRSSRSNIREESSKKiKQNLSDESKRRLLQTVNLHK 41
                   5899999***************************997 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0012
  HTH_Tnp_Tc3_2   2 rrIvrlvrkdPritlreLane 22 
                    +++v +v+++P i+ r+La++
     CCD23249.1 370 ANVVHYVKRNPNISKRQLAQD 390
                    58999*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3374.05
//
Query:       CCD23250.1  [L=527]
Description: hypothetical protein NDAI_0B02150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-54  184.7   0.0    2.3e-54  184.3   0.0    1.1  1  Peptidase_M24  Metallopeptidase family M24
    3.7e-25   88.1   0.0    9.4e-25   86.7   0.0    1.7  1  AMP_N          Aminopeptidase P, N-terminal domain
  ------ inclusion threshold ------
      0.053   14.1   0.2       0.14   12.8   0.2    1.7  1  MCM_N          MCM N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.3   0.0   3.8e-58   2.3e-54       3     209 .]     232     492 ..     230     492 .. 0.90

  Alignments for each domain:
  == domain 1  score: 184.3 bits;  conditional E-value: 3.8e-58
                    HHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTEEEEEEEEE.E CS
  Peptidase_M24   3 irkaariasaaleavleaikpgvterelaaeieattlkrhgarglafppivasgenaavlhytpndrvlkegdlvlidagaeydgyasDitrTv.l 97 
                    +r aa+i+++++ av++a+    +e++++ae+e++   r++a  l+++pi++sg+ + +lhy++n++ l+ +  +lidagae+++y++D+tr + +
     CCD23250.1 232 LRHAAKITDNCHLAVISALPIELNEYQVQAEFEYH-AGRQNAHALGYDPICCSGPACGTLHYVKNSEALHGKVSFLIDAGAEWKNYTTDVTRCFpI 326
                    79***************99999***********88.78889*****************************************************99 PP

                    CSSGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHT....TB................CCGBSSCSEEEESSSSSEE......... CS
  Peptidase_M24  98 vGkftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesa....gl................akffphglGHgvGlevhde......... 164
                     Gkft+e+re+y+avl++q + ++ ++pG++++e++   ++vl ++    g+                  f+phglGH +Gl+vhd+         
     CCD23250.1 327 SGKFTKEHREIYDAVLDMQTQTMQNIRPGASWDELHLLSHKVLIKHllkiGIfrkefsaeeifrrrvtCVFYPHGLGHLMGLDVHDVagnpnyedp 422
                    99*******************************************867665478888999999**99999****************9775555544 PP

                    EEEESSSTTCSSB--TTBEEEEEEEEEEET...TT.......................EEEEEBEEEEEES CS
  Peptidase_M24 165 gpsvsresndgrkleeGmvftiEpgiyfap...ge.......................ggvriedtvlvte 209
                     p+ ++  + +r+lee+mv+t Epg+yf++    e                       ggvried++lvt+
     CCD23250.1 423 DPYFKY-LRLRRTLEENMVLTDEPGCYFNEfliKEllekyperlevvdrdilnkymyiGGVRIEDDILVTK 492
                    444443.3479****************877666115666777788899999999***99**********96 PP

>> AMP_N  Aminopeptidase P, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   1.6e-28   9.4e-25       2     116 ..      70     185 ..      69     190 .. 0.94

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 1.6e-28
                 HHHHHHHHHHS....-SSEEEEEE-----EEET.TEE------HHHHHHH----SS-EEEEEESSEEEE...EEEE----HHHHHHH----HHHHHHHH CS
       AMP_N   2 aerRkrlleal....pensvvilaagkekyrsg.dveypFrqnsdFlYltGfnepdavlvlekeedkkehkstLfvprkdpekelWdGarlgleeakel 95 
                 +e++k++++++    p ns+v++a+++++  ++ d+ +pFrq+++F+Yl+G++ p++ +++    + k++k+tLf+p  d ++ +W+G ++g++ea ++
  CCD23250.1  70 NEKVKKIFQSVnldlPVNSAVFIAGNEVEPIKYcDISHPFRQERYFYYLSGVDVPGSSILF----NMKSNKLTLFLPLVDDDDVMWSGMPMGINEALNT 164
                 67788888888888899***************99***************************....78999***************************** PP

                 HT-SEEEEGGGHHHHHHHHHT CS
       AMP_N  96 fgvdeaepidelesalakllk 116
                 f+vde+ + d+++++++k l+
  CCD23250.1 165 FDVDEVLYADKINEVFEKELT 185
                 ****************99876 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   2.3e-05      0.14       8      71 ..     162     220 ..     158     260 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.3e-05
       MCM_N   8 LeefkddsededgekkYrdqlqemaerekttLevdlddLaaf.deeLaeailenpkeylplleea 71 
                 L++f      + +e  Y d+++e+ e+e t + v  +dL +  d+ + e++++  k++ ++l+ea
  CCD23250.1 162 LNTF------DVDEVLYADKINEVFEKELTGFKVFTTDLDNIhDNSIKEKLVSGDKRFFKALDEA 220
                 5566......456889*************************9788******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3603.54
//
Query:       CCD23251.1  [L=477]
Description: hypothetical protein NDAI_0B02160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.6e-88  294.7   0.0    1.2e-87  294.3   0.0    1.1  1  Citrate_synt  Citrate synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.3   0.0   6.7e-92   1.2e-87       1     361 []      63     463 ..      63     463 .. 0.91

  Alignments for each domain:
  == domain 1  score: 294.3 bits;  conditional E-value: 6.7e-92
                   GGTTEEEEEESSEEEETTTTEEEETTEEHHHHH........HHHS-HHHHHHHHHHSS---HHHHHHHHHHHHCT...TS--HHHHHHHHCSSTTS- CS
  Citrate_synt   1 glrgvaaleteisevdgekgelrYRGydieeLa........eekssfeevaylLltgelPtkeelkefkeelaea...rklpekvlealealpkdah 86 
                   g+rg +++ +e s+vd++k  ++++G +i e +         +++  e + + L+t+++Pt++++++++eelae+   ++ pe + + ++ lp d+h
    CCD23251.1  63 GMRGNKSIFWEGSTVDPNK-GITFHGKTIGE-CqqqlpgdeFGYFHPEAILWYLMTKQIPTSQQVQHLTEELAERgspKNFPELTSKIIDMLPPDTH 157
                   79999**********9555.49*********.779999988448889999999*********************6444567777777777999**** PP

                   HHHHHHHHHHHHHHHSTT.......CTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.S.--.---TTSSHHHHHHHHHHS............. CS
  Citrate_synt  87 pmavlraavsalsaddee.......seakeeseeaalrdalkliAklptiaaaiyrarlg.repl.epddklsyaenflymlrg............. 161
                   pm++l++++++ls +++          +k++++e++l+d+l+li+ lp ++a iy+  ++ ++pl e + k++++ n++++l g             
    CCD23251.1 158 PMTQLAIGLASLSRNSKFasnyqrgLISKDHYWEDTLEDSLNLISFLPILTAKIYSKLVNgGKPLgEFSVKNDWTLNICSLL-Gmsngvhssnhcnl 253
                   ***********88777667667668888888************************99987359999988779********99.44677999999999 PP

                   .S---HHHHHHHHHHHHHHS--SS.SHHHHHHHHHHTTT--HHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHSSGG........GHHHHHHHHHHTT CS
  Citrate_synt 162 .kkpdeeeaklldlalvlhaDHel.naSTfaarvvaStladlysaiaagigalkGplhgganeavlkmleeigsaev.......eveeylekvlake 249
                    ++ ++++  l++l+  +h+DHe+ n+S++a+++v S+l+d+y ++++gi++l+Gplhg a ++v+++l e++s+ +       e+eeyl+++l++ 
    CCD23251.1 254 nNEQSKDFLSLMRLYTGIHVDHEGgNVSAHATHLVNSALSDPYLSYSSGIMGLAGPLHGLAAQEVVRFLVEMNSR-IsspqntgEIEEYLWNILNS- 348
                   988899******************************************************************555.5689999************8. PP

                   TS--TTBC-SSSSS--HHHHHHHHHHHHHHTCHTHHHHHHHHHHHHHHHHHHHHCHH.GCT-EB-THHHHHHHHHHTT--GGG.HHHHHHHHHHHHH CS
  Citrate_synt 250 kerlpGfGHrvykksDpRakilkelaeelaeekgkdpllklaeeleevapevlkeke.eknlypNvDfysgvlyralgipeel.ftvlfaisRvaGw 344
                   k+++pG+GH+v++  DpR++ + ++a++   e ++d+++ l+++l+ v+p++lke+   kn++pNvD +sg+l++++gi++ l ftv+f++sR++G 
    CCD23251.1 349 KKVIPGYGHAVLRIPDPRFTTMLKFAQSRTTEFENDENVILMQKLSTVVPDILKEHGkCKNPFPNVDSASGILFHHFGIKDLLfFTVIFGCSRSIGP 445
                   6*****************************************************999************************878************* PP

                   HHHHHHHH.HT------E CS
  Citrate_synt 345 lAhileql.adnkiiRPr 361
                   l ++++ +     i+RP+
    CCD23251.1 446 LTQLVWDRiYGLPIERPK 463
                   ******877777899996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 3211.06
//
Query:       CCD23252.1  [L=239]
Description: hypothetical protein NDAI_0B02170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2453  (0.136817); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 1611.24
//
Query:       CCD23253.1  [L=404]
Description: hypothetical protein NDAI_0B02180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-40  138.4   2.9    2.4e-40  138.4   2.9    1.7  2  Hat1_N           Histone acetyl transferase HAT1 N-terminus
    7.9e-06   26.1   0.0    2.2e-05   24.7   0.0    1.8  1  Acetyltransf_1   Acetyltransferase (GNAT) family
     0.0078   16.6   0.0      0.018   15.4   0.0    1.7  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.061   13.3   0.0       0.13   12.2   0.0    1.6  1  Acetyltransf_10  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Hat1_N  Histone acetyl transferase HAT1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   2.9   5.3e-44   2.4e-40       1     160 []      11     167 ..      11     167 .. 0.94
   2 ?   -2.9   0.1       1.6   7.3e+03      92     106 ..     369     385 ..     335     395 .. 0.53

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 5.3e-44
                 GEEEHHHHEEEEEESSS.EEE.........E--S--HHHHTTTTEEESEES-EEEEEEETTT--EEEEEE-SEE--.STTS-.-HHHHHHTTS-T.... CS
      Hat1_N   1 wtvdanealkiklvrseedleeeektksesfhPeftyqiFgeeetIfGYkdLkInlyfaagslkpylkvsyseklkdksktekdvekklkeflpeea.. 97 
                 w++++++ lki+lv+++ +++         f+P fty+iFg++e+I GY+dL ++l f++ +++p+l+v+ys+kl++++ +  dve++l ++lp++   
  CCD23253.1  11 WISSSKDSLKISLVSKDGAVQ---------FAPIFTYPIFGDAEQIVGYQDLLVHLAFDSITFRPFLNVKYSTKLDTEDID--DVEGELLKVLPSDKde 98 
                 899*************99988.........*********************************************776654..************9999 PP

                 ..ES-HHHHHHHHH.HHH.H--GGSEE..EEEETTEE..EEEEEEES.SSHHHHHHHHHHTHHHHHHST CS
      Hat1_N  98 ..fkskeeFekale.ekaksfkppGel..ihsytrekkefeiykasl.adpavrelhrrlqifvllFIE 160
                   +k+++++ + +e e+++sfk p ++  +++y+ +k++f +yk++l +d+++ +lhrr+qif l+FIE
  CCD23253.1  99 viLKDEAKWVDMFEfEQKNSFKLPEDKykVNEYEIDKEHFVVYKMKLsDDEKFLKLHRRIQIFSLFFIE 167
                 99**********************665459******999********66788****************9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.6
                 TS-T....ES-HHHHHH CS
      Hat1_N  92 flpeea..fkskeeFek 106
                  + e++  ++  ++F+k
  CCD23253.1 369 TIKEDYerITCSSKFKK 385
                 33444444444444444 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   4.8e-09   2.2e-05      21     102 ..     171     261 ..     144     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 4.8e-09
                     HHHHHHHHHSTTCEEEE.EEETTEEEEEEEEEEEET............TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEE CS
  Acetyltransf_1  21 eeefeesfsleaegllv.aeedgeliGfisllkipd............ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlave 102
                     + + e++   + + +++  +e  +  G++++++++             +k  +a + ++ + p y+gkG Gs+L++a+ +  +++ + + +++ve
      CCD23253.1 171 YIDEEDF---NWDIYWLfNKEKKQCMGYATAYMYWKylggkdfdeskePKHYRAKVSQFLILPPYQGKGHGSKLYQAIFKNWLSNDLVR-EFTVE 261
                     3333444...33444443666688**********999*****************************************98888886633.44454 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.1e-06     0.018      24      49 ..     202     247 ..     169     284 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.1e-06
                     S..................TCTEE...EEE-GGGTTSSHHHHHHHH..T CS
  Acetyltransf_7  24 d..................aeitr...laVdpeyrgkGiGraLlea..a 49 
                     +                  a   +   + ++p y+gkG G++L +a  +
      CCD23253.1 202 WkylggkdfdeskepkhyrA---KvsqFLILPPYQGKGHGSKLYQAifK 247
                     44444444445555442222...255699***************97331 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.9e-05      0.13      53      92 ..     222     261 ..     165     266 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
  Acetyltransf_10  53 hisllfVdpeyrgqGigkaLleaveee.aekdgikleltvn 92 
                      ++s + + p y+g+G g++L +a+ ++ +++d  + e+tv+
       CCD23253.1 222 KVSQFLILPPYQGKGHGSKLYQAIFKNwLSNDLVR-EFTVE 261
                      8999********************99967666655.88886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2841.13
//
Query:       CCD23254.1  [L=233]
Description: hypothetical protein NDAI_0B02190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-58  196.0   0.0    6.4e-58  195.8   0.0    1.0  1  EAP30         EAP30/Vps36 family
  ------ inclusion threshold ------
      0.071   12.7   0.3        0.1   12.2   0.3    1.2  1  Cut8          Cut8, nuclear proteasome tether protein
      0.089   12.7   0.2       0.39   10.6   0.2    1.9  2  Phage_Mu_Gam  Bacteriophage Mu Gam like protein


Domain annotation for each model (and alignments):
>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.8   0.0   1.1e-61   6.4e-58       6     236 .]       6     215 ..       4     215 .. 0.94

  Alignments for each domain:
  == domain 1  score: 195.8 bits;  conditional E-value: 1.1e-61
       EAP30   6 l.qrreqtaaeyqdlgaellaealqdleallakfkesLvklaekhkakiksdpafraqftkmcaslGvdplsskkseslgflellglgdfyyeLavqiv 103
                 l q   +++++y+d ++++l+++  +l+++l+ f+++L  +a+kh+++++++p+fr +ft+mc+s+G++pls  + +++   +l++++dfyye++v+++
  CCD23254.1   6 LaQFDDKQREKYEDISSNILQKQTLELRDQLKIFQDRLTIFANKHNEELRENPEFRLKFTRMCSSIGINPLSLFD-KDK---HLFTVNDFYYEICVKVI 100
                 44556789999************************************************************5442.333...58*************** PP

       EAP30 104 evclatraengglisleelyalvnrarggvalvspdDllraiekllvlgsglsvlqvggkkvvrSvptelntdqvevlevakrlvsllaekssgggvta 202
                 e+c++t++ ngg+is +el + ++  r     v   Dl++ai++ll l +g++v+++++kk++rSvp+el +dq+++le+++ l         g + ta
  CCD23254.1 101 EICRQTKDMNGGVISFDELEKCFKHLR-----VGRPDLEKAINMLLALDGGFEVFEIRQKKFIRSVPNELTDDQTKILEICSIL---------G-YATA 184
                 *************************99.....88**************************************************.........5.9*** PP

       EAP30 203 selaeeeenlgwsvarakeaLeelereGllwvDd 236
                 s l   ++nl+w+  r+k++++ ++++GllwvD+
  CCD23254.1 185 SLL---KANLNWTNVRSKAVIDGMVANGLLWVDK 215
                 ***...899************************6 PP

>> Cut8  Cut8, nuclear proteasome tether protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   1.7e-05       0.1     126     234 ..      33     138 ..      12     144 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.7e-05
        Cut8 126 kphLleFlncLsDfilnflppnetnlstsLkfldeatkl.vhkLPnfdnqshnyykdkcyeqlsnawltvikeaakd.gggllkkleleeweekLkkhn 222
                 + +L+ F + L  f+++  +   +n++  Lkf  ++ ++ ++ L  fd+ +h  + ++ y ++    +++ ++ +kd  gg+   ++ +e+e+ +k++ 
  CCD23254.1  33 RDQLKIFQDRLTIFANKHNEELRENPEFRLKFTRMCSSIgINPLSLFDKDKHLFTVNDFYYEICVKVIEICRQ-TKDmNGGV---ISFDELEKCFKHLR 127
                 678899999999999999999999************************************************7.66625555...55555555555544 PP

        Cut8 223 eesegklqkvle 234
                     + l+k+++
  CCD23254.1 128 VGRPD-LEKAIN 138
                 44444.444444 PP

>> Phage_Mu_Gam  Bacteriophage Mu Gam like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   6.4e-05      0.39      34      75 ..      23      63 ..       6      98 .. 0.86
   2 ?   -0.7   0.0       0.2   1.2e+03      84     124 ..     159     196 ..     156     211 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.4e-05
                  HHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH-..-----EE CS
  Phage_Mu_Gam 34 ekleaeleplkkeieylesllkqYaeankdeLfkdgktKslk 75
                  + l++++ +l ++ + +++ l+ +a ++ +eL ++++ + lk
    CCD23254.1 23 NILQKQTLELRDQLKIFQDRLTIFANKHNEELRENPEFR-LK 63
                  4578999999**************************998.44 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.2
                   -------.--TT--HHHHHHHHHCT-GCC--------HHHH CS
  Phage_Mu_Gam  84 rkstpkvkkrdkekeelLealkelgfkefIkvkeevnkeaL 124
                   r  ++++ ++d++k  +Le +  lg+  +   k  +n+++ 
    CCD23254.1 159 RSVPNEL-TDDQTK--ILEICSILGYATASLLKANLNWTNV 196
                   6667774.777666..8888888888666666788888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1668.65
//
Query:       CCD23255.1  [L=439]
Description: hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-32  110.3   0.0      1e-28   99.9   0.0    2.5  2  PseudoU_synth_1  tRNA pseudouridine synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00018       3.3      44     107 ..     101     205 ..      21     206 .. 0.69
   2 !   99.9   0.0   5.8e-33     1e-28       1     108 []     229     336 ..     229     336 .. 0.97

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00018
  PseudoU_synth_1  44 l.............................vvtvkgsgFldhqVRamvgvl.fav.........gqgklspedvk..ellnakkrkkiavetap 96 
                                                    +++++  g++d++V am +v+ ++v          + + +p +++  ++ln+ ++++i v  ++
       CCD23255.1 101 QkeatplptvegkiieamytsklvpsmvpqEYSFSRCGRTDKGVSAMSQVIsLKVrsnltdeeqKRPENDPREIRyvHILNQLLPDDIRVSAVC 194
                      0444444444444444445555555666668999999**************8888888888666555666666542246777777777777776 PP

  PseudoU_synth_1  97 avglvlfhvrY 107
                       ++   f++r+
       CCD23255.1 195 LRPPEGFDARF 205
                      66666666666 PP

  == domain 2  score: 99.9 bits;  conditional E-value: 5.8e-33
  PseudoU_synth_1   1 AakelvGthdfgsfckqkqek..kntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspedvkellnakk.rkkia 91 
                      A+ +++G hdf++fck + +k  +n  rti++a+i +v+g+    +++++ g++Fl+hqVR+m++ l++vgqg ++++ ++++l+++k ++k+ 
       CCD23255.1 229 ASSKYEGDHDFRNFCKLDGSKqiTNHRRTIISAKILHVEGN---IYCFDLVGRAFLWHQVRCMMANLLLVGQGLEEVSLIEDMLDIEKtPQKPI 319
                      7889*****************99*************88888...89************************************************ PP

  PseudoU_synth_1  92 vetapavglvlfhvrYd 108
                      + +a++ +l l++++++
       CCD23255.1 320 YDMADDLPLLLYDCKFP 336
                      ****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3125.08
//
Query:       CCD23256.1  [L=706]
Description: hypothetical protein NDAI_0B02210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-95  318.4  17.9    7.4e-95  317.9  17.9    1.1  1  Sulfate_transp  Sulfate permease family
    6.4e-19   67.7   0.0    1.3e-18   66.8   0.0    1.4  1  STAS            STAS domain
    0.00077   19.8   6.6    0.00077   19.8   6.6    2.8  2  MFS_MOT1        Molybdate transporter of MFS superfamily
  ------ inclusion threshold ------
      0.049   14.0   0.0       0.13   12.6   0.0    1.8  1  STAS_2          STAS domain
       0.15   11.7   0.1       0.32   10.7   0.1    1.5  1  IstB_IS21       IstB-like ATP binding protein
        2.2    8.4   5.9       0.32   11.1   0.1    2.2  2  UPF0242         Uncharacterised protein family (UPF0242) N-te


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.9  17.9   2.5e-98   7.4e-95       1     363 [.      74     449 ..      74     463 .. 0.93

  Alignments for each domain:
  == domain 1  score: 317.9 bits;  conditional E-value: 2.5e-98
  Sulfate_transp   1 lkgDliaGitvallaiPqalayal.laglppiygLyssvvpqlvyalfGtsrqlavGpvavlslivgeiiakv.aeeepekgieiattltllaGv 93 
                     ++gDl aG++va+++iP+al+ya+ la+++p++gLys  +++++ya+fG+++q++vGp++++sl+vg++++ +  ++e ++ i i++++t+++G 
      CCD23256.1  74 FLGDLTAGLSVASFQIPLALSYATsLAHVEPLSGLYSLAITPFIYAIFGSVPQMIVGPESAISLVVGQAVEPMvNHDERISTISISIVVTFISGS 168
                     899*********************************************************************96778899*************** PP

  Sulfate_transp  94 iqvllGllRLgflveflseavlsGfiaGaaivillsqikvllgle..rvskkeslvsvlsslftnlek....vnlakvvlgllllvvLlvtkell 182
                     ++++lG++RLgfl ++ls+a+l+Gfi ++++v++++++ + l+l+    +++e  ++ + +++  ++      + ++++l+l  +++L+++k ++
      CCD23256.1 169 FLLFLGIFRLGFLGNILSRALLRGFICSVGFVMIINSLISELKLDkvLATSPEHYHTPFEKILFLIKYgqhnYHAPTAILSLYSFIILMLMKVMK 263
                     *********************************************754444444444444443322213334889******************** PP

  Sulfate_transp 183 kklkkl..lvipapaelvavivatlvsaifelkreagvkivgeip.sglpelslp..kvdwsllsallpdalaialvglleaiavsksldkkkgy 272
                     k+l+k+  +vi++p +l++++ ++++s+ f+ k++++++i+g+++ +g+++l+ p  k++  ll+ ll + +++a++g++e++++sk+l+++++ 
      CCD23256.1 264 KRLMKRfkWVIFVPEILIVIVGTIMFSFHFDIKHKFDISIIGDFKvNGFDSLHNPldKTNRLLLKPLLDAGIVCAVLGFFESTTASKALGTTYDL 358
                     *****99899999999****************************9456*******98888889999999************************** PP

  Sulfate_transp 273 kvdsnkELvAlGfsNilsslfgglpatgafsrsavnikaGaktqlsglvsalvvllvllvltplleyiPkavLaaiiivagkglLvelkel 363
                     +v+sn+ELvAlG +Ni++slfg+lpa+g++ rs +n+ +G++t +sg+ ++ v+l+++ ++ p+++++P +vL++++ v+g+ lL+e ++ 
      CCD23256.1 359 TVSSNRELVALGSMNIVGSLFGALPAFGGYGRSKINALSGGQTVMSGVCLGSVTLFTIKFFLPVVHNTPTCVLSVVTSVVGLTLLEEAPTD 449
                     *************************************************************************************997665 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   4.3e-22   1.3e-18      11     106 ..     545     649 ..     535     659 .. 0.92

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 4.3e-22
                 EEEEEEEEESHHHHHHHHHHHHHHHHCCC...............-SEEEEEEEEEEEE-HHHHHHHHHHHHHHHHTT-EEEEES-..-HHHHHHHHHTT CS
        STAS  11 lilrldgpidfanaesfkeklkravgeeperve.......kkeslkslildlsavsfiDssGvraLkeilkelkrigvevvlvni..kpevreklektg 100
                 l++++++p++f+n e++ke+l+r +++++ rv+       ++++ k++i+dl ++++iD s+++ L ei+  ++r++v v++v +  + evr+++e++g
  CCD23256.1 545 LVVKIPEPLTFTNTEDLKERLSRLERFGSVRVHpgrrdlrSRDKTKYIIFDLHGMTYIDASAAQILLEIILAYNRRQVFVFFVRVpmRREVRQRFERSG 643
                 89********************************************************************************99633799********* PP

                 CGGCC. CS
        STAS 101 ffdeve 106
                 + ++++
  CCD23256.1 644 LNKIIV 649
                 ***996 PP

>> MFS_MOT1  Molybdate transporter of MFS superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   4.8      0.03        90      24     109 ..      99     199 ..      81     201 .. 0.67
   2 !   19.8   6.6   2.6e-07   0.00077      12     111 .]     345     442 ..     334     442 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.03
    MFS_MOT1  24 laslsltalllsvGlmnlltglfggvPmc......hgAgglaaqyrf..........gartgaagillGlvllllgltgllerllrliPksvlgglllg 106
                 la++++ + l s+++  ++ ++fg vP        +++ ++   ++            + +++  ++ G++ll+lg+++ l  l +++ +++l+g ++ 
  CCD23256.1  99 LAHVEPLSGLYSLAITPFIYAIFGSVPQMivgpesAISLVVGQAVEPmvnhderistISISIVVTFISGSFLLFLGIFR-LGFLGNILSRALLRGFICS 196
                 456777888888888888888888888777778773333332222224445555444444445566789*******998.89999999*******9999 PP

    MFS_MOT1 107 aGl 109
                 +G+
  CCD23256.1 197 VGF 199
                 997 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 2.6e-07
    MFS_MOT1  12 lTllnlvialaalaslsltalllsvGlmnlltglfggvPmchgAgglaaqyrfgartgaagillGlvllllgltgllerllrliPksvlgglllgaGle 110
                  T+   +++++   ++s ++ l+ +G mn++++lfg++P   g g    +  +g +t+++g++lG+v l+   ++    +++ +P+ vl ++  ++Gl 
  CCD23256.1 345 STTASKALGTTYDLTVSSNRELVALGSMNIVGSLFGALPAFGGYGRSKINALSGGQTVMSGVCLGSVTLFTIKFF--LPVVHNTPTCVLSVVTSVVGLT 441
                 566666777777789999*******************9976555555555445999*********9999876665..8999****************98 PP

    MFS_MOT1 111 L 111
                 L
  CCD23256.1 442 L 442
                 7 PP

>> STAS_2  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.4e-05      0.13      28      79 ..     591     644 ..     547     645 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.4e-05
      STAS_2  28 evvvDlsgvervDsaalalLlalartarargrrlvlrg..lppalrrlldlyGl 79 
                  +  Dl+g +++D++a++ Ll+   +  +r+  + +++  +++++r+ ++++Gl
  CCD23256.1 591 YIIFDLHGMTYIDASAAQILLEIILAYNRRQVFVFFVRvpMRREVRQRFERSGL 644
                 5668*********************99888777777772244568888888887 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00011      0.32      79     144 ..     554     623 ..     546     631 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
   IstB_IS21  79 lfvrvedLveelkrarrdgkla.....ralkrllkvdllilDdlgllpldqaeaellfeviekryerrsii 144
                 +f+ +edL e+l+r +r g++      r l++  k++ +i D  g++ +d  +a+ l+e+i  +y+rr + 
  CCD23256.1 554 TFTNTEDLKERLSRLERFGSVRvhpgrRDLRSRDKTKYIIFDLHGMTYIDASAAQILLEIIL-AYNRRQVF 623
                 7999************99998533443889******************************96.57777665 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.7      0.87   2.6e+03       5      58 ..     157     207 ..     154     226 .. 0.66
   2 ?   11.1   0.1   0.00011      0.32       6      68 ..     245     302 ..     240     324 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.87
     UPF0242   5 lisiiflYll..PllllaiysiqllseqksWsllsiGlllaaaGsLlllllllkwe 58 
                 +isi++ ++    ll+l+i  +++l      ++ls +ll+  + s+  ++++  + 
  CCD23256.1 157 SISIVVTFISgsFLLFLGIFRLGFLG-----NILSRALLRGFICSVGFVMIINSLI 207
                 444444444310456999******99.....9******666666665555554444 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00011
     UPF0242   6 isiiflYllPll.llaiysiqllseqksWsllsiGlllaaaGsLlllllllkwekalkekleks 68 
                  +i+ lY+  +l l+ +++  l+  +  W +++  +l++++G++     ++ ++ ++k+k++ s
  CCD23256.1 245 TAILSLYSFIILmLMKVMKKRLMK-RFKWVIFVPEILIVIVGTI-----MFSFHFDIKHKFDIS 302
                 678889988888466777777776.899****************.....666666777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5213.80
//
Query:       CCD23257.1  [L=351]
Description: hypothetical protein NDAI_0B02220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-33  114.0   0.1    1.3e-32  113.2   0.1    1.4  1  ETF        Electron transfer flavoprotein domain
    5.3e-31  106.5   0.1    9.7e-31  105.7   0.1    1.5  1  ETF_alpha  Electron transfer flavoprotein FAD-binding domain


Domain annotation for each model (and alignments):
>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.2   0.1   1.4e-36   1.3e-32       1     164 [.      26     186 ..      26     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 113.2 bits;  conditional E-value: 1.4e-36
                 EEEEE-EC.CCCE-HHHHHHHHHHHHHHHHHT--EEEEEEES....S-..CHHHHHHCT-SEEEEEE-GGGSS--CCHHHHHHHHHHHHC.--SEEEEE CS
         ETF   1 vlvlaehgvdgklnpvdlealeaArrlkekaggevtavvvGppeaeea..lrealaamGadkvilvddpalagydaeatakalaalikke.dpdlvlag 96 
                 +l ++e+  dgk++  + +a+ aA +lk    +++ta+++G+ +   a  l+    + G+ ++++++d++l++y++e ++++l++++    ++++++++
  CCD23257.1  26 TLAFIEATRDGKVSIPSMSAIHAAQKLK----NPITAIIIGSHAPGIAkqLQSSSTDLGLQEILVAEDATLNTYLPEVVTPLLQNVLGTVdKYTHFVMA 120
                 578999999******************5....5*********65555577999999**********************************88******* PP

                 SSCCHHHHHHHHHHHCT-EEEEEESEEEEETCCEEEEEECCCCTEEEEEE-TSSSEEEEE-TTSS--.- CS
         ETF  97 ataigkqvaprlAalLgvplitdvteleveggkltvtRpieggnglaevveadlpavltvrpgafep.a 164
                 +++igk++ prlAa L+++ i dvte+ ++    t++Rpi++gn++a++ ++++  ++tvrp++f   +
  CCD23257.1 121 NSSIGKNIIPRLAAVLNYQAICDVTEILDA-T--TFKRPIYAGNAIATIGSQQKLNMITVRPSSFSItK 186
                 **************************9998.5..*******************************9852 PP

>> ETF_alpha  Electron transfer flavoprotein FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.1   1.1e-34   9.7e-31       2      84 .]     226     309 ..     225     309 .. 0.98

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 1.1e-34
                 -TTT-S-EEEE-GGGSSGGGHH.HHHHHHHHHT-EEEE-HHHHTTTSS-CCCB-SSSS-----S-EEEES----HHHHGGGTT- CS
   ETF_alpha   2 dLeeakvvvsgGrGlkskenle.lleelaealgaavgasRavvdagwipeerqvGqtGktvaPklyiavGisGaiqhlaGmkes 84 
                 dL++ak+v++gG  lk+ke++e ll+ la++l+aavga+Ra+vd g+++++ q+GqtGk+vaP+ly+a+G+sGaiqhlaGmk s
  CCD23257.1 226 DLTSAKTVITGGVSLKDKEHFEsLLDPLANTLNAAVGATRAAVDGGFCDNSLQIGQTGKIVAPDLYVAIGVSGAIQHLAGMKGS 309
                 89*******************8799********************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2568.17
//
Query:       CCD23258.1  [L=913]
Description: hypothetical protein NDAI_0B02230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1005  (0.0560544); expected 358.6 (0.02)
Passed bias filter:                      220  (0.0122706); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.40
# Mc/sec: 6810.42
//
Query:       CCD23259.1  [L=662]
Description: hypothetical protein NDAI_0B02240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-30  106.6   0.0    2.4e-30  105.5   0.0    1.6  1  PolyA_pol        Poly A polymerase head domain
    4.5e-06   26.3   0.0      1e-05   25.2   0.0    1.6  1  PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polym
     0.0096   15.9   3.8      0.054   13.5   3.8    2.3  1  tRNA_NucTran2_2  tRNA nucleotidyltransferase domain 2 putativ
  ------ inclusion threshold ------
      0.013   14.3   0.3      0.064   12.1   0.0    2.1  2  TRI5             Trichodiene synthase (TRI5)


Domain annotation for each model (and alignments):
>> PolyA_pol  Poly A polymerase head domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   5.4e-34   2.4e-30       1     126 []     154     297 ..     154     297 .. 0.97

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 5.4e-34
                 EEEETHHHHHHHTT---CEEEEEEC.S-HHHHHHHHHHHHT-EEEE.ETTTTCCCCEECCEE....EEECCEECEEEEEE---SSHHH........... CS
   PolyA_pol   1 lylvGGaVRDlllgkepkDvDlatd.aapeelakllrkkvkealls.geefqtiavlekkql....levatfRlekdesdarnpesekste........ 85 
                 l+++GG+VRD+llg++++D+D+a++ +++e +a  l++ ++++++  g++ + i+ + k++     le+at++l   e d++n + e++te        
  CCD23259.1 154 LRITGGWVRDKLLGQSSHDLDIAINiMSGESFAMGLNDFLNKHYQRyGIKPHSIHKIDKNPAkskhLETATTKLFGVEVDFVNLRAEEYTElsripimt 252
                 689**********************999*****************************999655678********************************* PP

                 ...HHHHHHCTSSBGGGS-EEECTTTCEE-TTS.HHHHHHTTEE- CS
   PolyA_pol  86 ...sleeDlkrRDftiNalaynlnkgkvlDlfg.GikdLkskvir 126
                    +  eD+ rRD t+Nal+yn++k+k++D+++ G+kdLk +++r
  CCD23259.1 253 kfgTPLEDALRRDATLNALFYNIQKNKIEDFTQmGLKDLKMGILR 297
                 ****************************************99986 PP

>> PolyA_pol_RNAbd  Probable RNA and SrmB- binding site of polymerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   2.3e-09     1e-05       1      57 [.     324     383 ..     324     386 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.3e-09
  PolyA_pol_RNAbd   1 gFtIepeTaaairklap...lLkkispeRifeEllKlLlsghpeaglelLretgLlkylf 57 
                      +F+I++++++ + ++       +kis eRi +E++K+L +++p  gl+l  + +L +++f
       CCD23259.1 324 NFKIDEKVQKEMNDHEInvaFNSKISRERIGVEMEKILNGPNPLLGLDLIQKNHLDNVIF 383
                      79**********99988333457**************************99999877766 PP

>> tRNA_NucTran2_2  tRNA nucleotidyltransferase domain 2 putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   3.8   1.2e-05     0.054      98     125 ..     603     629 ..     481     632 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
  tRNA_NucTran2_2  98 kskkeLaitGkdLlealgvkpGpwlgei 125
                      ++ k+L ++Gk+Ll  l++kpGpwlg+i
       CCD23259.1 603 HEIKPL-VDGKKLLTLLKMKPGPWLGKI 629
                      588999.*******************97 PP

>> TRI5  Trichodiene synthase (TRI5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.4e-05     0.064     128     156 ..     415     443 ..     400     452 .. 0.89
   2 ?   -0.8   0.1      0.12   5.5e+02     200     244 ..     539     583 ..     494     622 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.4e-05
        TRI5 128 llnehlpnllrhygsfcalnilrstldff 156
                 +ln+hl nl+r ++ f ++ +++st++ f
  CCD23259.1 415 ILNNHLKNLIRNFQEFVSIPLIKSTINEF 443
                 68***********************9643 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.12
        TRI5 200 derklfaeissavaqienqlvlvndllsfykeydderdqinlvsn 244
                  e  +f++i     q+   ++l+n+ l + ke ++ ++q+ + s 
  CCD23259.1 539 SEVGMFLKILNGHWQLIHFVSLLNEYLNLLKENNQYKNQLLINSL 583
                 566678888888888889999999999999998888877644443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1078  (0.0601261); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.39
# Mc/sec: 5060.62
//
Query:       CCD23260.1  [L=1156]
Description: hypothetical protein NDAI_0B02250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-41  140.2   1.8    3.6e-41  140.2   1.8    3.3  3  JmjC           JmjC domain, hydroxylase
    4.3e-15   55.4   3.0    1.4e-14   53.8   3.0    2.0  1  JmjN           jmjN domain
    6.9e-07   29.4  10.7    1.9e-06   28.0   7.2    2.6  2  zf-H2C2_2      Zinc-finger double domain
    7.7e-05   22.9  15.4      0.013   15.9   2.6    3.0  2  zf-C2H2        Zinc finger, C2H2 type
      0.005   16.9   2.5       0.01   15.9   2.5    1.5  1  Zn-ribbon_8    Zinc ribbon domain
  ------ inclusion threshold ------
      0.029   15.2  18.6       0.28   12.1   2.4    3.2  2  zf-C2H2_4      C2H2-type zinc finger
       0.11   12.6  12.1      0.026   14.5   4.1    2.6  2  zf-C2H2_6      C2H2-type zinc finger
       0.22   11.3   8.9      0.036   13.8   3.6    2.2  2  zf-C2H2_11     zinc-finger C2H2-type
        0.4   10.5   1.3        1.1    9.1   1.3    1.7  1  zinc_ribbon_5  zinc-ribbon domain
        4.3    7.0   7.9       0.49   10.1   2.7    2.3  2  zf_C2H2_ZHX    Zinc-fingers and homeoboxes C2H2 finger domain
        4.3    7.7  10.7        1.9    8.9   3.2    2.8  2  zf-C2H2_jaz    Zinc-finger double-stranded RNA-binding


Domain annotation for each model (and alignments):
>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   1.8   2.2e-44   3.6e-41       2     114 .]     261     376 ..     260     376 .. 0.99
   2 ?   -2.9   0.2       5.6   9.1e+03      15      53 ..     400     439 ..     395     471 .. 0.52
   3 ?   -0.6   0.5       1.1   1.7e+03      44      82 ..     553     590 ..     543     597 .. 0.69

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 2.2e-44
                 EEEE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHH...HHCCSTTGCCTTTCEE-HHHHHHTT---EEEEE-TT-EEEE-TT- CS
        JmjC   2 lylgmpksttpwhiedqglySinylhfgapkvWyiipeekkeklekvlskk...nskeqpdllrhkstlispkqlekegipvyrfvqkpgefVfvfpga 97 
                 ly+g +k+++pwh+edq+lySiny hfgapk+Wy+ip+e+ +k+ k+++++   +sk+++++lrhk+ + spk l ++gi+v+++v+ ++ef+++fp++
  CCD23260.1 261 LYAGLWKASFPWHLEDQDLYSINYIHFGAPKQWYSIPQEDNTKFYKFMKEQfpdESKSCSEFLRHKVFMASPKILTNNGIKVNKIVHYQHEFMITFPYG 359
                 8*****************************************************99******************************************* PP

                 EEEEEESSSEEEEEEEE CS
        JmjC  98 yHsvfnlgfniaeavnf 114
                 yHs+fn+g+n+ae+vnf
  CCD23260.1 360 YHSGFNYGYNLAESVNF 376
                 ****************9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.6
                 --GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHH..H CS
        JmjC  15 iedqglySinylhfgapkvWyiipeekkeklekvlskk..n 53 
                 i+  +l S n+  ++++ ++  i + + ++  +  s +  +
  CCD23260.1 400 IDVDKLAS-NWYSYKKSATPITINSTATNTNTDTHSSNtnQ 439
                 66667776.77777777777777666665555333333222 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.1
                 HHH.HHHHHHHHCCSTTGCCTTTCEE-HHHHHHTT---EE CS
        JmjC  44 kle.kvlskknskeqpdllrhkstlispkqlekegipvyr 82 
                 k+  kvl+++  ++q+ l++++ t   p+   ++ +p+++
  CCD23260.1 553 KFRkKVLRQQ--QQQQLLQKQQQTDTAPSSSSSSAFPPQS 590
                 4442455555..3455559999999999998888888776 PP

>> JmjN  jmjN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   3.0   8.5e-18   1.4e-14       1      34 []      19      52 ..      19      52 .. 1.00

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 8.5e-18
                -EE---HHHHC-HHHHHHHHHHHHCCCSEEEE-- CS
        JmjN  1 PvFyPTeeEFkdplkYiekieplgekyGIcKIvP 34
                PvF+P+ eEFkd++kY+++i+++g+++GI+KI+P
  CCD23260.1 19 PVFKPSFEEFKDFYKYVDSIKSYGMQSGIIKIIP 52
                9********************************9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.21   3.5e+02      13      26 .]     996    1009 ..     991    1009 .. 0.87
   2 !   28.0   7.2   1.2e-09   1.9e-06       1      26 []    1012    1038 ..    1012    1038 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.21
   zf-H2C2_2   13 kpyeCplCdkaFkt 26  
                  k+y C +C+  F++
  CCD23260.1  996 KIYVCLECKRQFTS 1009
                  78********9985 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 1.2e-09
   zf-H2C2_2    1 nLrrHirk.HtgekpyeCplCdkaFkt 26  
                  +L+rH ++ H gekp+ Cp+C+k+Fk+
  CCD23260.1 1012 HLTRHKKSvHSGEKPHSCPKCGKKFKR 1038
                  79*****55****************96 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   5.0   0.00018      0.29       1      23 []     998    1021 ..     998    1021 .. 0.97
   2 !   15.9   2.6   7.9e-06     0.013       1      21 [.    1027    1047 ..    1027    1048 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
                  EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2    1 ykCpdCgksFkrksnLkrHirt.H 23  
                  y+C +C++ F++ ++L+rH ++ H
  CCD23260.1  998 YVCLECKRQFTSGHHLTRHKKSvH 1021
                  99******************9988 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 7.9e-06
                  EEETTTTEEESSHHHHHHHHH CS
     zf-C2H2    1 ykCpdCgksFkrksnLkrHir 21  
                  + Cp+Cgk+Fkr+++  +H++
  CCD23260.1 1027 HSCPKCGKKFKRRDHVLQHLN 1047
                  68*****************97 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.5   6.2e-06      0.01       6      38 ..     998    1038 ..     997    1039 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.2e-06
  Zn-ribbon_8    6 YrCeeCghefe.......vlqsisdaplta.CPeCgsevrr 38  
                   Y C eC+++f+       +  s++  ++++ CP+Cg++ +r
   CCD23260.1  998 YVCLECKRQFTsghhltrHKKSVHSGEKPHsCPKCGKKFKR 1038
                   9***********9999653333336678899******9998 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   4.9   0.00045      0.73       1      24 []     998    1021 ..     998    1021 .. 0.97
   2 ?   12.1   2.4   0.00017      0.28       1      22 [.    1027    1048 ..    1027    1049 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00045
   zf-C2H2_4    1 fkCpiCgksFsskkaLlrHlkthH 24  
                  + C  C++ F+s ++L rH k++H
  CCD23260.1  998 YVCLECKRQFTSGHHLTRHKKSVH 1021
                  89*********************9 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00017
   zf-C2H2_4    1 fkCpiCgksFsskkaLlrHlkt 22  
                  + Cp Cgk F++++++l+Hl++
  CCD23260.1 1027 HSCPKCGKKFKRRDHVLQHLNK 1048
                  57*****************986 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   4.1   1.6e-05     0.026       2      26 ..     998    1022 ..     997    1023 .. 0.93
   2 ?    2.0   1.1      0.14   2.3e+02       2      12 ..    1027    1037 ..    1027    1039 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.6e-05
   zf-C2H2_6    2 heCsvCsksFpslqaLggHkksHrk 26  
                  ++C +C+++F s+  L+ Hkks ++
  CCD23260.1  998 YVCLECKRQFTSGHHLTRHKKSVHS 1022
                  99********************775 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.14
   zf-C2H2_6    2 heCsvCsksFp 12  
                  h C+ C+k F+
  CCD23260.1 1027 HSCPKCGKKFK 1037
                  78*******97 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   3.6   2.2e-05     0.036       7      28 ..    1000    1021 ..     998    1021 .. 0.94
   2 ?   -0.9   0.2      0.87   1.4e+03       6      14 ..    1028    1036 ..    1026    1037 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.2e-05
  zf-C2H2_11    7 CleCGlcftSqlsLsRHlfIvH 28  
                  CleC++ ftS   L RH   vH
  CCD23260.1 1000 CLECKRQFTSGHHLTRHKKSVH 1021
                  *****************88887 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.87
  zf-C2H2_11    6 qCleCGlcf 14  
                   C +CG +f
  CCD23260.1 1028 SCPKCGKKF 1036
                  599***999 PP

>> zinc_ribbon_5  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.3   0.00065       1.1       4      28 ..    1028    1052 ..    1027    1053 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00065
  zinc_ribbon_5    4 rCpdCdtkFklvdsklKksgkkVrC 28  
                     +Cp+C+ kFk  d  l  + kk+ C
     CCD23260.1 1028 SCPKCGKKFKRRDHVLQHLNKKIPC 1052
                     7*********************999 PP

>> zf_C2H2_ZHX  Zinc-fingers and homeoboxes C2H2 finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2       6.1   9.9e+03      24      37 ..     429     442 ..     428     444 .. 0.85
   2 ?   10.1   2.7    0.0003      0.49       4      32 ..     997    1025 ..     995    1046 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 6.1
  zf_C2H2_ZHX  24 NarsHpgetnftlq 37 
                  N  +H+++tn ++q
   CCD23260.1 429 NTDTHSSNTNQVYQ 442
                  8899****998876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0003
  zf_C2H2_ZHX    4 sFvCveCsfsakkfegLalHNarsHpget 32  
                    +vC+eC+   ++   L+ H   +H+ge+
   CCD23260.1  997 IYVCLECKRQFTSGHHLTRHKKSVHSGEK 1025
                   59*************************97 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.2    0.0012       1.9       2      23 ..     998    1019 ..     997    1028 .. 0.85
   2 ?    2.7   1.3       0.1   1.7e+02       2      24 ..    1027    1049 ..    1026    1050 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0012
                   CBBTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz    2 fYCvlCdKyFksenaldnHlkS 23  
                   + C +C+++F s + l  H+kS
   CCD23260.1  998 YVCLECKRQFTSGHHLTRHKKS 1019
                   67*******************9 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.1
                   CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz    2 fYCvlCdKyFksenaldnHlkSK 24  
                   + C+ C K Fk      +Hl+ K
   CCD23260.1 1027 HSCPKCGKKFKRRDHVLQHLNKK 1049
                   67999***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2329  (0.129901); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.01u 0.31s 00:00:01.32 Elapsed: 00:00:00.50
# Mc/sec: 6909.38
//
Query:       CCD23261.1  [L=241]
Description: hypothetical protein NDAI_0B02260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-42  145.6   0.0    1.5e-42  145.3   0.0    1.1  1  ADK           Adenylate kinase
    7.6e-18   65.2   0.0    1.6e-17   64.2   0.0    1.5  2  AAA_17        AAA domain
      1e-13   51.0   1.6    1.4e-13   50.6   0.1    1.9  2  ADK_lid       Adenylate kinase, active site lid
    2.8e-06   27.9   0.0    4.7e-06   27.2   0.0    1.3  1  AAA_18        AAA domain
     0.0023   18.1   0.0     0.0096   16.1   0.0    2.0  2  AAA_33        AAA domain
     0.0049   16.3   0.0     0.0072   15.7   0.0    1.2  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
  ------ inclusion threshold ------
      0.097   13.0   0.0        2.6    8.4   0.0    2.2  2  AAA_19        AAA domain
       0.13   12.7   0.0       0.23   11.9   0.0    1.4  1  RNA_helicase  RNA helicase


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.0   6.6e-46   1.5e-42       1     150 [.      16     208 ..      16     209 .. 0.95

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 6.6e-46
                 EEESTTSSHHHHHHHHHHHH.TSEEEEHHHHHHHHHHCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCH......GTTTEEEEESB-SSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkky.glahlstGdllRaevksgtelGkeakevmdkgelvpdevvvklvkeeleke......dkkkgfllDGfPRtveqaeal 92 
                 llG+Pg+GKGtq++kl++   ++ h+s+G+llR++++++t+lG+ a++++++g+l+pd++++kl++++l ++      + +++++lDGfPRt+ qae+l
  CCD23261.1  16 LLGPPGSGKGTQTKKLMNLIpQFDHISSGELLRQQINANTKLGQIASKYIHEGKLIPDDLITKLLTNRLFNPlspnsnNSNSKWILDGFPRTIIQAEHL 114
                 79***************9875899********************************************965432222367889**************** PP

                 HHHHHHHTSEESEEEEEE--HHHHHHHHHT....................................GSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  93 eelleeekvkldlvleldvpeevlveRltg....................................DneetvkkRletykkqtkplidyykkkg 150
                 ++ l ++++ ldlv+el+vp+++++ R+ +                                    D+  + k+R++ty++++ pl +yy+k+g
  CCD23261.1 115 DRTLLQNQTMLDLVVELNVPDSIILGRIEEryihpssgrvynlkynppkvpgrddvtgerlvkrvdDTLAAFKERIKTYHETADPLKEYYDKQG 208
                 *******************************************************************************************987 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   7.1e-21   1.6e-17       1     127 [.      17     153 ..      17     157 .. 0.83
   2 ?   -2.7   0.0       3.3   7.5e+03      84     108 ..     205     229 ..     176     231 .. 0.70

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 7.1e-21
                 EE-TTSSHHHHHHHHHHHH.TEEEEEHHHHHHHHHHTT.TS.HSSHHHHCTSHHHHHHHHHHHHHHHH......HHHHHSSEEEEEE-SEEEETTEEEE CS
      AAA_17   1 lGgPGsGKgtqceklveky.gfthlsaGdllreeakrg.gl.akardemrklpleekkelqkeaaeki......aeeakkkgvlvdghprikeqagfld 90 
                 lG+PGsGKgtq +kl+  + +f h+s G+llr+ ++ + +l + a +++++++l +++ ++k++ +++      + +++++++++dg+pr+  qa+ ld
  CCD23261.1  17 LGPPGSGKGTQTKKLMNLIpQFDHISSGELLRQQINANtKLgQIASKYIHEGKLIPDDLITKLLTNRLfnplspNSNNSNSKWILDGFPRTIIQAEHLD 115
                 7****************9989***********99988856745577889999***************977765555558899*************9988 PP

                 SSHHHHHHHH..SEEEEEE--HHHHHHHHHHH...TTST- CS
      AAA_17  91 glpkevleelkpdaiilleadpeeilerrlkd...rtrgr 127
                 +   +   +   d+++ l++++  il r  ++    ++gr
  CCD23261.1 116 RTLLQN--QTMLDLVVELNVPDSIILGRIEERyihPSSGR 153
                 888654..4445***********99999988754225655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.3
                 ETTEEEESSHHHHHHHH..SEEEEE CS
      AAA_17  84 eqagfldglpkevleelkpdaiill 108
                 +++g l++l  e+ + ++p+++ ll
  CCD23261.1 205 DKQGVLSTLSGETSDIIFPKLVSLL 229
                 3566677777777777777777666 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.1   6.1e-17   1.4e-13       1      36 []     145     180 ..     145     180 .. 0.98
   2 ?   -1.5   0.1       1.1   2.6e+03      10      21 ..     192     202 ..     191     206 .. 0.67

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 6.1e-17
                 EEE-TTT--EEETTTB--SSTTB-TTT--.-B--GG CS
     ADK_lid   1 RrvCpkCGrsYhvvfnpPkveglCDkCGepLvqRsD 36 
                 R ++p++Gr+Y++++npPkv+g +D++Ge Lv+R D
  CCD23261.1 145 RYIHPSSGRVYNLKYNPPKVPGRDDVTGERLVKRVD 180
                 99**********99********************98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
                 EEETTTB--SST CS
     ADK_lid  10 sYhvvfnpPkve 21 
                 +Yh +++ P +e
  CCD23261.1 192 TYH-ETADPLKE 202
                 8**.77556444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   2.1e-09   4.7e-06       2     113 ..      15     145 ..      14     155 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 2.1e-09
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf.........gvnlrdvakenglllevdpe....aldeskrldedkldklldaleenss...aleegknlvidghl 83 
                 +l G+pG+GK t +k L ++  +f                  +     +   +     ++e k + +d   kll++   n+    ++ +++ +++dg++
  CCD23261.1  15 VLLGPPGSGKGTQTKKLMNLIpQFdhissgellR--------QQINANTKLGQiaskYIHEGKLIPDDLITKLLTNRLFNPLspnSNNSNSKWILDGFP 105
                 589**************99988889555544442........433333333333334444455555555555555544444455556788999****** PP

      AAA_18  84 aeleseaakdikk..........vvLtaspeelleRlekR 113
                    ++++  d+            v L +++++ l R+e+R
  CCD23261.1 106 RTIIQAEHLDRTLlqnqtmldlvVELNVPDSIILGRIEER 145
                 999999999988899999*********************9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.3e-06    0.0096       3     119 ..      15     146 ..      14     153 .. 0.56
   2 ?   -2.8   0.0       2.9   6.5e+03     113     137 ..     173     190 ..     168     199 .. 0.57

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.3e-06
      AAA_33   3 llvGlpGsGKstlaerllkklg.avllssdtlrrrlfg...tdqqsktdytrvldrlyqilnelarkalsag.rnvildatnlsrrer........... 85 
                 +l G+pGsGK t  ++l++  + + ++ss +l+r+  +   +  q  ++y++  + + +   +l++k l+ + +n +  + n s++++           
  CCD23261.1  15 VLLGPPGSGKGTQTKKLMNLIPqFDHISSGELLRQQINantKLGQIASKYIHEGKLIPD---DLITKLLTNRlFNPLSPNSNNSNSKWildgfprtiiq 110
                 688***************88789999999998875555354333344455554444442...2244444333233444444444444444444433343 PP

      AAA_33  86 .arflk.larrlgvpvrivvvetdeetlkeRlakRa 119
                  + +++ l++++ + +++v ++++++ +  R+++R+
  CCD23261.1 111 aEHLDRtLLQNQTMLDLVVELNVPDSIILGRIEERY 146
                 333322134445555666666666666666666665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.9
      AAA_33 113 eRlakRaangddrsevpeealdrqk 137
                 eRl kR ++       +++a+++ +
  CCD23261.1 173 ERLVKRVDD-------TLAAFKERI 190
                 777777775.......334444333 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.2e-06    0.0072      24      56 ..      13      45 ..       4      66 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 3.2e-06
  Mg_chelatase 24 nlllvGppGsGKtmlakrlpsllpplseeeale 56
                   l+l+GppGsGK    k+l++l+p+ ++  + e
    CCD23261.1 13 RLVLLGPPGSGKGTQTKKLMNLIPQFDHISSGE 45
                  699*********************998766555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0011       2.6      13      39 ..      14      40 ..       3      63 .. 0.81
   2 ?    2.5   0.0     0.076   1.7e+02      53      77 ..     174     198 ..     170     234 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
      AAA_19 13 llvtaGpGtGKTrvlkhivallvelgg 39
                l+++++pG+GK + +k+ ++l+ +  +
  CCD23261.1 14 LVLLGPPGSGKGTQTKKLMNLIPQFDH 40
                7899*********99999988776655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.076
      AAA_19  53 rAakelrerlaalgaeatTiHrlal 77 
                 r +k++ + laa++++++T+H+ a 
  CCD23261.1 174 RLVKRVDDTLAAFKERIKTYHETAD 198
                 667999999*9999*******9854 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0001      0.23       2      59 ..      15      76 ..      14      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
  RNA_helicase  2 wlyGpsgeGKStlakeLakall..kkl..klkkkdsvysrnpeddfwdgYtgqevvvidDfg 59
                  +l Gp+g GK t +k+L++ +   +++  ++  ++++ ++++  ++ ++Y ++  ++ dD+ 
    CCD23261.1 15 VLLGPPGSGKGTQTKKLMNLIPqfDHIssGELLRQQINANTKLGQIASKYIHEGKLIPDDLI 76
                  799*************9998885545577677779999999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1754.94
//
Query:       CCD23262.1  [L=771]
Description: hypothetical protein NDAI_0B02270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.3e-55  186.4   3.7    3.3e-55  186.4   3.7    1.7  2  DEAD_2        DEAD_2
    1.4e-44  152.3   0.1    3.9e-44  150.8   0.0    1.8  2  Helicase_C_2  Helicase C-terminal domain
    5.7e-43  146.8   2.0    1.2e-38  132.7   0.4    2.7  2  HBB           Helical and beta-bridge domain
    0.00066   19.7   0.1      0.023   14.7   0.1    2.5  1  ResIII        Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.4   3.7   7.3e-59   3.3e-55       1     175 [.      71     256 ..      71     257 .. 0.96
   2 ?   -3.2   0.0       1.2   5.5e+03      77     107 ..     721     751 ..     710     753 .. 0.71

  Alignments for each domain:
  == domain 1  score: 186.4 bits;  conditional E-value: 7.3e-59
                 EEESSHHHHHHHHHHHHHHHHHCHH....HS---EEEE--CCCC-SCHHCCCHHCCCCHHHHHHHHHCCHHCCH........TTTTTT-SCCCCHHHHH CS
      DEAD_2   1 ycsRThsqleqvvkelkklesykkk....kekvkvviLgSRknlCineevkkekkekavneaCkelkkkkaeek........eekCsffenleelkklk 87 
                 ycsRT+s++e+++ el++l++y++k     e+++ ++L+SRknlC+++ v+ke+k++ v+e+C+++++  a++k         e C+++enl++++   
  CCD23262.1  71 YCSRTMSEIEKALVELENLMAYRAKelghVETFRGLGLTSRKNLCLHPVVSKERKGSVVDEKCRRMTNGIAKRKleqdpnadAELCEYHENLYKMEV-D 168
                 9***********************88887889**************************************99999******9999*******87775.8 PP

                 HHHHHC---CHHHHHHHHHCT--HHHHHHHHHCCTSEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHHHHHHHCC-EEEECHH CS
      DEAD_2  88 kllleevvdiedlvelgeklklCPYylsrelledadiiilpYqyLldekireslkgislknsivilDEAhNiedvceeaasveisees 175
                 + l+++v+++e+l +++e+ ++CPY+++r++++ ++i+i++Y+yLld+ki+e++++  +k+sivi+DEAhNi++vc+e++s++++++ 
  CCD23262.1 169 EYLPNGVFSFEKLIKYCEERTICPYFVVRRMISMCNIMIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHNIDNVCIESLSLDLTNDV 256
                 *******************************************************7679*************************9976 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.2
                 -SCCCCHHHHHHHHHHC---CHHHHHHHHHC CS
      DEAD_2  77 fenleelkklkkllleevvdiedlvelgekl 107
                  +++++ ++ k++   +v+++edl++  +++
  CCD23262.1 721 LRTMAQPTDPKDQEGVSVWSFEDLTKHQNEK 751
                 4455555555888889999999999966554 PP

>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.6   1.2e+04      20      54 ..     333     364 ..     327     372 .. 0.69
   2 !  150.8   0.0   8.7e-48   3.9e-44       1     169 [.     526     698 ..     526     700 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.6
  Helicase_C_2  20 klleevverlkeeleskkieifveekeesrekvle 54 
                   ++l++++e+lk+++  k ++++ e + +s+ + l+
    CCD23262.1 333 SFLKRLIEYLKTRM--KVLHVISE-TPKSFLQHLK 364
                   67888888888887..35566666.5555555554 PP

  == domain 2  score: 150.8 bits;  conditional E-value: 8.7e-48
  Helicase_C_2   1 llellevvpggvlvffpSyklleevverlkeel....eskkieifvee.keesrekvleeykek..kkkgaillavcrGklsEGidfsddllravii 90 
                   l+e+++++p+g++vffpSy ++e++v+ +++ +     +k++ i+ve+ ++++++  le+y+++  +++gaill+v+rGk+sEGidf  +++r v++
    CCD23262.1 526 LVEFAKITPDGMVVFFPSYLYMESIVSMWQTMGildeVWKHKLILVETpDAQETSLALETYRKAcsNGRGAILLSVARGKVSEGIDFDHQYGRTVLM 622
                   57899**************************87555556667888887688899999******556******************************* PP

  Helicase_C_2  91 vglPfpnpkdpeveakreyldekgkknsgkewylpealravnQaiGRliRhkdDygaivllDeRfakeeireklpkwlr 169
                   +g+Pf+ +++  ++a+ e+l+e+ +  + +++   +a+r   Q++GR++R kdDyg++vl D+Rf++++   +lpkw+ 
    CCD23262.1 623 IGIPFQYTESRILKARLEFLRENYQ-IRENDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFSRKR--TQLPKWIA 698
                   *************************.999**************************************99..77****97 PP

>> HBB  Helical and beta-bridge domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.4   2.8e-42   1.2e-38       2     190 .]     271     415 ..     270     415 .. 0.95
   2 !   12.9   0.1   1.5e-05     0.067     118     167 ..     432     482 ..     428     492 .. 0.82

  Alignments for each domain:
  == domain 1  score: 132.7 bits;  conditional E-value: 2.8e-42
                 CHCHCCCCHHCCCCCCCHHHHHHHHHCCCCH.HHHSTTTECCHCHHHHHCHCHHHCHHHHHHHHHHHHHHHHHHHCCHHCCCTCC-SHHHHHHHHHHHH CS
         HBB   2 ikeaketdepklqdeysrLvegLreaeeere.eeyvleeepilpdeileeavpglirsaehflsllkrlveygkarreekieksesPrsflsrlaefll 99 
                 i+++++ d+++lqdey++LvegL++     e ee ++e  p+l +++l+ea+pg+ir+aehf+s+lkrl+ey+k+r+++ +++se+P+sfl++l+    
  CCD23262.1 271 IDDVRKIDSQRLQDEYDKLVEGLHSSDIVPEqEEPFVET-PVLSKDLLKEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSFLQHLK---- 364
                 8999**********************9965516666665.*******************************************************.... PP

                 HHHTS.TTTEEEEEE.STT.EECCCCS-TCCHHHHHHHCHCCCCCCTS-SSHHHHHHHHT....EEE.S..S.GGHCCCCCCCCCSHTCCC CS
         HBB 100 awlssdeedYvrlvskeegesLeavcldPskalrflkerlssllmsgtltpleeysdiiGleaklkkfpspfpkEnlivlfatdVsTkyke 190
                                       +++++d +k+lrf++erls l+++++++++e+++++                 ++i++fat++sT++++
  CCD23262.1 365 ----------------------QLTFID-RKPLRFCSERLSLLVRTLEVNDVEDFNSL-----------------KDIATFATLISTYEDG 415
                 ......................******.*****************************.................*************986 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 1.5e-05
                 T.EECCCCS-TCCHHHHH.HHCHCCCCCCTS-SSHHHHHHHHT....EEE. CS
         HBB 118 gesLeavcldPskalrfl.kerlssllmsgtltpleeysdiiGleaklkkf 167
                 ++ +  +cld s a++++ ++  s++++sgt++pl+ y +++ +e++l+k 
  CCD23262.1 432 NPIMRFTCLDASIAIKPVfEKFSSVIITSGTISPLDMYPRMLNFETVLQKS 482
                 6788899***88888876266778899**************9999777664 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1     5e-06     0.023      16     144 ..      29     240 ..      15     262 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5e-06
                 T......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHG....................................... CS
      ResIII  16 leklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleef....................................... 74 
                 +++l+     + +++m+ GtGKT+ +++l+ +++ +++e  k++    + s +e++l e+                                       
  CCD23262.1  29 KKTLD--AGGNSILEMPSGTGKTVSLLSLTISYQMHYPEHrKIIYCSRTMSEIEKALVELenlmayrakelghvetfrglgltsrknlclhpvvskerk 125
                 44443..445789*************9999999999888856666666668888888666556777777778888888888888888888888887777 PP

                 ..........................................GGGTGG....GEEEESSS-B--.............-SEEEEEHHHHHHTH....... CS
      ResIII  75 ..........................................kkflseaykeigkkvsgdkkka......kekdstnkkilvttiqsldadseeeeees 125
                                                            ++l++ + + +k ++  +++        ++ ++ ++i++ +++ l  ++     e+
  CCD23262.1 126 gsvvdekcrrmtngiakrkleqdpnadaelceyhenlykmevDEYLPNGVFSFEKLIKYCEERTicpyfvVRRMISMCNIMIYSYHYLLDPK---IAER 221
                 77777777777777777666666666666655554444444444444444334444444444447778777778888888888888888877...4444 PP

                 .HHHTTT-SEEEEETGGGT CS
      ResIII 126 eellrdrfdviiiDEaHrl 144
                  +++ ++  ++i+DEaH++
  CCD23262.1 222 VSNEVSKDSIVIFDEAHNI 240
                 4455555568999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4967.58
//
Query:       CCD23263.1  [L=2190]
Description: hypothetical protein NDAI_0B02280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.8e-136  451.5   9.7    9.8e-78  260.9   0.1    2.4  2  Sec63         Sec63 Brl domain
    3.6e-35  121.3   0.0    2.9e-29  102.1   0.0    3.0  2  DEAD          DEAD/DEAH box helicase
    1.8e-16   60.6   4.4    5.4e-14   52.6   0.0    3.6  4  ResIII        Type III restriction enzyme, res subunit
    7.7e-12   45.4   1.2    7.7e-12   45.4   1.2    2.8  2  Helicase_PWI  N-terminal helicase PWI domain
    1.8e-09   37.9   3.6    2.1e-07   31.2   0.0    4.9  4  Helicase_C    Helicase conserved C-terminal domain
    0.00045   20.5   0.0     0.0028   17.9   0.0    2.4  1  AAA_22        AAA domain


Domain annotation for each model (and alignments):
>> Sec63  Sec63 Brl domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.9   0.1   3.3e-81   9.8e-78       1     254 [.    1027    1333 ..    1027    1336 .. 0.94
   2 !  192.2   5.7   2.9e-60   8.6e-57       1     256 [.    1872    2184 ..    1872    2185 .. 0.96

  Alignments for each domain:
  == domain 1  score: 260.9 bits;  conditional E-value: 3.3e-81
                  ECHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHTSSS--SSSTTSHHHHHHHHHHHHHTT---SSHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63    1 ptelGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlekvpikvkediespeaKvniLlqayisrlklegsdl 97  
                  +telGriaS++yi++++i+++n++l++++++ d+++i++ ++EF++i++R+eE++elk+L ekvpi+++e+i++p+aK+niLlq+yisrl+++g++l
  CCD23263.1 1027 STELGRIASYFYIKHTSIDVYNNELSEHSSQFDIFRIFALSDEFKYISIRQEERRELKELFEKVPIPIRETIDEPQAKTNILLQSYISRLRFDGFAL 1123
                  69*********************************************************************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT................................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
       Sec63   98 vsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds................................................. 145 
                   +D+ +i qna+r+lra++e++l++gw++ ++ ll+L+k+ve+rlw +                                                 
  CCD23263.1 1124 RADMIFIQQNAGRLLRAMYELCLRQGWSRSTKILLNLCKSVERRLWYTnsplrqfpncpqevikrtesstlpwndylnlespaavgrairserngkh 1220
                  **********************************************6669*********************************************** PP

                  .......S--EEEEEEECEBTTSEEEEEEEEEESSSS-SCTSSS-CH..TSBEEEEEEEEETTTTEEEEEEEEEESSTTTTTEEEEEEEEEEE-... CS
                  .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
       Sec63  146 .......lPkleieaevqpitrsklrvevtiereeeeskpdfpwdkk..gksekfwlvvedsendellaikrvtlekkklastqevkleftvpl..s 231 
                         +Pk++ ++++qp+t s lr++++i        pd++wdk+  g+se+f+++ved +++ +l++++v ++ + +++++ v++++++ +  +
  CCD23263.1 1221 vydlikrFPKVSAKCSIQPLTPSLLRIDLEII-------PDWVWDKNlhGNSEPFLVMVEDIDGNGILYYESVFITPDLISQEYVVDFSIQLTPaqQ 1310
                  ********************************.......************************************9876665444443333333114 PP

                  SSCCEEEEEEEEESSSSS-EEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  232 epgpkqltvrlisdswlgldqev 254 
                  +++p++++v++is++wl++  ++
  CCD23263.1 1311 KRLPPNFFVNVISEKWLHCHYQI 1333
                  559****************9886 PP

  == domain 2  score: 192.2 bits;  conditional E-value: 2.9e-60
                  ECHHHHHHHHHT--HHHHHHHHHHS-TT--HHHHHHHHHTSGGGGGS---TTHHHHHHHHHHTSSS--S..SSTTSHHHHHHHHHHHHHTT---SSH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63    1 ptelGriaShYyisyetiklfneslkpnttlkdlLeilssasEFeeipvReeEkkelkkLlekvpikvk..ediespeaKvniLlqayisrlklegs 95  
                  p++ + i+Sh  + + t+++f ++l++++tl+d+Le lssa+EFe+i++R+++ + l +L +k+p+ ++   +++ +++Kv+ Llqa++sr++le  
  CCD23263.1 1872 PLNGCLISSHNDVYFVTMDTFIKKLSKTSTLQDILETLSSATEFEQIRIRKNDYSNLVRLSKKLPLTFSldATMNITSFKVFTLLQAHFSRIPLE-P 1967
                  567789***********************************************************99977799**********************.* PP

                  HHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS-TT............................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................... RF
       Sec63   96 dlvsDlkyilqnairilralveillskgwlslalslleLskmveqrlwds............................................... 145 
                  ++  Dl yil++   +++ +++il+ +g l++ ++++++s+m++q++wd                                                
  CCD23263.1 1968 EFKEDLRYILTKSLQLVNSIIDILSGEGCLNA-TTAMDISQMIVQAIWDVdnplrqipffddnilakcaekkvetvydimsleddermeimmmenkk 2063
                  *******************************9.9**************999********************************************** PP

                  ..........S--EEEEEEE....CEBTTSEEEEEEEEEESSS.S-S....CTSSS-CHTSBEEEEEEEEETTTTEEEEEEEEEESSTTTTTEEEEE CS
                  ..........xxxxxxxxxx....xxxxxxxxxxxxxxxxxxx.xxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  146 ..........lPkleieaev....qpitrsklrvevtiereee.esk....pdfpwdkkgksekfwlvvedsendellaikrvtlekkklastqevk 223 
                            +P++++ ++     +++ ++ ++++v+++r++e es     +++p++k    e++wlv+++ +++el+aik+v+l+k+    +qe++
  CCD23263.1 2064 lvrvanfvnsYPNVALLYSPlnnsKIAIEQLISITVKLTRDDEpESLevitEQYPFKK---LENWWLVIGEVSKRELYAIKKVSLSKE----SQEYD 2153
                  ****************999899999999999********99997444788999*****...************************987....79999 PP

                  EEEEEE-.SSCCEEEEEEEEESSSSS-EEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       Sec63  224 leftvplsepgpkqltvrlisdswlgldqevti 256 
                  lef++  s++g+++lt+++++ds+l++d+ev++
  CCD23263.1 2154 LEFSL--SSSGNHELTIWCVCDSYLDADKEVSF 2184
                  ***99..5788*******************997 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.0   9.6e-33   2.9e-29       2     174 ..     531     707 ..     530     711 .. 0.86
   2 !   15.8   0.0     3e-06    0.0089      35     167 ..    1413    1542 ..    1395    1550 .. 0.80

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 9.6e-33
                 HHHHHHHHHHHTTC.EEEEEESTTSSHHHHHHHHHHHHHHHS.......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHH CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilggg.dvlvaaeTGsGKTlaflipvlqivyet.......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqls 92 
                 +iQ++++p++ +++ ++l++a+TG+GKT ++l+++l++++++        + ++ k+++++P+++L++++++++++++ y++++v+ ++g+  +r +++
  CCD23263.1 531 PIQSKVFPAAFKNDyNILLCAPTGAGKTNVALLAILRNLSHHyneqtgkLNLNHFKVVYIAPLKALVQEQVREFQRRLGYLGIKVSELTGD--TRLNRR 627
                 8**********7766************************999998888668899****************************999876664..457888 PP

                 HHHTTCSEEEEEHHHHHHHH....HCTSSH.CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxx....xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  93 kldngvdivvgtpgrlddll....stgkln.lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 ++ ++++i+v+tp+++d ++    +    + +++vr++++DE++ l d  +++ i++i++++    ++ ++  ++++lSATlp ++k
  CCD23263.1 628 EI-SETHILVSTPEKWDIITrkveD---TSfVEEVRLIIIDEVHLLHDA-RGPVIESIVARTLWS-QQLRERPRIVALSATLP-NYK 707
                 99.899***********98864322...3359****************9.**********99433.33334556********9.554 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3e-06
                  HHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHHH..HCTSSHCTTEEEEEEET CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
        DEAD   35 vlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrlddll..stgklnlsqvrflVlDE 129 
                  +l++     ++++ +al+++P++e +   l++++k +++i    +    +v+ + +l+ + ++ +++++tp+++  +   ++++ n++++++++ D 
  CCD23263.1 1413 ILNHW----RQNKGRALFICPSQEKIDYLLDKWQKKLSNIAGGKNINKLDVDLTLNLRII-ARNHLILTTPEQFNLVSrrWRQRKNIQKIELFICDG 1504
                  34333....67888************************9763333223367888888888.999*********9976688566669*********** PP

                  HHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  130 adrlldqgfsdfinrilnqlpqitcdgklqrqvivlSA 167 
                  +d++ +   +  +++ ++++  ++++ +++ ++i+ S 
  CCD23263.1 1505 IDQIGNGIPGALYESAISRILFMSTQLEKEVRIIATST 1542
                  ******98899999999999777777777767777764 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       1.8   5.4e+03      96     119 ..      81     106 ..      42     123 .. 0.60
   2 !   52.6   0.0   1.8e-17   5.4e-14      21     170 ..     538     704 ..     516     705 .. 0.79
   3 ?   -3.7   0.1       3.5     1e+04      56      96 ..     768     807 ..     758     819 .. 0.65
   4 !    7.9   0.0   0.00096       2.9      47     139 ..    1416    1503 ..    1406    1542 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
                 -.........-SEEEEEHHHHHHTH. CS
      ResIII  96 a..kekdstnkkilvttiqsldadse 119
                 +  k+ ++++ k +++t  +++++++
  CCD23263.1  81 EamKNVKRQQEKATIITQTKVNNNNN 106
                 12444455555556666666665552 PP

  == domain 2  score: 52.6 bits;  conditional E-value: 1.8e-17
                 .....TTSEEEEEESTTSTHHHHH.HHHHHHH-S..............-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SE CS
      ResIII  21 s...krdkrglikmaTGtGKTlva.aklierllkkgkee.........kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkki 106
                     k+d ++l+ ++TG+GKT va +++ ++l+++++e+         k++ ++p k+l++   +ef++ l      +  +++gd++ + ++++++++i
  CCD23263.1 538 PaafKNDYNILLCAPTGAGKTNVAlLAILRNLSHHYNEQtgklnlnhfKVVYIAPLKALVQEQVREFQRRLGYL-GIKVSELTGDTRLN-RREISETHI 634
                 14447999****************556666666666666******************************99854.44777888888888.9******** PP

                 EEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...TTTHHH.......HHT---SEEEEEESS-S CS
      ResIII 107 lvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..kswrei.......lekfkeavllglTATpe 170
                 lv+t ++ d +    ++ +++   ++  +iiiDE+H l+++    +++i        +  ++  +++l+AT++
  CCD23263.1 635 LVSTPEKWDIIT---RKVEDTSFVEEVRLIIIDEVHLLHDArgPVIESIvartlwsQQLRERPRIVALSATLP 704
                 ************...8899999999999************755233333333334223335699999999975 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.5
                 -EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B-- CS
      ResIII  56 kflflvprkslleqtleefkkflseaykeigkkvsgdkkka 96 
                 +++++v++++ + +t + +k+ + e ++ i+k++++d+ + 
  CCD23263.1 768 QVIVFVHSRKDTARTAKWLKNQFTESDN-INKIIKSDTSSV 807
                 6777777777777777766666665543.888888887665 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.00096
                  HH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.........-SEEEEEHHHHHHTH........HHHTTT-SEEEEE CS
      ResIII   47 rllkkgkee.kflflvprkslleqtleefkkflseaykeigkkvsgdkkka..kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiD 139 
                  + ++   ++ ++lf++p+++ ++ +l++++k ls+ +   gk++++   +   + + +  +++++tt ++++  s   +++++++  ++++++i+D
  CCD23263.1 1416 HWRQ---NKgRALFICPSQEKIDYLLDKWQKKLSNIA--GGKNINKLDVDLtlNLRIIARNHLILTTPEQFNLVS---RRWRQRKNIQKIELFICD 1503
                  3333...3349********877777777777666654..34444444433344478899****************...99***************9 PP

>> Helicase_PWI  N-terminal helicase PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   1.2   2.6e-15   7.7e-12       3     110 ..     317     424 ..     315     425 .. 0.92
   2 ?   -4.3   0.2         6   1.8e+04      29      52 ..    2035    2056 ..    2031    2066 .. 0.67

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 2.6e-15
  Helicase_PWI   3 delsvkeidafWLqrelkkiyk..DaeeaqelaeevleiLkseadelrelEnkLvelldydkfdliklllknrekivyctklaqaqseeekqeieee 97 
                   +++++ ++d+ +L+r+l ++++  D +   ++++++++ L +++ ++  l+ +L ++l+ d+ ++i+ +++nr  i++  +l+q+++ e+ +++ ee
    CCD23263.1 317 EDIQIYAVDESFLKRKLWQVLDtqDISLISNTQSQIIDELMNTEYDTTPLNINLTKILGEDHASFINYIIRNRLPIIWGYRLSQSSE-ENATKLFEE 412
                   6899***************9987688888888889888888877788***************************************9.9999***** PP

  Helicase_PWI  98 mkekpeleeilee 110
                   m+++ +le+++++
    CCD23263.1 413 MTAN-GLEDLVQQ 424
                   ****.****9998 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 6
  Helicase_PWI   29 aqelaeevleiLkseadelrelEn 52  
                    a+++ e+v++i++ e d+  ++E 
    CCD23263.1 2035 AEKKVETVYDIMSLE-DD-ERMEI 2056
                    677888999999988.44.34443 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       2.8   8.3e+03      52      76 ..      76     102 ..      68     121 .. 0.63
   2 ?   -2.2   0.0       1.7   5.2e+03      11      56 ..     579     628 ..     565     638 .. 0.72
   3 !   31.2   0.0   7.1e-11   2.1e-07       9     109 ..     759     906 ..     751     908 .. 0.66
   4 ?    0.9   0.0       0.2   5.8e+02       9      51 ..    1413    1462 ..    1405    1482 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.8
                 HHHHHHHHHHHH..TTSSSEEEESGGG CS
  Helicase_C  52 qnereeileqfn..kgesdvLiatdva 76 
                  +e+ee++++ +  +++ +++  t+v+
  CCD23263.1  76 DEEKEEAMKNVKrqQEKATIITQTKVN 102
                 566666666666433344455555554 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.7
                 HHTTTTSEEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHH CS
  Helicase_C  11 kleeeggkilifvntidrlek.vklllekk...gikvavlhgelpqnere 56 
                 kl+ ++ k++ +++ +  +++ v+ ++++    gikv  l+g++  n re
  CCD23263.1 579 KLNLNHFKVVYIAPLKALVQEqVREFQRRLgylGIKVSELTGDTRLNRRE 628
                 5666677777777778866556677744447789********99888887 PP

  == domain 3  score: 31.2 bits;  conditional E-value: 7.1e-11
                 HHHHTTTTSEEEEEESSHHHH...................HHHHHH............HHHT............TSTEEEESTTSTHHHHHHHHHHHHT CS
  Helicase_C   9 llkleeeggkilifvntidrl...................ekvkll............lekk............gikvavlhgelpqnereeileqfnk 64 
                  l++ +eg+++++fv+++++                         +            +  +               + ++h+ l+  +r  + + f +
  CCD23263.1 759 VLESVSEGHQVIVFVHSRKDTartakwlknqftesdninkI----IksdtssveilkrE--SetvqdlslksilTSGIGIHHAGLTRADRSLSEDLFAD 851
                 35788999999999999994422333333333333333330....13333333333330..13444444545666777788889*************** PP

                 TSSSEEEESGGGTSSSTSTTESEEEESSSS...........SSHHHHHHHHTTSSS CS
  Helicase_C  65 gesdvLiatdvaerGidipkvnlVinfdlp...........rnvtsyiqriGRtgR 109
                 g  +vL++t  ++ G+++p +++Vi+ +              +++++ q+ GR+gR
  CCD23263.1 852 GLLQVLVSTATLAWGVNLP-AHTVIIKGTEvyspekgiweqLSPQDILQMLGRAGR 906
                 ******************9.666665555555555666444447************ PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.2
                  HH.HHTTTTSEEEEEESSHHHHHHHHHHHHHT.........TSTEEEESTTST CS
  Helicase_C    9 ll.kleeeggkilifvntidrlekvklllekk.........gikvavlhgelp 51  
                  +l + ++++g++l +++++++++   +ll k          g ++ +l+ +l+
  CCD23263.1 1413 ILnHWRQNKGRALFICPSQEKID---YLLDKWqkklsniagGKNINKLDVDLT 1462
                  44667999************995...553333111223444566666665555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   9.4e-07    0.0028       4     110 ..     543     678 ..     540     694 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 9.4e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.............................erpevvfvtlpsstsskdllrellralglelka... 70 
                 +++ +++++++G+GKT ++     ++  + + e+                             +r +++ +                        +   
  CCD23263.1 543 NDYNILLCAPTGAGKTNVALLAILRNLSHHYNEQtgklnlnhfkvvyiaplkalvqeqvrefqRRLGYLGI------------------------Kvse 617
                 56789***********9999888888877777777788884444444444444444444444444444444........................2444 PP

      AAA_22  71 ....................erlsseellealeqalraravielliiDEaqhlr..seeale 110
                                      + + + + +++e+ +    v +l+iiDE++ l   +  ++e
  CCD23263.1 618 ltgdtrlnrreisethilvsTPEKWDIITRKVEDTSFVEEV-RLIIIDEVHLLHdaRGPVIE 678
                 55555555555555554442255555666888888887777.**********9544355555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       991  (0.0552736); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.14u 0.30s 00:00:01.44 Elapsed: 00:00:00.52
# Mc/sec: 12715.71
//
Query:       CCD23264.1  [L=748]
Description: hypothetical protein NDAI_0B02290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-35  121.7   0.3    3.2e-34  118.5   0.1    2.5  2  Rad17           Rad17 P-loop domain
    9.4e-05   22.9   0.0    0.00024   21.6   0.0    1.6  1  AAA_16          AAA ATPase domain
     0.0022   17.7   0.1      0.016   14.9   0.0    2.3  2  AAA_29          P-loop containing region of AAA domain
     0.0026   18.2   0.0     0.0083   16.6   0.0    1.9  1  AAA             ATPase family associated with various cellula
     0.0053   17.3   0.5      0.028   14.9   0.0    2.4  2  ABC_tran        ABC transporter
  ------ inclusion threshold ------
      0.025   14.8   0.0      0.073   13.3   0.0    1.8  1  AAA_22          AAA domain
      0.032   13.6   0.0      0.057   12.8   0.0    1.3  1  Mg_chelatase    Magnesium chelatase, subunit ChlI
      0.033   14.6   0.5       0.28   11.6   0.0    2.7  2  RNA_helicase    RNA helicase
      0.035   13.8   0.0      0.083   12.6   0.0    1.6  1  Cytidylate_kin  Cytidylate kinase
      0.064   12.8   0.0       0.24   10.9   0.0    1.9  2  AAA_7           P-loop containing dynein motor region
      0.084   12.8   0.0       0.19   11.6   0.0    1.6  1  NTPase_1        NTPase
      0.089   13.0   0.0       0.18   11.9   0.0    1.6  1  AAA_33          AAA domain
       0.12   12.6   1.7       0.34   11.1   0.5    2.5  2  GED             Dynamin GTPase effector domain
       0.21   12.2   0.0       0.21   12.2   0.0    3.5  4  AAA_18          AAA domain


Domain annotation for each model (and alignments):
>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.1   2.5e-37   3.2e-34       4     184 ..      85     277 ..      81     279 .. 0.82
   2 ?   -0.2   0.0      0.65   8.3e+02      96     119 ..     318     341 ..     300     354 .. 0.74

  Alignments for each domain:
  == domain 1  score: 118.5 bits;  conditional E-value: 2.5e-37
       Rad17   4 denelWfekykPekaeelavhkkkieevkewlkadvLesrkkr.......iLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdn...qksdf 92 
                 d+  +W+ ky P  ++e+ vhk+k+++vk+ ++++   +  +        iLL++GPsG +kst +k L+kel +k+r+  n+++   +     +    
  CCD23264.1  85 DDYIPWYKKYEPASLDEVVVHKQKLKDVKDVFESMLHSHISNDdadgyprILLLTGPSGSSKSTLIKQLAKELIPKYRN-TNGLNSSGTISlmgKTRKP 182
                 66779************************998887655443334557788***************************85.6777755444444455555 PP

       Rad17  93 kgltekesrf..........lsqiesfkeleLkdakylklqklGddlrtdkklilvedlPnkfyrds.dalrevirkylrsseal..plilviteiesl 178
                   ++e+++ +          +  +++f+e+ L++ ky    k G+    ++++il+edlPn+f+ ++   +++ ++++l+ss+    pl++++te+e+ 
  CCD23264.1 183 MEDVETNDIIeysndlllngMKTMDAFREF-LNQCKY----KCGN----NLSVILIEDLPNVFHAETrYIFQKSLLEWLYSSDIKlpPLVICLTECEI- 271
                 56666666556677889999**********.******....4554....789***************678***********997668*********96. PP

       Rad17 179 egdnnq 184
                 e dn++
  CCD23264.1 272 ERDNSY 277
                 778887 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.65
       Rad17  96 tekesrflsqiesfkeleLkdaky 119
                 t ++s+++ ++e+ kel++k+ k+
  CCD23264.1 318 TLMKSHLMKLCEVNKELLIKNDKW 341
                 445778899********9998776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.8e-07   0.00024      12      51 ..     120     160 ..     117     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.8e-07
      AAA_16  12 Llsale.rvrsgrpelvllsGesGvGKsslvrellralekd 51 
                 L+s ++ + ++g p+++ll+G+sG+ Ks+l+++l+++l  +
  CCD23264.1 120 LHSHISnDDADGYPRILLLTGPSGSSKSTLIKQLAKELIPK 160
                 55556656788999**********************99887 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.3e-05     0.016      24      53 ..     135     163 ..     120     171 .. 0.80
   2 ?   -1.0   0.0       1.1   1.5e+03       8      23 ..     444     459 ..     441     466 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
      AAA_29  24 atlltGpsGsGKSTllDAiqalLvpakkvr 53 
                 + lltGpsGs KSTl+  ++  L+p+  ++
  CCD23264.1 135 ILLLTGPSGSSKSTLIKQLAKELIPKY-RN 163
                 689*************88888888877.44 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
      AAA_29   8 NWgtfdghtieidlkg 23 
                 N gtf++++++i+l++
  CCD23264.1 444 NYGTFNKNKFDIKLAS 459
                 99*****999998765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.5e-06    0.0083       1      96 [.     136     255 ..     136     275 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 6.5e-06
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS............................STTHHHHHHHHHHHHHHHTS..TSEEEEEETGGG CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk............................yvgesekkirelfkeakeka..kpsilfiDEida 69 
                 +ll+Gp G  K++l+k++akel  ++ +++g +                                   ++++ +re+++++k k   + s+++i+++ +
  CCD23264.1 136 LLLTGPSGSSKSTLIKQLAKELIPKYRNTNGLNSSGTislmgktrkpmedvetndiieysndlllNGMKTMDAFREFLNQCKYKCgnNLSVILIEDLPN 234
                 69*******************944433333333332233333344455555555555556665545567888899999998777785669999999999 PP

                 HHHHHTTCCCHHHHHHHHHHHHHHHHT CS
         AAA  70 laksrsgseseeeervvnqLlteldgv 96 
                 ++ ++       +   ++ Ll+ l   
  CCD23264.1 235 VFHAE------TRYIFQKSLLEWLYSS 255
                 98888......4555555666655555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.2e-05     0.028      13      51 ..     135     182 ..     132     245 .. 0.83
   2 ?   -1.4   0.3       2.4   3.1e+03      52      80 ..     615     667 ..     588     736 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.2e-05
                 EEEEEESTTSSHHHHHHHHTTSS--.........SEEEEEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxx RF
    ABC_tran  13 kvaivGenGaGKStLlkllagllkp.........teGeilldgkdlke 51 
                 ++ ++G++G+ KStL+k la++l p          +G+i l gk  k 
  CCD23264.1 135 ILLLTGPSGSSKSTLIKQLAKELIPkyrntnglnSSGTISLMGKTRKP 182
                 67899*******************988887777777777776665554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.4
                 B-HHHCCHCEEEE-SS..--S-TTSBHHHH......................H CS
                 xxxxxxxxxxxxxxxx..xxxxxxxxxxxx......................x RF
    ABC_tran  52 qeleslrkeigvlpqe..pqlfpeltvren......................e 80 
                 ++++++rk++ +l  +   +l++ + ++e+                      +
  CCD23264.1 615 DTESQTRKSLDYLLRQrdYKLQKLIHMKEHnelkashdgvdtrdddtdrideK 667
                 55556666666665554455555555555555555555555444333333320 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.7e-05     0.073       4      29 ..     132     157 ..     129     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.7e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleql 29 
                 + +il++tG+sG+ K+tl+++l+++l
  CCD23264.1 132 YPRILLLTGPSGSSKSTLIKQLAKEL 157
                 5689*******************998 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.4e-05     0.057      25      69 ..     136     181 ..     129     191 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.4e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrl.psllpplseeealevakiasvagkkee 69 
                   lll+Gp+Gs K+ l+k+l ++l+p+  +++ l+++   s++gk+++
    CCD23264.1 136 LLLTGPSGSSKSTLIKQLaKELIPKYRNTNGLNSSGTISLMGKTRK 181
                   899**********9999835799*****************996544 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00022      0.28       2      27 ..     137     166 ..     136     196 .. 0.77
   2 ?   -0.6   0.1       1.3   1.7e+03      47      93 ..     532     573 ..     521     581 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00022
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl....k 27 
                   +l+Gpsg  KStl+k+Lak+l  k+    +
    CCD23264.1 137 LLTGPSGSSKSTLIKQLAKELIPKYrntnG 166
                   799******************976633333 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.3
  RNA_helicase  47 YtgqevvvidDfgqvkdeenpsdlaelirlvsstpyplnmasleekg 93 
                   Y+ +ev+ + D+  +     +  +  +ir + +++ ++ m  l++ g
    CCD23264.1 532 YKYNEVHQMNDIIYQ-----YGYYGPFIRRIRNYKKKVLMHCLKNNG 573
                   555566666665544.....457888889999999999998888876 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.5e-05     0.083       3      32 ..     138     167 ..     136     210 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.5e-05
                     EE-STTSSHHHHHHHHHHHHT-EEEEHHHH CS
  Cytidylate_kin   3 iDGPagsGKssvaralaeklglkyldtgal 32 
                     + GP+gs Ks++ ++la++l  ky +t  l
      CCD23264.1 138 LTGPSGSSKSTLIKQLAKELIPKYRNTNGL 167
                     56*******************999999755 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00019      0.24      36      70 ..     136     170 ..     126     181 .. 0.85
   2 ?   -2.8   0.0         3   3.9e+03      26      58 ..     554     586 ..     549     592 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
       AAA_7  36 vllvGptGtGKtviikdllkkldkekylsltinfs 70 
                 +ll+Gp+G++K+++ik+l k+l ++  +++ +n s
  CCD23264.1 136 LLLTGPSGSSKSTLIKQLAKELIPKYRNTNGLNSS 170
                 79******************999777666666655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3
       AAA_7  26 lelllknkkpvllvGptGtGKtviikdllkkld 58 
                 ++ + + kk+vl+   +  G + +ik+++++l+
  CCD23264.1 554 IRRIRNYKKKVLMHCLKNNGSSEMIKNMMDTLS 586
                 566677888999999999999999999998887 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.19       2      32 ..     136     166 ..     135     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgG 32 
                 +++TGp+G+ K+Tl+k+++++l  +  + +G
  CCD23264.1 136 LLLTGPSGSSKSTLIKQLAKELIPKYRNTNG 166
                 579****************999766666666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.18       2      23 ..     136     157 ..     135     246 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
      AAA_33   2 vllvGlpGsGKstlaerllkkl 23 
                 +ll G++Gs Kstl+++l+k+l
  CCD23264.1 136 LLLTGPSGSSKSTLIKQLAKEL 157
                 6899***************997 PP

>> GED  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   0.00027      0.34      15      59 ..     548     592 ..     532     596 .. 0.83
   2 ?   -2.2   0.0       3.7   4.8e+03      60      77 ..     609     626 ..     603     630 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHHHHHHHHHHHHTHHHHCCCCCHHHCCTTSGGGHH CS
         GED  15 sYfnivrktiadqiPkaimhllvneakeslqkellakLykkedld 59 
                  Y+  + ++i++   k+ mh+l n+ ++++ k++++ L  ++++d
  CCD23264.1 548 GYYGPFIRRIRNYKKKVLMHCLKNNGSSEMIKNMMDTLSVDDNID 592
                 4789999*******************************9999887 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.7
                 HHT---SCHCCCCHHHHH CS
         GED  60 eLLkEdeeiaekRkelkk 77 
                  L++Ed+  ++ Rk+l  
  CCD23264.1 609 YLISEDDTESQTRKSLDY 626
                 5899*********99876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       4.9   6.2e+03      44      90 ..      84     127 ..      59     132 .. 0.59
   2 ?   12.2   0.0   0.00016      0.21       2      86 ..     137     236 ..     136     267 .. 0.69
   3 ?   -1.2   0.1       2.2   2.8e+03      34      71 ..     540     575 ..     512     636 .. 0.59
   4 ?   -1.0   1.6       1.9   2.4e+03      29      54 ..     645     666 ..     590     709 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.9
      AAA_18  44 e.....aldeskrldedkldklldaleenssaleegknlvidghlaelesea 90 
                 +     ++++++ +  d + ++ ++l+   +        v+++ l  ++s +
  CCD23264.1  84 AddyipWYKKYEPASLDEVVVHKQKLKDVKD--------VFESMLHSHISND 127
                 1233556666666666666666666666543........6666666666655 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00016
      AAA_18   2 lltGtpGvGKttlakeLskrlgf...........gvnlrdvakenglllevdpe...aldeskrldedkldklldaleenss..aleegknlvidghla 84 
                 lltG++G+ K+tl k L+k+l +           +  ++ + k + + ++v+ +   ++++ + l+ +k++ +++++ ++++     + ++++i+++++
  CCD23264.1 137 LLTGPSGSSKSTLIKQLAKEL-IpkyrntnglnsSGTISLMGKTRKPMEDVETNdiiEYSNDLLLNGMKTMDAFREFLNQCKykCGNNLSVILIEDLPN 234
                 79*****************97.34458888667755555666666666666555677777777777777777777777777654333334446666666 PP

      AAA_18  85 el 86 
                  +
  CCD23264.1 235 VF 236
                 54 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.2
      AAA_18  34 englllevdpealdeskrldedkldklldaleenssal 71 
                  n++ + +  +  +  +r++  k ++l+ +l++n s +
  CCD23264.1 540 MNDIIYQYGYY-GPFIRRIRNYKKKVLMHCLKNNGS-S 575
                 44444444444.445555666666666666666654.2 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.9
      AAA_18  29 rdvakenglllevdpealdeskrlde 54 
                 +++ + ++ ++++d++    ++r+de
  CCD23264.1 645 NELKASHDGVDTRDDD----TDRIDE 666
                 3333333333333333....222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1277  (0.0712254); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 4696.52
//
Query:       CCD23265.1  [L=299]
Description: hypothetical protein NDAI_0B02300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-15   56.9   0.0    2.1e-14   53.5   0.0    2.2  2  Glutaredoxin   Glutaredoxin
    5.2e-13   48.9   0.0    1.3e-12   47.6   0.0    1.7  1  Thioredoxin    Thioredoxin
    6.4e-06   26.1   0.0    3.2e-05   23.9   0.0    2.0  2  AhpC-TSA       AhpC/TSA family
  ------ inclusion threshold ------
      0.027   13.8   0.2      0.056   12.8   0.1    1.3  1  OST3_OST6      OST3 / OST6 family, transporter family
       0.08   13.3   9.4       0.23   11.8   0.0    3.6  4  Thioredoxin_8  Thioredoxin-like
      0.097   13.1   0.1        3.8    8.0   0.0    3.0  3  Thioredoxin_2  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.18   5.4e+02       1      27 [.      28      54 ..      28      91 .. 0.61
   2 !   53.5   0.0   6.9e-18   2.1e-14       1      59 [.     196     259 ..     196     260 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.18
                  EEEEESTSSHHHHHHHHHHHHTTGGEE CS
  Glutaredoxin  1 vvlftkptCpyCkkakrlLkelgvkfe 27
                  v++f +++ + C+ + +l++ l+ +f+
    CCD23265.1 28 VLYFYTKWAEPCHSTNELFDALNDEFR 54
                  567777777899999999999885543 PP

  == domain 2  score: 53.5 bits;  conditional E-value: 6.9e-18
                   EEEEES.....TSSHHHHHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEE CS
  Glutaredoxin   1 vvlftk.....ptCpyCkkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvfidgkh 59 
                   v+lf k     p C+y+++++++L+ ++++f +++v+ d ++r  +k++s+++t+Pq++i+g++
    CCD23265.1 196 VMLFLKgtpsePKCGYSRQMVKILRANKIRFGFFNVLSDNNVRINMKKFSDWPTFPQLYINGEF 259
                   78888999999***************************************************97 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   4.4e-16   1.3e-12       5     101 ..       7     107 ..       3     109 .. 0.88

  Alignments for each domain:
  == domain 1  score: 47.6 bits;  conditional E-value: 4.4e-16
                  SSHHHHHHHHTT....TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT.TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHH CS
  Thioredoxin   5 ltkenFeeevak....ekklvlveFyApwCghCkalaPeleklaeelkd.kvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekekl 97 
                  +t+e+F +  ++    ++kl+++ Fy +w  +C + +  +++l +e+++ +  ++ +d+d n+d+ ++++v+ +P +++++ngk  ++++g+ + +k+
   CCD23265.1   7 TTNEQFTQLTEAssppDNKLIVLYFYTKWAEPCHSTNELFDALNDEFRNeNALFLAIDADINNDIISNLNVSIVPYFIFIQNGKLLEQLSGEDP-KKF 103
                  66777777666655667899****************************99******************************************99.666 PP

                  HHHH CS
  Thioredoxin  98 aafl 101
                  ++ l
   CCD23265.1 104 VQIL 107
                  6655 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.1e-08   3.2e-05      12      71 ..       9      69 ..       1      98 [. 0.81
   2 ?   -0.6   0.0      0.39   1.2e+03      12      41 ..     179     209 ..     171     240 .. 0.76

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.1e-08
                STTCEEEECHHH..TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH CS
    AhpC-TSA 12 nadgetvslsdy..kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspe 71
                n+++++ + +     +k +vl+fy+k w ++C    + + +l++ef+++++  +++ +d   
  CCD23265.1  9 NEQFTQLTEASSppDNKLIVLYFYTK-WAEPCHSTNELFDALNDEFRNENALFLAIDADINN 69
                55566655544456679*********.*****************************998655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.39
                 STTCEEEECHHH.TTSEEEEEEESTST-CCH CS
    AhpC-TSA  12 nadgetvslsdy.kgkpvvlffypkdwcpvC 41 
                 n+d  + +ls++ +  pv+lf   + ++p C
  CCD23265.1 179 NEDEFNLKLSKLvQAAPVMLFLKGTPSEPKC 209
                 5566677888887778999998777666666 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.9e-05     0.056      18     105 ..       9      89 ..       5     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.9e-05
   OST3_OST6  18 denykell.k.gprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppk 105
                 +e++++l+ + +p d +++vl   t+     e+C+  ++ f+++ + +r++      + +F  +d d + d+ + l+++ +P +++++  
  CCD23265.1   9 NEQFTQLTeAsSPPDNKLIVLYFYTK---WAEPCHSTNELFDALNDEFRNE------NALFLAIDADINNDIISNLNVSIVPYFIFIQNG 89 
                 67777777424666666666666663...46799999999*********99......689*************************99873 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.6e-05      0.23       1      35 [.      24      57 ..      24      66 .. 0.81
   2 ?    7.3   0.1     0.002       5.9      51      91 ..      50      88 ..      46      90 .. 0.87
   3 ?    0.8   0.7       0.2   6.1e+02      41      68 ..     149     176 ..     130     203 .. 0.66
   4 ?   -2.2   0.0       1.8   5.2e+03      49      87 ..     214     254 ..     210     256 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.6e-05
                   .SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTS CS
  Thioredoxin_8  1 gkvvlLyfgaswcppckaftpklkelyeklkkkkk 35
                   +k+++Lyf+++w +pc   ++  ++l ++++ + +
     CCD23265.1 24 NKLIVLYFYTKWAEPCHSTNELFDALNDEFR-NEN 57
                   799*********************9999998.333 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.002
                   HHHGGGS-TTSEE.EE-TT-HHHHTT-S--TT-SEEEEE-T CS
  Thioredoxin_8 51 ekylkknkkpwlsvpfddkkrnklkkkynvkaiPtlvvldk 91
                   ++ +++   + l+++ d + +n +++++nv+ +P ++ +++
     CCD23265.1 50 NDEFRNE--NALFLAIDADINNDIISNLNVSIVPYFIFIQN 88
                   6677777..99************************999875 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.2
                    EE-SS-HHHHHHHGGGS-TTSEE.EE-T CS
  Thioredoxin_8  41 vsldkkeeefekylkknkkpwlsvpfdd 68 
                    + +d + e+ +k++k+ ++  ++v+++ 
     CCD23265.1 149 IDSDYTSEDDIKHTKHFHNHMHHVDTQH 176
                    5667777777777777777777776654 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.8
                    HHHHHGGGS..-TTSEE.EE-TT-HHHHTT-S--TT-SEEE CS
  Thioredoxin_8  49 efekylkkn..kkpwlsvpfddkkrnklkkkynvkaiPtlv 87 
                    ++ k l+ n  ++ + +v  d+  r  +kk  +   +P l+
     CCD23265.1 214 QMVKILRANkiRFGFFNVLSDNNVRINMKKFSDWPTFPQLY 254
                    56666666633334444444444466666666666666665 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0013       3.8       5     108 ..      24     106 ..      21     107 .. 0.64
   2 ?   -0.6   0.0      0.61   1.8e+03      67      90 ..     182     203 ..     134     219 .. 0.62
   3 ?    0.0   0.0      0.38   1.1e+03      14      36 ..     206     225 ..     192     246 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0013
  Thioredoxin_2   5 gkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtivfldgkeivarlpGyv 100
                    +k ++++f++ +   C+  ++ ++ l   ++      ++ + ++ + ai+ + +           ++    ++v+ +P+++f++  + +++l G  
     CCD23265.1  24 NKLIVLYFYTKWAEPCHSTNELFDAL---NDE-----FR-NENALFLAIDADIN-----------NDIISNLNVSIVPYFIFIQNGKLLEQLSGE- 98 
                    67777888888888888866544444...333.....32.23455555555554...........468999999999997766655588899888. PP

  Thioredoxin_2 101 paeeleal 108
                    +++++ ++
     CCD23265.1  99 DPKKFVQI 106
                    56666665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.61
  Thioredoxin_2  67 eenvelarkygvrgtPtivfldgk 90 
                    e n +l++   v++ P ++fl g+
     CCD23265.1 182 EFNLKLSKL--VQAAPVMLFLKGT 203
                    333444443..6677777776666 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.38
  Thioredoxin_2  14 dpdCpyCkklkkelkelddvtvr 36 
                     p+C+y +++ k l+ +   ++r
     CCD23265.1 206 EPKCGYSRQMVKILRAN---KIR 225
                    45666666666555544...444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2110.67
//
Query:       CCD23266.1  [L=326]
Description: hypothetical protein NDAI_0B02310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-11   44.1   0.3    1.3e-10   41.8   0.0    2.0  2  Methyltransf_25  Methyltransferase domain
      3e-09   37.4   0.0    5.4e-09   36.6   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.1e-07   32.5   0.0    1.1e-07   32.5   0.0    2.1  2  Methyltransf_12  Methyltransferase domain
    2.2e-07   30.8   0.0    3.7e-07   30.1   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    6.3e-05   22.9   0.1    0.00011   22.1   0.1    1.4  1  Methyltransf_23  Methyltransferase domain
    0.00025   21.4   4.3    0.00058   20.2   4.3    1.6  1  CENP-B_dimeris   Centromere protein B dimerisation domain
    0.00036   20.0   0.1    0.00056   19.3   0.1    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0086   15.6   0.0      0.015   14.9   0.0    1.3  1  MTS              Methyltransferase small domain
  ------ inclusion threshold ------
      0.017   14.8   0.0      0.026   14.3   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
      0.057   11.9   1.2      0.074   11.5   1.2    1.1  1  SGT1             SGT1 protein
      0.059   13.7   0.1       0.12   12.7   0.1    1.5  1  DUF3605          Protein of unknown function (DUF3605)
      0.072   12.6   0.0       0.14   11.6   0.0    1.4  1  Methyltransf_4   Putative methyltransferase
       0.66   10.2   5.4        1.3    9.3   5.4    1.4  1  DUF4611          Domain of unknown function (DUF4611)
        1.2    8.4   9.5        2.4    7.4   9.5    1.4  1  NOA36            NOA36 protein


Domain annotation for each model (and alignments):
>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0     1e-13   1.3e-10       2      80 ..      66     153 ..      65     164 .. 0.84
   2 ?   -0.2   0.1       1.3   1.6e+03      40      81 ..     244     289 ..     223     301 .. 0.53

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1e-13
                      EEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHH..TTT.....TEEEEESBCCGBSSSTT.TEEEEEEESTGGGSSHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraee..egl.....nvefvqgdaedlpfedg.sfDlvvssgalhhlsde 80 
                      Ld+GcGtG  t+++ k+l+  ++++g D+s++m+++a++ ++   +++     ++ f++ ++ d++f +g ++D+++++ + h+++ +
       CCD23266.1  66 LDVGCGTGIATFQMFKQLPeYKRIIGSDLSSSMIKQANNLLKTniNDIkendrELAFHVSSCYDFEFLQGvKCDMITAVECAHWFNFN 153
                      9*****************559*****************877665522244556*************97776*******9999998755 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.3
                      HHHHTTTTEEE.....EESBCCGBSSSTTTEEEEEEEST.GGGSSHHH CS
  Methyltransf_25  40 raeeeglnvef.....vqgdaedlpfedgsfDlvvssga.lhhlsded 81 
                      ++e++++  +f      ++++e+++   ++f + +s+ +     +++d
       CCD23266.1 244 NIEDDNC--NFplticKEMSIEEFSRYTKTFSAYHSWKHdAKNAKKKD 289
                      3333443..222232355777888888888888888766555543333 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   4.2e-12   5.4e-09       1      75 [.      66     151 ..      66     166 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 4.2e-12
                      EEET-TTSHHHHHHHHTT...SEEEEEES-HHHHHHHHHHCCHHT-.......EEEETTEECCCTSS-TT.-EEEEEEES-CCC-C CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg...arvvgvDlskemlklakekaseegl.......kvefvvadaeklpfedn.sfDlvvssevlhhve 75 
                      LdvGcGtG+ + ++ k+    +r++g Dls  m+k+a++  +++ +       ++ f+v+++ ++ f  + ++D++++ e+ h+++
       CCD23266.1  66 LDVGCGTGIATFQMFKQLpeyKRIIGSDLSSSMIKQANNLLKTNINdikendrELAFHVSSCYDFEFLQGvKCDMITAVECAHWFN 151
                      8**************888888****************9999999889999999999*********877755*************94 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.6       7.1   9.1e+03      44      62 ..      32      50 ..      24      56 .. 0.55
   2 !   32.5   0.0   8.5e-11   1.1e-07       1      79 [.      66     150 ..      66     165 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7.1
  Methyltransf_12 44 ennnnnnvelealdlldld 62
                       ++ ++++++++d++d+d
       CCD23266.1 32 YFHSDTVNDNDDDDDDDDD 50
                     4445555555555555444 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 8.5e-11
  Methyltransf_12   1 LeiGcGtGsllrallekl.pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.....ssfDlvvasnvlhhl 79 
                      L++GcGtG  ++ + ++l + ++++g+D+s+s+i++a + l+ ++n+  +n +  a ++++  +       + D+++a ++ h++
       CCD23266.1  66 LDVGCGTGIATFQMFKQLpEYKRIIGSDLSSSMIKQANNLLKTNINDIKENDRELAFHVSSCYDFeflqgVKCDMITAVECAHWF 150
                      8*****************8899999*********999999999998777777777666666555588999999999999999997 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.9e-10   3.7e-07       7      50 ..      65     108 ..      61     166 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 2.9e-10
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqk 50 
                       lD+GCGtG  tf+++++l + ++++G D s  +i++A++ ++ 
       CCD23266.1  65 XLDVGCGTGIATFQMFKQLPEYKRIIGSDLSSSMIKQANNLLKT 108
                      69**************99999999***************96654 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   8.7e-08   0.00011      25      95 ..      64     150 ..      18     155 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 8.7e-08
  Methyltransf_23  25 rvLdiGcGtG.illevlrengf..svtgvDlspeaveiae............kakkaqkdqfdeqeaaepqg..................kfdl 85 
                        Ld+GcGtG  + + +++ +    ++g Dls+ +++ a             +                 ++                  k+d 
       CCD23266.1  64 XXLDVGCGTGiATFQMFKQLPEykRIIGSDLSSSMIKQANnllktnindikeN-----------------DRelafhvsscydfeflqgvKCDM 140
                      67********668888877543359************8865555444444442.................444444444445555555589*** PP

  Methyltransf_23  86 Ivlrevlehv 95 
                      I++ e+ +++
       CCD23266.1 141 ITAVECAHWF 150
                      9999998876 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   4.3   4.5e-07   0.00058      16      57 ..      35      81 ..      26     106 .. 0.55

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.5e-07
  CENP-B_dimeris 16 sdeeeeeeeedeededeeddeddd....evpv.psfgeamayfamvk 57
                    sd  ++++++d++d+d++dd+dd        +    g  +a f m k
      CCD23266.1 35 SDTVNDNDDDDDDDDDDDDDDDDXxxxxXXXLdVGCGTGIATFQMFK 81
                    33333333333333333333333200002222123466666666666 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   4.4e-07   0.00056      50     112 ..      64     122 ..      54     144 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.4e-07
                      EEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TT CS
  Ubie_methyltran  50 kvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpf 112
                        lDv +Gtg  +f++ +++ e  ++++ D++++m+k++++ lk +    i+ ++ n  eL f
       CCD23266.1  64 XXLDVGCGTGIATFQMFKQLPEYKRIIGSDLSSSMIKQANNLLKTN----INDIKENDRELAF 122
                      679**********************************999877653....3333344444433 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.2e-05     0.015      34      83 ..      64     114 ..      57     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
                 EEEEET-TTSHHHHHHHHHTTC.E.EEEEESBHHHHHHHHHHHHHTTGCEE CS
         MTS  34 kvlDlGcGaGvlgaalakespeae.vtlvdvdarAlesakenleankleve 83 
                   lD+GcG+G+ + ++ k+ pe + +   d +   ++ a++ l++n  +++
  CCD23266.1  64 XXLDVGCGTGIATFQMFKQLPEYKrIIGSDLSSSMIKQANNLLKTNINDIK 114
                 579*******************999************99999988876655 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     2e-05     0.026      77     123 ..      65     111 ..      60     132 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2e-05
                 EEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTT CS
        PCMT  77 vLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldl 123
                  L+vG+G+G+ t  + + + e  r+++ + + +++++a++ lk++  
  CCD23266.1  65 XLDVGCGTGIATFQMFKQLPEYKRIIGSDLSSSMIKQANNLLKTNIN 111
                 69************************************998887644 PP

>> SGT1  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   5.8e-05     0.074     470     563 ..      22     119 ..      14     139 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.8e-05
        SGT1 470 vdsflkalekllgskieeeldsddldedssedsdeedeedeeeeea......eeeskeeekeslksYmdqmdeELaqttvgksFekkkkkkekakkkee 562
                 +++f k l++ ++s++ +++d+dd d+d+++d+d +                +   + +  ++l +Y   + ++L+++ ++++ +  k++ ++ k++++
  CCD23266.1  22 PEEFYKFLQRYFHSDTVNDNDDDDDDDDDDDDDDDDXXXXXXX--XldvgcgTGIATFQMFKQLPEYKRIIGSDLSSSMIKQANNLLKTNINDIKENDR 118
                 6788888888888888888877665534443333333333333..134577777888899999999************999999988888888877766 PP

        SGT1 563 k 563
                 +
  CCD23266.1 119 E 119
                 5 PP

>> DUF3605  Protein of unknown function (DUF3605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   9.4e-05      0.12       8      76 ..     256     318 ..     254     324 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.4e-05
                 HHHHT-GGG----HHHHHHHHHHHHHHT....TS-HHHHHHHHHT-....STTS.TTSSGGGEEEEE-SS CS
     DUF3605   8 iieeneleklkRspsdlrrYlkfkkelkkky.gsiveyilkerlkWeeleakeelpfadeedykillNdf 76 
                 i +e ++e+++R  ++  +Y+++k++ k+ + + + ++++ e lk        +  f+  +++k+++N f
  CCD23266.1 256 ICKEMSIEEFSRYTKTFSAYHSWKHDAKNAKkKDVCDQFIAELLKI-------HPEFTLGTKVKVVWNSF 318
                 678999********************99765267888888888886.......33455555566666655 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.14       5      45 ..      65     106 ..      62     123 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                     EEEET-TTSHHHHHHHHHSTT.SEEEEEES-HHHHHHHHHHH CS
  Methyltransf_4   5 vleiGcGkGeflvalAkknPd.knflGiEirvkvvakvlkki 45 
                      l++GcG G ++ ++ k+ P+ k ++G ++++++++++++  
      CCD23266.1  65 XLDVGCGTGIATFQMFKQLPEyKRIIGSDLSSSMIKQANNLL 106
                     68******************9456999999999999988754 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   5.4     0.001       1.3      46      77 ..      29      57 ..      17      64 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.001
     DUF4611 46 lstlveqeaqddvaaagdeeeegededdeeee 77
                l+   +    d+v++++d++++++d+dd++++
  CCD23266.1 29 LQRYFHS---DTVNDNDDDDDDDDDDDDDDDD 57
                3333344...4444444444444444444443 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   9.5    0.0019       2.4     270     291 ..      36      57 ..       8      64 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0019
       NOA36 270 ddegdedddddddeedddeeed 291
                 d  +d+ddddddd++ddd+++d
  CCD23266.1  36 DTVNDNDDDDDDDDDDDDDDDD 57 
                 2333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       892  (0.0497518); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2348.07
//
Query:       CCD23267.1  [L=1185]
Description: hypothetical protein NDAI_0B02320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-59  198.6   0.2    8.1e-59  198.6   0.2    2.1  1  AAA_12           AAA domain
      2e-36  126.2   0.5    2.8e-19   69.9   0.1    4.4  2  AAA_11           AAA domain
    3.7e-12   46.8   0.0    1.1e-11   45.2   0.0    1.9  1  AAA_19           AAA domain
    1.5e-10   41.1   0.0    2.6e-09   37.1   0.0    2.2  1  AAA_30           AAA domain
    2.5e-07   30.7   2.3       0.16   11.7   0.0    4.0  4  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      1e-05   25.6   1.3    5.4e-05   23.2   0.1    2.9  2  ResIII           Type III restriction enzyme, res subunit
      3e-05   23.7   0.6      3e-05   23.7   0.6    3.5  3  UvrD-helicase    UvrD/REP helicase N-terminal domain
    0.00043   20.3   1.6     0.0041   17.1   0.3    2.6  2  ATPase_2         ATPase domain predominantly from Archaea
     0.0041   17.4   0.0      0.028   14.7   0.0    2.4  2  AAA_22           AAA domain
     0.0047   16.4   0.0      0.036   13.5   0.0    2.1  2  PhoH             PhoH-like protein
  ------ inclusion threshold ------
      0.012   16.0   0.0      0.047   14.1   0.0    2.1  1  AAA              ATPase family associated with various cellul
      0.023   14.5   0.0       0.05   13.4   0.0    1.6  1  UvrD_C_2         UvrD-like helicase C-terminal domain
      0.023   15.0   0.9       0.08   13.2   0.9    1.9  1  Ta0938           Ta0938
      0.044   13.3   4.0       0.12   11.9   0.0    2.8  3  AAA_7            P-loop containing dynein motor region
      0.044   14.1   0.0       0.11   12.9   0.0    1.6  1  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.6   0.2   6.8e-62   8.1e-59       2     198 ..     927    1155 ..     926    1156 .. 0.90

  Alignments for each domain:
  == domain 1  score: 198.6 bits;  conditional E-value: 6.8e-62
      AAA_12    2 erSlferllkke.kekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkreleaqealeepleplvfidvekseeekekke......ksyiNeeE 91  
                  e Slfer+l ++  e++++LdtqYRmhp+Is+fp ++fY g+Lkd+ ++++++l+      + ++pl+f++ ++  e++ +++       +y+N+ E
  CCD23267.1  927 EMSLFERILANGtYEQPHMLDTQYRMHPQISKFPIHKFYYGELKDGVTAEQKQLP------NIKHPLFFYQSNNGYESTVENRqngikaFTYNNKYE 1017
                  78*********9999**********************************999999......9999******9888888777767899999******* PP

      AAA_12   92 aelvvklvekllkkgseeerkkigvitpYraqvellkkklke.......keeekseke................................ievntvd 149 
                  ++ ++k++ kl+ + + + +++ig+itpY+aq +ll++ l +               +                                ++v+tvd
  CCD23267.1 1018 CQDILKILYKLILEKNVK-HEEIGIITPYSAQRDLLSELLVAdpvvnpyG-------RsmeqetdeaeflnskhtlgndiqshtvniingLHVATVD 1106
                  **************9999.8*********************855555550.......334444444567777788888888999999999******* PP

      AAA_12  150 gfQGrekdviilslVRsnekkeigflkderrlNValTRAkskliivGnk 198 
                  +fQG+ek++ii+s+VR+n++++igfl+d+rrlNValTR k+ li+vGnk
  CCD23267.1 1107 SFQGHEKNFIIFSCVRNNPENKIGFLRDRRRLNVALTRSKNGLILVGNK 1155
                  ************************************************8 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.1   2.3e-22   2.8e-19       1     121 [.     712     821 ..     712     842 .. 0.85
   2 !   64.0   0.1   1.5e-20   1.9e-17     174     256 ..     837     919 ..     822     921 .. 0.89

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 2.3e-22
      AAA_11   1 klndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgnee.. 97 
                 +lndsq+ a++++l++s  t+iqGPPGtgKT+ti e++ ql        e+ ++  iL  a SN A+D+++e++++       ++ ++ki+R+ +++  
  CCD23267.1 712 TLNDSQKLAVQHVLNNSI-TVIQGPPGTGKTSTIEEIILQL-------IENFHSFPILCVAASNIAIDNIAEKIME-------SRPNIKILRILSDKke 795
                 59***************6.**********************.......458999**********************.......*************988 PP

      AAA_11  98 ..eriseavksvsleekvekrlekee 121
                     +++ + +++l +k+ +rl+ e+
  CCD23267.1 796 sqYGPDHPLGKICLHNKIYERLSPEM 821
                 77566888888888888888876654 PP

  == domain 2  score: 64.0 bits;  conditional E-value: 1.5e-20
      AAA_11 174 rkelskeleeaeesleeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPl.rlgakkvvLvGDpkQLpa 256
                 +k+ ++++ +++ s++++++ +++i++tT+ +ag ++l+ ++ +  vvi DE +q+ E+stl+Pl + g+kk+v vGD kQL +
  CCD23267.1 837 SKNQDNKYYQEKTSITNKLVAQTQIIFTTNITAGGRQLKVIK-ELPVVIMDESTQSSEASTLVPLsLPGIKKFVFVGDEKQLSS 919
                 45567788999999***************************7.**********************55688************86 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   9.6e-15   1.1e-11       1     143 [.     717     919 ..     717     922 .. 0.76

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 9.6e-15
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal..................... 77 
                 q+ av+  l++++ ++ ++pGtGKT ++++i+  l+e+ +    +il+va  + A ++++e++ +   +++ +  l+                      
  CCD23267.1 717 QKLAVQhVLNNSITVIQGPPGTGKTSTIEEIILQLIENFHS--FPILCVAASNIAIDNIAEKIMESRPNIKILRILSDkkesqygpdhplgkiclhnki 813
                 788998899**************************999966..9*******************555555666666655777778888888888888888 PP

      AAA_19  78 ..........................................ldfddlltealelle........eaeeekklqeee.llivDEfqdvdelqyrLlkal 125
                                                           + +++         +           ++ k+ +e  ++i DE+ + +e   +L+   
  CCD23267.1 814 yerlspemkdiankfrfgrrdevsknqdnkyyqektsitnklV-AQT---------QiifttnitAGGRQLKVIKELpVVIMDESTQSSEA-STLVPLS 901
                 8899999999999999999999999999888777776665542.222.........0222334433334444447777******9987765.5566555 PP

      AAA_19 126 lgek.kklllvGDpdQliy 143
                 l ++ kk+++vGD++Ql +
  CCD23267.1 902 L-PGiKKFVFVGDEKQLSS 919
                 5.44477*********976 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   2.2e-12   2.6e-09       1     131 [.     712     920 ..     712     959 .. 0.77

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 2.2e-12
      AAA_30   1 elnaeQaaavealltsgdrvavltGpAGtGKttalkal.reaweaa.ggrviglAptgkaAkvLaeelgi..eastiakllkrlk.............. 81 
                 +ln++Q+ av+++l+++  ++v++Gp+GtGKt +++++  +++e+   ++++ +A ++ a +++ae++    +   i ++l                  
  CCD23267.1 712 TLNDSQKLAVQHVLNNS--ITVIQGPPGTGKTSTIEEIiLQLIENFhSFPILCVAASNIAIDNIAEKIMEsrPNIKILRIL---Sdkkesqygpdhplg 805
                 699***********999..9*****************97889998878*****************7654211222333333...233466677777777 PP

      AAA_30  82 ..................................................................grarlepg.tllivDEagmvdtkqlaallkaae 113
                                                                                   ++ ++ ++  ++i DE+    ++++ +l+    
  CCD23267.1 806 kiclhnkiyerlspemkdiankfrfgrrdevsknqdnkyyqektsitnklvaqtqiifttnitaggRQLKVIKElPVVIMDESTQ--SSEASTLVPLSL 902
                 7777777777777777777777777777777777777777777777777777777***999999995566666669999999876..556777888777 PP

      AAA_30 114 kagakvilvGDerQlasV 131
                     k ++vGDe+Ql+s 
  CCD23267.1 903 PGIKKFVFVGDEKQLSSF 920
                 75699**********985 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.0       5.1   6.1e+03     137     188 ..     350     398 ..     303     411 .. 0.56
   2 !    6.1   0.0    0.0069       8.3       1      21 [.     730     750 ..     730     774 .. 0.84
   3 !   10.0   0.0   0.00043      0.52      63     121 ..     880     933 ..     865     981 .. 0.87
   4 !   11.7   0.0   0.00014      0.16     172     233 ..    1084    1152 ..    1051    1153 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.1
  Viral_helicase1 137 ilsakvgteveversgelkvetepkgq.e.kvlvyltftqalkealgvrevttv 188
                      +++ + +t++++  +   ++  +pk + + ++ ++++ +q++k+a + + ++ v
       CCD23267.1 350 QNKNS-NTTKSTGWA---QGFEAPKKVkNmPKSILEPTVQNTKNAKKKT-SKAV 398
                      33332.222222222...2234444443467777888888888777766.4444 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0069
  Viral_helicase1   1 ivvhGvpGcGKStlirkllrt 21 
                      +v++G pG GK++ i +++ +
       CCD23267.1 730 TVIQGPPGTGKTSTIEEIILQ 750
                      69***************9987 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00043
  Viral_helicase1  63 gkililDEylllhaGyilllaalskaklvilfGDplQipfhsrnasfllahlpsslshr 121
                        ++i+DE ++   +  l+ + l+++k ++ +GD++Q ++ s      ++hl+ sl +r
       CCD23267.1 880 LPVVIMDESTQSSEASTLVPLSLPGIKKFVFVGDEKQLSSFS-----NIPHLEMSLFER 933
                      5689**********999999*******************998.....566666666554 PP

  == domain 4  score: 11.7 bits;  conditional E-value: 0.00014
  Viral_helicase1  172 ftqalkealgvr.....evttvhevqGltfdkVtlvllketdlelis..esrenllvAlTRhrkslvil 233 
                          ++ +++ v+     +v tv + qG + +  ++ + ++++++ i   ++r  l vAlTR++++l+++
       CCD23267.1 1084 TLGNDIQSHTVNiinglHVATVDSFQGHEKNFIIFSCVRNNPENKIGflRDRRRLNVALTRSKNGLILV 1152
                       345667777777888999*********998888776666666554446799*************99875 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       3.7   4.4e+03      66      95 ..     379     410 ..     362     427 .. 0.53
   2 !   23.2   0.1   4.6e-08   5.4e-05       4     141 ..     713     888 ..     710     912 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.7
                 HHHHHHHHGGGGTGG......GEEEESSS-B- CS
      ResIII  66 lleqtleefkkflseayke..igkkvsgdkkk 95 
                 +le t ++ k+ ++++ k+  ++k +s+++ +
  CCD23267.1 379 ILEPTVQNTKNAKKKTSKAveKTKQISKKHVN 410
                 44444444444444444332222222222222 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 4.6e-08
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG............................ CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef............................ 74 
                 l++ Q+ a++ +l      ++   +i+ + GtGKT ++ ++i +l ++++   +l ++ +++ ++   e++                            
  CCD23267.1 713 LNDSQKLAVQHVL------NNSITVIQGPPGTGKTSTIEEIILQLIENFHSFPILCVAASNIAIDNIAEKImesrpnikilrilsdkkesqygpdhplg 805
                 5666777777776......455689************************************99999999995555666666666666555555555555 PP

                 .........GGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH.................................HHHTTT-SEEEEE CS
      ResIII  75 .........kkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee.........................eeeseellrdrfdviiiD 139
                          +++++e ++ +                  +k+ +   ++++++++++                            ++ +  ++ +v+i+D
  CCD23267.1 806 kiclhnkiyERLSPEMKDIA------------------NKFRFGRRDEVSKNQDNKyyqektsitnklvaqtqiifttnitAGGRQLKVIKELPVVIMD 886
                 55444444422222222222..................2222222222222222222222211111111112333333332444445666666699999 PP

                 TG CS
      ResIII 140 Ea 141
                 E+
  CCD23267.1 887 ES 888
                 97 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.2      0.63   7.5e+02     131     209 ..     124     232 ..      10     261 .. 0.62
   2 ?    3.2   4.9     0.043        52     110     201 ..     358     503 ..     288     572 .. 0.67
   3 !   23.7   0.6   2.5e-08     3e-05       1     111 [.     713     815 ..     713    1039 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.63
                    HHHHHHHHHSC.HSHTTTTHHHHHHHHHHHHHHCCCCCH.....................................................HHHC CS
  UvrD-helicase 131 qqellkellek.saddslnldkkkleklikelsksrnik.....................................................keel 172
                    q+ l  ++l++  +                        +                                                         
     CCD23267.1 124 QLILCDNCLKDdPK------------------------QdsskfvsektgkflytflgiketsssssskfkrkgggrkigrgkkrgrggaksASSS 195
                    33333333322222........................2444444444444444455555666777888888888888888888888888766666 PP

                    CCHHHHHCHHHHHHHHHHHTTCCTTHHCHSSTSCSHH CS
  UvrD-helicase 173 slskskaeelrelvskakekqlspkelkkafekasdl 209
                    s+ k+k ++   +++k+ ++ l++k+l++ +e+ s+l
     CCD23267.1 196 SAGKKKEKKPLTFLQKLDKEALKTKKLNSTIESGSNL 232
                    6777777777888888888888888888877444443 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.043
                    GGTTSHTTTEEECHHHHHHCCHHHHHHHHHSCHSHTTTTHHHHHHHHHHHHHHCCCCCH..................................... CS
  UvrD-helicase 110 nrigldpnfrildeedeedlkqqellkelleksaddslnldkkkleklikelsksrnik..................................... 168
                    ++ g+ ++f+  ++ +   +  +++l+  ++  ++++ + +++k+ +++k++sk++ ++                                     
     CCD23267.1 358 KSTGWAQGFEAPKKVK---NMPKSILEPTVQ--NTKNAKKKTSKAVEKTKQISKKHVNQkghtesnpkpvvpidedfwssgwdnalpekegvtasi 448
                    3444666666655555...455666666665..44444555555555678888888888888888888888****************977777777 PP

                    ......................HHHCCCHHHHHCHHHHHHHHHHHTTCCTTHHCH CS
  UvrD-helicase 169 ......................keelslskskaeelrelvskakekqlspkelkk 201
                                          + +++++++k +++r   ++ kek  +p  + k
     CCD23267.1 449 sspqptrikqngnqkkelipipSNKEKGQNRKNQNTRSNKNNTKEKTPIPPIQHK 503
                    7777766665555555555555555555555555555555555555555444444 PP

  == domain 3  score: 23.7 bits;  conditional E-value: 2.5e-08
                    SSHHHHHHHHS.-SSEEEEEE-.TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH.........HHHHCCHHCTT-HHHHHH CS
  UvrD-helicase   1 lnpeqreaias.lggpilveAs.AGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee.........alkkaeqessdderlrla 85 
                    ln++q+ a+++ l+++i v+ + +G+GKT +++e il+li++   +   il+v   n A + + e+i e         +                 
     CCD23267.1 713 LNDSQKLAVQHvLNNSITVIQGpPGTGKTSTIEEIILQLIENF--HSFPILCVAASNIAIDNIAEKIMEsrpnikilrI----------------- 789
                    6899*****999676666655528****************987..8999******************994444444441................. PP

                    HHHCTTSEEEEHHHHHHHHHHHHHGG CS
  UvrD-helicase  86 lqnlseanisTlHsfcqkilkkeanr 111
                    l+  +e + +  H +++  l++++++
     CCD23267.1 790 LSDKKESQYGPDHPLGKICLHNKIYE 815
                    33333333333333333333333333 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.28   3.4e+02      72     126 ..     369     427 ..     347     435 .. 0.71
   2 !   17.1   0.3   3.4e-06    0.0041      19     129 ..     726     890 ..     718     898 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.28
    ATPase_2  72 eeekkklekalgiavpkaeleeilk.eksklvfkaielllekikkkgkk.....iiiiiDe 126
                  +++k++ k +++++ +++ ++  k ++sk v+k  +  ++ +++kg       +++ iDe
  CCD23267.1 369 PKKVKNMPKSILEPTVQNTKNA--KkKTSKAVEKTKQISKKHVNQKGHTesnpkPVVPIDE 427
                 4555566666667766666633..3377788888888888899999987888889999998 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 3.4e-06
    ATPase_2  19 pneiyfiYGpegsGKtaLlkeiienl.edkdkyviyyialreesiskldefieeeeekkklekal.................................. 82 
                 +n+i +i Gp g GKt+ + eii +l e+ +   i   a ++++i+++ e+i e++ + k+ + l                                  
  CCD23267.1 726 NNSITVIQGPPGTGKTSTIEEIILQLiENFHSFPILCVAASNIAIDNIAEKIMESRPNIKILRILsdkkesqygpdhplgkiclhnkiyerlspemkdi 824
                 579********************99989999999*******************9999999988888888999999999999999999999999999999 PP

    ATPase_2  83 ..................giavpkaeleeilk.eksklvfkaielllekikkkgkkiiiiiDelqk 129
                                   +   +k+++ + l  +++   + +i++  +++k  +  +++i+De  +
  CCD23267.1 825 ankfrfgrrdevsknqdnKYYQEKTSITNKLVaQTQIIFTTNITAGGRQLKVIKELPVVIMDESTQ 890
                 888888886555555543111122222222222333344445555555555555558888888655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.8   3.3e+03      52      99 ..     375     427 ..     366     427 .. 0.78
   2 !   14.7   0.0   2.4e-05     0.028       5      32 ..     727     753 ..     724     796 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.8
      AAA_22  52 sskdllrellralglelka....erlsseellealeqalrarav.ielliiDE 99 
                  +k++l+  ++++++ +k+     +++++   ++++q  ++ +  ++++ iDE
  CCD23267.1 375 MPKSILEPTVQNTKNAKKKtskaVEKTKQISKKHVNQKGHTESNpKPVVPIDE 427
                 57778888888888877778886677777777999999999999999999998 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 2.4e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldee 32 
                  +i+v+ G++GtGKT +++++  ql  e
  CCD23267.1 727 NSITVIQGPPGTGKTSTIEEIILQLI-E 753
                 6899*******************983.2 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     3e-05     0.036       5      34 ..     713     742 ..     711     770 .. 0.88
   2 ?   -0.2   0.0      0.46   5.5e+02      94     161 ..     850     920 ..     808     939 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3e-05
                 -SHHHHHHHHHHHH-SEEEEE--TTSSTTH CS
        PhoH   5 ktkeQkeylealkkndivfaiGpaGtGKty 34 
                  + +Qk +++ + +n+i+++ Gp GtGKt 
  CCD23267.1 713 LNDSQKLAVQHVLNNSITVIQGPPGTGKTS 742
                 6789*************************6 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.46
                 TCHHHHHHTTSEEEEEGGGGTT--B-SE....EEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE-------- CS
        PhoH  94 ekvekllekgkievaplaymRGrTlnda....fvilDEAQnttkeqmkmfltRlGenskvvvtGdvtqidlp 161
                 + ++kl+ + +i ++      Gr l+      +vi+DE+   +++++ + l+  G   k+v++Gd +q    
  CCD23267.1 850 SITNKLVAQTQIIFTTNITAGGRQLKVIkelpVVIMDESTQSSEASTLVPLSLPGI-KKFVFVGDEKQLSSF 920
                 556677777777777777777777764222238999*9988888888777776665.599999999997665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     4e-05     0.047       3      35 ..     732     769 ..     730     794 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4e-05
                 EESSTTSSHHHHHHHHHHHH.....THEEEEEETTTCS CS
         AAA   3 lyGppGtGKTllakavakel.....gvefleisgsell 35 
                 + GppGtGKT++++ ++ +l     ++++l + +s++ 
  CCD23267.1 732 IQGPPGTGKTSTIEEIILQLienfhSFPILCVAASNIA 769
                 67**************9998554444555555555554 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.2e-05      0.05       3      52 .]    1101    1152 ..    1099    1152 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.2e-05
    UvrD_C_2    3 yaltihkaQGsefpaVivfdpdlaaarmgel......rrrlLYtavTRAreklilv 52  
                  ++ t+  +QG e +++i+      + ++          rr L +a+TR++  lilv
  CCD23267.1 1101 HVATVDSFQGHEKNFIIF--SCVRNNPE--NkigflrDRRRLNVALTRSKNGLILV 1152
                  6789************99..44444332..23578899****************98 PP

>> Ta0938  Ta0938
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.9   6.7e-05      0.08      31      96 ..      58     123 ..      49     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.7e-05
                 -TT--BSSS--SSSS-TTS-THHHHHHHHHHHS---EE---TTT-S--EEEE-----TT-SS---- CS
      Ta0938  31 vdgeklffccdicakefvnllnevkkrtglskideleingnyykgrnveaksgekelkfyvkfndd 96 
                 + ge++++ c+ c ++  n+ ++ k   +ls+   l+   ny k r+++ k+ ++e ++ v+++++
  CCD23267.1  58 IGGEDIILICNSCVEKKFNINEKPKTSYSLSNGAILKYWDNYTKVRDCSCKRCGNESNLNVNLTNK 123
                 78*****************************************************99999998775 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.9      0.25   2.9e+02      33      99 ..     266     331 ..     260     335 .. 0.87
   2 ?   11.9   0.0   9.8e-05      0.12      27      67 ..     721     760 ..     712     797 .. 0.73
   3 ?   -2.8   0.0       3.1   3.7e+03     134     163 ..     843     873 ..     840     874 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.25
       AAA_7  33 kkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpgg 99 
                   ++l  G+t ++K++  + ++++   +++++ +   ++qt++n + + i   +  +  +  gP+ +
  CCD23267.1 266 TGNFLSLGNTNSSKSSSPSPIIQHPA-QRTNTRQKPNQKQTKSNPTSRAITPDISTKGSKHKGPKVT 331
                 5688999***********99998877.88999999999*************9999999999898865 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 9.8e-05
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkldkekylslti 67 
                  +++ n+  +++ Gp GtGKt++i++++ +l  e++ s  i
  CCD23267.1 721 VQHVLNNSITVIQGPPGTGKTSTIEEIILQLI-ENFHSFPI 760
                 566777888899**************766666.45554444 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.1
       AAA_7 134 gwYdrkk.lefkeikdvqlvaamgppgggrn 163
                  +Y+ k+ ++ k +  +q++   + ++ggr+
  CCD23267.1 843 KYYQEKTsITNKLVAQTQIIFTTNITAGGRQ 873
                 5677755258888999999999999999986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.2e-05      0.11      25      51 ..     728     754 ..     715     801 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.2e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd 51 
                 +++++ G++G+GK+s ++e+  +l ++
  CCD23267.1 728 SITVIQGPPGTGKTSTIEEIILQLIEN 754
                 6899**************998777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1581  (0.0881812); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.05u 0.29s 00:00:01.34 Elapsed: 00:00:00.50
# Mc/sec: 7130.61
//
Query:       CCD23268.1  [L=268]
Description: hypothetical protein NDAI_0B02330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-105  351.7   4.3   1.5e-105  351.7   4.3    1.5  2  14-3-3    14-3-3 protein
     0.0049   16.9   2.0      0.013   15.5   2.0    1.8  1  FlaF      Flagellar protein FlaF
  ------ inclusion threshold ------
        5.3    8.1   6.1       0.81   10.7   0.2    2.5  3  FRG       FRG domain


Domain annotation for each model (and alignments):
>> 14-3-3  14-3-3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.7   4.3  2.5e-109  1.5e-105       1     222 []      11     234 ..      11     234 .. 0.99
   2 ?   -4.2   2.3       1.7     1e+04      62      74 ..     245     254 ..     237     264 .. 0.36

  Alignments for each domain:
  == domain 1  score: 351.7 bits;  conditional E-value: 2.5e-109
                 HHHHHHHCCHHHHHHHHHCHHHHCSS---HCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCTCC..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
      14-3-3   1 laklaeqaeryddmveymkkvvelkeeLskeernlLsvayKnvvgarRaswrvlssieqkeeske..ekkvelikeyrekiekeLkeiceevlelldkt 97 
                 laklaeqaery++mve mk+v+++++eLs+eernlLsvayKnv+garRaswr++ssieqkeeske  e++veli+ yr+kie+eL++i  ++l++ld++
  CCD23268.1  11 LAKLAEQAERYEEMVENMKDVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKEksEHQVELIRSYRSKIETELTKISADILSVLDSH 109
                 69***********************************************************99998889999*************************** PP

                 CHCH.-SHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHTTTGCC-HHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHCCHCCC CS
      14-3-3  98 lipkatseeskvfylkmkgDyyRYlaEfaegeekkeaaekakeaYeeAleiakkelqpthpirLglaLNySVflyeilnspekAcelakkafdeaiael 196
                 lip+a++ eskvfy+kmkgDy+RYlaEf++g+ +++a++++ eaY++A+eia+++l+pthpirLglaLN+SVf+yei+nsp+kAc+lak+afd+aiael
  CCD23268.1 110 LIPSASTGESKVFYYKMKGDYHRYLAEFSSGDVRENATTSSLEAYKKASEIATTDLPPTHPIRLGLALNFSVFYYEIQNSPDKACHLAKQAFDDAIAEL 208
                 **999********************************************************************************************** PP

                 CCS.TTTHHHHHHHHHHHHHHHHHHC CS
      14-3-3 197 delseesykdstlilqlLrdnltlWt 222
                 d+lseesykdstli+qlLrdnltlWt
  CCD23268.1 209 DTLSEESYKDSTLIMQLLRDNLTLWT 234
                 *************************8 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.7
                 CTCCHHHHHHHHH CS
      14-3-3  62 eskeekkvelike 74 
                 e+++   ++++++
  CCD23268.1 245 EQQQ---QQQAQQ 254
                 1111...111111 PP

>> FlaF  Flagellar protein FlaF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   2.0   2.2e-06     0.013       5      72 ..     183     250 ..     180     258 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.2e-06
        FlaF   5 YaeaaestasprelEaealtraaakLkaaeeagkeseeelaeAlkfnrrlWtilaedlaspenplpee 72 
                 Y e+++s +++ +l ++a++ a+a+L + +e++ ++++ +++ l++n  lWt  ++++ ++e+++ ++
  CCD23268.1 183 YYEIQNSPDKACHLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMSEAGQEEEQQQQQ 250
                 8899999999*********************9999987777************999999988887665 PP

>> FRG  FRG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.2   1.3e+04      30      45 ..      18      33 ..       4      49 .. 0.55
   2 ?   10.7   0.2   0.00014      0.81       7      52 ..      55      99 ..      54     114 .. 0.79
   3 ?   -0.9   0.3      0.55   3.3e+03      13      42 ..     219     254 ..     209     266 .. 0.47

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.2
         FRG 30 lesekrlleefkklar 45
                 e+ ++++e++k  a 
  CCD23268.1 18 AERYEEMVENMKDVAS 33
                3444445555554444 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00014
         FRG  7 GqrdadwrlipsleRekkkklsklesekrlleefkklarealeeea 52
                G r a+wr+++s+e ++++k +k+e++ +l+++++++++  l++++
  CCD23268.1 55 GARRASWRIVSSIEQKEESK-EKSEHQVELIRSYRSKIETELTKIS 99
                7899***********99777.5699999999999999887776655 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.55
         FRG  13 wrlipsleRekkkklsk......lesekrlleefkk 42 
                   li +l R++   +++      +e+e++  ++ ++
  CCD23268.1 219 STLIMQLLRDNLTLWTSdmseagQEEEQQQQQQAQQ 254
                 456666777666665554433332222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2896  (0.161526); expected 358.6 (0.02)
Passed bias filter:                      828  (0.0461822); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.31s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 1689.53
//
Query:       CCD23269.1  [L=455]
Description: hypothetical protein NDAI_0B02340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.1e-122  405.9   0.0   1.2e-121  405.3   0.0    1.2  1  E1_dh           Dehydrogenase E1 component
     0.0043   16.3   0.0     0.0081   15.4   0.0    1.4  1  DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
  ------ inclusion threshold ------
      0.011   16.3   1.5       0.13   12.9   0.0    2.5  2  ABC_trans_N     ABC-transporter N-terminal
      0.044   14.8   3.0       0.72   10.9   0.1    3.2  3  KRTAP7          KRTAP type 7 family
          2    7.7   6.7        3.1    7.0   3.9    2.1  2  NOA36           NOA36 protein
        2.4    6.8   4.7        3.4    6.3   4.7    1.1  1  Presenilin      Presenilin


Domain annotation for each model (and alignments):
>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.3   0.0  3.9e-125  1.2e-121       2     299 ..     122     416 ..     121     417 .. 0.98

  Alignments for each domain:
  == domain 1  score: 405.3 bits;  conditional E-value: 3.9e-125
                 HHHHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TTSEEEESS--HHHHHHTT--HHHHHHHHTT-T....TTSSGTT-.-E..BTT..B CS
       E1_dh   2 klvllrrvedaldalykrkkrigfyhlsagqealkvgiaaalekeDliiteYReagvllarglsleeilaeltgkv....kgkggsrhelmyaekesri 96 
                 ++ ++rr+e+a+dalyk+kk++gf+hls+gqea++vgi++a++k D++it+YR++g++++rg+s++++lael+g++     gkggs+h l+  + +  +
  CCD23269.1 122 DMIIIRRMEMACDALYKAKKIRGFCHLSVGQEAIAVGIENAITKLDSVITSYRCHGFTFMRGASVKAVLAELMGRRagvsFGKGGSMH-LY--APG--F 215
                 6899************************************************************************99999*******.88..788..* PP

                 EEE-SSTTTHHHHHHHHHHHHHHHTS---EEEEEEGGGTT-HHHHHHHHHHHHTT--EEEEEEEESEETTEEHHHH-S---GGG..TTTTS-EEEEETT CS
       E1_dh  97 lggngivgaqvplvaGialaakiegkkevailliGDgAanqGdvyealnlaalwklpvifvveNNkygisTeaekasaskeladrargvgipglrVdgn 195
                 +ggngivgaqvpl+aG+a+a++++++++++++l+GDgA+nqG+v+e++n+a+l++lpv+f++eNNkyg++T+a+++sa++e+++  rg++ipg++V+g+
  CCD23269.1 216 YGGNGIVGAQVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQVFESFNMAKLFNLPVVFCCENNKYGMGTSASRSSAMTEYFK--RGQYIPGIKVNGM 312
                 ************************************************************************************..************* PP

                 SHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHS CS
       E1_dh 196 DplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvseeelkeiekevrkeveeavkkaesk 294
                 D+lavy+A++fA++++ +gkgpll+e+ tYRyggHs+sD+++tyrtr+e++++r+k+dpi++lk++L + +++++ee k+++k++rk v+e+v+ a+++
  CCD23269.1 313 DILAVYQASRFAKDWCLSGKGPLLLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLKMHLLELDIATDEEIKAYDKSARKYVDEQVELADAA 411
                 *************************************************************************************************99 PP

                 ----G CS
       E1_dh 295 kelep 299
                   +ep
  CCD23269.1 412 AAPEP 416
                 99887 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.7e-06    0.0081     116     178 ..     225     287 ..     217     326 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.7e-06
  DXP_synthase_N 116 sisaalGlavardlkgekkkvvaviGDgaltgGmafealnnigelkkkllvilNdNemsiskn 178
                      +  + Gla a+++k+e+    ++ GDga   G  fe++n ++  +  ++    +N+  + ++
      CCD23269.1 225 QVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQVFESFNMAKLFNLPVVFCCENNKYGMGTS 287
                     566789***************************************999999999998765443 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.6       0.3     9e+02      19      27 ..      55      74 ..      38     101 .. 0.44
   2 ?   12.9   0.0   4.3e-05      0.13      21      71 ..     385     433 ..     353     446 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.3
  ABC_trans_N 19 s..........e.sssedee 27
                 s          + +++e+e+
   CCD23269.1 55 StatseqqqqdQpEQEENES 74
                 22222222222121111111 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.3e-05
  ABC_trans_N  21 sssedeeeedseFdlekwlknlreridrdgikprklGVvFknLtVeGvgsg 71 
                   ++e+ ++ d   +++k++ + +e++d++  + +kl + F++  V+G+ + 
   CCD23269.1 385 ATDEEIKAYD--KSARKYVDEQVELADAAAAPEPKLSILFEDVYVKGTETP 433
                  4555555556..99*********************************9876 PP

>> KRTAP7  KRTAP type 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.5   4.5e+03      37      45 ..     197     205 ..     167     241 .. 0.49
   2 ?    2.5   0.1     0.096   2.9e+02      33      69 ..     225     261 ..     218     267 .. 0.86
   3 ?   10.9   0.1   0.00024      0.72       1      68 [.     294     356 ..     294     360 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
      KRTAP7  37 gsplnygyg 45 
                  + + +g g
  CCD23269.1 197 RAGVSFGKG 205
                 333333333 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.096
      KRTAP7  33 vvplgsplnygygyngysslgysfggsnlsnlgccyg 69 
                  vplg+ l +   y+   + +++  g   sn+g  + 
  CCD23269.1 225 QVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQVFE 261
                 59************99999999999999999987765 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00024
      KRTAP7   1 mtrffscgsyfpgylsygtnfhrtfratplncvvplgsplnygygyngysslgysfggsnlsnlgccy 68 
                 mt +f  g+y+pg    g ++   ++a+ +     l      g g       +y +gg  +s++g +y
  CCD23269.1 294 MTEYFKRGQYIPGIKVNGMDILAVYQASRFAKDWCLS-----GKGPLLLEYETYRYGGHSMSDPGTTY 356
                 99*************************9987655553.....55656666678999999999999988 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.9     0.001       3.1     253     304 ..      35      86 ..      23      91 .. 0.58
   2 ?    0.9   0.0     0.077   2.3e+02      38      59 ..     129     150 ..     123     178 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.001
       NOA36 253 dsdydaylkalasgddeddegdedddddddeedddeeeddedeeeeeeeese 304
                 ++ y++y++ + +++ ++de+    +++++++ ++ee++  ++++e++++++
  CCD23269.1  35 KTTYNQYTRRTMASTTNADESTATSEQQQQDQPEQEENESIEQDQEQQSSKD 86 
                 5667888766555555555555555555555555555555555555554444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.077
       NOA36  38 asmecdkcerkqknrafcyfcq 59 
                 + m cd   + +k r fc++  
  CCD23269.1 129 MEMACDALYKAKKIRGFCHLSV 150
                 5799**************9865 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   4.7    0.0011       3.4     233     278 ..      39      84 ..       8     114 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0011
  Presenilin 233 aeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseee 278
                 ++ ++++ a+++++ +s++++e++++++ ++++++s e+++e++++
  CCD23269.1  39 NQYTRRTMASTTNADESTATSEQQQQDQPEQEENESIEQDQEQQSS 84 
                 1111111111111111111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1960  (0.10932); expected 358.6 (0.02)
Passed bias filter:                      941  (0.0524848); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 3166.47
//
Query:       CCD23270.1  [L=361]
Description: hypothetical protein NDAI_0B02350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.4e-112  375.1   0.0   1.8e-112  374.8   0.0    1.1  1  Rad51       Rad51
    2.5e-10   40.3   0.1    3.6e-10   39.8   0.1    1.2  1  RecA        recA bacterial DNA recombination protein
    2.9e-08   33.4   0.1    6.6e-08   32.2   0.1    1.7  1  ATPase      KaiC
    7.3e-07   29.0   0.0      1e-06   28.4   0.0    1.2  1  AAA_25      AAA domain
  ------ inclusion threshold ------
      0.054   13.6   0.3       0.35   11.0   0.0    2.0  2  CAMSAP_CKK  Microtubule-binding calmodulin-regulated spectrin
       0.18   10.9   0.1       0.35    9.9   0.1    1.4  1  PAXNEB      PAXNEB protein


Domain annotation for each model (and alignments):
>> Rad51  Rad51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.8   0.0    6e-116  1.8e-112       2     254 ..     106     358 ..     105     359 .. 0.99

  Alignments for each domain:
  == domain 1  score: 374.8 bits;  conditional E-value: 6e-116
                 S-EBHHHHHHHHHSS-EE--S-HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHHHHTTS-TTTS--SSEEEEEESSS---GGGGHHHHHHTT--HH CS
       Rad51   2 gfvsavellekrsellqlttGskklDelLgGGietgsiteifGefrsGktqlchtlcvtvqlplelgGgegkavyidtegtfrperlveiaerykldke 100
                 gf+ a+  l  r+++  l+tGsk+lD++LgGGi+++site+fGefr+Gktq++htlcvt qlp e+gG+egk++yidtegtfrper+ +ia+ y+ld++
  CCD23270.1 106 GFIPATVQLDIRQKVFALSTGSKQLDSILGGGIMSMSITEVFGEFRCGKTQMSHTLCVTSQLPREMGGAEGKVAYIDTEGTFRPERIKQIAQNYDLDPD 204
                 89999********************************************************************************************** PP

                 HHGGGEEEEE--STTHHHHHHHHTHHHHHHS-EEEEEEETTTGGGCH-------THHHHHHHHHHHHHHHHHHHHH--EEEEEEE-------.------ CS
       Rad51 101 evlenvayaRaytiehqeellqqaaallaedkfallivDsvtalyRtdfsgrgelakRqqklgkllrtLrkladefevavvitnqvvaqvdgqaalfsa 199
                 ++lenv+yaRa ++ehq+el++q+ + l++ +++l+i+Ds++a++R+d++grgel++Rqqkl+++l +L+++a+ef+vav++tnqv+++++++a + sa
  CCD23270.1 205 SCLENVSYARALNSEHQMELVEQLGEALSSGEYRLVIMDSIMANFRVDYTGRGELNERQQKLNQHLFRLNRMAEEFNVAVFMTNQVQSDPGASALFASA 303
                 ********************************************************************************************99999** PP

                 ------HHHHHHHH-SEEEEEEE-STTEEEEEEES-SSS-S-EEEEEEETTEEE- CS
       Rad51 200 dpkkPigGlvlahasttRlalrkgkgeeRivkvvdsPnlpeleavfaigeeGied 254
                 d +kP+gG+vlahas+tR+ lrkg+g+eR++k++dsP++pe+e+v++ige+Gi+d
  CCD23270.1 304 DGRKPVGGHVLAHASATRILLRKGRGDERVAKLQDSPDMPERECVYVIGEKGITD 358
                 *****************************************************98 PP

>> RecA  recA bacterial DNA recombination protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   1.2e-13   3.6e-10      26     221 ..     115     326 ..      93     342 .. 0.73

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 1.2e-13
                 -.-----EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH..H....TT--EEEEESS----HHHHHHTT....--....GGG-EE CS
        RecA  26 keklkvetissGslaldialGiGGlpkGriieiyGpessGkttlalhaiaeaq..k....kggvaafidaehaldpkyakklG....vd....idellv 110
                 + ++kv ++s+Gs +ld+ lG GG+    i+e++G    Gkt ++  + + +q  +    + g +a+id+e ++ p+  k++     +d    ++++  
  CCD23270.1 115 DIRQKVFALSTGSKQLDSILG-GGIMSMSITEVFGEFRCGKTQMSHTLCVTSQlpRemggAEGKVAYIDTEGTFRPERIKQIAqnydLDpdscLENVSY 212
                 3457999**************.99******************99765555444223222256789**********987666541111553333456667 PP

                 E--SSHHHHHHHHHHH...HTTT--SEEEEE-TTT---.STT-----------HHHHHHHHHHHHHHHHHTTT--EEEEEEE-------..------.. CS
        RecA 111 sqpdtGeqaleiadal...vrsgaidlivvdsvaalvp.kaeieGemgdskvglqarlmsqalrkltgaisksntvvifinqirekiGv..mfgnpe.. 201
                 ++  + e+ +e++++l   + sg   l+++ds+ a         Ge+++ +       + q l +l+ + ++ n++v + nq++   G   +f + +  
  CCD23270.1 213 ARALNSEHQMELVEQLgeaLSSGEYRLVIMDSIMANFRvDYTGRGELNERQQK-----LNQHLFRLNRMAEEFNVAVFMTNQVQSDPGAsaLFASADgr 306
                 78899*********995556799*********988654033345666665443.....4677888999999*************998852267766511 PP

                 ----HHHHHHH-SEEEEEEE CS
        RecA 202 tttGGralkfyasvrldvrr 221
                    GG+ l   ++ r+ +r+
  CCD23270.1 307 KPVGGHVLAHASATRILLRK 326
                 45799999999999988887 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1   2.2e-11   6.6e-08       2     194 ..     124     331 ..     123     357 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.2e-11
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgae..k...ygepgvfvtveepa..edlrenakslGwdlekleeegklaiidasesae 93 
                 +tg + lD il gGi++ +++ + Ge  +GKt ++ +  +++    +    + ++ ++ +e +   e +++ a++ + d +   e+  + +  a +s  
  CCD23270.1 124 STGSKQLDSILGGGIMSMSITEVFGEFRCGKTQMSHTLCVTSQLprEmggAEGKVAYIDTEGTFrpERIKQIAQNYDLDPDSCLEN--VSYARALNS-- 218
                 7999**********************************998754112111346899*****97555****************9999..455445444.. PP

      ATPase  94 esaeekdkedleelieelaeaikeikakrvviDsi........tgl.ayeekeavaReilrqlvrvlkklgvTailvsekss............seeaa 171
                         e  +el+e+l ea+++ + + v++Dsi        tg  + +e+++++ + l++l r+ ++ +v   ++++++s            + + +
  CCD23270.1 219 --------EHQMELVEQLGEALSSGEYRLVIMDSImanfrvdyTGRgELNERQQKLNQHLFRLNRMAEEFNVAVFMTNQVQSdpgasalfasadGRKPV 309
                 ........3447788888888888888888888883222222222234678899999**********************99988888888877777777 PP

      ATPase 172 ggygveefivdgvivLdlkeiee 194
                 gg+ +++ ++   i L++ + +e
  CCD23270.1 310 GGHVLAH-ASATRILLRKGRGDE 331
                 7777777.777777777655555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   3.5e-10     1e-06      20     189 ..     128     290 ..     113     295 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 3.5e-10
      AAA_25  20 pprrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaEdsedelrrRlravgeal..rddarllvldlagveslpL 116
                 ++++ +++g +   +++ ++G   +GKt +   l+++  + +    ++    gkV y+++E++    ++R++++ +++  ++d+ l  +++a+     L
  CCD23270.1 128 KQLDSILGGGIMSMSITEVFGEFRCGKTQMSHTLCVTSQLPR----EMGGAEGKVAYIDTEGTF--RPERIKQIAQNYdlDPDSCLENVSYARA----L 216
                 56777788777789999999********98776666555544....45569************8..799******9995555666666666554....2 PP

      AAA_25 117 fakdrggtlltadvdaleaaieevegvrlvviDplsralggdensnsd.......vgalvealeriarrtgaavllvhHv 189
                     ++++   + v++l +a+ +  ++rlv+ D++ + ++ d +   +        ++ + +l+r+a+++++av+++ +v
  CCD23270.1 217 ---NSEHQ--MELVEQLGEALSS-GEYRLVIMDSIMANFRVDYTGRGElnerqqkLNQHLFRLNRMAEEFNVAVFMTNQV 290
                 ...22333..377999*******.89**********99988655555544444545999999*************99876 PP

>> CAMSAP_CKK  Microtubule-binding calmodulin-regulated spectrin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.35      49     115 ..      73     144 ..      61     147 .. 0.81
   2 ?    0.2   0.0      0.26   7.9e+02      20      69 ..     207     258 ..     204     274 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
  CAMSAP_CKK  49 fliLfrdsklqyralYslseee..eelvklaGtG..PkkvtekmveklfkynsgakeFkei.stktlsvsid 115
                 + +L  d  ++ ++l +++ e+  e   k+  +G  P++v+ ++ +k+f  ++g+k+  +i  +  +s+si 
  CCD23270.1  73 YYLLQEDIYCKIKGLSEVKVEKikEAANKIIKVGfiPATVQLDIRQKVFALSTGSKQLDSIlGGGIMSMSIT 144
                 667888999******999966554666777654444*************************88899999986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.26
  CAMSAP_CKK  20 lshcvlaGkvneeqkkkvleelek..seskhfliLfrdsklqyralYslsee 69 
                 l+ +  a + n+e++ + +e+l +  s+++  l+++     ++r  Y+ + e
  CCD23270.1 207 LENVSYARALNSEHQMELVEQLGEalSSGEYRLVIMDSIMANFRVDYTGRGE 258
                 6777888899999999999999872244467788888888889988876644 PP

>> PAXNEB  PAXNEB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00012      0.35      18      35 ..     122     139 ..     110     146 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00012
      PAXNEB  18 ltStGtpsLDklLgGGLp 35 
                   StG+++LD++LgGG+ 
  CCD23270.1 122 ALSTGSKQLDSILGGGIM 139
                 57*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2492.20
//
Query:       CCD23271.1  [L=276]
Description: hypothetical protein NDAI_0B02360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2125.86
//
Query:       CCD23272.1  [L=722]
Description: hypothetical protein NDAI_0B02370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.8e-194  645.3   9.7   6.8e-194  645.3   9.7    1.3  1  EMP70     Endomembrane protein 70


Domain annotation for each model (and alignments):
>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  645.3   9.7  3.8e-198  6.8e-194       2     514 ..     123     676 ..     122     681 .. 0.95

  Alignments for each domain:
  == domain 1  score: 645.3 bits;  conditional E-value: 3.8e-198
       EMP70   2 ydYyd.llpfCkpeeekkkesesLgevLrGdrienspyelkfgkdeeckvlCtkkltkeelkklkelIkngYvvnwlvDnLPva.........tsfvsa 90 
                 ydYy   ++fC+pe + +k+ esLg++++Gdri+nsp+++++ +d++c +lC++++  +++k++++lIkng++ nwl+D+LP+a         t+f+  
  CCD23272.1 123 YDYYYdRFHFCQPE-HIEKQPESLGSIIFGDRIYNSPFQINMLQDKTCVSLCKTTIPGKDAKFINKLIKNGFFQNWLIDGLPAArqvydsrtkTEFYG- 219
                 887766*******7.467888***************************************************************77777777666776. PP

       EMP70  91 aGfplGfvdke...................................eekekyylnnhldfviryhkakeeekkrivgfevepksvkdeeeeeCpkea.e 153
                 +Gf+lGfvd                                     ++ e +y+ nh+d++++yh++ e +++r+vg+ v+p s+k+++  +C+++  +
  CCD23272.1 220 TGFELGFVDVVqgtttgdnantvakkpttnegleldtrdaknvqmlKNFELPYFANHFDIQVEYHDRGE-NNYRVVGVIVNPVSIKRSTPGTCETSGaP 317
                 6********889**************************9998876647789**************8755.667*************985479**88867 PP

       EMP70 154 leleeekkeeeteipftYsVkwresedvewasRwdlylesvedskihwfsiinslvivlllslivavillrtlrkdiaryneeeeee.aqeesgWKlvh 251
                 l l+e   ++++++ ftYsVk+  se + wa+Rwd+yl +++d+ i+wfs+in++v+vllls++v++ ll++l++d+aryne + ++ +qee gWKl h
  CCD23272.1 318 LMLSE---DQDNDVYFTYSVKFIPSE-TIWATRWDKYL-HIYDPAIQWFSLINFSVVVLLLSSVVIHSLLKALKSDFARYNELNLDDdFQEEAGWKLGH 411
                 99988...5899*************8.99*********.9******************************************988877*********** PP

       EMP70 252 gdVfrpPknsllLsvlvGsGvqlllmalvtlllallgflspsnrgslltvalllyvllgliaGYvsarlyktfggekwkkntlltalllpgllflvffl 350
                 gdVfr P++sllLsvlvGsGvql+lm+++++++a+lgflsps+rgsl+tv+++ly+l+g++++Y+s+ +yk+fgg +wk n+llt++l+pgl+f+ ++ 
  CCD23272.1 412 GDVFRIPHRSLLLSVLVGSGVQLFLMIICSIFFAALGFLSPSSRGSLATVMFILYALFGFVGSYTSMGVYKFFGGPYWKVNMLLTPILVPGLIFCGIVA 510
                 *************************************************************************************************** PP

       EMP70 351 lnlilwakessgalpfgtlvlllllwflisvPlvliGsllgfkkkai.ehpvrtnqiprqipkqpwylkpllsvllgGilpFgaifielyfilsslwle 448
                 ln++l++ +ssg +p  tl++++llwf+ s+Pl l+Gsl+++kk+++ ehp++tnqi+rqip qpwylk+++++l++Gi+pFg+i++elyfi+sslw++
  CCD23272.1 511 LNIFLLFVHSSGVIPAVTLFFMILLWFVFSIPLALAGSLIAHKKCNWdEHPTKTNQIARQIPFQPWYLKTWPATLIAGIFPFGSIAVELYFIYSSLWFN 609
                 *************************************************************************************************** PP

       EMP70 449 kiYylfgfLflvfllliittaevtilltYfqLcaedyrWwWrSflvgg.ssalYvflysiyYyftkl 514
                 ki+y+fgfL+++f+ll++tt++vtil+tY +Lc e++ W+Wr f++gg ++a+Yvf++si++  +kl
  CCD23272.1 610 KIFYMFGFLLFSFFLLTLTTSLVTILITYHSLCLENWMWQWRGFIIGGvGCAIYVFIHSILFTKFKL 676
                 **************************************************************65554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 4761.49
//
Query:       CCD23273.1  [L=1219]
Description: hypothetical protein NDAI_0B02380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-54  182.0   0.8    9.9e-54  182.0   0.8    6.5  7  Rax2      Cortical protein marker for cell polarity


Domain annotation for each model (and alignments):
>> Rax2  Cortical protein marker for cell polarity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.2     0.011     2e+02      45     119 ..      76     135 ..      17     162 .. 0.55
   2 ?   -4.2   0.1      0.53   9.5e+03      57      83 ..     379     406 ..     360     422 .. 0.64
   3 ?    0.4   0.9      0.02   3.6e+02      44      96 ..     593     649 ..     561     659 .. 0.60
   4 ?   -0.3   0.1     0.033   5.9e+02      44      81 ..     699     733 ..     660     745 .. 0.74
   5 ?   -2.1   3.2      0.12   2.2e+03      65     150 ..     747     829 ..     741     843 .. 0.82
   6 !    5.0   2.2   0.00079        14      48     124 ..     862     942 ..     850     970 .. 0.70
   7 !  182.0   0.8   5.5e-58   9.9e-54       1     215 []     977    1212 ..     977    1212 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.011
        Rax2  45 ngssfllkydgskWssiddinlgesttirglqvlsltnshsssdlldknqvLlvtGqlnlpdfGnasaalyngts 119
                 ++s+ l+ y++++  ++++   +++t i +++ +              ++ ++++G+ +l+++   + +lyn t+
  CCD23273.1  76 SNSNGLIYYSNNTLIQLEE--PSNDTYIAKITPF-------------GSDSFILSGTGSLSGYSLTNQLLYNLTT 135
                 3333333333333333332..2333333333333.............3556778888888888888888888776 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 0.53
        Rax2  57 kWss.iddinlgesttirglqvlsltns 83 
                 kW++ +++  + ++ +++++q++ l++ 
  CCD23273.1 379 KWTQeFQEFAFINQISVSSVQFVALDSY 406
                 4544133555666667777776666643 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.02
        Rax2  44 sngssfllkydgskWssiddinlgesttirglqvlslt...nshss.sdlldknqvL 96 
                 +++ + ll+y+ s++s+ ++ +++ + t ++l+ lsl+   ++ s   dl d+n +L
  CCD23273.1 593 IMNLNGLLQYQISNFSTSSSETTDVKITNTSLNQLSLEqfsKNTSMyADLYDDNTLL 649
                 345555777888888777765555554444555555554323333324444444444 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.033
        Rax2  44 sngssfllkydgskWssiddinlgesttirglqvlslt 81 
                 s+  ++l++y+g ++++i   n++++++i+++  l++ 
  CCD23273.1 699 SSKITYLVNYNG-TFNEIP--NFNKNSSITNVVNLTIH 733
                 456689999988.599998..79999999999877765 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 0.12
        Rax2  65 nlgesttirglqvlsltnshsssdlldknqvLlvtGqlnlpdfGnasaalyngtswiPYlltsssnnekgsissifleksnsfsss 150
                 n+++s+ti++ + l+l+  +s s+l   n   + +G + l d+  ++  +  g++++   +t++ +++++  + +fl++s s+  s
  CCD23273.1 747 NVSSSSTITNSSALQLSLWSSGSNL---NRDTVFSGAIALLDYTDLNGSIAIGNNFTVTNITNNVSSTNSLYTGLFLNDSLSIYAS 829
                 6788999999999999977777666...4445679**************999***9999999999999999999999988776544 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.00079
        Rax2  48 sfllkydgskWssiddinlgesttirglqvlslt..nshsssdlldknqvLlvtGqlnlpdfGnasaal..yngtswiPYl 124
                 +++l + +s++++ ++ ++ + tt++ +   +l+  ++ +   +++ n+ L+v G++ + +      +l  y++++w  ++
  CCD23273.1 862 QTMLAVASSDFNKNSELSILNLTTFETIANETLNvnSKINGLINFEHNSTLIVGGNFTILQSNCSGLCLynYDSNEWLTFA 942
                 556777788888888888888888888866555541444445569*************96655555555115566676655 PP

  == domain 7  score: 182.0 bits;  conditional E-value: 5.5e-58
        Rax2    1 latydlktqevsslsganelpgpvtsftladsdisqlwvagkssngssfllkydgskWssiddinlgesttirglqvlsltnshsssdlldknqvLl 97  
                  la +dl+t++vss++ +    + ++sf +++++i ++        +  +l +y++++Ws+i++ n+++sttir+++ + +  + +++d + + + ++
  CCD23273.1  977 LAIMDLSTYAVSSIKMG--DANILQSFATIGDKIITW--------NGIMLESYENGAWSTIQS-NFNSSTTIRSIEPIGFGPTLQKRDGTGSADGFI 1062
                  799**************..569***************........7788*************5.6******************************** PP

        Rax2   98 vtGqlnlpdfGnasaalyngtswiPYlltsssnnekgsissifle..ksnsfssssdlk...............................kkkkkls 161 
                  ++G+++ +++G+++a++yn+++w+PY+++ss+n  ++   +if++  +s  ++s+s+l+                                ++kk++
  CCD23273.1 1063 INGNIYDTEYGTIQAMIYNFKEWRPYYIISSTN--SQIAGQIFMNrdDSALYNSQSVLQnpnnatvttpsstssgtpsathssqphhqkqVGRKKID 1157
                  *******************************99..8889******999999*************************************9999***** PP

        Rax2  162 rgfVVlIgLAlALgtvallgllgiilayirkkreg.yepakpridenemldrVpP 215 
                  rgfVVlIgLAlALgtv+llg++g++layi+k+ +g ++ ++pr++e+eml++VpP
  CCD23273.1 1158 RGFVVLIGLALALGTVSLLGIIGLVLAYIFKDGDGsHDALNPRTNEDEMLETVPP 1212
                  ***********************************99999**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 8378.57
//
Query:       CCD23274.1  [L=623]
Description: hypothetical protein NDAI_0B02390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0085   16.4   0.6       0.05   13.9   0.6    2.3  1  PWI        PWI domain
  ------ inclusion threshold ------
      0.012   15.9   0.2      0.044   14.0   0.2    2.0  1  FOP_dimer  FOP N terminal dimerisation domain
        7.4    6.6  10.8        6.1    6.9   0.4    3.4  4  HAD_2      Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PWI  PWI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.6   8.4e-06      0.05       9      62 ..     566     617 ..     563     618 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.4e-06
         PWI   9 kkitellgfeDdvvieyvlnlLeeekeldpkklqinltgfLekeaekFvkeLWe 62 
                 + ++e+lg+ +d ++ey+++ ++e  + ++  l ++l++  ++++ + v+ +W+
  CCD23274.1 566 ELVKEYLGVYEDDLVEYIFENIKE--HKSKAMLVEDLKETFDEDSVAMVDVIWS 617
                 5699******************87..79999999*************9999996 PP

>> FOP_dimer  FOP N terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   7.4e-06     0.044      13      43 ..     556     586 ..     546     610 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.4e-06
   FOP_dimer  13 lsikeGrlvaeLirefLeffeldytlsvfsp 43 
                    ke r v eL++e+L ++e d    +f+ 
  CCD23274.1 556 AKLKESRAVDELVKEYLGVYEDDLVEYIFEN 586
                 5789*****************9999999974 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0021        12      43      96 ..     182     237 ..     149     239 .. 0.81
   2 ?   -2.9   0.1         1   6.1e+03      61      64 ..     296     299 ..     241     326 .. 0.54
   3 ?   -2.5   0.1      0.81   4.8e+03      60      69 ..     405     422 ..     364     450 .. 0.49
   4 ?    6.9   0.4     0.001       6.1      21      93 ..     526     602 ..     516     616 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0021
       HAD_2  43 lslrellrklgeseeeeekieellrkyneekkk..kevkpydgvkelLeeLkeagy 96 
                  s +++ ++l ++ + +++  ++++++  +++   + +k++d  kelL +Lke+ +
  CCD23274.1 182 ASQDDTEERLDVQLHYDSNTSKFIKDHAVKLESdaELLKLCDKFKELLSWLKEKSI 237
                 456677777888888888888887777666666689****************9986 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1
       HAD_2  61 kiee 64 
                  ++e
  CCD23274.1 296 RVKE 299
                 2222 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.81
       HAD_2  60 e........kieellrky 69 
                 e        ++++l++  
  CCD23274.1 405 EellqqksiNLKTLIHNS 422
                 222222222222222222 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.001
       HAD_2  21 nelleeygls.elseeelrkliglslrellrklgeseeeeekieellrkyneekkk...kevkpydgvkelLeeLke 93 
                 ++ le++ l+  ++ e++ ++   +l+e l kl+es  ++e+++e+l  y++ + +   +++k  +   +l+e+Lke
  CCD23274.1 526 QQSLESNRLEeGVPAEQVLTFTDDELDERLAKLKESRAVDELVKEYLGVYEDDLVEyifENIKEHKSKAMLVEDLKE 602
                 55666666665667777777777777777777777777777777777777776666444455555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2087  (0.116404); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4193.08
//
Query:       CCD23275.1  [L=146]
Description: hypothetical protein NDAI_0B02400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-20   73.4   1.5    5.9e-20   71.2   1.5    1.8  1  Mss4      Mss4 protein


Domain annotation for each model (and alignments):
>> Mss4  Mss4 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   1.5   3.3e-24   5.9e-20      11      92 ..      22     142 ..      13     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 3.3e-24
        Mss4  11 kivekeeel....pllekksekeeqkeselleefllvedvfdFdnvgvskevess.................................kyLiCAdCekG 72 
                 + ++ ++++    +lle   ++e++ +s++ ++fl+vedv+dFdn+gvs+++                                    +yLiCA+C+kG
  CCD23275.1  22 RTISLPNTVfekfQLLE---RREKSAQSQEKHDFLIVEDVWDFDNIGVSRNIRPEndddprieitdenldevvtfehngntwtiekctRYLICAECDKG 117
                 45555555543324444...456667777889********************88889****************************************** PP

        Mss4  73 PiGiidlse.....kksfylalerv 92 
                 PiGi+++ +     +k+ yl++ ++
  CCD23275.1 118 PIGIVCQVKndkgeEKVVYLLSLSS 142
                 ******4433345588899987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1090.32
//
Query:       CCD23276.1  [L=571]
Description: hypothetical protein NDAI_0B02410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-43  148.4   2.4    7.9e-43  146.3   0.3    2.2  2  DEAD        DEAD/DEAH box helicase
    3.7e-32  111.0   1.7    4.9e-28   97.7   0.0    2.7  2  Helicase_C  Helicase conserved C-terminal domain
    5.7e-06   26.4   4.1    2.2e-05   24.5   0.1    2.3  2  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.3   0.3   1.3e-46   7.9e-43       1     176 []     159     335 ..     159     335 .. 0.93
   2 ?    1.9   0.1     0.028   1.7e+02      46     111 ..     490     558 ..     465     570 .. 0.67

  Alignments for each domain:
  == domain 1  score: 146.3 bits;  conditional E-value: 1.3e-46
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST......SEEEEEETTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid......lrvlliiggvaardqlsk 93 
                 t+iQ e+ipl+l+ +d++++a+TGsGKTlaflip+lq+++++k++ g k li++Pt+eLa+q++ ++ k+ ++i       l++ l+ ++ +a+ + ++
  CCD23276.1 159 TPIQCESIPLALNSRDIVACAPTGSGKTLAFLIPLLQQIINDKETLGLKGLIISPTKELANQIFIECIKLSNKIFldkkrpLQIALLSKSLSAKLKNKV 257
                 89*********************************************************************9854558889999999999999999999 PP

                 HH.TTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  94 ld.ngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 ++ +++di+++tp rl+d+++++ l+ls+v+ l++DEad+l d+ f ++ + il+++    +d   + +  ++SAT+p++v+++
  CCD23276.1 258 INeKKYDIIISTPLRLIDVVKNEALDLSKVKHLIFDEADKLFDKTFVEQTDDILSSC----TDN--SLRKAMFSATIPSNVEEI 335
                 96355****************************************************....233..3459**********9975 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.028
                 TS-EEEEEESSHHHHHHHHHHHHHHTTTST...SEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  46 tgpkalivePtreLaeqtlnnlkkfkkyid...lrvlliiggvaardqlskldngvdivvgtpgrlddl 111
                 t+   l + P    ++q   ++ +++++i+    +++  i+  + + ++++++  ++i +   +r +++
  CCD23276.1 490 TKQDSLAIKPIINVMKQSGCEVAEWMNNISkitKKEKEAIKRGKSHTERKQISTVPKIDILKKKRKQEM 558
                 556678899999999999999999999755555666655554444444444433355555555555554 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.4   4.2e-05      0.25      18      92 ..     207     294 ..     188     308 .. 0.74
   2 !   97.7   0.0   8.2e-32   4.9e-28       3     111 .]     372     480 ..     370     480 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.2e-05
                 EEEEEESSHHHHHH.........HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGG......GTSSSTSTTESEEEESS CS
  Helicase_C  18 kilifvntidrlek.........vklllekk.gikvavlhgelpqnereeileqfnkgesdvLiatdv......aerGidipkvnlVinfd 92 
                 k li+++t++ +++          k++l kk  +++a l  +l+++ +++++++    ++d++i+t          + +d+ kv+++i+ +
  CCD23276.1 207 KGLIISPTKELANQifieciklsNKIFLDKKrPLQIALLSKSLSAKLKNKVINEK---KYDIIISTPLrlidvvKNEALDLSKVKHLIFDE 294
                 556666666633323323323444777766668*******************987...89******9888887788999999999999755 PP

  == domain 2  score: 97.7 bits;  conditional E-value: 8.2e-32
                 HHHHHHHHHHTTTTSEEEEEESSHHHHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   3 leallellkleeeggkilifvntidrlek..vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 l a+ +l+++ e +  i+if+++i+r++    +l+     ++v v+h+e ++ +re+i+e+f++g+  +Li+tdv++rGid+++vnlVin+d+pr+ + 
  CCD23276.1 372 LIAIRQLVQEGEFKPPIIIFLESITRAKAlyHELM--YDRMNVDVIHAERTALQREKIIERFKSGDLWCLICTDVLARGIDFKGVNLVINYDVPRTAQA 468
                 5567777788899999***********74544444..559*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y++riGRtgR+g
  CCD23276.1 469 YVHRIGRTGRGG 480
                 **********86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.1   3.6e-09   2.2e-05      23     169 ..     171     328 ..     140     330 .. 0.75
   2 ?    2.3   1.1     0.026   1.5e+02      73     130 ..     510     563 ..     482     569 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 3.6e-09
                 TTSEEEEEESTTSTHHHHH.HHHHHHH-S........-EEEEESSHHHHHHHHHHGGGGTGG.............GEEEESSS-B--.......-SEEE CS
      ResIII  23 rdkrglikmaTGtGKTlva.aklierllkkgkee...kflflvprkslleqtleefkkflseayke.........igkkvsgdkkkakekdstnkkilv 108
                 + + ++  ++TG+GKTl   + l +++ + ++     k l++ p+k+l +q   e  k++++ + +          +k++s + k++  +++++ +i++
  CCD23276.1 171 NSRDIVACAPTGSGKTLAFlIPLLQQIINDKE-TlglKGLIISPTKELANQIFIECIKLSNKIFLDkkrplqialLSKSLSAKLKNK-VINEKKYDIII 267
                 456677889********997888999988644.469*****************8887777776666666788887777777777777.8999******* PP

                 EEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT---.....SEEEEEESS- CS
      ResIII 109 ttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekfke.....avllglTATp 169
                 +t  +l         ++e l+ ++ + +i+DEa +l +k+++++  + +++       +  ++AT+
  CCD23276.1 268 STPLRLIDVV-----KNEALDLSKVKHLIFDEADKLFDKTFVEQTDDILSSctdnsLRKAMFSATI 328
                 *****99999.....77888888889*********9997655554444333222335555666665 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.026
                 HGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH........HHHT CS
      ResIII  73 efkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseeeeeeseellr 130
                 e+++++++    i+k+++++k+ +k+++s++ +  ++t+ ++d  ++++++e  ++++
  CCD23276.1 510 EVAEWMNN----ISKITKKEKEAIKRGKSHTERKQISTVPKIDILKKKRKQEMIQASK 563
                 33333333....66777777777789999999*9*****9999999777666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4098.16
//
Query:       CCD23277.1  [L=900]
Description: hypothetical protein NDAI_0B02420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-68  225.4   0.4    3.2e-24   84.7   0.1    3.6  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   2.5e-27   4.4e-23       8      94 ..     498     581 ..     494     584 .. 0.95
   2 !   55.9   0.0   1.6e-19   2.9e-15       3      95 ..     589     673 ..     587     675 .. 0.90
   3 !   84.7   0.1   1.8e-28   3.2e-24       2      95 ..     684     776 ..     683     778 .. 0.94

  Alignments for each domain:
  == domain 1  score: 81.0 bits;  conditional E-value: 2.5e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++  G++ag++++++++P+d++Ktr+q+q++ +k+++    +d+l ki+ ++G+r+ly+Gl+p+l++vap++a+k+++++ +++ l 
  CCD23277.1 498 NFSLGSIAGCIGATIVYPIDFIKTRMQAQRSLTKYKN---SVDCLIKIVSKNGIRSLYSGLTPQLIGVAPEKAIKLTINDLMRNKLS 581
                 6889****************************99987...8*****************************************99886 PP

  == domain 2  score: 55.9 bits;  conditional E-value: 1.6e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 l++  e+l+G++ag+++t+vt+Pl+++K+rlq+++++s+ +    ++    ki+k+  + gly+G+++ llr +p sa++f +y  lk+ l+k
  CCD23277.1 589 LKLSYEILSGATAGLCQTIVTNPLEIIKIRLQVKSSNSEIN----AW----KIIKHLKFNGLYKGITACLLRDVPFSAIYFPTYAHLKKDLFK 673
                 5677899****************************998864....34....8999999*****************************987665 PP

  == domain 3  score: 84.7 bits;  conditional E-value: 1.8e-28
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   2 elsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +l++++ l aG++ag+ a+++ttP+dv+Ktrlq+++k ++ + +++i++++k+i++ee ++++++G ++++lr++p+ + ++++ye +k+l++ 
  CCD23277.1 684 RLKTWELLTAGAIAGMPAAFLTTPFDVIKTRLQIEPKPGEVA-YKGIFHAFKTIFEEESFKSFFKGGGARVLRSSPQFGFTLAAYEIFKNLFQG 776
                 578999********************************9985.566*********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (900 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1171  (0.0653132); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 6153.63
//
Query:       CCD23278.1  [L=554]
Description: hypothetical protein NDAI_0B02430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-18   67.4   9.0    2.3e-18   66.5   0.3    3.2  2  Pkinase         Protein kinase domain
    3.2e-09   36.5   0.1    7.6e-09   35.2   0.0    1.7  2  Pkinase_Tyr     Protein tyrosine kinase
    9.5e-07   27.9   0.0    9.5e-07   27.9   0.0    2.3  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.3   3.9e-22   2.3e-18       3     240 ..      15     293 ..      13     304 .. 0.75
   2 ?    1.4   2.3     0.029   1.7e+02     195     259 ..     462     533 ..     456     536 .. 0.55

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 3.9e-22
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.................HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTE CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.................kkvlrEikilkklk.hpnivrlyevfeekdelylvleyvegg 83 
                 +  k+GeGsfG+++++ +  + +++  K  +++ ++  ++                  +++ E +  k l+  + i ++y++ +e  + +l+ +++   
  CCD23278.1  15 VGPKIGEGSFGVIFEGENILN-NKFKQKNDNNDATTTGSNsnsdpvaikfeprhsdaPQLRDEFRSYKILNkVKGIPHVYYFGQEGMHNILIIDLLGP- 111
                 556777777777776665333.33444444444333333344455555666666665678899999999998999999****************9984. PP

                 BHHHHHH.HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET...............TTE....EEE-SGTTSEESSSSCS........B CS
     Pkinase  84 eladlle.rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLide...............kge....lKitDFGlakelesssk........l 154
                 +l+dl e  ++++s +++  +akq+++ ++ +H++ +i+rD+Kp+N+Li++               +      + ++DFG+ak+++  ++         
  CCD23278.1 112 SLEDLFEwCNRKFSIKTTCMLAKQMIQRIKDIHNHDLIYRDIKPDNFLISQyqkknssqkgitrsaN-GdpnlIYLVDFGMAKQYRDPKTkqhipyreR 209
                 5777777766799*************************************76677666666665552.05788*************999999*****99 PP

                 CTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHH CS
     Pkinase 155 tsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdl 240
                 +s  gt +Y++     ++e s+  D+ slG +++ +l  + p++g k  + ++ +++++  + + l++ +  l + ++i++++  +
  CCD23278.1 210 KSLSGTARYMSINTHFGKEQSRRDDLESLGHVFFYFLRSSLPWQGLKAPN-NKLKYEKIGLTKQKLNP-NDLLVNYNNIPRQFATF 293
                 ***********999999***************************666554.45555554444444444.33344445555555555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.029
                 -STTTSSHHHHHHHHHHTHHHHHHHCT.........SHH...HHHTTS.....-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 195 ppfsgekgkekvekeldqlekilkilg.........etkeklpeasei.....seeakdllkkllkkdpkkRltaeell 259
                 p+++++++++  ++ +d + + +k  +         +++++            +++  +l ++ ++ ++++R t++ + 
  CCD23278.1 462 PILQSRNNNN--NNSYDSMSTRIKNNNnyyndtrrqQQQQQQ-----AqqnlfDNTSASLQNNTCNNNENNRSTISRIF 533
                 5555433333..333333222222222232233332333333.....14445599999****************99876 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.3e-12   7.6e-09       4     211 ..      16     257 ..      13     313 .. 0.82
   2 ?   -3.2   0.3      0.66   3.9e+03     219     255 ..     496     532 ..     477     535 .. 0.54

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.3e-12
                  EEEEEEESSEEEEEEEEET................TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--T CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkg................ekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvk 84 
                  g k+GeG+fG ++eg+                    +++++  Va+K   +++++ + ++ ++ +ki++k+     i +++ +  ++ + +++++++ 
   CCD23278.1  16 GPKIGEGSFGVIFEGENILnnkfkqkndnndatttGSNSNSDPVAIKFEPRHSDAPQLRDEFRSYKILNKVkG---IPHVYYFGQEGMHNILIIDLL- 109
                  679************8765568999999999988767778899*********999999999999999999844...444455556667788888887. PP

                  TEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..................TTEEEE-STTTHEETTTSSEE..... CS
  Pkinase_Tyr  85 gGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse..................nkvvkisDfGLardiekddey..... 159
                  g +L++  +   ++k+++k+++ +a q+ + ++ +++++l+ rd+   N L+s+                   +++ + DfG+a++  + ++      
   CCD23278.1 110 GPSLEDLFEWC-NRKFSIKTTCMLAKQMIQRIKDIHNHDLIYRDIKPDNFLISQyqkknssqkgitrsangdPNLIYLVDFGMAKQYRDPKTKqhipy 206
                  45899999998.99********************************************************9999***********9943332223454 PP

                  EETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHH CS
  Pkinase_Tyr 160 vkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkn 211
                  +++++     ++m++ + + k+ + + D  s G + +  +  ++ p++glk+
   CCD23278.1 207 RERKSLSGTARYMSINTHFGKEQSRRDDLESLGHVFFYFLR-SSLPWQGLKA 257
                  889999999*****************999999998887665.7788887744 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.66
                  HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 219 kegkrlekpekcpeelyelmkkcweedpeeRptfsel 255
                  +++++ ++ +   ++ ++l ++  +++ ++R t+s++
   CCD23278.1 496 QQQQQQAQQNLFDNTSASLQNNTCNNNENNRSTISRI 532
                  2223333333344455556666677777777777766 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   1.6e-10   9.5e-07     315     406 ..     136     244 ..      35     246 .. 0.85
   2 ?   -2.6   6.8      0.29   1.7e+03     215     274 ..     421     487 ..     377     538 .. 0.52

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 1.6e-10
  Pkinase_fungal 315 aIkghrsLflkagiLHrDiSenNilitdskke.............gerkglLiDLDlakelsddsses.....garertGTleFmaievlkgeeH 391
                      I+  +  + +  ++ rDi  +N li + +k+             + +   L+D+ +ak++ d+++++     +++   GT+ +m+i+   g+e 
      CCD23278.1 136 MIQRIKDIH-NHDLIYRDIKPDNFLISQYQKKnssqkgitrsangDPNLIYLVDFGMAKQYRDPKTKQhipyrERKSLSGTARYMSINTHFGKEQ 229
                     566677788.8999*************764444788888888875556678***********9988886666555999***************** PP

  Pkinase_fungal 392 syrhDLESffyvllw 406
                     s r+DLES+  v+++
      CCD23278.1 230 SRRDDLESLGHVFFY 244
                     ********9888887 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.29
  Pkinase_fungal 215 dddiaeiRkgldvtkaekfrskrkvvsssssqe.....................lsskaevklkksesskkvekrsvdssv 274
                     + ++++ R+ l  +k++  +sk+++++ss + e                     +              +++++r+ ++++
      CCD23278.1 421 QTTTNNNRSALLRSKDY-SNSKDNLLKSSNQMEknkyqslkqpilqsrnnnnnnS-------------YDSMSTRIKNNNN 487
                     33336666666666663.3444555555555554555444433322222222220.............1222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2435  (0.135813); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 3730.64
//
Query:       CCD23279.1  [L=546]
Description: hypothetical protein NDAI_0B02440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   12.8   0.6         63    4.7   0.0    4.2  5  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.28     5e+03      13      38 .]      91     117 ..      78     117 .. 0.71
   2 ?    4.7   0.0    0.0035        63      15      36 ..     152     173 ..     133     175 .. 0.74
   3 ?   -2.8   0.0       0.8   1.4e+04      22      31 ..     272     282 ..     259     285 .. 0.53
   4 ?    2.5   0.0     0.017     3e+02      28      38 .]     335     344 ..     300     344 .. 0.70
   5 ?   -1.6   0.0      0.34     6e+03       9      26 ..     360     380 ..     354     384 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.28
                 E.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 v.tslafspdgawlasGsdDgtvriWd 38 
                 + +sl+ +++   l+ G+ + ++++++
  CCD23279.1  91 IpNSLSINDSTIILSNGDSKDNLKLYN 117
                 678888888888888885588888876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0035
                 EEEEETTSSEEEEEETTSEEEE CS
        WD40  15 slafspdgawlasGsdDgtvri 36 
                 sl  + +++++++G+ Dg v +
  CCD23279.1 152 SLPHNNESPFILTGHQDGQVNL 173
                 455888999*********9975 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.8
                 SSEE.E.EEETT CS
        WD40  22 gawl.a.sGsdD 31 
                 ++ + a +Gs D
  CCD23279.1 272 HDDVlAlCGS-D 282
                 3332123677.4 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.017
                 EETTSEEEEEE CS
        WD40  28 GsdDgtvriWd 38 
                 ++ +g +++Wd
  CCD23279.1 335 SH-NGIIKVWD 344
                 46.9******9 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 0.34
                 SS.SS..EEEEEEETTSSEEE CS
        WD40   9 GH.ss..vtslafspdgawla 26 
                  H +   +ts+++++  + l 
  CCD23279.1 360 SHfKTgiITSIKYDSIEKKLY 380
                 686445679997766555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 4070.98
//
Query:       CCD23280.1  [L=624]
Description: hypothetical protein NDAI_0B02450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-26   91.3  24.0    1.8e-14   53.6   0.8    5.6  6  Iron_permease  Low affinity iron permease
     0.0095   15.7   5.2     0.0095   15.7   5.2    3.2  4  Tetraspanin    Tetraspanin family
  ------ inclusion threshold ------
       0.14   12.0   1.3       0.27   11.1   1.3    1.4  1  MCM_OB         MCM OB domain
        1.1    9.2   9.9      0.096   12.6   2.9    2.6  2  PsbJ           PsbJ


Domain annotation for each model (and alignments):
>> Iron_permease  Low affinity iron permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.83   3.7e+03      74     119 ..      32      77 ..      29      83 .. 0.69
   2 !   15.1   0.5   3.2e-06     0.015       4      56 ..     108     160 ..     105     235 .. 0.84
   3 !    4.1   0.1    0.0086        38       2      33 ..     286     317 ..     285     320 .. 0.93
   4 !    9.2   0.1   0.00022      0.98      35      69 ..     340     374 ..     333     388 .. 0.78
   5 !   24.0   0.3   5.9e-09   2.7e-05       6      61 ..     423     478 ..     419     483 .. 0.91
   6 !   53.6   0.8   4.1e-18   1.8e-14       3      82 ..     529     608 ..     527     615 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.83
  Iron_permease  74 kLdeLirasksaknrlidleelteeeleelakeyerlaeaakeeee 119
                    +Ld +  +++  ++++i + + + e+ e+l++ +++++++++++++
     CCD23280.1  32 DLDHVCTVEEGEEEEVITIIDENGEKKETLKQDLRAISSNSDQSTA 77 
                    5677777777777777777777777777777777777776666655 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.2e-06
  Iron_permease   4 vakavarvagseiafvlallvivvwavsgplfkysdtwQLviNtgttiitFlm 56 
                    v + + ++ag +i f+   ++ ++w+v g +++ s  wQ v+  g +i  ++ 
     CCD23280.1 108 VLDILVDFAGGQIVFCCVWIILIIWIVIGIVYNGSYVWQVVMQDGQSIQCYIW 160
                    5566678899*********************************9999976654 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0086
  Iron_permease   2 ervakavarvagseiafvlallvivvwavsgp 33 
                    +r+++  +++ gs   ++l  l i+vw+++g 
     CCD23280.1 286 DRFSSISSNIIGSVPCMILFWLGIIVWIICGV 317
                    69***************************996 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00022
  Iron_permease  35 fkysdtwQLviNtgttiitFlmvfliqnsqnrdsk 69 
                     k+sd+wQ+ iNt+ ++   +    +qn   r +k
     CCD23280.1 340 KKFSDAWQMYINTAVAVSLLICTTFLQNIRARHDK 374
                    58***********9887666666667777666665 PP

  == domain 5  score: 24.0 bits;  conditional E-value: 5.9e-09
  Iron_permease   6 kavarvagseiafvlallvivvwavsgplfkysdtwQLviNtgttiitFlmvfliq 61 
                    ++ a++ g+ i ++la+++  vw+  g+ +++ d+w L+i t t ++ Fl  ++i 
     CCD23280.1 423 DWYADIIGTGIGVMLAIAFFGVWIGIGSPLHWDDNWWLIIGTYTGLVGFLDGYVIR 478
                    6789999******************************************9777665 PP

  == domain 6  score: 53.6 bits;  conditional E-value: 4.1e-18
  Iron_permease   3 rvakavarvagseiafvlallvivvwavsgplfkysdtwQLviNtgttii.tFlmvfliqnsqnrdskaiqlkLdeLiras 82 
                    ++++ v+r+++ ++ +++++l+i++++  ++ + +s t+QL+ Nt+t ii  F++++l+q ++ +d++  ++++  L++  
     CCD23280.1 529 KISSFVNRICSDQLSVLASILIIIGLICVSSGLRWSTTGQLIANTPTMIIeEFFLIVLLQAHNWADQQR-RVEVSALLARR 608
                    7899**********************************************99***************99.99998887765 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   5.2   2.1e-06    0.0095      76     193 ..     122     249 ..     109     259 .. 0.77
   2 ?   -0.7   0.1      0.22   9.8e+02      10      25 ..     303     318 ..     290     375 .. 0.54
   3 ?   -2.4   0.9      0.72   3.2e+03      53      68 ..     428     444 ..     418     449 .. 0.76
   4 ?   -1.0   0.6      0.26   1.2e+03       5      26 ..     542     564 ..     539     587 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.1e-06
                  XXXXXXXXXXXXXXXXXXXXXXXXXX--HHH........HHHHHHHHHHHHHHHHHHTHHHHHHHHHHT---SSH....H..HH........GSSTT- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxx........xxxxxx RF
  Tetraspanin  76 kcllltfsllllvlfllelaagilgfvfsdkargkvseiinnaievkyrddldlkkcqnlldslqkklsCCGvns....ykDws........dnpsre 161
                   c+ ++ +++ +v+ ++  +  ++ +v++d       ++i+ +i   +++ l     q+l ++ ++ l CC   s    +kD+          ++  +
   CCD23280.1 122 FCCVWIILIIWIVIGIVYNGSYVWQVVMQDG------QSIQCYI---WDTLLMR---QQLTSTHEQVLVCCQLRSrmstFKDFLtrtlnvhnHDKDDT 207
                  4788888888888888888888888888888......5677777...4444444...99*************888777788888*******999999* PP

                  SSSCGCC.............................S--HHHH CS
                  xxxxxxxxxxxxxxxx........xxxxxxxxx...xxxxxxx RF
  Tetraspanin 162 ncsvPesCclptpnqa........yleasksiy...tegCidk 193
                  n+ +P sC  ++++++        + +++++ +   +e C +k
   CCD23280.1 208 NNNIPLSCSASSITSNncnesndkTTQDKSK-InedNEYCQEK 249
                  **********999998777777643333333.23677777776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.22
                  XXXXXXXXXXXXXXXX CS
                  xxxxxxxxxxxxxxxx RF
  Tetraspanin  10 llfwligivllavGvw 25 
                  +lfwl  iv +++Gv 
   CCD23280.1 303 ILFWLGIIVWIICGVI 318
                  2344444444444433 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.72
                  XXXXXX.XXXXXXXXXX CS
                  xxxxxx.xxxxxxxxxx RF
  Tetraspanin  53 livvGv.llfllgflGc 68 
                  +i +G+ ++++++f+G+
   CCD23280.1 428 IIGTGIgVMLAIAFFGV 444
                  57777789999999995 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.26
                  XXXXXXXXXXXXXXXXXXX.XXX CS
                  xxxxxxxxxxxxxxxxxxx.xxx RF
  Tetraspanin   5 lfffnllfwligivllavG.vwl 26 
                  l +++ ++++ig+++++ G  w 
   CCD23280.1 542 LSVLASILIIIGLICVSSGlRWS 564
                  56778889999999999993333 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.3   5.9e-05      0.27      50     114 ..     191     278 ..     155     279 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.9e-05
                 -....................-SB-.......TTT-HHH-EEE-GGGSEEEEEEEEEEE-------------EEEEEEEGGGTT---TT- CS
      MCM_OB  50 e....................PrkCe.....ekeCeskdpfkletekskfvdfqklklQEspeevpaGelPrslevileddlvdkvkPGd 114
                 +                    P +C+     +++C+ +++ k +++ksk+ +  +   QE+  e p+ +lP+s + i++ ++  k  +G+
  CCD23280.1 191 DfltrtlnvhnhdkddtnnniPLSCSassitSNNCN-ESNDKTTQDKSKINEDNE-YCQEKNAETPENSLPESSDAIINPEMDMKTIAGE 278
                 133333444445556666677****999999999**.899999999**9887776.58*******************9999988887775 PP

>> PsbJ  PsbJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.7      0.22   9.9e+02      22      33 ..     133     144 ..     126     145 .. 0.82
   2 ?   12.6   2.9   2.2e-05     0.096      14      39 .]     427     452 ..     424     452 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.22
                 HHHHHHHHHTTS CS
        PsbJ  22 tvvglFfYGsYa 33 
                  v+g+ + GsY+
  CCD23280.1 133 IVIGIVYNGSYV 144
                 5899******97 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHHHHHHHTTSSTTS-- CS
        PsbJ  14 tvaGlgvitvvglFfYGsYaGlGSSL 39 
                  ++G+g+ +++++ f+G + G+GS L
  CCD23280.1 427 DIIGTGIGVMLAIAFFGVWIGIGSPL 452
                 689*********************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1362  (0.0759663); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.41
# Mc/sec: 4615.44
//
Query:       CCD23281.1  [L=836]
Description: hypothetical protein NDAI_0B02460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-94  316.1   0.0    3.5e-94  315.7   0.0    1.2  1  HECT      HECT-domain (ubiquitin-transferase)
    4.5e-34  116.2  22.8    4.3e-12   45.9   1.3    4.1  4  WW        WW domain
    2.9e-20   72.5   0.1    1.3e-19   70.3   0.1    2.2  2  C2        C2 domain


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.7   0.0   5.9e-98   3.5e-94       2     305 ..     533     834 ..     532     836 .] 0.97

  Alignments for each domain:
  == domain 1  score: 315.7 bits;  conditional E-value: 5.9e-98
                 HHHHHHT-GGGSSEEESSTTSSSEEE-TTHHHHS.....HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT-.---TCHHHHH-HHHHHHHHHHH..HS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   2 llskelldpklglfeeesedsgtlypkpssseee.llklfeflGkvlGkaiyeeilldlpfsraflkfllgeekitledleeidpelakslkellsles 99 
                 lls+e+++p + lfe++++d++t++++p+s  +  +l++f+f+G+v+G+ +++++ ld  f  a++k++l+ +k+ l+d+e +d ++++sl+++l  e+
  CCD23281.1 533 LLSHEMFNPFYCLFEYSAHDNYTIQINPNSGINPeHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLR-KKVILQDMEGVDADVYNSLNWML--EN 628
                 89***************************9877797899********************************.6**********************..67 PP

                 -GGG...GT-BSEEEEE.TTEEEEEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS.--HH CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 100 nteevedlaLtFtipen.agasatieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfsevipskalklfdaeelellisGedelidve 197
                 + + v  l+LtF+ + + +g+  t++L++nG+ni+Vt+enkkeY++l++++++ ++v++q++af++Gf+e+ip++++++fd++elelli G +e idve
  CCD23281.1 629 SIDGV--LDLTFSADDErFGEVVTVDLKENGRNIEVTDENKKEYVELFAQWKIVDRVQEQFRAFMDGFNELIPEDLVTVFDERELELLIGGIAE-IDVE 724
                 77656..9*****99999***************************************************************************9.**** PP

                 HHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-.....B--EEEEE-S..-TTS--EEEGGGTEEEE---SSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 198 dlrrnteykggynaesetiewlweilkefspeekrlfLqFvTgssrlPlgGfael.....hpkftierkskedetrLPtahTCfnlLklpdYsskeilk 291
                 d++++t y+g y++++++i+w+w+ ++++++e+++++LqF+Tg+sr+P++Gf+ l      ++ftie+ +  + ++LP++hTCfn+ +lp+Y++ + +k
  CCD23281.1 725 DWKKHTDYRG-YQESDDVIKWFWKCISSWDNEQRARLLQFTTGTSRIPVNGFKDLqgsdgPRRFTIEKAG--EVQQLPKSHTCFNRVDLPPYDDFDNMK 820
                 ********75.***********************************************999*******88..*************************** PP

                 HHHHHHHHHHH--X CS
                 xxxxxxxxxxxxxx RF
        HECT 292 ekLltAieetegFe 305
                 +kL++A+eet gF+
  CCD23281.1 821 QKLTLAVEETIGFG 834
                 *************8 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   4.2   1.1e-14   6.7e-11       1      31 []     249     278 ..     249     278 .. 0.95
   2 !   45.9   1.3   7.2e-16   4.3e-12       1      31 []     360     389 ..     360     389 .. 0.99
   3 !   40.5   0.3   3.6e-14   2.2e-10       1      31 []     416     445 ..     416     445 .. 0.99
   4 ?   -2.7   0.1       1.1   6.5e+03       3      10 ..     724     731 ..     724     734 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 1.1e-14
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LPpGWe ++d   Gr+YY++h+T++t+W +P
  CCD23281.1 249 LPPGWERRTDNF-GRTYYVDHNTRTTTWKRP 278
                 8****9998888.*****************9 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 7.2e-16
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP+GWe++++p+ Gr Y+++h+T++t+W++P
  CCD23281.1 360 LPSGWEQRFTPE-GRAYFVDHNTRTTTWVDP 389
                 8***********.****************99 PP

  == domain 3  score: 40.5 bits;  conditional E-value: 3.6e-14
                 X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW   1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31 
                 LP+GWe++ + +  rvY+++h+T++t+W++P
  CCD23281.1 416 LPSGWEMRLTNT-ARVYFVDHNTKTTTWDDP 445
                 8***********.*****************9 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.1
                 TTEEEEE- CS
          WW   3 pGWeeqwd 10 
                 ++W++++d
  CCD23281.1 724 EDWKKHTD 731
                 58****98 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.1   2.3e-23   1.3e-19       2      92 ..       4      95 ..       3     108 .. 0.88
   2 ?   -2.3   0.0      0.93   5.5e+03      18      34 ..     316     333 ..     297     343 .. 0.61

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 2.3e-23
                EEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEE..EEEEEEEEGHHHH CS
          C2  2 klevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskdd..fiGkveiplstll 92
                +++v+ + A+ L ++d+++s+dp++++++dg q++ T+  k++lnP Wne+f+f+  + e++ L+++Vfd+++++k+d  f+G+v+i+l ++l
  CCD23281.1  4 TISVKLVAAESLYKRDVFRSPDPFAVLTIDGYQTKSTSAAKKTLNPYWNETFKFNDIN-ENSILTIQVFDQKKFKKKDqgFLGVVNIRLGDVL 95
                57899*********************************99**************5555.6*************966656**********9933 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.93
                 T..TSSCEEEEEEEEECEE CS
          C2  18 k..kgssdpyvkvsldgkq 34 
                 +  ++ss++ v+v++ g++
  CCD23281.1 316 GseTNSSNSSVTVQV-GNS 333
                 133667999999999.443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1068  (0.0595683); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 5780.64
//
Query:       CCD23282.1  [L=261]
Description: hypothetical protein NDAI_0B02470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-46  155.7   0.1    1.2e-45  155.0   0.0    1.3  1  Ribosomal_S8e  Ribosomal protein S8e
  ------ inclusion threshold ------
        0.1   12.5   0.2       0.28   11.1   0.2    1.7  1  DUF3746        Protein of unknown function (DUF3746)


Domain annotation for each model (and alignments):
>> Ribosomal_S8e  Ribosomal protein S8e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.0   0.0   1.4e-49   1.2e-45       3     137 .]      32     260 ..      30     260 .. 0.97

  Alignments for each domain:
  == domain 1  score: 155.0 bits;  conditional E-value: 1.4e-49
                    XBXXCCCSEESSTEEXXXSSXXX...................................................CCSBXXXXXXXEE......... CS
  Ribosomal_S8e   3 isrdskhkrkltGgkakllrkkr...................................................kielgrkekatkl......... 38 
                    +++ s ++++ltG k k+++kkr                                                   +i+++r eka k+         
     CCD23282.1  32 VHKVSTKAQTLTGWKGKQFAKKRyaekvamrkkikaheqskiktgskpldengealptylldreqtntakaissSIKQKRLEKADKFsvplpkvrg 127
                    7899***********************************************************************************999999997 PP

                    ..SSHEEEEEEETTCEEEE..............................EEESESEEEEEETTTTEEEEEEEEEEECSSSTCHHHHTTC--TTEEE CS
  Ribosomal_S8e  39 ..gaervkvvrvrgGkrkk..............................ralrlkkanvthpeekvtkklkIlgVkknpsnneyvrlgvltKgaii 102
                      ++e++kvv  ++Gk+k+                               alr kkanvthpe++vt+ l+Il+Vkknp++++y++lgvltKg+ii
     CCD23282.1 128 isEEEMFKVV--KTGKSKTkswkrmitkhtfvgegftrrpvkmeriirpSALRQKKANVTHPELGVTVFLPILSVKKNPQSPMYTQLGVLTKGTII 221
                    655*******..888888888*************************************************************************** PP

                    EEESHHHHHHHHTTEEE....EEEESEHHHHSSEEEEEE CS
  Ribosomal_S8e 103 evdvseLgevtqsgkvv....AqvtsrPgqdGcvnavlL 137
                    ev+vseLg+vt++gkvv    Aq+t++P++dGcvnavlL
     CCD23282.1 222 EVNVSELGMVTAGGKVVwgkyAQITNEPDRDGCVNAVLL 260
                    **************************************8 PP

>> DUF3746  Protein of unknown function (DUF3746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   3.2e-05      0.28       9      31 ..     141     163 ..     139     166 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.2e-05
     DUF3746   9 kvttsskKktCkKhifdNstyTT 31 
                 k+ t+s K++  Kh+f++  +T 
  CCD23282.1 141 KSKTKSWKRMITKHTFVGEGFTR 163
                 678999**************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1273  (0.0710023); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1876.45
//
Query:       CCD23283.1  [L=380]
Description: hypothetical protein NDAI_0B02480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-12   46.2   2.5    5.1e-12   46.2   2.5    2.2  2  Sas10_Utp3      Sas10/Utp3/C1D family
  ------ inclusion threshold ------
       0.16   10.3   1.3       0.26    9.6   1.3    1.2  1  Phlebovirus_G1  Phlebovirus glycoprotein G1


Domain annotation for each model (and alignments):
>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   2.5   5.7e-16   5.1e-12       1      87 []       8     114 ..       8     114 .. 0.80
   2 ?   -2.1   0.2      0.67     6e+03      22      22 ..     156     156 ..     123     181 .. 0.53

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 5.7e-16
  Sas10_Utp3   1 leslsksldelqeslepllsk.....akaee......kkslsd.......eklsegisllslKnelllaYllnlllylllklsg..velkdhp...... 73 
                 l+++++sl++++es+e l+++     +   e      ++++ d        +++e++sllslKn+++l+Y+++lll++  kl+      ++ +      
  CCD23283.1   8 LKEMNASLETVSESIEILHNNylqdhE---EteqeggNNTD-DtlhsylkLNKNEKVSLLSLKNDSMLSYINSLLLIVGNKLKTrkG--NNDDdvafyd 100
                 799*****************9986542...12345643233.36999***99*************************7799998431..2222467777 PP

  Sas10_Utp3  74 vvkeLvrlRvyleK 87 
                   +++++ Rv+ e+
  CCD23283.1 101 LRDKTIENRVVVER 114
                 **********9997 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.67
  Sas10_Utp3  22 a 22 
                 +
  CCD23283.1 156 D 156
                 1 PP

>> Phlebovirus_G1  Phlebovirus glycoprotein G1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.3   2.9e-05      0.26     131     233 ..     260     368 ..     243     372 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 2.9e-05
  Phlebovirus_G1 131 kkkakklsvplqdlvCqensddsskskrklkgvCkiGlvklkeCktltsaeevvpfivlknkgklyleklklknkevleedsfv......Cyekk 219
                     + + + +   l+d   q++++ s++++++  g   i   +  e + + +++e  +f  l n g   +ek k k++e + +++ +       ++ k
      CCD23283.1 260 HSRMQAMEEYLKDQTDQPDWESSIGANIVNHGKGGIKSSRASEKERKVTSYEEDNFTRLNNLGTSKIEKKKQKQRERMAKVNIIggedfsIFNSK 354
                     33348888899*********************9999999999999*******************************9999775521111166888 PP

  Phlebovirus_G1 220 kadesssekrelkk 233
                     +++e+s+++r+ kk
      CCD23283.1 355 RKMEDSTSRRGNKK 368
                     88888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1717  (0.0957666); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 2639.80
//
Query:       CCD23284.1  [L=204]
Description: hypothetical protein NDAI_0B02490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-41  142.7   6.5    1.7e-41  142.5   6.5    1.0  1  Vfa1      AAA-ATPase Vps4-associated protein 1
  ------ inclusion threshold ------
       0.03   14.0   0.0      0.086   12.5   0.0    1.8  2  Aida_C2   Cytoskeletal adhesion
       0.37   10.8   2.4       0.49   10.4   0.9    1.9  2  Prp19     Prp19/Pso4-like
       0.82   10.0   7.5         12    6.2   7.5    2.2  1  Mis14     Kinetochore protein Mis14 like
        3.8    7.0   7.2          6    6.3   7.2    1.3  1  DUF334    Domain of unknown function (DUF334)


Domain annotation for each model (and alignments):
>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5   6.5   4.8e-45   1.7e-41       1     181 []       3     201 ..       3     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 142.5 bits;  conditional E-value: 4.8e-45
        Vfa1   1 NlYtlRkVaekdakaCliCykpttsVLitednkkDffYvCesHLkD.kqFatpivdeeeeeaakkkkeleeeiekvkkeyeekqkkkkekekkk..... 93 
                 N+Y+ RkV+ kd + CliC+kptt+VL++++++ D+fY+C++HL+D ++F++pi+ +++e+++++ k++++e+++++k+ + ++         +     
  CCD23284.1   3 NEYVSRKVSLKDINGCLICQKPTTTVLYNKSGP-DWFYTCDIHLQDnPEFVKPIYGKDYETKTNRLKSVQQELHRIQKNNDPSSWDG------Wvgklf 94 
                 99******************************7.***************************65555556666666665555555444......144556 PP

        Vfa1  94 ..kekd...kkdkdkkkekekdkkkekek.........eeekkkelkkaeeeleekeeprvkkykLhkefyqsRlerkrqaeaakeneerlqdpee... 175
                   k+k+   +kdkdk+k+++kd +++++k         ++ +++e+++  +el++  +++++ky+L++++y++R++r+ ++++ ke+ + ++ pee   
  CCD23284.1  95 ikKNKNqspDKDKDKDKDENKDGDNNNNKvgnestgnrSDMLQREYQTLLDELTH-LKQNNRKYQLDNSLYENRVQRRIRTQRIKETYTATN-PEElaq 191
                 653333557888888888888888888889999****9999*************9.999999***************977766666666555.776788 PP

        Vfa1 176 ....fPsvPk 181
                     fP+vP+
  CCD23284.1 192 rlatFPNVPT 201
                 8999*****6 PP

>> Aida_C2  Cytoskeletal adhesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.4e-05     0.086      35      74 ..       9      48 ..       1      56 [. 0.90
   2 ?   -2.1   0.0      0.75   2.7e+03      87      98 ..     146     157 ..     138     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.4e-05
     Aida_C2 35 tvsvkDseGkdleesqdTpvgsrreenyvvfnanvelqte 74
                 vs+kD +G+ ++++ +T v ++++   + ++ +++lq +
  CCD23284.1  9 KVSLKDINGCLICQKPTTTVLYNKSGPDWFYTCDIHLQDN 48
                59***********************************987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.75
     Aida_C2  87 ElkHykekkkki 98 
                 El H k++++k 
  CCD23284.1 146 ELTHLKQNNRKY 157
                 999*99999986 PP

>> Prp19  Prp19/Pso4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.59   2.1e+03       5      12 ..      70      77 ..      61     102 .. 0.59
   2 ?   10.4   0.9   0.00014      0.49      10      59 ..     134     181 ..     126     191 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.59
                HHHHHHHH CS
       Prp19  5 iPslLstl 12
                + + L+ +
  CCD23284.1 70 VQQELHRI 77
                22223333 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Prp19  10 stlqnEWDalmletfelrkqleqtrqeLsqaLYqnDAAvrViArllkerd 59 
                  +lq E+  l+ e+ +l++++   + +L ++LY+n    r+ ++ +ke  
  CCD23284.1 134 DMLQREYQTLLDELTHLKQNNR--KYQLDNSLYENRVQRRIRTQRIKETY 181
                 579***************9766..5689******9877777777777765 PP

>> Mis14  Kinetochore protein Mis14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.5    0.0033        12      63     133 .]      48     153 ..      46     153 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHHHCCCHHHHHHCT--HHHHH--.....................................------SSSHHHHHHHHHHHHHHHHHHHHH CS
       Mis14  63 aPrkiaeayakelkaeleeldeyleainelek...................................qekkdpeeddededekerleelvkqyeeslks 126
                  P  +++ y k  ++ +++l++++++++ ++k                                   ++ ++  ++  +e++ +r + l+++y++ l +
  CCD23284.1  48 NPEFVKPIYGKDYETKTNRLKSVQQELHRIQKnndpsswdgwvgklfikknknqspdkdkdkdkdenKDGDNNNNKVGNESTGNRSDMLQREYQTLLDE 146
                 57778888999999999999999999999999999999999999999999999999888887765544555566666788999999999******9999 PP

                 HHHHHHH CS
       Mis14 127 lkelkeq 133
                 l  lk++
  CCD23284.1 147 LTHLKQN 153
                 9999985 PP

>> DUF334  Domain of unknown function (DUF334)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.2    0.0017         6       8      75 ..     108     179 ..      98     190 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0017
      DUF334   8 nsdkdikknketmntqtrskltgthsskiqkslen..eelselkkqnkl..vvkylaeikeqqdlrekelke 75 
                   dkd+ k+ ++ n ++   +tg +s+ +q+  +   +el+ lk++n+   +   l e + q+ +r +  ke
  CCD23284.1 108 DKDKDENKDGDNNNNKVGNESTGNRSDMLQREYQTllDELTHLKQNNRKyqLDNSLYENRVQRRIRTQRIKE 179
                 4567788888899999**************988764589****99997411234455666666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1947  (0.108595); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 1549.75
//
Query:       CCD23285.1  [L=1276]
Description: hypothetical protein NDAI_0B02500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-52  179.0   0.3    6.8e-36  124.0   0.7    3.5  2  Pkinase      Protein kinase domain
    6.2e-26   91.2   0.3    3.9e-23   82.0   0.2    3.2  2  Pkinase_Tyr  Protein tyrosine kinase
    1.6e-05   24.3   0.0     0.0096   15.3   0.0    2.4  2  Kinase-like  Kinase-like
  ------ inclusion threshold ------
      0.021   14.7   0.0       0.42   10.5   0.0    2.1  2  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   0.7   1.5e-39   6.8e-36       1     160 [.     184     374 ..     184     377 .. 0.89
   2 !   47.7   0.0   2.8e-16   1.2e-12     154     264 .]     418     547 ..     401     547 .. 0.82

  Alignments for each domain:
  == domain 1  score: 124.0 bits;  conditional E-value: 1.5e-39
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.....................HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEE CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.....................kkvlrEikilkklkhpnivrlyevfee..kdelylv 76 
                 ye +++lG+G+ GkV  a++  t++ vA+K+++++++ + ++                     +k+ rEi+i+kkl+h+++v+l+ev+ +  ++++ylv
  CCD23285.1 184 YEIIRELGHGQHGKVKLARDLITNNLVAIKIVDRHEKLSFSKrfkssfssssspsshkknkkdEKIKREIAIMKKLHHKHVVKLIEVLDDsnSRKIYLV 282
                 7899*****************************999887766778899999999****999999************************99777899*** PP

                 EE--TTEB....HHHHHH..HHSS..--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSC CS
     Pkinase  77 leyvegge....ladlle..rkgs..lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgt 160
                 ley+++ge     +d+le  ++g   ls + +++i++ ++ gleylH +giiHrD+Kp+N+L+d++g +Ki+DFG++  l+++s+ t+  g+
  CCD23285.1 283 LEYCSNGEikgcPKDVLEteARGPplLSFQSTREIIRGVILGLEYLHYQGIIHRDIKPANLLVDQNGTVKISDFGVSLALRTTSTSTHSSGS 374
                 ********5555344555652332348888**************************************************999987777776 PP

  == domain 2  score: 47.7 bits;  conditional E-value: 2.8e-16
                 BCTTTSCGGGS-HHHH.................TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS CS
     Pkinase 154 ltsfvgtseYlAPEvl.................keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg..etkeklpeasei 233
                 l +  gt+ + APE+                  k++++s  +D+W+lG+++y+ll+g  pf +e + + +ek++++  k+    +   +++++    + 
  CCD23285.1 418 LAKTAGTPAFFAPEIClgedaftkfnfqkndlfKGSSISFMIDIWALGITMYCLLFGMLPFISEYELDLFEKIINDPLKFPSFEElsSNNVSFISCGQE 516
                 77889999999999999999999998887777777999************************9999999999999944444443332445555555555 PP

                 -HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 seeakdllkkllkkdpkkRltaeellqhpyl 264
                  e akd+l++ll+k+p+kR+t+ el++hp++
  CCD23285.1 517 YELAKDVLNRLLEKNPSKRITIPELKKHPFI 547
                 999**************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.2   8.8e-27   3.9e-23      38     162 ..     239     371 ..     184     382 .. 0.71
   2 ?    2.0   0.0     0.023     1e+02     177     218 ..     450     490 ..     435     541 .. 0.79

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 8.8e-27
                  TTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHH....HHHHHT..CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEES CS
  Pkinase_Tyr  38 eeateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLl....kfLrkk..ekekltlkdllsfalqvAkGmeyLeskklvHr 127
                  +++++++ e++ +e++imkkl+h+++vkl+ v    +++++++v+ey+++G+++    + L+++    + l+++++ +++  v  G+eyL+ + ++Hr
   CCD23285.1 239 SHKKNKKDEKIKREIAIMKKLHHKHVVKLIEVLDdsNSRKIYLVLEYCSNGEIKgcpkDVLETEarGPPLLSFQSTREIIRGVILGLEYLHYQGIIHR 336
                  355666689999*********************9777888***********99622226777664445679999************************ PP

                  T-SGGGEEEEETTEEEE-STTTHEETTTSSEEEET CS
  Pkinase_Tyr 128 dlaarNvLlsenkvvkisDfGLardiekddeyvkk 162
                  d+   N L+++n +vkisDfG++ ++ ++++ +++
   CCD23285.1 337 DIKPANLLVDQNGTVKISDFGVSLALRTTSTSTHS 371
                  **********************9999666655433 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.023
                  HHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH CS
  Pkinase_Tyr 177 lkekkftsksDvWsfGvllwEiftlgespypglkneevlekl 218
                  +k ++++   D+W+ G++++ ++  g  p+ +  + +++ek+
   CCD23285.1 450 FKGSSISFMIDIWALGITMYCLLF-GMLPFISEYELDLFEKI 490
                  5666788889**********9887.88887665555555554 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.2e-06    0.0096     158     200 ..     326     371 ..     311     403 .. 0.73
   2 !    6.6   0.0   0.00093       4.2     225     254 ..     453     482 ..     417     535 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.2e-06
  Kinase-like 158 anLqakglvhgkftvdnllldekgglmlggft...aLvragtkvvl 200
                   +L+ +g++h ++++ nll d++g +++ +f+   aL++  t+   
   CCD23285.1 326 EYLHYQGIIHRDIKPANLLVDQNGTVKISDFGvslALRTTSTSTHS 371
                  69*****************************844456666666654 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00093
  Kinase-like 225 tkmthkldaWqlGlviyriwclklPltlat 254
                    +++ +d W+lG+++y +    lP+    
   CCD23285.1 453 SSISFMIDIWALGITMYCLLFGMLPFISEY 482
                  467999************999999986554 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.043   1.9e+02      32      77 ..     244     286 ..     236     312 .. 0.78
   2 ?   10.5   0.0   9.3e-05      0.42     166     186 ..     331     351 ..     303     359 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.043
                 S-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEEEEE-- CS
         APH  32 raaeeirrevallrlLakagv.pvPevlagdtddeeigllfalieyv 77 
                 + +e+i re a+++ L+   v +  evl+    d  ++  ++++ey+
  CCD23285.1 244 KKDEKIKREIAIMKKLHHKHVvKLIEVLD----DSNSRKIYLVLEYC 286
                 5799*************665646667776....55555567888876 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 9.3e-05
                 EEEE-SS-SGGGEEEC..TTE CS
         APH 166 tvllHgDlhpgNllvdpddgr 186
                 ++++H+D++p Nllvd++++ 
  CCD23285.1 331 QGIIHRDIKPANLLVDQNGTV 351
                 689*************55544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1562  (0.0871214); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.24s 00:00:01.14 Elapsed: 00:00:00.41
# Mc/sec: 9417.51
//
Query:       CCD23286.1  [L=355]
Description: hypothetical protein NDAI_0B02510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-05   24.7   0.2    2.9e-05   23.9   0.2    1.4  1  F-box-like  F-box-like
     0.0011   19.0   0.3      0.045   14.0   0.0    2.7  2  TPR_8       Tetratricopeptide repeat
      0.002   17.9   0.8     0.0047   16.8   0.8    1.6  1  F-box       F-box domain
     0.0032   17.2   0.2      0.012   15.4   0.0    2.1  2  TPR_1       Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.02   15.0   0.1       0.17   12.0   0.0    2.4  2  TPR_2       Tetratricopeptide repeat
      0.027   14.6   0.1      0.063   13.4   0.1    1.6  1  MIT         MIT (microtubule interacting and transport) domai
      0.028   14.1   0.1      0.059   13.1   0.1    1.5  1  TPR_11      TPR repeat


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.2   1.1e-08   2.9e-05       4      41 ..     117     156 ..     114     161 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.1e-08
  F-box-like   4 LPdEiLlqIFsy..L.ppsdLlrlalVCrrWrrvaldtplL 41 
                 LP+++Ll+I ++  L + +++++l+l+C++ + +++++ lL
  CCD23286.1 117 LPNDLLLKIIHHvvLmSGESWYNLSLTCSHLNKLCFHD-LL 156
                 9*********987755899****************988.55 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.8e-05     0.045       8      33 ..      35      60 ..      32      61 .. 0.87
   2 ?    2.3   0.0     0.098   2.5e+02       2      16 ..     135     149 ..     134     150 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                HHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  8 gsiylklgdyeeAkeyyekaleldpd 33
                g + +k g +  A+ yy+kal++d++
  CCD23286.1 35 GVLKEKDGSMSDAINYYRKALKIDEN 60
                566778899999************87 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.098
                 CHHHHHHHHHHHTT- CS
       TPR_8   2 eayynlgsiylklgd 16 
                 e++ynl+++++ l++
  CCD23286.1 135 ESWYNLSLTCSHLNK 149
                 79*******999987 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.8   1.8e-06    0.0047       5      40 ..     116     154 ..     113     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.8e-06
                 HS-HHHHHHHHHTS-HHH...HHHHCTT-HHHHHHHTTH CS
       F-box   5 rLPsevlrhILerLplsd...llalrrVSkgwrilidsd 40 
                  LP+++l++I+ ++ l++     +l++++ ++++l+ +d
  CCD23286.1 116 MLPNDLLLKIIHHVVLMSgesWYNLSLTCSHLNKLCFHD 154
                 69********************************99665 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.6e-06     0.012      12      33 ..      39      60 ..      34      61 .. 0.83
   2 ?   -2.9   0.0       2.9   7.5e+03       3       7 ..     136     140 ..     135     149 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.6e-06
                HHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1 12 fklgkydeAleyyekALelnPn 33
                 k g   +A+ yy+kAL++++n
  CCD23286.1 39 EKDGSMSDAINYYRKALKIDEN 60
                56677899************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.9
                 HHHHH CS
       TPR_1   3 alynl 7  
                 ++ynl
  CCD23286.1 136 SWYNL 140
                 79998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.8e-05      0.17       8      33 ..      35      60 ..      28      61 .. 0.80
   2 ?   -0.1   0.0      0.53   1.3e+03       2      16 ..     135     149 ..     134     150 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.8e-05
       TPR_2  8 GlayyklgdyeeAleafekAleldPn 33
                G + +k g   +A+++++kAl++d+n
  CCD23286.1 35 GVLKEKDGSMSDAINYYRKALKIDEN 60
                555566677789***********987 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.53
       TPR_2   2 ealynlGlayyklgd 16 
                 e +ynl l + +l++
  CCD23286.1 135 ESWYNLSLTCSHLNK 149
                 78*****99998876 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   2.4e-05     0.063       3      32 ..      27      56 ..      25      68 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
         MIT  3 kAlelvkkAveeDnagnyeeAlelYkeale 32
                 A+e+ ++ v +++ g  ++A+++Y++al+
  CCD23286.1 27 GAIEIWEQGVLKEKDGSMSDAINYYRKALK 56
                59**************************96 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.3e-05     0.059       8      32 ..      42      66 ..      40      68 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.3e-05
      TPR_11  8 GkyeeAieaYkkAlkldPdnaeayy 32
                G   +Ai+ Y+kAlk+d++   +y 
  CCD23286.1 42 GSMSDAINYYRKALKIDENVEKIYR 66
                66789*************9888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2540.69
//
Query:       CCD23287.1  [L=710]
Description: hypothetical protein NDAI_0B02520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.4e-37  127.0   7.3    1.4e-36  125.9   7.3    1.5  1  Fungal_trans  Fungal specific transcription factor domain
      5e-10   39.3   8.6    8.7e-10   38.6   8.6    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   7.3   1.5e-40   1.4e-36       2     267 .]     205     465 ..     204     465 .. 0.84

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 1.5e-40
  Fungal_trans   2 drffsnfh.pqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeili..........hedfssp 87 
                   ++ff++++ ++f ++h+++fl+ ++++n++k +y+s+ l++ai alG+  s+s t ++ +s + +     +++ ++   +          + d s++
    CCD23287.1 205 SLFFKWLYpGHFMFIHRETFLSAFFGDNNTKDYYCSEELIYAIAALGSKISNSKTDSKLFSNSFSY----YQHSKKIV-LekifhlqrnnNLDSSTS 296
                   68*****************************************************99977766533....22223222.246667888886677777 PP

  Fungal_trans  88 ssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlp 184
                   ss+l i+q+Ll+l++y ++ ++++++++++g+a+r+a+++gLh np+ + +    +l+  +++ r R++w++++ D +i++ +Gr ++l+ s+ ++p
    CCD23287.1 297 SSKLAIIQTLLCLSFYDIGNGENPMAWYLSGLAFRIAHEIGLHLNPKAWTHVYEDELTMLDIKVRSRIYWGCYIADHLISILFGRSTTLRLSNSTIP 393
                   777***********************************************98877777777889***********************9898888888 PP

  Fungal_trans 185 ....LPcddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnWre 267
                       LP+ ++ l+     +++++++      ++ +++ + l+ L++i+  +ag+++  +   +q+++       +++++++++nWr+
    CCD23287.1 394 etdeLPNIENGLE-----DYIYDQN----AVSTTSNPLKKLIVLSRITEVFAGKIFVQSESFRQKSEF------LNRFNKEMKNWRK 465
                   6666666666333.....3333333....3466799*****************777777776666666......9**********95 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   8.6   9.7e-14   8.7e-10       2      39 ..      44      79 ..      43      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 9.7e-14
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39
                aC++Crk ++KCd+ +P CsnC+k  ++C+ y e+  r
  CCD23287.1 44 ACQHCRKIRRKCDMINP-CSNCIKFDTTCV-YAEKDMR 79
                9****************.************.9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       973  (0.0542696); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.49
# Mc/sec: 4316.60
//
Query:       CCD23288.1  [L=112]
Description: hypothetical protein NDAI_0B02530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 810.27
//
Query:       CCD23289.1  [L=1572]
Description: hypothetical protein NDAI_0B02540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.5e-134  447.0   0.3   8.8e-134  446.3   0.1    1.5  2  EPSP_synthase    EPSP synthase (3-phosphoshikimate 1-carboxyv
   4.9e-100  334.0   0.0   7.9e-100  333.3   0.0    1.3  1  DHQ_synthase     3-dehydroquinate synthase
    1.6e-58  198.7   0.0    2.7e-58  197.9   0.0    1.4  1  DHquinase_I      Type I 3-dehydroquinase
    4.4e-36  124.4   0.1      1e-34  119.9   0.0    2.3  2  SKI              Shikimate kinase
    4.2e-20   71.8   0.0    1.2e-19   70.4   0.0    1.8  1  Shikimate_dh_N   Shikimate dehydrogenase substrate binding do
    8.9e-11   41.4   0.5    1.8e-10   40.4   0.5    1.6  1  SDH_C            Shikimate 5'-dehydrogenase C-terminal domain
    5.3e-07   29.8   0.0    1.3e-06   28.5   0.0    1.6  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
    1.3e-06   28.4   0.0    3.3e-06   27.0   0.0    1.7  1  Fe-ADH_2         Iron-containing alcohol dehydrogenase
     0.0072   16.5   0.0       0.13   12.5   0.0    2.5  2  AAA_33           AAA domain
  ------ inclusion threshold ------
       0.03   15.0   0.0        0.1   13.3   0.0    1.9  1  CoA_binding      CoA binding domain
      0.035   14.3   0.0       0.53   10.5   0.0    2.5  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.045   13.1   0.1        0.1   11.9   0.1    1.5  1  6PF2K            6-phosphofructo-2-kinase
      0.058   13.4   0.0       0.18   11.8   0.0    1.9  1  AAA_14           AAA domain
      0.075   12.5   0.4       0.88    9.0   0.1    2.8  2  ComA             (2R)-phospho-3-sulfolactate synthase (ComA)


Domain annotation for each model (and alignments):
>> EPSP_synthase  EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  446.3   0.1  6.9e-137  8.8e-134       8     417 .]     405     845 ..     398     845 .. 0.95
   2 ?   -3.7   0.0       2.9   3.7e+03     386     410 ..     874     898 ..     873     899 .. 0.89

  Alignments for each domain:
  == domain 1  score: 446.3 bits;  conditional E-value: 6.9e-137
                    EEEEE--B-HHHHHHHHHHHGGGBSSEEEES---SHHHHHHHHHHHHTT.EEEEEECTSEEEEEGTT..--EE-HHHHTT-GGGGGGHHHHHHHHS CS
  EPSP_synthase   8 egevkvpGsksisnralllAaLaegestitnlLdseDvrsmlealreLgaeiikldeekevviveglggsfeapeelvldlgnsgtalrlLtalla 103
                    e+ +++pGsksisnral+lAaL++g+++i+nlL+s+D+++ml a++ L a++i  ++++e++++eg+gg+  +++ + l+lgn+gta+r+Lt+++a
     CCD23289.1 405 EKFITPPGSKSISNRALILAALGKGQCKIRNLLHSDDTKYMLSAIQDLNAATITSEDNGETIVIEGHGGEALSACPNELYLGNAGTASRFLTSVAA 500
                    66799******************************************************************************************* PP

                    EES.....SEEEEE-SBTTCGS--HHHHHHHHHTT-EEEEETTEEEEEESEET...SS-BEEEEETSSTTHHHHHHHHHHHTTSBS..EEEEES.. CS
  EPSP_synthase 104 las.....gevvLtGdesirkRPidrlldaLrqlGaeieveegenkaplkvkg...lklkgveikaevsSqqvtsllllaallaeg..ttelee.. 187
                    l++       v+LtG++++++RPi +l+d+Lr +G++i++ + e+++p+kv++   ++++++e++a+vsSq+v+s+l++a+ +a++  t+ l++  
     CCD23289.1 501 LVNstptkDHVILTGNARMQQRPIGPLVDSLRINGIKIDYVKSEGCLPIKVDTssvFQGGRIELAATVSSQYVSSILMCAP-YAQEpvTLSLVGgk 595
                    *888999999******************************************999**************************.7777699999999* PP

                    -TTHHHHHHHHHHHHHTT-EEEETTSSEEEEEE--SS..B--EEEE--B-HHHHHHHHHHHHHTT-EEEEES--GGGGHHH..HHHHHHHHTTEEE CS
  EPSP_synthase 188 lasepsiddtlkmlkkfgikietsgteesitvkGkek..lpgteyvvegDassAayflvaAaitggevtvenvginslqGdiealdeilekmgaei 281
                    ++s +++d+t+km++kfg+++ +s+te +++   k    +p+ eyv+e+DassA+y+l++Aa+tg++vtv n+g +slqGd++++  +l  mg+++
     CCD23289.1 596 PISILYVDMTIKMMEKFGVNVIKSKTEPYTYHISKGTyvNPK-EYVIESDASSATYPLAFAAMTGTTVTVSNIGYESLQGDAKFAPLVLGPMGCTV 690
                    ***************************987766555565888.***************************************************** PP

                    EEESTSEEEEEET...TS--BEEEEEBGSTTSBHGGGHHHHHH........HHHTSBSEEEEEGSSSTTCCHHHHHHHTTT-EEEEETTEEEEEEE CS
  EPSP_synthase 282 tqeedasivvgps...glklkdvdietlpdeaptlavlaafae........gttviegiaelrvketdrlaamateLrklGaeveeeedgliiipa 366
                    +q++++++v gp+    + lk+vd+e ++d+++t++v+aa+a+        + t+iegia++rvke++r+ amateL+k+G+ ++e++dg+++++ 
     CCD23289.1 691 KQTATSTTVTGPKvgsLKPLKHVDMEPMTDAFLTACVVAAIAHddgdskseNITTIEGIANQRVKECNRILAMATELEKFGVRTKELPDGIQVYGL 786
                    ************9999999*******************************999***************************************8887 PP

                    EE.....EB-E.EEE-TTSTTTTHHHHHHHHHSBS...EEEEETTHHHHHHSSSHHHHH CS
  EPSP_synthase 367 ek....qlkga.evesydDhRiamalalaglvaeg...eveiddiectdksfpefeekL 417
                    ++    q   a  ++sydDhR+am+++l++ +++     v+i++++ct+k++p+++++L
     CCD23289.1 787 NSlkdlQCPAAqGIHSYDDHRVAMSFSLLAGMVSTapnGVRIQERHCTAKTWPGWWDVL 845
                    7777665444426********************999999******************87 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.9
                    HHHHHHHHSBSEEEEETTHHHHHHS CS
  EPSP_synthase 386 alalaglvaegeveiddiectdksf 410
                    + +++g++a+g+++i +  +t+ ++
     CCD23289.1 874 SVVIIGMRAAGKTTISKWCATTLGY 898
                    679************9999998887 PP

>> DHQ_synthase  3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.3   0.0  6.2e-103  7.9e-100       2     261 ..      73     354 ..      72     355 .. 0.97

  Alignments for each domain:
  == domain 1  score: 333.3 bits;  conditional E-value: 6.2e-103
                   EEE-SSGGGCCHHHHHHHHHHHHHTT--TT-EEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE---SEE CS
  DHQ_synthase   2 lvvpdgeksKsletlekildalleakleRksllialGGGvvgDlaGfvAatylRGvrfvqvPttllaqvDssvGgKtainlplgKNliGafaqPkav 98 
                   + v++ge+ Ks et ++i d+ll+++++R++++ia+GGGv+gD++GfvAat++RGvrf+q+Pt+lla+vDss+GgKta+++plgKN+iGaf+qP++v
    CCD23289.1  73 YEVSPGEANKSRETKASIEDYLLKQGCTRDTVIIAIGGGVIGDMIGFVAATFMRGVRFIQIPTSLLAMVDSSIGGKTAVDTPLGKNFIGAFWQPEFV 169
                   6799********************************************************************************************* PP

                   EEEGGGGGGS-HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHC.............TTTHHHHHHHHHHHHHHHHHHHHHCCTTTTGGGGGGTT CS
  DHQ_synthase  99 lidlevLktLperelraGlaEviKyalikdeelfelleenaeallk.............eeeeealeeliarsievkaevveeDekekglralLnlG 182
                   l+d+ +L++Lp+re+++G+aEviK+a+i+++e f++le+na ++l+             e+  +++ +l+ +si+vkaevv++De+e+glr+lLn+G
    CCD23289.1 170 LVDIMWLSSLPRREFINGMAEVIKTAAIWNAEEFTRLEDNAIKFLEvvnngdsdestaiETILNHVYKLVLESIKVKAEVVSSDERESGLRNLLNFG 266
                   ********************************************999*****999988866778888999*************************** PP

                   HHHHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTT---STTTT...........-HHHHHHHHTTCTTX CS
  DHQ_synthase 183 HtigHaiEallgyekllHGeaVaiGmvlaaelseklgllkkeeverllkllkklglpvslkel..........leveellealkkDkkv 261
                   H+igHa+Ea+l++ + lHGe+V+iGm+++aels++lg+l++++v+rl k+l+++glp++ +e+          + ++ ll++++ Dkk+
    CCD23289.1 267 HSIGHAYEAILTP-QALHGECVSIGMIKEAELSRYLGILSPTQVARLSKILSAYGLPIAPEEKwfkdltlnkeTPLNVLLDKMSIDKKN 354
                   *************.*********************************************9999999999999889999*********98 PP

>> DHquinase_I  Type I 3-dehydroquinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.9   0.0   2.1e-61   2.7e-58       1     229 []    1062    1282 ..    1062    1282 .. 0.93

  Alignments for each domain:
  == domain 1  score: 197.9 bits;  conditional E-value: 2.1e-61
                   EEEE--SSHHHHHHHHHHHTTS-SEEEEEGGG-.TT.THHHHHHHHHHHHHH.TTS-EEEE---GGGT-S.SSS-HHHHHHHHHHHHHCT-SEEEE CS
  DHquinase_I    1 cvpitgktleeilaelesgkekaDlvElRlDllketseaedvseeleelrst.sdlpliftlrtkaeggrfkrkseeeylellrtaielgadyvDv 95  
                   +v++t ++l e  ++l+ ++ ++D+vE+R+D+l++ ++ ++v+++l+ lr    +lp+ift+rtk++gg+f+++++e+ +el++ta+++g++y+D+
   CCD23289.1 1062 FVCLTFEDLAEHDTKLTPITYGCDAVEVRVDHLANYDP-DYVNRQLSILRTStDSLPIIFTIRTKKQGGNFPDEEYEAIEELYKTALKSGVEYIDL 1156
                   6899999999988999998669***********99966.************966****************************************** PP

                   EGG-.HHGHHHHHHHHHHHTT-EEEEEEEESS----HH..HHHHHHHHHHHTT-SEEEEEE--SSHHHHHHHHHHHHHHHHHT-SS-EEEEE-TTT CS
  DHquinase_I   96 ElteapeeskkrlieekreggtkvIvSyhdfegtpsae..elkallekmqalgaDivKiavmaksieDvlrllsltseakeekdeaplIamamGel 189 
                   Elt +p++ + ++ ++k  + tk+I+S+hdf    ++   e+++++ ++ al+ Di+K++ +a+++eD+l l +++  +ke    +plIa++m e 
   CCD23289.1 1157 ELT-LPTSIQYNVLNNK--RFTKIIGSHHDFAAAYPWGdaEWENRYIQALALDVDIIKFVGTATKFEDNLVLEKFRDAHKE----KPLIAINMTEC 1245
                   **5.6655556899999..9*****************999***********************************976655....9********** PP

                   TGHHHCHHHHHTB-EEEEESSS-..SSTT-EEHHHHHHHH CS
  DHquinase_I  190 GkiSRilgevfGspvtfasleeakasapGqltarelreil 229 
                   GkiSR+l++v+ +p+t   l +a  sapGqlt+++++ei+
   CCD23289.1 1246 GKISRVLNTVL-TPITSHLLPSA--SAPGQLTLKQINEIY 1282
                   ***********.*******6666..*************98 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.2   2.5e+02      50      73 ..      90     113 ..      81     119 .. 0.87
   2 !  119.9   0.0   8.1e-38     1e-34       1     143 [.     881    1032 ..     881    1045 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.2
                 HHHHHHHHHCCCSSEEEEE-TTGG CS
         SKI  50 lEsevlkelleeeglViatGGGav 73 
                  E  +lk+ ++++ ++ia GGG++
  CCD23289.1  90 IEDYLLKQGCTRDTVIIAIGGGVI 113
                 5777899999999*********97 PP

  == domain 2  score: 119.9 bits;  conditional E-value: 8.1e-38
                  TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT.S-HHHHHHHHHHHHHHHHHHHHHHHHCCCS...SEEEEE-TTGGGSHHHHHHHH....HHSEEE CS
         SKI    1 mGaGKstvGkllAkklglefiDlDeliekrtg.ksiaeifeeegeegFrelEsevlkelleee...glViatGGGavlseenrellk....ekgivi 89  
                  ++aGK+t+ k++A +lg++++DlD+l+e++    si++++++ g+e+Fr +E++++ke++e+    g+V++tGGG+v+++e+r +lk    ++giv 
  CCD23289.1  881 RAAGKTTISKWCATTLGYKWVDLDDLFEEQYAdGSIKDFVAKFGWEKFRSEETRIFKEVIEQYgdkGYVFSTGGGIVENAESRVHLKkfvsQGGIVM 977 
                  579************************8887769****************************9999*********************9**99***** PP

                  EEE--HHHHHHHHHHTTSSGGGCSCHHHHHHHHHHH.HHHHHHCCSSCEEEECTS CS
         SKI   90 yLdvsleellerlkadkeRPllqekskeeelleela.ereplyeeaadvvvdese 143 
                  +L++++ee++ +lk+d++RP++ e+ +e ++++e + + +++y+ +a ++++e e
  CCD23289.1  978 HLHRDIEETIVFLKSDPTRPAFVEEIREVWERREKWyKDCSNYTFFAPHCSTEVE 1032
                  **************************************************99866 PP

>> Shikimate_dh_N  Shikimate dehydrogenase substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   9.2e-23   1.2e-19       1      83 []    1295    1377 ..    1295    1377 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 9.2e-23
                      EEESS-TT-SHHHHHHHHHHHCTSSEEEEEEE-SCCTHHHHHHHHHH..TTESEEEE-TTSCCHHHGGSSEE-HHHHHHT--SEE CS
  Shikimate_dh_N    1 viGnpikhSlSPaihnaafkalglngsyeafeveedelekaveelra..lglaGlnvTiPfKeaviplldelseeAkaigAvNti 83  
                      v+G pi hS+SP++hn+ ++ lgl+++++  e++  + e + +el +  ++l Gl vTiP+K ++i+++ el+++AkaigAvNt+
      CCD23289.1 1295 VVGTPIGHSRSPILHNTGYELLGLPYNFDKYETD--SAEVISKELLEgkPNLGGLAVTIPLKLDIIKYMSELTDAAKAIGAVNTV 1377
                      89*******************************9..77777777766669**********************************8 PP

>> SDH_C  Shikimate 5'-dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.5   1.4e-13   1.8e-10       1      30 [.    1540    1569 ..    1540    1570 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.4e-13
                  HHHHHHHHHHHHHHHHHS----HHHHHHHH CS
       SDH_C    1 GLgMLveQgaeqFelWTGrepPvevMreal 30  
                  G +MLv+Qg++qFe WTG ++P++++ +a+
  CCD23289.1 1540 GAQMLVHQGVAQFEKWTGFKAPYKAIFQAV 1569
                  779***********************9997 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0     1e-09   1.3e-06       9      83 ..    1407    1483 ..    1399    1493 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 1e-09
                    ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET-EEEEGCGHHH...HHHT-SEEEE-S CS
  Shikimate_DH    9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgeeiealkleelke...llaeadvvisat 83  
                    s+k+   l+iGaG +++ ++ +L++ g+ k++ +NRt  + +el e++ +e ++++ ++++++   + + + + +s++
    CCD23289.1 1407 SVKGTAGLIIGAGGTSRAAVFALHKMGCSKIFMINRTTPKLEELKESFPTE-FNIVVVNSIEQaeqAKEPVGIAVSCV 1483
                    56777789****************************************555.66665555554000444445555555 PP

>> Fe-ADH_2  Iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.5e-09   3.3e-06      19     249 ..      36     287 ..      18     288 .. 0.57

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.5e-09
    Fe-ADH_2  19 lkkvllvaden.....tkkaagekveeslkeagikvevve..eveeeadleeveklveal...reketdlvvavGgGtiiDiakyvsak..lnvpyvsv 105
                  ++ +++ d+n      +k + ++ ++sl ++  ++ ++e    e++++ e+ +++ + l     ++ ++++a+GgG+i D+  +v+a+  ++v+++ +
  CCD23289.1  36 SSTYVIINDTNlskvsYYKSLLNEFQSSLPQES-RILTYEvsPGEANKSRETKASIEDYLlkqGCTRDTVIIAIGGGVIGDMIGFVAATfmRGVRFIQI 133
                 456677777774444455566677777776553.33323200233344444444555544221335556***************9986532799***** PP

    Fe-ADH_2 106 pTaa......SvDGfaspgaslvvdgkkrtvakaaaPlaviaDldvlaeAPrrllasGvGDllgkytaladwklanevseplaklsaamvqeaaeklve 198
                 pT++      S  G +++  +l ++     +     P  v++D+  l+  Prr    G+++++    a+   +  +++++ + k          ++ ++
  CCD23289.1 134 PTSLlamvdsSIGGKTAVDTPLGKN----FIGAFWQPEFVLVDIMWLSSLPRREFINGMAEVIKT-AAIWNAEEFTRLEDNAIKFLEVVNNGDSDESTA 227
                 **96443333455555555555555....3444567**************************954.444333333344443333322222222333332 PP

    Fe-ADH_2 199 dkk.etealeelleal..alsgigisrpaSG......sEHliSHaldmlalkqalHGeqV 249
                  +    ++ + +le++    +++++    SG        H i Ha++++ + qalHGe V
  CCD23289.1 228 IETiLNHVYKLVLESIkvKAEVVSSDERESGlrnllnFGHSIGHAYEAILTPQALHGECV 287
                 222123344444444332333444433334411111146***********9******987 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.37   4.8e+02      49     109 ..      16      78 ..      11      92 .. 0.73
   2 !   12.5   0.0   9.8e-05      0.13       2      40 ..     875     913 ..     875     994 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.37
      AAA_33  49 trvldrlyqilnelarkalsagrnvildatnlsr.rerarflklarrlgvp..vrivvvetdee 109
                 ++v  +++ ++ e++ k +s+   vi+  tnls+ +  + +l+ ++  + p   ri++ e+++ 
  CCD23289.1  16 IHVGYKIHSHIVETIYKHCSSSTYVIINDTNLSKvSYYKSLLNEFQ-SSLPqeSRILTYEVSPG 78 
                 5667778889999*******************98777788888776.33332256666666655 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 9.8e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgt 40 
                 v+++G+ ++GK+t ++  +  lg+  ++ d+l++  +++
  CCD23289.1 875 VVIIGMRAAGKTTISKWCATTLGYKWVDLDDLFEEQYAD 913
                 789****************************99976663 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.1e-05       0.1       7      73 ..    1414    1486 ..    1409    1490 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.1e-05
                   EEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEET.......TEEEESCHHHHHHHCT.TTEEEEES-HH CS
  CoA_binding    7 iviGagglgiaglyhfkeklkygikavfgvnprkvgtevl.......glpvyksvdeleekte.vdvavitvPae 73  
                   ++iGagg+ +a ++  +++   +i ++  ++p+   +e +       ++ v +s++++e+  e v +av +vPa+
   CCD23289.1 1414 LIIGAGGTSRAAVFALHKMGCSKIFMINRTTPK--LEELKesfptefNIVVVNSIEQAEQAKEpVGIAVSCVPAD 1486
                   69*****************99999999999999..444445689*****************956*********97 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.66   8.5e+02      84     101 ..    1141    1164 ..    1138    1187 .. 0.74
   2 ?   10.5   0.0   0.00041      0.53       2      78 ..    1414    1484 ..    1414    1491 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.66
                       HHHHHHHHHT-EEEE......SS- CS
  Sacchrp_dh_NADP   84 dvlkaCietgvhyvd......tsi 101 
                       ++ k++++ gv y+d      tsi
       CCD23289.1 1141 ELYKTALKSGVEYIDleltlpTSI 1164
                       67899**********776666665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00041
                       EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEEE-SS CS
  Sacchrp_dh_NADP    2 liiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvvnlsp 78  
                       liiGaG++++a++  l++ +    +i  + r+  kle+l+++   +  e+  + ++ +e+  +++ +  ++ v+++p
       CCD23289.1 1414 LIIGAGGTSRAAVFALHKMGCS--KIFMINRTTPKLEELKES---FPTEFNIVVVNSIEQ-AEQAKEPVGIAVSCVP 1484
                       79*****************988..9**************965...445555555555555.5566566677777766 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   8.2e-05       0.1       4      34 ..     863     893 ..     860     904 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.2e-05
                 XHHHHT..S-EEEEEESSTTSSHHHHHHHHH CS
       6PF2K   4 stvtnlknsklvivlvGLpargKtyiskklt 34 
                 ++++n +n +  +v++G++a gKt+isk   
  CCD23289.1 863 TITNNSNNVRKSVVIIGMRAAGKTTISKWCA 893
                 45677889999****************9655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.18       2      48 ..     872     913 ..     871     948 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkklad 48 
                 rk +vi G+R +GKTt+ k ++ +l      +  ++ldd  ++++ad
  CCD23289.1 872 RKSVVIIGMRAAGKTTISKWCATTLG-----YKWVDLDDLFEEQYAD 913
                 5789*************998887766.....7777777766666554 PP

>> ComA  (2R)-phospho-3-sulfolactate synthase (ComA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.69   8.9e+02     141     175 ..     227     262 ..     199     278 .. 0.69
   2 ?    9.0   0.1   0.00069      0.88      38      89 ..     920     971 ..     883     977 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.69
                 T..--CCHHHHHHHHHHHHTECEEEE--TTT--SSTT CS
        ComA 141 e..sdveklieeakrdleaGaekviiEaresGitegv 175
                 +  + ++++ + + + ++  ae+v  + resG   ++
  CCD23289.1 227 AieTILNHVYKLVLESIKVKAEVVSSDERESGL-RNL 262
                 23366788889999999999***********98.555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00069
                 EEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHH CS
        ComA  38 glKlgggtsallpeeilrekielahehgvyvstGgtlfEaalaqgkvdeyle 89 
                 ++K+g+  +   +++i +e+ie + + g  +stGg ++E a ++ ++++++ 
  CCD23289.1 920 VAKFGWEKFRSEETRIFKEVIEQYGDKGYVFSTGGGIVENAESRVHLKKFVS 971
                 36***************************************99999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1572 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.99u 0.31s 00:00:01.30 Elapsed: 00:00:00.47
# Mc/sec: 10073.24
//
Query:       CCD23290.1  [L=354]
Description: hypothetical protein NDAI_0B02550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-10   40.7   0.0    7.9e-10   38.5   0.0    2.0  1  adh_short     short chain dehydrogenase
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.078   12.5   0.0    2.1  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   8.8e-14   7.9e-10       1     184 [.      11     242 ..      11     248 .. 0.78

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 8.8e-14
                 SEEEEESTTSHHHHHHHHHHH.....HTT-EEEEEESCHHHHHHHHHHHHHT...TSE......EEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE-- CS
   adh_short   1 kvvlvtGassGIGraiakela.....keGakvvvvdrseekleevakelkee...gak......alaiqvDvtdreevealvekavkklgkldvLvnNA 85 
                 kv+++tG  s +G++ia++++     +   + vv++r+  +++e+++ +k+    + k      + ++ vD t++ +v +++ +  k ++ ++ +  NA
  CCD23290.1  11 KVIVITGTNSNLGLNIAYRFIdtsdkETRLTFVVTSRTLPRVKEAINLIKAYthkS-KrtgivdYDYFLVDFTNMVSVLNAYYELTKTYDAIHYFFVNA 108
                 89******************9333222335567799**9***99999999887642.235555588999*****************************9 PP

                 -S.....................S--SSGGGCSHHHHHHH.....................HHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB CS
   adh_short  86 Gi.....................tgsgpfselseeewerv.....................ievNltgvflltravlpamlkqssGrIvnvsSvagkvp 142
                 +                      +               v                     ++ N++g++ l + +lp  l++ +G+I+ +sS+ +  +
  CCD23290.1 109 AQgvydgidwvgamkevianpleA---------------VtnptykmqkvgvkskdnmglvFQANVFGPYYLLHKLLPL-LSAGNGTIIWISSIMSGPK 191
                 888899997666666666555551...............3333344444455555555666******************.66***********998666 PP

                 -TTB.........HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSS CS
   adh_short 143 vagv.........aaYsAsKaavagltrslakelaptgirvnavaPGlvdT 184
                 + ++         ++Y  sK  v+ l  +  kel++ gi   +v+PG++ +
  CCD23290.1 192 YLSLqdiellrtdSSYEGSKRLVDLLHLATYKELKSMGIHQYIVQPGIFTS 242
                 544322333333389********************************9875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.049   4.4e+02      45      78 ..      76     109 ..      21     117 .. 0.83
   2 ?   12.5   0.0   8.7e-06     0.078      90     131 ..     146     188 ..     130     242 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.049
                   EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE--- CS
  adh_short_C2  45 vlecDVtdeeqvealveevvekfgklDilvnnag 78 
                   ++ +D t+  +v ++  e++++++ +++++ na+
    CCD23290.1  76 YFLVDFTNMVSVLNAYYELTKTYDAIHYFFVNAA 109
                   4778999999999999999999999999999988 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 8.7e-06
                   H-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGG CS
  adh_short_C2  90 tsreefdraldvnlyslfllakaalplmkeg.gsivnlssvga 131
                    s++++  +++ n+ + ++l++ +lpl+ +g g i+ +ss+ +
    CCD23290.1 146 KSKDNMGLVFQANVFGPYYLLHKLLPLLSAGnGTIIWISSIMS 188
                   57899999******************999888********955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2541.93
//
Query:       CCD23291.1  [L=645]
Description: hypothetical protein NDAI_0B02560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-82  272.4   1.3    8.1e-21   74.2   0.0    4.2  4  CH         Calponin homology (CH) domain
    2.1e-06   28.1   1.3    2.4e-05   24.7   0.1    3.0  3  EF-hand_7  EF-hand domain pair
    2.1e-06   27.5   0.1      0.016   15.1   0.0    3.6  3  CAMSAP_CH  CAMSAP CH domain
    0.00049   20.1   0.2       0.17   12.0   0.0    3.3  3  CH_2       CH-like domain in sperm protein
  ------ inclusion threshold ------
       0.11   12.1   0.1         25    4.7   0.0    3.1  3  EF-hand_1  EF hand


Domain annotation for each model (and alignments):
>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.1     1e-21   3.6e-18       2     106 ..     142     259 ..     141     261 .. 0.93
   2 !   73.5   0.0   3.8e-24   1.4e-20       2     108 ..     290     392 ..     289     393 .. 0.97
   3 !   74.2   0.0   2.3e-24   8.1e-21       3     107 ..     415     522 ..     413     524 .. 0.92
   4 !   55.1   0.0     2e-18   7.3e-15       4     106 ..     539     642 ..     536     645 .] 0.96

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 1e-21
                 HHHHHHHHHHHHHHTTSTTSSTT........SCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT.......HHHHHHHHHHHHHHHHHHTTCHTTSS-H CS
          CH   2 eqkkellrWinshleeagpkvkv........edfeedlrDGvlLckLlnklapglvdkkklnks.......efkkleNinlaldvaekklgvpkvliea 85 
                 e+++e+++ in++l+++ +             ++++ ++DG++L kL+n   p+++d + ln+        +f++ eN+n ++++a+ ++g+  v++ +
  CCD23291.1 142 EERREFTKHINQVLAGDEDIG-YmlpfpedtFQLFDECKDGLVLSKLINDSVPDTIDTRVLNMPknnkrlnNFQASENANIVINSAK-AIGCVVVNVHS 238
                 78999*********8874433.3699999889999**************************99899******************999.*********** PP

                 HHHHTTSHHHHHHHHHHHHHH CS
          CH  86 edlvegknksvltllaqLfra 106
                 ed++egk++++l+l++q++r+
  CCD23291.1 239 EDIIEGKEHLILGLIWQIIRR 259
                 *******************97 PP

  == domain 2  score: 73.5 bits;  conditional E-value: 3.8e-24
                 HHHHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTSS-HHHHHTTSHHHHHHHH CS
          CH   2 eqkkellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnksefkkleNinlaldvaekklgvpkvlieaedlvegknksvltll 100
                 ++++ llrW+n+hl++a+++++v++f++d +DG  +  Lln+lap l++k+ l  + ++ l+++++ l  ae kl ++k+l ++  lv g++k++l+++
  CCD23291.1 290 PPEQILLRWFNYHLKQANWGRRVTNFSKDVSDGENYTILLNQLAPTLCSKDPL--QTTDLLQRAEQILVNAE-KLECRKYL-TPRALVAGNPKLNLAFV 384
                 57999******************************************999999..79***************.********.***************** PP

                 HHHHHHHH CS
          CH 101 aqLfrafq 108
                 a+Lf++++
  CCD23291.1 385 AHLFNTHP 392
                 ****9986 PP

  == domain 3  score: 74.2 bits;  conditional E-value: 2.3e-24
                 HHHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT........HHHHHHHHHHHHHHHHHHTTCHTTSS-HHHHHTTSH CS
          CH   3 qkkellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnks........efkkleNinlaldvaekklgvpkvlieaedlvegkn 93 
                 + + ++ W+ns l      + v +++edl+DG++L++  nk+ p++vd+k++nk+        +fk+leN+n+a+++ + + g+++v ie +d+ +g++
  CCD23291.1 415 EARVFTLWLNS-LD---VDPPVVSLFEDLKDGLILMQAYNKVMPNTVDFKHVNKKptsgvelsRFKALENTNYAVELGK-HNGFSLVGIEGSDILDGNK 508
                 567899*****.53...3445689****************************************************888.******************* PP

                 HHHHHHHHHHHHHH CS
          CH  94 ksvltllaqLfraf 107
                  ++l+l++qL+r++
  CCD23291.1 509 LLTLGLVWQLMRRN 522
                 ***********986 PP

  == domain 4  score: 55.1 bits;  conditional E-value: 2e-18
                 HHHHHHHHHHHHTTSTTSSTTSCHH.HHHTTSHHHHHHHHHHSTTTSSGGGSTTT..HHHHHHHHHHHHHHHHHHTTCHTTSS-HHHHHTTSHHHHHHH CS
          CH   4 kkellrWinshleeagpkvkvedfe.edlrDGvlLckLlnklapglvdkkklnks..efkkleNinlaldvaekklgvpkvlieaedlvegknksvltl 99 
                 + ++l+W ++++++ g+++++++f+  +l++ ++L+++ln +apg v+++ +++   e+++  N++la+++a+ klg   +l  +ed+ e++ +++lt+
  CCD23291.1 539 DSQILKWAQDQVAKGGRSSTIRSFKdPSLSNAHFLLDVLNGIAPGYVNYDLVAPGnnEEERYANARLAISIAR-KLGALIWL-VPEDINEVRARLILTF 635
                 6799*********************99*************************99999*************999.********.**************** PP

                 HHHHHHH CS
          CH 100 laqLfra 106
                 +a+L+++
  CCD23291.1 636 VASLMSI 642
                 ****986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   6.7e-09   2.4e-05       6      70 ..      23      80 ..      19      81 .. 0.89
   2 ?    0.1   0.0      0.32   1.2e+03      19      61 ..     139     183 ..     135     185 .. 0.68
   3 ?   -1.7   0.0       1.2   4.2e+03      27      51 ..     518     547 ..     502     549 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 6.7e-09
   EF-hand_7  6 eaFkelDtdgdgyldkee.llrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                e+F+++D d+ g+++k++ l+ +++       +g+  s +e ++ +k ++ d +G + +d++++l+
  CCD23291.1 23 ERFRSIDLDDKGWVEKQQaLE-AVQ------KTGEA-SYDEARETLKRVNVDASGHVELDDYVELI 80
                79****************666.999......67777.67899********************9975 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.32
   EF-hand_7  19 ldkeellrllrkifqga......gegsklsdeelellfkefDtdkdGvi 61 
                 +++ee +++ ++i+q        g + ++++    + f+ fD  kdG +
  CCD23291.1 139 INEEERREFTKHINQVLagdediGYMLPFPE----DTFQLFDECKDGLV 183
                 5666656666666666666666666666666....88999999999976 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.2
   EF-hand_7  27 llrkifqga.....gegsklsdeelellfk 51 
                 l+r++++++     ++g ++sd ++ ++ +
  CCD23291.1 518 LMRRNITNTmkhlsSTGRDMSDSQILKWAQ 547
                 556655555667779999999999999987 PP

>> CAMSAP_CH  CAMSAP CH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.027        98      15      44 ..     173     202 ..     165     244 .. 0.76
   2 !    4.9   0.0    0.0062        22       5      37 ..     304     336 ..     301     344 .. 0.86
   3 !   15.1   0.0   4.4e-06     0.016       7      54 ..     426     473 ..     421     507 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.027
   CAMSAP_CH  15 dllrdlsdGvaLaalihfYcPqlikledic 44 
                  l  + +dG+ L +li+   P++i+    +
  CCD23291.1 173 QLFDECKDGLVLSKLINDSVPDTIDTRVLN 202
                 5777899***************99875444 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0062
   CAMSAP_CH   5 rslplippvedllrdlsdGvaLaalihfYcPql 37 
                 +++ + + v+++ +d+sdG   + l++ + P+l
  CCD23291.1 304 KQANWGRRVTNFSKDVSDGENYTILLNQLAPTL 336
                 6788999************98888888888875 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 4.4e-06
   CAMSAP_CH   7 lplippvedllrdlsdGvaLaalihfYcPqliklediclkesmslads 54 
                 l+  ppv  l +dl+dG+ L +  +  +P+++++++++ k++  +++s
  CCD23291.1 426 LDVDPPVVSLFEDLKDGLILMQAYNKVMPNTVDFKHVNKKPTSGVELS 473
                 566689999*****************************8876544443 PP

>> CH_2  CH-like domain in sperm protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.89   3.2e+03      22      59 ..     179     215 ..     172     258 .. 0.58
   2 ?    4.0   0.0     0.015        54       5      40 ..     303     338 ..     295     353 .. 0.79
   3 !   12.0   0.0   4.7e-05      0.17       4      62 ..     422     480 ..     419     489 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.89
        CH_2  22 sdGvlvAeilkkyypklvdlhnysngsslaaklnNWet 59 
                  dG+++ ++++   p ++d    +   + +++lnN++ 
  CCD23291.1 179 KDGLVLSKLINDSVPDTIDTRVLN-MPKNNKRLNNFQA 215
                 577777777777777766665443.3344556666654 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.015
        CH_2   5 lqsldlsrsvknlkrdfsdGvlvAeilkkyypklvd 40 
                 l++ +  r+v+n+++d+sdG     +l+++ p+l++
  CCD23291.1 303 LKQANWGRRVTNFSKDVSDGENYTILLNQLAPTLCS 338
                 3447778999**********9999999999888765 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 4.7e-05
        CH_2   4 WlqsldlsrsvknlkrdfsdGvlvAeilkkyypklvdlhnysngsslaaklnNWetLek 62 
                 Wl+sld++ +v +l +d+ dG+++ +  +k+ p++vd+++ +++ +    l+ ++ Le 
  CCD23291.1 422 WLNSLDVDPPVVSLFEDLKDGLILMQAYNKVMPNTVDFKHVNKKPTSGVELSRFKALEN 480
                 ****************************************9999999999999998865 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.6   5.7e+03       5      15 ..      24      34 ..      22      44 .. 0.85
   2 ?    4.7   0.0    0.0071        25       1      29 []      55      83 ..      55      83 .. 0.89
   3 ?    3.9   0.0     0.013        47       4      17 ..     170     183 ..     169     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.6
                HHHHHTTTSSS CS
   EF-hand_1  5 iFrefDkDgdG 15
                 Fr +D D  G
  CCD23291.1 24 RFRSIDLDDKG 34
                69999999776 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0071
                HHHHHHHHHTTTSSSEEEHHHHHHHHHHH CS
   EF-hand_1  1 elkeiFrefDkDgdGkIdfeEfkellkkl 29
                e +e  + + +D +G++++++++el++kl
  CCD23291.1 55 EARETLKRVNVDASGHVELDDYVELIAKL 83
                56888899999*************99875 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.013
                 HHHHHHTTTSSSEE CS
   EF-hand_1   4 eiFrefDkDgdGkI 17 
                 + F++fD  +dG +
  CCD23291.1 170 DTFQLFDECKDGLV 183
                 78**********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4329.44
//
Query:       CCD23292.1  [L=318]
Description: hypothetical protein NDAI_0B02570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-10   41.5   0.9    1.3e-10   41.5   0.9    2.3  2  ANAPC9    Anaphase-promoting complex subunit 9
  ------ inclusion threshold ------
       0.15   10.6   5.4        2.2    6.8   0.0    2.4  2  SART-1    SART-1 family


Domain annotation for each model (and alignments):
>> ANAPC9  Anaphase-promoting complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.9   1.4e-14   1.3e-10      30     117 ..     106     201 ..      78     202 .. 0.88
   2 ?   -1.9   0.1      0.41   3.7e+03      19      19 ..     277     277 ..     242     312 .. 0.59

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.4e-14
      ANAPC9  30 fvlrkpaklskYDysvftnkktedeesllpaikeSqikawesaEriaqnliFdkd.................dsdkevdededeedsakeekekssliv 111
                    r++++  kYDy +f++k+          ++e +i++++ +E++ ++liF+k+                 d   ++++++ +e  ++ +    sli+
  CCD23292.1 106 SSHREEEEGYKYDYRPFIDKDL---------VQEHKINNLLRSEKAIHCLIFHKNghsnestsffmedsykpDLQLHCGDEDGDEIHDQAQYPAGSLIT 195
                 44567788889***********.........*************************************************88888799999999***** PP

      ANAPC9 112 siPGYt 117
                  iP+++
  CCD23292.1 196 RIPNCN 201
                 ****97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.41
      ANAPC9  19 k 19 
                 +
  CCD23292.1 277 Q 277
                 1 PP

>> SART-1  SART-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0   0.00024       2.2     571     598 ..     154     182 ..     149     185 .. 0.80
   2 ?    5.5   0.7   0.00059       5.3     343     417 ..     228     311 ..     215     316 .. 0.58

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00024
      SART-1 571 areaaeffek.dYkPdvklkYvDefGreL 598
                 ++e + ff + +YkPd +l   De+G e+
  CCD23292.1 154 SNESTSFFMEdSYKPDLQLHCGDEDGDEI 182
                 55666777777***************876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.00059
      SART-1 343 eedsfvDDde...LqaaLakqRraalkkr.kklrp..edvakqlkeereeeeeekeeeee.......gglvldetseFvrnlgeieek 417
                   d f DD++   L +a++ + r +l +  k++ +  ++++ q +++++++e + +e          ++++ de++  ++++ e++e+
  CCD23292.1 228 LRD-FWDDNDdtgLLSAIDSAHRVKLGEIfKRECElfQELQLQSQSQSQSQE-DGTE--VdigdafnQEITVDEIKRQCHEIYEEDEE 311
                 333.555444477**********88665544332233333333333333332.2222..0233445799*************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2275.50
//
Query:       CCD23293.1  [L=670]
Description: hypothetical protein NDAI_0B02580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-214  714.4   3.8   1.3e-214  714.2   3.8    1.0  1  CDC45           CDC45-like protein
     0.0013   18.9  12.1      0.002   18.3  12.1    1.2  1  YL1             YL1 nuclear protein
      0.002   18.2  24.3      0.002   18.2  24.3    2.3  2  Merozoite_SPAM  Merozoite surface protein (SPAM)
  ------ inclusion threshold ------
      0.021   14.6   5.4      0.044   13.6   5.4    1.5  1  SpoIIIAH        SpoIIIAH-like protein
       0.04   13.3  17.7      0.062   12.7  17.7    1.2  1  SDA1            SDA1
       0.04   12.9   4.0      0.071   12.1   4.0    1.3  1  DUF913          Domain of Unknown Function (DUF913)
      0.056   12.0   8.8      0.097   11.2   8.8    1.5  1  RRN3            RNA polymerase I specific transcription initi
      0.076   11.7   0.3        1.1    8.0   0.1    2.3  2  Folate_carrier  Reduced folate carrier
       0.12   11.7  15.9       0.17   11.2  15.9    1.2  1  BUD22           BUD22
       0.12   11.3  11.0       0.19   10.6  11.0    1.3  1  IFT57           Intra-flagellar transport protein 57
       0.18   10.0  20.0       0.25    9.5  20.0    1.2  1  Nop14           Nop14-like family
       0.19   11.1  14.3       0.29   10.5  14.3    1.2  1  Nop53           Nop53 (60S ribosomal biogenesis)
       0.68    9.6  10.4        2.5    7.8  10.4    2.0  1  FAM176          FAM176 family
       0.89    7.5   9.8        1.3    7.0   9.8    1.1  1  FRQ             Frequency clock protein
        1.3   10.0   8.6        4.5    8.2   8.6    1.9  1  GEN1_C          Holliday junction resolvase Gen1 C-terminal d
        7.5    5.8  16.6         12    5.2  16.6    1.2  1  CDC27           DNA polymerase subunit Cdc27


Domain annotation for each model (and alignments):
>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  714.2   3.8  1.1e-217  1.3e-214       1     635 [.      28     666 ..      28     667 .. 0.89

  Alignments for each domain:
  == domain 1  score: 714.2 bits;  conditional E-value: 1.1e-217
       CDC45   1 VlilvaldvDalCAariLtsLLkkdliphkivPVsGyedlekaleelveegeelrsvvllnlGalvdleellelee......................g 77 
                 V+++++l++D++CA+++L++L+kk+l++ +ivPV Gy++l+k +++l+ +   ++sv+l+++Ga+vdle++l+l++                      +
  CCD23293.1  28 VIFVSCLNIDSMCATKMLSNLFKKELVQLQIVPVFGYSELKKLYSQLDIN---INSVILVGFGAVVDLEAFLNLDNnnttdnnntpdnnnnnnnnnnsE 123
                 899***********************************************...**********************9*********************** PP

       CDC45  78 vevyViDshRPwnleNlfgsseekerivvfDDgdieeeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksd 176
                 + +yV+D+hRPwnl+Nlfgs+     i +fDDg++e++l++e+eay++l + ee++e+d+e++  +ddde++++++++dee++++de+e++        
  CCD23293.1 124 RLIYVLDAHRPWNLDNLFGSDI----IHCFDDGTVENNLQHEKEAYFKLVKLEEERENDSEDDGLSDDDEDDDDDDDDDEEQDQTDEDEDE-------- 210
                 ******************7765....***************************99865554444444444444443333333333332211........ PP

       CDC45 177 eeeesddddersrkrrrse..psakklrrqlkkerrkyeavlekyysqgtsygesvsslmYsLaselgredndlLWlAIvGltslelserisaeryerl 273
                     +++ d+++rk++ s+  + +kkl  q++k  ++ye+ le+yys+g+++++s+s+++YsL+s++g+++ ++LWl+I+G+tsl++ +++    y+rl
  CCD23293.1 211 ----ESNIDSKKRKKSSSNnnNPRKKLIIQRRKDINTYERFLEEYYSNGSTIVNSISTQIYSLLSSIGETNIQNLWLTILGATSLDTAYSQ---VYNRL 302
                 ....12222222222222211233344455999*********************************************************9...***** PP

       CDC45 274 rallrdeVrrlnpssktekietkarspddtsirlseelrllLlRhWsLydSmlhssYvaskLklWsekGrkrLhkLLAkmGvsLaqakqkYthmdlelk 372
                  +ll+deV+rl+ps   +++  ++++pd+ s++++++++l+LlRh+sLydS+++s+Yv++kL+lW+e+GrkrLhk++A+mG++L++a++++ +md+++k
  CCD23293.1 303 FPLLQDEVKRLSPS---NNSMISTKTPDTLSLEVQPDYYLFLLRHSSLYDSFYYSNYVNAKLSLWNENGRKRLHKMFARMGIPLTTAQESWLYMDHSIK 398
                 *************8...56778889************************************************************************** PP

       CDC45 373 reLreklekiapeygLddlvyesFvrsygyraelsAaDvvealtAlLevgkgve.....aksekeaeesekese......eeeeeeeeeeaeeeekeee 460
                 reL   ++k++++ygL+d+v+++Fvr++gyr+++sA+++vealtAlLe+g ++       +s+++a+             e+ ++++ + ++  + +++
  CCD23293.1 399 RELGIIFDKNLDRYGLQDIVRDGFVRTFGYRGSISASEFVEALTALLEMGGSILkdgrvVSSSNNAN------YdvpldeEDIQDNDGNVSQLLNLTRR 491
                 ***************************************************8842333333333333......23445547888899999999****** PP

       CDC45 461 ewvknFweAydaLdkknidlLkkglelaqslqraivrtgtsliekkqirtlrafrlavlkdgpdlelFthpaaLtkLalwllealresekekkkkkkkl 559
                 +wv+nFw ++daLd+++++lL++g+++aq lq+++++t + ++ekk+i++lr +rl+vl+dgpdlel+++p +L +L++wl+e+++ese+++      l
  CCD23293.1 492 QWVSNFWLSWDALDDRKFELLNRGIQHAQMLQKSVFNTSVIILEKKLIKHLRIYRLCVLQDGPDLELYRNPLTLLRLGNWLIECCAESEDKQ------L 584
                 ******************************************************************************************96......9 PP

       CDC45 560 lPlVlasldeergtylVvGvtgkaasggdve......kNrFglaFqevaeetgarvridsFessvievrkeDlakFlekLsl 635
                 lP+Vlaslde+++tylV G+++++++g d+        N+F++aFq++++etga+v+id+Fess+ie+rk+Dl++FlekL+l
  CCD23293.1 585 LPMVLASLDESTDTYLVAGLSPRYPRGLDTIntrkpiLNNFSMAFQQITAETGAKVKIDNFESSIIEIRKDDLSPFLEKLTL 666
                 ***************************9987999**********************************************97 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3  12.1   1.8e-06     0.002      29     104 ..     173     240 ..     153     298 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  29 aEeedDeefeseeeeeeeensDsdfdsdeedeesdeeedeeegekelerqerkkrkkekkkrkaqkkkskkkkkkq 104
                 +E e+D e  + ++++e+  +D   d+d++dee+d+ +++e++e +++ ++rkk    +  +++++kk  ++++k+
  CCD23293.1 173 EERENDSEDDGLSDDDED--DD---DDDDDDEEQDQTDEDEDEESNIDSKKRKKS---SSNNNNPRKKLIIQRRKD 240
                 233333333332222222..22...334444456677777777777777777777...344445555555555444 PP

>> Merozoite_SPAM  Merozoite surface protein (SPAM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   2.8      0.73   8.2e+02     108     134 ..     102     126 ..      93     137 .. 0.55
   2 !   18.2  24.3   1.8e-06     0.002      43     163 ..     153     277 ..     142     281 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.73
  Merozoite_SPAM 108 qsnentdtsekkqkldsekDekaqnLI 134
                     +  +n++    ++ +++++ ++ + LI
      CCD23293.1 102 NTTDNNN--TPDNNNNNNNNNNSERLI 126
                     1122221..234445555555555555 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.8e-06
  Merozoite_SPAM  43 vveeeeeed.........leekedeeeEteeeeteekneeeieeetedeedEeeveEeeekeeeedkkkekeeeqsnentdtsekkqkldsekDe 128
                     +ve++ + +         l      eeE e++ +++   ++ e++ +d++d+ee+   +e e+ee + ++k++++s  n+++ +kk + +  kD+
      CCD23293.1 153 TVENNLQHEkeayfklvkL------EEERENDSEDDGLSDDDEDDDDDDDDDEEQDQTDEDEDEESNIDSKKRKKSSSNNNNPRKKLIIQRRKDI 241
                     5555555542333322212......233332222222222222233333333445555666666666667777777777767799********** PP

  Merozoite_SPAM 129 kaqnLIskeykdneks.kkaaetlvntlisLleekN 163
                     + ++   +ey  n  +   ++ t + +l+s + e N
      CCD23293.1 242 NTYERFLEEYYSNGSTiVNSISTQIYSLLSSIGETN 277
                     *99999999888877657777777777777666665 PP

>> SpoIIIAH  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   5.4   3.9e-05     0.044       9     100 ..      86     226 ..      79     255 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.9e-05
                 XXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX.................................................XXXXXXXXXXX CS
    SpoIIIAH   9 LalmiavagYlnftedsgkkaaetaeteqeesekaeigd.................................................dkekdessaas 58 
                    ++ + ++ln  +++++++++t +++++++++++ +                                                  + e+d+++++ 
  CCD23293.1  86 FGAVVDLEAFLNLDNNNTTDNNNTPDNNNNNNNNNNSERliyvldahrpwnldnlfgsdiihcfddgtvennlqhekeayfklvkleeERENDSEDDGL 184
                 55566677899999999888888888888888888888899******************************************9998766667777777 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXX- CS
    SpoIIIAH  59 aeaesssetesesseksdiassdedeadeltsetasaaasas 100
                 ++++++ +++++++e++d++ +dede++++ s++ ++++s++
  CCD23293.1 185 SDDDEDDDDDDDDDEEQDQTDEDEDEESNIDSKKRKKSSSNN 226
                 777777777777777788877777777664444444333333 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7  17.7   5.5e-05     0.062     122     189 ..     157     230 ..      96     248 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.5e-05
        SDA1 122 dvesdee........eieesdesedeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekkkkkakeaseee 189
                 + ++++e        e+e +++sed+  ++++e+++++++++ee++  +++e+e+ee++ +++k+kk+++++++ +
  CCD23293.1 157 NLQHEKEayfklvklEEERENDSEDDGLSDDDEDDDDDDDDDEEQD--QTDEDEDEESNIDSKKRKKSSSNNNNPR 230
                 3444444666666663333444666666666666666666666655..4444444444444444444333333222 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.0   6.3e-05     0.071     269     349 ..     176     263 ..     148     276 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.3e-05
      DUF913 269 sskseasssssssetkeeek...ssededvemedaeeetesesdeseeseeekekns....lldyilnvakFLeallsnnslcreFve 349
                 +++se ++ s ++e++ ++    +++d+ +e+ed+e++ +s+++++++s++++++++      + i+   +FLe + sn s+  + ++
  CCD23293.1 176 ENDSEDDGLSDDDEDDDDDDdddEEQDQTDEDEDEESNIDSKKRKKSSSNNNNPRKKliiqRRKDINTYERFLEEYYSNGSTIVNSIS 263
                 2222222222221111111121222222233344444444555444455444444446555567799************998765555 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   8.8   8.7e-05     0.097     218     274 ..     172     225 ..     149     319 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.7e-05
        RRN3 218 e.dldde.edeeleeeleededdedddeddeesdlddlssdeeaeedee.kdeeeeslkk 274
                 e + +++ ed+ l+++   dedd+ddd+ddee+d++d+++dee + d++ ++   +s ++
  CCD23293.1 172 EeERENDsEDDGLSDD---DEDDDDDDDDDEEQDQTDEDEDEESNIDSKkRK---KSSSN 225
                 3122222022222211...223333333333333333333333333332111...22222 PP

>> Folate_carrier  Reduced folate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.11   1.2e+02      37      58 ..      49      70 ..      39      74 .. 0.82
   2 ?    8.0   0.1   0.00095       1.1     196     287 ..     205     296 ..     159     308 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.11
  Folate_carrier 37 lteeqvnnevyPvltYSylall 58
                    + +e v+ +++Pv +YS l  l
      CCD23293.1 49 FKKELVQLQIVPVFGYSELKKL 70
                    56777889*********99877 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00095
  Folate_carrier 196 askkdekseeeseeseeeenekeeeeeksseesekkvlklllkelkeaysnkkllqwslwwalatagylqvvnYvqvlwkev.etseeasvyn 287
                     +  +de+ ++  +++ +++++++++ +k+ + +++k ++ + + l+e ysn   ++ s+   + +       + +q+lw ++  +++  ++y 
      CCD23293.1 205 DEDEDEE-SNIDSKKRKKSSSNNNNPRKKLIIQRRKDINTYERFLEEYYSNGSTIVNSISTQIYSLLSSIGETNIQNLWLTIlGATSLDTAYS 296
                     2222222.33333555555666777788899999999**************999998875555555555555556666666654444444443 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  15.9   0.00016      0.17     204     264 ..     124     229 ..      87     250 .. 0.39

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
       BUD22 204 e................................................deedeeaeerelaqydgllasddededeyneetdeesseesdssdssesa 254
                 +                                                +e+++++e++ l++ d+   +dd+d+d+++e+++ +++e+++s+ +s++ 
  CCD23293.1 124 RliyvldahrpwnldnlfgsdiihcfddgtvennlqhekeayfklvkleEERENDSEDDGLSDDDE---DDDDDDDDDEEQDQTDEDEDEESNIDSKKR 219
                 133333344444444444444444444444444444444455544333222222233333333322...111111111111111112222222222222 PP

       BUD22 255 sesesessek 264
                 ++s+s+++++
  CCD23293.1 220 KKSSSNNNNP 229
                 2222222222 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  11.0   0.00017      0.19     112     198 ..     155     242 ..     105     251 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
       IFT57 112 deaLkkk.kfkfkkpkypkeeeeeeeeev.eddaelelekveeeelikseeededeedeeeelklesekkeekekekeeeiieskvdaa 198
                 ++ L+++ +  fk +k ++e e+++e++   dd e+++++ +++e  ++++ededee +  + k ++++++++++ +++ ii+   d +
  CCD23293.1 155 ENNLQHEkEAYFKLVKLEEERENDSEDDGlSDDDEDDDDDDDDDEEQDQTDEDEDEESN-IDSKKRKKSSSNNNNPRKKLIIQRRKDIN 242
                 45555441556788888877777777777766667777776666665444333333333.44445555555566777777777766655 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  20.0   0.00022      0.25     344     407 ..     171     225 ..      99     260 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00022
       Nop14 344 aeee.eeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeee 407
                  eee e++ edd  +ddd+++++++       +d+ee+++ +e+e+ee++ d+++++   +++++
  CCD23293.1 171 LEEErENDSEDDGLSDDDEDDDDDD-------DDDEEQDQTDEDEDEESNIDSKKRK---KSSSN 225
                 1111123333333333311111111.......1111111111111111111111111...11111 PP

>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  14.3   0.00026      0.29     216     292 ..     156     239 ..     153     252 .. 0.40

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00026
       Nop53 216 eklerkrekiaekaataeareeelseekdegleeeeeeeeeeeeeeeeeeeesee...........eeklnapvkkkpkrKTkaqRnk 292
                 + l+ ++e+ ++  + +e+re++  +e+d gl++++e +++++++++ee+++ +e           + k +  ++++p++K   qR+k
  CCD23293.1 156 NNLQHEKEAYFKLVKLEEEREND--SEDD-GLSDDDE-DDDDDDDDDEEQDQTDEdedeesnidskKRKKSSSNNNNPRKKLIIQRRK 239
                 55666666666655555555542..2222.2222222.22222222222222222121112223332222223344445555555555 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  10.4    0.0022       2.5      59     131 ..     179     256 ..     156     267 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0022
      FAM176  59 kklkeesekasededeeeeeeeedsseseaeeel..sefertl.svnvftsa..eelerAqRlEeReriirEIWrngq 131
                 ++ +  s+++++d+d+++++ee+d+++++++ee   ++ +r+  s n  +      ++r + +   er + E + ng 
  CCD23293.1 179 SEDDGLSDDDEDDDDDDDDDEEQDQTDEDEDEESniDSKKRKKsSSNNNNPRkkLIIQRRKDINTYERFLEEYYSNGS 256
                 222222222233333333333333333333322234333333313333222200345666667788888888887776 PP

>> FRQ  Frequency clock protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.8    0.0011       1.3     873     933 ..     162     222 ..     141     259 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0011
         FRQ 873 seelvsrranphqsdgYpdkvdlssgdeegeepddddeakekeeedssdekklprlprear 933
                 +e+  +  + +++ ++  +++ ls +de++++ dddde++++++ed+++e++++ ++r++ 
  CCD23293.1 162 KEAYFKLVKLEEERENDSEDDGLSDDDEDDDDDDDDDEEQDQTDEDEDEESNIDSKKRKKS 222
                 3444444556667777889999***************999999998888888776654443 PP

>> GEN1_C  Holliday junction resolvase Gen1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   8.6     0.004       4.5      28      70 ..     167     221 ..     147     235 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.004
      GEN1_C  28 qlVaidlsgeegkreepagreglaededdedeeee............eeasakkk 70 
                 +lV++ +++e++++++  ++++++ d+dd+d+ee+             +++++kk
  CCD23293.1 167 KLVKLEEERENDSEDDGLSDDDEDDDDDDDDDEEQdqtdededeesnIDSKKRKK 221
                 5788888888888886655555555555555554445555443222222222222 PP

>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  16.6      0.01        12     234     302 ..     172     243 ..     153     247 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.01
       CDC27 234 akeqkveee....seeekekedkeleddsa..aeeeeeeekstkkekrrqkklessdeeeeerekekekrkrlkk 302
                 ++e +  +e    s++ + ++d++ +d+++  ++e+e+ee  +++   +++k+ ss++++++++   ++rk++  
  CCD23293.1 172 EEERENDSEddglSDDDEDDDDDDDDDEEQdqTDEDEDEESNIDS---KKRKKSSSNNNNPRKKLIIQRRKDINT 243
                 222222222224344444333333333333345666666666666...444445566677777888999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1681  (0.0937587); expected 358.6 (0.02)
Passed bias filter:                      679  (0.0378716); expected 358.6 (0.02)
Passed Vit filter:                       158  (0.00881254); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.91u 0.33s 00:00:01.24 Elapsed: 00:00:00.46
# Mc/sec: 4403.69
//
Query:       CCD23294.1  [L=164]
Description: hypothetical protein NDAI_0B02590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-25   87.7   0.8    6.6e-25   86.9   0.8    1.4  1  Sdh5      Flavinator of succinate dehydrogenase


Domain annotation for each model (and alignments):
>> Sdh5  Flavinator of succinate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.8   3.7e-29   6.6e-25       1      73 []      69     144 ..      69     144 .. 0.97

  Alignments for each domain:
  == domain 1  score: 86.9 bits;  conditional E-value: 3.7e-29
                 HHHHHHHH.--SSHHHHHTTTTHHHHHTTT--HHHHHHHHHHHTS--HHHHHHHHT-....---S-HHHHHHHHHH CS
        Sdh5   1 raRllyrsrrRGmlElDllLgrFaekhlatlseeeldaferLLdleDpdLldwltgr...keepedaelaallekl 73 
                 r+Rl+y+sr+RG+lE+DllL+ Fa+k+l++++  el+++++LL++ D+d+++w+t++   ++ p++++++++l+kl
  CCD23294.1  69 RSRLIYQSRKRGILETDLLLSAFAAKYLKDMDVVELKEYDELLNELDWDIYYWATKNfdySPLPKKWNDSKVLKKL 144
                 78******************************************************99999999*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1408.38
//
Query:       CCD23295.1  [L=487]
Description: hypothetical protein NDAI_0B02600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-07   29.8   0.0    2.4e-06   28.0   0.0    2.1  1  PCI       PCI domain


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.4e-10   2.4e-06       3     105 .]     321     457 ..     319     457 .. 0.95

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1.4e-10
                 HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHH.HHHHHHHHHHHHHHHHHHH......CESEEEHHHHHHHHTSSH.................... CS
         PCI   3 ysdllkalrsgnlsgfseelkdleeelladdglaq.llesLekkvrerllrqvsk......iyssislerlaklldlsv.................... 74 
                 y+ l   +++gn+sg   +lk + e+ll++++++  lle+L   +++ l++ v+         +++ +e + +++ +s                     
  CCD23295.1 321 YKKLCHNITTGNMSGLHGWLKLH-EKLLRRQYVHLiLLEKLPILTYRFLIKNVISkfviseGSNKLLYELVHRAIWVSLnlsddngsidnsmgkkitiy 418
                 6777888999*************.**********999*****************99**9999999999999999888888888**************** PP

                 ........HHHHHHHHHHHHTTSSSEEEETTTTEEEECS CS
         PCI  75 ........devEkilvklIrdgeirakidqesgivvfkk 105
                          ++E+ilv+lI+ g++r+++++  +++vf+k
  CCD23295.1 419 dgihtgtlADTENILVTLINLGFLRGNCFPLLKLCVFQK 457
                 ************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3752.19
//
Query:       CCD23296.1  [L=441]
Description: hypothetical protein NDAI_0B02610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-28   99.4   1.0    2.2e-28   99.4   1.0    3.8  3  Smg4_UPF3        Smg-4/UPF3 family
  ------ inclusion threshold ------
        8.2    6.8  24.5        1.4    9.3   9.3    2.4  2  Dsh_C            Segment polarity protein dishevelled (Dsh) C


Domain annotation for each model (and alignments):
>> Smg4_UPF3  Smg-4/UPF3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   8.9         2   1.8e+04     124     148 ..      77     101 ..      37     111 .. 0.52
   2 !   99.4   1.0   2.5e-32   2.2e-28       3     132 ..     111     257 ..     109     296 .. 0.82
   3 ?  -10.5  15.5         2   1.8e+04     138     163 ..     313     337 ..     298     418 .. 0.66

  Alignments for each domain:
  == domain 1  score: -5.3 bits;  conditional E-value: 2
   Smg4_UPF3 124 eslekeeeekeseseeeklaeeaee 148
                 +  +k++++++++++++++++++++
  CCD23296.1  77 KGSNKPAKKRATQQQQKQQKRQKQR 101
                 3333333333222222222222111 PP

  == domain 2  score: 99.4 bits;  conditional E-value: 2.5e-32
   Smg4_UPF3   3 ktKvviRrLPPnLteeefleavsd.kplpetvdykyFvpGklskdslkeskysrayinfkdpedlvqfakkfdghvFvDskgnespaivefApyqkv.. 98 
                  +K+v+R+LPPnL  e+f++ vs  k+++  +  +y+++G++s++ +k++ ysray+ f++  +l +fa+ +++++F+D+++n +++ + ++ y k   
  CCD23296.1 111 LFKLVLRHLPPNLNSENFIKNVSLsKNIHDLYLEWYYIQGHYSSKLFKQPHYSRAYFIFDSIVKLNKFASIVKNMKFIDDHENVMIPLLTLSSYIKSie 209
                 58*********************5588999999***************************************************************998 PP

   Smg4_UPF3  99 ......pkkk..........kkkkdakqgtIekDpeylaFleslekeeee 132
                          +          + kkd  +gtIe+D  ++ Fl + +++++ 
  CCD23296.1 210 envperS--RnnpkkhqrtkAPKKDILEGTIENDDLFKMFLGRSKENDKV 257
                 8886550..1455566888899*******************999955543 PP

  == domain 3  score: -10.5 bits;  conditional E-value: 2
   Smg4_UPF3 138 eeeklaeeaeekekekeakkekkttt 163
                 +++k+++++++++k++ ++k +k tt
  CCD23296.1 313 NKDKNKDKISKENKKE-KQKGAKATT 337
                 2222222222222221.222222222 PP

>> Dsh_C  Segment polarity protein dishevelled (Dsh) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   7.3     0.012   1.1e+02      56     144 ..      17     106 ..       3     135 .. 0.43
   2 ?    9.3   9.3   0.00015       1.4      63     140 ..     294     375 ..     280     430 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.012
       Dsh_C  56 yeessysygsgsagsqhsegsrssgsnrsegkakreas.keekerkaggsgsesesstrssvsrrerekaqserssaaaserskrssklr 144
                   ++  +  + +ag    +g+  +  nr ++ ++r+++  +    k + s+++se++t+ + s++  +k +++++++++ ++ +r+++ r
  CCD23296.1  17 PRQQQPTGTTVAAGNTSTDGTAINPRNRRRRPKSRNKQtIDTVPDKEANSTAKSENATHLKGSNKPAKKRATQQQQKQQKRQKQRQKQDR 106
                 333333333344444444555554444443333222220223333344666666655554433332222222222222222222221222 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00015
       Dsh_C  63 ygsgsagsqhsegsrssgsnrsegkakreaskeekerkag....gsgsesesstrssvsrrerekaqserssaaaserskrs 140
                  ++gsa+s +   s+++ +n+ ++k+k +++++++++k++    g++   ++s rs+ ++++ ++++++ +s + + +s++ 
  CCD23296.1 294 LAGGSASSTKDVTSQAKNANKDKNKDKISKENKKEKQKGAkattGTTEGKKKSRRSKKKKKNVPATNTNMGSGNLTFESSTD 375
                 579************9999998888654444333333333343333333344444555555556666666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2922  (0.162976); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                       148  (0.00825478); expected 17.9 (0.001)
Passed Fwd filter:                        66  (0.00368119); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.18u 0.31s 00:00:01.49 Elapsed: 00:00:00.51
# Mc/sec: 2617.48
//
Query:       CCD23297.1  [L=153]
Description: hypothetical protein NDAI_0B02620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-22   77.3   0.1      1e-21   76.4   0.1    1.5  1  LSM       LSM domain
     0.0038   17.3   0.1     0.0064   16.6   0.1    1.6  1  SM-ATX    Ataxin 2 SM domain
  ------ inclusion threshold ------
      0.097   12.8   0.2       0.28   11.3   0.2    1.7  1  LSM14     Scd6-like Sm domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.1   1.7e-25     1e-21       1      67 []       5     104 ..       5     104 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.7e-25
                 HHHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET.................................EEEEEEEEEEEGGGEEEEE CS
         LSM   1 kflkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk.................................ekrklglvliRGnnivlis 66 
                 +flkkl+n++vt+elkng++++GtL+ ++++mN  L+dv+  l+ +                                  ++++l++++iRGn+i++i+
  CCD23297.1   5 NFLKKLRNEQVTIELKNGTTVWGTLQTVSPQMNTTLTDVKLSLPRNAsqgisagsvaiasvyltngtsgtsnnnptgiesSTTSLQYINIRGNTIRQII 103
                 79*****************************************9999***************************************************8 PP

                 E CS
         LSM  67 l 67 
                 l
  CCD23297.1 104 L 104
                 5 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   1.1e-06    0.0064       4      53 ..       3      49 ..       1     104 [. 0.80

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-06
                -HHHHHTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS.. CS
      SM-ATX  4 llflltslvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkkan 53
                l+ +l++l  ++v++++knG +  G ++tvs+  +++ +L  +++  + +
  CCD23297.1  3 LVNFLKKLRNEQVTIELKNGTTVWGTLQTVSP--QMNTTLTDVKLSLP-R 49
                677777777789********************..66666666665554.2 PP

>> LSM14  Scd6-like Sm domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   4.7e-05      0.28       7      70 ..      15     102 ..       6     106 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.7e-05
       LSM14   7 islisksdirYeGilceinledstiaLqn.......................vrsfGteg.rkdneq.ippskevyeyivFrgsDikdL 70 
                 + ++ k++    G+l +++++ +t +L++                          +Gt g  ++n+  i+ s++  +yi  rg+ i+++
  CCD23297.1  15 VTIELKNGTTVWGTLQTVSPQMNT-TLTDvklslprnasqgisagsvaiasvYLTNGTSGtSNNNPTgIESSTTSLQYINIRGNTIRQI 102
                 444444444444555555544333.3444777778888888888888888866789***965566669*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       682  (0.0380389); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1123.67
//
Query:       CCD23298.1  [L=614]
Description: hypothetical protein NDAI_0B02630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4419.60
//
Query:       CCD23299.1  [L=333]
Description: hypothetical protein NDAI_0B02640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       957  (0.0533772); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2521.45
//
Query:       CCD23300.1  [L=929]
Description: hypothetical protein NDAI_0B02650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-49  166.7   6.6    1.1e-48  165.1   5.1    2.5  2  E1-E2_ATPase     E1-E2 ATPase
    8.4e-19   68.7   1.9    8.4e-19   68.7   0.1    2.0  3  Hydrolase        haloacid dehalogenase-like hydrolase
    3.2e-10   39.6   0.0    3.2e-10   39.6   0.0    2.2  3  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    0.00011   22.2   0.1    0.00023   21.2   0.1    1.4  1  Cation_ATPase    Cation transport ATPase (P-type)
     0.0047   16.7   0.1     0.0047   16.7   0.1    2.1  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.099   12.3   0.0        6.1    6.5   0.0    2.6  2  UreE_N           UreE urease accessory protein, N-terminal do


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1   5.1   3.8e-52   1.1e-48       2     181 .]     185     366 ..     184     366 .. 0.98
   2 ?   -1.1   0.0      0.39   1.2e+03      53      78 ..     565     590 ..     554     594 .. 0.87

  Alignments for each domain:
  == domain 1  score: 165.1 bits;  conditional E-value: 3.8e-52
                   SS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S..EEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTT CS
  E1-E2_ATPase   2 llpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa..evdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgk 96 
                   +l++ta+virdg+++ei+a+e+vpGDi++l  g ++paDgriv + +  ++d+sa+TGEsl+v+k++gd+ fs+++v++g+a ++V+atg +t++g+
    CCD23300.1 185 TLANTATVIRDGNLVEIPANEVVPGDILQLDDGTIIPADGRIVTEDTfvQIDQSAITGESLAVDKHYGDQTFSSSTVKRGNAFMIVVATGDNTFVGR 281
                   5789********************************************************************************************* PP

                   TSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase  97 iarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlakk 181
                   +a+lv++a+  + ++++ l+ +g +l ++v++ +l+v+ + ++++++++++l ++l++ ++ +P +Lp++v++++a+ga+ lakk
    CCD23300.1 282 AASLVNKASGGQGHFTEVLNGIGIILLVLVIITLLVVWTASFYRTDGIVTILRFTLGITIVGVPVGLPAVVTTTMAVGAAYLAKK 366
                   ***********************************************9999999*****************************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.39
                   TTTS---S-EE-G-TTEE-TT-EEEE CS
  E1-E2_ATPase  53 saLTGEslpvekekgdmvfsGtvvvs 78 
                    +LTG+++ + ke+  ++  Gt++ +
    CCD23300.1 565 KMLTGDAVGIAKETCRQLGLGTNIYN 590
                   69***********9999999999876 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       4.4   1.3e+04      83     109 ..      49      75 ..      30      90 .. 0.61
   2 ?   -4.1   0.0       5.5   1.7e+04     137     155 ..     269     286 ..     260     299 .. 0.68
   3 !   68.7   0.1   2.8e-22   8.4e-19       3     210 .]     384     656 ..     382     656 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.4
                 HHHHHHHHHHHHHHCHHHHHHTTHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  83 ppdlgaaigsaqsqgrtvallqarala 109
                 ++d +a i+++qs+ + ++ ++a++ +
  CCD23300.1  49 EEDIDALIDELQSDNEGQYDEEAEENE 75 
                 456667777777766666666444333 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5.5
                 EEEEESSEHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxx RF
   Hydrolase 137 vvlltgdnpetaeraanql 155
                 +v++tgdn  ++ raa+ +
  CCD23300.1 269 IVVATGDNT-FVGRAASLV 286
                 799999997.444455544 PP

  == domain 3  score: 68.7 bits;  conditional E-value: 2.8e-22
                 EEEEESBTTTBCHH.....HHHHHHHHHH....CHHHHHHHHHH.................HHCHHHHHHHHHHHHH........HHHHHHHHHETTTE CS
                 xxxxxxxxxxxxxx.....xxxxxxxxxx....xxxxxxxxxxx.................xxxxxxxxxxxxxxxx........xxxxxxxxxxxxxx RF
   Hydrolase   3 tvvfDkdGTLttge.....psvedvivsa....alalaaaletg.................sehpigkalvaaakar........sgaltgfatfigrg 67 
                  ++ Dk+GTLt+ +     p     +v+     +l l a l+ +                 ++ p +k+   ++k +        s ++t + + +++g
  CCD23300.1 384 ILCSDKTGTLTKNKlslheP----YTVEGvsasDLMLTACLAASrkkkgldaidkaflkslADYPEAKNALSKYKVLefypfdpvSKKVTAVVE-TEEG 477
                 6899*******999633333....4444444444555555555555555555555666666788888888777777788888777666655555.2333 PP

                 ...HHHHTHHHHHHHH.........HCHHHHHHHHHHHHHHCHHHHHH.......TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHH CS
                 ...xxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  68 ...ayaigkpewltal.........dippdlgaaigsaqsqgrtvall.......qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpet 147
                    +  +g p ++ +          +i++++++++ ++ s+g  +  +         ++ +v    dp  ++ ++a++va+ +  g++v +ltgd    
  CCD23300.1 478 etiVCVKGAPLFVLKTveqdhpipeEIHENYENKVAELASRGFRALGVarkrgegHWEIMGVMPCMDP--PRNDTAQTVAEARTLGLRVKMLTGDAVGI 574
                 5798888888888888888887788888889999999999999988887776655559**********..***************************** PP

                 HHHHHHHTT..GGGE.SEEEEHHCES................STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxx..xxxx.xxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 148 aeraanqlG..ddyf.daviasdiet................vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 a+++ +qlG   +++ + +++  + +                +a++ p++k ++++ Lq ++  vam GDgvnDa+ l++A+
  CCD23300.1 575 AKETCRQLGlgTNIYnAEKLGLGDGGdmpgseladfvenadgFAEVFPQHKYRVVEILQNRGYLVAMTGDGVNDAPSLKKAD 656
                 *********9944442333333333366667777777789*******************99999****************98 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.4       1.4   4.3e+03       3      29 ..      49      74 ..      47      77 .. 0.80
   2 !   39.6   0.0   1.1e-13   3.2e-10      12      69 .]      89     145 ..      87     145 .. 0.96
   3 ?   -3.5   0.4         3   8.8e+03      55      68 ..     300     313 ..     297     314 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.4
  Cation_ATPase_N  3 alsleevlekLetdlenGLtqaeaaer 29
                     + ++++++++L+ ++ +G  ++ea+e+
       CCD23300.1 49 EEDIDALIDELQ-SDNEGQYDEEAEEN 74
                     5688999****9.88899888888876 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 1.1e-13
  Cation_ATPase_N  12 kLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69 
                       L+t++e GLt++e+ +r+kkyG N++  ++ ++l+vk+l  f  p+  ++++aa+++
       CCD23300.1  89 MLQTNPEIGLTSDEVLKRRKKYGLNQM-SEESENLIVKFLMFFVGPIQFVMEAAAILA 145
                      599************************.9**************************985 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3
  Cation_ATPase_N  55 tnplvilLlvaalv 68 
                       n + i+Llv++++
       CCD23300.1 300 LNGIGIILLVLVII 313
                      6777899**99987 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   7.7e-08   0.00023      22      87 ..     430     493 ..     418     496 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 7.7e-08
  Cation_ATPase  22 nktEsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkr 87 
                    ++ + A l+  ++   + +++ +++k ++ +pF+ + K  + v+++ +e++ ++ vKGAp  +lk 
     CCD23300.1 430 DAIDKAFLKSLADY-PEAKNALSKYKVLEFYPFDPVSKKVTAVVET-EEGETIVCVKGAPLFVLKT 493
                    56678888888888.888999999****************999998.6************999986 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.8       1.8   5.4e+03     124     165 ..      22      63 ..       4      76 .. 0.53
   2 !   16.7   0.1   1.6e-06    0.0047     206     243 ..     639     676 ..     626     688 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.8
                  HCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHC CS
  Hydrolase_3 124 tkkkkeeidseeeledeeiakililkdkekldelekelkskl 165
                    ++ +++++e ++e+ +++     +++e++d l++el+s++
   CCD23300.1  22 PVSQTTQVKKEIKNEKPPVNSDEEEEEEEDIDALIDELQSDN 63 
                  333444444444444434444445555555555555555554 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.6e-06
                  EEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE CS
  Hydrolase_3 206 viafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvt 243
                  v+  GDg ND + L++a++g+A++ a++ + +aAd v 
   CCD23300.1 639 VAMTGDGVNDAPSLKKADTGIAVEGATDAARSAADIVF 676
                  6778*******************************997 PP

>> UreE_N  UreE urease accessory protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.03        88      13      29 ..      93     109 ..      85     114 .. 0.84
   2 ?    6.5   0.0     0.002       6.1      50      62 .]     208     220 ..     201     220 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.03
                 EEEEEE-GGGTT-SEEE CS
      UreE_N  13 adtvtLtweerqkrRlr 29 
                   ++ Lt++e +krR++
  CCD23300.1  93 NPEIGLTSDEVLKRRKK 109
                 56899**********97 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.002
                 TTBEEEEETTEEE CS
      UreE_N  50 dGDiLvaddgrlv 62 
                 +GDiL++ddg+++
  CCD23300.1 208 PGDILQLDDGTII 220
                 7*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (929 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1161  (0.0647554); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 6044.57
//
Query:       CCD23301.1  [L=590]
Description: hypothetical protein NDAI_0B02660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-16   58.8  29.4    4.5e-16   58.6  25.7    2.0  2  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
        0.8    9.6   4.4        1.2    9.1   0.0    3.4  4  UPF0139         Uncharacterised protein family (UPF0139)


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6  25.7   5.1e-20   4.5e-16       8     339 ..      78     407 ..      71     455 .. 0.80
   2 ?    1.4   0.1     0.012   1.1e+02     389     440 .]     509     551 ..     484     559 .. 0.61

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 5.1e-20
  Transp_cyt_pur   8 twktlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvviaivwf 101
                     t + l ++  Wl+a  +++  +   lg l + L ++q++ + +++ +ig  + a  +++G++ G ++++++R++fG ++  + +l+ ++  ++w 
      CCD23301.1  78 TKQFLHVAGYWLSATGSLSSMSSFLLGpLLFELTFKQTMCSGMISMVIGCLVAAYCSIMGPQSGCRQMVTARYLFGWWFVKFVALVAIIGVMGWS 172
                     555666777899999999988888888799********************************************************888899999 PP

  Transp_cyt_pur 102 gvqawiGsealllmlgkifgkwleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegGpvldkavk 196
                      v+ ++G+e+l+++ +  ++  +++g  ++ t+  +lv++f+   v  v+ +l+++ ++ f+   +++  + ++ +l+   ++a++ + ++k+ +
      CCD23301.1 173 VVNSVVGGEMLASISNDKVP--SWVG-IVIVTACSFLVAVFGIKQVLRVETFLSIPVLTCFTL--LYISSSDKYHMLSDF-QNATLNKDTLKGNW 261
                     9999******9999999988..8888.667777778888999999999999999998887754..566777777777754.44555577777777 PP

  Transp_cyt_pur 197 lgkselflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdet.......... 281
                     l+    f s  +++ a + ++ +   D+    ++ + +  +++++++++++++l++g l++ +a++a   + w+ +   +k+             
      CCD23301.1 262 LS----FFSLCYSITATWGSITA---DYYILFPEDTLKFQVFVLTFFGTAVPTLFVGTLGVCLATVAATYEPWDDS--YKKYGMGgllhsgfkrw 347
                     77....77777777777777777...**************************************999888888877..56666668899999999 PP

  Transp_cyt_pur 282 ..agvllililvalaqlgvnisanllsagl..dlaallPkkinikrgsliaavialvivpwk 339
                       +g +   ++v++  l+ n+  n++sa++  +l+ +   k+++   s+ + v+ lv++++ 
      CCD23301.1 348 ngFGKF--CVVVLILSLVSNNIINTYSAAFsvQLSSVRAAKVPRWFWSICCTVVYLVCALVG 407
                     555555..555666667777777777776622667788899999999999999999999873 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.012
  Transp_cyt_pur 389 gsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylvG 440
                       +Y+ +k++  + +  + ++++  +vg         ++g+  +++++y++G
      CCD23301.1 509 KNRYNWDKWDDAEVLTHGYAATLSFIVG---------IAGVVIGMAQAYWIG 551
                     5667766666655444444444444444.........445555555555554 PP

>> UPF0139  Uncharacterised protein family (UPF0139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3      0.36   3.2e+03      40      89 ..     116     132 ..     109     139 .. 0.42
   2 ?   -2.3   0.0      0.45   4.1e+03      48      59 ..     190     201 ..     175     228 .. 0.70
   3 ?   -1.6   0.0      0.28   2.5e+03      23      41 ..     254     272 ..     237     275 .. 0.68
   4 ?    9.1   0.0   0.00013       1.2       9      54 ..     507     551 ..     500     558 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.36
     UPF0139  40 llglmlklkwcaWvalvcslisfanskssddlkqilssfmlsvsalvmsY 89 
                 +++ m+ + +                                   lv +Y
  CCD23301.1 116 MCSGMISMVIG---------------------------------CLVAAY 132
                 22222222222.................................333333 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.45
     UPF0139  48 kwcaWvalvcsl 59 
                 k+ +Wv++v+ +
  CCD23301.1 190 KVPSWVGIVIVT 201
                 777788776543 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.28
     UPF0139  23 kedltpdymnllgmifsll 41 
                 k+ l+ ++++++++ +s++
  CCD23301.1 254 KDTLKGNWLSFFSLCYSIT 272
                 5677788888888887775 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00013
     UPF0139   9 ekakrykppalssqkedltpdymnllgmifsllglmlklkwcaWva 54 
                 ++ +ry+  + +   e lt  y++ l++i+++ g+++ +  + W++
  CCD23301.1 507 STKNRYNWDKWDDA-EVLTHGYAATLSFIVGIAGVVIGMAQAYWIG 551
                 56677777777777.9999*************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.47
# Mc/sec: 3784.99
//
Query:       CCD23302.1  [L=169]
Description: hypothetical protein NDAI_0B02670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-63  210.5   0.0    6.5e-63  210.2   0.0    1.1  1  COX5B     Cytochrome c oxidase subunit Vb


Domain annotation for each model (and alignments):
>> COX5B  Cytochrome c oxidase subunit Vb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.2   0.0   3.6e-67   6.5e-63       4     129 .]      44     169 .]      41     169 .] 0.98

  Alignments for each domain:
  == domain 1  score: 210.2 bits;  conditional E-value: 3.6e-67
       COX5B   4 kaktakklaevkgeesligpgakegtvPtdleqatGleRlellgkleGidvfdmkPldasrkGtledPilvesydderyvGctGspadshkviWlkvek 102
                 + kta++laev+g+e+lig gakegtvP+d+eqatGleRlellgkleGi++fd+kPldasrkGt++dPi+++sydd+ryvGctGspa+sh+++Wlk+++
  CCD23302.1  44 TGKTASSLAEVNGPETLIGVGAKEGTVPSDVEQATGLERLELLGKLEGIEFFDTKPLDASRKGTMKDPIIINSYDDYRYVGCTGSPAGSHTIMWLKPTV 142
                 5689*********************************************************************************************** PP

       COX5B 103 ekvaRcaecGsvyklkllgeeedehhh 129
                 ekvaRc+ecGsvykl+++g+++ +h+h
  CCD23302.1 143 EKVARCWECGSVYKLNPVGVPDPDHSH 169
                 **********************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1221.49
//
Query:       CCD23303.1  [L=537]
Description: hypothetical protein NDAI_0B02680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-14   52.2   4.1     0.0046   17.8   0.1    6.4  7  WD40         WD domain, G-beta repeat
    0.00011   22.5   0.2        5.6    7.3   0.0    5.0  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.05   14.0   3.0       0.49   10.8   1.7    2.9  2  bPH_3        Bacterial PH domain
       0.12   12.4   0.6       0.31   11.1   0.2    1.9  2  HSDR_N_2     Type I restriction enzyme R protein N terminus (


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00019      0.83      12      36 ..      30      55 ..      19      57 .. 0.79
   2 !    7.6   0.0    0.0017       7.7      21      38 .]     108     124 ..      74     124 .. 0.73
   3 !    8.8   0.0   0.00068         3       6      38 .]     173     206 ..     168     206 .. 0.79
   4 ?   -3.1   0.0         4   1.8e+04      13      23 ..     231     241 ..     228     257 .. 0.72
   5 !   17.8   0.1     1e-06    0.0046      11      38 .]     289     315 ..     277     315 .. 0.83
   6 ?    1.8   0.0      0.11     5e+02      16      37 ..     351     372 ..     339     372 .. 0.88
   7 ?   -1.0   0.0      0.87   3.9e+03      12      29 ..     510     527 ..     505     533 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
                S.EEEEEEETTSSEEEEEETTSEEEE CS
        WD40 12 s.vtslafspdgawlasGsdDgtvri 36
                + +ts+ f+ +g++la+G++ g v +
  CCD23303.1 30 DiITSVEFDYSGDYLATGDKGGRVVL 55
                447***************98777766 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0017
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                  +++l+s   D+t+++W+
  CCD23303.1 108 RSKFLISTN-DKTIKLWK 124
                 456688656.*******6 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00068
                 EEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tlt.GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++  +H  +++s++ ++d+  ++s++ D  + +W+
  CCD23303.1 173 VFGnAHtYHINSISPNSDQETFISAD-DLRINLWN 206
                 553377555****9999999999877.*******8 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 4
                 EEEEEEETTSS CS
        WD40  13 vtslafspdga 23 
                 +t+  f+p   
  CCD23303.1 231 ITCAEFHPQDC 241
                 68888888654 PP

  == domain 5  score: 17.8 bits;  conditional E-value: 1e-06
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 ss+++++fsp+g+++a + d  tv+iWd
  CCD23303.1 289 SSISDIKFSPNGRYIA-SRDYLTVKIWD 315
                 3499**********97.799*******9 PP

  == domain 6  score: 1.8 bits;  conditional E-value: 0.11
                 EEEETTSSEEEEEETTSEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriW 37 
                 + fs d++ +++Gs++++ +i+
  CCD23303.1 351 VVFSGDSSSVMTGSYNNNFMIY 372
                 5599**********99998886 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 0.87
                 SEEEEEEETTSSEEEEEE CS
        WD40  12 svtslafspdgawlasGs 29 
                 s+ +++++p  + +a G 
  CCD23303.1 510 SIMHFSWHPRENTIAVGA 527
                 588899999999999885 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.014        64      40      79 ..      31      70 ..      22     104 .. 0.76
   2 ?   -0.8   0.1      0.44     2e+03      39      72 ..      94     130 ..      84     142 .. 0.63
   3 ?    2.4   0.0     0.042   1.9e+02      37      78 ..     227     269 ..     214     276 .. 0.80
   4 ?    1.2   0.0       0.1   4.6e+02      38      67 ..     288     316 ..     283     333 .. 0.71
   5 ?   -3.9   0.0       3.9   1.8e+04      35      54 ..     399     418 ..     387     421 .. 0.69
   6 !    7.3   0.0    0.0012       5.6      23      60 ..     494     530 ..     481     537 .] 0.81

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.014
  ANAPC4_WD40 40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79
                  ++s+++  +g  La + + g+v l++ ++     + +++
   CCD23303.1 31 IITSVEFDYSGDYLATGDKGGRVVLFERNHDSKNAKRTCE 70
                 5899*********************988776655555555 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.44
  ANAPC4_WD40  39 sevrsLaWkp...dgklLavaysdgevrlldaesgkv 72 
                  +++++++W +   + + + ++++d +++l ++ +++v
   CCD23303.1  94 EKINQIKWLNsttQRSKFLISTNDKTIKLWKITEKNV 130
                  5666666644111334456677777777777766554 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.042
  ANAPC4_WD40  37 edsevrsLaWkpdg.klLavaysdgevrlldaesgkvvhslsv 78 
                    + +++ +++p++ +l++ + s+g ++l+d+ +  + h  ++
   CCD23303.1 227 LTEVITCAEFHPQDcNLFMYSLSKGLIKLCDMRQNSLCHDNKA 269
                  556678888888663788899************9999997665 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.1
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrllda 67 
                   s++++++++p+g+ +a   +  +v++ d+
   CCD23303.1 288 TSSISDIKFSPNGRYIASR-DYLTVKIWDI 316
                  57899*********99864.3345666555 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 3.9
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLa 54 
                  ++++++ ++++ k+dg++L+
   CCD23303.1 399 SNNNNNNQKIKTKKDGTILM 418
                  45555556677777777775 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0012
  ANAPC4_WD40  23 RlngqrvwtleedkedsevrsLaWkpdgklLavaysdg 60 
                  R   ++ w+  + + ++++ +++W+p ++ +av+  ++
   CCD23303.1 494 RSARNKEWGD-NVDFKKSIMHFSWHPRENTIAVGATNN 530
                  5556666665.5667899****************9998 PP

>> bPH_3  Bacterial PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.7   0.00011      0.49      35      89 ..      69     133 ..      68     137 .. 0.94
   2 ?    0.6   0.0      0.17   7.5e+02      55      90 ..     158     195 ..     140     197 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
       bPH_3  35 ldpkmfggkdfeeipYksIksvdlkkgl..........lgakitletsgktitidnidksevrki 89 
                 ++ k+f++ ++++ +++ +ksv++++++            +k+ + t++kti++ +i++++v  +
  CCD23303.1  69 CEYKFFTEFQSHDAEFDYLKSVEIEEKInqikwlnsttQRSKFLISTNDKTIKLWKITEKNVTMV 133
                 88999999*****************************9999*******************99876 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.17
       bPH_3  55 svdlkkgllgakitlet.sgktitidni.dksevrkiv 90 
                 s +++++++ a+ +  + + +t++i++i ++s+ ++++
  CCD23303.1 158 SLTYHDKIISATPKRVFgNAHTYHINSIsPNSDQETFI 195
                 56667777777777777789999999998777777766 PP

>> HSDR_N_2  Type I restriction enzyme R protein N terminus (HSDR_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   6.8e-05      0.31      61     104 ..      90     133 ..      86     139 .. 0.84
   2 ?   -2.2   0.0       0.9     4e+03      48      67 ..     211     230 ..     180     276 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.8e-05
    HSDR_N_2  61 vkiseevleqlksYleal.kaeylvvtNglehivykvdkkkkkfe 104
                 v+i ee+++q+k +++++ + ++l+ tN + ++++k+ +k+ +++
  CCD23303.1  90 VEI-EEKINQIKWLNSTTqRSKFLISTNDKTIKLWKITEKNVTMV 133
                 555.469*********9879****************988887655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.9
    HSDR_N_2  48 kkpllivecKapsvkiseev 67 
                 ++ + i+++K  +++   ev
  CCD23303.1 211 DQSFNIIDIKPMNMEELTEV 230
                 45555666666555543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1400  (0.0780858); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3713.91
//
Query:       CCD23304.1  [L=129]
Description: hypothetical protein NDAI_0B02690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-36  125.0   0.3    1.9e-36  124.9   0.3    1.0  1  COX6A     Cytochrome c oxidase subunit VIa


Domain annotation for each model (and alignments):
>> COX6A  Cytochrome c oxidase subunit VIa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.3   1.1e-40   1.9e-36      18     111 ..      28     124 ..       3     125 .. 0.90

  Alignments for each domain:
  == domain 1  score: 124.9 bits;  conditional E-value: 1.1e-40
       COX6A  18 aaeneFvkereavkeHaeettdlwrklslyvaipalilaainaynlekeHaeHvehlkeleer...teYeYqnirtknffwGdGdktlFwNdkvNyh 111
                 a  n+F+k  ++ + Ha++t +lw k+s++va pa++l+a+n+y +ekeHaeH++hl+++++     +Ye+ n+r+k+ffwGdGdktlFwN+ vN+h
  CCD23304.1  28 AMANAFKKTLQTEEGHASHTKNLWFKISVWVAAPAILLTALNTYFVEKEHAEHRKHLSHVPDSewpRDYEFLNMRQKPFFWGDGDKTLFWNPVVNRH 124
                 789**********************************************************999999*****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1042.93
//
Query:       CCD23305.1  [L=630]
Description: hypothetical protein NDAI_0B02700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-57  192.8   0.2    8.4e-57  191.8   0.2    1.6  1  MT-A70    MT-A70


Domain annotation for each model (and alignments):
>> MT-A70  MT-A70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.8   0.2   4.7e-61   8.4e-57       1     172 []     346     508 ..     346     508 .. 0.99

  Alignments for each domain:
  == domain 1  score: 191.8 bits;  conditional E-value: 4.7e-61
                 ECEEEE---BHHCC..HTT--SS--B-HHHHHTS-GGGCECCEEEEEEEEETTCHHHHHHHHHHHCT-EEEEEEEEEEE-TTSCBS-BS-TTSSSBB-E CS
      MT-A70   1 fdviiidPpweeklvarkkelpyktlneeelkaLpipelldkrslvflWvtnrellelkrellkkWglelveeltwlkinklgepiatlesgavlkksk 99 
                 f+v+i+dP+w++++     +lpy+t+n+ el++Lp+++l++++ ++flWvt+r+++ + +e+l +Wg+++++e++w+k+n+lg++i+t+++g++l++sk
  CCD23305.1 346 FSVVIADPAWNIHM-----NLPYGTCNDIELLQLPLNHLQNDG-VLFLWVTGRAIELG-KESLMNWGYKVINEISWIKTNQLGRTIVTGRTGHWLNHSK 437
                 89************.....9*********************99.***********999.**************************************** PP

                 EEEEEEEES---TTT.TTB-TTSSBSEEEEE-CTTTSS-THHHHHHHHHC.TCS-EEEET--G..--TTEEEEETT CS
      MT-A70 100 EhllvgvkgnvkrstdkiinknvdtdliisperehsrKPpelfellehll.esarkLelFaRs..lrpgwltvGne 172
                 Ehllvg+kg+++     ++nk++d+dl++s +re+srKP+el+ ++e+l+ ++arkLe+F+R+  +rpgwlt+Gn+
  CCD23305.1 438 EHLLVGIKGDPR-----WVNKHIDIDLVVSTTRETSRKPDELYGMIERLVgPHARKLEIFGRDhnIRPGWLTIGNQ 508
                 ***********9.....99*******************************9***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1345  (0.0750181); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4554.28
//
Query:       CCD23306.1  [L=453]
Description: hypothetical protein NDAI_0B02710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-83  278.5   0.0    9.2e-83  278.2   0.0    1.1  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.2   0.0   5.1e-87   9.2e-83       1     306 [.      49     341 ..      49     342 .. 0.94

  Alignments for each domain:
  == domain 1  score: 278.2 bits;  conditional E-value: 5.1e-87
                    SCCGTHHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   1 hpenpkRlsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavg 96 
                    hp++p Rl  ++++l +s+gl  + ++l ++++at+ee+ ++Hs++Yl++l++++ e  +k   +  +le+ +     dd+p+++++++++ l +g
     CCD23306.1  49 HPMKPFRLM-LTDHLVSSYGLH-KIMDLYETRPATNEEMVQFHSEDYLDFLSKVTPENLSKM--PRGTLEKFN---IGDDCPIFQNLYDYSTLYTG 137
                    899999999.99******9*75.77788*************************998765554..455555555...6799**************** PP

                    HHHHHHHHHHTTSSSEEEETT.SS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-CCTSTT CS
                    xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  97 avleavdavlsgsvkaafvlv.rPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHryegifyP 191
                    a+l+a ++++++  +++++++  ++ HHak++++sGFC++N++++ i +l +   ++rv+++D+D+HhG+G++eafy +++v+t+S+H+++g+f+P
     CCD23306.1 138 ASLDATRKLIND--QSDIAINwSGGLHHAKKNNPSGFCYINDIVLSIVNLLR--YHPRVLYIDIDLHHGDGVQEAFYTTDRVFTISFHKFNGEFFP 229
                    **********99..9***********************************99..347*************************************** PP

                    SS--TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-G.EEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 192 gtgaledlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkvkkvvlll 287
                    gtg+++++g +kgk+f++nvple+g++d++y+++f++i+ p++  +kP +i+ ++G+D+l +d+lg +nl+++g++e++k ++++     ++++++
     CCD23306.1 230 GTGDYDETGCAKGKHFAMNVPLEDGIDDDSYINLFKSIMDPLITSYKPTVIVQQCGADSLGHDRLGCFNLNIKGHGECVKFIKSFGI---PMLVVG 322
                    **************************************************************************************8...99**** PP

                    -S---HHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 288 eGGYnlealaravtavlsa 306
                    +GGY++++++r +t+ + +
     CCD23306.1 323 GGGYTPRNVSRLWTYETGI 341
                    **************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3229.50
//
Query:       CCD23307.1  [L=2675]
Description: hypothetical protein NDAI_0B02720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-30  105.5  13.7    0.00031   21.2   0.0   14.7 16  HEAT_EZ        HEAT-like repeat
    2.2e-28   95.9  19.9       0.02   15.1   0.0   18.9 19  HEAT           HEAT repeat
    9.6e-26   90.0  14.6    0.00068   20.0   0.1   12.3 14  HEAT_2         HEAT repeats
    1.7e-21   77.0   8.2    8.1e-12   45.1   0.0    5.4  6  Gcn1_N         Generalcontrol nonderepressible 1 (Gcn1) N-ter
    1.9e-15   57.3  19.8          1    9.4   0.0   13.3 13  Cnd1           non-SMC mitotic condensation complex subunit 1
    3.3e-15   56.3   2.0      0.002   17.7   0.0    8.7 10  CLASP_N        CLASP N terminal
    2.6e-14   53.6   0.8      0.068   13.8   0.0    9.3  7  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    0.00023   21.1  15.0       0.79    9.6   0.0    9.7  9  DUF3385        Domain of unknown function (DUF3385)
  ------ inclusion threshold ------
      0.073   13.2   5.6         13    5.9   0.0    5.9  7  ParcG          Parkin co-regulated protein
      0.073   12.9   3.6        1.5    8.6   0.0    4.1  3  BP28CT         BP28CT (NUC211) domain
       0.86   10.0   3.3        5.1    7.4   0.1    3.9  4  AAA_16         AAA ATPase domain
          1    9.6   5.1    3.1e+02    1.6   0.0    6.5  7  RTP1_C1        Required for nuclear transport of RNA pol II C
        6.1    7.1  12.0       0.22   11.8   0.1    4.6  5  FANCI_S2       FANCI solenoid 2
        7.6    7.5   6.8    1.3e+02    3.7   0.1    5.3  4  HEAT_PBS       PBS lyase HEAT-like repeat


Domain annotation for each model (and alignments):
>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.21   2.7e+02      29      52 ..    1291    1314 ..    1282    1317 .. 0.88
   2 ?    5.6   0.0     0.018        24       3      53 ..    1306    1354 ..    1304    1356 .. 0.86
   3 ?    3.4   0.0     0.089   1.1e+02       2      51 ..    1344    1393 ..    1343    1397 .. 0.66
   4 !    7.9   0.0    0.0034       4.3       4      51 ..    1387    1434 ..    1384    1434 .. 0.80
   5 !   21.2   0.0   2.4e-07   0.00031       1      48 [.    1463    1510 ..    1463    1510 .. 0.99
   6 ?   -1.8   0.0       3.8   4.9e+03      24      41 ..    1524    1541 ..    1521    1545 .. 0.85
   7 !   13.9   0.2   4.7e-05     0.061       1      40 [.    1623    1659 ..    1623    1675 .. 0.82
   8 ?    2.3   0.0      0.19   2.5e+02      23      50 ..    1722    1749 ..    1716    1750 .. 0.64
   9 ?    2.9   0.0      0.13   1.6e+02      23      49 ..    1760    1786 ..    1754    1788 .. 0.85
  10 ?    4.1   0.0     0.055        70      20      53 ..    1868    1897 ..    1863    1899 .. 0.81
  11 !   13.9   0.1   4.5e-05     0.057       3      52 ..    1888    1935 ..    1886    1938 .. 0.92
  12 ?    6.2   0.0     0.012        15       3      42 ..    1969    2005 ..    1967    2008 .. 0.76
  13 ?    4.6   0.0     0.038        48       8      42 ..    2042    2076 ..    2041    2082 .. 0.90
  14 ?   -0.8   0.0       1.9   2.4e+03      18      33 ..    2097    2112 ..    2093    2121 .. 0.76
  15 ?    1.8   0.0      0.28   3.6e+02       3      34 ..    2228    2260 ..    2226    2282 .. 0.86
  16 !   14.6   0.0   2.7e-05     0.035      19      55 .]    2287    2324 ..    2269    2324 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.21
     HEAT_EZ   29 ilpaLlalLnddsdeVRaaAagaL 52  
                  i++ Lla+L ++s++V++a+  ++
  CCD23307.1 1291 IIDRLLATLDTPSSDVQEAVSECI 1314
                  8999***************98776 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.018
     HEAT_EZ    3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsd...eVRaaAagaLg 53  
                  v++a+  +++ l ++ +  +++++ +++  Ll     d+    +VR+ Aa+ ++
  CCD23307.1 1306 VQEAVSECIAPLVFQFRSNVEGYIRDLMNKLL-----DPTcpaRVRKGAAWGIS 1354
                  78888889988999999999999999999999.....77776799*****9775 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.089
     HEAT_EZ    2 rvRraAawaLGrlaggepel..lqplvpeilpaLlalLnddsdeV.RaaAaga 51  
                  rvR +Aaw+++   g  + +   ++   +i++ L+ + +d++ +  R+ +a a
  CCD23307.1 1344 RVRKGAAWGIS---GLVKGYgiSALSEFDIIRNLMEAAEDKKESKrRESVALA 1393
                  8*********8...555555335557777888888888776663336666655 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0034
     HEAT_EZ    4 RraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAaga 51  
                  R+++a+a+ +l    +   +p+v e+lp  l+ L d+ +eVR a+a a
  CCD23307.1 1387 RESVALAFECLSKSLKKFFEPYVIEVLPNILKNLGDSVPEVRNATAEA 1434
                  666666773355666666789************************976 PP

  == domain 5  score: 21.2 bits;  conditional E-value: 2.4e-07
     HEAT_EZ    1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaA 48  
                  wr +r+ +  LG++a   p +l+  ++ i+p+ +  Lnd+++eVR+aA
  CCD23307.1 1463 WRTKRGSVELLGNMAYLDPTQLSSSLSTIVPEIVGVLNDSHKEVRKAA 1510
                  99********************************************98 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 3.8
     HEAT_EZ   24 plvpeilpaLlalLndds 41  
                  p+++ ++p Ll++  d+ 
  CCD23307.1 1524 PEIQNLVPVLLQAIGDPT 1541
                  8999*******9998876 PP

  == domain 7  score: 13.9 bits;  conditional E-value: 4.7e-05
     HEAT_EZ    1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLndd 40  
                  ++ R+ Aa+aLG   +   +l + + p+++p Ll +L+d+
  CCD23307.1 1623 PNTRATAARALG---ALVERLGEEQFPDLIPRLLDTLSDE 1659
                  5789********...6668***************999774 PP

  == domain 8  score: 2.3 bits;  conditional E-value: 0.19
     HEAT_EZ   23 qplvpeilpaLlalLnddsdeVRaaAag 50  
                  +p++ +i+ + l++L d + ++R +++ 
  CCD23307.1 1722 APYINQIIQPILSGLADNDENIRDTSLK 1749
                  45556666666666666666***99876 PP

  == domain 9  score: 2.9 bits;  conditional E-value: 0.13
     HEAT_EZ   23 qplvpeilpaLlalLnddsdeVRaaAa 49  
                   ++++ +lp+L +++ d++d++R  ++
  CCD23307.1 1760 TKAIDLLLPELERGMFDENDRIRLSSV 1786
                  568899****************98776 PP

  == domain 10  score: 4.1 bits;  conditional E-value: 0.055
     HEAT_EZ   20 ellqplvpeilpaLlalLnddsdeV.RaaAagaLg 53  
                  e l++l + i+  L+     +s++V R  Aa +Lg
  CCD23307.1 1868 EILPTLTSIIVTHLA-----SSSNVlRNIAAQTLG 1897
                  556677777888888.....**************9 PP

  == domain 11  score: 13.9 bits;  conditional E-value: 4.5e-05
     HEAT_EZ    3 vRraAawaLGrlaggepellqplvpeilpaLlalL.nddsdeVRaaAagaL 52  
                  +R+ Aa +LG      ++    +++++lp L   L ++++++ R+ +++aL
  CCD23307.1 1888 LRNIAAQTLG---DLVRRVGGNALSQLLPTLEESLeESSNSDSRQGVCIAL 1935
                  7999******...888999999999**********888888*********9 PP

  == domain 12  score: 6.2 bits;  conditional E-value: 0.012
     HEAT_EZ    3 vRraAawaLGrlaggepel.lqplvpeilpaLlalLnddsd 42  
                  vR +Aa+a+        +   +++v+ei+p+Ll +L++++d
  CCD23307.1 1969 VRSSAASAFD----AYQNVvGNLAVDEIIPYLLHMLKSEDD 2005
                  7778888884....34444267799************9998 PP

  == domain 13  score: 4.6 bits;  conditional E-value: 0.038
     HEAT_EZ    8 awaLGrlaggepellqplvpeilpaLlalLnddsd 42  
                  a+aLG+la++++ +l + ++ i+ a +++L +d++
  CCD23307.1 2042 ASALGSLAEVAGSALYKRLSTIVNAVVNALVSDHP 2076
                  679***************************88887 PP

  == domain 14  score: -0.8 bits;  conditional E-value: 1.9
     HEAT_EZ   18 epellqplvpeilpaL 33  
                  e+e l+pl+++i+ +L
  CCD23307.1 2097 EDEGLHPLLQQIMSLL 2112
                  6888999999999888 PP

  == domain 15  score: 1.8 bits;  conditional E-value: 0.28
     HEAT_EZ    3 vRraAawaLGrlaggepel.lqplvpeilpaLl 34  
                  +R+a a+a++ + +  p + l+p+v++i  +L+
  CCD23307.1 2228 EREASALAIADVVSKTPSAnLKPFVSVITGPLI 2260
                  7********98888888888999***9999998 PP

  == domain 16  score: 14.6 bits;  conditional E-value: 2.7e-05
     HEAT_EZ   19 pellqplvpeilpaLlalLnddsdeV.RaaAagaLgnl 55  
                  p+ l+p++p++ + +++ L+d+s e+ R  Aa aLg l
  CCD23307.1 2287 PQFLRPFIPQLQRTFVKSLSDPSNETlRLRAAKALGTL 2324
                  5669********************888********976 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.053        68       2      24 ..    1038    1060 ..    1038    1062 .. 0.91
   2 ?    2.0   0.0      0.26   3.3e+02       1      28 [.    1291    1318 ..    1291    1321 .. 0.85
   3 ?    0.3   0.0      0.93   1.2e+03      15      30 ..    1344    1359 ..    1335    1360 .. 0.89
   4 ?    0.5   0.0      0.77   9.8e+02       1      29 [.    1370    1399 ..    1370    1401 .. 0.79
   5 !   15.1   0.0   1.6e-05      0.02       1      28 [.    1412    1439 ..    1412    1441 .. 0.90
   6 !   10.9   0.0   0.00035      0.45       1      30 [.    1491    1520 ..    1491    1521 .. 0.92
   7 !   11.9   0.0   0.00017      0.22       9      30 ..    1618    1639 ..    1603    1640 .. 0.84
   8 ?   -0.7   0.0       1.9   2.4e+03       1      30 [.    1648    1678 ..    1648    1679 .. 0.78
   9 ?    5.0   0.0     0.028        36       1      29 [.    1728    1756 ..    1728    1758 .. 0.85
  10 ?    5.1   0.0     0.027        34       1      28 [.    1766    1793 ..    1766    1796 .. 0.90
  11 ?   -2.0   0.0       4.8   6.2e+03       5      28 ..    1836    1859 ..    1832    1861 .. 0.76
  12 ?    3.9   0.0     0.062        79       4      29 ..    1876    1901 ..    1873    1903 .. 0.84
  13 ?    3.3   0.0       0.1   1.3e+02       1      29 [.    1911    1940 ..    1911    1942 .. 0.94
  14 !    7.2   0.0    0.0053       6.8       1      26 [.    1954    1979 ..    1954    1984 .. 0.89
  15 ?    0.4   0.0      0.84   1.1e+03       1      15 [.    1992    2006 ..    1992    2018 .. 0.81
  16 ?   -1.5   0.0       3.4   4.4e+03       2      27 ..    2025    2051 ..    2024    2053 .. 0.71
  17 ?   -2.8   0.0       9.3   1.2e+04       1      24 [.    2104    2127 ..    2104    2133 .. 0.74
  18 ?    1.5   0.0      0.37   4.8e+02       1      29 [.    2213    2241 ..    2213    2243 .. 0.84
  19 !   13.0   0.0   7.2e-05     0.093       3      30 ..    2299    2327 ..    2297    2328 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.053
                  HHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT    2 lPlllkllsDpspeVReaAakaL 24  
                  l+++l++l +p+ +VR++ +++L
  CCD23307.1 1038 LDIILSNLLSPNQFVRSTILETL 1060
                  67899**************9998 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.26
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgala 28  
                  +++ ll  l  ps++V ea+ ++++ l+
  CCD23307.1 1291 IIDRLLATLDTPSSDVQEAVSECIAPLV 1318
                  67788898988************98775 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.93
                  HHHHHHHHHHHHHHHC CS
        HEAT   15 eVReaAakaLgalaev 30  
                  +VR+ Aa+ +  l+++
  CCD23307.1 1344 RVRKGAAWGISGLVKG 1359
                  6***********9997 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.77
                  HHHHHHHHHT-.SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsD.pspeVReaAakaLgalae 29  
                  ++  l+++ +D ++++ Re++a+a+  l++
  CCD23307.1 1370 IIRNLMEAAEDkKESKRRESVALAFECLSK 1399
                  56778999999677778*******988876 PP

  == domain 5  score: 15.1 bits;  conditional E-value: 1.6e-05
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgala 28  
                  +lP +lk+l D+ peVR a+a+a  a++
  CCD23307.1 1412 VLPNILKNLGDSVPEVRNATAEATKAIM 1439
                  69********************977775 PP

  == domain 6  score: 10.9 bits;  conditional E-value: 0.00035
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalaev 30  
                  ++P ++  l+D++ eVR+aA ++L ++ ev
  CCD23307.1 1491 IVPEIVGVLNDSHKEVRKAADESLKRFGEV 1520
                  78999*******************999887 PP

  == domain 7  score: 11.9 bits;  conditional E-value: 0.00017
                  HT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    9 lsDpspeVReaAakaLgalaev 30  
                  + Dp p+ R++Aa+aLgal+e 
  CCD23307.1 1618 MVDPVPNTRATAARALGALVER 1639
                  458****************985 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 1.9
                  HHHHHHHHHT-SSHHH.HHHHHHHHHHHHHC CS
        HEAT    1 llPlllkllsDpspeV.ReaAakaLgalaev 30  
                  l+P ll  lsD+  +  R  +a+aL++++++
  CCD23307.1 1648 LIPRLLDTLSDEMKSGdRLGSAQALAEVISG 1678
                  7999*******76665588888888887765 PP

  == domain 9  score: 5.0 bits;  conditional E-value: 0.028
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  ++ ++l+ l D++ ++R++++ka   +++
  CCD23307.1 1728 IIQPILSGLADNDENIRDTSLKAGKLIVK 1756
                  67889999*************99766665 PP

  == domain 10  score: 5.1 bits;  conditional E-value: 0.027
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgala 28  
                  llP l + + D++ ++R ++++  g+l+
  CCD23307.1 1766 LLPELERGMFDENDRIRLSSVQLTGELL 1793
                  79*******************9888875 PP

  == domain 11  score: -2.0 bits;  conditional E-value: 4.8
                  HHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAakaLgala 28  
                  l  + +D+s  VR++++    al+
  CCD23307.1 1836 LFVCRNDTSGIVRATTVDIWKALV 1859
                  555559*********998777776 PP

  == domain 12  score: 3.9 bits;  conditional E-value: 0.062
                  HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    4 lllkllsDpspeVReaAakaLgalae 29  
                  ++++ l ++s   R  Aa++Lg+l++
  CCD23307.1 1876 IIVTHLASSSNVLRNIAAQTLGDLVR 1901
                  5778888888999**********986 PP

  == domain 13  score: 3.3 bits;  conditional E-value: 0.1
                  HHHHHHHHH.T-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkll.sDpspeVReaAakaLgalae 29  
                  llP+l + l ++++++ R+ ++ aL +l+e
  CCD23307.1 1911 LLPTLEESLeESSNSDSRQGVCIALHELIE 1940
                  89*******99****************998 PP

  == domain 14  score: 7.2 bits;  conditional E-value: 0.0053
                  HHHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLga 26  
                  +++++ k l D + +VR++Aa a+ a
  CCD23307.1 1954 IVNIIRKTLIDVDESVRSSAASAFDA 1979
                  6889999***************9965 PP

  == domain 15  score: 0.4 bits;  conditional E-value: 0.84
                  HHHHHHHHHT-SSHH CS
        HEAT    1 llPlllkllsDpspe 15  
                  ++P ll++l++++ +
  CCD23307.1 1992 IIPYLLHMLKSEDDS 2006
                  79*******999875 PP

  == domain 16  score: -1.5 bits;  conditional E-value: 3.4
                  HHHHHHHH.T-SSHHHHHHHHHHHHHH CS
        HEAT    2 lPlllkll.sDpspeVReaAakaLgal 27  
                  +P+l+  l  +p    R++A+ +L+++
  CCD23307.1 2025 FPILIPTLlASPIDAFRASALGSLAEV 2051
                  677666654888888888888888776 PP

  == domain 17  score: -2.8 bits;  conditional E-value: 9.3
                  HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaL 24  
                  ll  +++ll++++   R+   k L
  CCD23307.1 2104 LLQQIMSLLKSDDKAKRSVISKRL 2127
                  788999***888888887766655 PP

  == domain 18  score: 1.5 bits;  conditional E-value: 0.37
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  +lP++l+ l+  s++ Rea+a+a++++++
  CCD23307.1 2213 VLPIFLHGLMYGSSDEREASALAIADVVS 2241
                  6999999998866666********99887 PP

  == domain 19  score: 13.0 bits;  conditional E-value: 7.2e-05
                  HHHHHHHT-SSHHH.HHHHHHHHHHHHHC CS
        HEAT    3 PlllkllsDpspeV.ReaAakaLgalaev 30  
                   +++k lsDps e  R  AakaLg+l+e+
  CCD23307.1 2299 RTFVKSLSDPSNETlRLRAAKALGTLIEY 2327
                  5799*****999955***********986 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       4.5   5.7e+03      29      55 ..    1034    1060 ..    1023    1065 .. 0.64
   2 ?    0.9   0.0      0.48   6.2e+02       6      79 ..    1175    1266 ..    1172    1273 .. 0.66
   3 !   11.2   0.0    0.0003      0.38       1      86 [.    1292    1393 ..    1292    1395 .. 0.75
   4 ?    5.5   0.0     0.017        22      31      59 ..    1411    1440 ..    1397    1474 .. 0.71
   5 !   15.8   0.0   1.1e-05     0.014      13      78 ..    1462    1544 ..    1451    1552 .. 0.74
   6 !   20.0   0.1   5.3e-07   0.00068      10      88 .]    1577    1673 ..    1569    1673 .. 0.75
   7 ?   -1.7   0.0       3.1   3.9e+03      32      54 ..    1763    1788 ..    1729    1808 .. 0.64
   8 ?    4.2   0.1     0.044        56      10      87 ..    1810    1896 ..    1803    1897 .. 0.68
   9 !   10.6   0.1   0.00045      0.57      11      86 ..    1883    1976 ..    1870    1978 .. 0.63
  10 !   12.6   0.0    0.0001      0.13       1      78 [.    1912    2007 ..    1912    2014 .. 0.79
  11 !    6.5   0.0    0.0083        11       1      71 [.    1993    2064 ..    1993    2089 .. 0.75
  12 ?    2.0   0.0      0.21   2.7e+02       4      58 ..    2028    2091 ..    2025    2123 .. 0.62
  13 ?   -2.6   0.0       5.8   7.5e+03      39      67 ..    2152    2183 ..    2142    2187 .. 0.58
  14 !   11.2   0.0    0.0003      0.38      13      87 ..    2268    2358 ..    2258    2359 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.5
      HEAT_2   29 npealpaLvellededpavRraaaeaL 55  
                  n++ l+++++ l +++  vR ++ e+L
  CCD23307.1 1034 NQDDLDIILSNLLSPNQFVRSTILETL 1060
                  555566666666677777777776666 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.48
      HEAT_2    6 qalendpdpevrraairaLgrignp.........ealpaLve..llededpavRraaaeaL.......gaigdpealpaLkellddddddvv 79  
                  +a+e+   ++ r +++++L +++            +++ Lve  +l d +p vR++  ea        ga +++e +p+ +++l +d  + +
  CCD23307.1 1175 SAAERKDPWQDRSTVAITLKEMAAGlseeddsivNTIKFLVEsgALGDREPLVRQEMKEAGievitihGANKSEELIPIFEHSLVSDIPASI 1266
                  66778888999999999999776544455776666799999977779999999998766552222222333566666666666666655555 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.0003
      HEAT_2    1 ldaLlqalendpdpevrraairaLg....rignp..ealpaLve.llededp.avRraaaeaLg.........aigdpealpaLkellddddddvvR 80  
                  +d Ll+ l + p+ +v+ a+ ++++    ++++    +++ L + ll+ + p +vR+ aa+ ++         a+ + + ++ L e++ d++++ +R
  CCD23307.1 1292 IDRLLATL-DTPSSDVQEAVSECIAplvfQFRSNveGYIRDLMNkLLDPTCPaRVRKGAAWGISglvkgygisALSEFDIIRNLMEAAEDKKESKRR 1387
                  57899999.9*****************995554333666666661555556548*******9963333333334456779***************** PP

      HEAT_2   81 eaAaea 86  
                  e++a a
  CCD23307.1 1388 ESVALA 1393
                  *99987 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.017
      HEAT_2   31 ealpaLvellededpavRraaaeaLgai.g 59  
                  e+lp +++ l d+ p+vR a aea  ai g
  CCD23307.1 1411 EVLPNILKNLGDSVPEVRNATAEATKAImG 1440
                  78999*******************988742 PP

  == domain 5  score: 15.8 bits;  conditional E-value: 1.1e-05
      HEAT_2   13 dpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLgaigd.......pealpaLkellddddddv 78  
                  ++ ++r  ++ Lg+++            +++p +v +l+d++ +vR+aa e+L ++g+       +  +p+L+++  d++++ 
  CCD23307.1 1462 SWRTKRGSVELLGNMAYLdptqlssslsTIVPEIVGVLNDSHKEVRKAADESLKRFGEvirnpeiQNLVPVLLQAIGDPTKYT 1544
                  788999999999955433224566666678**************************954444344558999999988877664 PP

  == domain 6  score: 20.0 bits;  conditional E-value: 5.3e-07
      HEAT_2   10 ndpdpevrraairaLg....rignp.......ealpaLvellededpavRraaaeaLgai....gd...pealpaLkellddddddvvReaAaeaLa 88  
                  +d + +++r+a++  g      +++       ++++ +  ++ d+ p++R++aa+aLga+    g+   p+ +p L++ l d+ ++  R  +a+aLa
  CCD23307.1 1577 HDRSANTKRKACKIVGnmaiLVDTKdlipylqQLIDEVKIAMVDPVPNTRATAARALGALverlGEeqfPDLIPRLLDTLSDEMKSGDRLGSAQALA 1673
                  588999**********555533455333334344555555567899************876655655678899999999999988888988999885 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 3.1
      HEAT_2   32 a...lpaLvellededpavRraaaea 54  
                  +   lp L + + de+ ++R   ++ 
  CCD23307.1 1763 IdllLPELERGMFDENDRIRLSSVQL 1788
                  23337777777778888888776665 PP

  == domain 8  score: 4.2 bits;  conditional E-value: 0.044
      HEAT_2   10 ndpdpevrraairaLgrignpealpaLvellededpavRraaae...aLg.....aigd..pealpaLkellddddddvvReaAaeaL 87  
                  +d ++e+  + +++Lg+ + +++l+aL+ + +d++  vR++ ++   aL+     a+++  p   ++    l++ ++ v R+ Aa++L
  CCD23307.1 1810 EDYNTETSTKLVDVLGQDRRDRVLAALFVCRNDTSGIVRATTVDiwkALVpntprAVKEilPTLTSIIVTHLAS-SSNVLRNIAAQTL 1896
                  678888899999*****************************997222554333223332224444555555543.5556666666666 PP

  == domain 9  score: 10.6 bits;  conditional E-value: 0.00045
      HEAT_2   11 dpdpevrraairaLg...rignp.......ealpaLvell.ededpavRraaaeaLgai.....gdpe.......alpaLkellddddddvvReaAa 84  
                  +++  +r  a+++Lg   r   +       ++lp+L e l e+++++ R+ ++ aL ++     g+ +        +++ ++ l  d d+ vR +Aa
  CCD23307.1 1883 SSSNVLRNIAAQTLGdlvR---RvggnalsQLLPTLEESLeESSNSDSRQGVCIALHELiesssGE-SlatfqdiIVNIIRKTLI-DVDESVRSSAA 1974
                  4555567788899995551...3334445599********78899***********9874443322.022233335677777666.46666677777 PP

      HEAT_2   85 ea 86  
                  +a
  CCD23307.1 1975 SA 1976
                  66 PP

  == domain 10  score: 12.6 bits;  conditional E-value: 0.0001
      HEAT_2    1 ldaLlqalendpdpevrraairaLgrignpea...........lpaLvellededpavRraaaeaLgaig.......dpealpaLkellddddddv 78  
                  l++L + le++++ + r+ +++aL ++ + ++           ++++++ l d d+ vR  aa a  a++        +e +p L+++l+++dd++
  CCD23307.1 1912 LPTLEESLEESSNSDSRQGVCIALHELIESSSgeslatfqdiiVNIIRKTLIDVDESVRSSAASAFDAYQnvvgnlaVDEIIPYLLHMLKSEDDSE 2007
                  588999*******************6544422244556666679999999**************9976642222322699**********999865 PP

  == domain 11  score: 6.5 bits;  conditional E-value: 0.0083
      HEAT_2    1 ldaLlqalendpdpevrraairaLgrignpealpaLve.llededpavRraaaeaLgaigdpealpaLkell 71  
                  +++Ll  l++  d e +   ++ + + +++ ++p+L++ ll ++  a R+ a  +L++++ ++ ++ L  ++
  CCD23307.1 1993 IPYLLHMLKSEDDSEYALLGLQDIMSTKSEVIFPILIPtLLASPIDAFRASALGSLAEVAGSALYKRLSTIV 2064
                  578999998888888888888889999999********555*****************97655444444333 PP

  == domain 12  score: 2.0 bits;  conditional E-value: 0.21
      HEAT_2    4 LlqalendpdpevrraairaLg.......rignpealpaLvell.ed.edpavRraaaeaLgai 58  
                  L+  l  +p ++ r+ a+ +L+        ++  ++++a+v++l +d +d+++ +   ++L +i
  CCD23307.1 2028 LIPTLLASPIDAFRASALGSLAevagsalYKRLSTIVNAVVNALvSDhPDEETKHSLETTLDKI 2091
                  6666667788888999999999555444333334789999998864336777777666666666 PP

  == domain 13  score: -2.6 bits;  conditional E-value: 5.8
      HEAT_2   39 llededpavRraaaeaLgai...gdpealpaL 67  
                   l+d dp+v +   +aL a+   +d++ l+ L
  CCD23307.1 2152 SLDDNDPEVVEGNFNALTALlktQDKSMLEKL 2183
                  46777777776655555544221455555555 PP

  == domain 14  score: 11.2 bits;  conditional E-value: 0.0003
      HEAT_2   13 dpevrraairaLg.......rignp...ealpaLvelleded.pavRraaaeaLgai..gdpealpaLkel...lddddddvvReaAaeaL 87  
                  + ++++a++ aL        ++  p   ++++++v+ l+d++ +  R  aa+aLg +    p++ p+  el   +++ +d+ v++a ++aL
  CCD23307.1 2268 SSDIKAAILFALNilfvkipQFLRPfipQLQRTFVKSLSDPSnETLRLRAAKALGTLieYQPRVDPLVVELvtgAKQATDEGVKTAMLKAL 2358
                  5667777777777776666654443444999*********65389**********763323554444444300045567778888877776 PP

>> Gcn1_N  Generalcontrol nonderepressible 1 (Gcn1) N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.83   1.1e+03      63     123 ..     331     390 ..     316     390 .. 0.83
   2 !   45.1   0.0   6.4e-15   8.1e-12       1     119 [.     391     507 ..     391     512 .. 0.86
   3 !   30.2   0.0   2.2e-10   2.8e-07     219     358 .]     543     671 ..     531     671 .. 0.87
   4 ?   -1.5   0.0       0.9   1.2e+03     238     288 ..    1923    1977 ..    1839    2002 .. 0.75
   5 ?    1.3   0.0      0.13   1.6e+02     241     318 ..    2039    2122 ..    2028    2130 .. 0.73
   6 ?   -2.2   0.0       1.5   1.9e+03      62     145 ..    2453    2539 ..    2394    2546 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.83
      Gcn1_N  63 pkkvvdaivkGladkKppvRrlwalrvGevlwnleee.llsssvaaskfaeavlpkLektlk 123
                 ++k +++    +++ K  vR l  + v  +l +l++e +++++    kf+++++++++++l+
  CCD23307.1 331 SSKLMSQSFSSFKSSKEIVRELSSNSVITLLKSLNDEtTEEPN--LLKFIDEIFKNIKSNLN 390
                 567777777888999999*****************98444444..59*******99998875 PP

  == domain 2  score: 45.1 bits;  conditional E-value: 6.4e-15
      Gcn1_N   1 adhRvllaemLsalp.psesvsskileglapllaKEtnEaalaaevsalakhltfllksgvevpkkvvdaivkGladkKppvRrlwalrvGevlwnlee 98 
                 ad + l++++L ++p  se+vs+ki++gl++ + KE+ E+al   +sa++ h++ l ++     +++ + i +G++dk +++R++w++   e   ++++
  CCD23307.1 391 ADYKYLVSKILVVVPtSSETVSTKIVQGLSTYITKEGKENALCLMLSAFFTHYFNLPTAV----DDMNKIIRNGFKDKTLNIRKCWFTIFLEYSKKASP 485
                 799************889**********************************98876663....68999******************988888888888 PP

      Gcn1_N  99 e.llsssvaaskfaeavlpkLe 119
                 + l + ++ + +f++++l  L+
  CCD23307.1 486 SlLGEFETDCLEFVTSTLGHLH 507
                 7755556666777777776665 PP

  == domain 3  score: 30.2 bits;  conditional E-value: 2.2e-10
      Gcn1_N 219 eaaktawaqafiylivsssvspevRrealealsklyaanpelvskviiealwswlesleeaekdsaavlaktenenLslvlkaiclspaeklgkdvdee 317
                    ++a++ af+ +++s++ +++ R + +e+l + + ++p+l++  i  a+ ++l+++   +  sa++    + ++++++ ++i++          d +
  CCD23307.1 543 LPESSALGDAFVTVALSTALPSTDRLHSIELLHDSFIRHPKLLGLSIATAVEKCLNET--TDDLSARMI---SFKYIAPIFNSISQ-------PIEDAS 629
                 457899*************************************************887..444444443...47899*******99.......578899 PP

      Gcn1_N 318 vlekqlvellVlarhelip.rssWIdlclragvDPgkLvreh 358
                 vl + l+  l++++ +  + ++ W +l+l+a+ DP ++v  h
  CCD23307.1 630 VLTSVLIAQLIISQFTGFKlKNGWAGLVLQAKQDPATIVAAH 671
                 ****************999666****************9865 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.9
      Gcn1_N  238 vspevRrealealsklyaan....pelvskviiealwswlesleeaekdsaavla 288 
                  ++++ R+ ++ al +l+ ++     ++++++i++ + + l +++e+ ++saa++ 
  CCD23307.1 1923 SNSDSRQGVCIALHELIESSsgesLATFQDIIVNIIRKTLIDVDESVRSSAASAF 1977
                  4555555555555555555433336677777777777777777666666666654 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.13
      Gcn1_N  241 evRrealealsklyaanpelvskviiealwswlesleeaekdsaavlaktenen..........Lslvlkaiclspaeklgkdvdeev 318 
                   +R +al +l++++ +   +  ++i++a+ + l s++ +e+ +++  +  +  +          L+++l+ i++  + k +++++++v
  CCD23307.1 2039 AFRASALGSLAEVAGSALYKRLSTIVNAVVNALVSDHPDEETKHSLETTLD--KiflsvdedegLHPLLQQIMS--LLKSDDKAKRSV 2122
                  68999999999999999999999999******9999555555544444333..235778888899999999998..444455555555 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 1.5
      Gcn1_N   62 vpkkvvdaivkGladkKppvRrlwalrvGevlwnleee..llsssvaask..faeavlpkLektlkevvanPlpaaqsglvseayvvl 145 
                  + +++v+ i++ ++++ p +    ++++G++l   +e+    s+++++s   + e+ +++L++ l +++ +P+ ++++    +a+vv+
  CCD23307.1 2453 LIDSFVKYIINAISSTNPYFGENGIIAAGKLLLLENEKksPFSKNESSSPfaLGEENIKNLIDVLATASLQPTCNSADCR-RVALVVI 2539
                  45666677777777777777777778888877766655563344443344226789999999999999888887766655.4566665 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2     0.026        33      62     145 ..     359     440 ..     344     445 .. 0.64
   2 ?    0.8   0.0      0.34   4.4e+02      11      43 ..     440     474 ..     430     484 .. 0.83
   3 ?    5.6   0.0     0.011        15      66     153 ..    1219    1307 ..    1188    1315 .. 0.83
   4 !    9.2   0.0   0.00088       1.1      13     120 ..    1319    1439 ..    1313    1449 .. 0.75
   5 ?    0.6   0.0       0.4   5.1e+02      60     105 ..    1492    1538 ..    1484    1565 .. 0.72
   6 !    8.8   0.0    0.0012       1.5      24     109 ..    1570    1661 ..    1565    1677 .. 0.80
   7 !    9.4   0.0    0.0008         1      14      85 ..    1720    1792 ..    1710    1821 .. 0.85
   8 !    8.7   0.0    0.0013       1.7      22     132 ..    1832    1944 ..    1826    1956 .. 0.76
   9 ?    2.3   0.1      0.12   1.6e+02      61     105 ..    1956    2001 ..    1950    2035 .. 0.58
  10 ?   -0.7   0.0      0.98   1.3e+03      79     140 ..    2042    2125 ..    2034    2137 .. 0.61
  11 ?    1.3   0.0      0.24   3.1e+02      59      98 ..    2145    2184 ..    2135    2195 .. 0.79
  12 ?    2.2   0.1      0.13   1.7e+02       2     106 ..    2271    2382 ..    2270    2422 .. 0.77
  13 ?   -0.8   0.0       1.1   1.4e+03       6      27 ..    2538    2559 ..    2535    2600 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.026
        Cnd1  62 elaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprl 145
                 +l+k l+De ++   n l ++ ei ++ ++++    + ++sk++    + se   ++i++ L++yi+k+ +  + l+  l + +
  CCD23307.1 359 TLLKSLNDETTE-EPNLLKFIDEIFKNIKSNLNADYKYLVSKILVVVPTSSETVSTKIVQGLSTYITKEGK-ENALCLMLSAFF 440
                 455555555544.344555556666554333333334445555556667********************99.666666666555 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.34
        Cnd1  11 g..cirvpnlveylvepLrkrLkDedpyVRktaai 43 
                    ++++p+ v+ + + +r+++kD+   +Rk+ + 
  CCD23307.1 440 FthYFNLPTAVDDMNKIIRNGFKDKTLNIRKCWFT 474
                 2458899************************8665 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.011
        Cnd1   66 lleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavv 153 
                  +l D +p V++  + a  e+ +  + n+  +l p   ++l++++    +++ i  + +L+++ +kd+  ++ ++++l + l +  s+v+
  CCD23307.1 1219 ALGDREPLVRQEMKEAGIEVITIhGANKSEELIPIFEHSLVSDIPASIKENVIILYGTLARHLKKDDPRIHIIIDRLLATLDTPSSDVQ 1307
                  5778888888888888777777756677778878778888888889999999999**************************99999886 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00088
        Cnd1   13 irvpnlveylvepLrkrLkDed..pyVRktaaivvakL...ilndmvkekgflselaklleDenprVvanalaalteisekse.....naiynllpd 99  
                  +++++ ve ++ +L ++L D+   + VRk aa +++ L   +      e +++ +l ++ eD++++ +  ++a+  e+++ks        ++++lp+
  CCD23307.1 1319 FQFRSNVEGYIRDLMNKLLDPTcpARVRKGAAWGISGLvkgYGISALSEFDIIRNLMEAAEDKKESKRRESVALAFECLSKSLkkffePYVIEVLPN 1415
                  688999**************975478************88888889999999**********99887777777666666664311222557889999 PP

        Cnd1  100 iisklsdalne...csewgqitil 120 
                  i+++l d+  e   ++ ++ + i+
  CCD23307.1 1416 ILKNLGDSVPEvrnATAEATKAIM 1439
                  999999866663334444445554 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.4
        Cnd1   60 lselaklleDenprVvanalaalteisek.senaiynllpdiiskls 105 
                  + e+   l+D++++V++ a  +l+   e   + +i nl+p +++ + 
  CCD23307.1 1492 VPEIVGVLNDSHKEVRKAADESLKRFGEViRNPEIQNLVPVLLQAIG 1538
                  56777889999999999999999998888544456666666555555 PP

  == domain 6  score: 8.8 bits;  conditional E-value: 0.0012
        Cnd1   24 epLrkrLkDedpyVRktaaivvakL....ilndmvkekg.flselaklleDenprVvanalaalteisek.senaiynllpdiisklsdaln 109 
                    ++++++D+++  ++ a  +v ++     ++d++   + +++e++ ++ D+ p+ +a a  al  + e+ +e+++  l p ++  lsd+++
  CCD23307.1 1570 HVIHRGMHDRSANTKRKACKIVGNMailvDTKDLIPYLQqLIDEVKIAMVDPVPNTRATAARALGALVERlGEEQFPDLIPRLLDTLSDEMK 1661
                  568999*******************954323456665555******************************8777788888888888876544 PP

  == domain 7  score: 9.4 bits;  conditional E-value: 0.0008
        Cnd1   14 rvpnlveylvepLrkrLkDedpyVRktaaivvakL.ilndmvkekg.flselaklleDenprVvanalaaltei 85  
                  ++   + ++++p+ ++L D+d+ +R t + +  kL ++n   k  + +l el++ + Den+r++ +++ +  e+
  CCD23307.1 1720 QFAPYINQIIQPILSGLADNDENIRDTSLKA-GKLiVKNYATKAIDlLLPELERGMFDENDRIRLSSVQLTGEL 1792
                  56778999*******************9987.677377778888889****************98888776665 PP

  == domain 8  score: 8.7 bits;  conditional E-value: 0.0013
        Cnd1   22 lvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselakll....eDenprVvanalaalteisek.senaiynllpdiisklsdalnecse 113 
                  ++  L  + +D++  VR t++ +   L+ n+   +k++l +l +++      +++  ++ a   l ++ ++ ++na+ +llp++  +l ++ n+ s+
  CCD23307.1 1832 VLAALFVCRNDTSGIVRATTVDIWKALVPNTPRAVKEILPTLTSIIvthlASSSNVLRNIAAQTLGDLVRRvGGNALSQLLPTLEESLEESSNSDSR 1928
                  5677888999*****************888888888777666655433317788888889999********999***************76555555 PP

        Cnd1  114 wgqitilefLlsyipkdkq 132 
                  +g +  l  L+   ++++ 
  CCD23307.1 1929 QGVCIALHELI---ESSSG 1944
                  55555555554...44444 PP

  == domain 9  score: 2.3 bits;  conditional E-value: 0.12
        Cnd1   61 selaklleDenprVvanalaalteiseksenaiyn.llpdiiskls 105 
                  + ++k l D +++V+++a +a+  +++  +n+++  + p +++ l+
  CCD23307.1 1956 NIIRKTLIDVDESVRSSAASAFDAYQNVVGNLAVDeIIPYLLHMLK 2001
                  4566777777777777777777777777434444303333333333 PP

  == domain 10  score: -0.7 bits;  conditional E-value: 0.98
        Cnd1   79 laalteiseksenaiynllpdiisklsd.....alne.................csewgqitilefLlsyipkdkqeaeslvek 140 
                   +al  ++e +++a+y+ l++i++ +++     + +e                  + +g +  l+ ++s  ++d++   s++ k
  CCD23307.1 2042 ASALGSLAEVAGSALYKRLSTIVNAVVNalvsdHPDEetkhslettldkiflsvDEDEGLHPLLQQIMSLLKSDDKAKRSVISK 2125
                  567777888877888888888888888855555222333444444555555553344555666666666666666655555554 PP

  == domain 11  score: 1.3 bits;  conditional E-value: 0.24
        Cnd1   59 flselaklleDenprVvanalaalteiseksenaiynllp 98  
                  f+s     l+D++p+Vv+   +alt +++ +++ +++ l 
  CCD23307.1 2145 FVSYAILSLDDNDPEVVEGNFNALTALLKTQDKSMLEKLV 2184
                  566666789*********9999999999997777776655 PP

  == domain 12  score: 2.2 bits;  conditional E-value: 0.13
        Cnd1    2 iRalairtlg..cirvpnlveylvepLrkr....LkDe.dpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksen 91  
                  i+a ++ +l    +++p+++ +++++L+++    L+D+ +++ R  aa ++  Li+ +   +  +++ +  + + +++ V +  l al e+  k++n
  CCD23307.1 2271 IKAAILFALNilFVKIPQFLRPFIPQLQRTfvksLSDPsNETLRLRAAKALGTLIEYQPRVDPLVVELVTGAKQATDEGVKTAMLKALLEVIVKAGN 2367
                  7788888888889999999999999999643333999735789***********9999988888888888888999999999999999999999777 PP

        Cnd1   92 aiynllpdiisklsd 106 
                  ++ +  ++ + +l++
  CCD23307.1 2368 KLNETSKNNVVNLVE 2382
                  777766666666664 PP

  == domain 13  score: -0.8 bits;  conditional E-value: 1.1
        Cnd1    6 airtlgcirvpnlveylvepLr 27  
                  +irt++ ++++++v ++++ L 
  CCD23307.1 2538 VIRTMARFKFDECVKPYITVLG 2559
                  79***************98775 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       3.4   4.4e+03      32      56 ..     168     192 ..     158     194 .. 0.83
   2 ?   -0.6   0.1      0.64   8.2e+02     100     126 ..     339     365 ..     326     388 .. 0.81
   3 ?   -1.3   0.0         1   1.3e+03     157     205 ..     435     481 ..     419     486 .. 0.76
   4 ?   -1.3   0.0         1   1.3e+03      84     116 ..     927     960 ..     917     964 .. 0.82
   5 ?    0.2   0.0      0.36   4.6e+02     145     204 ..    1184    1239 ..    1171    1260 .. 0.70
   6 !   17.7   0.0   1.6e-06     0.002      80     206 ..    1397    1520 ..    1387    1529 .. 0.87
   7 ?    0.1   0.0      0.37   4.8e+02      55     125 ..    1569    1640 ..    1564    1649 .. 0.76
   8 ?    4.8   0.0     0.014        18      53     153 ..    1686    1788 ..    1664    1816 .. 0.83
   9 !   16.6   0.0   3.4e-06    0.0044      82     206 ..    1860    1983 ..    1833    1991 .. 0.81
  10 ?    1.9   0.0      0.11   1.4e+02      40     179 ..    2244    2383 ..    2225    2407 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.4
     CLASP_N  32 rslikgnvpedaveelleclkqlle 56 
                 r+ i+  v ++ ++++++c+k++ +
  CCD23307.1 168 RRRIRESVLQSTTKTFTQCFKSTEN 192
                 88899999999********997655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.64
     CLASP_N 100 lkllgdtKkiisqnanqalaallsnas 126
                 +    + K+i+++ +++++ +ll++++
  CCD23307.1 339 FSSFKSSKEIVRELSSNSVITLLKSLN 365
                 556678999999999999999999876 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1
     CLASP_N 157 lltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffk 205
                 +l+ f   +++++  + +d ++k+++ g +D   ++R+   + f e++k
  CCD23307.1 435 MLSAFF--THYFNLPTAVDDMNKIIRNGFKDKTLNIRKCWFTIFLEYSK 481
                 555555..66777777889999999999999999999877777777766 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1
     CLASP_N  84 lkeqldpm.veillptLlkllgdtKkiisqnanq 116
                 ++++ld+  + +llp+L+++l   K ++ +na+ 
  CCD23307.1 927 NQKALDSIsLTYLLPLLINVLEEGKRVSIKNADK 960
                 3455999999****************99999975 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.36
     CLASP_N  145 qpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweff 204 
                  q R+++ai Lk +    +++  ++ ++  +  +++s   +l D +p VR++++++ +e+ 
  CCD23307.1 1184 QDRSTVAITLKEMAAGLSEEDDSIVNTIKF--LVES--GALGDREPLVRQEMKEAGIEVI 1239
                  557777777777777777555555555522..3332..4699***********9877765 PP

  == domain 6  score: 17.7 bits;  conditional E-value: 1.6e-06
     CLASP_N   80 laiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnas.f.sprilqvlsvalqdKnvqpReysaiwLkilltrfeshkskleaslll 174 
                  l++ lk+ ++p+v  +lp++lk lgd    ++++++ a +a++ +++ +  ++++ v  + l + + +++  s+++L ++    +    +l+ sl  
  CCD23307.1 1397 LSKSLKKFFEPYVIEVLPNILKNLGDSVPEVRNATAEATKAIMGHTTsYgVKKLIPVAVSNLDEISWRTKRGSVELLGNMAYLDP---TQLSSSL-- 1488
                  56777888************************************9995424666999999999*********************9...6677776.. PP

     CLASP_N  175 dliekslkkgleDanptVRetaRstfweffkv 206 
                  ++i++ ++ +l+D+  +VR++a + + +f +v
  CCD23307.1 1489 STIVPEIVGVLNDSHKEVRKAADESLKRFGEV 1520
                  89*******************98888777666 PP

  == domain 7  score: 0.1 bits;  conditional E-value: 0.37
     CLASP_N   55 leailkalssLrttlsstgchllkelaiqlkeq.ldpmveillptLlkllgdtKkiisqnanqalaallsna 125 
                  ++ i + +++ +     ++c+++ ++ai   ++ l p++++l++     + d    ++++a+ al al++ +
  CCD23307.1 1569 IHVIHRGMHDRSANTKRKACKIVGNMAILVDTKdLIPYLQQLIDEVKIAMVDPVPNTRATAARALGALVERL 1640
                  566667777777777778888888888888888888888888888888888888888888888888887765 PP

  == domain 8  score: 4.8 bits;  conditional E-value: 0.014
     CLASP_N   53 qlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnas.fspri.lqvlsvalqdKnvqpR 147 
                  +ll  il  ++  r  +    + ll  + i ++ q++p+++++++ +l  l+d+ + i+ ++  a + +++n      ++ l  l+ ++ d n ++R
  CCD23307.1 1686 ELLPTILAGVTNFRAYVREGFMPLLLFIPICFGAQFAPYINQIIQPILSGLADNDENIRDTSLKAGKLIVKNYAtKAIDLlLPELERGMFDENDRIR 1782
                  67788899999999999999999999999999****************************9999999999998712334556677888888888888 PP

     CLASP_N  148 eysaiw 153 
                  + s+++
  CCD23307.1 1783 LSSVQL 1788
                  877766 PP

  == domain 9  score: 16.6 bits;  conditional E-value: 3.4e-06
     CLASP_N   82 iqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnas..fspri.lqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllld 175 
                      +++++ +  l +++++ l++  ++ ++ a+q+l +l++ ++    +++  ++ +++ +  n   R+ ++i L+ l+++++   ++l   +  d
  CCD23307.1 1860 PNTPRAVKEILPTLTSIIVTHLASSSNVLRNIAAQTLGDLVRRVGgnALSQLlPTLEESLEESSNSDSRQGVCIALHELIESSS--GESLATFQ--D 1952
                  555566777777888899999**********************995445667355555666678999***************99..55555444..8 PP

     CLASP_N  176 liekslkkgleDanptVRetaRstfweffkv 206 
                   i+++++k l D + +VR++a s+f  + +v
  CCD23307.1 1953 IIVNIIRKTLIDVDESVRSSAASAFDAYQNV 1983
                  9********************9999777666 PP

  == domain 10  score: 1.9 bits;  conditional E-value: 0.11
     CLASP_N   40 pedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeq.ldpmveillptLlkllgdt.Kkiisqnanqalaallsnasfspri.lq 133 
                  p+ + +++++++      +++ + +  ++ +++++++  +++ +  +q l p++ +l  t++k l+d   +  +  a+ al +l++  +    + + 
  CCD23307.1 2244 PSANLKPFVSVIT---GPLIRVVGERFSSDIKAAILFALNILFVKIPQfLRPFIPQLQRTFVKSLSDPsNETLRLRAAKALGTLIEYQPRVDPLvVE 2337
                  6666666666666...555566666666666666666666666666676889999999999999998615677889999999999988844444488 PP

     CLASP_N  134 vlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliek 179 
                  +++ a q      ++ +++ L  ++ + +++ ++ +++++++l+e+
  CCD23307.1 2338 LVTGAKQATDEGVKTAMLKALLEVIVKAGNKLNETSKNNVVNLVEE 2383
                  8888888888888888888888888888877777777777777665 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.86   1.1e+03      24      72 ..    1102    1150 ..    1097    1161 .. 0.65
   2 ?    4.5   0.0      0.04        52       4      52 ..    1388    1436 ..    1369    1454 .. 0.81
   3 !    8.2   0.0     0.003       3.8      19      67 ..    1482    1530 ..    1464    1554 .. 0.79
   4 ?    2.8   0.0      0.14   1.8e+02      25      88 ..    1565    1629 ..    1556    1639 .. 0.84
   5 !   13.8   0.0   5.3e-05     0.068       5      64 ..    1705    1764 ..    1701    1794 .. 0.78
   6 !    9.9   0.0   0.00084       1.1      40      89 ..    1924    1974 ..    1891    1980 .. 0.78
   7 ?   -2.3   0.0       5.3   6.8e+03       5      41 ..    2043    2080 ..    2040    2084 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.86
  Vac14_Fab1_bd   24 yleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifda 72  
                     + +e+++ +l+ f+ +ds +R +++ +    +  + ++  ++l+e +++
     CCD23307.1 1102 INDELITKLLTLFNQDDSGLRLFTAKAYAYASMYLAKDSASVLQEHLNV 1150
                     5689999***********9998876654333333333334444444444 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.04
  Vac14_Fab1_bd    4 kggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEsly 52  
                     +   +++ +++ +l+k  ++y+ e+++ +lk + D+  +vR  ++E+  
     CCD23307.1 1388 ESVALAFECLSKSLKKFFEPYVIEVLPNILKNLGDSVPEVRNATAEATK 1436
                     4555677788889999999999999999999999999999988888765 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.003
  Vac14_Fab1_bd   19 kkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlklln 67  
                     +++++ l++iv+ ++ +++D+ ++vR  a Esl     v+++  +++l 
     CCD23307.1 1482 TQLSSSLSTIVPEIVGVLNDSHKEVRKAADESLKRFGEVIRNPEIQNLV 1530
                     5688899**************************9999999887776654 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.14
  Vac14_Fab1_bd   25 leeivkpvlkcfsDkdsrvRyyacEslyniakva.kgevlkllneifdalvklvaDsdesvksga 88  
                     l  i++++ + ++D+++ ++  ac  + n+a  +  ++++ +l+++ d +   + D  ++ + +a
     CCD23307.1 1565 LALIIHVIHRGMHDRSANTKRKACKIVGNMAILVdTKDLIPYLQQLIDEVKIAMVDPVPNTRATA 1629
                     56799999999*****************9987661567889********9999999999998765 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 5.3e-05
  Vac14_Fab1_bd    5 ggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlk 64  
                     g +  L ++ i  +++ ++y+++i++p+l+ + D+d+ +R ++  +   i+k   ++++ 
     CCD23307.1 1705 GFMPLLLFIPICFGAQFAPYINQIIQPILSGLADNDENIRDTSLKAGKLIVKNYATKAID 1764
                     55555778899999**************************99888887777777666655 PP

  == domain 6  score: 9.9 bits;  conditional E-value: 0.00084
  Vac14_Fab1_bd   40 dsrvRyyacEslyniakvakgevlkllneif.dalvklvaDsdesvksgae 89  
                     +s  R  +c +l+ ++  + ge l ++++i  +++ k + D+desv+s+a+
     CCD23307.1 1924 NSDSRQGVCIALHELIESSSGESLATFQDIIvNIIRKTLIDVDESVRSSAA 1974
                     4556788999*****************997527888999********9874 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 5.3
  Vac14_Fab1_bd    5 ggligLaava.ialekkikeyleeivkpvlkcfsDkds 41  
                      +l +La va  al k+++++++ +v+ +++   D+++
     CCD23307.1 2043 SALGSLAEVAgSALYKRLSTIVNAVVNALVSDHPDEET 2080
                     55666666652467777777777777777777777665 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.7       0.2   2.6e+02      76     156 ..     342     422 ..     309     425 .. 0.72
   2 ?    0.4   0.1      0.42   5.4e+02      72     107 ..     832     866 ..     779     874 .. 0.65
   3 ?   -2.7   0.0       3.7   4.8e+03      85     134 ..    1289    1337 ..    1269    1347 .. 0.74
   4 !    9.6   0.0   0.00062      0.79      53     140 ..    1378    1502 ..    1362    1543 .. 0.72
   5 ?    0.7   0.0      0.34   4.3e+02     135     135 ..    1697    1697 ..    1559    1756 .. 0.59
   6 ?    0.6   0.0      0.37   4.7e+02     107     160 ..    1846    1903 ..    1791    1904 .. 0.73
   7 ?   -0.2   0.0      0.64   8.1e+02      83     150 ..    1950    2010 ..    1913    2019 .. 0.49
   8 ?    4.3   0.0     0.026        34      65     158 ..    2233    2326 ..    2221    2328 .. 0.80
   9 ?   -3.5   0.0       6.4   8.3e+03      72      96 ..    2339    2366 ..    2333    2415 .. 0.59

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.2
     DUF3385  76 spsneeyyptvvinaLlril...kdpslsshhaavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLatL 156
                  +s++e+      n+++++l   +d++  +   + ++ i  ifk+++++     + +++++l v+ t++e +++  ++q L+t 
  CCD23307.1 342 FKSSKEIVRELSSNSVITLLkslNDET--TEEPNLLKFIDEIFKNIKSNLNADYKYLVSKILVVVPTSSE-TVSTKIVQGLSTY 422
                 345566666655555555551115555..457899999999***99999999999999999999999888.9999999988875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.42
     DUF3385  72 mvglspsneeyyptvvinaLlrilkdpslsshhaav 107
                 ++ + +  ++++  v++n+Llr+ ++ps s+  ++ 
  CCD23307.1 832 STLVDNG-NQVWYPVAVNNLLRLAQEPSSSKLVNTS 866
                 2233333.5555568*************99876655 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.7
     DUF3385   85 tvvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipall 134 
                  +++i  Ll+ l+ ps +  ++av e i   + + ++++  +++ ++++ll
  CCD23307.1 1289 HIIIDRLLATLDTPSSD-VQEAVSECIAPLVFQFRSNVEGYIRDLMNKLL 1337
                  58899999999998854.66666666665555566677777777777665 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00062
     DUF3385   53 aedkkrreeaaretdlsllmvglspsneeyyptvvinaLlril.....kdpslsshhaavveaimnifktlglkc.vp................... 124 
                  a   ++++e++r ++++l+  +ls+s + +++ +vi+ L +il     + p +++  a++ +aim   ++ g+k  +p                   
  CCD23307.1 1378 A---EDKKESKRRESVALAFECLSKSLKKFFEPYVIEVLPNILknlgdSVPEVRNATAEATKAIMGHTTSYGVKKlIPvavsnldeiswrtkrgsve 1471
                  2...345677788899999************************777666688888888899999888888887774445555555555555555555 PP

     DUF3385  125 ...............fLdqiipallsvirtt 140 
                                  L+ i+p+++ v++++
  CCD23307.1 1472 llgnmayldptqlssSLSTIVPEIVGVLNDS 1502
                  5555555555555555555555555555555 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.34
     DUF3385  135 s 135 
                  +
  CCD23307.1 1697 N 1697
                  1 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.37
     DUF3385  107 vveai.mnifktlglkcvpfLdqiipallsvir...tteesnlrefllqqLatLvsiv 160 
                  +v+a  + i k l  +    +++i+p+l s+i     ++++ lr+   q L++Lv+ v
  CCD23307.1 1846 IVRATtVDIWKALVPNTPRAVKEILPTLTSIIVthlASSSNVLRNIAAQTLGDLVRRV 1903
                  44443377888888888999999***99998874443345578899999999999865 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 0.64
     DUF3385   83 yptvvinaLlril..kdpslsshhaavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefll 150 
                  ++ +++n + + l   d+s++s  a++ +a  n++ +        +d+iip ll+++++ ++   +e+ l
  CCD23307.1 1950 FQDIIVNIIRKTLidVDESVRSSAASAFDAYQNVVGN------LAVDEIIPYLLHMLKSEDD---SEYAL 2010
                  3333333333333333344444444444444444443......2567888888888887665...45555 PP

  == domain 8  score: 4.3 bits;  conditional E-value: 0.026
     DUF3385   65 etdlsllmvglspsneeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLatLvs 158 
                  +  ++ ++ ++ ++n   + +v+   L+r++ ++  s+ +aa++ a+   f ++     pf++q+  ++++ +++ ++++lr    ++L+tL++
  CCD23307.1 2233 ALAIADVVSKTPSANLKPFVSVITGPLIRVVGERFSSDIKAAILFALNILFVKIPQFLRPFIPQLQRTFVKSLSDPSNETLRLRAAKALGTLIE 2326
                  3444454444444458888889999999999999989888888888888899888888999999999***********9***********9997 PP

  == domain 9  score: -3.5 bits;  conditional E-value: 6.4
     DUF3385   72 mvglspsneeyyptvvinaLlril...k 96  
                  ++g +++++e  +t +++aLl+++    
  CCD23307.1 2339 VTGAKQATDEGVKTAMLKALLEVIvkaG 2366
                  5556666677777777777776663321 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.1   2.7e+03      40     104 ..     335     404 ..     326     423 .. 0.71
   2 ?    1.1   0.0      0.29   3.7e+02      78     131 ..    1565    1616 ..    1544    1673 .. 0.71
   3 ?    5.9   0.0    0.0098        13      37     110 ..    1685    1757 ..    1679    1768 .. 0.87
   4 ?    1.6   0.0       0.2   2.6e+02      44     120 ..    1878    1949 ..    1856    2001 .. 0.79
   5 ?   -2.7   0.0       4.4   5.7e+03      75      89 ..    2177    2191 ..    2146    2196 .. 0.58
   6 ?   -0.5   0.0      0.91   1.2e+03      39     129 ..    2213    2301 ..    2209    2327 .. 0.66
   7 ?   -2.7   0.0       4.3   5.5e+03      57     110 ..    2316    2365 ..    2295    2391 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.1
       ParcG  40 LplffdGlretkhpyrflategikdllea.....ageekilpvlpklilplkeaLntrdeeviesaLkvl 104
                 +   f   + +k+  r l+ + ++ ll++     + e ++l+ + ++   +k++Ln+  +  + + L v+
  CCD23307.1 335 MSQSFSSFKSSKEIVRELSSNSVITLLKSlndetTEEPNLLKFIDEIFKNIKSNLNADYKYLVSKILVVV 404
                 5555666666777778888888888888877776667788999999999999999887777776666555 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.29
       ParcG   78 lpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvlnl 131 
                  l+ +i  +++ ++ r+ +   +a k++ ++  a  +  + L+py++ql+  +++
  CCD23307.1 1565 LALIIHVIHRGMHDRSANTKRKACKIVGNM--AILVDTKDLIPYLQQLIDEVKI 1616
                  555677788888888888888888888888..3334457899999998876654 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0098
       ParcG   37 dalLplffdGlretkhpyrflategikdllea...ageekilpvlpklilplkeaLntrdeeviesaLkvlqklvka 110 
                  d+lLp+++ G+++    +r+  +eg++ ll     + + +  p ++++i p+ + L  +de++  ++Lk+ + +vk 
  CCD23307.1 1685 DELLPTILAGVTN----FRAYVREGFMPLLLFipiCFGAQFAPYINQIIQPILSGLADNDENIRDTSLKAGKLIVKN 1757
                  5778888888876....8999999999999988899999******************************99888765 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.2
       ParcG   44 fdGlretkhpyrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvp 120 
                  ++ l+ +++  r +a +++ dl+++ g++ + ++lp l   l e  n+ +++ ++ aL+ l      +++ ge+L  
  CCD23307.1 1878 VTHLASSSNVLRNIAAQTLGDLVRRVGGNALSQLLPTLEESLEESSNSDSRQGVCIALHELI-----ESSSGESLAT 1949
                  55566667777889999999999999999999999999999999999999988888887662.....3334555555 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 4.4
       ParcG   75 lpvlpklilplkeaL 89  
                   ++l kl+ p k+aL
  CCD23307.1 2177 KSMLEKLVKPAKQAL 2191
                  245666666666666 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 0.91
       ParcG   39 lLplffdGlretkhpyrflategikdlleaageekilpvlpk....lilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvl 129 
                  +Lp+f+ Gl+  + + r  +  +i d+++++ + ++ p +      li  + e +++  ++ i  aL++l         i + L p++ ql  ++
  CCD23307.1 2213 VLPIFLHGLMYGSSDEREASALAIADVVSKTPSANLKPFVSVitgpLIRVVGERFSSDIKAAILFALNIL------FVKIPQFLRPFIPQLQRTF 2301
                  79**************************995555555554440001555555566665556666666665......3456667777777765555 PP

  == domain 7  score: -2.7 bits;  conditional E-value: 4.3
       ParcG   57 lategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqk.lvka 110 
                   a +++  l+e   + ++ p++ +l+++ k+a +     v +++Lk+l + +vka
  CCD23307.1 2316 RAAKALGTLIEY--QPRVDPLVVELVTGAKQATDE---GVKTAMLKALLEvIVKA 2365
                  555566666665..667888888888888877544...44444444442203333 PP

>> BP28CT  BP28CT (NUC211) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.12   1.6e+02      99     153 ..     128     189 ..     119     193 .. 0.61
   2 ?   -3.1   0.5       4.8   6.1e+03      45      80 ..     755     786 ..     753     795 .. 0.66
   3 ?    8.6   0.0    0.0012       1.5      73     121 ..    1378    1426 ..    1368    1476 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.12
                 ---TTHHHHHHHHHHHHH--.......-------HH...........HHHHHHHHHHHHHHH CS
      BP28CT  99 lftsYasyllenavelLkal.......nekseeskekkkkkeekkveLlrlvlstLtkcflh 153
                 l++ Yas lle  + +   +       +  +++++++++++++ +   l+++++t t+cf+ 
  CCD23307.1 128 LVSEYASRLLEAHTYTTFGIenvldnqEGIKKAQNKRNQHRRRIRESVLQSTTKTFTQCFKS 189
                 67777777777655544222333332122244444444455778888888888899999876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.8
                 HHHHH-----HHHHHHHHHHHH...HHTSTT----- CS
      BP28CT  45 alvlKLneatFrPlFlklveWaeeesselskkdske 80 
                 ++v KL+++  +   +++++W ++  +  ++ ++++
  CCD23307.1 755 KMVNKLSDKNTKD--YETLKWEQSIRK--EQAKKNA 786
                 6999999999988..588889863222..2222223 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0012
                  STT-----HHHHHHHHHHHHH--------TTHHHHHHHHHHHHH----- CS
      BP28CT   73 lskkdskeRlitfykllnklaekLkslftsYasyllenavelLkalnek 121 
                  ++ k++++R+ ++   ++ l+++Lk+ f +Y+  +l n+++ L    ++
  CCD23307.1 1378 AEDKKESKRRESVALAFECLSKSLKKFFEPYVIEVLPNILKNLGDSVPE 1426
                  345566799999******************************9665333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1     0.004       5.1      80     163 ..    1105    1201 ..    1016    1208 .. 0.78
   2 ?   -2.2   0.0       3.8   4.8e+03      72     117 ..    1629    1682 ..    1602    1711 .. 0.60
   3 ?   -3.2   0.1       7.2   9.2e+03      74     128 ..    1894    1940 ..    1879    1983 .. 0.53
   4 ?   -0.8   0.0       1.4   1.8e+03      70     127 ..    2291    2362 ..    2263    2382 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.004
      AAA_16   80 ellrqllde..aesaeleawrekleeala.........avpelagaeasrllellkrllallsrderplvlvlDdlq............wadeaslq 153 
                  el+++ll+   +   + +          +         a+  la ++as l e+l+ ll++++++++pl  +lD++             w d ++ +
  CCD23307.1 1105 ELITKLLTLfnQ---DDSGL--------RlftakayayASMYLAKDSASVLQEHLNVLLRFYEEKSKPLEAILDEFGlvvvsaaerkdpWQDRSTVA 1190
                  444444444211...22222........02223333367789999999****************************999999999999999999999 PP

      AAA_16  154 l.laaLlrlle 163 
                  + l+++++ l+
  CCD23307.1 1191 ItLKEMAAGLS 1201
                  99988887765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.8
      AAA_16   72 laqalareellrqlldeaesaeleawrekleealaavpelagaea..........s 117 
                   a+al    l++ l++e+  ++ ++  ++l +++++++ l +a+a          s
  CCD23307.1 1629 AARAL-G-ALVERLGEEQFPDLIPRLLDTLSDEMKSGDRLGSAQAlaevisglglS 1682
                  44444.4.556666666555555555555555555555555555544444455554 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 7.2
      AAA_16   74 qalareellrqlldeaesaeleawrekleealaavpelagaeasrllellkrlla 128 
                  q+l   +l+r ++ +    +l++   +lee+l++  +  +++++ ++ +l +l++
  CCD23307.1 1894 QTL-G-DLVRRVGGN----ALSQLLPTLEESLEE--SSNSDSRQGVCIALHELIE 1940
                  333.3.444444444....444444444444441..1112222344444444442 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.4
      AAA_16   70 salaqalareellrqlldeaesaeleawrekleeala..............avpelagaea..srllellkrll 127 
                   +++ +l ++++++ l d+++++++ +++++l + ++               +++++++    +++l +l + +
  CCD23307.1 2291 RPFIPQL-QRTFVKSLSDPSNETLRLRAAKALGTLIEyqprvdplvvelvtGAKQATDE-GvkTAMLKALLEVI 2362
                  4599999.55*********9999999999999999998886666666555422222222.13544444444444 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.8   7.5e+03      61     102 ..    1470    1521 ..    1469    1523 .. 0.70
   2 ?    1.6   0.0      0.24   3.1e+02      18     107 ..    1628    1677 ..    1612    1682 .. 0.60
   3 ?   -1.7   0.0       2.6   3.3e+03      38      84 ..    1725    1775 ..    1684    1826 .. 0.68
   4 ?    1.2   0.0      0.32   4.1e+02      14     106 ..    1846    1939 ..    1839    1945 .. 0.79
   5 ?   -0.9   0.0       1.5   1.9e+03      63      63 ..    2012    2012 ..    1932    2088 .. 0.58
   6 ?   -1.1   0.1       1.6     2e+03       5      81 ..    2109    2185 ..    2105    2192 .. 0.70
   7 ?    0.3   0.0      0.61   7.9e+02      38     106 ..    2294    2362 ..    2270    2375 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.8
     RTP1_C1   61 ikgLvaLadvfpeevlklLleey.........eeenekeslderl.kvGEaL 102 
                  +++L ++a  +p++  + L   +         ++++ +++ de l + GE++
  CCD23307.1 1470 VELLGNMAYLDPTQLSSSLSTIVpeivgvlndSHKEVRKAADESLkRFGEVI 1521
                  6677777777777777777777777777777755666677777775788886 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.24
     RTP1_C1   18 hglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey.eeenekeslderlkvGEaLlrvir 107 
                                                            a ++L aL+++  ee ++ L+ +   + +++ ++ +rl  ++aL +vi 
  CCD23307.1 1628 T-----------------------------------------AARALGALVERLGEEQFPDLIPRLlDTLSDEMKSGDRLGSAQALAEVIS 1677
                  4.........................................4455666666666666666665554444555566666666666666665 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.6
     RTP1_C1   38 iekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey....e 84  
                  i++i++ +l+ L+d+d+ +   + k+   +++ + ++ ++lLl e      
  CCD23307.1 1725 INQIIQPILSGLADNDENIRDTSLKAGKLIVKNYATKAIDLLLPELergmF 1775
                  567777777788888877777777777777777777777777777744442 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.32
     RTP1_C1   14 pvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleey.eeenekeslderlkvGEaLlrvi 106 
                   vra  +   + l+ +  +  ++ +++++++++++L+ +   +   a ++L  L+ ++  + l++Ll    e+ +e++++d r  v  aL ++i
  CCD23307.1 1846 IVRATTVDIWKALVPNTPRAVKEILPTLTSIIVTHLASSSNVLRNIAAQTLGDLVRRVGGNALSQLLPTLeESLEESSNSDSRQGVCIALHELI 1939
                  578888888888888888778888899999999999999998888999******************9999545566667777766666666665 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1.5
     RTP1_C1   63 g 63  
                  g
  CCD23307.1 2012 G 2012
                  3 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 1.6
     RTP1_C1    5 lkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLle 81  
                  ++ l+++  + r+     L + +e+ + +  + ++  ++  + +L d+d+ v     ++L+aL ++ ++++l++L++
  CCD23307.1 2109 MSLLKSDDKAKRSVISKRLPNFFEHTTLNLDIYVPDFVSYAILSLDDNDPEVVEGNFNALTALLKTQDKSMLEKLVK 2185
                  55555555555555555555556666656667777778888888888888888888899999999999999999986 PP

  == domain 7  score: 0.3 bits;  conditional E-value: 0.61
     RTP1_C1   38 iekilkllleaLkde.dsYvYLnaikgLvaLadvfpeevlklLleeyeeenekeslderlkvG..EaLlrvi 106 
                  i+++ ++++++L+d+ ++ + L a k+L +L+++ p+ v +l++e +  +  k+++de +k +   aLl+vi
  CCD23307.1 2294 IPQLQRTFVKSLSDPsNETLRLRAAKALGTLIEYQPR-VDPLVVELV--TGAKQATDEGVKTAmlKALLEVI 2362
                  6677777777777742566778888889999888654.777777777..33334444433333223444444 PP

>> FANCI_S2  FANCI solenoid 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2       1.6     2e+03      82     135 ..      29      83 ..      16     100 .. 0.52
   2 ?   -1.3   0.1       1.9   2.4e+03      31      78 ..     383     430 ..     329     440 .. 0.68
   3 ?   11.8   0.1   0.00017      0.22      53     163 ..    1859    1977 ..    1825    1977 .. 0.79
   4 ?   -2.6   0.1       4.6   5.9e+03      99     141 ..    2079    2123 ..    2070    2124 .. 0.75
   5 ?   -2.9   0.0       5.6   7.2e+03      53      90 ..    2367    2404 ..    2337    2406 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.6
    FANCI_S2  82 yiklLselvksapltllesssklkelldylsflpletatallkAl.lPLlkvses 135
                 +++ L++ + s++l+l + ++    ll+ +  ++ +++++l++ + + +lk++ +
  CCD23307.1  29 FLESLKKVIDSETLELPQLTQISVILLKTFMTYQDTQSKELVTRIfQSILKIEPR 83 
                 5555555555555555443333333444444444444444443321344444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.9
    FANCI_S2  31 aaksktvaqaaaklgsqiLlelfkvhesarseiieqllsriitkseee 78 
                 ++ +++ ++  + l+s+iL+ +    e ++ +i++ l   i+++ +e+
  CCD23307.1 383 KNIKSNLNADYKYLVSKILVVVPTSSETVSTKIVQGLSTYITKEGKEN 430
                 444566666677788888888888888888888888887777777664 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00017
    FANCI_S2   53 fkvhesarseiieqllsriitkseeev....sqyiklLselvksap.ltllesssklkelldylsflpletatallkAllPLlkvs.....eslrda 139 
                  +     a +ei+  l+s i+t+ ++++    +  ++ L++lv++     l++   +l+e+l++    +++  +++  Al  L+  s      +++d 
  CCD23307.1 1859 VPNTPRAVKEILPTLTSIIVTHLASSSnvlrNIAAQTLGDLVRRVGgNALSQLLPTLEESLEES--SNSDSRQGVCIALHELIESSsgeslATFQDI 1953
                  5555667788888888888777555431112556789999999976255666677799999988..67788889999*******9977666789*** PP

    FANCI_S2  140 lilvLRKalfsreldaRkiAvaGf 163 
                  ++ ++RK+l+  ++++R +A ++f
  CCD23307.1 1954 IVNIIRKTLIDVDESVRSSAASAF 1977
                  ********************9998 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 4.6
    FANCI_S2   99 esssklkelldylsflpl...etatallkAllPLlkvseslrdali 141 
                  e +++l+++ld + fl+    e  + ll+ ++ Llk   + + ++i
  CCD23307.1 2079 ETKHSLETTLDKI-FLSVdedEGLHPLLQQIMSLLKSDDKAKRSVI 2123
                  5667789999987.44441115556789999999999999999888 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 5.6
    FANCI_S2   53 fkvhesarseiieqllsriitkseeevsqyiklLselv 90  
                   k +e  ++++++ + +++++++++ +  y+kl+++l 
  CCD23307.1 2367 NKLNETSKNNVVNLVEEEMLSSNDKLAIAYAKLIGSLS 2404
                  33467778889999999999999998999999998875 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       3.2   4.1e+03       9      23 ..    1534    1553 ..    1533    1553 .. 0.86
   2 ?    3.7   0.1     0.098   1.3e+02       2      22 ..    1626    1653 ..    1625    1658 .. 0.71
   3 ?   -0.5   0.0       2.4     3e+03       1      26 [.    1969    2001 ..    1969    2002 .. 0.73
   4 ?    1.9   0.5       0.4   5.1e+02       2      12 ..    2314    2324 ..    2313    2324 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.2
                  HHHCTS.....GGGHHHHHH CS
    HEAT_PBS    9 Lgqlgd.....eeaipaLle 23  
                  L ++gd     e+a++aL++
  CCD23307.1 1534 LQAIGDptkytEDALDALIQ 1553
                  56789999999*******96 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.098
                  HHHHHHHHHHCTS.......GGGHHHHH CS
    HEAT_PBS    2 RraAakaLgqlgd.......eeaipaLl 22  
                  R+ Aa+aLg+l         ++ ip+Ll
  CCD23307.1 1626 RATAARALGALVErlgeeqfPDLIPRLL 1653
                  899*******988888555555555554 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.4
                  HHHHHHHHHHHCTS.......GGGHHHHHHHCT CS
    HEAT_PBS    1 vRraAakaLgqlgd.......eeaipaLleaLq 26  
                  vR +Aa a  + +        +e+ip Ll  L+
  CCD23307.1 1969 VRSSAASAFDAYQNvvgnlavDEIIPYLLHMLK 2001
                  677777777666666666666999999999886 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.4
                  HHHHHHHHHHC CS
    HEAT_PBS    2 RraAakaLgql 12  
                  R +AakaLg+l
  CCD23307.1 2314 RLRAAKALGTL 2324
                  99*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1298  (0.0723967); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.59u 0.36s 00:00:01.95 Elapsed: 00:00:00.56
# Mc/sec: 14383.59
//
Query:       CCD23308.1  [L=428]
Description: hypothetical protein NDAI_0B02730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-19   68.6   0.0    1.3e-18   67.4   0.0    1.6  2  D-ser_dehydrat  Putative serine dehydratase domain
    2.4e-07   30.6   0.0    3.4e-07   30.1   0.0    1.2  1  Ala_racemase_N  Alanine racemase, N-terminal domain


Domain annotation for each model (and alignments):
>> D-ser_dehydrat  Putative serine dehydratase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.8   1.6e+04      44      62 ..      80      96 ..      53     101 .. 0.54
   2 !   67.4   0.0   1.5e-22   1.3e-18       1      95 [.     306     411 ..     306     412 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.8
                    EEEEB-..EE-SS-EEEE- CS
  D-ser_dehydrat 44 egwvvsvrrlsdEhgiltl 62
                    ++    v+ +++  gil+ 
      CCD23308.1 80 NSIL--VSTIKEAKGILDY 96
                    2223..3477777777765 PP

  == domain 2  score: 67.4 bits;  conditional E-value: 1.5e-22
                     -EEEEEEEEEEETTTT.EEES--HHHH-S-S.S--BT-EEE-TTS........EEEEB-..EE-SS-EEEE--TT-...GGGS-TT-EEEEE-S- CS
  D-ser_dehydrat   1 AlavlatVvSrptarr.alvdaGskalslds.sgpgfgkvvagle........egwvvsvrrlsdEhgiltleees...addlrvGdvvrlipnH 82 
                     A +vl tVvS +++r  +l d G+++l++++ +++gfg +++ ++         +w   v+r+s+Ehgil+  +++   ++ l++G++v+++p+H
      CCD23308.1 306 AGTVLGTVVSSYESRMeILTDTGVMSLTRETsAYKGFGLCRDLSSimqdtrpnIEWY--VDRVSQEHGILKKYDAKgeqQELLPLGSKVAILPQH 398
                     568************99*************989999999997777999999555566..66**********98777998999************* PP

                     HHHHHTT-SEEEE CS
  D-ser_dehydrat  83 aCptvnlhdayvv 95 
                     aC+++ ++d y++
      CCD23308.1 399 ACIVMGQFDFYFI 411
                     **********987 PP

>> Ala_racemase_N  Alanine racemase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   3.8e-11   3.4e-07      11     178 ..      40     233 ..      23     263 .. 0.67

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 3.8e-11
                     HHHHHHSCTTSEEEEE-HHHHHTTHHHHHHH..HHHHTTESEEEESSHHHHH............HHHHTTSCSEEEEESC.STGGGHHHHHH... CS
  Ala_racemase_N  11 rrlralagpgaklmavvKanayghgavevar..alaeggadgfgvatleEal............elreagitapilvleg.fspeelaalae... 87 
                      +l + +g++  ++a+vK+     g  + +   ++ + g + + v+t++Ea                     ++i    +   p+ +++l +   
      CCD23308.1  40 HKLEDNVGKHISFRAHVKTHKTAQGTFKQLGhgVASSKGSNSILVSTIKEAKgildyqevmnldY------VKDIAFSLPaCVPSYIRELSHlsk 128
                     333344422445899999988877777766511334458*************9999995555552......444433333334444444444444 PP

                     ..TTEEEEESSHHHHHHHHHHHHH.TTS-EEEEEEBESSSSSSSBSC..HHHHHHHHHHHH...TTT.EEEEEEE-S-SST......TSTSHHHH CS
  Ala_racemase_N  88 ..ydltvtvdsleqlealaaaare.agkplrvhlkidtgmgRlGftp..eeleellealaa...lpg.lrleglmtHfasa......depdeete 167
                       + l v vd+ e+le l ++    ++ +  +++kid g +R G+++  +++  ll++l +   + + +++ g++ H +++      +e +++ +
      CCD23308.1 129 rvNYLRVFVDNIEHLENLRRFGPPsSNSKWSIFVKIDMGTHRAGIPTdnKDFLNLLKRLFSpdiQ-KiANCYGFYAHCGHSysarsvKEAANFLK 222
                     5456*****************9888999****************988667888888888875433.269999******99966655533335555 PP

                     HHHHHHHHHHH CS
  Ala_racemase_N 168 aqlarfeeale 178
                     +++ ++++a++
      CCD23308.1 223 EEIVAVNTAAK 233
                     56666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3060.51
//
Query:       CCD23309.1  [L=1517]
Description: hypothetical protein NDAI_0B02740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-11   42.3   8.7     0.0092   16.0   0.0    5.3  5  Kelch_4   Galactose oxidase, central domain
    7.1e-11   42.0   2.2    3.7e-06   27.0   0.0    5.0  5  Kelch_6   Kelch motif
    1.1e-09   37.7   0.1      0.012   15.1   0.0    3.8  3  Kelch_1   Kelch motif
      3e-06   27.0   0.5     0.0011   18.8   0.0    4.2  4  Kelch_2   Kelch motif
    1.5e-05   25.2   0.2       0.25   11.7   0.0    4.8  5  Kelch_3   Galactose oxidase, central domain
    3.1e-05   23.8   1.4      0.012   15.6   0.0    3.6  3  Kelch_5   Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.19   5.7e+02       6      21 ..      42      57 ..      39      58 .. 0.81
   2 ?    1.5   0.2       0.1   3.1e+02      27      44 ..      97     114 ..      91     120 .. 0.83
   3 !   16.0   0.0   3.1e-06    0.0092       2      41 ..     189     233 ..     188     240 .. 0.92
   4 !   11.5   0.0   7.6e-05      0.23      11      42 ..     260     291 ..     244     296 .. 0.81
   5 !   12.8   0.2   3.1e-05     0.092      16      45 ..     412     442 ..     406     447 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.19
     Kelch_4  6 satsipdgtiylfGGr 21
                +at + + +i+++GG 
  CCD23309.1 42 AATILARSNIFVHGGL 57
                57778889*******7 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.1
     Kelch_4  27 llndlylldlstntWrrl 44 
                 +++++++ldl ++tW r+
  CCD23309.1  97 ISSETFFLDLISRTWYRV 114
                 6899***********666 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 3.1e-06
     Kelch_4   2 RaghsatsipdgtiylfGGrgedg......tllndlylldlstntW 41 
                 R +hs+++  +  +y+fGG            + n+l++ldl t+tW
  CCD23309.1 189 RLFHSICYS-KSCLYIFGGLIVSPqngyelIATNELWKLDLRTKTW 233
                 899******.689********964799******************* PP

  == domain 4  score: 11.5 bits;  conditional E-value: 7.6e-05
     Kelch_4  11 pdgtiylfGGrgedgtllndlylldlstntWr 42 
                 +d +++++GG ++ +++   ++++++++n W+
  CCD23309.1 260 RDTKLVIVGGLNNLDQPIHKIDIFNITQNCWQ 291
                 4579*************************997 PP

  == domain 5  score: 12.8 bits;  conditional E-value: 3.1e-05
     Kelch_4  16 ylfGGrgedgtllndl.ylldlstntWrrlg 45 
                 +++GG ++ + +l+   +++d+++++W+rlg
  CCD23309.1 412 IIIGGFYSGTNALDFYcFVYDIPSGKWTRLG 442
                 68******99*****8799**********96 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.29   8.6e+02       1      23 [.      38      60 ..      38      78 .. 0.87
   2 ?   -1.2   0.2      0.96   2.9e+03      28      43 ..      99     114 ..      96     118 .. 0.83
   3 !   27.0   0.0   1.2e-09   3.7e-06       2      47 ..     189     240 ..     188     244 .. 0.91
   4 !    6.6   0.0    0.0033       9.8      11      43 ..     261     293 ..     258     302 .. 0.88
   5 ?    1.8   0.0      0.11   3.3e+02      31      44 ..     429     442 ..     412     448 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.29
     Kelch_6  1 praghslvsvggkiYifGGytds 23
                +r+g +++++ + i++ GG+t +
  CCD23309.1 38 CRTGAATILARSNIFVHGGLTIP 60
                7999****************986 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.96
     Kelch_6  28 nkvwvydpetksWeql 43 
                 +  +++d+++++W ++
  CCD23309.1  99 SETFFLDLISRTWYRV 114
                 56789********877 PP

  == domain 3  score: 27.0 bits;  conditional E-value: 1.2e-09
     Kelch_6   2 raghslvsvggkiYifGGytds......spylnkvwvydpetksWeqlpplp 47 
                 r++hs++   + +YifGG+  s        ++n +w++d++tk+W  l+  p
  CCD23309.1 189 RLFHSICYSKSCLYIFGGLIVSpqngyeLIATNELWKLDLRTKTWILLSKDP 240
                 89*****************9999**********************9998554 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0033
     Kelch_6  11 ggkiYifGGytdsspylnkvwvydpetksWeql 43 
                 + k++i+GG+++ +++  k+ ++++  + W+  
  CCD23309.1 261 DTKLVIVGGLNNLDQPIHKIDIFNITQNCWQSD 293
                 5699*********999999***********975 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.11
     Kelch_6  31 wvydpetksWeqlp 44 
                 +vyd+ +++W++l+
  CCD23309.1 429 FVYDIPSGKWTRLG 442
                 68********9975 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.2e-06     0.012       2      42 ..     189     236 ..     188     239 .. 0.94
   2 !    9.9   0.0   0.00018      0.54      11      40 ..     261     291 ..     260     292 .. 0.95
   3 !    8.1   0.1   0.00065       1.9      16      42 ..     413     441 ..     412     442 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.2e-06
                 BBSEEEEEETTEEEEEEEBCS.......SSBEEEEEEEETTTTEEEEE CS
     Kelch_1   2 ragagavvvggkiYviGGsdg.......gnalssvevyDpetntWrel 42 
                 r  ++ ++   ++Y++GG            a++ ++ +D++t+tW  l
  CCD23309.1 189 RLFHSICYSKSCLYIFGGLIVspqngyeLIATNELWKLDLRTKTWILL 236
                 67899****************************************766 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00018
                 TTEEEEEEEBCS.SSBEEEEEEEETTTTEEE CS
     Kelch_1  11 ggkiYviGGsdg.gnalssvevyDpetntWr 40 
                 ++k+ ++GG ++  ++ + + +++ ++n+W 
  CCD23309.1 261 DTKLVIVGGLNNlDQPIHKIDIFNITQNCWQ 291
                 789***************************5 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00065
                 EEEEBCS..SSBEEEEEEEETTTTEEEEE CS
     Kelch_1  16 viGGsdg..gnalssvevyDpetntWrel 42 
                 +iGG+ +  +     ++vyD  +++W++l
  CCD23309.1 413 IIGGFYSgtNALDFYCFVYDIPSGKWTRL 441
                 79******999999*************97 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.38   1.1e+03       4      45 ..      41     114 ..      38     116 .. 0.69
   2 !   18.8   0.0   3.7e-07    0.0011       5      48 ..     192     239 ..     189     240 .. 0.94
   3 ?    0.8   0.0      0.18   5.4e+02      11      21 ..     261     283 ..     259     299 .. 0.63
   4 ?    0.6   0.1      0.21   6.3e+02      15      45 ..     412     441 ..     409     442 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.38
     Kelch_2   4 ghsssvpggkiyvvGGa................................htdnpnlsssdvhvldlekhvWeev 45 
                 g ++   ++ i+v GG                                 ++ ++ + ss   +ldl +++W +v
  CCD23309.1  41 GAATILARSNIFVHGGLtiplnlegqinslqlqkelilyfskeknngisFENLNQWISSETFFLDLISRTWYRV 114
                 55566667788888888777777777777777777777777666666676777777777777888888888876 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 3.7e-07
     Kelch_2   5 hsssvpggkiyvvGGa....htdnpnlsssdvhvldlekhvWeevtpl 48 
                 hs++++ +++y++GG     +++  + +++ ++ ldl++++W +++ +
  CCD23309.1 192 HSICYSKSCLYIFGGLivspQNGYELIATNELWKLDLRTKTWILLSKD 239
                 9*****************9999999*****************998876 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.18
     Kelch_2  11 ggkiyvvGGa............h 21 
                 + k+++vGG             +
  CCD23309.1 261 DTKLVIVGGLnnldqpihkidiF 283
                 579*******4444444444444 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.21
     Kelch_2  15 yvvGGahtdnpnlsssdvhvldlekhvWeev 45 
                 +++GG+ ++++n   +   v+d  + +W+++
  CCD23309.1 412 IIIGGF-YSGTNALDFYCFVYDIPSGKWTRL 441
                 699***.9999999999999********986 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.3   3.9e+03       4      11 ..      51      58 ..      49      70 .. 0.82
   2 ?   -1.4   0.0         1   3.1e+03      14      48 ..     151     196 ..     147     196 .. 0.48
   3 !   11.7   0.0   8.2e-05      0.25       3      41 ..     200     245 ..     198     250 .. 0.80
   4 ?   -1.0   0.0      0.78   2.3e+03       3      33 ..     263     292 ..     262     304 .. 0.70
   5 !    6.3   0.0     0.004        12       6      35 ..     413     442 ..     410     450 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.3
     Kelch_3  4 lyifGGlg 11
                ++++GGl+
  CCD23309.1 51 IFVHGGLT 58
                89****98 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
     Kelch_3  14 gqdrlndvyvydl.dtn...tWaeiasl....pp...aRaghaata 48 
                 ++d++nd+  +d  d++   t+ e++s+     +    R +h++++
  CCD23309.1 151 NNDNNNDTNDVDDdDNDgneTYSEVGSThiiiESqlkERLFHSICY 196
                 5566666555544222244566666332222211224788888886 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 8.2e-05
     Kelch_3   3 rlyifGGlgddgqdrl.....ndvyvydldtntWaeiaslpp..aR 41 
                 +lyifGGl  + q+++     n+++ +dl t tW  ++  p    R
  CCD23309.1 200 CLYIFGGLIVSPQNGYeliatNELWKLDLRTKTWILLSKDPRiaRR 245
                 69********888888899***************977555555244 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.78
     Kelch_3   3 rlyifGGlgddg.qdrlndvyvydldtntWae 33 
                 +l+i+GGl+  +  ++ +  + +++  n W++
  CCD23309.1 263 KLVIVGGLN--NlDQPIHKIDIFNITQNCWQS 292
                 589****99..556666777777777777774 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.004
     Kelch_3   6 ifGGlgddgqdrlndvy..vydldtntWaeia 35 
                 i+GG+   ++++  d+y  vyd+ +++W++++
  CCD23309.1 413 IIGGFY--SGTNALDFYcfVYDIPSGKWTRLG 442
                 89****..8888888887799********984 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.013        39       5      24 ..      39      58 ..      38      69 .. 0.92
   2 !   15.6   0.0   3.9e-06     0.012       5      41 ..     189     230 ..     188     231 .. 0.86
   3 ?   -0.9   1.0      0.61   1.8e+03      19      42 .]     413     436 ..     409     436 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.013
     Kelch_5  5 RaghcavtvsekiYvyGGkv 24
                R+g++++ + ++i+v+GG +
  CCD23309.1 39 RTGAATILARSNIFVHGGLT 58
                899999************86 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 3.9e-06
     Kelch_5   5 RaghcavtvsekiYvyGGkv.....grdgsvsddvyvLdlps 41 
                 R  h++++ ++ +Y++GG +     g + +++++++ Ldl++
  CCD23309.1 189 RLFHSICYSKSCLYIFGGLIvspqnGYELIATNELWKLDLRT 230
                 7889****************86644278888*********98 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.61
     Kelch_5  19 vyGGkvgrdgsvsddvy..vLdlpsf 42 
                 ++GG+ +  g    d+y  v+d+ps+
  CCD23309.1 413 IIGGFYS--GTNALDFYcfVYDIPSG 436
                 7888885..8889999999*****95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.98u 0.26s 00:00:01.24 Elapsed: 00:00:00.46
# Mc/sec: 9960.59
//
Query:       CCD23310.1  [L=246]
Description: hypothetical protein NDAI_0B02750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-10   41.0   4.5    2.2e-10   40.5   4.5    1.2  1  Yip1      Yip1 domain


Domain annotation for each model (and alignments):
>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   4.5   1.2e-14   2.2e-10       2     148 ..      62     221 ..      61     223 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 1.2e-14
        Yip1   2 lldPrevfrrlkkepp.......................ilrapdlallllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgl 77 
                  +d++e+ +rlk++ +                       i+  +dl+ +l +++ + l +  +                  +sl+++i+++++   ++l
  CCD23310.1  62 KRDVSEINSRLKQVVYphfptrtllptsepgnsiesnvdISGHSDLWAPLTFIILYSLCVSHA------------------KSLFSSIFVSCW---FIL 139
                 578999999999999999999999999999999999999************************..................9***********...9** PP

        Yip1  78 lllalllhliakllg...gkgsfkqtlsvvgyallPlilgaliaillllllgt.............llllvgllaliWslvllylgl 148
                 l++al+l l          ++s+  ++s++gy+l+P+++ a+++ ++l+l+               l ll+++++l Ws+ +++l +
  CCD23310.1 140 LVMALHLRL-----TkpyDNISLISYISLSGYCLFPQVINAFLSQVILPLFLKanyntwiirvltiLKLLFLAVCLKWSVTAITLVT 221
                 *********.....55789999**********************************************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1963.42
//
Query:       CCD23311.1  [L=1075]
Description: hypothetical protein NDAI_0B02760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-28   97.8   0.1    1.7e-27   96.4   0.1    1.7  1  DUF3337       Domain of unknown function (DUF3337)
    3.5e-06   27.6   8.7       0.31   12.0   0.3    5.6  5  WD40          WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.014   15.4   1.7      0.082   12.9   0.6    2.4  2  SOAR          STIM1 Orai1-activating region
       0.18   12.2   1.6       0.57   10.5   1.6    1.9  1  MbeB_N        MbeB-like, N-term conserved region
          2    7.8   4.2       0.44    9.9   0.3    1.9  2  mRNA_decap_C  mRNA-decapping enzyme C-terminus


Domain annotation for each model (and alignments):
>> DUF3337  Domain of unknown function (DUF3337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.1   4.7e-31   1.7e-27      34     172 .]     910    1070 ..     895    1070 .. 0.91

  Alignments for each domain:
  == domain 1  score: 96.4 bits;  conditional E-value: 4.7e-31
     DUF3337   34 vdlleevlPsWllevllenk.ipikesvkisFvLlplpssklked..................................klpelekknsrLtanrmL 95  
                   ++ e+ lP W ++ l++n  i   e +k++F++ p+ +++ +                                     lp+++++n++L a  m+
  CCD23311.1  910 FEQFERNLPYWFAKTLFKNVkIVEIEQPKVNFIIAPWVGNREE-AlngtstdskgnsndtqfhyrlkfgkskeqtlastDLPKVSDANAKLIAPGMI 1005
                  567899************96355556***********776554.2699************************************************* PP

     DUF3337   96 rvrKileyvaeklekktkeskasseeeekeeedkklkpeeklellCndqvlpptmtLatvktfiWkssgDlvlhYrl 172 
                  +v+Ki  yv ++++ kt+e+ka            k +p+ +lellC+dqvl+++mtL tv+t +Wks+g++++++r+
  CCD23311.1 1006 KVKKIKLYVIDRFDGKTPEMKA------------KQDPSIWLELLCRDQVLDNDMTLSTVRTLYWKSQGEIIINFRR 1070
                  **************99999996............457999***********************************96 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0022       7.9      10      36 ..      19      50 ..      12      50 .. 0.81
   2 ?    1.4   0.1       0.2     7e+02       4      37 ..      61      95 ..      58      96 .. 0.68
   3 !   12.0   0.3   8.6e-05      0.31       3      38 .]     107     149 ..     105     149 .. 0.78
   4 ?   -0.9   0.0         1   3.7e+03      25      37 ..     193     205 ..     168     206 .. 0.76
   5 !    6.9   0.0    0.0036        13      21      38 .]     233     249 ..     213     249 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0022
                S.SS....EEEEEEETTSSEEEEEETTSEEEE CS
        WD40 10 H.ss....vtslafspdgawlasGsdDgtvri 36
                H +s    ++ + ++pd +++++G++Dg++ i
  CCD23311.1 19 HkNShilpISKIYTCPDLNLFLTGGRDGSIII 50
                654456668999999**************976 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.2
                EEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEE CS
        WD40  4 lrtltGH.ssvtsla.fspdgawlasGsdDgtvriW 37
                 + l  H ++vt+l   +   ++++ ++ D ++ ++
  CCD23311.1 61 KKRLQVHsDWVTDLVrIPGTTKFISVSH-DFSIVLF 95
                5667889566****96666666665555.9999775 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 8.6e-05
                 EEEEEESS.SSEEEEE......EETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtsla......fspdgawlasGsdDgtvriWd 38 
                 ++++   H + + ++       ++++  w+a+++ D++++iW+
  CCD23311.1 107 NMKIVGSHdDYIKCIVpllsmsNDDSEFWFATAGLDKKIKIWK 149
                 56777889444877777777768888888**9999*******6 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1
                 EEEEETTSEEEEE CS
        WD40  25 lasGsdDgtvriW 37 
                 l+ G+ Dg++ ++
  CCD23311.1 193 LVVGDADGNIVLY 205
                 556999****987 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.0036
                 TSSEEEEEETTSEEEEEE CS
        WD40  21 dgawlasGsdDgtvriWd 38 
                 + ++l+++s Dg + +Wd
  CCD23311.1 233 STKLLTTAS-DGIINLWD 249
                 445688999.*******9 PP

>> SOAR  STIM1 Orai1-activating region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.6   2.3e-05     0.082      20      71 ..     535     586 ..     528     590 .. 0.92
   2 ?    0.1   0.0      0.23   8.1e+02      39      65 ..     727     753 ..     714     778 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.3e-05
        SOAR  20 kylnkkkqeaekqlqeAkeeveklkkkrssllgslrlahssslddvdkkile 71 
                 + l+kkk+  ++q + Ak++ + + k r++++++l + +s+  d+ d++  +
  CCD23311.1 535 RILTKKKSIHHHQKDTAKNSKNSIGKHRNNVFSKLNSSASNLADSYDSSFAS 586
                 678999999**************************************98765 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.23
        SOAR  39 eveklkkkrssllgslrlahssslddv 65 
                 ++ekl+   ss + s+ +++s  ++++
  CCD23311.1 727 NLEKLRNEESSRMNSISSINSPMMSSI 753
                 689999999999999999998776655 PP

>> MbeB_N  MbeB-like, N-term conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.6   0.00016      0.57      18      51 ..     546     579 ..     540     579 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
      MbeB_N  18 qaeSteemvksafekheksvkeaLkesekkisda 51 
                  ++ t++  k+ + kh+++v + L++s+ +++d+
  CCD23311.1 546 HQKDTAKNSKNSIGKHRNNVFSKLNSSASNLADS 579
                 577799999**********************985 PP

>> mRNA_decap_C  mRNA-decapping enzyme C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.4       2.2   7.7e+03      16      21 ..     304     309 ..     304     309 .. 0.90
   2 ?    9.9   0.3   0.00012      0.44      22      41 ..     767     786 ..     765     787 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.2
  mRNA_decap_C  16 LIknDs 21 
                   LI+nD+
    CCD23311.1 304 LIQNDD 309
                   9****6 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00012
  mRNA_decap_C  22 sFLntIHeAYlqslskdlsn 41 
                   + L+ IH+AY+q ++++ s+
    CCD23311.1 767 DLLDEIHNAYIQEYNNSNSS 786
                   5699***********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1075 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1013  (0.0565006); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.39
# Mc/sec: 8246.58
//
Query:       CCD23312.1  [L=101]
Description: hypothetical protein NDAI_0B02770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-24   86.0   0.0    2.1e-24   85.7   0.0    1.1  1  CENP-S       CENP-S protein
    1.9e-09   37.6   0.0    2.2e-09   37.4   0.0    1.1  1  CENP-T_C     Centromere kinetochore component CENP-T histone 
    4.6e-05   23.8   0.0    5.4e-05   23.6   0.0    1.1  1  Histone      Core histone H2A/H2B/H3/H4
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.017   15.2   0.0    1.2  1  TFIID-31kDa  Transcription initiation factor IID, 31kD subuni
      0.048   13.7   0.0      0.069   13.2   0.0    1.3  1  Bromo_TP     Bromodomain associated


Domain annotation for each model (and alignments):
>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.0   5.8e-28   2.1e-24       1      75 [.       8      86 ..       8      87 .. 0.90

  Alignments for each domain:
  == domain 1  score: 85.7 bits;  conditional E-value: 5.8e-28
      CENP-S  1 erLKaalwysvgkiveeeaa....ekeveatkqfiaaltelvykqlenlakDLeaFakHAkRstittdDvlLlaRrnes 75
                erLKa+lw++v k v+e       + +++++++fi+al+ l+y ql ++++DLe+Fa+HA+R tit dD++Ll+R+++ 
  CCD23312.1  8 ERLKAELWCAVDKQVKELVPslnvKGNITYSPKFINALMSLTYLQLTDIGTDLELFANHAGRGTITRDDLMLLLRKTPL 86
                69***********9999544233478888***********************************************985 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   6.1e-13   2.2e-09      27      84 ..      34      91 ..      12     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 6.1e-13
    CENP-T_C 27 kaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrkvtskt 84
                +   +++ ++al++ +   +  +g+DLe +a+HagR ti ++D++lL++++ ++++ +
  CCD23312.1 34 NITYSPKFINALMSLTYLQLTDIGTDLELFANHAGRGTITRDDLMLLLRKTPLLQEMV 91
                4445678899****************************************88877655 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.5e-08   5.4e-05      66     130 ..      17      83 ..       2      84 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHHH...TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHH CS
     Histone  66 pfaRvvreivk..sekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArrl 130
                  +++ v+e+v+  + k ++ +s + ++al +++   l+++ ++ +l a+ha R Tit+ D+ l +r+
  CCD23312.1  17 AVDKQVKELVPslNVKGNITYSPKFINALMSLTYLQLTDIGTDLELFANHAGRGTITRDDLMLLLRK 83 
                 58899********************************************************998885 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   4.7e-06     0.017      16      65 ..      27      79 ..      18      99 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.7e-06
  TFIID-31kDa 16 aslgvt...eyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrl 65
                  sl+v+    y+++ ++ L+ ++y   +++ +d +++a+ha++ +++ dd+ l
   CCD23312.1 27 PSLNVKgniTYSPKFINALMSLTYLQLTDIGTDLELFANHAGRGTITRDDLML 79
                 55555544479***************************************987 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.9e-05     0.069      28      68 ..      41      81 ..      36      90 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.9e-05
                HHHHHHHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHH CS
    Bromo_TP 28 aLEtLteiaqkYirelgeqaksfaehagRseptlkDvvltL 68
                 +++L+ ++   ++ +g + + fa+hagR + t  D++l L
  CCD23312.1 41 FINALMSLTYLQLTDIGTDLELFANHAGRGTITRDDLMLLL 81
                678888888666789**********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 852.57
//
Query:       CCD23313.1  [L=379]
Description: hypothetical protein NDAI_0B02780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.18   11.7   0.7       0.38   10.7   0.7    1.5  1  RNA_pol_Rpb6  RNA polymerase Rpb6


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb6  RNA polymerase Rpb6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.7   2.1e-05      0.38       6      19 ..      83      96 ..      82      97 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.1e-05
                  S--HHHHHHHHHHH CS
  RNA_pol_Rpb6  6 vltrYelvriaakR 19
                  +++rY+++ri++kR
    CCD23313.1 83 INNRYTIARIISKR 96
                  68***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3077.41
//
Query:       CCD23314.1  [L=988]
Description: hypothetical protein NDAI_0B02790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-88  295.5  20.8    3.6e-88  295.5  20.8    1.7  2  RSN1_7TM  Calcium-dependent channel, 7TM region, putative pho
      1e-42  145.5   5.3    2.5e-41  141.0   3.5    3.0  2  RSN1_TM   Late exocytosis, associated with Golgi transport
    1.5e-26   92.4   0.6    4.1e-26   91.0   0.6    1.8  1  PHM7_ext  Extracellular tail, of 10TM putative phosphate tran
    1.4e-24   87.3   0.7    2.2e-24   86.6   0.7    1.4  1  PHM7_cyt  Cytosolic domain of 10TM putative phosphate transpo


Domain annotation for each model (and alignments):
>> RSN1_7TM  Calcium-dependent channel, 7TM region, putative phosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.9       1.3   5.9e+03      58      58 ..     149     149 ..      96     177 .. 0.53
   2 !  295.5  20.8     8e-92   3.6e-88       1     274 []     388     661 ..     388     661 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.3
    RSN1_7TM  58 P 58 
                 +
  CCD23314.1 149 S 149
                 1 PP

  == domain 2  score: 295.5 bits;  conditional E-value: 8e-92
    RSN1_7TM   1 rklivtlllvlliifwiipvafvgllsnletltkvlpflkkilelskkllsvvtgllPtlllslllallpiilrllsklqGalsrselelsvvskyfaF 99 
                 ++++++ l+v+liifw+ipva+vg++sn++ lt+++pflk+i++l++ l++++tg+lPtl+l++l++llp+++++  +l+G+l++ e++++++++y+aF
  CCD23314.1 388 KRILANSLMVALIIFWAIPVAVVGCISNINFLTEKVPFLKFINNLPNFLMGLITGILPTLMLAVLMSLLPPFIKMAGTLSGCLTKLETDQYCQKWYYAF 486
                 578999********************************************************************************************* PP

    RSN1_7TM 100 lvvnvFlvftlagtalslleeiidnptsipkllaeslpkasnFfityillqglagaaleLlqlvklilflikrkflsktprdlaerytkppsfdygtey 198
                 +v++vF+v+tla++a++++e+ii +p s+++lla++lpkasnF+i y+llqgl++ ++ Llq  +l+l+  ++++l++tpr++++ry+++++ d g  y
  CCD23314.1 487 QVIQVFIVTTLASSASATVEAIIRDPSSAMTLLANNLPKASNFYIAYFLLQGLTVPSGSLLQALNLVLQNTMGRILDSTPRQKWKRYNTLSKPDMGVIY 585
                 *************************************************************************************************** PP

    RSN1_7TM 199 pkvllifvialiYsviaPlilpfaliyfllgylvykyqllyvydtkyesgGklwpralnrllvglvlfqllliglf 274
                 p++ ++++i + Ys+iaPl+l+f++i+++l y++y y+l +v   +++ +G+ +pral++++vg++l++++l+glf
  CCD23314.1 586 PTMEILVCIYISYSIIAPLLLVFSTIALFLMYIAYLYNLNFVLGFSPDFRGRNYPRALFQVFVGIYLSEVCLVGLF 661
                 **************************************************************************98 PP

>> RSN1_TM  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   3.5   5.7e-45   2.5e-41       1     156 []      12     163 ..      12     163 .. 0.97
   2 ?    2.6   0.0     0.023     1e+02     119     151 ..     374     406 ..     358     409 .. 0.84

  Alignments for each domain:
  == domain 1  score: 141.0 bits;  conditional E-value: 5.7e-45
     RSN1_TM   1 alltslvinlvlalvflllFlilRkknkrvYaprtylkg....eeertpplpqkglfgWipallkisdeeilekaGLDayvflrflkmlikiflvlavl 95 
                 a++tsl+i+ ++al+f++lFl+lR++n+r Y+prt+++     eeert++ p +g+f+W+p ll  +++ ++++ +LD+y+flr++ +++   l+l+++
  CCD23314.1  12 AFVTSLIIYGIIALIFIWLFLTLRPRNRRTYEPRTLTDIqtikEEERTDEVP-SGYFQWVPFLLGKPHSFLIQHTSLDGYLFLRYIGIFATTSLLLCFI 109
                 69*********************************998799*9999999999.********************************************** PP

     RSN1_TM  96 alivLlPvnatggegedskesksgldklsisnvsegsnrlwahvvvayiftglvlyllyre 156
                  +++LlPvnat+g++       +g++ ls++nv +++nr++ahv++++i++gl+ y++y+e
  CCD23314.1 110 LFPILLPVNATNGNNL------KGFELLSFANV-TNKNRFFAHVFLSWIVFGLITYIIYKE 163
                 ***************9......79*********.999**********************97 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.023
     RSN1_TM 119 gldklsisnvsegsnrlwahvvvayiftglvly 151
                 +++++++s  +++s+r+ a  +++ +++++++ 
  CCD23314.1 374 NWSNMKLSSAERKSKRILANSLMVALIIFWAIP 406
                 56788899999*******************985 PP

>> PHM7_ext  Extracellular tail, of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.6   9.1e-30   4.1e-26       1      93 []     889     981 ..     889     981 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 9.1e-30
    PHM7_ext   1 FlkpeiyasyaalrkllpeeyneeeeeyeeelekkaYlhPavtskepllWiprDpagvSkqeieetek.vigisdegaeldekgkvewteaPpd 93 
                 F++p+  + ++++r++lp+ yn++  ey++e+ ++aY++P v++k p++Wi++Dp+gvSkq+iee e+ +++is ++ae++ekgk ++t +Ppd
  CCD23314.1 889 FFNPKNSYPFEKVRTRLPHVYNTT-VEYDQEYLTSAYTDPIVNEKDPIIWICKDPMGVSKQQIEEAEDsGAKISHDFAEYNEKGKSTFTFNPPD 981
                 9***********************.***************************************7776266**********************7 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.7     5e-28   2.2e-24       1     176 []     186     377 ..     186     377 .. 0.86

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 5e-28
    PHM7_cyt   1 srTvlvtgiPkelrseeklkeffeelypgkvvesvqivrdvkkldklveerekavrkleaalskykkngkklpkkr....................... 76 
                 srTv++t++ ++  +e +l++ f+++       ++++++d+++l+k ++er k+ +kle  l+k + ++ k+  ++                       
  CCD23314.1 186 SRTVMITELDPSIAQEGELEKRFSKA------VNINFAHDLSHLEKHINERRKVSMKLESSLNKVIDKAVKR-YYKynekkpeklfgpdnnkpqanlet 277
                 79*********************997......3899**************************9998877554.344678999***************** PP

    PHM7_cyt  77 .......pthklg.flglkligkkvdaidyyrekleeldeeieeerekvkk.kplgaaFvtfesersaaavakqakcaaqiqqssnptlkpkkwtvelA 166
                        p+h++   ++++ +g+kvd+i++++e+l +l++++  +++k +k ++l+aaF++f+++ +a++++++      i+  +     pk++  +l 
  CCD23314.1 278 yvpyysrPSHRINtRFPFFPFGEKVDTIHHCTEELAQLNDKVHTQQRKWDKnEKLPAAFIQFDTQLEAQECFQS------IEGLL----GPKSFGRKLI 366
                 ************955677779***************************966379****************9732......33334....4455555554 PP

    PHM7_cyt 167 Pe.PrDviWeN 176
                    P+D++W+N
  CCD23314.1 367 NSvPEDINWSN 377
                 333*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (988 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1195  (0.0666518); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.25s 00:00:01.03 Elapsed: 00:00:00.39
# Mc/sec: 7577.51
//
Query:       CCD23315.1  [L=937]
Description: hypothetical protein NDAI_0B02800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-20   72.6   1.8    5.3e-20   71.7   0.7    2.0  2  ATG19_autophagy  Autophagy protein Atg19, Atg8-binding


Domain annotation for each model (and alignments):
>> ATG19_autophagy  Autophagy protein Atg19, Atg8-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0     0.095   1.7e+03     127     154 ..     105     132 ..      68     163 .. 0.61
   2 !   71.7   0.7     3e-24   5.3e-20       9     187 ..     707     887 ..     703     911 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.095
  ATG19_autophagy 127 qlGphelgikeyKelkfnlrglleeftl 154
                      ++  ++ + +++K++ f+ +g  +ef l
       CCD23315.1 105 PVTINDAQVGGQKIYAFYDKGKYNEFNL 132
                      3333455666666666666666666654 PP

  == domain 2  score: 71.7 bits;  conditional E-value: 3e-24
  ATG19_autophagy   9 pelvdFFskikTesqLeevmngYekYekllqkfdgkkkeles..vnevealkqiasdesskeakeelatendrsLrvevtkkdnlleFklfneg 100
                       e  dF s +kT+++L++v+ngY k+++      +++ e+++   +  + + q++++++ ++ k+  +  n   L+v++ ++ + ++F+l n+g
       CCD23315.1 707 DETHDFISTLKTSEDLKKVVNGYPKFKEWRYIGGKDESEIDErfSSKDNMIAQVSINHELENIKKPEEFLNSTALEVTMERRYKDIKFTLTNRG 800
                      6778*********************8888777777777777665566677889999999999999999999*********************** PP

  ATG19_autophagy 101 dkivpgdlkleFqdeaser.va..ikinLqlGphelgikeyKelkfnlrglleeftlgqpckikivdqsddviftgkqsespeiklkapl 187
                      ++++pg+ k++ q ++++  va   +++L++Gph l i+++K l ++ + ++++    +   +++   +d  +f+  + + ++ +l +p 
       CCD23315.1 801 KSDLPGNSKFVVQYSIEHHgVAhvADVTLDMGPHKLLIGSKKHLLWSPPCPIHNGI--VVDVVELST-EDGFVFYSGKVHDNNFELSTPA 887
                      **********977666544133677899*******************999999977..333344444.4455666666666777777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 6590.32
//
Query:       CCD23316.1  [L=353]
Description: hypothetical protein NDAI_0B02810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2790.22
//
Query:       CCD23317.1  [L=2965]
Description: hypothetical protein NDAI_0B02820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-21   74.8   2.2    3.3e-12   46.5   0.3    3.5  3  RasGAP    GTPase-activator protein for Ras-like GTPase
  ------ inclusion threshold ------
      0.029   14.5   0.8       0.16   12.1   0.8    2.3  1  ParcG     Parkin co-regulated protein


Domain annotation for each model (and alignments):
>> RasGAP  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   6.6e-10   5.9e-06       2      65 ..    1612    1673 ..    1611    1681 .. 0.92
   2 !   46.5   0.3   3.7e-16   3.3e-12     112     208 .]    1688    1779 ..    1673    1779 .. 0.92
   3 ?   -4.1   0.0       1.2     1e+04      31      55 ..    2593    2617 ..    2579    2621 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 6.6e-10
      RasGAP    2 iseliklElessenpndllrsnsvvsklleeytkrpegqeyLkkilkpllqkilekedlnlelD 65  
                  +selik E+e+ + p d+lr ns+ ++ l    +  +g e+L k+l p+lqk+l +++ ++e+ 
  CCD23317.1 1612 VSELIKDEIEHVSRPMDILRRNSCATRALSLLSRT-KGNEFLIKALRPVLQKVL-ENKDFFEVE 1673
                  699*****************************999.*****************9.777777875 PP

  == domain 2  score: 46.5 bits;  conditional E-value: 3.7e-16
      RasGAP  112 kLkelvneildsIfksleqlPvgiRiickqirekvkekfpdaseeeilnligsflflrfliPaivnPklfglvdkqiseeqrrnLtliaKllqnlan 208 
                   +++++  +l sI++ l ++P +  +ic+ i++ +k+kfpd+     + + gsf+flr ++Pa+v+P+  +++    + +++r  + +aK++qn+an
  CCD23317.1 1688 LFEKYMTDLLASITEALPYFPPEFFYICQTIYTATKKKFPDYA----YIAAGSFVFLRLICPALVSPESENII-EISNSDEKRPFISLAKVIQNIAN 1779
                  56789999*******************************9776....99************************.666888899999*********97 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 1.2
      RasGAP   31 eeytkrpegqeyLkkilkpllqkil 55  
                  ++yt    +++ L++ lk++ q ++
  CCD23317.1 2593 QTYTSEMFCRSLLQETLKTIAQPVV 2617
                  6788888888888888888888876 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.8   1.8e-05      0.16      73     145 ..    1306    1386 ..    1290    1406 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.8e-05
       ParcG   73 kilpvlpklilplkeaLntrdeevies.....aLkvlqklvkaseligeaLvpyyrqlLpvlnlfknkr...vnlgdkidy 145 
                    + +l +li  l++ L+ +d++ i++     +++v+++l+++ + i+++   yyr+++ +++++k+ +    +l+ k +y
  CCD23317.1 1306 YNFILLQQLIAVLRSILKRSDDQKIMVifsidVIDVISQLMRIIKGISKSSRKYYRAIIYMTKVIKALEyseNSLALKHHY 1386
                  4566899***********9999988762222357899**********************9999888754221445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2965 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.28u 0.33s 00:00:01.61 Elapsed: 00:00:00.50
# Mc/sec: 17691.05
//
Query:       CCD23318.1  [L=271]
Description: hypothetical protein NDAI_0B02830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-19   69.3   0.3    1.2e-18   68.2   0.0    1.7  2  RNase_T   Exonuclease


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.62   1.1e+04      25      51 ..      56      77 ..      45      89 .. 0.60
   2 !   68.2   0.0   6.7e-23   1.2e-18       1     165 []     100     251 ..     100     251 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.62
                EEETTCCEEEEEEEEEEEHSSHCSSSH CS
     RNase_T 25 sidggeneigetfhfyvkptelakltd 51
                ++++   e+g+ f+f  +p+    +++
  CCD23318.1 56 KLNK---EEGKVFEFKTAPDTI--ISE 77
                3333...346777777777766..444 PP

  == domain 2  score: 68.2 bits;  conditional E-value: 6.7e-23
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCCEEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETTTCEEEESS CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggeneigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahnaafdvgfl 99 
                 +++D+E++g+ +    +  ++a+isi++ +  ++  ++ yvkp e+  +td+ t ++gi  e+ ++a sfke+ ++ +++l+ +++lv+h +  d++ l
  CCD23318.1 100 IAMDCEFVGVGP--EGKESALARISIVNFF--GHVIMDEYVKPREK--VTDWRTWVSGIKSEHMKNAISFKEAQKKTADILK-GRILVGHAVKHDLEAL 191
                 689********9..688899**********..68889*********..**********************************.99******99999999 PP

                 HHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSS.TSSHHHHHHHHHHHH CS
     RNase_T 100 raadkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgr.aHrAldDaeataklf 165
                      +i+ ++   ++ +l++    ++++++ ++ sl+kl +++++ e+++ +H++++Da+at+ l+
  CCD23318.1 192 LLSHPKIMIRD---TSRHLPY----RQKYAKGKSPSLKKLTKEVLKLEIQTgEHSSVQDAQATMLLY 251
                 99999998774...4455555....5668899999****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1942.38
//
Query:       CCD23319.1  [L=1178]
Description: hypothetical protein NDAI_0B02840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-34  117.5   0.2      4e-33  114.5   0.1    2.6  2  CRIM      SAPK-interacting protein 1 (Sin1), middle CRIM doma
    2.3e-31  108.3   6.0    1.1e-30  106.2   0.5    3.3  3  SIN1_PH   SAPK-interacting protein 1 (Sin1), Pleckstrin-homol
  ------ inclusion threshold ------
      0.036   14.3   1.1       0.12   12.6   0.2    2.3  2  TUG-UBL1  TUG ubiquitin-like domain


Domain annotation for each model (and alignments):
>> CRIM  SAPK-interacting protein 1 (Sin1), middle CRIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.1   6.7e-37     4e-33       1     141 []     657     805 ..     657     805 .. 0.94
   2 ?   -0.7   0.0      0.24   1.4e+03      30      64 ..     863     897 ..     834     927 .. 0.70

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 6.7e-37
                 S--SSS---SSSS.-..SSSCCCCCGCCTTTT..-.T-EEECCE-TT-SSTTS.---CCC-SSSCTCCCCCCCCCCCHCHT-SS-SS....S.CGGCST CS
        CRIM   1 kSlLsalLeakke.k..senpleeyaalsgkg.es.sslklkiyvpfskkpsvkplevkvrkdatvaevIGlaLykyveekrepeldeel.e.eeklnv 92 
                 +S+Ls+l+++kke +  s++ l+++++++g++  + ++++l++y++ s k +++p++ kvrk+a+++evIG++Ly y++  ++ ++ ++  + ee +n+
  CCD23319.1 657 NSQLSSLFNRKKErSgiSTDVLSYFTFVAGTKvPPyEAMDLDVYIQGSVKYKKHPFKTKVRKSAKIFEVIGFILYLYCNAYKPADFGKDGfTiEELINP 755
                 59*******9999445566999**********6457************999989*********************************8889789***** PP

                 TCCEECCE-CT--EECC.CCCC-TTSCCHHH-BSEEEEEE-SCHHHCCHC CS
        CRIM  93 nrwtLriveeDgevded.FPaldrtrpiskfsfdelaLveaseeeveene 141
                 n++ L iv+eDge++ed F++ldr+r ++++s++e++L++a e+e ++n+
  CCD23319.1 756 NNFLLSIVDEDGEPFEDnFGKLDRKRLMQSVSDNEVVLCRAAETEKQNNQ 805
                 **********************************************9996 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.24
                 .-T-EEECCE-TT-SSTTS.---CCC-SSSCTCCC CS
        CRIM  30 essslklkiyvpfskkpsvkplevkvrkdatvaev 64 
                 +++++++++++ ++ +p+++ ++++v+ + +++++
  CCD23319.1 863 ANKTIETRVFLYPNLNPKFNYTDINVSLTSNINDI 897
                 34888888888888888888888888877777774 PP

>> SIN1_PH  SAPK-interacting protein 1 (Sin1), Pleckstrin-homology
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.012        69      53     107 ..     622     729 ..     580     732 .. 0.86
   2 ?   -3.8   0.0       2.7   1.6e+04      15      35 ..     923     944 ..     911     955 .. 0.63
   3 !  106.2   0.5   1.8e-34   1.1e-30       2     109 ..    1068    1171 ..    1067    1172 .. 0.96

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.012
     SIN1_PH  53 yhidsvvhckiserksskalfrivvkk......................................................sssefKrydfeadsakeA 97 
                  +i+++++ + s+r++sk +++i   +                                                       s ++K++ f ++ +++ 
  CCD23319.1 622 RSISEIAKSDHSSRRNSKEVLQIEKLNeiprrkplnsqlsslfnrkkersgistdvlsyftfvagtkvppyeamdldvyiqGSVKYKKHPFKTK-VRKS 719
                 47999*****************999889999999999999999999999999999999999999999999999999999999999999999999.8888 PP

     SIN1_PH  98 eeIvnkinki 107
                 ++I + i  i
  CCD23319.1 720 AKIFEVIGFI 729
                 8888877666 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.7
     SIN1_PH  15 laksevtLaIdgek.ieidpvk 35 
                 l+ ++ +L +dg++ +ei+   
  CCD23319.1 923 LNLNDTVLRLDGNYkVEIISKR 944
                 6667778888877547766544 PP

  == domain 3  score: 106.2 bits;  conditional E-value: 1.8e-34
     SIN1_PH    2 lyksyrvyikqkm..laksevtLaIdgekieidpvknkkkatkfwaksqKtvsyhidsvvhckiserksskalfrivvkksssefKrydfeadsake 96  
                  +y++y+v+++q+m  ++k+e+tLaIdg++i+i+p + +++    w+++ Kt+s+hi++v+ +k s+r +    f+i+vk+ +++ Kry+fea s++e
  CCD23319.1 1068 AYHRYKVWRRQQMsfISKHERTLAIDGDYIYIVPPEGRMH----WHENVKTKSLHISQVILVKKSKRMPD--QFKIFVKRGQDDIKRYYFEAVSVEE 1158
                  69************99*********************765....5699**********************..************************* PP

     SIN1_PH   97 AeeIvnkinkile 109 
                  ++eIv++++++l+
  CCD23319.1 1159 CTEIVTRLQNLLN 1171
                  **********986 PP

>> TUG-UBL1  TUG ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.46   2.7e+03       1      22 [.     705     726 ..     705     727 .. 0.90
   2 ?   12.6   0.2     2e-05      0.12       2      51 ..     878     928 ..     877     932 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.46
    TUG-UBL1   1 itynfrrfkvkvtpnttlndvL 22 
                 ++y+ + fk kv ++  + +v+
  CCD23319.1 705 VKYKKHPFKTKVRKSAKIFEVI 726
                 689999*********9999986 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2e-05
    TUG-UBL1   2 tynfrrfkvkvtpnttlndvLeeackkfklddsasytLk..hnnkpldlslp 51 
                 +++f+ + + v+ ++ +nd+L + c+  +l d+++y Lk   +n  l+l+++
  CCD23319.1 878 NPKFNYTDINVSLTSNINDILVKYCRMKNL-DPNEYSLKipDKNYVLNLNDT 928
                 67899999**********************.999*****7566666777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1331  (0.0742373); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 7791.96
//
Query:       CCD23320.1  [L=66]
Description: hypothetical protein NDAI_0B02850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-22   78.5   0.0      4e-22   78.4   0.0    1.0  1  ATP19     ATP synthase subunit K
  ------ inclusion threshold ------
      0.042   14.2   0.0      0.048   14.0   0.0    1.0  1  MKT1_N    Temperature dependent protein affecting M2 dsRNA re


Domain annotation for each model (and alignments):
>> ATP19  ATP synthase subunit K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   4.4e-26     4e-22       1      67 [.       1      64 [.       1      65 [. 0.97

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 4.4e-26
                XXXX---STTSS--S-SHHHHHHHHH--XXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX CS
       ATP19  1 MgaaYtIaGravkshyLAlgtLgttglivylamggskkkkaaaappinasssdEedfIknFlaeaek 67
                Mg+aY+I+Gr+v+shyLA+gt+g++ l+++++  g+kk+k    ++ina s dE++f++++l+e+++
  CCD23320.1  1 MGSAYQIMGRSVPSHYLAMGTIGLVSLCILPSLVGGKKEK---VASINAISDDEDAFVRKYLQEHKT 64
                9***************************************...67*******************975 PP

>> MKT1_N  Temperature dependent protein affecting M2 dsRNA replication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.3e-06     0.048       5      65 ..       5      64 ..       3      66 .] 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.3e-06
      MKT1_N  5 heylgqrLPeelyyylsrGligprilnaltsgelieeppldggdseeYrklvtdllteire 65
                ++++g ++P+ +  +   Gl++  il +l+ g+ ++ ++++ + s++   +v++ l+e ++
  CCD23320.1  5 YQIMGRSVPSHYLAMGTIGLVSLCILPSLVGGKKEKVASIN-AISDDEDAFVRKYLQEHKT 64
                79**************************************5.6777778899988877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 485.25
//
Query:       CCD23321.1  [L=292]
Description: hypothetical protein NDAI_0B02860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-40  137.3   0.1      9e-40  136.8   0.1    1.2  1  Brix             Brix domain
  ------ inclusion threshold ------
        0.1   11.1   0.1       0.13   10.8   0.1    1.1  1  Nucleopor_Nup85  Nup85 Nucleoporin


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.1     1e-43     9e-40       1     190 [.      38     223 ..      38     225 .. 0.85

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 1e-43
                 BTT--HHHHHHHHHHHHHCTTSEEEEEE.ECT-TTTHHHHHHH-HHHHHHHHHCTC.SEEEEEE..S.........STTEEEEEEEEECECTGGGSTTT CS
        Brix   1 grktssrlrqllkdlrslmkphtasflk.rnsnklkdlvelagvthlellsekndc.slfvfelskk.........rPngptlefkvenyslmkdlkka 88 
                 +r+++ r+r+l++dl sl+ ph+ +++k   +   kdl +l++      ++e  +c ++++fe++k+          Pngpt++f ++n+++m++l+ +
  CCD23321.1  38 SRGVNFRHRHLIQDLSSLL-PHSRKEPKlDTK---KDLQQLNE------IAELYNCnNILFFEARKHqdlylwlskPPNGPTIKFYIQNLHTMDELNFT 126
                 5788899************.*****9996444...57666666......8887778788888887778888888878********************** PP

                 STS-TT---EEEEES.....HHHHHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTTECEEEEEEEEEEE..STTTTECT..T..EEEEEEE CS
        Brix  89 kktefgsrPllvfng....kenfkllksllqdlFrvpkislkspklsglrrvvlftaaenqetdktisfRhYaiklkksgkklpnlekekkerveLeEi 183
                 +++++gsrP+l+f+     +++++l+k+ll + F vp+ +  ++k+ ++++v++f++ +    d +i+ R+Y+i+  + +k     e+ ++e  +L+Ei
  CCD23321.1 127 GNCLKGSRPILSFDHrfdsSPHYQLIKELLIHNFGVPPTAR-KVKP-FIDHVMSFSIVD----D-KIWARTYEISHTARNKDEY--EEGQEEDLSLVEI 216
                 **************9999999****************9998.6899.*********998....7.8********8433333322..222488******* PP

                 SEEEEEE CS
        Brix 184 GPrfdLk 190
                 GPrf+++
  CCD23321.1 217 GPRFVMT 223
                 *****97 PP

>> Nucleopor_Nup85  Nup85 Nucleoporin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   1.4e-05      0.13      32     109 ..      18      96 ..       1     116 [. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.4e-05
                      GGGGS---------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH........HHHHSSHHHHHHHHHHHHHHHSSSTTHHH CS
  Nucleopor_Nup85  32 qkdressvptsglikksellehsreyrsalralleeleeaieslee...kslkeklekleeleliwnlleilyfdkdsrst 109
                      qk+++    ++ ++k+ +ll  sr ++   r+l+++l + ++  ++    + k++l++l+e+  + n+ +il+f++ + ++
       CCD23321.1  18 QKKQNGG--KNFMNKQRTLLISSRGVNFRHRHLIQDLSSLLPHSRKepkLDTKKDLQQLNEIAELYNCNNILFFEARKHQD 96 
                      3333333..55567899999999*****************999988898889999999****************9875544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2037.27
//
Query:       CCD23322.1  [L=1267]
Description: hypothetical protein NDAI_0B02870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-52  176.7   1.0      3e-25   89.3   0.0    2.7  2  ABC_tran         ABC transporter
    4.4e-41  140.6  24.0    6.3e-26   91.1   9.9    2.6  2  ABC2_membrane    ABC-2 type transporter
      3e-10   40.4  11.3    0.00031   20.6   0.1    4.5  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    5.7e-09   36.1   5.9    0.00016   21.6   0.2    3.1  3  RsgA_GTPase      RsgA GTPase
    1.2e-08   35.5   0.0     0.0035   17.7   0.0    2.4  2  AAA_16           AAA ATPase domain
    3.7e-06   26.5  11.9    3.2e-05   23.5   0.4    3.9  3  SMC_N            RecF/RecN/SMC N terminal domain
    4.4e-06   27.3   0.2       0.18   12.3   0.0    2.9  2  AAA_18           AAA domain
    4.6e-06   26.9   1.3       0.24   11.7   0.0    3.8  3  AAA_22           AAA domain
    6.2e-06   26.2   0.1      0.024   14.6   0.0    2.6  2  NACHT            NACHT domain
    7.8e-06   26.0   0.3      0.063   13.4   0.1    2.8  2  MMR_HSR1         50S ribosome-binding GTPase
    8.1e-06   25.1   0.4      0.066   12.3   0.1    2.4  2  T2SSE            Type II/IV secretion system protein
    9.8e-06   25.2   7.0     0.0086   15.8   0.1    3.1  2  AAA_29           P-loop containing region of AAA domain
    1.2e-05   25.3   0.2      0.016   15.1   0.0    2.5  2  Rad17            Rad17 P-loop domain
    1.3e-05   24.8   0.1      0.021   14.4   0.0    3.2  3  AAA_25           AAA domain
    0.00011   22.6   0.2       0.82   10.1   0.0    2.9  2  RNA_helicase     RNA helicase
    0.00012   22.4   0.1       0.11   12.8   0.0    2.5  2  AAA_28           AAA domain
    0.00028   20.6   0.7       0.66    9.7   0.4    2.3  2  AAA_30           AAA domain
    0.00095   19.2   0.1       0.52   10.3   0.0    2.6  2  AAA_5            AAA domain (dynein-related subfamily)
      0.001   19.6  10.7      0.023   15.2   0.2    3.4  2  AAA_23           AAA domain
     0.0011   18.6   0.5       0.69    9.5   0.1    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0011   19.4   2.5        1.2    9.5   0.1    3.4  3  AAA_17           AAA domain
     0.0018   18.3   1.9       0.32   10.9   0.0    3.0  2  ATPase_2         ATPase domain predominantly from Archaea
     0.0027   17.0   0.1        1.2    8.3   0.0    2.3  2  KAP_NTPase       KAP family P-loop domain
     0.0043   16.5   0.2       0.11   11.9   0.0    2.4  2  Pox_A32          Poxvirus A32 protein
     0.0056   16.4   1.3        2.9    7.5   0.0    2.5  2  AAA_24           AAA domain
      0.007   16.3   2.7        3.5    7.5   0.4    3.1  3  NTPase_1         NTPase
     0.0089   16.2   0.1        5.1    7.2   0.0    2.6  2  AAA_33           AAA domain
     0.0099   16.2   0.4       0.41   11.0   0.1    2.5  2  AAA_19           AAA domain
  ------ inclusion threshold ------
      0.011   15.5   0.5        3.2    7.4   0.0    2.4  2  PRK              Phosphoribulokinase / Uridine kinase family
      0.013   14.8   1.7       0.91    8.8   0.2    2.8  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.014   15.4   0.1          7    6.7   0.0    2.7  2  AAA_14           AAA domain
      0.015   15.7   1.8        9.1    6.7   0.0    3.7  2  AAA              ATPase family associated with various cellul
      0.017   14.3   5.0        1.1    8.3   0.0    2.8  3  NB-ARC           NB-ARC domain
      0.023   14.4   1.9          1    9.0   0.0    3.3  3  Cytidylate_kin   Cytidylate kinase
      0.028   14.7   0.5         22    5.4   0.0    3.5  2  SbcCD_C          Putative exonuclease SbcCD, C subunit
       0.03   14.2   0.2        7.3    6.4   0.0    2.4  2  dNK              Deoxynucleoside kinase
      0.047   12.5   0.1        4.4    6.0   0.0    2.3  2  DUF2791          P-loop Domain of unknown function (DUF2791)
       0.11   11.3   0.8       0.15   10.8   0.0    1.5  2  Adeno_IVa2       Adenovirus IVa2 protein
       0.11   11.8   3.3        1.2    8.4   0.0    3.7  5  ATPase           KaiC
       0.11   11.3   0.8        4.9    5.8   0.3    2.4  2  ABC_ATPase       Predicted ATPase of the ABC class
       0.11   12.2   3.3        8.1    6.1   0.1    2.7  2  ATP_bind_1       Conserved hypothetical ATP binding protein
       0.12   11.6   0.5        7.9    5.7   0.4    2.3  2  Zeta_toxin       Zeta toxin
       0.17   11.1   0.2        1.2    8.3   0.1    2.0  2  DUF2075          Uncharacterized conserved protein (DUF2075)
       0.25   11.2   1.4        3.1    7.7   0.4    2.3  2  MobB             Molybdopterin guanine dinucleotide synthesis
       0.26   11.1   1.0        5.4    6.9   0.2    2.4  2  APS_kinase       Adenylylsulphate kinase
        2.7    7.4   8.2        3.9    6.9   0.1    3.1  3  SRPRB            Signal recognition particle receptor beta su
          4    6.5  31.4       0.41    9.7   5.9    2.7  2  ABC2_membrane_3  ABC-2 family transporter protein
        7.4    5.8   8.0         11    5.2   0.1    3.1  3  Septin           Septin
        9.1    4.8  10.3       0.89    8.1   0.1    3.7  5  AAA_13           AAA domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.2   1.4e-26   5.2e-24       2     136 ..      38     187 ..      37     188 .. 0.91
   2 !   89.3   0.0   8.1e-28     3e-25       1     137 []     684     841 ..     684     841 .. 0.94

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 1.4e-26
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.............HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.............esdee 84 
                 +  sl+l  g+++a++G +G+GK+tLl++la + +    teG+i   +  l+ + +e  + ++++lpq++ l  +lt+re+             e   e
  CCD23322.1  38 DSFSLDLPSGSVMAVMGGSGSGKTTLLNVLASKISGglkTEGTI---NYVLEGEVTENQHVKMAYLPQQDVLSARLTCRETlkyaadlkldkteE---E 130
                 6789*****************************998899*****...44466678889****************************999976431...2 PP

                 ....HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ....xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  85 ....iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                     +++++++lglk+++dt v++s+ + LSgG+++r++    ++++p++++lDEpt
  CCD23322.1 131 kaiiVDQLIRELGLKDCADTEVGDSThKGLSGGEQRRLSAGTQMISNPSIMFLDEPT 187
                 4677******************9999999***************************9 PP

  == domain 2  score: 89.3 bits;  conditional E-value: 8.1e-28
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.......SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH............ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx............ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.......teGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren............ 79 
                 l+ v+  +k+g + ai+G++G+GKStLl+l++g  k+       t+G+i +++ +++e     ++   ++++q+ ++l  +ltvre+            
  CCD23322.1 684 LQSVNAVFKPGMINAIMGPSGSGKSTLLNLISGRIKQsvfskfnTSGKIMFNDVQISE---DMFKGVCSYVSQDdNHLLAKLTVRETfkfaadlrlhhl 779
                 6789999*****************************99*************9999888...9************999********************99 PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                    ++  + +++++ lglk++++++++++  + +SgG+k+rv++   ll++p++lllDEpt+
  CCD23322.1 780 tseQRAIKTDELIRALGLKHCENNIIGNEFiKGISGGEKRRVSMGIQLLNDPPILLLDEPTS 841
                 654444459*****************99999*****************************96 PP

>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   9.9   1.7e-28   6.3e-26       2     208 ..     330     541 ..     329     543 .. 0.92
   2 !   64.9   6.0   1.8e-20   6.5e-18       4     201 ..     994    1190 ..     992    1196 .. 0.95

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 1.7e-28
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedgl.nrpgllffsvlflaf.saltsvapvferergvlerelvsplysls 94 
                    q+++l++r+f++   d +++ ++ + +p ++++++g ++++ + ++ +gl + +g+l+ sv+  ++ ++l+ +  + e++  +++re++ +  ++ 
     CCD23322.1 330 QVRVLTRRNFQLNRSDYVTL-IATFGEPAVMGTLVGWIYYKPDkTTVGGLrTTAGCLYASVVVQCYlYLLFDTYRLCEQDIALYDRERAEGSVTPL 424
                    99********9998888555.*******************8778899999788**********997246677778899999999************ PP

  ABC2_membrane  95 ayvlakvlve.lpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpk 187
                    a+++a+ l+  l   +l++lif++i+yf++gl+ +  +ff+ + +++l+ +++ +l+++  a++++f  as++++l +++l + +Gff++ + mp+
     CCD23322.1 425 AFMTARKLSLfLSDDILMILIFTTITYFMFGLEADgaKFFYQFSITFLSQMCCAGLAMVSVAVSRDFSKASLVGNLTFTVLSMSCGFFVNAKVMPV 520
                    ******999835557888888888************************************************************************ PP

  ABC2_membrane 188 wlqwiaylnPltyavealrsn 208
                    +++w  y+ +  y++ al+s+
     CCD23322.1 521 YVRWTKYIGFTWYGFGALLSS 541
                    ****************99986 PP

  == domain 2  score: 64.9 bits;  conditional E-value: 1.8e-20
  ABC2_membrane    4 kallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsay 96  
                     ++ +kr+ ++  r+  ++ ++r++q+  l+ +f + f  l+ n +++ nr+gl   s+  +++ +l+++ + ++ er  +++e+  ++y   ++
     CCD23322.1  994 LVNVKRQSITTRRNFDSL-MARIAQIPGLGAIFALFFAPLKhNYNSINNRLGLAQESTALYFVGMLANL-ACYPAERDYFYKEHEDNVYGIGPF 1085
                     6889***********999.99*****************99988888889*************7777777.************************ PP

  ABC2_membrane   97 vlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkw 188 
                     +la++++elp+sll+++i+ +++++  gl+++  +ff  ++  ++++ ++ +lg++  ++++    +++ +s++l++ + +sG +     mpk+
     CCD23322.1 1086 FLAYMTLELPLSLLASIIYAIFTVLACGLPRTagNFFANVYCSFIVSGCGEALGIMTNTFFERPGFVVNCISVLLSIGTQMSGLM--SLHMPKV 1177
                     ********************************9999*************************************************..678999* PP

  ABC2_membrane  189 lqwiaylnPltya 201 
                     l+ + ylnP+ y+
     CCD23322.1 1178 LKGFNYLNPVGYT 1190
                     *********9885 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.9      0.11        42       2      20 ..      50      68 ..      49      91 .. 0.78
   2 !    7.6   0.0    0.0083         3     237     299 ..     160     220 ..     149     221 .. 0.85
   3 !   11.9   0.9   0.00041      0.15       1      21 [.     696     716 ..     696     770 .. 0.78
   4 !   20.6   0.1   8.6e-07   0.00031     230     299 ..     806     873 ..     752     874 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.11
      AAA_21  2 nvliGpNgsGKSnLLdald 20
                +++ G  gsGK++LL  l 
  CCD23322.1 50 MAVMGGSGSGKTTLLNVLA 68
                6778999********9994 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0083
      AAA_21 237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSp 299
                 lS G +r l   t +++ +   s+ ++DEp +gL+      +++ lk+l+   g  +i++ H+p
  CCD23322.1 160 LSGGEQRRLSAGTQMISNP---SIMFLDEPTTGLDAYSAYLVVKTLKKLAIeDGRTFIMSIHQP 220
                 6778888888888888888...****************99999999888886788888876665 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00041
      AAA_21   1 lnvliGpNgsGKSnLLdaldl 21 
                 +n++ Gp gsGKS+LL ++++
  CCD23322.1 696 INAIMGPSGSGKSTLLNLISG 716
                 79*****************75 PP

  == domain 4  score: 20.6 bits;  conditional E-value: 8.6e-07
      AAA_21 230 qelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTHSp 299
                 ++  +  +S G kr   +   ll ++   ++ll+DEp +gL+    +++le+lk+l++     vi+t H+p
  CCD23322.1 806 GNEFIKGISGGEKRRVSMGIQLLNDP---PILLLDEPTSGLDSFTSATILEILKKLATeYSKTVIITIHQP 873
                 55555566888888888888888888...************************776662555557776665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   2.4e-05    0.0088      99     131 ..      46      81 ..      20     106 .. 0.71
   2 ?   -1.2   0.1       4.5   1.6e+03      49      78 ..     592     620 ..     589     647 .. 0.71
   3 !   21.6   0.2   4.3e-07   0.00016      86     127 ..     680     722 ..     639     732 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.4e-05
                  T.SEEEEECSTTSSHHHHHHHHCTT-..----S--- CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLinallpel..elktgevs 131
                  + ++++++G SG GK+tL+n+l+++    lkt+ + 
   CCD23322.1  46 SgSVMAVMGGSGSGKTTLLNVLASKIsgGLKTEGTI 81 
                  448999*****************9752245555555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4.5
                  EEEEEE-GGG--HHHHHHHHHHHHHHTTSE CS
  RsgA_GTPase  49 pvivlnKiDlleeeeeleelkeelealgye 78 
                  ++++l K+D++ ++e +++ k++l + + +
   CCD23322.1 592 VILYLHKVDITLQSE-VKSKKKKLDEKENK 620
                  6899******99999.66666665554433 PP

  == domain 3  score: 21.6 bits;  conditional E-value: 4.3e-07
                  THTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT----- CS
  RsgA_GTPase  86 tkegleelkellkd.ktsvlvGqSGvGKStLinallpelelkt 127
                   ke l+++++++k   + +++G+SG GKStL+n + ++ ++++
   CCD23322.1 680 VKEILQSVNAVFKPgMINAIMGPSGSGKSTLLNLISGRIKQSV 722
                  456677888888877899*******************988876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.7e-05     0.021      23      84 ..      46     118 ..      37     186 .. 0.63
   2 !   17.7   0.0   9.6e-06    0.0035       7      63 ..     678     729 ..     677     868 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.7e-05
      AAA_16  23 rpelvllsGesGvGKsslvrellralekd.....g.giflrgkcdql.esaipy....salaqalareellrq 84 
                 +++++ + G sG+GK++l++ l+  +++         ++l+g+ +++ + +++y    ++l   l+ +e l+ 
  CCD23322.1  46 SGSVMAVMGGSGSGKTTLLNVLASKISGGlktegTiNYVLEGEVTENqHVKMAYlpqqDVLSARLTCRETLKY 118
                 447899******************9999888886346779999999943335554443222222222222222 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 9.6e-06
      AAA_16   7 eeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 ee++++l+ +++v +++  +  + G+sG+GKs+l++ +  +++++    +  k+  +
  CCD23322.1 678 EEVKEILQSVNAVFKPG-MINAIMGPSGSGKSTLLNLISGRIKQS----VFSKFNTS 729
                 57778888888888887.67889*********************9....66666665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.3    0.0036       1.3      25     198 ..      48     218 ..      39     226 .. 0.62
   2 ?   -2.0   1.0       5.5     2e+03      90     133 ..     615     661 ..     595     663 .. 0.58
   3 !   23.5   0.4   8.8e-08   3.2e-05      10     206 ..     680     879 ..     674     890 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0036
                 SEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE.....SSSSSSCEEEEEEEETTSEEEEEETTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk.....lkiekeevsisrrvkrkgeseykingkev 118
                 s+ a++G  GSGK+ ll+ +      + +  l+ e + + + +   ++ +++ +v++ +  +++      +  e+ ++    ++ +++e +  i ++ +
  CCD23322.1  48 SVMAVMGGSGSGKTTLLNVL----ASKISGGLKTEGTINYVLE---GEVTENQHVKMAYLPQQDVlsarlTCRETLKYAADLKLDKTEEEKAIIVDQLI 139
                 57789999999999988765....5444456666655444444...45555555666553333331111133333344445555555555555555555 PP

                 -HHHHHHHHHCTT-STT...........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC.TTSEEEEE-SS CS
                 xxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
       SMC_N 119 tkkevsellesagiske...........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeks.knaQfivislr 198
                 ++  +++                      LSgGe+      L   +q+++  ++++lDe    LD+     v++ lk+   ++   +++s++
  CCD23322.1 140 RELGLKD---------CadtevgdsthkGLSGGEQR----RLSAGTQMISNPSIMFLDEPTTGLDAYSAYLVVKTLKKLAiEDGRTFIMSIH 218
                 5544444.........2455555555559****987....44457999999*************************9865244666666665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.5
                 SSSSSSCEEEE..EEEETTSE.EEEEETTEEE-HHHHHHHHHCTT-S CS
                 xxxxxxxxxxx..xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  90 lkiekeevsis..rrvkrkge.seykingkevtkkevsellesagis 133
                  + e++e+ i    +++++++  e+ i+ ++ +++e++  l++ +++
  CCD23322.1 615 DEKENKEIMIDpfASISKENSeKEIDIESRSTSNSEITITLQDIDLQ 661
                 33355556664113333333337888889999999999999888765 PP

  == domain 3  score: 23.5 bits;  conditional E-value: 8.8e-08
                 ETTEECEEEEEETTSS.EEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTS CS
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  10 Fksyagktvilpfsks.ftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkg 107
                 +k +  ++v   f+++ ++ai+Gp GSGKs ll+ i+  + ++     + ++  +++++  + ++ ++  v  +++++d++      +++++ + k   
  CCD23322.1 680 VKEIL-QSVNAVFKPGmINAIMGPSGSGKSTLLNLISGRIKQSVF--SKFNTSGKIMFNDVQISEDMFKGVCSYVSQDDNH---LLAKLTVRETFKFAA 772
                 56665.6666777776269*****************655553333..3455667788886666667777777777777776...233444444444444 PP

                 E..EEEEE.TTEEE-HHHHHHHHHCTT-STT........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT.SEEEE CS
                 x..xxxxx.xxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
       SMC_N 108 e..seyki.ngkevtkkevsellesagiske........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn.aQfiv 194
                 +   ++   +++ ++  e+ + l  ++ + +         +SgGek  v++     iq  +  p+ llDe  + LD    + + e+lk+  ++ +  ++
  CCD23322.1 773 DlrLHHLTsEQRAIKTDELIRALGLKHCENNiignefikGISGGEKRRVSM----GIQLLNDPPILLLDEPTSGLDSFTSATILEILKKLATEySKTVI 867
                 32123333133334445566665555555557777777789*****98876....57899****************************98877699999 PP

                 E-SSHHHCCC-S CS
                 xxxxxxxxxxxx RF
       SMC_N 195 islreemlekad 206
                 i++++   e  +
  CCD23322.1 868 ITIHQPRSELFK 879
                 999887766555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   0.00071      0.26       3      87 ..      52     143 ..      50     151 .. 0.53
   2 !   12.3   0.0    0.0005      0.18       3      46 ..     699     764 ..     698     806 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00071
      AAA_18   3 ltGtpGvGKttlakeLskrlgf..........gvnlrdvakenglllevdpealdeskrldedkldklldaleenss...........aleegknlvid 80 
                 ++G +G+GKttl + L+++  +                       l+++  e  +  k +  +++d+l+  l  +++           + ee+k +++d
  CCD23322.1  52 VMGGSGSGKTTLLNVLASKI-SgglktegtinY-----------VLEGEVTE-NQHVKMAYLPQQDVLSARL-TCREtlkyaadlkldKTEEEKAIIVD 136
                 8899************9996.122343333331...........22222222.1222222222222222222.22222334555666677888889999 PP

      AAA_18  81 ghlaele 87 
                 +++ el 
  CCD23322.1 137 QLIRELG 143
                 8887765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.0005
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf...............gvnlrdvakenglllevdpe......al 46 
                 ++G++G+GK+tl + +s r  ++               ++++ d++k   ++ ++d++       +
  CCD23322.1 699 IMGPSGSGKSTLLNLISGRIkQSvfskfntsgkimfndVQISEDMFKGVCSYVSQDDNhllaklTV 764
                 89**************98864447777788888888988888888888888888888866665544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00066      0.24       5      70 ..      47     126 ..      45     151 .. 0.68
   2 !   10.1   0.1     0.002      0.72       8      28 ..     697     717 ..     692     878 .. 0.84
   3 ?    0.8   0.0       1.5   5.5e+02      40      88 ..     906     953 ..     874     960 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00066
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee...........erpevvfvtlpsst..sskdl.lrellralglelka 70 
                  ++++v+G sG+GKTtll+ l+++     k e            e+ +v   +lp++   s +   ++ l  a +l+l++
  CCD23322.1  47 GSVMAVMGGSGSGKTTLLNVLASKISGGLKTEGtinyvlegevtENQHVKMAYLPQQDvlSARLTcRETLKYAADLKLDK 126
                 57899****************99987666666677788777777666666666666666644444245555555555555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.002
      AAA_22   8 lvvtGesGtGKTtllrrlleq 28 
                  +++G+sG+GK+tll+ +  +
  CCD23322.1 697 NAIMGPSGSGKSTLLNLISGR 717
                 589***********9987655 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 1.5
      AAA_22  40 pevvfvtlpsstsskdllrellralglelkaerlsseellealeqalra 88 
                  + + +++p+ t+ +d++ +l ++ +++  + + +s++  e++   +++
  CCD23322.1 906 FSSLGYDCPEFTNVADFFLDLISINTQNEQN-EYTSKARAEHILTSWKQ 953
                 556789***********87777765554444.35555555555555554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.5e-05     0.024       2      38 ..      49      85 ..      48     113 .. 0.80
   2 !    8.9   0.0    0.0036       1.3       4      31 ..     698     725 ..     696     765 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.5e-05
                CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEE CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegklpqgafklvF 38
                ++++ G +GsGKTtLl  la+++  g   +g+  +v+
  CCD23322.1 49 VMAVMGGSGSGKTTLLNVLASKISGGLKTEGTINYVL 85
                799*******************999877777777766 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0036
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 ++ G++GsGK+tLl  +   ++++   +
  CCD23322.1 698 AIMGPSGSGKSTLLNLISGRIKQSVFSK 725
                 589************9999999887655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0026      0.93       2      42 ..      50      90 ..      49     133 .. 0.85
   2 !   13.4   0.1   0.00017     0.063       3      32 ..     698     728 ..     697     754 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0026
                EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk 42
                +a++G + +GK+tL+n l  + +   ++ gt   + eg+v+
  CCD23322.1 50 MAVMGGSGSGKTTLLNVLASKISGGLKTEGTINYVLEGEVT 90
                689***************99988777777777777777776 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00017
                 EEEESTTSSHHHHHHHHHTS.TEEESSSTTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.kaivsdkpgt 32 
                 ai+G + +GKStL+n ++g+ k  v +k  t
  CCD23322.1 698 AIMGPSGSGKSTLLNLISGRiKQSVFSKFNT 728
                 79*****************955555444344 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   0.00018     0.066     131     167 ..      49      81 ..      20     119 .. 0.72
   2 !   10.5   0.0    0.0006      0.22     116     156 ..     678     721 ..     608     726 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00018
       T2SSE 131 lilvsGgTgsGKttllyallkeinksderivtvEDpv 167
                 ++ v Gg gsGKttll++l ++i       +  E ++
  CCD23322.1  49 VMAVMGGSGSGKTTLLNVLASKISGG----LKTEGTI 81 
                 67799**************9999876....3334444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0006
       T2SSE 116 ekiaevlrk..avrergli.lvsGgTgsGKttllyallkeinks 156
                 e+++e+l++  av + g+i  + G+ gsGK+tll+ +   i++s
  CCD23322.1 678 EEVKEILQSvnAVFKPGMInAIMGPSGSGKSTLLNLISGRIKQS 721
                 66666666322566666664699**************9999875 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.3   0.00032      0.12      19      39 ..      44      64 ..      33      71 .. 0.81
   2 !   15.8   0.1   2.4e-05    0.0086      22      39 ..     694     711 ..     684     729 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00032
      AAA_29 19 idlkg.atlltGpsGsGKSTll 39
                +  +g ++ ++G sGsGK+Tll
  CCD23322.1 44 LP-SGsVMAVMGGSGSGKTTLL 64
                44.55699*************9 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.4e-05
      AAA_29  22 kgatlltGpsGsGKSTll 39 
                   +  ++GpsGsGKSTll
  CCD23322.1 694 GMINAIMGPSGSGKSTLL 711
                 34789************9 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0      0.01       3.7      44     123 ..      46     125 ..      17     142 .. 0.62
   2 !   15.1   0.0   4.4e-05     0.016      30     101 ..     679     753 ..     675     792 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.01
       Rad17  44 kkriLLisGPsGCgkstvvkvLs.kel.giklrewlnpvslkepdnqksdfkgltekesrflsqiesfkeleLkdakylklq 123
                    ++ + G sG gk+t ++vL+ k+  g k +  +n v+  e   +++ +k     ++  ls   + +e  Lk a  lkl+
  CCD23322.1  46 SGSVMAVMGGSGSGKTTLLNVLAsKISgGLKTEGTINYVLEGE-VTENQHVKMAYLPQQDVLSARLTCRET-LKYAADLKLD 125
                 44588999**************625543567777888877322.222333333333333355555566665.5555555555 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 4.4e-05
       Rad17  30 evkewlkadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrewln...pvslkepdnqksdfkgltekesr 101
                 evke l++     ++  i  i GPsG gkst ++ +s     ++    n    + +++ +  ++ fkg++   s+
  CCD23322.1 679 EVKEILQSVNAVFKPGMINAIMGPSGSGKSTLLNLISGRIKQSVFSKFNtsgKIMFNDVQISEDMFKGVCSYVSQ 753
                 56666666666666667999****************97766666665551115788999999999**99987763 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.7e-05     0.021      30      66 ..      44      82 ..      35     137 .. 0.86
   2 ?   -1.6   0.0       4.6   1.7e+03     125     162 ..     602     638 ..     592     645 .. 0.75
   3 ?    6.3   0.0     0.018       6.5      30      54 ..     691     715 ..     676     795 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.7e-05
      AAA_25 30 lpagelallaGapgtGKttlaldlalavatGkpwlg..p 66
                lp g++ +++G +g+GKttl+  la +++ G +  g  +
  CCD23322.1 44 LPSGSVMAVMGGSGSGKTTLLNVLASKISGGLKTEGtiN 82
                799**************************9998777541 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.6
      AAA_25 125 lltadvdaleaaieevegvrlvviDplsralggdensn 162
                 +l+++v+   ++++e ++ + + iDp++++   +++++
  CCD23322.1 602 TLQSEVKSKKKKLDE-KENKEIMIDPFASISKENSEKE 638
                 467777778888888.778999*******998876665 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.018
      AAA_25  30 lpagelallaGapgtGKttlaldla 54 
                    g +++++G++g+GK+tl+  ++
  CCD23322.1 691 FKPGMINAIMGPSGSGKSTLLNLIS 715
                 55678899***********986555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0022      0.82       3      33 ..      52      82 ..      50     134 .. 0.83
   2 !    9.3   0.0    0.0041       1.5       3      33 ..     699     731 ..     698     751 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0022
  RNA_helicase  3 lyGpsgeGKStlakeLakallkklklkkkds 33
                  + G sg GK+tl + La+++++ lk++ + +
    CCD23322.1 52 VMGGSGSGKTTLLNVLASKISGGLKTEGTIN 82
                  78*******************9886655444 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0041
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl..klkkkds 33 
                   + Gpsg GKStl + ++ ++ +++  k++++++
    CCD23322.1 699 IMGPSGSGKSTLLNLISGRIKQSVfsKFNTSGK 731
                   78*************998888776554444444 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00029      0.11       3      23 ..      51      74 ..      49     136 .. 0.75
   2 ?    7.0   0.0     0.017       6.2       3      22 ..     698     717 ..     697     738 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00029
      AAA_28  3 vitGgestGKTtlleaLaar...g 23
                +++Gg+++GKTtll+ La++   g
  CCD23322.1 51 AVMGGSGSGKTTLLNVLASKisgG 74
                799***************875542 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.017
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                 +i+G++++GK+tll+ ++ r
  CCD23322.1 698 AIMGPSGSGKSTLLNLISGR 717
                 699***********998865 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.4    0.0018      0.66      17      41 ..      47      70 ..      43      82 .. 0.86
   2 !    8.6   0.0    0.0037       1.4      15      42 ..     692     718 ..     684     726 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0018
      AAA_30 17 gdrvavltGpAGtGKttalkalrea 41
                g  v+++ G+ G+GKtt+l++l+  
  CCD23322.1 47 G-SVMAVMGGSGSGKTTLLNVLASK 70
                4.4999**************99765 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0037
      AAA_30  15 tsgdrvavltGpAGtGKttalkalreaw 42 
                 + + ++ ++ Gp G+GK+t+l+ +   +
  CCD23322.1 692 K-PGMINAIMGPSGSGKSTLLNLISGRI 718
                 3.446999*************9986555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.031        11       5      50 ..      53     104 ..      50     137 .. 0.84
   2 !   10.3   0.0    0.0014      0.52       4      33 ..     699     728 ..     698     742 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.031
                 E--SSSSHHHHHHHGGGGB......S--EEEEE--TT--HHHHH--B--... CS
       AAA_5   5 vGppGtgKselaerlaaal......nreveyvqltrdtteedlkgrreikng 50 
                  G +G+gK++l   la+ +      + +++yv+  + t+ +++k+ + ++++
  CCD23322.1  53 MGGSGSGKTTLLNVLASKIsgglktEGTINYVLEGEVTENQHVKMAYLPQQD 104
                 799****************999988888899999999999999988887654 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0014
                 EE--SSSSHHHHHHHGGGGBS--EEEEE-- CS
       AAA_5   4 LvGppGtgKselaerlaaalnreveyvqlt 33 
                 + Gp+G+gKs+l   ++ +++++v+ + +t
  CCD23322.1 699 IMGPSGSGKSTLLNLISGRIKQSVFSKFNT 728
                 57********************99977665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0042       1.5      13      45 ..      40      73 ..      27     154 .. 0.76
   2 !   15.2   0.2   6.2e-05     0.023      18      39 ..     692     714 ..     683     741 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0042
      AAA_23 13 qeidF.skgltlItGpNGaGKTTildAiklaLyg 45
                +++d+ s  + ++ G  G+GKTT+l+ +     g
  CCD23322.1 40 FSLDLpSGSVMAVMGGSGSGKTTLLNVLASKISG 73
                55666666788899***********988766655 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 6.2e-05
      AAA_23  18 skg.ltlItGpNGaGKTTildAi 39 
                 ++g +++I Gp G+GK+T+l+ i
  CCD23322.1 692 KPGmINAIMGPSGSGKSTLLNLI 714
                 554389**************988 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1    0.0019      0.69       2      35 ..      49      88 ..      48     111 .. 0.72
   2 !    7.2   0.0    0.0096       3.5       4      21 ..     698     715 ..     695     744 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0019
                EEEEEESTTCCHHHHHHHHH......CT--SS-EEEEESS CS
        cobW  2 vtvltGflGsGKTtLlnhll......enraglklavivNe 35
                v+ + G  GsGKTtLln l        +++g    v+++e
  CCD23322.1 49 VMAVMGGSGSGKTTLLNVLAskisggLKTEGTINYVLEGE 88
                66788999*********99864444444444444555555 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0096
                 EEEESTTCCHHHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnhll 21 
                  + G+ GsGK+tLln + 
  CCD23322.1 698 AIMGPSGSGKSTLLNLIS 715
                 689***********9776 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1    0.0034       1.2       1      79 [.      53     138 ..      53     151 .. 0.65
   2 ?    0.6   0.2       1.9   6.8e+02      63      92 ..     611     639 ..     595     680 .. 0.54
   3 ?    6.8   0.0     0.023       8.3       1      32 [.     700     735 ..     700     768 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0034
                 EE-TTSSHHHHHHHHHHHH........TEEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE- CS
      AAA_17   1 lGgPGsGKgtqceklveky........gfthlsaGdllreeakrgglakardemrklpleekkelqkeaaekiaeeakkkgvlvdgh 79 
                 +Gg GsGK+t+++ l+ k+         + ++  G++  +   +    +++d +  + l  ++ l   a  k+ +++++k ++vd  
  CCD23322.1  53 MGGSGSGKTTLLNVLASKIsgglktegTINYVLEGEVTENQHVKMAYLPQQD-VLSARLTCRETLKYAADLKLDKTEEEKAIIVDQL 138
                 59**************998665555555666666777764444444334444.3345555555555555556666666677777765 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.9
                 HHHHHHHHSSEEEEEE-SEEEETTEEEESS CS
      AAA_17  63 ekiaeeakkkgvlvdghprikeqagfldgl 92 
                 +k  +e+++k++++d +++i +++ +  ++
  CCD23322.1 611 KKKLDEKENKEIMIDPFASISKENSEK-EI 639
                 222334477889999999986655442.22 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.023
                 EE-TTSSHHHHHHHHHHHHTEEEE...EH.HHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthl...sa.Gdllre 32 
                 +G+ GsGK+t+++ +  +++ +++   ++ G ++++
  CCD23322.1 700 MGPSGSGKSTLLNLISGRIKQSVFskfNTsGKIMFN 735
                 59**********999866654443000334666665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.034        12      21      45 ..      48      72 ..      42     144 .. 0.75
   2 !   10.9   0.0   0.00089      0.32       6      43 ..     678     717 ..     677     789 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.034
    ATPase_2 21 eiyfiYGpegsGKtaLlkeiienle 45
                +++ + G  gsGKt+Ll+ ++++ +
  CCD23322.1 48 SVMAVMGGSGSGKTTLLNVLASKIS 72
                678899************9998873 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00089
    ATPase_2   6 kelkeleeiler..epneiyfiYGpegsGKtaLlkeiien 43 
                 +e+ke+++ ++   +p +i  i Gp gsGK++Ll+ i  +
  CCD23322.1 678 EEVKEILQSVNAvfKPGMINAIMGPSGSGKSTLLNLISGR 717
                 577777777664337999****************977555 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.012       4.4       5      45 ..      29      72 ..      26     135 .. 0.88
   2 !    8.3   0.0    0.0033       1.2      12      58 ..     684     726 ..     675     909 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
  KAP_NTPase  5 asaladilseptl...atpivvgLygkWGsGKssllnkledelk 45
                as+ +++l+++ +     ++v ++ g  GsGK++lln l ++++
  CCD23322.1 29 ASNTNTVLVDSFSldlPSGSVMAVMGGSGSGKTTLLNVLASKIS 72
                66667777766445558899999***************999875 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0033
  KAP_NTPase  12 lseptl..atpivvgLygkWGsGKssllnkledelkefakpvrflfaef 58 
                 l++ ++  +++++ ++ g+ GsGKs+lln++   +k+       +f +f
  CCD23322.1 684 LQSVNAvfKPGMINAIMGPSGSGKSTLLNLISGRIKQS------VFSKF 726
                 55555455777777888888****************99......33333 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00031      0.11      16      40 ..      50      74 ..      44     133 .. 0.88
   2 ?    1.8   0.1      0.37   1.3e+02      17      36 ..     698     716 ..     688     727 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00031
     Pox_A32 16 lalvGgsGsGktvyLlsLlrtlvkk 40
                +a++GgsGsGkt+ L  L +++  +
  CCD23322.1 50 MAVMGGSGSGKTTLLNVLASKISGG 74
                9**************9999988765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.37
     Pox_A32  17 alvGgsGsGktvyLlsLlrt 36 
                 a++G sGsGk + Ll+L++ 
  CCD23322.1 698 AIMGPSGSGKST-LLNLISG 716
                 89********98.5677665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.6     0.012       4.5       4      22 ..      49      67 ..      46      82 .. 0.87
   2 !    7.5   0.0    0.0081       2.9       6      23 ..     698     717 ..     694     765 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.012
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                 ++++G sg+GKTtl++ l
  CCD23322.1 49 VMAVMGGSGSGKTTLLNVL 67
                689***********99765 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0081
      AAA_24   6 liyGpsgiGKTtlakel..g 23 
                 +i+Gpsg+GK+tl++ +   
  CCD23322.1 698 AIMGPSGSGKSTLLNLIsgR 717
                 79***********9987542 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.4    0.0095       3.5       3      34 ..      51      81 ..      49      94 .. 0.87
   2 ?    6.6   0.0     0.018       6.6       4      26 ..     699     721 ..     697     730 .. 0.89
   3 ?   -0.5   0.0       2.7   9.9e+02     112     144 ..     849     881 ..     835     886 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0095
                EEE--TTSSHHHHHHHHHHHH...GGGEEEEE CS
    NTPase_1  3 fiTGppGvGKtTlvkkvlellkssgvkvgGfy 34
                ++ G +G+GKtTl++ +++++ s g+k +G +
  CCD23322.1 51 AVMGGSGSGKTTLLNVLASKI-SGGLKTEGTI 81
                67899****************.7899999976 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.018
                 EE--TTSSHHHHHHHHHHHH... CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkss 26 
                 i Gp+G+GK+Tl++ ++  +k+s
  CCD23322.1 699 IMGPSGSGKSTLLNLISGRIKQS 721
                 78**************9999876 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.7
                 HHHHHHHHHHHT.TTSEEEEE--SS--SHHHHHH CS
    NTPase_1 112 kkfkeaveevLk.sekpvlavihrrkdlalveei 144
                 +++ e ++++ +  +k v+++ih++ +++l +e+
  CCD23322.1 849 ATILEILKKLATeYSKTVIITIHQP-RSELFKEF 881
                 55556666666667899********.78888876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.014       5.1       2      23 ..      50      71 ..      49     177 .. 0.70
   2 ?    6.3   0.0     0.027        10       5      16 ..     700     711 ..     697     742 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.014
      AAA_33  2 vllvGlpGsGKstlaerllkkl 23
                + + G +GsGK+tl+  l+ k 
  CCD23322.1 50 MAVMGGSGSGKTTLLNVLASKI 71
                668899*********9997664 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.027
      AAA_33   5 vGlpGsGKstla 16 
                  G++GsGKstl+
  CCD23322.1 700 MGPSGSGKSTLL 711
                 7*********97 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1    0.0011      0.41      10      32 ..      47      69 ..      43      99 .. 0.88
   2 ?    2.5   0.0      0.47   1.7e+02      12      36 ..     696     720 ..     686     734 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0011
      AAA_19 10 ekvllvtaGpGtGKTrvlkhiva 32
                 +v++v++G G+GKT++l+   +
  CCD23322.1 47 GSVMAVMGGSGSGKTTLLNVLAS 69
                5799************9987655 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.47
      AAA_19  12 vllvtaGpGtGKTrvlkhivallve 36 
                 + +++++ G+GK+++l+ i   +++
  CCD23322.1 696 INAIMGPSGSGKSTLLNLISGRIKQ 720
                 457999********99987666555 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0088       3.2       1      29 [.      49      77 ..      49     104 .. 0.78
   2 ?    6.0   0.1     0.025       9.1       3      28 ..     698     723 ..     696     749 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0088
         PRK  1 vIgvagsSGaGkttvarklekifgrekvk 29
                v++v g SG+Gktt+ + l + + +  ++
  CCD23322.1 49 VMAVMGGSGSGKTTLLNVLASKISGGLKT 77
                679*************9999988754444 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.025
         PRK   3 gvagsSGaGkttvarklekifgrekv 28 
                 ++ g+SG+Gk+t+ + +  ++++   
  CCD23322.1 698 AIMGPSGSGKSTLLNLISGRIKQSVF 723
                 799************99998885544 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2    0.0025      0.91      34      59 ..      43      67 ..      29      70 .. 0.83
   2 ?    4.0   0.0     0.075        27      43      57 ..     698     712 ..     675     715 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0025
                  EGGGS-.SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 34 dlkkmashllvaGatgsGKStalntL 59
                  dl++    + v+G++gsGK+t ln+L
    CCD23322.1 43 DLPSGS-VMAVMGGSGSGKTTLLNVL 67
                  555555.789**************98 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.075
                   EEE--TTSSHHHHHH CS
  FtsK_SpoIIIE  43 lvaGatgsGKStaln 57 
                    ++G +gsGKSt ln
    CCD23322.1 698 AIMGPSGSGKSTLLN 712
                   599*********998 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.038        14       3      36 ..      48      83 ..      46     140 .. 0.71
   2 ?    6.7   0.0     0.019         7       4      40 ..     696     728 ..     694     759 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.038
      AAA_14  3 kilvitGaRrvGKTtllkqlikell..vkkesilyi 36
                 +++++G   +GKTtll+ l+++     k e ++ +
  CCD23322.1 48 SVMAVMGGSGSGKTTLLNVLASKISggLKTEGTINY 83
                57899999*********9999877677444444433 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.019
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldd 40 
                 i +i+G+  +GK+tll +li+ ++   ++ ++ ++++
  CCD23322.1 696 INAIMGPSGSGKSTLL-NLISGRI---KQSVFSKFNT 728
                 789************8.5556666...4555555444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.6     0.065        24       2      23 ..      51      72 ..      50     187 .. 0.77
   2 ?    6.7   0.0     0.025       9.1       3      35 ..     699     734 ..     698     769 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.065
                EEESSTTSSHHHHHHHHHHHHT CS
         AAA  2 llyGppGtGKTllakavakelg 23
                 ++G  G GKT+l + +a++++
  CCD23322.1 51 AVMGGSGSGKTTLLNVLASKIS 72
                67899*************9974 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.025
                 EESSTTSSHHHHHHHHHHHHTHEE...EEEETTTCS CS
         AAA   3 lyGppGtGKTllakavakelgvef...leisgsell 35 
                 ++Gp G GK++l + +   +++++   +++sg+ ++
  CCD23322.1 699 IMGPSGSGKSTLLNLISGRIKQSVfskFNTSGKIMF 734
                 58*****************98554111455555544 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1    0.0058       2.1      21      43 ..      48      70 ..      37      93 .. 0.87
   2 ?    8.3   0.0    0.0031       1.1      17      80 ..     692     755 ..     676     795 .. 0.70
   3 ?   -2.4   0.2       5.9   2.1e+03     210     241 ..     944     975 ..     940     979 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0058
                EEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC 21 lvvalvGmgGvGKttlakqilnk 43
                 v+a++G  G+GKttl++   +k
  CCD23322.1 48 SVMAVMGGSGSGKTTLLNVLASK 70
                59**************9876665 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0031
                 TSCSEEEEEEESTTSSHHHHHHHHCCSH.CCCCCCBTEEEEEEEESXXHHHHHHHXXHHHHHCCC CS
      NB-ARC  17 elqslvvalvGmgGvGKttlakqilnks.devegrFdsvawvvvsktdkseeiletilkeLslse 80 
                 +++ ++ a++G  G+GK+tl++ i     ++v ++F+    ++  +   se++++ +   +s+ +
  CCD23322.1 692 KPG-MINAIMGPSGSGKSTLLNLISGRIkQSVFSKFNTSGKIMFNDVQISEDMFKGVCSYVSQDD 755
                 455.6779*************99987651456668888777766666666666666666555544 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 5.9
                 -TCSCCHHHHHHHHHHCTGCCTS--SSSSSSS CS
      NB-ARC 210 tkktveewkkvlekleskllevekstsksles 241
                  ++++ +wk+ +++l+ k  + ek+++++ + 
  CCD23322.1 944 AEHILTSWKQRNNTLSVKSPVSEKNEMSEENF 975
                 569999**********9888878887777665 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.23        84       2      23 ..      51      72 ..      50      99 .. 0.88
   2 ?    9.0   0.0    0.0029         1       2      28 ..     698     724 ..     697     795 .. 0.74
   3 ?   -1.7   0.0       5.5     2e+03      30      45 ..    1247    1262 ..    1240    1265 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.23
                    EEE-STTSSHHHHHHHHHHHHT CS
  Cytidylate_kin  2 aiDGPagsGKssvaralaeklg 23
                    a+ G +gsGK ++   la+k++
      CCD23322.1 51 AVMGGSGSGKTTLLNVLASKIS 72
                    78899**************986 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0029
                     EEE-STTSSHHHHHHHHHHHHT-EEEE CS
  Cytidylate_kin   2 aiDGPagsGKssvaralaeklglkyld 28 
                     ai GP+gsGKs++  +++ +++ ++++
      CCD23322.1 698 AIMGPSGSGKSTLLNLISGRIKQSVFS 724
                     789************999998876665 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 5.5
                      HHHHHHHHHHHHHTT- CS
  Cytidylate_kin   30 galYRalalaalrrkv 45  
                      + +YR +a+ +l++k 
      CCD23322.1 1247 AIIYRLIAYCILKAKL 1262
                      579*********9886 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1      0.08        29      30      89 ..     157     203 ..     140     204 .. 0.66
   2 ?    5.4   0.0      0.06        22      64      89 ..     831     856 ..     810     857 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.08
     SbcCD_C  30 sgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 +++lSGGe++ l       a  +++       ++++++fLDE   +lD+ s+  ++++l+
  CCD23322.1 157 HKGLSGGEQRRL------SAGTQMI-------SNPSIMFLDEPTTGLDAYSAYLVVKTLK 203
                 556666666222......1222222.......3478999999999999988877777665 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.06
     SbcCD_C  64 lrlvfLDEAFsklDeesiatllelle 89 
                 + +++LDE  s+lD+ ++at+le+l+
  CCD23322.1 831 PPILLLDEPTSGLDSFTSATILEILK 856
                 6689*******************997 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0      0.02       7.3       2      34 ..      51      83 ..      50     136 .. 0.76
   2 ?    5.3   0.0     0.043        16       3      28 ..     699     724 ..     698     744 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.02
                EEEESTTSSHHHHHHHHHCCSTCEEEE-HHHHC CS
         dNK  2 vveGnIgaGKstlvklLskklgvkvfeEpvdkw 34
                +v G  g+GK+tl+++L+ k+     +E   ++
  CCD23322.1 51 AVMGGSGSGKTTLLNVLASKISGGLKTEGTINY 83
                577888************998766666644444 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.043
                 EEESTTSSHHHHHHHHHCCSTCEEEE CS
         dNK   3 veGnIgaGKstlvklLskklgvkvfe 28 
                 + G+ g+GKstl++l+s +++  vf+
  CCD23322.1 699 IMGPSGSGKSTLLNLISGRIKQSVFS 724
                 78999***********9988777665 PP

>> DUF2791  P-loop Domain of unknown function (DUF2791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.051        19      13      71 ..      10      69 ..       2      73 .. 0.72
   2 ?    6.0   0.0     0.012       4.4      32      78 ..     678     723 ..     669     741 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.051
     DUF2791 13 LraGvVPriGleliaVGr.ereiealledlervaeggaafrfirGeYGsGKtFllqllre 71
                L+  +VPr+Gl+     + +++++++l d  +    ++++ +++G  GsGKt ll++l++
  CCD23322.1 10 LSLSMVPRVGLHVRDLSIiASNTNTVLVDSFSLDLPSGSVMAVMGGSGSGKTTLLNVLAS 69
                666689999998755543134455555555667777888999*************99876 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.012
     DUF2791  32 reiealledlervaeggaafrfirGeYGsGKtFllqllreralergf 78 
                 +e++++l+ +++v +  +++ +i+G  GsGK+ ll+l+  r ++  f
  CCD23322.1 678 EEVKEILQSVNAVFKP-GMINAIMGPSGSGKSTLLNLISGRIKQSVF 723
                 6788999999999875.689******************998877655 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       9.3   3.4e+03      92     109 ..      52      69 ..      41      71 .. 0.79
   2 ?   10.8   0.0   0.00042      0.15      78     112 ..     684     718 ..     655     724 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 9.3
  Adeno_IVa2  92 iyGPtGsGksqllrnlis 109
                 + G  GsGk+ ll  l s
  CCD23322.1  52 VMGGSGSGKTTLLNVLAS 69 
                 57889*******988766 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00042
  Adeno_IVa2  78 lsslnyglqP.viGviyGPtGsGksqllrnlisskl 112
                 l s+n   +P +i  i GP GsGks ll nlis ++
  CCD23322.1 684 LQSVNAVFKPgMINAIMGPSGSGKSTLL-NLISGRI 718
                 789999888879**************98.8999765 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0033       1.2      16      35 ..      44      63 ..      35      70 .. 0.90
   2 ?   -2.4   0.0       6.6   2.4e+03     126     159 ..     273     305 ..     247     324 .. 0.64
   3 ?   -2.7   0.3       8.3     3e+03     113     138 ..     612     637 ..     600     656 .. 0.72
   4 ?   -0.8   0.0       2.1   7.7e+02      19      35 ..     694     710 ..     683     712 .. 0.84
   5 ?    0.3   0.0      0.99   3.6e+02      56     105 ..     895     945 ..     893     963 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0033
      ATPase 16 ipegrvvlitGepGtGKtif 35
                +p+g+v+ ++G++G+GKt++
  CCD23322.1 44 LPSGSVMAVMGGSGSGKTTL 63
                89****************97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.6
      ATPase 126 DsitglayeekeavaReilrqlvrvlkklgvTai 159
                  s++g   +e e+++R  l qlv+  k+++  ++
  CCD23322.1 273 SSVDGR-SDEAEEETRIRLNQLVESWKQYEANTL 305
                 344444.556666666666666666666665554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 8.3
      ATPase 113 eaikeikakrvviDsitglayeekea 138
                 + ++e++ k ++iD+ +++++e++e+
  CCD23322.1 612 KKLDEKENKEIMIDPFASISKENSEK 637
                 45566777888888888885555544 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 2.1
      ATPase  19 grvvlitGepGtGKtif 35 
                 g +  i+G +G+GK+++
  CCD23322.1 694 GMINAIMGPSGSGKSTL 710
                 56778*********987 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.99
      ATPase  56 veepaedlrenakslGwdlekleeegklaiidasesaeesaee..kdkedle 105
                 ++ ++ +++e ++slG d  ++ +   +++ d+ + +++++++  ++k+ +e
  CCD23322.1 895 FNGSPDKMIEYFSSLGYDCPEFTNVADFFL-DLISINTQNEQNeyTSKARAE 945
                 6667899****************9977665.555444443333244444444 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3     0.013       4.9     242     266 ..      44      69 ..      40      79 .. 0.89
   2 ?    3.1   0.0     0.094        34     244     265 ..     693     715 ..     688     727 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.013
                 E-SS.EEEEEE-TTSSHHHHHHHHHH CS
  ABC_ATPase 242 ipkG.vtlIvGggfhGKsTLLeAlek 266
                 +p G v++++Gg   GK+TLL+ l++
  CCD23322.1  44 LPSGsVMAVMGGSGSGKTTLLNVLAS 69 
                 78999*****************9876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.094
                 SS.EEEEEE-TTSSHHHHHHHHH CS
  ABC_ATPase 244 kG.vtlIvGggfhGKsTLLeAle 265
                  G + +I+G+   GKsTLL+ ++
  CCD23322.1 693 PGmINAIMGPSGSGKSTLLNLIS 715
                 566999*************9775 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.8     0.031        11       1      18 [.      52      69 ..      52      82 .. 0.86
   2 ?    6.1   0.1     0.022       8.1       1      20 [.     699     718 ..     699     724 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.031
  ATP_bind_1  1 vvGpaGsGKttfvgalse 18
                v+G+ GsGKtt+ + l++
  CCD23322.1 52 VMGGSGSGKTTLLNVLAS 69
                89**********998875 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.022
  ATP_bind_1   1 vvGpaGsGKttfvgalseil 20 
                 ++Gp GsGK+t+ + +s  +
  CCD23322.1 699 IMGPSGSGKSTLLNLISGRI 718
                 79**********99887665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.4     0.021       7.9      19      40 ..      51      71 ..      43      82 .. 0.79
   2 ?    3.4   0.0      0.11        41      21      41 ..     699     719 ..     683     777 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.021
  Zeta_toxin 19 illgGqpGAGKselaellkdel 40
                 ++ G++G+GK++l++ l+ ++
  CCD23322.1 51 AVM-GGSGSGKTTLLNVLASKI 71
                444.567*********999887 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.11
  Zeta_toxin  21 lgGqpGAGKselaellkdele 41 
                 + G +G+GKs+l++l+  +++
  CCD23322.1 699 IMGPSGSGKSTLLNLISGRIK 719
                 56889**********998874 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1    0.0032       1.2       3      42 ..      49     103 ..      47     169 .. 0.67
   2 ?    0.1   0.0         1   3.7e+02       6      26 ..     699     719 ..     696     743 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0032
     DUF2075   3 vvlVtGvaGtGKtvvllnllael...............eddeeertavylsvNhp 42 
                 v+ V G++G+GKt +l+ l+ ++                +  e++++++++  ++
  CCD23322.1  49 VMAVMGGSGSGKTTLLNVLASKIsgglktegtinyvleGEVTENQHVKMAYLPQQ 103
                 7889******************977666555555555433334444444444444 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 1
     DUF2075   6 VtGvaGtGKtvvllnllaele 26 
                 + G +G+GK+ +l+ +  +++
  CCD23322.1 699 IMGPSGSGKSTLLNLISGRIK 719
                 7899*********99998882 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.4    0.0085       3.1       1      22 [.      49      70 ..      49      81 .. 0.84
   2 ?    1.9   0.0      0.53     2e+02       3      19 ..     698     714 ..     696     723 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0085
        MobB  1 vlgivgksgsGKTtLleklipe 22
                v++++g sgsGKTtLl+ l ++
  CCD23322.1 49 VMAVMGGSGSGKTTLLNVLASK 70
                68899***********988655 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.53
        MobB   3 givgksgsGKTtLlekl 19 
                 +i+g sgsGK tLl+ +
  CCD23322.1 698 AIMGPSGSGKSTLLNLI 714
                 689**********9755 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.2     0.015       5.4       2      40 ..      47      89 ..      46      99 .. 0.77
   2 ?    2.3   0.0      0.38   1.4e+02       7      28 ..     699     720 ..     693     733 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.015
                -EEEEEESSTTSSHHHHHHHHHHH....HHHTT--EEEEEHHH CS
  APS_kinase  2 gvvvwltGlsgsGKstianalekk....LvekgisvylLdGdn 40
                g v+ + G sgsGK+t+ n l++k    L+++g+  y+L+G++
  CCD23322.1 47 GSVMAVMGGSGSGKTTLLNVLASKisggLKTEGTINYVLEGEV 89
                56788899********876666553333889999999999986 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.38
                 EESSTTSSHHHHHHHHHHHHHH CS
  APS_kinase   7 ltGlsgsGKstianalekkLve 28 
                 + G sgsGKst+ n ++ ++++
  CCD23322.1 699 IMGPSGSGKSTLLNLISGRIKQ 720
                 789*********9988776665 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1     0.011       3.9       7      67 ..      51     111 ..      46     124 .. 0.68
   2 ?    4.6   0.0     0.054        20       8      37 ..     699     727 ..     694     743 .. 0.80
   3 ?   -2.5   0.0       7.8   2.9e+03      91     111 ..     915     935 ..     912     937 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.011
                 EEE-STTSSHHHHHHHHHHS..S---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHH CS
       SRPRB   7 llvGlsdsGKTslftrLttd..svkktvtSqessaalkvksekgskltliDfPGheklrqkll 67 
                  ++G s sGKT+l++ L ++     kt   ++  +    + +++++++++ +P ++ l  +l+
  CCD23322.1  51 AVMGGSGSGKTTLLNVLASKisGGLKTEGTINYVLEG--EVTENQHVKMAYLPQQDVLSARLT 111
                 47899**************943333444444444444..447888889999998888877765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.054
                 EE-STTSSHHHHHHHHHHSS---B---SS- CS
       SRPRB   8 lvGlsdsGKTslftrLttdsvkktvtSqes 37 
                 ++G+s sGK +l++ L ++ +k++v S  +
  CCD23322.1 699 IMGPSGSGKSTLLN-LISGRIKQSVFSKFN 727
                 89**********98.567889999998744 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 7.8
                 HHHHHHHHHHHHHHHHHHHTT CS
       SRPRB  91 evkevAEllyeilliteklkd 111
                 e ++vA+++ ++++i++++++
  CCD23322.1 915 EFTNVADFFLDLISINTQNEQ 935
                 6789*********99987654 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  17.6      0.29   1.1e+02     200     314 ..     421     538 ..     418     596 .. 0.70
   2 ?    9.7   5.9    0.0011      0.41     214     320 ..    1097    1201 ..    1087    1255 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.29
  ABC2_membrane_3 200 vsplqywlsk....ilgdflvyllqlllilllafglgipfg..nlglllllfllfglayialgyllsslfknsetaqilifivilllsgffggl 287
                      v+pl++++++    +l+d ++++l++  i++++fg  ++ +   +++ +   +l  ++++ l+++  +++++ ++a+++  +++ +ls+ +g++
       CCD23322.1 421 VTPLAFMTARklslFLSDDILMILIFTTITYFMFG--LEADgaKFFYQFSITFLSQMCCAGLAMVSVAVSRDFSKASLVGNLTFTVLSMSCGFF 512
                      88999999993333444444555555555557***..888877999999999999999999999999998888999999999999999999888 PP

  ABC2_membrane_3 288 fpledlpsalkwifsiiPffapglgll 314
                      +  + +p     ++ +i f+++g g l
       CCD23322.1 513 VNAKVMPV-YVRWTKYIGFTWYGFGAL 538
                      88765555.667899999999887754 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0011
  ABC2_membrane_3  214 flvyllqlllilllafglgipfg..nlglllllfllfglayialgyllsslfknsetaqilifivill..lsgffgglfpledlpsalkwif 301 
                        l++ ++++++++la+g  +p +  n+++ + ++++ + +  alg +  ++f +++ +   + ++++l  ++  + gl++l  +p+ lk + 
       CCD23322.1 1097 SLLASIIYAIFTVLACG--LPRTagNFFANVYCSFIVSGCGEALGIMTNTFFERPGFV---VNCISVLlsIGTQMSGLMSLH-MPKVLKGFN 1182
                       57788888888889999..555555******************************885...444444400466666667776.99******* PP

  ABC2_membrane_3  302 siiPffapglgllrlitgd 320 
                       +++P  + +l +++ ++ d
       CCD23322.1 1183 YLNPVGYTSLIIINFAFPD 1201
                       ****999999999988765 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1      0.03        11       8      27 ..      51      70 ..      47     100 .. 0.85
   2 ?   -0.6   1.5       1.7   6.4e+02     148     190 ..     596     637 ..     589     653 .. 0.68
   3 ?    3.1   0.0      0.13        48       9      30 ..     699     719 ..     695     774 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.03
                EEEEBTTSSCCCCCCTTSSS CS
      Septin  8 mvvGesglGkttlintlfet 27
                 v+G sg Gkttl+n l ++
  CCD23322.1 51 AVMGGSGSGKTTLLNVLASK 70
                488************99765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.7
                 ESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCC CS
      Septin 148 iaKaDtltkeElkefKkkireeleeeeikiyklpdeeededee 190
                 + K D+  ++E+k+ Kkk+ e+ e++ei i  + ++++++ e+
  CCD23322.1 596 LHKVDITLQSEVKSKKKKLDEK-ENKEIMIDPFASISKENSEK 637
                 67999999******99999776.66677776654544443222 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.13
                 EEEBTTSSCCCCCCTTSSSS-- CS
      Septin   9 vvGesglGkttlintlfetdli 30 
                 ++G sg Gk+tl+n +   +++
  CCD23322.1 699 IMGPSGSGKSTLLNLIS-GRIK 719
                 78***********9553.3333 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2      0.81   2.9e+02      23      40 ..      54      71 ..      51      98 .. 0.77
   2 ?   -2.0   0.0       2.8     1e+03     522     556 ..     173     207 ..     167     218 .. 0.83
   3 ?   -3.0   1.2       5.5     2e+03      96     138 ..     605     640 ..     593     672 .. 0.40
   4 ?    8.1   0.1    0.0024      0.89      10      51 ..     688     729 ..     679     753 .. 0.80
   5 ?   -0.0   0.0      0.72   2.6e+02     525     576 ..     829     880 ..     822     895 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.81
      AAA_13 23 GwNGaGKTtLSrllrsle 40
                G  G+GKTtL ++l+s  
  CCD23322.1 54 GGSGSGKTTLLNVLASKI 71
                778*********999854 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.8
      AAA_13 522 seigkdkivviDDPvSSLDsnslfivfsliksrll 556
                 + i++  i ++D P   LD+ s ++v+  +k+ ++
  CCD23322.1 173 QMISNPSIMFLDEPTTGLDAYSAYLVVKTLKKLAI 207
                 5678899********************99999874 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.5
      AAA_13  96 ekieklkkeikkleek..leaaeaqlqkaekekkklekeledeaw 138
                  +++++kk+++++e+k  +    a+++k+++ek+         ++
  CCD23322.1 605 SEVKSKKKKLDEKENKeiMIDPFASISKENSEKE---------ID 640
                 4444444444444333222222222222222222.........21 PP

  == domain 4  score: 8.1 bits;  conditional E-value: 0.0024
      AAA_13  10 aeledfkriNliYGwNGaGKTtLSrllrslelgetepkfang 51 
                 + + + + iN i G  G+GK+tL +l++   +++  +kf+ +
  CCD23322.1 688 NAVFKPGMINAIMGPSGSGKSTLLNLISGRIKQSVFSKFNTS 729
                 55667789********************99888888888765 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.72
      AAA_13 525 gkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHn..leffke 576
                 +   i  +D P S LDs  +  +   +k+ +   +  k ++i  H    e+fke
  CCD23322.1 829 NDPPILLLDEPTSGLDSFTSATILEILKKLA--TEYSKTVIITIHQprSELFKE 880
                 567899***********************99..444556666667533556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       967  (0.053935); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              49  [number of targets reported over threshold]
# CPU time: 1.10u 0.28s 00:00:01.38 Elapsed: 00:00:00.46
# Mc/sec: 8240.42
//
Query:       CCD23323.1  [L=157]
Description: hypothetical protein NDAI_0B02880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1254.13
//
Query:       CCD23324.1  [L=526]
Description: hypothetical protein NDAI_0B02890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-70  236.8   0.0    6.9e-70  235.0   0.0    1.9  2  AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal 
    1.9e-40  138.3   0.0    2.9e-40  137.7   0.0    1.3  1  AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal 
  ------ inclusion threshold ------
      0.053   12.4   0.0      0.094   11.6   0.0    1.3  1  CitF             Citrate lyase, alpha subunit (CitF)
      0.073   12.5   0.0       0.23   10.8   0.0    1.9  2  CoA_trans        Coenzyme A transferase


Domain annotation for each model (and alignments):
>> AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.0   0.0   1.6e-73   6.9e-70       2     198 .]      13     230 ..      12     230 .. 0.98
   2 ?   -1.9   0.0      0.63   2.8e+03      20      43 ..     355     378 ..     350     392 .. 0.77

  Alignments for each domain:
  == domain 1  score: 235.0 bits;  conditional E-value: 1.6e-73
  AcetylCoA_hydro   2 qeeyekklkepeeaaelvkngshielsgftavgtakaipkylakrkvekenvkkkllidlavgavlsagPeeevleekdavlyrpapkqvgell 95 
                      + +y+ k+k+p+++++l+kng+++++sgft+vgt+ka+p +l+ ++ve++n+++kl+++l+vga  sagPee+ ++++d++l+r ap+qvg+++
       CCD23324.1  13 YLPYLEKVKQPKDLIPLFKNGQYLGWSGFTGVGTPKAVPDALI-EHVEQNNLQGKLKFNLFVGA--SAGPEENLWAQHDMILKR-APHQVGKPI 102
                      679****************************************.********************..******************.********* PP

  AcetylCoA_hydro  96 rkainqglvsfvdkhlsevpqklekgfvp........iDvalieataldedGylnlG..vg......vrakKviiEv.......aelvvivvkk 166
                      +kain g ++f+dkhls++pq+l++gf++        +D+ +ieata++edG++++G  vg       +++K iiEv       +++++i+++ 
       CCD23324.1 103 AKAINTGKIKFFDKHLSMFPQDLTYGFYTrertdnkiLDYMIIEATAIKEDGSIVPGpsVGaspefiSVSDKIIIEVntatpsfEGIHDIDMPI 196
                      *********************************************************8888*****999************************* PP

  AcetylCoA_hydro 167 npPrvngydelialdkv..dyivvdpekvvavve 198
                      npP++ +y++++++d++  d+i+vdpekv+a+ve
       CCD23324.1 197 NPPFRVPYPYVKVDDRCgrDSIPVDPEKVIAIVE 230
                      ********************************97 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.63
  AcetylCoA_hydro  20 kngshielsgftavgtakaipkyl 43 
                      +n ++i + g +a++t+  ++ y 
       CCD23324.1 355 NNPEMIRRLGVIAMNTPVEVDIYA 378
                      567899999********9999874 PP

>> AcetylCoA_hyd_C  Acetyl-CoA hydrolase/transferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.7   0.0   6.5e-44   2.9e-40       1     153 [.     331     481 ..     331     482 .. 0.93

  Alignments for each domain:
  == domain 1  score: 137.7 bits;  conditional E-value: 6.5e-44
                      S-HHHHHHHTT.-TTEEE-BHHHHT-HHHHTTSTTEEEEEE-SEEETTS-EESSEC.TTCCTCGGTTHHHHHHHHHHSTT-EEEEE--SEETTT CS
  AcetylCoA_hyd_C   1 Gskklydflde.npkielrpveyvndpeviaqnkkvvsinsalevdltGqvnsesl.ggrvvsGvGgqldFvrgaalskggksiialpStakkg 92 
                      G k+ ++ +++ ++ki+lr++ ++n+pe+i++   v+++n+ +evd+++++ns+++ g+r+++G+Gg+ dF+r+a+l     si++ pS+++++
       CCD23324.1 331 GFKRAFADWENlKHKICLRSQVVSNNPEMIRR-LGVIAMNTPVEVDIYAHANSTNVnGSRMLNGLGGSADFLRNAKL-----SIMHAPSARPTK 418
                      556666666666*******************9.***********************99*******************.....*********976 PP

                      ....TEESEESS-STTSSECE-TTT-SEEEETTEEEE-TT--HHHHHHHHHT.TS-HHHHHHHHHH CS
  AcetylCoA_hyd_C  93 ....eiSrIvpslkegahvtttrhdvdyvvTEyGiadLrgkslreraealik.iAhpdfreeLlee 153
                           iS+Ivp+ +   hv++t+hd+d++vTE+G+adLrg+ +r+ra+++ik +Ahpd++  L+++
       CCD23324.1 419 vdptGISSIVPMAS---HVDQTEHDLDILVTEQGLADLRGLCPRDRAREIIKqCAHPDYKSLLTDY 481
                      444349********...********************************************99876 PP

>> CitF  Citrate lyase, alpha subunit (CitF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.1e-05     0.094     315     403 ..     356     451 ..     344     465 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.1e-05
        CitF 315 kGasvdrldvvilsa.leidtkfnvnvltGsdGvirGasGGhcdtaaaaklsiivaplvr......GriptvveevttvitpGesvdvlvtdvGia 403
                    ++ rl v+ + + +e+d     n        +    GG +d    aklsi+ ap  r        i+++v+    v    + +d+lvt++G+a
  CCD23324.1 356 NPEMIRRLGVIAMNTpVEVDIYAHANSTNVNGSRMLNGLGGSADFLRNAKLSIMHAPSARptkvdpTGISSIVPMASHVDQTEHDLDILVTEQGLA 451
                 556788898887754389988777666555555566678*******************994333333478899999999999999*********98 PP

>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.2e-05      0.23       5      40 ..      24      58 ..      20     110 .. 0.81
   2 ?   -2.2   0.0       0.5   2.2e+03      54     139 ..     361     397 ..     350     427 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.2e-05
                HHHHCTT--TTEEEEE-SBTTBTHHHHHHHHHHHHT CS
   CoA_trans  5 aeavakeikdGmtvavGGFgligiPealiaalarsg 40
                ++ +   +k+G+++  +GF+++g+P+a  +al++  
  CCD23324.1 24 KDLIP-LFKNGQYLGWSGFTGVGTPKAVPDALIEHV 58
                56666.89*****************88888888776 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.5
                 ECCHHHHHTTTEEEEEESCTTBBCEHHHHHHHHTTSSEEEEHHHHHHHHHHHHHHHTEETTEEEESTTTTSHGGTTESEEEEETTE CS
   CoA_trans  54 lglgplllngsvkkviasyggetvnprfgkqflsgelefellpqgtlaerlraGgaglpelgfltntgigtlvapklkkvpgfgGa 139
                 + lg++++n  v+ +i+ +  +  +++ g+++l+g                                                 G 
  CCD23324.1 361 RRLGVIAMNTPVEVDIYAHANS--TNVNGSRMLNGLG-----------------------------------------------GS 397
                 5566666666666666655444..5555555555533...............................................33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4171.70
//
Query:       CCD23325.1  [L=352]
Description: hypothetical protein NDAI_0B02900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-68  230.8   0.0    2.2e-68  230.5   0.0    1.1  1  Pkinase        Protein kinase domain
      7e-32  110.7   0.0    9.2e-32  110.3   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
     0.0015   17.6   2.1      0.004   16.2   2.1    1.5  1  Haspin_kinase  Haspin like kinase domain
     0.0031   16.9   0.3     0.0049   16.3   0.3    1.2  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.05   12.4   0.2      0.069   12.0   0.2    1.2  1  YukC           WXG100 protein secretion system (Wss), protein
      0.095   12.0   0.1       0.21   10.9   0.1    1.6  1  Kinase-like    Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.5   0.0   7.4e-72   2.2e-68       2     264 .]      14     308 ..      13     308 .. 0.89

  Alignments for each domain:
  == domain 1  score: 230.5 bits;  conditional E-value: 7.4e-72
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHSS- CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladllerkgsl 95 
                 + ++ lGeG++G+V +av+k tg+ivA+Kki+  ++      ++lrEik+lk+++h+ni+ ++++ +       +e+y+++e+++++ l+++++  ++l
  CCD23325.1  14 QLKSLLGEGAYGVVCSAVHKPTGEIVAIKKIEPFDKPL-FALRTLREIKLLKHFQHENIISIFDIQRPesfenFNEVYIIQELMQTD-LHRVIS-TQNL 109
                 67889**************************9876555.5579*******************987555444449***********76.*****8.589* PP

                 -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS...........BCTTTSCGGGS-HHHH.TTSCBSHHHHHHH CS
     Pkinase  96 seeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk...........ltsfvgtseYlAPEvl.keneyskkvDvWs 182
                 ++++++ +++q+l++++ lH  ++iHrDlKp+N+Li+++ +lKi+DFGla+ +e++ +           +t++v+t++Y+APEv+ ++ +ysk++D+Ws
  CCD23325.1 110 TDDHIQYFIYQTLRAVKTLHGSNVIHRDLKPSNLLINSNCDLKICDFGLARIIEEDREdddqmtqlqngMTEYVATRWYRAPEVMlTAAKYSKAMDIWS 208
                 *******************************************************9999*************************9999*********** PP

                 HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT...SHH...HHHTTS........................-HHHHHHHHHHT-SSGCCSTT CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvekeldqlekilkilg...etkeklpeasei........................seeakdllkkllkkdpkkRlt 254
                 +G+il+el++++p+f+   gk+      +ql  i+ ++g   e  e+l+  ++                         ++  +dll+++l  dpkkR+t
  CCD23325.1 209 CGCILAELFMKRPIFP---GKD----YRHQLLLIFGLIGtpfE--EDLNCIESRrareyimtlpryepvplskvlpqvNPLGIDLLQRMLIFDPKKRIT 298
                 ****************...444....55666667777775331..33333332245666799999999******************************* PP

                 HHHHHTSGGG CS
     Pkinase 255 aeellqhpyl 264
                 aee+l+hpyl
  CCD23325.1 299 AEEALSHPYL 308
                 ********97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.3   0.0   3.1e-35   9.2e-32       2     200 ..      14     218 ..      13     233 .. 0.87

  Alignments for each domain:
  == domain 1  score: 110.3 bits;  conditional E-value: 3.1e-35
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.....SSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.....keepllivteyvkgGdLlkfLrk 94 
                  +l++ lGeGa+G V+++  k     + + Va+K+++   +     + l+e+k++k+++h+ni+++  +       + ++++i+ e+++  dL+  + +
   CCD23325.1  14 QLKSLLGEGAYGVVCSAVHK----PTGEIVAIKKIEPFDKPLFALRTLREIKLLKHFQHENIISIFDIQRpesfeNFNEVYIIQELMQT-DLHRVIST 106
                  67889************999....88999******999999999***********************999655544566********86.9*****99 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.......EETTSSTSGGGGS.-HHHHH.HSEEE CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey.......vkkeeaklpvkWm.apEslk.ekkft 183
                  +   +lt +++  f++q  ++++ L+  +++Hrdl   N L+++n   ki+DfGLar ie+d e        ++  ++ +  +W+ apE++  + k++
   CCD23325.1 107 Q---NLTDDHIQYFIYQTLRAVKTLHGSNVIHRDLKPSNLLINSNCDLKICDFGLARIIEEDREDddqmtqlQNGMTEYVATRWYrAPEVMLtAAKYS 201
                  8...9****************************************************99654433233344344455668999998***9751567** PP

                  HHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 184 sksDvWsfGvllwEift 200
                  ++ D+Ws G +l E+f 
   CCD23325.1 202 KAMDIWSCGCILAELFM 218
                  ***************97 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.1   1.3e-06     0.004     178     258 ..      82     165 ..      51     177 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.3e-06
  Haspin_kinase 178 fyseqqlflvlllkdkGtdLeevklkswkqalsifwqivkiLyvaEtkf..eFEHRdLhldniLvdknlnvtlidlklsRle..s 258
                    +++ + + ++++ + + tdL +v  ++  +  +i + i ++L ++ t    +  HRdL+  n L+++n    ++d+ l+R+   +
     CCD23325.1  82 SFE-NFNEVYIIQELMQTDLHRVISTQNLTDDHIQYFIYQTLRAVKTLHgsNVIHRDLKPSNLLINSNCDLKICDFGLARIIeeD 165
                    333.33445666666778888886666666678888888888888776622567**************************97432 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   1.6e-06    0.0049      55     187 ..      53     176 ..      44     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.6e-06
         Kdo  55 rtravrEfrllkrLeeagvavpkpvaagavkvgle..yrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknill 151
                 ++r  rE++llk ++++ +  +  +   +    +e      ++ e ++   dL  ++ + ++l +   +  + ++ r+++ lh  +v H+dl + n+l+
  CCD23325.1  53 ALRTLREIKLLKHFQHENIISIFDIQRPES---FEnfNEVYIIQELMQ--TDLHRVIST-QNLTDDHIQYFIYQTLRAVKTLHGSNVIHRDLKPSNLLI 145
                 678889999999999998886555544333...333145566666654..599999997.6688888888888999*********************** PP

         Kdo 152 qqeeeeeaeiwliDldkarlrlradrwrekdLarLk 187
                 + +      + + D+  ar    +dr  +  + +L+
  CCD23325.1 146 NSNC----DLKICDFGLARIIE-EDREDDDQMTQLQ 176
                 9997....66777887766555.6666666666666 PP

>> YukC  WXG100 protein secretion system (Wss), protein YukC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   2.3e-05     0.069      61     117 ..     115     173 ..      57     187 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
                 HHHHHH.GGGGGGGG.GSSEE---SGGGEEE-TTS-EEES--EETTTBS-----HHHHH CS
        YukC  61 lrlaln.ikaleell.ssrltlilhPeNlvfdknlepkilhrgvkeslppyeldeeell 117
                   + ++ ++a+++l+ s+ ++  l+P+Nl+++ n + ki   g+  ++++   d ++++
  CCD23325.1 115 QYFIYQtLRAVKTLHgSNVIHRDLKPSNLLINSNCDLKICDFGLARIIEEDREDDDQMT 173
                 445556688998866155689************************99998888877765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1     7e-05      0.21     127     190 ..      92     158 ..      61     217 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7e-05
  Kinase-like 127 lnkvlqkrset...hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggfta 190
                  +++++q    +    ++l +   ++   q +r +  L+   ++h ++++ nll + +  l++ +f+ 
   CCD23325.1  92 IQELMQTDLHRvisTQNLTDDHIQYFIYQTLRAVKTLHGSNVIHRDLKPSNLLINSNCDLKICDFGL 158
                  444444433333334444444444455999**********************************973 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2610.31
//
Query:       CCD23326.1  [L=1586]
Description: hypothetical protein NDAI_0B02910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.3e-209  695.8  19.4   3.1e-142  474.5   4.9    2.2  2  Sortilin-Vps10  Sortilin, neurotensin receptor 3,
    2.9e-71  239.3  11.3    5.9e-38  130.9   0.9    2.5  2  Sortilin_C      Sortilin, neurotensin receptor 3, C-terminal
    1.7e-11   42.3  46.7       0.21   11.7   0.1   13.0 13  BNR             BNR/Asp-box repeat
    1.2e-05   24.7   4.5       0.11   11.7   0.2    4.8  4  BNR_2           BNR repeat-like domain
     0.0013   18.7   5.5        3.5    7.7   0.0    5.3  5  CHB_HEX_C       Chitobiase/beta-hexosaminidase C-terminal dom
     0.0098   15.9   2.3         11    6.0   0.0    4.8  6  Mo-co_dimer     Mo-co oxidoreductase dimerisation domain
  ------ inclusion threshold ------
       0.18   12.5   0.7          4    8.1   0.1    2.8  3  DUF2147         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> Sortilin-Vps10  Sortilin, neurotensin receptor 3,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.3   6.5   1.2e-70   3.1e-67       1     445 [.      59     556 ..      59     557 .. 0.77
   2 !  474.5   4.9  1.2e-145  3.1e-142       2     446 .]     772    1218 ..     771    1218 .. 0.95

  Alignments for each domain:
  == domain 1  score: 227.3 bits;  conditional E-value: 1.2e-70
                     EEEEEESSTTSS-EE-GGGGTTEEBE-EEE-STTS.--EEEEEE...S-EEEEESSTTSSEEEEE-SS-BS......S--EEESSETTEEEEE.. CS
  Sortilin-Vps10   1 sevyiSeDeGktwkkvkeklkgeaiqeivvhpfdk.kkaylltd...skklyvttDrGktwkkfklpfkpsl...saeplsfhakdkdwlialge 88 
                     s++++Se++G++w+ +ke +k++++  ++v++f++ ++a++ ++   ++ +y+t+D+Gktwk+ k+p + ++   ++ ++ +h+++k++lia  +
      CCD23326.1  59 SNLFRSENNGESWNPIKE-IKDKVYW-VHVDEFNShDRAFAYSEsdkTNIIYITEDQGKTWKSSKVPMDSKKtsiHGCHVLTHPTNKNYLIARCT 151
                     589*************97.5556665.77777775267777777888899****************99988888999****************98 PP

                     .....BTTS-..............EEEESSTTSSEEEEES.SEEEEEE-S....................TT-EEEEE-SSS-TTTTTTSEEEEE CS
  Sortilin-Vps10  89 kkeskdckkk..............ayystdggkswkklqe.svkkcewakss...............kkkeekilceekeeeseseekkklrlvs 153
                      ++ +  +k+              +++s++ gks +k++  s+kk+e + s+                +++ +++c+ +  e+   +k++  + +
      CCD23326.1 152 ACDASASSKTlkgkytsntrcetiTFLSQNLGKSYNKVEPpSIKKIESTISTeticrfmrntknsqlGDSDATVVCSYDIIEQ---PKNSPIIKT 243
                     84444444444444444444445588888888888887432555544422222233333333566677777788887776665...333334444 PP

                     ESSTTSS-...EEEE.......EEEEEEEEETTEEEEEEE-...TTSS-EEEEEESSTSS-EE-SSS.-B-TT--.EEEEEEESSEEEEEEE-SS CS
  Sortilin-Vps10 154 sddffksk...kelk......segvvsfavvkeflvvavks...eetselalyvSldgkkfaeaefpskkleeka.ytvlessehsiflavttss 235
                     +++ff++    k++k       + + s+a++k+ +vv +++   +++s  +l+vS+dg +f+ea++p ++l+++    + e +  +i+l ++ ++
      CCD23326.1 244 TSSFFTTIdggKTIKqydifkDKAISSYAIKKSNIVVLTQEdkyNRHSAKKLWVSKDGISFKEAYLP-TQLRYTVaGMIKEDDFGKIILPIRRQQ 337
                     44455544233222255588899****************99777778999*****************.88876651566678889**99995443 PP

                     ......ST.SEEEEEEE-TTSSCEEEEEEEEB-TTTS-B--EEETTSTTEEEEEEE-T...............TS-EEEEEESSTTS-EEEEE-- CS
  Sortilin-Vps10 236 ......dk.elgsllkSnsnGtsfvlslenvnrneegyvdfekvegleGvilanvvknaeev.......kkgakkklktkItfddGrtWellkpp 316
                           d+ ++ ++l+S+s+G++f+   + v ++++g++ +++ ++l+G+++ +  + ++         +++++++ +tkIt d+G+tW+ lk+ 
      CCD23326.1 338 sattddDTsTVAEMLVSDSTGLKFTP-FDWVPQDTQGWANLYMPKELKGTMIGTFASMMRRFgrkhkgsSNSTDERGVTKITVDNGKTWSNLKVV 431
                     222222333599*************6.899*********************9988887666666677778888899****************975 PP

                     TTS...SSTTT-SSSSB-EEEEE-HHHHHTT-S-SS--B--TTSTT-EEEEEEE..ESSHHSS.S-EEEEESSSSSS-EEEESS-EEEEEEGGGT CS
  Sortilin-Vps10 317 dkd...kygcsskklekcsLhLhsyteelerknvgrkvfSspsApGlimgvGnv..GkslksyeeadtfiSrDaGltWkevlkgahkyefGDqGs 406
                     d     +y c+ ++ e+csL++ s ++    ++       +p  pG+++ +G v  G+sl+   + +tfiS+D+GltW+++++ + +y++GD+ +
      CCD23326.1 432 DPAnkdSYPCNIDDVEHCSLQILSPFQ----TD------AEP-SPGILIRIGYVsdGNSLEIL-DNKTFISTDGGLTWRMIFDYPVIYAIGDSAN 514
                     543333999***************987....33......357.89*******99555666665.******************************* PP

                     EEEEEE-....SSS-B-EEEEESSTTSSEEEEE--SS-BEEEE CS
  Sortilin-Vps10 407 iivavkd....eeketkelsYSlDeGktWeeykfsdekirvld 445
                     iivav+     ++++ +e++YSlD+G+tW+ey+++ e+i +l+
      CCD23326.1 515 IIVAVPFdpneDNDPESEFYYSLDQGETWNEYQLE-EPIIPLE 556
                     ******977765689********************.9998876 PP

  == domain 2  score: 474.5 bits;  conditional E-value: 1.2e-145
                      EEEEESSTTSS-EE-GGGGTTEEBE-EEE-STTS--EEEEEES-EEEEESSTTSSEEEEE-SS-BS...S--EEESSETTEEEEE........ CS
  Sortilin-Vps10    2 evyiSeDeGktwkkvkeklkgeaiqeivvhpfdkkkaylltdskklyvttDrGktwkkfklpfkpslsaeplsfhakdkdwlialgek....k 90  
                      + +iS+D+G+t +k++ +++++ i e+v++++++++ayl++d+++l+vt+D G+t++++klp+  +  + pl+fh+kd++++i++g k     
      CCD23326.1  772 NYFISHDSGQTVTKIE-SMDQKII-EVVFNTYFNSSAYLFGDGGNLFVTNDGGHTITSTKLPEGVQ-LGFPLDFHSKDPNTFIYYGGKncdsI 861 
                      679************8.4777777.6****************************************.6******************9998888 PP

                      ...BTTS-EEEESSTTSSEEEEESSEEEEEE-S........TT-EEEEE-SSS-TTTTTTSEEEEEESSTTSS-EEEE.EEEEEEEEETTEEE CS
  Sortilin-Vps10   91 eskdckkkayystdggkswkklqesvkkcewakss...kkkeekilceekeeeseseekkklrlvssddffkskkelksegvvsfavvkeflv 180 
                       sk+c+++ay+++dggk++++l +++ +ce+a s+    ++e+ i+c++ke++      +k++lvss+d+fk++ke+  +++ +++  ++f +
      CCD23326.1  862 LSKECHAVAYITRDGGKTFTELLDNTIHCEFAGSQyehPSDENLIICQVKEKGF-----TKRSLVSSTDYFKNNKEIIFDDILGYMSSGKFSI 949 
                      99*****************************9988999999********98875.....899************99999************** PP

                      EEEE-TTSS-EEEEEESSTSS-EE-SSS...-B-TT--EEEEEEESSEEEEEEE-SS..STSEEEEEEE-TTSSCEEEEEEEEB-TTTS-B-- CS
  Sortilin-Vps10  181 vavkseetselalyvSldgkkfaeaefp..skkleekaytvlessehsiflavttss..dkelgsllkSnsnGtsfvlslenvnrneegyvdf 269 
                      vav++ e +el++yv+ldgk+faea++p   +k e++a+tvl+ +++si l+ +t++  dk +g llkSnsnGtsfv     vnr ++g+vdf
      CCD23326.1  950 VAVTHGE-NELRAYVTLDGKEFAEAKLPkdLEKFEQEAFTVLNGDPSSILLHFSTNHafDKGFGRLLKSNSNGTSFVTLEPGVNRVNSGLVDF 1041
                      *****87.58******************766666*******************988744567***************98888*********** PP

                      EEETTSTTEEEEEEE-T.........TS-EEEEEESSTTS-EEEEE--TTS....SSTTT-SSSSB-EEEEE-HHHHHTT-S-SS--B--TTS CS
  Sortilin-Vps10  270 ekvegleGvilanvvknaeev.kkgakkklktkItfddGrtWellkppdkd....kygcsskklekcsLhLhsyteelerknvgrkvfSspsA 357 
                      ek++gleGv+++nvv+n+++v +k+a+kklktkItf+dG++W++lkpp++d    ky+c+s++l++csL+Lh+yt+   r+++ r+++Ss sA
      CCD23326.1 1042 EKIQGLEGVMVINVVDNMDDVrTKNADKKLKTKITFNDGSDWTFLKPPARDsegkKYNCKSNSLSSCSLNLHGYTD---RTDI-RDTYSSGSA 1130
                      *********************99****************************9998888****************99...7888.99******* PP

                      TT-EEEEEEEESSHHSS.S-EEEEESSSSSS-EEEESS-EEEEEEGGGTEEEEEE-SSS-B-EEEEESSTTSSEEEEE--SS-BEEEEE CS
  Sortilin-Vps10  358 pGlimgvGnvGkslksyeeadtfiSrDaGltWkevlkgahkyefGDqGsiivavkdeeketkelsYSlDeGktWeeykfsdekirvldl 446 
                      +G +++vGnvG+sl +y+e++tf++ D+G+tWkev+kg++++e+GD+G+i+v+v+d++ +++++s+S+D+GktW +ykf+d k++++d+
      CCD23326.1 1131 IGYMFAVGNVGESLLPYDECSTFLTIDGGATWKEVRKGPYQWEYGDHGGILVLVPDKK-ASDTISFSIDSGKTWVDYKFTDAKVTISDI 1218
                      *********************************************************7.**************************9886 PP

>> Sortilin_C  Sortilin, neurotensin receptor 3, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   3.7   8.3e-36   2.1e-32       1     170 []     560     721 ..     560     721 .. 0.88
   2 !  130.9   0.9   2.3e-41   5.9e-38       1     163 [.    1220    1383 ..    1220    1389 .. 0.86

  Alignments for each domain:
  == domain 1  score: 112.8 bits;  conditional E-value: 8.3e-36
  Sortilin_C   1 tepdstslkflllgksssed.....kekvvvislDFsklfe.rkCkeeeDyekwsareeekkekCllGhkqkyrrrkkdakCfvgekfkdpkv.eenCe 92 
                 t+pd++ l+f++ g   + +      +  +++++DFs+l++ + C+ ++D+e+w++ +     +C++G+k++y rrk+++kC+ ++ f+d +  e+ C+
  CCD23326.1 560 TTPDGSGLNFIINGFLVTANpfdenGTGNFIYAIDFSELYDkKLCT-KDDFEQWYLGN----GNCINGAKYSYPRRKQNSKCIARKLFEDLELtEQVCD 653
                 799*********9999888888885478999*********9667*8.77*******97....59**************************8887999*8 PP

  Sortilin_C  93 .CteeDfeCdynfereesegkCvlaeklevpdeeekevCkkkkkkeksylkssgyrkipgntCeggkekdkdekvekpC 170
                  Ct++D+eC+++f+++++ gkCv++ +l +++++    C++ +k ++ +lk  ++++i g++C++       ++v+++C
  CCD23326.1 654 eCTNADYECSFEFIKDNE-GKCVPDYNLLTMSGA----CSA-TK-KD-TLKIAPMQLITGDKCKKP---LDISPVDVSC 721
                 8**************876.9************88....*44.33.33.5889************99...4567788877 PP

  == domain 2  score: 130.9 bits;  conditional E-value: 2.3e-41
  Sortilin_C    1 tepdstslkflllgksssedkekvvvislDFsklferkCke......eeDyekwsareeekkekCllGhkqkyrrrkkdakCfvgekfkd..pkvee 89  
                  t+p+++ ++fll+g s s + ++ +++++DF+++f+r+C        ++D+ +++++ +  + +Cl+Gh+++y ++  +++Cf+g+      +++++
  CCD23326.1 1220 TVPQDSAMRFLLIGASPSVKGSSAKTFTIDFTGIFPRQCIFdfnnqdSDDFSYFKVNPS--RAECLFGHQKEYLKKI-HNNCFIGNVPLAdySRITK 1313
                  79***************99889999**************77999886669999999974..78***********988.99******766555666** PP

  Sortilin_C   90 nCeCteeDfeCdynfereesegkCvlaeklevpdeeekevCkkkkkkeksylkssgyrkipgntCeggkekdkd 163 
                  nC+C ++DfeCdynf+++++ g+C+l+e+l++ d   ++vCk +++    + +++gyrkip +tC+gg + d+ 
  CCD23326.1 1314 NCSCIRADFECDYNFYKAKD-GTCKLVEGLDPID--PSDVCKINQDLI-EFSEPTGYRKIPLSTCQGGLRLDAS 1383
                  *****************866.9************..559**7755555.5999***************555443 PP

>> BNR  BNR/Asp-box repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.013        34       1      11 [.      62      72 ..      62      73 .. 0.88
   2 !    9.5   0.2   0.00044       1.1       1      11 [.     108     118 ..     108     119 .. 0.93
   3 ?   -1.1   0.0       1.4   3.6e+03       1      11 [.     177     187 ..     177     188 .. 0.84
   4 ?    2.4   0.1     0.098   2.5e+02       1      11 [.     248     258 ..     248     259 .. 0.84
   5 !    8.2   0.2    0.0012       3.1       2      11 ..     417     426 ..     416     427 .. 0.91
   6 !   11.1   0.1   0.00013      0.34       1      11 [.     488     498 ..     488     499 .. 0.91
   7 !   11.7   0.1   8.1e-05      0.21       1      11 [.     534     544 ..     534     545 .. 0.93
   8 ?    1.1   0.1      0.26   6.6e+02       1       9 [.     774     782 ..     774     782 .. 0.93
   9 ?    1.1   0.2      0.25   6.5e+02       1      10 [.     816     825 ..     816     827 .. 0.85
  10 !    7.7   0.1    0.0017       4.3       1      11 [.     871     881 ..     871     882 .. 0.92
  11 ?   -2.0   0.6       2.8   7.1e+03       2      11 ..    1075    1084 ..    1074    1085 .. 0.88
  12 !    6.7   0.0    0.0037       9.6       1      11 [.    1153    1163 ..    1153    1164 .. 0.87
  13 ?    3.4   0.4     0.047   1.2e+02       2      10 ..    1195    1203 ..    1194    1205 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.013
                EEESSTTSS-E CS
         BNR  1 yyStDgGktWs 11
                + S ++G++W+
  CCD23326.1 62 FRSENNGESWN 72
                689*******7 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00044
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 y++ D+GktW+
  CCD23326.1 108 YITEDQGKTWK 118
                 89********8 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.4
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 + S++ Gk+++
  CCD23326.1 177 FLSQNLGKSYN 187
                 67******987 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.098
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 +++ DgGkt +
  CCD23326.1 248 FTTIDGGKTIK 258
                 6899****975 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0012
                 EESSTTSS-E CS
         BNR   2 yStDgGktWs 11 
                 ++ D+GktWs
  CCD23326.1 417 ITVDNGKTWS 426
                 799******8 PP

  == domain 6  score: 11.1 bits;  conditional E-value: 0.00013
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 ++StDgG tW 
  CCD23326.1 488 FISTDGGLTWR 498
                 79********7 PP

  == domain 7  score: 11.7 bits;  conditional E-value: 8.1e-05
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 yyS D+G+tW+
  CCD23326.1 534 YYSLDQGETWN 544
                 9*********7 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.26
                 EEESSTTSS CS
         BNR   1 yyStDgGkt 9  
                 ++S+D G+t
  CCD23326.1 774 FISHDSGQT 782
                 79*****98 PP

  == domain 9  score: 1.1 bits;  conditional E-value: 0.25
                 EEESSTTSS- CS
         BNR   1 yyStDgGktW 10 
                 +++ DgG t 
  CCD23326.1 816 FVTNDGGHTI 825
                 79*****996 PP

  == domain 10  score: 7.7 bits;  conditional E-value: 0.0017
                 EEESSTTSS-E CS
         BNR   1 yyStDgGktWs 11 
                 y+++DgGkt++
  CCD23326.1 871 YITRDGGKTFT 881
                 89*******97 PP

  == domain 11  score: -2.0 bits;  conditional E-value: 2.8
                  EESSTTSS-E CS
         BNR    2 yStDgGktWs 11  
                  ++++ G  W+
  CCD23326.1 1075 ITFNDGSDWT 1084
                  89****9997 PP

  == domain 12  score: 6.7 bits;  conditional E-value: 0.0037
                  EEESSTTSS-E CS
         BNR    1 yyStDgGktWs 11  
                  + + DgG tW+
  CCD23326.1 1153 FLTIDGGATWK 1163
                  5799******8 PP

  == domain 13  score: 3.4 bits;  conditional E-value: 0.047
                  EESSTTSS- CS
         BNR    2 yStDgGktW 10  
                  +S D GktW
  CCD23326.1 1195 FSIDSGKTW 1203
                  799****** PP

>> BNR_2  BNR repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.2   4.4e-05      0.11      84     209 ..      61     197 ..      48     209 .. 0.66
   2 !    8.0   0.1   0.00063       1.6      85     211 ..     296     438 ..     271     447 .. 0.71
   3 ?   -0.1   0.0      0.18   4.7e+02     133     153 ..     526     546 ..     486     565 .. 0.59
   4 ?    1.7   0.0     0.051   1.3e+02     174     218 ..    1179    1223 ..    1148    1242 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.4e-05
                 EEEESSTTSS----EHHHGGEEEEEE-SS--..EE--T--EEEEEE..SS--EEEEEEEESSTTSS-EE----S..SSEEEEEEEE.EEETTEEEEEEE CS
       BNR_2  84 rvtSkDdGktWsaprrlpkspflnisgpvknkpiqladGrlilPsshelagkwrallelsddggktWkkgrvve..qisgeiqpsilvekdgslvalaR 180
                   +S+++G++W+  ++++++     +  v+ + +  +d+ +    s     +   ++++++d+gktWk ++v+   ++++     +l+++ ++ +++aR
  CCD23326.1  61 LFRSENNGESWNPIKEIKDK-----VYWVHVDEFNSHDRAFAYSES-----DKTNIIYITEDQGKTWKSSKVPMdsKKTSIHGCHVLTHPTNKNYLIAR 149
                 57999999999999999999.....777888888999999865433.....45789999999*****99998877533233335566677777777777 PP

                 E......................EEEEEEESSTTSS-EEE-EEEEE-- CS
       BNR_2 181 s.rka..................aileseSedgGetWskveltslpnp 209
                    ++                    ++  S++ G++++kve+ s+++ 
  CCD23326.1 150 CtACDasassktlkgkytsntrcETITFLSQNLGKSYNKVEPPSIKKI 197
                 644443333444444444443344555556666666666666665555 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00063
                 EEESSTTSS----EHHHGGEEEEEE-SS--..EE--T--EEEEEE........SS--EEEEEEEESSTTSS.....-EE----SSSEEEEEEEE.EEET CS
       BNR_2  85 vtSkDdGktWsaprrlpkspflnisgpvknkpiqladGrlilPsshe......lagkwrallelsddggkt.....Wkkgrvveqisgeiqpsilvekd 172
                   SkD G +++++  lp++ +  + g++k      + G++ilP++ +       ++   a + +sd++g+      W  ++ +  +++   p +l  ++
  CCD23326.1 296 WVSKD-GISFKEA-YLPTQLRYTVAGMIKE----DDFGKIILPIRRQqsattdDDTSTVAEMLVSDSTGLKftpfdWVPQDTQ-GWANLYMPKELKGTM 387
                 56666.8888764.6777777778888888....4579999995544455555555577777888888888778887777776.666777777776555 PP

                 T.EEEEEEEE..............EEEEEEESSTTSS-EEE-EEEEE---- CS
       BNR_2 173 g.slvalaRs..rka.........aileseSedgGetWskveltslpnpns 211
                       ++R+  rk+         + ++  + d+G+tWs++++ +  n +s
  CCD23326.1 388 IgTFASMMRRfgRKHkgssnstdeRGVTKITVDNGKTWSNLKVVDPANKDS 438
                 446666666665444568888998889999***************999987 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.18
                 S--EEEEEEEESSTTSS-EE- CS
       BNR_2 133 agkwrallelsddggktWkkg 153
                 ++++++ +++s d+g tW++ 
  CCD23326.1 526 DNDPESEFYYSLDQGETWNEY 546
                 334444455555555555544 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.051
                  EEEEEEEE...EEEEEEESSTTSS-EEE-EEEEE----....... CS
       BNR_2  174 slvalaRsrkaaileseSedgGetWskveltslpnpnsgidavtl 218 
                   + +l+ ++ka    s S d+G+tW + + t+ ++  s i  v +
  CCD23326.1 1179 GILVLVPDKKASDTISFSIDSGKTWVDYKFTDAKVTISDIVTVPQ 1223
                  455555555666667889999999999999999988886655553 PP

>> CHB_HEX_C  Chitobiase/beta-hexosaminidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.17   4.4e+02      37      60 ..     107     128 ..     104     136 .. 0.80
   2 ?    0.8   0.0      0.19   4.8e+02      39      55 ..     417     433 ..     414     441 .. 0.81
   3 !    7.7   0.0    0.0014       3.5      39      56 ..     535     552 ..     530     564 .. 0.87
   4 ?   -2.4   0.0       1.9   4.9e+03      40      51 ..    1155    1166 ..    1154    1173 .. 0.81
   5 !    5.9   0.0    0.0048        12      36      64 ..    1192    1221 ..    1190    1227 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.17
   CHB_HEX_C  37 ieYsldggetwqkytayepvavsg 60 
                 i  + d+g+tw+ ++   p+ +++
  CCD23326.1 107 IYITEDQGKTWKSSK--VPMDSKK 128
                 56689********99..7887776 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.19
   CHB_HEX_C  39 Ysldggetwqkytayep 55 
                  ++d+g+tw++ ++ +p
  CCD23326.1 417 ITVDNGKTWSNLKVVDP 433
                 699*******9996566 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0014
   CHB_HEX_C  39 Ysldggetwqkytayepv 56 
                 Ysld+getw++y+ +ep+
  CCD23326.1 535 YSLDQGETWNEYQLEEPI 552
                 *************87886 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.9
   CHB_HEX_C   40 sldggetwqkyt 51  
                  ++dgg+tw+++ 
  CCD23326.1 1155 TIDGGATWKEVR 1166
                  68******9987 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.0048
   CHB_HEX_C   36 tieYsldggetwqkytay.epvavsgkvkl 64  
                  ti +s+d g+tw +y+ + + v++s+ v +
  CCD23326.1 1192 TISFSIDSGKTWVDYKFTdAKVTISDIVTV 1221
                  699*************99999999986655 PP

>> Mo-co_dimer  Mo-co oxidoreductase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0043        11      35      70 ..      95     129 ..      81     147 .. 0.83
   2 ?    3.8   0.0     0.021        54      43      71 ..     412     438 ..     400     456 .. 0.74
   3 ?   -3.1   0.0       2.8   7.1e+03      49      60 ..     488     499 ..     472     500 .. 0.76
   4 ?    0.5   0.0      0.23   5.8e+02      51      65 ..     536     550 ..     534     558 .. 0.88
   5 ?   -2.7   0.0       2.1   5.4e+03      51      61 ..    1155    1165 ..    1154    1169 .. 0.85
   6 ?   -1.8   0.0       1.2     3e+03      48      63 ..    1193    1208 ..    1191    1217 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0043
                  EEEE-STT--EEEEEEESSTTSS-EE-EEESSSSS- CS
  Mo-co_dimer  35 GyaysGgGrritrvevsldkGksWklaeieyeedke 70 
                   +ays    + + + ++ d+Gk+Wk +++  + +k+
   CCD23326.1  95 AFAYSESD-KTNIIYITEDQGKTWKSSKVPMDSKKT 129
                  57888766.677899************999887776 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.021
                  --EEEEEEESSTTSS-EE-EEESSSSS-- CS
  Mo-co_dimer  43 rritrvevsldkGksWklaeieyeedker 71 
                  r +t+  +++d+Gk+W+  ++  +++k  
   CCD23326.1 412 RGVTK--ITVDNGKTWSNLKVVDPANKDS 438
                  55655..699******9998887776654 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.8
                  EEESSTTSS-EE CS
  Mo-co_dimer  49 evsldkGksWkl 60 
                   +s d+G +W++
   CCD23326.1 488 FISTDGGLTWRM 499
                  589*******86 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.23
                  ESSTTSS-EE-EEES CS
  Mo-co_dimer  51 sldkGksWklaeiey 65 
                  sld+G++W+  ++e+
   CCD23326.1 536 SLDQGETWNEYQLEE 550
                  89*******998876 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 2.1
                   ESSTTSS-EE- CS
  Mo-co_dimer   51 sldkGksWkla 61  
                   ++d+G++Wk +
   CCD23326.1 1155 TIDGGATWKEV 1165
                   89******976 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 1.2
                   EEEESSTTSS-EE-EE CS
  Mo-co_dimer   48 vevsldkGksWklaei 63  
                   +  s+d Gk+W   + 
   CCD23326.1 1193 ISFSIDSGKTWVDYKF 1208
                   56799******86665 PP

>> DUF2147  Uncharacterized protein conserved in bacteria (DUF2147)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         7   1.8e+04      76      94 ..     112     130 ..      95     139 .. 0.56
   2 ?    8.1   0.1    0.0016         4       3      87 ..     366     445 ..     365     455 .. 0.69
   3 ?    1.1   0.0      0.23     6e+02      76      99 ..    1093    1116 ..    1038    1123 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7
     DUF2147  76 esGktYkckitlkdgnkLe 94 
                 ++Gkt+k++    d++k  
  CCD23326.1 112 DQGKTWKSSKVPMDSKKTS 130
                 4455555444444444444 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0016
     DUF2147   3 WktedgkaksvveiykcgkklcGkivklkeka.kkdaknpdgalrnrpllGleilkglkkdgegewegGkiydpesGktYkckitl 87 
                 W  +d +  ++ ++y  ++ l G+++ + ++  ++ +++++g+ ++    G++ ++   ++g+ +w++ k++dp++ + Y c+i  
  CCD23326.1 366 WVPQDTQ--GWANLYMPKE-LKGTMIGTFASMmRRFGRKHKGSSNSTDERGVTKIT--VDNGK-TWSNLKVVDPANKDSYPCNIDD 445
                 5555544..4555555444.555555555444477788888888888888888776..45666.7*****************9975 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.23
     DUF2147   76 esGktYkckitlkdgnkLevrGyi 99  
                   +Gk+Y+ck +  ++ +L+++Gy 
  CCD23326.1 1093 SEGKKYNCKSNSLSSCSLNLHGYT 1116
                  479999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1586 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.43
# Mc/sec: 11066.08
//
Query:       CCD23327.1  [L=95]
Description: hypothetical protein NDAI_0B02920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 752.68
//
Query:       CCD23328.1  [L=556]
Description: hypothetical protein NDAI_0B02930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-12   46.6   0.0    6.2e-12   45.5   0.0    1.5  1  Exo_endo_phos    Endonuclease/Exonuclease/phosphatase family
    2.5e-10   40.3   3.8    3.3e-10   39.9   0.3    2.6  3  zf-GRF           GRF zinc finger
     0.0021   17.9   0.0        1.6    8.6   0.0    2.7  2  Exo_endo_phos_2  Endonuclease-reverse transcriptase


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0     1e-15   6.2e-12       1     233 []      15     351 ..      15     351 .. 0.73

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 1e-15
                    EEEEESTG............CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCHECSSSTTSSEEEEEECSTE. CS
                    xxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Exo_endo_phos   1 ltwNvngq............aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllalggflgasstsptgggggggnggavlsrfpl. 83 
                    lt+Nvn              +           +l ++++  daD++ +QE++    s+i+++ +   f+ + s      + +g+ g++ ++r    
     CCD23328.1  15 LTFNVNAIrtffhydpfssmN----------ENLSKVFSYLDADIITFQELKTETSSIIKWGKL-CDFYSFISI---PTTKKGYAGVGCWVRKVEp 96 
                    79*****99999977766444..........449999999999*******99999999987774.333333333...2334444444444443332 PP

                    .....EEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE........................................................... CS
                    .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................... RF
  Exo_endo_phos  84 .....tslfrrtfiefndlvaalrreplaakleqlni........................................................... 115
                         + l ++                                                                                     
     CCD23328.1  97 thplyKVLHVT-------------------------Kaeegitgyltikkqgrngekiryrdlpsndtiggfenitfddesealsldsegrcvmve 167
                    22222222222.........................022222233333333444455566668888888888888899999999999999999999 PP

                    ...............CCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH.................... CS
                    ...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
  Exo_endo_phos 116 ...............ashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapap.................... 176
                                    s++ + +  ++++l++l +++++  + g+ v+++GD N+           +r l ++ ++                    
     CCD23328.1 168 lacnivvisvycpanSSRTLEGELFRMKFLRVLFKRIENLHHLGKEVVLMGDVNV-----------CRDLIDHAEAlevggisiknettgieieae 252
                    999999*************************************************...........666666666678777777777988888888 PP

                    .......................H..........................SSCESCETTTTTTTTTTTEB-BEEEEEECHHHCCEEEEEEECCHHE CS
                    .......................x..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 177 .......................v..........................glyllgggptptyvtraggsrlDrilaspalalfrsgvlppplalv 223
                                                                         ++ +++  +y++ ++gsr+D+il++++l + + +  + p +  
     CCD23328.1 253 yqescrnfilnpdvpyrrllnqmLtdsivpelaqtgflvdttrmkqsrnrLKMYTVWNTLKNYRPVNYGSRVDYILMTSNLGKAVIEADILPSV-- 346
                    8887777777766666666655505555666667777788888999999*****************************9777777777776653.. PP

                    ECTSSCSSSB CS
                    xxxxxxxxxx RF
  Exo_endo_phos 224 rrealtlSDH 233
                          +SDH
     CCD23328.1 347 -----NGSDH 351
                    .....46999 PP

>> zf-GRF  GRF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         2   1.2e+04      12      20 ..     117     125 ..     114     128 .. 0.82
   2 ?    0.5   0.0      0.12   6.9e+02      28      40 ..     352     364 ..     351     368 .. 0.88
   3 !   39.9   0.3   5.6e-14   3.3e-10       1      41 [.     510     555 ..     510     556 .] 0.96

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2
      zf-GRF  12 ltvrktgpN 20 
                 lt +k+g N
  CCD23328.1 117 LTIKKQGRN 125
                 788999998 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.12
      zf-GRF  28 CpkgkekqCgFFk 40 
                 Cp++ + +C F +
  CCD23328.1 352 CPVFTDIDCTFLQ 364
                 ***********77 PP

  == domain 3  score: 39.9 bits;  conditional E-value: 5.6e-14
      zf-GRF   1 plCkcgrlavlltvrktgpNkGRkFYkCpkgke......kqCgFFkW 41 
                 plCk+g+++ l+t+ kt  N+G+ F+ C k+++      ++CgFF+W
  CCD23328.1 510 PLCKHGEESILRTS-KTSSNPGKRFWICKKPRGdlnnpdASCGFFQW 555
                 79************.5****************99999999******* PP

>> Exo_endo_phos_2  Endonuclease-reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00027       1.6       1      41 [.     172     222 ..     172     234 .. 0.76
   2 !    6.5   0.0    0.0012       7.3      77     119 .]     311     355 ..     290     355 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00027
  Exo_endo_phos_2   1 lliisvYippsd.........elenlestlekllselksp..kiiilGDfNa 41 
                      + +isvY+p ++         +  ++++ l k +++l++   +++++GD+N+
       CCD23328.1 172 IVVISVYCPANSsrtlegelfR-MKFLRVLFKRIENLHHLgkEVVLMGDVNV 222
                      579*************999954.4444445555555555558*********7 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0012
  Exo_endo_phos_2  77 sgptfkssngsstiDltltsdnlals..kleleeedlgSDHrpil 119
                      + +++++ n+ s +D +l ++nl +     ++ +   gSDH p++
       CCD23328.1 311 TLKNYRPVNYGSRVDYILMTSNLGKAviEADILPSVNGSDHCPVF 355
                      3378999999*************9999989999999*****9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4045.22
//
Query:       CCD23329.1  [L=597]
Description: hypothetical protein NDAI_0B02940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.7e-219  729.1  47.5   3.1e-219  729.0  47.5    1.0  1  Rft-1     Rft protein
    0.00095   18.9   4.7    0.00095   18.9   4.7    3.7  4  MatE      MatE


Domain annotation for each model (and alignments):
>> Rft-1  Rft protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  729.0  47.5  3.5e-223  3.1e-219       1     509 [.      22     586 ..      22     588 .. 0.99

  Alignments for each domain:
  == domain 1  score: 729.0 bits;  conditional E-value: 3.5e-223
       Rft-1   1 ssakgatflillQlisrlitFllNqllvrflsprilGitvrLelllstiLFlSREairlavlriksk........kkkseslqkvvnlalipvligivl 91 
                 +s+kgatfl+l+Ql+++litF+lN+llvrflspri+Git++Le++++t+LF+SREairl++lri+++        +k+s+ lq++vn+a+ip++ig++l
  CCD23329.1  22 KSTKGATFLMLGQLFTKLITFFLNSLLVRFLSPRIFGITAFLEFIVNTVLFFSREAIRLSTLRITEDhttssvekTKNSQILQTAVNFAYIPFVIGVPL 120
                 79*****************************************************************9999999889999******************* PP

       Rft-1  92 sivlilwqyslsneellqlpyfklsvllvalsiiiellseplyvvaqaelnvklrskleslavlvrclvtfaiivlfekea.................. 172
                 sivl++wqy+++n ++++lp+f++s+ll+++sii+ellsep+++++q++ln+++rs++esla++++c+++f+i+v fek++                  
  CCD23329.1 121 SIVLTTWQYKNINGYFINLPFFQVSILLIWISIIVELLSEPFFIINQFMLNYSSRSRIESLAITMGCITNFIIVVSFEKNWwnpilksmihhnnelmdq 219
                 *************************************************************************************************** PP

       Rft-1 173 .......kegiailaFalgqlaysltllllyyvdflknlkkkkkfslkltkik....lkeekksyyfdkdllelfkkvffqlilKhlLteGdkliisll 260
                        +egiailaFa+g+l++sl+lll+yy+d+l+n++++k+fslkltki     ++++k++yyf++d+le+fkkv+fql++KhlLteGdklii++l
  CCD23329.1 220 eefmevsREGIAILAFAVGKLVHSLILLLCYYWDYLMNFHETKTFSLKLTKIYnenkSTMTKNYYYFQNDILEHFKKVYFQLCFKHLLTEGDKLIINSL 318
                 ****************************************************98988888999999********************************* PP

       Rft-1 261 ctveeQGiYalvsnyGSLvaRlvfaPiEEslrlffakllsskkskknlkesvevLlnllklylylsllivifGpsyssflLqlliGskwsstsvldllr 359
                 ctveeQGiY+l+snyGSLv+Rl+faPiEEslrlf+a+ll s+++ knlk+s++vL+nl+k+y+ylsllivifGp++ssflLq+liGskws+tsvld++r
  CCD23329.1 319 CTVEEQGIYSLLSNYGSLVTRLLFAPIEESLRLFLARLL-SNRTAKNLKLSMQVLINLTKFYFYLSLLIVIFGPVNSSFLLQFLIGSKWSTTSVLDTIR 416
                 ***************************************.*********************************************************** PP

       Rft-1 360 vYclyipllalNGilEaFvqsvassaqllkqsylmvvfSvvfllasyllievlklgaeGlilaNivNmllRiiyslrfikkfykklkle.......... 448
                 vYc+yip+l+lNGi+EaF+qs+a+++q+lk+sy+m+vfS+vfll++++lie+l+l+++Gli++Ni+Nm+lRi+y+++fi +fykkl+ +          
  CCD23329.1 417 VYCFYIPFLSLNGIFEAFFQSTATGDQILKHSYFMMVFSGVFLLNCWILIEFLNLSINGLIYGNIFNMILRITYCSWFIINFYKKLYNSeenistssmk 515
                 **************************************************************************************9999********* PP

       Rft-1 449 ...............kslrellpsalvvalllvsliigyvvelsknllqlligillalllllaillkerellkell 509
                                +++r +++++l+++++++++i g+v    kn++ql+i+i+lal+l+++ill+er++lk ll
  CCD23329.1 516 dstlvkdkgsifvnfRNFRVVIIVGLCISTFNWIMI-GHV----KNFHQLFINIVLALILFITILLQERTILKGLL 586
                 *********************************999.999....9**************************99876 PP

>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2      0.36   3.2e+03     118     133 ..      30      46 ..      11      78 .. 0.50
   2 ?   -2.4   0.0      0.38   3.4e+03      70      91 ..     104     125 ..      97     135 .. 0.62
   3 !   18.9   4.7   1.1e-07   0.00095      62     153 ..     362     453 ..     351     461 .. 0.90
   4 ?   -2.3   1.9      0.34     3e+03      75      99 ..     559     583 ..     535     591 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.36
        MatE 118 lilgipal.alqlvlsg 133
                 l lg+++  ++++ l++
  CCD23329.1  30 LMLGQLFTkLITFFLNS 46 
                 44443332122222222 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.38
        MatE  70 ealrqglilllllsliiallvl 91 
                 ++++   ++ ++++++++++++
  CCD23329.1 104 QTAVNFAYIPFVIGVPLSIVLT 125
                 3444455566666666666654 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 1.1e-07
        MatE  62 aknfkrakealrqglilllllsliiallvllfseqilslftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislisll 153
                 akn k   ++l   +++ + lsl+i++++ ++s ++l+++  ++  +  + + +r+++++ip+l+l+ ++ +++++++    +l  s + ++
  CCD23329.1 362 AKNLKLSMQVLINLTKFYFYLSLLIVIFGPVNSSFLLQFLIGSKWSTTSVLDTIRVYCFYIPFLSLNGIFEAFFQSTATGDQILKHSYFMMV 453
                 677777788888999999***********************************************************999888877777665 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 0.34
        MatE  75 glilllllsliiallvllfseqils 99 
                  l+++++l+li+++ +ll  + il+
  CCD23329.1 559 QLFINIVLALILFITILLQERTILK 583
                 4677788888888887777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4322.48
//
Query:       CCD23330.1  [L=149]
Description: hypothetical protein NDAI_0B02950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-26   92.0   0.0    3.1e-26   91.5   0.0    1.3  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    1.7e-05   25.2   0.2    2.6e-05   24.6   0.0    1.4  2  Histone        Core histone H2A/H2B/H3/H4
     0.0089   16.1   0.0      0.013   15.6   0.0    1.3  1  CENP-T_C       Centromere kinetochore component CENP-T histon
  ------ inclusion threshold ------
      0.017   15.6   0.2      0.078   13.5   0.0    1.9  2  TFIID_20kDa    Transcription initiation factor TFIID subunit 


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.0   6.8e-30   3.1e-26       2      64 ..      38     101 ..      37     102 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 6.8e-30
                    XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklA 64 
                    +LPi++v+++mk++ p+ +k++kdAke+++ecv+efi++++seA+++c  +krKti++e+i++ 
     CCD23330.1  38 WLPINNVARLMKNTlPGSAKVSKDAKECMQECVSEFISFVTSEASDRCANDKRKTINGEDILIS 101
                    8************************************************************875 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   5.8e-09   2.6e-05      65     126 ..      39     100 ..      15     105 .. 0.87
   2 ?   -3.2   0.2       2.2   9.9e+03      23      25 ..     129     131 ..     119     145 .. 0.40

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 5.8e-09
                 HHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHH CS
     Histone  65 lpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiql 126
                 lp++ v r  +++   + ++s++a +++qe +  ++  +++eA+  + + KR+Ti+ +Di +
  CCD23330.1  39 LPINNVARLMKNTLPGSAKVSKDAKECMQECVSEFISFVTSEASDRCANDKRKTINGEDILI 100
                 56666666666667799******************************************976 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.2
                 XXX CS
     Histone  23 akk 25 
                 +++
  CCD23330.1 129 QQQ 131
                 221 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.9e-06     0.013       8      74 ..      39     102 ..      33     134 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.9e-06
    CENP-T_C   8 lPaavvkklakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLm 74 
                 lP   v +l k+       +ak++k+a + ++++  +f++ v+++     +  +RKti+ +D+++ +
  CCD23330.1  39 LPINNVARLMKNT---LPGSAKVSKDAKECMQECVSEFISFVTSEASDRCANDKRKTINGEDILISL 102
                 5555555555444...5689***************************99999**********98765 PP

>> TFIID_20kDa  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.7e-05     0.078      13      62 ..      53     102 ..      42     105 .. 0.87
   2 ?   -0.5   0.0      0.41   1.8e+03      43      54 ..     117     128 ..     113     131 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                  -SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHH CS
  TFIID_20kDa  13 dsetkldedvedlLleiaddFvesvtkfacklakhRksdklevrDiqlhl 62 
                   +++k+ +d ++ + e + +F++ vt+ a+    + k ++++  Di + l
   CCD23330.1  53 PGSAKVSKDAKECMQECVSEFISFVTSEASDRCANDKRKTINGEDILISL 102
                  6788999**************************************98876 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.41
                  HHHHHTT-SEE- CS
  TFIID_20kDa  43 klakhRksdkle 54 
                   lak+R+ + l 
   CCD23330.1 117 YLAKYRQQQALK 128
                  59****988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1244  (0.0693848); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1249.37
//
Query:       CCD23331.1  [L=1159]
Description: hypothetical protein NDAI_0B02960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-67  226.7   0.0    1.4e-66  224.0   0.0    2.5  3  Lon_C           Lon protease (S16) C-terminal proteolytic dom
      5e-37  127.8   3.2    1.8e-36  126.0   3.2    2.0  1  LON_substr_bdg  ATP-dependent protease La (LON) substrate-bin
    2.6e-23   82.9   0.0    9.4e-23   81.1   0.0    2.1  1  AAA             ATPase family associated with various cellula
      4e-07   30.3   0.0    1.9e-06   28.1   0.0    2.2  1  AAA_2           AAA domain (Cdc48 subfamily)
    7.8e-07   29.2   0.0    1.8e-06   28.0   0.0    1.7  1  AAA_5           AAA domain (dynein-related subfamily)
      1e-05   25.4   0.0    2.3e-05   24.2   0.0    1.6  1  ChlI            Subunit ChlI of Mg-chelatase
    0.00019   21.7   0.0     0.0046   17.2   0.0    2.9  1  AAA_22          AAA domain
    0.00067   18.7   0.0     0.0013   17.8   0.0    1.4  1  AAA_PrkA        PrkA AAA domain
      0.002   17.9   0.0       0.01   15.6   0.0    2.2  2  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
     0.0022   18.5   0.8      0.012   16.1   0.0    2.7  2  AAA_18          AAA domain
     0.0023   18.3   0.0       0.09   13.2   0.0    2.7  2  RNA_helicase    RNA helicase
     0.0025   17.6   0.0     0.0052   16.5   0.0    1.5  1  IstB_IS21       IstB-like ATP binding protein
     0.0031   17.9   0.1      0.016   15.6   0.1    2.2  1  AAA_16          AAA ATPase domain
     0.0047   16.9   0.0       0.02   15.0   0.0    2.2  1  AAA_14          AAA domain
  ------ inclusion threshold ------
       0.05   13.5   0.0       0.22   11.4   0.0    2.1  1  RsgA_GTPase     RsgA GTPase
      0.063   13.2   0.6        1.4    8.8   0.1    3.0  3  NTPase_1        NTPase
      0.076   13.0   0.0       0.18   11.8   0.0    1.6  1  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
      0.088   12.9   2.1       0.12   12.5   0.0    2.3  2  SKI             Shikimate kinase
       0.15   11.6   0.3       0.44   10.0   0.0    1.8  2  AAA_7           P-loop containing dynein motor region
       0.15   12.4   3.9         17    5.8   0.0    3.9  4  DNTTIP1_dimer   DNTTIP1 dimerisation domain
        1.8    8.6   6.2       0.25   11.4   0.1    2.7  2  ClpB_D2-small   C-terminal, D2-small domain, of ClpB protein


Domain annotation for each model (and alignments):
>> Lon_C  Lon protease (S16) C-terminal proteolytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.7   2.3e+03     102     140 ..     296     334 ..     276     338 .. 0.82
   2 ?   -3.3   0.0       6.1   5.2e+03     163     198 ..     738     776 ..     735     782 .. 0.78
   3 !  224.0   0.0   1.6e-69   1.4e-66       2     204 ..     909    1116 ..     908    1117 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.7
                 S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE- CS
       Lon_C 102 eGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeit 140
                 +  +P   Ps  v ++  l  ++ +k v++++a    it
  CCD23331.1 296 DLVIPEKHPSPSVPITPKLEDIVVEKIVDNEIAEQPKIT 334
                 557899999999999999999999999999998554444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.1
                 -SBEEEEGGGGGGTT...TS-HHHHTS-B--EESBHHHH CS
       Lon_C 163 ikkvilPkenekdle...diPeevreeleiilveevdev 198
                 + +v+ P++n++ l+   diP ++ + l + +++++d +
  CCD23331.1 738 LLEVLDPEQNNSFLDnylDIPMDLSKVLFVCTANSLDTI 776
                 66899999999866433389***9999999999999987 PP

  == domain 3  score: 224.0 bits;  conditional E-value: 1.6e-69
                  E-TTTTHHHH-S-SS--SSSSS--BSSEEEEEEEETTEEEEEEEEEEEES.....S-S-EEEEES--HHHHHHHHHHHHHHTSS-GGGSS-SS-TTT CS
       Lon_C    2 vtakeleellGkkrfrseeaekedqvGvvtGlawtevGGdlltieavllp.....gkgklkltGklgdvmkesaqaalsyvrsraeelgidkevfek 93  
                  +t ++l++++G +++++++  ++   Gvv+Glawt++GG  l++e+vl +      +  l+ tG+lgdvmkes + a+s+ +   ++   ++ +fe+
  CCD23331.1  909 ITPDNLKDYVGPPIYTTDRLYETTPPGVVMGLAWTSMGGCSLYVESVLEQplhncKHPTLERTGQLGDVMKESSRLAYSFAKMFLAKRYPENRFFEQ 1005
                  7899*****************************************98754332324568************************************** PP

                  -EEEEEE-S-B-GGGGGGGHHHHHHHHHHHHTS--B-TTBEE--EE-TT-BEE--S-HHHHHHHHHHTT-SBEEEEGGGGGGTTTS-HHHHTS-B-- CS
       Lon_C   94 kdihihvPeGavPkdGPsaGvtlatalvslltgkkvrkdvamtGeitLrGrvlpiGGlkekllaakragikkvilPkenekdlediPeevreeleii 190 
                  + ih+h PeGa+PkdGPsaGvt+at+++sl  +++v+  vamtGe+tL+G+vl iGGl+ek +aakr+g k++i+Pk+n +d e++Pe+v+e+le  
  CCD23331.1 1006 ASIHLHCPEGATPKDGPSAGVTMATSFLSLALNRSVEPTVAMTGELTLTGKVLRIGGLREKAVAAKRSGAKTIIFPKDNMSDWEELPENVKEGLEPL 1102
                  ************************************************************************************************* PP

                  EESBHHHHHHHHB- CS
       Lon_C  191 lveevdevlkaalv 204 
                  +++++d+++++++v
  CCD23331.1 1103 AADWYDDIFQKLFV 1116
                  *********98875 PP

>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   3.2   2.1e-39   1.8e-36       2     207 ..     196     498 ..     195     499 .. 0.82

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 2.1e-39
  LON_substr_bdg   2 lpllpldnkvlfPgitlpltvsrpksiaaierlldkdkpyigvflvkesqkdaide.esiselysvGtvarIvqil.....rlddgrikvvlegl 90 
                     + +lp+++++lfPg++  + +s+p++++ai+++l++++py+g f++ + ++++id+ e+ +++++vG++a+I+        + +++++  +l+++
      CCD23331.1 196 MLALPISRRPLFPGFYKAVVISDPNVMKAIKEMLERQQPYLGAFML-KDSESDIDIiENRDQVHPVGVLAQITSAFpskdeKTGKETMTALLYPH 289
                     6789******************************************.7788889********************9976555555677******** PP

  LON_substr_bdg  91 eRvkikkl.eke........................................................................keegylvaeve 112
                     +R+k+++l  +e                                                                        +          
      CCD23331.1 290 KRIKLDDLvIPEkhpspsvpitpkledivvekivdneiaeqpkitgdvvdnadgsqiekqnkekqesvvqkeegeeefesddisE---------- 374
                     *******966657788888888888888888888888877777777777777777777777776666666555555554444440.......... PP

  LON_substr_bdg 113 iiedd...........................s.epedsdslqkelkalvqeiiekikks.....larellkllleielllkyedlenpyrLadl 174
                                                     + e+e +d ++ +++al++ei++ +k++     ++re++  ++  +++ + + +e+p+rLad+
      CCD23331.1 375 ----EelqklqeedlnpteflkaynvslvnvsNlEDEPFDRKSPVINALTSEILKVFKEIsqlntMFREQIATFSASIQSATTNIFEEPARLADF 465
                     ....1444444445666666666666665553368899999999***************4456679***************************** PP

  LON_substr_bdg 175 vaailpfsneekqelLeeldvedRlkkvlelLk 207
                     +aa+ +++++e+q++L  l++e+Rl+k l  Lk
      CCD23331.1 466 AAAVSAGEEDELQDILSSLNIEQRLEKSLLVLK 498
                     ***************************999987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   1.1e-25   9.4e-23       1     127 [.     649     787 ..     649     792 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 1.1e-25
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.........STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk.........yvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLl 90 
                 ++++GppG+GKT++ k++a+ l+++f+++s+  +++          y+g+ + ++ + +k++++++    ++iDEid+++         ++ +  ++Ll
  CCD23331.1 649 ICFVGPPGVGKTSIGKSIARALNRQFFRFSVGGMTDVaeikghrrtYIGALPGRVIQAMKKCQTQN--PLILIDEIDKIGHGG------VHGDPSAALL 739
                 689****************************999966899**********************9998..9**********9888......********** PP

                 HHHHHTTTS............SSTEEEEEEESSGGGSTHHHHSTTSSEE CS
         AAA  91 teldgvkkk............eskvivigatnrpdkldpallrgRfdrk 127
                 ++ld ++++             skv++++++n+ d+++++ll +R++++
  CCD23331.1 740 EVLDPEQNNsfldnyldipmdLSKVLFVCTANSLDTIPRPLL-DRMEVI 787
                 *********************999******************.***986 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   2.2e-09   1.9e-06       6     128 ..     649     771 ..     646     799 .. 0.82

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2.2e-09
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS......EEEEETGGG-------------HHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG......ivllDEidKihpkessgadvSregVqrd 98 
                 i ++gp gvGkt + k++a+ l+ ++  ++ +  +++++e   ++      iga pg v ++ +        +l+DEidKi + +    d S      +
  CCD23331.1 649 ICFVGPPGVGKTSIGKSIARALN-RQFFRFSVGGMTDVAE---IKGHRRTYIGALPGRVIQAMKKcqtqnpLILIDEIDKIGH-GGVHGDPS-----AA 737
                 689********************.8999999999999999...7777778888888877666655677778***********9.55555555.....67 PP

                 HHHHHH....--EE-------EE-TT-EEEEEE- CS
       AAA_2  99 LLqile....ggtltdkqgrkvdtknilfImtga 128
                 LL +l+    ++ l +  + ++d +++lf++t +
  CCD23331.1 738 LLEVLDpeqnNSFLDNYLDIPMDLSKVLFVCTAN 771
                 9999983333455556666999*********998 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.1e-09   1.8e-06       2      78 ..     649     726 ..     648     784 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.1e-09
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------....G-SEEEEESGGG-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar....egeilvlDEverae 78 
                 ++ vGppG+gK+++ +++a+alnr+++       t  +++kg+r++  g     ++ + +a++    +  ++++DE++++ 
  CCD23331.1 649 ICFVGPPGVGKTSIGKSIARALNRQFFRFSVGGMTDVAEIKGHRRTYIG---ALPGRVIQAMKkcqtQNPLILIDEIDKIG 726
                 699******************************************8544...44555555555555888899******974 PP

>> ChlI  Subunit ChlI of Mg-chelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   2.7e-08   2.3e-05      53     121 .]    1016    1084 ..     985    1084 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.7e-08
        ChlI   53 dlkkeGsafDLpiAigilaaleqieaeeetlflGeLsldGslrpvkgvlpialaakkegikkvivpken 121 
                    +k+G++   ++A + l+ + + ++e ++ + GeL l+G++ ++ g+ + a+aak++g k++i pk+n
  CCD23331.1 1016 ATPKDGPSAGVTMATSFLSLALNRSVEPTVAMTGELTLTGKVLRIGGLREKAVAAKRSGAKTIIFPKDN 1084
                  578999999*********************************************************998 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.4e-06    0.0046       5     104 ..     646     726 ..     643     774 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.4e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav.ielliiDEaqh 102
                  +i++ +G++G+GKT   + +++ l         +++++++ + + t+ +++        g+++ +      +l  ++ qa++++++  +l++iDE+++
  CCD23331.1 646 GKIICFVGPPGVGKTSIGKSIARAL---------NRQFFRFSVGGMTDVAEI-------KGHRRTY----IGALPGRVIQAMKKCQTqNPLILIDEIDK 724
                 6899*********************.........999999999999955555.......5543333....5578899**********99*********9 PP

      AAA_22 103 lr 104
                 + 
  CCD23331.1 725 IG 726
                 95 PP

>> AAA_PrkA  PrkA AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.5e-06    0.0013      57     114 ..     615     672 ..     605     684 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.5e-06
    AAA_PrkA  57 pafeedffGleetiekiveyfraaaqrleerkqilyllGPvggGksslverlkkllea 114
                 ++++ed +G++++ ++i+e++      +++  +i+ ++GP g Gk+s+ +++ ++l+ 
  CCD23331.1 615 KILDEDHYGMKDVKDRILEFIAVGKLLGKVDGKIICFVGPPGVGKTSIGKSIARALNR 672
                 56899***********************************************999976 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-05      0.01       7      61 ..     619     674 ..     613     690 .. 0.82
   2 ?   -3.3   0.0       7.7   6.6e+03     127     156 ..     758     787 ..     756     788 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
      RuvB_N   7 eeyigqekvkeklkifieaakkreealdhvl.lyGpPGlGkttlakiiakelgvkl 61 
                 e++ g ++vk+++  fi+  k  ++    ++ ++GpPG+Gkt++ k ia+ l+ ++
  CCD23331.1 619 EDHYGMKDVKDRILEFIAVGKLLGKVDGKIIcFVGPPGVGKTSIGKSIARALNRQF 674
                 5788999999999999999999888776654389*****************99876 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.7
      RuvB_N 127 kldlpkftlvgattragllssPlrdrfgiv 156
                  +dl+k  +v ++    ++  Pl dr+ ++
  CCD23331.1 758 PMDLSKVLFVCTANSLDTIPRPLLDRMEVI 787
                 688999999999999999********9875 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       8.6   7.3e+03      27      88 ..     496     549 ..     484     564 .. 0.59
   2 !   16.1   0.0   1.4e-05     0.012       1      25 [.     649     679 ..     649     731 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 8.6
      AAA_18  27 nlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeles 88 
                 +l++ + + +l     ++   e+k+ ++++  +l+++l+++ +       l id+ + +l++
  CCD23331.1 496 VLKKELMNAELQNKISKD--VETKIQKRQREYYLMEQLKGIKR------ELGIDDGRDKLIE 549
                 455555555555555555..55666666666667777777654......4455555555554 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.4e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf......g 25 
                 I+  G+pGvGKt+++k +++ l+       +
  CCD23331.1 649 ICFVGPPGVGKTSIGKSIARALNRqffrfsV 679
                 899****************998555565551 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.33   2.8e+02      11      77 ..     412     481 ..     411     491 .. 0.80
   2 !   13.2   0.0   0.00011      0.09       1      35 [.     649     695 ..     649     745 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.33
  RNA_helicase  11 KStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdee.nps..dlaelirlv 77 
                   KS +++ L++++lk +k++++ ++++r+   +f  + ++ + +++++ ++  d +   s  ++ el  + 
    CCD23331.1 412 KSPVINALTSEILKVFKEISQLNTMFREQIATFSASIQSATTNIFEEPARLADFAaAVSagEEDELQDIL 481
                   8999*********************************999999999877766554433334555555555 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00011
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl............klkkkdsvy 35 
                   i+++Gp+g+GK+++ k++a+al +++            + k + ++y
    CCD23331.1 649 ICFVGPPGVGKTSIGKSIARALNRQFfrfsvggmtdvaEIKGHRRTY 695
                   799********************988666666666665444445555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.1e-06    0.0052      15     135 ..     613     743 ..     603     749 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.1e-06
   IstB_IS21  15 aqktledidfraarsldkrkvkeLatlsfiekken..ivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrd......gklaralkr 105
                 a+k l d d+   ++++ r+++ +a ++ + k ++  i+++Gp+GvGK+ +  +++++  r+ ++ +   ++d+ +e+k +rr       g++ +a+k+
  CCD23331.1 613 ARKIL-DEDHYGMKDVKDRILEFIAVGKLLGKVDGkiICFVGPPGVGKTSIGKSIARALNRQFFRFSVGGMTDV-AEIKGHRRTyigalpGRVIQAMKK 709
                 44445.55555667999999999999999998664338899*****************9999999888888885.455555543232233666666666 PP

   IstB_IS21 106 llkv.dllilDd...lgllpldqaeaellfevie 135
                 ++    l+++D+   +g   +  + ++ l+ev++
  CCD23331.1 710 CQTQnPLILIDEidkIGHGGVHGDPSAALLEVLD 743
                 6555235555541115777777777777777776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   1.8e-05     0.016      24      56 ..     646     678 ..     639     742 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.8e-05
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggifl 56 
                 + ++ ++G++GvGK+s+ ++++ral+++ + f 
  CCD23331.1 646 GKIICFVGPPGVGKTSIGKSIARALNRQFFRFS 678
                 478999********************9944442 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.3e-05      0.02       2      77 ..     646     745 ..     645     796 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.3e-05
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderd....kkladpe.........kllelileklkeekktylflDEiqev........... 76 
                 +ki++ +G+  vGKT + k +++ l    ++++ +++   +d    k +   +         ++++++++  +  ++ ++++DEi ++           
  CCD23331.1 646 GKIICFVGPPGVGKTSIGKSIARALN---RQFFRFSVGGMTDvaeiKGH---RrtyigalpgRVIQAMKKC-Q-TQNPLILIDEIDKIghggvhgdpsa 736
                 68999*****************9988...99999999888885443222...1223453333444444443.3.5899*******99866666655555 PP

      AAA_14  77 ........p 77 
                         +
  CCD23331.1 737 allevldpE 745
                 555555544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00025      0.22      90     122 ..     637     669 ..     612     680 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
                  HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  90 leelkellkdktsvlvGqSGvGKStLinallpe 122
                  + +l  ++++k++++vG+ GvGK+++ ++++  
   CCD23331.1 637 VGKLLGKVDGKIICFVGPPGVGKTSIGKSIARA 669
                  567888999****************98888765 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.1     9e+02     113     151 ..     220     258 ..     217     269 .. 0.81
   2 ?    8.8   0.1    0.0016       1.4       4      34 ..     651     683 ..     648     695 .. 0.75
   3 ?   -0.5   0.0       1.1   9.8e+02      85     105 ..     703     723 ..     694     727 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.1
                 HHHHHHHHHHTTTSEEEEE--SS--SHHHHHHHT-TT-E CS
    NTPase_1 113 kfkeaveevLksekpvlavihrrkdlalveeirerkdvk 151
                 ++ +a++e+L++++p l+ +  +++++ ++ i++r +v+
  CCD23331.1 220 NVMKAIKEMLERQQPYLGAFMLKDSESDIDIIENRDQVH 258
                 67899*************999998778888888887665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0016
                 EE--TTSSHHHHHHHHHHHH.....GGGEEEEE CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkss..gvkvgGfy 34 
                   GppGvGKt + k ++++l+++   ++vgG+ 
  CCD23331.1 651 FVGPPGVGKTSIGKSIARALNRQffRFSVGGMT 683
                 56******************9985556677764 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHH-EEEE---S CS
    NTPase_1  85 alealrkalseadviviDEiG 105
                 +++a++k ++++ +i+iDEi 
  CCD23331.1 703 VIQAMKKCQTQNPLILIDEID 723
                 5667777777777******95 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00021      0.18       8      44 ..     635     671 ..     629     679 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00021
                 HHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE   8 ealgkklakalgdvilLeGdLGaGKTtlvrglakalg 44 
                  a+gk l+k+ g++i++ G+ G+GKT + +++a+al+
  CCD23331.1 635 IAVGKLLGKVDGKIICFVGPPGVGKTSIGKSIARALN 671
                 6788999996699*********************996 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.8       7.2   6.1e+03      26      49 ..     345     369 ..     339     382 .. 0.75
   2 ?   12.5   0.0   0.00014      0.12       1      21 [.     655     675 ..     655     677 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.2
                 HHHHHHTS-HHHHHH.HHHHHHHHH CS
         SKI  26 liekrtgksiaeife.eegeegFre 49 
                  iek+++ + + +++ eegee+F  
  CCD23331.1 345 QIEKQNKEKQESVVQkEEGEEEFES 369
                 5888888666666662569999965 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00014
                 TTSSHHHHHHHHHHHHTSEEE CS
         SKI   1 mGaGKstvGkllAkklglefi 21 
                 +G+GK+++Gk +A++l+++f+
  CCD23331.1 655 PGVGKTSIGKSIARALNRQFF 675
                 69*****************97 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       3.7   3.2e+03      71      95 ..     503     527 ..     483     542 .. 0.75
   2 ?   10.0   0.0   0.00052      0.44      34      61 ..     647     674 ..     639     688 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.7
       AAA_7  71 aqtsanqlqdiiesklekrrkgvyg 95 
                 +    n++ + +e k++kr+++ y 
  CCD23331.1 503 NAELQNKISKDVETKIQKRQREYYL 527
                 4455678888899999999999885 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00052
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkek 61 
                 k +++vGp G+GKt+i k++ ++l+++ 
  CCD23331.1 647 KIICFVGPPGVGKTSIGKSIARALNRQF 674
                 6789******************999554 PP

>> DNTTIP1_dimer  DNTTIP1 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       3.3   2.8e+03      17      44 ..     432     458 ..     417     481 .. 0.68
   2 ?    4.3   0.8     0.059        50       4      42 ..     500     539 ..     499     570 .. 0.80
   3 ?   -2.3   0.0       6.8   5.8e+03       8      21 ..     562     575 ..     558     577 .. 0.80
   4 ?    5.8   0.0      0.02        17      22      40 ..     843     861 ..     840     884 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 3.3
  DNTTIP1_dimer  17 evdevikkylrkvfkpAveNireNlgee 44 
                     +++++ + + ++f+  ++ +  N+ ee
     CCD23331.1 432 QLNTMFREQI-ATFSASIQSATTNIFEE 458
                    3566777777.77777776666666555 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.059
  DNTTIP1_dimer   4 dLLrkvlQpainkevdevikkylrkvf.kpAveNireNlg 42 
                    +L+ + lQ++i k+v++ i+k  r+++ ++  + i++ lg
     CCD23331.1 500 ELMNAELQNKISKDVETKIQKRQREYYlMEQLKGIKRELG 539
                    689999***********99999988874566666666666 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 6.8
  DNTTIP1_dimer   8 kvlQpainkevdev 21 
                     ++Q+ +++ev ++
     CCD23331.1 562 DNVQKIFDEEVTKL 575
                    57899999999886 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.02
  DNTTIP1_dimer  22 ikkylrkvfkpAveNireN 40 
                    +kky++k++++A+ Ni + 
     CCD23331.1 843 LKKYIEKIYRKAALNIVKQ 861
                    69*************9765 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       4.4   3.8e+03      59      76 ..     313     330 ..     310     334 .. 0.65
   2 ?   11.4   0.1   0.00029      0.25       5      58 ..     796     849 ..     794     867 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 4.4
                    HTHHHHHHHHHTTSSSTT CS
  ClpB_D2-small  59 eiedplaeeilsgelkeg 76 
                    ++ed + e+i+++e++e+
     CCD23331.1 313 KLEDIVVEKIVDNEIAEQ 330
                    677777777777777765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00029
                    HHHHHHHHHHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHH CS
  ClpB_D2-small   5 elkkIvdlalkklekrlke.rgvelevtdealdalaekgydpeyGARpLrriiqr 58 
                    e +kI+++ l   +k+ +  ++ +++++++a+ al++  y +e G R+L+++i++
     CCD23331.1 796 EKVKIAEQYLSPSAKKTAGlQNANVTLSENAVVALMK-YYCRESGVRNLKKYIEK 849
                    56799999999999999888***************98.59*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1576  (0.0879023); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.41
# Mc/sec: 8466.28
//
Query:       CCD23332.1  [L=877]
Description: hypothetical protein NDAI_0B02970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-102  340.2   0.0   5.6e-102  339.6   0.0    1.3  1  MCM              MCM P-loop domain
    2.5e-36  124.3   0.0    4.9e-36  123.4   0.0    1.4  1  MCM_OB           MCM OB domain
    2.7e-26   91.8   0.2    6.8e-26   90.5   0.2    1.7  1  MCM_lid          MCM AAA-lid domain
      2e-23   83.4  34.8      2e-23   83.4  34.8    4.0  5  MCM2_N           Mini-chromosome maintenance protein 2
    2.9e-12   47.1   0.0    8.6e-12   45.6   0.0    1.8  1  MCM_N            MCM N-terminal domain
    2.8e-09   36.7   0.0    2.8e-07   30.1   0.0    2.5  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    1.5e-07   31.5   0.0    3.9e-07   30.2   0.0    1.8  1  AAA_5            AAA domain (dynein-related subfamily)
    0.00029   20.7   0.0     0.0015   18.4   0.0    2.1  2  AAA_3            ATPase family associated with various cellul
     0.0023   17.7   0.1      0.017   14.9   0.1    2.1  1  Sigma54_activat  Sigma-54 interaction domain
  ------ inclusion threshold ------
      0.023   15.1   0.0      0.076   13.4   0.0    2.0  1  AAA              ATPase family associated with various cellul
      0.059   13.1   0.1       0.12   12.1   0.1    1.4  1  AAA_30           AAA domain
        0.1   12.7   0.1        1.9    8.6   0.1    2.3  2  SelR             SelR domain


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.6   0.0  3.7e-105  5.6e-102       2     224 .]     493     715 ..     492     715 .. 0.99

  Alignments for each domain:
  == domain 1  score: 339.6 bits;  conditional E-value: 3.7e-105
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSE CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaa 100
                 ++e++++++++ ii+k+++s+apsiygh+d+k+a++++lfggv k+++ k+++rgdinvll+gdpgtaKsq+Lkyvek+a+rav+++g+g+sa+gLta+
  CCD23332.1 493 EREFRKISRDRGIIDKIISSMAPSIYGHRDIKTAVACSLFGGVPKNVNGKHSIRGDINVLLLGDPGTAKSQILKYVEKTAHRAVFATGQGASAVGLTAS 591
                 6899*********************************************************************************************** PP

                 EEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSS CS
         MCM 101 vvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFD 199
                 v++d+ t+e++le+GalvladkGvc+iDefdkm+++dr+++hEamEqq+isi+KaGiv+tL+ar+s++aAanp++gry+++ ++a+n++l++++LsrFD
  CCD23332.1 592 VRKDPITREWTLEGGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLQARCSIIAAANPNGGRYNSTLPLAQNVSLTEPILSRFD 690
                 *************************************************************************************************** PP

                 EEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 200 lifvllDkvdeekDeelaehivslh 224
                 +++v++D vdee De+la+++v++h
  CCD23332.1 691 ILCVVRDLVDEEADERLATFVVDSH 715
                 **********************987 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.0   3.3e-39   4.9e-36       2     124 ..     318     444 ..     317     446 .. 0.91

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 3.3e-39
                 XGG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEES----S...........B-..TTT-HHH-EEE-GGGSEEEEEEEEEEE------ CS
      MCM_OB   2 lRdlrsehigklvkveGivtrasevkpklkkavfeckkcgktveveleePr...........kCeekeCeskdpfkletekskfvdfqklklQEspeev 89 
                 lR+lr++++ +lv+v+G+vtr++ v+p+lk ++f+c kcg+ ++     P+            C  ++C+sk+pf+++ ek++++++q+++lQE+p++v
  CCD23332.1 318 LRELRESNLTSLVRVTGVVTRRTGVFPQLKYVKFNCLKCGTILG-----PFfqdsneeirisFC--TNCKSKGPFNVNGEKTVYRNYQRITLQEAPGTV 409
                 8***************************************9777.....33333334455558*..89******************************* PP

                 -------EEEEEEEGGGTT---TT-EEEEEEEEEE CS
      MCM_OB  90 paGelPrslevileddlvdkvkPGdrvevtGiyra 124
                 paG+lPr+ evil  dlvd  kPG++vevtGiy++
  CCD23332.1 410 PAGRLPRHREVILLADLVDVSKPGEEVEVTGIYKN 444
                 *********************************86 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.2   4.5e-29   6.8e-26       1      86 [.     766     849 ..     766     850 .. 0.96

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 4.5e-29
                 HHHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHHTSSTSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHHHH CS
     MCM_lid   1 ellrkYiayarekikPklseeakeklseaYvelRkeeedskrksipitvRqLesliRLseAlAklrlsevvteedveeairllkes 86 
                 ell kYi+yar+k++Pkl++++++k+s++Y++lR+e+  s + s+pitvR+Les++R++e++Ak+rlse+v+  d ++ai+++ +s
  CCD23332.1 766 ELLMKYIHYARTKVHPKLHQMDMDKVSRVYADLRRESI-S-TGSFPITVRHLESILRIAESFAKMRLSEFVSSWDLDRAIKVVVDS 849
                 689********************************995.5.89***************************************9887 PP

>> MCM2_N  Mini-chromosome maintenance protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.7      0.57   8.5e+02     112     127 ..       4      18 ..       1      32 [. 0.69
   2 !   83.4  34.8   1.4e-26     2e-23       9     152 ..      65     205 ..      48     206 .. 0.85
   3 ?   -2.9   0.1         5   7.5e+03       8      31 ..     464     487 ..     461     497 .. 0.70
   4 ?   -2.3   0.1       3.3   4.9e+03      57      76 ..     620     639 ..     618     647 .. 0.78
   5 ?    2.5   1.8      0.11   1.6e+02      29      67 ..     710     749 ..     694     765 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.57
      MCM2_N 112 qkrRrRreydededed 127
                 ++rRrR+  +ed+d +
  CCD23332.1   4 NRRRRRED-NEDSDGE 18 
                 55555555.6776654 PP

  == domain 2  score: 83.4 bits;  conditional E-value: 1.4e-26
      MCM2_N   9 eediadldev.aaeeeedgeDLfndnledDyreneeqDrYdlddidDendldeldaaeRraieaeLdrRDrelkaraarrsklaafLqdddded..eld 104
                 +++i+++ +  ++ee+ +  DL+++++ +Dyr+++ +DrYdl+d+dD++   el+a+eRr+i+a+L++RDr l+          a++++dd+e      
  CCD23332.1  65 DNEIDEDPDLeEMEEQMNQVDLVGEDMYEDYRHDASKDRYDLNDVDDTA-QRELSASERRRIDAQLNERDRLLR--------NVAYMDNDDEEPgnTAL 154
                 34555555554557777899***************************95.57789******************6........57999999987788889 PP

      MCM2_N 105 delglpiqkrRrRrey...dedededldeadideleeelsleslaDvkads 152
                 de+glp+q+rRrRr+y   ++ +d+ ld++did+l+eel+lesl+++ka+s
  CCD23332.1 155 DEMGLPVQRRRRRRQYetlEHSDDDLLDDMDIDPLREELTLESLSNIKANS 205
                 ****************6644449999***********************97 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 5
      MCM2_N   8 eeediadldevaaeeeedgeDLfn 31 
                 e + ++ +++  ++e e+g D f+
  CCD23332.1 464 EANSVRRREGNMSNEGEEGLDVFG 487
                 555666667667778899999884 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 3.3
      MCM2_N  57 dldeldaaeRraieaeLdrR 76 
                 ++d+++ ++R  i ++++++
  CCD23332.1 620 EFDKMNDQDRTSIHEAMEQQ 639
                 68899999999999888875 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.11
      MCM2_N  29 LfndnledDyreneeqDrYdl.ddidDendldeldaaeRr 67 
                  + d   +   en++ D+ ++ +  +D+++ +el+a +Rr
  CCD23332.1 710 FVVDSHVRSHPENKDGDDLETtQAGEDDEEAQELSARQRR 749
                 44566666677888889999646699999****9999988 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   5.7e-15   8.6e-12       2     102 ..     221     309 ..     220     314 .. 0.94

  Alignments for each domain:
  == domain 1  score: 45.6 bits;  conditional E-value: 5.7e-15
       MCM_N   2 ekFedFLeefkddsededgekkYrdqlqemaerekttLevdlddLaafdeeLaeailenpkeylplleealkevvkklepsykddakefpaeltrrfqv 100
                 ++ ++FL e+    +de g+++Y ++++++ e+++++Lev++++La+ +  La  + + p+e+l++++ ++ e  + ++p+y++         + +++v
  CCD23332.1 221 RELKSFLLEY----TDETGRSVYGARIRTLGEMNSESLEVNYRHLAESKAILALFLAKCPEEMLKIFDLVAMEATELHYPDYARI--------HSEIHV 307
                 6789******....7899***************************************************************9998........777777 PP

       MCM_N 101 rf 102
                 r+
  CCD23332.1 308 RI 309
                 76 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.027        40      19      42 ..     545     568 ..     540     574 .. 0.85
   2 !   30.1   0.0   1.9e-10   2.8e-07      98     165 ..     604     670 ..     597     703 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.027
  Mg_chelatase  19 aaGgHnlllvGppGsGKtmlakrl 42 
                   + G  n+ll+G pG+ K+ + k +
    CCD23332.1 545 IRGDINVLLLGDPGTAKSQILKYV 568
                   56889*************987765 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 1.9e-10
  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcpcgklk 165
                   + G++ la +Gv ++DE+ +++ +   ++ e +e+++++is+a   ++  ar+ ++aa+Np   g+++
    CCD23332.1 604 EGGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLQARCSIIAAANPNG-GRYN 670
                   67999*******************************************************964.4444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   2.6e-10   3.9e-07       1     128 [.     550     670 ..     550     689 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2.6e-10
                 EEEEE--SSSSHHHHHHHGGGGB.......S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.......nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleer 92 
                 +vlL+G+pGt+Ks++ +++ +         ++    v lt++ +++ ++ ++ +       + ++lv     + ++++DE+++++++   s +  +e++
  CCD23332.1 550 NVLLLGDPGTAKSQILKYVEKTAhravfatGQGASAVGLTASVRKDPITREWTL-------EGGALV--LADKGVCLIDEFDKMNDQDRTSIHEAMEQQ 639
                 69*************999887776667888999999999999999999999996.......889999..88999************************* PP

                 EEE..-SSSEEE---......-EEEEEESS--.-TT CS
       AAA_5  93 rllleeggelvkaknddllerfrviatanpldrsln 128
                  +++ + g ++  ++       ++ia+anp+ ++ n
  CCD23332.1 640 SISISKAGIVTTLQAR-----CSIIAAANPNGGRYN 670
                 ***9999988888775.....9********994444 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.4     2e+03      46      74 ..     441     471 ..     432     476 .. 0.74
   2 !   18.4   0.0     1e-06    0.0015       2     125 ..     551     677 ..     550     680 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.4
       AAA_3  46 vfeeke.kefefkkG.pvfanllladeinra 74 
                 +++++   +++ k+G pvfa ++ a+ + r 
  CCD23332.1 441 IYKNNYdGNLNAKNGfPVFATIIEANSVRRR 471
                 45444337888888889******99999886 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1e-06
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdi..lGtevfeekekefefkkGpvf...anllladeinrappktqsalleameerqvtveg 95 
                 vll g PG+ak ++ k + k    + +r  f++    s +  + +   +  ++e++++ G+++   + + l de ++ + + ++++ eame++ +++++
  CCD23332.1 551 VLLLGDPGTAKSQILKYVEK----TAHRAVFATGQGASAVglTASVRKDPITREWTLEGGALVladKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISK 645
                 78999999999998877655....455655655544444310222333444599******976333359************************999876 PP

       AAA_3  96 e..thklpepflvlatqnPieqeGtyplpeaq 125
                 +   ++l+    ++a+ nP   +   +lp aq
  CCD23332.1 646 AgiVTTLQARCSIIAAANPNGGRYNSTLPLAQ 677
                 522689*************8766666666665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.1e-05     0.017      17     144 ..     543     665 ..     537     672 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
                      HHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHTTTSEEEEETGGGS-HHHH CS
  Sigma54_activat  17 kvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfekadgGtlfLDeigelplelQ 110
                      + ++ d++vl++G+ Gt K+ + + + ++ +   + + a   +a +  l +s    ++k   t   + + G++  ad+G+ ++De  +++ +  
       CCD23332.1 543 HSIRGDINVLLLGDPGTAKSQILKYVEKTAH---RAVFATGQGASAVGLTAS----VRKDPITREWTLEGGALVLADKGVCLIDEFDKMNDQDR 629
                      5567789999999999999998888766555...456677888888999998....89999999999999************************ PP

                      HHHHHHHHHSE..EESBTSSSEEE--EEEEEEESS- CS
  Sigma54_activat 111 ekLlrvlqege..vervGsskeikvdvriiaatned 144
                      + + +++++++  +++ G  ++ ++ + iiaa+n +
       CCD23332.1 630 TSIHEAMEQQSisISKAGIVTTLQARCSIIAAANPN 665
                      *******999722579****************9865 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.1e-05     0.076       1     110 [.     551     663 ..     551     674 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.1e-05
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEE.ETTTCSSSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgveflei.sgsellskyvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgseseeeervvnqLlt 91 
                 vll G pGt K+ + k v k++++ ++ + +g++ +    g +++  ++ +++  + +       ++ + +iDE+d+++ ++ +++  e+++ ++  ++
  CCD23332.1 551 VLLLGDPGTAKSQILKYVEKTAHRAVFATgQGASAV----GLTASVRKDPITREWTLEggalvlaDKGVCLIDEFDKMNDQD-RTSIHEAMEQQSISIS 644
                 79********************97765541666666....444444444444322222234788777***********8888.4444444444444444 PP

                 HHHHTTTSSSTEEEEEEES CS
         AAA  92 eldgvkkkeskvivigatn 110
                 +   v++ ++++ +i+a+n
  CCD23332.1 645 KAGIVTTLQARCSIIAAAN 663
                 4444555577777777776 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.7e-05      0.12      21     119 ..     551     643 ..     543     648 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.7e-05
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEagmvdtkqlaallkaaekagakv 119
                 ++l G +Gt K+ +lk +++++++a    + ++ +g+ A  L+++  ++ + i + ++  +g+  l+++ + ++DE   ++ ++ +++ +a+e++++++
  CCD23332.1 551 VLLLGDPGTAKSQILKYVEKTAHRA----VFATGQGASAVGLTAS--VRKDPITREWTLEGGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISI 643
                 6899*************99988866....5666666677778866..6677777777667777889999****************99999999987766 PP

>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1    0.0012       1.9      80     115 ..     346     380 ..     331     382 .. 0.84
   2 ?    1.1   0.0      0.27     4e+02      52      76 ..     450     474 ..     440     483 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
                 SEEEEEEETTCECEEEEEECTSSSSS.SEEEEE-CC CS
        SelR  80 mertevvcakcdahlGhvFedgpkpttgkrycinsv 115
                 ++ +   c kc++ lG  F+d  ++  +  +c n  
  CCD23332.1 346 LKYVKFNCLKCGTILGPFFQDSNEEI-RISFCTNCK 380
                 5667899****************985.999**9976 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.27
                 E-STTSSSEESS-STTTTEEEEEEE CS
        SelR  52 fdsgcGwpsFaeaikeeavkekkdt 76 
                  +++ G+p Fa+ i++++v++++ +
  CCD23332.1 450 LNAKNGFPVFATIIEANSVRRREGN 474
                 57899**************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 6428.05
//
Query:       CCD23333.1  [L=679]
Description: hypothetical protein NDAI_0B02980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-44  149.5   0.0    4.3e-43  147.3   0.0    1.9  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    0.00047   20.3   0.0      0.001   19.2   0.0    1.5  1  FtsJ             FtsJ-like methyltransferase
  ------ inclusion threshold ------
       0.55   10.7   3.7       0.75   10.3   1.5    2.2  2  Nitr_red_alph_N  Respiratory nitrate reductase alpha N-termin


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.3   0.0   7.3e-47   4.3e-43       2     199 ..     153     403 ..     152     404 .. 0.90

  Alignments for each domain:
  == domain 1  score: 147.3 bits;  conditional E-value: 7.3e-47
                      HHH---TT-EEEESS-TTSHHHHHHHHH..T...TTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC............E CS
  Methyltr_RsmB-F   2 llLapqeeetilDlcaaPGgKTthiael..m...knkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlgg..........elf 80 
                      ++L+ +++ t+lD+caaPG+KT+ + e   m   +++g vvA+d +++R + +++ lkrL+  n++v++ Da+ ++k+  +           +f
       CCD23333.1 153 IVLDVKPHHTVLDMCAAPGSKTAQLIEAlhMdgpEPSGFVVANDSDSKRSHMLVHQLKRLNSANLMVVNHDAQFFPKIQLDsnkgrhnkeyLKF 246
                      789********************9988623333346899**********************************9999988888999*999889* PP

                      EEEEEEE--CCGGGTTT-TCHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-.TTEEEESSBST.TSTT CS
  Methyltr_RsmB-F  81 DriLlDaPCsgtgvirrdpdvklrrkekdiaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkr.edvelvetels.epkg 172
                      DriL D+PCsg g+ir++ ++    + ++   l++ q ++l+  i+llk+gG lvYsTCs+ + Ene+vi + L+k  ++++lv+ + +  + +
       CCD23333.1 247 DRILCDVPCSGDGTIRKNVNIWKDWNTQNSLGLHNVQLNILNRGIQLLKSGGRLVYSTCSLSPIENEAVISATLRKWgNKIKLVDCKEMlPGLI 340
                      *********************7778889999********************************************9636789988754413455 PP

                      SSECEEC....................................TSEEE-TTTTSS-SEEEEEE CS
  Methyltr_RsmB-F 173 lklgeea....................................gtlrllPhtenkdgffiakl 199
                      ++ g  +                                      +r++Ph++n+ gffia l
       CCD23333.1 341 SSPGISKwevydrtmsivskgaekskdtwfqpteeeandfnlsHCIRVFPHQQNTGGFFIAVL 403
                      555665588999******************************8899***************87 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.7e-07     0.001      19     137 ..     157     306 ..     140     334 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.7e-07
                 S-TT-EEEECT-TTSHHHHHHCCT......T.-SEEEEEESSSS.........HHH..TTEEEECS-CCCSSHHHHHCHCHHH.......SSEEEEEE- CS
        FtsJ  19 fkpgktvvDlgaaPGgwsqvllqrl.....gakgkvvavDlqpm.........apl..pgvttiqgditdpetiekikealse.......rkvdlvvsD 94 
                 +kp +tv+D +aaPG+ +  l + l     +++g vva D  +          + l   ++ +++ d +   +i++ ++   +        k+d +++D
  CCD23333.1 157 VKPHHTVLDMCAAPGSKTAQLIEALhmdgpEPSGFVVANDSDSKrshmlvhqlKRLnsANLMVVNHDAQFFPKIQLDSN---KgrhnkeyLKFDRILCD 252
                 4689********************95554322699*****987755555543322223344444666655555554443...1344566678******* PP

                 -S-........SS-CHHHHHHHHHCCCCHHHHCC...HCCCCECCCEEEECCCH CS
        FtsJ  95 gap........dvsgvhdldeylqsqLllaalel...alkllkpggtfvlkifr 137
                 +          +v+  +d  + +++ L   +l++   +++llk gg +v  ++ 
  CCD23333.1 253 VPCsgdgtirkNVNIWKDWNTQNSLGLHNVQLNIlnrGIQLLKSGGRLVYSTCS 306
                 964566666664444444444444444444444433388999999999988777 PP

>> Nitr_red_alph_N  Respiratory nitrate reductase alpha N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.5   0.00012      0.75      15      35 ..      16      36 ..       3      37 .. 0.82
   2 ?   -0.8   0.0      0.38   2.3e+03       7      22 ..     368     382 ..     365     385 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
  Nitr_red_alph_N 15 kfadgHgetteedReWEdaYR 35
                     +   +++e+ +e+ +WE++Y+
       CCD23333.1 16 RSNRNWSELVKENTKWENYYK 36
                     45569***************8 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.38
  Nitr_red_alph_N   7 rffrkkkekfadgHge 22 
                      ++f+++ e+ a+++  
       CCD23333.1 368 TWFQPT-EEEANDFNL 382
                      79****.999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4880.26
//
Query:       CCD23334.1  [L=168]
Description: hypothetical protein NDAI_0B02990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-46  157.9   0.1    1.5e-46  157.5   0.1    1.1  1  UAF_Rrn10  UAF complex subunit Rrn10


Domain annotation for each model (and alignments):
>> UAF_Rrn10  UAF complex subunit Rrn10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5   0.1   8.5e-51   1.5e-46       1     112 [.       1     112 [.       1     122 [. 0.95

  Alignments for each domain:
  == domain 1  score: 157.5 bits;  conditional E-value: 8.5e-51
   UAF_Rrn10   1 mdrnvrealsnlvkefGelvvsadevlaekidfavPiPfktreeldadvekdrnegvfegniiPdldlrvvqdyatelllakykkliealdesslltlG 99 
                 mdrnv+ea+s+lv ef ++ vsade+laeki + vPiPfktr+el+    +d ++g+f+g++iP++dl+vv+++at+l+l +y++li+++dessl+tlG
  CCD23334.1   1 MDRNVFEACSDLVTEFHTHKVSADEILAEKIGNIVPIPFKTRDELQDVSLRDEEDGLFKGDLIPNIDLKVVHYFATQLCLRRYPHLINSFDESSLITLG 99 
                 9********************************************65567999********************************************** PP

   UAF_Rrn10 100 llvekwvkdyltd 112
                 ll+ekwv+dyl  
  CCD23334.1 100 LLIEKWVQDYLVA 112
                 **********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1340.11
//
Query:       CCD23335.1  [L=455]
Description: hypothetical protein NDAI_0B03000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-223  742.6   0.3   1.3e-223  742.2   0.3    1.0  1  GDI            GDP dissociation inhibitor
     0.0027   17.9   0.0     0.0057   16.9   0.0    1.5  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain


Domain annotation for each model (and alignments):
>> GDI  GDP dissociation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  742.2   0.3  1.5e-227  1.3e-223       2     435 ..       7     448 ..       6     449 .. 0.98

  Alignments for each domain:
  == domain 1  score: 742.2 bits;  conditional E-value: 1.5e-227
                 XXEECEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHH-TT....HHHHHHH--GGG--EESS--BEETTSHHHHHHHHTTGG CS
         GDI   2 deeydvivlGtGlkecilsGllsvdgkkvlhldrndyyGgesasltleqlyerfkle....ekpeeklGkdrdwnvdlipkfllanGelvkiliktdvt 96 
                 d eydvivlGtG++ecilsGllsvdgkkvlh+d++d+yGgesas+tl+qly++fk++    e++e k+Gkdrdwnvdlipkfl++nGel++il++tdvt
  CCD23335.1   7 DTEYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGESASVTLSQLYDKFKKSpiskEDREAKFGKDRDWNVDLIPKFLMVNGELTNILVHTDVT 105
                 89*****************************************************9888879999********************************** PP

                 GCS-EEE-SEEEEEETCEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHH-BTTBGGGSTT--TTTSBHHHHHHHCT--HHHHHHHHHHTS--SSSG CS
         GDI  97 rylefkaveGsyvykegkiakvpanelealaspllglfekrrakkfleyvseyeeddpktyedldlkkatmkevykkfdlsedtkdfiGhalalyrddd 195
                 ry++fk+v Gsyv+k+gki+kvpane ea++spl+g+fekrr+kkfle++s+y+ed+ +t+++ldl+k+tm+evy+kf+l ++tk+fiGha+al+++d+
  CCD23335.1 106 RYVDFKQVTGSYVFKQGKIYKVPANEYEAISSPLMGIFEKRRMKKFLEWISSYKEDELNTHQGLDLDKNTMEEVYAKFGLGNSTKEFIGHAMALWTNDE 204
                 *************************************************************************************************** PP

                 GGGSBCHHHHHHHHHHHHHHCCCSS-SEEEETT-TTHHHHHHHHHHHHTT-EEETS--ECEEEE-TT...S-EEEEEETTEEEEECEEEE-GGG-CCCE CS
         GDI 196 ylkqpaletleriklyaeslarygkspylyplyGlGelpqgfarlsaiyGGtymlnkpvdevvlded...gkvvGvkseeevakakkvicdpsylpekv 291
                 yl+q a+ ++eri+ly++s+arygkspylyp+yGlGelpqgfarlsaiyGGtyml++p++ev++d +    k+ Gvk++  ++ a  vi+dp+y+p+k+
  CCD23335.1 205 YLQQIARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIEEVLYDGEaesKKFKGVKTKLGTFTAPLVIADPTYFPDKC 303
                 ****************************************************************965344799************************** PP

                 EEEE.EEEEEEEEESS--TTSTT-SSEEEEE-GGGCTSSS-EEEEEEEGGGTSS-TT-EEEEEEEE--SS-HHHHTHHHHHTT-SECEEEEEEEEEEEE CS
         GDI 292 rkvg.kviraicilshpipntddadsvqiiipqkqlgrksdiyvalvssahnvaakgkylaivsttvetenpevelepalellgpieekfvkisdlyep 389
                 +++g kviraic+l+hpip + d+ds+qiiipq+q++rk+diy+a+vs ahnv++kg+ylai+st+vet++p+vele a++llgpieekf+ i++++ep
  CCD23335.1 304 KSTGqKVIRAICVLNHPIPGAGDSDSLQIIIPQSQVNRKNDIYIAVVSAAHNVCSKGHYLAIISTIVETSQPHVELESAFKLLGPIEEKFMGIAEIFEP 402
                 ****88********************************************************************************************* PP

                 SSSSTTTSEEE-----S-SBSHHHHHHHHHHHHHHHSS-------- CS
         GDI 390 vedgskdnifisksydatshfettvedvkdiykrltGkkldlkeke 435
                  edgskdnif+s+syda+shfe++++dvkdiy r+tG+ l+lk++e
  CCD23335.1 403 KEDGSKDNIFLSRSYDASSHFESMTDDVKDIYFRVTGHPLVLKQRE 448
                 *******************************************986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.4e-07    0.0057       1      41 [.      14      54 ..      14      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.4e-07
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECET CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyevp 41
                   ++G+G++ + +  lL+ +g++vl ++k+d+ GG +as+++ 
     CCD23335.1 14 VLGTGITECILSGLLSVDGKKVLHIDKQDHYGGESASVTLS 54
                   789**********************************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3564.54
//
Query:       CCD23336.1  [L=80]
Description: hypothetical protein NDAI_0B03010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-15   56.8   0.2      2e-15   56.8   0.2    1.0  1  Ribosomal_S15  Ribosomal protein S15


Domain annotation for each model (and alignments):
>> Ribosomal_S15  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.2   1.1e-19     2e-15       4      78 ..       3      75 ..       1      78 [. 0.94

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 1.1e-19
                   HHHHHSSSTT-TSSHHHHHHHHHHHHHHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHHHHHHH-H..HHHHHHHHHC CS
  Ribosomal_S15  4 likefqrhekDtGspevqiallterInnltehlkenkkDkhsrrgLlklvskRrkllkYLkrkdv..erYkkliekl 78
                   ++k+++ ++    +++++++ l+++++++++hl++n+kDk+++ +L++++s++++l +Y+++ +v  +++k+  +++
     CCD23336.1  3 ILKSNGLAP----DIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLILIESRIHRLARYYRTVSVlpPNWKYESATA 75
                   688889999....9***************************************************99****998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 666.88
//
Query:       CCD23337.1  [L=245]
Description: hypothetical protein NDAI_0B03020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-17   62.1   1.2    6.8e-17   61.6   0.3    1.8  2  RPAP2_Rtr1     Rtr1/RPAP2 family
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.23   11.3   0.0    1.4  1  DAHP_snth_FXD  DAHP synthase ferredoxin-like domain


Domain annotation for each model (and alignments):
>> RPAP2_Rtr1  Rtr1/RPAP2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.81   7.2e+03      55      61 ..      34      44 ..      15      48 .. 0.49
   2 !   61.6   0.3   7.6e-21   6.8e-17       2      75 .]      54     128 ..      53     128 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.81
                G....GT-SSH CS
  RPAP2_Rtr1 55 l....ekfCSk 61
                     +++C++
  CCD23337.1 34 IsllcDSYCAD 44
                33334555554 PP

  == domain 2  score: 61.6 bits;  conditional E-value: 7.6e-21
                 G--HHHHHHHHHHHHCTT--SSTT--S--SS-----------.........--TTGGGGT-SSHHHHHHHHHHHHCS- CS
  RPAP2_Rtr1   2 llspsdyddvveERniekkCGyplCnnsleedkrqkekyrisrkakk....vvereelekfCSkaCaerslavraqLs 75 
                 l++p  y ++++ERn++k+CGyplCn+s+e+ +     + i++ +kk     +++++l++fCSk ++++s++++ qLs
  CCD23337.1  54 LITPDIYMNLIDERNLNKRCGYPLCNKSPERLR---DPFSIDEVTKKflweNNPYAYLSRFCSKFHFRCSQFYQLQLS 128
                 7999*************************9988...7777774444411116788999******************96 PP

>> DAHP_snth_FXD  DAHP synthase ferredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.6e-05      0.23       5      32 ..     174     201 ..     173     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.6e-05
  DAHP_snth_FXD   5 mkkgateeqieevierieelGlkvhvsk 32 
                    ++++atee+i+++++ +++lGl+ ++ +
     CCD23337.1 174 LREKATEEDIKSLVAGLKKLGLQGETNE 201
                    6789******************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2033.42
//
Query:       CCD23338.1  [L=531]
Description: hypothetical protein NDAI_0B03030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-80  268.6  21.9    1.4e-79  267.9  21.9    1.3  1  DUF747    Eukaryotic membrane protein family


Domain annotation for each model (and alignments):
>> DUF747  Eukaryotic membrane protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.9  21.9   7.8e-84   1.4e-79       7     316 ..     134     435 ..     129     438 .. 0.92

  Alignments for each domain:
  == domain 1  score: 267.9 bits;  conditional E-value: 7.8e-84
      DUF747   7 adllrlllilisvlllslvDtSrvYHyiRaqsfiKLyvvfnvLEvvdrLlsslgqdildalfstttlerekegeeelskllklvlqfllalayvllHsl 105
                 ++ + ++li +s+++ls+++tS +YH i++qs++KLy++f+vLE++d Ll+s+gq +  +++s+             +k+++  l + l+++y+llH +
  CCD23338.1 134 KERCLVFLIGVSSMFLSKLNTSIIYHRIKRQSAMKLYMLFSVLEMADILLASMGQSLSAVVLSRIG---------YGRKIYQKGLLISLSVIYILLHGY 223
                 556678899999**************************************************9998.........358999****************** PP

      DUF747 106 vlliqvltLnvainSsenaLltllvsnnfvEiKstVFKkfekenlfqivaaDvvERfqllllllivllrnlte...........ssseatslaevlspl 193
                 vl++q+++Lnva+nS++n+Lltll+s +f+EiKs+V Kkf+ke+lfqi++aD+vERf+l+lll+i++lrn+++            +s++  ++ ++ p+
  CCD23338.1 224 VLVYQAVALNVAVNSYSNSLLTLLLSMQFAEIKSAVLKKFDKEGLFQITIADAVERFKLFLLLMIIILRNISAnpiglptswsfKKSSTVLMNFLSGPF 322
                 *********************************************************************************99655555666777889* PP

      DUF747 194 llvlllEvlVDwvKhayllKFNnikpsvyeeyldvllkDvllsrtkqaqaevpckafvafshiltrrlGfmelplvtliirvlpqvlslll.......l 285
                 + v+++E++VDwvKhay++KFN+i+p++y++++ ++++D+++s                  ++ + r+G++  ++v+l+i ++ ++l +++       +
  CCD23338.1 323 ISVIGSEIIVDWVKHAYINKFNRIRPEIYDKFFYITYNDHTTS-----------------LRKFQDRMGLPIPAFVVLFIVMVRPTLFQIFqqsnfplI 404
                 ****************************************998.................234689****************99888888788889988 PP

      DUF747 286 lstlvlalliwlvLlllkvllsllllkfaik 316
                 +++++++++ + +L+++k++l+++l k+ ++
  CCD23338.1 405 TQSIIILIFSFWILVMMKFILHTILEKWGVQ 435
                 888999999999*************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1046  (0.0583412); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3814.24
//
Query:       CCD23339.1  [L=500]
Description: hypothetical protein NDAI_0B03040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.1e-116  387.0   4.7   7.4e-116  386.7   4.7    1.0  1  COX15-CtaA     Cytochrome oxidase assembly protein
  ------ inclusion threshold ------
       0.79   10.2   3.2       0.38   11.2   0.3    2.0  2  DUF3624        Protein of unknown function (DUF3624)


Domain annotation for each model (and alignments):
>> COX15-CtaA  Cytochrome oxidase assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.7   4.7  8.2e-120  7.4e-116       1     323 [.     101     456 ..     101     457 .. 0.96

  Alignments for each domain:
  == domain 1  score: 386.7 bits;  conditional E-value: 8.2e-120
  COX15-CtaA   1 arwlllvlllvllvvvlGgltRltdsGlsitdWppctGalppltdeeweaefekyketpeykkl.agmtlaefkaiawiEwiHRllgrllGllilvpll 98 
                 a+wl++++ lv+++v+lGgltRlt+sGlsit+W+p+ G+lppl++++we+efekyke+pe+k+l ++++l+efk+i+++Ew+HRl+gr++G+++++p++
  CCD23339.1 101 AYWLIGTSGLVFGIVILGGLTRLTESGLSITEWKPVAGTLPPLNQKQWEEEFEKYKESPEFKQLnSHINLDEFKFIFFMEWVHRLWGRAIGAVFILPAA 199
                 58************************************************************************************************* PP

  COX15-CtaA  99 yflakkrisrelkkllllllllvglQGllGwwmVksgLse........kprvspyrlaaHLllaflllalllwlalrllake.......ae....saee 178
                 yf++ +++sr+++k+ll+l++l++lQG+lGwwmVksgL++        kp+vs+yrl++HL++af+l++++lw++ ++l+++       +     ++ +
  CCD23339.1 200 YFAVSGKTSRHVNKRLLGLTGLLALQGFLGWWMVKSGLDQeqlternsKPTVSQYRLTTHLGAAFFLYMGMLWTGFEILRERkwikdpaEAlklfKKLD 298
                 **************************************999**************************************99999998761156788999 PP

  COX15-CtaA 179 eaaakklrllallllallllqialGalvagldAglayntfplmggelipdklplc...........eldwrnlfenpatvqfaHRllAilvllvlllla 266
                   ++  lr + l+ll++ ++++++G++vagldAg +ynt+p+mg++++p++ +l+           +l+wrnl+enp+tvq++HR++A++ ++++l++ 
  CCD23339.1 299 NGSMGPLRKISLGLLFVSFVTAMSGGMVAGLDAGWIYNTWPKMGEQWLPPSRELMddnfarredkkDLWWRNLLENPTTVQLVHRTFAYTSFAAVLAAH 397
                 999***********************************************9**99*******************************************8 PP

  COX15-CtaA 267 illlrkars.pklarlavll.aallllQvalGistvllavplslavaHqlgaallllal 323
                 + +++ ++  pk a++++++ ++++++Qv lGi+t+l+ vp++la++Hq ga++l+++ 
  CCD23339.1 398 MYCIKLKHIiPKNANTTMHAlMGVVTFQVGLGIFTLLWLVPIPLASLHQGGALALVTTS 456
                 888888777999999988888**********************************9975 PP

>> DUF3624  Protein of unknown function (DUF3624)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       1.2   1.1e+04      25      39 ..     219     233 ..     213     235 .. 0.73
   2 ?   11.2   0.3   4.3e-05      0.38      35      72 ..     366     403 ..     363     407 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.2
     DUF3624  25 ltvlsvlswlvWwll 39 
                 + +l++ ++l Ww++
  CCD23339.1 219 TGLLALQGFLGWWMV 233
                 557888888899975 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.3e-05
     DUF3624  35 vWwllfkdtpksvesialllaafafsgLLllHlvvlay 72 
                 +Ww    ++p++v+ +   +a  +f+  L++H+  + +
  CCD23339.1 366 LWWRNLLENPTTVQLVHRTFAYTSFAAVLAAHMYCIKL 403
                 8*******************************976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3647.43
//
Query:       CCD23340.1  [L=358]
Description: hypothetical protein NDAI_0B03050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-09   36.8   0.0    8.7e-09   35.8   0.0    1.5  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
  ------ inclusion threshold ------
       0.18   11.8   2.0        3.6    7.6   0.2    2.4  2  DUF4211   Domain of unknown function (DUF4211)


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   9.7e-13   8.7e-09       2      91 ..     149     284 ..     148     298 .. 0.94

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 9.7e-13
                 HHHHHTTS-HHHHHHHHHHHHHHHS..HCSHHHHH.HSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH............................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................... RF
     HhH-GPD   2 sailsqqtsderanriierlferfg..fptpedla.dadeekLrelirelGfyrrKakyikelArilv............................... 66 
                 s+i+ qq+s  +a++i +++ e f   fpt +dl  d+ +++ r+ i ++G+++rK+ y+ +l   +                                
  CCD23340.1 149 SVIVAQQLSGHAAKSIKKKFIEHFDnkFPTYKDLYhDLKDDDERKQILACGLSQRKMTYLDSLTTYFYeneenirklfdgkdndqeiidelvknikgig 247
                 89*******************************96478899999999**************************************************** PP

                 ............S-SSS--TTSHHHHHHHHHHTTSSS CS
                 ............xxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 ............gkpdvlivvDvhvrrilkrlrsike 91 
                             ++ dv+ + D++++r+++++ s k+
  CCD23340.1 248 pwsakmflitglRRFDVFAAEDLGIARGFSKYLSDKP 284
                 ************8899**************9988776 PP

>> DUF4211  Domain of unknown function (DUF4211)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1    0.0096        86       6      49 ..      72     114 ..      66     122 .. 0.61
   2 ?    7.6   0.2    0.0004       3.6      24      83 ..     128     188 ..     120     197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0096
     DUF4211   6 dedee...lgapdeeeeedelplefsskahkdlkehFkdvvewlvsn 49 
                 d+++e   l+++++     +lp e+ ++   ++ e F +++++++++
  CCD23340.1  72 DTQAEtkvLKVDAK----IDLPSEIPKEFALKHIEEFNKACQYIIKV 114
                 44433222222222....3355555333357999**********974 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0004
     DUF4211  24 plef.sskahkdlkehFkdvvewlvsnaldpdfllafeerkdelylvalkklddeveglad 83 
                 pl + +s+a ++l+++F +   ++v ++l+   +++++++  e++++++ + +d +++l+d
  CCD23340.1 128 PLYLlTSEADNTLQSYFARLASVIVAQQLSGHAAKSIKKKFIEHFDNKFPTYKDLYHDLKD 188
                 55556889999*******************9977777666669999999999998888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       777  (0.0433376); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2731.79
//
Query:       CCD23341.1  [L=598]
Description: hypothetical protein NDAI_0B03060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     9e-160  532.4  39.4   1.1e-159  532.2  39.4    1.0  1  Sugar_tr  Sugar (and other) transporter
    3.2e-26   92.1  33.7    4.2e-26   91.7  25.1    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  532.2  39.4  1.2e-163  1.1e-159       1     452 []      98     559 ..      98     559 .. 0.98

  Alignments for each domain:
  == domain 1  score: 532.2 bits;  conditional E-value: 1.2e-163
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTST.T--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfg.lsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakg 98 
                 ++l++a+gg++ g+dtg+i++f+ +++f+++fg l+++++++  s v++gl+vsi+++G++iG+++++++gd++GR+k+l i+++++++g+++q+ a  
  CCD23341.1  98 LCLCVAFGGFMTGWDTGTISGFVVQTDFIRRFGhLDTAVNTYVLSRVRLGLLVSIVNIGCAIGGIVLSKAGDVYGRRKGLTIVTMVYMVGIIIQISAV- 195
                 69******************************878999999999******************************************************. PP

                 TSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HH CS
    Sugar_tr  99 knsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESPr 196
                  n+++++++gR+++G+g+G++ v++P++isEi+pk +Rg++vs+yql+it+Gi+v++++++g++k++n+++wr++lgl+++++l+ +il+ +++PESPr
  CCD23341.1 196 -NKWYQYFIGRIIAGFGIGGIAVFCPILISEISPKYYRGTCVSFYQLMITAGIFVGYCTNFGTKKYTNSVQWRVPLGLSFAWSLFYMILVlTVVPESPR 293
                 .78********************************************************************************99665553899***** PP

                 HHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHH CS
    Sugar_tr 197 ylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksl 290
                 yl+e+++ ++ake++a+++ ++++d++++ e+d +  ++e+e    +a w+el+s+++ v+qr+++g+++q++qqltG+n+++yy++ if+++gl++s+
  CCD23341.1 294 YLCENNQVQKAKESIARSNRVSPDDPAVQTEMDFIMVSVESEklagNAAWGELFSKRStVFQRVIMGIMIQMLQQLTGNNYFFYYGTIIFKSVGLEDSF 392
                 **************************************99999*************999**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS.......CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTT CS
    Sugar_tr 291 lvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks....kaasivaivfialfialfalgwgpvpwvlvsElfpqsv 383
                 +++ii+gvvnf++tfva+++vdr+GRR +ll+G+++m+ c+vi++  +v+ l++++     k+a+ ++i f++++i+++a++w+p+ wv+vsE fp++v
  CCD23341.1 393 QTSIIIGVVNFASTFVALYTVDRIGRRSMLLWGCLTMISCMVIYSsvGVTRLYPNSAtspsKGAGACMICFTCFYIFCYAISWAPIAWVIVSESFPLRV 491
                 *******************************************************9999**************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 384 Rskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 Rsk++a+a a+nw++ flis+++p+it+ai+ +y+++vf+g+ v+++++vfff+petkg++leei+el+
  CCD23341.1 492 RSKCMALACASNWIWGFLISFFTPFITGAIN-FYYGYVFTGCIVFSFFYVFFFIPETKGLSLEEIQELW 559
                 *******************************.***********************************98 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7  25.1   4.7e-30   4.2e-26       1     351 [.     102     509 ..     102     511 .. 0.80
   2 !    7.6   6.8   0.00017       1.6     104     189 ..     477     564 ..     470     587 .. 0.78

  Alignments for each domain:
  == domain 1  score: 91.7 bits;  conditional E-value: 4.7e-30
       MFS_1   1 lllaaflsalarsilgpalpl.alaedlg..........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslw 86 
                 +++++f+++++ ++++ ++ +    + +g          +s   +gll++++ +g+a++ ++l+  +d +Grr+ l +   ++ +g +++ ++  + ++
  CCD23341.1 102 VAFGGFMTGWDTGTISGFVVQtDFIRRFGhldtavntyvLSRVRLGLLVSIVNIGCAIGGIVLSKAGDVYGRRKGLTIVTMVYMVG-IIIQISavNKWY 199
                 5899***************9988888888888888888899999******************************888888888888.555543335555 PP

       MFS_1  87 lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.........Wravfyilaivsllafvlfllllpeep 176
                   +++r+++G+g g+++  + +li++++pk  rg  ++++++++ +G+ +g+        ++g         Wr++  +  + sl+ ++l+l ++pe+p
  CCD23341.1 200 QYFIGRIIAGFGIGGIAVFCPILISEISPKYYRGTCVSFYQLMITAGIFVGYC-T-----NFGtkkytnsvqWRVPLGLSFAWSLFYMILVLTVVPESP 292
                 ***************************************************43.2.....333333445666******************999999999 PP

       MFS_1 177 perkrkspkeee.........................kgtgpaplvp..........awkallkdpvl.w.....illialllfffgfsglltllplyl 234
                 +    ++++++                          +        +          aw++l++++   +      ++i +l   +g+++++++ +++ 
  CCD23341.1 293 RYLCENNQVQKAkesiarsnrvspddpavqtemdfimV--------SveseklagnaAWGELFSKRSTvFqrvimGIMIQMLQQLTGNNYFFYYGTII- 382
                 99999999999787777777776666666666666652........0444444457789999999944212223367777777777777788888886. PP

       MFS_1 235 qevlgls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt............ssavllllvlvl...iGfglgfv 317
                  +  gl  + ++++++++++ +++    ++a + +dr+grr +ll+++l ++ + +++  ++vt                ++++++ +   + f++++ 
  CCD23341.1 383 FKSVGLEdS-FQTSIIIGVVNFAS---TFVALYTVDRIGRRSMLLWGCLTMISCMVIYSSVGVTrlypnsatspskG---AGACMICFtcfYIFCYAIS 474
                 899999955.88888888888887...999**********************************9999999664322...3333222234344577777 PP

       MFS_1 318 .fpsllalasdlappeeagtasglfntagslggal 351
                   p++++++s+++p + + + ++l+   + + g+l
  CCD23341.1 475 wAPIAWVIVSESFPLRVRSKCMALACASNWIWGFL 509
                 78999**************9999998777777776 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00017
       MFS_1 104 pagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.....k 189
                 p++ +++++ fp + r++ ++l+ a++ +   l   + ++++ ++++ + +++ + + + +f    ++++ ++++    ++++e+      
  CCD23341.1 477 PIAWVIVSESFPLRVRSKCMALACASNWIWGFLISFFTPFITGAINFYYGYVFTGCIVFSFFY---VFFFIPETKGLSLEEIQELweervL 564
                 55668999*****************99999999999999999999999998888888888755...7777777777777776663333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1088  (0.0606838); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 4308.14
//
Query:       CCD23342.1  [L=893]
Description: hypothetical protein NDAI_0B03070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-21   75.8   0.6    2.5e-21   74.9   0.6    1.5  1  Copper-fist  Copper fist DNA binding domain


Domain annotation for each model (and alignments):
>> Copper-fist  Copper fist DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.6   1.4e-25   2.5e-21       1      39 []       2      40 ..       2      40 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 1.4e-25
                 EEETTEEEEETTTTTTSGGGG----SS-EEEE-S----. CS
  Copper-fist  1 ilidgeKyACesCirGHRsstCkHsdrplveirkkGRPv 39
                 +li+g+KyACe+CirGHR++tC+H+d+pl+ i++kGRP+
   CCD23342.1  2 VLINGVKYACERCIRGHRVTTCNHTDQPLMMIKPKGRPS 40
                 69************************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1484  (0.0827709); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 6331.38
//
Query:       CCD23343.1  [L=460]
Description: hypothetical protein NDAI_0B03080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-08   33.4   4.2     0.0043   17.4   0.1    2.8  2  zf-C2H2      Zinc finger, C2H2 type
    1.3e-05   25.6   7.6     0.0043   17.8   0.1    3.1  3  zf-C2H2_4    C2H2-type zinc finger
     0.0019   18.6  10.0     0.0037   17.6   0.3    4.1  4  zf-H2C2_2    Zinc-finger double domain
     0.0024   18.2   1.4       0.44   11.0   0.1    2.7  2  zf-met       Zinc-finger of C2H2 type
      0.006   17.2   1.2      0.042   14.5   0.3    2.7  2  FOXP-CC      FOXP coiled-coil domain
  ------ inclusion threshold ------
      0.023   15.0   0.3        3.9    7.9   0.0    2.6  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
      0.059   13.7   0.9       0.16   12.3   0.9    1.7  1  zf-Di19      Drought induced 19 protein (Di19), zinc-binding
      0.096   13.0   1.7       0.17   12.3   0.6    2.0  2  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
       0.22   11.1   1.1         13    5.5   0.1    2.4  2  zf-tcix      Putative treble-clef, zinc-finger, Zn-binding


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   2.2e-06    0.0043       2      23 .]     389     410 ..     389     410 .. 0.97
   2 !   16.3   1.0   5.1e-06      0.01       1      23 []     416     440 ..     416     440 .. 0.98

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.2e-06
                 EETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                 +Cp+Cgk  +r  +L++H+ +H
  CCD23343.1 389 QCPICGKIVTRVNSLQTHMLIH 410
                 7*******************99 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 5.1e-06
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 ykC+   C k+F+ ksn++rH+++H
  CCD23343.1 416 YKCKwpACEKMFNVKSNMNRHYKIH 440
                 99*********************99 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         9   1.8e+04      16      20 ..     347     351 ..     342     352 .. 0.58
   2 !   17.8   0.1   2.2e-06    0.0043       2      23 ..     389     410 ..     388     411 .. 0.95
   3 !   11.3   0.7   0.00027      0.54       1      23 [.     416     440 ..     416     441 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9
   zf-C2H2_4  16 LlrHl 20 
                 +++H+
  CCD23343.1 347 ISHHM 351
                 46777 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2.2e-06
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                 +CpiCgk  ++ ++L++H++ h
  CCD23343.1 389 QCPICGKIVTRVNSLQTHMLIH 410
                 8*******************99 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00027
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 +kC++  C k F+ k++++rH k h
  CCD23343.1 416 YKCKWpaCEKMFNVKSNMNRHYKIH 440
                 8999999*****99999******99 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.3   2.6e+03       6      15 ..     137     146 ..     137     146 .. 0.84
   2 ?    1.6   0.0      0.22   4.4e+02      16      22 ..     389     395 ..     384     397 .. 0.90
   3 !   17.6   0.3   1.9e-06    0.0037       1      25 [.     402     428 ..     402     428 .. 0.94
   4 ?    2.4   0.4      0.12   2.3e+02       1      13 [.     432     444 ..     432     448 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.3
   zf-H2C2_2   6 irkHtgekpy 15 
                 +++Ht+++ y
  CCD23343.1 137 MKVHTKDTLY 146
                 899**99866 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.22
   zf-H2C2_2  16 eCplCdk 22 
                 +Cp C+k
  CCD23343.1 389 QCPICGK 395
                 8****98 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 1.9e-06
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 +L+ H+  H g +py+C+  +C k F+
  CCD23343.1 402 SLQTHMLIHSGYRPYKCKwpACEKMFN 428
                 5999********************995 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.12
   zf-H2C2_2   1 nLrrHirkHtgek 13 
                 n +rH + H +++
  CCD23343.1 432 NMNRHYKIHLKKN 444
                 689******9875 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00022      0.44       2      20 ..     389     407 ..     388     410 .. 0.94
   2 ?    5.4   0.2     0.013        25       5      21 ..     422     438 ..     421     440 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
      zf-met   2 yCelCnvtfnsesqlksHl 20 
                 +C++C + ++  ++l++H+
  CCD23343.1 389 QCPICGKIVTRVNSLQTHM 407
                 6*****************8 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.013
      zf-met   5 lCnvtfnsesqlksHlq 21 
                 +C ++fn +s+++ H++
  CCD23343.1 422 ACEKMFNVKSNMNRHYK 438
                 7***************8 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.2   2.4e+03      10      26 ..     391     407 ..     388     410 .. 0.88
   2 !   14.5   0.3   2.1e-05     0.042       6      27 ..     417     438 ..     413     454 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.2
     FOXP-CC  10 PgCekvledveeflkhl 26 
                 P C k+++ v++++ h+
  CCD23343.1 391 PICGKIVTRVNSLQTHM 407
                 88999999999999997 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.1e-05
     FOXP-CC   6 vCkWPgCekvledveeflkhln 27 
                  CkWP Cek+++  +++ +h +
  CCD23343.1 417 KCKWPACEKMFNVKSNMNRHYK 438
                 7***********9999999975 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0     0.002       3.9       4      21 ..     390     407 ..     389     408 .. 0.97
   2 ?    4.6   0.2     0.021        41       6      22 ..     422     438 ..     421     438 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.002
                  BTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHl 21 
                  C++C K     n+l++H+
   CCD23343.1 390 CPICGKIVTRVNSLQTHM 407
                  *****************7 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.021
                  TTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   6 lCdKyFksenaldnHlk 22 
                  +C+K+F+  +++  H+k
   CCD23343.1 422 ACEKMFNVKSNMNRHYK 438
                  8******9999999997 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.9   8.1e-05      0.16       4      52 ..     389     440 ..     387     442 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.1e-05
     zf-Di19   4 tCPyCgk.eltvkeLveHvedeHrveskevvCPvCaek..vtkdlvaHltle 52 
                 +CP Cgk    v++L++H+  +      ++  P C+++  v+ ++ +H +++
  CCD23343.1 389 QCPICGKiVTRVNSLQTHMLIHSGYRPYKCKWPACEKMfnVKSNMNRHYKIH 440
                 6******77999*******9955556667777***98755888999998765 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   8.3e-05      0.17      46      96 ..     384     430 ..     348     435 .. 0.70
   2 ?   -0.5   0.3      0.79   1.6e+03      55      87 ..     422     452 ..     409     456 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.3e-05
   zf-C2H2_2  46 kieekleClyCekefkslealreHmkkkgHckineeeeeekkeiekfydfl 96 
                 +i  + +C +C+k  + +++l++Hm  ++  +  +  + ++ ++ek++++ 
  CCD23343.1 384 TIR-RRQCPICGKIVTRVNSLQTHMLIHSGYR--P-YKCKWPACEKMFNVK 430
                 333.59*******************8644333..3.245677777777774 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.79
   zf-C2H2_2  55 yCekefkslealreHmkkkgHckineeeeeekk 87 
                  Cek f+ +++++ H k   H k n  +++++k
  CCD23343.1 422 ACEKMFNVKSNMNRHYKI--HLKKNWGNKKTRK 452
                 588888777778887654..4444444444544 PP

>> zf-tcix  Putative treble-clef, zinc-finger, Zn-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.018        35       9      18 ..     387     395 ..     380     398 .. 0.80
   2 ?    5.5   0.1    0.0064        13      20      40 ..     411     431 ..     409     433 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.018
     zf-tcix   9 GvrkCpkCGt 18 
                 + r+Cp CG 
  CCD23343.1 387 R-RQCPICGK 395
                 4.9******6 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0064
     zf-tcix  20 NGtRglsCkNkaCdqvfkkkd 40 
                  G R   Ck +aC+ +f++k+
  CCD23343.1 411 SGYRPYKCKWPACEKMFNVKS 431
                 5889999***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3488.93
//
Query:       CCD23344.1  [L=187]
Description: hypothetical protein NDAI_0B03090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-08   34.9   0.1    2.1e-07   31.5   0.1    2.6  1  MUG113    Meiotically up-regulated gene 113
      1e-07   32.4   0.1    1.5e-05   25.5   0.1    2.5  1  T5orf172  T5orf172 domain


Domain annotation for each model (and alignments):
>> MUG113  Meiotically up-regulated gene 113
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.1   2.3e-11   2.1e-07       1      73 [.      19     170 ..      19     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 2.3e-11
      MUG113   1 lKIGrTn..nverRlnelnrqcpskltllryyppss............................................................... 34 
                 +KIG+T+  nv  Rl+e++++c++++  l +  +++                                                               
  CCD23344.1  19 VKIGMTTkkNVALRLQEWEKTCQHPVINLSPERVRNllsgreefmnndksdvktltkwmkklslhkkdskkvkisaegpikrqpeilqtykyggffhdg 117
                 5************************99999999999*************************************************************** PP

      MUG113  35 ...pnahrlErllhleLkdkrlrd..ekcdc.........EwFevpaeslkav 73 
                       +++E+ +h+ L ++  ++   + +c         EwF++p ++l  v
  CCD23344.1 118 tghTSLQEIENSIHRLLWKQYGKGlvYCYGCdptgqrrhtEWFNIPIQKLPYV 170
                 **9999*************77777666777799*************9998776 PP

>> T5orf172  T5orf172 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   1.6e-09   1.5e-05      10      94 ..      11     166 ..       3     177 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.6e-09
    T5orf172  10 ssegetillKIGrtsn..vqrRlkelsk.........................................................yptkppselevvae 49 
                 +++  til+KIG+t++  v  Rl+e++k                                                                       
  CCD23344.1  11 WNSPDTILVKIGMTTKknVALRLQEWEKtcqhpvinlspervrnllsgreefmnndksdvktltkwmkklslhkkdskkvkisaeG------------- 96 
                 333447*********99***********9999999999999999999999999999999998888888887666665444444331............. PP

    T5orf172  50 kev....................rkvpnahrvErlihkeLad.rryrvk.cdcgk.....ehrEwFevslee 94 
                                           +  +++E+ ih+ L + +   +  c  +      +h+EwF+++ ++
  CCD23344.1  97 --PikrqpeilqtykyggffhdgTGHTSLQEIENSIHRLLWKqYGKGLVyCYGCDptgqrRHTEWFNIPIQK 166
                 ..03334444555666777777744568999999999999986666654355555899*********98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1412.93
//
Query:       CCD23345.1  [L=262]
Description: hypothetical protein NDAI_0B03100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0002   20.9   0.0    0.00028   20.4   0.0    1.2  1  adh_short     short chain dehydrogenase
  ------ inclusion threshold ------
       0.18   11.3   0.0       0.23   11.0   0.0    1.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.1e-08   0.00028      97     169 ..     119     192 ..      76     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 3.1e-08
                 SHHHHHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGG CS
   adh_short  97 seeewervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelap 169
                 +  + +++  vNl  v+++t+ +l++++  +++ +Ivn+s + +++       Y  sKaa++++++sl  el++
  CCD23345.1 119 KLITLQQCTLVNLILVMKITKFFLKKIVsVKNNFSIVNISHQLTLELPSLANNYMFSKAALNQYVDSLFSELHS 192
                 3334799999****************99788999**********************************999986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.5e-05      0.23      92     158 ..     120     189 ..      78     194 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 2.5e-05
                   HHHHHHHHHHHTHHHHHHHHHHHH...HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHH CS
  adh_short_C2  92 reefdraldvnlyslfllakaalp...lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAve 158
                      +++   vnl  +++++k +l+    +k++ sivn+s        +  n y+ +Kaal++ + +l  e
    CCD23345.1 120 LITLQQCTLVNLILVMKITKFFLKkivSVKNNFSIVNISHQLTLELPSLANNYMFSKAALNQYVDSLFSE 189
                   55567777889999999999999986555677*********9999988999***********99887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2071.68
//
Query:       CCD23346.1  [L=255]
Description: hypothetical protein NDAI_0B03110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-55  187.7   7.8    4.1e-55  187.2   7.8    1.2  1  LUC7      LUC7 N_terminus
  ------ inclusion threshold ------
      0.063   13.9   0.6       0.16   12.6   0.6    1.6  1  PLATZ     PLATZ transcription factor
      0.082   13.7   0.2       0.17   12.7   0.2    1.5  1  FAM24     FAM24 family
        1.8    9.0   3.8        1.8    9.1   1.2    2.4  3  KIF1B     Kinesin protein 1B


Domain annotation for each model (and alignments):
>> LUC7  LUC7 N_terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.2   7.8   9.1e-59   4.1e-55       2     239 ..      11     253 ..      10     255 .] 0.92

  Alignments for each domain:
  == domain 1  score: 187.2 bits;  conditional E-value: 9.1e-59
                 XXXXXXXXXXXXXXXXXXXXXXXXX..........X-EEE--S--SSS-S--SSSS-S-EEEGGGHHHHHHHHHHHHHHHH-XXXXX.XXXXXXXXXXX CS
        LUC7   2 aaralLdeLmGrnrnlapsekkkkv..........nfedpevCksylvkfCphdlfinTkadlGpCkkiHdeelkeeYeearkskkk.lgyeeeflrfl 89 
                 ++r lL++LmGr+ + ++++ +++              dp++Cksylv+ Cp+dlf+ Tk+ lG+C++iH  ++k +Ye+++ +  k   +e+e++  l
  CCD23346.1  11 EQRRLLEQLMGRDSSSSRHRGGSRFhshsnrandmGLYDPKICKSYLVGDCPYDLFQGTKQSLGRCPQIHLAKHKLKYEDEKGKGVKfEAFEREYFMVL 109
                 79**********98877665554444444444555899*******************************************998888899********* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXX CS
        LUC7  90 eklledvdrkiqkgkqrleltqeekeeeeeakakkqeqlkeleekiekllaeaeelgeeGkVdeaqklmkeveelkeekeeleqqyeaaaaneeseasq 188
                 +k+++d++ +i+ + + le+t+eeke+ ++a    +e+l+ l+ +i  +++e++ l    +V +a    +++++++e+++ + ++++a   +e+  +s 
  CCD23346.1 110 SKFINDCNAQINIALKNLEHTSEEKETIRKA----TEELDFLDTRIGLMVQEIQLLVDVNEVMKALIQSTKLQDVQEKRKLVGKKVKAI--TENVGQSA 202
                 ************************9776665....8**************************************************997..889***** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..... CS
        LUC7 189 ekkmkvCeiCGaflivgDaqqRiedHlmGKqHlGyaklrealeelkekrek 239
                 ++k++vCe+CGa+l+  D+++R++dH+ GK+HlGy k+re++e +k+kr +
  CCD23346.1 203 QQKLQVCEVCGAYLSRLDTDRRLADHFLGKIHLGYVKMREHYEYYKKKRYQ 253
                 *********************************************999865 PP

>> PLATZ  PLATZ transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6   3.6e-05      0.16      10      69 ..     154     217 ..     150     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.6e-05
       PLATZ  10 rvadieklldvseiQtYvinsakvvflnerpqarsakakakek..skksss..eaCetCareLq 69 
                  v++i+ l+dv+e+ + +i s+k   ++e+++   +k ka ++   +++++  + Ce+C+  L+
  CCD23346.1 154 MVQEIQLLVDVNEVMKALIQSTKLQDVQEKRKLVGKKVKAITEnvGQSAQQklQVCEVCGAYLS 217
                 699*********************999998776655555554433333333357*****99886 PP

>> FAM24  FAM24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   3.8e-05      0.17       4      53 ..     166     215 ..     164     219 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.8e-05
       FAM24   4 kvskaLkaakepecvaekaknvtqdkviraktittescraLqccdeCsly 53 
                 +v+kaL  + + ++v+ek k v ++  +  + +  +  ++Lq+c+ C+ y
  CCD23346.1 166 EVMKALIQSTKLQDVQEKRKLVGKKVKAITENVGQSAQQKLQVCEVCGAY 215
                 699*****************9666666667788888999********999 PP

>> KIF1B  Kinesin protein 1B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.83   3.7e+03      12      28 ..      25      42 ..      20      50 .. 0.51
   2 ?   -2.9   0.0       2.1   9.5e+03      39      48 ..     179     188 ..     179     188 .. 0.86
   3 ?    9.1   1.2    0.0004       1.8       6      20 ..     238     252 ..     237     255 .] 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.83
       KIF1B 12 Yeeskegesrsh.svdts 28
                +  + +g sr h +++++
  CCD23346.1 25 SSSRHRGGSRFHsHSNRA 42
                555556666666444432 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.1
       KIF1B  39 EsqenhsLiG 48 
                 + qe+ +L+G
  CCD23346.1 179 DVQEKRKLVG 188
                 5699999*99 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0004
       KIF1B   6 vdMRemYeeskeges 20 
                 v+MRe+Ye++k++ +
  CCD23346.1 238 VKMREHYEYYKKKRY 252
                 79*********9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1468  (0.0818785); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1842.42
//
Query:       CCD23347.1  [L=427]
Description: hypothetical protein NDAI_0B03120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-24   84.8   2.4    4.4e-24   84.8   2.4    2.5  2  DUF2418   Protein of unknown function (DUF2418)
  ------ inclusion threshold ------
      0.025   14.7   0.5      0.089   12.9   0.1    2.1  2  SBDS      Shwachman-Bodian-Diamond syndrome (SBDS) protein


Domain annotation for each model (and alignments):
>> DUF2418  Protein of unknown function (DUF2418)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.9     0.083   7.5e+02      30      65 ..     156     191 ..     148     204 .. 0.69
   2 !   84.8   2.4   4.9e-28   4.4e-24       2      96 .]     255     348 ..     254     348 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.083
     DUF2418  30 lvlllsesvlktlllvvllslqlylliskfeqqikD 65 
                 + +l ++  + t++ ++l+ l +yl+ + f++  k 
  CCD23347.1 156 MSILKTADYIITMISSILILLNIYLTYKFFSNHYKS 191
                 333346677777777888888877777777777665 PP

  == domain 2  score: 84.8 bits;  conditional E-value: 4.9e-28
     DUF2418   2 evweLsvWdpskfslrlftlFsPlhvlllvlllsesvlktlllvvllslqlylli.skfeqqikDkkiiqkevleEYnekfVkPrlnvlvrdvavq 96 
                  +++L++W+pskf+++lf++FsP+ +++l++  se+++ +l+ +++ +l l++li +++e +i D+ ii++++++EYn+k+V+P++++ +++v+v+
  CCD23347.1 255 YYFKLKKWHPSKFMVNLFISFSPIGICFLFF--SEVSFLMLIPIAFQQLLLHHLIiEHYELLIVDNLIIASATMNEYNSKIVRPKTSKRIQEVMVD 348
                 5789***************************..******************99999**************************************97 PP

>> SBDS  Shwachman-Bodian-Diamond syndrome (SBDS) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   9.9e-06     0.089       8      51 ..     186     230 ..     179     251 .. 0.85
   2 ?   -2.1   0.1      0.46   4.2e+03       6      17 ..     384     395 ..     381     402 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.9e-06
                 EETTEEEEEEE.-HHHHHHHHCTT---HHHHBSSSS-EEETTTTE CS
        SBDS   8 kkgkkrFeiav.yknklleyregkeidLsevlqsekiFtnaskGe 51 
                  ++ k++ i+  +++ l++ ++ +  +L+e  q++  F+naskG 
  CCD23347.1 186 SNHYKSYSIFNcDPELLQQSKHLTRHPLNELTQNQYYFENASKGS 230
                 445667999977********************************4 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.46
                 EEEETTEEEEEE CS
        SBDS   6 rykkgkkrFeia 17 
                 +y+k+k rFe++
  CCD23347.1 384 KYNKKKGRFEVL 395
                 58899999*997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3216.44
//
Query:       CCD23348.1  [L=425]
Description: hypothetical protein NDAI_0B03130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-41  139.7   7.3      1e-12   47.5   0.0    5.3  5  Prenyltrans      Prenyltransferase and squalene oxidase repea
  ------ inclusion threshold ------
      0.036   13.2   0.0       0.12   11.4   0.0    1.8  2  SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
      0.054   14.0   0.1        0.1   13.1   0.1    1.4  1  FliG_N           FliG N-terminal domain


Domain annotation for each model (and alignments):
>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.2   4.5e-05      0.27      17      44 .]     138     165 ..     131     165 .. 0.93
   2 !   35.0   0.1   1.4e-12   8.6e-09       1      43 [.     174     217 ..     174     218 .. 0.96
   3 !   47.5   0.0   1.8e-16     1e-12       3      44 .]     225     267 ..     223     267 .. 0.94
   4 !   29.6   0.1   7.1e-11   4.2e-07       1      39 [.     272     311 ..     272     316 .. 0.92
   5 !   17.1   0.0   5.7e-07    0.0034       2      42 ..     325     367 ..     324     369 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.5e-05
                  TS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans  17 dGGwggrpgsesdtyytywalaaLallG 44 
                   G +gg  g  +++++ty  ++aLa ++
   CCD23348.1 138 GGPFGGGVGQLAHMAGTYASVNALAVCD 165
                  599**********************985 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 1.4e-12
                  HHHHHHHHHHHHHSHTTS-BBSSTTS.SBBHHHHHHHHHHHHHC CS
  Prenyltrans   1 idvekavefLlscQnedGGwggrpgs.esdtyytywalaaLall 43 
                  id++ + ++Ll   ++dGG+  + ++ e+dt++ y+al+ ++ll
   CCD23348.1 174 IDRQALYDWLLALKQPDGGFKTCLEVgEADTRGVYCALTLASLL 217
                  799************************************99998 PP

  == domain 3  score: 47.5 bits;  conditional E-value: 1.8e-16
                  HHHHHHHHHHHSHTTS-BBSSTTS.SBBHHHHHHHHHHHHHCT CS
  Prenyltrans   3 vekavefLlscQnedGGwggrpgs.esdtyytywalaaLallG 44 
                  +e  ve+L +cQn++GG+gg+p   e++++yt++a+a+La+l+
   CCD23348.1 225 REGTVEYLVKCQNYEGGFGGSPQEdEAHGGYTFCAVASLAILN 267
                  67789*****************999****************95 PP

  == domain 4  score: 29.6 bits;  conditional E-value: 7.1e-11
                  HHHHHHHHHHHHHSH.TTS-BBSSTTSSBBHHHHHHHHHH CS
  Prenyltrans   1 idvekavefLlscQn.edGGwggrpgsesdtyytywalaa 39 
                  i+ ek+ e+   +Q  e+GG++gr ++ +d++y++w+ a+
   CCD23348.1 272 INLEKLMEWCSLRQTnEEGGLAGRSNKLVDGCYSFWVGAT 311
                  6889********************************9886 PP

  == domain 5  score: 17.1 bits;  conditional E-value: 5.7e-07
                  HHHHHHHHHHHHSH..TTS-BBSSTTSSBBHHHHHHHHHHHHH CS
  Prenyltrans   2 dvekavefLlscQn..edGGwggrpgsesdtyytywalaaLal 42 
                  d++ +++++l c++   + G+++ pg++sd+y+t++ l +L +
   CCD23348.1 325 DKKVLRDYILICCQssHEPGLRDKPGKHSDFYHTMYILFGLVI 367
                  777799****************************998877765 PP

>> SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     2e-05      0.12       5      68 ..     180     246 ..     177     260 .. 0.85
   2 ?   -2.0   0.0      0.25   1.5e+03     223     251 ..     265     294 ..     254     300 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2e-05
  SQHop_cyclase_N   5 aeallslqkpdGhWvgeLe...anvtitaeyillreflgeddeeeeekiakylrsqqredGgWelyp 68 
                       ++ll+l++pdG ++++Le   a++     ++ l  +l++ ++e++e +++yl + q+ +Gg++  p
       CCD23348.1 180 YDWLLALKQPDGGFKTCLEvgeADTRGVYCALTLASLLNILTDELREGTVEYLVKCQNYEGGFGGSP 246
                      689***************73335666666778888899************************98655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.25
  SQHop_cyclase_N 223 plkplrkrAlrkaeewilerqea.sgglgg 251
                      +l++l k  l+k +ew+  rq + +ggl+g
       CCD23348.1 265 ILNSLDKINLEKLMEWCSLRQTNeEGGLAG 294
                      566777888999999998887651566665 PP

>> FliG_N  FliG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   1.8e-05       0.1      27      85 ..      27      84 ..      15      90 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
                SXHHHHHHHHHHHHCHTTXXHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHSH CS
      FliG_N 27 LdeeeiekltkeiaslksvskeeveaVleefleeleaqeylseggeeyarelLekalge 85
                 +eeeie l+ke+ +  ++s++ev++ ++e  e++ ++e+++ +  ++ r+ L  a+g+
  CCD23348.1 27 VSEEEIEPLMKELETDTTISRDEVKHTCQELFEKVINKEEVVLD-RKFHRRYLDLAFGS 84
                689*********************************99999988.77888899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      672  (0.0374812); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 3321.27
//
Query:       CCD23349.1  [L=439]
Description: hypothetical protein NDAI_0B03140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-09   38.0   0.0    4.1e-09   36.5   0.0    1.8  1  UBX       UBX domain
  ------ inclusion threshold ------
       0.14   12.4   3.8       0.23   11.8   3.8    1.3  1  CDT1      DNA replication factor CDT1 like


Domain annotation for each model (and alignments):
>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   4.5e-13   4.1e-09       5      80 ..     342     434 ..     339     435 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 4.5e-13
                 SEEEEEEEETTSTEEEEEEESSSBHHHHHHHHHHHCCCCCTS...................EEEEETTTTEEGGCCCCSBCCCC.TTTSCEEEEEE CS
         UBX   5 datrlqiRlpdGsrlvrrFkksdtlesvyeyVdsklfekeep...................FqLltsfPrreltksdkktLsdl.gllpnstlvle 80 
                 + +r+++R+ dG+r vr+F++s ++e++y+y ++   + +e                    F+L+   Pr+el++s+   +s+   ++p++++v+e
  CCD23349.1 342 NSSRIALRV-DGNRVVRKFDSSLPIEEIYAYAELYSKGLLEAdaeydshdeypsgydheytFKLVCLAPRKELDPST--IISEEpLIYPSGNVVIE 434
                 678999997.9********************998888888778899******************************6..9***99*********98 PP

>> CDT1  DNA replication factor CDT1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.8   2.5e-05      0.23      40     121 ..     244     330 ..     228     335 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.5e-05
        CDT1  40 rmsrksfeekhLaqikt.vyPeayklkqekqlkef.gssgkakaskyelviePnleddl......kvsaseaetdkrkklsaerlleRrk 121
                 ++++++++++ L+ i+t  yP+ ++++q++q++++ +  +++++++y+  ++    d++      +++++e++ ++r+  + ++ll R+ 
  CCD23349.1 244 SLIECDYSSQSLENILTkAYPKLVNIRQQRQNQAMeSLIREQQDARYQTSLNR---DQErerrrvQAREREQMERHREIQERQWLLWRKA 330
                 56778999999*9998658****************777778888899999984...2222335554555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1241  (0.0692175); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3324.79
//
Query:       CCD23350.1  [L=144]
Description: hypothetical protein NDAI_0B03150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      7e-25   87.2   0.1    1.2e-24   86.5   0.1    1.4  1  SRP14       Signal recognition particle 14kD protein
  ------ inclusion threshold ------
       0.03   14.8   1.0      0.034   14.6   0.2    1.5  2  ParB        ParB family
       0.11   12.7   0.0       0.16   12.2   0.0    1.3  1  LigT_PEase  LigT like Phosphoesterase


Domain annotation for each model (and alignments):
>> SRP14  Signal recognition particle 14kD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.1     2e-28   1.2e-24       1      96 []       8     123 ..       8     123 .. 0.95

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 2e-28
       SRP14   1 lsndeFlteLtelfeksrekgkgsVyltqKrlt.....................eakkaeskeeeesseekeykcLiRatdgkkkkkvkisTvVeakdl 78 
                 ls+++Fl +++e+f+ ++ek+  +V lt+Krl+                     ++k++    + ++ ++key++LiR+++g++ kk+k+sT++++++l
  CCD23350.1   8 LSSETFLVKVSEFFKIANEKK-ITVHLTLKRLIdrdpveenpeldstkqpffdvSQKATGVVPAGKEISTKEYPLLIRISYGSHAKKTKCSTIINSDQL 105
                 799***************999.5********99********************96677888888999999***************************** PP

       SRP14  79 ekFqarYaevlkagmdgL 96 
                 +kF+++Y +v+k++m+gL
  CCD23350.1 106 DKFWQDYTSVVKSSMNGL 123
                 ****************98 PP

>> ParB  ParB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.2   7.3e+03      23      32 ..      22      31 ..      12      55 .. 0.51
   2 ?   14.6   0.2   5.6e-06     0.034       2      79 ..      69     141 ..      68     144 .] 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
        ParB 23 ekkdvelsel 32
                + ++++  ++
  CCD23350.1 22 KIANEKKITV 31
                3333333333 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 5.6e-06
        ParB   2 PvaseLtlaDYklLlkvaeklekkdvelseliekvkeeiekvqsdtelaedeqkseilklikkeskrlkkpkkkdkav 79 
                 P   e++ + Y lL  ++   ++k+++ s++i++   +++k     +++ +++ks++ +likk++k+ k++ +kdk++
  CCD23350.1  69 PAGKEISTKEYPLLIRISYGSHAKKTKCSTIINS--DQLDKF---WQDYTSVVKSSMNGLIKKKKKKGKSAGTKDKKK 141
                 77789**************************995..667774...6677789**********************9975 PP

>> LigT_PEase  LigT like Phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.7e-05      0.16      30      52 ..      26      52 ..      15      76 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
                TSGGGSEEEEEEEEEES....HHHHHH CS
  LigT_PEase 30 vrpfnpHiTLaflgevd....eekvpe 52
                +++ ++H+TL++l + d    +++++ 
  CCD23350.1 26 EKKITVHLTLKRLIDRDpveeNPELDS 52
                5999*********99996544444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1069.08
//
Query:       CCD23351.1  [L=1047]
Description: hypothetical protein NDAI_0B03160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-71  238.5  24.6    1.2e-70  237.9  24.6    1.3  1  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
      2e-49  167.9   7.1      2e-49  167.9   7.1    2.4  2  PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltra
    4.7e-36  124.4   1.1    4.7e-36  124.4   1.1    1.7  2  MIR       MIR domain
    2.4e-05   24.6  16.8    2.4e-05   24.6  16.8    2.0  2  PMT_2     Dolichyl-phosphate-mannose-protein mannosyltransfer
  ------ inclusion threshold ------
       0.16   12.0   3.5       0.27   11.2   3.5    1.2  1  DUF1223   Protein of unknown function (DUF1223)


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.9  24.6   3.4e-74   1.2e-70       3     244 ..      60     300 ..      58     301 .. 0.97

  Alignments for each domain:
  == domain 1  score: 237.9 bits;  conditional E-value: 3.4e-74
         PMT   3 ltllallirlwrlslpnsvvfdevhfgkfasdYlehsffmdvhpplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsallgslivplvy 101
                 l +++++irl+ ls+pnsvvfdev +g fas+Yl+++ff+dv ppl+k+l+a  gyL+g++g+f+f +iga  +++ +pyv +R +sallgs++v+++y
  CCD23351.1  60 LWIFTSIIRLHDLSWPNSVVFDEVVYGGFASKYLKGTFFLDVNPPLVKLLYAAIGYLSGFKGSFDFGRIGAA-FSAATPYVLMRSLSALLGSFTVVVLY 157
                 56899****************************************************************955.5555********************** PP

         PMT 102 ltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkferkapfsrswwlwllltgvalglavsvKwvglftvllvgllliwel 200
                 ltl+ +g++ ++al +a+++++ens++t sr+i+ldspL+ff++l++y++ k e+++ +s + ++ ++l  ++lg+a+s+Kwv++ ++++vgl+++++l
  CCD23351.1 158 LTLRVSGVRIWVALATAICLAVENSYVTVSRFIMLDSPLVFFIALAVYFVQKSELYQAGSIKSYFLVFLSSISLGFAISSKWVAVGAFAWVGLMCLFRL 256
                 *************************************************************************************************** PP

         PMT 201 wqllgdkslllksivkhllaralaliviPvtlylavftvhfwll 244
                 w++ gd+ ++  s++k++++++ +l+v+P+++y++vf++hf+l 
  CCD23351.1 257 WFMVGDLNRSVCSSFKIAAIKIATLLVVPFCMYVFVFYLHFQLA 300
                 *****************************************986 PP

>> PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   5.1       2.3   8.4e+03     154     183 ..     266     301 ..     164     314 .. 0.72
   2 !  167.9   7.1   5.5e-53     2e-49       1     199 []     536     730 ..     536     730 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2.3
    PMT_4TMC 154 k......klvklivvvvllvlviavFiffspltyGl 183
                 +       ++ +i++++++ ++++vF+f++ + +++
  CCD23351.1 266 SvcssfkIAAIKIATLLVVPFCMYVFVFYLHFQLAN 301
                 123334223344555555557777888777766655 PP

  == domain 2  score: 167.9 bits;  conditional E-value: 5.5e-53
    PMT_4TMC   1 FlkkflelqkamltsnnalteshpyaSepyeWplllrgisywtkneekkqiyllGNpvlwwlstiallvfvllllalllrrqrgvkdleeeetr..lln 97 
                 Fl+kf+e +k++l++  ++ + hpy+S+p++Wpl+ rgi +w++ ++   iyllGN v+ww+ t+++++f++  +++llr+q g++   ++  +  ++ 
  CCD23351.1 536 FLDKFIETHKKILHVSGKIDNTHPYESSPFSWPLMPRGIDFWNEGHQ--DIYLLGNAVVWWSVTAFIALFLGNSALQLLRWQLGYELS-QDPVVinFHL 631
                 99*****************999********************99987..9************************************99.5555569*** PP

    PMT_4TMC  98 sglflllgwalhylPfflmgRvlflhhYlpAllfailllaalldfllkslkkslkkkklvklivvvvllvlviavFiffspltyGlpgtseevkklkwl 196
                 +++ +llg++l+++P +l + +lfl  YlpA++f il+l++ l++++++  +++   k+ +++++vv++++++ +F   s l+yG+++t++ +++ k+l
  CCD23351.1 632 QVIQYLLGFILNFAPSLLFKGQLFLNNYLPAYYFGILALGHGLEMIVSYFFERR---KSSGYVLIVVFVFMAVRFFSGHSSLVYGTRWTTDLCEQSKLL 727
                 ***********************************************8888777...678*************************************** PP

    PMT_4TMC 197 ssW 199
                 s W
  CCD23351.1 728 SDW 730
                 **9 PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.4   1.1   1.3e-39   4.7e-36       2     179 ..     348     507 ..     347     513 .. 0.96
   2 ?   -3.9   1.1       2.9     1e+04     160     183 ..     843     866 ..     838     878 .. 0.67

  Alignments for each domain:
  == domain 1  score: 124.4 bits;  conditional E-value: 1.3e-39
         MIR   2 yLkggdvvRLfHshqdeyltiseqqqkqevflritlypsadaanssraLWeievvqkd...awrgglikwgkvyRlkHlaTgryLaseeekksplsese 97 
                 yL         Hsh++ y t+s+qqq       i lyp +d +n+    W +e++ k+    ++ ++++ g++++l H +T ++ + +++ k+p+se++
  CCD23351.1 348 YL---------HSHSHYYETGSNQQQ-------ISLYPYEDGNNE----WLVELYDKPlanVTEWKNLTSGMKIKLLH-NTFCRVHTHDH-KPPVSENS 424
                 55.........***************.......************....********988777999************.799********.******** PP

         MIR  98 ddqkevsayglegfegd.nDk..veifekksttgmksaklvprdsyvrlqHvvtgcwLhstsvklkkekfekvqqkvicakeked 179
                 d+qkevs+yg+e+fegd nD+  +ei+e +s +g++++++++ ++++rl+H+  gc+L+s+++kl+k++f+  qq+v+c  +++d
  CCD23351.1 425 DWQKEVSCYGFENFEGDgNDDwiIEIDEDESVPGEAQQHIRALETKFRLKHAIMGCYLFSHETKLDKKGFN--QQEVTCGYSGKD 507
                 ******************9999*************************************************..******999887 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.9
         MIR 160 kkekfekvqqkvicakekedkeal 183
                 +++ ++++q+ v  +++++++e+l
  CCD23351.1 843 QENAQKNIQENVQEHQQEHQQETL 866
                 444444447777777777777765 PP

>> PMT_2  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6  16.8   6.6e-09   2.4e-05      24     158 ..     141     288 ..     102     289 .. 0.83
   2 ?   -3.0   0.6       2.1   7.4e+03      72      93 ..     656     677 ..     629     705 .. 0.42

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 6.6e-09
       PMT_2  24 irlvsalagvltilllyllarrlfg.kraallaalllavvplfvalsalftpdaplvllwalalylllr..aleknklkyw...llagvlfGlgflsKy 116
                 +r +sal+g+ t+++lyl++r +    ++al++a++lav   +v++s+ + +d+plv+++ala+y++ +  + + +++k +   +l+ +++G+++ sK 
  CCD23351.1 141 MRSLSALLGSFTVVVLYLTLRVSGVrIWVALATAICLAVENSYVTVSRFIMLDSPLVFFIALAVYFVQKseLYQAGSIKSYflvFLSSISLGFAISSKW 239
                 6889*****************9865699**************************************9762267899999996666778999*******8 PP

       PMT_2 117 taa..llliaall......yllisarrilkekkpylalllalllfspvli 158
                  a+  +  ++ l+      +++ + +r + ++ +++a+ +a ll++p+ +
  CCD23351.1 240 VAVgaFAWVG-LMclfrlwFMVGDLNRSVCSSFKIAAIKIATLLVVPFCM 288
                 7642222222.223434434444477888888888999999999999876 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.1
       PMT_2  72 ftpdaplvllwalalylllral 93 
                 ++++ p + + +lal   l+++
  CCD23351.1 656 LNNYLPAYYFGILALGHGLEMI 677
                 3444444444444443322222 PP

>> DUF1223  Protein of unknown function (DUF1223)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.5   7.6e-05      0.27      76     141 ..     823     887 ..     821     924 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.6e-05
                 EETTTEEEETT-HHHHHHHHHHHHHTT-S--S-EEEEE-SS.SEEEEE---S.....S-EEEEEEEE CS
     DUF1223  76 vvnGreevvgsdeeeleaaisaaaaaaaaakvkvklsregdetlevsveaaaas.eekeadvllvlv 141
                 vvnG+ + +g+ +e++e+ i++ a+++ +++v+ + +++++etl+ +v++++++ +e   + + v +
  CCD23351.1 823 VVNGQVKGEGEGQENIEENIQENAQKNIQENVQEHQQEHQQETLQGDVQENEEPvKE--EEAQSVSF 887
                 9************************999*********9***********99976533..33333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1047 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1870  (0.1043); expected 358.6 (0.02)
Passed bias filter:                      869  (0.048469); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.43
# Mc/sec: 7372.76
//
Query:       CCD23352.1  [L=864]
Description: hypothetical protein NDAI_0B03170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-85  284.4  17.7    7.3e-85  284.4  17.7    2.0  2  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
    1.7e-60  204.0  19.0    1.7e-60  204.0  19.0    1.8  2  PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltra
    7.4e-47  159.6   0.1    1.2e-46  158.9   0.1    1.3  1  MIR       MIR domain


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.4  17.7   1.2e-88   7.3e-85       3     244 ..      67     307 ..      65     308 .. 0.98
   2 ?   -3.4   3.0      0.94   5.6e+03     108     155 ..     605     651 ..     592     710 .. 0.59

  Alignments for each domain:
  == domain 1  score: 284.4 bits;  conditional E-value: 1.2e-88
         PMT   3 ltllallirlwrlslpnsvvfdevhfgkfasdYlehsffmdvhpplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsallgslivplvy 101
                 l ++++ irl rls+pnsvvfdevhfgkfas+Y++++ffmdvhppl+kml+a++++Lag++g+f f +ig   yp+ vpyv +R fsa lgs +v+l+y
  CCD23352.1  67 LIVFTASIRLPRLSQPNSVVFDEVHFGKFASYYIKGEFFMDVHPPLAKMLYAGVAALAGFKGDFLFPEIG-ALYPKDVPYVVMRTFSAALGSCTVILLY 164
                 7799999**************************************************************8.899999********************** PP

         PMT 102 ltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkferkapfsrswwlwllltgvalglavsvKwvglftvllvgllliwel 200
                 ltl+ +g++ ++a ++ l++++ens++t+sryilldspL+ff+++s y + k+e +  fs +  ++l++tg++lg+a s+Kwvglft++++gll+iw+l
  CCD23352.1 165 LTLRASGVRSWIAFVCGLCFAIENSYVTISRYILLDSPLIFFIAASAYAFKKYETYHSFSIGSLKTLIATGLCLGMAASSKWVGLFTIAWIGLLCIWRL 263
                 ******************************************************9999***************************************** PP

         PMT 201 wqllgdkslllksivkhllaralaliviPvtlylavftvhfwll 244
                 w++ gd+s + ks ++++++++++l++iP  lyl++f vhf+ l
  CCD23352.1 264 WFMVGDLSKSVKSVFMIAIMKLVCLLGIPTILYLLFFQVHFQSL 307
                 *****************************************976 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.94
         PMT 108 gfskltallaallvllenslitlsryilldspLlfftllsmyclvkfe 155
                  +s ++++ +a+ vl e +    ++ il ds  + f +  + +l+ f 
  CCD23352.1 605 SVSAFIVV-FAIVVLYELISWQVGKSILQDSNVVNFHVQVIHYLLGFA 651
                 44433332.233344455555555555555555555544444444443 PP

>> PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   1.5         1     6e+03      60      60 ..     240     240 ..     169     303 .. 0.57
   2 !  204.0  19.0   2.9e-64   1.7e-60       1     199 []     544     740 ..     544     740 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1
    PMT_4TMC  60 w 60 
                 +
  CCD23352.1 240 M 240
                 0 PP

  == domain 2  score: 204.0 bits;  conditional E-value: 2.9e-64
    PMT_4TMC   1 FlkkflelqkamltsnnalteshpyaSepyeWplllrgisywtkneekkqiyllGNpvlwwlstiallvfvllllalllrrqrgvkdleeeetr.llns 98 
                 Fl+kf+e++++m+++n++l+e+h ++S p +Wpll rgisyw++++++k++yllGN ++ww+ +++++vf++++l++l+++q g ++l++++ + ++ +
  CCD23352.1 544 FLQKFIESHQKMWHINSNLVEPHYFESLPTSWPLLSRGISYWGDDTHHKTVYLLGNAIVWWSVSAFIVVFAIVVLYELISWQVGKSILQDSNVVnFHVQ 642
                 9***************************************************************************************6666559**** PP

    PMT_4TMC  99 glflllgwalhylPfflmgRvlflhhYlpAllfailllaalldfllkslkkslkkkklvklivvvvllvlviavFiffspltyGlpgtseevkklkwls 197
                 ++ +llg+a+h++P flm+R++flhhYlpA++f +l+l++ ld++++++ k++   k++++i+++v++++++++F     ++yG ++t+e++k+ +w+s
  CCD23352.1 643 VIHYLLGFAIHFAPSFLMKRQMFLHHYLPAYYFGVLALGHALDITCTHVLKRK---KTFAYIFLGVFFCASYYFFNNHTAIIYGDEWTKEACKSSRWVS 738
                 *********************************************96666555...89***************************************** PP

    PMT_4TMC 198 sW 199
                 +W
  CCD23352.1 739 TW 740
                 ** PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.9   0.1     2e-50   1.2e-46       2     179 ..     355     515 ..     354     522 .. 0.95

  Alignments for each domain:
  == domain 1  score: 158.9 bits;  conditional E-value: 2e-50
         MIR   2 yLkggdvvRLfHshqdeyltiseqqqkqevflritlypsadaanssraLWeievvqkd..aw.rgglikwgkvyRlkHlaTgryLaseeekksplsese 97 
                 yL         Hshq++y+ +seqqq       itlyp+ d +n+    W+ie+ + +  ++ ++ ++++g+v++l H  T+++L+s+++ k+p+se++
  CCD23352.1 355 YL---------HSHQHNYPVGSEQQQ-------ITLYPHLDFNNE----WIIESNNAPgvTFkSFHNLSDGTVIKLLHPGTQCRLHSHDH-KAPVSENS 432
                 55.........***************.......************....********976335999************************.******** PP

         MIR  98 ddqkevsayglegfegd.nDk..veifekksttgmksaklvprdsyvrlqHvvtgcwLhstsvklkkekfekvqqkvicakeked 179
                 d+qkevs+yg+ gf+gd nD+  +ei+++ks +g++++++ ++++++rl+H+ +gc+L+s+++kl++++f+  qq+v+ca++++ 
  CCD23352.1 433 DWQKEVSCYGYPGFTGDgNDDwiIEIDKSKSVPGEAQERIIAINTKFRLKHALSGCYLFSHETKLPEWGFQ--QQEVTCAHSGKA 515
                 ******************9999*************************************************..********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 6108.89
//
Query:       CCD23353.1  [L=1107]
Description: hypothetical protein NDAI_0B03180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.3e-145  483.4   0.6   8.9e-145  482.9   0.6    1.2  1  DNA_pol_B       DNA polymerase family B
    2.3e-86  290.0   0.0    4.8e-86  289.0   0.0    1.6  1  DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
    4.9e-18   65.4   4.8    1.1e-17   64.2   4.8    1.6  1  zf-C4pol        C4-type zinc-finger of DNA polymerase delta
    1.5e-05   24.1   0.2    0.00052   19.0   0.0    2.5  2  DNA_pol_B_2     DNA polymerase type B, organellar and viral
    0.00064   19.5   0.0     0.0011   18.6   0.0    1.4  1  DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the ex


Domain annotation for each model (and alignments):
>> DNA_pol_B  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  482.9   0.6  2.5e-148  8.9e-145       1     459 []     556     983 ..     556     983 .. 0.97

  Alignments for each domain:
  == domain 1  score: 482.9 bits;  conditional E-value: 2.5e-148
                 S-HHHHHHS-HHHHHHHHHHHHHHHTTBE-B-----.--SS.-S----BE----EEESS-EEEEEETTHHHHHHHHTT-STTTCE-HCCHCC.T--BTT CS
   DNA_pol_B   1 iplsrvledgqqirveslLlrlakeegfilpdrtekkgkeeegYqGatVlePkkglydkpvlvlDFaSLYPsiiqahNlcyttlvaseeeak.eleaed 98 
                 +p+s++l++gqqi+v+s+L+r++ + ++++p++++++++e+  Y+GatV+eP++g+yd p+++lDF+SLYPsi++ahNlcyttl+++++ ++ +l+++ 
  CCD23353.1 556 VPFSYLLARGQQIKVVSQLFRKCIQIDTVIPNMSSQASDEQ--YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERlKLKKD- 651
                 58999**************************9999955555..*****************************************99988877666665. PP

                 ...TEEE-TCC-EEE-TTS---HHHHHHHHHHHHHHHHHHHHHCS--HHHHHHHHHHHHHHHHHHHHHHHHHTSTTSTT--HHHHHHHHHHHHHHHHHH CS
   DNA_pol_B  99 eyleveveprlvefvkksvregllpklLkdllakRkaikkelkeekdefekalldkqQlalKvtaNsvYGftGvansrlpclalAasvTtiGRemLekt 197
                   +e+ ++p++++fv+++vr+g+lp++L +l+++Rk++kk+lk+e+d+f++ +l+ +QlalK++aNsvYGftG++ ++lpcla+++svT+ GR+m+++t
  CCD23353.1 652 --EEYIISPNGDYFVTDKVRRGILPIILDELIQARKRAKKDLKNETDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAFGRDMIMTT 748
                 ..5999********************************************************************************************* PP

                 HHHHHHT...SSGGGT-SS.....T-EEEEEBSSEEEEE-S-SSHHHHHHHHHHHHHHHHT.TSTTT--EEEEEEEEEEEEEETTEEEEEEEEESSTTS CS
   DNA_pol_B 198 kelvekkaellskllalpeeaeeeklkviYGDTDSvfielkvkdveellkigkelaeevseklfkkplklefekvykkllLisKKkYaglkvektskan 296
                 k+ ve+k   ++k  ++++     ++ v+YGDTDSv+++++++d++e++++g+e+a+ vs+ lfk+p++lefek y+++lLi+KK+Yagl++++++k++
  CCD23353.1 749 KNAVEEK---YTKNKGYAD-----DAIVVYGDTDSVMVKFGTTDLKEAMRLGTEAAAFVST-LFKHPINLEFEKCYFPYLLINKKRYAGLYWTNPDKFD 838
                 *****99...777778877.....9************************************.************************************* PP

                 EEEEESSGGGSTTS-HHHHHHHHHHHHHHSSS....S-HHHHHHHHHHHHHHHHHHHHTT-S-GGGG-EEEEESS.CCCSSGCCSHHHHHHHHHHHHCS CS
   DNA_pol_B 297 klliKGvdlvRrdncklvkevikkvlelllkdeteersleeglealksilkdvleeleenkvplekfvlskelskepenyksknlphlevakrlkkrne 395
                 +l+ KG+  vRrd+c+lv+ v++kvl+++l +    r+++++l+++k+++    +++ +n+v+++k+++sk+l +   ny++++ ph+ +a rlkkr++
  CCD23353.1 839 RLDQKGLASVRRDSCSLVSIVMNKVLKKILIE----RNVPSALDFVKATI----NDILHNNVDISKLIISKTLAP---NYTNPQ-PHAVLAARLKKRDG 925
                 ********************************....**************....99*******************...9****9.************** PP

                 S---TTCEEEEEEBETSS.....SS-GGGTEEEHHHHHHCCSEB-HHHHHH.TTHHHHHHHHTTS CS
   DNA_pol_B 396 eapevgdrisYvivekkkevkkknllaseraedpeyvleknlpidieyYls.qllkevarlleai 459
                   p+vgdr++Yvi+         n++ ++raedp yvle+nl+id++yYl+ ql +++  ++++i
  CCD23353.1 926 MGPNVGDRVDYVITGG-------NDKLYNRAEDPLYVLEHNLQIDSKYYLNnQLQNPIISIIAPI 983
                 **************99.......579**********************************99876 PP

>> DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.0   0.0   1.3e-89   4.8e-86       2     337 .]     149     492 ..     148     492 .. 0.97

  Alignments for each domain:
  == domain 1  score: 289.0 bits;  conditional E-value: 1.3e-89
                     ECTTSEEEEEEEE---EEEEEES......SCGGHHHHHHHHHHHCCTTCCCEEEEEEEECCCCEECCTSSCCHHC.EEEEEESSTCHHHHHHHHH CS
  DNA_pol_B_exo1   2 teegksvcvnvfgfkpyfYceap......dgkeleevkeelkelyeelskkvtkivkvelvlkkslygyekkpvp.ylkvsvsnpnelkkirkel 89 
                     t+eg sv++nv+gfk+y+Y+ ap      d +el++++++l+el++ +++++   +++e+v k+s++gy  +    ++k++v++p+ ++k+r+ +
      CCD23353.1 149 TSEGCSVLCNVTGFKHYLYVPAPngiesiDPNELKNFINYLNELFGTTNQNGV--DSIEVVQKQSIWGYSGDGNLpFWKIYVTYPSLINKLRTGF 241
                     899****************999988888899999***********99988766..*****************9989******************* PP

                     HH........CCCCCCCCSSS--HHHHHHHHCTS-TTCEEEEE...TEEEEGCC--C-.SEEEEEETTTSCEETTTCC....S-EEEEEEEEEET CS
  DNA_pol_B_exo1  90 sp........leeivdvyeydvdylerflidnkivgfgwysvk...kylvraegkisncdveidcdvddliakpkese....pplrvlsFDIeck 169
                     ++          ++ ++y+ ++ y  r+++d++ivg++w++++   ++++++  k+s+c++e+ ++++dl+a+p+e++    +plr+lsFDIec+
      CCD23353.1 242 EKghytynswFTNGTTTYD-NIAYPLRLMVDCGIVGMSWITLPkgkYTMIPDASKLSTCQLEVCINYKDLVAHPAENDwshmAPLRILSFDIECA 335
                     99********899******.***********************99999*****************************9***************** PP

                     EETTSEETTTT..--EEEEEEEECCTC.SS.SEEEEEEECCCTSS----EE--SSTCSTTEEEEEESSHHHHHHHHHHHHHHH--SEEEESSTTT CS
  DNA_pol_B_exo1 170 skkgkfpdaensedpiiqIscvldglgekepearklftlrecaseeeedfeltpkpeypgvkvlefdsEkelLqaflefikqydPdvitgYNidn 264
                     ++ g fp++e   dp+iqI+ v+  +g+k+p+ r++ftl++c+            p+ +g++v+++d+E e+L+++ +fi + dPd i+gYN  n
      CCD23353.1 336 GRVGVFPEPEV--DPVIQIANVVSVTGAKKPFIRNVFTLNSCS------------PI-TGSQVFSHDTEEEMLSHWRQFILEADPDLIIGYNTTN 415
                     ***********..******************************............99.************************************* PP

                     THHHHHHHHHHHCCTCCHCG.SCCSCTCEECCCCESEE.....EEEECEEEETTSEEEEHHHHHHHHSSSSG-SHHHH CS
  DNA_pol_B_exo1 265 FDlpYilnRakelykvklsklgrlnkggrskvseigfs.....kqarekvkisgrihlDlyrvvkrklklpsYkLnav 337
                     FDlpY+ nRak+l++ +++ +grl k+ ++++++  fs     ++++++++i+gr++lDl+++++r++kl+sY+Lnav
      CCD23353.1 416 FDLPYLINRAKALKVQDFPYFGRL-KNVKQEIKDAIFSskaygTRESKNINIDGRLQLDLLQFAQREYKLRSYTLNAV 492
                     ************************.888888888888888999*********************************98 PP

>> zf-C4pol  C4-type zinc-finger of DNA polymerase delta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   4.8   3.1e-21   1.1e-17       1      70 []    1019    1090 ..    1019    1090 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.2 bits;  conditional E-value: 3.1e-21
    zf-C4pol    1 ClvCk...eklkkalCkkCrsdkqesllkllsrlkelekklneletvCqsCaqgsleeevkCdsrdCpvfYeR 70  
                  C +Ck   +k + +lC++C++++ e ++k l ++++le+k+++l+t+Cq+C  gsl++ev C++++C +fY+R
  CCD23353.1 1019 CKGCKgplKKGEGPLCSNCQERSGELYIKALYEVRDLEEKFARLWTECQRC-AGSLHNEVLCSNKNCDIFYMR 1090
                  999**55544459******9777777*************************.8*******************9 PP

>> DNA_pol_B_2  DNA polymerase type B, organellar and viral
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.5e-07   0.00052     211     274 ..     595     662 ..     568     721 .. 0.67
   2 ?    2.4   0.0     0.016        58      78     107 ..     808     837 ..     794     844 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.5e-07
  DNA_pol_B_2 211 kayrGGrc.ypsvlgiyeeniyvyDvnSlYPsamthypmPygkp....pfeeakavkeleekleekfgf 274
                  + y G  + +p+  g+y+ +i   D+nSlYPs+m+   + y++     ++e+ k +k+ e+ ++ + ++
   CCD23353.1 595 EQYEGATViEPI-RGYYDVPIATLDFNSLYPSIMMAHNLCYTTLcnkaTVERLKLKKDEEYIISPNGDY 662
                  468899995555.**********************9999999876554555555555555544422222 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.016
  DNA_pol_B_2  78 nleikKgkfpykavnelhliysyeqksdgf 107
                  nle++K +fpy  +n+ +  + y+++ d+f
   CCD23353.1 808 NLEFEKCYFPYLLINKKRYAGLYWTNPDKF 837
                  6799********************998887 PP

>> DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.2e-07    0.0011      33      88 ..     385     441 ..     348     530 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.2e-07
  DNA_pol_B_exo2  33 eessekelikkffegvekkkpql.VsfngrgfDlpvleyralkhgvsapkyfdegde 88 
                     ++++e+e++++  +++ ++ p l +++n  +fDlp l  ra + +v+   yf + ++
      CCD23353.1 385 SHDTEEEMLSHWRQFILEADPDLiIGYNTTNFDLPYLINRAKALKVQDFPYFGRLKN 441
                     4578*****************97369********************99999977654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 7620.80
//
Query:       CCD23354.1  [L=516]
Description: hypothetical protein NDAI_0B03190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-71  239.3   0.1    5.8e-71  238.9   0.1    1.1  1  Pkinase         Protein kinase domain
    1.7e-37  129.1   0.0    2.2e-37  128.8   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    2.1e-17   63.2   0.8    5.3e-17   61.9   0.8    1.7  1  FHA             FHA domain
    7.5e-08   32.6   0.0    2.5e-07   30.9   0.0    1.9  2  Yop-YscD_cpl    Inner membrane component of T3SS, cytoplasmic
      7e-06   25.1   0.0    9.4e-06   24.6   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
     0.0021   17.7   0.8        0.1   12.2   0.1    2.2  2  FTA2            Kinetochore Sim4 complex subunit FTA2
     0.0068   15.8   0.2       0.01   15.2   0.2    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.038   13.3   1.8          6    6.1   0.2    2.6  3  Kinase-like     Kinase-like
      0.087   12.3   2.4       0.33   10.4   2.4    1.9  1  YrbL-PhoP_reg   PhoP regulatory network protein YrbL
      0.099   12.2   2.3        1.1    8.8   2.3    2.2  1  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.9   0.1   3.2e-74   5.8e-71       4     264 .]     206     483 ..     203     483 .. 0.91

  Alignments for each domain:
  == domain 1  score: 238.9 bits;  conditional E-value: 3.2e-74
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladllerkgsls 96 
                  + lG+G +++V ++++k +g++vAvK++  ++++++k+ k++ +E +il +++h+niv+l+++f e     + + ylvle++  gel++++ +k++l 
  CCD23354.1 206 GKDLGSGHYATVKQGINKINGQTVAVKIFHPQQNDDQKKnKQFKEETSILMRIHHKNIVNLLDSFIEpisksQIQKYLVLEMIYDGELFERVVKKTTLR 304
                 689***************************99999888889************************999997667779********************** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.T..................TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSH CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLid.e..................kgelKitDFGlakelessskltsfvgtseYlAPEvlkeneysk 176
                 ++e+k i++qil+gl+ylH+++iiHrD+KpeNiL++ +                  + ++Ki+DFGlak   + + +++ +gt+ Y+APEvl++++y++
  CCD23354.1 305 QDETKAIFSQILTGLKYLHQQNIIHRDIKPENILLNiTkrtnpeqkqlgpwdeneiDIQVKIADFGLAKFTGEMQFTNTLCGTPSYVAPEVLTKKGYTS 403
                 ************************************75677777777777765444444**************************************** PP

                 HHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 177 kvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 kvD+Ws+Gvily  l+g ppfs++ g  + ++++ q         ++ + +p +++i++++++l+++ll  d +kR++++++++hp++
  CCD23354.1 404 KVDMWSAGVILYVCLCGFPPFSDQLGPPSLKEQILQ--------AKYAFYTPYWDNIDDSILHLISNLLVLDANKRYSVDDAINHPWF 483
                 **********************77777755555555........3678999************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.8   0.0   1.2e-40   2.2e-37       3     253 ..     205     475 ..     203     480 .. 0.87

  Alignments for each domain:
  == domain 1  score: 128.8 bits;  conditional E-value: 1.2e-40
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.....SSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkhpnivkllgvct.....keepllivteyvkgGdLlkfLr 93 
                  lgk+lG+G++++V +g  k     + ++VavK++  +++ ++++++++ ee++i+++++h+niv+ll   +     ++ + ++v+e++  G+L + + 
   CCD23354.1 205 LGKDLGSGHYATVKQGINK----INGQTVAVKIFhpQQNDDQKKNKQFKEETSILMRIHHKNIVNLLDSFIepiskSQIQKYLVLEMIYDGELFERVV 298
                  6899*************99....78899*****94345556666899********************99987775444459****************9 PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...................TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...................nkvvkisDfGLardiekddeyvkkeeaklpvkWm 172
                  kk  ++l+ +++  +  q+  G++yL++++++Hrd+   N+Ll+                    + +vki+DfGLa+ +    e++ +++      ++
   CCD23354.1 299 KK--TTLRQDETKAIFSQILTGLKYLHQQNIIHRDIKPENILLNItkrtnpeqkqlgpwdeneiDIQVKIADFGLAKFT---GEMQFTNTLCGTPSYV 391
                  98..99*************************************98899*************99999***********99...55555666667779** PP

                  -HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHHH.HTTEES-BB..TTSBHHHHHHHHHHT-SSGGGS--HH CS
  Pkinase_Tyr 173 apEslkekkftsksDvWsfGvllwEiftlgespypgl.kneevlekl.kegkrlekp..ekcpeelyelmkkcweedpeeRptfs 253
                  apE+l++k +tsk D+Ws Gv+l+  ++ g  p+++   + ++ e++ ++++   +p  +++ +++ +l+++ +  d+++R +  
   CCD23354.1 392 APEVLTKKGYTSKVDMWSAGVILYVCLC-GFPPFSDQlGPPSLKEQIlQAKYAFYTPywDNIDDSILHLISNLLVLDANKRYSVD 475
                  ************************6666.99999988777788877768888877664478889999999998888888887765 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.8   2.9e-20   5.3e-17       1      69 []      57     129 ..      57     129 .. 0.94

  Alignments for each domain:
  == domain 1  score: 61.9 bits;  conditional E-value: 2.9e-20
                 EEEESSTTSSEETTSTTSTTTEEEEEEETT......CEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA   1 vtiGRssdcdivlddpsiSrkHalikfdkg......sgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 +tiGRs++cdivl +  iS++H++++  ++      +  + ++D +S+nGtf+Ng+r+ k ++  Lk+gd++ lG
  CCD23354.1  57 TTIGRSRSCDIVLTETDISTVHCELYLIEMnmgnnsRSLINIVD-KSRNGTFINGNRLVK-KDCILKNGDRVVLG 129
                 59***********************88777788999999*****.9*************9.9**********998 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.4e-10   2.5e-07      16      84 ..      54     131 ..      43     139 .. 0.76
   2 ?   -3.4   0.0         7   1.3e+04      58      73 ..     478     494 ..     466     507 .. 0.59

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.4e-10
                   TEEEEEES-TT-SEE---TTS-TT-EEEEE......ETTEEEEEE.-CESS--EETTEE-SECC..--TTSEEEETTE CS
  Yop-YscD_cpl  16 egevviGsdedcDivLsDkevsrkhlkLev......eeesvrled.lgsrngllvngerveele..lrpgdvlelGtt 84 
                   +   +iG++++cDivL+  ++s +h++L++      ++++  ++   +srng+++ng+r  ++   l+ gd++ lG +
    CCD23354.1  54 KSVTTIGRSRSCDIVLTETDISTVHCELYLiemnmgNNSRSLINIvDKSRNGTFINGNRLVKKDciLKNGDRVVLGKA 131
                   45679*********************99863333322233333321589**********9866678**********75 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7
                   SS--EETTEE-S.ECC- CS
  Yop-YscD_cpl  58 rngllvngerve.elel 73 
                    n  + n++r+e + +l
    CCD23354.1 478 INHPWFNDTRQEnTVSL 494
                   45566666666522223 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   5.2e-09   9.4e-06     312     397 ..     312     407 ..     163     419 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 5.2e-09
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilit..........dskke.......gerkglLiDLDlakelsddssesgarertGTleFmaievlkge 389
                     + + ++g++ L+ +++i+HrDi  +Nil++          +            + +  ++D+ lak +++ + +   ++  GT+ ++a evl ++
      CCD23354.1 312 FSQILTGLKYLH-QQNIIHRDIKPENILLNitkrtnpeqkQ---LgpwdeneIDIQVKIADFGLAKFTGEMQFT---NTLCGTPSYVAPEVLTKK 399
                     5667899*****.*****************88888775550...25554444788999***********74444...579************987 PP

  Pkinase_fungal 390 eHsyrhDL 397
                       +   D+
      CCD23354.1 400 GYTSKVDM 407
                     77776666 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1      0.02        36      42      68 ..     223     249 ..     190     276 .. 0.67
   2 !   12.2   0.1   5.7e-05       0.1     160     204 ..     297     338 ..     289     341 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.02
        FTA2  42 kirgkeYALKlFrfleaeele....eaeedl 68 
                 ki+g++ A+K+F  ++ ++++         +
  CCD23354.1 223 KINGQTVAVKIFHPQQNDDQKknkqF----K 249
                 899*********99977777644431....2 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 5.7e-05
        FTA2 160 IVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 +VK+    +  +  + ++++++l  lk lh++ I++rD+k+en++
  CCD23354.1 297 VVKK---TTLRQDETKAIFSQILTGLKYLHQQNIIHRDIKPENIL 338
                 5666...33444556789************************975 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   5.8e-06      0.01      91     155 ..     280     343 ..     240     352 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 5.8e-06
         Kdo  91 rAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 +  l+ e + + +  e +++k  +l +  ++a++ ++ +  + lh+ ++ H+d+ + nill+ ++
  CCD23354.1 280 QKYLVLEMIYDGELFERVVKK-TTLRQDETKAIFSQILTGLKYLHQQNIIHRDIKPENILLNITK 343
                 556677777776666777775.6799999********************************9877 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.57     1e+03      34      73 ..     223     262 ..     202     283 .. 0.78
   2 ?    6.1   0.2    0.0033         6     119     178 ..     286     340 ..     269     344 .. 0.81
   3 ?    5.2   0.0    0.0061        11     225     288 .]     399     471 ..     381     471 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.57
  Kinase-like  34 qetgeplavkvfllpseaskkdlerlkeqelairllrgkn 73 
                  +  g+ +avk+f  +++  +k+ +++ke++  + ++  kn
   CCD23354.1 223 KINGQTVAVKIFHPQQNDDQKKNKQFKEETSILMRIHHKN 262
                  5568999999999999999999999999988877766666 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0033
  Kinase-like 119 aasvdleilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllld 178
                  ++ +d e++  v++k   ++ + + i  ++lT        +L+++ ++h +++++n+ll+
   CCD23354.1 286 EMIYDGELFERVVKKTTLRQDETKAIFSQILTG-----LKYLHQQNIIHRDIKPENILLN 340
                  566677788888888888877777788888887.....79*****************996 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0061
  Kinase-like 225 tkmthkldaWqlGlviyriwclklPltlat..eeakeew......kfklck.kipekvkaLlkkfLqlsqedR 288
                    +t k+d W  G+  y   c   P+  +   +  ke+        + +   +i + +  L+ ++L l+ ++R
   CCD23354.1 399 KGYTSKVDMWSAGVILYVCLCGFPPFSDQLgpPSLKEQIlqakyaFYTPYWdNIDDSILHLISNLLVLDANKR 471
                  45899****************9999865421133333334444433333335888888888888888888877 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.4   0.00019      0.33      95     156 ..     283     343 ..     225     351 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00019
  YrbL-PhoP_reg  95 lvvekirdadGnvaktLedlvkkeeltaelkeaLdefleelldnhivtndlsakNivvkkns 156
                    lv e+i d +    + +++   ++  t+++ +++ + l++l +++i+ +d++++Ni+++  +
     CCD23354.1 283 LVLEMIYDGE-LFERVVKKTTLRQDETKAIFSQILTGLKYLHQQNIIHRDIKPENILLNITK 343
                    5666666544.334445555545555666889999999******************987655 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.3   0.00061       1.1      73     140 ..     273     340 ..     216     345 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00061
                 --EEEEETTEEEEE--EETTEEGGBHHHCG.-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEE CS
        RIO1  73 Pkpielkrhvlvmefigedgvaapklkdve.eeeeaeelyeevleemrklykeaglvHaDLSeyNvlvd 140
                 P      +  lv+e+i + ++    +k+++ +++e++ ++ ++l  ++ l  +++++H D+   N+l++
  CCD23354.1 273 PISKSQIQKYLVLEMIYDGELFERVVKKTTlRQDETKAIFSQILTGLKYLH-QQNIIHRDIKPENILLN 340
                 44445557889*****94444455556666559************876665.99*********9*9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3607.87
//
Query:       CCD23355.1  [L=352]
Description: hypothetical protein NDAI_0B03200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   4.8e-117  390.5   0.1   5.6e-117  390.3   0.1    1.0  1  ArsA_ATPase  Anion-transporting ATPase
    9.9e-10   38.6   0.8    7.1e-09   35.8   0.1    2.5  2  AAA_31       AAA domain
    4.3e-09   36.5   0.0    8.3e-09   35.6   0.0    1.6  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
     0.0011   18.5   1.4     0.0085   15.6   0.5    2.5  3  ParA         NUBPL iron-transfer P-loop NTPase
     0.0011   18.5   0.0     0.0022   17.5   0.0    1.4  1  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
  ------ inclusion threshold ------
      0.018   14.6   0.0      0.037   13.6   0.0    1.5  1  AAA_25       AAA domain
      0.027   14.1   0.0        0.7    9.5   0.0    2.2  2  SRP54        SRP54-type protein, GTPase domain
       0.06   12.8   0.0       0.12   11.9   0.0    1.4  1  PhoH         PhoH-like protein
      0.082   12.6   0.2       0.54    9.9   0.0    2.3  2  AAA_24       AAA domain
      0.092   12.7   0.8        9.1    6.3   0.0    2.6  2  STI1         STI1 domain


Domain annotation for each model (and alignments):
>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.3   0.1  3.1e-120  5.6e-117       1     304 [.      18     333 ..      18     334 .. 0.94

  Alignments for each domain:
  == domain 1  score: 390.3 bits;  conditional E-value: 3.1e-120
                  -EEEEEEESTTSSHHHHHHHHHHH..HHHTTS-EEEEE-STTTHHHHHHTS--BSS-EEET..SSEEEEE--HH........HHHHHHHCCHHGGGSC CS
  ArsA_ATPase   1 lkvilvgGKGGVGKttvsaatavk..lsekgkkvllistDPAhslsDsfdqklgkeptkvk..eNLsavEidpe........veleeakqevqkeeea 86 
                  +k+i+vgGKGGVGKtt+s+++a++  l++  k++llistDPAh+lsD+f +k+gk+++kv+  +NLs++Eidp+        +++++a+ + ++ +++
   CCD23355.1  18 HKWIFVGGKGGVGKTTSSCSIAIQmaLAQPTKQFLLISTDPAHNLSDAFGEKFGKDARKVTgmNNLSCMEIDPNaalkdmndMAVSRANADGTNDDDP 115
                  69*********************97789**********************************************777776666666666666666555 PP

                  CHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHH......CSSSSEEEEESBSCCHTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHCHHH CS
  ArsA_ATPase  87 llgleeledvlaeelaslPGideilsfeellkyvk......eeeydvvvlDtaPTGhtlrllslpevleklleklvklkeklsplakqlvkllglggv 178
                  l g   + ++lae + s+PGide+lsf+e++k++k      +e++d+v++DtaPTGhtlr+l+lp++l+kllek+ +l++kl+p+++++    g+g+v
   CCD23355.1 116 LGG-LLQGGALAELTGSIPGIDEALSFMEVMKHIKrqengeSETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGELTGKLGPMLNMM----GAGNV 208
                  555.8899***************************99999999******************************************9988....88999 PP

                  HHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEEE.E-TTCSSS.TSHHHHHHHHHHHHHHHHHHHH CS
  ArsA_ATPase 179 sieealeeleetkeeikkveeiltdpertsfrlVvipEklslkEteRaikeLkkygikvdavivNk.llpeeeqe.nCeflearkkiqkkylkeieel 274
                  +i ++l+el++++e+ik   +++tdp+ t+f++V+i+E+lsl+EteR+i+eL +y+++v+++ivN+ l++e++qe nC++++ar+k+qkkyl++i+el
   CCD23355.1 209 DIASKLNELKSNVESIK---QQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQlLFAEDDQEhNCKRCQARWKMQKKYLDQIDEL 303
                  99999999998888888...9*********************************************8899999999********************** PP

                  TTTSEEEEEE--SS-S-SHHHHHHHHHHHC CS
  ArsA_ATPase 275 fedlevvklplleeEvvGlekleklselly 304
                  +ed+++vk+pl+++E++Gl++l+k+s++l+
   CCD23355.1 304 YEDFHLVKMPLCAGEIRGLNNLTKFSQFLN 333
                  ****************************97 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   3.9e-12   7.1e-09       8     128 ..      24     169 ..      19     178 .. 0.53
   2 ?   -1.0   0.1      0.81   1.5e+03      68     118 ..     253     304 ..     209     313 .. 0.54

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.9e-12
      AAA_31   8 nqKGGvGKTTtsvnlaaala..klgkkvLlvDlDpQanattglgiekneiektlyev....................lieeknikeaiiktkvenl.dl 83 
                   KGGvGKTT+s+ +a  +a  +  k+ Ll+  Dp  n++ ++g +  +  ++++ +                     ++++n + +   +    l  l
  CCD23355.1  24 GGKGGVGKTTSSCSIAIQMAlaQPTKQFLLISTDPAHNLSDAFGEKFGKDARKVTGMnnlscmeidpnaalkdmndmAVSRANADGTNDDD---PLgGL 119
                 57*********99888765543889****************77754333223333322222222222221111000022222222222211...11122 PP

      AAA_31  84 ipssidLaeaeielvelekk......eeilkellekvkdeYDyiiiDcpPs 128
                 +     Lae+  ++ ++++        +++k++ +  ++++D +i+D+ P+
  CCD23355.1 120 L-QGGALAELTGSIPGIDEAlsfmevMKHIKRQENGESETFDTVIFDTAPT 169
                 2.2223444444444444444443323334555566667799999999997 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.81
      AAA_31  68 nikeaiiktkvenldlipssidLaeaeiel..velekkeeilkellekvkdeY 118
                  i+e+i   +++ +++i+ ++ +ae ++e    + + + ++ k++l+++++ Y
  CCD23355.1 253 LIQELIS-YDMDVNSIIVNQLLFAEDDQEHncKRCQARWKMQKKYLDQIDELY 304
                 3333333.344444555555555554443300222333333456666665555 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   4.6e-12   8.3e-09       2     105 ..      21     230 ..      20     274 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 4.6e-12
                 EEEESSTTSSHHHHHHHHHH..HHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................ CS
                 xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................ RF
        CbiA   2 aiastkGGvGKTtlaanLar..alarrglrVllvDaDpqannlaileglendiep............................................ 54 
                 +++++kGGvGKTt ++++a+  ala+  ++ ll+ +Dp  n++  ++g +  ++                                             
  CCD23355.1  21 IFVGGKGGVGKTTSSCSIAIqmALAQPTKQFLLISTDPAHNLSD-AFGEKFGKDArkvtgmnnlscmeidpnaalkdmndmavsranadgtndddplgg 118
                 689****************933555679***************9.66666666666788**************************************** PP

                 ..............................................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS...-T CS
                 ..............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ..............................................................dlkrllellealgkkkalllkiagvvlnrvdgeneet 91 
                                                                               +l++lle + +l +k+ + l+++g +   + ++   +
  CCD23355.1 119 llqggalaeltgsipgidealsfmevmkhikrqengesetfdtvifdtaptghtlrflqlpnTLSKLLEKFGELTGKLGPMLNMMGAGNVDIASK--LN 215
                 ****************************************************9998888888777777777777777655588888888888877..89 PP

                 TCHHHHHHHHHHC.T CS
                 xxxxxxxxxxxxx.x RF
        CbiA  92 llkealeelkqry.g 105
                 +lk+++e +kq++  
  CCD23355.1 216 ELKSNVESIKQQFtD 230
                 999999999998843 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.5   4.7e-06    0.0085       4      30 ..      18      44 ..      15      57 .. 0.79
   2 ?   -1.3   0.0      0.66   1.2e+03     183     218 ..      60      95 ..      49     111 .. 0.76
   3 ?    0.2   0.0      0.23   4.2e+02     135     186 ..     232     283 ..     221     334 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.7e-06
        ParA  4 kviavlSgKGGVGKStvavnlAlaLak 30
                ++ + + gKGGVGK+t ++++A+++a 
  CCD23355.1 18 HKWIFVGGKGGVGKTTSSCSIAIQMAL 44
                6667789***************99873 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.66
        ParA 183 gekteifgkgggeklaeelgvpllgeipldpeirea 218
                 ++ ++ fg++ g+++ + +g++ l+ + +dp+ + +
  CCD23355.1  60 HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPNAALK 95 
                 566789999999999999999999999999976533 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.23
        ParA 135 plagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekt 186
                 +l+  v V   + ++l ++++ i+ + + +++v +++ N   f+ ++ +++ 
  CCD23355.1 232 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAEDDQEHNC 283
                 6778899999999999999999999999999999999998888766544433 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.2e-06    0.0022       3      41 ..      21      61 ..      19      71 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-06
   Fer4_NifH  3 iaiyGkGGiGksttsqnlsa..alaemgkkvlivGCDPkaD 41
                i + GkGG+Gk+t+s+ +++  ala+  k+ l++  DP ++
  CCD23355.1 21 IFVGGKGGVGKTTSSCSIAIqmALAQPTKQFLLISTDPAHN 61
                5678**********99987522667888**********875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.1e-05     0.037      33      63 ..      18      48 ..       4      60 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.1e-05
      AAA_25 33 gelallaGapgtGKttlaldlalavatGkpw 63
                ++ + + G +g+GKtt  +++a+ +a+ +p 
  CCD23355.1 18 HKWIFVGGKGGVGKTTSSCSIAIQMALAQPT 48
                6678899*******************87775 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00039       0.7       4      38 ..      21      57 ..      18      60 .. 0.78
   2 ?    2.0   0.0     0.076   1.4e+02      77      92 ..     152     167 ..     133     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00039
                EEEEESTTSSHHHHHHHHHHHHHHT..TS-EEEEEES CS
       SRP54  4 illvGlqGaGKTttlaKLaallkke..gkkvllvaaD 38
                i + G  G+GKTt+   +a ++      k+ ll+++D
  CCD23355.1 21 IFVGGKGGVGKTTSSCSIAIQMALAqpTKQFLLISTD 57
                44445667***********887665579999999999 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.076
                 HHHHHTTSSEEEEEE- CS
       SRP54  77 ekakeekidvvlvDTa 92 
                 e+ ++e +d+v+ DTa
  CCD23355.1 152 ENGESETFDTVIFDTA 167
                 5667889********9 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.5e-05      0.12      17      61 ..      14      62 ..       7      83 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.5e-05
                H..H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEE..EE-S--T CS
        PhoH 17 k..kndivfaiGpaGtGKtylavalavealkkkkvkriil..trpavea 61
                +  +++ +f+ G+ G GKt  ++++a+++  ++  k+++l  t pa + 
  CCD23355.1 14 NstTHKWIFVGGKGGVGKTTSSCSIAIQMALAQPTKQFLLisTDPAHNL 62
                44478899***********************999998766114455554 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0    0.0003      0.54       5      74 ..      21     167 ..      17     174 .. 0.71
   2 ?   -2.4   0.0       1.9   3.4e+03      46      66 ..     286     307 ..     253     310 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0003
      AAA_24   5 iliyGpsgiGKTtlakel.........gpkplfi..................dtekGlksldadkfpdie..................swedfldevve 58 
                 i++ G+ g+GKTt+  ++         ++++l+i                  d                                   +++d+ d +v+
  CCD23355.1  21 IFVGGKGGVGKTTSSCSIaiqmalaqpTKQFLLIstdpahnlsdafgekfgkD----------------ArkvtgmnnlscmeidpnaALKDMNDMAVS 103
                 77889********9999999999998888888885555555555555555552................033334444444444444477777777777 PP

      AAA_24  59 l................................................aaeladyktlviDti 74 
                                                                  + e ++++t+++Dt+
  CCD23355.1 104 RanadgtndddplggllqggalaeltgsipgidealsfmevmkhikrqeNGESETFDTVIFDTA 167
                 7777788888888888888888888888888888888888888888888999999999999996 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.9
      AAA_24  46 ie.swedfldevvelaaelady 66 
                 ++  w++ +++++++++ ++d+
  CCD23355.1 286 CQaRWKMQKKYLDQIDELYEDF 307
                 2245666666666666655555 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.5     0.033        59      26      47 ..      82     103 ..      80     105 .. 0.83
   2 ?    6.3   0.0    0.0051       9.1      23      46 ..     210     233 ..     207     238 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.033
        STI1  26 kleeiqsNPqalqqymsDprim 47 
                  l  ++ +P+a+ + m+D  ++
  CCD23355.1  82 NLSCMEIDPNAALKDMNDMAVS 103
                 5777999***********7775 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0051
        STI1  23 fvakleeiqsNPqalqqymsDpri 46 
                   +kl+e++sN  ++ q++ Dp+ 
  CCD23355.1 210 IASKLNELKSNVESIKQQFTDPDL 233
                 5689******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2482.86
//
Query:       CCD23356.1  [L=306]
Description: hypothetical protein NDAI_0B03210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0013   18.5  13.3     0.0013   18.5  13.3    2.3  2  Lebercilin    Ciliary protein causing Leber congenital amauro
  ------ inclusion threshold ------
      0.074   13.1   0.6      0.074   13.1   0.6    2.9  4  FlpD          Methyl-viologen-reducing hydrogenase, delta sub
       0.16   12.5   0.1       0.16   12.5   0.1    3.3  4  CCDC74_C      Coiled coil protein 74, C terminal
       0.45   10.2   1.2       0.99    9.1   1.2    1.6  1  DUF4239       Protein of unknown function (DUF4239)


Domain annotation for each model (and alignments):
>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.2  24.0         4   1.8e+04      60     184 ..      12     137 ..       4     145 .. 0.66
   2 !   18.5  13.3   2.8e-07    0.0013      15      83 ..     164     232 ..     156     238 .. 0.91

  Alignments for each domain:
  == domain 1  score: -7.2 bits;  conditional E-value: 4
  Lebercilin  60 qllarhneEvrvlrerlRksqekerelekklkekeaell..rlkdklkklkkLsedknLaereeLqkkLeeleakleekeekikeLerkleleeksfrr 156
                 q l++ ++ v+ l+++ +++++k+++ + k ke e+e     ++++l+   ++s +++ +e e     +++ e++ e+++ k +e e  + +e+++ ++
  CCD23356.1  12 QQLEEARKRVEELKKKKKNKKNKNKKNKAKEKEDENETVdvDTNEDLTPAPEVSINQDVPEAEAEDDAVATKEQENEDTSLKPEEEEVTAVQETEADET 110
                 444444445555555555555555544444444444443224677788888899999999999999999999999999999988888888888888888 PP

  Lebercilin 157 qlaaekkktkeaqeevkalqeeierlkq 184
                 + a++++k+   +e+++++ +++e++++
  CCD23356.1 111 ESAVKSEKIT-GEEKIDETVSNVENIST 137
                 8888877764.35556666666666555 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 2.8e-07
  Lebercilin  15 eLqnelaelqskleelrkEnklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlrerlRksqeke 83 
                 + ++++++l++kleel+ Enk Lk  +  q+  ++ +e + a+L q l+  ++E++ ++++l+++ e+ 
  CCD23356.1 164 KKKDKINQLNQKLEELTIENKRLKFTNIEQDTDIEELEAEIAKLKQSLQAKDAELERTKDELKEALEER 232
                 55789**********************************************************987665 PP

>> FlpD  Methyl-viologen-reducing hydrogenase, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.5      0.68     3e+03      72      86 ..      15      29 ..       5      45 .. 0.70
   2 ?   -2.0   0.0      0.76   3.4e+03      67      87 ..     118     138 ..     105     162 .. 0.70
   3 ?   13.1   0.6   1.6e-05     0.074      72     119 ..     163     211 ..     153     214 .. 0.85
   4 ?   -1.1   0.0      0.41   1.8e+03      75     115 ..     219     259 ..     213     265 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.68
        FlpD 72 ekaerrveklkelle 86
                e+a++rve+lk+  +
  CCD23356.1 15 EEARKRVEELKKKKK 29
                456777777776544 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.76
        FlpD  67 yvkGnekaerrveklkellee 87 
                  ++G+ek++++v++++++ + 
  CCD23356.1 118 KITGEEKIDETVSNVENISTG 138
                 567788888888887776554 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 1.6e-05
        FlpD  72 ekaerrveklkelleelgiepeRvrleevsaa.egekfaevikefveki 119
                 ek+++++++l++ leel ie++R+++++++ + + e++ + i ++++++
  CCD23356.1 163 EKKKDKINQLNQKLEELTIENKRLKFTNIEQDtDIEELEAEIAKLKQSL 211
                 788999***********************97625677888888777766 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.41
        FlpD  75 errveklkelleelgiepeRvrleevsaaegekfaevikef 115
                 er+ ++lke+lee +  pe   ++ +s ++g +  +  + f
  CCD23356.1 219 ERTKDELKEALEERKSRPEANPFQFASFNDGSSGMNSHDGF 259
                 67778999999999999999888888888877666655555 PP

>> CCDC74_C  Coiled coil protein 74, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9  10.4         4   1.8e+04      21      64 ..       4      53 ..       2      81 .. 0.74
   2 ?    0.1   1.3      0.25   1.1e+03      24      63 ..      82     118 ..      77     146 .. 0.74
   3 ?   -3.8   0.5       3.9   1.7e+04      30      44 ..     168     182 ..     156     187 .. 0.50
   4 ?   12.5   0.1   3.7e-05      0.16       7      63 ..     194     250 ..     189     282 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4
    CCDC74_C 21 qnanslQaqElqrlKslLeevlnskkatseayllaksyvkdee......d 64
                q+a+++ aq l++ +   ee+ ++kk + ++ +  k++ k++e      d
  CCD23356.1  4 QEAEDKRAQQLEEARKRVEELKKKKKNKKNKNKKNKAKEKEDEnetvdvD 53
                6899999999*999999999999999999877777887777765444331 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.25
    CCDC74_C  24 nslQaqElqrlKslLeevlnskkatseayllaksyvkdee 63 
                  ++Q +E ++lK   eev+  + ++++    ++s vk e+
  CCD23356.1  82 TKEQENEDTSLKPEEEEVTAVQETEAD---ETESAVKSEK 118
                 678999999999999999998888887...5555555554 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 3.9
    CCDC74_C  30 ElqrlKslLeevlns 44 
                  +++l   Lee++ +
  CCD23356.1 168 KINQLNQKLEELTIE 182
                 344444444444444 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 3.7e-05
    CCDC74_C   7 pptlqeCeviIrqlqnanslQaqElqrlKslLeevlnskkatseayllaksyvkdee 63 
                  + ++e e+ I +l+++ +    El+r K  L+e+l+++k  +ea     ++ +d+ 
  CCD23356.1 194 DTDIEELEAEIAKLKQSLQAKDAELERTKDELKEALEERKSRPEANPFQFASFNDGS 250
                 5678888999999*999999999*********************9999988888876 PP

>> DUF4239  Protein of unknown function (DUF4239)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.2   0.00022      0.99      72     139 ..     177     244 ..     149     247 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00022
     DUF4239  72 eerslvrasrgelslkasseltkLldllaevkgdassesaaveellseiaqltelRakRisdeavalp 139
                 ee + ++++++  ++ ++ ++++L++ +a++k++ + ++a  e + +e+ ++ e R++R  +  ++++
  CCD23356.1 177 EELTIENKRLKFTNIEQDTDIEELEAEIAKLKQSLQAKDAELERTKDELKEALEERKSRPEANPFQFA 244
                 3455666666688999*******************************************777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4496  (0.250767); expected 358.6 (0.02)
Passed bias filter:                      942  (0.0525406); expected 358.6 (0.02)
Passed Vit filter:                       294  (0.016398); expected 17.9 (0.001)
Passed Fwd filter:                       106  (0.00591221); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.64u 0.37s 00:00:02.00 Elapsed: 00:00:00.55
# Mc/sec: 1665.29
//
Query:       CCD23357.1  [L=193]
Description: hypothetical protein NDAI_0B03220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-06   26.5   1.2    1.4e-05   25.3   1.2    1.7  1  zf-met       Zinc-finger of C2H2 type
    4.7e-05   23.6   1.5    9.7e-05   22.6   1.5    1.6  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
      0.028   15.2   0.6      0.075   13.9   0.6    1.7  1  zf-C2H2_4    C2H2-type zinc finger
      0.033   14.3   0.3      0.033   14.3   0.3    2.2  3  SNRNP27      U4/U6.U5 small nuclear ribonucleoproteins
      0.064   13.7   2.3       0.16   12.5   2.3    1.7  1  zf-C2H2      Zinc finger, C2H2 type
       0.15   11.8   0.2        0.4   10.5   0.2    1.7  1  DUF3953      Protein of unknown function (DUF3953)


Domain annotation for each model (and alignments):
>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   1.2   4.5e-09   1.4e-05       1      25 []      76     100 ..      76     100 .. 0.99

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 4.5e-09
      zf-met   1 fyCelCnvtfnsesqlksHlqGKkH 25 
                 fyC +C+ tf++  q+++Hl+ K+H
  CCD23357.1  76 FYCTICDLTFKDTLQFINHLNHKTH 100
                 8***********************9 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   1.5   3.2e-08   9.7e-05       2      22 ..      76      96 ..      75     100 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.2e-08
                 CBBTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHlk 22
                 fYC +Cd +Fk+  ++ nHl+
   CCD23357.1 76 FYCTICDLTFKDTLQFINHLN 96
                 9*******************8 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.6   2.5e-05     0.075       1      21 [.      76      96 ..      76      98 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.5e-05
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlk 21
                f+C+iC+ +F++  ++ +Hl+
  CCD23357.1 76 FYCTICDLTFKDTLQFINHLN 96
                89*****************86 PP

>> SNRNP27  U4/U6.U5 small nuclear ribonucleoproteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.9   5.7e+03      33      43 ..      39      49 ..      20      60 .. 0.61
   2 ?   -2.5   0.1       1.9   5.5e+03      21      36 ..     146     161 ..     141     167 .. 0.59
   3 ?   14.3   0.3   1.1e-05     0.033       3      20 ..     176     193 .]     174     193 .] 0.89

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.9
     SNRNP27 33 kkkkrkyRQYM 43
                k+k ++y Q M
  CCD23357.1 39 KQKYTNYDQLM 49
                45555555555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
     SNRNP27  21 kkvegnnegavkkkkk 36 
                 kk e+n  +  kk+k+
  CCD23357.1 146 KKREDNGDSDRKKNKS 161
                 5555555555555554 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 1.1e-05
     SNRNP27   3 eeemmklmGfggFdtTkg 20 
                 ++e++k+mGf++F+++k+
  CCD23357.1 176 NNEIAKMMGFQSFGSSKK 193
                 6899************95 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.3   5.2e-05      0.16       1      22 [.      76      97 ..      76     100 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.2e-05
                EEETTTTEEESSHHHHHHHHHC CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirt 22
                ++C++C+ +Fk+  ++ +H++ 
  CCD23357.1 76 FYCTICDLTFKDTLQFINHLNH 97
                89*****************986 PP

>> DUF3953  Protein of unknown function (DUF3953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.2   0.00013       0.4       9      23 ..      60      74 ..      60      80 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
     DUF3953  9 altiGieEfkkenkf 23
                +lt+G++Efkk + f
  CCD23357.1 60 LLTTGLSEFKKGKQF 74
                69*********5444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1135  (0.0633053); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1463.12
//
Query:       CCD23358.1  [L=425]
Description: hypothetical protein NDAI_0B03230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-39  133.1   3.6    5.6e-39  133.1   3.6    2.9  3  RPN6_N        26S proteasome regulatory subunit RPN6 N-termin
    1.5e-16   60.8   2.1    2.4e-16   60.2   0.0    2.4  3  PCI           PCI domain
    1.6e-09   37.3   0.6    1.3e-08   34.4   0.2    2.6  2  RPN6_C_helix  26S proteasome subunit RPN6 C-terminal helix do
      8e-05   22.9   4.1      0.018   15.4   0.4    3.3  3  TPR_20        Tetratricopeptide repeat
    8.6e-05   22.8   6.7     0.0016   18.7   0.5    3.5  4  TPR_12        Tetratricopeptide repeat
    0.00011   21.6   1.8    0.00022   20.6   1.8    1.6  1  TPR_15        Tetratricopeptide repeat
    0.00082   20.0   0.2      0.015   16.0   0.1    2.7  2  TPR_16        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.021   14.9   2.4      0.042   13.9   0.7    2.4  2  Rsbr_N        Rsbr N terminal
       0.12   12.7   2.7       0.57   10.6   0.7    3.0  2  FRB_dom       FKBP12-rapamycin binding domain
       0.13   12.0   3.4       0.12   12.2   0.4    2.5  4  HMW1C_N       HMW1C N-terminal
       0.15   11.4   1.0       0.23   10.8   0.8    1.4  1  TPR_MalT      MalT-like TPR region
       0.21   11.8  13.7       0.86    9.9   0.3    4.8  5  TPR_2         Tetratricopeptide repeat
        0.4   11.2   6.4        8.1    7.0   0.1    4.1  4  TPR_19        Tetratricopeptide repeat
        1.1    9.5   4.2        1.5    9.1   1.7    2.5  2  DUF4606       Domain of unknown function (DUF4606)
        1.7    9.1   8.4        0.8   10.1   1.2    3.1  3  Syntaxin_2    Syntaxin-like protein


Domain annotation for each model (and alignments):
>> RPN6_N  26S proteasome regulatory subunit RPN6 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   3.6   4.7e-42   5.6e-39       1     117 []       9     127 ..       9     127 .. 0.96
   2 ?   -0.6   0.7       1.4   1.7e+03      41      74 ..     151     187 ..     131     190 .. 0.51
   3 ?   -1.5   0.0       2.6   3.2e+03      75      94 ..     259     278 ..     257     296 .. 0.76

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 4.7e-42
      RPN6_N   1 Aeelaks.dpkeaeelykeilskks.kedeealreqeqalleLgelyrdqkkaeeLaelikesrsflssiaKaKtaKlvrtLldlfskipnslelqiev 97 
                 A++l+++ ++++ae+ y ++++k+  +++++  +e e+++leLg+ly +++ +++L+e+i++s+++++++aK+KtaK+++tL+++f++ip+sl++qi v
  CCD23358.1   9 ARKLVEDkQYEKAEQEYLQLINKDLsSNSDKVRNEMESCILELGQLYVSTNAKDKLREFIPRSTDYMMQFAKSKTAKVLKTLIEKFENIPDSLDDQIFV 107
                 67888887****************967777888999*************************************************************** PP

      RPN6_N  98 lkesiewakeekriFLrqsL 117
                 +++sie+ak+ekriFL++sL
  CCD23358.1 108 CQKSIEFAKNEKRIFLKHSL 127
                 ******************98 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.4
      RPN6_N  41 LgelyrdqkkaeeLae...likesrsflssiaKaKta 74 
                 L + +++ +++  L++   l +++ + l ++aK+K+a
  CCD23358.1 151 LLKEFKKLDDKPSLVDvhlLESKVYHKLRNLAKSKAA 187
                 3333334344433433110233455567777777776 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.6
      RPN6_N  75 KlvrtLldlfskipnslelq 94 
                 K++ +L+d +++i n++ ++
  CCD23358.1 259 KIMLNLIDDVKNILNAKYTK 278
                 77888999999888877655 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       4.8   5.7e+03      27      27 ..      56      56 ..      13      98 .. 0.50
   2 ?   -1.8   0.1       3.8   4.6e+03      14      49 ..     143     177 ..     136     197 .. 0.64
   3 !   60.2   0.0     2e-19   2.4e-16       2     103 ..     288     390 ..     287     392 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.8
                H CS
         PCI 27 e 27
                 
  CCD23358.1 56 V 56
                1 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.8
                 S.HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH CS
         PCI  14 n.lsgfseelkdleeelladdglaqllesLekkvrer 49 
                 + l+  +e+lk++ ++l +++ l + +  Le kv+++
  CCD23358.1 143 DsLKLIDELLKEF-KKLDDKPSLVD-VHLLESKVYHK 177
                 4477777888888.66666666666.45555555543 PP

  == domain 3  score: 60.2 bits;  conditional E-value: 2e-19
                 HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHH.HHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEETTTT CS
         PCI   2 sysdllkalrsgnlsgfseelkdleeelladdglaq.llesLekkvrerllrqvskiyssislerlaklldlsvdevEkilvklIrdgeirakidqesg 99 
                 +++++ +a+++++l +f+++lk++++el++ d+l   + + L++ + e +l++++++++++++++++k+++l  + vE  l+++I d+ +++ +dq +g
  CCD23358.1 288 AMKAVAEAYNNRSLLEFNTALKQYQDELMKSDDLTRsHFSALYDTLLESNLCKIIEPFECVEISHISKMIGLEPQHVEGKLSQMILDKVFYGVLDQGNG 386
                 79999***********************999888877************************************************************** PP

                 EEEE CS
         PCI 100 ivvf 103
                  +++
  CCD23358.1 387 WLYI 390
                 9987 PP

>> RPN6_C_helix  26S proteasome subunit RPN6 C-terminal helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.64   7.6e+02       5      15 ..     141     151 ..     139     151 .. 0.89
   2 !   34.4   0.2   1.1e-11   1.3e-08       1      27 []     396     422 ..     396     422 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.64
  RPN6_C_helix   5 YeaALeTIknm 15 
                   Y+ +L++I+++
    CCD23358.1 141 YQDSLKLIDEL 151
                   99******986 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 1.1e-11
  RPN6_C_helix   1 kDktYeaALeTIknmgkVVDsLYeKAa 27 
                   +D++Y++ALe++++++++ D+LYeKA+
    CCD23358.1 396 QDAAYDSALELVGELNTIIDHLYEKAS 422
                   8*************************7 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.4   1.5e-05     0.018      24      65 ..       4      45 ..       2      54 .. 0.90
   2 ?   -1.5   0.0       2.8   3.4e+03      41      68 ..      60      94 ..      49     105 .. 0.62
   3 !    6.9   0.1    0.0068       8.1      22      57 ..     125     160 ..     123     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.5e-05
      TPR_20 24 arldlAlallaagryeeAleqLleilkrdrkweddaarkqll 65
                a++d A++l++ ++ye+A ++ l+++ +d++ + d++r+++ 
  CCD23358.1  4 AAMDTARKLVEDKQYEKAEQEYLQLINKDLSSNSDKVRNEME 45
                889************************************985 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.8
      TPR_20 41 AleqLleilkrdrkw.......eddaarkqllkif 68
                A ++L e++ r  ++       ++ ++ k+l++ f
  CCD23358.1 60 AKDKLREFIPRSTDYmmqfaksKTAKVLKTLIEKF 94
                66777777777777733333333334444555555 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0068
      TPR_20  22 ldarldlAlallaagryeeAleqLleilkrdrkwed 57 
                 + ++++lA++ +++++y+++l+++ e+lk+ +k +d
  CCD23358.1 125 HSLEIKLATLHYQKKQYQDSLKLIDELLKEFKKLDD 160
                 67889******************9999998777655 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.9   2.3e+03      16      27 ..      15      26 ..       3      31 .. 0.62
   2 !   18.7   0.5   1.4e-06    0.0016       7      75 ..     129     195 ..     124     197 .. 0.92
   3 ?    5.6   0.0     0.016        19      10      36 ..     213     239 ..     204     254 .. 0.78
   4 ?   -3.0   0.0       7.7   9.2e+03      26      26 ..     304     304 ..     291     324 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.9
      TPR_12 16 lgrydeAlelle 27
                 ++y++A++ + 
  CCD23358.1 15 DKQYEKAEQEYL 26
                345555555554 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.4e-06
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                  +la+++++ ++y+++l+l ++ l  +++l  +d+p ++ +    + +y++l ++++  ++l+ a  +a
  CCD23358.1 129 IKLATLHYQKKQYQDSLKLIDELLKEFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKAALTAARTAA 195
                 58****************************..*************************999999887766 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.016
      TPR_12  10 aavlrrlgrydeAlellekaleiarrl 36 
                 + ++++ ++y  A++++ ++ e + +l
  CCD23358.1 213 GILHCEDKDYKTAFSYFYESFESFHNL 239
                 7788999*************9988655 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 7.7
      TPR_12  26 l 26 
                 +
  CCD23358.1 304 F 304
                 2 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   1.8   1.8e-07   0.00022      11     118 ..     128     247 ..     117     325 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.8e-07
      TPR_15  11 alklatllykqgdvkkAlevLkeaaqkaapskdt...........eyWrtladLAwalqqedearkAyrqLla.sgkaraedyerliellydaepkeaa 97 
                  +klatl+y++++++ +l+ ++e +++ ++ +d+           +++  l +LA++     +ar+A++ ++  +   ++ d+ + i++ +d+++k a 
  CCD23358.1 128 EIKLATLHYQKKQYQDSLKLIDELLKEFKKLDDKpslvdvhllesKVYHKLRNLAKSKAALTAARTAANSIYCpTVTMAELDLMSGILHCEDKDYKTAF 226
                 4789************************988888***********9********************999987514455778888888899********* PP

      TPR_15  98 rlaekgwrrfrsprlLssale 118
                  + +++++ f++ +  +s+ +
  CCD23358.1 227 SYFYESFESFHNLNTSTSYGK 247
                 **********98776555544 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.79   9.4e+02       4      24 ..       9      29 ..       6      35 .. 0.80
   2 !   16.0   0.1   1.2e-05     0.015       2      64 ..     130     195 ..     129     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.79
      TPR_16  4 araalragdyddAaaaleaal 24
                ar +++ ++y++A+  + +++
  CCD23358.1  9 ARKLVEDKQYEKAEQEYLQLI 29
                778899999999999998876 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.2e-05
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPd...aaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 +la+++++ ++y+d +++ +++lk +++  d    ++ +ll   ++ ++ +la+  a++ aa +aa
  CCD23358.1 130 KLATLHYQKKQYQDSLKLIDELLKEFKKLDDkpsLVDVHLLESKVYHKLRNLAKSKAALTAARTAA 195
                 79************************98777888*******************9988888886544 PP

>> Rsbr_N  Rsbr N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.7   3.5e-05     0.042      22     121 ..       7     105 ..       1     111 [. 0.87
   2 ?   -2.1   0.0       3.1   3.7e+03       7      25 ..     146     164 ..     138     179 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.5e-05
                 TSSS-.--HHHHHHHHHHHHHHHHH-SS.-SSTTHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHH..T--TT--HHHHHHHHHHHHHHHHHH CS
      Rsbr_N  22 eeslqtisdevyektskefvdlilssveegneeleekleefaerlvqlGwpLkyltkgLqefrkvvlellseeddvvkeeqslelleeieewidpivne 120
                 ++  + ++d+ yek  +e+++li + ++++ +++++++e     l ql ++ +   + L+ef    ++++++  + ++ +  ++l+e++e+  d++ ++
  CCD23358.1   7 DTARKLVEDKQYEKAEQEYLQLINKDLSSNSDKVRNEMESCILELGQLYVSTN-AKDKLREFIPRSTDYMMQFAKSKTAKVLKTLIEKFENIPDSLDDQ 104
                 55667789******************************999999888888865.6788*************9888888888999999999999988888 PP

                 H CS
      Rsbr_N 121 l 121
                 +
  CCD23358.1 105 I 105
                 7 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3.1
                 HHHHHHHHHHHHHHTTSSS CS
      Rsbr_N   7 ellkewlkelkelrkeesl 25 
                 +l++e+lke+k+l ++ sl
  CCD23358.1 146 KLIDELLKEFKKLDDKPSL 164
                 6788888888888777654 PP

>> FRB_dom  FKBP12-rapamycin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7   0.00047      0.57      20      98 ..      70     179 ..      55     180 .. 0.89
   2 ?   -0.8   0.1       1.8   2.1e+03      62      76 ..     299     313 ..     262     337 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00047
     FRB_dom  20 AsrlyfgeknveamlklleplhellekgpetlreasFa...............................qafgreLkeaeewlkkykkteneedlnqaw 87 
                  s+ y+ +   +++ k+l+ l e++e+ p +l+++ F+                               ++++ +Lk  +e+lk++kk  ++ +l ++ 
  CCD23358.1  70 RSTDYMMQFAKSKTAKVLKTLIEKFENIPDSLDDQIFVcqksiefaknekriflkhsleiklatlhyqkKQYQDSLKLIDELLKEFKKLDDKPSLVDVH 168
                 4667888888999************************999999999*******9*9999999999999999****************999999999999 PP

     FRB_dom  88 diyyevfrrik 98 
                  + ++v+++++
  CCD23358.1 169 LLESKVYHKLR 179
                 99999999886 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.8
     FRB_dom  62 reLkeaeewlkkykk 76 
                 r+L e +++lk+y+ 
  CCD23358.1 299 RSLLEFNTALKQYQD 313
                 223333333333322 PP

>> HMW1C_N  HMW1C N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4    0.0001      0.12       9      41 ..      11      44 ..       4     108 .. 0.83
   2 ?   -2.0   0.0       2.4   2.9e+03      23      56 ..      87     120 ..      70     153 .. 0.63
   3 ?   -1.8   0.0         2   2.4e+03      15      39 ..     140     160 ..     124     193 .. 0.54
   4 ?   -2.6   0.0       3.5   4.2e+03       5      39 ..     234     267 ..     232     295 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0001
     HMW1C_N  9 qlvytkqyekAekeLiklLee.ldsnrGrldqie 41
                +lv +kqyekAe+e ++l+++ l sn+ ++ ++ 
  CCD23358.1 11 KLVEDKQYEKAEQEYLQLINKdLSSNSDKVRNEM 44
                79******************99999988887743 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.4
     HMW1C_N  23 LiklLeeldsnrGrldqiefslseqlgleaeees 56 
                 L  l+e++++   +ld+  f ++++++ +++e++
  CCD23358.1  87 LKTLIEKFENIPDSLDDQIFVCQKSIEFAKNEKR 120
                 4455666666666666644555555444444443 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2
     HMW1C_N  15 qyekAekeLiklLeeldsnrGrldq 39 
                 qy    ++ +kl++el +++ +ld+
  CCD23358.1 140 QY----QDSLKLIDELLKEFKKLDD 160
                 33....4444444444444444444 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 3.5
     HMW1C_N   5 eefeqlvytkqyekAekeLi.klLeeldsnrGrldq 39 
                 e+f +l  +  y kA++ L  +lL +++     +d+
  CCD23358.1 234 ESFHNLNTSTSYGKACQVLRyMLLCKIM--LNLIDD 267
                 5666677777788888877413444455..334444 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8   0.00019      0.23     229     308 ..     113     193 ..      49     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
    TPR_MalT 229 elpsdddnhflelel.rnlarvllalgrydeAlellerLlkaaeelgrvrslieiliLqalalqaqgreeeAlaaLeqALe 308
                 e  ++++  fl+  l + la +++   +y++ l+l+++Llk+ ++l    sl+++++L + +++ + +  ++ aaL+ A +
  CCD23358.1 113 EFAKNEKRIFLKHSLeIKLATLHYQKKQYQDSLKLIDELLKEFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKAALTAART 193
                 666677777777777355************************************************999999999998855 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.4     0.042        50      12      30 ..      13      31 ..       4      33 .. 0.83
   2 ?    9.9   0.3   0.00072      0.86       6      31 ..     130     155 ..     129     158 .. 0.90
   3 ?    3.9   0.1     0.059        70       3      27 ..     167     191 ..     165     195 .. 0.87
   4 ?   -2.6   0.0       7.1   8.5e+03       8      24 ..     213     229 ..     213     229 .. 0.78
   5 ?   -1.7   0.1       3.6   4.3e+03       2      12 ..     294     304 ..     293     313 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.042
       TPR_2 12 yklgdyeeAleafekAlel 30
                 + ++ye+A++ + + +  
  CCD23358.1 13 VEDKQYEKAEQEYLQLINK 31
                5679**********99865 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00072
       TPR_2   6 nlGlayyklgdyeeAleafekAleld 31 
                  l+ ++y++++y++ l++ ++ l+  
  CCD23358.1 130 KLATLHYQKKQYQDSLKLIDELLKEF 155
                 5899*******************976 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.059
       TPR_2   3 alynlGlayyklgdyeeAleafekA 27 
                 ++    ++y kl ++++ ++a+ +A
  CCD23358.1 167 VHLLESKVYHKLRNLAKSKAALTAA 191
                 6778899**************9988 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 7.1
       TPR_2   8 GlayyklgdyeeAleaf 24 
                 G ++ + +dy+ A  +f
  CCD23358.1 213 GILHCEDKDYKTAFSYF 229
                 66788889999998776 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 3.6
       TPR_2   2 ealynlGlayy 12 
                 ea++n+ l+ +
  CCD23358.1 294 EAYNNRSLLEF 304
                 55555554433 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.3      0.12   1.5e+02      27      55 ..       4      32 ..       1      38 [. 0.82
   2 ?    0.5   0.2      0.74   8.8e+02       3      55 ..      14      32 ..      12      63 .. 0.51
   3 ?    7.0   0.1    0.0068       8.1      25      57 ..     127     157 ..     123     162 .. 0.86
   4 ?    2.0   0.0      0.26   3.1e+02      18      53 ..     158     193 ..     155     201 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.12
      TPR_19 27 arllLAeallalgqldeAealLdalpeed 55
                a+++ A+ l++ +q+++Ae+   +l ++d
  CCD23358.1  4 AAMDTARKLVEDKQYEKAEQEYLQLINKD 32
                677789999**********9988887765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.74
      TPR_19  3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeed 55
                +++                                  q+++Ae+   +l ++d
  CCD23358.1 14 EDK----------------------------------QYEKAEQEYLQLINKD 32
                444..................................4444444444443333 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0068
      TPR_19  25 aearllLAeallalgqldeAealLdalpeedpd 57 
                 +e++l  A ++++ +q+++  +l+d+l++e+++
  CCD23358.1 127 LEIKL--ATLHYQKKQYQDSLKLIDELLKEFKK 157
                 55555..**********************9886 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.26
      TPR_19  18 lqedpknaearllLAeallalgqldeAealLdalpe 53 
                 l+++p   ++ ll  +++ +l +l++ +a+L a+  
  CCD23358.1 158 LDDKPSLVDVHLLESKVYHKLRNLAKSKAALTAART 193
                 677888889999889****************98865 PP

>> DUF4606  Domain of unknown function (DUF4606)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.7    0.0012       1.5      54      96 ..     124     165 ..      85     172 .. 0.75
   2 ?   -1.2   0.0       2.1   2.5e+03      38      62 ..     315     339 ..     289     342 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0012
     DUF4606  54 ktllesallkekleehlytkdsltligeihrslPrlsddpkei 96 
                 k+ le +l   +++++ y +dsl li+e+++++ +l d p+ +
  CCD23358.1 124 KHSLEIKLATLHYQKKQY-QDSLKLIDELLKEFKKLDDKPSLV 165
                 445666666667776666.59*******************876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 2.1
     DUF4606  38 qkkkaelaqkaFlrqkktllesall 62 
                   k ++l++++F     tlles+l 
  CCD23358.1 315 LMKSDDLTRSHFSALYDTLLESNLC 339
                 4466677777777777777777765 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.2   0.00067       0.8      19      89 ..      26      97 ..      17     104 .. 0.85
   2 ?    0.6   0.2      0.62   7.4e+02      40      64 ..     139     163 ..     126     187 .. 0.68
   3 ?    0.6   0.0      0.62   7.4e+02      77      89 ..     302     314 ..     260     325 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00067
  Syntaxin_2 19 vkqLgtk..kdteelreklhelieeinelikktnellkklsqldnsssdsqqklqkekLkkdfkealqeFqki 89
                ++ ++++   +++++r++++++i e+ +l   tn++  kl + +  s d++  ++k+k +k +k+++++F++i
  CCD23358.1 26 LQLINKDlsSNSDKVRNEMESCILELGQLYVSTNAK-DKLREFIPRSTDYMMQFAKSKTAKVLKTLIEKFENI 97
                4555554445689**********************9.7888888888899********************997 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.62
  Syntaxin_2  40 eeinelikktnellkklsqldnsss 64 
                 ++ ++ +k + ellk++++ld++ s
  CCD23358.1 139 KQYQDSLKLIDELLKEFKKLDDKPS 163
                 4556666777777777777777654 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.62
  Syntaxin_2  77 kdfkealqeFqki 89 
                  +f++al+++q  
  CCD23358.1 302 LEFNTALKQYQDE 314
                 4788888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1514  (0.0844442); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3144.52
//
Query:       CCD23359.1  [L=483]
Description: hypothetical protein NDAI_0B03240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-46  159.2   0.0    1.6e-46  158.8   0.0    1.1  1  UDPGP         UTP--glucose-1-phosphate uridylyltransferase
  ------ inclusion threshold ------
        0.2   12.0   0.0       0.37   11.1   0.0    1.6  1  NTP_transf_3  MobA-like NTP transferase domain


Domain annotation for each model (and alignments):
>> UDPGP  UTP--glucose-1-phosphate uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.8   0.0   1.8e-50   1.6e-46      19     337 ..      79     416 ..      69     459 .. 0.88

  Alignments for each domain:
  == domain 1  score: 158.8 bits;  conditional E-value: 1.8e-50
       UDPGP  19 ekidwdkieplpeeevvdyedlkekeeekkellnklavlkLnGglGtsmGckgpKslieVr..dgktfLdlivqqieelnkkynvd..vPlvlmnSfnT 113
                 e+i  +k +p++++++ +y++l   +++++     +av+ ++Gg+Gt++G + pK+ ++V   ++k+++++++++i++l++ +n++  +P+ +m+S  T
  CCD23359.1  79 ESIINAKNDPIESHALATYRQL--GHHAIE--KGEVAVILMAGGQGTRLGSNEPKGCYDVGlpSHKSLFQMQAEKIHTLQRITNSKrpIPWFIMTSEPT 173
                 5667788899999999999999..333333..3579*************************99**************99987665434*********** PP

       UDPGP 114 dedtekilk..kykk.kkvdiltfnqsryPriskesllpvekkakkeekeewyPpGhGdlyesLknsglldkllaeGkeyiFvsniDN.lgatvDlkil 208
                   +te+++    y++ +++++ +fnq+ +P+++++    + k++    +    P+G+G+ly+ Lk+ g++dkl++   ++++v+++DN l +++D+ ++
  CCD23359.1 174 RMMTERFFDkhGYFGlTREQVQFFNQGTLPALDSNGEKLLLKDKV---HLVQSPDGNGGLYQGLKENGIIDKLIQLNVKHVYVYCVDNiLSKIADPVFI 269
                 ********955688899*****************99877766653...47889********************************************** PP

       UDPGP 209 nllvekkaeflmevtektradvkgGtlieyegklrlleiaqvpkehveefksvkkfkifntnni...winlkalkrlvee..kelkleiivnk.ktld. 300
                 ++ ++++ + + + ++k  + + +G +++ ++k  ++e++++ ke  e+  s      + ++ni   + +++ l++ +++  + l  +i+++k  ++d 
  CCD23359.1 270 GFAIKHGFQLATKAVRKRDPHESVGLIATRDDKPCVIEYSEISKELAEDIDSN-GLLRLRAGNIvnhYYSVDLLRKSLNSwcDMLPYHIAKKKiPYFDn 367
                 ******************************************88887777775.5555555555577***********88889999*****99999994 PP

       UDPGP 301 egekviql.etavgaaiksF..........kkavginVpR.srflpvkt 337
                 ++ ++++  ++++g+++++F          +k+ +++V+R  +f p+k+
  CCD23359.1 368 DSMELMKPgDKSNGIKLEQFifdvfpnvplEKFGCLEVERsIEFAPLKN 416
                 445566654899****************************67******8 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.1e-05      0.37       1      37 [.     112     153 ..     111     236 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.1e-05
                   EEEEEESS-TTTTT..THHHHCC...CCCCHHHHHHHHHCTT CS
  NTP_transf_3   1 aviLAGGrSsRmgg..dKallpl...ggkpllervldalraa 37 
                   ++++AGG+++R+g+  +K  +++     k+l++ ++++++ +
    CCD23359.1 112 VILMAGGQGTRLGSnePKGCYDVglpSHKSLFQMQAEKIHTL 153
                   4788*********8889*999996666777777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3636.94
//
Query:       CCD23360.1  [L=839]
Description: hypothetical protein NDAI_0B03260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-06   26.1   3.5    1.1e-05   25.1   3.5    1.6  1  LisH           LisH


Domain annotation for each model (and alignments):
>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   3.5   6.4e-10   1.1e-05       1      27 []     121     147 ..     121     147 .. 0.97

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 6.4e-10
                 HHHHHHHHHHHHHCT-HHHHHHHHHHT CS
        LisH   1 eeLNrLIydYLvkeGyeetAeaFekEa 27 
                 ++L+++Iy+YL+++ y e+A+ F+kEa
  CCD23360.1 121 QLLYAHIYNYLLEMRYYEAASQFLKEA 147
                 78************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4120  (0.229795); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                       222  (0.0123822); expected 17.9 (0.001)
Passed Fwd filter:                       101  (0.00563333); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.62u 0.41s 00:00:03.03 Elapsed: 00:00:00.77
# Mc/sec: 3295.49
//
Query:       CCD23361.1  [L=416]
Description: hypothetical protein NDAI_0B03270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.1e-58  196.1   0.0    1.1e-57  195.8   0.0    1.0  1  Peptidase_M22  Glycoprotease family
  ------ inclusion threshold ------
       0.16   11.5   0.0       0.24   10.9   0.0    1.2  1  BcrAD_BadFG    BadF/BadG/BcrA/BcrD ATPase family


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.8   0.0   1.2e-61   1.1e-57      14     271 .]      83     373 ..      72     373 .. 0.89

  Alignments for each domain:
  == domain 1  score: 195.8 bits;  conditional E-value: 1.2e-61
                    ....SSSSHHHHHHHHHHHHHHHHHHHHHHHTSTGGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHHHHCCHCT..SEC...S CS
  Peptidase_M22  14 hakyGGvvPelasraHserllplieealaeaglsledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleahalaarle..eke...e 104
                     ++ GG++P++a+++H+  +  li e l+    + e++d I+ t+gPG++++L  G++++kgl+la+n+  +      +h+l +r+   e +   +
     CCD23361.1  83 SKSDGGIIPTKAQEHHQSSISDLISESLTYLPAN-EKIDLICTTRGPGMMGSLSTGLTMGKGLSLAWNIRWLVFIIFWVHLLIPRMFadE-DdelD 176
                    3467**************************9999.56*********************************88888899999999999642.3579* PP

                    SC.EEEEESSSTEEEEEECT.TEEEEEEEESSSEHHHHHHHHHHHHT..SS.CCHHHHHHHCTC....S...........EET...TEEE.CHHHH CS
  Peptidase_M22 105 fP.vvllvsGghtqvylvke.gryeilgetlddaagealdkvarllglpyp.ggpkieklakeg....kk....iefprplkg...ldfsfsGlkt 186
                    fP ++l+vsGght ++++++  ++eil +tld+a+g++ldk++r +g++ +  g+++ekl k+     kk    + +p plk    + fsf+   t
     CCD23361.1 177 FPfISLIVSGGHTCLIYSESvLKHEILVDTLDIALGDSLDKCGREIGINGNmIGKEMEKLTKSYtidkKKndqrMILPNPLKRtneFAFSFAPFLT 272
                    ***********************************************998536669999999777764224545669****99*9*99******** PP

                    HHHHHHST.T..........HHHHHHHHHHHHHHHHHHHHHHHHHH.....CTBSEEEEESGGGGXHHHHHCHCCHHHHTTSEEEXXXHHHHSSXC CS
  Peptidase_M22 187 avlkelek.e..........vedlaasfqeavvdhlvekteralkl.....pkakelvilGGvaankrLrealeeeaeelglkliiPplkyctdna 266
                    av + l++ +          ++++a+++qea++dhl  + ++++       +++k+++++GGv+an+rLr +l++  +e+  ++++Ppl+yctdna
     CCD23361.1 273 AVKTHLSSnNidpkdvaidvQKEMAYEIQEAIFDHLLLRIKKYMIInhkrfKHVKNFICSGGVSANSRLRIKLNNGLNEFFKNFHYPPLEYCTDNA 368
                    ******443356889**************************99866779999**********************98888769************** PP

                    HHHHH CS
  Peptidase_M22 267 amiaw 271
                     mi+w
     CCD23361.1 369 LMIGW 373
                    ***98 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.7e-05      0.24     189     242 ..     299     351 ..     288     359 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.7e-05
                  --HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....H CS
  BcrAD_BadFG 189 ekaedIlaglhraialrvialisrsggvtdevtltGGvakneaavkelrklvke 242
                  e++e+I++ l   i++++i  ++r++ v++ +++ GGv+ n+ +  +l++ ++e
   CCD23361.1 299 EIQEAIFDHLLLRIKKYMIINHKRFKHVKN-FICSGGVSANSRLRIKLNNGLNE 351
                  7899************************65.***********999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.50
# Mc/sec: 2509.19
//
Query:       CCD23362.1  [L=444]
Description: hypothetical protein NDAI_0B03280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-29  102.6   1.8      1e-29  102.6   1.8    2.3  3  Nse4_C         Nse4 C-terminal
    1.5e-14   53.8   0.2    1.5e-14   53.8   0.2    2.6  3  Nse4-Nse3_bdg  Binding domain of Nse4/EID3 to Nse3-MAGE


Domain annotation for each model (and alignments):
>> Nse4_C  Nse4 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.6   1.4e+04      48      49 ..      47      48 ..      18      65 .. 0.50
   2 ?   -2.2   0.1      0.59   5.3e+03      48      69 ..     212     234 ..     191     242 .. 0.47
   3 !  102.6   1.8   1.1e-33     1e-29       2      90 ..     341     438 ..     340     439 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.6
      Nse4_C 48 te 49
                t+
  CCD23362.1 47 TK 48
                22 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.59
      Nse4_C  48 teeeeeekake.eeakkkqavls 69 
                  e+e+++ a++ +++k  q v++
  CCD23362.1 212 DENEDNDGANTrNNNKLRQNVMK 234
                 22222222222244445555554 PP

  == domain 3  score: 102.6 bits;  conditional E-value: 1.1e-33
      Nse4_C   2 islfkfvinpksFaqtVeNlFylSfLvkdgkvkielde.dglpvl........eeteeeeeekakeeeakkkqavlsldmetWkelieafdikeplip 90 
                 i+lf+f+i+p+sF +tVeNlFy+SfL+k+g++++ ++e dg+p +        ++++++e ek+k+ +++++++++++dm tWk+lie+f+i+e++ip
  CCD23362.1 341 INLFEFIIDPNSFCRTVENLFYTSFLIKEGRLELIENEsDGFPSIrikenvrsNDSANNEIEKQKRLNKHQNHIIFQIDMPTWKKLIEKFSITESFIP 438
                 9********************************9888779*****9888776546888888888888999***************************8 PP

>> Nse4-Nse3_bdg  Binding domain of Nse4/EID3 to Nse3-MAGE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.24   2.1e+03      45      54 ..      65      77 ..      41      79 .. 0.61
   2 !   53.8   0.2   1.7e-18   1.5e-14       1      54 [.     143     199 ..     143     219 .. 0.85
   3 ?   -3.0   0.1      0.93   8.4e+03      20      32 ..     335     347 ..     328     353 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.24
  Nse4-Nse3_bdg 45 e...gageeeddd 54
                   +   ++ +++dd+
     CCD23362.1 65 KlldNDTNDDDDA 77
                   2443333444444 PP

  == domain 2  score: 53.8 bits;  conditional E-value: 1.7e-18
  Nse4-Nse3_bdg   1 DSrlLvsaSelaaekarnlklg..gggfDvdeFvsklktfMggdrfe.gageeeddd 54 
                    D+++ v++Sela++++rnlk+g  ++ ++ d++ + +k++M++++f+ ++  ee+++
     CCD23362.1 143 DAKAIVNISELAQISVRNLKFGdtRSLINIDDITNYFKRYMLKEYFKlNRIKEEESS 199
                    9**********************************************9444444433 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.93
  Nse4-Nse3_bdg  20 klggggfDvdeFv 32 
                    + + +++++ eF+
     CCD23362.1 335 NNNNNSINLFEFI 347
                    4457899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1200  (0.0669307); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3396.60
//
Query:       CCD23363.1  [L=595]
Description: hypothetical protein NDAI_0B03290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-16   59.4   4.1    4.3e-16   58.5   4.1    1.5  1  Homeodomain    Homeodomain
     0.0044   16.9   0.9      0.012   15.5   0.9    1.8  1  Homeobox_KN    Homeobox KN domain
     0.0044   16.9  10.8     0.0044   16.9  10.8    4.3  4  TLP-20         Nucleopolyhedrovirus telokin-like protein-20 (
  ------ inclusion threshold ------
      0.089   13.5   1.0       0.22   12.2   1.0    1.6  1  HOCHOB         Homeobox-cysteine loop-homeobox


Domain annotation for each model (and alignments):
>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   4.1   9.6e-20   4.3e-16       1      57 []      96     152 ..      96     152 .. 0.97

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 9.6e-20
                  ST-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Homeodomain   1 rrkRttftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk 57 
                  + kR + + e l++L+++F +n+ ps +er+ ++k ++++e++V++WFqNrRak kk
   CCD23363.1  96 KTKRKRAKGETLNILKQYFDQNPIPSLQERKNISKLTNMPEKNVRIWFQNRRAKLKK 152
                  6799***************************************************98 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.9   2.7e-06     0.012       7      39 ..     116     148 ..     115     149 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.7e-06
  Homeobox_KN   7 hnPYPseedKeeLlkeTglsvkqitnWFINaRr 39 
                  +nP Ps ++++ + k T++  k +  WF N R+
   CCD23363.1 116 QNPIPSLQERKNISKLTNMPEKNVRIWFQNRRA 148
                  59****************************996 PP

>> TLP-20  Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   7.9      0.61   2.7e+03      91     161 ..      31     100 ..       7     119 .. 0.48
   2 !   16.9  10.8   9.9e-07    0.0044      84     154 ..     139     208 ..     121     220 .. 0.78
   3 !    4.5   0.2    0.0067        30     109     151 ..     428     469 ..     302     491 .. 0.75
   4 !    6.4   4.4    0.0017       7.7     100     165 ..     507     577 ..     499     581 .. 0.42

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.61
      TLP-20  91 kptvlkkgsviFkivytnkksansklflsapveksssededdedd..ededeaakiesnsdseesepssaKkq 161
                 +++ ++ ++++ +  +t + ++n++ + s+ ++++++++  d+      ++++++++ n    + ++++ K++
  CCD23363.1  31 NEFMVNNNNNLDNFDFTINTNTNTNTNTSVTTTTNTNDNIIDDSAsnITTNTNTTPNTN---TNTNATKTKRK 100
                 45555555555444444433444444444444333333333333322333333333333...22333333332 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 9.9e-07
      TLP-20  84 nviLfnikptvlkkgsviFkivytnkksansklflsapveksssededdeddededeaakiesnsdseese 154
                   i f   + +lkk+++i +i+ ++++++ns+++++   +++++e+++ +dd  +d++++ +snsd + ++
  CCD23363.1 139 VRIWFQNRRAKLKKNGTILNIKKQQQQHSNSQKNKNNNNNNNNNENSSYSDD-SNDNNSESNSNSDGSADA 208
                 458899999****************************997777777777777.566666666664444443 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0067
      TLP-20 109 kksansklflsapv...eksssededdeddededeaakiesnsdse 151
                 +++  s+ ++++ +   +++s+++ +d+++  ++++++i ++  ++
  CCD23363.1 428 QSHLPSQSQAQSQQlqlHSHSQQHYQDNNN--NNHNNHIPHD--TN 469
                 445555555555555333333333333333..3333333322..11 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0017
      TLP-20 100 viFkivytnkksansklflsapv.....eksssededdeddededeaakiesnsdseesepssaKkqklDe 165
                 ++F++ ++++  +    ++++ +     ++ ++e++++++++++d++++ ++n++++   ++s+ +  lD+
  CCD23363.1 507 ALFSLLLDDQGTTSGAGAVTTDThnnnnNTTNQETNSNDNENKNDNSNNNNNNNNNNAGMEPSILPTDLDN 577
                 56666676633333333333332333221112222222222233333333333445555566665666665 PP

>> HOCHOB  Homeobox-cysteine loop-homeobox
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.0   4.9e-05      0.22       3      70 ..     112     179 ..     111     191 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.9e-05
      HOCHOB   3 elfeknrHPsiqemikiseetgvkYeqvfkRfselRllkkekCeknDtCekvakyfeskekydgllde 70 
                 ++f++n  Ps+qe  +is+ t++  ++v   f++ R+  k++ +  +  ++ +++++s+++ +++ ++
  CCD23363.1 112 QYFDQNPIPSLQERKNISKLTNMPEKNVRIWFQNRRAKLKKNGTILNIKKQQQQHSNSQKNKNNNNNN 179
                 8***********************************99988877766666666666666555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2908  (0.162195); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                       109  (0.00607954); expected 17.9 (0.001)
Passed Fwd filter:                        65  (0.00362541); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.13u 0.29s 00:00:01.42 Elapsed: 00:00:00.44
# Mc/sec: 4085.79
//
Query:       CCD23364.1  [L=382]
Description: hypothetical protein NDAI_0B03300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-07   30.7   8.0     0.0061   16.6   0.3    5.7  6  TPR_2     Tetratricopeptide repeat
    6.2e-06   26.4   0.1      0.037   14.3   0.0    3.6  3  TPR_12    Tetratricopeptide repeat
     0.0059   16.4  10.9       0.29   11.0   0.8    4.8  5  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.014   16.1   3.5        3.8    8.3   0.0    4.4  5  Sel1      Sel1 repeat
       0.18   12.1  15.3       0.31   11.4   0.5    5.4  6  TPR_8     Tetratricopeptide repeat
       0.69   10.2   4.3        3.9    7.8   0.1    3.5  4  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.31   9.2e+02      14      30 ..     170     186 ..     168     188 .. 0.88
   2 !    5.4   0.0    0.0076        23       4      29 ..     192     217 ..     189     218 .. 0.86
   3 !   16.6   0.3     2e-06    0.0061       3      31 ..     236     264 ..     234     266 .. 0.93
   4 ?    1.9   0.1       0.1     3e+02       2      13 ..     271     282 ..     270     284 .. 0.84
   5 !    5.5   0.0     0.007        21      15      30 ..     316     331 ..     314     333 .. 0.84
   6 ?   -2.8   0.0       3.2   9.6e+03       8      17 ..     354     363 ..     343     373 .. 0.60

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.31
       TPR_2  14 lgdyeeAleafekAlel 30 
                  gd + A+++ ++ le+
  CCD23364.1 170 DGDVKNAKKLVKELLEI 186
                 6999***********98 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0076
       TPR_2   4 lynlGlayyklgdyeeAleafekAle 29 
                 l n G+++  + d +eA+++++k l+
  CCD23364.1 192 LKNVGDLCVVRHDNNEAKRYYNKFLQ 217
                 678899999999**********9876 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 2e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 ++  lG++ y+ g++ +A+e++ k+++++
  CCD23364.1 236 VYEKLGEIEYQEGNFLKAEEYWLKCIKIC 264
                 6889**********************997 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.1
       TPR_2   2 ealynlGlayyk 13 
                 + +++lG++y++
  CCD23364.1 271 KSYFYLGKIYLN 282
                 579*******97 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.007
       TPR_2  15 gdyeeAleafekAlel 30 
                 ++y++A+e+f+   el
  CCD23364.1 316 KNYDKAIEWFKLGMEL 331
                 79********977666 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 3.2
       TPR_2   8 Glayyklgdy 17 
                  +++  l+++
  CCD23364.1 354 SNCLKSLKRF 363
                 4555555555 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.016        49      30      71 ..     177     215 ..     172     225 .. 0.78
   2 !   14.3   0.0   1.2e-05     0.037       4      37 ..     235     267 ..     232     282 .. 0.81
   3 ?    3.5   0.0      0.03        90      58      73 ..     315     330 ..     302     334 .. 0.56

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.016
      TPR_12  30 leiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                   ++++ll+ +hpl   tl n g+l+  + +  eA +++++ 
  CCD23364.1 177 KKLVKELLEIEHPL---TLKNVGDLCVVRHDNNEAKRYYNKF 215
                 56677777888877...5999999997777999999999875 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.2e-05
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrll 37 
                 +++ +l++++++ g++ +A+e+  k++ i+ +l 
  CCD23364.1 235 QVYEKLGEIEYQEGNFLKAEEYWLKCIKIC-KLE 267
                 57889************************9.453 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.03
      TPR_12  58 lgryeeAlelleeala 73 
                 +++y++A+e+++  ++
  CCD23364.1 315 FKNYDKAIEWFKLGME 330
                 4455555555554444 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.058   1.7e+02       3      26 ..     191     214 ..     189     217 .. 0.86
   2 !   11.0   0.8   9.7e-05      0.29       4      31 ..     237     264 ..     234     265 .. 0.90
   3 ?    0.3   0.1      0.24   7.1e+02       2      13 ..     271     282 ..     271     284 .. 0.82
   4 !    5.8   0.1    0.0045        13      15      25 ..     316     326 ..     314     332 .. 0.84
   5 ?   -3.4   0.0       3.4     1e+04       9      18 ..     355     364 ..     355     364 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.058
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyek 26 
                 +l+n G ++    + +eA  yy+k
  CCD23364.1 191 TLKNVGDLCVVRHDNNEAKRYYNK 214
                 678889999999999*******98 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9.7e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALeln 31 
                 +  lG + ++ g++ +A+ey  k+++++
  CCD23364.1 237 YEKLGEIEYQEGNFLKAEEYWLKCIKIC 264
                 5579*********************995 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfk 13 
                 k+++ lG +y++
  CCD23364.1 271 KSYFYLGKIYLN 282
                 579999999986 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0045
                 T-HHHHHHHHH CS
       TPR_1  15 gkydeAleyye 25 
                 ++yd+A+e ++
  CCD23364.1 316 KNYDKAIEWFK 326
                 79*******98 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 3.4
                 HHHHHTT-HH CS
       TPR_1   9 nayfklgkyd 18 
                 n++ +l++++
  CCD23364.1 355 NCLKSLKRFE 364
                 7999999997 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.068     2e+02      29      38 .]     140     149 ..     139     149 .. 0.90
   2 ?    1.6   0.0      0.16   4.9e+02      19      32 ..     201     214 ..     195     215 .. 0.77
   3 ?   -2.2   0.1       2.6   7.8e+03      22      32 ..     249     259 ..     237     259 .. 0.67
   4 ?   -0.7   0.0      0.89   2.6e+03       3      16 ..     272     283 ..     271     290 .. 0.80
   5 ?    8.3   0.0    0.0013       3.8      19      32 ..     314     327 ..     304     331 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.068
        Sel1  29 wyekAAeqGd 38 
                 ++e+AAe+Gd
  CCD23364.1 140 LLERAAELGD 149
                 69*******7 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.16
        Sel1  19 vpkDpekAiewyek 32 
                 v  D ++A ++y k
  CCD23364.1 201 VRHDNNEAKRYYNK 214
                 555*********87 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.6
        Sel1  22 DpekAiewyek 32 
                 +  kA+e++ k
  CCD23364.1 249 NFLKAEEYWLK 259
                 66678888765 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.89
        Sel1   3 AmyrLGmfylylnG 16 
                 +++ LG   +yln 
  CCD23364.1 272 SYFYLG--KIYLNS 283
                 7899**..888986 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0013
        Sel1  19 vpkDpekAiewyek 32 
                   k+++kAiew+++
  CCD23364.1 314 YFKNYDKAIEWFKL 327
                 579*********86 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.24   7.1e+02      14      30 ..     170     186 ..     168     187 .. 0.88
   2 ?    2.2   0.1      0.09   2.7e+02      16      28 ..     204     216 ..     203     217 .. 0.86
   3 ?   11.4   0.5    0.0001      0.31       2      31 ..     235     264 ..     232     265 .. 0.94
   4 ?   -1.3   0.1       1.2   3.6e+03       3      13 ..     272     282 ..     271     284 .. 0.80
   5 ?    3.9   0.0     0.026        77      15      29 ..     316     330 ..     314     332 .. 0.84
   6 ?   -3.2   0.0         5   1.5e+04      10      19 ..     356     365 ..     354     374 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.24
                 TT-HHHHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekalel 30 
                  gd ++Ak+  ++ le+
  CCD23364.1 170 DGDVKNAKKLVKELLEI 186
                 5999*********9998 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.09
                 -HHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekal 28 
                 d +eAk yy+k l
  CCD23364.1 204 DNNEAKRYYNKFL 216
                 679*******976 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.0001
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleld 31 
                 ++y +lg i  + g++ +A+ey  k++++ 
  CCD23364.1 235 QVYEKLGEIEYQEGNFLKAEEYWLKCIKIC 264
                 6899************************95 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.2
                 HHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylk 13 
                 +y+ lg+iyl+
  CCD23364.1 272 SYFYLGKIYLN 282
                 78889999987 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.026
                 T-HHHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekale 29 
                 ++y++A+e+++   e
  CCD23364.1 316 KNYDKAIEWFKLGME 330
                 79********97666 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 5
                 HHHHTT-HHH CS
       TPR_8  10 iylklgdyee 19 
                 ++++l+++e+
  CCD23364.1 356 CLKSLKRFES 365
                 6788888886 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.89   2.7e+03      36      75 ..     170     208 ..     169     215 .. 0.72
   2 ?    0.7   0.1      0.21   6.2e+02      20      38 ..     224     242 ..     202     269 .. 0.64
   3 ?   -0.1   0.2      0.37   1.1e+03      34      66 ..     264     296 ..     252     301 .. 0.68
   4 ?    7.8   0.1    0.0013       3.9      37      80 ..     316     358 ..     315     360 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.89
                 TT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHH CS
      ANAPC3  36 ngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeA 75 
                 +g+ k A +l++++ l+ +++  +   +  ++  +  +eA
  CCD23364.1 170 DGDVKNAKKLVKEL-LEIEHPLTLKNVGDLCVVRHDNNEA 208
                 68999999999999.7778877777777766666666666 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.21
                 H--HHHHHHHHHHHHHTT- CS
      ANAPC3  20 tespedayllAlclylngq 38 
                  +++++++l ++++ ++g+
  CCD23364.1 224 DDNNSNVLLIGQVYEKLGE 242
                 3344445555666666665 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.37
                 HHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHH CS
      ANAPC3  34 ylngqykrAyellrkaklnskslgcrylfAqcl 66 
                 +++++ ++ y +l k  lns+ l++ +lf  c+
  CCD23364.1 264 CKLEDCNKSYFYLGKIYLNSEPLKSKVLFENCA 296
                 666677777777777777777777777776665 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0013
                 T-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  37 gqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 ++y++A+e+++    +  +++c + f q+++ Lkk+  + ++L+
  CCD23364.1 316 KNYDKAIEWFKLG-MELFDIQCFFGFFQSCYHLKKWGACSNCLK 358
                 5799999998877.555788****************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2881.80
//
Query:       CCD23365.1  [L=313]
Description: hypothetical protein NDAI_0B03310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-73  246.4   0.0    3.4e-73  246.3   0.0    1.0  1  Pkinase      Protein kinase domain
      7e-32  110.7   0.0    1.9e-31  109.3   0.0    1.6  2  Pkinase_Tyr  Protein tyrosine kinase
    0.00073   19.5   0.1    0.00099   19.1   0.1    1.2  1  APH          Phosphotransferase enzyme family
     0.0023   17.3   0.1     0.0077   15.6   0.0    1.9  2  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.3   0.0   7.6e-77   3.4e-73       1     264 []      14     297 ..      14     297 .. 0.97

  Alignments for each domain:
  == domain 1  score: 246.3 bits;  conditional E-value: 7.6e-77
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS.--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgs.lsee 98 
                 y+k++k+GeG++++Vy +++++tg+++AvK+ik+++ k+  + +++rE+k+l++++h+n+++l+++f   d+l lvle+++++ l+ ++++k++ ++++
  CCD23365.1  14 YTKEKKVGEGTYAVVYLGTKQSTGRQIAVKEIKTSEFKDGLDMSAIREVKYLQEMQHDNVIELIDIFMAYDNLNLVLEFLPTD-LEVIIKDKSIlFTPA 111
                 7899*****************************************************************************76.*****966666**** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS- CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkp 195
                 ++k+++  +l+g++++H++ i+HrDlKp+N+L++ +g +K++DFGla+ +   ++ lts v+t++Y+APE+l ++++y++++D+Ws+Gvi++el+ + p
  CCD23365.1 112 DIKSWMLMTLRGVHHCHRNFILHRDLKPNNLLVSPDGIIKVADFGLARAIPAPHEnLTSNVVTRWYRAPELLfGARHYTSAIDIWSVGVIFAELMLRIP 210
                 **************************************************998888****************999************************ PP

                 STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS........................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 196 pfsgekgkekvekeldqlekilkilg.etkeklpeasei........................seeakdllkkllkkdpkkRltaeellqhpyl 264
                  ++   g++    ++dq+e +++ lg +t++++pe s++                        se+a+++++ +l+++p kR++a e+l+++y+
  CCD23365.1 211 YLP---GQN----DVDQMEVTFRALGtPTDKDWPEVSSFnsynklqiypppstfelrkrfiaaSENALKFMSGMLTMNPVKRWSAIECLESEYF 297
                 ***...554....89999999999998999**************************************************************98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.3   0.0   4.3e-35   1.9e-31       3     200 ..      16     207 ..      14     234 .. 0.90
   2 ?   -1.5   0.0      0.26   1.2e+03     170     183 ..     285     298 ..     266     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: 109.3 bits;  conditional E-value: 4.3e-35
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                   +kk+GeG+++ V+ gt +    ++  ++avK +k +  ++    + ++e+k +++++h+n+++l+ + +  ++l +v+e+++  dL+  +++k +  
   CCD23365.1  16 KEKKVGEGTYAVVYLGTKQ----STGRQIAVKEIKTSEFKDGlDMSAIREVKYLQEMQHDNVIELIDIFMAYDNLNLVLEFLPT-DLEVIIKDK-SIL 107
                  5799************999....9999*******87766665478899**********************************96.9*******9.9** PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS.-HHHHHHSE.EEHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWm.apEslkekk.ftsksDvWsfGvll 195
                  +t  d+ s++l   +G+++ +++ ++Hrdl   N L+s + ++k++DfGLar+i      +++ ++++  +W+ apE l+  + +ts+ D+Ws Gv+ 
   CCD23365.1 108 FTPADIKSWMLMTLRGVHHCHRNFILHRDLKPNNLLVSPDGIIKVADFGLARAI---PAPHENLTSNVVTRWYrAPELLFGARhYTSAIDIWSVGVIF 202
                  ******************************************************...66677777888899988****997655************** PP

                  HHHHT CS
  Pkinase_Tyr 196 wEift 200
                   E++ 
   CCD23365.1 203 AELML 207
                  **997 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.26
                  GGS-HHHHHHSEEE CS
  Pkinase_Tyr 170 kWmapEslkekkft 183
                  +W a+E+l+++ f+
   CCD23365.1 285 RWSAIECLESEYFQ 298
                  6******9998776 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   2.2e-07   0.00099     164     201 ..     128     163 ..      66     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.2e-07
                 S-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEEC CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfedaglgpp 201
                  +  +lH+Dl+p+Nllv   ++ ++ v Df++a++ p+
  CCD23365.1 128 HRNFILHRDLKPNNLLVS--PDGIIKVADFGLARAIPA 163
                 567799************..777778********9986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.16   7.2e+02      18      56 ..      18      56 ..      12      66 .. 0.76
   2 !   15.6   0.0   1.7e-06    0.0077      88     241 ..      55     202 ..      48     270 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.16
  Kinase-like 18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdl 56
                 + +++g   vv++ + q tg ++avk   + +     d+
   CCD23365.1 18 KKVGEGTYAVVYLGTKQSTGRQIAVKEIKTSEFKDGLDM 56
                 55678888999**************99888775555555 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.7e-06
  Kinase-like  88 dlvkiqkkkpfiqlkskesiywvvnallllpaasvdleilnkvlqkrset....hkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekg 181
                  d+ +i + k +++++ ++ i  +++ ++ + + ++ le l   l+   +       +  + +  l+Tl   r + + + + ++h +++++nll  ++g
   CCD23365.1  55 DMSAIREVKYLQEMQHDNVIE-LIDIFMAYDNLNLVLEFLPTDLEVIIKDksilFTPADIKSWMLMTL---RGVHHCHRNFILHRDLKPNNLLVSPDG 148
                  566666666666665555555.8999999999999998887665554444122244445555666676...99************************* PP

  Kinase-like 182 glmlggftaLvra...gtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviy 241
                   +++ +f+  +      ++   + v + +  pEll  +         ++t ++d W +G+  +
   CCD23365.1 149 IIKVADFGLARAIpapHENLTSNVVTRWYRAPELLFGAR--------HYTSAIDIWSVGVI-F 202
                  *******844333211344444677799*****987633........47889*******64.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2456.93
//
Query:       CCD23366.1  [L=649]
Description: hypothetical protein NDAI_0B03320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-53  182.0   0.2    1.9e-53  181.2   0.2    1.3  1  DUF676         Putative serine esterase (DUF676)
    0.00077   18.7   0.1       0.21   10.7   0.0    2.3  2  LCAT           Lecithin:cholesterol acyltransferase
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.021   14.6   0.0    1.4  1  Abhydrolase_5  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.2   0.2   3.2e-57   1.9e-53       3     214 ..     192     387 ..     190     392 .. 0.93

  Alignments for each domain:
  == domain 1  score: 181.2 bits;  conditional E-value: 3.2e-57
      DUF676   3 kkdhLvVlvHGlqgn.saDlelikeqlekikeklpee...kieflmsennesktfkgidvlgerlaeevlevvkkkkdknkkiSfvghSlGgliaraai 97 
                 +  hLv+l+HG+++n +aD+ +++eql+ i++++pe+   ki++ ++++n+++t+ gi++lge+la+ +++ +++++    kiSf+ghSlGgli+++ai
  CCD23366.1 192 EYIHLVILTHGMHSNnTADMFYMMEQLRGINDRSPEDnheKIVIDGFNGNVCETELGIKYLGEKLAKHIVNDLYNDRIV--KISFIGHSLGGLIQSFAI 288
                 668************99*************66666554459********************************999988..****************** PP

      DUF676  98 aklkekemtlkeaikglepvtfitlasPhLGvlysskslinlglalleklkkslsmeqlgltGrdLflkddkdeknsllykllkdekdlkliealklFk 196
                 a++      +++++k + p++fi+la+P+LGv+++++           ++k+ ls +++g+tG++L l   kd++n+ ++ ll+ e+   li  l++Fk
  CCD23366.1 289 AYITIV---YPWFFKSVVPINFIALATPFLGVVTDNPK----------YVKVILSSGAVGKTGHELALL--KDSQNENILHLLSGEP---LITILSKFK 369
                 ***976...4799*************************..........********************9..8999999999999998...9999999** PP

      DUF676 197 rrvlyanvvndrivplas 214
                 +r++yan +nd+ivpl++
  CCD23366.1 370 NRTIYANYMNDGIVPLHT 387
                 *****************9 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   3.4e-05      0.21     109     174 ..     258     330 ..     250     349 .. 0.74
   2 !    5.5   0.0    0.0013       7.8      69     104 ..     395     429 ..     385     442 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.4e-05
        LCAT 109 kelieealklsgkkvvliaHSmGnllvlyflkwveaea.Wvdqhik..afislgapllGs....vkavkalls 174
                 k+ ++  ++ +  k+  i+HS+G+l+    +  +     W  + +    fi+l++p+lG     +k vk++ls
  CCD23366.1 258 KHIVNDLYNDRIVKISFIGHSLGGLIQSFAIAYITIVYpWFFKSVVpiNFIALATPFLGVvtdnPKYVKVILS 330
                 44556777788899***********998888876544359888875348**********72222466776665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0013
        LCAT  69 wkklvknlvkiGyeknktvvaapYDWRlsleerdkY 104
                 +++++++l k G +  + + +++  WRl   ++++Y
  CCD23366.1 395 YNEIMQELRKRGVQSKR-LSSVSSRWRLRKSKKEEY 429
                 99**************9.****************99 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.5e-06     0.021      19     106 ..     230     317 ..     221     328 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.5e-06
  Abhydrolase_5  19 aeklaksGyevvlvklPlnlavlgknkaeeiikea..pklekfvvgGhslGGvvasrfaaeeekiegvvflasYPekdelselskkvlsi 106
                     ek++ +G++  + ++ l++  lg+  a++i+++   + + k    GhslGG + s  +a    + + +f +  P   ++ +l+++ l +
     CCD23366.1 230 HEKIVIDGFNGNVCETELGIKYLGEKLAKHIVNDLynDRIVKISFIGHSLGGLIQSFAIAYITIVYPWFFKSVVPI--NFIALATPFLGV 317
                    57999***************************98511457788889*******99966666667777777666664..455566665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4788.11
//
Query:       CCD23367.1  [L=919]
Description: hypothetical protein NDAI_0B03330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-05   23.5   0.1    7.5e-05   22.5   0.1    1.6  1  SH3_9           Variant SH3 domain
    3.8e-05   23.2   0.1    0.00013   21.5   0.1    2.0  1  SH3_1           SH3 domain
    0.00071   20.0   0.0     0.0018   18.7   0.0    1.7  1  Transglut_core  Transglutaminase-like superfamily
     0.0031   17.2   0.0      0.006   16.2   0.0    1.5  1  SH3_2           Variant SH3 domain


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   1.7e-08   7.5e-05       1      49 []      17      67 ..      17      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.7e-08
       SH3_9  1 AlypyepreddeLsLqrGDvitvieesedgWlegs...ltGrtGlvPanyve 49
                A+y    + +  L + +GD+  v +   ++W++g+   +  + G++P n+v+
  CCD23367.1 17 AKYGWSGQAKGDLGFLEGDIMEVTRV-AGDWFYGKllrNRKCAGYFPNNFVT 67
                56777778888999**********99.9*******764499*********96 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   2.8e-08   0.00013       1      47 [.      16      62 ..      16      63 .. 0.91

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.8e-08
                EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTS.TEEEEEE CS
       SH3_1  1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgt.gkeGliP 47
                +A+Y   ++ +++L f +GD+++v   + ++W+ g+l ++ +  G++P
  CCD23367.1 16 RAKYGWSGQAKGDLGFLEGDIMEVTR-VAGDWFYGKLLRNrKCAGYFP 62
                699**********************9.8888*******9866689998 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.1e-07    0.0018      33     111 ..     530     605 ..     498     606 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.1e-07
  Transglut_core  33 aprrtpgsrdaeavletgkGncedfaslfvallRalGipaRvvtgylsgeeekeqsvasedaHawvevylegygWvplD 111
                     ++  ++++ +++++l + + +  + + lf  l+ +lGi + +v+g+l+++   +q+ + +++H+w  v + ++ W  +D
      CCD23367.1 530 SSDFSKEPPNLDQLLYQNHCTPYQLTWLFQRLANSLGITCEIVIGFLKTPG--SQTTEFKYNHCWLRVLV-NREWRLID 605
                     344667777799************************************884..567888999********.99997655 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.3e-06     0.006       9      54 ..      22      66 ..      14      69 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.3e-06
                -SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE.CCCE..EEEEGCGE CS
       SH3_2  9 vgedkseLsfkkGdvikvlslgskdsdgwwegev.gGrv..GlfPsslv 54
                 g+ k+ L f +Gd+  v+    +  ++w +g   ++r+  G+fP+++v
  CCD23367.1 22 SGQAKGDLGFLEGDIMEVT----RVAGDWFYGKLlRNRKcaGYFPNNFV 66
                5677899************....9999*****999999999******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1019  (0.0568353); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.40
# Mc/sec: 6841.05
//
Query:       CCD23368.1  [L=764]
Description: hypothetical protein NDAI_0B03340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-186  621.9  15.1   1.6e-186  621.7  15.1    1.0  1  Nup84_Nup100     Nuclear pore protein 84 / 107
     0.0056   16.7   1.1      0.015   15.3   0.2    2.2  2  L_lactis_RepB_C  Lactococcus lactis RepB C-terminus


Domain annotation for each model (and alignments):
>> Nup84_Nup100  Nuclear pore protein 84 / 107
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  621.7  15.1  1.8e-190  1.6e-186       2     729 ..      87     759 ..      86     760 .. 0.95

  Alignments for each domain:
  == domain 1  score: 621.7 bits;  conditional E-value: 1.8e-190
                   HHHHHHHHHHHHHHHHHHHHHSS-..TTT......---SSTTS-HHHHHHHHHHH-HHHHHHHHHHHHHHHT-------SS--S......STTHHHH CS
  Nup84_Nup100   2 enlelEaktWdLlerLysdrlssa..sekseeeeellelhpyssekelveellkkdselrelqivldWLeenakepeeeegeddelearahkwenTl 96 
                   +++elEa++W+Ll  L+s+r+s++  ++++e+e+    ++py+s+++++++ll+kd++l++++i++ WL+en +  e++++ +      ++kw nTl
    CCD23368.1  87 NDWELEARFWHLLDLLISYRVSDHdmNDENENENHANVVYPYNSSAIFEKDLLSKDHQLYQIWIIIVWLQENRTVGERPTSLP------TSKWVNTL 177
                   68*******************8888866677777788899*********************************9999999998......49****** PP

                   HC.SSHS...................HHSTTHHHHSGGG..S-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-HHHHHHHHTTSB-B-TTTS CS
  Nup84_Nup100  97 esikqkkrlrgvaassskekeeqlVtelDpDaplRqgrk..LdpkDeederallkaifellRaGkleeaielCketgqlwraaiLeGlklyhdpnid 191
                   +s  + k                   + D+Da lR+     L++kD +d++ ++k+i+ ll++G+++e ++ C+ +++l+ ++iL+G+++y++p+id
    CCD23368.1 178 ISGGGLK-------------------SSDLDARLRDPAVvkLHEKDIQDDQMFFKYIYDLLLSGNYDELFDECRLSENLTFSMILCGMQEYVNPKID 255
                   **98777...................89*******888777******************************************************** PP

                   GGGTT.-SS-BSBTTHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTS---H.HH.T.....-SHHHHHHHHHHHHHHHHHHHHHHH............ CS
  Nup84_Nup100 192 eelde.keevegnksralWkrtcyklsknknldeyeraiyglLsGdlesvlkv.c.....ksWedhLwaylnalleeqveqelrelvkkkseseelp 281
                   ++ d+ +++++g+k++alW+r++++lsk++n   yeraiy++L+G + +  ++ +      +We ++++yln++++++ve++l +            
    CCD23368.1 256 TQVDNeFDSQQGVKKHALWRRAVFALSKSSNIGYYERAIYQYLAGVILEDNNAgKdqailMDWETEFLLYLNQIFQIEVENYLLQ------------ 340
                   ****99***************************************8877666653446669************************............ PP

                   TTSS-GGG--S-------H.HHHHHHHHHH....SHHHHHSCCHHHHHHHHCS-HHHHHHHHHHTTHH-----------TTSHHHHHHHHHHHHHHH CS
  Nup84_Nup100 282 eeklsseelvlalpkpass.eeilnllsslsnervreeaeeplriiqaaiIlddvdsllesladalskaakkdesenelleepdllRflaHlilflr 377
                   ++k++seelvl+lp+++ s  +ilnll+s+    + +e+e p+r++ +aiIld+++sl++s+ ++l++   ++e++n+ll+ep+llR+++Hl++fl+
    CCD23368.1 341 NNKFDSEELVLQLPSKSISlPDILNLLASK----YPTESESPIRVLIGAIILDKLPSLVHSSVEMLQDLVAGEENNNDLLDEPYLLRVMTHLVIFLD 433
                   689*************6667**********....***********************************99************************** PP

                   HH...ST.TSS-HHHHHHHHHHHHHHHHHTT-GGGHHHHHTTGGGGGG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Nup84_Nup100 378 llgksepeskeeeeakeniitaYislLreagkyeliplYvsfLpeeravevyskfLesitdkeeRekqLklakklgldveailkrtvervieetese 474
                    +   +  + +++ +k+ +itaYis+L+++g+ye ip+Y+ fL++e+a+e+ys++L++++d+  RekqLkl+ +l+l+ + ilkrt++rv++etese
    CCD23368.1 434 FV---T-PGIISKLDKKRLITAYISILKLHGLYESIPIYINFLEPEDALEAYSFILSTMEDPIVREKQLKLMIFLKLPKSDILKRTTQRVFTETESE 526
                   **...4.3799************************************************************************************** PP

                   XXXXXXXXX.........XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXX CS
  Nup84_Nup100 475 yepseeidiekeeelsedesevteeDlklirsleWllfedelyeealeqsnalirrFLlngklaaakelfkrlnpkdlikeydleeledeleeskde 571
                   yep++ei++          +ev+++D++li  +eWl +e++ y +a+e+++al rrFL+ngk++a+  +fkr++++dl+k+ydl +l+ +  +s+d+
    CCD23368.1 527 YEPKNEISV---------IFEVNDIDKHLIYNVEWL-LEGKYYMDAMEAVIALARRFLINGKVKALDFFFKRNSVDDLVKNYDLTKLAAQR-MSTDD 612
                   *********.........9*****************.9**********************************************8877665.55799 PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXX.X...XXXXXXXX CS
  Nup84_Nup100 572 leeeteeaareyleyealiealdaleewkkllsnskpkkkkqyeseklkewkqklkelvkqakeliknvLkfgWLvdltekeeeeerkeeleelRql 668
                   ++ + +++ +e+++ye li++l+++e+w+k++++ ++       +++++++++k++e+++ + ++ik     ++Lvdlte++++  ++e+l+e+R+l
    CCD23368.1 613 DSIILDCKTQELRQYERLIDGLNNYEQWNKTVKLLNS-------ESNIPSLIEKFREYTDGTYDIIK-----TFLVDLTENHDH-PEQEILHEIRSL 696
                   9*********************************998.......788********************.....********4444.679********* PP

                   XXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Nup84_Nup100 669 yiPelileLhsvlvsartlls..enlkealeLanvVAdeesklyevFsksgrlkellqklaes 729
                   y+P li+eLh+ lv+a++ll+  ++++eal+++++VA+e++k+y +F++s++lke+lq++a++
    CCD23368.1 697 YTPFLIIELHKGLVEASKLLKipKFINEALNYTSLVANETDKIYLLFKSSNKLKEYLQLVANT 759
                   ************************************************************997 PP

>> L_lactis_RepB_C  Lactococcus lactis RepB C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         1   8.9e+03      47      69 ..     105     127 ..      99     130 .. 0.68
   2 !   15.3   0.2   1.7e-06     0.015       8     121 ..     189     305 ..     184     306 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1
  L_lactis_RepB_C  47 fLlsaldltDikllagLqkevyP 69 
                      + +s  d+ D +   + ++ vyP
       CCD23368.1 105 YRVSDHDMNDENENENHANVVYP 127
                      45667777777777777777777 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.7e-06
  L_lactis_RepB_C   8 eykleDkaylkdkaqkeenekaLlaea....mqskYtklLlekfLlsaldltDikllagLqkevyPlYdeL..kelrGlkgvkkhlsYvaakqe 95 
                      + +l+D+a +k ++++ +++++ ++      +  +Y  +L +++ ls+ +lt   +l g+q+ v P+ d    +e    +gvkkh  + +a   
       CCD23368.1 189 DARLRDPAVVKLHEKDIQDDQMFFKYIydllLSGNY-DELFDECRLSE-NLTFSMILCGMQEYVNPKIDTQvdNEFDSQQGVKKHALWRRA-VF 279
                      566778888887777777777776543111144455.45566666654.688899************9975336899********887655.67 PP

  L_lactis_RepB_C  96 dyskknivkYLkkaieqYlptvklqd 121
                      + sk+  + Y ++ai qYl  v l+d
       CCD23368.1 280 ALSKSSNIGYYERAIYQYLAGVILED 305
                      89999777899********9987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 5685.47
//
Query:       CCD23369.1  [L=377]
Description: hypothetical protein NDAI_0B03350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-15   57.0  17.2      3e-15   57.0  17.2    3.4  3  Iwr1      Transcription factor Iwr1


Domain annotation for each model (and alignments):
>> Iwr1  Transcription factor Iwr1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.38   6.8e+03      43      43 ..      92      92 ..      47     114 .. 0.51
   2 !   57.0  17.2   1.6e-19     3e-15       2      74 .]     160     231 ..     159     231 .. 0.89
   3 ?   -6.9   9.5         1   1.8e+04      44      62 ..     311     329 ..     271     361 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.38
        Iwr1 43 a 43
                +
  CCD23369.1 92 D 92
                1 PP

  == domain 2  score: 57.0 bits;  conditional E-value: 1.6e-19
        Iwr1   2 dYVyDvYvreee..eeeseeeetekdigvlvieeedeelldafaeddedsdeeededdeDsNaEdnyrnDYPdeE 74 
                 dYVyD+Y+ e+   eee ++++ +++ig+++i + d +l+    ++ded+d    +ddeDsN+E++y+nDYP++E
  CCD23369.1 160 DYVYDIYHLENLpdEEEISKYKRDNKIGFVKIINTDMDLV---PDEDEDEDVLARSDDEDSNEENYYQNDYPEDE 231
                 9******997768799999******************988...566777777777*******************8 PP

  == domain 3  score: -6.9 bits;  conditional E-value: 1
        Iwr1  44 eddedsdeeededdeDsNa 62 
                 e+ +dsde e++ d D N+
  CCD23369.1 311 EETHDSDEAEEDIDVDYNE 329
                 3444555444555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2843.08
//
Query:       CCD23370.1  [L=294]
Description: hypothetical protein NDAI_0B03360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-40  137.2   0.0    6.4e-40  136.7   0.0    1.1  1  adh_short      short chain dehydrogenase
      7e-27   94.5   0.0    9.6e-27   94.0   0.0    1.1  1  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    1.7e-11   44.3   0.1    1.8e-10   41.0   0.1    2.1  1  KR             KR domain
    1.2e-05   24.9   0.0      2e-05   24.2   0.0    1.4  1  Epimerase      NAD dependent epimerase/dehydratase family
     0.0037   16.3   0.1     0.0058   15.7   0.1    1.3  1  3Beta_HSD      3-beta hydroxysteroid dehydrogenase/isomerase 
  ------ inclusion threshold ------
       0.24   10.4   0.0       0.38    9.8   0.0    1.2  1  RmlD_sub_bind  RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   0.0   2.1e-43   6.4e-40       2     190 ..      40     227 ..      39     231 .. 0.93

  Alignments for each domain:
  == domain 1  score: 136.7 bits;  conditional E-value: 2.1e-43
                 EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHH CS
   adh_short   2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseee 100
                 v+++tG+s+G+G++i+k+l +++++++++d  + ++ + +ke     +k++++++D+++ ++v+++ ++++k+ +++ +L+nNAGit ++p  e++++e
  CCD23370.1  40 VAIITGGSGGLGLEIVKRLTSRNVTCIILDVIPPNV-RFKKE-----EKVIFYRCDISSIHQVKKVHRDIRKRNERISLLINNAGITCVKPLIEMTNQE 132
                 89******************************9888.44444.....46************************************************** PP

                 HHHHHHHHTHHHHHHHHHHHHHHH.HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGT....EEEEEEEESSBSSHHHHHH CS
   adh_short 101 wervievNltgvflltravlpaml.kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptg....irvnavaPGlvdTdmakel 190
                 ++++ievN+ g++ +++++lp ++ ++ +  Ivn++Sv g+ + a+++ Y+AsKa++++  +sla  l++ +    ir   v++G ++T m +++
  CCD23370.1 133 IKKIIEVNFIGAYGMIETFLPDLMrDNDKCYIVNIASVLGLISPANLTGYGASKAGMIAVHKSLASSLKNCKeghkIRTLLVCTGKIKTTMFETV 227
                 **********************7779***************************************99987555566***************9865 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   3.2e-30   9.6e-27       4     189 ..      48     234 ..      45     246 .. 0.92

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 3.2e-30
                   TSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHH CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdrald 100
                    g+G +i+k+l ++  + ++ d+   +     ++++e +  +++cD+++  qv+++ ++++++ +++  l+nnagi+    +p++e++ +e++++++
    CCD23370.1  48 GGLGLEIVKRLTSRNVTCIILDVIPPN----VRFKKEEKVIFYRCDISSIHQVKKVHRDIRKRNERISLLINNAGITCV--KPLIEMTNQEIKKIIE 138
                   58999*****************99999....56777656667*************************************..**************** PP

                   HHTHHHHHHHHHHHH.HCTSC..CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGG....GTEEEEEEEE--BHCTGGGGSTTHHHHH CS
  adh_short_C2 101 vnlyslfllakaalp.lmkeg..gsivnlssvgaervvpnynaygaaKaalealtrylAvelgp....kgiRvNavspgpikTlaasgikgfdell 189
                   vn+ +++ +++ +lp lm+++    ivn++sv + ++ +n + yga+Ka+++a+ ++lA +l +    ++iR   v+ g ikT++ + ++  +++l
    CCD23370.1 139 VNFIGAYGMIETFLPdLMRDNdkCYIVNIASVLGLISPANLTGYGASKAGMIAVHKSLASSLKNckegHKIRTLLVCTGKIKTTMFETVPTPSSIL 234
                   ******************9998889*************************************87666699****************9999877665 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1   6.1e-14   1.8e-10       2     155 ..      40     188 ..      39     205 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 6.1e-14
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 + +itGG GgLGle+++ l ++  + ++l    ++     +       +++ +v ++++D+s+ ++v+++ ++i++++++i+  i+ Ag++  k+l em
  CCD23370.1  40 VAIITGGSGGLGLEIVKRLTSRNVTCIILDVIPPN--V--R------FKKEEKVIFYRCDISSIHQVKKVHRDIRKRNERISLLINNAGITCVKPLIEM 128
                 569************************99766622..2..2......1245689********************************************* PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT.....S--SEEEEEEEHHHHH--TT-HHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled.....esldffvlfSSiagllgsagqanYaaaNaf 155
                 t+++++++++  + Ga  + e++ +     ++  ++v ++S+ gl+  a  + Y a  a 
  CCD23370.1 129 TNQEIKKIIEVNFIGAYGMIETFLPdlmrdNDKCYIVNIASVLGLISPANLTGYGASKAG 188
                 ***************987666554445533666689999*******99999999997665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   6.6e-09     2e-05       2     100 ..      42     149 ..      41     167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 6.6e-09
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHH.....HT-SEEEE--S---HH....HHHHSHHHHHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfke.....eqpdavihlAavggva....assedpadfiekn 91 
                 ++tG++G +G  +vk+l ++++++i ld  + + +++++e++ ++++d+    +++++ ++     e++   i+ A++ +v+     ++++ +++ie n
  CCD23370.1  42 IITGGSGGLGLEIVKRLTSRNVTCIILDVIPPNVRFKKEEKVIFYRCDISSIHQVKKVHRDirkrnERISLLINNAGITCVKplieMTNQEIKKIIEVN 140
                 8***************************************************99988876422222477788888876554311115666677777777 PP

                 THHHHHHHH CS
   Epimerase  92 lqgtlnlle 100
                 ++g++ ++e
  CCD23370.1 141 FIGAYGMIE 149
                 777776666 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   1.9e-06    0.0058       1      97 [.      42     145 ..      42     153 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.9e-06
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlD.....lrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvag..klted...eim 89 
                 ++tGg+G lG ++vk+L +++   +  +lD     +r+++e +  + ++++ +++++    + ++++  e ++++i  a+++ v+   ++t++   +i 
  CCD23370.1  42 IITGGSGGLGLEIVKRLTSRNV--TCIILDvippnVRFKKEEKVIFYRCDISSIHQVKK-VHRDIRKRNERISLLINNAGITCVKPliEMTNQeikKII 137
                 69*****************994..66678844444555555555555555555444432.233445555556777776666655433323333011455 PP

   3Beta_HSD  90 kvnvkGTr 97 
                 +vn  G  
  CCD23370.1 138 EVNFIGAY 145
                 66666655 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00013      0.38       4      60 ..      42     118 ..      40     144 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00013
                    EEESTTSHHHHHHHHHCTTTSEEEEEE-TT...............T--TTSHHHHHHHHHHH--S.....EEEE--- CS
  RmlD_sub_bind   4 lvtGanGqlGseLakqlaeeglevlaltre...............eldltdaeavaellkeakpd.....vvvnaAA 60 
                    ++tG++G lG e++k+l+++++ ++ l+                 ++d++  ++v+++ ++++++     +++n A 
     CCD23370.1  42 IITGGSGGLGLEIVKRLTSRNVTCIILDVIppnvrfkkeekvifyRCDISSIHQVKKVHRDIRKRnerisLLINNAG 118
                    69*******************99988877778888999999999999999999999988776653222225666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2194.23
//
Query:       CCD23371.1  [L=707]
Description: hypothetical protein NDAI_0B03370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-25   88.4   0.2    1.1e-24   86.6   0.1    2.0  2  PX        PX domain
    2.8e-06   27.1   7.8    0.00047   19.8   0.6    2.5  2  Vps5      Vps5 C terminal like


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.1   1.2e-28   1.1e-24       6     112 ..     234     369 ..     230     370 .. 0.96
   2 ?   -3.4   0.0       1.1   9.5e+03      30      42 ..     672     684 ..     648     687 .. 0.67

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 1.2e-28
                 EEEEEEEEE.TTSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSS............................... CS
          PX   6 vsvlerets.gskkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsv............................... 72 
                 +++l++++   ++  sy++y+++++++    +vkRrYsdFe+L++ L r fp+v iPp+P+k++++++                               
  CCD23371.1 234 CKILDATKIsEGQGRSYIAYTIKYNDS----SVKRRYSDFESLRNILVRLFPMVLIPPIPEKQSIKNYgkvitgatsnyqlptnaqtsvdlslsiingt 328
                 677887777788999**********96....***********************************99******************************* PP

                 .CTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHHS CS
          PX  73 .rkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLev 112
                  +++de+ i++r ++L+++L++ll++ e+++++++++FL++
  CCD23371.1 329 iNNSDEKLIRHRVRMLTQFLKKLLKNDEIMKTSIMQDFLSS 369
                 ***************************************87 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.1
                 TSSSEEEEEEEHH CS
          PX  30 tgakewtvkRrYs 42 
                  g++++t+ ++Ys
  CCD23371.1 672 RGEEMSTILKQYS 684
                 2356666666666 PP

>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.6   5.3e-08   0.00047      50     165 ..     461     576 ..     436     589 .. 0.87
   2 !   10.3   1.5   4.1e-05      0.37     165     231 ..     632     699 ..     620     702 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.3e-08
        Vps5  50 lvsqrkelasataelakslesLaslels.kslsralsqlaeveerikellerqaeqdvltLgetideylrligsvksvfeqRvklwqkwqsaeqelskk 147
                 + +  +++ + ++e+++   +L++le + ++l   l  ++    + ++ l++  ++  +++ e ++e + ++g+ +++ + R+  + +++ +++ l  k
  CCD23371.1 461 ITKTLHDIGNDMKEISELFLNLSNLEPEnHELFGELLYVSGSYGSSASTLDELVNKLYFNINEPLNESIYMMGAARELIKYRKMKYLQLNMIKKSLDSK 559
                 555667888999**************7647899999999************************************************************ PP

        Vps5 148 keqleKlekaaksqqdkl 165
                  +q+eKl++++  +++ l
  CCD23371.1 560 SHQFEKLRQQNV-ANEHL 576
                 *********954.33444 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 4.1e-05
        Vps5 165 lqqlkkeveelerkvqeaekeFeeisetikk.ElerFetervedfknvvekyLesaiesqkevielWe 231
                  ++l k++e l++ v  +e++ e is++ik+ El +F++er e++ +++++y + + +  ++ + +W+
  CCD23371.1 632 CKSLSKDIELLKESVSVTEDDMEIISKVIKDeELPKFSKERGEEMSTILKQYSQYMRAYAEKNLAIWK 699
                 5789999***********************73699**************9998777777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1332  (0.074293); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5226.25
//
Query:       CCD23372.1  [L=1446]
Description: hypothetical protein NDAI_0B03380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-25   89.8   0.0    1.3e-24   87.0   0.0    2.4  2  SpoU_methylase  SpoU rRNA Methylase family
  ------ inclusion threshold ------
       0.14   11.8   0.4       0.52   10.0   0.4    2.0  1  DUF3440         Domain of unknown function (DUF3440)
          6    7.4   7.2          4    8.0   0.1    3.9  4  CLAMP           Flagellar C1a complex subunit C1a-32


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.29   1.7e+03      42      86 ..     321     365 ..     307     375 .. 0.73
   2 !   87.0   0.0   2.2e-28   1.3e-24       2     141 ..    1296    1438 ..    1295    1439 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.29
                     SHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEESTT-S CS
  SpoU_methylase  42 npeakraaagalevlelkvvdsleealkelkeegfalvatslkgk 86 
                      +++ +++   +    l+++  l+ al++l+ ++ +++++  +++
      CCD23372.1 321 PSKVEEITETWKRFTTLYEIVALDTALNQLHAANADIIGLFDDAT 365
                     455555544444555588999999999999999999999877666 PP

  == domain 2  score: 87.0 bits;  conditional E-value: 2.2e-28
                      EEEEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEE..SSHHHHHHHHCCCTEEEEEESTT-SEGC... CS
  SpoU_methylase    2 livvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvv..dsleealkelkeegfalvatslkgksls... 89  
                      livv   +++p NlG i+R+++++g+ +l+ v++ ++  ++p++k++a+ a  ++++++v  d + e++k  k+eg+ l+++++ +ks++   
      CCD23372.1 1296 LIVVASLVDKPPNLGGICRLCDVLGV-GLLTVQDIKV-KNHPQFKNVAVTADRWMPMEEVpvDGIVEFMKLKKREGYSLIGLEQTDKSVKldn 1386
                      7999**********************.8888887887.9*****************98876699********************999888889 PP

                      CSHHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS--HHHHHHHHH CS
  SpoU_methylase   90 eidlkekvalvfGnEdkGlsnelleladrlvkIpmsgeveSLNvavAvaill 141 
                      ++++++k+++++G+E +G++  ll+++d +++I++ g ++S+N+++A+a+++
      CCD23372.1 1387 DYRFPRKCLILLGTEAHGIPGPLLNELDLCLEIKQFGVIRSMNIQTATAVIV 1438
                      99***********************************************986 PP

>> DUF3440  Domain of unknown function (DUF3440)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4   8.8e-05      0.52      65     125 ..     242     303 ..     233     341 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.8e-05
     DUF3440  65 htW..ksyvkfLLstlpeelrenylkklkvsikfWrekGgalseetikelkeaeikieveeks 125
                  +W  k+y++fLL  l ++  +  l k+ ++ ++W +   +l+ +t++el++ +++i +   +
  CCD23372.1 242 ASWkqKNYLSFLLRILSDKKMSPELIKFVQTEQYWVHLQDSLN-HTVHELRKLGLSILKLTIQ 303
                 5672257******************************999996.6899***999988766554 PP

>> CLAMP  Flagellar C1a complex subunit C1a-32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.59   3.5e+03      34      80 ..      75     121 ..      60     135 .. 0.71
   2 ?    8.0   0.1   0.00066         4       8      49 ..     677     718 ..     671     743 .. 0.75
   3 ?    0.5   0.1      0.14   8.4e+02      16      90 ..    1029    1098 ..    1024    1104 .. 0.71
   4 ?   -4.0   0.1         3   1.8e+04      15      34 ..    1161    1180 ..    1158    1184 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.59
       CLAMP  34 slenveksfkyfkelllrhsverppesiglFsvdqvkaiieYiltty 80 
                 +l+++++ ++    ++l + +++  e  + F+    ++i++Yil++ 
  CCD23372.1  75 NLNQLNEYLENKDAQILAQLIAQTNELWKKFDAWVTNKILQYILSNH 121
                 55555666666666777777888888888999999999999998863 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00066
       CLAMP   8 eqnfsveqtsafltilkkllenliekslenveksfkyfkell 49 
                 + +fs+e+   f++i kk+   +i++ + n +++++++ ++ 
  CCD23372.1 677 RDKFSPEKFKFFVSIFKKMVSDSIQNFHINADEVLSLYGKIT 718
                 679***********************6668788777776654 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.14
       CLAMP   16 tsafltilkkllenliek.slenveksfkyfkelllrhsverppesiglFsvdqvkaiieYilttyfrhykLYkyl 90  
                   +  l+i k++ + ++++ ++e+   +++ +ke ++        +  + F+ +++++i ++i + ++ h k ++++
  CCD23372.1 1029 SASTLDISKDIKDMILSNiTMEEGSPLVRTYKEWFI------AYNFAKKFNEKKATEIEDFIFELLVDHSKPIQVV 1098
                  555666666666666666666666667777777777......3335678***************999998877766 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 3
       CLAMP   15 qtsafltilkkllenlieks 34  
                  + +++ +ilk+l+ n+ +++
  CCD23372.1 1161 KNATLKSILKNLFLNAQKTQ 1180
                  66788899999999887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 9762.67
//
Query:       CCD23373.1  [L=143]
Description: hypothetical protein NDAI_0B03390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.3   11.2   2.5       0.81    9.8   0.1    2.4  2  bZIP_2    Basic region leucine zipper
        1.2    9.0   7.7       0.93    9.4   6.1    1.5  2  CSRNP_N   Cysteine/serine-rich nuclear protein N-terminus
        3.9    7.8   9.7        4.7    7.5   1.5    2.1  2  DUF2951   Protein of unknown function (DUF2951)


Domain annotation for each model (and alignments):
>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00014      0.81      28      52 ..      33      57 ..      32      58 .. 0.93
   2 ?    0.4   0.4      0.12   6.9e+02      37      54 .]      87     107 ..      77     107 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00014
                HHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 28 eeleervkeLeeeNaqLrqkveqLe 52
                +e+e+ v +Le+ N++L + +++Le
  CCD23373.1 33 REIENSVHHLERSNDKLAKYIAKLE 57
                689******************9997 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.12
                 HHHHHHHH...HHHHHHHHHH CS
      bZIP_2  37 LeeeNaqL...rqkveqLeke 54 
                 ++e N  L    q++e+L++e
  CCD23373.1  87 MNENNIVLknySQRLEALTQE 107
                 444555556666777887776 PP

>> CSRNP_N  Cysteine/serine-rich nuclear protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   6.1   0.00016      0.93      41     120 ..      19     100 ..      11     125 .. 0.81
   2 ?    0.8   0.1     0.064   3.8e+02      49      88 ..      96     135 ..      91     141 .. 0.46

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00016
     CSRNP_N  41 slkkftlaehaieqkrlrreklrerlkeeklealklklsssdlleeeeeealevddisdedld..seaelddylflqplstk 120
                 ++++++ +e  + q++++ + ++ +++++kl +   kl+ ++++eee+e+++ev+ i+++dl+  +++ +++ + l+ +s++
  CCD23373.1  19 AIRDMSSDELFNIQREIENSVHHLERSNDKLAKYIAKLEGNHHHEEEDEDTSEVETIDESDLQlfKDSMNENNIVLKNYSQR 100
                 5677888888888889998999999999999999999999***********************9666777888889888865 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.064
     CSRNP_N  49 ehaieqkrlrreklrerlkeeklealklklsssdlleeee 88 
                 +++++ + l +e++ ++  ++++e++k+k++ sd+ ++++
  CCD23373.1  96 NYSQRLEALTQEHIFRTSGKATNENIKSKNIDSDNNTQQN 135
                 4444444444444444444444444444444444333333 PP

>> DUF2951  Protein of unknown function (DUF2951)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   1.5   0.00079       4.7      22      63 ..      27      68 ..      13      85 .. 0.72
   2 ?    4.8   2.3    0.0055        33      19      65 ..      88     134 ..      74     141 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00079
     DUF2951 22 tmlekldeikdslktqekvyikldktleelrkekeideknkk 63
                 +++   ei++s +  e+ ++kl k + +l+ ++  +e + +
  CCD23373.1 27 ELFNIQREIENSVHHLERSNDKLAKYIAKLEGNHHHEEEDED 68
                56777889*****************99888765544443333 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0055
     DUF2951  19 ndktmlekldeikdslktqekvyikldktleelrkekeideknkkkn 65 
                 n++ ++ k    ++   tqe+++    k+ +e  k k+id  n+ ++
  CCD23373.1  88 NENNIVLKNYSQRLEALTQEHIFRTSGKATNENIKSKNIDSDNNTQQ 134
                 444444444445666789**********9999999999998776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1734  (0.0967148); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1124.83
//
Query:       CCD23374.1  [L=310]
Description: hypothetical protein NDAI_0B03400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-46  154.1   5.4    6.4e-17   61.3   0.1    3.5  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.1   8.9e-14   1.6e-09       4      96 ..       8      90 ..       5      91 .. 0.90
   2 !   61.3   0.1   3.6e-21   6.4e-17       3      93 ..     118     203 ..     116     206 .. 0.95
   3 !   56.3   0.2   1.3e-19   2.3e-15       4      93 ..     225     309 ..     223     310 .] 0.94

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 8.9e-14
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr  4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96
                +++ +l+ G l+g+ +++  +Pld++Ktr+q +k+s+       +l +lk+i      + ++rG lp+ lr+++ s+l++++ + ++++l k+
  CCD23374.1  8 KTTVHLVGGFLGGLSSAVTLQPLDLLKTRIQQHKGST-------LLTALKEIK---NPLQFWRGTLPSALRTSIGSGLYLSCLNIMRTTLVKE 90
                67889**************************999995.......677888885...6899**************************9999875 PP

  == domain 2  score: 61.3 bits;  conditional E-value: 3.6e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 l++ ++l++G+la  + +++t+P+ v+K+r  +   ++k+     + +++ +iy +eG +g++rG+++++lr ap+++l+++lye+ k+++
  CCD23374.1 118 LTMSENLITGALARGLVGCITMPITVLKVRYESTFYHYKS-----LNEAIINIYTTEGTKGFFRGVGATCLRDAPYAGLYVLLYEKSKQIV 203
                 78899****************************9999998.....889***************************************9986 PP

  == domain 3  score: 56.3 bits;  conditional E-value: 1.3e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 s+l +  ++ +++++at++t+Pld++Ktr+q+++k  +      ++++++ i+++e ++ l++Gl+++l+r a ++++ +++ye l++ +
  CCD23374.1 225 STLVNSTSAFISASLATTATAPLDTIKTRMQLDPKVFNG-----FFKTVYIIVRKESVLNLFSGLSMRLTRKALSAGIAWGIYEDLIKRF 309
                 567788999***************************998.....****************************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2456.61
//
Query:       CCD23375.1  [L=187]
Description: hypothetical protein NDAI_0B03410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-35  120.2   0.0    5.8e-35  119.6   0.0    1.2  1  Frataxin_Cyay  Frataxin-like domain


Domain annotation for each model (and alignments):
>> Frataxin_Cyay  Frataxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   0.0   3.2e-39   5.8e-35       3     104 ..      78     178 ..      76     182 .. 0.96

  Alignments for each domain:
  == domain 1  score: 119.6 bits;  conditional E-value: 3.2e-39
                    HHHHHHHHHHHHHHHHHHH.HHHHH--CTS.SEEEETTEEEEEETTS-EEEEEEEGGGTEEEEEES.SEEEEEEEET.TEEEETTTT-BHHHHHHH CS
  Frataxin_Cyay   3 deeyhkladelldsleekleelaeeaeedeldveyssgvLtiefekkgtyvinkqppnkqIWlsspisgpkrfdydekgeWiskrdgseLkelLee 98 
                     ++yh  ad++l++l ekle +++e+++d+++v++s+gv+t+e++  g yvinkqppnkqIW +spisgp+rfd+ + ++Wis r+g++L ++L++
     CCD23375.1  78 LQTYHVEADSFLNNLLEKLEMVSDEYPNDITEVDLSHGVMTLEVPAIGAYVINKQPPNKQIWFASPISGPDRFDFYK-KQWISLRNGNKLLDVLQK 172
                    589************************************************************************87.8***************** PP

                    HHHHHH CS
  Frataxin_Cyay  99 elskal 104
                    el++a+
     CCD23375.1 173 ELNDAI 178
                    **9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1483.90
//
Query:       CCD23376.1  [L=154]
Description: hypothetical protein NDAI_0B03420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.075   14.0   0.8       0.19   12.7   0.0    2.0  2  DUF4834   Domain of unknown function (DUF4834)
       0.23    9.8   0.0       0.29    9.5   0.0    1.0  1  BCCT      BCCT, betaine/carnitine/choline family transporter


Domain annotation for each model (and alignments):
>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.1e-05      0.19       5      77 ..       5      80 ..       1     109 [. 0.50
   2 ?   -0.8   0.4      0.33     3e+03      73      86 ..     132     143 ..      99     152 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
     DUF4834  5 lfi.lifiiailviglsilsvilrtvfglgsrkkssksaqkqfgnstnsnqqksq......srsetkeegeiieeersek 77
                +++ l+ ++++++i l +ls++ +  +g  s ++s + +  +++++ ++  +  +      +    ke ++ +++++s k
  CCD23376.1  5 AYFvLFCVVILFIIILPLLSNVGNFKIGRPSSRPSDQDVPTSNRQRLKNAINDPNllkfklK----KEPEDNYDDNTSGK 80
                33335555555555555555555555665555555555544444444444444446644441....33333333333322 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.33
     DUF4834  73 ersekeakrk.kiFe 86 
                 er e   kr  k F+
  CCD23376.1 132 ERAEA--KRMsK-FK 143
                 11111..12212.33 PP

>> BCCT  BCCT, betaine/carnitine/choline family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   3.3e-05      0.29      41      74 ..       6      39 ..       2      43 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 3.3e-05
        BCCT 41 lylllvllflvfllvlafskygkikLGkddekpe 74
                +++l  +++l+++++ ++s++g+ k+G+++++p+
  CCD23376.1  6 YFVLFCVVILFIIILPLLSNVGNFKIGRPSSRPS 39
                44444555555555557888**********9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1109  (0.0618551); expected 358.6 (0.02)
Passed bias filter:                      651  (0.0363099); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 1258.25
//
Query:       CCD23377.1  [L=856]
Description: hypothetical protein NDAI_0B03430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-50  169.4   4.3    1.6e-49  168.8   4.3    1.3  1  UCH        Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
      0.042   12.1   6.1      0.059   11.6   6.1    1.1  1  SSP160     Special lobe-specific silk protein SSP160
       0.13   12.9   0.3        0.9   10.2   0.1    2.4  2  SelK_SelG  Selenoprotein SelK_SelG
       0.23   11.4   4.9       0.66    9.9   4.9    1.8  1  DUF3439    Domain of unknown function (DUF3439)
       0.99    8.9  28.0        9.5    5.7  28.0    2.6  1  UCH_1      Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   4.3   4.4e-53   1.6e-49       2     257 .]     129     776 ..     128     776 .. 0.90

  Alignments for each domain:
  == domain 1  score: 168.8 bits;  conditional E-value: 4.4e-53
                 EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TT.HHHHHHHHHHHHHH...SH-CCEE--HHHHHHHHHHSGG..GTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx..xxx RF
         UCH   2 GlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkg.elakalkdlfkell...kskskavsPkklkktlsklaks..fsg 94 
                 Gl N GntC+mnsvlQ+L+s +el d+l ++ ++++e+++++e+  +++++  +  +  +l++l+++l+    +++ +++++kl+kt+++  ++  + g
  CCD23377.1 129 GLLNDGNTCFMNSVLQSLASSKELMDFLDTTIKQEQEQEQEQEQVGDEKKEDVDiGFTLSLNELLSQLNakyYKERPYFKTNKLLKTMKNAPNKnmLLG 227
                 9***************************9976666666555555333433444446999999999999998866899************998877788* PP

                 SSTCEHHHHHHHHHHHHHHHHCC....HCCCHHH.HHHCCCTTSHHHHHH-EEEEE........................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxx....xxxxxxx.xxxxxxxxxxxxxxxxxxxxx........................................... RF
         UCH  95 ykqqDaqEflaflLdqlhedlnr....evaeekw.kkhlkrndslitdlfegqlks........................................... 145
                 y+q+DaqEf++++L++l+++l++    +++ee+  kk++++n++  +++++  l +                                           
  CCD23377.1 228 YDQEDAQEFFQNILSELEKNLKSissqNNKEEEEeKKEQEKNSNECVKILKKDLPKdaiigqeqlgkvgtvyipteqiepntstalpssnpqeklytpf 326
                 ***********************999844444445999999999999999999999******************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
         UCH 146 ................................................................................................... 145
                                                                                                                    
  CCD23377.1 327 klitpldgisaerigclqcgenggirysvfsglslnlpnenigmtlklsnllnewikpeiidgvecnrcaleaikshlldqleqyhnnsteipqklida 425
                 *************************************************************************************************** PP

                 ......................................EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-G.................. CS
                 ......................................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx.................. RF
         UCH 146 ......................................klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldls.................. 185
                                                       ++ ++r P+ L+ih++R  ++ +    +K+n++v f+ +l+l+                  
  CCD23377.1 426 vkdrveclqkilskpvideedykklhtenmvrkcskskQILISRPPPLLSIHINRSVFDVRtyqIRKNNSRVLFKSKLNLEpwtcdideinldarlpms 524
                 **********************************************************9999999***********99999666666666666666666 PP

                 ...............GGBSS-BTTS-TCS-B.................................................................... CS
                 ...............xxxxxxxxxxxxxxxx.................................................................... RF
         UCH 186 ...............sylaeekkkkteekkk.................................................................... 201
                                +                                                                                   
  CCD23377.1 525 kkesslgqdefseddE--------------Attngeyynrlhqkyqqefedssdedddsddneiysmdnnrrrtrkdvrnydplngeiedsssvyssad 609
                 6666555554444440..............044455555666666666777777788888888899999999999999999999999999999999999 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
         UCH 202 ................................................................................................... 201
                                                                                                                    
  CCD23377.1 610 ekdthdsieetdslgntirkrvikqetferaedsiekenegaeanhdddnddnndeqehkgnnddelpsssplaaseeeedgevqetslspsgaipqti 708
                 99999999******************************************************************************************* PP

                 .............EEEEEEEEEESCTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCCCTT..CEEEEEE CS
                 .............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
         UCH 202 .............YeLiavvvHsGslssGHYvayiknekngkWykydDetvkevkeeeevls..sayiLfY 257
                              Y+L +v+vH+G++++GHY+a++k   +g W++++Detv  v+e+ evls   +++LfY
  CCD23377.1 709 rkkfdstpigpltYSLRSVIVHYGTHNYGHYIAFRK--YRGVWWRISDETVYIVDEA-EVLStpGVFMLFY 776
                 ************************************..7899*************98.89998999****9 PP

>> SSP160  Special lobe-specific silk protein SSP160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   6.1   1.6e-05     0.059     660     706 ..       6      58 ..       3     104 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.6e-05
      SSP160 660 yeaayqncvd......pgsvpdeattttssttttttttttaaptttttkaana 706
                 ye+  qn  +      p ++  +a++tt++ttttttttt + p     k  n+
  CCD23377.1   6 YENYLQNSSSyhssslPITISTAAAATTTTTTTTTTTTTGSFPLNIIDKYNNT 58 
                 66666665441100004555666667777777777777777777777666554 PP

>> SelK_SelG  Selenoprotein SelK_SelG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   0.00025       0.9      21      77 ..      62     115 ..      54     126 .. 0.67
   2 ?   -1.5   0.0       1.1   4.1e+03      23      54 ..     235     266 ..     229     274 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00025
   SelK_SelG  21 itdffwgivnfivlFfqtLlspdlsknsnssssskkrrggggggggGp..rRrmGr.ggg 77 
                 +t ++ +++  i++++++ +s  l +nsn+  ss+     +g+gggG+  rR m r + +
  CCD23377.1  62 VTTLLLAVLIPIMVYYRSNISSALHNNSNYGPSSS-----SGNGGGGGimRRWMPRsS-Q 115
                 56666777777888889999998888884444443.....345555555699999953.3 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
   SelK_SelG  23 dffwgivnfivlFfqtLlspdlsknsnsssss 54 
                 +ff +i++ +   ++++ s+++++++++++++
  CCD23377.1 235 EFFQNILSELEKNLKSISSQNNKEEEEEKKEQ 266
                 56666666666667777666666666333333 PP

>> DUF3439  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   4.9   0.00018      0.66      35      64 ..      18      46 ..       2      79 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00018
     DUF3439 35 gsgkpvrsiicpttttttttttttmptttt 64
                 s  p+       ++ttttttttt  tt +
  CCD23377.1 18 SSSLPITISTAA-AATTTTTTTTTTTTTGS 46
                344454322222.22333333333334444 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  28.0    0.0027       9.5       1     297 [.     128     744 ..     128     748 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0027
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplrnlalshlakeckke.................hcL.lcElgflfdmldkakglncqasnFlralssipeasalg 81 
                 +GL n+ +++++Ns+LQ l+  ++l  ++   +++e ++e                 + L l El+  ++    +++   +++ +l+++++ p+++ l 
  CCD23377.1 128 AGLLNDGNTCFMNSVLQSLASSKELMDFLDTTIKQEQEQEqeqeqvgdekkedvdigFTLsLNELLSQLNAKYYKERPYFKTNKLLKTMKNAPNKNMLL 226
                 79************************999999998888888999*********999955526788888888888888899*************777776 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................ RF
       UCH_1  82 lileeeeetekssaislssliqsfnrflldqlekelketkkns........................................................ 124
                  + +e+++  +  ++ ls+l ++++ +  ++ ++e++e+k+++                                                        
  CCD23377.1 227 GYDQEDAQ--EFFQNILSELEKNLKSISSQNNKEEEEEKKEQEknsnecvkilkkdlpkdaiigqeqlgkvgtvyipteqiepntstalpssnpqekly 323
                 66666533..355566899999988888887777776666655999*****************************************999999988888 PP

                 ................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 125 ................................................seeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsnekkea 175
                                                                  + ++ +++ ++ ++ + ++c++C  e  +++ +  l+  y   +n+++e 
  CCD23377.1 324 tpfklitpldgisaerigclqcgenggirysvfsglslnlpnenigmtLKLSNLLNEWIKPEIIDGVECNRCALEAIKSHLLDQLEQ-Y---HNNSTEI 418
                 887777777777777777777777777777777777777777777777666677777777777777777777777777777666644.3...2223333 PP

                 xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxx.xx.xxxxxxxx....................... RF
       UCH_1 176 kvtfasilksslerektt..rawCekCkryqpteqrktvk...........nlPpvLalnakle.ee.eelelwkt....................... 236
                  +++ + +k  +e  +++  +++ ++ + y+ +++++ v+           + Pp+L+++ +++  + ++++                           
  CCD23377.1 419 PQKLIDAVKDRVECLQKIlsKPVIDE-EDYKKLHTENMVRkcskskqilisRPPPLLSIHINRSvFDvRTYQ---Irknnsrvlfksklnlepwtcdid 513
                 33344444444443222111333333.44444444444444444444444489*********9977742233...123577788888999999999*** PP

                 ................................................................................................... RF
       UCH_1 237 ................................................................................................... 236
                                                                                                                    
  CCD23377.1 514 einldarlpmskkesslgqdefseddeattngeyynrlhqkyqqefedssdedddsddneiysmdnnrrrtrkdvrnydplngeiedsssvyssadekd 612
                 *************************************************************************************************** PP

                 ............................................................xxxxxxxxxxxxxxxxxx............xxxxxxxxx RF
       UCH_1 237 ............................................................knwlpleiklsldedknl............eeklkeere 263
                                                                             ++ lp++  l  +e+++                ++ +++
  CCD23377.1 613 thdsieetdslgntirkrvikqetferaedsiekenegaeanhdddnddnndeqehkgnnDDELPSSSPLAASEEEEDgevqetslspsgAIPQTIRKK 711
                 *********************999999999999999999999999999999999999997577777777766666666888999999998444444444 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 264 kakaekeikvYeLqsvvvhigdskesghLvslvk 297
                  ++++ +  +Y+L+sv+vh g +++ gh++++ k
  CCD23377.1 712 FDSTPIGPLTYSLRSVIVHYG-THNYGHYIAFRK 744
                 467899***************.556******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3233  (0.180322); expected 358.6 (0.02)
Passed bias filter:                      873  (0.0486921); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        42  (0.00234257); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.23u 0.34s 00:00:01.57 Elapsed: 00:00:00.51
# Mc/sec: 5057.24
//
Query:       CCD23378.1  [L=499]
Description: hypothetical protein NDAI_0B03440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.5e-55  183.4   1.9      1e-18   66.9   0.0    3.6  4  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    3.5e-10   39.6   0.0    0.00057   19.7   0.0    3.4  3  RRM_occluded  Occluded RNA-recognition motif
    1.8e-09   37.3   1.9    1.8e-05   24.3   0.5    2.8  3  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
     0.0011   18.9   0.2      0.075   13.0   0.0    3.0  3  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
     0.0011   19.0   0.1       0.25   11.5   0.0    3.8  4  RRM_7         RNA recognition motif
     0.0059   16.6   0.1       0.79    9.8   0.0    2.6  2  DbpA          DbpA RNA binding domain
  ------ inclusion threshold ------
      0.044   13.8   0.1          2    8.5   0.0    3.0  3  RNA_bind      RNA binding domain
      0.075   12.8   0.8       0.15   11.9   0.8    1.4  1  Robl_LC7      Roadblock/LC7 domain
       0.19   11.8   2.0       0.78    9.9   0.1    2.5  3  Limkain-b1    Limkain b1


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.2   6.4e+03      37      54 ..      23      40 ..      20      55 .. 0.56
   2 !   66.7   0.3   5.8e-22   1.2e-18       1      70 []      89     158 ..      89     158 .. 0.98
   3 !   66.9   0.0   5.1e-22     1e-18       1      70 []     177     247 ..     177     247 .. 0.99
   4 !   47.1   0.0   7.6e-16   1.5e-12       2      70 .]     369     432 ..     368     432 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.2
                SEEEEEEEEESSHHHHHH CS
       RRM_1 37 kskgfafVeFeskedAek 54
                +s+  a +e  ++e+A+ 
  CCD23378.1 23 SSTASAAIEHVQEEQATT 40
                455556666666666655 PP

  == domain 2  score: 66.7 bits;  conditional E-value: 5.8e-22
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 l+VgnL ++++e+ Lk++F+  G+i+++k++ d+++++ ++afVe+ ++ dA+ Al++lng +++++ +k
  CCD23378.1  89 LYVGNLDKSINEDLLKQYFQVGGQITDVKIMVDKKNQNVNYAFVEYLKSHDANVALQTLNGIQIENKIIK 158
                 8*****************************************************************9875 PP

  == domain 3  score: 66.9 bits;  conditional E-value: 5.1e-22
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 lfVg+L+ dv++e+L+  F++f ++  + ++ d +t +s+g++fV F+++++A++A+++++gk+++gr+++
  CCD23378.1 177 LFVGDLNIDVDDETLSSNFKNFPSYIQAHVMWDmQTSRSRGYGFVSFADRDQAQNAMDTMQGKEINGRPIR 247
                 8*******************************************************************996 PP

  == domain 4  score: 47.1 bits;  conditional E-value: 7.6e-16
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 ++gn+p+ +te +L  l++ fG i +++ +++     kg++f++++++e+A+ ++ al +  ++gr+l+
  CCD23378.1 369 YIGNIPHFATEADLIPLLQTFGFILDFSHYPE-----KGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 432
                 9******************************8.....*****************************986 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   5.9e-05      0.12       2      70 ..      87     159 ..      86     162 .. 0.87
   2 ?    3.3   0.0     0.039        77      42      70 ..     220     248 ..     210     252 .. 0.92
   3 !   19.7   0.0   2.9e-07   0.00057      12      71 ..     376     434 ..     366     438 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.9e-05
  RRM_occluded   2 rtisllplsDtvnkariralveekegeikkivLvpdheG.....AivefkdekiagkasLaLdgsefegkklrc 70 
                   r++ + +l   +n++ +++ ++   g+i+++ ++ d++      A+ve+ ++++a  a+  L+g+++e+k +++
    CCD23378.1  87 RVLYVGNLDKSINEDLLKQYFQVG-GQITDVKIMVDKKNqnvnyAFVEYLKSHDANVALQTLNGIQIENKIIKI 159
                   788888999999999999999999.*****99998875444444***************************986 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.039
  RRM_occluded  42 ivefkdekiagkasLaLdgsefegkklrc 70 
                   +v f+d+ +a  a+  ++g+e++g+ +r+
    CCD23378.1 220 FVSFADRDQAQNAMDTMQGKEINGRPIRI 248
                   68999*999999999************97 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 2.9e-07
  RRM_occluded  12 tvnkariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklrcG 71 
                     ++a +  l+++  g i +    p++++++++++ +++a+ ++ aL +  f+g++lr+G
    CCD23378.1 376 FATEADLIPLLQTF-GFILDFSHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 434
                   55566666677777.889999999***********************************9 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.5   9.2e-09   1.8e-05      12     112 ..      76     177 ..      62     181 .. 0.80
   2 !   11.0   0.0   0.00012      0.24      64     103 ..     216     255 ..     182     277 .. 0.76
   3 ?   -2.5   0.0       1.8   3.7e+03      69     103 ..     406     440 ..     400     456 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 9.2e-09
       RRM_5  12 vaatgspgaag.vaegsVllVyglepdkvnldklFnlfclYgnvervkflktkke....talvqmgdasaveravqHLnnaklfgk..rlevalSKqqa 103
                 +a     ++ g  ++  Vl V +l++  +n d l   f + g++  vk++  kk+    +a+v+   + +++ a+q Ln++++ +k  +++ a+  qq+
  CCD23378.1  76 SA-----THGGrETSDRVLYVGNLDK-SINEDLLKQYFQVGGQITDVKIMVDKKNqnvnYAFVEYLKSHDANVALQTLNGIQIENKiiKINWAFQSQQN 168
                 22.....2333145678999****96.69*********************99985333379**********************9998888889999999 PP

       RRM_5 104 vsekepfel 112
                 + +++ f+l
  CCD23378.1 169 LNSNDTFNL 177
                 988888876 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00012
       RRM_5  64 ketalvqmgdasaveravqHLnnaklfgkrlevalSKqqa 103
                 +++ +v  +d  +++ a++ ++++++ g+++++    +++
  CCD23378.1 216 RGYGFVSFADRDQAQNAMDTMQGKEINGRPIRINWATKRE 255
                 68999************************99998765555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.8
       RRM_5  69 vqmgdasaveravqHLnnaklfgkrlevalSKqqa 103
                 ++     ++  ++  L n +  g++l+    K+++
  CCD23378.1 406 IKYDTHEQAAVCIVALANFPFQGRNLRTGWGKERT 440
                 55566778889999999999999999988888765 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.8e-05     0.075      19      53 .]     104     144 ..      95     144 .. 0.85
   2 ?    1.1   0.0       0.2     4e+02      34      52 ..     214     232 ..     194     233 .. 0.81
   3 ?    0.4   0.0      0.34   6.7e+02      21      50 ..     386     415 ..     376     416 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.8e-05
  Nup35_RRM_2  19 e.hFasfGeIvkhyvp.....kevsvmyvkfesekdaekAL 53 
                    +F++ G+I++  +      ++v++++v++ ++ da+ AL
   CCD23378.1 104 KqYFQVGGQITDVKIMvdkknQNVNYAFVEYLKSHDANVAL 144
                  449********9555555*9999****************98 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
  Nup35_RRM_2  34 kevsvmyvkfesekdaekA 52 
                  +++ + +v f+++++a+ A
   CCD23378.1 214 RSRGYGFVSFADRDQAQNA 232
                  5677899*********998 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.34
  Nup35_RRM_2  21 FasfGeIvkhyvpkevsvmyvkfesekdae 50 
                  ++ fG I +++  +e+   ++k+ +  +a+
   CCD23378.1 386 LQTFGFILDFSHYPEKGCCFIKYDTHEQAA 415
                  6779999997777799*******9988876 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.54   1.1e+03       4      28 ..      89     113 ..      86     142 .. 0.78
   2 !   11.5   0.0   0.00012      0.25       4      34 ..     177     210 ..     174     243 .. 0.67
   3 ?   -2.6   0.0       3.1   6.2e+03      27      44 ..     245     262 ..     241     274 .. 0.68
   4 ?    1.8   0.0      0.14   2.7e+02       5      38 ..     369     401 ..     366     421 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.54
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkv 28 
                 ++vG l   i+e+ lk+ f+  g++
  CCD23378.1  89 LYVGNLDKSINEDLLKQYFQVGGQI 113
                 6899999999999999999877765 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00012
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkv...lvdwPk 34 
                 +FvG l iD+++e l++ fk+f +     v w  
  CCD23378.1 177 LFVGDLNIDVDDETLSSNFKNFPSYiqaHVMWDM 210
                 7******************998653000344433 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 3.1
       RRM_7  27 kvlvdwPkkaeskkkaae 44 
                 +++++w  k e++++++ 
  CCD23378.1 245 PIRINWATKRENNNNNHG 262
                 578999999777766543 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.14
       RRM_7   5 FvGGlPiDiteeelkatfkefgkvlvdwPkkaes 38 
                 ++G +P   te++l+  +++fg + +d+ + +e+
  CCD23378.1 369 YIGNIPHFATEADLIPLLQTFGFI-LDFSHYPEK 401
                 89*******************975.455544444 PP

>> DbpA  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.029        58      40      70 ..     128     159 ..     124     160 .. 0.84
   2 !    9.8   0.0    0.0004      0.79      47      70 ..     225     248 ..     220     249 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.029
                 S-EEEE.E-TT-HHHHHHHHTT--SSS----E CS
        DbpA  40 kfSfve.vpkekaeevlkalkkkkikGrkvrv 70 
                 +++fve +++ +a+ +l++l++ +i+++ +++
  CCD23378.1 128 NYAFVEyLKSHDANVALQTLNGIQIENKIIKI 159
                 7899994566678999***********99887 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0004
                 -TT-HHHHHHHHTT--SSS----E CS
        DbpA  47 pkekaeevlkalkkkkikGrkvrv 70 
                 ++++a+++++++++k+i+Gr++r+
  CCD23378.1 225 DRDQAQNAMDTMQGKEINGRPIRI 248
                 6899******************98 PP

>> RNA_bind  RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.17   3.4e+02      43      69 ..     128     155 ..      82     165 .. 0.68
   2 ?    8.5   0.0   0.00099         2      27      65 ..     196     239 ..     190     247 .. 0.83
   3 ?   -2.2   0.0       2.2   4.3e+03      22      59 ..     379     418 ..     372     424 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.17
                 TEEEEEEEEE-HHHHHHHHH.TT-SS-- CS
    RNA_bind  43 tsAfvaLhrrdqasvvlktl.kkeasyk 69 
                 + Afv   + + a+v+l+tl   + + k
  CCD23378.1 128 NYAFVEYLKSHDANVALQTLnGIQIENK 155
                 5689999999999999999854444445 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00099
                 HHTTTSEEEEEEEEETTE.....EEEEEEEE-HHHHHHHHHTT- CS
    RNA_bind  27 qlFspfGsvyvsWlddts.....AfvaLhrrdqasvvlktlkke 65 
                 + F ++ +++v W  +ts      fv+ + rdqa+ +++t++ +
  CCD23378.1 196 KNFPSYIQAHVMWDMQTSrsrgyGFVSFADRDQAQNAMDTMQGK 239
                 678889999****99998555556****************9644 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.2
                 HHHHHHHTTTSEEE..EEEEEETTEEEEEEEEE-HHHHHH CS
    RNA_bind  22 tsDivqlFspfGsv..yvsWlddtsAfvaLhrrdqasvvl 59 
                 + D++ l ++fG +  +  + +    f+    ++qa+v +
  CCD23378.1 379 EADLIPLLQTFGFIldFSHYPEKGCCFIKYDTHEQAAVCI 418
                 5688888888887622233444555666666666666655 PP

>> Robl_LC7  Roadblock/LC7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   7.3e-05      0.15      20      53 ..     304     338 ..     301     341 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.3e-05
                 EEETTS-EEEE.CCSSSS-HHHHHHHHHHHHHHHH CS
    Robl_LC7  20 vvskdGlviat.stldnddadqlAalasgllsaak 53 
                 + s dG++i + ++ ++ +++q+Aa+a+++++aa 
  CCD23378.1 304 LGSMDGIPIQMqQQQQQQQQQQVAAAAAAAAAAAA 338
                 5688*******999999999999999999999886 PP

>> Limkain-b1  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.37   7.3e+02      37      86 ..      21      69 ..       8      71 .. 0.80
   2 ?   -3.5   0.0       5.6   1.1e+04      17      37 ..      94     114 ..      88     118 .. 0.58
   3 ?    9.9   0.1   0.00039      0.78      44      85 ..     219     259 ..     205     262 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.37
  Limkain-b1 37 lsisgksavlrfanqeaaeralkrleneDvfGnritvsekprnkevneee 86
                 + s  sa +   ++e a   + + ++e+     i+  ek +n e +eee
  CCD23378.1 21 TESSTASAAIEHVQEEQATTETNQQDGEESNQTEIATEEK-GNGEEQEEE 69
                55678899999999**************999999999998.666666666 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.6
  Limkain-b1  17 lkkaiknrLrrLsdncGGkvl 37 
                 l k+i++ L + +  +GG++ 
  CCD23378.1  94 LDKSINEDLLKQYFQVGGQIT 114
                 345666655555556666665 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00039
  Limkain-b1  44 avlrfanqeaaeralkrleneDvfGnritvsekprnkevnee 85 
                   ++fa+++ a+ a+  +++ ++ G  i ++    ++e n++
  CCD23378.1 219 GFVSFADRDQAQNAMDTMQGKEINGRPIRINWA-TKRENNNN 259
                 579*************************99988.44554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2222  (0.123933); expected 358.6 (0.02)
Passed bias filter:                      647  (0.0360868); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.71u 0.32s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 3344.45
//
Query:       CCD23379.1  [L=371]
Description: hypothetical protein NDAI_0B03450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-14   52.0   0.0    9.8e-06   25.5   0.0    3.1  3  DFP       DNA / pantothenate metabolism flavoprotein


Domain annotation for each model (and alignments):
>> DFP  DNA / pantothenate metabolism flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   5.5e-10   9.8e-06       4      56 ..      75     129 ..      72     149 .. 0.86
   2 !    3.1   0.0    0.0042        76      82     107 ..     202     230 ..     173     241 .. 0.70
   3 !   19.7   0.0   3.2e-08   0.00058     108     175 ..     257     326 ..     232     336 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 5.5e-10
                 -EEEEEES-EEEECC..TTEEEEE----HHHHHHHHHHHHTT-EEEEEE-S-SS- CS
         DFP   4 kkvlvtaGpTrEaiD..pVRfisNrSSGkmGyalAeaaaarGaeVtlvsgpvsle 56 
                 k vl+t+G+T  ++    VRfi N S G+ G++ Ae+++  G +V + + + sl+
  CCD23379.1  75 KIVLITSGGTTVPLEnnTVRFIDNFSAGTRGASSAEQFLLNGYSVIFLHREFSLT 129
                 679**********97336******************************9998776 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0042
                 T-.SEEEE---S--EEE..S--------- CS
         DFP  82 ea.divimaAAvaDyrp..keaaeeKikk 107
                 ++  ++  aAAv+D+ +  ++  e+Ki+ 
  CCD23379.1 202 STgSLFYLAAAVSDFFIpfSRLPEHKIQS 230
                 33478899******976456666777765 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 3.2e-08
                 ----..----EEE---HHHHHHHC-S.S-EEEEEEE-S.S.-HHHHHHHHHHHTT-SEEEEEEGGGTTGG CS
         DFP 108 eeeeeeltleleknpdilaelaekkkkkqllvGFaaet.e.ellenareklerkgldlivaNdvskeeag 175
                 ++ e +l ++l + p+ l++l e+ +++ +lv F++et +  l+e+++  l r + +l++ N ++++++ 
  CCD23379.1 257 TTPEGQLIINLDPVPKFLRRLVESWATQAMLVSFKLETdQsILIEKSTFALDRYNHQLVIGNLLQTRHKE 326
                 244456779************988888889********546799******************99987443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2851.30
//
Query:       CCD23380.1  [L=364]
Description: hypothetical protein NDAI_0B03460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-74  250.9   7.0    1.6e-74  250.6   7.0    1.1  1  Sds3      Sds3-like


Domain annotation for each model (and alignments):
>> Sds3  Sds3-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.6   7.0   8.8e-79   1.6e-74       2     217 ..      22     342 ..      21     343 .. 0.95

  Alignments for each domain:
  == domain 1  score: 250.6 bits;  conditional E-value: 8.8e-79
        Sds3   2 leklskiessFaelRDklYrerLteLqteltllqqGthpellrklrdleeerDaeLkrlrlreeyqlkriekefkadiekakqeheklvkllkeklyee 100
                 ++k+ski+++F+++RD +Y++rLt+Lq +lt+l++Gt+p llr +rdleeerD++L+rlr++eey+++r+++ef++die+ak +hekl+kl+kekly+ 
  CCD23380.1  22 ETKVSKIHHNFINDRDVHYKDRLTSLQLNLTTLHDGTNPLLLRGIRDLEEERDLDLVRLRFFEEYRVSRSSIEFQEDIERAKMDHEKLIKLCKEKLYSI 120
                 78************************************************************************************************* PP

        Sds3 101 lekkikrLkeeklllDlanansl..........kktrshta......g...........lanesatstepvelltdrrslr.................. 154
                 +++kik+Lkee+ll+D+an +s+          k+trsht+      +           +anesat+t     + +rrslr                  
  CCD23380.1 121 IDNKIKNLKEERLLMDVANVHSYsmdysrpyyhKNTRSHTTtgaasvQqqsgwesssndMANESATDT-----GLERRSLRrrlgttrggdddgdtfig 214
                 *****************************************977666156677776666778877777.....99************************ PP

        Sds3 155 ............................................................tnsdsdflqelsdleeLqallfggepg.....kenkekk 188
                                                                              +sdsdflq +sd++eLqallfgg+ +     k++ e+k
  CCD23380.1 215 grgrkgkqqqqhfttgntgdnnnntdesdfqtgystgtwtgtiakqktnsnnntngyktgISSDSDFLQGISDHAELQALLFGGKSAngaaaKSTAENK 313
                 ************************************************************99*****************************96666666 PP

        Sds3 189 krkastrestksapglqslkeeevneDla 217
                 ++  s+r+stksap+l sl+++e++eD++
  CCD23380.1 314 RKYRSQRYSTKSAPPLGSLTTDEITEDIN 342
                 67777**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       895  (0.0499191); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2869.93
//
Query:       CCD23381.1  [L=519]
Description: hypothetical protein NDAI_0B03470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-85  284.6  26.9    2.5e-56  191.3  14.5    2.2  2  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.3  14.5   1.4e-60   2.5e-56      47     233 ..      66     253 ..      28     304 .. 0.86
   2 !   98.6   5.0   2.2e-32   3.9e-28     236     324 ..     323     413 ..     297     414 .. 0.83

  Alignments for each domain:
  == domain 1  score: 191.3 bits;  conditional E-value: 1.4e-60
  Glyco_transf_15  47 grkPiedenenAtllalvrnselakilrsikkvekrFnkkfnYpyvfindepftekfkekieklveeadvefgeipkeewsyPefidee.kaak 139
                      +  P + ++ n t+++l rn+el+++++++k++e++Fn+ f+Ypyvf+nd pft++f+ +ie+l++ ++v fg+i +  w++P+ + e+ + ++
       CCD23381.1  66 LEDP-SYKKMNSTFVMLTRNEELQDVIKTMKSIESHFNQWFQYPYVFLNDIPFTNEFQLEIENLTQ-SKVYFGTIDELDWEFPKEVRESfEFKN 157
                      3334.34445********************************************************.****************98876526688 PP

  Glyco_transf_15 140 areelad..iaygdsesyrhmcRyysGlfykhellkkydyYwRvePdiklycdieyDvfkymkdekkiygFtlslkeieetiktlWdstkkflk 231
                      a+e+ ad  ++yg++esy+ mcR+ysG+fykh+l+k++++YwR+ePd++++cdi yD f  m++ +k+ygFt+ ++e   t+++l+  tk+f++
       CCD23381.1 158 ALEDQADrgVMYGSMESYHKMCRFYSGIFYKHPLMKQFEWYWRIEPDVDFFCDITYDPFWEMHQRGKKYGFTIFISELYWTVPNLFRVTKSFIN 251
                      99999999*************************************************************************************9 PP

  Glyco_transf_15 232 en 233
                      ++
       CCD23381.1 252 DF 253
                      84 PP

  == domain 2  score: 98.6 bits;  conditional E-value: 2.2e-32
  Glyco_transf_15 236 fieeknsls..flsdddqdtynlCeFwsnfeigdldffrseayekfFeylDskGgffYerWgdapvhsiavslllpkdkihffedigyshd 324
                      +i++ +s+   f ++ d++++nlC+Fwsnfei+ ld f ++ y+++F+yl+s Ggf+ erWgdap+hs+++ l l+ +++h+f+digy h+
       CCD23381.1 323 LISKAQSKIpiFEDKFDEEEFNLCHFWSNFEIARLDVFDNDVYNSYFQYLESYGGFWSERWGDAPIHSLGLGLTLNLEDVHYFRDIGYRHS 413
                      4554443331144455677*********************************************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 4083.43
//
Query:       CCD23382.1  [L=103]
Description: hypothetical protein NDAI_0B03480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-09   37.6   0.1    2.2e-09   37.4   0.1    1.2  1  CENP-T_C       Centromere kinetochore component CENP-T histon
    1.4e-05   25.4   0.2    1.7e-05   25.2   0.2    1.2  1  Histone        Core histone H2A/H2B/H3/H4
    1.9e-05   24.9   0.1    3.2e-05   24.1   0.0    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    2.5e-05   24.4   0.1    3.4e-05   23.9   0.1    1.3  1  TAF            TATA box binding protein associated factor (TA
    0.00016   22.0   0.1    0.00022   21.6   0.1    1.4  1  CENP-S         CENP-S protein
     0.0028   17.7   0.0     0.0034   17.4   0.0    1.1  1  TFIID-31kDa    Transcription initiation factor IID, 31kD subu
     0.0093   16.0   0.0      0.013   15.5   0.0    1.2  1  Bromo_TP       Bromodomain associated
  ------ inclusion threshold ------
      0.049   14.1   0.0      0.081   13.4   0.0    1.4  1  TFIID_20kDa    Transcription initiation factor TFIID subunit 


Domain annotation for each model (and alignments):
>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1     1e-12   2.2e-09      17      79 ..      34      96 ..      18      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1e-12
    CENP-T_C 17 akrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79
                a r   ++g  ++++   ++ +  +++ f+e v +D  +y++Ha+RKt+ + Dv+  +krq++
  CCD23382.1 34 AIRRLARRGGVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96
                444444456777999999*******************************************86 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.2   7.5e-09   1.7e-05      78     129 ..      41      92 ..      16      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 7.5e-09
                 TSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  78 ekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 ++  +ris+   + + ++l+ +l+++  +A  +++haKR+T+t+ D+  A++
  CCD23382.1  41 RGGVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92 
                 5666777777777788999****************************99987 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.4e-08   3.2e-05       8      65 .]      35      91 ..      28      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.4e-08
                   HHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  8 vkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   ++++ +   ++++i+    e +  ++++f+e++ + A+ +++++krKt++  ++  A+
     CCD23382.1 35 IRRLARRG-GVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYAL 91
                   77888888.888999999999999*****************************98876 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.5e-08   3.4e-05       5      66 .]      31      92 ..      27      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.5e-08
                -HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  5 pkesvkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                +k +++ +A   G++ +s    +++   ++  l  ++++a+ +++h+kR++ t+ Dv +AL+
  CCD23382.1 31 TKPAIRRLARRGGVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92
                66677888888888888877777777778888999*************************98 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   9.6e-08   0.00022      41      73 ..      62      94 ..      21      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 9.6e-08
      CENP-S 41 qlenlakDLeaFakHAkRstittdDvlLlaRrn 73
                 le++ +D  ++ +HAkR+t+t  Dv+  ++r+
  CCD23382.1 62 FLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                3889999*******************9998885 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06    0.0034      13      70 ..      37      94 ..      31     101 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-06
  TFIID-31kDa 13 liLaslgvteyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAiqsr 70
                  + +  gv+ ++  +++ +  +   +  sv++dA ++ ehak+k+v+  dv  A++ +
   CCD23382.1 37 RLARRGGVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                 55566678888888888888889999*************************9998865 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     6e-06     0.013      33      70 ..      56      93 ..      43      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6e-06
                HHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHH CS
    Bromo_TP 33 teiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70
                + +++++++++ ++a  + eha R ++t  Dvv +L++
  CCD23382.1 56 RAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93
                678999******************************97 PP

>> TFIID_20kDa  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.6e-05     0.081      30      65 ..      59      94 ..      43      95 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHHH CS
  TFIID_20kDa 30 addFvesvtkfacklakhRksdklevrDiqlhlern 65
                    F esv+  a+    h k +++ + D+ + l+r+
   CCD23382.1 59 LKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                 567*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 778.01
//
Query:       CCD23383.1  [L=136]
Description: hypothetical protein NDAI_0B03490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-49  166.7   3.4    3.4e-49  166.5   3.4    1.0  1  Histone         Core histone H2A/H2B/H3/H4
      2e-06   28.1   0.0      3e-06   27.5   0.0    1.2  1  CENP-S          CENP-S protein
    5.5e-05   23.8   1.3    6.9e-05   23.5   1.3    1.2  1  PAF             PCNA-associated factor histone like domain
    0.00011   22.3   0.8    0.00015   21.9   0.1    1.6  2  CENP-T_C        Centromere kinetochore component CENP-T histo
     0.0018   18.5   0.9     0.0023   18.2   0.1    1.6  2  CBFD_NFYB_HMF   Histone-like transcription factor (CBF/NF-Y) 
  ------ inclusion threshold ------
      0.035   14.2   0.2      0.058   13.5   0.0    1.5  2  TFIID-31kDa     Transcription initiation factor IID, 31kD sub


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.5   3.4   1.1e-52   3.4e-49       1     131 []       1     132 [.       1     132 [. 0.99

  Alignments for each domain:
  == domain 1  score: 166.5 bits;  conditional E-value: 1.1e-52
                 XXEESXEEEXXXXEEXXXXXXXXXXHT.TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHH CS
     Histone   1 marekekarkesektapekkvsakker.kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEa 98 
                 mar+k++ark+++++ap+k++++k +r +a+s+   kk++ry+pgtval+eir+ qkst+lli+klpf+R+vrei +++k+dlr++++a+ alqe +Ea
  CCD23383.1   1 MARTKQTARKSTGGKAPRKQLASKAARkSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEA 99 
                 9************************************************************************************************** PP

                 HHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  99 llvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                 +lv+lfe++nl+a+haKRvTi++kDi+lArrlr
  CCD23383.1 100 YLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLR 132
                 *******************************97 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     1e-09     3e-06      13      71 ..      70     130 ..      65     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1e-09
      CENP-S  13 kiveeeaa..ekeveatkqfiaaltelvykqlenlakDLeaFakHAkRstittdDvlLlaR 71 
                 ++v+e+a+  ++++++ +++i+al e v + l +l +D ++ a HAkR ti+++D++L  R
  CCD23383.1  70 RLVREIAQdfKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARR 130
                 556665442366778999***************************************9876 PP

>> PAF  PCNA-associated factor histone like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   1.3   2.3e-08   6.9e-05       1      62 [.       1      58 [.       1      78 [. 0.89

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.3e-08
         PAF  1 mVRTkAdvssarkavaakAprkslgassssssssssspkkkkkkyvGGNpvcpRptPaWQKp 62
                m RTk ++   rk  ++kAprk+l+++   +s+ s++  kk + y +G  v  R++   QK 
  CCD23383.1  1 MARTKQTA---RKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPG-TVALREIRRFQKS 58
                99******...****************999999999988888888888.6888888888885 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.4   7.3e+03      14      25 ..      19      30 ..      14      39 .. 0.59
   2 !   21.9   0.1   4.9e-08   0.00015      11      75 ..      70     129 ..      59     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
    CENP-T_C 14 kklakrfakasg 25
                k+la+++a++s+
  CCD23383.1 19 KQLASKAARKSA 30
                445555555544 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 4.9e-08
    CENP-T_C  11 avvkklakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmk 75 
                  +v+ +a++f     +  + + +a+ al+++ + ++  + eD +  a Ha+R ti+++D+ l  +
  CCD23383.1  70 RLVREIAQDF----KTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKL-AR 129
                 3455666666....56799****************************************864.44 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       4.8   1.4e+04      39      46 ..      20      27 ..      19      29 .. 0.58
   2 !   18.2   0.1   7.6e-07    0.0023       2      64 ..      65     128 ..      64     128 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.8
                   HHHHHHHH CS
  CBFD_NFYB_HMF 39 elaseAae 46
                   +las+Aa+
     CCD23383.1 20 QLASKAAR 27
                   46666664 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 7.6e-07
                    XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklA 64 
                    +LP  r  + + +d + + ++ ++A   ++e+ve ++ +l + ++  + ++kr ti++++iklA
     CCD23383.1  65 KLPFQRLVREIAQDfKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLA 128
                    78888887777777799999******************************************98 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.5   7.6e+03      73      90 ..      10      27 ..       4      31 .. 0.63
   2 ?   13.5   0.0   1.9e-05     0.058      22      67 ..      84     129 ..      67     136 .] 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.5
  TFIID-31kDa 73 kqfkepppkelLlelAae 90
                 k+  ++ p++ L + Aa+
   CCD23383.1 10 KSTGGKAPRKQLASKAAR 27
                 455556777777776654 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.9e-05
  TFIID-31kDa  22 eyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAi 67 
                   +++  +  L + +  y +s++ed ++ a hak+ +++ +d++lA 
   CCD23383.1  84 RFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLAR 129
                  577888889999999*****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1033.36
//
Query:       CCD23384.1  [L=161]
Description: hypothetical protein NDAI_0B03500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-39  133.2   1.9    6.2e-39  132.9   1.9    1.1  1  Aim19     Altered inheritance of mitochondria protein 19


Domain annotation for each model (and alignments):
>> Aim19  Altered inheritance of mitochondria protein 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9   1.9   3.5e-43   6.2e-39       2     115 .]      28     156 ..      27     156 .. 0.98

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 3.5e-43
       Aim19   2 sespypawalsalllaslllsvkksaal..............kl.sklallkpsklsvllfgaafalggymiydgDlenGsGfltAWSllYllvngkks 85 
                 +++p+pa+++++l++a+++ls++ ++a+              ++ s++++++ s++++llfgaa+alg+ m++dgD+enGsGf+tAWS+l+l+vngk+s
  CCD23384.1  28 TNTPLPAIINAGLIFATPVLSPQFKTAIstttsgavpflskgRTsSTNKYIGLSNKNILLFGAAQALGAKMLSDGDIENGSGFVTAWSILFLIVNGKRS 126
                 68*********************999999*************7779***************************************************** PP

       Aim19  86 ikslrrgkvvPlaLsalalanavlyGkrff 115
                 ++sl+++k++P++L++ +l+n++lyGkrf+
  CCD23384.1 127 LNSLKVTKIWPMVLCVGSLGNSILYGKRFI 156
                 ****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1144.70
//
Query:       CCD23385.1  [L=496]
Description: hypothetical protein NDAI_0B03510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.8e-113  377.5  22.1   8.7e-113  377.1  22.1    1.1  1  Aa_trans  Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.1  22.1  4.9e-117  8.7e-113       2     409 .]       4     483 ..       3     483 .. 0.94

  Alignments for each domain:
  == domain 1  score: 377.1 bits;  conditional E-value: 4.9e-117
    Aa_trans   2 tssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlg...yrllGpkgkliidlailvqlfGv 97 
                 t+++ s+++nl+k+ivGaG+La+PyAf+++G++vG +l+ll+a+ s ++l++L+kcsktl+ ++rn+s++ ++   y+ l+p    ++dla+++q+fGv
  CCD23385.1   4 TATVSSSIINLVKTIVGAGLLAIPYAFRSDGILVGTLLTLLAAINSGFGLFILAKCSKTLI-NPRNSSFFSICmltYPSLSP----LFDLAMIIQCFGV 97 
                 78999*******************************************************9.9**********888888888....************* PP

    Aa_trans  98 gvsyliligdllpaifesffdtlllsnvyfilisaliiipLslipnlskLsylSllalvsslyy....ivilvlvvaelvklelkgvseetv.....kk 187
                 g+syl+ligd +p +f++       ++ y+i+ sa+ii+pLs +++l++L+y+S+++l++++y+     v++ ++++ +++ e+ ++            
  CCD23385.1  98 GLSYLVLIGDIFPGLFGG-------HRDYWIISSAFIIVPLSCLKKLDSLKYSSIVGLFALAYLsmfiFVMFLHNTVFKLPNEGDST----RgevywFH 185
                 *****************9.......799**********************************9974443333333333333333333....23445644 PP

    Aa_trans 188 asklkglflaigiivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlils 286
                   ++ gl+++++ii+FA+tg+++l++++ el+d s+ ++++ v++ sii++t l++lvG +GYltFG++v+gni+ln++++s +i i++++l+++lils
  CCD23385.1 186 VYDFRGLLSTFSIIIFAYTGAMNLFSMIRELEDISM-QNIKNVINGSIIISTGLFLLVGISGYLTFGSNVEGNIILNYNPNSNWIYIGKFCLGTMLILS 283
                 56677****************************999.99************************************************************ PP

    Aa_trans 287 fplqlhplrqvvenllikk...............................................................................e 306
                 fpl++hplr +v+nl+ +                                                                                 
  CCD23385.1 284 FPLLFHPLRIAVNNLVVWMkmtvdgdlgnngkncnvnpsllnnnnnnnnngvtmpitlnvsddiadevedesilqnittttptprgsieqlpdnvsvkT 382
                 *************************************************************************************************88 PP

    Aa_trans 307 avagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlkliktekksleklvkkkildlicivlglllvfygla 405
                   + + e+ea +  ++++ i+++l++++y+iAl v s+a vl+l+Gat+st++sfilP+lf++kli+t++ +++++v+ +  d+++++l+lllvf+gla
  CCD23385.1 383 VLEEQEEEEAAFPDTRFYGITAFLLIVMYIIALNVKSFALVLALIGATGSTSISFILPGLFGYKLIGTDSLAIGQMVPLR--DRLYKRLSLLLVFFGLA 479
                 8888999999999****************************************************************876..***************** PP

    Aa_trans 406 vlil 409
                 v+il
  CCD23385.1 480 VMIL 483
                 **96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3292.56
//
Query:       CCD23386.1  [L=501]
Description: hypothetical protein NDAI_0B03520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.7e-159  530.2  27.5   4.2e-159  530.0  27.5    1.0  1  ICE2      ICE2


Domain annotation for each model (and alignments):
>> ICE2  ICE2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  530.0  27.5  2.4e-163  4.2e-159       1     405 [.      11     492 ..      11     493 .. 0.90

  Alignments for each domain:
  == domain 1  score: 530.0 bits;  conditional E-value: 2.4e-163
        ICE2   1 rvllstlyLllvvltiPlafdvGGlecGLafsltlfllYfvlttlkllarrss.rlr.llasllyylqhlvipsLLilfLsrfseda........skve 89 
                 r++++++yLl ++++iP++f++GGl+cGLaf+ tlf++Yf++ttl+llar+   ++  +l+ +lyy+qhl+i+sLL+lfLs fs++         +++ 
  CCD23386.1  11 RTFSAAFYLLFTLISIPISFKIGGLQCGLAFTATLFTIYFLSTTLSLLARKYGsNFSiFLTGFLYYSQHLIIASLLYLFLSGFSHEDltiplsddTQKV 109
                 6799***********************************************964554599************************994455566664444 PP

        ICE2  90 etllev...........kslseyleklvvkpWkklLsnstpvftllEGfcslLvIQaigqitrwlvnrkrsdswlilllvlsgsvitsalYfLyriyvf 177
                 +++++v           ++l++ +++++v+pWk+lLs+stp+ftl+EGf+++L+IQa+g++++wlvn+ +s++w+i++l++sg+vit++lY+Lyriyv+
  CCD23386.1 110 DIISDVvrrnlsstnsnWNLYHNYYTFFVQPWKYLLSYSTPFFTLSEGFFTILAIQAVGETNKWLVNEINSNTWIISSLLTSGGVITASLYYLYRIYVT 208
                 444444666777778889999999*************************************************************************** PP

        ICE2 178 p..eisvvdasllGvtltlvvflglyGivsgkGsviEsSLlfaYivlciYeifpdlsesateellellkettqneqkelpk.................. 256
                 p  ++s+++asllG+tl+lv +lglyGiv++kGsviEsSL+faYiv+ciYei+p+l+++at+e+le++ke++q++q +lp+                  
  CCD23386.1 209 PiwQLSIQTASLLGFTLSLVGGLGLYGIVTEKGSVIESSLFFAYIVRCIYEISPKLATTATDEILEIFKEVWQRHQGNLPTtdnllfyynnfvlrhidm 307
                 *********************************************************************************777777777777777777 PP

        ICE2 257 .....................lppiil.................asiskllkslssslpsslkeilef.lkaaietitpsvlisLayRilvfYaatrIi 316
                                      +                      ++i+kl+k++++s+pss++e++ + +++a e+++p+v+i+L++R+l+fY+atrIi
  CCD23386.1 308 lwellvskinqndpnntlpssF----NinflttflskdlllricKPIWKLFKNFTVSVPSSISELVLVtYQMARESVSPAVVINLCFRVLIFYSATRII 402
                 6666555555555555555550....055555555555556666***********************999***************************** PP

        ICE2 317 PalresgaralsqpeledsekaskilkllylyspciliavYthLllqysgelkkelklwgles.........ivveswkfwnWvnifltlllYavELi 405
                 Pal++++++        + +k+++i+k+ly+yspc+lia+YthL+lqysgelkk+l+lwg++          ++v+sw fwnW+nif+t+++Ya+EL+
  CCD23386.1 403 PALQRRNDS--------ELKKSRRIMKILYWYSPCVLIAMYTHLILQYSGELKKDLCLWGCNLkwlipnqpeLIVDSWGFWNWCNIFFTIIIYASELF 492
                 ****99886........46789***************************************989********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3403.78
//
Query:       CCD23387.1  [L=739]
Description: hypothetical protein NDAI_0B03530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.6e-203  676.1   9.3   3.5e-203  675.7   9.3    1.1  1  UTP25     Utp25, U3 small nucleolar RNA-associated SSU proces
    0.00011   22.0   0.2       0.48   10.2   0.1    2.7  3  DEAD      DEAD/DEAH box helicase
  ------ inclusion threshold ------
       0.02   14.6   0.3      0.058   13.2   0.3    1.7  1  DUF2538   Protein of unknown function (DUF2538)


Domain annotation for each model (and alignments):
>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  675.7   9.3  5.8e-207  3.5e-203       1     473 []     266     738 ..     266     738 .. 0.99

  Alignments for each domain:
  == domain 1  score: 675.7 bits;  conditional E-value: 5.8e-207
       UTP25   1 telqkellsilfsYkDllyeekslk.deeevrklyalHalnHvlktrdrvlknneklaklkessddlelrdqgftrpkvLillptreaalevvelllkl 98 
                 t+lqkell+++f+YkD+lye++s+  de+e+r+lyalHalnHv+ktrdr+lknn++l+    ++ d+e++dqgftrpkvLi++ptr++a+ev ++++k 
  CCD23387.1 266 TPLQKELLDPMFQYKDILYEYDSYGkDEDEYRDLYALHALNHVYKTRDRILKNNQRLQ----DNTDTEYLDQGFTRPKVLIVVPTRDTAYEVTDKIIKK 360
                 579*********************989*******************************....67899******************************** PP

       UTP25  99 leaetqvenkkrFkdefseeeeesseskpkdfqalFkgNtddaFrlGlkftrkslklyskfyssdiiiaSPlglrliieeedkkkrdtdfLsSiEvliv 197
                 ++ + qv++k +F d+f++++  +++skpk+fq++FkgNt+d+F+lGlkftrk++klys+fy+sdii++SPlg+++i+e++dkkkr++dfLsSiE+liv
  CCD23387.1 361 SGLD-QVDKKGKFYDQFKDDSL-PPSSKPKSFQQIFKGNTNDFFVLGLKFTRKAIKLYSNFYQSDIIVCSPLGMQMIVENTDKKKRQDDFLSSIELLIV 457
                 ****.****************9.999************************************************************************* PP

       UTP25 198 dqadvlemQnwehvetvlkhlnkipkeshdadfsrvrmwylddqakllRQtlvfssyetpeinslfnskleNlaGkvkvkkvvkg..gslekvglkvrq 294
                 dq+++le+Qn  h+ t+++hlnkip+e+hdadfsr+rmwy++dqakl+RQt+vf++y +p +n+++n++++N++G++k++k+v+   +s+ k+glk++q
  CCD23387.1 458 DQLHSLEYQNLAHIFTIFDHLNKIPTEQHDADFSRIRMWYINDQAKLFRQTMVFTKYVSPAANAIINNRCRNWEGRWKNHKIVAPevSSIGKLGLKIKQ 556
                 **********************************************************************************998889*********** PP

       UTP25 295 vFqrfd..aesivdepdarfkfftekilpqlkkssskssgiliyipsyfdfvrvrnylke.ekvsfaaiseysskkevsraRelFfkgkkkvlLyteRl 390
                 +Fqrfd  + sivdepd+rfk+ft+ i+p+++ks+s+++giliyip+y+d+vr+rnylke +++ f++i+eys+++e++++R+l ++g+ kvlLyteRl
  CCD23387.1 557 IFQRFDimGGSIVDEPDYRFKHFTSVIIPSIVKSTSYDDGILIYIPDYTDYVRIRNYLKEkTRILFGDINEYSEQRELNSNRSLLQQGRVKVLLYTERL 655
                 ******9999*************************************************9999************************************ PP

       UTP25 391 hffrRykikgvkkvilYklPenpefyselvrfleksvkeeeadsaevsvrvlyskydalaLerivGseraakllkskkevyef 473
                 h++rRy+ikgvk+v++Yk+P+npefy+e+vrf++k+++ +++d + ++vr++y k+d l+LerivG++ra  l+++++evyef
  CCD23387.1 656 HHYRRYEIKGVKSVVFYKPPTNPEFYNEVVRFIGKNAFLGNTDLNISTVRTVYCKLDGLSLERIVGTKRAGILCHAQNEVYEF 738
                 **********************************************************************************9 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.7     1e+04     114     136 ..     198     219 ..     186     232 .. 0.65
   2 !    9.0   0.0   0.00018       1.1      31      69 ..     300     359 ..     266     374 .. 0.81
   3 !   10.2   0.1     8e-05      0.48      89     157 ..     414     486 ..     386     512 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.7
                 CTSSHCTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 114 tgklnlsqvrflVlDEadrlldq 136
                 +++++++  + +V+D  + + ++
  CCD23387.1 198 SREIKYKATK-IVIDDSHSVISS 219
                 4455555443.678888887765 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHS.....................TTSTS-EEEEEESSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  31 flipvlqivyet.....................kgktgpkalivePtreLaeqtlnnlkk 69 
                 +++ +l++vy+t                     +g t+pk+liv+Ptr  a ++ +++ k
  CCD23387.1 300 YALHALNHVYKTrdrilknnqrlqdntdteyldQGFTRPKVLIVVPTRDTAYEVTDKIIK 359
                 67778888888888888777777777777888788899***********99999988765 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 8e-05
                 HHHHHHHTTCSEEEEEHHHHHHHH....HCTSSH.....CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST CS
                 xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  89 dqlskldngvdivvgtpgrlddll....stgkln.....lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk 157
                 + +s++  + di+v  p  ++ ++    + +  +     ls++++l++D  + l  q    +i +i+ +l++i ++++
  CCD23387.1 414 KLYSNF-YQSDIIVCSPLGMQMIVentdK-K--KrqddfLSSIELLIVDQLHSLEYQ-NLAHIFTIFDHLNKIPTEQH 486
                 334444.569*******999888875532.2..234688*****************9.77777788888876655544 PP

>> DUF2538  Protein of unknown function (DUF2538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   9.7e-06     0.058       6      67 ..     465     527 ..     461     530 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.7e-06
     DUF2538   6 yekirhidkvfdrleqqiieskdrahlrkelfyvndehrenyeall.iyykeseenplvdgac 67 
                 y++++hi  +fd l+++ +e++d +  r  ++y+nd+ +   ++++   y     n +++  c
  CCD23387.1 465 YQNLAHIFTIFDHLNKIPTEQHDADFSRIRMWYINDQAKLFRQTMVfTKYVSPAANAIINNRC 527
                 78899*******************************998776665415688889999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1553  (0.0866194); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.32s 00:00:01.14 Elapsed: 00:00:00.49
# Mc/sec: 4563.68
//
Query:       CCD23388.1  [L=261]
Description: hypothetical protein NDAI_0B03540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-94  314.0   6.2    6.3e-94  313.8   6.2    1.0  1  MRP-S25   Mitochondrial ribosomal protein S25
    2.6e-08   34.2   2.0    1.9e-06   28.1   0.1    2.8  3  MRP-S23   Mitochondrial ribosomal protein S23


Domain annotation for each model (and alignments):
>> MRP-S25  Mitochondrial ribosomal protein S25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.8   6.2     7e-98   6.3e-94       1     229 [.       1     229 [.       1     230 [. 0.96

  Alignments for each domain:
  == domain 1  score: 313.8 bits;  conditional E-value: 7e-98
     MRP-S25   1 mkiqtnavnvlertsallksgllkkkPawydvvakiPPstkltrkpklredpskkkrkktlkkksekk...klektreskkekkkkakklfkppklkyl 96 
                 mkiqtnavn +ertsa+l+sgll+++Pawydvva+iPP++k+tr+pk++ +p++ ++k+ +k+ + +     l+ktr +++++k++a++l+kppkl yl
  CCD23388.1   1 MKIQTNAVNLVERTSAYLSSGLLQNTPAWYDVVASIPPTKKFTREPKIT-NPTTGRNKTFFKDDRIRVnnkGLYKTRMNQMDRKDSANNLYKPPKLIYL 98 
                 9************************************************.9999998888887665545535*************************** PP

     MRP-S25  97 eDklRkqFykdHPwElarPkvlvEnsgkdlekkdwsrlrqlgkpldgEsvVqrtlyLlknkeklslseAYdkarfeFyrlrmeeeiesrvAkeEaemyG 195
                 eD+lR+ F+++HPwEl+rPk+l+Ens    e++dws+++q +k+ldgEsvVqrtlyLlkn++ +++ +AY+karfeFyrlr++++i+++vA+eEaem+G
  CCD23388.1  99 EDRLRSLFFEQHPWELSRPKILIENSL--EENFDWSHIQQWEKQLDGESVVQRTLYLLKNEPGINMLQAYNKARFEFYRLRIQQDISQQVAQEEAEMFG 195
                 **************************7..47******************************************************************** PP

     MRP-S25 196 avfgkseleiglekeqkvidkwkkkaeeetelle 229
                 ++f+++++e+g+ekeqkvi++wkkka +et+l+e
  CCD23388.1 196 SIFRQTSFEHGIEKEQKVIEQWKKKAIQETQLME 229
                 *******************************997 PP

>> MRP-S23  Mitochondrial ribosomal protein S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.1   2.1e-10   1.9e-06      11      88 ..      10      85 ..       5      91 .. 0.88
   2 !    4.6   0.0     0.004        36      59      77 ..      93     111 ..      85     158 .. 0.73
   3 ?   -1.1   0.1      0.24   2.2e+03      87     123 ..     184     221 ..     165     228 .. 0.54

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 2.1e-10
     MRP-S23 11 iftrvkdLlrsgvlkeeekPlWydvyeafPPkreplyerpapkledkvreilYeeDevrakfykqygkgseavdllke 88
                +++r++  l sg l+  + P Wydv+++ PP ++ + e +++++++  ++ ++++D +r +    y+++ +++d  ++
  CCD23388.1 10 LVERTSAYLSSGLLQ--NTPAWYDVVASIPPTKKFTREPKITNPTTGRNKTFFKDDRIRVNNKGLYKTRMNQMDRKDS 85
                678999********9..9***************9999999999989999**********9998888888888876655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.004
     MRP-S23  59 reilYeeDevrakfykqyg 77 
                 ++++Y eD +r  f++q+ 
  CCD23388.1  93 PKLIYLEDRLRSLFFEQHP 111
                 6899***********9764 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.24
     MRP-S23  87 kekkkstcqrfvekyqelkk.keeldeeelfeeaekal 123
                 ++  + +++ f + +++ +  ++  +e++++e+ +k+ 
  CCD23388.1 184 QQVAQEEAEMFGSIFRQTSFeHGIEKEQKVIEQWKKKA 221
                 44444445556666666555233334444666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1987.04
//
Query:       CCD23389.1  [L=372]
Description: hypothetical protein NDAI_0B03550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.9e-106  354.8   0.1     6e-106  354.5   0.1    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.5   0.1  3.4e-110    6e-106       1     348 []      25     368 ..      25     368 .. 0.95

  Alignments for each domain:
  == domain 1  score: 354.5 bits;  conditional E-value: 3.4e-110
                 EEEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHS.SEEEEEE---CSSSSSSHHH.HHHHHHHHTTEEEE CS
      Iso_dh   1 kiallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikea.dvvllgavgtpkekevrpen.gLlaLrkeldlfan 97 
                 +i l++gdgiG+ev++a ++vl+++++k+gl+++f + ++G +++  tg++lp+et++++k++ + +l+gav++p+ ++v+ ++ +++aLrke++l+an
  CCD23389.1  25 TIGLIPGDGIGKEVIPAGKQVLQNLNSKHGLNFDFIDLQAGFQTFLDTGKALPDETIQVLKNQcQGALFGAVQSPT-TKVEGYSsPIVALRKEMGLYAN 122
                 5899*********************************************************9989***********.788888779************* PP

                 EEEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSC.GGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHT....TTSEEEEEESTTTTH CS
      Iso_dh  98 lrpvkvfeklkvksplkrevveevdlvivReltgg.iYfgeekekkgsifteevavdtklyseeeieriaraafelAlkr....gkkkvtlvdKanvlk 191
                 +rpvk++e     ++ k+     vd+vivRe+t   i ++ e+++ +  ++++va  tk++se +++ria++a+++Al+r    gk+++t+++K+nvl+
  CCD23389.1 123 VRPVKSVE----GTTDKP-----VDMVIVRENTRRfINIKLERTYIDRATGTRVAEATKRISEIATRRIATIALDIALQRlktnGKATLTVTHKSNVLS 212
                 *******4....555565.....9*********87356778888888889*****************************999999************** PP

                 HHH.HHHHHHHHHHCC...TTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEESS---CCCTTSS CS
      Iso_dh 192 sse.lwrkiveevaee...eypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEavHGsapdiagkd 286
                 +s+ l+r+i+++v+e+   +y++i++++q+vDs++++++++p++fdV+v++Nl+GDilSD aaalvGslG++pSa++g+ +++i E++HGsapdiagk+
  CCD23389.1 213 QSDgLFREICKDVYESnkdKYGQINYNEQIVDSMVYRMFREPQCFDVVVAPNLYGDILSDGAAALVGSLGVVPSANVGP-EIVIGEPCHGSAPDIAGKG 310
                 *************998888***********************************************************6.7****************** PP

                 -S-THHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHH.TSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 287 kaNpiavilSaalmLryslgleeaAdkiekAvekvlea.givTkDlageaakevstsefgdav 348
                 + Npia+i S+almL++ lg++eaA++i++Ave++l++ +++T Dl+g++    +t+e++++v
  CCD23389.1 311 ISNPIATIRSTALMLEF-LGHNEAAQDIHRAVEANLKEnKVKTPDLGGKS----TTQEVTEDV 368
                 *****************.*******************9899*********....999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2913.96
//
Query:       CCD23390.1  [L=756]
Description: hypothetical protein NDAI_0B03560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-36  124.8   0.0    6.9e-36  124.0   0.0    1.4  1  Pkinase      Protein kinase domain
    9.4e-26   90.6   0.0    1.4e-25   90.0   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0013   18.1   0.0     0.0026   17.1   0.0    1.5  1  Kinase-like  Kinase-like
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.35   10.7   0.0    1.7  2  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   0.0   1.5e-39   6.9e-36      23     260 ..      49     294 ..      24     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 124.0 bits;  conditional E-value: 1.5e-39
                 TTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE.......SSEEEEEEE--TTEBHHHHHH..HHSS--HHHHHHHHHHHHHHH CS
     Pkinase  23 tgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee.......kdelylvleyveggeladlle..rkgslseeeakkiakqilegl 111
                 +++  ++K++ +  ++    +++++E+  +k lk  +++v ++++          + e++l++ey+egg l d+++   +  lse+e+ +i++q+++g+
  CCD23390.1  49 KSNVACLKRVIVPTKSGL--NTLRAEVDAMKLLKnNRHVVSYIDSNAVksafnngSYEVLLLMEYCEGGGLIDFMNsrLQNRLSEAEILNILSQTAQGV 145
                 344455677777766654..46************99*******99877778888888999***************9654456***************** PP

                 HHHHHTT..EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..........BCTTTSCGGGS-HHHH...TTSCBSHHHHHHHHHHHHHHHHHSS- CS
     Pkinase 112 eylHskg..iiHrDlKpeNiLidekgelKitDFGlakelesssk..........ltsfvgtseYlAPEvl...keneyskkvDvWslGvilyelltgkp 195
                 + +H+ +  ++HrD+K eN+L + +ge+K++DFG ++ + +  +                t +Y+ PE+l   ++ ++++k+D+W+lGv ly+l + ++
  CCD23390.1 146 ANMHALQpvLLHRDIKIENVLRSGNGEFKLCDFGSVCGYIRPPRnqqelsyvqhDILKNTTAQYRCPEMLdlyRGLPIDEKSDIWALGVFLYKLCYYTT 244
                 ****7777699*************************99998888889999864422245799*********9999************************ PP

                 STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 196 pfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellq 260
                 pf+++ ++    ++l+            k+++p     s+ +k+l++ +l+++p+kR+ + ell+
  CCD23390.1 245 PFEKTGEN----AILHS-----------KFQYPAFPIYSDRLKNLIRVMLSENPTKRPNICELLE 294
                 ***33333....35555...........8999****************************99987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   3.2e-29   1.4e-25       4     258 ..      25     295 ..      23     296 .. 0.83

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 3.2e-29
                  EEEEEEESSEEEEEEEEETTTTSSEEEEE.EEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE.......SSSS..EEEEEE--TTEBHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVa.vKtlkeeateeekeelleeakimkkl.khpnivkllgvct.......keep..llivteyvkgGdLlk 90 
                  +k l +G f++++  +++  ++ ++ +Va +K +    t++  + l  e++ mk l +++++v+++              +  +l+++ey++gG L +
   CCD23390.1  25 KKYLTSGGFAQIYAVEITPVDTYSKSNVAcLKRV-IVPTKSGLNTLRAEVDAMKLLkNNRHVVSYIDSNAvksafnnG--SyeVLLLMEYCEGGGLID 119
                  67899*************9777777777625666.455566699************999*****99765543555333..2559************** PP

                  HHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEEETTEEEE-STTTH.......EETTTSSEEEETTSSTSGGGGS-HHHHHH CS
  Pkinase_Tyr  91 fLrkkekekltlkdllsfalqvAkGmeyLeskk..lvHrdlaarNvLlsenkvvkisDfGLa.......rdiekddeyvkkeeaklpvkWmapEslke 179
                  f++++ +++l+  ++l++  q A+G++ +++ +  l+Hrd+   NvL s n   k++DfG         r+ ++ ++ +++  +++  ++  pE+l+ 
   CCD23390.1 120 FMNSRLQNRLSEAEILNILSQTAQGVANMHALQpvLLHRDIKIENVLRSGNGEFKLCDFGSVcgyirppRNQQELSYVQHDILKNTTAQYRCPEMLDL 217
                  ******************************9886688**********************95422222223333334446666778999********99 PP

                  SE...EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  Pkinase_Tyr 180 kk...ftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselvek 258
                   +   + +ksD+W+ Gv+l+ ++    +p+++  ++ +   l+++ + ++    +++l++l++  ++e+p++Rp++ el+e+
   CCD23390.1 218 YRglpIDEKSDIWALGVFLYKLCY-YTTPFEKTGENAI---LHSKFQYPAFPIYSDRLKNLIRVMLSENPTKRPNICELLEE 295
                  98899*****************99.5789998877664...56788888889999*********************999886 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   5.9e-07    0.0026     151     288 .]     139     286 ..     104     286 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.9e-07
  Kinase-like 151 lqlirlaanLqakg..lvhgkftvdnllldekgglmlggftaLvragtkvvlseve.............kgfaPpEllgsrggytrknktkmthklda 233
                   q  + +an++a++  l+h +++ +n+l   +g ++l +f++   +    + ++ e             + +  pE+l         + + +  k d 
   CCD23390.1 139 SQTAQGVANMHALQpvLLHRDIKIENVLRSGNGEFKLCDFGSVCGYIRPPR-NQQElsyvqhdilknttAQYRCPEMLDL------YRGLPIDEKSDI 229
                  344455677777765589************************998876666.6666222224444444444555555544......2446777889** PP

  Kinase-like 234 WqlGlviyriwclklPltlateeakeewkfklck..kipekvkaLlkkfLqlsqedR 288
                  W+lG+  y +   + P+++  e+a+   kf+  +    ++ +k L++ +L  +  +R
   CCD23390.1 230 WALGVFLYKLCYYTTPFEKTGENAILHSKFQYPAfpIYSDRLKNLIRVMLSENPTKR 286
                  *******************9999876555555444278************9887776 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.034   1.5e+02      35     109 ..      67     152 ..      59     153 .. 0.76
   2 ?   10.7   0.0   7.9e-05      0.35     153     187 ..     135     173 ..     115     182 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.034
                 HHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE.......EEEEEE----EE-SS........HHHHHHHHHHHHHHHHHHCCHHCH. CS
         APH  35 eeirrevallrlLakagvpvPevlagdtddeeigl.......lfalieyvpgrsllr........klsaaqlpellealgeflaalhqvd 109
                 +++r+ev+ ++lL ++  +v   ++   +++++         + +l+ey++g  l +        +ls+a++ ++l + ++  a++h+++
  CCD23390.1  67 NTLRAEVDAMKLLKNN-RHVVSYID---SNAVKSAfnngsyeVLLLMEYCEGGGLIDfmnsrlqnRLSEAEILNILSQTAQGVANMHALQ 152
                 5678888888888877.44656665...3333322355556699*********9999999999999999999999999999999999984 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 7.9e-05
                 HHHHHHH--S.....SS-EEEE-SS-SGGGEEEC..TTEE CS
         APH 153 laalaallpg.....elptvllHgDlhpgNllvdpddgrv 187
                 l+ l ++++g     +l++vllH+D++  N+l   ++g++
  CCD23390.1 135 LNILSQTAQGvanmhALQPVLLHRDIKIENVLRS-GNGEF 173
                 33444444445557789***************99.66654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5584.60
//
Query:       CCD23391.1  [L=333]
Description: hypothetical protein NDAI_0B03570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-53  180.0   0.0    6.5e-53  179.4   0.0    1.3  1  DUF2431   Domain of unknown function (DUF2431)


Domain annotation for each model (and alignments):
>> DUF2431  Domain of unknown function (DUF2431)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.4   0.0   3.6e-57   6.5e-53       1     168 []      73     285 ..      73     285 .. 0.95

  Alignments for each domain:
  == domain 1  score: 179.4 bits;  conditional E-value: 3.6e-57
     DUF2431   1 LlvGegdfSFarslveqh..kcenlvaTsyd.seeellekypqa.eenieeLeeegvkvlfgVDatkleks..........klqeklkkek.fdriifn 84 
                 Ll+GegdfSFa+s++eq+   + nl+aTs+d s  el  kyp+  een++ L +egvk+lf+VD+tkl ks          k    ++k+k  ++i+fn
  CCD23391.1  73 LLIGEGDFSFAKSIIEQDyiLPGNLIATSFDaSPTELRLKYPNTfEENYKFLINEGVKILFKVDGTKLIKSlklskktpwsKIVGPAWKSKyLNNIMFN 171
                 8**************988898889*****************8865*************************99**9998876335667788879****** PP

     DUF2431  85 FPhvggkstdvnrqvranqeLlvsffksakellsekp..............................geilvtlfegepytlwnikdlareaglkvvrs 153
                 FPh+g++++d++r+++++qeL+ ++f s+k+l+s  +                              g+i++++f+gepy++w+ik la+++ l+v+rs
  CCD23391.1 172 FPHTGKGIKDQDRNIKDHQELVFGYFDSSKQLFSLINkplksatsgytlgysteknqdsegissegyGKIILSVFDGEPYDSWQIKMLAKKNALHVERS 270
                 ********************************9998889************************************************************ PP

     DUF2431 154 fkFdaeaypgYkhar 168
                  kF++e++pgY+h+r
  CCD23391.1 271 NKFQWENFPGYHHRR 285
                 *************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1668  (0.0930336); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 2662.90
//
Query:       CCD23392.1  [L=507]
Description: hypothetical protein NDAI_0B03580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-28   99.2   9.3      2e-28   99.2   9.3    3.0  3  CLTH        CTLH/CRA C-terminal to LisH motif domain
  ------ inclusion threshold ------
      0.067   13.7   0.4       0.22   12.0   0.4    1.8  1  Zn-C2H2_12  Autophagy receptor zinc finger-C2H2 domain


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.29   2.6e+03       5      32 ..      59      87 ..      56     101 .. 0.75
   2 !   99.2   9.3   2.2e-32     2e-28       4     146 ..     196     395 ..     193     397 .. 0.97
   3 ?   -2.9   0.0      0.63   5.6e+03     100     120 ..     457     477 ..     449     486 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.29
        CLTH  5 rqkIik.lilegdlseaiewinenkpell 32
                r++I + +i  g++s +i++i +++++l 
  CCD23392.1 59 RNSIDDdKIALGEISDLIKRIDKFEKQLS 87
                56665415799999999999999999886 PP

  == domain 2  score: 99.2 bits;  conditional E-value: 2.2e-32
        CLTH   4 erqkIikli.legdlseaiewinenkpellesnsnLeFkLkllqfielirgktkdieealeyarenlefendehlkelekamsLLafsdpes....... 94 
                  ++kI +++ +++dl+++++winenk +l+++ns LeF+ + +++iel++ + + +++ + + +++l ++ ++++++l+ a++L++f + ++       
  CCD23392.1 196 TANKISNALtQSHDLTPLLKWINENKIYLKKRNSILEFETRFQEYIELLK-Q-GWYQRSISCYQTYLLPFMKNNFNDLKLAAGLILFIQYSNngredta 292
                 689***********************************************.9.**************877777*****************99******* PP

        CLTH  95 ...................................................kelssplknlldpsrrekvakefnsailkllglskespLeillsagls 142
                                                                      + +++++ll+ sr++ + k+f  +++ ++g+sk++pL i+ls+g+s
  CCD23392.1 293 tlyeiddnskmnkpsqnlihsiyenifnkrilttnvntdliknnsmhfcygTCDTDRYQKLLSVSRWDTLKKIFLDEYYTMYGISKNDPLLIYLSLGIS 391
                 ***************************************************88899******************************************* PP

        CLTH 143 alkt 146
                 +lkt
  CCD23392.1 392 TLKT 395
                 **98 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.63
        CLTH 100 plknlldpsrrekvakefnsa 120
                 p +n++d +r +++ak++ ++
  CCD23392.1 457 PNGNVYDAQRLKDLAKTLKKK 477
                 568899999999999999876 PP

>> Zn-C2H2_12  Autophagy receptor zinc finger-C2H2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   2.4e-05      0.22       3      17 ..     425     438 ..     424     440 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.4e-05
  Zn-C2H2_12   3 CPlCseqFpknvdqd 17 
                 CP+Cse+F k ++++
  CCD23392.1 425 CPVCSESFAK-ISKN 438
                 ********99.8887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1006  (0.0561102); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3630.60
//
Query:       CCD23393.1  [L=359]
Description: hypothetical protein NDAI_0B03590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-75  254.8   0.4    1.5e-75  254.5   0.4    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.5   0.4   8.5e-80   1.5e-75       1     348 []      29     352 ..      29     354 .. 0.94

  Alignments for each domain:
  == domain 1  score: 254.5 bits;  conditional E-value: 8.5e-80
                 EEEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CS.SSSSSHHHHHHHHHHHTTEEEEE CS
      Iso_dh   1 kiallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpk.ekevrpengLlaLrkeldlfanl 98 
                 +++ll+gdg+G+e+++++++++k+ +   +  +++e vd++g    e      +++++++k++++ l+g   tp  + ++ + n  +a rk+ld++an+
  CCD23393.1  29 TVTLLPGDGVGKEITDSVVSIFKSEN--VP--IDWETVDISGLDHTE----GVKAAVDSLKRNKIGLKGIWHTPAdQVGHGSLN--VAFRKQLDIYANV 117
                 589********************988..55..9*******9976655....34789******************988999****..************* PP

                 EEEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH.HH CS
      Iso_dh  99 rpvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse.lw 196
                    k++  ++vk+++      +vdlv++Re+t+g Y+g e+e         v+ ++k ++++ +eriar+af+ A+++++k+vt+v+Kan++k s+ l+
  CCD23393.1 118 AIFKSI--EGVKTKIP-----NVDLVVIRENTEGEYSGLEHESVPG-----VVESLKIITKSKSERIARFAFDFAKRNNRKSVTAVHKANIMKLSDgLF 204
                 999999..56666555.....59*********************97.....899********************************************* PP

                 HHHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGSEEEE-HHHHHHHHHHHHHHTTSGCC-EEEEEETSS-EEEEESS---.CCCTTSS-S-THHHH CS
      Iso_dh 197 rkiveevaeeeypdielehqlvDsaamqlvkspkqfdVivtkNlfGDilSDeaaalvGslGllpSaslgekkvaifEavHGsa.pdiagkdkaNpiavi 294
                 r++v ++ eeeyp+i+ +  +vD+a mq+v +p+qfdV+vt+ ++G i+    aal+G+ Gl+p+++ g +  a+fE+    +  di g+++aNp+a++
  CCD23393.1 205 RNTVSKIGEEEYPEIQTSSIIVDNASMQAVAKPHQFDVMVTPSMYGTIVGNIGAALIGGPGLVPGVNYG-RDYAVFEPGSRHVgLDIKGQNVANPTAML 302
                 *********************************************************************.67******6554426************** PP

                 HHHHHHHHHTTT-HHHHHHHHHHHHHHHHH.TSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 295 lSaalmLryslgleeaAdkiekAvekvlea.givTkDlageaakevstsefgdav 348
                 lSa+l+L + lgle+ A++i++Av +v+++ + +T+D++g+a    st+ef++av
  CCD23393.1 303 LSATLLLDH-LGLEKSANRIKSAVYDVIAEgKATTQDIGGSA----STTEFTQAV 352
                 *********.********************77889*******....999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2832.26
//
Query:       CCD23394.1  [L=183]
Description: hypothetical protein NDAI_0B03600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-12   47.2  11.2    3.7e-11   43.6  11.2    2.2  1  Complex1_LYR_2  Complex1_LYR-like


Domain annotation for each model (and alignments):
>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6  11.2   2.1e-15   3.7e-11       5      82 .]      19     180 ..      15     180 .. 0.64

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 2.1e-15
  Complex1_LYR_2   5 Yrrllrel....re............................................................................l.ppe 18 
                     Y++l++el    r+                                                                            + ++ 
      CCD23394.1  19 YKSLIKELvrneRSarikqtlednkrhvslllykksqilrnlefqskqnsfvdrkndltvkayhdlnkienrikslksenprtdksllflNdSEP 113
                     66666666544411333333333333333333333333333444555555666666666666666666666666666665555555555422455 PP

  Complex1_LYR_2  19 lrslgdayvraefrr.hk..hlknpeeialflknqreYaellerynpglkmteeekvrktanrvglq 82 
                      +s +++ +  e +r ++  +l++ ++ ++flknqreY++l+e y + +++t++ek+++tanrvgl+
      CCD23394.1 114 IKSIFKNVLSMEHKRgNNtrDLQHFKDTIDFLKNQREYQQLVELYFADSNLTQAEKIKRTANRVGLD 180
                     55777777777777755488999999***************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1214  (0.0677115); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.20s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1531.02
//
Query:       CCD23395.1  [L=631]
Description: hypothetical protein NDAI_0B03610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       683  (0.0380947); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 5117.96
//
Query:       CCD23396.1  [L=432]
Description: hypothetical protein NDAI_0B03620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-115  384.7   0.0   4.5e-115  384.3   0.0    1.1  1  Diphthamide_syn  Putative diphthamide synthesis protein


Domain annotation for each model (and alignments):
>> Diphthamide_syn  Putative diphthamide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.3   0.0  2.5e-119  4.5e-115       1     296 [.     102     401 ..     102     408 .. 0.95

  Alignments for each domain:
  == domain 1  score: 384.3 bits;  conditional E-value: 2.5e-119
  Diphthamide_syn   1 fPegllpdsaeiadileef..gaevvilgDttYGaCcvdevaaehlgadllvHyGhsclspvd..rlpvlYvfveieldvehlvetlkknfkek 90 
                      +Pegll++s  i+dile+f  g+e+v++gD++YGaCc+d+++a++l++d++vHy+hscl+p+d  +++vlYvfv i++d +h+++tl+knf+++
       CCD23396.1 102 MPEGLLIFSLIISDILEQFcdGVETVVMGDVSYGACCIDDFTARALDCDFIVHYAHSCLVPIDitTIKVLYVFVTINIDETHVIKTLQKNFPKG 195
                      8*****************9999***************************************9999***************************** PP

  Diphthamide_syn  91 kkivlvstiqyahaleevkeeleeegyevv.kvpqsekplspgevlgctspklkeeeeevdailyigdgrfhllslmlsnpklpvyrydpyskk 183
                      ++++ ++tiq++ +++++k++l ++    + ++p + kpls+gevlgcts++l+  ++++da+++igdgrfhl+s+m++np++p+yrydpy++k
       CCD23396.1 196 SRLATFGTIQFNPCVHSIKDKLLNDDNHMLyIIPPQIKPLSRGEVLGCTSERLN--KDQIDAMVFIGDGRFHLESAMIHNPEIPAYRYDPYNRK 287
                      ********************99977333335455455****************8..67************************************ PP

  Diphthamide_syn 184 lteesydakkllrrRyaaiekakdakkvGiivgtlgvqgrlelverlkkllkeagkksylvlvgelnpakLanfaeidafVlvaCprlsiddgk 277
                      +t e yd+k+l++ R +aie+a++ k++G+i+g lg+qg+  +ver+++ lk+agk+++ ++++e++p+kLa+f+eidafV+vaCprlsid+g+
       CCD23396.1 288 FTLEGYDQKQLVSVRSDAIETARRGKTFGLILGALGRQGNRGTVERMERNLKAAGKTVIKIILSEIFPQKLAMFDEIDAFVQVACPRLSIDWGY 381
                      ********************************************************************************************** PP

  Diphthamide_syn 278 eFekPvltpyElevalg.er 296
                      +F+kP+ltpyE+ v+l+ + 
       CCD23396.1 382 AFNKPLLTPYEASVLLEkDV 401
                      ****************9443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3133.21
//
Query:       CCD23397.1  [L=510]
Description: hypothetical protein NDAI_0B03630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-68  227.5   0.8    1.2e-67  226.8   0.8    1.3  1  SHQ1      SHQ1 protein


Domain annotation for each model (and alignments):
>> SHQ1  SHQ1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.8   0.8   6.9e-72   1.2e-67       3     170 ..     266     446 ..     264     453 .. 0.97

  Alignments for each domain:
  == domain 1  score: 226.8 bits;  conditional E-value: 6.9e-72
        SHQ1   3 epvefteeekeklk.kLpkkeyllskeekkellltlvdiLfayaYdqretegeknvESawtigkLspqlsflde...........fsslkevviasvrR 89 
                 +pveft+ee+e+++ ++p++eyl++ +e+k++++tl+++Lf+y+++q e+eg++n+ESawt+gkL pq+sfld+            +++k +v++++rR
  CCD23397.1 266 MPVEFTTEEQEQMQnNIPQREYLIDGSETKRAYITLLNVLFGYVFEQLENEGQHNTESAWTMGKLIPQISFLDQqlileedaskdATQIKGAVVTGIRR 364
                 89************99******************************************************************9877************* PP

        SHQ1  90 sltYPlyRnfeLaekvlkdvykiLrggkrlvlkcLldikelfrehdvyyvlnklyldDycvwiqsak.eevlrslaeelkkv 170
                 +++YPl+R++eL+ kv+k+vy++Lr gkr+v+++Lldi+e+fr+hdvyyv++k++l D+++w++s++ e vlrsla e+++ 
  CCD23397.1 365 AMCYPLHRHYELSLKVWKQVYYLLRAGKRTVIRALLDINEVFRFHDVYYVYSKILLADLTSWFISQStEPVLRSLAIEMHRQ 446
                 ****************************************************************9998**********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3725.29
//
Query:       CCD23398.1  [L=677]
Description: hypothetical protein NDAI_0B03640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-10   39.6   0.4    1.3e-09   38.5   0.4    1.6  1  PH             PH domain
  ------ inclusion threshold ------
      0.055   13.4   0.0       0.26   11.2   0.0    2.1  1  RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRC


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.4   1.4e-13   1.3e-09       2     102 ..     534     635 ..     533     638 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.4e-13
                 EEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSS....TEEEEEEESSHHHHHHH CS
          PH   2 vkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverng....srtyllqasseeerkeW 96 
                 +++G+L ++++  k s+ + ++vL+ s l  +k  +++kd  p +s+ l++c+v+e+  +++ +++ +f l  + +ng     ++++++++s + + +W
  CCD23398.1 534 IRSGFLERRSKFLK-SYSRGYYVLTPSFLHEFKTADRKKDLVPVMSLALNECSVTEHS-NKKVQQEAKFILHAK-QNGlihkGHNWVFKTDSYDTMMQW 629
                 689********999.*****************************************86.557777777777333.44466655**************** PP

                 HHHHHH CS
          PH  97 ikaiqs 102
                  ++i+ 
  CCD23398.1 630 FEDIRL 635
                 ***986 PP

>> RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.9e-05      0.26      63      85 ..     541     563 ..     534     578 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.9e-05
                    -SHHHHHHCCCTTEEE-CHHHHH CS
  RTT107_BRCT_5  63 RTeKFLksLskapkilspdfied 85 
                    R +KFLks s++ ++l+p+f+ +
     CCD23398.1 541 RRSKFLKSYSRGYYVLTPSFLHE 563
                    678*****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3037  (0.16939); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 4366.85
//
Query:       CCD23399.1  [L=306]
Description: hypothetical protein NDAI_0B03650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-68  227.8   0.0      1e-67  227.4   0.0    1.2  1  Mob1_phocein  Mob1/phocein family


Domain annotation for each model (and alignments):
>> Mob1_phocein  Mob1/phocein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.4   0.0   5.6e-72     1e-67       3     169 .]     126     296 ..     124     296 .. 0.96

  Alignments for each domain:
  == domain 1  score: 227.4 bits;  conditional E-value: 5.6e-72
                   xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
  Mob1_phocein   3 tlgsg.dlkeavklPkgedlneWlavhvvdffneinllygtisefcteqscptmsagpkyeYlwadeevkkpvklsApeYidllmdwiesqlnd..l 96 
                   tlgs+  l++avklP+ged+neWlavh+vdf+n+in+lygti+efc++qscp+m a+++yeYlw + +   pv++sAp+Y+++lm w+++q++d  +
    CCD23399.1 126 TLGSEgVLNQAVKLPRGEDENEWLAVHCVDFYNQINMLYGTITEFCSPQSCPRMIATNEYEYLWSKGKGIPPVSVSAPKYVEYLMRWCQDQFDDeaI 222
                   7788779***********************************************************977889************************* PP

                   xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein  97 fpskagspfpknf.lkvvkkilkrlfrvyaHiYihHfeeiaeleleahlntcfkhfvlfvkeFkLidkkelepl 169
                   fp k++  fp+ f  k++  il+rlfrvyaHiY+hHf+ei el+l+++lnt+f+hf+lf++eFkL+   ++ pl
    CCD23399.1 223 FPAKKDGVFPERFiDKIIIPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFCLFAEEFKLLRPADFGPL 296
                   ************94567899***********************************************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2220.71
//
Query:       CCD23400.1  [L=796]
Description: hypothetical protein NDAI_0B03660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.7e-84  280.6   0.2    1.3e-83  279.7   0.2    1.5  1  6PF2K       6-phosphofructo-2-kinase
    2.2e-31  109.1   0.0    6.2e-26   91.3   0.0    3.2  3  His_Phos_1  Histidine phosphatase superfamily (branch 1)
    1.6e-05   25.1   0.2    5.6e-05   23.3   0.0    2.0  2  AAA_33      AAA domain
     0.0028   17.1   0.0     0.0081   15.6   0.0    1.8  1  KTI12       Chromatin associated protein KTI12
     0.0031   18.1   0.3      0.013   16.1   0.0    2.3  2  AAA_18      AAA domain
      0.004   17.6   0.0      0.017   15.6   0.0    2.1  2  AAA_17      AAA domain
     0.0068   16.3   0.0      0.015   15.2   0.0    1.5  1  APS_kinase  Adenylylsulphate kinase
      0.009   16.6   0.1      0.033   14.8   0.1    2.0  1  SlyX        SlyX


Domain annotation for each model (and alignments):
>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.7   0.2   5.8e-87   1.3e-83       6     222 ..     196     415 ..     191     416 .. 0.97

  Alignments for each domain:
  == domain 1  score: 279.7 bits;  conditional E-value: 5.8e-87
                 HHHT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS....---GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--SEE CS
       6PF2K   6 vtnlknsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreaska....lsdaeffrpdneealklreklalaalkdllaylneeegqva 100
                 ++++  sklviv+vGLpa+gK++i++kl+ryl+++ +++kvFnvg++rr+++++    ++d++ff+p+n+e++klrek+a+++l++ll+yl+e+ g v+
  CCD23400.1 196 SSTDYGSKLVIVMVGLPATGKSFITNKLSRYLNYSMYYCKVFNVGNTRRQFTEQkglsEQDSKFFDPKNPESTKLREKWAMDTLDELLNYLSEGPGCVG 294
                 5666789*********************************************9999999**************************************** PP

                 EEES---SHHHHHHHHHHHHHTT..-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTTT CS
       6PF2K 101 ifDAtNttrerRklilefveenn..lkvlflesicsdeeiikeNikevklsspDYkdketeeaikdflkRlenyekqyeplddeedeelsyIkvidvgk 197
                 ifDAtNtt+erRk +le ++++n  lkvlflesics+++++++N+k+++++ pDYk+k++++++kdf  Rl+ny ++yep++  + e ++yIk+idvgk
  CCD23400.1 295 IFDATNTTKERRKHLLEKIRKRNkyLKVLFLESICSNKDLVEKNVKLKLFG-PDYKGKNPDQSLKDFRDRLKNYMQAYEPIE--DSEGIQYIKMIDVGK 390
                 *********************9999**************************.******************************..7789*********** PP

                 EEEEE---SHHHHHHHHHHTT---S CS
       6PF2K 198 slvvnnvqgylqsrivyyllNihlk 222
                 +++++n++g+l+s++vyyllN++l+
  CCD23400.1 391 KVIAYNIEGFLASQTVYYLLNFNLT 415
                 *********************9986 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.28   6.2e+02      90     157 ..      99     168 ..      93     190 .. 0.80
   2 !   13.2   0.0   2.5e-05     0.055       1      46 [.     419     462 ..     419     465 .. 0.92
   3 !   91.3   0.0   2.8e-29   6.2e-26      47     192 ..     494     638 ..     479     640 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.28
                 .HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSE..EEEEE-HHHHHHHHHH CS
  His_Phos_1  90 taeiaeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarheget..vlvVsHggvirallar 157
                 ++e + e ++ l+++++++++++  g E+++    R  aa + ++++ ++ t  + +++  ++++a++++
  CCD23400.1  99 PKESQTELKNLLDKHNQHDNKNSKDGNETINNNSIRSFAAASTAVTSDSTSTstATLMTDSTIVNAMTSK 168
                 67788888999999999999999999*************9999999888877767777777777777665 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.5e-05
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTTS--- CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlagepid 46 
                 ++++R Ge+  na+gr++g  +++Lt +G + A+ la+++ +++i+
  CCD23400.1 419 IWITRNGESVDNARGRIGG--NSHLTSRGDKYAKCLAKFMDKQRIA 462
                 79*************9887..689****************999886 PP

  == domain 3  score: 91.3 bits;  conditional E-value: 2.8e-29
                 EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-B..S-BHHHHHHHHHHHHHHHHHHTTTSEEE CS
  His_Phos_1  47 aiysSplkRarqTaeliaealglpveldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrppg..gEsledvaaRvaaaleelaarhegetvl 143
                 ++++S l R ++Ta+ + e  + p+++ + L+E+  Gd+eg+t+ ei+ ++pee+e++++d+ ++r+pg  gEs+ dv +R+++++ el++ +++  vl
  CCD23400.1 494 FVWTSMLTRSIETAKYFNE-DDYPIKQMKMLDELGAGDFEGMTYPEIQGKFPEEFEERQKDKLRYRYPGmgGESYMDVINRLRPVITELERIEDN--VL 589
                 46***************98.58********************************************************************99975..** PP

                 EEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-EEEEEEE CS
  His_Phos_1 144 vVsHggvirallarllglpleelrrleldnaslsvlefdeggwrlvrln 192
                 +++H  v rall ++++l+++ + +l+++ ++++ le ++ g +  ++ 
  CCD23400.1 590 IITHRVVARALLGYYMNLDVDIIANLDIPLHCVYCLEPKPYGITWSLWE 638
                 ****************************************999998885 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       2.9   6.5e+03      55      82 ..     125     152 ..     100     167 .. 0.48
   2 !   23.3   0.0   2.5e-08   5.6e-05       1     102 [.     205     323 ..     205     365 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.9
      AAA_33  55 lyqilnelarkalsagrnvildatnlsr 82 
                    i n+ +r+ ++a  +v  d+t +s 
  CCD23400.1 125 NETINNNSIRSFAAASTAVTSDSTSTST 152
                 2223344555555555555555554443 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 2.5e-08
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfg....tdqqskt..........dytrvl.drlyqilnelarkalsagrnv..ilda 77 
                 ++++vGlp++GKs+   +l + l      + + +  + rr+ ++    +    ++          ++t+++ +++ ++l el+  +ls+g ++  i+da
  CCD23400.1 205 VIVMVGLPATGKSFITNKLSRYLNysmyyCKVFNVGNTRRQFTEqkglS----EQdskffdpknpESTKLReKWAMDTLDELL-NYLSEGPGCvgIFDA 298
                 89******************99998887666677777777777644441....224445666665556655166788887777.7999999973467** PP

      AAA_33  78 tnlsrrerarflklarrlgvpvriv 102
                 tn+++++r+ +l+  r+ +   +++
  CCD23400.1 299 TNTTKERRKHLLEKIRKRNKYLKVL 323
                 ********98887666555444555 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.6e-06    0.0081       4      98 ..     206     318 ..     204     372 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.6e-06
                 EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH..........TTSS..S-.-GGGHHHHHHHH.HHHHHH...HHTT...SEEEE-S---SHH CS
       KTI12   4 vvltGlPssGKstrakeLakaleeekrsvvviddeslg.........iekds..yk.dsakekalRssl.rsavkr...dLsk..ekvVIvDslnyikg 84 
                 +v+ GlP++GKs ++++L+++l+ + + + v +    +          e+ds  ++ ++ +  +lR++  +   ++    Ls+    v I D++n +k 
  CCD23400.1 206 IVMVGLPATGKSFITNKLSRYLNYSMYYCKVFNVGNTRrqfteqkglSEQDSkfFDpKNPESTKLREKWaMDTLDEllnYLSEgpGCVGIFDATNTTKE 304
                 899*********************888888777555554444444422222243332222333455443022223200023331123556666666666 PP

                 HHHHHHHHHHHTT- CS
       KTI12  85 fRYeLyciakaakt 98 
                  R  L    ++ ++
  CCD23400.1 305 RRKHLLEKIRKRNK 318
                 66666666666555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       5.1   1.1e+04      52      69 ..     101     118 ..      90     129 .. 0.58
   2 !   16.1   0.0   5.6e-06     0.013       1      69 [.     206     287 ..     206     336 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.1
      AAA_18  52 ldedkldklldaleenss 69 
                 + +  l++lld+++++++
  CCD23400.1 101 ESQTELKNLLDKHNQHDN 118
                 444455555666666555 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 5.6e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf..........gvnlrdvakenglllevdpe...aldeskrldedkldklldaleenss 69 
                 I+  G p++GK+ +++ Ls+ l++          g   r+   ++gl++ + ++   + +es +l+e+  +  ld+l +  s
  CCD23400.1 206 IVMVGLPATGKSFITNKLSRYLNYsmyyckvfnvGNTRRQFTEQKGLSEQDSKFfdpKNPESTKLREKWAMDTLDELLNYLS 287
                 7789******************999********5555555555555555555558888888888888877777777766544 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.5e-06     0.017       1     116 [.     209     335 ..     209     342 .. 0.69
   2 ?   -3.0   0.0         4   9.1e+03      70     102 ..     584     617 ..     567     629 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.5e-06
                 EE-TTSSHHHHHHHHHH.....HHTEEEEEHHHHHHHHHHTTTSHSSHHHHC..TSHHHHHHHHHHHHHHHHHHHH...HSSEEEEEE-SEEEETTEEE CS
      AAA_17   1 lGgPGsGKgtqceklve.....kygfthlsaGdllreeakrgglakardemr..klpleekkelqkeaaekiaeea...kkkgvlvdghprikeqagfl 89 
                 +G+P  GK+++ +kl +      y  ++++ G   r+  +++gl+++++++   k+p e +k   k a++++ e     +++   v  +  ++++++ +
  CCD23400.1 209 VGLPATGKSFITNKLSRylnysMYYCKVFNVGNTRRQFTEQKGLSEQDSKFFdpKNP-ESTKLREKWAMDTLDELLnylSEGPGCVGIFDATNTTKERR 306
                 7**************9844443568999****************8888887733333.44444455566666655456555555555555556666666 PP

                 ESSHHHHHHHH..SEEEEEE..--HHHHH CS
      AAA_17  90 dglpkevleelkpdaiille..adpeeil 116
                 ++l +++ +  k+ ++++le  +++++++
  CCD23400.1 307 KHLLEKIRKRNKYLKVLFLEsiCSNKDLV 335
                 77788887777887888877555555555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4
                 HSSEEEEEE-SEE.EETTEEEESSHHHHHHHH.. CS
      AAA_17  70 kkkgvlvdghpri.keqagfldglpkevleelkp 102
                  +++vl+ +h ++ ++  g++ +l+++++++l++
  CCD23400.1 584 IEDNVLIITHRVVaRALLGYYMNLDVDIIANLDI 617
                 6778888888766134467778888888777765 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.7e-06     0.015       3      56 ..     204     257 ..     202     260 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.7e-06
                 EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTTTTT--SSHHHH CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgLnkdLgfseedR 56 
                 +v+ + Gl ++GKs i+n+l+++L+ + + +++ +  n R++ +++ g se+d 
  CCD23400.1 204 LVIVMVGLPATGKSFITNKLSRYLNYSMYYCKVFNVGNTRRQFTEQKGLSEQDS 257
                 6899********************************************999985 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.5e-05     0.033      23      65 ..     745     787 ..     745     787 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXX CS
        SlyX  23 ndvvaeqqqqidrlqrqlrllaerlkeleessgaseaeeepPP 65 
                 n+ + +q+ +idrl ++l ll+ + ++ e++++++ ++   PP
  CCD23400.1 745 NKLLNRQNFEIDRLNEKLSLLKTKYESTEKNNENKSSPRGTPP 787
                 78899*************************9998777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1109  (0.0618551); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 5711.83
//
Query:       CCD23401.1  [L=690]
Description: hypothetical protein NDAI_0B03670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.5e-166  554.3   0.0   1.8e-166  554.0   0.0    1.1  1  Metallopep     Putative peptidase family
     0.0008   19.4   0.0     0.0019   18.2   0.0    1.6  1  Jacalin        Jacalin-like lectin domain
  ------ inclusion threshold ------
      0.029   14.9   0.0      0.063   13.8   0.0    1.5  1  Reprolysin_3   Metallo-peptidase family M12B Reprolysin-like
       0.37    9.7   1.6       0.41    9.5   0.3    1.6  2  Peptidase_M66  Peptidase M66


Domain annotation for each model (and alignments):
>> Metallopep  Putative peptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  554.0   0.0    4e-170  1.8e-166       3     427 .]       2     430 ..       1     430 [. 0.99

  Alignments for each domain:
  == domain 1  score: 554.0 bits;  conditional E-value: 4e-170
  Metallopep   3 evenlqdneevsqpvvlvkGkisekksekkkgkvkvehndksfppltwpvndseFKalvhLspgenrltvekesevasseltlnykpleqnppvhlvil 101
                 e++nl+ ne+v +p++ ++Gk+ +k+  + +++++v+h++  +pplt+p+n++ FKa+v L+pgen++t+  ++++ s+++t+ y+pl q++p+hl+++
  CCD23401.1   2 EFFNLNHNEQVVSPCLTIHGKLTKKT--SGAQSIQVQHPQ--LPPLTFPINEDFFKATVILTPGENKFTF-ITDKNVSQQITCYYTPLLQDQPIHLCLI 95 
                 789*********************99..8999********..****************************.**************************** PP

  Metallopep 102 vakdsdgtfdapeaklekeegndldaaikklrlaarLlQaftaeklrrkglgrrtFrleeevetdtlvq....esetlrsevkvhvlrsektvaelrdl 196
                 +akds+++fd+p++++ ke+gndl  aikklr+a+rLlQaft+e++ r+g+g+rt +++ee++ dt +q    ++ ++r+++k+h++rsek+++e+r++
  CCD23401.1  96 LAKDSPMKFDSPKDQIAKENGNDLYLAIKKLRMAGRLLQAFTNEQMLRNGFGHRTVQFVEEYTLDTEFQdnpmKKLKMRNNIKIHLVRSEKSIKEIRSH 194
                 *********************************************************************9999999*********************** PP

  Metallopep 197 dlAQQnskakdedeLfqiaaealkksgep..esdkkvkvavllldthydkkrklitgHaALGGggseikLaiFGshglyswPssleevvpafldatrvd 293
                 d+AQQnskakd ++L+ ia++alkk+g p  + +k+v++a++++dth+d+  klitgHaALGGg+++ikLaiFGshg+yswP+s+e+vvp+fl+ t+++
  CCD23401.1 195 DIAQQNSKAKDAGALYGIAMDALKKYGGPfiNCEKPVQAACIYMDTHWDG--KLITGHAALGGGDDHIKLAIFGSHGIYSWPRSMEDVVPYFLNDTKAS 291
                 **************************************************..*********************************************** PP

  Metallopep 294 taevanDsnergtywealaitlGAflHEiGHllglpHqedGvmlrdydalnrsfttreaeskrtkskg.krkvlpkeectwsrldalrfryhpsfalpg 391
                 t+evanD++++g+ywe+lait+GAf HE+GHllg pHqe+Gvmlrdy+ lnrsf+t+ea++ rtks+g +++++pkeectw+rld+lr++yhpsf+ p+
  CCD23401.1 292 TTEVANDCGQCGSYWECLAITMGAFWHEMGHLLGSPHQEHGVMLRDYTVLNRSFLTKEAYCLRTKSYGaAAPIFPKEECTWHRLDLLRYLYHPSFTKPE 390
                 ********************************************************************99***************************** PP

  Metallopep 392 d....tsskpsdenkkklskpsvypveneevliksesgia 427
                 d    ++ +ps+   ++ s+p+ yp++n+ + ++s++gi+
  CCD23401.1 391 DyndpSFFRPSKIGGFQFSEPNFYPLGNDICRFSSQTGIT 430
                 *****9********************************95 PP

>> Jacalin  Jacalin-like lectin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.2e-07    0.0019      56     130 ..     616     686 ..     602     689 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 4.2e-07
                 EETTT--EEEEEEEEEEESSSEEEEEEEEEEETTS-EEEEEC...--SEEEEEE-SSEEEEEEEEEESSSEEEEEEE CS
     Jacalin  56 idypdEyitsVegtydkvsvesevitsLtfkTnkgrtselfg..tksgtkfsleekgkkivGFhGragnllnalGvy 130
                 i  p Eyit   +           i + +  Tn gr  ++ g  + +g++  ++ +g+++ G +G+ gn++++lG+ 
  CCD23401.1 616 ILEPGEYITGFTVKSG------WWIDAVQVSTNYGRKTDMLGnkEGGGQRELFPPEGQYVLGIYGSVGNWVDSLGIV 686
                 4457888887666544......5899*************9997544567777778********************86 PP

>> Reprolysin_3  Metallo-peptidase family M12B Reprolysin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.4e-05     0.063      99     124 .]     295     329 ..     278     329 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
  Reprolysin_3  99 gssvlgkvga.........dtvaHEiGHnfganHt 124
                   + +  g++g           ++ HE+GH +g++H+
    CCD23401.1 295 VANDCGQCGSyweclaitmGAFWHEMGHLLGSPHQ 329
                   333334444466677777799*************5 PP

>> Peptidase_M66  Peptidase M66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.45     2e+03      17      46 ..     169     198 ..     153     201 .. 0.79
   2 ?    9.5   0.3   9.2e-05      0.41     192     212 ..     312     332 ..     299     345 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.45
  Peptidase_M66  17 pkdwmkpgvklqfsaslkksselsspkvga 46 
                    +k +m++++k++++ s k+  e+ s ++ +
     CCD23401.1 169 KKLKMRNNIKIHLVRSEKSIKEIRSHDIAQ 198
                    566899999999988888888887776665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 9.2e-05
  Peptidase_M66 192 ltgefiHEqGHalGLpHylag 212
                    + g f+HE+GH lG pH   g
     CCD23401.1 312 TMGAFWHEMGHLLGSPHQEHG 332
                    5789*************7766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 5015.66
//
Query:       CCD23402.1  [L=346]
Description: hypothetical protein NDAI_0B03680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.063   13.0   0.1        5.5    6.7   0.1    2.6  3  Methyltransf_16  Lysine methyltransferase
      0.079   12.9   0.0       0.16   11.9   0.0    1.5  1  DUF4898          Domain of unknown function (DUF4898)


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.42   3.7e+03     102     126 ..      36      60 ..      21      62 .. 0.81
   2 ?    3.4   0.0    0.0063        57      18      60 ..     131     169 ..     118     208 .. 0.64
   3 ?    6.7   0.1   0.00061       5.5     106     153 ..     267     317 ..     238     330 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.42
  Methyltransf_16 102 vevLdWgeeleedllekeevDlila 126
                      v++Ld    l++d+++++ +Dl l+
       CCD23402.1  36 VNPLDFPRLLTQDVVQPQIIDLSLM 60 
                      6788888899999999999999776 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0063
  Methyltransf_16  18 grkvWdaavvlvkylekklakelganelsklsvlELGsGtGlv 60 
                      g k W+ ++ lv  l+ ++ kel     + ++ +ELG Gt l 
       CCD23402.1 131 GLKSWECSIDLVDALNDTSYKEL----NQFNTFVELGCGTSLP 169
                      56678888887777777665544....578899*******874 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.00061
  Methyltransf_16 106 dWgeelee...dllekeevDlilaaDcvYledslelLvkvLkellkkeskv 153
                      +Wg   ++    ++ + +  l+l +  +Y+ + l+ ++++L +l  + s++
       CCD23402.1 267 SWGRTFTKllhTIIPADQNILVLTSETIYQPENLPVIAETLLDLKLSYSSI 317
                      566554430003444444559*********************997766654 PP

>> DUF4898  Domain of unknown function (DUF4898)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.8e-05      0.16      12      51 ..     258     296 ..     248     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.8e-05
     DUF4898  12 kikfvkkislkiIsdyekffnfilPkdkkivvvvpsdled 51 
                 +i ++ +is +    + k++ +i+P d++i+v+ ++ + +
  CCD23402.1 258 NI-NIHFISGSWGRTFTKLLHTIIPADQNILVLTSETIYQ 296
                 55.77788888888899*****************997755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2523.96
//
Query:       CCD23403.1  [L=113]
Description: hypothetical protein NDAI_0B03690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-32  110.3   0.3    7.6e-32  110.2   0.3    1.0  1  COX4      Cytochrome c oxidase subunit IV
     0.0069   16.2   2.4        4.9    7.0   0.0    3.1  3  B12D      NADH-ubiquinone reductase complex 1 MLRQ subunit


Domain annotation for each model (and alignments):
>> COX4  Cytochrome c oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.3   8.4e-36   7.6e-32      23     135 ..       4     109 ..       1     112 [. 0.94

  Alignments for each domain:
  == domain 1  score: 110.2 bits;  conditional E-value: 8.4e-36
        COX4  23 reqseeikaLkekekgdWkeLsleEkkalyrisFgqtlpemkaptk.ewkkvlggvlillglslllfllirlfvagpvpkTlskewqeaqlermldlki 120
                 +eq+e+ ++L+e++k +W++L+ +Ek+a++ is+g+++p+++ + k + + +++gv+i+l++sl lf++ir+f ag++pkT++kewq ++ e+++++++
  CCD23403.1   4 TEQEELATKLAERQKLPWNQLTPNEKQAAWFISYGEWGPRRPIHGKgDVTYITKGVFIGLAVSLGLFAFIRQF-AGEPPKTMTKEWQLKSDEYLKSKNA 101
                 79******************************************999**************************.************************* PP

        COX4 121 npitGlsskwdyekk 135
                 np  G+       ++
  CCD23403.1 102 NPWGGY-------SQ 109
                 **5555.......44 PP

>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.3    0.0025        22      40      58 ..      17      35 ..      14      45 .. 0.80
   2 !    7.0   0.0   0.00055       4.9      10      31 ..      59      80 ..      58      88 .. 0.90
   3 ?    3.0   0.0      0.01        90      37      49 ..      97     109 ..      94     113 .] 0.82

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0025
        B12D 40 npepWnklknnkegkfyse 58
                 + pWn+l +n+++  + +
  CCD23403.1 17 QKLPWNQLTPNEKQAAWFI 35
                677***********99866 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00055
        B12D 10 vfigagvggavfylvRllltnP 31
                vfig++v++ +f  +R+    P
  CCD23403.1 59 VFIGLAVSLGLFAFIRQFAGEP 80
                8***************987666 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.01
        B12D  37 kknnpepWnklkn 49 
                 k++n++pW+ +++
  CCD23403.1  97 KSKNANPWGGYSQ 109
                 99******98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 900.29
//
Query:       CCD23404.1  [L=1141]
Description: hypothetical protein NDAI_0B03700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-42  143.1   9.2    5.6e-18   65.3   0.8    4.2  5  Ank_2     Ankyrin repeats (3 copies)
    3.2e-31  107.3   0.3    2.1e-09   37.8   0.0    4.8  4  Ank_4     Ankyrin repeats (many copies)
    3.4e-28   97.3   2.2    1.5e-08   34.7   0.0    5.1  4  Ank_5     Ankyrin repeats (many copies)
    5.2e-27   90.9   0.4    5.1e-06   26.4   0.3    7.1  7  Ank_3     Ankyrin repeat
    1.4e-25   88.6   3.7    3.9e-06   27.1   0.4    6.5  6  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.4   8.9e-15   3.2e-11      25      82 ..     354     418 ..     337     419 .. 0.88
   2 !   65.3   0.8   1.5e-21   5.6e-18       1      83 []     359     454 ..     359     454 .. 0.88
   3 !   17.2   0.0   1.6e-06    0.0059      20      82 ..     556     619 ..     543     620 .. 0.81
   4 !   46.6   0.1   1.1e-15   3.9e-12       1      61 [.     594     664 ..     594     688 .. 0.85
   5 ?   -4.0   0.0         5   1.8e+04      28      46 ..     945     959 ..     932     970 .. 0.68

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 8.9e-15
       Ank_2  25 ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlekgadinlk 82 
                  g+t L +A+ +g+ e++k L+e+       +dn g+++Lh Aa +ghl+ivklL+e++a++n++
  CCD23404.1 354 GGRTKLAIACDKGKFETAKRLIEEegydvndQDNAGNSALHEAALNGHLDIVKLLVEHDANVNIQ 418
                 58999*****************9667686556699***************************986 PP

  == domain 2  score: 65.3 bits;  conditional E-value: 1.5e-21
       Ank_2   1 LhlAakngnlelvklLl..egadpn.k..ngktaLhyAakngnleivklLleh...ad.....ndgrtpLhyAarsghleivklLlekgadinlkd 83 
                 L +A+ +g++e+ k L+  eg+d+n +   g++aLh Aa ng+l+ivklL+eh   ++         tpL+ A+ +g+l++v++Lle+ga+++l++
  CCD23404.1 359 LAIACDKGKFETAKRLIeeEGYDVNdQdnAGNSALHEAALNGHLDIVKLLVEHdanVNiqsyeMFQDTPLFDASANGYLDVVEYLLEHGANPTLTN 454
                 6899***999********999****83579**********************996633544434499*************************9986 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 1.6e-06
       Ank_2  20 adpn.kngktaLhyAakngnleiv.klLlehadndgrtpLhyAarsghleivklLlekgadinlk 82 
                 +d++ k+gk  L+ Aa+ gn   v k+L  h  +     L+ A+++gh++iv l+l  ga+in++
  CCD23404.1 556 SDVGsKEGKDKLFRAARDGNSTYVgKYLQ-HRGQPDFKSLMEAVKFGHEDIVSLFLAFGAQINKR 619
                 46664489999********9988978888.634446889*****************669**9975 PP

  == domain 4  score: 46.6 bits;  conditional E-value: 1.1e-15
       Ank_2   1 LhlAakngnlelvklLl.egadpn...kngktaLhyAakngnleivklLleh......adndgrtpLhyAa 61 
                 L+ A+k+g+ ++v l+l +ga +n   k+g+t L++A+ +g+le+vklL+++      +d++g+t+L+yA 
  CCD23404.1 594 LMEAVKFGHEDIVSLFLaFGAQINkrgKDGMTLLMLAVGRGHLETVKLLIKNnadvtaMDSNGNTALYYAE 664
                 89******99*************97544**********************977676666699********5 PP

  == domain 5  score: -4.0 bits;  conditional E-value: 5
       Ank_2  28 taLhyAakngnleivklLl 46 
                  +L+y +kn+    +++ l
  CCD23404.1 945 MPLYYIVKNQ----IRYVL 959
                 6888888885....55555 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   5.7e-13   2.1e-09       6      55 .]     360     409 ..     355     409 .. 0.91
   2 !   20.8   0.0   1.2e-07   0.00041       2      38 ..     425     460 ..     424     461 .. 0.96
   3 !   33.4   0.0   1.3e-11   4.6e-08       5      55 .]     594     643 ..     592     643 .. 0.95
   4 !   22.8   0.0   2.9e-08    0.0001      12      42 ..     634     663 ..     633     663 .. 0.97

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 5.7e-13
       Ank_4   6 hyaaisgrlelvrlLlek.gadinaqdnrsGetalhiAakrgnveilklLl 55 
                   a+ +g++e++++L+e  g d+n q ++ G++alh Aa++g+++i+klL+
  CCD23404.1 360 AIACDKGKFETAKRLIEEeGYDVNDQ-DNAGNSALHEAALNGHLDIVKLLV 409
                 56889***********877*******.888*******************96 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 1.2e-07
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGeta 38 
                  t+L+ a + g l++v++Lle+ga++  + n+ G+ta
  CCD23404.1 425 DTPLFDASANGYLDVVEYLLEHGANPTLT-NAKGRTA 460
                 599*************************9.******9 PP

  == domain 3  score: 33.4 bits;  conditional E-value: 1.3e-11
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 L  a+++g++++v l l++ga+in++  ++G+t+l  A+ rg++e +klL+
  CCD23404.1 594 LMEAVKFGHEDIVSLFLAFGAQINKR-GKDGMTLLMLAVGRGHLETVKLLI 643
                 567999********************.***********************8 PP

  == domain 4  score: 22.8 bits;  conditional E-value: 2.9e-08
       Ank_4  12 grlelvrlLlekgadinaqdnrsGetalhiA 42 
                 g+le+v+lL+ ++ad+ a  +++G+tal++A
  CCD23404.1 634 GHLETVKLLIKNNADVTAM-DSNGNTALYYA 663
                 9******************.**********9 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0082        30      10      43 ..     349     383 ..     344     383 .. 0.89
   2 !   29.2   0.4   2.2e-10   7.8e-07       5      45 ..     378     418 ..     374     424 .. 0.91
   3 !   26.6   0.0   1.5e-09   5.3e-06      18      54 ..     426     462 ..     419     462 .. 0.95
   4 !   34.7   0.0   4.2e-12   1.5e-08       3      56 .]     611     663 ..     591     663 .. 0.97

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0082
       Ank_5  10 nrldgggntpLhvAakygaadvvrlLl.argadln 43 
                  ++d gg t L +A+ +g ++ +++L+ ++g d n
  CCD23404.1 349 IYRDSGGRTKLAIACDKGKFETAKRLIeEEGYDVN 383
                 57899999*******************99999876 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 2.2e-10
       Ank_5   5 gpadvnrldgggntpLhvAakygaadvvrlLlargadlnlt 45 
                    dvn++d+ gn++Lh Aa +g++d+v+lL+++ a+ n++
  CCD23404.1 378 EGYDVNDQDNAGNSALHEAALNGHLDIVKLLVEHDANVNIQ 418
                 4569*********************************9987 PP

  == domain 3  score: 26.6 bits;  conditional E-value: 1.5e-09
       Ank_5  18 tpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 tpL  A+ +g++dvv++Ll++ga+++lt++ G+ta++
  CCD23404.1 426 TPLFDASANGYLDVVEYLLEHGANPTLTNAKGRTACE 462
                 9**********************************86 PP

  == domain 4  score: 34.7 bits;  conditional E-value: 4.2e-12
       Ank_5   3 ehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 + g a++n + ++g+t L++A+ +g+++ v+lL++++ad ++ ds+G+tal +A
  CCD23404.1 611 AFG-AQINKRGKDGMTLLMLAVGRGHLETVKLLIKNNADVTAMDSNGNTALYYA 663
                 556.999*********************************************98 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.3e-05     0.083       2      30 ..     355     383 ..     354     384 .. 0.96
   2 !   26.4   0.3   1.4e-09   5.1e-06       2      31 .]     389     417 ..     388     417 .. 0.96
   3 !    9.7   0.0    0.0004       1.4       3      29 ..     425     450 ..     423     452 .. 0.90
   4 ?    3.5   0.0     0.041   1.5e+02       2      26 ..     563     587 ..     562     589 .. 0.85
   5 !    8.9   0.0    0.0007       2.5       5      30 ..     593     617 ..     591     618 .. 0.93
   6 !   19.4   0.0   2.8e-07     0.001       1      29 [.     622     649 ..     622     651 .. 0.94
   7 ?   -1.9   0.0       2.3   8.4e+03       1       9 [.     655     663 ..     655     663 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.3e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+t L +A+  g++e +k L+e+ g dvn
  CCD23404.1 355 GRTKLAIACDKGKFETAKRLIEEEGYDVN 383
                 9*********************99***99 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 1.4e-09
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G+++Lh+Aa++g+l+ivk+L+e + a+vn+
  CCD23404.1 389 GNSALHEAALNGHLDIVKLLVE-HDANVNI 417
                 9*********************.9****97 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0004
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadv 29 
                  tpL+ A  +g l++v++Lle +ga++
  CCD23404.1 425 DTPLFDASANGYLDVVEYLLE-HGANP 450
                 69999999*************.8*997 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.041
       Ank_3   2 GetpLhlAarsgnleivkfLlenkg 26 
                 G   L++Aar gn ++v   l+++g
  CCD23404.1 563 GKDKLFRAARDGNSTYVGKYLQHRG 587
                 56689**********9999999876 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.0007
       Ank_3   5 pLhlAarsgnleivkfLlenkgadvn 30 
                  L++A+++g+ +iv ++l  +ga +n
  CCD23404.1 593 SLMEAVKFGHEDIVSLFLA-FGAQIN 617
                 69*****************.9**999 PP

  == domain 6  score: 19.4 bits;  conditional E-value: 2.8e-07
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadv 29 
                 +G+t+L+lA+  g+le vk+L++ ++adv
  CCD23404.1 622 DGMTLLMLAVGRGHLETVKLLIK-NNADV 649
                 69*********************.8**98 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 2.3
       Ank_3   1 nGetpLhlA 9  
                 nG+t+L++A
  CCD23404.1 655 NGNTALYYA 663
                 7*****998 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.24   8.5e+02       8      32 .]     361     387 ..     355     387 .. 0.86
   2 !   27.1   0.4   1.1e-09   3.9e-06       2      30 ..     389     418 ..     388     420 .. 0.95
   3 !   17.1   0.0   1.5e-06    0.0054       3      31 ..     425     454 ..     424     455 .. 0.93
   4 !    9.4   0.0   0.00043       1.5       6      30 ..     594     619 ..     594     621 .. 0.90
   5 !   23.9   0.1   1.1e-08   3.8e-05       1      31 [.     622     653 ..     622     654 .. 0.94
   6 ?    4.3   0.0     0.017        61       1      18 [.     655     668 ..     655     692 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.24
                 HHHHHTTHHHHHHHH..TTTSTTCBTT CS
         Ank   8 lAatngkkriiklLL..hGAnlnaldn 32 
                 +A+  gk + +k L+   G ++n +dn
  CCD23404.1 361 IACDKGKFETAKRLIeeEGYDVNDQDN 387
                 789999999******95599***9997 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.1e-09
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnal 30 
                 Gn++LH Aa ng+++i+klL+ h An+n++
  CCD23404.1 389 GNSALHEAALNGHLDIVKLLVeHDANVNIQ 418
                 9***************************98 PP

  == domain 3  score: 17.1 bits;  conditional E-value: 1.5e-06
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +TPL  A+ ng ++++++LL hGAn+++++
  CCD23404.1 425 DTPLFDASANGYLDVVEYLLeHGANPTLTN 454
                 69***999999***************9987 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00043
                 HHHHHHHTTHHHHHHHH.TTTSTTCB CS
         Ank   6 LHlAatngkkriiklLL.hGAnlnal 30 
                 L+ A+ +g+++i++l+L  GA +n +
  CCD23404.1 594 LMEAVKFGHEDIVSLFLaFGAQINKR 619
                 89999************88**99976 PP

  == domain 5  score: 23.9 bits;  conditional E-value: 1.1e-08
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 dG+T L+lA+ +g+++ +klL+ + A+++a d
  CCD23404.1 622 DGMTLLMLAVGRGHLETVKLLIkNNADVTAMD 653
                 9*********99**********778****988 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.017
                 TSBBHHHHHHHHTTHHHH CS
         Ank   1 dGnTPLHlAatngkkrii 18 
                 +GnT+L +A  n    ii
  CCD23404.1 655 NGNTALYYA-ENS---II 668
                 8*******5.333...43 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3244  (0.180936); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.50u 0.36s 00:00:01.86 Elapsed: 00:00:00.56
# Mc/sec: 6178.44
//
Query:       CCD23405.1  [L=282]
Description: hypothetical protein NDAI_0B03710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-68  229.9   0.4    4.1e-68  229.8   0.4    1.0  1  Porin_3   Eukaryotic porin


Domain annotation for each model (and alignments):
>> Porin_3  Eukaryotic porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.8   0.4   2.3e-72   4.1e-68       1     270 []       2     275 ..       2     275 .. 0.97

  Alignments for each domain:
  == domain 1  score: 229.8 bits;  conditional E-value: 2.3e-72
                 S---CCCCCHHHHHHHHCC.HTTTECEEEEEEEECCECCEEEEEEEETTTS-ECEEEEEEEEE..TCCCEEEEEECCCSCCEEEEEECCSSTTCEEEEE CS
     Porin_3   1 nPgtyedlgkeakdllpkd.YhfeglkldvtkktslgvaFqvshsfslgsgkvsysfeakykd..kgltltlkgntdndlsltarvneqlaeglklkls 96 
                 +P+ + d++k++++ll++d Yh + + ++v+++t++gv+F+v++++ +++g  ++++e+k+    +g tlt+ ++++n l++++++   la+glk++l 
  CCD23405.1   2 APPFFPDISKNINNLLNNDfYHSTPAAIKVNTTTNNGVKFTVNAKQPVKEGALQADVESKFFEktTGVTLTQGWSNQNRLNTKIELAS-LAPGLKSELI 99 
                 59***********************************************************9889***********************.9********* PP

                 EEE-TTT--EEEEEEEEEEETTEEEEEEEECTCEEEEEEEEEEECTSTEEEEEEEEEECTTTCCEEEEEEEEEEECSEEEEEEEEETTTEEEEEEEEEC CS
     Porin_3  97 aqltpekgkksakleldykgddftaslklgnsktpvvvasllqsvtpglalGaeavydtasgkltkyaaalsyaardwiaslqllnnggaltasyyqkv 195
                 +++tp+ g k+ak+++++ ++ f a+ +++++k+p++ ++l+++++ g+++Gae++yd+  g +++ya++l+y+ard++++l++ n++   +as+yq v
  CCD23405.1 100 TSYTPSVGAKNAKVNMSFVQPFFAAKGTFDIFKSPLFIGNLTLAHE-GVVGGAEFGYDITGGTISRYALCLGYSARDYNLALSI-NDARITSASFYQSV 196
                 **********************************************.************************************9.78************ PP

                 CTTEEEEEEEEEETTEE.EEEEEEEEEEEECTCEEEEEEEECTTEEEEEEEEEECTTEEEEEEEEEECCCT...EEEEE CS
     Porin_3 196 sekvevgaeltlnassq.estttlGakydldksttvkakidsngkvgllleqkLrpgvtltlsaelDhkkn...ahkfG 270
                 s+ ++vga++tln + + +  +++++ky+ d+ ++ kaki++ g + l+++q Lrpg+tl+++++lD  k+    hk+G
  CCD23405.1 197 SKILQVGAKATLNPQRGsNVGIEFATKYNPDPTSQIKAKINDGGLLTLSYKQDLRPGITLGVGTSLDALKLdepIHKLG 275
                 **************988466688***********************************************988888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2016.02
//
Query:       CCD23406.1  [L=1474]
Description: hypothetical protein NDAI_0B03720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.9e-124  415.5   9.4   1.9e-124  415.5   9.4    3.7  2  NUP214          Nucleoporin or Nuclear pore complex subunit N
     0.0011   18.4   0.1      0.003   16.9   0.1    1.7  1  DUF929          Domain of unknown function (DUF929)
     0.0012   18.2   2.0     0.0029   17.0   2.0    1.6  1  WD40_like       WD40-like domain
  ------ inclusion threshold ------
       0.12   13.2 110.6      0.081   13.8  16.9    5.9  6  Nucleoporin_FG  Nucleoporin FG repeat region
        1.8    8.0   5.6        1.5    8.2   0.7    2.2  2  Chordopox_G2    Chordopoxvirus protein G2


Domain annotation for each model (and alignments):
>> NUP214  Nucleoporin or Nuclear pore complex subunit NUP214=Nup159
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  415.5   9.4  5.4e-128  1.9e-124       2     359 .]      26     415 ..      25     415 .. 0.92
   2 ?   -1.7   4.0      0.36   1.3e+03      97     166 ..    1251    1326 ..    1216    1351 .. 0.54

  Alignments for each domain:
  == domain 1  score: 415.5 bits;  conditional E-value: 5.4e-128
                 E-S---TT---SS--B-EEEETTTTEEEEEETTEEEEEEHHHHHHHHHS....................SS--.....---SEEE.E-TTEEEEEEETT CS
      NUP214   2 kiLPsyneklPfasLqnldisnkkslyvaasGekvviGdlqkLrdvits...................edkae.....lefkwek.eikdviavkflnd 75 
                 ++LPsyneklPfasL+n+disn++sl++a+ G+k+++G+lq+Lrd +t                    edk+e     l+ +we  ei +vi+vk++++
  CCD23406.1  26 AVLPSYNEKLPFASLHNFDISNEQSLFAASCGGKTIVGNLQDLRDLVTTqskknaedgnddddndahlEDKTEaktklLSNIWESvEILNVIFVKIFEN 124
                 79********************************************98767888999999888777774555411112456799659********9999 PP

                 E..EEEEESSEEEEEESSSTT..EEEEEE-SS-..EE..EE.ETTEEEEEETTSEEEEEETT.....EEEECSEEEEEE-SSEEEEEETTS-EEEEEEE CS
      NUP214  76 e.vvlvstksellsldleels.eleeihklekd..lvelkl.lkstlllldsnnqLsaldlskkel.kslaenvasfDvledkLvvllkdksvqvfele 168
                 + v+++++++++++l+l + s ++e +++  ++   v+++  +++++l+l+ ++qL  ++l+ +e    l+e v +f+++ + L ++lk+ +++ ++++
  CCD23406.1 125 KnVLIITRDGDIMNLNLSSNSkDIEAVFSTSENdtFVDVQAtSNNSILFLNDKGQLYHFNLTSREAtILLEETVGTFNIVGTTLSAILKNGQIKLYKCQ 223
                 98***************998755888877644311556666799******************99985677889************************** PP

                 EEEE...EEE---HHHHTS-TTT.SEEEEEEESSSSEEEEEEES---SS-SS----EEEEEEEEETTEEEEEEESSS------S-----EEEEEEETSS CS
      NUP214 169 neeeekskelslPselkeelkde.yeplsikvLskqeylvvfGnkvseteedvsyDhklyivkkkdeevsfqesfDitPafgsvlryPtvyniilkgli 266
                 +++ +++  +++P+e+ke +++e y p+ i+ Ls++e+lvv+G++vse  edv+yD+k+yivk++ ++++fqesfDitPafgsvlryPt+y+i+l++li
  CCD23406.1 224 GTTLTEKAGFTIPTEVKESFNEEpYIPNGIQELSDNELLVVLGIEVSEATEDVMYDQKMYIVKHSGNNAEFQESFDITPAFGSVLRYPTFYDIQLPNLI 322
                 *******************9986699************************************************************************* PP

                 STT-EEEEEEETT-SB-EEE-SSSEEEESSGGGS-B--B-TTTSSB--ECEEEEE-S-------------------EEEEEETTSEEEEEEEE CS
      NUP214 267 eedknvnilasacsseitiwdskevvePsqDseravlPisketdnDtnPiGvalDvvtsGviaePCsGvDkidklpLiyiLnneGkLqieGly 359
                 e ++ +nil+sa +s++tiwdskev++PsqDseravlPi+ket+nDtnPiG+a+D++ +G+i ePC+GvD++++lpLiyiLnneG++qie ly
  CCD23406.1 323 ESTQTINILGSASASDLTIWDSKEVIQPSQDSERAVLPINKETNNDTNPIGMAMDISSTGTILEPCPGVDSLERLPLIYILNNEGNIQIEALY 415
                 ******************************************************************************************999 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.36
                  EEEEEE-SS-EE..EE...ETT...EEEEEETTSEEEEEETT....EEEECSEEEEEE-SSEEEEEETTS-EEEEE CS
      NUP214   97 leeihklekdlvelkl...lks...tlllldsnnqLsaldlskkelkslaenvasfDvledkLvvllkdksvqvfe 166 
                  +e+  k+  d ++ +l   +k+   +++   + +  + +d+ k+e+ ++++n++ +D l++ +  +l++k  +  +
  CCD23406.1 1251 IENLNKFFIDQSTPQLnkrTKKsiaNIYTWRIFEANTLYDILKEETGNINDNIMNVDQLNSTILSFLEKKFKELLN 1326
                  3333333333333333223222000344445555667799999999999999999999999988877665433333 PP

>> DUF929  Domain of unknown function (DUF929)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   8.3e-07     0.003      75     124 ..     394     446 ..     385     481 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 8.3e-07
      DUF929  75 aesWaLyiaLsryGnl..nlephySdpsdeypniPgLiFknftpnskv.efys 124
                  e+++L+++L++ Gn+  ++ +h+S ++ +  +iP+L+++ ++++++v +f+s
  CCD23406.1 394 LERLPLIYILNNEGNIqiEALYHTSAIKANKFEIPTLTYETSKSQENVpSFTS 446
                 5899************888889**********************888745665 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.0     8e-07    0.0029      44     110 ..     115     186 ..      86     221 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8e-07
   WD40_like  44 SvifvklldddlilvvtlDGtillsllenee.evene.kieedistvkv...iddklliGtnkGsiyvfskd 110
                  vifvk+ +++ +l+ t DG i++  l+ +   +e   +  e+ ++v+v    ++ +l   +kG++y f+  
  CCD23406.1 115 NVIFVKIFENKNVLIITRDGDIMNLNLSSNSkDIEAVfSTSENDTFVDVqatSNNSILFLNDKGQLYHFNLT 186
                 48********************999998666555543234444455544111588999***********987 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8  16.9   2.3e-05     0.081       6      81 ..     453     536 ..     442     542 .. 0.75
   2 ?    0.8  34.3      0.24   8.8e+02      12      91 .]     526     606 ..     522     626 .. 0.65
   3 ?    3.9  31.3     0.028     1e+02       3      91 .]     573     676 ..     571     676 .. 0.81
   4 ?    3.7  31.0     0.032   1.1e+02       3      90 ..     625     707 ..     607     708 .. 0.72
   5 ?    9.0  21.9   0.00071       2.5       1      83 [.     678     762 ..     677     781 .. 0.82
   6 ?   -0.9   3.0      0.86   3.1e+03      10      44 ..     959     992 ..     940    1004 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.3e-05
  Nucleoporin_FG   6 aatstsgglFGststt.atstgglFG....asstatatasggg....lfgatsqtaasgglFGstnattqtta...tgglFGstaata 81 
                     ++ ++++ +FG+t tt + ++++ FG    +  ++t+t+   g    +fg+++++ ++ ++FG+++ t+++++    ++lFG+t+ ++
      CCD23406.1 453 KSDEEKKTIFGATVTTtTDTASQPFGssisS--NNTQTTI--GkptfSFGSETKPISTPPAFGTPSFTSASKSenkPASLFGNTTIEN 536
                     56678899*****9998889999***75422..2222222..2234599**999999999999999888877778899****988655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.24
  Nucleoporin_FG  12 gglFGststt.....atstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqqttsgglFG 91 
                     ++lFG+t+ +     a +t++ FG++++ t+t++   +fg+   ++a+++ FG+++ +++t+++++ F + ++t++++t+   FG
      CCD23406.1 526 ASLFGNTTIEnpftsADKTQSPFGQTNKDTETKQPF-AFGT---NTATTPSFGTSAFAASTEQNKQPFSTVQTTNSTSTAAPAFG 606
                     567777776666666667777777555555555554.6666...66677777777777777667777777776666666666666 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.028
  Nucleoporin_FG   3 FG....aaatstsgglFGststt..atstgglFGasstatatasgg.glfgat..sqtaasgglFGstnattqtta.........tgglFGstaa 79 
                     FG    aa+t++++++F + +tt  +++++ +FG  +++  +++ g  +fg++   ++a ++++FG+++++++++a         +++ FGs a+
      CCD23406.1 573 FGtsafAASTEQNKQPFSTVQTTnsTSTAAPAFG--TPSFGQPTFGaPSFGTPsfGKPAFGTPVFGAAATNANPQAapafgkpafGTSTFGSIAS 665
                     66666669999999***99999877888889***..888888888879***9999999999**********999988888666666666775555 PP

  Nucleoporin_FG  80 taqqttsgglFG 91 
                        ++++++lFG
      CCD23406.1 666 PD-NKEASSLFG 676
                     44.488899999 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.032
  Nucleoporin_FG   3 FGaaatstsgglFGststt.atstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqqttsgglF 90 
                     FG  +++ ++ +FG+++t+ +++++ +FG  ++a  t++ g +  +   ++++++lFG+++  +++t+t++ FG+ a++a+ +t+++ F
      CCD23406.1 625 FG--KPAFGTPVFGAAATNaNPQAAPAFG--KPAFGTSTFG-SIAS-PDNKEASSLFGKSSFGAPSTSTSSPFGQFASNANGSTESSSF 707
                     55..5666677777777777777777777..4444444444.3333.789999999999999999988999999999999888888777 PP

  == domain 5  score: 9.0 bits;  conditional E-value: 0.00071
  Nucleoporin_FG   1 glFGaaatstsgglFGststt..atstgglFGasstatatasggglfgat..sqtaasgglFGstnattqttatgglFGstaataqq 83 
                     + FG a++++++++FG+ +++   ++ ++ F + +t  +t+ +++ fg+   + ++++++ FG+ ++ ++   ++ lFG t +++++
      CCD23406.1 678 SSFG-APSTSTSSPFGQFASNanGSTESSSFSKFATDPKTQGTSSPFGKLdsKVETTTKSPFGQLSSGNNIF-SKPLFGVTDNKESP 762
                     5799.99999999999999888888888999966666666666689999888889999999**999998876.99999999888754 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.86
  Nucleoporin_FG  10 tsgglFGststtatstgglFGasstatatasgggl 44 
                     t +  FGs++t +t +++ F + + +  +++g+ +
      CCD23406.1 959 TPTFKFGSAPTPETMGESPFSTFAGKLDQKTGS-S 992
                     344445555555555555555222222222222.2 PP

>> Chordopox_G2  Chordopoxvirus protein G2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.4     0.042   1.5e+02     154     202 ..     109     157 ..      93     163 .. 0.88
   2 ?    8.2   0.7   0.00042       1.5      37     100 ..    1309    1372 ..    1302    1393 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.042
  Chordopox_G2 154 skvtffaylvakivsNkdievvVtekCidellkeenaellkkvfdkgsd 202
                   ++v+ ++++  ki  Nk++ ++  +  i +l  ++n + +++vf+++++
    CCD23406.1 109 ESVEILNVIFVKIFENKNVLIITRDGDIMNLNLSSNSKDIEAVFSTSEN 157
                   6788999999*********************999**********99884 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00042
  Chordopox_G2   37 leellaeflnkkklkkiskvleckdlleEialefpddilrelvrlrlrkfsktvkrsykLtaea 100 
                    l+  + +fl+kk  +++ k +e+k+    ++  f++d + +l rlrl++ + + k  +k++++ 
    CCD23406.1 1309 LNSTILSFLEKKFKELLNKSVEIKEEYTQLQCLFDNDSADKLKRLRLHQGQLQSKLRKKMSKTH 1372
                    4667899****************************************99888877777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2033  (0.113392); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:00.54
# Mc/sec: 8244.78
//
Query:       CCD23407.1  [L=386]
Description: hypothetical protein NDAI_0B03730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.1e-67  226.3   0.0    7.1e-67  226.1   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II
     0.0064   15.4   0.0     0.0092   14.9   0.0    1.2  1  Alliinase_C    Allinase
  ------ inclusion threshold ------
        0.1   13.2   0.1       0.31   11.7   0.1    1.8  2  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.1   0.0   1.2e-70   7.1e-67       5     361 ..      31     374 ..      27     376 .. 0.91

  Alignments for each domain:
  == domain 1  score: 226.1 bits;  conditional E-value: 1.2e-70
                    ESSSSSTTSTTSSHHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC......TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT- CS
  Aminotran_1_2   5 nLgsneylgdsgkptlpevakaekegalaggtlneygpidglpeleealakflg......rseklklkreaavvvgsGagaliealifllklnpgd 94 
                     L +ne+ ++    + +       +  +++++l++y++++ + e+++a+a++ +       ++ ++l+ e ++++g G+++ i+a+i++++++ ++
     CCD23407.1  31 LLDANENAHG----PTQQ----GLD--ASNSELHRYPDPH-QLEFKTAMASYRNktstykAENLTPLTSE-NLCLGVGSDESIDAIIRATCVPGKE 114
                    5666666666....4443....444..6788*********.*************9888777779999999.************************* PP

                    EEEEEESS-THHHHHHHHTTSEEEEEEB.EETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEET CS
  Aminotran_1_2  95 eilvpdptyasyknilrlsggevvrypl.yseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDea 189
                    +ilv  pty++y+ +++++++e+v++pl y+ ++f++d e++++ l+++p     +k+++++sp NPtG+ +  e +e++l+ ++    l++vDea
     CCD23407.1 115 KILVLPPTYSMYSVCAEINDIEIVECPLlYKNNSFQMDTESVLTVLQNDP----LIKLLFITSPGNPTGARIETERIETVLQNWT--DGLVVVDEA 204
                    ***************************63777****************87....89************************66666..8******** PP

                    TTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 190 YagfvfgsldavatranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqseleemrqrlqkrr 285
                    Y +f+ g     +t ++v ++pnl+++++lsK+fGlaG+R+G++++++++++ l+ +++p+++s l++ ++++a+++++l    +e ++++++++ 
     CCD23407.1 205 YIDFCGG-----STAPLVTKYPNLVTLQTLSKSFGLAGIRLGMTYASKDLAKILNAMKAPYNISRLASDFALKAVQHDNLQ--LMESNAKKINDEK 293
                    *******.....679**************************************************************9986..9************ PP

                    HHHHHHHHHS....TEEEECCSCSSEEEEEETHH..CHHHHHHHHHHTCTEEE.EEGGGGTSTTEEEEECTTS-HHHHHHHHH CS
  Aminotran_1_2 286 kelrdeLael....glkvlasqsgmflltdlsae..takelskkLleevgvyv.tpgtsftvpgrlRitvAglteeeleelve 361
                    ++l  eL++l    +  v + +++++++++ +     ak+l+ +L++e gv+v ++gt+ +++g+lRitv  +t+ e+++l++
     CCD23407.1 294 HRLLRELTSLdyvdDQYVGGLDANFIMIRVNKGDntLAKKLYLALATESGVVVrFRGTELGCSGCLRITV--GTPPENDKLIK 374
                    **************999**********99988886688888888****6665527***************..99999999886 PP

>> Alliinase_C  Allinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.5e-06    0.0092      70     206 ..      92     243 ..      86     284 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.5e-06
                  EEECHHHHHHHHHHHHHHHH..SSSSSEEEEE-SS--THHHHHTTTT-BTTEE.........EEEESTT-.--S..S-EEEE..EESS-TTT--.--. CS
  Alliinase_C  70 vvGtGstqLlqalvyalspeasseskpvkvvaavPyysvykeqtslldsklyk.........weGdaaayvkkknpeefiel..vtsPnnPdgl.lr. 154
                   +G+Gs + ++a++ a          + k++   P ys+y   +++ d +  +         ++ d+++  +  ++++ i l  +tsP nP g+ +  
   CCD23407.1  92 CLGVGSDESIDAIIRATCVP-----GKEKILVLPPTYSMYSVCAEINDIEIVEcpllyknnsFQMDTESVLTVLQNDPLIKLlfITSPGNPTGArIEt 184
                  56677777777766665544.....556677777778888766665444332211110011134444444444455666665338******9963332 PP

                  ...----.-TT-EEEEEE-TT-...STTTS---S-B--SEEEEEHHHHHS-GGG-EEEE CS
  Alliinase_C 155 ...eavv.kgseakviyDlayY...WPhytpitskadedimLftlskltGhaGsrlGWa 206
                     e+v+ + +++ v++D ay        +p+ +k  + + L tlsk  G aG+rlG +
   CCD23407.1 185 eriETVLqNWTDGLVVVDEAYIdfcGGSTAPLVTKYPNLVTLQTLSKSFGLAGIRLGMT 243
                  12245665668899******96222357889999***********************76 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.1   1.3e+04      47      67 ..     183     204 ..     172     212 .. 0.76
   2 ?   11.7   0.1   5.2e-05      0.31      46     105 ..     280     340 ..     245     348 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.1
                    B---HHHHHHHH.S-EEEEE-S CS
  NAD_binding_3  47 ltldlddliahl.dpdvvVEca 67 
                    +t++++ +++++ d  vvV+ a
     CCD23407.1 183 ETERIETVLQNWtDGLVVVDEA 204
                    5777888888885688888865 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5.2e-05
                    CB---HHHHHHHHS-EEEEE-S--HHHHTTHHHHHHTTEEEE-S--CGGG.-HHHHHHHTS CS
  NAD_binding_3  46 altldlddliahldpdvvVEcasseavaelvlkaLkagkdvvtankgala.dealyeeLre 105
                    +l+++  + i++++ +++ E++s ++v ++++  L a++ ++ +nkg ++  ++ly +L++
     CCD23407.1 280 QLMESNAKKINDEKHRLLRELTSLDYVDDQYVGGLDANFIMIRVNKGDNTlAKKLYLALAT 340
                    3333334445555899*******************************99977777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2692.72
//
Query:       CCD23408.1  [L=402]
Description: hypothetical protein NDAI_0B03740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.027   13.7   0.2      0.042   13.1   0.2    1.2  1  MIG-14_Wnt-bd  Wnt-binding factor required for Wnt secretion
        3.2    8.3  15.2       0.57   10.7   3.3    2.5  2  Alpha_GJ       Alphavirus glycoprotein J
        7.3    7.2  13.5      0.058   14.0   1.6    2.6  2  Pex14_N        Peroxisomal membrane anchor protein (Pex14p) c


Domain annotation for each model (and alignments):
>> MIG-14_Wnt-bd  Wnt-binding factor required for Wnt secretion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2     7e-06     0.042     183     226 ..      84     130 ..      67     153 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7e-06
  MIG-14_Wnt-bd 183 kdpfysiwssal...ilkilaiilavlyflyLlylifrsfseirskr 226
                     +p+++ ++++    +++++ +i+++++flyL  + ++s+ + r+ +
     CCD23408.1  84 DNPYITNDDKYVqstVFIAVGVIVGFIFFLYLALWAITSYLNYRTAK 130
                    4666655555223569***************************9955 PP

>> Alpha_GJ  Alphavirus glycoprotein J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.3   9.5e-05      0.57      29      78 ..      22      68 ..      10     116 .. 0.76
   2 ?    2.8   4.2     0.027   1.6e+02      41      77 ..     218     255 ..     194     267 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.5e-05
    Alpha_GJ 29 ttatvgaanaaavanatganatsaaaastiaatvgapptdstvaaetPgp 78
                 t+t  ++++++++ +t++++ts++++s +a t+++p+   t  +  P +
  CCD23408.1 22 VTTTS-SSTSTSTSPSTSQESTSTHSGSNSAITTTSPSPSIT--SSSPSS 68
                34344.4444566778999999*9999999998888875543..333333 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.027
    Alpha_GJ  41 vanatganatsa.aaastiaatvgapptdstvaaetPg 77 
                 v+n  +  + sa ++a +++ t ++p +++t+ ++tP 
  CCD23408.1 218 VNNNLNHISNSAiTVANSTTITNTTPGSNTTTGTNTPP 255
                 33333322222212333333344556666666666653 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.6   9.8e-06     0.058      53     148 ..      28     116 ..      10     121 .. 0.46
   2 ?   -2.2   4.6      0.95   5.7e+03      60     115 ..     235     275 ..     152     309 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.8e-06
     Pex14_N  53 sesavaassaseqa..qeesasssatpqpqaasqtsqsspspsppaqqqqqqyrpPivtypefltkppkppppPlr......twrdllitatalaglga 143
                 s+        s+++  +++++s+s+++ +++a +t+++sps ++++++++++++ P +t p         +  P++        ++++i++++++g+ +
  CCD23408.1  28 ST--------STSTspSTSQESTSTHSGSNSAITTTSPSPSITSSSPSSSTTTVIPTITPPS-------INDNPYItnddkyVQSTVFIAVGVIVGFIF 111
                 11........1111112222222222222222222222222223333333333455555432.......233334333333377889999999999999 PP

     Pex14_N 144 glygl 148
                  ly +
  CCD23408.1 112 FLYLA 116
                 99865 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.95
     Pex14_N  60 ssaseqaqeesasssatpqpqaasqtsqsspspsppaqqqqqqy.....rpPivtypeflt 115
                 s++ ++++  s++++ t++p+++                          ++P  +  e+++
  CCD23408.1 235 STTITNTTPGSNTTTGTNTPPTN--------------------FrhslfISPTARVIEQQQ 275
                 11111112222222222222211....................022222333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1638  (0.0913604); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 2827.80
//
Query:       CCD23409.1  [L=240]
Description: hypothetical protein NDAI_0B03750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-57  192.0   0.2    7.5e-57  191.5   0.2    1.3  1  Ras        Ras family
    1.8e-23   83.0   0.2    4.3e-23   81.8   0.0    1.6  2  Roc        Ras of Complex, Roc, domain of DAPkinase
    2.4e-09   36.9   0.1    4.7e-09   35.9   0.1    1.6  1  Arf        ADP-ribosylation factor family
      8e-05   21.9   0.2    9.9e-05   21.6   0.2    1.1  1  G-alpha    G-protein alpha subunit
     0.0007   19.0   0.3    0.00095   18.6   0.3    1.3  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
    0.00072   19.0   0.0     0.0012   18.3   0.0    1.5  1  SRPRB      Signal recognition particle receptor beta subunit
     0.0022   18.1   0.0      0.004   17.2   0.0    1.7  1  MMR_HSR1   50S ribosome-binding GTPase
     0.0045   17.2   0.0       0.29   11.4   0.0    2.3  2  AAA_28     AAA domain
  ------ inclusion threshold ------
       0.99    9.9   6.1        4.6    7.7   6.1    2.1  1  ABC_tran   ABC transporter


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.5   0.2   3.8e-60   7.5e-57       1     160 [.      18     219 ..      18     221 .. 0.99

  Alignments for each domain:
  == domain 1  score: 191.5 bits;  conditional E-value: 3.8e-60
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeik 98 
                 K+v++Gd+++GKtsll+ f++++F+e ye+T+ +++y+++i vd+k+++l++wDTAGqeef++lr+l+y+d++ i+l+++i+sr+s+ nv+ kwv ei 
  CCD23409.1  18 KIVILGDGSCGKTSLLNVFTRGYFPEVYEPTV-FENYIHDIFVDNKHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSIDSRDSLANVEhKWVGEIA 115
                 9*******************************.**********************************************************9******* PP

                 HHSTTTSEEEEEEETTTGGG..........................................G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHH CS
         Ras  99 rvaeenvpivLvGnKvDlee..........................................kravsteegeelakelg.lkfletSAktnenveeafe 154
                 +++e nv++vLv+ K+Dl++                                          k  ++++eg ++ak+++ l++le+SAk n++v+eaf+
  CCD23409.1 116 DHCE-NVNLVLVALKCDLRNnenesnvinpgmiqqqqsnnnsnnnipqlqqqqqeqnqqfkkKDLITYDEGVAMAKKIKaLRYLECSAKLNKGVNEAFT 213
                 ****.7*******************************************************999***************9******************* PP

                 HHHHHH CS
         Ras 155 ellrei 160
                 e++r +
  CCD23409.1 214 EAARVA 219
                 **9875 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   2.2e-26   4.3e-23       1     120 []      18     132 ..      18     132 .. 0.88
   2 ?   -2.1   0.1       2.2   4.4e+03      30      32 ..     168     170 ..     146     195 .. 0.53

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 2.2e-26
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE..GHHH.HCH. CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd..srss.enl. 95 
                 K+v++Gd++ GKtsll+ f+++ f e +++t+  ++++  +     v+     k+++l++WDtaGqe+f+ l++l +++ + ++l++   sr+s +n+ 
  CCD23409.1  18 KIVILGDGSCGKTSLLNVFTRGYFPEVYEPTVFENYIHDIF-----VD----NKHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSidSRDSlANVe 107
                 9*******************************999987654.....22....2689*****************************98643554446764 PP

                 HHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  96 keWlkelkkvagkspvilvgnkiDl 120
                 ++W+ e+ +++++ +++lv+ k+Dl
  CCD23409.1 108 HKWVGEIADHCENVNLVLVALKCDL 132
                 78*********************95 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.2
                 TTT CS
         Roc  30 sti 32 
                 +  
  CCD23409.1 168 QEQ 170
                 111 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.1   2.4e-12   4.7e-09      13     138 ..      15     143 ..       6     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2.4e-12
                 TEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEE.EEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHH CS
         Arf  13 kelrilllGLDnaGKtTilkklkleelvt.tvPTigfn.veelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkal 107
                  e +i++lG  + GKt +l+ ++ + + +   PT+  n ++++ +  k++++++wD  Gqe+  +l +  +++t++++ +     r+ l++ +++    
  CCD23409.1  15 IERKIVILGDGSCGKTSLLNVFTRGYFPEvYEPTVFENyIHDIFVdnKHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSIDSRDSLANVEHKWVGE 113
                 4789**********************988578**988746776543399*******************9999999887665444455566655554433 PP

                 CTSGCCTTSEEEEEEE-TTSTTSS-HHHHHH CS
         Arf 108 leeeelkevallvlaNKqDlpealseeelre 138
                 +  ++ ++v l+++a K Dl++  +e+++ +
  CCD23409.1 114 I-ADHCENVNLVLVALKCDLRNNENESNVIN 143
                 3.356789999***********999988765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2     5e-08   9.9e-05      18     126 ..      11     176 ..       6     223 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 5e-08
                 XXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.................................. CS
     G-alpha  18 rkkkrevkllllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsiktilealesleselsesf........................... 89 
                  kk  e k+++lG +++GK+++l+ + + y +++ e     + ++i+  +v++ +  l   ++ ++e  +++                           
  CCD23409.1  11 SKKPIERKIVILGDGSCGKTSLLNVFTRGYFPEVYEP--TVFENYIHDIFVDNKHITLSLWDTAGQEEFDRLrslsysdthtimlcfsidsrdslanve 107
                 44445569**********************9999888..558899999999999999999999766665555778889999999999999999999999 PP

                 .........................................HHHC-SS-SCCCS-HCHHHH..........HHCCHHC CS
     G-alpha  90 .........................................elqelkerldplkkveasliaklssateeeqeiefnp 126
                                                          ++q+++++ +++ +++++  +         q+ +f++
  CCD23409.1 108 hkwvgeiadhcenvnlvlvalkcdlrnnenesnvinpgmiqQQQSNNNSNNNIPQLQQQQQE---------QNQQFKK 176
                 99999999888888888888888777665555555555555333333333333333333222.........2222222 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.3   4.8e-07   0.00095       1     148 [.      18     157 ..      18     198 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 4.8e-07
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvg..vliyVfDvesreleedlet 97 
                 k++++G ++ GKts+ ++    y ++ + + ++  +  ++ +  ++++tl+lwD  Gqe+f        ++  +++     l + +D++  +   ++  
  CCD23409.1  18 KIVILGDGSCGKTSLLNVFTRGYFPE-VYEPTVFENYIHDIFVDNKHITLSLWDTAGQEEFDRL-----RSLSYSDTHtiMLCFSIDSR--DSLANV-- 106
                 7999*************999999986.55555555666666768999***********998655.....33344444400455555555..433333.. PP

   Gtr1_RagA  98 lkeilealrqyspeakvfvlihKmDliqedereeifeerkeeireeiekle 148
                  ++ + ++ ++ +++++     K+Dl ++++++++++  + + ++  ++ +
  CCD23409.1 107 EHKWVGEIADHCENVNLVLVALKCDLRNNENESNVINPGMIQQQQSNNNSN 157
                 356788888888888888888899999999999988876655555555444 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.2e-07    0.0012       4     102 ..      17     121 ..      14     181 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.2e-07
                 -EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEET.....TS-HHHHHHH CS
       SRPRB   4 pavllvGlsdsGKTslftrLttdsvkktvtSq..essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDS.....tidpkevkev 95 
                 ++++++G   +GKTsl++  t + + + +     e+ + + + ++k+ +l l D  G+e++   l       ++   l f +DS      ++ k v e+
  CCD23409.1  17 RKIVILGDGSCGKTSLLNVFTRGYFPEVYEPTvfENYIHDIFVDNKHITLSLWDTAGQEEFDR-LRSLSYSDTHTIMLCFSIDSrdslaNVEHKWVGEI 114
                 789********************6666654433488998888999**************9953.33322244447789999998333333566666666 PP

                 HHHHHHH CS
       SRPRB  96 AEllyei 102
                 A+   ++
  CCD23409.1 115 ADHCENV 121
                 6665555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     2e-06     0.004       1      93 [.      18     106 ..      18     217 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2e-06
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGC..............SSHHHHHHHHHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGl..............iegaseekglgkaflaleeadlillvvd 84 
                 +++i+G    GK++L+n  t+    +v +       i  + v+ k+  + l+Dt+G                                  + ++++ +d
  CCD23409.1  18 KIVILGDGSCGKTSLLNVFTRGyFPEVYEPTVFENYIHDIFVDNKHITLSLWDTAGQeefdrlrslsysdtH------------------TIMLCFSID 98 
                 689******************9445554433333344444455555899*******3222222333333330..................344555555 PP

                 TTTTCSHHH CS
    MMR_HSR1  85 aseeklkpl 93 
                 ++ ++l+++
  CCD23409.1  99 SR-DSLANV 106
                 33.222222 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00014      0.29       1      35 [.      18      58 ..      18      80 .. 0.73
   2 ?    3.7   0.0     0.032        64      59     121 ..     162     229 ..     135     235 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
      AAA_28  1 kivitGgestGKTtlleaLaar......gypvvpEaareil 35
                kivi+G  s+GKT+ll+ +++       + +v++ +  +i+
  CCD23409.1 18 KIVILGDGSCGKTSLLNVFTRGyfpevyEPTVFENYIHDIF 58
                79***************999653333322223355555555 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.032
      AAA_28  59 vleeql.eeeaaaaankvlfcDrglldtlaYarayggeaeaelea..aarekrydl.vfllpp.apei 121
                 +l++q  e+ ++ ++++++ +D g+         ++ e++a+l++   +++ + ++  +l  p +pe 
  CCD23409.1 162 QLQQQQqEQNQQFKKKDLITYDEGVAMAKKIKALRYLECSAKLNKgvNEAFTEAARvALLAGPqVPES 229
                 344444045555599*********99888777777777778877764333444444244444534455 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.1    0.0023       4.6      12      38 ..      17      43 ..      10     216 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0023
                SEEEEEESTTSSHHHHHHHHTTSS--S CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllagllkpt 38
                +k++i+G+  +GK++Ll+++++ + p+
  CCD23409.1 17 RKIVILGDGSCGKTSLLNVFTRGYFPE 43
                6899*****************999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2023  (0.112834); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 1654.11
//
Query:       CCD23410.1  [L=441]
Description: hypothetical protein NDAI_0B03760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0044   17.4   0.5      0.011   16.1   0.1    1.9  2  Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
     0.0067   16.4   0.1       0.02   14.9   0.1    1.7  1  Noelin-1        Neurogenesis glycoprotein
  ------ inclusion threshold ------
       0.43   10.7   2.4        1.1    9.4   0.0    2.2  2  DUF4677         Domain of unknown function (DUF4677)
        1.2    7.4   8.3        1.9    6.8   8.3    1.3  1  Menin           Menin
        3.2    7.0  11.6        4.6    6.5  11.6    1.3  1  NOA36           NOA36 protein


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   3.1e-06     0.011       1      64 [.     138     201 ..     138     218 .. 0.82
   2 ?   -2.4   0.0       1.8   6.6e+03      57      70 ..     365     378 ..     358     392 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.1e-06
                     SSSS-HHHHHHHHHHHHH..HHHHHHH..SS--HHHHHHHHHHHH.HHC----HHHHHHHHHHHH CS
  Myb_DNA-bind_4   1 rdkWteeetklLieawgerilelrfqergkkrnkklWeevaeama.ergykrspeqCkeKienLk 64 
                     r+kW e e   +++++ ++ + l + e   k  k+ W + ++ ++ e gy+r+  qC+++++ L 
      CCD23410.1 138 RKKWREPEDISFLKVILNNAQLLTYVE-YFKPMKNFWIKLSQILRqEYGYDRNSRQCHDRFKVLY 201
                     578999999999999988767777766.66777888********8567*************9885 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
                     HHHHHHHHHHHHCS CS
  Myb_DNA-bind_4  57 keKienLkkrYkke 70 
                     ++ i+ L+ rY++ 
      CCD23410.1 365 RNDINVLNTRYQEQ 378
                     44444555555433 PP

>> Noelin-1  Neurogenesis glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   5.5e-06      0.02      33      77 ..     346     390 ..     336     396 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 5.5e-06
    Noelin-1  33 srDarsrqlrqllekvqnlsqsievldlRtsrdlqyvrktetllk 77 
                  rD++ r + +l+e++  l + i+vl+ R +++ +y+++  ++++
  CCD23410.1 346 YRDPQIRIIEDLKEQITALRNDINVLNTRYQEQANYIQTIWSIIQ 390
                 69************************************9988876 PP

>> DUF4677  Domain of unknown function (DUF4677)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.0      0.51   1.8e+03     107     151 ..      72     113 ..      57     128 .. 0.56
   2 ?    9.4   0.0   0.00031       1.1      42      75 ..     352     385 ..     344     395 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.51
     DUF4677 107 nkgsdrgarrdpetpspgvgdisllgrdpkeeeddeeeekevpss 151
                 n+g+   +  + ++ s   ++ +    d ++++dd+e   e ps 
  CCD23410.1  72 NNGNSDSTNNENNVNSTNNANNNDNDNDNDNDNDDDE---ESPSY 113
                 4455555455555555444444443334444444444...44554 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00031
     DUF4677  42 elmehlkaqlqalfedvramrgaldeqashiqvl 75 
                  ++e lk q+ al +d+  +    +eqa +iq +
  CCD23410.1 352 RIIEDLKEQITALRNDINVLNTRYQEQANYIQTI 385
                 579*****************************76 PP

>> Menin  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.3   0.00053       1.9     522     591 ..      74     140 ..      11     175 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00053
       Menin 522 plaeqkqkkageeserreannnnnsksnsekeadkkasttsnggeasstpsseseaavespsehkeakle 591
                 + +++  ++  + +++++annn+n ++n++++ d ++s +   g+ + +ps++ + +++s++  k ++++
  CCD23410.1  74 GNSDST-NNENNVNSTNNANNNDNDNDNDNDNDDDEESPSYSIGTQD-QPSGSNNINMSSQHV-KHTRKK 140
                 222222.2222222222334444444444444444455544444444.467777667766643.222222 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  11.6    0.0013       4.6     247     294 ..      69     109 ..      23     140 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0013
       NOA36 247 ddddeedsdydaylkalasgddeddegdedddddddeedddeeedded 294
                 d d++++sd ++  ++++s+ ++++++d+d+d+d+      +++dde+
  CCD23410.1  69 DLDNNGNSDSTNNENNVNST-NNANNNDNDNDNDN------DNDDDEE 109
                 11112222222222222221.11111111111111......1111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1351  (0.0753528); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3318.86
//
Query:       CCD23411.1  [L=571]
Description: hypothetical protein NDAI_0B03770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-41  141.1  28.6    1.2e-36  126.4  14.7    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4  14.7   6.8e-41   1.2e-36       2     275 ..      85     383 ..      84     387 .. 0.83
   2 !   20.7   5.9   9.2e-09   0.00017      62     192 ..     427     555 ..     420     570 .. 0.80

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 6.8e-41
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlga 99 
                 ++++f+s++a +i++p+l+  + ++++i++  +++ +++y++++++a  ++G l+d +Grr+v+l ++l+++ + +++l + +++  ++vlr+lq++g 
  CCD23411.1  85 AFTGFFSSIAGAIYYPVLS-VIENEFNITEEMVNITVVVYFIFQGIAPSIMGGLADSMGRRPVVLSSVLVYCCA-CIGLACsHTYAQIIVLRCLQAAGI 181
                 799****************.9*****************************************************.55552435555************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 + ++++   ++ d++++ erg ++g++s++  +G+++g+l+g+ l++ ++Wr++f++lai s +++v  ++ lpe++++   + ++             
  CCD23411.1 182 SPVIAINSGIMGDITTRAERGGYVGYVSGFQVIGSAFGALIGAGLSATWSWRSIFWFLAIGSGVCLVASIIILPETKRTVVGNGSIMPPnrisrapsly 280
                 *****************************************************************9976677766666666665555557777777777 PP

       MFS_1 189 ..................kgtgpaplvpawkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagr 266
                                   + + + +++  +k+l  +     + i l+++++ fs+     t l + l +++gl+ +  +gl +  +++ ++i+ + +gr
  CCD23411.1 281 fpplrrklhldnpdletkEPHINVNIFASFKILTIPE----VTILLFVAGLQFSTntvHQTALSTVLSKRYGLT-VAKIGLCYLPSGICTLISVVTSGR 374
                 7777776777766665554444444444788888888....44444444444444445888888889*******.999999999999999999999*** PP

       MFS_1 267 lsdrlgrrr 275
                 +++ + rrr
  CCD23411.1 375 YLNWIYRRR 383
                 999866555 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 9.2e-09
       MFS_1  62 rr.vlllglllfalglllll.fa....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravf 154
                 r    l++lll+a+g ++ + ++    ++l ++lv   + +l++ ++++ + +li+d+fp  + + a+++l+++  l +++  +  + ++ +  + +vf
  CCD23411.1 427 RLePALVTLLLSASG-YVSFgWCisvkAPLAAVLVTSGFGSLFSNCILTFSSTLIVDLFPS-KSSTATACLNLFRCLMSAILIACLSKMSIAMTYGGVF 523
                 555667777777777.333334323467777888888899999*****************9.*****************999888888888999***** PP

       MFS_1 155 yilaivsllafvlfllllpeepperkrkspkeeekgtg 192
                  +l+++++ + +l  ll+p ++ +    + ++e    +
  CCD23411.1 524 TFLGALAASSSLL--LLFPIRHGKALALKRRKE----E 555
                 **********998..999888888777777776....3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4576.56
//
Query:       CCD23412.1  [L=408]
Description: hypothetical protein NDAI_0B03780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1264  (0.0705003); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3004.09
//
Query:       CCD23413.1  [L=445]
Description: hypothetical protein NDAI_0B03790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-98  327.3  12.5    5.4e-98  327.3  12.5    1.5  2  SUN       Beta-glucosidase (SUN family)
  ------ inclusion threshold ------
        1.9    7.0   5.8        2.4    6.6   5.8    1.0  1  Macoilin  Macoilin family


Domain annotation for each model (and alignments):
>> SUN  Beta-glucosidase (SUN family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.4       0.5   4.5e+03     113     129 ..     136     153 ..     109     175 .. 0.47
   2 !  327.3  12.5    6e-102   5.4e-98       1     245 []     190     432 ..     190     432 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.5
         SUN 113 TdyPGtEa.mliptevea 129
                  +   tE+   ipt++++
  CCD23413.1 136 IQTTSTEQaVQIPTTTST 153
                 222333321234444432 PP

  == domain 2  score: 327.3 bits;  conditional E-value: 6e-102
         SUN   1 dgkikCsefpsdeglvavdalglgGwagiqdvkge.sqeCkegsyCsyaCppGylktqwpsaqgatgssvGGLyCnkdGklektnkdskklCekgagkv 98 
                 dg+i+Cs+fps++g+++vd+l++gGw+g+++++++ + +C egsyCsyaC+pG++ktqwps+q+++g+svGGL+C ++G+l+++n+ds++lCe+g++++
  CCD23413.1 190 DGTIRCSQFPSGQGVISVDWLNEGGWSGVENTDTStGGSCAEGSYCSYACQPGMSKTQWPSDQPSDGRSVGGLLC-QNGYLYRSNTDSNYLCEWGVDAA 287
                 689****************************98887889************************************.69********************* PP

         SUN  99 kvknklsksvavCrTdyPGtEamlipteveagssaelavpdedtyykwkgkktsaqYYvNkaGvsvedaCvWgseskpvGNwaplvlGagkdedgktyl 197
                  v+++ls++va+CrTdyPGtE+m+ipt v+ag+s +l+v+d+dtyy+w+g+ktsaqYYvN+aGvsv+d+C+Wg++++ vGNwapl++Gag +  g +yl
  CCD23413.1 288 IVVSELSQDVAICRTDYPGTENMVIPTFVTAGNSLPLTVVDQDTYYSWQGMKTSAQYYVNNAGVSVQDGCIWGDSGSGVGNWAPLNFGAGSTG-GISYL 385
                 ********************************************************************************************9.***** PP

         SUN 198 sifqNptskeklnfnvkieae.egdsvsgkCkyesgklskgggadgCtv 245
                 s+++Np++ + lnfnvki+a+ ++++v+g+C ye+g++s+  g+dgCtv
  CCD23413.1 386 SLIPNPNNGSPLNFNVKIVAAdDQSTVNGECYYENGSFSG--GSDGCTV 432
                 ******************99868899*************5..59***98 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.8   0.00027       2.4     252     363 ..      58     171 ..      21     202 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00027
    Macoilin 252 eleyrekkksakssrsdskkkhehn....esvdsklqekeymenkskskrlsksessgsesellveesvkskssssssssnknskkasagsagssnsss 346
                 ++   +k ++ ++ +++++   +       +  + +++ +++++++ +++ +  ++ g+ ++++ + +++++++s++++ + + ++++a ++ +++s++
  CCD23413.1  58 TVLVDNKGNTVTQANQQTAITTT-VptstLQPVNAIEDVSFKASTIANTPTTIPTAAGEPTTVQEQIQNQEQTTSTTQQIQTT-STEQAVQIPTTTSTA 154
                 33333333333333333322222.12333223355677778888888888777777777777776666666666665554333.333333343333333 PP

    Macoilin 347 kkhsessksvtsssssk 363
                 +   + ++s +ssss++
  CCD23413.1 155 QASTADASSSASSSSNS 171
                 33333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1610  (0.0897987); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 3051.57
//
Query:       CCD23414.1  [L=302]
Description: hypothetical protein NDAI_0B03800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-46  156.8   0.0    6.6e-46  156.2   0.0    1.2  1  adh_short        short chain dehydrogenase
    3.3e-26   92.3   0.0    4.1e-26   92.0   0.0    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    9.2e-07   28.9   0.0    1.4e-06   28.4   0.0    1.2  1  KR               KR domain
    2.8e-05   23.7   0.0    6.9e-05   22.4   0.0    1.6  1  Epimerase        NAD dependent epimerase/dehydratase family
     0.0018   17.4   0.0     0.0029   16.8   0.0    1.3  1  RmlD_sub_bind    RmlD substrate binding domain
     0.0021   17.5   0.1      0.023   14.0   0.1    2.3  1  DUF1776          Fungal family of unknown function (DUF1776)
  ------ inclusion threshold ------
      0.057   13.7   0.0       0.13   12.6   0.0    1.7  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.2   0.0   2.6e-49   6.6e-46       1     188 [.      11     197 ..      11     203 .. 0.97

  Alignments for each domain:
  == domain 1  score: 156.2 bits;  conditional E-value: 2.6e-49
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---SS--SSGGGCS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGitgsgpfsels 97 
                 k+++vtGassGIG++i +elak+++ +++++r+ ++++++++e+ ++   + + ++D+++ ee+ ++ +   ++l  +kld+L+nNAG + + p+ ++s
  CCD23414.1  11 KIAVVTGASSGIGYEITNELAKNNYIIYACARRVDPIQQLVDEFSNA--VIKPHKLDISNPEEITQFKQFLSENLpnEKLDLLYNNAGQSCTFPALDVS 107
                 79*******************************************85..799***********************999********************* PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  98 eeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 ++ +e++++vN++g ++++r++ + ++ + +G+Iv+++S ag  p++ ++ YsA+Kaa+++++r l+ el+p g+rv++ ++G+v++++a 
  CCD23414.1 108 NDVMEQCFKVNVFGHVNMCRELSQFLI-NAKGTIVFTGSLAGITPFPFGSIYSATKAAIHQYARVLHLELKPFGVRVINAVTGAVKSNIAD 197
                 *********************999988.99********************************************************99876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   1.6e-29   4.1e-26       1     182 [.      17     199 ..      17     235 .. 0.91

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 1.6e-29
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE...EE--TTSHHHHHHHHHHHHHHH..SSEEEEEE-----EGCSS-GGGH-H CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev...lecDVtdeeqvealveevvekf..gklDilvnnagiapklkgpfletsr 92 
                   Ga sgIG++i  +la++ + + ++ ++ +    +++l++e++++v    ++D++++e+++++ + + e++  +klD l nnag + +   p+l++s 
    CCD23414.1  17 GASSGIGYEITNELAKNNYIIYACARRVDP---IQQLVDEFSNAVikpHKLDISNPEEITQFKQFLSENLpnEKLDLLYNNAGQSCT--FPALDVSN 108
                   899*******************99999998...99*****99996699**********************999**************..******** PP

                   HHHHHHHHHHTHHHHHHHHHHHH.HCTSCCEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGS CS
  adh_short_C2  93 eefdraldvnlyslfllakaalp.lmkeggsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgi 182
                   + +++ ++vn+ + +++++++ + l++++g iv + s+++   +p  ++y+a+Kaa+++ +r l  el p g+Rv     g++k ++a+  
    CCD23414.1 109 DVMEQCFKVNVFGHVNMCRELSQfLINAKGTIVFTGSLAGITPFPFGSIYSATKAAIHQYARVLHLELKPFGVRVINAVTGAVKSNIADTR 199
                   ***********************999999*********************************************96666788887776554 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   5.3e-10   1.4e-06       4     163 ..      14     172 ..      12     185 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 5.3e-10
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHS..S---EEEE---------TTT- CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkdavealleeikaee..ppikGvihaAgvlrdklleem 100
                 ++tG+  g+G e+++ la++ +  +  ++R+  +d+ + +l++e+++  a ++  ++D+s+++++++  + ++++   +++   ++ Ag + + +  ++
  CCD23414.1  14 VVTGASSGIGYEITNELAKN-NYIIYACARR--VDPIQ-QLVDEFSN--AVIKPHKLDISNPEEITQFKQFLSENLpnEKLDLLYNNAGQSCTFPALDV 106
                 79***************987.4567788888..56655.59998876..99****************9999998888899******************* PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHH CS
          KR 101 taedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaNaflDalaeyr 163
                 +++ +eq+++  v G  n+ + l++   +    +v++ S+ag++  +  + Y+a+ a ++++a+  
  CCD23414.1 107 SNDVMEQCFKVNVFGHVNMCRELSQfliNAKGTIVFTGSLAGITPFPFGSIYSATKAAIHQYARVL 172
                 ******************9999988887778899999********************999999865 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.7e-08   6.9e-05       2     160 ..      14     176 ..      13     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.7e-08
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC....EEEE--TT-HHHHHHH...HH....HHT-SEEEE--S---H....HHHHHSHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl....elveldltdrsalerl...fk....eeqpdavihlAavggv....aassedpa 85 
                 +VtGa+  iG  ++++l++++y + + +r+ +  ++  +e      + ++ld+ ++++++++   ++    +e+ d  ++ A++++     ++s++  +
  CCD23414.1  14 VVTGASSGIGYEITNELAKNNYIIYACARRVDPIQQLVDEFSnaviKPHKLDISNPEEITQFkqfLSenlpNEKLDLLYNNAGQSCTfpalDVSNDVME 112
                 8*****************************7777766555449999**********9555441113322225799********7654222267889999 PP

                 HHHHHHTHHHHHHHHHHHHH..TCT.EEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH CS
   Epimerase  86 dfieknlqgtlnlleaarka..gvk.rllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy 160
                 ++++ n+ g +n++ ++++   ++k  ++f +S       a +     t   p++  s Y+a+K+a++++++ ++ + 
  CCD23414.1 113 QCFKVNVFGHVNMCRELSQFliNAKgTIVFTGS------LAGI-----T---PFPFGSIYSATKAAIHQYARVLHLEL 176
                 9999*************9884444467888888......3333.....5...77889999999999999999887764 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.1e-06    0.0029       4     108 ..      14     145 ..      11     168 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.1e-06
                    EEESTTSHHHHHHHHHCTTTSEEEEEE-TT...................T--TTSHHHHHHHH.......HHH--SEEEE--....----HHHHHH CS
  RmlD_sub_bind   4 lvtGanGqlGseLakqlaeeglevlaltre...................eldltdaeavaell.......keakpdvvvnaA....AytavDkaEs 69 
                    +vtGa+  +G+e++++la++++ ++a+ r+                   +ld++++e+++++         + k d+++n A     + a D   +
     CCD23414.1  14 VVTGASSGIGYEITNELAKNNYIIYACARRvdpiqqlvdefsnavikphKLDISNPEEITQFKqflsenlPNEKLDLLYNNAgqscTFPALDVSND 109
                    79*************************9999**************************99987655555555567789**988454468899***** PP

                    SHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S- CS
  RmlD_sub_bind  70 eeeaayavnaeavealAeaaaavgalLihvStDyVFdGe 108
                      e+ ++vn+ +  +   ++++   +Li      VF G+
     CCD23414.1 110 VMEQCFKVNVFGHVN---MCRELSQFLINAKGTIVFTGS 145
                    **********99876...588899999999999999887 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   9.1e-06     0.023      19     201 ..      25     192 ..      10     273 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.1e-06
     DUF1776  19 sialDLerrGFiVfvtvesaeeeklvesed.redIrplsvdddpssieasleefaqslesphvalpgakphvlrLkgvilvPslsyptgpietiplssw 116
                  i ++L +  +i++ +++  +  +++ +e  ++ I+p ++d    s  +++++f+q l+++   lp+ k         +     +  t p   ++ + +
  CCD23414.1  25 EITNELAKNNYIIYACARRVDPIQQLVDEFsNAVIKPHKLDI---SNPEEITQFKQFLSEN---LPNEKLDL------LYNNAGQSCTFPALDVSNDVM 111
                 68899***************99999888875666*******9...8889999999999997...77776433......444456666667779999999 PP

     DUF1776 117 aselnerllspiltlqallplltsrakqkakiivvnpsissslnlpfhapEalvssalsalfevLkrelrphnidvtqikLGnld 201
                 ++ ++ +++  + +  +l + l +       +iv++ s+      pf ++ + +  a+++ ++vL+ el+p ++ v++   G ++
  CCD23414.1 112 EQCFKVNVFGHVNMCRELSQFLIN----AKGTIVFTGSLAGITPFPFGSIYSATKAAIHQYARVLHLELKPFGVRVINAVTGAVK 192
                 999999999999999999888885....678999*******99***************************999999988888764 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.9e-05      0.13       2      63 ..      14      73 ..      13     119 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.9e-05
                     EEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHH CS
  Sacchrp_dh_NADP  2 liiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavL 63
                     ++ Ga  ++G  ++ +la+++ +   i  + r  +  ++l+++ ++  +++++ld++n+e+++
       CCD23414.1 14 VVTGAsSGIGYEITNELAKNNYI---IYACARRVDPIQQLVDEFSNAVIKPHKLDISNPEEIT 73
                     56788889************988...**********************************943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 2037.75
//
Query:       CCD23415.1  [L=1014]
Description: hypothetical protein NDAI_0B03810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-65  218.2   0.0    1.1e-64  217.4   0.0    1.5  1  Transket_pyr     Transketolase, pyrimidine binding domain
    1.7e-56  191.4   0.0    2.4e-56  190.9   0.0    1.1  1  E1_dh            Dehydrogenase E1 component
    9.4e-51  171.5   0.0    1.6e-50  170.8   0.0    1.4  1  OxoGdeHyase_C    2-oxoglutarate dehydrogenase C-terminal
    4.2e-19   67.8   0.9    4.2e-19   67.8   0.9    1.9  2  2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   0.0   2.4e-68   1.1e-64       2     178 .]     647     859 ..     646     859 .. 0.99

  Alignments for each domain:
  == domain 1  score: 217.4 bits;  conditional E-value: 2.4e-68
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTHHHHTTCHCCHHEGGT................TEGEEE--S-HHHHHHHHHHHHHHCT.TEEEEEEEE CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDvaggtfsvrkgllhdqg................egrvidsgisEqavlgfavGaalagp.llviveaqF 81 
                   +i+w+++ea+a+a+l  e+++v+++g+Dv++gtfs+r+++lhdq+                ++ +++s++sE++v+gf++G++l++p +lv++eaqF
    CCD23415.1 647 GIDWSTGEALAFATLTLEGHNVRVSGEDVERGTFSQRHAVLHDQNsedtyiplkhlsekqaDFSICNSSLSEYGVMGFEYGYSLTSPeYLVMWEAQF 743
                   69*********************************************************************************************** PP

                   HHHHGGGHHGGHHHHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTT...................EEEE--SSHHHHHHHHHHHHH CS
  Transket_pyr  82 gdFangAqiyadqairsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipg...................lkvvrPsdpaetkhllrrair 159
                   gdFan+Aq+++dq+i  ge+k+k+++g+++ lp+g++++Gpeh+s +le+fl+l ++                   ++vv+P++pa+++h++rr+ +
    CCD23415.1 744 GDFANTAQVIIDQFIAGGEQKWKQRSGLILSLPHGYDGQGPEHSSGRLERFLQLANEdpryfpseeklqrqhqdcnFQVVYPTTPANLFHIIRRQQH 840
                   ************************************************************************************************* PP

                   SSS.SEEEEEE-SSEEC.T CS
  Transket_pyr 160 redrkPvvlrlpksllrhk 178
                   r++rkP++l+++k+llrh+
    CCD23415.1 841 RQFRKPLALFFSKQLLRHP 859
                   *****************85 PP

>> E1_dh  Dehydrogenase E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   0.0   5.4e-60   2.4e-56       4     294 ..     255     573 ..     252     578 .. 0.88

  Alignments for each domain:
  == domain 1  score: 190.9 bits;  conditional E-value: 5.4e-60
                 HHHHHHHHHHHHHHHTTSS-S-----TT-HHHHHHHHHTS-TT..SEEEES.S--HHHHHHTT--..HHHHHHHHTT-T.....TTSSGTT-..-E..B CS
       E1_dh   4 vllrrvedaldalykrkkrigfyhlsagqealkvgiaaaleke..Dliite.YReagvllargls..leeilaeltgkv.....kgkggsrh.elmyae 91 
                    + +e +l+ ++ ++kr+g++ l+a  + +k++i+ ++e +  D+++ + +R++ ++l ++++   e+i++e+tg       +g+g++++  +m  +
  CCD23415.1 255 TWATSFETFLSTKFPNEKRFGLEGLEAVVPGIKTLIDRSVEMGveDVVLGMaHRGRLNVLSNVVRkpNESIFSEFTGTStrddiEGSGDVKYhLGMNYQ 353
                 56788999*******************************9998879999777************98899*********99****888888887665444 PP

                 TT..........BEEE-SSTTTHHHHHHHHHHHHH......HHTS---EEEEEEGGG.TT-HHHHHHHHHHHHTT--E...EEEEEEESEETTEEHHHH CS
       E1_dh  92 ke......s..rilggngivgaqvplvaGialaak......iegkkevailliGDgA.anqGdvyealnlaalwklpv...ifvveNNkygisTeaeka 172
                 +       +  +++   + + aq p+v G ++a         +++k++ +ll+GD+A a+qG vye++ +  l+++ +   i+++ NN++g++T+++ a
  CCD23415.1 354 RPttsgkyVnlSLVANPSHLEAQDPVVLGRTRALLhakgdlENKTKALGVLLHGDAAfAGQGVVYETMGFLTLPEYSTggtIHIITNNQIGFTTDPRFA 452
                 43000001211233333334444555555555544899**99999********************************99******************** PP

                 -S---GGG..TTTTS-EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSHSHSSSHHHHHHHHHHHH-HHHHHHHHHHHTTSS-HH CS
       E1_dh 173 saskeladrargvgipglrVdgnDplavyeAvkfAaeraregkgpllielvtYRyggHsesDdpstyrtreeveevrkkkdpiqrlkelLvkkgvvsee 271
                 +++++++d a++  +p+++ ++nD++av      Aae++++++ +++i++v++R +gH+e D ps+++ + +++ + k+k +i  + ++L ++g  +++
  CCD23415.1 453 RSTPYPSDLAKAIDAPIFHCNANDIEAVTFIFNLAAEWRNTFHTDAIIDVVGWRKHGHNETDQPSFTQ-PLMYKRIAKQKSVIDVYTAKLLNEGSFTQK 550
                 ********************************************************************.****************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHS CS
       E1_dh 272 elkeiekevrkeveeavkkaesk 294
                   +e +k v    eea++k++++
  CCD23415.1 551 DIDEHKKWVWSLFEEAFEKSKDY 573
                 ********************997 PP

>> OxoGdeHyase_C  2-oxoglutarate dehydrogenase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   0.0   3.5e-54   1.6e-50       1     152 []     862    1012 ..     862    1012 .. 0.97

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 3.5e-54
  OxoGdeHyase_C    1 rSsleelaegtsFqrvledeeeea.lkepekvkrvvlcsGkvyydLlkerekkekekdvaivriEqlyPfpfeelkeelekYpnakelvWvQeE 93  
                     rS+lee++eg  Fq+++ed e+ + + ++e++kr+vl sG+vy++L+k+re+ ++ k++a+++iE+l+Pfpf++l++++++Ypn++e+vW+QeE
     CCD23415.1  862 RSNLEEFTEG-GFQWIIEDVEHGKaIGTKEETKRLVLLSGQVYTALHKKRETLGD-KTTALMKIEELHPFPFAQLRDAINSYPNLEEIVWCQEE 953 
                     69********.*********997678889**********************9865.9************************************* PP

  OxoGdeHyase_C   94 pkNqGawsfveprletvlkekkkkkkklryvgreasaspAtGskkvhkkeqealleeaf 152 
                     p N+G+wsfv+prl+t+l+e++ k+ ++ry+gr++s ++A+Gsk+ h++e+ea+l+++f
     CCD23415.1  954 PLNMGSWSFVSPRLKTTLNETTYKDFTVRYCGRNPSGAVAAGSKALHAAEEEAFLKDVF 1012
                     ********************999*********************************987 PP

>> 2-oxogl_dehyd_N  2-oxoglutarate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.9   9.4e-23   4.2e-19       1      39 [.      43      81 ..      43      82 .. 0.96
   2 ?   -2.6   0.1      0.99   4.4e+03      28      35 ..     488     495 ..     487     496 .. 0.85

  Alignments for each domain:
  == domain 1  score: 67.8 bits;  conditional E-value: 9.4e-23
  2-oxogl_dehyd_N  1 dsfLsgtnaaYiEelYeayleDPsSVdesWrayFknled 39
                     d+fLs++n++Yi+e+Y a+++DP+SV+ sW+ayFkn+++
       CCD23415.1 43 DTFLSTSNSSYIDEMYLAWQKDPTSVHVSWDAYFKNMGN 81
                     68***********************************85 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.99
  2-oxogl_dehyd_N  28 esWrayFk 35 
                      ++Wr+ F+
       CCD23415.1 488 AEWRNTFH 495
                      69****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 7137.96
//
Query:       CCD23416.1  [L=543]
Description: hypothetical protein NDAI_0B03820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-09   37.2   0.1    6.5e-09   36.1   0.1    1.6  1  MULE             MULE transposase domain
     0.0015   17.4   0.1     0.0035   16.2   0.1    1.5  1  Transposase_mut  Transposase, Mutator family
  ------ inclusion threshold ------
      0.013   15.4   0.1      0.048   13.6   0.1    1.8  2  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site


Domain annotation for each model (and alignments):
>> MULE  MULE transposase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.1   1.1e-12   6.5e-09       2      96 .]     319     412 ..     318     412 .. 0.92

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1.1e-12
        MULE   2 vvlDgTyktnkyklplltvvgvddngqlvplafalve.seneesyewllqelleevsgqrspkviitDkekallnaleevfpeakhrlClfHiakn 96 
                 +++DgT++ ++++ +l+++vg++   +++pla+ +++ +e+++  +  +q+l+++v+ ++s   +++D+ k+l +a++e++ + + + C+ H+ kn
  CCD23416.1 319 FLIDGTFLRGHFR-TLINIVGMTTDYRSIPLAHLFTTsHETTKACRITIQSLKRNVDLDWSAANFMCDQGKGLESAIREEY-GKEELTCVTHLSKN 412
                 689******9987.79999*****99*****9999752699999*************************************.88999******997 PP

>> Transposase_mut  Transposase, Mutator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   5.9e-07    0.0035     232     348 ..     383     496 ..     377     509 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 5.9e-07
  Transposase_mut 232 vsDahkGLvkaisavfpeaavQrCrvHllrnllakvpkkkadkvaealksiykaedaeearealeefleklgk.kypkvaelldeaaedvlafl 324
                      ++D+ kGL++ai++ + +    +C +Hl++nl+++++    + +++a +++    d +  +e+++e+++k+ + k     +++++ +e+   f 
       CCD23416.1 383 MCDQGKGLESAIREEYGKE-ELTCVTHLSKNLIRNAKGRVIEAFQAATHTL----DPQVYEESINELIKKFPEsKRNSGNSTFKKLTENPRSFS 471
                      69*************9775.569**********998877777777666665....444455555555555554444455556666666777888 PP

  Transposase_mut 325 afpeqi.rrkikstNllErLNkeir 348
                      +++++  + +i +tN++E+  + i+
       CCD23416.1 472 RLKRDCpHWEIFTTNPVEQFHSIIK 496
                      8887753558999999998876665 PP

>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.44   2.6e+03     134     206 ..     168     237 ..     152     251 .. 0.52
   2 ?   13.6   0.1   8.1e-06     0.048      30     105 ..     384     460 ..     374     481 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.44
  UBA_e1_thiolCys 134 nLraqvygikgerdeeaiakllskvkvpefkpkekvkiavsdeeakeeeeeeedeeel.eelaeeleklakkes 206
                       L+  +++i   ++ ++ +++  +++ p+++    + i+v++e+++ +e e++d e + e l eele++ k+++
       CCD23416.1 168 VLYGDLISIGMFSTVDEEKRVFGNIDYPNVEG---MIIRVEEEDKDIDE-ERQDGEVVdEGLSEELEDVLKDNN 237
                      55555555555556666666677777666554...33443333332222.223323331334555555444443 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 8.1e-06
  UBA_e1_thiolCys  30 lkdkekfleelekekeeekletlekvlkllvkerpktfedCvkwArekfe.klFnnkikqLlynfPkdsktsdGapF 105
                      +++ + + +++++e ++e+l+ + +++k l+++ +  + ++ + A ++   + ++++i++L+++fP+ +++s  + F
       CCD23416.1 384 CDQGKGLESAIREEYGKEELTCVTHLSKNLIRNAKGRVIEAFQAATHTLDpQVYEESINELIKKFPESKRNSGNSTF 460
                      4555666777888888999999************************9997478**************9999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4119.63
//
Query:       CCD23417.1  [L=191]
Description: hypothetical protein NDAI_0B03830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-29  101.9  12.3      4e-15   56.2   4.8    2.1  2  Ribosomal_L6  Ribosomal protein L6
  ------ inclusion threshold ------
       0.14   12.2   0.1        1.8    8.6   0.0    2.5  2  CPT_N         Carnitine O-palmitoyltransferase N-terminus


Domain annotation for each model (and alignments):
>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   4.8   4.5e-19     4e-15       1      76 []      12      85 ..      12      85 .. 0.90
   2 !   50.6   0.8   2.5e-17   2.3e-13       1      76 []      97     178 ..      97     178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 4.5e-19
                  CSTTEEEEEETTTEEEEEESSEEEEEE-CTT.SEEEEEECSTEEEEEECSESCHHHHHHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6  1 iPvgvrvsikggqlvlvlGpkgeltreipeg.vtvevkvegnkvtvivvsgidkekvAligtvrslinnmikGVteg 76
                  iP+gv+v+ik+ ++v+v+Gp+g lt ++++  vt+  k   + ++v+v +g++k+ +  ++tv+sl++nmi GVt+g
    CCD23417.1 12 IPEGVTVNIKS-RIVKVTGPRGVLTKNLKHIdVTFN-KISKDLIKVTVHNGDRKHVA-ALRTVKSLVDNMIIGVTKG 85
                  8*********6.******************855555.345668999999*******9.*****************98 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 2.5e-17
                   CSTTEEEEEET....TTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHH....HHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6   1 iPvgvrvsikg....gqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekv....AligtvrslinnmikGVteg 76 
                   +P++v+   k+     +++++lG k+ +t++++egv++e +   n++++iv+sg++ e+v    A+i++++++ n++i+++ +g
    CCD23417.1  97 FPINVNTIEKDgakfIEIRNFLGDKKVRTVPVREGVDIEYS--TNVKDEIVLSGNSVENVsqnaADIQQICRVRNKDIRKFLDG 178
                   6888765555559999***********************55..9*************************************998 PP

>> CPT_N  Carnitine O-palmitoyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.091   8.2e+02      15      27 ..      12      24 ..       8      27 .. 0.81
   2 ?    8.6   0.0    0.0002       1.8      17      35 ..     130     148 ..     128     151 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.091
       CPT_N 15 tpdGidvqlsqea 27
                 p+G+ v++ + +
  CCD23417.1 12 IPEGVTVNIKSRI 24
                59*****998766 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0002
       CPT_N  17 dGidvqlsqeaLkeiylsg 35 
                 +G+d+++s+++  ei+lsg
  CCD23417.1 130 EGVDIEYSTNVKDEIVLSG 148
                 9****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       715  (0.0398795); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1622.98
//
Query:       CCD23418.1  [L=1363]
Description: hypothetical protein NDAI_0B03840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-75  253.0   0.5    7.3e-75  251.9   0.5    1.5  1  SNF2_N       SNF2 family N-terminal domain
    1.4e-22   80.1   0.2      2e-19   70.0   0.0    3.7  3  Helicase_C   Helicase conserved C-terminal domain
    2.5e-18   65.9   0.3    9.7e-18   64.0   0.3    2.1  1  Bromodomain  Bromodomain
      1e-12   48.2   5.1      1e-12   48.2   5.1    3.0  3  HSA          HSA
    1.4e-12   48.0   0.2    1.1e-11   45.0   0.0    2.7  3  ResIII       Type III restriction enzyme, res subunit
    7.9e-09   36.0   0.0    7.9e-09   36.0   0.0    3.8  4  SnAC         Snf2-ATP coupling, chromatin remodelling complex


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.9   0.5   2.4e-78   7.3e-75      49     349 ..     469     755 ..     459     756 .. 0.89

  Alignments for each domain:
  == domain 1  score: 251.9 bits;  conditional E-value: 2.4e-78
                 HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------.- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x RF
      SNF2_N  49 aeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapk.l 146
                 +++++++ +GiLaDemGLGKT+q+++li+   +  e++ke+       gp+L++vP s++++W+ e+e++++s ++ ++ ++ ++     ++ ++++  
  CCD23418.1 469 VSLYNNHLNGILADEMGLGKTIQSISLIT---YLFESKKEP-------GPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQ-----RRSLQHEiR 552
                 6789999**********************...999999999.......**************************99888888864.....334445415 PP

                 -----EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH.---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 147 ladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavsk.LstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkl 244
                   ++dv++ttY+++ +++        l++ +w  +++DEgh++kn +sk++ ++s+ ++t+nr+iltGTP+qn+l +l++Ll+f+ +++f++ +tf+++
  CCD23418.1 553 NGNFDVLLTTYEYIIKDK------ALLSKHDWAHMIIDEGHRMKNAQSKLSYTISHyYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDW 645
                 6799***********999......9*******************************899**************************************** PP

                 THHHHH............HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH CS
                 xxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 245 lqrpie............aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskske 331
                 +++p++            +++   ++rL+++l++++lrr kk+vek+lP+k+e++i +kls  ++++Y++   +l k+ ++++    e a+k +    +
  CCD23418.1 646 FNTPFAntgtqeklelteEETLLVIRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYEQ---ML-KHNALFVGAGTEGATKTGI---K 737
                 **************99877777889********************************************3...33.3333334444444555444...3 PP

                 -HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxx RF
      SNF2_N 332 kilelllelrqacnhpql 349
                  + + +++lr++cnhp +
  CCD23418.1 738 GLNNKIMQLRKICNHPFV 755
                 488999*********976 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3       1.7   5.1e+03      33      63 ..     336     362 ..     302     371 .. 0.64
   2 !    5.6   0.0    0.0065        19       5      73 ..     495     562 ..     491     567 .. 0.72
   3 !   70.0   0.0   6.6e-23     2e-19       2     111 .]     779     892 ..     778     892 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.7
                 HHHHHHTTSTEEEESTTSTHHHHHHHHHHHH CS
  Helicase_C  33 klllekkgikvavlhgelpqnereeileqfn 63 
                 +++    g  +++ h +++++e+++i +  +
  CCD23418.1 336 SVF----GKFCTTAHNQIEKDEQRRIERTAK 362
                 333....666888899999999999887765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0065
                 HHHHHHHHTTTTSEEEEEESSHH....HHHHHHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C   5 allellkleeeggkilifvntid....rlekvklllekk..gikvavlhgelpqnereeileqfnkgesdvLiat 73 
                  +++l+++++e g  l++v+  +    +l     + ek   +++++++ g  + n+r+   ++ ++g++dvL++t
  CCD23418.1 495 LITYLFESKKEPGPFLVIVPLSTitnwTL----EF-EKWapSLNTIIYKG--TPNQRRSLQHEIRNGNFDVLLTT 562
                 55666677777787777777777323222....22.22245788888888..99*******************99 PP

  == domain 3  score: 70.0 bits;  conditional E-value: 6.6e-23
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn..kgesd.vLiatdvaerGidipkvnlVinfdlprn 96 
                 k+e l + l k++++g+++l+f + ++ ++ ++ +l+ k++k+ +l+g++++++r  +l++fn  + e+  +L++t++++ G++++ +++Vi+fd ++n
  CCD23418.1 779 KFELLDRVLpKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKADDRTGMLKEFNapNSEYFcFLLSTRAGGLGLNLQTADTVIIFDTDWN 877
                 667778888999***************9988888888999***********************88778888**************************** PP

                 HHHHHHHHTTSSSTT CS
  Helicase_C  97 vtsyiqriGRtgRag 111
                 +++  q+ +R++R+g
  CCD23418.1 878 PHQDLQAQDRAHRIG 892
                 *************97 PP

>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.3   3.3e-21   9.7e-18       2      83 ..    1264    1345 ..    1263    1346 .. 0.96

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 3.3e-21
                   HHHHHHBHTTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain    2 ekilsellehklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyelae 83  
                   + i ++   h  +e+F++ ++++ +pdyy+ i+kP+ L +I k ++++ Y+s++++++dl+ +++Nar yn+egs +y +a+
   CCD23418.1 1264 RSITDNADGHAVTEVFEKLPSRKLYPDYYTLIQKPIALDKIIKDCKKGSYNSIEEVKEDLQTMYQNARFYNEEGSWVYNDAD 1345
                   67888999999********************************************************************996 PP

>> HSA  HSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   5.1   3.4e-16     1e-12       3      71 .]     301     369 ..     299     369 .. 0.95
   2 ?   -4.2   0.1         6   1.8e+04      28      49 ..     584     605 ..     580     608 .. 0.76
   3 ?   -2.0   1.6       1.6   4.8e+03      23      62 ..    1072    1084 ..    1058    1089 .. 0.50

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 3.4e-16
                 XXXXXXX--HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--XXXXXXXXXXXXXXXXXXX.. CS
         HSA   3 eperrqkthhdylLeeilwhakdfkeerkskrakakklaravakyhnniekeeqkriereekerlkalk 71 
                 e+ ++q+  h + +  i+ + k+ +e+++ +r++++ +++ +++ hn+iek+eq+rier++k+rl+alk
  CCD23418.1 301 EKRKKQRNLHLKKIYNIIDFVKETQENKNPRRDRCSVFGKFCTTAHNQIEKDEQRRIERTAKQRLAALK 369
                 5667799999999******************************************************97 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 6
                 HHHHHHHHHHHHHHHHHHHHH- CS
         HSA  28 eerkskrakakklaravakyhn 49 
                 +e ++ ++  +kl+  ++ y +
  CCD23418.1 584 DEGHRMKNAQSKLSYTISHYYR 605
                 5667777888999999999876 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.6
                  HHHHHHHHHHHHHHHHHHHHHHHHHH--XXXXXXXXXXXX CS
         HSA   23 akdfkeerkskrakakklaravakyhnniekeeqkriere 62  
                  +++ ++                            +r+++e
  CCD23418.1 1072 RREARD---------------------------RRRQKKE 1084
                  222222...........................2222222 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.7   4.9e+03      85     126 ..     338     377 ..     294     398 .. 0.49
   2 !   45.0   0.0   3.7e-15   1.1e-11       4     169 ..     457     616 ..     436     618 .. 0.79
   3 ?   -3.4   0.0       2.9   8.5e+03      64     100 ..     710     748 ..     707     769 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.7
                 GEEEESSS-B--.......-SEEEEEHHHHHHTH........ CS
      ResIII  85 igkkvsgdkkkakekdstnkkilvttiqsldadseeeeeese 126
                  gk+ +  ++++  +++++++i  t  q+l a ++++ee+  
  CCD23418.1 338 FGKFCTTAHNQI--EKDEQRRIERTAKQRLAALKSNDEEAYL 377
                 333333333333..3455555555555555555555544444 PP

  == domain 2  score: 45.0 bits;  conditional E-value: 3.7e-15
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseaykeigkkvsgdkkka....k 97 
                 l+eyQ + +e +++ +  +++ +g+++ + G GKT+ +++li +l++++ke   fl++vp  ++++ +  ef+k++++ ++    +++g  +++    +
  CCD23418.1 457 LKEYQLRGLEWMVSLY--NNHLNGILADEMGLGKTIQSISLITYLFESKKEPgPFLVIVPLSTITN-WTLEFEKWAPSLNTI---IYKGTPNQRrslqH 549
                 4555655555555333..8999**************************99889*******999987.6668******98644...33333333334567 PP

                 ......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.TTHH.HHHT---SEEEEEESS- CS
      ResIII  98 ekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.swre.ilekfkeavllglTATp 169
                 e+++ n ++l+tt++ + +d+         l+++    +iiDE Hr++ ++ +    i  +++   +l lT+Tp
  CCD23418.1 550 EIRNGNFDVLLTTYEYIIKDK-------ALLSKHDWAHMIIDEGHRMKNAQsKLSYtISHYYRTRNRLILTGTP 616
                 999******************.......777888888**********99733443337999999999******9 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.9
                 HHHHHHHHHHGGGGTGG.....GEEEESSS-B--..... CS
      ResIII  64 kslleqtleefkkflseayke.igkkvsgdkkka.kekd 100
                 ++l+eq+l++ + f    ++  +++ ++g ++k+ + ++
  CCD23418.1 710 QQLYEQMLKHNALFVGAGTEGaTKTGIKGLNNKImQLRK 748
                 689999999988888887665555556666666644444 PP

>> SnAC  Snf2-ATP coupling, chromatin remodelling complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.2   6.5e+03      21      39 ..     411     429 ..     396     446 .. 0.61
   2 !   36.0   0.0   2.7e-12   7.9e-09      10      77 .]     994    1055 ..     974    1055 .. 0.77
   3 ?   -5.5   2.0         6   1.8e+04      50      61 ..    1069    1081 ..    1059    1087 .. 0.45
   4 ?   -3.3   0.2         5   1.5e+04      39      58 ..    1219    1238 ..    1192    1243 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.2
                 ---SS-------------- CS
        SnAC  21 lpsRLleeseLPefyekdg 39 
                   ++Ll+ +e++++  +d 
  CCD23418.1 411 NEAKLLNGEEIKPLTDEDR 429
                 4567777777777776652 PP

  == domain 2  score: 36.0 bits;  conditional E-value: 2.7e-12
                  ..........----SS-------------------HHHHHHHHHHHH-XXXXXXXXXXXXXXXXXXXX CS
        SnAC   10 qsgedgserkplpsRLleeseLPefyekdgveekkeekeeldeqlygrgkRaRkevsYeDqlTEeefl 77  
                  ++ +++   k +p+RL++ seLP++++++ +ee+ ++    + +  gr  R++k v Y+D+lTEe+fl
  CCD23418.1  994 KKIAKANGLKTVPPRLIQVSELPAIFREN-IEEHFKD----EPVAIGR-IREKKRVYYDDGLTEEQFL 1055
                  233344445899****************7.6666664....3456666.6*****************7 PP

  == domain 3  score: -5.5 bits;  conditional E-value: 6
                  HHHHHHH-.XXXX CS
        SnAC   50 ldeqlygr.gkRa 61  
                   +++ ++r  +R+
  CCD23418.1 1069 IQKRREARdRRRQ 1081
                  3334444422333 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 5
                  ------HHHHHHHHHHHH-X CS
        SnAC   39 gveekkeekeeldeqlygrg 58  
                  + ee k++ e+++ +  grg
  CCD23418.1 1219 EPEETKQDVEDAKPKPKGRG 1238
                  34555566666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1838  (0.102515); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.43
# Mc/sec: 9435.78
//
Query:       CCD23419.1  [L=930]
Description: hypothetical protein NDAI_0B03850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-40  138.7   0.5      4e-40  137.5   0.5    1.6  1  Fungal_trans  Fungal specific transcription factor domain
    1.4e-11   44.3  11.6    2.4e-11   43.5  11.6    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   0.5   4.4e-44     4e-40       3     266 ..     270     536 ..     268     537 .. 0.93

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 4.4e-44
  Fungal_trans   3 rffsnfhpqfpilhkpsflpkt......ssenssksayaspllllailalGalfsesetkesnssltses..............qefiafplraeil 79 
                     ++++  ++ i+h+psf ++         +n s ++ ++  l ++++a+Galfs+s+++e+ + + ++               +e ++++++a++l
    CCD23419.1 270 KTWEHCCVLLRIYHRPSFIKQVdelyetDPHNYSAKQMQFLPLCYSVIAVGALFSKSIANEELNHTPTDLasdtnpstdtkflqDEGYKYFIAARKL 366
                   5699********************97666666666666666666******************99999999*************************** PP

  Fungal_trans  80 ihedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppll 176
                   i  d +s +s l ++q+ l++ +++++s + + ++ ++gva+r a + gLhr    ++       ++e +e+r+Rl+++++ lD+++  +lG p  +
    CCD23419.1 367 I--DITSARS-LDSIQAILMMFIFLQCSARLSTCYSYIGVAMRSALREGLHRQVGPNSGF----NPIE-IEMRKRLFYTIYKLDIYVNAMLGLPRSI 455
                   *..8888888.***********************************************74....7777.**************************99 PP

  Fungal_trans 177 ddsqinlpLPcddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnWr 266
                   ++++ ++ LP + +d++++++  + ++++       +s  ia+ + +L  il  i+g+l+ i+k+    + +      + +le +l nW 
    CCD23419.1 456 SANDFDQTLPLELSDENITEQGYFPENQN----GVLSSTGIANEHTKLLMILDAIVGELYPIKKTNTFISHE-----TIATLEQKLRNWL 536
                   *****************************....66*****************************98877777.....8999999999996 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5  11.6   2.7e-15   2.4e-11       1      40 []      37      74 ..      37      74 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 2.7e-15
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCEE CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskrs 40
                +aCd+CrkkKvKCd+++P C +C  +++eCt y++++krs
  CCD23419.1 37 RACDECRKKKVKCDGQQP-CIHCTVYSYECT-YNQPTKRS 74
                69****************.************.99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (930 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 6143.99
//
Query:       CCD23420.1  [L=475]
Description: hypothetical protein NDAI_0B03860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-27   95.3   1.4    2.2e-27   95.1   0.2    1.8  2  Forkhead        Forkhead domain
    5.6e-07   29.8   0.0    1.4e-06   28.5   0.0    1.8  1  FHA             FHA domain
  ------ inclusion threshold ------
      0.028   14.8   0.0       0.07   13.5   0.0    1.7  1  Linker_histone  linker histone H1 and H5 family


Domain annotation for each model (and alignments):
>> Forkhead  Forkhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1         2   1.2e+04      14      33 ..      12      31 ..      10      34 .. 0.66
   2 !   95.1   0.2   3.7e-31   2.2e-27       5      86 ..     310     391 ..     306     392 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
                HHHT-TTT-B-HHHHHHHHH CS
    Forkhead 14 AiksspekkltLseIyefie 33
                 ik+++++k  +++I+++++
  CCD23420.1 12 KIKETKQQKNFIQSITSVLT 31
                56777777777777776665 PP

  == domain 2  score: 95.1 bits;  conditional E-value: 3.7e-31
                 --HHHHHHHHHHT-TTT-B-HHHHHHHHHCC-HHHHCC.-CCHHHHHHHHHHHHC--EEETT.-T.TSS--EEE--TTHHHHH CS
    Forkhead   5 ysYaaLIaqAiksspekkltLseIyefieenfpyyrtaakkgWqnSirhnLslnkcFekvpreee.egkgslwtidpeseekf 86 
                  s+aa+Ia+Ai+s++e+ +tLs+Iy +i++n+p y  + ++gW+n +rhnLsln +Fekvpr+ + +gkg++w+i ++++ +f
  CCD23420.1 310 TSWAAMIAEAILSKEEGTITLSDIYVYITDNYPLYILK-SAGWKNAVRHNLSLNAAFEKVPRRANeTGKGMYWRIAEAYKTNF 391
                 799**********************************5.9*********************8666369*********999876 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   2.4e-10   1.4e-06       2      69 .]      74     157 ..      73     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2.4e-10
                 EEESS.....TTSSEETT.........STTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEEST...TSEEEE-TTEEEEET CS
         FHA   2 tiGRs.....sdcdivld.........dpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigk...gepveLksgdvielG 69 
                 t+GR+     sd++i             +++SrkHa+i+++ +s  + l  +g +nG  v+ +r++     +p+ L+sg+ +++G
  CCD23420.1  74 TLGRNtdsiqSDSSIHNIggididlgpTKVVSRKHATIRYNMESMAWQLFVMG-RNGAKVDCVRVPVgpdAPPTTLHSGSLLDVG 157
                 789997776644444422455565656699**********************9.*******999888778999******999887 PP

>> Linker_histone  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.2e-05      0.07       2      38 ..     310     347 ..     309     368 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.2e-05
  Linker_histone   2 psykdMikeAIkalkerkGsSrqaIkkyikakykvv..d 38 
                     +s++ Mi eAI + ke   +++  I  yi+++y++   +
      CCD23420.1 310 TSWAAMIAEAILS-KEEGTITLSDIYVYITDNYPLYilK 347
                     6899********9.88899***************86552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3564.29
//
Query:       CCD23421.1  [L=217]
Description: hypothetical protein NDAI_0B03870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-72  241.4   4.0    7.5e-72  241.2   4.0    1.0  1  CSM2      Shu complex component Csm2, DNA-binding


Domain annotation for each model (and alignments):
>> CSM2  Shu complex component Csm2, DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.2   4.0   4.2e-76   7.5e-72       1     200 []       9     211 ..       9     211 .. 0.94

  Alignments for each domain:
  == domain 1  score: 241.2 bits;  conditional E-value: 4.2e-76
        CSM2   1 ltiwvspkkedlakfikkal...skeesekqlyfidatnsFPisqfqklvplk..eenkkiYeniriltcLdLeeLssivnklvqlislnkikkqkkks 94 
                 +t+w+s++ ++l+++++++l   +k+++ +qlyfidatnsFP++qfq+l+p++  +enk+iY+niri+tcL+L eL++++nk++q+i+lnkik+qk+++
  CCD23421.1   9 ITAWISSTGSHLSQYMSSHLrptEKSNEVRQLYFIDATNSFPLQQFQNLIPYNgeDENKRIYDNIRIITCLELGELAMVLNKIIQSIQLNKIKRQKNTT 107
                 79********************99***************************99889******************************************9 PP

        CSM2  95 nkkkessn..lkilvvinGlevmfrnsqlkssqeeaHlllrdilLrlRvlaNeeeeelslktlllfpkeelkkllskkeekakkqnKrlkskankgnsl 191
                 ++++++++  l+il+v+nGle+mfrn+++k++ e +H++lr++lL+lR+l+Ne ++ ++l++l+lfp ee+k+l +k+ ++ k+++ r +   n+g+s+
  CCD23421.1 108 TQSEKPKEgnLNILIVVNGLETMFRNTRFKENVEVTHSVLRMALLKLRILSNE-RNGYHLRSLVLFPLEEMKNLSTKQLKRLKSSSNRGQ---NDGSSV 202
                 999998877799*****************************************.*******************99997777555555554...66**** PP

        CSM2 192 geYvvkfYa 200
                 g+Yv+k+Y+
  CCD23421.1 203 GDYVCKYYV 211
                 ********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1804.21
//
Query:       CCD23422.1  [L=200]
Description: hypothetical protein NDAI_0B03880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-11   44.3   0.1    1.7e-09   38.0   0.1    2.4  1  Ribosomal_L13  Ribosomal protein L13


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.1   9.6e-14   1.7e-09       4     123 ..       9     117 ..       7     119 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 9.6e-14
                    EEEETTSBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SSTTSEEEEEHHHHHCCSHHHHHHHHHHCCS-SS CS
  Ribosomal_L13   4 viDAegqvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgypgglkevtakellekkpeeilekaVkgmLpkn 99 
                    v+D +g+ lgrlas +ak            ++  G  vvv+ ae ++++g+  ++k  y+   +     + t   ++ + p++i+ kaV+gm  ++
     CCD23422.1   9 VVDGKGHLLGRLASIVAK------------QILNGQKVVVVRAEALNISGEFFRNKLKYHDYLRKATRFNKTRGPFHFRAPSRIFYKAVRGMVSHK 92 
                    677777777777777775............4557889****************9999999988888888888899*******************87 PP

                    H.HHHHHGCTEEEESSSTTSGGGGS CS
  Ribosomal_L13 100 k.lgrrrlkrLkvyageehpheaqk 123
                    +  g++ l+rLkv++g   p++++k
     CCD23422.1  93 TaRGKAALERLKVFEGIPPPYDKKK 117
                    72567777********999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1664.89
//
Query:       CCD23423.1  [L=339]
Description: hypothetical protein NDAI_0B03890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-62  207.2   1.3    7.2e-24   83.5   0.1    3.2  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   5.2e-19   9.4e-15       4      95 ..      11     113 ..       9     115 .. 0.78
   2 !   83.5   0.1     4e-28   7.2e-24       9      94 ..     134     217 ..     127     220 .. 0.93
   3 !   66.9   0.1     6e-23   1.1e-18       6      93 ..     240     339 .]     235     339 .] 0.87

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 5.2e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS............HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa............ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                 s+++e+l+G++ag+++tl+++Pld++K+r+q+ +++++  ++++            i +   k + e+ ++  yrGl +nl+++++a++l+f+ly+  k
  CCD23423.1  11 SLQREILCGLTAGSLTTLIVHPLDLLKVRVQLLASNKTIHNKGYlfiikdlihtakIHHNRNK-FWENLIKESYRGLPINLIGNTVAWGLYFGLYNHSK 108
                 67899***************************9999887665545555554444322222222.23556666*************************** PP

                 HHHCT CS
   Mito_carr  91 rlllk 95 
                  ++++
  CCD23423.1 109 SYIFD 113
                 99976 PP

  == domain 2  score: 83.5 bits;  conditional E-value: 4e-28
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   9 llaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 l++G+++g+++tl+t+Pl+v+Ktr+++ +k++++s+ + i++ +k+i+keeG r+l++Gl+p+l++v+ + al+f++y+ lk  ++
  CCD23423.1 134 LVSGLFSGVMTTLLTNPLWVIKTRIMSTSKTNSHSYTS-IMNGFKSIMKEEGPRALWKGLVPSLFGVS-QGALYFMVYDNLKLKFN 217
                 799****************************9997765.****************************9.************98886 PP

  == domain 3  score: 66.9 bits;  conditional E-value: 6e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS............HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaa............ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                 +k +++ ++++++++++++P+ ++K  lq+ k+ ++++++++            +l   k+iyk++G++gly+Gll+nl+r +p++ ++f +ye lk +
  CCD23423.1 240 YKIIFITSISKMISVSAVYPFQLLKANLQIIKSLHNTNNNRNsstvttkvhnerFLTLTKQIYKDNGFKGLYKGLLANLIRAVPSTCITFCIYENLKAF 338
                 56677889**********************666666555555667788888899******************************************987 PP

                 H CS
   Mito_carr  93 l 93 
                 l
  CCD23423.1 339 L 339
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1273  (0.0710023); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 2867.49
//
Query:       CCD23424.1  [L=741]
Description: hypothetical protein NDAI_0B03900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1215  (0.0677673); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.38
# Mc/sec: 5924.04
//
Query:       CCD23425.1  [L=402]
Description: hypothetical protein NDAI_0B03910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.015   15.1   3.1       0.58    9.9   0.2    2.8  2  Lectin_N        Hepatic lectin, N-terminal domain
      0.064   13.9   6.9         13    6.5   0.9    4.1  4  DUF883          Bacterial protein of unknown function (DUF883
       0.12   12.3   9.0       0.17   11.7   5.4    2.7  2  Apolipoprotein  Apolipoprotein A1/A4/E domain
       0.43   10.5   6.7        9.3    6.2   2.5    3.8  2  YfdX            YfdX protein
          2    7.9  17.9        1.8    8.1   7.3    2.3  2  Exonuc_VII_L    Exonuclease VII, large subunit
        2.5    8.3   7.5       0.56   10.4   0.4    2.9  2  DMPK_coil       DMPK coiled coil domain like
        9.9    6.9  10.6        5.1    7.8   4.0    3.5  4  DUF4398         Domain of unknown function (DUF4398)


Domain annotation for each model (and alignments):
>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   0.00023      0.58      52      86 ..      84     118 ..      78     141 .. 0.73
   2 ?    4.6   0.2      0.01        26      54      95 ..     279     320 ..     271     338 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00023
    Lectin_N  52 qLqreLetLketfsnfssstlaeiqalssqggsls 86 
                  +q +L++Lk+tf n ss+++   q+ + +++  +
  CCD23425.1  84 GIQDDLSALKTTFWNPSSQHMETEQERQIRDDLQN 118
                 589*************9998766555555444333 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.01
    Lectin_N  54 qreLetLketfsnfssstlaeiqalssqggslsekvtsleak 95 
                 + e e +k +fsn++++ + +i + + + +++++kv+  + k
  CCD23425.1 279 KDEYEDIKWQFSNSTEKLNGKIDEATQKLNEAQRKVNETKQK 320
                 457888999*************99999999999888876665 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.31     8e+02      41      69 ..     110     138 ..      79     145 .. 0.73
   2 ?    6.3   0.1    0.0056        14      12      63 ..     265     316 ..     256     323 .. 0.79
   3 ?    4.3   1.7     0.024        60       2      56 ..     302     356 ..     301     372 .. 0.86
   4 ?    6.5   0.9    0.0051        13       5      72 ..     334     401 ..     330     401 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.31
      DUF883  41 erarerlrdaeeavaerakeaaeaaddyV 69 
                 ++ r+ l++ ++ +  + ++a++a ++++
  CCD23425.1 110 RQIRDDLQNKKKYALSQYNDAVKAFNEFI 138
                 45666666666666666666666666655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0056
      DUF883  12 adleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaae 63 
                 + le   ++aa+ a++e+e+++ + +++ e++  ++++a++++ e  +++ e
  CCD23425.1 265 KGLEGWGENAAQFAKDEYEDIKWQFSNSTEKLNGKIDEATQKLNEAQRKVNE 316
                 5566677889999999999999999999999999999999988888777765 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.024
      DUF883   2 eleaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavae 56 
                 e+++ l+++  +++e  +++ + ++++ +el ++++ + e+a+ +l++a++++++
  CCD23425.1 302 EATQKLNEAQRKVNETKQKWWEFGEKKNDELYKEAQRQYENAKVELDNANKSLQD 356
                 5678889999999999999999999999999999999999999999999998887 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0051
      DUF883   5 aeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVren 72 
                 +e +   ++++  l++a+++ ++  +++  +  e+ +++ ++l++ +++v e++++ +++a+dyV+++
  CCD23425.1 334 KEAQRQYENAKVELDNANKSLQDWNDKISGKFWEKTDKSIDSLKKGSNEVNESVQRNMNKAQDYVQDK 401
                 5555556666666777777777777888888888999999999**********************985 PP

>> Apolipoprotein  Apolipoprotein A1/A4/E domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.17   4.3e+02     104     128 ..      81     106 ..      63     174 .. 0.59
   2 ?   11.7   5.4   6.8e-05      0.17      60     162 ..     285     401 ..     260     402 .] 0.60

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.17
                     HHHHHHHHHHHHHHHHC.HHHHHHHH CS
  Apolipoprotein 104 lrerlerhvealkarla.pyveelrq 128
                     l++++++ ++alk++++ p ++ + +
      CCD23425.1  81 LKQGIQDDLSALKTTFWnPSSQHMET 106
                     34444444555555555333333332 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 6.8e-05
                     HHHCCCHHHHHHHHHCCHHHHHHHHHHHHCHHCCHHCHCCHCHH....HHHHHHHHHHHHHHHHCHHHHHHH...........HHHHHHHHHHHH CS
  Apolipoprotein  60 vqeqlgqnleelrqrlapyteelrerlaadaeelqeqlavyaee....lrerlerhvealkarlapyveelr...........qklaerleelke 139
                     ++ q+  ++e+l+ +++++t++l+e ++++++e +++  + +e+    l ++++r  e+ k  l+    +l+           +k +++++ lk+
      CCD23425.1 285 IKWQFSNSTEKLNGKIDEATQKLNE-AQRKVNETKQKWWEFGEKkndeLYKEAQRQYENAKVELDNANKSLQdwndkisgkfwEKTDKSIDSLKK 378
                     5556666666666666666666655.455666666666555555444455555555555555555555555555555555555566666666666 PP

                     -----..-----SSSHHHHHHHT CS
  Apolipoprotein 140 slaphaeeveerlssrveelrek 162
                       ++  e+v+ ++++  + +++k
      CCD23425.1 379 GSNEVNESVQRNMNKAQDYVQDK 401
                     66666666666666666666554 PP

>> YfdX  YfdX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.031        79     110     131 ..     124     145 ..     119     177 .. 0.83
   2 ?    6.2   2.5    0.0036       9.3      14      43 ..     297     326 ..     296     400 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.031
                 HHHHHHHHHHHHHHHHTT-HHH CS
        YfdX 110 LatypaavkkAaelleegkyye 131
                 L +y +avk+  e+++++ky++
  CCD23425.1 124 LSQYNDAVKAFNEFIDNSKYNN 145
                 7899999999999999999975 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0036
                 TT-HHHHHHHHHHHHHHHTS-HHHHHCCB- CS
        YfdX  14 qgdtkeAkkllekAqgkleaaladdpklvk 43 
                 +g+++eA++ l++Aq+k ++ ++++ ++  
  CCD23425.1 297 NGKIDEATQKLNEAQRKVNETKQKWWEFGE 326
                 799999999999999999999999999933 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   2.8    0.0034       8.7     165     263 ..      83     185 ..      11     250 .. 0.63
   2 ?    8.1   7.3    0.0007       1.8     134     238 ..     274     386 ..     272     402 .] 0.45

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0034
  Exonuc_VII_L 165 eekkqrleklasrlkspeellerkrqrldeleerleralkkqlkkkrerleelkerl.kekleekkerlkklkerle....lleekkerleeleekl 256
                   +  +  l++l++++ +p+++  + +q+ ++++++l+++ k +l++ + +++ ++e + ++k+++k+  ++++k+++      l+++  +++++e++ 
    CCD23425.1  83 QGIQDDLSALKTTFWNPSSQHMETEQE-RQIRDDLQNKKKYALSQYNDAVKAFNEFIdNSKYNNKEWLYNSVKNQVIdakeALDQAIYNMNHQENNS 178
                   333445666666665555543333333.345667777666667777777777665553333333332223332222233334555555555555555 PP

  Exonuc_VII_L 257 ealsplk 263
                   + l p+k
    CCD23425.1 179 SILRPKK 185
                   5555554 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0007
  Exonuc_VII_L 134 aAelvvpdkaeleeqleelerrlekaikr...lleekkqrleklasrl.....kspeellerkrqrldeleerleralkkqlkkkrerleelkerlk 222
                   aA+++  + ++++ q+++ +++l+ +i++   +l+e+++++++++++      k+++el++++++++++++ +l++  +k+       l+  +++++
    CCD23425.1 274 AAQFAKDEYEDIKWQFSNSTEKLNGKIDEatqKLNEAQRKVNETKQKWwefgeKKNDELYKEAQRQYENAKVELDN-ANKS-------LQDWNDKIS 362
                   7888888888888888888888887776411144555555555555555555434555555555555555555555.2223.......222222221 PP

  Exonuc_VII_L 223 ........ekleekkerlkklker 238
                           +++++ k+  ++++e+
    CCD23425.1 363 gkfwektdKSIDSLKKGSNEVNES 386
                   111111111222222222222111 PP

>> DMPK_coil  DMPK coiled coil domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00022      0.56      13      50 ..      82     118 ..      80     123 .. 0.83
   2 ?   -0.4   1.8      0.51   1.3e+03      14      49 ..     305     337 ..     300     345 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00022
   DMPK_coil  13 kQslqeeLekvkaanlafeskLkeaEkknreLeeeleq 50 
                 kQ++q+ L + k++  + +s+  e+E+  r++ ++l++
  CCD23425.1  82 KQGIQDDLSALKTTFWNPSSQHMETEQ-ERQIRDDLQN 118
                 9************************96.4556666655 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.51
   DMPK_coil  14 QslqeeLekvkaanlafeskLkeaEkknreLeeele 49 
                 Q l+e  +kv +++++        Ekkn eL +e +
  CCD23425.1 305 QKLNEAQRKVNETKQKW---WEFGEKKNDELYKEAQ 337
                 55555555555555543...2236888888888765 PP

>> DUF4398  Domain of unknown function (DUF4398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.34   8.7e+02      28      37 ..     159     168 ..     152     180 .. 0.70
   2 ?   -3.5   0.1       6.7   1.7e+04      17      27 ..     202     212 ..     200     213 .. 0.62
   3 ?    4.8   0.6     0.017        42      17      60 ..     273     315 ..     260     321 .. 0.63
   4 ?    7.8   4.0     0.002       5.1      27      63 ..     301     344 ..     278     356 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.34
     DUF4398  28 eAreaLaqAe 37 
                 +A+eaL+qA 
  CCD23425.1 159 DAKEALDQAI 168
                 6888888885 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.7
     DUF4398  17 gaeeyApaele 27 
                  a+e A +ele
  CCD23425.1 202 TAQEFAREELE 212
                 46667777766 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.017
     DUF4398  17 gaeeyApaeleeAreaLaqAeaamaekdyeeAdhlaylAerdae 60 
                  a++ A++e+e+ + ++    ++  +++ +eA + + +A+r+++
  CCD23425.1 273 NAAQFAKDEYEDIKWQFSNSTEKL-NGKIDEATQKLNEAQRKVN 315
                 566677777777777777666665.3333337777777777654 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.002
     DUF4398  27 eeAreaLaqAea........amaekdyeeAdhlaylAerdaelAe 63 
                  eA+++L++A++         +++++++  d+l+++A+r+ e A+
  CCD23425.1 301 DEATQKLNEAQRkvnetkqkWWEFGEKK-NDELYKEAQRQYENAK 344
                 4566666666663333332533344443.89********988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2576  (0.143678); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 2640.61
//
Query:       CCD23426.1  [L=988]
Description: hypothetical protein NDAI_0B03920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.8e-35  120.4   8.5    2.3e-34  118.9   8.5    1.9  1  Peptidase_M1    Peptidase family M1 domain
    1.4e-30  106.9   5.5    1.4e-30  106.9   5.5    2.3  2  Peptidase_M1_N  Peptidase M1 N-terminal domain
    7.5e-12   45.4   0.5    1.5e-11   44.4   0.5    1.5  1  ERAP1_C         ERAP1-like C-terminal domain
  ------ inclusion threshold ------
      0.021   14.2   0.2      0.021   14.2   0.2    1.8  2  Aminopep        Putative aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   8.5   5.1e-38   2.3e-34       1     218 []     252     511 ..     252     511 .. 0.71

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 5.1e-38
                   HHHHHHHHHHHHHHHHHTS--SSS.......EEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTT.S-HHHHHHHHHHHHHHHHHHHBTTTEEESSG CS
  Peptidase_M1   1 yalevtkkllefleeyfkvpYplp.......kldlvalpdfsagAMEnwglityreelllvdpen.ssesdkrsvaeviaHElaHqWfGnlVtmkwW 89 
                   ++l++ +k++ +le+ f+++++         kld+v+lp+ + +AMEn+gli+++ ++ll++p++ +++s +++++++i+HEl+HqW+Gn++++++W
    CCD23426.1 252 FTLDTIQKYVPLLEKFFQFNFASIfkngfktKLDFVLLPNLADMAMENFGLIVIQMNHLLLTPHQlANDSLRNQLEQLIVHELVHQWIGNYISFDSW 348
                   6899999*************99877788989****************************9999886899999************************* PP

                   GGGHHHHHHHHHHHHHHHHHHSCCCH...............CHHHHHHHCHHHH.HHHHTSTTHHHSS..GG-GSHHH...HHHTSSHHHHHHHHHH CS
  Peptidase_M1  90 ddlwLnEGfatyleylildklepewe...............vseqllleeveea.lsedaldeshpit..qevekpse...idevFdsiaYeKGasl 165
                   +++w+nE+fat+l+++++++ ++  e               +  + +l++v+++ ls+  +++++ ++  ++ +k ++   +++vFd+ +Y KG+ +
    CCD23426.1 349 EHMWFNESFATWLAIHLTNSGNEMHEdsssywyddqyligmI--DSQLNNVHNHsLSSMTIHQNSAMIkeENEKKRKDilvTNDVFDNDSYIKGIIM 443
                   ******************997773335678887888777532..333344433303333333333333452444444423269************** PP

                   HHHHHHHCTHHH.......HHHHHHHHHHHCTTEE.......E-HHHHHHHHHHCCC.SCHHTHHHHH CS
  Peptidase_M1 166 lrmlekllgeev.......FqkglksYlkefkykn.......aetedlwdaleealn.kdisevmdtw 218
                   lr+l+ ++ +++       + ++  s +++ k +n        + +d+w+++ + l+ ++i +++++w
    CCD23426.1 444 LRSLQLTIQQQEdgnhvdlLSNAFASLFQQEKTENnnlhlkpCKLMDIWNQIGKYLKsENIPNFISSW 511
                   ******99865322222224444555555433333111111133456666666644456777777666 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   5.5     3e-34   1.4e-30       3     186 .]      14     209 ..      12     209 .. 0.89
   2 ?   -0.8   0.6      0.34   1.5e+03      29      65 ..     397     443 ..     382     477 .. 0.58

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 3e-34
                     EEEEEEEEEETTTTEEEEEEEEEEEES...S-ECEEEEEESSEEEECEEEEECTTCTCEEEEEEEECTTTTCEEEEECCEEET.....TCEEEEE CS
  Peptidase_M1_N   3 ehYdldlkidlkektfkGsvtitlqlk...eatseivldakdlkiksvslsaevksesvkidfkieqkdeelltiklkeslqq.....tskytLe 89 
                     ++Y+l+l+id+++  fkG vti+ +l     + +ei l++k+l ++s+ ++ + k++s k++ +i++++ + l+i  +e++ q     +++++++
      CCD23426.1  14 DQYNLQLDIDPSKTNFKGIVTIAATLLtnaTSLKEIKLHSKNLAVTSAHILYSTKDDS-KTNLSINYDEINQLVILKPENNAQslslsSTTFEIQ 107
                     58**********************99986667789***********999997666666.777788777777777777777777799988999999 PP

                     EEEEEE-.BSSSSEEEEEEEEE.TSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEET...TCEEEEEEEEE CS
  Peptidase_M1_N  90 ieyegel.ndklaGlykstYtd.kgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeesekle...ngqkiteFeqt 179
                       y+g + ++++ G++k+  ++ + + +++++T++++ +AR++fPC+De s K+  ++si++ k  t+lSn p+e++ +++   ++ + t+F++t
      CCD23426.1 108 LSYTGSInETSTYGVFKTLLKNnSKKDNFIIATHCQPSFARYIFPCIDELSSKSVIELSIITTKGLTVLSNAPIEQVVEKKsvrSNCTLTTFNKT 202
                     99*****778999****99888444559***********************************************9999887878889******* PP

                     ESBEGGG CS
  Peptidase_M1_N 180 pkmstYL 186
                     p m+t L
      CCD23426.1 203 PLMTTSL 209
                     *****87 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.34
                     S..S-ECEEEEEESSEEE........ECEEEEECTTCTCEEEEEEEE CS
  Peptidase_M1_N  29 k..eatseivldakdlki........ksvslsaevksesvkidfkie 65 
                     +  ++ s+ ++++++ +i        k++ + ++v ++++ i+  i 
      CCD23426.1 397 VhnHSLSSMTIHQNSAMIkeenekkrKDILVTNDVFDNDSYIKGIIM 443
                     34477889999999999944433333333333333333333333333 PP

>> ERAP1_C  ERAP1-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.5   3.5e-15   1.5e-11       2     297 ..     587     953 ..     586     971 .. 0.74

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 3.5e-15
                 EEESGGG-SSSEEEE-HHHH.HHHHHHHH........GGGS-HHHHHHHHHHHHHHH....HTTSS-HHHHHHGGG.G...G..GG--SHHHHHH.... CS
     ERAP1_C   2 vllNdddtGyyrVnYdeesl.aalleqll........skklspldRaglisdafala....ragelsaadlldlllgy...l..anEtdylvwsq.... 78 
                 +l N ++++ yrV+Y+ e + ++++++ +        s++l+ ++ + ++ d+ a+     + + ++++ l++++ ++   l  ++  d  +w+     
  CCD23426.1 587 FLCNNESQAMYRVSYESEIYyDQFISNTTtttttiggSTTLDRINLIKILKDLSAIInnvhYCKPIHIKGLFKITNHLidqLkdRDAHDDNLWEPlsia 685
                 689************666655666664445778888888899999999999999988555557788899999999977565234556667777777777 PP

                 ..HHHHHHHHHHHHTTST..THHHHHHHHHHHHHHHHHHHHHT...TTS-HHHHHH.HHHHHHHHHTT-HHHHHHHHHHHHHHHCSTT.....-.S-HH CS
     ERAP1_C  79 ..alsqlatlksllsadp..lyaalkaflrklleplaeklgwe..pgeshldaqlr.slllsaacaagdpevveearklfkawlegdd.....l.ippd 164
                   +l +l++++s +s d    ++++++ ++kl+      ++we  ++  +   +l   + +s+    ++pe ++   k+++  +++ +     + ip  
  CCD23426.1 686 msILLNLERCYSKYSGDYydNEKKFNEIVEKLVGESST-INWEltKSRRYEAFELEtLSYISII-FKNHPEIIKINEKYYDLLRSD-NlkisgNlIPFK 781
                 77888888888888733233667999999999999988.99*5435578888888844555555.889***************763.33676755**** PP

                 HHHHHHHHHHHH.S-HHHHHHHHHHHH.............C-SSH..HH..HHHHHHHHCC-.S-HHHHHHHHHHCTTT..S-GGGHHHHHHHH..H.. CS
     ERAP1_C 165 lrwavycalaan.ggeaewdalleryk.............dtsap..se..keaalralaat.pdpellerllnfvlesdevrnqdlrallagl.an.. 241
                 l ++++ + + + ++ ++w+  ++  k             ++s +  +e     + +  ++t +++e++ ++ln++  ++++  + +  +l+g+ +n  
  CCD23426.1 782 LIGSIFLVNVEQfTNGKQWKRFINYAKdydrlmanvrlegESS-KevQElfHHELWSYAGYTnKTEEVVMKVLNYI--DSNLELELVPLILEGIsSNfn 877
                 **********997788877777766542323333333443222.122334444666777765155777999*****..889*************66699 PP

                 ................STTHHHHHHHHHHHCHCCHHHHTSSTS.CH...HHHHHHHHTT--SHHHHHHHHHHHCHT CS
     ERAP1_C 242 ................npegrellwefvkenwdalakrwsgge.il...drivkgllpgftseeelaeieaffadk 297
                                 +    ++ w+++++n++++ ++ +++  ++    +++++++   ++e++   ie+f+++ 
  CCD23426.1 878 rvvvaskkqesdcsdvSLSVGDIFWKWFMDNFNKWTNKCKNNKsMAdnfHTLISIAFDYRSTESKNILIEDFIESY 953
                 99999999999999988888889999*************8533244222777888888888999999999999775 PP

>> Aminopep  Putative aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   4.7e-06     0.021     148     182 ..     324     364 ..     316     432 .. 0.77
   2 ?   -3.2   0.1      0.94   4.2e+03     164     192 ..     703     731 ..     702     741 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.7e-06
    Aminopep 148 eelarlifHElaHqvl..Yvkgdt....afnEsfAtaVere 182
                 ++l +li+HEl+Hq +  Y++ d+     fnEsfAt+++ +
  CCD23426.1 324 NQLEQLIVHELVHQWIgnYISFDSwehmWFNESFATWLAIH 364
                 6899**********8666**987633336*******97654 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.94
    Aminopep 164 YvkgdtafnEsfAtaVeregverwlaaeg 192
                 Y  ++ +fnE   + V+++ + +w  +++
  CCD23426.1 703 YYDNEKKFNEIVEKLVGESSTINWELTKS 731
                 7889999***9999999999999975544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (988 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 6389.86
//
Query:       CCD23427.1  [L=161]
Description: hypothetical protein NDAI_0B03930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-50  171.4  44.9    1.4e-50  171.2  44.9    1.0  1  Tropomyosin_1    Tropomyosin like
    1.5e-06   28.4  30.6    0.00059   20.0  16.3    2.1  2  KLRAQ            Predicted coiled-coil domain-containing prot
    3.9e-05   23.1  41.1     0.0093   15.4  16.9    2.2  2  Tropomyosin      Tropomyosin
    0.00087   19.3  24.5      0.004   17.2  12.5    2.2  2  Laminin_II       Laminin Domain II
     0.0012   18.9   9.5     0.0012   18.9   9.5    2.6  2  CENP-F_leu_zip   Leucine-rich repeats of kinetochore protein 
     0.0022   18.2  36.5      0.063   13.5  14.8    2.0  2  ATG16            Autophagy protein 16 (ATG16)
     0.0026   17.1  40.1        2.9    7.2  39.9    2.8  1  GAS              Growth-arrest specific micro-tubule binding
     0.0036   17.4   2.3     0.0036   17.4   2.3    2.8  3  MbeD_MobD        MbeD/MobD like
     0.0051   17.3  31.1     0.0067   16.9  31.1    1.2  1  Fez1             Fez1
     0.0055   15.6  40.1      0.023   13.6  16.6    2.1  2  Spc7             Spc7 kinetochore protein
      0.007   15.6  14.4      0.007   15.6  14.4    2.7  2  Taxilin          Myosin-like coiled-coil protein
     0.0073   15.9   9.1     0.0073   15.9   9.1    2.0  2  CENP-K           Centromere-associated protein K
     0.0078   16.5  30.2       0.12   12.7  10.4    3.7  3  BLOC1_2          Biogenesis of lysosome-related organelles co
  ------ inclusion threshold ------
       0.01   15.6   9.6       0.01   15.6   9.6    4.6  4  DivIC            Septum formation initiator
      0.012   16.2  49.8       0.36   11.3  22.6    2.1  2  APG6_N           Apg6 coiled-coil region
      0.013   15.6   5.8      0.013   15.6   5.8    4.9  4  bZIP_2           Basic region leucine zipper
      0.023   14.6   4.3      0.029   14.3   4.3    1.2  1  Glyco_hydro_44   Glycoside hydrolase family 44
      0.066   13.4  14.6       0.43   10.8   0.2    3.9  3  WXG100           Proteins of 100 residues with WXG
      0.079   13.4  31.1       0.72   10.3   2.8    4.6  4  FlaC_arch        Flagella accessory protein C (FlaC)
      0.086   12.6  40.3       0.86    9.4  40.3    2.0  1  ERM              Ezrin/radixin/moesin family
      0.097   13.0  30.0        1.9    8.9   3.1    3.9  4  CLZ              C-terminal leucine zipper domain of cyclic n
       0.12   12.9  14.8        8.4    6.9   0.1    3.9  3  NPV_P10          Nucleopolyhedrovirus P10 protein
       0.12   10.5  32.4       0.27    9.4  30.8    1.9  1  EzrA             Septation ring formation regulator, EzrA
       0.12   11.6  31.6       0.18   11.1  13.8    2.3  2  DUF3450          Protein of unknown function (DUF3450)
       0.13   12.1  24.1       0.76    9.6  13.0    2.1  2  Sec34            Sec34-like family
       0.15   12.4  42.3          1    9.8  18.3    2.3  2  Uso1_p115_C      Uso1 / p115 like vesicle tethering protein, 
       0.21   12.1  47.8        2.9    8.4  19.7    4.0  3  ZapB             Cell division protein ZapB
       0.23    8.9  31.8       0.26    8.7  31.8    1.0  1  DUF3584          Protein of unknown function (DUF3584)
       0.24   11.4  19.8        1.1    9.4   6.2    2.4  2  DUF1664          Protein of unknown function (DUF1664)
       0.27   11.0  33.4        2.8    7.6  33.4    2.4  1  DUF4201          Domain of unknown function (DUF4201)
        0.3   10.9  32.1        1.3    8.8  11.4    2.1  2  DUF724           Protein of unknown function (DUF724)
       0.37   10.1  20.7        0.5    9.7  20.7    1.2  1  DUF4407          Domain of unknown function (DUF4407)
       0.42   10.7  33.7       0.15   12.1  13.3    2.8  3  ADIP             Afadin- and alpha -actinin-Binding
       0.47   10.5  48.7      0.082   12.9  20.9    3.5  3  TMF_DNA_bd       TATA element modulatory factor 1 DNA binding
       0.54   11.1  47.4       0.13   13.1  10.2    4.0  4  Rho_Binding      Rho Binding
       0.58   10.2  44.7        2.3    8.3   9.3    3.2  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
       0.58   10.1  42.5       0.67    9.9  17.7    3.2  3  Prefoldin_2      Prefoldin subunit
       0.59    9.9  17.3        9.7    5.9   3.2    2.9  4  Lectin_N         Hepatic lectin, N-terminal domain
       0.94    8.5  30.3       0.32   10.1  11.0    2.0  2  Atg14            Vacuolar sorting 38 and autophagy-related su
          1    9.5  40.6        4.3    7.5   0.6    4.6  4  bZIP_1           bZIP transcription factor
          1    9.7  38.9       0.21   11.9  15.6    2.3  2  OmpH             Outer membrane protein (OmpH-like)
          1    9.9   7.2        8.1    7.0   0.3    3.7  3  HisKA_3          Histidine kinase
        1.2    9.1  37.3        7.2    6.7   1.5    3.7  3  Sec2p            GDP/GTP exchange factor Sec2p
        1.4    8.5  22.2        2.2    7.8   2.5    2.7  2  Fzo_mitofusin    fzo-like conserved region
        1.4    9.0  39.1         18    5.4  15.8    3.2  2  Mod_r            Modifier of rudimentary (Mod(r)) protein
        1.7    8.3  22.6        2.7    7.7   8.0    2.1  2  DUF745           Protein of unknown function (DUF745)
          2    8.7  36.5        3.2    8.0   2.4    3.1  2  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
        2.1    8.5   6.3        2.5    8.2   5.3    1.7  1  DUF4107          Protein of unknown function (DUF4107)
        2.5    8.5  44.1        1.6    9.1  18.0    2.5  2  DUF4200          Domain of unknown function (DUF4200)
        2.5    8.2  39.6       0.93    9.6  16.3    2.7  2  DHR10            Designed helical repeat protein 10 domain
        2.5    8.4  39.4        1.1    9.5   5.6    4.0  4  Spc24            Spc24 subunit of Ndc80
        2.7    8.9  37.3        1.3   10.0  18.9    2.1  2  PRKG1_interact   cGMP-dependent protein kinase interacting do
          3    7.6  34.9         10    5.9  24.9    2.1  2  FAM184           Family with sequence similarity 184, A and B
          3    6.7  30.8        1.2    8.1  18.9    2.1  2  IFT57            Intra-flagellar transport protein 57
        3.1    7.7  40.8       0.61   10.0  13.5    3.1  3  Ax_dynein_light  Axonemal dynein light chain
        3.1    7.2  38.7        3.7    6.9   4.1    2.1  2  DUF3552          Domain of unknown function (DUF3552)
        3.1    8.2  31.5        3.5    8.1  12.6    2.9  1  CENP-H           Centromere protein H (CENP-H)
        3.5    7.9  28.3        1.2    9.3   2.5    2.8  2  HMMR_C           Hyaluronan mediated motility receptor C-term
        4.1    7.0  32.7        2.6    7.6  27.8    2.0  2  PI3K_P85_iSH2    Phosphatidylinositol 3-kinase regulatory sub
        4.1    8.0  19.0    1.8e+04   -6.2  19.0    3.3  0  YtxH             YtxH-like protein
        4.3    7.8  15.0       0.86   10.0   0.8    3.9  3  LPP              Lipoprotein leucine-zipper
        4.3    6.9  37.9         29    4.2  37.9    2.0  1  Lebercilin       Ciliary protein causing Leber congenital ama
        4.9    6.9  42.3        5.2    6.9  21.9    2.2  2  KASH_CCD         Coiled-coil region of CCDC155 or KASH
          6    7.7  23.3    1.9e+03   -0.4   0.0    3.2  1  Occludin_ELL     Occludin homology domain
        6.6    7.3  32.1        4.7    7.8  13.1    3.1  3  Spectrin         Spectrin repeat
        6.8    7.2  39.3       0.18   12.2   2.7    3.9  3  KELK             KELK-motif containing domain of MRCK Ser/Thr
        7.3    7.8  27.4         13    6.9  23.2    2.8  2  SOGA             Protein SOGA
          8    6.6  25.4        7.3    6.8   9.6    2.9  2  Med30            Mediator complex subunit 30
        9.2    6.5  39.9        7.3    6.8  17.9    3.5  3  Cnn_1N           Centrosomin N-terminal motif 1
        9.5    4.7  34.8        3.8    6.0  16.7    2.0  2  FapA             Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2  44.9   5.4e-53   1.4e-50       1     143 []       7     149 ..       7     149 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 5.4e-53
  Tropomyosin_1   1 klnsLkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkL 96 
                    kln+Lkleae++qek+eel+e+ K+ eqen+eke+eiksL++knqqle+evekle++lke+k  ae+s+++k+nne++t+k+q LEeeleesd+kL
     CCD23427.1   7 KLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDSTNLKSNNENFTKKNQDLEEELEESDAKL 102
                    8*********************************************************************************************** PP

  Tropomyosin_1  97 kettekLretdvkaeelERkvkaLeqerdewekkyeeleekykeakk 143
                    ket+ekLre+d++ae+l Rkv aLe+erd+wekk+ee+++ky+ea+k
     CCD23427.1 103 KETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQK 149
                    *********************************************96 PP

>> KLRAQ  Predicted coiled-coil domain-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0  16.3   2.3e-06   0.00059      16      80 ..      10      80 ..       1      87 [. 0.75
   2 !   14.2   7.4   0.00016      0.04      26      94 ..      86     154 ..      83     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.3e-06
       KLRAQ 16 vLkkavleEqskeaslkeelkekeqslrkseqEvdsLtFrNkqLekrvellqeelevee...kk...vksk 80
                 Lk      q+k ++lke+ k+ eq+    e+E+ sL+ +N+qLe  ve l +el++++    +   +ks+
  CCD23427.1 10 NLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKllaEDstnLKSN 80
                55555556699*********************************************876543222222222 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 0.00016
       KLRAQ  26 skeaslkeelkekeqslrkseqEvdsLtFrNkqLekrvellqeeleveekkvksksknkseaqkkeeek 94 
                 +k+++l+eel e +++l+ + + +   + + +qL ++v +l ee +  ekk++    +  eaqk+ +e+
  CCD23427.1  86 KKNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEI 154
                 699*****************9999999**********************99666555566666666654 PP

>> Tropomyosin  Tropomyosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4  16.9   3.6e-05    0.0093      42     111 ..       5      74 ..       2      80 .. 0.82
   2 !   13.1  18.0   0.00018     0.046      32     108 ..      75     151 ..      71     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.6e-05
  Tropomyosin  42 nrriqlleeelerteerleealekLeeaekaadeserarKvlEnrelkdeekleeleaqlkeakeiaeea 111
                  + ++++l  e e+ +e+ ee +e+ +++e+++ e+e+ +K l +++++ e+ +e+le++lke k +ae+ 
   CCD23427.1   5 REKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDS 74 
                  5667777788888889999988999999999999999999999999999999999999999999998886 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00018
  Tropomyosin  32 ekaeaEvaalnrriqlleeelerteerleealekLeeaekaadeserarKvlEnrelkdeekleeleaqlkeakeia 108
                  ++ +++ + ++++ q leeele+++ +l+e+ ekL e   +a++  r + +lE+     e k ee  a+++ea++  
   CCD23427.1  75 TNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKEL 151
                  66778888999999999999999999999999999999999999999999999988888888888888888886533 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2  12.5   1.6e-05     0.004      14      91 ..       3      80 ..       1      87 [. 0.94
   2 ?    6.3   6.7     0.034       8.8      25      95 ..      87     154 ..      76     161 .] 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.6e-05
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHH CS
  Laminin_II 14 evleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdn 91
                ++ e+l++l+ + e ++ek++e++++ ++++++  ++ + i++ +++ ++Le ++++L+d lke k l e s +l+ n
  CCD23427.1  3 KIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDSTNLKSN 80
                678999***************************99************************************9999987 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.034
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHHHHHHHHHH...HHHHHHHH CS
  Laminin_II  25 nlentkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklkelkqleeassslsdnisei 95 
                 + + ++e+l+e +++++et ek++++    ++ +r+v  Le++ ++ ++k +e+  + e+ +   ++++ei
  CCD23427.1  87 KNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQ---KELDEI 154
                 556678899999999999999999999999999*****************999999988855...444444 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9  29.7      0.39     1e+02      36     127 ..       4      98 ..       1     105 [. 0.81
   2 !   18.9   9.5   4.7e-06    0.0012       3      64 ..     100     161 .]      98     161 .] 0.95

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.39
  CENP-F_leu_zip  36 seenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqe...kvqmkeeskaa 127
                     + e++++++leaE+ +++ e+lke+ ++ ++e  e e ++++l+  +++Le e++k  ++ +e + l ++ +nl +++E+    +  ++ee +++
      CCD23427.1   4 IREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDSTNLKSNNENFtkkNQDLEEELEES 98 
                     57899999**************************************************************9999888887533233334444333 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 4.7e-06
  CENP-F_leu_zip   3 kkklhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieel 64 
                      k +++ ekL+es  +a++L  kv +Le e  + e++ e+++   E++++e+ ++ + +e+l
      CCD23427.1 100 AKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAASLENL 161
                     688999************************************************99999876 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5  14.8   0.00025     0.063      85     155 ..       3      73 ..       1      76 [. 0.93
   2 !   10.3  15.4    0.0024      0.61      84     164 ..      75     155 ..      67     161 .] 0.87

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 0.00025
       ATG16  85 qlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqd 155
                 ++re l +l  + +  +++  el+e+ ++ e++  e+e+++++l++++++le++++++e+el+e + l +d
  CCD23427.1   3 KIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAED 73 
                 78999999999999**************************************************9877765 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0024
       ATG16  84 aqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLq 164
                 + l++  ++  k++++l++ l e  ++l++  ekl+e + + ++l +++ ale++++d e++ +e ++  ++ q El+   
  CCD23427.1  75 TNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIA 155
                 667888889999999999999999999999999999999999999999999999999999999999999999999998765 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  39.9     0.011       2.9      30     168 ..      17     154 ..       6     160 .. 0.43

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.011
         GAS  30 slKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykk 128
                 s+ e+ eelk++ ++ e+e  e ++e k+l+ + +++e eve+L+ +lk+ +   ++ +nlk+++++ +k+ +dl++e e    ++++  ++  e   +
  CCD23427.1  17 SWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESDLN 115
                 444555555555555555555555555555555555555555555555555555555555555555555555555444444444443333333333333 PP

         GAS 129 feaaiqevqqktglknllLekklkalqeelEkkeaqleev 168
                  e+  ++v    + +    ekk ++++++ E+++++l+e+
  CCD23427.1 116 AEQLGRKVIAL-EEERDDWEKKHEEITAKYEEAQKELDEI 154
                 33333333222.2222234444444444444444444444 PP

>> MbeD_MobD  MbeD/MobD like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   2.3   1.4e-05    0.0036      24      68 ..      16      60 ..       9      62 .. 0.93
   2 ?   -0.2   0.1       4.4   1.1e+03      41      41 ..      96      96 ..      66     129 .. 0.57
   3 ?    4.6   0.8      0.13        34      11      43 ..     125     150 ..     106     161 .] 0.65

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.4e-05
   MbeD_MobD 24 qeWesafaelqrmfeltqrenaaLseqvtgLsqQVesLseqvrRl 68
                + W++ ++el++ f+  ++en   ++ ++ Ls   ++L ++v++l
  CCD23427.1 16 ESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKL 60
                68********************9*******************988 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 4.4
   MbeD_MobD 41 q 41
                +
  CCD23427.1 96 E 96
                1 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.13
   MbeD_MobD  11 AlEqLQqdYeqrlqeWesafaelqrmfeltqre 43 
                 AlE+   d+e++++e    ++e q+       e
  CCD23427.1 125 ALEEERDDWEKKHEEITAKYEEAQK-------E 150
                 5666666666666666666665554.......4 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9  31.1   2.6e-05    0.0067      36     172 ..       4     140 ..       1     159 [. 0.66

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.6e-05
        Fez1  36 lkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqe...aeele 131
                 ++ +l +l+ + e+ +e+ +el+e++++ ++e+ + ene++  +++++ l+++vekle+elke++  +++ s++ +++ +e  ++k+q  e   +e+ +
  CCD23427.1   4 IREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAED-STNLKSN-NENFTKKNQDLEeelEESDA 100
                 5667777777777778888888888888888888888888888888888888888888888888773333.3222222.22222233333323355666 PP

        Fez1 132 elkreverlrae.LkeerqkkeeqassFeqERrtWqeeKekV 172
                 +lk+++e+lr++ L+ e+    +++ + e+ER  W++  e +
  CCD23427.1 101 KLKETIEKLRESdLNAEQ--LGRKVIALEEERDDWEKKHEEI 140
                 777777777654144443..4577889********9998876 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6  16.6   8.9e-05     0.023     198     263 ..       5      70 ..       2      76 .. 0.93
   2 !    7.1  18.4    0.0085       2.2     158     255 ..      70     156 ..      65     161 .] 0.48

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.9e-05
        Spc7 198 keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgw 263
                 +e+L++l+ e ++ ++++ee+k++ ++++++  e+e++i++l+++ ++le+e+++ e+ l+e+k  
  CCD23427.1   5 REKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLL 70 
                 589********************************************************9999876 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0085
        Spc7 158 LekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaer 255
                 L+++  +l++  ++++++ ++leeele+             ++L+e+ e+l+e + + e++ +++  l+e++++ e+k ee++++++e+++e+ e   
  CCD23427.1  70 LAEDSTNLKSNNENFTKKNQDLEEELEES-----------DAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAA 156
                 33333333333333333333333333322...........2356666666666666666666666666666666666666666666666666655443 PP

>> Taxilin  Myosin-like coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6  14.4   2.7e-05     0.007     246     307 ..       1      62 [.       1      63 [. 0.97
   2 ?    2.2  17.7      0.32        83     187     283 ..      64     149 ..      58     161 .] 0.44

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.7e-05
     Taxilin 246 mekmtkktkklEketnlwkskfektnkallemaeertekkkeieklkkkiqkLeklcraLqe 307
                 m+k+ +k+ +l+ e ++w++k+e+ +++  ++ +e+ ek++ei++l  k+q+Le+ +++L+ 
  CCD23427.1   1 MDKIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLED 62 
                 9******************************************************9999976 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.32
     Taxilin 187 krekeyllkeakeltkkvkalketekelkeqlnlYaeKfeefqdtLakSnelFatFkkEmekmtkktkklEketnlwkskfektnkallemaeerte 283
                  +e ++l++++++l+ + +++++++++l+e l+   +K +e  + L  S+          e++  k+  lE+e + w +k+e+  ++     ee ++
  CCD23427.1  64 LKETKLLAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESDLN-------AEQLGRKVIALEEERDDWEKKHEEITAKY----EEAQK 149
                 4555555555666666666666666666666665555555555555555433.......33333333333333333333333322221....11111 PP

>> CENP-K  Centromere-associated protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  18.1     0.041        10      90     167 ..       7      83 ..       1      87 [. 0.86
   2 !   15.9   9.1   2.9e-05    0.0073       3      86 ..      72     149 ..      70     161 .] 0.84

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.041
      CENP-K  90 klksqLelvlsiiqsknkklkedLkrEqewleeqqeilesLkektkelkkqvvafsektrksaelkekirkikeykee 167
                 kl ++L+l  +  q k ++lke+ k+  +   e+++ ++sL+ k+++l+++v+++ ++ +  + l e  +++k+ +e+
  CCD23427.1   7 KL-NNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDSTNLKSNNEN 83 
                 55.8899999***************95555556677789******************************999998776 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 2.9e-05
      CENP-K   3 tdveekadakeellkeceelwkeleecqskLsllgtetlvesdaqlslliarvklLtaeleqwekktpeiislneevllalgke 86 
                 +d+++  + +e+  k+ ++l +elee ++kL+ +  e+l esd + + l  +v +L +e + wekk+ ei +  ee       +
  CCD23427.1  72 EDSTNLKSNNENFTKKNQDLEEELEESDAKLKET-IEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQ-----K 149
                 567778899999*******************987.8**********************************65555443.....3 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7  10.4   0.00045      0.12      37      96 .]       2      65 ..       1      65 [. 0.88
   2 ?    0.2  13.8       3.7   9.5e+02      20      84 ..      41     109 ..      39     121 .. 0.77
   3 !    9.9   0.8    0.0034      0.87      33      68 ..     120     155 ..     113     161 .] 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00045
     BLOC1_2 37 kklkdvaaslekkleklnekyeelqpylqqidq..i..ekqvteLeeavseLDeyskeLEakfk 96
                +k+++++++l+ ++e  +ekyeel+++++q++q  i  e+++++L +  ++L+  + +LE+ +k
  CCD23427.1  2 DKIREKLNNLKLEAESWQEKYEELKEQFKQVEQenIekENEIKSLSTKNQQLEDEVEKLEDELK 65
                68999**************************8655622568*******************9876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 3.7
     BLOC1_2  20 edyklLeklNeaasekykklkdvaas...lekkleklnekyeelqpylqqid.qiekqvteLeeavseL 84 
                 +++k L + N++ + +++kl+d++++   l++++ +l++ +e++ ++ q ++ ++e++ ++L+e++++L
  CCD23427.1  41 NEIKSLSTKNQQLEDEVEKLEDELKEtklLAEDSTNLKSNNENFTKKNQDLEeELEESDAKLKETIEKL 109
                 678889999999999999999988772224566777888888888888888525888888899988887 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0034
     BLOC1_2  33 sekykklkdvaaslekkleklnekyeelqpylqqid 68 
                  +k+ +l+++ ++ ekk e++ +kyee q+ l++i 
  CCD23427.1 120 GRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIA 155
                 579999***********************9999986 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.8       1.1   2.8e+02      35      60 ..       3      28 ..       1      30 [. 0.56
   2 ?   15.6   9.6     4e-05      0.01      18      53 ..      28      62 ..      26      68 .. 0.91
   3 ?    2.5   6.2      0.47   1.2e+02      22      58 ..      70     107 ..      61     109 .. 0.76
   4 ?    1.7   2.8      0.86   2.2e+02      23      47 ..     134     158 ..     121     161 .] 0.54

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 1.1
                HHHHHHHHHHHHHCC-XXXXXXXXXX CS
       DivIC 35 klkaeneeLeaevkdLksdedyieer 60
                k++++ ++L+ e + ++  ++ ++e+
  CCD23427.1  3 KIREKLNNLKLEAESWQEKYEELKEQ 28
                55556666666666665555555554 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXX CS
       DivIC 18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksd 53
                ++kq++qe  ++++e+++l+ +n++Le+ev++L+ d
  CCD23427.1 28 QFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLE-D 62
                689******************************5.4 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX..XXXXXX CS
       DivIC  22 lkqeiaalqaelaklkaeneeLeaevkdLks..dedyie 58 
                 l ++ + l+ ++++ +++n++Le+e+++  +   ++ ie
  CCD23427.1  70 LAEDSTNLKSNNENFTKKNQDLEEELEES-DakLKETIE 107
                 66777889999999999999999999987.324555555 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.86
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  23 kqeiaalqaelaklkaeneeLeaev 47 
                 +++ ++++a++++ ++e +e +a +
  CCD23427.1 134 EKKHEEITAKYEEAQKELDEIAASL 158
                 4455555555555555555555555 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  22.6    0.0014      0.36      31      98 ..       7      71 ..       1      82 [. 0.81
   2 ?    8.5  22.5      0.01       2.7      35     120 ..      77     159 ..      68     161 .] 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0014
      APG6_N 31 flkklkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeee 98
                 l++lk e   +e+++e+ eel+e+++++e+e  e+++e+k l +++++le+e+++le el++ +   
  CCD23427.1  7 KLNNLKLE---AESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLA 71
                45555555...4446899*******************************************9977554 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.01
      APG6_N  35 lkkekkeeekqdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeld 120
                 lk+++++     ++ ++leeele+ +++ +e +e+L+e + + e+l +++ aleee ++ e++ e+   +y e q el e    l+
  CCD23427.1  77 LKSNNEN---FTKKNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAASLE 159
                 4444333...357889**************************************************************99877665 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   6.4       1.9   4.8e+02      22      54 .]       3      35 ..       2      35 .. 0.88
   2 ?   15.6   5.8   5.1e-05     0.013      25      54 .]      34      63 ..      34      63 .. 0.94
   3 ?    3.2   2.1      0.38        96      29      50 ..      76      97 ..      65     101 .. 0.73
   4 ?    1.7   1.3       1.1   2.8e+02      27      53 ..     123     149 ..     114     150 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1.9
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 22 kkkakeeeleervkeLeeeNaqLrqkveqLeke 54
                k ++k ++l+ ++++ +e+ ++L+++ +q+e+e
  CCD23427.1  3 KIREKLNNLKLEAESWQEKYEELKEQFKQVEQE 35
                66888899999999999999******9999998 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 5.1e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 25 akeeeleervkeLeeeNaqLrqkveqLeke 54
                ++++e e+++k+L+++N+qL+++ve+Le e
  CCD23427.1 34 QENIEKENEIKSLSTKNQQLEDEVEKLEDE 63
                578999**********************87 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.38
                HHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2 29 eleervkeLeeeNaqLrqkveq 50
                +l++ +++ +++N+ L++++e+
  CCD23427.1 76 NLKSNNENFTKKNQDLEEELEE 97
                4666677777888888887775 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  27 eeeleervkeLeeeNaqLrqkveqLek 53 
                  + lee+  + e++ +++ +k+e+ +k
  CCD23427.1 123 VIALEEERDDWEKKHEEITAKYEEAQK 149
                 455666666667766666666666666 PP

>> Glyco_hydro_44  Glycoside hydrolase family 44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   4.3   0.00011     0.029      53     157 ..      46     152 ..      19     157 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 0.00011
                     --GG....G-SSSTTEEE............EES--SS-..--SS--SSSSEEEHHH.....HHHHHHHHH--TSTTS--EEEESS-GGGHHHH-T CS
  Glyco_hydro_44  53 fseskygeqaapdsrwkedagngv..asdgvkikktae..lsltpdptdtsvyadeeftkewvnhlvkklgsasatgvkfysLDNEpelWssTHr 143
                     +s+++ + + ++++  +++   ++  a+d++++k ++e  + +++d++++ +++d+   ke ++ l +   +a++ g k+ +L  E + W++ H+
      CCD23427.1  46 LSTKNQQLEDEVEK-LEDELKETKllAEDSTNLKSNNEnfTKKNQDLEEELEESDA-KLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHE 138
                     44443333333333.33334444445555555544433113447888888888888.89999*******999*********************** PP

                     TT--S---HHHHHH CS
  Glyco_hydro_44 144 dvhpekvtydelle 157
                     ++  +  ++++ l+
      CCD23427.1 139 EITAKYEEAQKELD 152
                     **999877776655 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.5      0.52   1.3e+02      54      86 .]       2      34 ..       1      35 [. 0.57
   2 ?    4.8   2.6      0.13        33      41      85 ..      69     113 ..      38     114 .. 0.63
   3 ?   10.8   0.2    0.0017      0.43      48      83 ..     125     160 ..     115     161 .] 0.89

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.52
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
      WXG100 54 eewkqaaqklvdaLeeisealkqaanafedaDe 86
                +++++++++l+ + e+ +e+ ++ +++f ++++
  CCD23427.1  2 DKIREKLNNLKLEAESWQEKYEELKEQFKQVEQ 34
                555666666666666666666666666666554 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.13
                 CTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  41 WsGaaadafqaefeewkqaaqklvdaLeeisealkqaanafedaD 85 
                    + ++  ++  e+++++ q+l ++Lee   +lk++ +++++ D
  CCD23427.1  69 LLAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESD 113
                 344456666777788999999999999999999999888887765 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  48 afqaefeewkqaaqklvdaLeeisealkqaanafed 83 
                 a ++e + w ++ +++ +++ee +++l+++a+++e 
  CCD23427.1 125 ALEEERDDWEKKHEEITAKYEEAQKELDEIAASLEN 160
                 66778899************************9985 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.8    0.0028      0.72       2      35 ..       1      34 [.       1      39 [. 0.90
   2 ?    9.5   6.7    0.0049       1.3       4      39 ..      31      66 ..      30      72 .. 0.86
   3 ?    1.9   3.4       1.2     3e+02      22      32 ..      87      97 ..      70     128 .. 0.59
   4 ?    6.0   0.8     0.061        16       4      33 ..     132     161 .]     122     161 .] 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0028
   FlaC_arch  2 idelEnklsklsteletvkkeneelsksveelke 35
                +d++ +kl++l+ e e+ +++ eel+++ +++++
  CCD23427.1  1 MDKIREKLNNLKLEAESWQEKYEELKEQFKQVEQ 34
                689999*********************9999987 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0049
   FlaC_arch  4 elEnklsklsteletvkkeneelsksveelkenVkd 39
                ++E++  + + e++++ ++n++l+++ve+l+++ k+
  CCD23427.1 31 QVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKE 66
                56777777889*********************9864 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 1.2
   FlaC_arch 22 eneelsksvee 32
                +n++l++++ee
  CCD23427.1 87 KNQDLEEELEE 97
                44444444443 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.061
   FlaC_arch   4 elEnklsklsteletvkkeneelsksveel 33 
                 + E+k +++  + e ++ke++e+  s+e+l
  CCD23427.1 132 DWEKKHEEITAKYEEAQKELDEIAASLENL 161
                 568888888888999999999999998875 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  40.3    0.0033      0.86       7     135 ..      15     146 ..       1     161 [] 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0033
         ERM   7 kreleerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaea...eeeiqrlkesaekeeeekeklerklreaeleaarleeeserke 102
                  +  +e+ ++l+e++++ +++  e+e++++ L  k++++e e e+Le + +e     e  ++lk ++e+  ++ ++le++l+e ++++++  e+ ++ +
  CCD23427.1  15 AESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETkllAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESD 113
                 56779999***************************************9888874446778889999999999999999999999999999999999999 PP

         ERM 103 eeaerLkeeleeareaeeeakekllealstpsk 135
                  +ae+L +++++ +e+  + ++k  e++++ ++
  CCD23427.1 114 LNAEQLGRKVIALEEERDDWEKKHEEITAKYEE 146
                 999999999999999888888888887777632 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   1.2      0.53   1.4e+02      28      58 ..       3      33 ..       1      35 [. 0.58
   2 ?    2.9   8.2      0.55   1.4e+02      27      62 ..      30      65 ..      20      74 .. 0.47
   3 ?    8.0  10.5     0.014       3.6      12      68 ..      50     109 ..      49     112 .. 0.84
   4 ?    8.9   3.1    0.0073       1.9      24      70 ..     114     160 ..     107     161 .] 0.89

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.53
         CLZ 28 eleekverLessLeaLqtrlarLlaeyessq 58
                ++ ek+++L+ + e+ q +++ L +++++++
  CCD23427.1  3 KIREKLNNLKLEAESWQEKYEELKEQFKQVE 33
                4556666666666666666666666665554 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.55
         CLZ 27 keleekverLessLeaLqtrlarLlaeyessqrkLk 62
                k++e+   + e+++++L t+ ++L +e+e+ + +Lk
  CCD23427.1 30 KQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELK 65
                334433333344444444444444444444444443 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.014
         CLZ  12 dglLDeeaakag...aeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRitkL 68 
                    L+ e++k +   +e k l e  ++L+s+ e+++++ + L +e+e+s++kLk+ i+kL
  CCD23427.1  50 NQQLEDEVEKLEdelKETKLLAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKL 109
                 55677775665544578888999999********************************99 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0073
         CLZ  24 aeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqRitkLEk 70 
                  ++++l +kv  Le++ +  +++ + + a+ye++q++L +  + LE+
  CCD23427.1 114 LNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAASLEN 160
                 5689999*******************************999888886 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.4     0.046        12       9      65 ..       4      64 ..       1      65 [. 0.66
   2 ?    4.3   7.0      0.22        55      12      42 ..      42      72 ..      40     117 .. 0.74
   3 ?    6.9   0.1     0.033       8.4      15      60 ..     118     160 ..     112     161 .] 0.69

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.046
     NPV_P10  9 IradikavddkVdalqqqvddvqenlpdvteln....ekLdaqsaqLaeletkvenIqdiL 65
                Ir+  ++++   ++ q++ ++++e++++v++ n    +++ ++s++ ++le++ve+ +d L
  CCD23427.1  4 IREKLNNLKLEAESWQEKYEELKEQFKQVEQENiekeNEIKSLSTKNQQLEDEVEKLEDEL 64
                7777777777777888888888888888764321122457777777777777777777654 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.22
     NPV_P10 12 dikavddkVdalqqqvddvqenlpdvtelne 42
                +ik +++k + l+++v++++++l++++ l e
  CCD23427.1 42 EIKSLSTKNQQLEDEVEKLEDELKETKLLAE 72
                7999************999999999654443 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.033
     NPV_P10  15 avddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkven 60 
                 ++  kV al+++ dd +++++++   ++k ++ +++L+e+ +++en
  CCD23427.1 118 QLGRKVIALEEERDDWEKKHEEI---TAKYEEAQKELDEIAASLEN 160
                 56789999999999999988885...45555555555555554443 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  30.8     0.001      0.27     361     493 ..       2     142 ..       1     149 [. 0.75

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.001
                 HHHHHHHS-SS---STTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS........S-SS-S-TTTHHHHSTTTST CS
        EzrA 361 eeleekleekkvaYSelqeeleeleekleeieekqeeileslkslrkdEkrAreqldeikkelkeikrkie........ksnLPgiPesyleelkeasd 451
                 ++++ekl++ k    + qe++eel+e+ +++e++  e ++++ksl  ++++ ++++++++ elke+k   e        ++n    +++  eel+e++ 
  CCD23427.1   2 DKIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEdstnlksnNENFTKKNQDLEEELEESDA 100
                 4555666666666666677777777777777777777777777777777777777777777777777655421111111678999999999******** PP

                 TTHHHHHHHT-TT--HHHHHHHHHTTTTTSGGGTHHHHHHHH CS
        EzrA 452 eieelakeLekkpinikevnkrldeardlveklyektnelik 493
                 +++e++++L ++ +n +++ +++   ++  +  ++k +e++ 
  CCD23427.1 101 KLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITA 142
                 ***********************9999999999999998875 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  13.8   0.00069      0.18      19      85 ..       2      68 ..       1      80 [. 0.89
   2 ?    6.0  10.0     0.025       6.4      17      90 ..      87     160 ..      80     161 .] 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00069
     DUF3450 19 dqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasle 85
                d+++++ ++   +a++ q+k+++l+++ +++++e  + ++e++sl+ +n+qle+ v+++e e+++ +
  CCD23427.1  2 DKIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETK 68
                6778888888889999**********************************************99876 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.025
     DUF3450  17 tldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlvasqeqeiasleeqiee 90 
                 + +++++e e++ a+ +++ +k  ++d ++++l +++ al+ee ++ e++ e+ ++  +++++e++++  ++e+
  CCD23427.1  87 KNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAASLEN 160
                 55678888888888888888999999999999999999999999999999999999999999999999998886 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  13.0     0.003      0.76       9      91 ..       5      87 ..       1      91 [. 0.91
   2 ?    8.0   5.2    0.0097       2.5      10      82 ..      86     159 ..      82     161 .] 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.003
       Sec34  9 eeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyFeeldpitrkLnspgsslvks 91
                +e++++l  ++++ +e+ eel+e+fk+v+++  + +++ ++l +++++le+ +e++e++Lk  + l + +++L+s ++++ k+
  CCD23427.1  5 REKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDSTNLKSNNENFTKK 87
                788999999*****************************************************999999999999999985554 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0097
       Sec34  10 eecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLk.yFeeldpitrkLn 82 
                 ++ ++l e+++e   +L+e  ek ++ + + ++l ++   l ee+++ e+ +eei++k +   +eld+i  +L+
  CCD23427.1  86 KKNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEeAQKELDEIAASLE 159
                 66788999999999999999999999999999999999999999999999999999887526778888888876 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  19.3     0.055        14       6      72 ..       4      68 ..       1      82 [. 0.52
   2 ?    9.8  18.3    0.0039         1       5      84 ..      76     153 ..      72     158 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.055
  Uso1_p115_C  6 leseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeek 72
                 + ++ ++lk e+e+ + + ++l+++ ++ eq+  + + e++ k+l+ +n++le+e+ekl+ elke k
   CCD23427.1  4 IREKLNNLKLEAESWQEKYEELKEQFKQVEQE--NIEKENEIKSLSTKNQQLEDEVEKLEDELKETK 68
                 44555555555555555555555555555555..444444444445555555555555555555443 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0039
  Uso1_p115_C   5 eleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekekekqkEldD 84 
                  +l+s+++++ + n++l+ el++++ +l+++ +k  + +++ +a++l  ++++le+e ++ +++ +e   k++e+qkEld+
   CCD23427.1  76 NLKSNNENFTKKNQDLEEELEESDAKLKETIEK--LRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDE 153
                  68899999***********************99..99******************************************8 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  19.3     0.013       3.3       6      63 ..       8      65 ..       1      67 [. 0.83
   2 ?    8.4  19.7     0.011       2.9      20      71 .]      43     111 ..      40     111 .. 0.72
   3 ?    2.8   4.7      0.63   1.6e+02      22      64 ..     118     160 ..     114     161 .] 0.61

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.013
        ZapB  6 LeqLEskiqkaidtitlLqmeieeLkeeneelkeenreleeeneqlkeereawqerlk 63
                L+ L    ++  +++++L+++ +++++en e ++e++ l+ +n+ql++e e++++ lk
  CCD23427.1  8 LNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELK 65
                5555556666668999999999999999999999999999999999999999998887 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.011
        ZapB  20 itlLqmeieeLkeeneelkeenrele.................eeneqlkeereawqerlkkLLgklee 71 
                 i++L+ ++++L+ e+e+l++e +e +                 ++n+ l+ee e+  ++lk  ++kl+e
  CCD23427.1  43 IKSLSTKNQQLEDEVEKLEDELKETKllaedstnlksnnenftKKNQDLEEELEESDAKLKETIEKLRE 111
                 5555666666666666666665555566666666666666666************************97 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.63
        ZapB  22 lLqmeieeLkeeneelkeenreleeeneqlkeereawqerlkk 64 
                 +L  ++ +L+ee    +++ +e++++ e+ ++e  ++ + l++
  CCD23427.1 118 QLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAASLEN 160
                 4555566666666666666666666666666666666666665 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  31.8     0.001      0.26     376     532 ..       3     157 ..       1     160 [. 0.82

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.001
     DUF3584 376 dvqekydrrkqkikeeleeeleklkerleaireekdrlkaaieealealesqlrkqleaqkeelneeekelesrlselklrldsatateEeleqieead 474
                 ++ ek++++k +++ + +e+ e+lke+ +++ +e+ + k+++ + l+  ++ql+++ e+ + el+e +   e + + +    + ++ ++++ e++ee+d
  CCD23427.1   3 KIREKLNNLKLEAE-SWQEKYEELKEQFKQVEQENIE-KENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDSTNLKSNNENFTKKNQDLEEELEESD 99 
                 67777777777664.5677888888886666666666.7888889999999999999999999999988888888777778888888899999999999 PP

     DUF3584 475 ealekaqeelekaeaevealqaeeeqlrkkrdeadealqkaerrleqlrqaleeleeq 532
                 ++l++  e+l+++  + e+l ++  +l+++rd  +++++++ ++ e+ +++l+e+   
  CCD23427.1 100 AKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAAS 157
                 9999999999999999999999999999999999999999999999999999998765 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.4     0.016         4      56     118 ..       3      65 ..       1      69 [. 0.73
   2 ?    9.4   6.2    0.0041       1.1      48     123 ..      68     143 ..      65     161 .] 0.91

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.016
     DUF1664  56 slaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegleskle 118
                 ++++  ++L+ + ++ ++k +e ke  k++++e  e ++++++++++ +++++ ve+le +l+
  CCD23427.1   3 KIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELK 65 
                 455555666677777778888888888888888888888888888888888888888887776 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0041
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerieek 123
                 k l + s++l++  ++++++ + ++++l+e+ +  ke+ e++ e   + +++g++v +++e   ++e+k e+i +k
  CCD23427.1  68 KLLAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAK 143
                 556777899999999*****************************************99999999999999988765 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  33.4     0.011       2.8       1     158 [.       1     155 [.       1     161 [] 0.66

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.011
     DUF4201   1 mrkkrnelsklrlklislkhqlakiqeklekkeelgegLtlidFeqlqienqalnkkIeernkeLkrlkkkttktvhalthlkeklhmleselselkke 99 
                 m+k r++l +l+l+  s ++++++++e+ +++e+ + + ++++  +l ++nq+l++++e  ++eLk+ k+ + ++     +lk +    ++++++l++e
  CCD23427.1   1 MDKIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIE-KENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDST----NLKSNNENFTKKNQDLEEE 94 
                 678899***************************95444.89*************************9998887764....4444444444444445555 PP

     DUF4201 100 lkekeerlaklrkelykvklerdklrkqneklkqqggll..rvPaLlkDYdktkekveekr 158
                 l+e +++l++  ++l +  l+ ++l ++   l+++  +   ++++++  Y++ +++++e  
  CCD23427.1  95 LEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWekKHEEITAKYEEAQKELDEIA 155
                 5555555444444444444444444444444443332221134445555555555555555 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  11.4    0.0052       1.3     123     185 ..       6      68 ..       1      72 [. 0.86
   2 ?    8.6  12.6     0.006       1.5      99     181 ..      76     158 ..      69     161 .] 0.90

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0052
      DUF724 123 sekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeFeava 185
                 ++ ++l+ e +  ++k  el++q +++ +++ ++++ei++l++++++le+e+e+ e+e ++++
  CCD23427.1   6 EKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETK 68 
                 4566778888899999999999999999999999999************99999999999875 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.006
      DUF724  99 slkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeF 181
                 +lk++ ++  ++ ++le+++ee +++ ++  e+++e + +  +l r+  +l e++++ +k+  ++ ++ e++++el+++  + 
  CCD23427.1  76 NLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAASL 158
                 6899999999***************9999999999999999999999999999999999999999999999999999877665 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7  20.7     0.002       0.5     108     247 ..       4     158 ..       1     161 [] 0.61

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.002
     DUF4407 108 IdaelaeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakl 206
                 I+++l+  + e+++ +++    +l+++ ++ e+++ + ++ei++++++ ++l++e++k  d  k  +t+  a + ++ k+++++ ++++++l+e  +++
  CCD23427.1   4 IREKLNNLKLEAESWQEKYE--ELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELK--ETKLLAEDSTNLKSNNENFTKKNQDLEEELEES 98 
                 55555555555544443332..388888888899999999999988888888888877666533..233444555555554444444444444444444 PP

     DUF4407 207 d...................atarlaalraelaeleaerakeraasqaaaaaddGllarl 247
                 d                    + ++ al++e+++ e++ ++++a+ ++a+++ d ++a l
  CCD23427.1  99 DaklketieklresdlnaeqLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAASL 158
                 444445555888999999996666667777777777777777777777777666666655 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  13.3    0.0006      0.15      60     122 ..       6      68 ..       2      73 .. 0.70
   2 ?    3.7   9.3      0.24        61      55     109 ..      67     121 ..      63     129 .. 0.64
   3 ?    3.6  10.0      0.25        64      49     112 ..      86     152 ..      85     161 .] 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0006
        ADIP  60 etirkleaeierlqskierlktqleqlerelalvqakerqlekklktleqklknekeelqrlk 122
                 e++++l+ e e+ q k+e lk+q +q e+e+   +++ ++l +k+++le+ + ++ +el+ +k
  CCD23427.1   6 EKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETK 68 
                 566777777777777777777777777777777777777777777777777777777776665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.24
        ADIP  55 reslnetirkleaeierlqskierlktqleqlerelalvqakerqlekklktleq 109
                  ++l+e+  +l++ +e+ ++k + l+++le+++ +l+   +k+r+   + ++l +
  CCD23427.1  67 TKLLAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESDLNAEQLGR 121
                 5666777777777777777777777777777777777666666666655555555 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.25
        ADIP  49 drdleqreslnetirkleaeierlqs...kierlktqleqlerelalvqakerqlekklktleqklk 112
                 +++++ +e+l+e   kl+ +ie+l+    + e+l +++ +le e + +++k+ ++++k++++++ l 
  CCD23427.1  86 KKNQDLEEELEESDAKLKETIEKLREsdlNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELD 152
                 5789999999999999999999997633357899999999999999999999999999999888765 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9  20.9   0.00032     0.082      12      73 ..       6      67 ..       2      68 .. 0.96
   2 ?    3.1   9.5      0.36        92      38      72 ..      77     104 ..      67     113 .. 0.53
   3 ?    4.5  12.4      0.13        34      22      74 .]      93     148 ..      93     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00032
  TMF_DNA_bd 12 eqIaqLmeEGekLskkelklnntikkLrkknkelekeikelkkkleklekeleeleerlkea 73
                e++++L+ E e ++ k  +l+++ k+  ++n e e+eik+l+ k+++le e+e+le++lke+
  CCD23427.1  6 EKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKET 67
                678999******************************************************97 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.36
  TMF_DNA_bd  38 Lrkknkelekeikelkkkleklekeleeleerlke 72 
                 L++       + ++ +kk+++le+elee  ++lke
  CCD23427.1  77 LKS-------NNENFTKKNQDLEEELEESDAKLKE 104
                 444.......4444455555555555555555554 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.13
  TMF_DNA_bd  22 ekLskkelklnntikkLrkknkele...keikelkkkleklekeleeleerlkeae 74 
                 e+L+ ++ kl++ti kLr+   ++e    ++  l+++ ++ ek+ ee++++++ea+
  CCD23427.1  93 EELEESDAKLKETIEKLRESDLNAEqlgRKVIALEEERDDWEKKHEEITAKYEEAQ 148
                 7899999***********99877776778888999999999999999999988875 PP

>> Rho_Binding  Rho Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  12.9       0.3        77       3      50 ..       6      56 ..       4      56 .. 0.75
   2 ?    2.7   7.5      0.87   2.2e+02       3      39 ..      41      77 ..      38      78 .. 0.71
   3 ?   13.1  10.2   0.00051      0.13       1      52 [.      70     119 ..      70     123 .. 0.93
   4 ?    8.3   3.0     0.016       4.2       4      37 ..     122     155 ..     119     161 .] 0.78

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.3
  Rho_Binding  3 kdvenlakekeelnkklkkleeelekake....eeeeieklkasyekqLktE 50
                 ++++nl+ e e +++k ++l+e++++ ++    +e+ei++l+ + ++qL+ E
   CCD23427.1  6 EKLNNLKLEAESWQEKYEELKEQFKQVEQenieKENEIKSLS-TKNQQLEDE 56
                 67899999*****99998888888777633555889999998.455666655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.87
  Rho_Binding  3 kdvenlakekeelnkklkkleeelekakeeeeeiekl 39
                 ++++ l++ +++l+ +++kle+el++ k  +e+ ++l
   CCD23427.1 41 NEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDSTNL 77
                 5677788888888888888888888888666666555 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 0.00051
  Rho_Binding   1 Ltkdvenlakekeelnkklkkleeelekak.eeeeeieklkasyekqLktErl 52 
                  L +d +nl++++e+++kk ++leeele+   + +e iekl+   e+ L+ E+l
   CCD23427.1  70 LAEDSTNLKSNNENFTKKNQDLEEELEESDaKLKETIEKLR---ESDLNAEQL 119
                  678999***********************9889********...*******98 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.016
  Rho_Binding   4 dvenlakekeelnkklkkleeelekakeeeeeie 37 
                  +v  l++e+++++kk++++  ++e+a++e +ei+
   CCD23427.1 122 KVIALEEERDDWEKKHEEITAKYEEAQKELDEIA 155
                  6778999*****************9995555554 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   9.3    0.0091       2.3      60     102 ..       2      44 ..       1      49 [. 0.83
   2 ?    1.8  30.8       0.9   2.3e+02       7     116 ..      40     155 ..      39     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0091
  TPR_MLP1_2  60 qalreelnelkaeiaelkaeaesakaeleeseesweeqkeele 102
                  ++re+ln+lk e+++++++ e++k+++++ e++  e+++e++
  CCD23427.1   2 DKIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIK 44 
                 5789999999999999999999999999999999888888876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.9
  TPR_MLP1_2   7 eeeikslkeekeeaeaklqklqedlekq...aeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesaka...eleeseesweeqke 99 
                 e+eiksl+++++++e++++kl+++l++    ae  ++ + + e+   k+ +  +el++  ++l+e+ ++++e   +ae++     +lee++  we++ e
  CCD23427.1  40 ENEIKSLSTKNQQLEDEVEKLEDELKETkllAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRkviALEEERDDWEKKHE 138
                 578888888888888888888888877511155556667777777777777778888888888888888888888888776522257888888888888 PP

  TPR_MLP1_2 100 elekelselekriedln 116
                 e+  + +e++k ++++ 
  CCD23427.1 139 EITAKYEEAQKELDEIA 155
                 88888888888888875 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   6.7      0.14        36      67     101 ..       4      38 ..       1      39 [. 0.79
   2 ?    9.9  17.7    0.0026      0.67      11      83 ..      40     111 ..      37     118 .. 0.93
   3 ?    3.7  15.9      0.23        60       9      95 ..      76     161 .]      75     161 .] 0.91

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.14
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Prefoldin_2  67 Leerketlekeiktlekqleklekeleelkeelqk 101
                    e++++l+ e ++ ++++e+l+++++++++e+ +
   CCD23427.1   4 IREKLNNLKLEAESWQEKYEELKEQFKQVEQENIE 38 
                  56788888899999999999999999998888765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0026
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  11 qqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlek 83 
                  +++++ l ++ +qle ++++le+ l+e +ll+ed +  k+  + + k++ ++++eeLee+ ++l++ i++l +
   CCD23427.1  40 ENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDSTNLKSNNENFTKKN-QDLEEELEESDAKLKETIEKLRE 111
                  68999****************************************9987.58******************987 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.23
                  HHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2   9 qlqqqlqqlaqqikqletqlkele.lvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleel 95 
                  +l++  +++ ++ ++le++l+e++ + +e++e+l e++   ++ G+  +   +ee +++ e+++e++++++++ +k+l+++ + le+l
   CCD23427.1  76 NLKSNNENFTKKNQDLEEELEESDaKLKETIEKLRESDLNAEQLGRKVI--ALEEERDDWEKKHEEITAKYEEAQKELDEIAASLENL 161
                  6778888999999**********8568889****************887..6999****************************99986 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.3      0.47   1.2e+02      73     103 ..       6      36 ..       3      44 .. 0.82
   2 ?    5.9   9.1      0.04        10      54     117 ..      19      84 ..      13      96 .. 0.76
   3 ?    5.4   6.4     0.057        15      47     107 ..      47     106 ..      46     115 .. 0.87
   4 ?    5.9   3.2     0.038       9.7      50     109 ..      99     157 ..      79     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.47
    Lectin_N  73 aeiqalssqggslsekvtsleaklekkqqdl 103
                  ++++l+ +++s++ek + l+ + ++ +q+ 
  CCD23427.1   6 EKLNNLKLEAESWQEKYEELKEQFKQVEQEN 36 
                 57889999999**********9999998875 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.04
    Lectin_N  54 qreLetLketfsnfss...stlaeiqalssqggslsekvtsleaklekkqqdlkadhselllhvkql 117
                 q+  e Lke+f+ + +   + + ei++ls+++++l+++v+ le +l++  + l +d+++l     ++
  CCD23427.1  19 QEKYEELKEQFKQVEQeniEKENEIKSLSTKNQQLEDEVEKLEDELKE-TKLLAEDSTNLKSNNENF 84 
                 777888999999887621246899*********************965.566788887776555555 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.057
    Lectin_N  47 gsqnsqLqreLetLketfsnfssstlaeiqalssqggslsekvtsleaklekkqqdlkadh 107
                 + +n+qL  e+e L+++++++ +    +  +l+s++++  +k + le +le+ +++lk+  
  CCD23427.1  47 STKNQQLEDEVEKLEDELKET-KLLAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETI 106
                 6799**************985.555667789*************************99865 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.038
    Lectin_N  50 nsqLqreLetLketfsnfssstlaeiqalssqggslsekvtsleaklekkqqdlkadhse 109
                  ++L++ +e L+e+  n  ++   ++ al+ + +++++k + + ak e+ q++l++  ++
  CCD23427.1  99 DAKLKETIEKLRESDLNA-EQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAAS 157
                 456777777777765553.55666788888899999999999999999999999876665 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  11.0    0.0012      0.32      66     128 ..       5      67 ..       1      74 [. 0.84
   2 ?    4.4  11.6     0.067        17      29     110 ..      72     150 ..      69     161 .] 0.50

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0012
       Atg14  66 kakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleer 128
                 ++kl++lk + ++ +e+ +elk++ +q  +e+ ek +++++ls k+ +   + e+l++el+e 
  CCD23427.1   5 REKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKET 67 
                 688899999999999999999999999999999999999999999999999999999988876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.067
       Atg14  29 erlaklksekeslkkkiekalegkeeaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdk 110
                 e+ ++lks +e + kk ++++e+ e   ++++k+k + +kl+e     ++l +++  l++ ++   k++ee  +k ++ +++
  CCD23427.1  72 EDSTNLKSNNENFTKKNQDLEEELE---ESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKE 150
                 6677888888888888887777777...445555555555555555555555553333333333333333333322222222 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   4.2      0.38        97      33      62 ..       6      35 ..       1      37 [. 0.64
   2 ?    3.6  15.8      0.27        70      25      59 ..      31      67 ..      18      82 .. 0.62
   3 ?    2.7   9.9      0.52   1.3e+02      29      60 ..      75     110 ..      65     115 .. 0.73
   4 ?    7.5   0.6     0.017       4.3      28      62 ..     116     150 ..     112     152 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.38
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 33 rrvkaLekeNksLkseleelkkevekLksk 62
                ++   L+ e +s +++ eelk++ ++ +++
  CCD23427.1  6 EKLNNLKLEAESWQEKYEELKEQFKQVEQE 35
                566666777777777777777777766665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.27
                HHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1 25 qaeieeLe..rrvkaLekeNksLkseleelkkevekL 59
                q e+e+ e  ++ k L+++N++L +e+e+l++e ++ 
  CCD23427.1 31 QVEQENIEkeNEIKSLSTKNQQLEDEVEKLEDELKET 67
                4444444311455666666666666666666665544 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHH CS
      bZIP_1  29 eeLerrvkaLekeNksLkselee....lkkevekLk 60 
                  +L++  + ++k+N++L +elee    lk+++ekL+
  CCD23427.1  75 TNLKSNNENFTKKNQDLEEELEEsdakLKETIEKLR 110
                 567778888888888888888853333677777776 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  28 ieeLerrvkaLekeNksLkseleelkkevekLksk 62 
                  e+L r+v aLe+e  +  ++ ee++ ++e+ +++
  CCD23427.1 116 AEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKE 150
                 69***********************9999976665 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  16.7      0.55   1.4e+02      28      92 ..       8      62 ..       1      72 [. 0.35
   2 ?   11.9  15.6   0.00081      0.21      10      88 ..      70     156 ..      66     160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.55
                HHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH 28 fkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellk 92
                 ++l+ e e+ ++++++l+e++         ++ eqe  +ke+e++  ++ k+q+l+++ ++l +
  CCD23427.1  8 LNNLKLEAESWQEKYEELKEQF---------KQVEQENIEKENEIKS-LSTKNQQLEDEVEKLED 62
                3333333333333333333333.........3333333333333333.33333333333332222 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00081
                 HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.........-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  10 ileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e.......keekeqelqkkeqelqqkqqqkaqelqkkqq 88 
                 + e+s+  k+ +e++ kk ++l++ele+  ++l++ +e+l ++  ++ +        ee++ + +kk +e+ +k++++++el +  +
  CCD23427.1  70 LAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESDLNAeQlgrkviaLEEERDDWEKKHEEITAKYEEAQKELDEIAA 156
                 56789999********************************97777765599888855555555999999999988888888877655 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.4      0.63   1.6e+02      20      48 ..      11      35 ..       2      76 .. 0.50
   2 ?    7.0   0.3     0.032       8.1      31      67 ..      77     113 ..      66     114 .. 0.75
   3 ?    2.0   0.1       1.2   3.1e+02      30      49 ..     139     158 ..     118     161 .] 0.60

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.63
                HHHHHHHHHHHTTT-HHHHHHHHHHHHHH CS
     HisKA_3 20 iklqlelakrllekdpekaaeqlreieel 48
                +kl +e  ++++e    +++eq++++e+ 
  CCD23427.1 11 LKLEAESWQEKYE----ELKEQFKQVEQE 35
                5555555554443....334444444433 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.032
                 TTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH CS
     HisKA_3  31 lekdpekaaeqlreieelarealqevRrllhnLrpaa 67 
                 l++++e   ++ +++ee ++e+ + +++++++Lr+++
  CCD23427.1  77 LKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESD 113
                 5667777777888888888888888888888888766 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 1.2
                 HTTT-HHHHHHHHHHHHHHH CS
     HisKA_3  30 llekdpekaaeqlreieela 49 
                 +++++ e+a+++l+ei++ +
  CCD23427.1 139 EITAKYEEAQKELDEIAASL 158
                 33334446666666665554 PP

>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.8     0.043        11      53      91 ..       2      40 ..       1      41 [. 0.91
   2 ?    6.4  17.4     0.034       8.6       7      75 ..      41     111 ..      36     117 .. 0.79
   3 ?    6.7   1.5     0.028       7.2      38      76 ..     123     161 .]     117     161 .] 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.043
                HHHHHHHTTHCHCCCHCTSSSSHHHHCTTTXXXXXXXXX CS
       Sec2p 53 eklkeqLkeketlleslqeqLkeLkevlekmeeeseeqe 91
                +k++e+L++ +   es qe+ +eLke ++++e+e+ e+e
  CCD23427.1  2 DKIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKE 40
                7899*****************************987765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.034
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHHTTHCHCCCHCTSSSSH CS
       Sec2p   7 kkreeaekekkklekEledLtasLFeeANkmVaaar....kekealekkneklkeqLkeketlleslqeqLke 75 
                 ++ ++  +++++le E+e L  +L e   k+ a+ +     ++e+++kkn+ l+e+L+e+++ l++  e+L+e
  CCD23427.1  41 NEIKSLSTKNQQLEDEVEKLEDELKET--KLLAEDStnlkSNNENFTKKNQDLEEELEESDAKLKETIEKLRE 111
                 555667778888888888888888664..55555555555899***********************9999986 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHHHHHHHHHHHHTTHCHCCCHCTSSSSHH CS
       Sec2p  38 VaaarkekealekkneklkeqLkeketlleslqeqLkeL 76 
                 V+a ++e+++ ekk+e+++++ +e+++ l++  + L++L
  CCD23427.1 123 VIALEEERDDWEKKHEEITAKYEEAQKELDEIAASLENL 161
                 777788999999999999999999999999988888887 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  11.9     0.021       5.4      96     158 ..      22      87 ..       6      90 .. 0.85
   2 ?    7.8   2.5    0.0088       2.2     111     158 ..      89     136 ..      84     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.021
  Fzo_mitofusin  96 qqelsstfarlcqqvdeteke...leeeikelekeiekleevqkkakllrnkaslleseLekfeeq 158
                     +el++ f++++q+  e e+e   l+++ ++le e+ekle+  k+ kll +  ++l+s+ e+f+++
     CCD23427.1  22 YEELKEQFKQVEQENIEKENEiksLSTKNQQLEDEVEKLEDELKETKLLAEDSTNLKSNNENFTKK 87 
                    5699999*9999988777766222678999*********************************985 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0088
  Fzo_mitofusin 111 detekeleeeikelekeiekleevqkkakllrnkaslleseLekfeeq 158
                    +  e+elee+ ++l+++iekl e   +a++l  k   le+e ++ e++
     CCD23427.1  89 QDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKK 136
                    56789999999****************************999888775 PP

>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  15.8     0.072        18       6      66 ..       6      67 ..       1      74 [. 0.65
   2 ?    3.6  18.4      0.25        64      25      80 ..      64     119 ..      62     161 .] 0.71

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.072
       Mod_r  6 eeLqelledeeklealvktl.pevkqlkeekeellaeneslaeknlslepeleelrselqek 66
                e+L+ l  + e  ++ +++l +++kq+++e  e ++e++sl  kn +le+e+e+l +el+e+
  CCD23427.1  6 EKLNNLKLEAESWQEKYEELkEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKET 67
                55555555555566666666666777777777777777777777777777777777777765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.25
       Mod_r  25 lpevkqlkeekeellaeneslaeknlslepeleelrselqekleelkelekefeek 80 
                 l+e+k l e+ ++l   ne++ +kn +le+elee  ++l+e++e+l+e   + e++
  CCD23427.1  64 LKETKLLAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESDLNAEQL 119
                 67888899999999999999999999999999999999999999966544333333 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.0      0.01       2.7     101     170 ..       3      72 ..       1      76 [. 0.94
   2 ?    6.7   6.6      0.02       5.2      69     136 ..      86     153 ..      78     160 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.01
      DUF745 101 qaqqqlealkallkaakenlenaeqvaagaqqelaektqlleaAkkRveeLkkqlkearkdlektkkaAy 170
                 +++++l+ lk   ++++e++e++++  ++++qe  ek++ +++  ++ ++L+ ++++  ++l++tk  A+
  CCD23427.1   3 KIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAE 72 
                 67889999**********************************************************8886 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.02
      DUF745  69 qelreaeavvqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenaeqvaagaqqelae 136
                 ++ ++ e+ ++e  ++l+++ ++++     a+q  +++ al++  + ++++ e++++  ++aq+el+e
  CCD23427.1  86 KKNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDE 153
                 55566666666666666666666666666666677777777777777777777777777777777766 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3  26.6       1.5   3.9e+02       6     100 ..       3     105 ..       1     111 [. 0.74
   2 ?    8.0   2.4     0.012       3.2      30     104 ..     122     158 ..     111     161 .] 0.48

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 1.5
                   HHHH...-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT.......S-TCCCCCCCHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   6 lire...npeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkk.......edaeeliaevkelkeelkaleaelke 92 
                    ire   n+++ +e+++++  ++++ +++ +++++  e ++e+ +l ++  +l  e++k+ ++        ed + l+   ++  ++ ++le+el+e
    CCD23427.1   3 KIREklnNLKLEAESWQEK--YEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELketkllaEDSTNLKSNNENFTKKNQDLEEELEE 97 
                   5777666888888888877..6889999999999999999999999999999999999988887444566666666666666666777777777777 PP

                   HHHHHHHH CS
  Seryl_tRNA_N  93 leaelekl 100
                    +a+l++ 
    CCD23427.1  98 SDAKLKET 105
                   77776665 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.012
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCTS CS
  Seryl_tRNA_N  30 elleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkeleaeleklllai 104
                   ++++l+e+r  +                                       ++ ++++a+ +e+++el+++++++
    CCD23427.1 122 KVIALEEERDDW--------------------------------------EKKHEEITAKYEEAQKELDEIAASL 158
                   344444444444......................................4444444444444444444444444 PP

>> DUF4107  Protein of unknown function (DUF4107)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.3    0.0098       2.5      44      87 ..      63     106 ..      35     124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0098
     DUF4107  44 lkklsnlvadesenllGdddeiaknlkdfsdqlkGeklnlnrvv 87 
                   k + l a++s nl  ++++++k+ +d++++l+    +l +  
  CCD23427.1  63 ELKETKLLAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETI 106
                 3477899**************************99888887543 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  18.0    0.0064       1.6      42     107 ..       3      68 ..       1      72 [. 0.91
   2 ?    4.4  19.0      0.18        46      28     105 ..      76     153 ..      68     161 .] 0.58

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0064
     DUF4200  42 eleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleeyk 107
                 +++e+l++++   ++ ++k ++  ++ ++ ++++ eke+eik l ++ ++l+ e ekle++l+e k
  CCD23427.1   3 KIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETK 68 
                 688889999999999999999*****************************************9987 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.18
     DUF4200  28 alkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleeklee 105
                 +lk+  e++ kk+q lee+l++ d  lke  +k ++   +ae+  ++    e+e  + +++ e++ ++ e+ +++l+e
  CCD23427.1  76 NLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDE 153
                 455566666666666666666666666666666666666666666666666666666666666666666665555554 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6  16.3    0.0036      0.93      38     102 ..       8      72 ..       2      76 .. 0.90
   2 ?    3.2  16.2      0.34        86      36     103 ..      86     153 ..      72     160 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0036
       DHR10  38 ciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqae 102
                 + +l  e+e+ ++k+ee k++ k+ +++  eke+e + l++k ++l+  +e+ e++l   +  ae
  CCD23427.1   8 LNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAE 72 
                 55666789999**********************************************98876666 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.34
       DHR10  36 rsciklleeieaelakleeakkklkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaee 103
                 ++  +l ee+e+  akl+e+ +kl e   + e++++++  le +++ ++++ e  + k+e ++++ +e
  CCD23427.1  86 KKNQDLEEELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDE 153
                 56667889999999999999999999999999999999999999999999999999999999998776 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.6    0.0043       1.1       9      47 ..       4      42 ..       2      44 .. 0.90
   2 ?    6.0   8.0     0.055        14      15      56 ..      38      78 ..      35      80 .. 0.80
   3 ?    5.4   7.1      0.08        21      10      48 ..      71     109 ..      69     123 .. 0.58
   4 ?    5.0   2.2      0.11        29       4      41 ..     121     158 ..     115     161 .] 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0043
       Spc24  9 iakelsdleselesleselaelkeeleeleeeseekese 47
                i ++l++l+ e+es +++ +elke+++++e+e+ eke+e
  CCD23427.1  4 IREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENE 42
                77899****************************997765 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.055
       Spc24 15 dleselesleselaelkeeleeleeeseekeservedetllk 56
                + e+e++sl+++ ++l++e+e+le+e +e ++ ++ed+t lk
  CCD23427.1 38 EKENEIKSLSTKNQQLEDEVEKLEDELKE-TKLLAEDSTNLK 78
                56999********************9999.444456777665 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.08
       Spc24  10 akelsdleselesleselaelkeeleeleeeseekeser 48 
                 a+++++l+s+ e+ +++ ++l+eelee + + +e  +++
  CCD23427.1  71 AEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKL 109
                 556666666666666666666666666666666622222 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.11
       Spc24   4 nekfriakelsdleselesleselaelkeeleeleees 41 
                 ++ +++ +e +d e++ e+++++ +e ++el+e+  + 
  CCD23427.1 121 RKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAASL 158
                 55667777788888888888888888888888876655 PP

>> PRKG1_interact  cGMP-dependent protein kinase interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  18.9     0.005       1.3      10      92 ..       5      83 ..       1      86 [. 0.71
   2 ?    5.3  11.3      0.15        38      10      84 ..      85     159 ..      82     161 .] 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.005
  PRKG1_interact 10 keenerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkiseleeelkeleeLraenqrLkdEngA 92
                    +e+ ++Lk e e+ +++ +elk+++++++   qe+++k++++ +l+  ++++le ++ +le+elke++ L +++  Lk  n+ 
      CCD23427.1  5 REKLNNLKLEAESWQEKYEELKEQFKQVE---QENIEKENEIKSLST-KNQQLEDEVEKLEDELKETKLLAEDSTNLKSNNEN 83
                    44455566666666666666666666655...456777777777665.5678999***********************99975 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.15
  PRKG1_interact  10 keenerLkreLeelekelselkseleklkqqrqesvskrssllelekrerrslerkis.eleeelkeleeLraenq 84 
                      ++n+ L +eLee++ +l+e+ ++l +++ +  e++ ++   le e+ + +++ ++i+ ++ee +kel+e+ a+ +
      CCD23427.1  85 TKKNQDLEEELEESDAKLKETIEKLRESDLN-AEQLGRKVIALEEERDDWEKKHEEITaKYEEAQKELDEIAASLE 159
                     6899***********9999999999988755.56666666666666665555544444378999999999887655 PP

>> FAM184  Family with sequence similarity 184, A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  24.9     0.039        10      95     197 ..       5     108 ..       2     113 .. 0.74
   2 ?    5.5  15.7     0.049        13     127     204 ..      70     153 ..      63     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.039
      FAM184  95 sqkvvelsreveevkrkFeeklrqfaqlqeq.leqeke.kaLeelrkkhreeveeLlkeqeaqsekllkeqekleekhkaeveklkeeveelekekkkl 191
                 ++k+ +l+ e e  ++k+ee  +qf+q++++ +e+e e k+L++ +++ ++eve+L++e ++ ++ l+++  +l+++ ++ ++k ++  eele+  +kl
  CCD23427.1   5 REKLNNLKLEAESWQEKYEELKEQFKQVEQEnIEKENEiKSLSTKNQQLEDEVEKLEDELKE-TKLLAEDSTNLKSNNENFTKKNQDLEEELEESDAKL 102
                 68999999999999999999999999987651455544256888888888899999888765.445666677777777777777776668888888888 PP

      FAM184 192 veeyEe 197
                  e+ E+
  CCD23427.1 103 KETIEK 108
                 888876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.049
      FAM184 127 eqekekaLeelrkkhreeveeLlkeqeaqsekllkeqekl......eekhkaeveklkeeveelekekkklveeyEeklakqka 204
                  +e +++L++ ++++++  ++L++e e+  +kl++  ekl      +e++  +v +l+ee +++ek+++++++ yEe+ +++++
  CCD23427.1  70 LAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLresdlnAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDE 153
                 467778888888888888888888888888888888888877777777777888888888888888888888888887666554 PP

>> IFT57  Intra-flagellar transport protein 57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  18.9    0.0046       1.2     258     348 ..       1      91 [.       1      96 [. 0.89
   2 ?    3.0  10.2      0.16        40     229     316 ..      77     160 ..      70     161 .] 0.69

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0046
       IFT57 258 lekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelekvkqemeergssmtDgsplvkikkaltklkkEi 348
                 ++ki ++ ++l  + e+  ++y+e++e++++v+++  + ++++++l+++ +++++e+ek++ e++e +  + D+++l +  +++tk ++++
  CCD23427.1   1 MDKIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDSTNLKSNNENFTKKNQDL 91 
                 577777777888888888889******************************************************9999999988877776 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.16
       IFT57 229 mkkhkksieeslpetksqlkklhedisktlekiesrEkylnsqleellqeyreaqeelsevkekykqlsegvseltrelaeiseelek 316
                 +k+++++++++ ++++++l++   ++++t+ek+  rE+ ln   e+l ++  +++ee ++ ++k ++++++ +e ++el+ei   le+
  CCD23427.1  77 LKSNNENFTKKNQDLEEELEESDAKLKETIEKL--RESDLNA--EQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAASLEN 160
                 566777888888888888888888888888876..6777764..45555555566666666777777777777777777777777765 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  13.5    0.0024      0.61     130     186 ..       3      58 ..       1      59 [. 0.88
   2 ?    2.4  18.0      0.52   1.3e+02     116     186 ..      38     107 ..      37     119 .. 0.69
   3 ?    7.3   4.9     0.016       4.1     116     160 ..     111     155 ..     106     161 .] 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0024
  Ax_dynein_light 130 eLeeekeelekqvaelkaklealekrekerrqeeekkheeeieflkksnqqlkeqle 186
                      +++e+ ++l+ + +++++k+e+l++++k+  ++e+ ++e+ei+ l  +nqql++++e
       CCD23427.1   3 KIREKLNNLKLEAESWQEKYEELKEQFKQ-VEQENIEKENEIKSLSTKNQQLEDEVE 58 
                      678999******************99986.5667788899*************9987 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.52
  Ax_dynein_light 116 qaeqgkselekkikeLeeekeelekqvaelkaklealekrekerrqeeekkheeeieflkksnqqlkeqle 186
                      ++e++ + l+ k ++Le+e+e+le++++e+k  +e++  + k ++++ +kk+++  e l++s  +lke +e
       CCD23427.1  38 EKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDST-NLKSNNENFTKKNQDLEEELEESDAKLKETIE 107
                      67888899999999999999999999999887766654.33444444444455555555566666655554 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.016
  Ax_dynein_light 116 qaeqgkselekkikeLeeekeelekqvaelkaklealekrekerr 160
                      +++ + ++l +k+ +Leee+++ ek+ +e++ak+e+++k+  e  
       CCD23427.1 111 ESDLNAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIA 155
                      455666778888889999999999999999999999998877655 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  28.2     0.053        14      53     142 ..      16     104 ..       4     114 .. 0.86
   2 ?    6.9   4.1     0.014       3.7     105     144 ..     116     155 ..     106     160 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.053
     DUF3552  53 ealleakeeihklreelekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeeleelveeqrqeLer 142
                 e   e  ee++++ +++e+e  e++ne+++l ++ +q e+++++ e++l++  + l e   +lk+++++ ++k+++lee +ee +++L++
  CCD23427.1  16 ESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKET-KLLAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKE 104
                 4456778999999999*******************************99765.678899999***********************99965 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.014
     DUF3552 105 eesleekekelkqkeqsleekeeeleelveeqrqeLeris 144
                  e+l +k   l++++++ e+k+ee+++ +ee ++eL +i+
  CCD23427.1 116 AEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIA 155
                 5678888888999999999999999999999999999998 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  12.6     0.014       3.5       8      77 ..       8      66 ..       1      78 [. 0.49

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.014
      CENP-H  8 rdelssellklsqelrelqeeltevekenlrlkrknrelaaellelakekesekeklkeelekleaelkk 77
                 ++l +e++ ++++++el+e+  +ve+en++ +++ ++l ++ ++l+ e e+ +            elk+
  CCD23427.1  8 LNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLE-----------DELKE 66
                344445555555555555555555555555555555555555544444444444...........33333 PP

>> HMMR_C  Hyaluronan mediated motility receptor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  19.8      0.57   1.5e+02      16     116 ..       6     111 ..       2     123 .. 0.69
   2 ?    9.3   2.5    0.0049       1.2      13      52 ..     118     157 ..     108     161 .] 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.57
      HMMR_C  16 etldelkeevkkWrklyeellnkvkPfqeqldafeaeknallnekGaaqeelnklsday..akllGhq..nqkqkikhvvklkee.nselkqevsklrs 109
                 e+l++lk e++ W++ yeel +++k  ++     e e ++l   +    +e++kl d    +kll     n k       k  ++ ++el +  +kl+ 
  CCD23427.1   6 EKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELkeTKLLAEDstNLKSNNENFTKKNQDlEEELEESDAKLKE 104
                 56788999******************988888889999*******************763379998762244444444443222213334444444544 PP

      HMMR_C 110 qlakekq 116
                  + k ++
  CCD23427.1 105 TIEKLRE 111
                 4444433 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0049
      HMMR_C  13 ekeetldelkeevkkWrklyeellnkvkPfqeqldafeae 52 
                 +  +++  l+ee + W k +ee+++k    q+ ld  +a 
  CCD23427.1 118 QLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDEIAAS 157
                 4556778899*************************99986 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  27.8      0.01       2.6      12     141 ..       1     132 [.       1     136 [. 0.94
   2 ?    2.4   0.2      0.41     1e+02      82     106 ..     136     160 ..     132     161 .] 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.01
  PI3K_P85_iSH2  12 leklseklrevskqlqekskeydqlkeeynkiseeiqlkrqaleaFneaikmFeeqiklqekfskeaq..ehEieklqenleqlksrlkelhsske 105
                    ++k+ ekl++++ + +  +++y++lke+++++++e  +k   ++  +  ++ +e++++  e   ke +   ++  +l++n+e+ +++ + l+++ e
     CCD23427.1   1 MDKIREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKllAEDSTNLKSNNENFTKKNQDLEEELE 96 
                    68999****************************************************998888888855488888********************* PP

  PI3K_P85_iSH2 106 kLeedlkqqkeeereleReinalkpellqLqkrkdk 141
                    + + +lk+++e+ re + +  +l   ++ L+ ++d 
     CCD23427.1  97 ESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDD 132
                    *******************************99996 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.41
  PI3K_P85_iSH2  82 Eieklqenleqlksrlkelhsskek 106
                      e+++  +e++++ l+e+ +s e+
     CCD23427.1 136 KHEEITAKYEEAQKELDEIAASLEN 160
                    4556777777777777777666555 PP

>> YtxH  YtxH-like protein
   [No individual domains that satisfy reporting thresholds (although complete target did)]

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.4      0.42   1.1e+02       2      36 ..       1      35 [.       1      37 [. 0.84
   2 ?   10.0   0.8    0.0033      0.86       7      34 ..      41      68 ..      38      74 .. 0.77
   3 ?    1.8   1.9       1.3   3.2e+02      11      38 ..     118     148 ..      70     157 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.42
         LPP  2 ldeLssqVsqLkskvdqlssdvnsakaaaqaakeE 36
                +d++ + +++Lk + ++ +++ +++k++ +++ +E
  CCD23427.1  1 MDKIREKLNNLKLEAESWQEKYEELKEQFKQVEQE 35
                78888889999999999999999999999888877 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0033
         LPP  7 sqVsqLkskvdqlssdvnsakaaaqaak 34
                +++++L++k +ql+++v++++++++++k
  CCD23427.1 41 NEIKSLSTKNQQLEDEVEKLEDELKETK 68
                6788888888888888888888877765 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 1.3
         LPP  11 qLkskvdqlssd...vnsakaaaqaakeEAa 38 
                 qL +kv +l+++    ++ ++++ a +eEA+
  CCD23427.1 118 QLGRKVIALEEErddWEKKHEEITAKYEEAQ 148
                 5666666666553334444444555555553 PP

>> Lebercilin  Ciliary protein causing Leber congenital amaurosis disease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  37.9      0.11        29      11     155 ..       6     152 ..       1     161 [] 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.11
  Lebercilin  11 lkikeLqnelaelqskleelrkEnklLkrlqkrqekaLskyedteaeLpqllarhneEvrvlr...erlRksqekerelekklkekeaellrlkdklkk 106
                 +k+++L+ e++  q+k+eel++  k +++ +   e++++ +  ++++L + +++ ++E++ ++   e+  +++ ++++  kk ++ e+el++ + klk+
  CCD23427.1   6 EKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKllaEDSTNLKSNNENFTKKNQDLEEELEESDAKLKE 104
                 689999999999999999999999999999999999999999999999999999988876544222888899999999999999999999999999999 PP

  Lebercilin 107 lkkLsedknLaereeLqkkLeeleakleekeekikeLerkleleeksfr 155
                   +  ++ +L   e+L +k+ +le++ ++ e+k +e   k e ++k+ +
  CCD23427.1 105 TIEKLRESDL-NAEQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELD 152
                 9998889999.88999999999999999999999999999998888765 PP

>> KASH_CCD  Coiled-coil region of CCDC155 or KASH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  21.9      0.02       5.2      65     140 ..       4      82 ..       1      86 [. 0.86
   2 ?    3.5  17.2      0.22        55      12     122 ..      76     148 ..      66     161 .] 0.61

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.02
    KASH_CCD  65 leeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqeenikllaekdelkkklke...LlkekaeLkkqlh 140
                 + e l++lk  +++ +Ek ++lk q kq+e+en   + +i+sL  +n++l  e ++l+  lke   L++   +Lk+++ 
  CCD23427.1   4 IREKLNNLKLEAESWQEKYEELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKEtklLAEDSTNLKSNNE 82 
                 678999************************************************9999888775546677777887765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.22
    KASH_CCD  12 dLqlnNkkLaeenskLkkavetaeetnakLteeieeLkkklkstQqalqkaklleeEleelkalvkeleEkrarlkaqnkqlekenqsLiakiesLqee 110
                 +L+ nN    ++n+ L +     ee++akL e ie+L++      q+  k  +leeE ++  +  +                                 
  CCD23427.1  76 NLKSNNENFTKKNQDLEE---ELEESDAKLKETIEKLRESDLNAEQLGRKVIALEEERDDWEKKHE--------------------------------- 138
                 577777777777777774...456777888888888888877777888888888888887654322................................. PP

    KASH_CCD 111 nikllaekdelk 122
                    ++a  +e +
  CCD23427.1 139 --EITAKYEEAQ 148
                 ..2222222222 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       7.4   1.9e+03      84      99 ..       3      18 ..       1      20 [. 0.69

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 7.4
  Occludin_ELL 84 yLkekLshiKklikey 99
                  +++ekL+ +K   +++
    CCD23427.1  3 KIREKLNNLKLEAESW 18
                  6788888888766666 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   3.9      0.16        40      65     102 ..       6      42 ..       1      44 [. 0.77
   2 ?    7.8  13.1     0.018       4.7      32      98 ..      39     108 ..      34     112 .. 0.82
   3 ?    5.4   3.7     0.098        25      21      68 ..     111     159 ..     107     161 .] 0.85

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.16
                 HHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  65 eklldeghsaseeieerleelnerWeeLkelaaerkqk 102
                 ekl ++ + ++e  +e+ eel e+++++++   e++++
  CCD23427.1   6 EKL-NNLKLEAESWQEKYEELKEQFKQVEQENIEKENE 42 
                 555.4446788999999999999999999988888776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.018
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  32 dleevqallkkhkaleaelaaqqervkaln...elaeklldeghsaseeieerleelnerWeeLkelaae 98 
                 + +e+++l +k ++le+e++  ++++k+ +   e +++l ++++  +++ ++  eel+e  ++Lke++++
  CCD23427.1  39 KENEIKSLSTKNQQLEDEVEKLEDELKETKllaEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEK 108
                 5679999999999999999999999999997778888888888888888888888888888888888775 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.098
                 HHHHCCSSCSSSHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHH CS
    Spectrin  21 eellssedlgkdleevqallkkhkaleaelaa.qqervkalnelaekll 68 
                 e +l+ e+lg+++ ++++  ++ +  ++e++a ++e  k+l+e+a +l+
  CCD23427.1 111 ESDLNAEQLGRKVIALEEERDDWEKKHEEITAkYEEAQKELDEIAASLE 159
                 6788999999999999999999999999999989999999999988875 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   4.6       2.8   7.1e+02       2      26 ..      43      67 ..      38      69 .. 0.76
   2 ?    8.5   5.4     0.011       2.8       4      43 ..      69     108 ..      67     113 .. 0.88
   3 ?   12.2   2.7   0.00072      0.18       4      39 ..     118     153 ..     115     158 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 2.8
        KELK  2 lkeLekqlrllkqEkeelqkelaea 26
                +k+L  + ++l+ E e+l+ el+e+
  CCD23427.1 43 IKSLSTKNQQLEDEVEKLEDELKET 67
                6788888888888888888887775 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.011
        KELK   4 eLekqlrllkqEkeelqkelaeaqErlksqkkeLkdaisq 43 
                  L +    lk++ e+++k+ ++++E l +++  Lk++i++
  CCD23427.1  69 LLAEDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEK 108
                 5777888999**************************9987 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00072
        KELK   4 eLekqlrllkqEkeelqkelaeaqErlksqkkeLkd 39 
                 +L +++ +l++E+++ +k+++e+  ++ + +keL +
  CCD23427.1 118 QLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDE 153
                 6889999***************************87 PP

>> SOGA  Protein SOGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0  10.3       3.7   9.6e+02       3      43 ..      23      63 ..       2      68 .. 0.62
   2 ?    6.9  23.2     0.052        13       3      91 ..      23     129 ..      21     132 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 3.7
        SOGA  3 aeLrrhLqfveeEaeLlrrslseleeenkqlteeLnkyksk 43
                +eL+++ + ve E     +++  l  +n+ql+ e++k+  +
  CCD23427.1 23 EELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDE 63
                46666666666666666666666666666666666666554 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.052
        SOGA   3 aeLrrhLqfveeEaeLlrrslseleeenkqlteeLnkyksklgeeessleeee..................eassdsskeaelkeeLklarlqineLsg 83 
                 +eL+++ + ve E     +++  l  +n+ql+ e++k+  +l+e++  +e++                   e +++ +k +e+ e+L+ + l++++L++
  CCD23427.1  23 EELKEQFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAEDSTnlksnnenftkknqdleeELEESDAKLKETIEKLRESDLNAEQLGR 121
                 6888888888887766666666666666666666666666666666555554466666679****999987555556677888899************* PP

        SOGA  84 kvvkLqve 91 
                 kv+ L+ e
  CCD23427.1 122 KVIALEEE 129
                 *****988 PP

>> Med30  Mediator complex subunit 30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   9.3       0.3        76      53     135 ..       7      61 ..       1      69 [. 0.45
   2 ?    6.8   9.6     0.029       7.3      34     120 ..      72     158 ..      63     161 .] 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.3
       Med30  53 qlrqlkvlfkkLrliYekckencqgleevpiesLipyvdeekskreerkkseevkqlkeerkelleklkeknkqLkeimdqlr 135
                 +l++lk+  +  +  Ye++ke+ +++e+ +                             e+++ ++ l++kn+qL++ +++l 
  CCD23427.1   7 KLNNLKLEAESWQEKYEELKEQFKQVEQEN----------------------------IEKENEIKSLSTKNQQLEDEVEKLE 61 
                 555555555555555555555554444222............................2233334455555555554444443 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.029
       Med30  34 ngrtqskhqaqdrkkklqeqlrqlkvlfkkLrliYekckencqgleevpiesLipyvdee.kskreerkkseevkqlkeerkellekl 120
                 +++t+ k+++++ +kk q+  ++l++  +kL+ + ek++e+  + e++   + i +++e  ++++++++ + +++++++e +e+   l
  CCD23427.1  72 EDSTNLKSNNENFTKKNQDLEEELEESDAKLKETIEKLRESDLNAEQLG-RKVIALEEERdDWEKKHEEITAKYEEAQKELDEIAASL 158
                 4455566777777899999999******************988888777.999999999999999999999********999998766 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  17.9     0.029       7.3       9      72 ..       1      63 [.       1      76 [. 0.79
   2 ?    3.6  11.5      0.29        74      27      71 ..      54     100 ..      53     114 .. 0.51
   3 ?    2.0   5.5      0.91   2.3e+02      26      60 ..     102     152 ..     100     161 .] 0.50

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.029
      Cnn_1N  9 idkLkKENFdLKLriyfLeerleklseeqkeellkenielkveveslqkelkekkkllreaeka 72
                +dk++    +LKL+    +e+ e+l+e q +++++enie + e++sl  ++++++++++++e +
  CCD23427.1  1 MDKIREKLNNLKLEAESWQEKYEELKE-QFKQVEQENIEKENEIKSLSTKNQQLEDEVEKLEDE 63
                6778888889*****999999999998.777788888888888888888888888877777764 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.29
      Cnn_1N  27 eerleklse..eqkeellkenielkveveslqkelkekkkllreaek 71 
                 e+++ekl++  ++ + l +  ++lk ++e+ +k+++ ++++l+e+  
  CCD23427.1  54 EDEVEKLEDelKETKLLAEDSTNLKSNNENFTKKNQDLEEELEESDA 100
                 56666666655344444444555555555555555555555554433 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.91
      Cnn_1N  26 Leerleklse................eqkeellkenielkveveslqkelk 60 
                 L+e +ekl+e                e++++ +k+  e+  + e+ qkel+
  CCD23427.1 102 LKETIEKLREsdlnaeqlgrkvialeEERDDWEKKHEEITAKYEEAQKELD 152
                 555666666655222233334444445555555555555555555555555 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  16.7     0.015       3.8     334     410 ..       3      73 ..       1      82 [. 0.84
   2 ?    3.2  12.8       0.1        27     331     410 ..      80     153 ..      67     161 .] 0.41

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.015
        FapA 334 elkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeles 410
                 +++ekl++l+ e e+ +e+ e+lk+++k+++++++      ek++++k+l ++ ++l++e+e+le+elke k   e+
  CCD23427.1   3 KIREKLNNLKLEAESWQEKYEELKEQFKQVEQENI------EKENEIKSLSTKNQQLEDEVEKLEDELKETKLLAED 73 
                 67899999999999999999999999999999655......4569***********************988765555 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.1
        FapA 331 depelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeles 410
                 ++ ++ +k ++leeelee      klk++i+kl+++  +    ++   ++  l+e++   +++ ee++++++e ++el++
  CCD23427.1  80 NNENFTKKNQDLEEELEES---DAKLKETIEKLRESDLNA---EQLGRKVIALEEERDDWEKKHEEITAKYEEAQKELDE 153
                 3334444444444444444...333333344444422222...2223344444444444444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4389  (0.244799); expected 358.6 (0.02)
Passed bias filter:                      995  (0.0554967); expected 358.6 (0.02)
Passed Vit filter:                       306  (0.0170673); expected 17.9 (0.001)
Passed Fwd filter:                       158  (0.00881254); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              70  [number of targets reported over threshold]
# CPU time: 1.70u 0.36s 00:00:02.06 Elapsed: 00:00:00.55
# Mc/sec: 876.50
//
Query:       CCD23428.1  [L=282]
Description: hypothetical protein NDAI_0B03940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-15   57.5   2.0    1.8e-15   57.1   2.0    1.2  1  HORMA        HORMA domain
  ------ inclusion threshold ------
      0.075   12.9   0.4       0.14   12.0   0.4    1.5  1  T6PP_N       Trehalose-6-phosphate phosphatase N-terminal hel
        2.2    8.7   4.3         28    5.2   0.0    3.3  3  Gallidermin  Gallidermin


Domain annotation for each model (and alignments):
>> HORMA  HORMA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   2.0   3.1e-19   1.8e-15       3     171 ..       7     160 ..       5     197 .. 0.85

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 3.1e-19
       HORMA   3 elvkellaasissilylRglfpedaFedrklsglklkiLlrgsseeadrlldwLekGvfdaLe.kkyLealiltIykdkdepenvlEsYtFsfkytksg 100
                 +++k++l+  i+ ily R+++p++ F+ + ++ ++l + ++ +     +l +++e+ + d L+  +++ +++l+I+++ +e   ++E+Y ++f  +k+ 
  CCD23428.1   7 KWLKIYLKSYINLILYYRNVYPSTTFDFTTYQTFNLPQFTPIN--RHPQLQSYIEELILDLLSkLNHIYHISLCIINKSNEI--CVEKYVLDFGEFKHI 101
                 7889****************************99*****9999..5889*************857***********999986..9***********977 PP

       HORMA 101 gkedvssskletkkknleslsldekeeekkktekevkkelealirrlitltqsLpplpekryltmkLlytd 171
                 +++++++++             d++e+++  +e+ev +e+++ + +li+  ++Lp+++ ++++t++++ ++
  CCD23428.1 102 TTTTNNARDDG-----------DDDEDNQILSESEVFDEFRSSLNSLISHLEKLPKIK-DNMVTFQIVINA 160
                 77333333322...........233667778999***********************9.6999*9999886 PP

>> T6PP_N  Trehalose-6-phosphate phosphatase N-terminal helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   2.4e-05      0.14      21      89 ..     118     200 ..      95     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.4e-05
      T6PP_N  21 ervLkgieirehfvesLknakesLeadcetgtevlelrtt..............eeekvrldikdEieeLekDlkFLefiqsd 89 
                 +++L++ e+ ++f  sL++  + Le+  + + +++++++               + ++ +++ ++E+ ++++D+++ ++ +++
  CCD23428.1 118 NQILSESEVFDEFRSSLNSLISHLEKLPKIKDNMVTFQIVinavelqlghhphySLNHESINNENELLQFDRDVNWVKCKEDE 200
                 68***********************8666566666665556666********998888899**************99976665 PP

>> Gallidermin  Gallidermin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3      0.13   7.6e+02      15      34 ..     104     123 ..      99     125 .. 0.80
   2 ?    4.3   0.2    0.0085        51       2      26 ..     176     200 ..     175     204 .. 0.85
   3 ?    5.2   0.0    0.0047        28       5      36 ..     197     228 ..     193     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.13
                  XXXXXXXXXXXXXXXXXXXX CS
  Gallidermin  15 vkvnakesndsgaepRiaSk 34 
                  ++ na+   d++ +  i S 
   CCD23428.1 104 TTNNARDDGDDDEDNQILSE 123
                  67888888899999888775 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0085
                  XXXXXXXXXXXXXXXXXXXXXXXXX CS
  Gallidermin   2 EavkekndLFalDvkvnakesndsg 26 
                  E+++++n+L ++D  vn  +  +++
   CCD23428.1 176 ESINNENELLQFDRDVNWVKCKEDE 200
                  88999***********988877775 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0047
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Gallidermin   5 kekndLFalDvkvnakesndsgaepRiaSkfl 36 
                  ke ++L ++D + +  + n +  +pRi+  +l
   CCD23428.1 197 KEDENLPKYDYTTTRNNNNHELNQPRIKMSSL 228
                  78899*******9999999999******8887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       656  (0.0365888); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2083.42
//
Query:       CCD23429.1  [L=865]
Description: hypothetical protein NDAI_0B03950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-16   59.2   1.6    1.8e-16   59.2   1.6    3.0  2  SKG6            Transmembrane alpha-helix domain
    1.9e-10   40.7  16.6    3.9e-06   27.0   0.2    5.3  5  He_PIG          Putative Ig domain
    2.4e-06   27.7   0.7    4.6e-06   26.8   0.7    1.4  1  RIFIN           Rifin
    8.9e-06   26.2   0.9    2.5e-05   24.8   0.9    1.7  1  DUF1180         Protein of unknown function (DUF1180)
    0.00098   18.8   1.9    0.00098   18.8   1.9    1.8  2  Stevor          Subtelomeric Variable Open Reading frame
     0.0016   18.2   0.2     0.0032   17.2   0.2    1.5  1  Adeno_E3_CR2    Adenovirus E3 region protein CR2
  ------ inclusion threshold ------
      0.027   14.5   2.0      0.083   12.9   2.0    1.8  1  Cytomega_TRL10  Cytomegalovirus TRL10 protein
      0.029   15.2   0.0       0.16   12.9   0.0    2.3  1  EphA2_TM        Ephrin type-A receptor 2 transmembrane domain
      0.036   13.2   0.7      0.097   11.8   0.7    1.7  1  Peptidase_M56   BlaR1 peptidase M56
      0.055   12.5   9.3      0.088   11.8   9.3    1.2  1  BPS1            Protein BYPASS1-related
      0.058   13.1   0.0        0.1   12.3   0.0    1.2  1  GT87            Glycosyltransferase family 87
       0.14   11.7   0.2       0.26   10.8   0.2    1.4  1  DUF5385         Family of unknown function (DUF5385)
       0.37   10.9   0.0       0.37   10.9   0.0    2.4  2  DUF2615         Protein of unknown function (DUF2615)
        1.5    8.1   8.4       0.51    9.7   4.0    2.3  2  DUF5305         Family of unknown function (DUF5305)


Domain annotation for each model (and alignments):
>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   2.6      0.82     1e+03       2      14 ..     503     515 ..     502     516 .. 0.86
   2 !   59.2   1.6   1.4e-19   1.8e-16       2      38 .]     520     556 ..     519     556 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.82
        SKG6   2 sdssnsntvaIav 14 
                 s+ss+s+++a+a+
  CCD23429.1 503 SSSSSSSSAAVAA 515
                 89999999*9996 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 1.4e-19
        SKG6   2 sdssnsntvaIavaVaVPVaViiivLlailifvrRRk 38 
                 +++sns+t aIa++Va+PV+Viiiv++ +++f+rR++
  CCD23429.1 520 TNNSNSKTIAIACGVAIPVGVIIIVIILFFLFWRRKN 556
                 99*********************************97 PP

>> He_PIG  Putative Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.2     3e-09   3.9e-06      11      33 ..      78     100 ..      73     111 .. 0.92
   2 !   18.8   0.0   1.1e-06    0.0013       4      46 ..     198     238 ..     193     241 .. 0.90
   3 ?    2.4   0.2      0.14   1.8e+02      13      29 ..     306     325 ..     303     342 .. 0.58
   4 ?   -1.0   0.0       1.7   2.1e+03      15      28 ..     404     417 ..     403     445 .. 0.85
   5 ?   -2.4   2.4       4.5   5.7e+03      30      48 ..     481     499 ..     468     501 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 3e-09
      He_PIG  11 gLPsGLtLdsstGtitGtpdqtv 33 
                  LPs+Lt++s++ ti+Gtp+++v
  CCD23429.1  78 NLPSWLTFNSESRTISGTPSSSV 100
                 79******************997 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.1e-06
      He_PIG   4 lttpgsngLPsGLtLdsstGtitGt...pdqtvapG.sytftVtatd 46 
                 +      +LP +L++ds t  ++Gt   +++  ap   y+ t+ atd
  CCD23429.1 198 A------PLPNWLFFDSNTLKFSGTapvVNSLIAPEmYYDLTLIATD 238
                 4......8******************999999999989999999998 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.14
      He_PIG  13 PsGLtLdsstGtitGt.....p 29 
                 P + tL  s+ t++G+      
  CCD23429.1 306 PNWVTL--SNSTLSGSlpsdlL 325
                 999999..44445555444432 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 1.7
      He_PIG  15 GLtLdsstGtitGt 28 
                 +L++  s+ t++G+
  CCD23429.1 404 WLSFQLSNLTLQGD 417
                 9999999****998 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 4.5
      He_PIG  30 dqtvapGsytftVtatdgs 48 
                 +++++  + +ft t t++s
  CCD23429.1 481 TSSSHSSTSSFTATITSSS 499
                 5666777777777777665 PP

>> RIFIN  Rifin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.7   3.6e-09   4.6e-06     211     311 ..     454     560 ..     407     566 .. 0.51

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 3.6e-09
       RIFIN 211 kaaltsakekekkeasskekikkkvekive......kaekkaaaaaaeaaaeataeaekaetaave..attaslqtaiiasivaivvIvLimvIIYLiL 301
                 ++  +s+++k++++++s+++i+++++++ +      +++ + +++  +++++ +++  +a +aav+  +  ++++t  ia  vai v v+i+vII + L
  CCD23429.1 454 HSSSSSTTTKNSTSSHSSTVITTRSSSTSSshsstsSFTATITSS--SSSSSSSSSSSSAAVAAVTrnTNNSNSKTIAIACGVAIPVGVIIIVIILFFL 550
                 111122222222222222222222222222111111222222222..33333333333333444430033444555667888***************** PP

       RIFIN 302 RYrRKkKmkk 311
                  +rRK+  k 
  CCD23429.1 551 FWRRKNEKKN 560
                 *****87664 PP

>> DUF1180  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.9   1.9e-08   2.5e-05      27     159 ..     458     592 ..     437     596 .. 0.53

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.9e-08
     DUF1180  27 spaasspeaepPlppgataaespgkataieaksaqaaeggngsspragsaadaggslavvpelssntdkpmtlqrallvlvvvsaavivylvvRtvrlr 125
                 s++ +++++++ ++   t+  s  +++  +++s +a  +++ ss+ ++s++ ++++ av    + n+++ +t++ a  v++ v  ++iv+++   +  r
  CCD23429.1 458 SSTTTKNSTSSHSSTVITTRSSSTSSSHSSTSSFTATITSSSSSSSSSSSSSSAAVAAVTR--NTNNSNSKTIAIACGVAIPVGVIIIVIILFFLFWRR 554
                 1122222222222111111111222222222223333333333322333333344444444..566667778888888888888888888887778777 PP

     DUF1180 126 rrnrktRrYgvldtnien....mEltPLeqdeDedddn 159
                 + ++k+   +  + +ien      +tPL++  D+dddn
  CCD23429.1 555 KNEKKNSDNENKNNDIENgppfAPVTPLNNPFDDDDDN 592
                 8888888788888888884444579***9877777776 PP

>> Stevor  Subtelomeric Variable Open Reading frame
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.9   7.6e-07   0.00098     171     264 ..     469     560 ..     452     568 .. 0.55
   2 ?   -2.9   0.2         3   3.8e+03     253     270 ..     668     685 ..     668     686 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 7.6e-07
      Stevor 171 akaaavaakvalsaealkklasslsilnlfsesslesalkaavsaaaasdlagtaasaassafepygiaalvllilavvliiLYiwlyrRRKnS 264
                  +++++++   +s+++ ++  +s  +  + s+ss +s+ ++++saa+a+ + +t  s ++++  ++g+a+ v +i++v+++++  w ++  K+ 
  CCD23429.1 469 HSSTVITT--RSSSTSSSHSSTSSFTATITSSSSSSSSSSSSSSAAVAAVTRNTNNSNSKTIAIACGVAIPVGVIIIVIILFFLFWRRKNEKKN 560
                 22233333..233333333333333334444444444444666666666666777999999999******999988777666666655555544 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3
      Stevor 253 LYiwlyrRRKnSwkhecK 270
                 LY+ +    K+Swk++ K
  CCD23429.1 668 LYMNMLPSNKKSWKYNSK 685
                 677777889******987 PP

>> Adeno_E3_CR2  Adenovirus E3 region protein CR2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   2.5e-06    0.0032       4      36 ..     526     558 ..     524     560 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.5e-06
  Adeno_E3_CR2   4 stiaIivaVvvGlaiIiicmlyYaCcYrkhraq 36 
                    tiaI  +V++ + +Iii+++++    r+   +
    CCD23429.1 526 KTIAIACGVAIPVGVIIIVIILFFLFWRRKNEK 558
                   69*********9999999998876555554434 PP

>> Cytomega_TRL10  Cytomegalovirus TRL10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   2.0   6.5e-05     0.083      16      92 ..     487     564 ..     457     570 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.5e-05
  Cytomega_TRL10  16 entrltckcspnnetsttgngskchakckc.rvtepitvlgaysawgagsfvatlivllvvffviyareeeknntgte 92 
                       + +t   +  +++s+++++s   a+    r t+      +  a g    v  +i+++++ff+ + r++ek+n+  e
      CCD23429.1 487 STSSFTATITSSSSSSSSSSSSSSAAVAAVtRNTNNSNSKTIAIACGVAIPVGVIIIVIILFFLFWRRKNEKKNSDNE 564
                     333444444444444444555555555544599*9999999*****************************99997655 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00012      0.16       7      37 ..     536     571 ..     528     608 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
    EphA2_TM   7 aglvllvilvilvlvlvrrrsknrkqksdl.....k 37 
                 + + +++i++il+++++rr+++++++++++     +
  CCD23429.1 536 IPVGVIIIVIILFFLFWRRKNEKKNSDNENknndiE 571
                 222233333455566664444444444333333330 PP

>> Peptidase_M56  BlaR1 peptidase M56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7   7.6e-05     0.097      64     147 ..     491     570 ..     468     574 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.6e-05
  Peptidase_M56  64 kinsaaskaplasaaskvlddkasalatdvkkvewktilkillliWivgalilllyliaallvlkkrfvrklgklraeelkeaL 147
                      ++ +s++ ++s+ s + ++ + a+  +++++++kti+ ++ ++  vg++i  + +i  +l ++++   +++++++e++++ +
     CCD23429.1 491 FTATITSSSSSSSSSSSSSSAAVAAVTRNTNNSNSKTIAIACGVAIPVGVII--IVIILFFLFWRRK--NEKKNSDNENKNNDI 570
                    2222223333333333333455569999****************99999999..6677777777766..455555555566555 PP

>> BPS1  Protein BYPASS1-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   9.3   6.8e-05     0.088     160     261 ..     440     552 ..     428     554 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.8e-05
        BPS1 160 LidLaigllde.kdsgssggs.ernrsfgrsks.fhrrsig.....ssgggsigqlr.slswsvsrsWsaakqlqalganLatPrandvaatnglavpv 249
                 L+  +ig+    k+++ss+++ ++n ++++s + + +rs++     ss ++ ++++  s+s s s s s++  + a++ n     ++ +a + g+a+pv
  CCD23429.1 440 LTFTIIGMDPKsKNHSSSSSTtTKNSTSSHSSTvITTRSSStssshSSTSSFTATITsSSSSSSSSSSSSSAAVAAVTRNTNNSNSKTIAIACGVAIPV 538
                 6666788876557766666652455555554446555555555444344444444441555666777788899*************9999999999987 PP

        BPS1 250 ..yimssvlllvmW 261
                    i+  +l++  W
  CCD23429.1 539 gvIIIVIILFFLFW 552
                 22556667777777 PP

>> GT87  Glycosyltransferase family 87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.8e-05       0.1     148     218 ..     484     557 ..     470     563 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.8e-05
        GT87 148 ppssleyfletlfdtseriaedvgnqsllslagllaralalgl.s....avtllwlvlvllvvalaavaawrlrrr 218
                  +ss + f++t++++s+   ++ +++s ++ +++++r ++ +  +    a++++  v v+++v+++++++wr  ++
  CCD23429.1 484 SHSSTSSFTATITSSSS--SSSSSSSSSSAAVAAVTRNTNNSNsKtiaiACGVAIPVGVIIIVIILFFLFWRRKNE 557
                 579999*********88..555555554455555555444444413445599999999999999999999998754 PP

>> DUF5385  Family of unknown function (DUF5385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2    0.0002      0.26      12      40 ..     540     568 ..     534     573 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
     DUF5385  12 iiiiilvivfllrkkkkqkeeekaggkik 40 
                 +iii+++  fl++++k++k+++ +++k++
  CCD23429.1 540 VIIIVIILFFLFWRRKNEKKNSDNENKNN 568
                 34444556666677777777666666554 PP

>> DUF2615  Protein of unknown function (DUF2615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00029      0.37      53     104 ..     530     577 ..     495     579 .. 0.55
   2 ?   -3.2   0.2         7     9e+03      75      92 ..     754     773 ..     751     781 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00029
     DUF2615  53 gsslfliallwlvvaavlfllrPsslrnasaknkpsrkdnnddddsqepppp 104
                     + i + +++++++lf+l    +r+ ++++k+s+++n+++d ++ pp +
  CCD23429.1 530 IACGVAIPVGVIIIVIILFFL---FWRR-KNEKKNSDNENKNNDIENGPPFA 577
                 223334445566667777776...5887.56666666666666667777755 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7
     DUF2615  75 Psslrna..saknkpsrkdn 92 
                 Pss  ++  ++++k+++k+n
  CCD23429.1 754 PSSSISFtnNSNGKNNNKNN 773
                 55444443233333333333 PP

>> DUF5305  Family of unknown function (DUF5305)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   4.0    0.0004      0.51      56     150 ..     475     566 ..     433     572 .. 0.70
   2 ?   -0.5   0.1      0.54   6.9e+02      38      70 ..     741     773 ..     739     778 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0004
     DUF5305  56 vlevnvegeidgesieesktsrlpiplteqtyeikkdetdeengeitetvtvkespslae..gilliilgllaliglvvlirriiftsskaekyele 150
                 +++ +    ++  s++ +++ + +i+ +++  + ++++++     +t ++++++s+++a   g+++ + +++++i+l++l++r ++  +k +  e++
  CCD23429.1 475 TTRSS----STSSSHSSTSSFTATITSSSSSSSSSSSSSSAAVAAVTRNTNNSNSKTIAIacGVAIPVGVIIIVIILFFLFWR-RKNEKKNSDNENK 566
                 22222....23477777788888888877777777777777777777777777777777788777777788888888888888.4444443444444 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.54
     DUF5305  38 eeieeelglsvgtseltvvlevnvegeidgesi 70 
                 ++++++ g+s+ t++ +++++ n +g+ +++++
  CCD23429.1 741 NSMKQQKGISTMTPSSSISFTNNSNGKNNNKNN 773
                 7899**********************8888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1736  (0.0968264); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.01u 0.32s 00:00:01.33 Elapsed: 00:00:00.46
# Mc/sec: 5608.13
//
Query:       CCD23430.1  [L=366]
Description: hypothetical protein NDAI_0B03960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-51  171.6   4.4    2.3e-49  165.6   2.3    2.6  2  EF-hand_4      Cytoskeletal-regulatory complex EF hand
      2e-33  116.3   9.9    2.5e-30  106.2   9.9    2.2  1  End3           Actin cytoskeleton-regulatory complex protein 
     0.0083   15.6   2.0      0.022   14.3   2.0    1.8  1  EF-hand_1      EF hand
  ------ inclusion threshold ------
      0.031   14.6   3.4       0.17   12.3   0.5    2.6  2  CC2-LZ         Leucine zipper of domain CC2 of NEMO, NF-kappa
      0.098   12.6   9.0       0.78    9.7   2.8    2.7  2  Prefoldin_2    Prefoldin subunit
        0.1   12.9   0.8       0.95    9.8   0.0    2.2  2  Cadherin_tail  Cadherin C-terminal cytoplasmic tail, catenin-
       0.14   11.7   5.5      0.065   12.8   1.7    2.2  2  PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subun
       0.19   12.0   4.2        1.1    9.6   0.8    2.3  2  DUF641         Plant protein of unknown function (DUF641)
        0.2   11.0   7.4        1.4    8.2   0.4    2.4  2  GAS            Growth-arrest specific micro-tubule binding
        0.3   11.3   6.3        2.7    8.3   1.7    2.5  2  XhlA           Haemolysin XhlA
       0.69   10.0   7.6        4.7    7.3   0.6    2.4  2  ADIP           Afadin- and alpha -actinin-Binding
       0.72   10.1   7.5        1.4    9.2   1.4    2.5  2  Spc24          Spc24 subunit of Ndc80
       0.88    9.7   6.8          2    8.6   0.2    2.7  2  Cep57_CLD_2    Centrosome localisation domain of PPC89
        1.4    9.3   9.5          5    7.5   0.3    3.0  3  Csm1_N         Csm1 N-terminal domain
        1.5    9.0  10.6        1.8    8.7   1.3    3.0  3  Tropomyosin_1  Tropomyosin like
        1.7    8.8   9.1         11    6.2   9.1    2.2  1  Fib_alpha      Fibrinogen alpha/beta chain family
        2.4    8.1   7.8       0.52   10.2   2.8    2.3  2  Prefoldin      Prefoldin subunit
        3.3    8.3   7.2         12    6.4   1.2    2.7  3  DUF2408        Protein of unknown function (DUF2408)
        5.7    7.4   8.3        8.7    6.9   1.4    2.4  2  DUF4140        N-terminal domain of unknown function (DUF4140
        9.9    6.6   8.4         12    6.4   1.4    3.1  3  FlaC_arch      Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.6   2.3   2.6e-52   2.3e-49       1     103 [.       1     103 [.       1     104 [. 0.99
   2 ?    5.5   0.0     0.019        17      39      99 ..     164     223 ..     127     227 .. 0.69

  Alignments for each domain:
  == domain 1  score: 165.6 bits;  conditional E-value: 2.6e-52
   EF-hand_4   1 mpkleeleikkyweifsglkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpeskahl 99 
                 mpkle++eikkyw+ifsglkp++nk+t+d+v p+l nskl+++ l+kiw ladid+d++ldfeef+i+mrlifd+vn++i++vP+elPewl+p ska+l
  CCD23430.1   1 MPKLEQFEIKKYWQIFSGLKPVENKVTHDQVLPILYNSKLDSSILNKIWFLADIDDDDNLDFEEFVICMRLIFDMVNKNIEKVPDELPEWLIPGSKAKL 99 
                 9************************************************************************************************** PP

   EF-hand_4 100 vqan 103
                 v+++
  CCD23430.1 100 VKER 103
                 *986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.019
   EF-hand_4  39 kleedklekiwdladidedgkldfeefciamrlifdlvngeikdvPselPewlvpeskahl 99 
                 ++ ++ ++kiw+l +  +  ++d +   + ++ +    n+  +++P+elP +l     ++ 
  CCD23430.1 164 NIGTSDFSKIWELINPKNLASIDKDPALLFIHCL-RQRNDVNAAIPKELPPALANICNKQT 223
                 4567789999998777777777777655555543.34588889999999999987666655 PP

>> End3  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   9.9   2.7e-33   2.5e-30       1     199 []     186     358 ..     186     358 .. 0.83

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 2.7e-33
        End3   1 dkDqaLvflHiLnqRee.GiriPrevPasLratfekekidydlnserassasktaaksksetstgkkakfgdsylsrlGvgsksekgtdfsatkgtdwe 98 
                 dkD+aL+f+H+L+qR++  + iP+e+P++L ++++k++i+ydl+s++            + t+t             +      +++td ++ ++ d e
  CCD23430.1 186 DKDPALLFIHCLRQRNDvNAAIPKELPPALANICNKQTIKYDLDSNQP-----NL---TRPTTTAP-----------I------TTNTDNESPSTSDAE 259
                 8******************************************77333.....11...11222221...........2......57899999999**** PP

        End3  99 evrLkreLaeLeeklekveeeaekrkekereessksalvkreleqLLkYKeeqlreleegegkske.knlksvkedietveeqVegLesylssrkeeLe 196
                   rL+ +L+eL++k e+ +++   + ++++ + ++ ++v++++e LL+Y ++q  ++ ++ +   + ++++ ++ed++++e+qV++Le+yl+++k+eL+
  CCD23430.1 260 IKRLENKLKELDTKSEAKRNQPVAS-STSSIDPERLNVVREQFEGLLDYLRQQTLNNASNAQ--PPsADIRVITEDLDSIEQQVKVLENYLTKKKDELQ 355
                 **************99888776654.4455558899*************8888755544443..3339******************************* PP

        End3 197 qLk 199
                 +Lk
  CCD23430.1 356 SLK 358
                 *96 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   2.0   2.5e-05     0.022       2      27 ..      45      70 ..      44      72 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.5e-05
                HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellk 27
                l++i+ ++D D d  +dfeEf+ +++
  CCD23430.1 45 LNKIWFLADIDDDDNLDFEEFVICMR 70
                789*********************98 PP

>> CC2-LZ  Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.23   2.1e+02       7      36 ..     251     280 ..     245     311 .. 0.75
   2 ?   12.3   0.5   0.00018      0.17      13      48 ..     330     365 ..     320     366 .] 0.90

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.23
      CC2-LZ   7 eaekvkkeeieeLkaqlqaaeealaakqee 36 
                 e+  ++ +ei++L+++l++ + + +ak+++
  CCD23430.1 251 ESPSTSDAEIKRLENKLKELDTKSEAKRNQ 280
                 444556778888888888887777777765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00018
      CC2-LZ  13 keeieeLkaqlqaaeealaakqeeidelkeeikkke 48 
                  e+++++++q++  e+ l++k++e++ lk+ei++++
  CCD23430.1 330 TEDLDSIEQQVKVLENYLTKKKDELQSLKQEIQSHS 365
                 57899***************************9875 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.4     0.017        15      72      96 ..     254     278 ..     245     281 .. 0.82
   2 ?    9.7   2.8   0.00087      0.78      69     101 ..     331     363 ..     328     365 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.017
                  HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  72 etlekeiktlekqleklekeleelk 96 
                   t ++eik+le++l++l ++ e  +
   CCD23430.1 254 STSDAEIKRLENKLKELDTKSEAKR 278
                  5788999999999999999988765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00087
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
  Prefoldin_2  69 erketlekeiktlekqleklekeleelkeelqk 101
                  e+++++e+++k le+ l+k++ el+ lk+e+q+
   CCD23430.1 331 EDLDSIEQQVKVLENYLTKKKDELQSLKQEIQS 363
                  67899*************************995 PP

>> Cadherin_tail  Cadherin C-terminal cytoplasmic tail, catenin-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0    0.0011      0.95      78     123 ..      80     121 ..      68     127 .. 0.78
   2 ?    1.1   0.3      0.53   4.8e+02      85     113 ..     232     260 ..     219     280 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0011
  Cadherin_tail  78 kqlvPdepenfiiPGspAiisirqeqalpqddksdfitfgkkeeak 123
                     ++vPde  + +iPGs A +  ++ +   q++++     +kke++k
     CCD23430.1  80 IEKVPDELPEWLIPGSKAKLVKERMKM-KQQENA---DIPKKEPPK 121
                    5689***88899*******98877776.343434...489999887 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.53
  Cadherin_tail  85 penfiiPGspAiisirqeqalpqddksdf 113
                    + n+  P  +A i+++ ++++p++  +++
     CCD23430.1 232 QPNLTRPTTTAPITTNTDNESPSTSDAEI 260
                    45778899**********99888776663 PP

>> PI3K_P85_iSH2  Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       1.2   1.1e+03      89     105 ..     259     275 ..     244     293 .. 0.65
   2 ?   12.8   1.7   7.3e-05     0.065       7      49 ..     321     363 ..     314     365 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.2
  PI3K_P85_iSH2  89 nleqlksrlkelhsske 105
                     +++l+++lkel  ++e
     CCD23430.1 259 EIKRLENKLKELDTKSE 275
                    34444555555544443 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 7.3e-05
  PI3K_P85_iSH2   7 vkegdleklseklrevskqlqekskeydqlkeeynkiseeiql 49 
                     ++ d++++ e+l  +++q++  ++ + ++k+e +++++eiq 
     CCD23430.1 321 PPSADIRVITEDLDSIEQQVKVLENYLTKKKDELQSLKQEIQS 363
                    5789*************************************96 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.096        86      93     123 ..     245     275 ..     216     280 .. 0.76
   2 ?    9.6   0.8    0.0012       1.1      60     118 ..     307     364 ..     298     366 .] 0.84

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.096
      DUF641  93 tvkkleaelkakdseieeLkekLeeaeksnk 123
                 t++  ++  ++ d+ei++L++kL+e+  +++
  CCD23430.1 245 TTNTDNESPSTSDAEIKRLENKLKELDTKSE 275
                 55555556677899**********9988766 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0012
      DUF641  60 yrkkqkkkaseaeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeea 118
                 y+++q+ +++  + +  +a i+   + l++ e  vk le+ l++k+ e+++Lk+++++ 
  CCD23430.1 307 YLRQQTLNNA-SNAQPPSADIRVITEDLDSIEQQVKVLENYLTKKKDELQSLKQEIQSH 364
                 6666666655.56666778888888999***************************9975 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.4    0.0016       1.4     147     191 ..     263     306 ..     254     315 .. 0.87
   2 ?    5.1   2.6     0.014        12      55      93 ..     325     360 ..     304     366 .] 0.52

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0016
         GAS 147 LekklkalqeelEkkeaqleevlaaanldpaalsavsekleevle 191
                 Le+klk+l+ + E+k  q  +   ++++dp+ l+ v+e++e +l+
  CCD23430.1 263 LENKLKELDTKSEAKRNQPVASS-TSSIDPERLNVVREQFEGLLD 306
                 9**************99987765.89**************99887 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.014
         GAS  55 enkrlkepLkkaeeeveeLrkqlknyekdkqslknlkar 93 
                 + + ++e L   e++v+ L++ l + + + qsl   k++
  CCD23430.1 325 DIRVITEDLDSIEQQVKVLENYLTKKKDELQSL---KQE 360
                 555555555555555555555554333333333...222 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2     0.039        35       5      19 ..     259     273 ..     248     287 .. 0.62
   2 ?    8.3   1.7     0.003       2.7       6      42 ..     326     362 ..     323     363 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.039
        XhlA   5 rlerietkldnleer 19 
                 +++r+e+kl++l+++
  CCD23430.1 259 EIKRLENKLKELDTK 273
                 345555555555554 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.003
        XhlA   6 lerietkldnleervdkleekaaeaeekiknleedlk 42 
                 +  i ++ld++e++v+ le+  ++ + ++++l  ++ 
  CCD23430.1 326 IRVITEDLDSIEQQVKVLENYLTKKKDELQSLKQEIQ 362
                 6678899*************************99986 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.6    0.0052       4.7      59      89 ..     250     280 ..     245     295 .. 0.86
   2 ?    6.1   1.2     0.012        11      92     128 ..     328     364 ..     307     366 .] 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0052
        ADIP  59 netirkleaeierlqskierlktqleqlere 89 
                 ne  ++ +aei+rl++k + l+t++e+++++
  CCD23430.1 250 NESPSTSDAEIKRLENKLKELDTKSEAKRNQ 280
                 56668999*****************999987 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.012
        ADIP  92 lvqakerqlekklktleqklknekeelqrlknalqqi 128
                 + ++++ ++e+++k le+ l ++k+elq lk+ +q+ 
  CCD23430.1 328 VITEDLDSIEQQVKVLENYLTKKKDELQSLKQEIQSH 364
                 5677888889999999999999999999999888875 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.5     0.071        63      17      43 ..     257     283 ..     246     302 .. 0.65
   2 ?    9.2   1.4    0.0016       1.4       9      43 ..     329     363 ..     324     366 .] 0.90

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.071
       Spc24  17 eselesleselaelkeeleeleeesee 43 
                 ++e+++le++l+el ++ e   ++ ++
  CCD23430.1 257 DAEIKRLENKLKELDTKSEAKRNQPVA 283
                 556667777777776666666665555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0016
       Spc24   9 iakelsdleselesleselaelkeeleeleeesee 43 
                 i+++l+++e++++ le+ l+++k+el+ l++e ++
  CCD23430.1 329 ITEDLDSIEQQVKVLENYLTKKKDELQSLKQEIQS 363
                 678999************************99887 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2    0.0022         2       2      21 ..     257     276 ..     257     285 .. 0.93
   2 ?    2.8   1.9      0.14   1.3e+02      10      32 ..     331     360 ..     324     365 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0022
  Cep57_CLD_2   2 eaevktLqnrLdsltrklqv 21 
                  +ae+k+L+n+L+ l++k ++
   CCD23430.1 257 DAEIKRLENKLKELDTKSEA 276
                  79***************986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.14
  Cep57_CLD_2  10 nrLdsltrklqvhe.......eelkrLnkE 32 
                  ++Lds+++++ v e       +el++L +E
   CCD23430.1 331 EDLDSIEQQVKVLEnyltkkkDELQSLKQE 360
                  566777777777666666666666666555 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       9.1   8.2e+03      25      35 ..      99     109 ..      97     114 .. 0.45
   2 ?    7.5   0.3    0.0056         5      35      62 ..     252     279 ..     247     285 .. 0.83
   3 ?    6.6   0.9     0.011       9.5      31      52 ..     342     363 ..     325     366 .] 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 9.1
      Csm1_N  25 lvhENsvLsqk 35 
                 lv+E   ++q+
  CCD23430.1  99 LVKERMKMKQQ 109
                 45544333333 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0056
      Csm1_N  35 kletkdqeiesLkeqlaeleekvkelee 62 
                   +t d ei++L+++l+el++k++   +
  CCD23430.1 252 SPSTSDAEIKRLENKLKELDTKSEAKRN 279
                 557899***************9987655 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.011
      Csm1_N  31 vLsqkletkdqeiesLkeqlae 52 
                 vL++ l +k++e++sLk+++++
  CCD23430.1 342 VLENYLTKKKDELQSLKQEIQS 363
                 7888888999999999999887 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       1.7   1.6e+03      15      31 ..      96     112 ..      93     117 .. 0.83
   2 ?    5.6   0.1     0.018        16      33      53 ..     256     276 ..     227     304 .. 0.67
   3 ?    8.7   1.3     0.002       1.8      16      46 ..     333     363 ..     324     366 .] 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.7
  Tropomyosin_1  15 kaeeleekvKeleqenl 31 
                    ka+ ++e++K ++qen 
     CCD23430.1  96 KAKLVKERMKMKQQENA 112
                    78889999999999986 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.018
  Tropomyosin_1  33 keqeiksLtkknqqleeevek 53 
                     + eik L++k+++l+ + e 
     CCD23430.1 256 SDAEIKRLENKLKELDTKSEA 276
                    344444444444444444333 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.002
  Tropomyosin_1  16 aeeleekvKeleqenlekeqeiksLtkknqq 46 
                     + +e++vK le+  ++k +e++sL++ +q 
     CCD23430.1 333 LDSIEQQVKVLENYLTKKKDELQSLKQEIQS 363
                    67899********************999885 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   9.1     0.012        11      33     127 ..     256     363 ..     240     366 .] 0.66

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.012
                 CCHHHCCCCCCCCCCCCHHHHHHH..HHHHHHHHHHHHHHHHHH.........HHHHHHHHHHH..HHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  33 vkkdlekleneleeisnstkeaee..lvkeikdslrekqkskkd.........ndnvikksske..leeeilrlketidaqesnirvLqnvlesneqki 118
                  + ++++len+l+e+  +++  ++  + ++++++  e+ +  ++          ++++++ s+      +i  + e +d+ e++++vL n l +++ ++
  CCD23430.1 256 SDAEIKRLENKLKELDTKSEAKRNqpVASSTSSIDPERLNVVREqfeglldylRQQTLNNASNAqpPSADIRVITEDLDSIEQQVKVLENYLTKKKDEL 354
                 5667777777777776655443321144444444445555555445555554424444443332113458999************************** PP

                 HHHHHHHHH CS
   Fib_alpha 119 qkLeqdidq 127
                 q L+q+i++
  CCD23430.1 355 QSLKQEIQS 363
                 ******986 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       1.2   1.1e+03      86      99 ..     260     273 ..     252     281 .. 0.46
   2 ?   10.2   2.8   0.00058      0.52      79     118 ..     326     365 ..     320     366 .] 0.92

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHH CS
   Prefoldin  86 leelekqlekleee 99 
                 ++ le+ l++l  +
  CCD23430.1 260 IKRLENKLKELDTK 273
                 33333333333333 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00058
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  79 iellkkkleelekqlekleeeleklkdqittleanlaqly 118
                 i+++ + l+++e+q+++le+ l+k+kd++++l ++++  +
  CCD23430.1 326 IRVITEDLDSIEQQVKVLENYLTKKKDELQSLKQEIQSHS 365
                 5678899*****************************9765 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.8   5.2e+03      71      89 ..     118     143 ..      70     147 .. 0.60
   2 ?    6.4   1.2     0.014        12      34      83 ..     250     300 ..     209     315 .. 0.71
   3 ?    4.9   0.7     0.042        37      23      78 ..     305     360 ..     291     365 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.8
     DUF2408  71 e.......vvekgqavlngLlddcfd 89 
                 e       ++++ +++ ++L + c +
  CCD23430.1 118 EppkmdwyMSPEDKTLYEDLWNSCTK 143
                 02223444666666666777777765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.014
     DUF2408  34 akeseevkeelkelkeeLkkieskrde.egkFkseegkevvekgqavlngL 83 
                 +++ ++ ++e+k+l+++Lk++++k +  +++ + +++++++++  +v+++ 
  CCD23430.1 250 NESPSTSDAEIKRLENKLKELDTKSEAkRNQPVASSTSSIDPERLNVVREQ 300
                 223334799*************98776434444555557777776666655 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.042
     DUF2408  23 lslaakskaeeakeseevkeelkelkeeLkkieskrdeegkFkseegkevvekgqa 78 
                 l ++ +++ ++a++++  ++++  + e+L +ie++ +  +++ +++++e+++ +q+
  CCD23430.1 305 LDYLRQQTLNNASNAQPPSADIRVITEDLDSIEQQVKVLENYLTKKKDELQSLKQE 360
                 44444444444444444577777777777777777777777766666666655555 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.8     0.065        58      54      84 ..     246     277 ..     222     285 .. 0.61
   2 ?    6.9   1.4    0.0097       8.7      65      96 ..     324     362 ..     286     365 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.065
     DUF4140  54 vervpnreaeee.elkalraeleeledelaal 84 
                 + ++ ++++ ++ e+k+l+++l+el ++ +a 
  CCD23430.1 246 TNTDNESPSTSDaEIKRLENKLKELDTKSEAK 277
                 33333333333334666666666666655544 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0097
     DUF4140  65 e.......elkalraeleeledelaaledelaaaearla 96 
                 +       +l++++++++ le  l++ +del++++++++
  CCD23430.1 324 AdirviteDLDSIEQQVKVLENYLTKKKDELQSLKQEIQ 362
                 255566633888888888888888888888888887765 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       8.1   7.3e+03      31      40 ..      74      83 ..      72      87 .. 0.61
   2 ?    3.5   0.1      0.11        96       2      21 ..     260     279 ..     259     304 .. 0.84
   3 ?    6.4   1.4     0.013        12       3      31 ..     334     362 ..     330     365 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 8.1
   FlaC_arch 31 eelkenVkdl 40
                +++++n++++
  CCD23430.1 74 DMVNKNIEKV 83
                4556666554 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.11
   FlaC_arch   2 idelEnklsklsteletvkk 21 
                 i+ lEnkl++l+t+ e  ++
  CCD23430.1 260 IKRLENKLKELDTKSEAKRN 279
                 789*********98766554 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.013
   FlaC_arch   3 delEnklsklsteletvkkeneelsksve 31 
                 d++E++++ l+  l+  k+e+++l+++++
  CCD23430.1 334 DSIEQQVKVLENYLTKKKDELQSLKQEIQ 362
                 78999999999999999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1370  (0.0764125); expected 358.6 (0.02)
Passed bias filter:                      664  (0.037035); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 2473.08
//
Query:       CCD23431.1  [L=527]
Description: hypothetical protein NDAI_0B03970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.6e-147  492.1  10.5   1.8e-147  491.9  10.5    1.0  1  Cpn60_TCP1   TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
       0.15   11.6   0.0       0.34   10.5   0.0    1.5  1  CRM1_repeat  Chromosome region maintenance or exportin repeat


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  491.9  10.5    2e-151  1.8e-147       3     491 .]      31     519 ..      29     519 .. 0.98

  Alignments for each domain:
  == domain 1  score: 491.9 bits;  conditional E-value: 2e-151
                 HHHHCCSSTTXXEEEEEE.TTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHC.TXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   3 divkttlGPkGmdKmlvn.kggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaa.gvhpttiiegyekale 99 
                 d+vk+tlGPkGmdK+l++ + +k  vTnDGatilk++ +++Paak+lv++++ qd+evGDGTt+v++L +eLl+eaekli++ ++hp+tiieg++ a  
  CCD23431.1  31 DLVKSTLGPKGMDKLLQSaSSDKALVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIEQsKIHPQTIIEGFRIASR 129
                 89****************99******************************************************************************* PP

                 HHHHHHHHHXEEBXSC.STT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--SSTTSSC CS
  Cpn60_TCP1 100 kaleaLkeiaveisse.ekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsledselveGlvldkgvlspdmpk 197
                 +al+aL++ av+ s++  k r++L+++a+t+lssk+ s+++e++s+l++dA++ ++   ++ +l+ i+++ki gg+l+ds l eG++l+k++ ++  pk
  CCD23431.1 130 AALDALEKAAVDNSHDeAKFRNDLIHIAKTTLSSKILSQDKEYFSNLATDAILRLK---GSTNLEHIQIIKILGGNLSDSFLDEGFILQKKFGNN-QPK 224
                 ******99988888876779********************************6665...569******************************998.5** PP

                 EEECEEEEEESS-BS--HHCC.HHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHHT- CS
  Cpn60_TCP1 198 klenakvllldvsLeiektet.kttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakatGa 295
                 ++enak+l+ +++L+++k ++  t++++++ ++l++lekae+++++ ++ ki k g n +++ + i d+ ++++ + +i  +++++ + +erla +tG+
  CCD23431.1 225 RVENAKILIANTTLDTDKVKIfGTKFKVDSTSKLAQLEKAEREKMKSKITKISKFGINTFINRQLIYDYPEQLFTDLNINSIEHADFEGVERLALVTGG 323
                 ******************988799*************************************************************************** PP

                 -EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCTS CS
  Cpn60_TCP1 296 tavssledltpeelGtakkveeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaksv 394
                 ++vs+++++++ +lG+++ +ee  ig+e+++ ++++k g+++ti+lrgatd+vlde+er+++dAl+v+++++++ + v+GGG++e+ ++k ++++a++v
  CCD23431.1 324 EVVSTFDNPEKCKLGECDLIEEIIIGEESFLKFSGCKAGEACTIVLRGATDQVLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMIMSKSVDTEAQNV 422
                 *************************************************************************************************** PP

                 XCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXXXX CS
  Cpn60_TCP1 395 sgeeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiikakk 491
                 +g+++la+eafa+AL ++p +La NaG+d+ e+++klr++  +g  + g+d+++g+i d+ e g+v+++k k+ +++sA+eaa+ +Lr+d+ii+ak+
  CCD23431.1 423 DGKKALAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMRELGIVESFKLKSAVVSSASEAAEVLLRVDNIIRAKP 519
                 **********************************************************************************************985 PP

>> CRM1_repeat  Chromosome region maintenance or exportin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.8e-05      0.34       6      21 ..      73      88 ..      71      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.8e-05
                 HHHHHHHHHHHHSHHH CS
  CRM1_repeat  6 alqYLvkISeVedrEi 21
                 a + Lv+IS+V+d+E+
   CCD23431.1 73 AAKVLVNISKVQDDEV 88
                 6689***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3955.94
//
Query:       CCD23432.1  [L=165]
Description: hypothetical protein NDAI_0B03980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1358.31
//
Query:       CCD23433.1  [L=587]
Description: hypothetical protein NDAI_0B03990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-15   58.1   0.0    2.1e-15   57.0   0.0    1.5  1  Helicase_C  Helicase conserved C-terminal domain
    3.6e-05   23.6   0.0    9.4e-05   22.2   0.0    1.6  1  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.026   14.5   0.2      0.068   13.2   0.2    1.7  1  HAP2-GCS1   Male gamete fusion factor
       0.15   12.3   0.0       0.33   11.2   0.0    1.5  1  AAA_22      AAA domain


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   4.6e-19   2.1e-15      12     107 ..     382     473 ..     371     476 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 4.6e-19
                 HTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTS CS
  Helicase_C  12 leeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRt 107
                 +   ++k++i+++ + ++e  kl    +   +  +hg+lp++e+++  ++f  +++++++i t+ +++Gidi++v+lVi++d+  ++ +yiq +GR 
  CCD23433.1 382 EYDTKSKVIIVCKEKVTVE--KLY---FRQDSEWVHGDLPSEEKIKKSRRFIeDEKCRIMIGTKLVSEGIDIKGVKLVIMLDYLPSIGEYIQTAGRL 473
                 667899************5..444...6678999*****************8578899**************************************6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.1e-08   9.4e-05      19     170 ..     167     314 ..     152     319 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.1e-08
                 EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHH.HH.... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.... RF
        DEAD  19 vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrldd.ll.... 112
                 ++a  G  KT+ f+ip +   y   g++++  ++ +P   L  ++  +l++++ ++++   l+++g a  ++++     +d++vgt   l +  +    
  CCD23433.1 167 IQALPGFRKTALFQIPSVVLSY---GEQKTVSFVFVPYVCLLSNMKLRLSSCGINCGILKDLFVNGPAV-EEKNL---FCDVYVGTFNDLGSeNFlrlv 258
                 78888899**********6665...788889************************99777788888777.33333...49*******666553223443 PP

                 HCTSSHCTTE..EEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 113 stgklnlsqv..rflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 ++ +  ++++   ++V+DE ++l  +  ++ +  r+++++     + +l  +v+v++ T+ 
  CCD23433.1 259 NNWYNIYQDCilGMIVIDEFHNLETEqLYRGQSFRLISEI-----NFNLAWKVVVMTGTAG 314
                 55553477765588*********98878999999999999.....3445556999998875 PP

>> HAP2-GCS1  Male gamete fusion factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.5e-05     0.068      19      48 .]     477     507 ..     476     507 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
   HAP2-GCS1  19 Gvslsafakqpd.fCstkagtClknQlkdyy 48 
                 Gv ls + k++   Cs k+  C+ +Q++++y
  CCD23433.1 477 GVCLSYWTKRSVqTCSVKPDVCITKQVSKFY 507
                 899999**98877****************97 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.3e-05      0.33      45     111 ..     227     288 ..     218     313 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.3e-05
      AAA_22  45 vtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrseealee 111
                 v+ p+ ++   ++   +  +++ +++   +  +l++  ++  +++   ++++iDE+++l + e+l  
  CCD23433.1 227 VNGPAVEEKNLFCDVYVGTFNDLGSE---NFLRLVNNWYNIYQDCIL-GMIVIDEFHNL-ETEQLYR 288
                 55555555666666666666655555...777888888888888888.***********.7666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 4239.29
//
Query:       CCD23434.1  [L=192]
Description: hypothetical protein NDAI_0B04000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1478.12
//
Query:       CCD23435.1  [L=827]
Description: hypothetical protein NDAI_0B04010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-58  197.1   3.7    7.4e-58  195.6   3.6    1.9  2  MKT1_C          Temperature dependent protein affecting M2 ds
    3.8e-27   94.5   0.1    3.6e-26   91.3   0.0    2.8  2  MKT1_N          Temperature dependent protein affecting M2 ds
    7.3e-20   71.3   0.0      2e-19   69.9   0.0    1.8  1  XPG_N           XPG N-terminal domain
     0.0084   16.2   1.1       0.16   12.0   0.1    3.0  2  Hormone_3       Pancreatic hormone peptide
  ------ inclusion threshold ------
       0.02   15.2   0.1      0.091   13.1   0.1    2.2  1  XPG_I           XPG I-region


Domain annotation for each model (and alignments):
>> MKT1_C  Temperature dependent protein affecting M2 dsRNA replication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       1.9   6.7e+03     146     170 ..      20      44 ..      15      47 .. 0.78
   2 !  195.6   3.6   2.1e-61   7.4e-58       1     239 [.     568     819 ..     568     820 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1.9
      MKT1_C 146 PffldtntglGivvktyldellkee 170
                 P  +  n  lGi +++y+  ll+ +
  CCD23435.1  20 PIESLKNSTLGIDINHYVSRLLSYK 44 
                 777778999********99998743 PP

  == domain 2  score: 195.6 bits;  conditional E-value: 2.1e-61
      MKT1_C   1 RfLelrgyvde.....kheltkwGkaLakalkelk..eleealllaleLlrlgvLtgdenekpeys...gapsl.gseeekksilLisRvasLlplrlk 88 
                 R+L+ ++++d      + ++tk+G++L++++k +   + ++++ll+l++l+++v++++e+ kp+ +   +  +l ++++e+++ilLi+R+++L++++++
  CCD23435.1 568 RVLTQLEFFDFniptkSLKPTKLGSVLLNLPKLSIddKHYDSILLLLIFLKTKVMSLSEDVKPSVRsalSDVTLrTYPQESQYILLITRILTLFQINQR 666
                 89********99999556****************996666*************************99995566669*********************** PP

      MKT1_C  89 pigytgplsrdllaFrslvkllrrslreliEavlvslllsgeanr...erddw.lelsssLPffldt.ntglGivvktyldellkeeekstsgeakeda 182
                 p++y+gp+++++l+Fr++++++r++++e++Ea+l+s+l+ +e++r   ++++w +++++++Pf+l t nt+++++++++l+++l+      +g+ k+da
  CCD23435.1 667 PTNYHGPIDKKTLIFREHLDFIRENMNEIYEATLISSLTANEFDRlslDNFEWqSKVVRNMPFKLATpNTIMAMMWEFFLQKYLH------NGNVKTDA 759
                 ***********************************************98889*9******************************9......9******* PP

      MKT1_C 183 lellkkvf...pnvedlkedlerafefwdavyalvkelseekliskellkefekadewle 239
                 l+l++++f   ++v +l+e++e ++e++ ++++++kel++  l++ ++lk +e+a e+++
  CCD23435.1 760 LALVATEFgtyKSVPNLNEQFEHSYEYLMQILKVLKELNAIGLFDRKDLKIVEEALEFCS 819
                 ********76666******************************************99976 PP

>> MKT1_N  Temperature dependent protein affecting M2 dsRNA replication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.3   0.0     1e-29   3.6e-26       1      90 []     396     485 ..     396     485 .. 1.00
   2 ?   -1.9   0.0       1.2   4.4e+03      23      44 ..     560     582 ..     544     611 .. 0.80

  Alignments for each domain:
  == domain 1  score: 91.3 bits;  conditional E-value: 1e-29
      MKT1_N   1 PnDlheylgqrLPeelyyylsrGligprilnaltsgelieeppldggdseeYrklvtdllteireqalnLltqrlhrfyqakdvkvkvwf 90 
                 PnD+h+++ q+LP+e+y+y s Gl++ ++++a+ +g + eeppldgg+s++Yr+l++ +   ++++ +nLltq+++r++q k++k ++wf
  CCD23435.1 396 PNDVHDFIAQQLPSEYYFYRSLGLVTGKLFDAISTGIYPEEPPLDGGSSDSYRELLKLSVDMFKNKDINLLTQPINRYFQMKQIKQIKWF 485
                 9****************************************************************************************9 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
      MKT1_N  23 Gligprilnaltsgelie.eppl 44 
                  l++  +l +lt+ e+ + ++p+
  CCD23435.1 560 DLLSTSMLRVLTQLEFFDfNIPT 582
                 58999999999999988755555 PP

>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   5.7e-23     2e-19       1      97 [.       1      99 [.       1     103 [. 0.95

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 5.7e-23
                X--TTHHHHHHHH-GEEEEEGGGGTTEEEEEEHHHHHHHHHHHSE.ETTEE-BS..-HHHHHHHHHHHHHHHTTEEEEEEE--S--GGGHHHHHHHHHH CS
       XPG_N  1 MGikgLlkllkevaairsvsiealegkklaiDaslwlyrfliavreqlgnalen..tshlmglfsrllrlldfgikPifVFdgkapdlkkeelekrser 97
                M ik+L+  l+e+++++ + ie+l++ +l+iD++++++r+l  ++eq  +a+ +  ts++m+l+s+l+++++++i+Pif+F+g  ++++ e    +++ 
  CCD23435.1  1 MPIKSLETYLFERGLVGAYPIESLKNSTLGIDINHYVSRLLSYKKEQFLDAIGGfpTSLKMYLESDLKIFKEYKITPIFIFNGSMTYNQLESNGYFNAS 99
                89***************************************************************************************9988777665 PP

>> Hormone_3  Pancreatic hormone peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   4.5e-05      0.16       1      27 [.     157     183 ..     157     184 .. 0.97
   2 ?    1.2   0.1      0.11   3.9e+02      24      32 ..     648     656 ..     641     656 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.5e-05
                 XSSXXXXXTTS-HHHHHHHHHHHHHHH CS
   Hormone_3   1 PlkPerPgedaspEeLakYyaaLrhYl 27 
                 P++P+ P+ + s+ eL +Y ++L +Y+
  CCD23435.1 157 PIQPQEPFRYNSVIELKRYQSDLINYF 183
                 99***********************97 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.11
                 HHHHHHHTT CS
   Hormone_3  24 rhYlnlvTR 32 
                  +Y++l+TR
  CCD23435.1 648 SQYILLITR 656
                 59******9 PP

>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   2.5e-05     0.091       4      94 .]     187     268 ..     185     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.5e-05
                 T--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT..EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCET CS
       XPG_I   4 gipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkkkekekkkvevidlekvlkelgltreqlidlaillgcD 94 
                  i y vAp+    q+ayL  +g++da++   +D+ll+    + + +     +      +k    id  kvlk +++t+e++id+a+ +g+D
  CCD23435.1 187 DIVYQVAPYCSWIQLAYLYDNGYIDAIYGP-TDCLLLKN--IEKFIL--GMEFP----NKDFRFIDKTKVLKDFQCTHEDFIDIAMAVGND 268
                 5789999999999************99975.99999853..333333..44455....556999*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1011  (0.0563891); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5505.95
//
Query:       CCD23436.1  [L=348]
Description: hypothetical protein NDAI_0B04020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-78  263.5   1.3    2.7e-78  263.3   1.3    1.0  1  OST3_OST6     OST3 / OST6 family, transporter family
  ------ inclusion threshold ------
       0.51   10.9   7.1       0.35   11.5   0.7    2.6  2  Transmemb_17  Predicted membrane protein


Domain annotation for each model (and alignments):
>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.3   1.3   3.1e-82   2.7e-78       3     293 .]      28     338 ..      26     338 .. 0.92

  Alignments for each domain:
  == domain 1  score: 263.3 bits;  conditional E-value: 3.1e-82
   OST3_OST6   3 llklakks.ngviklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkd......ekskskklfFakvdfde...gkdvFqkl 91 
                 llk a+ks +++i+++ ++y+++l+g rd +++vl+T++spqf+C+lC e+e+e+e++++sw++d      + +++k lfFak+ ++     +++F+++
  CCD23436.1  28 LLKEARKSsDNIINVSGKDYETILSGHRDANILVLFTSNSPQFGCSLCAELESEYEALVSSWFHDhpdalsKDDSEKALFFAKAMVKSpqnIPKIFADF 126
                 556666666*************************************************************877899**********65555******** PP

   OST3_OST6  92 glnsaPhlllfppkkgpkeskkkdtydfsrggf..daealakfisertg.vkirikrppnyskiiitallvlllvlllklrrklllkilksktlwavls 187
                 g++++P+l l ++ +++    +++ +d++  ++  ++++l++ +++ t  +++++++++n+ ++iita+ v+++v+llk++   ++ +l+s+ +w+vls
  CCD23436.1 127 GIEQIPRLHLLKAGSNNM--LDSEIVDIPADKDiaRVQHLINALKSATSiTDFEVHEKVNWGSTIITAVSVFIIVFLLKKHTYIATYLLNSRLVWGVLS 223
                 *************44333..466666666655556**************************************************99************ PP

   OST3_OST6 188 lliillftsGymfnqIrgvpfvakdekggisyfaggs.qnQfgaEtqivallygllallvilLiklvprikn........akvqrvlvivllvlifllf 277
                 + +i+l+++G+mfn+Ir++ +++++++g+i+yf ++  qnQf++Etq+++++yg+la +v++L+ ++p++ +        + v++ ++i+++++++++f
  CCD23436.1 224 VSFIILMIGGHMFNKIRNTMLAGTSKNGEIIYFIPNDfQNQFAIETQAIGVVYGILATMVVTLAIGIPKLGElykgnkrrSVVEASFSILCALFVYMFF 322
                 *****************************999999888*********************************9999988877788899************ PP

   OST3_OST6 278 slllslfriKnpgYpy 293
                  +l+++f++K++gYp+
  CCD23436.1 323 AALTYVFNLKTGGYPF 338
                 ***************8 PP

>> Transmemb_17  Predicted membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.0     0.034   3.1e+02      69      93 ..     185     209 ..     179     231 .. 0.80
   2 ?   11.5   0.7   3.9e-05      0.35      40      89 ..     280     332 ..     267     341 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.034
  Transmemb_17  69 alfllltlpvllplvyllllqtyvl 93 
                   ++++++t+++++++v+ll   ty+ 
    CCD23436.1 185 WGSTIITAVSVFIIVFLLKKHTYIA 209
                   7899999999999999987777764 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.9e-05
  Transmemb_17  40 vllvlllllEvlRlylgykgNltekvpelalfllltlpvllpl...vyllllq 89 
                   + +v+ l + +++l   ykgN++ +v+e  +++l  l+v ++     y+++l+
    CCD23436.1 280 ATMVVTLAIGIPKLGELYKGNKRRSVVEASFSILCALFVYMFFaalTYVFNLK 332
                   56788899999*******************99998888776655555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2352.67
//
Query:       CCD23437.1  [L=1167]
Description: hypothetical protein NDAI_0B04030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-59  198.2   8.1    7.9e-18   64.7   0.0    4.6  4  C2        C2 domain
     0.0018   17.8   0.0     0.0047   16.4   0.0    1.7  1  SMP_LBD   Synaptotagmin-like mitochondrial-lipid-binding doma


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   8.6e-20   7.7e-16       1      97 [.     364     461 ..     364     467 .. 0.90
   2 !   13.2   0.3   9.4e-06     0.084      18      98 ..     523     601 ..     502     607 .. 0.77
   3 !   63.7   0.2   1.8e-21   1.6e-17       2      97 ..     640     734 ..     639     739 .. 0.94
   4 !   64.7   0.0   8.8e-22   7.9e-18       1      94 [.     974    1069 ..     974    1078 .. 0.93

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 8.6e-20
                 TEEEEEEEEEESSSSSST..TSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHHH CS
          C2   1 gklevtvieAknLpnkdk..kgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsgeea 97 
                 g levt+++ k++++     + s+dpy   ++ gk++akTr+++++lnPvWne++++ ++   ++ L+++++d++   kd+++G++e +l++l++++ +
  CCD23437.1 364 GVLEVTIKNVKDIKRSSSmlNISIDPYLAFEFGGKRIAKTRTVRDTLNPVWNETMYILLQS-FTDPLTISLYDKRAKLKDKVLGRIEYNLNSLHDNDSQ 461
                 5799*********8885556777**************************************.***********9999**************97665544 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 9.4e-06
                 TTSSCEEEEEEEEECEEEEEE-SCSSSSS.SEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHHHH CS
          C2  18 kkgssdpyvkvsldgkqkakTrviknsln.PvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsgeeae 98 
                   +++++yv+++++ k +  T+   + ++  +W+++++  + +  +++ ++ +++ d    d+++G+    l++l ++++++
  CCD23437.1 523 PDKKVNAYVELYVNAKLVLTTKKATSDEDtIKWSQDYEAVIMDRRKTRCKFVIKNGDD---DSIVGTSVQTLNDLIDRTQID 601
                 46789********999999999333333436***********************9777...889999999998866655554 PP

  == domain 3  score: 63.7 bits;  conditional E-value: 1.8e-21
                 EEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHHH CS
          C2   2 klevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsgeea 97 
                  ++v v +A+nL+n +k g++dpy+kv ++g +k++T++ +++lnPvW++ +++ v+  +++++++e++d ++++kd  +Gk+ +++++l +++e 
  CCD23437.1 640 VVRVFVEKATNLKNLEKIGKIDPYAKVLVNGISKGRTDTQPQTLNPVWEQAIYVAVTS-SNQRITIECMDVETVNKDRSVGKFDLKIQDLFHKDEN 734
                 57999*****************************************************.**************9**************97776655 PP

  == domain 4  score: 64.7 bits;  conditional E-value: 8.8e-22
                  TEEEEEEEEEESSSSSSTTSSCEEEEEEEE..ECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTT CS
          C2    1 gklevtvieAknLpnkdkkgssdpyvkvsl..dgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsg 94  
                  g l++  ++A+nL   d +g sdp++k ++  +++ + kT+++k++lnP+Wn + t+e+++  +++L ++V+d+d  s+dd iG  ++pls+++ +
  CCD23437.1  974 GELTILAKSAENLISADTNGYSDPFIKFYIndEDDPRWKTKIVKKTLNPTWNDSGTIEIHNRMHDRLILKVMDWDAASGDDTIGWGSVPLSKVDPE 1069
                  57899999***********************99999*****9*************************************************96654 PP

>> SMP_LBD  Synaptotagmin-like mitochondrial-lipid-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.2e-07    0.0047       1     101 [.     150     254 ..     150     309 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.2e-07
                 --B--HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTT...-GGGTTEEEEEEE--SS--EEEEEEEE-TT--TTSEEEEEEEEEEEEEEEEEEEC..C CS
     SMP_LBD   1 dteraewlnktvkhmwpficqfieklfretiepavrga...nthlstfsftkvdvgqqplringvkvytenvdkrqiildlqisfvgnceidleik..r 94 
                 d e  ewln  + + wp+i     +++ + ++  +r      t++ ++ + k  +g +p r++ vk +  n     +++d  +sf      d++ k  r
  CCD23437.1 150 DYETLEWLNTLLDKYWPIIEPNASQMVVQQVNEIIRTNpsiPTFIKALWIDKFTLGIKPPRVDRVKTFQ-NTASDVVVMDWSLSFTPHDLSDMNAKqvR 247
                 56889**************999999999999888886411146677778899**************996.6677889********99877777766223 PP

                 CTEEEEE CS
     SMP_LBD  95 yfcragv 101
                  ++  gv
  CCD23437.1 248 NYVNQGV 254
                 3444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1037  (0.0578393); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.24s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 8016.35
//
Query:       CCD23438.1  [L=702]
Description: hypothetical protein NDAI_0B04040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00013   21.3  20.8    0.00032   20.0  20.8    1.7  1  Ion_trans     Ion transport protein
  ------ inclusion threshold ------
      0.074   13.7   0.3      0.074   13.7   0.3    3.3  3  DUF2645       Protein of unknown function (DUF2645)
       0.26   11.9   3.2        0.6   10.7   3.2    1.6  1  Syntaxin-6_N  Syntaxin 6, N-terminal


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0  20.8   5.4e-08   0.00032      12     244 ..     271     499 ..     264     500 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.4e-08
                 HHHHHHHHHCCCSSSS..HHHHC....HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH..........HHHH..... CS
   Ion_trans  12 illncvflaletyfpe..delek....tileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl..........vlse..... 89 
                 il ++vfl l t   +  + + +    +++e++ ++ft  ++   + k++  g+     Y++  w ++  +   ++l s+                   
  CCD23438.1 271 ILFAVVFLILYTIVVNgkSGT-NvvplDFWEYIFYLFTLGYISSEFSKFYYIGN----AYFSF-WTCFNDTLYGIVLTSMifrfnslysfK--Ldkpge 361
                 444444444444444421222.24678***************************....88776.455544444444444433445444441..045666 PP

                 ....HHHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHH CS
   Ion_trans  90 ....esllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftall 184
                      s+ +ls    f + rll ++++ + + +l+  l++++++ + ++ lll++++ f   ++ l               + + ++++++  + + ++
  CCD23438.1 362 dydrISYRILSCAAPFVWSRLLLYLESERIVGALLVVLKHMLQQSIVFFALLLLIMLGFLQGFLGLD--------------SADGKREITMPILTNLII 446
                 6555566666666666667777777776666677777888888888888888888888877777777..............333344555566666666 PP

                 HHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 185 wlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqeltere 244
                 ++f l t++ + d +++++ +       ++  ++++++++llN+lia+ a+++qe+ e++
  CCD23438.1 447 TVFGLGTFD-MFDRFAPPYAAI------LYYGYCFIVTVILLNILIALYANAYQEVIENT 499
                 666666655.555555555555......***************************97765 PP

>> DUF2645  Protein of unknown function (DUF2645)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3       1.1   6.3e+03      57      66 ..     272     281 ..     234     311 .. 0.53
   2 ?   -1.5   0.1      0.69   4.1e+03      78      85 ..     410     417 ..     375     461 .. 0.57
   3 ?   13.7   0.3   1.2e-05     0.074      15      71 ..     512     570 ..     502     582 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.1
     DUF2645  57 llliPlllvl 66 
                 l  + +l++ 
  CCD23438.1 272 LFAVVFLILY 281
                 2222222211 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.69
     DUF2645  78 vialvill 85 
                   +l++++
  CCD23438.1 410 FALLLLIM 417
                 22222222 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 1.2e-05
     DUF2645  15 iellSildkewmidgsdiknlCsvl..relelddsrdvaviaalllliPlllvlvkkkl 71 
                 +  + + d++ ++   ++ ++C+v+  r l ++ +rd+  +++l+l +P+ll++  k +
  CCD23438.1 512 LRFIRAPDEDVFVAPLNLIEICTVPvtRLLSMEKRRDLNYLIMLILYSPMLLYVAIKEV 570
                 666778899*************975227899*******************997666554 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.2    0.0001       0.6      20      67 ..     644     693 ..     630     701 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0001
  Syntaxin-6_N  20 lyrrw.erlledtss.stseeldetrteLrkalrsiewdledLeetvriv 67 
                   + ++w +++++++ss +++ +   t+++L++ lr+ e++++dL  +++ +
    CCD23438.1 644 VSKEWyKKVQKLKSSsERTTSNGLTKEQLEARLRKTEEKISDLATSINNL 693
                   445554455566655456888888999********************744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1140  (0.0635841); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.39
# Mc/sec: 5351.52
//
Query:       CCD23439.1  [L=137]
Description: hypothetical protein NDAI_0B04050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-28   99.4   0.2    1.9e-28   99.1   0.2    1.1  1  Ras          Ras family
    2.4e-08   34.2   0.1    3.6e-08   33.6   0.1    1.3  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    3.1e-05   23.5   0.2    3.7e-05   23.3   0.2    1.1  1  Arf          ADP-ribosylation factor family
  ------ inclusion threshold ------
       0.11   12.4   0.1       0.15   12.0   0.1    1.1  1  RsgA_GTPase  RsgA GTPase


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.2   4.1e-32   1.9e-28      67     160 ..       1      98 [.       1     100 [. 0.96

  Alignments for each domain:
  == domain 1  score: 99.1 bits;  conditional E-value: 4.1e-32
                 HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG....G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  67 lyyrdaegillvyditsresfenvkkwveeikrvaeenvpivLvGnKvDlee....kravsteegeelakelglkfletSAktnenveeafeellrei 160
                 +yyr+a+++l+vyd+t+ +sf ++++wv+e++++a++++ i+LvGnK+D+ e    +r+v +eege+la+e gl f+etSAkt++n++eaf ++ ++i
  CCD23439.1   1 MYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDILEnnenERKVAREEGEKLAEEEGLLFFETSAKTATNINEAFVAIGEKI 98 
                 69***********************************************98778889***********************************999887 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.1   8.1e-12   3.6e-08      75     119 ..       1      49 [.       1      50 [. 0.84

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 8.1e-12
                 HHHCTSCEEEEEEE...GHHHHCHHHHHHHHHHHCSSS-EE.EEEE-TT CS
         Roc  75 lylreaalailvyd...srssenlkeWlkelkkvagkspvi.lvgnkiD 119
                 +y+r+a++a++vyd    +s+ ++++W+kel+++a+k+++i lvgnkiD
  CCD23439.1   1 MYYRNAQAALVVYDvtkPQSFIKARHWVKELHEQASKDIIIaLVGNKID 49 
                 7*************64333556789**********99877659*****9 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.2   8.2e-09   3.7e-05      78     172 ..       2      95 ..       1      98 [. 0.86

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 8.2e-09
                 GCTTESEEEEEEETT-CTTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHH CS
         Arf  78 YfektdavifvvDsadreRleeakeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewls 172
                 Y+++ +a + v D+++ + + +a++ +k+l +e+  k++++ +++NK+D+ e  ++e   +  + e+l  ++ l  +++sa + ++++e++  + 
  CCD23439.1   2 YYRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKIDILENNENERKVAREEGEKLAEEEGLLFFETSAKTATNINEAFVAIG 95 
                 **************************9997.5667899999999*****9988766666666666779889******************997765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.3e-05      0.15      15      92 ..       5      89 ..       3      99 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.3e-05
                 S--EEEEEEESTTTT..--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH.....HHHHHHHHHHHTTSEEEE--TTTHTTHHH CS
  RsgA_GTPase 15 Nvdqllivvslkepe..lslnlldrfLvlaeekgiepvivlnKiDlleeee.....eleelkeelealgyevllvsaktkeglee 92
                 N + +l+v  +++p+  ++ +   + L +  +k+i + +v nKiD+le++e     + ee ++  e+ g+ ++ +sakt ++++e
   CCD23439.1  5 NAQAALVVYDVTKPQsfIKARHWVKELHEQASKDIIIALVGNKIDILENNEnerkvAREEGEKLAEEEGLLFFETSAKTATNINE 89
                 6778888888888774457788889999999*****************9998787767777788888999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1129.00
//
Query:       CCD23440.1  [L=568]
Description: hypothetical protein NDAI_0B04060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-51  174.1   0.0    9.3e-51  172.9   0.0    1.5  1  PP2C      Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.9   0.0   5.2e-55   9.3e-51      20     236 ..     172     446 ..     157     462 .. 0.89

  Alignments for each domain:
  == domain 1  score: 172.9 bits;  conditional E-value: 5.2e-55
                 ECCCCTCTTCCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTH..............HHHHHHHHHHHH.HHHHHHHH........HHHH. CS
        PP2C  20 islanlesssgkssvsffavfdghggseaakyarehleeilksqksfeele..............kleqalrksfla.dtdeelks........skan. 94 
                 +++++ +ss+++++ +ff++fdgh g+ ++k+ +++l + +++q   + +               k ++a++++fl+ d d++ +s        +++n 
  CCD23440.1 172 TIPNEDQSSNDEEDLYFFGIFDGHSGTFTSKKLSQDLVRYVANQIHNSYDSittatmnglfpsstKIDNAIKSGFLKlDNDIVQESfrklfqspTNENm 270
                 44555556699999************************7777776666665667778888888889999999999999988888888889986634447 PP

                 .C.HCCT-EEEEEEEEEETTE..EEEEEESS-EEEEEETTEEE....EECS---STTSHHHHHHHHHTT--EEE..CCEEETTTBSBSB-EE-GGGTCC CS
        PP2C  95 .t.epsksGstavvalirgtk..lyvAnvGDSravLcrkgnak....keltedHkpsdedEreRIeeaggsvsn..gegrvngsLavsRalGDlelkpk 183
                  + +p  sGs+a+++++++ +  l+vA +GDSra+Lc+k++++     +l+ d+++++ +E+eRI+++++   n  ++gr++gsL+ sRa+GD+++k k
  CCD23440.1 271 iNtLPAISGSCALLTMYNSLNktLKVAVTGDSRALLCGKDENGnwtvESLSIDQTGDNVREVERIRNLHPNEPNviRNGRILGSLQPSRAFGDYRYKVK 369
                 966***************99999**************************************************************************99 PP

                 CC........................CCSTSB---EEEEEEE-TTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHT CS
        PP2C 184 et........................eeqlvsaePdvtsvklteedefliLacdGlwdvlsdqeavdlvrdelekkk 236
                 e+                        ++++v+aeP++t++k+t++++f++L++dGl+++l++++++ lv +++e+++
  CCD23440.1 370 EVdgkqlselpdhvkiyfrkeprdflTPPYVTAEPEITTTKITDKTKFMVLGSDGLFELLTNEQVAGLVVRWMESNN 446
                 99************************************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4598.75
//
Query:       CCD23441.1  [L=179]
Description: hypothetical protein NDAI_0B04070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00097   19.1   0.0     0.0011   19.0   0.0    1.1  1  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
  ------ inclusion threshold ------
      0.014   15.3   0.2      0.035   14.0   0.0    1.6  2  Clathrin_H_link  Clathrin-H-link
      0.079   12.9   0.0       0.16   11.9   0.0    1.5  1  MgrB             MgrB protein


Domain annotation for each model (and alignments):
>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.8e-07    0.0011      18     108 ..       7      99 ..       5     148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.8e-07
  UBA_e1_thiolCys  18 lFekkpeevnkfl.kdkekfleelekekeeekletlekvlkllvkerpktfedCvkwArekfe.klFnnkikqLlynfPkdsktsdGapFWsg 108
                      +F++ ++ + +f+ ++ ++f +++++ +++e+++ + +++k l+++ +  + ++ + A ++   + + ++i++L+++fP+++++s  + F + 
       CCD23441.1   7 YFNSGCNLTGNFMcDQGKAFESAIREGHGKEAITCVTHLSKNLIRNAKGRVIEAFQAATHTLDpQVYGESINELIKKFPENKRNSGNSTFKKL 99 
                      56666666777774555666666777777777999************************9997478****************99988888554 PP

>> Clathrin_H_link  Clathrin-H-link
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.9e-06     0.035      11      52 ..      24      67 ..      22      72 .. 0.89
   2 ?   -2.9   0.0       1.1   6.7e+03      45      57 ..      95     107 ..      94     109 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.9e-06
  Clathrin_H_link 11 qqFeqllaqgnykeAakvAaespqgiLRtpe..tIqrfkqvpaq 52
                     + Fe+ +++g  keA++++    ++++R+++  +I+ f++++++
       CCD23441.1 24 KAFESAIREGHGKEAITCVTHLSKNLIRNAKgrVIEAFQAATHT 67
                     67***************************96559*****99765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.1
  Clathrin_H_link  45 rfkqvpaqpgqls 57 
                      +fk+++++p + s
       CCD23441.1  95 TFKKLTQSPRSFS 107
                      6888888887655 PP

>> MgrB  MgrB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.7e-05      0.16       7      20 ..      17      30 ..      14      31 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.7e-05
        MgrB  7 dsyCDQgeqFfsGI 20
                + +CDQg  F+s I
  CCD23441.1 17 NFMCDQGKAFESAI 30
                88*********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1339.67
//
Query:       CCD23442.1  [L=166]
Description: hypothetical protein NDAI_0B04080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1276.44
//
Query:       CCD23443.1  [L=648]
Description: hypothetical protein NDAI_0B04090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-32  112.9   0.0      4e-32  111.1   0.0    1.8  1  Mem_trans  Membrane transport protein


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0   2.2e-36     4e-32       3     327 ..      13     563 ..      11     606 .. 0.91

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 2.2e-36
   Mem_trans   3 leavvplyvimllgYgsvkwvkiftpdqcsginrfVvlfavPllifhfisqnnpyemllrfiladvlvklivlillllgallskifkgslewtitlfsl 101
                 +++++++y+i+  g++ +k  +i+t ++++ i+++V+ + +P+l+f++i+ n   + + ++ ++   +++ ++++l + +l+ k++  +++w   +++ 
  CCD23443.1  13 VKPIIKIYLIIGTGFLLSKM-NILTSEATRTISDVVLTILLPCLSFNKIVANIEDNDIKQVGIICLTSVILFATGLGFAFLVRKFLPVPKQWYGGILAG 110
                 789*****************.****************************************************************************** PP

   Mem_trans 102 stlpNtlvlgipllkalyge.........ygvslmvqvvvlqciiiytlll.....flfeyrgaklliseefpdtaasivsikvdsdvvsldgrkplet 186
                   +pN+  l+i+ ++ + +          +gv+ ++++  +  i +  l+      + f+y  +++ i+e+++++  +i+  ++d+d  s+  +k ++ 
  CCD23443.1 111 GMFPNISDLPIAYIQTMDQGfiftptegdKGVANVIIFLAMFLICVFNLGGfrlieNDFKYNDEENAIMESEEEENSNIDVGQEDADSHSSTLSKGSHA 209
                 *****************9999999*99998888888887766666666655777778899******************************999995555 PP

   Mem_trans 187 eaei.kedgklhvtvrksnasrsdivs.....sstprpsnltnaeiyslq................................................. 230
                  +e  ++d   h++ +k+ ++++++       sst     +++  i   +                                                 
  CCD23443.1 210 KTESsEDDDPTHLNEKKNHDENQEKNNgdsstSSTTATHSQVGNSIAENNkskdsipkrihsatipeeqeeenedvssetssvvtsidshinnssildn 308
                 555405667789998888888887777887776666666666666666668889********************************************* PP

   Mem_trans 231 ................................................................................................... 230
                                                                                                                    
  CCD23443.1 309 mnftksrrtasqpvaftsrsssvsgmgihaykttshqsirsidhrslpaqdmndlineysnvdqfgnkrsntalsldsnnvrnpydspveqpiartqta 407
                 *************************************************************************************************** PP

   Mem_trans 231 ........................................mtrlilimvlrklirnPntyssllglilslvsfkwnvimp.................ki 272
                                                         + +  li++ +k  + P  ++++++li++ +++ + ++ +                 ++
  CCD23443.1 408 qsriekirssnltriltsdatvskkdieesgsslpkwlqkFPLTSLIVFFVKNCLRPCSMAVIIALIIAFIPWVKALFVTtattpnikqapdeqpalSF 506
                 ****************************************9999999*****************************9999******************* PP

   Mem_trans 273 iqksisilgdaglpmalfslGlfLal.qpkkiacgnsvatfa.lavRlilgPlvmlv 327
                 i++     g a++p  l+ lG++L + +  k+  g+ ++++  +++R  ++P+++++
  CCD23443.1 507 IMDFTAYVGAASVPFGLILLGATLGKlKIGKLYPGFWKSAILlIFLRQCIMPIFGVL 563
                 ************************861445666666655554699999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1821  (0.101567); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 4536.38
//
Query:       CCD23444.1  [L=1732]
Description: hypothetical protein NDAI_0B04100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-36  124.1   0.0    1.2e-12   47.2   0.0    5.1  5  AMP-binding   AMP-binding enzyme
    3.8e-14   53.4   2.1    3.8e-14   53.4   2.1    3.2  4  DMAP_binding  DMAP1-binding Domain
  ------ inclusion threshold ------
      0.052   13.4   0.2       0.24   11.3   0.2    2.1  1  OHA           OST-HTH Associated domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0     2e-16   1.2e-12       6     192 ..     248     438 ..     243     463 .. 0.82
   2 !   21.9   0.0   9.7e-09   5.8e-05     330     389 ..     666     725 ..     652     736 .. 0.82
   3 !   22.2   0.0   7.6e-09   4.6e-05      21     103 ..    1103    1191 ..    1084    1231 .. 0.71
   4 !    3.8   0.0    0.0029        17     177     270 ..    1272    1364 ..    1271    1437 .. 0.78
   5 !   21.8   0.0     1e-08     6e-05     333     422 ..    1487    1590 ..    1466    1591 .. 0.77

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 2e-16
                  HHSTTSEEEEE...CCSTEEEEHHHHHHHHHHHHHHHH..HTTSSTT-EEEEEE..SSSHHHHHHHHHHHHTT-EEEEEET.TS-HHHHHHHHHHHTE CS
  AMP-binding   6 aktpdkvalvd...sgegqtlTYreldervnrlAagLr..slGvkkgdrVaill..pnspewvvallailkaGavvvplnp.tltaeelayiledsea 95 
                  +++ d  a+++   +g+ + +++  l+ r++++A+ L   +  + k d++++++  +  +e+ va+l+++ aG+v+vp++  t++  e+  i++ +++
   CCD23444.1 248 ENNNDENAMISlnsKGKETFISWDKLYLRAEKVANELNnsKNKLYKMDKILLWYnkDEIIEFAVAILGCFIAGMVAVPISFeTYSLGEIIEIIKLTNS 345
                  56778888888888889999******************844577*********933468********************8669*************** PP

                  SEEEETCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHHHHHHHHHHH CS
  AMP-binding  96 kvliatvdselleklleaaakleavklvivldadellkeeelkeeeeseekaekpeeeeelkpddlayiiYTSGTTGkPKGVmlshrnlvanvaslk 192
                  k+++  +++e+ ++l++ ++++   +++ ++++d +++ + lk+++    ++  ++ ++  +  ++ yi +T    G+  GV+++h+ l+++ + l+
   CCD23444.1 346 KFIL--ISNECYKQLDNLHSTQN-NTKIKLIKNDFFQQINFLKTDDLGTYSKA-KKSSPVYDIPNISYIEFTRTPLGRLSGVVMKHKTLITQFQILS 438
                  ****..99999888888877654.55555688899999888888887777763.43555677899*************************9966544 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 9.7e-09
                  TTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHE CS
  AMP-binding 330 eedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeaf 389
                   +d +k  + G+p+pg+ + +v+++++ +v d ++Ge++v++++++  +++ ++ +  +f
   CCD23444.1 666 FKDYSKFETFGFPIPGTMLCVVNPDDNTLVSDLNVGEIWVSSKNLTDEFYQMDKVNDFVF 725
                  45667899******************************************9876666555 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 7.6e-09
                   EEEEHHHHHHHHHHHHHHHH..HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEET......TS-HHHHHHHHHHHTESEEEETCT CS
  AMP-binding   21 qtlTYreldervnrlAagLr..slGvkkgdrVaillpnspewvvallailkaGavvvplnp......tltaeelayiledseakvliatvd 103 
                   ++++++ +d  v ++ + +   +  +k+gdrV i+++ns+e+v++++a+++ + v++pl        +   e l+ i+++ ++k ++  +d
   CCD23444.1 1103 KKVSWKAFDLIVASFLKKIVgsKVPLKNGDRVIIMCDNSVEYVAMVMACMYCNFVIIPLPIfdenniEEEFEFLKTIIKSYKVKRMF--ID 1191
                   556666666655555555553223469*****************************9986544432222225566777777777777..43 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.0029
                   EEEEHHHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHHC CS
  AMP-binding  177 VmlshrnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvlealles 270 
                   V ++h  l++n++ l  +++ +l+ d  ++s  +     g+i ++ll +++G+t  l++ ++  +dpk +l  +++l+v  +++    ++ +le+
   CCD23444.1 1272 VSMTHHILMNNCKIL--KETLQLSTDAPIFSLCSHTTGPGFIHSCLLGIYVGSTTNLFSISNVmTDPKDFLFGLQNLNVKNLYLDMKTFRIILEK 1364
                   678999999998876..5666676677777777777777799********************988899999999999999999888888888663 PP

  == domain 5  score: 21.8 bits;  conditional E-value: 1e-08
                   CTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEE.................TCC.EEEEEEEEEEETTSEE CS
  AMP-binding  333 kkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafds.................egr.wlrTGDlgrldedGyl 410 
                    ++++  G +  +++v +v++et+  + dge Ge++  ++g++  Y+  +e++++  ++                 +   +lrTGDlg++    ++
   CCD23444.1 1487 YVRIQDSGIVPVCTDVSVVNPETLLQCYDGEFGEIWCCSEGNAFNYYICDEENNKLSKDpfiteqfkskfkkdvddG-LtYLRTGDLGFIK---NV 1578
                   456666777767*****************************999999754554444333455578888888888632.35*********98...77 PP

                   EEEEECCCEEEE CS
  AMP-binding  411 eivgRkkdlikl 422 
                    + +   dli+l
   CCD23444.1 1579 SVPDSQGDLINL 1590
                   777777777765 PP

>> DMAP_binding  DMAP1-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   2.1   6.3e-18   3.8e-14       2      66 ..       6      79 ..       5     117 .. 0.70
   2 ?   -3.9   0.9         3   1.8e+04      61      73 ..     148     160 ..     129     192 .. 0.47
   3 ?   -2.8   0.1       1.8   1.1e+04      32      49 ..     450     467 ..     424     478 .. 0.69
   4 ?   -1.0   0.8      0.53   3.2e+03      61     107 ..     811     856 ..     792     860 .. 0.58

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 6.3e-18
  DMAP_binding  2 sssLPkdvrerLaeLeldlseGdiTeKgyekkklkLLreFlp.......nslkae..nqa.ap.esklsaeakqql 66
                  ++ LP ++++rL+eL++d++e+++T+Kgye+k+l++L+++ +       +s+  +  n++ ++ ++ +++ a+ ++
    CCD23444.1  6 PANLPIELQNRLNELIQDYKEENLTRKGYETKRLQILEQYGIrktayqyQSK--NgrNSTiKSsSTLRMSPANGNN 79
                  678**************************************97766533222..2334444442333333222222 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3
  DMAP_binding  61 eakqqlasletkl 73 
                    + +++ ++++++
    CCD23444.1 148 SNSSRRHKRKSST 160
                   2222222222222 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.8
  DMAP_binding  32 kkklkLLreFlpnslkae 49 
                   kkk+ ++r++  ++++ +
    CCD23444.1 450 KKKNHIMRPYDKKPAHRT 467
                   788888888874333333 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.53
  DMAP_binding  61 eakqqlasletklrdeelssevytekvqaalakekerkmalnmptke 107
                   + ++ ++++++++ + e  s + t ++ + ++k  er+     p k+
    CCD23444.1 811 DLNKAKKNRTSSS-KHESNSTIDTINMDSDSNKDIEREDENIKPMKR 856
                   3333333444433.334556677777777777777776665555555 PP

>> OHA  OST-HTH Associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   3.9e-05      0.24      27      54 ..     327     354 ..     324     376 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.9e-05
         OHA  27 fLrglsLGelchiVqlainkkiliyenn 54 
                  ++++sLGe++ i+ l+ +k ili + +
  CCD23444.1 327 SFETYSLGEIIEIIKLTNSKFILISNEC 354
                 699********************94443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.27s 00:00:01.19 Elapsed: 00:00:00.44
# Mc/sec: 11749.57
//
Query:       CCD23445.1  [L=181]
Description: hypothetical protein NDAI_0B04110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-71  238.7   0.5    2.9e-71  238.5   0.5    1.0  1  Arf        ADP-ribosylation factor family
    1.3e-16   60.6   0.0    1.6e-16   60.3   0.0    1.1  1  SRPRB      Signal recognition particle receptor beta subunit
    2.7e-15   56.6   0.1    3.9e-15   56.1   0.1    1.2  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    3.3e-13   49.5   1.7    9.9e-09   34.8   0.1    2.2  2  G-alpha    G-protein alpha subunit
    6.6e-13   48.6   0.0    7.4e-13   48.4   0.0    1.1  1  Ras        Ras family
    4.2e-10   39.4   0.0    5.3e-10   39.0   0.0    1.1  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
    5.2e-06   26.5   0.1    7.9e-06   25.9   0.1    1.4  1  MMR_HSR1   50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.029   13.7   0.2      0.061   12.6   0.2    1.5  1  6PF2K      6-phosphofructo-2-kinase
        0.4   10.7   1.7        3.4    7.7   0.1    2.2  2  AAA_14     AAA domain


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.5   0.5   1.5e-74   2.9e-71       2     174 ..       6     177 ..       5     178 .. 0.97

  Alignments for each domain:
  == domain 1  score: 238.5 bits;  conditional E-value: 1.5e-74
                 HHHHHGGTT.TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHH CS
         Arf   2 lsilaklklkkkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleea 100
                 ++ l +l++ ++e++il+lGLDnaGKtTil+klkl++++t +PT+gfnve++++kn+kf++wDvGGq +lRplW++Yf++t+a+ifv+Ds+d +Rl ea
  CCD23445.1   6 SKTLGRLFG-SREMKILMLGLDNAGKTTILYKLKLNKIKTSTPTVGFNVETVKYKNVKFNMWDVGGQARLRPLWRHYFPATTALIFVIDSNDDDRLIEA 103
                 567888999.9**************************************************************************************** PP

                 HHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGG.SSSSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 101 keeLkalleeeelkevallvlaNKqDlpealseeelrellglee.lkgkrkleiqkcsavkgeglkeglewlses 174
                 keeL ++++e+e+++v+llv+aNKqDl++a + +e++e l+l++ lk ++++++++++a++g+gl egl+w+s++
  CCD23445.1 104 KEELYSIISEKEMEDVVLLVWANKQDLKNAKKPQEISEFLELDRnLK-NQQWCVIGSNALTGQGLVEGLSWISNN 177
                 ******************************************97577.************************997 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   7.8e-20   1.6e-16       3     139 ..      17     145 ..      15     154 .. 0.86

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 7.8e-20
                 --EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHH CS
       SRPRB   3 kpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAElly 100
                 + ++l++Gl ++GKT+++ +L  +++k++   +  +  + k+   k+ k+++ D+ G+ +lr    ++        +l+fv+DS  d++   e  E ly
  CCD23445.1  17 EMKILMLGLDNAGKTTILYKLKLNKIKTSTPTVgFNVETVKY---KNVKFNMWDVGGQARLRPLWRHY---FPATTALIFVIDSNDDDRL-IEAKEELY 108
                 6789******************99988777777689999999...99***************755544...667889*******988775.5677889* PP

                 HHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHHHH CS
       SRPRB 101 eilliteklkdavdiliACnKqelflakspklikdaLEk 139
                 +i++++e   + v +l+  nKq+l  ak+p+ i + LE 
  CCD23445.1 109 SIISEKE--MEDVVLLVWANKQDLKNAKKPQEISEFLEL 145
                 **99988..788899999*****************9995 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.1   1.9e-18   3.9e-15       1     119 [.      19     129 ..      19     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.9e-18
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCH.... CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenl.... 95 
                 K++++G  ++GKt++l ++  +k++ ++++t+g ++ t +             k+vk+n+WD++Gq r r l ++y+ +  ++i+v+ds+++++l    
  CCD23445.1  19 KILMLGLDNAGKTTILYKLKLNKIK-TSTPTVGFNVETVK------------YKNVKFNMWDVGGQARLRPLWRHYFPATTALIFVIDSNDDDRLieak 104
                 9*******************99996.5689***9996543............35689*******************************88775432222 PP

                 HHHHHHHHHHCSSS-EEEE.EE-TT CS
         Roc  96 keWlkelkkvagkspvilv.gnkiD 119
                 +e ++ ++++  +++v+lv +nk D
  CCD23445.1 105 EELYSIISEKEMEDVVLLVwANKQD 129
                 6778888888778877766269998 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   4.7e-06    0.0093      21      47 ..      15      41 ..       2      46 .. 0.82
   2 !   34.8   0.1     5e-12   9.9e-09     182     281 ..      42     130 ..      40     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.7e-06
                ..EEEEEEEESTTSSHHHHHHHHHHHC CS
     G-alpha 21 krevkllllGqseSGKsTilkqlklly 47
                +re+k+l+lG +  GK+Til +lkl +
  CCD23445.1 15 SREMKILMLGLDNAGKTTILYKLKLNK 41
                5799******************99654 PP

  == domain 2  score: 34.8 bits;  conditional E-value: 5e-12
                 HCS-----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HH CS
     G-alpha 182 lkarlktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlD 280
                 +k++++tvG++  +++++ +++f+++dvgGq   r+ W ++f  ++a+iF++            +   rl e+ +   +i+++k+++++ +++  nK D
  CCD23445.1  42 IKTSTPTVGFNVETVKYK-NVKFNMWDVGGQARLRPLWRHYFPATTALIFVIDS----------NDDDRLIEAKEELYSIISEKEMEDVVLLVWANKQD 129
                 678899***********9.********************************873..........33356777777777777777777777777777777 PP

                 H CS
     G-alpha 281 i 281
                 +
  CCD23445.1 130 L 130
                 6 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   3.7e-16   7.4e-13       1     121 [.      19     135 ..      19     169 .. 0.86

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 3.7e-16
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeik 98 
                 K++++G  + GKt++l++   +k k++ ++T+g++  t    v+ k+vk+++wD  Gq + + l + y+  +++++ v d ++ + + ++k ++++ i+
  CCD23445.1  19 KILMLGLDNAGKTTILYKLKLNKIKTS-TPTVGFNVET----VKYKNVKFNMWDVGGQARLRPLWRHYFPATTALIFVIDSNDDDRLIEAKeELYSIIS 112
                 899******************998765.89**876653....55689******************************************9967777777 PP

                 HHSTTTSEEEEEEETTTGGGG-S CS
         Ras  99 rvaeenvpivLvGnKvDleekra 121
                 ++  e+v++++ +nK Dl++ ++
  CCD23445.1 113 EKEMEDVVLLVWANKQDLKNAKK 135
                 777799*************9443 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   2.7e-13   5.3e-10       1     133 [.      19     140 ..      19     156 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 2.7e-13
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.leedletl 98 
                 k+L++G  ++GKt++      ++  + + + + t+  + ++v+ ++n+++n+wD+gGq ++          + f    +li+V+D+++++ l e+ e+l
  CCD23445.1  19 KILMLGLDNAGKTTI----LYKLKLNKIKTSTPTVGFNVETVK-YKNVKFNMWDVGGQARLRPL-----WRHYFPATTALIFVIDSNDDDrLIEAKEEL 107
                 89***********85....4577888888889999999999*6.89************998665.....5899**************987688999999 PP

   Gtr1_RagA  99 keilealrqyspeakvfvlihKmDliqedereeif 133
                  +i+++  +  +++ + v  +K Dl + ++ +ei 
  CCD23445.1 108 YSIISE--KEMEDVVLLVWANKQDLKNAKKPQEIS 140
                 999885..556778888889999998877766665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1     4e-09   7.9e-06       2     106 ..      20     117 ..      19     157 .. 0.65

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 4e-09
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldeelee 99 
                 ++ +G  N+GK+t++ +l  +k ++ ++p  T   n ++vk+k+ +++++D+ G    a+ +  l +++     + ++++v+d++ ++ l + +eel +
  CCD23445.1  20 ILMLGLDNAGKTTILYKLKLNKIKT-STP--TVGFNVETVKYKNVKFNMWDVGGQ---ARLR-PLWRHYFP--ATTALIFVIDSNdDDRLIEAKEELYS 109
                 7899**************7665544.344..556666666666999********2...2222.34444443..34678888885542245555566666 PP

                 HHHH.TTS CS
    MMR_HSR1 100 llee.akk 106
                 +++e +++
  CCD23445.1 110 IISEkEME 117
                 65443222 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   3.1e-05     0.061      10      58 ..      14      62 ..       6      69 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.1e-05
                ..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHS CS
       6PF2K 10 knsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreask 58
                 ++++ i+++GL   gKt+i  kl      ++++t  Fnv  ++ + +k
  CCD23445.1 14 GSREMKILMLGLDNAGKTTILYKLKLNKIKTSTPTVGFNVETVKYKNVK 62
                567788******************988779999*******998877665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0017       3.4       5      46 ..      20      61 ..      16      73 .. 0.78
   2 ?    2.4   0.1     0.075   1.5e+02      35     102 ..      91     161 ..      72     168 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0017
      AAA_14  5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkl 46
                +++ G+  +GKTt+l++l  +++ ++  ++ +n+++ ++k+ 
  CCD23445.1 20 ILMLGLDNAGKTTILYKLKLNKIKTSTPTVGFNVETVKYKNV 61
                466788999*********878777777788888887777654 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.075
      AAA_14  35 yinldderdkkladpekllelileklkeekktylflDEiqevpewek..alkslvd..eg.knldvivtGSns 102
                  i+ +d++   +a +e+l+++i ek +e +  +l+    q +++++k   + ++++  ++ kn + +v GSn+
  CCD23445.1  91 VIDSNDDDRLIEA-KEELYSIISEKEME-DVVLLVWANKQDLKNAKKpqEISEFLEldRNlKNQQWCVIGSNA 161
                 4443333333233.33577777776444.44445444555554443211344444432223455666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1372.91
//
Query:       CCD23446.1  [L=255]
Description: hypothetical protein NDAI_0B04120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-60  204.3   0.0    1.3e-60  203.9   0.0    1.1  1  Rib_5-P_isom_A  Ribose 5-phosphate isomerase A (phosphoribois
  ------ inclusion threshold ------
       0.03   14.2   0.0        2.1    8.3   0.0    2.2  2  DeoRC           DeoR C terminal sensor domain


Domain annotation for each model (and alignments):
>> Rib_5-P_isom_A  Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.9   0.0   1.4e-64   1.3e-60       2     173 .]      72     248 ..      71     248 .. 0.95

  Alignments for each domain:
  == domain 1  score: 203.9 bits;  conditional E-value: 1.4e-64
                     EEESSHHHHHHHHHTT--BE-GGCCSSEEEEEE--SEEETTS-EE--TTS-HHHHHHHHHTEEEEEEEEEGGGBESS.TT.S..S-EEEEE-GGG CS
  Rib_5-P_isom_A   2 gvptSeqteelaeelgipllsldeveeidlaiDGaDevdedlnliKGgGgallrEKivaaaakkfiviadesKlvek.lg.k..fpvPveVlpfa 92 
                     ++pt++q+++l+ ++g++l++++ ++++d+a+DGaDevd +l+liKGgGg+l++EK+v ++akkfi++ad++K ++k lg +  + vP+eV+p a
      CCD23446.1  72 CIPTGFQSKKLILDNGLQLSNMELYSQLDIAFDGADEVDYNLQLIKGGGGCLFQEKLVSSNAKKFIIVADYRKKSPKyLGtNwvQGVPIEVVPSA 166
                     9****************************************************************************9**65999********** PP

                     HHHHHHHHHHTTT-EE.EE-TETT.TTEE-B-TTS-EEEEEESSSBSSSHHHHHHHHHTSTTEEEESEE-S--SEEEEEETTC CS
  Rib_5-P_isom_A  93 leavarelekllggkp.elReakg.kdgpvvTdngnlilDvkfeekiedpeelekelksipGVvetGlFlgladkvlvgkedg 173
                     + +v++ le++lg+k  +lRe kg k+gpvvTdn+n+i+D++f ++iedp++l+k++k ++GV+etGlF++ a+kv++g+edg
      CCD23446.1 167 YVSVCKDLENKLGAKKaVLRECKGgKAGPVVTDNNNFIIDADF-GTIEDPKQLHKDIKLLVGVIETGLFIDNAAKVYFGNEDG 248
                     *********888865449**996669*****************.6788*********************************97 PP

>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0   0.00024       2.1       4      39 ..      17      55 ..      15      59 .. 0.81
   2 ?    3.6   0.0    0.0062        56      92     138 ..      98     144 ..      70     150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00024
       DeoRC  4 eeKrrIAkaAael...iedgdtifldaGtTtlelaraLa 39
                e+Kr+ A +A++     e++++i +++G+T+ ++a++L 
  CCD23446.1 17 EAKRKAAYRAIDEnidFENHKIIGIGSGSTVVYVAERLG 55
                67888888887754446899****************996 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0062
       DeoRC  92 nvdkaflgangidaegglttsdeeeaevkralieaarrvillaDssK 138
                 ++d+af ga+ +d + +l++        ++ + ++a++ i++aD  K
  CCD23446.1  98 QLDIAFDGADEVDYNLQLIKGGGGCLFQEKLVSSNAKKFIIVADYRK 144
                 578999999999999999999999999999**************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.46
# Mc/sec: 1665.64
//
Query:       CCD23447.1  [L=62]
Description: hypothetical protein NDAI_0B04130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-21   77.1   0.2    1.5e-21   77.0   0.2    1.0  1  Ribosomal_S7e  Ribosomal protein S7e


Domain annotation for each model (and alignments):
>> Ribosomal_S7e  Ribosomal protein S7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.2   8.5e-26   1.5e-21     126     183 ..       1      58 [.       1      59 [. 0.98

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 8.5e-26
                    HCTTS-EEEEEEEE-SSS-EEEEEEEESCTCCCHHHHHHHHHHHHHHHHS-BEEEEEE CS
  Ribosomal_S7e 126 lvyPseivGkrirvrldgskllkvfLdkkdqnnveekldtfsavykkLtgkdvvFefp 183
                    +v+P+eivGkr+r+ + g+k+ kv+L  kd +++++kl++f+avy+kLtgk++vFe+p
     CCD23447.1   1 MVFPTEIVGKRVRYLVGGNKIQKVLLSAKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 58 
                    79******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 481.20
//
Query:       CCD23448.1  [L=179]
Description: hypothetical protein NDAI_0B04140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1360.54
//
Query:       CCD23449.1  [L=1089]
Description: hypothetical protein NDAI_0B04150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-05   24.6  21.5    3.4e-05   24.6  21.5   10.2  9  Nucleoporin_FG  Nucleoporin FG repeat region


Domain annotation for each model (and alignments):
>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.1   7.3         1   1.8e+04      58      58 ..     412     412 ..     319     439 .. 0.59
   2 ?    0.0  14.1     0.089   1.6e+03      10      83 ..     470     546 ..     460     553 .. 0.64
   3 ?    0.4  16.9     0.065   1.2e+03      22      86 ..     548     610 ..     538     616 .. 0.70
   4 ?   -2.2   7.7      0.42   7.6e+03       3      66 ..     635     667 ..     613     707 .. 0.52
   5 ?    1.5  24.9      0.03   5.4e+02       6      86 ..     705     791 ..     701     799 .. 0.77
   6 !    3.4  12.6    0.0078   1.4e+02      24      83 ..     792     849 ..     787     857 .. 0.56
   7 !   24.6  21.5   1.9e-09   3.4e-05       6      77 ..     864     938 ..     855     941 .. 0.70
   8 !   11.5  13.0   2.4e-05      0.43      13      79 ..     940    1006 ..     937    1013 .. 0.78
   9 ?   -6.0  26.9         1   1.8e+04       6      81 ..     976    1048 ..     975    1082 .. 0.76

  Alignments for each domain:
  == domain 1  score: -6.1 bits;  conditional E-value: 1
  Nucleoporin_FG  58 F 58 
                     F
      CCD23449.1 412 F 412
                     1 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.089
  Nucleoporin_FG  10 tsgglFGststt.......atstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqq 83 
                     t    FG+++++       +++ +  FG ++++  +  ++ +  + s++++++  FG+t++  +++  +  F s  ++ ++
      CCD23449.1 470 TPIFSFGTSKSAttakedqQKKPTFNFG-TKPPIDNDPKA-AVTT-SEQSKPSFSFGATKSPDAAK-PSFTFSSLPTNDTS 546
                     3335566666556667766777788888.44444444444.3333.688999999****9998875.56669988877755 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.065
  Nucleoporin_FG  22 atstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta..tgglFGstaataqqtts 86 
                     + + +  FG  sta+++ +++ ++   ++++a++  FGst+a++ +++   + +F  +++t++++++
      CCD23449.1 548 SVKPAFSFG--STAAKKDTTTDSTS--AAANAPSFSFGSTPANKHSATtiEKPFFSFKSTTTTAAQT 610
                     567788999..44444444442333..589999********99999888999999988888876443 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.42
  Nucleoporin_FG   3 FGaaatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattq 66 
                     FG  +tst+     +t++++++ +  FG                              ++ t++
      CCD23449.1 635 FG--TTSTAPESKEATTAATAKPTFSFG-----------------------------VSKPTET 667
                     44..222222222233333455556666.............................4333332 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.03
  Nucleoporin_FG   6 aatstsgglFGststt.atstgglFGasstatatasggglfgat..sqtaasgglFGstnattqtta.tgglFGstaataqq..tts 86 
                     ++ ++ +  FG++stt  ++ +  F + ++a++ + ++  +g+t  s ++++++l  +++att+t + t+glF s+++t+    tt+
      CCD23449.1 705 SSVAKPTFSFGKQSTTeGAKPSFSFSKPTEANTVPPSAATTGTTgfSFNKTTNPLLDANKATTTTVTpTTGLFSSKSNTNPLisTTT 791
                     556778899*******888888888855555555555557777788999*******999999999999*******999996586333 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.0078
  Nucleoporin_FG  24 stgglFGasstatatasggglfgatsqtaasgglFGstnattqttatggl.FGstaataqq 83 
                     +++  F     ++ + +g++++ +++ ++++g +FG++++++q+ ++ ++ FG+ta+t+++
      CCD23449.1 792 TSKPSFS--F-KNPSLAGKSSTASPNLSPSPGFAFGKPAEEAQQPTKPSFsFGATASTTNN 849
                     3344444..1.11112222233444677777888888888888877666668888777755 PP

  == domain 7  score: 24.6 bits;  conditional E-value: 1.9e-09
  Nucleoporin_FG   6 aatstsgglFGststtatstgglFGasstatatasggglfgat...sqtaasgglFGstnattqtta..tgglFGst 77 
                     +at ++++lFG+ts+ ++++g++F    t++ ++s  g+fg++   ++ta++++lFG+tn   +t++  +g+lFG++
      CCD23449.1 864 SATGSQTSLFGQTSAPPSTAGSTFT--FTNKPSTSPVGAFGSNnplQTTASGTSLFGNTNPLISTNQqpSGSLFGNK 938
                     5677778888888888777788887..55555555556788888888888888888888876666666688888876 PP

  == domain 8  score: 11.5 bits;  conditional E-value: 2.4e-05
  Nucleoporin_FG   13 glFGststt.atstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaa 79  
                       +FG+ +++ +++++++FG++++ +++++g+++  + s++a+s+g+FG+ + +  + +++  FG+  +
      CCD23449.1  940 PVFGGVTANqQPPSSSVFGNTNPLQNPTTGAKIPPS-SASASSSGMFGNMQPSGFSMNQNAGFGTRPN 1006
                      67988888779999*****76666666666666655.899***********99998888888997655 PP

  == domain 9  score: -6.0 bits;  conditional E-value: 1
  Nucleoporin_FG    6 aatstsgglFGststt..atstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta..tgglFGstaata 81  
                      +a+++s+g+FG+ + +  + +++  FG    +  +  g+++f +   + ++++ FG+++a++ t++  +++ F  +++++
      CCD23449.1  976 SASASSSGMFGNMQPSgfSMNQNAGFG----TRPNMMGSSVFNS---NLSQQNPFGGNAANQLTNQpqSQSTFNPSTTAN 1048
                      567889999999999999888888999....5666666678876...677777888887777776666888887555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1089 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 7147.47
//
Query:       CCD23450.1  [L=397]
Description: hypothetical protein NDAI_0B04160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.7e-130  434.4  11.5   3.3e-130  434.1  11.5    1.0  1  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  434.1  11.5  1.8e-134  3.3e-130      34     325 .]      57     346 ..      35     346 .. 0.92

  Alignments for each domain:
  == domain 1  score: 434.1 bits;  conditional E-value: 1.8e-134
  Glyco_transf_15  34 stlefkpkslvnrgrkPie.denenAtllalvrnselakilrsikkvekrFnkkfnYpyvfindepftekfkekieklveeadvefgeipkeew 126
                       + ++k +++    + P     + +At+++l+rns+l+++l+sik+ve+rFn+kf+Y++vf+nde+f+++fk+ ++ +v+ + +++g++p+e+w
       CCD23450.1  57 GQNGYKYEKV----SYPKYtGPKVKATFVTLARNSDLYSLLESIKSVEDRFNHKFQYDWVFLNDEEFSDEFKNVTTAMVS-GTTKYGLVPAEHW 145
                      3333433333....3343323456********************************************************.************* PP

  Glyco_transf_15 127 syPefideekaakareelad..iaygdsesyrhmcRyysGlfykhellkkydyYwRvePdiklycdieyDvfkymkdekkiygFtlslkeieet 218
                      s+P +id+e+aak+r+e+    i+ygds syrhmcR++sG+fy+h+l+++yd+YwRvePdikl+cdi+yD+fk+m d++k+ygFt+s++e+ +t
       CCD23450.1 146 SFPPWIDQERAAKVRDEMRAkkIIYGDSISYRHMCRFESGFFYRHPLMDDYDWYWRVEPDIKLHCDIDYDIFKFMADNGKKYGFTISIHEYMDT 239
                      *****************98778************************************************************************ PP

  Glyco_transf_15 219 iktlWdstkkflkenkefieeknslsflsdddqdtynlCeFwsnfeigdldffrseayekfFeylDskGgffYerWgdapvhsiavslllpkdk 312
                      i+tlWd+tk+f+k+++e+++++n+++f+sdd++++yn C+Fwsnfei++ldf+r++ay+++F+ylD++GgffYerWgdapvhsia++l+l++++
       CCD23450.1 240 IPTLWDTTKEFMKRHPEHVHKNNMMNFVSDDNGESYNSCHFWSNFEIASLDFWRGPAYTEYFDYLDKAGGFFYERWGDAPVHSIAAALFLDRNE 333
                      ********************************************************************************************** PP

  Glyco_transf_15 313 ihffedigyshdp 325
                      ih+f d+gy+h+p
       CCD23450.1 334 IHHFGDLGYFHAP 346
                      **********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2982.43
//
Query:       CCD23451.1  [L=329]
Description: hypothetical protein NDAI_0B04170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-55  184.7   4.9      4e-20   71.5   0.2    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1   7.9e-20   1.4e-15       6      94 ..      36     128 ..      33     131 .. 0.92
   2 !   57.5   0.1   5.3e-20   9.6e-16       3      96 ..     143     230 ..     141     231 .. 0.92
   3 !   71.5   0.2   2.2e-24     4e-20       4      97 .]     238     328 ..     235     328 .. 0.93

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 7.9e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 lk+l+aGg++g++a++  +P+d++K+r q+++ ++++   ++    ++ + k  + ++ +rg+y+G++p ll+v+p  a+ f+ y+  k++++
  CCD23451.1  36 LKSLAAGGVGGVCAVVTGHPFDLIKVRCQSNQAKGTTDAITKilkeARLATKGSFFTNSIRGFYKGVIPPLLGVTPIFAISFWGYDIGKKIVT 128
                 789***************************9999998887778888899999999*******************************9999876 PP

  == domain 2  score: 57.5 bits;  conditional E-value: 5.3e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHH.HHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykee.GlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                 ls+ +   aG ++++ +tlvt+P++++K+ lqt k+ s       ++ + k i+k+  G+r+l++G l++l r  p sal+f++ye  k++l+k+
  CCD23451.1 143 LSIGQMATAGFISAIPTTLVTAPTERIKVVLQTTKNGS-------FFGAAKDIIKNGgGIRSLFKGSLATLARDGPGSALYFASYEISKKYLNKQ 230
                 67778899*************************99885.......9*********75279********************************996 PP

  == domain 3  score: 71.5 bits;  conditional E-value: 2.2e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHH.HHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiy.keeGlrglyrGllpnllrvapasalkfvlyetlkrlllkks 97 
                 s+ + +laGg+ag+  +l+++P+d++Kt+lq++++++++s    +l++ k+iy k  G++g++ Gl+p+llr++pa+a++f+  e ++ +++k++
  CCD23451.1 238 SIKNVCLAGGIAGMSMWLAVFPIDTIKTKLQASSGTGSQS----MLSATKEIYlKRGGIKGFFPGLGPALLRSFPANAATFLGVELTHSFFKKYN 328
                 5667799*****************************9875....9********8899**********************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2451.61
//
Query:       CCD23452.1  [L=329]
Description: hypothetical protein NDAI_0B04180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-57  192.2   0.7    7.6e-57  191.4   0.7    1.4  1  Ras           Ras family
    9.5e-21   74.2   0.1    9.5e-21   74.2   0.1    2.0  2  Roc           Ras of Complex, Roc, domain of DAPkinase
      2e-09   37.2   0.6    7.4e-09   35.3   0.1    2.0  2  Arf           ADP-ribosylation factor family
     0.0015   18.1   5.3     0.0026   17.3   3.6    2.4  2  GTP_EFTU      Elongation factor Tu GTP binding domain
     0.0023   18.0   0.0     0.0023   18.0   0.0    2.6  3  MMR_HSR1      50S ribosome-binding GTPase
     0.0042   17.0   7.7        0.3   11.0   0.1    3.5  4  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.032   14.2   1.0       0.15   12.1   0.1    2.4  2  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
       0.23   11.7   9.7       0.36   11.1   9.7    1.3  1  GAGA_bind     GAGA binding protein-like family
        3.8    7.3  15.7        6.2    6.6  15.7    1.3  1  RR_TM4-6      Ryanodine Receptor TM 4-6
        4.5    5.7  12.8        5.3    5.5  12.8    1.2  1  Macoilin      Macoilin family


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.4   0.7   4.3e-60   7.6e-57       1     160 [.      12     171 ..      12     173 .. 0.98

  Alignments for each domain:
  == domain 1  score: 191.4 bits;  conditional E-value: 4.3e-60
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Klv+vG ++vGK++l+++ ++++F +ey++Ti +d+y+k++ +d+k   l+++DTAGqee++++re+y+r++eg++lvy+its++sfe++ +++++i+r
  CCD23452.1  12 KLVVVGGGGVGKSALTIQLIHSHFVDEYDPTI-EDSYRKQVVIDDKVTVLDVLDTAGQEEYSAMREQYMRTGEGFVLVYSITSKNSFEELMTYYQQIQR 109
                 99******************************.****************************************************************** PP

                 HST.TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 100 vae.envpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellrei 160
                 v++ + +p+v+vGnK+Dle++r+vs++ g +lak+++++fletSAk++ nveeaf++l+r +
  CCD23452.1 110 VKDsDYIPVVIVGNKSDLEDERQVSYQAGVNLAKQMNAPFLETSAKQAINVEEAFYTLVRLV 171
                 **9888****************************************************9977 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.2   0.1   5.3e-24   9.5e-21       1     119 [.      12     126 ..      12     127 .. 0.87
   2 ?   -1.6   0.6       1.7   3.1e+03      23      23 ..     271     271 ..     236     305 .. 0.54

  Alignments for each domain:
  == domain 1  score: 74.2 bits;  conditional E-value: 5.3e-24
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K+v+vG +gvGK+ l  ++++++f +++++ti  ++ ++ v+ i     d+k     l++ DtaGqe+++++++ y+r  + ++lvy    ++s+e+l 
  CCD23452.1  12 KLVVVGGGGVGKSALTIQLIHSHFVDEYDPTIEDSYRKQ-VV-I-----DDK--VTVLDVLDTAGQEEYSAMREQYMRTGEGFVLVYSitsKNSFEELM 101
                 99*******************************998654.42.2.....333..4579*****************************965455678999 PP

                 HHHHHHHHHCSSS..-EEEEEE-TT CS
         Roc  97 eWlkelkkvagks..pvilvgnkiD 119
                 ++++++++v +++  pv++vgnk D
  CCD23452.1 102 TYYQQIQRVKDSDyiPVVIVGNKSD 126
                 ********988654599******99 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.7
                 C CS
         Roc  23 k 23 
                 +
  CCD23452.1 271 D 271
                 1 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   4.1e-12   7.4e-09      10     137 ..       6     134 ..       1     171 [. 0.78
   2 ?   -0.3   0.0      0.36   6.5e+02     131     167 ..     180     215 ..     166     222 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 4.1e-12
                 T.TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEE.EEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHH CS
         Arf  10 lkkkelrilllGLDnaGKtTilkklkleelvt.tvPTigfnvee.lei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeL 104
                 ++ +e++++++G  + GK+ +  +l + ++v+   PTi    ++ + i  k   + v D  Gqe+   + ++Y+++ ++ + v   + ++ +ee  +  
  CCD23452.1   6 SNIREFKLVVVGGGGVGKSALTIQLIHSHFVDeYDPTIEDSYRKqVVIddKVTVLDVLDTAGQEEYSAMREQYMRTGEGFVLVYSITSKNSFEELMTYY 104
                 4469*****************99999888775489***9776541555434556789999*************************************** PP

                 HHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHH CS
         Arf 105 kalleeeelkevallvlaNKqDlpealseeelr 137
                 +++ + ++   +++++++NK Dl++  +    +
  CCD23452.1 105 QQIQRVKDSDYIPVVIVGNKSDLEDERQV---S 134
                 ***********************986543...3 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.36
                 S-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHH CS
         Arf 131 lseeelrellgleelkgkrkleiqkcsavkgeglkeg 167
                  +++e++++ + ++++ +++ +i++ ++++++gl+  
  CCD23452.1 180 KNNAEVENAKENQHIT-DETNNINSNTIISQQGLTTQ 215
                 5788999999999999.89999999999999998754 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.38   6.8e+02       6      27 ..      13      34 ..       9      56 .. 0.79
   2 !   17.3   3.6   1.4e-06    0.0026      67     191 ..      55     170 ..      25     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.38
                EEEEESTTSSHHHHHHHHHHHT CS
    GTP_EFTU  6 igiighvDhGKtTLtdrLlykt 27
                ++++g    GK+ Lt +L++++
  CCD23452.1 13 LVVVGGGGVGKSALTIQLIHSH 34
                678899999******9999765 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.4e-06
                 CSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT.....TBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHH CS
    GTP_EFTU  67 tkkylinliDtPGHvdFskevirglrvlDgavlvvdav.....eGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeekleky 160
                  k + + ++Dt G +++s   ++ +r+ +g vlv +++     e  ++  +++ r+  +  +p++++ NK D  +++    +  v+  l          
  CCD23452.1  55 DKVTVLDVLDTAGQEEYSAMREQYMRTGEGFVLVYSITsknsfEELMTYYQQIQRVKDSDYIPVVIVGNKSDLEDERQVSYQAGVN--L---------- 141
                 56678899*****************************9666666699999999999****************98766555555554..4.......... PP

                 HHTTTTTEEEEEEBTTTTBTHHHHHHHHHHH CS
    GTP_EFTU 161 gekgekevpvvfgSalkgegvktllealvel 191
                  +k+  + p++ +Sa+++ +v++ + +lv+l
  CCD23452.1 142 -AKQ-MNAPFLETSAKQAINVEEAFYTLVRL 170
                 .122.34677777777777777666666554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.3e-06    0.0023       2     114 .]      13     124 ..      12     124 .. 0.70
   2 ?   -0.3   0.0      0.62   1.1e+03      77     103 ..     166     191 ..     137     216 .. 0.64
   3 ?   -1.8   0.5       1.8   3.2e+03      19      43 ..     268     294 ..     266     304 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.3e-06
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT...TTCSHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdas...eeklkplde 95 
                  ++vG   vGKS L  +l+ +   v ++  t  d  +++v +++  + + ++Dt+G  e   e   +++++ +  e  ++++ + ++   ee l    +
  CCD23452.1  13 LVVVGGGGVGKSALTIQLIHS-HFVDEYDPTIEDSYRKQVVIDDkvTVLDVLDTAG-QE---EYSAMREQYMRTGEGFVLVYSITSKnsfEE-LMTYYQ 105
                 689****************97.55888888888888888886664567899*****.54...444899999998886666666664444322.222234 PP

                 HHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  96 eleelleeakkplilvlnk 114
                 +++++++++ +p+++v nk
  CCD23452.1 106 QIQRVKDSDYIPVVIVGNK 124
                 4444444456777777776 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.62
                 SEEEEEEETTTTCSHHHHHHHHHHHHH CS
    MMR_HSR1  77 dlillvvdaseeklkpldeeleellee 103
                  l+ lv d + +++++++ e+e+ +e+
  CCD23452.1 166 TLVRLVRD-NGGEYNKNNAEVENAKEN 191
                 44445555.335688888888877644 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.8
                 HHTS..TEEESSSTTSSSSEEEEEEEE CS
    MMR_HSR1  19 ltge..kaivsdkpgtTrdinegrvkl 43 
                 lt++  ka++s  + tT ++++  v++
  CCD23452.1 268 LTKDqhKAEASTVNATTDNTTKVPVNK 294
                 666555788888889998888887774 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.3    0.0013       2.3      96     121 ..       7      32 ..       3      49 .. 0.83
   2 ?    0.9   0.0       0.2   3.6e+02      52      99 ..      59     106 ..      48     110 .. 0.77
   3 !   11.0   0.1   0.00017       0.3      43      92 ..     112     162 ..      83     171 .. 0.77
   4 ?   -1.5   0.2       1.2   2.1e+03      28      66 ..     242     281 ..     228     308 .. 0.46

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0013
                  HCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallp 121
                  ++++   v+vG  GvGKS+L  +l+ 
   CCD23452.1   7 NIREFKLVVVGGGGVGKSALTIQLIH 32 
                  566667899***********888765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.2
                  EEE-GGG--HHHHHHHHHHHHHHTTSE.EEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  52 vlnKiDlleeeeeleelkeelealgye.vllvsaktkegleelkellkd 99 
                  vl  +D + +ee +++++e++ ++g   vl+ s ++k+++eel ++ ++
   CCD23452.1  59 VLDVLDTAGQEE-YSAMREQYMRTGEGfVLVYSITSKNSFEELMTYYQQ 106
                  666678888888.999999999998651667788899999999887765 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00017
                  HHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHH CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkeglee 92 
                   +  i++viv nK Dl +e++ ++++  +  ++++ ++l +sak+  ++ee
   CCD23452.1 112 DSDYIPVVIVGNKSDLEDERQvSYQAGVNLAKQMNAPFLETSAKQAINVEE 162
                  455689**************9899999999**************9888775 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.2
                  TT--HHHHHHHHHHHHHTT-EEE.EEEE-GGG--HHHHHH CS
  RsgA_GTPase  28 pelslnlldrfLvlaeekgiepv.ivlnKiDlleeeeele 66 
                  +++s+++  +  ++a++++ +p    l+K     e+++++
   CCD23452.1 242 DQFSNEQRLKQQAQAQAQQKQPQpQQLTKDQHKAEASTVN 281
                  4444333333333333222222212333333333333333 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.54   9.6e+02      57      96 ..      55     100 ..      40     108 .. 0.58
   2 ?   12.1   0.1   8.3e-05      0.15      52      95 ..     112     162 ..      90     171 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.54
  MMR_HSR1_Xtn  57 pclyvlNKiDlisleeldelare......pnsvviSaekelnldeL 96 
                     ++vl   D++ +ee ++++++        ++v S  ++  ++eL
    CCD23452.1  55 DKVTVLDVLDTAGQEEYSAMREQymrtgeGFVLVYSITSKNSFEEL 100
                   4455566666666666666666544444223445566666666666 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.3e-05
  MMR_HSR1_Xtn  52 nrvYipclyvlNKiDl.....isleeldelare..pnsvviSaekelnlde 95 
                   +  Yip+++v NK Dl     +s++   +la++     + +Sa++++n++e
    CCD23452.1 112 DSDYIPVVIVGNKSDLederqVSYQAGVNLAKQmnAPFLETSAKQAINVEE 162
                   458*************44444444444455554333566699999999986 PP

>> GAGA_bind  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   9.7    0.0002      0.36      20     167 ..     137     315 ..     122     324 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
   GAGA_bind  20 vkgnlglqlmsslaeRdtkpllqernlal..................alsekkaalaerdaamaflrrdaalaerekvlnvlpvnka............ 88 
                    nl +q+ + + e  +k++++ ++++                    ++++k++++  d+ ++ +++++ ++             +            
  CCD23452.1 137 AGVNLAKQMNAPFLETSAKQAINVEEAFYtlvrlvrdnggeynknnaEVENAKENQHITDE-TNNINSNTIIS-------------Qqglttqgenvvv 221
                 4567888888888888888888888876666664444444333333222333333333332.22222233333.............2233333333334 PP

   GAGA_bind  89 ..............kalleednalaalqmlrp.lesqlqeaeapelekeevasselveesavvekeeaakkrqqgkrpkepkakkakkaarkpk 167
                                a +++d+  ++ ++ ++ + +++q++++p++ +++++++e+   +a++ +++++   ++++++k++++k+++ a++k+ 
  CCD23452.1 222 ngttspssigtapnVASIDQDQFSNEQRLKQQaQAQAQQKQPQPQQLTKDQHKAEASTVNATTDNTTKVPVNKSNQAAKQARTKQSQPAPAKAA 315
                 4444555555555566666666555555544434444555556677777777666665555555443333333334455555544444443333 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  15.7    0.0035       6.2      17     155 ..     180     311 ..     170     322 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0035
                 XXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX CS
    RR_TM4-6  17 dekeeeeeesleedlaeaageeeeedllsdvfgldlkkeggqykvvakkseagLgDlseteaeespt.pelkkklaeeeeaeeekeeeeepeaeaeeka 114
                 ++++e e+++ ++ +++ +++ +++ ++s+  gl+++ e+    v  + s++++g   + ++ ++ + +++++ ++++++++++k+ + ++ +++++ka
  CCD23452.1 180 KNNAEVENAKENQHITDETNNINSNTIISQ-QGLTTQGENV--VVNGTTSPSSIGTAPNVASIDQDQfSNEQRLKQQAQAQAQQKQPQPQQLTKDQHKA 275
                 444555555555777777777777777776.6999888888..67889999999999998888887644444444443444444444444444444444 PP

                 XXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXX CS
    RR_TM4-6 115 daengekeekekekeeeekeseeeeeekkkkkkakskkkee 155
                 +a++ ++++ +++     k + +++++++k++++k+++ + 
  CCD23452.1 276 EASTVNATTDNTT-----KVPVNKSNQAAKQARTKQSQPAP 311
                 4444443333333.....22222222222222222222222 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  12.8    0.0029       5.3     205     336 ..     191     316 ..      92     326 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0029
    Macoilin 205 eqqlldkeereaeeqlaaakelvevdpvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlskses 303
                 +q+++d++++  +++  + ++l++   +++ + ++s+++  ++ +++ +++ + +++++ +++ +++      +++++ q ++ ++++ k++ ++ + +
  CCD23452.1 191 NQHITDETNNINSNTIISQQGLTTQGENVVVNGTTSPSSIGTAPNVASIDQDQFSNEQRLKQQAQAQ------AQQKQPQPQQLTKDQHKAEASTVNAT 283
                 2355555555556656666666644445555555555555556666666555554444433333322......23333344444444444444444444 PP

    Macoilin 304 sgsesellveesvkskssssssssnknskkasa 336
                 +++++++ v++s+++ +++ +++s++   ka++
  CCD23452.1 284 TDNTTKVPVNKSNQAAKQARTKQSQPAPAKAAT 316
                 555555555555555555544444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3008  (0.167773); expected 358.6 (0.02)
Passed bias filter:                      758  (0.0422779); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 2323.55
//
Query:       CCD23453.1  [L=236]
Description: hypothetical protein NDAI_0B04190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1294  (0.0721736); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1886.71
//
Query:       CCD23454.1  [L=284]
Description: hypothetical protein NDAI_0B04200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-15   54.5   2.1    8.6e-15   54.5   2.1    2.0  2  SNARE          SNARE domain
    1.3e-05   25.5   0.8    1.3e-05   25.5   0.8    3.5  3  Syntaxin_2     Syntaxin-like protein
     0.0001   22.0   1.8     0.0001   22.0   1.8    2.0  2  Synaptobrevin  Synaptobrevin
    0.00071   18.9   3.9    0.00071   18.9   3.9    1.7  2  TMPIT          TMPIT-like protein
     0.0022   15.9  14.9     0.0051   14.7  11.6    2.0  2  Myosin_tail_1  Myosin tail
     0.0077   16.9   0.5     0.0077   16.9   0.5    3.2  2  Occludin_ELL   Occludin homology domain
  ------ inclusion threshold ------
      0.027   14.8   0.2      0.027   14.8   0.2    2.6  4  Rx_N           Rx N-terminal domain
      0.076   12.9   0.4       0.13   12.1   0.4    1.4  1  S6PP_C         Sucrose-6-phosphate phosphohydrolase C-termina
      0.083   12.9   0.1      0.083   12.9   0.1    3.2  2  DUF5345        Family of unknown function (DUF5345)
      0.085   12.6  17.9        1.2    8.8  17.9    2.5  1  Use1           Membrane fusion protein Use1
       0.12   12.7   0.2       0.12   12.7   0.2    2.7  2  DUF5383        Family of unknown function (DUF5383)
       0.18   12.0   0.1       0.18   12.0   0.1    2.7  2  COG5           Golgi transport complex subunit 5
       0.38   11.0  16.7       0.14   12.4  11.3    2.6  4  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
       0.53    9.5   5.6       0.43    9.8   1.4    2.3  2  ISG65-75       Invariant surface glycoprotein
       0.81    9.7   6.9       0.46   10.5   0.3    2.4  2  Consortin_C    Consortin C-terminus
       0.87    9.3   8.9       0.17   11.6   4.3    1.9  2  EIIBC-GUT_N    Sorbitol phosphotransferase enzyme II N-termin
       0.88    9.2  16.6       0.13   12.0   7.9    3.0  3  Syntaxin       Syntaxin
        2.5    7.7  15.5         20    4.7  12.9    2.4  3  Phage_GPO      Phage capsid scaffolding protein (GPO) serine 
        2.7    8.1  13.1         28    4.7  13.1    2.5  1  MCU            Mitochondrial calcium uniporter
        3.9    6.3  19.0        1.5    7.7  13.8    2.1  2  Spc7           Spc7 kinetochore protein
        4.6    7.8  18.7        1.6    9.3  10.7    3.2  4  Spectrin       Spectrin repeat


Domain annotation for each model (and alignments):
>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       9.3   7.9e+03       1      13 [.     199     211 ..     199     212 .. 0.74
   2 !   54.5   2.1     1e-17   8.6e-15       1      53 []     227     279 ..     227     279 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 9.3
                 HHHHHHHHHHHHH CS
       SNARE   1 emvDrIdtnVena 13 
                 e++ rI + V+++
  CCD23454.1 199 EQITRIHSAVQEV 211
                 6888888888765 PP

  == domain 2  score: 54.5 bits;  conditional E-value: 1e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                 e+vD+Id nV + +sn+ +a+++Lkka ++q+++ ++ +++l+ilvi++l+v+
  CCD23454.1 227 EQVDTIDGNVTQLSSNMHKANQQLKKADEHQRQRNRCGMLTLIILVIVVLIVV 279
                 89*************************************************97 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.8   1.5e-08   1.3e-05       1      95 [.      34     120 ..      34     126 .. 0.86
   2 ?   -2.6   3.7       8.8   7.5e+03      87      99 ..     165     177 ..     144     197 .. 0.50
   3 !   11.8   3.3   0.00028      0.24       2      62 ..     198     259 ..     197     265 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.5e-08
  Syntaxin_2   1 issnlqkinsnvstleklvkqLgtkkdteelrekl.helieeinelikktnellkklsqldnsssdsqqklqkekLkkdfkealqeFqkiqrqyae 95 
                 i++ l ++++++ tl++  +++g+k+d+ e+r+k+  +li  +nel  ++ ++    ++  + +         +kL +dfk + +e+ ++ r+y+ 
  CCD23454.1  34 INDLLNTLANHIATLKRECRKIGSKRDNNETRKKIeYDLIPLCNELRDRIDDNQPTWQNTFHEG---------SKLYNDFKILKTELISVERSYET 120
                 5678999****************************88*************99987666666654.........79999999999999999888876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 8.8
  Syntaxin_2  87 qkiqrqyaekekq 99 
                 q+ q+q  e +kq
  CCD23454.1 165 QRQQQQLLEEQKQ 177
                 2222222222221 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00028
  Syntaxin_2   2 ssnlqkinsnvstleklvkqLgtk.kdteelreklhelieeinelikktnellkklsqldns 62 
                 s+++++i+s v++ +  + qLg+  k++ e  + ++ ++++++   +k n++lkk ++ +++
  CCD23454.1 198 SEQITRIHSAVQEVNAIFHQLGSLvKEQGEQVDTIDGNVTQLSSNMHKANQQLKKADEHQRQ 259
                 79*********************977888888999999999999999999999998886665 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   1.7       5.6   4.8e+03      18      51 ..     157     190 ..     145     192 .. 0.72
   2 !   22.0   1.8   1.2e-07    0.0001       3      84 ..     199     280 ..     197     284 .] 0.65

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.6
                    HHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHH CS
  Synaptobrevin  18 imkeNidkvlergekldeLvdktenLqssaqqFk 51 
                    ++ +N ++  + ++ l+e++++  + +++  +F+
     CCD23454.1 157 LVSSNQQRQRQQQQLLEEQKQQQRQVSQNDVDFE 190
                    5667777777888888888888777777777765 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1.2e-07
                    XHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   3 dklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklkrkmwwknmkliiililvvlililiii 84 
                    +++++i++ v+ev  i ++    v e ge++d+++    +L+s+  + ++q +k  +++  +n   +++li++v++++++++
     CCD23454.1 199 EQITRIHSAVQEVNAIFHQLGSLVKEQGEQVDTIDGNVTQLSSNMHKANQQLKKADEHQRQRNRCGMLTLIILVIVVLIVVL 280
                    6899******************************988666655554444444444444444444333333333333333332 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.89   7.6e+02      28      61 ..      34      67 ..       9     130 .. 0.59
   2 !   18.9   3.9   8.3e-07   0.00071      25     145 ..     161     280 ..     134     284 .] 0.70

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.89
       TMPIT 28 lsklqskcskeikkqkkrlkelksslkklkksvk 61
                ++ l ++++++i++ k++++++ s+ ++ ++++k
  CCD23454.1 34 INDLLNTLANHIATLKRECRKIGSKRDNNETRKK 67
                4444444444444444444444444444333322 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 8.3e-07
       TMPIT  25 leelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkevesllpkknglylklvlGnv...nvsllnkqdkfkyKde 120
                  ++ +++q+++    ++qk++ ++++++  ++++ +++e++e+++++++ ++e +++++++ sl  k++g  +  + Gnv   + ++ + ++++k  de
  CCD23454.1 161 NQQRQRQQQQLL---EEQKQQQRQVSQNDVDFETIIQQERSEQITRIHSAVQEVNAIFHQLGSL-VKEQGEQVDTIDGNVtqlSSNMHKANQQLKKADE 255
                 223333333333...3333334444444444444445799*******************99876.88899999999998722245677778899999** PP

       TMPIT 121 YekFklkltvillllslllllllss 145
                 +++ + ++ +++l++ ++++l++  
  CCD23454.1 256 HQRQRNRCGMLTLIILVIVVLIVVL 280
                 ********99999999888877655 PP

>> Myosin_tail_1  Myosin tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.028        24     380     454 ..      39     116 ..      13     135 .. 0.75
   2 !   14.7  11.6     6e-06    0.0051      29     121 ..     162     260 ..     143     268 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.028
  Myosin_tail_1 380 qaLesenkelqaelkslqqakqdseqkrkkleaql....qelqvklseserqreelaekvsklqaelesvsslleeaeg 454
                    ++L +  + l+ e +++ + k+d ++ rkk+e  l    +el+ ++++ + + +++    skl +++  +++ l ++e 
     CCD23454.1  39 NTLANHIATLKRECRKIGS-KRDNNETRKKIEYDLiplcNELRDRIDDNQPTWQNTFHEGSKLYNDFKILKTELISVER 116
                    5677777888899998865.55555667778877645557888888888888888888888888888888777777664 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6e-06
  Myosin_tail_1  29 kelekkqqqlleeklaLqeqL.....qaetelfaeaeemRaRLaarkqeleeilhdleaRleeeeeraqqlqsekkkmqqniqdleeqlde.eeaa 118
                    ++ +++qqqllee+++ q q+       et + +e  e  +R+ +  qe++ i+h+l + ++e  e++ ++  +  ++  n+++ ++ql++ +e  
     CCD23454.1 162 QQRQRQQQQLLEEQKQQQRQVsqndvDFETIIQQERSEQITRIHSAVQEVNAIFHQLGSLVKEQGEQVDTIDGNVTQLSSNMHKANQQLKKaDEHQ 257
                    5556778888888777666652111167999**********************************************************8537899 PP

  Myosin_tail_1 119 Rqk 121
                    Rq+
     CCD23454.1 258 RQR 260
                    998 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.37   3.2e+02      27      94 ..      41     109 ..      25     116 .. 0.58
   2 !   16.9   0.5     9e-06    0.0077      25      85 ..     202     266 ..     195     273 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.37
  Occludin_ELL  27 lhaeleevskkfseLerelkelkegskeykkieeeilqeykklkk..dpeyqekkkrceyLkekLshiKk 94 
                   l +++++++++ +++ ++ ++ ++++k + +++  +++e+++     +p++q++ ++  +L++  + +K+
    CCD23454.1  41 LANHIATLKRECRKIGSKRDNNETRKKIEYDLIP-LCNELRDRIDdnQPTWQNTFHEGSKLYNDFKILKT 109
                   4555555666666666666665555553333332.35666655433366666666666666666666665 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 9e-06
  Occludin_ELL  25 kelhaeleevskkfseLerelkelkegsk....eykkieeeilqeykklkkdpeyqekkkrceyL 85 
                    ++h+ ++ev++ f++L + +ke+ e+ +    +++++ +++ +  ++lkk  e+q++++rc  L
    CCD23454.1 202 TRIHSAVQEVNAIFHQLGSLVKEQGEQVDtidgNVTQLSSNMHKANQQLKKADEHQRQRNRCGML 266
                   5799**************9999988887778889999****9********************988 PP

>> Rx_N  Rx N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       4.1   3.5e+03      30      37 ..      48      55 ..      31      86 .. 0.52
   2 ?   -2.5   0.0       7.7   6.6e+03      22      38 ..      99     115 ..      90     119 .. 0.79
   3 ?   -2.5   0.3       7.5   6.4e+03      41      46 ..     172     177 ..     157     200 .. 0.60
   4 ?   14.8   0.2   3.1e-05     0.027       2      52 ..     211     261 ..     210     266 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4.1
        Rx_N 30 lkdeLesi 37
                lk+e ++i
  CCD23454.1 48 LKRECRKI 55
                33333333 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 7.7
        Rx_N  22 gvkeeleklkdeLesiq 38 
                 ++ ++++ lk+eL s++
  CCD23454.1  99 KLYNDFKILKTELISVE 115
                 56789999999998775 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 7.5
        Rx_N  41 Ledaee 46 
                 Le+  +
  CCD23454.1 172 LEEQKQ 177
                 222222 PP

  == domain 4  score: 14.8 bits;  conditional E-value: 3.1e-05
        Rx_N   2 vsallqkLadllaeeakllkgvkeeleklkdeLesiqavLedaeerqikde 52 
                 v+a+  +L++l++e+ +++  +++ + +l +++++ ++ L++a+e q++ +
  CCD23454.1 211 VNAIFHQLGSLVKEQGEQVDTIDGNVTQLSSNMHKANQQLKKADEHQRQRN 261
                 678899***************************************998754 PP

>> S6PP_C  Sucrose-6-phosphate phosphohydrolase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   0.00015      0.13       8      79 ..     167     240 ..     156     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
      S6PP_C   8 dvsell.eskaeaakpakevVkfyllyekwrrgeveksdevlqklkailapsgvlvhpsGveks.lhesidalr 79 
                 + ++ll e+k+++ +++++ V+f  ++++ r  ++ +  +++q++ ai+++ g+lv+  G++ + +   + +l+
  CCD23454.1 167 QQQQLLeEQKQQQRQVSQNDVDFETIIQQERSEQITRIHSAVQEVNAIFHQLGSLVKEQGEQVDtIDGNVTQLS 240
                 4444444778999999********************************************87541455566655 PP

>> DUF5345  Family of unknown function (DUF5345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       2.2   1.9e+03       5      36 ..      19      51 ..      17      54 .. 0.76
   2 ?   12.9   0.1   9.7e-05     0.083       4      58 ..     228     282 ..     225     284 .] 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.2
     DUF5345  5 lerlDqlievet.Psleeleqllaeekerkrkr 36
                +e+l +++++++ P  ++l + la+  +  ++ 
  CCD23454.1 19 IEQLPTSNDHNNiPRINDLLNTLANHIATLKRE 51
                688889999999999999999988776666665 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 9.7e-05
     DUF5345   4 glerlDqlievetPsleeleqllaeekerkrkrlrrElllFlliAllilslllla 58 
                 + + +D ++ + + + ++ +q+l+++ e++r+r+r  +l ++++ +++l ++l +
  CCD23454.1 228 QVDTIDGNVTQLSSNMHKANQQLKKADEHQRQRNRCGMLTLIILVIVVLIVVLAV 282
                 56788888888889999******************99988888777777666554 PP

>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  17.9    0.0014       1.2      77     241 ..     114     280 ..      13     283 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0014
        Use1  77 eekalanqllapg...eeskeekeeskereeaskelrqkekakyqkelrkellgkndsssspekekeskkkksdedldavlkkhenlqEklaeemlsLa 172
                  e+  ++q+++      + +++++ +++ e+   +l+ +e++   + ++++  ++++   +++k+++ + +++d d++++++++++ q  ++  + s +
  CCD23454.1 114 VERSYETQKVTYPlkeIHVDSTSTGQPAAESNYVSLHINEQTPLVSSNQQRQRQQQQLL-EEQKQQQRQVSQNDVDFETIIQQERSEQ--IT-RIHSAV 208
                 22333322222224321334555666666677778888887777666666665555543.3444444445599999999999988755..55.578888 PP

        Use1 173 rnLKenslaasqiikkDtetlsk...sekaadqnlaslkkeserleehskskvkcllwlllfvvlvvFismv 241
                 ++        ++ +k+  e ++    ++ +  +n+ + +++ +++ eh++++ +c ++ l+++v+vv i + 
  CCD23454.1 209 QEVNAIFHQLGSLVKEQGEQVDTidgNVTQLSSNMHKANQQLKKADEHQRQRNRCGMLTLIILVIVVLIVVL 280
                 888888888999999887765551116667777888888888888899****************99999654 PP

>> DUF5383  Family of unknown function (DUF5383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   5.3       2.5   2.2e+03      13      38 ..     153     179 ..     144     230 .. 0.61
   2 ?   12.7   0.2   0.00014      0.12      54     114 ..     221     281 ..     209     283 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.5
     DUF5383  13 inteylr.eeaeyeeekeipeeqkdLt 38 
                 ++t     +++++++++++ eeqk+ +
  CCD23454.1 153 EQTPLVSsNQQRQRQQQQLLEEQKQQQ 179
                 555444437778888888888888744 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00014
     DUF5383  54 LfassekesntiaakakelgLfseekesvkqsateqeseeksnlLpillillivllivvll 114
                 L +++ ++  ti  +  +l    ++++++ ++a+e++ +++   + +l il+iv+livvl 
  CCD23454.1 221 LVKEQGEQVDTIDGNVTQLSSNMHKANQQLKKADEHQRQRNRCGMLTLIILVIVVLIVVLA 281
                 5556666777888888887777777777778888888877777777777778888777764 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00021      0.18      27     102 ..      57     130 ..      42     138 .. 0.88
   2 ?    0.8   8.0       0.6   5.2e+02      18     111 ..     158     252 ..     148     266 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00021
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TTHHHHHHH CS
        COG5  27 teldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslssvlselksslesLsasyerlkskvlepyeea 102
                 ++ d + ++k+++yd+  l ++lr+ i +n+++  + + + ++l +  + lk++l+s++ sye   +kv+ p +e+
  CCD23454.1  57 SKRDNNETRKKIEYDLIPLCNELRDRIDDNQPTWQNTFHEGSKLYNDFKILKTELISVERSYET--QKVTYPLKEI 130
                 67789999******************************************************95..6777776665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.6
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHH CS
        COG5  18 lkatnnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlsks.kslssvlselksslesLsasyerlkskvlepyeeaeklqsalkr 111
                 ++++++ + ++  l  + k+ +  +++ d   +++i+++ +e ++++ +  ++ +++ ++l s +++  + ++ +  +v++   ++ k +++lk+
  CCD23454.1 158 VSSNQQRQRQQQQLLEEQKQQQRQVSQNDVDFETIIQQERSEQITRIHSAvQEVNAIFHQLGSLVKEQGEQVDTIDGNVTQLSSNMHKANQQLKK 252
                 55666667777777777888888888888888888888777777777665144444888888888888888888888888888888888888876 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.1       1.1   9.7e+02      59      93 ..      19      55 ..       7      66 .. 0.56
   2 ?   -0.1   0.1       1.3   1.1e+03      53      68 ..      39      54 ..      28      91 .. 0.59
   3 ?   -0.9   0.1       2.2   1.8e+03      72      72 ..      72      72 ..      41     123 .. 0.58
   4 ?   12.4  11.3   0.00017      0.14      15      98 ..     174     258 ..     157     262 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1.1
                  CCCCCCTT..S-TCCCCCCCHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N 59 Igkakkkk..edaeeliaevkelkeelkaleaelkel 93
                  I+++  ++  +++ ++ +  ++l + +++l+ e +++
    CCD23454.1 19 IEQLPTSNdhNNIPRINDLLNTLANHIATLKRECRKI 55
                  5555555545555555555556666666666555555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.3
                  HHHHHHCCCCCCTTS- CS
  Seryl_tRNA_N 53 NelskeIgkakkkked 68
                  N+l+++I+ +k++  +
    CCD23454.1 39 NTLANHIATLKRECRK 54
                  4444444444444321 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 2.2
                  C CS
  Seryl_tRNA_N 72 l 72
                  l
    CCD23454.1 72 L 72
                  1 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00017
                   HHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTT.S-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  15 keklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkk.edaeeliaevkelkeelkaleaelkeleaele 98 
                   ++k+++R+++++dvd    ++++r e ++++ ++ +e N++  + g++ k++ e+ + +   v +l+ ++ +++++lk++++ + 
    CCD23454.1 174 EQKQQQRQVSQNDVDFETIIQQERSEQITRIHSAVQEVNAIFHQLGSLVKEQgEQVDTIDGNVTQLSSNMHKANQQLKKADEHQR 258
                   4689999*****************************************99988***************************99765 PP

>> ISG65-75  Invariant surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.22   1.9e+02      56     119 ..      31      90 ..      17     105 .. 0.65
   2 ?    9.8   1.4    0.0005      0.43      57     120 ..     195     258 ..     184     263 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.22
    ISG65-75  56 lketkdklayienakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkareka 119
                 + +++d l+ ++n+++ ++++  k++s  +++++ ++++ +    l  +c+e  + +++++ + 
  CCD23454.1  31 IPRINDLLNTLANHIATLKRECRKIGSKRDNNETRKKIEYD----LIPLCNELRDRIDDNQPTW 90 
                 55677777888888888888888886666665444444433....4567777766666666655 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0005
    ISG65-75  57 ketkdklayienakekvdyyvekleslleeakekgtltesdaeklkkaceeAkaknkkarekak 120
                 +e  ++++ i +a+++v++   +l+sl++e+ e+ ++ + ++++l + + +A ++ kka+e   
  CCD23454.1 195 QERSEQITRIHSAVQEVNAIFHQLGSLVKEQGEQVDTIDGNVTQLSSNMHKANQQLKKADEHQR 258
                 667899**********************************************999999987655 PP

>> Consortin_C  Consortin C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   1.4      0.27   2.3e+02       5      42 ..     154     192 ..     150     204 .. 0.70
   2 ?   10.5   0.3   0.00054      0.46       7      71 ..     217     282 ..     211     284 .] 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.27
  Consortin_C   5 aeglvsilkkrkeledel.keeaqsekksskrkvrfkep 42 
                   + lvs  ++r++++++l +e++q++++ s+  v f+++
   CCD23454.1 154 QTPLVSSNQQRQRQQQQLlEEQKQQQRQVSQNDVDFETI 192
                  566888877777776655577788888888888888764 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00054
  Consortin_C   7 glvsilkkrkeledel.keeaqsekksskrkvrfkepddtldqdevggdscllllllclvtvvisv 71 
                   l s++k + e++d+   +++q + + +k + ++k++d++  q + +g   l++l++ +  vv++v
   CCD23454.1 217 QLGSLVKEQGEQVDTIdGNVTQLSSNMHKANQQLKKADEHQRQRNRCGMLTLIILVIVVLIVVLAV 282
                  5779999999999987578899999**************999999888888887777777777765 PP

>> EIIBC-GUT_N  Sorbitol phosphotransferase enzyme II N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.3    0.0002      0.17     102     179 ..     142     219 ..     124     222 .. 0.85
   2 ?   -0.5   0.1         1   8.7e+02     135     160 ..     240     265 ..     219     280 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
  EIIBC-GUT_N 102 tediyvSgvkeeqieladeeeeeeeeeeeekeeaeekekkketkkkiteqeekekkkgliakigigvGkvvavfyqag 179
                   e++yvS   +eq  l+++++++++++++  ee+++++++ +++    e+  ++++++ i++i  +v +v a+f+q g
   CCD23454.1 142 AESNYVSLHINEQTPLVSSNQQRQRQQQQLLEEQKQQQRQVSQNDVDFETIIQQERSEQITRIHSAVQEVNAIFHQLG 219
                  5899***999999999999999888888888888888888888888888888888999****************9966 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1
  EIIBC-GUT_N 135 aeekekkketkkkiteqeekekkkgl 160
                  +++ +k++++ kk++e+++++++ g+
   CCD23454.1 240 SSNMHKANQQLKKADEHQRQRNRCGM 265
                  22222333333333333344444444 PP

>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.3   2.5e+02      48      86 ..      28      66 ..       3     100 .. 0.57
   2 ?   12.0   7.9   0.00015      0.13     147     200 .]     164     226 ..     152     226 .. 0.84
   3 ?    0.4   0.3      0.51   4.4e+02       8      35 ..     229     256 ..     227     266 .. 0.49

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.3
    Syntaxin 48 esdikeikkraesvkarLeaLdksnkenekksgegsavd 86
                +++i +i+   +++ +++ +L++++++  +k+ ++++ +
  CCD23454.1 28 HNNIPRINDLLNTLANHIATLKRECRKIGSKRDNNETRK 66
                344455555555555555555555555554443333333 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00015
    Syntaxin 147 sevflqkllqeqrgarealsei.........eeRhkevlelekslkeLhqlFldmavLVEeQG 200
                  +   q+ll+eq++++ ++s+          +eR +++ ++ + ++e++ +F ++  LV eQG
  CCD23454.1 164 RQRQQQQLLEEQKQQQRQVSQNdvdfetiiqQERSEQITRIHSAVQEVNAIFHQLGSLVKEQG 226
                 4555788999998886666665568899999*******************************9 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.51
    Syntaxin   8 veeikkeiekleeevkklkkqneeskts 35 
                 v +i  ++++l+++++k ++q ++  + 
  CCD23454.1 229 VDTIDGNVTQLSSNMHKANQQLKKADEH 256
                 4555555555555555544444443332 PP

>> Phage_GPO  Phage capsid scaffolding protein (GPO) serine peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0       0.1        87     176     251 ..      14      86 ..       1     103 [. 0.66
   2 ?   -2.3   5.4       3.2   2.7e+03     204     242 ..     156     190 ..      89     199 .. 0.51
   3 ?    4.7  12.9     0.023        20     167     260 ..     173     262 ..     140     265 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.1
   Phage_GPO 176 slferikallskkkksddarfadveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLskt 251
                 ++ ++i++l +++   d +++  +++ ++++A+++++l+ ++++  ++++++++ kk   +l   +++L+++++ +
  CCD23454.1  14 RIPTNIEQLPTSN---DHNNIPRINDLLNTLANHIATLKRECRKIGSKRDNNETRKKIEYDLIPLCNELRDRIDDN 86 
                 4555555554444...445566677778889999999999999887766666666665556666777777777654 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.2
   Phage_GPO 204 elvAeevkelsekveallaleaelaalkkeveklkaele 242
                  lv ++++++++++    +l +e+++ +++v++++ ++e
  CCD23454.1 156 PLVSSNQQRQRQQQ----QLLEEQKQQQRQVSQNDVDFE 190
                 22222222222222....222233333333333333443 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.023
   Phage_GPO 167 eeeeeeegeslferikallskkkksddarfadveeavelvAeevkelsekveallaleaelaalkkeveklkaeleaLkekLsktdakekqrpe 260
                 ee+++++ +++ ++   + +  +++ +++++ +++av++v + +++l + v+   ++ +++ +++ +v++l++++++ +++L+k d+++ qr++
  CCD23454.1 173 EEQKQQQ-RQVSQNDVDFETIIQQERSEQITRIHSAVQEVNAIFHQLGSLVK---EQGEQVDTIDGNVTQLSSNMHKANQQLKKADEHQRQRNR 262
                 2222222.22222222333333444458888888888888888888888888...8889999*************************9999975 PP

>> MCU  Mitochondrial calcium uniporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  13.1     0.033        28      14     104 ..     183     276 ..       7     283 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.033
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-SS....SSSSTSSSSSHHHHHHHHHHHHH-SHHHHHHHHTCCCGGGCHHHHGGGHHHHHHHHTH CS
         MCU  14 sgvvialstlleeeeakvllrvkqlvkalesal....nveeeqlkkereleekleelreelepleekkeeidekAerrtrrllwagLallavqlg 104
                 s + + ++t++++e++++++r+++ v+++++++    ++ +eq +++ +++ +  +l++++++++++ ++ de+  r+++r  +++L++l++ + 
  CCD23454.1 183 SQNDVDFETIIQQERSEQITRIHSAVQEVNAIFhqlgSLVKEQGEQVDTIDGNVTQLSSNMHKANQQLKKADEHQ-RQRNRCGMLTLIILVIVVL 276
                 233344444788899*****************9888877778888888999999999999999988777777664.4444455555555444443 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.14   1.2e+02     165     221 ..      34      96 ..       6     126 .. 0.58
   2 ?    7.7  13.8    0.0017       1.5     158     260 ..     151     260 ..     142     265 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.14
        Spc7 165 ldellpeleeekaeleeeleklqeaaeeles.....idkeeL.eelreelaelkaeieekkke 221
                 +++ll+ l ++ a+l++e +k+ +++++ e+     +d   L +elr+++++++ + ++   e
  CCD23454.1  34 INDLLNTLANHIATLKRECRKIGSKRDNNETrkkieYDLIPLcNELRDRIDDNQPTWQNTFHE 96 
                 566666666666666666666665444433322222332222355555555555555555555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0017
        Spc7 158 Lekqeeeldellpeleeekaeleeeleklqe.......aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleee 249
                 +++q  ++++  ++ +++++ lee+ +++++       +++ +++  +e++  ++++++e++a  +++   ++e  eq+++++ ++++l++++++++++
  CCD23454.1 151 INEQTPLVSSNQQRQRQQQQLLEEQKQQQRQvsqndvdFETIIQQERSEQITRIHSAVQEVNAIFHQLGSLVKEQGEQVDTIDGNVTQLSSNMHKANQQ 249
                 4555555666666666666666666666666655555566677778899************************************************** PP

        Spc7 250 iaeaervleec 260
                 +++a++ ++++
  CCD23454.1 250 LKKADEHQRQR 260
                 **998766554 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.37   3.2e+02      59      95 ..      14      51 ..       7      55 .. 0.82
   2 ?   -2.3   0.0       7.5   6.4e+03      48      68 ..      81     102 ..      76     130 .. 0.61
   3 ?    9.3  10.7    0.0018       1.6      32     103 ..     157     229 ..     147     231 .. 0.90
   4 ?    2.0   0.3      0.33   2.8e+02      52      80 ..     224     252 ..     222     261 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.37
                HHHHHHHHH.HHTTHTTHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin 59 alnelaekl.ldeghsaseeieerleelnerWeeLkel 95
                ++ +  e+l +++ h   ++i++ l+ l ++ + Lk+ 
  CCD23454.1 14 RIPTNIEQLpTSNDHNNIPRINDLLNTLANHIATLKRE 51
                55566789999999***************999999875 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.5
                 HHHHHHHHHHHHHHHHHHHH.H CS
    Spectrin  48 aelaaqqervkalnelaekl.l 68 
                 + ++++q+  ++  + ++kl  
  CCD23454.1  81 DRIDDNQPTWQNTFHEGSKLyN 102
                 5555666666666666665533 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0018
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  32 dleevqallkkhkaleaelaaqqervkaln.elaeklldeghsaseeieerleelnerWeeLkelaaerkqkL 103
                  +++ q+ +++ ++l +e ++qq++v + + ++++ +++e  ++  +i++ ++e+n  + +L +l++e+ +++
  CCD23454.1 157 LVSSNQQRQRQQQQLLEEQKQQQRQVSQNDvDFETIIQQERSEQITRIHSAVQEVNAIFHQLGSLVKEQGEQV 229
                 57889999**********************88888889999***************************98875 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHHTTHTTHHHHHH CS
    Spectrin  52 aqqervkalnelaeklldeghsaseeiee 80 
                 +q e+v++++   ++l ++ h+a++++++
  CCD23454.1 224 EQGEQVDTIDGNVTQLSSNMHKANQQLKK 252
                 68899999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3262  (0.18194); expected 358.6 (0.02)
Passed bias filter:                      856  (0.0477439); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 1958.03
//
Query:       CCD23455.1  [L=604]
Description: hypothetical protein NDAI_0B04210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   14.6   3.7      0.085   12.9   3.7    2.0  1  bZIP_2    Basic region leucine zipper


Domain annotation for each model (and alignments):
>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.7   4.8e-06     0.085      21      54 .]     554     587 ..     553     587 .. 0.98

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.8e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  21 ekkkakeeeleervkeLeeeNaqLrqkveqLeke 54 
                 ek+k++e+el++ + +L+e   +L++++ +Le+e
  CCD23455.1 554 EKRKLRENELKSSIDDLNELSLKLQDRIHKLETE 587
                 8*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2038  (0.113671); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 4400.40
//
Query:       CCD23456.1  [L=296]
Description: hypothetical protein NDAI_0B04220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-07   31.1   3.2    7.6e-07   29.4   3.2    1.9  1  RGS        Regulator of G protein signaling domain
  ------ inclusion threshold ------
       0.25   10.9   1.6       0.72    9.4   0.2    2.3  3  RE_Bpu10I  Bpu10I restriction endonuclease


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   3.2   8.5e-11   7.6e-07       9     111 ..      38     162 ..      32     173 .. 0.84

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 8.5e-11
                 HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS......................SHHHHHHHHHHHHHHHHTSTTSTTSSTS-HHHHHHHHHHHCSSST CS
         RGS   9 qpgrslFreFlesefseenlsFwlaveefkka......................keqeelkkkakeIyneylapsspkelnidkklreelekrlekeqp 85 
                 ++ ++ F ++l + +++enl+F+la+++f                          e+ +l++  +e+y+++++p+sp e+n ++++++  ek+ ++++ 
  CCD23456.1  38 PYTLEEFYKYLINCHCNENLEFLLATKKFLIPkrqrssapassteereqqrqsyIEKFDLNAWNEEVYDQFIDPESPLECNFPQNIKSMFEKCYRDNSI 136
                 678899***********************6666679**********998777665666666679********************************977 PP

                 TTTTTHHHHHHHHHHHHHHHHHHHHT CS
         RGS  86 srklfeeaqeevfellekdsypkFlk 111
                  +++     ++   +l  d+y+kFl+
  CCD23456.1 137 PKQCQILTARQHAATLLLDPYRKFLS 162
                 77777766666677777899999985 PP

>> RE_Bpu10I  Bpu10I restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   8.1e-05      0.72     167     198 ..      79     110 ..      58     115 .. 0.87
   2 ?   -1.1   0.0      0.13   1.2e+03     178     215 ..     159     196 ..     145     198 .. 0.82
   3 ?   -3.6   0.0      0.77   6.9e+03     155     171 ..     251     266 ..     245     287 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 8.1e-05
   RE_Bpu10I 167 atvegrqkkreeyveyldknpfapdvfqrlle 198
                 +++e+r+++r++y+e +d n ++ +v  ++++
  CCD23456.1  79 SSTEEREQQRQSYIEKFDLNAWNEEVYDQFID 110
                 56789***********************9986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.13
   RE_Bpu10I 178 eyveyldknpfapdvfqrllekieelledeeedeedvL 215
                 +++ y++++p++ + f+   + i ++ e +++d e  L
  CCD23456.1 159 KFLSYVNTSPIYNNSFTSSEQAITNIHEGDSPDDERSL 196
                 78999999999999999988888888888888877655 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 0.77
   RE_Bpu10I 155 akrlssniRkeyatveg 171
                 +k+++ n+Rk  +t+e 
  CCD23456.1 251 SKNIGVNLRK-SKTYEP 266
                 6788888884.445443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2384.54
//
Query:       CCD23457.1  [L=613]
Description: hypothetical protein NDAI_0B04230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-91  304.7   0.0    7.9e-91  304.3   0.0    1.2  1  HMGL-like   HMGL-like
    1.9e-28   99.0   0.6    3.7e-28   98.1   0.6    1.5  1  LeuA_dimer  LeuA allosteric (dimerisation) domain


Domain annotation for each model (and alignments):
>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.3   0.0   8.8e-95   7.9e-91       2     264 .]      60     341 ..      59     341 .. 0.99

  Alignments for each domain:
  == domain 1  score: 304.3 bits;  conditional E-value: 8.8e-95
                 -EEEE-TTTHHHHTSSS---HHHHHHHHHHHHHHT-SEE--TSGGGT.THHHHHHHS---TT-B...--EE-SSHHHHHHHHH....TT-SEEEEEEES CS
   HMGL-like   2 vkivdttLRDGeqalkaalsveeklaiakaLdeagvdeiEvgfpaaseddfevvraiakavkkar.ilalvrarekdikaavealkgagakrvhvfiat 99 
                 +++++t+LRDG+q+l +++sv++k++++++L+++g++eiEv+fp+as++df+++r++++++++   i++lv++re++ik++veal+ga+ +++h+++at
  CCD23457.1  60 PRWLSTDLRDGNQSLPDPMSVDQKKEYFHKLVDIGFKEIEVSFPSASQTDFDFTRYAVENAPDDVnIQCLVQSREHLIKRTVEALTGAKRATIHTYLAT 158
                 689**********************************************************99867********************************* PP

                 -HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-E..........TTT-BTTTBS--HHHHHHHHHHHHHH......T-SEEEEEETTS---HHHHHHHHH CS
   HMGL-like 100 selhlkaklkkdreevakkaeeavkaarslgkd..........velsledasrtdleflaevveaaeea......GatriniaDtvGvltPneaaelis 182
                 s++++ +++++++ee+++ka+ea+k++r+l+kd          +++s+e++s+t++ef++e++ea+++a      +++++n+++tv+v+tPn++a++i+
  CCD23457.1 159 SDMFRDIVFNMSQEEAVAKAVEATKLVRKLTKDdpsqqatnwtYQFSPECFSDTPVEFAVEICEAVKAAweptveNPIIFNLPATVEVATPNVYADQIE 257
                 *************************************************************************************************** PP

                 HHHHHS-...GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT-B----HHHHHHHHHHH CS
   HMGL-like 183 alkervk..dkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealgvdtgldlqklrsiaalv 264
                 +++++++  +kv++s+H+Hnd+G++va++++++ aGadrv+g+++G+Ger+Gn++l++++++++++gv+++ld+++++s+ ++v
  CCD23457.1 258 YFATHITerEKVCISTHAHNDRGCGVAASELGMLAGADRVEGCLFGNGERTGNVDLVTVALNMYTQGVSPKLDFSDIESVLEVV 341
                 *******************************************************************************99887 PP

>> LeuA_dimer  LeuA allosteric (dimerisation) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.6   4.1e-32   3.7e-28       1     132 [.     455     593 ..     455     594 .. 0.93

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 4.1e-32
                 XXXXXXXXXXXXXXXXX..XX.--EEEEEEEEEEETTCEEEEEEEEEE.TTEEEEEEEE-SSHHHHHHHHHHHHHHHT-EEEEEEEE--TT-TT--EEE CS
  LeuA_dimer   1 evtdedlealvkdelle..ae.erlkleklqvssgedelstatvklevkdgeekeasaeGnGpvdAllnAlrkalgvdikLldYsvhaitegtdaqaev 96 
                 e++++++++l+k++++   +e ++++l +++v   ++el+t t ++e+ +g+++ +++ GnGp+++l++Al+++l+v++ +++Y +h++++g+ +qa++
  CCD23457.1 455 ELKSDEITKLFKETYNYnnEEyKYVSLVDYNVEKVDSELRTLTGQVEI-NGQIVDIKGNGNGPISSLVDALSNLLNVKLAVENYTEHSLGSGSATQAAS 552
                 67899*********998655568899**********************.************************************************** PP

                 EEEEE--GGGE.....EEEEEEESSHHHHHHHHHHHHHHHH CS
  LeuA_dimer  97 rVelevddgkk.....vsgvGvdsdiveASlkAlisalnrl 132
                 +V+l++++++       +g+Gv++d+ ++S++A++s++n++
  CCD23457.1 553 YVQLRYRNDTDneltyKWGIGVSEDVGDSSVRAIFSTVNNI 593
                 *****844444578999**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 4187.74
//
Query:       CCD23458.1  [L=1094]
Description: hypothetical protein NDAI_0B04240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-76  255.9   0.7    1.1e-75  254.9   0.7    1.5  1  Syja_N         SacI homology domain
    3.2e-14   53.0   0.0    5.5e-14   52.2   0.0    1.4  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family


Domain annotation for each model (and alignments):
>> Syja_N  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.9   0.7   1.3e-79   1.1e-75       1     319 [.      61     375 ..      61     376 .. 0.84

  Alignments for each domain:
  == domain 1  score: 254.9 bits;  conditional E-value: 1.3e-79
      Syja_N   1 ygilGlirllsgsyllvitkreevgt.lkgkkeiykitevellplsseeeaekalkslkakt....ekkkeeke...leekllklleklfessgsfYFs 91 
                 +g +Gli+++ + ++ +it++++v++ ++g+ ++ ki +v++++l++++ +  +++s+        e   +++    l ++ + +l + + s+gsfYFs
  CCD23458.1  61 FGFIGLIEINGCLFVGTITGKSRVAQpIPGE-TVNKIFAVDFFCLNNNTWDFFEIDSSGYPIlpetE---SQEFqeaLPKHPCFEL-RKLLSNGSFYFS 154
                 699*******9***************88776.*************8876666666654433343322...2222122233334445.55669******* PP

      Syja_N  92 ydlDltrslqrqlekssesskslplweraderFvWNrhllkpli........ea....eldswllpviqGfveqsklklsksqkekekkevtltlisRr 178
                  ++Dlt++lq++  ++    +sl  +++++++++WN++l++++i        +a    +++ +l+ vi+Gf+e++ + ++       k +v +t is++
  CCD23458.1 155 SNFDLTSTLQNRGFNE----HSL-SVDNFEDEYMWNSFLMQEIItyrdrldaTAkqvlDDEGFLTTVIRGFAETFITFVK-------KLKVAITTISKQ 241
                 **********998763....333.36789999**********998877765511568899************76554433.......4679******** PP

      Syja_N 179 srkraGtRylrRGiddeGnvANfvEtEqilevessekeskilSfvqiRGSiPlfWsqeptlkykpkirierseeenleafkkHfekllkrYgkvvvvnL 277
                 s+kraGtR+++RG+dde+nvANfvEtE i++     ++++++Sf+qiRGSiP+fW+q+++  ++pk++i+rs e++++ f+kHf k +++Yg+v++vnL
  CCD23458.1 242 SWKRAGTRFNARGVDDEANVANFVETEFIMY-----SNHYCYSFTQIRGSIPVFWEQDTS-LINPKVQITRSMEATQPIFDKHFLKSIEKYGPVHIVNL 334
                 *******************************.....5679*****************995.67************************************ PP

      Syja_N 278 lekkgrEkkLgeayekavkklnk.lekekkklkyveFDfhkec 319
                 l++k++E +L+++y++++++++k     ++++  + FDfhke+
  CCD23458.1 335 LSTKSSEIELSQRYKDHITNSKKlR--MDDNVFWTGFDFHKET 375
                 *********************9843..468***********97 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   6.2e-18   5.5e-14       1     233 []     571     849 ..     571     849 .. 0.90

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 6.2e-18
                    EEEEESTGCHHHHTHHHHHHHHHHHHHHC......TT..SEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH........................ CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
  Exo_endo_phos   1 ltwNvngqaspalgssrrsdrladlltay......da..DvlgLQEvdddelsriplllalggflgasstsp........................ 64 
                    +t+Nvng   +       +++l ++l  +      ++   vlgLQE       +i+l++  g  l+a++t+                         
     CCD23458.1 571 GTFNVNGA--T------EKADLTKWL--FpigdkfKPdiIVLGLQE-------VIELTA--GSILNADYTKGsfwetmvteclnkfnekylllrve 647
                    6******4..3......5899*****..644666644335999***.......******..99999999999999999****************** PP

                    ............................ECSSSTTSSEEEEEECSTE..EEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHHGHHHHHHHHH CS
                    ............................xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  65 ............................tgggggggnggavlsrfpl..tslfrrtfiefndlvaalrreplaakleqlniashrdhdlvrdlqll 130
                                                tg+gg +gn+gav++rf    ts+                                            
     CCD23458.1 648 qmtslvilffvkadksnnikqvegatkkTGFGGMTGNKGAVAIRFEYgnTSF-------------------------------------------- 699
                    *************************************************999............................................ PP

                    HHHHHHHHHHHHTTSEEEE.........................................EEE-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCET CS
                    xxxxxxxxxxxxxxxxxxx.........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 131 alllqvealnadrgapviv.........................................aGDfNarpsdddsrvlrtrglalapapvglyllggg 185
                                    ++v                                         +GD+N+                              
     CCD23458.1 700 ----------------CFVnthlaagvnnvderrtdyeniekgitftrskriahhdsifwLGDMNY------------------------------ 749
                    ................88888888888888888888888888888888888888888888******.............................. PP

                    TTTTTTTTTTEB-B.........................................................................EEEEEECHH CS
                    xxxxxxxxxxxxxx.........................................................................xxxxxxxxx RF
  Exo_endo_phos 186 ptptyvtraggsrl.........................................................................Drilaspal 208
                                r+                                                                         Dri ++   
     CCD23458.1 750 ------------RInlsneevrreilqksegyidrllrfdqlsqeiaagnvfpgfkeptlkfpptykydhgtniydssekartpswtDRIVYK--- 830
                    ............*********************************************************************************... PP

                    HCCEEEEEEECCHHEECTSSCSSSB CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 209 alfrsgvlppplalvrrealtlSDH 233
                         g++++pla++++  l +SDH
     CCD23458.1 831 -----GENLHPLAYSDA-QLLISDH 849
                    .....888888888887.7778888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1094 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 7993.20
//
Query:       CCD23459.1  [L=219]
Description: hypothetical protein NDAI_0B04250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-36  122.4   0.8    9.9e-36  121.6   0.8    1.4  1  YEATS     YEATS family


Domain annotation for each model (and alignments):
>> YEATS  YEATS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.8   5.5e-40   9.9e-36       1      80 [.      40     120 ..      40     121 .. 0.98

  Alignments for each domain:
  == domain 1  score: 121.6 bits;  conditional E-value: 5.5e-40
       YEATS   1 thkWtvavrsaasddlsefikkVqFkLhetyanptrvvekpPFevtetGwGeFeiqikiffkpea.ekpltlehdLklhpe 80 
                 th Wt++vr+++++d+++fikkV+FkLhety+nptrvve pPFe+tetGwGeF+i+iki+f++ea ek l+++h L+lhp+
  CCD23459.1  40 THLWTIFVRGPQNEDITYFIKKVVFKLHETYPNPTRVVETPPFELTETGWGEFDINIKIYFVDEAnEKMLSFYHRLRLHPY 120
                 8**********99***************************************************99999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1705.08
//
Query:       CCD23460.1  [L=368]
Description: hypothetical protein NDAI_0B04260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-16   59.0   0.0    7.7e-16   58.4   0.0    1.3  1  His_Phos_1   Histidine phosphatase superfamily (branch 1)
    9.6e-15   54.2   0.0      2e-14   53.2   0.0    1.5  1  TFIIIC_sub6  TFIIIC subunit triple barrel domain


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   8.6e-20   7.7e-16       1     162 [.       6     183 ..       6     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 8.6e-20
                 EEEEE---BTT.........B--....TT----B-HHHHHHHHHHHHHHTT..S---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT- CS
  His_Phos_1   1 lyLvRHGetew.........naegrlqgrtdvpLteeGreqAealaerlag..epidaiysSplkRarqTaeliaealglpveldegLrEidfGdwegl 88 
                 +y++RHG   +               +  +dvpL e+G +qA++la++l +   +++ +++Sp+ R++qT e+i + l++p+ +d g+ E+ +      
  CCD23460.1   6 IYIARHGYRSNwlphgpyppPP---TGIDSDVPLAEHGLQQARELAHYLLSieNQPELLFTSPFYRCVQTSEPIMNLLEIPMYVDNGIGEWYMPTRPII 101
                 7899999665547665443322...5689********************9954445555***********************************99988 PP

                 B.HHHHHH..HSHHHHHHHHH-GGG-B...S-BHHHHHHHHHHHHH....HHHHHTTTSE.EEEEE-HHHHHHHHHHHHT-- CS
  His_Phos_1  89 ttaeiaeeypeeleawlrdpadvrppg...gEsledvaaRvaaale....elaarheget.vlvVsHggvirallarllglp 162
                 +t    e+ ++++    ++ +++++ +   gE+ +d+  R+++++     +++++ ++ + +l+V+H+++  al   ll+l+
  CCD23460.1 102 PTPANYETLNHFFPGKIQEGWEASIIPsdkGETEDDIFIRCKKFWPifidAVEKKFPNVEtILLVTHAATKIALGLNLLKLD 183
                 877777777776665544444444444479*************876444377777777668********9888877777665 PP

>> TFIIIC_sub6  TFIIIC subunit triple barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   2.3e-18     2e-14       2      56 ..     288     341 ..     287     343 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.2 bits;  conditional E-value: 2.3e-18
                  -EE..EEEEEESSTT----T.....T-EEEEE-TTSSS-EEEETTEEEEEEEE-- CS
  TFIIIC_sub6   2 etEtvyvtlDlsspefaeraeeeeakkdlqilgLdtenPlisigdkvfeGeweel 56 
                  + Etvyv+lDl+++++++++ e+++++ +q++gL++++Pli+ig +v+eG+w++l
   CCD23460.1 288 QMETVYVSLDLPNKNYRKKS-EIPKDAIFQYSGLEQKHPLIKIGSNVYEGTWKNL 341
                  579*****************.*******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2865.08
//
Query:       CCD23461.1  [L=261]
Description: hypothetical protein NDAI_0B04270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-34  116.7   0.0    1.2e-33  116.3   0.0    1.0  1  Maf       Maf-like protein
  ------ inclusion threshold ------
       0.18   11.3   0.1       0.25   10.8   0.1    1.2  1  ROK       ROK family


Domain annotation for each model (and alignments):
>> Maf  Maf-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.0   1.3e-37   1.2e-33       1     162 [.      18     235 ..      18     237 .. 0.90

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 1.3e-37
                 EEEEE---HHHHHHHHC.T-...EEEE------..........HHHHHHHHHHHHHHHHH............................TCEEEEEEEEE CS
         Maf   1 kliLASaSprRkelLeq.lg...fevvpsdvde..........aeelvlrlAeaKaeava............................alvigaDtvvv 57 
                 ++iL+S+SprR e+L++ +    +ev ++++ e          + e+v+++A  Kae+++                            ++vi+aDt+v+
  CCD23461.1  18 QMILGSSSPRRYEILHDeMDfrdIEVRKPNFPEkldkskyinrPLEYVKDTAGFKAEEMMeylekeeqkppkkglpnkiekvdeinkvKVVICADTIVI 116
                 58**************977765559*******9999*******889************************************99999989********* PP

                 E....CE---SSHHHHHHHHHHH...TTSEEEEEEEEEEEE.....EEE..EEEEEEEEEE.----HHHHHHHHHCTSGCCSTTS--TTCGGGGGCEEE CS
         Maf  58 l....ilgKPkdeeealemLkkl...sgrthevvTgvavlk.....ekevksfvettevtf.kelsdeeieaYvatgepldkAGaygiqgllglalver 143
                      i++KP +e+ +lemL+ +    ++  +v T+v ++      +++   f++ te++f k++++  ie+Yv++g  l++AG++ iq+l g +++++
  CCD23461.1 117 DpnnkIYEKPITESAQLEMLETFcykFDKPIRVATAVNIIIwenseKNMNSAFCKVTELHFdKNIPKTLIEEYVRSGAGLQAAGGFNIQDLNG-TIIKK 214
                 555556****************943335677*******99999*997778899********779**************************955.5**** PP

                 E..CS-HHHHHT--HHHHHHH CS
         Maf 144 i..eGsysnVvGLPlaellel 162
                 +  +++y+nV+GLP+  ++e 
  CCD23461.1 215 VqrDDDYYNVMGLPILPTYEK 235
                 98889**********999875 PP

>> ROK  ROK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   2.8e-05      0.25      57     111 ..     104     158 ..      70     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.8e-05
                 EEEEEEEESSEEETTCCEBSSGGCGCCCCTTHHHHHHHHHTS-EEEEEHHHHHHH CS
         ROK  57 liavgigspGlisdksgkivstpnitwenfdlvekleerlnvpvevenDvnaaal 111
                  ++v+i++  ++ d ++ki++ p  + ++ +++e++  +++ p++v++ vn   +
  CCD23461.1 104 KVKVVICADTIVIDPNNKIYEKPITESAQLEMLETFCYKFDKPIRVATAVNIIIW 158
                 3689***********************************************8766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2071.46
//
Query:       CCD23462.1  [L=738]
Description: hypothetical protein NDAI_0B04280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0097   16.1   0.4        8.2    7.0   0.0    4.7  6  HEAT      HEAT repeat
  ------ inclusion threshold ------
      0.027   14.5   2.9        2.7    8.0   0.2    2.9  2  Cnd1      non-SMC mitotic condensation complex subunit 1
       0.11   12.6   0.1        0.3   11.1   0.1    1.7  1  DUF4023   Protein of unknown function (DUF4023)


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.2   7.3e+03       3      14 ..     368     379 ..     367     380 .. 0.84
   2 !    7.0   0.0    0.0014       8.2       1      27 [.     383     409 ..     383     413 .. 0.87
   3 ?   -0.2   0.0      0.28   1.7e+03       4      30 ..     425     451 ..     422     452 .. 0.79
   4 ?   -0.1   0.0      0.26   1.6e+03       5      25 ..     465     485 ..     461     486 .. 0.83
   5 ?    1.6   0.0     0.074   4.4e+02       1      20 [.     500     519 ..     500     524 .. 0.86
   6 ?   -3.0   0.0       2.2   1.3e+04       7      16 ..     535     544 ..     534     544 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
                 HHHHHHHT-SSH CS
        HEAT   3 PlllkllsDpsp 14 
                 P l++l+sD+++
  CCD23462.1 368 PKLMNLISDSDA 379
                 8899*99**986 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0014
                 HHHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgal 27 
                 + P++++ l+D+++  R  ++k++  l
  CCD23462.1 383 IYPHFIQGLTDSDSLLRLQTLKSIPLL 409
                 78*****************99998655 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.28
                 HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   4 lllkllsDpspeVReaAakaLgalaev 30 
                  l k   D++ e+R  ++  L+++a+ 
  CCD23462.1 425 YLAKTQVDQDIEIRTWTIVILTKIASS 451
                 556655699********9999999986 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.26
                 HHHHHT-SSHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLg 25 
                 + k l+Dp+ + R a+++ L+
  CCD23462.1 465 FTKSLKDPDIKPRLASLYGLA 485
                 7899*****999999988875 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.074
                 HHHHHHHHHT-SSHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaA 20 
                 +l ++   l D++p VR  A
  CCD23462.1 500 ILTVIAPGLLDKEPLVRFKA 519
                 6778889999*******877 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 2.2
                 HHHT-SSHHH CS
        HEAT   7 kllsDpspeV 16 
                 kll+D++ +V
  CCD23462.1 535 KLLQDENLQV 544
                 899***9776 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2   0.00044       2.7      23     101 ..     384     465 ..     369     471 .. 0.78
   2 ?    6.8   0.4     0.001       6.2      25      95 ..     464     536 ..     458     610 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00044
        Cnd1  23 vepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteisek.senaiynllpdii 101
                  ++  ++L+D+d+  R +++  +  L   l +   ++++l  lak   D++ ++++ ++ +lt+i++  + ++  n+l + +
  CCD23462.1 384 YPHFIQGLTDSDSLLRLQTLKSIPLLtpKLTERQLNNELLRYLAKTQVDQDIEIRTWTIVILTKIASSlARSTRSNILATAF 465
                 566678999999999999999998886655555667789999***********************99975555566655544 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.001
        Cnd1  25 pLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteiseksenaiyn 95 
                   +k+LkD+d   R   ++++ak   + +   + +++l  +a  l D++p V+  a+++++++++k en++  
  CCD23462.1 464 AFTKSLKDPDIKPRLASLYGLAKSidLFEVNTIANKILTVIAPGLLDKEPLVRFKAKNLFEKYLNKLENEAKL 536
                 56899*****************98554444556667899999999*******************994444433 PP

>> DUF4023  Protein of unknown function (DUF4023)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1     5e-05       0.3       6      16 ..     230     240 ..     229     240 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5e-05
     DUF4023   6 eFVeklhetQa 16 
                 eFVeklh+tQ+
  CCD23462.1 230 EFVEKLHDTQS 240
                 9*********5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.23s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5289.65
//
Query:       CCD23463.1  [L=1064]
Description: hypothetical protein NDAI_0B04290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-20   71.0  31.1      2e-08   34.3   0.9    5.4  5  zf-H2C2_2        Zinc-finger double domain
    9.1e-18   63.7  38.5    2.2e-05   24.6   0.5    6.0  6  zf-C2H2          Zinc finger, C2H2 type
    1.9e-10   40.7  30.0     0.0032   18.2   0.4    5.3  5  zf-C2H2_4        C2H2-type zinc finger
    2.9e-06   27.1  28.3      0.015   15.2   0.2    5.5  5  zf-C2H2_6        C2H2-type zinc finger
      0.002   18.4  14.2        0.1   12.9   0.1    4.3  4  zf-C2H2_jaz      Zinc-finger double-stranded RNA-binding
     0.0042   17.4   0.1     0.0042   17.4   0.1    5.4  5  zf-met           Zinc-finger of C2H2 type
     0.0057   16.9   5.7      0.081   13.2   0.3    2.7  2  zf-Di19          Drought induced 19 protein (Di19), zinc-bind
  ------ inclusion threshold ------
      0.016   15.1   0.2      0.067   13.1   0.2    2.1  1  SpoIISB_antitox  Antitoxin SpoIISB, type II toxin-antitoxin s
       0.29   11.4   2.5        3.2    8.1   0.6    3.0  2  C1_4             TFIIH C1-like domain
        1.4    8.8   5.3         66    3.5   0.2    3.6  3  PyrI_C           Aspartate carbamoyltransferase regulatory ch
        4.1    7.6  10.5        1.7    8.9   2.6    3.6  4  Zn-ribbon_8      Zinc ribbon domain
        5.6    7.1  10.6        3.7    7.7   0.2    3.2  3  zf-CHCC          Zinc-finger domain


Domain annotation for each model (and alignments):
>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   1.4   7.8e-05      0.12       8      25 ..     593     610 ..     591     611 .. 0.88
   2 !   27.0   1.5   2.7e-09     4e-06       1      25 [.     614     638 ..     614     639 .. 0.95
   3 !   34.3   0.9   1.3e-11     2e-08       1      25 [.     642     666 ..     642     667 .. 0.96
   4 !   15.5   0.5   1.1e-05     0.017       1      25 [.     670     696 ..     670     697 .. 0.94
   5 ?    0.2   0.6      0.81   1.2e+03       1      11 [.     876     886 ..     876     891 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.8e-05
   zf-H2C2_2   8 kHtgekpyeCplCdkaFk 25 
                 +H g k +eCp+C+  F+
  CCD23463.1 593 VHEGSKQHECPYCHRLFS 610
                 5*************9886 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 2.7e-09
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 +L+ Hir+H g kp++C +C+k+F+
  CCD23463.1 614 HLEVHIRSHLGYKPFQCNFCGKRFT 638
                 6999********************8 PP

  == domain 3  score: 34.3 bits;  conditional E-value: 1.3e-11
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 nLr H+r Htgekpy C+ Cdk+F+
  CCD23463.1 642 NLRTHQRLHTGEKPYRCEICDKRFS 666
                 8***********************8 PP

  == domain 4  score: 15.5 bits;  conditional E-value: 1.1e-05
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 nL  H  +H+  kp+ C+   C+k+F+
  CCD23463.1 670 NLAAHKLTHRDVKPFVCKldNCNKTFT 696
                 7999**************999*****8 PP

  == domain 5  score: 0.2 bits;  conditional E-value: 0.81
   zf-H2C2_2   1 nLrrHirkHtg 11 
                 nL+ H+ +H +
  CCD23463.1 876 NLNSHMMSHSS 886
                 8********86 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   5.6   8.5e-07    0.0013       1      23 []     600     622 ..     600     622 .. 0.97
   2 !   21.6   1.3   1.3e-07    0.0002       1      23 []     628     650 ..     628     650 .. 0.98
   3 !   24.6   0.5   1.5e-08   2.2e-05       1      23 []     656     678 ..     656     678 .. 0.98
   4 !   18.3   0.9   1.6e-06    0.0024       1      23 []     684     709 ..     684     709 .. 0.97
   5 ?    2.0   0.3      0.22   3.4e+02      14      23 .]     875     884 ..     872     884 .. 0.88
   6 ?   -2.8   0.1       7.6   1.1e+04       8      17 ..     970     979 ..     969     980 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.5e-07
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++Cp+C++ F+++ +L++Hir+H
  CCD23463.1 600 HECPYCHRLFSQSTHLEVHIRSH 622
                 78********************9 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1.3e-07
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++C+ Cgk+F++  nL++H+r H
  CCD23463.1 628 FQCNFCGKRFTQGGNLRTHQRLH 650
                 89********************9 PP

  == domain 3  score: 24.6 bits;  conditional E-value: 1.5e-08
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y+C++C+k+F+rk nL +H  tH
  CCD23463.1 656 YRCEICDKRFSRKGNLAAHKLTH 678
                 9********************99 PP

  == domain 4  score: 18.3 bits;  conditional E-value: 1.6e-06
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 ++C+   C+k+F++  n+k+H+++ H
  CCD23463.1 684 FVCKldNCNKTFTQLGNMKAHQNKfH 709
                 89*********************999 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.22
                 HHHHHHHHCC CS
     zf-C2H2  14 snLkrHirtH 23 
                  nL++H+++H
  CCD23463.1 875 QNLNSHMMSH 884
                 69******99 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 7.6
                 EEESSHHHHH CS
     zf-C2H2   8 ksFkrksnLk 17 
                  sF+r+  L+
  CCD23463.1 970 FSFSRSGTLT 979
                 69****9997 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   4.6   6.1e-05     0.091       1      23 [.     600     622 ..     600     623 .. 0.95
   2 !   16.5   0.8   7.2e-06     0.011       1      23 [.     628     650 ..     628     651 .. 0.91
   3 !   18.2   0.4   2.2e-06    0.0032       1      23 [.     656     678 ..     656     679 .. 0.96
   4 !    8.8   0.6    0.0023       3.4       1      24 []     684     709 ..     684     709 .. 0.93
   5 ?   -0.7   0.1       2.4   3.6e+03      14      23 ..     875     884 ..     872     885 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.1e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 ++Cp+C++ Fs +++L  H+++h
  CCD23463.1 600 HECPYCHRLFSQSTHLEVHIRSH 622
                 68********************9 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 7.2e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f+C +Cgk+F+   +L++H + h
  CCD23463.1 628 FQCNFCGKRFTQGGNLRTHQRLH 650
                 89********88888*****998 PP

  == domain 3  score: 18.2 bits;  conditional E-value: 2.2e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 ++C+iC+k+Fs+k +L  H +th
  CCD23463.1 656 YRCEICDKRFSRKGNLAAHKLTH 678
                 89********************9 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0023
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkthH 24 
                 f C++  C+k+F+   +++ H ++ H
  CCD23463.1 684 FVCKLdnCNKTFTQLGNMKAHQNKFH 709
                 7899999**************99988 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 2.4
   zf-C2H2_4  14 kaLlrHlkth 23 
                 ++L++H+ +h
  CCD23463.1 875 QNLNSHMMSH 884
                 57999***99 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   3.3    0.0027         4       2      24 ..     600     622 ..     599     624 .. 0.87
   2 !   11.5   1.0   0.00016      0.23       2      24 ..     628     650 ..     628     653 .. 0.91
   3 !   15.2   0.2     1e-05     0.015       2      26 ..     656     680 ..     656     681 .. 0.96
   4 ?    0.6   0.5      0.39   5.9e+02       7      20 ..     691     704 ..     684     711 .. 0.77
   5 !    7.9   0.2    0.0021       3.2      11      26 ..     871     886 ..     870     887 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0027
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksH 24 
                 heC++C++ F+  + L+ H +sH
  CCD23463.1 600 HECPYCHRLFSQSTHLEVHIRSH 622
                 9*********9888888888888 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00016
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksH 24 
                 + C+ C+k+F  + +L++H + H
  CCD23463.1 628 FQCNFCGKRFTQGGNLRTHQRLH 650
                 79*****************8766 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 1e-05
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksHrk 26 
                 ++C +C+k+F+   +L  Hk +Hr+
  CCD23463.1 656 YRCEICDKRFSRKGNLAAHKLTHRD 680
                 99*********************97 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.39
   zf-C2H2_6   7 CsksFpslqaLggH 20 
                 C+k+F  l ++  H
  CCD23463.1 691 CNKTFTQLGNMKAH 704
                 *****988888777 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.0021
   zf-C2H2_6  11 FpslqaLggHkksHrk 26 
                 +p+lq+L+ H+ sH +
  CCD23463.1 871 LPYLQNLNSHMMSHSS 886
                 589***********76 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   1.2   0.00021      0.31       1      24 [.     599     622 ..     599     623 .. 0.96
   2 ?   -1.2   0.1       1.8   2.7e+03       2      21 ..     628     647 ..     627     648 .. 0.74
   3 !   12.9   0.1     7e-05       0.1       2      24 ..     656     678 ..     655     679 .. 0.90
   4 ?    0.5   0.4      0.53   7.9e+02       7      22 ..     691     706 ..     689     707 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
                  ECBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   1 qfYCvlCdKyFksenaldnHlkSK 24 
                  q++C++C + F+ +  l+ H++S+
   CCD23463.1 599 QHECPYCHRLFSQSTHLEVHIRSH 622
                  89*********************8 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.8
                  CBBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHl 21 
                  f C  C K F    +l++H+
   CCD23463.1 628 FQCNFCGKRFTQGGNLRTHQ 647
                  6699****997666666665 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 7e-05
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  + C++CdK F+   +l +H+ ++
   CCD23463.1 656 YRCEICDKRFSRKGNLAAHKLTH 678
                  89*****************8765 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.53
                  TTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlk 22 
                  C+K+F    ++++H++
   CCD23463.1 691 CNKTFTQLGNMKAHQN 706
                  *****98888998876 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         6     9e+03       7      17 ..     339     349 ..     339     350 .. 0.89
   2 ?    1.0   2.0      0.43   6.4e+02       3      23 ..     602     622 ..     594     623 .. 0.92
   3 ?    6.0   0.1     0.011        16       1      20 [.     628     647 ..     628     648 .. 0.92
   4 !   17.4   0.1   2.8e-06    0.0042       1      19 [.     656     674 ..     656     679 .. 0.93
   5 ?    6.0   0.3     0.011        16       6      21 ..     691     706 ..     691     706 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6
      zf-met   7 nvtfnsesqlk 17 
                 n+t+++e++++
  CCD23463.1 339 NKTTSGENVMN 349
                 89******997 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.43
      zf-met   3 CelCnvtfnsesqlksHlqGK 23 
                 C+ C++ f+  ++l+ H +++
  CCD23463.1 602 CPYCHRLFSQSTHLEVHIRSH 622
                 888***************997 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.011
      zf-met   1 fyCelCnvtfnsesqlksHl 20 
                 f+C+ C ++f+  ++l++H 
  CCD23463.1 628 FQCNFCGKRFTQGGNLRTHQ 647
                 89***************996 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 2.8e-06
      zf-met   1 fyCelCnvtfnsesqlksH 19 
                 + Ce+C+++f+ +++l +H
  CCD23463.1 656 YRCEICDKRFSRKGNLAAH 674
                 78***************** PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.011
      zf-met   6 CnvtfnsesqlksHlq 21 
                 Cn+tf+  +++k+H +
  CCD23463.1 691 CNKTFTQLGNMKAHQN 706
                 **************75 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.9     0.016        24       3      22 ..     600     620 ..     598     624 .. 0.66
   2 !   13.2   0.3   5.4e-05     0.081       3      48 ..     628     674 ..     626     680 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.016
     zf-Di19   3 ftCPyCgkeltvk.eLveHve 22 
                   CPyC + ++++  L  H+ 
  CCD23463.1 600 HECPYCHRLFSQStHLEVHIR 620
                 57*****97665404555665 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 5.4e-05
     zf-Di19   3 ftCPyCgkeltvke.LveHvedeHrveskevvCPvCaekvtk..dlvaH 48 
                 f+C +Cgk +t+   L +H +  H+ e k++ C +C ++ ++  +l+aH
  CCD23463.1 628 FQCNFCGKRFTQGGnLRTH-QRLHTGE-KPYRCEICDKRFSRkgNLAAH 674
                 99******99887615555.6669887.6789*****997755799998 PP

>> SpoIISB_antitox  Antitoxin SpoIISB, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   4.5e-05     0.067      13      50 ..     442     478 ..     434     480 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.5e-05
                      -SSSEEEEE---SEEE------HHHHHHHHHHHHHHCC CS
  SpoIISB_antitox  13 kkkpFKilKkksktsvAkYkVSPhTeRiFkkNErLidE 50 
                      +  p Ki+K +sk +  k + SP TeR F +NE + dE
       CCD23463.1 442 NSSPNKIVKPQSKPNKIKQELSP-TERFFWENENVQDE 478
                      45599******************.9********99887 PP

>> C1_4  TFIIH C1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.29   4.4e+02      14      35 ..     588     609 ..     580     623 .. 0.76
   2 ?    8.1   0.6    0.0022       3.2       1      36 [.     629     666 ..     628     679 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.29
        C1_4  14 kkkkdeeltssryrCekCkndF 35 
                 +k+k  +  s  ++C+ C++ F
  CCD23463.1 588 EKPKVVHEGSKQHECPYCHRLF 609
                 5566666778889999999988 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0022
        C1_4   1 eCygCqkkfpklakkkkdee..ltssryrCekCkndFC 36 
                 +C  C k+f+++ +  ++++  + +  yrCe C++ F 
  CCD23463.1 629 QCNFCGKRFTQGGNLRTHQRlhTGEKPYRCEICDKRFS 666
                 5999*******9999888875566789********996 PP

>> PyrI_C  Aspartate carbamoyltransferase regulatory chain, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.044        66      26      45 ..     592     611 ..     587     613 .. 0.84
   2 ?    2.4   0.1     0.099   1.5e+02      34      45 ..     628     639 ..     618     640 .. 0.88
   3 ?    2.9   0.2     0.069     1e+02      30      46 ..     652     668 ..     644     669 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.044
                 EEETTTTEEEETTT--EEEH CS
      PyrI_C  26 vedkekvklkCkYCekeise 45 
                 v+++   + +C YC + +s+
  CCD23463.1 592 VVHEGSKQHECPYCHRLFSQ 611
                 678889999******99987 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.099
                 EEETTT--EEEH CS
      PyrI_C  34 lkCkYCekeise 45 
                 ++C++C+k +++
  CCD23463.1 628 FQCNFCGKRFTQ 639
                 79******9986 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.069
                 TTTEEEETTT--EEEHH CS
      PyrI_C  30 ekvklkCkYCekeisee 46 
                  +  ++C+ C+k +s++
  CCD23463.1 652 GEKPYRCEICDKRFSRK 668
                 56779********9986 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.44   6.6e+02      23      34 ..     595     607 ..     588     611 .. 0.73
   2 ?    8.9   2.6    0.0011       1.7       6      38 ..     628     667 ..     627     669 .. 0.89
   3 ?    4.3   0.3      0.03        45       6      16 ..     656     666 ..     654     676 .. 0.88
   4 ?   -0.1   0.1      0.72   1.1e+03       9      22 ..     689     702 ..     684     707 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.44
  Zn-ribbon_8  23 daplta.CPeCgs 34 
                  + ++++ CP C+ 
   CCD23463.1 595 EGSKQHeCPYCHR 607
                  4455666****85 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0011
  Zn-ribbon_8   6 YrCeeCghefe......vlqsisdaplta.CPeCgsevrr 38 
                  ++C+ Cg++f+        q+ +  +++  C  C ++  r
   CCD23463.1 628 FQCNFCGKRFTqggnlrTHQRLHTGEKPYrCEICDKRFSR 667
                  89**************98898998889999****987766 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.03
  Zn-ribbon_8   6 YrCeeCghefe 16 
                  YrCe C+++f 
   CCD23463.1 656 YRCEICDKRFS 666
                  9*********7 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.72
  Zn-ribbon_8   9 eeCghefevlqsis 22 
                  ++C+++f++l  ++
   CCD23463.1 689 DNCNKTFTQLGNMK 702
                  36******998887 PP

>> zf-CHCC  Zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2    0.0025       3.7      26      37 .]     598     609 ..     594     609 .. 0.87
   2 ?    3.1   0.9     0.069     1e+02      27      37 .]     627     637 ..     623     637 .. 0.88
   3 ?    1.5   0.2      0.21   3.2e+02      25      37 .]     653     665 ..     648     665 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0025
                 SEEEETTTTEEE CS
     zf-CHCC  26 gpvdCgYCglrF 37 
                 ++++C+YC + F
  CCD23463.1 598 KQHECPYCHRLF 609
                 79******9988 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.069
                 EEEETTTTEEE CS
     zf-CHCC  27 pvdCgYCglrF 37 
                 p +C++Cg+rF
  CCD23463.1 627 PFQCNFCGKRF 637
                 668*******9 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.21
                 TSEEEETTTTEEE CS
     zf-CHCC  25 kgpvdCgYCglrF 37 
                 ++p +C  C++rF
  CCD23463.1 653 EKPYRCEICDKRF 665
                 67899*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1489  (0.0830498); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.48
# Mc/sec: 6720.27
//
Query:       CCD23464.1  [L=703]
Description: hypothetical protein NDAI_0B04300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-81  273.3   0.4    3.8e-56  190.7   0.0    2.6  2  DUF3589   Beta-mannosyltransferases


Domain annotation for each model (and alignments):
>> DUF3589  Beta-mannosyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.5     1e-26   1.8e-22       2     185 ..     176     405 ..     175     417 .. 0.76
   2 !  190.7   0.0   2.1e-60   3.8e-56     238     489 ..     423     673 ..     416     674 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 1e-26
     DUF3589   2 Ceelksekslevsk.aknlkadlekilkkllk.......elenseylkelkkffkeelkeqlkektiekhwyrlagssvwLeqygvhlmvsRvlyskkg 92 
                 C++l+ +++++ s+ +k++  dl ++ ++ll        e+++++  +e  k  +++ ++  +e++++k+w ++ +++ wLe  +++++ sRv+y ++g
  CCD23464.1 176 CSSLQYTNTIKYSNwTKYIGDDLVEFRRELLAlkndltkEVTSDDGASE--KKKDPKAPDLSEEEIVKKYWSKFGAAAAWLESEQCYVVYSRVMYWHSG 272
                 8888888888877634556666666666655400000003333333332..2334555565668999******************************** PP

     DUF3589  93 kknkpvvSllYaqvfdenWkelenveL.vvpteekeekek.............................................kkkfkklkfPsflp 145
                  k+ p  Sl+ aq fd+nW+e++  ++  + ++ +++ ek                                               + + +++P++l 
  CCD23464.1 273 VKKMPHTSLVRAQAFDRNWNEIKGKQIpYIDVKAPSSLEKelasldkelnladcdafldvnpeayddckvsnakgtlnakkrrenILTKHFITYPTMLD 371
                 ***********************977633455554444447899**********************************988765325556678888888 PP

     DUF3589 146 ipfyhnlkktkkryyGpEDpRillvknekgyeEPlivfNs 185
                 +pf  ++      + GpEDpR++ +   +g +EP++vfN 
  CCD23464.1 372 VPFNSKV-----DWAGPEDPRVITR-KIDGIDEPIVVFNL 405
                 8886555.....7********9866.679**********6 PP

  == domain 2  score: 190.7 bits;  conditional E-value: 2.1e-60
     DUF3589 238 kynkvkeLkkenekrakieKNWtpfiseeerkkkg...ydkkiyfvyrwenLevLkCeleeaesseCefeyklek...kkkekvgplrGGteLininel 330
                 + n++ e+k++++k +  eKNWtpf++++++ + +      +i+f+y++ ++e++kC+l+    + Ce++++ ++   ++++++g +rGGt+++++ ++
  CCD23464.1 423 RVNNIIEFKVPDHKMRYAEKNWTPFFEQSNQASGTssfSRGSINFIYSFFPMEIFKCSLD---DGICEVVFEGKDlglSDDASFGGVRGGTQFLPLPDV 518
                 568999********************9998877654446789*****************9...689********9***9*******************9 PP

     DUF3589 331 leeslkkklpknreiwiGfaRahlkkCGCgksmYRPnlvvlvkdkekykishvssfisldievlgwkkkeklCegknvliPngissweiekd.kekvka 428
                 l++       ++++ w+Gf++ h+++CGCg+++YRP l +lv+++  y+   +  f+++d+++++w+++ ++C++ n+l Pn+i++wei ++ ke+ ++
  CCD23464.1 519 LPK------VEGKQFWFGFPKLHINSCGCGEKFYRPMLSLLVEENGVYHQDLLVPFVDFDMTIPNWEEDGTKCDSINILSPNSIAYWEILDQnKEDSSI 611
                 994......589****************************************************************************9655168999* PP

     DUF3589 429 eDyltltlsvaDetveivhikgllkailksleeee.eesekeeekkkkknndnikCalkask 489
                  Dyl+l++s++D++ +i+ +kg+ ++il   ++++ + + + ++++ +  +++++C+++++k
  CCD23464.1 612 ADYLALSVSTSDSNSQIIILKGVANYILGVYKKMDiKDTFDVSKESDSIIKQSLNCVIDNAK 673
                 ****************************8444433133445555666677889999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4761.71
//
Query:       CCD23465.1  [L=273]
Description: hypothetical protein NDAI_0B04310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-31  107.7   0.0    5.9e-31  107.2   0.0    1.3  1  TRAPP     Transport protein particle (TRAPP) component
  ------ inclusion threshold ------
      0.059   13.8   0.6      0.059   13.8   0.6    2.4  3  NBD94     Nucleotide-Binding Domain 94 of RH


Domain annotation for each model (and alignments):
>> TRAPP  Transport protein particle (TRAPP) component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0   6.6e-35   5.9e-31       2     145 ..      36     266 ..      35     267 .. 0.85

  Alignments for each domain:
  == domain 1  score: 107.2 bits;  conditional E-value: 6.6e-35
       TRAPP   2 afllgelvsylqrdskdveeve.................................................................krLekmGyrvGl 35 
                 ++ll+e+++++++ ++++e +                                                                  +rL+++G++ G 
  CCD23465.1  36 EMLLNEIIPMTVSVENQLEMIAsedtskgdlkevpieklaledkeikeeksdristnyntngplyqshkmlwelsemedeekcnnisERLRNIGFQLGK 134
                 789999999999999988888888999999999999999999999999999999999999999999999999999999999999999************ PP

       TRAPP  36 rllelllarerp....retdilevlkfickdlWkllfgkqidnlktnhrgeyvltdnef.pltrf..velpke.....ls....ylaflcGiirGaLen 118
                 +l ell++ ++p    + +d+l v+kfic+d+Wk +fgkqidnlktnhrg+++l+d e+ p+++f      +      l+    +  ++ Gii+G+L++
  CCD23465.1 135 KLSELLVFTNNPnlkfKGMDLLMVMKFICRDVWKQIFGKQIDNLKTNHRGTFYLIDYEYrPIQSFslS---ETaskmeLKlaepFFELPLGIIKGVLAS 230
                 *********9985555559**********************************************552...3333344226689*************** PP

       TRAPP 119 lg.fpakVta........helps...delrgrttfeikv 145
                 lg fp +V +            +   + +++ ++f+i+v
  CCD23465.1 231 LGyFPDDVIClasfidrpP---DrakNAFSKGVSFHIQV 266
                 *956799999865553222...255589999*****998 PP

>> NBD94  Nucleotide-Binding Domain 94 of RH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2      0.33   2.9e+03      25      46 ..      50      71 ..      35      75 .. 0.79
   2 ?   13.8   0.6   6.5e-06     0.059       1      57 [.      83     141 ..      83     181 .. 0.86
   3 ?   -1.6   0.0      0.41   3.7e+03      54      68 ..     169     183 ..     159     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.33
       NBD94 25 lnEleeiekektsleevkniel 46
                 n le i  e+ts  ++k++ +
  CCD23465.1 50 ENQLEMIASEDTSKGDLKEVPI 71
                5778888899999888888765 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 6.5e-06
       NBD94   1 eeKtknivtkidkkkkiyeniekllnEleeiekekts...leevknielsYgrsLikllv 57 
                 eeK + i t+ +    +y+  +k+l El+e+e+e+     +e + ni  + g+ L++llv
  CCD23465.1  83 EEKSDRISTNYNTNGPLYQS-HKMLWELSEMEDEEKCnniSERLRNIGFQLGKKLSELLV 141
                 68999*************87.789999999999876422267899*************98 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.41
       NBD94  54 kllvqkIdeekkkae 68 
                 + + ++Id+ k++ +
  CCD23465.1 169 QIFGKQIDNLKTNHR 183
                 567888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2064.97
//
Query:       CCD23466.1  [L=632]
Description: hypothetical protein NDAI_0B04320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-26   90.0   0.1    2.8e-13   49.5   0.0    2.5  2  SH3_9     Variant SH3 domain
    2.3e-23   81.5   0.0    9.2e-11   41.2   0.0    2.7  2  SH3_1     SH3 domain
    1.1e-18   67.3   3.1    1.7e-18   66.7   0.5    2.7  2  FCH       Fes/CIP4, and EFC/F-BAR homology domain
    1.1e-13   50.7   0.0    4.3e-08   32.7   0.0    2.5  2  SH3_2     Variant SH3 domain
  ------ inclusion threshold ------
      0.057   13.7   0.5       0.86    9.9   0.0    2.4  2  SH3_3     Bacterial SH3 domain
      0.066   13.3   0.1        9.2    6.4   0.0    2.8  3  SH3_10    SH3 domain


Domain annotation for each model (and alignments):
>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0     3e-13     9e-10       1      49 []     498     549 ..     498     549 .. 0.96
   2 !   49.5   0.0   9.3e-17   2.8e-13       1      47 [.     583     630 ..     583     632 .] 0.93

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 3e-13
       SH3_9   1 AlypyepreddeLsLqrGDvitvi.eesedgWlegsl..tGrtGlvPanyve 49 
                 +ly+y+ +++de+s+++GD i ++  ++ +gW   ++  tG++GlvP +yv+
  CCD23466.1 498 VLYAYAKQDTDEISISPGDSISLLaADTGSGWTKIRNdtTGESGLVPTTYVK 549
                 89*********************978899*******889************7 PP

  == domain 2  score: 49.5 bits;  conditional E-value: 9.3e-17
       SH3_9   1 AlypyepreddeLsLqrGDvitvi.eesedgWlegsltGrtGlvPany 47 
                 A y y +  dde+s+++GDvitvi +++ +gW +g+l+G++GlvP +y
  CCD23466.1 583 AAYSYSAAGDDEISINVGDVITVIrGDDGSGWTYGELNGSKGLVPTSY 630
                 679*********************66677******************9 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   3.1e-14   9.2e-11       1      48 []     497     545 ..     497     545 .. 0.97
   2 !   37.6   0.0     4e-13   1.2e-09       2      48 .]     583     628 ..     582     628 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 3.1e-14
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksed.gWwkgrlkgtgkeGliPs 48 
                 ++lY Y+++++dE+s+ +GD i +l+ + + gW k r+++tg+ Gl+P+
  CCD23466.1 497 KVLYAYAKQDTDEISISPGDSISLLAADTGsGWTKIRNDTTGESGLVPT 545
                 68************************99999*****************6 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 4e-13
                 ESSSBEXSSTTBXEBSTTEEEEEEEECSS.SEEEEEETTSTEEEEEEG CS
       SH3_1   2 AlYDYeaeesdELsfkkGDviivleksed.gWwkgrlkgtgkeGliPs 48 
                 A Y Y a  +dE+s++ GDvi+v+  +++ gW  g+l+g   +Gl+P+
  CCD23466.1 583 AAYSYSAAGDDEISINVGDVITVIRGDDGsGWTYGELNG--SKGLVPT 628
                 99***********************9999*********5..79****5 PP

>> FCH  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.5   5.6e-22   1.7e-18       2      76 ..      15     104 ..      14     105 .. 0.87
   2 ?   -0.8   0.1      0.63   1.9e+03      14      35 ..     306     327 ..     305     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 5.6e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----TT-.......................HHHHHHHHHHHHHHHHHHHHHH CS
         FCH   2 fkvlqkrleqgialledlqeflkeRaeiEkeYakkLqkLakkylkrrkkks..................eestlvtawtvlleeteklaqshl 76 
                 f+ ++k++e+ i++l++l++f++eR+++EkeY+ kL +L++ y     kks                   e++   aw+++l +te ++++h 
  CCD23466.1  15 FQQTHKWVENNIKWLKELEQFYRERSKLEKEYSEKLTRLSSEYFT---KKSsssvplsvgdtpattpgsLEAAGIVAWNEVLAQTEMISKDHN 104
                 7899*****************************************...44447899999999999555545555555***************7 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.63
                 HHHHHHHHHHHHHHHHHHHHHH CS
         FCH  14 alledlqeflkeRaeiEkeYak 35 
                 +++ ++qe+  + a+ E++Y k
  CCD23466.1 306 KSNTEVQELKIKLAKSEQDYNK 327
                 5678888888899999999965 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.8e-06     0.011       7      56 ..     501     550 ..     496     551 .. 0.87
   2 !   32.7   0.0   1.4e-11   4.3e-08       8      54 ..     587     631 ..     583     632 .] 0.88

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.8e-06
                 -B-SCGCCB--B-TTEEEEEE..EEEECT.TEEEEEE..CCCEEEEEGCGEEE CS
       SH3_2   7 dyvgedkseLsfkkGdvikvlslgskdsd.gwwegev..gGrvGlfPsslvee 56 
                  y  +d++e+s+  Gd i +l     d + gw + ++   G  Gl+P+++v++
  CCD23466.1 501 AYAKQDTDEISISPGDSISLL---AADTGsGWTKIRNdtTGESGLVPTTYVKI 550
                 68899****************...5666689999999888***********85 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 1.4e-11
                 B-SCGCCB--B-TTEEEEEE..EEEECT.TEEEEEECCCEEEEEGCGE CS
       SH3_2   8 yvgedkseLsfkkGdvikvlslgskdsd.gwwegevgGrvGlfPsslv 54 
                 y ++  +e+s+ +Gdvi v+   + d++ gw +ge +G +Gl+P+s++
  CCD23466.1 587 YSAAGDDEISINVGDVITVI---RGDDGsGWTYGELNGSKGLVPTSYC 631
                 77888999************...555556****************987 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00029      0.86      19      55 .]     512     549 ..     510     549 .. 0.84
   2 ?    1.3   0.1      0.14   4.2e+02      19      37 ..     597     615 ..     595     631 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00029
       SH3_3  19 lpyGekVevleetgggeWykvrtddgt.eGwvssgyls 55 
                 +++G+ +++l  + g +W k+r+d++   G v ++y++
  CCD23466.1 512 ISPGDSISLLAADTGSGWTKIRNDTTGeSGLVPTTYVK 549
                 67899999999888888****88888745*99999985 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.14
       SH3_3  19 lpyGekVevleetgggeWy 37 
                 ++ G++++v+  ++g +W 
  CCD23466.1 597 INVGDVITVIRGDDGSGWT 615
                 7889*****9999999993 PP

>> SH3_10  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.8   8.5e+03      30      45 ..     299     314 ..     297     322 .. 0.77
   2 ?    3.7   0.0     0.022        65      11      59 ..     495     545 ..     488     550 .. 0.77
   3 ?    6.4   0.0    0.0031       9.2      13      59 ..     582     628 ..     570     631 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.8
      SH3_10  30 kgeevtLldnsdrekW 45 
                  +e++++++n++ ++ 
  CCD23466.1 299 DDENFIVKSNTEVQEL 314
                 5789999999987765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.022
      SH3_10  11 epiaveALcdykqaevsiekgeevtLldnsdrekWk.Vqtss.GaemtvPg 59 
                 ++  + A ++ +++e+si+ g+++ Ll     + W+ +++ + G+   vP 
  CCD23466.1 495 KNKVLYAYAKQDTDEISISPGDSISLLAADTGSGWTkIRNDTtGESGLVPT 545
                 55556677778899*********************6254433688888986 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0031
      SH3_10  13 iaveALcdykqaevsiekgeevtLldnsdrekWkVqtssGaemtvPg 59 
                 +a+ + +   ++e+si+ g+ +t+    d + W+  + +G++  vP 
  CCD23466.1 582 TAAYSYSAAGDDEISINVGDVITVIRGDDGSGWTYGELNGSKGLVPT 628
                 455566667789*********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1908  (0.10642); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4401.13
//
Query:       CCD23467.1  [L=127]
Description: hypothetical protein NDAI_0B04330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-07   29.1  10.0    1.4e-06   28.3  10.0    1.5  1  CHCH        CHCH domain
    3.1e-05   24.1   2.4    4.9e-05   23.5   2.4    1.3  1  MTCP1       Mature-T-Cell Proliferation I type
  ------ inclusion threshold ------
      0.026   14.8   4.7      0.042   14.1   4.7    1.5  1  Pet191_N    Cytochrome c oxidase assembly protein PET191
       0.31   11.1   2.7       0.35   11.0   2.7    1.1  1  Podoplanin  Podoplanin


Domain annotation for each model (and alignments):
>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3  10.0   3.2e-10   1.4e-06       1      35 []      79     113 ..      79     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 3.2e-10
                 THHHHHHHHHHHHHCTSSTTTTHHHHHHHHHHHCC CS
        CHCH   1 CgeefkeylkClkdnsdefskCrkefeafkeCvkk 35 
                 C+e  +  +kCl+ n+++ +kC+++f+a++eC+k+
  CCD23467.1  79 CQESSQMSFKCLDRNNFDRDKCHEYFDAYRECKKQ 113
                 999*****************************985 PP

>> MTCP1  Mature-T-Cell Proliferation I type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   2.4   1.1e-08   4.9e-05       1      41 [.      78     118 ..      78     125 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.1e-08
       MTCP1   1 pckkeAcaiqdCLqknnYneskCekvieaLyeCCkkfyken 41 
                 pc++++    +CL +nn++ +kC+++ +a +eC k++   +
  CCD23467.1  78 PCQESSQMSFKCLDRNNFDRDKCHEYFDAYRECKKQWLMAR 118
                 7988888888***********************99998775 PP

>> Pet191_N  Cytochrome c oxidase assembly protein PET191
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   4.7   9.5e-06     0.042      20      63 ..      79     120 ..      63     124 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 9.5e-06
    Pet191_N  20 CvkkerktpkeClkekaeelpeeCkqlrkayfeCkrgllDmrkR 63 
                 C +++ +   +Cl+++ +   ++C+++ +ay eCk++ l  r+ 
  CCD23467.1  79 C-QESSQMSFKCLDRN-NFDRDKCHEYFDAYRECKKQWLMARRN 120
                 4.445555568***99.445689**************9987765 PP

>> Podoplanin  Podoplanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.7   7.8e-05      0.35      54     104 ..       3      53 ..       1      75 [. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.8e-05
                 XXXXXXXXXXXXXXXXXXXXX-----GGG-XXXXXXXXXXXXXXXXXXXXX CS
  Podoplanin  54 gaseepyesglttlvptstesvtdlrledlptaestvkakeesqstttlnv 104
                 ++se++++sg+ t ++ +tes t  r e++ t++ tv+   + + t+t + 
  CCD23467.1   3 TTSEANKTSGKVTPITSQTESRTPPRKEQQNTTKDTVNFTPDEKDTSTFKY 53 
                 45667677999999***********************99999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1107  (0.0617435); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1033.69
//
Query:       CCD23468.1  [L=664]
Description: hypothetical protein NDAI_0B04340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-21   74.4  31.7    3.2e-06   26.7   2.5    9.3  9  TPR_1         Tetratricopeptide repeat
      1e-17   62.7  34.2    0.00028   20.8   1.2   10.7 11  TPR_2         Tetratricopeptide repeat
    3.9e-16   57.8  23.1      0.014   15.6   0.5    9.5  9  TPR_8         Tetratricopeptide repeat
    4.7e-14   52.7   1.4       0.44   11.2   0.0    5.6  5  TPR_16        Tetratricopeptide repeat
    1.3e-12   47.2  22.4    0.00048   19.8   0.2    6.9  7  TPR_11        TPR repeat
    8.5e-12   45.4  16.3      0.035   14.6   1.8    5.9  5  TPR_19        Tetratricopeptide repeat
    8.6e-09   35.2  20.0      0.001   19.3   0.1    6.8  6  TPR_17        Tetratricopeptide repeat
    3.1e-08   33.8   9.9       0.15   13.0   0.1    7.5  8  TPR_14        Tetratricopeptide repeat
    1.3e-07   31.8  15.3       0.27   11.6   0.1    6.5  6  TPR_12        Tetratricopeptide repeat
    3.3e-05   24.0  18.0      0.061   13.5   0.4    5.1  4  ANAPC3        Anaphase-promoting complex, cyclosome, subunit 
    0.00011   21.9  10.9       0.21   11.7   0.1    6.0  6  TPR_7         Tetratricopeptide repeat
    0.00042   20.4   0.8       0.59   10.3   0.0    3.8  3  TPR_9         Tetratricopeptide repeat
    0.00081   19.0   0.0        0.7    9.5   0.2    3.4  3  HrpB1_HrpK    Bacterial type III secretion protein (HrpB1_Hrp
  ------ inclusion threshold ------
      0.014   14.8   3.0       0.26   10.6   1.6    3.1  3  TPR_MalT      MalT-like TPR region
      0.029   13.3   0.1      0.029   13.3   0.1    4.7  5  NARP1         NMDA receptor-regulated protein 1
      0.035   13.8   1.0      0.061   13.0   1.0    1.3  1  SARAF         SOCE-associated regulatory factor of calcium ho
       0.31   11.1   2.9        1.3    9.1   0.1    3.5  3  Exonuc_VII_S  Exonuclease VII small subunit
       0.33   10.6  12.5        3.4    7.3   0.0    5.1  5  TPR_21        Tetratricopeptide repeat-like domain
        1.2    8.7  14.6        1.9    8.0  14.6    1.2  1  SR-25         Nuclear RNA-splicing-associated protein
        2.9    8.3   8.4        2.5    8.5   1.1    3.6  2  TPR_20        Tetratricopeptide repeat
        4.2    7.1  13.5        0.6    9.9   8.7    2.1  2  SpoIIIAH      SpoIIIAH-like protein


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   2.5   3.7e-09   3.2e-06       1      33 [.     158     190 ..     158     191 .. 0.95
   2 !   15.8   0.1   1.1e-05    0.0093       9      34 .]     199     224 ..     192     224 .. 0.90
   3 !   15.1   0.6   1.7e-05     0.015       2      24 ..     226     248 ..     225     249 .. 0.94
   4 ?    1.0   0.0      0.52   4.4e+02      23      33 ..     396     406 ..     393     407 .. 0.82
   5 ?    5.3   0.0     0.022        19      22      34 .]     431     443 ..     430     443 .. 0.94
   6 !   21.2   0.0   2.1e-07   0.00018       1      34 []     444     477 ..     444     477 .. 0.94
   7 ?    0.3   0.4      0.82     7e+02      10      25 ..     521     536 ..     519     541 .. 0.53
   8 ?    0.4   0.0       0.8   6.8e+02      23      33 ..     577     587 ..     576     588 .. 0.84
   9 ?    1.9   0.0      0.27   2.3e+02       6      31 ..     594     619 ..     590     622 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 3.7e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPn 33 
                 ak l+n+Gn yfk ++ + A++yye AL+l+ +
  CCD23468.1 158 AKELKNKGNQYFKSKDNENAIKYYEYALRLDQD 190
                 7889***************************87 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.1e-05
                 HHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   9 nayfklgkydeAleyyekALelnPnn 34 
                 ++yf ++++d+ +e  +kALel P++
  CCD23468.1 199 ACYFAMNQLDKVIESSNKALELKPDY 224
                 7***********************97 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHHTT-HHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyy 24 
                 kal +++nay  lg+ +eAl ++
  CCD23468.1 226 KALLRRANAYEALGNNKEALYDF 248
                 89******************998 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.52
                 HHHHHHHHSTT CS
       TPR_1  23 yyekALelnPn 33 
                 + +kA+ l+P 
  CCD23468.1 396 DLQKAIDLYPR 406
                 78999999995 PP

  == domain 5  score: 5.3 bits;  conditional E-value: 0.022
                 HHHHHHHHHSTTH CS
       TPR_1  22 eyyekALelnPnn 34 
                 +y++kA +lnPn+
  CCD23468.1 431 KYFDKATTLNPNF 443
                 79*********97 PP

  == domain 6  score: 21.2 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a ++y +G++++ ++k+deA+ ++ kA el+ +n
  CCD23468.1 444 APTYYHRGQLLLVNQKFDEAETFFLKAKELDDSN 477
                 678***************************9776 PP

  == domain 7  score: 0.3 bits;  conditional E-value: 0.82
                 HHHHTT-HHHHHHHHH CS
       TPR_1  10 ayfklgkydeAleyye 25 
                 ++  +g+++ A + y+
  CCD23468.1 521 ILADKGELEAAMKQYD 536
                 4455555555555554 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.8
                 HHHHHHHHSTT CS
       TPR_1  23 yyekALelnPn 33 
                   ekA el+P 
  CCD23468.1 577 LLEKACELDPR 587
                 579*******6 PP

  == domain 9  score: 1.9 bits;  conditional E-value: 0.27
                 HHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   6 nlGnayfklgkydeAleyyekALeln 31 
                  l+++ ++ ++ d A++ +e+   l 
  CCD23468.1 594 SLAQLKLQTEDIDTAIALFEETADLA 619
                 689999999**********9976665 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.8   4.1e+03      20      32 ..      34      46 ..      33      47 .. 0.77
   2 !   20.8   1.2   3.3e-07   0.00028       1      33 [.     158     190 ..     158     191 .. 0.93
   3 !   10.6   0.0   0.00059       0.5       3      34 .]     193     224 ..     191     224 .. 0.94
   4 !   12.4   0.6   0.00016      0.14       2      24 ..     226     248 ..     225     249 .. 0.93
   5 ?    1.5   0.0      0.48   4.1e+02      20      33 ..     393     406 ..     374     407 .. 0.80
   6 ?    3.0   0.0      0.16   1.4e+02      22      33 ..     431     442 ..     430     443 .. 0.92
   7 !   18.7   0.0   1.5e-06    0.0013       3      33 ..     446     476 ..     444     477 .. 0.92
   8 ?    3.7   0.0     0.098        83       4      33 ..     481     510 ..     478     511 .. 0.90
   9 ?    2.5   1.1      0.23     2e+02       8      30 ..     519     541 ..     517     544 .. 0.87
  10 ?    2.1   0.0      0.31   2.7e+02      22      33 ..     576     587 ..     575     588 .. 0.88
  11 ?    2.8   0.1      0.19   1.6e+02       7      33 ..     595     621 ..     590     622 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.8
       TPR_2 20 AleafekAleldP 32
                A  ++++  +l P
  CCD23468.1 34 AYYYYNQLQKLQP 46
                6678888888888 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 3.3e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+ l n G+ y+k++d e A++++e Al+ld +
  CCD23468.1 158 AKELKNKGNQYFKSKDNENAIKYYEYALRLDQD 190
                 67899*************************975 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00059
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                  + n+  +y++++++++ +e  +kAlel P++
  CCD23468.1 193 FYSNISACYFAMNQLDKVIESSNKALELKPDY 224
                 58999*************************85 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 0.00016
       TPR_2   2 ealynlGlayyklgdyeeAleaf 24 
                 +al ++++ay++lg+ +eAl +f
  CCD23468.1 226 KALLRRANAYEALGNNKEALYDF 248
                 7999****************988 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.48
       TPR_2  20 AleafekAleldPn 33 
                  + +++kA+ l+P+
  CCD23468.1 393 SETDLQKAIDLYPR 406
                 567899*****996 PP

  == domain 6  score: 3.0 bits;  conditional E-value: 0.16
       TPR_2  22 eafekAleldPn 33 
                 ++f+kA  l+Pn
  CCD23468.1 431 KYFDKATTLNPN 442
                 89*********9 PP

  == domain 7  score: 18.7 bits;  conditional E-value: 1.5e-06
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                  +y +G++++ +++++eA+ +f kA eld  
  CCD23468.1 446 TYYHRGQLLLVNQKFDEAETFFLKAKELDDS 476
                 79**************************976 PP

  == domain 8  score: 3.7 bits;  conditional E-value: 0.098
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 + +l++++y++  ++++ e+f++A    P+
  CCD23468.1 481 YIQLACVAYYNSTFKKCQELFDEARTKFPT 510
                 7899********************998886 PP

  == domain 9  score: 2.5 bits;  conditional E-value: 0.23
       TPR_2   8 GlayyklgdyeeAleafekAlel 30 
                 +++++ +g++e A + ++ A +l
  CCD23468.1 519 AEILADKGELEAAMKQYDIAYRL 541
                 789999***********998887 PP

  == domain 10  score: 2.1 bits;  conditional E-value: 0.31
       TPR_2  22 eafekAleldPn 33 
                 e++ekA eldP+
  CCD23468.1 576 ELLEKACELDPR 587
                 689********7 PP

  == domain 11  score: 2.8 bits;  conditional E-value: 0.19
       TPR_2   7 lGlayyklgdyeeAleafekAleldPn 33 
                 l+++ ++  d + A+++fe+   l+ +
  CCD23468.1 595 LAQLKLQTEDIDTAIALFEETADLART 621
                 88888999************9888765 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.5   1.6e-05     0.014       6      33 ..     163     190 ..     163     191 .. 0.91
   2 !   13.5   0.1   7.2e-05     0.062       4      34 .]     194     224 ..     193     224 .. 0.94
   3 ?    6.0   0.3     0.018        16       2      20 ..     226     244 ..     225     245 .. 0.92
   4 ?   -1.8   0.0       5.8   4.9e+03      22      32 ..     395     405 ..     392     406 .. 0.81
   5 ?    2.6   0.0      0.24     2e+02      22      33 ..     431     442 ..     430     443 .. 0.92
   6 !   15.0   0.0   2.5e-05     0.021       1      33 [.     444     476 ..     444     477 .. 0.94
   7 ?    3.6   0.3      0.11        93       7      25 ..     518     536 ..     516     544 .. 0.84
   8 ?    3.7   0.0       0.1        87      15      32 ..     569     586 ..     567     588 .. 0.85
   9 ?    5.6   0.1     0.025        22       5      30 ..     593     618 ..     589     622 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.6e-05
                 HHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldpd 33 
                 n+g+ y+k +d e+A++yye al+ld+d
  CCD23468.1 163 NKGNQYFKSKDNENAIKYYEYALRLDQD 190
                 57777********************987 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 7.2e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 y n++ +y+ ++++++ +e+ +kalel+pd+
  CCD23468.1 194 YSNISACYFAMNQLDKVIESSNKALELKPDY 224
                 779999***********************85 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.018
                 CHHHHHHHHHHHTT-HHHH CS
       TPR_8   2 eayynlgsiylklgdyeeA 20 
                 +a+++ +++y+ lg+ +eA
  CCD23468.1 226 KALLRRANAYEALGNNKEA 244
                 7999*************99 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 5.8
                 HHHHHHHHHHH CS
       TPR_8  22 eyyekaleldp 32 
                   ++ka++l p
  CCD23468.1 395 TDLQKAIDLYP 405
                 67999*99988 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHH CS
       TPR_8  22 eyyekaleldpd 33 
                 +y+ ka++l+p+
  CCD23468.1 431 KYFDKATTLNPN 442
                 8**********8 PP

  == domain 6  score: 15.0 bits;  conditional E-value: 2.5e-05
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a+ yy+ g+++l  ++++eA+ ++ ka eld +
  CCD23468.1 444 APTYYHRGQLLLVNQKFDEAETFFLKAKELDDS 476
                 689***************************975 PP

  == domain 7  score: 3.6 bits;  conditional E-value: 0.11
                 HHHHHHHTT-HHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyye 25 
                  + i+ ++g++e+A++ y 
  CCD23468.1 518 YAEILADKGELEAAMKQYD 536
                 58899**********9886 PP

  == domain 8  score: 3.7 bits;  conditional E-value: 0.1
                 T-HHHHHHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekaleldp 32 
                 ++++ + e +eka+eldp
  CCD23468.1 569 ENFDTMTELLEKACELDP 586
                 678888899********9 PP

  == domain 9  score: 5.6 bits;  conditional E-value: 0.025
                 HHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekalel 30 
                   l+++ l+++d++ A++ +e+  +l
  CCD23468.1 593 ISLAQLKLQTEDIDTAIALFEETADL 618
                 679*****************985555 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0055       4.7       3      27 ..     164     188 ..     163     208 .. 0.87
   2 !    8.9   0.1    0.0028       2.4      23      54 ..     217     245 ..     211     249 .. 0.90
   3 !   11.2   0.0   0.00051      0.44      19      64 ..     432     474 ..     431     477 .. 0.84
   4 !   11.0   0.0   0.00063      0.54       3      62 ..     484     540 ..     482     545 .. 0.85
   5 !    7.4   0.0    0.0084       7.2      10      63 ..     568     618 ..     567     622 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0055
      TPR_16   3 laraalragdyddAaaaleaalkrd 27 
                 +++ +++++d + A++++e al++d
  CCD23468.1 164 KGNQYFKSKDNENAIKYYEYALRLD 188
                 67889******************99 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0028
      TPR_16  23 alkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 al++    Pd   All +++a+ ++g+ +eA+
  CCD23468.1 217 ALELK---PDYSKALLRRANAYEALGNNKEAL 245
                 78888...***********************8 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00051
      TPR_16  19 aleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 +++ a+ ++   P  a  ++++g+++l+++ ++eA+ ++++a + +
  CCD23468.1 432 YFDKATTLN---PNFAPTYYHRGQLLLVNQKFDEAETFFLKAKELD 474
                 567777777...8888889**********************97655 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00063
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalr 62 
                 la  a+++  + + ++++++a+ ++   P  +e   +++++++ +g+l++A  +y+ a+r
  CCD23468.1 484 LACVAYYNSTFKKCQELFDEARTKF---PTLPEVPTFYAEILADKGELEAAMKQYDIAYR 540
                 667777777777778999*******...777779999*******************9996 PP

  == domain 5  score: 7.4 bits;  conditional E-value: 0.0084
      TPR_16  10 agdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 + ++d   ++le a ++d   P+  +A   l+++ l+  + + A+al+++ ++ 
  CCD23468.1 568 QENFDTMTELLEKACELD---PRSEQAKISLAQLKLQTEDIDTAIALFEETADL 618
                 567777778899999999...9999999*****************999997665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.7   1.2e-05      0.01       1      26 [.     165     190 ..     165     196 .. 0.96
   2 !   19.8   0.2   5.6e-07   0.00048       4      42 .]     201     239 ..     200     239 .. 0.98
   3 ?   -2.7   0.0       5.9     5e+03      16      25 ..     396     405 ..     395     406 .. 0.74
   4 !    9.2   0.0    0.0011      0.94      18      38 ..     434     454 ..     432     458 .. 0.91
   5 ?    1.2   0.1      0.36   3.1e+02       8      35 ..     458     485 ..     455     491 .. 0.86
   6 !    8.5   0.7    0.0018       1.5       3      31 ..     521     549 ..     519     553 .. 0.81
   7 ?    3.8   0.0     0.055        47      17      34 ..     578     595 ..     575     602 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.2e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPd 26 
                 G+ y++  ++e+Ai+ Y+ Al+ld+d
  CCD23468.1 165 GNQYFKSKDNENAIKYYEYALRLDQD 190
                 9***********************98 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 5.6e-07
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 y++ +++++ ie+ +kAl+l+Pd+  a++ +++ay ++G
  CCD23468.1 201 YFAMNQLDKVIESSNKALELKPDYSKALLRRANAYEALG 239
                 99**********************************998 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.9
      TPR_11  16 aYkkAlkldP 25 
                 +++kA++l P
  CCD23468.1 396 DLQKAIDLYP 405
                 6789998865 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.0011
      TPR_11  18 kkAlkldPdnaeayynLGlay 38 
                  kA  l+P++a  yy++G+++
  CCD23468.1 434 DKATTLNPNFAPTYYHRGQLL 454
                 69****************987 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.36
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLG 35 
                 +k++eA + + kA +ld +n+  y  L+
  CCD23468.1 458 QKFDEAETFFLKAKELDDSNVYPYIQLA 485
                 58899999999************99887 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.0018
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeay 31 
                 ++ ++G++e+A+++Y  A +l   +  ++
  CCD23468.1 521 ILADKGELEAAMKQYDIAYRLETAYKYIH 549
                 789************99988877666665 PP

  == domain 7  score: 3.8 bits;  conditional E-value: 0.055
      TPR_11  17 YkkAlkldPdnaeayynL 34 
                 ++kA++ldP +  a   L
  CCD23468.1 578 LEKACELDPRSEQAKISL 595
                 79*******988775555 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1    0.0011      0.92       3      43 ..     170     209 ..     168     213 .. 0.79
   2 !   14.6   1.8   4.1e-05     0.035       5      44 ..     205     244 ..     203     245 .. 0.86
   3 !    9.1   0.0    0.0022       1.9      12      56 ..     431     475 ..     430     485 .. 0.88
   4 ?    4.5   0.0     0.057        49      11      46 ..     498     533 ..     488     539 .. 0.89
   5 !   13.9   1.3     7e-05     0.059      12      57 ..     576     621 ..     568     630 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0011
      TPR_19   3 aegdyaeAlalleqalqedpk...naearllLAeallalgqlde 43 
                 +++d ++A++++e+al  d +   ++    +   +++a++qld+
  CCD23468.1 170 KSKDNENAIKYYEYALRLDQDpvfYS----NISACYFAMNQLDK 209
                 678999*********99977544555....5555********98 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 4.1e-05
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeA 44 
                 ++++  ++   +al+ +p+++ a+l+ A+a+ alg+ +eA
  CCD23468.1 205 NQLDKVIESSNKALELKPDYSKALLRRANAYEALGNNKEA 244
                 566666666779***************************9 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0022
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 +++ +a + +p+ a   +   ++ll +  +deAe    ++ e d 
  CCD23468.1 431 KYFDKATTLNPNFAPTYYHRGQLLLVNQKFDEAETFFLKAKELDD 475
                 6899999***************************99988877765 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.057
      TPR_19  11 lalleqalqedpknaearllLAeallalgqldeAea 46 
                 ++l+ +a ++ p  +e+   +Ae+l   g+l++A++
  CCD23468.1 498 QELFDEARTKFPTLPEVPTFYAEILADKGELEAAMK 533
                 689999999*************************87 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 7e-05
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 +lle+a + dp ++ a++ LA++ l++ ++d A+al ++  + ++ 
  CCD23468.1 576 ELLEKACELDPRSEQAKISLAQLKLQTEDIDTAIALFEETADLART 621
                 79**********************************9988777665 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.7   8.2e-06     0.007       4      33 ..     216     245 ..     215     246 .. 0.95
   2 ?   -0.9   0.1       3.3   2.8e+03       3      16 ..     398     412 ..     397     423 .. 0.78
   3 !   19.3   0.1   1.2e-06     0.001       2      33 ..     433     464 ..     432     465 .. 0.95
   4 ?    3.2   0.1      0.16   1.4e+02       2      25 ..     467     490 ..     466     499 .. 0.79
   5 ?   -0.6   0.0       2.6   2.2e+03      19      32 ..     518     531 ..     515     538 .. 0.72
   6 ?    3.7   0.0      0.11        95       1      33 [.     577     609 ..     577     610 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.2e-06
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtAr 33 
                 kalel P++++a+  +A++++ +G+ ++A+
  CCD23468.1 216 KALELKPDYSKALLRRANAYEALGNNKEAL 245
                 9**************************997 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 3.3
      TPR_17   3 lkaleldPn.naday 16 
                 +ka++l+P  n++ y
  CCD23468.1 398 QKAIDLYPRpNSYIY 412
                 799999987666666 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 1.2e-06
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 + ka  l+Pn a+ y+ +++lll n ++++A+
  CCD23468.1 433 FDKATTLNPNFAPTYYHRGQLLLVNQKFDEAE 464
                 89****************************97 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.16
      TPR_17   2 ylkaleldPnnadaynnLAelllk 25 
                 +lka eld +n+++y +LA + + 
  CCD23468.1 467 FLKAKELDDSNVYPYIQLACVAYY 490
                 77888999***********97554 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 2.6
      TPR_17  19 LAelllknGdlmtA 32 
                 +Ae+l+ +G+l+ A
  CCD23468.1 518 YAEILADKGELEAA 531
                 57777777777766 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.11
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 l++ka eldP +  a   LA+l l+  d +tA+
  CCD23468.1 577 LLEKACELDPRSEQAKISLAQLKLQTEDIDTAI 609
                 689******************999999999997 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       3.2   2.8e+03       9      31 ..     166     188 ..     161     192 .. 0.81
   2 ?    4.6   0.0     0.082        70      11      42 ..     201     232 ..     197     233 .. 0.91
   3 ?    7.1   0.2     0.014        12       2      21 ..     226     245 ..     225     246 .. 0.93
   4 ?    4.8   0.0     0.072        62       3      35 ..     446     478 ..     430     485 .. 0.82
   5 ?   -0.0   0.0       2.6   2.2e+03      17      43 ..     494     520 ..     491     521 .. 0.85
   6 ?    4.9   0.3     0.066        57       7      30 ..     518     541 ..     516     549 .. 0.88
   7 !   13.0   0.1   0.00017      0.15      14      44 .]     568     598 ..     557     598 .. 0.87
   8 ?    4.1   0.1      0.12     1e+02       6      26 ..     594     614 ..     590     624 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 3.2
      TPR_14   9 eallalGdpdeAiallrralala 31 
                   ++ + d + Ai++++ al+l+
  CCD23468.1 166 NQYFKSKDNENAIKYYEYALRLD 188
                 678999999*******9777765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.082
      TPR_14  11 llalGdpdeAiallrralalaPddaeawllla 42 
                 ++a  ++d+ i+  ++al+l Pd   a+l+ a
  CCD23468.1 201 YFAMNQLDKVIESSNKALELKPDYSKALLRRA 232
                 78999********************9999877 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.014
      TPR_14   2 eallalaeallalGdpdeAi 21 
                 +all++a a++alG+ +eA+
  CCD23468.1 226 KALLRRANAYEALGNNKEAL 245
                 699**************996 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.072
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdda 35 
                  ++ ++++ll ++++deA++ + +a +l+ ++ 
  CCD23468.1 446 TYYHRGQLLLVNQKFDEAETFFLKAKELDDSNV 478
                 57899999999999****999999866666555 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 2.6
      TPR_14  17 pdeAiallrralalaPddaeawlllaq 43 
                 +++  +l+++a  ++P+ +e+ +++a+
  CCD23468.1 494 FKKCQELFDEARTKFPTLPEVPTFYAE 520
                 6677899**********9999888886 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.066
      TPR_14   7 laeallalGdpdeAiallrralal 30 
                 +ae+l+  G++++A++ ++ a +l
  CCD23468.1 518 YAEILADKGELEAAMKQYDIAYRL 541
                 899***************998665 PP

  == domain 7  score: 13.0 bits;  conditional E-value: 0.00017
      TPR_14  14 lGdpdeAiallrralalaPddaeawlllaql 44 
                 ++++d++ +ll++a++l+P +++a + laql
  CCD23468.1 568 QENFDTMTELLEKACELDPRSEQAKISLAQL 598
                 899**************************97 PP

  == domain 8  score: 4.1 bits;  conditional E-value: 0.12
      TPR_14   6 alaeallalGdpdeAiallrr 26 
                  la++ l+ +d d+Aial+++
  CCD23468.1 594 SLAQLKLQTEDIDTAIALFEE 614
                 5899***************97 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00031      0.27       8      75 ..     163     221 ..     158     223 .. 0.88
   2 ?    4.5   0.4     0.049        42       4      25 ..     226     247 ..     223     249 .. 0.76
   3 ?   -1.5   0.0       3.7   3.1e+03       3      33 ..     374     404 ..     372     410 .. 0.72
   4 !    7.3   0.0    0.0066       5.6       5      33 ..     446     474 ..     442     505 .. 0.88
   5 ?   -0.7   0.2       2.1   1.8e+03       4      23 ..     520     539 ..     516     545 .. 0.54
   6 !   10.6   0.4   0.00064      0.55       8      52 ..     594     635 ..     588     644 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00031
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 n ++ +++ ++ + A++++e al++ +             + n++ +y+a++++++ +e  ++al+++
  CCD23468.1 163 NKGNQYFKSKDNENAIKYYEYALRLDQ---------DPVFYSNISACYFAMNQLDKVIESSNKALELK 221
                 889999****************99992.........23599************************987 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.049
      TPR_12   4 talnnlaavlrrlgrydeAlel 25 
                 +al ++a+++ +lg+  eAl  
  CCD23468.1 226 KALLRRANAYEALGNNKEALYD 247
                 6777889999999999999865 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.7
      TPR_12   3 atalnnlaavlrrlgrydeAlellekaleia 33 
                 a+al   +++ +   ++  +++ l+ka++++
  CCD23468.1 374 AIALEYSGVFKFLKFDLLGSETDLQKAIDLY 404
                 6666556777777777888888888888877 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0066
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleia 33 
                 ++++++++l+  +++deA++++ ka e+ 
  CCD23468.1 446 TYYHRGQLLLVNQKFDEAETFFLKAKELD 474
                 78899999****************99886 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 2.1
      TPR_12   4 talnnlaavlrrlgrydeAl 23 
                  +l   +++++++++yd A 
  CCD23468.1 520 EILADKGELEAAMKQYDIAY 539
                 33334555555555555554 PP

  == domain 6  score: 10.6 bits;  conditional E-value: 0.00064
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLg 52 
                  la++ ++ ++ d A++l+e+  ++ar +   d+ l att    +
  CCD23468.1 594 SLAQLKLQTEDIDTAIALFEETADLARTY--QDK-LQATTFAEAA 635
                 58999999999999999999999999877..445.5666666555 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   3.0   0.00068      0.58       4      76 ..     173     245 ..     170     249 .. 0.91
   2 ?   -1.3   0.0       3.1   2.6e+03       3      25 ..     345     367 ..     343     375 .. 0.73
   3 ?    6.3   0.4     0.013        11       5      68 ..     460     524 ..     430     536 .. 0.61
   4 !   13.5   0.4   7.2e-05     0.061       2      54 ..     568     621 ..     567     643 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00068
                 -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3   4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAi 76 
                 + +nAi ++e +l +  ++p      + c++ ++q ++ +e  +ka +l++   ++++  A ++ +L++ +eA+
  CCD23468.1 173 DNENAIKYYEYAL-RLDQDPVFYSNISACYFAMNQLDKVIESSNKAlELKPDYSKALLRRANAYEALGNNKEAL 245
                 568**********.777777777778***********************************************8 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.1
                 T-HHHHHHHHHHHH.HHH--HHH CS
      ANAPC3   3 nnyknAiflaerllaaetesped 25 
                 + +k  +++ e+ll++e +++++
  CCD23468.1 345 HFIKANELFMEKLLSSEDNDENS 367
                 56677788899999777777776 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHH CS
      ANAPC3   5 yknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllk 68 
                 +++A+ ++ ++ + +  + +    lA + y n+ +k+++el+++a  + ++ +++   +A+ l +
  CCD23468.1 460 FDEAETFFLKAKELDDSNVYPYIQLACVAYYNSTFKKCQELFDEArTKFPTLPEVPTFYAEILAD 524
                 44444444444433333333333457777777777777777777755555555666666666655 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 7.2e-05
                 TT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC CS
      ANAPC3   2 qnnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnsk 54 
                 q+n+++   l+e++++ +++s+++   lA+  +++++ ++A+ l++++ +l+ +
  CCD23468.1 568 QENFDTMTELLEKACELDPRSEQAKISLAQLKLQTEDIDTAIALFEETaDLART 621
                 789999999***********************************9999666554 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   0.00025      0.21       4      32 ..     163     191 ..     160     191 .. 0.83
   2 ?   -1.1   0.0         3   2.5e+03       2      26 ..     194     218 ..     194     225 .. 0.77
   3 ?    4.5   0.4     0.047        40       1      19 [.     227     245 ..     227     245 .. 0.93
   4 ?   -2.2   0.0       6.5   5.6e+03      14      22 ..     396     404 ..     392     406 .. 0.87
   5 ?    3.1   0.0      0.14   1.2e+02      13      33 ..     458     476 ..     446     479 .. 0.75
   6 ?    4.1   0.2     0.066        57       5      29 ..     595     619 ..     593     627 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdp 32 
                 n ++ y++  d e+Ai++ye +L+l+ dp
  CCD23468.1 163 NKGNQYFKSKDNENAIKYYEYALRLDQDP 191
                 6666699999***********88888876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 3
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsL 26 
                 ++n+  +y+++++ ++ ie   ++L
  CCD23468.1 194 YSNISACYFAMNQLDKVIESSNKAL 218
                 6788899********9998665655 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.047
       TPR_7   1 aLlnLarlysrlGdyeeAi 19 
                 aLl+ a++y++lG+ +eA+
  CCD23468.1 227 ALLRRANAYEALGNNKEAL 245
                 79999************95 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 6.5
       TPR_7  14 dyeeAiely 22 
                 d ++Ai+ly
  CCD23468.1 396 DLQKAIDLY 404
                 789****99 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.14
       TPR_7  13 GdyeeAielyeqsLaltkdpe 33 
                 ++++eA++++ +  a + d++
  CCD23468.1 458 QKFDEAETFFLK--AKELDDS 476
                 79**********..6666655 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.066
       TPR_7   5 LarlysrlGdyeeAielyeqsLalt 29 
                 La+l  +  d ++Ai l+e+   l+
  CCD23468.1 595 LAQLKLQTEDIDTAIALFEETADLA 619
                 899999999**********954444 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.07        60       5      28 ..     168     191 ..     166     192 .. 0.89
   2 !   10.3   0.0   0.00069      0.59       3      52 ..     199     248 ..     197     251 .. 0.94
   3 ?    1.5   0.3      0.41   3.5e+02       8      64 ..     568     624 ..     562     635 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.07
       TPR_9   5 aireedweralavverllllaPdd 28 
                 +  ++d+e a++++e  l l+ d+
  CCD23468.1 168 YFKSKDNENAIKYYEYALRLDQDP 191
                 67899***************9886 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00069
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladL 52 
                 a++   ++ ++ ++ ++  l l+Pd    ++ R+ +++ lG+ ++Al d+
  CCD23468.1 199 ACYFAMNQLDKVIESSNKALELKPDYSKALLRRANAYEALGNNKEALYDF 248
                 77888999***************************************998 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.41
       TPR_9   8 eedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapd 64 
                 +e+++ + + +e    l+P++ +     ++l  q +++ +A+a +e  ++la   +d
  CCD23468.1 568 QENFDTMTELLEKACELDPRSEQAKISLAQLKLQTEDIDTAIALFEETADLARTYQD 624
                 577777777888888888888888889999999999999999999988888775554 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.26   2.3e+02      33      68 ..     432     467 ..     410     479 .. 0.77
   2 ?    3.6   0.0     0.055        47       5      66 ..     472     533 ..     468     536 .. 0.90
   3 !    9.5   0.2   0.00082       0.7      23      73 ..     567     617 ..     546     635 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.26
  HrpB1_HrpK  33 lLdalrvLrPevaeldllegvlliergrweeAlrlL 68 
                   d    L P++a      g+ll+ +++++eA   +
  CCD23468.1 432 YFDKATTLNPNFAPTYYHRGQLLLVNQKFDEAETFF 467
                 5677889************************97665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.055
  HrpB1_HrpK   5 qcskelvggLievlslalasedtedaellLdalrvLrPevaeldllegvlliergrweeAlr 66 
                 +++++ v   i+++ +a  +  ++  ++l d+ r   P ++e+ ++ + +l  +g++e A++
  CCD23468.1 472 ELDDSNVYPYIQLACVAYYNSTFKKCQELFDEARTKFPTLPEVPTFYAEILADKGELEAAMK 533
                 567777888899999999************************************99998875 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00082
  HrpB1_HrpK  23 asedtedaellLdalrvLrPevaeldllegvlliergrweeAlrlLrevea 73 
                 ++e+++ + +lL+    L P+ +++++  ++l ++ ++++ A+ l++e  +
  CCD23468.1 567 TQENFDTMTELLEKACELDPRSEQAKISLAQLKLQTEDIDTAIALFEETAD 617
                 788999999*************************************99764 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.56   4.8e+02      11      48 ..     201     240 ..     195     249 .. 0.77
   2 ?    0.5   0.0      0.36   3.1e+02      51     161 ..     448     484 ..     437     510 .. 0.52
   3 ?   10.6   1.6    0.0003      0.26      87     210 ..     519     638 ..     491     650 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.56
    TPR_MalT  11 aiasgdaeralelArqALallpe..ddllariaatavlGe 48 
                 ++a+++ ++++e +++AL+l p+  ++ll r+ a+ +lG 
  CCD23468.1 201 YFAMNQLDKVIESSNKALELKPDysKALLRRANAYEALGN 240
                 6778889999999999999998533678888888888885 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.36
    TPR_MalT  51 llqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGi 149
                                                                                              +++ll+   +++eAe++ +++ 
  CCD23468.1 448 Y---------------------------------------------------------------------------HRGQLLLVNQKFDEAETFFLKAK 471
                 3...........................................................................34555555555555555555555 PP

    TPR_MalT 150 elleql.epeaal 161
                 el ++   p ++l
  CCD23468.1 472 ELDDSNvYPYIQL 484
                 4444321222222 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.0003
    TPR_MalT  87 aeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladlly..EwndLeeAeqhlqeGielleqlepeaaldayvllarialaqGdleeAetl 183
                 aeil  +G+L++A++ y  a +l t  +  ++ ++ ++  + a l +   + ++++  + l++++el  +       +a + la+++l+ +d+++A +l
  CCD23468.1 519 AEILADKGELEAAMKQYDIAYRLETAYKYIHVGIAPLI-GKAAALARipTQENFDTMTELLEKACELDPRS-----EQAKISLAQLKLQTEDIDTAIAL 611
                 89999999999999999999999999999988887777.44466655445777999999999999886654.....689999***************** PP

    TPR_MalT 184 lekaeelaresnfhvdwlanaeevrvr 210
                 +e+   lar+ + ++++++ ae+++++
  CCD23468.1 612 FEETADLARTYQDKLQATTFAEAAKIQ 638
                 ****************99999999875 PP

>> NARP1  NMDA receptor-regulated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  13.3     0.005       4.3     403     490 ..      74     170 ..      55     174 .. 0.69
   2 ?    2.8   1.6     0.052        44     184     245 ..     184     244 ..     140     248 .. 0.60
   3 ?    2.9   0.2     0.048        41     189     269 ..     408     489 ..     393     492 .. 0.81
   4 ?   13.3   0.1   3.5e-05     0.029     184     263 ..     470     549 ..     452     582 .. 0.84
   5 ?   -0.5   1.3      0.53   4.5e+02      17      83 ..     588     656 ..     583     662 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.005
                 T.....-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--.......---.....----------S-.SSSTTTT-S-HHHHHHHHHTTTGGGTTT-TH CS
       NARP1 403 a.....elseaerkklrkkakkaekkaekeeaekaekekekkaaekkakk.....edeeakkededp.lgekLvkteepLeeAlkflkpLlklaaenie 490
                        +s++++kkl+kk+kk+++k +++++++++++++++a+++++ +     +    +++d+d    +kL++ +e L+  +kf k+L+++ ++ ++
  CCD23468.1  74 TsspppPISKSKKKKLKKKLKKNHQKTDENNNNNNNSQSTSSASSSNSASpilkpSYPLDSQNDPDFnEINKLIANNENLK--SKFAKELKNKGNQYFK 170
                 1345557999**************999999999888888866555444331110033344556666534589999999998..5999999999888765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.052
                 ----SSHHHHHHHHHHHHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHH CS
       NARP1 184 ekepesallwvlyflAqhydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkA 245
                 + +  +  ++  + ++  y  +++ +k +e  +ka+e +p      l++a+ ++  G+ k+A
  CCD23468.1 184 ALRLDQDPVFYSN-ISACYFAMNQLDKVIESSNKALELKPDYSKALLRRANAYEALGNNKEA 244
                 3333333233333.444455689999999999999999999999999999999999999998 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.048
                 SHHHHHHHHHHHHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCTTT-H..HHHHHHHHH CS
       NARP1 189 sallwvlyflAqhydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeearklDlaDR..yiNskcaky 269
                 ++++++ +++A   +  ++ +   +y dka   +p++   y+ ++++l     +++A +   +a++lD      yi   c+ y
  CCD23468.1 408 NSYIYMAMLVADKNNDKNDLD-YFKYFDKATTLNPNFAPTYYHRGQLLLVNQKFDEAETFFLKAKELDDSNVypYIQLACVAY 489
                 556777777777777766666.5899******************************************987522566666665 PP

  == domain 4  score: 13.3 bits;  conditional E-value: 3.5e-05
                 ----SSHHHHHHHHHHHHHHHHT-SHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCTTT-HHHH CS
       NARP1 184 ekepesallwvlyflAqhydklgsrekAleyidkaiehtptlvelyltKarilkhaGdlkkAaevmeearklDlaDRyiN 263
                 +ke   + ++ +  lA    +    +k  e+ d+a  + ptl e+ +  a+il  +G+l++A++  + a +l +a +yi 
  CCD23468.1 470 AKELDDSNVYPYIQLACVAYYNSTFKKCQELFDEARTKFPTLPEVPTFYAEILADKGELEAAMKQYDIAYRLETAYKYIH 549
                 5566666678888888777777788899**************************************************96 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.53
                 HTHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHTT-HHHHHHHHH..HHHHH-TT-CHHHHHHHHHT. CS
       NARP1  17 agkleeAlehLeekekqivDklavketkaelllkLgrkeeAeatye..aLlernpenskYyeglekakk 83 
                 +++++ +l++L+ + ++i   +a+ e  a+l    ++k +A++  e  ++ +r +en  Y  ++e+++ 
  CCD23468.1 588 SEQAKISLAQLKLQTEDIDTAIALFEETADLARTYQDKLQATTFAEaaKIQKRIKENPIYAAKIEETLA 656
                 677888999999999999999999999999998888888887655422688999999999999998874 PP

>> SARAF  SOCE-associated regulatory factor of calcium homoeostasis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.0   7.1e-05     0.061     162     244 ..      20     103 ..      11     124 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 7.1e-05
       SARAF 162 llfvvlvllviayivykaflaaeeereaeaeggrrgeggggggggggpgseeeq.ddpPppy.........sltksqkpssssessqqgeqee 244
                 l+++++ ++  a+ +y  + + ++ +++++  +++ +++ +++++ ++ +++ + + pPpp          +         + ++++q+++e+
  CCD23468.1  20 LIITTITAGTAAFGAYYYYNQLQKLQPSGSISKETAGSTEKNTKNHDTINNDLNtSSPPPPIskskkkklkK---------KLKKNHQKTDEN 103
                 568888899999999999987777633322222222222222222222223333488999994444443330.........322222221221 PP

>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       7.6   6.5e+03      19      29 ..     394     404 ..     392     406 .. 0.86
   2 ?   -0.9   0.1         2   1.7e+03      37      49 ..     495     507 ..     493     508 .. 0.89
   3 ?    9.1   0.1    0.0016       1.3      15      45 ..     598     628 ..     593     630 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 7.6
  Exonuc_VII_S  19 elsLeeslkly 29 
                   e++L ++++ly
    CCD23468.1 394 ETDLQKAIDLY 404
                   899******99 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
  Exonuc_VII_S  37 keCekkLdeaeqk 49 
                   k+C++  dea+ k
    CCD23468.1 495 KKCQELFDEARTK 507
                   89********987 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0016
  Exonuc_VII_S  15 LEsgelsLeeslklyeeGvkLlkeCekkLde 45 
                   L  +  +++ +++l+ee + L++  ++kL++
    CCD23468.1 598 LKLQTEDIDTAIALFEETADLARTYQDKLQA 628
                   55556689*********************97 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0     0.004       3.4       1      35 [.      11      45 ..      11      73 .. 0.90
   2 ?    0.2   0.1      0.62   5.3e+02     150     175 ..     162     187 ..     144     197 .. 0.79
   3 ?    2.0   0.0      0.17   1.5e+02     151     180 ..     449     478 ..     407     486 .. 0.64
   4 ?   -1.4   0.2       1.9   1.6e+03     155     172 ..     521     538 ..     517     548 .. 0.60
   5 ?    3.8   1.5     0.048        41      57     104 ..     570     617 ..     558     642 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.004
      TPR_21  1 KawWkengklilvgvvlalvglaGwqgwqdyqeeq 35
                K+++ ++ kli++ ++++ +++ ++ ++++ q+ q
  CCD23468.1 11 KNFFINHRKLIITTITAGTAAFGAYYYYNQLQKLQ 45
                899***************************99876 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.62
      TPR_21 150 elrGDilvaqgkldeAraaYqaAlaa 175
                   +G+ +++ +++++A + Y+ Al+ 
  CCD23468.1 162 KNKGNQYFKSKDNENAIKYYEYALRL 187
                 459999***************99975 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.17
      TPR_21 151 lrGDilvaqgkldeAraaYqaAlaaleeka 180
                  rG +l+ + k+deA + + +A +  +++ 
  CCD23468.1 449 HRGQLLLVNQKFDEAETFFLKAKELDDSNV 478
                 367777777777777777777766666655 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1.9
      TPR_21 155 ilvaqgkldeAraaYqaA 172
                 il+ +g+l+ A + Y+ A
  CCD23468.1 521 ILADKGELEAAMKQYDIA 538
                 455555555555555544 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.048
      TPR_21  57 kakeaaeeladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvle 104
                 ++++++e l+++ +  +  ++a++ lA+ + +++d+++A a +e+ ++
  CCD23468.1 570 NFDTMTELLEKACELDPRSEQAKISLAQLKLQTEDIDTAIALFEETAD 617
                 455555555555555666666777777777777777777766666554 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  14.6    0.0023       1.9       8     121 ..      51     170 ..      44     186 .. 0.35

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0023
       SR-25   8 srsreergeekkrkksskdssrsssasksqsrkassasekee....erskekkkkkrrrssssssssssssssssssssssssdd........rkkrgk 94 
                 s++    +e+  +++   ++  ++s+ + +  k ++ + k++    +++++++++++++s+s+ss sss s s     s   +++        +     
  CCD23468.1  51 SKETAGSTEKNTKNHDTINNDLNTSSPPPPISKSKKKKLKKKlkknHQKTDENNNNNNNSQSTSSASSSNSASPILKPSYPLDSQndpdfneiN----- 144
                 4444333333333333333434444433333322222222221001222222233333333333333333333322233333333334433221..... PP

       SR-25  95 kkdkkkkkkkkkkkkkkekkkakekak 121
                  k   ++++ k k  k +k k+++  k
  CCD23468.1 145 -KLIANNENLKSKFAKELKNKGNQYFK 170
                 .22222222222455555555553322 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.27   2.3e+02       8      42 ..     211     245 ..     205     251 .. 0.86
   2 ?    8.5   1.1    0.0029       2.5       9      57 ..     576     624 ..     568     637 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.27
      TPR_20   8 laeleaalaanpddldarldlAlallaagryeeAl 42 
                 +++  +al+ +pd  +a l  A+a+ a g+++eAl
  CCD23468.1 211 IESSNKALELKPDYSKALLRRANAYEALGNNKEAL 245
                 566678899999999*****************998 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0029
      TPR_20   9 aeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkwed 57 
                 + le+a++ +p   +a++ lA++ l+ ++ + A++++ e     r+++d
  CCD23468.1 576 ELLEKACELDPRSEQAKISLAQLKLQTEDIDTAIALFEETADLARTYQD 624
                 668999****************************998887777777766 PP

>> SpoIIIAH  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   8.7   0.00071       0.6       4     123 ..      20     145 ..      17     183 .. 0.39
   2 ?   -2.8   0.1       5.3   4.5e+03     123     149 ..     309     335 ..     308     337 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00071
                 XXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXX.................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    SpoIIIAH   4 iiitaLalmiavagYlnftedsgk.......kaaetaeteqeesekaeigd.................dkekdessaasaeaesssetesesseksdia 78 
                 +iit++    a+ g + + ++ +k       + +eta+++++++++ ++ +                 +   + +++ +++ +++ e+++++++++  +
  CCD23468.1  20 LIITTITAGTAAFGAYYYYNQLQKlqpsgsiS-KETAGSTEKNTKNHDTINndlntssppppiskskkK---KLKKKLKKNHQKTDENNNNNNNSQSTS 114
                 68888887776666444444433356777742.333333333333322222466666667665432211...111111111111111111111111111 PP

                 XXXXXXX.........................XXXXXXXXXXX--HHHHHHHHHHHHHHHHHHHHHH CS
    SpoIIIAH  79 ssdedeade......................ltsetasaaasasdyfaeakleReqkrsknketLqe 123
                 s ++    +                      +                                 ++
  CCD23468.1 115 SASSS---NsaspilkpsypldsqndpdfneI---------------------------------NK 145
                 11111...112233444444444444444441.................................33 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.3
                 HHHT-TTS-HHHHHHHHHHHHHHHHHH CS
    SpoIIIAH 123 eiinnenlseeekqeAqqqllelteke 149
                 ++i n n ++e+ +e +q l +l +k+
  CCD23468.1 309 TTITNYNPDDEADKELVQGLEALAKKT 335
                 5799999999*******9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2554  (0.142451); expected 358.6 (0.02)
Passed bias filter:                      848  (0.0472977); expected 358.6 (0.02)
Passed Vit filter:                       118  (0.00658152); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.86u 0.31s 00:00:01.17 Elapsed: 00:00:00.47
# Mc/sec: 4239.69
//
Query:       CCD23469.1  [L=445]
Description: hypothetical protein NDAI_0B04350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-92  309.6   1.9    4.2e-92  309.2   1.9    1.1  1  ORC6      Origin recognition complex subunit 6 (ORC6)
  ------ inclusion threshold ------
       0.38    9.4   1.2       0.49    9.0   1.2    1.2  1  Ndc1_Nup  Nucleoporin protein Ndc1-Nup
        4.3    5.5   7.5        6.1    5.0   7.5    1.2  1  CDC45     CDC45-like protein


Domain annotation for each model (and alignments):
>> ORC6  Origin recognition complex subunit 6 (ORC6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.2   1.9     7e-96   4.2e-92       2     356 ..      11     426 ..      10     427 .. 0.88

  Alignments for each domain:
  == domain 1  score: 309.2 bits;  conditional E-value: 7e-96
        ORC6   2 sdll.......pthsgglpkkllslassLynlSlskkvvlkneeEiARchiCaelAaekLkekl..dlpysvkkiPlppkaykklldlfrqsLsnss.. 89 
                 +d+l        +++ g  kkl+s++ +Ly+ S  +k+ lk++eE+AR+hiCa++AaekL+ek+  dl+ s++ iPl+pk++ +ll+ f++++++ss  
  CCD23469.1  11 RDILnltekgeQDWNHGDMKKLVSATGTLYASSV-NKIALKPDEETARYHICAFIAAEKLHEKYspDLKFSTNNIPLEPKKVRHLLQIFKNTIFQSSpv 108
                 6777777777789*********************.**************************************************************** PP

        ORC6  90 ...satstPskspsspst...........dpkslrkqlfsTPtKsktlktalsa.........sksssplkrrrklaneedgeeeeed.apswvstsir 164
                    s+t++P+k++  +             dpk+lrk+lf+ PtK++++k+ +s+             sp k+rrkla+eed+ ++e++  ++ ++ +  
  CCD23469.1 109 kniSWTPSPKKKRNDKNSpvkdngrftakDPKQLRKELFGAPTKVTPSKNVPSLsnsptksstNDDDSPTKVRRKLAFEEDSGDDENNaIQASDKDRVV 207
                 *********998776655678********************************9***9999888889******************88855544444444 PP

        ORC6 165 ................................dsrpeisrtlspskslgdesilfndss.....ddekkseqksprk..........llkkkkdkisde 216
                                                  +++     ++  + + d+++++ +++     +++ +       k          ll +k++k++++
  CCD23469.1 208 nainnkeyttddntdgeeegeeqynndegfetANED-----TPSRVDADDNDVEESPERlikrrKRSPN-------KktgrpyskmcLLSRKYYKVKPI 294
                 9999****9988888888888887775443322222.....2334455555555555554433434444.......34444566999************ PP

        ORC6 217 diielcnafelpaevlvkvletflarkrklvkksewqlacGlvakayfkvnhrelrqtagideglpkkmqyqkeglsredvdewiklveewikgeeWfr 315
                 ++ielcn+felp +v++ vle +  ++++lv+  +wql+cGlv++++f+v+++++rq+++id+ + ++ + +++  + +dv e+ik+v+e+i ge Wfr
  CCD23469.1 295 EVIELCNQFELPQDVAYNVLEQYMSYASYLVC--PWQLVCGLVMNCVFVVFNEKRRQDPRIDHRIIERICLLMKADNYDDVSECIKIVKELIIGERWFR 391
                 ********************************..***************************************************************** PP

        ORC6 316 eiekkydyfdgaeeeesqakeskareglGsMlqdrvdylSe 356
                 ++++k + f+g ++ee+++       +lGsM q++  ++S+
  CCD23469.1 392 DLQIKHNCFEGGSYEEVISV------KLGSMFQPNKSLVSD 426
                 ********************......*********999997 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.2   8.2e-05      0.49     362     449 ..     115     206 ..      93     334 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 8.2e-05
    Ndc1_Nup 362 ps.kapknkasapvkelprlsksplkkkddeifgnsltaeaspkssssskegvekalsslakspgqs.psptarls.......prarkllekaksrl 449
                 ps k+++n++++pvk++ r++++++k+ ++e+fg++     ++  +s+   +++++ ++ ++++ +s +++ ++l+       +++     ++k+r+
  CCD23469.1 115 PSpKKKRNDKNSPVKDNGRFTAKDPKQLRKELFGAP-----TKVTPSKNVPSLSNSPTKSSTNDDDSpTKVRRKLAfeedsgdDENNAIQASDKDRV 206
                 22467899999**********9999998999***32.....11112222333333333333333333222222222444444422222222233333 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.5     0.001       6.1     129     200 ..     192     274 ..     164     324 .. 0.49

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.001
       CDC45 129 eeesd....eede........eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee.sddddersrkrrrsepsakk 200
                 ++e++    ++++        +e   dd++++eee ee+ ++d  e  e++++++ s+ d++++  +++ er  krr+++p++k+
  CCD23469.1 192 DDENNaiqaSDKDrvvnainnKEYTTDDNTDGEEEGEEQYNND--EGFETANEDTPSRVDADDNdVEESPERLIKRRKRSPNKKT 274
                 2222222221111345554432222233322222222222222..2222222222233344433333333444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3210.88
//
Query:       CCD23470.1  [L=1105]
Description: hypothetical protein NDAI_0B04360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-48  164.9   2.1    1.8e-48  164.9   2.1    2.3  2  N-SET      COMPASS (Complex proteins associated with Set1p) c
    2.4e-20   71.9   0.5    6.3e-20   70.6   0.5    1.7  1  SET_assoc  Histone lysine methyltransferase SET associated
    2.5e-18   67.0   0.1    2.5e-18   67.0   0.1    3.0  3  SET        SET domain
  ------ inclusion threshold ------
       0.87    9.9  11.6       0.13   12.6   6.5    2.3  2  Troponin   Troponin


Domain annotation for each model (and alignments):
>> N-SET  COMPASS (Complex proteins associated with Set1p) component N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.5         1   4.6e+03     102     118 ..     596     612 ..     584     667 .. 0.50
   2 !  164.9   2.1     4e-52   1.8e-48       3     173 .]     773     957 ..     771     957 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1
       N-SET 102 vqkaletveaeakkdek 118
                  + a+e+ e ++k++ k
  CCD23470.1 596 KKAAIEEAERKKKEEVK 612
                 22222222222222222 PP

  == domain 2  score: 164.9 bits;  conditional E-value: 4e-52
       N-SET   3 lldldglqelikDeeDlkflkkllkeldek...eassdignlelwawkqkeikelnglegikekeekie....gyylenatGcarteGykkIpdkeKsk 94 
                  +d+ ++qe+ikD+eD+++l++ll+  ++k   e ++     e+ +wk +e++++   + ++e++ +++    +  l + +G++++eG++kIpd++K++
  CCD23470.1 773 SIDILDFQEVIKDTEDISILQELLDANETKpteEMKHAGCISEYAIWKYRENEKNL--RLTNEWHLNLNevpfDVELTKGKGSFKAEGFRKIPDNLKAC 869
                 68999*******************996544110444444599***********998..*******99999*9999************************ PP

       N-SET  95 YLphrrkvqkaletveaeakkdekaaaaaaae.........eaaekesskqeissSRenRannRRfvadieaqkaalgtesdlLslNq 173
                 YLphrrk++++l+tv+++ +++++ ++ + +           +a++++s qeissSR+nRa+nRRf+++ieaq+aa+g esdlLslNq
  CCD23470.1 870 YLPHRRKLNQPLNTVNQHGSDRPTGNKFTPEPsarreesndPDASESVSIQEISSSRDNRASNRRFQQNIEAQRAAIGAESDLLSLNQ 957
                 *********************9998887776678899998877888899999***********************************9 PP

>> SET_assoc  Histone lysine methyltransferase SET associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.5   1.4e-23   6.3e-20       1      62 [.     429     490 ..     429     492 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 1.4e-23
   SET_assoc   1 FiskksvpvhkvtvedlkkrLkkyeweriledktGyYivFndskeAerCfraedgtklftyr 62 
                 F++k ++  h++++ed+k++L++y+++r+l++ tG+YivFnd+ke+++C + e+g+ ++ +r
  CCD23470.1 429 FVPKTFLFFHGFRIEDFKYKLRRYRYSRVLNHATGIYIVFNDLKECQNCRNIESGKLTLLSR 490
                 9*******************************************************998665 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2   5.3e+03     122     132 ..     440     461 ..     302     491 .. 0.53
   2 ?   -1.8   1.0      0.78   3.5e+03      79      88 ..     605     614 ..     531     729 .. 0.61
   3 !   67.0   0.1   5.6e-22   2.5e-18       2     168 ..     975    1079 ..     974    1080 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                 C...........GTTGGGCEEX CS
                 x...........xxxxxxxxxx RF
         SET 122 a...........gplarflNHs 132
                             + + r lNH 
  CCD23470.1 440 FriedfkyklrrYRYSRVLNHA 461
                 1224444444445566777775 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.78
                 HHHTHHHHHH CS
                 xxxxxxxxxx RF
         SET  79 tdaalkassk 88 
                 ++++ +++ +
  CCD23470.1 605 RKKKEEVKTQ 614
                 1111111111 PP

  == domain 3  score: 67.0 bits;  conditional E-value: 5.6e-22
                  CEEEESSXBXTTXEEEEEE.ECCEECHHHHHHHHHH........HTEEEEEXGGXXGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET    2 rGvfAtedIpkgeficeyp.eeiiltkdeadksele........aylfslpeapknlaftkelakasastllqklakdqkqaekedtdaalkasska 89  
                  +G++A+e+I++ e+i+ey+ e   ++++ a+ +e           ylf ++                                              
  CCD23470.1  975 WGLYALEPIAAKEMIIEYVgE--SIRQAVAEMRERRylkngigsSYLFRVD---------------------------------------------- 1023
                  *******************77..7777777777777678888888888888.............................................. PP

                  XTTTSXXXHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET   90 esdlnaskpeagafsaiagysidaralksgngagplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168 
                                    +++id  a+k+g+ a    rf+NH Cdp c++ +  v + +r++++A+rdI+++eElt+dY
  CCD23470.1 1024 -----------------ENNVID--ATKKGGIA----RFINHCCDPSCTAKIIKVGGRRRIVIYALRDIAANEELTYDY 1079
                  .................7888**..77******....****************************************** PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       2.3     1e+04      77      92 ..     367     382 ..     361     394 .. 0.66
   2 ?   12.6   6.5   2.8e-05      0.13      57     109 ..     587     639 ..     583     656 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.3
                 XXXXXXXXXXXXXXXX CS
    Troponin  77 kdkeieelkkkvndlr 92 
                 kdk i+e  kkvn+l 
  CCD23470.1 367 KDKTIDENLKKVNALN 382
                 5666666666666654 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.8e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---THH CS
    Troponin  57 heridkleeekydieekvakkdkeieelkkkvndlrGkfkkpalKkvrktade 109
                  +++++ e++k+ iee ++kk++e +     +++l G + + +lKk r ++  
  CCD23470.1 587 EKKLRERESKKAAIEEAERKKKEEVKTQDFDIFKLYGGYSRSNLKKRRYSQVS 639
                 6789999**************************************99887644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 7675.75
//
Query:       CCD23471.1  [L=954]
Description: hypothetical protein NDAI_0B04370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.7e-66  221.4   0.0      2e-65  220.4   0.0    1.6  1  MutS_V        MutS domain V
    1.3e-32  113.6   2.1    4.9e-32  111.7   2.4    1.9  2  MutS_III      MutS domain III
    2.6e-25   88.8   0.0    1.1e-24   86.8   0.0    2.0  2  MutS_I        MutS domain I
    1.3e-08   35.3   0.2    6.4e-08   33.0   0.0    2.2  2  MutS_II       MutS domain II
  ------ inclusion threshold ------
      0.045   13.8   0.1        3.1    7.9   0.0    2.8  2  VEG           Biofilm formation stimulator VEG
      0.094   12.5   0.1        2.3    8.0   0.0    2.4  2  ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter 


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.4   0.0   6.7e-69     2e-65       1     183 [.     762     952 ..     762     954 .] 0.90

  Alignments for each domain:
  == domain 1  score: 220.4 bits;  conditional E-value: 6.7e-69
                 EEEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHHH CS
      MutS_V   1 llitGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlaia 99 
                 +++tGpnm+Gkst+lrq+a+iv+laqiG+fvp+++a+i++vdkif+Rvg++Ddl+++ stFmvEm+Et+ il+ ateksl ilDE+GRGts  +G++ia
  CCD23471.1 762 WVVTGPNMGGKSTFLRQNAIIVILAQIGCFVPCARAHIGLVDKIFSRVGSADDLYNEMSTFMVEMVETSFILRGATEKSLAILDEIGRGTSGKEGVSIA 860
                 69************************************************************************************************* PP

                 HHHHHHHHHTT--EEEEEES-.GGGGGHHHHSTT......EEEEEEEEE.EETTEEEEEEEEEES--SS--HHHHHHHTT--HHHHHHHHHH CS
      MutS_V 100 lavaeyllekikaktlfatHy.heltklaeklee......vknlhlavk.eeeedivflykvkegaaeksyGikvaklaglPesvverArev 183
                 +a a+yl+ ++ +++lfatH+ +el k+ +++++      v+ ++  +    + ++++ +k+++g+++ks  ikva+ ag+Pe+ +e+A + 
  CCD23471.1 861 YATAKYLIWNNSCRSLFATHFgTELKKIIDEQKDkaisdsVSFYRSGIIeLGKGEFIYDHKLRSGICQKSDAIKVARTAGFPEEALEEAIKL 952
                 *********************6699998766544233222444444443355699********************************99876 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   2.4   1.6e-35   4.9e-32       2     191 .]     368     708 ..     367     708 .. 0.90
   2 ?   -3.4   0.0       3.3   9.9e+03      45      67 ..     724     747 ..     724     754 .. 0.76

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 1.6e-35
                 HHHHTTSSS-TTS.SSSS-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHH.T..TT.HHHHHHHHTT---HHHHHHHHHTT---HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   2 TlrnLeilenlrggskegsLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVee.leneelreelrellrrlpDleRllsrislgkakardlka 99 
                 T ++Le+ ++ r++s++g+Ll+ ++rT T++G+RlL +wl+ P++ l+eI++R+++V++  +n++++ ++   l++ +Dl R+l+++s g+++a +l +
  CCD23471.1 368 TSTALELHSTVRNNSRKGTLLSSIRRTATPSGTRLLTQWLSGPSLALTEITNRQKLVSFfKDNPDISGNVLTMLKKTYDLTRILQKFSFGRGEALELIQ 466
                 7789***999999999******************************************96779999999************************99**** PP

                 HHHHHHHHHTTTTT---SSTHHHHH..................HHHHHHHHHHB-SS--SSGGGS--B-T............................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxxxxx............................. RF
    MutS_III 100 llealkaleelvallekeklaesee..................eslaelleeaideeplalekegedlra............................. 151
                 l+++l+ ++ + ++  ++ ++ + +                  e la+ le+ + ee+l + + +e+ +                              
  CCD23471.1 467 LAQSLQMCNGISDYILSNLSSLQLKktvrdllqglansllfdkEYLANVLEN-LNEEELINLQTQEEREGdpylnneastgtnssfplsvnvvkpsfsk 564
                 ******8888888886665544444777777777777777764335567776.5555555555555555578888************************ PP

                 ................................................................................................... CS
                 ................................................................................................... RF
    MutS_III 152 ................................................................................................... 151
                                                                                                                    
  CCD23471.1 565 klqnlhddykkllsektslektyndvfvslgarhvllkkkqnndfalhitgspsnlkkvneyinscskindstfvslqqsnqtrwvshkswtdlgykld 663
                 *************************************************************************************************** PP

                 .....HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 152 .....iealeqelfqelleeveealerlrrlaealaeLDvllSlA 191
                      i+++e+ +++ + +++ e+++ +r+++ +l  LDv+lS+A
  CCD23471.1 664 lgelkIKKEESFIMDTFKNRFIENSDIIRKVSYSLGYLDVMLSFA 708
                 ****99999999999******999********************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.3
                 BS-HHHHHHHHHHHHH.T..TT.H CS
                 xxxxxxxxxxxxxxxx.xxxxxxx RF
    MutS_III  45 ltdleeInaRldaVee.leneelr 67 
                 +t+le I  R+ +Vee l+ ++l+
  CCD23471.1 724 STKLEIIGGRHLMVEEgLSLNSLN 747
                 578999999******988655544 PP

>> MutS_I  MutS domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.0   3.7e-28   1.1e-24       2     112 ..      80     193 ..      79     194 .. 0.94
   2 ?   -1.8   0.0       1.2   3.5e+03      56      71 ..     936     951 ..     920     953 .. 0.74

  Alignments for each domain:
  == domain 1  score: 86.8 bits;  conditional E-value: 3.7e-28
                 HHHHHHHCCCHH-TTCEEEEEETTEEEEECHHHHHHHHHCSSSSTT.ESSSSC.EEEEEEEHHHHHHHHHHHHHT.T-EEEEEEE-S-HHHH...S.S- CS
      MutS_I   2 plmkqylelkkkykdavlffrvGdfYelfgeDAviaareleitltkrkkssekeipmagvPehalekylrkLvek.gykVavveqtetpaek...kgvv 96 
                 p ++ + +l +++kd v++ ++G+fYel++e+A+ +a  l+i+lt+++ s++k ip ag+P  +l ++l+ Lv+  gy+V++++q  +++++   + ++
  CCD23471.1  80 PTLRYVRKLMDEHKDNVVLTQIGSFYELYFEQATKYAPKLNISLTSKTLSQGK-IPFAGFPVPQLGRHLKVLVNDyGYSVTIADQFPKNEIAdneQYKF 177
                 788999***************************************99999998.********************99**********999999654349* PP

                 -EEEEEEEBTTC-TTS CS
      MutS_I  97 krevvrviTpGtltde 112
                  r+v+r++TpGt++d+
  CCD23471.1 178 VRRVTRIVTPGTFIDD 193
                 *************997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.2
                 EEEEEEEHHHHHHHHH CS
      MutS_I  56 ipmagvPehalekylr 71 
                  ++ag+Pe+ale+ ++
  CCD23471.1 936 ARTAGFPEEALEEAIK 951
                 68999**999998776 PP

>> MutS_II  MutS domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   2.1e-11   6.4e-08      14     124 ..     222     339 ..     213     349 .. 0.68
   2 ?   -1.3   0.1      0.83   2.5e+03      84     106 ..     561     583 ..     507     606 .. 0.68

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2.1e-11
                 E.EEEEEEETTTTEEEEEEEEE-HHHHHHHHHH-ESEEEEESS-SCCCH.....HHHHHCHCTTT-EEEEESCCCCSHCC...HHHHCHHHB--STTTT CS
     MutS_II  14 r.vGlafiDlstgefvvsefedfeeleaeLsrlsPkElllpedlsesta.....eeessklrelrsrvgvretvefesek...aserleedfsvedldg 103
                   +Gl+++D+stge++v+++    +l++ ++r++PkE+ll++dl   +        e+++l++ + + +  ++ ++ +e+     +  ++ ++ ++l+ 
  CCD23471.1 222 LkIGLSWCDISTGEIFVQQVL-LRDLVSSITRIKPKEILLNDDLIPFNIlsgqwYPELVELKKYFVKYQKLPAQHRTIETfsnLFTSGTTKLARKQLMI 319
                 559******************.9********************98887787777555555555555555554444333331112333333444444444 PP

                 TTTGGG-HHHHHHHHHHHHHC CS
     MutS_II 104 fglekekklalaAlgalisYl 124
                   l+++ ++++ Al  l+ Y+
  CCD23471.1 320 Q-LQTFTQKEIVALRNLLIYI 339
                 2.3566666666666666666 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.83
                 SHCCHHHHCHHHB--STTTTTTT CS
     MutS_II  84 esekaserleedfsvedldgfgl 106
                 + +k+ ++l++d+++ + +++ l
  CCD23471.1 561 SFSKKLQNLHDDYKKLLSEKTSL 583
                 45667888888888777555433 PP

>> VEG  Biofilm formation stimulator VEG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.049   1.5e+02      27      45 ..     574     592 ..     568     606 .. 0.90
   2 ?    7.9   0.0     0.001       3.1      20      66 ..     660     704 ..     648     710 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.049
         VEG  27 kkikekeGvleetYpslFv 45 
                 kk   ++  le+tY+ +Fv
  CCD23471.1 574 KKLLSEKTSLEKTYNDVFV 592
                 678889999*********8 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.001
         VEG  20 lkankGRkkikekeGvleetYpslFvveldeeennkervSys..YtDiL 66 
                 +k++ G  kik++e  + +t+++ F+ + d      ++vSys  Y D++
  CCD23471.1 660 YKLDLGELKIKKEESFIMDTFKNRFIENSDI----IRKVSYSlgYLDVM 704
                 7889999******************965444....58888887789987 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.072   2.2e+02      63      93 ..     345     375 ..     289     390 .. 0.81
   2 ?    8.0   0.0   0.00076       2.3      51     111 ..     510     568 ..     503     587 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.072
  ATPgrasp_Ter  63 dglvnvQvrededgpkLLEiNpRasGGlgys 93 
                   ++ +n+Qv +++ +  ++ i +R s +l++ 
    CCD23471.1 345 HFSTNLQVPQRQLTTSIMQIDSRTSTALELH 375
                   5679*********************999875 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00076
  ATPgrasp_Ter  51 elaerlaeefgldglvnvQvrededg.pkLLEiNpRasGGlgysalaGvnlpylalklllgl 111
                   e+ +++ e+++ + l+n+Q++e+++g p+L   N  as G++ s+   vn+++ ++ + l++
    CCD23471.1 510 EYLANVLENLNEEELINLQTQEEREGdPYL---NNEASTGTNSSFPLSVNVVKPSFSKKLQN 568
                   56678999999***************9998...99****************99998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 6646.57
//
Query:       CCD23472.1  [L=226]
Description: hypothetical protein NDAI_0B04380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-06   27.4   0.0    6.1e-06   26.3   0.0    1.6  1  FeS_assembly_P  Iron-sulfur cluster assembly protein


Domain annotation for each model (and alignments):
>> FeS_assembly_P  Iron-sulfur cluster assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.4e-10   6.1e-06       2      72 ..     102     182 ..     101     184 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.4e-10
                     HHHHHHHTT-B-TTTSSBCCCCT---E..EEE-T.......-EEEEEE--SSTT-TTHHHHHHHHHHHHC..STT--EEEE CS
  FeS_assembly_P   2 eavlaaLrtVtDPelgvdlvslglvre..idieg.......gkVsvditltypacslaeairadaeaalr.alpgvevveV 72 
                     +++++  +++ DPe++++l +l  v    i++ +        +V + it+t+ +csla++i   ++  l+ alp+++  ++
      CCD23472.1 102 QEIYDLTAHISDPEHPLSLGQLSIVNLpdIEVHDcgdpnkmVEVIIRITPTITHCSLATLIGLGIRVRLErALPPRFRITI 182
                     788888999************9999855599999999999999********************************887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1805.36
//
Query:       CCD23473.1  [L=348]
Description: hypothetical protein NDAI_0B04390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-17   62.4   0.1    5.2e-17   62.4   0.1    3.5  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
  ------ inclusion threshold ------
       0.12   11.3   0.2       0.17   10.8   0.2    1.1  1  Myco_haema       Mycoplasma haemagglutinin
        2.1    8.6   7.8        8.1    6.7   0.8    2.5  2  DUF4293          Domain of unknown function (DUF4293)


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.1   8.8e-21   5.2e-17       1      66 []       1      76 [.       1      76 [. 0.96
   2 ?   -8.1  10.5         3   1.8e+04      21      21 ..     226     226 ..      80     339 .. 0.63

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 8.8e-21
                     S-HHHHHHHHHHHHHHHHHGGGS-H.............HHHHHHHHHHHHHTTHHHHHHHHTT---H.HHHHHHHHHH CS
  CDP-OH_P_transf  1 nlPnaiTllrlllsvlailllltyyp...........lvlailllliasltDalDGklARrlnqvst.lGkllDslaD 66
                     ++Pn+iTll+l +++++ l++l+y+p           + +ai l+l++++ D++DG++ARr++q s  lG+l+D+ +D
       CCD23473.1  1 MAPNVITLLGLSFILMNSLTVLYYDPylneasprwvyFSYAIGLFLYQTF-DGCDGVHARRTGQ-SGpLGELFDHSID 76
                     69**********************99**********************99.*************.655*******988 PP

  == domain 2  score: -8.1 bits;  conditional E-value: 3
                      G CS
  CDP-OH_P_transf  21 l 21 
                      +
       CCD23473.1 226 F 226
                      0 PP

>> Myco_haema  Mycoplasma haemagglutinin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   2.8e-05      0.17     193     260 ..     154     222 ..     151     257 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.8e-05
  Myco_haema 193 kvtLsnLkfgeNtiefsvPtsnkVapmiGNmY.ltsseankdkiyddiFgNtsakennstsvtvdllkG 260
                  +tL nL+fg+N i++ v      +  iG ++ +++ ++n +k y++  +Nt   +n++     d lkG
  CCD23473.1 154 HITLMNLQFGNNMIDIEVLDLFLLSLCIGIIFnIAAARENIRKYYENEKTNTLVGNNTEPFTEYDALKG 222
                 589****************99999*****9986888899********99**999999999999999988 PP

>> DUF4293  Domain of unknown function (DUF4293)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   1.1    0.0043        26      84     139 ..     136     191 ..     134     197 .. 0.88
   2 ?    6.7   0.8    0.0014       8.1      83     148 ..     242     304 ..     213     307 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0043
     DUF4293  84 lclinllllvllyvllallllvnkanaaaeslgesslkiglilplialilnlLAir 139
                 lc++ ++l+++++   ++++++++ +  ++ ++ + l++ l+  +i +i+n+ A r
  CCD23473.1 136 LCICLSFLITGFFSSQFWHITLMNLQFGNNMIDIEVLDLFLLSLCIGIIFNIAAAR 191
                 799999999999999999999999999999999999***************99876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0014
     DUF4293  83 rlclinllllvllyvllal.lllvnkanaaaeslgesslkiglilplialilnlLAirgIkkDeklv 148
                 +++ + l++ +++ v++++  ++v + ++++ +     +++ +++p ++lil l+ +r    D   +
  CCD23473.1 242 EFVSFPLFISIGFSVAFVVgRIIVAHLTKQYFPY----INFPMFIPSVQLILYLITVRMLGYDPSKI 304
                 6778889999*******99888899999999888....9******************9988886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2502.90
//
Query:       CCD23474.1  [L=684]
Description: hypothetical protein NDAI_0B04400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.2e-64  216.6   0.2    1.1e-63  214.9   0.2    1.9  1  NDT80_PhoG  NDT80 / PhoG like DNA-binding  family


Domain annotation for each model (and alignments):
>> NDT80_PhoG  NDT80 / PhoG like DNA-binding  family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   0.2   6.1e-68   1.1e-63       1     185 [.     137     364 ..     137     365 .. 0.98

  Alignments for each domain:
  == domain 1  score: 214.9 bits;  conditional E-value: 6.1e-68
  NDT80_PhoG   1 ewvcyrRNyfqvvasfeleglslekfvkhsftilenelesgeklpikyfalkikatknseddseielvqhtakrdkgpqfaPeivalvpkelpkhqlir 99 
                 ewv+y+RNyf++v++f +++  l++f++ s+++  +++ ++e+l ++yfa+ ika  n++d++ei+lvqhtakrdkgpqf+P+i++l+p++lp+hq+ir
  CCD23474.1 137 EWVGYKRNYFTLVSAFGVADYGLKEFLNGSYLLHLQDSFNDERLDVEYFAMIIKA-RNDDDSNEIPLVQHTAKRDKGPQFSPKICPLIPSHLPQHQIIR 234
                 7*******************************9999*******************.77779************************************** PP

  NDT80_PhoG 100 easnvrnesklkkf..........................deikkvarfeRlqFksatannkrrkqqrffkLvvkllaive.................. 154
                 easnvrn+ k+kk+                          d+i+kvar+eR+qF+s+++++k ++q+++f+L+v ++a v+                  
  CCD23474.1 235 EASNVRNSVKMKKYdstfyfhrdreknqfsknsllfsypkDCIEKVARYERVQFSSSISVKKPSQQNKHFRLHVIFGA-VTclpfinqferpdsfdklt 332
                 *****************************************************************************8.888***************** PP

  NDT80_PhoG 155 .keeskgteikiaelespplIVRGrsPsnyes 185
                  + +++g +i+++e+ +pplI+RGrsPsny++
  CCD23474.1 333 mDDGRQGYFIQLQEMRTPPLIIRGRSPSNYTN 364
                 *99***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       841  (0.0469072); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 5196.64
//
Query:       CCD23475.1  [L=208]
Description: hypothetical protein NDAI_0B04410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-41  141.4   7.4    3.4e-41  141.1   7.4    1.1  1  DUF3605   Protein of unknown function (DUF3605)
  ------ inclusion threshold ------
       0.03   14.7   1.5       0.29   11.5   0.1    2.8  3  GH-E      HNH/ENDO VII superfamily nuclease with conserved GH
      0.096   12.4   0.1        7.4    6.3   0.0    2.6  2  DSRB      Dextransucrase DSRB


Domain annotation for each model (and alignments):
>> DUF3605  Protein of unknown function (DUF3605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   7.4   5.8e-45   3.4e-41       1     153 []      12     186 ..      12     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 5.8e-45
                 -HHHHHHHHHHT-GGG----HHHHHHHHHHHHHHT...TS-HHHHHHHHHT-.................STTS.TTSSGGGEEEEE-SS---B-TTEEE CS
     DUF3605   1 tWeevkeiieeneleklkRspsdlrrYlkfkkelkkkygsiveyilkerlkW.............eeleakeelpfadeedykillNdfPYgleedivH 86 
                 tW++v++++++nel +l+Rsp+++ +Y+k++++lk   g  v++++ ++l+W             ++  +k++ +f++++ y+++lNdfPY +e+++vH
  CCD23475.1  12 TWKQVNDYVSKNELYNLRRSPEQTLKYHKHRDSLK---GINVTEFILQKLHWnldelenlnsikfKTDDEKTKACFSNSSLYQVTLNDFPYFFEPNVVH 107
                 7*********************************9...7777888889****88777666543332244445558************************ PP

                 EEEEESS---TT-SS............HHHHHHHHHHHHHHHTHHH......HT-EEEE---TTT-SSTTSEEEEEEEE CS
     DUF3605  87 lvvWskteleedeetg...........dlteesrakieefvkktfveklee.edkvlwFkNwasLqSvkaveHiHvllr 153
                 l+vWsk++++ +++++           +++ ++++++e+f++  +++k+++ +d+++wF N+++LqS+++++H+Hvl+r
  CCD23475.1 108 LLVWSKIRIPMYKNDEtekheevdhipEVNGTMKNNVETFLEGILTDKYHIsKDNYCWFMNYTKLQSIRSISHLHVLIR 186
                 ************9986678999*9999**********************999*************************96 PP

>> GH-E  HNH/ENDO VII superfamily nuclease with conserved GHE residues
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   4.9e-05      0.29      33      59 ..       4      30 ..       2      34 .. 0.86
   2 ?    0.7   0.0      0.12   7.2e+02      36      57 ..      71      92 ..      59      95 .. 0.82
   3 ?   -1.3   0.0      0.49   2.9e+03      14      42 ..     124     154 ..     115     158 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.9e-05
        GH-E 33 kkaeeggitqkefldeynnpdnyrled 59
                +k++ + it+k+++d++++ + y l+ 
  CCD23475.1  4 DKSITHPITWKQVNDYVSKNELYNLRR 30
                577889*************99999875 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.12
        GH-E 36 eeggitqkefldeynnpdnyrl 57
                ++ + ++++ ++ ++n++ y++
  CCD23475.1 71 IKFKTDDEKTKACFSNSSLYQV 92
                55778899999*********98 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.49
        GH-E  14 rerdwdmGHkpgr..eyrrlvkkaeeggitq 42 
                 +e+  +++H p+   + +++v+  +eg +t+
  CCD23475.1 124 TEKHEEVDHIPEVngTMKNNVETFLEGILTD 154
                 5666678888877666677777766666666 PP

>> DSRB  Dextransucrase DSRB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.012        70      27      41 ..      84      98 ..      69     104 .. 0.87
   2 ?    6.3   0.0    0.0012       7.4      23      49 ..     143     169 ..     128     174 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.012
        DSRB 27 FseGvmYLvaLedYP 41
                Fs+  +Y v+L+d+P
  CCD23475.1 84 FSNSSLYQVTLNDFP 98
                899999********9 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0012
        DSRB  23 aveeFseGvm...YLvaLedYPeGiWFFne 49 
                  ve+F eG++   Y ++ ++Y    WF n 
  CCD23475.1 143 NVETFLEGILtdkYHISKDNY---CWFMNY 169
                 69*******877799**9999...599885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1763.80
//
Query:       CCD23476.1  [L=294]
Description: hypothetical protein NDAI_0B04420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   13.4   0.1      0.068   12.8   0.1    1.2  1  SusD_RagB  SusD family
       0.17   11.5   0.8       0.35   10.5   0.8    1.6  1  PIR        Yeast PIR protein repeat


Domain annotation for each model (and alignments):
>> SusD_RagB  SusD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   7.6e-06     0.068     193     262 ..     159     226 ..     152     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.6e-06
                 S----CGCSBT...HHHHHHHHHHHHHHHTTTTT-HHHHHHHTT-HHHHHSCCECEECSCSSCCEECCEE CS
   SusD_RagB 193 ipaltdaaykttvskdelikaildERrrElagEgnRwfDLrRWtktlkernklfnagnaadgatkkleef 262
                 i+++td + ++t  +   +ka+ldE ++E   E   ++D++ W++tl +  ++  +g ++d ++ + e++
  CCD23476.1 159 IAPVTDGTIIDT--QMFSLKAVLDEEKLEKREEKISFEDIVNWNNTLLTDRNKTSNGINNDKFQYRREDN 226
                 556677777776..9999*************************988877766666666666655555444 PP

>> PIR  Yeast PIR protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.8   3.9e-05      0.35       6      14 ..     245     253 ..     243     256 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.9e-05
         PIR   6 QIgDGQiQA 14 
                 QI DGQ+QA
  CCD23476.1 245 QICDGQVQA 253
                 999*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2187.65
//
Query:       CCD23477.1  [L=188]
Description: hypothetical protein NDAI_0B04430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1387.02
//
Query:       CCD23478.1  [L=238]
Description: hypothetical protein NDAI_0B04435 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-18   65.0   0.1    8.5e-18   64.1   0.1    1.5  1  CAP_GLY      CAP-Gly domain
    5.2e-06   26.8   0.0    1.1e-05   25.8   0.0    1.6  1  Ubiquitin_2  Ubiquitin-like domain


Domain annotation for each model (and alignments):
>> CAP_GLY  CAP-Gly domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.1   9.5e-22   8.5e-18       4      64 ..     151     218 ..     148     219 .. 0.85

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 9.5e-22
     CAP_GLY   4 rv..k..lkegrrGvvryvGpvp..fakgewvGveldepnGkndGsvkgkrYFe.ckpnrGvFvrpek 64 
                 r+  k   + +rrG  r++G++p  +++ +w+G+e+dep Gkn+Gs+ gk YF  +k+n+G F++p +
  CCD23478.1 151 RCsvKtpDQPERRGWLRFIGKIPdiNKEDIWCGIEFDEPLGKNNGSFSGKVYFGpTKDNYGGFIKPIH 218
                 543235556789***********8777889***********************9899*******9965 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.3e-09   1.1e-05       3      56 ..       3      51 ..       1      66 [. 0.81

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.3e-09
                 EEEEEETTSS.SEEEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSE CS
  Ubiquitin_2  3 kleitssltkavsserrfsksltieelKekLelitGtspasmrLqlyddkkdne 56
                 +++i s+l    s+ + f+ ++++++l +k+++itG++p+ m+L+l +    + 
   CCD23478.1  3 QIQINSELC---SAVKDFPTDIKLGDLCHKIYQITGIEPNEMKLHLNNG--IKD 51
                 566767776...7789******************************843..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1851.91
//
Query:       CCD23479.1  [L=121]
Description: hypothetical protein NDAI_0B04440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-18   64.2   0.1      9e-18   63.7   0.1    1.2  1  LSM       LSM domain
  ------ inclusion threshold ------
      0.085   13.0   0.3       0.56   10.4   0.0    2.1  2  DUF150_C  RimP C-terminal SH3 domain
       0.13   12.4   0.2       0.29   11.3   0.0    1.6  2  SM-ATX    Ataxin 2 SM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.1   1.5e-21     9e-18       2      65 ..      33     106 ..      32     108 .. 0.94

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.5e-21
                 HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET..........EEEEEEEEEEEGGGEEEE CS
         LSM   2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk..........ekrklglvliRGnnivli 65 
                 +l+k++++kv+v+l +g+ + G+Lkg+Dq mNlvL++++ +lk+++          ++r+lgl+++RG   v++
  CCD23479.1  33 DLSKYKDSKVRVKLMGGKIVTGILKGYDQLMNLVLDETIDYLKNPDdeigtaslknKSRSLGLTVVRGPLLVSL 106
                 699*****************************************************************766665 PP

>> DUF150_C  RimP C-terminal SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.13     8e+02      22      31 ..      16      25 ..      14      26 .. 0.85
   2 ?   10.4   0.0   9.4e-05      0.56       6      44 ..      33      68 ..      31      87 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.13
    DUF150_C 22 pvegrkkftG 31
                 +++rkkf+G
  CCD23479.1 16 QQQQRKKFEG 25
                5799****99 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9.4e-05
    DUF150_C  6 dFarflGelVkvklklpvegrkkftGkivevdeet.itle 44
                d +++ + +V+vkl     g+k +tG+++ +d+ + ++l+
  CCD23479.1 33 DLSKYKDSKVRVKLM----GGKIVTGILKGYDQLMnLVLD 68
                677889999****99....*************88755555 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.81   4.8e+03      57      57 ..      18      18 ..       4      35 .. 0.47
   2 ?   11.3   0.0   4.8e-05      0.29      15      51 ..      41      75 ..      40      95 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.81
                . CS
      SM-ATX 57 s 57
                +
  CCD23479.1 18 Q 18
                2 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.8e-05
                EEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS CS
      SM-ATX 15 evevtvknGevyeGifstvslekdfsvvLkmarkvkk 51
                +v+v++  G++ +Gi+++++    +++vL+ +    k
  CCD23479.1 41 KVRVKLMGGKIVTGILKGYDQ--LMNLVLDETIDYLK 75
                89*******************..89999987755555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 909.94
//
Query:       CCD23480.1  [L=216]
Description: hypothetical protein NDAI_0B04450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-75  253.4   0.0    1.6e-75  253.1   0.0    1.0  1  UPRTase        Uracil phosphoribosyltransferase
     0.0034   16.9   0.0      0.004   16.7   0.0    1.2  1  Pribosyltran   Phosphoribosyl transferase domain
  ------ inclusion threshold ------
       0.14   12.6   0.0        0.2   12.2   0.0    1.2  1  CoA_binding_2  CoA binding domain
       0.16   11.9   0.1       0.26   11.3   0.1    1.2  1  Flu_C_NS1      Influenza C non-structural protein (NS1)


Domain annotation for each model (and alignments):
>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.1   0.0   3.7e-79   1.6e-75       2     205 ..      13     214 ..      12     215 .. 0.99

  Alignments for each domain:
  == domain 1  score: 253.1 bits;  conditional E-value: 3.7e-79
     UPRTase   2 sshpllkakltilRdastsrkdfrelvdriarllaeealsallpveevtvttplgkeysgelldeekialVpilRaGegmeealrellpearvghlglq 100
                 +++++l ++ +i+Rd+st r+df +++dri+rll+ee l++ lpv+ ++v t +++   g+ ++  ki++V+i+RaGe+me++lr++++++r+g++++q
  CCD23480.1  13 PQTNQLLGLYSIIRDKSTARPDFIFYSDRIIRLLVEEGLNH-LPVTRKNVDTHTNEVFRGVAFKG-KICGVSIVRAGESMEQGLRDCCRSVRIGKILIQ 109
                 6899*************************************.*********************98.********************************* PP

     UPRTase 101 reeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefpkvkvvtaavDeeldekgyivpGlGD 199
                 r+eet+ p+++y+kLP++i++r+v+llDp++aTGgsa++a ++L++rgv+ e+I +l++++s+eg+++ +++fp+vk+vt+a+D++l+e++y+vpGlGD
  CCD23480.1 110 RDEETALPKLFYEKLPEDIEDRYVFLLDPMLATGGSAIMATDVLIKRGVKPERIYFLNLICSKEGIDKYHAAFPDVKIVTGALDRGLNEQKYLVPGLGD 208
                 *************************************************************************************************** PP

     UPRTase 200 fGDRlF 205
                 fGDR++
  CCD23480.1 209 FGDRYY 214
                 *****9 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.9e-07     0.004      79     118 ..     114     163 ..      59     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 8.9e-07
                   .........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BS..EE CS
  Pribosyltran  79 s........rlledpagkkVliVDDildtGgTllaalelLkekgpe..ev 118
                   +        +l+ed++++ V++ D +l+tGg+ + a++ L ++g++  ++
    CCD23480.1 114 TalpklfyeKLPEDIEDRYVFLLDPMLATGGSAIMATDVLIKRGVKpeRI 163
                   1445555556899*************************888888774354 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.5e-05       0.2      15      89 ..      38     112 ..      31     124 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
                    HHHHHHHHHHHHT--EEEESSS-SEETTEES----T....T--EEEE-S-HHHHGGGHHHH.HHH--SEEEE-TT- CS
  CoA_binding_2  15 fgykvlryllehglpvvpVnpkeeeilgekvyaslaedpepvdlvdvftppeatpeivkea.lalgakavwlqpgs 89 
                    ++ +++r l+e+gl+ +pV+ k    +  +v++ +a  ++++  v++++  e +++ ++++  ++++  + +q  +
     CCD23480.1  38 YSDRIIRLLVEEGLNHLPVTRKNVDTHTNEVFRGVA-FKGKICGVSIVRAGESMEQGLRDCcRSVRIGKILIQRDE 112
                    799********************999999*******.88**********************667799999999765 PP

>> Flu_C_NS1  Influenza C non-structural protein (NS1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   5.8e-05      0.26     108     140 ..      76     108 ..      68     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.8e-05
   Flu_C_NS1 108 kkicgyliakqvagietgirkcfrciksgfvma 140
                  kicg  i +    +e g+r c r ++ g ++ 
  CCD23480.1  76 GKICGVSIVRAGESMEQGLRDCCRSVRIGKILI 108
                 59*************************998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1560.88
//
Query:       CCD23481.1  [L=381]
Description: hypothetical protein NDAI_0B04460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-107  359.2   0.0   1.6e-106  356.3   0.0    1.8  1  Actin     Actin


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.3   0.0  9.2e-111  1.6e-106       4     397 ..       9     374 ..       7     378 .. 0.96

  Alignments for each domain:
  == domain 1  score: 356.3 bits;  conditional E-value: 9.2e-111
       Actin   4 vsavVlDnGssttraGyagedaPkavipslvgkprgrkvea.......klyvgdealtkrpelevrspvedGvvedwdaveelwehvlkeelkvdp.ee 94 
                 ++ +V+DnGs++++ G++  d+P     +l g p+++k +        + y+g+ a++ r+ l +++p+++Gvv +wd++e lw h++ + l+v++ ee
  CCD23481.1   9 NQPIVIDNGSCIIKSGFSRQDKPAGFEYNLTGMPKYDKIMItgqlenlDKYIGNRAQSIRGLLRLQHPMNRGVVDNWDDMELLWWHIFNDTLNVQNiEE 107
                 589**********************************98889******99********************************************95499 PP

       Actin  95 hpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssknve 193
                 hpll+te+pl+ +kqr+ ++E +fE+f++p+ly+a+  vls++asg +tg+vvD+G++  s +p+++G+vL  +ir++++gG+++te+l+  ++++   
  CCD23481.1 108 HPLLITEAPLTIEKQRHIMCERLFETFNIPSLYVANPSVLSLYASGNTTGCVVDCGDGYCSSTPIYEGFVLPASIRKMEVGGRDITEHLQFQIRKS--- 203
                 *********************************************************************************************996... PP

       Actin 194 vtprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpegdeekss...sspeksYeLPDgseiklgeeRfkvpEiLFdpsli 289
                                            + s+ +++e+e++++iKe+vc++sed++++ee+     +++ ++++LPDg+e++l++eRf+ pE+LF+p+l+
  CCD23481.1 204 --------------------------SGISLYSSNEKEIVRTIKEKVCYISEDFNKSEESYYlrqDEMSCKFKLPDGKELTLNKERFRSPEVLFNPQLM 276
                 ..........................4789*************************8444443555999******************************* PP

       Actin 290 gsesaleeekskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaqlaskgvkvkiiapeeerkysaWiGGSiLAslgtfqqlw 388
                 g e++          +s + +++i+++d +lrp+L++ni++tGG++l++g+ +Rl  +l++l+ +  k+ki ap+ erky +WiGGSiL  l+tf++lw
  CCD23481.1 277 GLENE---------NVSAMCFESISKVDLELRPKLFSNILLTGGSTLFKGFGSRLLGDLQELTNNRAKIKILAPP-ERKYTSWIGGSILTGLSTFKNLW 365
                 ***99.........8************************************************************.*********************** PP

       Actin 389 vskqEYeEq 397
                 v+k+++eE+
  CCD23481.1 366 VTKSDWEES 374
                 ********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2659.65
//
Query:       CCD23482.1  [L=34]
Description: hypothetical protein NDAI_0B04470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-26   89.7   0.4    7.4e-26   89.6   0.4    1.0  1  MFA1_2    Mating hormone A-factor 1&2


Domain annotation for each model (and alignments):
>> MFA1_2  Mating hormone A-factor 1&2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.4   4.1e-30   7.4e-26       1      34 []       1      34 []       1      34 [] 0.99

  Alignments for each domain:
  == domain 1  score: 89.6 bits;  conditional E-value: 4.1e-30
      MFA1_2  1 MQpstqAtqkdnssEkKDNyIvkGlfWdpaCVIa 34
                MQpstqAt+kdnssEkKDNyIvkGlfWdpaCVIa
  CCD23482.1  1 MQPSTQATKKDNSSEKKDNYIVKGLFWDPACVIA 34
                *********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       267  (0.0148921); expected 358.6 (0.02)
Passed bias filter:                      184  (0.0102627); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 272.41
//
Query:       CCD23483.1  [L=792]
Description: hypothetical protein NDAI_0B04480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.024   15.2   1.2      0.024   15.2   1.2    3.3  3  PH        PH domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       0.2   3.5e+03      40      67 ..      42      71 ..      21     122 .. 0.71
   2 ?   15.2   1.2   1.3e-06     0.024      36     103 ..     293     358 ..     215     360 .. 0.72
   3 ?   -3.1   0.2      0.61   1.1e+04      42      67 ..     497     522 ..     479     556 .. 0.49

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.2
                TESSEEEEEESTTEEEEEEEC..TTSSSST CS
          PH 40 kdkepkgsislsncevvevva..tedpkrk 67
                + k+p+ s s+s++e+++ ++  +e+++r+
  CCD23483.1 42 RLKSPTSSSSISEIESESQQDqdQEEEERE 71
                556677777777777776655543344443 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.3e-06
                 T....TCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHHHHH CS
          PH  36 d....ksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWikaiqsa 103
                 +    k  ++ ++ +s+ l+ ++       +   +k cf+lr+   ++++++l+ +s  +++ +W  +++  
  CCD23483.1 293 KrdklKYLSSNTLYKSYTLQFATFG----IPVDYKKKCFVLRLR--CETQQFLINFSHVDDMIDWTVHLNTG 358
                 1345555566666666666666666....5689999*****999..7789***************9999865 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 0.61
                 SSEEEEEESTTEEEEEEEC...TTSSSST CS
          PH  42 kepkgsislsncevvevva...tedpkrk 67 
                 ++ +++++ls ++ +e+v+   t   ++ 
  CCD23483.1 497 SKIRTTLPLSCVREEEIVQeytT---NTT 522
                 45555566666666555543331...222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1990  (0.110993); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.43
# Mc/sec: 5535.40
//
Query:       CCD23484.1  [L=447]
Description: hypothetical protein NDAI_0B04490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-71  241.3   0.2    2.9e-71  240.6   0.2    1.3  1  Peptidase_M14  Zinc carboxypeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M14  Zinc carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.6   0.2   1.6e-75   2.9e-71       2     288 ..     144     433 ..     143     434 .. 0.92

  Alignments for each domain:
  == domain 1  score: 240.6 bits;  conditional E-value: 1.6e-75
                    HHHHHHHHHHSTTTEEEEEEEE-TTS-EEEEEEE-SSTTSTTST-CEEEEEE-SSTT-HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHEEEEEES- CS
  Peptidase_M14   2 eayldalaarypdlvrlvsiGkSvegRplkvlkisssateaeegkpvvlidggiHarEwigsalllylleqLlsaYgedeeikellddtdiyilpv 97 
                    + +ld ++++ p+lv++ +iG+++e+ plkv++iss++ + +++++++li+ggiHarEwi+ ++ l +++qLl++Yg  ++ ++ +d+++++i+p 
     CCD23484.1 144 YLWLDLMKSTFPNLVTIENIGTTFENEPLKVVHISSNNSSMNPKNKTILITGGIHAREWISISTTLFTIYQLLTKYGASKRETKYIDSLNFLIIPI 239
                    569********************************************************************************************* PP

                    STHHHHHHHHHT-TTTTST-SBCTTSSSBS--GGGSSSSSTTSSSSBSSTTSTTBHHSSTT.SHHHHHHHHHHHH.....TTEEEEEEEEESSSEE CS
  Peptidase_M14  98 lNPDGyeysstedrlwrknrsnakessceGvDlnRnFpdlwnsegastspcsetyrgpapfsepetravlefiqk.....knivlfidlhsysqvi 188
                    +NPDGy+y++t+drlwrknr+++  s c+G+Dl++ F ++w+++   + pcse+y+g++p ++ e+++   fi++       i +f+dlhsysq i
     CCD23484.1 240 FNPDGYKYTWTNDRLWRKNRQETYMSNCQGIDLDHSFGYKWDNN--FEFPCSEEYSGQYPMEALEVKHWDTFINDittrgVHIYGFLDLHSYSQDI 333
                    *****************************************655..699************************999999999************** PP

                    EESHSSSS---SS-TTHHHHHHHHHHHHHHHCHTTTTEEE-EEEEEHHH.....H.T---SS-HHHHHHHHTT-SEEEEEEESSSSSSTTS--GGG CS
  Peptidase_M14 189 lypygstrdeispppddeelkslarkyaealqkmvrgteylsegitnga.....l.iyeasggmddwayertgvkfeytlelrdegkqgflppasq 278
                    +ypy++++d  + p+d+e+l +l+   ++a+++  +g++y ++  ++++     l ++  sg++ d++y+++   ++++l+lrd+g++gfl+p+++
     CCD23484.1 334 IYPYAYSCD--ELPRDYENLLELSYGLSKAIRN-KSGKNY-KVV-AACKdrgsdLnPKLGSGTALDYMYHNKAY-WAFQLKLRDTGNHGFLLPPKY 423
                    ********9..********************99.555666.333.3333233333466677********88888.********************* PP

                    HHHHHHHHHH CS
  Peptidase_M14 279 iepeaeenwe 288
                    i+p+a+e+++
     CCD23484.1 424 ILPVAKETYA 433
                    ******9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3383.32
//
Query:       CCD23485.1  [L=150]
Description: hypothetical protein NDAI_0B04500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-32  109.5   0.1    1.1e-31  108.8   0.1    1.4  1  Endosulfine  cAMP-regulated phosphoprotein/endosulfine conser


Domain annotation for each model (and alignments):
>> Endosulfine  cAMP-regulated phosphoprotein/endosulfine conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.1     6e-36   1.1e-31       1      79 [.      37     119 ..      37     120 .. 0.96

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 6e-36
  Endosulfine   1 dlsklspeelklyklyGkLPtkkdllskklqeRkYFDSgDYAlskagvaksq....kaktglgskhPspertpeikqrssasa 79 
                  dl++l+p+elkl+k+yGkLP+kkdll++k+qeRkYFDSgDYAl++agv+k++    +++++l+++ Ps  r+++i++r s+s+
   CCD23485.1  37 DLTNLTPQELKLFKMYGKLPSKKDLLKHKMQERKYFDSGDYALRQAGVIKNNdvisNSNNNLPVTDPSRLRESIIRRRLSNSS 119
                  6789*********************************************99999*9**********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1207.10
//
Query:       CCD23486.1  [L=327]
Description: hypothetical protein NDAI_0B04510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-17   62.1   4.9    1.8e-16   60.5   4.9    1.8  1  INSIG     Insulin-induced protein (INSIG)


Domain annotation for each model (and alignments):
>> INSIG  Insulin-induced protein (INSIG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   4.9   9.8e-21   1.8e-16       4     152 ..     142     292 ..     139     324 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 9.8e-21
       INSIG   4 llLfvlGvvygvlvtrlheerkl..............lvkke...ksssswrylvfwGlagvalGlllpwlDrlweekfaeeeeeeeeekeeekaasea 85 
                  +Lf++G+++g l + l +++ l              l        + s+++  + +G+ g++lG +l++ D+++           + +ke++  ++++
  CCD23486.1 142 SVLFICGLLFGELSKFLFDNHDLqkgglsivfknlvqL---LdkiITVSKVTEYIGFGIQGIILGVILKISDNIF-----------RPSKEKTGINRKN 226
                 69*******************9999***9988776532...1446666677777889****************88...........456778889999* PP

       INSIG  86 dwalvvrsigafvGiafAirklpwastlqvsltlalvnpfLWyliDrskpGfllsaavgllgtavll 152
                 ++ +++r ++a+ Gi +++r+lpw+s+ q s+ ++l+n+++W  +D s  +fl+s +v  l +a+++
  CCD23486.1 227 SFRSIIRLVNAMLGISLGVRRLPWTSSNQGSILWLLLNVIVWLFFDGSL-SFLMSGIVQTLFIAFFY 292
                 **********************************************997.57777777666666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1300  (0.0725082); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2340.19
//
Query:       CCD23487.1  [L=284]
Description: hypothetical protein NDAI_0B04520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-62  209.1   0.2    8.4e-62  208.6   0.2    1.2  1  WLM       WLM domain


Domain annotation for each model (and alignments):
>> WLM  WLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.6   0.2   4.7e-66   8.4e-62       1     190 [.       9     205 ..       9     206 .. 0.93

  Alignments for each domain:
  == domain 1  score: 208.6 bits;  conditional E-value: 4.7e-66
         WLM   1 ekiseikvlkkkpekeaalellkriakdvqpimkkhkfkVglLtElaPkeanlLGlNvnkGekieLrLRtdkddkeflpyesimgtllHELaHnvygpH 99 
                 ++i +i+vl++kp+ e al++lk+i k+v+++mk++kfkV +L+E++Pk+++lLG+Nvn+G+ki+LrLR+++d+ +fl  esi+gt+lHEL+Hn++gpH
  CCD23487.1   9 PHITKIAVLQRKPNAEYALSILKDITKQVSYLMKENKFKVSQLVEFYPKDKRLLGMNVNRGQKIMLRLRDSNDEFQFLARESILGTMLHELTHNLFGPH 107
                 5899*********************************************************************************************** PP

         WLM 100 dakFyallkeLekeveelkakGlkegflkeGkrlggkevrnksa......eeeeekealekagiagkgarlGgrse.ektrskasareliaaAaerRl 190
                 d+kFy++l+ L+++++ ++++Gl ++fl++G+rlgg++  n+ +      + + +   + +++  gkg++lG+ +  +k ++ +++re++a AaerR+
  CCD23487.1 108 DKKFYEKLDDLSARQWIIEQQGLFDTFLGSGNRLGGSTLGNNRNnnltagRIRGNVVGRPIRNRFGKGRKLGSLEGpNKLQKYKTPREMAAIAAERRY 205
                 *************************************999887777775444444445556788899*****998868889****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2033.58
//
Query:       CCD23488.1  [L=540]
Description: hypothetical protein NDAI_0B04530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-26   91.5   0.0    1.1e-25   90.5   0.0    1.4  1  Pkinase         Protein kinase domain
    2.5e-12   46.7   0.0    4.5e-12   45.8   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
    5.9e-09   35.2   0.0    5.9e-09   35.2   0.0    2.3  2  Pkinase_fungal  Fungal protein kinase
     0.0033   16.8   0.0     0.0062   15.9   0.0    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.13   12.2   0.5        1.5    8.6   0.1    2.6  3  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0     3e-29   1.1e-25       1     209 [.      50     267 ..      50     291 .. 0.87

  Alignments for each domain:
  == domain 1  score: 90.5 bits;  conditional E-value: 3e-29
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.HHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle.rkgslse 97 
                 y+  +k+GeGsfG+++++++  +g  v +K   ++ +  +    +  E +  k l   pni   y++ +e  + +lv +++    l+dl    ++ +s 
  CCD23488.1  50 YKIGKKIGEGSFGVIFEGINMINGTPVGIKFEPRKTEAPQ----LKDEYRTYKLLAgTPNIPLAYYFGQEGLHNILVIDLLGPS-LEDLFDwCNRRFSV 143
                 78899*************************9888877775....559*********9***********************9854.55555544468*** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.....EEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHHTTSCBSHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekge.....lKitDFGlakelesssk........ltsfvgtseYlAPEvlkeneyskkvDvWsl 183
                 +++ +ia q+++ +e lH++ +i+rD+Kp+N+Li + g+     + ++DFG+ak+++  ++        ++s  gt +Y++     ++e s+  D+ +l
  CCD23488.1 144 KTVVQIAVQMITLIEDLHAHDLIYRDIKPDNFLIGRPGQpdensIHLIDFGMAKQYRDPKTkqhipyreKKSLSGTARYMSINTHLGREQSRRDDMEAL 242
                 ***********************************877777778*************999999******************999999999********* PP

                 HHHHHHHHHSS-STTTSSHHHHHHHH CS
     Pkinase 184 Gvilyelltgkppfsgekgkekveke 209
                 G +++ +l g+ p++g k  + ++++
  CCD23488.1 243 GHVFFYFLRGQLPWQGLKAPN-NKQK 267
                 ***************765443.2222 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   1.2e-15   4.5e-12       2     224 ..      51     277 ..      50     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 1.2e-15
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  ++gkk+GeG+fG ++eg        + + V +K   +++++    +l +e+++ k l   pni   + +  ++ + ++v++++   +L++      ++
   CCD23488.1  51 KIGKKIGEGSFGVIFEGINM----INGTPVGIKFEPRKTEAP---QLKDEYRTYKLLaGTPNIPLAYYFGQEGLHNILVIDLLG-PSLEDLFDWC-NR 139
                  6899*************999....8899*****997777766...666777777777678999999999999999999999984.5899999888.99 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.....TTEEEE-STTTHEETTTSSEE.....EETTSSTSGGGGS-HHHHHHSEEEHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.....nkvvkisDfGLardiekddey.....vkkeeaklpvkWmapEslkekkftsks 186
                  ++++k+++++a+q+   +e L++++l+ rd+   N L+ +     ++ + + DfG+a++  + ++      ++k++     ++m++ +   ++ + + 
   CCD23488.1 140 RFSVKTVVQIAVQMITLIEDLHAHDLIYRDIKPDNFLIGRpgqpdENSIHLIDFGMAKQYRDPKTKqhipyREKKSLSGTARYMSINTHLGREQSRRD 237
                  9**************************************98888899***********994333222345488999999******************* PP

                  HHHHHHHHHHHHHTTSSGTTTTS...HHHHHHHHHHTTEES CS
  Pkinase_Tyr 187 DvWsfGvllwEiftlgespypgl...kneevleklkegkrl 224
                  D+ + G + +  +  g+ p++gl   +n++ +ek+ e+kr 
   CCD23488.1 238 DMEALGHVFFYFLR-GQLPWQGLkapNNKQKYEKIGEKKRT 277
                  ******99998776.*****999433455566666555554 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.6e-12   5.9e-09     304     406 ..     142     248 ..      11     250 .. 0.78
   2 ?   -4.2   9.3       1.5   5.5e+03     219     290 ..     423     519 ..     364     527 .. 0.54

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 1.6e-12
  Pkinase_fungal 304 spkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses.....garertGTleFmaievlkgeeHsy 393
                     s+k +++   + I+  + L+    ++ rDi  +N li  + + +e++  LiD+ +ak++ d+++++     +++   GT+ +m+i+   g e s 
      CCD23488.1 142 SVKTVVQIAVQMITLIEDLH-AHDLIYRDIKPDNFLIGRPGQPDENSIHLIDFGMAKQYRDPKTKQhipyrEKKSLSGTARYMSINTHLGREQSR 235
                     5667777788899999****.99***************99********************998888666665599******************** PP

  Pkinase_fungal 394 rhDLESffyvllw 406
                     r+D+E +  v+++
      CCD23488.1 236 RDDMEALGHVFFY 248
                     *****98888876 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.5
  Pkinase_fungal 219 aeiRkgldvtkaekfrskrkvvsssssqe..............................lsskaevklkksesskkvekrsvdssvstskrsrle 283
                     +++ k+ d t++e+ +++  v+++ s+q+                               ++++ v+  + +s+++   +s ++s+++++    +
      CCD23488.1 423 HNLSKRADPTSYESYQRQ--VQQKYSQQQpqqqmkkenfnnnnnntaptsvnxxxxxxxNRQQHGVSVSPDQSQQPIAPNSRQQSQQQQQ---QQ 512
                     444444444444332222..2222222222233445555555555555555556555544444444444555545544433333332222...34 PP

  Pkinase_fungal 284 nrvhrrl 290
                     +rvh+  
      CCD23488.1 513 QRVHNQN 519
                     5666554 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.7e-06    0.0062     102     171 ..     130     198 ..     107     242 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-06
         Kdo 102 aqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee.eeeaeiwliDldkarl 171
                  +dL d++++  +++++   ++  +  +li++lh+ ++  +d+ + n+l+   +  +e  i liD+  a++
  CCD23488.1 130 LEDLFDWCNR--RFSVKTVVQIAVQMITLIEDLHAHDLIYRDIKPDNFLIGRPGqPDENSIHLIDFGMAKQ 198
                 5799999996..7777777778888889**********************988868999*******87765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.088   3.2e+02      29      75 ..      82     123 ..      73     164 .. 0.66
   2 ?    8.6   0.1   0.00043       1.5     165     196 ..     162     196 ..     129     198 .. 0.82
   3 ?   -3.3   0.0       1.9     7e+03     121     141 ..     374     392 ..     318     405 .. 0.58

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.088
                 -TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE CS
         APH  29 pparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalie 75 
                 p + +a+++ +e++ ++lLa++ + +P ++++++ + ++ l    + 
  CCD23488.1  82 PRKTEAPQLKDEYRTYKLLAGT-PNIPLAYYFGQEGLHNIL----VI 123
                 4456899***************.669999997655555543....33 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00043
                 -EEEE-SS-SGGGEEEC......TTEEEEE---TT- CS
         APH 165 ptvllHgDlhpgNllvd....pddgrvtGviDfeda 196
                 ++ l+ +D++p+N+l+     pd++ +  +iDf++a
  CCD23488.1 162 AHDLIYRDIKPDNFLIGrpgqPDENSI-HLIDFGMA 196
                 56689****************777777.7*****99 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.9
                 HTCCHHHHHHCHHHCCCGCCT CS
         APH 121 qdlellrqlesatarllasel 141
                   +++l ql ++  ++ + +l
  CCD23488.1 374 MVPNPLHQLSQQ--QQQQDNL 392
                 223344444444..3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2118  (0.118133); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.48
# Mc/sec: 3374.67
//
Query:       CCD23489.1  [L=268]
Description: hypothetical protein NDAI_0B04540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.28   10.2   1.3       0.39    9.8   0.8    1.4  1  Tuberin   Tuberin


Domain annotation for each model (and alignments):
>> Tuberin  Tuberin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.8   2.2e-05      0.39      63     132 ..     178     245 ..     159     251 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 2.2e-05
     Tuberin  63 fdflLklradssyrlglpdkedkvvrfspyllvdskeeealekksqlelseestseaestqtpsskvttl 132
                 f++l  +r  +s++l++p+++ ++  f+py   ++++e ++++ +++++s+++   ++++++p +++++l
  CCD23489.1 178 FHILNPARFHQSVSLAYPNEDPNNSVFTPYNNYQHEKEMKSNHYTTTTTSKHNF--TNQEENPITELNKL 245
                 7788889**************77778*******999777776444444444333..33334566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1236  (0.0689386); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1971.75
//
Query:       CCD23490.1  [L=565]
Description: hypothetical protein NDAI_0B04550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-13   49.5   0.0    9.3e-13   48.1   0.0    1.7  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
       0.11   11.7   0.0       0.17   11.1   0.0    1.2  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0     1e-16   9.3e-13      25     354 ..     123     540 ..     109     549 .. 0.76

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 1e-16
                    HHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC...TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEESS-THHHHHHHHTTSEE CS
  Aminotran_1_2  25 kaekegalaggtlneygpidglpeleealakflg...rseklklkreaavvvgsGagaliealifllklnpgdeilvpdptyasyknilrlsggev 117
                    k+ ++  l  ++  +y+ ++g + l   +  f+    + +  +++    + + +G++     ++  l ++ ++ +l+ + t+ +++ ++ + g+++
     CCD23490.1 123 KRFPQ-ELPLSMSLQYSETQGMKPLLDFIKTFITklnNTPPYNETLY-DIMLANGSSDSMFKVFETL-CDESTTVLMEEFTFVPVISNVMATGAKC 215
                    55555.55556666677777766555555555554446666666666.7888888887777777777.68************************** PP

                    EEEEBEET.TTTEE-HHHHHHHHTTHHCTTE.....TEEEEEEESS.-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHH... CS
  Aminotran_1_2 118 vryplyse.edfhldlealeealkeapegnk.....ktkvilvesp.hNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavat... 203
                    ++ +l+   ed ++d+e le++l++   ++      k+k++++ s  +NP G+ ++ e+ +k++++a+++ l+++ D+ Y  + f +    +    
     CCD23490.1 216 IPLKLNLNyEDQGIDIEYLENLLDNWGGKSNtkhlsKPKILYTISTgQNPIGVTLSMEKRRKIYTIAQRHDLIILEDDPYCYLTFPKYN--QKnnn 309
                    ****99888***************9766666999**999999766538*************************************9542..22457 PP

                    ............................HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEH......HHHHHHHHHHHHHTSSHHHHHHHHHHHH CS
  Aminotran_1_2 204 ............................ranveeepnllivgslsKafGlaGeRvGyilgna......avvsqlrklsrpflsssllqaavaaals 265
                                                + +++++  ++ + ++sK fG +G+R+ +i++n+       v s l + + ++ s+s +   + a+++
     CCD23490.1 310 ndkqdqlnpyfdpnftiedylrerfyksLITLDTDGRVIRLETFSKIFG-PGLRLSFIVANKflidkfVVFSELSSRAPSGVSQSFVYSTIQAMTK 404
                    89*****************999999999999999999************.9***********9999998888888888888888888888888877 PP

                    HHHHHHH...................HHHHHHHHHHHHHHHHHHHHHHS......TEEEECCSCSSEEEEEETHH..............CHHHHHH CS
  Aminotran_1_2 266 dallkqs...................eleemrqrlqkrrkelrdeLael......glkvlasqsgmflltdlsae..............takelsk 322
                    +   ++                    ++ + + ++ +rr +  + L +        ++++++ +gmf   +l                 +++++ k
     CCD23490.1 405 KRISEIVwgnfdqvemfnemykswmdWIMKIAGHYTHRRNTTLKTLYATeafkngLFSIIEPSAGMFINLGLQFPkfqeyyedsfniidQMNKFDK 500
                    777655566666666666666666666666666666666666666655566766666777777777777666655677777777777777777777 PP

                    HHHHTCTEEEEEGGGGTS........TTEEEEEC.TTS-HH CS
  Aminotran_1_2 323 kLleevgvyvtpgtsftv........pgrlRitv.Agltee 354
                    +L+++ gv v+ g  + v         +++R+t+  + +++
     CCD23490.1 501 VLTKN-GVKVVLGYKMAVskefskenCNFIRLTIsFAKNDN 540
                    77777.77777766666666666655556666664445555 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.9e-05      0.17     103     165 ..     223     290 ..     196     293 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 1.9e-05
                      EBTTTBE-HHHHHHHS--S-T.....TS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEE CS
  Beta_elim_lyase 103 nkeaGkmdlekleaaikevga.....heekiklisltvTnntagGqvvsleelrevaaiakkygiplh 165
                      n e+  +d+e le+++++ g      h  k+k++++  T +   G  +s+e+ r+++ ia+++++ ++
       CCD23490.1 223 NYEDQGIDIEYLENLLDNWGGksntkHLSKPKILYTISTGQNPIGVTLSMEKRRKIYTIAQRHDLIIL 290
                      3344779**********988788899***************9*********************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3985.02
//
Query:       CCD23491.1  [L=68]
Description: hypothetical protein NDAI_0B04560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      0.003   17.5   0.2     0.0033   17.3   0.2    1.1  1  Kin17_mid     Domain of Kin17 curved DNA-binding protein
  ------ inclusion threshold ------
       0.07   13.8   0.1       0.15   12.7   0.1    1.7  1  Inhibitor_I9  Peptidase inhibitor I9


Domain annotation for each model (and alignments):
>> Kin17_mid  Domain of Kin17 curved DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   3.7e-07    0.0033       8      58 ..      16      66 ..      10      68 .] 0.90

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.7e-07
   Kin17_mid  8 entkkvieeyskeFekdFlklLrtrhgekkveankvYqeyiqdkdHvhmNa 58
                +n  k i+ +s eF +++l++L+++ ++ +++++  Y+  +++ + vh N+
  CCD23491.1 16 TNRYKLIKGFSMEFDDSYLNILKNQIERLNMNMDGRYHINLEEDQIVHANT 66
                567899****************************99999999999999986 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.7e-05      0.15      36      67 ..      10      40 ..       2      65 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
                  .--EEEEEEESSSSSEEEEEE-GGGHHHHHTS CS
  Inhibitor_I9 36 sakagilysYkilfnGfavklteeqaeklrkr 67
                  +   +i + Yk l++Gf+++++++ +  l+++
    CCD23491.1 10 ELGGKITNRYK-LIKGFSMEFDDSYLNILKNQ 40
                  556789999*9.9*********9988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 495.45
//
Query:       CCD23492.1  [L=464]
Description: hypothetical protein NDAI_0B04570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-25   89.0   3.2    2.1e-13   49.9   0.0    3.4  3  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
     0.0058   16.7   0.4       0.22   11.6   0.0    3.0  3  RRM_3        RNA binding motif
  ------ inclusion threshold ------
      0.012   15.7   0.0      0.028   14.5   0.0    1.6  1  Limkain-b1   Limkain b1
      0.017   15.1   0.0       0.16   12.0   0.1    2.4  2  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   4.6e-17   2.1e-13       1      69 [.      53     122 ..      53     123 .. 0.96
   2 !   29.8   0.4   8.9e-11     4e-07       9      69 ..     154     209 ..     148     210 .. 0.93
   3 !    8.3   0.0   0.00043       1.9       2      67 ..     253     319 ..     252     322 .. 0.90

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 4.6e-17
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lf+g+L+p vt+e L+ +F+k+ ++ s+k+++d +t+ s g+++ +F s++d ++A++ +n + l ++++
  CCD23492.1  53 LFIGDLHPKVTQEILENIFGKYPSFLSAKVCYDfKTKVSLGHGYLNFSSERDSKQAIDDFNCTRLFDSVI 122
                 8************************************************************998888777 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 8.9e-11
                 TSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   9 dvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 + t +  +elF+++G+i s+k   +     k+++f+ F+s+  A++ + ++n+k l g+++
  CCD23492.1 154 SFTPRRFYELFRECGEIISCKFEEN-----KNIGFISFQSENVAREVIINYNNKFLFGKQI 209
                 6788899***************996.....****************************998 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00043
                 EEESETTTSSHHHHHHHHHT.TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTE CS
       RRM_1   2 fVgnLppdvteeeLkelFsk.fGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggr 67 
                 ++ nL++ +++e L ++  +   ++++i+++    gk +  a V+ +sk dA+k ++++ng+ l g+
  CCD23492.1 253 VLQNLSFICSKEFLVQFCCQrHIQFEDIQIIGAYMGKVNHRAHVRCNSKLDAKKLVNEMNGRLLAGS 319
                 678999999999999999888999999999999999**************************99886 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.56   2.5e+03      39      56 ..      94     111 ..      53     117 .. 0.75
   2 !   11.6   0.0     5e-05      0.22      13      89 ..     155     229 ..     147     238 .. 0.84
   3 ?    1.4   0.0     0.074   3.3e+02      37      57 ..     291     311 ..     273     326 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.56
                 EEEEEESSHHHHHHHHHH CS
       RRM_3  39 egevrFkedeeakkalek 56 
                  g++ F ++ ++k+a++ 
  CCD23492.1  94 HGYLNFSSERDSKQAIDD 111
                 688999999999999875 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5e-05
                 --HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHHHHHC-B-CCTSSEEEEE--HHHHHHHHHHHHHH CS
       RRM_3  13 lsredikellsklgevayvdyekgdkegevrFkedeeakkalekateaklkikdaevtlelLeGeeEkeywkkiled 89 
                  + +++ el+++ ge+    +e++++ g + F++++ a++++ ++ ++   +  +++t +lL+ e+ +    +i+  
  CCD23492.1 155 FTPRRFYELFRECGEIISCKFEENKNIGFISFQSENVAREVIINYNNK--FLFGKQITCKLLSAENDESHSFNINTI 229
                 55677889***********************************99998..7889999*****999988766666554 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.074
                 SSEEEEEESSHHHHHHHHHHH CS
       RRM_3  37 dkegevrFkedeeakkaleka 57 
                 ++ ++vr +++ +akk+++++
  CCD23492.1 291 NHRAHVRCNSKLDAKKLVNEM 311
                 6789************99876 PP

>> Limkain-b1  Limkain b1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   6.3e-06     0.028       5      76 ..     140     214 ..     136     224 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.3e-06
  Limkain-b1   5 lvvsnLPtnrdklkkaiknrLrrLsdncGGkvlsisgks...avlrfanqeaaeralkrleneDvfGnritvsek 76 
                 l+ snLP   d  ++    r+  L+  cG  +   +++      ++f+++++a+  +   +n   fG++it +  
  CCD23492.1 140 LFFSNLPEVDDTGQSFTPRRFYELFRECGEIISCKFEENkniGFISFQSENVAREVIINYNNKFLFGKQITCKLL 214
                 799**************************999877765411257899************************8865 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.34   1.5e+03      40      52 ..      96     108 ..      93     109 .. 0.91
   2 ?   12.0   0.1   3.6e-05      0.16      18      47 ..     161     190 ..     156     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.34
  Nup35_RRM_2  40 yvkfesekdaekA 52 
                  y+ f se+d ++A
   CCD23492.1  96 YLNFSSERDSKQA 108
                  9*********999 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.6e-05
  Nup35_RRM_2  18 lehFasfGeIvkhyvpkevsvmyvkfesek 47 
                  +e F+++GeI    ++ ++++ ++ f se 
   CCD23492.1 161 YELFRECGEIISCKFEENKNIGFISFQSEN 190
                  5569***********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3465.95
//
Query:       CCD23493.1  [L=424]
Description: hypothetical protein NDAI_0B04580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-41  140.0   0.1    5.8e-41  139.2   0.1    1.4  1  Ysc84     Las17-binding protein actin regulator
    1.1e-17   63.3   0.0    2.2e-17   62.4   0.0    1.5  1  SH3_1     SH3 domain
      3e-14   52.6   0.0    5.4e-14   51.8   0.0    1.5  1  SH3_9     Variant SH3 domain
    1.1e-12   47.5   0.0    1.9e-12   46.6   0.0    1.5  1  SH3_2     Variant SH3 domain


Domain annotation for each model (and alignments):
>> Ysc84  Las17-binding protein actin regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.2   0.1   1.3e-44   5.8e-41       2     126 ..      77     200 ..      76     202 .. 0.98

  Alignments for each domain:
  == domain 1  score: 139.2 bits;  conditional E-value: 1.3e-44
       Ysc84   2 gvgaGfqiGvdiydcvlvlntkealeaftkktrvslGgdlsvaaGpvgaggeaeaaaaaklkapvysysksrGlyaGvsldgtviterkdaNaafYgek 100
                 g+gaG ++G++ +d+v++ln++ea+++f++ + +++Gg++sv+aGp+g+++ea+a+a++++ a+v++ysks+GlyaGvs++g+ i+er++aN++fYg++
  CCD23493.1  77 GAGAGGMVGIELTDFVFILNSPEAVRSFSEFGTITFGGNVSVSAGPMGRNAEAAASASTGGVAAVFAYSKSKGLYAGVSVEGSAIVERREANRKFYGDS 175
                 79***********************************************************************************************87 PP

       Ysc84 101 gvsveqILrgevpwpaaakeLlevlk 126
                  ++ + IL+g+v++p+a+++L+++l+
  CCD23493.1 176 -CTSKMILSGRVRPPPAVDPLFRILE 200
                 .**********************997 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0     5e-21   2.2e-17       1      48 []     371     418 ..     371     418 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 5e-21
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSS..SEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksed..gWwkgrlkgtgkeGliPs 48 
                 +AlY +++ee+d+L+f+kGDvi++l+kse+  +Ww+gr++  g+eG++P+
  CCD23493.1 371 VALYSFAGEETDDLPFRKGDVITILKKSESqnDWWTGRVN--GREGIFPA 418
                 7***************************************..69*****6 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   1.2e-17   5.4e-14       1      49 []     372     422 ..     372     422 .. 0.94

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 1.2e-17
       SH3_9   1 AlypyepreddeLsLqrGDvitvi..eesedgWlegsltGrtGlvPanyve 49 
                 Aly ++  e+d L++++GDvit++  +es+++W+ g+ +Gr G +Panyve
  CCD23493.1 372 ALYSFAGEETDDLPFRKGDVITILkkSESQNDWWTGRVNGREGIFPANYVE 422
                 8***********************555578********************7 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   4.3e-16   1.9e-12       2      56 ..     370     423 ..     369     424 .] 0.92

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 4.3e-16
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGEEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslvee 56 
                 ++a+ ++ ge ++ L f+kGdvi +l  +s+++++ww g+v+Gr G+fP ++ve 
  CCD23493.1 370 AVALYSFAGEETDDLPFRKGDVITIL-KKSESQNDWWTGRVNGREGIFPANYVEL 423
                 578889999*****************.8888999*******************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3245.00
//
Query:       CCD23494.1  [L=343]
Description: hypothetical protein NDAI_0B04590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-10   40.9   1.6    6.7e-10   39.5   1.6    1.6  1  PHP       PHP domain


Domain annotation for each model (and alignments):
>> PHP  PHP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   1.6   3.7e-14   6.7e-10       2     167 .]       4     244 ..       3     244 .. 0.71

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 3.7e-14
                 EEE-.-CCC--.S-H..HHHHHHHHHCT-SEEEEEEEEBTT............................HHHHHHHHHHH.HTTTTSEEEEEEE..... CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
         PHP   2 lHvH.teyslldgalsieelvkkakelglkaiaiTDhgnlf............................gyvefykaakk.kykagikpiiGleayvad 70 
                 +H+H ++y +  g+  +e +v+ +++  ++++++T+h+++                             +++++++++k+ +  ++ k i+G+e+   d
  CCD23494.1   4 HHSHsGDYVAH-GVDCLELMVDHVIKADFHTYCLTEHMPRLeykflypeekfnpendevslkvlqakfkNFLRHAQEIKNrHIPDRTKFIVGMEVEACD 101
                 8***8899977.66667*************************************************9999999999998754459*********88888 PP

                 ..................................................................E....EHHHH..................HHHHH CS
                 xxx.....................................................xxxxxxxxxxxxxxxxxxxx..................xxxxx RF
         PHP  71 dse.....................................................kerpshltllaknqeGyknl..................lklls 98 
                  s+                                                     + ++               l                  +kll+
  CCD23494.1 102 ISHieyaktlmlehksvlkfcvgsvhhingiaidfdqenwnralsvagnnlkrlliDYFN---------------LqylllvnlkplivghfdlFKLLI 185
                 888888888888888888888777777777777776433333333333333333332222...............133333331222333333333333 PP

                 HHHH..........HHHHHHS...................TTGG....HHHHHHHHHHHHHHHC.T-EEEEEGC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx RF
         PHP  99 kaylegfyrkpridkellekhsegLivlsgclkGevfe.aldli....eveekaeealeelakifgdyiEints 167
                  + l        id+e+         vl g  +G v    + ++     v+e++ ++l++++++ g ++Eints
  CCD23494.1 186 PRNL-------IIDEETGT-------VLKGPTDGGVHAyGFPYVtkwgTVRELIVRNLKYIKSY-GGAVEINTS 244
                 3333.......33333332.......3577777777665554449999***************8.*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2432.26
//
Query:       CCD23495.1  [L=261]
Description: hypothetical protein NDAI_0B04600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-21   73.9   0.0    1.3e-20   73.1   0.0    1.4  1  Acetyltransf_13  ESCO1/2 acetyl-transferase
    7.2e-11   41.7   0.2    1.3e-10   40.9   0.2    1.5  1  zf-C2H2_3        zinc-finger of acetyl-transferase ESCO
  ------ inclusion threshold ------
       0.05   13.8   0.0      0.082   13.1   0.0    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
       0.15   11.7   0.0        0.3   10.8   0.0    1.4  1  DUF1281_C        Ferredoxin-like domain in Api92-like protein
       0.18   12.3   0.0       0.41   11.1   0.0    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_13  ESCO1/2 acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   3.7e-24   1.3e-20       3      62 ..     188     247 ..     186     250 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 3.7e-24
  Acetyltransf_13   3 alcGisriWvssshRrkgiAtkLldaarenfiyglelekeevAFsqPTesGkklarkyfg 62 
                       ++GisriWv+++ R +giA+ Lld+are++iyg e++k   A+sqPTesG kla+ky g
       CCD23495.1 188 FTLGISRIWVCRTQRANGIASMLLDVAREHTIYGKEVNKFLTAWSQPTESGGKLASKYNG 247
                      579*******************************************************86 PP

>> zf-C2H2_3  zinc-finger of acetyl-transferase ESCO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.2   3.7e-14   1.3e-10       1      39 [.      19      54 ..      19      55 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 3.7e-14
   zf-C2H2_3  1 QlvLdlgqksfgasqCkeCgMvYnpgspeDeklHkkfHa 39
                Q+vL++  k     +C++C+M+Y+++s  D+++H+k+H+
  CCD23495.1 19 QSVLRIESKV---IKCPKCEMTYASTSLNDVSMHDKYHN 54
                999***8776...88***********************8 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.3e-05     0.082      23      88 ..     134     217 ..     114     235 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.3e-05
                     H.HHHHHHSTTCEEEEEEETTEEEEEEEEEEEET.................TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHH CS
  Acetyltransf_1  23 e.feesfsleaegllvaeedgeliGfisllkipd.................ekggvayieslaVspeyrgkGlGsaLlealeer 88 
                     e  ++  ++  ++ +v+ +d++ ++ +++ +  +                   + +  i +++V ++ r +G++s+Ll+ + e+
      CCD23495.1 134 EnDFWTDEKGQGRAFVYVKDNKAVAVVTMEILKPgrgrwmvyetksivdgmRPNFTLGISRIWVCRTQRANGIASMLLDVAREH 217
                     324444555566999999*********999998855555544444455554334445555******************987665 PP

>> DUF1281_C  Ferredoxin-like domain in Api92-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.3e-05       0.3      14      38 ..     223     248 ..     213     251 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.3e-05
   DUF1281_C  14 ltlsFdtaWspPeeiiaaLskky.dv 38 
                 +  +F taWs P e   +L+ ky +v
  CCD23495.1 223 EVNKFLTAWSQPTESGGKLASKYnGV 248
                 5568*******************665 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.41      24      49 ..     176     215 ..     143     236 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                     S.............TCTEEEEE-GGGTTSSHHHHHHHH.T CS
  Acetyltransf_7  24 d.............aeitrlaVdpeyrgkGiGraLlea.a 49 
                     +               i r++V    r +Gi++ Ll++ +
      CCD23495.1 176 EtksivdgmrpnftLGISRIWVCRTQRANGIASMLLDVaR 215
                     1335555555555667778******************622 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2095.56
//
Query:       CCD23496.1  [L=512]
Description: hypothetical protein NDAI_0B04610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-46  157.8   0.1    5.1e-46  156.6   0.0    1.6  2  DSPn             Dual specificity protein phosphatase, N-term
    6.2e-25   87.6   0.0    4.1e-23   81.7   0.0    2.3  2  DSPc             Dual specificity phosphatase, catalytic doma
    0.00052   19.6   0.0    0.00096   18.8   0.0    1.4  1  Y_phosphatase    Protein-tyrosine phosphatase
     0.0006   19.5   0.7      0.001   18.7   0.2    1.6  2  CDKN3            Cyclin-dependent kinase inhibitor 3 (CDKN3)
  ------ inclusion threshold ------
      0.035   14.2   0.0      0.056   13.6   0.0    1.3  1  PTPlike_phytase  Inositol hexakisphosphate


Domain annotation for each model (and alignments):
>> DSPn  Dual specificity protein phosphatase, N-terminal half
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0   1.4e-49   5.1e-46       1     141 []      12     151 ..      12     151 .. 0.98
   2 ?   -3.6   0.0       3.8   1.3e+04      85     103 ..     292     310 ..     288     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: 156.6 bits;  conditional E-value: 1.4e-49
        DSPn   1 eiikdrLyfatlkkkpketenvhyfsiddelvYenFyaDFGPlnlaqlyrfcvkvnkkLkskelskkkivhytsadekkranaafLigaYavivlklsp 99 
                 e++k+r+y+ +++ +p++t+++++f+i+d+l Y++F+ DFGP+n+++lyrf+v ++++L+++ +skk++v+y+s+ +++ran+a+L+++Y+++v++++p
  CCD23496.1  12 EFLKGRVYLGAYDYTPENTDEIVFFTIEDTLYYNSFHLDFGPMNIGHLYRFAVILHEILNDPINSKKSVVFYSSTFTRERANSACLLCCYMILVQGWTP 110
                 799**********88************************************************************************************ PP

        DSPn 100 eealkplasqekppllpFrDaslgectyeltlldclkglekA 141
                 +++l+pla+  +pp++pFrDa+++++++e+t++d+++g+++A
  CCD23496.1 111 HQVLQPLAQV-DPPFMPFRDAGYSNADFEITIQDIVYGVWRA 151
                 *********5.9****************************98 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.8
        DSPn  85 fLigaYavivlklspeeal 103
                 +Liga+++   +++++e +
  CCD23496.1 292 CLIGAHLIYTYGFTANECI 310
                 8999999999999988765 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.018        63      87     115 ..      94     122 ..      91     128 .. 0.82
   2 !   81.7   0.0   1.1e-26   4.1e-23      11     131 ..     209     333 ..     204     335 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHTSCHHHHHHHHHHHST CS
        DSPc  87 SatliiaYlmktknlslneayeflkerrp 115
                 Sa+l ++Y++  ++++  + ++ l +  p
  CCD23496.1  94 SACLLCCYMILVQGWTPHQVLQPLAQVDP 122
                 9*************998888877766655 PP

  == domain 2  score: 81.7 bits;  conditional E-value: 1.1e-26
                 HHHHHHHTCSEEEEESSSSSEC.ECCTTTTSEEEEEC.CESSTTSCCGGGHHHHHHHHHHH...HHTT-EEEEEESSSSSHHHHHHHHHHHHHHTSCHH CS
        DSPc  11 lallsklgitlvinvtkevpna.nalkkseieklrip.vedehetkiskyleeavefidka...kqkgkkvlVHCqaGisRSatliiaYlmktknlsln 104
                  +++s l++   +nv+  v+ + ++++k ++e + i+ ++   e+ ++++l+ + +f+ +a    +kg+k++VHC+aG+ R+++li a+l++t+++++n
  CCD23496.1 209 RPFKSVLNFFKDNNVQLVVRLNsHLYNKRHFETIGIQhLDMIFEDGTCPDLSIVQNFVGAAetiIKKGGKIAVHCKAGLGRTGCLIGAHLIYTYGFTAN 307
                 5678889999999999999988999************5555*****************98877799********************************* PP

                 HHHHHHHHHSTT-SSTHHHHHHHHHHH CS
        DSPc 105 eayeflkerrpaispnagfirqLleye 131
                 e++ fl+  rp ++    ++++L+  +
  CCD23496.1 308 ECIGFLRFIRPGMVVG-PQQHWLYLNQ 333
                 *************999.8889998766 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.7e-07   0.00096     168     195 ..     274     301 ..     219     330 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.7e-07
                    TTSS-EEEECSSSSHHHHHHHHHHHHHH CS
  Y_phosphatase 168 aksgpvvVhCsaGvgRtgtfvaldillq 195
                    +k g + VhC+aG gRtg+++ +++++ 
     CCD23496.1 274 KKGGKIAVHCKAGLGRTGCLIGAHLIYT 301
                    45699****************9987764 PP

>> CDKN3  Cyclin-dependent kinase inhibitor 3 (CDKN3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.5   5.2e+03     130     156 ..      73      99 ..      60     112 .. 0.70
   2 !   18.7   0.2   2.9e-07     0.001      99     156 ..     242     300 ..     228     308 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.5
                 HHTT--EEEE-SSSSSHHHHHHHHHHH CS
       CDKN3 130 lknyrktlihcygglgrsclvaaclll 156
                   n +k+++     + r    +acll 
  CCD23496.1  73 PINSKKSVVFYSSTFTRERANSACLLC 99 
                 457778888777888888888888874 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 2.9e-07
                 TT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHH.HHHHHHHHH CS
       CDKN3  99 ygivthhhpiadggtpdiascleimeelatclknyrktlihcygglgrs.clvaaclll 156
                 +gi        dg  pd++ + + +    t +k+  k  +hc  glgr+ cl+ a l+ 
  CCD23496.1 242 IGIQHLDMIFEDGTCPDLSIVQNFVGAAETIIKKGGKIAVHCKAGLGRTgCLIGAHLIY 300
                 455444455689999*********************************65898877654 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.5e-05     0.056      79     146 ..     223     291 ..     149     299 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
                      .........EE-HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS.-TT-EEEEE-SSSSHHHH CS
  PTPlike_phytase  79 vweevetpeevyerelaeelslrYaRipitdekapeeedfdalvsilkea.pektalvfnCqmGrgRTT 146
                      v+  v+ ++++y++  +e+ +++   + ++d ++p+ + ++ +v + ++  ++   + ++C++G gRT 
       CCD23496.1 223 VQLVVRLNSHLYNKRHFETIGIQHLDMIFEDGTCPDLSIVQNFVGAAETIiKKGGKIAVHCKAGLGRTG 291
                      33334478899***************************************999**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3941.81
//
Query:       CCD23497.1  [L=721]
Description: hypothetical protein NDAI_0B04620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1049  (0.0585086); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 5586.71
//
Query:       CCD23498.1  [L=139]
Description: hypothetical protein NDAI_0B04630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-23   83.5   3.7    1.7e-23   83.2   3.7    1.1  1  COMPASS-Shg1  COMPASS (Complex proteins associated with Set1p


Domain annotation for each model (and alignments):
>> COMPASS-Shg1  COMPASS (Complex proteins associated with Set1p) component shg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   3.7   9.6e-28   1.7e-23       2     101 ..      14     130 ..      13     131 .. 0.94

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 9.6e-28
  COMPASS-Shg1   2 LveefKkkGeFDklRkeiledfkeseae..............qnlrkkveeivesevkkdpsllfknrgkaaaliegeidrsdvykkle.....egv 79 
                    +e fKk+G+FD+l++eil+++++s+ +              q++++kv + v+++v+kdp+l+fknrg+++alie+++++ d ykkl+       +
    CCD23498.1  14 FAEAFKKQGYFDQLKREILSKNWKSNNDdddgtntttsvtveQTIKNKVADSVKDMVDKDPNLIFKNRGTTSALIEAQLFK-DDYKKLSegdnkILL 109
                   5899*****************************************************************************.889*99999987778 PP

  COMPASS-Shg1  80 drivdqdlqeepklreiikeei 101
                     +++q+l+ +++l++ i +++
    CCD23498.1 110 TDFIQQTLN-DQELTDGIISKL 130
                   999*****9.999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1114.41
//
Query:       CCD23499.1  [L=737]
Description: hypothetical protein NDAI_0B04640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-42  143.6   0.8      9e-41  139.2   0.0    2.7  3  RhoGAP        RhoGAP domain
    4.1e-05   23.8   7.6      0.001   19.3   7.6    3.1  1  FCH           Fes/CIP4, and EFC/F-BAR homology domain
  ------ inclusion threshold ------
        1.9    8.3  12.2       0.06   13.2   3.7    2.6  2  Sec34         Sec34-like family


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.4     0.036   2.1e+02      60      93 ..      84     133 ..      45     197 .. 0.60
   2 ?   -3.2   0.0       1.1   6.5e+03      23      53 ..     478     509 ..     478     516 .. 0.74
   3 !  139.2   0.0   1.5e-44     9e-41       1     149 [.     557     711 ..     557     715 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.036
                 HHHHHHHSSSTTTTGGHHHHHHH...HHTSSSHHHH.............H CS
      RhoGAP  60 LKrfLrelpepLltkelyeelie...aaksedeeer.............l 93 
                 +   L+ l+++Llt e + ++i+   + ++e+ +e               
  CCD23499.1  84 INALLSRLKQSLLTCEEFTKFIRkkyIFEEEHTQELskqykhffttasqS 133
                 55568889999999999999995344333333333333444444444440 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
                 TS-S-HHHHHHHHHHHHHTGGGCT.TTTTSCH CS
      RhoGAP  23 Rvsgskarvkelreafdkgkavds.dleeedv 53 
                 Rv  ++++v++  + +d g+++++  +++++v
  CCD23499.1 478 RVASNQSSVDQRFQSLDPGNQTARlPSMSTTV 509
                 88999999999999999999887664444444 PP

  == domain 3  score: 139.2 bits;  conditional E-value: 1.5e-44
                 BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCT......TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHHH CS
      RhoGAP   1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavds......dleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeerl 93 
                 P+iv++c+  i+ +gld egiyR+s++   v +lre +dk+++++s      +++++d++ v slLK f+++lp+ Ll+k++ ee+  ++ ++d+++r+
  CCD23499.1 557 PAIVRQCIYVIDTYGLDLEGIYRKSANVLDVSKLREDIDKDPSNVSmilpskNFHDTDIYLVGSLLKAFFSSLPDTLLPKSIAEEVKICCAIDDPKTRK 655
                 99******************************************99***************************************************** PP

                 HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT-TSS CS
      RhoGAP  94 ealkellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrpkse 149
                 + ++ l+ kLP++++ tLr+Ll hLkr+ e++++n+M++k L+i+++Pt+++p+ +
  CCD23499.1 656 NYMHGLIYKLPDAQYWTLRALLFHLKRILEHESKNRMNLKGLCIIWGPTIIPPNVD 711
                 ***************************************************99865 PP

>> FCH  Fes/CIP4, and EFC/F-BAR homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   7.6   1.8e-07     0.001       3      53 ..      85     170 ..      83     224 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.8e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----TT.-....................................... CS
         FCH   3 kvlqkrleqgialledlqeflkeRaeiEkeYakkLqkLakkylkrr.kkks...................................e 53 
                 ++l++rl+q++ ++e++ +f++++   E+e+ + L+k  k +  +   + s                                   e
  CCD23499.1  85 NALLSRLKQSLLTCEEFTKFIRKKYIFEEEHTQELSKQYKHFFTTAsQS-SslifvrkpihdvlafdgklsvvkesyvkalqkmydE 170
                 789***************************************9964222.1466666666666666666666555544444443433 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.7      0.21   1.2e+03      18      55 ..      94     131 ..      69     137 .. 0.59
   2 ?   13.2   3.7     1e-05      0.06       9     104 ..     158     252 ..     152     263 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.21
       Sec34  18 qtdealeqLeeleekfksvsektsslheaceqlleeqk 55 
                 ++ +++e  + +++k+ + +e t++l+++ ++ ++  +
  CCD23499.1  94 SLLTCEEFTKFIRKKYIFEEEHTQELSKQYKHFFTTAS 131
                 33334444444566677777777777777766666555 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1e-05
       Sec34   9 eeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyFeeldpitrkLnspgsslvksesFlemLkklDec 104
                 e+ +++l +  de+  +L ++++  ksv+e +++l+++  + +++ ++ ++ + ++ ++++  +  dp+++kL   gs+  ++e+  e+L+k+D++
  CCD23499.1 158 ESYVKALQKMYDEISALLLTMTKMRKSVKEHSRRLEKDVSDAIHSAEKAQNRYTSLCQDWDKLRMTDPTKTKLTLRGSK-TTKEQEEELLRKIDSA 252
                 5667888888999******************************************************************.999999********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1331  (0.0742373); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5322.62
//
Query:       CCD23500.1  [L=235]
Description: hypothetical protein NDAI_0B04650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-95  318.1   0.0    2.9e-95  317.9   0.0    1.0  1  Methyltransf_PK  AdoMet dependent proline di-methyltransferas
    2.6e-08   34.5   0.0    4.5e-08   33.7   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
    1.5e-07   31.4   0.0    3.9e-07   30.1   0.0    1.6  1  Methyltransf_23  Methyltransferase domain
    2.1e-05   25.0   0.0    3.8e-05   24.3   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
      0.004   17.9   0.0     0.0084   16.8   0.0    1.6  1  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.016   15.8   0.0      0.029   15.0   0.0    1.4  1  Bin3             Bicoid-interacting protein 3 (Bin3)
      0.034   13.5   0.0      0.067   12.5   0.0    1.5  1  Methyltransf_2   O-methyltransferase domain
       0.07   12.4   0.0      0.097   11.9   0.0    1.2  1  CMAS             Mycolic acid cyclopropane synthetase


Domain annotation for each model (and alignments):
>> Methyltransf_PK  AdoMet dependent proline di-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  317.9   0.0   1.3e-98   2.9e-95       1     218 []       9     231 ..       9     231 .. 0.98

  Alignments for each domain:
  == domain 1  score: 317.9 bits;  conditional E-value: 1.3e-98
  Methyltransf_PK   1 deeevyekaiaYWesveadvdGvLGGyg...avskiDvkgsrkflkklkkeslpgkrevkvaldcGaGiGrvtknlLlkllskvDlvepvekfl 91 
                      d+++ ye+ai+YW++  a+vdGvLGGyg   +v+++Dv gs++fl+klk+++ p++++ k+ +d+GaGiGrvtk++L+k+ + +Dlvepv+ f 
       CCD23500.1   9 DSHIDYEDAIDYWTNTPATVDGVLGGYGegtTVPTMDVLGSNHFLRKLKSRMIPEENYRKYGADIGAGIGRVTKTMLHKHCAVIDLVEPVDPFC 102
                      57889**********************88899************************************************************** PP

  Methyltransf_PK  92 ekakeelae..ekkkvgkvyvvglqeftPeegrYdliWiqWcvghLtDedlvaflkrckkalkpnGlivvkenvakeekdelDkeDssvtrsea 183
                      +++kee+ e  ++ k+g++y+vg+q++tPeeg+Y+liW+qWcvghL+De+lv+f++rc+k+l+pnG+i+vken++ +++d++D eDssvtrs++
       CCD23500.1 103 KQIKEEVKElsKQGKIGQIYQVGMQDWTPEEGKYWLIWCQWCVGHLPDEELVKFFQRCVKGLQPNGTIIVKENNTPSNQDDFDPEDSSVTRSDK 196
                      ******99988899******************************************************************************** PP

  Methyltransf_PK 184 klkklfkkagLklvaeelqkglPkelypvkmyaLk 218
                      k+k+lf+k+gLkl+a+++qkglP+elypv+myaLk
       CCD23500.1 197 KFKELFEKSGLKLIATDRQKGLPEELYPVRMYALK 231
                      *********************************97 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0     2e-11   4.5e-08       3      97 .]      72     168 ..      71     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 2e-11
                      EET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH...TTTTEEEEESBCCGBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHE CS
  Methyltransf_25   3 dlGcGtGrltlalakrlgkakvtgvDiseemleaareraee...eglnvefvqgdaedlpfedgsfDlvvssgalhhlsdedlekalkeiarvL 93 
                      d+G+G Gr+t+ ++++   a +  v++ + ++++++e+++e   +g   +++q  ++d+  e+g++ l++++ ++ hl+de+l k+++++ + L
       CCD23500.1  72 DIGAGIGRVTKTMLHKH-CAVIDLVEPVDPFCKQIKEEVKElskQGKIGQIYQVGMQDWTPEEGKYWLIWCQWCVGHLPDEELVKFFQRCVKGL 164
                      9*********9999884.79999*************99988654444778899999***************999******************** PP

                      EEEE CS
  Methyltransf_25  94 kpgG 97 
                      +p+G
       CCD23500.1 165 QPNG 168
                      **99 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.7e-10   3.9e-07       8     162 ..      52     209 ..      48     212 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.7e-10
  Methyltransf_23   8 elsdklerllpklraggrvLdiGcGtGillevlrengf....svtgvDlspeaveiae.......kakkaqkdqfdeqeaaepqgkfdlIvlre 90 
                      +l+++  r+ p+++ ++   diG+G G++++ +  + +     v+ vD+ ++++++         k+ +  ++ +  q++++++gk+ lI +  
       CCD23500.1  52 FLRKLKSRMIPEENYRKYGADIGAGIGRVTKTMLHKHCavidLVEPVDPFCKQIKEEVkelskqgKIGQIYQVGM--QDWTPEEGKYWLIWCQW 143
                      678888999999*********************555554474466999999999887688888854444444444..89*************** PP

  Methyltransf_23  91 vlehvpdppellrqiatllk...pgGylllseplaslkedrllldwlylvpagrhisffsarslkelleeaGlev 162
                      + +h+pd +el++ +++++k   p+G +++ e + ++ +  +++         + +   s + +kel+e++Gl++
       CCD23500.1 144 CVGHLPD-EELVKFFQRCVKglqPNGTIIVKENNTPS-NQDDFDPE-------DSSVTRSDKKFKELFEKSGLKL 209
                      *******.666666666666666*********98763.22223222.......2222234466666666666665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.7e-08   3.8e-05       2      96 .]      72     172 ..      71     172 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.7e-08
                      EET-TTSHHHHHHH.HTTSEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCCTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEE CS
  Methyltransf_11   2 dvGcGtGrlaeala.krgarvvgvDlskemlklakekaseegl...kvefvvadaeklpfednsfDlvvssevlhhv..edpekalkeiaRvLk 89 
                      d+G+G Gr+++ +  k++a +  v++ + + k+ ke+++e        ++ +  +++   e++++ l+++++++ h+  e++ k+++ +++ L+
       CCD23500.1  72 DIGAGIGRVTKTMLhKHCAVIDLVEPVDPFCKQIKEEVKELSKqgkIGQIYQVGMQDWTPEEGKYWLIWCQWCVGHLpdEELVKFFQRCVKGLQ 165
                      9***********994555444445555555555555555554455433578888888878999**************999************** PP

                      EEEEEEE CS
  Methyltransf_11  90 pgGllvi 96 
                      p+G++++
       CCD23500.1 166 PNGTIIV 172
                      ***9986 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.8e-06    0.0084       2      99 .]      72     170 ..      71     170 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.8e-06
  Methyltransf_12   2 eiGcGtGsllralleklpdieyt.gvDispsaiedakeklakrenn.nnnnvelealdlldldggssfDlvvasnvlhhl..kdirevldnirk 91 
                      +iG+G G++++ +l k  ++ ++  v++   ++++ ke+ ++ +++ +  ++     ++   ++ +++ l+++  ++ hl  +++ ++++++ k
       CCD23500.1  72 DIGAGIGRVTKTMLHK--HCAVIdLVEPVDPFCKQIKEEVKELSKQgKIGQIYQVGMQDWTPEE-GKYWLIWCQWCVGHLpdEELVKFFQRCVK 162
                      8***************..5555559999999998888888877654133344444444333333.6999*****999999899999******** PP

  Methyltransf_12  92 lLkpgGrl 99 
                       L p+G +
       CCD23500.1 163 GLQPNGTI 170
                      ******75 PP

>> Bin3  Bicoid-interacting protein 3 (Bin3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.3e-05     0.029      17      50 ..     148     181 ..     140     223 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
        Bin3  17 kgDeglkrlfkkiyellkpgGvlilEpqewksYk 50 
                   De l+++f+++++ l+p+G++i+  ++  s +
  CCD23500.1 148 LPDEELVKFFQRCVKGLQPNGTIIVKENNTPSNQ 181
                 569**********************988776655 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     3e-05     0.067      68     175 ..      72     183 ..      68     208 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3e-05
                     EET-TTSHHHHHHHHH-TT-EEEEEE-HHHH....HHHHHHS.-----TTEEEE.ES-TTTS-----SEEEE...ESSGGGS-HHHHHHHHHHHH CS
  Methyltransf_2  68 DvGGGtGalakaivsayPtikvivfDlpeVv....eaAkehl.sageeervefv.gGdffkdslPeaDaill...krvlhDwsdekcvklLkrvk 153
                     D+G G+G + k++ +++    + v Dl e v    ++ ke + + +++ ++  + +  + +d  Pe   + l   ++ +    de+ vk+ +r+ 
      CCD23500.1  72 DIGAGIGRVTKTMLHKH----CAVIDLVEPVdpfcKQIKEEVkELSKQGKIGQIyQVGM-QDWTPEEGKYWLiwcQWCVGHLPDEELVKFFQRCV 161
                     55555555555555443....34444444331110344444333344444432202223.366676555555111455556789*********** PP

                     HH--TT-EEEEEE----TTS-- CS
  Methyltransf_2 154 kalpagGkvivveavlgadpsg 175
                     k l+++G +iv e   + ++++
      CCD23500.1 162 KGLQPNGTIIVKENNTPSNQDD 183
                     *************998877654 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.3e-05     0.097      68     170 ..      72     178 ..      68     198 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.3e-05
                 EES-TTSHHHHHHHHHH--EEEEEE.....S-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-E CS
        CMAS  68 diGcGWGslvrraverydvkvvglT.....lSkeqaklakkrvdeldlerkvevklldyedldekvdrvvsvgafehvgkenydtffkklkkllkedGl 161
                 diG+G G +++++ ++    v+ l      + k+ ++ +k+  ++  + +  +v ++d+   ++k+  +     + h+  e++ +ff+++ k l+++G+
  CCD23500.1  72 DIGAGIGRVTKTMLHK-HCAVIDLVepvdpFCKQIKEEVKELSKQGKIGQIYQVGMQDWTPEEGKYWLIWCQWCVGHLPDEELVKFFQRCVKGLQPNGT 169
                 99**********9999.666776652222233333444444444445667889********************************************** PP

                 EEEEEEEE- CS
        CMAS 162 lllhtitsl 170
                 ++++   ++
  CCD23500.1 170 IIVKENNTP 178
                 998865555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1752.66
//
Query:       CCD23501.1  [L=110]
Description: hypothetical protein NDAI_0B04660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-06   29.0   0.2      2e-06   28.5   0.2    1.4  1  AIM5      Altered inheritance of mitochondria 5
  ------ inclusion threshold ------
      0.051   13.3   0.0        0.1   12.3   0.0    1.5  1  YcxB      YcxB-like protein


Domain annotation for each model (and alignments):
>> AIM5  Altered inheritance of mitochondria 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.2   2.2e-10     2e-06      33      56 ..      82     105 ..      40     108 .. 0.83

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 2.2e-10
        AIM5  33 erpsfvEtaKdrWNeEvegavrwa 56 
                  r+++ Et+Kd+WN+++++ vrw+
  CCD23501.1  82 MRSNLNETMKDIWNKQIRTIVRWI 105
                 6999*******************8 PP

>> YcxB  YcxB-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.1e-05       0.1      30      57 ..      20      48 ..      18      50 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.1e-05
        YcxB 30 dyfyLflsggsafiiPKraf.tkeeaeaf 57
                +y+y++ s++++ iiPKr+   ++e +++
  CCD23501.1 20 SYYYIYGSNSQIPIIPKRWRrVEDEVDQL 48
                79*********99*****86666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       687  (0.0383178); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 883.58
//
Query:       CCD23502.1  [L=498]
Description: hypothetical protein NDAI_0B04670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.6e-204  676.8   0.0   9.1e-204  676.5   0.0    1.1  1  SHMT             Serine hydroxymethyltransferase
  ------ inclusion threshold ------
      0.074   12.7   0.3        5.6    6.7   0.0    2.3  2  UreE_N           UreE urease accessory protein, N-terminal do
       0.17   11.2   0.0        0.2   10.9   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  676.5   0.0  1.5e-207  9.1e-204       2     399 .]      41     439 ..      40     439 .. 0.99

  Alignments for each domain:
  == domain 1  score: 676.5 bits;  conditional E-value: 1.5e-207
                 HHHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHHH CS
        SHMT   2 eesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqanl 100
                 +e dpe+ +i+++e++rqk++i+li+senftsk+v+++lGs+++nky+eGyPG+ryyGG++f+d++e+l+q+ra+el++l+p++wgvnvq+lsG++anl
  CCD23502.1  41 REIDPEMNSILEQERNRQKHSITLIPSENFTSKSVMDLLGSEMQNKYSEGYPGERYYGGNQFIDMAESLCQKRALELYNLNPEEWGVNVQALSGAPANL 139
                 689************************************************************************************************ PP

                 HHHHHHT-TT-EEEEESCTTTSTGGGT-BTSS.-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT- CS
        SHMT 101 avytallepgdrilgldladGGhlthGakves.kkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevga 198
                 + y+al+++gdr++gldl++GGhl+hG+++ s +kis +sk+f++++ykvd etglidy++l  ++k+f+Pk+ivaGtsay+rl+dy++++eiad +ga
  CCD23502.1 140 YTYSALMNVGDRLMGLDLPHGGHLSHGYQLASgTKISYVSKYFNTMPYKVDVETGLIDYEQLSMTSKLFRPKIIVAGTSAYARLLDYKKFKEIADGCGA 238
                 *****************************98879***************************************************************** PP

                 EEEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEETTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSHH CS
        SHMT 199 yllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvdktgkevleelekkinsavfPglqGGPlnhviaakavalkealepe 297
                 yl++dmahi+Glvaa+vi sPf+y+d+vtttthk+lrGprg++i++rkg+++ +k+gke++++lekkin++vfPg+qGGP+nh+i+a+avalk+a++pe
  CCD23502.1 239 YLMSDMAHISGLVAANVIESPFKYSDIVTTTTHKSLRGPRGAMIFFRKGLRKTTKSGKEIHYDLEKKINFSVFPGHQGGPHNHTISALAVALKQAMTPE 337
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTSSTTTT-SEEEEESHHHHHTT--HHHHHHHH CS
        SHMT 298 fkvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgdksalvtsGlrlGtpaltsrgfkeedlekva 396
                 fk+yq+++++nak+l+e+l ++g+klvsgGtdnhl+l+dl++ g+dG+r e++lek+ni+anknt+Pgdksal++sGlr+Gtpa+t+rgf+ ++++kva
  CCD23502.1 338 FKQYQQNIVNNAKVLSEELLKRGFKLVSGGTDNHLLLIDLSSLGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGPAEFTKVA 436
                 *************************************************************************************************** PP

                 HHH CS
        SHMT 397 kfi 399
                 ++i
  CCD23502.1 437 EYI 439
                 *97 PP

>> UreE_N  UreE urease accessory protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1    0.0086        51      38      51 ..     153     166 ..     148     173 .. 0.87
   2 ?    6.7   0.0   0.00093       5.6      25      44 ..     285     304 ..     283     307 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0086
                 EEEE-SS-T---TT CS
      UreE_N  38 vglrLprgtvLrdG 51 
                  gl+Lp+g +L++G
  CCD23502.1 153 MGLDLPHGGHLSHG 166
                 59***********9 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00093
                 -SEEEEE-TTS-EEEEE-SS CS
      UreE_N  25 krRlrvttdsGrevglrLpr 44 
                 ++ lr+tt sG+e+  +L++
  CCD23502.1 285 RKGLRKTTKSGKEIHYDLEK 304
                 5669*************986 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.3e-05       0.2     151     241 ..     227     364 ..      82     465 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.3e-05
                      HHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEESSSTT--SS-EEEEE-HH............................... CS
  Beta_elim_lyase 151 revaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmslkKdllanvGgvlafrddel............................. 215
                      ++ ++ia+  g  l+ D A +   +   +  +++ f+y D+vt    K l  + G++++fr+                                
       CCD23502.1 227 KKFKEIADGCGAYLMSDMAHISGLV--AANVIESPFKYSDIVTTTTHKSLRGPRGAMIFFRKGLRkttksgkeihydlekkinfsvfpghqggp 318
                      5566777777777888888776544..334567789**************************976999************************** PP

                      ......................HHHHHHHHHHHHT---SSTHHHHH CS
  Beta_elim_lyase 216 ....................edylaerveqrkylggglrqagvlaa 241
                                          ++y ++ v+ +k l ++l + g++ +
       CCD23502.1 319 hnhtisalavalkqamtpefKQYQQNIVNNAKVLSEELLKRGFKLV 364
                      *****************99999999999999999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       664  (0.037035); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3344.34
//
Query:       CCD23503.1  [L=223]
Description: hypothetical protein NDAI_0B04680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-39  134.6   0.4    3.2e-39  134.1   0.4    1.2  1  Ras           Ras family
    4.1e-31  107.7   0.8    5.8e-31  107.2   0.4    1.5  1  Roc           Ras of Complex, Roc, domain of DAPkinase
    7.5e-17   61.3   0.3    1.2e-16   60.7   0.3    1.3  1  Arf           ADP-ribosylation factor family
    3.8e-10   39.9   0.1    6.4e-10   39.1   0.1    1.4  1  MMR_HSR1      50S ribosome-binding GTPase
    5.3e-09   35.8   0.1    7.4e-09   35.3   0.1    1.2  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
    1.1e-07   31.6   0.1    4.5e-07   29.6   0.1    2.1  1  GTP_EFTU      Elongation factor Tu GTP binding domain
    5.4e-07   29.7   0.7     0.0052   16.7   0.1    2.3  2  RsgA_GTPase   RsgA GTPase
    3.3e-06   26.7   0.2    4.7e-06   26.2   0.2    1.3  1  SRPRB         Signal recognition particle receptor beta subun
    0.00047   19.7   0.6       0.73    9.3   0.0    2.6  3  FeoB_N        Ferrous iron transport protein B
     0.0076   16.7   0.1      0.013   15.9   0.1    1.6  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.016   14.4   1.8       0.03   13.5   1.8    1.5  1  G-alpha       G-protein alpha subunit
      0.023   14.7   0.4      0.043   13.8   0.4    1.5  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
      0.027   14.4   1.1        2.2    8.3   0.0    3.3  3  GA-like       GA-like domain
      0.045   13.0   0.8       0.08   12.2   0.1    1.6  2  Septin        Septin
      0.073   12.8   1.6        4.1    7.1   1.6    3.0  1  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
       0.13   12.6   0.5       0.47   10.9   0.5    1.9  1  AAA           ATPase family associated with various cellular 


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.1   0.4   2.8e-42   3.2e-39       1     161 [.      14     191 ..      14     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 134.1 bits;  conditional E-value: 2.8e-42
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET.........TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd.........gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenv 90 
                 K+vl+G+s+vGKts++++  ++kF++   +Tig++f+tk+i+++           +v++eiwDTAGqe+++sl+++yyr+++++l+v+d+t+++s++++
  CCD23503.1  14 KVVLLGESSVGKTSIVTKISTGKFQKG-AATIGAAFTTKQIQFNeieengveqCFKVSIEIWDTAGQERYRSLTPMYYRNTDVALIVFDLTQEASLKKA 111
                 9***********************986.79************9999998886556899***************************************** PP

                 HHHHHHHHHHST......TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHT....SEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras  91 kkwveeikrvae......envpivLvGnKvDleekravsteegeelakelg....lkfletSAktnenveeafeellreil 161
                 ++w++e+k++ +      ++++++Lv+nKvDl  k+  +++  + + ++++    ++   +SAktne+++e+f++++++i 
  CCD23503.1 112 RSWIDELKSYLDsssrrdKHISMILVANKVDLVAKNDGTFDINQ-YLENWDipseYPLKIVSAKTNEGINELFDDIIKKIP 191
                 **********9999999999*************98887766554.5555542211455779*****************985 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.4   5.2e-34   5.8e-31       1     120 []      14     143 ..      14     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 107.2 bits;  conditional E-value: 5.2e-34
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTB..TTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHH...HC CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvend..kkvkkvklniWDtaGqerfrslhplylreaalailvydsrss...en 94 
                 Kvvl+G+s+vGKts+++++ ++kf++   +tig+ f+tk++ +++++e++  ++  kv+++iWDtaGqer+rsl+p+y+r+ ++a++v+d +++   ++
  CCD23503.1  14 KVVLLGESSVGKTSIVTKISTGKFQKG-AATIGAAFTTKQI-QFNEIEENgvEQCFKVSIEIWDTAGQERYRSLTPMYYRNTDVALIVFDLTQEaslKK 110
                 9***********************765.89*********98.577776542234456999******************************554412366 PP

                 HHHHHHHHHHH.......CSSS-EEEEEE-TTT CS
         Roc  95 lkeWlkelkkv.......agkspvilvgnkiDl 120
                 +++W++elk++        +++ +ilv+nk+Dl
  CCD23503.1 111 ARSWIDELKSYldsssrrDKHISMILVANKVDL 143
                 789******9943322111234689******95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.3   1.1e-19   1.2e-16      14     174 ..      12     189 ..       6     190 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 1.1e-19
                 EEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSS..EEEEEEEE...........TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHH CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvttvPTig..fnveelei...........knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRlee 99 
                 +l+++llG  + GKt i++k++++++++   Tig  f+++++++            ++++++wD  Gqe+ R+l   Y+++td+ + v D +++  l++
  CCD23503.1  12 DLKVVLLGESSVGKTSIVTKISTGKFQKGAATIGaaFTTKQIQFneieengveqcFKVSIEIWDTAGQERYRSLTPMYYRNTDVALIVFDLTQEASLKK 110
                 589*****************************9855677788778888888876667899*************************************99 PP

                 HHH...HHHHHCTSGCCT..TSEEEEEEE-TTSTTSS-.HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 100 ake...eLkalleeeelk..evallvlaNKqDlpeals.eeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 a++   eLk+ l+++  +  ++ ++++aNK Dl    + + ++++ l+  ++ ++ +l+i  +sa ++eg++e ++ ++++
  CCD23503.1 111 ARSwidELKSYLDSSSRRdkHISMILVANKVDLVAKNDgTFDINQYLENWDIPSEYPLKI--VSAKTNEGINELFDDIIKK 189
                 9963337888888776654478999*******9876652569999999999997777776..58999********999876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.1   5.7e-13   6.4e-10       1     114 []      14     140 ..      14     140 .. 0.70

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 5.7e-13
                 EEEEEESTTSSHHHHHHHHHT.S...TEEESSSTTSSSSEEEEEEEETTEE......EEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTT. CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg.e...kaivsdkpgtTrdinegrvklkgke......ielvDtpGliegaseekglgkaflaleeadlillvvdasee. 88 
                 +v+++G + vGK++++ +++  +    a +   ++tT++i++ +++++g e      ie++Dt+G  e   + ++l+  + +  ++d++l+v+d+++e 
  CCD23503.1  14 KVVLLGESSVGKTSIVTKISTgKfqkGAATIGAAFTTKQIQFNEIEENGVEqcfkvsIEIWDTAG-QE---RYRSLTPMYYR--NTDVALIVFDLTQEa 106
                 699****************652344357888899************665223555559*******.54...44477777774..789*******99443 PP

                 CSHHHH...HHHHHHHHH.....TTSEEEEEEES CS
    MMR_HSR1  89 klkpld...eeleellee.....akkplilvlnk 114
                 +lk+ +    el+++l++     +++ +ilv+nk
  CCD23503.1 107 SLKKARswiDELKSYLDSssrrdKHISMILVANK 140
                 3333321114444444336666677779999998 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   6.6e-12   7.4e-09       1     127 [.      14     147 ..      14     161 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 6.6e-12
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgati........dveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesr.. 89 
                 kv+L+G+s+ GKts+   i      + + ++ga+         ++e++ v+   ++ +++wD  Gqe++   +        +rn +v + VfD +++  
  CCD23503.1  14 KVVLLGESSVGKTSIVTKISTGKFQKGAATIGAAFttkqiqfnEIEENGVEQCFKVSIEIWDTAGQERYRSLT-----PMYYRNTDVALIVFDLTQEas 107
                 89*************************999999888899999999999999999*************997765.....7889999********997754 PP

   Gtr1_RagA  90 ..eleedletlkeilealrqyspeakvfvlihKmDliqed 127
                   + ++ +++lk++l+  ++ ++++++    +K+Dl++++
  CCD23503.1 108 lkKARSWIDELKSYLDSSSRRDKHISMILVANKVDLVAKN 147
                 53477779999**************************876 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.1     4e-10   4.5e-07      58     193 ..      50     191 ..      13     192 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4e-10
                 CEEEEEE.......TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB..........STHHHHHHHHHHHHTTTEEEEEEESCGST.HHH CS
    GTP_EFTU  58 saaisle.......ketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG..........vepqteevlrlalkegvpiivfiNKmDrl.kae 138
                 +++i+++       ++  k  i + Dt G + + + +   +r +D+a++v+d ++            e ++       +++++ +i++ NK+D + k++
  CCD23503.1  50 TKQIQFNeieengvEQCFKVSIEIWDTAGQERYRSLTPMYYRNTDVALIVFDLTQEaslkkarswiDELKSYLDSSSRRDKHISMILVANKVDLVaKND 148
                 333333366676666788999*********************************997777777743333333344445566777***********5333 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 139 lkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvellp 193
                     ++++ ++                +e+p+  +Sa+++eg+++l++ +++++p
  CCD23503.1 149 GTFDINQYLENW----------DIP--SEYPLKIVSAKTNEGINELFDDIIKKIP 191
                 333333333333..........334..379**********************998 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00021      0.23      96     125 ..       9      38 ..       2      63 .. 0.70
   2 !   16.7   0.1   4.6e-06    0.0052       4      98 ..      81     187 ..      78     191 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
                  HCTTSEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallpelel 125
                  ++ d  +vl+G+S vGK++++ ++   + +
   CCD23503.1   9 YCCDLKVVLLGESSVGKTSIVTKISTGKFQ 38 
                  55566789***************9986433 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 4.6e-06
                  -S-EETTTTEES--EEEEEEESTTT......T--HHHHHHHHHHH..HHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTT....SEEEE--TTTHTT CS
  RsgA_GTPase   4 RknelvrpkvaNvdqllivvslkep......elslnlldrfLvla..eekgiepvivlnKiDlleeeeeleelkeelealg....yevllvsaktkeg 89 
                  R  +l+     N d +liv+ l+++      +   + l+ +L      +k+i++++v nK+Dl+ +++ + ++++ le+++    y++ +vsakt+eg
   CCD23503.1  81 RYRSLTPMYYRNTDVALIVFDLTQEaslkkaRSWIDELKSYLDSSsrRDKHISMILVANKVDLVAKNDGTFDINQYLENWDipseYPLKIVSAKTNEG 178
                  5566666666788888888765532100000333455777776541156789****************6666666666665333388999******** PP

                  HHHHHHHCT CS
  RsgA_GTPase  90 leelkellk 98 
                  ++el + + 
   CCD23503.1 179 INELFDDII 187
                  **9987765 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.2   4.2e-09   4.7e-06       5     138 ..      14     158 ..      12     190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 4.2e-09
                 EEEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG..............GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHH CS
       SRPRB   5 avllvGlsdsGKTslftrLttdsvkktvtSqessaalkv...........ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkev 92 
                 +v+l+G s  GKTs+ t+++t++++k  + + + +++k            ++  + ++++ D  G+e+ r+ l+  +  ++ +  +vf +   +  k++
  CCD23503.1  14 KVVLLGESSVGKTSIVTKISTGKFQKGAATIGAAFTTKQiqfneieengvEQCFKVSIEIWDTAGQERYRS-LTPMYYRNTDVALIVFDLTQEASLKKA 111
                 589**************************9966665554488877664333334568899********997.5555566677999************** PP

                 HHHHHHHHHHHHHHHHHTT---EEEEEE-TTSTT---HH.HHHHHHH CS
       SRPRB  93 kevAEllyeilliteklkdavdiliACnKqelflakspk.likdaLE 138
                 ++  + l + l  + ++ +++++++  nK +l+     +  i + LE
  CCD23503.1 112 RSWIDELKSYLDSSSRRDKHISMILVANKVDLVAKNDGTfDINQYLE 158
                 ***************9*99***99999****8644333214666666 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.2     0.002       2.2       2      27 ..      14      40 ..      13      64 .. 0.72
   2 ?   -0.8   0.0      0.88   9.9e+02      78     134 ..      66     122 ..      47     128 .. 0.73
   3 !    9.3   0.0   0.00065      0.73     105     156 .]     131     186 ..     125     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.002
                EEEEEESTTSSHHHHHHHHH.TTSEEE CS
      FeoB_N  2 tvalvGnpnvGkttlfnalt.gakqkv 27
                +v+l+G+  vGkt+++ +++ g+ qk 
  CCD23503.1 14 KVVLLGESSVGKTSIVTKIStGKFQKG 40
                799*************99961444544 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.88
                 SSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH CS
      FeoB_N  78 epdvvvnvvdatnlernLyLtlqllelgvpvvlalnmideaekkgieidlkkLsekL 134
                  ++v +++ d++  er   Lt      +   +++++++ ea+ k+ +  +++L++ L
  CCD23503.1  66 CFKVSIEIWDTAGQERYRSLTPMYYRNTDVALIVFDLTQEASLKKARSWIDELKSYL 122
                 456778888888888888888777776667777777777777776666666666666 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00065
                 TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-....EEEEBTTTTBTHHHHHHHH CS
      FeoB_N 105 gvpvvlalnmideaekkgieidlkkLsekLgvp....vvktsakkkegieellkai 156
                 +++++l+ n++d + k+  + d+++  e+ ++p       +sak++egi+el + i
  CCD23503.1 131 HISMILVANKVDLVAKNDGTFDINQYLENWDIPseypLKIVSAKTNEGINELFDDI 186
                 6789*********************9999987522226678999*******98865 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.1e-05     0.013      27     136 ..      15     131 ..      10     216 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.1e-05
      AAA_16  27 vllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala..................a 107
                 v+l Ges vGK+s+v+++ +   ++g+ ++ + ++        ++  + + +e  ++q        + e w+++ +e+++                   
  CCD23503.1  15 VVLLGESSVGKTSIVTKISTGKFQKGAATIGAAFTTK------QIQFNEI-EENGVEQCFKV----SIEIWDTAGQERYRsltpmyyrntdvalivfdL 102
                 799****************855555555544444444......2222333.22444444444....555666666666666667777777777766665 PP

      AAA_16 108 vpelagaeasrllellkrllallsrderp 136
                 ++e++ ++a++  ++lk+ l+ +sr+++ 
  CCD23503.1 103 TQEASLKKARSWIDELKSYLDSSSRRDKH 131
                 55555556688888888888555555554 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.8   2.6e-05      0.03      24     146 ..      13     199 ..       5     216 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.6e-05
                 EEEEEEESTTSSHHHHHHHHHHHC.S--.......--HHHHHC.CHHHHHHHHHHHHHHHHHHHHHTT............................HHH CS
     G-alpha  24 vkllllGqseSGKsTilkqlklly.kkg.......fseeelat.wraviqlnivrsiktilealesleselsesf.....................elq 92 
                 +k++llG+s+ GK++i+ ++ + + +kg       f+++  ++ ++++  + + +++k  +e+ ++ ++e  +s+                     +l+
  CCD23503.1  13 LKVVLLGESSVGKTSIVTKISTGKfQKGaatigaaFTTK--QIqFNEIEENGVEQCFKVSIEIWDTAGQERYRSLtpmyyrntdvalivfdltqeaSLK 109
                 69******************9544233357777777766..3335555555566677777888888766665555888999999999996666555444 PP

                 C-SS-SCCCS-HCHHHH......................................HHCCHHC..............-HCHHHHHHHHC.CSHHHHHH CS
     G-alpha  93 elkerldplkkveasliaklssateee............................qeiefnp..............raevgedikaLw.ndpgiqel 146
                 + +  +d+lk++ +s +       +                              +++ +++               +e+++di++   +d++++e 
  CCD23503.1 110 KARSWIDELKSYLDSSS-------RRDkhismilvankvdlvakndgtfdinqylENWDIPSeyplkivsaktnegINELFDDIIKKIpKDQFVKED 199
                 44444444444444433.......3333334556776666666655556655666444444444444442222222223333333333244444444 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.4   3.9e-05     0.043      42     103 ..     115     189 ..      92     191 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.9e-05
  MMR_HSR1_Xtn  42 vDdlidvieg.nr..vYipclyvlNKiDlislee.ldelare.........pnsvviSaekelnldeLkekiwee 103
                   +D+l   +   +r  + i +++v NK+Dl+ +++ + ++++              ++Sa+++ +++eL ++i ++
    CCD23503.1 115 IDELKSYLDSsSRrdKHISMILVANKVDLVAKNDgTFDINQYlenwdipseYPLKIVSAKTNEGINELFDDIIKK 189
                   56666666431224599************6655412233332334566432344559************999876 PP

>> GA-like  GA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.2   3.6e+03      18      33 ..      57      71 ..      55      75 .. 0.74
   2 ?    2.9   0.2     0.094     1e+02      27      43 ..     129     145 ..     101     146 .. 0.71
   3 ?    8.3   0.0    0.0019       2.2      29      50 .]     166     187 ..     163     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.2
     GA-like 18 eLkaaGitsdfyiekI 33
                e +++G+ +  +   I
  CCD23503.1 57 EIEENGV-EQCFKVSI 71
                7889999.77776555 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.094
     GA-like  27 dfyiekIdkAkTvEgVk 43 
                 d+ i++I  A++v+ V 
  CCD23503.1 129 DKHISMILVANKVDLVA 145
                 78899999999999986 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0019
     GA-like  29 yiekIdkAkTvEgVkaLKeeil 50 
                 y  kI +AkT Eg ++L ++i+
  CCD23503.1 166 YPLKIVSAKTNEGINELFDDII 187
                 5669*************99998 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   7.1e-05      0.08       3      71 ..      11      78 ..      10      81 .. 0.82
   2 ?   -1.9   0.0       1.4   1.6e+03     189     211 ..     153     175 ..     125     207 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.1e-05
                EEEEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE--- CS
      Septin  3 ieftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpg 71
                +++ +++ Ges++Gkt+++  + + + ++    +  +  ++k++++++ ++   e+ +k+ + + Dt g
  CCD23503.1 11 CDLKVVLLGESSVGKTSIVTKISTGKFQKGA-ATIGAAFTTKQIQFNEIEENGVEQCFKVSIEIWDTAG 78
                68999*************9998877777765.4444566778899998888888999**********87 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.4
                 CCHHHHHHHHHHC-SEEB-SSSS CS
      Septin 189 eeakelseklkeslPfaivgsne 211
                  +++ ++ ++ +++P  iv++++
  CCD23503.1 153 INQYLENWDIPSEYPLKIVSAKT 175
                 33344445555555555555543 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.6    0.0037       4.1       3      24 ..      14      35 ..      12     188 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0037
   PduV-EutP  3 killiGkvgsGKttLtqalkge 24
                k++l+G++ +GKt++  +++  
  CCD23503.1 14 KVVLLGESSVGKTSIVTKISTG 35
                8999**********99998764 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   0.00042      0.47       1     118 [.      15     147 ..      15     159 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00042
                 EEEESSTTSSHHHHHHHHHHH..........HTHEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTC CS
         AAA   1 vllyGppGtGKTllakavake..........lgvefleisgsellsk............yvgesekkirelfkeakekakpsilfiDEidalaksrsgs 77 
                 v+l G   +GKT+++  + +           + ++  +i+  e+ ++            +  +++++ r l     ++ +   +++D   +   ++   
  CCD23503.1  15 VVLLGESSVGKTSIVTKISTGkfqkgaatigAAFTTKQIQFNEIEENgveqcfkvsieiWDTAGQERYRSLTPMYYRNTDVALIVFDLTQEASLKK--- 110
                 679999************998666555543323555677777777663444455555554444555555554444333344788888766666666... PP

                 CCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHH CS
         AAA  78 eseeeervvnqLlteldgvkkkeskvivigatnrpdkldpa 118
                     +++ +++L + ld  +++++++ +i+++n++d + + 
  CCD23503.1 111 ----ARSWIDELKSYLDSSSRRDKHISMILVANKVDLVAKN 147
                 ....8999**************999*********9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1624.34
//
Query:       CCD23504.1  [L=1902]
Description: hypothetical protein NDAI_0B04690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-46  157.4  10.7    1.1e-45  156.3  10.7    1.5  1  Rif1_N    Rap1-interacting factor 1 N terminal


Domain annotation for each model (and alignments):
>> Rif1_N  Rap1-interacting factor 1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.3  10.7   5.9e-50   1.1e-45       8     374 .]     249     673 ..     244     673 .. 0.88

  Alignments for each domain:
  == domain 1  score: 156.3 bits;  conditional E-value: 5.9e-50
                 ....HHHHHS---BGGG....HHHHHHHHHHHHHHHH..............HHHTSSSSS---HH..HHHHHHHHHHHHHSSHHHHHHHTT.....HHH CS
      Rif1_N   8 srlDaYmtLlraLkasdnlpdrkalqkkmslllqfiq..............rDisssssekgnldssLviqAlkllgtllsnpaiastLsd.....dfk 87 
                 +   +++++++++ +  n+ d   ++kk++++++++               + +++ +++k++  s  ++q+++llg++lsn +i+ +L++        
  CCD23504.1 249 EIFATFNNIIPIIPNGFNATD--VIDKKIGIIVENLDnlikilisnlkdeqKELLEGNEKKNPFTSRQYVQIIRLLGIMLSNFKIICWLDKrkplqVML 345
                 566788888888887765555..56699999999999999999999999977777666666666999************************88777778 PP

                 THHHHHHTTTTTSTT--HHHHHHHHHHHHH--THHHHS-HHHHHHHHTTCCS--.----HHHHHHHHHHHHHHHHHSHHHHHHTHHHHHH......... CS
      Rif1_N  88 vfiidhsirsledsstpKniithllsvlsqQkFsskimtservkrllsalenieervkgksiiaerlniyrrLleqapslmlahaelWlp......... 177
                 + i++ s ++l +++++K ii+++l++l+++kFs+++++++++ r+++++++i+ ++k+ ++ +e+l ++r  +++ p+lm+ + ++Wlp         
  CCD23504.1 346 KEIYKLSEEALVNENSSKVIIISQLTFLKDEKFSTYYLNKNEILRIIDTFTKIK-DLKSTNLMNEKLLLMRCYINKFPKLMIPKISDWLPgellskivl 443
                 899999999*********************************************.******************************************** PP

                 ...........HHHHHHHHHHH......TTT-HHHH.HTTSBHHHHS-H....HHHTTS---SHHHH-TTT-BHHHHHHHHHHHHHHTT--HHHHHHHH CS
      Rif1_N 178 ...........dlfsgllssvk......direkaiq.lgleaalalgke....kevskavlelldseleegktlievlierLkkmlkekknekivpqiW 254
                            + + +ll+ +k      + ++++ + +++++ ++ ++e    k+ s avl+ l+  + +++tl+++l++++k+++  +k++k+ +++W
  CCD23504.1 444 dedmyaikithTSIAVLLDLLKkcldveEGHQEIFKyVEVKTLNESVPEgtleKFNSTAVLNDLEIDI-NSMTLGQLLRNKIKYLVLVQKDYKVGIDLW 541
                 ***********888888888888887777788999999999999999962222566788999999999.****************************** PP

                 HHHHHHHH-STTGGG........GSHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHS--TT-H.....HHHHTTHHH........HHHTSHH CS
      Rif1_N 255 svvilLlrkkrksle........sweffnewLkliqkcFnssdpevkieAniaWnrliyavnpdestskk.....llklLrqPllsqlerkkesksake 340
                  ++++Ll +++k++         + ++  +wL+l+q+cF++sd ++k+ ++++W++l+y+++++ +  ++     ll++L  Pl  +++++++ +  ++
  CCD23504.1 542 LAMVGLLFNNKKNIIhlldkdktHDKSSADWLNLVQLCFKNSDGKTKLLSLKVWRILTYCICTHVTELDSayqipLLNILKIPL--EISKTEHGN--DN 636
                 *****99998888755777888789999************************************99999889999*********..555555555..99 PP

                 HHHHHHHHHHHHHHHHHTT-T...TTHHHHHTTTTTH CS
      Rif1_N 341 lreavlsslcnllyyalrpla...sakqldlvWdevv 374
                 +r+++++ + +++y+a+  l+   s++ +++++d++v
  CCD23504.1 637 VRDGIIYYVTGIIYTAFLLLQknlSYETFQFFFDNLV 673
                 ***************9865554459********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1902 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       944  (0.0526521); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.27s 00:00:01.23 Elapsed: 00:00:00.44
# Mc/sec: 12855.10
//
Query:       CCD23505.1  [L=528]
Description: hypothetical protein NDAI_0B04700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-62  210.6   0.0    3.3e-62  210.2   0.0    1.2  1  Pkinase         Protein kinase domain
    1.8e-35  122.5   0.0    2.4e-35  122.1   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    5.5e-10   39.0   0.0    8.8e-10   38.4   0.0    1.3  1  Kinase-like     Kinase-like
    7.4e-06   25.0   0.0    1.2e-05   24.3   0.0    1.2  1  Pkinase_fungal  Fungal protein kinase
     0.0093   14.9   0.0      0.015   14.3   0.0    1.2  1  Haspin_kinase   Haspin like kinase domain
  ------ inclusion threshold ------
       0.01   14.9   0.0      0.025   13.6   0.0    1.5  2  Seadorna_VP7    Seadornavirus VP7
      0.014   14.8   0.0       0.03   13.7   0.0    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.2   0.0   1.3e-65   3.3e-62       4     264 .]      18     281 ..      15     281 .. 0.91

  Alignments for each domain:
  == domain 1  score: 210.2 bits;  conditional E-value: 1.3e-65
                 EEEEEEESSEEEEEEE.ETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   4 leklGeGsfGkVykav.eketgkivAvKkikkekakkkke..kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                   ++G+G+fG+V +a+ + + + i+AvK i     kk+    k++++E+ ++ k++ hpn++rl+++  ++ ++++v+e+++gg+l+d +e +  +++e
  CCD23505.1  18 GDTIGQGTFGCVKNAHlKIDPKVIIAVKFIHIPTCKKNGLsdKDITKEVILHSKCSkHPNVLRLIDCNISNAYMWIVMEMADGGDLFDKIEPDIGVDSE 116
                 578*********9997245677899****99998888766679************99****************************************** PP

                 HHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHH CS
     Pkinase  99 eakkiakqilegleylH.skgiiHrDlKpeNiLidekgelKitDFGlakelesssk....ltsfvgtseYlAPEvl..keneyskkvDvWslGvilyel 190
                  a+++++q++++++ylH + gi HrD+KpeNiL+d++g+lK++DFGla++++++      ++++ g++ Y+APE+l  k+  y +++D+Ws+G++l+ l
  CCD23505.1 117 VAQFYFQQLIRAISYLHdECGIAHRDIKPENILLDRNGNLKLADFGLASQFKRNDGtirvASDQRGSPAYMAPEILysKGGYYANSTDIWSIGILLFVL 215
                 *****************5567********************************98899*9****************9777788**************** PP

                 HHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 191 ltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ltg+ p++    +e   k++      + i ++ +++l  + +i+ + ++ll+k+l+ dpkkR + + l  hp++
  CCD23505.1 216 LTGEIPWELPVMEE---KNF-----ACFIQNNGNLNLGPWAKIDFSHLNLLRKMLQPDPKKRASLKILRTHPWF 281
                 ********433333...222.....2345568899**************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.0   9.2e-39   2.4e-35       2     256 ..      16     276 ..      15     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 9.2e-39
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE...STTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtl...keeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                   lg+++G+G+fG V +++lk    + +v +avK +   + +++  + +++++e+ + +k+ khpn+++l+ + +++  ++iv+e+++gGdL + ++ +
   CCD23505.1  16 VLGDTIGQGTFGCVKNAHLK---IDPKVIIAVKFIhipTCKKNGLSDKDITKEVILHSKCsKHPNVLRLIDCNISNAYMWIVMEMADGGDLFDKIEPD 110
                  57899***************...8899******993322344444599***********************************************997 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.EETTSSTSGGGGS-HHHHHHSE..EEHHHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenkvvkisDfGLardiekddey.vkkeeaklpvkWmapEslkekk..ftsksDvW 189
                      ++ +    + +q+ ++++yL+++  + Hrd+   N+Ll++n   k++DfGLa++ +++d + +++++++ +  +mapE+l +k   +  ++D+W
   CCD23505.1 111 --IGVDSEVAQFYFQQLIRAISYLHDECgIAHRDIKPENILLDRNGNLKLADFGLASQFKRNDGTiRVASDQRGSPAYMAPEILYSKGgyYANSTDIW 206
                  ..66777777778999*********875388***************************9655544499999************98876779999**** PP

                  HHHHHHHHHHTTSSGT..TTTSHHHHHHHHHHTTEES-BBTTSBHHHH..HHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 190 sfGvllwEiftlgesp..ypglkneevleklkegkrlekpekcpeely..elmkkcweedpeeRptfselv 256
                  s G+ll+ ++t ge p  +p +++++++ +++++ +l+    ++ ++   +l++k ++ dp++R++++ l+
   CCD23505.1 207 SIGILLFVLLT-GEIPweLPVMEEKNFACFIQNNGNLNLGPWAKIDFShlNLLRKMLQPDPKKRASLKILR 276
                  *******9999.****4446789999999**998888776655555541177*************998765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   3.4e-13   8.8e-10     145     288 .]     118     269 ..     104     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 3.4e-13
  Kinase-like 145 arlllTlqlirlaanLqak.glvhgkftvdnllldekgglmlggft...aLvragtkvvl.seve..kgfaPpEllgsrggytrknktkmthkldaWq 235
                  a+ +   qlir + +L+++ g+ h +++++n+lld++g l+l +f+   +  r     ++ s      ++  pE+l s+ggy          ++d W 
   CCD23505.1 118 AQFYF-QQLIRAISYLHDEcGIAHRDIKPENILLDRNGNLKLADFGlasQFKRNDGTIRVaSDQRgsPAYMAPEILYSKGGYYA-------NSTDIWS 207
                  55555.69*********8669************************722244454444455254446789************654.......588**** PP

  Kinase-like 236 lGlviyriwclklPltlateeakeew..........kfklckkipekvkaLlkkfLqlsqedR 288
                  +G+  + +   ++P +l+  e k+ +          ++ + +ki      Ll+k+Lq++ ++R
   CCD23505.1 208 IGILLFVLLTGEIPWELPVMEEKN-FacfiqnngnlNLGPWAKIDFSHLNLLRKMLQPDPKKR 269
                  ***************998766443.33467777776677777777777777777777776666 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.6e-09   1.2e-05     313     389 ..     123     195 ..     119     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.6e-09
  Pkinase_fungal 313 rDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses.garertGTleFmaievlkge 389
                     ++ I++   L+ ++gi HrDi  +Nil+      ++ +  L+D+ la++ ++++ +  +a ++ G +++ma e+l  +
      CCD23505.1 123 QQLIRAISYLHDECGIAHRDIKPENILLD-----RNGNLKLADFGLASQFKRNDGTIrVASDQRGSPAYMAPEILYSK 195
                     667999999*******************9.....788899**********98665434889*************9853 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.7e-06     0.015     181     255 ..      88     165 ..      36     177 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.7e-06
  Haspin_kinase 181 eqqlflvlllkdkGtdLeev..klkswkqalsi.fwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsR 255
                    +  + +v+++ d+G+  +++   +   +++ +  f q +  ++    +    HRd++ +niL+d+n+n  l d+ l+ 
     CCD23505.1  88 NAYMWIVMEMADGGDLFDKIepDIGVDSEVAQFyFQQLIRAISYLHDECGIAHRDIKPENILLDRNGNLKLADFGLAS 165
                    44556778888888888888554544455555515578899999999***************************9874 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   9.9e-06     0.025     151     186 ..     126     160 ..     118     166 .. 0.88
   2 ?   -3.3   0.0       1.4   3.5e+03     194     211 ..     309     326 ..     296     360 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.9e-06
  Seadorna_VP7 151 lkdLmdfhsestnllhGDcnpenlmcDknGylklvD 186
                   ++++  +h ++ ++ h D++pen++ D+nG+lkl D
    CCD23505.1 126 IRAISYLH-DECGIAHRDIKPENILLDRNGNLKLAD 160
                   56777889.888999*******************99 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.4
  Seadorna_VP7 194 tvvyvnieYesltqeaev 211
                    + + n+ Ye  tq+   
    CCD23505.1 309 RISLSNETYERFTQDVSY 326
                   466778999999988533 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   1.2e-05      0.03     101     166 ..      99     161 ..      89     171 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.2e-05
         Kdo 101 gaqdLedllakwaelaeelkrallkavgrliaklhr.agvnHadlyaknillqqeeeeeaeiwliDl 166
                 +  dL d ++    ++ e+ +  ++++ r+i+ lh+  g+ H+d+ + nill+ ++    ++ l D+
  CCD23505.1  99 DGGDLFDKIEPDIGVDSEVAQFYFQQLIRAISYLHDeCGIAHRDIKPENILLDRNG----NLKLADF 161
                 44566666665333889999999************736***************998....5555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3420.14
//
Query:       CCD23506.1  [L=434]
Description: hypothetical protein NDAI_0B04710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-19   69.8   0.1    3.7e-19   68.7   0.1    1.6  1  UBX       UBX domain
  ------ inclusion threshold ------
        0.2   11.2   8.2       0.46   10.0   8.2    1.6  1  DUF5526   Family of unknown function (DUF5526)


Domain annotation for each model (and alignments):
>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.1   4.1e-23   3.7e-19       3      80 ..     216     294 ..     214     295 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 4.1e-23
                 TSSEEEEEEEETTSTEEEEEEESSSBHHHHHHHHHHHCCCCCTSEEEEETTTTEEGGCCC.CSBCCCCTTTSCEEEEEE CS
         UBX   3 aedatrlqiRlpdGsrlvrrFkksdtlesvyeyVdsklfekeepFqLltsfPrreltksd.kktLsdlgllpnstlvle 80 
                 ++++++lqi+l + s+l+++F+++dtl++v+ +Vd ++++ ++ + +++++Pr ++ +sd  ktL dl+l+p+s+l+l+
  CCD23506.1 216 HSEKCTLQIKLTNSSTLTHTFNSKDTLNDVRTWVDHNRTDGNTAYYFHRNIPRMTFNDSDeLKTLCDLELTPRSALILK 294
                 5789************************************************************************996 PP

>> DUF5526  Family of unknown function (DUF5526)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   8.2   5.1e-05      0.46      67     135 ..     127     193 ..     111     219 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 5.1e-05
     DUF5526  67 AraskssakkktssqsfqleksksedilaealkiqeseekekylqkakkrdeilqLLrkQReeRiskEl 135
                 A+++ +   kk+++++ ++ ks+ edi++   +i +++  +++  + ++r+ i+ L r  R+eR  kE 
  CCD23506.1 127 AHTHDN--DKKSNKEKEKFGKSDREDIMETSERIYHQQVLKERRLENEERERIIRLVRADRQERKAKEQ 193
                 333333..4678888888899999****999999888876666667899******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1289  (0.0718947); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3140.34
//
Query:       CCD23507.1  [L=485]
Description: hypothetical protein NDAI_0B04720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.4e-112  373.3  20.3   6.8e-112  372.7  20.3    1.3  1  HSM3_N    DNA mismatch repair protein HSM3, N terminal domain
      1e-85  285.8   0.5    2.1e-85  284.8   0.5    1.6  1  HSM3_C    DNA mismatch repair protein HSM3, C terminal domain


Domain annotation for each model (and alignments):
>> HSM3_N  DNA mismatch repair protein HSM3, N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  372.7  20.3  7.6e-116  6.8e-112       1     238 [.      12     249 ..      12     250 .. 0.99

  Alignments for each domain:
  == domain 1  score: 372.7 bits;  conditional E-value: 7.6e-116
      HSM3_N   1 ieelleelntaleadelpeeinellekcslnlstvaklkedakrllanikrllvenksedkldydlllelldklvkvssfedvlevysvddlvkalkse 99 
                 i+++leelntale++++p +in+l+e+cslnlst+++lk+d+krllanikr+l++++se+ ldy+lllell++l++vssf+dvlev+s++dl++al+s+
  CCD23507.1  12 ITPMLEELNTALESAIIPGDINKLIERCSLNLSTSIILKGDSKRLLANIKRMLLSDESENILDYELLLELLQSLIDVSSFDDVLEVFSTNDLLDALNSG 110
                 689************************************************************************************************ PP

      HSM3_N 100 idslvvaackvieksyPkglfatseiidilldlffdekveisvinsiekaleklssdelirrrilvnnlPlllkvkkkfetisfarliellkiefefie 198
                 i+s+v+aack+i+ksyPkg+fa+s iidi+l++ff+ ++eis+in+ie+++++lssdelirrrilvnn+Pll+k+k++fe++sf+rliellkie+efi+
  CCD23507.1 111 ITSIVRAACKIISKSYPKGIFASSLIIDIVLEIFFNLDTEISIINDIETLFKNLSSDELIRRRILVNNHPLLKKIKRDFEPKSFTRLIELLKIEYEFIT 209
                 *************************************************************************************************** PP

      HSM3_N 199 esefkeklfvitkeeilksvevdillfieivnyytkllee 238
                 +sef+e+lfvit +ei+ks+e+di++fi+i+nyyt+l+++
  CCD23507.1 210 PSEFDESLFVITINEIRKSIEKDIFIFISITNYYTSLVAN 249
                 *************************************987 PP

>> HSM3_C  DNA mismatch repair protein HSM3, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.8   0.5   2.4e-89   2.1e-85       1     177 []     309     485 .]     309     485 .] 0.99

  Alignments for each domain:
  == domain 1  score: 284.8 bits;  conditional E-value: 2.4e-89
      HSM3_C   1 slfksldkdylkissetkyikeflslvnPkylvkyhktlvkelalvspsklgilrnliadeecfnlikdkltaeailalPyleqmvlleklsqyeysvk 99 
                 +lf+++dk+y+k+s++t yi ef+++vnPkyl+k+h+tlv+++alv+ps+lgilrn++ad++cf li++k+t+ +ilalPy+eqmvllek++q++y+v+
  CCD23507.1 309 ELFHTIDKAYVKLSHDTPYILEFMAFVNPKYLFKFHQTLVHDFALVTPSRLGILRNIMADPDCFLLIEPKITSGNILALPYMEQMVLLEKMTQFKYGVE 407
                 69************************************************************************************************* PP

      HSM3_C 100 ylleelPkvmsnlienengevieletvelrrealenllkfdeeklsvWyePlkkeyskivnGknsskeaetklassyl 177
                 yl+++lP+vm+nl++n ngev+e etvelrrea+e+ll+f+e+ l+vWy+Pl+k+y +ivnG+n++k++e+klas+yl
  CCD23507.1 408 YLIQFLPQVMANLTQNLNGEVTEPETVELRREAVEHLLQFGEPVLNVWYNPLRKLYGRIVNGDNYEKKVEPKLASAYL 485
                 *****************************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3331.24
//
Query:       CCD23508.1  [L=432]
Description: hypothetical protein NDAI_0B04730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-21   76.7   0.6      3e-21   75.9   0.1    1.6  2  Methyltransf_16  Lysine methyltransferase
    7.8e-06   25.8   0.0    1.4e-05   25.0   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    7.8e-06   25.8   0.0    1.6e-05   24.7   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
    0.00044   19.8   0.0    0.00077   19.0   0.0    1.3  1  MTS              Methyltransferase small domain
     0.0066   17.1   0.0      0.011   16.4   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.053   13.5   1.6        4.1    7.5   0.0    2.8  2  VGPC1_C          C-terminal membrane-localisation domain of i
      0.054   14.2   0.0       0.13   13.0   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
       0.11   13.2   0.0        0.2   12.3   0.0    1.5  1  Methyltransf_11  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1         2   4.5e+03      91     114 ..     116     139 ..     101     146 .. 0.68
   2 !   75.9   0.1   1.3e-24     3e-21      14     153 ..     229     374 ..     218     396 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2
  Methyltransf_16  91 lnknalkskvkvevLdWgeeleed 114
                        ++ ++s+   + L+W ++l ++
       CCD23508.1 116 CKEKEISSELLSSLLTWYTDLWPN 139
                      334477888888999999888655 PP

  == domain 2  score: 75.9 bits;  conditional E-value: 1.3e-24
  Methyltransf_16  14 gesigrkvWdaavvlvkylekklake.lganelsklsvlELGsGtGlvGlavael......lpeakviltDleellellkknielnknalkskv 100
                       ++ g k W ++++l++ l + l+ +  ++++ s ++vlELG+GtGlvG+a a +       +++++++tDl++++ +l+kn++ n+  l++ v
       CCD23508.1 229 ADNLGWKTWGSSLILSQELVNDLETNkNNKKSKSIRRVLELGAGTGLVGIAWACKwrqlygNESIEMFVTDLPDIVTNLRKNVQNND--LDDFV 320
                      45789999******99999888766645666677789****************9999986448999*******************66..***** PP

  Methyltransf_16 101 kvevLdWgeeleedll...ekeevDlilaaDcvYledslelLvkvLkellkkeskv 153
                      +++vLdW ++  ed++   + e++D il+aD +Y  +  e  v+++ + l+ ++ +
       CCD23508.1 321 VADVLDWTNP--EDFIkkySDEKFDTILIADPIYSPNHPEWVVNMICKFLAINGRC 374
                      *******863..34441115678*************99999999999988888764 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   6.3e-09   1.4e-05      16     135 ..     251     395 ..     242     411 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 6.3e-09
  Methyltransf_23  16 llpklragg......rvLdiGcGtGil........levlrengfsvtgvDlspeaveiae...kakkaqkdqfdeqeaaepqg........kfd 84 
                      l ++++  +      rvL++G+GtG +         +++  +  ++ + Dl ++  ++++   + +   ++ +d  ++++p++        kfd
       CCD23508.1 251 LETNKNN-KksksirRVLELGAGTGLVgiawackwRQLYGNESIEMFVTDLPDIVTNLRKnvqNNDLDDFVVADVLDWTNPEDfikkysdeKFD 343
                      4433222.1346888**********866666633333334445699999999988888874444444444455555777766666666667*** PP

  Methyltransf_23  85 lIvlrevlehvpdppellrqiatllkpgGylllseplaslkedrl.lldwly 135
                      +I   + +++  +p+ ++++i + l+ +G++ l+ pl+  +++++  l++l+
       CCD23508.1 344 TILIADPIYSPNHPEWVVNMICKFLAINGRCHLEIPLRAKYALEReKLSNLL 395
                      ************************************9988644441444444 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   7.1e-09   1.6e-05       6     112 ..     265     379 ..     260     423 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 7.1e-09
  Methyltransf_31   6 rvlDlGCGtGeltfelae.....elgpkaevvGiDiseeaielArenaqklgld.nveFeqgdiee.lekl..ledekfDlilsnevlnaladp 90 
                      rvl+lG+GtG  ++++a        ++ +e++  D  ++ ++  r+n q++ ld  v   + d+++  +    ++dekfD il  ++++  ++p
       CCD23508.1 265 RVLELGAGTGLVGIAWACkwrqlYGNESIEMFVTDL-PDIVTNLRKNVQNNDLDdFVVADVLDWTNpEDFIkkYSDEKFDTILIADPIYSPNHP 357
                      89***************9888665566888888886.99***************8888889999874443224777****************** PP

  Methyltransf_31  91 dkileeiervlkpggilliedp 112
                      + + + i++ l  +g++ +e p
       CCD23508.1 358 EWVVNMICKFLAINGRCHLEIP 379
                      ****************987655 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.5e-07   0.00077      26     123 ..     250     365 ..     240     395 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.5e-07
                 HCHCC.......TCSEEEEET-TTSHHHHHHHHHT....TC.EEEEEESBH.HHHHHHHHHHHHTTGC........EEEEE-STTTTSTTS-EEEEEE- CS
         MTS  26 tlpke.......lsgkvlDlGcGaGvlgaalakes....peaevtlvdvda.rAlesakenleankle........vevvasdvleeveekkfdlivsN 104
                  l+++         ++vl lG+G+G++g+a a ++     + +++++  d    ++  ++n+++n+l+          +  +d +++ +++kfd+i+  
  CCD23508.1 250 DLETNknnkkskSIRRVLELGAGTGLVGIAWACKWrqlyGNESIEMFVTDLpDIVTNLRKNVQNNDLDdfvvadvlDWTNPEDFIKKYSDEKFDTILIA 348
                 5555433332223345************998866511115567999888872567889**********988743322234689999************9 PP

                 --STTTCHCHHHHHHHHHH CS
         MTS 105 PPfhagkatelavaeelia 123
                  P+ + ++   + + ++i+
  CCD23508.1 349 DPIYSPNH--PEWVVNMIC 365
                 99998877..555666655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.1e-06     0.011       1      88 [.     266     363 ..     266     372 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 5.1e-06
                      EEEET-TTSHHHHHHHCTS....T..SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBS........SSTTTEEEEEEESTGGGSSHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl....g..kakvtgvDiseemleaareraeeeglnvefvqgdaedlp........fedgsfDlvvssgalhhlsde 80 
                      vL+lG+GtG + +a+a ++    g  + ++  +D+ ++ + + r+++++++   +fv++d+ d+         + d++fD ++++  +   +  
       CCD23508.1 266 VLELGAGTGLVGIAWACKWrqlyGneSIEMFVTDL-PDIVTNLRKNVQNND-LDDFVVADVLDWTnpedfikkYSDEKFDTILIADPIYSPN-- 355
                      9********99999887764444435667777776.7889999****8776.4589999998875445544446999*****9975554433.. PP

                      HHHHHHHH CS
  Methyltransf_25  81 dlekalke 88 
                      + e +++ 
       CCD23508.1 356 HPEWVVNM 363
                      33334555 PP

>> VGPC1_C  C-terminal membrane-localisation domain of ion-channel, VCN1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3     0.023        52      21      38 ..     113     130 ..     107     132 .. 0.88
   2 ?    7.5   0.0    0.0018       4.1      30      44 ..     387     401 ..     382     405 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.023
     VGPC1_C  21 efscsEKeqeierLnkLl 38 
                 e  c EKe  +e L +Ll
  CCD23508.1 113 EIICKEKEISSELLSSLL 130
                 667***********9998 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0018
     VGPC1_C  30 eierLnkLlkqhGlL 44 
                 e e+L +Ll qhGl+
  CCD23508.1 387 EREKLSNLLEQHGLV 401
                 6699**********8 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   5.9e-05      0.13       1      98 [.     267     373 ..     267     374 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.9e-05
  Methyltransf_12   1 LeiGcGtGsllrallekl......pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg......ssfDlvvasnvlhhlkdi 82 
                      Le+G+GtG +  a++ k       + ie  ++D+   +  + ++  + ++ +++ + ++ +    ++         ++fD++++++ +   +++
       CCD23508.1 267 LELGAGTGLVGIAWACKWrqlygnESIEMFVTDLPDIVT-NLRKNVQNNDLDDFVVADVLDWTNPED--FikkysdEKFDTILIADPIYSPNHP 357
                      8*************9998888999999999999877777.555555555555544444444433333..2558889****************** PP

  Methyltransf_12  83 revldnirklLkpgGr 98 
                      + v++ i k L+ +Gr
       CCD23508.1 358 EWVVNMICKFLAINGR 373
                      ************9998 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     9e-05       0.2       1      94 [.     267     374 ..     267     376 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9e-05
                      EEET-TTSHHHHHHHHTTSEEEEEES-HHHH.......HHHHHHCCHHT-EEEETTEECCC.......T.SS-TT-EEEEEEES-CCC-CCHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrgarvvgvDlskeml.......klakekaseeglkvefvvadaek.......l.pfednsfDlvvssevlhhvedpek 79 
                      L++G+GtG++  a+a + ++++g +  + ++       +  ++++++++l  +fvvad+ +       + ++ d++fD +++   +   + pe 
       CCD23508.1 267 LELGAGTGLVGIAWACKWRQLYGNESIEMFVtdlpdivTNLRKNVQNNDL-DDFVVADVLDwtnpedfIkKYSDEKFDTILIADPIYSPNHPEW 359
                      899*******9999944455555554444443333333677888888887.68999999865555556447*************9999999999 PP

                      HHHHHHHHEEEEEEE CS
  Methyltransf_11  80 alkeiaRvLkpgGll 94 
                      +++ i + L  +G++
       CCD23508.1 360 VVNMICKFLAINGRC 374
                      999999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3336.93
//
Query:       CCD23509.1  [L=561]
Description: hypothetical protein NDAI_0B04750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-29  103.1   1.4    1.6e-29  103.1   1.4    2.8  2  HbrB      HbrB-like


Domain annotation for each model (and alignments):
>> HbrB  HbrB-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.5      0.21   3.7e+03     111     119 ..     198     206 ..     158     234 .. 0.52
   2 !  103.1   1.4   8.7e-34   1.6e-29       2     168 ..     345     498 ..     344     499 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.21
        HbrB 111 ssllaeske 119
                 ++++ +++e
  CCD23509.1 198 KKAIGNTNE 206
                 122222222 PP

  == domain 2  score: 103.1 bits;  conditional E-value: 8.7e-34
        HbrB   2 laddaWqllcvrvlplFnged...lrvpiEdlnklvelhiqlvier.a.kalsllvedleeLlstglltLenkLsq.....leeerllkrLveiWkffy 90 
                 la+++W+++++ v++lF+g++   l++++Ed+++++e+++ l++e  + ++++ l++++eeL++++l+++en++++       +++ lkrL  iW++fy
  CCD23509.1 345 LAGNIWSIYRNVVVELFKGRKlwhLEAKVEDIDRMLEFYLVLRTEIkNpSSHTRLLSEIEELITSSLFIFENQIVFnynneSAMNSPLKRLGIIWRIFY 443
                 5789****************9999*****************999996448****************************999999*************** PP

        HbrB  91 tqvlpyleavfLPLetefklssllaeskekrsaspasqasssssstssssksserldvrrllLiaFRDsvvlPiyerl 168
                 ++v++++ a++LPLe++f+     +++k                     + ss+  ++++llL+ FRDs+vlP+y+++
  CCD23509.1 444 EEVFYDVTACLLPLEKSFE-----RNPKY------------------WLDISSDIQSINHLLLKGFRDSIVLPYYQNF 498
                 *******************.....22222..................2344556678*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       895  (0.0499191); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4485.44
//
Query:       CCD23510.1  [L=136]
Description: hypothetical protein NDAI_0B04760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-18   64.5   4.7    3.3e-17   62.7   4.7    2.1  1  DUF1674   Protein of unknown function (DUF1674)


Domain annotation for each model (and alignments):
>> DUF1674  Protein of unknown function (DUF1674)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   4.7   1.8e-21   3.3e-17      13      50 .]      97     136 .]      38     136 .] 0.85

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 1.8e-21
     DUF1674  13 a...pefegdvnpktgEigGpkgpEPtRygDWeykGrvsDF 50 
                 +   pefegdvnpktgE gGp +++P++ygD++++Grv+DF
  CCD23510.1  97 SktlPEFEGDVNPKTGEKGGP-KQDPLKYGDYSFNGRVTDF 136
                 04449****************.******************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1080.35
//
Query:       CCD23511.1  [L=113]
Description: hypothetical protein NDAI_0B04770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-23   81.8   5.7    4.9e-18   65.8   0.2    2.1  2  Ribosomal_L37  Mitochondrial ribosomal protein L37


Domain annotation for each model (and alignments):
>> Ribosomal_L37  Mitochondrial ribosomal protein L37
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.2   2.8e-22   4.9e-18       2      44 ..      31      73 ..      30      91 .. 0.82
   2 !   19.4   1.1   6.3e-08    0.0011      94     120 .]      86     112 ..      74     112 .. 0.86

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 2.8e-22
  Ribosomal_L37  2 skSsvpaGtklkglnilKnkadpvaleDseYPeWLWtlldsa.k 44
                    kSs+ aGt+l+ lni K++++p+aleD+eYPeWLWt+ld + +
     CCD23511.1 31 IKSSCLAGTPLN-LNIKKTGKEPIALEDKEYPEWLWTVLDTKtA 73
                   69**********.***************************4322 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 6.3e-08
  Ribosomal_L37  94 aeareelkkalrkkrrakIkesNflka 120
                    +e   ++k++lr + r+kIk++Nfl++
     CCD23511.1  86 EESLLARKRQLRVETRKKIKQNNFLSQ 112
                    5667789******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                         9  (0.00050198); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.20s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 930.28
//
Query:       CCD23512.1  [L=440]
Description: hypothetical protein NDAI_0B04780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-34  117.8  10.9      3e-33  114.1   3.2    2.8  3  zf-C2H2_2     C2H2 type zinc-finger (2 copies)
     0.0026   18.0   2.2       0.58   10.5   0.3    3.0  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
       0.19   10.5  12.3       0.37    9.5  12.3    1.5  1  Presenilin    Presenilin
        3.3    6.3   9.8        4.7    5.8   9.8    1.2  1  Ndc1_Nup      Nucleoporin protein Ndc1-Nup
        3.9    8.6   8.3          7    7.8   0.1    3.7  3  zf-C2H2_4     C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1   0.00092       3.3      51      77 ..       5      31 ..       1      43 [. 0.86
   2 ?   -3.4   0.1       3.5   1.3e+04      33      50 ..      88     105 ..      78     113 .. 0.67
   3 !  114.1   3.2   8.5e-37     3e-33       1      98 [.     183     281 ..     182     284 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00092
   zf-C2H2_2 51 leClyCekefkslealreHmkkkgHck 77
                ++C  C  ef s  + r+Hmk+  H+ 
  CCD23512.1  5 YTCNSCVMEFASSIEQRQHMKSDWHRY 31
                57*********999*********9986 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.5
   zf-C2H2_2  33 lvdleglleylrekieek 50 
                 l+ +++lle  re++ ++
  CCD23512.1  88 LQRKKELLELARENMLKN 105
                 456777777777766554 PP

  == domain 3  score: 114.1 bits;  conditional E-value: 8.5e-37
   zf-C2H2_2   1 eClfcekkske.veellehmskkhgffipereylvdleglleylrekieekleClyCekefkslealreHmkkkgHckineeeeeekkeiekfydflsk 98 
                 +Clfc+k+  + +e++l+hm+k+hgf+ipe++yl d+egl++yl+eki  ++ C++C++++ks+ea+r+Hm  k+Hcki++e+e+ek ei++fy+f+s+
  CCD23512.1 183 QCLFCTKRIFTdFETNLDHMFKSHGFYIPEQKYLEDKEGLVKYLSEKIGLGNVCIVCNYQGKSIEAVRAHMLAKRHCKIPYENENEKLEISEFYNFTST 281
                 5******95555************************************************************************************543 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.3   0.00016      0.58       2      27 .]       5      30 ..       4      30 .. 0.93
   2 !    6.0   0.1    0.0042        15       4      25 ..     236     257 ..     234     259 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
                 CBBTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHlkSKkHK 27
                 + C  C   F s+   ++H+kS +H+
   CCD23512.1  5 YTCNSCVMEFASSIEQRQHMKSDWHR 30
                 67999999*****************7 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0042
                  BTTTTBBBSSHHHHHCCTTSHH CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHlkSKk 25 
                  C++C+ + ks +a ++H+  K+
   CCD23512.1 236 CIVCNYQGKSIEAVRAHMLAKR 257
                  *****************96555 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5  12.3    0.0001      0.37     230     317 ..      61     151 ..      34     235 .. 0.43

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0001
  Presenilin 230 aevaeseeeeeaekkkeeasesskeeeseeesseksaqsse..................seeeseeesseaessaeesseekeseessesseeeeeeee 310
                 ae+++++e+++++ +k+e+++++ke               +                  + +++++++++ + +++e+    ++++++e+++e+++e++
  CCD23512.1  61 AETTKNNEDSKKQLTKKEIRRREKE---------------AllqrkkellelarenmlkNMQQQQQQEQPITPQQQEEIPLVSEKQEQEQNQEQNQEQK 144
                 1111111111111111111111111...............01111222333444344432222222222222222222222222222222222222222 PP

  Presenilin 311 eeeeses 317
                 ++ e e+
  CCD23512.1 145 SQVEAEQ 151
                 2222111 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.8    0.0013       4.7     347     473 ..      49     166 ..       6     227 .. 0.52

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0013
    Ndc1_Nup 347 tqrinergqpapkaapskapknkasapvkelprlsksplkkkddeifgnsltaeaspkssssskegvekalsslakspgqs.psptarls......... 435
                 ++++n+            a+++++++++ ++++l+k++ +         ++++ea  +++++ +e  ++ + +  ++++q+ ++ t++++         
  CCD23512.1  49 NTKVNAANT--------AATAETTKNNEDSKKQLTKKEIR---------RREKEALLQRKKELLELARENMLKNMQQQQQQeQPITPQQQeeiplvsek 130
                 333333222........11222222233333333322222.........23444444444444444444444444444433222222222333332221 PP

    Ndc1_Nup 436 ..prarkllekaksrllskeqkealsestikkk.vekelaq 473
                   +++ ++ +++++ ++++eqk+  +e+  +++ +     +
  CCD23512.1 131 qeQEQNQEQNQEQKSQVEAEQKQDNEEDLTEEQlA-----E 166
                 11333333333333333344443333333333331.....2 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.1    0.0019         7       1      22 [.       5      26 ..       5      28 .. 0.90
   2 ?    2.2   0.8      0.13   4.5e+02       2      24 .]     183     206 ..     183     206 .. 0.77
   3 ?    1.2   0.1      0.25   8.9e+02       3      22 ..     236     255 ..     234     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0019
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlkt 22
                ++C  C   F s+ + ++H+k+
  CCD23512.1  5 YTCNSCVMEFASSIEQRQHMKS 26
                89*********8888799**97 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.13
   zf-C2H2_4   2 kCpiC.gksFsskkaLlrHlkthH 24 
                 +C +C ++ F++ ++ l+H+ + H
  CCD23512.1 183 QCLFCtKRIFTDFETNLDHMFKSH 206
                 699**8888887777567888777 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.25
   zf-C2H2_4   3 CpiCgksFsskkaLlrHlkt 22 
                 C +C+   +s +a++ H+++
  CCD23512.1 236 CIVCNYQGKSIEAVRAHMLA 255
                 88895555577779999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3549  (0.197947); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                       161  (0.00897987); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.48
# Mc/sec: 2769.80
//
Query:       CCD23513.1  [L=327]
Description: hypothetical protein NDAI_0B04790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-18   67.3   0.0    3.9e-10   39.5   0.0    2.1  2  adh_short        short chain dehydrogenase
    1.3e-10   41.5   0.0    2.9e-10   40.4   0.0    1.5  1  KR               KR domain
     0.0022   17.2   0.1     0.0033   16.6   0.1    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
     0.0026   17.3   0.0     0.0063   16.1   0.0    1.5  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.2e-09   5.2e-06       1      47 [.       8      56 ..       8      76 .. 0.84
   2 !   39.5   0.0   8.6e-14   3.9e-10      45     185 ..      77     212 ..      62     221 .. 0.92

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.2e-09
                SEEEEESTTSHHHHHHHHHHHHT..T-EEEEEESCHHHHHHHHHHHHHT CS
   adh_short  1 kvvlvtGassGIGraiakelake..Gakvvvvdrseekleevakelkee 47
                ++vl+tG+s+G+G ++a+++ ke  + k+++v+rse+kl++++ ++ + 
  CCD23513.1  8 QIVLITGGSQGLGTQFARKYFKEtkNTKIIIVSRSESKLQTAIRSITSS 56
                58******************98633778999***********9999876 PP

  == domain 2  score: 39.5 bits;  conditional E-value: 8.6e-14
                 HHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB- CS
   adh_short  45 keegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpv 143
                 ++ ++++l+ ++D++d+++v+al++   ++  +   ++ +AG + ++ f++l+++e e  +++N+   + l++ +++    q + + ++ sSv+++ p+
  CCD23513.1  77 NA-NKRLLYSPCDLSDYNSVSALLDILLAQDLSPTQIYLCAGGSIPKLFKDLTSKELEMGVQMNYLTSLYLSHKIAQL---QLQSHLIFFSSVTAFFPF 171
                 33.67899*****************99988877888899*************************************99...7899************** PP

                 TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSH CS
   adh_short 144 agvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTd 185
                 +g++ Y+  K  +++l++ l++el  t+ r+++v+PG ++++
  CCD23513.1 172 IGYSQYAPLKVSMKSLVSILRQELLGTN-RISCVYPGNFQSE 212
                 **************************96.9*******99876 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   6.4e-14   2.9e-10       3     166 ..      10     194 ..       8     203 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 6.4e-14
                 EEEETTTSHHHHHHHHHHHHHH.S-EEEEE-SS...................--HHHHH...HHHHHHHTT-.............EEEE----TT-HHH CS
          KR   3 ylitGGlGgLGlelarwlaekg.arhlvllsRsa.................aadedska...liaelealga.............evevvaaDvsdkda 67 
                 +litGG  gLG+++ar   ++  +++++++sRs+                 +          +                      +  + ++D+sd ++
  CCD23513.1  10 VLITGGSQGLGTQFARKYFKETkNTKIIIVSRSEsklqtairsitsssleeN------IenyN--------LsnyssgkkvnankRLLYSPCDLSDYNS 94 
                 79***************99988799********8777777666554433221......02221........1112223333445588899********* PP

                 HHHHHHHHHHHSS---EEEE---------TTT--HHHHHHHHTTTTHHHHHHHHHTTTS--S.EEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHHHHH CS
          KR  68 vealleeikaeeppikGvihaAgvlrdklleemtaedleqvlapKvkGawnLhelledesld.ffvlfSSiagllgsagqanYaaaNaflDalaeyrrs 165
                 v+all+ + a++ + + ++ +Ag +  kl++++t+++le  ++     +  L + +++ +l  ++++fSS+ +++   g ++Ya     + +l++  r+
  CCD23513.1  95 VSALLDILLAQDLSPTQIYLCAGGSIPKLFKDLTSKELEMGVQMNYLTSLYLSHKIAQLQLQsHLIFFSSVTAFFPFIGYSQYAPLKVSMKSLVSILRQ 193
                 ***********988899***********************************9999997775389******************9988888888777666 PP

                 H CS
          KR 166 q 166
                 +
  CCD23513.1 194 E 194
                 5 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   7.4e-07    0.0033       1      51 [.      10      61 ..      10      81 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 7.4e-07
                     EEEETTTSHHHHHHHHHHHHH.B-SEEEEEES-HHHHHHHHHH......-TT CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkk.kpkkiillerdElklyeiekeleeelkkkk 51
                     vl+tG++  +G ++ r+  k+ k +kii+++r+E kl++  ++++++  +++
       CCD23513.1 10 VLITGGSQGLGTQFARKYFKEtKNTKIIIVSRSESKLQTAIRSITSSSLEEN 61
                     89***************99987999***********9876665444443334 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.5   2.3e+03       4      39 ..      17      55 ..      14      76 .. 0.58
   2 !   16.1   0.0   1.4e-06    0.0063      45     173 ..      84     208 ..      70     227 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.5
                  TSHHHHHHHHHHHT..T-EEEEEESSGGH.HHHHHHHHH CS
  adh_short_C2  4 sgIGraiAkalaee..Gaevvltdlneea.kkrveelae 39
                  +g+G + A+++ +e    +++++ ++e++ + +++++++
    CCD23513.1 17 QGLGTQFARKYFKEtkNTKIIIVSRSESKlQTAIRSITS 55
                  677777777765541145566666666664555554443 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.4e-06
                   EEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSCCEEEEEEEGGGTSBSTTTTHH CS
  adh_short_C2  45 vlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeggsivnlssvgaervvpnynay 141
                   + +cD +d ++v al + + ++  +   +  +ag + +  + f +++ +e++  +++n    ++l++ +++ ++ ++ ++  ssv a   + +y+ y
    CCD23513.1  84 YSPCDLSDYNSVSALLDILLAQDLSPTQIYLCAGGSIP--KLFKDLTSKELEMGVQMNYLTSLYLSHKIAQ-LQLQSHLIFFSSVTAFFPFIGYSQY 177
                   379***************99999888888888998888..8*****************9988888888776.566799******************* PP

                   HHHHHHHHHHHHHHHHHHGGGTEEEEEEEE-- CS
  adh_short_C2 142 gaaKaalealtrylAvelgpkgiRvNavspgp 173
                   +  K ++++l+  l  el     R+ +v pg 
    CCD23513.1 178 APLKVSMKSLVSILRQELLG-TNRISCVYPGN 208
                   **************999998.66888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2356.77
//
Query:       CCD23514.1  [L=89]
Description: hypothetical protein NDAI_0B04800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.12   12.8   0.0       0.17   12.3   0.0    1.2  1  Cyt_b-c1_8      Cytochrome b-c1 complex subunit 8
        0.2   11.7   0.5       0.26   11.4   0.3    1.5  2  Coiled-coil_56  Coiled-coil domain-containing protein 56


Domain annotation for each model (and alignments):
>> Cyt_b-c1_8  Cytochrome b-c1 complex subunit 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.9e-05      0.17      35      66 ..      25      56 ..      11      58 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
  Cyt_b-c1_8 35 akkvkenwvsavlllvplvGtygYaenykeqe 66
                + ++k+n +++ +l+++ vG+y Y+  + +++
  CCD23514.1 25 KPFFKGNMIGLGILGALSVGIYFYTYSFLHKD 56
                3479**********************999985 PP

>> Coiled-coil_56  Coiled-coil domain-containing protein 56
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   2.9e-05      0.26      51      75 ..      29      54 ..       3      76 .. 0.74
   2 ?   -2.1   0.0      0.46   4.1e+03      37      47 ..      71      81 ..      66      87 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.9e-05
  Coiled-coil_56 51 rnlltGlai.Gglvlgiygytfysvk 75
                    +  + Gl+i G+l +giy yt+  ++
      CCD23514.1 29 KGNMIGLGIlGALSVGIYFYTYSFLH 54
                    45688998559********9975443 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.46
  Coiled-coil_56 37 elaqlqkklqk 47
                    el+ql+++ + 
      CCD23514.1 71 ELEQLKREFEL 81
                    44455553333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 703.38
//
Query:       CCD23515.1  [L=261]
Description: hypothetical protein NDAI_0B04810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.6e-28   96.9   0.0    2.2e-27   95.8   0.0    1.6  2  Ribosomal_L17  Ribosomal protein L17
    2.4e-21   76.1   3.5    4.9e-21   75.1   3.5    1.5  1  Mrpl_C         54S ribosomal protein L8 C-terminal domain
      0.007   16.2   0.7        4.1    7.2   0.0    2.4  2  YqgF           Holliday-junction resolvase-like of SPT6


Domain annotation for each model (and alignments):
>> Ribosomal_L17  Ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   3.6e-31   2.2e-27       1      94 []      19     129 ..      19     129 .. 0.82
   2 ?   -2.5   0.0       1.7     1e+04      27      27 ..     218     218 ..     186     249 .. 0.61

  Alignments for each domain:
  == domain 1  score: 95.8 bits;  conditional E-value: 3.6e-31
                    HHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHH-SHHHHHHH.HHHS-................HHHHHHHTHHHHTSS--S--EEEEEEE CS
  Ribosomal_L17   1 LlrnlvtsLleherIetTlakAkelrklaeklitlakkgelaarrka.layla................lvkkLfeelapryadrngGYtRilklg 79 
                    L++nlvt+L++h++I +T++k+ke+ +la++lit++kk     +++   + l+                l++kLf+++ p +++rngGYtR+lkl+
     CCD23515.1  19 LFKNLVTQLFQHGTIISTHEKCKEASRLADRLITMGKKIASDDQNTTkSSSLYlphiqsklflsgdnskLISKLFNDIIPVFKNRNGGYTRVLKLE 114
                    79***********************************732222211101112133445666677788889************************** PP

                    E-TTTH-EEEEEEE- CS
  Ribosomal_L17  80 prrgDaaemailelV 94 
                    +r gD+a+++ilelV
     CCD23515.1 115 SRLGDRADQSILELV 129
                    **************8 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.7
                    H CS
  Ribosomal_L17  27 k 27 
                    k
     CCD23515.1 218 K 218
                    2 PP

>> Mrpl_C  54S ribosomal protein L8 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   3.5   8.2e-25   4.9e-21       6     111 .]     139     251 ..     133     251 .. 0.80

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 8.2e-25
      Mrpl_C   6 edgnlqrGnlKlWLlvkttladeskakayaplTlqnLkKmlkfkskeqllkeilavrkflkeeqele..wdeeeekeavkalldqv......akktlpk 96 
                 ++  l++Gn+KlWLl+ ++++ ++  ++ +++T +nL K+ +fk+ke ++++il++ kflk +++ +  w+e++e + v+++++++        kt+  
  CCD23515.1 139 TEMGLNKGNMKLWLLINNIVKSNHL-NDVKDITWKNLYKIGQFKDKETFSNDILQITKFLKLNENNTndWNESKEIDNVNKIIEKIysfipnKCKTARI 236
                 45679*************9987765.6899*****************************9866543335*****************5554332233333 PP

      Mrpl_C  97 kkkkesgYkfveeRP 111
                 ++ +++gY+++++RP
  CCD23515.1 237 NEFQKKGYVIMDKRP 251
                 334449********9 PP

>> YqgF  Holliday-junction resolvase-like of SPT6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00069       4.1      20      59 ..      95     132 ..      81     170 .. 0.72
   2 !    7.0   0.2    0.0008       4.8      27      62 ..     188     223 ..     184     234 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00069
                 -EEEEEE-TTS-EEEEEEE-S-TT-SS-SHHHHHHHHHHH CS
        YqgF  20 aiicvlvngeGevvdslklaareedrekkakfvetlkkfl 59 
                  ii v+ n++G  ++ lkl  r  dr+++    e l +fl
  CCD23515.1  95 DIIPVFKNRNGGYTRVLKLESRLGDRADQSI-LE-LVDFL 132
                 6999***************999999998753.34.44444 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0008
                 -TTS-EEEEEEE-S-TT-SS-SHHHHHHHHHHHHHH CS
        YqgF  27 ngeGevvdslklaareedrekkakfvetlkkfllsk 62 
                 n+  +++++lkl +++++  ++ k +++++k+++++
  CCD23515.1 188 NDILQITKFLKLNENNTNDWNESKEIDNVNKIIEKI 223
                 6666899**************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1013  (0.0565006); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2041.98
//
Query:       CCD23516.1  [L=950]
Description: hypothetical protein NDAI_0B04820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-26   92.3   0.1    1.5e-21   76.6   0.2    3.9  3  DSPc             Dual specificity phosphatase, catalytic doma
    2.8e-05   23.8   0.0    5.8e-05   22.8   0.0    1.5  1  Y_phosphatase    Protein-tyrosine phosphatase
    0.00055   19.6   0.4     0.0038   16.9   0.2    2.3  2  CDKN3            Cyclin-dependent kinase inhibitor 3 (CDKN3)
  ------ inclusion threshold ------
      0.086   12.9   0.0       0.29   11.2   0.0    1.9  1  PTPlike_phytase  Inositol hexakisphosphate
        1.6    7.9   4.9        1.8    7.7   0.1    2.2  2  Choline_transpo  Plasma-membrane choline transporter


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.021        74      77     107 ..     586     616 ..     577     631 .. 0.84
   2 !    7.4   0.0   0.00099       3.5       1      39 [.     723     765 ..     723     783 .. 0.78
   3 !   76.6   0.2   4.1e-25   1.5e-21      33     132 ..     821     923 ..     797     924 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.021
                 EEEESSSSSHHHHHHHHHHHHHHTSCHHHHH CS
        DSPc  77 lVHCqaGisRSatliiaYlmktknlslneay 107
                 + +C+ G++ +  l +aYl+    +sl+e +
  CCD23516.1 586 FLYCKDGYTETSLLLVAYLIFLWDVSLEETL 616
                 679****************988888877765 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00099
                 EEEEECCHHC.HHHHHHHTCSEEEEESSSSSEC...ECCTTTT CS
        DSPc   1 lylgskstas.lallsklgitlvinvtkevpna...nalkkse 39 
                 lylgs  +a+ + ll+kl+i++++ v ++ +++   n  ++s+
  CCD23516.1 723 LYLGSLDHAQnPVLLKKLKINYIVSVGENLSWTdstNRNNNSH 765
                 7*********999**************9999875432223333 PP

  == domain 3  score: 76.6 bits;  conditional E-value: 4.1e-25
                 ECCTTTTSEEEEEC.CESSTTSCCGGGHHHHHHHHHHHHHTT-EEEEEESSSSSHHHHHHHHHHHHHHTSCHHHHHHHHHHHS..TT-SSTHHHHHHHH CS
        DSPc  33 nalkkseieklrip.vedehetkiskyleeavefidkakqkgkkvlVHCqaGisRSatliiaYlmktknlslneayeflkerr..paispnagfirqLl 128
                 ++++  +++ l+i  ++d+ ++ +  +l+++ efi+++ ++ +kvl+HC+ G+sRSat++ia  mk+ n+++ +ay f++ rr    i pn  f+ +Ll
  CCD23516.1 821 RIIEIDGFKILHIDnLQDNGKDPLLTQLNNILEFINECYENDGKVLIHCMVGVSRSATVCIAECMKRLNCNVLKAYLFVRMRRlnIIIQPNLMFMYELL 919
                 34567789999999999******************************************************************7556789********* PP

                 HHHH CS
        DSPc 129 eyek 132
                 ++++
  CCD23516.1 920 KWQE 923
                 9985 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.6e-08   5.8e-05     150     231 ..     846     917 ..     797     920 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.6e-08
                    SCCHHHHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHTTSTTSS-SHHHHHHHHH CS
  Y_phosphatase 150 esaksllklirkvekskeaksgpvvVhCsaGvgRtgtfvaldillqqleaeeevdvlqivkelrkqRpgmvqtleqyiflye 231
                     + +++l++i+++ ++     g v++hC  Gv+R++t++ ++++ ++l+     +vl++   +r  R +++ +   ++f+ye
     CCD23516.1 846 TQLNNILEFINECYEND----GKVLIHCMVGVSRSATVCIAECM-KRLNC----NVLKAYLFVRMRRLNIIIQP-NLMFMYE 917
                    45677777777777777....****************9988765.45544....89999999999999888664.4666666 PP

>> CDKN3  Cyclin-dependent kinase inhibitor 3 (CDKN3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.28     1e+03      82     131 ..     442     491 ..     439     497 .. 0.88
   2 !   16.9   0.2   1.1e-06    0.0038     104     151 ..     832     880 ..     823     893 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.28
                 HHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHH CS
       CDKN3  82 gelskyrvpnlldlyqqygivthhhpiadggtpdiascleimeelatclk 131
                  el  + +pn+ ++ + + i  + +   +   p+i   ++i++   t +k
  CCD23516.1 442 SELKIFNIPNFNNIDNSIPIFLYIKCTENSTLPNIDKLWNILKYGLTIVK 491
                 5889999**********************************987777666 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.1e-06
                 EE----TTS.---HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHH CS
       CDKN3 104 hhhpiadgg.tpdiascleimeelatclknyrktlihcygglgrsclva 151
                 h   + d g  p ++   +i+e +  c +n  k lihc  g+ rs+ v+
  CCD23516.1 832 HIDNLQDNGkDPLLTQLNNILEFINECYENDGKVLIHCMVGVSRSATVC 880
                 555666655168889999**************************97643 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   8.2e-05      0.29     111     154 ..     841     885 ..     837     887 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 8.2e-05
                      S---HHHHHHHHHHHHTS.-TT-EEEEE-SSSSHHHHHHHHHHHH CS
  PTPlike_phytase 111 kapeeedfdalvsilkea.pektalvfnCqmGrgRTTtamviatL 154
                      k p+ ++++ ++++++e  +++  ++++C +G+ R+ t+ ++ ++
       CCD23516.1 841 KDPLLTQLNNILEFINECyENDGKVLIHCMVGVSRSATVCIAECM 885
                      6789999***********999*****************9999888 PP

>> Choline_transpo  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1   0.00051       1.8     149     184 ..     536     571 ..     523     607 .. 0.78
   2 ?    0.9   1.8     0.058   2.1e+02     172     222 ..     848     901 ..     843     905 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00051
  Choline_transpo 149 kraltyhlGSialgSlilaivqllrlileylekklk 184
                      +++  ++ GSi+lgSl ++ +ql+  ++  +++  +
       CCD23516.1 536 YQLSFPSSGSITLGSLNISSIQLILNTCYLIYQISQ 571
                      667889*************99999888877654443 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.058
  Choline_transpo 172 lrlileylekklkkkenavakcllcclkcclwclekflkflnrn...ayimvai 222
                      l+ ile++++ ++++ +++++c++ + +    c+ +++k ln n   ay +v +
       CCD23516.1 848 LNNILEFINECYENDGKVLIHCMVGVSRSATVCIAECMKRLNCNvlkAYLFVRM 901
                      5678888888899999999***********************998888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 6683.17
//
Query:       CCD23517.1  [L=333]
Description: hypothetical protein NDAI_0B04830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0022   18.2   1.5     0.0026   18.0   0.2    1.8  2  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   1.5e-07    0.0026       2      54 ..      51     104 ..      50     109 .. 0.75
   2 ?   -2.9   0.1      0.48   8.7e+03      47      60 ..     229     242 ..     222     244 .. 0.57

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.5e-07
                    XXXHHHHHHHHHCCTTXS-B-HHHHHH.HHHHHHHHHHHHHHHHHHHHC.CTTSS CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksdpdarkiakdAkel.iaecveefieelaseAaeick.kekrK 54 
                    +LP++ +kk+ k d ++ +i++ A ++ +a ++e+fi+ +++eA+   +  + rK
     CCD23517.1  51 SLPLSKIKKLAKMD-SDYMITSNAAFMaVAFATELFIQCFSEEAVIMNQlNSHRK 104
                    79************.555566666655278899***********95443144455 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.48
                    HHCCTTSSCE-HHH CS
  CBFD_NFYB_HMF  47 ickkekrKtikaeh 60 
                    i +k+++Kt + ++
     CCD23517.1 229 IGEKSNKKTNALDD 242
                    44566666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4720  (0.263261); expected 358.6 (0.02)
Passed bias filter:                     1011  (0.0563891); expected 358.6 (0.02)
Passed Vit filter:                       325  (0.0181271); expected 17.9 (0.001)
Passed Fwd filter:                       151  (0.00842211); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.93u 0.39s 00:00:02.31 Elapsed: 00:00:00.57
# Mc/sec: 1754.30
//
Query:       CCD23518.1  [L=447]
Description: hypothetical protein NDAI_0B04840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.4e-100  337.3  23.3   1.6e-100  337.1  23.3    1.0  1  Paf1          Paf1
     0.0012   19.0   5.4     0.0012   19.0   5.4    1.9  2  RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5


Domain annotation for each model (and alignments):
>> Paf1  Paf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.1  23.3  1.8e-104  1.6e-100       1     415 [.       6     443 ..       6     447 .] 0.84

  Alignments for each domain:
  == domain 1  score: 337.1 bits;  conditional E-value: 1.8e-104
        Paf1   1 dliarirYsNnLPdppfdpKflkypfeperfveyksssLerelkheil......tdadlGmpldLinidgyldgdeesn........epvkLdpkDrkL 85 
                 ++ia+i+Y+NnLP+p ++pK+l+yp +p  +v+  s +L ++l+++++      +++dlGmpldLi+i+++l++ ++++        +++ L++kDr L
  CCD23518.1   6 EYIAKIKYQNNLPPPLLPPKLLNYPEDPIGNVD--SPQLLTSLYTKTNvtplinLNDDLGMPLDLIQIPNLLNNADTKYlygltennNNIILHQKDRVL 102
                 8***************************99999..************9999999*******************999999*******99*********** PP

        Paf1  86 LedeeaskasskrskqhskkVswLRrTEYiste.fnrfgvsatdkqetklgknlkkkeqeedlyrdresqikaiektFe.....dakkplkdlkHpskk 178
                 L+d+    ++++ +k++ +kV++LRrTEY+s++  + +++++  ++ t ++k  + +e++ed+ +++ ++++++e+ Fe     +++++l+ lkHp kk
  CCD23518.1 103 LRDP----RIDRLTKTDISKVTFLRRTEYVSSTiASHANNNG-TSTATMIKKRTR-SEEDEDELLNASQILQKVENKFEamhtaNSTDDLSGLKHPIKK 195
                 ****....*************************445555444.555555555444.599********************66444445566666****** PP

        Paf1 179 nlkaVealpllPDfelwknpyaqvkfdgdpatdskekdlkeeeqkerlsqaiirpvmeeegeefvayflpteetlekrkr...........dleeeide 266
                 +++aV++++llPD+++++++y++++++g++a d++ek+      k +ls+ai+rpv e e++e+++++++++++++ +++           +++ ++de
  CCD23518.1 196 KIHAVKTWNLLPDTAAMDQSYFTLRLVGSAALDKQEKN------KLALSTAIFRPV-ELEEDEWISMYTTDKSNSKIISQsmekniddvksNASVNDDE 287
                 ********************************999999......9**********5.55556************9999999999999998888888888 PP

        Paf1 267 eedeeyefklaReYnwkv....enkas..kgyeenlllvfrddkkkavyYneletrveLrkrRkk.......eeeeskkdklvvklrelneeelkarek 352
                 ++d++++fk++R++++k+    +  +s  + +   l++++++ +k ++yY++l+ r+eLr+rR++       +  +  +d+++v+lr+++++e++ r++
  CCD23518.1 288 DDDKTFKFKRLRDFDMKQvpnlN--PSvnQAFG-ELAIMLNN-EKGIAYYKPLRPRIELRRRRVNdvfkplvR--QYDIDQINVSLRNPTTQEANLRDR 380
                 8899**************76332..22325555.59*****9.69***********************98652..468********************* PP

        Paf1 353 resefdpleeekeeeeeeeeeeeeekseeeeekeeekeeaeeeseaeseeessdeeeeeakse 415
                 ++++fdp+++++ ++++ee++++eek+ e+ee+ +++ee+++ +e+e+ee+++ +e+++a++e
  CCD23518.1 381 LRMKFDPINFATVDDDDEEDDDHEEKEVEKEEQGDRDEEKKNVEEEEKEENTNTQETSDAEKE 443
                 ***********9999999888888844444444444444444444444444444333333333 PP

>> RNA_polI_A34  DNA-directed RNA polymerase I subunit RPA34.5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2       0.5   4.4e+03     160     165 ..     152     157 ..     127     198 .. 0.53
   2 !   19.0   5.4   1.3e-07    0.0012     100     179 ..     368     442 ..     347     447 .] 0.48

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.5
                   XXXXX. CS
  RNA_polI_A34 160 aaeede 165
                   ++eede
    CCD23518.1 152 RSEEDE 157
                   222221 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.3e-07
                   XXXXXXXXX.XXXXXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX CS
  RNA_polI_A34 100 vvpkpprpq.pkgLkmRFkPfGsgdgppgtigssseesegekekkkkpkakkkekkkkkkkaaeedeeeeapkkkkkkkkk 179
                   + p     + ++ L+m+F P+ + +     +++++ee ++++e+k+++k+++ +++++kk  +ee++ee++++++++  +k
    CCD23518.1 368 RNPTTQEANlRDRLRMKFDPINFAT-----VDDDDEE-DDDHEEKEVEKEEQGDRDEEKKNVEEEEKEENTNTQETSDAEK 442
                   4555555563566***********5.....5555555.3333333333333322222222222222123333332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1912  (0.106643); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 3022.82
//
Query:       CCD23519.1  [L=73]
Description: hypothetical protein NDAI_0B04850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       270  (0.0150594); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 557.76
//
Query:       CCD23520.1  [L=397]
Description: hypothetical protein NDAI_0B04860, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.7e-06   25.4   2.4    1.5e-05   24.6   2.4    1.3  1  zf-C2H2_10  C2H2 zinc-finger
  ------ inclusion threshold ------
       0.29   10.9   1.2        0.6    9.9   1.2    1.5  1  zf-CCHC_4   Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   2.4   1.7e-09   1.5e-05       5      21 ..     359     375 ..     356     375 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.7e-09
  zf-C2H2_10   5 tCSYChetGHtRAkCek 21 
                 +CSYCh +GHtR +C+k
  CCD23520.1 359 KCSYCHIVGHTRDQCFK 375
                 8**************86 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.2   6.7e-05       0.6      33      47 ..     359     373 ..     355     375 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 6.7e-05
   zf-CCHC_4  33 fCyiCgvlGHsdkrC 47 
                 +C+ C ++GH++++C
  CCD23520.1 359 KCSYCHIVGHTRDQC 373
                 7************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3079.58
//
Query:       CCD23521.1  [L=624]
Description: hypothetical protein NDAI_0B04870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.8e-16   59.5   5.2    7.1e-06   25.7   0.2    5.2  5  RCC1_2      Regulator of chromosome condensation (RCC1) repea
    1.2e-13   51.4   0.3     0.0004   21.0   0.3    5.5  5  RCC1        Regulator of chromosome condensation (RCC1) repea
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.022   14.7   0.0    1.5  1  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.13   7.7e+02      18      25 ..     109     116 ..     104     116 .. 0.75
   2 !   11.5   0.0   3.2e-05      0.19       1      24 [.     178     201 ..     178     207 .. 0.96
   3 !   15.8   0.0   1.5e-06    0.0092       4      23 ..     347     366 ..     344     366 .. 0.94
   4 !    3.8   0.0     0.009        54       1      13 [.     390     402 ..     390     403 .. 0.90
   5 !   25.7   0.2   1.2e-09   7.1e-06       1      27 [.     534     560 ..     534     565 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.13
      RCC1_2  18 GeVlcWGs 25 
                  ++++WG+
  CCD23521.1 109 AKLYTWGC 116
                 46*****6 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 3.2e-05
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWG 24 
                 ++++s G+y + +Lt++G+++++G
  CCD23521.1 178 IVQISGGGYSFQILTRSGKLYSTG 201
                 79*********************9 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 1.5e-06
      RCC1_2   4 vsaGdyHscaLtedGeVlcW 23 
                 + +G++H++aL++++e+++W
  CCD23521.1 347 ITSGRSHFLALDTENELYSW 366
                 779***************** PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.009
      RCC1_2   1 VksvsaGdyHsca 13 
                 + ++++G+++ c+
  CCD23521.1 390 ILKIACGWDFNCV 402
                 679*******997 PP

  == domain 5  score: 25.7 bits;  conditional E-value: 1.2e-09
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNs 27 
                 + s+s GdyH +a+te G+++ WG +s
  CCD23521.1 534 ILSLSGGDYHILAVTEQGKLYVWGVES 560
                 6799********************544 PP

>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.9e-05      0.11       3      45 ..     110     186 ..     108     187 .. 0.76
   2 ?    2.0   0.0     0.056   3.4e+02      24      50 .]     321     357 ..     309     357 .. 0.74
   3 !    7.4   0.0    0.0011       6.8      32      49 ..     385     402 ..     375     403 .. 0.79
   4 ?   -0.7   0.0      0.39   2.3e+03      36      50 .]     533     547 ..     523     547 .. 0.81
   5 !   21.0   0.3   6.6e-08    0.0004       2      50 .]     551     618 ..     550     618 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
                 EEEEEE--GGGTTSS..............SS---E......EEEEE-GGGTTS................-EEEEEEETT CS
        RCC1   3 rVysWGrndyGqLGl..............gttesv......lvPtkveglsgn................rvvkvacGdd 45 
                 ++y+WG+  + +LG               gt+         ++P +v+++s+                  +v+++ G++
  CCD23521.1 110 KLYTWGCLKHARLGYtavsnpavteddlnGTS--TrfkfgvNKPIEVPWFSNGenselvtttadddssdSIVQISGGGY 186
                 79*************88877777666665444..033555577****99998888888888888888888888888875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.056
                 EEEEE-GGGTTS..........-EEEEEEETTEEEEE CS
        RCC1  24 lvPtkveglsgn..........rvvkvacGddhtval 50 
                 + P+  +++++           +++ +++G +h +al
  CCD23521.1 321 SFPVYSNNPPSFkidkevlgsiKFIGITSGRSHFLAL 357
                 5566666666666666677777***********9986 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0011
                 GTTS-EEEEEEETTEEEE CS
        RCC1  32 lsgnrvvkvacGddhtva 49 
                  + n++ k+acG+d++++
  CCD23521.1 385 KETNPILKIACGWDFNCV 402
                 3445***********986 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.39
                 -EEEEEEETTEEEEE CS
        RCC1  36 rvvkvacGddhtval 50 
                 r+ + + Gd+h +a+
  CCD23521.1 533 RILSLSGGDYHILAV 547
                 888999*****9986 PP

  == domain 5  score: 21.0 bits;  conditional E-value: 6.6e-08
                 TEEEEEE..--GGGTTSS................SS---E.....EEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWG..rndyGqLGl................gttesv.....lvPtkveglsgnrvvkvacGddhtval 50 
                 G++y WG  +   G+LGl                g    +     l+Ptk+e+ ++   v va+G+  ++al
  CCD23521.1 551 GKLYVWGveSQYSGCLGLgrpqhivndlhigtwnG----ErnvkvLKPTKIELEKDYICVGVAAGGWQSAAL 618
                 9******988999*****55544444444433332....03344588********99**********99997 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.7e-06     0.022       3      46 ..      14      59 ..      12      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.7e-06
  F-box-like  3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrva..ldtplLWrrlv 46
                +LP++i+   + +L+ +d+ +l+l+ ++ + +   +  + LW++l+
  CCD23521.1 14 SLPPDIIQSTLPFLDREDIENLSLTNKYYHKLLnfNESQTLWHELF 59
                7********************************8755579***987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4894.75
//
Query:       CCD23522.1  [L=903]
Description: hypothetical protein NDAI_0B04880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-24   85.7   0.0    2.2e-23   83.1   0.0    1.9  2  Peptidase_M20  Peptidase family M20/M25/M40
    5.1e-12   45.7   0.0    9.8e-12   44.8   0.0    1.5  1  M20_dimer      Peptidase dimerisation domain
      4e-07   30.6   7.7        1.1   10.3   0.0    5.9  5  WD40           WD domain, G-beta repeat
    3.3e-05   24.1   0.0       0.08   13.2   0.0    2.9  2  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
     0.0017   18.0   1.6        1.2    8.8   0.3    2.7  2  DUF5484        Family of unknown function (DUF5484)


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.13   4.7e+02     122     147 ..     451     477 ..     234     504 .. 0.73
   2 !   83.1   0.0   6.1e-27   2.2e-23       2     205 ..     542     900 ..     541     902 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.13
                    E.EEESHEEECCHHHHHHHHHHHHHHH CS
                    x.xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 122 l.eggapvtlndsplvkalaeaaeelf 147
                        ++p+++n++++ k+l+e ++ ++
     CCD23522.1 451 SwVTYQPAMVNSEEMLKTLRELISYQT 477
                    235678999999********9998874 PP

  == domain 2  score: 83.1 bits;  conditional E-value: 6.1e-27
                    EEEES-BSSTTCGGGSSS.TTSEEETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHH...HHHTTTCESE CS
                    xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
  Peptidase_M20   2 lgsHlDvVpeeetdgwtt.pfslteedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakalle...gleerekvda 93 
                     ++H Dv p+++t++w+t pf lt e+G+l GrG++d+kg +++a++ +++l +e  k+  ++v+l++++EE+g+ G  ++++   ++  +ek+d+
     CCD23522.1 542 WYGHFDVIPAGDTEKWNTnPFHLTCENGYLKGRGVSDNKGPLVSAIHSVASLFQED-KLINDVVFLIEGNEEIGSPGFSEVCQkyrNII-GEKIDW 635
                    69**********************999****************************8.6679***********87777788887544333.789999 PP

                    EEEEEEESSSBTCHSTETEEEE.......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxx.......................................................................... RF
  Peptidase_M20  94 vfelhieepgileagklaigvv.......................................................................... 115
                    ++    +  + +++++ ++ +                                                                           
     CCD23522.1 636 IL---MS-NSSWVDQE-HPCLNyglrgvinaqvsiwgdepdrhsgvdggvhrepttdlinvisklqsedgriqipnfylplkelsatdyamfqeim 726
                    65...44.55555233.34444777789999999************************************************************** PP

                    ...............................................................................EEEEEEEEEESHEEEC. CS
                    ...............................................................................xxxxxxxxxxxxxxxx. RF
  Peptidase_M20 116 ...............................................................................kvevelleggapvtln. 131
                                                                                                   ++ev+ l +++++  + 
     CCD23522.1 727 keanidkkitieeliinwtkpslsittlkmsgpgnitvipksasiglsirlvpeqsveqvkkdlteyikqtfaklptknHIEVTILNEAEAWLGDp 822
                    ******************************************************************************88****99********** PP

                    CHHHHHHHHHHHHHHHTSCEEEE.EES..SSBHTHHHHTTTEEEEE.EESSGGCTTSTTTEEEHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxx.xxx..xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 132 dsplvkalaeaaeelfgekveli.vsg..pggtdarffagiptvmi.fgpgsglaHspnEyvdledlekgikvlarll 205
                     ++ +++l+e +++++  ++ ++   g  p   d   +   ++v i +g + ++aH +nE++++++  k +++l+++ 
     CCD23522.1 823 TNHAYQILKEEVTAAWDMEPLFVrEGGsiPCIRDLERIFDAQAVQIpCGQSTDNAHLNNENLRIKNWTKLAEILTNVF 900
                    ****************877666634446666667766633345533488555********************998875 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   2.7e-15   9.8e-12       1     106 [.     653     799 ..     653     802 .. 0.96

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 2.7e-15
                 SEB-EEEEEEEE..EE-B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC.........................................TCCTCCCCC CS
   M20_dimer   1 ighkGlaggkit..vkgkagHsg.apgagaNAieklarllaeledeegdia....................................eerslprttlnv 60 
                 +g++G++ + ++   +  + Hsg  +g  + + + l+ ++++l++e+g+i+                                    +  ++ +++l++
  CCD23522.1 653 YGLRGVINAQVSiwGDEPDRHSGvDGGVHREPTTDLINVISKLQSEDGRIQipnfylplkelsatdyamfqeimkeanidkkitieeLIINWTKPSLSI 751
                 699*********999999*******************************************************************9999999******* PP

                 EECCE-C..CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCS CS
   M20_dimer  61 tgiegGs..aknvipdeaeakidiRllpgedpeevleeieeilekeap 106
                 t+++     +++vip +a+  ++iRl+p++++e+v+++++e++++  +
  CCD23522.1 752 TTLKMSGpgNITVIPKSASIGLSIRLVPEQSVEQVKKDLTEYIKQTFA 799
                 *99976679**********************************99765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.013        48      10      37 ..      14      42 ..       7      43 .. 0.82
   2 !   10.3   0.0    0.0003       1.1      11      38 .]      65      92 ..      52      92 .. 0.84
   3 ?    2.6   0.1      0.08   2.9e+02       9      37 ..     227     279 ..     220     280 .. 0.68
   4 !    6.3   0.0    0.0055        20      23      38 .]     313     328 ..     302     328 .. 0.87
   5 !    5.8   0.1    0.0079        28      23      38 .]     399     414 ..     346     414 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.013
                S.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40 10 H.ssvtslafspdgawlasGsdDgtvriW 37
                H  s+ s+   p++++l++G+ D ++ ++
  CCD23522.1 14 HkYSILSVVSFPSKKLLFAGTQDSKILVF 42
                633499******************99875 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0003
                SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40 11 ssvtslafspdgawlasGsdDgtvriWd 38
                ssv ++  s d + l+s++ D  vriW+
  CCD23522.1 65 SSVLCMTRSNDERHLFSAGADSLVRIWS 92
                56999999******999988*******5 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.08
                 SS.SSEEEEE.........EETTSSE...............EEEEETTSEEEEE CS
        WD40   9 GH.ssvtsla.........fspdgaw...............lasGsdDgtvriW 37 
                 +H ++++s++         f++d +                ++sG+ Dg  + W
  CCD23522.1 227 AHnGFIYSICkmcssfnchFNQDYPVpssmesgdeckygyiISSGG-DGVSKTW 279
                 7855588888887777755444444488888888888888677888.9987777 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0055
                 SEEEEE.ETTSEEEEEE CS
        WD40  23 awlasG.sdDgtvriWd 38 
                 ++l +G s Dg + iWd
  CCD23522.1 313 PFLYCGlS-DGIINIWD 328
                 67999988.*******9 PP

  == domain 5  score: 5.8 bits;  conditional E-value: 0.0079
                 SEEEEEETTSEEEEEE CS
        WD40  23 awlasGsdDgtvriWd 38 
                 + l++G+ Dg++ +Wd
  CCD23522.1 399 PSLLTGGNDGSLTLWD 414
                 44778*99*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.2e-05      0.08       5      84 ..      25     110 ..      22     119 .. 0.88
   2 !    7.5   0.0    0.0014       4.8      52      87 ..     314     349 ..     299     354 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
  ANAPC4_WD40   5 ptmDLiAlatedgellvfRlngqrvwtl......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekav 84 
                  p++ L+  +t+d+++lvf l   ++ ++      +e+++ s+v ++  ++d++ L  a +d+ vr+ ++ +  + + ++v++  ++
   CCD23522.1  25 PSKKLLFAGTQDSKILVFHLPTYNLIKTiqlgnsTETNTRSSVLCMTRSNDERHLFSAGADSLVRIWSVDNNSMKNLINVEELATI 110
                  677788899***********887777666889999999**********************************99999988877655 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0014
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  +L  + sdg +++ d ++++++++l++++++ + +l
   CCD23522.1 314 FLYCGLSDGIINIWDLNTKQLISTLNTTDKSDIISL 349
                  78899**********************999988776 PP

>> DUF5484  Family of unknown function (DUF5484)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.3   0.00034       1.2       2      39 ..     325     363 ..     324     364 .. 0.88
   2 !    7.5   0.1   0.00086       3.1      15      30 ..     546     561 ..     538     570 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00034
     DUF5484   2 nikrmLfkqGLYtLnvtPkGDttkWsv.nDWikfiDenG 39 
                 ni  +  kq + tLn t k D    sv nD i  +D  G
  CCD23522.1 325 NIWDLNTKQLISTLNTTDKSDIISLSVfNDHIFAVDKSG 363
                 6667778999****************989***9999876 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00086
     DUF5484  15 LnvtPkGDttkWsvnD 30 
                  +v P GDt kW  n 
  CCD23522.1 546 FDVIPAGDTEKWNTNP 561
                 5799********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (903 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 6561.78
//
Query:       CCD23523.1  [L=145]
Description: hypothetical protein NDAI_0B04890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-33  115.2   1.3    1.9e-33  114.7   1.3    1.3  1  MRP-L27   Mitochondrial ribosomal protein L27


Domain annotation for each model (and alignments):
>> MRP-L27  Mitochondrial ribosomal protein L27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.7   1.3     1e-37   1.9e-33       1     113 []      35     131 ..      35     131 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.7 bits;  conditional E-value: 1e-37
                 XX--SSS---TTSS-HHHH---S---SEEEETTTEEEE-TTTS-EE-----TT----SEE-TTS---------HHHHHHHHHHHHHHHCC--------- CS
     MRP-L27   1 ksgnrrveltsKrGnktfykgrgargiGiltssgkyveirekvrelvvPdlegfkLKpyVsykapevkqseltsqdLfnevvaqkiikdfkegtldedl 99 
                 k+gn+r++lt+K+Gnkt+ykg++++giG++t+ g+yv++++kvr++v+P+  +++LKp+Vs++++e++++                +++fk+g+ld++l
  CCD23523.1  35 KTGNKRTPLTTKQGNKTMYKGTRSSGIGRHTKYGEYVINWRKVRTFVTPTFPNLELKPLVSHNTNELRHE----------------FTGFKKGPLDKNL 117
                 789*******************************************************************................************* PP

                 GGGCT--S--TT-S CS
     MRP-L27 100 lekklkepveegkl 113
                 +++k+ke+++ g++
  CCD23523.1 118 YFEKIKEFIRDGRV 131
                 **********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       308  (0.0171789); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1160.36
//
Query:       CCD23524.1  [L=492]
Description: hypothetical protein NDAI_0B04900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-40  139.3  18.4    2.2e-40  138.8  18.4    1.2  1  SecY             SecY translocase
    8.1e-10   38.4   0.2    8.1e-10   38.4   0.2    2.6  2  Plug_translocon  Plug domain of Sec61p


Domain annotation for each model (and alignments):
>> SecY  SecY translocase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.8  18.4   2.5e-44   2.2e-40       1     299 [.      79     468 ..      79     474 .. 0.80

  Alignments for each domain:
  == domain 1  score: 138.8 bits;  conditional E-value: 2.5e-44
                 BTTSSTCHHHHHHHHHHHHH.HHHSSSSSSTS.-S.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC........HH.HHHHHHHHHHHHHHHHHHHH CS
        SecY   1 sifaLGImPyitasIilqLl.tvvipkleelk.ke.geegrkkinqitryltvvlalvqalgialslg........lalllivlqltagtvllmwLgEq 88 
                 +++++GI P+i++ ++lqLl ++     +++k +   +++r++++++t++++v   ++   ++++s g        l+++l+ +ql+ +++++++L E+
  CCD23524.1  79 TLLEFGIFPIISSALLLQLLaGL-----KIIKvNFkIQKDRELFQTLTKLFAVSQYFILTNIFIFS-GyyganlsiLQIALLNFQLCGAGLFITLLTEV 171
                 899*****************666.....8888765699********************99998865.457899*99899******************** PP

                 HHH.HSSTTHHHHHHHHHHHHHHC.CHSS...................-HHHH..............SS.......THHHHHHHHHHHHHHHHHCHHHH CS
        SecY  89 ite.kGiGnGisllifagivarlp.kals...................gliel..............ale.....gilallllllvtllvillvvyvee 147
                 +++  G+ +Gi++l +a ++++++ +++                    +   l              +        +l+++++ +v++l+ ++v+y+++
  CCD23524.1 172 VDKgFGFASGIMILNTAAVATNFIaDTFGvsqikidaaghteaqgslmN---LiqsfrnkdttilggI-IasftrDYLPNFTTTVVVVLFAAIVCYLQS 266
                 ************************6666677777777776666655541...1444444444433331.044456889********************* PP

                 BEEEECBBBSTT....S.S-EEEEETTCCCSCHHHHHHHHHH......HHHCCCCS........................................... CS
        SecY 148 aerripvqyakrgrkggqssylPlklnyagviPiIfasslla......lpstiaqfl.......................................... 198
                 ++ ++pv++++    +g ++ +P++l+  g + ++f+  +l+      +       +                                          
  CCD23524.1 267 VRLELPVRSTRT---RGVNNVYPIRLLNIGALALLFSYIVLFyvhifsF-------Iliqivannnqesiickilghydnvnnllavptfplslltppr 355
                 **********54...499*******************999995555440.......3344445555555555555666665555555555544445554 PP

                 ..TCCCS...THHHHHHHHHHHHHH....HHHHHHTCT.THHHHHHHCCHHTBSSSCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT... CS
        SecY 199 ..lalls...psvlyvvlyvlliif....Fayfyteit.fnpkevaenlkksggfipgirpgketakyLekvlsritliGalflaliavlpdllga... 284
                   +       +++l +v+y+ +++f    Fa  + +i+ ++++++a ++k++g+++ g r+ +++ak+L+k+++ ++ +Ga++lal+av+ +llg    
  CCD23524.1 356 sfF---GgmvSQPLTFVVYTSFVVFtsicFASQWQNISgSSARDLAAEFKDQGITLTGRRE-QNIAKELDKIVPVASNTGAAMLALLAVTGELLGLkgk 450
                 331...14456688999999999999999*******************************7.9*********************************887 PP

                 ..S..TT.TTHHHHHHHH CS
        SecY 285 ..sl.igafggtslLivV 299
                    + ig  gg slL ++
  CCD23524.1 451 aaGIvIGIAGGFSLLELI 468
                 653356888999998665 PP

>> Plug_translocon  Plug domain of Sec61p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.2     9e-14   8.1e-10       1      33 [.      41      76 ..      41      77 .. 0.95
   2 ?    0.6   0.9     0.059   5.3e+02       3      12 ..     129     138 ..     129     138 .. 0.89

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 9e-14
                     HHHHHHCCSB-TT--....SSS-TCCHTTTCCCCTSS CS
  Plug_translocon  1 llYlvlsqiPLyGis....sssssDpfywlRaifAsn 33
                     l+Yl+ +++PL Gis    +++++Dp+y+lR++fA++
       CCD23524.1 41 LIYLF-AEFPLTGISkdfqTATVNDPIYFLRGVFAAS 76
                     7****.************777**************98 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.059
                      HHHHCCSB-T CS
  Plug_translocon   3 YlvlsqiPLy 12 
                      Y++l++i ++
       CCD23524.1 129 YFILTNIFIF 138
                      *******776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3678.14
//
Query:       CCD23525.1  [L=767]
Description: hypothetical protein NDAI_0B04910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-25   88.7   0.1    2.1e-11   43.7   0.0    2.6  3  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   3.7e-15   6.6e-11       1     172 [.     243     525 ..     243     542 .. 0.91
   2 ?   -3.0   0.1       0.2   3.5e+03     231     248 ..     588     605 ..     582     608 .. 0.85
   3 !   43.7   0.0   1.2e-15   2.1e-11     256     327 ..     637     712 ..     628     713 .. 0.93

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 3.7e-15
                  TS-EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-S.CCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHT............................. CS
  A_deaminase   1 nlpKvdlHvHldgclnpktllrlakkkgikeldekv.veedeklltlqekfesLkeflydlsvdvlvlh............................. 68 
                  n +K+d  + l+gc++++ l +++ kk  ++ +++v +++ +++++l++ f+ +++  +    +++ +                              
   CCD23525.1 243 NTRKIDQNLLLSGCISQHQLNDFICKKIATDSERVVyINSTGSKFKLKDIFKIMNSCTEAVHFNMKIIDdeflewyhtrylpnyhiipfqvideealk 340
                  6799999999*****************999999887368899******************************************************** PP

                  .................................................................................CCCCCCHHHHHHCCCCC CS
  A_deaminase  69 .................................................................................wlievvrllavekakdl 85 
                                                                                                   w i+  r ++  ++ + 
   CCD23525.1 341 gktlyffllaktflefdnsiegeylaqllkervinpleesvyqlaqlsvdfqfypldkdkdwwftfsdwivrwnlispyirWNIQLSRSYKKLFKVGR 438
                  ************************************************************************************************** PP

                  HCTTCCCCCCCCSHHHHHHH-GCSTCCHHHHCCCCCCCCCCHCCT.-EEEEEECCETTTCCGH.CCCHHHHHHCCCCCCCCCCCCC-TT CS
  A_deaminase  86 akdfvkylevifsPlfeatagpqlpelevvlkvvdgfdsvedesk.vkerlilvksrkpeews.eeinelasyyrdytvvnldllndek 172
                  +++f++y ++if+Pl+ a    + + l+++l  v  fd   + +     +++l  +  p+ w+ +  n+ +s+y++y +vn+   n + 
   CCD23525.1 439 VENFQDYFDIIFNPLLTADNV-NNSNLQIFLSSVCSFDLHTNVTDdYLWHSFLDTNCLPKLWTgKGDNPTISQYLYYIFVNISKIN-NI 525
                  ******************766.57*************976655541336777777777****94558999************9888.33 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.2
                  HHHHHHCT-EEEE-HHHH CS
  A_deaminase 231 qyllalaqiplevcPlSN 248
                   yl++l qip+   PlS+
   CCD23525.1 588 PYLFYLYQIPIVTQPLSS 605
                  5899************98 PP

  == domain 3  score: 43.7 bits;  conditional E-value: 1.2e-15
                  TTTT-CHHHHHHTT-EEEE--BSCCCCT-S....HHHHHHHHHHHHT--HHHHHHHHHHHHHCSSS-HHHHHHHCH CS
  A_deaminase 256 eyaenPlkeflerglnvslntDDPlqfgtt....LieeYaiaaqvfklseedlaelarNsvkqsflsadekkklld 327
                  +y +nP+ +f++ g++vsl++   l  +++    L+eeY +a++++ l ++dl+elar sv++s+    +k+++l+
   CCD23525.1 637 NYLANPFMTFFKIGFKVSLSSKSILFNNSYtaepLVEEYGVASHIYLLNAADLCELARTSVQSSGYGSYQKRNWLG 712
                  6789*****************9999888878*******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 5605.94
//
Query:       CCD23526.1  [L=535]
Description: hypothetical protein NDAI_0B04920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-40  138.2   0.0      4e-40  137.6   0.0    1.3  1  Peptidase_M28  Peptidase family M28
    1.8e-08   34.3   0.0    3.9e-08   33.2   0.0    1.6  1  PA             PA domain
    0.00045   20.0   0.0    0.00079   19.2   0.0    1.5  1  Peptidase_M20  Peptidase family M20/M25/M40
     0.0057   15.7   0.0      0.011   14.7   0.0    1.5  1  Peptidase_M42  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0     9e-44     4e-40       1     196 [.     293     493 ..     293     495 .. 0.88

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 9e-44
                    EEEEEESTTCESEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHHHHHHH..HHC.CCTTEEE CS
  Peptidase_M28   1 NviatlegkatdevlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGSkafak..akp.elkkiaa 93 
                    N+ia+++++++++ ++lgAH Dsv +  gp   G++D++sg+ +lL++a++l++   + k++vrf+++ aEE+gllGS+++a   + p e+ ki++
     CCD23526.1 293 NIIADTKNGDPENIVALGAHSDSVEE--GP---GINDDGSGTISLLTVAKQLTH--FKIKNKVRFAWWAAEEEGLLGSNYYAYhlS-PeENRKIRV 380
                    9*********999************9..**...********************9..69************************7643.36******* PP

                    EEEECS-SSSS--EEE.....HHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STTHHHHTTT--EEEE..........CTSSS-TTTTS CS
  Peptidase_M28  94 vlnlDmvgsggkellf.....esgdkssselekelkalakpvgraaaedpfdersgrgrsDhspflkagvpvldl..........aetgfpevyHt 174
                    +++ Dm++s++ e+ +       ++k+s+el++ + ++    g +    ++    ++grsD++ f+++g+p+  +          + +  +++yH+
     CCD23526.1 381 FMDYDMMASPNYEYEVydannIDNPKGSEELRDLYIDYYTSNGLN----YTLVP-FDGRSDYVGFIENGIPAGGIaagaekdnvfNGEVLDKCYHQ 471
                    ****************99666566666666666666666666654....33333.5899************************9888899****** PP

                    TTSSGGGB-HHHHHHHHHHHHH CS
  Peptidase_M28 175 prDtldnidkdtlariaelvle 196
                     +D+++n++++++  +++l+++
     CCD23526.1 472 LCDDVSNLSWEAFMVNTKLIAH 493
                    ************9988888876 PP

>> PA  PA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   8.7e-12   3.9e-08       3      89 .]     170     266 ..     168     266 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 8.7e-12
          PA   3 gplVy..s..cfagygisadfe.......gvdvkGk....ivLvqr...tfaeKarnAqaaGAagviiv.ndgelgaatgasgnegepdgitiPavgvs 82 
                 g+lV   +  c+ ++++s   +       g     +    i+L++r    f+ K+  A ++G+ +vi++ +d+   a++g  g+ gep++ t+ ++gv+
  CCD23526.1 170 GKLVEipNlgCEDADFDSV--ApppteqsG-----RspkrIALIERghcPFGNKSDLAGKHGYHAVIVYdSDP--NADSGLHGTLGEPTNNTVSTIGVT 259
                 7788664366854555332..244444432.....34444*****999*********************6444..45666778888999********** PP

          PA  83 redgeal 89 
                 +e+g +l
  CCD23526.1 260 YETGVEL 266
                 ***9775 PP

>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.8e-07   0.00079      32      97 ..     319     384 ..     308     506 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.8e-07
                    STTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHH.T.TTCESEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxx RF
  Peptidase_M20  32 GrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegle.e.rekvdavfel 97 
                    G+G +d+  g +++l ++++l   +i  k +++++ +++EE g  G+++++ +l  e ++k++ +++ 
     CCD23526.1 319 GPGINDDGSGTISLLTVAKQLTHFKI--KNKVRFAWWAAEEEGLLGSNYYAYHLSpEeNRKIRVFMDY 384
                    79*******************99998..66***********766999988885554324455544444 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.5e-06     0.011     134     217 ..     324     399 ..     322     456 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.5e-06
                    HHHHHHHHHHHHHHHHCTSS-SSEEEEEEESTCTTTSHHHHHHHHHH--SEEEEEEEEEE-CSTTSTTTTSSTTS-CEEEEEET CS
  Peptidase_M42 134 DdragvavllellkelkeeeleatvylvatvqEEvGlrGaktsaekikpdiaiavDvtaagdtpgskekeaklgkGpvirvkDa 217
                    Dd  g + ll+++k+l + +++++v +++   EE Gl G+++ a++++p++   + v +  d+  s+++e          v+Da
     CCD23526.1 324 DDGSGTISLLTVAKQLTHFKIKNKVRFAWWAAEEEGLLGSNYYAYHLSPEENRKIRVFMDYDMMASPNYE--------YEVYDA 399
                    8889999*******************************************99998888888888888888........344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4030.65
//
Query:       CCD23527.1  [L=430]
Description: hypothetical protein NDAI_0B04930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-65  219.4  14.3      4e-64  216.4  14.3    1.9  1  Mem_trans  Membrane transport protein
  ------ inclusion threshold ------
      0.013   13.8   0.0      0.022   13.1   0.0    1.3  1  OATP       Organic Anion Transporter Polypeptide (OATP) famil
       0.55   10.0   7.5        8.4    6.2   0.5    3.2  2  FixS       Cytochrome oxidase maturation protein cbb3-type
       0.85   10.1   3.5       0.94   10.0   0.3    2.5  2  DUF2542    Protein of unknown function (DUF2542)


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.4  14.3     9e-68     4e-64       2     386 ..      18     411 ..      17     412 .. 0.89

  Alignments for each domain:
  == domain 1  score: 216.4 bits;  conditional E-value: 9e-68
   Mem_trans   2 vleavvplyvimllgYgsvkwvkiftpdqcsginrfVvlfavPllifhfisqnnpyemllrfiladvlvklivlillllgallskifkgslewtitlfs 100
                 v+++v+++++i+l g++s+++ +++t++++++i+ +++++++P+lif++++++ +++ ++++ +++ ++ l+++i+ ++g++++++++++ ++t+++++
  CCD23527.1  18 VFQSVLQVVIIALAGFWSAHS-GLLTKQAQKVISAINIDLFTPCLIFSKLAKSLSMARIMEISIIPLFFALTTAISYISGKIMATVLELDRDETNFVLA 115
                 899******************.***************************************************************************** PP

   Mem_trans 101 lstlpNtlvlgipllkalyge...................ygvslmvqvvvlqciiiytlllflfeyr.gaklliseefpdtaasiv.sikvdsdvvsl 178
                 +s ++N+++l+++l+ +l+++                   +g+++++++++l+++++++++++ ++++ g++++ + + +++a+ ++ ++ +++++ ++
  CCD23527.1 116 NSIFGNSNSLPVSLTLSLAYTlpnlvwdqipndtrdnvasRGILYLLIFQQLGQMLRWSWGYNKLMKWsGENMHHMPQTQVNAHLEAvAASQENSRETS 214
                 **************************************************************9888772556667777776666655055555556666 PP

   Mem_trans 179 dgrkpleteaeikedgklhvtvrksnasrsdivssstprpsnltnaeiyslqmtrlilimvlrklirnPntyssllglilslvsfkwnvimp......k 271
                    +p+ t+ e                        ++p p+     e + + +  l   ++ +++ +nP++ys+l+++ ++++++++n ++       +
  CCD23527.1 215 VNPDPVDTDLE-----------------------DTQPGPQ-----EAFRKTINKLTDLFTVIRSYLNPPLYSMLISIGVAAITPLQNELFYnngflnN 285
                 66669999999.......................4444452.....33333333344456789*************************9999******* PP

   Mem_trans 272 iiqksisilgdaglpmalfslGlfLalqpkkiacgnsvatfa...lavRlilgPlvmlvavlavgLrgslllvaivq............aAlPqgivlf 355
                 ++ +++ +lg++++pm+l++lG++L+ +   ++ + + ++     +++R+il ++++l++++ +     ++ ++++             + +P++i+l+
  CCD23527.1 286 TFGEAVIQLGSVSIPMILIVLGSNLYPSSETFPKTHNHKKLLigsIVGRMILPSCFLLPIITCAV----KYINVSILddpiflivgfllTVSPPAIQLT 380
                 ****************************99998888888877899*****************999....566666666********************* PP

   Mem_trans 356 viAkeynvherelstllifgmlialpitlvy 386
                 +i+++++++e+e++++l++++++  ++++++
  CCD23527.1 381 QITQLNEFFEAEMADILFWSYVVLSLPVSII 411
                 ************************9999886 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.8e-06     0.022     251     346 ..     206     304 ..     180     358 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.8e-06
                 xxxxxxx....xxxxxxxxxxxxxxxx............x.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 251 kseeesa....ekkeekkkkeksksse............e.....eelkslkdfpkalkrllknpifllvilssvfeillvaGfitFlpkylEtqFsls 328
                 ++e++++                   +                  +++++l d+++++++ l+ p++ ++i  +v  i+ ++    + + +l + F+  
  CCD23527.1 206 SQENSREtsvnP--------------DpvdtdledtqpgPqeafrKTINKLTDLFTVIRSYLNPPLYSMLISIGVAAITPLQNELFYNNGFLNNTFG-- 288
                 111111111210..............122222222222203344489*************************************************8.. PP

                 xxxxxxxxxxxxxxxxxx RF
        OATP 329 aseAnlltGvvvipgaal 346
                   eA + +G+v+ip++ +
  CCD23527.1 289 --EAVIQLGSVSIPMILI 304
                 ..6778889999988764 PP

>> FixS  Cytochrome oxidase maturation protein cbb3-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.5    0.0019       8.4       3      28 ..      14      39 ..      13      39 .. 0.91
   2 ?    5.7   1.4    0.0027        12       3      24 ..     402     423 ..     400     424 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0019
        FixS  3 LylLiplSlllgllalaaFlWavksG 28
                +++L++ S+l ++++ +a +W+ +sG
  CCD23527.1 14 IAYLVFQSVLQVVIIALAGFWSAHSG 39
                7899******9999999999999998 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0027
        FixS   3 LylLiplSlllgllalaaFlWa 24 
                 ++l +p+S++++ + ++++ Wa
  CCD23527.1 402 VVLSLPVSIIVVSASIWVLQWA 423
                 57889****************9 PP

>> DUF2542  Protein of unknown function (DUF2542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.37   1.7e+03       9      65 ..      22      73 ..      13      86 .. 0.52
   2 ?   10.0   0.3   0.00021      0.94      51      76 ..     395     420 ..     388     423 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.37
     DUF2542  9 viavllvplfclreaykGwraGavdkvvknarepvyvyraedpllyfsylvlylglg 65
                v+ v+++ l  +  a+ G  +    kv+   +         +p l fs l   l+++
  CCD23527.1 22 VLQVVIIALAGFWSAHSGLLTKQAQKVISAINID-----LFTPCLIFSKLAKSLSMA 73
                4555555555566665555555555554433222.....225666666666666555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00021
     DUF2542  51 pllyfsylvlylglgvlslgmiiyll 76 
                  +l++sy+vl l ++++++++ i++l
  CCD23527.1 395 DILFWSYVVLSLPVSIIVVSASIWVL 420
                 579********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3207.25
//
Query:       CCD23528.1  [L=1405]
Description: hypothetical protein NDAI_0B04950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-31  107.9   1.4    4.7e-31  106.6   1.4    1.8  1  Cytokin_check_N  Cdc14 phosphatase binding protein N-terminus


Domain annotation for each model (and alignments):
>> Cytokin_check_N  Cdc14 phosphatase binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   1.4   2.6e-35   4.7e-31       2      71 .]      76     146 ..      75     146 .. 0.98

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 2.6e-35
  Cytokin_check_N   2 kkFLhltdpsntleelseeiverfkklYPde.eeleIlslqdenecDLDpdflvkdvFesdnlvrvilkne 71 
                      kkFLh+t+psn+l +lseei ++++k+YP+  +e+eIlslqd ++cDLDpdf+vkd+F+ +n+vrvilkne
       CCD23528.1  76 KKFLHFTKPSNSLFDLSEEILSKCEKMYPSVaNEVEILSLQDISGCDLDPDFIVKDIFNIENTVRVILKNE 146
                      9********************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3322  (0.185286); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                       434  (0.0242066); expected 17.9 (0.001)
Passed Fwd filter:                       104  (0.00580066); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 4.37u 0.47s 00:00:04.84 Elapsed: 00:00:00.96
# Mc/sec: 4408.55
//
Query:       CCD23529.1  [L=338]
Description: hypothetical protein NDAI_0B04960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1763  (0.0983323); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2553.11
//
Query:       CCD23530.1  [L=338]
Description: hypothetical protein NDAI_0B04970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-15   58.4   3.1    3.8e-15   56.9   3.1    1.9  1  CAP        Cysteine-rich secretory protein family
  ------ inclusion threshold ------
       0.78    8.7   8.6        1.8    7.5   5.4    2.0  2  BAF1_ABF1  BAF1 / ABF1 chromatin reorganising factor
        7.6    6.8  10.3        2.2    8.6   4.4    2.5  2  DUF1970    Domain of unknown function (DUF1970)


Domain annotation for each model (and alignments):
>> CAP  Cysteine-rich secretory protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   3.1   6.3e-19   3.8e-15       1     126 []     205     320 ..     205     320 .. 0.83

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 6.3e-19
                 HHHHHHHH.HHTT----EE-HHHHHHHHHHHHHHHHH.T---S-GGG--HHHHHHTT-TEEEEEES--CCCHHHHHHTSHH..............HHHH CS
         CAP   1 leahNeyR.aaaglppLkwdatLekaAqdhardcaashsdsssspeggdllkyaenagkeniaaaseaaedavdsWysepgtynkgketegs.ighftn 97 
                 l+ hN+ R   ++ p L+w+++L+  Aq++a+       +s++   +g  ++ + + g         + +  +d+Wy+e  +y++++ + +  +ghft+
  CCD23530.1 205 LNEHNNKRsLHQNTPSLSWSDELAXHAQNYADAY----DCSGNLVHSGGSYGENLALG--------YSSTGSIDAWYNEISDYDFSNPGFSEsAGHFTQ 291
                 789*****44556666****************98....44444444444444444444........777889****************9999******* PP

                 HT-SS--EEEEEEEEBTTS-E..EEEEEE CS
         CAP  98 llwpkstkvGcavatcgngsftfivvcny 126
                 ++w++st+vGc+++ c++++ + +v+c y
  CCD23530.1 292 VVWKSSTQVGCGIKDCSSNGWGSYVICSY 320
                 ****************9987789999987 PP

>> BAF1_ABF1  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.4    0.0003       1.8     115     201 ..     137     220 ..      81     245 .. 0.57
   2 ?    2.5   0.1      0.01        61      29      42 ..     265     278 ..     254     280 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0003
   BAF1_ABF1 115 saeaeteslkkdeseenketqkkkeadaadedddvsaaiaaAVaavadsknakeekkeekakkeedaeentnknenndasisqkkns 201
                 +++++t+++++++  e+   ++++++   ++++  +  +aaAVaa+++ ++a +++ +++ +  + +  n+++n+    s +q++ s
  CCD23530.1 137 EQATTTTTTSNTQAVEQPAIETTTTSPVIEQQQPTTTTVAAAVAATTTAAAAATDSGNDNLSDFASSMLNEHNNKR---SLHQNTPS 220
                 3333344444444444444444445555566677778888888888776666655544444333333222222222...22222222 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.01
   BAF1_ABF1  29 LesWYnvvndYEfq 42 
                 +++WYn + dY+f 
  CCD23530.1 265 IDAWYNEISDYDFS 278
                 799*********95 PP

>> DUF1970  Domain of unknown function (DUF1970)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.3      0.09   5.4e+02      55      79 ..      63      87 ..      14     112 .. 0.65
   2 ?    8.6   4.4   0.00037       2.2      57     106 ..     158     204 ..     132     209 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.09
                ------------------------- CS
     DUF1970 55 lGyvspssalpnrrasvtgetdvsd 79
                +  +s +s++ n  a+v++ ++v d
  CCD23530.1 63 ATSISQTSSIGNAFATVATAPAVID 87
                2345678889999999999888755 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00037
                 ---------------------------------------TTTTHHHHHHH CS
     DUF1970  57 yvspssalpnrrasvtgetdvsdavadGadllskltdsitsqlndyassl 106
                  ++ s+     ++   + t v++ava  ++ ++  tds   +l+d+ass+
  CCD23530.1 158 TTTTSPV---IEQQQPTTTTVAAAVAATTTAAAAATDSGNDNLSDFASSM 204
                 4444444...4444455688***************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1395  (0.0778069); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2494.25
//
Query:       CCD23531.1  [L=227]
Description: hypothetical protein NDAI_0B04980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-55  185.4   1.1    6.4e-55  185.2   1.1    1.1  1  Ras          Ras family
    1.2e-36  125.6   0.1      2e-36  124.8   0.1    1.4  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    5.6e-14   52.0   0.4    8.1e-14   51.5   0.4    1.2  1  Arf          ADP-ribosylation factor family
    8.7e-07   28.7   0.2    1.4e-06   27.9   0.2    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    3.2e-06   27.2   0.1      7e-06   26.1   0.1    1.7  1  MMR_HSR1     50S ribosome-binding GTPase
    7.3e-06   25.5   0.2      9e-06   25.2   0.2    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    0.00086   19.3   0.1       0.67    9.8   0.0    2.4  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.011   15.0   0.4        2.3    7.3   0.0    2.4  2  G-alpha      G-protein alpha subunit
      0.011   15.1   0.0      0.018   14.3   0.0    1.4  1  Septin       Septin
       0.02   15.3   0.0       0.04   14.3   0.0    1.5  1  AAA_16       AAA ATPase domain
      0.025   14.0   0.0       0.06   12.7   0.0    1.6  2  TniB         Bacterial TniB protein
       0.14   12.3   0.1        1.1    9.4   0.0    2.2  2  DUF4287      Domain of unknown function (DUF4287)


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.2   1.1   4.3e-58   6.4e-55       1     161 [.       5     187 ..       5     188 .. 0.97

  Alignments for each domain:
  == domain 1  score: 185.2 bits;  conditional E-value: 4.3e-58
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET......TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd......gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkw 93 
                 Klvl+Gds+vGK+s+++rfvkd+F+e  esTig++f+ ++i+++      + ++k+eiwDTAGqe++ksl+++yyr+a+++l+vyd+t+++s++++ +w
  CCD23531.1   5 KLVLLGDSSVGKSSIVHRFVKDSFDELRESTIGAAFLAQTIKIKdtetqeDIDIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDLTQKNSLSKAMSW 103
                 99*****************************************98888888899********************************************* PP

                 HHHHHHHST.TTSEEEEEEETTTGGG...............G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras  94 veeikrvae.envpivLvGnKvDlee...............kravsteegeelakelglkfletSAktnenveeafeellreil 161
                 v+e+k+++  e+++i+LvGnK Dl +               kr+v+t+e+ ++ak++gl f e+SAkt ++v+e+f+++ ++++
  CCD23531.1 104 VDELKSKVGdEDLVIYLVGNKLDLCDnvenrggkeqeeeenKRVVTTQEADSYAKDQGLLFAEISAKTGQGVKEVFQTIGEKLY 187
                 *****9999899*******************************************************************99875 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.1   1.4e-39     2e-36       1     120 []       5     127 ..       5     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 1.4e-39
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K+vl+Gds+vGK+s+++rfv+d+f+e ++stig+ fl +++ kik +e+++++ ++k++iWDtaGqer++sl+p+y+r+a++a++vyd   ++s +++ 
  CCD23531.1   5 KLVLLGDSSVGKSSIVHRFVKDSFDELRESTIGAAFLAQTI-KIKDTETQEDI-DIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDltqKNSLSKAM 101
                 99***********************************9997.89999998887.5*********************************64222336677 PP

                 HHHHHHHHHCSSS.-EE.EEEE-TTT CS
         Roc  97 eWlkelkkvagks.pvi.lvgnkiDl 120
                 +W++elk+++g++  vi lvgnk+Dl
  CCD23531.1 102 SWVDELKSKVGDEdLVIyLVGNKLDL 127
                 9******998876233359*****95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.4   5.4e-17   8.1e-14      15     173 ..       4     184 ..       2     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 5.4e-17
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE........TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHH CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei........knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeake 102
                 ++++llG  + GK+ i++++ ++++++    Tig  f  ++++i         ++kf++wD  Gqe+ ++l   Y+++ +a + v D ++++ l++a +
  CCD23531.1   4 FKLVLLGDSSVGKSSIVHRFVKDSFDElRESTIGaaFLAQTIKIkdtetqedIDIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDLTQKNSLSKAMS 102
                 799*******************999985567777335567888855555555679******************************************** PP

                 HHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGG...SS........SSSSEEEEEEBTTTTBTHHHHHHHHHH CS
         Arf 103 eLkalleeeelkevallvlaNKqDlpealseeelrellglee...lk........gkrkleiqkcsavkgeglkeglewlse 173
                  +++l ++   ++ ++ +++NK Dl + ++++  +e+ + e+   ++        +++ l  ++ sa +g+g+ke ++ + e
  CCD23531.1 103 WVDELKSKVGDEDLVIYLVGNKLDLCDNVENRGGKEQEEEENkrvVTtqeadsyaKDQGLLFAEISAKTGQGVKEVFQTIGE 184
                 ****************************999888887777776662244555555789999999***********9998765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.2   9.7e-10   1.4e-06      54     191 ..      43     185 ..       5     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 9.7e-10
                 SCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGST....HHHHHHHH CS
    GTP_EFTU  54 iTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrl....kaelkeiv 143
                  Tik++ ++++ e  + ++ + Dt G + + +     +r ++ a++v d ++       ++   e+   + +e++ i ++ NK+D +    +   ke+ 
  CCD23531.1  43 QTIKIKDTETQ-EDIDIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDLTQKnslskAMSWVDELKSKVGDEDLVIYLVGNKLDLCdnveNRGGKEQE 140
                 49999999999.8999***********************************886777688888888888888999999999******877444444444 PP

                 HHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHH CS
    GTP_EFTU 144 eevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvel 191
                 ee ++++  ++++ ++y+ ++     ++ +Sa++g+gvk++++++ e+
  CCD23531.1 141 EEENKRV-VTTQEADSYAKDQ--GLLFAEISAKTGQGVKEVFQTIGEK 185
                 4444444.4455565665554..699***************9998665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1   4.7e-09     7e-06       2      93 ..       6     100 ..       5     199 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 4.7e-09
                 EEEEESTTSSHHHHHHHHHT.......STEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTT.CSH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg.......ekaivsdkpgtTrdinegrvklkg.keielvDtpGliegaseekglgkaflaleeadlillvvdasee.klk 91 
                  +++G + vGKS+++ + ++       e  i +++   T++i+  + +++   ++e++Dt+G  e   + k+l+  + +  +a+++l+v d++++ +l+
  CCD23531.1   6 LVLLGDSSVGKSSIVHRFVKdsfdelrESTIGAAFLAQTIKIKDTETQEDIdIKFEIWDTAG-QE---RYKSLAPMYYR--NANAALVVYDLTQKnSLS 98 
                 6899***************86655442245668889999999888888554589********.44...34455555554..455666666655331222 PP

                 HH CS
    MMR_HSR1  92 pl 93 
                 + 
  CCD23531.1  99 KA 100
                 22 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.2     6e-09     9e-06       1     145 [.       5     149 ..       5     181 .. 0.74

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 6e-09
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsii....Fdnylard..tlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.le 92 
                 k++L+G s+ GK+s+        Fd++      + +l++ti+++ +e +    +++++wD  Gqe++        +   +rn ++ + V D ++++ l+
  CCD23531.1   5 KLVLLGDSSVGKSSIVHRFvkdsFDELRESTigAAFLAQTIKIKDTETQEDIDIKFEIWDTAGQERYKSL-----APMYYRNANAALVVYDLTQKNsLS 98 
                 899***********9765424447776554411689****************************998665.....578899999999999999765466 PP

   Gtr1_RagA  93 edletlkeilealrqyspeakvfvlihKmDliqedereeifeerkeeireeie 145
                 ++++   e+ +++   ++++ +    +K+Dl ++ e++   e+++ee ++ ++
  CCD23531.1  99 KAMSWVDELKSKVG--DEDLVIYLVGNKLDLCDNVENRGGKEQEEEENKRVVT 149
                 66666555555543..4566677777898888776666655555555555444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00045      0.67     102     122 ..       6      26 ..       2      55 .. 0.83
   2 !    7.3   0.0    0.0027         4       5      96 ..      71     181 ..      67     189 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00045
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                   vl+G S vGKS+++ +++ +
   CCD23531.1   6 LVLLGDSSVGKSSIVHRFVKD 26 
                  599************998775 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0027
                  S-EETTTTEES--EEEEEEESTTTT-...-HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHH................HHHHHHHHHHHTTSEEEE-- CS
  RsgA_GTPase   5 knelvrpkvaNvdqllivvslkepel...slnlldrfLvlaeekgiepvivlnKiDlleeee................eleelkeelealgyevllvs 83 
                   ++l      N + +l+v  l++++     ++ +d +   + ++++ + +v nK+Dl+++ e                +++e  +  ++ g+ +  +s
   CCD23531.1  71 YKSLAPMYYRNANAALVVYDLTQKNSlskAMSWVDELKSKVGDEDLVIYLVGNKLDLCDNVEnrggkeqeeeenkrvvTTQEADSYAKDQGLLFAEIS 168
                  5555555566777777777777544311122345555566667777788888*******999666666666666665555555555566666666666 PP

                  TTTHTTHHHHHHH CS
  RsgA_GTPase  84 aktkegleelkel 96 
                  akt++g++e+ + 
   CCD23531.1 169 AKTGQGVKEVFQT 181
                  6666666666655 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0041       6.1      24      44 ..       4      24 ..       2      39 .. 0.84
   2 ?    7.3   0.0    0.0015       2.3     186     230 ..      42      86 ..      25     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0041
                EEEEEEESTTSSHHHHHHHHH CS
     G-alpha 24 vkllllGqseSGKsTilkqlk 44
                +kl+llG s+ GKs+i+  + 
  CCD23531.1  4 FKLVLLGDSSVGKSSIVHRFV 24
                79**************98875 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0015
                 ----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCT.TTECEEE CS
     G-alpha 186 lktvGisetkfevdsklefrivdvgGqrserkkWvpff.ddvdaii 230
                  +t+ i++t+ + d +++f+i+d++Gq    k  +p++  +++a +
  CCD23531.1  42 AQTIKIKDTETQEDIDIKFEIWDTAGQERY-KSLAPMYyRNANAAL 86 
                 5799***********************976.566665447777665 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.2e-05     0.018       4      71 ..       3      67 ..       1      71 [. 0.83

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
                EEEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE--- CS
      Septin  4 eftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpg 71
                +f l++ G+s++Gk++++  +++++  e ++ +  +   ++t++ik ++   +ed + +++ + Dt g
  CCD23531.1  3 QFKLVLLGDSSVGKSSIVHRFVKDSFDELRESTIGAAFLAQTIKIKDTE--TQED-IDIKFEIWDTAG 67
                89*********************99999987777777777787777655..4555.889999999987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.7e-05      0.04      27     108 ..       6      74 ..       5     120 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.7e-05
      AAA_16  27 vllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleealaav 108
                 ++l G+s vGKss+v ++ +   ++    lr+ +          a laq++   ++   + +e+ + ++e w+++ +e++++ 
  CCD23531.1   6 LVLLGDSSVGKSSIVHRFVKDSFDE----LRESTIGA-------AfLAQTI---KIKDTETQEDIDIKFEIWDTAGQERYKSL 74 
                 5899***********8888755544....44443333.......4477777...56666777777788888888888888733 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     4e-05      0.06      38      60 ..       6      28 ..       3      53 .. 0.86
   2 ?   -2.5   0.0       1.9   2.9e+03      64      90 ..     139     167 ..     128     182 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4e-05
        TniB 38 lllvGdsnnGKtmivekFarlhp 60
                l+l+Gds +GK++iv++F ++  
  CCD23531.1  6 LVLLGDSSVGKSSIVHRFVKDSF 28
                789***************99875 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
        TniB  64 dedaekvpvlvvq.appkpdekr.lyaai 90 
                 +e++e+ +v++ q a + +++++ l+a+i
  CCD23531.1 139 QEEEENKRVVTTQeADSYAKDQGlLFAEI 167
                 34444555555542555555544144555 PP

>> DUF4287  Domain of unknown function (DUF4287)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.68     1e+03      25      42 ..      92     109 ..      89     112 .. 0.84
   2 ?    9.4   0.0   0.00074       1.1       5      38 ..     163     196 ..     162     204 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.68
     DUF4287  25 dekgllvkhgeivawLke 42 
                 ++k++l+k++  v+ Lk+
  CCD23531.1  92 TQKNSLSKAMSWVDELKS 109
                 6788888*****999997 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00074
     DUF4287   5 yldniekkTGktldewlaladekgllvkhgeiva 38 
                 +++ i +kTG+ ++e ++++ ek +++k  e++a
  CCD23531.1 163 LFAEISAKTGQGVKEVFQTIGEKLYEIKKPELLA 196
                 6899*****************9999988777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1676.45
//
Query:       CCD23532.1  [L=543]
Description: hypothetical protein NDAI_0B04990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-36  126.5  21.0    1.6e-32  113.2  20.5    2.0  2  Mitofilin  Mitochondrial inner membrane protein
  ------ inclusion threshold ------
      0.011   16.1   3.5      0.011   16.1   3.5    4.4  6  Enkurin    Calmodulin-binding
       0.91    9.9   9.3        1.4    9.3   4.7    2.5  2  DUF1104    Protein of unknown function (DUF1104)
        5.6    7.3  11.2       0.18   12.1   2.7    2.9  3  DUF4709    Domain of unknown function (DUF4709)
        5.6    6.2   7.3       0.53    9.6   2.6    1.7  2  DUF4407    Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> Mitofilin  Mitochondrial inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.5   4.4e-06     0.016      12     104 ..      53     140 ..      46     167 .. 0.63
   2 !  113.2  20.5   4.5e-36   1.6e-32     213     621 ..     128     539 ..     117     541 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.4e-06
   Mitofilin  12 vlivgvgvGGvvlya.kkddeFrdfleksvPyseevvdylleedpplaeklkeisklqvsavsevtkeskepkeekkkeks...ekqssassevaee 104
                 + iv++++ ++ + + k+d +F+df++ +vP+++++ d  +  +         + +l+ +++s +t++  ++       k+   +k ++++++ +++
  CCD23532.1  53 IFIVTGFYLLGLTISeKYDGKFKDFFIGYVPGGKQLTDWYDSFE---------FNRLKEKYSSIITGRTIGIPIHRPIPKKitdDKSEQEPENEQKA 140
                 445555554444444289********************999999.........88888888888888776654433322221112222222222222 PP

  == domain 2  score: 113.2 bits;  conditional E-value: 4.5e-36
   Mitofilin 213 aakplldaaeetlekliehlkkveekvekaqslaklvekykelveeerevFqqelesiipeiitnlkednkklskddlnsliahAkteidqlskelael 311
                  ++++ +++e++++ l+  +k++ +++ k    + + ++++ +++  +++F + +++ ++ +i  +++++  l +d+ +s++ + ++ i+ l      l
  CCD23532.1 128 DKSEQEPENEQKAKTLL-TEKSIATELLKL---NPIEKELNNNESPLDDQF-RSIVNHFNILIKLINDQQYLLPMDQRDSIVSKYDALISDLFI----L 217
                 33334444444444444.444444444443...333344444444434442.456666677777777777778899999999887777766666....9 PP

   Mitofilin 312 kkeeekkieralekqkee.lekqeealsarleeerakeerqlrlelereleeireeyeekLrteLerqaeaheehLkdvlveqeieLkrefqqeikekv 409
                  k+ ++ i +++ ++ +e  +++ ++  ++l+++  + ++++++++     e+ ++ +e+L+ eL+  +e + ++  ++++   i    ef++ i+ekv
  CCD23532.1 218 NKNLDESIMKSVLQRTAEfTSQLNSQFDSNLKKHSVELNKEYNDKFTDFKSELEKRSKEQLEMELKSIEELLLQRHANEMKLLSITQVKEFNKIIEEKV 316
                 99999999999999999989999999999999999999999999999999************************************************* PP

   Mitofilin 410 eeEragrllkLaellaklkglekaleshaeaedenrkaqqLwlAveaLrstlksasadkrtrPlkdelkalkel................asdDevvka 492
                   Er+g l+ L+el+ +++++   ++   + + +n  ++ L + +e+Lr +l +    +r    ++el+ +k+l                 +   ++++
  CCD23532.1 317 SGERNGKLAHLDELDQRISEFTSSIDKLDSYLTKNETIKRLVINLENLRNKLYTNV--SRSVQINKELNKIKTLidilpnschddhccskKHTQTLLDV 413
                 *****************************************************996..588********************666666544455579*** PP

   Mitofilin 493 vlaslpeealqrGvyseaaLrerFrkVakevRkvalvdpegagllshalSyllSkllfkpkqgeldvagdDvesiLaRAeyyLeegdLdkAaremnsLk 591
                  +++l+  a+   + s ++L +r + ++   + ++l+ p +agll+h+ +   S +lf  k+g + ++++D ++i aR++ yL+ + LdkA  e+  L 
  CCD23532.1 414 TIQQLNDIATDEKILSNDQLFNRWNLLENDFKTASLL-PANAGLLAHMTAKFFSNFLFT-KNGIS-PDSKDLDAIFARVKEYLRFSQLDKALEEVVTLE 509
                 *************************************.*********************.77666.9******************************** PP

   Mitofilin 592 GwskklasDWLkeaRkvlevqqalellqae 621
                 Gw+  l ++W+ke+R++le + ++++l  e
  CCD23532.1 510 GWPHVLCQEWIKETRRKLEIEALVDILDNE 539
                 **************************9766 PP

>> Enkurin  Calmodulin-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.46   1.7e+03      10      42 ..     128     148 ..     121     204 .. 0.55
   2 ?   16.1   3.5   3.1e-06     0.011      48      89 ..     246     287 ..     219     295 .. 0.91
   3 ?   -1.9   0.0       1.3   4.8e+03      46      63 ..     326     343 ..     306     366 .. 0.65
   4 ?   -1.2   0.1      0.81   2.9e+03      55      69 ..     376     390 ..     332     395 .. 0.60
   5 ?   -1.7   0.0       1.2   4.2e+03      42      66 ..     425     449 ..     399     455 .. 0.68
   6 ?    0.2   0.1      0.29     1e+03      68      94 ..     517     543 .]     491     543 .] 0.75

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.46
     Enkurin  10 rkkeleeeeeeeekeeaekkeappgmrllseee 42 
                  k+e+e e+e+++k              l+e+ 
  CCD23532.1 128 DKSEQEPENEQKAKTL------------LTEKS 148
                 3333333333333333............33222 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 3.1e-06
     Enkurin  48 egLkkkweelnkeyqslpllidtlskrqrKeklEkeLkqlEk 89 
                 ++Lkk+  elnkey+   + + +  +++ Ke+lE eLk +E+
  CCD23532.1 246 SNLKKHSVELNKEYNDKFTDFKSELEKRSKEQLEMELKSIEE 287
                 68***************************************8 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.3
     Enkurin  46 llegLkkkweelnkeyqs 63 
                  l++L ++ +e ++   +
  CCD23532.1 326 HLDELDQRISEFTSSIDK 343
                 444555555554444444 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.81
     Enkurin  55 eelnkeyqslpllid 69 
                  ++nke++++ +lid
  CCD23532.1 376 VQINKELNKIKTLID 390
                 144555555544444 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 1.2
     Enkurin  42 erqellegLkkkweelnkeyqslpl 66 
                 e+    ++L ++w+ l+++++  +l
  CCD23532.1 425 EKILSNDQLFNRWNLLENDFKTASL 449
                 3333345888888888888887775 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 0.29
     Enkurin  68 idtlskrqrKeklEkeLkqlEkdikll 94 
                  + +++ +rK ++E+  + l+++ikll
  CCD23532.1 517 QEWIKETRRKLEIEALVDILDNEIKLL 543
                 45567889999****999999999986 PP

>> DUF1104  Protein of unknown function (DUF1104)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4     0.042   1.5e+02      39      67 ..     231     259 ..     217     262 .. 0.79
   2 ?    9.3   4.7    0.0004       1.4      20      76 ..     261     317 ..     255     332 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.042
                 HHHHHHHHHHHHHHHHHHTTS-HHHHHHH CS
     DUF1104  39 kekkkfkkklkeaaeknlekmtvkefekl 67 
                 +   +f ++l+++ ++nl+k +v+  +++
  CCD23532.1 231 QRTAEFTSQLNSQFDSNLKKHSVELNKEY 259
                 5667999*************999866666 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0004
                 GGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH CS
     DUF1104  20 eevldykmevaKrlkslkekekkkfkkklkeaaeknlekmtvkefeklrkevrkalk 76 
                  ++ d+k+e++Kr k+  e e k++++ l +   ++++ +++ + +++ k ++++++
  CCD23532.1 261 DKFTDFKSELEKRSKEQLEMELKSIEELLLQRHANEMKLLSITQVKEFNKIIEEKVS 317
                 5799*************************************9999999999988876 PP

>> DUF4709  Domain of unknown function (DUF4709)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       2.1   7.6e+03      18      56 ..     148     187 ..     136     192 .. 0.61
   2 ?   12.1   2.7   4.9e-05      0.18      42      91 ..     225     274 ..     209     291 .. 0.78
   3 ?   -1.4   0.0      0.79   2.8e+03      29      75 ..     354     371 ..     320     388 .. 0.51

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.1
     DUF4709  18 atQTdvsEilel.keltevtqkLvkevkslkrdfeflkql 56 
                 ++ T+   + ++ kel ++ + L  + +s+ ++f++l +l
  CCD23532.1 148 SIATELLKLNPIeKELNNNESPLDDQFRSIVNHFNILIKL 187
                 4445555555554566677777777777777777766665 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.9e-05
     DUF4709  42 evkslkrdfeflkqllqakyeeklkeealelytrlndklkeleklykekv 91 
                 ++ks+ + ++   + l+ +++++lk++++el ++ ndk+++ ++  +++ 
  CCD23532.1 225 IMKSVLQRTAEFTSQLNSQFDSNLKKHSVELNKEYNDKFTDFKSELEKRS 274
                 4666655555566679***********************99887777765 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.79
     DUF4709  29 lkeltevtqkLvkevkslkrdfeflkqllqakyeeklkeealelytr 75 
                 +k+l+ ++++L                               +lyt+
  CCD23532.1 354 IKRLVINLENL-----------------------------RNKLYTN 371
                 23333333333.............................2233333 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2         1   3.7e+03     111     153 ..     124     167 ..     118     191 .. 0.46
   2 ?    9.6   2.6   0.00015      0.53     106     239 ..     223     381 ..     209     399 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1
     DUF4407 111 elaeeqqeeakelkeqlaaa.ltaelaeleaqiaalqaeidaae 153
                 ++ + ++e++ e++++ ++   ++ +a++  +++ +++e+++ e
  CCD23532.1 124 KITDDKSEQEPENEQKAKTLlTEKSIATELLKLNPIEKELNNNE 167
                 44444444444444443333322333333333333333333333 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00015
     DUF4407 106 keIdaelaeeqqeeakelkeqlaaa...........ltaelaeleaqia................alqaeidaaearldalraeaqkeldgtk...... 171
                 ++I + + ++ +e +++l++q +++           +           +                +l+ e+++ e+ l +  a+  k l+ t+      
  CCD23532.1 223 ESIMKSVLQRTAEFTSQLNSQFDSNlkkhsvelnkeY-----------NdkftdfkselekrskeQLEMELKSIEELLLQRHANEMKLLSITQvkefnk 310
                 3444444444444444444444444333344444442...........244554445555777778888888888888777777777777777888888 PP

     DUF4407 172 .....gtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaaa 239
                       +g   ++Gk +  +e ++ + + +  +++l++ l++++++++l  +l+ l++++ +++++s + +++
  CCD23532.1 311 iieekVSG--ERNGKLAHLDELDQRISEFTSSIDKLDSYLTKNETIKRLVINLENLRNKLYTNVSRSVQINKE 381
                 88765444..478999999999999999999999999999999999999999999988888888877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1404  (0.0783089); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 3494.72
//
Query:       CCD23533.1  [L=561]
Description: hypothetical protein NDAI_0B05000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-18   66.1  40.5    8.2e-11   42.0   4.6    3.8  3  IBR             IBR domain, a half RING-finger domain
    2.3e-05   24.2  12.5    2.3e-05   24.2  12.5    4.7  4  zf-C3HC4        Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
        1.7    9.0  10.3      0.037   14.4   2.6    2.0  2  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   8.1       0.1   6.1e+02      43      57 ..     202     221 ..     181     231 .. 0.73
   2 !   42.0   4.6   1.4e-14   8.2e-11       5      62 .]     254     322 ..     250     322 .. 0.88
   3 !   34.6  12.0   2.7e-12   1.6e-08      12      58 ..     339     386 ..     327     392 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.1
         IBR  43 kCgfefCfnCkkew.....H 57 
                 +Cg+e+C++C + +     H
  CCD23533.1 202 ECGHEYCLDCYRHYiedklH 221
                 5*********9887555555 PP

  == domain 2  score: 42.0 bits;  conditional E-value: 1.4e-14
         IBR   5 klklkksles.dpnlkwCprpdCeaiieksegcks...........vtCskCgfefCfnCkkewHeglsC 62 
                 + + k+++++ ++n+kwCp++dC+ ii+ ++ ++            v+C+  +++fCf+C+ e H++++C
  CCD23533.1 254 RSSIKSFVQKhHRNYKWCPYADCKFIIHLKDTSSLgeytrlhyspfVKCN-ESHRFCFHCGFEVHAPADC 322
                 56789999999*************9998888833355688999*******.9****************99 PP

  == domain 3  score: 34.6 bits;  conditional E-value: 2.7e-12
         IBR  12 les.dpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCkkew..He 58 
                 l++    +k Cp  +C+  iek+ gc+++ C +C++efC+ C ++w  H+
  CCD23533.1 339 LNWvLTHTKECP--KCSVNIEKNGGCNHMVCGNCKYEFCWICESAWapHG 386
                 455445589***..********************************7775 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2  12.5   3.8e-09   2.3e-05       1      41 []     187     231 ..     187     231 .. 0.96
   2 ?    0.1   4.3      0.13   7.8e+02      18      27 ..     305     314 ..     295     322 .. 0.81
   3 ?    0.8   0.4     0.077   4.6e+02      28      41 .]     340     352 ..     338     352 .. 0.70
   4 ?   -4.3  12.1         3   1.8e+04       1      25 [.     349     370 ..     349     392 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.8e-09
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC....TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilks....rkkvkCPlC 41 
                 C iC++  ++++ +leC+H++C +C+r+++++     +  +C+ C
  CCD23533.1 187 CFICCDDKTTETFSLECGHEYCLDCYRHYIEDklheGNIITCMDC 231
                 99******************************999889999**99 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.13
                 S--B-CHHHH CS
    zf-C3HC4  18 kHsfCskCir 27 
                  H+fC++C  
  CCD23533.1 305 SHRFCFHCGF 314
                 4*******65 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.077
                 HHHHCTSSB--TTT CS
    zf-C3HC4  28 kilksrkkvkCPlC 41 
                 +++    +++CP+C
  CCD23533.1 340 NWVL-THTKECPKC 352
                 5666.45567**** PP

  == domain 4  score: -4.3 bits;  conditional E-value: 3
                 -TTT-S--SS-E.E-TTS--B-CHH CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskC 25 
                 Cp C  +++++     C+H +C +C
  CCD23533.1 349 CPKCSVNIEKNG---GCNHMVCGNC 370
                 788888887777...9999999999 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   1.0      0.96   5.8e+03      29      35 ..      12      18 ..       2      29 .. 0.49
   2 ?   14.4   2.6   6.1e-06     0.037      11      38 ..      49      76 ..      42     121 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.96
  CENP-B_dimeris 29 dedeedd 35
                    dede d+
      CCD23533.1 12 DEDESDE 18
                    2222222 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 6.1e-06
  CENP-B_dimeris 11 dsesesdeeeeeeeedeededeeddedd 38
                    +se + d++e++  ++ eded+edd+dd
      CCD23533.1 49 ESEFDIDDDEDDAIHEYEDEDDEDDNDD 76
                    4555555555555555666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       963  (0.0537119); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.47
# Mc/sec: 3580.19
//
Query:       CCD23534.1  [L=731]
Description: hypothetical protein NDAI_0B05010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     8e-175  582.1   4.1   9.7e-175  581.9   4.1    1.1  1  DUF3808   Protein of unknown function (DUF3808)
     0.0037   17.6   0.1      0.079   13.4   0.1    2.6  2  HARE-HTH  HB1, ASXL, restriction endonuclease HTH domain
  ------ inclusion threshold ------
      0.026   14.6   0.2         30    5.1   0.0    4.1  3  TPR_2     Tetratricopeptide repeat
       0.21   12.3   3.6        1.7    9.4   0.1    3.7  4  TPR_16    Tetratricopeptide repeat
        1.1    9.8   4.5        1.7    9.2   0.1    3.4  3  TPR_19    Tetratricopeptide repeat
        4.6    7.6   5.8          5    7.5   0.0    3.8  5  TPR_12    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DUF3808  Protein of unknown function (DUF3808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  581.9   4.1  3.2e-178  9.7e-175       1     477 []      38     635 ..      38     635 .. 0.96

  Alignments for each domain:
  == domain 1  score: 581.9 bits;  conditional E-value: 3.2e-178
     DUF3808   1 lqaldlvLndkfeeaeellkea.....skeSslhalgrgviafleAvltfepekmkkAsealkeaeklceksrkkaqkneskqnlssdslyepgleaev 94 
                 l+a+d+vL+d++e+++ ll+e+     s++ ++++l+rgvi+fleA+l+fe+e+mkkAs +l++ae+l+ ksr++aqk      + s+sly+pg++++v
  CCD23534.1  38 LRAMDYVLDDRAENGLRLLNESeekdgSDH-TINVLARGVIEFLEATLGFEAEEMKKASATLAKAENLSLKSRQRAQKLG---LK-SSSLYPPGTVYAV 131
                 58******************7777675555.9************************************************...44.569********** PP

     DUF3808  95 cyaealLlkAlLtflseslvefiKgglklRkaYqiykeilkeikklekkkrskt............................................. 148
                 +y+e++Ll+AlL+++ses++e++K++lklRkaY++++eil eikk++k k+s+t                                             
  CCD23534.1 132 TYTESCLLHALLMLFSESMMEAAKAVLKLRKAYYMLQEILGEIKKANKIKKSSTyknesnsssasfinsdtkfvsvdipyaltpeeqknkellenaemi 230
                 ***********************************************9999999********************************************* PP

     DUF3808 149 .....................................eeeeesllseekn.sqaeideflesGvnlgfGilqlviSllPpailklLsvvGFsGdreeGL 209
                                                      e +e++ l ++ + sqa+idef++sGvnl+fGilq+v+SllPpai+++Lsv+GF+G+reeGL
  CCD23534.1 231 hkmrterlsgahignppainrlrhelglnamdtlpenEIKEHTYLTADIDeSQATIDEFIHSGVNLCFGILQVVLSLLPPAIGAVLSVIGFRGSREEGL 329
                 **********************************998555555566666579*********************************************** PP

     DUF3808 210 rlLweasksrnlraalallaLlfYytgvvqvldid...........................dg..lkapleeleelLlksrkrfPksalwllfearie 279
                 rl+w+a+k+rn++++++llaL+fYy+g++q++d d                           dg  l +p+++le++Ll+sr++fP+salwll+ear++
  CCD23534.1 330 RLVWKATKQRNVHGCIGLLALMFYYDGPFQFTDDDfdipattvdklsrkstntsmattssvmDGptLLHPGKILEDALLQSRALFPNSALWLLNEARML 428
                 **********************************666778889999999************97778********************************* PP

     DUF3808 280 slkgnldeAlelleeiieesqselkqvkhlclfelaltlvylheykeaaesfleLlklskwSkalYtYlaaacllelgre........ekkaeakekae 370
                 s kg+l+eA++l+++i   ++++++qvk l++f++a tlv+lhey++aae+ l+Ll++s+wS+++YtY+a++c+le++r+         k++ +k+ka+
  CCD23534.1 429 SGKGRLEEAVALMDSID-VNKIHMRQVKVLMIFDRANTLVHLHEYDRAAEDLLSLLECSDWSHSFYTYFAGCCYLENWRMcqmglkdkSKEEFYKKKAT 526
                 **************995.********************************************************************99889999***** PP

     DUF3808 371 elfkevpkllqkkag..kslplekFilrKverfkarkke.kkselldavlvspvlEliYvwngfsrmskeeleeesvkkleekaanke.seeeeDdell 465
                 el++ + +ll+kk++  k+lp+e+F+lrKve+fk+ +k+ k +++lda+++spv+El Y++ng++rm+++ l+  ++k+l+e+ +n++ + +++D+el+
  CCD23534.1 527 ELIFGAIDLLGKKTFkaKNLPMERFMLRKVEQFKKAQKSlKVENPLDAIATSPVHELSYFYNGYNRMTEDGLQ-LAKKMLTEY-HNPAvDAKDVDQELI 623
                 ***************************************99********************************.999999888.68897789******* PP

     DUF3808 466 kkLLkglvlrrl 477
                 k++L++lv+rrl
  CCD23534.1 624 KNILLSLVFRRL 635
                 **********97 PP

>> HARE-HTH  HB1, ASXL, restriction endonuclease HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.17   4.9e+02      25      51 ..     110     135 ..     109     137 .. 0.86
   2 !   13.4   0.1   2.6e-05     0.079       2      62 ..     149     207 ..     148     214 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.17
                 HHHHHHTTS-..GGHHGCHHH.HHHHH CS
    HARE-HTH  25 ekiqekglikltgktpeatlaaqlytd 51 
                 +++q++gl++++   p+ t++a+ yt+
  CCD23534.1 110 QRAQKLGLKSSS-LYPPGTVYAVTYTE 135
                 68999***9955.7799******9997 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.6e-05
                 -HHHHHHHHHHHH-S-EEHHHHHHHHHHHTTS-.....GGHHGCHHH.HHHHHHH.HSTTEEES CS
    HARE-HTH   2 tlkeaAkqVLeeegrpltvkeIwekiqekgliklt...gktpeatlaaqlytdikgddslFvkv 62 
                 ++ eaAk VL+  + +   +eI+ +i +++ ik++   +++ +       ++ i+  d+ Fv+v
  CCD23534.1 149 SMMEAAKAVLKLRKAYYMLQEILGEIKKANKIKKSstyKNESNS----SSASFIN-SDTKFVSV 207
                 689******************************98564443444....4444443.55568887 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.026        77       1      23 [.     418     440 ..     418     442 .. 0.89
   2 ?    5.1   0.0    0.0099        30       5      29 ..     460     484 ..     459     486 .. 0.87
   3 ?   -0.7   0.0      0.69   2.1e+03       6      25 ..     627     646 ..     625     647 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.026
       TPR_2   1 aealynlGlayyklgdyeeAlea 23 
                 a +l n ++ +  +g++eeA+++
  CCD23534.1 418 ALWLLNEARMLSGKGRLEEAVAL 440
                 67999***************986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0099
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 + +++ + +l +y++A+e++   le
  CCD23534.1 460 FDRANTLVHLHEYDRAAEDLLSLLE 484
                 679***************9977765 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.69
       TPR_2   6 nlGlayyklgdyeeAleafe 25 
                  l l+ ++lgd +e +++++
  CCD23534.1 627 LLSLVFRRLGDVQEGADLLD 646
                 5788999*****99888776 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       2.4   7.2e+03      12      28 ..      33      49 ..      28      54 .. 0.83
   2 ?    9.4   0.1   0.00056       1.7      19      59 ..     406     443 ..     404     447 .. 0.84
   3 ?   -0.2   0.0      0.55   1.6e+03       2      23 ..     461     482 ..     460     485 .. 0.71
   4 ?   -0.0   0.0      0.49   1.5e+03      40      59 ..     628     647 ..     626     652 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.4
      TPR_16 12 dyddAaaaleaalkrdp 28
                d++ A++a + +l++++
  CCD23534.1 33 DFEIALRAMDYVLDDRA 49
                89999999999999884 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00056
      TPR_16  19 aleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                 al + ++++   P  a +ll+ ++++  +grl+eA+al ++
  CCD23534.1 406 ALLQSRALF---PNSALWLLNEARMLSGKGRLEEAVALMDS 443
                 444556666...99**********************99875 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.55
      TPR_16   2 alaraalragdyddAaaaleaa 23 
                 ++a+ ++ + +yd+Aa+ l  +
  CCD23534.1 461 DRANTLVHLHEYDRAAEDLLSL 482
                 6677778888888888877555 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.49
      TPR_16  40 lgdaalrqgrlaeAaalyra 59 
                 l +++ r+g+++e a+l+++
  CCD23534.1 628 LSLVFRRLGDVQEGADLLDK 647
                 67889999999999988765 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.3      0.95   2.8e+03      37      57 ..      87     107 ..      81     115 .. 0.75
   2 ?    9.2   0.1   0.00056       1.7      13      51 ..     402     444 ..     401     447 .. 0.75
   3 ?   -1.7   0.0       1.5   4.4e+03      31      46 ..     462     477 ..     456     484 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.95
      TPR_19  37 algqldeAealLdalpeedpd 57 
                 ++ + ++A a+L+++ +   +
  CCD23534.1  87 EAEEMKKASATLAKAENLSLK 107
                 678999******998877666 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00056
      TPR_19  13 lleqal....qedpknaearllLAeallalgqldeAealLdal 51 
                 +le al    +  p++a  +l+ A+ l   g+l+eA al+d +
  CCD23534.1 402 ILEDALlqsrALFPNSALWLLNEARMLSGKGRLEEAVALMDSI 444
                 56666622224577777777777*****************987 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.5
      TPR_19  31 LAeallalgqldeAea 46 
                  A+ l+ l ++d A +
  CCD23534.1 462 RANTLVHLHEYDRAAE 477
                 6999999999999976 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.8   5.5e+03       9      46 ..      39      70 ..      35      73 .. 0.72
   2 ?   -2.8   0.1       2.8   8.2e+03      20      36 ..      99     115 ..      92     118 .. 0.82
   3 ?    7.5   0.0    0.0017         5      24      67 ..     401     440 ..     400     443 .. 0.85
   4 ?   -0.8   0.1      0.64   1.9e+03       8      31 ..     461     484 ..     456     486 .. 0.77
   5 ?   -0.9   0.0       0.7   2.1e+03       8      27 ..     627     646 ..     621     647 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.8
      TPR_12  9 laavlrrlgrydeAlellekaleiarrllGpdhpltat 46
                +a+ +    r +  l+ll+++    ++  G dh  t++
  CCD23534.1 39 RAMDYVLDDRAENGLRLLNES----EEKDGSDH--TIN 70
                567777778888888888888....77778888..665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.8
      TPR_12  20 deAlellekaleiarrl 36 
                 ++A+ l  k++++a++l
  CCD23534.1  99 AKAENLSLKSRQRAQKL 115
                 68889999999999887 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0017
      TPR_12  24 ellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67 
                 ++le al + r+l+ p+    a  l n +r+++  gr+eeA++l
  CCD23534.1 401 KILEDALLQSRALF-PN---SALWLLNEARMLSGKGRLEEAVAL 440
                 57788888888776.66...599******************987 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.64
      TPR_12   8 nlaavlrrlgrydeAlellekale 31 
                  +a++l +l +yd A e l   le
  CCD23534.1 461 DRANTLVHLHEYDRAAEDLLSLLE 484
                 578999999999999888777666 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 0.7
      TPR_12   8 nlaavlrrlgrydeAlelle 27 
                  l +v rrlg+ +e  +ll+
  CCD23534.1 627 LLSLVFRRLGDVQEGADLLD 646
                 58889999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5040.57
//
Query:       CCD23535.1  [L=850]
Description: hypothetical protein NDAI_0B05020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   15.5   0.2      0.051   13.5   0.2    2.1  1  EF-hand_4  Cytoskeletal-regulatory complex EF hand
      0.042   13.4   0.0       0.11   12.1   0.0    1.8  1  EF-hand_1  EF hand


Domain annotation for each model (and alignments):
>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   5.7e-06     0.051      24      78 ..     735     789 ..     727     811 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.7e-06
   EF-hand_4  24 nkltgdkvapvlknskleedklekiwdladidedgkldfeefciamrlifdlvng 78 
                   + +  v  +   s+l+ d l +i++  d  +dg+ld + f++ m l+   + g
  CCD23535.1 735 GLILNLVVKDIWSRSNLPFDLLGQIFEKVDTRKDGTLDRKSFIVGMWLVDQCLYG 789
                 55556667889999********************************998766654 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.2e-05      0.11       4      26 ..     758     780 ..     755     783 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.2e-05
                 HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkell 26 
                 +iF+++D+ +dG++d++ f+  +
  CCD23535.1 758 QIFEKVDTRKDGTLDRKSFIVGM 780
                 89**************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3985  (0.222266); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.21u 0.34s 00:00:01.55 Elapsed: 00:00:00.51
# Mc/sec: 5009.64
//
Query:       CCD23536.1  [L=189]
Description: hypothetical protein NDAI_0B05030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-10   39.0   0.4    6.5e-10   39.0   0.4    2.2  2  Vps51     Vps51/Vps67
     0.0043   17.4   0.4     0.0051   17.2   0.4    1.2  1  DUF4050   Protein of unknown function (DUF4050)
  ------ inclusion threshold ------
      0.037   12.6   0.3      0.052   12.1   0.3    1.1  1  Zw10      Centromere/kinetochore Zw10
       0.05   13.7   0.0      0.055   13.6   0.0    1.2  1  Erf4      Golgin subfamily A member 7/ERF4 family
        1.4    7.1   6.0        1.8    6.8   6.0    1.1  1  CDC45     CDC45-like protein
        9.6    6.6   9.3         53    4.2   9.1    2.3  1  HBS1_N    HBS1 N-terminus


Domain annotation for each model (and alignments):
>> Vps51  Vps51/Vps67
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.47   1.4e+03      21      42 ..      13      34 ..       2      40 .. 0.64
   2 !   39.0   0.4   2.2e-13   6.5e-10      16      62 ..     121     167 ..     114     187 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.47
       Vps51 21 lkellkveasllseiraldsel 42
                +  l k +++ll+e  +lds+ 
  CCD23536.1 13 VNRLSKDRRQLLKEYYNLDSDA 34
                4666677777777777777765 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 2.2e-13
       Vps51  16 lakstlkellkveasllseiraldselkalVydnYskLisasdtIrk 62 
                 ++  t kel+++++sll+ ++++++++k+++ydnY++Li++++ +++
  CCD23536.1 121 ISDLTFKELIHIHNSLLKRETETNNSIKNTIYDNYYDLIKVNNLLKD 167
                 567899***********************************998875 PP

>> DUF4050  Protein of unknown function (DUF4050)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.4   1.7e-06    0.0051      83     152 ..      69     159 ..       7     174 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.7e-06
     DUF4050  83 s.....................ealeeqsaessssssasatattspas..........seeseeeesvetlvPvappllppsnpirasItpasYpsiYs 150
                 +                     +++++++ae ++  +          s          +++  ++   + l+ + ++ll+ +    +sI+ ++Y + Y+
  CCD23536.1  69 EgseegerrtmkegdeegkeegDRTSSEDAEGRKDRT----------SglsgststplEDKPISDLTFKELIHIHNSLLKRETETNNSIKNTIYDNYYD 157
                 0222222222322222222222333333333333333..........1444444455588888999999***************************997 PP

     DUF4050 151 kl 152
                  +
  CCD23536.1 158 LI 159
                 44 PP

>> Zw10  Centromere/kinetochore Zw10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   1.7e-05     0.052      16      69 ..     133     184 ..     122     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.7e-05
        Zw10  16 isklekkveeikeevskmivkkYseflelsssaeellerveslskeidalkkkv 69 
                  + l k+  e+ +++ ++i+++Y ++++++++ ++++++ +   +ei  lk+++
  CCD23536.1 133 HNSLLKRETETNNSIKNTIYDNYYDLIKVNNLLKDVVKQGQ--GQEIMELKRCI 184
                 57899********************************9976..45666666665 PP

>> Erf4  Golgin subfamily A member 7/ERF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.8e-05     0.055      23      93 ..     114     188 ..      52     189 .] 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
        Erf4  23 peLsgy.iseeefeeiinkiNeilaeafspys..vrnildnvlglltly.lwslvlkthykkklkklekyieelN 93 
                 + L+++ is  +f+e+i+  N+ l+++ ++ +  + +i dn  +l+ ++ l+++v+k+   +++ +l++ i+ lN
  CCD23536.1 114 TPLEDKpISDLTFKELIHIHNSLLKRETETNNsiKNTIYDNYYDLIKVNnLLKDVVKQGQGQEIMELKRCIDLLN 188
                 4577788*****************999887662256799******988669*********************999 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.0   0.00059       1.8     122     221 ..      26     157 ..       9     163 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00059
       CDC45 122 ayealeeeeesdeede..........eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee..sddddersrkrrrse............. 195
                 +y++l+++ +s    +          ++ +e+  ++ e  +  e++e+ +e++e+++ k+ +++ +e e  ++++++ + +++r++             
  CCD23536.1  26 EYYNLDSDANS----QianppptigdNKADEEVMTSMETIRPMEEGEEGSEEGERRTMKEGDEEGKE-EgdRTSSEDAEGRKDRTSglsgststpledk 119
                 34444444444....2333455443111112222222222222222222233333222222222222.1333333333344444446777777776666 PP

       CDC45 196 ............psakklrrqlkkerrkyeavlekyys 221
                              +++ l+r+++++++ ++++ ++yy+
  CCD23536.1 120 pisdltfkelihIHNSLLKRETETNNSIKNTIYDNYYD 157
                 66667776666445555555566666666666666665 PP

>> HBS1_N  HBS1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   9.1     0.018        53      29      70 ..     129     166 ..      61     173 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.018
      HBS1_N  29 ldevrevLgeeaskvtvtekqikeAlwkyyyDvekaldylln 70 
                 l ++ + L + + +   t++ ik +++++yyD  k  + ll+
  CCD23536.1 129 LIHIHNSLLKRETE---TNNSIKNTIYDNYYDLIKV-NNLLK 166
                 57888888844444...***************9884.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1262.67
//
Query:       CCD23537.1  [L=1133]
Description: hypothetical protein NDAI_0B05040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.8e-12   46.8   0.1    3.8e-12   46.8   0.1    4.5  5  Arrestin_C  Arrestin (or S-antigen), C-terminal domain
    1.9e-08   34.5   6.4    1.7e-06   28.2   0.4    3.2  3  Arrestin_N  Arrestin (or S-antigen), N-terminal domain


Domain annotation for each model (and alignments):
>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.3    0.0099        89      45     115 ..     261     352 ..     245     365 .. 0.68
   2 !   46.8   0.1   4.3e-16   3.8e-12       1     131 [.     368     537 ..     368     539 .. 0.78
   3 ?   -3.3   2.3       1.3   1.2e+04      76      76 ..     710     710 ..     638     794 .. 0.57
   4 ?   -0.8   0.0      0.21   1.9e+03      55      55 ..     913     913 ..     796    1009 .. 0.59
   5 ?   -3.9   0.0         2   1.8e+04      75      95 ..    1064    1081 ..    1036    1105 .. 0.67

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0099
                 EEEEEESS.....SEEEEEEEEEE.EEE---B-TTEE.EEEEEEE.----B-----..................S---EEEEEEEEEEEEEEE CS
  Arrestin_C  45 qhvdvcafnr...snkkeknvvak.sdsvkvtsaakdkletevelqiPeeltpssa..................rnvelikvsYklkvkltls 115
                 q+++  ++n+   +n+++k  +++   ++++  +++d +  ++e  iP+++++s +                    +++i+ ++ +k++ t s
  CCD23537.1 261 QQYTTNSNNNntnNNNNTKISSSSiLSNETFIFEPGDYIY-TFEYPIPDSFPESLKstfgfvnyqlianierygVFKSNISARHNVKLVRTPS 352
                 4445555544775566666666666677777777777666.6889999777775533347777777777777777888888888888776655 PP

  == domain 2  score: 46.8 bits;  conditional E-value: 4.3e-16
                 ----EEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEEESS....................SEEEEEEEEEEEEE---.......... CS
  Arrestin_C   1 wdgkvsleaslpkkgyvpGetipvtvkidndskkkvkkikvslvqhvdvcafnr..................snkkeknvvaksdsvkv.......... 71 
                 w++++++++++ +k ++    +p+ +++ ++ k+++++i++ l++  d+ ++n+                                  +          
  CCD23537.1 368 WKDQLHYDIVVASKDIILDAFLPIAFNLSPLDKVTLHRIRIYLTESMDYYCRNKkvhrmeptrkyllaehngP---------------Lidqgklspnn 451
                 99**************************************************999976555444444444440...............23555555555 PP

                 ..............B-TTEE.EEE..EEEE.--......--B-----S---EEEEEEEEEEEEEEE.....S.SEEEEEEEEEEEEEB CS
  Arrestin_C  72 ..............tsaakdklet..evelqiP......eeltpssarnvelikvsYklkvkltls.....g.sggelslelPivlgs 131
                               +++++d +++  e+++ iP      e+l p++    e+ik ++++ ++l+ls     + +++e+ +++Pi++++
  CCD23537.1 452 lktpkakflgnllkDEKSGDLINKefEYQIFIPtilqnnEKLHPDT--GFENIKSNHWINLCLRLShiidgKrRHFEVNIDSPIHVLN 537
                 5555556666667644444444440046667778888888888888..9********************97579***********976 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.3
                 E CS
  Arrestin_C  76 k 76 
                 +
  CCD23537.1 710 S 710
                 1 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.21
                 S CS
  Arrestin_C  55 s 55 
                 +
  CCD23537.1 913 R 913
                 1 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 2
                  TEE.EEEEEEE.----B--.-- CS
  Arrestin_C   75 akdkletevelqiPeeltp.ss 95  
                  +++ ++    lq P elt+ +s
  CCD23537.1 1064 KQQGWH---PLQTP-ELTSiTS 1081
                  334455...78888.8877532 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00029       2.6      19      79 ..      63     125 ..      57     145 .. 0.68
   2 !   28.2   0.4   1.9e-10   1.7e-06      58     134 ..     262     342 ..     231     351 .. 0.64
   3 ?   -2.7   1.1      0.61   5.4e+03      54      77 ..     833     857 ..     809     879 .. 0.51

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00029
                 EEEEEE-CCCCTT.CEEEEEEEEEEEESSSSTTTT..CCCEEEEEEEEEEEEESTSSSSS.SS CS
  Arrestin_N  19 dGkvlleteelkkarkvkielsgkartgweeseva..gktfrkdltlkkkqeyleteksllks 79 
                  G+ +++  ++ k++k++++++g++rt+w e      +++++ +  ++ +  +++ e+  ++ 
  CCD23537.1  63 RGSLIIRVLKPNKIKKINLNFKGYTRTEWPEGIPPkkDEYTEIHDIVNHTWPFYNAETDTYTI 125
                 7999999**********************8643222234444444444445566655555555 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 1.9e-10
                 EEEEEEEEEEEESTSSSSS.SSSSHHHHH...HHH-TTEEEEEE---TTS--SECSGEEEEEEEEEEEEECCC..E--C.CC CS
  Arrestin_N  58 rkdltlkkkqeyleteksllkskkdsqek...LpkGehafpFsfelPknlpsSfeGkaggvrYevkvtldrpw..kidkkkk 134
                 +++++ +++ +  + ++++ +s   s+ +   ++ G+++++F + +P++ p S+++++g v+Y++ + ++r    k++ +++
  CCD23537.1 262 QYTTNSNNNNTNNNNNTKISSSSILSN-EtfiFEPGDYIYTFEYPIPDSFPESLKSTFGFVNYQLIANIERYGvfKSNISAR 342
                 222333332222233333333322223.2354666************************************99554444444 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.61
                 CCCEEEEEEEEEE.EEESTSSSSS. CS
  Arrestin_N  54 gktfrkdltlkkk.qeyleteksll 77 
                 +++ +++++ +++  +y +++k++ 
  CCD23537.1 833 QQQQHYRRQTNTSlHSYSSSSKMMK 857
                 2222222222222123333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2284  (0.127391); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.04u 0.32s 00:00:01.36 Elapsed: 00:00:00.49
# Mc/sec: 6968.14
//
Query:       CCD23538.1  [L=335]
Description: hypothetical protein NDAI_0B05050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-48  165.4  35.7    2.5e-48  165.2  35.7    1.0  1  NTR2      Nineteen complex-related protein 2


Domain annotation for each model (and alignments):
>> NTR2  Nineteen complex-related protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.2  35.7   1.4e-52   2.5e-48       4     310 .]       2     326 ..       1     326 [. 0.80

  Alignments for each domain:
  == domain 1  score: 165.2 bits;  conditional E-value: 1.4e-52
        NTR2   4 kkRnkiklPsssaeeleldisk.....nkkiqqikpsvledledeeddis.....elqPlkfkkvpkrditvdltdeqavkendseYkdlykskee... 89 
                 +kRnkikl  s+ ++++ +  +     +    ++kps+le  ++++dd +     +l P+ fkk  k++i+++ +     +   ++Y++++++++    
  CCD23538.1   2 QKRNKIKLHFSNGDDVNDNSENtdllpKFGASKVKPSFLEHDDEDDDDDEgdyedKLSPIIFKK-NKNKISFNDQSSSSEPVVRTQYSGIFNQRKRipe 99 
                 79******9887777665443300111345689****9987766666655588889******98.6999***9444444445689*********98999 PP

        NTR2  90 .....vskddvkiLnleD....kelleeldeagsdseeeevPtkeeiekikkrksilRR...nlekedriserdYvkLLdkedkldlmetikknGGlkk 176
                      +  +d++iLnleD    +e +e +d   +d++ + +  k  ie+ikk++++ RR    ++ + + +e++YvkLLdk+dkl+lm+ ikknGG++k
  CCD23538.1 100 nngerKVEQDIRILNLEDmsdeEEEVELSD-DEDDNNPD-ILNKSRIEEIKKQREKNRRmygSFNSNGKLKEKEYVKLLDKDDKLELMDMIKKNGGVQK 196
                 999876679*********766545555554.33333333.459***************94445788********************************* PP

        NTR2 177 anekeienfsdd.eledfeDekLeLtesqisiqkdekReiieeaindv..ayrvndewekqlLskgnllidlkdneekitkLPiLfdsdeddedeieli 272
                 +nek++ +  d+  +++feDe+L Lte  ++ qkd+kRe+i  a++ +  +   +++we++++sk     d+ +      +LPiL  ++e +ed    +
  CCD23538.1 197 RNEKDMLD--DGfAMHEFEDEQLGLTEKELQLQKDKKRENIRRALGTEsgSDSNGENWETNIVSKVVGG-DILKDTY-AMQLPILLRDNEFEED---SL 288
                 *****555..5547*******************************86522567899********96655.5444333.579****987766555...68 PP

        NTR2 273 semvskitlqrkkvelrleaLekqkvdlleekakLlkk 310
                 s+ + k +l+ kkv+l+l  ++k+k  l ++++ Ll k
  CCD23538.1 289 SSELFKTKLETKKVRLQLTGMKKEKESLDNKRDILLSK 326
                 8899*****************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1502  (0.0837749); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2485.84
//
Query:       CCD23539.1  [L=986]
Description: hypothetical protein NDAI_0B05060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.5e-173  575.5  10.5   9.5e-173  575.5  10.5    3.9  4  SAPS      SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.9   7.7         1   1.8e+04     286     304 ..      53     163 ..      19     217 .. 0.43
   2 !  575.5  10.5  5.3e-177  9.5e-173       1     488 [.     257     745 ..     257     746 .. 0.90
   3 ?   -7.4   8.3         1   1.8e+04     278     332 ..     770     822 ..     750     850 .. 0.42
   4 ?   -3.3   9.3      0.16   2.9e+03     241     324 ..     852     964 ..     839     983 .. 0.45

  Alignments for each domain:
  == domain 1  score: -6.9 bits;  conditional E-value: 1
        SAPS 286 ltdkdedvsleesksakd................................................................................. 303
                 +t++ ++vs+++++++                                                                                   
  CCD23539.1  53 VTENAKEVSHDNEQEEPLptdeaeyinykpnlnilnellddeelytelmcsnfklliylkypevltklveyvtsetilkepveptteaeiaeeliesai 151
                 444444444444444333444444444444444444444444444444444444444444444444444444444444444444444444444443333 PP

        SAPS 304 ...........e 304
                            +
  CCD23539.1 152 vvdpsesegedT 163
                 333333322221 PP

  == domain 2  score: 575.5 bits;  conditional E-value: 5.3e-177
        SAPS   1 nenLldrkteemleFiksqenivekflkhidtpaimdlLlkiIstektesgtgiiewlksqdLisklldlLspeesediqssasdfLkaiItisanata 99 
                 ne+Lld++ + ml+ i + + +v++fl+h+d+p++md+Llk+Ist+k+e +tg+++ lk+qdLi+klld L++++s  +qs+a+dfLka +t+san+++
  CCD23539.1 257 NERLLDMDITGMLQCILNLDTLVDRFLTHVDNPSLMDFLLKVISTDKPEAPTGVLNQLKEQDLIPKLLDRLDTNYSVATQSAAGDFLKAFVTLSANSNN 355
                 799************************************************************************************************ PP

        SAPS 100 nlqssigpneLtreLvseeivekLikimlkgksgsalvngvgiiielirknnsdydeenllytsleedppsmrdpiylghlLrlfsehlkdfqqlllep 198
                 +l s+igpneLtr+Lvs++++ekLi+imlkg  g++l+ngvgiiielirknnsdyd +++ yt+l+++pp++rdpi+l h+++lf++ +++f+++l + 
  CCD23539.1 356 ELASGIGPNELTRQLVSPKMMEKLIQIMLKG--GTSLSNGVGIIIELIRKNNSDYDFVQVIYTTLQSHPPNDRDPIHLIHMIKLFAKYMPQFNEMLIKR 452
                 *******************************..****************************************************************** PP

        SAPS 199 keksklettlgekiepLGfeRfkiveLiaeLLhcsnmallnekkgeeivkerDevrerlleel..tseeealedvsdeaskeesaesedltdkdedvsl 295
                 k + +let++ge iepLGfeRfki+eL+aeLLhcsnm+llne +ge ivkerD +re + + +  ++   a +d ++++ ke + + ++l+ ++ + ++
  CCD23539.1 453 KLP-QLETAFGE-IEPLGFERFKICELVAELLHCSNMTLLNELEGEAIVKERDDERELQIRANdnNNVVVATDDEINTNGKEVTGKLNNLELSNGEPEK 549
                 *99.********.********************************************888765222223333444444444444444444444444444 PP

        SAPS 296 eesksakdenkesdesesdtaeesseededdasseesalaeeteeklrkkpvvGDlLKiklvelkilptiLdlFfkYpwNNfLHnvVydivqqilngkm 394
                 e+++++++ ++ +d+ +s+  + +++ ++ ++ +e+  ++eete +lr++ v GD+LKi+l +++i++tiL++Ff+++wNNfLHnvV+divqqi+ng++
  CCD23539.1 550 ETEEEENAGEQAEDADDSKMGDANEDIENAEIYNETLSDSEETERSLRENSVPGDQLKIALQDTEIIKTILNMFFQFEWNNFLHNVVFDIVQQIFNGPL 648
                 444444443333333333333334444455566666679************************************************************ PP

        SAPS 395 drgynrfLavdLfekaklterilegqkesdesqaekkirlGYmGHltlIAeevvkfleryppells...eeieekleneeWeeyveetLeetreken 488
                 ++gynrfL++dL++k k+t +++eg+++++e  +++++r GYmGHl+lIAee+ kf+e+++++ +s   + + ++++++ W++yv+++L++trek+n
  CCD23539.1 649 KTGYNRFLLTDLLTKTKITHMVIEGNRRCEEQTRKTGLRTGYMGHLVLIAEEIAKFIEYIDEMKVSftnPAVVASFNEPSWINYVDTILTDTREKYN 745
                 **********************************99**********************9999888777799*************************9 PP

  == domain 3  score: -7.4 bits;  conditional E-value: 1
        SAPS 278 eesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdassees 332
                 + +++ e+ + +de++++ +s++ +    ++ + ++d+++++++ed+ d+ +ee 
  CCD23539.1 770 PIDNNMEEDEANDESTNHINSGNIDLY--YNYDYDNDNDSQHDDEDSADIDDEER 822
                 333333333333444444444443332..22222222222222222222222222 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 0.16
        SAPS 241 kkgeeivkerDevrerlleeltseeealedvs......deaskeesaesedltdkdedvsleesksakd..........................enke 307
                  k++ei +e+D+  + ++++l    ++++d+       ++  +ee+ +s+ ++++++ +++e+ ++++                           ++++
  CCD23539.1 852 DKSQEILEEDDKFSKYMSHHL---GKGFTDTYdvigtnSQGLTEEDWNSHGTKKNMTGIQHEKGSKENSaymdstipsndftartkhysepelqdDESS 947
                 478999999999999999888...444444444444442222222222222333333333332222222333333333333332222222334432222 PP

        SAPS 308 sdesesdtaeesseede 324
                 +d+s++ ++e++   d+
  CCD23539.1 948 DDSSPELDDEDDMIIDD 964
                 22333322222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (986 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1102  (0.0614647); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 6698.74
//
Query:       CCD23540.1  [L=835]
Description: hypothetical protein NDAI_0B05070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-44  150.4  10.5    4.1e-34  118.3   7.2    2.3  2  ChAPs     ChAPs (Chs5p-Arf1p-binding proteins)
     0.0002   21.0   0.9    0.00053   19.7   0.9    1.8  1  TPR_1     Tetratricopeptide repeat
    0.00025   21.5   0.0    0.00055   20.4   0.0    1.5  1  TPR_19    Tetratricopeptide repeat
     0.0013   18.9   1.5     0.0052   17.0   1.5    2.1  1  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
     0.0086   16.1   0.2      0.043   13.9   0.5    2.1  2  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.0   0.2      0.047   14.1   0.2    2.2  1  TPR_17    Tetratricopeptide repeat
      0.045   14.0   0.5       0.19   12.0   0.5    2.1  1  TPR_8     Tetratricopeptide repeat
        2.6    8.3   5.0         16    5.8   3.0    2.8  2  DUF5470   Family of unknown function (DUF5470)


Domain annotation for each model (and alignments):
>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   7.2   1.8e-37   4.1e-34       3     321 ..     139     497 ..     137     554 .. 0.72
   2 !   33.2   0.1   1.3e-11   2.8e-08     337     395 .]     579     640 ..     566     640 .. 0.70

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 1.8e-37
                 XXEEEEEEEXXXXSXHHHHHHHHHHHHCCS.SSSXXXTTSXXXXXECCE......EEEEEEETTTTEEEEEEEESSXXEEEEEEETTSXBEEX...... CS
       ChAPs   3 eiGtyfyvtGvdtSssasiavylkqltesl.seksqlwFgkkktfkvsk......isyctyNaFskvDvrvevkiPGsvesyvvdergekeea...... 88 
                 +iG yf++tG+d S+      +lk l++s  s++s++  + +++ ++++       sy+++N+FskvD+r++ k     ++ ++  + + ++       
  CCD23540.1 139 NIGEYFHITGIDCSNELMPLSFLKLLNSSSlSSSSSTSNSATASSHIKHntnddiSSYSCFNIFSKVDLRLNYKSESIYQINLIKYHEKITSLgnkkie 237
                 69*************887777888776544133333333333333333311113257*******************99999999988877333444455 PP

                 ......HHHHHHHHHHHHHHHHHHHHHTTTTTTS----TTEEE--GGG--SSS-H.HHHHHHTHHHHTTCGGGG---TT-SS--SSSSHHHHHHHHHHH CS
       ChAPs  89 ......tdelWaEtflsgvlRsllladdnadddevqklvetrklnPltsgelekk.aelFlkafeklfekgvklgadsevqvptlvnNyLvetllklvr 180
                       +de+W+E f+s+++Rsl++ +d ++     + +  ++  P+ + + e+   e+  + ++++ e g+ +   ++   pt++ NyL+e+ll +++
  CCD23540.1 238 eqilqlNDEIWLECFVSNIIRSLIINND-KE-----RQIPILIQYPVFQKNNENFlVETLCQFIPRFSECGWDS---TKSAFPTIIHNYLTEALLIYLK 327
                 667777*******************999.33.....45566777788877777664555666666666666654...34567***************** PP

                 HH.T-HHHHHHHHHHHHTT-.GGGHH..HHHHHHHHTT...-HHHHHHHHHHHH.........-SSS-H............HHHHHHHHHHHHHSS--H CS
       ChAPs 181 lt.krydralellekLkeee.pevvi..llarvlllad...eEvdavkllneel.........eeeekd............aelLllqaefllskkkee 251
                 l  k ++++l+ l+kL +   p+ ++   ++ + ++++    E++ ++ +++ l         ++++++            + lL  q++fll+kk+ +
  CCD23540.1 328 LNpKLINHTLNHLKKLSDIMdPHNATyyKIISIAIMNQngqMELQLINSIHNLLetlfhklysQSNKQShshisvqlinciTILLNYQTNFLLKKKDIT 426
                 97366899********9875454433114555666654122699999999999999999999855555578999****999999*************** PP

                 HHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHHHHT----.SS--------SS-------EB--- CS
       ChAPs 252 lAlevakravksaPsefktWalLvkvYikledienALltLNscPmf.tykekdvlrriapakseddlhlPl 321
                  Al++ak  ++++   f  W+ L+++Yi++++++ AL+++Ns+P   + + k +l+  +p +  +  + P+
  CCD23540.1 427 TALQIAKYCTNLSSDSFYSWYNLANCYIHMKQYDLALIAINSLPFLpPTNIKKQLQSFQPSTYFKRPNSPT 497
                 ********************************************985455566666666655333333333 PP

  == domain 2  score: 33.2 bits;  conditional E-value: 1.3e-11
                 -SS---S---HHHHT-TTTT--.HH..HHHHHHHHHHHHHHH-HHHHHHHHHHHB-XXXXXX CS
       ChAPs 337 evteeqkevdpsLlrlkaanlk.st..fakaYelLteivkkiGWeeLLkvRskvFvmeeEYr 395
                 e ++ +++ + sLl  ++   + s+  ++k+ +lL +i+++iGW+eLL++R + Fvme EY+
  CCD23540.1 579 EFNSIKNTNNASLLLKRSMETRqSSfiYEKISHLLIKIINEIGWNELLQIRGRTFVMEREYN 640
                 444444444445444444443314423689*******************************5 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.9   2.4e-07   0.00053       2      21 ..     444     463 ..     443     467 .. 0.92

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.4e-07
                 HHHHHHHHHHHHTT-HHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAl 21 
                 +++ynl+n+y ++++yd Al
  CCD23540.1 444 YSWYNLANCYIHMKQYDLAL 463
                 58*****************8 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.4e-07   0.00055       1      52 [.     419     470 ..     419     478 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.4e-07
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 ll+ +d + Al++ ++    + ++ + +++LA++++ ++q+d A  +++ lp
  CCD23540.1 419 LLKKKDITTALQIAKYCTNLSSDSFYSWYNLANCYIHMKQYDLALIAINSLP 470
                 68899***************************************98888877 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.5   2.3e-06    0.0052      31      79 ..     417     466 ..     382     469 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.3e-06
                 HHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  31 lclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaL 79 
                   l++ ++ ++A+++++ + +l s s  ++y +A c++ +k+y+ A+ a+
  CCD23540.1 417 NFLLKKKDITTALQIAKYCtNLSSDSFYSWYNLANCYIHMKQYDLALIAI 466
                 578999**************************************999876 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5   1.9e-05     0.043       3      23 ..     445     465 ..     443     467 .. 0.89
   2 ?   -2.7   0.0         4   8.9e+03       3      27 ..     690     714 ..     688     716 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.9e-05
       TPR_2   3 alynlGlayyklgdyeeAlea 23 
                  +ynl+++y+++++y+ Al a
  CCD23540.1 445 SWYNLANCYIHMKQYDLALIA 465
                 7****************9865 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4
       TPR_2   3 alynlGlayyklgdyeeAleafekA 27 
                  +  lGl  ++   +e+ + +++ +
  CCD23540.1 690 EWQLLGLTMFRVWYLEQGISCLRTS 714
                 6889999999888888888887766 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   2.1e-05     0.047       5      33 ..     435     463 ..     431     464 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtAr 33 
                 +  l  +++++++nLA+++ + ++++ A+
  CCD23540.1 435 CTNLSSDSFYSWYNLANCYIHMKQYDLAL 463
                 55677899*****************9985 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.5   8.4e-05      0.19       3      23 ..     445     465 ..     443     468 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8.4e-05
                 HHHHHHHHHHHTT-HHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkey 23 
                 ++ynl+++y+ +++y+ A  +
  CCD23540.1 445 SWYNLANCYIHMKQYDLALIA 465
                 8****************9766 PP

>> DUF5470  Family of unknown function (DUF5470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.0    0.0069        16      19      36 ..     165     182 ..     162     210 .. 0.76
   2 ?    0.7   0.0      0.26   5.9e+02       7      28 ..     725     746 ..     721     753 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0069
     DUF5470  19 ksssvssssstGasakls 36 
                  sss+ssssst  sa  s
  CCD23540.1 165 NSSSLSSSSSTSNSATAS 182
                 69************9876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.26
     DUF5470   7 Gkiientveskyksssvsssss 28 
                  ki++  +e  y   s sssss
  CCD23540.1 725 EKILQLYLERDYEMDSQSSSSS 746
                 689999999**********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (835 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1158  (0.0645881); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 6064.88
//
Query:       CCD23541.1  [L=669]
Description: hypothetical protein NDAI_0B05080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-151  503.3   0.1   5.9e-151  503.0   0.1    1.1  1  GCS        Glutamate-cysteine ligase
  ------ inclusion threshold ------
        0.1   12.9   1.8         21    5.5   0.0    3.1  3  Rep_Org_C  Putative replisome organiser protein C-terminus


Domain annotation for each model (and alignments):
>> GCS  Glutamate-cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.0   0.1  6.6e-155  5.9e-151       1     365 []     247     638 ..     247     638 .. 0.94

  Alignments for each domain:
  == domain 1  score: 503.0 bits;  conditional E-value: 6.6e-155
         GCS   1 iymDamgfGmGsccLQvtfqaknieearllYdqlaplaPillalsaaspiykGlladvdvrwnvisasvDdrteeErgeep................lk 83 
                 iy+DamgfGmGs+cLQ tfqa++i++ar+lYd+l+++aPi+la saa+p++kG+lad+dvrwnvis++vD+rt++Er+  p                 +
  CCD23541.1 247 IYLDAMGFGMGSSCLQNTFQAPDIDKARYLYDSLCNFAPIFLAASAAAPAFKGWLADQDVRWNVISGAVDCRTPRERNVPPllpkfnkdglggldevAS 345
                 9*******************************************************************************9877766666666665433 PP

         GCS  84 nekkripksrydsvdlylseekrlreeyndlelpldeevlkklleag...vdellakhiahlfirdplvifeekieqddekstdhFeniqstnWqtlrf 179
                 ++ ++ipksry+ vdlyl+ +k+++++ nd+e+p++e++lk+lle++   +d++lakh+ahlfirdp+++fee+i+qd+++st+hFen+qstnWq+lrf
  CCD23541.1 346 KHVQKIPKSRYSCVDLYLGGNKFFNRTLNDTEVPINEKILKRLLENDkapLDYDLAKHFAHLFIRDPISVFEESINQDNKTSTNHFENLQSTNWQSLRF 444
                 34499*****************************************88889************************************************ PP

         GCS 180 KpPp.....pesekigWrvefRpmevqltdfenaafsvfivLltrvilsf..klnfyipiskvdenmkrAhkrdavleekfyfrkniakkeeaaekake 271
                 KpP+     ++++ +gWrvefRp+evqltdfenaa+s+fi+L+++++l+f  k+n yip+s++++nm++Ah+rda+l+ekfy++++i + +       +
  CCD23541.1 445 KPPTqeaipSNKNVPGWRVEFRPLEVQLTDFENAAYSTFIYLIVDCLLTFsdKINNYIPMSQIWDNMHTAHHRDAILNEKFYWKDSIDSLDF------K 537
                 ****88885558899***********************************999********************************9998887......5 PP

         GCS 272 ieemtideiingk.egefpglipliesylesvevdv......etrkklekylkliskrasgelltaAkwiRefvakhpdYkkdSvvsdeinydLlkkve 363
                  ++++++ei++ +  g f  +i+ i ++   ++ d       +++ + ++ylklis+r+sg+++t Ak+iR+f+++hpdYk+dS+vs+ in+dL++++e
  CCD23541.1 538 SSKYSMNEIFHDSqMGIFATFINPILKHKGFIQSDWqelkssKEHLRTYYYLKLISDRTSGKIPTIAKYIRNFIMNHPDYKHDSKVSKLINFDLIMACE 636
                 799********987899***********99987754456777899999**************************************************9 PP

         GCS 364 ki 365
                 +i
  CCD23541.1 637 RI 638
                 87 PP

>> Rep_Org_C  Putative replisome organiser protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.003        27       7      38 ..     113     142 ..     110     153 .. 0.77
   2 ?   -1.8   0.0      0.45     4e+03      45      69 ..     524     547 ..     489     572 .. 0.68
   3 ?    5.5   0.0    0.0024        21      16      61 ..     575     620 ..     555     634 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.003
   Rep_Org_C   7 fldsfinfsskniskravalaeflklpsfqke 38 
                 ++d +i+f+ kn+  r +a+ ++ ++p  +k+
  CCD23541.1 113 YMDEYIEFNMKNR--RNLAKFKLDQFPTTKKK 142
                 9***********6..77777777677666655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.45
   Rep_Org_C  45 knyiqsyknehpddkagkysvnaye 69 
                 k y ++ ++   d k+ kys+n + 
  CCD23541.1 524 KFYWKDSID-SLDFKSSKYSMNEIF 547
                 445444443.456678888888763 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0024
   Rep_Org_C  16 skniskravalaeflklpsfqkeqavigaknyiqsyknehpddkag 61 
                 +   sk  + +  +lkl s +    + +   yi++++ +hpd k++
  CCD23541.1 575 ELKSSKEHLRTYYYLKLISDRTSGKIPTIAKYIRNFIMNHPDYKHD 620
                 5567899999999****************************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.22s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 5047.09
//
Query:       CCD23542.1  [L=305]
Description: hypothetical protein NDAI_0B05090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-75  253.5   0.0    2.4e-75  253.4   0.0    1.0  1  IF-2B     Initiation factor 2 subunit family
  ------ inclusion threshold ------
        0.1   12.6   0.1        4.6    7.1   0.0    2.5  2  DeoRC     DeoR C terminal sensor domain


Domain annotation for each model (and alignments):
>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.4   0.0   2.7e-79   2.4e-75       3     282 .]      17     292 ..      15     292 .. 0.97

  Alignments for each domain:
  == domain 1  score: 253.4 bits;  conditional E-value: 2.7e-79
                 -SHHHHHHHHHHHHHHHHHHCCCSTHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHH.HHHCCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       IF-2B   3 rGspaiaiaalevllevikdaktskvaeLkeelrkaidlLkkarPtavslgnairrllk.eiselksssdvkeakksliekikelikeieeadekigdi 100
                 ++++++ iaa+e+l + +k ++  ++ae++++++ ++++L+++ P++vsl+  ++ +++  +++l+ + d++++k++lie+ + +++++++++ ki++i
  CCD23542.1  17 DPEMTMPIAAIEALVTLLKVKNPGTAAEMIRTIKTSTEELIQSIPNSVSLRAGCDIFMRfVLRNLHLYGDWESCKQHLIENGQLFVSRAKRSRDKIAKI 115
                 78899******************************************************87889*********************************** PP

                 HHTTC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEEEXTTTTHHHTHHHHHHHTTXEEEEEEGGGHHHHHHCTESEEEEEXSEEETTSEEEEETTH CS
       IF-2B 101 aaelikdgdtilTicnsktvlevlraaakekkkfkVivvEsrPrlqGrltakeLvqagipvtlitdsavayvmseevdkvivGAdrilenGaiankiGT 199
                 ++++i+d+d+il+++ s++v+++l++aa++  +f+++v+EsrP lqG +++  L+++gipvt+++dsav++v+++ vdkv+vGA++++e G+i+n +GT
  CCD23542.1 116 GIDFITDDDIILVHGFSRAVFSLLKHAAENLIRFRCVVTESRPTLQGTQLYSLLEEKGIPVTMVVDSAVGTVIDK-VDKVFVGAEGVAESGGIINIVGT 213
                 ***************************************************************************.*********************** PP

                 HHHHHHHHHTTXEEEEEXXGGGBESTSSSGGGSSXXBEXTHHHHEETTEESSTTTEEEEEBSEEEEEGGGXSEEEETTEEEXC CS
       IF-2B 200 sslAvlAkefnipvlvvaeslkfservqldedifieerdpeellnitgeriaeeelkvvnpafDvtPpelItliITevGvlpp 282
                 +s+ vlA++++ p++vv+es+kf+++++l+++++   ++  ++++++++     + +++ p++D+t++e+It++IT++Gvl+p
  CCD23542.1 214 YSVGVLAQNARKPFYVVTESHKFVRMFPLSSNDLPINGEFLDFTRRKDDS----QEALRGPIIDYTAQEYITALITDLGVLTP 292
                 *******************************9998888888888887766....468************************98 PP

>> DeoRC  DeoR C terminal sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.012     1e+02       4      26 ..     107     129 ..     104     156 .. 0.87
   2 ?    7.1   0.0   0.00052       4.6      92     142 ..     190     239 ..     175     247 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.012
       DeoRC   4 eeKrrIAkaAaeliedgdtifld 26 
                 + + +IAk  +++i d+d+i++ 
  CCD23542.1 107 RSRDKIAKIGIDFITDDDIILVH 129
                 56889**************9986 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00052
       DeoRC  92 nvdkaflgangidaegglttsdeeeaevkralieaarrvillaDssKfgkr 142
                 +vdk+f+ga+g+ ++gg+++     ++v   + +a +  +++++s Kf + 
  CCD23542.1 190 KVDKVFVGAEGVAESGGIINIV-GTYSVGVLAQNARKPFYVVTESHKFVRM 239
                 68***********998887643.3455554444444457888999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2169.72
//
Query:       CCD23543.1  [L=276]
Description: hypothetical protein NDAI_0B05100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-20   71.8   2.7    1.7e-19   70.4   2.7    1.7  1  Sin_N            Sin-like protein conserved region
  ------ inclusion threshold ------
       0.02   15.8   2.8      0.049   14.6   2.8    1.6  1  tRNA_synt_1c_R2  Glutaminyl-tRNA synthetase, non-specific RNA


Domain annotation for each model (and alignments):
>> Sin_N  Sin-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   2.7   1.9e-23   1.7e-19       1     221 [.      60     261 ..      60     276 .] 0.72

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 1.9e-23
       Sin_N   1 ddDpVveeidVylskslsdkLyllQYPlrpa...drpyddeqvkevrvkpkqqklelelaidtesknydknkgeqlalaadgktkasektfsselmdkq 96 
                 ++Dp++e ++V ++   ++ Ly++QY  +p+   ++p +   + e+r+k+k++  el++++d+ ++ ++++k++ +     gk             + q
  CCD23543.1  60 EEDPIIESFPVNIAG-NNESLYIFQYASKPKvvgKKPAEHPFINEARYKKKSSLWELDIPLDE-NSFFNSDKADGTW----GK------------ANIQ 140
                 89***********87.5678**********9888899999999*******************8.6788888888888....22............2334 PP

       Sin_N  97 tlsssraldasnyavGilkdgelhltPlegilqlrpsfsyldkadkkkkeklsqqeskaeneeqdeeeeeakavtvkfkraeterqkkareqSyallkk 195
                 tl+    +++     +++ +g+++ltP++++ qlrp f+y+d +++++k+++      ++n   ++ ++ a+ vt+++k  +++++ ++   S   +k 
  CCD23543.1 141 TLKGVG-VPNDGQYTAFVANGQIYLTPIKTVAQLRPFFNYIDASNQERKQEEH-----KQN--ASAHSQRAQVVTMSVKS-ANDQTHNRLTGSLLAHKV 230
                 555553.355666679**************************98888884222.....222..23444557889999997.888888888888888877 PP

       Sin_N 196 keeeEp....Wiklevhe.qesseseaerqk 221
                 ++eeE     W + ++++ +e+  +e er  
  CCD23543.1 231 ADEEESealiWAENTYEQfKEDIIKETERTA 261
                 7766542233444444444333333334333 PP

>> tRNA_synt_1c_R2  Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   2.8   5.4e-06     0.049      27      94 ..     185     251 ..     179     252 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.4e-06
  tRNA_synt_1c_R2  27 kkkkkkkkkeekkkaakkakkekeee...esegaetieelegellkfHkpgeNfktdgyvvtpntkelLkk 94 
                      +++k++++k++++++++ a+     +   +s++ +t + l+g+ll  Hk+ ++  ++  ++++nt+e  k+
       CCD23543.1 185 QERKQEEHKQNASAHSQRAQVV---TmsvKSANDQTHNRLTGSLL-AHKVADEEESEALIWAENTYEQFKE 251
                      2222222323333333323322...24558889999999*99665.5*******************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1299  (0.0724525); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2115.36
//
Query:       CCD23544.1  [L=762]
Description: hypothetical protein NDAI_0B05110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-39  135.6   0.0    3.3e-39  134.5   0.0    1.6  1  DEAD        DEAD/DEAH box helicase
    8.6e-18   64.7   0.0    2.9e-17   63.0   0.0    2.0  1  Helicase_C  Helicase conserved C-terminal domain
    1.4e-16   60.5   0.0    3.4e-16   59.2   0.0    1.6  1  DUF4217     Domain of unknown function (DUF4217)
    1.9e-08   34.5   0.4      7e-08   32.7   0.0    2.1  2  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.0   7.3e-43   3.3e-39       1     175 [.     186     379 ..     186     380 .. 0.85

  Alignments for each domain:
  == domain 1  score: 134.5 bits;  conditional E-value: 7.3e-43
                 -HHHHHHHHHHH....TTCEEEEEESTTSSHHHHHHHHHHHHHHHS....TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SEEEEEETTSSHHHH CS
                 xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplil....gggdvlvaaeTGsGKTlaflipvlqivyet....kgktgpkalivePtreLaeqtlnnlkkfkkyid.lrvlliiggvaardq 90 
                 t+iQ+ aip+++    +++d++++a+TGsGKTl +l+p++++++e+    ++k+g  aliv+PtreLa q+++ ++++++ ++ l  +l+igg++++++
  CCD23544.1 186 TNIQKLAIPNLIssnkKNNDLFIHAQTGSGKTLTYLLPIISSILEMeahvDRKSGCFALIVAPTRELASQIYQVASTLTNCCHyLVPCLLIGGERKKSE 284
                 78**********8887779**************************9**999*****************************866588889********** PP

                 HHHHHTTCSEEEEEHHHHHHHHHCTS.SH...CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTT.....SE..EEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xx..xxxxxxxxxxxxxx RF
        DEAD  91 lskldngvdivvgtpgrlddllstgk.ln...lsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklq.....rq..vivlSATlpkdvkk 175
                 +++l++g++++vgtpgr++d+l++ k ++    +++r+lVlDE d+l++ gf+++i+ il+ +++   + + +     ++   +++SATl+  v+k
  CCD23544.1 285 KARLRKGCNFIVGTPGRILDHLQNTKvIReqmGDSLRYLVLDEGDKLMELGFEQTIDDILKIIHEVPINNR-KfpklpSRiiNVLCSATLKGRVTK 379
                 **********************55551446657888*****************999998888855432221.133344335689******966665 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   6.4e-21   2.9e-17      40     111 .]     498     575 ..     429     575 .. 0.87

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 6.4e-21
                 TSTEEEESTTSTHHHHHHHHHHHH......TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  40 gikvavlhgelpqnereeileqfn......kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                 ++ + +lhg+l+q+ r ++l+ f       kg++ ++ +tdva+rG+d+p v++Vi +d+p+  ++  +riGRt+Rag
  CCD23544.1 498 KVLCYKLHGSLSQQMRTQTLKHFAtdndatKGKHLIMFCTDVASRGLDLPYVSTVIEVDPPFAAEDHLHRIGRTARAG 575
                 778999*****************888888889999*****************************************97 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   7.5e-20   3.4e-16       2      60 ..     656     716 ..     655     716 .. 0.96

  Alignments for each domain:
  == domain 1  score: 59.2 bits;  conditional E-value: 7.5e-20
     DUF4217   2 qqkleslcakdrdlkelAqkAfvsyvraYsvhlake..iFrvkkLdlealAksfGLleaPk 60 
                 + ++e+++++d   k+ A+++++s+vraY++h  +e   F+v+ L+l++lAksfGL+e Pk
  CCD23544.1 656 HLNVERRLLEDSTYKNVAMRGYTSHVRAYATHITQEkkFFNVRCLHLGHLAKSFGLRERPK 716
                 67899*******************************************************8 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.5      0.93   4.2e+03      85     117 ..      72      94 ..      26     116 .. 0.52
   2 !   32.7   0.0   1.6e-11     7e-08       4     144 ..     185     331 ..     182     351 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.93
                 GEEEESSS-B--.......-SEEEEEHHHHHHT CS
      ResIII  85 igkkvsgdkkkakekdstnkkilvttiqsldad 117
                 +           + ++s++k+ ++ + +s ++ 
  CCD23544.1  72 HD----------EDSKSNKKRSTMNNNNSRNQT 94 
                 11..........122222222222222222222 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 1.6e-11
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S...........-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee......kflflvprkslleqtleefkkflseayke.igkkvsgdkk 94 
                 + + Q+ ai nl+++   k+++ ++i++ TG+GKTl++ + +i ++l+ +          +l+++p+++l +q ++  + ++++++    +  + g++k
  CCD23544.1 185 PTNIQKLAIPNLISSN--KKNNDLFIHAQTGSGKTLTYlLPIISSILEMEAHVdrksgcFALIVAPTRELASQIYQVASTLTNCCHYLvPCLLIGGERK 281
                 6778999*****9776..69999***************88888888886554489999999**************999999888877775555555555 PP

                 --........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGT CS
      ResIII  95 ka.kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrl 144
                 k+ k++ ++ ++++v t  ++  ++++++  +e+++ d+  +++ DE  +l
  CCD23544.1 282 KSeKARLRKGCNFIVGTPGRILDHLQNTKVIREQMG-DSLRYLVLDEGDKL 331
                 5555568999************99977666655554.55567778886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1289  (0.0718947); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 5128.71
//
Query:       CCD23545.1  [L=533]
Description: hypothetical protein NDAI_0B05120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-21   74.5   6.1    9.2e-21   73.6   6.1    1.4  1  zf-C2HC5        Putative zinc finger motif, C2HC5-type
  ------ inclusion threshold ------
      0.037   14.2   0.4        3.6    7.9   0.1    2.8  2  Ribosomal_L24e  Ribosomal protein L24e


Domain annotation for each model (and alignments):
>> zf-C2HC5  Putative zinc finger motif, C2HC5-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   6.1     1e-24   9.2e-21       2      53 ..     189     241 ..     188     242 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1e-24
    zf-C2HC5   2 kkCnCqatrHpLleaapnClnCGkiiCakegls.kpCsfCgspllsseerqel 53 
                 + CnCq+ rHp++e+apnCl+CGkiiC+kegl+ ++CsfCg++l++  er ++
  CCD23545.1 189 YVCNCQGLRHPIFELAPNCLSCGKIICIKEGLHlNNCSFCGEELIPIGERVQM 241
                 78********************************************9999888 PP

>> Ribosomal_L24e  Ribosomal protein L24e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.01        90       3      15 ..     222     234 ..     220     236 .. 0.82
   2 ?    7.9   0.1    0.0004       3.6      11      39 ..     274     302 ..     272     307 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.01
                     X-B-TTT-SB--S CS
  Ribosomal_L24e   3 tekCsFsgykiyP 15 
                     +++CsF+g++  P
      CCD23545.1 222 LNNCSFCGEELIP 234
                     689*****98766 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0004
                     SB--SS--EEEE-TTS-EEEESSHHHHHH CS
  Ribosomal_L24e  11 ykiyPGhGkrfvrnDgkvfrFlssKcekl 39 
                     yki  G Gk   +++ k f F+++K e+ 
      CCD23545.1 274 YKISSGMGKNLFQEQDKLFDFIERKRERE 302
                     89***********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2371  (0.132244); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 3664.76
//
Query:       CCD23546.1  [L=825]
Description: hypothetical protein NDAI_0B05130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-08   33.4   8.3    7.1e-08   32.2   8.3    1.7  1  PHD       PHD-finger
    3.2e-08   34.1   1.3      3e-07   31.0   1.3    2.7  1  SET       SET domain
  ------ inclusion threshold ------
      0.015   14.9   3.4       0.03   13.9   3.4    1.5  1  PHD_2     PHD-finger
      0.056   12.1   0.1       0.08   11.6   0.1    1.2  1  EMP70     Endomembrane protein 70


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   8.3   1.6e-11   7.1e-08       2      51 ..     144     189 ..     143     190 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.6e-11
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 C +C+  +d++++++qCd+C+rw+H  C ++++   +   ++ lC+ C++
  CCD23546.1 144 C-ICGF-DDDDGFTIQCDHCNRWQHAICFGIKDV--DSAPDDHLCDVCQP 189
                 9.****.9************************88..344448******86 PP

>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   1.3   6.6e-11     3e-07      52     165 ..     237     474 ..      25     478 .. 0.66

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 6.6e-11
                 X....HHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTS................X................................... CS
                 x....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................x................................... RF
         SET  52 t....kelakasastllqklakdqkqaekedtdaalkasskaesdln................a................................... 95 
                 +    ++ +k  ++ + +k a+d++ +e e ++++ +      s+++                +                                   
  CCD23546.1 237 KdvkiNANNKGRSQSNADKVAEDIHLEEMENDNDEKHTDDGRISSRPsvidipvqspdlvvrkKehfltakeafqasflpidnyrtkdklvdlfikkhs 335
                 234556677777777777777777777777777777777777777775555555544444444044443344444444444444444444444444444 PP

                 .................................................................XXHCCCCCHCCCHEEEETEEEEEECCC....... CS
                 .................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
         SET  96 .................................................................skpeagafsaiagysidaralksgnga....... 122
                                                                                                            +       
  CCD23546.1 336 ndefieevpsfkpisfevkpyadfnysrvfpgftklgifiqencnenalieeflgeidfknrylnN-------------------------Srnqyniw 409
                 444444444444444444444444444444444444444444444333333333333333322220.........................02222222 PP

                 ......................GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEE CS
                 ......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 123 ......................gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeElt 165
                                       g+l r+l   C+pN++l +  v+++ ++++ A++dI+kGeEl 
  CCD23546.1 410 gctkrkvlfhphwpiyidarasGNLTRYLRRGCNPNVELITIKVNNEIKFVLKAIKDIEKGEELQ 474
                 23333333333333444444444444***********9999999*******************95 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.4   6.7e-06      0.03       5      35 ..     156     187 ..     153     188 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.7e-06
       PHD_2   5 lsCdkCsvaVHasCYGvskesdgee.WlCrrC 35 
                 ++Cd+C+   Ha C G+++ +++ +  lC+ C
  CCD23546.1 156 IQCDHCNRWQHAICFGIKDVDSAPDdHLCDVC 187
                 89*****************9998668*****9 PP

>> EMP70  Endomembrane protein 70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.8e-05      0.08      43      84 ..     522     564 ..     513     670 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.8e-05
       EMP70  43 gkdeeckvlCt.kkltkeelkklkelIkngYvvnwlvDnLPva 84 
                 gk+++  +l + kkl+k+ +k+lk +++n+Y++n+++D+L++ 
  CCD23546.1 522 GKNSKECHLSKiKKLSKNMVKSLKVKMNNRYKFNMVLDDLDLR 564
                 5554444555669***************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1386  (0.0773049); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5567.35
//
Query:       CCD23547.1  [L=286]
Description: hypothetical protein NDAI_0B05140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-89  296.8  22.1    1.1e-88  296.5  22.1    1.1  1  UNC-50    UNC-50 family


Domain annotation for each model (and alignments):
>> UNC-50  UNC-50 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.5  22.1   6.1e-93   1.1e-88       2     219 ..      50     282 ..      49     284 .. 0.95

  Alignments for each domain:
  == domain 1  score: 296.5 bits;  conditional E-value: 6.1e-93
      UNC-50   2 lrrlfkfkq.lDfetAlwemlhLiiaPkkvyrsiyyrkqtknqyaRdDPafliLlvlllllsaiawglayssslleilklilvmvlvdfllvglliatv 99 
                 ++rlfk+++ lDfetA+wem+hLi++P+k++rs+yy++qtknq+aRdDP+f++L++lll++++iaw++ay +s+++++kl+++m+++df+l+g++i+t+
  CCD23547.1  50 IKRLFKTPKnLDFETATWEMFHLIFKPRKAFRSFYYQHQTKNQWARDDPSFFLLQILLLSITSIAWSIAYGRSFMGFCKLLFNMIFIDFFLLGFIISTM 148
                 89****9888***************************************************************************************** PP

      UNC-50 100 lwllvnrlllksek...............seqdvewaYcFDvhlnaflpilvllyvlqllllplilkkkfvslllgntlylvaigyYfyitflGYnalp 183
                 +w+++nr +++ +                ++ ++ew+YcFDvh++afl+il+lly+lq+lllp+i+ +++++l++gn+ly++aig+Yf++tf+GY++lp
  CCD23547.1 149 FWFILNRPFFQFKLmtnndyynsnnvnnsTRPSIEWGYCFDVHCDAFLVILLLLYFLQFLLLPIINLHNWFALIVGNSLYCFAIGHYFILTFYGYSQLP 247
                 **********5555566667778888888999******************************************************************* PP

      UNC-50 184 flkktevlllpllllavlylitlllgfnvakslvsl 219
                 flk+ +++llp+l +a+ly+i +l+g++++++l  +
  CCD23547.1 248 FLKNINFILLPTLGMALLYVI-SLIGIDLSSWLSFY 282
                 *********************.*******9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2082.72
//
Query:       CCD23548.1  [L=1746]
Description: hypothetical protein NDAI_0B05150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-17   62.8   1.1    6.8e-09   35.5   0.4    3.0  3  PLDc      Phospholipase D Active site motif
    6.2e-11   42.3   1.0    7.8e-07   29.0   0.1    4.1  4  PLDc_2    PLD-like domain
    3.3e-05   23.8   1.3      0.095   12.7   0.1    4.2  4  PX        PX domain
     0.0024   18.4   1.6     0.0082   16.6   1.6    2.0  1  PH        PH domain


Domain annotation for each model (and alignments):
>> PLDc  Phospholipase D Active site motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         2   8.8e+03      14      23 ..     183     192 ..     182     192 .. 0.85
   2 !   35.5   0.4   1.5e-12   6.8e-09       1      28 []     817     844 ..     817     844 .. 0.97
   3 !   24.9   0.0   3.6e-09   1.6e-05       4      28 .]    1120    1144 ..    1117    1144 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2
                 TTEEEEE--- CS
        PLDc  14 drvafvGgaN 23 
                 +r++++G+ +
  CCD23548.1 183 KRRSIIGSID 192
                 789*****87 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 1.5e-12
                 TTBEE---EEEETTTEEEEE---SSHHH CS
        PLDc   1 ymgthHqKivivDdrvafvGgaNLcdgr 28 
                 y++ hH+K+v++D+++af Gg +Lc+gr
  CCD23548.1 817 YFWAHHEKFVVIDHTIAFMGGIDLCYGR 844
                 79************************98 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 3.6e-09
                  EE---EEEETTTEEEEE---SSHHH CS
        PLDc    4 thHqKivivDdrvafvGgaNLcdgr 28  
                   +H+K +ivDdr +++G+aN++ ++
  CCD23548.1 1120 YVHAKLLIVDDRSCIIGSANINERS 1144
                  68********************996 PP

>> PLDc_2  PLD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.84   3.8e+03      23      49 ..     144     176 ..     130     221 .. 0.69
   2 ?   -4.0   0.0       2.8   1.3e+04      26      48 ..     653     675 ..     647     699 .. 0.66
   3 !    8.8   0.0   0.00031       1.4      26      99 ..     759     838 ..     723     847 .. 0.62
   4 !   29.0   0.1   1.7e-10   7.8e-07       3     122 ..     991    1163 ..     989    1168 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.84
      PLDc_2  23 reildallkaakrgvkvrilldskkd......d 49 
                 r +++ +  +  +g ++r+++++++d      +
  CCD23548.1 144 RLVIQTIFITTVNGSDIRLMIQQRNDtsmpnnT 176
                 445667777788999999999997666666441 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.8
      PLDc_2  26 ldallkaakrgvkvrilldskkd 48 
                 ++ l+ ++++ +k++++++s+ +
  CCD23548.1 653 VKLLITLENSERKLKVICSSEYS 675
                 66678888889999999998443 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00031
      PLDc_2  26 ldal.lkaakrgvkvrilldskkddagavdeaslkelkellleagvevrvfet........llgslHaKlylidgktvivGSs 99 
                 +d++ +k a++g k+ i++ ++   +++ ++  + + + l l+ ++ +  + +        +    H+K+++id++++++G+ 
  CCD23548.1 759 IDRIlKKCAESGIKIFIVIYRNV-GNTVGTDSLWTKHSMLGLHPNIHLIRS-PnqwlqntyF-WAHHEKFVVIDHTIAFMGGI 838
                 44441558888888888888743.344444455555555555555553222.1224333332.467***************86 PP

  == domain 4  score: 29.0 bits;  conditional E-value: 1.7e-10
      PLDc_2    3 qliksAkksidiatyyf.............vsdreildallkaakrgvkvr..illdskkd.................................... 48  
                  +li+ ++++i+i +++f             +  ++i+d++++a ++g + +  i+++                                        
  CCD23548.1  991 KLIETSQHYIYIENQFFittstwdgviienKIGDAIVDRIIRANSEGAEWKafIIIPL--Mpgfdspidqpeasalrvimqcqyqsisrgetsifar 1085
                  6778888888888888855555555544444444456666666666644432255554..1468888888888888888888888777777777777 PP

      PLDc_2   49 ........dagavdeaslkelkellleagvevrvfetllgslHaKlylidgktvivGSsNltkrgldlnl..Elnvviedkela 122 
                            +  +  sl++++++ +e+++  +     +  +HaKl+++d++ +i+GS+N+++r+  +n+  E++ ++ d +l+
  CCD23548.1 1086 lrklnidpV-QYIQFYSLRKWSTIGTEEKLVTE-----QLYVHAKLLIVDDRSCIIGSANINERSQLGNRdsEVAAIVRDTDLI 1163
                  777755422.22333455555555555555422.....2578************************666633667777776665 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.4   1.1e+04      76      95 ..      54      73 ..      48      82 .. 0.76
   2 !   12.7   0.1   2.1e-05     0.095      15      65 ..     364     432 ..     348     479 .. 0.77
   3 ?    1.8   0.1     0.053   2.4e+02      43      67 ..     876     900 ..     872     944 .. 0.86
   4 !    4.8   0.0     0.006        27      33      56 ..    1576    1599 ..    1559    1667 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.4
                SHHHHHHHHHHHHHHHHHHH CS
          PX 76 deefiekrrkgLeeyLqrll 95
                +++  ++r+ +L++y++  +
  CCD23548.1 54 TKKNYKQRKPQLKSYMRPSA 73
                5677899********98655 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.1e-05
                 TTSSEEEEEEEEEETTS..SSEEEEEEEHHHHHHHHHHHHHHHT................TSTSTSSST CS
          PX  15 gskkhsyylyevelktg..akewtvkRrYsdFeeLhskLlrkfp................rvkiPplPk 65 
                  + +++++  e e++ g  +++w+v ++Y+++  Lh++L+                    ++++P++Pk
  CCD23548.1 364 KKNDNTMFKLELEYGIGstRQKWSVVKSYQEINALHTNLKLVSLqqvavnklsiesnqfrKIRLPSFPK 432
                 45566666677777666999******************9866556677777777777777666666664 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.053
                 HHHHHHHHHHHHHTTSTSTSSSTSG CS
          PX  43 dFeeLhskLlrkfprvkiPplPkkv 67 
                 dF+eL + +++ ++r +iP +P  +
  CCD23548.1 876 DFYELDKPFESMYDRNVIPRMPWHD 900
                 9*******************99665 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.006
                  SEEEEEEEHHHHHHHHHHHHHHHT CS
          PX   33 kewtvkRrYsdFeeLhskLlrkfp 56  
                  +  +++R Y++F +L +++ ++  
  CCD23548.1 1576 NDVQTWRDYKEFNKLSQEFIDEQN 1599
                  5789**************998776 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.6   1.8e-06    0.0082      16     104 ..     582     687 ..     555     688 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.8e-06
                 C....SEEEEEEEEETTEEEEESST.....TCTTESSEEEEEESTTEEEEEEEC........TTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHH CS
          PH  16 k....swkkrwfvLkdsellyyknd.....ksekdkepkgsislsncevvevva........tedpkrkfcfelriverngsrtyllqasseeerkeWi 97 
                 k    +  ++wf ++ s + y ++       +    + k +i +s+++ +++++        ++++ rkf+ +l i+ +n++r++   +sse ++++W+
  CCD23548.1 582 KemieRHTEKWFLVRHSYITYVSDLcsttpLDVFLVDSKFKIKCSGLDKRKTEEliqqdvdwNKESSRKFSVKLLITLENSERKLKVICSSEYSLRQWM 680
                 146666667899999777777777776666566666779999999999999999******9999*********988877778***************** PP

                 HHHHHHH CS
          PH  98 kaiqsai 104
                 ++i+ ++
  CCD23548.1 681 RSINYMS 687
                 ***9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.47
# Mc/sec: 11073.69
//
Query:       CCD23549.1  [L=359]
Description: hypothetical protein NDAI_0B05160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-14   52.9   2.6    3.9e-14   52.0   2.6    1.5  1  GATA           GATA zinc finger
  ------ inclusion threshold ------
       0.12   12.5   1.1       0.21   11.8   1.1    1.3  1  Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (
       0.14   12.2   3.2       0.47   10.6   3.2    1.9  1  ArfGap         Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   2.6   6.5e-18   3.9e-14       1      35 [.     117     150 ..     117     151 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 6.5e-18
        GATA   1 CsnCgttkTplWRrgpdgnksLCnaCGlyykkkgl 35 
                 C+nC t +TplWRr+  g+  LCnaCGl+ k++g+
  CCD23549.1 117 CRNCFTQNTPLWRRDDMGTV-LCNACGLFLKLHGR 150
                 ***************99999.************97 PP

>> Auto_anti-p27  Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   3.5e-05      0.21      16      40 .]     115     142 ..     114     142 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.5e-05
  Auto_anti-p27  16 etCpvC...gvPLmrdrkggkvyCvaCd 40 
                    ++C +C   ++PL r  + g+v+C aC+
     CCD23549.1 115 THCRNCftqNTPLWRRDDMGTVLCNACG 142
                    79*************66999*******6 PP

>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.2   7.8e-05      0.47      14      91 ..     115     189 ..     106     223 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7.8e-05
                 CB-TTT.-SBS--EEETTTTEEE-HHHHHHHCCS.TTT--EEETTTS---HHHHHHHHHTCHHHHHHHHTTTC-TTTSG CS
      ArfGap  14 kvCaDC.gakeptWaslnlgvflCieCsgvHrslgvhiskvrsltldkwedeelellkalgNkkaneileaklpkeekr 91 
                  +C +C +++ p W    +g++lC  C  + + +g+   +   l++d ++++  +  +++ N+++n ++ ++++k++k+
  CCD23549.1 115 THCRNCfTQNTPLWRRDDMGTVLCNACGLFLKLHGR--PRPPKLQNDIIKTR--NRSNNNNNNNNNGLFHNNSNKRRKS 189
                 58****99999****************877776642..23334444444443..3445555555666666666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2726.13
//
Query:       CCD23550.1  [L=203]
Description: hypothetical protein NDAI_0B05170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-09   36.2  21.9    4.2e-09   36.2  21.9    1.4  1  Snf7         Snf7
  ------ inclusion threshold ------
      0.072   13.4   0.7      0.072   13.4   0.7    2.5  2  BORCS7       BLOC-1-related complex sub-unit 7
      0.089   12.6   0.7       0.14   12.0   0.7    1.5  1  DUF501       Protein of unknown function (DUF501)
       0.21   11.3   0.0       0.21   11.3   0.0    2.2  3  DMSP_lyase   Dimethlysulfonioproprionate lyase
        1.6    9.1   5.9       0.63   10.4   1.7    2.1  2  CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, olig
        1.8    8.9  10.0        1.5    9.1   0.8    3.0  3  DUF948       Bacterial protein of unknown function (DUF948)
        2.3    8.8  15.8        3.2    8.3   7.4    2.3  2  APG6_N       Apg6 coiled-coil region
        2.3    7.0   3.8        2.7    6.8   3.8    1.2  1  LMBR1        LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2  21.9   1.9e-12   4.2e-09       5     171 ..      15     180 ..      12     182 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.9e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCC CS
        Snf7   5 sLrkaerkldkkqeslekkikkleaelkklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkamnkkvdi 103
                 +L+ + ++l+k+ ++  +++k++ ++lkk   + n++ a++++   +r  +++ ql +  +++++v+  ++++ ++ +v  +m q+ k m ++  ++++
  CCD23550.1  15 QLKFTSKQLQKQAQRASREEKQETNKLKKALNE-NEEIARIYASNAIRKKNERLQLLKLASRIDSVASRVQTAVTMRQVSGSMAQVCKGMDKALANMNL 112
                 5788999***************99999988765.6789************************************************************* PP

                 HHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-..GGTTHHHHHHHHHHHHHHHHHCSH.HHHHHHHTXXXS CS
        Snf7 104 dkidklmdeiedqmekaeeisEalsrsldda..deedEeeleaeLdaLeqelgdeelldesvklpevPse 171
                 ++i  +md +e+q e  +   ++ ++   +     +d + +++ + ++++e+g e   ++s+kl+++P+ 
  CCD23550.1 113 QQITMVMDKFEQQFEDLDTSVNVYEDMGVSSdaMLVDNDKVDELMGKVADENGMEL--KQSAKLDNLPQI 180
                 *************998776555544443333338899999***********88887..899999999975 PP

>> BORCS7  BLOC-1-related complex sub-unit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.7      0.11   2.5e+02      66     101 ..      10      46 ..       6      52 .. 0.72
   2 ?   13.4   0.7   3.2e-05     0.072      43      95 ..      84     138 ..      70     146 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.11
      BORCS7  66 eesLkkmsllttelnyqveaisksi.kqleevqeqvk 101
                 e++L +++ ++++l++q +  s+   +++++++++++
  CCD23550.1  10 ENTLFQLKFTSKQLQKQAQRASREEkQETNKLKKALN 46 
                 5678888888888888877766655255666666665 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.2e-05
      BORCS7  43 ksseilmkaaksfaqqedaient..eesLkkmsllttelnyqveaisksikqlee 95 
                 ++  +++++  s+aq+ + ++++  + +L++++++++++++q e++ +s++  e+
  CCD23550.1  84 QTAVTMRQVSGSMAQVCKGMDKAlaNMNLQQITMVMDKFEQQFEDLDTSVNVYED 138
                 56678999*************9988899*********************998876 PP

>> DUF501  Protein of unknown function (DUF501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.7   6.3e-05      0.14      35     110 ..      19      96 ..       5     137 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.3e-05
      DUF501  35 tcpelvkavsrL..EaeglvkaleeklaedeelaqalekahaeyaakReellteeerselekseesselkdlgvgGia 110
                 t+++l+k+ +r   E+++  ++l+++l+e+ee+a+ +++   +  ++R +ll+ ++r     s+ ++++++++v+G  
  CCD23550.1  19 TSKQLQKQAQRAsrEEKQETNKLKKALNENEEIARIYASNAIRKKNERLQLLKLASRIDSVASRVQTAVTMRQVSGSM 96 
                 56666666654333899999********************************99999988888888999999999955 PP

>> DMSP_lyase  Dimethlysulfonioproprionate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       1.4     3e+03      41      54 ..      34      47 ..      17      64 .. 0.52
   2 ?   11.3   0.0   9.1e-05      0.21       6      63 ..      76     133 ..      72     147 .. 0.85
   3 ?    0.3   0.1      0.21   4.8e+02       3      56 ..     150     202 ..     148     203 .] 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.4
  DMSP_lyase 41 eedalralvralka 54
                e+++ ++l +al++
  CCD23550.1 34 EKQETNKLKKALNE 47
                22223444444443 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.1e-05
  DMSP_lyase   6 varvfarlatalperdrqgerlPvvkhleaalalaeedalralvralkalepaLeweq 63 
                 ++ v +r++ta  +r++ g+   v+k +++ala  + +++  +++ +++  ++L  + 
  CCD23550.1  76 IDSVASRVQTAVTMRQVSGSMAQVCKGMDKALANMNLQQITMVMDKFEQQFEDLDTSV 133
                 6788999****************************99999999999999999988766 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.21
  DMSP_lyase   3 rrsvarvfarlatalperdrqgerlPvvkhleaalalaeedalralvralkale 56 
                 ++ v++++ ++a++  ++ +q ++l  + ++e+a   +ee++  +l+++l+al+
  CCD23550.1 150 NDKVDELMGKVADENGMELKQSAKLDNLPQIEKAEPVTEEKE-DKLAQRLRALR 202
                 566777888888888899999999999999999998888888.89999999876 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.7   0.00028      0.63      47     110 ..      19      82 ..      11      89 .. 0.80
   2 ?    0.7   0.1      0.27   6.1e+02      15      48 ..     100     133 ..      90     200 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00028
  CPSase_L_D3  47 lekelkkkkk...eldeellreakklGfsDkqiaelleeeeeeevrelrkklgilpvykrvDtcAae 110
                  ++k+l+k+ +   + +++  +++kk+   +++ia++ +   ++++r++ ++l++l    r+D +A+ 
   CCD23550.1  19 TSKQLQKQAQrasREEKQETNKLKKALNENEEIARIYA---SNAIRKKNERLQLLKLASRIDSVASR 82 
                  456666666555567778899***************65...456********************986 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.27
  CPSase_L_D3  15 aealrrglsveeiheltkidpwFLekleelvele 48 
                   + +++ l   +++++t++   F +++e+l +  
   CCD23550.1 100 CKGMDKALANMNLQQITMVMDKFEQQFEDLDTSV 133
                  5555556666666666666666666666654433 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.0     0.024        53      24      62 ..       9      47 ..       5      64 .. 0.80
   2 ?    9.1   0.8   0.00066       1.5      31      83 ..      85     142 ..      66     147 .. 0.70
   3 ?    2.5   0.3      0.08   1.8e+02      37      78 ..     114     161 ..     112     189 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.024
      DUF948 24 lkktldeaaatieelekqvdpilkevedllakvnelled 62
                l++tl +++ t ++l+kq++  ++e ++ ++k ++ l++
  CCD23550.1  9 LENTLFQLKFTSKQLQKQAQRASREEKQETNKLKKALNE 47
                667888888888999999999999999988888886554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00066
      DUF948  31 aaatieelekqvdpilkevedllakvne.....lledvneklekvdplteavadlges 83 
                 +a t++++   + ++ k ++++la++n      +++  +++ e++d+ ++  +d+g s
  CCD23550.1  85 TAVTMRQVSGSMAQVCKGMDKALANMNLqqitmVMDKFEQQFEDLDTSVNVYEDMGVS 142
                 3445666667777777777888888777777778999999999999988888777765 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.08
      DUF948  37 elekqvdpilkevedllakvne......lledvneklekvdplteava 78 
                 +++  +d+  ++ edl + vn+        + +    +kvd+l+ +va
  CCD23550.1 114 QITMVMDKFEQQFEDLDTSVNVyedmgvSSDAMLVDNDKVDELMGKVA 161
                 555555566666666666666633333222222225566666666665 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.4    0.0014       3.2      51     129 ..       8      86 ..       3      89 .. 0.86
   2 ?    5.4   1.2     0.011        24       9      94 ..     117     201 ..     115     203 .] 0.81

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0014
      APG6_N  51 eleeeleklekeeeelleeLkelekereeleaelaaleeelealeeeeerfwreynelqlelleleeeldsleaqyeha 129
                  le+ l +l+ + ++l+++ +++ +e+++  ++l+++ +e e++ +  +    + ++ +l+ll+l  + ds++++++ a
  CCD23550.1   8 GLENTLFQLKFTSKQLQKQAQRASREEKQETNKLKKALNENEEIARIYASNAIRKKNERLQLLKLASRIDSVASRVQTA 86 
                 5778888999999999999999999999999999999999999999999999999999999999999999999998876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.011
      APG6_N   9 lLleeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleeelek...lekeeeelleeLkelekereeleaelaaleeeleal 94 
                 ++++++++q+e+++   + Ye+     ++  ++++    +++el  ++++   +e +++++l +L ++ek++   e++  +l++ l+al
  CCD23550.1 117 MVMDKFEQQFEDLDTSVNVYEDMGVSSDAMLVDND----KVDELMGKVADengMELKQSAKLDNLPQIEKAEPVTEEKEDKLAQRLRAL 201
                 57889999999999999999999988888877755....66666666666666999999999999999999999999999999998887 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.8    0.0012       2.7     199     317 ..      10     125 ..       2     152 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0012
       LMBR1 199 deelkklyfeaaklntekeeaereledllkevkklrksisesdp.lrkyleeilkkvPeeiaeklksnenkteeslaklekqlika..lqkrertekqw 294
                 +++l +l+f  ++l+++ + a re +   +e +kl+k ++e+++  r y ++ ++k +e ++        k ++++ +  +++++a  +++   + +q 
  CCD23550.1  10 ENTLFQLKFTSKQLQKQAQRASREEK---QETNKLKKALNENEEiARIYASNAIRKKNERLQLL------KLASRIDSVASRVQTAvtMRQVSGSMAQV 99 
                 44555555555566544444444444...55555555666666555555555555555544444......33333333333333331134444444555 PP

       LMBR1 295 krlleka...lelediiknksskeke 317
                  + ++ka   ++l++i   +++ e++
  CCD23550.1 100 CKGMDKAlanMNLQQITMVMDKFEQQ 125
                 55555553333445555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3137  (0.174968); expected 358.6 (0.02)
Passed bias filter:                      751  (0.0418874); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 1517.26
//
Query:       CCD23551.1  [L=552]
Description: hypothetical protein NDAI_0B05180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.8e-157  523.0   3.4   7.7e-157  522.8   3.4    1.0  1  Cpn60_TCP1   TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.046   13.0   0.0       0.12   11.6   0.0    1.7  1  Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  522.8   3.4  8.6e-161  7.7e-157       1     489 [.      36     526 ..      36     528 .. 0.99

  Alignments for each domain:
  == domain 1  score: 522.8 bits;  conditional E-value: 8.6e-161
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 +++++k tlGP G d ++v +++k++++nDGatil+ l++ hPaa++lv+++++qd evGDGTt+v+iLageL++ea+ ++++g+    i++gy++a+ 
  CCD23551.1  36 IQETLKPTLGPLGSDILIVTSNQKTTISNDGATILRLLDVVHPAARTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHIIMKGYRTAVR 134
                 6899*********************************************************************************************** PP

                 HHHHHHHHHXEEBXSC.STT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECECTTSEEESEEEESS--SST...T CS
  Cpn60_TCP1 100 kaleaLkeiaveisse.ekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsledselveGlvldkgvlsp...d 194
                  a+e++ke a ++s+e e +re L ++art++sskl+ k+a+++ k++vdAv+++++++  ld + i+++ki gg +e+s +++G++++k+++++   +
  CCD23551.1 135 LAVEKIKELATDVSVEhEGSRELLERCARTAMSSKLIYKNADFFVKMCVDAVLSLDKDD--LDDKLIGIKKIPGGAMEESMFIDGVAFKKTFSYAgfeQ 231
                 ****************667999999***************************8888775..9999******************************9999 PP

                 SSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHH CS
  Cpn60_TCP1 195 mpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlakat 293
                  pk ++n+k+l l+v+Le + ++ +++v+++++++++++++ae+++++++le+i+++g+n+v+++  i dla++++a+++i+++ rv+ +d++r+ +a+
  CCD23551.1 232 QPKNFKNPKILSLNVELELKAEKDNAEVRVEQVSDYQAIVDAEWQIILDKLEQIKDTGANIVLSKLPIGDLATQYFADRNIFCAGRVSSDDMNRVIQAV 330
                 9************************************************************************************************** PP

                 T--EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCC CS
  Cpn60_TCP1 294 GatavssledltpeelGtakkveeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyak 392
                 G+++ s+ +d++p+ lGt++++ee +ig e++ ++++++++k++t+llrg  ++v++e+er+++dA+ +vk+a++++ vv+GGGa+e+e++k+l++y+k
  CCD23551.1 331 GGSIQSTTSDIKPDYLGTCETFEEIQIGAERYNLFKGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLVVAGGGAIEMEISKYLRDYSK 429
                 *************************************************************************************************** PP

                 TSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXX CS
  Cpn60_TCP1 393 svsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiika 489
                 ++ g++ql+i+afakALevip++L+eNaG+d+ e+l+klr ah+kgek++g+d+e+++i d +++ v++p+ vk +al+sAtea ++iL++de+i +
  CCD23551.1 430 TIAGKQQLIINAFAKALEVIPRQLCENAGFDAVELLNKLRLAHSKGEKWFGVDFETENIGDNFSKFVWEPALVKINALQSATEATNLILSVDETITN 526
                 **********************************************************************************************976 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.3e-05      0.12     124     179 ..     387     447 ..     355     460 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.3e-05
                  EECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-.....EEEEEESSSSSST CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxx RF
  Pyr_redox_2 124 gklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgk.....evtlveardrllr 179
                   ++ r+l++a  + +  l++++vv GgG+i +E++ +l+++ k     +  ++ a  + l+
   CCD23551.1 387 AEVERSLHDAIMIVKRALQNKLVVAGGGAIEMEISKYLRDYSKtiagkQQLIINAFAKALE 447
                  3455889999999999999******************977766333325556666555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4280.67
//
Query:       CCD23552.1  [L=668]
Description: hypothetical protein NDAI_0B05190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-31  106.4  11.4    1.4e-07   32.1   0.0    6.4  7  WD40         WD domain, G-beta repeat
    1.3e-08   35.0   0.1       0.24   11.7   0.1    4.9  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   1.0   7.4e-08   0.00066       2      38 .]     341     380 ..     340     380 .. 0.75
   2 !   32.1   0.0   1.6e-11   1.4e-07       3      38 .]     386     422 ..     384     422 .. 0.93
   3 !   23.7   0.0   6.6e-09   5.9e-05       3      38 .]     445     479 ..     443     479 .. 0.92
   4 !    9.0   0.0    0.0003       2.7      24      38 .]     517     535 ..     483     535 .. 0.75
   5 !   23.1   0.1   1.1e-08   9.5e-05       1      38 []     539     575 ..     539     575 .. 0.78
   6 ?   -2.0   0.0      0.92   8.3e+03      12      26 ..     588     604 ..     584     616 .. 0.70
   7 ?   -3.1   0.0         2   1.8e+04      29      37 ..     659     666 ..     657     666 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7.4e-08
                 EEEEEEE.SS.SSEEEEEEETTSSE..EEEE.ETTSEEEEEE CS
        WD40   2 qclrtlt.GH.ssvtslafspdgaw..lasG.sdDgtvriWd 38 
                 +++++++ +H +s+t+l+f   ++w  l+++  +D+tv+iWd
  CCD23552.1 341 DKIHSFKsAHtDSITCLDF--AKSWntLCTAaNYDNTVKIWD 380
                 6789996699888****43..4444668877347*******9 PP

  == domain 2  score: 32.1 bits;  conditional E-value: 1.6e-11
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +l++++GH   +++l+ s ++++l++Gs+D tv++W+
  CCD23552.1 386 QLGSFSGHkATINCLQMSNNNSLLMTGSKDATVKVWN 422
                 6899****666*************************8 PP

  == domain 3  score: 23.7 bits;  conditional E-value: 6.6e-09
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 c+ t++ Hs+ +t+l  s dg +l+s+s+D+tvr +d
  CCD23552.1 445 CVLTFDSHSDeITAL--SFDGEYLISASRDKTVRQYD 479
                 899*****556****..99***************998 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0003
                 E....EEEEETTSEEEEEE CS
        WD40  24 w....lasGsdDgtvriWd 38 
                 +    l++Gs Dg  r+Wd
  CCD23552.1 517 YyntaLITGSSDGIARLWD 535
                 13444779*88*******9 PP

  == domain 5  score: 23.1 bits;  conditional E-value: 1.1e-08
                 TEEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 g+ +r+ +GH++ +tsl+f+p +  l+++s Dg +r+Wd
  CCD23552.1 539 GKVVRSMEGHNGaITSLQFDPIK--LTTSSTDGDIRVWD 575
                 578999****555****555554..557878*******9 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 0.92
                 S..EEEEEEETTSSEEE CS
        WD40  12 s..vtslafspdgawla 26 
                 +  vts++ sp g + +
  CCD23552.1 588 GlpVTSFDSSPPGLLAV 604
                 45599**9999887755 PP

  == domain 7  score: -3.1 bits;  conditional E-value: 2
                 ETTSEEEEE CS
        WD40  29 sdDgtvriW 37 
                 s +gtv +W
  CCD23552.1 659 S-NGTVNLW 666
                 5.8****** PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   2.7e-05      0.24      27      90 ..     341     403 ..     329     405 .. 0.84
   2 !    7.0   0.1   0.00081       7.2      28      70 ..     377     426 ..     374     451 .. 0.79
   3 !    8.5   0.0   0.00028       2.5      35      79 ..     450     492 ..     422     500 .. 0.86
   4 !    7.3   0.0   0.00062       5.5      51      89 ..     520     557 ..     507     559 .. 0.90
   5 ?   -0.5   0.0      0.17   1.6e+03      37      70 ..     587     620 ..     562     629 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.7e-05
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavay.sdgevrlldaesgkvvhslsvksekavtclgWg 90 
                   ++ ++ ++++  ++++L + ++ + L+ a   d++v++ d ++++ + s+s ++  +++cl+ +
   CCD23552.1 341 DKIHSF-KSAHTDSITCLDFAKSWNTLCTAAnYDNTVKIWDLSTTEQLGSFSGHKA-TINCLQMS 403
                  577777.7889999********999999765169*****************99999.6***9865 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00081
  ANAPC4_WD40  28 rvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  ++w+l       + ++++ ++++L+ +++++lL+ + +d +v++ ++  g
   CCD23552.1 377 KIWDLstteqlgSFSGHKATINCLQMSNNNSLLMTGSKDATVKVWNIDLG 426
                  56666666665556788999***********************9988766 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00028
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  d+++ e+++L++  dg+ L  a  d +vr +d+ sgk+ ++l ++
   CCD23552.1 450 DSHSDEITALSF--DGEYLISASRDKTVRQYDIISGKCFQTLATN 492
                  677788999876..9***********************9998776 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.00062
  ANAPC4_WD40  51 klLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  + L  + sdg  rl d   gkvv+s++ ++  a+t+l++
   CCD23552.1 520 TALITGSSDGIARLWDLRIGKVVRSMEGHNG-AITSLQF 557
                  67999***********************999.6999987 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.17
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                   +  v+s+  +p g l +++  + ++r++d +++
   CCD23552.1 587 CGLPVTSFDSSPPGLLAVISEGEERIRIIDQQKK 620
                  4667788888888888888888889999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1270  (0.070835); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4745.22
//
Query:       CCD23553.1  [L=303]
Description: hypothetical protein NDAI_0B05200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-87  292.7  10.6    3.3e-87  292.5  10.6    1.1  1  DASH_Spc34      DASH complex subunit Spc34
  ------ inclusion threshold ------
      0.054   13.1   1.4       0.11   12.1   1.4    1.5  1  RNA_Me_trans    Predicted SAM-dependent RNA methyltransferase


Domain annotation for each model (and alignments):
>> DASH_Spc34  DASH complex subunit Spc34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.5  10.6   3.7e-91   3.3e-87       1     254 [.       5     293 ..       5     294 .. 0.99

  Alignments for each domain:
  == domain 1  score: 292.5 bits;  conditional E-value: 3.7e-91
  DASH_Spc34   1 LdscLeeikqSveSisslkFkpPgIFtNAlvk..........kddItkLirDtepeee.aLfkidkvekkpeRkDGkkgvlDylteretnlkrnrrlgl 88 
                 Ldsc++ei+q++eSis+l+FkpPgIF+NA+v+          k+++tkLirD++p+ee +Lfk+dkv+k+++RkDG++g++Dyl+er++n+krnrr+g+
  CCD23553.1   5 LDSCIREINQATESISTLYFKPPGIFHNAVVHnivnkgsneyKSNLTKLIRDCNPKEEvSLFKVDKVKKTIKRKDGQEGIFDYLSERNANIKRNRRIGI 103
                 89************************************************************************************************* PP

  DASH_Spc34  89 pekkpivhvPke..................................edsgvlevlakkfksdkqirqlllalqngsvttgedsgssseka.nrrktafv 152
                 p +kpi+hvPke                                   dsg le+l +kfk++kqi +ll+alqngsv++++ds ++++   ++rkt+fv
  CCD23553.1 104 PGEKPIIHVPKEfylkqhnreltdkkrrttnnllfnmdnksskvgsVDSGSLEILLNKFKNNKQILNLLYALQNGSVMVENDSIMPNQFVaDKRKTMFV 202
                 ************************************************************************************999988899****** PP

  DASH_Spc34 153 edfdvelllkvleelltkyplleakekieelreeYeelseeieeleaeiaeQkkqLeaqnknesessseddsesetskskdvdelirkEeeeIeeLerk 251
                 edf++el+l+vl+e+ +++pl+e++e+++el+e+Y +l+++i+  ++e ++Q++qL+ q+k++s  s           s+ v++li+kE+++I +Le+k
  CCD23553.1 203 EDFSPELILEVLDEIAKQWPLAEYRESYNELQERYLDLKAKIDVARKEADLQEEQLDIQSKSSSMAS-----------SNAVTKLIEKERNNIMTLEEK 290
                 *************************************************************998887...........79******************* PP

  DASH_Spc34 252 lke 254
                 +++
  CCD23553.1 291 IRK 293
                 *98 PP

>> RNA_Me_trans  Predicted SAM-dependent RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.4   1.2e-05      0.11       2      73 ..     209     281 ..     208     300 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.2e-05
  RNA_Me_trans   2 yviEhleeelseWvllEYrhiakevgaenlil.tslskasles.lpe.elksl..aklelekesveellkelkevkk 73 
                   +++E l+e  ++W l EYr+ ++e++++ l l +++  a++e+ l+e +l+ +  ++  + ++ v++l++++    +
    CCD23553.1 209 LILEVLDEIAKQWPLAEYRESYNELQERYLDLkAKIDVARKEAdLQEeQLDIQskSSSMASSNAVTKLIEKE----R 281
                   699**********************99976652344433333344440444332233334444777777764....3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1483  (0.0827152); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2262.84
//
Query:       CCD23554.1  [L=386]
Description: hypothetical protein NDAI_0B05210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-84  283.5   0.0    2.5e-84  283.2   0.0    1.0  1  Peptidase_M22   Glycoprotease family
     0.0074   16.0   0.0      0.038   13.6   0.0    1.9  2  Carbam_trans_N  Carbamoyltransferase N-terminus


Domain annotation for each model (and alignments):
>> Peptidase_M22  Glycoprotease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.2   0.0   2.8e-88   2.5e-84       1     270 [.      53     350 ..      53     351 .. 0.93

  Alignments for each domain:
  == domain 1  score: 283.2 bits;  conditional E-value: 2.8e-88
                    XCEXEEEEEEEEE....S.SSSHHHHHHHHHHHHHHHHHHHHHHHTST..GGGEEEEEEEEESS-HHHHHHHHHHHHHHHHHCT--EEEEEHHHHH CS
  Peptidase_M22   1 evlanvvasqkelhakyG.GvvPelasraHserllplieealaeagls..ledldaIavtkgPGlftgLrvGvsfAkglalalnkPlvgVnhleah 93 
                    e+l+n+  +++   +++G G++P++++r+H++++++li++al+eag++   +d+d+I++tkgPG++ +L+ +v +A++++l +++ lvgVnh+ +h
     CCD23554.1  53 EILSNIRDTYI---TPPGeGFLPRDTARHHRNWCVRLIKRALEEAGINdpRNDIDVICFTKGPGMGAPLHSVVIAARTCSLMWGVDLVGVNHCVGH 145
                    57888888886...99999****************************83346******************************************** PP

                    HHCCHCT.SECSSCEEEEESSSTEEEEEECTTEEEEEEEESSSEHHHHHHHHHHHHT..SSCCH..HHHHHHCTC...S........EETTEEE.C CS
  Peptidase_M22  94 alaarle.ekeefPvvllvsGghtqvylvkegryeilgetlddaagealdkvarllglpypggp..kieklakeg...kk.iefprplkgldfsfs 182
                    ++++r e ++  +Pvvl+vsGg+tqv++++e+ry+i+getld+a+g++ld++ar+l++p+ ++p  +ie+la++    ++ +e+p+++kg+d+s+s
     CCD23554.1 146 IEMGR-EiTQAINPVVLYVSGGNTQVIAYSENRYRIFGETLDIAIGNCLDRFARTLKIPNAPSPgyNIEQLANKCknkDQlVELPYTVKGMDLSMS 240
                    *****.5577789****************99*****************************777777*******88754338*************** PP

                    HHHHHHHHHHST..T...................HHHHHHHHHHHHHHHHHHHHHHHHHHCTBSEEEEESGGGGXHHHHHCHCCHHHH.TTSEEEX CS
  Peptidase_M22 183 Glktavlkelek..e...................vedlaasfqeavvdhlvekteralklpkakelvilGGvaankrLrealeeeaee.lglklii 256
                    G+ +++ +++++  +                   vedl++s+qe+ +++lve+tera+++ +a++++i+GGv++n rL+e++ +++++ ++ ++++
     CCD23554.1 241 GILAYIDSLAKDlfKgnkknkilfdqktgeqkvtVEDLCYSLQENLFAMLVEITERAMAHVNASQVLIVGGVGCNVRLQEMMGQMCKDrANGQVHA 336
                    *****9999955553678899*************************************************************************** PP

                    XXHHHHSSXCHHHH CS
  Peptidase_M22 257 Pplkyctdnaamia 270
                    +++++c dn++mia
     CCD23554.1 337 TDERFCIDNGVMIA 350
                    *************8 PP

>> Carbam_trans_N  Carbamoyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.066   5.9e+02      46      70 ..      85     111 ..      73     116 .. 0.77
   2 !   13.6   0.0   4.3e-06     0.038     243     309 ..     256     319 ..     157     326 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.066
  Carbam_trans_N  46 kaidyaleeagve..lsdiDqivfdei 70 
                     + i+ aleeag++   +diD+i f + 
      CCD23554.1  85 RLIKRALEEAGINdpRNDIDVICFTKG 111
                     57999*******944489****99875 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.3e-06
  Carbam_trans_N 243 skkkvhdffeasalrlkearekdedlaAsiqvflErlvvevlnivyeklkirnLclaGGvalNiklN 309
                      +kk + +f++++    e++   edl  s+q+ l  ++ve ++ +++++++ +  + GGv+ N+ l 
      CCD23554.1 256 GNKKNKILFDQKT---GEQKVTVEDLCYSLQENLFAMLVEITERAMAHVNASQVLIVGGVGCNVRLQ 319
                     3444444444433...22222235***************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2784.18
//
Query:       CCD23555.1  [L=611]
Description: hypothetical protein NDAI_0B05220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.9e-147  489.9  39.5   7.9e-147  489.7  39.5    1.0  1  AA_permease    Amino acid permease
    4.2e-39  134.6  41.3    5.5e-39  134.2  41.3    1.0  1  AA_permease_2  Amino acid permease
     0.0014   19.1   0.1     0.0033   17.9   0.1    1.6  1  Pet100         Pet100
  ------ inclusion threshold ------
      0.097   12.3   3.3       0.52   10.0   0.4    2.6  2  Keratin_assoc  Keratinocyte-associated protein 2


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.7  39.5  1.8e-150  7.9e-147       1     477 [.     103     567 ..     103     569 .. 0.97

  Alignments for each domain:
  == domain 1  score: 489.7 bits;  conditional E-value: 1.8e-150
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+++ a+gg+iG glfvg++ +l++aGp+g+++++ l+ ++i++++++lge+a+ +p+sggf+tya+rf+++++Gf+ ++ny ++w+++l+le++ as
   CCD23555.1 103 HMQMVAIGGAIGSGLFVGSSTALRTAGPAGIVIGWGLTSTMIYCMVMALGELAVVFPVSGGFTTYATRFIDESFGFASNFNYALQWLATLPLEIVSAS 200
                  99************************************************************************************************ PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                  i++++w  +++    ++++a+f++v++iinl+gv+++geaef+++ ik++++i+fii+gi+l+agg+p+ g  g+r+++++g+++ +n + +      
   CCD23555.1 201 ITVNYW-QTPERY-RDGFVALFWLVIVIINLFGVRGFGEAEFVFSTIKVLTVIGFIILGIVLVAGGGPEGGFvGGRYWHNPGAFVGDNAGTQ------ 290
                  ******.555555.8********************************************************9***********555555555...... PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa..aspfvifikesgvsvlapl 291
                    fk+++svfv+++f+f+G elv+i+a+E+++P+ks+P+a +qvv+ri++fY +sl++igllvp++d+ l+ +s +   aspfvi+i+ +g+++l+++
   CCD23555.1 291 --FKGVCSVFVTAAFSFAGSELVGITAAEAANPRKSVPRAAKQVVWRIVLFYMGSLIMIGLLVPYTDPRLIGASSVDasASPFVIAIVTHGIRGLPSV 386
                  ..********************************************************************9966655799****************** PP

  AA_permease 292 inaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylr 389
                  in+vil+a+ls++ns+++++sR++ +l+++g +P ++++++++g+Pl++i++ + ++l+a+++as + +  +vf++l+a+s+l+ l++w+ i+l+++r
   CCD23555.1 387 INVVILIAVLSVGNSAIFAGSRTIAALSEQGFLPEIFGYIDRKGRPLVGIIVISTFGLIAFIAASKKQG--EVFAWLMALSGLSSLFTWGGICLCHIR 482
                  *********************************************************************..*************************** PP

  AA_permease 390 fRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrpql 477
                  fR alk+qgrs++el+f ++ ++ g+ ++l++l++++++++++a+++   ++++ +a++f+++yl+++++l++++g+k+++kn++ ++
   CCD23555.1 483 FRMALKAQGRSTNELPFVSPAGIIGSSWGLFMLLLMFIAQFYVALFP---PGSKPSAEVFFESYLSFPIVLAFYFGHKIYKKNWKLFI 567
                  ***********************************************...666669****************************9876 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2  41.3   1.2e-42   5.5e-39       8     405 ..     106     521 ..     102     552 .. 0.84

  Alignments for each domain:
  == domain 1  score: 134.2 bits;  conditional E-value: 1.2e-42
  AA_permease_2   8 alvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasilsvaas 101
                    +++ig +igsg fv +  ++ ++gpa i+++w+ +  ++++++ ++ El+ ++p sgG  +y+ +++ + ++f s + ++++++++l++ +++a  
     CCD23555.1 106 MVAIGGAIGSGLFVGSstALRTAGPAGIVIGWGLTSTMIYCMVMALGELAVVFPVSGGFTTYATRFIDESFGFASNFNYALQWLATLPLEIVSASI 201
                    689************98877789999888888777777789**********************************************999888888 PP

  AA_permease_2 102 yllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl...stetdt...ffpn..gwpg 189
                    +  ++  p+    +    ++++++ +++++in++g+++ + + ++  ++k+ l++i +iilg+++v ggg          +++   f+++  g ++
     CCD23555.1 202 TVNYWQTPE----R-YRDGFVALFWLVIVIINLFGVRGFGEAEFVFSTIKV-LTVIGFIILGIVLVAGGGPEGGfvgGRYWHNpgaFVGDnaGTQF 291
                    777754443....3.345888999999************************.69999999******998887778886666665544444555554 PP

  AA_permease_2 190 ..vllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei.....anlsnlgsvaalffeavggkvvaiiv 276
                      v +++ ++++sf+G e +   + e+ +  k vp+a+  ++  ++++y++  i +   vp         ++++ + s++ +   + g + + +++
     CCD23555.1 292 kgVCSVFVTAAFSFAGSELVGITAAEAANprKSVPRAAKQVVWRIVLFYMGSLIMIGLLVPYTDPrligaSSVDASASPFVIAIVTHGIRGLPSVI 387
                    54899*********************6666478*****9999999999999888888888875554677766677777777777777778****** PP

  AA_permease_2 277 vilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas...saaynfllsvsslgliisyllliiga 369
                    +++i +++l  +n+a+++ sr++ al+++g+lP+ f  ++++g+p+++ii++ ++ li +++    s   ++ + +l+++s l++++ ++ + ++ 
     CCD23555.1 388 NVVILIAVLSVGNSAIFAGSRTIAALSEQGFLPEIFGYIDRKGRPLVGIIVISTFGLIAFIAA---SkkqGEVFAWLMALSGLSSLFTWGGICLCH 480
                    ********************************************************7766444...4467************************** PP

  AA_permease_2 370 lilrkkrphlkr.....pgkilvaiigalfllfllvalffp 405
                    +  r+  + ++r     p   + +iig  + lf+l ++f+ 
     CCD23555.1 481 IRFRMALKAQGRstnelPFVSPAGIIGSSWGLFMLLLMFIA 521
                    ********99999999988899****977777777555532 PP

>> Pet100  Pet100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   7.3e-07    0.0033       7      65 ..     537     594 ..     532     599 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 7.3e-07
      Pet100   7 EvfkfglYvffPvgvfyyfnqpeyfee.fvvktkreffppeekelreeleelkeerlakr 65 
                 Evf f  Y++fP+++ +yf++  ++++ + + +k e    ++   +++le lk+e+++++
  CCD23555.1 537 EVF-FESYLSFPIVLAFYFGHK-IYKKnWKLFIKAEDMDIDTGRRETDLELLKQEIEEEK 594
                 565.899**************9.55555*******9999999999999999999998865 PP

>> Keratin_assoc  Keratinocyte-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4   0.00012      0.52      27      91 ..      98     161 ..      86     167 .. 0.79
   2 ?    1.8   0.1     0.038   1.7e+02      38      75 ..     503     544 ..     485     558 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
  Keratin_assoc  27 klassel.ltilgGflgsllFvllLTavgnletllfgkgfqakllpEvllclvlaliasglvHrvc 91 
                    +l+  ++ ++ +gG++gs lFv + Ta+  +    +  g+   l++ ++ c+v+al   ++v  v+
     CCD23555.1  98 TLKGRHMqMVAIGGAIGSGLFVGSSTALRTAGPAGIVIGWG--LTSTMIYCMVMALGELAVVFPVS 161
                    555555415678******************98887777775..66778999999998888887776 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.038
  Keratin_assoc  38 gGflgsl..lFvllLTavgnletllf..gkgfqakllpEvll 75 
                    +G++gs   lF+llL ++  +   lf  g++  a+++ E  l
     CCD23555.1 503 AGIIGSSwgLFMLLLMFIAQFYVALFppGSKPSAEVFFESYL 544
                    7899986569*********99888883344445666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4293.08
//
Query:       CCD23556.1  [L=299]
Description: hypothetical protein NDAI_0B05230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2295.46
//
Query:       CCD23557.1  [L=367]
Description: hypothetical protein NDAI_0B05240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.3e-100  333.1  15.8   9.3e-100  333.1  15.8    1.6  2  SUN       Beta-glucosidase (SUN family)
  ------ inclusion threshold ------
      0.041   13.8   0.0      0.087   12.7   0.0    1.5  1  UEV       UEV domain
        1.5    7.9   8.7        2.4    7.3   8.7    1.3  1  Med3      Mediator complex subunit 3 fungal
        1.6    7.3   2.8        2.2    6.9   2.8    1.2  1  MSP1_C    Merozoite surface protein 1 (MSP1) C-terminus


Domain annotation for each model (and alignments):
>> SUN  Beta-glucosidase (SUN family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.5      0.42   1.9e+03     104     141 ..      57      95 ..      38     108 .. 0.49
   2 !  333.1  15.8  2.1e-103  9.3e-100       1     245 []     113     355 ..     113     355 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.42
         SUN 104 lsksvavCrTdyPGtEa.mlipteveagssaelavpded 141
                 +s+ va  +   P t a   +pt++++  +++ +  ++ 
  CCD23557.1  57 TSTLVAAVQNAQPTTQAaAAVPTTTTTPAKETTTLAQAA 95 
                 344455555555554431345555544333333333333 PP

  == domain 2  score: 333.1 bits;  conditional E-value: 2.1e-103
         SUN   1 dgkikCsefpsdeglvavdalglgGwagiqdvkge.sqeCkegsyCsyaCppGylktqwpsaqgatgssvGGLyCnkdGklektnkdskklCekgagkv 98 
                 dg+ikCs+fpsd+g+v++++ gl+Gw++i++++g+ s++C++g+yCsyaC pG++ktqwp++q+a+g+svGGLyC kdG+l+++n+d+++lC++g++++
  CCD23557.1 113 DGTIKCSDFPSDQGAVSINWIGLNGWTSIMNMDGQtSTTCEDGMYCSYACAPGMSKTQWPADQPADGKSVGGLYC-KDGYLYRSNTDYSSLCVAGVDTA 210
                 689*******************************9889*************************************.7********************** PP

         SUN  99 kvknklsksvavCrTdyPGtEamlipteveagssaelavpdedtyykwkgkktsaqYYvNkaGvsvedaCvWgseskpvGNwaplvlGagkdedgktyl 197
                  ++n++s+s+a+CrTdyPG+E+m+ipt+v+agss++++v+dedtyy+w+gkkts+qYYvN+aGvs+ed+CvWg+++++vGNwap+vlGag +  g +yl
  CCD23557.1 211 IAVNQISQSIAMCRTDYPGSENMVIPTVVDAGSSQPISVVDEDTYYTWQGKKTSTQYYVNNAGVSMEDGCVWGTDGSAVGNWAPVVLGAGSTG-GISYL 308
                 ********************************************************************************************9.***** PP

         SUN 198 sifqNptskeklnfnvkieaeegdsvsgkCkyesgklskgggadgCtv 245
                 si++Np++k+ +n+nvki+a+eg++v g+C+ye+g +s g+g+dgCtv
  CCD23557.1 309 SIIPNPNNKTPPNYNVKIVASEGSTVVGSCSYENGVYS-GSGSDGCTV 355
                 ***********************************999.679*****8 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     2e-05     0.087      71     116 ..      26      72 ..      11      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
                 GCC--.TSGGGGGB-TTSBB--HHHHS--TTT--HHHHHHHHHH--- CS
         UEV  71 ptksm.vikknenvdaqGlvylpyLeeWkreksnlvslvqelaqafe 116
                  +++  +i + e+vd++G v  p+ +++ +++s+lv +vq+ + + +
  CCD23557.1  26 HHEKRaMITVTEYVDENGAVVIPVGDKYVKQTSTLVAAVQNAQPTTQ 72 
                 44443599********************************7665544 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   8.7   0.00054       2.4     132     180 ..      61     108 ..      29     128 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00054
        Med3 132 askasvvnstpssaastPtttatPgantktaakslpapnatatigtptn 180
                  ++ + ++ t  +aa+ Pttt+tP  +t+t a+++ + +a ++ +t ++
  CCD23557.1  61 VAAVQNAQPTTQAAAAVPTTTTTPAKETTTLAQAAETQAA-SSSSTSST 108
                 33334444455678999*************9999988443.33333333 PP

>> MSP1_C  Merozoite surface protein 1 (MSP1) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.8    0.0005       2.2     239     324 ..      56     120 ..       8     149 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0005
      MSP1_C 239 knsdnvkevkeal..eaykellPkvstseaavttavtadaavpdatPeglsvrgagvsGavkeetpepvagsvasgltelqvvvklqd 324
                 + s  v++v++a    +    +P  +t++a+ tt++++ a ++ a  ++ s+++    G++k                         d
  CCD23557.1  56 QTSTLVAAVQNAQptTQAAAAVPTTTTTPAKETTTLAQAAETQAASSSSTSSTSGFQDGTIK-----------------------CSD 120
                 33333444444431122333455555555555555555555555544444333333344443.......................333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 2791.55
//
Query:       CCD23558.1  [L=271]
Description: hypothetical protein NDAI_0B05250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-33  116.0   0.0    2.2e-33  115.6   0.0    1.1  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
      0.042   13.2   0.0      0.059   12.7   0.0    1.2  1  His_Phos_2  Histidine phosphatase superfamily (branch 2)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.0   2.4e-37   2.2e-33       2     165 ..       9     194 ..       8     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 2.4e-37
                 EEEE---BTTB--....TT----B-HHHHHHHHHHHHH.......HTTS---EEEE-SSHHHHHHHHHHHHCTT......--EEE-GGGS----GGGTT CS
  His_Phos_1   2 yLvRHGetewnaegrlqgrtdvpLteeGreqAealaer.......lagepidaiysSplkRarqTaeliaealg......lpveldegLrEidfGdweg 87 
                 ++vRHG+tew+++g + g td+pLt+ G++q+ +++e        +   +i+ i++Sp  RarqT  l+++ l       ++v +de++rE+++Gd+eg
  CCD23558.1   9 IIVRHGQTEWSKSGQYTGSTDIPLTPFGERQMVRTGESifsnnrfIDPNHITYIFTSPRTRARQTIDLVLRPLTdeqrskIKVVVDEDIREWEYGDYEG 107
                 79***********************************95444443333677777****************9998999999******************* PP

                 -B.HHHHHH..HSHHHHHHHHH-GGG-B...S-BHHHHHHHHHHHHHHHHHHTTTSE.......EEEEE-HHHHHHHHHHHHT--GGG CS
  His_Phos_1  88 lttaeiaeeypeeleawlrdpadvrppg...gEsledvaaRvaaaleelaarheget.......vlvVsHggvirallarllglplee 165
                 l t ei e ++ +  +++r+ ++ +  g   gE+ +++  R+++a+ ++ + h+++        ++v++Hg+++r+++a +++l +e+
  CCD23558.1 108 LLTPEIVELRKSRGLDQERS-WNIWRDGcenGETTQEFGLRLSRAIARIQNLHRKHMeegipsdIMVFAHGHALRYFAALWFKLGVEK 194
                 *****999865544433333.3344445567****************99998888877789999*****************9998875 PP

>> His_Phos_2  Histidine phosphatase superfamily (branch 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.6e-06     0.059      52     130 ..      17      82 ..      10     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6.6e-06
                 GGGGT.........--SSSTTS.B-HHHHHHHHHHHHHHHHHCHTCCHTTSS--TTEEEEEESSHHHHHHHHHHHHHHC CS
  His_Phos_2  52 hfpgtyrkveveklqlilkwggelthaGrkqaeelGrqfrqrYplgLlrlhltykdlkirassegRviaSAaafakGll 130
                 ++++        + q++  ++  lt++G+ q+++ G+ +  + +  +++++   +  +i++s   R +++   +++ l 
  CCD23558.1  17 EWSK--------SGQYTGSTDIPLTPFGERQMVRTGESIFSNNR--FIDPN---HITYIFTSPRTRARQTIDLVLRPLT 82 
                 5554........44999999999****************99887..88886...9*************99777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2019.29
//
Query:       CCD23559.1  [L=438]
Description: hypothetical protein NDAI_0B05260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3249.85
//
Query:       CCD23560.1  [L=356]
Description: hypothetical protein NDAI_0B05270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 2470.65
//
Query:       CCD23561.1  [L=299]
Description: hypothetical protein NDAI_0B05280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-93  310.5   5.4    1.1e-92  310.1   5.4    1.1  1  PET10     Petite colonies protein 10


Domain annotation for each model (and alignments):
>> PET10  Petite colonies protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.1   5.4   6.1e-97   1.1e-92       1     249 [.      23     264 ..      23     265 .. 0.98

  Alignments for each domain:
  == domain 1  score: 310.1 bits;  conditional E-value: 6.1e-97
       PET10   1 nsptlshLqrYpvvskllkkvlslplvskvlsvvlsvaaklkealvdskkaPalvkkvynavlklllklDelvnlLvlreGidalleqykehsnkpGvW 99 
                 +s+++++L+rYp++sk+l+k++s+pl+sk+ sv+ s+++k+++      +aP ++kk++n+vl++l+++D+l+nlLv+reGid++l++yk+hsn++GvW
  CCD23561.1  23 DSSVYTQLHRYPTISKFLTKFQSTPLISKASSVLGSMESKMDA------SAPPVIKKGINKVLMFLMSIDQLINLLVFREGIDSFLKTYKNHSNHVGVW 115
                 699***************************************9......9************************************************* PP

       PET10 100 lvyflvDYlANvsNilLkefvvkplklksekksee..........aktskktesknLPhvkeLsstTkslskdlqskvk.sdyieptkdkalekydslv 187
                 +++f+vDY+AN+sNi+L+efv+kpl+l+ +kk++e           k++ k++ ++LPh++eLs+tT+sl++dlqs+v+ s+yi++tkdka+ek+ds++
  CCD23561.1 116 ILWFIVDYFANISNIILHEFVIKPLHLNISKKNNEtpeesiknitGKSDGKKTIASLPHLAELSNTTRSLREDLQSRVTnSNYITQTKDKAYEKLDSIM 214
                 *********************************999*******9989999***************************962678**************** PP

       PET10 188 kPtadklqseyvdptkekinetYktvsetYesnLnksesvprAivsTgvdlgnlTleklksv 249
                 kPt+d+++            etYktvs++YesnL+ks+svprAivsTgv++g+lTl+klksv
  CCD23561.1 215 KPTYDSAK------------ETYKTVSDSYESNLHKSDSVPRAIVSTGVEIGSLTLDKLKSV 264
                 *******9............9***************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1070  (0.0596798); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2166.04
//
Query:       CCD23562.1  [L=434]
Description: hypothetical protein NDAI_0B05290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-86  288.2  13.5    5.2e-86  288.2  13.5    2.0  2  NAP        Nucleosome assembly protein (NAP)


Domain annotation for each model (and alignments):
>> NAP  Nucleosome assembly protein (NAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.2  13.5   2.9e-90   5.2e-86       2     269 ..      95     380 ..      94     381 .. 0.92
   2 ?   -6.3   7.5         1   1.8e+04     228     243 ..     394     408 ..     384     430 .. 0.37

  Alignments for each domain:
  == domain 1  score: 288.2 bits;  conditional E-value: 2.9e-90
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--S.................................--SSSSTTSTTHHHHHH CS
         NAP   2 rveaLkklqkelskleaefqeevlelekkyaalykplyekrseIingesepteeeveakede..keeee..eeeekeeekeeekkeeakgipeFWltvl 96 
                 r+ aLkklq++l ++e++fq e++ele+ky ++ykpl+e+rs+Ii+g ++p++ee++++++   +e+e+  +eee+ee +e++++++ kgip+FWlt+l
  CCD23562.1  95 RMFALKKLQNDLFQMEKDFQIEMFELENKYLNKYKPLFERRSNIISGVEQPSKEEISKGKEMilEENEDfvNEEEEEEGEEKKENQNIKGIPSFWLTAL 193
                 889*****************************************************999887763333377899999999999**************** PP

                 HTSHHHHTT--HHHHHHHTTEEEEEEEE-------EEEEEEEE.-S-SSB--SEEEEEEEE----.........----EEEEEE----B-T.T--TTS- CS
         NAP  97 knvellaeliqerDepiLkhLkdirveyllskekegFtleFeF.deNpyFtnevLtktyilksev.dkedpfiydgpeiekaegckIdWke.gkdvtvk 192
                 +n + +++ i+erD+ +L++L di++eyl ++ k+gF+l F+F +eNp+Ft+++L+kty++++e  +++d fiyd     +aeg++I+Wk+ +++vtv+
  CCD23562.1 194 ENLPNVSDKITERDAAVLEYLLDISMEYL-TEGKPGFKLIFKFsKENPFFTDKELVKTYYYQNELgYSGD-FIYD-----HAEGQEINWKDsESNVTVN 285
                 ****************************5.666**********99********************66666.****.....**********99******* PP

                 ---------...-------------GGGGS--B--------..................-------HHHHHHHHHHHHHHHHHTHHHHHHHHHHT CS
         NAP 193 tvkkkqknkktketrtvtkkvpkeSFFnfFsppkvpeeeee..................eeeeeeeleelleadyeigealkdkiiPkAveyFtg 269
                 ++++kq+nk tk++rt++k +p+eSFFnfF+ppk+pe+++                   +++e ++le++l  dy ige+lkdk+iP+A+++Ftg
  CCD23562.1 286 VETRKQRNKVTKQVRTIEKLTPTESFFNFFDPPKMPEHDHAegeecnhdhdhgndeydaDDDELDNLEDRLGLDYLIGEQLKDKLIPRAIDWFTG 380
                 *************************************9444555666777788888877777778888**************************9 PP

  == domain 2  score: -6.3 bits;  conditional E-value: 1
                 -------------HHH CS
         NAP 228 peeeeeeeeeeeelee 243
                 +eee+++e+++++  e
  CCD23562.1 394 EEEEDDDEDDDDDD-E 408
                 11111111111111.1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1305  (0.0727871); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        49  (0.002733); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 2918.50
//
Query:       CCD23563.1  [L=1235]
Description: hypothetical protein NDAI_0B05300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-46  159.0   7.7    2.1e-46  159.0   7.7    4.0  5  ArAE_2_N  Putative ER transporter, 6TM, N-terminal
    4.8e-13   49.3  14.9    4.8e-13   49.3  14.9    3.0  2  FUSC_2    Fusaric acid resistance protein-like
    4.4e-06   26.7   0.3    9.6e-06   25.6   0.3    1.5  1  ArAE_2    Aromatic acid exporter family member 2
    0.00075   18.5   6.7    0.00075   18.5   6.7    3.7  4  ALMT      Aluminium activated malate transporter
  ------ inclusion threshold ------
       0.21    9.2   1.0       0.34    8.5   1.0    1.2  1  ACR_tran  AcrB/AcrD/AcrF family


Domain annotation for each model (and alignments):
>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   7.7   5.8e-50   2.1e-46       7     407 ..      47     398 ..      41     458 .. 0.85
   2 ?   -4.2   0.1       1.8   6.5e+03     300     325 ..     474     499 ..     473     502 .. 0.83
   3 ?   -0.6   3.5      0.14   5.1e+02      18      87 ..     639     711 ..     625     727 .. 0.74
   4 ?   -6.8   3.0         5   1.8e+04     167     218 ..     742     795 ..     738     800 .. 0.64
   5 ?   -0.5   0.1      0.13   4.7e+02     323     420 ..     957    1066 ..     947    1079 .. 0.46

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 5.8e-50
    ArAE_2_N   7 lldhl.dlrsfKvifRswvavwvaiiLmvipptarwlGtaayLllivsvivpsGggsvivfilialllllgiclawawaviamkianrarpdaitqarl 104
                  ++++ d++   +i++ +v++++a+i+++ip++ ++lGt + +l+++sviv + g++v  ++ +a+ + +g+++++a+a++ + +a ++ +d       
  CCD23563.1  47 QYYFPcDRILTQRIIKATVNTTIAFIFCLIPKVRAQLGTEPAMLPLISVIVQP-GRRVGATFKAAINCTTGLIFGLAYAIFGRVLAHQCMGD------- 137
                 5556668888999****************************************.9***********************************88....... PP

    ArAE_2_N 105 aqllieeglcantsgaelaacaqeqvydgkmltarvsvvyavllcvflffvgrlrakspkfalgaifgiIaadvfltyapmlPlf.apgtlglallkPm 202
                               +++  ++++++ ++  ++ + +  ++a+l  ++lff+g++r+ ++ + ++++f+++ +   +++++m  l  ++g ++ + ++P+
  CCD23563.1 138 --------------SWNKLTEVEQYSMNFTRYRSAL-GILAMLETFMLFFHGWMRSVNH-LNFAIVFPLFLV---VHFGFMASLTeSAGVIANTFSTPF 217
                 ..............99******************99.89********************.***********9...*********99************* PP

    ArAE_2_N 203 giglalkvvvsllifPttssfqvlktmlkllkllkkalkfnsnflatlepsnese.wlnfkklekditkirslypkleaelaflplEfsigrfsaedvk 300
                 ++g+a+++++ l +fP+ +s ++ + + +  ++l+ a++ + +f+ +le s  ++ +  ++kl k++t i ++++ +  +l ++++E+s++++ ++++k
  CCD23563.1 218 YLGIAMSLFWTLTLFPEFGSSYLGNAAVDTFNELHRAIDDSVSFFISLENSIYTKpPTTLSKLLKAKTTIEKKVNDCGLVLKECIYEISYSYVPPTELK 316
                 ***************************************************988877899*************************************** PP

    ArAE_2_N 301 elrstlrrlissiagLvyfydlleelravilkserssklaanghakldseieekkrevgayet.kksielleardaqrsltlsdldeviealrelsgei 398
                 ++ +  ++l++ i+gLv+  +l + l+                         ++++++g+  t  k+i+ ++  +++ s+ l++l+  i+ l++++++ 
  CCD23563.1 317 PILENFQKLTIHINGLVNAGQLEFILLG------------------------KHQNDMGNADTiHKEITFAN--AQKLSEILENLKIPIYELHRSMSQN 389
                 **********************999977........................23345555433033333333..6666666666666666666666666 PP

    ArAE_2_N 399 leaveegle 407
                 l+ ++++++
  CCD23563.1 390 LYIMKLLIA 398
                 666666655 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.8
    ArAE_2_N 300 kelrstlrrlissiagLvyfydllee 325
                 +++++t+  l+s++ +  ++++ + e
  CCD23563.1 474 MNFKQTVNSLLSMMESVNEIHQFRLE 499
                 67999999999999999999998776 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.14
    ArAE_2_N  18 vifRswvavwvaiiLmvipptarwl....GtaayLllivsvivpsGggsvivfilialllllgiclawawavia 87 
                   f  ++a+ +a++ m+ip+t +w     G+   +++i+ v  +s g    vf+l a+ ++lg  ++++  v  
  CCD23563.1 639 FGFQVAIALMMASFPMFIPKTRHWYidyrGPWIGFVCILCV-ETSVGETFWVFFLRAVGCILGAAWGYLSYVAG 711
                 556778999999999*********74544555555565555.45558888999999999999999999876655 PP

  == domain 4  score: -6.8 bits;  conditional E-value: 5
    ArAE_2_N 167 lgaifgiIaadvfltyapmlPlfapgtlglallk...PmgiglalkvvvsllifP 218
                  +ai++iI + + + +a + P+  pg + ++  k   ++g g ++ ++v + +fP
  CCD23563.1 742 KAAIIYIISIYI-VMIASIIPSSVPGGILVNFAKrclAVGYGGGIALIVQVFFFP 795
                 577888888855.456677777777777766666444556666666666666676 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.13
    ArAE_2_N  323 leelravil.kserssklaa...nghakldseieekk...revgayetkksiellear...daqrsltlsdldevi...ealrelsgeileaveegl 406 
                  + +++++++ +  r++ la    ++++k +s+ + ++   +++  +++ ++++l ++    +++ +++ + l+e     +a ++ + ei+e +ee+l
  CCD23563.1  957 MINKVRMVIkNRYRTELLALnneKSKRKDESKEDSDYsdsDDISPMNSVEGLTLRTKGyneAIKMTTQEHLLEEKFlswNASSSATEEIVEYMEELL 1053
                  4444444443444444444454323333333333333333344444444444444432444333333333333333113444444455555555555 PP

    ArAE_2_N  407 etivewleaanefR 420 
                    + + l  +nef+
  CCD23563.1 1054 R-LTKLLVGVNEFK 1066
                  3.466777777777 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   9.1       1.7   6.2e+03      14      56 ..      87     130 ..      69     230 .. 0.64
   2 !   49.3  14.9   1.3e-16   4.8e-13       4     127 .]     655     789 ..     644     789 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.7
      FUSC_2  14 geWalitaaivlsp.tlgasltravqRilGtvlGavlallllyl 56 
                 + +++++ +iv  +  +ga+++ a++ + G ++G++ a++  +l
  CCD23563.1  87 PAMLPLISVIVQPGrRVGATFKAAINCTTGLIFGLAYAIFGRVL 130
                 556666666666556********************999985442 PP

  == domain 2  score: 49.3 bits;  conditional E-value: 1.3e-16
      FUSC_2   4 liaellgl...wrgeWalitaaivlsptlgasltravqRilGtvlGavlallllyllpgn....lalallvfllvfliafflkrny..alafifltlla 93 
                 +i+ ++++   +rg W+++++++++++++g++++ ++ R +G++lGa++++l+++++ ++    l ++++vf +v  ++f+++++y  a+++ ++++++
  CCD23563.1 655 FIPKTRHWyidYRGPWIGFVCILCVETSVGETFWVFFLRAVGCILGAAWGYLSYVAGIHQtnpyLETVITVFGAVPGFYFLIGSPYlkAAIIYIISIYI 753
                 444444445557999***************************************87776444778899******************7655556678999 PP

      FUSC_2  94 lllyslaa..gsgnpieialhRlldvliGiliallv 127
                 ++++s+     +g+    +  R+l+v  G+ ial+v
  CCD23563.1 754 VMIASIIPssVPGGILVNFAKRCLAVGYGGGIALIV 789
                 999999866545555558999*************96 PP

>> ArAE_2  Aromatic acid exporter family member 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.3   2.7e-09   9.6e-06      49     226 ..     840    1061 ..     824    1063 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 2.7e-09
      ArAE_2   49 qirkkilevleklaglkgllvllkfElslkGrwps..kkyarlqalvselvqllarLlvvlkrlepeewlkrllrrvglldpeliadvlavlsmasq 143 
                  q +k++ ++ + l++++   ++ + E+ lkG++ +  + + +++ l++++++     +v+ +     + +++l + v     +++a ++ ++  +++
  CCD23563.1  840 QSSKVSSSAKAALNRATVYNGMTRQEPRLKGEFTEleNIFTQVIFLQKQIIERMDNVAVLRNLY-GSAIIEELNDIVYPYRRHFVASMVCLMRAIQE 935 
                  55777888889999999999*************9633679***************998877766.99****************************** PP

      ArAE_2  144 aLktGdpLPeilp.apLvkrhlellrkqlklee..........................................seeeadslaealslellrsedg 197 
                  a  +++pLP++lp a++++r++  + +   +++                                            +  ++  +  ++e l +e+ 
  CCD23563.1  936 AFVNKTPLPQFLPsAKITHRRMINKVRMVIKNRyrtellalnnekskrkdeskedsdysdsddispmnsvegltlRTKGYNEAIKMTTQEHLLEEKF 1032
                  ************9457888887777766666667888888888888888888888888888888888888877766666677777777777777888 PP

      ArAE_2  198 rrfivalsialkildrlDelvlvvKglvG 226 
                  ++  ++ s++  i++ + el+  +K lvG
  CCD23563.1 1033 LSWNASSSATEEIVEYMEELLRLTKLLVG 1061
                  88888888888888888888888787777 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   2.0      0.02        71     151     202 ..     213     264 ..      61     293 .. 0.71
   2 ?   -4.8   0.9       2.3   8.4e+03     367     387 ..     558     588 ..     539     615 .. 0.35
   3 !   18.5   6.7   2.1e-07   0.00075      12     192 ..     638     816 ..     631     865 .. 0.74
   4 ?   -1.0   0.6      0.16   5.9e+02     337     424 ..     958    1043 ..     924    1059 .. 0.45

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.02
        ALMT 151 RfltiaiGaliclivsifvfPiwaGedLhklvaknleklakslegcvdeyle 202
                  +    +G++++l+ ++++fP +  + L +  +  +++l +++++ v+ +++
  CCD23563.1 213 FSTPFYLGIAMSLFWTLTLFPEFGSSYLGNAAVDTFNELHRAIDDSVSFFIS 264
                 4445679*****************9****************99998875554 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 2.3
        ALMT 367 eeveekkeeekeseskkeea..........e 387
                 ee+e  ++++++ +++++++          +
  CCD23563.1 558 EEEEVLESQKQNINQTRRSTvglpivnpnrR 588
                 2222222222222222222233334333321 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 2.1e-07
        ALMT  12 vfslkvGlaltLvsllyflrplyk.elgknavWailTVvvvlefsvGATlskGlnRalaTliAGglalgvselasssgkileeivigvsvFiiaalatf 109
                  f ++v++al + s+ +f+ +  +  +   + W     ++  e svG T+   + Ra++ +++ + + +    +   g    +  + +++ +++a+  f
  CCD23563.1 638 RFGFQVAIALMMASFPMFIPKTRHwYIDYRGPWIGFVCILCVETSVGETFWVFFLRAVGCILGAAWGYL----SYVAGIHQTNPYLETVITVFGAVPGF 732
                 56777888888888888876554415666788988889999******************9987777754....44444333344455555566666666 PP

        ALMT 110 lrli..PaikarYdYgvlvflLTFclvvvsgyrtdevielAvkRfltiaiGaliclivsifvfPiwaGedLhklvaknleklaks 192
                   li  P++ka   Y + +++   + ++ s+   + +++ A kR l +  G++i+liv +f+fP+ a ++L  ++a   + +a++
  CCD23563.1 733 YFLIgsPYLKAAIIYIISIYIVMIASIIPSSVPGGILVNFA-KRCLAVGYGGGIALIVQVFFFPVKARDELNAEIAFTCKCIAEM 816
                 666444*************************9999999998.7****************************99999888888763 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.16
        ALMT  337 aeeLqskldskskLlvnsekweaakkkekaeeveekkeeekeseskkeea......eaveeaeseseksllkeskrslklskkesapaeeslee 424 
                  ++++++ +++++   + + ++e++k+k +++e ++++  ++++ s  + +      +++  +e+ + +++ +  ++++ +++ +s+++     e
  CCD23563.1  958 INKVRMVIKNRYRTELLALNNEKSKRKDESKEDSDYS--DSDDISPMN-SvegltlRTKGYNEAIKMTTQEHLLEEKFLSWNASSSAT-----E 1043
                  5556666665553333222222222222222222211..112222222.122233333333333333333333333333333333333.....3 PP

>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.0   9.5e-05      0.34     425     499 ..     176     249 ..     162     288 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 9.5e-05
                 HHHHHHHHHHHHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHS---STT-CT CS
    ACR_tran 425 lksmkeiqgalvaialvllavflPilflgGveGklfrqfaltivlaillsvlvaltltPalcallLkerkeekek 499
                 ++s++ +++a+v+  l l++ f  +++l+ + G + + f+    l i++s++  ltl P   +  L +      +
  CCD23563.1 176 MRSVNHLNFAIVFP-LFLVVHFGFMASLTESAGVIANTFSTPFYLGIAMSLFWTLTLFPEFGSSYLGNAAVDTFN 249
                 68899999999986.668899999************************************999999887765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1031  (0.0575046); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.44
# Mc/sec: 8498.87
//
Query:       CCD23564.1  [L=361]
Description: hypothetical protein NDAI_0B05310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-72  241.0   0.0    6.7e-72  240.6   0.0    1.2  1  UFD1      Ubiquitin fusion degradation protein UFD1


Domain annotation for each model (and alignments):
>> UFD1  Ubiquitin fusion degradation protein UFD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.6   0.0   3.7e-76   6.7e-72       1     173 []      21     199 ..      21     199 .. 0.98

  Alignments for each domain:
  == domain 1  score: 240.6 bits;  conditional E-value: 3.7e-76
        UFD1   1 feekyrcysvsm...kaereelekggkiiLPpsaLdeLtrlnieyPmlFelsnkkkkksthagVleFtaeegtvylPewmmenlgleegdlveiesvsl 96 
                 fee++rcy++ m   + +++++++ggki+LPpsaL++L+ lni+yPmlF+l+ +++ k th gVleFtaeeg+vylP+wmm++l+++ g+l++i s+++
  CCD23564.1  21 FEEYFRCYPIVMmndRIRKDDANYGGKIFLPPSALNKLSMLNIRYPMLFQLTASESGKMTHGGVLEFTAEEGRVYLPQWMMQTLNVQPGSLLKIDSTDV 119
                 899********99988899*********************************99********************************************* PP

        UFD1  97 pkgkfvklqpqsedfldisdpkavLekaLrnfatLtkgdvieikyndkvyelkvlevkpes...avsiietdlevdfaeP 173
                 p g+fvk++pqs+dfldisdpkavLe+ Lrnf+tLt++d+iei+yn+k+y +kvlevkpes   ++++ietdl  dfa+P
  CCD23564.1 120 PLGQFVKIEPQSTDFLDISDPKAVLENVLRNFSTLTVDDIIEISYNNKIYGIKVLEVKPESssrSICVIETDLVTDFAPP 199
                 ***********************************************************99999**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2841.95
//
Query:       CCD23565.1  [L=1038]
Description: hypothetical protein NDAI_0B05320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-11   42.2  20.3       0.13   12.5   0.1    9.4  9  TPR_2     Tetratricopeptide repeat
    3.9e-10   39.1  14.2      0.077   12.8   0.1    8.3  8  TPR_1     Tetratricopeptide repeat
    5.3e-10   39.7   8.6     0.0056   17.2   0.1    5.2  4  TPR_19    Tetratricopeptide repeat
    9.2e-09   35.5  16.7      0.067   13.5   0.3    6.8  7  TPR_12    Tetratricopeptide repeat
    1.7e-08   34.3  12.3       0.14   12.6   0.2    6.7  6  TPR_17    Tetratricopeptide repeat
      2e-08   34.4   6.0       0.66   10.7   0.0    6.2  5  TPR_6     Tetratricopeptide repeat
    5.1e-08   33.4   3.6     0.0062   17.2   0.3    4.8  5  TPR_16    Tetratricopeptide repeat
    5.1e-07   29.4  18.0     0.0069   16.5   0.1    8.1  9  TPR_8     Tetratricopeptide repeat
    7.6e-07   29.3  13.2      0.019   15.2   0.2    5.4  5  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
    0.00035   20.6   0.1       0.63   10.2   0.0    4.7  4  TPR_9     Tetratricopeptide repeat
     0.0033   17.1   5.6       0.11   12.3   0.2    4.3  4  TPR_11    TPR repeat
  ------ inclusion threshold ------
       0.01   16.2   1.4          3    8.3   0.0    3.9  4  TPR_20    Tetratricopeptide repeat
      0.012   16.4   5.4    1.1e+02    4.0   0.1    6.0  6  TPR_14    Tetratricopeptide repeat
        1.2    9.4   9.6         30    5.0   0.1    5.8  6  TPR_7     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.67   8.6e+02      10      31 ..     134     155 ..     128     158 .. 0.79
   2 ?    3.8   0.1     0.057        74       2      21 ..     160     179 ..     159     182 .. 0.86
   3 ?    3.4   0.0     0.078     1e+02       2      31 ..     194     223 ..     193     225 .. 0.86
   4 !   11.6   0.0   0.00019      0.24       2      33 ..     228     259 ..     227     260 .. 0.94
   5 ?    2.0   0.0      0.23   2.9e+02       3      26 ..     263     286 ..     261     291 .. 0.86
   6 ?    3.1   0.1     0.098   1.3e+02       6      26 ..     446     466 ..     442     472 .. 0.88
   7 !    9.8   0.1   0.00073      0.94       1      24 [.     476     499 ..     476     500 .. 0.94
   8 !   12.5   0.1   9.9e-05      0.13       7      34 .]     517     544 ..     512     544 .. 0.94
   9 ?    0.4   0.0      0.71     9e+02       5      29 ..     976    1000 ..     976    1004 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.67
       TPR_2  10 ayyklgdyeeAleafekAleld 31 
                  ++ + d++ A+++++++++ d
  CCD23565.1 134 EAFVRSDLQVAERLYNEVIKKD 155
                 5566668999*********987 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.057
       TPR_2   2 ealynlGlayyklgdyeeAl 21 
                  a+  lG++y  +g+++++ 
  CCD23565.1 160 AAYETLGEIYQLQGRLNDCC 179
                 5899***********98875 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.078
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                 e +   + + + l++  +A+ +f ++ +l+
  CCD23565.1 194 EFWKVVAILSADLDHIRQAIYCFSRVCALN 223
                 56777788889999*************998 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.00019
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 e ly++ l+y k g+  +Ale f+k  +++P 
  CCD23565.1 228 ESLYRRSLLYKKIGQIGRALEGFQKLYSHNPF 259
                 789***************************96 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.23
       TPR_2   3 alynlGlayyklgdyeeAleafek 26 
                 +l +l+ +y   ++ e+A++++ k
  CCD23565.1 263 ILRELAVLYVDYDRIEDAIDLYIK 286
                 6889****************9955 PP

  == domain 6  score: 3.1 bits;  conditional E-value: 0.098
       TPR_2   6 nlGlayyklgdyeeAleafek 26 
                 +lGl+ +++ +y eA  +f+ 
  CCD23565.1 446 RLGLLRLENEHYLEAMTHFQY 466
                 89*****************96 PP

  == domain 7  score: 9.8 bits;  conditional E-value: 0.00073
       TPR_2   1 aealynlGlayyklgdyeeAleaf 24 
                 a+++++ +la+ k+ +y+eA+++f
  CCD23565.1 476 ADLYFEVALALTKMEKYQEAIDFF 499
                 689******************998 PP

  == domain 8  score: 12.5 bits;  conditional E-value: 9.9e-05
       TPR_2   7 lGlayyklgdyeeAleafekAleldPnn 34 
                 lG++y +  +y+ A++++e ++e d +n
  CCD23565.1 517 LGRCYKETEQYALAKDYYETVVEMDGTN 544
                 8**********************99776 PP

  == domain 9  score: 0.4 bits;  conditional E-value: 0.71
       TPR_2    5 ynlGlayyklgdyeeAleafekAle 29  
                  yn+G+a    g    A+ +++k+l 
  CCD23565.1  976 YNIGRAFHLIGLVSIAITYYDKVLN 1000
                  788888888888889*******996 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.17   2.2e+02       3      19 ..     161     177 ..     159     178 .. 0.85
   2 ?    2.0   0.0      0.16   2.1e+02      17      32 ..     209     224 ..     195     226 .. 0.85
   3 ?    2.7   0.0     0.098   1.2e+02       2      32 ..     228     258 ..     227     260 .. 0.84
   4 ?    3.5   0.1     0.055        70       4      26 ..     264     286 ..     261     291 .. 0.85
   5 ?   -1.4   0.0         2   2.5e+03       6      25 ..     446     465 ..     442     465 .. 0.88
   6 !   12.8   0.1     6e-05     0.077       1      24 [.     476     499 ..     476     500 .. 0.94
   7 !   12.7   0.1   6.9e-05     0.089       7      34 .]     517     544 ..     517     544 .. 0.93
   8 ?    5.0   0.0     0.018        23       5      28 ..     976     999 ..     976    1003 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHTT-HHH CS
       TPR_1   3 alynlGnayfklgkyde 19 
                 a+  lG +y+ +g++++
  CCD23565.1 161 AYETLGEIYQLQGRLND 177
                 67789********9875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHST CS
       TPR_1  17 ydeAleyyekALelnP 32 
                   +A+ +++++  ln+
  CCD23565.1 209 IRQAIYCFSRVCALNH 224
                 679*********9997 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.098
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnP 32 
                 ++ly++ ++y k g+   Ale ++k  ++nP
  CCD23565.1 228 ESLYRRSLLYKKIGQIGRALEGFQKLYSHNP 258
                 57888889*************9999777766 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.055
                 HHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyek 26 
                 l  l+++y    + ++A++ y k
  CCD23565.1 264 LRELAVLYVDYDRIEDAIDLYIK 286
                 5679****************977 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 2
                 HHHHHHHHTT-HHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyye 25 
                 +lG++ ++++ y eA  +++
  CCD23565.1 446 RLGLLRLENEHYLEAMTHFQ 465
                 8999999********99997 PP

  == domain 6  score: 12.8 bits;  conditional E-value: 6e-05
                 HHHHHHHHHHHHHTT-HHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyy 24 
                 a+ ++  ++a+ k++ky+eA++++
  CCD23565.1 476 ADLYFEVALALTKMEKYQEAIDFF 499
                 7899999***************98 PP

  == domain 7  score: 12.7 bits;  conditional E-value: 6.9e-05
                 HHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   7 lGnayfklgkydeAleyyekALelnPnn 34 
                 lG +y + ++y  A +yye ++e + +n
  CCD23565.1 517 LGRCYKETEQYALAKDYYETVVEMDGTN 544
                 899********************99765 PP

  == domain 8  score: 5.0 bits;  conditional E-value: 0.018
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekAL 28 
                 yn+G a++  g    A+ yy+k+L
  CCD23565.1 976 YNIGRAFHLIGLVSIAITYYDKVL 999
                 9*********************98 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.024        31       5      43 ..     139     177 ..     135     178 .. 0.94
   2 !   14.2   0.0   3.7e-05     0.048       5      51 ..     241     287 ..     240     295 .. 0.91
   3 ?    3.9   0.4     0.059        75       2      52 ..     452     503 ..     451     509 .. 0.84
   4 !   17.2   0.1   4.4e-06    0.0056       5      57 ..     525     577 ..     522     586 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.024
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqlde 43 
                  d++ A +l+ +++++d+ n +a   L e++  +g+l++
  CCD23565.1 139 SDLQVAERLYNEVIKKDARNFAAYETLGEIYQLQGRLND 177
                 699*********************************986 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.7e-05
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51 
                 g+  +Al+ ++++++++p n++++  LA +++   ++++A++l  ++
  CCD23565.1 241 GQIGRALEGFQKLYSHNPFNSNILRELAVLYVDYDRIEDAIDLYIKI 287
                 79999***********************************9987666 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.059
      TPR_19   2 laegdyaeAlalleqalqe.dpknaearllLAeallalgqldeAealLdalp 52 
                 l+++ y eA+ +++++++e   + a++    A al ++  ++eA++   +l+
  CCD23565.1 452 LENEHYLEAMTHFQYLYDEdFEEIADLYFEVALALTKMEKYQEAIDFFLPLL 503
                 7889999********986636668888888899999********99877665 PP

  == domain 4  score: 17.2 bits;  conditional E-value: 4.4e-06
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 ++ya A +++e + + d  n e  l LAe+ ++lg++d  ++lL+++ +  + 
  CCD23565.1 525 EQYALAKDYYETVVEMDGTNVENILMLAEITYQLGNTDMFKELLARAKDLRKE 577
                 69*******************************************99876655 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.3   5.5e+03      60      72 ..     140     152 ..     128     156 .. 0.83
   2 ?    2.7   0.1      0.12   1.6e+02      46      61 ..     160     175 ..     138     177 .. 0.71
   3 !   10.2   0.0   0.00057      0.73      28      68 ..     245     284 ..     242     290 .. 0.91
   4 !   13.5   0.3   5.2e-05     0.067      24      68 ..     455     499 ..     454     505 .. 0.96
   5 !   10.8   0.1   0.00037      0.48      43      74 ..     509     540 ..     501     542 .. 0.84
   6 ?    0.6   0.1      0.55     7e+02       4      36 ..     547     578 ..     544     584 .. 0.80
   7 ?    3.2   0.2     0.088   1.1e+02       6      48 ..     975    1012 ..     971    1038 .] 0.66

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.3
      TPR_12  60 ryeeAlelleeal 72 
                 +++ A++l++e++
  CCD23565.1 140 DLQVAERLYNEVI 152
                 7889999999976 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.12
      TPR_12  46 ttlrnLgrlyralgry 61 
                 +++ +Lg++y+++gr+
  CCD23565.1 160 AAYETLGEIYQLQGRL 175
                 5677777777777775 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00057
      TPR_12  28 kaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 +ale +++l+  ++p  +++lr L+ ly   +r e+A++l+
  CCD23565.1 245 RALEGFQKLYS-HNPFNSNILRELAVLYVDYDRIEDAIDLY 284
                 89*******96.58*************************99 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 5.2e-05
      TPR_12  24 ellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlell 68 
                 e++ +a+  ++ l+++d ++ a  ++  + ++ ++++y+eA++++
  CCD23565.1 455 EHYLEAMTHFQYLYDEDFEEIADLYFEVALALTKMEKYQEAIDFF 499
                 699***************************************998 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.00037
      TPR_12  43 ltattlrnLgrlyralgryeeAlelleealai 74 
                 + ++ +  Lgr+y ++++y+ A +++e ++++
  CCD23565.1 509 QSIELYEPLGRCYKETEQYALAKDYYETVVEM 540
                 567777779******************99987 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.55
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrl 36 
                 ++l  la++ ++lg+ d   ell +a +++++ 
  CCD23565.1 547 NIL-MLAEITYQLGNTDMFKELLARAKDLRKEQ 578
                 555.699********999999999999998665 PP

  == domain 7  score: 3.2 bits;  conditional E-value: 0.088
      TPR_12    6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattl 48  
                   +n++ + +  g    A+++++k+l+ +++   + h     + 
  CCD23565.1  975 DYNIGRAFHLIGLVSIAITYYDKVLNNYSEEKLKRH-----AA 1012
                  568888888888888899999999999966644444.....33 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.2   0.00011      0.14       1      32 [.     147     178 ..     147     179 .. 0.94
   2 !    7.6   0.0    0.0045       5.7       1      34 []     215     248 ..     215     248 .. 0.90
   3 !    7.6   0.0    0.0042       5.3       2      31 ..     250     279 ..     250     282 .. 0.81
   4 ?    1.5   0.0      0.38   4.9e+02      13      33 ..     476     496 ..     470     497 .. 0.92
   5 ?   -2.5   0.1       7.4   9.5e+03      19      33 ..     517     531 ..     517     532 .. 0.88
   6 !    7.5   0.0    0.0045       5.8       1      31 [.     533     563 ..     533     566 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtA 32 
                 ly +++++d  n+ ay  L+e++  +G+l ++
  CCD23565.1 147 LYNEVIKKDARNFAAYETLGEIYQLQGRLNDC 178
                 79*************************98765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0045
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 ++ ++ +l++  +++++ +  l++k+G+ ++A++
  CCD23565.1 215 CFSRVCALNHEEWESLYRRSLLYKKIGQIGRALE 248
                 567888999999*******************985 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0042
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmt 31 
                 ++k   ++P n++ + +LA+l+    + ++
  CCD23565.1 250 FQKLYSHNPFNSNILRELAVLYVDYDRIED 279
                 678889***************976555555 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.38
      TPR_17  13 adaynnLAelllknGdlmtAr 33 
                 ad+y++ A +l k  ++++A+
  CCD23565.1 476 ADLYFEVALALTKMEKYQEAI 496
                 89*****************97 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 7.4
      TPR_17  19 LAelllknGdlmtAr 33 
                 L++++++  +++ A+
  CCD23565.1 517 LGRCYKETEQYALAK 531
                 899*******99886 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.0045
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmt 31 
                 +y+ ++e d +n++   +LAe+ +++G++++
  CCD23565.1 533 YYETVVEMDGTNVENILMLAEITYQLGNTDM 563
                 69***********************999985 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0017       2.1       1      28 [.     228     255 ..     228     259 .. 0.89
   2 ?   -0.9   0.0       2.5   3.3e+03       4      24 ..     445     465 ..     442     470 .. 0.83
   3 ?    0.4   0.1      0.99   1.3e+03       3      23 ..     479     499 ..     477     500 .. 0.87
   4 !   10.4   0.0   0.00067      0.85       6      28 ..     517     539 ..     516     540 .. 0.92
   5 !   10.7   0.0   0.00052      0.66       1      31 [.     973    1003 ..     973    1004 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   1 dAlyklalsyrklgdtdkAlealerlik 28 
                 ++ly++ l+y+k g+  +Ale +++l +
  CCD23565.1 228 ESLYRRSLLYKKIGQIGRALEGFQKLYS 255
                 68**********88***********955 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.5
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAleale 24 
                  +l+l++++   + +A++ ++
  CCD23565.1 445 VRLGLLRLENEHYLEAMTHFQ 465
                 689*****966999**99998 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.99
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAleal 23 
                 ++  al++ k+ ++++A++ +
  CCD23565.1 479 YFEVALALTKMEKYQEAIDFF 499
                 78999*****88*****9976 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00067
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlik 28 
                 l+++y+++ +++ A++++e +++
  CCD23565.1 517 LGRCYKETEQYALAKDYYETVVE 539
                 79*****77**********9986 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00052
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6    1 dAlyklalsyrklgdtdkAlealerlikeYP 31  
                  +A y++++++   g  + A++++++++++Y 
  CCD23565.1  973 EADYNIGRAFHLIGLVSIAITYYDKVLNNYS 1003
                  688*********88****************5 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   4.9e-06    0.0062       1      50 [.     129     175 ..     129     177 .. 0.95
   2 ?    2.7   0.0      0.16   2.1e+02       6      57 ..     236     284 ..     215     287 .. 0.87
   3 !    9.7   0.2     0.001       1.3       3      57 ..     447     499 ..     445     503 .. 0.95
   4 ?   -0.7   0.0       1.8   2.4e+03       9      27 ..     523     541 ..     517     556 .. 0.74
   5 ?   -2.0   0.0       4.8   6.1e+03      53      61 ..     991     999 ..     970    1036 .. 0.52

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.9e-06
      TPR_16   1 lalaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrl 50 
                 l +a++a+ + d + A++++++++k+d    ++ +A+  lg+++  qgrl
  CCD23565.1 129 LSEANEAFVRSDLQVAERLYNEVIKKD---ARNFAAYETLGEIYQLQGRL 175
                 5789***********************...**************999997 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.16
      TPR_16   6 aalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaaly 57 
                 ++ + g+  +A++ ++ +   +   P++   l +l++++    r ++A++ly
  CCD23565.1 236 LYKKIGQIGRALEGFQKLYSHN---PFNSNILRELAVLYVDYDRIEDAIDLY 284
                 5666688888998899999999...**************9999999999776 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.001
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaaly 57 
                 l++++l++ +y +A   ++ + + d    + a+ +++ ++a+ +   ++eA++++
  CCD23565.1 447 LGLLRLENEHYLEAMTHFQYLYDED--FEEIADLYFEVALALTKMEKYQEAIDFF 499
                 8999*********************..899**********************998 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.8
      TPR_16   9 ragdyddAaaaleaalkrd 27 
                 +  +y+ A  ++e+++++d
  CCD23565.1 523 ETEQYALAKDYYETVVEMD 541
                 4567777777787777776 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 4.8
      TPR_16  53 Aaalyraal 61 
                 A+ +y++ l
  CCD23565.1 991 AITYYDKVL 999
                 444444433 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.83   1.1e+03       3      18 ..     161     176 ..     159     180 .. 0.87
   2 ?    5.1   0.0     0.025        32       2      29 ..     228     255 ..     228     260 .. 0.85
   3 ?   -2.3   0.1       5.8   7.5e+03       7      29 ..     267     289 ..     266     291 .. 0.81
   4 ?   -2.1   0.0       4.9   6.2e+03       3      24 ..     443     464 ..     441     465 .. 0.84
   5 !    7.7   0.1    0.0036       4.6       1      24 [.     476     499 ..     476     503 .. 0.94
   6 !   16.5   0.1   5.4e-06    0.0069       7      32 ..     517     542 ..     511     544 .. 0.88
   7 ?    3.1   0.1      0.11   1.4e+02       5      32 ..     549     576 ..     545     578 .. 0.88
   8 ?    1.7   0.0      0.29   3.7e+02       5      28 ..     976     999 ..     974    1003 .. 0.92
   9 ?   -2.2   0.0       5.2   6.7e+03      10      29 ..    1018    1037 ..    1018    1038 .] 0.80

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.83
                 HHHHHHHHHHHTT-HH CS
       TPR_8   3 ayynlgsiylklgdye 18 
                 ay  lg iy+ +g+++
  CCD23565.1 161 AYETLGEIYQLQGRLN 176
                 7999******999986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.025
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 e++y+ +++y+k g++  A e ++k  +
  CCD23565.1 228 ESLYRRSLLYKKIGQIGRALEGFQKLYS 255
                 689****************998888766 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 5.8
                 HHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekale 29 
                 l+ +y +  ++e A+  y k  e
  CCD23565.1 267 LAVLYVDYDRIEDAIDLYIKIFE 289
                 78889999999999999988766 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 4.9
                 HHHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyy 24 
                 + ++lg++ l+ + y eA+  +
  CCD23565.1 443 IRVRLGLLRLENEHYLEAMTHF 464
                 56799999999****9999876 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0036
                 CCHHHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyy 24 
                 a++y+  ++++ k+++y+eA+ ++
  CCD23565.1 476 ADLYFEVALALTKMEKYQEAIDFF 499
                 689******************998 PP

  == domain 6  score: 16.5 bits;  conditional E-value: 5.4e-06
                 HHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldp 32 
                 lg++y+++++y  Ak yye ++e+d 
  CCD23565.1 517 LGRCYKETEQYALAKDYYETVVEMDG 542
                 9***********************96 PP

  == domain 7  score: 3.1 bits;  conditional E-value: 0.11
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldp 32 
                 ++l+ i  +lg+ ++ ke + +a +l++
  CCD23565.1 549 LMLAEITYQLGNTDMFKELLARAKDLRK 576
                 6899999**************9999876 PP

  == domain 8  score: 1.7 bits;  conditional E-value: 0.29
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekal 28 
                 yn+g++ +  g    A+ yy k+l
  CCD23565.1 976 YNIGRAFHLIGLVSIAITYYDKVL 999
                 89999999999999********98 PP

  == domain 9  score: -2.2 bits;  conditional E-value: 5.2
                  HHHHTT-HHHHHHHHHHHHH CS
       TPR_8   10 iylklgdyeeAkeyyekale 29  
                  iy++ g++e A + ++ +l+
  CCD23565.1 1018 IYQESGNIELANSLMRDYLT 1037
                  799******99777777665 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.2    0.0031       3.9      11      81 ..     143     218 ..     137     219 .. 0.80
   2 !   15.2   0.2   1.5e-05     0.019       4      81 ..     208     286 ..     205     287 .. 0.93
   3 !    9.3   0.6   0.00099       1.3      35      79 ..     453     499 ..     445     502 .. 0.65
   4 !    7.5   0.0    0.0037       4.7      24      72 ..     509     561 ..     501     563 .. 0.85
   5 ?   -0.7   0.0       1.3   1.7e+03      18      47 ..     880     912 ..     872     933 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0031
                 HHHHHH.....HHH--HHHHHHHHHHHHHTT-HHHHHH.HHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  11 laerll....aaetespedayllAlclylngqykrAye.llrkaklnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 +aerl+    ++++++  +   l++ + l+g+ + +++ ++  a +ns++ + + + A  + +L+++ +Ai ++++
  CCD23565.1 143 VAERLYneviKKDARNFAAYETLGEIYQLQGRLNDCCNsWFLAAHINSTDWEFWKVVAILSADLDHIRQAIYCFSR 218
                 68888853334556666666668**********99986467777899************************99876 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.5e-05
                 -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 +++ Ai +++r++a ++e  e++y  +l + + gq  rA+e ++k+   n+ + +++  +A  +++++++e+Ai+++ k
  CCD23565.1 208 HIRQAIYCFSRVCALNHEEWESLYRRSLLYKKIGQIGRALEGFQKLySHNPFNSNILRELAVLYVDYDRIEDAIDLYIK 286
                 6789******************************************8889999999999***************99765 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00099
                 HTT-HHHHHHHHHCT.SHHHC-HHHHHH.HHHHHHHTT-HHHHHHHH CS
      ANAPC3  35 lngqykrAyellrka.klnskslgcryl.fAqcllkLkkyeeAiaaL 79 
                 +n+ y +A++ ++ + +++ + ++ +y   A +l k++ky+eAi+ +
  CCD23565.1 453 ENEHYLEAMTHFQYLyDEDFEEIADLYFeVALALTKMEKYQEAIDFF 499
                 56667777777777766666666555553566777777777777765 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0037
                 HHHHHH...HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-H CS
      ANAPC3  24 edayll...AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkky 72 
                 +++ l+   + c+ +++qy  A +++++  + ++++ +  + +A+  ++L++ 
  CCD23565.1 509 QSIELYeplGRCYKETEQYALAKDYYETVvEMDGTNVENILMLAEITYQLGNT 561
                 5555544449****************************************986 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.3
                 HHH--HHHHHHH...HHHHHHTT-HHHHHHHHH CS
      ANAPC3  18 aetespedayll...AlclylngqykrAyellr 47 
                 +++e  +++yl+   A  ly++  + + +++l+
  CCD23565.1 880 TNPEKKSSLYLYyiyAVLLYSSRGFVSSLQYLS 912
                 456666676664444999999988877777765 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00049      0.63       9      60 ..     207     258 ..     200     271 .. 0.88
   2 ?   -0.4   0.1         1   1.3e+03      35      55 ..     447     467 ..     440     475 .. 0.84
   3 ?    2.0   0.0      0.19   2.4e+02      29      50 ..     476     497 ..     472     499 .. 0.90
   4 ?    0.8   0.0      0.42   5.3e+02       3      45 ..     519     561 ..     517     563 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00049
       TPR_9   9 edweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 ++  +a+ +  r+ +l+++++e ++ R ll+ + G++  Al+ ++   +++p
  CCD23565.1 207 DHIRQAIYCFSRVCALNHEEWESLYRRSLLYKKIGQIGRALEGFQKLYSHNP 258
                 77889999***********************************999988888 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1
       TPR_9  35 RGlllaqlGclsaAladLeay 55 
                  Gll+ + +++ +A+  +++ 
  CCD23565.1 447 LGLLRLENEHYLEAMTHFQYL 467
                 79*************999985 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.19
       TPR_9  29 peerrdRGlllaqlGclsaAla 50 
                 ++++++ +l+l +++ +++A++
  CCD23565.1 476 ADLYFEVALALTKMEKYQEAID 497
                 67899***************86 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.42
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGcl 45 
                 +++ + e+++ a  ++e ++ ++   +e ++  + + +qlG++
  CCD23565.1 519 RCYKETEQYALAKDYYETVVEMDGTNVENILMLAEITYQLGNT 561
                 5677888999999999999999999999999999999999975 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.2   8.2e-05      0.11      17      42 .]     148     173 ..     140     173 .. 0.95
   2 ?    4.2   0.0     0.027        35      12      42 .]     211     241 ..     208     241 .. 0.94
   3 ?   -1.0   0.0       1.2   1.5e+03       7      21 ..     489     496 ..     483     498 .. 0.57
   4 ?   -2.8   0.1         4   5.2e+03       4      42 .]     521     559 ..     518     559 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.2e-05
      TPR_11  17 YkkAlkldPdnaeayynLGlayykqG 42 
                 Y++ +k d  n  ay  LG++y+ qG
  CCD23565.1 148 YNEVIKKDARNFAAYETLGEIYQLQG 173
                 ***********************998 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.027
      TPR_11  12 eAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 +Ai ++++ ++l+ +  e +y + l+y k G
  CCD23565.1 211 QAIYCFSRVCALNHEEWESLYRRSLLYKKIG 241
                 8**********************99999987 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.2
      TPR_11   7 qGkyeeAieaYkkAl 21 
                   k       Y++A+
  CCD23565.1 489 MEK-------YQEAI 496
                 455.......55555 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 4
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 y e  +y  A   Y++ ++ d +n+e  + L+++ y++G
  CCD23565.1 521 YKETEQYALAKDYYETVVEMDGTNVENILMLAEITYQLG 559
                 667777777777888888888888776666666666655 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0023         3       8      53 ..     247     292 ..     243     300 .. 0.88
   2 ?   -1.6   0.0       2.7   3.5e+03      23      46 ..     442     465 ..     440     477 .. 0.85
   3 ?    3.8   0.0     0.056        71      23      50 ..     477     504 ..     471     509 .. 0.89
   4 ?   -2.1   0.1       3.9     5e+03      26      69 ..     751     793 ..     747     808 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0023
      TPR_20   8 laeleaalaanpddldarldlAlallaagryeeAleqLleilkrdr 53 
                 l+ +++ +  np + ++  +lA +++   r e+A+++ ++i++++ 
  CCD23565.1 247 LEGFQKLYSHNPFNSNILRELAVLYVDYDRIEDAIDLYIKIFEANV 292
                 5667888899*******************************99876 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.7
      TPR_20  23 darldlAlallaagryeeAleqLl 46 
                 d+r+ l l+ l++++y eA++++ 
  CCD23565.1 442 DIRVRLGLLRLENEHYLEAMTHFQ 465
                 78999***************9875 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.056
      TPR_20  23 darldlAlallaagryeeAleqLleilk 50 
                 d+ +++Alal + ++y+eA++ +l +l 
  CCD23565.1 477 DLYFEVALALTKMEKYQEAIDFFLPLLN 504
                 6789*****************9988775 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 3.9
      TPR_20  26 ldlAlallaagryeeAleqLleilkrdrkweddaarkqllkife 69 
                 ++lAl  +  +  e+A++  +e  +    +++d  r +++k+++
  CCD23565.1 751 MKLALTIARYQSIEDAIS-VIETAQDVNVFNQDPERVKMMKFIK 793
                 567777777778888875.4677777777889999999988876 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1      0.09   1.1e+02      14      43 ..     138     167 ..     123     168 .. 0.78
   2 ?   -2.2   0.0       8.8   1.1e+04       3      36 ..     195     228 ..     193     236 .. 0.74
   3 ?    4.0   0.0     0.091   1.2e+02       2      43 ..     228     269 ..     227     270 .. 0.92
   4 ?    2.8   0.1      0.22   2.8e+02       3      37 ..     263     297 ..     261     302 .. 0.85
   5 ?    3.8   0.0       0.1   1.3e+02       7      43 ..     517     553 ..     512     575 .. 0.91
   6 ?    0.1   0.0       1.6   2.1e+03       5      42 ..     892     929 ..     890     930 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.09
      TPR_14  14 lGdpdeAiallrralalaPddaeawlllaq 43 
                 + d++ A++l++++++++  + +a+  l++
  CCD23565.1 138 RSDLQVAERLYNEVIKKDARNFAAYETLGE 167
                 567888******************998886 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 8.8
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddae 36 
                  ++  a + + l+  ++Ai ++ r++al+ +++e
  CCD23565.1 195 FWKVVAILSADLDHIRQAIYCFSRVCALNHEEWE 228
                 5666677777888899999999999998766665 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.091
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 e l+++  ++   G+  +A++ ++++ +++P +  ++++la 
  CCD23565.1 228 ESLYRRSLLYKKIGQIGRALEGFQKLYSHNPFNSNILRELAV 269
                 778999999*************************99999996 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.22
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaea 37 
                  l++la ++   ++ ++Ai+l+ ++ +++ + +ea
  CCD23565.1 263 ILRELAVLYVDYDRIEDAIDLYIKIFEANVARREA 297
                 57899*****************9999888777666 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.1
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 l++ + + ++++ A ++++ +++ + ++ e  l+la+
  CCD23565.1 517 LGRCYKETEQYALAKDYYETVVEMDGTNVENILMLAE 553
                 6777889999999999999999999999999999997 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 1.6
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 + +a +l+ ++ +  ++++l ++ +  Pdd+ ++ll++
  CCD23565.1 892 YIYAVLLYSSRGFVSSLQYLSWLEDEIPDDPMVNLLMG 929
                 556666666666677899999999999******99986 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       2.6   3.4e+03       2      14 ..     162     174 ..     161     176 .. 0.84
   2 ?    1.2   0.1      0.38   4.8e+02       4      24 ..     266     286 ..     264     299 .. 0.89
   3 ?   -0.0   0.0      0.92   1.2e+03      10      29 ..     467     487 ..     460     490 .. 0.77
   4 ?    2.3   0.0      0.17   2.1e+02       6      22 ..     483     499 ..     475     503 .. 0.85
   5 ?    5.0   0.1     0.023        30       5      31 ..     517     541 ..     517     578 .. 0.88
   6 ?    0.6   0.0      0.59   7.6e+02       4      26 ..     977     999 ..     976    1007 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.6
       TPR_7   2 LlnLarlysrlGd 14 
                 +  L+++y+ +G+
  CCD23565.1 162 YETLGEIYQLQGR 174
                 6679*****9997 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.38
       TPR_7   4 nLarlysrlGdyeeAielyeq 24 
                  La+ly++  + e+Ai+ly +
  CCD23565.1 266 ELAVLYVDYDRIEDAIDLYIK 286
                 69999*9999*********76 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.92
       TPR_7  10 srlGdyeeAielyeq.sLalt 29 
                   + d+ee ++ly + +Lalt
  CCD23565.1 467 LYDEDFEEIADLYFEvALALT 487
                 447899999999999555887 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.17
       TPR_7   6 arlysrlGdyeeAiely 22 
                 a +  ++ +y+eAi+++
  CCD23565.1 483 ALALTKMEKYQEAIDFF 499
                 77888999******998 PP

  == domain 5  score: 5.0 bits;  conditional E-value: 0.023
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkd 31 
                 L+r+y +  +y+ A ++ye   +++ d
  CCD23565.1 517 LGRCYKETEQYALAKDYYET--VVEMD 541
                 8******************9..55444 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.59
       TPR_7   4 nLarlysrlGdyeeAielyeqsL 26 
                 n++r+++  G  + Ai++y ++L
  CCD23565.1 977 NIGRAFHLIGLVSIAITYYDKVL 999
                 88888888888888*****9955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1038 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1353  (0.0754643); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 7183.49
//
Query:       CCD23566.1  [L=130]
Description: hypothetical protein NDAI_0B05330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-24   85.1   0.1    6.9e-24   84.8   0.1    1.1  1  DUF1687   Protein of unknown function (DUF1687)


Domain annotation for each model (and alignments):
>> DUF1687  Protein of unknown function (DUF1687)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.1   3.8e-28   6.9e-24       1     128 []       4     118 ..       4     118 .. 0.95

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 3.8e-28
     DUF1687   1 FrtlqkspdvitlFhnakspa..SnkllklLkkasakasekakedqereefelevtekfPTlDQlktilsyvgkskaksvlksafpelseilkkfkkde 97 
                 F++lqksp++i+lF+++ + +  ++++l++Lk +++++            f+le+ ++fPTlDQlk+ ++   ++  + ++++++p+l+ i+k ++ d+
  CCD23566.1   4 FKSLQKSPRTISLFCDNFELNksCSTILQFLKGETSNN------------FNLELVSTFPTLDQLKYTYK---IN--PIIMNTQIPNLHRIMKLESFDP 85 
                 9**************99876667999*******99996............******************99...77..88******************** PP

     DUF1687  98 eskkklkelvkedlFk..rplvVDWdngkiaad 128
                  ++++l+++++e+ ++   +l+VDW++++i++d
  CCD23566.1  86 VFGSNLQKCAREGRWNpkVSLWVDWERKCIGND 118
                 ****************999************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1016.46
//
Query:       CCD23567.1  [L=183]
Description: hypothetical protein NDAI_0B05340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-15   57.0   0.2    2.3e-15   56.0   0.2    1.5  1  LSM              LSM domain
  ------ inclusion threshold ------
      0.072   13.1   7.8      0.067   13.3   2.4    2.1  2  Peptidase_S49_N  Peptidase family S49 N-terminal
        3.1    8.6  11.3        4.6    8.0   0.2    2.2  2  U3_snoRNA_assoc  U3 snoRNA associated


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.2   3.9e-19   2.3e-15       5      66 ..      59     124 ..      56     125 .. 0.94

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 3.9e-19
                 HTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET....EEEEEEEEEEEGGGEEEEE CS
         LSM   5 klinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk....ekrklglvliRGnnivlis 66 
                 +++++k+ v l++gr l G+L+ fDq+ Nl+L+ ++e++  ++     +  lg ++iRG+n+v+++
  CCD23567.1  59 SSVDRKIFVLLRDGRLLFGVLRTFDQYANLILQHCVERIYLSEenkyAEQELGIFMIRGENVVMLG 124
                 6789***********************************9988889999999***********986 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.4   1.1e-05     0.067      59     123 ..       8      69 ..       1      74 [. 0.59
   2 ?    3.3   0.3     0.013        79      62      90 ..     138     166 ..     119     183 .] 0.53

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.1e-05
  Peptidase_S49_N  59 ealldeeelkaaekkekkeekeekkaekkkake.eeekkrvfvldFkGdikAsevesLreeitavL 123
                      +++ +     ++++++++++k+++k++kk++k+ +e ++ +++ +++   +A  v+s+ ++i  +L
       CCD23567.1   8 QEVKEP----QQQQQQQQQSKQQSKQSKKAHKKlSEGEADLYLDQYNFTTTAAIVSSVDRKIFVLL 69 
                      333333....44444555555555555555555566778888888888888888877777776655 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.013
  Peptidase_S49_N  62 ldeeelkaaekkekkeekeekkaekkkak 90 
                      +++ + k a+k +k+++ ++ k+e kk k
       CCD23567.1 138 MERISFKDASKIKKNNDEKKFKSETKKGK 166
                      33333444444444333333333322222 PP

>> U3_snoRNA_assoc  U3 snoRNA associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   6.2     0.021   1.2e+02      14      40 ..      10      36 ..       2      44 .. 0.35
   2 ?    8.0   0.2   0.00076       4.6      24      57 ..     138     172 ..     121     175 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.021
  U3_snoRNA_assoc 14 edeeeaeeekskhineepkkarkkkkk 40
                      +e++++++++++ ++++k+++k +kk
       CCD23567.1 10 VKEPQQQQQQQQQSKQQSKQSKKAHKK 36
                     222222222222212222222222222 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00076
  U3_snoRNA_assoc  24 skhin.eepkkarkkkkkekllelkekrpkdvkkG 57 
                       ++i+ ++++k +k + ++k++++++k++  ++ G
       CCD23567.1 138 MERISfKDASKIKKNNDEKKFKSETKKGKEYARFG 172
                      334447899999999********999999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3249  (0.181215); expected 358.6 (0.02)
Passed bias filter:                     1025  (0.0571699); expected 358.6 (0.02)
Passed Vit filter:                       126  (0.00702772); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 1531.70
//
Query:       CCD23568.1  [L=184]
Description: hypothetical protein NDAI_0B05350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1394.61
//
Query:       CCD23569.1  [L=1055]
Description: hypothetical protein NDAI_0B05360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.8e-160  534.7   1.4   6.3e-160  532.9   0.0    2.2  2  TrkH        Cation transport protein
  ------ inclusion threshold ------
       0.14   11.4   0.0       0.35   10.0   0.0    1.7  1  Zip         ZIP Zinc transporter
        5.9    6.6   5.6       0.42   10.3   0.2    1.8  2  Connexin    Connexin


Domain annotation for each model (and alignments):
>> TrkH  Cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.0     0.059   3.5e+02     185     222 ..      75     112 ..      43     147 .. 0.65
   2 !  532.9   0.0  1.1e-163  6.3e-160     108     501 ..     528     990 ..     435     991 .. 0.95

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.059
        TrkH 185 splwwaffhsmSafnnlGfsltp.nSlasfnknivillv 222
                 ++  + +f s+ a +++G+ +   n l+ +++ ivi+++
  CCD23569.1  75 QKYIDILFLSAGAATQGGLNTVNtNELVLYQQ-IVIYIA 112
                 23347788888889999998877799999999.776643 PP

  == domain 2  score: 532.9 bits;  conditional E-value: 1.1e-163
        TrkH 108 vvlaylsl.ptlgrgsaflylseaqkeelggkelrslselikilvvyyvgleilafvllvvliytakaysevvdstgvsplwwaffhsmSafnnlGfsl 205
                    +yls+ p lg +s  ++ls+aqkeelgg+e+r++++l+ ilv+yyvgl+++ +++++++i+++++y+++v+++g+ p wwaff++mS+f+nlG+sl
  CCD23569.1 528 RTSTYLSWePKLGPNSIIYGLSKAQKEELGGVEYRAIKLLCIILVIYYVGLHLIIAIMFLPWICLKNKYRQIVRNDGIAPAWWAFFTGMSSFCNLGLSL 626
                 4569*********************************************************************************************** PP

        TrkH 206 tpnSlasfnknivillvaiifiilGnigFpillrviiaikkkilrdlkqikeslsflldlprrcftLllasgfvwllllelavlnvtdnilfilldegs 304
                 tp+S++ f ++i++l+ +i+fii+Gn+gFp++lr+ii++++k +rdl+qikeslsflld+prrcftLl++  ++w+ll++l++ln +d +lfi+ld g 
  CCD23569.1 627 TPDSMNRFSRAIYPLITMIFFIIAGNTGFPVFLRAIIWVMFKLSRDLSQIKESLSFLLDHPRRCFTLLFPNDATWWLLMTLVGLNGVDLVLFIILDRGA 725
                 *************************************************************************************************** PP

        TrkH 305 lvvksipkgsrvlkalFqsvstrtaGFsvvdlsnlhpaikvllvlmmyigglpgStaggIrrtnvyeefslgky.eieqekepkav............. 389
                  ++k+++ g+rvl +lFq+v+trtaGFs  d+s lhp+i+v+++lmmy+++lp  +a+++rrtnvyee+slg+y ++   + ++ +             
  CCD23569.1 726 EILKEYSGGYRVLLGLFQAVTTRTAGFSALDISLLHPSIQVSYMLMMYVSVLP--LAISMRRTNVYEERSLGIYgKMPMSELNQ-Ieaegknadgqhsp 821
                 *****************************************************..*******************8888888877.5579********** PP

        TrkH 390 .......................................................skksidgkhlerqllvdlwslflvlliilileglklsdvqepdf 433
                                                                        s+ s +  hl+rql++d+w++fl+l+ii+i+e+ k++d   p  
  CCD23569.1 822 tleddndeeleededeeskslassnsstshaigkerresntskkkkkknkkeeddSSNSYIAIHLRRQLSFDMWFMFLGLFIICICESGKIQDPEMPAI 920
                 *************************************************************************************************** PP

        TrkH 434 sffdiLfevvSaygtvGLSlG.a.knaslsaqlttisklvlialmirGrlrglpvlldraillpsdklee 501
                 ++f iLfe+vSaygtvGLSlG + +++slsaq+t +sklv+i++++rGr+rglp++ldrai+lps++le+
  CCD23569.1 921 NVFSILFEIVSAYGTVGLSLGyPgTTTSLSAQFTALSKLVIIVMLVRGRNRGLPYALDRAIMLPSERLER 990
                 ******************************************************************9986 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   5.9e-05      0.35     106     193 ..     805     901 ..     768     957 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 5.9e-05
         Zip 106 hkektpkkasssssesaakksvsndkveeseekedhvaeadtdadske....elrngkqeksesekeqaseeedkeklaslkvr......aiilllgl 193
                  ++++ + ++++ ++s + +  +++++ee+e+ e+ ++ a ++ ++++    e r+++++k++++k++++e++++ ++ ++ +r       +++ lgl
  CCD23569.1 805 LNQIEAEGKNADGQHSPTLEDDNDEELEEDEDEES-KSLASSNSSTSHaigkERRESNTSKKKKKKNKKEEDDSSNSYIAIHLRrqlsfdMWFMFLGL 901
                 45555556666666666666666666666666544.23333333333200002222222333333333333333333333333344444444444444 PP

>> Connexin  Connexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   1.4         2   1.2e+04     108     114 ..     417     423 ..     388     458 .. 0.41
   2 ?   10.3   0.2     7e-05      0.42     107     176 ..     829     902 ..     766     909 .. 0.62

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 2
    Connexin 108 eeeekee 114
                 ++ee++e
  CCD23569.1 417 QREEMRE 423
                 1111111 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 7e-05
    Connexin 107 k...eeeekeeeekeeekkkkkekkkkkkkeeekekkkeegkrrirggllrtYv.lqlllrillEvaflvgqyl 176
                 +   e+e +e+++  ++++++++   k+++e++++kkk++++++ ++    +Y+ ++l  ++ ++++f+++  +
  CCD23569.1 829 EeleEDEDEESKSLASSNSSTSHAIGKERRESNTSKKKKKKNKKEEDDSSNSYIaIHLRRQLSFDMWFMFLGLF 902
                 02212222222222222222233333333333444444444444477777787725777778899999987554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1055 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1886  (0.105193); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.47
# Mc/sec: 6711.46
//
Query:       CCD23570.1  [L=444]
Description: hypothetical protein NDAI_0B05370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-71  241.1  13.8    1.8e-71  240.8  13.8    1.1  1  Solute_trans_a  Organic solute transporter Ostalpha


Domain annotation for each model (and alignments):
>> Solute_trans_a  Organic solute transporter Ostalpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.8  13.8   9.9e-76   1.8e-71       3     265 .]      14     271 ..      12     271 .. 0.91

  Alignments for each domain:
  == domain 1  score: 240.8 bits;  conditional E-value: 9.9e-76
  Solute_trans_a   3 iiagvfallallislililqhlrhytkpseQrkiirIllmvpiyavsSllsllfpsaavyl.elvrdcYeafviysFfsllleylggeealikal 96 
                      ++ + ++la+lis  +i++++ +y++pseQr  irI l+vpi+++++l++ l p  a+ l +++r++Yeafviy+Ffsll+ +lgge+++i+++
      CCD23570.1  14 NLCYIATVLAILISANSICRQFLNYRRPSEQRLNIRIQLLVPIFSLTCLIATLRPILAQLLlDPIREIYEAFVIYTFFSLLILILGGERRIITEI 108
                     58999**************************************************8777767*******************************99 PP

  Solute_trans_a  97 erd...ek.kk.llplnlclekvklt.lkflkrcklgvlQyvvvkpllaivslileslgvycesfspkfaylyltiiynvsvtlAlyalllfyka 185
                       +   ++  + +  l +++++++l+ +  ++++k+g+lQyv++kpl++i+ ++ e+       +s+k   + l iiynvsvtl+ly+l+lf+++
      CCD23570.1 109 CINdnhPPiRHpIPILGHFFPTIDLSdPSDFLLVKRGILQYVWFKPLYCICVILSEA-------LSMKKSQFGLLIIYNVSVTLSLYSLALFWRC 196
                     8875433343334344499******9999***************************9.......6667778************************ PP

  Solute_trans_a 186 lkkeLkpfkpvlKflciklvvfltfwQglvlsilvkvgviketkklsaediaagiqnllicvEMvlfailhlyaFpykeY 265
                     l++eLkp++p+ Kflc+kl++f+++wQ+++++ ++ +g +++      + + + +qn l+c+EMv fai+h++aFp++ Y
      CCD23570.1 197 LYQELKPHNPWSKFLCVKLIIFASYWQNMIIQTIAILGKLEN-----DSIAPYLYQNGLLCIEMVGFAIFHSVAFPWQVY 271
                     **********************************99995554.....566678899*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3370.66
//
Query:       CCD23571.1  [L=303]
Description: hypothetical protein NDAI_0B05380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-61  203.9   1.2    5.1e-21   74.4   0.0    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0   2.8e-25   5.1e-21       4      95 ..      22     110 ..      19     112 .. 0.95
   2 !   61.5   0.1   3.1e-21   5.6e-17       3      94 ..     117     201 ..     115     204 .. 0.94
   3 !   66.0   0.0   1.2e-22   2.1e-18       3      94 ..     206     301 ..     204     303 .] 0.90

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 2.8e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +++++llaG++ag+++++v++P+d +Ktr+q+ + + ++s+   il+ l+ki   eG ++l++G+   +l+  pa+a++f++ye+ k +l +
  CCD23571.1  22 PLTHQLLAGAFAGIMEHSVMFPIDALKTRIQSTSLKPTSSN---ILSQLSKISSAEGSLALWKGVQSVILGAGPAHAVYFATYEYAKSHLID 110
                 67899*******************************99987...*******************************************99976 PP

  == domain 2  score: 61.5 bits;  conditional E-value: 3.1e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                  ++lk+ l+G +a ++a  +++P+d++K r+q++ +s+       +++v k+iyk+eG++++y  +  +l +++p +a +f++ye+  ++++
  CCD23571.1 117 HQPLKTALSGTCATIAADALMNPFDTIKQRMQLNTNST-------VWNVSKQIYKNEGFSAFYYSYPTTLAMNIPFAAFNFMIYESASKFFN 201
                 578999***************************99885.......99*****************************************9997 PP

  == domain 3  score: 66.0 bits;  conditional E-value: 1.2e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +++l ++l+Ggl+ga+ + +ttPld vKt lq+ ++++ +    +    + ++ + i++ +G +g++rGl p+++ ++pa+a+ +++ye  k++l 
  CCD23571.1 206 YNPLIHCLCGGLSGATCAAITTPLDCVKTVLQVRGSETVSLDVMKqadtFKKAASAILEVHGWKGFWRGLKPRVIANMPATAISWTAYECAKHFLI 301
                 567889***************************9999777666555566888888999***********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2273.83
//
Query:       CCD23572.1  [L=4076]
Description: hypothetical protein NDAI_0B05390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-99  331.1   0.2    2.8e-97  325.6   0.0    3.6  3  AAA_6         Hydrolytic ATP binding site of dynein motor reg
    1.6e-80  271.2   8.3    1.6e-80  271.2   8.3    5.9  6  DHC_N2        Dynein heavy chain, N-terminal region 2
    7.1e-51  173.5  18.6    7.1e-51  173.5  18.6    4.4  3  DHC_N1        Dynein heavy chain, N-terminal region 1
    2.1e-46  157.8   2.1    2.1e-46  157.8   2.1    5.8  6  AAA_9         ATP-binding dynein motor region
      1e-42  146.3   0.9    4.4e-42  144.2   0.3    2.5  2  AAA_8         P-loop containing dynein motor region D4
    2.6e-33  115.1   0.2    5.5e-29  100.9   0.0    4.0  3  AAA_7         P-loop containing dynein motor region
    1.2e-22   80.3   0.2    1.1e-08   35.1   0.0    5.1  3  AAA_5         AAA domain (dynein-related subfamily)
      2e-21   76.4   3.4    4.5e-21   75.3   3.4    1.5  1  MT            Microtubule-binding stalk of dynein motor
    3.4e-17   62.7   0.5      2e-16   60.3   0.1    2.4  2  AAA_lid_11    Dynein heavy chain AAA lid domain
    1.8e-16   60.3   0.9    3.9e-14   52.8   0.0    3.9  3  Dynein_heavy  Dynein heavy chain region D6 P-loop domain
      2e-12   47.6   3.4    9.7e-05   22.7   0.0    6.6  5  AAA_22        AAA domain
    2.9e-10   40.7   0.0     0.0064   16.9   0.0    4.5  3  AAA           ATPase family associated with various cellular 
    7.2e-09   36.2   0.1       0.03   14.7   0.0    5.0  3  AAA_16        AAA ATPase domain
    8.3e-06   26.4   0.5       0.78   10.3   0.0    4.7  3  AAA_18        AAA domain
      3e-05   24.2   0.1       0.21   11.8   0.0    4.6  4  AAA_33        AAA domain
    3.2e-05   24.1   0.0     0.0002   21.5   0.0    2.5  1  AAA_lid_1     AAA+ lid domain
    7.3e-05   22.6   0.3        6.3    6.5   0.0    4.2  4  AAA_30        AAA domain
    0.00011   21.9   0.4       0.58    9.9   0.0    4.2  3  IstB_IS21     IstB-like ATP binding protein
    0.00017   21.9   0.1        4.8    7.6   0.0    4.2  3  RNA_helicase  RNA helicase
    0.00048   20.5   1.9          2    8.7   0.0    4.4  4  AAA_19        AAA domain
     0.0006   19.6   2.4        2.5    7.8   0.1    3.7  3  AAA_24        AAA domain
     0.0007   19.5   0.4       0.37   10.7   0.0    3.6  2  RsgA_GTPase   RsgA GTPase
     0.0012   17.9   0.3       0.19   10.8   0.0    3.1  3  T2SSE         Type II/IV secretion system protein
  ------ inclusion threshold ------
       0.01   15.9   0.9         11    6.1   0.0    3.7  3  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
      0.021   14.2   0.2        1.3    8.3   0.0    3.2  3  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.026   13.8   0.0        2.1    7.6   0.0    3.1  3  Zeta_toxin    Zeta toxin
      0.032   13.8   0.0       0.61    9.6   0.0    2.5  2  AAA_25        AAA domain
      0.058   13.1   0.5        2.9    7.7   0.0    3.2  2  AAA_29        P-loop containing region of AAA domain
      0.068   12.5   0.2       0.74    9.1   0.0    2.6  2  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.073   13.0   3.2        7.9    6.4   0.1    3.7  2  NACHT         NACHT domain
      0.074   13.3   1.1         47    4.2   0.0    4.0  3  AAA_28        AAA domain
       0.09   13.3   8.4       0.95   10.0   0.1    4.5  3  ABC_tran      ABC transporter
       0.12   11.9   1.0       0.48   10.0   0.1    2.5  2  cobW          CobW/HypB/UreG, nucleotide-binding domain
        1.7    8.8   6.3       0.67   10.0   2.3    2.6  1  DUF1192       Protein of unknown function (DUF1192)


Domain annotation for each model (and alignments):
>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.6   0.0  5.2e-100   2.8e-97       1     327 []    1735    2060 ..    1735    2060 .. 0.99
   2 ?    0.5   0.0      0.45   2.4e+02     287     327 .]    2361    2401 ..    2344    2410 .. 0.84
   3 ?   -3.2   0.0       5.8     3e+03     185     269 ..    2565    2655 ..    2563    2700 .. 0.63

  Alignments for each domain:
  == domain 1  score: 325.6 bits;  conditional E-value: 5.2e-100
       AAA_6    1 YgyeYlgnserLviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnrie 97  
                  Yg+eY+g+ erL+ Tpl   ++ +lt++++  +gg   GpagtGKtE+vk L+++l+k+v+vfnc+d+ d++s++++++G++q GaWgCfdeFnr++
  CCD23572.1 1735 YGFEYIGVPERLIYTPLLMNAFSALTNSFQQGYGGHFFGPAGTGKTESVKALGQNLGKTVIVFNCDDTYDFQSMSRLLTGISQIGAWGCFDEFNRLD 1831
                  9************************************************************************************************ PP

       AAA_6   98 levLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnpgyagrteLPdnLkalfRpvammvPdlelIaeimLfseGfkeakelakklvt 194 
                   +vLS+++qqi +iq+ l +k +++v+ g+   l+++++i+it+n +y+gr++LP+nL+++f + ++  +d+++I++ +L   Gf+++  la klvt
  CCD23572.1 1832 EKVLSAISQQIAMIQKGLLNKDENIVLMGNVEFLHPQTAIVITLNNEYEGRSQLPENLRKIFHEFSIKKADTKIIVDAILSIFGFTNSLVLADKLVT 1928
                  ************************************************************************************************* PP

       AAA_6  195 lykllseqlskqdhydfglralksvlkaagelkreepeeseeelllralrdvnlpklvaeDvplfkglisdlFpgvelpesdyeeleeaieevlkek 291 
                  l++ l++++s q+hydfglr++k +lk + +l   +p+   e+l++++++++ lp l ++D  +f + ++++F +   +  d+e++ +++++v++e+
  CCD23572.1 1929 LFETLKKECSPQKHYDFGLRSIKKILKKCAQLLNLQPDIGHEQLIIESIHRILLPSLSKDDERIFITHLHEFFGDFP-TLDDSEQFLQHLRNVCSEN 2024
                  ***************************************************************************84.5578899************ PP

       AAA_6  292 klqleekfvekviqlyetlkvrhgvmlvGetgsgKt 327 
                  ++  ++++ +k++qly+ ++ + +++l+G++g gK+
  CCD23572.1 2025 GMFFTDELAKKCLQLYNFQMSQDAIILLGDAGIGKS 2060
                  ***********************************7 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.45
       AAA_6  287 vlkekklqleekfvekviqlyetlkvrhgvmlvGetgsgKt 327 
                  v+  + + ++ +++++ i+ +e+l+ +++++l G++gsgKt
  CCD23572.1 2361 VMLPDVIIPTAEILSQEIRYTELLEANKAIILCGPPGSGKT 2401
                  5555566778888899999999999999**********998 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 5.8
       AAA_6  185 akelakklvtlykllseqlskqd..hydfglralksvlkaagelkreepees....eeelllralrdvnlpklvaeDvplfkglisdlFpg 269 
                  a++l++  v+ly+ +++ +++ +  hy f+ r l+ +++   +   e p+++     ++ +++a r +      +eD+ lf++ ++ l ++
  CCD23572.1 2565 AEDLSNCSVSLYNATKKSFTQSNypHYVFSPRELTRLVRGFFNSLAEGPQQNlislLKVWIYEAWRVFADRLTSKEDLALFQSNVTRLLEE 2655
                  5788899999999999998654333999999999998887777766666655211123334444444444444467888887655555433 PP

>> DHC_N2  Dynein heavy chain, N-terminal region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   4.5       1.3     7e+02      55     227 ..     185     381 ..     126     453 .. 0.60
   2 ?   -2.5   1.1       3.9   2.1e+03      48      68 ..    1059    1079 ..     919    1185 .. 0.57
   3 !  271.2   8.3     3e-83   1.6e-80       4     397 .]    1200    1602 ..    1198    1602 .. 0.95
   4 ?   -0.5   0.6      0.99   5.2e+02      28     120 ..    1632    1730 ..    1606    1740 .. 0.67
   5 ?   -3.7   0.1       9.1   4.8e+03     233     263 ..    2207    2239 ..    2205    2247 .. 0.81
   6 ?   -1.5   1.5       1.9     1e+03     245     300 ..    3515    3576 ..    3501    3594 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.3
                 XXX.XXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXX..XXXXXXXXXXXX....XXXXXXXX.XXXXXXXXXXX.X.XXX.............. CS
      DHC_N2  55 lpk.alkewevakelkekie....efkevlplieelrnpal..rerHwkelsellgv..ikdpdseesltlgdllelgl.l.eee.............. 128
                 l++ +l +++ ++el++k++    e++ ++++  +++n +l  + + w+ +++ l     +  +++  +tl+ ll ++  + +++              
  CCD23572.1 185 LEQsRLDDFSFLNELQSKVNkwhkEISAFISITPNVKNISLnsELQLWSHMEASLSDllTQLGTPDIMITLQILLHAKRvHlIDDailltpvseklkll 283
                 332245556666666666552222333344444555566664334567777777654432324444557777777776653444457777777777777 PP

                 ...XXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS.TEEE..THHHHHHHHHH.HHHHHHTCSSSTT..THHHHHHHHHHHHHHHHHHHHHHH CS
      DHC_N2 129 ...ieeisekAtkEaslekalkkieeewkelefelteykdsgvfilkgvdeiielledh.ivklqsmksspyvkpfeeeveewekklsrlqeildewlk 223
                    i+ +++  ++ ++  +++++i++  +++++++++ + ++  i +++  +i+ ++++ i+kl  + s  +     +  ++++k ++ +++il++w +
  CCD23572.1 284 rdyIKFLTSFPKEFFDNSNTFEQIDTVVEDIHLTFHKLRYTKYPIERSL-LLIQDISNQlIIKLLELISGAF----NAPYTSFKKYMNSTSTILEKWDE 377
                 7767777777777788889999999999999999999887764444444.3444443330455555555544....45677788888888888888877 PP

                 HHHH CS
      DHC_N2 224 vQrk 227
                 v + 
  CCD23572.1 378 VLQD 381
                 7443 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.9
                  XXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2   48 llkklkklpkalkewevakel 68  
                   +++ ++++++++ ++ +++l
  CCD23572.1 1059 AKTDKTSIEETVQLYQSINQL 1079
                  222222222222222222222 PP

  == domain 3  score: 271.2 bits;  conditional E-value: 3e-83
                  XXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DHC_N2    4 ikkelellkklwdlvsewqekleewkktpfkeldveeleeevkellkklkklpkalkewevakelkekieefkevlplieelrnpalrerHwkelse 100 
                  i +el+ +++ w ++++ ++k+e+ +++++ ++d++++   ++++  +  +l+ +++++ +++++++ i+++++  +++  l+  al++rHwk +++
  CCD23572.1 1200 ILDELTRYENAWLSIDDLWRKVETLMEQKWIDTDINHTILIARKISVHTAELSPNVTHFLAYQKINDHIKNLLKAHKILILLKDAALKPRHWKSIFQ 1296
                  66899*****************************************9999*********************************************** PP

                  XX....X..XXXXXXX.XXXXXXXXXXX..XXXXXXXXXXXXXX-HHHHHHHHHHHHHHTS---EEEE-SSS.TEEE..THHHHHHHHHHHHHHHHT CS
      DHC_N2  101 llgv..i..kdpdseesltlgdllelgl..leeeieeisekAtkEaslekalkkieeewkelefelteykdsgvfilkgvdeiielledhivklqsm 191 
                  llg   i      +e +++l++l+e  l  +e+++++i+e+A+kE+++ek+l++i+++w+++++++++    g++i++++d ++ ++  ++ +l++m
  CCD23572.1 1297 LLGGnsIkgS-VLEEGTFSLRKLIEGTLflYESDVNNIIEQAQKEYTVEKSLDRIKRFWETAQYTFSANMV-GIRIVQEWDGLQDACITDLDELSAM 1391
                  **98752653.444557***********766***********************************99754.49*********************** PP

                  CSSSTT..THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.T.HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSGGGG...STTHHHHHHHH CS
      DHC_N2  192 ksspyvkpfeeeveewekklsrlqeildewlkvQrkWlyLepifss.edirkqlpeeakrFksvdkewkkimkevskdpnvleatskpgllekleel 287 
                  k+s+y++ fe++  ++e+kl++++ + + w+++Q  Wl L +i  + e+++k lp e+++F++v++e+k+++ +v++ + +l++ ++p++l  l+++
  CCD23572.1 1392 KNSRYFNIFEQTSLDLEAKLTEFSLLQSSWIECQFYWLDLYGIIGKtEEMQKLLPLETTKFRNVTQEFKSFTARVASFTAALDTLHIPNVLTLLQNI 1488
                  ******88************************************99779**************************99999****99*********** PP

                  HHHHHHHHHHHHHHHHHHHHHSTTHHHH-HHHHHHHHHTTTTSGGGHHHHHHHHSSEEEESE.....EEEEEETTS-EEEEE.......E.EEEHHH CS
      DHC_N2  288 neqlekiqksLneyLekkRlafpRFyFlsddeLleilsqskdpsavqphlkkcFegiaslefeekkeitgmiskegEkvelse.....argnveeWL 379 
                   ++l  i+ sLn++Lek+R+ fpRFyFl++++Ll++++   + + +++++ k++  i+++ ++  + i g++s+egE+++l+e      +++   WL
  CCD23572.1 1489 LDSLFLIKSSLNDFLEKQRKLFPRFYFLGNEDLLKLIGSNGNLHDISKYMVKMYATIDQVVVS-GNIISGVQSPEGEVLTLHEcvtvtPNSQTNIWL 1584
                  *************************************************************95.58999************9888887667888*** PP

                  HHHHHHHHHHHHHHHHHH CS
      DHC_N2  380 neleeemkktlkellkea 397 
                   +l++e+k tl   +k++
  CCD23572.1 1585 ENLDKEIKLTLAGDVKKC 1602
                  ***********9998887 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.99
                  X.....XXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXX..XXXXXXXX.XXXXX CS
      DHC_N2   28 wkktpfkeldveeleeevkellkklkklpkalke...wevakelkekieefkevlplieelrnpal...rerHwkelsellgvikdpdseesltlgd 118 
                  w+ +  ++  + e+e+ + e+++++ +l+ +l++       k+lk  + e k + ++++ l++++    ++  w ++++ + + +++d+ +s+t+++
  CCD23572.1 1632 WTYKLEADHATIEIEDLIVEIKEQVAQLSSELRSsceSLRKKKLKLLLIEAKLYSSILTTLKEKNGieeKQSIWMKMQRFFYHPEEKDPLKSITISQ 1728
                  5444444445667777788888888888888765433222333444466788888888888665544778899999999885534467777888888 PP

                  XX CS
      DHC_N2  119 ll 120 
                  l 
  CCD23572.1 1729 LT 1730
                  86 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 9.1
                  HHT.T..HHHHHHTHHHHHHHHHHHHHHHHHHH CS
      DHC_N2  233 pifss..edirkqlpeeakrFksvdkewkkimk 263 
                  +if s  ++  ++  +++++F++v+k + +i++
  CCD23572.1 2207 AIFDShsSKFLQKHGNDTNKFQDVTKIFDSIVT 2239
                  6888863368888889999*********99875 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 1.9
                  HHHHHHHHHHHHHHHHHHHHHHTTSGGGG...ST.....T..HHHHHHHHHHHHHHHHHHHHH CS
      DHC_N2  245 peeakrFksvdkewkkimkevskdpnvleatskp.....g..llekleelneqlekiqksLne 300 
                  ++++++  ++ +++k+++ke +++  ++++++++     +  l  +le+l+ +  +i k+L+e
  CCD23572.1 3515 KQQKEELTKIGRDYKNLLKENEHQ-LLVQLNNSEgnileNdvLVTTLESLKAKSTEISKKLEE 3576
                  566677788888888888866555.33333332222222123555566666666666666654 PP

>> DHC_N1  Dynein heavy chain, N-terminal region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.5  18.6   1.3e-53   7.1e-51       1     557 [.     196     739 ..     196     743 .. 0.88
   2 ?   -0.5   2.4      0.69   3.6e+02     204     344 ..     940    1093 ..     882    1150 .. 0.69
   3 ?    3.2   0.1      0.05        27     236     299 ..    3231    3293 ..    3133    3301 .. 0.71

  Alignments for each domain:
  == domain 1  score: 173.5 bits;  conditional E-value: 1.3e-53
      DHC_N1   1 vnaleslvieWikqIkevlkedsdgrkegplaEieFWrsreanLssieeqlkspevkkvlkvLkaakssyleafkaldtelkkaleeAkdnvkyLktLe 99 
                 +n+l+s v++W k+I++ ++ +++ ++ + ++E++ W  +ea+Ls + +ql +p++  +l++L +ak++ l     l t ++++l+  +d++k+L+++ 
  CCD23572.1 196 LNELQSKVNKWHKEISAFISITPNVKNISLNSELQLWSHMEASLSDLLTQLGTPDIMITLQILLHAKRVHLIDDAILLTPVSEKLKLLRDYIKFLTSFP 294
                 689*****************************************************************888888889*********************8 PP

      DHC_N1 100 kpledLestdleeikellpsllnairliwkiSryYntperivsLlekisnqlieqckkylnpeelfgqeveeaikklkeaielleawkeeyeektrekl 198
                 k + d +s+++e+i  +++++  +   +++++ +Y + er + L++ isnqli ++ + ++  + f+ + ++++k ++++ ++le+w+e + +++   l
  CCD23572.1 295 KEFFD-NSNTFEQIDTVVEDIHLTF-HKLRYT-KY-PIERSLLLIQDISNQLIIKLLELIS--GAFNAPYTSFKKYMNSTSTILEKWDEVL-QDCLLFL 386
                 88887.467***********99999.999***.9*.9************************..99977888********************.5999888 PP

      DHC_N1 199 eespkekpwef.deksiFarldafl.eRlekllelfetieqfsklekv.ggtkgkelegqieeileefeeaveklksksydvLd.vsaeefeadfkeFk 293
                 +es+++++  +   ks F+ + + + +  +++++l++++ ++   +kv +     +++   e   ++ ++++ +l+++  +    +  ++++a+ + ++
  CCD23572.1 387 RESKRKSSESViLPKS-FNYILSNIrKNTKDMRDLRKQHSKL---QKVlT-----RINY--EGYDTDLQQLYYPLTKVGLQ--KeTFLSDWNAAHSFYQ 472
                 8887444444424445.5555444435889999999999998...44432.....3443..556667778******66643..3244567********* PP

      DHC_N1 294 erikdlerrlqaiinqafedasslesalellrkfe.sllerpkikaaleekytdllqmykeeleavkklfekqkenpsaplakn..mPpvaGaiiwarq 389
                  r  +le++l++i++++++  +  e+ ++ l +f+  +   p+ik +++++++ l ++ k+e+  ++++    k  +   +a+   + p+  ai    q
  CCD23572.1 473 RRLIELEKKLINILKSTLAGKTASEEIIQELLRFKpLMDVNPRIKFQIKKYQQFLQNSIKKEIALLEDKHLLSKGIE--GVARIgeISPLGVAINNDYQ 569
                 ***********************************55589**************************99988877766..3333336************* PP

      DHC_N1 390 lerrieepmekfee.egegllkteegkkvkkkynelakkLkeyerklfeeWleeveekseeklkrpLLvredettk..llevNFdpellallrEvkylq 485
                 ++ rie+ ++++e  +g+++ +t++g  +++ky ++ k+L    +  +e+W +  +++ ++  + +++++ +e+++  +l+vNFd  ++++l++v+ylq
  CCD23572.1 570 IKVRIERIIKRMEYlLGKDWRDTSDGSFIFNKYLTMEKSLG--PEYRIENWIQGFPKQLSDIQDVSVIKILKEDKNsfQLQVNFDFTIVTILKDVRYLQ 666
                 *************879*************************..99999999999998777765555555544333345899****************** PP

      DHC_N1 486 rlgfevPesakniakqeeklrkyaesLellvreynrilesllpver..pLlaeelkeldaklepGltklnWnsl 557
                  +++++P ++ n++++++++ ++a ++ + ++++ ++l++l++     p++++ ++ + +++e ++t   W+sl
  CCD23572.1 667 YMDHDIPLHIINVTNSNKHICPHAIQILEQIQTFYSLLNELRTCKYtnPIFKKDIQLIWDLIEVAVT-TPWSSL 739
                 *****************************************8875466******************9.999986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.69
      DHC_N1  204 ekpwefdeksiFarldafle.Rlekllelfetieqfsklekvggtkgkelegq....ieeileefeeaveklksksydvLdvsaeefeadfkeFker 295 
                  e+ w+++e ++ + + + ++     l+++f   +qf++l+  + + g+ l+ q       i ++++   + l+++ +d+   +  +f + +k + ++
  CCD23572.1  940 ERMWDLNELAVTTLIGSDIKkSYSLLKDFFFSNQQFEQLQFKT-KIGNLLTFQnqtaYAYISAKYNYWQQFLRDILVDLYMRNVASFLTSIKTYYTK 1035
                  5666666666666665554425566778888888886666543.34455555533334444444555555555555555556666688888888888 PP

      DHC_N1  296 ikdle.........rrlqaiinqafedasslesalellrkfesllerpkikaaleeky 344 
                   +++          ++l + in+a  d +s+e+ ++l++++++ll+r +i++ ++  y
  CCD23572.1 1036 LERISghssslpdiTELVQTINSAKTDKTSIEETVQLYQSINQLLSRYRIRRPIDYIY 1093
                  8877633333333345667777777777799999999999999999999998887655 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.05
      DHC_N1  236 eqfsklekvggtkgkelegqieeileefeeaveklksksy..dvLdvsaeefeadfkeFkerikdl 299 
                  +  +++ek++ ++ + l + +e i+ +++ +  +l++ ++  + L  ++e++++++ke+++r+++l
  CCD23572.1 3231 K--ESIEKSK-NNYSGLIRDVEAIKGQIKVVHHNLERSKIlvNNLTSEKERWDRNIKEYHSRTDNL 3293
                  2..2355555.4555566668889888888888888887611566677777***********9987 PP

>> AAA_9  ATP-binding dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       2.6   1.4e+03     177     212 ..     470     505 ..     462     509 .. 0.81
   2 ?   -3.4   0.1       8.2   4.3e+03     103     134 ..     639     670 ..     613     694 .. 0.71
   3 ?   -1.0   0.8       1.5   7.9e+02     152     196 ..    1103    1147 ..    1100    1161 .. 0.83
   4 ?   -1.1   0.1       1.6   8.6e+02      30      74 ..    1573    1613 ..    1566    1656 .. 0.71
   5 !  157.8   2.1   4.1e-49   2.1e-46       6     220 .]    3355    3570 ..    3351    3570 .. 0.96
   6 ?   -2.6   0.0       4.5   2.4e+03      45      89 ..    3778    3825 ..    3749    3847 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHHHHHHHHHSSSSSSTHHHHHHHHHH CS
       AAA_9 177 enkkqlkeledklLeeLseaegniLedeelietLek 212
                  ++++l ele+kl++ L+++       ee+i++L +
  CCD23572.1 470 FYQRRLIELEKKLINILKSTLAGKTASEEIIQELLR 505
                 57999************9997667777888888765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.2
                 ESSSE.EE--SSCEEEEEESSTTSHHHHHHHH CS
       AAA_9 103 klgdkeieysenFrLylttklsnphyspeiaa 134
                 k  ++  +++ nF + ++t l+ ++y + +  
  CCD23572.1 639 KEDKNSFQLQVNFDFTIVTILKDVRYLQYMDH 670
                 22446778888999999999999988876654 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.5
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS CS
       AAA_9  152 lLaevvkkerpeleekkeeliqeeaenkkqlkeledklLeeLsea 196 
                  +L+e+ +++++ l+e+++e+ +  ++  ++lke  +++Le  ++ 
  CCD23572.1 1103 MLNELASRKERLLQERRTEISSLLQRESQSLKEYCQSMLEDWENK 1147
                  788888899999999999999999999999999999999877665 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.6
                  EESSSTTHHHHHHH......HEESTTSTTHHHHHHHHHHTTSEEE CS
       AAA_9   30 liDPqgqankwiknkekeklkviklsdkkflktLenairfGkpll 74  
                   + P++q n w++n  ++++k++ + d   +k+  + +r G+++l
  CCD23572.1 1573 TVTPNSQTNIWLENL-DKEIKLTLAGD---VKKCLSKVRSGEMFL 1613
                  67899*********7.55577666666...666666677777665 PP

  == domain 5  score: 157.8 bits;  conditional E-value: 4.1e-49
                  HT--STHHHHHHHHHHH...SSEEEEESSSTTHHHHHHH......HEESTTSTTHHHHHHHHHHTTSEEEESTT.SSHHSTTHHHHTTCCEE...CE CS
       AAA_9    6 qgLPsDelsieNaiivtks.erwPlliDPqgqankwiknkekeklkviklsdkkflktLenairfGkplliedvgeeldpiLepvLekeiikkg.rk 100 
                  +gLP++e+ +e   ++ +s  ++  +iDP+ q+ + + +    ++  i++ ++ f+k Lenai+fG ++li+++ e +dpi++++++ ++ k g r+
  CCD23572.1 3355 DGLPDEEFLLEKMELAVHSeGKVLYIIDPSCQISDILGKFYGVRYVQISFLENGFVKRLENAIKFGGVVLIHNA-EFYDPIISKLITGQFKKVGtRQ 3450
                  79**********9988876599999**************98888888899999*********************.****************9766** PP

                  EEESSSE.EE--SSCEEEEEESSTTSHHHHHHHHHSEEEE---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS CS
       AAA_9  101 liklgdkeieysenFrLylttklsnphyspeiaakvtlinFtvteeGLedqlLaevvkkerpeleekkeeliqeeaenkkqlkeledklLeeLseae 197 
                  +++lg +ei++s++F+L+l ++ sn +++  +++++ +inF++ +e++e q + +++++e p+++++keel++   ++k+ lke e++lL +L+++e
  CCD23572.1 3451 IVQLGTNEIDVSPDFKLFLYSHASNLNIPTVLKTRTRIINFSIAKESIELQAVRIALTNEAPDVKQQKEELTKIGRDYKNLLKENEHQLLVQLNNSE 3547
                  ************************************************************************************************* PP

                  SSSSTHHHHHHHHHHHHHHHHHH CS
       AAA_9  198 gniLedeelietLeksKktaeei 220 
                  gniLe++ l++tLe+ K++++ei
  CCD23572.1 3548 GNILENDVLVTTLESLKAKSTEI 3570
                  ********************998 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 4.5
                  .....HEESTTSTTHHHHHHHHH....HTTSEEEESTT.SSHHSTTHHH CS
       AAA_9   45 ekeklkviklsdkkflktLenai....rfGkplliedvgeeldpiLepv 89  
                  ++++l+vi l +++  k+ e++i    + G  ll+++++ +ld +  +v
  CCD23572.1 3778 SERNLTVIPLGSSENSKYAEEEIsrlqNQGGWLLLQNLQMSLDWV-RSV 3825
                  34458888887555555555555222257999******9999743.333 PP

>> AAA_8  P-loop containing dynein motor region D4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.3   8.3e-45   4.4e-42       1     207 [.    2706    2915 ..    2706    2940 .. 0.91
   2 ?   -3.5   0.0       9.7   5.1e+03     173     205 ..    3600    3632 ..    3596    3667 .. 0.68

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 8.3e-45
       AAA_8    1 ldLvlfedaiehlarilRvlrqprghaLlvGvgGsGrqsltkLAafiaelelfqievtkkykekefredlkkllkkagikqkevvfllsdnqiiees 97  
                  + +v+++++++hl+ri Rv +q +gh++l+G +  G++ +t+  a ++++ + + ++++ y+ ++f++ l+ +l+k+ +++++v++++++++i+e++
  CCD23572.1 2706 MPIVIYDEMLDHLLRIDRVFKQVQGHTMLIGAECIGKKIMTNFVAWLNGIIVLEPNIHRRYTLSDFDDFLRMVLTKCTLEERRVCLIIDESNILETA 2802
                  789********************************************************************************************** PP

       AAA_8   98 fledinnlLntGevpnLfskeekeeiieelrkeakkq.gvedskesllnffikrvrenLhivlcms.pvgeafrsrlrkfpsLvncttidwfqeWPe 192 
                  fle +n+lL++ ++p+Lf+ +++e++i++l++++k+     d++++l+n f++++ +nLh+v+++s p+g +   ++ + p+L n ++++w+ +W +
  CCD23572.1 2803 FLERMNTLLANADIPDLFQGQDYENLISKLQSKIKSMgLLLDTEQELYNWFTHEIARNLHVVFTISePTGTN-PFKMVSSPALFNRCVVNWMGTWST 2898
                  **********************************999456789*********************98455555.5566677***************** PP

       AAA_8  193 eaLleVaekvlee..ee 207 
                  +++l+Va++++++  + 
  CCD23572.1 2899 KTMLQVANSLVTDipRD 2915
                  **********9984433 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9.7
       AAA_8  173 rkfpsLvncttidwfqeWPeeaLleVaekvlee 205 
                    +  L + +ti+wf +   + +le  +++++ 
  CCD23572.1 3600 IVYSVLQKLSTIHWFYQFSIQQFLECVRSIFNG 3632
                  568889999999999999999999999888876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.021        11      30      63 ..    1763    1795 ..    1745    1813 .. 0.79
   2 ?    3.6   0.0     0.081        43      31      58 ..    2044    2071 ..    2028    2090 .. 0.81
   3 !  100.9   0.0     1e-31   5.5e-29       8     179 ..    2362    2536 ..    2358    2538 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.021
       AAA_7   30 lknkkpvllvGptGtGKtviikdllkkldkekyl 63  
                  +++++   + Gp+GtGKt  +k l ++l k+ ++
  CCD23572.1 1763 FQQGYGGHFFGPAGTGKTESVKALGQNLGKT-VI 1795
                  5667777899**************9999943.33 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.081
       AAA_7   31 knkkpvllvGptGtGKtviikdllkkld 58  
                   ++  ++l G++G GK++i++ +l++++
  CCD23572.1 2044 MSQDAIILLGDAGIGKSTILRLTLSSIS 2071
                  5677899************999888766 PP

  == domain 3  score: 100.9 bits;  conditional E-value: 1e-31
       AAA_7    8 kfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrk...gvygPpgg.k 100 
                   + ++++pt + +++++  + ll+++k ++l+Gp G+GKt++++++l k +  k++ + +nfs+ t+ +++ +++ ++ e rr    +++ P+ g +
  CCD23572.1 2362 MLPDVIIPTAEILSQEIRYTELLEANKAIILCGPPGSGKTMTLNNMLLKSP--KFKLVGMNFSKDTKISNVLRTLSRHTEYRRNangSTLSPKDGtQ 2456
                  56789****************************************998888..9**************************99864447899996626 PP

       AAA_7  101 klvvFvDDlnmpakekygaqppiellRqlldyggwYdrkklefkeikdvqlvaamgppg.ggrneitpRllrhfnvlait 179 
                  +lv+F D++n+ +++ y++q  + +lRql++++g++ + + ++ +++ +++v+a++pp+  gr ++ p ++rh +v+ ++
  CCD23572.1 2457 TLVFFCDEINLTKPDAYNSQIVVLFLRQLIEKNGFWRTPENQWVTLERIIFVGACNPPSdVGRIPLAPTFIRHTCVVFVD 2536
                  68999*********************************999****************97359*************98775 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.1    0.0022       1.1       6     138 .]    1773    1893 ..    1771    1893 .. 0.80
   2 !   35.1   0.0   2.1e-11   1.1e-08       2     124 ..    2049    2179 ..    2048    2189 .. 0.91
   3 !   29.2   0.0   1.5e-09   7.9e-07       2     130 ..    2390    2522 ..    2389    2529 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0022
                  --SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSE CS
       AAA_5    6 GppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggel 102 
                  Gp GtgK+e ++ l + l+++v + ++ + +  +  +++++            l+   + g+  ++DE++r++ +vl++  + +   +  l + +e 
  CCD23572.1 1773 GPAGTGKTESVKALGQNLGKTVIVFNCDDTY--D--FQSMS----------RLLTGISQIGAWGCFDEFNRLDEKVLSAISQQIAMIQKGLLNKDEN 1855
                  9999999999999999999998888888843..3..55555..........457778889*****************99999988888877777777 PP

                  EE---........-EEEEEESS--.-TT-TTHHHHTT- CS
       AAA_5  103 vkakndd.ller.frviatanpldrslnelspalrsRf 138 
                  +    +  +l + + ++ t n+ + ++++l ++lr++f
  CCD23572.1 1856 IVLMGNVeFLHPqTAIVITLNNEYEGRSQLPENLRKIF 1893
                  776666666666688888888888899999****9988 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 2.1e-11
                  EEEE--SSSSHHHHHHHGGGGB.....S--EEEEE--TT--HHHHH--B--.........--------.............G-SEEEEESGGG--HH CS
       AAA_5    2 vlLvGppGtgKselaerlaaal.....nreveyvqltrdtteedlkgrreikngttslvdsplvraar.............egeilvlDEveraese 80  
                  ++L+G+ G+gKs++ +  ++ +     ++++ y   t+ +++e+l gr++  + t +++d+ ++  +r             + +i+++ +++   + 
  CCD23572.1 2049 IILLGDAGIGKSTILRLTLSSIsalsgKKNIIYTIDTKVLSKEELYGRMN--KATLEWTDGLFTSLIRdihndiigtfrnaHIWIVFDSDID---PT 2140
                  79**************99998889999999999999**************..9***********9999***********9999999999999...** PP

                  HHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS-- CS
       AAA_5   81 vlnsLlslleerrllleeggelvkaknddllerfrviatanpld 124 
                   +++L+s+l+++++l+ ++ge+ k +++     +++i+++  ++
  CCD23572.1 2141 YVETLNSVLDDNKILTLPNGERFKIPAN-----LHLIFETTGVH 2179
                  *************************998.....78888776655 PP

  == domain 3  score: 29.2 bits;  conditional E-value: 1.5e-09
                  EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------.....G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5    2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraar.....egeilvlDEveraesevlnsLlslleer 92  
                  ++L GppG+gK++    ++    + +++ +++++dt+ ++++  ++    +t+++ ++           +  +++ DE++  ++++ ns + +l  r
  CCD23572.1 2390 IILCGPPGSGKTMTLNNMLLKSpKFKLVGMNFSKDTKISNVLRTLSR---HTEYRRNANGSTLSpkdgtQTLVFFCDEINLTKPDAYNSQIVVLFLR 2483
                  79************999998889********************9994...4444433333333355566999************************* PP

                  EEE..-SSSEEE---.......-EEEEEESS--..-TT-T CS
       AAA_5   93 rllleeggelvkakndd.llerfrviatanpld.rslnel 130 
                  +l   +g++++ +++    ler+ +++++np++  ++ +l
  CCD23572.1 2484 QLIEKNGFWRTPENQ-WvTLERIIFVGACNPPSdVGRIPL 2522
                  ***999999998777.559999*********996555555 PP

>> MT  Microtubule-binding stalk of dynein motor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   3.4   8.5e-24   4.5e-21       5     333 ..    2992    3316 ..    2988    3324 .. 0.88

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 8.5e-24
          MT    5 ngllklqstaaqvddlkaklaaqevelkqknedadkliqvvgvetekvskekaiadeeekkvavinkevk..kkqkdceedlakaepallaaqealn 99  
                  ngl kl  +  +v++l   l++++ el+ k+++a k ++ +  e +   +++     ee k+ + ++ev+  +++    ++l   epa+l a+  ++
  CCD23572.1 2992 NGLEKLTESVVKVQNLEKELSVKKSELEVKEQEARKTLDNLLFEQNESERKQE--ATEEIKIILEEREVEiiNHRDLVIKELRLVEPAVLEARRGVQ 3086
                  9**************************************99999887655443..35667776666665521566668899**************** PP

          MT  100 tlnktnltelksfgsppdavvnvaaavmvllaprgkvpkdrswkaakivmakvdafldslinfdkenihenclkai..keylndpefepefiksksl 194 
                   ++k++lte++s+  pp  v  v  av v+l  +       +w+  +  ++k d f+  +i++d   +    ++ +   ++l+  +f  e i+  s 
  CCD23572.1 3087 NIKKQQLTEIRSMMHPPVGVKLVLEAVCVILGRT-----YSTWRNIQQYISK-DDFIRDIIQYDTISMMTPEMRVFvkANFLERSDFTFEAINRASK 3177
                  *****************************98543.....468*****99999.669999*****98876655555422579**************** PP

          MT  195 aaaglcswvinivrfyevycdvepkrqalekanaelaaaqeklaaikakiaelnanlaeltaafekatadklkcqqeaeatartislanrlvgglas 291 
                  a++ l  wv   v++ e+   +ep +q +   ++e  +a+ +l a  + ia+l++ + +   ++     d    + + ++  + +  ++ lv  l+s
  CCD23572.1 3178 ACGPLYQWVFAQVNYGEILERIEPLQQEVAIVEEETLKARARLLAAEEMIADLKESIEKSKNNYSGLIRDVEAIKGQIKVVHHNLERSKILVNNLTS 3274
                  ****************************************************************99998887777788999999************* PP

          MT  292 envrwaeavenfksqektlcgdvllitafvsyvgfftkkyrq 333 
                  e+ rw   +++++s+   l g  +l +    y g +    r+
  CCD23572.1 3275 EKERWDRNIKEYHSRTDNLIGTSILCAISSNYFGPLNEGQRN 3316
                  **********************99999999999987766665 PP

>> AAA_lid_11  Dynein heavy chain AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.9   2.1e+03      81     105 ..    1351    1375 ..    1328    1392 .. 0.79
   2 !   60.3   0.1   3.7e-19     2e-16      25     118 ..    3899    3992 ..    3863    4042 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.9
                  GS-HHHHHHHHHHTTTSTT--SHHH CS
  AAA_lid_11   81 evpwealkyligeinYGGrvtDdwD 105 
                  +  we+ +y+++  + G r++ +wD
  CCD23572.1 1351 KRFWETAQYTFSANMVGIRIVQEWD 1375
                  456*********************9 PP

  == domain 2  score: 60.3 bits;  conditional E-value: 3.7e-19
                  ..HHHHHHHHHHHHHHHHHGGGGTTTS-SS-----HHHHHHHHHHHHHHHHHCSSGGS-HHHHHHHHHHTTTSTT--SHHHHHHHHHHHHHHSS CS
  AAA_lid_11   25 eefkkllfsLcffHavvqeRrkFgplGwnipYeFnesdleisvevlkmyldeyeekevpwealkyligeinYGGrvtDdwDrrllktyleeffs 118 
                  +++ +  f L++fHa v  R +  p+G++ +Y+Fn++d+e +++ lk +++   ++++    l+y ig ++YGG+v    D ++l+t+++e+f 
  CCD23572.1 3899 TRYINYRFLLTLFHAFVSCRSNLAPVGFSKTYDFNNQDYESCLKYLKHLVTLDVSENTCRYLLQYHIGTVIYGGKVDQFTDLQILQTICNEIFY 3992
                  3488889******************************************8766667888889****************************9885 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       7.4   3.9e+03      62     102 ..    2668    2708 ..    2665    2715 .. 0.76
   2 ?    3.2   0.0      0.17        87      46     104 ..    3411    3482 ..    3398    3493 .. 0.72
   3 !   52.8   0.0   7.4e-17   3.9e-14       5     119 .]    3756    3877 ..    3752    3877 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 7.4
                    -GGG-CCCHH.HHHHH........HHTT-EEEEEEES-TTS-H CS
  Dynein_heavy   62 Nchlapswlk.eLekileel.eeklhssfRlwltsepspkfPi 102 
                    Nc l  +wl+ e +++ +e+  e ++++f+++   e++ ++Pi
    CCD23572.1 2668 NCLLFSDWLSiEYKEVSKEAlFEFVQQRFQIFS--EEEYDMPI 2708
                    9*******9989999977556788889999884..44445565 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.17
                    HHHHHHHHHT-EEEEE-GGG-CCCHHHHHHH...................HHTT-EEEEEEES-T.TS-HHH CS
  Dynein_heavy   46 kalekaakegsWvlLqNchlapswlkeLeki.leel...........eeklhssfRlwltsepsp.kfPisl 104 
                    k le+a+k g+ vl++N       +++L +  ++++           e +++++f+l+l s+ s+ ++P  l
    CCD23572.1 3411 KRLENAIKFGGVVLIHNAEFYDPIISKLITGqFKKVgtrqivqlgtnEIDVSPDFKLFLYSHASNlNIPTVL 3482
                    56899999999999999999877765554443222243445666766677889******9999994588744 PP

  == domain 3  score: 52.8 bits;  conditional E-value: 7.4e-17
                    -EEEEE-TT--THHHHHHHHHHTT--EEEEETTSH.HHHHHHHHHHHHHHHT-EEEEE-GGG-CCCHH.HHHHH...........HHTT-EEEEE CS
  Dynein_heavy    5 PvlfilspgadptesleklakklkklvksvslGqg.qeeeaekalekaakegsWvlLqNchlapswlk.eLekileel....eeklhssfRlwlt 93  
                    ++++  ++++d++  + ++a+  +++++ + lG+  +++ ae+ +++ +++g+W+lLqN +++++w++  L++i+e+     ++  +++ ++++t
    CCD23572.1 3756 GLIIGCEQNSDASFLVSDMADASERNLTVIPLGSSeNSKYAEEEISRLQNQGGWLLLQNLQMSLDWVRsVLTTIIEDNrvleDDPSKKEVKIFMT 3850
                    677778889999999*******99999*******956679**************************9988999999667888777889******* PP

                    EES-TT.S-HHHHHTSEEEEE---SSH CS
  Dynein_heavy   94 sepspk.fPislLqssikvtnepPkgl 119 
                    ++ + + +PislLq+s k +++  kgl
    CCD23572.1 3851 ADLHGQeLPISLLQHSYKTVYDDNKGL 3877
                    ****988*************9988775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       5.9   3.1e+03      52     115 ..    1048    1110 ..    1005    1126 .. 0.77
   2 !   10.6   0.0   0.00095       0.5      10      65 ..    1771    1817 ..    1764    1898 .. 0.75
   3 ?    6.2   0.0     0.023        12       4      29 ..    2045    2070 ..    2043    2115 .. 0.78
   4 !   22.7   0.0   1.8e-07   9.7e-05       6      71 ..    2388    2447 ..    2384    2467 .. 0.86
   5 ?    1.4   0.0      0.67   3.5e+02      56     120 ..    2748    2813 ..    2720    2830 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 5.9
      AAA_22   52 sskdllrellralglelkaerlsseellealeqalrarav...ielliiDEaqhlrseealeeLrsl 115 
                  + ++l + + +a +++++    ++ +l++ ++q l++++    i  + i+ ++     ++l+eL s+
  CCD23572.1 1048 DITELVQTINSAKTDKTSI--EETVQLYQSINQLLSRYRIrrpIDYIYIEQVEGD--VAMLNELASR 1110
                  5666777777777766666..8999999999999999999888888888888885..5788887554 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00095
      AAA_22   10 vtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralg 65  
                   +G++GtGKT +++ l ++l         +++v+ +++    + +++ r l  + +
  CCD23572.1 1771 FFGPAGTGKTESVKALGQNL---------GKTVIVFNCDDTYDFQSMSRLLTGISQ 1817
                  69******************.........999999999988866665555544444 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.023
      AAA_22    4 tagilvvtGesGtGKTtllrrlleql 29  
                  ++  +++ G +G+GK+t lr  l++ 
  CCD23572.1 2045 SQDAIILLGDAGIGKSTILRLTLSSI 2070
                  57789**************9887765 PP

  == domain 4  score: 22.7 bits;  conditional E-value: 1.8e-07
      AAA_22    6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka..e 71  
                  + ++++G++G+GKT++l+++l + +        + ++v ++ +++t+ +++lr l r ++ +++a  +
  CCD23572.1 2388 KAIILCGPPGSGKTMTLNNMLLKSP--------KFKLVGMNFSKDTKISNVLRTLSRHTEYRRNAngS 2447
                  789********************97........9********************99999888777442 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.67
      AAA_22   56 llrellralglelka.erlsseellealeqalrarav...ielliiDEaqhlrseealeeLrsllnlsr 120 
                  +  +l  ++ le +  +r +++++ + l+  l ++     +++liiDE   l + + le   +ll    
  CCD23572.1 2748 FVAWLNGIIVLEPNIhRRYTLSDFDDFLRMVLTKCTLeerRVCLIIDESNIL-ETAFLERMNTLLA--N 2813
                  555555555555555444444444444444444554466689********9*.7555555544444..3 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.8e-05    0.0096       3      99 ..    1771    1899 ..    1770    1932 .. 0.68
   2 ?    1.3   0.0      0.81   4.3e+02       1      23 [.    2049    2071 ..    2049    2138 .. 0.72
   3 !   16.9   0.0   1.2e-05    0.0064       1     114 [.    2390    2516 ..    2390    2522 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.8e-05
                  EESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS............................STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHH CS
         AAA    3 lyGppGtGKTllakavakelgvefleisgsellsk............................yvgesekkirelfkeakekakpsilfiDEidala 71  
                  ++Gp GtGKT  +ka+ ++lg +++ +++ +  +                             ++++ +++i+++ k + +k    i+++ +++ l+
  CCD23572.1 1771 FFGPAGTGKTESVKALGQNLGKTVIVFNCDDTYDFqsmsrlltgisqigawgcfdefnrldekVLSAISQQIAMIQKGLLNKD-ENIVLMGNVEFLH 1866
                  79***************************999833567888888888888887777665555444444444444444433332.4777777777777 PP

                  HHH.....TTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   72 ksr.....sgseseeeervvnqLlteldgvkkk 99  
                  ++       ++e e ++++ + L + + +++ k
  CCD23572.1 1867 PQTaivitLNNEYEGRSQLPENLRKIFHEFSIK 1899
                  777555554455555555555555555555555 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.81
                  EEEESSTTSSHHHHHHHHHHHHT CS
         AAA    1 vllyGppGtGKTllakavakelg 23  
                  ++l G  G+GK+++ +   ++++
  CCD23572.1 2049 IILLGDAGIGKSTILRLTLSSIS 2071
                  5899************9999873 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 1.2e-05
                  EEEESSTTSSHHHHHHHHHHHH.THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA    1 vllyGppGtGKTllakavakel.gvefleisgsell.skyvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgseseeeervvnq 88  
                  ++l+GppG GKT++ + +  ++ +++++ ++ s+ +  + v  + ++  e+ ++a  +        ++ ++f DEi    ++        ++++v  
  CCD23572.1 2390 IILCGPPGSGKTMTLNNMLLKSpKFKLVGMNFSKDTkISNVLRTLSRHTEYRRNANGSTlspkdgtQTLVFFCDEINLTKPDA------YNSQIVVL 2480
                  689*********9988766554388888888888883223444444444444444333355667856699999***9998888......88899999 PP

                  HHHHHHHTTTS..........SSTEEEEEEESSGGG CS
         AAA   89 Llteldgvkkk..........eskvivigatnrpdk 114 
                  +l++l + +             +++i++ga+n p++
  CCD23572.1 2481 FLRQLIEKNGFwrtpenqwvtLERIIFVGACNPPSD 2516
                  9999998888899999999997779****9998765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0025       1.3      30      76 ..    1772    1815 ..    1754    1910 .. 0.68
   2 !   14.7   0.0   5.7e-05      0.03      25      88 ..    2047    2119 ..    2032    2137 .. 0.71
   3 ?    5.2   0.0     0.048        25      25      45 ..    2388    2408 ..    2379    2449 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0025
      AAA_16   30 sGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqal 76  
                   G++G+GK+  v++l + l k+   ++  +cd+     ++s l++ +
  CCD23572.1 1772 FGPAGTGKTESVKALGQNLGKT---VIVFNCDDTYDFQSMSRLLTGI 1815
                  6********************9...7777888773333333333333 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 5.7e-05
      AAA_16   25 elvllsGesGvGKsslvrellralekd....g.gif....lrgkcdql.esaipysalaqalareellrqllde 88  
                   +++l G++G+GKs+++r  l ++++     + +++    +  k + + +++ + + +++ l++ +l+r+++++
  CCD23572.1 2047 DAIILLGDAGIGKSTILRLTLSSISALsgkkNiIYTidtkVLSKEELYgRMNKATLEWTDGLFT-SLIRDIHND 2119
                  5799*****************9877666666323333333333333335666667778888855.888888877 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.048
      AAA_16   25 elvllsGesGvGKsslvrell 45  
                   +++l G++G+GK+  ++  l
  CCD23572.1 2388 KAIILCGPPGSGKTMTLNNML 2408
                  5799**********9995544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0015      0.78       4      82 ..    1772    1861 ..    1771    1880 .. 0.72
   2 ?    2.6   0.0      0.34   1.8e+02       1      41 [.    2049    2097 ..    2049    2137 .. 0.68
   3 ?    7.5   0.0      0.01       5.5       1      16 [.    2390    2405 ..    2390    2443 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0015
      AAA_18    4 tGtpGvGKttlakeLskrl.gf.....gvnlrdvakenglllevdpe....aldeskrldedkldklldaleenss.aleegknlvidgh 82  
                   G++G+GKt+  k+L + l +       +   d  + ++ll++  +      +de++rlde++l ++++++  + +  l + +n+v+ g 
  CCD23572.1 1772 FGPAGTGKTESVKALGQNLgKTvivfnCDDTYDFQSMSRLLTGISQIgawgCFDEFNRLDEKVLSAISQQIAMIQKgLLNKDENIVLMGN 1861
                  69*************7776344775453333333344444444444488999***************99999999898888888887665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.34
      AAA_18    1 IlltGtpGvGKttlakeLskrl.gf.......gvnlrdvakenglllev 41  
                  I+l G +G GK+t+ +   ++  ++        ++ ++v+++++l+   
  CCD23572.1 2049 IILLGDAGIGKSTILRLTLSSIsALsgkkniiYTIDTKVLSKEELYGRM 2097
                  99************99752222122333344555566666666655555 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.01
      AAA_18    1 IlltGtpGvGKttlak 16  
                  I+l+G+pG+GKt   +
  CCD23572.1 2390 IILCGPPGSGKTMTLN 2405
                  9**********96655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.067        35       4      29 ..    1771    1798 ..    1770    1866 .. 0.79
   2 ?    0.8   0.0      0.97   5.1e+02       2      75 ..    2049    2133 ..    2049    2137 .. 0.64
   3 !   11.8   0.0   0.00039      0.21       2      40 ..    2390    2433 ..    2390    2459 .. 0.69
   4 ?   -1.5   0.0       4.7   2.5e+03      24      79 ..    3544    3604 ..    3536    3619 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.067
      AAA_33    4 lvGlpGsGKstlaerllkklg..avlls 29  
                  + G++G+GK+  ++ l ++lg  +++ +
  CCD23572.1 1771 FFGPAGTGKTESVKALGQNLGktVIVFN 1798
                  78******************98544444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.97
      AAA_33    2 vllvGlpGsGKstlaerllkklg........avllssdtlrr.rlfgtdqqsktdytr..vldrlyqilnelarkalsagrnvil 75  
                  ++l G +G GKst ++  l             +++++ +l++  l+g+ ++ + ++t+  +++ +++i n+++   + a + +++
  CCD23572.1 2049 IILLGDAGIGKSTILRLTLSSISalsgkkniIYTIDTKVLSKeELYGRMNKATLEWTDglFTSLIRDIHNDIIGTFRNAHIWIVF 2133
                  678899*********9875444444466667777777777777777755555555565334444777777777666666655555 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00039
      AAA_33    2 vllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfgt 40  
                  ++l+G+pGsGK+  + ++l k +     +   s+dt ++++  t
  CCD23572.1 2390 IILCGPPGSGKTMTLNNMLLKSPkfklvGMNFSKDTKISNVLRT 2433
                  699*************9887777655544445555544444444 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 4.7
      AAA_33   24 g...avllssdtlrrrlfgtdqqsktdytrvldr..lyqilnelarkalsagrnvildatn 79  
                      + +l+ d+l ++l+  + +s++ +++++++  + + ln++++++   gr++ +    
  CCD23572.1 3544 NnseGNILENDVLVTTLESLKAKSTEISKKLEESehTMKKLNKFVEQYSLLGRHCFIVYSV 3604
                  334488999*********9888888877776555338889999999999999998876555 PP

>> AAA_lid_1  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.8e-07    0.0002      23      90 ..    2589    2657 ..    2570    2667 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.8e-07
   AAA_lid_1   23 fhyvfnlrdlsnifqgllfssaevlk.apldlirlylheservygdkmveekdlellekvtlevakkff 90  
                   hyvf  r+l+ + +g++ s ae  +   + l++++++e+ rv+ d++  ++dl l++   + ++   f
  CCD23572.1 2589 PHYVFSPRELTRLVRGFFNSLAEGPQqNLISLLKVWIYEAWRVFADRLTSKEDLALFQSNVTRLLEENF 2657
                  4*********************986515689*************************9976666655544 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.038        20      25      40 ..    1773    1788 ..    1762    1797 .. 0.85
   2 ?    5.3   0.0     0.027        14      16      50 ..    2045    2079 ..    2038    2093 .. 0.76
   3 ?    6.5   0.0     0.012       6.3      11      37 ..    2381    2406 ..    2375    2421 .. 0.82
   4 ?   -2.0   0.0       4.7   2.5e+03      86     114 ..    2784    2813 ..    2764    2820 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.038
      AAA_30   25 GpAGtGKttalkalre 40  
                  GpAGtGKt ++kal +
  CCD23572.1 1773 GPAGTGKTESVKALGQ 1788
                  9*********999854 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.027
      AAA_30   16 sgdrvavltGpAGtGKttalkalreaweaa.ggrvi 50  
                  s+d   +l G AG GK+t+l+     + a  g++ i
  CCD23572.1 2045 SQD-AIILLGDAGIGKSTILRLTLSSISALsGKKNI 2079
                  554.7899*************987777666565544 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.012
      AAA_30   11 ealltsgdrvavltGpAGtGKttalka 37  
                  ++ll+ ++   +l Gp+G+GKt++l+ 
  CCD23572.1 2381 TELLEANK-AIILCGPPGSGKTMTLNN 2406
                  55666664.899************986 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 4.7
      AAA_30   86 lepg.tllivDEagmvdtkqlaallkaaek 114 
                  le++  +li+DE+  + t+ l+++ + +++
  CCD23572.1 2784 LEERrVCLIIDESNILETAFLERMNTLLAN 2813
                  44554789********99999988777665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.37     2e+02      52      71 ..    1771    1790 ..    1764    1812 .. 0.89
   2 ?    4.6   0.0     0.046        24      38      68 ..    2037    2068 ..    2027    2102 .. 0.71
   3 !    9.9   0.0    0.0011      0.58      36      62 ..    2376    2402 ..    2369    2448 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.37
   IstB_IS21   52 llGpsGvGKshlaialgvea 71  
                  ++Gp+G+GK+    alg++ 
  CCD23572.1 1771 FFGPAGTGKTESVKALGQNL 1790
                  79**************9975 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.046
   IstB_IS21   38 LatlsfiekkenivllGpsGvGKsh.laialg 68  
                  L+  +f  ++++i+llG +G+GKs  l  +l+
  CCD23572.1 2037 LQLYNFQMSQDAIILLGDAGIGKSTiLRLTLS 2068
                  5556788899*************861444554 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0011
   IstB_IS21   36 keLatlsfiekkenivllGpsGvGKsh 62  
                  +e++ ++ +e++++i+l+Gp+G GK+ 
  CCD23572.1 2376 QEIRYTELLEANKAIILCGPPGSGKTM 2402
                  68889999*****************96 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0092       4.8       3      63 ..    1771    1832 ..    1770    1851 .. 0.72
   2 ?    3.5   0.0      0.18        94       1      36 [.    2049    2082 ..    2049    2102 .. 0.74
   3 ?    5.5   0.0     0.042        22       1      23 [.    2390    2409 ..    2390    2488 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0092
  RNA_helicase    3 lyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgq.evvvidDfgqvkd 63  
                    ++Gp+g+GK+  +k L ++l k++   + d++y  ++ +  + g ++  +  ++d+f++  +
    CCD23572.1 1771 FFGPAGTGKTESVKALGQNLGKTVIVFNCDDTYDFQSMSRLLTGISQIgAWGCFDEFNRLDE 1832
                    79*******************99977777888888888888888875404445555555544 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.18
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkklklkkkdsvys 36  
                    i+l G++g+GKSt+ +   ++++    + kk+ +y+
    CCD23572.1 2049 IILLGDAGIGKSTILRLTLSSISAL--SGKKNIIYT 2082
                    6899**********99965555532..345555555 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.042
  RNA_helicase    1 iwlyGpsgeGKStlakeLakall 23  
                    i+l+Gp+g GK+++ +++   ll
    CCD23572.1 2390 IILCGPPGSGKTMTLNNM---LL 2409
                    789**********99993...33 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3       1.3     7e+02      16      33 ..    1772    1789 ..    1769    1796 .. 0.81
   2 ?    6.1   0.0     0.025        13       7      45 ..    2043    2080 ..    2038    2157 .. 0.79
   3 !    8.7   0.0    0.0038         2      10      30 ..    2387    2407 ..    2380    2415 .. 0.87
   4 ?   -2.1   0.0       8.4   4.5e+03      90     116 ..    2774    2801 ..    2757    2815 .. 0.64

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.3
      AAA_19   16 taGpGtGKTrvlkhival 33  
                   +++GtGKT+ +k+  + 
  CCD23572.1 1772 FGPAGTGKTESVKALGQN 1789
                  589*******99987665 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.025
      AAA_19    7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeei 45  
                  +++++ +++++ +G GK+++l+  ++ + +l g k + i
  CCD23572.1 2043 QMSQDAIILLGDAGIGKSTILRLTLSSISALSGKK-NII 2080
                  5678899****************999999988764.333 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0038
      AAA_19   10 ekvllvtaGpGtGKTrvlkhi 30  
                  +k +++ ++pG+GKT +l+ +
  CCD23572.1 2387 NKAIILCGPPGSGKTMTLNNM 2407
                  68899************9876 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 8.4
      AAA_19   90 lleeaeeekklqeee.llivDEfqdvde 116 
                  +l+   ++ +l+e+  +li+DE+  ++ 
  CCD23572.1 2774 FLRMVLTKCTLEERRvCLIIDESNILET 2801
                  3333334456666667******987764 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.011       5.6       8      34 ..    1772    1802 ..    1766    1831 .. 0.90
   2 ?    2.6   0.1      0.18        95       5      20 ..    2049    2064 ..    2045    2086 .. 0.85
   3 !    7.8   0.1    0.0047       2.5       2      24 ..    2387    2412 ..    2386    2430 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.011
      AAA_24    8 yGpsgiGKTtlakel....gpkplfidtekG 34  
                  +Gp+g+GKT ++k l    g++++++++++ 
  CCD23572.1 1772 FGPAGTGKTESVKALgqnlGKTVIVFNCDDT 1802
                  8*****************9999999**9984 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.18
      AAA_24    5 iliyGpsgiGKTtlak 20  
                  i++ G++giGK+t+++
  CCD23572.1 2049 IILLGDAGIGKSTILR 2064
                  899**********987 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0047
      AAA_24    2 klkiliyGpsgiGKTtlakel...gp 24  
                  ++ i++ Gp+g+GKT++++++    p
  CCD23572.1 2387 NKAIILCGPPGSGKTMTLNNMllkSP 2412
                  57899**************9975544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0007      0.37      79     122 ..    2026    2069 ..    2004    2095 .. 0.79
   2 ?    4.5   0.0     0.056        30      94     122 ..    2381    2411 ..    2287    2440 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0007
                   EEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase   79 vllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpe 122 
                   ++++++  k+ l+  + +++++ ++l+G  G+GKSt++   l++
   CCD23572.1 2026 MFFTDELAKKCLQLYNFQMSQDAIILLGDAGIGKSTILRLTLSS 2069
                   567777778888888899999****************9876655 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.056
                   HHHCTT.SEEEEECSTTSSHH.HHHHHHCTT CS
  RsgA_GTPase   94 kellkd.ktsvlvGqSGvGKS.tLinallpe 122 
                   +ell+  k ++l+G+ G GK+ tL n+ll +
   CCD23572.1 2381 TELLEAnKAIILCGPPGSGKTmTLNNMLLKS 2411
                   445555499***********95666666654 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.6   8.5e+02     136     168 ..    1773    1804 ..    1770    1815 .. 0.82
   2 ?    3.1   0.0     0.079        41     127     166 ..    2044    2085 ..    2016    2108 .. 0.80
   3 !   10.8   0.0   0.00036      0.19     126     152 ..    2384    2410 ..    2368    2419 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.6
       T2SSE  136 GgTgsGKttllyallkeinksderivtvEDpvE 168 
                  G+ g+GKt ++ al + + k+   +    D+  
  CCD23572.1 1773 GPAGTGKTESVKALGQNLGKT-VIVFNCDDTYD 1804
                  9*************9999998.66666777665 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.079
       T2SSE  127 rerglilvsGgTgsGKttllyallkeinks..derivtvEDp 166 
                   ++  i++ G  g GK+t+l   l+ i +   +++i+   D+
  CCD23572.1 2044 MSQDAIILLGDAGIGKSTILRLTLSSISALsgKKNIIYTIDT 2085
                  467889999************999999887667777766565 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00036
       T2SSE  126 vrerglilvsGgTgsGKttllyallke 152 
                  +++++ i++ G+ gsGKt +l+ +l +
  CCD23572.1 2384 LEANKAIILCGPPGSGKTMTLNNMLLK 2410
                  345799***************998865 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.17        90      23      46 ..    1770    1793 ..    1753    1804 .. 0.81
   2 ?    6.1   0.0      0.02        11       8      42 ..    2030    2069 ..    2026    2078 .. 0.77
   3 ?    2.3   0.0      0.29   1.6e+02      18      40 ..    2384    2408 ..    2370    2426 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.17
                  EEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   23 lLeGdLGaGKTtlvrglakalgve 46  
                  ++ G+ G+GKT  v++l ++lg +
  CCD23572.1 1770 HFFGPAGTGKTESVKALGQNLGKT 1793
                  6789****************9865 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.02
                  HHHHHHHHHCH.....TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE    8 ealgkklakal.....gdvilLeGdLGaGKTtlvrglaka 42  
                  ++l+kk+ +       +d+i+L Gd G GK+t+ r  +++
  CCD23572.1 2030 DELAKKCLQLYnfqmsQDAIILLGDAGIGKSTILRLTLSS 2069
                  5666666664466666788**************9988766 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.29
                  H..TEEEEEEESTTSSHHHHHHHHH CS
        TsaE   18 l..gdvilLeGdLGaGKTtlvrgla 40  
                  l  +++i+L G+ G+GKT+   +++
  CCD23572.1 2384 LeaNKAIILCGPPGSGKTMTLNNML 2408
                  143678************8766554 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       3.1   1.6e+03      27      43 ..    1771    1787 ..    1767    1793 .. 0.82
   2 ?    1.4   0.0      0.34   1.8e+02      23      58 ..    2047    2082 ..    2029    2176 .. 0.71
   3 ?    8.3   0.0    0.0025       1.3      24      42 ..    2389    2407 ..    2382    2442 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.1
  Mg_chelatase   27 lvGppGsGKtmlakrlp 43  
                    ++Gp+G+GKt   k+l 
    CCD23572.1 1771 FFGPAGTGKTESVKALG 1787
                    78********9888775 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.34
  Mg_chelatase   23 HnlllvGppGsGKtmlakrlpsllpplseeealeva 58  
                      ++l+G +G GK+ + +   s +++ls ++ +  +
    CCD23572.1 2047 DAIILLGDAGIGKSTILRLTLSSISALSGKKNIIYT 2082
                    5799*********99888666656666555544433 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0025
  Mg_chelatase   24 nlllvGppGsGKtmlakrl 42  
                     ++l+GppGsGKtm  + +
    CCD23572.1 2389 AIILCGPPGSGKTMTLNNM 2407
                    699***********87765 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0         2   1.1e+03      23      53 ..    1773    1801 ..    1772    1805 .. 0.91
   2 ?    1.7   0.0      0.26   1.4e+02      13      41 ..    2043    2071 ..    2031    2085 .. 0.79
   3 ?    7.6   0.0    0.0039       2.1      11      37 ..    2381    2408 ..    2371    2417 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2
  Zeta_toxin   23 GqpGAGKselaellkdelerqgnvvrldpDd 53  
                  G  G GK+e  ++l ++l  ++ v++++ Dd
  CCD23572.1 1773 GPAGTGKTESVKALGQNL--GKTVIVFNCDD 1801
                  5679**************..99*****9998 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.26
  Zeta_toxin   13 qerPklillgGqpGAGKselaellkdele 41  
                  q + ++i+l G  G GKs++++l+  ++ 
  CCD23572.1 2043 QMSQDAIILLGDAGIGKSTILRLTLSSIS 2071
                  55668999**************9988775 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0039
  Zeta_toxin   11 psq.erPklillgGqpGAGKselaellk 37  
                  ++  e  k+i+l G pG+GK+ +++ + 
  CCD23572.1 2381 TELlEANKAIILCGPPGSGKTMTLNNML 2408
                  55557789*************9998765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.6   3.2e+02      34      51 ..    2047    2064 ..    2039    2083 .. 0.80
   2 ?    9.6   0.0    0.0012      0.61      25      54 ..    2379    2408 ..    2369    2411 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.6
      AAA_25   34 elallaGapgtGKttlal 51  
                  + ++l G+ g GK+t++ 
  CCD23572.1 2047 DAIILLGDAGIGKSTILR 2064
                  6799***********975 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0012
      AAA_25   25 lvkgllpagelallaGapgtGKttlaldla 54  
                   + +ll a++ ++l+G+pg+GKt+ + ++ 
  CCD23572.1 2379 RYTELLEANKAIILCGPPGSGKTMTLNNML 2408
                  5678999*****************887765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0055       2.9      19      39 ..    2042    2063 ..    2036    2067 .. 0.82
   2 ?    1.5   0.0      0.47   2.5e+02      23      37 ..    2388    2402 ..    2379    2411 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0055
      AAA_29   19 idlkg.atlltGpsGsGKSTll 39  
                  +++++ a++l G+ G GKST+l
  CCD23572.1 2042 FQMSQdAIILLGDAGIGKSTIL 2063
                  44455589************98 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.47
      AAA_29   23 gatlltGpsGsGKST 37  
                   a++l Gp GsGK+ 
  CCD23572.1 2388 KAIILCGPPGSGKTM 2402
                  37899********85 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.4   7.2e+02      38      63 ..    2047    2070 ..    2037    2090 .. 0.75
   2 ?    9.1   0.0    0.0014      0.74      27      61 ..    2375    2409 ..    2360    2410 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.4
                    S-.SEEEE--TTSSHHHHHHHHHHHH CS
  FtsK_SpoIIIE   38 mashllvaGatgsGKStalntLilSl 63  
                     a  ++++G  g GKSt l+  + S+
    CCD23572.1 2047 DA--IILLGDAGIGKSTILRLTLSSI 2070
                    34..899************9766665 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0014
                    TS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHHHH CS
  FtsK_SpoIIIE   27 sgnplvldlkkmashllvaGatgsGKStalntLil 61  
                    s ++ +++l ++   ++++G +gsGK+ +ln+++l
    CCD23572.1 2375 SQEIRYTELLEANKAIILCGPPGSGKTMTLNNMLL 2409
                    5666666666666789*****************96 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.015       7.9       2      18 ..    2048    2064 ..    2047    2076 .. 0.88
   2 ?    5.1   0.0     0.036        19       3      22 ..    2390    2409 ..    2388    2440 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.015
                  CEEEEC-TTTCHHHHHH CS
       NACHT    2 lvilqGeaGsGKTtLlq 18  
                   +il G+aG+GK+t l+
  CCD23572.1 2048 AIILLGDAGIGKSTILR 2064
                  589***********997 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.036
                  EEEEC-TTTCHHHHHHHHHH CS
       NACHT    3 vilqGeaGsGKTtLlqklal 22  
                  +il G++GsGKT+ l  + l
  CCD23572.1 2390 IILCGPPGSGKTMTLNNMLL 2409
                  8999*********9988765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.09        47       4      24 ..    1771    1792 ..    1770    1803 .. 0.83
   2 ?    4.0   0.0       0.1        54       2      19 ..    2390    2407 ..    2389    2418 .. 0.89
   3 ?   -0.1   0.0       1.8   9.6e+02       3      36 ..    2733    2768 ..    2732    2790 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.09
      AAA_28    4 itGgestGKTtlleaLaar.gy 24  
                  ++G+ +tGKT  ++aL ++ g 
  CCD23572.1 1771 FFGPAGTGKTESVKALGQNlGK 1792
                  68**************988743 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.1
      AAA_28    2 ivitGgestGKTtlleaL 19  
                  i++ G++++GKT +l+++
  CCD23572.1 2390 IILCGPPGSGKTMTLNNM 2407
                  89***********99875 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 1.8
      AAA_28    3 vitGgestGKTtlleaLaar.gypvv.pEaareile 36  
                  +++G+e+ GK  +++  a   g+ v+ p ++r+++ 
  CCD23572.1 2733 MLIGAECIGKKIMTNFVAWLnGIIVLePNIHRRYTL 2768
                  589*******99999999644888888999998875 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       2.3   1.2e+03       8      34 ..    1763    1789 ..    1757    1861 .. 0.86
   2 ?   10.0   0.1    0.0018      0.95       9      41 ..    2045    2076 ..    2037    2115 .. 0.77
   3 ?    4.7   0.0     0.075        40       8      32 ..    2384    2408 ..    2381    2436 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 2.3
                  EETTSEEEEEESTTSSHHHHHHHHTTS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran    8 lkegekvaivGenGaGKStLlkllagl 34  
                  +++g    ++G+ G+GK+  +k+l ++
  CCD23572.1 1763 FQQGYGGHFFGPAGTGKTESVKALGQN 1789
                  6666666789********999998765 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0018
                  ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran    9 kegekvaivGenGaGKStLlkllagllkpteGe 41  
                  +++  + ++G+ G GKSt+l+l +   +  +G+
  CCD23572.1 2045 SQD-AIILLGDAGIGKSTILRLTLSSISALSGK 2076
                  444.46799************999888887776 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.075
                  EETTSEEEEEESTTSSHHHHHHHHT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran    8 lkegekvaivGenGaGKStLlklla 32  
                  l++++ + + G+ G+GK+  l+ ++
  CCD23572.1 2384 LEANKAIILCGPPGSGKTMTLNNML 2408
                  57889999**********8887654 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       2.8   1.5e+03       3      22 ..    2049    2071 ..    2047    2201 .. 0.67
   2 ?   10.0   0.1   0.00091      0.48       2      26 ..    2389    2413 ..    2388    2427 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.8
                  EEEEESTTCCHHHHHHHHH...C CS
        cobW    3 tvltGflGsGKTtLlnhll...e 22  
                  ++l G  G GK+t+l+ +l   +
  CCD23572.1 2049 IILLGDAGIGKSTILRLTLssiS 2071
                  67778888888888887774332 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00091
                  EEEEEESTTCCHHHHHHHHHCT--S CS
        cobW    2 vtvltGflGsGKTtLlnhllenrag 26  
                  +++l+G++GsGKT+ ln++l ++ +
  CCD23572.1 2389 AIILCGPPGSGKTMTLNNMLLKSPK 2413
                  689****************966554 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.3    0.0013      0.67      23      54 ..    3193    3224 ..    3188    3226 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0013
     DUF1192   23 eELeerIalLeaEIaRleaaiakkkasraAAe 54  
                   E+ erI+ L++E+a +e+++ k++a   AAe
  CCD23572.1 3193 GEILERIEPLQQEVAIVEEETLKARARLLAAE 3224
                  6999**************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4076 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1470  (0.0819901); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        42  (0.00234257); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 1.88u 0.32s 00:00:02.19 Elapsed: 00:00:00.48
# Mc/sec: 25522.28
//
Query:       CCD23573.1  [L=295]
Description: hypothetical protein NDAI_0B05400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-50  170.0   0.0      4e-50  169.6   0.0    1.2  1  Ras          Ras family
    7.7e-24   84.2   0.0    1.8e-23   83.1   0.0    1.6  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    2.3e-08   33.7   0.0    3.2e-08   33.2   0.0    1.2  1  Arf          ADP-ribosylation factor family
      0.002   18.2   0.0     0.0037   17.3   0.0    1.7  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0075   16.2   0.2       0.22   11.4   0.0    2.5  3  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.027   13.8   0.0      0.043   13.2   0.0    1.4  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
       0.15   12.1   0.0       0.82    9.8   0.0    2.2  3  TEA          TEA/ATTS domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.6   0.0   1.6e-53     4e-50       1     160 [.      74     238 ..      74     240 .. 0.95

  Alignments for each domain:
  == domain 1  score: 169.6 bits;  conditional E-value: 1.6e-53
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET.TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd.gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveei 97 
                 K+v+vGd++vGKt+ll+++v+++F+++y++T+ +++y++++++   + ++l +wDTAGqee+++lr+l+y+d+++++++y++++++s+e+v+  w+ e+
  CCD23573.1  74 KIVVVGDGNVGKTCLLISYVNNEFPTDYIPTV-FENYVTSVNMPnREVIELALWDTAGQEEYNRLRPLSYTDVDVLMVCYSVDNKTSLEHVEeLWFPEV 171
                 9*******************************.*********99355689******************************************88***** PP

                 HHHSTTTSEEEEEEETTTGGG....G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  98 krvaeenvpivLvGnKvDlee....kravsteegeelakelg.lkfletSAktnenveeafeellrei 160
                 ++ + + +p++L+G K+Dl      +  v+t+++e +ak++g + +l++SAk++ nvee+f+++++ +
  CCD23573.1 172 RHFCGK-TPVMLIGLKSDLYAedkgEGLVETKHAELIAKKMGaFVHLQCSAKSRDNVEEVFNKAIEIV 238
                 *****5.************997788889**************99******************998765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   6.9e-27   1.8e-23       1     119 [.      74     188 ..      74     189 .. 0.86

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 6.9e-27
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE..GHHH.HCH. CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd..srss.enl. 95 
                 K+v+vGd++vGKt+ll ++v+++f +++ +t+  +++t+ v   +      + + ++l++WDtaGqe+++ l+pl +++ ++++++y   +++s e++ 
  CCD23573.1  74 KIVVVGDGNVGKTCLLISYVNNEFPTDYIPTVFENYVTS-V---NM-P---NREVIELALWDTAGQEEYNRLRPLSYTDVDVLMVCYSvdNKTSlEHVe 164
                 9*******************************9999875.3...32.2...235799*****************************9743333335552 PP

                 HHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  96 keWlkelkkvagkspvilvgnkiD 119
                 + W+ e+++ +gk+pv+l+g k D
  CCD23573.1 165 ELWFPEVRHFCGKTPVMLIGLKSD 188
                 56********************99 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.2e-11   3.2e-08       9     171 ..      67     234 ..      59     238 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.2e-11
                 TT.TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEE.EEEEEE...TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHH CS
         Arf   9 klkkkelrilllGLDnaGKtTilkklkleelvt.tvPTigfn.veelei...knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeake 102
                 k ++ +l+i+++G  n GKt +l  + ++e+ t  +PT+  n v ++++   + +++ +wD  Gqe+  +l    ++++d+++ +  + d++   e  e
  CCD23573.1  67 KVADYHLKIVVVGDGNVGKTCLLISYVNNEFPTdYIPTVFENyVTSVNMpnrEVIELALWDTAGQEEYNRLRPLSYTDVDVLMVCYSV-DNKTSLEHVE 164
                 5557899***********************987699**987746788885545699***************9999*****98876655.5544445567 PP

                 HHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEE.EEEBTTTTBTHHHHHHHH CS
         Arf 103 eLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrklei.qkcsavkgeglkeglewl 171
                 eL     ++   + ++++++ K Dl    + e l e+ + e + +k    +  +csa ++++++e +++ 
  CCD23573.1 165 ELWFPEVRHFCGKTPVMLIGLKSDLYAEDKGEGLVETKHAELIAKKMGAFVhLQCSAKSRDNVEEVFNKA 234
                 777766777778999999999****999999999999999888866655552589999999999999875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.4e-06    0.0037       1      84 [.      74     153 ..      74     239 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE..ETT.EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk..lkg.keielvDtpGliegaseekglgkaflaleeadlillvvd 84 
                 ++++vG  NvGK+ L+ + ++++  +  +p +  + ++  v+   ++  e+ l+Dt+G  e     +  + + l+  ++d+++++ +
  CCD23573.1  74 KIVVVGDGNVGKTCLLISYVNNEFPTDYIPTVFENYVTS-VNmpNREvIELALWDTAG-QE-----EYNRLRPLSYTDVDVLMVCYS 153
                 699******************999998888666665444.22223335779*******.44.....222222233334444433333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.12   3.1e+02     102     120 ..      75      93 ..      36     105 .. 0.78
   2 !    6.9   0.0    0.0021       5.3      15     108 ..      82     178 ..      81     180 .. 0.73
   3 !   11.4   0.0   8.5e-05      0.22      11     114 ..     140     249 ..     131     271 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.12
                  EEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase 102 svlvGqSGvGKStLinall 120
                  +v+vG   vGK+ L+ + +
   CCD23573.1  75 IVVVGDGNVGKTCLLISYV 93 
                  68899999****9986655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0021
                  S--EEEEEEESTTTT--HHHHHHHHHHHH.HTT-..EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECST CS
  RsgA_GTPase  15 NvdqllivvslkepelslnlldrfLvlae.ekgi..epvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkdktsvlvGqS 108
                  Nv + ++++s +++e+ ++ +  +   +  + ++  + vi l   D + +ee  +     ++++++ +++ s+++k++le+++el+  ++  ++G++
   CCD23573.1  82 NVGKTCLLISYVNNEFPTDYIPTVFENYVtSVNMpnREVIELALWDTAGQEEYNRLRPLSYTDVDVLMVCYSVDNKTSLEHVEELWFPEVRHFCGKT 178
                  6667777777777777776665544332202222225678889999999999555556789999999****************************87 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 8.5e-05
                  TTEES--EEEEEEESTTTT--HHHHHHHHHHHHH...TT-EEEEEEE-GGG--HHH.....HHHHHHHHHHHTTSEEE.E--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  11 pkvaNvdqllivvslkepelslnlldrfLvlaee...kgiepvivlnKiDlleeee.....eleelkeelealgyevl.lvsaktkegleelkellkd 99 
                   + + vd l+++ s++ +++sl+ ++ + +   +    + +++++  K Dl+ e++     e+++ +   +++g  v   +sa   ++ ++++e++++
   CCD23573.1 140 LSYTDVDVLMVCYSVD-NKTSLEHVEELWFPEVRhfcGKTPVMLIGLKSDLYAEDKgeglvETKHAELIAKKMGAFVHlQCSA---KSRDNVEEVFNK 233
                  4577899999999*99.999999999865432220113455666667********9999776666666677777554314444...577888899999 PP

                  SEEEEECST.TSSHHH CS
  RsgA_GTPase 100 ktsvlvGqS.GvGKSt 114
                   + +++G S G GK +
   CCD23573.1 234 AIEIVLGDSrGDGKAS 249
                  9******998999976 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.7e-05     0.043       1     140 [.      74     206 ..      74     229 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletlk 99 
                 k++ +G ++ GKt++     +n  ++d +       v+  ++ + + ++l lwD  Gqe++        +   +++v+vl+    v+++   e++e+l 
  CCD23573.1  74 KIVVVGDGNVGKTCLLISYVNNEFPTDYIPTVFENYVTSVNMPNREVIELALWDTAGQEEYNRL-----RPLSYTDVDVLMVCYSVDNKTSLEHVEEL- 166
                 78999*********9988889999****9999999999999999**************987544.....44555556655544444322222222222. PP

   Gtr1_RagA 100 eilealrqyspeakvfvlihKmDliqedereeifeerkeei 140
                   + ++r++  +  v  +  K Dl +ed+ e ++e++++e+
  CCD23573.1 167 -WFPEVRHFCGKTPVMLIGLKSDLYAEDKGEGLVETKHAEL 206
                 .3455556666666666666666666666666666666555 PP

>> TEA  TEA/ATTS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       5.1   1.3e+04      30      46 ..      15      31 ..       6      34 .. 0.62
   2 ?    9.8   0.0   0.00032      0.82       2      27 ..      38      63 ..      37      96 .. 0.86
   3 ?   -1.4   0.0         1   2.5e+03       7      21 ..     225     241 ..     224     272 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.1
         TEA 30 legklhgRnelIseyIl 46
                + +k h  n+ Is+ ++
  CCD23573.1 15 YSKKEHLYNQSISSEVA 31
                45566667777777665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00032
         TEA  2 ekvWppeledafleallliPpmgrrk 27
                e++W+p+l +af   l  iP+ ++ k
  CCD23573.1 38 EEKWKPKLSSAFARTLSSIPSYEQMK 63
                789****************9876544 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1
         TEA   7 peledafleallli..P 21 
                 +++e++f +a++++   
  CCD23573.1 225 DNVEEVFNKAIEIVlgD 241
                 57899999998877442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2143.40
//
Query:       CCD23574.1  [L=599]
Description: hypothetical protein NDAI_0B05410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-23   81.3   0.4    8.1e-22   77.7   0.4    2.2  1  tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
    2.1e-11   43.7   0.1    4.3e-11   42.6   0.1    1.6  1  TRAM             TRAM domain
    1.3e-07   31.5   0.0    3.2e-07   30.3   0.0    1.6  1  Methyltransf_31  Methyltransferase domain
    3.6e-06   27.6   0.1    1.1e-05   26.0   0.0    1.9  2  Methyltransf_25  Methyltransferase domain
    1.5e-05   24.7   0.0    3.8e-05   23.3   0.0    1.7  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
    2.4e-05   23.9   0.0      4e-05   23.2   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
    0.00011   21.9   0.0    0.00025   20.7   0.0    1.6  1  Cons_hypoth95    Conserved hypothetical protein 95
    0.00023   20.6   0.1     0.0051   16.2   0.0    2.5  2  Ubie_methyltran  ubiE/COQ5 methyltransferase family
     0.0013   18.3   0.0     0.0026   17.3   0.0    1.4  1  MTS              Methyltransferase small domain
     0.0078   16.0   0.1      0.064   13.0   0.1    2.2  2  DUF2606          Protein of unknown function (DUF2606)
     0.0079   16.8   0.0      0.031   14.9   0.0    2.0  2  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
      0.021   14.3   0.0      0.058   12.9   0.0    1.7  1  Methyltransf_4   Putative methyltransferase
      0.022   14.5   0.0      0.075   12.8   0.0    1.9  2  Met_10           Met-10+ like-protein


Domain annotation for each model (and alignments):
>> tRNA_U5-meth_tr  tRNA (Uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.4   5.9e-25   8.1e-22     137     356 ..     374     598 ..     355     599 .] 0.77

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 5.9e-25
  tRNA_U5-meth_tr 137 qeldvnligr.arkkkivldkdyveeklevadr...elvyrqvensftqPnaavnekmleWalevtq...eskg...dllelycGnGnfslala 220
                      ++ +v+ i    +k+ + l k  v+++ ++       ++++++ + f q n ++   + +++ + +q   ++++    l++ ycG G fs+  +
       CCD23574.1 374 ENGKVSFIEVdDKKHNVKLAKTCVTHQRQIVTEyvdGYTFNFTAGEFFQNNNSILPVVTKYVRDNLQlpnSKENeprYLVDAYCGSGLFSICSS 467
                      5555666654145667888888888777766541214678899999***99998776666666554322133322237**************** PP

  tRNA_U5-meth_tr 221 rnfekvlateiakssveaaqyniaankidnvqiirlsaeeltealkkkrefrrlkgidlksyafetifvdPPraGldketvklvkky..erily 312
                      + + +v+  ei+  sv++a +n +an i+n ++i   ae l e+++                +  ++++dPPr G d+  +k +++y   ri+y
       CCD23574.1 468 KGVDRVIGVEISADSVSFAEKNAKANGIKNCKFIAGKAEKLFESIDTPN-------------DKTSVILDPPRKGCDDIFLKQLSTYypARIVY 548
                      **********************************999999987766543.............3467999***********99998885569*** PP

  tRNA_U5-meth_tr 313 iscnPetlkenle......elsethrverlalfdqfpythhlesGvllek 356
                      iscn ++ ++++e      e+ + ++ve +  fd fp thh+es  +l++
       CCD23574.1 549 ISCNVHSQAKDIEyfiketEMGHNYKVESIRGFDFFPQTHHVESVAVLTR 598
                      *******9999972222223344569******************988876 PP

>> TRAM  TRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.1   3.1e-14   4.3e-11       1      62 []     126     190 ..     126     190 .. 0.98

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 3.1e-14
                 XXXXXXEEEEEEEEE-.TTSEEEEEET.......TEEEEETT--T..TEEEEEEEEEE-SSEEEEEEE CS
        TRAM   1 rsyvGstqeVlveglsksegegiGrtdn......gkvvfvpgdlpgIGdfVeVkItkvkrqyLrGell 62 
                 ++y++++ +V+v +ls s+g+g++ +dn      +++v +p++lp   d+V++k++k+++ y +++ll
  CCD23574.1 126 KQYHREVRNVKVLKLS-SNGDGLAIIDNpvekdkKQIVTIPFGLP--DDVVDIKVFKTHPTYVESDLL 190
                 689*************.****************************..*****************9986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   2.3e-10   3.2e-07       7      68 ..     452     511 ..     446     540 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 2.3e-10
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.lek 68 
                      ++D+ CG+G +++   + +    +v+G++is++++++A++na+ +g++n++F +g +e+ +e+
       CCD23574.1 452 LVDAYCGSGLFSICSSKGV---DRVIGVEISADSVSFAEKNAKANGIKNCKFIAGKAEKlFES 511
                      6788899987776666322...35**********************************95554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       8.9   1.2e+04      23      54 ..     353     384 ..     348     398 .. 0.75
   2 !   26.0   0.0   8.1e-09   1.1e-05       3      58 ..     454     508 ..     452     524 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.9
                      EEEEEESSHHHHHHHHHHHHHTTTTEEEEESB CS
  Methyltransf_25  23 kvtgvDiseemleaareraeeeglnvefvqgd 54 
                      + + +D+s++  e+  e  ++e+ +v+f++ d
       CCD23574.1 353 NTIILDPSKDIDEQLGEGSRDENGKVSFIEVD 384
                      56778888888888888888877788887766 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 8.1e-09
                      EET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGB CS
  Methyltransf_25   3 dlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl.nvefvqgdaedl 58 
                      d+ cG+G +++  +k +   +v+gv+is++ +  a+++a+++g+ n++f+ g+ae+l
       CCD23574.1 454 DAYCGSGLFSICSSKGV--DRVIGVEISADSVSFAEKNAKANGIkNCKFIAGKAEKL 508
                      888********999998..9**********************************997 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.8e-08   3.8e-05       2      83 ..     450     529 ..     449     539 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2.8e-08
  Methyltransf_15   2 rvilDlfsGaGGnviqfalvfekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlvflSpPwGG 83 
                      r+++D+++G+G  +i   +  ++vi++ei+ + +  a++Na++ g++ + +++ g+ ++l++++ + + k++ v+l pP  G
       CCD23574.1 450 RYLVDAYCGSGLFSICSSKGVDRVIGVEISADSVSFAEKNAKANGIK-NCKFIAGKAEKLFESIDTPNDKTS-VILDPPRKG 529
                      689*****************************************996.689***************999665.566777666 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.9e-08     4e-05     160     214 ..     447     501 ..     438     523 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.9e-08
        PrmA 160 kegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.kle 214
                 +e + ++D  +GSG+ +i ++k g ++v++v i   +v+ a++Na+ N++++ k+ 
  CCD23574.1 447 NEPRYLVDAYCGSGLFSICSSK-GVDRVIGVEISADSVSFAEKNAKANGIKNcKFI 501
                 44567889************99.***************************996663 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.8e-07   0.00025      43     123 ..     450     527 ..     432     568 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.8e-07
                    -EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SS CS
  Cons_hypoth95  43 arvLDlfaGsGalglEAlSRgakkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPy 123
                      ++D ++GsG  ++ + S g+++++ ve ++  v+  ++n ++ ++++ ++ +  +a++ +++   + +    v lDPP 
     CCD23574.1 450 RYLVDAYCGSGLFSI-CSSKGVDRVIGVEISADSVSFAEKNAKANGIKN-CKFIAGKAEKLFESI-DTPNDKTSVILDPPR 527
                    5579*******9999.88*****************************97.999999999999888.5555669999****5 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.098   1.4e+02      99     128 ..     136     170 ..      92     196 .. 0.72
   2 !   16.2   0.0   3.7e-06    0.0051      44     116 ..     445     514 ..     371     522 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.098
                      TEEEEE--TTT-.....TTS-T-EEEEEEES-GGG CS
  Ubie_methyltran  99 nieflqanaeeL.....pfeddsfDvvtvsfGlrn 128
                      ++  l +n+  L     p e+d + +vt+ fGl +
       CCD23574.1 136 KVLKLSSNGDGLaiidnPVEKDKKQIVTIPFGLPD 170
                      55555666665522222567788999999999954 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.7e-06
                      -S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T- CS
  Ubie_methyltran  44 avkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegkinieflqanaeeLpfedds 116
                       + +++ ++D  +G+g +++  s+ v+   +v++++i+++ ++ +ek +k +g +n +f+ ++ae+L ++ d+
       CCD23574.1 445 KENEPRYLVDAYCGSGLFSICSSKGVD---RVIGVEISADSVSFAEKNAKANGIKNCKFIAGKAEKLFESIDT 514
                      55677889999****988887777665...799*********************************9665444 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.9e-06    0.0026      30      91 ..     447     507 ..     437     532 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.9e-06
                 CTCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTT CS
         MTS  30 elsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevvasdvle 91 
                 ++ + ++D  cG G+ ++   k  ++  v  v+++a ++ +a++n++an+++ ++++a  + +
  CCD23574.1 447 NEPRYLVDAYCGSGLFSICSSKGVDR--VIGVEISADSVSFAEKNAKANGIKnCKFIAGKAEK 507
                 3555689************9998888..99*********************997777654433 PP

>> DUF2606  Protein of unknown function (DUF2606)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   4.6e-05     0.064      65     118 ..     351     404 ..     340     413 .. 0.81
   2 ?   -0.0   0.0      0.51     7e+02      42     105 ..     481     536 ..     461     559 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.6e-05
     DUF2606  65 kdessdeePskeiGiilGk..tdkeGdvkwdtvrkGdyivaltknetsvthqivli 118
                 ++++   +Psk+i + lG    d++G+v + +v   ++ v l+k  t+vthq  ++
  CCD23574.1 351 RENTIILDPSKDIDEQLGEgsRDENGKVSFIEVDDKKHNVKLAK--TCVTHQRQIV 404
                 55555568*********86337********************97..6779986665 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.51
     DUF2606  42 isvtlhvkdkkklPvkdvevilvkdessdeePskeiGiilGktdkeGdvkwdtvrkGdyivalt 105
                  sv++  k++k   +k+ + i  k+e           +++   +++  v+ d  rkG   ++l 
  CCD23574.1 481 DSVSFAEKNAKANGIKNCKFIAGKAEKL--------FESIDTPNDKTSVILDPPRKGCDDIFLK 536
                 5788888888888888888887777654........3444444455555555555555555555 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.1   7.1e+03      20      44 ..     379     404 ..     371     420 .. 0.70
   2 !   14.9   0.0   2.2e-05     0.031       4      55 ..     456     508 ..     453     515 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.1
                      EEEEEES-HHHHHHHHHHCCHHT-.E CS
  Methyltransf_11  20 rvvgvDlskemlklakekaseegl.k 44 
                      + + vD  k  +klak+++  ++   
       CCD23574.1 379 SFIEVDDKKHNVKLAKTCVTHQRQiV 404
                      56788889999999999988887543 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.2e-05
                      T-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-.EEEETTEECCCT CS
  Methyltransf_11   4 GcGtGrlaealakrgarvvgvDlskemlklakekaseegl.kvefvvadaekl 55 
                       cG+G+++    k + rv+gv++s+  +  a+++a+ +g+ +++f+ + aekl
       CCD23574.1 456 YCGSGLFSICSSKGVDRVIGVEISADSVSFAEKNAKANGIkNCKFIAGKAEKL 508
                      599999999999777************************************97 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.2e-05     0.058      10      68 ..     457     512 ..     450     523 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
                     -TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTTSSEEEEES-CCCHHHHCS CS
  Methyltransf_4  10 cGkGeflvalAkknPdknflGiEirvkvvakvlkkiealelkNlrilrgdalkvllell 68 
                     cG+G f   +   +    ++G+Ei+ ++v  + k+++a+++kN + + g a + l e++
      CCD23574.1 457 CGSGLFS--ICSSKGVDRVIGVEISADSVSFAEKNAKANGIKNCKFIAGKA-EKLFESI 512
                     5555444..4455566789********************************.5555555 PP

>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.5   4.8e+03     141     161 ..      98     118 ..      95     132 .. 0.84
   2 ?   12.8   0.0   5.4e-05     0.075     102     151 ..     450     497 ..     433     535 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.5
                 HHHHHHTT-TTCEEEEES-GG CS
      Met_10 141 keniklNkvekvvkpileDgr 161
                 ++n+++ ++++ v++il+D  
  CCD23574.1  98 EQNLTREQISNNVTSILNDFP 118
                 58999999*******999965 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 5.4e-05
                 -EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TT CS
      Met_10 102 evVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvek 151
                    vd + G G f+i  +k     rv+++++  +sv + ++n k N +++
  CCD23574.1 450 RYLVDAYCGSGLFSICSSK--GVDRVIGVEISADSVSFAEKNAKANGIKN 497
                 4689**************9..5556*********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 4619.10
//
Query:       CCD23575.1  [L=110]
Description: hypothetical protein NDAI_0B05420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-33  113.9   0.0    3.5e-33  113.6   0.0    1.1  1  Ribosomal_S21e   Ribosomal protein S21e
  ------ inclusion threshold ------
      0.065   13.3   0.0       0.13   12.3   0.0    1.5  1  VCH_CASS14       Integron cassette protein VCH_CASS1 chain
       0.12   12.2   0.1       0.15   11.9   0.1    1.1  1  Glyco_hydro2_C5  Glycoside hydrolase family 2 C-terminal doma


Domain annotation for each model (and alignments):
>> Ribosomal_S21e  Ribosomal protein S21e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   5.8e-37   3.5e-33      10      79 .]      33     103 ..      31     103 .. 0.98

  Alignments for each domain:
  == domain 1  score: 113.6 bits;  conditional E-value: 5.8e-37
  Ribosomal_S21e  10 dlYiPrkcsatnrlItakDhasvqinvaevdetGra.tgesttyalsgairrkGesddslnrlakkdgllk 79 
                     +lY+Prkcsatnr+I+a+Dhasvqin+a+vde+Gra  ge+ tyal+g++r++Ge+ddslnrla++dgllk
      CCD23575.1  33 ELYVPRKCSATNRIIKADDHASVQINIAKVDEEGRAiPGEYITYALAGTVRARGEADDSLNRLAQNDGLLK 103
                     8**********************************99*******************************985 PP

>> VCH_CASS14  Integron cassette protein VCH_CASS1 chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.2e-05      0.13      21      54 ..      73     107 ..      55     108 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.2e-05
  VCH_CASS14  21 eiilalagavlakke.dekvevleddgdlkrvlWa 54 
                  i+ alag+v+a+ e d++++ l ++++l + +W 
  CCD23575.1  73 YITYALAGTVRARGEaDDSLNRLAQNDGLLKNVWS 107
                 6999**********9999***********999995 PP

>> Glyco_hydro2_C5  Glycoside hydrolase family 2 C-terminal domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.5e-05      0.15       3      45 ..      40      80 ..      39      99 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.5e-05
  Glyco_hydro2_C5  3 ltadrtelkadgkDlafvtvevvDknGnlvpnadnevtfeveG 45
                     ++a ++ +kad++  +++++  vD++G+ +p   + +t  + G
       CCD23575.1 40 CSATNRIIKADDHASVQINIAKVDEEGRAIPG--EYITYALAG 80
                     6788999***********************98..556666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 838.52
//
Query:       CCD23576.1  [L=567]
Description: hypothetical protein NDAI_0B05430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-28   98.9   3.3    3.5e-28   98.9   0.1    2.6  2  Glyco_transf_8  Glycosyl transferase family 8
  ------ inclusion threshold ------
      0.067   12.6   0.3       0.15   11.5   0.3    1.5  1  DUF1460         Protein of unknown function (DUF1460)


Domain annotation for each model (and alignments):
>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.1   3.9e-32   3.5e-28       3     253 ..      10     259 ..       8     261 .. 0.94
   2 ?   -2.9   0.4      0.45     4e+03      38      75 ..     293     338 ..     285     361 .. 0.64

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 3.9e-32
  Glyco_transf_8   3 alaldknYllgasvviksllknakep.......awfalnfhiltaeievenleklnklassykevlellesdkksledfesklklrspkylslln 90 
                     +l ++ +Yl+g+ ++ ++l k+ ke+        ++++++++++  + +  +e l +l ++++++++l + d+ ++++  +++    ++ + +  
      CCD23576.1  10 TLLYSPDYLPGTFTLGHQLNKLLKEAdkeqqisTCLLITKPLFQNVLSDFAREMLSSLYKEIIQIEPLSDNDSIIESN--NENLTLLKRPELSFA 102
                     577899*********99999999999999******************************************9988775..6999999******** PP

  Glyco_transf_8  91 ylRlylpelfpkldkilylDaDvvv.qgdlseLwdldlkgkvlaavedkrfkkylnksepliaenfkpeacyFnaGvllfdldewrkenitetli 184
                     +++ +l+el  ++d++lylD+D+++ + d+ +L++   +                +++ +l a++++ ++++Fn+G++++ +d+ ++  +++++i
      CCD23576.1 103 LVKTRLWEL-TQFDQVLYLDSDTLPlNVDFLNLFSELSE----------------QTKYQLGASPDIGWPDMFNSGMMMLVPDSETAVALQKFVI 180
                     *********.***************99999999974444................56778888899***************************** PP

  Glyco_transf_8 185 kwlnlnekrtllklgdqdilnivfk................gkvkeldkkynvlglgy.eqskkskkeitenaaviHyiGpaKPWl 253
                     + ++++++       dq iln++f+                +++++l++ ynv++ +  +q  +++k++  ++++iH+iG+ KPW+
      CCD23576.1 181 DEVSIDGA-------DQGILNQFFNeycrnpkedsitdssqREWIKLSFLYNVTTPNHgYQCPPAMKHFGPQIKLIHFIGKNKPWR 259
                     ********.......*****************************************9999*************************7 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.45
  Glyco_transf_8  38 ltaeievenleklnklassykevlellesdkksledf........e 75 
                     +++e  +e ++++++  ++y + +e +++++k +++         +
      CCD23576.1 293 SDDERASEPQQEIQAEHQEYEKPVESVDQNIKLENYVqeecvepsT 338
                     5666666777777777777777777777777776665544444441 PP

>> DUF1460  Protein of unknown function (DUF1460)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   1.6e-05      0.15      73     152 ..     263     341 ..     254     346 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.6e-05
                 B--STTTHHHHHHHT.SEEE-GGG-B-TT-EEE--EEEHHHHHHTHHHHHHHHHHHHHHHTT--EEEEEEHHHH-HHHHTT CS
     DUF1460  73 RkHffsdWiannqkr.llrdvtaeisnkkaktlkalvtkkkkynqkadeeellaglkvvekalkklkYipkealdqavlsr 152
                 R+H+ s W+ + ++    +dvt+++s+ + +  + +++ +++   +a+++e+ + +++v++++k  +Y+ +e ++ +++s+
  CCD23576.1 263 RNHYSSRWMDTYEEFqGEHDVTNRLSTIRLSDDERASEPQQEI--QAEHQEYEKPVESVDQNIKLENYVQEECVEPSTISQ 341
                 9********999888799*********4444444444444444..4689999999********8889**999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2297  (0.128116); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.32s 00:00:01.28 Elapsed: 00:00:00.47
# Mc/sec: 3629.36
//
Query:       CCD23577.1  [L=396]
Description: hypothetical protein NDAI_0B05440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-44  150.4   1.3      5e-44  150.1   0.3    1.6  2  DEAD        DEAD/DEAH box helicase
    3.3e-31  107.9   0.2      1e-30  106.4   0.1    1.8  2  Helicase_C  Helicase conserved C-terminal domain
    2.3e-07   31.0   0.0    4.9e-07   29.9   0.0    1.5  1  ResIII      Type III restriction enzyme, res subunit
    0.00082   19.1   0.1     0.0014   18.4   0.1    1.3  1  AAA_30      AAA domain
     0.0013   19.0   0.2      0.019   15.3   0.1    2.2  2  AAA_19      AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1   0.3   1.4e-47     5e-44       2     175 ..      48     211 ..      47     212 .. 0.96
   2 ?   -2.2   0.0      0.81   2.9e+03      59     104 ..     273     318 ..     250     334 .. 0.54

  Alignments for each domain:
  == domain 1  score: 150.1 bits;  conditional E-value: 1.4e-47
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdi 100
                 +iQ++ai  i++g+dvl++a+ G+GKT+ f+i++lq++   ++ ++p+al+++PtreLa q+ + +  +  ++d++v+++igg++  ++ + l ++++i
  CCD23577.1  48 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRID--TSIKAPQALMLAPTRELALQIQKVVMALAFHMDVKVHACIGGTSFVEDAEGL-RDAQI 143
                 79************************************4..5999************************************************.99*** PP

                 EEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 101 vvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 vvgtpgr++d +++g+++++ +++++lDEad++l++gf+++i +i++ l       + + qv++lSAT+p+dv +
  CCD23577.1 144 VVGTPGRVFDNIQRGRFRTDAIKMFILDEADEMLSSGFKEQIYQIFTML-------PPTTQVVLLSATMPRDVLE 211
                 *************************************************.......45567*********99865 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.81
                 HHHHHHHHHHHHTTTSTSEEEEEET...TSSHHHHHHHHHTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.xxxxxxx RF
        DEAD  59 Laeqtlnnlkkfkkyidlrvlliig...gvaardqlskldng.vdivvgt 104
                  +e+  ++l+        +v++i++   +++++  ++++++g  +i+++t
  CCD23577.1 273 KVEELTQKLTADN----FTVSAIYSdlpQQERDTIMKEFRSGsSRILIST 318
                 3333333332222....445555553334555555555555556666666 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.5   5.4e+03      46      74 ..     200     228 ..     178     232 .. 0.69
   2 !  106.4   0.1   2.8e-34     1e-30       3     111 .]     249     356 ..     247     356 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.5
                 ESTTSTHHHHHHHHHHHHTTSSSEEEESG CS
  Helicase_C  46 lhgelpqnereeileqfnkgesdvLiatd 74 
                 l + +  ++ +e+ ++f ++ +++L+  d
  CCD23577.1 200 LLSATMPRDVLEVTTKFMRNPIRILVKKD 228
                 33445566778888888888888888665 PP

  == domain 2  score: 106.4 bits;  conditional E-value: 2.8e-34
                 HHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   3 leallellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 +e+l++l+  + +  +++if+nt++++e+ ++ l +  +++v +++++lpq+er+ i+++f++g+s++Li+td ++rGid+++v+lVin+dlp+n ++y
  CCD23577.1 249 YECLTDLY-DSISVTQAVIFCNTRRKVEElTQKL-TADNFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENY 345
                 56666665.6778899***********8654444.3448************************************************************ PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                 i+riGR gR+g
  CCD23577.1 346 IHRIGRGGRFG 356
                 *********86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.4e-10   4.9e-07      25     170 ..      61     206 ..      44     207 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 1.4e-10
                 SEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH.... CS
      ResIII  25 krglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseeee 122
                 + +l ++  GtGKT +  +++ +r+ ++ k  ++l+l+p+++l  q ++ ++ ++   + ++   + g +  + ++   +++i+v t  ++  ++    
  CCD23577.1  61 HDVLAQAQSGTGKTGTFsIAALQRIDTSIKAPQALMLAPTRELALQIQKVVMALAFHMDVKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNI---- 155
                 46889999********99******************************9998887777666666666666666666778****************.... PP

                 ....HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS-S CS
      ResIII 123 eeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATpe 170
                  ++ +++ d+++++i DEa  + ++   +++ +i  ++++   ++ l+AT++
  CCD23577.1 156 -QRGRFRTDAIKMFILDEADEMLSSgfkEQIYQIFTMLPPtTQVVLLSATMP 206
                 .999*****************9995332344444555555355667899986 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   3.9e-07    0.0014       5      99 ..      49     175 ..      46     201 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3.9e-07
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKt..talkalreaweaa.ggrviglAptgkaAkvLa..............eelgieastiakllkrlk..... 81 
                  Q++a+  +++++d  +++++  GtGKt  ++++al+++ ++    + ++lApt + A +++              +                +     
  CCD23577.1  49 IQQRAIMPIIEGHD--VLAQAQSGTGKTgtFSIAALQRIDTSIkAPQALMLAPTRELALQIQkvvmalafhmdvkvH----------------Aciggt 129
                 59999999999998..999********6447899999**9999779***************9333322222222220................222333 PP

      AAA_30  82 ............................grarlepgtllivDEagm 99 
                                             gr r ++ +++i DEa  
  CCD23577.1 130 sfvedaeglrdaqivvgtpgrvfdniqrGRFRTDAIKMFILDEADE 175
                 3555555555566666677777777778777888889999999953 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   5.3e-06     0.019       1      68 [.      50     117 ..      50     202 .. 0.65
   2 ?    1.5   0.0     0.095   3.4e+02      40      75 ..     259     291 ..     241     346 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 5.3e-06
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae 68 
                 q++a+   ++ + +l  a  GtGKT +   +    +++  +k+ + l++a+t+  a ++++ + al  +
  CCD23577.1  50 QQRAIMpIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-IKAPQALMLAPTRELALQIQKVVMALAFH 117
                 7888877999999999***********998777777777.7789************9999988444333 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.095
      AAA_19  40 vkpeeillvaftgrAakelrerlaalgaeatTiHrl 75 
                 +++ + ++ + t+r ++el+++l   +a+  T+ ++
  CCD23577.1 259 ISVTQAVIFCNTRRKVEELTQKL---TADNFTVSAI 291
                 456899999***********999...5555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2983.87
//
Query:       CCD23578.1  [L=274]
Description: hypothetical protein NDAI_0B05450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-41  140.5   0.9    7.2e-41  140.2   0.9    1.0  1  Ribosomal_L1  Ribosomal protein L1p/L10e family
  ------ inclusion threshold ------
      0.039   14.0   0.0       0.59   10.2   0.0    2.3  2  SEA           SEA domain


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   0.9     8e-45   7.2e-41       3     203 ..      21     248 ..      19     249 .. 0.87

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 8e-45
                   HHS-S....SS--EEEEEEEESSS-TTSGGG--EEEEE-STS.TSSC..S-EEEEE-HHHHH........HHHHTT..-SEEETCHHHHHHT-HHHH CS
  Ribosomal_L1   3 khakk....kfdesveialnlttkkpkkadqrkpgkipLphp.lgke..vkiclitkdpqaey.....akeakeagriakviglkklkkkyksfeak 87 
                    h+++    ++d+++++++n  +k++  +++ +p++ipL  + ++k+  +ki+litkd    y     +++++++  ++++i++k+lk+++k   + 
    CCD23578.1  21 HHCETdpklSQDKDIQVIINT-GKRMGIPRDYIPRIIPLSSCkMYKPkdLKILLITKDAGGLYrdnlmKDDISNEL-FKEIISVKNLKRRFKG-SKL 114
                   566443322566777777777.9999*****************998888*********999996666666666666.**************86.999 PP

                   HHTCCH-SEEEEEGGGHHHHHHHCHHHH.GGGT-S-ECC...C.T.BTS-............HHHHHHHHCTTEEEEE-TTTSEEEEEEEETT.SSH CS
  Ribosomal_L1  88 rkllkefdlfladdrimpllpklLGkvf.gkrkkmPipv.ltk.gtvked............vkkevekalkstvvvrldkgtclsvkvGkls.fta 168
                   + l+kefdl++ad+r+++llp +LG++f + +kk+P+++ ++k  +v               v++++++++k+t++++ ++++cl+vk+G l+ ++ 
    CCD23578.1 115 KGLYKEFDLVVADYRVHHLLPGVLGNKFfHGNKKTPFMIrMSKaVKV--RrqkmeeecdpvyVRAQLRSICKNTSYIP-NNDNCLNVKIGELGrHSV 208
                   9***************************99999******75553233..2447778899999****************.**************7778 PP

                   HHHHHHHHHHHHHHHHT..STTT...SGSEEEEEEEETTS CS
  Ribosomal_L1 169 eelaeNieavvkalvek..vpkk...wkniksiylkttms 203
                   +e+++Ni ++v ++++k  +p++   +  i s+++kt++s
    CCD23578.1 209 DEMIQNIVDIVMFITDKnkKPQGgvvKGGIVSMFVKTSNS 248
                   *****************989999***************98 PP

>> SEA  SEA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   6.6e-05      0.59      32      73 ..      90     132 ..      85     141 .. 0.87
   2 ?    0.9   0.0     0.052   4.6e+02      23      52 ..     156     185 ..     152     192 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.6e-05
         SEA  32 diee.lldevfqksslkkqyigsevlrlrpskgsvvvdvvlvf 73 
                 di + l++e+++  +lk++++gs++ +l ++ + vv+d+ +++
  CCD23578.1  90 DISNeLFKEIISVKNLKRRFKGSKLKGLYKEFDLVVADYRVHH 132
                 55553799**********************9*********997 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.052
         SEA  23 Saefkslardieelldevfqksslkkqyig 52 
                 S++ k +++++ee+ d+v+ + +l++  ++
  CCD23578.1 156 SKAVKVRRQKMEEECDPVYVRAQLRSICKN 185
                 8899999************99999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2033.48
//
Query:       CCD23579.1  [L=220]
Description: hypothetical protein NDAI_0B05460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-07   29.0   0.1    5.9e-07   28.7   0.1    1.2  1  Phosducin    Phosducin
    0.00075   19.5   0.0     0.0015   18.5   0.0    1.5  1  Thioredoxin  Thioredoxin
  ------ inclusion threshold ------
      0.082   12.7   1.4       0.37   10.6   0.1    2.0  2  DIM1         Mitosis protein DIM1


Domain annotation for each model (and alignments):
>> Phosducin  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.1   9.9e-11   5.9e-07      91     187 ..      29     127 ..       5     177 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 9.9e-11
                 HHHTT----HHHHHHHHHHHHHHHHHHH-----......--SEEE--SHHHHHHHHHSS-TT-EEEEEEE-TTSTTHHHHHHHHHHHHHH-TTSEEEEE CS
   Phosducin  91 elidkdkddeeflrkyrkqrmdemrqklskgpr......fkfvlelesgeqfldtidkeqkitlivvhiyedgvkgtealnssliclaaeyptvkfckv 183
                 el+  d+dde+++ kyr qrm+e+ ++l+   +      ++ ++e++   +   +i+    +  i++h   d    +  ++  l  l+ +y   kf kv
  CCD23579.1  29 ELM-DDLDDENIFSKYREQRMQEISDHLKTVKKnvndngYGDLIEVKNESE---LIKMSTNVPKIIIHFGLDTFAKCRYMDDKLKQLSRKYLNTKFVKV 123
                 555.49******************999976543222333777888876655...56666778889********************************99 PP

                 EHHH CS
   Phosducin 184 kasv 187
                   + 
  CCD23579.1 124 SVTL 127
                 7654 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.5e-07    0.0015      19      88 ..      87     155 ..      70     162 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.5e-07
                  SEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEE CS
  Thioredoxin  19 klvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkky 88 
                   ++++ F  +  ++C+ +  +l++l++++  + k++kv v+ ++ l++k++++ +P ++ + +g e+ ++
   CCD23579.1  87 PKIIIHFGLDTFAKCRYMDDKLKQLSRKYL-NTKFVKVSVTLCPFLVEKLQIKTLPFVVGYIKGLEAGRL 155
                  5789999999999*****************.*************************98877777666655 PP

>> DIM1  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2     0.053   3.1e+02      65     110 ..      26      71 ..      18      77 .. 0.71
   2 ?   10.6   0.1   6.2e-05      0.37      22      52 ..      88     118 ..      70     137 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.053
                 TTSCCCTT-SSSEEEEEETTEEEEEE-SSS--SSB-S----HHHHH CS
        DIM1  65 dfnkmyeledpvtilffyrnkhmkvDfgtgdnnKlnfvledkqeli 110
                  f+++++  d+ +i+  yr+++m+  +   +  K n+  +   +li
  CCD23579.1  26 SFDELMDDLDDENIFSKYREQRMQEISDHLKTVKKNVNDNGYGDLI 71 
                 5888888789999*********986555555555555555555555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 6.2e-05
                 EEEEEEE-TT-HHHHHHHHHHHHHHHHTTTT CS
        DIM1  22 lvviRFGrdedaeClklDelLakiaeklknf 52 
                  ++i FG d+ a+C  +D+ L++ ++k  n 
  CCD23579.1  88 KIIIHFGLDTFAKCRYMDDKLKQLSRKYLNT 118
                 489********************99986543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 1481.35
//
Query:       CCD23580.1  [L=527]
Description: hypothetical protein NDAI_0B05470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.064   13.4   3.7       0.15   12.1   0.4    2.8  2  SAS4      Something about silencing, SAS, complex subunit 4


Domain annotation for each model (and alignments):
>> SAS4  Something about silencing, SAS, complex subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2     0.037   6.7e+02      22      47 ..      34      59 ..      27      74 .. 0.79
   2 ?   12.1   0.4   8.5e-06      0.15      11      62 ..     417     468 ..     412     475 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.037
        SAS4 22 mrniekeraesEadrlerllekLqgq 47
                + +++ +r+ +E d++e  l +L  q
  CCD23580.1 34 LSKDNNSRTRNEDDHIEDTLHQLLTQ 59
                66788999************999433 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 8.5e-06
        SAS4  11 aHkrmerqEkrmrniekeraesEadrlerllekLqgqdwlrvlgkitkindp 62 
                  H+     E++ r++e er  +E ++l++lle+  g+d  ++l+ +  i+ p
  CCD23580.1 417 IHRAHLLLENETRKDENERLCEEIKKLKQLLESKGGDDSGKMLESTEIIQTP 468
                 79999999**************************999999999988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1799  (0.10034); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 3540.47
//
Query:       CCD23581.1  [L=978]
Description: hypothetical protein NDAI_0B05480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.59    9.4  16.4       0.21   10.9  12.9    2.1  2  NOA36     NOA36 protein


Domain annotation for each model (and alignments):
>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       0.4   7.1e+03     223     262 ..     347     386 ..     345     405 .. 0.61
   2 ?   10.9  12.9   1.2e-05      0.21     245     302 ..     532     587 ..     458     591 .. 0.58

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.4
       NOA36 223 tkdlslstrslkfgrqkqadgsddddddeedsdydaylka 262
                  kd s+ +rsl+  r++++++  + +  +++ + ++ l++
  CCD23581.1 347 NKDKSVRIRSLSINRRTNKAHIFNTQIPTNNLNNNNRLAS 386
                 5899999999999998877666665544444444444433 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 1.2e-05
       NOA36 245 ddddddeedsdydaylkalasgddeddegdedddddddeedddeeeddedeeeeeeee 302
                 d  +  + + +++ y+++ +s+ +e ++++  d+d++d+ ddd+ee++e+eee++++e
  CCD23581.1 532 D-SETGSIKDHMQRYTTN-NSNREEFNNQEVVDEDEYDDYDDDDEEEEEEEEENSDDE 587
                 1.1111222223333333.444455555555566666666666666666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (978 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1988  (0.110882); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 6372.22
//
Query:       CCD23582.1  [L=376]
Description: hypothetical protein NDAI_0B05490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-32  110.4   0.0    1.2e-31  110.0   0.0    1.2  1  SIR2      Sir2 family
  ------ inclusion threshold ------
       0.11   12.4   0.1       0.71    9.8   0.0    2.2  2  DUF2024   Domain of unknown function (DUF2024)


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.0   0.0   1.4e-35   1.2e-31       1     175 [.     118     319 ..     118     321 .. 0.90

  Alignments for each domain:
  == domain 1  score: 110.0 bits;  conditional E-value: 1.4e-35
                 -GGGGGGGT---SSS....TTSHHHHSCHHHHSSHHHHHHHHHHHHHHHHHHHHHHHCC..TSS--HHHHHHHHHHHTTCEEEEEES-SSSHHHHTT-S CS
        SIR2   1 GAGiStesGipdfRs....keGlyaklakeelaspealfskkllveevfyniarellae..eaepnaaHkalkklekkgkllrliTQNiDgLekkaGsk 93 
                 GAGiSt++GipdfRs    keGl  + ++++l + +++ s++   e+ f +++++l +   +++p++ H++l+ l +k+k +r++TQNiDgLekka s+
  CCD23582.1 118 GAGISTATGIPDFRSnsssKEGLLMNKETKSLFDYNYVYSNDDSIEK-FNKLMNHLNHLsnTVKPTKFHHFLNDLLEKNKIQRIYTQNIDGLEKKAVSS 215
                 9*************7544579**************************.999988766544499*********************************998 PP

                 ....SEEETTEEEEEEEETTTSBEEECCGGHCHHHCCTT.B-TTTCC................BEEEEE--CTSB-S..HHHHHHHH.HHHH-.SEEEE CS
        SIR2  94 ....kvvelHGslakakcvkcekkldkeelqeeieaekvpecekcgk................llkpdvvfFGealp..dklkklie.kveea.dlllv 168
                     k+v+lHG+++ ++c+ c+ +++++   +  e++ +p+c +c +                  +p +v++ e  p  +++ +  + ++++  dll++
  CCD23582.1 216 nynnKIVQLHGDINFMTCNFCHIRTSYD--PTLFENQLIPDCLYCMEnqmirrnaglrarsigKFRPSIVLYNELHPsgEEIMQFNKiDLKKFpDLLVI 312
                 89999*****************987775..4556788899*****999***************9**********998778888887777666449**** PP

                 ES--STS CS
        SIR2 169 iGtSlkV 175
                 +Gt lk+
  CCD23582.1 313 VGTTLKI 319
                 ****986 PP

>> DUF2024  Domain of unknown function (DUF2024)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.2   1.8e+03      41      62 ..      91     112 ..      79     121 .. 0.71
   2 ?    9.8   0.0     8e-05      0.71      36      63 ..     214     241 ..     200     251 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.2
                 HHHT---S---TTTEEEEEEEE CS
     DUF2024  41 kskgeeeakvtskeCkfCHsee 62 
                 ksk  +e++++  +C+f  s++
  CCD23582.1  91 KSKKDNEKNLEFLKCSFKYSNK 112
                 4555667778888999987766 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 8e-05
                 HHHHHHHHT---S---TTTEEEEEEEE- CS
     DUF2024  36 akeyLkskgeeeakvtskeCkfCHseea 63 
                 + +y +++ + + +++  +C+fCH+ + 
  CCD23582.1 214 SSNYNNKIVQLHGDINFMTCNFCHIRTS 241
                 56788888999999**********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2714.01
//
Query:       CCD23583.1  [L=593]
Description: hypothetical protein NDAI_0B05500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-07   29.2   5.6    1.3e-06   28.3   5.6    1.5  1  zf_CCCH_4       Zinc finger domain
    8.1e-05   22.4   2.8    0.00015   21.6   2.8    1.4  1  zf-CCCH         Zinc finger C-x8-C-x5-C-x3-H type (and simila
    0.00019   22.1   0.3    0.00043   21.0   0.3    1.5  1  Torus           Torus domain
    0.00056   20.7  26.7    0.00056   20.7  26.7    5.2  5  Nucleoporin_FG  Nucleoporin FG repeat region
    0.00057   19.6   1.0     0.0011   18.7   1.0    1.5  1  zf-CCCH_4       CCCH-type zinc finger
  ------ inclusion threshold ------
      0.029   14.8   2.7      0.058   13.9   2.7    1.5  1  zf-CCCH_2       RNA-binding, Nab2-type zinc finger
       0.12   12.6   0.3       0.32   11.2   0.3    1.6  1  zf-CCCH_3       Zinc-finger containing family


Domain annotation for each model (and alignments):
>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   5.6   4.9e-10   1.3e-06       1      19 []      17      35 ..      17      35 .. 1.00

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 4.9e-10
   zf_CCCH_4  1 CkfflqGtCkkGdkCrFaH 19
                Ckff+qG+C kG++C++aH
  CCD23583.1 17 CKFFQQGKCLKGSACKYAH 35
                ******************* PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   2.8   5.8e-08   0.00015       3      26 ..      14      36 ..      13      37 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 5.8e-08
                CHCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH  3 telCrffmrtGyCkyGdrCkFaHg 26
                + +C+ff++ G C  G++Ck+aH+
  CCD23583.1 14 RTPCKFFQQ-GKCLKGSACKYAHV 36
                689******.*************7 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.3   1.7e-07   0.00043      65      98 ..       9      42 ..       3      52 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.7e-07
                HHSTT--B-HHHHHT--SSGGG-SSB-S---SS- CS
       Torus 65 dkekesyfClfFarGlCakGkkCeylHrlPteed 98
                +++++++ C fF +G C kG+ C+y H   ++++
  CCD23583.1  9 NNNRNRTPCKFFQQGKCLKGSACKYAHVYTNANN 42
                35667899*******************8776665 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.0       2.5   6.3e+03      42      48 ..      16      23 ..       1      55 [. 0.40
   2 ?    3.9  29.9     0.038        96       6      84 ..     197     279 ..     186     289 .. 0.77
   3 ?   -6.8  39.8         7   1.8e+04      10      91 .]     288     362 ..     254     366 .. 0.42
   4 !   10.8  33.7   0.00027      0.68       2      91 .]     365     450 ..     364     450 .. 0.82
   5 !   20.7  26.7   2.2e-07   0.00056       3      85 ..     449     533 ..     447     543 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.5
  Nucleoporin_FG 42 g.glfgat 48
                      + f + 
      CCD23583.1 16 PcKFFQQG 23
                    12344443 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.038
  Nucleoporin_FG   6 aatstsgglFGststt.atstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqq.....t 84 
                      at+t++++FGst+++ + ++ g+FG s+++ a++ ++   g+++  +a+gg+FG+++  t++  t++ FG++   +++     t
      CCD23583.1 197 MATPTNTSTFGSTNNAfSITSPGTFG-SAPQGASPFASVPQGSSALGSATGGAFGKPAFGTTGV-TNSAFGANPFMSNTnatsgT 279
                     57899***********99999*****.667777777777788889999**********999886.99999977655544322330 PP

  == domain 3  score: -6.8 bits;  conditional E-value: 7
  Nucleoporin_FG  10 tsgglFGststtatstgglFGasstatatasggglfgat..sqtaasgglFGstnattqtta...tgglFGstaataqq....ttsgglFG 91 
                      ++ +FG+t+t+++ ++                ++fg++  + t++++g+FG++  + +  +   +++ FGst   +++    ++s g FG
      CCD23583.1 288 FGKPAFGATNTSSAFGN----------------SAFGSSiaAPTSKTSGAFGKPGFSGTIGSgnaGTSTFGSTGFGSTPaapvAASAGAFG 362
                     12233333333333333................4444445555555555555544444333333344445544443333334455555554 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00027
  Nucleoporin_FG   2 lFGaaatstsgglFGststt.atstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqq.ttsgglFG 91 
                     +FGa+ +++++g+FGs+ t+ a+++gg+FG  ++a  ++    +fg+++   +s + FGst +t+++++t++ FG+ ++     tt+ + FG
      CCD23583.1 365 GFGASLNQQGTGAFGSAGTNtASTAGGAFG--KPAFGKP----AFGSSAFGGTSASPFGSTGQTSTAANTSSPFGKVNQGMPGaTTTMSPFG 450
                     799999*************999999*****..4444444....455555555899***********999******88887766788888998 PP

  == domain 5  score: 20.7 bits;  conditional E-value: 2.2e-07
  Nucleoporin_FG   3 FG.....aaatstsgglFGststt.atstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqqtt 85 
                     FG     +a+t+t++++FGs +++ +++t+++FG+s++at ++++  +fg+   +a++++ FG +n+t ++   +++FG ++++++ ++
      CCD23583.1 449 FGkiagtPATTTTTASPFGSVNNNaTQNTTSVFGTSQPATGQTTAFPVFGN---AANKSSPFGLPNNTGNAP-ASNVFGFNTNSTSVPA 533
                     676666889999*********999999*******999999999999****9...8999**********9988.99****8888875444 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.0   4.4e-07    0.0011       2      21 ..      16      35 ..      15      36 .. 0.96

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 4.4e-07
   zf-CCCH_4  2 lCpyfakGsCrfGdnCrFsH 21
                +C++f++G+C  G+ C+++H
  CCD23583.1 16 PCKFFQQGKCLKGSACKYAH 35
                9******************* PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.7   2.3e-05     0.058       1      17 [.      16      35 ..      16      35 .. 0.99

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.3e-05
   zf-CCCH_2  1 pCrffpn..C.tnpkCpFaH 17
                pC+ff    C ++  C++aH
  CCD23583.1 16 PCKFFQQgkClKGSACKYAH 35
                9******************* PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00013      0.32      34      59 ..      14      40 ..      10      48 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
   zf-CCCH_3 34 etvctlWqegrclr.evckfrhmeidk 59
                 t c+++q+g+cl+ + ck+ h+  + 
  CCD23583.1 14 RTPCKFFQQGKCLKgSACKYAHVYTNA 40
                466777777777763567777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4347.41
//
Query:       CCD23584.1  [L=390]
Description: hypothetical protein NDAI_0B05510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-79  267.5   0.0    1.6e-79  267.1   0.0    1.1  1  Glycos_transf_3  Glycosyl transferase family, a/b domain
    5.9e-14   51.7   0.1    1.1e-13   50.7   0.1    1.5  1  Glycos_trans_3N  Glycosyl transferase family, helical bundle 


Domain annotation for each model (and alignments):
>> Glycos_transf_3  Glycosyl transferase family, a/b domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.1   0.0   1.8e-83   1.6e-79       2     252 ..     109     376 ..     108     377 .. 0.96

  Alignments for each domain:
  == domain 1  score: 267.1 bits;  conditional E-value: 1.8e-83
                      TTBEEEEESS-SSSTHHHHHHHHHHHHHHT.T-BEEEEE-STCTTCS-HHHHHCTST--S.T--HHHHHHHHHHHSEEEEEHHSSSSHHHHHHH CS
  Glycos_transf_3   2 kdlvDivgTGGdgantfNiStaaaivvAaa.GvkvakhgnrsvssksGsaDvLealgvnl.eltpeeveklleevgvgflfapeyhkamkhvap 93 
                      + ++DivgTGGdg+ntfN+St+aaiv++++ G+k++khg+++++s+sG+ D+++ lg++  ++t+++v+ l++++++ fl+ap +h +m  va 
       CCD23584.1 109 ETILDIVGTGGDGQNTFNVSTSAAIVASGIpGIKICKHGGKASTSNSGAGDLIGILGCDSsKVTAKTVNLLWNDNQFLFLLAPYFHDGMGRVAL 202
                      5799******************************************************99899******************************* PP

                      HHHHHTT.-SSHHHCHHHHH.T..SEEEEHHHHHHHHTCHSEEEEEE.EESTTSSCCS.TSHHHHHHHHHHHHHHHHTT.......EEEEEEEE CS
  Glycos_transf_3  94 vrrelgirTvfnlLGPLinp.arvkkqllgvyskelaeklaevlkel.gveralvvhg.dGldevsllakttvaelkdg.......eiteytle 177
                      +r+ lgi+T+fn+LGPL++p  +++k++lgvysk+la ++a++++ + + ++++vv+g +Gldevs+++kttv++++ +       +i+++ le
       CCD23584.1 203 IRKLLGIPTIFNVLGPLLHPvKHIHKRVLGVYSKDLALEYAKAAALVyPDSETFVVWGnVGLDEVSPIGKTTVWHVNSDknkkergHIESFDLE 296
                      ********************8899**********************98999*************************965577777799****** PP

                      EGSSTSSSEEESHHHHSSHHHHHHHHT.THHTSCHHHHH....HHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHTSHH CS
  Glycos_transf_3 178 pedfglkraelealeggepkenaeilk.avlegkksaak....rdlvllnagaalvlagkadslkegvakaeevidsGkA 252
                      p++fgl ++ l+++++ +p+ena+il+ ++l+gk+s  +    +d++lln++++++l++ + ++k+gv +a ++i+sG+ 
       CCD23584.1 297 PSMFGLMEHPLDQCASLGPRENARILTeEILSGKYSYGDnhpiYDYILLNTAVLYCLSEGHRNWKQGVIEADKSIQSGAS 376
                      **************************9899****998878899***********************************86 PP

>> Glycos_trans_3N  Glycosyl transferase family, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.1   1.3e-17   1.1e-13       2      62 ..       8      88 ..       7      89 .. 0.93

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 1.3e-17
                     HHHHHHHTT..---HHHHHHHHHHHHTTSS-H.................HHHHHHHHHHHHH-..--HHHHHHHHHHHHHH CS
  Glycos_trans_3N  2 diikklrdg.eeLtaeeirfaihgilkgevtd.................aqiaAfLmAlrlkG..etaeEiaalaeAmres 62
                     ++++kl+   +++ta+++ +ai+ i++  ++                  ++ia+fL++lr++G  +tae+ia++a+A++++
       CCD23584.1  8 KYTRKLLVSpPTFTANDLFNAITLIMELLASTnethpdgevdlefmstyIKIASFLSSLRTTGldHTAEYIAQAAKAVLQF 88
                     79*******77****************9988888888888889999999*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       418  (0.0233142); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2815.28
//
Query:       CCD23585.1  [L=1009]
Description: hypothetical protein NDAI_0B05520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-27   94.5   4.1      2e-27   94.5   4.1    3.5  4  Spc110_C        Spindle pole body component 110 C-terminal do
    1.5e-05   24.0  25.2    1.5e-05   24.0  25.2    6.7  7  Spc7            Spc7 kinetochore protein
     0.0021   17.4  20.4     0.0021   17.4  20.4    6.7  6  GAS             Growth-arrest specific micro-tubule binding
     0.0033   17.6  13.3     0.0033   17.6  13.3    8.4  6  Uds1            Up-regulated During Septation
  ------ inclusion threshold ------
      0.035   14.7   0.0      0.035   14.7   0.0    3.9  4  PACT_coil_coil  Pericentrin-AKAP-450 domain of centrosomal ta
       0.63    9.6 134.2       0.24   10.9  11.3    5.8  4  Filament        Intermediate filament protein
        2.4    8.4 108.7        2.1    8.6   8.2   10.3  8  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
        8.4    5.6  91.2        2.4    7.4  17.1    6.1  5  DUF4407         Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> Spc110_C  Spindle pole body component 110 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       2.4   5.3e+03      32      43 ..     406     417 ..     393     418 .. 0.57
   2 ?   -3.4   0.1       3.4   7.7e+03      34      44 ..     545     555 ..     538     558 .. 0.74
   3 ?   -2.2   0.1       1.4   3.2e+03      33      42 ..     892     901 ..     884     904 .. 0.82
   4 !   94.5   4.1   8.9e-31     2e-27       2      52 .]     959    1009 .]     958    1009 .] 0.98

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
    Spc110_C  32 deqrlrYLqrKi 43 
                  + +++ L+ Ki
  CCD23585.1 406 YKNKINELESKI 417
                 345555566665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.4
    Spc110_C  34 qrlrYLqrKia 44 
                  ++  Lq+Ki+
  CCD23585.1 545 EQISRLQDKIE 555
                 46888999995 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.4
    Spc110_C  33 eqrlrYLqrK 42 
                 + +l+YL+ K
  CCD23585.1 892 NDKLNYLKAK 901
                 569****998 PP

  == domain 4  score: 94.5 bits;  conditional E-value: 8.9e-31
    Spc110_C    2 rrrrrlkFKTVALlVlacvRmkqvalkrrwdeqrlrYLqrKialdedrisW 52  
                  +++++lkFK+VALlVlac+Rmk+va+k+rwd+qrlrYL+rKial++d++sW
  CCD23585.1  959 DNQKQLKFKSVALLVLACIRMKRVANKHRWDRQRLRYLERKIALNDDTQSW 1009
                  689************************************************ PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2  12.2      0.68   1.5e+03     160     281 ..     148     272 ..     129     276 .. 0.74
   2 !   24.0  25.2   6.8e-09   1.5e-05     139     281 ..     279     423 ..     273     426 .. 0.95
   3 ?    0.7  15.3     0.086   1.9e+02     171     277 ..     412     514 ..     411     517 .. 0.40
   4 !    8.6  26.0   0.00033      0.75     142     262 ..     506     629 ..     498     642 .. 0.82
   5 !    3.8  11.2    0.0099        22     211     282 ..     606     678 ..     595     680 .. 0.86
   6 ?   -0.8  29.7      0.24   5.3e+02     142     292 ..     658     822 ..     650     833 .. 0.62
   7 ?    0.4   6.4      0.11   2.4e+02     193     299 ..     774     882 ..     765     891 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.68
        Spc7 160 kqeeeldellpeleeekaeleeeleklqe.....aaeelesid.keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiae 252
                 k  ++ +e ++ l +e  +l+ ++++l +       + l+++d  +e+ + +++  +l++e++ +k ++++l+ + e+ +e+  +++++k   e+++ +
  CCD23585.1 148 KPLKQQQEEVEMLIKENHTLKIRIRTLVNffngfDLNTLKNMDiIDEIGKWKQKYINLNTEYNTLKLKYDDLNLNSEKHSEAEVKIDKKK---EAKLVK 243
                 445555666666666666666666666665555767888999999999999999999999999999999999988888877766664444...345666 PP

        Spc7 253 aervleeckgwsesevsrlkeevkaleel 281
                 + +vl+   + ++  +++l++++k+l+e+
  CCD23585.1 244 EHKVLQDSFNQTRLALDTLQNQFKKLQEE 272
                 78899999999999999999999999986 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 6.8e-09
        Spc7 139 gLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesid..keeLeelreelaelkaeieekkkelaelqeqleeleek 235
                 ++++  +++ e+l++  ++L++  +e d+l ++ +++  +lee+l++l++  ++ ++id  k++L e ++ l+++k+e e +++++ +l++ql e+e +
  CCD23585.1 279 EIRNLTTQHHEELDTKLSQLDRIIAEKDDLINKDTAKIHKLEEQLNSLNNDTTSQSTIDslKKQLIEEKSMLERVKTENETLENKIHDLKSQLRESEIE 377
                 6777888999****************************************99999999988999*********************************** PP

        Spc7 236 ieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleel 281
                 +++l+e++ ++e+ei+ ++++ e+  +  ++ +++l+++ k+l  +
  CCD23585.1 378 LKALSEKCGRYETEIRDHKSTSEKSNNYYKNKINELESKIKNLHLQ 423
                 *****************************************99765 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.086
        Spc7 171 eleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevs 269
                 ele++ ++l+ +le+l+++++el++       +  +el+ +k+++++  +++++l+e   +l+ ++++l++  s+l  ++++     ee+k+  e +v+
  CCD23585.1 412 ELESKIKNLHLQLENLNTERQELQDALLGHDIAGSDELRGIKEDMQNELEKIKQLEETNHTLQINFDDLQKDNSKLTRNLKN----SEENKKTLEIQVQ 506
                 4555555566666666666666555332222233344444444444444444444444444444444444444444444442....2333333333444 PP

        Spc7 270 rlkeevka 277
                 +++++ ++
  CCD23585.1 507 SMQQTIDN 514
                 44444443 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00033
        Spc7 142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqlee..leekiee 238
                 +++++++++le+ + +L+++ ++l++ +++l+e+  + +e++ +lq++ e+l+s+ keeL+ + eel+   +e+ e + ++++lq+ql e  ++++ ++
  CCD23585.1 506 QSMQQTIDNLEKASIQLTSDLKKLTREVHDLNEKDVDSQEQISRLQDKIEKLKSVHKEELKIVNEELDGKRKELIETNFQIKQLQNQLFEnvKNSTTSD 604
                 578999999999999999999999999999999999999999999999999999999999999999999999999999999999999966224455556 PP

        Spc7 239 lkeq.kseleeeiaeaervleeckg 262
                 ++e+ ++e +++i+  +r l   ++
  CCD23585.1 605 INEKvIKEKQDQIEDLQRKLADLRD 629
                 6555367888888888887766665 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.0099
        Spc7 211 lkaeieekkkelaelqeqleeleekiee.lkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleelt 282
                 +++ i+ek++++++lq++l++l+++i +  +++ +++  +i+e e  + e+ g  +++v+ lk+e  +l++++
  CCD23585.1 606 NEKVIKEKQDQIEDLQRKLADLRDAIRTdQNKNLKKFDLRIKETEMKYTEELGKLKEDVRLLKNERAKLKNQL 678
                 45668999***************9997615566899*****************************99999986 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 0.24
        Spc7 142 egleenlegleedkelLekqeeeldellpeleeeka.eleeeleklqeaaeeles...idkeeLeelreelaelkaeieekkkelaelqeqleeleeki 236
                  +l+e +  l++++++L++q e ++e + ++e++++ el+e + k +++++e+++    + ++  ++r+e+ e  +e +++ ++l+ lq+q+ + e +i
  CCD23585.1 658 GKLKEDVRLLKNERAKLKNQLETIKESKVNMETQHDrELNEWISKFNSMSKEHNNlinRQDNKRDSYRNEIMETLNENKRLLAQLEALQNQRSDMEIEI 756
                 468888888999999999999999888888877776667776666666555555543245666777888888888888888888888888888888888 PP

        Spc7 237 eelkeqkseleeeiae....aervlee....ckgwsese..vsrlkeevkaleeltgwkivslsgs 292
                 ++l+++++ +++ +++     +++++e    +++ ++++   +++ +++++++e+++ +i +l+++
  CCD23585.1 757 TKLSKSRDAYKDTLKNtlsnLDSITKEfseyKRRNKNNDekNESMSDRYQNMQEKLMRRINQLEDD 822
                 777777666655544311112333222111122222222113566777777777777777777655 PP

  == domain 7  score: 0.4 bits;  conditional E-value: 0.11
        Spc7 193 lesid..keeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltgwkivsl 289
                 l+++d   +e  e++++ ++++++ e+ +++++++qe+l +  +++e+ +   ++  ++   + r ++  +++s+  vs+++++ +  + ++++++ + 
  CCD23585.1 774 LSNLDsiTKEFSEYKRRNKNNDEKNESMSDRYQNMQEKLMRRINQLEDDNLLLERRLQNQPLSSRGTNDAERFSNASVSKYQDNIDYYKLKYNMEVQQN 872
                 333333345778888888888888888888888888888888888888888888877777778888888888888888888888888888888888877 PP

        Spc7 290 sgstleltyr 299
                 ++  l++ y 
  CCD23585.1 873 NDMRLQIDYL 882
                 7777777665 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   2.1     0.015        33      40      76 ..     127     163 ..     121     176 .. 0.80
   2 ?    3.7  18.8     0.015        34      81     198 ..     196     310 ..     184     312 .. 0.92
   3 !   17.4  20.4   9.5e-07    0.0021      26     127 ..     334     436 ..     328     439 .. 0.93
   4 !    9.2  36.7   0.00032      0.72      34     200 .]     448     620 ..     446     620 .. 0.85
   5 ?    0.9  14.2      0.11   2.5e+02      34     114 ..     635     716 ..     626     719 .. 0.88
   6 !    6.9  23.1    0.0016       3.5      35     153 ..     714     832 ..     708     836 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.015
         GAS  40 kkeernekelseisqenkrlkepLkkaeeeveeLrkq 76 
                 +k+++ +k+l    ++n   ++pLk+++eeve L k+
  CCD23585.1 127 NKDDEYKKNLMPELSDNIISSKPLKQQQEEVEMLIKE 163
                 56666777777777789999**************887 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.015
         GAS  81 ekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqevqqktglknllLekklkalqeelEkkeaqleevlaaanldpaal 179
                  k kq++ nl++++++l+ ++ dl +++e  ++   k+ k++++   k  +++q+ + +t l    L+++ k+lqee  k++ +++ + ++++ +   l
  CCD23585.1 196 GKWKQKYINLNTEYNTLKLKYDDLNLNSEKHSEAEVKIDKKKEAKLVKEHKVLQDSFNQTRLALDTLQNQFKKLQEEKAKADHEIRNLTTQHHEE---L 291
                 5779999999999****************9999999*****************************************************998887...7 PP

         GAS 180 savsekleevlesKnqeIk 198
                 ++  ++l++++++K++ I+
  CCD23585.1 292 DTKLSQLDRIIAEKDDLIN 310
                 7788899999999999997 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 9.5e-07
         GAS  26 elIkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarl.kelekelkdlkwehevleqrfekvekerd 123
                 ++I+slK+++ e k   er + e + ++++  +lk +L++ e e++ L ++  +ye +  ++k++ ++  +  ++++++l+ + ++l+ ++e++  er+
  CCD23585.1 334 STIDSLKKQLIEEKSMLERVKTENETLENKIHDLKSQLRESEIELKALSEKCGRYETEIRDHKSTSEKSnNYYKNKINELESKIKNLHLQLENLNTERQ 432
                 68***********************************************************999877751557889*********************** PP

         GAS 124 elyk 127
                 el++
  CCD23585.1 433 ELQD 436
                 **97 PP

  == domain 4  score: 9.2 bits;  conditional E-value: 0.00032
         GAS  34 eieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaa 132
                 e+  +k+  +    +++++++ n  l+ +   +++++ +L ++lkn e+ k+    l+ +++++++ + +l+  + +l   ++k+ +e  +l++k  ++
  CCD23585.1 448 ELRGIKEDMQNELEKIKQLEETNHTLQINFDDLQKDNSKLTRNLKNSEENKKT---LEIQVQSMQQTIDNLEKASIQLTSDLKKLTREVHDLNEKDVDS 543
                 55667777778888899999*****************************9985...56899**********************************9988 PP

         GAS 133 ...iqevqqktglknllLekklkalqeelEkkeaqleev.laaanldpaalsavsekl.....eevlesKnqeIkdL 200
                    i  +q k++  + + +  lk ++eel+ k ++l e+  + ++l+ +  ++v+++      e+v+++K+++I+dL
  CCD23585.1 544 qeqISRLQDKIEKLKSVHKEELKIVNEELDGKRKELIETnFQIKQLQNQLFENVKNSTtsdinEKVIKEKQDQIEDL 620
                 7779999*************************9998775355566666666666554322223799********998 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.11
         GAS  34 eieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlk.arlkelekelkdlkwehevleqr 114
                 + ++lkk + r +    ++++e  +lke ++ +++e+++L++ql++ ++ k+ ++ ++ ++l+e  +++++++ eh++l  r
  CCD23585.1 635 QNKNLKKFDLRIKETEMKYTEELGKLKEDVRLLKNERAKLKNQLETIKESKVNMETQHdRELNEWISKFNSMSKEHNNLINR 716
                 678899999999999999***********************************99776256999999999999999998665 PP

  == domain 6  score: 6.9 bits;  conditional E-value: 0.0016
         GAS  35 ieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqs....lknlkarlkelekelkdlkwehevleqrfekvekerdelykkf 129
                 i++ ++k ++ ++e+ e+ +enkrl  +L+++++++  ++ ++ + +k + +    lkn+ ++l + +ke+++ k  +++  ++ e++++ ++++++k 
  CCD23585.1 714 INRQDNKRDSYRNEIMETLNENKRLLAQLEALQNQRSDMEIEITKLSKSRDAykdtLKNTLSNLDSITKEFSEYKRRNKNNDEKNESMSDRYQNMQEKL 812
                 66677889999**************************99998888887765511116666667777777777777777777777777777777777777 PP

         GAS 130 eaaiqevqqktglknllLekklka 153
                  + i+++       nllLe++l++
  CCD23585.1 813 MRRINQLE----DDNLLLERRLQN 832
                 77776655....579******997 PP

>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.2     0.028        62      19      40 ..     153     174 ..     151     177 .. 0.91
   2 ?   -4.5  10.5         8   1.8e+04      25      93 ..     240     304 ..     192     332 .. 0.48
   3 !   17.6  13.3   1.5e-06    0.0033      17     122 ..     330     441 ..     323     445 .. 0.77
   4 ?  -10.2  21.4         8   1.8e+04      25     117 ..     479     591 ..     448     640 .. 0.57
   5 ?  -11.7  19.6         8   1.8e+04      19      90 ..     653     720 ..     570     749 .. 0.59
   6 ?   -3.6  10.9       5.1   1.1e+04      25     112 ..     737     830 ..     720     834 .. 0.51

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.028
        Uds1  19 sleeVeelkkelkaLeerleal 40 
                 ++eeVe l ke ++L+ r+ +l
  CCD23585.1 153 QQEEVEMLIKENHTLKIRIRTL 174
                 68*****************987 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 8
        Uds1  25 elkkelkaLeerlealrkkLaletklrdaarsLsrlyssskksak..ssaarsnskssreslakaeeelae 93 
                 +l ke+k+L++  +++r  L     l++  ++L++ +   +k ++  ++ + +++++ +++l + +  +ae
  CCD23585.1 240 KLVKEHKVLQDSFNQTRLAL---DTLQNQFKKLQEEK---AKADHeiRNLTTQHHEELDTKLSQLDRIIAE 304
                 34455555555555444442...22333333333333...1111122222222222222222222333333 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 1.5e-06
        Uds1  17 iLsleeVeelkkel...kaLeerlealrkkLaletklrdaarsLsrlyssskksak.....ssaarsnskssreslakaeeelaeserkvdelaselek 107
                 + s+  +++lkk+l   k++ er+++ +++  le+k+ d   +L++  ++ k+ ++     +   r+++++s++s++  +++++e+e+k+++l+ +le+
  CCD23585.1 330 TTSQSTIDSLKKQLieeKSMLERVKTENET--LENKIHDLKSQLRESEIELKALSEkcgryETEIRDHKSTSEKSNNYYKNKINELESKIKNLHLQLEN 426
                 668888999999763336677777777777..7777777777777777666655446776644455666777789999********************* PP

        Uds1 108 leeraaevrrrLLeH 122
                 l+++++e++  LL H
  CCD23585.1 427 LNTERQELQDALLGH 441
                 **************9 PP

  == domain 4  score: -10.2 bits;  conditional E-value: 8
        Uds1  25 elkkelkaLeerlealrkk.LaletklrdaarsLsrlyssskksak......................ssaarsnskssreslakaeeelaeserkvde 100
                 +l+k+ ++L++ l++++++  +le+++++  +++ +l  +s    +                      +++ ++ + ++++ +   +eel+  ++  d 
  CCD23585.1 479 DLQKDNSKLTRNLKNSEENkKTLEIQVQSMQQTIDNLEKASI---QltsdlkkltrevhdlnekdvdsQEQISRLQDKIEKLKSVHKEELKIVNEELDG 574
                 555666666665555443202334333333333333331111...012233222222222222222221111222222333333344444444444444 PP

        Uds1 101 laselekleeraaevrr 117
                   +el++ + +  ++++
  CCD23585.1 575 KRKELIETNFQIKQLQN 591
                 44444444444444444 PP

  == domain 5  score: -11.7 bits;  conditional E-value: 8
        Uds1  19 sleeVeelkkelkaLeerlealrkkLaletklrdaarsLsrlyssskksakssaarsnskssreslakaeee 90 
                  +ee+ +lk +++ L++   +l+++      ++++ +++++ + +++++   s+ +s sk++++  ++++++
  CCD23585.1 653 YTEELGKLKEDVRLLKNERAKLKNQ---LETIKESKVNMETQHDRELNE-WISKFNSMSKEHNNLINRQDNK 720
                 3444445555555555444444444...223444444444444333333.2222333333333334444444 PP

  == domain 6  score: -3.6 bits;  conditional E-value: 5.1
        Uds1  25 elkkelkaLeerlealrkkLaletklrdaarsLsrlyssskksak......ssaarsnskssreslakaeeelaeserkvdelaselekleera 112
                  l  +l+aL+++ + ++ +++  +k rda +   +   s++ s +      + ++++n ++++  +++ ++  +++ r++++l+++   le+r+
  CCD23585.1 737 RLLAQLEALQNQRSDMEIEITKLSKSRDAYKDTLKNTLSNLDSITkefseyKRRNKNNDEKNESMSDRYQNMQEKLMRRINQLEDDNLLLERRL 830
                 4444555555666666666666666677755433333344444224443332222233333333355555555666777777777777777666 PP

>> PACT_coil_coil  Pericentrin-AKAP-450 domain of centrosomal targeting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4       2.7   5.9e+03      19      39 ..     501     517 ..     452     561 .. 0.63
   2 ?   -3.4   0.1       6.9   1.5e+04      24      45 ..     668     689 ..     662     720 .. 0.63
   3 ?   -2.1   0.2       2.7     6e+03      26      44 ..     766     784 ..     733     816 .. 0.59
   4 ?   14.7   0.0   1.6e-05     0.035      50      82 ..     953     985 ..     868     986 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.7
  PACT_coil_coil  19 Lllqlevfqacnkadlrllar 39 
                     L+ q++    + ++++  l++
      CCD23585.1 501 LEIQVQ----SMQQTIDNLEK 517
                     333333....33333333333 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.9
  PACT_coil_coil  24 evfqacnkadlrllarigvelk 45 
                     +   a  k++l+ +++ +v+++
      CCD23585.1 668 KNERAKLKNQLETIKESKVNME 689
                     4555556667777777666662 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.7
  PACT_coil_coil  26 fqacnkadlrllarigvel 44 
                     ++++ k++l+ l  i +e 
      CCD23585.1 766 YKDTLKNTLSNLDSITKEF 784
                     3334455555555555555 PP

  == domain 4  score: 14.7 bits;  conditional E-value: 1.6e-05
  PACT_coil_coil  50 skeeekrrkprrklrsaatavraiaRmrvlark 82 
                     +  +++ ++++ k++s+a++v+a +Rm+++a+k
      CCD23585.1 953 RFFDRRDNQKQLKFKSVALLVLACIRMKRVANK 985
                     455677889999*****************9986 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  45.9   0.00035      0.78      20     290 ..     157     436 ..     148     444 .. 0.71
   2 ?   10.9  11.3   0.00011      0.24     208     288 ..     453     536 ..     446     537 .. 0.65
   3 ?    5.9  43.8    0.0036         8      42     274 ..     551     784 ..     545     796 .. 0.87
   4 ?   -2.1   6.8      0.97   2.2e+03      18      77 ..     814     881 ..     784     910 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00035
                 XXXXXXXXXXXXXXXXXXXXXX.XXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXX... CS
    Filament  20 VraLEqenkeLeakieeleekk.saevsklkel.yekeleelrkqldeltkerarlqleldnlreeledlrkkyeke....lnkreevEaelkalr... 109
                 V +L +en++L+++i+ l +       + lk++   +e+ + +++  +l++e +       +l+ +++dl+   ek     ++  ++ Ea+l++     
  CCD23585.1 157 VEMLIKENHTLKIRIRTLVNFFnGFDLNTLKNMdIIDEIGKWKQKYINLNTEYN-------TLKLKYDDLNLNSEKHseaeVKIDKKKEAKLVKEHkvl 248
                 555666666666666666555213333333333233444444444444555555.......55555555444443333333333333333443333000 PP

                 .XXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX CS
    Filament 110 .kdldeatlarvdLekkvesLke.......elaflkkvheeEvkelqkqvseqvlvevdaarkldLteilkeiraqyeelaeknreeae.ewyksklee 199
                    ++++ la   L+++ ++L+e       e++ l + h eE+++  +q+ ++++ e d+  + d ++ ++ + +q ++l ++ ++++  +  k++l e
  CCD23585.1 249 qDSFNQTRLALDTLQNQFKKLQEekakadhEIRNLTTQHHEELDTKLSQL-DRIIAEKDDLINKDTAK-IHKLEEQLNSLNNDTTSQSTiDSLKKQLIE 345
                 0444445566666777777777633333336889999999***9999999.999*********99776.588999**9999887766542678899999 PP

                 XXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 200 lqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLLd 290
                  ++  e+ + + ++ ++ i++l+ q+ + eiel++l +++  +e+++++ + + e+  + +++k++ele++++++  +++  ++e qeL d
  CCD23585.1 346 EKSMLERVKTENETLENKIHDLKSQLRESEIELKALSEKCGRYETEIRDHKSTSEKSNNYYKNKINELESKIKNLHLQLENLNTERQELQD 436
                 9999999999999***************************************************************************976 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
                 XXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 208 sealrsakeeitelrrqiqsleieleslkkqkasleaqlaelee...rleaeleklqeklseleeelaeireemarqlreYqeL 288
                 +e++++  e i++l  +  +l+i+ ++l+k +++l ++l++ ee   +le +++++q+++++le++  ++ +++++  re ++L
  CCD23585.1 453 KEDMQNELEKIKQLEETNHTLQINFDDLQKDNSKLTRNLKNSEEnkkTLEIQVQSMQQTIDNLEKASIQLTSDLKKLTREVHDL 536
                 466677777777777777777777777777777777776544431115566777777777777777777777777777766554 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0036
                 XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX CS
    Filament  42 saevsklkelyekeleelrkqldeltkerarlqleldnlreel.edlrkkyekelnkr..eevEaelkalrkdldea.tlarvdLekkvesLkeelafl 136
                 + +++klk++ ++el+ + ++ld   ke   ++ ++++l+++l e+++++  +++n++  +e  +++++l+++l ++    r+d +k +++    ++  
  CCD23585.1 551 QDKIEKLKSVHKEELKIVNEELDGKRKELIETNFQIKQLQNQLfENVKNSTTSDINEKviKEKQDQIEDLQRKLADLrDAIRTDQNKNLKKFDLRIKET 649
                 4568899********************************9875499***********933355568****99998862689****************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHH CS
    Filament 137 kkvheeEvkelqkqvseqvlvevdaarkldLteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleielesl 235
                    + eE+ +l++ v   +l+  + a+  +  e++ke + + e++ +++ +e  + ++s  +e ++ +++++++  s ++ei+e+  + ++l ++le+l
  CCD23585.1 650 EMKYTEELGKLKEDV---RLLKNERAKLKNQLETIKESKVNMETQHDRELNEWISKFNSMSKEHNNLINRQDNKRDSYRNEIMETLNENKRLLAQLEAL 745
                 **************9...66666666666666789999************************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 236 kkqkasleaqlaeleerleaeleklqeklseleeelaei 274
                 ++q++ +e +++ l +  +a  ++l+++ls+l++  +e 
  CCD23585.1 746 QNQRSDMEIEITKLSKSRDAYKDTLKNTLSNLDSITKEF 784
                 **********99999999999999999988888655444 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.97
                 XXXXXXXXXXXXXXXXXXXXXXXX......XXXXX.XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX CS
    Filament  18 dkVraLEqenkeLeakieeleekk......saevsklkelyekele..elrkqldeltkerarlqlel 77 
                  ++ +LE +n  Le +++++   +      ++ ++   + y+++++  +l+ +++ ++++  rlq+++
  CCD23585.1 814 RRINQLEDDNLLLERRLQNQPLSSrgtndaERFSNASVSKYQDNIDyyKLKYNMEVQQNNDMRLQIDY 881
                 34556666666666665554332111111122223333445555541123333333333333333333 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.2     0.021        47      10      83 ..     146     219 ..     139     234 .. 0.86
   2 ?   -0.6  21.9      0.67   1.5e+03      25     110 ..     288     373 ..     232     377 .. 0.66
   3 ?    4.1   0.4     0.024        53      17      41 ..     367     391 ..     366     403 .. 0.87
   4 ?    8.6   8.2   0.00093       2.1      10      82 ..     399     472 ..     391     492 .. 0.80
   5 ?   -1.0  23.3      0.87     2e+03      14     110 ..     505     633 ..     481     637 .. 0.69
   6 ?    3.3   5.5      0.04        90      14      49 ..     657     692 ..     646     719 .. 0.69
   7 ?    4.0   5.9     0.025        56      31      74 ..     710     753 ..     690     764 .. 0.75
   8 ?    1.3  11.8      0.17   3.8e+02      27      81 ..     734     806 ..     727     824 .. 0.54

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.021
  TMF_TATA_bd  10 svqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetl 83 
                  s++ +++ + e+  l  E ++lk ++ +l +  +      +k m   +e  + k+++ +l++e++ l+ +y+ l
   CCD23585.1 146 SSKPLKQQQEEVEMLIKENHTLKIRIRTLVNFFNGFDLNTLKNMDIIDEIGKWKQKYINLNTEYNTLKLKYDDL 219
                  56667788999999999******************************************************975 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.67
  TMF_TATA_bd  25 EgElaslkeelerleaerdea.reeivklmkeneelkelkkeleelek.............eleelqeryetlLellGeksEeveELraDvaDlKemy 108
                    El +  ++l r+ ae+d++ +++ +k+ k                +              +++l++++ +   +l   + e+e L++ + DlK  +
   CCD23585.1 288 HEELDTKLSQLDRIIAEKDDLiNKDTAKIHKLE--------------EqlnslnndttsqsTIDSLKKQLIEEKSMLERVKTENETLENKIHDLKSQL 371
                  234444445555555555443233444444444..............255555555555559*********************************987 PP

  TMF_TATA_bd 109 ke 110
                  +e
   CCD23585.1 372 RE 373
                  75 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.024
  TMF_TATA_bd  17 lsseirrlEgElaslkeelerleae 41 
                  l+s++r+ E+El++l e++ r e+e
   CCD23585.1 367 LKSQLRESEIELKALSEKCGRYETE 391
                  89*****************998865 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00093
  TMF_TATA_bd  10 svqlverlsseirrlEgElaslkeelerleaerdeareeivkl.mkeneelkelkkeleelekeleelqeryet 82 
                  s +  ++ + +i +lE+ +++l+ +le+l++er+e+++ ++   ++ ++el+  k+++++  +++++l+e   t
   CCD23585.1 399 SEKSNNYYKNKINELESKIKNLHLQLENLNTERQELQDALLGHdIAGSDELRGIKEDMQNELEKIKQLEETNHT 472
                  5556678899*****************************99652577777777777777777777777765554 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.87
  TMF_TATA_bd  14 verlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelek................................eleelqer 79 
                  v++++++i  lE    +l ++l++l++e  +++e  v+  ++  +l+++ ++l+++ k                                e  + ++ 
   CCD23585.1 505 VQSMQQTIDNLEKASIQLTSDLKKLTREVHDLNEKDVDSQEQISRLQDKIEKLKSVHKeelkivneeldgkrkelietnfqikqlqnqlfENVKNSTT 602
                  56677777777777777777777777777777777666665555555555555555557777777888888888888888777666654433333334 PP

  TMF_TATA_bd  80 yetlLellGeksEeveELraDvaDlKemyke 110
                   +   ++++ek++++e+L+  +aDl++ +++
   CCD23585.1 603 SDINEKVIKEKQDQIEDLQRKLADLRDAIRT 633
                  4455678999999999999999999998876 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.04
  TMF_TATA_bd  14 verlsseirrlEgElaslkeelerleaerdeareei 49 
                  + +l+  +r l +E a+lk++le++++++ +++ + 
   CCD23585.1 657 LGKLKEDVRLLKNERAKLKNQLETIKESKVNMETQH 692
                  568889999999999999999999999998877543 PP

  == domain 7  score: 4.0 bits;  conditional E-value: 0.025
  TMF_TATA_bd  31 lkeelerleaerdeareeivklmkeneelkelkkeleelekele 74 
                   ++ ++r  ++rd+ r+ei++ ++en +l ++ + l+++++ +e
   CCD23585.1 710 HNNLINRQDNKRDSYRNEIMETLNENKRLLAQLEALQNQRSDME 753
                  55667899999*********999999988877777777777655 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.17
  TMF_TATA_bd  27 Elaslkeelerleaerdeareeivklmkeneelke.lkkeleelek.................eleelqerye 81 
                  E + l  +le l+++r++++ ei kl+k+ ++ k+ lk++l++l +                 + e++++ry+
   CCD23585.1 734 ENKRLLAQLEALQNQRSDMEIEITKLSKSRDAYKDtLKNTLSNLDSitkefseykrrnknndeKNESMSDRYQ 806
                  5566667788888888888888888887776654313444444444333222222222233323344444444 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2     0.025        57     143     242 ..      63     180 ..      30     205 .. 0.74
   2 ?    7.4  17.1    0.0011       2.4     107     238 ..     232     362 ..     224     383 .. 0.74
   3 ?   -4.5  23.7       4.6     1e+04     123     225 ..     398     525 ..     355     564 .. 0.53
   4 ?    6.3  19.0    0.0023       5.3     116     226 ..     543     685 ..     537     716 .. 0.70
   5 ?    0.9  17.1       0.1   2.3e+02     114     252 ..     675     810 ..     670     851 .. 0.56

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.025
     DUF4407 143 aalqaeidaaearldalraeaqkeldgtk..................gtgttgvaGkgpaakekkaqldaaqael.aelkakldatarlaalraelael 222
                 ++l+ +++++    +++++e+ +e d +                   ++ ++  +G  ++ ++++++ d+++++l  el++++ +++ l+++++e + l
  CCD23585.1  63 TSLNDTVNSLAILNQEEQDELSDESDKDNayssefddtipkipephdSNNIQ-NNGSNAIHRNNENKDDEYKKNLmPELSDNIISSKPLKQQQEEVEML 160
                 4555666666666666666666666665566666666669999988766655.4777777788888888877776268899999999999999999999 PP

     DUF4407 223 eaerakeraasqaaaaaddG 242
                  +e ++ + + ++  + ++G
  CCD23585.1 161 IKENHTLKIRIRTLVNFFNG 180
                 99988877666666665555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0011
     DUF4407 107 eIdaelaeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkak 205
                  Id++++++  +e k l+++ ++  +  l++l++q ++lq+e ++a+ ++++l+++  +eld + ++    +a k +   + +a++ +++++l++l+++
  CCD23585.1 232 KIDKKKEAKLVKEHKVLQDSFNQ-TRLALDTLQNQFKKLQEEKAKADHEIRNLTTQHHEELDTKLSQLDRIIAEKDDLINKDTAKIHKLEEQLNSLNND 329
                 46777777777777777777664.56899*********************************8888887777777777777788888888888888888 PP

     DUF4407 206 ldatarlaalraelaeleaerakeraasqaaaa 238
                  ++++++++l+++l e ++ +++ ++++++ ++
  CCD23585.1 330 TTSQSTIDSLKKQLIEEKSMLERVKTENETLEN 362
                 777777777777766655555555555544443 PP

  == domain 3  score: -4.5 bits;  conditional E-value: 4.6
     DUF4407 123 lkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld.............. 207
                  +e+ ++ ++++++ele++i++l  +++++++++++l++++  +      +g    +G  + +++  +++++++++  +l+ + d              
  CCD23585.1 398 TSEKSNNYYKNKINELESKIKNLHLQLENLNTERQELQDALLGH----DIAGSDELRGIKEDMQNELEKIKQLEETNHTLQINFDdlqkdnskltrnlk 492
                 33333344888888888888888888888887777777777633....223333344555555553333333333333333333333333335444333 PP

     DUF4407 208 ...............atarlaalraelaeleae 225
                                 ++++++l++   +l+++
  CCD23585.1 493 nseenkktleiqvqsMQQTIDNLEKASIQLTSD 525
                 444444443333333222333333333333332 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0023
     DUF4407 116 qqeeakelkeqlaaa...ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld.... 207
                  qe++++l++++++     ++el+  +++++  ++e+ + + ++++l++++ +++++ +++       ++++ kek++q++++q++la+l++ ++    
  CCD23585.1 543 SQEQISRLQDKIEKLksvHKEELKIVNEELDGKRKELIETNFQIKQLQNQLFENVKNSTTSD-----INEKVIKEKQDQIEDLQRKLADLRDAIRtdqn 636
                 45555555555444444477788888888888888888888888888888888888755555.....4579**********************99**9* PP

     DUF4407 208 ..............................atarlaalraelaeleaer 226
                                                + ++a+l+++l+++++ +
  CCD23585.1 637 knlkkfdlriketemkyteelgklkedvrlLKNERAKLKNQLETIKESK 685
                 ********99999999666666644444443333344444444433333 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.1
     DUF4407 114 eeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakld.atar 211
                 ++q e++ke k +++++ + el+e  ++ +++++e +++ +r d++r+ +++e+  t ++     ++  +  ++ ++q  + + e+++l++++d  +++
  CCD23585.1 675 KNQLETIKESKVNMETQHDRELNEWISKFNSMSKEHNNLINRQDNKRDSYRNEIMETLNEN----KRLLAQLEALQNQRSDMEIEITKLSKSRDaYKDT 769
                 5666666666666666666666666666666666666666666666666666666554333....3334444444444444444444444444434444 PP

     DUF4407 212 laalraelaeleaerakeraasqaaaaaddGllarlealdr 252
                 l++  ++l+++++e ++ +++++   +++  + +r++ +++
  CCD23585.1 770 LKNTLSNLDSITKEFSEYKRRNKNNDEKNESMSDRYQNMQE 810
                 44444555555555555555555544444444444444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1009 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3955  (0.220592); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                       259  (0.0144459); expected 17.9 (0.001)
Passed Fwd filter:                       133  (0.00741815); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 3.66u 0.38s 00:00:04.04 Elapsed: 00:00:00.79
# Mc/sec: 3875.19
//
Query:       CCD23586.1  [L=119]
Description: hypothetical protein NDAI_0B05530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0076   16.1   1.1     0.0092   15.9   1.1    1.1  1  CLTH      CTLH/CRA C-terminal to LisH motif domain


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   1.1   5.1e-07    0.0092       9      60 ..      54     103 ..      46     118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.1e-07
        CLTH   9 iklilegdlseaiewinenkpellesnsnLeFkLkllqfielirgktkdiee 60 
                 ++li eg ++ +i++  + +++lle+ ++Le ++ +l  ie+i  k ++ e+
  CCD23586.1  54 YTLIDEGIIEGVIDRNIQEFKKLLEKCNELENHFDMLDQIEMIT-K-TFSER 103
                 578999*********99999***********************9.6.34333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1110  (0.0619109); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 918.37
//
Query:       CCD23587.1  [L=585]
Description: hypothetical protein NDAI_0B05540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.4e-48  161.8   0.1    4.8e-47  159.4   0.0    2.2  2  VHS              VHS domain
    2.2e-22   79.4   0.4    6.5e-22   77.9   0.4    1.9  1  Alpha_adaptinC2  Adaptin C-terminal domain
    2.8e-19   69.2   1.5    8.4e-19   67.7   0.4    2.4  2  GAT              GAT domain
    1.7e-06   27.5   0.4    4.8e-06   26.1   0.4    1.8  1  GGA_N-GAT        GGA N-GAT domain


Domain annotation for each model (and alignments):
>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.0   1.1e-50   4.8e-47       2     141 .]      17     161 ..      16     161 .. 0.98
   2 ?   -0.8   0.2      0.28   1.2e+03      80     114 ..     191     221 ..     188     247 .. 0.65

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 1.1e-50
                 HHHHHHHHHHHHHT-TT-SS--HHHHHHHHHHHHCS.TCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTT CS
         VHS   2 ssasslekliekATdeslreedlslileicDlinek.eagpkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekk 99 
                 +s+s+l ++i++A+++sl+e+dl+l+l+++D+inek +a p++a+ +i   in+++ h+a++aL lld+lvkNcG++fhl+i++keflnelvk+++e++
  CCD23587.1  17 ASGSPLLRKIQRACRMSLPEPDLALNLDVADYINEKqGAAPRDAAIAIVNLINNRDVHTAIFALALLDVLVKNCGYPFHLQISRKEFLNELVKRFPEHP 115
                 578999******************************9************************************************************** PP

                 TCHCS.HHHHHHHHHHHHHHHT....TT-TTGHHHHHHHHHHHHTT CS
         VHS 100 nsklakvkkkvlelleeWadaf....knkpelkkisdvykllkrkg 141
                 + +++kv++ vl+++eeW++++    ++k++l +i+d+ +llk+kg
  CCD23587.1 116 PMRYSKVHRLVLTAIEEWYQTIckhsSYKEDLGYIRDMRRLLKYKG 161
                 *************************99*****************98 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.28
                 HHHTSHHHHHHHHHHHHCTTTCHCS.HHHHHHHHH CS
         VHS  80 leiaskeflnelvklilekknsklakvkkkvlell 114
                 +eia+   l+el+++ ++++  + +k    +++++
  CCD23587.1 191 QEIAQAAKLEELIRRGKPEDLREANK----LMKIM 221
                 68888888888888888888888644....44444 PP

>> Alpha_adaptinC2  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.4   1.5e-25   6.5e-22       2     111 .]     472     583 ..     471     583 .. 0.92

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 1.5e-25
                      EEEEEEETTEEEEEEEEETTSTTEEEEEEEEEE-SSS-EEEEEEEEEEBTTCEEEEEEES-S-B-TTCEEEEEEEEEEES...CTTS-EEEEEE CS
  Alpha_adaptinC2   2 evvlyekddlqIgfkfekperpgqiritlsftNkssqpisnfsfqaavpkslklqlqppsstvlppnpggqitqvllien...pskkplrmrlr 92 
                      ++ + +++ ++I+f++++ e++ +i+++ +f+N+s++ +++++f +a pks+kl+l p+s+++lpp  ++ itq+ +++n    s kpl+ +++
       CCD23587.1 472 RILVHQSSTVKIEFELSR-ETNTTIKLKSYFSNTSTSNLTQLTFLVAIPKSMKLRLLPQSTNELPPLVQNGITQEAWVDNfdvSSVKPLKIKWK 564
                      57899*************.****************************************************************99********* PP

                      EEEE.CTCEEEEEEEEEEE- CS
  Alpha_adaptinC2  93 isyk.vgqaikeqidvlkfp 111
                      ++y+  g+  +e++ v+ +p
       CCD23587.1 565 LNYMkSGC-PAEETAVFTLP 583
                      ****5555.66666666665 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.4   1.9e-22   8.4e-19       1      75 [.     244     316 ..     244     318 .. 0.92
   2 ?   -1.7   0.0      0.85   3.8e+03      16      35 ..     424     442 ..     419     448 .. 0.73

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1.9e-22
         GAT   1 rnnaklLsemLsstepdeellenellkeLyetckamqpriqklieetadeedllaelLqlNDeLnnvlerYerlk 75 
                 +++a+l++em+s+  ++  +++ne+++eL +++k +qp++qk+iee  d++ l+++lL++ND +n++le+Y+ lk
  CCD23587.1 244 KRKADLFNEMMSTSASP--DVSNETIEELFSALKGAQPKFQKIIEEEHDDDALVQDLLKFNDTVNQLLEKYSLLK 316
                 689*********98844..589************************777777*******************9987 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.85
         GAT  16 pdeellenellkeLyetcka 35 
                 p  +  + +ll eL +t  +
  CCD23587.1 424 PA-NANSLDLLGELSTTTSN 442
                 44.67789999999998765 PP

>> GGA_N-GAT  GGA N-GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.4   1.1e-09   4.8e-06       6      39 .]     195     230 ..     192     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 1.1e-09
   GGA_N-GAT   6 ksklLarLLkSknpeDLqaANrLIKsmV..keddkr 39 
                 ++ +L++L++ ++peDL++AN+L K m   ked++r
  CCD23587.1 195 QAAKLEELIRRGKPEDLREANKLMKIMAgfKEDNAR 230
                 5789*********************99755777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1198  (0.0668191); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3935.90
//
Query:       CCD23588.1  [L=1120]
Description: hypothetical protein NDAI_0B05550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-10   40.9   0.1    1.9e-10   40.9   0.1    2.6  3  HSA              HSA
    5.5e-09   36.1   0.3    5.5e-09   36.1   0.3    2.6  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
    0.00025   21.2   0.0    0.00085   19.5   0.0    2.0  1  Myb_DNA-binding  Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> HSA  HSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.1   3.2e-14   1.9e-10       6      60 ..     411     465 ..     408     468 .. 0.95
   2 ?   -4.1   0.9         3   1.8e+04      59      68 ..     858     867 ..     853     869 .. 0.83
   3 ?   -4.3   1.5         3   1.8e+04      43      66 ..    1009    1032 ..    1007    1034 .. 0.58

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 3.2e-14
                 XXXX--HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--XXXXXXXXXX CS
         HSA   6 rrqkthhdylLeeilwhakdfkeerkskrakakklaravakyhnniekeeqkrie 60 
                 ++q+thh  lL+e++w+++dfke+ + k+a+   +a+av++y++ ++  + k++e
  CCD23588.1 411 NNQHTHHSTLLNEAKWMSTDFKESLNFKIAMSMVVAKAVQDYWKFGKIVCIKVKE 465
                 57******************************************99999998876 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3
                 XXXXXXXXXX CS
         HSA  59 iereekerlk 68 
                  +r++k+r++
  CCD23588.1 858 LRRTAKNRIQ 867
                 5799999998 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 3
                  HHHHHH--XXXXXXXXXXXXXXXX CS
         HSA   43 avakyhnniekeeqkriereeker 66  
                  a ++y n  + ++q +++ + +++
  CCD23588.1 1009 AAENYYNTLKEQKQLQQQHQLQQQ 1032
                  566666666666666666555555 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.3   9.2e-13   5.5e-09       1      50 [.     691     752 ..     691     760 .. 0.93
   2 ?   -3.9   0.9       2.9   1.7e+04       4      17 ..    1018    1031 ..    1016    1037 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 9.2e-13
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaeal.n............rRtpkqcfdrwknkLrpkisrk 50 
                     W +e+d++L++    yg++W++I++++ +            rRtp+qcf+r+ + L+ k++ +
      CCD23588.1 691 WLPEDDQELVRNINSYGYNWELISSHMiSdrpsqsfmsnmeRRTPWQCFERFVQ-LNEKLNFN 752
                     889***********************8569************************.99998765 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.9
  Myb_DNA-bind_6    4 eEdeiLlklvekyg 17  
                       E++ L++ ++ ++
      CCD23588.1 1018 KEQKQLQQQHQLQQ 1031
                      69999999999875 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.4e-07   0.00085       4      44 ..     691     744 ..     689     746 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.4e-07
                      SBHHHHHHHHHHHHHHTTCHHHHHHHHTS.............S-HHHHHHHHHH CS
  Myb_DNA-binding   4 WteeEdelLleavkkhGnrWkkIaerlgg.............Rtekqcrsrwrn 44 
                      W +e+d+ L++ ++ +G +W++I++++ +             Rt+ qc +r+ +
       CCD23588.1 691 WLPEDDQELVRNINSYGYNWELISSHMISdrpsqsfmsnmerRTPWQCFERFVQ 744
                      99*********************9988866788888888999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1701  (0.0948742); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.34s 00:00:01.23 Elapsed: 00:00:00.50
# Mc/sec: 6733.53
//
Query:       CCD23589.1  [L=292]
Description: hypothetical protein NDAI_0B05560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-48  164.7   2.7    2.4e-48  164.7   2.7    1.4  2  BCIP      p21-C-terminal region-binding protein
  ------ inclusion threshold ------
        5.6    6.9   7.8       0.23   11.4   0.4    2.0  2  RPN2_C    26S proteasome regulatory subunit RPN2 C-terminal d


Domain annotation for each model (and alignments):
>> BCIP  p21-C-terminal region-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.72   6.4e+03     178     204 ..      16      42 ..       8      43 .. 0.52
   2 !  164.7   2.7   2.6e-52   2.4e-48       1     206 []      55     250 ..      55     250 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.72
        BCIP 178 kkkkkkkkkkkkkseedeliyfhpEde 204
                 ++++ ++k+++ +++e+e+ ++   de
  CCD23589.1  16 RRNSANDKANNGTDSESEIDISSTDDE 42 
                 233333333333366777777776665 PP

  == domain 2  score: 164.7 bits;  conditional E-value: 2.6e-52
        BCIP   1 evnVdFeffdpeee.dfhgiknLlrqlff.ldaeevdlseLadlileqktvGsvvkvdgeesDpvygllsvlnlkkhkekecikqlkeyllekakksas 97 
                 +vn+dF+f++ +++ dfh++knL rql+  +++++++ls+Ladlil+++  ++++k+dg esDp y++ls++++k++k+    +++ +yl +k+ ++ +
  CCD23589.1  55 IVNIDFDFYNGNPDvDFHAMKNLSRQLLGpQESNKIQLSNLADLILKSP--TTTIKTDGTESDP-YCFLSFIDYKENKD----SDYAKYLHSKIDSKLT 146
                 59***************************9*******************..6************.*********99997....9*********997666 PP

        BCIP  98 skkklkklLssskdkkvglliseRliNiPvevvpplykmLleeiewaqeeeeekesykfthylilskvykevkskede....kkkkkkkkkkkkkkkse 192
                    +++++ + s++k + l++seRliN+P+evvpplyk  le++++a  ++   ++y+f  y+i+s+ y+  + ++d+    ++k+++ +++++kk+ +
  CCD23589.1 147 --MFFNNIDN-SSNKTCSLVMSERLINMPPEVVPPLYKITLEDVTTALGDD---KHYDF--YVIVSRKYEV-NFDMDNddteTRKDRTISNDRSKKRVK 236
                 ..67777554.7779*********************************888...88888..********75.55555557656666666677777779* PP

        BCIP 193 edeliyfhpEdeil 206
                 +de+ yfh+Ed+++
  CCD23589.1 237 NDEVDYFHEEDRFF 250
                 ************98 PP

>> RPN2_C  26S proteasome regulatory subunit RPN2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   2.6e-05      0.23      53     119 ..      13      81 ..       2      95 .. 0.66
   2 ?   -1.6   1.9      0.25   2.3e+03      78      97 ..     216     235 ..     203     264 .. 0.44

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHHG.--------------------------------...--SS----SSEEEEESSSB-- CS
      RPN2_C  53 kakarakkkekekeeeekeedkmdvdeekeekekkekekkekekee...ekkkkekektfekleNpaRVl 119
                   k+r++ ++k++ + +++e+++d++++++e+e+++k ++e+e  +   +  + ++  +f+ ++N++R l
  CCD23589.1  13 SRKRRNSANDKAN-NGTDSESEIDISSTDDEAEENNKVDDEEEIVNidfDFYNGNPDVDFHAMKNLSRQL 81 
                 3344444444444.56677777888776666666666666666555788999999*************65 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.25
                 -------------------- CS
      RPN2_C  78 deekeekekkekekkekeke 97 
                 d++++ k+++ +++++k++ 
  CCD23589.1 216 DDTETRKDRTISNDRSKKRV 235
                 33222222222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2130.21
//
Query:       CCD23590.1  [L=449]
Description: hypothetical protein NDAI_0B05570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-56  191.0   0.0      3e-56  190.5   0.0    1.2  1  ThiF          ThiF family
    1.8e-10   41.3   0.0    7.1e-10   39.4   0.0    2.0  2  Rhodanese     Rhodanese-like domain
     0.0033   17.5   0.0     0.0091   16.1   0.0    1.8  1  Shikimate_DH  Shikimate / quinate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.5   0.0   5.1e-60     3e-56       9     227 ..      59     269 ..      44     303 .. 0.88

  Alignments for each domain:
  == domain 1  score: 190.5 bits;  conditional E-value: 5.1e-60
                 HHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCGCCS-HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   9 gedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritdetvleell 107
                 g   q kL+++k+l++GaGglGs++l +La++Gvg + +vDnD ++ sNl+Rq+++ ++ + + K+e+a+ ++q++np+v+v++++ r+t +++  e++
  CCD23590.1  59 GLPAQLKLKSAKILIIGAGGLGSPALLYLAGAGVGTIGIVDNDIVDTSNLHRQIIHDSHRVNMLKCESAKLSIQNLNPNVNVVTYPTRLTHSNAF-EIF 156
                 448899*************************************************************************************8744.9** PP

                 TT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEE.CCS-ECTSS-TGGS.EECCCCEEHHHHHHCTE-B-HHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 108 esvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviip.gktgcyeCldpsstedptekkvplctsiagnipaiatttavvaglaalell 205
                 e++Dl++d++D+  +r+l+ +++vk gi +++++ +g+e q+++ +  +  +cy+C +p     p++ +v +c s  g   +i++ ++v++ ++a+e++
  CCD23590.1 157 EGYDLILDCTDTPLTRYLISDVAVKLGITVVSGSGVGTEAQLTILNFmNMGPCYRCFFP---VPPPPTSVASC-SEGG---VIGPCIGVMGVMMAVEAI 248
                 *********************************************4359**********...***********.9999...****************** PP

                 HHHTTBCGGGCCEEEECCTTTT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 206 kllsgkeklenslltqvdlles 227
                 k++ g  + en+ + ++ l++ 
  CCD23590.1 249 KFIVGAYTVENFEP-YLVLYSG 269
                 ***88888888877.5555555 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         1   6.2e+03      48      73 ..     118     144 ..     110     161 .. 0.76
   2 !   39.4   0.0   1.2e-13   7.1e-10      11     105 ..     349     439 ..     340     441 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1
   Rhodanese  48 eapllelpeellel.gidnkktvvvyc 73 
                   ++l++  + l+  +++++  vv+y 
  CCD23590.1 118 RVNMLKCESAKLSIqNLNPNVNVVTYP 144
                 566777777777778899999999996 PP

  == domain 2  score: 39.4 bits;  conditional E-value: 1.2e-13
   Rhodanese  11 kgkvallDvRppeeYekghIpgAvnvskdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallk...klGyknvsvldGGfkawk 105
                 k++ + lDvRp + Y+ +h+p  vn+      +  k+++ + el++e+++  ++ +++v+v+c+ g++++ a++llk   k G  nv+ ++GGf ++ 
  CCD23590.1 349 KENLIMLDVRPNHHYNISHLPDTVNI----PLKVLKNMNGSMELLQEVIPT-VNTESEVIVLCRYGNDSQLATRLLKdefKIG--NVKDVKGGFFKYI 439
                 344569********************....556667777777888888886.9***************999999999533366..9********9985 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.5e-06    0.0091       9      65 ..      65     123 ..      59     154 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.5e-06
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH..T.ET-EEEE CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel..kgeeiealk 65 
                   +lk++k+l+iGaG +++ ++ +L+ +gv  + ++  ++   ++l +++  +++++++lk
    CCD23590.1  65 KLKSAKILIIGAGGLGSPALLYLAGAGVGTIGIVDNDIVDTSNLHRQIihDSHRVNMLK 123
                   689*******************************9999999999998843334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3462.62
//
Query:       CCD23591.1  [L=757]
Description: hypothetical protein NDAI_0B05580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1184  (0.0660383); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5106.65
//
Query:       CCD23592.1  [L=380]
Description: hypothetical protein NDAI_0B05590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-66  223.7   0.0    7.3e-66  222.3   0.0    1.6  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    2.3e-06   26.8   0.0    5.4e-06   25.6   0.0    1.6  2  Aminotran_5      Aminotransferase class-V
     0.0009   18.5   0.0     0.0017   17.6   0.0    1.6  1  Aminotran_1_2    Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.3   0.0   1.2e-69   7.3e-66       2     382 .]       6     372 ..       5     372 .. 0.88

  Alignments for each domain:
  == domain 1  score: 222.3 bits;  conditional E-value: 1.2e-69
                      HHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH.......CTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS CS
  Cys_Met_Meta_PP   2 Tllvhagqekdeqtgavavpiyltstykfkdvdea.......fageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailall 88 
                      T+l+h++ + d++ + va+pi  t+t+++++ d             ek  +YsR+  p+++ le+  +++ +g+ a+++ssG+aA    + a++
       CCD23592.1   6 TALIHSDDK-DNRVSDVAPPINVTTTFRYDNDDLVpwterenLDFMEKTPIYSRLAHPNSTRLESIFSEILDGH-AVIYSSGLAAF---FAAMI 94 
                      899999999.669*****************766669855433333345568*********************96.689********...66777 PP

                      -TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS CS
  Cys_Met_Meta_PP  89 kaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllq 182
                      +   + +   + Y g +++ + ++++++ + +  d      +e+ + +  ++v+lEtp np+   +D+e+ ak a+++g+l++vD tfa p lq
       CCD23592.1  95 HYNPKRIFIGQSYHGVRAIANILTRNFQTKQHTLDE-----IEQ-FAQPGDIVHLETPVNPFGTSLDLEDFAKKAHEKGALLLVDSTFAPPPLQ 182
                      888888999999*****9999999999888877765.....444.445689******************************************* PP

                      -GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTS.TTEEE CS
  Cys_Met_Meta_PP 183 rplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekh.pkvek 275
                      +  ++++Di++hSaTKy gGhsd++ Gv+vvk+ e+++++l+     lG  +   ++++llr l+T ++R+ +++enA k+ +fL+++ +k  k
       CCD23592.1 183 NVWDFNVDIIMHSATKYFGGHSDLLSGVLVVKE-EAVARQLRDDRIYLGTNVANLESFMLLRSLRTFEMRMLKQSENATKIVSFLDSNrDKYDK 275
                      ********************************9.99******9999***************************************999756666 PP

                      EE-TTSTTS.TTHHHHHHHSSSG-S.EEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--S CS
  Cys_Met_Meta_PP 276 vyYpglpsh.pqhelakkqlkgagg.vlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGi 367
                      v     +s+ ++  ++kkqlkg+ g v+s +l ++ e+ kkf   lk f +a+slGg+esl+e  a++           +  ++++liR+s+G+
       CCD23592.1 276 VLKSITHSSlQKESFVKKQLKGGYGpVFSISLMNK-EQCKKFPPMLKYFHHATSLGGIESLVEWRAMT-----------DPYIEQTLIRVSIGC 357
                      65554444414456899999999888*******99.78************************998765...........4568889******** PP

                      S-HHHHHHHHHHHHH CS
  Cys_Met_Meta_PP 368 EdvdDliaDlkqale 382
                      E++dDli+Dl++ale
       CCD23592.1 358 ENADDLIQDLANALE 372
                      *************96 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   9.1e-10   5.4e-06     127     205 ..     126     202 ..     112     236 .. 0.83
   2 ?   -2.5   0.0      0.31   1.8e+03     352     370 ..     348     366 ..     333     367 .. 0.76

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 9.1e-10
                  BEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTSS CS
  Aminotran_5 127 ldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghKllgP 205
                   +lde+e+  ++  ++v++    n  Gt  ++e+++k a++kgal+lvD++ a +    +v +++vD+++ s+ K++g 
   CCD23592.1 126 HTLDEIEQ-FAQPGDIVHLETPVNPFGTSLDLEDFAKKAHEKGALLLVDSTFAPPPL-QNVWDFNVDIIMHSATKYFGG 202
                  45666654.4455689*********************************98777766.59***************9885 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.31
                  S-EEEEE--TTS-HHHHHH CS
  Aminotran_5 352 egtvRaSlyiynteeevdr 370
                  +  +R+S+++ n  + ++ 
   CCD23592.1 348 QTLIRVSIGCENADDLIQD 366
                  4889*******99887775 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.9e-07    0.0017     138     223 ..     127     200 ..     106     371 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.9e-07
                    HHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTT CS
  Aminotran_1_2 138 alkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKaf 223
                     l+e  +  ++  ++ +e+p NP Gt ++le+  k    a+++++ll+vD ++a   ++         nv +   ++i+ s  K f
     CCD23592.1 127 TLDEIEQFAQPGDIVHLETPVNPFGTSLDLEDFAKK---AHEKGALLLVDSTFAPPPLQ---------NVWDFNVDIIMHSATKYF 200
                    34444444556669******************9999...***********998754444.........333333346666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2744.82
//
Query:       CCD23593.1  [L=457]
Description: hypothetical protein NDAI_0B05600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-25   87.3   8.2    9.8e-25   86.2   2.1    3.5  3  Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
       0.01   15.5   0.4       0.01   15.5   0.4    2.1  2  ubiquitin  Ubiquitin family


Domain annotation for each model (and alignments):
>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.02   1.8e+02       7      61 ..     208     273 ..     205     279 .. 0.59
   2 ?   -0.0   0.2     0.088   7.9e+02      40      69 ..     285     314 ..     276     317 .. 0.82
   3 !   86.2   2.1   1.1e-28   9.8e-25       1      72 []     385     456 ..     385     456 .. 0.99

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.02
                 ESSS--EEEEEETTSBHHHHH....HHHHHHHT----.......TT-EEEETTEE--TTSBGGGSS CS
   Rad60-SLD   7 gkdgkevkikVkptttvskLi....eayrkkkgipee.......qkvrLiFDGeeLdpnstvedld 61 
                 g  +k v++kV  +++++k++    + + k+ +ip         ++v L+ ++ +L + +t+++l 
  CCD23593.1 208 GTMNKCVQVKVLGKFQFQKILpaalTGLIKAYSIPSVlqkyysvDNVSLYWNHAKLLDFMTCNSLN 273
                 566777777777777777765111123444444444444445557777777777777777777665 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.088
                 TT-EEEETTEE--TTSBGGGSS--TTEEEE CS
   Rad60-SLD  40 qkvrLiFDGeeLdpnstvedldiedgdtid 69 
                   ++Li +++e+++++ + +  ++d+ ++ 
  CCD23593.1 285 VDIELISKDDEIENEKAITEKLLKDEREVS 314
                 56899999******9999999888887765 PP

  == domain 3  score: 86.2 bits;  conditional E-value: 1.1e-28
                 EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD   1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72 
                 +ki+l+g+d+k+++++V+ tt++sk++e+yr +k++p++ k++L+FD+eeL+  +t+ed+d+ed+d+i+vvi
  CCD23593.1 385 MKIALVGQDNKKIHVNVRGTTPFSKVAEYYRIQKQLPQNAKIKLVFDHEELSLYETIEDQDMEDDDMIEVVI 456
                 89*********************************************************************8 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.35   3.1e+03      58      61 ..     306     309 ..     280     334 .. 0.57
   2 ?   15.5   0.4   1.2e-06      0.01       6      70 ..     392     457 .]     386     457 .] 0.92

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.35
                 TTST CS
   ubiquitin  58 giqd 61 
                  ++d
  CCD23593.1 306 LLKD 309
                 3333 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.2e-06
                 TTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGE.EEEETTEEE-TTSBHGGHTTSTTEEEEEEES CS
   ubiquitin   6 ldgkkitleveesdtveelKekiaekegipaeqq.rLiysGkvLedertleeygiqdgstlhlvlr 70 
                 +d+kki++ v  ++  +++ e +  ++++p +   +L+++ ++L+  +t+e+ +++d++ +++v++
  CCD23593.1 392 QDNKKIHVNVRGTTPFSKVAEYYRIQKQLPQNAKiKLVFDHEELSLYETIEDQDMEDDDMIEVVIS 457
                 899************************99988666*****************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2038  (0.113671); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3334.77
//
Query:       CCD23594.1  [L=95]
Description: hypothetical protein NDAI_0B05610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-20   72.4  13.7    3.4e-20   71.9  13.7    1.3  1  DSS1_SEM1  DSS1/SEM1 family


Domain annotation for each model (and alignments):
>> DSS1_SEM1  DSS1/SEM1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9  13.7   1.9e-24   3.4e-20       3      60 .]      28      88 ..      26      88 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 1.9e-24
                HHHHHHHHHTTSTTHHHHH----------......---BESSTTTSCGGCHHHHHHHHHHHH CS
   DSS1_SEM1  3 kkklklLeeDDEFEeFpvedwdeeeeeake....ekklWednWDDddveddFskqLreELek 60
                ++++k+LeeDDEFE+Fp+++w+e+++ + +    +++lW +nWDD +v+ddF++ L++ELe+
  CCD23594.1 28 TTTKKTLEEDDEFEDFPIDTWSEKDTLK-NvdniQTHLWVENWDDVEVDDDFTNALKNELER 88
                6789*****************8888754.347789*************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1108  (0.0617993); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 762.64
//
Query:       CCD23595.1  [L=482]
Description: hypothetical protein NDAI_0B05620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-41  141.7   0.0    4.5e-41  140.4   0.0    1.7  1  AAA             ATPase family associated with various cellula
    4.7e-21   74.5   0.3    9.8e-21   73.5   0.3    1.6  1  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
    7.8e-09   35.2   0.0    1.9e-08   34.0   0.0    1.7  1  AAA_lid_3       AAA+ lid domain
    1.9e-05   25.2   0.1      0.016   15.6   0.0    2.5  2  AAA_16          AAA ATPase domain
    4.1e-05   23.8   0.0    0.00025   21.2   0.0    2.2  2  AAA_2           AAA domain (Cdc48 subfamily)
    5.9e-05   23.1   0.7    0.00024   21.1   0.1    2.3  2  AAA_5           AAA domain (dynein-related subfamily)
    0.00094   19.0   0.0     0.0025   17.6   0.0    1.7  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
     0.0033   17.7   2.3      0.051   13.9   0.4    2.8  2  AAA_22          AAA domain
     0.0039   17.4   0.1      0.028   14.6   0.0    2.3  2  AAA_33          AAA domain
     0.0074   15.8   0.2      0.073   12.5   0.1    2.2  2  PhoH            PhoH-like protein
  ------ inclusion threshold ------
      0.015   14.5   0.0      0.047   12.9   0.0    2.0  2  DUF815          Protein of unknown function (DUF815)
      0.016   14.6   0.1      0.041   13.3   0.1    1.7  2  Mg_chelatase    Magnesium chelatase, subunit ChlI
       0.03   14.0   0.0       0.07   12.9   0.0    1.6  1  IstB_IS21       IstB-like ATP binding protein
      0.035   13.9   0.6        0.3   10.8   0.0    2.2  2  AAA_11          AAA domain
      0.056   13.8   0.5       0.19   12.1   0.0    2.0  2  AAA_19          AAA domain
        0.1   12.1   0.0       0.23   11.0   0.0    1.5  1  AAA_7           P-loop containing dynein motor region
       0.11   12.5   6.2       0.16   12.0   3.3    2.4  2  TolA_bind_tri   TolA binding protein trimerisation
       0.13   11.9   0.9        0.4   10.4   0.1    2.2  2  AAA_24          AAA domain
        2.4    8.6   8.4        5.2    7.5   5.3    2.4  2  Fez1            Fez1
        5.3    7.2   7.8        2.8    8.1   4.0    2.4  2  Cep57_CLD_2     Centrosome localisation domain of PPC89


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   0.0     5e-44   4.5e-41       2     132 .]     267     399 ..     266     399 .. 0.96

  Alignments for each domain:
  == domain 1  score: 140.4 bits;  conditional E-value: 5e-44
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgvk 97 
                 l+yGppGtGKTlla+a a +++++fl++ +++l+++++ge++k +r+ f+ akeka p+i+fiDE+da++++r   ++s ++e +r++ +Ll++ldg++
  CCD23595.1 267 LMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMFIGEGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRfdsEKSGDREVQRTMLELLNQLDGFS 364
                 89*****************************************************9.****************997777889999************** PP

                 TSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  98 kkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 ++ ++v v++atnr+d ldpallr gR+drkie++l
  CCD23595.1 365 SD-DRVKVLAATNRVDVLDPALLRsGRLDRKIEFPL 399
                 *7.66****************************985 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.3   1.1e-23   9.8e-21       1      57 []     127     208 ..     127     208 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 1.1e-23
                     EEEEEEE-TT.........................SSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB   1 VatVsEvldd.........................teraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkLP 57 
                     Va+V+Ev+d                          ++ a+Vktss+++v++++ g+v++++L+p+DlV+v+kd+++++EkLP
      CCD23595.1 127 VANVVEVMDMdeiedkennesttqggnvnldnatqGKAAVVKTSSRQTVFLPMVGLVDPTKLKPNDLVGVNKDSYLVLEKLP 208
                     9********************************************************************************9 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   2.1e-11   1.9e-08       1      45 []     421     465 ..     421     465 .. 0.97

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 2.1e-11
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfee 45 
                 d++++eLA+ T+ + GA l+a+  eA++ Alr g  +++ edf e
  CCD23595.1 421 DINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVE 465
                 89****************************************975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.8e-05     0.016      22      56 ..     261     292 ..     233     307 .. 0.77
   2 !    7.1   0.0    0.0073       6.6     122     149 ..     310     341 ..     306     372 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.8e-05
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggifl 56 
                   p   l +G++G+GK+ l+r+++ + +++   fl
  CCD23595.1 261 RAPKGALMYGPPGTGKTLLARACAAQTNAT---FL 292
                 5568899***************99654433...54 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0073
      AAA_16 122 llkrllallsrderplvlvlDdlq.....wade 149
                 l+++++al+++ + p+++++D+l+     ++d+
  CCD23595.1 310 LVRDAFALAKE-KAPTIIFIDELDaigtkRFDS 341
                 55667788888.778*********777774444 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.7   1.5e+03      60     108 ..     142     188 ..      89     204 .. 0.57
   2 !   21.2   0.0   2.8e-07   0.00025       7     104 ..     267     358 ..     263     366 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.7
                 TTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHHHH--EE CS
       AAA_2  60 ppgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqileggtl 108
                 ++ + +  +gG v lD+    +      +  Sr+ V+  +  +++ ++l
  CCD23595.1 142 KENNESTTQGGNVNLDNATQGK--AAVVKTSSRQTVFLPMVGLVDPTKL 188
                 3333333344444444332111..1334445555555555555555555 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.8e-07
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG-------------HHHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpkessgadvSregVqrdLLqil 103
                 l+ gp g+Gkt+la+a a   ++    ++  + a +l +      + +  +  +++   a+e+   i+++DE+d i  k+  ++     +Vqr +L +l
  CCD23595.1 267 LMYGPPGTGKTLLARACAAQTNA----TFLKLAAPQLVQ----MFIGEGAKLVRDAFALAKEKAptIIFIDELDAIGTKRFDSEKSGDREVQRTMLELL 357
                 788****************9996....999999999999....55555555555555555555566************86666677778********99 PP

                 H CS
       AAA_2 104 e 104
                  
  CCD23595.1 358 N 358
                 6 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       6.4   5.7e+03      85     108 ..     122     145 ..      77     165 .. 0.67
   2 !   21.1   0.1   2.6e-07   0.00024       3     136 ..     267     387 ..     265     388 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.4
                 HHHHHHSSEEE..-SSSEEE---. CS
       AAA_5  85 Llslleerrllleeggelvkaknd 108
                  l++l  + + +++++e ++++n+
  CCD23595.1 122 QLPYLVANVVEVMDMDEIEDKENN 145
                 344444555555555555555554 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 2.6e-07
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHH.HSSEEE..-SS CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlsll.eerrllleegg 100
                 l+ GppGtgK+ la+  aa +n++++  + ++      l++     +g +  +d  +  + + + i+++DE++ + ++ ++s  s   e +r +le ++
  CCD23595.1 267 LMYGPPGTGKTLLARACAAQTNATFLKLAAPQ------LVQMFI-GEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDrEVQRTMLELLN 358
                 899********************999887776......776666.5777778888888788899***********999998887764144555556666 PP

                 SEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5 101 elvkaknddllerfrviatanpldrslnelspalrs 136
                 +l ++++dd   r+ v+a++n++d     l+pal++
  CCD23595.1 359 QLDGFSSDD---RVKVLAATNRVD----VLDPALLR 387
                 677777654...799999999999....88888875 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.7e-06    0.0025      36      94 ..     266     332 ..     239     339 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.7e-06
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvleka.....gdla...alltnleekdvlfideih 94 
                  l+yGpPG Gkt la+  a++ ++++   ++P l +      + l+     l++ ++  ++fide+ 
  CCD23595.1 266 ALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMfigegAKLVrdaFALAKEKAPTIIFIDELD 332
                 69***********************999999988653221112332110223444556788888876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       8.7   7.8e+03      99     103 ..      95      99 ..      48     122 .. 0.61
   2 !   13.9   0.4   5.6e-05     0.051       9      31 ..     267     289 ..     261     379 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.7
      AAA_22  99 Eaqhl 103
                 E q+l
  CCD23595.1  95 ELQRL 99 
                 44444 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.6e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqlde 31 
                 + +G++GtGKT+l+r  + q ++
  CCD23595.1 267 LMYGPPGTGKTLLARACAAQTNA 289
                 569**************999832 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.3   1.1e+03      22      75 ..      54     107 ..      48     113 .. 0.71
   2 !   14.6   0.0   3.1e-05     0.028       3      29 ..     267     293 ..     266     359 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.3
      AAA_33  22 klgavllssdtlrr.rlfgtdqqsktdytrvldrlyqilnelarkalsagrnvil 75 
                 +l+a++l  d++++  +     q ++ +t++ld+ ++i +  + ++ls+++nv+l
  CCD23595.1  54 ELDAQILPGDDELDsEILSLSTQELQTRTKLLDNEIRIFRSEL-QRLSHENNVML 107
                 5556666666655555555556666677889999999986666.79****99998 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.1e-05
      AAA_33   3 llvGlpGsGKstlaerllkklgavlls 29 
                 l+ G+pG+GK+ la+  ++++ a++l 
  CCD23595.1 267 LMYGPPGTGKTLLARACAAQTNATFLK 293
                 799**************9999866543 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   8.1e-05     0.073      23      43 ..     267     287 ..     253     293 .. 0.87
   2 ?    0.4   0.0      0.41   3.7e+02      75     117 ..     348     390 ..     318     395 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.1e-05
                 EEE--TTSSTTHHHHHHHHHH CS
        PhoH  23 faiGpaGtGKtylavalavea 43 
                  + Gp GtGKt+la a+a++ 
  CCD23595.1 267 LMYGPPGTGKTLLARACAAQT 287
                 689***************985 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.41
                 ---TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-- CS
        PhoH  75 kvdpylrplydaLkdllgaekvekllekgkievaplaymRGrT 117
                  v+  +  l ++L+ + ++++v+ l  ++++ v++ a +R   
  CCD23595.1 348 EVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGR 390
                 56667788999999999********************999554 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.3   2.9e+03     188     211 ..      27      50 ..      25      67 .. 0.78
   2 ?   12.9   0.0   5.2e-05     0.047      52     116 ..     262     331 ..     211     396 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.3
      DUF815 188 lwlgFykldqeeYleiveklakkl 211
                 + l+ y ld+++Yl + +k  +++
  CCD23595.1  27 IYLTLYLLDRKQYLLVCRKKYRMA 50 
                 678899999999999998766554 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 5.2e-05
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklve...llrerperfilfvDDL 116
                 + + +L++G  GtGK  l +a+ ++++++ L+l   ++ +  + e  klv+   +l++++   i+f+D L
  CCD23595.1 262 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAapQLVQMFIGEGAKLVRdafALAKEKAPTIIFIDEL 331
                 34679************************98875334555556666666552226788889999999988 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.6e-05     0.041      25      42 ..     266     283 ..     249     293 .. 0.86
   2 ?   -3.5   0.0       6.3   5.6e+03      91     120 ..     304     336 ..     300     341 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.6e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                    l++GppG+GKt+la++ 
    CCD23595.1 266 ALMYGPPGTGKTLLARAC 283
                   59*************975 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 6.3
  Mg_chelatase  91 vGggskpkpGeislahn...GvLfLDElpefkr 120
                   +G g+k    + +la++    ++f+DEl  + +
    CCD23595.1 304 IGEGAKLVRDAFALAKEkapTIIFIDELDAIGT 336
                   677777777777777653336899999987655 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   7.8e-05      0.07      46      72 ..     262     288 ..     252     346 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.8e-05
   IstB_IS21  46 kkenivllGpsGvGKshlaialgveav 72 
                 + ++ ++ Gp+G+GK+ la a + ++ 
  CCD23595.1 262 APKGALMYGPPGTGKTLLARACAAQTN 288
                 5667899************99887654 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.8      0.47   4.2e+02      92     150 ..      90     128 ..      47     175 .. 0.46
   2 ?   10.8   0.0   0.00034       0.3      18      42 ..     264     288 ..     251     391 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.47
      AAA_11  92 Rvgneeeriseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeek........e 150
                 R+ ++e                             +++s e++   +++++++e++++        +
  CCD23595.1  90 RIFRSE----------------------------LQRLSHENNVMLEKIKDNKEKIKNnrqlpylvA 128
                 111111............................122222222222222222222222223333331 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00034
      AAA_11  18 eitliqGPPGtgKTktivellsqll 42 
                 + +l+ GPPGtgKT    +  +q +
  CCD23595.1 264 KGALMYGPPGTGKTLLARACAAQTN 288
                 4589**********88777777765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3       2.6   2.4e+03      56     130 ..      76     115 ..      49     140 .. 0.62
   2 ?   12.1   0.0   0.00021      0.19      13      90 ..     266     341 ..     260     434 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.6
      AAA_19  56 kelrerlaalgaeatTiHrlalldfddlltealelleeaeeekklqeee.llivDEfqdvdelqyrLlkallgekk 130
                 +el+                                    +++kl ++e  ++  E q ++   + +l++++++k+
  CCD23595.1  76 QELQ------------------------------------TRTKLLDNEiRIFRSELQRLSHENNVMLEKIKDNKE 115
                 3333....................................333333444456666666666666666666664444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00021
      AAA_19  13 llvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealel 90 
                  l+ ++pGtGKT + ++  a  +++    +++ l+  f g  ak +r++ a ++++a Ti  +   ++d + t+ +  
  CCD23595.1 266 ALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMFIGEGAKLVRDAFALAKEKAPTIIFI--DELDAIGTKRFDS 341
                 6789********9999999998888877779999999*************9999999999877..5555555444444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00025      0.23      27      70 ..     257     292 ..     248     344 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00025
       AAA_7  27 elllknkkpvllvGptGtGKtviikdllkkldkekylsltinfs 70 
                 el +++ k  l++Gp GtGKt++++ +  + +         +f 
  CCD23595.1 257 ELGIRAPKGALMYGPPGTGKTLLARACAAQTN--------ATFL 292
                 5667778899*************999887776........3333 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   3.3   0.00018      0.16      19      57 ..      74     112 ..      64     122 .. 0.88
   2 ?   -0.0   0.0       1.1   9.6e+02      17      32 ..     350     365 ..     343     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
  TolA_bind_tri  19 lllelqqqlealqqelreLRGqiEelqyqleqleerQrd 57 
                    +  elq++ + l +e+r  R ++++l+++++ ++e+ +d
     CCD23595.1  74 STQELQTRTKLLDNEIRIFRSELQRLSHENNVMLEKIKD 112
                    5689******************************99888 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.1
  TolA_bind_tri  17 sqlllelqqqlealqq 32 
                    ++++lel++ql+  ++
     CCD23595.1 350 QRTMLELLNQLDGFSS 365
                    5899*******97665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.7   1.5e+03     119     142 ..     121     147 ..     111     171 .. 0.72
   2 ?   10.4   0.1   0.00044       0.4       5      23 ..     266     286 ..     262     348 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.7
      AAA_24 119 qelrk...nvifiahektrkdedpege 142
                 ++l++   nv+ ++ +++ +d++++++
  CCD23595.1 121 RQLPYlvaNVVEVMDMDEIEDKENNES 147
                 445555559999999999998888877 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00044
      AAA_24   5 iliyGpsgiGKTtlakel..g 23 
                  l+yGp+g+GKT la+    +
  CCD23595.1 266 ALMYGPPGTGKTLLARACaaQ 286
                 589***********9987443 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.3    0.0058       5.2      54     134 ..      75     153 ..      48     255 .. 0.78
   2 ?    1.6   0.0      0.36   3.2e+02      47     109 ..     399     461 ..     388     479 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0058
        Fez1  54 ikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaalesdeakaqrqeaeeleelk 134
                 ++el+++++  ++e+    +elqr ++e++++ ek++  +e++k+ r+ l  l ++   +++++de + +++++++++  +
  CCD23595.1  75 TQELQTRTKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQ-LPYLVAN-VVEVMDMDEIEDKENNESTTQGGN 153
                 5666666777778899999**************************999.4443333.333445555555555544444433 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.36
        Fez1  47 leekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsle 109
                 l +++++++ l+ ++++ t++++   +el+r+++e +  + k+ ++e+ +  lr+  s++++e
  CCD23595.1 399 LPTEDSRAQILQIHSRKMTTDNDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHE 461
                 66778888889999999999999999**********999999999999999999977775543 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.0    0.0032       2.8       6      42 ..      76     112 ..      66     124 .. 0.76
   2 ?   -0.6   0.1       1.6   1.4e+03      17      44 ..     404     431 ..     402     440 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0032
  Cep57_CLD_2   6 ktLqnrLdsltrklqvheeelkrLnkERdsalrqLgv 42 
                  ++Lq+r + l+ ++ +  +el+rL++E++ +l ++ +
   CCD23595.1  76 QELQTRTKLLDNEIRIFRSELQRLSHENNVMLEKIKD 112
                  456888888888888888**************99976 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.6
  Cep57_CLD_2  17 rklqvheeelkrLnkERdsalrqLgvAy 44 
                  +++q+ +++++++ +++d   + L +  
   CCD23595.1 404 SRAQILQIHSRKMTTDNDINWQELARST 431
                  688999**********998887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1049  (0.0585086); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 3420.55
//
Query:       CCD23596.1  [L=435]
Description: hypothetical protein NDAI_0B05630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-29  100.1  10.4      3e-08   34.2   0.2    6.2  6  WD40         WD domain, G-beta repeat
    5.9e-10   39.3   0.1      0.015   15.6   0.0    4.1  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   4.6e-08   0.00041       4      38 .]     135     171 ..     132     171 .. 0.89
   2 !   34.2   0.2   3.4e-12     3e-08       2      38 .]     177     214 ..     176     214 .. 0.94
   3 !   25.1   0.0   2.4e-09   2.2e-05       4      37 ..     266     300 ..     263     301 .. 0.93
   4 ?   -0.8   0.0      0.37   3.3e+03      17      34 ..     323     340 ..     312     341 .. 0.80
   5 !   18.4   0.3   3.4e-07     0.003       4      38 .]     354     391 ..     351     391 .. 0.87
   6 ?    2.1   0.0     0.044     4e+02      11      36 ..     407     433 ..     396     435 .] 0.69

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 4.6e-08
                 EEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 
                  +tl+GH ++ tsl+  ++ g++++sG+ D+ v+iWd
  CCD23596.1 135 KYTLSGHiNGTTSLKlLPKTGHLILSGGNDNVVKIWD 171
                 5799***98889**98888888899***********9 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 3.4e-12
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + lr ++GH + + sl+f++dg+ ++s+s D+tv+iWd
  CCD23596.1 177 KVLRDYKGHsKAIKSLCFNDDGTKFISSSFDRTVKIWD 214
                 67899****888**************9999*******9 PP

  == domain 3  score: 25.1 bits;  conditional E-value: 2.4e-09
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +++++ H ss+ +l + pdg+ ++s+s+D+tvr+W
  CCD23596.1 266 VQVYDHHmSSILALEYFPDGSKFISSSEDKTVRLW 300
                 5789999**************************** PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.37
                 EEETTSSEEEEEETTSEE CS
        WD40  17 afspdgawlasGsdDgtv 34 
                 + +p+ +++++ s+D+t+
  CCD23596.1 323 SIHPEEKYFCTQSMDNTI 340
                 46999999976588*998 PP

  == domain 5  score: 18.4 bits;  conditional E-value: 3.4e-07
                 EEEEESS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ss...vtslafspdgawlasGsdDgtvriWd 38 
                  ++++G+ s    + ++ fs+dg++++sG+ + +v+iWd
  CCD23596.1 354 KKVFKGQtSAgygI-GITFSSDGRYICSGDAKSKVHIWD 391
                 67899995447899.9*************99*******9 PP

  == domain 6  score: 2.1 bits;  conditional E-value: 0.044
                 SSEEEEEEETTSSE.EEEEETTSEEEE CS
        WD40  11 ssvtslafspdgaw.lasGsdDgtvri 36 
                 +++t + ++p  +  +++++  g++++
  CCD23596.1 407 KPITQVEWNPQETSkVVCSGASGKIYV 433
                 589***988888886444445888876 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.3e-06      0.03      27      77 ..     167     225 ..     148     235 .. 0.86
   2 !    3.6   0.0    0.0094        85      35      76 ..     270     311 ..     246     345 .. 0.84
   3 !   15.6   0.0   1.6e-06     0.015      28      90 ..     355     415 ..     348     417 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.3e-06
  ANAPC4_WD40  27 qrvwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                   ++w++        + +++++ ++sL+++ dg+ +  +  d +v++ d esg + ++l+
   CCD23596.1 167 VKIWDFyhdrkvlrDYKGHSKAIKSLCFNDDGTKFISSSFDRTVKIWDTESGSIQKKLR 225
                  577777777777777789999*******************************9988775 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0094
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  d++ s++ +L++ pdg+ +  + +d +vrl + +    ++++
   CCD23596.1 270 DHHMSSILALEYFPDGSKFISSSEDKTVRLWENQINIPIKQI 311
                  567789999********************9987766555555 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 1.6e-06
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +v+++  +++ +   ++ ++ dg+ ++ + ++++v++ d  + k+++++s+   k +t ++W+
   CCD23596.1 355 KVFKG--QTSAGYGIGITFSSDGRYICSGDAKSKVHIWDWTTIKLLSTISIPGGKPITQVEWN 415
                  66666..23333334799************************************9*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       468  (0.026103); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3051.55
//
Query:       CCD23597.1  [L=669]
Description: hypothetical protein NDAI_0B05640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-13   50.7  19.7    1.4e-13   50.4   4.6    3.5  4  NUC153    NUC153 domain


Domain annotation for each model (and alignments):
>> NUC153  NUC153 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.3   1.8e-05      0.32       1      13 [.      13      25 ..      13      26 .. 0.97
   2 ?   -1.9   0.6      0.17     3e+03       1       6 [.      38      43 ..      38      43 .. 0.87
   3 ?   -2.3   0.0      0.23   4.2e+03      14      21 ..     449     456 ..     449     456 .. 0.88
   4 !   50.4   4.6   7.8e-18   1.4e-13       1      29 []     582     610 ..     582     610 .. 0.99

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.8e-05
      NUC153  1 DpRFkalFedhdF 13
                DpRF+++++d+ F
  CCD23597.1 13 DPRFAKIYNDPKF 25
                9**********99 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.17
      NUC153  1 DpRFka 6 
                D+RF++
  CCD23597.1 38 DDRFSK 43
                9***85 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.23
      NUC153  14 aIDptspe 21 
                 a+D++sp+
  CCD23597.1 449 ALDENSPK 456
                 79****96 PP

  == domain 4  score: 50.4 bits;  conditional E-value: 7.8e-18
      NUC153   1 DpRFkalFedhdFaIDptspeFkktnpmk 29 
                 DpRFk++FedhdFaIDp+ peFk t++mk
  CCD23597.1 582 DPRFKEVFEDHDFAIDPSRPEFKETKAMK 610
                 9***************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3352  (0.18696); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                       141  (0.00786435); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.21u 0.28s 00:00:01.49 Elapsed: 00:00:00.50
# Mc/sec: 4021.95
//
Query:       CCD23598.1  [L=462]
Description: hypothetical protein NDAI_0B05650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-70  234.5   3.8      7e-70  234.5   3.8    2.3  2  RIO1      RIO1 family
  ------ inclusion threshold ------
      0.029   14.3   0.1        1.6    8.6   0.0    2.4  2  APH       Phosphotransferase enzyme family
      0.042   14.0  36.8      0.099   12.7  27.9    2.2  2  YL1       YL1 nuclear protein
      0.044   13.2   0.5      0.087   12.2   0.2    1.6  2  DUF4159   Domain of unknown function (DUF4159)
        4.6    5.4  29.0          1    7.6  22.7    2.0  2  CDC45     CDC45-like protein


Domain annotation for each model (and alignments):
>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.5   3.8   1.9e-73     7e-70       7     186 ..      99     282 ..      53     284 .. 0.95
   2 ?   -4.5   4.9       3.8   1.4e+04      22      50 ..     420     449 ..     401     460 .. 0.45

  Alignments for each domain:
  == domain 1  score: 234.5 bits;  conditional E-value: 1.9e-73
                 ETTTEEEEEEEE-S---SS-HHHHCTTTSTTSTCG--GS-HHHHHHHHHHHHHHHHHHHHHTT.--S--EEEEETTEEEEE--E.ETTEEGGBHHHCG. CS
        RIO1   7 sedgkevaiKiyktstteFkkrkkyvsgekrfkdrksktnprklvklwaekEfrnLkrleeag.vpvPkpielkrhvlvmefig.edgvaapklkdve. 102
                 ++d+ke+a+Ki+kts+++Fk+r++yv+ge+rf++++s++nprk++k+waekEfrnL+r+++++ +pvPkpie+k++vl+mef++  dg+a p+l+d++ 
  CCD23598.1  99 QKDKKEYAVKIFKTSILVFKDRERYVDGEFRFRNSRSQHNPRKMIKIWAEKEFRNLRRIYQSNvIPVPKPIEVKNNVLIMEFLNrGDGFASPRLRDYPy 197
                 46778********************************************************9989*******************99************8 PP

                 -.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE--GTTEEETTSTTHHHHHHHHHHHHHHHHHTTC-----HH CS
        RIO1 103 e.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkvviIDvsQaveldhpnalefLerDveniikfFrrkgvekvdee 186
                 + +ee  ++y+  +++mr +y+ ++lvHaDLSeyN+l++++ ++iIDvsQ+ve++hp++l+fL++D++ni+ +F r+g++++ e+
  CCD23598.1 198 KdREEVIHYYHIAIAYMRLMYQVCRLVHADLSEYNILIHNNLMYIIDVSQSVEPEHPMSLDFLRMDIKNINMYFDRMGIDIFPER 282
                 78999999***********************************************************************988766 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 3.8
                 --SS-HHHHCTTTSTT.STCG--GS-HHHH CS
        RIO1  22 tteFkkrkkyvsgekr.fkdrksktnprkl 50 
                   e k+ kk+++++++  k++k kt+ +k 
  CCD23598.1 420 KHEDKDEKKQRKQDAKdAKREKRKTKVKKH 449
                 333333333222222202222233333333 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.02        73      37      60 ..     147     171 ..      95     202 .. 0.76
   2 ?    8.6   0.0   0.00044       1.6     167     192 ..     222     244 ..     213     248 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHTT-.B--B-CTT CS
         APH  37 irrevallrlLakagv.pvPevlag 60 
                 +++e++ lr + +++v pvP+++  
  CCD23598.1 147 AEKEFRNLRRIYQSNViPVPKPIEV 171
                 3689999***************984 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00044
                 EEE-SS-SGGGEEEC..TTEEEEE-- CS
         APH 167 vllHgDlhpgNllvdpddgrvtGviD 192
                 +l+H Dl+  N+l++  ++ + ++iD
  CCD23598.1 222 RLVHADLSEYNILIH--NNLM-YIID 244
                 69*************..8887.9**9 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   1.6     0.002       7.1      49      90 ..      60     104 ..       8     156 .. 0.68
   2 ?   12.7  27.9   2.8e-05     0.099      11     110 ..     357     455 ..     348     462 .] 0.59

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.002
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
         YL1  49 sDsdfdsdeedee.sdeeedeeegekelerqerkkr..kkekkkr 90 
                  Ds++ sd+ de+ +d++ dee+  ++le q   ++   +++kk+
  CCD23598.1  60 GDSKLHSDDTDEPhDDNNIDEEALKEKLETQINPEEtrLQKDKKE 104
                 699999999999853344444444444553333222111112222 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.8e-05
                 xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         YL1  11 lkkLleqeeeedelel..lFaEeedDeefeseeeeeeeensDsdf.dsdeedeesdeeedeeegekelerqerkkrkkekkkrkaqkkkskkkkkkqkk 106
                 lk+L+++ + e+++ +   F+ ++dDee + +++++ee+ +  d  +sd++de  ++ee+ ++g k  ++ e+k+rk+  k +k++k+  k+k kk++k
  CCD23598.1 357 LKSLIAHDN-EKNFSAaeQFEIQDDDEEIVLSDNNDEED-TSADSdESDSDDEGYESEEKVLKGKKHEDKDEKKQRKQDAKDAKREKR--KTKVKKHIK 451
                 789997776.7777776778889******9999888865.333331355555557888888888888778888888333333332222..222222222 PP

                 xxxx RF
         YL1 107 kkkk 110
                 kk +
  CCD23598.1 452 KKLV 455
                 2222 PP

>> DUF4159  Domain of unknown function (DUF4159)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.8   6.3e+03      91     117 ..     147     174 ..     145     186 .. 0.65
   2 ?   12.2   0.2   2.4e-05     0.087      65     185 ..     259     405 ..     252     418 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.8
                 SSHHHHHHHHHHHHH.S-TTS-EE--TT CS
     DUF4159  91 gaaeaerlrrelkkv.fPekpleelpad 117
                 +++e ++lrr+ ++  +P  ++ e+ ++
  CCD23598.1 147 AEKEFRNLRRIYQSNvIPVPKPIEVKNN 174
                 5677788888887544885555555444 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.4e-05
                 ---HHHHHHHHHHHTT-EEEEEE-..............SSSSHHHHHHHHHHHHHS-TTS-EE--TTSGGGGSSS--S.......S--SS----SS... CS
     DUF4159  65 fssaeakaLraYlrkGGfLliDdr..............gygaaeaerlrrelkkvfPekpleelpadhvlfksfyllk..eglpkefpgryagsev... 144
                 f   ++k+++ Y ++ G+ ++ +r               ++ +++++lr+ ++k +P k+  + +a++++f+s yl++  egl ++   ry+ ++    
  CCD23598.1 259 FLRMDIKNINMYFDRMGIDIFPERvifqfiisetldkfTGNYNDYNDLRDYVAKTLPIKKTAQDEAEDEIFRSLYLVRnlEGLEERDFDRYTDGKFdll 357
                 66667788888888888877777778888888888887666778888*******************************444477744556666666789 PP

                 .......................ETTEEEEEEETT-HHHHH-B-T-S--T CS
     DUF4159 145 .........adekrpqargifedndrvsvvyignnDlgdaWevdellpsd 185
                          +  + + a+++  ++d   +v++ nnD  d  ++++++ sd
  CCD23598.1 358 ksliahdneK--NFSAAEQFEIQDDDEEIVLSDNNDEEDTSADSDESDSD 405
                 9999966322..22344444444455555555588888887777755444 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.4     0.017        61     121     181 ..      53     118 ..      38     165 .. 0.41
   2 ?    7.6  22.7   0.00028         1     121     208 ..     367     457 ..     349     462 .] 0.43

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.017
       CDC45 121 eayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrk...sksdeeee.........s 181
                 + y+a   +++ +++d  ++e +dd++ +ee  +e+ e++ + ee++ +k+k   +      +         +
  CCD23598.1  53 NVYHAFAGDSKLHSDD--TDEPHDDNNIDEEALKEKLETQINPEETRLQKDKkeyAV-----KifktsilvfK 118
                 4455555555444444..333333333333333333333333333332222211211.....12223345542 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00028
       CDC45 121 eayealeeeeesdeede...eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee.sddddersrkrrrsepsakklrrqlkke 208
                 +++ a e+ e +d+++e   +++++++d++++++e+++d+e +e++e+  k k+++++de+++ ++d+++ +r++r+++  +k+ +++l k+
  CCD23598.1 367 KNFSAAEQFEIQDDDEEivlSDNNDEEDTSADSDESDSDDEGYESEEKVLKGKKHEDKDEKKQrKQDAKDAKREKRKTK-VKKHIKKKLVKK 457
                 2333333333333333367644444444444444444555555555444444444333333333444444444444444.344444443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2304  (0.128507); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 3163.29
//
Query:       CCD23599.1  [L=161]
Description: hypothetical protein NDAI_0B05660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-19   70.4  14.6    1.2e-11   44.8   8.6    2.1  2  Kei1      Inositolphosphorylceramide synthase subunit Kei1


Domain annotation for each model (and alignments):
>> Kei1  Inositolphosphorylceramide synthase subunit Kei1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   8.6   6.9e-16   1.2e-11      42     105 ..       1      64 [.       1      72 [. 0.86
   2 !   31.2   0.2     1e-11   1.8e-07     132     188 ..      64     120 ..      58     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 6.9e-16
        Kei1  42 lqlsmylySllvlvllalllphirkesplkilllavlYllDtvistaytvlFavdWflvleehd 105
                 +q+++yl+S+++l+++a +l +i+k++ l    + v+++lDt++++++t++F+++Wf   e ++
  CCD23599.1   1 MQWVAYLWSIFCLIIFAQGLYQIHKPTLLTFSQITVFFTLDTLFTCFFTLWFTAQWFQGSEGES 64 
                 7**************************66666666**********************9854444 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 1e-11
        Kei1 132 saasatsasvsaatssslasavlqqEsaasiiiivllllvriYfalvllsyarqllk 188
                 sa ++++  ++++ts +++ a+ ++E++++++i+++ l++r+Yf+ +l+s++++ll 
  CCD23599.1  64 SAVQTSTGVQKRDTSLASQGATAGYEYFVTMLITFITLTFRFYFNCILASFVQELLS 120
                 4556667778888899**************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       905  (0.0504769); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1162.88
//
Query:       CCD23600.1  [L=318]
Description: hypothetical protein NDAI_0B05670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-43  146.9   0.0    6.4e-41  140.5   0.0    2.0  1  Aldo_ket_red   Aldo/keto reductase family
  ------ inclusion threshold ------
      0.056   13.7   0.4         12    6.2   0.0    3.8  5  SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate bi
       0.14   12.5   0.0        1.7    9.1   0.0    2.6  3  BHD_3          Rad4 beta-hairpin domain 3


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5   0.0   1.1e-44   6.4e-41       2     293 ..      22     298 ..      21     299 .. 0.94

  Alignments for each domain:
  == domain 1  score: 140.5 bits;  conditional E-value: 1.1e-44
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98 
                   +glGtw+      +  ++a+  + +al++G++++DtA +Y    +e  +G+a+ +s+++r e+++++K+        ++ ++ +   +l+++lkrLg
    CCD23600.1  22 IGLGTWRS-----VGTNDAYHSVIAALKNGYRHIDTAAIY---GNEAQVGKAIRDSGVPRNEIFVTSKL--------WCAQTHDPKLALNQTLKRLG 102
                   89999955.....5579***********************...9*************************........55666666779********* PP

                   -S-EEEEEE-S--TTS-................................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH..HHTTT--EEEEE- CS
  Aldo_ket_red  99 tdyvDllllHrpdpslp...............................sieevldaleelvkeGkiraiGvSnfsveqleka..kkkkkvkivavqv 162
                   +dy+Dl+l+H+p    p                               +  ++++ +++l ++Gk +a+GvSnfs+  l  +   ++ kv ++a+q+
    CCD23600.1 103 LDYIDLYLMHWPVTFNPrsikdedgsgdafmtiptdsngnvdvemdtwNFIKTWELMQHLPESGKTKAVGVSNFSINNLNDLlaASTTKVVPAANQI 199
                   **********************************************************************************9988888899***** PP

                   B-BTT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SE CS
  Aldo_ket_red 163 eynllreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgi 259
                   e ++l  l++++ll++ck+k++ + aysp+g+          ++                    +++e+++++ak+ ++++ q+++++ + q ++ +
    CCD23600.1 200 ELHPL--LAQNELLQYCKEKNILVEAYSPFGSIN--------AP-------------------ILKDETINAIAKKLDIQVGQVVMSWHI-QRGGYV 266
                   *****..***********************9322........22...................3789***********************.79999* PP

                   EEE--SSHHHHHHHHGGGG----HHHHHHHHHHH CS
  Aldo_ket_red 260 vipgasnieqlednldalelklseeevaeldell 293
                   v+p++   e++ +n +++  +l++e+++++++l+
    CCD23600.1 267 VLPKSVHEERIIANRKVV--TLPDEDFQAINNLV 298
                   ******************..**********9985 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.002        12       6      24 ..      37      56 ..      36      76 .. 0.76
   2 ?    0.4   0.0      0.13   8.1e+02      19      46 ..      80     105 ..      65     107 .. 0.82
   3 ?    1.7   0.0     0.053   3.2e+02      33      47 ..     208     222 ..     195     226 .. 0.82
   4 ?   -1.9   0.0      0.72   4.3e+03      33      49 ..     238     254 ..     235     258 .. 0.79
   5 ?   -3.2   0.0       1.8   1.1e+04      29      43 ..     288     302 ..     278     309 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.002
  SpoU_sub_bind  6 haVleaLksgrr.iekllvt 24
                   h+V++aLk+g r i++  + 
     CCD23600.1 37 HSVIAALKNGYRhIDTAAIY 56
                   9*********8888776544 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.13
  SpoU_sub_bind  19 ekllvtegradkrleellklakkrgikv 46 
                     kl+++++ +d++l  l + +k++g  +
     CCD23600.1  80 SKLWCAQT-HDPKL-ALNQTLKRLGLDY 105
                    58999999.99994.8888888888766 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.053
  SpoU_sub_bind  33 eellklakkrgikve 47 
                    +ell+++k+++i ve
     CCD23600.1 208 NELLQYCKEKNILVE 222
                    49**********997 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.72
  SpoU_sub_bind  33 eellklakkrgikvelv 49 
                    e++ + akk++i+v +v
     CCD23600.1 238 ETINAIAKKLDIQVGQV 254
                    67889999999999766 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 1.8
  SpoU_sub_bind  29 dkrleellklakkrg 43 
                    d++++ + +l k++g
     CCD23600.1 288 DEDFQAINNLVKEKG 302
                    566777777777775 PP

>> BHD_3  Rad4 beta-hairpin domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.85   5.1e+03      16      41 ..      70     106 ..      65     107 .. 0.58
   2 ?   -0.6   0.0      0.31   1.8e+03       1      11 [.     135     145 ..     135     150 .. 0.87
   3 ?    9.1   0.0   0.00028       1.7      25      53 ..     236     263 ..     212     290 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.85
                 GS-TTEEEE...........E-TTHHHHHHHCT---E CS
       BHD_3  16 mlPegavhi...........slkgaakaakklgidya 41 
                  +P++ +++           ++  ++++ k+lg dy 
  CCD23600.1  70 GVPRNEIFVtsklwcaqthdPKLALNQTLKRLGLDYI 106
                 5677777774444444443333556677777888875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.31
                 ----TTS-EE- CS
       BHD_3   1 vPkNeygniei 11 
                 +P+++ gn+++
  CCD23600.1 135 IPTDSNGNVDV 145
                 89********8 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00028
                 E-TTHHHHHHHCT---EEEEEEEEE-SS- CS
       BHD_3  25 slkgaakaakklgidyapAvvGFefkgrr 53 
                 + ++++ +akkl+i+  ++v+++  + r 
  CCD23600.1 236 KDETINAIAKKLDIQVGQVVMSWHIQ-RG 263
                 568899*****************998.32 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2315.76
//
Query:       CCD23601.1  [L=856]
Description: hypothetical protein NDAI_0B05680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-05   25.7   0.1    3.1e-05   24.2   0.1    1.8  1  FHA          FHA domain
  ------ inclusion threshold ------
       0.12   12.8   0.9        7.4    7.1   0.0    2.5  2  GlutR_dimer  Glutamyl-tRNAGlu reductase, dimerisation domain


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   3.5e-09   3.1e-05       1      40 [.      28      67 ..      28      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.5e-09
                EEEESSTTSSEETT.STTSTTTEEEEEEETTCEEEEEEEES CS
         FHA  1 vtiGRssdcdivld.dpsiSrkHalikfdkgsgkvyleDlg 40
                ++iGRss++ + ++ d+siSr+H +ik++++ g+++l++ g
  CCD23601.1 28 YSIGRSSKNPLSIKnDKSISRQHITIKWEPS-GQLHLVNQG 67
                79************7799************9.999998866 PP

>> GlutR_dimer  Glutamyl-tRNAGlu reductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0   0.00082       7.4      35      80 ..     425     475 ..     422     483 .. 0.79
   2 ?    3.5   0.2     0.011        97      27      61 ..     539     576 ..     525     604 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00082
                  HHHHHHHHHHHS-S.......--------TTHHHHHHHHHHHHHHHHHHSS CS
  GlutR_dimer  35 eireeeleralkkla.....ldgedreelekltrslvnkllheptarLkea 80 
                  +i+++++++ +++ a     + g dr+e  +lt + ++k ++ept+++ + 
   CCD23601.1 425 QIQQSQVNKSINEPAkdiysIGGSDRKETAALTYATIDKHMQEPTQQIDDI 475
                  56666666666555555558999***********************99765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.011
                  HHHHHHHHHHHHHHHHHHHS-S...----..----TTH CS
  GlutR_dimer  27 kalrekaeeireeeleralkkla.ldged..reelekl 61 
                  k++ e +++i+++e++r+++ +a +d e+  +++++++
   CCD23601.1 539 KSMVETIQDIKNREVTRLQSSIAhVDAEEltEDAINEF 576
                  77889999**************9655544212224444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1392  (0.0776396); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5873.25
//
Query:       CCD23602.1  [L=423]
Description: hypothetical protein NDAI_0B05690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0012   19.0   0.0     0.0028   17.8   0.0    1.6  1  RAI1      RAI1 like PD-(D/E)XK nuclease


Domain annotation for each model (and alignments):
>> RAI1  RAI1 like PD-(D/E)XK nuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.5e-07    0.0028      14      62 ..     280     326 ..     233     329 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.5e-07
                 SGGGEEEEEEEE---SHHHHHHHHHHHHHHHHHHHHHT--EEEEEEE-T CS
        RAI1  14 ksehyvELKTskkiknekqlekferKllkfWaQSfLlGiprIvvGfRdd 62 
                  ++ + E+K+ +++  + + ++ +rKllk W+Q  ++    I +G Rd 
  CCD23602.1 280 VNKCFTEMKCFARL--KMNNHNHRRKLLKAWVQTGVIPNSDILIGIRDP 326
                 567899******99..55557999***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3021.52
//
Query:       CCD23603.1  [L=104]
Description: hypothetical protein NDAI_0B05700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0018   18.6   0.0     0.0022   18.3   0.0    1.1  1  YCII      YCII-related domain


Domain annotation for each model (and alignments):
>> YCII  YCII-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.3e-07    0.0022       2      87 ..       3      86 ..       2      95 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.3e-07
                EEEEEEEE-TTGHHHHHHHHHHHHHHHHHHHHTTGEEEEEEEECSCSSSSCGGCEEEEEEEEEESSHHHHHHHHHT-HHHHTTEEE CS
        YCII  2 lyvilaydkpasleeraallaahlayleelkkeGvllaaGpklvidGpfaetkeqlgGfyiveaadldeaieiaardPfveaGlve 87
                 ++++++dk++  + r a   +h a   +l ++G+++++G+  +   +  ++  + g+ + v a++ +e+ e++++d f+++G++ 
  CCD23603.1  3 EWCVIINDKKG--SDRSAFNSQHFAGIPALVEQGKVVCGGAIYNEPTEEGGNPTVAGSHLQVVADTKEEVMELVKKDIFAKEGIWD 86
                57899999999..689***********************76655555555555689***************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 777.79
//
Query:       CCD23604.1  [L=563]
Description: hypothetical protein NDAI_0B05710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-70  238.3   7.4    1.7e-70  238.3   7.4    1.5  2  Glyco_hydro_18  Glycosyl hydrolases family 18
  ------ inclusion threshold ------
       0.02   15.8   0.1      0.054   14.5   0.1    1.6  1  DUF4834         Domain of unknown function (DUF4834)
      0.043   13.4   0.3      0.076   12.6   0.3    1.4  1  Trimer_CC       Trimerisation motif
      0.045   12.5   0.0      0.067   11.9   0.0    1.1  1  Folate_carrier  Reduced folate carrier
      0.074   12.8   0.4       0.14   11.9   0.4    1.4  1  Sclerostin      Sclerostin (SOST)


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.4       1.4   5.1e+03     232     252 ..      48      86 ..      32      91 .. 0.58
   2 !  238.3   7.4   4.7e-74   1.7e-70       3     312 .]      96     501 ..      94     501 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.4
                     EEESSSSSS..................TSTTTEEEHHHH CS
                     xxxxxxxxx..................xxxxxxxxxxxx RF
  Glyco_hydro_18 232 walvsgadn..................tkeegvlsykel 252
                      +++++++n                   +e+++++y++l
      CCD23604.1  48 NNNNNNNNNnnnnddgnkkgqhhshlfPQENDIVNYPKL 86 
                     333333222455666667777777777777777777765 PP

  == domain 2  score: 238.3 bits;  conditional E-value: 4.7e-74
                     EEEEEGGGGGSSGC.....SHTTTESEEEEEEEEEEETTTEEEESS.TTHH...........................................H CS
                     xxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx...........................................x RF
  Glyco_hydro_18   3 vgYysswesygnny.....lpsaklthiiyaFakidgengkvvvsd.wedl...........................................g 48 
                      +Yyssw+ y+ +y     ++++k+th+ y+F+ ++g++g v+ sd w+dl                                           g
      CCD23604.1  96 GVYYSSWSPYKPRYhfphdIDLTKITHVYYSFFLVNGATGDVTCSDeWSDLkmdlykplslklntlhqndkvlhdknktrlnetiekmkkqlplG 190
                     68********77544577888**********************************************************************9999 PP

                     HHHHHHHHHHHTSTT-EEEEEEEETTTTTHHHHHHTSHHHHHHHHHHHHHHHHHCT-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHHHHHH.. CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Glyco_hydro_18  49 nfeqlkklkkkknpgvkvllsiGGwtdssgfslaastdasrkkfadsvvsllrkygfDGiDidweypggnpedkenytallkelrealdkaka.. 141
                     ++ +l  lk k++ + k+++siGGw++ ++f +++ +d + ++f++s v+ + kygfDGiD+dwe+p+++  +   y +++++lr+ +dk+++  
      CCD23604.1 191 CVGELFYLK-KFQ-NFKLIMSIGGWSNREHFPSMVRDDNKLNQFIESSVEQMFKYGFDGIDLDWEFPEDDGFEPGKYLEIVQRLRKRMDKLEHdi 283
                     999******.666.8****************************************************99977799**************88889* PP

                     ..............HTSTTCEEEEEEESSHHHHHHHCHHHHHHHHTSEEEEETTTSSSTTSSBE--SS-SSB.............T......CSS CS
                     ..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............x......xxx RF
  Glyco_hydro_18 142 ..............tegkkllLsaavpasasdlskgydlpkiakylDyvnvmtYDfhgswdnvtghhaplyd.............a......sln 203
                                      +k++Ls+a pa   +l++  ++++++ky+Dy n+mtYD++g w+++tg+h +ly+             +       ln
      CCD23604.1 284 fqkskisphdydhdYHHPKFELSVATPAFIEKLNIL-PIKEMNKYIDYWNMMTYDYYGDWSEETGYHCNLYEggnngtinaqykhEhtssnkGLN 377
                     *************999999*************8666.************************************9999888777651566778*** PP

                     HHHHHHHHH.HTT--GGGEEEEEESEEEEEEESSSSSS................TSTTTEEEHHHHHHHHTEEEEEEEEETTTTEEEEEETT..E CS
                     xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
  Glyco_hydro_18 204 vdeavkeyl.kagvpakklvlGvpfygrawalvsgadn................tkeegvlsykelkellkkakakrkydskakapyvydge..e 279
                     +++a++++l +++v+++klvlG+++ygr+++ v+ ++n                + e+g++ y++l+ +    ++k+ +d++ ++ ++yd++  +
      CCD23604.1 378 ANDAINYMLyNNNVSSRKLVLGLAAYGRGFTKVKVNKNdelfinkkfdgvggasAGEPGMWLYNQLPIK----NSKEMFDPNYVSAFCYDPKtkT 468
                     ******999999**********************99999**************************9985....8999****************** PP

                     EEEE-SHHHHHHHHHHHHHTTESEEEEETGGGS CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 280 fvsyDdpksikakadyvkakglgGvmiWsldqD 312
                     fv+yD+ +++k ka+yv+++ l+G ++W+ ++D
      CCD23604.1 469 FVGYDNVDTMKVKAKYVQDRHLAGGFWWESCGD 501
                     *****************************9887 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   1.5e-05     0.054      10      66 ..      12      67 ..       6      85 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
     DUF4834 10 fiiailviglsilsvilrtvfglgsrkkssksaqkqfgnstnsnqqksqsrsetkee 66
                f+i++++i +++ + + + +f   + k  +++++++++n++n+n+++++++ ++k +
  CCD23604.1 12 FLILLAIICFILQMCLTKLFFNSNKEKIVTDHYKNNNNNNNNNNNNNNNDDGNKK-G 67
                4555555555555555555666444444444444444444444433333332222.2 PP

>> Trimer_CC  Trimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   2.1e-05     0.076      34      52 .]     268     286 ..     264     286 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHHHHHHHHHH- CS
   Trimer_CC  34 tVQelQkRLDrLEetvqaK 52 
                 +VQ l kR+D+LE  + +K
  CCD23604.1 268 IVQRLRKRMDKLEHDIFQK 286
                 8************999766 PP

>> Folate_carrier  Reduced folate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.9e-05     0.067     169     225 ..      11      66 ..       3      87 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.9e-05
  Folate_carrier 169 asvvvalllslfLprpkkslffkkkeaaskkdekseeeseeseeeenekeeeeekss 225
                      ++++  ++ ++L++  ++lff+++++++ +d+ ++++++++++++n+++++ +k +
      CCD23604.1  11 RFLILLAIICFILQMCLTKLFFNSNKEKIVTDHYKNNNNNNNNNNNNNNNDDGNK-K 66 
                     56666678999**************777666665555553333333333332222.2 PP

>> Sclerostin  Sclerostin (SOST)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   3.8e-05      0.14       4      57 ..      14      70 ..      11     104 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.8e-05
                XXXXXXXXXXXXXX..XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Sclerostin  4 sllpllcllvksal..afkndate.vlyshvekpvqepennstlnrarnGGrrpess 57
                 ll ++c++++ +l   f n   e +++ h +++ ++++nn+  n+  +G ++ +++
  CCD23604.1 14 ILLAIICFILQMCLtkLFFNSNKEkIVTDHYKNNNNNNNNNNNNNNNDDGNKKGQHH 70
                47889********96635555555166777777777888888888888887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1129  (0.0629706); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4032.49
//
Query:       CCD23605.1  [L=365]
Description: hypothetical protein NDAI_0B05720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-66  223.1   0.0    4.4e-66  222.8   0.0    1.1  1  GPP34     Golgi phosphoprotein 3 (GPP34)


Domain annotation for each model (and alignments):
>> GPP34  Golgi phosphoprotein 3 (GPP34)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.8   0.0   2.5e-70   4.4e-66       1     188 [.      89     313 ..      89     341 .. 0.94

  Alignments for each domain:
  == domain 1  score: 222.8 bits;  conditional E-value: 2.5e-70
       GPP34   1 LaeellLLalddekgrlsfandnlsyaLaGAiLiELalrgriavdk........eggrvv.vidsrptgdplldealklikaserprsvktwvdlls.. 88 
                 L+ee+lL++l+d++g+lsf+ndn+syaL+G+iLiELalrg+i++ +        +++r++ v d+++tg++llde l+l+k++e+  ++++w+dlls  
  CCD23605.1  89 LMEEVLLMGLRDKEGYLSFWNDNISYALRGCILIELALRGKIRILDdsarkrfdLSERLIeVKDGSKTGEVLLDETLQLMKNDEP-LTIANWIDLLSge 186
                 8*******************************************999**********************************7766.************* PP

       GPP34  89 ...........ksvrervakgLvdkGilrtekrrflglfdmtthpvadtaakeavrrrvraaltsgepadp..............rtaaLvallaaagl 162
                            k+vrer+akgLvdkG+lrte+++f+ lfdm+thpv+d+++kea++rrv+++l+s++ + +              rt aL++ ++ a++
  CCD23605.1 187 twnimkinyqlKQVRERLAKGLVDKGVLRTEMKNFF-LFDMATHPVTDSSCKEAIKRRVLSVLVSRNMEFNyneyfpqntffkiiRTIALICGAYGANV 284
                 ************************************.******************************994456789999******************** PP

       GPP34 163 lenllpdl..eareaa.arakelleefae 188
                 len+l++l  e+ + a ara+el ++f++
  CCD23605.1 285 LENVLSSLdyEKSDNAiARADELIAQFSK 313
                 **********999999*********9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.20s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 3234.27
//
Query:       CCD23606.1  [L=317]
Description: hypothetical protein NDAI_0B05730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2297.64
//
Query:       CCD23607.1  [L=190]
Description: hypothetical protein NDAI_0B05740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-26   89.8   6.2    4.1e-08   32.2   0.4    4.4  4  EF-hand_1     EF hand
    1.1e-23   81.0   5.4    1.5e-06   27.6   0.5    4.9  5  EF-hand_6     EF-hand domain
    6.8e-23   80.9   9.2      1e-16   61.2   0.4    3.1  3  EF-hand_7     EF-hand domain pair
    2.2e-18   64.8   4.1    3.8e-05   23.0   0.5    3.7  3  EF-hand_5     EF hand
    9.4e-17   60.6  10.7    5.3e-07   29.4   0.8    3.7  4  EF-hand_8     EF-hand domain pair
    0.00029   20.7   5.8        2.1    8.4   0.2    3.4  3  EF-hand_4     Cytoskeletal-regulatory complex EF hand
     0.0011   19.2   0.4       0.03   14.6   0.1    2.5  2  EF-hand_9     EF-hand domain
     0.0055   17.0   2.0       0.25   11.7   0.2    3.1  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
  ------ inclusion threshold ------
      0.085   12.9   0.0       0.14   12.3   0.0    1.5  1  S10_plectin   Plectin/S10 domain
      0.094   12.5   0.1        4.3    7.2   0.0    3.2  4  EF-hand_13    EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.099   1.8e+02      15      27 ..      41      53 ..      40      55 .. 0.88
   2 !   26.7   0.7   1.3e-09   2.4e-06       5      28 ..      68      91 ..      64      92 .. 0.90
   3 !   28.6   0.0   3.3e-10   5.8e-07       2      28 ..     101     127 ..     100     128 .. 0.89
   4 !   32.2   0.4   2.3e-11   4.1e-08       2      24 ..     149     171 ..     148     174 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.099
                SEEEHHHHHHHHH CS
   EF-hand_1 15 GkIdfeEfkellk 27
                G++++++f+++ k
  CCD23607.1 41 GHLTRDDFVKIYK 53
                99*******9987 PP

  == domain 2  score: 26.7 bits;  conditional E-value: 1.3e-09
                HHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  5 iFrefDkDgdGkIdfeEfkellkk 28
                +F++fDkD +G+Idf+Ef+++l++
  CCD23607.1 68 LFSVFDKDDNGFIDFKEFITVLST 91
                7*******************9975 PP

  == domain 3  score: 28.6 bits;  conditional E-value: 3.3e-10
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 l ++F+++D ++dG+I+++E+++++++
  CCD23607.1 101 LVWAFQLYDLNHDGYITYDEMLTVVSS 127
                 5689*****************999875 PP

  == domain 4  score: 32.2 bits;  conditional E-value: 2.3e-11
                 HHHHHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfke 24 
                 +++iF+++DkD+dG+I+++Ef+e
  CCD23607.1 149 VDKIFSLMDKDQDGYITLDEFRE 171
                 79*******************98 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.1   5.6e+03      16      26 ..      21      31 ..      18      33 .. 0.76
   2 ?    4.8   0.0     0.018        33      15      28 ..      41      54 ..      39      60 .. 0.88
   3 !   27.6   0.5   8.5e-10   1.5e-06       3      28 ..      66      91 ..      64      98 .. 0.90
   4 !   22.0   0.0   5.6e-08    0.0001       5      27 ..     104     126 ..     104     133 .. 0.89
   5 !   24.8   0.2   7.1e-09   1.3e-05       2      24 ..     149     171 ..     148     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.1
   EF-hand_6 16 kidaeElrkal 26
                + d+ E++++ 
  CCD23607.1 21 YFDRREIQQWH 31
                56889999875 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.018
   EF-hand_6 15 GkidaeElrkalrk 28
                G++++++++k++++
  CCD23607.1 41 GHLTRDDFVKIYKQ 54
                99*********995 PP

  == domain 3  score: 27.6 bits;  conditional E-value: 8.5e-10
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrk 28
                +++F  fDkd++G+id++E++ +l++
  CCD23607.1 66 NHLFSVFDKDDNGFIDFKEFITVLST 91
                689*********************96 PP

  == domain 4  score: 22.0 bits;  conditional E-value: 5.6e-08
   EF-hand_6   5 aFklfDkdgdGkidaeElrkalr 27 
                 aF+l+D ++dG+i+++E+  + +
  CCD23607.1 104 AFQLYDLNHDGYITYDEMLTVVS 126
                 7****************998766 PP

  == domain 5  score: 24.8 bits;  conditional E-value: 7.1e-09
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrk 24 
                 ++++F l+Dkd dG+i+ +E+r 
  CCD23607.1 149 VDKIFSLMDKDQDGYITLDEFRE 171
                 5799*****************96 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1    0.0011         2      17      71 .]       6      53 ..       3      53 .. 0.79
   2 !   22.2   1.4   7.7e-08   0.00014      17      69 ..      41      88 ..      40      90 .. 0.87
   3 !   61.2   0.4   5.6e-20     1e-16       1      68 [.      98     171 ..      98     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0011
   EF-hand_7 17 gyldkeellrllrkifqgagegsklsdeelellfkefDtdk.dGvisfdEFlklyr 71
                 +l+k++l +l +      ++ ++  + e++++ k f  d+  G +++d+F+k+y+
  CCD23607.1  6 SKLSKDDLTSLKQ------STYFD--RREIQQWHKGFLRDCpQGHLTRDDFVKIYK 53
                5788888885555......66666..448*******9888867**********996 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 7.7e-08
   EF-hand_7 17 gyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkl 69
                g+l+++++ ++++++f     gs+  d+   +lf  fD+d++G i+f EF + 
  CCD23607.1 41 GHLTRDDFVKIYKQFF---PFGSP--DDFANHLFSVFDKDDNGFIDFKEFITV 88
                89*****999****97...44444..67899*******************875 PP

  == domain 3  score: 61.2 bits;  conditional E-value: 5.6e-20
   EF-hand_7   1 eeklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdee......lellfkefDtdkdGvisfdEFlk 68 
                 eekl +aF+++D ++dgy++++e+l ++ + + + g ++kl d+e      ++++f  +D+d+dG+i++dEF++
  CCD23607.1  98 EEKLVWAFQLYDLNHDGYITYDEMLTVVSSVYKMMGSMVKLNDDEatpqlrVDKIFSLMDKDQDGYITLDEFRE 171
                 68999******************888******9999999999999999999*********************97 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.8   2.1e-07   0.00038       2      24 ..      66      88 ..      65      89 .. 0.91
   2 !   20.4   0.0   1.4e-07   0.00025       4      25 .]     104     125 ..     101     125 .. 0.91
   3 !   23.0   0.5   2.1e-08   3.8e-05       2      23 ..     150     171 ..     149     173 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.1e-07
                HHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELktl 24
                +++F+ +D++  G+I++ E+ t+
  CCD23607.1 66 NHLFSVFDKDDNGFIDFKEFITV 88
                578*****************997 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.4e-07
                 HHHHH-SS-SSCE-HHHHHHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeELktlv 25 
                 +Fq  DlN+DG+I+ +E  t+v
  CCD23607.1 104 AFQLYDLNHDGYITYDEMLTVV 125
                 4****************99875 PP

  == domain 3  score: 23.0 bits;  conditional E-value: 2.1e-08
                 HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5   2 kdtFqaiDlNgDGkIskeELkt 23 
                 ++ F+ +D+++DG+I+ +E+++
  CCD23607.1 150 DKIFSLMDKDQDGYITLDEFRE 171
                 568*****************96 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.1   7.4e+03       4      30 ..       7      15 ..       3      16 .. 0.51
   2 !   29.4   0.8   2.9e-10   5.3e-07       2      52 ..      40      89 ..      39      92 .. 0.85
   3 !   13.7   0.0   2.3e-05     0.041      25      49 ..      98     122 ..      89     127 .. 0.86
   4 !   22.7   0.7   3.7e-08   6.7e-05      11      49 ..     129     170 ..     125     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.1
   EF-hand_8  4 kItreelrrilrilglkkglseeevdi 30
                k                  ls++++++
  CCD23607.1  7 K------------------LSKDDLTS 15
                3..................55555444 PP

  == domain 2  score: 29.4 bits;  conditional E-value: 2.9e-10
   EF-hand_8  2 kgkItreelrrilrilglkk...glseee.vdilfrefDtdgdGkisfeEFcvll 52
                +g +tr+++++i++     +     s+++ + +lf+ fD d++G i+f+EF+ +l
  CCD23607.1 40 QGHLTRDDFVKIYK-----QffpFGSPDDfANHLFSVFDKDDNGFIDFKEFITVL 89
                6889*******993.....34444688888*********************9865 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 2.3e-05
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFc 49 
                 ee++ + f + D+++dG+i+++E +
  CCD23607.1  98 EEKLVWAFQLYDLNHDGYITYDEML 122
                 6789999****************76 PP

  == domain 4  score: 22.7 bits;  conditional E-value: 3.7e-08
   EF-hand_8  11 rril.rilglkk.glseee.vdilfrefDtdgdGkisfeEFc 49 
                 ++++ ++++l++   +++  vd +f+++D d+dG+i+++EF 
  CCD23607.1 129 YKMMgSMVKLNDdEATPQLrVDKIFSLMDKDQDGYITLDEFR 170
                 5788888888888666666699*******************6 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2    0.0013       2.3      41      69 ..      61      89 ..      19      94 .. 0.73
   2 !    6.3   0.0    0.0049       8.8      42      78 ..      98     134 ..      88     146 .. 0.81
   3 !    8.4   0.2    0.0012       2.1      42      66 ..     146     170 ..     134     182 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0013
   EF-hand_4 41 eedklekiwdladidedgkldfeefciam 69
                ++d  ++++++ d d++g +df+ef+ ++
  CCD23607.1 61 PDDFANHLFSVFDKDDNGFIDFKEFITVL 89
                67778899999**************9765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0049
   EF-hand_4  42 edklekiwdladidedgkldfeefciamrlifdlvng 78 
                 e+kl   ++l d+++dg + ++e+  ++  ++ ++  
  CCD23607.1  98 EEKLVWAFQLYDLNHDGYITYDEMLTVVSSVYKMMGS 134
                 4667777899**************9999888888754 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0012
   EF-hand_4  42 edklekiwdladidedgkldfeefc 66 
                 + +++ki++l d d+dg + ++ef 
  CCD23607.1 146 QLRVDKIFSLMDKDQDGYITLDEFR 170
                 45689******************96 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.7e-05      0.03       2      64 ..      67     127 ..      66     129 .. 0.87
   2 ?    2.3   0.0      0.12   2.2e+02       2      56 ..     151     167 ..     134     171 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-05
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmre 64 
                  +F+v+D +  G +  ++ i++L  +    + e +L    +++D ++  + +  d  l+v++ 
  CCD23607.1  67 HLFSVFDKDDNGFIDFKEFITVLSTTSR-GTLEEKLVWAFQLYDLNHD-GYITYDEMLTVVSS 127
                 68*********************87666.9999999999999998887.99999998888765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.12
   EF-hand_9   2 tvFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdld 56 
                  +F++ D ++ G +++                                      d
  CCD23607.1 151 KIFSLMDKDQDGYITL--------------------------------------D 167
                 4666666666666655......................................3 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.29   5.1e+02      91     110 ..      66      85 ..       5      88 .. 0.69
   2 ?    0.4   0.0      0.44   7.9e+02      59     111 ..      68      86 ..      59      97 .. 0.64
   3 !   11.7   0.2   0.00014      0.25      52      86 ..      97     131 ..      89     172 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.29
  SPARC_Ca_bdg  91 kpflescDadkdkkislkEw 110
                   +++++  D d+++ i+ kE+
    CCD23607.1  66 NHLFSVFDKDDNGFIDFKEF 85 
                   45566666666666666666 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.44
  SPARC_Ca_bdg  59 kFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEwc 111
                    Fs +D++                                  +++ i+ kE++
    CCD23607.1  68 LFSVFDKD----------------------------------DNGFIDFKEFI 86 
                   45555555..................................55555555553 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.00014
  SPARC_Ca_bdg  52 ckepvawkFsklDtnsdkvlsksELaplraplvkl 86 
                    +e++ w F+  D n+d++++  E+  + +++ k+
    CCD23607.1  97 LEEKLVWAFQLYDLNHDGYITYDEMLTVVSSVYKM 131
                   67899*******************99888777665 PP

>> S10_plectin  Plectin/S10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.8e-05      0.14      39      80 ..      83     124 ..      45     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.8e-05
                  HHHHHHHHCCCCTSEEEEEETTEEEEEE-HHHHHHHHHHHXX CS
  S10_plectin  39 qvikalqSLksrgyvkeqfaWrhyYytLtneGieylreylhl 80 
                  + + ++ S +srg ++e+ +W +  y L+++G     e+l +
   CCD23607.1  83 KEFITVLSTTSRGTLEEKLVWAFQLYDLNHDGYITYDEMLTV 124
                  556678899***********************7776666665 PP

>> EF-hand_13  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.61   1.1e+03      15      30 ..      40      55 ..      32      57 .. 0.79
   2 ?   -0.6   0.0      0.64   1.1e+03       2      27 ..      64      89 ..      63      93 .. 0.78
   3 ?   -1.2   0.0         1   1.9e+03      63      75 ..     109     121 ..     102     133 .. 0.70
   4 ?    7.2   0.0    0.0024       4.3      55      79 ..     149     173 ..     144     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.61
  EF-hand_13 15 knyltredlkplvkel 30
                +  ltr+d++++ k++
  CCD23607.1 40 QGHLTRDDFVKIYKQF 55
                5679999999998876 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.64
  EF-hand_13  2 eaarlfrlLkkpgknyltredlkplv 27
                 a++lf++  k+++ ++  + ++ ++
  CCD23607.1 64 FANHLFSVFDKDDNGFIDFKEFITVL 89
                57789999999999999888887766 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1
  EF-hand_13  63 nrswsgkitlkel 75 
                 + +++g+it++e+
  CCD23607.1 109 DLNHDGYITYDEM 121
                 5567788888775 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0024
  EF-hand_13  55 iarifysvnrswsgkitlkelrksd 79 
                 + +if  +++ ++g+itl+e+r+++
  CCD23607.1 149 VDKIFSLMDKDQDGYITLDEFREGS 173
                 6789999**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.30s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1317.38
//
Query:       CCD23608.1  [L=297]
Description: hypothetical protein NDAI_0B05750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0046   16.6   0.0      0.012   15.3   0.0    1.6  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.4e-07     0.012      13     112 ..      95     187 ..      83     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.4e-07
  Acyltransferase  13 kgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRk.snaraagsleniselleegkl.vviFPEGtrs 104
                       +  ++v N qs lD l+l l+      +  + +++ ++  s  +    mrl++fi ++ + s  +++ s e++++l   ++    +F EGt+s
       CCD23608.1  95 MKSQLYVVNYQSSLDCLMLYLIS-----QGSCSFLVPDSDGS--I--YKMRLFKFICFTLNgSLNVTKYSKEKVQNLGALKNTvNFLFIEGTCS 179
                      56789******************.....899*****999444..3..446667776666640555555555555555444555589******** PP

  Acyltransferase 105 regellpf 112
                      +  ++lpf
       CCD23608.1 180 NGKSVLPF 187
                      ****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2241.08
//
Query:       CCD23609.1  [L=407]
Description: hypothetical protein NDAI_0B05760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-14   51.1   0.0    1.4e-13   50.6   0.0    1.2  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   7.9e-18   1.4e-13      12     132 ..      59     233 ..      48     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 7.9e-18
  Acyltransferase  12 e........kgpailvaNHqsylDvlllwlllyksngp...rnvviiakkellsi.pllgflmrllgfifidR..................... 72 
                      +        ++++ + +NH s +D++++w+++  + ++   + +++++++++++  ++lg +++l+++   +R                     
       CCD23609.1  59 KavqtaeneNRGIMTMMNHMSMVDDPTFWAAFPLRLYRqkeNIRWCLGAENICFQnKFLGYMFSLGQVLSTKRfgvgpfqgsidaairllspdd 152
                      34445555578999***************998666643466899*****************************999999999999999999999 PP

  Acyltransferase  73 ..............ksnaraagslenise.lleeg.klvviFPEGtrsre.....gellpfkkGlvrlaakakkgvpivPv 132
                                    +s +++++s + + + + +++  +v+++PEG +++       +++ fk+G+ r++++  k ++ivP+
       CCD23609.1 153 slesltwrpskginESLKQQQNSSSLTNPpIRRNKpSWVHVYPEGFVLQLhppysNSMRYFKWGITRMILESTKPPVIVPI 233
                      99999999999998888888888888888644444255*******7777666654666**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      597  (0.033298); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2883.31
//
Query:       CCD23610.1  [L=763]
Description: hypothetical protein NDAI_0B05770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.5e-100  336.4  14.2   1.5e-100  336.4  14.2    3.0  4  Kinesin      Kinesin motor domain
    1.5e-55  187.2   0.9    1.5e-55  187.2   0.9    2.5  3  Microtub_bd  Microtubule binding
  ------ inclusion threshold ------
      0.039   13.8  11.5          3    7.8   0.4    3.7  2  PKcGMP_CC    Coiled-coil N-terminus of cGMP-dependent protein


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.31   1.9e+03      27      65 ..      93     129 ..      63     162 .. 0.51
   2 ?   -5.3   5.1       2.2   1.3e+04     147     182 ..     186     232 ..     127     242 .. 0.53
   3 ?   -4.1   1.3      0.96   5.8e+03     143     183 ..     329     376 ..     292     392 .. 0.47
   4 !  336.4  14.2  2.5e-104  1.5e-100       2     331 ..     405     752 ..     404     754 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.31
                 EEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHH CS
     Kinesin  27 eekkskkenkeeeekkfkFdkvfdeeatqeevyeetakp 65 
                 ++ + ++ + +++ ++f+ d++++ ++ qee++++    
  CCD23610.1  93 NNDNCSNYSPDKNLTSFHKDSIVELNQLQEELFQKK--T 129
                 233333333334444444455555544455544442..2 PP

  == domain 2  score: -5.3 bits;  conditional E-value: 2.2
                 T.............TSTSSEBEEEECTTSCCEEETTS--EEESSHHHHH CS
     Kinesin 147 k.............skkkkklkiredskkgevyvkgltevevksaeevl 182
                                k  ++ +  + +++ ++++++l++ ++k++e+  
  CCD23610.1 186 YlneghqlhlkqleAK--NNAEFNKMENEYRLKIEKLKQSKIKKFEDNR 232
                 0333333333332122..2344444444445777777777777777655 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 0.96
                 TSTTT........TSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHH CS
     Kinesin 143 Leskk........skkkkklkiredskkgevyvkgltevevksaeevle 183
                 L++++        +  +++lk+ e+ +++ v +++  e +  +++e+ e
  CCD23610.1 329 LKTTQsessnlesEILENDLKVEEKLRRK-VELEDYIENTEVDLKEINE 376
                 22222222222211112244444444433.5555555544445555554 PP

  == domain 4  score: 336.4 bits;  conditional E-value: 2.5e-104
                 E-S.SSHHHHTTTTEBCEEEEC......TCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHT CS
     Kinesin   2 vRp.lnekekeeeeeeevevee......ekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTme 93 
                 +Rp + ++e++++++ +v+  +      + + +++ ++++++++++ kfkFdk+f++++t+++v++e+  +lv+s l+Gyn++ifaYGqtgsGKTyTm 
  CCD23610.1 405 IRPpILPQESNNTSHLKVSEFDdnngtqTLEIQKALNNNSSNNSTTLKFKFDKIFNQNETNDDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTYTML 502
                 554145555555555555444466776566777888899999999**********************6.9***************************** PP

                 BCTTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTT..............TSTSSEBEEEECTTSCCEEETTS--EEESSH CS
     Kinesin  94 gkeeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskk..............skkkkklkiredskkgevyvkgltevevksa 178
                      ++Giip +++++F+ +++ ke+  ++++++++++EiYne+i+DLL++++              +++++k +ir+d+++++++v+++t+ +++s 
  CCD23610.1 503 HP---KDGIIPATISHIFNWTNNLKER-GWKYEIECEFVEIYNENIVDLLRNEHdnngkvndllaspsQSNSTKHEIRHDPETQTTKVTNITTCKLDSK 597
                 86...67****************9998.9***********************999***********98777789************************* PP

                 HHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
     Kinesin 179 eevlellekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaek 277
                  +v ++l++++k r++a+t  ne+SSRSH++f i+l+ +n+ ++++   + + lnLvDLAGsEr+++++  +gerl+E++niN+SL++Lg+vi+aL+ +
  CCD23610.1 598 ITVDNILRRANKLRSTASTLSNEHSSRSHSIFIIHLKGTNEITGEK---SYGILNLVDLAGSERINSSQV-TGERLRETQNINRSLSCLGDVIHALTGS 692
                 ****************************************887776...79******************6.7999*********************988 PP

                 ......CCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHC CS
     Kinesin 278 ......kkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerak 331
                        k++hip+R+SkLT lLq sL Gnsktlm+v++sps + ++etl++l+fa++++
  CCD23610.1 693 ekdkenAKKRHIPFRNSKLTYLLQYSLIGNSKTLMFVNISPSINYVNETLNSLRFASKVN 752
                 89999999*************************************************987 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.8      0.98   5.9e+03      48      72 ..     105     129 ..      64     209 .. 0.61
   2 ?   -3.7   0.2       1.8   1.1e+04       3      21 ..     227     245 ..     225     246 .. 0.78
   3 !  187.2   0.9   2.6e-59   1.5e-55       2     149 .]     379     548 ..     378     548 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.98
                  TTEEEE-SEEEECTTHCCCCCCCCH CS
  Microtub_bd  48 kkkefsFdrvfeseseqeevfeeis 72 
                  +  +f+ d ++e ++ qee+f+  +
   CCD23610.1 105 NLTSFHKDSIVELNQLQEELFQKKT 129
                  5555666666666666666665422 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.8
                  HHHHHHHHCHHHHHHHCTB CS
  Microtub_bd   3 keetlRrkleNtiqelkGn 21 
                  k e +R  l N+++++  +
   CCD23610.1 227 KFEDNRNALLNKVEDISNK 245
                  56789999*****998665 PP

  == domain 3  score: 187.2 bits;  conditional E-value: 2.6e-59
                  HHHHHHHHHCHHHHHHHCTB-EEEEEEECCCS-T........EEEETTT.......................TTTEEEE-SEEEECTTHCCCCCCCCH CS
  Microtub_bd   2 ekeetlRrkleNtiqelkGniRvfarvrpelesek.......akikfpe....................eekkkkkefsFdrvfeseseqeevfeeis 72 
                   keet+Rr l+Nt+qel+GniRv++r+rp+   ++           ++e                    ++++++ +f+Fd++f++++++++vf+e+ 
   CCD23610.1 379 IKEETMRRSLHNTLQELRGNIRVYCRIRPPILPQEsnntshlK---VSEfddnngtqtleiqkalnnnsSNNSTTLKFKFDKIFNQNETNDDVFKEVG 473
                  79***************************99885446674441...332334556666777778888887889999********************** PP

                  HHHHHHHTT--EEEEEEES................ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  73 qlvqsaldgynvcifaygqTGsGKtyTmegeeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                  qlvqs+ldgynvcifaygqTGsGKtyTm     ++g ip ++++if+++++lke+gwkyeie++fveiyne++ DlL
   CCD23610.1 474 QLVQSSLDGYNVCIFAYGQTGSGKTYTMLH--PKDGIIPATISHIFNWTNNLKERGWKYEIECEFVEIYNENIVDLL 548
                  *****************************9..99******************************************8 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.4   0.00051         3       2      22 ..     165     185 ..     164     190 .. 0.87
   2 ?    7.5   5.0   0.00059       3.5       8      32 ..     298     323 ..     296     326 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00051
   PKcGMP_CC   2 llllKDERIRELEkrlaekde 22 
                 ll++K+  IR L ++l +k +
  CCD23610.1 165 LLKSKENEIRNLNEKLTNKKK 185
                 89**************99976 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00059
   PKcGMP_CC   8 ERI.RELEkrlaekdeEIqELrskLD 32 
                 ERI +ELE + + +  EI+ L+ kLD
  CCD23610.1 298 ERIeKELEPKAKAQKSEIKNLKEKLD 323
                 89979********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2767  (0.154331); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.09u 0.30s 00:00:01.39 Elapsed: 00:00:00.48
# Mc/sec: 4745.89
//
Query:       CCD23611.1  [L=255]
Description: hypothetical protein NDAI_0B05780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-31  107.0  12.6    8.9e-31  107.0  12.6    2.2  2  Rrp15p    Rrp15p
  ------ inclusion threshold ------
       0.49    9.8  29.6       0.63    9.4  29.6    1.1  1  SDA1      SDA1
        1.1    7.8   4.1        1.3    7.6   4.1    1.1  1  Ndc1_Nup  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> Rrp15p  Rrp15p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   5.4         3   1.8e+04      42      42 ..      56      56 ..       7     105 .. 0.51
   2 !  107.0  12.6   1.5e-34   8.9e-31       1     134 []     108     249 ..     108     249 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 3
      Rrp15p 42 e 42
                +
  CCD23611.1 56 D 56
                1 PP

  == domain 2  score: 107.0 bits;  conditional E-value: 1.5e-34
      Rrp15p   1 fadamskilssklsekkkkkpiLskakkaekkakkiedekleakakkqlrkekkekeekgrvkdviggwt............lekErrlrkvAtrGVVk 87 
                 f++a+++ilss+l++ ++k+pi++++kk  kk++   ++kle++a++ l+ e+k+  +k r kd+i+  +            lekE +lrk+A++GVVk
  CCD23611.1 108 FSSAVNAILSSHLKAYDRKDPIMARNKKVLKKNE---SDKLEQQARRVLTTERKKLLNKARKKDIIPIASgenqngeeiravLEKETKLRKIAQKGVVK 203
                 6899***********************8888887...*****************************987799*************************** PP

      Rrp15p  88 LFNAvraaQkkvekelaeaeeleklgekkkekvlkelsKekFLdllk 134
                 LFNA+ ++Q+k+eke a++     +++k++e  ++e+sKekFLdl+k
  CCD23611.1 204 LFNAILSTQVKTEKEIATTMGDI-KNRKERETLITEVSKEKFLDLVK 249
                 *****************986554.599*****************997 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  29.6   0.00011      0.63      66     282 ..      21     228 ..       8     251 .. 0.42

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00011
        SDA1  66 vaegieGleLlekwkeeekkekreeeeedsddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeeeeeee 164
                 + ++++Gle  ++ ke  +++++ eee d+ ++d+ + ++v+s     ++ +g+    e+d+ ++ e   +edeee ++ +++k++k++++++   +++
  CCD23611.1  21 QDTKVKGLEANNSLKELSGSDDS-EEEADEIQDDELDLSDVSSV----SEANGS----EDDGSDAHERG-EEDEEEGDDFPKKKKSKKSKHDDG--SND 107
                 33456666666666665555544.22222122222222222222....222222....22222222222.444444444444444433333333..223 PP

        SDA1 165 eeeeeeeeeekekkkk...........kakeaseeekkkekeeekiskaselattrILTpaDFaklkelraeaavkkqlesakrkkkkkkdeee..... 247
                  ++            +           ++k+   +++kk  ++++  k  e ++ r+LT +  + l+++r ++ +  ++++++++++      +     
  CCD23611.1 108 FSSA-----------VnailsshlkayDRKDPIMARNKKVLKKNESDK-LEQQARRVLTTERKKLLNKARKKDIIPIASGENQNGEEI-----Ravlek 189
                 3333...........133344444444444444444444333333333.557899***************633333333333333222.....122222 PP

        SDA1 248 ...eeaeksedlvtasd.ieglakkrkatkeerlasvke 282
                     ++  ++  v++ + i   + k +++ +  +  +k+
  CCD23611.1 190 etkLRKIAQKGVVKLFNaILSTQVKTEKEIATTMGDIKN 228
                 333233333444443220222222333333344444433 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.1   0.00022       1.3     392     491 ..      89     212 ..      29     221 .. 0.43

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00022
    Ndc1_Nup 392 ifgnsltaeaspkssssskegvekalsslakspgqs.....psptarls............prarkllekaksrllskeqkealsestikkk....... 466
                  f +  ++++++++    ++++++a+++  +s+ ++     p   ar +            ++ar++l++++++ll+k +k+ + + ++ ++       
  CCD23611.1  89 DFPK--KKKSKKSKHDDGSNDFSSAVNAILSSHLKAydrkdP-IMARNKkvlkknesdkleQQARRVLTTERKKLLNKARKKDIIPIASGENqngeeir 184
                 2321..112222222233344444444444444433332121.11111123333333333355555555555555554444444443333335555555 PP

    Ndc1_Nup 467 ....vekelaqllksp.........ligylFrqslrrr 491
                                +         +++ lF+  l+++
  CCD23611.1 185 avleK----------EtklrkiaqkGVVKLFNAILSTQ 212
                 54332..........12233333334666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1878  (0.104747); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.30s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 1814.54
//
Query:       CCD23612.1  [L=523]
Description: hypothetical protein NDAI_0B05790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-34  119.1   0.1    5.9e-34  118.3   0.1    1.4  1  Metallophos  Calcineurin-like phosphoesterase
    9.1e-23   80.4   0.2    8.7e-22   77.2   0.0    2.3  2  PPP5         PPP5 TPR repeat region
    3.4e-17   61.5   4.9    5.7e-07   29.1   0.3    4.3  4  TPR_1        Tetratricopeptide repeat
      5e-14   51.2   0.7    4.8e-05   23.2   0.1    3.7  3  TPR_2        Tetratricopeptide repeat
    1.1e-10   41.0   0.9    5.9e-06   25.9   0.2    2.9  2  TPR_11       TPR repeat
    2.6e-07   30.7   0.0    3.9e-05   23.7   0.0    2.2  2  TPR_9        Tetratricopeptide repeat
    1.5e-06   28.0   3.9      0.002   18.2   0.7    3.7  3  TPR_8        Tetratricopeptide repeat
    1.4e-05   25.1   0.4       0.11   12.9   0.1    3.1  2  TPR_17       Tetratricopeptide repeat
     0.0034   17.4   0.6      0.012   15.7   0.6    2.0  1  DUF1563      Protein of unknown function (DUF1563)
  ------ inclusion threshold ------
      0.021   15.3   0.2       0.11   13.1   0.1    2.1  3  TPR_19       Tetratricopeptide repeat
      0.047   13.7   0.2       0.33   11.1   0.0    2.5  2  TPR_7        Tetratricopeptide repeat
      0.049   13.7   3.9       0.27   11.3   0.1    3.1  3  Fis1_TPR_C   Fis1 C-terminal tetratricopeptide repeat
      0.049   13.7   3.6       0.17   12.0   2.8    2.3  2  MIT          MIT (microtubule interacting and transport) doma
      0.072   13.4   1.2        1.1    9.6   0.0    2.6  2  TPR_12       Tetratricopeptide repeat
        0.1   12.8   1.8        9.5    6.5   0.9    2.6  2  ANAPC3       Anaphase-promoting complex, cyclosome, subunit 3
       0.22   12.2   0.0         10    6.9   0.0    2.4  2  TPR_16       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.1   5.3e-37   5.9e-34       1     202 [.     252     446 ..     252     448 .. 0.95

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 5.3e-37
                  EEEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHHH CS
  Metallophos   1 lrilvigDlHlalgggqlddllkllddllreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygylg 89 
                  ++i v+gD+H     gq++d+l++++++ +  +   +l++GD+vdrg++++e++ l ++ ++ +p++++l +GNHe        gfe+e++ ky    
   CCD23612.1 252 MKISVCGDTH-----GQFYDVLNIFKKFGKVGEKHTYLFNGDFVDRGSWSCEVALLfYSLKILFPKNIFLNRGNHEtdnmnkmyGFEDECKYKYS--- 341
                  7999******.....*************666666666666****************99999999****************999999999999999... PP

                  HHHHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEE.THHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHH CS
  Metallophos  90 ifsepwrsdaevfnnlplaslgsgslkvlllhGgspel.lvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgdea 183
                    ++++++++  f+ lpla l+++  ++l++hGg p + + ++d+++++n+++ +p++g   +++++d        +    g  p  rg g +fg++ 
   CCD23612.1 342 --PRIFEMFSRSFESLPLATLIND--NYLVMHGGLPSDtSLTVDDIRKINRFTQPPREGlfmELLWSD--------PQEKDGFGPSQRGLGFSFGSDI 427
                  ..899*******************..********888899****************************........99999999999*********** PP

                  HHHHHHHTTESEEEEESSS CS
  Metallophos 184 ledllkkygvdlvisGHtH 202
                  ++++l+k+++  ++++H+ 
   CCD23612.1 428 TKNFLEKNKLRKIFRSHEV 446
                  *****************85 PP

>> PPP5  PPP5 TPR repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.74   8.3e+02       4      22 ..      20      38 ..      17      57 .. 0.76
   2 !   77.2   0.0   7.8e-25   8.7e-22       1      94 []     121     238 ..     121     238 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.74
        PPP5  4 ceklirreaFekAIeveek 22
                 +k+i+++++ kA+e   k
  CCD23612.1 20 GNKYIKEKKYTKAVEYYTK 38
                5799999999999976554 PP

  == domain 2  score: 77.2 bits;  conditional E-value: 7.8e-25
        PPP5   1 lkeceklirreaFekAIevee..kesasetldlesieveks...YdGprLe......eeee..............kitqeFvkamierfk.kgkklhkk 73 
                 l+ cek+ir+e+F+kAI +++  +++ ++ l+l+s++ +++   Y+Gp L+      +  e              +++qeF+++m+++++ kgk+++kk
  CCD23612.1 121 LDMCEKVIREERFKKAIGGDDtdRVNPCQVLNLSSFDANSDlvkYEGPILDfeqlyvD--EngdkstsvggvaikNMSQEFISKMVNDVFlKGKNIPKK 217
                 578**************99987788999*******999988999******98666552..1557899*******9999**********999******** PP

        PPP5  74 yvyaillkvkellkkepslve 94 
                 y++ai++++++l+++epslve
  CCD23612.1 218 YAAAIISHADRLFRDEPSLVE 238
                 *******************97 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.3   5.1e-10   5.7e-07       4      32 ..      16      44 ..      13      46 .. 0.93
   2 !   25.6   0.1   6.2e-09     7e-06       4      34 .]      50      80 ..      47      80 .. 0.95
   3 ?    5.7   0.0     0.013        14       2      33 ..      82     113 ..      81     114 .. 0.90
   4 ?   -0.9   0.0       1.5   1.7e+03      19      29 ..     119     129 ..     118     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 5.1e-10
                HHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  4 lynlGnayfklgkydeAleyyekALelnP 32
                l+n Gn y k +ky +A+eyy kA+el+ 
  CCD23612.1 16 LKNEGNKYIKEKKYTKAVEYYTKAIELDS 44
                6899***********************97 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 6.2e-09
                HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  4 lynlGnayfklgkydeAleyyekALelnPnn 34
                + n+++a +kl +++ +l++++ ALel+P+n
  CCD23612.1 50 FSNRALAQLKLDNFQSCLDDCNSALELDPKN 80
                68***************************98 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 ka+ ++G+  + l  +++A  + + +L+  P+
  CCD23612.1  82 KAYHRRGLSQLGLLHFKKAKNDLSIVLKAKPS 113
                 89******************999999998887 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.5
                 HHHHHHHHHHH CS
       TPR_1  19 eAleyyekALe 29 
                  Al+ +ek+++
  CCD23612.1 119 RALDMCEKVIR 129
                 69******996 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   4.3e-08   4.8e-05       4      32 ..      16      44 ..      13      46 .. 0.91
   2 !   17.6   0.0   2.7e-06     0.003       4      34 .]      50      80 ..      47      80 .. 0.94
   3 !    6.9   0.0     0.007       7.9       2      33 ..      82     113 ..      81     114 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.3e-08
       TPR_2  4 lynlGlayyklgdyeeAleafekAleldP 32
                l n G+ y+k ++y +A+e++ kA+eld 
  CCD23612.1 16 LKNEGNKYIKEKKYTKAVEYYTKAIELDS 44
                7899***********************96 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.7e-06
       TPR_2  4 lynlGlayyklgdyeeAleafekAleldPnn 34
                  n++la +kl++++ +l++++ AleldP+n
  CCD23612.1 50 FSNRALAQLKLDNFQSCLDDCNSALELDPKN 80
                679**************************97 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.007
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +a++++Gl+ + l ++++A++++  +l+  P 
  CCD23612.1  82 KAYHRRGLSQLGLLHFKKAKNDLSIVLKAKPS 113
                 79*******************99999888876 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.2   5.3e-09   5.9e-06       1      41 [.      20      60 ..      20      61 .. 0.97
   2 !   12.7   0.0   6.6e-05     0.074      19      38 ..      72      91 ..      71      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 5.3e-09
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41
                G+ y +  ky++A+e Y kA++ld+++  +++n++la++k+
  CCD23612.1 20 GNKYIKEKKYTKAVEYYTKAIELDSTQSIFFSNRALAQLKL 60
                9*************************************997 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 6.6e-05
      TPR_11 19 kAlkldPdnaeayynLGlay 38
                 Al+ldP+n  ay+ +Gl +
  CCD23612.1 72 SALELDPKNIKAYHRRGLSQ 91
                7****************876 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   7.1e-05     0.079       5      65 ..      23      83 ..      21      85 .. 0.94
   2 !   23.7   0.0   3.5e-08   3.9e-05       6      70 ..      58     122 ..      53     125 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.1e-05
       TPR_9  5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapda 65
                +i e+++ +a +++   + l++ +      R+l++ +l++++  l+d + +l+l+p++  a
  CCD23612.1 23 YIKEKKYTKAVEYYTKAIELDSTQSIFFSNRALAQLKLDNFQSCLDDCNSALELDPKNIKA 83
                8999****************************************************87665 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 3.5e-08
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeaira 70 
                 +  ++++ +l  +++ l l+P+ +  +  RGl +  l ++++A +dL   l   p++++a ++  
  CCD23612.1  58 LKLDNFQSCLDDCNSALELDPKNIKAYHRRGLSQLGLLHFKKAKNDLSIVLKAKPSDATAKRALD 122
                 567899******************************************************99866 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.7   1.8e-06     0.002      11      32 ..      23      44 ..      18      46 .. 0.91
   2 !    7.3   0.0    0.0054         6       6      34 .]      52      80 ..      49      80 .. 0.94
   3 ?    1.0   0.0      0.58   6.5e+02       2      32 ..      82     112 ..      81     114 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.8e-06
                HHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8 11 ylklgdyeeAkeyyekaleldp 32
                y+k ++y +A+eyy ka+eld 
  CCD23612.1 23 YIKEKKYTKAVEYYTKAIELDS 44
                99******************96 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0054
                HHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  6 nlgsiylklgdyeeAkeyyekaleldpdn 34
                n +++ lkl ++++    ++ aleldp+n
  CCD23612.1 52 NRALAQLKLDNFQSCLDDCNSALELDPKN 80
                789999*********************97 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.58
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldp 32 
                 +ay++ g+  l l  +++Ak  +  +l+++p
  CCD23612.1  82 KAYHRRGLSQLGLLHFKKAKNDLSIVLKAKP 112
                 6788888888888888888887766666666 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1    0.0001      0.11       1      32 [.      35      66 ..      35      68 .. 0.92
   2 !    9.2   0.0    0.0016       1.7       5      22 ..      73      90 ..      70     104 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0001
      TPR_17  1 lylkaleldPnnadaynnLAelllknGdlmtA 32
                +y+ka+eld + + ++ n+A ++lk+ +++ +
  CCD23612.1 35 YYTKAIELDSTQSIFFSNRALAQLKLDNFQSC 66
                6************************9998866 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0016
      TPR_17  5 aleldPnnadaynnLAel 22
                aleldP+n +ay+ ++  
  CCD23612.1 73 ALELDPKNIKAYHRRGLS 90
                9*************9975 PP

>> DUF1563  Protein of unknown function (DUF1563)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.6   1.1e-05     0.012      16      42 ..      27      53 ..      25      54 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
     DUF1563 16 NLYaTYVEysLKQiFLDkiQKisKadR 42
                  Y+  VEy+ K i LD++Q i+ ++R
  CCD23612.1 27 KKYTKAVEYYTKAIELDSTQSIFFSNR 53
                5699*******************9999 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   9.6e-05      0.11       2      62 ..      24      85 ..      23      92 .. 0.93
   2 ?    1.8   0.1      0.31   3.5e+02      16      64 ..      72     120 ..      66     124 .. 0.87
   3 ?   -0.9   0.0       2.2   2.4e+03      11      44 ..     101     136 ..      94     138 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.6e-05
      TPR_19  2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.arya 62
                ++e++y+ A++++++a++ d  ++    + A a+l+l +++   + ++ ++e dp++  +y+
  CCD23612.1 24 IKEKKYTKAVEYYTKAIELDSTQSIFFSNRALAQLKLDNFQSCLDDCNSALELDPKNiKAYH 85
                6899*****************************************99999999999888887 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.31
      TPR_19  16 qalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasL 64 
                 +al+ dpkn  a  +    +l l ++++A++ L+ +++++p da ++++
  CCD23612.1  72 SALELDPKNIKAYHRRGLSQLGLLHFKKAKNDLSIVLKAKPSDATAKRA 120
                 7999999999999999999999999999999999999999999988866 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 2.2
      TPR_19  11 lalleqalqedpknaearllL..AeallalgqldeA 44 
                  + l+ +l+++p +a a+ +L  +e  +   ++++A
  CCD23612.1 101 KNDLSIVLKAKPSDATAKRALdmCEKVIREERFKKA 136
                 444444566666666666643336666666666666 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0003      0.33      12      32 ..      26      46 ..      21      48 .. 0.81
   2 ?   -1.8   0.0       3.9   4.3e+03      17      34 ..     119     134 ..     118     136 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0003
       TPR_7 12 lGdyeeAielyeqsLaltkdp 32
                + +y +A+e+y+++++l++ +
  CCD23612.1 26 EKKYTKAVEYYTKAIELDSTQ 46
                5689*********88888776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.9
       TPR_7  17 eAielyeqsLaltkdped 34 
                 +A++ +e+  +++++ ++
  CCD23612.1 119 RALDMCEK--VIREERFK 134
                 89999999..99888776 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3      0.68   7.6e+02      11      30 ..      23      42 ..      23      45 .. 0.81
   2 ?   11.3   0.1   0.00024      0.27       8      35 ..      54      81 ..      52      85 .. 0.93
   3 ?    0.8   0.0      0.49   5.5e+02      16      51 ..      96     131 ..      88     133 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.68
                HHHHT-HHHHHHHHHHHHHH CS
  Fis1_TPR_C 11 hyklgeYseArryvdalLei 30
                ++k ++Y++A +y    +e+
  CCD23612.1 23 YIKEKKYTKAVEYYTKAIEL 42
                57889*******98877665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00024
                HHHHHHHT-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C  8 AlGhyklgeYseArryvdalLeiEPenr 35
                Al+++kl +++ ++  ++  Le++P+n 
  CCD23612.1 54 ALAQLKLDNFQSCLDDCNSALELDPKNI 81
                9*************************96 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.49
                 -HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHT CS
  Fis1_TPR_C  16 eYseArryvdalLeiEPenrQaqsLkeliedkikke 51 
                  +++A++ +  +L+  P+   a+    ++e+ i+ e
  CCD23612.1  96 HFKKAKNDLSIVLKAKPSDATAKRALDMCEKVIREE 131
                 689999999999999999999999888888888776 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.8   0.00015      0.17       2      33 ..      11      42 ..      10      42 .. 0.95
   2 ?   -1.8   0.0         3   3.3e+03      25      50 ..      61      85 ..      60      88 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
         MIT  2 dkAlelvkkAveeDnagnyeeAlelYkealel 33
                ++A++l ++  ++ ++++y +A+e+Y++a+el
  CCD23612.1 11 QQAIDLKNEGNKYIKEKKYTKAVEYYTKAIEL 42
                7999999***********************96 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3
         MIT 25 elYkealelLlqalkekneerrellr 50
                ++++++l+ ++ al   +++  ++++
  CCD23612.1 61 DNFQSCLDDCNSALE-LDPKNIKAYH 85
                678999999999996.5556666655 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00095       1.1      43      74 ..      11      42 ..       4      45 .. 0.82
   2 ?    1.8   0.1      0.27   3.1e+02       7      33 ..      51      77 ..      45     104 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00095
      TPR_12 43 ltattlrnLgrlyralgryeeAlelleealai 74
                + a+ l n g  y + ++y +A+e++++a+++
  CCD23612.1 11 QQAIDLKNEGNKYIKEKKYTKAVEYYTKAIEL 42
                56777888999999999999999999999987 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.27
      TPR_12  7 nnlaavlrrlgrydeAlellekaleia 33
                +n+a++ ++l +++ +l+ ++ ale+ 
  CCD23612.1 51 SNRALAQLKLDNFQSCLDDCNSALELD 77
                588999999999999999999999997 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.9    0.0085       9.5       3      58 ..      27      83 ..      20     102 .. 0.75
   2 ?    4.4   0.0     0.038        43      11      55 ..     225     281 ..     216     286 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0085
                T-HHHHHHHHHHHH.HHH--HHHHHHH..HHHHHHTT-HHHHHHHHHCT.SHHHC-HHH CS
      ANAPC3  3 nnyknAiflaerllaaetespedayll..AlclylngqykrAyellrka.klnskslgc 58
                ++y +A+ ++ ++   e +s +++++   Al+ +++ +++++++ +++a +l++k++++
  CCD23612.1 27 KKYTKAVEYYTKAI--ELDSTQSIFFSnrALAQLKLDNFQSCLDDCNSAlELDPKNIKA 83
                56777888888888..7777777777566888888888888888888888888777766 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.038
                 HHHHHH............HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC- CS
      ANAPC3  11 laerll...........aaetespedayllAlclylngqykrAyellrka.klnsks 55 
                 +a+rl+           +++++++eda+  + c    gq++  +++++k+ k  +k+
  CCD23612.1 225 HADRLFrdepslvelsnNKQQDNDEDAMKISVCGDTHGQFYDVLNIFKKFgKVGEKH 281
                 6677777777667666558999****************************6666665 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.009        10       3      47 ..      19      58 ..      18      78 .. 0.85
   2 ?    2.7   0.0      0.19   2.1e+02       3      39 ..      87     120 ..      85     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.009
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrq 47
                +++ +++ ++y++A+++++ a+++d       ++ +++++a++++
  CCD23612.1 19 EGNKYIKEKKYTKAVEYYTKAIELD-----STQSIFFSNRALAQL 58
                57779999*****************.....667777777777766 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.19
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAlll 39 
                 ++++ l + ++ +A + l ++lk+    P +a A  +
  CCD23612.1  87 RGLSQLGLLHFKKAKNDLSIVLKAK---PSDATAKRA 120
                 577788888999*************...888888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3726.50
//
Query:       CCD23613.1  [L=550]
Description: hypothetical protein NDAI_0B05800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-31  109.8   1.3    1.4e-31  109.8   1.3    2.1  2  CBF       CBF/Mak21 family


Domain annotation for each model (and alignments):
>> CBF  CBF/Mak21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.09   1.6e+03      82      82 ..     168     168 ..      79     258 .. 0.54
   2 !  109.8   1.3   7.7e-36   1.4e-31       2     170 .]     317     481 ..     316     481 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.09
         CBF  82 p 82 
                 +
  CCD23613.1 168 Q 168
                 1 PP

  == domain 2  score: 109.8 bits;  conditional E-value: 7.7e-36
         CBF   2 vqaLvllfqllskqkqsel.lsasdRFyraLYrkLldpelltsskralllnlly.....kalkadkpvkrvaAFvKRllqlalhappsfalgllallse 94 
                 ++aL+ lf+l+++    +l +++   Fy++LY+++ +p+l+++++r ++++l++     ++l    +++++a+F+K+l + +l+a+ps +++++ ++++
  CCD23613.1 317 ILALNGLFELMKRY---NLeYPN---FYTKLYQLI-TPNLMHVKYRPRFFRLMDiflssSHL----SAHLIASFIKKLSRFTLNASPSAIVSVIPFVYN 404
                 79***********8...555888...*******99.******************98888888....********************************* PP

         CBF  95 llkhppklkalle......ekfkdvkeeeeeekkeek.......kkskaesgvYdptkrdpeysnaeasslwElsllakhfhPtValfA 170
                 l++++p+++++l+      + f+             +       + +++ ++++d t+ +pe ++a  sslwEl++l +h+h +Va++A
  CCD23613.1 405 LIRKHPTCMIMLHnpqflsDPFQT------------EeeilnlkNLKTNYKDPFDITEINPELTHALDSSLWELATLMNHYHANVATLA 481
                 ***999*******55433311111............112233332233348***********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3987.11
//
Query:       CCD23614.1  [L=577]
Description: hypothetical protein NDAI_0B05810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-94  316.1   0.6    1.5e-90  304.4   0.6    2.1  1  Asn_synthase  Asparagine synthase
    1.1e-33  115.8   0.0    1.7e-33  115.1   0.0    1.3  1  GATase_7      Glutamine amidotransferase domain
    2.1e-28   99.2   0.0    3.8e-28   98.3   0.0    1.4  1  GATase_6      Glutamine amidotransferase domain
    1.7e-06   27.7   0.0    3.4e-06   26.7   0.0    1.4  1  DUF3700       Aluminium induced protein
     0.0032   16.6   0.0     0.0058   15.8   0.0    1.3  1  NAD_synthase  NAD synthase


Domain annotation for each model (and alignments):
>> Asn_synthase  Asparagine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.4   0.6   4.2e-94   1.5e-90       2     334 ..     212     544 ..     211     558 .. 0.97

  Alignments for each domain:
  == domain 1  score: 304.4 bits;  conditional E-value: 4.2e-94
  Asn_synthase   2 lrelLedaVkrrlradvpvGalLSGGlDSSliaalaarqsk....................................splktFsigfeekgsdeaky 62 
                   +re Le aV++rl+a+vp+G+lLSGGlDSSlia++aar+++                                    s+l++F+ig+  +  +++++
    CCD23614.1 212 IRESLESAVRKRLMAEVPFGVLLSGGLDSSLIASIAARETEkanaqatldnenandetskahltgvddeghlhnggwSKLHSFAIGL--PNAPDLQA 306
                   89*************************************************************************************..******** PP

  Asn_synthase  63 akevaehlgtehtelvlteeelldalpdviyhlee..pfadrsaiplyllsrlakrkgvkvvLsGeGaDElfgGYpyfykaalsrsrefeklplars 157
                   a++va+ +g+ h+e  +t +e+ldal+dviyhle+  ++++r+++p++llsr++k++gvk+vLsGeG+DE+fgGY+yf +a+               
    CCD23614.1 307 ARKVAKFIGSIHHEHTFTLQEGLDALDDVIYHLETydVTTIRASTPMFLLSRKIKAQGVKMVLSGEGSDEIFGGYLYFAQAP--------------- 388
                   ****************************************************************************999999............... PP

  Asn_synthase 158 lrasllarklrklaellelaeardleelaelyrlkasdsaeaelegedelhrelyldlktllpgdllrkDrasmahglEaRvPflDhrlvevalrlp 254
                                                                ++ e+h e++ ++++l+  d+lr+++++ma+glEaRvPflD+++++++++++
    CCD23614.1 389 ---------------------------------------------SAAEFHTESVKRVNNLHLADCLRANKSTMAWGLEARVPFLDRDFLQLCMNID 440
                   .............................................7899************************************************ PP

  Asn_synthase 255 pelklrg....gieKyiLRealeg........ylPeeileRpKegfsapvgewklkgelrelaeellsds.............rlakeglldreave 326
                   p++k+ +    +ieKyiLR+a++         ylPeeil+R+Ke+fs++vg+++++ +l++ ae+ +sd+             +++ke++++r +++
    CCD23614.1 441 PKEKMINqaegRIEKYILRKAFDTsddpeakpYLPEEILWRQKEQFSDGVGYSWID-GLKDTAERVISDAmfenpkdhwgtdiPTTKEAYWYRLKFD 536
                   **********************9888899999***********************9.**************************************** PP

  Asn_synthase 327 elleehea 334
                   +l++++ a
    CCD23614.1 537 ALYPQKTA 544
                   ***99988 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   4.8e-37   1.7e-33       1     122 [.      47     166 ..      47     167 .. 0.96

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 4.8e-37
    GATase_7   1 hrrlsiidseagaQPmvssedgrlvivfnGeiyNykelreeLeakghrfrtksDtevllalleaewgeealerlnGmfAfaiwdeeekrlllaRDrlGi 99 
                 h+rl+i+ +++gaQP++ s +g++++++nGeiyN+ ++re++ +  + f+t sD+e ++ l+ + +  ++ ++l+GmfA++++d++++r+++aRD++Gi
  CCD23614.1  47 HERLAIVGLDSGAQPIT-SPCGNYTLCVNGEIYNHIQIREQFPD--YPFKTLSDCEPIIPLYLK-HDIDTPKHLDGMFAWCLYDSKQDRIIAARDPIGI 141
                 89***************.7**********************975..99**************98.899******************************* PP

    GATase_7 100 kPLyygedk..gdallfaSelkall 122
                 + Ly+g+++   ++++faSelk+l+
  CCD23614.1 142 TTLYMGRNSktPQTVFFASELKCLT 166
                 *******998867**********96 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.0   1.1e-31   3.8e-28       1     134 []      32     161 ..      32     161 .. 0.96

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 1.1e-31
    GATase_6   1 pdasglaslvedevalaHvRlaivglaeeegaqPfpsedgrlllvhNGeiynykelreelpalkglafrsrsDtevllalleelGeevlerlrGmfafa 99 
                 pd sg   +++++++laH Rlaivgl+  +gaqP++s+ g+++l +NGeiyn+ ++re++p+   ++f++ sD+e ++ l+ +++ ++ ++l+Gmfa +
  CCD23614.1  32 PDWSGN--VIKNTTILAHERLAIVGLD--SGAQPITSPCGNYTLCVNGEIYNHIQIREQFPD---YPFKTLSDCEPIIPLYLKHDIDTPKHLDGMFAWC 123
                 567777..89999*************8..9********************************...********************************** PP

    GATase_6 100 iwdkrentlilardrlgvkplyyavd...esglafase 134
                 ++d++++++i ard +g+ +ly++ +    +++ fase
  CCD23614.1 124 LYDSKQDRIIAARDPIGITTLYMGRNsktPQTVFFASE 161
                 ************************99998999999998 PP

>> DUF3700  Aluminium induced protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   9.6e-10   3.4e-06     127     197 ..     114     185 ..      92     195 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 9.6e-10
     DUF3700 127 kdleGkfafvlydskaktvfvaldadgsvplyWGiaadg..svvisddlelvkksCgksfapfPkGclftseg 197
                 k+l+G fa+ lydsk++ +++a+d  g   ly G ++ +  +v ++ +l+ +++ C  s+ +fP G ++ s++
  CCD23614.1 114 KHLDGMFAWCLYDSKQDRIIAARDPIGITTLYMGRNSKTpqTVFFASELKCLTDDCD-SIIAFPPGHVYDSKT 185
                 79********************************98764338999***********6.6778*******9975 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.6e-06    0.0058       4      61 ..     211     270 ..     209     280 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.6e-06
                   HHHHHHHHHHHHCTTSEEEEE..E-SSHHHHHHHHHHHHHHTCGEEEEEE--SSSTTHHH CS
  NAD_synthase   4 elvdflkeyvkkagakgvvlG..lSGGvDSslvaalavkalgkenvlalllPssvsseed 61 
                   ++ ++l++ v+k+ + +v +G  lSGG+DSsl+a +a +  +k+n+ a l  ++ ++e +
    CCD23614.1 211 AIRESLESAVRKRLMAEVPFGvlLSGGLDSSLIASIAARETEKANAQATLDNENANDETS 270
                   577889999999999999999668*******************99999776555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.22s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4238.61
//
Query:       CCD23615.1  [L=78]
Description: hypothetical protein NDAI_0B05820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 630.68
//
Query:       CCD23616.1  [L=329]
Description: hypothetical protein NDAI_0B05830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-58  197.1   2.3    4.5e-58  196.9   2.3    1.0  1  LIDHydrolase  Lipid-droplet associated hydrolase
  ------ inclusion threshold ------
      0.043   13.3   0.0       0.12   11.9   0.0    1.6  2  DUF3089       Protein of unknown function (DUF3089)
      0.062   13.1   0.3       0.15   11.8   0.3    1.6  1  XTBD          XRN-Two Binding Domain, XTBD
      0.068   12.4   0.0       0.82    8.9   0.0    2.4  3  Hydrolase_4   Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9   2.3     1e-61   4.5e-58       3     266 .]      32     317 ..      30     317 .. 0.89

  Alignments for each domain:
  == domain 1  score: 196.9 bits;  conditional E-value: 1e-61
  LIDHydrolase   3 ilivlipGNPGlveFYetFlsllseklnpelevlgishaGfeleeeekeakenekvfsLedQiehkedflkellek....aksekdvklilvGHSvG 95 
                   +l+++ipGNPG+ ++Y++Fl +l++k +p++e+l+i haG++ +    +++ n++++ L++Qiehk++++ ++l+k    +   k++ l+++GHSvG
    CCD23616.1  32 PLFIWIPGNPGILQYYQQFLCSLHKK-HPHWEILAIPHAGMDTSLPV-YRHPNDRIYHLNEQIEHKIEVITTFLTKanssDGIMKKRPLVIMGHSVG 126
                   799***********************.***************99999.***************************965544446999********** PP

  LIDHydrolase  96 aYialevlkrlsers........ikkvvlLfPtiediakSpngkkltkl....laylpflalvvglllrvl..kllPesvkslliklvlgkssspke 178
                   +Y++++++   + ++         kk+++++Pti+di+ S++g ++         ylp++  ++++++  l  k++ ++  + li  ++g++ ++  
    CCD23616.1 127 TYMIQRMVLTKEFQDtilhnsfyLKKIGFITPTIIDINLSSKGILISHGlqltHGYLPYILSYLSYFVFSLilKYFDNIR-RRLIAYIMGCQMTDF- 221
                   *******98555555569999**********************9987655655667888888888777766667776655.567788887777755. PP

  LIDHydrolase 179 avettlkfvkspevvrqalhlakdEmeeikeddeeedvllkknkeka..lvfyfgkkDhWvpeetrdelkellge.....eklevde.kgipHaFv 266
                   a+  t  ++++   v+q l la+ Em+ei+++++ ++ ++++++++   l+++f ++DhWv + tr +l++ +++     ++l++++ +++pH+Fv
    CCD23616.1 222 AAIGTEILLTNSVLVKQSLGLASIEMQEIRKNWDVQKQFVENCNHNDiqLWLLFCETDHWVNNVTRTDLIKFYQSnykdiSRLQIEVsSEFPHSFV 317
                   7777777888***********************************9999****************************99999999998*******8 PP

>> DUF3089  Protein of unknown function (DUF3089)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.6e-05      0.12      92     119 ..     114     142 ..     101     148 .. 0.81
   2 ?   -2.8   0.0      0.88     4e+03     121     136 ..     205     219 ..     197     229 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.6e-05
     DUF3089  92 kgrPiiLaGhsQGallllrLl.keeiagk 119
                 k rP++++Ghs G+ +++r++ ++e++++
  CCD23616.1 114 KKRPLVIMGHSVGTYMIQRMVlTKEFQDT 142
                 78****************98514666655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.88
     DUF3089 121 lqkrLvaayligysvt 136
                 +++rL+ ay++g ++t
  CCD23616.1 205 IRRRLI-AYIMGCQMT 219
                 677777.799999998 PP

>> XTBD  XRN-Two Binding Domain, XTBD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   3.4e-05      0.15       9      44 ..     249     285 ..     245     312 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.4e-05
                 S-HHHHHHHHHHHHHHGG.GS-HHHHHHHHHHHHHHH CS
        XTBD   9 eseehWelrreFilrnke.kfeedrLlsLsmvfanlv 44 
                 e  + W ++++F++++ + ++++  L + +  ++n v
  CCD23616.1 249 EIRKNWDVQKQFVENCNHnDIQLWLLFCETDHWVNNV 285
                 7889***********987578**************86 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.31   1.4e+03     186     210 ..       5      29 ..       2      56 .. 0.76
   2 ?    8.9   0.0   0.00018      0.82      74      98 ..     114     138 ..      89     161 .. 0.77
   3 ?   -0.0   0.0     0.096   4.3e+02     173     220 ..     250     297 ..     236     315 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.31
  Hydrolase_4 186 raakitlPllllhGeaDkvvdpeas 210
                  + ++ ++P+ ++h ea+k++++++s
   CCD23616.1   5 SYSESKYPTSIIHIEAEKLIENDPS 29 
                  5567789999999999999999887 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00018
  Hydrolase_4  74 pelplfllGhSmGGliallyllryp 98 
                  +++pl+++GhS+G ++ ++++l+++
   CCD23616.1 114 KKRPLVIMGHSVGTYMIQRMVLTKE 138
                  355*************999987654 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.096
  Hydrolase_4 173 llelldamkrleeraakitlPllllhGeaDkvvdpeasrelyerlgsk 220
                  +++ +d++k+ +e+ ++ ++ l+ll  e D+ v++  + +l++  +s+
   CCD23616.1 250 IRKNWDVQKQFVENCNHNDIQLWLLFCETDHWVNNVTRTDLIKFYQSN 297
                  5666788999999999999999********999998887776655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2590.65
//
Query:       CCD23617.1  [L=232]
Description: hypothetical protein NDAI_0B05840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1241  (0.0692175); expected 358.6 (0.02)
Passed bias filter:                      137  (0.00764125); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1648.58
//
Query:       CCD23618.1  [L=473]
Description: hypothetical protein NDAI_0B05850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-88  295.9  61.0    7.1e-66  222.3  44.2    2.5  2  BAR_2     Bin/amphiphysin/Rvs domain for vesicular traffickin
    0.00029   20.6  42.8    0.00046   19.9  24.1    3.7  3  BAR       BAR domain


Domain annotation for each model (and alignments):
>> BAR_2  Bin/amphiphysin/Rvs domain for vesicular trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.3  44.2   7.9e-70   7.1e-66       3     219 ..      39     312 ..      37     359 .. 0.82
   2 !   76.6  11.1   1.9e-25   1.7e-21     185     288 ..     366     468 ..     349     469 .. 0.82

  Alignments for each domain:
  == domain 1  score: 222.3 bits;  conditional E-value: 7.9e-70
       BAR_2   3 lsikkkttrllqeklgqvkdiskLPkqYleLEkkvDslekvykrlllvtktyevegYDYPpnltesisdwwksigaklkelknvssleedeivllgkkk 101
                 lsik++t rl qe+lg+ +diskLP qY+ LE k Dslek +kr+llv+kt+e egYDYPpnltes+sdww+         ++ ss ++++ +++ +kk
  CCD23618.1  39 LSIKSQT-RLFQEQLGTIHDISKLPDQYKSLELKTDSLEKSIKRILLVSKTFEMEGYDYPPNLTESFSDWWNI--------TKKSSSHRKKQISVNNKK 128
                 6999999.***************************************************************54........444444444445666666 PP

       BAR_2 102 kekskeeke..........sqatsallprtlaqalskaakdsslilqele.................................ekdedlepLikvleqv 157
                 k++++++++          + ++s++lpr++aqa+sk a+d++ i q+l                                  ++ded+++Lik++e++
  CCD23618.1 129 KNNTDNDHDnatnvepienDITSSSFLPRSFAQAISKSAMDCTDIYQQLSiqetatkettikdeneaqeeddedageeeeeddDDDEDIQNLIKAFESW 227
                 6655555555778888887778999*********************************************************99*************** PP

       BAR_2 158 ssaykeiaeakleqDslivkefnkkLeellnqefkkvhelrkkVeesRlkfdtlrseveek.......................e 219
                 s++yk+i+++k e+Ds++ kefn+kLe+l+n+efkkv++lrkkV +sRlkfdt+r+e++ k                       +
  CCD23618.1 228 SNCYKNIDQGKSEMDSMMTKEFNNKLEDLINNEFKKVNTLRKKVADSRLKFDTVRHEIKIKeeeqdqkekqaqaqaqaqaqeqeQ 312
                 **********************************************************998666655544444444444433221 PP

  == domain 2  score: 76.6 bits;  conditional E-value: 1.9e-25
       BAR_2 185 ellnqefkkvhelrkkVeesRlkfdtlrseveekekpetee.edkklleklEDefvsateeAvvvmkeildssklisllklfqkaqleYfekcvkklee 282
                 + l++e +   e+ +kV+++    d+l++e +++++ e+++ e +klle+lEDefvs t+ Av++m+ei++ss +i l+klfq++ql+Y+++cv+++e+
  CCD23618.1 366 KQLETEAEPKAEVEAKVNDT--SKDQLKKEDDAEKQDEQDDsEEHKLLEQLEDEFVSSTASAVEMMTEITESSSIIGLIKLFQNFQLVYYRQCVQEIEA 462
                 45566666666777777776..347888777764444433336789***************************************************** PP

       BAR_2 283 llknln 288
                 +lk ln
  CCD23618.1 463 NLKTLN 468
                 ***998 PP

>> BAR  BAR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.1    0.0047        42      12      49 ..      48      86 ..      41      90 .. 0.78
   2 !   19.9  24.1   5.2e-08   0.00046      83     194 ..     202     331 ..     157     334 .. 0.74
   3 !    5.1   5.9    0.0017        15     153     231 ..     384     461 ..     361     468 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0047
         BAR 12 leekvgkaekTk.LDedFeelerrldvteklieklvkel 49
                ++e +g+   +  L +++++le ++d++ek i++++  +
  CCD23618.1 48 FQEQLGTIHDISkLPDQYKSLELKTDSLEKSIKRILLVS 86
                556666555544499*******************98655 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 5.2e-08
         BAR  83 eagkelgedssfg.......kalekygeavkklaqteeelekrvetnfldplrellekefkeiqkerkklehkrlDyDaakarlkklktkkskkakde. 173
                 +ag+e  ed+++        ka e+ +  +k+++q ++e++ +++++f ++l+ l+++efk+++  rkk ++ rl +D  ++ +k  ++++++k k++ 
  CCD23618.1 202 DAGEEEEEDDDDDediqnliKAFESWSNCYKNIDQGKSEMDSMMTKEFNNKLEDLINNEFKKVNTLRKKVADSRLKFDTVRHEIKIKEEEQDQKEKQAq 300
                 4444444444422566667799**************************************************************966666666666558 PP

         BAR 174 ..........ekaeeelrkAqqkfeesneel 194
                           e+ +e+ +kA+++ ee +e++
  CCD23618.1 301 aqaqaqaqeqEQEQEQGEKAKKEQEEEQEQA 331
                 6777666666556666666666666666665 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0017
         BAR 153 DaakarlkklktkkskkakdeekaeeelrkAqqkfeesneelkaeLpnllalevefv.nqlqafveaqldfhkqaaqlle 231
                 D +k +lkk  ++++++ +d+++  + l++ +++f  s   + + + ++  +e + +    + f + ql +++q+ q  e
  CCD23618.1 384 DTSKDQLKKEDDAEKQDEQDDSEEHKLLEQLEDEFVSSTASAVEMMTEI--TESSSIiGLIKLFQNFQLVYYRQCVQEIE 461
                 8899999998887887777779999999*********************..4444444888888889********98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4286  (0.239054); expected 358.6 (0.02)
Passed bias filter:                      716  (0.0399353); expected 358.6 (0.02)
Passed Vit filter:                       330  (0.0184059); expected 17.9 (0.001)
Passed Fwd filter:                       131  (0.0073066); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.19u 0.38s 00:00:02.57 Elapsed: 00:00:00.58
# Mc/sec: 2448.79
//
Query:       CCD23619.1  [L=681]
Description: hypothetical protein NDAI_0B05860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3595  (0.200513); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 4319.01
//
Query:       CCD23620.1  [L=182]
Description: hypothetical protein NDAI_0B05880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-25   90.4  16.5    1.4e-25   90.0  16.5    1.1  1  MARVEL    Membrane-associating domain


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0  16.5     8e-30   1.4e-25       5     143 ..       5     140 ..       2     141 .. 0.92

  Alignments for each domain:
  == domain 1  score: 90.0 bits;  conditional E-value: 8e-30
      MARVEL   5 plgilrilqlvfaiiilgliasliakldqllgspssalnfavfvavfsfly.alfllvlylfknsaftsilwplidlivdalaallwlvafialaaglr 102
                  + ilr+++ +f ++ +++i++l++++     ++ss++nf++f+a+f++l+ ++f+++ ++f       ++wp++++i+d+l+++++++a+++la+++r
  CCD23620.1   5 VDNILRVINAIFLVLTMAFISALLNTQ----RNNSSRINFCMFAAAFGLLTdSFFGVAFNMFDA----LASWPILLFIFDFLNFVFTFTAGTVLAVAIR 95 
                 578*********************555....799*************************99763....469**************************** PP

      MARVEL 103 discafe....snqysasltvrcgqaqaavafgflavllfaasav 143
                 ++sc++e    sn+    +  rc+ +qaavaf ++++++f+a+++
  CCD23620.1  96 AHSCKNEryvnSNSITQGSENRCRMSQAAVAFFYFSCFIFLAKMI 140
                 *****66778889999999***********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1298.39
//
Query:       CCD23621.1  [L=278]
Description: hypothetical protein NDAI_0B05890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-47  160.4   3.5    6.8e-47  159.4   3.5    1.5  1  Pet20      Mitochondrial protein Pet20
  ------ inclusion threshold ------
        7.4    7.7  11.2         14    6.8   7.2    2.3  2  Pheromone  Fungal mating-type pheromone


Domain annotation for each model (and alignments):
>> Pet20  Mitochondrial protein Pet20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   3.5   7.6e-51   6.8e-47       2     128 ..     132     265 ..     131     266 .. 0.84

  Alignments for each domain:
  == domain 1  score: 159.4 bits;  conditional E-value: 7.6e-51
       Pet20   2 lPkVptTdyleskelttdiLfaGYrPlllpvkenillveankkke........keeklneqevleeeekeieelak..esgtggiksggvngtwkkkpv 90 
                 +PkVp+T+yle+kel++d+L++GYrP+++pvken+l++ + kk++        + +++++    e+++++ e+++k  ++++ggi++gg+ngtw+++p+
  CCD23621.1 132 MPKVPMTKYLETKELSQDMLYSGYRPIMYPVKENPLFRLTLKKNSsssfpfstT-SSSSS----EKKKPQQEQMKKhyDDEYGGIMTGGINGTWRYSPR 225
                 9**************************************999888777765422.22222....223344444444115799***************** PP

       Pet20  91 iPskllpy..wsasisgmeyndefkkvPkkvvkklkPfkl 128
                 iP++llp+  ws+si+gmey++e+k vP ++vk+lkPf++
  CCD23621.1 226 IPNNLLPNkiWSMSIMGMEYYPEWKGVPFNIVKNLKPFDK 265
                 *******99*****************************96 PP

>> Pheromone  Fungal mating-type pheromone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   7.2    0.0016        14      11      45 ..      80     114 ..      31     121 .. 0.74
   2 ?    2.5   0.1     0.034   3.1e+02      17      42 ..     174     190 ..     161     210 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0016
   Pheromone  11 asssssaessesalfasssspspspalsssasasd 45 
                 +sssss+   +++++ +s+s sp p++sss+++++
  CCD23621.1  80 SSSSSSSTKRRTISSPTSTSASPPPSSSSSSPTHT 114
                 56677777777777777777777777777777665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.034
   Pheromone  17 aessesalfasssspspspalsssas 42 
                  +ss+s +f ++ss+s         s
  CCD23621.1 174 KNSSSSFPFSTTSSSS---------S 190
                 4444444444444444.........2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       975  (0.0543812); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2018.84
//
Query:       CCD23622.1  [L=522]
Description: hypothetical protein NDAI_0B05900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-12   45.8   9.7      3e-10   40.0   5.8    3.1  3  WW            WW domain
    1.4e-09   38.0   1.8    5.3e-09   36.1   1.8    2.1  1  FF            FF domain
  ------ inclusion threshold ------
      0.054   12.6   0.0      0.082   12.0   0.0    1.2  1  Citrate_synt  Citrate synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   5.8     5e-14     3e-10       5      31 .]      12      37 ..      10      37 .. 0.99
   2 !    5.9   0.0    0.0022        13      12      26 ..      79      92 ..      71      93 .. 0.86
   3 ?   -1.7   0.0      0.55   3.3e+03       7      19 ..     486     497 ..     485     497 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 5e-14
                EEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  5 WeeqwdpdsGrvYYyNheTgetqWekP 31
                W+e+++p+ G++YYyN eT++++WekP
  CCD23622.1 12 WKEYKTPN-GKKYYYNIETKQSTWEKP 37
                ********.*****************9 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0022
                TTT-EEEEETTT--E CS
          WW 12 dsGrvYYyNheTget 26
                d G ++YyN + +++
  CCD23622.1 79 D-GSKFYYNARSNRS 92
                5.99*******9988 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.55
                 EEE-TTTT-EEEE CS
          WW   7 eqwdpdsGrvYYy 19 
                 +++d + G  YY+
  CCD23622.1 486 AAVDTP-GLEYYI 497
                 578999.*****7 PP

>> FF  FF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   1.8   8.9e-13   5.3e-09       3      51 .]     256     304 ..     254     304 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 8.9e-13
                 HHHHHHHHHHCSSS-TTSSHH.HHHHHCTTSCCCHHGTSHHHHHHHHHHH CS
          FF   3 reaFkeLLkehkeitpkstWs.eikkilenDpRYlalldkseReelFedy 51 
                 ++aF+eLL+ +k ++ +stWs + ++i+e    ++ + ++seRee+Fed+
  CCD23622.1 256 KQAFFELLDKNK-LDMYSTWSvQSRRIIERPTIFYSISNDSEREEIFEDW 304
                 89**********.********55666889999*****************8 PP

>> Citrate_synt  Citrate synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.4e-05     0.082      12      74 ..     374     436 ..     368     519 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
                   SEEEETTTTEEEETTEEHHHHHHHHS-HHHHHHHHHH..SS---HHHHHHHHHHHHCTTS--HHH CS
  Citrate_synt  12 isevdgekgelrYRGydieeLaeekssfeevaylLlt..gelPtkeelkefkeelaearklpekv 74 
                   i++  +++g+ +++ y i++ + +k+++e ++ lLl+  ++l ++e  ++f+e ++++    ek+
    CCD23622.1 374 IFQDIKRQGKSLFKDYRIKDWIPDKKELEKTVSLLLFyyKKLSEQERCDKFQEYVTKHYG--EKI 436
                   55555678999***********999*****99997654599****************842..232 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1541  (0.0859501); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 3719.42
//
Query:       CCD23623.1  [L=360]
Description: hypothetical protein NDAI_0B05910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1383  (0.0771376); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                       166  (0.00925874); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 2400.00
//
Query:       CCD23624.1  [L=235]
Description: hypothetical protein NDAI_0B05920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-15   56.3   0.0    2.8e-15   55.7   0.0    1.4  1  SH3_1     SH3 domain
    3.8e-13   49.1   0.0    5.9e-13   48.4   0.0    1.3  1  SH3_9     Variant SH3 domain
    3.2e-10   39.5   0.0    4.8e-10   39.0   0.0    1.3  1  SH3_2     Variant SH3 domain
  ------ inclusion threshold ------
       0.26   11.2  18.1       0.31   11.0  18.1    1.1  1  TFIIA     Transcription factor IIA, alpha/beta subunit
        3.2    7.7  18.9        7.7    6.5  18.9    1.7  1  DUF2076   Uncharacterized protein conserved in bacteria (DUF2
        3.3    8.4  20.8       0.74   10.5  16.6    1.9  2  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   9.3e-19   2.8e-15       2      48 .]      63     107 ..      62     107 .. 0.97

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 9.3e-19
                 ESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   2 AlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 A+Y++e++++++L +k GD+i+v+ek   +W+kg+++  g++G++Ps
  CCD23624.1  63 AIYPFEPQQEGDLALKAGDKIQVIEKPSPEWFKGKCN--GQVGIFPS 107
                 9************************************..69*****8 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0     2e-16   5.9e-13       1      48 [.      63     110 ..      63     111 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 2e-16
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsltGrtGlvPanyv 48 
                 A+yp+ep+++  L L +GD i vie++++ W+ g+ +G+ G +P+nyv
  CCD23624.1  63 AIYPFEPQQEGDLALKAGDKIQVIEKPSPEWFKGKCNGQVGIFPSNYV 110
                 89*********************************************9 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.6e-13   4.8e-10       7      56 ..      66     112 ..      60     113 .. 0.91

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.6e-13
                 -B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEECCCEEEEEGCGEEE CS
       SH3_2   7 dyvgedkseLsfkkGdvikvlslgskdsdgwwegevgGrvGlfPsslvee 56 
                  ++++ ++ L +k+Gd i+v+   +k s++w +g  +G+vG+fPs++v++
  CCD23624.1  66 PFEPQQEGDLALKAGDKIQVI---EKPSPEWFKGKCNGQVGIFPSNYVRP 112
                 588999999************...************************98 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0  18.1    0.0001      0.31      86     218 ..      68     202 ..      15     223 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
       TFIIA  86 tsqslpslvipagksvqslta..nssaataatfslpakleppvqipagvtlqtasgqlykvnv..qasgaqqiaaqplqqvvqqsqgsaaqssvaalqa 180
                 ++q++  l+ +ag ++q  ++   +  +++ + ++ +  + +v    + t q+ +++l+      qas+ +q +++  + +    q++   +s++  q+
  CCD23624.1  68 EPQQEGDLALKAGDKIQVIEKpsPEWFKGKCNGQVGIFPSNYVRPAFSGTSQPSKTRLTPGPPqyQASVETQSIHSSSNVS---YQPPFPPASTNYYQQ 163
                 444455555555555555543232222333333333333333333333344444433322211224444444443333333...556666666666665 PP

       TFIIA 181 qsqqaqalaepqqq.lekqqqqqqqqqqqqqqqqvqqqq 218
                   qq qa+  p  q  ++ qqq+qqq+qqqq+qq++ ++
  CCD23624.1 164 PAQQPQAQYIPPPQpVQQVQQQVQQQPQQQQPQQQHHHH 202
                 544455555555552443344455555544444444433 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  18.9    0.0026       7.7     104     176 ..     158     234 ..     112     235 .] 0.63

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0026
     DUF2076 104 qpspqarpaapagqalgqeeqyaaqpgyaqqqaqpqygqpaaapq....p..ggGggFLggAlqtAAGVaGGvllangl 176
                  + +q+ +++p++q  + +++   q+ ++q q+qpq++qp+++++       ++ g+ Lg+A+   AG   G+ ++n++
  CCD23624.1 158 TNYYQQPAQQPQAQYIPPPQPV--QQVQQQVQQQPQQQQPQQQHHhhtgEhlKKFGSKLGNAAIFGAGATIGSDIVNSI 234
                 2223333333333322222222..22233356777777776666666541565666********999998887666665 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.72   2.2e+03      91     113 ..      41      63 ..       9      79 .. 0.47
   2 ?   10.5  16.6   0.00025      0.74      59     127 ..     131     198 ..     107     228 .. 0.48

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.72
     Pex14_N  91 spsppaqqqqqqyrpPivtypef 113
                   +p+ + ++ +++ P   y e 
  CCD23624.1  41 RYDPNGSRESVSSQAPTLEYVEA 63 
                 11111111111113444444444 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00025
     Pex14_N  59 assas..eqaqeesasssatpqpqaasqtsqsspspsppaqqqqqqy...rpPivtypefltkppkppppPlrt 127
                 + +as  +q+ ++s++ s++p+ ++as     +++ ++paqq+q qy    +P+++ +++++++p+ +++P+++
  CCD23624.1 131 QYQASveTQSIHSSSNVSYQPPFPPAS-----TNYYQQPAQQPQAQYippPQPVQQVQQQVQQQPQ-QQQPQQQ 198
                 222223222233444444444333333.....4555556666666665555566666655555555.5556552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1459  (0.0813765); expected 358.6 (0.02)
Passed bias filter:                      700  (0.0390429); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 1791.74
//
Query:       CCD23625.1  [L=641]
Description: hypothetical protein NDAI_0B05930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-99  332.4   4.0      2e-99  332.4   4.0    1.9  3  NCA2      ATP synthase regulation protein NCA2


Domain annotation for each model (and alignments):
>> NCA2  ATP synthase regulation protein NCA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.16   2.8e+03      54      85 ..      42      73 ..      33      91 .. 0.56
   2 ?   -2.8   0.0      0.15   2.7e+03      60      78 ..     300     318 ..     263     333 .. 0.61
   3 !  332.4   4.0  1.1e-103     2e-99       2     289 .]     348     637 ..     347     637 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.16
        NCA2 54 gseiaimskesLesdleSLerMvvdFaednse 85
                g++++i +   L+ +l+ ++ +v ++++   +
  CCD23625.1 42 GDNVSIEDLTVLQNQLQTVKDIVAQLIKTIDK 73
                55556666666666666666666666554433 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.15
        NCA2  60 mskesLesdleSLerMvvd 78 
                  s + ++ + +SL+++v++
  CCD23625.1 300 PSDKDVTNNDDSLQNLVIK 318
                 4566677777788887765 PP

  == domain 3  score: 332.4 bits;  conditional E-value: 1.1e-103
        NCA2   2 lllspsslrllvnsreeilewiq.eavetvkgfwknwvvePikellktirhdegseiaimskesLesdleSLerMvvdFaednse....sklteaelek 95 
                 ll++p+s++l++n+r++il++i+ +++++++g++knw++ P++++++t++hd++s++a++sk sL+s+++SL+rM+v+F+ +ns+    s  +++++e+
  CCD23625.1 348 LLYGPNSVNLIWNHRDDILRFINeNIFQFINGLIKNWIWIPLQNIWATVKHDDSSSMAMISKGSLDSEMNSLTRMIVSFVLENSAtqspSPENTIDTES 446
                 79*********************************************************************************9899998999****** PP

        NCA2  96 lrekvregdltpvlkaYEkelrsPiknlvsGeLvraLLIQvqktKvDvevAlsgiDklLkSqeLvfgivaltPallilylllkllrallkkgrkaergk 194
                 l ++v++gdlt +++ YE++l++P+kn+vsG+L+r++LIQvqktKvD+++Al+giDk+L+Sq+Lvfg+va++Pa+li+y+l++++ +++k g+ ++r +
  CCD23625.1 447 LVREVEHGDLTRFMELYENQLHHPLKNIVSGKLIRSILIQVQKTKVDGSMALNGIDKMLQSQQLVFGVVAMSPAVLIVYFLTNSIVKFIKMGNIWSRLQ 545
                 *************************************************************************************************** PP

        NCA2 195 rarrqllrslrnierlltessaeeeekeekeeenelsykdqGllllevhvLrklaekllpkelekefleDledLekvklgvekklkvveRirrvY 289
                 +++++l+ sl+n+er+l+++++    ++++e++ne++ ++qGll+lev+++++++++++p++++ke+++D+e++ +++l+   kl+v++Ri+++Y
  CCD23625.1 546 HTKDALSISLNNVERILNNIANA---QKTNEDHNETMFYKQGLLTLEVSNMYNFGKAVIPSSRKKEWIRDVEEILSNDLNYIGKLQVIKRIYHAY 637
                 ******************97433...2333467999*******************************************99999**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1388  (0.0774165); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 4779.61
//
Query:       CCD23626.1  [L=311]
Description: hypothetical protein NDAI_0B05940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        8.1    5.8  16.7        1.9    7.8  12.9    1.8  2  SelP_N    Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1     0.078   1.4e+03      67      74 ..      64      71 ..      23      98 .. 0.61
   2 ?    7.8  12.9   0.00011       1.9     181     217 ..     221     257 ..     204     275 .. 0.43

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.078
      SelP_N 67 vnhqgeqs 74
                 n+++ +s
  CCD23626.1 64 LNQKDDES 71
                23333333 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00011
      SelP_N 181 ktehehahshkqghkhhekhghhHkekeelsesqqee 217
                 kt+++++h+h++ h hh++h++  +++ ++s++++++
  CCD23626.1 221 KTSRPQHHRHRHHHSHHSTHKKSRHSSYHKSSNSNDD 257
                 2233333333333333333333222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1582  (0.0882369); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 2609.73
//
Query:       CCD23627.1  [L=754]
Description: hypothetical protein NDAI_0B05950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.1e-254  842.4   7.4   1.2e-253  842.0   7.4    1.2  1  SKN1      Beta-glucan synthesis-associated protein (SKN1)


Domain annotation for each model (and alignments):
>> SKN1  Beta-glucan synthesis-associated protein (SKN1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  842.0   7.4    7e-258  1.2e-253       2     501 .]     243     745 ..     242     745 .. 0.99

  Alignments for each domain:
  == domain 1  score: 842.0 bits;  conditional E-value: 7e-258
        SKN1   2 sllseekekDDylhnpdp..eakadkkkkvkdlklldkrgllnvlgllllvlgllllfivlPvltylgkkekestkseaaeiltkaqvpllsairtsli 98 
                 +ll++eke+DD+lhnpdp  ea+ dk+++++d+k++dk+++ +++g++ll+++++++fivlP+lt++g++++ +   +  e+lt +q+p+lsairt+l+
  CCD23627.1 243 PLLKDEKEDDDHLHNPDPeeEARLDKRRFMDDFKNMDKKSFGGLMGIFLLFIAIIMIFIVLPALTFTGVTDHPDPVPQVIEYLTLYQYPQLSAIRTNLV 341
                 7889**************888899***************************************************99********************** PP

        SKN1  99 dpdtPesaltrkskdgkklkLvfsDefnkegrtfydGdDqfwtavdlhYaatkdlewYdpdavttadGtLelrldafknhdLnyrsGmlqsWnklCftg 197
                 d+dtP++a++r++ dg+ +kLvfsDefn++grtfydGdDq+wta+d+hY+atkdlewY+pda tt +GtL+lr+da+knh+L+yrsGm+qsWnklCft+
  CCD23627.1 342 DDDTPSNAYSRQALDGSYWKLVFSDEFNANGRTFYDGDDQYWTAPDIHYDATKDLEWYSPDASTTVNGTLKLRMDAYKNHNLYYRSGMIQSWNKLCFTQ 440
                 *************************************************************************************************** PP

        SKN1 198 galevsvsLpgkgevsGlWPglWtmGnLgRpGylasteGvWPYsYdsCDvGitpnqssadGlsylpGqrlsaCtCkgedhpspgvgRgaPeiDileaev 296
                 g++e+s++Lp++g+v+GlWPglWtmGnL+RpG+lasteGvWPYsY+sCD+Gitpnqss+dG+sylpGq+lsaCtC+gedhp+pgvgRgaPeiDi+e+ev
  CCD23627.1 441 GIIEISANLPNYGRVTGLWPGLWTMGNLARPGFLASTEGVWPYSYESCDAGITPNQSSPDGISYLPGQKLSACTCDGEDHPNPGVGRGAPEIDIIEGEV 539
                 *************************************************************************************************** PP

        SKN1 297 etekevgvasqslqvaPfdiwylpdydfveiydksvtalnsyaGgpfqqalsglttlnkewy..eeegkkfqkygleykpnddekgyitWfvgdektwt 393
                 +t  +vgvasqslqvaPfdiwy+pdyd++eiy+ ++t +n+y+Ggpfqqa+s+++tln++wy  + +++++qky++ey  nd+++gyi+Wfvgd++t+t
  CCD23627.1 540 DTVIGVGVASQSLQVAPFDIWYIPDYDYIEIYNFTTTVMNTYCGGPFQQAVSAVSTLNTTWYefGPDAGYYQKYAIEYL-NDNDDGYIRWFVGDTPTYT 637
                 **************************************************************877889***********.9****************** PP

        SKN1 394 lkakalgpngnigqRliseepmsiilnlgisnnfaaidwkelefpatlriDyvRlyqeedeesvgCDPedyptadYiekhkeaYenanltsweeagyef 492
                 ++akal+pngnig+R+is+epmsii+nlgisnn+a+idw+ + fp+t++iDyvR+yq++d++s++CDP+dypt+dYi++h  aY+n+nlt+w++ag++f
  CCD23627.1 638 IYAKALHPNGNIGWRRISKEPMSIIMNLGISNNWAYIDWQYIFFPVTMSIDYVRIYQPNDTVSITCDPTDYPTYDYIQDHLVAYTNPNLTNWKDAGFTF 736
                 *************************************************************************************************** PP

        SKN1 493 pknklldec 501
                 pkn+l+++c
  CCD23627.1 737 PKNSLTGNC 745
                 *******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 5199.06
//
Query:       CCD23628.1  [L=910]
Description: hypothetical protein NDAI_0B05960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
          0 1041.8   0.1          0 1041.6   0.1    1.0  1  Phosphorylase  Carbohydrate phosphorylase
  ------ inclusion threshold ------
      0.073   13.0   1.8       0.22   11.4   0.3    2.5  2  Mrr_cat_2      Restriction endonuclease


Domain annotation for each model (and alignments):
>> Phosphorylase  Carbohydrate phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1041.6   0.1         0         0       1     711 []     172     905 ..     172     905 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1041.6 bits;  conditional E-value: 0
                    HHCTT--HHHHHTTS--ECESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTCCG-TT-EE-GGG-EEEEESCEEE CS
  Phosphorylase   1 lkelgldleeleeqeedagLGnGGLGRLAacfldslatlelpavGygirYeyGlFkQkiedgaqveepdeWlkkgnpweiereekavevkfggkve 96 
                    l+elg++le+++eqe+dagLGnGGLGRLAacf+ds+at ++pa+Gyg+rY+yG+F Qki dg+qve+pd+Wl++gn+weier+e++++v+f+g+v+
     CCD23628.1 172 LDELGFKLEDVLEQEPDAGLGNGGLGRLAACFVDSMATENIPAWGYGLRYQYGIFAQKIIDGYQVETPDYWLNFGNAWEIERNEVQIPVTFYGYVD 267
                    5799*******************************************************************************************9 PP

                    CCTTE.....ESEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-STTTTHHCCCTTSCCHHHHCHHHHHGGGTBSS-SSSSCCHCHHHHHHHH CS
  Phosphorylase  97 eeeeee..klkvkwvdeeevlavpydvpvvGyktktvntLrLwsakaseefdleafnegdyikaveekneaeniskvLYPndsteegkeLrLkQqY 190
                    + e+++   + ++w+++e+vlav+yd+pv+G+kt++vn+LrLw+a++++efd+++fn+gdy+++v+++++ae+i+++LYPnd++e+gkeLrLkQqY
     CCD23628.1 268 RPESKSstLEPAQWIGSERVLAVAYDFPVPGFKTNNVNNLRLWQARPTTEFDFAKFNSGDYKNSVAQQQRAESITACLYPNDNFEQGKELRLKQQY 363
                    665555446789************************************************************************************ PP

                    HHHHHHHHHHHHHHHTCTTHGGGHHHHEEEEEESSTTTTHHHHHHHHHHHCC---HHHHHHHHCCCEEEEE--SSGGGS-EEEHHHHHHHSHHHHH CS
  Phosphorylase 191 flvsaslqdilrrfkkkkkdleelpekvaiqlnDtHPalaipelmriLvdeeglewdeaweitkktfaytnhtvlpealekwpvellekllprhle 286
                    f+++asl+di+rrfkk+k+ ++e+p+++aiqlnDtHP+lai+el r+Lvd+e+l+w+eaw+i+++tf+ytnhtv++ealekwp++l+ +llprhle
     CCD23628.1 364 FWCAASLHDIVRRFKKSKRPWSEFPDQIAIQLNDTHPTLAIVELQRVLVDSEKLDWHEAWDIVTHTFSYTNHTVMQEALEKWPISLFGHLLPRHLE 459
                    ************************************************************************************************ PP

                    HHHHHHHHHHHHHHHHSTT-HHHHHHHSSEE...TSCEEEHHHHHHHCCSEEEESSHHHHHHHHHTTTHHHHHHS.GGGEEE----B-CHHHCCCT CS
  Phosphorylase 287 iieeinerfleevekklpedeeklerlsiie...eekkvrmanlaivgshsvngvaalhsellkkevlkdfyely.pekfnnktnGitprrwllla 378
                    ii++in  fl++v+kk+p+d + l+r+siie   +e+++rma laivgsh+vngva+lhsel+k+++++df+++y p+kf n+tnGitprrwl++a
     CCD23628.1 460 IIYDINWFFLKDVAKKFPKDMDLLSRISIIEesnSERQIRMAFLAIVGSHKVNGVAELHSELIKTTIFADFVKFYgPSKFVNVTNGITPRRWLKQA 555
                    ******************************9877779*************************************99******************** PP

                    SHHHHHHHHHHCS...SGGCCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHH.HHSS---.....TTSEEEEEES-SCCCCTHHHHHHH CS
  Phosphorylase 379 npelaelitekig...eewvkdleeLkkLekladdkefleelaeikqenKerlaelike.kegvevd.....peslfdvqvkRlheYkRqlLnvLh 465
                    np+la+li+++++   e+++ ++ +L++L+k++d+k+f++e++e+k +nK rla+lik+ + gv++      +e+lfd+qvkR+heYkRq++n++ 
     CCD23628.1 556 NPKLAALISKTLNdpnEDYLLNMANLTELSKFVDNKDFQKEWDEVKLHNKIRLADLIKKlNDGVDIIdrehiNETLFDIQVKRIHEYKRQQMNIFG 651
                    ************877789*****************************************8889987534455689********************* PP

                    HHHHHHHHHHSTT.........S----EEEEEE----TT-HHHHHHHHHHHHHHHHHCC-TTTCCCEEEEEETT-SHHHHHHHGGG-SEEEE---T CS
  Phosphorylase 466 iitlYneikenpe.........kkvvprtvifggkaapgYalAkkiiklinsvaevvnndpevkdklkvvflenynvslaekiipaadlseqista 552
                    +i++Y ++k++ e         kk+  ++ ifggk+apgY++Ak iiklinsvaevvnndpe++d lkv+f+++ynvs+ae+iipa+dlse+ista
     CCD23628.1 652 VIYRYLAMKTMLEngaaieevaKKFPRKVSIFGGKSAPGYYMAKLIIKLINSVAEVVNNDPEIEDLLKVFFIPEYNVSKAEIIIPASDLSEHISTA 747
                    *********993335667677567888999****************************************************************** PP

                    TTSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHHHHHHHHHHT--HHHHHHH-HHHHHHHHHHHCTTTTTTSTTTTHHHHHHH CS
  Phosphorylase 553 gkeASGTgnmkfmlnGaltigtlDGanvEiaeevgeenifiFGltaeeveelkkkgynpkelyekdpelkevldalesgtfsekekeefkelvdsl 648
                    g+eASGT+nmkf++nG+l+igt+DGanvEi++e+ge+nif+FG+ +e+veel+ ++  + ++ +  ++l++vl+ +++gtfs+++++efk+lvd +
     CCD23628.1 748 GTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNIFLFGNLSENVEELRYNH--QVHTQDLPADLEKVLEYVANGTFSPENPNEFKPLVDGI 841
                    *****************************************************994..4455666778**************************** PP

                    CTCC-TT-CHHHHHHHHHHHHHHHHHHC.SHHHHHHHHHHHHHCGGGGBHHHHHHHHHHHTTTS CS
  Phosphorylase 649 lekkDeylvlaDfesYveaqekveeaYk.dkkewakksilniaksgkFssDrtikeYaeeiWkv 711
                     ++ D+ylv +Df+sY+++qe v++ ++ +k+ew kksil++a++g+FssDr+i+eYa++iW+v
     CCD23628.1 842 KHHGDYYLVSDDFDSYIATQELVDQVFHeNKDEWLKKSILSVANIGFFSSDRCIEEYADTIWNV 905
                    **************************963789******************************97 PP

>> Mrr_cat_2  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.18   1.6e+03      48     121 ..      55     139 ..      39     145 .. 0.66
   2 ?   11.4   0.3   2.4e-05      0.22       6      54 ..     593     641 ..     588     660 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.18
   Mrr_cat_2  48 QcKfYaedekiqkedidsFlsasgkk...............kftkrliisTtdkwsknaeealknqkipvkridledLeeseidwskls 121
                 Q+K + + e++q + id   ++ +++               ++ ++lii    +w+k+ ++    + + v  ++le L   ++d++ ++
  CCD23628.1  55 QVKKFTDGEDFQDRFIDHVETTLARSlyncddlaayeatsmSIRDNLII----DWNKTQQKFTTRDPKRVYYLSLEFLMGRALDNALIN 139
                 6677777777777666666666666666666666666555566666666....577777777777777777777777777777766655 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 2.4e-05
   Mrr_cat_2   6 yaeefkeVwlwkewpeekrlgkkDtGIDlVakerkegeywAIQcKfYae 54 
                  ++e++eV l++ ++ ++ ++k   G+D++ +e+ +++++ IQ+K+ +e
  CCD23628.1 593 FQKEWDEVKLHNKIRLADLIKKLNDGVDIIDREHINETLFDIQVKRIHE 641
                 45569**********9999**************************8665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (910 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6444.40
//
Query:       CCD23629.1  [L=266]
Description: hypothetical protein NDAI_0B05970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-11   42.8   3.0    7.4e-11   42.7   0.4    2.1  2  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.4   4.1e-15   7.4e-11       2      66 .]      73     143 ..      72     143 .. 0.87
   2 ?   -0.3   0.1      0.11     2e+03      12      33 ..     211     248 ..     203     257 .. 0.59

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 4.1e-15
                      -HHHHHHHHHHHHHHHHHGGGS-H..........HHHHHHHHHHHHHTTHHHHHHHHTT---HHHHHHHHHHH CS
  CDP-OH_P_transf   2 lPnaiTllrlllsvlailllltyyp........lvlailllliasltDalDGklARrlnqvstlGkllDslaD 66 
                      l++ iT+l+ ++++++i+    ++         +  a +++++ + +D+lDG++AR +n +s +G+ lDslaD
       CCD23629.1  73 LADYITMLNGFSGFYSIISC--LRFtltdkphyVQRAHFFIFLGMCFDFLDGRVARLRNRSSLMGQELDSLAD 143
                      6899************9855..5545699999888888888899999***********99555*********9 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.11
                      HHHHHHHHGGGS-H...................HHHHHH CS
  CDP-OH_P_transf  12 llsvlailllltyyp.................lvlaill 33 
                      ll vl + l++ y++                 +   ill
       CCD23629.1 211 LL-VLGMALMVHYDHildniplglirdgkvfeFHPIILL 248
                      33.445555667777666666666666666654444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2080.80
//
Query:       CCD23630.1  [L=222]
Description: hypothetical protein NDAI_0B05980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.0   8.6       0.19   11.3   8.6    1.2  1  SR-25     Nuclear RNA-splicing-associated protein
       0.96    9.8   4.9        1.8    8.9   4.5    1.8  1  Orf78     Orf78 (ac78)
        3.2    6.2   9.3        3.2    6.2   9.3    1.1  1  Macoilin  Macoilin family
        3.5    5.9   9.4        4.4    5.5   9.4    1.2  1  Menin     Menin


Domain annotation for each model (and alignments):
>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   8.6   4.2e-05      0.19      39      88 ..     158     205 ..     145     210 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.2e-05
       SR-25  39 rkassasekeeerskekkkkkrrrssssssssssssssssssssssssdd 88 
                   +++++++   +++ ++  ++++++s+ ++ ss+sssss+ ss+ss+++
  CCD23630.1 158 TTNNTTNNT--ANNTTNNTANNTTNNSTNNTTSSTSSSSSAVSSHSSENG 205
                 222222222..333333344444467777777777778788887877765 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.5   0.00041       1.8       9      56 ..     139     200 ..     132     222 .] 0.45

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00041
       Orf78   9 gkke..kvdyIPLKLAlndldnddndkaen.kkekksaaeknditekesn...........a 56 
                 ++++   vd IP     n+++n+++++++n ++++++++++n++t+++++           +
  CCD23630.1 139 SSTDipIVDFIPGNSTTNNTTNNTTNNTANnTTNNTANNTTNNSTNNTTSstsssssavssH 200
                 55554468888888888886333333322202222222222222222222344444444441 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   9.3   0.00072       3.2     303     353 ..     154     204 ..      51     212 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00072
    Macoilin 303 ssgsesellveesvkskssssssssnknskkasagsagssnssskkhsess 353
                 +++++++ ++++ ++++++ + +++++ns +++++s++ss+s+  +hs+++
  CCD23630.1 154 TTNNTTNNTTNNTANNTTNNTANNTTNNSTNNTTSSTSSSSSAVSSHSSEN 204
                 112222222222222222222223333333333333333333333444443 PP

>> Menin  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.4   0.00099       4.4     524     575 ..     156     204 ..     107     213 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00099
       Menin 524 aeqkqkkageeserreannnnnsksnsekeadkkasttsnggeasstpsses 575
                  ++ ++++ ++++++ +n  nn+ +ns ++    +s+ts +++a s++sse 
  CCD23630.1 156 NNTTNNTTNNTANNTTNNTANNTTNNSTNN---TTSSTSSSSSAVSSHSSEN 204
                 111111111111111111111111111111...1222222222222233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1945  (0.108483); expected 358.6 (0.02)
Passed bias filter:                      678  (0.0378158); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 1588.52
//
Query:       CCD23631.1  [L=1647]
Description: hypothetical protein NDAI_0B05990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.7e-186  609.3  53.8    2.4e-32  111.7   0.1    8.1  9  Clathrin         Region in Clathrin and VPS
    9.5e-27   92.7   0.9    5.9e-26   90.2   0.3    2.8  3  Clathrin_H_link  Clathrin-H-link
    2.5e-23   81.2   4.8    5.5e-06   26.4   0.2    6.0  5  Clathrin_propel  Clathrin propeller repeat
    1.5e-08   33.8   0.5    1.5e-08   33.8   0.5    2.9  3  Clathrin-link    Clathrin, heavy-chain linker
  ------ inclusion threshold ------
        7.4    6.9   9.4         21    5.5   0.0    5.8  8  TPR_7            Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.4   8.5e+03      75     116 ..     155     197 ..     145     201 .. 0.50
   2 ?   -3.7   0.1       2.7   9.6e+03     106     123 ..     377     394 ..     367     398 .. 0.58
   3 !   65.5   0.1   1.3e-21   4.6e-18       4     135 ..     546     677 ..     543     684 .. 0.88
   4 !   71.2   2.7   2.2e-23   7.8e-20       3     142 ..     694     832 ..     692     833 .. 0.91
   5 !  106.1   1.9   3.6e-34   1.3e-30       2     141 ..     840     975 ..     839     977 .. 0.95
   6 !  111.7   0.1   6.8e-36   2.4e-32       2     138 ..     986    1124 ..     985    1128 .. 0.97
   7 !   93.3   3.7   3.4e-30   1.2e-26       2     142 ..    1135    1273 ..    1134    1274 .. 0.97
   8 !  102.8   1.0   3.8e-33   1.4e-29       1     141 [.    1280    1423 ..    1280    1425 .. 0.96
   9 !   90.6   1.2   2.3e-29   8.2e-26       1     142 [.    1429    1570 ..    1429    1571 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.4
                 HHHHHHHT-SSHHHHHH.HHHTTXTHSSHSSXSSSSHCSCHHH CS
    Clathrin  75 kvaklcekadlyeeavi.lykkinefkkaisllkklkdfddai 116
                 +++++  +a+l  +av+ +++ +++++  i+l+ k  ++ +ai
  CCD23631.1 155 QIINFVANAKLDWFAVVgILQENGRIAGKIQLYSKQRNISQAI 197
                 5555555555433444445555555555555544444444444 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.7
                 SSSSHCSCHHHHTTTTTX CS
    Clathrin 106 lkklkdfddaieyaakvs 123
                 l + +d++ a+++aa ++
  CCD23631.1 377 LLNQNDYQTAAKVAASSQ 394
                 344466666666666655 PP

  == domain 3  score: 65.5 bits;  conditional E-value: 1.3e-21
                 CCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTS..S---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHS CS
    Clathrin   4 ltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflk..knnnydlekvaklcekadlyeeavilykkinefk 100
                    ++d++++ ++f +++++++ +++L ++lk+d++++ +lqt++le ++ + + q+++++l    +++yd+++va+l+eka+l+++a++ y++i ++k
  CCD23631.1 546 TASQLDIEKIADIFFSQNHIQQGTSLLLDALKTDTPDQGHLQTRVLEVNLLHAP-QVADAILGnnIFSHYDKPTVAQLSEKAGLFQRALENYTDITDIK 643
                 56789************************************************6.********777889****************************** PP

                 SHSSX.SSSSHCSCHHH..HTTTTTXXSHHHHHHHHHH CS
    Clathrin 101 kaisl.lkklkdfddai..eyaakvsnpelweklleal 135
                 +   + ++++++ + ++   y++k++ ++ +++l   +
  CCD23631.1 644 R---CiVHTDSL-PIDWlvAYFGKLNVEQSLACLRALM 677
                 *...74566544.444448************9997544 PP

  == domain 4  score: 71.2 bits;  conditional E-value: 2.2e-23
                 CCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHT..TXTH CS
    Clathrin   3 eltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykk..inef 99 
                 +++d +    ++klf e++ +e l++yL ++++    e++++  +++e++ak+++++e+e++++ n+ yd+e+v +++++a+l ++ +++  +  +n++
  CCD23631.1 694 KFSDLLGSATLIKLFDEYNATEGLYYYLASLVN--LTEDKDVVYKYIETAAKMKQFNEIERIVRDNSVYDPERVKNFLKDANLEDQTPLVVVCdrFNFV 790
                 5667777889**********************5..4599*************************************************9666666**** PP

                 SSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin 100 kkaisllkklkdfddaieyaakvsnpelwekllealldkkpfe 142
                 +++i  + +++   + ie+++k+ np   +++++alld +++e
  CCD23631.1 791 HELIL-YLYKNHNMKFIETYVKQINPSRTAQVVGALLDMDCDE 832
                 **998.88866777788*********************99986 PP

  == domain 5  score: 106.1 bits;  conditional E-value: 3.6e-34
                 CCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHS CS
    Clathrin   2 ieltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykkinefk 100
                 +++  +++++++ +++e++++l++ll++Le+ l+++s+e + +++al+++y+++++   +e+flk+n++yd+  v+++cek+d+y +a+i y+k  +++
  CCD23631.1 840 QSVLGQVPIDELTTEVEKRNKLKLLLPFLEATLAQGSQE-QTVFNALAKIYIDSNN--SPEKFLKENDQYDTLDVGRYCEKRDPY-LAYIAYDKGHNDD 934
                 56677899**************************99999.***************7..***************************.************* PP

                 SHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSH CS
    Clathrin 101 kaisllkklkdfddaieyaakvsnpelwekllealldkkpf 141
                 ++i +++++ +++ +++y+ ++s+pelw+k+l+a + ++++
  CCD23631.1 935 DLIRITNENTMYKYQARYLLQRSDPELWNKVLDAENVHRRQ 975
                 ********************************997776665 PP

  == domain 6  score: 111.7 bits;  conditional E-value: 6.8e-36
                  CCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS..--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTT CS
    Clathrin    2 ieltdpidlsrvvklfeeaglleelleyLekvlkedsk..enpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykki 96  
                  +eltdp+++s +v++f+++gl  el+e+Lek+++e s+  +n+alq +ll  ++ky++  ++ +++++++nyd++++a lc  +dl eea+++y+k+
  CCD23631.1  986 PELTDPEPVSLTVQAFMSNGLKLELIELLEKIILEPSPfnDNVALQGLLLLSAIKYEP-GKVSNYIERLENYDADEIAPLCIANDLKEEAFEIYDKH 1081
                  799*********************************99*******************6.************************************** PP

                  XTHSSHSSX.SSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSS CS
    Clathrin   97 nefkkaisl.lkklkdfddaieyaakvsnpelwekllealldk 138 
                  ++++ka+++ +++  ++d+a+ y+ k++ pe w++l  a+ld 
  CCD23631.1 1082 EMYSKALKVlVEDIMSLDRAATYVDKINTPEMWSQLGAAQLDG 1124
                  ********88*****************************9986 PP

  == domain 7  score: 93.3 bits;  conditional E-value: 3.4e-30
                  CCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHHHHHTTXT CS
    Clathrin    2 ieltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavilykkine 98  
                  i+++dp+++  v++l+e+a+++eel +yL +++k+   ++++++ +l+ +ya+ d++ e+e++l  +n  +l++v++++ + + y+ a+++y+ +++
  CCD23631.1 1135 IKAEDPSNFVNVIDLAEQAEKYEELVPYLLMARKTL--KESKIDGSLVLAYAQLDKLHEIENILAGSNVANLDQVGDKLFDLKDYKAAKLCYSSVSN 1229
                  6889*****************************765..779******************************************************** PP

                  HSSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin   99 fkkaisllkklkdfddaieyaakvsnpelwekllealldkkpfe 142 
                  ++k++s+l +l+d++ a+++a+++sn ++w+ + +a+++kk+f+
  CCD23631.1 1230 YSKLASTLVYLDDYQGAVDTARRASNIKVWKLVNNACIEKKEFR 1273
                  *****************************************986 PP

  == domain 8  score: 102.8 bits;  conditional E-value: 3.8e-33
                  CCCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---.S-TTHHHHHHHT-SSHHHHHHHHHTT CS
    Clathrin    1 lieltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnn.ydlekvaklcekadlyeeavilykki 96  
                  l+++ ++++l+++v+++e  g++eel+++ e+++ + +++++ ++t+l++ly ky++ ++  ++lk +++ ++++kv++   +a+l++e+v+ly ++
  CCD23631.1 1280 LNLIIHAEELDELVDQYEASGYFEELISLFEAGM-GLERAHMGMFTELAILYSKYQP-SKTFDHLKLFWSrINIPKVIRAVDDAHLWKELVFLYAHY 1374
                  678899****************************.999******************6.*************************************** PP

                  XTHSSHSS.X.SSSSHCSCHHH..HTTTTTXXSHHHHHHHHHHHSSXSH CS
    Clathrin   97 nefkkais.l.lkklkdfddai..eyaakvsnpelwekllealldkkpf 141 
                  +e+++++  +  k  kdfd+    e+++kvsn e+++k+++++++++p+
  CCD23631.1 1375 DEWDNSALtMiEKSTKDFDHGYfkEVIVKVSNLEIYYKAINFYVKEHPS 1423
                  *****999878*********************************99986 PP

  == domain 9  score: 90.6 bits;  conditional E-value: 2.3e-29
                  CCCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---S-TTHHHHHHHT-SSHHHHHH...HHH CS
    Clathrin    1 lieltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnnydlekvaklcekadlyeeavi...lyk 94  
                  l+ lt+++d++r+vk+f + ++l++++++L +vl   +k+n+ ++ a+ +l ++++d++ l++ ++ ++++d++ +a ++e +dl+ + +i   ly+
  CCD23631.1 1429 LTVLTPRLDIPRTVKQFVTSDNLPLIKPFLINVL---PKNNTVVNAAYHDLVIEEEDYKALQDAVDAYDKFDQIGLAARLESHDLVFFKKIaalLYR 1522
                  56799*****************************...99***********************************************99888888*** PP

                  TTXTHSSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSXSHH CS
    Clathrin   95 kinefkkaisllkklkdfddaieyaakvsnpelwekllealldkkpfe 142 
                  ++++++k + +lk++k+++daie+aa +++ +++e+ll +++d +++e
  CCD23631.1 1523 RNKKWAKCLAILKNEKLWKDAIETAAISQDAKVVEELLTYFVDTGNKE 1570
                  *******************************************99876 PP

>> Clathrin_H_link  Clathrin-H-link
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.3   1.6e-29   5.9e-26       1      66 []     362     425 ..     362     425 .. 0.99
   2 ?   -2.3   0.0       1.2   4.4e+03       5      30 ..    1067    1092 ..    1064    1096 .. 0.88
   3 ?   -2.7   0.0       1.6   5.6e+03      15      35 ..    1210    1229 ..    1209    1230 .. 0.76

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 1.6e-29
  Clathrin_H_link   1 gLpGaddlyvqqFeqllaqgnykeAakvAaespqgiLRtpetIqrfkqvpaqpgqlspllqYFgtL 66 
                      gLpGaddl+++qFe+ll+q++y+ AakvAa+s++  LR+++tI+r+k+++a+pg++sp+l+YF+tL
       CCD23631.1 362 GLPGADDLLTKQFETLLNQNDYQTAAKVAASSQS--LRNQNTINRLKNIQAAPGTISPILVYFSTL 425
                      8*********************************..****************************98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
  Clathrin_H_link    5 addlyvqqFeqllaqgnykeAakvAa 30  
                       a+dl  + Fe + + + y++A kv +
       CCD23631.1 1067 ANDLKEEAFEIYDKHEMYSKALKVLV 1092
                       89999999**************9965 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.6
  Clathrin_H_link   15 qllaqgnykeAakvAaespqg 35  
                       +l+  ++yk Aak++ +s ++
       CCD23631.1 1210 KLFDLKDYK-AAKLCYSSVSN 1229
                       678888887.88999888765 PP

>> Clathrin_propel  Clathrin propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00039       1.4       1      33 [.      18      51 ..      18      54 .. 0.78
   2 !   12.9   0.1   2.9e-05       0.1       6      37 .]      64      94 ..      61      94 .. 0.90
   3 !   26.4   0.2   1.5e-09   5.5e-06       1      36 [.     151     189 ..     151     190 .. 0.96
   4 !   17.1   0.0   1.4e-06     0.005       6      37 .]     263     294 ..     260     294 .. 0.95
   5 !   12.1   0.1   5.2e-05      0.19       1      36 [.     302     335 ..     302     336 .. 0.96

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00039
                     CTTCEEEECCCEEEEECCEEEEEE.CETEEEEEE CS
  Clathrin_propel  1 nansqiinfptatneswlfiiain.gtkkGqvql 33
                     ++++q  +f++ t es++++ +++ +   + v +
       CCD23631.1 18 GISPQSLDFRSTTFESDHYVTVREsNEGSNTVSI 51
                     5789*******************98444444555 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.9e-05
                     EEECCCEEEEECCEEEEEECETEEEEEEEETT CS
  Clathrin_propel  6 iinfptatneswlfiiaingtkkGqvqlysve 37
                     +++ ++a+++++ ++i ++ +++  vq++++e
       CCD23631.1 64 NMGGDSAIMHPSQMVISVR-ANGTIVQIFNLE 94
                     78899**************.77777*****98 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 1.5e-09
                      CTTCEEEECCCEEEEECCEEEEEE...CETEEEEEEEET CS
  Clathrin_propel   1 nansqiinfptatneswlfiiain...gtkkGqvqlysv 36 
                      ++n+qiinf++++   w  +++i    g+++G++qlys 
       CCD23631.1 151 LNNTQIINFVANAKLDWFAVVGILqenGRIAGKIQLYSK 189
                      58***********************************96 PP

  == domain 4  score: 17.1 bits;  conditional E-value: 1.4e-06
                      EEECCCEEEEECCEEEEEECETEEEEEEEETT CS
  Clathrin_propel   6 iinfptatneswlfiiaingtkkGqvqlysve 37 
                       ++fp a ++s+++ i++  tk+G+++ly++e
       CCD23631.1 263 TNDFPIAVQVSEKYGIVYLLTKYGFIHLYELE 294
                      789****************99*********98 PP

  == domain 5  score: 12.1 bits;  conditional E-value: 5.2e-05
                      CTTCEEEECCCEEEEECCEEEEEECETEEEEEEEET CS
  Clathrin_propel   1 nansqiinfptatneswlfiiaingtkkGqvqlysv 36 
                      n++++++ f++  ++  ++i +in  kkGqv+ +++
       CCD23631.1 302 NRITAESVFTATSYHDKNGIACIN--KKGQVLAVEI 335
                      799*********************..******9997 PP

>> Clathrin-link  Clathrin, heavy-chain linker
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.61   2.2e+03       3      10 ..     155     162 ..     154     163 .. 0.88
   2 !   33.8   0.5   4.2e-12   1.5e-08       3      24 .]     339     360 ..     338     360 .. 0.96
   3 ?   -0.9   0.0       0.3   1.1e+03       3       8 ..     504     509 ..     503     510 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.61
  Clathrin-link   3 nIIPYIln 10 
                    +II+++ n
     CCD23631.1 155 QIINFVAN 162
                    6*****98 PP

  == domain 2  score: 33.8 bits;  conditional E-value: 4.2e-12
  Clathrin-link   3 nIIPYIlntLnNpdLALrlAsR 24 
                    +I+PYIln+L+N++LAL  A+R
     CCD23631.1 339 QIVPYILNKLSNVSLALTVATR 360
                    7********************9 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.3
  Clathrin-link   3 nIIPYI 8  
                     IIPY+
     CCD23631.1 504 KIIPYC 509
                    7****7 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.2   7.8e+03       7      19 ..     185     197 ..     185     198 .. 0.90
   2 ?   -0.3   0.0      0.41   1.5e+03       8      20 ..     376     388 ..     375     389 .. 0.83
   3 ?   -2.2   0.0       1.6   5.8e+03      11      24 ..     498     511 ..     495     512 .. 0.87
   4 ?   -2.7   0.0       2.3   8.2e+03       8      23 ..     622     637 ..     620     638 .. 0.75
   5 ?   -2.7   0.0       2.3   8.1e+03       2      14 ..     882     894 ..     881     895 .. 0.84
   6 ?   -2.8   0.1       2.5   8.8e+03      12      29 ..    1153    1182 ..    1149    1188 .. 0.62
   7 ?    1.2   0.0      0.13   4.7e+02       3      24 ..    1231    1252 ..    1230    1258 .. 0.85
   8 ?    5.5   0.0    0.0058        21       9      28 ..    1296    1313 ..    1289    1333 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.2
       TPR_7   7 rlysrlGdyeeAi 19 
                 +lys++++ ++Ai
  CCD23631.1 185 QLYSKQRNISQAI 197
                 58**********9 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.41
       TPR_7   8 lysrlGdyeeAie 20 
                 +  +++dy++A++
  CCD23631.1 376 TLLNQNDYQTAAK 388
                 5679*******96 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.6
       TPR_7  11 rlGdyeeAielyeq 24 
                 +l+++e+ i ++++
  CCD23631.1 498 ELQQFEKIIPYCQK 511
                 6899*******997 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2.3
       TPR_7   8 lysrlGdyeeAielye 23 
                 l ++ G +++A+e y+
  CCD23631.1 622 LSEKAGLFQRALENYT 637
                 5567889999999886 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 2.3
       TPR_7   2 LlnLarlysrlGd 14 
                 +++La +y + ++
  CCD23631.1 882 FNALAKIYIDSNN 894
                 689*****99876 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 2.5
       TPR_7   12 lGdyeeAielyeq............sLalt 29  
                    +yee++ ++              sL+l+
  CCD23631.1 1153 AEKYEELVPYLLMarktlkeskidgSLVLA 1182
                  568999999987755555555555555555 PP

  == domain 7  score: 1.2 bits;  conditional E-value: 0.13
       TPR_7    3 lnLarlysrlGdyeeAielyeq 24  
                  + La++ + l dy+ A++  ++
  CCD23631.1 1231 SKLASTLVYLDDYQGAVDTARR 1252
                  679*************987655 PP

  == domain 8  score: 5.5 bits;  conditional E-value: 0.0058
       TPR_7    9 ysrlGdyeeAielyeqsLal 28  
                  y++ G++ee+i+l+e+  ++
  CCD23631.1 1296 YEASGYFEELISLFEA--GM 1313
                  8999***********9..65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.46
# Mc/sec: 10756.78
//
Query:       CCD23632.1  [L=1043]
Description: hypothetical protein NDAI_0B06000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-49  166.3   0.5    4.7e-49  166.3   0.5    2.8  3  FACT-Spt16_Nlob  FACT complex subunit SPT16 N-terminal lobe d
    6.9e-48  162.6   0.1    6.9e-48  162.6   0.1    2.2  2  SPT16            FACT complex subunit (SPT16/CDC68)
    3.8e-29  101.9   0.0    8.1e-29  100.8   0.0    1.4  1  Peptidase_M24    Metallopeptidase family M24
    3.4e-13   49.8   0.5    1.5e-12   47.7   0.1    2.3  2  Rtt106           Histone chaperone Rttp106-like
  ------ inclusion threshold ------
       0.88    9.1  18.3        0.9    9.1   2.9    2.6  2  PPP4R2           PPP4R2


Domain annotation for each model (and alignments):
>> FACT-Spt16_Nlob  FACT complex subunit SPT16 N-terminal lobe domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.3   0.5   1.3e-52   4.7e-49       1     160 [.       6     165 ..       6     166 .. 0.96
   2 ?   -3.8   0.1       2.7   9.7e+03     106     124 ..     333     351 ..     309     361 .. 0.52
   3 ?   -0.1   0.2       0.2   7.2e+02      94     123 ..     628     657 ..     613     671 .. 0.79

  Alignments for each domain:
  == domain 1  score: 166.3 bits;  conditional E-value: 1.3e-52
                      --HHHHHHHHHHHHHHHHSHHHHHSTT-SEEEEEE-S--TT----HHHHHHHHHHSS--SSEEEEEESSEEEEEEEHHHHHTTGGGCTSTT-.S CS
  FACT-Spt16_Nlob   1 idkkafkkRlkklysawkeeeedkfssvdallvvlGksdeenpykKstalqtWLlGyefpdtlilltkkkiviltskkKaklLeplkekkeeek 94 
                      id+++f++Rl+kl+s++++ e    +s ++ll+vlG+s+ enpy+K+t+l++WLl yefp+tli+l++kkiv++ts++Kak+Le++ +  ++++
       CCD23632.1   6 IDFESFHERLQKLHSEYSNFE----NSPNSLLFVLGSSNAENPYQKTTILHNWLLNYEFPATLIALFPKKIVMITSAAKAKHLEKAIDLFKDSS 95 
                      8*****************444....4589***************************************************************** PP

                      SEEEEEEE.-S-HHHHHHHHHHHHHHHHTTTSEEEE-TT----SHHHHHHHHHHCCCGGG...EEEE-HH CS
  FACT-Spt16_Nlob  95 vevellvr.eKdadenkknfeklieaikeagkkvGvlaKdkseGkfveewkkalkeakke...eevDvsa 160
                      v++e++ r +K+ ++nkk+f +li+ +k +gk vG+ +Kd+++Gkf++ew+ +++ a ke   + vD++ 
       CCD23632.1  96 VTLEIWERiNKNIEHNKKLFVDLIDLVKGSGKVVGIPEKDSYQGKFMTEWNPIWEGAVKEnelQVVDITL 165
                      *********************************************************99988999**996 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.7
                      HHHHHHHHHHHHHHHHTTT CS
  FACT-Spt16_Nlob 106 adenkknfeklieaikeag 124
                       ++ k+ +e+++e +++++
       CCD23632.1 333 GKNPKEIYESVLEYVQKNK 351
                      2234445555555555554 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.2
                      SSEEEEEEE-S-HHHHHHHHHHHHHHHHTT CS
  FACT-Spt16_Nlob  94 kvevellvreKdadenkknfeklieaikea 123
                      ++  +++ r+Kd d  +++f+++ +  k+a
       CCD23632.1 628 QFIRSITLRSKDGDRISEAFKEIADLKKDA 657
                      566678899*************99987766 PP

>> SPT16  FACT complex subunit (SPT16/CDC68)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.1       1.9   6.8e+03      82     106 ..     490     514 ..     435     531 .. 0.47
   2 !  162.6   0.1   1.9e-51   6.9e-48       1     151 []     560     714 ..     560     714 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.9
       SPT16  82 evfreikelkkkvkkreaekkeked 106
                 e+ +e  + +k+  ++e+++k +e+
  CCD23632.1 490 EARSESDDAQKEQIRKENQRKLHEK 514
                 2333333333333333333333333 PP

  == domain 2  score: 162.6 bits;  conditional E-value: 1.9e-51
       SPT16   1 iyvdkkketillPifGiavPFhistiknvskseegdytylrinFnvpgsa...vgkkeealf.knpeaifikeltfrskdekklqevfreikelkkkvk 95 
                 i+vd+k++ti+lPi+G++vPFhi++ kn sk+eeg+ytylr+nF++pg+a    +k +e ++ ++++ +fi+++t+rskd ++++e+f+ei +lkk++ 
  CCD23632.1 560 IHVDRKSQTIILPIYGRPVPFHINSYKNGSKNEEGEYTYLRLNFHSPGTAggpSKKVTELPYdDSEDNQFIRSITLRSKDGDRISEAFKEIADLKKDAI 658
                 89**********************************************99553333334445566888******************************* PP

       SPT16  96 kreaekkekedlveqekLilskskrkprLkdlyirpniegkklaGtleaheNGlRy 151
                 kre+e+k  +d+v+q+kLi++ks r++rL+++++rp+ ++k++  t+ +heNG+Ry
  CCD23632.1 659 KREQERKVLADVVRQDKLIENKSGRTKRLDQIFVRPSPDTKRVPSTVFIHENGIRY 714
                 *******************************************************9 PP

>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   2.2e-32   8.1e-29      11     206 ..     198     419 ..     185     421 .. 0.82

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 2.2e-32
                    HHHHHHHHHHHH..TTCBHHHHHHHHHHHHHHHTT.................TCEESSSSEEEEGGGGGSTTT.BCSSSB--TTEEEEEEEEEEET CS
  Peptidase_M24  11 saaleavleaik..pgvterelaaeieattlkrhg.................arglafppivasgenaavlhy.tpndrvlkegdlvlidagaeyd 86 
                    +++++av e++k      +++++++i+++++ ++                    ++ ++pi++sg++ ++    + ++++l  + ++l  +g++y+
     CCD23632.1 198 DEMVRAVDEELKitNAKLSDKIENKIDDAKFLKKIapdlaelcptyhklnidLLDWTYSPIIQSGKKFDLRVSaRSSNDQLYGNGCILASCGIRYH 293
                    555566655444113334555666666554444335666677777777889999***************98885778******************* PP

                    TEEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHH.C-STTSBHHHHHHHHHHHHHHT..TBCCGBSSCSEEEESSSSSEEEEEESSSTTCSSB-- CS
  Peptidase_M24  87 gyasDitrTvlvGkftpeqrelyeavleaqeaaik.avkpGvtlseidaaarevlesa..glakffphglGHgvGlevhdegpsvsresndgrkle 179
                    +y+s++trT+l++ +++e+ ++y+++l  q+++++  +k G + +ei++ + e+++++  +la +++++lG  +Gle++d+ ++v + +nd+r+l+
     CCD23632.1 294 NYCSNVTRTFLID-PSEEMTNNYDFMLTLQKEIVSnHLKIGKNPKEIYESVLEYVQKNkpELAGHMTKNLGSLIGLEFRDS-NFVLNVKNDYRPLQ 387
                    ************6.8889****************7699******************9877789999**************9.998777889***** PP

                    TTBEEEEEEEEEEET.....TTEEEEEBEEEE CS
  Peptidase_M24 180 eGmvftiEpgiyfap.....geggvriedtvl 206
                    +G++f+i  g+ + +     ++++ ++ dt+ 
     CCD23632.1 388 AGDCFNISFGFNNLKdsktgNNYALQLADTIQ 419
                    ************66545553336999999985 PP

>> Rtt106  Histone chaperone Rttp106-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       2.5   9.1e+03      50      83 ..     313     350 ..     299     351 .. 0.80
   2 !   47.7   0.1   4.3e-16   1.5e-12       5      87 ..     846     928 ..     842     929 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.5
      Rtt106  50 rtfdlvvelkk....eeveFsmidqeelegidefvksk 83 
                  + d+ ++l+k    + ++++  ++e +e++ e+v+++
  CCD23632.1 313 NNYDFMLTLQKeivsNHLKIGKNPKEIYESVLEYVQKN 350
                 56788888866667677788888999999999999987 PP

  == domain 2  score: 47.7 bits;  conditional E-value: 4.3e-16
      Rtt106   5 asrkakeGlLyflekgllfgfkkPllfiplediesvsfeRvsvtsrtfdlvvelkk...eeveFsmidqeelegidefvkskgiki 87 
                  +   + ++ ++++++l+ +++ P+l+++le+ie++ +eRv++  ++fd+v+ +k+     +++++++ e+l+ +++++++ +i +
  CCD23632.1 846 NR---SAVYCMPTTDCLVQLVEPPFLVVNLEEIEICVLERVQFGLKNFDVVFIYKDfnkPVTHINTVPIESLDFLKQWLTDMDIPY 928
                 44...789**********************************************77776899*******************99976 PP

>> PPP4R2  PPP4R2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   2.9   0.00025       0.9     187     284 ..     420     518 ..     335     519 .. 0.78
   2 ?    5.0   7.6    0.0045        16     180     283 ..     928    1028 ..     912    1036 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00025
      PPP4R2 187 ipwvdektese.lspfikeidsimsvnlgfedeeekeeddneseesaseseeiteekdesvkveekdddeeddeedtdyveeeeddesedddeeeeeee 284
                 +p+ d++++ +   +  +++ s +s+ +++ede +++++d+++ +  ++  + + ++d ++k+  ++   e+  e++d+++e+  +e++++ +e+ e+e
  CCD23632.1 420 LPSADSESQAPiFLTNCTKTRSQISFYFNNEDETSQDSKDKKKANATKNGPSSSIKADLNSKILRTKLRGEARSESDDAQKEQIRKENQRKLHEKLEKE 518
                 455444444431345557777888999999999999998877666667777777788888888888888899999999888888888888888777765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0045
      PPP4R2  180 edvslvsipwvdekteselspfikeidsimsvnlgfedeeekeeddneseesaseseeiteekdesvkveekdddeeddeedtdyveeeeddesedd 276 
                   +vs+++++w +  ++ +++p +  +d   ++   + d+e  +e   ++ee ++ + ++   +des + +e+d ++ +d+ ++d +e+ ++ es+++
  CCD23632.1  928 YTVSTINLNWGTIMKSLQEDPHQFFLDGGWTFLATGSDDEGSDE---SEEEISEYEASEEDPSDESAISDEDDYSDAEDDISDDGSEDFSGGESAEE 1021
                  56788888888888888999999999988887766666666555...23334444444455677777777766666677777777777555555555 PP

      PPP4R2  277 deeeeee 283 
                   e+ +e 
  CCD23632.1 1022 GEDWDEL 1028
                  5444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1043 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1437  (0.0801495); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.92u 0.31s 00:00:01.23 Elapsed: 00:00:00.51
# Mc/sec: 6154.30
//
Query:       CCD23633.1  [L=503]
Description: hypothetical protein NDAI_0B06010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-29  101.8   0.1    8.7e-29   99.6   0.0    2.3  2  AMPK1_CBM  Glycogen recognition site of AMP-activated protein
    6.7e-28   96.8   2.4    6.7e-28   96.8   2.4    2.9  3  AMPKBI     5'-AMP-activated protein kinase beta subunit, inte
  ------ inclusion threshold ------
        9.4    6.9  30.4       0.44   11.2   7.5    3.0  3  Pex14_N    Peroxisomal membrane anchor protein (Pex14p) conse


Domain annotation for each model (and alignments):
>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0   1.5e-32   8.7e-29       1      81 [.     209     292 ..     209     296 .. 0.96
   2 ?   -3.6   0.0       2.3   1.4e+04      27      43 ..     413     429 ..     409     431 .. 0.65

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 1.5e-32
   AMPK1_CBM   1 vptvikWkggGkkVyvtGsfnnWkkkipLk...ksekdfsvilkLpeGthqykFiVDgewrvdpdlptatdeeGnlnNvievke 81 
                 vp+ i+W++gG+kVyvtGsf++W+k+i L     +++  +v l+Lp+Gth+++FiVD+e+r+++ lptatd++Gn++N++e++e
  CCD23633.1 209 VPVDITWQQGGNKVYVTGSFTGWRKMIGLIpvaGHPNLLHVKLQLPPGTHRFRFIVDNELRFSDYLPTATDQMGNFVNYLEINE 292
                 79***************************9887788**********************************************97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.3
   AMPK1_CBM  27 ipLkksekdfsvilkLp 43 
                 i+L +++++++ ++ L+
  CCD23633.1 413 ITLDQQQNNHQNMVWLT 429
                 56666677777766665 PP

>> AMPKBI  5'-AMP-activated protein kinase beta subunit, interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   4.5         3   1.8e+04      16      16 ..     172     172 ..     102     211 .. 0.60
   2 ?   -2.5   0.1       1.1   6.6e+03      23      30 ..     304     311 ..     279     328 .. 0.52
   3 !   96.8   2.4   1.1e-31   6.7e-28       4      75 .]     429     501 ..     426     501 .. 0.91

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 3
      AMPKBI  16 l 16 
                  
  CCD23633.1 172 T 172
                 1 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.1
      AMPKBI  23 saassadd 30 
                 +++++++ 
  CCD23633.1 304 QQQQQQQI 311
                 22222222 PP

  == domain 3  score: 96.8 bits;  conditional E-value: 1.1e-31
      AMPKBI   4 eppklPphLekvllnkssdsaa.ssaddssvlpiPnhvvLnHLltssikngvlavgcttRYrkKyvTtvlYkP 75 
                 +pp+lPp+Le+v+ln+ s+s++ + ++ s +lpiPnhv+LnHL+tssik+++l+v++++RY++KyvT++lY+P
  CCD23633.1 429 TPPQLPPQLENVILNSYSNSQSsNNENTSGALPIPNHVILNHLATSSIKHNTLCVASIVRYKRKYVTQILYAP 501
                 7***************666655055678899****************************************99 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   7.5   7.4e-05      0.44      67     139 ..     144     226 ..      87     232 .. 0.53
   2 ?    5.2   9.9    0.0052        31      92     117 ..     299     324 ..     275     358 .. 0.54
   3 ?   -1.8   0.2      0.72   4.3e+03     124     124 ..     435     435 ..     385     491 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.4e-05
     Pex14_N  67 qeesasssatpqpqaasqtsqsspsps.ppaqqqqqqyrpPivtypefltkppkppppPlr.........twrdllitatala 139
                 ++++ s +  ++ q++ ++s+++++++ +  +qqqqq+++++++y+++ ++p++++    +         tw++  + +++++
  CCD23633.1 144 TTDTLSYNMDQSIQKSGSNSSTPSYNNgTVDTQQQQQQQQQQQQYHNQNQSPSNTQLKNSQgnimvpvdiTWQQGGNKVYVTG 226
                 33333333333333333333333333332222222222345555555444444444333335555555556666666666655 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0052
     Pex14_N  92 psppaqqqqqqyrpPivtypefltkp 117
                 +++++qqqqqq+++++++yp+++ + 
  CCD23633.1 299 QQQQQQQQQQQQIQQQQQYPQQQPQY 324
                 11112222222223333333222221 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.72
     Pex14_N 124 P 124
                 P
  CCD23633.1 435 P 435
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2982  (0.166323); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.32s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 3328.33
//
Query:       CCD23634.1  [L=426]
Description: hypothetical protein NDAI_0B06020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-05   23.8  24.4    0.00011   22.4   4.7    3.2  3  zf-C2H2      Zinc finger, C2H2 type
      7e-05   23.3  16.6      0.026   15.3   2.8    3.2  2  zf-C2H2_4    C2H2-type zinc finger
    0.00043   20.6  26.5     0.0031   17.9   8.8    4.2  4  zf-H2C2_2    Zinc-finger double domain
  ------ inclusion threshold ------
       0.16   12.3  14.9       0.41   11.0   0.1    3.6  4  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   7.7   0.00028       1.2       1      23 []      21      43 ..      21      43 .. 0.99
   2 !   22.4   4.7   2.5e-08   0.00011       1      23 []      49      73 ..      49      73 .. 0.97
   3 ?   -1.8   0.1       1.2   5.5e+03       8      17 ..     254     263 ..     253     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00028
                EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                ++C  C++ F r ++ krH rtH
  CCD23634.1 21 FRCQFCSRGFHRLEHKKRHVRTH 43
                89********************9 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 2.5e-08
                EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2  1 ykCp..dCgksFkrksnLkrHirtH 23
                ++C+  +C+k F+r+++LkrHirtH
  CCD23634.1 49 HVCNfpHCKKGFSRRDELKRHIRTH 73
                7899********************9 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.2
                 EEESSHHHHH CS
     zf-C2H2   8 ksFkrksnLk 17 
                 k F+++s+++
  CCD23634.1 254 KEFSSQSLYN 263
                 89****9986 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   6.1   5.5e-05      0.25       1      23 [.      21      43 ..      21      44 .. 0.97
   2 !   15.3   2.8   5.8e-06     0.026       4      23 ..      54      73 ..      49      74 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.5e-05
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlkth 23
                f+C +C++ F++ ++ +rH++th
  CCD23634.1 21 FRCQFCSRGFHRLEHKKRHVRTH 43
                89********************9 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 5.8e-06
   zf-C2H2_4  4 piCgksFsskkaLlrHlkth 23
                p+C+k Fs++++L+rH++th
  CCD23634.1 54 PHCKKGFSRRDELKRHIRTH 73
                57*****************9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.2    0.0012       5.3      12      24 ..      18      30 ..      16      32 .. 0.89
   2 !   17.9   8.8   6.9e-07    0.0031       3      25 ..      37      61 ..      35      62 .. 0.93
   3 !    6.8   0.3    0.0022       9.9       2      12 ..      66      76 ..      65      79 .. 0.87
   4 ?   -1.3   0.4      0.79   3.6e+03       5      12 ..     344     351 ..     341     354 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0012
   zf-H2C2_2 12 ekpyeCplCdkaF 24
                e+p+ C +C+  F
  CCD23634.1 18 ERPFRCQFCSRGF 30
                89********998 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 6.9e-07
   zf-H2C2_2  3 rrHirkHtgekpyeCp..lCdkaFk 25
                +rH r+Htgekp+ C    C+k F+
  CCD23634.1 37 KRHVRTHTGEKPHVCNfpHCKKGFS 61
                7***************989****97 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0022
   zf-H2C2_2  2 LrrHirkHtge 12
                L+rHir+H g 
  CCD23634.1 66 LKRHIRTHLGS 76
                9*******985 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.79
   zf-H2C2_2   5 HirkHtge 12 
                 H r H++ 
  CCD23634.1 344 HKRDHKVR 351
                 9****975 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.9   0.00013      0.59       2      24 ..      21      43 ..      20      49 .. 0.88
   2 ?   11.0   0.1   9.1e-05      0.41       6      24 ..      55      73 ..      54      74 .. 0.94
   3 ?   -2.0   0.5       1.1   4.9e+03      15      23 ..     222     230 ..     221     232 .. 0.80
   4 ?   -1.5   0.1      0.78   3.5e+03       9      19 ..     254     264 ..     253     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
                 CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHlkSK 24
                 f C+ C++ F+  +  + H++++
   CCD23634.1 21 FRCQFCSRGFHRLEHKKRHVRTH 43
                 99******************994 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 9.1e-05
                 TTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz  6 lCdKyFksenaldnHlkSK 24
                 +C+K F+    l+ H++++
   CCD23634.1 55 HCKKGFSRRDELKRHIRTH 73
                 9****************97 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.1
                  HHHHCCTTS CS
  zf-C2H2_jaz  15 naldnHlkS 23 
                  ++ d Hl+S
   CCD23634.1 222 SSHDRHLSS 230
                  57899**99 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.78
                  BBBSSHHHHHC CS
  zf-C2H2_jaz   9 KyFksenaldn 19 
                  K F+s++ + n
   CCD23634.1 254 KEFSSQSLYNN 264
                  99****98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       948  (0.0528752); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3222.15
//
Query:       CCD23635.1  [L=173]
Description: hypothetical protein NDAI_0B06030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-21   73.3   0.7    1.6e-20   72.5   0.7    1.4  1  LSM       LSM domain
  ------ inclusion threshold ------
       0.22    9.8   3.2       0.27    9.6   3.2    1.0  1  Menin     Menin


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.7   1.8e-24   1.6e-20       2      66 ..      11      90 ..      10      91 .. 0.96

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 1.8e-24
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET...............EEEEEEEEEEEGGGEEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk...............ekrklglvliRGnnivlis 66
                 l++lin+k++v++++gr+++G L +fD++mNl+L+d++e +  k+               ekr+lgl+++RG+++++ +
  CCD23635.1 11 RLNDLINYKLRVITQDGRVYIGELLAFDKYMNLILSDCVEERIPKTqlpklrnkvqdsikiEKRVLGLTILRGEHVLTTV 90
                699***************************************9999******************************9875 PP

>> Menin  Menin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.2     3e-05      0.27     482     586 ..      59     162 ..      45     167 .. 0.47

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 3e-05
       Menin 482 skkeeksksseqlPttladltaacgekilnpdfllqggdqplaeqkqkkageeserreannnnnsksnsekeadkk...asttsnggeass..tpsses 575
                  k  +k ++s +  +++  lt   ge++l         d+pl ++k++ a  ++++++ ++n++ ++n++k ++ +   +s+++  ++  +   +ss  
  CCD23635.1  59 PKLRNKVQDSIKIEKRVLGLTILRGEHVLTTV----VEDKPLLSKKERVALLNNQKKKVQKNKKQNKNKNKVSKDSttnKSASASVSS--GsrFNSSGN 151
                 55566666666666666667777777776543....2456666555554444444444333322222222222221000222211111..122345555 PP

       Menin 576 eaavespsehk 586
                 +a+   p+++k
  CCD23635.1 152 NAQTGVPRQTK 162
                 56666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2691  (0.150092); expected 358.6 (0.02)
Passed bias filter:                      765  (0.0426683); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1233.49
//
Query:       CCD23636.1  [L=168]
Description: hypothetical protein NDAI_0B06040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.3e-20   70.6   2.0    5.3e-20   70.6   2.0    2.3  3  CHZ         Histone chaperone domain CHZ
  ------ inclusion threshold ------
        7.4    7.5  12.8        1.5    9.8   6.6    2.2  2  TT_ORF2     TT viral ORF2


Domain annotation for each model (and alignments):
>> CHZ  Histone chaperone domain CHZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   1.3      0.96   8.6e+03      19      27 ..      45      52 ..      45      53 .. 0.63
   2 !   70.6   2.0     6e-24   5.3e-20       1      34 []     106     139 ..     106     139 .. 0.98
   3 ?   -7.8   4.8         2   1.8e+04       2       5 ..     155     158 ..     154     161 .. 0.48

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.96
         CHZ 19 RRTRgktiD 27
                RR ++++ D
  CCD23636.1 45 RR-KRRNYD 52
                55.777766 PP

  == domain 2  score: 70.6 bits;  conditional E-value: 6e-24
         CHZ   1 eeedeLeEIDtsNIIsgGRRTRgktiDfakaaek 34 
                 eeed+L+EIDtsNII+gGRRTRgk+iDf+k aek
  CCD23636.1 106 EEEDDLAEIDTSNIITGGRRTRGKVIDFKKTAEK 139
                 8*******************************97 PP

  == domain 3  score: -7.8 bits;  conditional E-value: 2
         CHZ   2 eede 5  
                 ++de
  CCD23636.1 155 DDDE 158
                 4554 PP

>> TT_ORF2  TT viral ORF2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.6   0.00017       1.5      45     122 .]      38     107 ..      11     107 .. 0.57
   2 ?    1.4   0.4     0.064   5.8e+02      73      98 ..     135     159 ..     116     167 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00017
     TT_ORF2  45 leepqgkrpkrklilrqspalpaakeekkklakwlettgedaetgpseegdgttgdaededldegdlDeLfaedfaee 122
                 +++p+ kr kr+    + +++ a++e+ +k +k l       +t  s++++g+  d++  dld+++lD L+++d +ee
  CCD23636.1  38 RNKPEKKRRKRRNYDAYDEEV-AKEEAEEKTQKKL-------KTDSSKGDQGEIIDEDASDLDDAKLDMLMGKDVDEE 107
                 222333333333222222233.3333333333333.......3333334445555555679************99885 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.064
     TT_ORF2  73 kklakwlettgedaetgpseegdgtt 98 
                 k+++k   ++ e+ ++ p +e+d+++
  CCD23636.1 135 KTAEKLE-GKKEEEAAMPTNEDDDEE 159
                 3333333.344444443555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2373  (0.132355); expected 358.6 (0.02)
Passed bias filter:                      690  (0.0384851); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 1226.31
//
Query:       CCD23637.1  [L=973]
Description: hypothetical protein NDAI_0B06050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1614  (0.0900218); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.39
# Mc/sec: 7390.71
//
Query:       CCD23638.1  [L=1019]
Description: hypothetical protein NDAI_0B06060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1019 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1695  (0.0945396); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.40
# Mc/sec: 7699.50
//
Query:       CCD23639.1  [L=215]
Description: hypothetical protein NDAI_0B06070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.3e-40  138.4  37.1    9.4e-39  133.6  37.1    2.0  1  DUF5364     Family of unknown function (DUF5364)
  ------ inclusion threshold ------
      0.054   13.9   0.2       0.11   12.9   0.2    1.5  1  DUF1717     Viral domain of unknown function (DUF1717)
       0.45   10.3  23.7        1.5    8.7   3.0    2.8  2  MSL1_dimer  Dimerisation domain of Male-specific-Lethal 1
        2.4    8.1   4.9        4.5    7.3   4.9    1.4  1  ApoO        Apolipoprotein O


Domain annotation for each model (and alignments):
>> DUF5364  Family of unknown function (DUF5364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6  37.1   2.1e-42   9.4e-39       1     185 []       7     215 .]       7     215 .] 0.73

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 2.1e-42
     DUF5364   1 KkdNRkkFqdKqklKrkHaTpSdRKYralnkqeeaeee......eeekeeeeeepelpsNedRYhedvalafddle.deeknaevnkklkevlkere.e 91 
                 Kk+NRkkF++ q+ K++HaT+SdRKY+a+nkq++++++      +e +++  ee+e+psN++RYhed++laf++l  d+++n e+nkklk+vl++r  +
  CCD23639.1   7 KKENRKKFSENQRSKNRHATQSDRKYKAINKQKQQQQQqlqekeKEGQDTVVEEKEPPSNAYRYHEDIDLAFEELLiDDNDNLEINKKLKNVLNKRVnN 105
                 9********************************999888876555556667799********************999********************55 PP

     DUF5364  92 eeeaekedaakskealtkkdLesmdvkeLNklLg............rkvaenetsskeaaapkssekskeekk....saeeakkkksaktkeslvPeeL 174
                 +++ e  +++k  ++ltkk L++ d+k+LN+lL+            r++ +n+++++   ++++ e+++++ +    s+e+a +k++a t+++l+P+eL
  CCD23639.1 106 DDTDELLEQTKVDKPLTKKMLDNLDIKSLNNLLKpslrsldnadagREHLNNNKDANDDDQSATIEQQQQQLPsprmSNERAPNKTNAATSNTLLPSEL 204
                 5588888899999*******************973332222222222222222222222222111111111111111333444455555556******* PP

     DUF5364 175 eedqdFLDsll 185
                  e+q+FLDsll
  CCD23639.1 205 TEEQSFLDSLL 215
                 *********97 PP

>> DUF1717  Viral domain of unknown function (DUF1717)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   2.5e-05      0.11       2      35 ..      98     131 ..      97     141 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.5e-05
     DUF1717   2 llnflvnedisdelldcieedkglshemieevli 35 
                 +ln  vn+d +dell+  + dk l+++m++++ i
  CCD23639.1  98 VLNKRVNNDDTDELLEQTKVDKPLTKKMLDNLDI 131
                 69999************************98765 PP

>> MSL1_dimer  Dimerisation domain of Male-specific-Lethal 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  13.0    0.0017       7.5      22      34 ..      41      53 ..      39      56 .. 0.88
   2 ?    8.7   3.0   0.00033       1.5      20      28 ..     170     178 ..     166     180 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0017
  MSL1_dimer 22 QQQqqLqnKnKEI 34
                QQQqqLq K+KE 
  CCD23639.1 41 QQQQQLQEKEKEG 53
                9**********95 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00033
  MSL1_dimer  20 IEQQQqqLq 28 
                 IEQQQqqL 
  CCD23639.1 170 IEQQQQQLP 178
                 9******95 PP

>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.9   0.00099       4.5       9      67 ..       8      68 ..       2      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00099
        ApoO  9 seeptdrLeegvrslRksle..pytsavqdelnkvkskvetaeqsvtdtiasLkeppedll 67
                +e++++  e++ ++ R++++  ++++a++++ ++++++++++e+ ++dt+ + kepp + +
  CCD23639.1  8 KENRKKFSENQRSKNRHATQsdRKYKAINKQKQQQQQQLQEKEKEGQDTVVEEKEPPSNAY 68
                467788889999999999883358****************************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3187  (0.177757); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.38
# Mc/sec: 1681.74
//
Query:       CCD23640.1  [L=161]
Description: hypothetical protein NDAI_0B06080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00036   20.3   1.8    0.00036   20.3   1.8    2.7  2  PNRC      Proline-rich nuclear receptor coactivator motif
  ------ inclusion threshold ------
       0.75    9.9   5.4       0.28   11.3   1.5    1.8  2  P_C       P protein C-terminus
       0.96    6.5  12.1        1.1    6.3  12.1    1.0  1  GREB1     Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> PNRC  Proline-rich nuclear receptor coactivator motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   3.8         3   1.8e+04      10      13 ..     129     132 ..     123     136 .. 0.58
   2 !   20.3   1.8     6e-08   0.00036       1      20 []     140     160 ..     140     160 .. 0.99

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 3
        PNRC  10 PePS 13 
                  +PS
  CCD23640.1 129 SSPS 132
                 3333 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 6e-08
        PNRC   1 YAGsaF..snSPePSsLPlPsF 20 
                 +AGs+F  +++ e SsLP+PsF
  CCD23640.1 140 FAGSTFanNIPLE-SSLPKPSF 160
                 9************.*******9 PP

>> P_C  P protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2       0.1     6e+02      33      82 ..      14      61 ..       5      75 .. 0.49
   2 ?   11.3   1.5   4.7e-05      0.28      32      86 ..      89     144 ..      59     154 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.1
         P_C 33 skakskeeddpekev.aaaalaassprhsdgarsavvvvdpdenq.pnssss 82
                s+ k k++  p+ +  + +     sp hs     a   +  + nq pn+ ss
  CCD23640.1 14 SMNKFKQQSLPNGQKpNFGH----SPSHSHSHAHAHAHSHAHLNQhPNTHSS 61
                45555555555443303333....4555544444444444444332444333 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.7e-05
         P_C  32 sskakskeeddpekevaaaa..laassprhsdgarsavvvvdpdenqpnssssaGgG 86 
                  +  k+ +++d +++ +  +      sp hs  + s+++ + p  +qpn+s  aG+ 
  CCD23640.1  89 KNYFKNSKNNDNNNNNNNNNilYYYPSPLHSSTSSSSSISSSPSFSQPNTSF-AGST 144
                 3444555555555554444434567899*********************998.5554 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  12.1   0.00018       1.1    1146    1255 ..      30     140 ..       3     159 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00018
       GREB1 1146 kvekseskdavesglsskasakselseasaaaasaseeakspkasvtseeeeseeskekekeslsketesqlsleaseqkealdakassksssssss 1242
                  +  +s s+++ +   +++++a+ ++++ +++++s ++ a ++ +sv  ++++++++++++k+  +++++++  +++ ++++ l  + s+ +ss+sss
  CCD23640.1   30 NFGHSPSHSHSHAHAHAHSHAHLNQHP-NTHSSSYTKGAVTNFNSVIHQKKTHNNENNRNKNYFKNSKNNDN-NNNNNNNNILYYYPSPLHSSTSSS 124 
                  222222222222222222222222222.23333333444444455555555555555555555554444444.333444444444444444444444 PP

       GREB1 1243 sssassP...ssscsl 1255
                  ss +ssP   ++++s 
  CCD23640.1  125 SSISSSPsfsQPNTSF 140 
                  4444444222333433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2417  (0.13481); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 1320.21
//
Query:       CCD23641.1  [L=484]
Description: hypothetical protein NDAI_0B06090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-20   73.4  31.2    2.6e-13   49.5   3.6    2.4  3  Nse5            DNA repair proteins Nse5 and Nse6
  ------ inclusion threshold ------
       0.24   11.3   8.7       0.48   10.4   8.7    1.5  1  Securin         Securin sister-chromatid separation inhibitor
          5    5.3  10.6        1.9    6.7   8.3    1.4  2  CDC45           CDC45-like protein


Domain annotation for each model (and alignments):
>> Nse5  DNA repair proteins Nse5 and Nse6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   1.1       1.2   7.4e+03     153     177 ..       7      31 ..       3      43 .. 0.54
   2 !   37.6  11.4   1.8e-13   1.1e-09     118     320 ..     104     301 ..      68     310 .. 0.78
   3 !   49.5   3.6   4.4e-17   2.6e-13     326     477 ..     339     453 ..     330     471 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 1.2
        Nse5 153 qsskkfrrrrpsslldvslkpsdvd 177
                 qs+ +++++ ++s+ld++l +++ d
  CCD23641.1   7 QSKIQQDNTSSDSSLDELLEDDEDD 31 
                 5555555555555555555554333 PP

  == domain 2  score: 37.6 bits;  conditional E-value: 1.8e-13
        Nse5 118 ldiLnefdaekygryalellrcqfflaidtiekelqsskkfr.rrrpsslldvslkpsdvddnedwsllsfenpyssyislldkktsvlsnfllnrkls 215
                 ++  +++    +  ++++++++   la d  +k + ++ k   +r+++sl+d +lk+ ++ +++dw+++  ++    + ++ d+++  ++    n+   
  CCD23641.1 104 VSSMEKLNELIDLANNSPIKSSVVDLAFDKSKKTYEERLKLVgTRINDSLIDMILKEHISFKYKDWHFIDTNYDPMIISEIFDDDELTFF----NLNKL 198
                 555555555555566666666666666666666666665554168899**********************99988777777788776666....66666 PP

        Nse5 216 qkgefcneilwtLsnsldkfgasqekdnlllei.......seiwmpvldllldileldlmkrqdyyiqsetenkassalslkeplltflkfildrklfk 307
                 +  e + +++++L+ +++k g + +k+n+l  +         + +  +d+++ i +++   +++ y++++ +           +++ f++fildrk+++
  CCD23641.1 199 KIAEMIKLKIPNLNEFMIKCGCNMTKLNSLRISstlsennVIETFNQYDNFVEICPMEDIMKFLCYYDDDPN-----------FIKIFICFILDRKVYE 286
                 67788************************987766532222346899*************************...........**************** PP

        Nse5 308 dfcedl..fvncldk 320
                 ++  d   + n+ ++
  CCD23641.1 287 TLFLDSicCTNIYQN 301
                 *99999966666554 PP

  == domain 3  score: 49.5 bits;  conditional E-value: 4.4e-17
        Nse5 326 vrldiipvYlsivelnisnlhyrlvklspdykskkSmslRrkllsvcfklLsklfkgirlrrpkialdqfiikefrtlldfkdikqllaffllaedall 424
                  + ++i++Y+++v++  + lhyrl++l+p+++                 +   lf++  ++      + +i++ef++l+d+k + +ll+ +        
  CCD23641.1 339 NKGNFIKIYFEVVDRENYLLHYRLIRLIPELQKD---------------IINHLFENTVKNGNGGDDNIRIVEEFNNLFDNKQYHKLLYYI-------- 414
                 57899*****************************...............99999999999989999999**********************........ PP

        Nse5 425 ellkndeervryalllalgnkldpf.feevlellkdrilDlsidgstekillsi 477
                               ll++g++l pf  + ++e++kd+i+D++ +g+ ++++lsi
  CCD23641.1 415 --------------LLIYGSDLMPFgHNKTTEYFKDCIYDMTVEGN-NEVELSI 453
                 ..............************99******************.999***9 PP

>> Securin  Securin sister-chromatid separation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   8.7     8e-05      0.48      76     189 ..      17     128 ..       1     174 [. 0.68

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------GCC-----...HHHHHHHC----TT--..---------. CS
     Securin  76 kDiavkskneeesesdelsekkeselskklksallksdssdeleediEiaperqeelPyepeGYepldlslqndieklklknsPlkleisdedeeqtpl 174
                  D ++++  e+ ++++++ e+ ++ lsk +k+ +lk    d+++ d++   er++ + ++p+GY     s    i++  l +  ++ +i+   e+  +l
  CCD23641.1  17 SDSSLDELLEDDEDDEDETEEDDFILSKIIKQKPLKDVFQDNDDDDDDDDNERKKRKRINPLGYLNNK-SKFIPIKQFDL-GKNYDTKIVSSMEKLNEL 113
                 3344444444466666677778899***************************************5333.33333334444.344555566666666666 PP

                 .---------..--- CS
     Securin 175 ldldelspLekpsvd 189
                 +dl + sp++  +vd
  CCD23641.1 114 IDLANNSPIKSSVVD 128
                 666666666655555 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.3   0.00032       1.9     132     196 ..      10      87 ..       1     148 [. 0.48
   2 ?   -3.4   0.0      0.37   2.2e+03     442     495 ..     319     373 ..     300     377 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00032
       CDC45 132 sdeede.eeeeeddddeeeeeeeeedeedeeedeeeskkkrk..sksdeeeesddddersrkrrrse..........p 196
                  +++++ ++++ d+  e++e++e+e+eed+   ++  k+k      +d+++++dddd++++kr+r +           
  CCD23641.1  10 IQQDNTsSDSSLDELLEDDEDDEDETEEDDFILSKIIKQKPLkdVFQDNDDDDDDDDNERKKRKRINplgylnnkskF 87 
                 222222111222222222222222222222233333333333222334444455555555666665555555554440 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.37
       CDC45 442 eeeeeeeeeeaeeeekeeeewvknFweAy.daLdkknidlLkkglelaqslqrai 495
                 +e  +e+++e+e++++e +    nF++ y +  d++n  l  + ++l  +lq+ i
  CCD23641.1 319 SEIIRESNDENENNSDEIQMNKGNFIKIYfEVVDRENYLLHYRLIRLIPELQKDI 373
                 3344455555566666666666777766523334444444444555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1189  (0.0663171); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 3822.68
//
Query:       CCD23642.1  [L=390]
Description: hypothetical protein NDAI_0B06100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-12   46.6  28.4    1.7e-07   31.5   5.6    2.3  2  EamA            EamA-like transporter family
    6.1e-06   25.6  21.5    7.5e-06   25.4  20.5    1.7  1  UAA             UAA transporter family
  ------ inclusion threshold ------
      0.077   12.3  22.0       0.21   10.9   0.6    2.1  2  TPT             Triose-phosphate Transporter family
        0.9   10.2   8.6        6.1    7.6   3.5    3.1  2  Multi_Drug_Res  Small Multidrug Resistance protein


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1  14.8   6.3e-08   0.00028       8     135 ..      29     159 ..      23     161 .. 0.86
   2 !   31.5   5.6   3.7e-11   1.7e-07       2     134 ..     210     348 ..     209     351 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 6.3e-08
        EamA   8 llaalfwaiyfvlskillrkvspltltf....vrfliagillliiallkegklaklslkdwllllllgllgtvlafllffyalkktsasnaslitsleP 102
                 +l+ + ++i  +++ +++ +++ + ++f    v+++++++ l+i+  ++  +++ l++kd l  l ++ +  v++ +   ++l+ +++ + +++ +l+ 
  CCD23642.1  29 ILSYCASSILMTMTNKFVVNLPNFNMNFimllVQSFVCTLTLIILKKFNITNFRPLNKKDTLNWLPIS-FLLVIMIFTSSKSLQFLPVPIYTIFKNLTI 126
                 56667777888888888888888888873334666699999999999999999999999999999999.677888899********************* PP

        EamA 103 vftlilsvlllgekltlkqllgivlillGvlli 135
                 ++++   vl++g k+tl++l +++l++l+ ++ 
  CCD23642.1 127 ILIAYGEVLFFGGKVTLWELSSFILMVLSSIVA 159
                 ****************************98876 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 3.7e-11
        EamA   2 lgillallaalfwaiyfvlskil..lrkvspltltfvrfliagillliiallkegkl...aklslkd.wllllllgllgtvlafllffyalkktsasna 94 
                  g+l++++ ++++a+  +++++    +k+  + + f+  ++a  +lli++ + e +     kl+l++   + ++++ l++v   ++  + ++ ts+++ 
  CCD23642.1 210 PGYLWMFINCISSALFVLIMRKKikQTKFKDYDTMFYNNILALPILLIFSYIVEDWShdnLKLNLNNdSVIPMIISGLASVGISYCSGWCVRVTSSTTY 308
                 69******************6662355667889****************98888877788455544435555777777777778899************ PP

        EamA  95 slitslePvftlilsvlllgekltlkqllgivlillGvll 134
                 s++ +l  + +++++ l++  + +++++++i+l++l+ ll
  CCD23642.1 309 SMVGALNKLPIALFGLLFFDAPRNFLSIFSIFLGFLSGLL 348
                 ***********************************98665 PP

>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4  20.5   1.7e-09   7.5e-06      23     298 ..      46     349 ..      27     353 .. 0.70

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 1.7e-09
         UAA  23 ivkeepkafgnlltfvq.....flfvalegllesid..ilkkrkiPlktYvilvalffitsvlnnealkydisvPvhiifrssklipvmilGililgkr 114
                 +v+  + +++ ++ +vq     + +++l ++ +  +  ++  +k    +++ +++l +i+  ++ ++l++ ++vP+ +if+   +i      +l+ g +
  CCD23642.1  46 VVNLPNFNMNFIMLLVQsfvctLTLIILKKF-N--ItnFRPLNKKDTLNWLPISFLLVIMIFTSSKSLQF-LPVPIYTIFKNLTIILIAYGEVLFFGGK 140
                 4555556655555566654332222223333.2..13457778888899*********************.*************999999999****** PP

         UAA 115 YsllqylsvllltlGviiftllsakdk..............................kedskeslnkfll.....Giallvlallldavlglvqeklyk 178
                  +l++ +s +l++l  i++t+ +++                                +     + + +++     G++ ++++ + +a+  l+  k  k
  CCD23642.1 141 VTLWELSSFILMVLSSIVATMGDNQALkqatalsianstaqlnhqgnkkttteeielS-----NITIWTTimgnpGYLWMFINCISSALFVLIMRKKIK 234
                 *********************88877799******************98876442221.....2222221345559*********************** PP

         UAA 179 kygkhskealfyshllslplflllqgellsavkflsesedvallslpsklfylllnvltqyvcikgVl.ilisefgaltvtlvltlRKfvslllSillF 276
                 + + +  +++fy+++l+lp++l+++  + +  ++ ++ +           +  ++ + ++ v+i++     ++ +++ t ++v  l K+   l+ +l+F
  CCD23642.1 235 QTKFKDYDTMFYNNILALPILLIFSYIVEDWSHDNLKLNLNN------DSVIPMIISGLASVGISYCSgWCVRVTSSTTYSMVGALNKLPIALFGLLFF 327
                 *********************987665544434333333333......233333333333444444431234455566666666666666666666666 PP

         UAA 277 knpltlqhlvgtllVflgllly 298
                 + p  +  +++  l fl+ lly
  CCD23642.1 328 DAPRNFLSIFSIFLGFLSGLLY 349
                 6666666666666666666666 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  15.5    0.0024        11      12     186 ..      34     207 ..      26     217 .. 0.85
   2 ?   10.9   0.6   4.7e-05      0.21     165     289 ..     231     349 ..     214     350 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0024
         TPT  12 llnvvfnilnKkilnvf..pyPltvsavqllvgsvlilvlwalglkkrpkisseflkailplalvktlghvlavvslskvaVSfthtvKasePiFtvil 108
                 + ++++ ++nK + n+   ++ +++ +vq +v ++ +++l ++++++   ++++ + + lp++++ ++  +++  sl+  +V    + K +  i  +  
  CCD23642.1  34 ASSILMTMTNKFVVNLPnfNMNFIMLLVQSFVCTLTLIILKKFNITNFRPLNKKDTLNWLPISFLLVIMIFTSSKSLQFLPVPIYTIFKNLTIILIAYG 132
                 4678899******998722555567789999999999999999******************************************************** PP

         TPT 109 srlllgeklsllvylsLlpivgGvalasvtElsFnligfisAlisnltfslrnifsKkllkklkdldalnlfaiitil 186
                   l++g k++l+ + s + +v   ++a++ + + +l   ++  i+n t++l    +Kk+ +++  ++ +n+   +ti+
  CCD23642.1 133 EVLFFGGKVTLWELSSFILMVLSSIVATMGDNQ-ALKQATALSIANSTAQLNHQGNKKTTTEE--IELSNITIWTTIM 207
                 *****************************9865.4555556668999999999999*999995..4444444444444 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 4.7e-05
         TPT 165 KkllkklkdldalnlfaiitilslllllPvallvegvlktpsllkstkvs.lkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvl 262
                 Kk+ ++ k ++  + +++      +l lP++l++  +++  s+ + +  + +++ ++ +++sg+     + ++  ++  +s  t+s+  ++ +  +  +
  CCD23642.1 231 KKIKQT-K-FKDYDTMFYNN----ILALPILLIFSYIVEDWSHDNLK-LNlNNDSVIPMIISGLASVGISYCSGWCVRVTSSTTYSMVGALNKLPIALF 322
                 332222.2.44444444444....55566666666544444444444.333799999****************************************** PP

         TPT 263 svlvfknpvsllnaiGtavaivGvflY 289
                  +l+f  p ++l+++   ++ +  +lY
  CCD23642.1 323 GLLFFDAPRNFLSIFSIFLGFLSGLLY 349
                 *******99999998888887777777 PP

>> Multi_Drug_Res  Small Multidrug Resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.5    0.0014       6.1      26      92 ..      88     151 ..      54     154 .. 0.67
   2 ?    4.0   0.1     0.017        77      53      92 ..     302     341 ..     265     341 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0014
                     --------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH CS
  Multi_Drug_Res  26 ftkltpsllvivgygisfllLskalkslpvsvAYavwsGiGtvlivlvgillfgeslslkkliglal 92 
                     +t +++ + ++  ++i ++  sk+l+ lpv + Y++++ + ++li+  ++l+fg ++ l++l + +l
      CCD23642.1  88 DTLNWLPISFL--LVIMIFTSSKSLQFLPVPI-YTIFKNLTIILIAYGEVLFFGGKVTLWELSSFIL 151
                     33333333333..2333445589999***987.************************9998876554 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.017
                     -----HHHHHHHHHHHHHHHHHHHHH--------HHHHHH CS
  Multi_Drug_Res  53 lpvsvAYavwsGiGtvlivlvgillfgeslslkkliglal 92 
                     +  s+ Y +  ++  + i+l+g+l+f+ + +   ++++ l
      CCD23642.1 302 VTSSTTYSMVGALNKLPIALFGLLFFDAPRNFLSIFSIFL 341
                     56688999999999999**************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1187  (0.0662056); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2679.11
//
Query:       CCD23643.1  [L=1040]
Description: hypothetical protein NDAI_0B06110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-17   60.7   5.4    1.9e-16   59.4   5.4    1.8  1  GATA            GATA zinc finger
  ------ inclusion threshold ------
       0.14   11.7   0.9       0.37   10.3   0.9    1.8  1  TF_Zn_Ribbon    TFIIB zinc-binding


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   5.4   2.1e-20   1.9e-16       1      36 []     377     411 ..     377     411 .. 0.98

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 2.1e-20
        GATA   1 CsnCgttkTplWRrgpdgnksLCnaCGlyykkkglk 36 
                 C nC+ttkTplWRr+p+gn+ LCnaCGl++k++g++
  CCD23643.1 377 CFNCKTTKTPLWRRDPQGNT-LCNACGLFQKLHGTM 411
                 ********************.*************96 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.9   4.2e-05      0.37       2      27 ..     376     403 ..     375     404 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.2e-05
                   EETTTTCEEC..HEETSTTCEEESSSSB CS
  TF_Zn_Ribbon   2 kCPnCgstnl..veDpergelvCtdCGl 27 
                   +C nC++t++   +   +g+++C +CGl
    CCD23643.1 376 ICFNCKTTKTplWRRDPQGNTLCNACGL 403
                   699****76554666788*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1040 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4906  (0.273635); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                       212  (0.0118244); expected 17.9 (0.001)
Passed Fwd filter:                        73  (0.00407162); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.37u 0.45s 00:00:02.82 Elapsed: 00:00:00.72
# Mc/sec: 4363.12
//
Query:       CCD23644.1  [L=255]
Description: hypothetical protein NDAI_0B06120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.042   13.3   0.0      0.066   12.7   0.0    1.3  1  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   3.7e-06     0.066      29      80 ..     169     219 ..     154     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.7e-06
  Glyco_transf_21  29 akydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsdakglaaale 80 
                       ++++l ++D  ++++  +L++l +++ d + gl  ++p++++  +l+  + 
       CCD23644.1 169 CRNNYLPFLDPGIALRDGTLHQLFNSMHD-NSGLGFAPPICVNDGTLYELFN 219
                      5789999*********************9.9***************998774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1755.68
//
Query:       CCD23645.1  [L=774]
Description: hypothetical protein NDAI_0B06130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-24   85.6   0.1    9.3e-24   83.6   0.0    2.2  2  XPG_I     XPG I-region
    1.2e-05   25.8   0.0    3.8e-05   24.1   0.0    1.9  1  XPG_N     XPG N-terminal domain
  ------ inclusion threshold ------
      0.057   12.9   0.0       0.14   11.6   0.0    1.7  2  XPG_I_2   XPG domain containing


Domain annotation for each model (and alignments):
>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   1.6e-27   9.3e-24       2      94 .]     171     277 ..     170     277 .. 0.92
   2 ?   -3.8   0.1         3   1.8e+04      49      70 ..     455     474 ..     453     479 .. 0.64

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 1.6e-27
                 HHT--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT...............EEECEEEEEEHHHHHHHHT..--HHHHH CS
       XPG_I   2 lmgipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkk.............kekekkkvevidlekvlkelg..ltreqli 85 
                  m+i+y++A+gE+EAqca+Lq +g+vd+v+++DsD+++FG++kv++n+s k+ ++              ++ +++ ++vidl++v+++++  +++ +l+
  CCD23645.1 171 FMNISYIDACGEGEAQCAWLQVHGYVDFVWTNDSDIFIFGGTKVIKNYS-KFVNDIgmtaspkkvssplRKAKEYFITVIDLNEVIRKTNgkINQWSLL 268
                 69**********************************************8.55555578899********99999************9977679****** PP

                 HHHHHHCET CS
       XPG_I  86 dlaillgcD 94 
                  +++llg D
  CCD23645.1 269 FFSVLLGAD 277
                 *******98 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3
                 TT.ECECTT..EEECEEEEEEH CS
       XPG_I  49 lskkkskkkkekekkkvevidl 70 
                 ++  + ++++e+e++k++++++
  CCD23645.1 455 MT--TGNDENEYENSKIKCYKV 474
                 55..334445688888998887 PP

>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   6.3e-09   3.8e-05       1      88 [.       1     102 [.       1     112 [. 0.73

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 6.3e-09
                 X--TTHHHHHHHH-GEEEEEGGGGTT.........EEEEEEHHHHHHH..HHHHSE.ETTEE-BS..-HHHHHHHHHHHHHHHTTEEEEEEE--S--.G CS
       XPG_N   1 MGikgLlkllkevaairsvsiealeg.........kklaiDaslwlyr..fliavreqlgnalen..tshlmglfsrllrlldfgikPifVFdgkap.d 85 
                 MG+  L+++lk+    +++s++++           +k+aiD++ wl    f++++ +  + + ++   + +  l+ rl+ ll +++  i+VFdg    +
  CCD23645.1   1 MGVPQLWEILKPYTEANRISLRQFISnfekengrsPKVAIDGYNWLFEcgFIVSPTNSIKYSTQGttPKAMLNLLVRLKELLSLNVGFILVFDGAMKpS 99 
                 9***********996666666655332333666778**********983356665555444444453566777899******************86436 PP

                 GGH CS
       XPG_N  86 lkk 88 
                 +k+
  CCD23645.1 100 FKN 102
                 665 PP

>> XPG_I_2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.4e-05      0.14      27     112 ..     180     274 ..     160     332 .. 0.71
   2 ?   -3.7   0.0       1.1   6.8e+03     189     213 ..     534     558 ..     511     569 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
     XPG_I_2  27 pgEADkfcAvlA.rklgcaVLTsDSDLlvhdlgeegsv....ifldsielssrvkkaepk..sklsiratkyrpaeiakklgvp....slqllAfel 112
                  gE  ++cA l  + + ++V T+DSD++++    +  +     f+++i ++ + kk +++  +  +  +t + ++e+++k + +    sl  +  +l
  CCD23645.1 180 CGEGEAQCAWLQvHGYVDFVWTNDSDIFIFGG--TKVIknysKFVNDIGMTASPKKVSSPlrKAKEYFITVIDLNEVIRKTNGKinqwSLLFFSVLL 274
                 5788899**8766*****************43..333211126889999888545555555644555566667777777766665555666665555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.1
     XPG_I_2 189 pevYlpflvedhsrrcaWeegkdiR 213
                 + ++++ ++e++ r+++   +++ R
  CCD23645.1 534 VVEFIHKEQEEEKRKVQAPTSRRRR 558
                 3456666666666666544555545 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (774 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.48
# Mc/sec: 4861.84
//
Query:       CCD23646.1  [L=184]
Description: hypothetical protein NDAI_0B06140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-51  174.1   0.3    2.6e-51  173.8   0.3    1.0  1  PMSR      Peptide methionine sulfoxide reductase
  ------ inclusion threshold ------
      0.012   15.5   0.4        1.2    9.2   0.1    2.4  2  DUF3889   Protein of unknown function (DUF3889)


Domain annotation for each model (and alignments):
>> PMSR  Peptide methionine sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   0.3   2.9e-55   2.6e-51       2     152 ..      19     175 ..      18     176 .. 0.96

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 2.9e-55
                 EEEE-S-HHHHHHHHCTSTT..EEEEEEEEESS......S-SS--HHHHHTTTT--EEEEEEEEETTTS-HHHHHHHHHHTS-TT-SSEETTEESGGG- CS
        PMSR   2 avlagGCFWgveklfeklkG..vlstevGYagG......ktenptYeevcsgktghaEavevvydpekvsleellelffeihDptqlnrqgnDvGtqYr 92 
                 +++a GCFWg++++++k+ G  +++++vGYa+G      ++++++Y++v++g+t++aEa+++ y+p++++l+el+++ff+ihDpt++n qg D+GtqYr
  CCD23646.1  19 ITVACGCFWGTDHIYKKHLGdkIIDAKVGYANGdeskndQVDSVSYKRVKQGDTNFAEALQIAYNPNTIKLKELVDFFFRIHDPTTVNFQGPDQGTQYR 117
                 799***************9777***********76666556699******************************************************* PP

                 -EEEESSCCHHHHHHHHHHHHHTTHTTSSS---EEEEG-SEEE--CCCTTHHHH-TTS-- CS
        PMSR  93 saiyytneeqkevaeevleelqkkkalkkkivteieplkefykaeeyHqqYleknpegyc 152
                 s+++++++e+ ++ e +++e+q k  +++kivt++ep+++fy+aeeyHq Yl+knpegy 
  CCD23646.1 118 SGLFAHSDEDLKELELLKKEWQPK--WGNKIVTQVEPIHNFYDAEEYHQLYLTKNPEGYA 175
                 ************************..********************************97 PP

>> DUF3889  Protein of unknown function (DUF3889)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0    0.0049        44      76      90 ..       8      22 ..       2      24 .. 0.85
   2 ?    9.2   0.1   0.00013       1.2      47      88 ..      50      91 ..      29      95 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0049
                EEEE-TTT--EEEEE CS
     DUF3889 76 eisfepktekiikis 90
                +i+++pkt+k+i ++
  CCD23646.1  8 TIKYNPKTDKLITVA 22
                8**********9986 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00013
                EEEEE-SS-.EEEEEEEEEEETTEEEEEEEEEEE-TTT--EEE CS
     DUF3889 47 vGrtkkede.tkekFkltlkegnkefgvlveisfepktekiik 88
                 G++ k+d+     +k  +k+g+ +f+   +i ++p+t k+++
  CCD23646.1 50 NGDESKNDQvDSVSYK-RVKQGDTNFAEALQIAYNPNTIKLKE 91
                5889999994444555.89*******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1313.38
//
Query:       CCD23647.1  [L=449]
Description: hypothetical protein NDAI_0B06150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.7e-129  431.3   0.0    8.5e-75  251.7   0.3    2.0  2  AdoHcyase       S-adenosyl-L-homocysteine hydrolase
      2e-85  284.8   2.9    3.2e-85  284.1   2.9    1.3  1  AdoHcyase_NAD   S-adenosyl-L-homocysteine hydrolase, NAD bind
    3.3e-08   33.1   0.1    6.2e-08   32.2   0.1    1.4  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
    0.00035   20.2   0.2    0.00067   19.3   0.2    1.4  1  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
     0.0016   18.7   0.1     0.0033   17.7   0.1    1.5  1  TrkA_N          TrkA-N domain
     0.0058   15.4   0.5       0.37    9.5   0.1    2.8  3  Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
  ------ inclusion threshold ------
       0.17   11.6   0.0       0.27   11.0   0.0    1.2  1  DUF2572         Protein of unknown function (DUF2572)


Domain annotation for each model (and alignments):
>> AdoHcyase  S-adenosyl-L-homocysteine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.7   0.3   3.3e-78   8.5e-75       1     138 [.       7     144 ..       7     146 .. 0.99
   2 !  178.8   0.0   5.2e-56   1.3e-52     171     299 .]     144     448 ..     143     448 .. 0.97

  Alignments for each domain:
  == domain 1  score: 251.7 bits;  conditional E-value: 3.3e-78
                 --B-S-GGGHHHHHHHHHHHHCC-HHHHHHHHHCTTT-TTTT-EEEEES--SHHHHHHHHHHHHTT-EEEEE-SSTTT--HHHHHHHCCTTEEEE--TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase   1 dykvkdislaefGrkeielaekempglmalreeyaeekplkgariaGslhmtiqtavLietLvalGaevrWasCnifstqdeaaaaiaeagvpvfawkg 99 
                 +ykv+disla+fGrkeielae+empglma+r+ ya+ +plkgariaG+lhmtiqtavLietLvalGaev+W+sCni+stqd+aaaaia++gvpvfawkg
  CCD23647.1   7 NYKVADISLAAFGRKEIELAEHEMPGLMAIRKAYASVQPLKGARIAGCLHMTIQTAVLIETLVALGAEVTWSSCNIYSTQDHAAAAIAASGVPVFAWKG 105
                 69************************************************************************************************* PP

                 --HHHHHHHHHHCHS-SSTS-S-SEEEESSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 100 etleeywwcieqalkwaedekepnlilDdGGDltllvhk 138
                 et+eey wcieq+l   +d+k+ nlilDdGGDlt lvh+
  CCD23647.1 106 ETEEEYLWCIEQQLFAFKDGKKLNLILDDGGDLTSLVHD 144
                 ***************99********************97 PP

  == domain 2  score: 178.8 bits;  conditional E-value: 5.2e-56
                 THHCCCHCC--EEEE-SHHHHHHHHHHHHTT---SEEEESTTSHHHCTTH................................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................. RF
   AdoHcyase 171 kkytellkkikGvseetttGvhrLyelakkgkLlvpainvndsvtkskfD................................................. 220
                 +k++e+l+++ G+seetttGvh Ly+++k+++L+vpainvndsvtkskfD                                                 
  CCD23647.1 144 DKHPEMLNDCFGLSEETTTGVHYLYKMVKENRLKVPAINVNDSVTKSKFDnlygcreslidgikratdvmlagkvavvagygdvgkgcaaalrgmgarv 242
                 57999********************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
   AdoHcyase 221 ................................................................................................... 220
                                                                                                                    
  CCD23647.1 243 ivteidpinalqaamegyqvatmdeassigqvfvtttgcrdiingnhfanmpedaivcnighfdieidvawlkanakecinikpqvdrylldngrhiil 341
                 *************************************************************************************************** PP

                 ..............S-HHHHHHHHHHHHHHHHHHHHT.TSSS-SS.............EEE--CHHHHHHHHHCCCCCT-------HHHHHCCTSXTTS CS
                 ..............xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   AdoHcyase 221 ..............hpsfvmsasftnqvlaqielfkk.ekkyekk.............vyvlpkklDekvarlhleklgaklteltkeqaeyigveveG 291
                               h+sfvms+sf+nqvlaqi lf+  +k+ ++k             v+vlpk lDe va+ hleklg++lt+lt+ q+ey++v  eG
  CCD23647.1 342 langrlvnlgcatgHSSFVMSCSFSNQVLAQIALFRAgDKAFREKhvefqktgpftvgVHVLPKILDEAVAKFHLEKLGVHLTTLTEAQSEYLSVAPEG 440
                 ************************************64333333357777899***99***************************************** PP

                 XXSXTTXX CS
                 xxxxxxxx RF
   AdoHcyase 292 PfkpdhYr 299
                 P+k+dhYr
  CCD23647.1 441 PYKADHYR 448
                 *******9 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.1   2.9   1.3e-88   3.2e-85       1     162 []     194     355 ..     194     355 .. 1.00

  Alignments for each domain:
  == domain 1  score: 284.1 bits;  conditional E-value: 1.3e-88
                    HHHHHCCCCCHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE-SSSSSSB-HHH CS
  AdoHcyase_NAD   1 nlygcreslvdgikratdvllaGkvavvaGyGdvGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvtttGnkdiitleh 96 
                    nlygcresl+dgikratdv+laGkvavvaGyGdvGkGcaa+l+g+Garvivte+dPi+alqaameG++v+t++e+ + ++++vtttG++dii+ +h
     CCD23647.1 194 NLYGCRESLIDGIKRATDVMLAGKVAVVAGYGDVGKGCAAALRGMGARVIVTEIDPINALQAAMEGYQVATMDEASSIGQVFVTTTGCRDIINGNH 289
                    89********************************************************************************************** PP

                    HCCS-TTEEEEE-SSTTTTBTHHHHHTTT-EEEEEETTEEEEE-TTS-EEEEEGGGSBCHHHTS-- CS
  AdoHcyase_NAD  97 lkkmkddaivcniGhfdseidvaaleanalkkeevkpqvdrvtlkdgkkiillaeGrllnlgcatg 162
                    +++m +daivcniGhfd eidva+l+ana++++++kpqvdr+ l++g++iilla+Grl+nlgcatg
     CCD23647.1 290 FANMPEDAIVCNIGHFDIEIDVAWLKANAKECINIKPQVDRYLLDNGRHIILLANGRLVNLGCATG 355
                    ****************************************************************97 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.1   2.4e-11   6.2e-08      33     128 ..     213     304 ..     197     319 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 2.4e-11
                   -GTTSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS- CS
  2-Hacid_dh_C  33 elsgktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpetrhlinaeelakmkkgailiNtaR 128
                    l+gk   + G+G++G+  a  l+++g++vi+++  + +  +++ +g+++++++e+ +  ++ +     t   r++in +++a m+++ai+ N++ 
    CCD23647.1 213 MLAGKVAVVAGYGDVGKGCAAALRGMGARVIVTEIDPINALQAAMEGYQVATMDEASSIGQVFVT----TTGCRDIINGNHFANMPEDAIVCNIGH 304
                   6899********************************99888899999999999988777666665....66799*******************985 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   2.6e-07   0.00067       2      64 ..     214     275 ..     213     302 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.6e-07
                 HHTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEE CS
        IlvN   2 lkgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvv 64 
                 l gk  +v GyG  G+  a  lr  g  v+v+  +   ++ +A  eg++v+t++ea++  +v 
  CCD23647.1 214 LAGKVAVVAGYGDVGKGCAAALRGMGARVIVTEIDPI-NALQAAMEGYQVATMDEASSIGQVF 275
                 667777888**********************998888.66677789**********9888775 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   1.3e-06    0.0033       2      48 ..     220     266 ..     219     271 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.3e-06
                 EEES-SHHHHHHHHHHHH.TTEEEEEEESSHHHHHHHHHTTSEEEES- CS
      TrkA_N   2 iiiGlGrvGrslaeeLse.ggkdvvvidkdeerveelreeglevvvgd 48 
                 +++G+G+vG+  a  L+  g  +v+v + d+ ++ +++ eg++v   d
  CCD23647.1 220 VVAGYGDVGKGCAAALRGmGA-RVIVTEIDPINALQAAMEGYQVATMD 266
                 8*****************666.6*******************998766 PP

>> Oxidored_nitro  Nitrogenase component 1 type Oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.098   2.5e+02     269     313 ..      45     100 ..      15     185 .. 0.66
   2 !    9.5   0.1   0.00015      0.37     256     303 ..     199     247 ..     187     279 .. 0.87
   3 ?    2.2   0.0     0.024        61      62      89 ..     403     430 ..     397     434 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.098
                     HHTT-EEEEECSS.HHHHHHHHHHHHHT-EEEEEEESSS-HHHHH..........H CS
  Oxidored_nitro 269 ylagkrvaiygdp.drvvalarllkelGmevvaagtetahrddee..........r 313
                      l+g+r+a +     +   l++ l  lG+ev + ++   + +d++           
      CCD23647.1  45 PLKGARIAGCLHMtIQTAVLIETLVALGAEVTWSSCNIYSTQDHAaaaiaasgvpV 100
                     56666665444441333445677777999999999999999999523333333330 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00015
                     HHHHHHHHHH.HHHHHTT-EEEEECSSHHHHHHHHHHHHHT-EEEEEEE CS
  Oxidored_nitro 256 rarlldalad.yheylagkrvaiygdpdrvvalarllkelGmevvaagt 303
                     r+ l+d ++  +  +lagk ++++g++d   + a++l+ +G++v+++ +
      CCD23647.1 199 RESLIDGIKRaTDVMLAGKVAVVAGYGDVGKGCAAALRGMGARVIVTEI 247
                     677889999878899*****************************98765 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.024
                     HHHHHHHHHHHC-TSEEEEEE-HHHHHT CS
  Oxidored_nitro  62 LkeaikeivkrykpkaIgVittClteli 89 
                     L + ++e+v++++ +  gV+ t lte  
      CCD23647.1 403 LPKILDEAVAKFHLEKLGVHLTTLTEAQ 430
                     7899********************9975 PP

>> DUF2572  Protein of unknown function (DUF2572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.27      81     146 ..     105     173 ..      80     185 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
     DUF2572  81 sdgishfiwCerkslfkkkPkkaln.....egklsefineeklelfreklssppkeearekkpklywldek 146
                  ++ ++++wC  ++lf+ k  k+ln      g l +++++++ e++++ +  +  ee++   ++ly++ ++
  CCD23647.1 105 GETEEEYLWCIEQQLFAFKDGKKLNlilddGGDLTSLVHDKHPEMLNDCFGLS--EETTTGVHYLYKMVKE 173
                 567899************999999844433589*****************996..7888889999998743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3181.01
//
Query:       CCD23648.1  [L=1403]
Description: hypothetical protein NDAI_0B06160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-33  116.9   0.1    2.1e-33  116.0   0.1    1.4  1  RVT_2            Reverse transcriptase (RNA-dependent DNA pol
    8.5e-16   58.2   0.0    2.4e-15   56.8   0.0    1.8  1  rve              Integrase core domain
    9.9e-06   25.3   0.4    4.1e-05   23.4   0.4    2.1  1  gag_pre-integrs  GAG-pre-integrase domain
     0.0012   18.4   0.4      0.037   13.6   0.4    2.4  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
  ------ inclusion threshold ------
      0.091   12.6   0.0       0.34   10.7   0.0    2.0  1  rve_3            Integrase core domain
       0.16   12.1   2.3       0.29   11.3   2.3    1.5  1  zf-CCHC          Zinc knuckle


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   0.1     7e-37   2.1e-33      11     196 ..     928    1103 ..     923    1159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 116.0 bits;  conditional E-value: 7e-37
       RVT_2   11 drkaigsrWvftkkkddlkevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkqPpGfeidr 107 
                   +k i + ++ft+k+    ++k k+r+va+G +qk+g   ++  +  ++  ++   la+a  ++  + qld++sa+L a l+ee+y++ Pp +++  
  CCD23648.1  928 SNKVINTMFIFTTKR----NGKKKCRCVARGDQQKPGTFNEDATSSTVHHYALMTCLAIALDKGQYITQLDISSAYLYAALEEELYIRTPPHMKMK- 1019
                  568999********5....9*****************98887666666666677789**********************************99988. PP

       RVT_2  108 eeekvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfklkdl 196 
                    +kv++LnkslyGlkq++  W+++i ++L +   +  +  +G  +  ++++++ v l+vdd+++ ++d    +++  +l++kf+ k +
  CCD23648.1 1020 --GKVMRLNKSLYGLKQSGANWYNTIREFLLDN--CDLTEVTGWPCV-FTNNNVTVCLFVDDMVVFSKDLADADKLVDTLQSKFDTKVV 1103
                  ..9**************************9774..566666676654.58899*******************************99865 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   0.0   8.1e-19   2.4e-15       3     117 ..     374     491 ..     372     493 .. 0.90

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 8.1e-19
         rve   3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggve...pervlsDngseytskafrefladlgirvsft 97 
                 +p e++++D++  v+  d  + +y++ ++d  +r+ ++++l+++ da+++l + ++ v + +++    ++++++D+gseyt+k +r++ +d gi + +t
  CCD23648.1 374 EPFEYIHTDLFgPVSGVDITSPKYFISFTDENTRFRWVFPLKKK-DADHILPIFQQLVNYIKNQFkvrVLTFHMDRGSEYTNKLVRDYFKDKGILPIYT 471
                 799********9888788888***********************.99888777777776666655666******************************* PP

         rve  98 rpgrpqdnGkvErfhrtlkd 117
                  +g++ +nG++Er++ t+ +
  CCD23648.1 472 TVGDSSSNGIAERANLTFLN 491
                 **************998765 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.4   1.4e-08   4.1e-05      11      66 ..     293     355 ..     282     356 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.4e-08
  gag_pre-integrs  11 anssvslsknkssinlWHrRLGHpsfsrlkkLfkkgllpglkisk.......sevCeaCqlgK 66 
                      ++s+v++ ++k ++ l Hr +GH++++ ++k ++++l+ ++ i++       +++C+ C  gK
       CCD23648.1 293 HKSQVHALSKKFPLTLVHRLFGHINVKDIRKSIESKLITNIRINDvdwsgidKFQCKDCLAGK 355
                      344556667999*****************************99776666666889*******9 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.4   1.2e-05     0.037      64     191 ..     983    1098 ..     955    1104 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
                  CHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET.........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T..... CS
       RVT_1   64 kkkkaklllklDlkkaFdsvpleellrkltafkvptklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkra.. 158 
                  +  k +++++lD+++a+    lee+l+  t   ++                   +    +++    +    G++ S + +  ++ e+l +    +  
  CCD23648.1  983 ALDKGQYITQLDISSAYLYAALEEELYIRTPPHMK-------------------M----KGKVMRLNKSLYGLKQSGANWYNTIREFLLDNCDLTev 1056
                  55666777777777777777777776655552222...................1....14444444444677777776666666655544443457 PP

                  ............TEEECTTEEEEEESSHHHHHHHHHHHHHHH CS
       RVT_1  159 .........kgvtllrYaDDililskskeelqelleaveewl 191 
                           ++vt+++++DD++++sk+  ++++l++++++++
  CCD23648.1 1057 tgwpcvftnNNVTVCLFVDDMVVFSKDLADADKLVDTLQSKF 1098
                  78888888899************************9999865 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00011      0.34       2      32 ..     465     495 ..     464     505 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdelln 32 
                 gi + y+ +g+   Ng +E+ n t+ + + +
  CCD23648.1 465 GILPIYTTVGDSSSNGIAERANLTFLNDCRT 495
                 777899*********************9986 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.3   9.8e-05      0.29       2      18 .]     100     116 ..      99     116 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 9.8e-05
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 +C  C + GH a+ Cp+
  CCD23648.1 100 TCEFCDKRGHTAKKCPQ 116
                 8***************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 9677.11
//
Query:       CCD23649.1  [L=593]
Description: hypothetical protein NDAI_0B06180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.098   12.8   2.5          8    6.6   0.1    2.8  2  YceD      Large ribosomal RNA subunit accumulation protein Yc


Domain annotation for each model (and alignments):
>> YceD  Large ribosomal RNA subunit accumulation protein YceD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.4    0.0013        23      24      78 ..     198     281 ..     195     311 .. 0.74
   2 ?    6.6   0.1   0.00045         8      11      59 ..     502     552 ..     496     581 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0013
        YceD  24 ldveftelfveeeeeaedeedee.............................deedeeeilaeedeiDlselireelllalPlk 78 
                 +d++++  f ++eee+ed +de+                               + + +++ +++++Dl+++ + +++l+  ++
  CCD23649.1 198 IDLTTKTNFEYNEEEDEDVDDEDidhllpvkdsiiindneviipsnrlsprqLYDYKKDLMNKKNTLDLDDIKERQIALENEFN 281
                 678888999999999999988877777777777776666666666666666666666666667777888777777777776555 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00045
        YceD  11 leCdrClepvelpldveftelfveeeeeaedeedee..deedeeeilaeed 59 
                 + C+ +l+ ++++ dvef+e   +e+ee  +e++e+   +e+ ++i+ ++d
  CCD23649.1 502 QMCNGTLQRLRYSADVEFSERENREREESFKEFKEKvvTNENLLNIVDNHD 552
                 67*******************888777777777666664444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1228  (0.0684924); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4719.52
//
Query:       CCD23650.1  [L=947]
Description: hypothetical protein NDAI_0B06190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-161  538.0  17.7   2.2e-161  538.0  17.7    2.7  3  SAPS      SIT4 phosphatase-associated protein


Domain annotation for each model (and alignments):
>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.6   8.6         1   1.8e+04     284     324 ..     198     225 ..      43     261 .. 0.51
   2 !  538.0  17.7  1.2e-165  2.2e-161       2     488 ..     303     816 ..     302     817 .. 0.91
   3 ?   -4.1   3.1      0.27   4.9e+03     275     319 ..     867     925 ..     840     945 .. 0.41

  Alignments for each domain:
  == domain 1  score: -7.6 bits;  conditional E-value: 1
        SAPS 284 edltdkdedvsleesksakdenkesdesesdtaeesseede 324
                 e+++d+ ++ s+ +s++ ++             e++++++ 
  CCD23650.1 198 EKIQDTPANNSSTKSETIDA-------------ETAVDSNP 225
                 11111111111111111111.............11111111 PP

  == domain 2  score: 538.0 bits;  conditional E-value: 1.2e-165
        SAPS   2 enLldrkteemleFiksqenivekflkhidtpaimdlLlkiIstektesgtgiiewlksqdLisklldlLs.peesediqssasdfLkaiItisanata 99 
                 +nLl +kte+++eFik+++++v+++++h+d+p +md++lkiI +++ +s+tgii+++++q Li k+l+ L+ +++s+d+q++++dfLka+I isana+ 
  CCD23650.1 303 QNLLFTKTEQYIEFIKNNPKLVDEMVAHVDIPILMDFFLKIIAVDRIDSPTGIIQLVSNQGLIMKCLQYLNnEKYSSDTQACVGDFLKALIGISANAPI 401
                 79********************************************************************97889***********************9 PP

        SAPS 100 nlqssigpneLtreLvseeivekLikimlkgksgsalvngvgiiielirknnsdydeenllytsleedppsmrdpiylghlLrlfsehlkdfqqlllep 198
                 + + sigpn+LtreL+ + +++kLi++++++ +g+al ++v+i+ielirknnsdyd++nll+t++e++ p++rdpiylg+lL+ fsehl++f q+++++
  CCD23650.1 402 D-DISIGPNSLTRELAAPCSIDKLINVIINE-KGYALDTAVSIVIELIRKNNSDYDQVNLLETTIEDNIPTDRDPIYLGYLLKKFSEHLPNFLQIIEND 498
                 9.9***************************8.9****************************************************************** PP

        SAPS 199 keksklettlgekiepLGfeRfkiveLiaeLLhcsnmallnekkgeeivkerDevrerlleeltseeealedvsdeaskeesaesedlt.....dkded 292
                 ++    +++l+e+ +pLGfeRfkiveLiaeLLhcsnm+l+n+k++e i ++r+  ++   +++++++ a+++++ +++++++++++ ++     +++++
  CCD23650.1 499 NDLPMYTNQLNESYKPLGFERFKIVELIAELLHCSNMGLMNSKRAEIITYKRNLYLQSTNDKKHELNGAFNELTLNDNNNNEPAKKIMKndtkfNANDS 597
                 999999******************************************************999999888888884444444444333330000033334 PP

        SAPS 293 vsleesksakdenkesdesesdtaeesseededdasseesalaeeteeklrkkpvvGDlLKiklvelkilptiLdlFfkYpwNNfLHnvVydivqqiln 391
                 +++++++++++++++++ +++++    ++ +e d+s+e +++  +++eklrk+p++GDl+Ki+l++++il +i++lF+++pwNNf+Hnv++di+qq +n
  CCD23650.1 598 INNHNNNEKEETSTNEHINTNQNIFAIDDVEEVDESFEIPYVGINQNEKLRKNPTIGDLFKINLYDNQILTKIMKLFLDHPWNNFWHNVIFDILQQLFN 696
                 4444444444444444445555555566778999***************************************************************** PP

        SAPS 392 gkmdrgynrfLavdLf.......................ekaklterilegqkesdesqaekkirlGYmGHltlIAeevvkfleryppellseeieekl 467
                 g+md++yn+fL+++Lf                       + + + ++il+g++es  + ++ k++lGYmGHl+l+Aee+vkf+ +y++el+s++i+e+l
  CCD23650.1 697 GRMDFSYNSFLIYSLFsskgsieympmeyqefkvkeikdDFKITRDFILKGYHESFTFFEKMKTNLGYMGHLVLVAEEIVKFSRLYKVELISPDIQETL 795
                 **************************************666666799**************************************************** PP

        SAPS 468 eneeWeeyveetLeetreken 488
                  +e+W+ y++e+L++tr +++
  CCD23650.1 796 IDEDWQYYSNEVLNDTRIMYS 816
                 *****************9997 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 0.27
        SAPS 275 askeesaesedltdkdedvsleesksakd..................enkesdesesdtaees 319
                 +++  +++++dl++k +++ +++ +++ d                  e ++++es+s    e+
  CCD23650.1 867 EEQLIQSTESDLHNKLREMLVSQAQEDVDtknakngviilgpppsdkEGEKEEESNS----ED 925
                 333334445555555555555555544444444455555555543331111111111....11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1325  (0.0739026); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 6441.07
//
Query:       CCD23651.1  [L=316]
Description: hypothetical protein NDAI_0B06200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-13   49.9   5.3    5.4e-13   48.9   5.3    1.6  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   5.3     3e-17   5.4e-13       1      63 []      50     111 ..      50     111 .. 0.95

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 3e-17
                 HHHHHHTSSTTG..-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskda..sedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 d+Y++L+++k a  s+ eI+k+ rkl++kyHPDkn   ++ ++ ++++n A+++L ++e Rk+YD
  CCD23651.1  50 DFYKFLKLPKLAhsSSREITKNLRKLSKKYHPDKN---KKYKKLYQRLNLATQFLANDELRKNYD 111
                 79********97547999*****************...8899**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1288  (0.0718389); expected 358.6 (0.02)
Passed bias filter:                      731  (0.0407719); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 2545.68
//
Query:       CCD23652.1  [L=221]
Description: hypothetical protein NDAI_0B06210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1681.60
//
Query:       CCD23653.1  [L=265]
Description: hypothetical protein NDAI_0B06220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-07   32.0   2.1     0.0053   17.4   0.2    2.4  2  Adaptin_binding  Alpha and gamma adaptin binding protein p34
  ------ inclusion threshold ------
       0.12   12.0   2.2       0.44   10.1   0.1    2.2  2  Hormone_recep    Ligand-binding domain of nuclear hormone rec


Domain annotation for each model (and alignments):
>> Adaptin_binding  Alpha and gamma adaptin binding protein p34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   6.1e-06     0.055       1      19 [.     178     196 ..     178     210 .. 0.86
   2 !   17.4   0.2   5.9e-07    0.0053      88     118 ..     226     257 ..     205     260 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.1e-06
  Adaptin_binding   1 ekqGieRirEaLethmWsg 19 
                      e+ Gi+RirE++++h W +
       CCD23653.1 178 ETVGIKRIRELIDVHNWDS 196
                      789**************86 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 5.9e-07
  Adaptin_binding  88 dlesllsklqqakdnvrnlpd.eeRkkeAakv 118
                      dle++++kl+qak ++++++d   + ++A+++
       CCD23653.1 226 DLENIIQKLKQAKLHYQTISDkSDADAYAEEL 257
                      9********************9999****997 PP

>> Hormone_recep  Ligand-binding domain of nuclear hormone receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.3     0.026   2.3e+02      72     124 ..      28      86 ..      12      89 .. 0.64
   2 ?   10.1   0.1   4.9e-05      0.44      97     154 ..     120     174 ..      97     191 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.026
                    EEEEECTCEEE..........HHHHCCTTHHHHHHHHH..............HHHHHHH CS
  Hormone_recep  72 nildekilllsddsa..nkekiedskvskssekeqlll....fgpkiiklfdeliqplq 124
                     i+++ +l+l ++++   ++ i+  k+++++ ++++ l    +++ ++++ +  +++++
     CCD23653.1  28 EIFGSSNLMLNKYHEdtIDNIIKNVKWKTKYYEVTIDLfidqYDDLLEWIDEYTSDSMI 86 
                    55666666666666666677777778888777777777444456666666666666655 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 4.9e-05
                    TTHHHHHHHHH..........HHHHHHHHCT--HHHHHHHHHHHHCTSSS--STTH.. CS
  Hormone_recep  97 skssekeqlllfgpkiiklfdeliqplqelkltetEfafllaillfnfagdrlqgetq 154
                    +++s+ +++++ + +++   del q l+e +lt++E++ l   l+++   d   +et+
     CCD23653.1 120 TTNSFLIFANTSDYVVNDSIDELYQTLMEYELTSVEVVSLNSCLVLS---DQRGEETN 174
                    566777888889999999**********************9999977...44334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1087  (0.060628); expected 358.6 (0.02)
Passed bias filter:                      631  (0.0351944); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1923.72
//
Query:       CCD23654.1  [L=519]
Description: hypothetical protein NDAI_0B06230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-32  112.5   0.0    3.4e-32  111.8   0.0    1.3  1  Peptidase_M20  Peptidase family M20/M25/M40
    1.1e-11   44.7   0.0    1.8e-11   43.9   0.0    1.4  1  M20_dimer      Peptidase dimerisation domain
  ------ inclusion threshold ------
      0.053   13.2   0.0      0.086   12.5   0.0    1.3  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M20  Peptidase family M20/M25/M40
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   5.8e-36   3.4e-32       1     206 [.     136     511 ..     136     512 .. 0.88

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 5.8e-36
                    EEEEES-BSSTTCGGGSSS.TTSEE..ETTTEEESTTTTTTHHHHHHHHHHHHHHHHHTTT-SSEEEEEEESTTSSTTTHHHHHHHHHHTTTCESE CS
                    xxxxxxxxxxxxxxxxxxx.xxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20   1 llgsHlDvVpeeetdgwtt.pfslt..eedGklyGrGaddmkggvlaalealralkdegikpkgtivllfqpdEEggrgGakallegleerekvda 93 
                    l+++H+Dv+p+  +dgw++ pf+lt  e + +l +rG++d++g +l++l+++ra++d+gi+ + ++   f++ EE+g+ G  +l+++   ++ +++
     CCD23654.1 136 LVYGHYDVQPASLEDGWDSePFKLTvdESKQVLKARGSSDDTGPLLGWLHVVRAHRDAGIEFPVNLITCFEGMEESGSLGLDNLIAHEA-EKYFKG 230
                    689*******555589*********5544459*******************************************999********444.344555 PP

                    EEEEEEESSSBTCHSTETEEEE.......................................................................... CS
                    xxxxxxxxxxxxxxxxxxxxxx.......................................................................... RF
  Peptidase_M20  94 vfelhieepgileagklaigvv.......................................................................... 115
                    v  + i++  +l   ++++ ++                                                                          
     CCD23654.1 231 VDTVCISDNYWLG--TKKPVLTyglrgcnyyqiivegpaadlhsgmfggiiaepmtdliqimnslvdskgkilikgidemvapvtekemelyekie 324
                    4445566444444..444555567888888888888888888888889999********************************************* PP

                    ...........................................................................................EEEEE CS
                    ...........................................................................................xxxxx RF
  Peptidase_M20 116 ...........................................................................................kveve 120
                                                                                                               +++ e
     CCD23654.1 325 fsleelqaasgsktelykkkedilmhrwrypslslhgiegafssagaktvipakvngkfsirtvpdmksekltqlvvdhcnsvfkslnspnRCKTE 420
                    ******************************************************************************************77**** PP

                    EEEEESHEEEC.CHHHHHHHHHHHHHHHTSCEEEEEES...SSBHTHHHHTTTEEEEE..EESSGGCTTSTTTEEEHHHHHHHHHHHHHHHH CS
                    xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M20 121 lleggapvtln.dsplvkalaeaaeelfgekvelivsg...pggtdarffagiptvmi..fgpgsglaHspnEyvdledlekgikvlarlle 206
                    l+++g  ++++  ++ + a+a+a++e++g++++ +  g   p++  +  ++++ +v++  +g+g+++aHs+nE++d++++ +gik++a++l 
     CCD23654.1 421 LIHDGDYWVSDpFNASFSAAAKATKEVYGVEPDYTREGgsiPITLTFEKVLKT-SVLLlpMGRGDDGAHSVNEKLDISNYINGIKLMAAYLH 511
                    99*********9677777888899*****998888555377788888888777.66445999999***********************9986 PP

>> M20_dimer  Peptidase dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0     3e-15   1.8e-11       2     106 ..     252     409 ..     251     412 .. 0.93

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 3e-15
                 EB-EEEEEEEEEE-..B-EEGG.-TTTTB-HHHHHHHHHHCSCTTEEC................................................... CS
   M20_dimer   2 ghkGlaggkitvkg..kagHsg.apgagaNAieklarllaeledeegdia..............................................eer 51 
                 g++G   + i v+g   ++Hsg ++g  a +++ l++++++l d +g+i                                               + +
  CCD23654.1 252 GLRGCNYYQIIVEGpaADLHSGmFGGIIAEPMTDLIQIMNSLVDSKGKILikgidemvapvtekemelyekiefsleelqaasgsktelykkkediLMH 350
                 6777777777755511578*****************************99************************************************* PP

                 TCCTCCCCCEECCE-C....CCCEESSEEEEEEEEEHHHHHHHHHHHHHHHHHHTSCCS CS
   M20_dimer  52 slprttlnvtgiegGs....aknvipdeaeakidiRllpgedpeevleeieeilekeap 106
                 ++++++l++ gieg +    ak+vip+++  k++iR++p ++ e++ + ++++++++ +
  CCD23654.1 351 RWRYPSLSLHGIEGAFssagAKTVIPAKVNGKFSIRTVPDMKSEKLTQLVVDHCNSVFK 409
                 ******************************************************98865 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.4e-05     0.086       3      86 ..     123     223 ..     121     252 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
                    EEEESTTCE.SEEEEEEEE--B-TTT................TCC...T---TTTTHHHHHHHHHHHHHCHHGGCCSSEEEEEEEESSCSGSSHHH CS
  Peptidase_M28   3 iatlegkat.devlllgAHyDsvgvg................rgp...ifvGAdDnAsgvaalLelarvlaasgsrpkrgvrflffdaEEagllGS 78 
                    +a++ g+++ ++++l+ +HyD  + +                + +      G  D+  +    L ++r+  + g +   +++  f + EE g lG 
     CCD23654.1 123 LARY-GSDPkKKTVLVYGHYDVQPASledgwdsepfkltvdeS-KqvlKARGSSDDTGPLLGWLHVVRAHRDAGIEFPVNLITCFEGMEESGSLGL 216
                    5666.4555488************999*****99999998752.2568888***********************9********************9 PP

                    HHHHHHHC CS
  Peptidase_M28  79 kafakakp 86 
                    ++++ a++
     CCD23654.1 217 DNLI-AHE 223
                    9999.554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3613.26
//
Query:       CCD23655.1  [L=328]
Description: hypothetical protein NDAI_0B06240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-43  144.2   9.0    2.2e-20   72.4   0.2    4.5  3  Mito_carr        Mitochondrial carrier protein
     0.0011   18.2   0.8      0.069   12.3   0.0    3.0  3  Serine_protease  Gammaproteobacterial serine protease
     0.0056   16.6   0.1       0.12   12.3   0.0    2.6  3  DUF5506          Family of unknown function (DUF5506)
  ------ inclusion threshold ------
      0.079   13.3   0.0       0.17   12.3   0.0    1.5  1  CUB              CUB domain


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   8.1e-09   3.6e-05       5      40 ..       9      44 ..       5      87 .. 0.83
   2 !   47.1   1.8   3.7e-16   1.7e-12       7      95 ..      98     228 ..      94     230 .. 0.87
   3 !   72.4   0.2   4.8e-24   2.2e-20       8      95 ..     237     321 ..     235     323 .. 0.95

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 8.1e-09
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS CS
   Mito_carr  5 vlkellaGglagavatlvttPldvvKtrlqtqkkss 40
                ++++l+aG++a++++t++ +P++++Kt +q+q++ s
  CCD23655.1  9 LINQLVAGCTAAIFQTTISYPFEYIKTGIQLQRNGS 44
                6789***************************99875 PP

  == domain 2  score: 47.1 bits;  conditional E-value: 3.7e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH............................................CCCSSTTTSCSS........HHHHHH CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqt............................................qkksskksksaa........ildvlk 53 
                 + l+aG+l g+++++ + P++ +Kt +                                              q          +        i++++k
  CCD23655.1  98 RLLVAGMLTGIMESVSIIPFENLKTTMIEngirksvladikdvsdavnikgklniaktfhkpnaqltnkqlmfQ----------HyekypstnIFSTVK 186
                 5699***********************999*******************9999999988877776665544331..........133444555****** PP

                 HHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr  54 kiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 +iy + G+rg+ +G +p++lr++++sa++f++y tlk+++  
  CCD23655.1 187 EIYLTRGFRGFLQGSMPTMLRQVSNSAVRFTTYTTLKQIYSS 228
                 *************************************99875 PP

  == domain 3  score: 72.4 bits;  conditional E-value: 4.8e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                  +++G+++ ++ + +t+P+dvvKtr+q++   + +++    ++++++i+ eeG++ l++G++p+l++v  + ++ f++ye++ +l+++
  CCD23655.1 237 AFAIGAVSSCAVVAMTQPIDVVKTRMQSKFAPNYYKN---SINCVYRIFVEEGISTLWKGWMPRLFKVGLSGGISFGVYEYVNNLMNT 321
                 5899*************************99998877...8******************************************99975 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.011        50     173     196 ..       9      32 ..       3      40 .. 0.87
   2 ?   -1.2   0.1      0.21   9.2e+02     179     199 ..     102     122 ..      98     194 .. 0.53
   3 !   12.3   0.0   1.5e-05     0.069      10      56 ..     241     284 ..     234     299 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.011
  Serine_protease 173 lynkllaGalsGviAtvlttifns 196
                      l+n+l+aG ++ +  t+++++f  
       CCD23655.1   9 LINQLVAGCTAAIFQTTISYPFEY 32 
                      589******************975 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.21
  Serine_protease 179 aGalsGviAtvlttifnsykD 199
                      aG+l+G++ +v   +f  +k 
       CCD23655.1 102 AGMLTGIMESVSIIPFENLKT 122
                      566666665555555544432 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 1.5e-05
  Serine_protease  10 tavisfsvsaltsPfkalLtnlqkdgsvlpsaysgGlfralYrGfla 56 
                       av s +v+a+t+P+ ++ t++q +  ++p+ y++  +  +Yr f+ 
       CCD23655.1 241 GAVSSCAVVAMTQPIDVVKTRMQSK--FAPNYYKNS-INCVYRIFVE 284
                      468899*****************86..9**888877.7888886655 PP

>> DUF5506  Family of unknown function (DUF5506)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.07   3.1e+02     110     134 ..      55      79 ..      20      89 .. 0.82
   2 !   12.3   0.0   2.6e-05      0.12      77     149 ..     170     237 ..     145     243 .. 0.84
   3 ?   -2.1   0.0      0.73   3.3e+03     111     142 ..     292     323 ..     259     326 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.07
     DUF5506 110 asgalplmlgwarstglrfstftys 134
                  sg+  l +g    t lrf tf  +
  CCD23655.1  55 FSGCSALNVGAVLKTTLRFGTFDKA 79 
                 58888999999999*******9765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 2.6e-05
     DUF5506  77 fyhhgkvprgrwfklyrndwckdpnltvgnyivasgalplmlgwarstglrfstftysdealwshrrrdrrla 149
                 f h+ k p    f       +k+  lt g      g++p ml    ++++rf+t+t   +   shr  d + a
  CCD23655.1 170 FQHYEKYPSTNIFS-----TVKEIYLTRGFRGFLQGSMPTMLRQVSNSAVRFTTYTTLKQIYSSHRTFDEKAA 237
                 55555555555554.....3577889999999999*******************************9998765 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.73
     DUF5506 111 sgalplmlgwarstglrfstftysdealwshr 142
                  g +p ++    s g+ f  + y ++ + + +
  CCD23655.1 292 KGWMPRLFKVGLSGGISFGVYEYVNNLMNTVQ 323
                 45566666667788888888888877666555 PP

>> CUB  CUB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.7e-05      0.17       9      37 ..     259     287 ..     252     290 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.7e-05
                 EEEEESTTTTS---SS-EEEEEEE--TTE CS
         CUB   9 sgsisspnypkeYeenkeCvweiraekgs 37 
                 +++++s+  p+ Y+++ +Cv++i +e+g 
  CCD23655.1 259 KTRMQSKFAPNYYKNSINCVYRIFVEEGI 287
                 5678999****************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2315.91
//
Query:       CCD23656.1  [L=490]
Description: hypothetical protein NDAI_0B06250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.012   15.5   0.1       0.03   14.3   0.1    1.7  1  APOBEC_C      APOBEC-like C-terminal domain
       0.57   10.5  11.0       0.15   12.4   1.5    3.4  3  ATP-synt_E_2  ATP synthase epsilon subunit


Domain annotation for each model (and alignments):
>> APOBEC_C  APOBEC-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.1   3.3e-06      0.03      25      77 ..     380     434 ..     371     435 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-06
                 HHHHHTTEEEEE-SHHHHHHHHHHHBTTTT-S---..-TTHHHHHHHHHHHHHHH CS
    APOBEC_C  25 rrLvqagvkvkiMsykeFehcWenFVdnegepfkp..wekleensellkekLeei 77 
                 ++L+++++++  +s +e +++++nF ++e+ + kp  w+ l+  s+++ ++L +i
  CCD23656.1 380 KKLIENQIPMGALSINELQETFSNFLEKENIKLKPytWTALQGISQQVLRRLIKI 434
                 68999***********************999999888**************9887 PP

>> ATP-synt_E_2  ATP synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       1.4   1.3e+04      23      52 ..       6      35 ..       5      37 .. 0.64
   2 ?    3.3   0.2     0.011     1e+02      13      29 ..     166     182 ..     155     185 .. 0.83
   3 ?   12.4   1.5   1.6e-05      0.15       3      39 ..     346     382 ..     344     387 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.4
  ATP-synt_E_2 23 KKsElLkkiNmEYEKlLKqRLdeLeklKrk 52
                  K ++ L++ N E     K+R  e +++K +
    CCD23656.1  6 KYNDALSDNNSEIITPFKERALEEQRIKEQ 35
                  556777777777777777776666666665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.011
  ATP-synt_E_2  13 lniLkskLdeKKsElLk 29 
                   +  Lk +L+eKK   L+
    CCD23656.1 166 ITPLKRSLEEKKTSTLS 182
                   5569********99887 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 1.6e-05
  ATP-synt_E_2   3 eidkstiDKYlniLkskLdeKKsElLkkiNmEYEKlL 39 
                   +i k t DKY  i  s+ ++ Ks++ ++ Nm  EK L
    CCD23656.1 346 NIPKLTYDKYSAIPWSNKNDSKSDIFEDTNMSIEKKL 382
                   68899*****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1064  (0.0593452); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3827.46
//
Query:       CCD23657.1  [L=1013]
Description: hypothetical protein NDAI_0B06260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-09   36.8   3.4      6e-09   35.7   0.0    3.4  4  IBN_N     Importin-beta N-terminal domain


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   3.4e-13     6e-09       1      72 [.      21      98 ..      21     100 .. 0.92
   2 ?   -2.9   0.0      0.38   6.8e+03      11      27 ..     123     139 ..     119     149 .. 0.76
   3 ?   -1.4   0.1      0.13   2.2e+03      15      40 ..     173     198 ..     171     203 .. 0.84
   4 ?   -2.8   0.0      0.35   6.4e+03      16      35 ..     682     700 ..     678     708 .. 0.78

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 3.4e-13
                HHHHHHHHHC..STCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC....GSXHHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlek..qpgflsallqilanseselevRqlAalyLknlitkhWsdeeekq....slpseekeqIrnnllnll 72
                Ae qL q+      + + +l+  + ++++++ +Rq+A+l L++lit +Ws+  e+     ++ +++ke+Ir++lln  
  CCD23657.1 21 AESQLLQACDtnAAQIFTSLMKGACDGNTDIASRQFALLSLRKLITMYWSPGFESYrntsTINDQTKEYIRESLLNIC 98
                7899999999888899999*******************************8888888889***************975 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.38
                 STCHHHHHHHHHHCTTS CS
       IBN_N  11 qpgflsallqilanses 27 
                 +p+ +++ll il ++ s
  CCD23657.1 123 FPDQWPQLLVILYDTIS 139
                 79999999999987544 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.13
                 HHHHHHHHHCTTSHHHHHHHHHHHHH CS
       IBN_N  15 lsallqilanseselevRqlAalyLk 40 
                 l+ ++q+l+n e ++e++ +A  ++ 
  CCD23657.1 173 LQIIFQVLSNNEGKIEAKIAATKLFN 198
                 78899**************9987776 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 0.35
                 HHHHHHHHCTTSHHHHHHHH CS
       IBN_N  16 sallqilanseselevRqlA 35 
                 + ll++l +s+ + e+ qlA
  CCD23657.1 682 QPLLNVLNHSTED-ETLQLA 700
                 6699999999999.777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1013 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 7049.41
//
Query:       CCD23658.1  [L=182]
Description: hypothetical protein NDAI_0B06270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-11   43.4   0.1    0.00035   20.9   0.0    3.6  3  Ank       Ankyrin repeat
    3.9e-09   36.0   0.0     0.0033   17.8   0.0    3.2  3  Ank_3     Ankyrin repeat
    4.6e-09   36.4   0.0    0.00018   21.7   0.0    3.7  4  Ank_5     Ankyrin repeats (many copies)
    1.1e-07   32.3   0.0    1.8e-07   31.6   0.0    1.4  1  Ank_2     Ankyrin repeats (3 copies)
     0.0029   18.2   0.1       0.28   11.8   0.0    2.6  2  Ank_4     Ankyrin repeats (many copies)
  ------ inclusion threshold ------
       0.12   12.8   0.0       0.24   11.8   0.0    1.5  1  YjzC      YjzC-like protein


Domain annotation for each model (and alignments):
>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.1e-06     0.018       2      26 ..      50      75 ..      49      82 .. 0.82
   2 !   20.9   0.0   1.2e-07   0.00035       1      32 []      85     123 ..      85     123 .. 0.87
   3 ?    2.8   0.1     0.059   1.8e+02      20      31 ..     142     153 ..     130     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6.1e-06
                SBBHHHHHHHHTTHHHHHHHH.T.TTS CS
         Ank  2 GnTPLHlAatngkkriiklLL.h.GAn 26
                GnT+LHl + +g+++++  +L + G +
  CCD23658.1 50 GNTALHLSCKYGSWEVLDKILdQeG-D 75
                9**************9987776446.4 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 1.2e-07
                 TSBBHHHHHHHHTT......HHHHHHHH.TTTSTTCBTT CS
         Ank   1 dGnTPLHlAatngk......kriiklLL.hGAnlnaldn 32 
                 dG+TPLH A+++++      + i+++L+  GA++ +++n
  CCD23658.1  85 DGDTPLHSAVRYAQdepehgEFIAQNLIeVGADPRIRNN 123
                 9*********77777788888999****55****99997 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.059
                 HHHTTTSTTCBT CS
         Ank  20 lLLhGAnlnald 31 
                 +LL+GA+l+a +
  CCD23658.1 142 DLLQGAELAADN 153
                 5899****9987 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       3.2   9.7e+03       9      22 ..      15      28 ..      15      34 .. 0.73
   2 !   17.8   0.0   1.1e-06    0.0033       2      29 ..      50      76 ..      49      78 .. 0.90
   3 !   14.6   0.0   1.2e-05     0.037       1      31 []      85     120 ..      85     120 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.2
       Ank_3  9 AarsgnleivkfLl 22
                A r +n+++++ ++
  CCD23658.1 15 ASRRNNVDLLEQIF 28
                66888888887765 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.1e-06
       Ank_3  2 GetpLhlAarsgnleivkfLlenkgadv 29
                G+t+Lhl +++g+ e+++ +l+    d+
  CCD23658.1 50 GNTALHLSCKYGSWEVLDKILD-QEGDI 76
                9********************9.67776 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 1.2e-05
       Ank_3   1 nGetpLhlAarsgnl.....e.ivkfLlenkgadvna 31 
                 +G tpLh A+r++       e i++ L+e  gad+++
  CCD23658.1  85 DGDTPLHSAVRYAQDepehgEfIAQNLIE-VGADPRI 120
                 699************66555478******.8***975 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.7   1.1e+04      23      33 ..      15      25 ..      13      34 .. 0.70
   2 !   21.7   0.0   6.1e-08   0.00018      10      41 ..      44      75 ..      39      91 .. 0.75
   3 ?    3.8   0.0     0.026        79      10      26 ..      84      96 ..      76     100 .. 0.73
   4 !    7.4   0.0    0.0018       5.5      31      55 ..     107     131 ..     107     132 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.7
       Ank_5 23 Aakygaadvvr 33
                A+++++ d+++
  CCD23658.1 15 ASRRNNVDLLE 25
                67777777766 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 6.1e-08
       Ank_5 10 nrldgggntpLhvAakygaadvvrlLlargad 41
                 ++d+ gnt+Lh+++kyg+++v+ ++l+ + d
  CCD23658.1 44 TAKDPLGNTALHLSCKYGSWEVLDKILDQEGD 75
                578999********************944444 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.026
       Ank_5 10 nrldgggntpLhvAaky 26
                 + d    tpLh A++y
  CCD23658.1 84 MDGD----TPLHSAVRY 96
                4444....******997 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0018
       Ank_5  31 vvrlLlargadlnltdsrGltaldl 55 
                 ++++L++ gad+++++++++ ++dl
  CCD23658.1 107 IAQNLIEVGADPRIRNNHNQKPIDL 131
                 67899999***************97 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0     6e-11   1.8e-07       5      82 ..      16     121 ..      12     122 .. 0.64

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 6e-11
       Ank_2   5 akngnlelvklLl....eg....adpn.....k..ngktaLhyAakngnleivklLleh.........adndgrtpLhyAars.....gh.leivklLl 73 
                 ++ +n +l++++     +     a  +     k   g+taLh+++k+g+ e++  +l++          d dg tpLh A+r+      h + i++ L+
  CCD23658.1  16 SRRNNVDLLEQIFttldNDeekiA--DlintaKdpLGNTALHLSCKYGSWEVLDKILDQegdieidpkNDMDGDTPLHSAVRYaqdepEHgEFIAQNLI 112
                 555555666666544331122222..12223315689************9***9999866787756533388**********97654423235666788 PP

       Ank_2  74 ekgadinlk 82 
                 e gad+ ++
  CCD23658.1 113 EVGADPRIR 121
                 778888776 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00086       2.6      20      50 ..      41      65 ..      12      70 .. 0.70
   2 !   11.8   0.0   9.4e-05      0.28       2      44 ..      51      95 ..      50     100 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00086
       Ank_4 20 LlekgadinaqdnrsGetalhiAakrgnvei 50
                L+      n  ++  G+talh  +k g+ e+
  CCD23658.1 41 LI------NTAKDPLGNTALHLSCKYGSWEV 65
                44......3443334*********9997555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 9.4e-05
       Ank_4  2 ltaLhyaaisgrlelvrlLlek..gadinaqdnrsGetalhiAak 44
                +taLh  +++g  e+++ +l++  +++i+   + +G+t+lh A++
  CCD23658.1 51 NTALHLSCKYGSWEVLDKILDQegDIEIDPKNDMDGDTPLHSAVR 95
                7999999999999*******887459999997788********96 PP

>> YjzC  YjzC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     8e-05      0.24      11      43 ..      98     137 ..      91     139 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8e-05
        YjzC  11 ekapnnGtY.....vevG..etgsevkdpkevkLekGdrF 43 
                 ++ p+ G +     +evG  ++  ++++ k + L +Gd F
  CCD23658.1  98 QDEPEHGEFiaqnlIEVGadPRIRNNHNQKPIDLIHGDDF 137
                 78899****99999****999*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1366.63
//
Query:       CCD23659.1  [L=605]
Description: hypothetical protein NDAI_0B06280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-52  177.5   0.2      4e-52  176.9   0.2    1.3  1  DUF155    Uncharacterised ACR, YagE family COG1723


Domain annotation for each model (and alignments):
>> DUF155  Uncharacterised ACR, YagE family COG1723
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.9   0.2   2.2e-56     4e-52       1     176 []     372     551 ..     372     551 .. 0.96

  Alignments for each domain:
  == domain 1  score: 176.9 bits;  conditional E-value: 2.2e-56
      DUF155   1 vfiFknGsvVfwgldeeeeknflnkllkflnees...elpreeeqeteeleyvydeqsessrikgdvivlkskslleklaiShalaqSvkLdvlEesld 96 
                 +f+F++G++Vfw+++e +ekn+l +++  + +      + +e+  ete++++ yd+++e++ri +d+++l+s +++  l++Sha+aqS kL+ +E++++
  CCD23659.1 372 IFVFHYGVIVFWNFTEVQEKNLLGDITFSYYRRNlviRPLDEQDIETEQFHFGYDKNTERPRIFNDIVTLRSGDHMIELTLSHAIAQSSKLSRFESRIS 470
                 7**************************9987777888777777777***************************************************** PP

      DUF155  97 ellestekipkelakkgklklsrkellkktgellslrinlnlkselldtPdffWee.peleslyeavseyleikeRikiLn 176
                  ll+s++k+pk+la  g+l l+r++llkk g+l++lr ++nl+s++ld+P+ffW+  p+l +ly a++eylei++R+++Ln
  CCD23659.1 471 PLLTSITKLPKRLALYGTLGLKRSQLLKKSGKLFKLRVDVNLSSSILDSPEFFWSTePSLSPLYIAMREYLEIDQRVQVLN 551
                 *****************99***********************************655***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4205.21
//
Query:       CCD23660.1  [L=186]
Description: hypothetical protein NDAI_0B06290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.4e-42  142.5   4.6    7.5e-42  142.3   4.6    1.0  1  Brr6_like_C_C  Di-sulfide bridge nucleocytoplasmic transport 
  ------ inclusion threshold ------
      0.029   14.7   0.0      0.048   14.0   0.0    1.3  1  DUF2778        Protein of unknown function (DUF2778)


Domain annotation for each model (and alignments):
>> Brr6_like_C_C  Di-sulfide bridge nucleocytoplasmic transport domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.3   4.6   8.3e-46   7.5e-42       2     133 .]      39     172 ..      38     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 142.3 bits;  conditional E-value: 8.3e-46
  Brr6_like_C_C   2 sylqllfnlllvllllylvisfvltikkDiekkleekkaellaeieeCkkeYeeNkCdpetrvpaleekCeewekCmnrdp..eskverakvsaet 95 
                    +y+ql+fn+l+++++l+l+i+f++++++D+++k++       ++ie+Ck++Ye N+Cd +trvpale++C+ew +C + ++  + + +++ ++a+t
     CCD23660.1  39 EYFQLAFNVLVASITLFLFIKFLYMVNRDVDSKVQMLILSDIYKIEKCKHDYEMNQCDLKTRVPALEDQCNEWFHCFQPNStvNVTGSSSILWAQT 134
                    7*****************************************************************************9997766678999***** PP

  Brr6_like_C_C  96 laeiinsfvepislktllfllllllivlfvsnvafgfl 133
                    lae++n+fvepis++tll+lll+++ +++v+nvafg++
     CCD23660.1 135 LAEVVNAFVEPISIRTLLVLLLSTCSIIIVTNVAFGSY 172
                    ***********************************986 PP

>> DUF2778  Protein of unknown function (DUF2778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.4e-06     0.048      29      67 ..      87     125 ..      81     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.4e-06
     DUF2778  29 pgtYeiveresgglngkvkekrseWFalvradrkiddet 67 
                 ++ Ye+++++ +   ++++++++eWF+ +++++++++++
  CCD23660.1  87 KHDYEMNQCDLKTRVPALEDQCNEWFHCFQPNSTVNVTG 125
                 689****************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1368.39
//
Query:       CCD23661.1  [L=127]
Description: hypothetical protein NDAI_0B06300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-30  104.9   0.0    8.7e-30  104.7   0.0    1.0  1  S36_mt    Ribosomal protein S36, mitochondrial


Domain annotation for each model (and alignments):
>> S36_mt  Ribosomal protein S36, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.7   0.0   4.9e-34   8.7e-30       1     115 []      13     126 ..      13     126 .. 0.93

  Alignments for each domain:
  == domain 1  score: 104.7 bits;  conditional E-value: 4.9e-34
      S36_mt   1 tPmIkFlGkrtiPasvdhtpk..pHPaspsgslPesksfasyreklqqhgplkkvpyksskkskskseggiggasgsslgsvepkkgeffdrs...... 91 
                 tPmIkF+G+++  +++dh +k  pHP++ +++lP+s++++s++e+l++++p+ +vp k++ k+++k       +sg+++ s    ++++fdr+      
  CCD23661.1  13 TPMIKFVGTKH--PMIDHPNKiiPHPCTINNMLPGSQDCISVQEYLKNIKPFVVVPFKQTPKQTTK-------GSGRDDAS----RYVYFDRPlkdnev 98 
                 7**********..89***666*************************************77777755.......66666666....9************* PP

      S36_mt  92 ....eLParfrrkpideaEieaiesGGa 115
                     +LP+rfr ++ide E+e i++GG+
  CCD23661.1  99 saisDLPERFRPRTIDEIEVEFINNGGV 126
                 ***************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       305  (0.0170115); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 994.83
//
Query:       CCD23662.1  [L=265]
Description: hypothetical protein NDAI_0B06310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-24   84.5   0.0    7.5e-24   84.3   0.0    1.1  1  Proteasome  Proteasome subunit
  ------ inclusion threshold ------
      0.053   13.8   0.1        4.6    7.5   0.0    2.2  2  IFT81_CH    Intraflagellar transport 81 calponin homology dom


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   8.4e-28   7.5e-24       2     190 .]      39     232 ..      38     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 8.4e-28
                 HHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHH.....HHHHHHHHHHHSSGTCHHHHHHHHHHHHHHH CS
  Proteasome   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrra.....raeaqlyrlrygrpipverlvarvaaklqay 95 
                  +Gt+v+ +k+++gv++aad+  ++gs l  ++ +e+++k+ + ++v+++G+++D++ + + +     +++ ++   + ++ ++++++ +++aa +  y
  CCD23662.1  39 VTGTSVLSMKYNNGVIIAADNLGSYGSLLRFND-IERLIKVGKSTIVGISGDISDMQHIEKLLddmeiENNYDNLYANDEEALKPSYVFEYLAAVM--Y 134
                 58***************************9999.9**********************998876211114455555667788999997777777766..4 PP

                 HHHCTTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH.....STTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEE CS
  Proteasome  96 tqrsgrrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekey.....kedltleeavelavkalkealerdklsgknievav 189
                   rs+++p+  +l++agv  +g+p+L +++  G  ++  +  a+G g++ a+++l++         + +l+ a+ ++++++k +++rd+ s+ ++++a+
  CCD23662.1 135 NRRSKMNPLWNALIVAGVE-DGKPFLRYVNLLGVTYSS-PTLATGFGAHLAIPLLRRVIdnesdIAKTDLDTAKNTILECMKVLYYRDARSSRKFSLAI 231
                 4578889999999999999.999***************.6*****************9988655666889999************************99 PP

                 E CS
  Proteasome 190 i 190
                 i
  CCD23662.1 232 I 232
                 7 PP

>> IFT81_CH  Intraflagellar transport 81 calponin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0064        57      33      90 ..      93     151 ..      88     164 .. 0.77
   2 ?    7.5   0.0   0.00052       4.6      47      96 ..     193     240 ..     186     245 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0064
    IFT81_CH  33 LqvLsdvlaeidekekvdireespeeta..lrilelLrilkykppedleleefrqglveg 90 
                 +q + ++l  ++ +++ d   ++ ee+    +++e+L  + y+ ++++ +  + + +v g
  CCD23662.1  93 MQHIEKLLDDMEIENNYDNLYANDEEALkpSYVFEYLAAVMYNRRSKM-NPLWNALIVAG 151
                 788889999999999999999888887623689***********9998.56676666665 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00052
    IFT81_CH  47 ekvdireespeetalrilelLrilkykppedleleefrqglvegekeviy 96 
                 ++ di + + + +   ile++++l y+ +++   ++f   ++  ++ +i+
  CCD23662.1 193 NESDIAKTDLDTAKNTILECMKVLYYRDARS--SRKFSLAIIDNDQGLIF 240
                 568999*********************9998..59999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2165.89
//
Query:       CCD23663.1  [L=540]
Description: hypothetical protein NDAI_0B06320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-09   35.4   0.5    1.2e-08   34.7   0.5    1.3  1  Adap_comp_sub   Adaptor complexes medium subunit family
    1.7e-07   31.3   4.6    2.4e-07   30.8   1.9    2.3  2  Clat_adaptor_s  Clathrin adaptor complex small chain
  ------ inclusion threshold ------
       0.41    9.3   4.6       0.61    8.7   4.6    1.3  1  Ndc1_Nup        Nucleoporin protein Ndc1-Nup
       0.65   10.0   9.9          1    9.3   9.9    1.2  1  DUF2076         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> Adap_comp_sub  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.5   2.6e-12   1.2e-08       4     223 ..     265     491 ..     262     533 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 2.6e-12
                    X.XXXXXXXX-EEEEEEEEEEEEEE-TTS-EEEEEEEEEEEEEE---TT-EEEEEE-SS-EE--SSEESEEEEETT-B-TT..HHHH-EEEE---S CS
  Adap_comp_sub   4 r.rkgikykkneiyldviErvsvlvdkkGkilksevqGtiacksklsgmpelklgLndklnkekkielddvsfHqcVnldk..feservisFiPpd 96 
                    r r++ik ++n i + + E++++ ++++G+i +se +G ++++++       k+ L +  +     + + ++f++++n+dk  f s++ is+ +  
     CCD23663.1 265 RqREEIKRTNNGILILINETINAELQRDGSITSSELKGVLELRVNDPALSHSKIALVESMDV----KDKSFQFKTHPNIDKnqFLSSKLISLRDSK 356
                    54899***************************************************999998....66889************9998888877776 PP

                    .......EEEEEEEEEE...S--SS--SEEEEEEEEE-TTTSEEEEEEEEE.E-S-TT-EEEEEEEEEE--TT-EEEEE.EESST...T-EEEEET CS
  Adap_comp_sub  97 .......geftLmrYrl...sannvklPfsvkpkvklsgdevrveielklk.enfkkkltlenvkisiplpkevsnlai.ktskG...kakynpee 177
                            ++ ++r+r    + +n+ +P+ v ++v+ ++ + +v +e +++ e f+  +++e+  + +++ ke   ++i   s+    k++y+ + 
     CCD23663.1 357 kafpsndQSLGVLRWRKicpQDDNSLVPLLVSTWVSSDPGSIDVTMEFEINeELFDADSNVEFKDLCFNFAKEFADVTImGDSNDhnaKVTYKYG- 451
                    66666658********99*99****************9999*********955666699999999999999995555554333333345555555. PP

                    TEEEEEE--EETT-EE..EEEEEEE--------------.EEEEEE CS
  Adap_comp_sub 178 naleWtikklpggnesslsgeleleaesekkeenprdgklvsveFk 223
                    ++  ++i++l  gn       ++++ +   ++e++  ++ +++eFk
     CCD23663.1 452 KRPTIQIPSLTVGNPG----VVTFTITDDYDDEER-LFP-IDIEFK 491
                    3344555555555522....344444433333333.233.444443 PP

>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   1.9   5.3e-11   2.4e-07       7     132 ..       8     133 ..       2     164 .. 0.90
   2 ?   -0.1   0.0      0.17   7.8e+02      96     111 ..     415     430 ..     384     438 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 5.3e-11
                     EE-TTS-EEEEEESSSS-CHHHHHHHHHHHHHHHTT-SSS-SEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTS-SHH CS
  Clat_adaptor_s   7 ilnkkgkvrlakfytavddkkkqklieevyelvsaRdsklsniveledlkviYkryasLYFvvivdeqeneliilelihlfvesLdkyfgnVcel 101
                     i  ++gk++l + +  + +++  +l+ +   lv++  s+   +ve e ++ +Yk + + Y ++i + q n +  l++++lf ++++  ++n  e 
      CCD23663.1   8 ITTRHGKPLLSRQFRDLTKDRVMELLSNFQGLVANISSD-HTFVEDEHVRYVYKPFDDYYIILITNRQSNIVQDLSTLNLFSQTVNSSLSNFDEN 101
                     7889*******************************9888.7899*************************************************** PP

                     HHHHCHHHHHHHHHCCE.ETTEES---HHHHH CS
  Clat_adaptor_s 102 dlvfnfekvylildEiv.sgGeiletskkevl 132
                     ++  n  ++ +  dEiv +gG   + + ++v 
      CCD23663.1 102 EIYDNAFEILSSFDEIVvMGGYKENLNWNQVE 133
                     ***************97256666666767665 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.17
                     TS-SHHHHHHCHHHHH CS
  Clat_adaptor_s  96 gnVceldlvfnfekvy 111
                     +nV+  dl fnf k +
      CCD23663.1 415 SNVEFKDLCFNFAKEF 430
                     49**********9865 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.6   0.00014      0.61     331     493 ..     128     290 ..      66     293 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00014
    Ndc1_Nup 331 tWsqilkeClklikeltqrinergqpapkaapskapknkasapvkelprlsksplkkk........ddeifgnsltaeaspkssssskegvekalssla 421
                 +W+q+  e  + +++ ++ri++  +           +nk+s++ +e++r +k+  +k+                    +s   +ss++e++  + ++  
  CCD23663.1 128 NWNQV--ETYLAMESHEERIQNIIE-----------QNKESEATEERKRRAKEIARKElerksgvyP-----------SSTFGESSRLERFGPSSDPNV 202
                 45544..444555555555555555...........2333333333333333333332221122222...........223336678888888888888 PP

    Ndc1_Nup 422 kspgqs..psptarlsprarkllekaksrllskeqkealsestikkk.................vekelaqllk.spligylFrqslrrrle 493
                 k+ ++s   +    +s+ a++   ++k+++++++q+++++e  +++                   ++++ ++ + + +i +l +++++++l+
  CCD23663.1 203 KNAYDSyyRN----ASAAAQESYLNSKKQQQQQQQQQSSQEYPYQPTtgigrsasntgashvpkPHRQREEIKRtNNGILILINETINAELQ 290
                 8888776532....233344444444444444444444444444444888888888888888776666666666555688888888888776 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   9.9   0.00023         1      56     147 ..     137     243 ..     135     259 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00023
     DUF2076  56 aLkqanariqeLeaqlqqlqqqaqeaqaqps.........sggFLsglFGggkke.......rpqpspqarpaapagqalgqeeqyaaqpgyaq..... 133
                 a+++ ++riq++ +q +++++++++++++++         sg + s+ FG+ ++                 ++++a   ++++ ++aaq+ y +     
  CCD23663.1 137 AMESHEERIQNIIEQNKESEATEERKRRAKEiarkelerkSGVYPSSTFGESSRLerfgpssD-------PNVKNAYDSYYRNASAAAQESYLNskkqq 228
                 7888999999998888666555555544444667778888**********9999866655542.......22222222222222222222222211110 PP

     DUF2076 134 .qqaqpqygqpaaap 147
                  qq+q+q++q+++ +
  CCD23663.1 229 qQQQQQQSSQEYPYQ 243
                 012222222221111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2241  (0.124993); expected 358.6 (0.02)
Passed bias filter:                      741  (0.0413297); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 3764.25
//
Query:       CCD23664.1  [L=610]
Description: hypothetical protein NDAI_0B06330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-57  193.7   0.0    5.8e-57  193.3   0.0    1.2  1  Ppx-GppA  Ppx/GppA phosphatase family


Domain annotation for each model (and alignments):
>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.3   0.0   3.2e-61   5.8e-57       2     285 .]      33     358 ..      32     358 .. 0.96

  Alignments for each domain:
  == domain 1  score: 193.3 bits;  conditional E-value: 3.2e-61
                 EEEECTTE...EEEEEEEEEE--CCCC.CHCCS.....SC-HHHHHHHHHHHHHHHHHCCCTTG..CCEEEEEEHHHHHSTTHHHHHHHHCCCCSS-EE CS
    Ppx-GppA   2 iarkaagl...lqivarekrkvrLaeg.lnesg.....rlqeeaiertisaLkefaellqkfkv..envrvVATsalRdavNadeFlarvkkevglkve 89 
                 i++kaa++   +++v++++++++L+e  + e+      +++ ++i + ++a+k+f+ ++++f+v  ++vrv AT+ +R+a+N +eF+ ++ +++++ ve
  CCD23664.1  33 ISSKAAHHariMPCVFKDRVGISLYEIqYSEDSslekrPIPHDIIVEICAAMKRFKLICEDFGVseSSVRVLATESTREAINCQEFIDAIHEATNWGVE 131
                 899999999******************9988888999999************************9999******************************* PP

                 EE-HHHHHHHHHHHHHHHT---SSEEEEEEETTEEEEEEEET.....TEEEEEEEES--CCHHHHHHSGCC..C--HHHHHHHHHHHHHH..CTTTHHH CS
    Ppx-GppA  90 iisgeeEarliylgvvssllekgrglviDiGGGStElvlgee.....kevsklvSlplGavrlterfltdd..pltkeeveaarkaveke..leevkde 179
                 ++s eeE+r++++gv+ss+ ++++gl+ D+GG  t+l++++      + +  +v lp+Ga +lt+r   ++   l+ e+++a+ +a++k+  + ++ ++
  CCD23664.1 132 LLSSEEEGRITAYGVMSSY-NTVNGLYMDLGGSTTQLSWIKCkggeiAHSATPVALPYGAWTLTKRLKLENinDLFLEIKNAYTNAIQKIgvPDQMFED 229
                 *******************.********************888888888999999***********988876789**************999******* PP

                 HCCCE...HHCCCCCCCHCCHHCHHHHHHCT.S....SCEEEHHHHHHHHHHHCTSSC...............HHHHHSTTS-CCHHCTHHHHHHHHHH CS
    Ppx-GppA 180 vkkeg...ewtrlvgtsgtisalaeltelhgek....gyeitaeeleeliekllqlkk...............eeelklagvsdeRadvivagalilsa 256
                 ++k+g   + +r++g +g +++++ +t +++++    g++ + ee+ +++++l+ + k               + +  +++vs++Ra++++a++l+lsa
  CCD23664.1 230 AEKKGgfyLIVRGGGFRGLGHLILSQTIEYPIQtiinGFSSPNEEFTSMSDFLFLKGKvpprsaltidnnsssNSSSTIFKVSERRAKQLPAVGLFLSA 328
                 ***999****************************************************************9988999********************** PP

                 HHHHCT-S.EEEEES--HHHHHHHHHHHHH CS
    Ppx-GppA 257 vlealeie.aviisegalrEGvlyslllke 285
                 +++ l+   ++ +seg++rEG +ys+l++e
  CCD23664.1 329 AFDSLPHVkSIYFSEGGVREGTIYSILPRE 358
                 *****998799****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4437.35
//
Query:       CCD23665.1  [L=264]
Description: hypothetical protein NDAI_0B06340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-18   65.2   0.1      9e-18   64.6   0.1    1.2  1  CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
      4e-07   29.7   0.1    5.3e-07   29.3   0.1    1.1  1  SAC3_GANP        SAC3/GANP family
  ------ inclusion threshold ------
       0.02   14.5   0.1      0.098   12.3   0.0    2.0  2  Thymopoietin     Thymopoietin protein


Domain annotation for each model (and alignments):
>> CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.1   1.5e-21     9e-18       1     139 [.     100     237 ..     100     244 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 1.5e-21
  CSN8_PSD8_EIF3K   1 elkaelytniLlkaLtqndladfrlllkrlpaaiqqs..deeiqklltLetlLeeanyakfwstlksddlsadltadvagleelvReeiaklvg 92 
                      e+k++l+++++l++L+q d++ f+ +l+ + ++i +   +  +++ ++L + L+e++y+k w +lk  +  a++  + + l +++Reeia   +
       CCD23665.1 100 ENKSKLVSLYMLILLSQGDVSKFHSELEFVDKHIPDLkeNDLLSYPIELDRWLMEGSYQKAWDLLKAGSKVAEFDVFTKTLMDAIREEIACNTE 193
                      57899***********************99988744333799**************************************************** PP

  CSN8_PSD8_EIF3K  93 kaYesIsadvlaelLglssdeelekfvkevgWeldaatvivpfnpee 139
                       +Y+++   + + lL ++s++e+e f  e+gW++ +    +   ++e
       CCD23665.1 194 LSYSELPLTNVKTLLFFNSEKEAEVFGMERGWKVRNGNI-YF--KDE 237
                      **********************************55444.44..333 PP

>> SAC3_GANP  SAC3/GANP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.1   8.8e-11   5.3e-07     140     291 ..      72     227 ..      60     229 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 8.8e-11
                 HHHHHHHHHHHHHHHHHHHHHH...---TTHHHHHHHHHHHTTT-...HHHHHH...HCTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHHHHT..TS- CS
   SAC3_GANP 140 qqnleqLqkclqsLlelYddlrkkkeelpneaefrayylLlnlrd...pdilre...vqelpseilkspevqlalklvaalqennyvrffklvk..evs 230
                  ++le +q+ + +L+ +Y  +++  ++++n+++++++y+L+ l++   +++ +e   v +   ++ +++ + + ++l + l+e+ y++ ++l+k  +  
  CCD23665.1  72 SLELESFQNYFDQLRLYYFSNNNVLSTSENKSKLVSLYMLILLSQgdvSKFHSElefVDKHIPDLKENDLLSYPIELDRWLMEGSYQKAWDLLKagSKV 170
                 6899****************99777****************99884443334441114444567789999************************54333 PP

                 HHHHHHHGGGHHHHHHHHHHHHHHHS-TT---EEHHHHHHHTT-SSHHHHHHHHHHTT--E CS
   SAC3_GANP 231 ylqacllerhfnevRrkalkalsraykskskkvpleeLaelLlfddeeeaeefceayglev 291
                      + ++ ++ +R+++      +y    +++pl+++++lL+f++e+eae f  + g +v
  CCD23665.1 171 AEFDVFTKTLMDAIREEIACNTELSY----SELPLTNVKTLLFFNSEKEAEVFGMERGWKV 227
                 33457899999*******99999999....79*******************9988888776 PP

>> Thymopoietin  Thymopoietin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.6e-05     0.098      16      37 ..      31      52 ..      28      54 .. 0.93
   2 ?   -1.4   0.0       0.3   1.8e+03       8      21 ..      94     107 ..      89     111 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
  Thymopoietin 16 KSeLvahnVaLPpgesrKdVYV 37
                  K eL+ +nV LP ++++ +VY+
    CCD23665.1 31 KIELLKNNVFLPDPNNQNEVYI 52
                  789******************8 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.3
  Thymopoietin   8 svLtKdrLKSeLva 21 
                    vL+ +  KS+Lv+
    CCD23665.1  94 NVLSTSENKSKLVS 107
                   57777777888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1863.97
//
Query:       CCD23666.1  [L=486]
Description: hypothetical protein NDAI_0B06350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-78  263.0   0.0    2.9e-78  262.6   0.0    1.2  1  Hexokinase_2  Hexokinase
      6e-68  228.7   0.0    1.7e-67  227.2   0.0    1.7  2  Hexokinase_1  Hexokinase
     0.0011   19.1   0.0      0.046   13.8   0.0    2.4  2  DUF2294       Uncharacterized conserved protein (DUF2294)


Domain annotation for each model (and alignments):
>> Hexokinase_2  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.6   0.0   4.8e-82   2.9e-78       1     240 []     227     470 ..     227     470 .. 0.95

  Alignments for each domain:
  == domain 1  score: 262.6 bits;  conditional E-value: 4.8e-82
                   EEEEEESSSEEEEEEEEGGG-GGGTTTS....-TTSEEEEE--GGGTTTT-SS-..--HHHHHHHHHSSSTTS-HHHHCCSHHHHHHHHHHHHHHHH CS
  Hexokinase_2   1 kiGlIlGtGtNacyleklsnieklegkk....eksgemviNtEwgafgdegklpllrtkyDkeldeespnpgeqlfEkmiSGmYLGelvrlvlldli 93 
                   k+G+I+GtG+N++y+e++++i+klegk     +k+g m+iN+E+g+f++e+   l+rtkyD+ +de+sp+pg+q+fEkm+SG+YLGel+rlvl+dl+
    CCD23666.1 227 KMGVIFGTGVNGAYYEDVADIPKLEGKLaddiPKDGPMAINCEYGSFDNEHL-VLPRTKYDILVDEQSPRPGQQTFEKMTSGYYLGELLRLVLVDLH 322
                   69*********************************************98555.556***************************************** PP

                   C.TSSSC.....CCCSTTSS-THHHHHHHC--BTT-HHHHHHHHHCCS---.-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-.....SSEEEE CS
  Hexokinase_2  94 eekllfkgkse.klktpysldteflseieedesedleevrevleellglesvteedleivrevceavsrRaarlvAagiaallkklgkeekekvtvg 189
                   +++l++k+++  kl+++y++dt++ ++ieed+ e+le+++ +l++ lg+++ t ++++++r++ e++++R+a+l+ +giaa+++k g    ++ +v+
    CCD23666.1 323 SKGLILKNQDMtKLNQEYIMDTSYPAKIEEDPFENLEDTDALLKKDLGINT-TVQERKLIRRLSELIATRSAHLSVCGIAAIFQKRGY---KTGHVA 415
                   998887666445*************************************98.*********************************888...6899** PP

                   EESHHHHHSTTHHHHHHHHHHHHHT--S.....-SEEEEE---TTTHHHHHHHHH CS
  Hexokinase_2 190 vdGslyekypkfrerlqealrellgeepe....kkvklklaedGsgvGAAliaav 240
                   +dGs+y+ yp+f er  e lr+++g++p      ++k+ ++edGsg G A+iaa+
    CCD23666.1 416 ADGSVYKMYPGFVERAAEGLRKIYGWTPGpideYPIKICPSEDGSGAGGAIIAAL 470
                   ***************************999999********************95 PP

>> Hexokinase_1  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.2   0.0   2.8e-71   1.7e-67       2     199 .]      27     221 ..      26     221 .. 0.96
   2 ?   -2.2   0.0      0.53   3.1e+03      66      96 ..     313     343 ..     310     358 .. 0.62

  Alignments for each domain:
  == domain 1  score: 227.2 bits;  conditional E-value: 2.8e-71
                   HHHHHHHH---HHHHHHHHHHHHHHHHHHHS.S.STS--EE----S---S--EEEEEEEEESSSEEEEEEEEEESSS-EEEEEEEEE--GGGGGS.B CS
  Hexokinase_1   2 leeilkqfelsdeklkelvdrfleemekgLakekeslkmlptyvtrlPtGkekGtylAlDlGgtnlRvllveLlgeskveitqekykipeelktg.t 97 
                   l+ +++ f++sde+ +++v++f++e++kgL+ke+ +++m+p +v+++P+Gke+G++lA+DlGgtnlRv+lv+L g++++++tq+kykip+ ++   +
    CCD23666.1  27 LKTCEDIFTVSDETSRAVVKHFISELNKGLSKEGGNIPMIPGWVMEYPSGKESGDFLAIDLGGTNLRVVLVKLGGDRTFDTTQSKYKIPDGMRVTkD 123
                   5678889************************99888*******************************************************998879 PP

                   HHHHHHHHHHHHHHHHHHH....ST..T-S-EEEEEEE-SSEE-SBTT--EE-S--TT---TT-TTSBHHHHHHHHHHHTT-SEEEEEEE-HHHHHH CS
  Hexokinase_1  98 aeeLFdfiakciaefleeegeekkeekeeeelplGftFSFPveqtsldegtlirwtKgfaikdvegkdvvqllqealerkglpvkvvalvNDTvgtl 194
                    eeLF+fia+++++f+ee   +  +     +lplGftFS+P +q++++eg+l+rwtKgf+i++veg+dvv+ll+++l++++ p++++al+NDT+gtl
    CCD23666.1 124 REELFAFIADSLKAFIEEVFPDGVT----GTLPLGFTFSYPASQDKINEGILQRWTKGFDIPNVEGHDVVKLLEKHLKEQKIPIEITALINDTTGTL 216
                   999***************9877544....46****************************************************************** PP

                   HHHHH CS
  Hexokinase_1 195 lslaY 199
                   +++ Y
    CCD23666.1 217 VASLY 221
                   **988 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.53
                   EEEEEEEEEESSS-EEEEEEEEE--GGGGGS CS
  Hexokinase_1  66 nlRvllveLlgeskveitqekykipeelktg 96 
                    lR +lv+L++++ +  +q  +k+++e+ ++
    CCD23666.1 313 LLRLVLVDLHSKGLILKNQDMTKLNQEYIMD 343
                   5899999999766444444444544444433 PP

>> DUF2294  Uncharacterized conserved protein (DUF2294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.025   1.5e+02      62      87 ..     120     145 ..     113     151 .. 0.84
   2 !   13.8   0.0   7.7e-06     0.046      56     101 ..     183     229 ..     180     233 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.025
     DUF2294  62 vkqvRteLveeikpelkelieeitgv 87 
                 v + R+eL+  i + lk+ iee++  
  CCD23666.1 120 VTKDREELFAFIADSLKAFIEEVFPD 145
                 55669*****************9865 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 7.7e-06
     DUF2294  56 keGrelvkqvRteLveeik.pelkelieeitgvkvisllsDistetg 101
                  eG+++vk + ++L e+    e+ +li+++tg+ v sl++D +t+ g
  CCD23666.1 183 VEGHDVVKLLEKHLKEQKIpIEITALINDTTGTLVASLYTDSETKMG 229
                 6899**********9998879***********************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3422.81
//
Query:       CCD23667.1  [L=232]
Description: hypothetical protein NDAI_0B06360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-15   55.3   0.0    1.1e-14   54.5   0.0    1.4  1  GST_N     Glutathione S-transferase, N-terminal domain
    5.5e-12   45.7   0.0      1e-11   44.9   0.0    1.5  1  GST_C     Glutathione S-transferase, C-terminal domain
    1.6e-07   31.6   0.0    3.5e-07   30.5   0.0    1.5  1  GST_N_3   Glutathione S-transferase, N-terminal domain
    7.1e-05   22.9   0.1    0.00014   22.0   0.1    1.5  1  GST_C_3   Glutathione S-transferase, C-terminal domain
     0.0044   17.3   0.0     0.0082   16.4   0.0    1.4  1  GST_N_2   Glutathione S-transferase, N-terminal domain
  ------ inclusion threshold ------
      0.044   13.8   0.0      0.078   13.0   0.0    1.4  1  GST_C_2   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   3.7e-18   1.1e-14       5      75 ..       7      82 ..       3      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 3.7e-18
                EESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET......TEEEESHHHHHHHHH CS
       GST_N  5 lysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn......gkkltESraIleYia 75
                 +++++++ra+r+++ll+a+++++e++p+++ +g+ +++ l+k++plg++P +e++      +k l+ES+ I++Y  
  CCD23667.1  7 RVHWLNQSRAFRVLWLLDALKLDFEIIPYKRVDGR-APDSLKKIHPLGRSPIVEIEdkstgkKKMLIESGYIFQYML 82
                5799***************************9996.68******************9***9999***********75 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   3.4e-15     1e-11      23      89 ..     146     212 ..     116     216 .. 0.88

  Alignments for each domain:
  == domain 1  score: 44.9 bits;  conditional E-value: 3.4e-15
                 HHHHHHHHHHHHHHHHHHHHH.TSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTTTTTSHHHHHHHHHH CS
       GST_C  23 lvdealekvaevlsaleeelk.kqdylvGdkltlADialvpilnwlqrlglafgqekfpnlkawleri 89 
                 + + ++ +v++++++le e+  +++ylv+ kl+ ADi++ + +++++ +g++ + e +pn k+wl++i
  CCD23667.1 146 SEAYSRGEVKNQFDFLESEIVkNKGYLVDGKLSAADILVSFPVEMAFLRGFVTS-EIYPNTKKWLDTI 212
                 4567899************99899*****************************9.***********98 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.2e-10   3.5e-07      12      72 ..      18      86 ..      13      95 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.2e-10
                HHHHHHHHHT--EEEE---..TTTTHHHHHHH-TT--SSEEETTS-......EEESHHHHHHHHHHHH- CS
     GST_N_3 12 rvrlaLnekglpvevvevt..pgehdeellaknplgkvPvLeddge......altdSlaIidyLeelyp 72
                rv ++L+ ++l++e+ +     g+ +++l++++plg+ P+ e+ ++      +l +S +I +y  ++++
  CCD23667.1 18 RVLWLLDALKLDFEIIPYKrvDGRAPDSLKKIHPLGRSPIVEIEDKstgkkkMLIESGYIFQYMLQNFD 86
                9**************9987335556****************75433345577**************998 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   4.6e-08   0.00014      18      88 ..     136     214 ..     117     219 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.6e-08
                 H.......HHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH..TCCCC-HHHHHHHHHHHT CS
     GST_C_3  18 a.......ekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea..ealkkfpklkalyervea 88 
                         + ++++ + ++++ ++++e  +  k++gylv +kl+ AD+++   +++       + + +p+ k++ + ++ 
  CCD23667.1 136 YfvqsvvnKLSEAYSRGEVKNQFDFLESEIV-KNKGYLVDGKLSAADILVSFPVEMAFLRgfVTSEIYPNTKKWLDTIKT 214
                 0444455589999***************999.89*************976544433222234445899******999986 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.7e-06    0.0082       5      66 ..      16      80 ..      14      83 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.7e-06
                HHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-CTTE.....EEESHHHHHHH CS
     GST_N_2  5 ahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdkdgq.....vineSseIlry 66
                a Rvl++l  ++l+++i+++   + + ++++ +++++p+g  P+  ++d +      + eS  I +y
  CCD23667.1 16 AFRVLWLLDALKLDFEIIPY--KRVDGRAPDSLKKIHPLGRSPIVEIEDKStgkkkMLIESGYIFQY 80
                78*****************9..556778889**************9963333557788888877776 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.6e-05     0.078       9      68 ..     152     210 ..     125     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
                 HHCCHCHHHCTTT---SS..CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHHH CS
     GST_C_2   9 eqldaaldaleahLadsp.flfGdqptlaDialapflvrlraagpgfdireaypnlraWle 68 
                  ++++ +d+le+++ +   +l  +++++aDi +   +  +  +g  f   e ypn ++Wl+
  CCD23667.1 152 GEVKNQFDFLESEIVKNKgYLVDGKLSAADILVSFPVEMAFLRG--FVTSEIYPNTKKWLD 210
                 578899******8888888*********************9999..688899*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1769.22
//
Query:       CCD23668.1  [L=353]
Description: hypothetical protein NDAI_0B06370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-13   50.8   0.0    8.6e-13   48.4   0.0    2.1  2  GST_N_2   Glutathione S-transferase, N-terminal domain
    5.6e-05   23.1   0.0    0.00012   22.0   0.0    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.036   14.5   0.0       0.15   12.5   0.0    2.0  2  GST_N_3   Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.4e-16   8.6e-13       2      69 ..      35     168 ..      34     169 .. 0.94
   2 ?   -0.7   0.0      0.31   1.8e+03      36      47 ..     315     343 ..     284     344 .. 0.67

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.4e-16
                 -HHHHHHHHHHHHCT--EEEEEE.H...-TTSHHHHH.............................................................. CS
     GST_N_2   2 CPwahRvlialalkglediisvv.vlepkgfekseef.............................................................. 37 
                 CP+a+R++i++alk+l+d+i v+ v++  ++++++ +                                                              
  CCD23668.1  35 CPYAQRIWITRALKNLTDVIGVSvVHWKLDEKTGWKLlnagetklgenafkidggilssqddtssplgdldesssrlfkdgtfdphygitqikelydmt 133
                 **********************779*********999************************************************************** PP

                 .HHHCTTTSSSEEE-CTTE..EEESHHHHHHHHHH CS
     GST_N_2  38 .prlnprgtVPvLwdkdgq..vineSseIlrylet 69 
                  +++++ +  P+Lwd +++  v+n   +I  +l++
  CCD23668.1 134 dKQYKGEFLWPILWDLKTKtiVNNNWDQIPAILNS 168
                 ***************86666899999988888876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.31
                 HH.................HHHCTTTSSS CS
     GST_N_2  36 ef.................prlnprgtVP 47 
                  f                  ++np+g VP
  CCD23668.1 315 AFgqttnfnhikllythamRNINPNGIVP 343
                 44555555555555555558999999999 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0     2e-08   0.00012      11      68 ..     225     307 ..     212     308 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2e-08
                 CCHCHHHCTTT--...................-SS.CTTCS--HHHHHHHHHHHHHHHHHHS-......---TT-HHHHHHHH CS
     GST_C_2  11 ldaaldaleahLa...................dspflfGdqptlaDialapflvrlraagpgf......direaypnlraWle 68 
                 +++++d++e+ L+                   ++ flfG+q+t  Di+l+++ +r + ++  +        r++y  ++ W++
  CCD23668.1 225 FFEDMDKIENKLRevhdtlakeygasngeeilKRFFLFGNQITESDIRLFVTMIRYDSIYAVHfklnyrLVRSDYYYIHLWMR 307
                 56666666666666666666777776666664444**********************99753346677666688888888876 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.5e-05      0.15       1      24 [.      29      52 ..      29      69 .. 0.81
   2 ?   -1.7   0.0      0.67     4e+03      37      48 ..     332     343 ..     322     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
                EES-TTSHHHHHHHHHHHHHT--E CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpv 24
                Ly + ++pya+r++++  +k+l  
  CCD23668.1 29 LYLSAGCPYAQRIWITRALKNLTD 52
                88899****************964 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.67
                 HHHHH-TT--SS CS
     GST_N_3  37 ellaknplgkvP 48 
                 +++++np+g vP
  CCD23668.1 332 AMRNINPNGIVP 343
                 7899*****999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2857.13
//
Query:       CCD23669.1  [L=1216]
Description: hypothetical protein NDAI_0B06380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-34  117.1   0.3    2.4e-33  115.2   0.3    2.1  1  Sir1            Regulatory protein Sir1
    0.00023   21.5   0.5    0.00069   19.9   0.5    1.8  1  Helicase_C      Helicase conserved C-terminal domain
  ------ inclusion threshold ------
       0.14   12.6   4.6       0.28   11.6   4.6    1.5  1  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> Sir1  Regulatory protein Sir1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.3   3.9e-37   2.4e-33       2     120 .]       6     125 ..       5     125 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.2 bits;  conditional E-value: 3.9e-37
        Sir1   2 isdryavidgFlVdtekkkkiinpktkklkkltkeerekleklklvdldelkk.ysksdlipvdskeLFelveteerefyetedgliivnkrtkkkkrk 99 
                 i+++++vid+FlV+ + + k i+++t ++k++ +++ +kl+ +++++l+elk+ y++++lip++sk+LF +v+t ++efy++ +g+++vn+rt k +r+
  CCD23669.1   6 IDKNHWVIDNFLVEENDGVKRIRHFTGTNKTMPQYTIDKLKLMNTINLKELKDaYPYTSLIPCQSKLLFAHVQTFTYEFYRKGEGFHKVNARTAKIFRN 104
                 99************************************************************************************************* PP

        Sir1 100 esievrvipirlkkkkvkYLy 120
                  s+ ++vip+ lk+++vkYLy
  CCD23669.1 105 ISSPFTVIPLILKGCPVKYLY 125
                 ********************9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.5   1.2e-07   0.00069       8     101 ..    1057    1147 ..    1051    1150 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.2e-07
                  HHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHH CS
  Helicase_C    8 ellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyi 101 
                  +l+ +++ ++ki+i++++ d ++ ++ +    g  +++++ ++  +er + +++f+ + +s++Li t+v+    ++++v lV  +d+ r++++yi
  CCD23669.1 1057 QLF-NSRTNKKIVIISKQADAADALHAM---LGDISIKITEKIDIRERFRLMDNFReQSNSKILIGTKVLLDFPNVENVALVLLMDYMRTISDYI 1147
                  555.78899***********99753333...35455578999**************556666********9999999999999999999999998 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.6   4.7e-05      0.28      12      46 ..     616     651 ..     604     693 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.7e-05
  CENP-B_dimeris  12 sesesdeeeeeee.edeededeeddedddevpvpsf 46 
                      + + deee ++  ++eed +e+ de++d++ vp +
      CCD23669.1 616 VDEDEDEEESNQLfDEEEDAEEDADENKDDIIVPPI 651
                     344444444444325566777778999999988853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.40
# Mc/sec: 9202.77
//
Query:       CCD23670.1  [L=1216]
Description: hypothetical protein NDAI_0C00100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-32  113.2   0.4    3.5e-32  111.4   0.4    2.0  1  Sir1            Regulatory protein Sir1
     0.0016   18.7   0.2     0.0048   17.2   0.2    1.8  1  Helicase_C      Helicase conserved C-terminal domain
  ------ inclusion threshold ------
       0.13   12.7   4.6       0.28   11.6   4.6    1.6  1  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> Sir1  Regulatory protein Sir1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.4   5.9e-36   3.5e-32       2     120 .]       6     125 ..       5     125 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 5.9e-36
        Sir1   2 isdryavidgFlVdtekkkkiinpktkklkkltkeerekleklklvdldelkk.ysksdlipvdskeLFelveteerefyetedgliivnkrtkkkkrk 99 
                 i+++++vid+FlV+ +++ k+i+++t++ ++l++++r+k++ +++++l++l   y+++++ip++sk++F++v+t ++efy++ +gl +vn+rt++++r+
  CCD23670.1   6 IDENHWVIDHFLVQERNGVKYIKHFTNSDRYLDQYRRHKVNLMNTINLKKLSSeYPNTSIIPCQSKLIFDHVQTFTYEFYRKGEGLFKVNARTPRRFRD 104
                 99************************************************************************************************* PP

        Sir1 100 esievrvipirlkkkkvkYLy 120
                  s+ ++vip+ +k  + kYLy
  CCD23670.1 105 ISSPFTVIPFFPKAGPAKYLY 125
                 ********************9 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2   8.1e-07    0.0048       8     101 ..    1057    1147 ..    1051    1150 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8.1e-07
                  HHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHH CS
  Helicase_C    8 ellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyi 101 
                  +l+ +++ ++ki+i++++ d ++ ++ +    g  +++++ ++  +er + ++ f+ + +s++Li t+v+    ++++v lV  +d+  ++++yi
  CCD23670.1 1057 QLF-NSRTNKKIVIISKQADAADALHAM---LGDISIKITEKIDIRERFRLMDTFReQPNSKILIGTKVLLDFPNVENVALVLLMDYMPTISDYI 1147
                  555.78899***********99753333...35455578999**************667778********8888888888888999988888887 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   4.6   4.7e-05      0.28      12      46 ..     616     651 ..     604     693 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.7e-05
  CENP-B_dimeris  12 sesesdeeeeeee.edeededeeddedddevpvpsf 46 
                      + + deee ++  ++eed +e+ de++d++ vp +
      CCD23670.1 616 VDEDEDEEESNQLfDEEEDAEEDADENKDDIIVPPI 651
                     344444444444325566777778999999988853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 8138.47
//
Query:       CCD23671.1  [L=192]
Description: hypothetical protein NDAI_0C00110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1424.89
//
Query:       CCD23672.1  [L=730]
Description: hypothetical protein NDAI_0C00120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-52  176.1   0.1      6e-52  175.3   0.1    1.4  1  Pan3_PK      Pan3 Pseudokinase domain
     0.0014   18.0   0.5      0.003   16.8   0.5    1.5  1  HIGH_NTase1  HIGH Nucleotidyl Transferase


Domain annotation for each model (and alignments):
>> Pan3_PK  Pan3 Pseudokinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.3   0.1   6.7e-56     6e-52       1     138 []     591     728 ..     591     728 .. 0.99

  Alignments for each domain:
  == domain 1  score: 175.3 bits;  conditional E-value: 6.7e-56
     Pan3_PK   1 ieellkaiaerlleeldsaleesdlleselskelengrlvrlllklgfinerpefekdkkwsetgdryllkLFrdyvFhqvdeegkpvldlahvlscLn 99 
                 i+el + + +++l++l+s + +++++e++lskelen+rl+rl++kl+fi  r e + d +wse+g+++ + LF dyvFhq+d++gkp++dl+hvl+cLn
  CCD23672.1 591 IKELSQLFIDKILSNLESFQGYAEFTEATLSKELENARLFRLICKLNFIFGRIESRIDINWSESGEKFPIILFYDYVFHQLDSNGKPIMDLTHVLRCLN 689
                 6899999******************************************************************************************** PP

     Pan3_PK 100 klDagveekilLvsrdeqsvlvvsYkelkkllesafeeL 138
                 klDag++eki+Lv+ de +++v++Ykel++l++s+f++L
  CCD23672.1 690 KLDAGIQEKIVLVTPDELNCIVITYKELRDLIDSTFRSL 728
                 ************************************987 PP

>> HIGH_NTase1  HIGH Nucleotidyl Transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.5   3.4e-07     0.003     244     313 ..     569     636 ..     529     646 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3.4e-07
  HIGH_NTase1 244 lsledlskllkykllteskeelkkildvsegLenrikkalkkaesleelleklktKrytytriqRillhi 313
                     ++++++lky l +++k+  k+i ++s+ + ++i ++l++++ ++e++e++ +K++  +r+ R+++++
   CCD23672.1 569 NVDDQFKTVLKYLLDKSNKN--KNIKELSQLFIDKILSNLESFQGYAEFTEATLSKELENARLFRLICKL 636
                  34678999999999888876..9*******************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 5206.99
//
Query:       CCD23673.1  [L=252]
Description: hypothetical protein NDAI_0C00130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-45  155.4   0.2    1.5e-45  155.1   0.2    1.1  1  adh_short        short chain dehydrogenase
    1.6e-28   99.8   0.1      2e-28   99.6   0.1    1.0  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    1.7e-09   37.8   0.0    2.5e-09   37.3   0.0    1.2  1  KR               KR domain
     0.0022   17.5   0.1     0.0035   16.9   0.1    1.6  1  Epimerase        NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.024   14.9   0.1      0.051   13.8   0.1    1.5  1  TrkA_N           TrkA-N domain
      0.044   12.9   0.0      0.067   12.3   0.0    1.4  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
        0.1   12.2   0.3        1.9    8.0   0.0    2.2  2  DUF4848          Domain of unknown function (DUF4848)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.1   0.2   5.8e-49   1.5e-45       1     193 [.       3     192 ..       3     194 .. 0.92

  Alignments for each domain:
  == domain 1  score: 155.1 bits;  conditional E-value: 5.8e-49
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEE..EESCHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---S.S--SSGGG CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvv..vdrseekleevakelkee.gakalaiqvDvtdreevealvekavkklgkldvLvnNAGi.tgsgpfse 95 
                 k+++vtG s+GIGr i+++ ++   + +v  v+rse +l    kelke+ g++++++ +D+td++ +++lv++a++  gk+d +v+NAG+ + ++++++
  CCD23673.1   3 KIIIVTGVSRGIGRSIVDKTIELSDDSIVfgVARSETPL----KELKEKyGDRFHYAVGDITDENVINKLVKDAIATGGKIDSVVANAGVlEPVQDVNN 97 
                 79******************9977666663677887777....5555555678*************************************9999***** PP

                 CSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHHHHCTH CS
   adh_short  96 lseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmakelrek 193
                 ++ ++w+r++++N+++v+ lt a lp+ lk+ +G+I++vsS a+  ++ ++ aYsAsKa ++ +++++ +e     +++ +vaPG+vdT m+ ++re+
  CCD23673.1  98 IDVNAWKRLFDINFFSVVALTSATLPY-LKKTNGNIIFVSSDASDTHFSSWGAYSASKACINRFAMTVGHEEPA--VKCLSVAPGIVDTSMQVNIREN 192
                 ***************************.66****************************************9877..9****************99986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.1   7.7e-32     2e-28       1     210 [.       9     223 ..       9     241 .. 0.85

  Alignments for each domain:
  == domain 1  score: 99.6 bits;  conditional E-value: 7.7e-32
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEE..EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaev..lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreef 95 
                   G+ +gIGr i+ +  e   + ++  + +++   ++el+e++g ++     D+tde+ +++lv+++ ++ gk+D +v nag+ ++  +++ +++ + +
    CCD23673.1   9 GVSRGIGRSIVDKTIELSDDSIVFGVARSE-TPLKELKEKYGDRFhyAVGDITDENVINKLVKDAIATGGKIDSVVANAGVLEP-VQDVNNIDVNAW 103
                   899********9999988887777777776.78*********9966699***********************************.9*********** PP

                   HHHHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHH CS
  adh_short_C2  96 draldvnlyslfllakaalplmkeg.gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdellee 191
                   +r +d+n+ s+++l+ a lp++k++ g+i+ +ss ++   +++  ay+a+Ka ++ ++ ++ +e  +  +++ +v+pg+++T ++ +i+++      
    CCD23673.1 104 KRLFDINFFSVVALTSATLPYLKKTnGNIIFVSSDASDTHFSSWGAYSASKACINRFAMTVGHEEPA--VKCLSVAPGIVDTSMQVNIRENVGTSMS 198
                   ********************777766*******************************9999998665..****************999986555555 PP

                   HHHHST......TSS-B-HHHHHHH CS
  adh_short_C2 192 learap......lgrlgtpeevaea 210
                   +e++++       ++l++ e+va +
    CCD23673.1 199 AEHHQMfkdlkeTNKLASSEDVATV 223
                   5555540011114445555555555 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   9.7e-13   2.5e-09       4     162 ..       6     163 ..       4     182 .. 0.90

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 9.7e-13
                 EEETTTSHHHHHHHHHHHHHHS-EEEE.E-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------.---TTT CS
          KR   4 litGGlGgLGlelarwlaekgarhlvl.lsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr.dkllee 99 
                 ++tG   g+G+++++  +e    ++v+ ++Rs       ++ ++el+++ g + +++  D++d++ +++l++++ a++++i  v+  Agvl+  + +++
  CCD23673.1   6 IVTGVSRGIGRSIVDKTIELSDDSIVFgVARS-------ETPLKELKEKyGDRFHYAVGDITDENVINKLVKDAIATGGKIDSVVANAGVLEpVQDVNN 97 
                 89*******************99999834455.......56788898877*****************************************96689*** PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR 100 mtaedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                  + +++++++   +  +  L  ++ +   ++   ++++SS a+ +     ++Y+a  a+++ +a +
  CCD23673.1  98 IDVNAWKRLFDINFFSVVALTSATLPylkKTNGNIIFVSSDASDTHFSSWGAYSASKACINRFAMT 163
                 ***********************99888788899***************************99976 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.4e-06    0.0035       1     156 [.       5     164 ..       5     230 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.4e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.....EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.....elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqg 94 
                 i+VtG++  iG+ +v++  e   + i++   +s+ + ++l+++     +   +d+td++ +++l+k    da+   + + +v a++   + + + n ++
  CCD23673.1   5 IIVTGVSRGIGRSIVDKTIELSDDSIVFGVARSETPLKELKEKygdrfHYAVGDITDENVINKLVK----DAIATGGKIDSVVANAGVLEPVQDVN-NI 98 
                 89********************77555555555666666666668*7777789******9999999....55555544555555555544433333.55 PP

                 HHHHHHHHHHHTCTEEEEEEE.GGGGTSCSS...SSBSTCSTTS----SSHHHHHHHHHHHHHHHH CS
   Epimerase  95 tlnlleaarkagvkrllflsS.sevYGkdae...qpkeettltgplkpnspYaaaKlageklveay 156
                  +n  + +++ +   ++ l S +  Y k+++   +  ++++ ++++ +  +Y+a+K+++ + +  +
  CCD23673.1  99 DVNAWKRLFDINFFSVVALTSaTLPYLKKTNgniIFVSSDASDTHFSSWGAYSASKACINRFAMTV 164
                 666666666666665555555233344444444223444444556677777777777777666555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1     2e-05     0.051       1      57 [.       5      67 ..       5      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2e-05
                EEEES-SH.HHHHHHHHHHH.TT..EEEEEEESSHHHHHHHHHTT...SEEEES-TTSHHHHHH CS
      TrkA_N  1 iiiiGlGr.vGrslaeeLse.gg..kdvvvidkdeerveelreeg...levvvgdatdeevLee 57
                ii+ G++r +Grs++++  e +   + v ++ ++e  ++el+e+    +++ vgd tde+v+ +
  CCD23673.1  5 IIVTGVSRgIGRSIVDKTIElSDdsI-VFGVARSETPLKELKEKYgdrFHYAVGDITDENVINK 67
                67778777699999998877554645.9**************99989999**********9887 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.6e-05     0.067       1      76 [.       5      72 ..       5     177 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
                     EEEETTTSHHHHHHHHHHHHHB-SEEEE.EES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT.. CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkkkpkkiil.lerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel 76
                     ++vtG +  iG+++v++ ++ +  +i+  + r+E+ l e+++++      +++++     +gd++d++ ++k++++ 
       CCD23673.1  5 IIVTGVSRGIGRSIVDKTIELSDDSIVFgVARSETPLKELKEKYG-----DRFHYA----VGDITDENVINKLVKDA 72
                     79*******************8888776489**********9983.....445445....9******9999988853 PP

>> DUF4848  Domain of unknown function (DUF4848)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00073       1.9      71     106 ..      38      73 ..      18     132 .. 0.85
   2 ?    2.4   0.0     0.038        96     105     136 ..     182     213 ..     179     243 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00073
                 HHHHHHHHHHHTTTSB--SS-TT----B--BSSGGG CS
     DUF4848  71 delieeykdkYdDvfmfntvDatDlipyyklkdsal 106
                 ++ ++e k+kY+D f +   D tD     kl++ a 
  CCD23673.1  38 ETPLKELKEKYGDRFHYAVGDITDENVINKLVKDAI 73 
                 556899******************999888887765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.038
                 GGGGT--TTSEEEETTEEEE--B-SSHHHHH- CS
     DUF4848 105 alsllvnikGvfliGdslvdapvYkdleefqs 136
                 + s+ vni+  +    s  +++++kdl+e ++
  CCD23673.1 182 DTSMQVNIRENVGTSMSAEHHQMFKDLKETNK 213
                 67888999999877777799*********443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1782.69
//
Query:       CCD23674.1  [L=212]
Description: hypothetical protein NDAI_0C00140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-48  163.8   0.0    3.5e-48  163.5   0.0    1.1  1  ADK              Adenylate kinase
    1.4e-38  132.4   0.0    1.9e-38  132.0   0.0    1.2  1  AAA_17           AAA domain
    6.2e-10   39.7   0.0    9.3e-10   39.1   0.0    1.3  1  AAA_18           AAA domain
    6.4e-06   26.0   0.3      0.027   14.1   0.0    2.1  2  Thymidylate_kin  Thymidylate kinase
    5.1e-05   23.5   0.0    0.00016   21.9   0.0    1.7  1  AAA_33           AAA domain
     0.0073   15.6   0.0      0.013   14.8   0.0    1.5  1  Zeta_toxin       Zeta toxin
  ------ inclusion threshold ------
      0.039   13.6   0.0      0.047   13.3   0.0    1.4  1  SRP54            SRP54-type protein, GTPase domain
      0.072   13.0   0.0       0.12   12.2   0.0    1.4  1  Ploopntkinase3   P-loop Nucleotide Kinase3


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   0.0   1.6e-51   3.5e-48       1     150 [.      25     183 ..      25     184 .. 0.95

  Alignments for each domain:
  == domain 1  score: 163.5 bits;  conditional E-value: 1.6e-51
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH.HCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCH...GTTTEEEEESB-SSHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdllRaev.ksgtelGkeakevmdkgelvpdevvvklvkeeleke...dkkkgfllDGfPRtveqaealeel 95 
                 +lG+PgaGKGtq++klv++yg++hls+GdllRae+ ++g+e+G+ +k+++++g +vp+e++++l+k++++++   + +k+fl+DGfPR+++qa ++ee 
  CCD23674.1  25 VLGGPGAGKGTQCAKLVEDYGFVHLSAGDLLRAEQaREGSEYGTLIKHYIKEGLIVPQEITLALLKNAIQEHynnKGAKNFLIDGFPRKMDQAISFEE- 122
                 79******************************9985789******************************98754355689******************. PP

                 HHHHTSEESEEEEEE--HHHHHHHHHT.........GSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  96 leeekvkldlvleldvpeevlveRltg.........DneetvkkRletykkqtkplidyykkkg 150
                    +++  ++ l +d+pe+v++eRl++         Dn e++kkR++t+ ++++p+++y++k++
  CCD23674.1 123 ---QIAPSKFTLFFDCPENVMLERLLErgktsgrvdDNIESIKKRFKTFVETSMPVVNYFDKQS 183
                 ...899******************************************************9986 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.0   8.3e-42   1.9e-38       1     136 []      26     162 ..      26     162 .. 0.81

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 8.3e-42
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTT...SHSSHHHHC...TSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrgg...lakardemr...klpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglp 93 
                 lGgPG+GKgtqc+klve+ygf hlsaGdllr+e++r+g       +++++    +p+e++ +l+k+a+++  ++++ k++l+dg+pr     ++   ++
  CCD23674.1  26 LGGPGAGKGTQCAKLVEDYGFVHLSAGDLLRAEQAREGseyGTLIKHYIKeglIVPQEITLALLKNAIQEHYNNKGAKNFLIDGFPRKM---DQAISFE 121
                 7***********************************98444245566666333578888888888888888888899*********953...3344566 PP

                 HHHHHHH..SEEEE.EE--HHHHHHHHHHH.TTST-TS-SHHHHH CS
      AAA_17  94 kevleelkpdaiil.leadpeeilerrlkd.rtrgrdddneesik 136
                     e++ p++++l +++++ ++ler+l++ +t+gr ddn+esik
  CCD23674.1 122 ----EQIAPSKFTLfFDCPENVMLERLLERgKTSGRVDDNIESIK 162
                 ....5778877777366667799999999999***********97 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   4.2e-13   9.3e-10       1     125 [.      23     159 ..      23     164 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.1 bits;  conditional E-value: 4.2e-13
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpe.....aldeskrldedkldklldaleenssaleegknlvidghlaeleseaakd 93 
                 I++ G pG+GK t +  L +  gf +   +d+++ ++ +++ +        ++e +++ ++ + +ll++  +   ++  +kn +idg++ ++ ++  ++
  CCD23674.1  23 IFVLGGPGAGKGTQCAKLVEDYGFvHLSAGDLLRAEQAREGSEYGtlikhYIKEGLIVPQEITLALLKNAIQEHYNNKGAKNFLIDGFPRKMDQAISFE 121
                 89******************9999*7777777777777777777777779************99998887777668999**********9997776665 PP

      AAA_18  94 ikk......vvLtaspeelleRlekRgyeeakikenee 125
                  +        + +++++++leRl +Rg+++ +  +n e
  CCD23674.1 122 EQIapskftLFFDCPENVMLERLLERGKTSGRVDDNIE 159
                 55577888999*********************998877 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.2e-05     0.027       4      72 ..      28      99 ..      26     106 .. 0.87
   2 !   10.2   0.1   0.00019      0.43     119     181 ..     128     197 ..     108     201 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
                     STTSSHHHHHHHHHHHHHHTTE...EEEESSS..TTSHHHHHHHHHHHTCS---HHHHHHHHHHHHHHTTHHH CS
  Thymidylate_kin  4 lDGaGKttqaellkerlkeegik..vvltrep..ggteiGekirelllkeeeleeqteallfaadriehleek 72
                       GaGK tq+++l+e +   +++   +l+ e+  +g+e+G +i+++++ e  + +q + l ++++ i++++++
       CCD23674.1 28 GPGAGKGTQCAKLVEDYGFVHLSagDLLRAEQarEGSEYGTLIKHYIK-EGLIVPQEITLALLKNAIQEHYNN 99
                     569*************99999988778888864469************.99999**99999999999998864 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00019
                      SEEEEEESSHHHHHTSCCTTSS....TTTSHHHHHHHHHHHHHHHHHHHH.TTSTEEEEET..TS-HHHH CS
  Thymidylate_kin 119 dltflldvdpevalkRlakrde....ldeeeeeqldflrkvrerylelak.ederiliida..sksieev 181
                       +t+++d++++v l+Rl +r++     d+++e  ++ ++++ e  + +++ +d++ +++++   +++e+v
       CCD23674.1 128 KFTLFFDCPENVMLERLLERGKtsgrVDDNIESIKKRFKTFVETSMPVVNyFDKQSKVVKIrcDEPVEKV 197
                      579******************9888745555555566666666677777766666666543115556666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   7.1e-08   0.00016       1     138 [.      22     163 ..      22     171 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 7.1e-08
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrrrlfg.tdqqskt............dytrvldr.lyqilnelarkal..sagrnvildatnlsrr 83 
                 ++++ G pG+GK t   +l++  g+v+ls  +l+r+  + ++ +  t                  ++ + + l++ +++    + ++n+++d    ++r
  CCD23674.1  22 VIFVLGGPGAGKGTQCAKLVEDYGFVHLSAGDLLRAEQArEGSEYGTlikhyikeglivP-----QEiTLALLKNAIQEHYnnKGAKNFLIDG---FPR 112
                 7999**************************999997776233333334443332222211.....2233344444444433112334456664...599 PP

      AAA_33  84 erarflklarrlgvpvrivvvetdeetlkeRlakRaang...ddrsevpeealdrqka 138
                 ++++ +++ +++      ++++++e ++ eRl +R +++   dd +e         k+
  CCD23674.1 113 KMDQAISFEEQIAPSKFTLFFDCPENVMLERLLERGKTSgrvDDNIES-------IKK 163
                 999999999999988889******************997433333333.......333 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.8e-06     0.013      11     154 ..      15     155 ..       5     202 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.8e-06
  Zeta_toxin  11 psqerPklillgGqpGAGKselaellkdelerqgnvvrldp.DdlRelh....Peyeeilkadpkkaseltqkdaselvekllqeaieng..yniiveg 102
                  s ++  +i++ G+pGAGK++  ++l ++     ++v+l++ D lR+       ey  ++k++ k+  ++ q+ +  l ++++qe ++n+   n++++g
  CCD23674.1  15 FSADQISVIFVLGGPGAGKGTQCAKLVEDY----GFVHLSAgDLLRAEQaregSEYGTLIKHYIKEGLIVPQEITLALLKNAIQEHYNNKgaKNFLIDG 109
                 55566678999********99888888886....78888752666755411113677788888888888888888888999988888887556999999 PP

  Zeta_toxin 103 tlrspdvvkklaealkkaGYevevvvvavkkelSrlgvldRyeeevaegRlv 154
                   r+ d++  + e+++   ++   ++  +++++  +++l+R +++   gR+ 
  CCD23674.1 110 FPRKMDQAISFEEQIAPSKFT---LFFDCPENVMLERLLERGKTS---GRVD 155
                 999999999888888874443...456777777777777777777...5554 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.1e-05     0.047       2      79 ..      21      96 ..      20     186 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.1e-05
                EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEE...SSTTSCHHHHHHHHHHHH CS
       SRP54  2 nvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvik...kkeeadpaavakeaveka 79
                +vi ++G  GaGK t +aKL + +      v l a D  Ra  +   +++++ ++ ++ik      ++ + a++k+a+++ 
  CCD23674.1 21 SVIFVLGGPGAGKGTQCAKLVEDY----GFVHLSAGDLLRAEQAREGSEYGTLIK-HYIKeglIVPQEITLALLKNAIQEH 96
                68999***************9655....468889999999887777777777777.5555344344455555566666544 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.5e-05      0.12       5      33 ..      22      50 ..      19      75 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
  Ploopntkinase3  5 liylvGqPGaGkstlmaeltkgfdrskve 33
                    +i+++G PGaGk t  a+l + +   +++
      CCD23674.1 22 VIFVLGGPGAGKGTQCAKLVEDYGFVHLS 50
                    79*****************9998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1622.99
//
Query:       CCD23675.1  [L=103]
Description: hypothetical protein NDAI_0C00145 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0042   17.1   0.2      0.006   16.6   0.2    1.3  1  UPF0302        UPF0302 domain
     0.0056   16.7   0.3     0.0075   16.3   0.3    1.2  1  ETRAMP         Malarial early transcribed membrane protein (E
  ------ inclusion threshold ------
      0.039   12.8   0.9      0.036   12.9   0.9    1.0  1  HCO3_cotransp  HCO3- transporter family
      0.045   13.8   0.1      0.055   13.5   0.1    1.1  1  DUF1676        Protein of unknown function (DUF1676)
      0.067   13.5   0.1      0.083   13.2   0.1    1.1  1  Orf78          Orf78 (ac78)
      0.072   13.1   0.0       0.09   12.8   0.0    1.1  1  Consortin_C    Consortin C-terminus


Domain annotation for each model (and alignments):
>> UPF0302  UPF0302 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2     2e-06     0.006      37      80 ..       9      54 ..       6      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2e-06
                EEE-S-GGG..STTEEEEEBSSS-S-SEEEEESS-EE--HHHHHHH CS
     UPF0302 37 vhFvekark..aprallisakgvetepfrfrkenkvttdvekafhd 80
                + F++++++  + ++l isak ++t  f ++ +n+ t + ek+fh 
  CCD23675.1  9 IVFISHKTGflKRHSLNISAKRFSTYTFLCYEQNNSTSNNEKSFHT 54
                556666665224678*****************************96 PP

>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.3   2.5e-06    0.0075      21      73 ..      34      86 ..      27      95 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.5e-06
      ETRAMP 21 peslcdevnkkkekakkaikk.iddkiekkkkkkKliiistiatalallvasal 73
                   lc+e+n+++ +++k++      +iekk k++K+   s++  +l l++++++
  CCD23675.1 34 YTFLCYEQNNSTSNNEKSFHTrQSSNIEKKSKQNKNTKTSLLLLGL-LAIGTTF 86
                56789999999988888887615689*********99999999998.6665554 PP

>> HCO3_cotransp  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.9   1.2e-05     0.036     205     273 ..      37     102 ..       1     103 [] 0.54

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-05
  HCO3_cotransp 205 lekseekselswsslltkkecteelkgelvgkecelvpdvallsliLflgtfllalfLkkfkksrflpt 273
                    l  ++++s+++ +++ +++   ++++ e ++k++++++ ++ll  +L++gt +++++  k   +++l++
     CCD23675.1  37 LCYEQNNSTSNNEKSFHTR---QSSNIEKKSKQNKNTKTSLLLLGLLAIGTTFISISYSKGEPEEYLEK 102
                    2222222222222222222...22222333344456888999999************999999999875 PP

>> DUF1676  Protein of unknown function (DUF1676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.8e-05     0.055      76     134 ..      17      82 ..      10      91 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
     DUF1676  76 rflkshslevklpeeldaegaeesisrsleedne..egR.....kkkkkkkklkkmllplllalkl 134
                  flk hsl+++ +++++  +   ++++s++++++  + R      kk k++k  k  l ll +l++
  CCD23675.1  17 GFLKRHSLNISAKRFSTYTFLCYEQNNSTSNNEKsfHTRqssniEKKSKQNKNTKTSLLLLGLLAI 82 
                 69*************886665544444444433356777777774554555555544444444433 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.8e-05     0.083      29      77 ..      40      86 ..      28      91 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
       Orf78 29 ddndkaenkkekksaaeknditekesnaaekaqalnillisllavvcvl 77
                ++n++++n++++ +++++++i++k+++  +k++++++ll++lla+ + +
  CCD23675.1 40 EQNNSTSNNEKSFHTRQSSNIEKKSKQ--NKNTKTSLLLLGLLAIGTTF 86
                456666666666666777777766666..88889999999999986655 PP

>> Consortin_C  Consortin C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0     3e-05      0.09      24      71 ..      42      89 ..      19      92 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3e-05
  Consortin_C 24 eeaqsekksskrkvrfkepddtldqdevggdscllllllclvtvvisv 71
                 ++++s++++s    + ++++++  q++ +  s lll ll + t +is+
   CCD23675.1 42 NNSTSNNEKSFHTRQSSNIEKKSKQNKNTKTSLLLLGLLAIGTTFISI 89
                 333333333333344567888999***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2110  (0.117686); expected 358.6 (0.02)
Passed bias filter:                      839  (0.0467957); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.29s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 743.09
//
Query:       CCD23676.1  [L=441]
Description: hypothetical protein NDAI_0C00150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1995  (0.111272); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 2973.06
//
Query:       CCD23677.1  [L=778]
Description: hypothetical protein NDAI_0C00160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-35  119.5   5.1    1.1e-05   25.0   0.1    9.5  9  TPR_1         Tetratricopeptide repeat
      2e-32  108.6   3.6    0.00077   19.4   0.0    9.9  9  TPR_2         Tetratricopeptide repeat
    9.1e-24   83.5   9.4      4e-21   75.0   0.1    5.0  6  ANAPC3        Anaphase-promoting complex, cyclosome, subunit 
    1.6e-23   80.9  13.7     0.0004   20.4   0.0    9.3 10  TPR_8         Tetratricopeptide repeat
      1e-17   64.4   0.0    0.00032   21.1   0.0    6.1  5  TPR_19        Tetratricopeptide repeat
    7.3e-15   54.4   0.0      0.042   14.7   0.0    8.5  9  TPR_14        Tetratricopeptide repeat
    1.1e-14   53.9   3.8    6.5e-06   25.7   0.0    7.1  8  TPR_11        TPR repeat
    1.1e-14   54.4   4.0    9.1e-06   25.9   0.2    7.7  8  TPR_12        Tetratricopeptide repeat
    9.9e-13   48.5   0.0    0.00037   21.1   0.0    5.7  5  TPR_16        Tetratricopeptide repeat
    1.2e-12   46.9   5.5    0.00017   21.4   0.0    7.2  7  TPR_7         Tetratricopeptide repeat
    5.5e-12   45.2   6.3      0.059   13.8   0.0    8.3  9  TPR_17        Tetratricopeptide repeat
    2.4e-10   40.4   2.5        1.3    9.8   0.0    8.1  8  TPR_6         Tetratricopeptide repeat
    3.2e-08   33.2   0.7       0.21   11.5   0.0    5.3  4  TPR_10        Tetratricopeptide repeat
    1.4e-05   24.6   0.0      0.049   13.0   0.0    4.2  4  TPR_MalT      MalT-like TPR region
    0.00023   20.5   0.7        0.5    9.5   0.1    4.0  4  TPR_15        Tetratricopeptide repeat
     0.0019   18.3   0.0      0.024   14.8   0.0    3.0  2  TPR_9         Tetratricopeptide repeat
     0.0036   17.3   5.8        5.6    7.0   0.0    3.9  3  SRP_TPR_like  Putative TPR-like repeat
  ------ inclusion threshold ------
      0.045   14.3   0.2         12    6.6   0.0    3.4  3  DUF4810       Domain of unknown function (DUF4810)
      0.055   13.5  10.1        0.8    9.8   0.3    5.3  5  Fis1_TPR_C    Fis1 C-terminal tetratricopeptide repeat
      0.076   13.4   0.1        6.1    7.2   0.1    3.2  3  TPR_20        Tetratricopeptide repeat
       0.16   11.5  11.8       0.19   11.2   2.7    3.4  3  SPO22         Meiosis protein SPO22/ZIP4 like
       0.42   10.6   3.3          1    9.3   3.3    1.6  1  DUF3439       Domain of unknown function (DUF3439)
        1.3    8.7   5.7        2.5    7.8   1.5    3.3  5  RPN7          26S proteasome subunit RPN7


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.57   4.5e+02       7      25 ..     236     254 ..     234     255 .. 0.84
   2 !   11.8   0.0   0.00021      0.16       4      22 ..     266     284 ..     263     284 .. 0.91
   3 !   10.3   0.0   0.00061      0.48       4      31 ..     321     348 ..     318     351 .. 0.90
   4 ?    3.8   0.2     0.071        55      16      29 ..     437     450 ..     437     450 .. 0.94
   5 !   13.9   0.0   4.7e-05     0.036       1      34 []     490     523 ..     490     523 .. 0.93
   6 !    6.8   0.0    0.0078       6.1       8      27 ..     531     550 ..     524     556 .. 0.83
   7 !   16.5   0.1     7e-06    0.0054       3      29 ..     594     620 ..     592     621 .. 0.94
   8 !   21.2   0.0   2.2e-07   0.00017       5      29 ..     637     661 ..     634     665 .. 0.93
   9 !   25.0   0.1   1.5e-08   1.1e-05       1      34 []     667     700 ..     667     700 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.57
                 HHHHHHHTT-HHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyye 25 
                 l+++++++g y  A+e  +
  CCD23677.1 236 LAQVFYNNGSYLRAIELLS 254
                 899999***9999999776 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00021
                 HHHHHHHHHHTT-HHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAle 22 
                  y +G+++fkl+++d+Al+
  CCD23677.1 266 RYLMGLCLFKLERFDDALD 284
                 699**************96 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00061
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALeln 31 
                 ++ +G ++++++++ +A +  + A+ ++
  CCD23677.1 321 CFLRGKIFLSQNNFTKAKQSLKDAILID 348
                 6789********************9987 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.071
                 -HHHHHHHHHHHHH CS
       TPR_1  16 kydeAleyyekALe 29 
                 k++e+le +e+ALe
  CCD23677.1 437 KFNECLELCERALE 450
                 799**********8 PP

  == domain 5  score: 13.9 bits;  conditional E-value: 4.7e-05
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a +++  +  y++l++   A +y++kA  l+P++
  CCD23677.1 490 AITWFSVATYYMSLNNIPMARKYFSKASILDPTF 523
                 568999999***********************86 PP

  == domain 6  score: 6.8 bits;  conditional E-value: 0.0078
                 HHHHHHTT-HHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekA 27 
                 ++++   g++d+A+ +y+ A
  CCD23677.1 531 AHTFALEGEHDQAISAYSTA 550
                 789999***********998 PP

  == domain 7  score: 16.5 bits;  conditional E-value: 7e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALe 29 
                  l+ +G++yfk++++ +  +y +kALe
  CCD23677.1 594 LLNEMGVLYFKKNELSKSKKYLKKALE 620
                 6899**********************8 PP

  == domain 8  score: 21.2 bits;  conditional E-value: 2.2e-07
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALe 29 
                  nl+++y+klg+ + A+++++ +Le
  CCD23677.1 637 MNLAHTYRKLGENERAIKCFKAVLE 661
                 7*********************998 PP

  == domain 9  score: 25.0 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a++++ lG +y+k +++++A++y    L+l P+n
  CCD23677.1 667 ADIYCSLGFLYLKTNQLEKAVDYLHNSLSLKPTN 700
                 799*****************************98 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.035        28       5      25 ..     234     254 ..     230     255 .. 0.90
   2 !    7.7   0.0    0.0053       4.1       5      22 ..     267     284 ..     263     285 .. 0.90
   3 !   10.4   0.0   0.00073      0.57       3      31 ..     320     348 ..     318     351 .. 0.92
   4 ?    4.6   0.1     0.056        43      12      31 ..     433     452 ..     431     455 .. 0.84
   5 !   14.6   0.0   3.4e-05     0.026       1      33 [.     490     522 ..     490     523 .. 0.94
   6 ?    3.5   0.0      0.12        95       7      32 ..     530     555 ..     524     557 .. 0.80
   7 !   14.9   0.0   2.7e-05     0.021       2      29 ..     593     620 ..     592     622 .. 0.94
   8 !   17.7   0.0   3.4e-06    0.0027       4      30 ..     636     662 ..     633     666 .. 0.90
   9 !   19.4   0.0   9.9e-07   0.00077       1      34 []     667     700 ..     667     700 .. 0.96

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.035
       TPR_2   5 ynlGlayyklgdyeeAleafe 25 
                 ++l+++ y++g y +A+e++ 
  CCD23677.1 234 FWLAQVFYNNGSYLRAIELLS 254
                 89***************9986 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0053
       TPR_2   5 ynlGlayyklgdyeeAle 22 
                 y +Gl+++kl ++++Al+
  CCD23677.1 267 YLMGLCLFKLERFDDALD 284
                 89**************85 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00073
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 +++ +G++ + ++++ +A++ ++ A+ +d
  CCD23677.1 320 LCFLRGKIFLSQNNFTKAKQSLKDAILID 348
                 689**********************9887 PP

  == domain 4  score: 4.6 bits;  conditional E-value: 0.056
       TPR_2  12 yklgdyeeAleafekAleld 31 
                 + + +++e+le++e+Ale d
  CCD23677.1 433 FIQWKFNECLELCERALEDD 452
                 56789************966 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 3.4e-05
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a  ++  +  y+ l++   A+++f kA  ldP+
  CCD23677.1 490 AITWFSVATYYMSLNNIPMARKYFSKASILDPT 522
                 5689999*************************8 PP

  == domain 6  score: 3.5 bits;  conditional E-value: 0.12
       TPR_2   7 lGlayyklgdyeeAleafekAleldP 32 
                  +   +  g++++A+ a+  A +  P
  CCD23677.1 530 FAHTFALEGEHDQAISAYSTASRFFP 555
                 56777889***********9988777 PP

  == domain 7  score: 14.9 bits;  conditional E-value: 2.7e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                  +l+++G +y+k++++ + +++++kAle
  CCD23677.1 593 LLLNEMGVLYFKKNELSKSKKYLKKALE 620
                 5799***********************8 PP

  == domain 8  score: 17.7 bits;  conditional E-value: 3.4e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAlel 30 
                  +nl+  y+klg+ e+A+++f+++le 
  CCD23677.1 636 QMNLAHTYRKLGENERAIKCFKAVLEE 662
                 579**********************96 PP

  == domain 9  score: 19.4 bits;  conditional E-value: 9.9e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 a++++ lG +y+k +++e+A++++  +l+l P+n
  CCD23677.1 667 ADIYCSLGFLYLKTNQLEKAVDYLHNSLSLKPTN 700
                 68999***************************98 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.1   5.1e-24     4e-21       1      81 [.     209     288 ..     209     289 .. 0.97
   2 ?   -1.0   0.0       2.8   2.2e+03      27      49 ..     322     344 ..     317     355 .. 0.76
   3 ?    0.2   0.0       1.1     9e+02      36      70 ..     435     470 ..     431     475 .. 0.81
   4 ?   -0.2   0.0       1.5   1.2e+03      10      79 ..     476     547 ..     471     550 .. 0.65
   5 !    7.6   0.8    0.0058       4.5      29      80 ..     639     691 ..     610     693 .. 0.71
   6 !    7.8   0.3    0.0048       3.8       6      61 ..     650     706 ..     647     712 .. 0.83

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 5.1e-24
                 HTT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   1 dqnnyknAiflaerllaaetespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 +q++y++A+ ++++++ + t +p+da++lA+++y+ng y rA+ell+k   + ++  cryl++ cl+kL+++++A+++ ++
  CCD23677.1 209 MQHMYRTAEYIGNKIY-TITADPNDAFWLAQVFYNNGSYLRAIELLSKDSYATSNVICRYLMGLCLFKLERFDDALDIVGE 288
                 79**************.********************************8899999*********************9986 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.8
                 HHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  27 yllAlclylngqykrAyellrka 49 
                 +l ++ +++++++++A + l++a
  CCD23677.1 322 FLRGKIFLSQNNFTKAKQSLKDA 344
                 344889999*******9999887 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.1
                 TT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT CS
      ANAPC3  36 ngqykrAyellrka.klnskslgcrylfAqcllkLk 70 
                 + ++++++el+++a + ++ ++ ++ ++  cl++L+
  CCD23677.1 435 QWKFNECLELCERAlEDDEFNPTVLPIYLSCLFELG 470
                 558899999999998888888888888888888885 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 1.5
                 HHHHHHH.HHH--HHHHHHH..HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHT.T-HHHHHHHH CS
      ANAPC3  10 flaerllaaetespedayll..AlclylngqykrAyellrka.klnskslgcrylfAqcllkL.kkyeeAiaaL 79 
                 fl++  l ae+    ++ ++  A  + ++++   A ++++ka  l+++   +++ fA++  +L +++++Ai+a+
  CCD23677.1 476 FLISHNL-AENFPKWAITWFsvATYYMSLNNIPMARKYFSKAsILDPTFSSAWLGFAHTF-ALeGEHDQAISAY 547
                 5555555.5555555666655588888888888888888888677777677777777764.4447788887776 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.0058
                 HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  29 lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 lA ++ ++g+ +rA++ ++   ++ +++  +   ++  +lk +++e+A++ L 
  CCD23677.1 639 LAHTYRKLGENERAIKCFKAVlEESGHDADIYCSLGFLYLKTNQLEKAVDYLH 691
                 79999999999999999999944444444555556677789999999988875 PP

  == domain 6  score: 7.8 bits;  conditional E-value: 0.0048
                 HHHHHHHHHHH.HHH--HHHHHH.HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHH CS
      ANAPC3   6 knAiflaerllaaetespedayl.lAlclylngqykrAyellrka.klnskslgcryl 61 
                 + Ai ++  +l  e+ ++ d+y  l+  +++++q ++A ++l+++  l++++  +  l
  CCD23677.1 650 ERAIKCFKAVL-EESGHDADIYCsLGFLYLKTNQLEKAVDYLHNSlSLKPTNNSAQEL 706
                 67999999999.8888888888868*******************98888877655554 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.6   1.2e+03       5      24 ..     234     253 ..     233     255 .. 0.87
   2 ?    0.8   0.0      0.99   7.7e+02       5      20 ..     267     282 ..     265     285 .. 0.89
   3 !   13.0   0.0   0.00012     0.094       2      31 ..     319     348 ..     318     351 .. 0.93
   4 !    7.0   0.0    0.0098       7.6       3      32 ..     492     521 ..     490     523 .. 0.90
   5 ?    5.4   0.0     0.033        25       2      28 ..     525     551 ..     524     555 .. 0.88
   6 ?   -1.0   0.1       3.8   2.9e+03       6      27 ..     563     584 ..     561     588 .. 0.82
   7 !   13.8   0.8   6.4e-05      0.05       4      29 ..     595     620 ..     594     621 .. 0.92
   8 !   20.4   0.0   5.1e-07    0.0004       3      29 ..     635     661 ..     633     665 .. 0.91
   9 !   18.1   0.1   2.7e-06    0.0021       1      34 []     667     700 ..     667     700 .. 0.95
  10 ?   -2.3   0.0       9.6   7.5e+03      19      31 ..     702     714 ..     701     714 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.6
                 HHHHHHHHHTT-HHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyy 24 
                 ++l+++  + g y  A+e +
  CCD23677.1 234 FWLAQVFYNNGSYLRAIELL 253
                 68999***********9977 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.99
                 HHHHHHHHHTT-HHHH CS
       TPR_8   5 ynlgsiylklgdyeeA 20 
                 y++g++++kl++++ A
  CCD23677.1 267 YLMGLCLFKLERFDDA 282
                 899**********988 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 0.00012
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleld 31 
                 +++++ g+i l+++++ +Ak++++ a+ +d
  CCD23677.1 319 SLCFLRGKIFLSQNNFTKAKQSLKDAILID 348
                 579***********************9887 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0098
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldp 32 
                  ++  +  y++l+++ +A +y+ ka  ldp
  CCD23677.1 492 TWFSVATYYMSLNNIPMARKYFSKASILDP 521
                 5899999******************88887 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.033
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 +a++  +++    g++++A+++y  a 
  CCD23677.1 525 SAWLGFAHTFALEGEHDQAISAYSTAS 551
                 689999*****************8875 PP

  == domain 6  score: -1.0 bits;  conditional E-value: 3.8
                 HHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyeka 27 
                  lg+ y+    +  A+ey+  a
  CCD23677.1 563 FLGMEYMASSTLSLAEEYFTLA 584
                 5889999999999999999877 PP

  == domain 7  score: 13.8 bits;  conditional E-value: 6.4e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekale 29 
                 ++ +g +y+k++++ ++k+y++kale
  CCD23677.1 595 LNEMGVLYFKKNELSKSKKYLKKALE 620
                 57799*******************98 PP

  == domain 8  score: 20.4 bits;  conditional E-value: 5.1e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 + +nl+++y+klg+ e A+++++ +le
  CCD23677.1 635 IQMNLAHTYRKLGENERAIKCFKAVLE 661
                 5689********************998 PP

  == domain 9  score: 18.1 bits;  conditional E-value: 2.7e-06
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 a++y+ lg +ylk++++e+A+ y+   l+l+p+n
  CCD23677.1 667 ADIYCSLGFLYLKTNQLEKAVDYLHNSLSLKPTN 700
                 689****************************976 PP

  == domain 10  score: -2.3 bits;  conditional E-value: 9.6
                 HHHHHHHHHHHHH CS
       TPR_8  19 eAkeyyekaleld 31 
                 +A+e + +alel+
  CCD23677.1 702 SAQELLLHALELN 714
                 79999******97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00052      0.41       4      48 ..     243     286 ..     208     289 .. 0.95
   2 !    7.8   0.0     0.006       4.6      32      64 ..     325     358 ..     317     361 .. 0.83
   3 !    8.7   0.0    0.0031       2.4      10      52 ..     509     551 ..     504     558 .. 0.90
   4 ?    7.1   0.0      0.01       7.8      24      66 ..     591     632 ..     569     632 .. 0.84
   5 !   21.1   0.0   4.1e-07   0.00032       5      58 ..     647     700 ..     635     709 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00052
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealL 48 
                 +g y +A++ll++  +++  n   r+l+  +l++l ++d+A +++
  CCD23677.1 243 NGSYLRAIELLSK-DSYATSNVICRYLMGLCLFKLERFDDALDIV 286
                 79999********.899999*********************9875 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.006
      TPR_19  32 AeallalgqldeAealLdalpeedpdd.aryasL 64 
                  ++ l+++++++A++ L+++ + d ++ ++y  L
  CCD23677.1 325 GKIFLSQNNFTKAKQSLKDAILIDVKNfEAYEEL 358
                 567899**************99999977777665 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0031
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 A +++++a   dp  + a+l+ A      g+ d+A+ + +++ 
  CCD23677.1 509 ARKYFSKASILDPTFSSAWLGFAHTFALEGEHDQAISAYSTAS 551
                 899********************************98877765 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.01
      TPR_19  24 naearllLAeallalgqldeAealLdalpeedpddaryasLlA 66 
                 ++ ++  +  ++++ ++l + ++ L++++e+ +  +++ s +A
  CCD23677.1 591 DPLLLNEMGVLYFKKNELSKSKKYLKKALESLRA-SNMTSKMA 632
                 667788999**********************999.88888776 PP

  == domain 5  score: 21.1 bits;  conditional E-value: 4.1e-07
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                 g  ++A++ ++++l+e+ ++a++   L  ++l+++ql++A + L   +  +p +
  CCD23677.1 647 GENERAIKCFKAVLEESGHDADIYCSLGFLYLKTNQLEKAVDYLHNSLSLKPTN 700
                 66789***********************************99987776666665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.66   5.1e+02       6      25 ..     235     254 ..     230     255 .. 0.87
   2 ?   -1.0   0.0         6   4.7e+03       4      22 ..     266     284 ..     264     286 .. 0.84
   3 !    7.8   0.0    0.0084       6.6       7      41 ..     324     358 ..     321     359 .. 0.93
   4 ?    0.3   0.0       2.2   1.7e+03      18      37 ..     439     458 ..     437     464 .. 0.77
   5 ?    4.9   0.0     0.073        57       4      40 ..     493     529 ..     490     533 .. 0.88
   6 !    7.7   0.0    0.0091       7.1       3      33 ..     526     556 ..     524     565 .. 0.87
   7 ?   -1.1   0.0       6.3   4.9e+03       6      29 ..     597     620 ..     592     625 .. 0.81
   8 !   14.7   0.0   5.4e-05     0.042       6      43 ..     638     675 ..     634     676 .. 0.90
   9 ?    7.1   0.0     0.015        11       8      41 ..     674     707 ..     672     710 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.66
      TPR_14   6 alaeallalGdpdeAiallr 25 
                  la++++++G + +Ai+ll 
  CCD23677.1 235 WLAQVFYNNGSYLRAIELLS 254
                 69***************996 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 6
      TPR_14   4 llalaeallalGdpdeAia 22 
                 +++++  l+ l+++d+A++
  CCD23677.1 266 RYLMGLCLFKLERFDDALD 284
                 5778888999*******97 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0084
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawlll 41 
                 +++++l + ++ +A + l++a+  + ++ ea+ +l
  CCD23677.1 324 RGKIFLSQNNFTKAKQSLKDAILIDVKNFEAYEEL 358
                 78999**************************9987 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 2.2
      TPR_14  18 deAiallrralalaPddaea 37 
                  e ++l++ral+++  ++++
  CCD23677.1 439 NECLELCERALEDDEFNPTV 458
                 57899*******98766655 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.073
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawll 40 
                 +   a +++ l +   A++++ +a  l+P++  awl 
  CCD23677.1 493 WFSVATYYMSLNNIPMARKYFSKASILDPTFSSAWLG 529
                 556688999***************99*********86 PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.0091
      TPR_14   3 allalaeallalGdpdeAiallrralalaPd 33 
                 a+l  a+ ++  G++d+Ai ++  a + +P+
  CCD23677.1 526 AWLGFAHTFALEGEHDQAISAYSTASRFFPG 556
                 899999*******************999997 PP

  == domain 7  score: -1.1 bits;  conditional E-value: 6.3
      TPR_14   6 alaeallalGdpdeAiallrrala 29 
                 +++ +++   ++ ++ ++l++al+
  CCD23677.1 597 EMGVLYFKKNELSKSKKYLKKALE 620
                 567788888999999999999987 PP

  == domain 8  score: 14.7 bits;  conditional E-value: 5.4e-05
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                  la+ ++ lG+ ++Ai++++++l+    da+++  l++
  CCD23677.1 638 NLAHTYRKLGENERAIKCFKAVLEESGHDADIYCSLGF 675
                 599**************************999877765 PP

  == domain 9  score: 7.1 bits;  conditional E-value: 0.015
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawlll 41 
                 + ++l   ++++A+++l+  l+l P++  a+ ll
  CCD23677.1 674 GFLYLKTNQLEKAVDYLHNSLSLKPTNNSAQELL 707
                 66899999*****************999888776 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       2.2   1.7e+03      32      42 .]     234     244 ..     229     244 .. 0.89
   2 ?   -1.4   0.1       2.5   1.9e+03       3      17 ..     239     253 ..     237     255 .. 0.64
   3 !   12.1   0.0   0.00015      0.11       1      34 [.     325     358 ..     325     358 .. 0.96
   4 ?    1.5   0.0      0.31   2.4e+02       4      38 ..     500     534 ..     499     538 .. 0.86
   5 ?    5.5   0.0     0.017        13       4      22 ..     534     552 ..     531     555 .. 0.84
   6 ?    0.5   0.0      0.63   4.9e+02       3      21 ..     601     619 ..     591     620 .. 0.63
   7 !   25.7   0.0   8.3e-09   6.5e-06       2      41 ..     641     680 ..     640     681 .. 0.95
   8 ?    3.7   0.1     0.064        50       4      30 ..     677     703 ..     677     711 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.2
      TPR_11  32 ynLGlayykqG 42 
                 ++L++++y++G
  CCD23677.1 234 FWLAQVFYNNG 244
                 79******998 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.5
      TPR_11   3 ayyeqGkyeeAieaY 17 
                 ++y  G y  Aie +
  CCD23677.1 239 VFYNNGSYLRAIELL 253
                 667777777777655 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 0.00015
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynL 34 
                 G+++ +q+++++A +++k A+ +d +n eay +L
  CCD23677.1 325 GKIFLSQNNFTKAKQSLKDAILIDVKNFEAYEEL 358
                 99*****************************876 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.31
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                 y+++++++ A + ++kA  ldP++ +a+++ ++++
  CCD23677.1 500 YMSLNNIPMARKYFSKASILDPTFSSAWLGFAHTF 534
                 889999999**************999998777665 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.017
      TPR_11   4 yyeqGkyeeAieaYkkAlk 22 
                 +   G+ ++Ai aY++A +
  CCD23677.1 534 FALEGEHDQAISAYSTASR 552
                 6678*************86 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.63
      TPR_11   3 ayyeqGkyeeAieaYkkAl 21 
                 +y++++++ ++ + +kkAl
  CCD23677.1 601 LYFKKNELSKSKKYLKKAL 619
                 4666777666666666666 PP

  == domain 7  score: 25.7 bits;  conditional E-value: 8.3e-09
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 + y+++G++e Ai+++k+ l+ +  +a++y+ LG++y+k 
  CCD23677.1 641 HTYRKLGENERAIKCFKAVLEESGHDADIYCSLGFLYLKT 680
                 68***********************************985 PP

  == domain 8  score: 3.7 bits;  conditional E-value: 0.064
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaea 30 
                 y + +++e+A+  + + l l+P+n +a
  CCD23677.1 677 YLKTNQLEKAVDYLHNSLSLKPTNNSA 703
                 7789*******************9776 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0085       6.6      39      67 ..     257     285 ..     232     289 .. 0.69
   2 ?   -0.7   0.0       2.3   1.8e+03      51      72 ..     324     345 ..     321     348 .. 0.85
   3 ?    0.0   0.0       1.4   1.1e+03      20      39 ..     439     451 ..     435     471 .. 0.68
   4 ?    0.1   0.0       1.3     1e+03       5      29 ..     492     516 ..     490     519 .. 0.81
   5 ?    4.4   0.0      0.06        47       4      30 ..     525     551 ..     522     557 .. 0.78
   6 ?    6.7   0.0     0.012         9      48      75 ..     595     622 ..     574     624 .. 0.70
   7 !   21.4   0.1     3e-07   0.00023       5      73 ..     594     661 ..     590     661 .. 0.93
   8 !   25.9   0.2   1.2e-08   9.1e-06       4      71 ..     634     693 ..     631     699 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0085
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlel 67 
                  +    +++++ +g ++++l+r+++Al++
  CCD23677.1 257 SYATSNVICRYLMGLCLFKLERFDDALDI 285
                 44455566777777777777777777765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.3
      TPR_12  51 LgrlyralgryeeAlelleeal 72 
                  g +++ ++++ +A + l++a+
  CCD23677.1 324 RGKIFLSQNNFTKAKQSLKDAI 345
                 5788999999999999999885 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 1.4
      TPR_12  20 deAlellekaleiarrllGp 39 
                  e+lel+e+ale       +
  CCD23677.1 439 NECLELCERALE-------D 451
                 455555555555.......3 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.3
      TPR_12   5 alnnlaavlrrlgrydeAlelleka 29 
                 ++  +a+ ++ l +   A++++ ka
  CCD23677.1 492 TWFSVATYYMSLNNIPMARKYFSKA 516
                 5656889999999999999999998 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.06
      TPR_12   4 talnnlaavlrrlgrydeAlellekal 30 
                 +a+   a++ +  g++d+A++ + +a 
  CCD23677.1 525 SAWLGFAHTFALEGEHDQAISAYSTAS 551
                 566678888888999999999888875 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.012
      TPR_12  48 lrnLgrlyralgryeeAlelleealaia 75 
                 l+ +g ly++ +++ +  ++l++al+ +
  CCD23677.1 595 LNEMGVLYFKKNELSKSKKYLKKALESL 622
                 5566666666666666666666666654 PP

  == domain 7  score: 21.4 bits;  conditional E-value: 3e-07
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 +ln++++++++  ++ ++ ++l+kale  r++  + +  + +++ nL+ +yr+lg+ e A++ ++ +l+
  CCD23677.1 594 LLNEMGVLYFKKNELSKSKKYLKKALESLRASNMTSK-MAFSIQMNLAHTYRKLGENERAIKCFKAVLE 661
                 5778****************************99866.99************************98886 PP

  == domain 8  score: 25.9 bits;  conditional E-value: 1.2e-08
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 +++ nla+++r+lg+ + A+++++++le       + h   a +++ Lg ly++++++e+A+++l  +
  CCD23677.1 634 SIQMNLAHTYRKLGENERAIKCFKAVLEES-----G-H--DADIYCSLGFLYLKTNQLEKAVDYLHNS 693
                 6889**********************8888.....4.6..79**********************8555 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0033       2.6       3      55 ..     236     284 ..     236     289 .. 0.86
   2 ?    2.1   0.0       0.4   3.1e+02       3      35 ..     324     353 ..     322     359 .. 0.76
   3 ?    6.9   0.0     0.013        10       4      61 ..     497     551 ..     494     556 .. 0.88
   4 ?   -1.2   0.0       4.3   3.4e+03      43      68 .]     567     592 ..     561     592 .. 0.76
   5 !   21.1   0.0   4.7e-07   0.00037       2      56 ..     638     689 ..     637     698 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0033
      TPR_16   3 laraalragdyddAaaal.eaalkrdpssPdaaeAllllgdaalrqgrlaeAaa 55 
                 la+ ++++g y +A+++l +   +       ++  ++l g++++++ r+++A++
  CCD23677.1 236 LAQVFYNNGSYLRAIELLsKDSYATS-----NVICRYLMGLCLFKLERFDDALD 284
                 6899999999*****88866666666.....*********************84 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.4
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaae 35 
                 +++++l ++++++A   l+ a+  d     + e
  CCD23677.1 324 RGKIFLSQNNFTKAKQSLKDAILID---VKNFE 353
                 78999***********998887655...55555 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.013
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 a++++ +++ + A++++  a  +d   P    A+l+ +  ++  g+++ A+ +y  a 
  CCD23677.1 497 ATYYMSLNNIPMARKYFSKASILD---PTFSSAWLGFAHTFALEGEHDQAISAYSTAS 551
                 8999********************...66677*******************9998775 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 4.3
      TPR_16  43 aalrqgrlaeAaalyraalraapdap 68 
                  + + + l +A++++  a++   ++p
  CCD23677.1 567 EYMASSTLSLAEEYFTLAYDTCRFDP 592
                 5666778999********98877765 PP

  == domain 5  score: 21.1 bits;  conditional E-value: 4.7e-07
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaal 56 
                 +la+ ++++g+ ++A++ ++a+l+       +a+ +  lg ++l+ + l++A+++
  CCD23677.1 638 NLAHTYRKLGENERAIKCFKAVLEES---GHDADIYCSLGFLYLKTNQLEKAVDY 689
                 79************************...99*********************976 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.3   1.8e+03       4      20 ..     268     284 ..     265     286 .. 0.86
   2 ?    1.2   0.0       0.6   4.7e+02       2      24 ..     321     343 ..     320     355 .. 0.79
   3 ?    1.0   0.0      0.68   5.3e+02      19      35 ..     442     456 ..     439     457 .. 0.89
   4 ?    2.3   0.0      0.26   2.1e+02       6      22 ..     531     547 ..     526     552 .. 0.85
   5 !    8.2   0.0    0.0036       2.8       2      27 ..     595     620 ..     594     626 .. 0.87
   6 !   21.4   0.0   2.2e-07   0.00017       4      32 ..     638     664 ..     637     668 .. 0.87
   7 ?    6.4   0.0     0.013        10       2      30 ..     670     698 ..     669     704 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.3
       TPR_7   4 nLarlysrlGdyeeAie 20 
                  ++ + ++l ++++A++
  CCD23677.1 268 LMGLCLFKLERFDDALD 284
                 689999*********86 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.6
       TPR_7   2 LlnLarlysrlGdyeeAielyeq 24 
                 ++  + ++ +++++ +A + ++ 
  CCD23677.1 321 CFLRGKIFLSQNNFTKAKQSLKD 343
                 566799***********877776 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.68
       TPR_7  19 ielyeqsLaltkdpeda 35 
                 +el+e+  al++d++++
  CCD23677.1 442 LELCER--ALEDDEFNP 456
                 589***..*****9987 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.26
       TPR_7   6 arlysrlGdyeeAiely 22 
                 a+++  +G++++Ai+ y
  CCD23677.1 531 AHTFALEGEHDQAISAY 547
                 6788889*******998 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0036
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLa 27 
                 L+ +++ly++ ++ ++  ++++++L+
  CCD23677.1 595 LNEMGVLYFKKNELSKSKKYLKKALE 620
                 899********************874 PP

  == domain 6  score: 21.4 bits;  conditional E-value: 2.2e-07
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdp 32 
                 nLa++y++lG+ e+Ai+++++  +l+++ 
  CCD23677.1 638 NLAHTYRKLGENERAIKCFKA--VLEESG 664
                 9********************..776665 PP

  == domain 7  score: 6.4 bits;  conditional E-value: 0.013
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltk 30 
                 ++ L+ ly + ++ e+A++++  sL l  
  CCD23677.1 670 YCSLGFLYLKTNQLEKAVDYLHNSLSLKP 698
                 788999****************9887765 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1      0.16   1.2e+02      16      34 .]     233     251 ..     228     251 .. 0.86
   2 ?    1.4   0.0      0.69   5.4e+02       2      33 ..     246     283 ..     245     284 .. 0.65
   3 ?   -1.1   0.0       4.2   3.3e+03      17      34 .]     322     339 ..     322     339 .. 0.90
   4 ?   -1.6   0.0         6   4.7e+03       1      15 [.     444     458 ..     444     459 .. 0.82
   5 !    7.3   0.0    0.0087       6.8       5      34 .]     482     511 ..     481     511 .. 0.92
   6 !    7.5   0.0    0.0077         6       4      33 ..     515     544 ..     512     545 .. 0.89
   7 ?   -0.2   0.0       2.1   1.7e+03      12      30 ..     591     609 ..     588     613 .. 0.81
   8 ?    5.7   0.1     0.029        22      18      34 .]     638     654 ..     635     654 .. 0.93
   9 !   13.8   0.0   7.6e-05     0.059       1      33 [.     655     687 ..     655     688 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.16
      TPR_17  16 ynnLAelllknGdlmtArq 34 
                  + LA+++++nG + +A++
  CCD23677.1 233 AFWLAQVFYNNGSYLRAIE 251
                 689*********9999985 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.69
      TPR_17   2 ylkaleldPnn......adaynnLAelllknGdlmtAr 33 
                 yl+a+el  ++      +   ++++ +l k+ ++++A+
  CCD23677.1 246 YLRAIELLSKDsyatsnVICRYLMGLCLFKLERFDDAL 283
                 77777774444233333888888888888888888775 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 4.2
      TPR_17  17 nnLAelllknGdlmtArq 34 
                 +++++++l+++++ +A+q
  CCD23677.1 322 FLRGKIFLSQNNFTKAKQ 339
                 6799*********99987 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 6
      TPR_17   1 lylkaleldPnnada 15 
                 l+++ale d  n+ +
  CCD23677.1 444 LCERALEDDEFNPTV 458
                 79*****99888766 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0087
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtArq 34 
                  +e+ P+ a  ++  A+++ ++++  +Ar+
  CCD23677.1 482 LAENFPKWAITWFSVATYYMSLNNIPMARK 511
                 5799********************999985 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.0077
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtAr 33 
                 ka  ldP+ + a+   A +++  G++++A+
  CCD23677.1 515 KASILDPTFSSAWLGFAHTFALEGEHDQAI 544
                 67778***********************97 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 2.1
      TPR_17  12 nadaynnLAelllknGdlm 30 
                 ++ ++n++++l+ k+++l 
  CCD23677.1 591 DPLLLNEMGVLYFKKNELS 609
                 67789*******9998765 PP

  == domain 8  score: 5.7 bits;  conditional E-value: 0.029
      TPR_17  18 nLAelllknGdlmtArq 34 
                 nLA +++k+G+ ++A++
  CCD23677.1 638 NLAHTYRKLGENERAIK 654
                 9**************85 PP

  == domain 9  score: 13.8 bits;  conditional E-value: 7.6e-05
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 +++ +le    +ad y+ L+ l+lk ++l++A+
  CCD23677.1 655 CFKAVLEESGHDADIYCSLGFLYLKTNQLEKAV 687
                 68889999999*******************996 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.56   4.3e+02       4      24 ..     234     254 ..     233     255 .. 0.91
   2 ?    5.4   0.0     0.043        34       3      21 ..     266     284 ..     265     285 .. 0.89
   3 ?    2.8   0.0      0.28   2.2e+02       4      27 ..     322     345 ..     319     346 .. 0.89
   4 ?   -1.4   0.0       6.3   4.9e+03       3      15 ..     391     402 ..     390     412 .. 0.78
   5 ?    2.1   0.0      0.48   3.7e+02      11      30 ..     535     554 ..     526     556 .. 0.71
   6 ?    4.3   0.0     0.098        77       6      28 ..     598     620 ..     597     621 .. 0.91
   7 !    9.8   0.0    0.0017       1.3       4      29 ..     637     662 ..     635     664 .. 0.92
   8 ?    3.8   0.0      0.13   1.1e+02       6      24 ..     673     691 ..     672     695 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.56
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAleale 24 
                 ++la+ +++ g + +A+e+l 
  CCD23677.1 234 FWLAQVFYNNGSYLRAIELLS 254
                 89*******99*******986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.043
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAle 21 
                  y+++l+++kl + d+Al+
  CCD23677.1 266 RYLMGLCLFKLERFDDALD 284
                 69********88*****97 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerli 27 
                 +++++ ++++++ +kA++ l++ i
  CCD23677.1 322 FLRGKIFLSQNNFTKAKQSLKDAI 345
                 788999***9********998765 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 6.3
                 HHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgd 15 
                 lyk+ ls++   +
  CCD23677.1 391 LYKISLSQYLN-N 402
                 8*******975.4 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.48
                 HHHHHHHHHHHHHHHHHHH- CS
       TPR_6  11 rklgdtdkAlealerlikeY 30 
                    g++d+A+ a+    + +
  CCD23677.1 535 ALEGEHDQAISAYSTASRFF 554
                 3358*********8766555 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.098
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlik 28 
                 ++ +y+k ++ +k++++l++ ++
  CCD23677.1 598 MGVLYFKKNELSKSKKYLKKALE 620
                 89*****88**********9986 PP

  == domain 7  score: 9.8 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerlike 29 
                 ++la  yrklg+ ++A++ ++ +++e
  CCD23677.1 637 MNLAHTYRKLGENERAIKCFKAVLEE 662
                 6899*******************986 PP

  == domain 8  score: 3.8 bits;  conditional E-value: 0.13
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAleale 24 
                 l+ +y+k+++ +kA+++l 
  CCD23677.1 673 LGFLYLKTNQLEKAVDYLH 691
                 7899***99*******985 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.19   1.5e+02      19      38 ..     439     451 ..     432     453 .. 0.62
   2 ?    6.4   0.0     0.011       8.6       5      33 ..     595     623 ..     594     625 .. 0.93
   3 !   11.5   0.0   0.00027      0.21       4      30 ..     635     661 ..     634     662 .. 0.91
   4 ?    6.1   0.0     0.014        11       2      30 ..     667     695 ..     667     697 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.19
      TPR_10  19 deAealleealairrrllGp 38 
                 +       e+l++++r+l++
  CCD23677.1 439 N-------ECLELCERALED 451
                 4.......566666666655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.011
      TPR_10   5 lnNLanalrqrgrydeAealleealairr 33 
                 ln +++++++ +++ ++ ++l++al+  r
  CCD23677.1 595 LNEMGVLYFKKNELSKSKKYLKKALESLR 623
                 89***********************9766 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00027
      TPR_10   4 slnNLanalrqrgrydeAealleeala 30 
                 ++ NLa+++r++g+ ++A + ++ +l+
  CCD23677.1 635 IQMNLAHTYRKLGENERAIKCFKAVLE 661
                 789*****************9999886 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.014
      TPR_10   2 AsslnNLanalrqrgrydeAealleeala 30 
                 A ++  L+ ++ +++++++A+++l+ +l+
  CCD23677.1 667 ADIYCSLGFLYLKTNQLEKAVDYLHNSLS 695
                 678899******************99887 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.47   3.7e+02      26      76 ..     248     299 ..     247     314 .. 0.86
   2 ?    4.0   0.0     0.034        27     124     151 ..     320     347 ..     306     363 .. 0.88
   3 !    6.7   0.0    0.0052       4.1     124     183 ..     594     655 ..     523     661 .. 0.79
   4 !   13.0   0.0   6.3e-05     0.049      46     171 ..     598     716 ..     594     723 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.47
    TPR_MalT  26 qALallpeddllar.iaatavlGeasllqGdleaAlqalqeaeklarqadsl 76 
                 +A++ll++d + ++ ++ ++++G   +  +++++Al+   e+  +a + +++
  CCD23677.1 248 RAIELLSKDSYATSnVICRYLMGLCLFKLERFDDALDIVGETNPFATSKEKI 299
                 79********99988999******************9999998888776665 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.034
    TPR_MalT 124 llvlladllyEwndLeeAeqhlqeGiel 151
                 l+ l++++++ +n++++A+q l+ +i +
  CCD23677.1 320 LCFLRGKIFLSQNNFTKAKQSLKDAILI 347
                 67799******************99865 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0052
    TPR_MalT 124 llvlladllyEwndLeeAeqhlqeGielleql..epeaaldayvllarialaqGdleeAetl 183
                 ll +++ l++ +n+L + +++l++++e l+     ++ a  +++ la+ +   G++e A + 
  CCD23677.1 594 LLNEMGVLYFKKNELSKSKKYLKKALESLRASnmTSKMAFSIQMNLAHTYRKLGENERAIKC 655
                 55677888888888888888888888877764336677778888888888888888777654 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 6.3e-05
    TPR_MalT  46 lGeasllqGdleaAlqalqeaeklarqadslhvallall.qqaeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeq 143
                 +G  ++ +++l ++ + l++a + +r+ + +  +++++   +a ++++ G+ + A++ ++  l+    ++++       ++ +l+ l++  n+Le+A +
  CCD23677.1 598 MGVLYFKKNELSKSKKYLKKALESLRASNMTSKMAFSIQmNLAHTYRKLGENERAIKCFKAVLE----ESGHD----ADIYCSLGFLYLKTNQLEKAVD 688
                 7888999999999999999999999888888776666644888899999999999888887776....45554....4677778999999999999999 PP

    TPR_MalT 144 hlqeGielleqlepeaaldayvllaria 171
                 +l++++ l    ++++ l   +l   ++
  CCD23677.1 689 YLHNSLSLKPTNNSAQELLLHALELNVS 716
                 9999988877776666666666666655 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.89     7e+02       7      34 ..     229     256 ..     224     264 .. 0.82
   2 ?    1.9   0.0      0.13     1e+02     164     268 ..     440     544 ..     435     550 .. 0.87
   3 !    9.5   0.1   0.00064       0.5     113     199 ..     595     683 ..     577     691 .. 0.68
   4 !    6.5   0.0    0.0053       4.2     153     190 ..     674     711 ..     666     738 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.89
      TPR_15   7 plnealklatllykqgdvkkAlevLkea 34 
                 ++n+a  la+++y++g + +A e L ++
  CCD23677.1 229 DPNDAFWLAQVFYNNGSYLRAIELLSKD 256
                 56899999***************99543 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.13
      TPR_15 164 aAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkaraesdasLwgplaaAlllLgrpkkALeylrkqakenrkdplwllaYADaleqag 262
                 + l++ ++Al+ +  + ++   +l  l +lg +++L  +  ++ ++  + a  w   a+ ++ L++   A +y+ k     +   +  l +A +   +g
  CCD23677.1 440 ECLELCERALEDDEFNPTVLPIYLSCLFELGGDNKLFLISHNLAENFPKWAITWFSVATYYMSLNNIPMARKYFSKASILDPTFSSAWLGFAHTFALEG 538
                 56889999***99999******************9888888888888999************************9987777777777788888888888 PP

      TPR_15 263 radeAw 268
                 + d+A 
  CCD23677.1 539 EHDQAI 544
                 888886 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00064
      TPR_15 113 Lssalellerakdydriaellksleeeeaae..qsaaflla...raelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeL 199
                 L ++  l+ + +++++ ++ lk++ e  +a+   s + +++   +a  yr+ g++++A+++++ +l+ ++ ++++   l +l++ +++   L
  CCD23677.1 595 LNEMGVLYFKKNELSKSKKYLKKALESLRASnmTSKMAFSIqmnLAHTYRKLGENERAIKCFKAVLEESGHDADIYCSLGFLYLKTNQ---L 683
                 5555555666666666666666655433333244444443322379999*********************999999999888884444...3 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0053
      TPR_15 153 aelyrqegqtdaAlrdyreAlalapdsselraallWll 190
                 + ly++++q ++A+  + + l+l+p+++++++ ll +l
  CCD23677.1 674 GFLYLKTNQLEKAVDYLHNSLSLKPTNNSAQELLLHAL 711
                 56899**************************9999876 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.8   4.5e+03      28      57 ..     591     620 ..     591     626 .. 0.85
   2 !   14.8   0.0   3.1e-05     0.024       3      66 ..     641     704 ..     639     712 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.8
       TPR_9  28 dpeerrdRGlllaqlGclsaAladLeayla 57 
                 dp ++ + G+l+++ + ls+  + L  +l+
  CCD23677.1 591 DPLLLNEMGVLYFKKNELSKSKKYLKKALE 620
                 67788899******9999999999999887 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 3.1e-05
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdae 66 
                 +++    ++era+++   +l    +d++ +   G+l+ + ++l++A++ L   l+l p +  a 
  CCD23677.1 641 HTYRKLGENERAIKCFKAVLEESGHDADIYCSLGFLYLKTNQLEKAVDYLHNSLSLKPTNNSAQ 704
                 677888899*************************************************666554 PP

>> SRP_TPR_like  Putative TPR-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1      0.01       7.9      79     106 ..     234     261 ..     211     270 .. 0.80
   2 !    7.0   0.0    0.0072       5.6      22      69 ..     271     342 ..     260     394 .. 0.78
   3 ?    2.7   0.9      0.15   1.2e+02      54     101 ..     601     649 ..     592     658 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.01
  SRP_TPR_like  79 vlksqvlYrlgsyekAYklLskekkede 106
                     ++qv+Y  gsy +A +lLsk+ +   
    CCD23677.1 234 FWLAQVFYNNGSYLRAIELLSKDSYATS 261
                   5679******************998765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0072
  SRP_TPR_like  22 valiklekyeeaLkllkkgs........................alsedvrfEkaYvlYklkkykkalkilk 69 
                   ++l kle++++aL ++ +++                        ++++++ f +  ++   ++++ka + lk
    CCD23677.1 271 LCLFKLERFDDALDIVGETNpfatskekidvenpeipiqadggiKIESSLCFLRGKIFLSQNNFTKAKQSLK 342
                   79*************999988888888888777777777777777777777777777777777777776655 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.15
  SRP_TPR_like  54 vlYklkkykkalkilkkveaeekvkvlksqvlYrlg.syekAYklLske 101
                    ++k +++ k+ k lkk+ ++ +++ ++s++++ ++ + ++ Y+ L ++
    CCD23677.1 601 LYFKKNELSKSKKYLKKALESLRASNMTSKMAFSIQmNLAHTYRKLGEN 649
                   6789999999999999988888999999999887652456667776554 PP

>> DUF4810  Domain of unknown function (DUF4810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0       0.2   1.6e+02      45      70 ..     592     617 ..     570     627 .. 0.87
   2 ?    2.4   0.0       0.3   2.4e+02      14      70 ..     602     658 ..     600     663 .. 0.71
   3 ?    6.6   0.0     0.015        12      47      69 ..     669     691 ..     643     698 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.2
     DUF4810  45 PGlyAelGllylkegkkeeaieafek 70 
                 P l  e+G+ly+k+++ ++ +++++k
  CCD23677.1 592 PLLLNEMGVLYFKKNELSKSKKYLKK 617
                 667789****************9987 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.3
     DUF4810  14 yykedeeskekqieklekiiekaeakgk..kvpPGlyAelGllylkegkkeeaieafek 70 
                 y+k+  ++ +k ++ l+k++e+ +a+++  k++  ++ +l+  y k g++e ai+ f++
  CCD23677.1 602 YFKK--NELSKSKKYLKKALESLRASNMtsKMAFSIQMNLAHTYRKLGENERAIKCFKA 658
                 4554..4555555666666666665554116778899999999**********999985 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.015
     DUF4810  47 lyAelGllylkegkkeeaieafe 69 
                 +y+ lG+lylk+++ e+a+++++
  CCD23677.1 669 IYCSLGFLYLKTNQLEKAVDYLH 691
                 799****************9987 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.31   2.4e+02       3      24 ..     265     286 ..     264     288 .. 0.92
   2 ?   -2.0   0.1       4.9   3.9e+03      17      31 ..     438     452 ..     437     456 .. 0.82
   3 ?    1.8   0.2      0.33   2.6e+02      11      29 ..     602     620 ..     599     622 .. 0.90
   4 ?    1.1   0.0      0.55   4.3e+02       7      29 ..     639     661 ..     638     664 .. 0.89
   5 ?    9.8   0.3     0.001       0.8      11      40 ..     677     706 ..     670     710 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.31
                 HHHHHHHHHHHHT-HHHHHHHH CS
  Fis1_TPR_C   3 clYylAlGhyklgeYseArryv 24 
                 c Y+  l  +kl ++++A+  v
  CCD23677.1 265 CRYLMGLCLFKLERFDDALDIV 286
                 99****************9865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.9
                 HHHHHHHHHHHHHHT CS
  Fis1_TPR_C  17 YseArryvdalLeiE 31 
                 ++e+++++++ Le +
  CCD23677.1 438 FNECLELCERALEDD 452
                 799********9966 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.33
                 HHHHT-HHHHHHHHHHHHH CS
  Fis1_TPR_C  11 hyklgeYseArryvdalLe 29 
                 ++k  e s++++y++  Le
  CCD23677.1 602 YFKKNELSKSKKYLKKALE 620
                 68999**********9997 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.55
                 HHHHHHHHT-HHHHHHHHHHHHH CS
  Fis1_TPR_C   7 lAlGhyklgeYseArryvdalLe 29 
                 lA  + klge ++A ++ +a+Le
  CCD23677.1 639 LAHTYRKLGENERAIKCFKAVLE 661
                 677788***************98 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.001
                 HHHHT-HHHHHHHHHHHHHHTTS-HHHHHH CS
  Fis1_TPR_C  11 hyklgeYseArryvdalLeiEPenrQaqsL 40 
                 ++k  + ++A  y+   L++ P n+ aq+L
  CCD23677.1 677 YLKTNQLEKAVDYLHNSLSLKPTNNSAQEL 706
                 78999************************9 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.75   5.8e+02      16      45 ..     227     253 ..     216     255 .. 0.84
   2 ?    1.7   0.0      0.41   3.2e+02       7      48 ..     618     659 ..     613     663 .. 0.82
   3 ?    7.2   0.1    0.0079       6.1       8      69 ..     653     712 ..     648     716 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.75
      TPR_20  16 aanpddldarldlAlallaagryeeAleqL 45 
                 +a+p+d   ++ lA++ + +g y  A+e+L
  CCD23677.1 227 TADPND---AFWLAQVFYNNGSYLRAIELL 253
                 555555...9*****************998 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.41
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeAleqLlei 48 
                  l++l+a   +++    ++++lA  + + g++e A++ + ++
  CCD23677.1 618 ALESLRASNMTSKMAFSIQMNLAHTYRKLGENERAIKCFKAV 659
                 567777888888888999*****************9866555 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0079
      TPR_20   8 laeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqllkife 69 
                 ++ ++a l+++  d d+ + l  ++l+ ++ e+A++ L + l+  +k ++++a++ ll  +e
  CCD23677.1 653 IKCFKAVLEESGHDADIYCSLGFLYLKTNQLEKAVDYLHNSLS--LKPTNNSAQELLLHALE 712
                 5667788999999***************************998..66667888888888777 PP

>> SPO22  Meiosis protein SPO22/ZIP4 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.22   1.7e+02       5      50 ..     210     256 ..     207     284 .. 0.80
   2 ?    2.9   0.4     0.084        65      24      75 ..     376     428 ..     368     454 .. 0.82
   3 ?   11.2   2.7   0.00024      0.19      41     151 ..     597     707 ..     566     737 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.22
       SPO22   5 egdldlAehmlskakceenllrldpeeaeeLarllyniGksll.....skk 50 
                 ++ + +Ae+  +k+       ++dp++a  La+++yn G  l      sk 
  CCD23677.1 210 QHMYRTAEYIGNKIY----TITADPNDAFWLAQVFYNNGSYLRaiellSKD 256
                 666778888888864....88899*************99877655555555 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.084
       SPO22  24 llrldpeeaeeLarllyniGksll.skkkyeeavkWLqraldilekqesesks 75 
                 l++   ++ ee+ r ly+i +s + ++ + e++ ++L++ + ++++ + ++++
  CCD23677.1 376 LDFSGLDDNEEMIRNLYKISLSQYlNNAEIESSETLLTQEYGLGNSVDVMRSK 428
                 55555678899************98888888888**********988877655 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00024
       SPO22  41 niGksllskkkyeeavkWLqraldilekqesesksssdlselrlsvlrllarayleldqeesyekalkavell..qkeygkkehpsllllklkill... 134
                 ++G+  ++k++ +++ k+L++al+ l     +s+ +   s++ +s+   la +y    +  + e+a k+ + +  ++ + ++++ sl +l lk  +   
  CCD23677.1 597 EMGVLYFKKNELSKSKKYLKKALESLR----ASNMT---SKMAFSIQMNLAHTYR---KLGENERAIKCFKAVleESGHDADIYCSLGFLYLKTNQlek 685
                 3444445999999999**********9....44444...789*************...58888888888888855445555788888888888776667 PP

       SPO22 135 .....kreadeeeieealeemi 151
                      +++ + +   + ++e++
  CCD23677.1 686 avdylHNSLSLKPTNNSAQELL 707
                 7777744444444444444444 PP

>> DUF3439  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   3.3    0.0013         1      47      92 ..     171     216 ..     157     228 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
     DUF3439  47 ttttttttttttmpttttlptttkmsmvkvplvppeafgrvmnaca 92 
                 ttttt tttt t  t++ +  t   s+ k+ l   +a+ + m   a
  CCD23677.1 171 TTTTTLTTTTRTTATSAEIDYTDLTSIEKLRLWRHDALMQHMYRTA 216
                 3444445555566666667788888898999888888877776655 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.88   6.9e+02     109     151 ..     259     301 ..     207     303 .. 0.72
   2 ?   -3.1   0.0         7   5.4e+03      43      62 ..     497     518 ..     492     528 .. 0.73
   3 ?   -3.5   0.0       9.3   7.2e+03      38      61 ..     526     549 ..     515     551 .. 0.83
   4 ?    7.8   1.5    0.0032       2.5      13      77 ..     609     671 ..     600     695 .. 0.74
   5 ?   -0.7   0.0       1.3   9.9e+02      39      78 ..     670     709 ..     665     728 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.88
                 HHHHHHHHHHHHHHHHHTT-HHHHHHHHCTS-GGGT.TTT--H CS
        RPN7 109 werknrlkvyeGlallairkfkeAaellldilstftskellsy 151
                  + +  ++   Gl l +  +f +A + + ++++  tske ++ 
  CCD23677.1 259 ATSNVICRYLMGLCLFKLERFDDALDIVGETNPFATSKEKIDV 301
                 55555588888999999999**999999999999998887765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7
                 HHHHHHCT-HHHHHHHHHT..C CS
        RPN7  43 aehYlkigdleeAlkaysr..i 62 
                 a +Y++  ++  A k++s+  i
  CCD23677.1 497 ATYYMSLNNIPMARKYFSKasI 518
                 7789999999999998888444 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 9.3
                 HHHHHHHHHHHCT-HHHHHHHHHT CS
        RPN7  38 akldlaehYlkigdleeAlkaysr 61 
                 a+l +a+ ++  g++++A+ ays 
  CCD23677.1 526 AWLGFAHTFALEGEHDQAISAYST 549
                 66677888899999999*999986 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0032
                 HHHHHHHHHHHHHHH.HTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC--SHHHHHHHHH CS
        RPN7  13 ekeleeLdaelkdak.enlgkeeirrakldlaehYlkigdleeAlkaysrireyctslkhkidmll 77 
                  k  + L++ l+  + +n ++      + +la+ Y k g+ e A+k++++++e++   +h +d++ 
  CCD23677.1 609 SKSKKYLKKALESLRaSNMTSKMAFSIQMNLAHTYRKLGENERAIKCFKAVLEES---GHDADIYC 671
                 55566788888888867777777778899*******************9998863...44444444 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.3
                 HHHHHHHHHHCT-HHHHHHHHHTCCCC--SHHHHHHHHHH CS
        RPN7  39 kldlaehYlkigdleeAlkaysrireyctslkhkidmlln 78 
                 +  l+  Ylk+ +le+A+ ++   +    + ++  ++ll+
  CCD23677.1 670 YCSLGFLYLKTNQLEKAVDYLHNSLSLKPTNNSAQELLLH 709
                 4556677888888888888777655555444555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.50
# Mc/sec: 4698.35
//
Query:       CCD23678.1  [L=401]
Description: hypothetical protein NDAI_0C00170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-22   77.9   8.0    2.1e-06   28.3   0.6    5.6  5  WD40           WD domain, G-beta repeat
    1.7e-06   28.2   1.5       0.78   10.1   0.0    4.8  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
     0.0015   17.2   0.4       0.16   10.6   0.0    2.7  3  Nup160         Nucleoporin Nup120/160
  ------ inclusion threshold ------
      0.036   12.8   2.9        3.3    6.4   0.4    3.4  4  Nucleoporin_N  Nup133 N terminal like
      0.082   13.8   0.1       0.29   12.0   0.0    1.8  2  EF-hand_11     EF-hand domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.1e-07    0.0018       2      38 .]      32      67 ..      31      67 .. 0.90
   2 !   16.3   0.3   3.7e-06     0.013       2      37 ..      72     119 ..      71     120 .. 0.88
   3 !   28.3   0.6     6e-10   2.1e-06       1      38 []     124     162 ..     124     162 .. 0.94
   4 ?   -2.3   0.0       2.9     1e+04      23      36 ..     249     262 ..     246     263 .. 0.76
   5 !   13.8   0.0   2.3e-05     0.084       5      38 .]     280     316 ..     276     316 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.1e-07
                EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                +++ ++ +H  sv +l  + ++++l+sGs D ++ri+d
  CCD23678.1 32 TPIFHFQAHsLSVKCL--DVSKRYLVSGSNDEHIRIYD 67
                57899****655****..999****************8 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 3.7e-06
                 EEEEEEESS.SSEEEEE...........EETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtsla...........fspdgawlasGsdDgtvriW 37 
                 + l+tl +H +s+t l+             ++++wl+s+s+D+++ iW
  CCD23678.1  72 KELGTLLAHqGSITNLKfsktkhgstegEGSNNKWLLSASEDHKIIIW 119
                 67889999*888****9889999998888888899************* PP

  == domain 3  score: 28.3 bits;  conditional E-value: 6e-10
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++ +tl+GH   +++++ +p+++  +s sdD+++r+W+
  CCD23678.1 124 WENFGTLKGHiARINDIDIHPSNRVAISVSDDHSIRLWN 162
                 57889*****999************9999*********8 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 2.9
                 SEEEEE.ETTSEEEE CS
        WD40  23 awlasG.sdDgtvri 36 
                  +++ G s Dg++ +
  CCD23678.1 249 EYICVGiS-DGNILF 262
                 57778899.999976 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 2.3e-05
                 EEEESS.SSEEEEE..EETTSSEEEE.EETTSEEEEEE CS
        WD40   5 rtltGH.ssvtsla..fspdgawlas.GsdDgtvriWd 38 
                  +l GH + v +++   +  g++l+s Gs Dg+v +Wd
  CCD23678.1 280 FSLLGHtNRVKDFKfyQNEFGTYLVSiGS-DGKVVVWD 316
                 67779*888*9998887778888874499.*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00022      0.78      49      91 ..      50      91 ..      30      92 .. 0.83
   2 ?    3.5   0.3     0.024        88      13      74 ..     110     170 ..     103     186 .. 0.79
   3 ?    3.6   0.0     0.023        84      48      87 ..     189     226 ..     170     230 .. 0.82
   4 ?   -1.3   0.0      0.77   2.8e+03      50      65 ..     248     263 ..     245     267 .. 0.81
   5 !    5.6   0.0    0.0055        20      39      87 ..     287     335 ..     280     340 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00022
  ANAPC4_WD40 49 dgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91
                 + + L+ + +d ++r++d ++ k + +l +++ + +t l++++
   CCD23678.1 50 SKRYLVSGSNDEHIRIYDLQKRKELGTLLAHQGS-ITNLKFSK 91
                 5689***************************995.*9999875 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.024
  ANAPC4_WD40  13 atedgellvfRl.ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvh 74 
                  a+ed ++++ R+ ++++  tl  +++  +++++  +p++++   + +d ++rl +  + k   
   CCD23678.1 110 ASEDHKIIIWRVkDWENFGTL--KGHIARINDIDIHPSNRVAISVSDDHSIRLWNLMTVKKAA 170
                  789999999999566666666..89999************9999999999*998877665544 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.023
  ANAPC4_WD40  48 pdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  +dg+++ava   +++ ++  +++kv  +++++++ +++ +
   CCD23678.1 189 KDGEFFAVALL-NKILIYRTSTAKVHCEIDIEKK-TIMHM 226
                  6999****997.6899*********999999998.47766 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.77
  ANAPC4_WD40  50 gklLavaysdgevrll 65 
                   + ++v++sdg++ ++
   CCD23678.1 248 QEYICVGISDGNILFY 263
                  56899******99765 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.0055
  ANAPC4_WD40  39 sevrsLaWkpd..gklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  ++v+++++ ++  g+ L+   sdg+v + d+++ + +  +++++    +cl
   CCD23678.1 287 NRVKDFKFYQNefGTYLVSIGSDGKVVVWDMKDRNQIAVYDCGER--LNCL 335
                  667777775554489*************************99988..5666 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.28     1e+03     226     255 ..      47      76 ..      39     126 .. 0.46
   2 !   10.6   0.0   4.6e-05      0.16     229     267 ..     145     181 ..     133     211 .. 0.86
   3 !    3.9   0.0    0.0047        17     230     259 ..     300     329 ..     286     369 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.28
                 ...TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 226 veigqtylfalsrdgkLrvWnlltgkclat 255
                  ++ + yl++ s d  +r+ +l+  k l t
  CCD23678.1  47 LDVSKRYLVSGSNDEHIRIYDLQKRKELGT 76 
                 555555666666666666666555443333 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 4.6e-05
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatidllrdeeaqde 267
                  + ++ ++s d+ +r+Wnl t k +a+  l   +++q+ 
  CCD23678.1 145 SNRVAISVSDDHSIRLWNLMTVKKAAVLKLR--KYSQNG 181
                 578899*********************9999..777765 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.0047
                 TTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclatidll 259
                  tyl+++ +dgk+ vW+ ++  ++a+ d+ 
  CCD23678.1 300 GTYLVSIGSDGKVVVWDMKDRNQIAVYDCG 329
                 599**********************99997 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1    0.0083        30     210     235 ..      48      73 ..      30      88 .. 0.81
   2 ?    6.4   0.4   0.00091       3.3     208     269 ..      88     161 ..      78     163 .. 0.69
   3 ?    3.1   0.1    0.0092        33     204     235 ..     137     168 ..     135     185 .. 0.81
   4 ?   -1.3   0.0       0.2   7.1e+02     216     241 ..     303     324 ..     292     347 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.0083
                    ECCTCEEEEEETTSEEEEEEEETTCE CS
  Nucleoporin_N 210 dssrrilytlsskgvirvydlsasng 235
                    d s+r l++ s++  ir+ydl+++ +
     CCD23678.1  48 DVSKRYLVSGSNDEHIRIYDLQKRKE 73 
                    45669*****************6654 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00091
                    EEECCT...........CEEEEEETTSEEEEEEEETTCEE-EEEEEE.EHHHHHHHH.HHSCHTTTCGCTTT-E CS
  Nucleoporin_N 208 ridssr...........rilytlsskgvirvydlsasngesslksdi.dirqilleaitesliasaplaskslk 269
                    + ++++           ++l ++s++++i ++++  +++  +lk++i  i++i ++ ++  +i+ +++ s++l+
     CCD23678.1  88 KFSKTKhgstegegsnnKWLLSASEDHKIIIWRVKDWENFGTLKGHIaRINDIDIHPSNRVAISVSDDHSIRLW 161
                    55555555555666677******************999966666665145566565577777777776666665 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.0092
                    EEEEEEECCTCEEEEEETTSEEEEEEEETTCE CS
  Nucleoporin_N 204 ivqlridssrrilytlsskgvirvydlsasng 235
                    i  + i++s r  +++s ++ ir ++l +  +
     CCD23678.1 137 INDIDIHPSNRVAISVSDDHSIRLWNLMTVKK 168
                    667899********************997655 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.2
                    EEEEETTSEEEEEEEETTCEE-EEEE CS
  Nucleoporin_N 216 lytlsskgvirvydlsasngesslks 241
                    l+++ s+g++ v+d+      +++  
     CCD23678.1 303 LVSIGSDGKVVVWDMKD----RNQIA 324
                    77888999999999983....33444 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     8e-05      0.29      23      77 ..     121     176 ..     107     183 .. 0.81
   2 ?   -2.1   0.0       2.1   7.4e+03      25      37 ..     341     353 ..     335     358 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8e-05
                 HHHHHHH-TT-SSEE-HHHHHHHHHHHT--.--HHHHHHHHHTS-B-TTS-EEHHH CS
  EF-hand_11  23 vqefenfdtlksntvsreefraictrrvqi.ltdeqfdrlwselpvnakgrlkyqd 77 
                 v+++enf tlk      +++    + rv i ++d+   rlw+ + v+    lk + 
  CCD23678.1 121 VKDWENFGTLKGHIARINDIDIHPSNRVAIsVSDDHSIRLWNLMTVKKAAVLKLRK 176
                 689*********98888999888888888846789999********9999888765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.1
                 HHHHH-TT-SSEE CS
  EF-hand_11  25 efenfdtlksntv 37 
                   e++dt+k  ++
  CCD23678.1 341 TVEKYDTMKKRSL 353
                 47999***98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1652  (0.0921412); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2955.82
//
Query:       CCD23679.1  [L=1246]
Description: hypothetical protein NDAI_0C00180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-10   41.5   0.2    3.9e-05   23.9   0.0    2.8  2  Ank        Ankyrin repeat
    3.2e-10   40.5   0.1    1.1e-09   38.8   0.1    1.9  1  Ank_2      Ankyrin repeats (3 copies)
    3.4e-10   40.2   0.1    1.1e-09   38.7   0.1    1.9  1  Ank_4      Ankyrin repeats (many copies)
    1.5e-07   31.2   0.3    0.00053   20.2   0.0    3.1  2  Ank_3      Ankyrin repeat
    7.2e-07   29.2   5.5    7.2e-07   29.2   5.5    3.5  2  TIG        IPT/TIG domain
     0.0021   18.3   0.0     0.0021   18.3   0.0    3.8  4  Ank_5      Ankyrin repeats (many copies)
  ------ inclusion threshold ------
      0.025   14.6   0.6       0.14   12.2   0.0    2.6  2  RHD_dimer  Rel homology dimerisation domain
       0.29   11.6   3.0       0.44   11.0   1.1    2.3  2  DUF3417    Protein of unknown function (DUF3417)


Domain annotation for each model (and alignments):
>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   1.4e-05     0.032       2      31 ..     868     898 ..     868     899 .. 0.93
   2 !   23.9   0.0   1.8e-08   3.9e-05       2      30 ..     901     931 ..     900     933 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+T LHlA++ g  + +++L+ +GA ++++d
  CCD23679.1 868 GRTLLHLASHKGYFHLCSNLIyKGARIDSRD 898
                 99*******999999******88**999998 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 1.8e-08
                 SBBHHHHHHHHTTHHHHHHHH.TT.TSTTCB CS
         Ank   2 GnTPLHlAatngkkriiklLL.hG.Anlnal 30 
                 G+TPLH+A+  g+  ii+lL  +  A++n++
  CCD23679.1 901 GFTPLHYACISGNIKIIELLMkCNvADINSK 931
                 9********667777***99988899*9976 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.1   4.8e-13   1.1e-09      15      82 ..     850     931 ..     839     932 .. 0.75

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 4.8e-13
       Ank_2  15 lLlegadpn......k.ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlek.gadinlk 82 
                  +++++d +      +  g+t Lh+A ++g+ ++++ L+ +       d+ g tpLhyA+ sg+++i++lL+++  adin k
  CCD23679.1 850 SIIKKSDSSynlsirDnVGRTLLHLASHKGYFHLCSNLIYKgaridsRDSFGFTPLHYACISGNIKIIELLMKCnVADINSK 931
                 4554433323232332589********************767675555588*********************5547899986 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.1   4.7e-13   1.1e-09       1      54 [.     868     920 ..     868     921 .. 0.97

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 4.7e-13
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 ++t+Lh a ++g + l+  L++kga i+ + ++ G+t+lh+A+  gn++i++lL
  CCD23679.1 868 GRTLLHLASHKGYFHLCSNLIYKGARIDSR-DSFGFTPLHYACISGNIKIIELL 920
                 589***************************.*********************98 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0025       5.7       2      29 ..     868     894 ..     867     896 .. 0.89
   2 !   20.2   0.0   2.4e-07   0.00053       2      26 ..     901     924 ..     900     930 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0025
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+t+LhlA + g + ++  L+  kga +
  CCD23679.1 868 GRTLLHLASHKGYFHLCSNLIY-KGARI 894
                 9**************9*99999.78766 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2.4e-07
       Ank_3   2 GetpLhlAarsgnleivkfLlenkg 26 
                 G tpLh+A+ sgn++i+++L + ++
  CCD23679.1 901 GFTPLHYACISGNIKIIELLMK-CN 924
                 89*************9999998.43 PP

>> TIG  IPT/TIG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.2      0.94   2.1e+03      29      61 ..     479     514 ..     440     537 .. 0.64
   2 !   29.2   5.5   3.2e-10   7.2e-07       1      79 [.     669     746 ..     669     752 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.94
         TIG  29 nssdssvtiggtpctvta...svssttlvcttPpgp 61 
                 +ss+s+++  ++++++++     +++t+ + +P+ +
  CCD23679.1 479 SSSSSQILNINMATNNNKiytNNNNNTMLFPSPNSV 514
                 444444444555555554444666666666666666 PP

  == domain 2  score: 29.2 bits;  conditional E-value: 3.2e-10
         TIG   1 PvissisPnsgsasgGttititGtnFgtnssdssvtiggtpctvtasvssttlvcttPpgp.sgllnvsvlvdg.aqlrsd 79 
                 P+++ i P++gs++gG  iti G+ F   ++   +++g++ +  ++ +++tt+v ++Pp + +g++ v+vl+ + ++  ++
  CCD23679.1 669 PIVQRIIPSQGSINGGIEITILGSKF---KQGQIIKFGENIALSSQCWNETTMVTYLPPSSvAGQVYVTVLNSNnNNNNNN 746
                 89************************...*************9999************999777**********5333333 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.5   4.3         8   1.8e+04       7      18 ..     739     750 ..     737     751 .. 0.66
   2 ?    3.4   0.0     0.046     1e+02      13      32 ..     865     884 ..     859     891 .. 0.73
   3 !   18.3   0.0   9.2e-07    0.0021       2      55 ..     888     941 ..     887     942 .. 0.78
   4 ?   -1.6   1.0       1.7   3.8e+03      35      52 ..    1048    1068 ..    1041    1071 .. 0.58

  Alignments for each domain:
  == domain 1  score: -7.5 bits;  conditional E-value: 8
       Ank_5   7 advnrldgggnt 18 
                 +++n+++++gnt
  CCD23679.1 739 NNNNNNNNNGNT 750
                 566777777776 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.046
       Ank_5  13 dgggntpLhvAakygaadvv 32 
                 d+ g t Lh+A+++g++ ++
  CCD23679.1 865 DNVGRTLLHLASHKGYFHLC 884
                 44456**********98665 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 9.2e-07
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldl 55 
                 + +g a+++ +d +g+tpLh+A+  g+  +++lL+  + ad+n +  +Glta dl
  CCD23679.1 888 IYKG-ARIDSRDSFGFTPLHYACISGNIKIIELLMkCNVADINSKICNGLTARDL 941
                 5567.9999**************************55555555444444888886 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.7
       Ank_5   35 Ll..argadlnltdsrG.lta 52  
                  L+  ++ +++n  ++++ +t+
  CCD23679.1 1048 LIaaNNTVNNNNNNNNNnNTL 1068
                  555555555555555554444 PP

>> RHD_dimer  Rel homology dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3       1.6   3.5e+03      40      58 ..     622     640 ..     609     657 .. 0.49
   2 ?   12.2   0.0   6.4e-05      0.14       5      49 ..     674     718 ..     670     734 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.6
   RHD_dimer  40 gkevWeaeaefskedvhkq 58 
                 ++++ + +++++ ++ h+q
  CCD23679.1 622 QQQQMQMQMQMQVQQAHQQ 640
                 2222333333333333333 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 6.4e-05
   RHD_dimer   5 lsktsgsveGgeelillcekvqkddikvrFleeee.gkevWeaeae 49 
                 +  ++gs++Gg e+ +l++k+++ +  + F e+    ++ W+++  
  CCD23679.1 674 IIPSQGSINGGIEITILGSKFKQ-GQIIKFGENIAlSSQCWNETTM 718
                 556799****************9.889******999999**98765 PP

>> DUF3417  Protein of unknown function (DUF3417)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.8   4.1e+03      46      90 ..     261     305 ..     258     311 .. 0.82
   2 ?   11.0   1.1    0.0002      0.44      17     103 ..     569     660 ..     559     664 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.8
     DUF3417  46 Leevsqerleelaedeeflarleavveefeeyleektwfqkkaee 90 
                 L++ +q+ +e+l + e+f+ ++e+ +++f++    ++ +++++++
  CCD23679.1 261 LNQYPQDIIEKLLHLEAFVVSIENNTNTFKQIYVCDRCVKREQRR 305
                 8889999999*******************9988887777776644 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0002
     DUF3417  17 wswneeareLFksldpelweevghnPvklLeevsqerleelaedeeflarleavveef.eeyleektwfqkka......eeekkeaiAYFsaEf 103
                 +s++++  ++ +++d+++  + ++n  ++ + v+++r+++  +d++f +++++  ++  + +++ +   q ++        +k+++ A++saEf
  CCD23679.1 569 FSFSSSSISMNNNIDRNMNIN-NNNNNNVTNFVTNKRVRHNIDDDQFPQQYQQQQQQQmQMQMQMQ-VQQAHQqnplttLYPKTPSFAHLSAEF 660
                 778888888999999998777.7788899999*******************987765404444444.333333457877778899999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2231  (0.124435); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.46
# Mc/sec: 8218.83
//
Query:       CCD23680.1  [L=493]
Description: hypothetical protein NDAI_0C00190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.7e-59  199.4   1.8    1.6e-58  198.5   1.8    1.4  1  ORC5_C         Origin recognition complex (ORC) subunit 5 C-t
      1e-11   45.5   0.0    1.8e-11   44.7   0.0    1.3  1  AAA_16         AAA ATPase domain
  ------ inclusion threshold ------
      0.025   14.6   0.3       0.14   12.3   0.1    2.2  2  TRADD_N        TRADD, N-terminal domain
      0.029   14.6   0.0      0.091   13.0   0.0    1.9  1  AAA_22         AAA domain
      0.046   13.1   0.1      0.079   12.3   0.1    1.3  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
      0.069   13.2   0.5        1.3    9.1   0.5    2.7  1  AAA_14         AAA domain


Domain annotation for each model (and alignments):
>> ORC5_C  Origin recognition complex (ORC) subunit 5 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.5   1.8   5.3e-62   1.6e-58       1     285 []     208     488 ..     208     488 .. 0.84

  Alignments for each domain:
  == domain 1  score: 198.5 bits;  conditional E-value: 5.3e-62
      ORC5_C   1 ihFppytreevleils...kekps.............ngeeeeeeataklyerFvslvydslvkptardipelrsiceklWprFvaPildgelkpedfs 83 
                 i Fp+y+ +e++eil    +   +             +    ++e++ ++  +F++l+++s+ ++t++di +++++++  W+ +v  +++ +++  +  
  CCD23680.1 208 IIFPRYNIDELIEILIfsrS---KdllmnykftekcnELLIFNNEEKLSIVINFIQLIIQSFNSYTGNDIYAINDLIDFKWEIYVDGMNSDNIS--NPL 301
                 67**************5540...45566666777777889999999***********************************************7..89* PP

      ORC5_C  84 rllaanralfrdqgesalaeelvektaasssassasskssssklpeLpylaklLLiAAYLASynpprlDlrlFsktsgkskkrrkrrkgssqkskekak 182
                 +l+++  ++f++++ s  +e+++e+++        s++ +++++++++ ++k+LLiAAYL+Sy +pr D  lFs +s+ +  +  r++++ +       
  CCD23680.1 302 ALYKKTLKIFTSTDCSLVQENDNEQQE--------SDTVTTTTTYSISKMSKYLLIAAYLCSYLEPRFDSFLFSLKSELK-TG--RSSTGRR------- 382
                 ************988776543322222........23344567899*******************************333.33..2222222....... PP

      ORC5_C 183 skkrkisqkllgPkaFpLeRllAIfqailpeeeaepseeess..e....tlsvdvlsqiatLvslrllvrtsaaagdkldgsekwrvnVswevirelAr 275
                  kk++i+ ++l+++ F++eRllAIfq i+p e + +s + +s  e    +++v+v++++a+L sl+ll++t++   d l+++ kw+vnV+we+i+e+A+
  CCD23680.1 383 -KKKDINPRFLQASLFSIERLLAIFQNIYPMEMNWKSGSLASlgEnsliRSNVEVFQNLAELDSLKLLATTKNI--DLLNHKNKWKVNVPWEIIEEVAK 478
                 .3345*************************9977665555556527899**********************965..*********************** PP

      ORC5_C 276 svgfeleeYL 285
                 sv+f++++Y+
  CCD23680.1 479 SVDFDINQYF 488
                 *********6 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   6.1e-15   1.8e-11       4     164 ..      10     171 ..       8     176 .. 0.77

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 6.1e-15
      AAA_16   4 GReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde....aesaeleawr 98 
                  R+ ++e L+s+l +    +p ++++ G++++GK+  +++ +++  +d  + ++ k  +l   ++  +++qa+ar ++ + l ++    +++ + +  +
  CCD23680.1  10 FRDYQVELLESYLLDDPNVSPLNLFIQGYKATGKTYTLEKYFQYHPDD-LLHAWIKPLEL---VSWKPFIQAIAR-TVQETLQTKypsvSNN-DDRNEK 102
                 59************999*************************666666.66688888888...555667777744.6666666664431333.444444 PP

      AAA_16  99 ekleealaavpelagaea....srllellkrll.allsrderplvlvlDdlqwadeaslqllaaLlrlles 164
                 e+ ee+l+  + l+ +e+    + l   l++ + al+++ ++ ++l+lD ++ + + + ql++++++l+e 
  CCD23680.1 103 EEDEENLKRLDTLSVEEPyllmNFLETILSKYAtALMEP-RS-FYLILDGFDSFHDLDTQLIQTIFKLSEI 171
                 555666668888888888889888888888888444444.55.**********************999876 PP

>> TRADD_N  TRADD, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   4.5e-05      0.14       9      45 ..     169     205 ..     164     212 .. 0.90
   2 ?   -1.5   0.0      0.82   2.5e+03      10      41 ..     220     248 ..     211     261 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.5e-05
     TRADD_N   9 leiLKihdsdpqLivqlkFveveaCrrFLesYkegal 45 
                  eiL + +  +qL ++lkF++  +   FL+ Y +  l
  CCD23680.1 169 SEILNVSNGGQQLKIKLKFIHIIQDSSFLNRYTSYCL 205
                 69******************************98766 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.82
     TRADD_N  10 eiLKihdsdpqLivqlkFveveaCrrFLesYk 41 
                 eiL i++  + L ++ kF+e  +C++ L   +
  CCD23680.1 220 EIL-IFSRSKDLLMNYKFTE--KCNELLIFNN 248
                 666.5666677888888864..6777665544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0     3e-05     0.091       8     103 ..      33     154 ..      29     193 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst..sskdllrellralglelka...........................erlssee 77 
                 l++ G + tGKT++l+++++ +         ++++++  ++ ++  s+k + ++++r +++ l +                           +  +   
  CCD23680.1  33 LFIQGYKATGKTYTLEKYFQYH---------PDDLLHAWIKPLElvSWKPFIQAIARTVQETLQTkypsvsnnddrnekeedeenlkrldtlSVEEPYL 122
                 67788899************99.........888885555555555**************999999988888877777666666666664432222222 PP

      AAA_22  78 llealeqalrarav......ielliiDEaqhl 103
                 l++ le  l+++a+         li+D ++ +
  CCD23680.1 123 LMNFLETILSKYATalmeprSFYLILDGFDSF 154
                 22334444444444444554345666666666 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.6e-05     0.079     121     188 ..     306     373 ..     297     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
                    TSEEEEEEEGGGG-S-SSSSB-TTS-----SHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEESTTS CS
  GDP_Man_Dehyd 121 kvrfyqaStsEvYGkvqevpqtEttpfyPrsPYaaaKlyadwivvnyreayglfavngilfnhesprr 188
                    k+  +++St+    + ++  q+E+  ++ +  Y+++K++++ ++ +y  +y  +   + lf  +s  +
     CCD23680.1 306 KTLKIFTSTDCSLVQENDNEQQESDTVTTTTTYSISKMSKYLLIAAYLCSYLEPRFDSFLFSLKSELK 373
                    45556777777777778899*******************************99999999998888765 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.5   0.00043       1.3       5      27 ..      33      55 ..      30     171 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00043
      AAA_14  5 lvitGaRrvGKTtllkqlikell 27
                l+i+G + +GKT+ l+++++ + 
  CCD23680.1 33 LFIQGYKATGKTYTLEKYFQYHP 55
                689****************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3202.86
//
Query:       CCD23681.1  [L=276]
Description: hypothetical protein NDAI_0C00200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-17   61.6   1.2    1.6e-16   60.2   1.2    1.8  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   1.2   8.9e-21   1.6e-16       1      62 [.      14      79 ..      14      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 8.9e-21
                HHHHHHTSSTT....G-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHH CS
        DnaJ  1 dyYeiLgvskd....asedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqY 62
                d+Ye L+++       s +eIk++Yr+lalkyHPDk+p+d++  +kF+ei+ A+++L+d++  ++Y
  CCD23681.1 14 DLYEDLEITDAltrrISIQEIKRQYRTLALKYHPDKHPNDSNLIHKFHEISIATNILTDEKLSEEY 79
                5788888777733335699****************************************9987777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1953.32
//
Query:       CCD23682.1  [L=316]
Description: hypothetical protein NDAI_0C00210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-37  126.0  19.8      7e-08   32.0   0.2    5.6  5  PPTA        Protein prenyltransferase alpha subunit repeat
  ------ inclusion threshold ------
      0.025   14.8   0.0        0.6   10.3   0.0    2.4  2  UvrB_inter  UvrB interaction domain


Domain annotation for each model (and alignments):
>> PPTA  Protein prenyltransferase alpha subunit repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   4.5e-09   4.1e-05       4      27 ..      56      79 ..      55      80 .. 0.94
   2 !   29.7   0.5   4.1e-11   3.6e-07       1      27 [.      97     123 ..      97     124 .. 0.96
   3 !   32.0   0.2   7.8e-12     7e-08       4      26 ..     136     158 ..     133     159 .. 0.90
   4 !   28.5   0.6   9.7e-11   8.7e-07       1      27 [.     167     193 ..     167     194 .. 0.95
   5 !   24.0   0.1   2.4e-09   2.2e-05       1      28 []     205     232 ..     205     232 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.5e-09
                HHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA  4 ltekliekdpkNYsaWnyRrwlle 27
                lt+k+i++ p  Y++WnyR+ ++e
  CCD23682.1 56 LTSKVIQLAPAYYTIWNYRYEIIE 79
                8********************998 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 4.1e-11
                 HHHHHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwlle 27 
                 EL + +++  ++pkNY++W+yR+ +++
  CCD23682.1  97 ELSWLDEITLNNPKNYQIWSYRQAIIK 123
                 9**********************9986 PP

  == domain 3  score: 32.0 bits;  conditional E-value: 7.8e-12
                 HHHHHHHH-TT-CHHHHHHHHHH CS
        PPTA   4 ltekliekdpkNYsaWnyRrwll 26 
                  ++ +i++d kNY++W+yR+w++
  CCD23682.1 136 IISMMIDDDTKNYHVWSYRKWCI 158
                 6889******************8 PP

  == domain 4  score: 28.5 bits;  conditional E-value: 9.7e-11
                 HHHHHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwlle 27 
                 EL +++++i++d  N+saW +R+++ +
  CCD23682.1 167 ELTFCDNFIQRDVYNNSAWTHRMFVWK 193
                 9***********************976 PP

  == domain 5  score: 24.0 bits;  conditional E-value: 2.4e-09
                 HHHHHHHHHHH-TT-CHHHHHHHHHHCH CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwllek 28 
                 EL++ +++ie+ p+N s+W y r+l e+
  CCD23682.1 205 ELNYLKEKIELVPQNISVWTYLRGLYEN 232
                 9***********************9985 PP

>> UvrB_inter  UvrB interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   6.7e-05       0.6      36      89 ..      55     110 ..      41     112 .. 0.77
   2 ?    1.8   0.0      0.03   2.7e+02      51      67 ..     297     313 ..     287     316 .] 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.7e-05
  UvrB_inter  36 rvrGdtveifpasaeevairieffgdeiesireidpltgkslek..leeitifPak 89 
                 r+  +++++ pa++    +r e+ + ei++++e d+++   +e   l+eit+   k
  CCD23682.1  55 RLTSKVIQLAPAYYTIWNYRYEIIESEIKKMSEPDSTNFLNKELswLDEITLNNPK 110
                 778899*******9888****************99987543332337777776555 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.03
  UvrB_inter  51 evairieffgdeiesir 67 
                   ++ri+f++ ++++++
  CCD23682.1 297 YDPVRINFWNHKLKKLT 313
                 4699*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2361.04
//
Query:       CCD23683.1  [L=91]
Description: hypothetical protein NDAI_0C00220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-18   65.1   0.1    4.9e-18   64.8   0.1    1.1  1  DUF1748   Fungal protein of unknown function (DUF1748)
  ------ inclusion threshold ------
      0.054   12.5   0.0      0.067   12.1   0.0    1.0  1  FAM178    Family of unknown function, FAM178


Domain annotation for each model (and alignments):
>> DUF1748  Fungal protein of unknown function (DUF1748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.1   5.5e-22   4.9e-18       3      69 .]       5      68 ..       3      68 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 5.5e-22
     DUF1748  3 rlthyafDavLvSvvlAgvkrttgltlnsdkitdkdikkwvdkYLgvGEwvmDqsvavmgsSswFer 69
                +++h++fD++L++++lA+++r tgl l+++k    d+++++  YL++GE ++ ++v+++++S  F++
  CCD23683.1  5 SIIHIGFDMTLIAMLLAAIRRDTGLILKYEK---FDFSTVIYGYLNWGEHWYTKLVNYCKKSPKFRK 68
                79*****************************...8******************************86 PP

>> FAM178  Family of unknown function, FAM178
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.5e-06     0.067     281     327 ..      15      62 ..      11      69 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.5e-06
      FAM178 281 lLlellcrisLdvqLr.llpkvdlqqlllklLenikdWptklpelcla 327
                 l+ +ll+ i  d++L  +  k+d++ +++  L++ + W tkl + c+ 
  CCD23683.1  15 LIAMLLAAIRRDTGLIlKYEKFDFSTVIYGYLNWGEHWYTKLVNYCKK 62 
                 34456788999****956789************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 702.04
//
Query:       CCD23684.1  [L=340]
Description: hypothetical protein NDAI_0C00230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.6e-12   45.2   0.1     0.0055   17.5   0.0    5.4  6  WD40         WD domain, G-beta repeat
      6e-06   26.5   0.0       0.29   11.5   0.0    3.5  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    9.3e-06   25.1   0.0    0.00011   21.5   0.0    2.3  2  Lactonase    Lactonase, 7-bladed beta-propeller


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00037       2.2       6      38 .]      18      54 ..      13      54 .. 0.75
   2 !   17.5   0.0   9.2e-07    0.0055       3      38 .]     104     140 ..     102     140 .. 0.88
   3 ?   -2.2   0.0       1.6   9.6e+03      14      23 ..     156     165 ..     152     168 .. 0.78
   4 ?    3.4   0.0     0.027   1.6e+02      13      30 ..     215     233 ..     198     245 .. 0.72
   5 !    8.0   0.0   0.00097       5.8      15      38 .]     266     289 ..     244     289 .. 0.82
   6 ?   -1.8   0.0       1.2     7e+03      15      29 ..     315     329 ..     304     336 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00037
                EEESS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  6 tltGH.ss...vtslafspdgawlasGsdDgtvriWd 38
                +++ + +    +ts+ f+++g++l+++s + + +++d
  CCD23684.1 18 SFKVQeKEltpITSIGFDDYGQYLLTASANDNMHLYD 54
                55555433444**************999888777776 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 9.2e-07
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                  lr + GH+  v++++ sp ++ ++s+s+D +vr+Wd
  CCD23684.1 104 YLRYFMGHDAlVSDIQMSPLNDTFLSASYDESVRLWD 140
                 566778**5579************************9 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.6
                 EEEEEETTSS CS
        WD40  14 tslafspdga 23 
                  ++a++p+g 
  CCD23684.1 156 VCIAYDPSGL 165
                 3999**9985 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.027
                 EEEEEEETTSSEEE.EEET CS
        WD40  13 vtslafspdgawla.sGsd 30 
                  + l fs +g++l+ s+s+
  CCD23684.1 215 WNKLEFSNNGKYLLvSSSM 233
                 56788*******8625554 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.00097
                 EEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40  15 slafspdgawlasG.sdDgtvriWd 38 
                 s +f pdg++++ G ++ g++ +W+
  CCD23684.1 266 SACFTPDGDFVL-GtDYEGKIALWN 289
                 5679********.8346****9998 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 1.2
                 EEEEETTSSEEEEEE CS
        WD40  15 slafspdgawlasGs 29 
                  +af+p  +++++++
  CCD23684.1 315 TIAFNPKYSMFVTAD 329
                 688999999998874 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   4.9e-05      0.29      29      80 ..      18      68 ..       2      86 .. 0.83
   2 ?   -1.3   0.0      0.47   2.8e+03      37      70 ..     111     144 ..     104     160 .. 0.79
   3 !   10.2   0.0   0.00012      0.73      34      77 ..     208     251 ..     191     256 .. 0.81
   4 ?   -1.8   0.0      0.65   3.9e+03      45      70 ..     268     293 ..     266     308 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.9e-05
  ANAPC4_WD40 29 vwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80
                  +++ ++ke   ++s+ +   g+ L  a ++ +++l+d+ s + ++++  k+
   CCD23684.1 18 SFKV-QEKELTPITSIGFDDYGQYLLTASANDNMHLYDSVSCRFINTIASKK 68
                 3444.7888899*******************************999987765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.47
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  +d  v++++ +p +  +  a  d +vrl d    
   CCD23684.1 111 HDALVSDIQMSPLNDTFLSASYDESVRLWDLRVS 144
                  6777888888888888888888999999887654 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00012
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                  ++k+  + ++L+++++gk L v+ s g+  ++da +g  + +l+
   CCD23684.1 208 NSKKFDQWNKLEFSNNGKYLLVSSSMGKQLIFDAFDGSQLFELT 251
                  4455556689************************9999887765 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.65
  ANAPC4_WD40  45 aWkpdgklLavaysdgevrlldaesg 70 
                  ++ pdg +      +g++ l + +++
   CCD23684.1 268 CFTPDGDFVLGTDYEGKIALWNLSDQ 293
                  68899999998999999998887665 PP

>> Lactonase  Lactonase, 7-bladed beta-propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.039   2.4e+02      12      56 ..      13      57 ..       3      97 .. 0.69
   2 !   21.5   0.0   1.9e-08   0.00011      44     208 ..     177     328 ..     158     338 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.039
                .TEEEEEEEETTTS-EEEEEEEEESS---SEEE..-TTSSEEEEEET CS
   Lactonase 12 skgiytlkldtetgkltplelvaelenPsyLal..spdgktlYavne 56
                 k+++++k+  ++++ltp++++   +  +yL +  ++d+ +lY +  
  CCD23684.1 13 FKAVKSFKV--QEKELTPITSIGFDDYGQYLLTasANDNMHLYDSVS 57
                567777788..899999999999999999987733445556665544 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.9e-08
                 E-TTSSEEEEEET.STTTEEEEEEEETTTTEEEEEEEEE.SSS-EEEEEE-TTSSEEEEEETTTTEEEEEEB.TTSEBESECEEEE.....SSTTT-SS CS
   Lactonase  44 lspdgktlYavnetgeeggvsafaidkdsgeltllnkvssegaspchlsvdedgkllavAnYsggsvsvfpldadgslkeasqvlkhegsgpnperqes 142
                 +      lY v++  ++g     +i++++++ t + ++s++ ++   l+ +++gk+l+v++  g ++ + + d        sq+++ +g++p p   e 
  CCD23684.1 177 I-----GLYNVKQL-KNGPFLIIKIQQQTETTTTTTNNSKKFDQWNKLEFSNNGKYLLVSSSMGKQLIFDAFD-------GSQLFELTGTKPFPL-REF 261
                 4.....68999887.9999999****9998888888888899*****************99777776654333.......346788899999995.569 PP

                 TTEEEEEE-TTSSEEEEEETTTTEEEEEEE.-TTS-..EEEEEEEE-STT--EEEEEE-TTSSEEEEE CS
   Lactonase 143 phaHsvvldpdgkfllvpDLGtDrvrvykldkatgk..ltepasvklppgsGPRHlaFhpdgkiaYvv 208
                 +   s+ ++pdg+f+l +D    ++ +++l+++ ++  l+++ ++++ p s PR +aF+p+ +++ ++
  CCD23684.1 262 MDSGSACFTPDGDFVLGTDY-EGKIALWNLSDQISNktLKPQTTIQAVPTSSPRTIAFNPKYSMFVTA 328
                 9999***********99998.57*******99876566999*******************97776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2537.05
//
Query:       CCD23685.1  [L=699]
Description: hypothetical protein NDAI_0C00240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-58  196.4   0.6    1.1e-57  194.9   0.1    2.0  2  AAA_12           AAA domain
    1.8e-52  178.7   2.8    2.1e-52  178.5   0.0    2.5  3  AAA_11           AAA domain
      9e-13   48.8   0.0    3.8e-12   46.7   0.0    2.1  1  AAA_19           AAA domain
      1e-11   44.9   0.0    1.3e-07   31.6   0.0    2.3  2  AAA_30           AAA domain
    1.5e-07   31.4   0.2       0.35   10.6   0.0    3.5  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    9.6e-06   25.3   0.5    3.8e-05   23.3   0.0    2.2  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
    1.8e-05   24.8   0.0    0.00011   22.2   0.0    2.3  1  ResIII           Type III restriction enzyme, res subunit
    0.00013   22.2   0.0     0.0017   18.7   0.0    2.6  1  AAA_22           AAA domain
    0.00023   20.7   0.0     0.0029   17.1   0.0    2.2  2  PhoH             PhoH-like protein
    0.00026   20.9   0.0     0.0039   17.1   0.0    2.7  2  Helicase_RecD    Helicase
    0.00095   19.0   0.2      0.025   14.4   0.0    2.3  2  DEAD             DEAD/DEAH box helicase
      0.002   17.3   0.1       0.35   10.0   0.0    2.5  2  PIF1             PIF1-like helicase
     0.0048   15.9   0.0      0.011   14.7   0.0    1.5  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
     0.0099   15.8   0.2      0.028   14.4   0.2    1.7  1  IL2              Interleukin 2
  ------ inclusion threshold ------
      0.011   16.1   0.1      0.058   13.8   0.0    2.3  2  AAA              ATPase family associated with various cellul
      0.011   15.4   0.0      0.052   13.3   0.0    2.1  1  AAA_24           AAA domain
      0.022   14.6   0.2        0.5   10.3   0.0    2.5  2  MobB             Molybdopterin guanine dinucleotide synthesis
      0.024   14.4   0.0      0.058   13.1   0.0    1.6  1  IstB_IS21        IstB-like ATP binding protein
      0.025   13.8   0.0      0.078   12.2   0.0    1.9  2  DUF2075          Uncharacterized conserved protein (DUF2075)
       0.03   13.4   0.0      0.055   12.5   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
      0.034   12.7   0.0      0.053   12.1   0.0    1.2  1  DUF853           Bacterial protein of unknown function (DUF85
      0.045   14.1   0.0        0.1   13.0   0.0    1.7  1  AAA_16           AAA ATPase domain
      0.067   13.2   0.2       0.24   11.4   0.2    2.3  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      0.072   13.1   0.1        1.4    8.9   0.0    2.8  2  AAA_14           AAA domain
      0.084   12.8   0.0       0.18   11.8   0.0    1.5  1  Flavi_DEAD       Flavivirus DEAD domain
       0.17   12.0   0.0       0.38   10.9   0.0    1.6  1  AAA_33           AAA domain


Domain annotation for each model (and alignments):
>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.5   1.8e+03      38     127 ..     339     431 ..     326     445 .. 0.49
   2 !  194.9   0.1   1.6e-60   1.1e-57       2     198 ..     457     666 ..     456     667 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.5
      AAA_12  38 fYkgkLkdaesvkkrele......aqealeepleplvfidvekseeekekkeksyiNeeEaelvvk..lvekllkkgseeerkkigvitpYraqvell 127
                  Yk+k ++ ++vk+ ++e      +  +     +++v+  +++s++++     +++N+e ++ +++  +++++ ++ + +    i  i+ Y+++++ l
  CCD23685.1 339 SYKDKRESWKEVKELRKElrirerKVINDLILEAKVVVATLHGSSSRDL---CKLYNDESVTSLFDtlIIDEVSQSLEPQ--CWIPLISHYKSDISKL 431
                 5555555555555544443333221222222222333333333333332...4556655555554411334444444444..6788888888877766 PP

  == domain 2  score: 194.9 bits;  conditional E-value: 1.6e-60
      AAA_12   2 erSlferllkke.kekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkrele...aqealeepleplvfidv..............ekseeekekk 82 
                 +++lf+rl++ + ++  +lL++qYRm++eI++f+s+++Y+gkL ++ +v+++ l+     +  e++  pl+++d+              +  +      
  CCD23685.1 457 QTTLFDRLVSIYgDQFRKLLNVQYRMNEEIMEFSSNEMYEGKLLADVTVASHLLSdlsGVDSNEDTDIPLIWYDTqgdefmesvsdsntN--N------ 547
                 789*******999999***********************************999977767777888899999999888888887654321..1...... PP

      AAA_12  83 e..........ksyiNeeEaelvvklvekllkkgseeerkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsnekke 171
                 +          +s++Ne+Ea +v ++vekl+++ + +  + ig+i+pY+aqv+llk+ ++++ +      ie++tvdgfQGrek+viilslVRsn+k e
  CCD23685.1 548 NnnnnnnnplaSSKFNENEALVVKDHVEKLIASNVPQ--ECIGIISPYSAQVNLLKSLIRTDYPL-----IEISTVDGFQGREKEVIILSLVRSNDKFE 639
                 01223456889*************************9..9********************77776.....9**************************** PP

      AAA_12 172 igflkderrlNValTRAkskliivGnk 198
                 +gfl+d rrlNVa+TR k++l++vGn 
  CCD23685.1 640 VGFLSDDRRLNVAMTRPKRQLCVVGNI 666
                 *************************96 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         9   6.2e+03     146     146 ..     114     114 ..      77     176 .. 0.52
   2 !  178.5   0.0   3.1e-55   2.1e-52       1     260 [.     217     446 ..     217     447 .. 0.91
   3 ?   -2.7   0.1       5.9   4.1e+03      71     122 ..     452     521 ..     449     576 .. 0.48

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 9
      AAA_11 146 e 146
                 +
  CCD23685.1 114 T 114
                 1 PP

  == domain 2  score: 178.5 bits;  conditional E-value: 3.1e-55
      AAA_11   1 klndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneeer 99 
                 +ln+sqreaik+al ++  ++i+GPPGtgKT t++el++ql          ++++riLvC+pSN +vD +lerl            +  ++R+g+++ r
  CCD23685.1 217 NLNQSQREAIKFALINDI-SIIHGPPGTGKTYTLIELIQQL---------VERGQRILVCGPSNISVDTILERLNG-------VLPGNLLLRIGHPA-R 297
                 59**************96.**********************.........799********************776.......899999********.8 PP

      AAA_11 100 iseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeaeesleeevldeaei 198
                   +++ ++sl+   ++  +     +++k+i   ++k  + +                  +k k  +++r+++ke+kel+kel+ +e+++ ++++ ea++
  CCD23685.1 298 LLDSNLRHSLDILSKSGDAG----AIVKDIYHDIDKTISGI------------------KKLKSYKDKRESWKEVKELRKELRIRERKVINDLILEAKV 374
                 99999999988777777755....68777777777777766..................6778899999****************************** PP

      AAA_11 199 vltTlsgagsklleklak......kfdvviIDEAaqavEpstliPlrlga....kkvvLvGDpkQLpatvis 260
                 v++Tl+g++s++l+kl +       fd++iIDE +q++Ep+++iPl ++     +k+vL+GD+kQLp+t+++
  CCD23685.1 375 VVATLHGSSSRDLCKLYNdesvtsLFDTLIIDEVSQSLEPQCWIPLISHYksdiSKLVLAGDNKQLPPTIKT 446
                 ****************99999999**********************77766777****************96 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.9
      AAA_11  71 lerllr.glldsegekykpkivRvgneeeriseavksvsleekvekrlekee.................k 122
                 +++ll+  l+d  ++ y+ ++ ++ n + r++e++ ++s +e+ e +l +                   +
  CCD23685.1 452 VQKLLQtTLFDRLVSIYGDQFRKLLNVQYRMNEEIMEFSSNEMYEGKLLADVtvashllsdlsgvdsneD 521
                 5555555566666666666666666666666666666666666666665543333333333333332220 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   5.6e-15   3.8e-12       1     143 [.     222     442 ..     222     445 .. 0.73

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 5.6e-15
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.............................. 68 
                 qrea++ al +++ ++ ++pGtGKT++l + ++ lve+g    ++il++ + + +++ + erl++++                                
  CCD23685.1 222 QREAIKfALINDISIIHGPPGTGKTYTLIELIQQLVERG----QRILVCGPSNISVDTILERLNGVLPGnlllrighparlldsnlrhsldilsksgda 316
                 99***99********************************....78******************665444788888888777776665555555555555 PP

      AAA_19  69 ...........atTiHrlal...............................................ldfddlltealelle..........eaeeekk 99 
                                                                                                             +  +++ 
  CCD23685.1 317 gaivkdiyhdiD-------KtisgikklksykdkreswkevkelrkelrirerkvindlileakvvvA-------------TlhgsssrdlcKLYNDES 395
                 555555555542.......0555555677788888888888888888777777766555544444332.............033444445553445566 PP

      AAA_19 100 lqeee.llivDEfqd.vd.elqyrLlkallgekkklllvGDpdQliy 143
                 +++ + +li+DE+++ ++ +    L++  + +  kl+l GD++Ql++
  CCD23685.1 396 VTSLFdTLIIDEVSQsLEpQCWIPLISHYKSDISKLVLAGDNKQLPP 442
                 666677******97615666667899999966699**********97 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.8e-10   1.3e-07       2      64 ..     218     278 ..     217     320 .. 0.86
   2 !   11.1   0.0   0.00035      0.24      81     130 ..     373     442 ..     345     460 .. 0.71

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.8e-10
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLae 64 
                 ln++Q++a++ +l ++  +++++Gp+GtGKt++l +l + + ++g+r++++ p++   +++ e
  CCD23685.1 218 LNQSQREAIKFALIND--ISIIHGPPGTGKTYTLIELIQQLVERGQRILVCGPSNISVDTILE 278
                 89*******9998888..9******************999999***********998888555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00035
      AAA_30  81 k..................grarlepg.tllivDEagmv.dtkqlaallkaaekagakvilvGDerQlas 130
                 k                  + +++++  + li+DE++     + +  l+++ +++  k++l+GD++Ql++
  CCD23685.1 373 KvvvatlhgsssrdlcklyNDESVTSLfDTLIIDEVSQSlEPQCWIPLISHYKSDISKLVLAGDNKQLPP 442
                 233333333336666777733566666799*******9736666789*******99************97 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0041       2.8       2      21 ..     236     255 ..     235     273 .. 0.83
   2 !    9.3   0.0    0.0012      0.84      44     107 ..     382     447 ..     349     514 .. 0.71
   3 !   10.6   0.0    0.0005      0.35     157     232 ..     578     662 ..     535     664 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0041
  Viral_helicase1   2 vvhGvpGcGKStlirkllrt 21 
                      ++hG pG GK+  + +l+++
       CCD23685.1 236 IIHGPPGTGKTYTLIELIQQ 255
                      8***********99999988 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0012
  Viral_helicase1  44 nlsvrtvdsflmalvkstkgkililDEylll..haGyill.laalskaklvilfGDplQipfhsrna 107
                      ++s   ++ +    v s  +++li+DE  +   +++ i l  + +s ++ ++l GD++Q p   + +
       CCD23685.1 382 SSSRDLCKLYNDESVTS-LFDTLIIDEVSQSlePQCWIPLiSHYKSDISKLVLAGDNKQLPPTIKTE 447
                      45555566666666666.69*******97643378888887788999************98765554 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.0005
  Viral_helicase1 157 etepkgqe..kvlvyltftqalkealgvr.....evttvhevqGltfdkVtlvllketdlelis....esrenllvAlTRhrkslvi 232
                      + + ++qe   ++ +  +  +l+++l ++     e++tv + qG + ++ +l l +++d+   +    +++  l vA+TR +++l +
       CCD23685.1 578 IASNVPQEciGIISPYSAQVNLLKSLIRTdypliEISTVDGFQGREKEVIILSLVRSNDKF--EvgflSDDRRLNVAMTRPKRQLCV 662
                      33333444454444444444555556666799999***********999988777666543..3357778999********999976 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3       3.1   2.1e+03     166     195 ..     118     147 ..      44     208 .. 0.54
   2 !   23.3   0.0   5.6e-08   3.8e-05       1     128 [.     218     445 ..     218     585 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.1
                    CCHHHHCCCHHHHHCHHHHHHHHHHHTTCC CS
  UvrD-helicase 166 nikkeelslskskaeelrelvskakekqls 195
                     +   + +  k++ +++  ++++  ++ ++
     CCD23685.1 118 DNIQCDGTIFKISDQQITIALNESSQEPQE 147
                    222222222222222222222222222222 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 5.6e-08
                    SSHHHHHHHHS..-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH........................... CS
  UvrD-helicase   1 lnpeqreaias..lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee........................... 67 
                    ln++qreai+    +   ++   +G+GKT++l+e+i +l++ +    +rilv    n + + + eR++                            
     CCD23685.1 218 LNQSQREAIKFalINDISIIHGPPGTGKTYTLIELIQQLVERG----QRILVCGPSNISVDTILERLNGvlpgnlllrighparlldsnlrhsldi 309
                    6999*****999778888888889*******************....9*********************888888888888888888888888888 PP

                    ..........................................HHHHCCHHCTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTE.. CS
  UvrD-helicase  68 ..........................................alkkaeqessdderlrlalqnlseanisTlHsfcqkilkkeanrigldpnfr.. 119
                                                               l+k++  ++++ ++ + l    ++ + TlH+  ++ l k +n+  + + f+  
     CCD23685.1 310 lsksgdagaivkdiyhdidktisgikklksykdkreswkevkELRKEL--RIRERKVINDLILEAKVVVATLHGSSSRDLCKLYNDESVTSLFDtl 403
                    888888888888888888888888887766666655555333222222..3333367777777778888888888888888877777744444311 PP

                    EECHHHHH.................................H CS
  UvrD-helicase 120 ildeedee.................................d 128
                    i+de +++                                 +
     CCD23685.1 404 IIDEVSQSlepqcwiplishyksdisklvlagdnkqlpptiK 445
                    444444445555544443333333333333333333333331 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.6e-07   0.00011      24     141 ..     232     408 ..     199     426 .. 0.60

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 1.6e-07
                 TSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG................................................ CS
      ResIII  24 dkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef................................................ 74 
                 +   +i+ + GtGKT+++++li++l + g+  ++l+  p+++ ++  le++                                                
  CCD23685.1 232 NDISIIHGPPGTGKTYTLIELIQQLVERGQ--RILVCGPSNISVDTILERLngvlpgnlllrighparlldsnlrhsldilsksgdagaivkdiyhdid 328
                 3457899********************977..9********9999999888666677777777777666666666666666666666555544444444 PP

                 ......GGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH................................................. CS
      ResIII  75 ......kkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee............................................ee 123
                       k                                     +l++ ++++                                            + 
  CCD23685.1 329 ktisgiK-------------------------------------KLKSYKDKReswkevkelrkelrirerkvindlileakvvvatlhgsssrdlcKL 390
                 4444431.....................................3333332222222222222222222222222222222233333333333333467 PP

                 ...HHHTTT-SEEEEETG CS
      ResIII 124 eseellrdrfdviiiDEa 141
                 +++e   + fd +iiDE+
  CCD23685.1 391 YNDESVTSLFDTLIIDEV 408
                 777777777777777775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.4e-06    0.0017       7      61 ..     234     281 ..     232     442 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.4e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrell 61 
                 i +++G++GtGKT++l +l +ql+e       r + ++v+ ps  s +++l++l 
  CCD23685.1 234 ISIIHGPPGTGKTYTLIELIQQLVE-------RGQRILVCGPSNISVDTILERLN 281
                 679********************97.......55556666666666666666554 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.2e-06    0.0029       5      58 ..     218     269 ..     215     357 .. 0.76
   2 ?    0.9   0.0      0.37   2.6e+02     124     165 ..     404     448 ..     398     468 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.2e-06
                 -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S CS
        PhoH   5 ktkeQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpa 58 
                  +++Q+e+++    ndi ++ Gp GtGKty  + l  ++++++  +ri++  p+
  CCD23685.1 218 LNQSQREAIKFALINDISIIHGPPGTGKTYTLIELIQQLVERG--QRILVCGPS 269
                 688999****999*****************8777766665554..466666554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.37
                 EE-S.GGG--HHHHHHHHTTB-TT.-EEEEEE--------.---- CS
        PhoH 124 ilDE.AQnttkeqmkmfltRlGen.skvvvtGdvtqidlp.kgkk 165
                 i+DE +Q+++++    +++   ++ sk+v++Gd++q     k++ 
  CCD23685.1 404 IIDEvSQSLEPQCWIPLISHYKSDiSKLVLAGDNKQLPPTiKTED 448
                 66664577777777777766655449**********876633344 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   5.6e-06    0.0039       2      47 ..     237     281 ..     236     289 .. 0.92
   2 ?   -0.2   0.0       1.1   7.7e+02     103     129 ..     596     622 ..     591     640 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.6e-06
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfefla 47 
                    + + +G+GK+ +l  ++++l+++g+ +ilv+ ps+ +v+t++e+l+
     CCD23685.1 237 IHGPPGTGKTYTLIELIQQLVERGQ-RILVCGPSNISVDTILERLN 281
                    7899*******************98.****************9986 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
  Helicase_RecD 103 plpllkkllekfkrvvlatTvhGYEGt 129
                    +++llk+l+++ + ++  +Tv G+ G 
     CCD23685.1 596 QVNLLKSLIRTDYPLIEISTVDGFQGR 622
                    5889*******************9985 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.6e-05     0.025       3     101 ..     221     310 ..     219     321 .. 0.82
   2 ?    2.1   0.2      0.21   1.5e+02      67     135 ..     334     413 ..     318     434 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdiv 101
                  Q+eai+ +l ++  +++++ G+GKT   li ++q+++    ++g ++l+  P+   +  +l++l+ ++     ++ll ig ++ar   s+l++++di+
  CCD23685.1 221 SQREAIKFALINDISIIHGPPGTGKTYT-LIELIQQLV----ERGQRILVCGPSNISVDTILERLNGVLPG---NLLLRIG-HPARLLDSNLRHSLDIL 310
                 69********99999***********98.999999996....5899*********9999999999988885...3444444.56666666666666665 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.21
                 HHHHTTTST....SEEEEEETTSSHHHHHHHHHTT....CSEEEEEH.....HHHHHHH...HCTSSHCTTEEEEEEETHHHHHH CS
                 xxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx....xxxxxxxx.....xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  67 lkkfkkyid....lrvlliiggvaardqlskldng....vdivvgtp.....grlddll...stgklnlsqvrflVlDEadrlld 135
                 +kk+k+y d     +++  + ++ + ++++++ n+    +++vv+t          dl+   ++++  +s + +l++DE+ + l+
  CCD23685.1 334 IKKLKSYKDkresWKEVKELRKELRIRERKVI-NDlileAKVVVATLhgsssR---DLCklyNDES-VTSLFDTLIIDEVSQSLE 413
                 55555555522232222223333333334444.22344488888887543322...3444435444.6888899*****987765 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0005      0.35      25      59 ..     235     269 ..     217     277 .. 0.75
   2 ?    4.7   0.1      0.02        14     143     208 ..     430     491 ..     428     585 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0005
                 EEEEESTTSSCHHHHHHHHHHCHCTCCCEEEEESS CS
        PIF1  25 fFvtGsgGtgKtflwkallkklrsegkivlavAss 59 
                   ++G  GtgKt+ + +l+++l ++g+ +l+   s
  CCD23685.1 235 SIIHGPPGTGKTYTLIELIQQLVERGQRILVCGPS 269
                 4578**********************999987655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.02
                 EEEEE--TTS-----SSSSS---BGC...CSCHHHH--EEEE-S-STTTT...........HHHHH CS
        PIF1 143 tvvlgGDfrQilPviekgsraeivaasikeSklWkevkvlkLtknmRllsesldetekkelkeFsk 208
                  +vl+GD +Q++P i k++ ++ v+  + +  l +++  +   +  +ll+  ++ + ++e+ eFs+
  CCD23685.1 430 KLVLAGDNKQLPPTI-KTEDNKLVQK-LLQTTLFDRLVSIYGDQFRKLLN--VQYRMNEEIMEFSS 491
                 58*************.5555555555.66777777766555444434443..45666666777765 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.5e-05     0.011      19      49 ..     236     266 ..     230     275 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.5e-05
  TrwB_AAD_bind  19 livGttGsGKtqalekllrairargdraivl 49 
                    +i G  G+GKt +l +l++++ +rg+r++v 
     CCD23685.1 236 IIHGPPGTGKTYTLIELIQQLVERGQRILVC 266
                    689**************************97 PP

>> IL2  Interleukin 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2     4e-05     0.028      61     128 ..     328     397 ..     318     403 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4e-05
                 BSS--SGGGHHHHHHTHHHHHHHHHHHHHHSS--.TTHHHHHHHHHHHHHHHT-SSS-----.B-EEEEE CS
         IL2  61 Pkkatelkhlqcleeelkpleevlnlaqsknfel.edikelisninvtvlklkGsettftce.yddetat 128
                  k+ + +k+l+  ++  ++ +ev +l ++  ++  + i++li + +v+v  l+Gs ++  c+ y+de++t
  CCD23685.1 328 DKTISGIKKLKSYKDKRESWKEVKELRKELRIRErKVINDLILEAKVVVATLHGSSSRDLCKlYNDESVT 397
                 57788899999999999999***99998877655156899*********************868999987 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   8.4e-05     0.058       2      22 ..     236     256 ..     235     288 .. 0.79
   2 ?   -2.6   0.0       9.6   6.6e+03      36      68 ..     377     409 ..     351     415 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.4e-05
                 EEESSTTSSHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel 22 
                 +++GppGtGKT++   ++++l
  CCD23685.1 236 IIHGPPGTGKTYTLIELIQQL 256
                 689*********999999987 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.6
                 SSSTTHHHHHHHHHHHHHHHTSTS.EEEEEETGG CS
         AAA  36 skyvgesekkirelfkeakekakp.silfiDEid 68 
                   + g s++++ +l ++ +  +     l+iDE+ 
  CCD23685.1 377 ATLHGSSSRDLCKLYNDESVTS-LfDTLIIDEVS 409
                 4466777888888887755555.55889999986 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.5e-05     0.052       6      78 ..     236     412 ..     234     430 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.5e-05
      AAA_24   6 liyGpsgiGKTtlakel.......gpkplfi...........................................................dtekGlksl 38 
                 +i Gp+g+GKT+++ el       g+++l++                                                           d++k     
  CCD23685.1 236 IIHGPPGTGKTYTLIELiqqlverGQRILVCgpsnisvdtilerlngvlpgnlllrighparlldsnlrhsldilsksgdagaivkdiyhDIDK----- 329
                 589*******************************************************************999999977555555555554444..... PP

      AAA_24  39 dadkfpdie.............swedfldevvel....................................aaeladyktlviDtidele 78 
                       +i+             sw+++++  +el                                    +   + ++tl+iD +++  
  CCD23685.1 330 ------TISgikklksykdkreSWKEVKELRKELrirerkvindlileakvvvatlhgsssrdlcklyndESVTSLFDTLIIDEVSQSL 412
                 ......3334444444445566999999999999**********************************99999999*******999854 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.35   2.4e+02       7      51 ..      78     121 ..      73     156 .. 0.79
   2 ?   10.3   0.0   0.00072       0.5       4      31 ..     237     264 ..     234     274 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.35
        MobB   7 ksgsGKTtLleklipelkarglrvgtiKhahhgfdvdkpgkDsyr 51 
                 + ++G   L++ li++ ++ + + +  K ++h+ d+d+++ D  +
  CCD23685.1  78 NIKTGDIVLIKPLISHSNKAKHHRNK-KAHEHNGDIDTNDTDNIQ 121
                 55678888888899888777776554.8888999****9999766 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00072
        MobB   4 ivgksgsGKTtLleklipelkarglrvg 31 
                 i g  g+GKT  l +li++l +rg r+ 
  CCD23685.1 237 IHGPPGTGKTYTLIELIQQLVERGQRIL 264
                 568899*******************995 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.4e-05     0.058      44      79 ..     229     264 ..     198     282 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.4e-05
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgveavraglsvl 79 
                    ++  ++ Gp+G+GK++  i l ++ v++g ++l
  CCD23685.1 229 ALINDISIIHGPPGTGKTYTLIELIQQLVERGQRIL 264
                 455667799***********************9997 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011     0.078       3      32 ..     234     261 ..     232     303 .. 0.82
   2 ?   -3.0   0.0       4.6   3.2e+03      51     121 ..     357     370 ..     316     407 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
     DUF2075   3 vvlVtGvaGtGKtvvllnllaeleddeeer 32 
                 + +++G +GtGKt+ l++l+ +l   e+++
  CCD23685.1 234 ISIIHGPPGTGKTYTLIELIQQL--VERGQ 261
                 679******************99..44443 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.6
     DUF2075  51 lakkeekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAhrlltksdqaekqseenqlkelmk 121
                 l                                                         + +e++ +++l+ 
  CCD23685.1 357 L---------------------------------------------------------RIRERKVINDLIL 370
                 2.........................................................2233333333333 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     8e-05     0.055     111     162 ..     215     265 ..     187     272 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8e-05
       T2SSE 111 eealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivt 162
                 +e+l++ ++e+++ a+ +  + ++ G+ g+GKt +l  l++++ ++ +ri++
  CCD23685.1 215 NENLNQSQREAIKFALIND-ISIIHGPPGTGKTYTLIELIQQLVERGQRILV 265
                 4556677777888885554.55789********************9999975 PP

>> DUF853  Bacterial protein of unknown function (DUF853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.7e-05     0.053       8      53 ..     219     264 ..     212     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.7e-05
      DUF853   8 eaeqelalalklanrhGliaGatGtGktvtLqvlaeslseaGvpvf 53 
                 +++q+ a++ +l n   +i G  GtGkt tL  l ++l e G  ++
  CCD23685.1 219 NQSQREAIKFALINDISIIHGPPGTGKTYTLIELIQQLVERGQRIL 264
                 678899999******************************9997776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00015       0.1      28      53 ..     236     261 ..     222     375 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00015
      AAA_16  28 llsGesGvGKsslvrellralekdgg 53 
                 +++G++G+GK+  + el ++l ++g 
  CCD23685.1 236 IIHGPPGTGKTYTLIELIQQLVERGQ 261
                 79**********99999999999942 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00035      0.24       2      32 ..     235     265 ..     234     602 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00035
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   2 aiastkGGvGKTtlaanLaralarrglrVll 32 
                 +i+ +  G+GKT +++ L++ l +rg r+l+
  CCD23685.1 235 SIIHGPPGTGKTYTLIELIQQLVERGQRILV 265
                 5666667**********************98 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0     0.002       1.4       3      28 ..     233     258 ..     231     280 .. 0.84
   2 ?    0.6   0.0      0.76   5.2e+02      53      87 ..     388     425 ..     356     460 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.002
      AAA_14   3 kilvitGaRrvGKTtllkqlikellv 28 
                  i +i G+  +GKT+ l +li++l  
  CCD23685.1 233 DISIIHGPPGTGKTYTLIELIQQLVE 258
                 6889*****************99873 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.76
      AAA_14  53 lelilek.lkeekktylflDEiqev...pewekalkslv 87 
                  +l+ ++ +++     l++DE++++   ++w   + ++ 
  CCD23685.1 388 CKLYNDEsVTS-LFDTLIIDEVSQSlepQCWIPLISHYK 425
                 44444443333.334599999998844444444444444 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00026      0.18       6      55 ..     234     282 ..     231     285 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00026
                 EEEEE--TTS-TTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT CS
  Flavi_DEAD   6 ltvldlhPGaGktrkvlpelvkeaierrlrtlvLaPtrvvlaemeealkg 55 
                 + +++  PG+Gkt  +l el+++ +er +r lv  P  + +  + e l+g
  CCD23685.1 234 ISIIHGPPGTGKTY-TLIELIQQLVERGQRILVCGPSNISVDTILERLNG 282
                 6678888******7.5779********************99999998887 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00055      0.38       3      25 ..     236     268 ..     234     321 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00055
      AAA_33   3 llvGlpGsGKstlaerllkklg..........a 25 
                 +++G+pG+GK++ + +l+++l            
  CCD23685.1 236 IIHGPPGTGKTYTLIELIQQLVergqrilvcgP 268
                 78**********999999888655455544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 4540.64
//
Query:       CCD23686.1  [L=174]
Description: hypothetical protein NDAI_0C00250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-18   65.4   4.2    5.9e-18   65.2   4.2    1.1  1  Mt_ATP-synt_D  ATP synthase D chain, mitochondrial (ATP5H)
     0.0047   16.7   2.4      0.051   13.3   0.3    2.2  2  DUF4201        Domain of unknown function (DUF4201)
  ------ inclusion threshold ------
      0.016   15.5   3.7      0.028   14.8   1.2    2.1  2  DUF1104        Protein of unknown function (DUF1104)
      0.056   12.2   0.1      0.075   11.8   0.1    1.1  1  Herpes_UL47    Herpesvirus UL47 protein
      0.058   13.6   0.1       0.12   12.6   0.1    1.5  1  PK_C           Pyruvate kinase, alpha/beta domain
      0.078   13.7   0.6       0.11   13.2   0.5    1.3  1  Pet20          Mitochondrial protein Pet20
      0.089   12.4   0.1       0.33   10.6   0.0    2.0  2  Vac_Fusion     Chordopoxvirus multifunctional envelope protei
       0.13   12.5   0.4        2.1    8.6   0.0    2.2  2  U-box          U-box domain
       0.74   10.4   5.0        2.6    8.6   5.0    2.0  1  DUF2408        Protein of unknown function (DUF2408)
        0.9    9.8   3.8       0.59   10.4   1.1    2.2  2  DUF948         Bacterial protein of unknown function (DUF948)
        6.1    6.9   8.1         11    6.1   2.7    2.3  2  FlxA           FlxA-like protein


Domain annotation for each model (and alignments):
>> Mt_ATP-synt_D  ATP synthase D chain, mitochondrial (ATP5H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   4.2   3.6e-21   5.9e-18       3     142 ..       5     147 ..       3     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 3.6e-21
                    ----SSS-HHHHHT..TS-GGGHHHHHHHHHHHHHHHHHHHHS-SS-----HHHHHHHSSSTTHHHHHHHHHHH--------TTT.THHHHHHHHH CS
  Mt_ATP-synt_D   3 rialkaidwaalae..rvppnqkaqfkalkaksdeylrrvaklPeelpkIdWayYkknvakeglVdeFekkYealkipypedkyt.eevdaeekev 95 
                    + a +  dwa+     +++ ++++q+ ++k+++de  r++ +l  ++ ++d+++Y++ ++++ +Vd+ e  Y+++  +    k++ +++ + e+ +
     CCD23686.1   5 KSAANKLDWAKVITslKLSGSTATQLSNFKKRNDEARRQLLELQSKPTTVDFNHYRSILQNSEIVDKIESFYKSYTPVTLDIKSQlNSLSKFENHA 100
                    567788999998872245678999**********************************************99999766666566679********* PP

                    HHHCHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXXXXXXXXXXXX CS
  Mt_ATP-synt_D  96 kkeikefkeeskkrieelekeleklksllpfeemtmedfaeafPeta 142
                    ++++ke  + ++++++ l ++l++++++ pf+++t++++++a+Pe  
     CCD23686.1 101 MENAKETESMVASELKALDETLQNIQNARPFDQLTVDELVQAKPEID 147
                    ********************************************964 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.037        60      91     134 ..      28      71 ..      17      78 .. 0.67
   2 !   13.3   0.3   3.1e-05     0.051      67     132 ..      89     154 ..      87     162 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.037
     DUF4201  91 selselkkelkekeerlaklrkelykvklerdklrkqneklkqq 134
                 ++ls+ kk+ +e  ++l +l+ + + v  ++ +   qn+++ ++
  CCD23686.1  28 TQLSNFKKRNDEARRQLLELQSKPTTVDFNHYRSILQNSEIVDK 71 
                 56667777777777777777777777766666666666666665 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 3.1e-05
     DUF4201  67 rlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklk 132
                 +l + ++ + ha+++ ke ++m++sel++l + l+++++ +   +  + ++ + +  ++++ ek+ 
  CCD23686.1  89 QLNSLSKFENHAMENAKETESMVASELKALDETLQNIQNARPFDQLTVDELVQAKPEIDEKVEKMV 154
                 67888999******************************9876666666666666666666655555 PP

>> DUF1104  Protein of unknown function (DUF1104)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.33   5.3e+02      38      71 ..      27      63 ..       6      80 .. 0.65
   2 ?   14.8   1.2   1.7e-05     0.028      21      81 ..      95     156 ..      85     160 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.33
                HHHHHHHHHHHHHHHHHHH...TTS-HHHHHHHHHHH CS
     DUF1104 38 ekekkkfkkklkeaaeknl...ekmtvkefeklrkev 71
                + +  +fkk  +ea+++ l   +k t  +f+++r   
  CCD23686.1 27 ATQLSNFKKRNDEARRQLLelqSKPTTVDFNHYRSIL 63
                5555667766666665544111456677777777654 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.7e-05
                 GHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH.HTTS-HHHHHHHHHHHHHHHHHT--- CS
     DUF1104  21 evldykmevaKrlkslkekekkkfkkklkeaaekn.lekmtvkefeklrkevrkalkkkikk 81 
                 ++ +  me aK ++s+ + e k+  + l++  ++  ++++tv e  + + e+ ++++k +k+
  CCD23686.1  95 KFENHAMENAKETESMVASELKALDETLQNIQNARpFDQLTVDELVQAKPEIDEKVEKMVKT 156
                 678899***********************97765439********************99875 PP

>> Herpes_UL47  Herpesvirus UL47 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.6e-05     0.075     383     446 ..      28      93 ..       7      99 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.6e-05
  Herpes_UL47 383 vtlrefikdrddaved.lkie.qatdkdPkgtarviaedevkeeLealyekenPisvdlaenlval 446
                    l++f k  d+a  + l+++ + t +d +   ++++++e+  ++e+ y+ + P+++d++ +l +l
   CCD23686.1  28 TQLSNFKKRNDEARRQlLELQsKPTTVDFNHYRSILQNSEIVDKIESFYKSYTPVTLDIKSQLNSL 93 
                  5688999999999765145656668899999****************************9988655 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   7.4e-05      0.12       8      89 ..       5     108 ..       1     122 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.4e-05
                 HHHHHHHT.-SEEEEE-SSSHHHHHHHHT-TS.....SEEEEEESHHHH...............HHHHH.HCTTEEHHH.HHHHH...TTSHHHHHHHH CS
        PK_C   8 veaaeelg.akaIvvltesGetArliskyrpk.....vpiiavtpnelt...............arqla.lyrGvypvlvekaktaestdellreavkv 84 
                  +aa++l+ ak I  l  sG+tA ++s+++++      +++ + +++ t                 ++  +y+ ++pv ++++++ +s++++ ++a++ 
  CCD23686.1   5 KSAANKLDwAKVITSLKLSGSTATQLSNFKKRndearRQLLELQSKPTTvdfnhyrsilqnseiVDKIEsFYKSYTPVTLDIKSQLNSLSKFENHAMEN 103
                 67999996599999999*************99999999999999977777777777777777778888879999******9998888888877788888 PP

                 HHHTT CS
        PK_C  85 akeag 89 
                 ake +
  CCD23686.1 104 AKETE 108
                 88854 PP

>> Pet20  Mitochondrial protein Pet20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.5     7e-05      0.11      19     100 ..      73     160 ..      58     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7e-05
       Pet20  19 diLfaGYrPlllpvkenillveankkkekeeklneqevleee.ekeieelakesgtggiksggvngtwkkkpviPskllpy.....ws 100
                 +  +  Y P++l  k++++ +++ ++++ e+ +++++++ +e +   e+l++ +++    +  v++ ++ kp i +k+ ++     w+
  CCD23686.1  73 ESFYKSYTPVTLDIKSQLNSLSKFENHAMENAKETESMVASElKALDETLQNIQNARPFDQLTVDELVQAKPEIDEKVEKMvktgqWD 160
                 6789***************999999888777777777766665777788999999999999999999999999999887664445555 PP

>> Vac_Fusion  Chordopoxvirus multifunctional envelope protein A27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         2   3.2e+03      40      49 ..      40      49 ..      25      50 .. 0.67
   2 ?   10.6   0.0    0.0002      0.33       4      37 ..      67     100 ..      64     103 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2
                XXXXXXXXXX CS
  Vac_Fusion 40 lRkamlaLak 49
                 R+ +l+L+ 
  CCD23686.1 40 ARRQLLELQS 49
                4777777765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-XX CS
  Vac_Fusion   4 dleerllvlekdfqlvikcckrvnealkRlEnHl 37 
                 ++++++ +  k+++ v+   k + ++l+  EnH+
  CCD23686.1  67 EIVDKIESFYKSYTPVTLDIKSQLNSLSKFENHA 100
                 799******************************8 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0013       2.1      34      70 ..      43      78 ..      31      80 .. 0.89
   2 ?    2.0   0.1      0.14   2.3e+02      28      68 ..     115     154 ..     106     159 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0013
                HHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHHHHHH CS
       U-box 34 hllsrdktdPftrepltqdqlipnlelKekIdeflee 70
                 ll+  ++ P t+ ++  + ++ n+e+  kI++f ++
  CCD23686.1 43 QLLE-LQSKPTTVDFNHYRSILQNSEIVDKIESFYKS 78
                5666.899**************************875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.14
                 HHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHHHHHHHHHH CS
       U-box  28 rstiekhllsrdktdPftrepltqdqlipnlelKekIdefl 68 
                  +++++ l++ ++  Pf + ++++  +  ++e+ ek+++ +
  CCD23686.1 115 LKALDETLQNIQNARPFDQLTVDE-LVQAKPEIDEKVEKMV 154
                 577888999988888887544433.2344556666666555 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.0    0.0016       2.6      18      68 ..      86     138 ..      17     160 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0016
     DUF2408  18 irrsLlslaakskaeeakesee................vkeelkelkeeLkkieskrdeegkFksee 68 
                 i+ +L sl             +                v++elk+l e L++i++ r   ++ + +e
  CCD23686.1  86 IKSQLNSL-------------SkfenhamenaketesmVASELKALDETLQNIQNARPF-DQLTVDE 138
                 33333333.............033333333334456779***************99977.4443333 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.1   0.00036      0.59      34      80 ..      82     128 ..      17     130 .. 0.88
   2 ?   -1.8   0.1       2.4   3.9e+03      70      86 ..     136     152 ..     133     156 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00036
      DUF948  34 tieelekqvdpilkevedllakvnelledvneklekvdplteavadl 80 
                    ++++q+++++k  + ++++++e+ + v ++l+++d+  ++++++
  CCD23686.1  82 VTLDIKSQLNSLSKFENHAMENAKETESMVASELKALDETLQNIQNA 128
                 445677**************************************985 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.4
      DUF948  70 vdplteavadlgesvse 86 
                 vd+l++a  ++ e+v++
  CCD23686.1 136 VDELVQAKPEIDEKVEK 152
                 56666665555555554 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.6     0.034        55       8      42 ..      19      52 ..      15      77 .. 0.82
   2 ?    6.1   2.7    0.0067        11      28      70 ..      85     127 ..      61     152 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.034
        FlxA  8 ssssssgsasqiasLqkQiknlqkqLkelsesdel 42
                s + s ++a+q+++ +k  +++  qL el+++  +
  CCD23686.1 19 SLKLSGSTATQLSNFKKRNDEARRQLLELQSK-PT 52
                56778999*********************998.33 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0067
        FlxA  28 nlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqq 70 
                 +++ qL++ls+ ++   e+ k+ + ++ +++++l   ++ +q+
  CCD23686.1  85 DIKSQLNSLSKFENHAMENAKETESMVASELKALDETLQNIQN 127
                 5789999999999999999999999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1297  (0.0723409); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1310.29
//
Query:       CCD23687.1  [L=1041]
Description: hypothetical protein NDAI_0C00260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-15   54.6   2.5    7.7e-15   54.6   2.5    3.4  3  Fungal_trans  Fungal specific transcription factor domain
    1.4e-09   37.9  11.4    2.7e-09   37.0  11.4    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.4     0.026   2.3e+02     195     230 ..      91     133 ..      74     215 .. 0.69
   2 ?   -0.3   0.4      0.05   4.5e+02     196     233 ..     277     321 ..     251     378 .. 0.64
   3 !   54.6   2.5   8.6e-19   7.7e-15      95     260 ..     518     678 ..     415     682 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.026
  Fungal_trans 195 sddaseetlvetk.......lsneeksrkiasfllaLkkilsk 230
                   ++++++ +l+++        +   ++s   ++++++Lkkil++
    CCD23687.1  91 TLKKNNLKLQSQLstcqrthPPLTSTSTVSPTSMSDLKKILNS 133
                   4444444444444555555566889999999999999999998 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.05
  Fungal_trans 196 ddaseetlvetk...lsneeksrkiasfllaLkkilsk....iag 233
                    + +++++ e++   +++++++ +  s +++ ++il++    i++
    CCD23687.1 277 IKINNSKKDEKStnkNQKKTTRNQTGSIESRKSNILKQrlslISS 321
                   333333333322556677777778888888888888874333222 PP

  == domain 3  score: 54.6 bits;  conditional E-value: 8.6e-19
  Fungal_trans  95 q......sLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpL 185
                           Lll+++y++  + + + + ++g a+r +  lg+h +  +        l+ +e e  rRlww+++++++++++k G p  + d+ i+++L
    CCD23687.1 518 TkdggveVLLLYAFYLQVADCTVASYFYFGQALRTCLILGMHVDAQRDT------LSRFELEHHRRLWWTVYMFERMLSSKAGLPLSFTDNTISTEL 608
                   44444449****************************************9......*******************************99********* PP

  Fungal_trans 186 PcddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlq....seklswveeler 260
                   P+++d ++      e++             +  s  +++ +i ++i+ +l+ +  ++++  ++    ++ l+w++el++
    CCD23687.1 609 PDNFD-MNYPPPGCEHYIFP--------EAEYISNCVKIVQINAQILNQLYQRQPDSNILPTVqniiTKLLNWRNELSS 678
                   *****.*************9........789999999999999999999999999999888888888888888888875 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0  11.4     3e-13   2.7e-09       2      39 ..      39      74 ..      38      75 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 3e-13
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39
                aC++Cr+++vKC  ++P C +C+k+ l+C+ yse+s++
  CCD23687.1 39 ACIQCRRRHVKCPNGNP-CLRCVKSKLQCE-YSEPSRK 74
                9****************.************.*999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1041 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1747  (0.0974399); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 6603.41
//
Query:       CCD23688.1  [L=171]
Description: hypothetical protein NDAI_0C00270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-74  247.7   3.7    4.7e-74  247.5   3.7    1.0  1  ARPC4     ARP2/3 complex 20 kDa subunit (ARPC4)


Domain annotation for each model (and alignments):
>> ARPC4  ARP2/3 complex 20 kDa subunit (ARPC4)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.5   3.7   2.6e-78   4.7e-74       1     165 [.       1     166 [.       1     168 [. 0.98

  Alignments for each domain:
  == domain 1  score: 247.5 bits;  conditional E-value: 2.6e-78
                 XX--HHHHHHHHHHHHHHHT-------SSSTT----HHHH.---TTTB---EEEESSSS-EEEEEEBSSEEEEEEE----SSHHHHHHHHHHHHHGGGT CS
       ARPC4   1 maatlqpYldavrktLeaalclenfasqvverhnkpevEv.rkskelllkplviarsekekvliEssinSvRvSlkikqadelerillkkftrflmkra 98 
                 m+++l+pYl+avr +Leaal+l+nf+sq verhn+pevEv ++s elll+p++i+r+e+e+vliE+sinS+RvSlk+kqade+e+il++kftrfl +ra
  CCD23688.1   1 MSQSLRPYLTAVRYSLEAALTLSNFSSQEVERHNRPEVEVpNQSAELLLQPMHISRNEHEQVLIEPSINSIRVSLKVKQADEIEQILVHKFTRFLEQRA 99 
                 99**************************************55699****************************************************** PP

                 TTSTTB-SS--TT-SEEEEEETTHHHHS-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHH CS
       ARPC4  99 eafeilRrkpvegydiSfLitnehveklgkkklidfiikFveeidkeiselklslnararivaeefl 165
                 e+f ilRr p++gy iSfLitn+h+e+++  kl+dfii+F+ee+dkeise+kl lnarar+vae++l
  CCD23688.1 100 ESFYILRRVPIQGYSISFLITNKHTESMKTGKLVDFIIEFMEEVDKEISEMKLFLNARARFVAEAYL 166
                 ******************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1254.00
//
Query:       CCD23689.1  [L=168]
Description: hypothetical protein NDAI_0C00280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-08   34.1   0.0      3e-08   33.5   0.0    1.5  1  Peptidase_S24  Peptidase S24-like
  ------ inclusion threshold ------
      0.021   14.7   0.0      0.028   14.3   0.0    1.2  1  Cry1Ac_D5      Insecticidal delta-endotoxin CryIA(c) domain 5
       0.13   11.6   0.0       0.19   11.0   0.0    1.2  1  CCB2_CCB4      Cofactor assembly of complex C subunit B, CCB2


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   4.9e-12     3e-08       2      51 ..      40      90 ..      39     124 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 4.9e-12
                   XXSSTTCCTXXTTXEEEEE.CTS---TTSEEEEEETTCE-EEEEEEEEETT CS
  Peptidase_S24  2 vpGdSMeptlldGdlilVd.kfsepkrGdivvfrlpgeeeayiKrviglpg 51
                   v ++SMep ++ Gd+++   ++++ k Gd+vv  ++g+ + +++rv +++ 
     CCD23689.1 40 VLSGSMEPAFQRGDILFLWnRDTQNKVGDVVVYEVEGQSIPIVHRVLREHH 90
                   88**************9854999***********************97764 PP

>> Cry1Ac_D5  Insecticidal delta-endotoxin CryIA(c) domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   4.7e-06     0.028      27      79 ..     109     163 ..      96     167 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.7e-06
   Cry1Ac_D5  27 adnpifkghylhmsgakdidgtv...fptyiyqkidesklkpytryqvrgfvgssk 79 
                  d  ++kg+ +++s  kdi gtv   fp   y  i  s+ k y+++ + gf+g s 
  CCD23689.1 109 NDISLYKGKKIYLSKEKDIVGTVkgfFPQLGYVTIWVSENK-YAKFALLGFLGISS 163
                 57789*****************8887999999999999866.9*********9875 PP

>> CCB2_CCB4  Cofactor assembly of complex C subunit B, CCB2/CCB4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.2e-05      0.19      82     149 ..      22     132 ..      17     145 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.2e-05
   CCB2_CCB4  82 LaWaseaLltnTnarsvvvly.dgevllrrG....ilaekke.........kvkpg....ailkrvlkkq...........................ke 135
                 + W s +Ll nT++  vvvl    e  ++rG    ++++ ++         +v  +    +i++rvl+++                           k+
  CCD23689.1  22 MFWQSLSLLANTESPIVVVLSgSMEPAFQRGdilfLWNRDTQnkvgdvvvyEV--EgqsiPIVHRVLREHhstkkekqflltkgdnnavndislykgKK 118
                 78*************9999995569999***7665566665556676655433..14477999999988899999999999999999999999999999 PP

   CCB2_CCB4 136 iyLvdlklypGrve 149
                 iyL++ k  +G v+
  CCD23689.1 119 IYLSKEKDIVGTVK 132
                 99998888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1347.33
//
Query:       CCD23690.1  [L=416]
Description: hypothetical protein NDAI_0C00290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-44  151.1   9.5    1.3e-43  149.7   9.5    1.6  1  Ydc2-catalyt  Mitochondrial resolvase Ydc2 / RNA splicing MRS
  ------ inclusion threshold ------
       0.16   12.5   8.5        0.5   10.9   8.5    1.9  1  Secretin_N_2  Secretin N-terminal domain
       0.55   10.3   3.8        6.6    6.8   0.0    3.0  4  Pox_A22       Poxvirus A22 protein
       0.57    8.9   2.3       0.52    9.0   1.2    1.4  2  Presenilin    Presenilin
        1.5    8.5   6.7        3.2    7.4   6.7    1.4  1  DUF1673       Protein of unknown function (DUF1673)


Domain annotation for each model (and alignments):
>> Ydc2-catalyt  Mitochondrial resolvase Ydc2 / RNA splicing MRS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   9.5   3.7e-47   1.3e-43       1     279 [.      64     365 ..      64     366 .. 0.82

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 3.7e-47
                   EEEEEE-STTEEEEEEEE.......-TTS-EEEEEEEEE-TT...................SS-TT--------SHHHHHHHHHHHHHHHHHHH-.. CS
  Ydc2-catalyt   1 IlSIDmGikNlAfaklkvekkskkakekelptlnawkklnlsellstsaeeskseeeeeskskektkekekesfspdalaelAykLvselllayk.. 95 
                   I SID Gi+N++f+k+k+      + +++lp+l  w+k++l++ + t          + +++++k+ +k + + sp++++ l+++Lv++lll ++  
    CCD23690.1  64 INSIDTGISNFSFTKFKW------NINDKLPILLSWEKIQLQQKFLT----------NLPNNHHKKFDKLSSNMSPKEFSLLTHNLVNYLLLLSSsq 144
                   77****************......99****************66653..........567799**************************99554446 PP

                   ........-SEEEEEE----T.TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---..EEEEE-CCHHHHHHH..................... CS
  Ydc2-catalyt  96 ........PthvlIErQRfRsgggsavlewtlrvnvLEgmLyAvlytlkqesegkkaks..vvigvePkrvvnYWleeessesstke.......... 172
                           P++++IErQR+R+ +++ vl+ ++ +n+LE++L++ l++  ++ ++  + +   v++++P+r++++W+ + ++  ++++          
    CCD23690.1 145 ssqrsytiPDVFTIERQRTRTISSKFVLDPIINCNILENLLFSSLENRLRNLKDVDSIKpyLVLSSNPQRMTSFWCPNMKTMNNNNNnnnnnnnnnn 241
                   8889999****************************************97777666655599****************99987776668899999999 PP

                   ...................HHH-----------HHHHHHHHHHTTS..........EEESS..........HHHHHHHHH--STTT........... CS
  Ydc2-catalyt 173 ...................kkkkkksskekKkvkidlvgswLsaeikska...kkslkislkeeaeleelveaylekwkkkkkskkkkkkkskla.. 245
                                      k+ k +++k +K++ki+lv+++L++   s++   ++ ++++         + +     ++k++ + k  +   ++   
    CCD23690.1 242 nnnnnnntedheplsekkeKRVKLNDNKLSKTFKINLVKDILRTRCLSQQhsnDQFIELDSH-------WGDHLNHVITKNPTKFKLYDCLINDDee 331
                   ****************98888889999****************9884333332333333333.......3344444444444333333322222245 PP

                   ..........HHHHHHHHHHHHHHHHHHHHHHHH CS
  Ydc2-catalyt 246 kkdeesvdikKlDDLaDsllqgltwlewqanrek 279
                   +++ ++  +kK+DDLaDs+l+gl w+ew + +e 
    CCD23690.1 332 MNNLGQNGTKKDDDLADSFLHGLSWIEWLRSYEG 365
                   77799***********************998875 PP

>> Secretin_N_2  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   8.5   0.00014       0.5      28      57 ..     225     259 ..     211     285 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00014
  Secretin_N_2  28 ssgsssssssssssssgsssssssssnss.......s 57 
                   ++++++++++++++++++++++++++  +       +
    CCD23690.1 225 TMNNNNNNNNNNNNNNNNNNNNNNTE--DheplsekK 259
                   34444444444442222222222111..123455551 PP

>> Pox_A22  Poxvirus A22 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.02        72       2      44 ..      63     105 ..      62     119 .. 0.76
   2 ?   -2.6   0.0       1.5   5.4e+03      54      72 ..     153     171 ..     144     172 .. 0.82
   3 ?   -3.2   0.1       2.2     8e+03      38      47 ..     256     265 ..     239     287 .. 0.55
   4 ?    6.8   0.0    0.0019       6.6     124     142 ..     339     357 ..     326     361 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.02
     Pox_A22   2 iiaaiDiGvknpartllevkdnkarikvldiekldwssdwerr 44 
                 ii +iD G+ n + t ++ + n    ++l+ ek+++ ++   +
  CCD23690.1  63 IINSIDTGISNFSFTKFKWNINDKLPILLSWEKIQLQQKFLTN 105
                 899************9999665545566777777776666555 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
     Pox_A22  54 vdvvllEkqgrrsknvkfi 72 
                 +dv  +E+q  r   +kf+
  CCD23690.1 153 PDVFTIERQRTRTISSKFV 171
                 6788899999999988886 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.2
     Pox_A22  38 ssdwerrvar 47 
                 s+++e+rv+ 
  CCD23690.1 256 SEKKEKRVKL 265
                 4444444432 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0019
     Pox_A22 124 erkKlDDvADsfnlalkyv 142
                   kK DD+ADsf  +l+++
  CCD23690.1 339 GTKKDDDLADSFLHGLSWI 357
                 56899***********997 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         1   3.7e+03     149     159 ..      57      67 ..      56      75 .. 0.88
   2 ?    9.0   1.2   0.00015      0.52     209     271 ..     201     271 ..     189     324 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1
  Presenilin 149 lqqaYlilisa 159
                 lqq+Y+i++s+
  CCD23690.1  57 LQQGYIIINSI 67 
                 8*******997 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00015
  Presenilin 209 eifpaLiYsatvvvlaaeekkaevaeseeeeeaekkkeeasesskeeeseeesseksaqsse........s 271
                 +i p L+ s+++ ++++    + ++++++++++++++++++++++++++e++++ +++++++        s
  CCD23690.1 201 SIKPYLVLSSNPQRMTSFWCPNMKTMNNNNNNNNNNNNNNNNNNNNNNTEDHEPLSEKKEKRvklndnklS 271
                 67788888888888755444444455555555444444444444444444433333333333233333330 PP

>> DUF1673  Protein of unknown function (DUF1673)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.7   0.00089       3.2      12      73 ..     219     278 ..     218     283 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00089
     DUF1673  12 WCPnakaletrksispenleadnysrakeenesseenpgwvdkrsnrillvslfftllsllv 73 
                 WCPn k ++  ++ + +n +++n+++ +++n +++e p + +k +   l  + + + +++++
  CCD23690.1 219 WCPNMKTMNNNNN-NNNNNNNNNNNNNNNNNTEDHE-PLSEKKEKRVKLNDNKLSKTFKINL 278
                 **********999.3333333333333333333333.3333333444444777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2034  (0.113447); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2792.67
//
Query:       CCD23691.1  [L=302]
Description: hypothetical protein NDAI_0C00300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-43  147.4  12.2    6.4e-43  147.1  12.2    1.0  1  MIP            Major intrinsic protein
  ------ inclusion threshold ------
       0.37   10.7   2.4        1.9    8.4   0.0    2.8  3  Deltameth_res  Deltamethrin resistance
        5.6    6.6   6.4        5.1    6.7   4.4    2.0  2  PRA1           PRA1 family protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.1  12.2   1.1e-46   6.4e-43       9     223 ..      57     269 ..      50     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: 147.1 bits;  conditional E-value: 1.1e-46
                 HHHHHHHHHHHHHHHHHHHHHHCCCSSCSSSSTTSS....HHHHHHHHHHHHHHHHHHHHHHHCHT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHH CS
         MIP   9 ravlAEflatlllvfigvgsalnvkkkvsslaslvs....vtleavalafglalavlvylaagiSGaHlNPavTlallvarkisllrailYivaQllGa 103
                  a++ Ef +t+++++ +   ++nv+++ + + + ++     +l+ +a++fg++++  v ++a++SG+ lNPav l+l++ar i+ +r i+++ +Q + +
  CCD23691.1  57 IAAVGEFCGTFMFLWCSYV-VANVANHDALMDAYPDgthpEQLLMIAFGFGFSVMFSVWCFADVSGGALNPAVSLSLVLARAITPQRCIVHWLSQWIAG 154
                 57899*********99887.3344444443333333445669********************************************************* PP

                 HHHHHHHHHHCHHHHHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHCSTTSSSSTCHGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHH CS
         MIP 104 ivaaallklltkglesraglfanslkpglsagqalvvEiiltfvLvlvvfaltddkrkvslgelaplaigllvaliilvgipltGaamNpArslgpavv 202
                 ++a +  +++t g      +fan+l +g+s  +++++E++ t++L l+v+ ++ +kr+ s   +a+l ig+++++ +++  ++tG+++NpArs+g+a++
  CCD23691.1 155 MAAGGAAHAMTPGS----VKFANTLGNGCSRSRGVFLEMFGTAILCLTVLMTAVEKRASS--FMAALPIGISLFISHAALTAYTGTGVNPARSFGAALA 247
                 **********9994....889999****************************99999877..89*********************************** PP

                 HTHST.TTTHHHHHHHHHHHHH CS
         MIP 203 lnkfe.dhwvylvGPliGailg 223
                 +++f  ++w+y+vGP++Ga l+
  CCD23691.1 248 AKSFPpYFWIYIVGPILGATLA 269
                 ***95389***********998 PP

>> Deltameth_res  Deltamethrin resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00032       1.9      21      45 ..      52      76 ..      41      81 .. 0.85
   2 ?   -1.1   0.1       0.3   1.8e+03      27      38 ..     190     201 ..     189     216 .. 0.72
   3 ?    0.7   0.1     0.081   4.8e+02      15      43 ..     205     233 ..     201     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00032
  Deltameth_res 21 YNavLaaGiviligTialakesgli 45
                   + ++L+a++  ++gT+++ ++s ++
     CCD23691.1 52 FRTHLIAAVGEFCGTFMFLWCSYVV 76
                   6689****************99886 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.3
  Deltameth_res  27 aGiviligTial 38 
                    +G++il+ T+ +
     CCD23691.1 190 FGTAILCLTVLM 201
                    799999999765 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.081
  Deltameth_res  15 sakqrkYNavLaaGiviligTialakesg 43 
                    +++ + + a L +Gi  +i+ +al+ ++g
     CCD23691.1 205 EKRASSFMAALPIGISLFISHAALTAYTG 233
                    67778888999********9999998887 PP

>> PRA1  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.18   1.1e+03      90     100 ..      94     104 ..      52     142 .. 0.48
   2 ?    6.7   4.4   0.00086       5.1      92     133 ..     174     229 ..      93     232 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.18
        PRA1  90 sdrvvlivllv 100
                 +  ++l++ + 
  CCD23691.1  94 HPEQLLMIAFG 104
                 22222222222 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.00086
        PRA1  92 r..............vvlivllvvsvlllfltgavlvllwalliglllvllHAsfr 133
                                ++ +++l+++vl+  + +  + ++ al ig+ l + HA++ 
  CCD23691.1 174 TlgngcsrsrgvfleMFGTAILCLTVLMTAVEKRASSFMAALPIGISLFISHAALT 229
                 1344444456666667788999*******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2191.45
//
Query:       CCD23692.1  [L=631]
Description: hypothetical protein NDAI_0C00310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-50  171.0   0.9    7.2e-50  168.8   0.1    2.1  2  Flavoprotein  Flavoprotein


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.031   5.5e+02      95     125 ..     263     293 ..     233     306 .. 0.80
   2 !  168.8   0.1     4e-54   7.2e-50       2     156 ..     317     499 ..     316     501 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.031
                   HTHCCTTEEEEE.--HHCCTCSTCHHHHHHH CS
  Flavoprotein  95 ratakkpiliaPamnpamyenpqtlknlekl 125
                    at++  +++ Pa n+++ + + ++kn +++
    CCD23692.1 263 TATTTSTATVTPATNSSTHNTKSNVKNPKEI 293
                   4577889999********9999999998887 PP

  == domain 2  score: 168.8 bits;  conditional E-value: 4e-54
                   EEEEEE-SSCGGGCHHHHHHHHHH....TTEEEEEEESCHHHHCCHHGGS...................TCSSHHHHHHCTTESEEEEEEEEHHHHH CS
  Flavoprotein   2 killgiTGsvaaikalellekLkk....egievqvvltkaAkkfiskeklklaa...............redpilhielrrwadllviaPasantla 79 
                   +il+g TGsva+ik++ +++kL k    e +++q+++tk A++f++  k++ +                 ++pilh elr+wad+l+iaP+santla
    CCD23692.1 317 HILMGTTGSVATIKVPLIIDKLFKiytpERVSIQLIVTKPAEHFLKGLKISSHVkiwreedvwyeykldGNEPILHHELRKWADILLIAPLSANTLA 413
                   9**************************99*****************88777777***************999************************* PP

                   HHHTT--SSHHHHHHHT.HCCTTEEEEE.--HHCCTCSTCHHHHHHH..H.T.....................GHHHHHHHHHHCH CS
  Flavoprotein  80 kianGiadnlltlilra.takkpiliaPamnpamyenpqtlknlekl..e.egvtvikPse.....gdigkgkmaeieeivgkild 156
                   kianGi++nllt++lr  ++ +p+l+aPamn+ my np t+k+l +l  e + vt++kP e     gdig+g+m+e+++iv+ +++
    CCD23692.1 414 KIANGICNNLLTSVLRDwSPLTPVLVAPAMNTFMYINPMTKKHLTILqnEcPYVTILKPMEkvlicGDIGMGGMREWTDIVEIMRK 499
                   ***************989*****************************987999*******99*******************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1962  (0.109432); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        49  (0.002733); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.08u 0.35s 00:00:01.43 Elapsed: 00:00:00.48
# Mc/sec: 3936.70
//
Query:       CCD23693.1  [L=217]
Description: hypothetical protein NDAI_0C00320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-29  103.5  17.4    3.9e-27   95.6  17.4    2.2  1  Cyto_heme_lyase  Cytochrome c/c1 heme lyase
  ------ inclusion threshold ------
      0.046   13.9   0.1      0.087   13.0   0.1    1.3  1  SgrR_N           Sugar transport-related sRNA regulator N-ter


Domain annotation for each model (and alignments):
>> Cyto_heme_lyase  Cytochrome c/c1 heme lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6  17.4   4.4e-31   3.9e-27      20     266 ..       2     200 ..       1     209 [. 0.73

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 4.4e-31
  Cyto_heme_lyase  20 sskasspseCPmhkkkkskkkkaaseaaakekkkesasacpvkeeeeseeeeeksalsklnplnympselsqerapeqkvdLpteReissiPkg 113
                      ss+++++++CP+++k+++   ++++   +++   ++++ + v  +++ e + ++ +++  n     p+ + ++ ++  + +++ eR++ssiP++
       CCD23693.1   2 SSNNNEQPKCPVDEKTRELWLQQHQ---QQQP--QKNTLAKV--STTLECSPDNLKQDLQN-----PPVVGSTSTTPSSSTITDERTVSSIPRT 83 
                      5677899999999444333322222...1111..11112222..11222233322222223.....3446667777778899************ PP

  Cyto_heme_lyase 114 deeglWeYPspqqmynAmlrKGyedipedavesmvavHnflnEgaWeeileWEkkfakglakgwkkckrgeekveeelekeeePkLlrFqGrpk 207
                       ++++W YPs++q+++Am rK ++  +e++++ +v +Hn +nE +W+ i +WE+                 +++          kL++F+G +k
       CCD23693.1  84 GTDSNWIYPSEKQFFEAMKRKNWNP-NETDMKTVVPLHNSINERVWNYINQWEHSTPC-------------NDI----------KLTNFKGDSK 153
                      **********************975.67889**********************76544.............444..........9********* PP

  Cyto_heme_lyase 208 elsPkarllqllgklfPskfstelPFDRHDWlvlRkteeeekkevrYviDyYsgpdeet 266
                      +l+P+a +++++ +        + PFDRHDW ++R+      k++ YviD+Y  + e  
       CCD23693.1 154 KLTPRAWFRSTILH-------YSKPFDRHDWQIDRC-----GKKIDYVIDFYCDEIETR 200
                      *******9998766.......358************.....689********9886654 PP

>> SgrR_N  Sugar transport-related sRNA regulator N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   9.7e-06     0.087       9      40 ..      22      53 ..      17      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.7e-06
      SgrR_N  9 LlqhfegkevevtLqelAdvlfCsrRhartlL 40
                L qh ++++++ tL++++ +l Cs  + +  L
  CCD23693.1 22 LQQHQQQQPQKNTLAKVSTTLECSPDNLKQDL 53
                789999*******************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1652.80
//
Query:       CCD23694.1  [L=129]
Description: hypothetical protein NDAI_0C00330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-14   54.1   0.0    1.7e-14   53.8   0.0    1.1  1  ParBc     ParB-like nuclease domain


Domain annotation for each model (and alignments):
>> ParBc  ParB-like nuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   9.7e-19   1.7e-14       1      85 [.      13     121 ..      13     126 .. 0.89

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 9.7e-19
       ParBc   1 tevplseirpnplqprkdspekieelvasIkk................kGllqPiivrktr...qgryeiiaGerRlrAakrlg......lkevpvivl 74 
                 te+pls+ir +p  p++d  +ki+++v ++ +                +G l+Pi+v+ +r   +++y +++G++R++A++r +         v++ ++
  CCD23694.1  13 TEIPLSQIR-RPIMPVLD-TQKIDAMVSTMNGipmasktcslesaqsmDGKLPPIDVMVVRhndENYYFAFGGCHRFQAYDRQAkdkddsNYLVRCKLI 109
                 69*******.*******9.************************************999888888********************887765445777778 PP

       ParBc  75 eid.deeamals 85 
                 +++ ++ +m+++
  CCD23694.1 110 PATeRQLKMYVG 121
                 888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.35
# Mc/sec: 1099.26
//
Query:       CCD23695.1  [L=342]
Description: hypothetical protein NDAI_0C00340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-53  180.6   0.1    4.4e-53  179.6   0.1    1.5  1  Ldh_1_C         lactate/malate dehydrogenase, alpha/beta C-te
    3.7e-43  147.0   0.0    5.2e-43  146.5   0.0    1.2  1  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom
    0.00035   19.7   0.0    0.00054   19.1   0.0    1.3  1  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
  ------ inclusion threshold ------
      0.014   15.8   0.2       0.09   13.2   0.0    2.4  4  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
      0.097   12.0   0.2       0.47    9.8   0.0    2.3  2  THF_DHG_CYH_C   Tetrahydrofolate dehydrogenase/cyclohydrolase


Domain annotation for each model (and alignments):
>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.6   0.1   1.2e-56   4.4e-53       1     166 [.     171     337 ..     171     338 .. 0.97

  Alignments for each domain:
  == domain 1  score: 179.6 bits;  conditional E-value: 1.2e-56
                 THHHHHHHHHHHHHHHTS-GGGEE--EEBSSSTETTEEHHHHHTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHHHHHTTHTE CS
     Ldh_1_C   1 TtLDivRaktflaekagvtprsvkvtViGgHsgvtiipllsqvkellklsekqleeliervqnggdevvkakkGagsatlsmAvAgakfveallrdtke 99 
                 TtLD++R++ fl+e  +++p++++v+ViGgHsg+tiip+lsq ++++ ls++q++eli+r+q+ggdevvkak+GagsatlsmA+Aga f++a++r++++
  CCD23695.1 171 TTLDLIRSSRFLSEILKTDPTKEHVNVIGGHSGITIIPILSQLENCSTLSQEQKNELIHRIQFGGDEVVKAKDGAGSATLSMAYAGATFADAVMRGLND 269
                 9************************************************************************************************99 PP

                 EEEEEEEEESCCCECCS...SEEEEEEEEEEETTEEEEE-------HHHHHHHHHHHHHHHHHHHHHHCC CS
     Ldh_1_C 100 ilsagvyldgevglkdq...eieyfsvPvvlgknGvekvleilklndfeeekleksvkeLkkeiekglef 166
                 +  + v++ + v+++     +i++f+++v+lg nGvek++e +kln+ e+e+le+++++Lkk+iekg  f
  CCD23695.1 270 E--KNVVMSSFVDSPLFkneGIDFFASKVTLGPNGVEKIHEFGKLNQHENEMLETCKETLKKNIEKGYTF 337
                 9..999999999987655569**********************************************988 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.5   0.0   1.5e-46   5.2e-43       1     141 []      22     169 ..      22     169 .. 0.93

  Alignments for each domain:
  == domain 1  score: 146.5 bits;  conditional E-value: 1.5e-46
                 EEEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEE.....SSGGGGTTESEEEE--S-SS-TTTTHHHHHHHH CS
     Ldh_1_N   1 vkvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkvse.....keeealkdadvvvitagvprkpGetRddLlkvN 94 
                 +kvav+Ga+GgiGq+l+lll+ ++ + +l+L+D++  +++Gva+dlshi t+++vk+ +++        +++kd+d+++i+agvprkpG+tRddL+++N
  CCD23695.1  22 YKVAVLGASGGIGQPLSLLLKLNHNVTDLRLYDLR--NAKGVATDLSHIPTNSTVKGFAPDqqqpdALRDTIKDSDLILIPAGVPRKPGMTRDDLFNIN 118
                 59*********************77788*******..9******************999884211123456899************************* PP

                 HHHHHHHHHHHHHHTTTSEEEE-SSSHH....HHHHHHHHHHTS-GGGEEE CS
     Ldh_1_N  95 akIvkeiveaiakvapnaivlvvsNPvd....iltevlkkasglpkkrvig 141
                 a+Iv+++++ iak apn  +lv+sNPv+    i++evlk++  +++k+++g
  CCD23695.1 119 AGIVHDLAQTIAKEAPNSSILVISNPVNstvpIVAEVLKEHNVYNPKKLFG 169
                 *************************************************98 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.5e-07   0.00054       1      92 [.      25     118 ..      25     138 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.5e-07
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkkvieg...Dvtdkdkleealegvdvvihlaslvdvagkltedeimkvn 92 
                 +v+G++G +G+ l   L   +++ ++r +Dlr+ + +  +ls++ ++++++g   D ++ d l++ ++++d+++  a++    g++++d + ++n
  CCD23695.1  25 AVLGASGGIGQPLSLLLKLNHNVTDLRLYDLRNAKGVATDLSHIPTNSTVKGfapDQQQPDALRDTIKDSDLILIPAGVPRKPGMTRDD-LFNIN 118
                 59**********9766655566********************99999977664448888999****************99999977766.55555 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.5e-05      0.09       1      42 [.      23      64 ..      23     103 .. 0.76
   2 ?   -2.1   0.0       1.4   5.2e+03      76      96 ..     123     143 ..     115     161 .. 0.67
   3 ?   -3.1   0.0       2.9   1.1e+04       2      22 ..     195     213 ..     194     225 .. 0.75
   4 ?   -2.1   0.0       1.4   4.9e+03      35      73 ..     254     293 ..     247     308 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-05
                    EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHH CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkkla 42
                    kva++Ga+G +Gq l  lL+ + +v+ ++l+  ++ +G + +
      CCD23695.1 23 KVAVLGASGGIGQPLSLLLKLNHNVTDLRLYDLRNAKGVATD 64
                    7********************999999999998886665544 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
                     HHHHHHHHHHHHHTTSEEEES CS
  Semialdhyde_dh  76 agvskelapklaeagvkviDl 96 
                     ++ ++ +a+++ ++ + vi++
      CCD23695.1 123 HDLAQTIAKEAPNSSILVISN 143
                     556666777777777777766 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.9
                     EEEETTTSHHHHHHHHHHHCT CS
  Semialdhyde_dh   2 vaivGatGyvGqellrlLeeh 22 
                     v ++G  G  G  ++ +L++ 
      CCD23695.1 195 VNVIG--GHSGITIIPILSQL 213
                     77888..88999998888874 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.4
                     TTTTSBHHHHSG.GGTTTECEBEEE.GGGGGCTT-SEEEE- CS
  Semialdhyde_dh  35 rsaGkklaeavk.aleegkdlkved.vdeeelkevdivfla 73 
                       aG ++a+av   l+++k++++++ vd+  +k+  i f+a
      CCD23695.1 254 Y-AGATFADAVMrGLNDEKNVVMSSfVDSPLFKNEGIDFFA 293
                     3.788888777667888888888887777777766666666 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00013      0.47      32      61 ..      17      46 ..       7     123 .. 0.88
   2 ?   -1.9   0.0      0.51   1.8e+03      34     103 ..     190     258 ..     181     274 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00013
                   ---TT-EEEEE---TTTHHHHHHHHHCTT- CS
  THF_DHG_CYH_C 32 ielegkkvvvvGrsnivgkplallLlekna 61
                   ++++  kv+v+G+s  +g+pl+llL+ ++ 
     CCD23695.1 17 TSINPYKVAVLGASGGIGQPLSLLLKLNHN 46
                   5677789*****************987643 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.51
                    -TT-EEEEE---T.TTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B-GGGS-TT-E CS
  THF_DHG_CYH_C  34 legkkvvvvGrsn.ivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelikaemvkegav 103
                     + ++v v+G ++ i   p+    + +n+ +   ++k + +++i    d vv a   ++  + +m   ga+
     CCD23695.1 190 PTKEHVNVIGGHSgITIIPILS--QLENCSTLSQEQKNELIHRIQFGGDEVVKAKDGAGSATLSMAYAGAT 258
                    5556677776444033333332..23455555555555555555556666666655555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2340.10
//
Query:       CCD23696.1  [L=168]
Description: hypothetical protein NDAI_0C00350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.9e-10   39.3  15.5    1.2e-09   38.5  15.5    1.4  1  zf-CHY       CHY zinc finger


Domain annotation for each model (and alignments):
>> zf-CHY  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5  15.5   6.6e-14   1.2e-09       1      74 [.      55     136 ..      55     144 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 6.6e-14
      zf-CHY   1 CkHykra..vvairapcCkk.lyaCreCHeeledhelerlevkevlcllCeteqekavlCkkCkk..efaey..........fCpiCkl 74 
                 C H++++  +++++++cC++ +yaC++CHeel++h+++r++ +        + + k+++C++C k  +f+ey           C +C++
  CCD23696.1  55 CIHWNSEldIISLKFKCCSDvYYACYQCHEELTTHPVKRFDLNA-------NPDVKVIICGNCCKemTFEEYveskneydrlCCFNCQS 136
                 9******99*********98679******************995.......467899*****977677888888888888877999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1316.00
//
Query:       CCD23697.1  [L=437]
Description: hypothetical protein NDAI_0C00360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-18   65.6   6.1    3.1e-07   30.8   0.8    3.6  3  Ank_4     Ankyrin repeats (many copies)
    5.5e-18   65.3   7.0    8.4e-08   32.7   0.9    3.5  3  Ank_2     Ankyrin repeats (3 copies)
    1.3e-10   41.2   8.7     0.0089   16.4   0.3    4.5  4  Ank       Ankyrin repeat
    2.3e-10   39.8   8.2    0.00077   19.7   0.0    4.8  4  Ank_3     Ankyrin repeat
    4.4e-07   30.0   3.7      0.028   14.7   0.1    3.7  4  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   8.9e-08   0.00032       5      54 ..      10      60 ..       7      61 .. 0.79
   2 !   17.2   0.1   1.6e-06    0.0056      13      55 .]      53      96 ..      52      96 .. 0.80
   3 !   30.8   0.8   8.6e-11   3.1e-07       2      55 .]     111     163 ..     110     163 .. 0.97

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8.9e-08
       Ank_4  5 LhyaaisgrlelvrlLl....ekgadinaqdnrsGetalhiAakrgnveilklL 54
                L  a+i grl +v++Ll    e   +i+ q   +G+t lh+Aa +g++ +  +L
  CCD23697.1 10 LREAIITGRLLSVKRLLrrypELLYNIDPQ---NGWTSLHYAAFNGRYLVCVYL 60
                6779999**********6665555555555...*************98766666 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.6e-06
       Ank_4 13 rlelvrlLlekgadinaqdn.rsGetalhiAakrgnveilklLl 55
                r+ ++ +L++ g d n+++   +G+t++h A+k+g+ + ++lLl
  CCD23697.1 53 RYLVCVYLIQLGHDKNETLRtFQGNTCVHLALKNGHEQTTHLLL 96
                66788999999988666522135******************997 PP

  == domain 3  score: 30.8 bits;  conditional E-value: 8.6e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 l ++h a+i   ++++  L++ gad+  + +++G++ l  +++ g++++lklLl
  CCD23697.1 111 LAPIHIACINDYHQCLSMLISLGADLSIV-DENGDNSLNLCLQYGSLDCLKLLL 163
                 679**************************.***********************8 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.3e-08   4.7e-05      33      81 ..      13      69 ..      10      71 .. 0.81
   2 !   32.7   0.9   2.3e-11   8.4e-08      20      82 ..      65     139 ..      63     140 .. 0.81
   3 !   26.2   0.4   2.5e-09   8.9e-06      26      74 ..     110     165 ..     102     176 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.3e-08
       Ank_2 33 AakngnleivklLleh.......ad.ndgrtpLhyAarsghleivklLlekgadinl 81
                A++ g l  vk Ll         +d ++g+t LhyAa++g++ ++ +L++ g d+n 
  CCD23697.1 13 AIITGRLLSVKRLLRRypellynIDpQNGWTSLHYAAFNGRYLVCVYLIQLGHDKNE 69
                5666766569999984466774555999*********************99999986 PP

  == domain 2  score: 32.7 bits;  conditional E-value: 2.3e-11
       Ank_2  20 adpn.k....ngktaLhyAakngnleivklLleh....ad...ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 +d n +    +g+t +h+A kng++++  lLl+h    ++   + +  p+h+A+ +++ +++ +L+  gad+ + 
  CCD23697.1  65 HDKNeTlrtfQGNTCVHLALKNGHEQTTHLLLQHfsrfLNdkgEGNLAPIHIACINDYHQCLSMLISLGADLSIV 139
                 56665244689**********************9988755453334499*****************88***9876 PP

  == domain 3  score: 26.2 bits;  conditional E-value: 2.5e-09
       Ank_2  26 gktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLl.e 74 
                 ++ ++h+A++n++++++++L++       +d++g + L ++ ++g+l+++klLl +
  CCD23697.1 110 NLAPIHIACINDYHQCLSMLISLgadlsiVDENGDNSLNLCLQYGSLDCLKLLLmD 165
                 478*********99*******945467788899********************943 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   5.7e-05      0.21       1      26 [.      40      66 ..      40      72 .. 0.85
   2 !   12.5   0.1   4.5e-05      0.16       2      23 ..      76      98 ..      75     105 .. 0.92
   3 !   16.4   0.3   2.5e-06    0.0089       5      31 ..     113     140 ..     112     141 .. 0.91
   4 ?    2.6   0.1     0.061   2.2e+02       6      23 ..     147     165 ..     142     175 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.7e-05
                TSBBHHHHHHHHTTHHHHHHHHT.TTS CS
         Ank  1 dGnTPLHlAatngkkriiklLLh.GAn 26
                +G+T LH+Aa ng   ++ +L++ G +
  CCD23697.1 40 NGWTSLHYAAFNGRYLVCVYLIQlGHD 66
                7*********99999999999954654 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.5e-05
                SBBHHHHHHHHTTHHHHHHHH.T CS
         Ank  2 GnTPLHlAatngkkriiklLL.h 23
                GnT+ HlA  ng+++ ++lLL h
  CCD23697.1 76 GNTCVHLALKNGHEQTTHLLLqH 98
                9*******************966 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 2.5e-06
                 HHHHHHHHTTHHHHHHHHT.TTSTTCBT CS
         Ank   5 PLHlAatngkkriiklLLh.GAnlnald 31 
                 P H+A+ n+ ++++++L++ GA+l ++d
  CCD23697.1 113 PIHIACINDYHQCLSMLISlGADLSIVD 140
                 89****8899********55*****998 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.061
                 HHHHHHHTTHHHHHHHH.T CS
         Ank   6 LHlAatngkkriiklLL.h 23 
                 L l+ ++g+++++klLL +
  CCD23697.1 147 LNLCLQYGSLDCLKLLLmD 165
                 556558999*******963 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.2e-07   0.00077       1      30 [.      40      68 ..      40      69 .. 0.91
   2 !    7.5   0.0    0.0021       7.4       2      24 ..      76      98 ..      75     101 .. 0.90
   3 !   11.1   0.4   0.00014      0.51       5      30 ..     113     137 ..     110     138 .. 0.93
   4 ?    3.0   0.1      0.06   2.2e+02       1      23 [.     142     164 ..     142     170 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.2e-07
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvn 30
                nG+t Lh+Aa +g++ ++ +L++  g d n
  CCD23697.1 40 NGWTSLHYAAFNGRYLVCVYLIQ-LGHDKN 68
                7**********************.887755 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0021
       Ank_3  2 GetpLhlAarsgnleivkfLlen 24
                G+t  hlA+++g+    ++Ll++
  CCD23697.1 76 GNTCVHLALKNGHEQTTHLLLQH 98
                9*************999999995 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00014
       Ank_3   5 pLhlAarsgnleivkfLlenkgadvn 30 
                 p+h+A+ ++ +  + +L+   gad+ 
  CCD23697.1 113 PIHIACINDYHQCLSMLIS-LGADLS 137
                 89*********99******.****97 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.06
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 nG + L l++ +g+l+ +k+Ll 
  CCD23697.1 142 NGDNSLNLCLQYGSLDCLKLLLM 164
                 68899***********9999996 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0056        20      23      56 .]      13      48 ..      13      48 .. 0.93
   2 !   12.7   0.1   3.4e-05      0.12      13      56 .]      39      83 ..      25      83 .. 0.89
   3 !   14.7   0.1   7.9e-06     0.028       1      54 [.      95     148 ..      95     150 .. 0.92
   4 ?    2.1   0.1     0.072   2.6e+02      24      42 ..     151     170 ..     144     179 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0056
       Ank_5 23 AakygaadvvrlLl.argadlnltdsrG.ltaldlA 56
                A+  g++  v++Ll  +++ l   d ++ +t l++A
  CCD23697.1 13 AIITGRLLSVKRLLrRYPELLYNIDPQNgWTSLHYA 48
                778888999*************************99 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.4e-05
       Ank_5 13 dgggntpLhvAakygaadvvrlLl..argadlnltdsrGltaldlA 56
                ++g+ t Lh+Aa +g+  v+ +L+   +  + +l++++G+t ++lA
  CCD23697.1 39 QNGW-TSLHYAAFNGRYLVCVYLIqlGHDKNETLRTFQGNTCVHLA 83
                3444.************************************99998 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 7.9e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 Ll+h+++ +n++ +g   p+h+A+ + + +++ +L+  gadl + d++G++ l 
  CCD23697.1  95 LLQHFSRFLNDKGEGNLAPIHIACINDYHQCLSMLISLGADLSIVDENGDNSLN 148
                 78999999999999999********************************87765 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.072
       Ank_5  24 akygaadvvrlLl.argadl 42 
                   yg++d+++lLl + + ++
  CCD23697.1 151 LQYGSLDCLKLLLmDDHFHN 170
                 459**********6555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3257.01
//
Query:       CCD23698.1  [L=414]
Description: hypothetical protein NDAI_0C00370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-47  159.7   0.1    4.4e-47  158.6   0.1    1.6  1  EF1G      Elongation factor 1 gamma, conserved domain
    3.9e-13   49.4   0.1    3.9e-13   49.4   0.1    2.0  2  GST_C     Glutathione S-transferase, C-terminal domain
    1.5e-10   41.2   0.4    4.6e-10   39.7   0.0    2.1  2  GST_N     Glutathione S-transferase, N-terminal domain
    1.2e-05   25.3   0.3    2.5e-05   24.2   0.3    1.5  1  GST_C_2   Glutathione S-transferase, C-terminal domain
     0.0034   17.6   0.1     0.0034   17.6   0.1    1.9  2  GST_C_3   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> EF1G  Elongation factor 1 gamma, conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.6   0.1   1.2e-50   4.4e-47       1     107 []     252     358 ..     252     358 .. 0.99

  Alignments for each domain:
  == domain 1  score: 158.6 bits;  conditional E-value: 1.2e-50
        EF1G   1 kakdplaalpkskfvldewKrkYsnedteekalkyfwenfdkeeyslwkveYkyneeltktfmssnliggffqrleklrkyaFgsvvvfgennnseisG 99 
                 k+k+pl+al ks+f ldewKr+Ysnedt+++al++fwe++++eeyslwkv+Ykyn+elt tfms+nl+ggff+rl +++ky+Fg++vv+gennn+ i+G
  CCD23698.1 252 KPKHPLEALGKSTFILDEWKRQYSNEDTRPVALPWFWEHYNPEEYSLWKVDYKYNDELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGITG 350
                 79************************************************************************************************* PP

        EF1G 100 vwlfrGqe 107
                 + ++rGq+
  CCD23698.1 351 AIMVRGQD 358
                 ******97 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.1   1.1e-16   3.9e-13      15      93 .]     117     196 ..      98     196 .. 0.89
   2 ?   -2.6   1.0       1.9   6.7e+03      16      30 ..     218     231 ..     207     246 .. 0.48

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 1.1e-16
                 TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT.TTTSHHHHHHHHHHHTSH CS
       GST_C  15 kaeekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafg.qekfpnlkawlerimarp 93 
                  +  +++++vd+a+ k++++ +a+e +l++ +yl++++++lAD  +v  +  +++l l+ + + k+p+l +w+++++a+p
  CCD23698.1 117 GSTPFNKKEVDAAFAKLNAYAAAFEVRLRDFTYLATENVSLADMQAVSTWGSAFKLLLGEEfRSKYPHLMRWFKTVSASP 196
                 333678889**********************************************99999999**************998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.9
                 THHHHHHHHHHHHHH CS
       GST_C  16 aeekkeelvdealek 30 
                 ++ekk+ +++ + e+
  CCD23698.1 218 KKEKKA-EKKPKAEQ 231
                 222222.22222222 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.3e-13   4.6e-10       2      75 ..       3      70 ..       2      71 .. 0.93
   2 ?   -3.0   0.2       2.7   9.8e+03      34      55 ..     211     233 ..     188     239 .. 0.62

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.3e-13
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET.TEEEESHHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn.gkkltESraIleYia 75
                ++tly ++g  r  ++++l+++ ++++evv+ + +      + +  ++pl+ +PaL+++ g kltE+ aI++Y++
  CCD23698.1  3 QGTLYAHLG-GRGLALEALIEHFNLDFEVVECKGN------ATFEEKFPLKMSPALVGPkGAKLTETIAIAYYLV 70
                79*******.9**********************52......4699****************************97 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.7
                 CSTTTCGGCHHHHHHCTT.S-SS CS
       GST_N  34 dfeageekspellklnpl.gkvP 55 
                 ++++ + k+++ + ++p+  + P
  CCD23698.1 211 TLQFVPPKKEKKAEKKPKaEQKP 233
                 33345555555555566554444 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.3     7e-09   2.5e-05       3      68 ..     125     190 ..     123     191 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 7e-09
                 HHCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHHH CS
     GST_C_2   3 averaleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdireaypnlraWle 68 
                 +v++a ++l a  +a+e +L+d+++l+ ++ +laD  +  +++ +     g+++r++yp+l +W++
  CCD23698.1 125 EVDAAFAKLNAYAAAFEVRLRDFTYLATENVSLADMQAVSTWGSAFKLLLGEEFRSKYPHLMRWFK 190
                 68889999999999*******************************99999**************97 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   9.4e-07    0.0034      19      91 ..     123     197 ..     103     200 .. 0.75
   2 ?   -3.2   0.7       2.9     1e+04      14      31 ..     217     234 ..     206     240 .. 0.52

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 9.4e-07
                 HHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHHHHHHH...TCC.CC-HHHHHHHHHHHTSHH CS
     GST_C_3  19 ekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvldgleea...eal.kkfpklkalyervearpk 91 
                 +k+ +    +l+ + ++fe  l     +yl+ +++++AD+  ++      ++   e+  +k+p+l+++ + v+a p 
  CCD23698.1 123 KKEVDAAFAKLNAYAAAFEVRLR--DFTYLATENVSLADMQAVSTWGSAFKLllgEEFrSKYPHLMRWFKTVSASPI 197
                 44445555688889999999999..889************87776666555568533369**************995 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.9
                 HCHHHHHHHHHHHHHHHC CS
     GST_C_3  14 qkeeaekkkefleerlpk 31 
                  k+e++++k+ + e+ pk
  CCD23698.1 217 PKKEKKAEKKPKAEQKPK 234
                 334444555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.29s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2871.61
//
Query:       CCD23699.1  [L=92]
Description: hypothetical protein NDAI_0C00380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 713.80
//
Query:       CCD23700.1  [L=833]
Description: hypothetical protein NDAI_0C00390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.9e-102  341.0   5.9   5.9e-102  341.0   5.9    1.8  2  BOP1NT       BOP1NT (NUC169) domain
      2e-22   79.0   8.5    4.1e-09   36.9   0.2    6.8  7  WD40         WD domain, G-beta repeat
    4.6e-08   33.3   0.6     0.0016   18.7   0.0    4.9  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> BOP1NT  BOP1NT (NUC169) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.7       0.6   3.6e+03      10      35 ..      75     100 ..      67     137 .. 0.73
   2 !  341.0   5.9  9.8e-106  5.9e-102       1     260 []     190     452 ..     190     452 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.6
      BOP1NT  10 didgkkimkeakkdeldkllekiddp 35 
                 di+g+ i +e+k++++++ +++ +d+
  CCD23700.1  75 DIEGQEIEQEQKQNHVQDEMSDSEDE 100
                 67777777777777776666655554 PP

  == domain 2  score: 341.0 bits;  conditional E-value: 9.8e-106
      BOP1NT   1 YddydhiGYdidgkkimkeakkdeldkllekiddpkawrtvkDkktgkevkLsdeelelikrlqkgelpdeeydpyedvvelftseeeihplseapepk 99 
                 Yd+++hiGYdi+gk+im++ak+++ld+ll++i+ p+ w+ + D+ +g  ++L++eeleli+++ ++e +d++++pye++v++ft++ee++pl++ pepk
  CCD23700.1 190 YDEMPHIGYDINGKRIMRPAKGSALDQLLDTIELPEGWTGLLDQDSGAGLNLTEEELELISKIGRNEQTDDQTNPYEPYVDWFTRHEEVMPLTAIPEPK 288
                 9************************************************************************************************** PP

      BOP1NT 100 rrfipskweakkvaklvrairkgrikl.......ekkekeeeekvydlWedeeeeeeekrkkeehipapklklPgheeSYnPpeeyllteeekkeweea 191
                 rrfipsk+eak+++k+vrair+gri         ++kek e+e  ydlW d+ee+++    +  +++apkl +P++eeSYnPpeeyllteeekkewe++
  CCD23700.1 289 RRFIPSKNEAKRIMKIVRAIREGRIIPpkqlkeiREKEKLENEYKYDLWGDSEETND----HVMNLRAPKLLPPTNEESYNPPEEYLLTEEEKKEWENT 383
                 *************************9867666655555555599*******888644....55569********************************* PP

      BOP1NT 192 dpedrkknfipqkfeslrkvpaYekfvkerFeRcLDLyLcpRvrkkrlnidpesLlPkLPspkdLkPFP 260
                 + ++r+knfipqk+ slrkvp+Y + ++erFeR+LDLyL+pRvrk+ lnidpesL+P+LPspkdL+PFP
  CCD23700.1 384 EFSEREKNFIPQKYGSLRKVPGYGENIRERFERSLDLYLAPRVRKNVLNIDPESLIPELPSPKDLRPFP 452
                 ********************************************************************9 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.2   6.9e-13   4.1e-09       2      37 ..     454     490 ..     453     491 .. 0.93
   2 ?    1.1   0.0      0.14   8.5e+02      10      24 ..     514     526 ..     507     538 .. 0.78
   3 ?   -0.6   0.0      0.48   2.9e+03      12      27 ..     622     637 ..     614     649 .. 0.77
   4 !    6.5   0.0    0.0027        16      12      38 .]     664     692 ..     647     692 .. 0.77
   5 ?    0.6   0.0       0.2   1.2e+03      15      34 ..     711     730 ..     700     733 .. 0.82
   6 !    9.6   0.1    0.0003       1.8       4      37 ..     742     776 ..     739     777 .. 0.87
   7 !   21.6   0.1   4.7e-08   0.00028       3      37 ..     792     831 ..     790     832 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 6.9e-13
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +c +++ GH + ++ l+ +p+g wla+GsdDgtvr+W
  CCD23700.1 454 RCSTIYAGHqGKIRTLSIDPSGLWLATGSDDGTVRVW 490
                 68999****666************************* PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.14
                 SSSEEEEEEETTSSE CS
        WD40  10 Hssvtslafspdgaw 24 
                 H  + ++ ++pd+  
  CCD23700.1 514 H--IECIEWNPDKET 526
                 5..*********876 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.48
                 SEEEEEEETTSSEEEE CS
        WD40  12 svtslafspdgawlas 27 
                  v  l++++ g+++++
  CCD23700.1 622 TVKRLSWHRKGDYFVT 637
                 478899******9986 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.0027
                 S...EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 s...vtslafspdgawlasGsdDgtvriWd 38 
                 s   + + +f+p ++ l+ +s  + +ri+d
  CCD23700.1 664 SkgiIMDAKFHPFKPQLFVCS-QRYIRIYD 692
                 155578999************.*******8 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.2
                 EEEEETTSSEEEEEETTSEE CS
        WD40  15 slafspdgawlasGsdDgtv 34 
                  ++ +p g+ l+++s D+ v
  CCD23700.1 711 KIDIHPRGDNLIASSFDKRV 730
                 57789999999988889887 PP

  == domain 6  score: 9.6 bits;  conditional E-value: 0.0003
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  +tl+ H + v+s+ f++  ++++s  dDg+++i+
  CCD23700.1 742 YKTLRYHdKAVRSVNFHKKLPLFSSVADDGNIHIF 776
                 578889*888************987799*****97 PP

  == domain 7  score: 21.6 bits;  conditional E-value: 4.7e-08
                 EEEEEESS..SS...EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH..ss...vtslafspdgawlasGsdDgtvriW 37 
                 +l++l+GH  ++   v +  ++p  awl+s++ D+t r+W
  CCD23700.1 792 PLKKLSGHkiKNnlgVLDAIWHPKEAWLFSSGADNTARLW 831
                 7899****774468988888********99888******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.7e-07    0.0016      36      90 ..     461     521 ..     454     523 .. 0.90
   2 ?    3.1   0.0      0.02   1.2e+02      39      76 ..     621     659 ..     615     707 .. 0.74
   3 !    4.5   0.0    0.0074        44      36      68 ..     747     779 ..     721     789 .. 0.88
   4 ?    0.1   0.0      0.17     1e+03      36      64 ..     802     830 ..     791     833 .] 0.83

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.7e-07
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek......avtclgWg 90 
                  ++++++r L+  p+g  La + +dg+vr+ ++ +g+ v +++  +++      ++ c++W+
   CCD23700.1 461 GHQGKIRTLSIDPSGLWLATGSDDGTVRVWEILTGREVYNVTLIEDTeentddHIECIEWN 521
                  5899*******************************999999988777788999*******7 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.02
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdg.evrlldaesgkvvhsl 76 
                  ++v+ L+W+ +g  ++ +  d+ + ++l  +  k + ++
   CCD23700.1 621 KTVKRLSWHRKGDYFVTVQPDSgSTSVLIHQVSKHLTQS 659
                  679999999999988876655424433333333444444 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0074
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldae 68 
                   +d+ vrs++++++  l+  + +dg++++++a 
   CCD23700.1 747 YHDKAVRSVNFHKKLPLFSSVADDGNIHIFHAT 779
                  5799**************************985 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.17
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrl 64 
                  k++  v +  W+p++  L  + +d++ rl
   CCD23700.1 802 KNNLGVLDAIWHPKEAWLFSSGADNTARL 830
                  5667788889***************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1478  (0.0824363); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.83u 0.31s 00:00:01.13 Elapsed: 00:00:00.47
# Mc/sec: 5348.87
//
Query:       CCD23701.1  [L=178]
Description: hypothetical protein NDAI_0C00400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-06   26.7   0.0    7.8e-06   26.2   0.0    1.2  1  GAF_2        GAF domain
    0.00032   21.3   0.0    0.00036   21.2   0.0    1.2  1  GAF          GAF domain
  ------ inclusion threshold ------
       0.18   11.1   0.0       0.24   10.7   0.0    1.2  1  AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> GAF_2  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.3e-09   7.8e-06      13     130 ..      56     169 ..      45     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 1.3e-09
                 HHH.HHSS..EEEEEEE-TTS-EEEEEEEES-TTSTT-S-B---TTHHHHHHHHTS-EEES-GGG-S-HHHHHHHHHTT--EEEEEE-T.T.S---EEE CS
       GAF_2  13 del.velgaalgyillvdddgglrlaawgeaeeefgaaldrplgeglvgealrtgrpvilndleedpdkkglpaghaglrsflavPlis.e.grvvGvl 108
                 ++l v++++a  y+     +++  l    ++++  ++ +   +g+g++g+a+ t+r  ++ d+       g+ a +   +s+++vP+++ +  ++++v+
  CCD23701.1  56 KALqVNVNWAGFYVTDKTKQNE--LILGPFQGKPACQTI--IFGKGVCGTAASTQRTQLIPDVNK---FPGHIACDGETKSEIVVPILDlQtAETLAVI 147
                 5553335566445444445555..778888888888888..88****************999666...55667899***********9998579***** PP

                 EES......--HHHHHHHHHHH CS
       GAF_2 109 nlyankppafdeedlelLeela 130
                  l   + ++f+e d+  Le la
  CCD23701.1 148 DLDCLDFEGFNEIDQKYLEKLA 169
                 **8889999**********998 PP

>> GAF  GAF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   6.1e-08   0.00036      44     131 ..      91     174 ..      29     176 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 6.1e-08
                 EEETTSHHHHHHHHHSSSEEESTGGTSTTHHTTHHHHHHHHTTESEEEEEEEEE..TTEEEEEEEEEE.SSS.CSHHHHHHHHHHHHHHHHH CS
         GAF  44 fmkngrgicgqvlatgqplvipdstpdprfaqynrrdllenmgirsslvvPlvn..dgelwGllvlhn.psp.pftreelellqvladqvav 131
                  +  g+g+cg++++t+++ +ipd+ + p + +          +++s +vvP+++  + e++++++l+       f++ +   l+ la ++++
  CCD23701.1  91 TIIFGKGVCGTAASTQRTQLIPDVNKFPGHIA-------CDGETKSEIVVPILDlqTAETLAVIDLDClD-FeGFNEIDQKYLEKLAILISK 174
                 3444999***************7766666666.......578999********888************63.2479************99986 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.1e-05      0.24       7      54 ..      67     114 ..      62     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.1e-05
                  HHCSCGCTSEEETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EE CS
  AlaDh_PNT_C   7 kalekffggkgtlaGgvpgvepakvlviGgGvaGlqAiatakglgakV 54 
                  ++++   + + +++G  +g  +++++++G Gv G++A    ++l  +V
   CCD23701.1  67 FYVTDKTKQNELILGPFQGKPACQTIIFGKGVCGTAASTQRTQLIPDV 114
                  55556666677889**********************988877776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.38s 00:00:00.82 Elapsed: 00:00:00.50
# Mc/sec: 1073.38
//
Query:       CCD23702.1  [L=817]
Description: hypothetical protein NDAI_0C00410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.22   10.3   0.5       0.41    9.5   0.5    1.4  1  LptF_LptG  Lipopolysaccharide export system permease LptF/Lpt
        3.4    8.2   7.2        2.2    8.8   3.7    2.5  2  UPF0449    Uncharacterised protein family UPF0449
        4.1    7.7   9.0       0.15   12.4   1.7    2.4  3  Spc24      Spc24 subunit of Ndc80


Domain annotation for each model (and alignments):
>> LptF_LptG  Lipopolysaccharide export system permease LptF/LptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.5   6.8e-05      0.41     197     281 ..     454     568 ..     444     569 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 6.8e-05
   LptF_LptG 197 elqlrLfngeiyevgddekkysretferyridinldpadlsteeesp............................delslsel...kekikalrsegle 264
                 +++l+++ g+  ev ++++ y  +   + +i   ++p+++++++ sp                              ls+s +   +   k+lrs++ +
  CCD23702.1 454 FTELDFNHGNLDEVLKKQELYLDKLKIDETILRKQSPEKFKSSDLSPddplfqsknehdgsgkelqglksqngsnSLLSISSMfcnYDRSKYLRSHDTN 552
                 8899***************88888888889999999999*****9998888888888888888887777777666555555557778888888888888 PP

   LptF_LptG 265 vrryraelhkrlalpla 281
                   +y+ae+++r ++p++
  CCD23702.1 553 -VQYQAEFYRRKSYPFI 568
                 .99************96 PP

>> UPF0449  Uncharacterised protein family UPF0449
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.71   4.2e+03      27      34 ..     500     530 ..     497     597 .. 0.46
   2 ?    8.8   3.7   0.00037       2.2      41      99 ..     650     707 ..     626     709 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.71
     UPF0449  27 edDvvft.......................i 34 
                 +dD++f+                       +
  CCD23702.1 500 PDDPLFQsknehdgsgkelqglksqngsnsL 530
                 5777777333333333333333333333330 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00037
     UPF0449  41 edkkassseeedleaeveelYeqvrtylelnerLeeakeeLkqkceeLktageeLeeei 99 
                 ed+k ss + ++l+ e+ ++ +++ ++ e++ +Le++++ L ++++eL+++ ++L+ ++
  CCD23702.1 650 EDEKFSS-SLHQLHLEFTSCSKKADKFNETQSKLENKHNYLLKEMQELNSLTSKLKYNV 707
                 5666666.6778888999************************************99776 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.77   4.6e+03      49     104 ..     548     605 ..     507     606 .. 0.48
   2 ?   -3.2   0.1       1.6   9.7e+03      21      43 ..     613     635 ..     609     655 .. 0.56
   3 ?   12.4   1.7   2.4e-05      0.15       8      67 ..     667     738 ..     660     774 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.77
       Spc24  49 vedetl.lklklYrsLGielekdvnkvlirnkekgdvnvlnl..ddklseffianyiWd 104
                 ++d+++ +++++Yr     + +d +++  ++++ g+   lnl   ++lse   a  iWd
  CCD23702.1 548 SHDTNVqYQAEFYRRKSYPFINDQTEIAAYQDSIGE-YRLNLhrSNSLSEASTAIEIWD 605
                 335555566666665444444443333333333332.2222211335666666666665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
       Spc24  21 esleselaelkeeleeleeesee 43 
                  ++   l + k +l++ e+++ +
  CCD23702.1 613 VKMARDLLKVKVRLHKQEQQKTR 635
                 44555555555555555555544 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 2.4e-05
       Spc24   8 riakelsdleselesleselaelkeeleeleeesee.......keser..vedetl...lklklYrsLGiel 67 
                 +++k++++ +++ ++le++ + l +e++el++  ++        ++++  v+d++     kl++Yr+L ++ 
  CCD23702.1 667 SCSKKADKFNETQSKLENKHNYLLKEMQELNSLTSKlkynvrlLNTRMrdVQDSVNefdNKLNVYRKLLLKQ 738
                 67899999999999999999999999999999999986666664444455334444677********97776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (817 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1142  (0.0636957); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 5594.66
//
Query:       CCD23703.1  [L=967]
Description: hypothetical protein NDAI_0C00420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-54  183.9   5.8    3.8e-54  183.9   5.8    2.2  2  HSP70     Hsp70 protein


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.9   5.8   2.1e-58   3.8e-54       1     591 [.      28     703 ..      28     710 .. 0.82
   2 ?   -2.5   4.7     0.057     1e+03     526     588 ..     850     914 ..     815     924 .. 0.56

  Alignments for each domain:
  == domain 1  score: 183.9 bits;  conditional E-value: 2.1e-58
                 EEEEEEXSSEEEEEEEE.TTEEEEEXXTTSXSSEESEEEEXT..T..SEEETHHHHHCTTTTGGGEEEXGGGTTTXBT.TSHHHHHHHTTXS.SEEEEE CS
       HSP70   1 viGiDLGttnsvvavme.ggkievianeegnrttPsvvaFtk..k..erlvGeaAkrqavtnpkntvfsvKrliGrkf.sdpevqkeikelp.ykvvkk 92 
                 viGiD G++n    v+  +   e++   e++r   s +a +k  +  er+ G+a  + a++ p+nt+ ++K l+G++  ++p+v +  ke p ++++++
  CCD23703.1  28 VIGIDYGQQNIKAMVISpQAPLEIVLTPEAKRKDISGLAIKKlpDgiERIYGSAVGSLATRFPQNTLLNLKPLLGKSIaNEPTVLNYLKEHPgVNITAT 126
                 79********8776666155679***********99999875333589****************************9735688888777666489**** PP

                 TTSBEEEEEEETTEEEEHHHHHHHHHHHHHHHHHHHHTSB.......EEEEEEEEXTTXXHHHHHHHHHHHH.HTTXEEEEEEEHHHHHHHHHHTCCSS CS
       HSP70  93 engkavveveaagekftpeqisamvLkklketaeaylgkk.......vtdavitvPaYfndaqRqatkdAgk.iAGLnvlRivNepTAaalaYGldkkd 183
                 ++g+  ++  + g ++  e+i am L+++ ++a+  l++k       v+   itvP Yf  aqR+a  d  + + G+    ++N+   +a+ + ++k+d
  CCD23703.1 127 STGRNSLSFVVDGVEYPLEEIVAMNLEEIVDRANVLLKEKdartndnVDMMAITVPGYFYQAQRNALLDVSSlVSGISKTSLINDGLSIAINFAIKKRD 225
                 ********************************998888766666666999*******************887368************************ PP

                 ....SCEEEEEEEEXSSXEE...EEEEEEETT....EEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHH.SX...XGGGSHHHHHHHHHHHHHHHHHT CS
       HSP70 184 ....kernvlvyDlGggtfd...vSilelekG....vfevkaTagDthlGGedfDealvehlveefkkke.gi...dlskdkkalqrlkeaaekaKkeL 267
                     k +  +vyD+G g+++   vSil+ ++      +e+ +  + +hlGG  f  +++  + ++f  ++ +i    l+ ++ka+ ++++aaekaK  L
  CCD23703.1 226 feldKAEYYIVYDMGSGSTKatlVSILKSSNEseplRIELGGYGYRSHLGGSTFTLEVATLIENNFLAQHpKIrteTLHANPKAIAKINQAAEKAKLIL 324
                 **999999*********9982334555544434444688899999**********9999998888876642443336889******************* PP

                 TTSSCSEEEEEEEEEETTTEEEEEEEEHHHHHHHHHHHHHHTHHHHHHHHH....HCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTT CS
       HSP70 268 SsskqteinleietvdedgkdlseklsRakfeelvedllertlepvekalk....daklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpD 361
                 S+  +te+ ++ie++ + + d++++++R+++e++ ed l++++ep+++al     d ++++++++ v+l GGstR+P vq ++ +++g  +  ++vn+D
  CCD23703.1 325 SA--NTEAFVSIESLID-DIDFKTTVTRQELEDISEDHLAEIIEPIQEALDnqlwDNNVTMKNLSGVILHGGSTRVPLVQRQLIDFVGeDNILRNVNAD 420
                 **..9***********9.**************************99998754444899******************************77789****** PP

                 THHHHHHHHHHHHHCTCGCSHCCEEEE..BESS-EEEEETTTE.EEEEESTTCBSSEEEE.EEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEEC CS
       HSP70 362 eavaiGAAvqagvlsgeeevkdllllD..vtpLslgietlggv.mtkliernttiptkks.qvfstaadnqtaveievlqgerelvkdnkllgsfeldg 456
                 e    G  + +     ++++++l +    ++  s++++ +    ++k+ ++   +p+  + +  s+ +    +++i  +       ++ k l++ ++ +
  CCD23703.1 421 ESAVNGVVLRGVQQFDAFKTRPLDIIErsISDYSIKVSSSSSQaTNKIFPKGSIFPATITmELHSINDTTMAPFSIDLY-------ENGKILSNVTV-D 511
                 *877776666554445566666555441144444444443333133444555566655553333333333345665555.......34477777776.5 PP

                 ESSCSTTCSEEEEEEEEETTSCEEEEEEET.TTCCEEEEEEECCSSSBHHHHHH............................................. CS
       HSP70 457 ippaprGvpqieVtfdidanGiltvsakdk.etgkeeeitieaseglseeeiek............................................. 509
                 +  a +  ++ + +  +  nG +++s+    + +k e i  ++ ++ +eee +                                              
  CCD23703.1 512 VSNAEDSFSNNKCKHGVSYNGTFSLSSDRVfKLEKVEAICLNSLSKTDEEETDGgimnklfkhkpknetaaettkkpkynktiklittstdinvkplsp 610
                 7889999999****************9988455666667776666666666666********************************************* PP

                 .....HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.....GGGSTHHHH....HHHHHHHHHHHCHTTSSCHHHHHHHHHHHHHHHH CS
       HSP70 510 .....mvkdaeesaeedkkkkeaieakneaeelvyslekkleee.....aekvseaek....ekvesaieeLkeeleeeekeeieakteelkkvve 591
                      ++++ ++  e d+++ +  e+kn +e+ +ys+++ lee+     + k++        + v+ ++e+L+e  +++ k++i +k+ e++++  
  CCD23703.1 611 sekynIIRNIKDLGEFDRQRFQLQESKNLLESSLYSARNFLEEDdviknGPKAQ---VdklsQLVSGTLEWLEEDSDHATKKQIDKKLGEINSLKD 703
                 ******************************************996653333333...24457888999********9999*******999988655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.057
                 HHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHH.HHCHTTSSC.HHHHHHHHHHHHH CS
       HSP70 526 eaieakneaeelvyslekkleeeaekvseaekekvesaiee.Lkeeleeee.keeieakteelkk 588
                 +   +k + e+  ++lekkl++++e+++ ++ ++++s++++ +++e +++  + ++ +kt ++k+
  CCD23703.1 850 KLRAQKRKEEKAKRQLEKKLANATETIQGESSSTLTSTETAkVTKESTTTIlSTDMTSKTTTVKS 914
                 33334455555556666666666666666665555444332033322222234444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (967 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2127  (0.118635); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.84u 0.65s 00:00:01.49 Elapsed: 00:00:00.63
# Mc/sec: 4646.94
//
Query:       CCD23704.1  [L=578]
Description: hypothetical protein NDAI_0C00430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-05   23.4   0.0      0.012   15.4   0.0    2.6  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0     0.001        18      12      32 ..     369     389 ..     368     398 .. 0.88
   2 !   15.4   0.0   6.6e-07     0.012      43      69 ..     534     560 ..     526     561 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.001
                 HHHHHHHHHTTSCEEEEEEEE CS
       RRM_1  12 eeeLkelFskfGpiksiklvr 32 
                 e+++kel++++G ++++++++
  CCD23704.1 369 ESKIKELLQPYGIVTNCSMFP 389
                 789**************9987 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.6e-07
                 EEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  43 fVeFeskedAekAlealngkklggrel 69 
                 + +F++ ++A+kA+e+l g+++++r +
  CCD23704.1 534 YLRFTTVDAAKKAMEKLSGTQFNDRSI 560
                 789*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4191.59
//
Query:       CCD23705.1  [L=495]
Description: hypothetical protein NDAI_0C00440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1192  (0.0664845); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3677.93
//
Query:       CCD23706.1  [L=393]
Description: hypothetical protein NDAI_0C00450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-55  186.8   0.5      5e-55  186.2   0.5    1.3  1  DUF4448          Protein of unknown function (DUF4448)
  ------ inclusion threshold ------
       0.17   11.2   0.0       0.27   10.6   0.0    1.3  1  Nucleoside_tran  Nucleoside transporter
        5.4    8.0   6.1       0.81   10.6   0.8    2.4  3  PIG-Y            Phosphatidylinositol N-acetylglucosaminyltra


Domain annotation for each model (and alignments):
>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.2   0.5   8.3e-59     5e-55       1     189 []     145     350 ..     145     350 .. 0.96

  Alignments for each domain:
  == domain 1  score: 186.2 bits;  conditional E-value: 8.3e-59
     DUF4448   1 dttkhslgpfirCtpdrynkk.....gssePFCtPkegselkvgktYyiTWdprfF....dekenekVkihlsyvkestkekglk.....ksffssdwl 85 
                 d+t+ sl+p+irCtp+ry+ k      ssePFCtP+e+s++kvgktY+++W+++fF    + + ++kV++hlsyvke++++kg++     ++ffss+w+
  CCD23706.1 145 DDTYVSLNPVIRCTPERYFFKglakdISSEPFCTPRENSQWKVGKTYFVSWFTQFFddehSGTVIDKVRVHLSYVKEKASDKGYHkrdipATFFSSEWV 243
                 689****************999**99******************************99998899********************9************** PP

     DUF4448  86 pnsdGfypltvdeewlkgkkservtivlvslqpdnvkd..........eveikkGpkVsltkkedlkkledkeseegkkaekyalaialPvvvvvlvlg 174
                 +n dG+yp++vde+wl+g+ +er   ++vs+qp nv+d            +++ G+kV++t+ke+++ +    ++  ++ + y++a+++P+ vvv++++
  CCD23706.1 244 KNVDGMYPIEVDEDWLQGQ-YERR--IVVSVQPFNVPDdefnplergvLLYMILGSKVAKTTKEEWAMI----DAGISDDKWYYVALTIPTLVVVVCVA 335
                 ******************9.7787..89*******************99**************999644....667888999***************** PP

     DUF4448 175 ligfvlwnrkkrdis 189
                 +++f++ n ++rd+s
  CCD23706.1 336 IYFFLHFNGRYRDFS 350
                 ************986 PP

>> Nucleoside_tran  Nucleoside transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.5e-05      0.27      67     103 ..     324     359 ..     307     390 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.5e-05
  Nucleoside_tran  67 ivsivvvivcvilllvlkklefykeykqlklegslle 103
                       + ++vv+vcv ++++l++   y+ +  +  + +l +
       CCD23706.1 324 TIPTLVVVVCVAIYFFLHFNGRYRDFSDVT-QRALAS 359
                      5678**********************9998.333333 PP

>> PIG-Y  Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.7   1.6e+04      36      48 ..     134     153 ..     108     155 .. 0.51
   2 ?   -2.7   0.0         2   1.2e+04      21      32 ..     193     204 ..     189     238 .. 0.43
   3 ?   10.6   0.8   0.00014      0.81      16      59 ..     290     337 ..     286     340 .. 0.55

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.7
       PIG-Y  36 v.......laddryYcylvp 48 
                         l++d+ Y+ l p
  CCD23706.1 134 DvyeeevyLDEDDTYVSLNP 153
                 12333335666667776655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2
       PIG-Y  21 fskllr.lgeapl 32 
                 +s++ +  ++ ++
  CCD23706.1 193 VSWFTQfFDD-EH 204
                 4444321222.22 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00014
       PIG-Y  16 myavlfskllrlgeaplsppv.....ladd.ryYcylvpl.lipvtlvfvi 59 
                 +y++l sk+ +   +++++++     ++dd +yY+ l +  l++v++v+++
  CCD23706.1 290 LYMILGSKVAK---TTKEEWAmidagISDDkWYYVALTIPtLVVVVCVAIY 337
                 67777666642...2223344555567766588887655515555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2806.03
//
Query:       CCD23707.1  [L=123]
Description: hypothetical protein NDAI_0C00460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-29  100.8   0.1    4.7e-29  100.6   0.1    1.0  1  Sen15     Sen15 protein
  ------ inclusion threshold ------
      0.021   14.6   0.0       0.46   10.3   0.0    2.2  2  SDH_C     Shikimate 5'-dehydrogenase C-terminal domain


Domain annotation for each model (and alignments):
>> Sen15  Sen15 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.1   5.3e-33   4.7e-29       1     100 []      13     123 .]      13     123 .] 0.95

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 5.3e-33
       Sen15   1 lvyldLleaknwtdveikeeee.lk...lvllkGrpkkklsed......elvlPlel....teklslekldkvfkelkeekserkkrivLaivddDsTv 85 
                 lv+++Ll+++ wt+v + +e+  +k   + ll+Grp++kls+d      e+vlP+e+    t++l+le ldk+f++l++e+   +kr++Lai++dD+T+
  CCD23707.1  13 LVRNNLLQFHLWTEVTVATETLsWKesnIRLLTGRPPHKLSNDdedvmtEYVLPVEMsqykTSYLTLEFLDKIFDNLCPEN---TKRLTLAIINDDGTT 108
                 699**************88887676999*******************************9999***************997...9************** PP

       Sen15  86 vYYkvtdGlvkPkqn 100
                 v+Y+v++G++kPk+n
  CCD23707.1 109 VFYFVYKGIHKPKKN 123
                 ************986 PP

>> SDH_C  Shikimate 5'-dehydrogenase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.2e-05      0.46      11      24 ..      19      32 ..      18      34 .. 0.86
   2 ?    2.3   0.0     0.016   1.4e+02      14      29 ..      42      63 ..      40      65 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.2e-05
                HHHHHHHS----HH CS
       SDH_C 11 eqFelWTGrepPve 24
                +qF+lWT +++ +e
  CCD23707.1 19 LQFHLWTEVTVATE 32
                7********98776 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.016
                HHHHS---......-HHHHHHH CS
       SDH_C 14 elWTGrep......PvevMrea 29
                +l TGr+p      + +vM e 
  CCD23707.1 42 RLLTGRPPhklsndDEDVMTEY 63
                688*****99999889999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 903.69
//
Query:       CCD23708.1  [L=740]
Description: hypothetical protein NDAI_0C00470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-20   71.9   0.0      1e-19   70.8   0.0    1.6  1  HA2          Helicase associated domain (HA2)
    5.3e-14   52.4   0.0    1.5e-13   50.9   0.0    1.8  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    4.2e-10   39.9   0.1    1.9e-09   37.8   0.0    2.2  2  Helicase_C   Helicase conserved C-terminal domain
    2.8e-09   37.0   0.0    5.4e-09   36.1   0.0    1.5  1  DEAD         DEAD/DEAH box helicase
    8.4e-06   26.1   0.1    2.5e-05   24.6   0.0    1.8  2  AAA_22       AAA domain
     0.0015   18.3   0.0     0.0029   17.4   0.0    1.4  1  AAA_30       AAA domain
     0.0017   18.7   0.0      0.004   17.5   0.0    1.6  1  AAA_19       AAA domain
      0.007   16.1   0.0      0.015   15.1   0.0    1.5  1  AAA_24       AAA domain
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.065   12.9   0.0    2.1  1  SRP54        SRP54-type protein, GTPase domain
      0.011   15.4   0.2      0.032   14.0   0.0    1.9  2  AAA_29       P-loop containing region of AAA domain
      0.015   15.8   2.6      0.017   15.6   0.0    2.2  2  AAA_23       AAA domain
      0.019   14.9   0.0      0.037   13.9   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
      0.069   12.6   0.0        0.4   10.1   0.0    2.2  3  PhoH         PhoH-like protein
       0.16   12.4   2.3       0.31   11.6   0.1    2.5  3  ABC_tran     ABC transporter


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   8.2e-23     1e-19       2      78 ..     481     571 ..     480     601 .. 0.76

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 8.2e-23
         HA2   2 lelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeee................e 78 
                 l+ L+ l ALd++g++Te G+ ma lP++p+l+ +L+ a+e   gcl+evi+iv++lsve+++l+++ ee++e +e                 
  CCD23708.1 481 LQELYTLAALDDSGKITERGKNMALLPIQPHLSSVLIKASES--GCLSEVIDIVSCLSVENLLLNPQPEERDEVNErrlticnggkrygdliM 571
                 689************************************555..***********************87766655455555555555544440 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   1.2e-16   1.5e-13       2      80 ..     653     727 ..     652     730 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1.2e-16
                  HHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHS CS
  OB_NTP_bind   2 raillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfa 80 
                   ++ l G+  + a+  p ++ y+t++t++ +++hpsS+l++   +k ++ ++yte v ttk y+r++++i+  wL +++
   CCD23708.1 653 LKCFLTGFTKNCAIGMPDRS-YRTVSTGETISVHPSSMLFS---NKSCPGIMYTEYVFTTKGYARNVSRIELSWLQEVV 727
                  6899*************998.*******************8...6******************************9876 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         8     1e+04      53      71 ..      88     106 ..      69     117 .. 0.78
   2 !   37.8   0.0   1.5e-12   1.9e-09       5     109 ..     285     417 ..     279     419 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8
                 HHHHHHHHHHHTTSSSEEE CS
  Helicase_C  53 nereeileqfnkgesdvLi 71 
                 ++++ei++  +++ ++vLi
  CCD23708.1  88 QNKDEIMNHLRSNPVTVLI 106
                 4667788888877777777 PP

  == domain 2  score: 37.8 bits;  conditional E-value: 1.5e-12
                 HHHHHHHHTTTTSEEEEEESSHHHHHH.HHHH........HHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESS CS
  Helicase_C   5 allellkleeeggkilifvntidrlek.vkll........lekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfd 92 
                 +++++ +++e+ g+il+f++ +++++k v++l        +e+k   +   +l++ l+  ++  +++  +  +++v+ +t++ae++++i +v++V++ +
  CCD23708.1 285 CCVQI-NQSEQMGDILCFLPGQEEIDKaVTILnkvseviaKETKvpLMIGHPLYAALSPAQQSLVFSPVKGFKRKVVFSTNIAETSVTISGVKFVVDSG 382
                 34444.79999**************9985555333344333333543444577788*************989999************************ PP

                 SSSSH..................HHHHHHHTTSSS CS
  Helicase_C  93 lprnv..................tsyiqriGRtgR 109
                 l +                    +s++qr+GR+gR
  CCD23708.1 383 LRKVKvwrhqlglatlltvpisqASAMQRSGRAGR 417
                 **443355578888999999999***********9 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   4.2e-12   5.4e-09       6     171 ..      92     245 ..      87     250 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 4.2e-12
                 HHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   6 eaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgt 104
                 e+++++ ++   ++ +eTGsGK++     +l+ +y+  +k++  + +  P r  a + ++++ + +    +++ +++g + + d+ ++   ++++ + t
  CCD23708.1  92 EIMNHLRSNPVTVLIGETGSGKSTQIPQFLLDDLYK--DKKHGSIAVTQPRRVAAINLATRVAQEFG---CNLGSTVGYSVRFDNCTNS--KTRLKYLT 183
                 566666677778899*******************97..888889*****************988888...3444556655555555555..6899999* PP

                 HHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBS.H CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx.x RF
        DEAD 105 pgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlp.k 171
                  g+l++ l  ++  nl++ +++++DEa++       d i   l++l  i+  g+  + ++iv+SAT++ +
  CCD23708.1 184 DGMLLRELmMDR--NLKEYSVVIIDEAHERTVL--TDLILGFLKSL--IQ--GPrPDLKIIVMSATIQaE 245
                 ******552444..5*************99886..78888888888..33..3334556*******9855 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.9e-08   2.5e-05       5     117 ..     100     227 ..      95     246 .. 0.75
   2 ?   -3.1   0.0       6.9   8.8e+03      42      68 ..     578     604 ..     571     637 .. 0.59

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.9e-08
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.............erlsseell.ealeqalrar 89 
                   ++v++Ge+G+GK+t + ++l  +      ++++ + + vt p      +l++++++++g +l +             +  +++ l   +l + l   
  CCD23708.1 100 NPVTVLIGETGSGKSTQIPQFLLDDL----YKDKKHGSIAVTQPRRVAAINLATRVAQEFGCNLGStvgysvrfdnctnSKTRLKYLTdGMLLRELMMD 194
                 5689***************9999873....3446899999999999999999999999999888889999*****999955555555555555555555 PP

      AAA_22  90 av...ielliiDEaqhlr..seealeeLrslln 117
                 +     +++iiDEa+  +  ++ +l +L+sl  
  CCD23708.1 195 RNlkeYSVVIIDEAHERTvlTDLILGFLKSLIQ 227
                 55666679*******963355777777777655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 6.9
      AAA_22  42 vvfvtlpsstsskdllrellralglel 68 
                 v+f++l +s+ss+d +r+ +++l  + 
  CCD23708.1 578 VYFYELDKSSSSADERRDWCKELCISY 604
                 667888888877666666666654444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.2e-06    0.0029       9      97 ..      93     208 ..      87     217 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.2e-06
      AAA_30   9 avealltsgdrvavltGpAGtGKttalkal..reaweaa.ggrviglAptgkaAkvLa............eelgi...........eastiakllkrlk 81 
                 ++++l +++  v+vl G  G+GK+t + +    ++++++  g++++  p   aA +La                +           +++         +
  CCD23708.1  93 IMNHLRSNP--VTVLIGETGSGKSTQIPQFllDDLYKDKkHGSIAVTQPRRVAAINLAtrvaqefgcnlgS---TvgysvrfdnctNSK---------T 177
                 566776666..9***************9866699**99966777777777777777773333222233321...022222222211222.........1 PP

      AAA_30  82 ................grarlepgtllivDEa 97 
                                 +  +l++ +++i+DEa
  CCD23708.1 178 rlkyltdgmllrelmmD-RNLKEYSVVIIDEA 208
                 33355567788888854.688899*******9 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.1e-06     0.004       4     115 ..      93     212 ..      90     234 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.1e-06
      AAA_19   4 ave.alkekvllvtaGpGtGKTrvlkhiv.allvelggvkpeeillvaftgrAakelrerlaalgae.....atTiHrlalldfddlltealelle... 92 
                 +++   +++v ++++  G+GK++ + + +   l + ++    +i++  + + Aa +l++r+    +e      +T+ +   + fd+ ++   + l+   
  CCD23708.1  93 IMNhLRSNPVTVLIGETGSGKSTQIPQFLlDDLYKDKK--HGSIAVTQPRRVAAINLATRV---AQEfgcnlGSTVGYS--VRFDNCTNS-KTRLKylt 183
                 5554567789999********99887754155555553..378888888888******999...444556887888877..555554422.22334444 PP

      AAA_19  93 ......eaeeekklqeeellivDEfqdvd 115
                       e   +++l+e  ++i+DE+ + +
  CCD23708.1 184 dgmllrELMMDRNLKEYSVVIIDEAHERT 212
                 777777888999996666******98644 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.1e-05     0.015       3      75 ..     101     209 ..      99     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.1e-05
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtek.Glksldadkfpdie.................swedfldevvel........................ 59 
                    +++G+ g+GK+t++ ++  + l+ d  + + + ++++++  i+                 +                                   
  CCD23708.1 101 PVTVLIGETGSGKSTQIPQFLLDDLYKDKKHgSIAVTQPRRVAAINlatrvaqefgcnlgstvG----------Ysvrfdnctnsktrlkyltdgmllr 189
                 5689****************99999999998455667777777777555555555555555441..........0444445555555557779999*** PP

      AAA_24  60 ....aaeladyktlviDtid 75 
                     +++l++y++++iD + 
  CCD23708.1 190 elmmDRNLKEYSVVIIDEAH 209
                 *****************875 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.1e-05     0.065       3     132 ..     102     249 ..     100     257 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.1e-05
                 EEEEEESTTSSHHHHHHH.HHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEE............SSTTSCHHH......HHHHHHHHHHHT CS
       SRP54   3 villvGlqGaGKTttlaK.LaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvik............kkeeadpaa......vakeavekakee 82 
                 v++l+G +G+GK t + + L + l k++k+  ++ +   R+aA++    +a++ g ++ +            +   +   +      +++e +   + +
  CCD23708.1 102 VTVLIGETGSGKSTQIPQfLLDDLYKDKKHGSIAVTQPRRVAAINLATRVAQEFGCNLGStvgysvrfdnctN--SKTRLKyltdgmLLRELMMDRNLK 198
                 789*************9845677777888889999999*******9999999987766545555666665431..223344000111444556667778 PP

                 TSSEEEEEE--SSTTHHHHHHH.HHHHHHHHSSSEEEEEEETTBHTHHHHH CS
       SRP54  83 kidvvlvDTaGrlqndkelmee.lkkikkvvkpdevllvldattgqeavkq 132
                 ++ vv++D a      ++l+   lk++ +  +pd +++v++at++ e+++q
  CCD23708.1 199 EYSVVIIDEAHERTVLTDLILGfLKSLIQGPRPDLKIIVMSATIQAEKFSQ 249
                 89******99877777776654388899999*************9998877 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.5e-05     0.032      21      38 ..      98     116 ..      86     122 .. 0.76
   2 ?   -3.6   0.1       7.9     1e+04       6      14 ..     463     471 ..     462     476 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.5e-05
      AAA_29  21 lkg.atlltGpsGsGKSTl 38 
                 +++ +t+l+G++GsGKST 
  CCD23708.1  98 RSNpVTVLIGETGSGKSTQ 116
                 23469*************6 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 7.9
      AAA_29   6 lvNWgtfdg 14 
                 +vNW  f++
  CCD23708.1 463 IVNWTWFEN 471
                 79**99976 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.1       1.8   2.3e+03     146     183 ..      44      82 ..       7      98 .. 0.58
   2 ?   15.6   0.0   1.3e-05     0.017      18     147 ..      99     248 ..      86     327 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.8
      AAA_23 146 felkdkkerleelekeleeledekkllekl.eqekekek 183
                 +e+++ + + +e+   ++++++ k++l+ + + +++ +k
  CCD23708.1  44 EETETNNAEDDEYDGPTNHIQNNKQQLKLKvQSLLKTRK 82 
                 223344447777777777777777776655433333333 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 1.3e-05
      AAA_23  18 skgltlItGpNGaGKTTil.dAiklaLygetprlsrksgrgfeksdveiese.........gkvkay.veltfenkdgry.........trsiererel 96 
                 s+++t+++G++G+GK+T + +++   Ly +++  s    +    + ++++++         g++ +y v+++  ++++++          r++  +r+l
  CCD23708.1  99 SNPVTVLIGETGSGKSTQIpQFLLDDLYKDKKHGSIAVTQPRRVAAINLATRvaqefgcnlGSTVGYsVRFDNCTNSKTRlkyltdgmlLRELMMDRNL 197
                 89***************8778888888887655444443333333333333333345454555555555555333333335666666666666667777 PP

      AAA_23  97 skkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefe 147
                 ++ + + +++a ++ + +d    f+++l++   + l++i++ +  ++e+f+
  CCD23708.1 198 KEYSVVIIDEAHERTVLTDLILGFLKSLIQGPRPDLKIIVMSATIQAEKFS 248
                 777777777777777777777777777777777777777777777665554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.9e-05     0.037      70     118 ..      65     119 ..      37     136 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.9e-05
                  HHHHHTTSEEEE--TTTH.....TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHH CS
  RsgA_GTPase  70 eelealgyevllvsaktk.....egleelkellkd.ktsvlvGqSGvGKStLina 118
                  ++ ++l ++v  + +++k     ++ +e+ ++l++  ++vl+G++G GKSt i +
   CCD23708.1  65 NNKQQLKLKVQSLLKTRKtlpvyQNKDEIMNHLRSnPVTVLIGETGSGKSTQIPQ 119
                  4444444444333222222234478999*****9989**************7755 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00031       0.4       7      57 ..      88     139 ..      84     154 .. 0.75
   2 ?   -1.8   0.0       1.4   1.8e+03     120     131 ..     200     211 ..     189     215 .. 0.76
   3 ?   -3.2   0.0       3.6   4.6e+03      59      81 ..     293     313 ..     278     328 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00031
                 HHHHHHHHHHHH-SEEEEE--TTSSTTH.HHHHHHHHHHHTTS-SEEEEEE- CS
        PhoH   7 keQkeylealkkndivfaiGpaGtGKty.lavalavealkkkkvkriiltrp 57 
                 ++ +e+++ l++n +++ iG++G+GK+  +   l  +++k+kk   i +t+p
  CCD23708.1  88 QNKDEIMNHLRSNPVTVLIGETGSGKSTqIPQFLLDDLYKDKKHGSIAVTQP 139
                 5678899*******************65155445455566677777777666 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
                 SEEEEE-SGGG- CS
        PhoH 120 dafvilDEAQnt 131
                  ++vi+DEA + 
  CCD23708.1 200 YSVVIIDEAHER 211
                 489******875 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.6
                 --TT----SS---------TTTH CS
        PhoH  59 veageelGflpgdleekvdpylr 81 
                  ++g+ l flpg+  e +d  + 
  CCD23708.1 293 EQMGDILCFLPGQ--EEIDKAVT 313
                 3558889999995..55554443 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       4.4   5.6e+03      52      80 ..       9      51 ..       4      84 .. 0.59
   2 ?   11.6   0.1   0.00024      0.31       7      28 ..      96     117 ..      90     157 .. 0.79
   3 ?   -1.6   0.0       2.9   3.7e+03     105     135 ..     178     208 ..     140     210 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.4
                B-HHHCCHCEEEE-SS--S-TTSBHHHH..............H CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx..............x RF
    ABC_tran 52 qeleslrkeigvlpqepqlfpeltvren..............e 80
                +  + ++k+++ + ++p+ f+++tv+ +              +
  CCD23708.1  9 KIVTTTKKQSKSVVKKPHPFKRSTVHPTarkiirfeetetnnA 51
                5556677777778888888888887766666666655554442 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00024
                 EEETTSEEEEEESTTSSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLl 28 
                 +l+ + +++++Ge+G+GKSt +
  CCD23708.1  96 HLRSNPVTVLIGETGSGKSTQI 117
                 56778899************76 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.9
                 TSGGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 105 spssLSgGqkqrvalarallkkpkllllDEp 135
                 + + L  G+  r  ++   lk+ +++++DE+
  CCD23708.1 178 RLKYLTDGMLLRELMMDRNLKEYSVVIIDEA 208
                 3378888888888888889999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 4997.94
//
Query:       CCD23709.1  [L=598]
Description: hypothetical protein NDAI_0C00480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-44  149.8   7.1    8.4e-44  149.8   7.1    2.3  2  Kinesin      Kinesin motor domain
    9.4e-10   38.6   2.5    3.9e-09   36.6   2.5    2.1  1  Microtub_bd  Microtubule binding
  ------ inclusion threshold ------
       0.11   12.2   0.1       0.23   11.2   0.1    1.5  1  Herpes_UL51  Herpesvirus UL51 protein


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.8   7.1   1.4e-47   8.4e-44      23     333 .]      49     372 ..      24     372 .. 0.85
   2 ?   -6.8   8.6         3   1.8e+04     166     247 ..     480     564 ..     391     575 .. 0.60

  Alignments for each domain:
  == domain 1  score: 149.8 bits;  conditional E-value: 1.4e-47
                 TCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBCTTTSBSHHHHHHHHHHHHHHHCTTTH CS
     Kinesin  23 ekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegkeeeeeGiipraleelFesikkekeek 121
                 + +    +++k++ +  +++fkFd++f  +++q+e+ +    + ++++++Gyn + ++YG+++sGK+ T+  +   ++G+i   +e+lF+++++ ++++
  CCD23709.1  49 QDAFICDSNDKNTLKLDSQDFKFDNIFPTNSEQNEMLTV---STIKDLFDGYNQSFITYGKSNSGKSDTLFNE---KDGLIRLLFEQLFKKVQSLTADN 141
                 344455677788889999*****************9998...59***************************85...68***************999887 PP

                 ..........EEEEEEEEEEEEEET.TEEEETTSTTT........TSTSSEBEEEECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTS CS
     Kinesin 122 ..........ekefsvkvsylEiYn.eeiyDLLeskk........skkkkklkiredskkgevyvkgltevevksaeevlellekgeknrkvaetklne 201
                             +f++++s++Ei+  e+iyDLL+++         s k ++ +i+e+  kg+ +vk+l+++++ s+++++++++ g ++ +    +  +
  CCD23709.1 142 nnnntregnnILTFNFSLSMMEIFSsEKIYDLLSNEYtkdnpilkSLKVHQHDIIENGIKGDKHVKNLSHIQIASLDDLQKWFKIGCQRSSAIINAGTA 240
                 89999999987899**********549*******99888888887666668999********************************9998876666666 PP

                 HHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHT..CCTSTSCGGGSHHHHHTGGGH CS
     Kinesin 202 eSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaek..kkskhipYRdSkLTrlLqdsL 298
                 +  RS +++  +++ ++++ +++   k s+l+++DL G ++ +k+    + + +E ++ N+ ++  ++ i++L+++     +   Y+dS L ++Lqd++
  CCD23709.1 241 KEKRSNSIIISKIHLEQVNPKDQ-LYKLSTLSFIDLYGIDKFTKKDI--QLTNDEMKKLNTLMSSFQNLITTLSDPksLPYTSSLYKDSALNKILQDYI 336
                 66666666666666666666555.569***************99996..4558***********************3333445569************* PP

                 SSSSEEEEEEEE.-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 299 gGnsktlmivtv.spssenleetlstlkfaerakei 333
                 gGnskt+ i+   sps  + ee ++ lkfa   k+i
  CCD23709.1 337 GGNSKTTFIIPFpSPSIIQHEELIEMLKFAMGLKSI 372
                 *****987775449999*************988876 PP

  == domain 2  score: -6.8 bits;  conditional E-value: 3
                 EETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTC...EEEEEEEEEEE.EEEECCCHHHHS CS
     Kinesin 166 yvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkeete...ekvkisklnLv.DLAGsErasktg 247
                  +k+l   +++++ +++  +e  ++  +  + +l  + S+ Ha+ t++l+  ++ +++e   ++  is+  L   LA  E++++++
  CCD23709.1 480 LLKKLM-DKCEDVAKLQVEIEAEKNTNSKLKQDLKYSASKQHALETMNLKLLEQLQNQEkecKELLISEERLKrELASAENLKNSK 564
                 333332.2344444444445555555555566777777888887777766554443333123335555555532666666666666 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   2.5   6.6e-13   3.9e-09      22     129 ..      35     142 ..      30     174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 6.6e-13
                  -EEEEEEECCCS-T...EEEETTT.....TTTEEEE-SEEEECTTHCCCCCCCCHHHHHHHHTT--EEEEEEES................ST-HCHHH CS
  Microtub_bd  22 iRvfarvrpelesek..akikfpe..eekkkkkefsFdrvfeseseqeevfeeisqlvqsaldgynvcifaygqTGsGKtyTmegeeeeagmiprave 115
                  iRv  +++  + +++  +  + ++  + k  +++f+Fd +f+++seq+e+   +   ++  +dgyn + ++yg+  sGK+ T+ +  e++g i  ++e
   CCD23709.1  35 IRVVLNLSSLKANQQdaFICDSNDknTLKLDSQDFKFDNIFPTNSEQNEMLT-V-STIKDLFDGYNQSFITYGKSNSGKSDTLFN--EKDGLIRLLFE 128
                  77777777766665444223333244777899*************9998875.3.3456678*********************99..99********* PP

                  HHHHHHHCCTSCCC CS
  Microtub_bd 116 eifetiselkekgw 129
                  ++f+++++l+  + 
   CCD23709.1 129 QLFKKVQSLTADNN 142
                  ******99865433 PP

>> Herpes_UL51  Herpesvirus UL51 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.9e-05      0.23      74     147 ..     454     525 ..     444     533 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.9e-05
  Herpes_UL51  74 nleclkrhhpgeenPgldavveahrenakrladtclaailhlylsvGaadkstdalveqairltaesevvmsdv 147
                   le + +h  + enP  ++  + h e  k+l d c   + +l + + a  k+t++ ++q ++  a  + +++ +
   CCD23709.1 454 SLEQVLEHISTSENPKSKTETNEHDELLKKLMDKCE-DVAKLQVEIEAE-KNTNSKLKQDLKYSASKQHALETM 525
                  6888999****************************7.578999999987.899999999999999988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2114  (0.11791); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4078.89
//
Query:       CCD23710.1  [L=392]
Description: hypothetical protein NDAI_0C00490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   5.2e-120  401.2   4.2   5.8e-120  401.1   4.2    1.0  1  V-ATPase_C  V-ATPase subunit C
    0.00067   19.9   0.2       0.96    9.8   0.0    2.6  2  NUC130_3NT  NUC130/3NT domain


Domain annotation for each model (and alignments):
>> V-ATPase_C  V-ATPase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.1   4.2  6.5e-124  5.8e-120       1     370 []      11     386 ..      11     386 .. 0.94

  Alignments for each domain:
  == domain 1  score: 401.1 bits;  conditional E-value: 6.5e-124
  V-ATPase_C   1 ywLisvpg.....ektseqtleelnkalskksknselykfeipdlkvgtLDsLvalsddLgKldafvesvvkKvartlaevledqkdkleenllvngks 94 
                 ++L+s+p+     ++ + +t ++l+++l   ++++ +++f++p++kvg+LDsL+  s++L+K+d+++e +++K+ ++l+ + e +++++ ++l +n+++
  CCD23710.1  11 FILLSLPLnvkpvTTPDLDTDSWLQQNLL--NGKALVSNFNVPEFKVGSLDSLIVDSEELKKIDTQIETSLSKIIEILNGLNE-SSSNAYRTLPINNVP 106
                 67888888777767778889999999998..4569*********************************************955.555799********* PP

  V-ATPase_C  95 lesYltkFqWdeakypvkqslkelvdiiskevtqidedlktksaaYnelksslqalerkktgnLltrsLadlvkkedfvldseyLttllViVpknseke 193
                 + +Yl++FqW+ +k++ ++s+kel+d is+e +q+d+d+++++++Yn++k++l+a+erkktg+L++rsL+d+vk+edfvl+s++Ltt+l++Vpkn +++
  CCD23710.1 107 VPQYLENFQWQVRKFKLDKSIKELIDLISNESAQLDTDVRATFTNYNNAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSDHLTTVLIAVPKNLKSD 205
                 *************************************************************************************************** PP

  V-ATPase_C 194 wlksYekltdmVVPrSakklaeDneyaLftVtlfkkvveefkakarekkfivReFsydeeeleeekeeltkleaekkkqegelvrllkvnFsevfvawi 292
                 ++ksYe++td VVP Sa  +a D+ey L++V+lfkk ++ef + arekkfi+ReF+y+ee +++ k+e++++++ +++++ +lvrl+k+++ +vf+ w+
  CCD23710.1 206 FEKSYERMTDNVVPGSAGIIATDSEYILYNVHLFKKNAQEFVNVAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWF 304
                 *************************************************************************************************** PP

  V-ATPase_C 293 HlkalrvFvEsvLRYGlpvnFq.alllqpekkkekklreeLnklfahldss....akkgkvkkddsldiaglslgqqeyfpYv 370
                 H+k+lrv+vEsvLRYGlp++F+  ++  p +k+ +k+++eL ++f+ l+++    +kkgk++++d+  ++  +l +++y+p+v
  CCD23710.1 305 HIKTLRVYVESVLRYGLPPHFNtKIVAVP-PKNLEKCKKELIEAFGFLGGNafvkDKKGKINSKDTSLNQYSTLIDTDYEPFV 386
                 **********************7777777.9********************888877778777775445555899*******8 PP

>> NUC130_3NT  NUC130/3NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00011      0.96      17      39 ..     127     149 ..     120     151 .. 0.89
   2 !    7.3   0.1   0.00067         6      15      41 ..     261     290 ..     258     290 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00011
  NUC130_3NT  17 pqeLselLlehhsvLhpdlRkkl 39 
                  +eL++l+++++++L++d+R ++
  CCD23710.1 127 IKELIDLISNESAQLDTDVRATF 149
                 689*****************997 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00067
  NUC130_3NT  15 efpqeLselLlehhs...vLhpdlRkklvq 41 
                 ++++eL++ L+++h+   +L++ lR +lv+
  CCD23710.1 261 NYSEELIDQLKKEHDsaaSLEQSLRVQLVR 290
                 6899**********9999*********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2930.66
//
Query:       CCD23711.1  [L=1088]
Description: hypothetical protein NDAI_0C00500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-51  172.9 327.7    4.5e-11   43.4  38.3   11.5 11  Nucleoporin_FG  Nucleoporin FG repeat region
    1.1e-33  116.4   0.0    2.1e-33  115.6   0.0    1.4  1  Nucleoporin2    Nucleoporin autopeptidase


Domain annotation for each model (and alignments):
>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7  37.0   6.1e-08   0.00055       1      89 [.       7      89 ..       7      91 .. 0.79
   2 !   16.5  33.1   1.3e-06     0.011       2      91 .]      89     166 ..      82     166 .. 0.65
   3 !   29.1  30.6   1.5e-10   1.3e-06       2      91 .]     126     209 ..     125     209 .. 0.87
   4 !   28.4  34.7   2.5e-10   2.3e-06       7      91 .]     184     269 ..     183     269 .. 0.86
   5 !   43.4  38.3     5e-15   4.5e-11       6      91 .]     246     328 ..     243     328 .. 0.91
   6 !   36.9  30.3   5.3e-13   4.8e-09       9      81 ..     278     351 ..     277     352 .. 0.87
   7 !   34.8  38.3   2.5e-12   2.3e-08       1      91 []     342     424 ..     332     424 .. 0.89
   8 !   30.0  36.2   7.9e-11   7.1e-07       7      90 ..     385     471 ..     384     473 .. 0.84
   9 !   32.4  31.6   1.4e-11   1.3e-07       9      88 ..     470     543 ..     467     545 .. 0.82
  10 ?    0.1  57.2      0.17   1.5e+03       6      91 .]     550     643 ..     536     699 .. 0.84
  11 ?   -1.9   2.1       0.7   6.2e+03       7      41 ..     690     729 ..     683     758 .. 0.53

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 6.1e-08
  Nucleoporin_FG  1 glFGaaatstsgglFGststtatstgglFG...asstatatasgg.glfgatsqtaasgglFGstnattqtta.tgglFGstaataqqttsggl 89
                    ++FG    ++++++FGst++t   t+ +FG   ++s+++++a++g g fg+  ++++++g+FG+tna+tqt++ +gglFG++ a++    +++ 
      CCD23711.1  7 SMFG--GGTNTSQPFGSTAST---TTPAFGglgNNSNPQSNAQSGfGGFGN--TSNSNTGMFGNTNANTQTNSaGGGLFGQPVANT----ANSP 89
                    6899..788999*********...666666666666666666666599998..8999*************9999******888776....4444 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.3e-06
  Nucleoporin_FG   2 lFG...aaatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqqttsgglFG 91 
                      FG   +++++t++++FGs + t  +++++FG      a++s+++ fg  ++++ +gglFG++n+t+     +++FG++++++ q+ +++ FG
      CCD23711.1  89 PFGslsNNTNTTNTNAFGSGAGT--ASNNAFG------ANTSTASPFGM-NKPTVGGGLFGQSNNTQ-----NSMFGQQQQQQ-QPGQTNAFG 166
                     34444445555555555555555..4555555......33444468888.899***********886.....589**888877.677777888 PP

  == domain 3  score: 29.1 bits;  conditional E-value: 1.5e-10
  Nucleoporin_FG   2 lFGaaatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta.tgglFGstaataqqttsgglFG 91 
                      FG ++++ +gglFG++++t   ++++FG++++++ ++ ++++fg+   +++ +++FGs+++++ +++ ++glFG++ +t++   +gglFG
      CCD23711.1 126 PFGMNKPTVGGGLFGQSNNT---QNSMFGQQQQQQ-QPGQTNAFGQ---PKPMTNAFGSASNSAGSATgSTGLFGGALNTNAGGGGGGLFG 209
                     69999999************...99****544444.444446***9...99**********99999889***********98899999**9 PP

  == domain 4  score: 28.4 bits;  conditional E-value: 2.5e-10
  Nucleoporin_FG   7 atstsgglFGststt..atstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta....tgglFGstaataqqttsgglFG 91 
                     +++ s+glFG++ +t     +gglFG++++a+   +g+g+fg+  +++++gglFG+++ ++q+++    +gglFG+++at+   t+ g+FG
      CCD23711.1 184 SATGSTGLFGGALNTnaGGGGGGLFGQNNNANRVGTGAGMFGQ--NQQTAGGLFGQNQRNNQQQQqgatGGGLFGQSNATN---TGMGMFG 269
                     567899***99999977778889***777777777777****9..7999********9999998899999*****999987...9999*99 PP

  == domain 5  score: 43.4 bits;  conditional E-value: 5e-15
  Nucleoporin_FG   6 aatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqqttsgglFG 91 
                     ++ +t+gglFG++++t +++ g+FG+++++++++  gg+fg+++++++sgg+FG++++++++  +gglFG+ ++++ q++++glFG
      CCD23711.1 246 QQGATGGGLFGQSNAT-NTGMGMFGNQQNNQQQQGRGGMFGQANTQQQSGGMFGQSANNSNQL-GGGLFGNRQPQQ-QQQGTGLFG 328
                     5678999*********.9*******8888888888889*******************999876.******888876.79******9 PP

  == domain 6  score: 36.9 bits;  conditional E-value: 5.3e-13
  Nucleoporin_FG   9 stsgglFGststtatstgglFGasstatatasggglfgat..sqtaasgglFGstnattqtta.tgglFGstaata 81 
                     +  gg+FG+++t+ +++gg+FG +s++++++ ggglfg+   +q+++++glFG++++++q+++ +gglFGs+ +++
      CCD23711.1 278 QGRGGMFGQANTQ-QQSGGMFG-QSANNSNQLGGGLFGNRqpQQQQQGTGLFGQQQQQPQQNTaSGGLFGSKPTNT 351
                     56789********.99******.566666666777****9999***************999999******998875 PP

  == domain 7  score: 34.8 bits;  conditional E-value: 2.5e-12
  Nucleoporin_FG   1 glFGaaatstsgglFGststtatstgglFGasstatatasggglfgat.sqtaasgglFGstnattqttatgglFGstaataqq.ttsgglFG 91 
                     glFG  +++t++glFG+++ + +++++ FG   +a++++s+g lfg++ ++++++gglFG++n+++q+    g+FG++++t    ttsgglFG
      CCD23711.1 342 GLFG--SKPTNTGLFGQNNMQ-QQQQQPFG---AAANQQSTG-LFGSNtNTQTSGGGLFGNANQQQQA---PGVFGQANNTGMGgTTSGGLFG 424
                     6999..89999*********9.999999**...566666666.****99999999********99885...8****999999889*******9 PP

  == domain 8  score: 30.0 bits;  conditional E-value: 7.9e-11
  Nucleoporin_FG   7 atstsgglFGststtatstgglFGasstatatasgg.glfgatsqtaasgglFGstnattqtta....tgglFGstaataqqttsgglF 90 
                     +++++gglFG+++++ +++ g+FG+++++    +++ glfga + +a+++glFG++n+t++       +gglFG++++++ qt+++g  
      CCD23711.1 385 TQTSGGGLFGNANQQ-QQAPGVFGQANNTGMGGTTSgGLFGA-KPNATPTGLFGQSNNTNTLGGmgstGGGLFGQQQQQQPQTQQQGTL 471
                     78999**********.999*****55555544444448****.899**************988799999**********9998877755 PP

  == domain 9  score: 32.4 bits;  conditional E-value: 1.4e-11
  Nucleoporin_FG   9 stsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqqttsgg 88 
                     + +gglFG+++t+++stgglFG   +a+++++ +  fg+ ++ +++gglFG++++t +t  +gglFG++++t++++ +gg
      CCD23711.1 470 TLGGGLFGNKPTSQPSTGGLFG---QANTNQQPS-QFGQ-NTVTTGGGLFGQQPQTGTTG-GGGLFGANTNTNTTQLGGG 543
                     5679******************...333444444.6999.899***********999987.*********9997766665 PP

  == domain 10  score: 0.1 bits;  conditional E-value: 0.17
  Nucleoporin_FG   6 aatstsgglFGststtatstgglFGasstatatasggglfgat.......sqtaasgglFGstnattqtta....tgglFGstaataqq..ttsg 87 
                      +++t+gglFG+t+++  +tgg+ G  ++++++a+gg lfg++       ++t+++gglFG+++a  +tt+    +g+lFG++++ a++   + g
      CCD23711.1 550 PNNTTGGGLFGATNNA--NTGGILG--GNTANNATGG-LFGNNkptlggaTNTTSTGGLFGNKAALGSTTTtagqSGSLFGAAKPVATAptGNLG 639
                     4667788999999999..8888888..6666666666.999999999998888899999999988777766677889999988888877656667 PP

  Nucleoporin_FG  88 glFG 91 
                     glFG
      CCD23711.1 640 GLFG 643
                     7888 PP

  == domain 11  score: -1.9 bits;  conditional E-value: 0.7
  Nucleoporin_FG   7 atstsgglFGststtatstgglFG.....asstatatasg 41 
                     +++t+g+  G+ +++++  ++lF      +s t+++++++
      CCD23711.1 690 QAQTQGQGQGQLQEQPPVDNNLFKtvnlpSSITNSTNPTT 729
                     3334444444444445555555554444333333333333 PP

>> Nucleoporin2  Nucleoporin autopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.0   2.3e-37   2.1e-33       2     140 ..     944    1081 ..     943    1083 .. 0.97

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 2.3e-37
                    TTEEEES-HHHHHTS-HHHHTSBSS-EEEETTTEEEEESS-B--GGG-HHHHBTTTEEEETTEEEESSSCCC.---TTSTT-S-EEEEESS---B CS
  Nucleoporin2    2 gdYytePsleeLkkmseeelsavkdFtvgrkgvGsveFlepvdlssldldeiagkivklekkevtVYpdeekekppvGegLNkpaeitLenvwpk 96  
                    ++Yy++Ps+++Lk+ +  +l++v++++vg++ +G+veFl+pvdls++ +d+i+gk+v++e++++ + + + +++ + Geg+N+pa+it++n++p+
    CCD23711.1  944 NGYYISPSIDSLKSKTLVQLRTVSNLKVGHEVFGKVEFLKPVDLSNILIDSICGKLVQFEPRSCFISKPT-SQRVAKGEGMNVPARITIYNCFPV 1037
                    58****************************************************************9999.559********************* PP

                    -TTT--B---TT-HHHHHHHHHHHH-SSSEEEEEETTTTEEEEE CS
  Nucleoporin2   97 dkatkeeikdkskarvkkhieklkkvegteFvsydpetgtwtfk 140 
                    dk+t+++ikd +++ vk+hi  +kk +gt+F+sydp  gt++f 
    CCD23711.1 1038 DKSTRKPIKDINHPLVKRHIMSMKKNNGTKFESYDPLVGTYVFV 1081
                    ******************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1088 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      166  (0.00925874); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 7473.85
//
Query:       CCD23712.1  [L=192]
Description: hypothetical protein NDAI_0C00510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-21   75.2   0.2    3.3e-21   74.5   0.2    1.4  1  SRF-TF    SRF-type transcription factor (DNA-binding and dime


Domain annotation for each model (and alignments):
>> SRF-TF  SRF-type transcription factor (DNA-binding and dimerisation domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.2   1.8e-25   3.3e-21       1      48 []      25      72 ..      25      72 .. 0.99

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 1.8e-25
      SRF-TF  1 kIeneraRqvtFsKRrnGLfKKAsELsvLcgvevavvvfspngklytf 48
                +Ien+++R+vtFsKR+ G++KKA ELsvL+g++v ++v+s++g +ytf
  CCD23712.1 25 FIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF 72
                6**********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       916  (0.0510904); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1470.77
//
Query:       CCD23713.1  [L=152]
Description: hypothetical protein NDAI_0C00520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-56  189.8   0.0    2.2e-56  189.6   0.0    1.0  1  NDK       Nucleoside diphosphate kinase


Domain annotation for each model (and alignments):
>> NDK  Nucleoside diphosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.6   0.0   1.2e-60   2.2e-56       1     134 [.       5     138 ..       5     139 .. 0.99

  Alignments for each domain:
  == domain 1  score: 189.6 bits;  conditional E-value: 1.2e-60
                 EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEECE-HHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHHHHHHHHH--SSTTTSSTTS CS
         NDK   1 ertlvliKPdavkrgligeiisrleekglkivalkmlrlteeqaeehYaehkgkpffeelvefmtsgpvvalvlegedaiekvreliGatnpaeaapgt 99 
                 ert++ +KPd+v+rgl+ +i+sr+e++g+k+v++kml+++ee++ +hYaeh gkpff+++v+fm+sgp+va v+eg+d++++ r+++Gatnp  +apgt
  CCD23713.1   5 ERTFIAVKPDGVQRGLVSQILSRFEKRGYKLVGIKMLNASEELLTQHYAEHVGKPFFPKMVSFMMSGPIVATVWEGKDVVKQGRTILGATNPLSSAPGT 103
                 89************************************************************************************************* PP

                 HHHHH-SSSTT-SEEE-SSHHHHHHHHHHHSTGGG CS
         NDK 100 iRadfgvslgeNlvHgSdseesaereiklfFkeee 134
                 iR+dfg++lg+N++HgSds esaerei+l+Fk+ee
  CCD23713.1 104 IRGDFGIDLGRNVCHGSDSVESAEREINLWFKSEE 138
                 ********************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1198.66
//
Query:       CCD23714.1  [L=221]
Description: hypothetical protein NDAI_0C00530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-25   87.0   0.6    1.4e-24   86.5   0.6    1.2  1  Bap31      Bap31/Bap29 transmembrane region
     0.0084   15.0   0.0     0.0094   14.8   0.0    1.1  1  Anoctamin  Calcium-activated chloride channel
  ------ inclusion threshold ------
       0.03   14.1   0.2        4.1    7.3   0.0    3.1  3  LapA_dom   Lipopolysaccharide assembly protein A domain
      0.056   13.7   0.7       0.11   12.7   0.7    1.5  1  DUF5082    Domain of unknown function (DUF5082)


Domain annotation for each model (and alignments):
>> Bap31  Bap31/Bap29 transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.6   3.1e-28   1.4e-24       1     132 [.       1     145 [.       1     148 [. 0.89

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 3.1e-28
       Bap31   1 msLqytlvaalLvaeivvvllLvlPlpsavrkklfksllvsklsaklqialkillifllllflDavrrvr.kvseeeeea............aaklkle 86 
                 msL++++ ++lL++e+ v+++ vlPlp+++rk ++k  + ++ s++ +++++il +++ llf+D+++r + +v++ ++++              +  + 
  CCD23714.1   1 MSLYFMALFGLLILEMSVLFISVLPLPNKIRKGIYKAYFKTTSSQESKTIIIILSVLVSLLFIDSWKRSQfRVTTYQSKQyqnvrrggsgneGIDDAPV 99 
                 9*****************************************************************975424444444445569****99774456788 PP

       Bap31  87 aesevqarkFyaQRNlYlsGftLfLslvlrrlvtliselakleakl 132
                 +  +  a++ y QRN+Y+sGf+L+ ++ + ++++++++l+k ++ +
  CCD23714.1 100 TPLQALASRAYNQRNVYISGFILYFLVGIPTVMSIVRRLVKYDDLI 145
                 89999**********************************9987765 PP

>> Anoctamin  Calcium-activated chloride channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.1e-06    0.0094      22      87 ..       2      85 ..       1     172 [. 0.61

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.1e-06
   Anoctamin 22 allppavlGlllflyglati...................tlfdneltvvfalfmviWatlflelWkrreaelaykWgtsdfeeee 87
                +l ++a++Gll+  ++   i                   t+ ++e+  +  ++ v+ + lf++ Wkr + +++  ++ ++++++ 
  CCD23714.1  2 SLYFMALFGLLILEMSVLFIsvlplpnkirkgiykayfkTTSSQESKTIIIILSVLVSLLFIDSWKRSQFRVT-TYQSKQYQNVR 85
                58999****995553333336778888888888888886555556999999*****************98876.34443344444 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.54   2.4e+03      24      32 ..      53      61 ..      42      75 .. 0.65
   2 ?    7.3   0.0   0.00091       4.1      28      61 ..     117     150 ..     115     153 .. 0.89
   3 ?    3.2   0.1     0.017        77      47      61 ..     184     198 ..     171     199 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.54
    LapA_dom 24 lvafgiGal 32
                ++++++ +l
  CCD23714.1 53 ILSVLVSLL 61
                333333332 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00091
    LapA_dom  28 giGallgwllslwsylrlrrelrrlkkkikklek 61 
                 + G++l +l+++++++   r+l + +  ik+++k
  CCD23714.1 117 ISGFILYFLVGIPTVMSIVRRLVKYDDLIKEQKK 150
                 67**************999999999988888876 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.017
    LapA_dom  47 relrrlkkkikklek 61 
                 + l+ l+k+ik+le+
  CCD23714.1 184 ISLKGLQKQIKHLEN 198
                 67899********95 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.7   2.5e-05      0.11      95     123 .]     170     198 ..     168     198 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.5e-05
     DUF5082  95 eEIerLenqiseaqgvldtlqsqlnslkn 123
                 +EIe Len+++e+ ++l+ lq+q++ l+n
  CCD23714.1 170 KEIEGLENDLYEKMISLKGLQKQIKHLEN 198
                 7************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1013  (0.0565006); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1608.53
//
Query:       CCD23715.1  [L=1112]
Description: hypothetical protein NDAI_0C00540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-39  134.6   4.9    5.4e-22   78.4   0.6    3.4  3  CorA      CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.4e-10   4.2e-06       6      67 ..     621     682 ..     618     689 .. 0.93
   2 !   29.7   0.1   2.2e-11   3.9e-07      61     146 ..     774     860 ..     762     914 .. 0.88
   3 !   78.4   0.6     3e-26   5.4e-22     145     292 .]     952    1108 ..     946    1108 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.4e-10
        CorA   6 WldlsspteeeleeLaeelgldelaledlldseerprvedyddylllvlpsveldkseeeee 67 
                 Wld+s+pteee++ +++ +g+++l++ed+  +e r +ve ++dy l+ ++s+++  + + ++
  CCD23715.1 621 WLDVSNPTEEEMKVISKAFGIHPLTTEDIFLGEVREKVELFKDYYLICFRSFDIVAERHVRR 682
                 ****************************************************9988877665 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 2.2e-11
        CorA  61 kseeeeeevplsillgdnflitvrreplealdevikrlk.deggkpkspgellyrlldeivdrlfellekleeeldeledel...edstk 146
                  +e e e++++ i++ +  l+t++ +p++   +v++r++  ++  + ++ ++ y+l+d i+d + + +e +e+e+ e+ed +   +   +
  CCD23715.1 774 PREGELEPLNVYIIVFRTGLLTFHFAPTPHPINVRRRARlLKDYLTVTSDWIAYALIDDITDAFGPMIELIEDEVYEIEDAIlkmN---H 860
                 45566667799****************************8778999999********************************95542...3 PP

  == domain 3  score: 78.4 bits;  conditional E-value: 3e-26
        CorA  145 tkkeilrelaqlrrrlvklrralapnrevlkrllakaddkllddedkey...lrdlldelerllemlealrerleslqdtyssllser.......lN 231 
                  +k ++lr++ + r+r+  + r l  + +v+k + ++ ++ + +  ++e    l d++d++  ++  l+++ ++l++ +++y ++++         +N
  CCD23715.1  952 KKGDMLRRIGECRKRVMSILRLLGSKADVIKGFSKRYNGQWDTVSQSEIgmyLGDIQDHIITMVSSLNHYEKLLSRSHSNYLAQINIDmtkvnndMN 1048
                  56799*************************9999977777776666554444********************************99999999999** PP

        CorA  232 rvmkvLTvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallailllfwfkr 292 
                  +v+ ++T+l +i+lP+ +itG++GmN+   P+++++   +fv++l++m+ la + +++ kr
  CCD23715.1 1049 DVLGKITILGTIVLPMNVITGLWGMNVI-VPGQFNESLKWFVGILISMLTLAYVAYIYTKR 1108
                  ****************************.*****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1108  (0.0617993); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 7443.96
//
Query:       CCD23716.1  [L=349]
Description: hypothetical protein NDAI_0C00550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      5100  (0.284455); expected 358.6 (0.02)
Passed bias filter:                      901  (0.0502538); expected 358.6 (0.02)
Passed Vit filter:                       509  (0.0283898); expected 17.9 (0.001)
Passed Fwd filter:                       146  (0.00814323); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.03u 0.39s 00:00:02.42 Elapsed: 00:00:00.57
# Mc/sec: 1829.40
//
Query:       CCD23717.1  [L=972]
Description: hypothetical protein NDAI_0C00560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-07   30.2  13.5     0.0037   18.0   2.0    3.0  2  zf-C2H2_4    C2H2-type zinc finger
      9e-06   25.9  25.6    7.4e-05   23.0   4.0    3.6  3  zf-C2H2      Zinc finger, C2H2 type
    3.6e-05   24.0  18.1    0.00064   20.0   3.4    3.7  3  zf-H2C2_2    Zinc-finger double domain
     0.0042   17.3  10.1        0.3   11.4   1.0    2.8  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
          2    8.4   5.4         12    6.0   0.5    2.6  2  zf-LYAR      LYAR-type C2HC zinc finger
          3    8.4  12.1       0.52   10.8   0.9    3.7  3  zf-C2HE      C2HE / C2H2 / C2HC zinc-binding finger


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   4.1   3.4e-06      0.01       1      24 []     915     938 ..     915     938 .. 0.98
   2 !   18.0   2.0   1.2e-06    0.0037       2      23 ..     945     966 ..     944     967 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.4e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkthH 24 
                 fkC+ C k F+++++L+rH++++H
  CCD23717.1 915 FKCSDCEKAFRRSEHLKRHFRSVH 938
                 8**********************9 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.2e-06
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                  C +C+k+Fs++++L++Hlkth
  CCD23717.1 945 GCMFCTKRFSRSDNLSQHLKTH 966
                 6********************* PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   3.7         6   1.8e+04       9      21 ..     516     528 ..     515     533 .. 0.71
   2 !   23.0   4.0   2.5e-08   7.4e-05       1      23 []     915     938 ..     915     938 .. 0.97
   3 !   17.4   2.4   1.5e-06    0.0045       3      23 .]     946     966 ..     944     966 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6
                 EESSHHHHHHHHH CS
     zf-C2H2   9 sFkrksnLkrHir 21 
                 sF+++sn ++H  
  CCD23717.1 516 SFSSSSNNNNHNH 528
                 6888888888854 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.5e-08
                 EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                 +kC+dC k F+r+++LkrH r+ H
  CCD23717.1 915 FKCSDCEKAFRRSEHLKRHFRSvH 938
                 8********************999 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 1.5e-06
                 ETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   3 CpdCgksFkrksnLkrHirtH 23 
                 C  C+k+F+r++nL +H++tH
  CCD23717.1 946 CMFCTKRFSRSDNLSQHLKTH 966
                 999*****************9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.9   0.00027      0.79      12      25 ..     912     925 ..     908     926 .. 0.89
   2 !   20.0   3.4   2.1e-07   0.00064       1      25 [.     929     954 ..     929     955 .. 0.92
   3 ?    2.5   0.6     0.074   2.2e+02       1      11 [.     958     968 ..     958     972 .] 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00027
   zf-H2C2_2  12 ekpyeCplCdkaFk 25 
                  kp++C+ C kaF 
  CCD23717.1 912 NKPFKCSDCEKAFR 925
                 59***********6 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 2.1e-07
   zf-H2C2_2   1 nLrrHirk.HtgekpyeCplCdkaFk 25 
                 +L+rH+r+ H  e+p+ C++C k+F+
  CCD23717.1 929 HLKRHFRSvHSAERPFGCMFCTKRFS 954
                 79*****65****************8 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.074
   zf-H2C2_2   1 nLrrHirkHtg 11 
                 nL++H+++H++
  CCD23717.1 958 NLSQHLKTHKK 968
                 8********85 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   1.0    0.0001       0.3       2      23 ..     915     936 ..     914     939 .. 0.95
   2 !    9.8   2.4   0.00033         1       4      26 ..     946     969 ..     943     969 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
                  CBBTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkS 23 
                  f C  C+K F  ++ l+ H++S
   CCD23717.1 915 FKCSDCEKAFRRSEHLKRHFRS 936
                  99*******************9 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00033
                  BTTTTBBBSSHHHHHCCTTS.HHH CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHlkS.KkH 26 
                  C  C K F+ + +l +Hlk+ KkH
   CCD23717.1 946 CMFCTKRFSRSDNLSQHLKThKKH 969
                  99******************9999 PP

>> zf-LYAR  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.5    0.0039        12       1      18 [.     915     933 ..     915     934 .. 0.79
   2 ?    4.2   0.4     0.014        42       1      18 [.     944     962 ..     944     964 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0039
     zf-LYAR   1 fsCiDCsktFdg.deykaH 18 
                 f C DC k F++ +  k H
  CCD23717.1 915 FKCSDCEKAFRRsEHLKRH 933
                 78*********95555666 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.014
     zf-LYAR   1 fsCiDCsktFdg.deykaH 18 
                 f C+ C k+F++ d+  +H
  CCD23717.1 944 FGCMFCTKRFSRsDNLSQH 962
                 66**********9999999 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       3.8   1.1e+04       7      33 ..     456     478 ..     451     490 .. 0.53
   2 ?   10.8   0.9   0.00017      0.52      27      58 ..     905     934 ..     887     940 .. 0.82
   3 ?    3.0   1.2     0.046   1.4e+02      35      61 ..     941     966 ..     937     969 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.8
     zf-C2HE   7 pledlpeelekdgeieslseeqskeli 33 
                 +++++p   ++ ++++  +++q+k+l 
  CCD23717.1 456 NFSNIP--TQERQQQQ--QQQQEKNLS 478
                 566666..33333332..344444443 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00017
     zf-C2HE  27 eqskelilktpLkCtrCganfgnkfpkLKeHL 58 
                 ++ +    ++p+kC  C+ + ++   +LK+H 
  CCD23717.1 905 TTIYDD-QNKPFKCSDCE-KAFRRSEHLKRHF 934
                 455556.79*********.999999*****97 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.046
     zf-C2HE  35 ktpLkCtrCganfgnkfpkLKeHLeee 61 
                 ++p+ C  C  + ++   +L +HL+++
  CCD23717.1 941 ERPFGCMFCT-KRFSRSDNLSQHLKTH 966
                 5799******.777777********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2702  (0.150706); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.48
# Mc/sec: 6061.90
//
Query:       CCD23718.1  [L=757]
Description: hypothetical protein NDAI_0C00570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-34  117.0   8.0    9.5e-27   94.0   0.1    3.6  3  Pkinase      Protein kinase domain
      2e-17   63.3   0.3    4.6e-13   49.1   0.0    3.4  3  Pkinase_Tyr  Protein tyrosine kinase
    0.00029   20.3   0.0      0.012   14.9   0.0    2.8  2  Kinase-like  Kinase-like
     0.0082   16.1   0.0      0.014   15.4   0.0    1.3  1  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.2   1.3e-09   5.9e-06       1      45 [.     117     163 ..     117     177 .. 0.84
   2 !   94.0   0.1   2.1e-30   9.5e-27      56     259 ..     214     469 ..     195     472 .. 0.81
   3 ?   -1.7   0.9      0.34   1.5e+03     226     253 ..     515     542 ..     486     565 .. 0.57

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.3e-09
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkv 45 
                 y+ ++k+G G+f+kVyk+ + +t++i+A+K i+k+ +++++   +++
  CCD23718.1 117 YKAITKIGVGQFSKVYKMSNVKTNQIFAMKLISKKPQNSSQYsmNQI 163
                 67889******************************999987644444 PP

  == domain 2  score: 94.0 bits;  conditional E-value: 2.1e-30
                 S.CTTB--EEEEEEE..SSEEEEEEE--TTEB.HHHHHHHHSS--HH.......................HHHHHHHHHHHHHHHHHHTTEE-SS-SGG CS
     Pkinase  56 k.hpnivrlyevfee..kdelylvleyvegge.ladllerkgslsee.......................eakkiakqilegleylHskgiiHrDlKpe 127
                 +  +nivrl+++f +  ++++++++e+++ ge l+++  ++++++ e                        a k+++ ++++l++l+++g+iHrD+Kp+
  CCD23718.1 214 NrYNNIVRLIQCFDDvySSDICIINEFCNLGElLWKRDYTSSTMTTEvnkqwlqligqddnedaaaktrrFALKVLWDMAHALKFLFDMGCIHRDIKPQ 312
                 3489***********999*************9633333344444444567788888888888888866655567889999******************* PP

                 GEEEE.TTTEEEE-SGTTSEESSSSCS....................BCTTTSCGGGS-HHHH.................TTSCBSHHHHHHHHHHHHH CS
     Pkinase 128 NiLid.ekgelKitDFGlakelesssk....................ltsfvgtseYlAPEvl.................keneyskkvDvWslGvily 188
                 NiL+d  ++  Ki+DFG +  +  + +                    l+++vgt+ +++PE+                   + + + k D WslGv++y
  CCD23718.1 313 NILCDsVNRCCKISDFGCSVIIPDKLPfqdsyqeknpsllmkcfqmeLNKIVGTPAFIPPELChfgkdptdediigndiqMSVDSGFKLDTWSLGVTIY 411
                 *****44555************999889999**********************************9998887777665533356699************ PP

                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeell 259
                 +ll++  pf g+++ + ++k+++q           +++++ + e+ +++  ++  ll+kdpkkR+ ++ ll
  CCD23718.1 412 CLLYNDLPFCGDNEFDAYHKIVTQ-----------SLSSKLNGELLNDL--IIMHLLEKDPKKRIHINTLL 469
                 **********99999988888888...........23333333333333..46899999999999988776 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.34
                 ..HHHTTS-HHHHHHHHHHT-SSGCCST CS
     Pkinase 226 klpeaseiseeakdllkkllkkdpkkRl 253
                 +l+++++ +++++++ +kl+k  +++  
  CCD23718.1 515 NLDKKKKENKSVQKFFQKLFKSSKNSKN 542
                 4444444455555555555554444433 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.1    0.0028        13       4      53 ..     120     165 ..     117     177 .. 0.74
   2 !   49.1   0.0     1e-16   4.6e-13      59     153 ..     215     334 ..     207     358 .. 0.82
   3 !    5.2   0.0    0.0024        11     185     257 ..     400     470 ..     391     472 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0028
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeak 53 
                   +k+G G+f+kV++ +      k+++  a+K ++++ +++++ ++ + +k
   CCD23718.1 120 ITKIGVGQFSKVYKMSNV----KTNQIFAMKLISKKPQNSSQYSMNQIMK 165
                  679**********99888....7788889999977777776655554444 PP

  == domain 2  score: 49.1 bits;  conditional E-value: 1e-16
                  -BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHT......................CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGG CS
  Pkinase_Tyr  59 khpnivkllgvct..keepllivteyvkgGdLlkfLrkk......................ekekltlkdllsfalqvAkGmeyLeskklvHrdlaar 132
                  + +niv+l+ +     ++ ++i+ e+++ G+Ll     +                      + ++ t +  l++ +++A+++++L ++ ++Hrd+  +
   CCD23718.1 215 RYNNIVRLIQCFDdvYSSDICIINEFCNLGELLWKRDYTsstmttevnkqwlqligqddneDAAAKTRRFALKVLWDMAHALKFLFDMGCIHRDIKPQ 312
                  6789*****9998777888************96443333566****************98544455555689************************** PP

                  GEEEEE.TTEEEE-STTTHEET CS
  Pkinase_Tyr 133 NvLlse.nkvvkisDfGLardi 153
                  N+L ++ n+++kisDfG +  i
   CCD23718.1 313 NILCDSvNRCCKISDFGCSVII 334
                  ****99688********88766 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0024
                  HHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHH.HHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 185 ksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelye.lmkkcweedpeeRptfselve 257
                  k D Ws Gv+++ ++   + p+ g ++ ++++k+ ++   +k +   e l++ ++++ +e+dp++R ++++l++
   CCD23718.1 400 KLDTWSLGVTIYCLLY-NDLPFCGDNEFDAYHKIVTQSLSSKLN--GELLNDlIIMHLLEKDPKKRIHINTLLT 470
                  569*********9998.899***999999999997665554444..3444441578899999999999998876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.031   1.4e+02      18      54 ..     121     157 ..     113     168 .. 0.84
   2 !   14.9   0.0   2.7e-06     0.012     206     254 ..     368     424 ..     283     431 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.031
  Kinase-like  18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskk 54 
                  + ++ g++s+v++  +++t++ +a+k  + + ++s++
   CCD23718.1 121 TKIGVGQFSKVYKMSNVKTNQIFAMKLISKKPQNSSQ 157
                  568999********************99888766654 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.7e-06
  Kinase-like 206 gfaPpEllgsrgg........ytrknktkmthkldaWqlGlviyriwclklPltlat 254
                  +f PpEl+   +            +  + + +kld+W lG++iy +   +lP+  + 
   CCD23718.1 368 AFIPPELCHFGKDptdediigNDIQMSVDSGFKLDTWSLGVTIYCLLYNDLPFCGDN 424
                  66777776432222233222223334566779********************98765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     3e-06     0.014     144     199 ..     277     334 ..     249     335 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3e-06
                 HHHHHHHHHHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 144 lleeleeqvlaalaallpg...elptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                  +++ ++ +l  l++ +++    ++++ +H+D++p+N+l d   +r+  + Df+++++ 
  CCD23718.1 277 AAAKTRRFALKVLWDMAHAlkfLFDMGCIHRDIKPQNILCD-SVNRCCKISDFGCSVII 334
                 23344444444455555545558******************.88999888899998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2172  (0.121145); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.50
# Mc/sec: 4530.23
//
Query:       CCD23719.1  [L=501]
Description: hypothetical protein NDAI_0C00580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-17   62.5   0.0    1.4e-15   56.9   0.0    2.8  2  Actin         Actin
  ------ inclusion threshold ------
      0.031   14.7   0.9        0.2   12.1   0.9    2.4  1  FtsA          Cell division protein FtsA
       0.69   10.2   4.6       0.17   12.1   0.6    2.0  2  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   2.3e-19   1.4e-15      25     352 ..      32     375 ..       8     398 .. 0.73
   2 ?    1.1   0.0      0.02   1.2e+02     383     399 ..     477     493 ..     461     496 .. 0.75

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 2.3e-19
       Actin  25 aPkavipslvgkprgrkveaklyvgdealtkrpelevrspvedGvvedwdaveelwehvlkeelkvdp............eehpllltepplnppkqre 111
                 +P++ ips + ++ ++ + + ++  ++ +++ +   + +++e+G + d +a+ + ++ ++++ l  ++            ++ p+ll    + ++ q e
  CCD23719.1  32 VPNLEIPSEIYRTFDELN-QCFKYHANPIESDSSCVLIKFIENGSIIDLEAFLQFIKLIYVSILDSKSkenpdtafstelSNIPFLLITHYTWSQPQLE 129
                 466777777776666643.34444445566667888999***********************999997777888888888888877766666667778* PP

       Actin 112 kalEivfEkfkvpalylaksavlsafas.gkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellss.......knvevtprylikk 202
                 k+++ +fE++k+   +l  s   ++ a  ++++ +++D+G+s+t ++p++d  +L+    ++++gG+ +++ lk  l s       ++++ +p + + +
  CCD23719.1 130 KITQFIFESLKILNAMLLPSSLSTSVAMiSLQNCCIIDIGKSHTDIIPIIDYTPLSFLASTLPMGGDNINKFLKTQLPSnftddqiESLKKSPIFEVLN 228
                 ***********988888888777777761567999********************************99999988877745554444444445555444 PP

       Actin 203 kkvveaessaekeelekltesyktleeeevleeiKesvcevsedpegdeekss.................sspeksYeLPDgseiklgeeRfkvpEiLF 284
                  + +     a+ ++ +++ +  +  ++ e ++   +  ++v++ +  d+++ +                 +  ++s++  +g+ei++g++Rf+    L 
  CCD23719.1 229 DEDI-----AKYSKYSDISDIINPRDNAEGMDADNDGGLDVAQIIISDRDTREllaererakteknvpnsELENNSFIDKNGDEITVGKQRFQGCKTLI 322
                 4444.....44666666666666666666666666666666666665333333333333333344445446666678888999**********999998 PP

       Actin 285 dpsligsesaleeekskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaql..a 352
                 +     s         k +g+    ++ i++c++       +niv++GG+s+++g++e l + l +   +
  CCD23719.1 323 EK---IS---------KRVGLVLSQIDDISKCKAA-----WENIVIVGGSSSIQGFKEALLTRLIKDhiV 375
                 75...22.........2469999999999999876.....78****************998888765442 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.02
       Actin 383 tfqqlwvskqEYeEqGs 399
                 +  ++ ++k+ YeE+G+
  CCD23719.1 477 SRDSFYITKEKYEEKGP 493
                 445899*********96 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.9   3.4e-05       0.2       1      85 [.     164     325 ..     164     439 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.4e-05
                 EEEEE-SSSEEEEEEETTEEEE..EEEES--HHHHHHHHHHHHT--H..HHHHHHHHHH--S--................................... CS
                 xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx................................... RF
        FtsA   1 alvDiGagktdvavaedgalvh..lrvigvggngitkdiakalrtav..eeAerikikyGsala................................... 60 
                 +++DiG ++td++ + d  +     +++++gg++i+k +++ l   +  ++ e++k++     +                                   
  CCD23719.1 164 CIIDIGKSHTDIIPIIDYTPLSflASTLPMGGDNINKFLKTQLPSNFtdDQIESLKKS-----Pifevlndediakyskysdisdiinprdnaegmdad 257
                 68***********999977666899************977777555422556677731.....122233333433333333343344444444444444 PP

                 ...........EEEEEHHHHH........................................GGGGSTTHHHHHHHH CS
                 ...........xxxxxxxxxx........................................xxxxxxxxxxxxxxx RF
        FtsA  61 ...........ekeigrkels........................................ggsalpnleelaera 85 
                                     s                                        g+   ++ ++l+e++
  CCD23719.1 258 ndggldvaqiiI--------SdrdtrellaererakteknvpnselennsfidkngdeitvGKQRFQGCKTLIEKI 325
                 444444444440........04444444445555555555555555588888888888888444444444444444 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   2.9e-05      0.17      10     100 ..     246     339 ..     240     342 .. 0.81
   2 ?   -2.6   0.2       1.1   6.5e+03      78      93 ..     382     397 ..     370     417 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.9e-05
                   -HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC...CTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  10 npeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgkak...kkkedaeeliaevkelkeelkaleaelkeleaelekl 100
                   np   +e + + ++  +dv++++  d+  rel +e e +++e+N  + e ++ +   k++++++  +++ +  k+ ++++++++  + ++++++
    CCD23719.1 246 NPRDNAEGMDADNDGGLDVAQIIISDRDTRELLAERERAKTEKNVPNSELENNSfidKNGDEITVGKQRFQGCKTLIEKISKRVGLVLSQIDDI 339
                   55666666777777889*********************************99752224448888888899999999999888888887777776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.1
                   HHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  78 elkeelkaleaelkel 93 
                   ++k e + l+a+ +++
    CCD23719.1 382 KIKREQDSLDAANAAA 397
                   2333333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       888  (0.0495287); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 3351.36
//
Query:       CCD23720.1  [L=309]
Description: hypothetical protein NDAI_0C00590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-36  123.7   6.7    1.1e-35  122.8   6.7    1.5  1  Histone   Core histone H2A/H2B/H3/H4


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   6.7   6.3e-40   1.1e-35      13     131 .]     186     305 ..     162     305 .. 0.85

  Alignments for each domain:
  == domain 1  score: 122.8 bits;  conditional E-value: 6.3e-40
                 XEEXXXXXXXXXXHT.TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH....TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHH CS
     Histone  13 ektapekkvsakker.kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivk...sekedlrisaeavlalqealEallvelfeeA 107
                 ++   +++  ++ e+  ++ ++ k ++ +y p+t al eirkyq+st+lli k+pf ++v+e++     e+++l ++++a++alqea+Ea+lv l+e+A
  CCD23720.1 186 SH---DRQHQRRLEEkAEQIREDKERRAKYTPSTLALYEIRKYQRSTELLISKIPFTKLVKEVTDqftVEEQQLHWQSMAIVALQEASEAYLVGLLEHA 281
                 22...222222323345667788889999************************************9999999*************************** PP

                 HHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone 108 nllakhaKRvTitpkDiqlArrlr 131
                 nlla haKR+T+++kDiqlArr+r
  CCD23720.1 282 NLLALHAKRITLMRKDIQLARRIR 305
                 **********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1214  (0.0677115); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2229.92
//
Query:       CCD23721.1  [L=936]
Description: hypothetical protein NDAI_0C00600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-23   82.8   0.4    2.4e-23   82.8   0.4    4.7  4  Eisosome1  Eisosome protein 1


Domain annotation for each model (and alignments):
>> Eisosome1  Eisosome protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.4      0.39   6.9e+03       4      18 ..     244     258 ..     242     303 .. 0.56
   2 !   82.8   0.4   1.3e-27   2.4e-23       3     122 ..     316     438 ..     314     441 .. 0.93
   3 ?   -3.9   8.8      0.86   1.5e+04      94     113 ..     703     722 ..     687     733 .. 0.43
   4 ?   -2.8   5.7      0.41   7.3e+03      95     117 ..     829     849 ..     824     857 .. 0.35

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.39
   Eisosome1   4 llaaArrnvkaqLed 18 
                 +l+ A+r++++++ +
  CCD23721.1 244 VLKGAERRANERITQ 258
                 556666666665543 PP

  == domain 2  score: 82.8 bits;  conditional E-value: 1.3e-27
   Eisosome1   3 allaaArrnvkaqLedidekvyadtgkvspslneewerkakaaaqaradkrsene.......agkvdiGggkfmdqeevdaiAarrvqPvLdeInekae 94 
                 +++++A+ +++ +L++id  + +     + ++nee++r a ++a+++++k +  +       +gkv++Ggg+++++e+vd++A++r +PvL++++e+++
  CCD23721.1 316 KVFNMAQVKTNMKLNSIDLAQKEV----QLFNNEEFNRLAITKATDEYKKGQLGRvktlkgqEGKVNLGGGLWVPWENVDKLAHERTDPVLKNVHETVA 410
                 899***************999888....*******************887666556677778************************************* PP

   Eisosome1  95 keRerdaelkleeeekkreaeeekarer 122
                 +e+++  ++k + ++++ ++e++k  +r
  CCD23721.1 411 REKKTTLDIKDRYKQNRLDWENWKTFQR 438
                 ************************9987 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 0.86
   Eisosome1  94 ekeRerdaelkleeeekkre 113
                 ++eRe+ a +++++e+++++
  CCD23721.1 703 AEEREKLASEEENTEQEQEQ 722
                 22222222222222222222 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 0.41
   Eisosome1  95 keRerdaelkleeeekkreaeee 117
                 +++++    k+++++++++++++
  CCD23721.1 829 RKKSQ--RVKRQQAQQQQQQKQQ 849
                 22222..2222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2786  (0.155391); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.45
# Mc/sec: 6198.32
//
Query:       CCD23722.1  [L=349]
Description: hypothetical protein NDAI_0C00610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-80  269.0  25.5    3.3e-80  268.7  25.5    1.1  1  Frag1      Frag1/DRAM/Sfk1 family
  ------ inclusion threshold ------
      0.067   14.0   0.6       0.13   13.1   0.6    1.4  1  Chorion_2  Chorion family 2
       0.15   11.9   7.3      0.028   14.3   2.0    2.1  2  DUF3611    Protein of unknown function (DUF3611)
        1.9    7.6   5.9        2.7    7.1   5.9    1.4  1  CitMHS     Citrate transporter


Domain annotation for each model (and alignments):
>> Frag1  Frag1/DRAM/Sfk1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.7  25.5   7.4e-84   3.3e-80       1     218 [.      11     255 ..      11     256 .. 0.99

  Alignments for each domain:
  == domain 1  score: 268.7 bits;  conditional E-value: 7.4e-84
       Frag1   1 yffllpliafilwlgmliamlvcavvqgpvdyvfmhkeqflPyISdigatnpeslffslalnlglflvilvallrfqr........lpplatksernln 91 
                 yffllp+iafi+w+gmli+ml+c+++qg+  y+fmh+eqf++yISdigatn+++lf+s+a+++gl++vi+v++++ qr        ++p++tk+ernl+
  CCD23722.1  11 YFFLLPWIAFIPWYGMLITMLICWAAQGHPIYWFMHSEQFPVYISDIGATNLRPLFISCAGWQGLGYVITVMCEFVQRygfknwygMQPWFTKDERNLI 109
                 79**************************555******************************************************************** PP

       Frag1  92 faalvlgligalglllvsifstaeyhsvHlvgavvffvfgflyvllqtalyykmgrhy.............................vwnkstisfrlk 161
                 +aal+lg ig+lgll++sifsta+yh+ H +++vvf++f++l++++ t +y+ mgrhy                             vwnk+ is++ k
  CCD23722.1 110 WAALILGAIGELGLLFLSIFSTARYHDAHTAMVVVFCIFMLLSIICLTTQYFIMGRHYallhpknyqnrdyntktihelkwwqwdgvVWNKFVISGYAK 208
                 *************************************************************************************************** PP

       Frag1 162 vvllilavvlailfgvffvrhkkkcgygayslsAifEWllafwfiiffltfsvDFyt 218
                 +v+++la+v+ai+fg++ +           s+sA fEWllafwf+++f+++svDFy 
  CCD23722.1 209 TVWMVLAIVFAICFGAIDND----------STSASFEWLLAFWFGVIFMIISVDFYL 255
                 *******************9..........*************************96 PP

>> Chorion_2  Chorion family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.6   2.8e-05      0.13      23      71 ..     283     330 ..     267     345 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.8e-05
   Chorion_2  23 iygrgrGnrgYgrsve.sgrrygdsspsdseaislaklalAapeagsyev 71 
                 + + ++Gn+ Y+   e +  +++++  +d ++   + +++Aa+++++ ++
  CCD23722.1 283 VRKDKHGNGMYDNDLEkQTNEHSQAIIQDTSSGTIS-SSSAAIAERG-NS 330
                 346899999*****99778899***99999998886.7888888887.33 PP

>> DUF3611  Protein of unknown function (DUF3611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.0   6.3e-06     0.028      20     131 ..     110     220 ..     106     231 .. 0.85
   2 ?    0.8   2.4     0.089     4e+02      29      68 ..     212     251 ..     186     259 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.3e-06
     DUF3611  20 WlQlvLgvvsalillfallgrslaeetnaglgfglflavlglvvllfsifwafrytrlarrLraenpelrpkkaevlqllklGlivnlvGmllallgae 118
                 W+ l+Lg++  l llf ++++++ + + a + + +++ ++ l+  ++ + + f + r+   L+ +n ++r   +++++ lk+  +  +v   + + g+ 
  CCD23722.1 110 WAALILGAIGELGLLFLSIFSTA-RYHDAHTAMVVVFCIFMLLSIICLTTQYFIMGRHYALLHPKNYQNRDYNTKTIHELKWWQWDGVVWNKFVISGYA 207
                 99***************999974.666777777777778888888888888888888888899999999999**********99999999999999999 PP

     DUF3611 119 atvgvLlakalsq 131
                  tv ++la ++++
  CCD23722.1 208 KTVWMVLAIVFAI 220
                 9999999988776 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.089
     DUF3611  29 salillfallgrslaeetnaglgfglflav.lglvvllfsi 68 
                  +l+++fa+ +  + ++ +++++f ++la+ +g++++++s+
  CCD23722.1 212 MVLAIVFAICFGAI-DNDSTSASFEWLLAFwFGVIFMIISV 251
                 45566667766654.46677788888888647999999997 PP

>> CitMHS  Citrate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.9    0.0006       2.7     113     224 ..     107     247 ..      15     258 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0006
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......... RF
      CitMHS 113 ppl.lliplalaaniggaltpiGtpttraa.arpglslpnllllalllvgllplvllfmfgvalalpvnapkvkkqkaiieaiarsllpv......... 200
                 +++ ++++l+ +  +g +++ i+   +r   a  ++++++ +++ l +++l + ++++  + al  p n+++ + ++++i  ++++ ++          
  CCD23722.1 107 NLIwAALILGAIGELGLLFLSIFST-ARYHdAHTAMVVVFCIFMLLSIICLTTQYFIMGRHYALLHPKNYQNRDYNTKTIHELKWWQWDGvvwnkfvis 204
                 3334556666667777766666555.333356666666667777777777899999999*************************977765566666666 PP

                 .........xxxxxxx..............xxxxxxxxxxxxxxxxx RF
      CitMHS 201 .........atillla..............ykkveWsvlllfaGvfl 224
                               ++                + eW + ++f+ +f+
  CCD23722.1 205 gyaktvwmvL----AIvfaicfgaidndstSASFEWLLAFWFGVIFM 247
                 5555532211....113445666667766666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1054  (0.0587874); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 2844.32
//
Query:       CCD23723.1  [L=685]
Description: hypothetical protein NDAI_0C00620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-05   24.4   0.0    3.5e-05   23.4   0.0    1.5  1  CUE       CUE domain


Domain annotation for each model (and alignments):
>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.9e-09   3.5e-05       3      42 .]      16      54 ..      14      54 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.9e-09
                HHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHCC CS
         CUE  3 qmletLkemFPdldeevIravLrasngnvEatinaLLegs 42
                +++etLke+FP+++ +++ +  r+ n ++E+ i+++  gs
  CCD23723.1 16 SKIETLKELFPNWSNDDLIDLVREFN-DLETIIDKITTGS 54
                789*******************8888.********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3235  (0.180434); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                       364  (0.0203023); expected 17.9 (0.001)
Passed Fwd filter:                       158  (0.00881254); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.45u 0.38s 00:00:02.83 Elapsed: 00:00:00.59
# Mc/sec: 3480.94
//
Query:       CCD23724.1  [L=102]
Description: hypothetical protein NDAI_0C00630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-27   95.1   3.7      3e-27   94.7   3.7    1.2  1  UPF0203    Uncharacterised protein family (UPF0203)
    0.00065   19.9   0.4     0.0013   18.9   0.4    1.4  1  UCR_hinge  Ubiquinol-cytochrome C reductase hinge protein
  ------ inclusion threshold ------
      0.022   14.7   2.4       0.27   11.3   1.0    2.2  2  Cmc1       Cytochrome c oxidase biogenesis protein Cmc1 like


Domain annotation for each model (and alignments):
>> UPF0203  Uncharacterised protein family (UPF0203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   3.7     5e-31     3e-27       1      68 [.       7      74 ..       7      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 5e-31
     UPF0203  1 sslspeCtelKeaYdeCFnkWfsekflkgkekeeeCeklwkkYreClkkalkekgleklleeareeap 68
                ss++peCtelK++Yd+CFn+W+sekflkgk+ e+eC+k+w +Y++C+++al ++g+++ l+ear+eap
  CCD23724.1  7 SSFAPECTELKTKYDDCFNEWYSEKFLKGKSVENECSKEWYAYSTCIDAALVKQGIKPALDEARKEAP 74
                699***************************************************************98 PP

>> UCR_hinge  Ubiquinol-cytochrome C reductase hinge protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.4   2.1e-07    0.0013      13      59 ..      10      59 ..       5      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.1e-07
   UCR_hinge 13 kekCkklkkhyeeCveRVksrse...aeteedCveelfdlvhcvdhCvap 59
                +++C++lk +y++C +   s++    ++ e +C +e + + +c+d+   +
  CCD23724.1 10 APECTELKTKYDDCFNEWYSEKFlkgKSVENECSKEWYAYSTCIDAALVK 59
                689***********8777776657777799***************87655 PP

>> Cmc1  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.0   4.5e-05      0.27      30      60 ..       8      43 ..       3      47 .. 0.76
   2 ?    4.3   0.2     0.007        42       9      26 ..      38      55 ..      33      60 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.5e-05
        Cmc1 30 kvvgkCneekeamkkClkeyrtderl.....kdaek 60
                +++++C e+k++ ++C  e++ ++ l     ++++ 
  CCD23724.1  8 SFAPECTELKTKYDDCFNEWYSEKFLkgksvENECS 43
                688999**********99999998885544444444 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.007
        Cmc1  9 arkeCaelikalaeChkd 26
                 ++eC+++  a+ +C  +
  CCD23724.1 38 VENECSKEWYAYSTCIDA 55
                568999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 819.21
//
Query:       CCD23725.1  [L=321]
Description: hypothetical protein NDAI_0C00640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-28   96.2   1.7    1.5e-27   95.2   1.7    1.6  1  DASH_Ask1  DASH complex subunit Ask1


Domain annotation for each model (and alignments):
>> DASH_Ask1  DASH complex subunit Ask1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   1.7   8.5e-32   1.5e-27       1      64 []       4      67 ..       4      67 .. 0.99

  Alignments for each domain:
  == domain 1  score: 95.2 bits;  conditional E-value: 8.5e-32
   DASH_Ask1  1 leqldqeitltLqeIDanlsrcfriitkkilPavkrYgeasekiwesakfwksffeqsAnveLs 64
                +e+ldqeitl+Lq+ID+nl +cf++it++i+P++++Y++ +++i++s+++++ +f+q+Anv+L+
  CCD23725.1  4 IEKLDQEITLNLQKIDSNLGYCFKKITQDIIPQIRNYSTICDQITDSTNWLNVMFQQTANVDLN 67
                79************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1218  (0.0679346); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2304.77
//
Query:       CCD23726.1  [L=360]
Description: hypothetical protein NDAI_0C00650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-87  293.8   0.1    1.5e-87  293.6   0.1    1.0  1  F_bP_aldolase  Fructose-bisphosphate aldolase class-II


Domain annotation for each model (and alignments):
>> F_bP_aldolase  Fructose-bisphosphate aldolase class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.6   0.1   8.4e-92   1.5e-87       3     279 ..      19     358 ..      17     359 .. 0.93

  Alignments for each domain:
  == domain 1  score: 293.6 bits;  conditional E-value: 8.4e-92
                    HHHHHHHHHHHT--EEEEE--SHHHHHHHHHHHHHHTS-EEEEE-HHHHHHHH-.............HHHHHHHHHHHHHHHHT...-EEEEEE-- CS
  F_bP_aldolase   3 lkellkkAkeegyavgafnvtnletvkavleaaeeaksPvIlqlsegaaakyag.............gaealaelvraaaeaykkasvpvalhlDH 85 
                    + +l+++Ake+++a++a+nvt+++tv a+leaa+++ksP+Ilq+s+g+aa++ag             g  a+a+++r++a ay+   +pv+lh DH
     CCD23726.1  19 VAALFAYAKEHKFAIPAINVTSSSTVVAALEAARDNKSPIILQTSNGGAAYFAGkgvsnegqnasikGSVAAAHYIRSIAPAYG---IPVVLHSDH 111
                    6789************************************************99***************************888...********* PP

                    --G.....HHHHHHHHHH........S-SEEEE--TTS-HHHHHHHHHHHHHHHHHTT-EEEEE-----------....TT-TTTS--HHHHHHHH CS
  F_bP_aldolase  86 gak.....leglkkaiea........gfsSvMiDgSelpleeNialtkevverahalgvsvEaElGriggeedgv....vaeeklyTdpeeaeefv 164
                    +ak     ++g+++a ea        +fsS+M+D+Se+  eeNi+++ ++++r++a+++++E+E+G++ggeedgv    +++e+lyT+pe++ ++ 
     CCD23726.1 112 CAKkllpwFDGMLEADEAyfkvhgepLFSSHMLDLSEETDEENISTCVKYFKRMAAMQQWLEMEIGITGGEEDGVnnesADKEDLYTKPEQVFAVH 207
                    ***********************9999************************************************666555555************ PP

                    HHHH....-EEEE--SS---SS--SS..--THHHHHHHHHH..........--S..EE-SGTTS-HHHHHHHHHTTEEEEEE-HHHHHHHHHHHHH CS
  F_bP_aldolase 165 eetg....vdalAvaiGnvHGvykpkpkLdferlkeiqkav..........vpl..VlHGgsgvpdeeirkaiklGvvKiNidtdlrlaytkavkk 244
                    +++      +++A a+GnvHGvy  + +L++e+l++ q+++          +pl  V+HGgsg++d ++++ i++GvvK+N+dtd+++ay++++++
     CCD23726.1 208 QALApissNFSIASAFGNVHGVYAGTMDLRPEILADQQAYAakqlgqpagsKPLnfVFHGGSGSTDAQFHTGIDNGVVKVNLDTDCQWAYLTGIRD 303
                    ***99999****************9999**************9*999999966555**************************************88 PP

                    G..............G.....E-HH.H-HHHHHHHHHHHHHHHHHHHHHHTT-SS CS
  F_bP_aldolase 245 e..............k.....enkk.ydprkllkeaeeamkevvkekiellgsag 279
                    +              +     +nkk +dpr++++e+e++m++++++++ ++++++
     CCD23726.1 304 YvlnkkdyimttvgnPtgpeaPNKKyFDPRVWVREGEKTMTARIAQALAIFRTQN 358
                    87776666666666505556699999*************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2804.18
//
Query:       CCD23727.1  [L=106]
Description: hypothetical protein NDAI_0C00660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-22   77.7   1.0      1e-21   77.6   1.0    1.1  1  BLI1      BLOC-1 interactor 1


Domain annotation for each model (and alignments):
>> BLI1  BLOC-1 interactor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   1.0   5.8e-26     1e-21       4      81 ..      13      90 ..      10     106 .] 0.92

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 5.8e-26
        BLI1  4 eervlkqdvercveklqefvdtelakaisvfskkteenekWleeikekyklkdedelkalkalkkkklkkleelekkv 81
                +++ l+ +ve cv+ lqe +dte+a++is f+ kt +n+ Wlee++++yklk++ +l+a+ +l  ++lk+l++le+k 
  CCD23727.1 13 KNKFLQTKVEACVNSLQELLDTEAARSISTFAGKTGSNKVWLEELSAEYKLKPDRKLDAIGELYAQQLKQLDDLEEKS 90
                67889**********************************************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 787.63
//
Query:       CCD23728.1  [L=517]
Description: hypothetical protein NDAI_0C00670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-69  233.9   1.2    3.8e-69  233.4   1.2    1.2  1  DUF2347   Uncharacterized conserved protein (DUF2347)
    1.5e-10   40.4   0.9    2.2e-09   36.5   0.9    2.6  1  Avl9      Transport protein Avl9
    3.3e-09   37.1   0.1    8.2e-09   35.8   0.0    1.7  2  DUF4484   Domain of unknown function (DUF4484)
    2.5e-08   33.8   0.0    6.4e-08   32.6   0.0    1.7  1  SPA       Stabilization of polarity axis


Domain annotation for each model (and alignments):
>> DUF2347  Uncharacterized conserved protein (DUF2347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.4   1.2   8.5e-73   3.8e-69       1     281 [.      36     333 ..      36     335 .. 0.89

  Alignments for each domain:
  == domain 1  score: 233.4 bits;  conditional E-value: 8.5e-73
     DUF2347   1 lflikFDvkkGytivwsksv.....pdvelegvEfksLPSGihevsedlvyfv............heeyyglsaFrqneveeeeer......nvkmysv 76 
                 +fl++FD++kG++ +ws+ +     +++ le++Efk+LPSG+h  sed++ f+            +e +yg++++ qn+ +  e +      +v+my+ 
  CCD23728.1  36 MFLCQFDMRKGNVKIWSQLNeqykdNELVLENIEFKTLPSGLHASSEDVITFTiprnslanedvrNEPFYGVAYYNQNSYDIMEGHseidrsKVRMYAF 134
                 8****************998777778899*******************************999999999***********988877889999******* PP

     DUF2347  77 Gvlvds.......snerlskawryaekLkellkkllese..dntsvLeeyfekekakkedeesssekksesrerslsdassleteeealssthllssLp 166
                 Gv+v++       +  +++ +++y+++L+++lk++l+ +   n++++ee+f+++++            +e++++ l+ + +++ + +   ++h++++Lp
  CCD23728.1 135 GVIVNPvekvkdnPFASITMVNKYIDNLEDTLKEWLNLNddLNFAIFEEFFTENST------------RENQSQILDSVVEENITINSSRRRHMVEYLP 221
                 ***********9999999*****************998865789*******33333............223334445555566666778899******* PP

     DUF2347 167 elldklGplifpLykaaLlrkrILll..ssapveelcslvYllslLssipksleellksessrlrplfnvgvaDipsLekekkesgyiActtdeiLalk 263
                  +++k+Gplif+++k +Ll krIL+l  s  ++e+++sl++ +slLs+ ++++++ +k     + plf+vg++Di+sL+  + + +yiAct+deiLa k
  CCD23728.1 222 FWFRKFGPLIFTIWKECLLDKRILILngSGESLETCNSLCFYMSLLSMKTNEISTDQK----FITPLFTVGTTDIDSLKRLS-HYSYIACTNDEILADK 315
                 **************************9877789***************9998887665....99****************99.56************** PP

     DUF2347 264 keLyDvlvklppksskna 281
                 +eLyD+l+ lp++ ++++
  CCD23728.1 316 QELYDILIRLPSHTMESE 333
                 ***********9988776 PP

>> Avl9  Transport protein Avl9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.9     5e-13   2.2e-09       4     263 ..      36     343 ..      33     346 .. 0.63

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 5e-13
        Avl9   4 ilvvgFhHkkGpevefsyppeeeekeekesewklLpflalpDGsHnfeedfvyFtleede..seteeektlfgiscvrQikaeelkartadvtRstvQK 100
                 + +  F   kG +v+ + +  +e+ +++e   +++ f +lp G H+++ed   Ft+++++  +e  +++ ++g++++ Q  + ++++ ++++ Rs v  
  CCD23728.1  36 MFLCQFDMRKG-NVKIWSQ-LNEQYKDNELVLENIEFKTLPSGLHASSEDVITFTIPRNSlaNEDVRNEPFYGVAYYNQN-SYDIMEGHSEIDRSKVRM 131
                 55667777777.5888888.677777788889*************************8875445556789*********5.67889999********86 PP

        Avl9 101 ...svvv.....lsklpifgkik......ekLslitkayfeqkdfsnteilkelyeqlnae.lkskekeel........eesklfvglslrelvlkfrh 176
                     v+v     + ++  f +i       ++L+   k +++ +d  n  i +e++++ ++  ++s+  +++        ++++ ++   l     kf  
  CCD23728.1 132 yafGVIVnpvekVKDN-PFASITmvnkyiDNLEDTLKEWLNLNDDLNFAIFEEFFTENSTReNQSQILDSVveenitinSSRRRHMVEYLPFWFRKFGP 229
                 3222333232222222.3433321112226777777888888888899999999876544325555555554333333322223333344444567788 PP

        Avl9 177 kvLvlfKlllLekkvlvygspve..klcelilsliSLipelieklqdsasplleslesdlelkkpeslkesdrks........................ 249
                  + +++K +lL+k++l+   + e  ++c+ ++  +SL++   ++++   + ++  ++    +++++slk  ++ s                        
  CCD23728.1 230 LIFTIWKECLLDKRILILNGSGEslETCNSLCFYMSLLSMKTNEISTDQKFITPLFTVG--TTDIDSLKRLSHYSyiactndeiladkqelydilirlp 326
                 8999*************985444115677776666666666665554443333333333..34444444433333444555666777777777777777 PP

        Avl9 250 ...vleqlglPlqiFek 263
                    ++++  +P++iF++
  CCD23728.1 327 shtMESEEEAPVKIFTN 343
                 77788888888888876 PP

>> DUF4484  Domain of unknown function (DUF4484)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.6   7.2e+03       2      19 ..     383     400 ..     382     403 .. 0.70
   2 !   35.8   0.0   1.8e-12   8.2e-09     150     198 ..     460     508 ..     416     511 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.6
     DUF4484   2 EplsWaalaYsgFiWwAS 19 
                 Ep+sW+++  ++    A 
  CCD23728.1 383 EPVSWSQFFIDSAYCIAT 400
                 9*****986666555555 PP

  == domain 2  score: 35.8 bits;  conditional E-value: 1.8e-12
     DUF4484 150 aeeeeeedevvridsedlaemGLDvwsaaDaaFveelvalyfgRkakve 198
                 ++e+ ++d+ ++i+s++l ++ LD +s++D++Fve++ +lyf+Rk  ++
  CCD23728.1 460 ENESLDSDGPIHISSHSLLKLNLDCFSSQDKQFVEQFCQLYFNRKIAID 508
                 23357899*************************************9886 PP

>> SPA  Stabilization of polarity axis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.4e-11   6.4e-08       9     111 ..     225     331 ..     220     334 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 1.4e-11
         SPA   9 ekftpeiillinalltskriivlstkasadevsefvLalsnlispagdvlrgfknnsfPyvdlse..ldalekvpg..yIvGvtNPiFeeqeqlWDvly 103
                 +kf+p i +++++ l++kri++l  + ++ e ++    +++l s++++  ++ ++ + P  ++    +d+l+      yI+ +   i +++++l+D+l+
  CCD23728.1 225 RKFGPLIFTIWKECLLDKRILILNGSGESLETCNSLCFYMSLLSMKTNEISTDQKFITPLFTVGTtdIDSLKRLSHysYIACTNDEILADKQELYDILI 323
                 79******************9987777776667766666666666455444434445787555444488888877666********************* PP

         SPA 104 dldsgsvk 111
                 +l s+++ 
  CCD23728.1 324 RLPSHTME 331
                 **998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3639.52
//
Query:       CCD23729.1  [L=452]
Description: hypothetical protein NDAI_0C00680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.3e-160  534.9  22.0   1.5e-160  534.7  22.0    1.0  1  Glyco_hydro_76  Glycosyl hydrolase family 76


Domain annotation for each model (and alignments):
>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  534.7  22.0  8.6e-165  1.5e-160       1     365 [.      34     398 ..      34     399 .. 0.99

  Alignments for each domain:
  == domain 1  score: 534.7 bits;  conditional E-value: 8.6e-165
                     SXHHHHHHHHHHHHHHCETTECCTCTCBSCES-GHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHCCCTCEE-SSSTTCTCSSEHHHHHHHHHH CS
  Glyco_hydro_76   1 siksaaatiakgllkyYkgnesggtpgnlpdpyywWeagalfgalidywrltgdstyndlitqallaqagenydympanqsrtegnDDqafwgla 95 
                     s+++a++ +a+gl++yY+gn++g+t+g+++dpyywWeag ++g+++dyw++++++tynd i  all+q+g+n+dy+p nqs+tegnDDqafwg+a
      CCD23729.1  34 SLRNATSLVAYGLMDYYTGNQYGKTIGMFSDPYYWWEAGGAWGSMLDYWYYMDNDTYNDEIMAALLHQTGDNNDYVPLNQSTTEGNDDQAFWGIA 128
                     6789******************************************************************************************* PP

                     HHHHHHH......H--HHHHHHHHHHHHHHHHCB-SCSCCS-BBSEC..ESS--SEEEHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHH CS
  Glyco_hydro_76  96 amtaaernfpep.tdepswLalAqavfntqasrwdeetcgGGlrWqiftwnsgydyknsisngplfqlaarLarytgnetYlewAekvwdWvedv 189
                     +mtaaernf++p +d+p+wL lAqavfnt+a rwd +tcgGGlrWqif wnsgydykn++sng+lf++aarLarytgn++Y++wAekv+dW+++v
      CCD23729.1 129 VMTAAERNFTNPpEDSPQWLYLAQAVFNTMALRWDGDTCGGGLRWQIFVWNSGYDYKNTVSNGALFHMAARLARYTGNQSYVDWAEKVYDWMYEV 223
                     *********************************************************************************************** PP

                     SCS.BTTTS-B-SEEETTTCCEEEE---HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCEECTTEEEEEE-TTSTTCCTTHHHHHHH CS
  Glyco_hydro_76 190 gli.ddedwlvyDgasvednctdinklqwtYnqGtylsgaaylynaTgdekWldrvkgllnatlstffpdgnilyevacepsekcnnDqrsFkgi 283
                     gl+ + +++ vyDg+++ +nc++i+++qwtYn+G++++gaaylyn+T++e+W++r+k l++a+  +ff++ +i+ye+ac+++++cn+DqrsFk++
      CCD23729.1 224 GLVsNGSSMFVYDGVNIANNCSTITPYQWTYNHGLVMAGAAYLYNFTENEVWHNRTKMLVDAS-TVFFNN-SIMYEAACQGPNSCNTDQRSFKAY 316
                     ***999********************************************************9.888888.9*********99************ PP

                     HHHHHHHHH..SHHHHHHHHHHHHHHHHHHHTTTB...TTTSB-TTTTTSSCCHHHHHHHHCCHHH............HHHH CS
  Glyco_hydro_76 284 larwlaltaqlapetadtiepllrasaeaaakscsggsdgttcglkwlkgtwdgdaglgeqmsaleviqallveekkaplta 365
                     ++r+l++taql+pet+++i pl++asa aa kscsgg+dg+tcgl+w+ g+wdg +glgeqm+alev+ ++ + +k+ap+t+
      CCD23729.1 317 FSRFLGATAQLVPETRSKILPLINASAIAAGKSCSGGTDGHTCGLNWFIGDWDGMYGLGEQMCALEVMVNTRCLHKPAPYTS 398
                     ***************************************************************************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3264.71
//
Query:       CCD23730.1  [L=650]
Description: hypothetical protein NDAI_0C00690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0015   18.9   2.9     0.0015   18.9   2.9    3.8  3  zf-C2H2       Zinc finger, C2H2 type
  ------ inclusion threshold ------
      0.014   16.2  15.9      0.061   14.2   1.4    4.2  4  zf-C2H2_4     C2H2-type zinc finger
      0.034   13.9   0.8          5    7.0   0.0    2.6  2  zf-C2H2_11    zinc-finger C2H2-type
      0.052   13.2   0.1       0.14   11.8   0.1    1.7  1  UL45          UL45 protein, carbohydrate-binding C-type lecti
      0.064   13.7   1.1      0.064   13.7   1.1    3.6  3  zf-H2C2_2     Zinc-finger double domain
       0.33   10.9   0.1       0.33   10.9   0.1    2.6  3  PyrI_C        Aspartate carbamoyltransferase regulatory chain
       0.54   10.7   4.8        5.3    7.6   0.1    3.3  3  zf-C2HE       C2HE / C2H2 / C2HC zinc-binding finger
        1.7    8.7  17.1       0.86    9.6   4.3    3.1  2  Apis_Csd      Complementary sex determiner protein


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   2.9   6.6e-07    0.0015       1      23 []     273     295 ..     273     295 .. 0.98
   2 ?    2.5   0.4      0.11   2.4e+02      10      23 .]     322     336 ..     316     336 .. 0.92
   3 ?    1.5   0.7      0.22     5e+02       3      12 ..     355     364 ..     354     366 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 6.6e-07
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++C++C+ +F+ +  L+rHi++H
  CCD23730.1 273 FVCHYCDAKFRIRGYLTRHIKKH 295
                 89********************9 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.11
                 ESSHHHHHHHHHC.C CS
     zf-C2H2  10 FkrksnLkrHirt.H 23 
                 F+r++ +k+H++  H
  CCD23730.1 322 FSRRDTYKTHLKArH 336
                 9**********9877 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.22
                 ETTTTEEESS CS
     zf-C2H2   3 CpdCgksFkr 12 
                 C+ Cg+ F++
  CCD23730.1 355 CSQCGEFFNS 364
                 ********87 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.4   2.7e-05     0.061       1      23 [.     273     295 ..     273     296 .. 0.91
   2 ?   -3.5   0.1         8   1.8e+04       5      15 ..     302     310 ..     301     311 .. 0.63
   3 ?    4.5   0.3     0.035        77       7      24 .]     319     336 ..     312     336 .. 0.87
   4 ?    6.3   0.3    0.0093        21       3      21 ..     355     374 ..     354     375 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.7e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f C++C++ F+ +  L rH+k+h
  CCD23730.1 273 FVCHYCDAKFRIRGYLTRHIKKH 295
                 89********888889******9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 8
   zf-C2H2_4   5 iCgksFsskka 15 
                 +C  +F +++a
  CCD23730.1 302 HC--PFFNNDA 310
                 67..7776665 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.035
   zf-C2H2_4   7 gksFsskkaLlrHlkthH 24 
                 ++ Fs+++++++Hlk+ H
  CCD23730.1 319 SGGFSRRDTYKTHLKARH 336
                 678************998 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0093
   zf-C2H2_4   3 CpiCgksFsskkaL.lrHlk 21 
                 C++Cg+ F+s + + ++Hl+
  CCD23730.1 355 CSQCGEFFNSTDIWiSKHLE 374
                 ******99877775388986 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0022         5       2      24 ..     270     292 ..     269     293 .. 0.92
   2 ?    4.9   0.2    0.0099        22       1      23 [.     349     372 ..     349     374 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0022
  zf-C2H2_11   2 estcqCleCGlcftSqlsLsRHl 24 
                 e t+ C  C  +f + + L RH 
  CCD23730.1 270 EGTFVCHYCDAKFRIRGYLTRHI 292
                 67999*****************6 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0099
  zf-C2H2_11   1 destcqCleCGlcftS.qlsLsRH 23 
                 ++s+  C +CG  f S ++  s+H
  CCD23730.1 349 NKSSGHCSQCGEFFNStDIWISKH 372
                 78999******9997724666666 PP

>> UL45  UL45 protein, carbohydrate-binding C-type lectin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.2e-05      0.14      89     180 ..     185     277 ..     182     286 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.2e-05
        UL45  89 wiglgdsCvravgkpa.dtyeeaka.vCralseklissskakllltlldvlastsassseqkvnddslascltpkesvalvedcsetalviCya 180
                 +++++++  ++ ++p+ ++++ +++ +  + +  ++++ k k+ + ++  + s s+ss ++  n ++   ++t++ s +lved++e+ + +C++
  CCD23730.1 185 TFNINNKQTQVPPRPPqQQQQHVVQpISPESNDSPANNKKNKTAA-AATLVHSPSSSSDKNINNSTENGHLSTSTSSSPLVEDTEEEGTFVCHY 277
                 666666666666666643333333314456667777777766655.45555566777777788999999***********************98 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.066   1.5e+02      14      24 ..     272     282 ..     253     283 .. 0.84
   2 ?   13.7   1.1   2.9e-05     0.064       2      19 ..     288     305 ..     287     305 .. 0.95
   3 ?    1.4   0.7      0.22     5e+02      11      25 ..     342     363 ..     328     364 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.066
   zf-H2C2_2  14 pyeCplCdkaF 24 
                  + C +Cd +F
  CCD23730.1 272 TFVCHYCDAKF 282
                 589*****999 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.9e-05
   zf-H2C2_2   2 LrrHirkHtgekpyeCpl 19 
                 L+rHi+kH  ek y+Cp+
  CCD23730.1 288 LTRHIKKHAIEKAYHCPF 305
                 99***************7 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.22
   zf-H2C2_2  11 gekpy.......eCplCdkaFk 25 
                 g kp        +C+ C+  F+
  CCD23730.1 342 GVKPQdrnkssgHCSQCGEFFN 363
                 5555455666668*****9997 PP

>> PyrI_C  Aspartate carbamoyltransferase regulatory chain, metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00015      0.33      27      44 ..     266     283 ..     257     285 .. 0.83
   2 ?   -1.3   0.0      0.92   2.1e+03      28      48 .]     347     367 ..     335     367 .. 0.83
   3 ?   -4.3   0.6         8   1.8e+04      10      22 ..     603     615 ..     602     619 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
                 EETTTTEEEETTT--EEE CS
      PyrI_C  27 edkekvklkCkYCekeis 44 
                   +e++++ C+YC+ +++
  CCD23730.1 266 DTEEEGTFVCHYCDAKFR 283
                 45899*********9985 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.92
                 ETTTTEEEETTT--EEEHHHH CS
      PyrI_C  28 dkekvklkCkYCekeiseeei 48 
                 d++k   +C  C++ ++  +i
  CCD23730.1 347 DRNKSSGHCSQCGEFFNSTDI 367
                 67778889******9998876 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 8
                 -TTBGGGTTS-.- CS
      PyrI_C  10 NpnCItnnepves 22 
                 N+n It++ +v++
  CCD23730.1 603 NTNNITQHPNVDK 615
                 8888998877765 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0024       5.3      32      61 ..     267     295 ..     232     298 .. 0.69
   2 ?   -3.2   0.0       5.6   1.3e+04      38      48 ..     314     323 ..     312     338 .. 0.58
   3 ?    3.0   0.9     0.064   1.4e+02      35      50 ..     350     364 ..     324     366 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0024
     zf-C2HE  32 lilktpLkCtrCganfgnkfpkLKeHLeee 61 
                    ++ + C++C+   ++    L +H++++
  CCD23730.1 267 TEEEGTFVCHYCD-AKFRIRGYLTRHIKKH 295
                 446789*******.5556667777777776 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.6
     zf-C2HE  38 LkCtrCganfg 48 
                 L+C+  g  f 
  CCD23730.1 314 LRCHNSG-GFS 323
                 6777766.443 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.064
     zf-C2HE  35 ktpLkCtrCganfgnk 50 
                 k++ +C +Cg +f+n+
  CCD23730.1 350 KSSGHCSQCG-EFFNS 364
                 66779*****.88885 PP

>> Apis_Csd  Complementary sex determiner protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   4.9     0.034        76      27      73 ..      72     117 ..      55     131 .. 0.63
   2 ?    9.6   4.3   0.00039      0.86      26      79 ..     468     523 ..     449     538 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.034
    Apis_Csd  27 retsrersrdrkerersrekkiisslsnlsnnynynnnynnynnynk 73 
                 r+ ++ +s + +er+ s+  +  ++ ++  n+ + +nn nn nn n 
  CCD23730.1  72 RNVTQGKSEELEERQYSKTDNTSTNRDSDNNDDD-DNNSNNSNNSND 117
                 6667777888888888887766555444444433.444444443333 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00039
    Apis_Csd  26 yretsrersrdrkerersrekkiisslsnlsnnynynnnynnyn..nynklyynin 79 
                  r+t r   + ++++   + ++iiss s+++nn+n  n++ + +   yn l++n  
  CCD23730.1 468 KRKTNRTAKKIQQNKSLPNHTNIISSHSTNQNNNNNVNTHTHTKngGYNPLFFNGT 523
                 4566666666666677778899****999999888777665544358999988743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1896  (0.10575); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 4525.44
//
Query:       CCD23731.1  [L=458]
Description: hypothetical protein NDAI_0C00700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-07   31.6   0.0    2.7e-07   30.5   0.0    1.5  1  PGAP1          PGAP1-like protein
    3.1e-07   30.1   0.1    7.5e-07   28.9   0.0    1.6  2  DUF676         Putative serine esterase (DUF676)
    6.5e-06   26.2   0.0    5.4e-05   23.1   0.0    2.2  1  Palm_thioest   Palmitoyl protein thioesterase
    3.5e-05   23.3   0.1    0.00084   18.7   0.0    2.7  3  DUF915         Alpha/beta hydrolase of unknown function (DUF9
      4e-05   23.4   0.0    0.00036   20.3   0.0    2.1  2  Abhydrolase_1  alpha/beta hydrolase fold
     0.0063   15.7   0.5     0.0091   15.2   0.0    1.6  2  LCAT           Lecithin:cholesterol acyltransferase


Domain annotation for each model (and alignments):
>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   9.1e-11   2.7e-07      70     165 ..     230     325 ..     219     343 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 9.1e-11
       PGAP1  70 eylndaIkyIlsly.sssekeptsviliGHSmGGivaraaltlknyikqsvntiltlasPhalpplsfdkdilklyervnefwkkeleekek.lenvl 165
                 e+l+  Ik+ l+   +++++ + ++ li+HSmGG+  r ++     ++ +v ++ t+++Ph+ + +  d ++++l+e+++++++  ++++++   ++l
  CCD23731.1 230 EFLESEIKRKLNSKgKDNSNGKVKLNLIAHSMGGLDCRYLISKIPKKNYQVVSLTTISTPHHGSEM-AD-YVVNLFEKLKTVPSFGTNDSTTsSTQIL 325
                 788888887555545888999999***************99988889999***************9.45.9************999998866444555 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.1   6.3e+03       8      16 ..     121     129 ..     121     159 .. 0.76
   2 !   28.9   0.0   2.5e-10   7.5e-07      77     152 ..     242     311 ..     213     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.1
      DUF676   8 vVlvHGlqg 16 
                 vVl HGl g
  CCD23731.1 121 VVLCHGLSG 129
                 799999987 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 2.5e-10
      DUF676  77 k........nkkiSfvghSlGgliaraaiaklkekemtlkeaikglepvtfitlasPhLGvlysskslinlglalleklkksls 152
                 +        + k+ +++hS+Ggl  r+ i k+ +k++         ++v ++t+++Ph G+ +   +     ++l+eklk++ s
  CCD23731.1 242 SkgkdnsngKVKLNLIAHSMGGLDCRYLISKIPKKNY---------QVVSLTTISTPHHGSEMADYV-----VNLFEKLKTVPS 311
                 22333455589**********************7753.........5899***********999988.....888888887655 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.8e-08   5.4e-05       1     109 [.     120     302 ..     120     365 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.8e-08
  Palm_thioest   1 PvviwhGldsaesn.....mqklaeliekli.gtyvknveigeseaedrkasffgnlndqvea.................................. 57 
                   Pvv+ hGl  ++       + +l++li ++i + +  n  i++++ +   ++ +gn+ + +++                                  
    CCD23731.1 120 PVVLCHGLSGFDRLvlipsIYSLTKLIMNSInSDKSDNFLIDDRDDDSDGKTTVGNVSERAKDdkkiahrlgeveywigikeileekgcsvlttrvp 216
                   7888888855555577777777777777777446777777777777777888888888888878888888888888887777777777776666666 PP

  Palm_thioest  58 ..............vckk...............lelangfhaiGfSQGglflRaliercddkkn.vrnlislggpqaGvfg......l 109
                                 +                  ++ + + ++i++S Ggl +R li ++++k+  v +l ++++p+ G         l
    CCD23731.1 217 sfgsieeralalheF--LeseikrklnskgkdnSNGKVKLNLIAHSMGGLDCRYLISKIPKKNYqVVSLTTISTPHHGSEMadyvvnL 302
                   666555555544441..0445555677778888888999********************777669*************8764443330 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.69   2.1e+03       6      23 ..     113     130 ..     109     156 .. 0.78
   2 !   18.7   0.0   2.8e-07   0.00084     104     167 ..     253     314 ..     250     326 .. 0.88
   3 ?    0.8   0.0     0.086   2.6e+02     193     214 ..     376     397 ..     368     403 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.69
      DUF915   6 sekkkeiPtifihGyggt 23 
                 ++k  ++P+++ hG +g 
  CCD23731.1 113 DYKPPKYPVVLCHGLSGF 130
                 567778899999998875 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 2.8e-07
      DUF915 104 kfnavGhSmGglaltsYleeyaddkslPqlkklvtiggpfngienndedetlaqvkkdgpkkkt 167
                 k+n++ hSmGgl++ +Yl++   +k++ q+ +l ti +p  g+e+ d+ ++l++  k+ p+  t
  CCD23731.1 253 KLNLIAHSMGGLDC-RYLISKIPKKNY-QVVSLTTISTPHHGSEMADYVVNLFEKLKTVPSFGT 314
                 78**********96.79999999999*.***********************9998888776555 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.086
      DUF915 193 dledgkqsDgivplasseslky 214
                 d ++g   Dg+v+++ss+ ++y
  CCD23731.1 376 DASNGARNDGMVTVDSSKWGQY 397
                 67899************98876 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.089   2.7e+02       2      12 ..     120     138 ..     119     163 .. 0.70
   2 !   20.3   0.0   1.2e-07   0.00036      69     127 ..     248     306 ..     190     403 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.089
                    EEEEE-STTT........C CS
  Abhydrolase_1   2 vlvilhGlpg........s 12 
                    ++v++hGl g        s
     CCD23731.1 120 PVVLCHGLSGfdrlvlipS 138
                    9*******99655544443 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 1.2e-07
                    HCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHHHHHHHCH CS
  Abhydrolase_1  69 algddkltlvGhSmGGmialayaaeyperVkalvllgaidpaaslieaqrqqaksfpdf 127
                    + g  kl+l++hSmGG+ ++++ ++ p++   +v+l +i+++++ +e +++ ++ f + 
     CCD23731.1 248 SNGKVKLNLIAHSMGGLDCRYLISKIPKKNYQVVSLTTISTPHHGSEMADYVVNLFEKL 306
                    56889**********************************************99999876 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       1.4   4.1e+03     219     258 ..      25      62 ..      14     106 .. 0.55
   2 !   15.2   0.0     3e-06    0.0091     117     167 ..     248     295 ..     229     419 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.4
        LCAT 219 eiliqt.psinltegalvrffsdevdlkdllsftlnvlagw 258
                 +i+i++ ++++ ++++ +r  ++   ++d+l ft  ++ + 
  CCD23731.1  25 HIYINNdQKKHRSNTDTIRRKEE---QTDILTFTNLIEINT 62 
                 44443303334455555555444...444444444333333 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 3e-06
        LCAT 117 klsgkkvvliaHSmGnllvlyflkwveaeaWvdqhikafislgapllGsvk 167
                  +++ k  liaHSmG+l ++y + ++ ++     ++ +   +++p  Gs  
  CCD23731.1 248 SNGKVKLNLIAHSMGGLDCRYLISKIPKKN---YQVVSLTTISTPHHGSEM 295
                 344556789**************9976655...99999*********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3367.32
//
Query:       CCD23732.1  [L=296]
Description: hypothetical protein NDAI_0C00710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-29  102.5   0.4    5.6e-21   74.9   0.2    2.8  2  adh_short     short chain dehydrogenase
    1.8e-16   60.4   0.4    1.1e-12   48.0   0.1    2.9  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    0.00054   19.5   0.0      0.014   14.9   0.0    2.3  2  Epimerase     NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.014   15.3   0.5       0.22   11.4   0.5    2.3  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     3e-09   1.4e-05       2      37 ..       7      42 ..       6      79 .. 0.84
   2 !   74.9   0.2   1.2e-24   5.6e-21      77     191 ..     130     262 ..     106     266 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 3e-09
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekl 37
                +++vtGa++GIG+ai+k+l ++G++++ +++s e +
  CCD23732.1  7 IAIVTGATRGIGKAIVKKLSQQGVSCLGIGSSMESI 42
                79************************9998887766 PP

  == domain 2  score: 74.9 bits;  conditional E-value: 1.2e-24
                 SESEEEE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHH...............HCTTEEEEEEEEGGG..TSB-TTBHHHHHHHHHHHH CS
   adh_short  77 kldvLvnNAGitgsgpfselseeewervievNltgvflltravlpaml...............kqssGrIvnvsSvag..kvpvagvaaYsAsKaavag 158
                  +++Lvn+AGit+++   ++s e + ++++vN+ + + l+ + l++m+               +  s  I+n+sS+ g     ++g++ YsAsKaa+++
  CCD23732.1 130 YVNLLVNCAGITQDSVSIRTSTEMILKILNVNFASCVTLSNLTLKKMIkwqnmikreqltppkDVPSPCIINISSILGqgDITLPGTSIYSASKAALIQ 228
                 799********************************************9999999999888887788999******998446889*************** PP

                 HHHHHHHHHGGGTEEEEEEEESSBS.SHHHHHHC CS
   adh_short 159 ltrslakelaptgirvnavaPGlvd.Tdmakelr 191
                 +t++la+e +++gir ++++PGl+  Tdm ++l 
  CCD23732.1 229 YTKTLAQETETWGIRTQSMTPGLIPnTDMIQDLD 262
                 ************************99***98875 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00029       1.3       1      21 [.      12      32 ..      12      69 .. 0.91
   2 !   48.0   0.1   2.5e-16   1.1e-12      70     190 ..     131     266 ..     125     287 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00029
                  TTTTSHHHHHHHHHHHTT-EE CS
  adh_short_C2  1 GaasgIGraiAkalaeeGaev 21
                  Ga +gIG+ai+k+l ++G + 
    CCD23732.1 12 GATRGIGKAIVKKLSQQGVSC 32
                  999***************875 PP

  == domain 2  score: 48.0 bits;  conditional E-value: 2.5e-16
                   EEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHH.HCTSC.................CEEEEEEEG..GGTSBSTTTTHHHHHHH CS
  adh_short_C2  70 lDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalp.lmkeg.................gsivnlssv..gaervvpnynaygaaKa 146
                   ++ lvn+agi+++  +  + ts e + ++l+vn+ s++ l++  l+ ++k +                   i+n+ss+  ++ +++p++++y+a+Ka
    CCD23732.1 131 VNLLVNCAGITQD--SVSIRTSTEMILKILNVNFASCVTLSNLTLKkMIK-WqnmikreqltppkdvpsPCIINISSIlgQGDITLPGTSIYSASKA 224
                   6789*********..88899********************9999985333.22455555799988887777*******44455789*********** PP

                   HHHHHHHHHHHHHGGGTEEEEEEEE--B.HCTGGGGSTTHHHHHH CS
  adh_short_C2 147 alealtrylAvelgpkgiRvNavspgpi.kTlaasgikgfdelle 190
                   al++ t++lA e    giR  +  pg+i +T++ ++++   ++ +
    CCD23732.1 225 ALIQYTKTLAQETETWGIRTQSMTPGLIpNTDMIQDLD---QVTR 266
                   ****************************4456655554...3333 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.1e-06     0.014       2      56 ..       9      73 ..       8     131 .. 0.77
   2 ?    2.5   0.0     0.019        84     137     161 ..     214     238 ..     194     249 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.1e-06
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..........EEEE--TT-HHHH CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl..........elveldltdrsal 56
                +VtGat  iG+a+vk+l ++g+ ++g+ +  ++      +d           + + +dlt+  ++
  CCD23732.1  9 IVTGATRGIGKAIVKKLSQQGVSCLGIGSSMESISGITTNDHlhftepnqihRSMAIDLTNWPQW 73
                8*************************999866655544444346666665555556666665555 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.019
                 --SSHHHHHHHHHHHHHHHHHHHHT CS
   Epimerase 137 kpnspYaaaKlageklveayaaqyg 161
                 + +s Y+a+K+a  ++++ +a++ +
  CCD23732.1 214 PGTSIYSASKAALIQYTKTLAQETE 238
                 56899*************9998865 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   4.8e-05      0.22       4      36 ..       9      72 ..       7     183 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.8e-05
                EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS................................. CS
          KR  4 litGGlGgLGlelarwlaekgarhlvllsRsa...............................a 36
                ++tG++ g+G+++++ l ++g + l + s  +                               +
  CCD23732.1  9 IVTGATRGIGKAIVKKLSQQGVSCLGIGSSMEsisgittndhlhftepnqihrsmaidltnwpQ 72
                89*********************99988877656666666666666666666666665555551 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2328.32
//
Query:       CCD23733.1  [L=167]
Description: hypothetical protein NDAI_0C00720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-72  243.8   1.4    1.2e-72  243.6   1.4    1.0  1  TCTP      Translationally controlled tumour protein


Domain annotation for each model (and alignments):
>> TCTP  Translationally controlled tumour protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.6   1.4   6.9e-77   1.2e-72       1     165 [.       1     162 [.       1     163 [. 0.99

  Alignments for each domain:
  == domain 1  score: 243.6 bits;  conditional E-value: 6.9e-77
                 -EEEEETTTTTTSEECTT-EEEE.TTTEEEEE--EEEEETTBST.TSSS--SSSSSSS.SCCCECCEEHHHHCCTEEEECCHHHHHHHHHHHHHHHHHH CS
        TCTP   1 MiiYkdiitgdElfSDsykikevkdgvvyevegkmvtkkegnvdliganasaeegeeegvddevekvndivdnfrLqetsfdkksykaylkdYmkkvkk 99 
                 MiiYkdi+++dEl+SD+y+ikev dgv+ye+++ m++ +++n+d igan+sae+g+++ v+d++e vn++v++frLq t fdkks+++y+k+Ymk+vk+
  CCD23733.1   1 MIIYKDIFSNDELLSDAYDIKEV-DGVIYEADCAMIKVGGDNID-IGANPSAEDGDDD-VEDGAEVVNNVVNSFRLQPTGFDKKSFLTYIKGYMKAVKA 96 
                 9**********************.********************.9*******99988.6*************************************** PP

                 HHHHCSCCHHHHHHHHHHHHHHHHCTCCTTCEEEEECCCCTTS-EEEEEEECCCCEEEEEEECCCE CS
        TCTP 100 kleekkpeevkeFkkgaqeavkkilanfkdyqfytgesmdpdgmvvlldyredgvtPyfvffkdGL 165
                 kl+e++p++v++F+kgaq++vkk++++fkd++f+tgesmdpd+m+v+l+yredg+tP++ ++k+G+
  CCD23733.1  97 KLQESNPDAVSTFEKGAQTYVKKVIGSFKDWEFFTGESMDPDAMIVMLNYREDGTTPFVAIWKHGI 162
                 *****************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1409.43
//
Query:       CCD23734.1  [L=122]
Description: hypothetical protein NDAI_0C00730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-22   79.1   0.2    2.3e-22   78.7   0.2    1.2  1  TFIIA_gamma_N    Transcription initiation factor IIA, gamma s
    8.7e-22   77.0   7.2    1.9e-21   75.9   7.2    1.6  1  TFIIA_gamma_C    Transcription initiation factor IIA, gamma s
  ------ inclusion threshold ------
       0.15   12.0   0.0       0.18   11.7   0.0    1.1  1  Transketolase_C  Transketolase, C-terminal domain


Domain annotation for each model (and alignments):
>> TFIIA_gamma_N  Transcription initiation factor IIA, gamma subunit, helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.2   3.9e-26   2.3e-22       1      48 []       6      53 ..       6      53 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 3.9e-26
  TFIIA_gamma_N  1 yYelYRrstlGtaLtdaLDeliqegkIspqlamkVLeqFDksineaLa 48
                   yYelYRrst+G++L daLD li++g+I+ +lam+VLe+FDk+i+e+L+
     CCD23734.1  6 YYELYRRSTVGNSLVDALDTLISDGRIEASLAMRVLETFDKVISETLK 53
                   8*********************************************95 PP

>> TFIIA_gamma_C  Transcription initiation factor IIA, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   7.2   3.2e-25   1.9e-21       1      45 []      61     118 ..      61     118 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 3.2e-25
  TFIIA_gamma_C   1 tfKgkLdtYrfcDdVWtFiiknvefklen.............detvkvdkvKIVACns 45 
                    t+Kg+LdtY+fcDdVWtFi+kn+++++e+             ++ ++vdk++IVACns
     CCD23734.1  61 TVKGNLDTYGFCDDVWTFIVKNCKVTVEGnsqingdsnnsddQNIINVDKLRIVACNS 118
                    79***************************************77777***********8 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.9e-05      0.18      41      89 ..      36      84 ..      13      93 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.9e-05
                     EE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHHCCC CS
  Transketolase_C 41 vdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalaeeaf 89
                     + +r ++ +Dk   + ++ +t+  ++v+ +  + G+ ++v +++ +++ 
       CCD23734.1 36 LAMRVLETFDKVISETLKDNTQAKLTVKGNLDTYGFCDDVWTFIVKNCK 84
                     459*******99999******************************9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 942.73
//
Query:       CCD23735.1  [L=462]
Description: hypothetical protein NDAI_0C00740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-32  109.1   2.7    1.7e-31  108.3   0.2    2.3  2  DWNN           DWNN domain
      1e-07   31.6   7.5    1.4e-07   31.2   5.3    2.1  2  zf-CCHC_2      Zinc knuckle
    1.8e-06   28.1   0.0    5.4e-06   26.5   0.0    1.9  1  U-box          U-box domain
    0.00065   19.5   0.7     0.0018   18.1   0.7    1.7  1  zf-Nse         Zinc-finger of the MIZ type in Nse subunit
     0.0014   18.3   1.8      0.012   15.4   0.2    2.6  2  zf-CCHC_5      GAG-polyprotein viral zinc-finger
     0.0016   18.4   2.2     0.0016   18.4   2.2    2.3  2  zf-CCHC        Zinc knuckle
  ------ inclusion threshold ------
      0.033   14.1   1.1       0.09   12.8   1.1    1.8  1  DUF1610        Domain of unknown function (DUF1610)
      0.034   14.2   4.7        1.1    9.3   0.1    3.1  3  Rubredoxin     Rubredoxin
      0.045   13.7   2.4      0.045   13.7   0.4    2.0  2  zf-DNL         DNL zinc finger
       0.11   12.4   0.1       0.21   11.4   0.1    1.4  1  SNN_cytoplasm  Stannin cytoplasmic
       0.11   12.5   1.3        0.2   11.6   0.2    2.1  2  zf-CCHC_3      Zinc knuckle
       0.18   11.4   0.1       0.18   11.4   0.1    2.5  2  TF_Zn_Ribbon   TFIIB zinc-binding
        1.7    8.7   6.9       0.47   10.5   0.1    2.6  3  INCA1          INCA1
        6.9    6.6   6.4       0.93    9.4   0.9    2.1  2  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> DWNN  DWNN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.2   1.3e-34   1.7e-31       1      74 []       5      78 ..       5      78 .. 0.99
   2 ?    0.3   0.2      0.68   8.7e+02      12      58 ..     227     270 ..     223     282 .. 0.70

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 1.3e-34
        DWNN  1 vyYkFksqkdyskitfdgtsisvfeLKreIiekkklgkgtdfdLqiynaqtkeeydddselIprntsvivrRvP 74
                ++YkFksq+++s+i fdgt+++vf+LKreIi+++klg+gtdf+L+iyn +t++ey+dd+e+Ipr+tsv+vrR P
  CCD23735.1  5 IFYKFKSQRNTSRILFDGTGLTVFDLKREIIQENKLGDGTDFQLRIYNPDTNDEYEDDQEVIPRSTSVTVRRSP 78
                8***********************************************************************98 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.68
        DWNN  12 skitfdgtsisvfeL.KreIiekkklgkgtdfdLqiynaqtkeeyddd 58 
                 +++ +d +++s  e+  r+I+ + +      f  qi ++++ e+y+  
  CCD23735.1 227 KTVDIDPEKMSAEEMaQRKIMITDEG----TFVVQIADEHSWENYQRK 270
                 56677777777777634667766665....789999999999988754 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   5.3   1.1e-10   1.4e-07       1      21 []     184     204 ..     184     204 .. 0.99
   2 ?   -0.0   0.0      0.64   8.2e+02       3      11 ..     331     339 ..     330     341 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.1e-10
   zf-CCHC_2   1 PpgYvChiCgkkGHyIqdCPt 21 
                 PpgY+C +Cg+  H+I++CPt
  CCD23735.1 184 PPGYMCYRCGARDHWIKNCPT 204
                 9*******************8 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.64
   zf-CCHC_2   3 gYvChiCgk 11 
                 ++vC  Cgk
  CCD23735.1 331 DFVCPNCGK 339
                 689*99*98 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   4.2e-09   5.4e-06       2      72 ..     292     365 ..     291     366 .. 0.94

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4.2e-09
                 SGGGB-TTT-SB-SSEEEETTTEEEE..HHHHHHHHTT.SSB-TTT.-SB--GGGSEE-HHHHHHHHHHHHHCT CS
       U-box   2 PdefldpitlelmkdPvilpsgvvvd..rstiekhllsrdktdPft.repltqdqlipnlelKekIdefleekr 72 
                 Pd +++pit  l+  Pv +++  +vd  +++ie  l + d ++P   +e +  d li+++  K++++efl+e+ 
  CCD23735.1 292 PDTLKCPITGGLLSSPVKTSNCCNVDfsKKAIEDTLVESDFVCPNCgKEDILLDSLIDDEDKKKEVEEFLKEHA 365
                 9*********************77775599********9*****999*************************95 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.7   1.4e-06    0.0018      12      56 ..     295     337 ..     292     339 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.4e-06
                 SB-TTTSSB-SSEEEES.SS--EEEHHHHHHHCTTTS-EE-SCCC- CS
      zf-Nse  12 lkCPltlqpfeePvtsk.kCpHvFEreaIlelikrkktvkCPvagC 56 
                 lkCP+t   +  Pv+    C+  F ++aI++ +  +    CP   C
  CCD23735.1 295 LKCPITGGLLSSPVKTSnCCNVDFSKKAIEDTL-VESDFVCPN--C 337
                 89************755277888**********.666678998..4 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2     9e-06     0.012       4      23 ..     188     207 ..     184     210 .. 0.86
   2 ?    1.3   0.1      0.22   2.8e+02       5      10 ..     334     339 ..     332     341 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9e-06
                 B-TTT-SSBS-TTT---SEE CS
   zf-CCHC_5   4 lCpRCkkgkHwardChskfd 23 
                  C RC+ + Hw ++C   +d
  CCD23735.1 188 MCYRCGARDHWIKNCPTNTD 207
                 6**************98888 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.22
                 -TTT-S CS
   zf-CCHC_5   5 CpRCkk 10 
                 Cp C+k
  CCD23735.1 334 CPNCGK 339
                 *****9 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   2.2   1.2e-06    0.0016       3      17 ..     189     203 ..     189     204 .. 0.97
   2 ?    1.5   0.3      0.28   3.6e+02       2       9 ..     333     340 ..     332     341 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 1.2e-06
                 TSSSSSSSSTTTTST CS
     zf-CCHC   3 CynCGepGHiardCp 17 
                 Cy+CG   H+ ++Cp
  CCD23735.1 189 CYRCGARDHWIKNCP 203
                 **************9 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.28
                 CTSSSSSS CS
     zf-CCHC   2 kCynCGep 9  
                 +C nCG++
  CCD23735.1 333 VCPNCGKE 340
                 699***97 PP

>> DUF1610  Domain of unknown function (DUF1610)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.1     7e-05      0.09      15      24 .]     330     339 ..     329     339 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7e-05
     DUF1610  15 vvFpCPNCGE 24 
                 + F CPNCG+
  CCD23735.1 330 SDFVCPNCGK 339
                 67*******8 PP

>> Rubredoxin  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2         3   3.8e+03      34      42 ..     186     194 ..     184     197 .. 0.65
   2 ?    9.3   0.1   0.00089       1.1      22      39 ..     282     299 ..     277     303 .. 0.80
   3 ?    5.5   0.1     0.013        17      33      42 ..     330     339 ..     327     341 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3
                 T-BBTTTB- CS
  Rubredoxin  34 dWvCPdCgv 42 
                  ++C  Cg+
  CCD23735.1 186 GYMCYRCGA 194
                 567777776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00089
                 B-TT--GGGS-TT-BBTT CS
  Rubredoxin  22 iapgTkFedlPddWvCPd 39 
                 i  + +F+dlPd+ +CP 
  CCD23735.1 282 IWEKDHFKDLPDTLKCPI 299
                 555668***********7 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.013
                 TT-BBTTTB- CS
  Rubredoxin  33 ddWvCPdCgv 42 
                  d+vCP+Cg 
  CCD23735.1 330 SDFVCPNCGK 339
                 59******85 PP

>> zf-DNL  DNL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.3   6.7e+03       4      13 ..     187     196 ..     187     199 .. 0.75
   2 ?   13.7   0.4   3.5e-05     0.045      16      62 ..     317     365 ..     310     367 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.3
      zf-DNL   4 ftCkaCetrs 13 
                 + C  C+ r 
  CCD23735.1 187 YMCYRCGARD 196
                 6788888875 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.5e-05
      zf-DNL  16 eiskkaYekGvVi..vqCpgCknrHliaDnLgwfedkkktiedilkekg 62 
                  +skka e++ V     Cp+C ++ ++ D L   edkkk++e++lke+ 
  CCD23735.1 317 DFSKKAIEDTLVEsdFVCPNCGKEDILLDSLIDDEDKKKEVEEFLKEHA 365
                 68888888888862246**************999************975 PP

>> SNN_cytoplasm  Stannin cytoplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00016      0.21      12      22 ..     392     402 ..     391     404 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00016
  SNN_cytoplasm  12 VErKaKLTPNG 22 
                    V +K KLTPNG
     CCD23735.1 392 VDKKIKLTPNG 402
                    899******** PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00016       0.2       6      35 ..     188     218 ..     184     224 .. 0.79
   2 ?   -2.8   0.1       5.3   6.7e+03       6      14 ..     333     341 ..     331     341 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00016
   zf-CCHC_3   6 aCQkClkkGHwtYECknagerkyt..kRpsrt 35 
                 +C +C+ ++Hw   C+ +++ ++   kR  rt
  CCD23735.1 188 MCYRCGARDHWIKNCP-TNTDPNFegKRIKRT 218
                 8**************9.666655566787777 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.3
   zf-CCHC_3   6 aCQkClkkG 14 
                 +C +C+k++
  CCD23735.1 333 VCPNCGKED 341
                 6999*9975 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.5       1.2   1.6e+03       1      10 [.     187     196 ..     187     206 .. 0.75
   2 ?   11.4   0.1   0.00014      0.18       1      14 [.     332     345 ..     331     354 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.2
                   EEETTTTCEE CS
  TF_Zn_Ribbon   1 ykCPnCgstn 10 
                   y+C  Cg ++
    CCD23735.1 187 YMCYRCGARD 196
                   6888888765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00014
                   EEETTTTCEECHEE CS
  TF_Zn_Ribbon   1 ykCPnCgstnlveD 14 
                   ++CPnCg +++++D
    CCD23735.1 332 FVCPNCGKEDILLD 345
                   79******999888 PP

>> INCA1  INCA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       5.3   6.8e+03       6      31 ..      71      96 ..      68     104 .. 0.71
   2 ?   10.5   0.1   0.00037      0.47       3      86 ..     114     197 ..     112     203 .. 0.83
   3 ?    1.4   0.2      0.22   2.9e+02      72     102 ..     430     460 ..     422     461 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.3
       INCA1  6 srvvsrsappslPsqslrlmpqrygd 31
                s  v+rs++ +  s + r  pq +  
  CCD23735.1 71 SVTVRRSPSLKSSSVHNRNKPQSHNS 96
                55678888888888888888887665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00037
       INCA1   3 akcsrvvsrsappslPsqslrlmpqrygdifWenlsqrpsptWveeqyippllratgcsqpglyppeglPPPevlcrrkrrrpk 86 
                 a+ s+   rs++++  + s  +  +r  ++f ++ +q  +++    + +p   r+   + ++    eg PPP  +c r   r +
  CCD23735.1 114 ANTSKKPERSSAATPAAVSGVTEEERIANMFANQENQWEQTQQAMSDATPIFHRSNNAAATSNADNEGPPPPGYMCYRCGARDH 197
                 56666667777666555555566789999**99999999999999999*****************************9888776 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.22
       INCA1  72 PPPevlcrrkrrrpklagmqqGpgsiparvr 102
                 PPP ++   k+  p+++     + s+p++v+
  CCD23735.1 430 PPPHMMQNNKQSNPQSQNSSSTQQSMPSQVQ 460
                 899*************999999999999986 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.5      0.83   1.1e+03      23      39 ..     189     204 ..     187     204 .. 0.73
   2 ?    9.4   0.9   0.00073      0.93       1      40 []     296     337 ..     296     337 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.83
  zf-C3HC4_2  23 CqkCilrsLeekneCPl 39 
                 C+ C +r  +  ++CP+
  CCD23735.1 189 CYRCGARD-HWIKNCPT 204
                 99999994.44568885 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00073
  zf-C3HC4_2   1 kCpiCldmlkdpsvvt.pCgHvfCqkCilrsLeekn.eCPlC 40 
                 kCpi    l+ p+ +   C+  f +k i  +L e++  CP C
  CCD23735.1 296 KCPITGGLLSSPVKTSnCCNVDFSKKAIEDTLVESDfVCPNC 337
                 7***********9888467889*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1151  (0.0641977); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3391.93
//
Query:       CCD23736.1  [L=477]
Description: hypothetical protein NDAI_0C00750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-16   60.9  23.4    4.5e-09   36.1   3.7    3.1  2  TPT              Triose-phosphate Transporter family
    3.4e-06   27.3  31.9    0.00027   21.1   3.4    4.1  4  EamA             EamA-like transporter family
      5e-06   26.0   1.1      5e-06   26.0   1.1    2.4  3  PUNUT            Purine nucleobase transmembrane transport
  ------ inclusion threshold ------
      0.012   15.2   8.1      0.026   14.1   0.7    2.4  2  EmrE             Putative multidrug resistance efflux transpo
      0.031   14.3  10.6        1.2    9.2   0.9    3.2  3  TMEM234          Putative transmembrane family 234
      0.054   13.5   0.0       0.13   12.2   0.0    1.6  1  CoA_binding_3    CoA-binding domain
      0.099   12.6   0.3      0.099   12.6   0.3    4.2  6  TMEMspv1-c74-12  Plectrovirus spv1-c74 ORF 12 transmembrane p


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3  11.8   1.4e-08   3.6e-05       4     135 ..       6     176 ..       3     182 .. 0.91
   2 !   36.1   3.7   1.8e-12   4.5e-09     185     290 .]     276     385 ..     239     385 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.4e-08
         TPT   4 gllfllWYllnvvfnilnKkilnvf.....pyPltvsavqllvgsvlilvlwal.glkk................................rpkisse. 63 
                 +++++ WY+  ++  ++nK ++         yP++v++++ ++ ++l++++ ++ +++k                                  k +++ 
  CCD23736.1   6 LIYIAGWYFSAIALSLYNKWMFDPKnglgvSYPILVTVFHQTILWILAFIYIKIeNFNKrpkislddmeniprasapapaptttttttttnEHKNDWKf 104
                 68999*****************875556779****************9999999777779***************************999888889999 PP

         TPT  64 flkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgeklsllvylsLlpivgGvala 135
                 +lk+++p a++ +    +++vs++ v+     t+K+s  +F  ++s ++  ek++ ++ + + ++  Gv++ 
  CCD23736.1 105 YLKYLIPTAVATAGDIGFSNVSFKFVPLTIYTTIKSSSIAFVLLFSCIFKIEKFHWKLSMIVSIMFIGVVMM 176
                 999********999999********************************99999988888888888899875 PP

  == domain 2  score: 36.1 bits;  conditional E-value: 1.8e-12
         TPT 185 ilslllllPvallveg..vlktpsllkst.kvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvs.llnaiGt 279
                 i +l++  P+  ++++  ++++p +  +  k+s+ + ++ll++ g++ ++   + + +L+++  +t s+a  +K v+ I++s++v+++++s + n iG+
  CCD23736.1 276 ITALIIEKPFPGIFQSnlFKVSPGVNDTItKFSICKGFILLIIPGICVFILTYCEFGILQHTKVLTMSIAGIIKEVLTIIFSMIVLGERLSgIYNWIGM 374
                 23444444444444443344444433333458888888999*************************************************94569**** PP

         TPT 280 avaivGvflYs 290
                 +++++ v  Y+
  CCD23736.1 375 TIVLLDVSYYN 385
                 *****999997 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.7       1.2   3.1e+03      64      86 ..      35      57 ..       3      70 .. 0.47
   2 !   21.1   3.4   1.1e-07   0.00027      58     136 ..      99     177 ..      87     178 .. 0.91
   3 !    6.0   0.1    0.0048        12       2      27 ..     196     221 ..     195     227 .. 0.90
   4 !   13.1   9.9   3.2e-05     0.083      40     130 ..     269     379 ..     248     386 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.2
        EamA 64 wllllllgllgtvlafllffyal 86
                + + +l+ ++  ++ ++l f+ +
  CCD23736.1 35 VSYPILVTVFHQTILWILAFIYI 57
                33334444444444444444444 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.1e-07
        EamA  58 klslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                 k ++k +l +l+  +++t+   ++ + ++k ++ ++ + i s + +f+l++s ++  ek+ +k  + + ++++Gv++++
  CCD23736.1  99 KNDWKFYLKYLIPTAVATAGDIGFSNVSFKFVPLTIYTTIKSSSIAFVLLFSCIFKIEKFHWKLSMIVSIMFIGVVMMV 177
                 4478888888888889************************************************************997 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0048
        EamA   2 lgillallaalfwaiyfvlskillrk 27 
                 +g++l+l+aa+++++ +v+++ +lr+
  CCD23736.1 196 FGAFLVLAAACLSGLRWVYTQLILRN 221
                 799******************99987 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 3.2e-05
        EamA  40 iagillliiallkegkl......aklslkd.............wllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgeklt. 118
                 i gi l+i+al+ e+++      + +++++              ++ll++  +++++  ++ f  l++t++ + s++  +  v+t+i+s+++lge+l+ 
  CCD23736.1 269 IMGITLFITALIIEKPFpgifqsNLFKVSPgvndtitkfsickGFILLIIPGICVFILTYCEFGILQHTKVLTMSIAGIIKEVLTIIFSMIVLGERLSg 367
                 66666666666666666555544222222244445555544333344555557888888999***********************************64 PP

        EamA 119 lkqllgivlill 130
                 ++ ++g+ ++ll
  CCD23736.1 368 IYNWIGMTIVLL 379
                 89*****99997 PP

>> PUNUT  Purine nucleobase transmembrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.2     3e+03     102     129 ..       2      29 ..       1      37 [. 0.86
   2 !   26.0   1.1   1.9e-09     5e-06      62     187 ..      93     219 ..      76     226 .. 0.72
   3 ?    1.1   1.2     0.072   1.8e+02     260     319 ..     331     391 ..     247     394 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.2
       PUNUT 102 stfslilatqLaFtaifsalinkqkftr 129
                  t +li+ +   F+ai   l+nk  f +
  CCD23736.1   2 KTITLIYIAGWYFSAIALSLYNKWMFDP 29 
                 6899999999999999999999988865 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 1.9e-09
       PUNUT  62 kettssslslkklvllyivlGllvavdnllyslgllylpvstfslilatqLaFtaifsalinkqkft..rfiinsvvlltisaallalssssdkpaees 158
                 ++t+++++ +k  +   i   + +a d  ++ +  + +p+ +++ i ++++aF  +fs ++   kf    ++i+s++++ + +++   +s s+    + 
  CCD23736.1  93 TTTNEHKNDWKFYLKYLIPTAVATAGDIGFSNVSFKFVPLTIYTTIKSSSIAFVLLFSCIFKIEKFHwkLSMIVSIMFIGVVMMVYKPNSTSNDEIDDY 191
                 2233333333334444455677777777888888888***********************999998622577888887777777777666666666555 PP

       PUNUT 159 kkkyvigfiltlaasllfaLlLslvellf 187
                  ++ + g++l+laa+ l +L    ++l+ 
  CCD23736.1 192 -SALIFGAFLVLAAACLSGLRWVYTQLIL 219
                 .89999************99988888776 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.072
       PUNUT 260 vgLvflvSslfsnvistvllpvvsvlavilfrdkfsav.kgvalllailgfasYvYgeyks 319
                  g++  +  l+  +  ++   ++ ++ +i++ +++s++   + + + +l ++ Y Y  yk+
  CCD23736.1 331 FGILQHTKVLTMSIAGIIKEVLTIIFSMIVLGERLSGIyNWIGMTIVLLDVSYYNYFRYKQ 391
                 3444444444445555555556666666777777766524566777777777777766665 PP

>> EmrE  Putative multidrug resistance efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.7     1e-05     0.026      69     127 ..     143     206 ..     121     215 .. 0.78
   2 ?    4.6   1.4     0.008        21     224     253 ..     351     380 ..     311     384 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1e-05
        EmrE  69 ivagllllplfkrkkiplkalllsllillGvvlvqlee....akel.slkelllgvlpvlvaaf 127
                 i   ll + +fk +k+++k  ++  ++++Gvv++ ++      +e+ + + l++g++ vl aa 
  CCD23736.1 143 IAFVLLFSCIFKIEKFHWKLSMIVSIMFIGVVMMVYKPnstsNDEIdDYSALIFGAFLVLAAAC 206
                 3333455667799*********************8876444444555678889*******9996 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.008
        EmrE 224 ifaligeilllnaalpsllglvGialiilG 253
                 ++++i  +++l++ l+ +++++G+++++l 
  CCD23736.1 351 VLTIIFSMIVLGERLSGIYNWIGMTIVLLD 380
                 68999**********************985 PP

>> TMEM234  Putative transmembrane family 234
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.2   0.00075       1.9      43     116 .]     104     177 ..      78     177 .. 0.80
   2 ?    0.7   0.0       0.2   5.1e+02      18      65 ..     231     279 ..     209     282 .. 0.75
   3 ?    9.2   0.9   0.00045       1.2      65     112 ..     334     381 ..     320     383 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00075
     TMEM234  43 lrlkyliplllNqsgSvlf.flllgkadlslavpiaNslafvfTvltelllgekvlkkktvlgmllvvvgialcv 116
                   lkylip ++   g + f +++ + ++l++   i  s +++f +l + + + +  ++k  + + ++++g++++v
  CCD23736.1 104 FYLKYLIPTAVATAGDIGFsNVSFKFVPLTIYTTIK-SSSIAFVLLFSCIFKIEKFHWKLSMIVSIMFIGVVMMV 177
                 4579*************995689999*****99986.44777889999999999999999999999999999875 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.2
     TMEM234  18 gskgleevkeksklsq.lllelkflllrlkyliplllNqsgSvlfflll 65 
                  s++++++ ++ +++q ++ +lk+  + + y+i +l   +g  lf  +l
  CCD23736.1 231 SSSNQTSEVSDLRIQQrVTSSLKKRKTHPMYTIYQLAPIMGITLFITAL 279
                 344444444455554459999999999999*999999999998888765 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00045
     TMEM234  65 lgkadlslavpiaNslafvfTvlte.lllgekvlkkktvlgmllvvvgi 112
                 l+++++ l++ ia  ++ v+T++ +  +lge++ +   ++gm++v++ +
  CCD23736.1 334 LQHTKV-LTMSIAGIIKEVLTIIFSmIVLGERLSGIYNWIGMTIVLLDV 381
                 555555.678899999999***999779*****************9765 PP

>> CoA_binding_3  CoA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.2e-05      0.13      19      71 ..     160     219 ..     154     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.2e-05
  CoA_binding_3  19 lrvlsawllvllllallsfslk.......dafSRlwlaywavvglvllivsrllvravlr 71 
                    +++++ +++ ++ +++++++ +       d++S l+++ + v+ +++l++ r++  +++ 
     CCD23736.1 160 WKLSMIVSIMFIGVVMMVYKPNstsndeiDDYSALIFGAFLVLAAACLSGLRWVYTQLIL 219
                    6777778888888888888632334677788**********************9977664 PP

>> TMEMspv1-c74-12  Plectrovirus spv1-c74 ORF 12 transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.3       6.1   1.6e+04      18      28 ..      14      24 ..       7      25 .. 0.80
   2 ?    0.1   0.1      0.32   8.1e+02      12      29 ..      48      65 ..      37      75 .. 0.53
   3 ?   -2.4   0.0       1.9   4.9e+03      18      30 ..     127     139 ..     126     140 .. 0.85
   4 ?   -1.6   0.2       1.1   2.7e+03       7      27 ..     262     282 ..     260     284 .. 0.79
   5 ?   -3.6   0.5       4.5   1.1e+04      11      21 ..     315     325 ..     313     338 .. 0.58
   6 ?   12.6   0.3   3.9e-05     0.099       5      25 ..     352     376 ..     350     398 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 6.1
  TMEMspv1-c74-12 18 FlyiGLsiyqK 28
                     F  i Ls+y K
       CCD23736.1 14 FSAIALSLYNK 24
                     66789999988 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.32
  TMEMspv1-c74-12 12 vivLgiFlyiGLsiyqKi 29
                     ++ +  F+yi +  + K 
       CCD23736.1 48 ILWILAFIYIKIENFNKR 65
                     322333666655555554 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.9
  TMEMspv1-c74-12  18 FlyiGLsiyqKik 30 
                      F ++ L+iy  ik
       CCD23736.1 127 FKFVPLTIYTTIK 139
                      7899999**9887 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.1
  TMEMspv1-c74-12   7 tiFSvvivLgiFlyiGLsiyq 27 
                      ti+ +  ++gi l+i  +i  
       CCD23736.1 262 TIYQLAPIMGITLFITALIIE 282
                      788888899999999887765 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 4.5
  TMEMspv1-c74-12  11 vvivLgiFlyi 21 
                      ++i+ gi ++i
       CCD23736.1 315 LLIIPGICVFI 325
                      56666665554 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 3.9e-05
  TMEMspv1-c74-12   5 LTtiFSvviv....LgiFlyiGLsi 25 
                      LT+iFS++++     gi+ +iG++i
       CCD23736.1 352 LTIIFSMIVLgerlSGIYNWIGMTI 376
                      9*****9986444259*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1153  (0.0643092); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3410.07
//
Query:       CCD23737.1  [L=469]
Description: hypothetical protein NDAI_0C00760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1296  (0.0722851); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.36
# Mc/sec: 3875.68
//
Query:       CCD23738.1  [L=177]
Description: hypothetical protein NDAI_0C00770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-44  152.3   2.0    1.3e-44  152.2   2.0    1.0  1  CGI-121   Kinase binding protein CGI-121
  ------ inclusion threshold ------
      0.026   14.6   0.4        1.2    9.2   0.0    2.5  3  DUF2294   Uncharacterized conserved protein (DUF2294)


Domain annotation for each model (and alignments):
>> CGI-121  Kinase binding protein CGI-121
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   2.0   1.5e-48   1.3e-44       1     162 []      19     175 ..      19     175 .. 0.96

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 1.5e-48
                 EES-S-HHHHHHTHC..CHCTT-EEE-GGG---HHHHHHHHHHHHHHHHHS---SSSHHHHHHHHHSSSS-HHHHHHHHB--TT-S-EEEEEEESSS-- CS
     CGI-121   1 FknVknaaelrkqllskraeldfafldaslilskehllsAvlrallaaargklktktlhsEilfsLspnnnIgealkrfgisdkttsllvvkvsssead 99 
                 Fk+V+n++ +r+++    a+ ++aflda+li+s+e+++sA+++al++ + ++l+tkt+ sE+lf+Lsp++nIg+a+k+fgi+d+++++++ kv s++++
  CCD23738.1  19 FKDVTNSKVIRSHI----ADSKIAFLDAKLIVSTEQVYSAIYKALIENKYNRLRTKTILSECLFCLSPTSNIGDAFKKFGIKDDSKNVICLKVLSNGES 113
                 9*************....44457**************************************************************************** PP

                 HHHHHHHHHHHS-SEEE--SH.HHHHH--HHHHHHHTT--..TT---SSHHHHHHHHHHHHHTX CS
     CGI-121 100 eeevlkslkevvegelvplee.eleeltdwkkikkiYklneleeekeeevkeledlvvsavalk 162
                  ++v k++ +vv+g+ +++++ +l++++d+  ++kiYkl+  ++ + ++++el+++ v+a++++
  CCD23738.1 114 LDDVNKEVLDVVDGTMIEFNDdNLKDMYDVTLVRKIYKLE--KDFQPATTTELSRALVNAIQIR 175
                 ****************************************..7788899999********9986 PP

>> DUF2294  Uncharacterized conserved protein (DUF2294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.35   3.2e+03      80      94 ..      18      32 ..      15      36 .. 0.82
   2 ?    9.2   0.0   0.00014       1.2      29      63 ..      36      70 ..      32      77 .. 0.87
   3 ?    2.7   0.0     0.015   1.4e+02      58     103 ..     118     163 ..     104     170 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.35
     DUF2294 80 lieeitgvkvislls 94
                l++++t+ kvi++++
  CCD23738.1 18 LFKDVTNSKVIRSHI 32
                678999999999885 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00014
     DUF2294 29 kttivddmiivrlegvlTpaEkfLaetkeGrelvk 63
                k+ ++d ++iv +e v + + k L+e+k +r   k
  CCD23738.1 36 KIAFLDAKLIVSTEQVYSAIYKALIENKYNRLRTK 70
                7889************************9776655 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.015
     DUF2294  58 GrelvkqvRteLveeikpelkelieeitgvkvisllsDistetger 103
                 ++e++  v  +++e   ++lk++   ++  k+ +l  D++  t ++
  CCD23738.1 118 NKEVLDVVDGTMIEFNDDNLKDMYDVTLVRKIYKLEKDFQPATTTE 163
                 5678888899999***********************9999888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1428.35
//
Query:       CCD23739.1  [L=786]
Description: hypothetical protein NDAI_0C00780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     9e-132  439.4   0.0   1.3e-131  438.8   0.0    1.2  1  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  438.8   0.0  7.3e-136  1.3e-131       1     328 []     335     741 ..     335     741 .. 1.00

  Alignments for each domain:
  == domain 1  score: 438.8 bits;  conditional E-value: 7.3e-136
                  TS-EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHT.............................. CS
  A_deaminase   1 nlpKvdlHvHldgclnpktllrlakkkgikeldekvveedeklltlqekfesLkeflydlsvdvlvlh.............................. 68 
                  n++Kvd+HvH+++c+n+k+llr++k+k+++++dekv+++d+k ltl+e+f+sL+++ ydls+d+l++h                              
   CCD23739.1 335 NVRKVDTHVHHSACMNQKHLLRFIKHKLRHSKDEKVIFRDGKVLTLAEVFQSLNLTGYDLSIDTLDMHahkdtfhrfdkfnlkynpigesrlreiflk 432
                  89************************************************************************************************ PP

                  .............................................................CCCCCCHHHHHHCCCCCHCTTCCCCCCCCSHHHHHHH CS
  A_deaminase  69 .............................................................wlievvrllavekakdlakdfvkylevifsPlfeata 105
                                                                               wli+++rl++++ +++++++f++++++if+Plfe+t+
   CCD23739.1 433 tdnyikgkyladitkqvlsdlenskyqnceyrisiygrsidewdklagwivdnkiishnirWLIQIPRLYDIYHKSGIVNNFQDICRNIFQPLFEVTK 530
                  ************************************************************************************************** PP

                  -GC.STCCHHHHCCCCCCCCCCHCCT-EEEEEECCETTTCCGHCCCHHHHHHCCCCCCCCCCCCC-TTSTTGGGHHHHHCCCCHTT-EEEEEESSSS- CS
  A_deaminase 106 gpq.lpelevvlkvvdgfdsvedeskvkerlilvksrkpeewseeinelasyyrdytvvnldllndekiepaslflklraeagkstllltpHaGEagg 202
                  +p+ +p+l+v+l++v gfdsv+desk  +r++++k++kp+ w++ +n+++syy++y+++++++ln           ++ra++g++tl+l+pH+GEag+
   CCD23739.1 531 NPKsHPKLHVFLQRVIGFDSVDDESK-VDRRFHRKYPKPSLWEAPQNPPYSYYLYYQYASMASLN-----------QWRAKRGFNTLVLRPHCGEAGD 616
                  **************************.99************************************...........********************** PP

                  CHHHHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-S...HHHHHHHHHHHH CS
  A_deaminase 203 lehvveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgtt...LieeYaiaaqvf 297
                  +eh+v+ +ll  a+ i+HG++lrk+p++qyl++l+q+p++++PlSN+al  fl+y++nP++++++rglnvsl+tDDPlqf++t   LieeY++aaq++
   CCD23739.1 617 PEHLVSSYLL--AQGISHGILLRKVPFVQYLYYLDQVPIAMSPLSNNAL--FLTYDKNPFPRYFKRGLNVSLSTDDPLQFSYTrepLIEEYSVAAQIY 710
                  **********..*************************************..*********************************************** PP

                  T--HHHHHHHHHHHHHCSSS-HHHHHHHCHC CS
  A_deaminase 298 klseedlaelarNsvkqsflsadekkklldk 328
                  kls++d++elarNsv+qs+++a+ k+++++k
   CCD23739.1 711 KLSNVDMCELARNSVLQSGWEAQIKEHWIGK 741
                  *****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 5754.97
//
Query:       CCD23740.1  [L=1084]
Description: hypothetical protein NDAI_0C00790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.8e-108  361.9   3.2   3.8e-108  361.9   3.2    3.1  4  MSC       Man1-Src1p-C-terminal domain
    3.6e-11   42.6   1.4    1.9e-10   40.3   1.4    2.3  1  HeH       HeH/LEM domain
  ------ inclusion threshold ------
      0.044   14.3   0.2      0.044   14.3   0.2    4.1  5  PRESAN    Plasmodium RESA N-terminal


Domain annotation for each model (and alignments):
>> MSC  Man1-Src1p-C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.64   3.9e+03     135     200 ..      16      85 ..      12      95 .. 0.66
   2 ?   -2.4   1.6      0.43   2.5e+03     132     149 ..     413     430 ..     365     491 .. 0.51
   3 ?   -1.7   0.6      0.26   1.5e+03     150     207 ..     575     637 ..     547     680 .. 0.63
   4 !  361.9   3.2  6.3e-112  3.8e-108       1     338 []     684    1070 ..     684    1070 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.64
         MSC 135 glseeeLkeslsekksksiskeefeelwkealkeLkke....eeivvredseseseksskekkkllrsts 200
                 +l + +L+++l e+   ++s ++ ++l+k   ++++ +     ei ++ + +se   ++++++ + +sts
  CCD23740.1  16 KLRVPDLRRILTENHVTYLSSSKKSDLLKLFKENIEPRlpelREIHLHAQPSSEGIIDTNHTSGRNTSTS 85 
                 5778899999999998999888888886666665555554448887777666665544444444444443 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.43
         MSC 132 kksglseeeLkeslsekk 149
                 ++s+  +eeL ++l+e+k
  CCD23740.1 413 QESEDRVEELDKILNEEK 430
                 233333333333333322 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.26
         MSC 150 sksiskeefeel...wkealkeLkke.....eeivvredseseseksskekkkllrst..slaklslk 207
                 +  +s++e+eel   ++++ +eL+k+     ++i ++e +     +s+++++++++s+  +++k+ ++
  CCD23740.1 575 KHPLSQDELEELsemLSSTDGELEKDlepedNDINMEETE-----RSTQSENETVSSSplETEKVAIT 637
                 3445555555553337777777887766555555444433.....34455556666654444444444 PP

  == domain 4  score: 361.9 bits;  conditional E-value: 6.3e-112
         MSC    1 lllvllilfglwYreekiavGyCgtgsetnsileeeeee........eeslleslkPkCtpCPehAiCysnlevkCepgyvlkphplslggllPlpp 89  
                  lll+++++++lwYre++i+vGyCgt+ +  + l  ++ +        +++l+++lkP+C pCPe+AiCysn+e+kC+p+y l ++ ++l+gllP++ 
  CCD23740.1  684 LLLIIPVIIALWYREQRIMVGYCGTEVDNRPSLIMRN-VdypyayeiDSALQTYLKPECLPCPENAICYSNMEMKCRPKYRLVESRWNLFGLLPVSA 779 
                  6899**********************94444333322.2358888889999********************************************** PP

         MSC   90 sCvpdsekerkvkevakkalelLreknakvecgeskddeekakksglseeeLkeslsekksksiskeefeelwkealkeLkkeeeivvredsesese 186 
                  sC++d++++++v+ev+kk+le+Lr+kna++ecg+s+dd      sglseeeL+e+++e++ ++i+++ef+++w++++++Lk+e+e+++r++s++  +
  CCD23740.1  780 SCQRDDQRDQLVSEVVKKSLEFLRTKNAQIECGRSTDDI----GSGLSEEELYEIFNEARVPWIDDDEFNDIWNQVISNLKEEPEVIWRQVSTNFFF 872 
                  **************************************9....9************************************************99777 PP

         MSC  187 ...................................................ksskekkkllrstslaklslkcrlrrsvretlaryrllllglllll 232 
                                                                      +sk++k ++rsts++++s+kc+++ +++et++r+r+l+++ l ++
  CCD23740.1  873 nafsierpknnntnifylnyrtmtrslqrippmtqaqpmiikgrkdiftkiPKSKKEKGTFRSTSTKHVSVKCKFQWEIYETYRRNRYLIWTGLSTA 969 
                  **************************************************97888999*************************************** PP

         MSC  233 llilylrsrlrsrraekerveelvkevlerLkkqkkkhaedpstapepylslvqLRDdvLqdehslkernrlWkkvekvv.eqnsnVrtsleevhGe 328 
                   l+++++++l+++ +ek+++ +++++vl+rL+k kk+  + p      yls++qLRD++L+d+++ k++++lWk+vek++ ++nsn++++l+e+hG+
  CCD23740.1  970 TLAKIVEKKLKNYFEEKAKIVTVTRDVLKRLQKVKKQGSNPP------YLSSIQLRDIFLADVVDFKRKAYLWKHVEKNLeHNNSNIKSTLMEIHGD 1060
                  **********************************99966665......********************************889************** PP

         MSC  329 imrvWeWiGs 338 
                  im++WeWiG+
  CCD23740.1 1061 IMKCWEWIGP 1070
                  *********6 PP

>> HeH  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   1.4   3.1e-14   1.9e-10       2      35 .]      15      48 ..      15      48 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 3.1e-14
         HeH  2 ksLtVaqLRriLvehgveyPsnaKKadLveLfnd 35
                k+L+V++LRriL+e+ v y s++KK+dL++Lf++
  CCD23740.1 15 KKLRVPDLRRILTENHVTYLSSSKKSDLLKLFKE 48
                79******************************86 PP

>> PRESAN  Plasmodium RESA N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.3   1.4e+04      49      57 ..     236     244 ..     193     280 .. 0.69
   2 ?   -0.7   0.6      0.34     2e+03      73      96 ..     421     444 ..     410     459 .. 0.60
   3 ?   14.3   0.2   7.3e-06     0.044       2      80 ..     822     901 ..     821     904 .. 0.93
   4 ?   -0.8   0.1      0.35   2.1e+03      41      62 ..     975     996 ..     960    1009 .. 0.76
   5 ?    0.1   0.2      0.18   1.1e+03      21      47 ..    1030    1056 ..    1014    1063 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.3
                 HHHHHHHTT CS
      PRESAN  49 leelakkyn 57 
                 +++  kk+n
  CCD23740.1 236 IKNNEKKKN 244
                 222222222 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHHHHHHHHS-S CS
      PRESAN  73 eitkelkklekeynknfynllkkk 96 
                 e+ k l++ +   n++f++  +++
  CCD23740.1 421 ELDKILNEEKTDTNNDFNKTTNQE 444
                 444445555555555555554443 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 7.3e-06
                 --HHHHHHHHT-S-.SEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHH CS
      PRESAN   2 lteeelnklinsln.eviskkdmyiiwnyvmknekkkyknmikkLsnyleelakkynipeeykkklwkeckneitkelkk 80 
                 l+eeel++  n+     i+  + ++iwn+v++n+k++ + + ++ s+++   a   + p++ ++++++  ++++t+ l+ 
  CCD23740.1 822 LSEEELYEIFNEARvPWIDDDEFNDIWNQVISNLKEEPEVIWRQVSTNFFFNAFSIERPKNNNTNIFYLNYRTMTRSLQR 901
                 79***********77*********************************99999999999999999999999999998875 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHHHHHTT--HHH CS
      PRESAN  41 mikkLsnyleelakkynipeey 62 
                 ++kkL+ny+ee ak   + +++
  CCD23740.1 975 VEKKLKNYFEEKAKIVTVTRDV 996
                 6899999999988776666555 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.18
                  HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      PRESAN   21 kdmyiiwnyvmknekkkyknmikkLsn 47  
                  k    +w++v kn++++ +n++  L +
  CCD23740.1 1030 KRKAYLWKHVEKNLEHNNSNIKSTLME 1056
                  444457888888888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1084 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1659  (0.0925317); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 7283.73
//
Query:       CCD23741.1  [L=468]
Description: hypothetical protein NDAI_0C00800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-56  188.1   0.0    1.5e-55  187.4   0.0    1.3  1  Rad52_Rad22  Rad52/22 family double-strand break repair prote


Domain annotation for each model (and alignments):
>> Rad52_Rad22  Rad52/22 family double-strand break repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.4   0.0   8.1e-60   1.5e-55       3     150 ..      12     157 ..      11     160 .. 0.97

  Alignments for each domain:
  == domain 1  score: 187.4 bits;  conditional E-value: 8.1e-60
  Rad52_Rad22   3 etlqskLekklgpeyvsqregksgkkvaylegskviqlaNevFgfnGWsseiesievdeieeeqegqrysvkaealvrvtlkdGtyrediGfgtatnv 100
                  e++q+kL+kklgpey+s+r g ++++vay+eg+++i+laN++Fg+nGWs+e++++++d+++e+q+  ++s++++a+vrvtl +GtyrediG+gt++n 
   CCD23741.1  12 EEIQAKLDKKLGPEYISKRIGFGSSRVAYIEGWRAINLANQIFGYNGWSTEVKNVTIDFLDERQG--KFSIGCTAIVRVTLANGTYREDIGYGTVENE 107
                  689**********************************************************9999..7****************************** PP

  Rad52_Rad22 101 pskgeafekakKeAvtdAlKrAllqfgnvlGnclydleqekkvkklkked 150
                  + k +afe+akK+AvtdAlKrAl++fgn+lGnclyd++  +k+ k+k  +
   CCD23741.1 108 RRKPAAFERAKKSAVTDALKRALRGFGNALGNCLYDKDFLSKIDKVKFDP 157
                  *******************************************9988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1118  (0.0623571); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3360.36
//
Query:       CCD23742.1  [L=752]
Description: hypothetical protein NDAI_0C00810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-96  323.9  13.8      3e-96  323.5  13.8    1.1  1  Ndc1_Nup  Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.5  13.8  1.7e-100     3e-96       2     610 ..     105     732 ..     104     733 .. 0.75

  Alignments for each domain:
  == domain 1  score: 323.5 bits;  conditional E-value: 1.7e-100
    Ndc1_Nup   2 vlhrRfvha.allllllsyllslllsl.sssllwswfplgpaglralllflsllpilvlrkaqlhvgprttssrlstllaslfslqtletllvyllSal 98 
                 ++++Rf+h+ ++l++++ +l++ll+++ ss   ++w     ++ r+l+++++++ i+++rk++lhv++ ++s++++t++++l s +++++ ++y+++ +
  CCD23742.1 105 ICKTRFSHLvTRLFFVTTLLQTLLITIlSSPQSFAWERVLLFFPRFLFIYIVSISIIITRKNYLHVESIGYSNWYTTIFGQLCSTRFVVYQFIYCVGTF 203
                 89************************955544666655556888******************************************************* PP

    Ndc1_Nup  99 lfaevyi..wslpedarlgwvtskssrerprlNerplflllsglvlalvysllhllfdrdrlsfkssfpivqpskyllkrlpsilkkslilslvlllvs 195
                  +a+ ++  +++++   l       sr ++ l    l+ +l   +++++y l+h++fd+d++sf ++++i+ p++y+ ++l  +++ksli +++l ++ 
  CCD23742.1 204 AIALALGdcFQISS---L-------SRNSASL--HKLYVWL---LIPTLYNLQHNIFDQDKISFPFESQIQLPQQYISRSLRHLVIKSLIMTITLPIMV 287
                 *******4334442...2.......2444555..8899999...******************************************************* PP

    Ndc1_Nup 196 piiyylllrsfiwslalillrlflnlprsaapppldslpf..nlsLllrtlllgflllllwelanllFdvyltegplkkgkpisseskdpngtLlsGLk 292
                 pi++ +l+  ++ +                    l++++f  nl+L++     +f +++++e++n++F++++++g+l+kgkpiss s+++++ Ll+GL+
  CCD23742.1 288 PILSLILPFNIVPR-------------------GLILIGFisNLKLAIL----SFWIFMNFEFINVAFSAHMSIGCLHKGKPISSLSPNSMEILLDGLS 363
                 ***77776666666...................2222333348888877....********************************************** PP

    Ndc1_Nup 293 skkplvklfAfqELaliaqssp.srRkaIFsdidrkggstWsqilkeClklikeltqrinergq..papkaapskapknkasapvkelprlsk.splkk 387
                 sk  ++kl+AfqELa++a+ss+ s+R ++++   +++ ++W+ il+eCl++i++++++++ + +  + +++++  +pk+  ++++++l + s  + +++
  CCD23742.1 364 SKRAFTKLTAFQELAYRATSSDsSLRLPLYKPNFKDS-NLWPLILRECLLVIQNTNESVTGYLRniEIQSSVN--QPKTMLATSNSNLGDKSLfDRQRQ 459
                 **********************************999.**************************653333333..233333333333333221022222 PP

    Ndc1_Nup 388 k....ddeifgn........sltaeaspkssssskegvekalsslakspgqspsptarls.......................prarkllekaksrlls 451
                 +    ++ ifgn                        +  + +  + +s ++++s   r+                        +++++  +++ s++  
  CCD23742.1 460 EeiirNEMIFGNapspnmlkY---------------ESLQNVPMPLPSRMATTSSRHRMPlrdenvlltpppahgsrgrrfqpSSSPSIYQRSPSNV-- 541
                 133444447774444444331...............2222222222222222111111112222233322222222333333333333333333333.. PP

    Ndc1_Nup 452 keqkealsestikkk.................vekelaqllksp..........................ligylFrqslrrrlealvsnpqliinaie 507
                                                 +  ++++++ks+                          +++ +F  s+++++++lv+ p +++++++
  CCD23742.1 542 --------------PthpfnepilthstgltrFFHFIVNTIKSSlssfffpsitpssssssnaektiphlSFFSMFCTSKKNEADKLVPLPICHAESVI 626
                 ..............033333356666666667334444433322455666677777788888888888888**************************** PP

    Ndc1_Nup 508 aLsnLvvaSltEDqyGvVqrdvpeIlrtLtsllealekfke.glpahwt....dekgeaesskrespk.eldevdelldalktalyeIllaFgeylndl 600
                 +L+ L+++Sl+E + G V ++v+++lr L  +++ l+kf+e ++ +++         ++ ++++ + k e d +++l++++ +a+ eI+l++ + l+d+
  CCD23742.1 627 SLMALLINSLDESPRGPVIASVGDVLRSLQLSINCLGKFTEwEPSPFKDvtaiY---SEGEEQEQKIKeEVDVISVLYNLSISAFLEIVLKYDDLLKDV 722
                 *****************************************9*99998895442...3333344344446789************************** PP

    Ndc1_Nup 601 rlspkvlrla 610
                 +l+++v++l 
  CCD23742.1 723 NLDEDVVKLT 732
                 *******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 5132.28
//
Query:       CCD23743.1  [L=167]
Description: hypothetical protein NDAI_0C00820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-15   57.3   1.6    1.8e-15   56.9   1.6    1.2  1  HIG_1_N         Hypoxia induced protein conserved region
  ------ inclusion threshold ------
      0.012   14.8   0.1      0.014   14.5   0.1    1.2  1  Phage_prot_Gp6  Phage portal protein, SPP1 Gp6-like
       0.55   11.0   0.1       0.55   11.0   0.1    3.4  4  M               M protein repeat


Domain annotation for each model (and alignments):
>> HIG_1_N  Hypoxia induced protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   1.6     3e-19   1.8e-15       2      52 .]      34      84 ..      33      84 .. 0.97

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 3e-19
     HIG_1_N  2 eplvpiGilatvgalvrglrsmkrgdskqsnrlmraRiaaQaftvlalvaG 52
                eplvpiG+l+t+ga+++++ + + g+++++++++r+R+++Q++t++alv G
  CCD23743.1 34 EPLVPIGALLTTGAVILAAQNVRIGNQVRAQHYFRWRVGLQGATLVALVTG 84
                8***********************************************976 PP

>> Phage_prot_Gp6  Phage portal protein, SPP1 Gp6-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.1   2.4e-06     0.014     306     338 ..      89     121 ..      77     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.4e-06
  Phage_prot_Gp6 306 gnaSgvalkykyslleqkaelkerefekalkel 338
                     g++S++a+k+k+  l+ ka++ e+++ + l+++
      CCD23743.1  89 GTTSAKAIKSKEDELKEKAKRREQLWIQELERR 121
                     89*************************999987 PP

>> M  M protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.9         1   6.2e+03      11      18 ..     101     108 ..      94     111 .. 0.63
   2 ?   -1.9   0.1       1.5   8.8e+03       4       8 ..     116     120 ..     115     124 .. 0.54
   3 ?    0.3   0.2      0.28   1.7e+03       2       9 ..     136     143 ..     135     143 .. 0.84
   4 ?   11.0   0.1   9.3e-05      0.55       3      17 ..     146     160 ..     144     164 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1
           M  11 qeLeeelq 18 
                  eL+e+ +
  CCD23743.1 101 DELKEKAK 108
                 56776655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
           M   4 keLEa 8  
                 +eLE 
  CCD23743.1 116 QELER 120
                 45554 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.28
           M   2 akkeLEae 9  
                  kk++E+e
  CCD23743.1 136 RKKTVESE 143
                 69****97 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 9.3e-05
           M   3 kkeLEaelqeLeeel 17 
                  k+LE+el++Le++l
  CCD23743.1 146 IKDLETELADLESKL 160
                 69**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1837  (0.10246); expected 358.6 (0.02)
Passed bias filter:                      816  (0.0455129); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1240.54
//
Query:       CCD23744.1  [L=992]
Description: hypothetical protein NDAI_0C00830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0063   16.2   0.0      0.022   14.5   0.0    1.9  1  ubiquitin  Ubiquitin family
  ------ inclusion threshold ------
      0.028   14.6   0.2       0.59   10.4   0.0    3.2  2  Tctex-1    Tctex-1 family
       0.12   12.6   0.0       0.55   10.5   0.0    2.2  1  TUG-UBL1   TUG ubiquitin-like domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.7e-06     0.022      11      48 ..     268     309 ..     259     314 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.7e-06
                 EEEEEETTSBHHHHHHHHHHHHT....SSGGGEEEEETTEEE CS
   ubiquitin  11 itleveesdtveelKekiaekeg....ipaeqqrLiysGkvL 48 
                 +++ +++++tv+++K+ i+        + ++++rLiy+G +L
  CCD23744.1 268 YEMWINPQTTVLQVKHFISCLYThskdLNVDHIRLIYKGHLL 309
                 67889*************998755777************998 PP

>> Tctex-1  Tctex-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.19   1.1e+03      47      70 ..     460     483 ..     437     535 .. 0.70
   2 ?   10.4   0.0   9.8e-05      0.59      30     102 ..     756     828 ..     691     829 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.19
                 SS..SCEEEEEEEEEETTTS-EEE CS
     Tctex-1  47 lelpryKfivnvtivqkkgqgmhs 70 
                 le+++y +i+n+ i+   ++ +++
  CCD23744.1 460 LEIKKYQLIINSKIIPLYSHDIQI 483
                 556677777777776655554443 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9.8e-05
                 HHHHHHHHHHHHHHTS.SS..SCEEEEEEEEEE.TTTS-EEEEEEEES-TTT-EEEEEEECTTSEEEEEEEEEE CS
     Tctex-1  30 stiinsilkalksestelelpryKfivnvtivq.kkgqgmhsasgaywdektDgmvsfkyenkgldvvvtvfwv 102
                 + ++ sil+++ + +  ++lp yK i   +i+q +k   m++  + + d+ tD+++ ++ +n +l++++ + ++
  CCD23744.1 756 KLLMFSILREIDQVNM-DKLPIYKRIFEKIIIQlEKITDMRLLERIIPDPRTDNIIMATLKNISLFILLLIPGI 828
                 5566788899886555.679*************66778****************************99988766 PP

>> TUG-UBL1  TUG ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   9.1e-05      0.55       6      50 ..      25      71 ..      21      73 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.1e-05
    TUG-UBL1  6 rrfkvkvtpnttlndvLeeackkfkld.ds.asytLkhnnkpldlsl 50
                   ++ + p t+l  vL+ + +++ ++  +  +y+Lk+n  ++dls+
  CCD23744.1 25 EPININIHPKTPLYRVLQYVHSRLPIQlGPiTNYCLKYNEEEVDLSQ 71
                56688999**********99999866415566*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1239  (0.0691059); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 6655.43
//
Query:       CCD23745.1  [L=196]
Description: hypothetical protein NDAI_0C00840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.7e-34  117.3   0.0    8.2e-34  116.2   0.0    1.5  2  AhpC-TSA    AhpC/TSA family
    8.6e-18   64.5   0.0    1.7e-17   63.5   0.0    1.4  2  Redoxin     Redoxin
    2.2e-10   40.2   0.1    5.3e-10   39.0   0.1    1.7  1  1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
  ------ inclusion threshold ------
      0.019   14.9   0.0      0.036   14.0   0.0    1.4  1  SCO1-SenC   SCO1/SenC


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   1.8e-37   8.2e-34       1     123 [.       5     137 ..       5     138 .. 0.97
   2 ?   -2.0   0.0      0.73   3.3e+03      34      58 ..     170     194 ..     167     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 116.2 bits;  conditional E-value: 1.8e-37
                 TTSB----EEE...STTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H........SSEEEE- CS
    AhpC-TSA   1 vgdkapdfelk...nadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes.......lnfpllsD 89 
                 v+++ap+f+ +   ++ +++vsl++y+gk+vvl f+p+++++vC+te+ a+++++++f+e+g++v+  s+ds++s+ ++ +  +       + +pl++D
  CCD23745.1   5 VQKQAPKFNKTaviDGVFDEVSLDKYAGKYVVLAFVPMAFTFVCPTEIIAFSDAAKRFEEQGAQVLFASTDSEYSLLAWTNIARkegglgpVDIPLIAD 103
                 679********999999**************************************************************98777789************ PP

                 TTSHHHHHTT-EETTTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  90 eegkvakaygvlkeekglalratfvidkegkiry 123
                 +++ ++++ygvl ee+g+alr+ f+id++g+ir+
  CCD23745.1 104 KNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRH 137
                 *********************************8 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.73
                 STST-CCHHHHHHHHHHCHHHCCCT CS
    AhpC-TSA  34 pkdwcpvCttelpalaklyeefker 58 
                 p +w+p+  t  p+  +  e f+++
  CCD23745.1 170 PCNWTPGSATIKPDVDASKEYFESA 194
                 7889999999999999988888876 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   3.7e-21   1.7e-17       4     138 ..       7     146 ..       4     155 .. 0.82
   2 ?   -2.8   0.0         1   4.5e+03      35      43 ..     168     176 ..     167     192 .. 0.77

  Alignments for each domain:
  == domain 1  score: 63.5 bits;  conditional E-value: 3.7e-21
                 SBB---E.CCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH........TT-TSEEEE-T CS
     Redoxin   4 dkaPdft.lplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk........eglkfpvlsDg 93 
                 ++aP+f+ ++ ++    +vsl++++gk vv+ fvp af+ +C +e++++ + a++++e g +v++ ++d+ ++   +w++          +++p+++D 
  CCD23745.1   7 KQAPKFNkTAVIDGVFDEVSLDKYAGKYVVLAFVPMAFTFVCPTEIIAFSDAAKRFEEQGAQVLFASTDS-EYSLLAWTNiarkegglGPVDIPLIADK 104
                 567777742223466789*********************************************7666665.55555555556669999999******** PP

                 TSHHHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCHT CS
     Redoxin  94 saaftkalGlrleedaseglrtpryavidedgkvvylevepepet 138
                 ++++++++G+ +ee   eg++++ +++id +g+++++   + +++
  CCD23745.1 105 NHSLSRDYGVLIEE---EGVALRGLFIIDPKGVIRHITINDLSVG 146
                 *********99886...589*****************99888765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1
                 EESTTT-HH CS
     Redoxin  35 fvpgafcPt 43 
                 ++p++++P 
  CCD23745.1 168 VLPCNWTPG 176
                 689999997 PP

>> 1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   1.2e-13   5.3e-10       2      39 ..     159     192 ..     158     193 .. 0.96

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.2e-13
                 HHHHHHHT-BB-TTT.TBT-EEE---SSHHHHHHHHHH CS
  1-cysPrx_C   2 LQladkhgvatPAnWkpGdkvivpPpateedavkryle 39 
                 +Q +dk+g + P+nW+pG  +i   +++ + a+k+y+e
  CCD23745.1 159 FQWTDKNGTVLPCNWTPGSATI---KPDVD-ASKEYFE 192
                 89********************...*****.*****98 PP

>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   8.1e-06     0.036      13      67 ..      24      76 ..      16      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.1e-06
   SCO1-SenC 13 avteedlegkpslvffgFthCpdvCpttlanmaevldalgeeaekvqplfiTvDP 67
                +v+ ++++gk++++ f+    + vCpt++   +++ ++++e++   q+lf + D 
  CCD23745.1 24 EVSLDKYAGKYVVLAFVPMAFTFVCPTEIIAFSDAAKRFEEQG--AQVLFASTDS 76
                788999***********999999*******************5..5667777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1519.76
//
Query:       CCD23746.1  [L=457]
Description: hypothetical protein NDAI_0C00850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-16   59.3   4.6    8.6e-16   57.5   4.6    2.0  1  Homeodomain  Homeodomain
  ------ inclusion threshold ------
      0.013   15.4   0.8       0.04   13.8   0.1    2.2  2  Homeobox_KN  Homeobox KN domain


Domain annotation for each model (and alignments):
>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   4.6   9.6e-20   8.6e-16       1      57 []     210     266 ..     210     266 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 9.6e-20
                  ST-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHH CS
  Homeodomain   1 rrkRttftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRakekk 57 
                  rrkR++ ++++l +L+++Fe++++p++++r eLA+ ++++++ V++WFqN+R+  kk
   CCD23746.1 210 RRKRRRTSSQELLILQTEFERCPTPNKKKRLELAEICKMSDKSVQIWFQNKRQSVKK 266
                  89**************************************************98876 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.74   6.6e+03       8      15 ..      82      89 ..      81      98 .. 0.68
   2 ?   13.8   0.1   4.5e-06      0.04       9      39 ..     232     262 ..     229     263 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.74
  Homeobox_KN  8 nPYPseed 15
                 nP P+ ed
   CCD23746.1 82 NPLPTPED 89
                 78888876 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 4.5e-06
  Homeobox_KN   9 PYPseedKeeLlkeTglsvkqitnWFINaRr 39 
                  P P+++++ eL++ +++s k ++ WF N R+
   CCD23746.1 232 PTPNKKKRLELAEICKMSDKSVQIWFQNKRQ 262
                  66999999*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 3296.05
//
Query:       CCD23747.1  [L=146]
Description: hypothetical protein NDAI_0C00860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-57  192.7   2.7      3e-57  192.5   2.7    1.0  1  Ribosomal_S13  Ribosomal protein S13/S18
     0.0042   15.9   0.0     0.0059   15.4   0.0    1.2  1  FbpA           Fibronectin-binding protein A N-terminus (FbpA


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.5   2.7   3.3e-61     3e-57       1     128 []      16     144 ..      16     144 .. 0.99

  Alignments for each domain:
  == domain 1  score: 192.5 bits;  conditional E-value: 3.3e-61
  Ribosomal_S13   1 RilgtdidgkkkveialtaikGiGrrkakiilkkadvdedkrigelteeeiekieeivenkaqykipnwi.nrqkdikdGkdshvvendlrrklre 95 
                    R+l+t++dg+ k+++alt+ikG+Grr+++ ++kkadvd +kr+gelt+ee+e+i++i++n+++ykip+w+ nrqkdi+dGkd+h ++n++++klr+
     CCD23747.1  16 RLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFlNRQKDITDGKDYHSLANNVESKLRD 111
                    89********************************************************************************************** PP

  Ribosomal_S13  96 dieRlkkirsyrGlRHkrGlkvRGQrTkttgRt 128
                    d+eRlkkir++rG+RH++Gl+vRGQ+TkttgR+
     CCD23747.1 112 DLERLKKIRAHRGIRHFWGLRVRGQHTKTTGRR 144
                    ********************************7 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.6e-07    0.0059     188     237 ..      27      75 ..       5     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.6e-07
                 XXHHHHHHHBTTXXHHHHHHHHTTXSSSH...............HHHHHH CS
        FbpA 188 dlvkaLvkafqGlspllaeelleragldketsakelseedlerlyealqe 237
                 ++v aL ++++G+++ +++ ++++a +d +++a el++e+ler+ + +q+
  CCD23747.1  27 KIVYAL-TTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQN 75 
                 455555.5568*********************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1071.79
//
Query:       CCD23748.1  [L=271]
Description: hypothetical protein NDAI_0C00870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-46  158.7   0.0    1.6e-46  158.4   0.0    1.1  1  Ribosomal_L4  Ribosomal protein L4/L1 family


Domain annotation for each model (and alignments):
>> Ribosomal_L4  Ribosomal protein L4/L1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.4   0.0   9.2e-51   1.6e-46       1     190 [.      42     261 ..      42     263 .. 0.88

  Alignments for each domain:
  == domain 1  score: 158.4 bits;  conditional E-value: 9.2e-51
                   EEE-HHHHSS---HHHHHHHHHHHHHSS-EE------TTTSS---S-SS-SSSSSS---S-TTSTTSTT---SS---S.EEHHHHHHHHHHHHHHHH CS
  Ribosomal_L4   1 veLspkvFaapirrdlihravvaylanrrqgtastkarsevsgsgrklwkQKGtGrARvgsirspiargGgvahgpkperdystklnkKvrrlAlrs 97 
                   +++++++Fa+p+rrd++++avv++++nrr g ++ ++r++v +s++kl +QKG G+ARvg+++spi+++Gg+a + ++++dyst+l+kK+++lA+ +
    CCD23748.1  42 IPVPTSIFAVPLRRDILWKAVVYENDNRRVGASNPPGRGDVGYSRHKLLRQKGIGKARVGDANSPIRHNGGRALARNAPNDYSTELPKKMYSLAMVT 138
                   6899********************************************************************************************* PP

                   HHHHHHHTT-EEEES...---.-S.S--...........................HHHHHHHHHHTT-TTSSEEEEESSSSCHHHHHHTT-T.TEEE CS
  Ribosomal_L4  98 aLsakakqglllvvd...nleple.esk...........................tkelvellkklglksksvLivvsekdenlvlaarnlp.gvev 162
                   aLs+ +++g l+v++   ++  +  ++k                              +++++++ +l++k++L+v+s+ + +l+  +  ++ +v++
    CCD23748.1 139 ALSHLYRKGALFVIGendDV--ISsINKndigildiiktrsqereegekeeqdyrSVMFKKFIRENELTKKRLLFVTSKPRIGLLNFTGHFKkDVDI 233
                   ***************54422..2232223455555666666666667777666667777778888888********************9996269** PP

                   EESTT--CHHHHHSSEEEEEHHHHHHHH CS
  Ribosomal_L4 163 ieveslnvydllkadkvvitksavekle 190
                   ++ e+l+v+dllk +kv+++ + +++l 
    CCD23748.1 234 VQQEGLEVNDLLKSQKVFLELDVLKYLI 261
                   *************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 2040.70
//
Query:       CCD23749.1  [L=136]
Description: hypothetical protein NDAI_0C00880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-56  188.7   0.3    3.2e-56  188.5   0.3    1.1  1  Ribosomal_S17e  Ribosomal S17


Domain annotation for each model (and alignments):
>> Ribosomal_S17e  Ribosomal S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.5   0.3   1.8e-60   3.2e-56       1     114 [.       1     117 [.       1     128 [. 0.93

  Alignments for each domain:
  == domain 1  score: 188.5 bits;  conditional E-value: 1.8e-60
                     XX----HHHHHHHHHHHHS-TTT--S-HHHHHHHHHHHS----SHHHHHHHHHHHHHHHHTTSS--SS---HHHHHHHHHHH------------- CS
  Ribosomal_S17e   1 mgrvrtktvKkaarviiekyyskltndFhtnkkvceevaiipskklrnkiaGyvthlmkriqkgpvrgislklqeeererrdnyvpevsaldqea 95 
                     mgrvrtktvK+a++ +ie+yy+klt+dF+tnk++c+e+a+i+sk+lrnkiaGy+thlmkriqkgpvrgis+klqeeerer+d+yvp+vsald ++
      CCD23749.1   1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPDVSALDLSH 95 
                     9******************************************************************************************6555 PP

                     ....----HHHHHHHHHH-X.XX CS
  Ribosomal_S17e  96 ....ievdkdtkemlkslgfesl 114
                         ++vd++t++++kslg++ l
      CCD23749.1  96 skgvLNVDNQTADLVKSLGLK-L 117
                     5567**************994.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1039.51
//
Query:       CCD23750.1  [L=557]
Description: hypothetical protein NDAI_0C00890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-122  409.3  18.2   2.7e-122  409.1  18.2    1.0  1  Nse5      DNA repair proteins Nse5 and Nse6


Domain annotation for each model (and alignments):
>> Nse5  DNA repair proteins Nse5 and Nse6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  409.1  18.2  1.5e-126  2.7e-122       9     495 ..       9     506 ..       1     530 [. 0.92

  Alignments for each domain:
  == domain 1  score: 409.1 bits;  conditional E-value: 1.5e-126
        Nse5   9 eeesdsessk....phyfVeltekhlsdfEklnslcllesydsllfslearlrrdlnssslvvppddiLivlitldtvsshpkksvirendpYnvtrsv 103
                 ++++  ++s     phyfVelte+hl  fE+lns+cll++yd++lf+le+++    n+++l++pp+di  vl+tl+t+s ++k++++++ d+Yn tr  
  CCD23750.1   9 VDYVIGNKSNerrlPHYFVELTERHLGVFEVLNSMCLLDNYDHILFFLECQM---VNTKTLPIPPYDICLVLLTLATTSNYYKADILQASDAYNFTR-- 102
                 44444444444779*************************************8...8999**************************************.. PP

        Nse5 104 kslekrslklldkyldiLnefdaekygryalellrcqfflaidti..ekelqsskkfrrrrpsslldvslkpsdvddnedwsllsfenpyssyislldk 200
                 +sl++r+lk+l+ y++iL efd+ ky++y+le lrcqffl+idt+  ++ ++  ++f+rr+ + ++  ++ +s++   + + l   +npy+sy+s l++
  CCD23750.1 103 QSLDQRALKILRFYIRILLEFDTSKYEQYDLEFLRCQFFLVIDTLspKRAYRNIDRFKRRKVENSKL-IYGESISI--NEDELKDLQNPYRSYLSSLER 198
                 *********************************************8777777777777777776655.77776555..5559***************** PP

        Nse5 201 ktsvlsnfllnrklsqkgefcneilwtLsnsldkfgasqekdnllleiseiwmpvldllldileldlmkrqdyyiqsetenkassalslke....pllt 295
                 k+svl+n+l+n kl q+gef+n+ilwtLsnsl      q++++l+l+++ +wmp+ld++l +++l    rq+y++++e+ + +s  l +++    pl +
  CCD23750.1 199 KKSVLGNTLINWKLTQPGEFINMILWTLSNSL------QDDPALYLSSHDVWMPILDIILELFNL----RQKYFLKNEIGKGISADLCVQRlsesPLSR 287
                 ********************************......***************************....****************************** PP

        Nse5 296 flkfildrklfkdfcedlfvncldkld.srdvrldiipvYlsivelnisnlhyrlvklspdykskkSmslRrkllsvcfklLsklfkgirlrrpk.ial 392
                 f+ +++++ + ++fc+++f+nc++ l+ s+++ + i+pvY++  e+++s l+++++k+++ yk++kS +lRrk+++ cfklL  +++ ++l++p+ ++ 
  CCD23750.1 288 FFQSVDSIHFTSRFCDYMFINCDYSLKgSDNSSTSIHPVYHG--ENQLSKLYVPRTKYTKVYKARKSFQLRRKIIGSCFKLLIHVPDKHKLISPRgMSS 384
                 **************************8678999*********..**************************************************98999 PP

        Nse5 393 dqfiikefrtlldfkdikqllaff.............llaedallellkndeervry......alllalgnkldpffeevlellkd.rilDlsidgste 471
                 ++ ++ ++rtl +f++i+q+  ff             llae +l e+++n ++  ++      +++  lg+    f  e++ l+++   +  ++++ te
  CCD23750.1 385 NDIVDGISRTLATFQNIEQFRSFFlsdslsqevffipLLAEGTLAEIIENHRQHQEEgpktsiKVVKYLGDT-EQFLLEFISLFEKgFMVPYCDKKITE 482
                 9***********************************************************884444444544.77766********7556677778889 PP

        Nse5 472 killsiekadiclivllryvyyeh 495
                 k+ l i+k dic++vl+ry+++  
  CCD23750.1 483 KVILEIKKGDICVLVLFRYLLHLI 506
                 9*****************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 4009.38
//
Query:       CCD23751.1  [L=187]
Description: hypothetical protein NDAI_0C00900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-16   59.3   0.0      4e-16   58.9   0.0    1.1  1  Pribosyltran  Phosphoribosyl transferase domain
     0.0064   15.9   0.0     0.0084   15.6   0.0    1.1  1  UPRTase       Uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   4.5e-20     4e-16       6     118 ..      34     153 ..      31     174 .. 0.90

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 4.5e-20
                   TT---EEEEEEETTEEEEEE..--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE...............EE----TTSEEEEE CS
  Pribosyltran   6 lenpaildavarlaaeilee..yngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargssdes.......rlledpagkkVliV 93 
                   ++ p ++++  ++ + +l++   + k d+++g +++G+ f++ la +L+v ++ vrk  + p+   +a+   ++e        ++ ++pag+ V+iV
    CCD23751.1  34 FRDPSLFQKLTDAFKMHLDKafPGTKVDYIIGLESRGFLFGPTLALALGVGFVPVRKAGKLPGECVQATY--EKEYgtdvfemQKDAIPAGSNVVIV 128
                   66777888888888888888877899************************************99999863..44457899*99************** PP

                   -SEESSSHHHHHHHHHHHCC-BSEE CS
  Pribosyltran  94 DDildtGgTllaalelLkekgpeev 118
                   DDi++tGg+  aa el++++g +++
    CCD23751.1 129 DDIIATGGSAAAAGELVEKVGSKVL 153
                   *********************9976 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.4e-07    0.0084     119     150 ..     119     151 ..      85     161 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9.4e-07
     UPRTase 119 i.aertvlllDpviaTGgsaaaaiqlLkergvg 150
                 i a ++v+++D +iaTGgsaaaa +l+ + g +
  CCD23751.1 119 IpAGSNVVIVDDIIATGGSAAAAGELVEKVGSK 151
                 235566*****************9999886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       327  (0.0182386); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1516.97
//
Query:       CCD23752.1  [L=362]
Description: hypothetical protein NDAI_0C00910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-24   85.9   0.1    5.3e-24   85.0   0.1    1.4  1  UDG       Uracil DNA glycosylase superfamily
  ------ inclusion threshold ------
      0.042   13.1   0.4       0.07   12.4   0.4    1.3  1  DUF2357   Domain of unknown function (DUF2357)


Domain annotation for each model (and alignments):
>> UDG  Uracil DNA glycosylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.1     6e-28   5.3e-24       6     151 ..     165     331 ..     161     334 .. 0.89

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 6e-28
                 TT-SEEEEESSTCHH.HHHHSSSS.-STT.--HHHHHHH.CCCCCCCHHG..............CTEEEEESSS....SEC.GCTTCCCCTCCHH.HHH CS
         UDG   6 pdakvvivGeaPgae.edatglpFsgrag.nllrkllne.aglkrdlese..............qgvyitnvvkcrppgnr.dtptsaeikacap.lle 85 
                  ++kvvi+G++P+++ ++a+gl+Fs+++    +++l n+  +lk+++ ++              qgv+++n+++    + r ++ +s++ k++++ +++
  CCD23752.1 165 DKVKVVIIGQDPYHNdNQAHGLAFSVKPPvPAPPSLRNIyKELKQNYSDFeinnkvgdlspwalQGVLLLNTAL----TVRaHNANSHS-KRGWEeFTK 258
                 679************999********6663777778788888888777779***********************....8666899****.********* PP

                 HHHHHHH........SSEEEEESHHHHHH..HHHHSCESCCCSCT.SEEEEES-SSTTTTT..TTTSHHHHHHHHH CS
         UDG  86 eeiellk........prlivllGktaakallgeklgklrgklleakirvlplphPsplnrn..ffksnpelkaeaw 151
                 + ie+l           +++l+G+ a k +   ++ k  ++ +++ i vl++ hPspl+++  ff++n+++k ++w
  CCD23752.1 259 RVIEILIkdrekegkTLVFLLWGNNAIKLV--TSILKSDEQKYKN-ILVLKSVHPSPLSASrgFFGNNHFKKINEW 331
                 *****99899***95555***********8..5666777999999.****************************** PP

>> DUF2357  Domain of unknown function (DUF2357)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   7.8e-06      0.07      94     196 ..      38     148 ..       9     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.8e-06
     DUF2357  94 qalklIlrqpherLveeeevvradklkkldsavl....eellkepeklgeve.......rlgkkllprrvrqekkeltvDTpENRFvKyvLerlekkle 181
                  a+k I++q  + L + e+  + d++k+ +sa++    e++++ep++    +       +++ +++   + ++     +DT E  + ++++e+ +k   
  CCD23752.1  38 SAVKNIEEQNDNVLPNGETAIKEDEVKGETSATAtiakEKVQTEPAL----KptteyliKAHFRNTLDPGTSKLLSCELDTIEDTWFRHLIEEFKKPYF 132
                 69**************************9998761111334444444....155569998888888888889999999****************99866 PP

     DUF2357 182 .dlkealkekereaet 196
                  +lk+++ + + ++e 
  CCD23752.1 133 lNLKQFILNEQAKYEV 148
                 6999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2524.65
//
Query:       CCD23753.1  [L=641]
Description: hypothetical protein NDAI_0C00920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.7    7.9  10.3       0.35   11.5   4.9    1.9  2  VP4_2     Viral protein VP4 subunit


Domain annotation for each model (and alignments):
>> VP4_2  Viral protein VP4 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2         1   1.8e+04      55      66 ..      21      32 ..      11      37 .. 0.53
   2 ?   11.5   4.9   1.9e-05      0.35      15      66 ..      94     144 ..      81     156 .. 0.78

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1
       VP4_2 55 asthtsllknnd 66
                 s  ts   nn+
  CCD23753.1 21 RSKSTSTFSNNN 32
                444444444443 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 1.9e-05
       VP4_2  15 sGntGsiinnyysqsyqdsvDlqlgdnaissgese.asedaasthtsllknnd 66 
                 +  tGsi  n  s++  ds+ +    na +  ++e + +d+ast t+++ +n 
  CCD23753.1  94 TRTTGSIRSNNSSEEVPDSITT--ATNANANVSNEvTQKDTASTDTNNIDENH 144
                 5579******************..6666666666624689********98663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1168  (0.0651459); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4612.18
//
Query:       CCD23754.1  [L=323]
Description: hypothetical protein NDAI_0C00930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-68  229.4   5.1    6.8e-68  229.2   5.1    1.0  1  OST3_OST6     OST3 / OST6 family, transporter family
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.024   14.6   0.0    1.5  1  Thioredoxin   Thioredoxin
      0.033   14.3   0.0      0.072   13.3   0.0    1.5  1  NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
      0.045   13.0   0.2      0.069   12.4   0.2    1.4  1  Sbt_1         Na+-dependent bicarbonate transporter superfami
        0.3   11.7   5.3       0.17   12.5   1.8    2.2  2  DUF5592       Family of unknown function (DUF5592)


Domain annotation for each model (and alignments):
>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.2   5.1   1.9e-71   6.8e-68       2     293 .]      26     321 ..      25     321 .. 0.95

  Alignments for each domain:
  == domain 1  score: 229.2 bits;  conditional E-value: 1.9e-71
   OST3_OST6   2 ellklakksngviklndenykellkgprdysvvvllTatspqfk...CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaP 97 
                 +++kl++++ ++i++++eny+el +g  d++ v+++T+++++++   Ce+C efe+ +++v+ +++++    +++++F+++d++e ++++++l+l+++P
  CCD23754.1  26 HVQKLKDQD-NIIRITEENYQELSTGVHDFYNVLYITMSGANNQgqfCEMCGEFETTLRKVSHAMKNQ--VPDTNVLFFIADVNEVPSLVSDLQLTNVP 121
                 567888888.9******************************99999*********************9..468************************** PP

   OST3_OST6  98 hlllfppkkgpk.esk..kkdtydfsrggf.daealakfisertgvkirikrppnyskiiitallvlllvlllklrrklllkilksktlwavlslliil 192
                 hl+++pp  +++ + +   +++y+++ + + d +++ ++i++ ++v++r++ ++++++++++++ +++l+l++k++    +++ k k  + +ls li l
  CCD23754.1 122 HLVVYPPPFNETfKWSvaHFYQYELPPERAgDLLRFGNYIAKLLNVQLRLETEFDMNEFLMYFCGFMALFLFFKKIIFPKFNN-KIKLAMIILSSLILL 219
                 *******66555423367*********9999********************************************99988766.9999999******** PP

   OST3_OST6 193 lftsGymfnqIrgvpfvakdekggisyfaggsqnQfgaEtqivallygllallvilLiklvprikn..akvqrvlvivllvlifllfslllslfriKnp 289
                  +++Gy+f++++g+pf+a+d++++i+yf+gg+++Qfg+E++ v+ +y++l+ lvi L+ + pr ++  +k q + ++v+++++f++fs++ls+++iK++
  CCD23754.1 220 PSITGYKFTEMNGIPFIARDKDDNIMYFSGGTGWQFGIEIFSVSSMYIILGSLVIGLV-YNPRWHKdsKKFQDLQSVVVACALFYMFSFFLSCYKIKSQ 317
                 **********************************************************.9999988789999*************************** PP

   OST3_OST6 290 gYpy 293
                  Yp+
  CCD23754.1 318 DYPF 321
                 ***8 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   6.8e-06     0.024      28      80 ..      70     127 ..      67     133 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.8e-06
                  TTSHHHHCHHHHHHHHHHHCTT.....TSEEEEEETTTSHHHHHHTT-SSSSEEEEEE CS
  Thioredoxin  28 pwCghCkalaPeleklaeelkd.....kvklakvdvdenedlakkyevegiPtlklfk 80 
                  ++C  C +++ +l k+++++k+     +v +   dv+e ++l+++++ +++P l++++
   CCD23754.1  70 QFCEMCGEFETTLRKVSHAMKNqvpdtNVLFFIADVNEVPSLVSDLQLTNVPHLVVYP 127
                  68*******************999999***************************9986 PP

>> NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     2e-05     0.072      21      44 ..      67      92 ..      59     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
  NOB1_Zn_bind 21 mtkkFCpkCGn..ktLkrvavsvden 44
                  ++ +FC+ CG+   tL++v+  ++++
    CCD23754.1 67 NQGQFCEMCGEfeTTLRKVSHAMKNQ 92
                  6779******9889******999887 PP

>> Sbt_1  Na+-dependent bicarbonate transporter superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   1.9e-05     0.069     153     199 ..     253     298 ..     177     309 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
       Sbt_1 153 kevlkeallnksvvlLlggliiGlltgekgleklepffedlFkgvLa 199
                 ++   e++  +s++++lg+l+iGl+++  +++k ++ f+dl + v+a
  CCD23754.1 253 WQFGIEIFSVSSMYIILGSLVIGLVYNP-RWHKDSKKFQDLQSVVVA 298
                 5666799********************9.555555555666555554 PP

>> DUF5592  Family of unknown function (DUF5592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.8   4.7e-05      0.17       3      74 ..     161     233 ..     160     244 .. 0.84
   2 ?   -0.6   0.1      0.56     2e+03      54      84 ..     272     302 ..     260     310 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.7e-05
     DUF5592   3 IpkeisselkinkaiyLtDlllll.vlllltmklsslvhaslvvlfyifviilviflviksktNpklrnykal 74 
                 I k ++ +l+++  + + ++l+    ++ l + +++++ ++++  +   +iil  +++++s+t  k  +++ +
  CCD23754.1 161 IAKLLNVQLRLETEFDMNEFLMYFcGFMALFLFFKKIIFPKFNNKIKLAMIILSSLILLPSITGYKFTEMNGI 233
                 5667788999999999999999651677788899****************************99887776655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.56
     DUF5592  54 lviflviksktNpklrnykalyLalvrkkkt 84 
                 lvi lv +++  +  ++++ l  ++v++   
  CCD23754.1 272 LVIGLVYNPRWHKDSKKFQDLQSVVVACALF 302
                 4455555555555555555555555554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2462.24
//
Query:       CCD23755.1  [L=447]
Description: hypothetical protein NDAI_0C00940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-10   41.7  36.3    2.3e-06   27.8  13.3    3.1  3  EamA             EamA-like transporter family
     0.0022   17.6   9.6     0.0022   17.6   9.6    1.9  2  SLC35F           Solute carrier family 35
     0.0057   16.5   3.4     0.0057   16.5   3.4    5.0  6  DUF3955          Protein of unknown function (DUF3955)
     0.0092   15.4  13.2      0.029   13.7   2.7    2.5  2  TPT              Triose-phosphate Transporter family
  ------ inclusion threshold ------
       0.16   11.1  13.4       0.27   10.4   6.1    2.5  2  PUNUT            Purine nucleobase transmembrane transport
        1.9    8.3   5.6          8    6.2   0.7    3.3  3  FeoB_C           Ferrous iron transport protein B C terminus
        7.2    6.8  12.7       0.32   11.2   0.5    3.3  3  Phage_holin_4_1  Bacteriophage holin family


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   1.7      0.36   9.2e+02       3      77 ..      12      52 ..       3      67 .. 0.47
   2 !   25.4   5.8   5.1e-09   1.3e-05      73     135 ..     185     247 ..     162     248 .. 0.87
   3 !   27.8  13.3   8.9e-10   2.3e-06       2     135 ..     279     419 ..     278     420 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.36
        EamA  3 gillallaalfwaiyfvlskillrkvspltltfvrfliagillliiallkegklaklslkdwllllllgllgtvl 77
                g++++ ++ ++w ++ +l+  +++                                    ++   +++  l+t++
  CCD23755.1 12 GLIMLGIVIILWVLSSFLINLIFE----------------------------------DDSYRKPFFITYLNTAA 52
                333333333444444444444433..................................33344444444333333 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 5.1e-09
        EamA  73 lgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 +  +la+++ + +l +ts++  ++++s++  ftl++++l+  e ++ ++++g  ++++G++ +
  CCD23755.1 185 ILWFLANFATNASLAYTSVASQTILSSTSSFFTLFIGALFHVEMINPLKVIGSTVSFIGIMSV 247
                 45688999****************************************************876 PP

  == domain 3  score: 27.8 bits;  conditional E-value: 8.9e-10
        EamA   2 lgillallaalfwaiyfvlskillrkvspl...tltfvrfliagill....liiallkegklaklslkdwllllllgllgtvlafllffyalkktsasn 93 
                 +g lla+++alf++iy +l k+ +++ s +    ++++  l+  ++l    +i++ l +++++ ++   +++++l+ ++ t++  +++ +a+  ts+ +
  CCD23755.1 279 IGNLLAIAGALFYGIYSTLLKRKVKDESRInvkIFFGFVGLFTLVFLwptiIILHYLGWESFEIPTDPRVICIVLMNCMITFVSDFCWAKAMLLTSPLT 377
                 799********************9999887433333333344444445543444555555558888899****************************** PP

        EamA  94 aslitslePvftlilsvlllgekltlkqllgivlillGvlli 135
                 +++ +s+++ ++++   ++ ++++ ++ l+g+ lil + ++i
  CCD23755.1 378 VTVGLSITVPLAMVGDLIFKHKSMPFLYLIGATLILGSFFII 419
                 ************************************999987 PP

>> SLC35F  Solute carrier family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.49   1.2e+03       5      46 ..      10      51 ..       5      61 .. 0.68
   2 !   17.6   9.6   8.5e-07    0.0022      86     296 ..     190     418 ..     173     421 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.49
      SLC35F  5 llislalGqvlsllitataltskylaekkinaPvlqtflnyv 46
                +l  ++lG v+ l + +  l++  + ++    P + t+ln +
  CCD23755.1 10 TLGLIMLGIVIILWVLSSFLINLIFEDDSYRKPFFITYLNTA 51
                444567777777777777777777777777777777777754 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 8.5e-07
      SLC35F  86 anylvvkayqytsltsvqlldcfaipvvlvlswlflkvryrlvkiigvvvcilGvvllvvsdvla...grr.......ansgsn...pvlGdllvlaGa 171
                 an+    +  yts+ s ++l + +    l +  lf     + +k+ig  v  +G+  ++ sd ++   gr+       ++ g++    ++G+ll +aGa
  CCD23755.1 190 ANFATNASLAYTSVASQTILSSTSSFFTLFIGALFHVEMINPLKVIGSTVSFIGIMSVIESDSHSlrkGRHlptsssiDENGNDttrILIGNLLAIAGA 288
                 8899999999***************999999999999999**********************9973334432222222122322222589********* PP

      SLC35F 172 tlyavsnvleeylvkk...lslvellgllglfGaiisaiqlailerkelkaihWdaeiallfvgfalvlfllys...llpilikktsatsvnlslltsd 264
                   y++  +l    vk+   ++++ ++g++glf  ++    ++il++   ++ +  ++  ++ +  + ++ ++ s    +   +  ts  +v+++l  + 
  CCD23755.1 289 LFYGIYSTLLKRKVKDesrINVKIFFGFVGLFTLVFLWPTIIILHYLGWESFEIPTDPRVICIVLMNCMITFVSdfcWAK-AMLLTSPLTVTVGLSITV 386
                 *****999999999871114556789*******************99999988888888888888888888776321333.344566666777776666 PP

      SLC35F 265 lyslliglflfhykvswlyllafvviliGlil 296
                   +++  l   h+ +  lyl+  ++il  +++
  CCD23755.1 387 PLAMVGDLIFKHKSMPFLYLIGATLILGSFFI 418
                 66777777777888999999998888766665 PP

>> DUF3955  Protein of unknown function (DUF3955)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   3.4   2.2e-06    0.0057       2      46 ..       9      53 ..       8      65 .. 0.91
   2 ?    2.0   0.2      0.07   1.8e+02      23      45 ..     200     224 ..     184     227 .. 0.71
   3 ?   -1.0   0.0      0.62   1.6e+03       4      17 ..     235     248 ..     233     252 .. 0.75
   4 ?   -0.7   0.8      0.49   1.3e+03      39      54 ..     277     293 ..     276     298 .. 0.51
   5 ?   -4.2   1.1       6.1   1.6e+04      44      53 ..     313     322 ..     311     325 .. 0.48
   6 ?   -3.3   1.2       3.3   8.4e+03       6      13 ..     409     416 ..     403     420 .. 0.41

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.2e-06
     DUF3955  2 yiigllllllgiilliisnisgsyvdedGiLhEPFfLipiGylll 46
                +++gl++l + iil+++s++    + ed  +++PFf +++++  +
  CCD23755.1  9 WTLGLIMLGIVIILWVLSSFLINLIFEDDSYRKPFFITYLNTAAF 53
                89************************************9987655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.07
     DUF3955  23 gsyvdedGiLhEP..FfLipiGyll 45 
                 +++v ++ iL     Ff++ iG l+
  CCD23755.1 200 YTSVASQTILSSTssFFTLFIGALF 224
                 5666666666543359999999888 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.62
     DUF3955   4 igllllllgiilli 17 
                 ig++  ++gi+++i
  CCD23755.1 235 IGSTVSFIGIMSVI 248
                 78888888888765 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.49
     DUF3955  39 ipiGylllligi.islv 54 
                 i iG ll ++g+ + ++
  CCD23755.1 277 ILIGNLLAIAGAlFYGI 293
                 45666666666633333 PP

  == domain 5  score: -4.2 bits;  conditional E-value: 6.1
     DUF3955  44 lllligiisl 53 
                 ++ ++g+++l
  CCD23755.1 313 FFGFVGLFTL 322
                 3334444444 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 3.3
     DUF3955   6 llllllgi 13 
                 ++l+l ++
  CCD23755.1 409 ATLILGSF 416
                 33333222 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   3.0    0.0017       4.3     214     286 ..     172     244 ..     153     248 .. 0.55
   2 !   13.7   2.7   1.1e-05     0.029     148     286 ..     282     415 ..     274     420 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0017
         TPT 214 slkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGv 286
                 slke++ l+    +l++l n  + + L+ +s  ++++ +++   + + +  l+  + +++l++iG++v+ +G+
  CCD23755.1 172 SLKETIKLSAEFCILWFLANFATNASLAYTSVASQTILSSTSSFFTLFIGALFHVEMINPLKVIGSTVSFIGI 244
                 4444444445555555555555555555555555555555555555555555555555555555555555554 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.1e-05
         TPT 148 isAlisnltfslrnifsKkllkklkdldalnlfaiitilslllllPvallvegvlktpsllkstkvslkevllllllsgvlfhlynqvaymvLervspv 246
                 + A++  l+  + + + K+ +k++  ++   +f ++++++l++l P+++++  +      + ++     +v++ +l++ ++ ++ + +  +++  +sp+
  CCD23755.1 282 LLAIAGALFYGIYSTLLKRKVKDESRINVKIFFGFVGLFTLVFLWPTIIILHYLGWESFEIPTD----PRVICIVLMNCMITFVSDFCWAKAMLLTSPL 376
                 556666666666677777777774449999999******************9955555455555....89***************************** PP

         TPT 247 thsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGv 286
                 t +v+ ++   + +v  +++ ++++ +l +iG+++ + G 
  CCD23755.1 377 TVTVGLSITVPLAMVGDLIFKHKSMPFLYLIGATLIL-GS 415
                 ********99999999999999999999999988754.44 PP

>> PUNUT  Purine nucleobase transmembrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.6    0.0071        18       5      61 ..      14      71 ..      11      83 .. 0.80
   2 ?   10.4   6.1    0.0001      0.27      58     178 ..     160     293 ..     152     307 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0071
       PUNUT  5 isiillligqalstLLlrlYfekggks.twlqtlvqtagfPllllpllllllskkrkq 61
                i + +++i  +ls+ L +l fe +  +  ++ t+++ta+f   llp+  ++l++ +++
  CCD23755.1 14 IMLGIVIILWVLSSFLINLIFEDDSYRkPFFITYLNTAAFIFYLLPTGNSILTNYKET 71
                45567778889***********99977479**********999999988888877766 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0001
       PUNUT  58 krkqkettssslslkklvllyivlGllvavdnllyslgllylpvstfslilatqLaFtaifsalinkqkftrfiin.svvlltisaallalssssdkpa 155
                 ++++ + + ++lslk+ + l+   ++l ++ n+     l+y +v   +++++t+ +Ft ++ al+    ++++ ++ s v ++  + ++ ++s+s    
  CCD23755.1 160 NSSTVTAHLKRLSLKETIKLSAEFCILWFLANFATNASLAYTSVASQTILSSTSSFFTLFIGALFHVEMINPLKVIgSTVSFIGIMSVIESDSHS--LR 256
                 33334556678899999999****************************************************98772444333334444444333..22 PP

       PUNUT 156 ees..............kkkyvigfiltlaasllfaL 178
                 +                +++ +ig +l++a++l++++
  CCD23755.1 257 KGRhlptsssidengndTTRILIGNLLAIAGALFYGI 293
                 1111111111333333355566666666666666665 PP

>> FeoB_C  Ferrous iron transport protein B C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.7    0.0031         8       3      32 ..      12      44 ..      10      45 .. 0.79
   2 ?   -1.6   0.0      0.87   2.2e+03       4      26 ..     283     304 ..     279     307 .. 0.67
   3 ?    2.8   0.1     0.037        95       1      21 [.     401     421 ..     380     434 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0031
      FeoB_C  3 slYllgilval..lvalllkkttlkgep..spfv 32
                +l++lgi+++l  l+++l++ + +  ++   pf+
  CCD23755.1 12 GLIMLGIVIILwvLSSFLINLI-FEDDSyrKPFF 44
                7888888888877*******98.88887777776 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.87
      FeoB_C   4 lYllgilvallvalllkkttlkg 26 
                 l + g l+  + + llk+   k 
  CCD23755.1 283 LAIAGALFYGIYSTLLKRK-VKD 304
                 4556677777888888774.565 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.037
      FeoB_C   1 lfslYllgilvallvalllkk 21 
                 + +lYl+g  ++l + ++++ 
  CCD23755.1 401 MPFLYLIGATLILGSFFIINE 421
                 5789*******9999999876 PP

>> Phage_holin_4_1  Bacteriophage holin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   0.00012      0.32      53      98 ..      15      72 ..       4      81 .. 0.67
   2 ?   -2.4   0.1         2     5e+03      75      85 ..     181     191 ..     165     229 .. 0.62
   3 ?    1.2   2.6      0.15   3.9e+02      37      72 ..     305     344 ..     275     424 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
  Phage_holin_4_1 53 illlvlvahllD.vllgknle...........tlrtlviifyianeliSIleNagkmG 98
                     +l +v++  +l+  l++ ++e           +l t++ ify++  + SIl N ++ G
       CCD23755.1 15 MLGIVIILWVLSsFLINLIFEddsyrkpffitYLNTAAFIFYLLPTGNSILTNYKETG 72
                     333333333333033333333666788887755*********************9988 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2
  Phage_holin_4_1  75 rtlviifyian 85 
                      +++ i++++an
       CCD23755.1 181 AEFCILWFLAN 191
                      44555555554 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.15
  Phage_holin_4_1  37 k....lsskkglkgiikkvlilllvlvahllDvllgknle 72 
                      +    ++ ++g+ g++  v+ +  +++ h l +   ++ +
       CCD23755.1 305 EsrinVKIFFGFVGLFTLVFLWPTIIILHYLGWESFEIPT 344
                      2444477888999999999999999999976664444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       903  (0.0503653); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3226.41
//
Query:       CCD23756.1  [L=594]
Description: hypothetical protein NDAI_0C00950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.07   13.0   0.6        2.5    8.0   0.1    2.4  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1   0.00014       2.5       4      35 ..     104     137 ..     103     144 .. 0.87
   2 ?    3.0   0.1    0.0051        91      31      56 ..     150     175 ..     140     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00014
                 ESETTTSSHHHHHHHHHT.TSCEEEEEEEEE.TT CS
       RRM_1   4 gnLppdvteeeLkelFsk.fGpiksiklvrd.et 35 
                 +nLpp  ++ ++k+lF+  + +++++kl+ + ++
  CCD23756.1 104 SNLPPKFSDYDIKDLFQAkYTKFVKFKLFWElNK 137
                 6****************99*******99997443 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0051
                 EEETTTSEEEEEEEEESSHHHHHHHH CS
       RRM_1  31 vrdetgkskgfafVeFeskedAekAl 56 
                 + ++ +   ++afVe  +++d++k  
  CCD23756.1 150 FDQNFKHDSKVAFVELYTSRDMDKVR 175
                 4447788899************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1823  (0.101679); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.45
# Mc/sec: 3936.64
//
Query:       CCD23757.1  [L=843]
Description: hypothetical protein NDAI_0C00960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-36  124.9   0.1    1.4e-35  123.7   0.1    1.7  1  Metallophos  Calcineurin-like phosphoesterase
    1.6e-18   66.9   0.5    3.3e-18   65.8   0.5    1.6  1  STPPase_N    Serine-threonine protein phosphatase N-terminal 


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.1   1.6e-39   1.4e-35       2     201 ..     574     765 ..     573     768 .. 0.91

  Alignments for each domain:
  == domain 1  score: 123.7 bits;  conditional E-value: 1.6e-39
                  EEEEEESBTBTTCCTHHHHHHHHHHHH..HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl..lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygyl 88 
                  ++ ++gD+H     gq+ dll+l+ ++  + ++ ++l+l  GD+vdrg  + e++ l l++++kyp +++ll+GNHe        gf++e++++    
   CCD23757.1 574 PVKIVGDVH-----GQYGDLLRLFTKCgfP-PSANYLFL--GDYVDRGKQSLETILLlLCYKIKYPENFFLLRGNHEcanvtrvyGFYDECKRRCN-- 661
                  5789*****.....**********999633.35889999..*******6666666666************************************88.. PP

                  HHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESECEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESS.....CSSSCS CS
  Metallophos  89 gifsepwrsdaevfnnlplaslgsgslkvlllhGgspellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsply.....rgsgyl 178
                      ++w+++ ++fn lpla+++ g  k++++hGg  + l+s d+++++++++++p+ g   d++++d            ++ sp++     rg +y 
   CCD23757.1 662 ---IKTWKTFIDTFNTLPLAAIVAG--KIFCVHGGLSPVLNSMDEIRHVSRPTDVPDFGlinDLLWSD------------PTDSPNEwedneRGVSYC 742
                  ...899*******************..********44447****************************............777777788888****** PP

                  CCHHHHHHHHHHTTESEEEEESS CS
  Metallophos 179 fgdealedllkkygvdlvisGHt 201
                  ++  a+ ++l+k+g dlv+++H 
   CCD23757.1 743 YNKVAINKFLNKFGFDLVCRAHM 765
                  **********************7 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.5   3.7e-22   3.3e-18       1      48 []     524     572 ..     524     572 .. 0.92

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 3.7e-22
   STPPase_N   1 vDdiIerLlevrg..kpggkkvqLseaEIrqlCakareiFLsQPtLLeLe 48 
                 +D+ I++Ll++++  k+  k+v+L+++EI q+C+++reiFLsQP+LLeL+
  CCD23757.1 524 IDETIQKLLDAGYaaKR-TKNVCLKNSEILQICQASREIFLSQPSLLELS 572
                 8************8444.48999**************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1458  (0.0813208); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.28s 00:00:01.19 Elapsed: 00:00:00.49
# Mc/sec: 5165.93
//
Query:       CCD23758.1  [L=282]
Description: hypothetical protein NDAI_0C00970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-11   43.5   0.0      7e-11   42.6   0.0    1.4  1  Methyltransf_11  Methyltransferase domain
    1.3e-08   35.5   0.0    2.3e-08   34.6   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
      4e-05   23.5   0.1    6.2e-05   22.8   0.1    1.5  1  Methyltransf_31  Methyltransferase domain
    5.9e-05   23.7   0.1    5.9e-05   23.7   0.1    1.7  2  Methyltransf_12  Methyltransferase domain
  ------ inclusion threshold ------
      0.013   14.5   1.0      0.019   13.9   0.0    1.8  2  Methyltransf_9   Protein of unknown function (DUF1698)
        5.6    5.1   5.4        7.2    4.8   5.4    1.1  1  Atrophin-1       Atrophin-1 family


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   2.3e-14     7e-11       2      95 ..      49     139 ..      48     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 2.3e-14
                      EET-TTSHHHHHHHHTTSEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCCTSS-TT-EEEEEEES-CCC-...CCHHHHHHHHHHHEEEEE CS
  Methyltransf_11   2 dvGcGtGrlaealakrgarvvgvDlskemlklakekaseeglkvefvvadaeklpfednsfDlvvssevlhhv...edpekalkeiaRvLkpgG 92 
                      dvGcG+G++++   + +  ++g D s  ++++a+  +++++   +++ ad  +lp ++n+fD+ +s  v+hh+   e++ +a++ i+  ++ gG
       CCD23758.1  49 DVGCGNGKYLNVNPNVF--LIGSDRSSGLIECAH-DINNQY---NILIADGLNLPHRENTFDFAISIAVVHHWttrERRIDAIAHIMSKVRSGG 136
                      9************9555..***********9995.455544...58***************************888888999999999999999 PP

                      EEE CS
  Methyltransf_11  93 llv 95 
                       ++
       CCD23758.1 137 QVL 139
                      876 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   7.8e-12   2.3e-08       3      97 .]      49     136 ..      48     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 7.8e-12
                      EET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCGBSSSTTTEEEEEEESTGGG.SSHHHHHHHHHHHHHHEEE CS
  Methyltransf_25   3 dlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgdaedlpfedgsfDlvvssgalhh.lsdedlekalkeiarvLkp 95 
                      d+GcG+G+++    +      ++g D s++++e a+  ++    + +++ +d  +lp  +++fD+ +s+ ++hh +++e++ +a+++i + ++ 
       CCD23758.1  49 DVGCGNGKYLNVNPN----VFLIGSDRSSGLIECAHDINN----QYNILIADGLNLPHRENTFDFAISIAVVHHwTTRERRIDAIAHIMSKVRS 134
                      9******88766654....56**************99883....789*********************98888857777888999999999999 PP

                      EE CS
  Methyltransf_25  96 gG 97 
                      gG
       CCD23758.1 135 GG 136
                      98 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   2.1e-08   6.2e-05       8     116 ..      48     146 ..      41     251 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.1e-08
  Methyltransf_31   8 lDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdieeleklledekfDlilsnevlnaladpdkile...eie 98 
                      +D+GCG+G+++     +++p+  ++G D+s   ie A  +  ++++   +  ++d  +l+    +++fD+ +s +v+++ +  +  +     i 
       CCD23758.1  48 IDVGCGNGKYL-----NVNPNVFLIGSDRSSGLIECAHDI--NNQY---NILIADGLNLPH--RENTFDFAISIAVVHHWTTRERRIDaiaHIM 129
                      8******9986.....6899*******************8..5555...599********4..579***********77666554444333888 PP

  Methyltransf_31  99 rvlkpggilliedprlla 116
                      + +++gg +l  ++++l+
       CCD23758.1 130 SKVRSGGQVL-IYCWALE 146
                      8888888887.6888333 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1     2e-08   5.9e-05       2      98 ..      49     137 ..      48     138 .. 0.75
   2 ?   -3.1   0.3       4.6   1.4e+04      37      47 ..     219     229 ..     209     243 .. 0.45

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2e-08
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl...kdirevldnirkl 92 
                      ++GcG+G +l +    +p++ ++g+D s+  i     + a+ +nn+ n +  + l+l  ++  ++fD  +++ v+hh+   + + +++++i + 
       CCD23758.1  49 DVGCGNGKYLNV----NPNVFLIGSDRSSGLI-----ECAHDINNQYNILIADGLNLPHRE--NTFDFAISIAVVHHWttrERRIDAIAHIMSK 131
                      9******76655....5677999*********.....555555555555555555554333..5**************9955555999999999 PP

  Methyltransf_12  93 LkpgGr 98 
                      ++ gG+
       CCD23758.1 132 VRSGGQ 137
                      999997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.6
  Methyltransf_12  37 keklakrennn 47 
                      +ek +++e+++
       CCD23758.1 219 AEKERQKEEEK 229
                      22222222222 PP

>> Methyltransf_9  Protein of unknown function (DUF1698)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.3e-06     0.019     104     222 ..      31     145 ..      24     165 .. 0.81
   2 ?   -3.4   0.3       1.2   3.6e+03      53      76 ..     220     243 ..     202     254 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.3e-06
                     HHHHGGGS.--TT-EE.EEET-TTSHHHHHHHHCT-SEEEEE---HHHHHHHHHHHCCTTTTSSEEEE---GGGS-T.---EEEEEEES-GGG.. CS
  Methyltransf_9 104 Wdrvlphlsdlkgrti.ldvGcgnGyhlwrmvgegaklvvGidPselfliqfeavrkllgedqrahllplgieqlpe.leafdtvfsmGvlyh.. 194
                     W  v+  l+d k  ti +dvGcgnG +l     +   + +G d s+  + + + +     ++q ++l+  g++ lp+  ++fd   s+ v++h  
      CCD23758.1  31 WPIVTSFLNDQKTGTIgIDVGCGNGKYLN---VNPNVFLIGSDRSSGLIECAHDI-----NNQYNILIADGLN-LPHrENTFDFAISIAVVHHwt 116
                     888899999999888868*******9974...45667899***999877776655.....4566788888886.555499************977 PP

                     .-S-HHHHHHHHHCTEEEEEEEEEEEE-B CS
  Methyltransf_9 195 .rrsPldhllqlkdqlvkgGelvletlvi 222
                      r+  +d +  +  ++++gG++++    +
      CCD23758.1 117 tRERRIDAIAHIMSKVRSGGQVLIYCWAL 145
                     77889****************98876655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.2
                     SSS-EEE-SS..-HHHHHHHHHHH CS
  Methyltransf_9  53 kdsvtiekeeqlsegekkklekll 76 
                     +++ + e+e++ ++++ k+ +++ 
      CCD23758.1 220 EKERQKEEEKEWKSENDKESKTKY 243
                     333333444444444444444444 PP

>> Atrophin-1  Atrophin-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   5.4    0.0024       7.2     577     617 ..     199     240 ..     191     270 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0024
  Atrophin-1 577 kkreealekakreaeqk.areekerekerekererererere 617
                 k r e +   k+e e k    eker+ke eke + e ++e +
  CCD23758.1 199 KDRSEFIANWKKEQEEKrVAAEKERQKEEEKEWKSENDKESK 240
                 789999999999987651556777777777766666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1773  (0.0988901); expected 358.6 (0.02)
Passed bias filter:                      757  (0.0422221); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 1997.31
//
Query:       CCD23759.1  [L=662]
Description: hypothetical protein NDAI_0C00980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-14   51.4   0.1    1.2e-05   25.4   0.0    3.5  3  UBX       UBX domain
      8e-12   44.8   3.8    2.9e-11   43.0   0.1    2.8  3  UBA_4     UBA-like domain


Domain annotation for each model (and alignments):
>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.019   1.7e+02      39      60 ..      38      59 ..      14      70 .. 0.80
   2 !   25.4   0.0   1.3e-09   1.2e-05       2      46 ..     490     534 ..     489     558 .. 0.85
   3 !   19.2   0.0   1.1e-07     0.001      29      81 .]     574     646 ..     569     646 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.019
                HCCCCCTSEEEEETTTTEEGGC CS
         UBX 39 klfekeepFqLltsfPrreltk 60
                + ++k+++Fq +t+fP++e+ +
  CCD23759.1 38 EEEDKLNEFQTITNFPEDEIPN 59
                45667788*********99865 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1.3e-09
                 TTSSEEEEEEEETTSTEEEEEEESSSBHHHHHHHHHHHCCCCCTS CS
         UBX   2 eaedatrlqiRlpdGsrlvrrFkksdtlesvyeyVdsklfekeep 46 
                 e+++ ++lqiR+  G+rlvr+F++++tl+++y  +  +lf ++ +
  CCD23759.1 490 EPQKMATLQIRTSQGTRLVRKFDSRATLHDIYINIGCHLFLDNHS 534
                 678899**************************8877777766665 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHHHHCCCCCTS...................EEEEETTTTEEGGCCCCSBCCCC.TTTSCEEEEEEE CS
         UBX  29 lesvyeyVdsklfekeep...................FqLltsfPrreltksdkktLsdl.gllpnstlvlee 81 
                  +++++ ++ +l ++e++                   F+L+++fPr  +  ++++t +++ +l pn++l++e+
  CCD23759.1 574 ANELRAIINEELIKWESQlignsemhgdmetfeldfdFELVSPFPRFIVPTDKNMTVKEVtQLWPNGSLLVEK 646
                 5677888888888888777778888899999999999**********9999999*****************95 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.1   3.3e-15   2.9e-11       1      41 [.      40      83 ..      40      85 .. 0.90
   2 ?    2.2   0.0     0.018   1.6e+02      14      29 ..     317     332 ..     315     333 .. 0.91
   3 ?   -2.9   0.3       0.7   6.3e+03      19      30 ..     527     538 ..     526     539 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 3.3e-15
       UBA_4  1 deliaqFqaiTGa..de.ekArqlLeannWdLerAislyFdsge 41
                ++++++Fq iT++  de  ++++lL+ n+W+Le+ +s+yFd+++
  CCD23759.1 40 EDKLNEFQTITNFpeDEiPNIIKLLQNNGWNLEISLSRYFDNDW 83
                69***********64339***********************986 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.018
       UBA_4  14 deekArqlLeannWdL 29 
                 ++e+++qlL+++  dL
  CCD23759.1 317 NDERIVQLLRSHSDDL 332
                 79**********9987 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.7
       UBA_4  19 rqlLeannWdLe 30 
                 + +L+ +  dL+
  CCD23759.1 527 HLFLDNHSLDLN 538
                 55999**99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2177  (0.121423); expected 358.6 (0.02)
Passed bias filter:                      671  (0.0374254); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 4663.51
//
Query:       CCD23760.1  [L=211]
Description: hypothetical protein NDAI_0C00990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-44  149.7   0.0    9.1e-44  149.6   0.0    1.1  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD
     0.0087   14.3   1.2      0.011   13.9   1.2    1.1  1  EzrA         Septation ring formation regulator, EzrA
  ------ inclusion threshold ------
      0.032   14.7   0.0      0.052   14.0   0.0    1.3  1  DASH_Dad2    DASH complex subunit Dad2
      0.094   12.6   1.5       0.17   11.8   1.5    1.4  1  Takusan      Takusan


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.6   0.0     2e-47   9.1e-44      10     182 .]      35     206 ..      21     206 .. 0.94

  Alignments for each domain:
  == domain 1  score: 149.6 bits;  conditional E-value: 2e-47
  EMP24_GP25L  10 eekCfyeelkkgtlltgsyqvtdgg.aaldvdlsvkdpdgngerlvkkkdresegdfsftakesgeykvCfdnsfstksskkvsfdievgseasdykd 106
                  e+ C+ + +++g+l++++++   ++ +++++++ v+  d+ng+++ +k d +   +++fta++s  + vC+ n  ++  +++v++die gsea+d+++
   CCD23760.1  35 EPVCIRDFVSEGQLVVINIDSDGRVgDGQQLNVFVR--DSNGNEYRRKNDFAGNVRVAFTAPSSTSFDVCLVNMGTKGMKRSVELDIESGSEARDWNQ 130
                  667*******************888778********..77779999998898889*******************999999****************** PP

  EMP24_GP25L 107 sakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyLkrfFk 182
                  +  +ekl+++e+el+++ee +d+i +e++yl++reerlrdtnestn+rv ++sil ++vl+ ++++q+ yLkr+F+
   CCD23760.1 131 ISANEKLKPIEVELRRIEELTDEIVDELQYLKNREERLRDTNESTNRRVRNFSILIIIVLASLGAWQITYLKRYFR 206
                  ***************************************************************************6 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   1.2   2.5e-06     0.011      92     147 ..     126     181 ..     114     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.5e-06
                 -SHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTHHHHHHHHHHHHH CS
        EzrA  92 dkykfkkakkklaeleeeldeveekikkileelkelteseeknreeieklkekYre 147
                 +  + ++a++kl+ +e el ++ee +++i +el+ l++ ee+ r+  e+ + + r+
  CCD23760.1 126 RDWNQISANEKLKPIEVELRRIEELTDEIVDELQYLKNREERLRDTNESTNRRVRN 181
                 555667899*********************************99998887777665 PP

>> DASH_Dad2  DASH complex subunit Dad2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.2e-05     0.052      13      65 ..     143     194 ..     133     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
   DASH_Dad2  13 aLkqlrdlsdslakqleeLeeklstladgteavasVlanWqnvlraismaslk 65 
                 +L+++++l+d++ ++l+ L+++ + l+d  e+ ++ ++n+ ++l  i +asl+
  CCD23760.1 143 ELRRIEELTDEIVDELQYLKNREERLRDTNESTNRRVRNF-SILIIIVLASLG 194
                 599************************************9.577777777775 PP

>> Takusan  Takusan
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.5   3.8e-05      0.17       3      47 ..     121     165 ..     120     184 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.8e-05
     Takusan   3 sSsppailekeqakkklEeLkleLrkitreRdELrdiLalytegs 47 
                 s s++++ ++ +a++kl ++  eLr i++  dE  d L++  +++
  CCD23760.1 121 SGSEARDWNQISANEKLKPIEVELRRIEELTDEIVDELQYLKNRE 165
                 567888999******************************998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1188  (0.0662614); expected 358.6 (0.02)
Passed bias filter:                      864  (0.0481901); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.30s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1470.88
//
Query:       CCD23761.1  [L=182]
Description: hypothetical protein NDAI_0C01000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-09   36.5   5.0    1.1e-06   28.7   0.8    2.1  2  Rad33     Rad33


Domain annotation for each model (and alignments):
>> Rad33  Rad33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.3   3.4e-05      0.62       6      45 ..      24      62 ..      18      68 .. 0.87
   2 !   28.7   0.8   6.3e-11   1.1e-06      99     164 ..      78     146 ..      65     147 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 3.4e-05
       Rad33  6 kldeeiedeileaYselleeeqDlaLkqlpqlleeLkiPk 45
                 + +eiedeil+a     + ++D+  ++l +++e L++P+
  CCD23761.1 24 TVPDEIEDEILNALVGF-NLNHDMNTNDLNDFFELLQLPR 62
                6889********98654.5589****************96 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 6.3e-11
       Rad33  99 iDivDidkLiknlnrLvkfRnnykhikeswklfveaaad...lseseleeykLtlpdLkkvksklnLDs 164
                  +i+D +k+++ +  L+ f +n++ i++ w+l+v+ ++    + +  l ++ L+++dL+k+ +  +LD+
  CCD23761.1  78 TNIIDFNKIVRATYELLIFLDNSEIINNLWQLMVTCSGRdkqYPHVILVNHILSVKDLQKIATFADLDQ 146
                 58********************************998875655566778999***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1317.77
//
Query:       CCD23762.1  [L=992]
Description: hypothetical protein NDAI_0C01010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.2e-21   75.0  10.8    7.2e-21   75.0  10.8    3.4  2  Spt5_N       Spt5 transcription elongation factor, acidic N-t
    8.3e-21   73.7   0.0    2.6e-20   72.1   0.0    1.9  1  Spt5-NGN     Early transcription elongation factor of RNA pol
    1.5e-16   59.7  10.3    0.00021   21.2   0.1    4.7  4  KOW          KOW motif
    0.00048   20.6  28.3    0.00048   20.6  28.3    3.7  2  CTD          Spt5 C-terminal nonapeptide repeat binding Spt4
    0.00079   19.6   0.7       0.33   11.2   0.1    3.2  3  DUF3912      Protein of unknown function (DUF3912)
     0.0041   17.2   0.7       0.77    9.9   0.6    2.7  2  DUF150_C     RimP C-terminal SH3 domain
  ------ inclusion threshold ------
      0.048   13.5   1.8       0.13   12.1   0.3    2.7  2  Myosin_N     Myosin N-terminal SH3-like domain
        2.3    7.4  39.4        3.9    6.7  39.4    1.3  1  BUD22        BUD22
        4.5    6.0  24.4        9.2    5.0  24.4    1.5  1  Nucleo_P87   Nucleopolyhedrovirus capsid protein P87
        9.6    5.5  40.3         22    4.3  40.3    1.6  1  SDA1         SDA1


Domain annotation for each model (and alignments):
>> Spt5_N  Spt5 transcription elongation factor, acidic N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -23.3  40.5        10   1.8e+04      10      50 ..      82     107 ..      31     112 .. 0.42
   2 !   75.0  10.8     4e-24   7.2e-21       1      99 []     113     211 ..     113     211 .. 0.93

  Alignments for each domain:
  == domain 1  score: -23.3 bits;  conditional E-value: 10
                 XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXX CS
      Spt5_N  10 ddeeeeeeeeeveggeddfiaeeeaeeeeedserddrshre 50 
                 dd             +dd   +++ +++++++e++ +++r+
  CCD23762.1  82 DD------------DDDD---DDDDDDDDDEDEEQPAKRRR 107
                 11............1111...01111111111111111111 PP

  == domain 2  score: 75.0 bits;  conditional E-value: 4e-24
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X-GGGG- CS
      Spt5_N   1 FiddeAeVdddeeeeeeeeeveggeddfiaeeeaeeeeed.serddrshreldrrrqaeededaeeiaealeeRYgrsskkayrgeaeessevpqqlLL 98 
                 F+d+eAeV +dee+ee+ee+ e  ++ fi++e  eee ++ s r d+ hr+ld++ +++++eda+++a++l+eRYgrss+k+yr +a+    vpq+ LL
  CCD23762.1 113 FLDIEAEVSEDEEDEEDEEDSELVREGFITHEADEEEGATaSGRSDKLHRQLDQDLNKTSEEDAQRLAKELRERYGRSSSKQYRAAAQS-GYVPQRFLL 210
                 9***************************9997776666667899*********************************999999998776.66******* PP

                 - CS
      Spt5_N  99 P 99 
                 P
  CCD23762.1 211 P 211
                 9 PP

>> Spt5-NGN  Early transcription elongation factor of RNA pol II, NGN section
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   1.5e-23   2.6e-20       2      84 .]     218     303 ..     217     303 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.5e-23
    Spt5-NGN   2 iwavkctagqErevalslmkkilelakken...leIkSvfapdelkGyiyvEAdrkaaveralegipnvrgvvqglvpikEvedll 84 
                 +w v+c++g+E+e++++l kk ++l + ++   l+I S+f++d+  G iy+EA++++++e++++g+p+++  ++ l+p++E++ ll
  CCD23762.1 218 VWGVRCRPGKEKELVRKLLKKKFNLDRAMGkkkLKILSIFQRDNYVGRIYIEAPKQSVIEKFCNGVPDIYIAQKLLIPVQELPLLL 303
                 7***********************988877999************************************************98765 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   6.8e-05      0.12       2      26 ..     316     340 ..     315     348 .. 0.88
   2 !   13.5   0.3     3e-05     0.053       1      21 [.     467     487 ..     467     496 .. 0.90
   3 !   21.2   0.1   1.1e-07   0.00021       1      28 [.     518     545 ..     518     558 .. 0.91
   4 !   16.5   0.4   3.4e-06    0.0062       2      31 ..     737     766 ..     736     767 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.8e-05
                 TSEEEESSSTTTTCEEEEEEEETTT CS
         KOW   2 GdhVkVvsGphkGktGkVvkvdqhk 26 
                 G++V++ +G ++G+ + V ++ +++
  CCD23762.1 316 GNYVRIKRGIYRGDLALVDQISENN 340
                 9*****************9998776 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3e-05
                 TTSEEEESSSTTTTCEEEEEE CS
         KOW   1 pGdhVkVvsGphkGktGkVvk 21 
                 pGd V+++sG  +G +G+Vv 
  CCD23762.1 467 PGDRVEILSGEQRGSKGIVVG 487
                 8******************96 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 1.1e-07
                 TTSEEEESSSTTTTCEEEEEEEETTTTE CS
         KOW   1 pGdhVkVvsGphkGktGkVvkvdqhkvr 28 
                 pGdhV ++ G h G+ G V+ vdq  v+
  CCD23762.1 518 PGDHVTIINGEHQGDAGLVLMVDQGQVT 545
                 8***********************9854 PP

  == domain 4  score: 16.5 bits;  conditional E-value: 3.4e-06
                 TSEEEESSSTTTTCEEEEEEEETTTTEEEE CS
         KOW   2 GdhVkVvsGphkGktGkVvkvdqhkvrVfv 31 
                 G++V++    +kG+ G+V++v+ +k++V +
  CCD23762.1 737 GKTVRIRLAGYKGQLGIVKDVNGDKATVEL 766
                 99***********************99976 PP

>> CTD  Spt5 C-terminal nonapeptide repeat binding Spt4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6  28.3   2.7e-07   0.00048       1      71 []     834     934 ..     834     934 .. 0.97
   2 ?   -4.3   9.5        10   1.8e+04      16      63 ..     941     983 ..     934     991 .. 0.44

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 2.7e-07
         CTD   1 gsrTPawnsaggsrTPawgadgsrT...............................payggagsrtPaw.nagskTPahgaagsrTPayktawdgsrTp 67 
                 g+ TP w+s +g++TPa+ga+gs++                               +a+gg+g++t++w  +g++T+++g  g++ +++k++++g +T+
  CCD23762.1 834 GGMTPGWSSFDGGKTPAVGAHGSSSsvgststwggastwagqgaagaastwggggaSAWGGQGGNTSTWgGQGGATSTWG--GASAWGNKSSYGGVSTW 930
                 577********************999******************************************************..***************** PP

         CTD  68 aygg 71 
                 a+gg
  CCD23762.1 931 ASGG 934
                 *985 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 10
         CTD  16 PawgadgsrTpaygga.....gsrtPaw..nagskTPahgaagsrTPayktawdg 63 
                 + wg          ga      +  ++w  n+++ T+++g   s+  +++++w g
  CCD23762.1 941 STWG----------GAskhanAGGASTWaaNNEGGTSTWG-GASKHAGNSSTW-G 983
                 3443..........22222222333334325567777777.444444444555.3 PP

>> DUF3912  Protein of unknown function (DUF3912)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.025        44       7      32 ..     316     341 ..     311     360 .. 0.79
   2 ?   -1.0   0.0       1.2   2.2e+03       7      30 ..     519     542 ..     518     559 .. 0.80
   3 !   11.2   0.1   0.00018      0.33       6      52 ..     736     781 ..     733     786 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.025
     DUF3912   7 GqkvyvkdGPyrnklGvvkkkeqedd 32 
                 G  v +k+G yr+ l +v ++ +++ 
  CCD23762.1 316 GNYVRIKRGIYRGDLALVDQISENNL 341
                 677889*************9876654 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
     DUF3912   7 GqkvyvkdGPyrnklGvvkkkeqe 30 
                 G +v + +G +++  G+v  ++q 
  CCD23762.1 519 GDHVTIINGEHQGDAGLVLMVDQG 542
                 677889999*******99886664 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 0.00018
     DUF3912   6 lGqkvyvkdGPyrnklGvvkkkeqedddhftvviddqdidvelkdil 52 
                 lG++v ++   y+++lG+vk   + d+    +  ++++i+v++  +l
  CCD23762.1 736 LGKTVRIRLAGYKGQLGIVKD-VNGDKATVELHSKNKHITVDKTKLL 781
                 7999****************9.344445555558999****988765 PP

>> DUF150_C  RimP C-terminal SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.028        50      33      63 ..     536     564 ..     530     565 .. 0.88
   2 !    9.9   0.6   0.00043      0.77      10      55 ..     735     774 ..     733     780 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.028
    DUF150_C  33 ivevdeetitlevdgkkrkkettipladidk 63 
                 ++ vd+ ++t++ +++  ++e+ti+ ++++k
  CCD23762.1 536 VLMVDQGQVTFMSNQN--REEVTITANNLSK 564
                 5679999*****9999..999*******998 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00043
    DUF150_C  10 flGelVkvklklpvegrkkftGkivevdeetitlevdgkkrkkett 55 
                 +lG++V+++l     g k   G++++v++++ t+e   k   k +t
  CCD23762.1 735 ALGKTVRIRLA----GYKGQLGIVKDVNGDKATVELHSK--NKHIT 774
                 68*******99....********************9999..33334 PP

>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.8   3.2e+03      15      30 ..     482     497 ..     482     500 .. 0.85
   2 ?   12.1   0.3   7.3e-05      0.13      16      40 .]     752     777 ..     750     777 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.8
                 EEEEEEEESSEEEEEE CS
    Myosin_N  15 kGeIkeeeGdkvtVet 30 
                 kG ++ ++ d +tV++
  CCD23762.1 482 KGIVVGTTTDIATVKL 497
                 688999999*****98 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 7.3e-05
                 EEEEEEESSEEEEEE.TTSEEEEEEG CS
    Myosin_N  16 GeIkeeeGdkvtVet.edGktvtVkk 40 
                 G +k+ +Gdk+tVe+  ++k  tV+k
  CCD23762.1 752 GIVKDVNGDKATVELhSKNKHITVDK 777
                 7799********************87 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  39.4    0.0022       3.9     133     265 ..      34     181 ..       3     213 .. 0.46

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0022
       BUD22 133 kllgiekkkkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsedeekeeseddeeeeeededdedaeedeedeeaeerelaqydgllasddeded 231
                 + +  ++   kk ++ + k+ +++ ++k+ e+++e+++ +++++++e+ ++ +++dd++++++d+dded+e+ ++ + +e++++ + ++ +++d+ede+
  CCD23762.1  34 STASSDD---KKRPRDDGKDVENSTENKEGESSKETENNDDNNDNNEN-DNGDDDDDDDDDDDDDDDEDEEQPAKRRRQERNRFLDIEAEVSEDEEDEE 128
                 3333222...22222222222222222222222234444444444444.23333333333334444444444666777777777777776665555555 PP

       BUD22 232 ...............eyneetdeesseesdssdsses....asesesessek...k 265
                                e    ++ee   +s +sd+ +     + +++se++++   k
  CCD23762.1 129 deedselvregfithE---ADEEEGATASGRSDKLHRqldqDLNKTSEEDAQrlaK 181
                 5567778888876542...2222222222222222211211222222222223331 PP

>> Nucleo_P87  Nucleopolyhedrovirus capsid protein P87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  24.4    0.0051       9.2     344     451 ..      12     120 ..       2     134 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0051
  Nucleo_P87 344 tpattptretssdteaiksepektleeklreklpsdlsaqs..svpdkkseasavlptek.rkRrrarklqelssdededssdekevDkekerkRRree 439
                 t  ttp++ ts +  ++  e+  +      +k p d  + +  s ++k+ e+s+ + +++ +   + ++  + ++d+d+d++d+++ D+e+  kRRr+e
  CCD23762.1  12 TSDTTPKTATSDQV-SPPVEDVASTASSDDKKRPRDDGKDVenSTENKEGESSKETENNDdNNDNNENDNGDDDDDDDDDDDDDDDEDEEQPAKRRRQE 109
                 44556665555333.333333333344445566644444330044444444444443333033333344445556666677888889999999****** PP

  Nucleo_P87 440 DkdfLrlkalel 451
                  + fL ++a e+
  CCD23762.1 110 RNRFLDIEA-EV 120
                 ******998.44 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  40.3     0.012        22      83     181 ..      40     162 ..       4     209 .. 0.42

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.012
        SDA1  83 ekkekre...eeeedsddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeee...eeeeeeeeeeeeeek 175
                 +kk+ r+   + e+++++++ e+++e+e++dd+++++e++  + ++d++  +++d+++d++e+ee+++++++ +e +   +    e e +e+ee+ee++
  CCD23762.1  40 DKKRPRDdgkDVENSTENKEGESSKETENNDDNNDNNEND--NGDDDDD--DDDDDDDDDDEDEEQPAKRRR-QERN---RfldIEAEVSEDEEDEEDE 130
                 3333331121111122233333333333333332222222..1111111..112212222222222222222.2222...1344334444444444444 PP

        SDA1 176 ekkkk..........................k 181
                 e+++                           +
  CCD23762.1 131 EDSELvregfitheadeeegatasgrsdklhR 162
                 44444455665544444433333333322220 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1554  (0.0866752); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                       154  (0.00858944); expected 17.9 (0.001)
Passed Fwd filter:                        56  (0.00312343); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.33u 0.36s 00:00:01.69 Elapsed: 00:00:00.53
# Mc/sec: 5620.80
//
Query:       CCD23763.1  [L=69]
Description: hypothetical protein NDAI_0C01020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00071   20.0   0.0     0.0016   18.8   0.0    1.7  1  Ribosomal_L33  Ribosomal protein L33


Domain annotation for each model (and alignments):
>> Ribosomal_L33  Ribosomal protein L33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   8.9e-08    0.0016      28      47 .]      34      53 ..       9      53 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 8.9e-08
                   -EEEEEETTTTEEEEEEEE- CS
  Ribosomal_L33 28 LelkKYcprcrkhtlhkEtK 47
                       +Y+p++++h+l+kE+K
     CCD23763.1 34 VHQVRYDPVAQRHVLFKEAK 53
                   44679*************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 533.60
//
Query:       CCD23764.1  [L=283]
Description: hypothetical protein NDAI_0C01030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-41  139.2   1.5    1.3e-40  138.7   1.5    1.2  1  eIF3g      Eukaryotic translation initiation factor 3 subunit
    4.3e-12   45.7   0.0      8e-12   44.8   0.0    1.5  1  RRM_1      RNA recognition motif. (a.k.a. RRM, RBD, or RNP do
  ------ inclusion threshold ------
       0.22   11.9   1.9       0.39   11.1   0.2    2.2  3  zf-CCCH_7  Chromatin remodeling factor Mit1 C-terminal Zn fin


Domain annotation for each model (and alignments):
>> eIF3g  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   1.5   2.1e-44   1.3e-40       2     124 ..      11     129 ..      10     130 .. 0.89

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 2.1e-44
       eIF3g   2 keiiededgiktvieykinedgkkvkvtrkiretkvkekvskavaeRkkwaKfGdekgdkpgpnsatttvgeevelkleeekeeekeeeekekaklkkk 100
                 +eiie++dg k++i+yki e+g+k+k+t++++e+kv ekv+k+vaeR++w+K+G ekg+++gp+++ttt+++evel+l ++ + + eee+++k+k +  
  CCD23764.1  11 PEIIENPDGSKSIITYKI-ENGEKYKITQRVKEIKVVEKVHKSVAERRNWPKYGLEKGSPAGPQTSTTTLSDEVELRLSRNWR-QVEEERQQKEKGT-- 105
                 699**************9.***********************************************************87774.3444555555555.. PP

       eIF3g 101 ekklvkCriCkgdHfTskCPykdt 124
                 + k ++Cr+C++dH+T++CP+k++
  CCD23764.1 106 TVKSISCRLCGNDHYTMNCPFKSI 129
                 3466******************86 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   1.3e-15     8e-12       3      67 ..     201     267 ..     199     270 .. 0.90

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 1.3e-15
                 EESETTTSSHHHHHH.HHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTE CS
       RRM_1   3 VgnLppdvteeeLke.lFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggr 67 
                 +  L+++++e++L+e l+ +f pi+++ +vr+  tg+skg afV+F s+  AekAl  l+g+ +++ 
  CCD23764.1 201 IMQLNENADENNLREeLLFPFAPIQKCVVVRNrDTGRSKGLAFVTFSSEQMAEKALHFLDGRGFMNL 267
                 56799********8626667******************************************99985 PP

>> zf-CCCH_7  Chromatin remodeling factor Mit1 C-terminal Zn finger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.84     5e+03      38      42 ..      43      47 ..       7      57 .. 0.53
   2 ?   11.1   0.2   6.6e-05      0.39      68      87 ..     108     127 ..     103     130 .. 0.89
   3 ?   -2.0   0.0      0.78   4.7e+03      23      60 ..     184     221 ..     181     225 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.84
                S--S- CS
   zf-CCCH_7 38 ykvie 42
                 kv+e
  CCD23764.1 43 IKVVE 47
                23333 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.6e-05
                 SS-B-TTT--B--TT--GGG CS
   zf-CCCH_7  68 dsvrCrcCgieHvPgrCpLs 87 
                 +s+ Cr+Cg +H   +Cp  
  CCD23764.1 108 KSISCRLCGNDHYTMNCPFK 127
                 89****************86 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.78
                 ---------B-----S--S-----EESS---HHHHHHH CS
   zf-CCCH_7  23 seyvrelekDdpvfsykviekehrLvansvsklvldnf 60 
                 s+  r+++  d + + k+++ +++   n++ + +l+ f
  CCD23764.1 184 SDAYRDSRERDDMCTLKIMQLNENADENNLREELLFPF 221
                 66667776655666688888888888888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2044.80
//
Query:       CCD23765.1  [L=788]
Description: hypothetical protein NDAI_0C01040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-14   54.0   1.7    8.9e-14   51.4   0.1    2.7  2  PX          PX domain
  ------ inclusion threshold ------
      0.019   14.8   1.5      0.054   13.3   1.5    1.7  1  DUF19       Domain of unknown function (DUF19)
       0.11   12.8   7.1       0.83   10.1   0.9    3.2  2  CLZ         C-terminal leucine zipper domain of cyclic nucleo


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.1   1.5e-17   8.9e-14      25     112 ..     302     391 ..     281     392 .. 0.91
   2 ?    0.5   0.2     0.098   5.9e+02      52     106 ..     458     515 ..     449     517 .. 0.73

  Alignments for each domain:
  == domain 1  score: 51.4 bits;  conditional E-value: 1.5e-17
                 EEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSS......CTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHHS CS
          PX  25 evelktgakewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsv......rkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLev 112
                  ++++     ++v RrYs+F  L++ L++  p++++Pp+P+k+++ ++       ++d ++iekr++++ ++L+++ +  e+rn +v+++FL++
  CCD23765.1 302 VIQYNG----SKVTRRYSEFDTLYQVLKKLLPTIVVPPIPSKHPLINYfinpihVQNDLKIIEKRKRKFISFLNNCNKIDEIRNLSVFQKFLNP 391
                 455555....59*********************************999******999***********************************87 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.098
                 HHHHT...TSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHH.SHHH CS
          PX  52 lrkfp...rvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrn.sevl 106
                  ++++    +ki  lP  ++++s +k++  ++ ++ ++L +y +  +  +  ++ +++l
  CCD23765.1 458 IKFEKllkDYKIHLLPIYHTVKS-NKSNLIQLSNTIAKLGAYYNAFSLENNVISnDNNL 515
                 44444666888999999999997.889999999999******99986555444437766 PP

>> DUF19  Domain of unknown function (DUF19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.5     9e-06     0.054      30     108 ..     704     781 ..     684     785 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9e-06
       DUF19  30 elkdkkelkkfkksCeslksCfkslkCkeeeeakeakkkiekacdaveflskdfaeCleklekakkn..seClkewdpfsk 108
                 +l+ k+elkk++k+ e+lk+Cf+ ++ + ++ ++ + ++++     v++l+ + ++ l+ + k      +eClk+w++++ 
  CCD23765.1 704 DLERKEELKKLNKEVEKLKECFNLITKDINDVNESMENNLNHL---VSYLNMKWEKSLKYISKDIIYflQECLKSWKNAKA 781
                 7789999******************887655555555555544...55566666666666665544367999999999876 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.9   0.00014      0.83      12      64 ..     540     588 ..     537     597 .. 0.82
   2 ?    4.5   0.7    0.0078        47      30      68 ..     708     746 ..     703     748 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00014
         CLZ  12 dglLDeeaakagaeqkeleekverLessLeaLqtrlarLlaeyessqrkLkqR 64 
                 ++l+D+ +    + ++++ee++++L++s ++L+ r  +Ll+ y+  ++++k+R
  CCD23765.1 540 ENLIDNINS---NLEESVEEMIKSLDNSFKVLHFRKLKLLQ-YQIIETTIKKR 588
                 688888843...4579*******************999995.77777777766 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0078
         CLZ  30 eekverLessLeaLqtrlarLlaeyessqrkLkqRitkL 68 
                 +e +++L++++e L+  ++ + ++ + +++ +++ ++ L
  CCD23765.1 708 KEELKKLNKEVEKLKECFNLITKDINDVNESMENNLNHL 746
                 6889**********************9999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2436  (0.135869); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 5398.03
//
Query:       CCD23766.1  [L=375]
Description: hypothetical protein NDAI_0C01050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-27   95.6   1.0    2.5e-27   95.0   1.0    1.3  1  Sterol_MT_C      Sterol methyltransferase C-terminal
      4e-21   75.4   0.1    7.9e-21   74.4   0.1    1.4  1  Methyltransf_31  Methyltransferase domain
    1.6e-19   70.3   0.0    2.9e-19   69.5   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    1.5e-17   64.1   0.0      3e-17   63.1   0.0    1.6  1  Methyltransf_25  Methyltransferase domain
    9.9e-13   48.2   0.0    1.7e-12   47.5   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    1.5e-12   47.4   0.4      2e-12   47.0   0.4    1.1  1  CMAS             Mycolic acid cyclopropane synthetase
    1.8e-12   47.9   0.0    4.6e-12   46.5   0.0    1.7  1  Methyltransf_12  Methyltransferase domain
    5.9e-09   35.6   0.0    8.9e-09   35.0   0.0    1.2  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    0.00018   21.2   0.3    0.00051   19.6   0.2    1.7  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
     0.0026   17.5   0.0      0.004   16.9   0.0    1.2  1  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0031   16.7   0.9     0.0046   16.1   0.2    1.6  2  Methyltransf_3   O-methyltransferase
     0.0075   16.3   0.0      0.014   15.4   0.0    1.4  1  Methyltransf_32  Methyltransferase domain
     0.0087   15.5   0.0      0.018   14.5   0.0    1.5  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
     0.0089   17.0   0.0       0.02   15.9   0.0    1.7  1  Methyltransf_24  Methyltransferase domain
  ------ inclusion threshold ------
      0.022   14.2   0.0      0.083   12.3   0.0    1.9  2  Methyltransf_4   Putative methyltransferase
      0.039   13.6   0.0      0.076   12.6   0.0    1.4  1  MetW             Methionine biosynthesis protein MetW
      0.044   13.5   0.1       0.26   10.9   0.0    2.2  3  UPF0020          Putative RNA methylase family UPF0020
      0.056   13.0   0.0       0.11   12.1   0.0    1.4  1  MTS              Methyltransferase small domain
       0.16   11.8   0.0        1.7    8.5   0.0    2.1  2  Methyltransf_8   Hypothetical methyltransferase


Domain annotation for each model (and alignments):
>> Sterol_MT_C  Sterol methyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   1.0   2.6e-30   2.5e-27       2      66 .]     307     371 ..     306     371 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 2.6e-30
  Sterol_MT_C   2 tvfrmtkvGrfithnlvkvleflglapkGtqkvaefLekAadsLvaGGkegiFTPmylfvaRKPl 66 
                  t+fr++ +Gr +t+++v+v+e++g+ap+G++kv+e+Le+Aa +LvaGG++++FTPm+lfva+KP+
   CCD23766.1 307 TFFRTSYLGRKFTNTMVSVMEKVGIAPEGSVKVTEALENAAVGLVAGGRSKLFTPMMLFVAKKPE 371
                  89**************************************************************6 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.1   8.4e-24   7.9e-21       2     128 ..     118     243 ..     117     272 .. 0.90

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 8.4e-24
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgld.nveFeqgdieeleklledekfDlilsnevlnaladpdkil 94 
                      +k   vlD+GCG G  + e+a   ++++++vG+ ++   i +A+  a+k gld n+eF +gd+ +l+ ++e+++fD + + e+ ++ ++++k++
       CCD23766.1 118 KKQDLVLDVGCGVGGPAREIA--NFTGCHIVGLNNNDYQIAKAKWGAKKAGLDkNLEFIKGDFMDLNGTFEENTFDKVYAIEATCHAPNLEKCY 209
                      566679***************..4679***************************************988999********************** PP

  Methyltransf_31  95 eeiervlkpggilliedprllaelpakveeeska 128
                      +ei +vlkpgg++++ +  + ++++++ ee++k 
       CCD23766.1 210 KEIYKVLKPGGVFAVYEWVMTDKFDENNEEHQKI 243
                      **************99999888888888888875 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   3.1e-22   2.9e-19       1      96 []     124     224 ..     124     224 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 3.1e-22
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-..EEEETTEECCCTS..S-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEE CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl..kvefvvadaeklp..fednsfDlvvssevlhhvedpekalkeiaRvLk 89 
                      LdvGcG G  a+++a+   +++vg++ ++++++ ak  a+++gl  ++ef+++d+ +l+  fe+n+fD v++ e+ +h +++ek+ kei++vLk
       CCD23766.1 124 LDVGCGVGGPAREIANFTgCHIVGLNNNDYQIAKAKWGAKKAGLdkNLEFIKGDFMDLNgtFEENTFDKVYAIEATCHAPNLEKCYKEIYKVLK 217
                      8**************7667*************999888888888999**********9546********************************* PP

                      EEEEEEE CS
  Methyltransf_11  90 pgGllvi 96 
                      pgG++++
       CCD23766.1 218 PGGVFAV 224
                      ***9975 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   3.2e-20     3e-17       1      97 []     123     220 ..     123     220 .. 0.94

  Alignments for each domain:
  == domain 1  score: 63.1 bits;  conditional E-value: 3.2e-20
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT..TEEEEESBCCGBS..SSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl..nvefvqgdaedlp..fedgsfDlvvssgalhhlsdedlekalkeia 90 
                      vLd+GcG G  ++++a+  g ++++g+  ++ ++++a+  a+++gl  n+ef++gd+ dl+  fe+++fD v+++ a +h   ++lek++kei+
       CCD23766.1 123 VLDVGCGVGGPAREIANFTG-CHIVGLNNNDYQIAKAKWGAKKAGLdkNLEFIKGDFMDLNgtFEENTFDKVYAIEATCH--APNLEKCYKEIY 213
                      9***************9887.********************9999999***********97779**********988666..569********* PP

                      HHEEEEE CS
  Methyltransf_25  91 rvLkpgG 97 
                      +vLkpgG
       CCD23766.1 214 KVLKPGG 220
                      ******9 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   1.8e-15   1.7e-12      20     163 ..     117     274 ..      96     275 .. 0.83

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 1.8e-15
  Methyltransf_23  20 lraggrvLdiGcGtGillevlren.gfsvtgvDlspeaveiae...............kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpd 97 
                       +++  vLd+GcG+G  +++++ + g++++g   ++ ++++a+               k +++          ++++++fd ++++e ++h p+
       CCD23766.1 117 IKKQDLVLDVGCGVGGPAREIANFtGCHIVGLNNNDYQIAKAKwgakkagldknlefiKGDFMDLN------GTFEENTFDKVYAIEATCHAPN 204
                      566777*********9999999988*****************999998888855544444444444......448999**************** PP

  Methyltransf_23  98 ppellrqiatllkpgGylllseplasl...kedrllldwlylvpagrhi.sffsarslkelleeaGlevv 163
                      +++  + i++ lkpgG++ + e+   +   ++++  ++++y+ + g+ i ++fs +  +++l++ G++v+
       CCD23766.1 205 LEKCYKEIYKVLKPGGVFAVYEWVMTDkfdENNEEHQKIRYEIELGDGIpKMFSVDVARDALKNCGFDVL 274
                      *********************97555544478888999999999887777****99999999*****985 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.4   2.1e-15     2e-12       6     213 ..      66     274 ..      61     308 .. 0.79

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 2.1e-15
                 XHHHHHHHHTS-HHHHCTTS-TT---S----SSTT--HHHHHHHHHHHHHT.TTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHH CS
        CMAS   6 evenikahYDlsndffalfldptmtYsCAyferddmtLeeAqlaKldlile.klelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakk 103
                   e  ++ Y +  df++   + +  +s  +++ ++    +A +a+ ++ l   +++k+ + +Ld+GcG G+ +r+ ++  + ++vgl   + q ++ak 
  CCD23766.1  66 YNETTHSYYNIVTDFYEYGWGSSFHFSR-FYKGESF---QASIARHEHYLAyMAGIKKQDLVLDVGCGVGGPAREIANFTGCHIVGLNNNDYQIAKAKW 160
                 5667788999999999999999999994.6666666...5666666666551578********************************999999999999 PP

                 HHHTS-SSS-EEEEES-GGG---.....--SEEEEES-GGGTSGGGHHHHHHHHHHHS-TT-EEEEEEEEE--H.HHHHCTTCCCHHHHHHTSTTS--- CS
        CMAS 104 rvdeldlerkvevklldyedlde.....kvdrvvsvgafehvgkenydtffkklkkllkedGllllhtitslhk.kelaerglklkfidkeiFPgGelp 196
                   ++++l+++ e    d+ dl++      +d+v +++a+ h    n+++ +k+++k+lk++G++++   ++++k +e++e+++k   i+ ei  g  +p
  CCD23766.1 161 GAKKAGLDKNLEFIKGDFMDLNGtfeenTFDKVYAIEATCH--APNLEKCYKEIYKVLKPGGVFAVYEWVMTDKfDENNEEHQK---IRYEIELGDGIP 254
                 9********************987877889*****999988..579*******************9988777662445555544...666665555555 PP

                 BHHHHH...HHHHHTT-EEE CS
        CMAS 197 sieeie...eeiseagftvv 213
                 ++ +++   +  +++gf v+
  CCD23766.1 255 KMFSVDvarDALKNCGFDVL 274
                 54444311135566666665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   4.9e-15   4.6e-12       1      99 []     124     222 ..     124     222 .. 0.88

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 4.9e-15
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirk 91 
                      L++GcG+G  +r++++   +++++g+  +  +i  ak+k  ++++   +n+e+ + d  dl g    ++fD v+a+++ +h +++++  ++i+k
       CCD23766.1 124 LDVGCGVGGPAREIANF-TGCHIVGLNNNDYQI--AKAKWGAKKAGLDKNLEFIKGDFMDLNGTfeeNTFDKVYAIEATCHAPNLEKCYKEIYK 214
                      8*************998.***************..55555555555666888888888888777888*************************** PP

  Methyltransf_12  92 lLkpgGrl 99 
                      +LkpgG++
       CCD23766.1 215 VLKPGGVF 222
                      ******86 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   9.4e-12   8.9e-09      41     154 ..     113     227 ..      99     244 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 9.4e-12
                      HH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHTSS.TEEEEE--TTT-T..TS-T-EEEEEEES-GGG-S- CS
  Ubie_methyltran  41 klvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeegki.nieflqanaeeLp..feddsfDvvtvsfGlrnvtD 131
                       + + k+   vlDv +G g  a ++++  g   ++v+l+ n+  +  ++  +k+ g   n+ef++++ ++L+  fe+++fD v         ++
       CCD23766.1 113 YMAGIKKQDLVLDVGCGVGGPAREIANFTGC--HIVGLNNNDYQIAKAKWGAKKAGLDkNLEFIKGDFMDLNgtFEENTFDKVYAIEATCHAPN 204
                      4567788889************999988764..56777666666666777788999867************6559******87766677889** PP

                      HHHHHHHHHHHEEEEEEEEEEEE CS
  Ubie_methyltran 132 klkaLkeayrvlkpGGrlvvlef 154
                       +k  ke+y+vlkpGG + v e 
       CCD23766.1 205 LEKCYKEIYKVLKPGGVFAVYEW 227
                      *******************9986 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.2   5.5e-07   0.00051       3      75 ..     122     193 ..     120     196 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.5e-07
  Methyltransf_15   3 vilDlfsGaGGnviqfalv.fekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklklekikvdlv 75 
                      ++lD+ +G GG + ++a+  ++++++++ n  ++a a+  a+  g ++++ +++gd+++l  ++++++   d v
       CCD23766.1 122 LVLDVGCGVGGPAREIANFtGCHIVGLNNNDYQIAKAKWGAKKAGLDKNLEFIKGDFMDLNGTFEENTF--DKV 193
                      79****************87899**********************************997766655544..555 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.3e-06     0.004      61     167 ..     106     220 ..      95     242 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.3e-06
                 HHHHHHHHTT.--TT-EEEEES-TTSHHHHHHHHHHCTTCEEEEEESBHHHHHHHHHHHHHCTTC.SEEEEES-GG..GTTGGG-SEEEEEESSBBSS- CS
        PCMT  61 mvalalelle.lkkgarvLevGsGsGyltavlarlvgekgrvvsierikelveeakrnlkkldle.nvivvvgDGr..kGyeekaPYdaihvgaaapei 155
                  +   l ++  +kk++ vL+vG+G G  +  +a++ g  +++v+++     +++ak   kk +l+ n+ ++ gD    +G  e+  +d+++   a+ + 
  CCD23766.1 106 RHEHYLAYMAgIKKQDLVLDVGCGVGGPAREIANFTG--CHIVGLNNNDYQIAKAKWGAKKAGLDkNLEFIKGDFMdlNGTFEENTFDKVYAIEATCHA 202
                 45667778889**********************9987..567*********************999********6423799999999988765554444 PP

                 -......HHHHHTEEEEE CS
        PCMT 156 P......ealidQLkeGG 167
                 P      +++ + Lk+GG
  CCD23766.1 203 PnlekcyKEIYKVLKPGG 220
                 411122235556666666 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.3   3.1e+03     160     175 ..      49      64 ..      44      74 .. 0.74
   2 !   16.1   0.2   4.9e-06    0.0046      79     173 ..     147     242 ..     108     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.3
                     GGGGGG-SS--SHHHH CS
  Methyltransf_3 160 WeGkvveeddeeakal 175
                     W+G v ++d+e++++ 
      CCD23766.1  49 WKGGVYDQDQEQERLE 64 
                     9999999988776654 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.9e-06
                     ES-HHHHHHHHHHH..HHTT-GGGEEEEES-HHHHHHHHHTSSS---EEEEE.E-S..-GGGHHHHHHHHHHTEEEEEEEEEE-TTGGGGGG-SS CS
  Methyltransf_3  79 didreayeialkfi..qkagvaekieliegdalkvLeelvkdkklpefDfif.vDa..DkssyvnyyeklleLvkvGgliaiDntLWeGkvveed 168
                       +++ y+ia+  +  +kag+++ +e+i+gd +     + ++     fD ++ ++a     +  + y+++ +++k Gg+ a+   + + k  e++
      CCD23766.1 147 GLNNNDYQIAKAKWgaKKAGLDKNLEFIKGDFMDLNGTFEENT----FDKVYaIEAtcHAPNLEKCYKEIYKVLKPGGVFAVYEWVMTDKFDENN 237
                     56889999999887669**************988655555555....77776445511567999****************987776666665554 PP

                     --SHH CS
  Methyltransf_3 169 deeak 173
                     +e++k
      CCD23766.1 238 EEHQK 242
                     44433 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-05     0.014      24      94 ..     118     183 ..     101     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
  Methyltransf_32  24 sgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeats 94 
                      +++  v+DvG+G g  ++ +a      ++++vg++ ++  ++ka+  a+k g  ++k+l+f++++  + + 
       CCD23766.1 118 KKQDLVLDVGCGVGGPAREIAN---FTGCHIVGLNNNDYQIAKAKWGAKKAG--LDKNLEFIKGDFMDLNG 183
                      5667899***********9999...88*************************..*********99877664 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.9e-05     0.018     159     271 ..     117     238 ..     102     249 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-05
        PrmA 159 vkegeevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkveaklevalseellk......eekadviv...aNILaevlielaedikk 248
                 +k+++ vlDvG+G G  a   a +   ++v++  ++  +  ak  a++ +++++le  ++++ ++      e+++d +    a   a  l + +++i+k
  CCD23766.1 117 IKKQDLVLDVGCGVGGPAREIANFTGCHIVGLNNNDYQIAKAKWGAKKAGLDKNLEF-IKGDFMDlngtfeENTFDKVYaieATCHAPNLEKCYKEIYK 214
                 78999*************************************************997.4455552223333677776551126889999********** PP

        PrmA 249 lvkeggllil.SGilkekaeevae 271
                 ++k+gg++++   ++ +k +e  e
  CCD23766.1 215 VLKPGGVFAVyEWVMTDKFDENNE 238
                 ******996514566666665555 PP

>> Methyltransf_24  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.2e-05      0.02      36     102 ..     156     223 ..      95     225 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.2e-05
  Methyltransf_24  36 eeaaalareaglddrvrlikadseealaslaagsiD.llfiDgghaaeavledleallprlapggvvl 102
                      ++a+  a++agld+++++ik+d+ ++ +++++ ++D ++ i +   a    + ++ + ++l+pggv+ 
       CCD23766.1 156 AKAKWGAKKAGLDKNLEFIKGDFMDLNGTFEENTFDkVYAIEATCHAPNLEKCYKEIYKVLKPGGVFA 223
                      344555677***************************77779**9999******************986 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.8e-05     0.083       2      77 ..     120     194 ..     119     196 .. 0.90
   2 ?   -1.8   0.0       1.9   1.8e+03     100     115 ..     209     224 ..     206     245 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.8e-05
                     -EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHCTT.SSEEEEES-CCCHHHHCS-TTSEEEEE CS
  Methyltransf_4   2 apvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkiealel.kNlrilrgdalkvllelledgslekif 77 
                     + +vl++GcG G+   ++A+ +  + ++G++ +   +ak+   +++ +l kNl+ ++gd    l+  +e+++++k++
      CCD23766.1 120 QDLVLDVGCGVGGPAREIAN-FTGCHIVGLNNNDYQIAKAKWGAKKAGLdKNLEFIKGDF-MDLNGTFEENTFDKVY 194
                     6789**************95.789****************99999998758********7.66899********997 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.9
                     HHHHHHHEEEEEEEEE CS
  Methyltransf_4 100 lkelarvLkkgGvlel 115
                      ke+ +vLk+gGv+ +
      CCD23766.1 209 YKEIYKVLKPGGVFAV 224
                     6789999999999864 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0     8e-05     0.076      10      83 ..     116     197 ..     107     218 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8e-05
        MetW  10 likpgsrvldlGcGdGellellkeekqvdgrGleldeegvaec........vakGlsviqgdldkdlenfedksfdyvvlsq 83 
                  ik++  vld+GcG G   + +++  + +  Gl++++  +a++        + k l+ i+gd  +   +fe+++fd v    
  CCD23766.1 116 GIKKQDLVLDVGCGVGGPAREIANFTGCHIVGLNNNDYQIAKAkwgakkagLDKNLEFIKGDFMDLNGTFEENTFDKVYAIE 197
                 5899999*****************************9999875333333336788999999998777899999999886544 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.8   1.7e+03      20      41 ..     111     132 ..      99     140 .. 0.84
   2 ?   10.9   0.0   0.00028      0.26      75     123 ..     141     191 ..     112     218 .. 0.81
   3 ?   -1.0   0.0       1.2   1.2e+03      64     109 ..     214     279 ..     193     284 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.8
                 HHHHTT--TTS-EEETT-TTSH CS
     UPF0020  20 lvrlagwkpgepllDPmCGsGt 41 
                 l ++ag+k+++  lD  CG G+
  CCD23766.1 111 LAYMAGIKKQDLVLDVGCGVGG 132
                 67899**************997 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00028
                 HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--..STTS--- CS
     UPF0020  75 aelklygsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevd 123
                 +  +++g++++   +++a+  a+kag+++  ef + d+ +L+   +e+ +d
  CCD23766.1 141 TGCHIVGLNNNDYQIAKAKWGAKKAGLDKNLEFIKGDFMDLNgtFEENTFD 191
                 44569************************************9553333455 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.2
                 S..............HHHHHHHHHH....HH--EEEEES-HHH..HHHHHHHHHHTT-GGGEEEEE CS
     UPF0020  64 e..............lkaeaeeear....aelklygsDldrrv..vqgareNaekagvgdliefsq 109
                 +              + ++  e+++     ++++   D ++++  v+ ar+ ++++g + l++   
  CCD23766.1 214 KvlkpggvfavyewvMTDKFDENNEehqkIRYEIELGDGIPKMfsVDVARDALKNCGFDVLVDKDL 279
                 234444555555555223333333322125555777788888755788999999998888877655 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00011      0.11      31      91 ..     119     180 ..     109     195 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00011
                 TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC..EEEEE-STTT CS
         MTS  31 lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle..vevvasdvle 91 
                 +++ vlD+GcG+G  + ++a+++   +++ ++++ + ++ ak  +++ +l+  +e+++ d ++
  CCD23766.1 119 KQDLVLDVGCGVGGPAREIANFTGC-HIVGLNNNDYQIAKAKWGAKKAGLDknLEFIKGDFMD 180
                 34569****************8887.78888999999999**999999999888888877654 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.37   3.5e+02      71     105 ..     118     152 ..     108     160 .. 0.78
   2 ?    8.5   0.0    0.0018       1.7     135     159 ..     203     227 ..     186     265 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.37
                     -TTS-EEEES-TT-HHHHH--S-..EEEEESS-SS CS
  Methyltransf_8  71 kdnlvvadlGcGeakiaeavrekekvrsfdlvavn 105
                     k++  v d+GcG    a ++ +++  + + l   +
      CCD23766.1 118 KKQDLVLDVGCGVGGPAREIANFTGCHIVGLNNND 152
                     5677899*****99988888888777777766655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0018
                     S-HHHHHHHHHHHEEEEEEEEEEEE CS
  Methyltransf_8 135 tnladflkeanrvlkvGGllkvaev 159
                      nl++  ke+++vlk+GG++ v e 
      CCD23766.1 203 PNLEKCYKEIYKVLKPGGVFAVYEW 227
                     5899999*************99883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2831.23
//
Query:       CCD23767.1  [L=637]
Description: hypothetical protein NDAI_0C01060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-12   46.0  25.1    5.8e-12   46.0  25.1    5.5  4  PAP1      Transcription factor PAP1
    5.4e-06   26.4  14.9      2e-05   24.6  14.8    2.1  1  bZIP_1    bZIP transcription factor
  ------ inclusion threshold ------
      0.013   15.6  14.9      0.041   14.0  14.6    2.2  1  bZIP_2    Basic region leucine zipper


Domain annotation for each model (and alignments):
>> PAP1  Transcription factor PAP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.3  15.2         3   1.8e+04      31     108 ..      19      97 ..       5     126 .. 0.37
   2 ?   -4.2  11.0       1.8   1.1e+04      82     152 ..     147     208 ..     129     227 .. 0.46
   3 ?   -1.2  31.3      0.21   1.3e+03      32     221 ..     162     358 ..     152     375 .. 0.55
   4 !   46.0  25.1   9.8e-16   5.8e-12     283     370 ..     546     633 ..     355     634 .. 0.79

  Alignments for each domain:
  == domain 1  score: -6.3 bits;  conditional E-value: 3
        PAP1  31 slskakknkakegesaaas.keesaaPstsaststtssvesasasssesknqrsnslealtkednnnys.nsaanegltr 108
                 + +++++ +++++++++ + ++e+a+ ++ +++   ++++ +++s+ +sk+++  + ea +k++ +n   + a+ e+  r
  CCD23767.1  19 QQQQQQQFETQNANNTRPKdSTENATTNPMKKQ-DLDNKTNTEQSNGNSKKKQLLDPEARNKRTAQNRAaQRAFRERKER 97 
                 222222222222222222211222222222222.2222222333333443333333344333333333312222222222 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 1.8
        PAP1  82 rsnslealtkednnnys.nsaanegltrgstassaesqsstysansgtstssdSPsssseshqgqlSScgTS 152
                 + n +++ + ++n   + ns++++  +++s+  +++ + s+ + ns t ts d Ps s++          TS
  CCD23767.1 147 VLNYISNSNSNSNPDLNlNSKFSPMESDASAMKRSTGSVSSGDSNSRTMTSMDAPSMSTT----------TS 208
                 222222222222222233444444444444444444444444445555555555555544..........33 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.21
        PAP1  32 lskakknkakegesaaaskeesaaPstsaststtssvesasasssesknqrsnslealtkednnnysnsaanegltrgsta.ssaesqsstysansgts 129
                 l+ ++k ++ e+ ++a ++++ ++ s +++++t +s+++ s s+++s + +  +l+  ++ + n        +++t +st+   a+ +s+ ++   ++ 
  CCD23767.1 162 LNLNSKFSPMESDASAMKRSTGSVSSGDSNSRTMTSMDAPSMSTTTSVQSNPLNLKPHNNMTLNDIL----PPATTVASTStLDANPSSTLFDSLLAN- 255
                 4556666667777777777777777888888888888888888877776444444444444444443....333333333312222222222211111. PP

        PAP1 130 ts......sdSPsssseshqgqlSScgTSPEP.....stqSPaakksketsstieeeevahttidge.ksfcekLglacgniknPiPaalskseslskt 216
                  +        S ++ ++++++++ S+ T           q P+ +++ e+s+ i++    + + d + ++fc k+++acg+ +nPiP+ +s+ ++  ++
  CCD23767.1 256 -DdlftqqLMSFANNANNNNNNNDSVTTLDNSntqqqNLQQPQITPPIEDSNLISNSFDFNDKFDEQvSDFCGKMSMACGTRSNPIPKSKSNVSTPQSI 353
                 .111222334444444444444555555444300000445677777888888898876666666655268******************98876544444 PP

        PAP1 217 pseas 221
                  ++++
  CCD23767.1 354 MNSNN 358
                 44443 PP

  == domain 4  score: 46.0 bits;  conditional E-value: 9.8e-16
        PAP1 283 qkqkatppkkdlieeidekld...eddevvpgedksqmltCtkiWdrlqsmekfrngeiDvDsLCseLrtKArCSegGvVvnqkdvedilk 370
                 ++++++++k++ ++   ++++    dd +vp+ d    l C++iWdr+ + +k+   e+D+D LCseL tKA+CSe GvVvn +dv+ +l 
  CCD23767.1 546 NEEPSSTNKNNNLTSTSKEQEnndFDDFIVPSRD-GGLLRCSEIWDRITAHPKY--SELDIDGLCSELMTKAKCSERGVVVNAEDVQMALT 633
                 3333335677666665544442326889999996.679**************98..69****************************99886 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6  14.8   3.3e-09     2e-05       6      48 ..      77     119 ..      74     142 .. 0.78

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.3e-09
                 XXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   6 rekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkse 48 
                 r kr ++NR a+r++R+RK+ +++eLe++v+ L+k  k+   e
  CCD23767.1  77 RNKRTAQNRAAQRAFRERKERKMKELEEKVANLTKIQKQNEIE 119
                 89******************************99865543333 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0  14.6   6.9e-06     0.041       2      39 ..      73     111 ..      72     133 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.9e-06
                 XXXXXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   2 ddeyrerRr.kNreAarrsRekkkakeeeleervkeLee 39 
                 d+e+r +R  +Nr+A r +Re+k  k++elee+v +L++
  CCD23767.1  73 DPEARNKRTaQNRAAQRAFRERKERKMKELEEKVANLTK 111
                 7899*********************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2880  (0.160634); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.35s 00:00:01.33 Elapsed: 00:00:00.51
# Mc/sec: 3791.29
//
Query:       CCD23768.1  [L=757]
Description: hypothetical protein NDAI_0C01070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1376  (0.0767472); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5196.62
//
Query:       CCD23769.1  [L=271]
Description: hypothetical protein NDAI_0C01080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2085.68
//
Query:       CCD23770.1  [L=165]
Description: hypothetical protein NDAI_0C01090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-21   76.0   1.4    1.9e-21   75.6   0.3    1.7  2  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
    9.8e-17   61.2   1.3    1.9e-16   60.3   0.2    1.8  2  Ribosomal_L11    Ribosomal protein L11, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.3   2.2e-25   1.9e-21       3      65 .]       5      69 ..       3      69 .. 0.94
   2 ?   -1.9   0.0      0.35   3.2e+03      35      48 ..     119     132 ..     113     136 .. 0.72

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 2.2e-25
  Ribosomal_L11_N  3 k...vvkvvklrvpaGkAtpaPplGpaLGplGlnikkfckefnkaTkdkkglripVkitvyqdrsf 65
                     +   +vk+++lr  +G+++++ +l+p++GplGl++kk++++++kaTkd+kg++++V++ + q+r++
       CCD23770.1  5 FdptEVKYLYLRAVGGEVGASAALAPKIGPLGLSPKKVGEDIAKATKDFKGIKVTVQLKI-QNRQA 69
                     555599******************************************************.***96 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.35
  Ribosomal_L11_N  35 kkfckefnkaTkdk 48 
                      k f+k  +  Tk+ 
       CCD23770.1 119 KSFGKNLASVTKEI 132
                      67888888888775 PP

>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       0.2   1.8e+03       5      41 ..      10      49 ..       7      61 .. 0.62
   2 !   60.3   0.2   2.1e-20   1.9e-16       2      70 .]      74     143 ..      73     143 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.2
                   HHHHHHHHHTXSSXXSSTTTSXXEE..EEHHHHHH.HHHH CS
  Ribosomal_L11  5 tsylLkkaagiekgsgkpgketvGt..vslkqvye.IAki 41
                   + yl ++a+g e g++     ++G   +s k+v e IAk+
     CCD23770.1 10 VKYLYLRAVGGEVGASAALAPKIGPlgLSPKKVGEdIAKA 49
                   5677788888888877766666655334444543325555 PP

  == domain 2  score: 60.3 bits;  conditional E-value: 2.1e-20
                    --SHHHHHHHHHTXSSXXSSTTTSXX..EEEEHHHHHHHHHHHGGGHTXS.SHHHHHHHHHHHHCTTTEEE CS
  Ribosomal_L11   2 tPptsylLkkaagiekgsgkpgketv..GtvslkqvyeIAkiKksdlnaalsleaavksilgtArsmGikV 70 
                    +P++s+l++ a++++++++k+ k++   G+++l++++eIAk+++ +++ +++l +++k+ilgtA+s+G+ V
     CCD23770.1  74 VPSASSLVITALKEPPRDRKKDKNIKhsGNLQLDDIIEIAKQMQ-EKSFGKNLASVTKEILGTAQSIGCRV 143
                    7*******************99984477****************.7776779*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.28s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1185.11
//
Query:       CCD23771.1  [L=769]
Description: hypothetical protein NDAI_0C01100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-43  148.7   0.2    1.1e-43  148.7   0.2    2.1  2  Mak10     Mak10 subunit, NatC N(alpha)-terminal acetyltransfe
  ------ inclusion threshold ------
      0.017   15.4   0.2        1.1    9.7   0.0    2.8  2  HTH_57    ThcOx helix turn helix domain
      0.022   15.3   0.8      0.056   13.9   0.8    1.7  1  DUF3019   Protein of unknown function (DUF3019)


Domain annotation for each model (and alignments):
>> Mak10  Mak10 subunit, NatC N(alpha)-terminal acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   0.2   1.8e-47   1.1e-43       2     167 ..      43     209 ..      42     210 .. 0.96
   2 ?   -1.6   0.2      0.27   1.6e+03      56      91 ..     399     434 ..     389     484 .. 0.73

  Alignments for each domain:
  == domain 1  score: 148.7 bits;  conditional E-value: 1.8e-47
       Mak10   2 gqlvkdesFtLfeavsAleimdpkmDsgliapeleeeeedfdvsapll.........peevlgimdrllasemaWhsg.ssLsqTvftclYveklllps 90 
                 ++++kd++F+Lfe++++le+++pk+Ds+li  +l++ee++fd++ +++         +++v++i +rll+ + +W+++ ++L++T+++c+Yve++l ++
  CCD23771.1  43 KTIIKDPNFDLFEGTHSLEVNNPKLDSSLI--KLTTEEYKFDCNIAYGsteetqndaLNYVTAITERLLRLVLCWLNNyQTLPTTILSCRYVENFLVKC 139
                 689***************************..999*******************************************9******************99 PP

       Mak10  91 pkalkeakfsrkedeekektelelvdkvLrayvlalvkfcdlvleelskevlyeeEDfvtnkyglslleeieveevi 167
                 ++++ ++        +  kt++ ++dkvL+++v+++++f +++++ l+++v++eeED+++n +gl  + +++ +++i
  CCD23771.1 140 SNETFNDI-------HVLKTNNVIYDKVLNSCVIGICYFAKFAQDLLKSGVIFEEEDMNFNIMGLGSFVGLPDQQII 209
                 99866665.......5789999**************************************************99986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.27
       Mak10  56 imdrllasemaWhsgssLsqTvftclYveklllpsp 91 
                 i++++l+  ++W+++ss  +  +   Y  +ll  ++
  CCD23771.1 399 ILQECLSVLFEWYQNSSQNTCRYRQGYNRQLLVWDS 434
                 888999999999999987777777777766665444 PP

>> HTH_57  ThcOx helix turn helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00018       1.1      61      95 ..     322     356 ..     311     358 .. 0.88
   2 ?    2.4   0.0     0.031   1.8e+02       9      58 ..     535     585 ..     531     591 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00018
                 HHHHHH-HHHHHHHHHHHHHHHHTT-EEEEETTTE CS
      HTH_57  61 lvlekdgvealekFeayLqkLielGwlcysvLPLa 95 
                  v++++ + +  +F++y +kL ++ +++ +++PL 
  CCD23771.1 322 KVAKSENFIEILQFATYFNKLHQRHVIARAIFPLF 356
                 6888999999***********************95 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.031
                 E-TT-EEEE-SSEEEEE.-SS-EEEEES--HHHHHH.HHHHHHT-B-HHHH CS
      HTH_57   9 lkkdvqvieeedklilqsspdaslklaapspgikaA.leqLkagnaTeekL 58 
                 ++k++++++ e+k  l ++ +++l+++ p+  ++ A l+ L + n+ +e+L
  CCD23771.1 535 MNKKLKIESWEEKGKLRTQYHNALDIDLPQFEMNIAfLNYLSKRNKINESL 585
                 799**************9************999988468899999888887 PP

>> DUF3019  Protein of unknown function (DUF3019)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.8   9.4e-06     0.056      19      77 ..     404     462 ..     399     482 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.4e-06
     DUF3019  19 vevelswqaekaqevClysekeeeplkCwesakegeltleleaekdlefelrdeeenkt 77 
                  +v ++w++++ q++C y+++ +++l  w+s + +  +++ ++ ++l++++ + ++n +
  CCD23771.1 404 LSVLFEWYQNSSQNTCRYRQGYNRQLLVWDSVQAQLENMHSQLLSNLQLQVTNGQDNSQ 462
                 4689******************************9999999999999999998554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       935  (0.0521501); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5434.74
//
Query:       CCD23772.1  [L=549]
Description: hypothetical protein NDAI_0C01110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-78  261.7   0.0      2e-55  188.1   0.0    3.1  3  AFG1_ATPase   AFG1-like ATPase
     0.0001   22.7   0.0    0.00031   21.2   0.0    1.8  2  AAA           ATPase family associated with various cellular 
    0.00025   21.0   0.0    0.00062   19.8   0.0    1.7  1  ATPase_2      ATPase domain predominantly from Archaea
    0.00046   20.6   0.1      0.028   14.8   0.1    2.5  1  AAA_16        AAA ATPase domain
  ------ inclusion threshold ------
      0.044   14.1   0.1       0.18   12.1   0.0    2.2  2  AAA_22        AAA domain
      0.052   13.6   0.0       0.27   11.3   0.0    2.2  2  AAA_5         AAA domain (dynein-related subfamily)
      0.052   13.4   0.1      0.094   12.5   0.1    1.5  1  Bac_DnaA      Bacterial dnaA  protein
      0.053   13.9   0.0       0.13   12.6   0.0    1.8  1  RNA_helicase  RNA helicase
      0.067   13.2   0.0       0.13   12.2   0.0    1.5  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.62   10.8   5.2       0.99   10.1   0.1    2.7  2  DUF573        Protein of unknown function, DUF573


Domain annotation for each model (and alignments):
>> AFG1_ATPase  AFG1-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.1   0.0   1.1e-58     2e-55       2     241 ..      84     351 ..      83     370 .. 0.86
   2 !   59.2   0.0   1.7e-19   3.1e-16     226     333 ..     365     473 ..     350     489 .. 0.83
   3 !   11.3   0.0   6.5e-05      0.12     330     361 ..     518     549 .]     494     549 .] 0.82

  Alignments for each domain:
  == domain 1  score: 188.1 bits;  conditional E-value: 1.1e-58
  AFG1_ATPase   2 tprqryekelqrgeivadaaqaeavealdrlteelaaqdlarks................salgklfgrkrksvepvrglYlwGgvGrGKtylmdlff 83 
                  tp + y++ ++ +  + d+ q ++++ l++l+e+l+  + +  s                +++++  + k +++  ++g+Yl+G vG GKt+lmdlf+
   CCD23772.1  84 TPIEEYDRLVRINRLRDDPHQRSIISSLSNLYESLKYYTPPSSSrstsmskltdikrkflNIFNQNKATKVNETDVPVGIYLYGDVGCGKTMLMDLFY 181
                  78899****************************98888887777778888888777433333333334455667889********************* PP

  AFG1_ATPase  84 eslpve.kkrrvhfhafmarvhdeltklr........kekdplaivadrlaeearvlCfDEfevsDiadamllsrLleaLf...argvtlvaTSNiaP 169
                  + +p +  k+r+hfh+fm+ vh++ ++          k +d+++i a+++ + +++lCfDEf+v+D+adam+l rLl  L+   + g++l aTSN+ P
   CCD23772.1 182 STIPSHlSKKRIHFHQFMQYVHKRSHEIIkehhlddkKDVDSIPILANEISQISNILCFDEFQVTDVADAMILRRLLTLLLspdKHGIVLFATSNRSP 279
                  ****87479**********999875544445569998999****************************************955569************ PP

  AFG1_ATPase 170 edLykdglqrqrFLpaIdlleshlevlevdggvDYRlrklrqaevylapldeaaeaaldklfkeltsgepea 241
                  ++Ly +g+qr+ F+p I+l++ +++v+ +d++vDYR    +   vy++p++e+  +  +k f+e+ +++ ++
   CCD23772.1 280 DELYINGVQRESFIPCIELIKDRTKVILLDSEVDYRKIPRPMSSVYTYPTKESGLKWDSKEFNEIKRAHIKE 351
                  **************************************************9998888888888887766555 PP

  == domain 2  score: 59.2 bits;  conditional E-value: 1.7e-19
  AFG1_ATPase 226 aldklfkeltsgepeaestlevkaRklrvraaa.gdlvrfsfaelceaarsqsdYlalaerfhtvlledVpvltkakedaarRfiaLvDelYdadvkl 322
                    d+  k   ++e+ ++ +l++ +R+ +v+      +++f+f+elc ++ ++ dYlala+ f++++++d+p lt +++d+ rRfi+ +D++Yd++ kl
   CCD23772.1 365 RKDRRQKGDNNAEKFKDYSLTIWGREFKVPLCSpPRVAQFTFKELCGQPLAAGDYLALANNFQAFIITDIPYLTIMMRDEVRRFITFLDAVYDNGCKL 462
                  5555555555688889999**********987626899***********************************************************9 PP

  AFG1_ATPase 323 vvsaevaleel 333
                         ++ l
   CCD23772.1 463 ATTGANDFTSL 473
                  87755555555 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 6.5e-05
  AFG1_ATPase 330 leelyeagrlefefeRtaSRLlelqsedylar 361
                   + ++ +++ +f f R++SRL ++ s d++++
   CCD23772.1 518 KSHIFAKDEERFAFARALSRLSHMSSTDWVTK 549
                  4567778889*******************975 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.6   6.5e+03      64      98 ..      86     120 ..      86     148 .. 0.77
   2 !   21.2   0.0   1.8e-07   0.00031       1     115 [.     163     282 ..     163     292 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.6
                 EETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA  64 iDEidalaksrsgseseeeervvnqLlteldgvkk 98 
                 i+E d+l++ ++ +++ +++++++ L +  + +k 
  CCD23772.1  86 IEEYDRLVRINRLRDDPHQRSIISSLSNLYESLKY 120
                 67889998888777777888888888777776655 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 1.8e-07
                 EEEESSTTSSHHHHHHHHHHHH.........T....HEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel.........g....vefleisgsellskyvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeerv 85 
                 ++lyG  G+GKT+l+    +++         +    ++++    +e+++++  + +k++  +   a e ++   il +DE+     +        +  +
  CCD23772.1 163 IYLYGDVGCGKTMLMDLFYSTIpshlskkriHfhqfMQYVHKRSHEIIKEHHLDDKKDVDSIPILANEISQIsNILCFDEFQVTDVA--------DAMI 253
                 68*******************744333332212233557888888888888888888888888888777744588888888877555........499* PP

                 HHHHHHHHHHTTTSSSTEEEEEEESS.GGGS CS
         AAA  86 vnqLlteldgvkkkeskvivigatnr.pdkl 115
                 +  Llt l   +k  + +++ +++nr pd+l
  CCD23772.1 254 LRRLLTLLLSPDK--HGIVLFATSNRsPDEL 282
                 **********999..57999*****988876 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.4e-07   0.00062      21     103 ..     161     243 ..     149     273 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 3.4e-07
    ATPase_2  21 eiyfiYGpegsGKtaLlkeiienl.edkdkyviyyialreesiskldefieeeeekkklekalgiavpkaeleeilkeksklvf 103
                   +++YG  g+GKt L+  +++   ++++k++i + ++ ++  ++  e i+e++ ++k +++ +i++  +e+ +i++    + f
  CCD23772.1 161 VGIYLYGDVGCGKTMLMDLFYSTIpSHLSKKRIHFHQFMQYVHKRSHEIIKEHHLDDK-KDVDSIPILANEISQISNILCFDEF 243
                 45899******************9999**********************998777774.4444588888888877765555533 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.6e-05     0.028      24      83 ..     160     211 ..     148     272 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.6e-05
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy.sa.laqalareellr 83 
                 p  ++l+G+ G+GK+ l++ ++  +  +    l+ k  ++++ + y      +++      +
  CCD23772.1 160 PVGIYLYGDVGCGKTMLMDLFYSTIPSH----LSKKRIHFHQFMQYvHKrSHEII------K 211
                 47899*****************988888....77777777444444211233333......2 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       3.1   5.6e+03      44      62 ..     120     144 ..      95     155 .. 0.58
   2 ?   12.1   0.0    0.0001      0.18       8      36 ..     163     191 ..     162     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.1
      AAA_22  44 fvtlpsst......sskdllrellr 62 
                 ++t+pss+      +++d+ r++l+
  CCD23772.1 120 YYTPPSSSrstsmsKLTDIKRKFLN 144
                 6777777655333344444444444 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.0001
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakae 36 
                 ++++G +G+GKT+l+  + ++ + + + +
  CCD23772.1 163 IYLYGDVGCGKTMLMDLFYSTIPSHLSKK 191
                 799*************9999887665544 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.4   4.3e+03      79     123 ..     105     151 ..     101     158 .. 0.63
   2 ?   11.3   0.0   0.00015      0.27       2      78 ..     163     247 ..     162     266 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHSSEEE..-SSSEEE---........-EEEEEESS- CS
       AAA_5  79 sevlnsLlslleerrllleeggelvkakndd.ller.frviatanpl 123
                 +++++sL +l e  +++++++  +    ++   ++r f  i+  n++
  CCD23772.1 105 RSIISSLSNLYESLKYYTPPSSSRSTSMSKLtDIKRkFLNIFNQNKA 151
                 78899999999988888887776665555443333346555555555 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00015
                 EEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--H.....HHHH--B--.........--------.G-SEEEEESGGG-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..nreveyvqltrdtte.....edlkgrreikngttslvdsplvraar.egeilvlDEverae 78 
                 + L G+ G+gK++l++ + + +    +   + +++++++      +++ + ++++++ + +  +l +++   + il++DE++  +
  CCD23772.1 163 IYLYGDVGCGKTMLMDLFYSTIpsHLSKKRIHFHQFMQYvhkrsHEIIKEHHLDDKKDVDSIPILANEISqISNILCFDEFQVTD 247
                 5699******************995555556666666431112268888888854444444344444443699999999987443 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   5.3e-05     0.094      37      95 ..     163     221 ..     143     284 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.3e-05
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHHHHHHHHHHHTT-HHHHHHHH CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeFlnelvkalrdkkaeefkekl 95 
                 +++yg+vG Gkt L++    ++ ++ +++r+ + +  +++++  + + +++  + k+ +
  CCD23772.1 163 IYLYGDVGCGKTMLMDLFYSTIPSHLSKKRIHFHQFMQYVHKRSHEIIKEHHLDDKKDV 221
                 699****************************9998888887765554444444444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.5e-05      0.13       1      28 [.     163     190 ..     163     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.5e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklkl 28 
                   i+lyG+ g+GK++l++ + +++ ++l +
    CCD23772.1 163 IYLYGDVGCGKTMLMDLFYSTIPSHLSK 190
                   89****************9999988822 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.4e-05      0.13      21      42 ..     154     183 ..     130     217 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.4e-05
                 E........EEEEESTTSSHHHHHHHHHHH CS
        TsaE  21 v........ilLeGdLGaGKTtlvrglaka 42 
                 v        i+L+Gd+G+GKT+l+  + ++
  CCD23772.1 154 VnetdvpvgIYLYGDVGCGKTMLMDLFYST 183
                 133344777**************9877665 PP

>> DUF573  Protein of unknown function, DUF573
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00055      0.99      27      74 ..     106     153 ..      87     161 .. 0.79
   2 ?    1.4   1.3       0.3   5.3e+02      31      95 .]     320     388 ..     303     388 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00055
      DUF573  27 spksdldafyeavksslssdvsksqlseKlrrLkkkyrnavskikkgk 74 
                 s  s+l+++ye++k  +  + s s  ++Kl  +k+k+ n+ ++ k++k
  CCD23772.1 106 SIISSLSNLYESLKYYTPPSSSRSTSMSKLTDIKRKFLNIFNQNKATK 153
                 333899**********************************99865444 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.3
      DUF573  31 dldafyeavksslssdvsksqlse.KlrrLkkkyrnavskik..kgkdpsfkkphdrklf.elskkiWg 95 
                  ++++y +  ++   ++  +++ e K  ++k++y+  ++  +  k+kd   k +++ + f + s +iWg
  CCD23772.1 320 PMSSVYTYPTKESGLKWDSKEFNEiKRAHIKEWYDYFAQDRRhqKRKDRRQKGDNNAEKFkDYSLTIWG 388
                 567777777777777888888877688899***999888766445555555555555555257888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       644  (0.0359195); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3803.36
//
Query:       CCD23773.1  [L=390]
Description: hypothetical protein NDAI_0C01120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-52  175.1   2.8    1.3e-51  174.0   2.8    1.6  1  Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
    1.2e-22   79.6   0.2    4.2e-22   77.9   0.1    2.0  2  Ribosomal_L2    Ribosomal Proteins L2, RNA binding domain
  ------ inclusion threshold ------
       0.24   11.0   2.5       0.35   10.5   2.5    1.2  1  EMC1_C          ER membrane protein complex subunit 1, C-term


Domain annotation for each model (and alignments):
>> Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.0   2.8   2.3e-55   1.3e-51       2     126 .]     235     361 ..     234     361 .. 0.98

  Alignments for each domain:
  == domain 1  score: 174.0 bits;  conditional E-value: 2.3e-55
                     SSS-EBSSSS-TTB-BBSE-SSTTS--SSS-SSSB-EEBB-B...SSEEEEEETTS-EEEEETTSBEBES-BS-TTCTT----STTHHHHTTBS- CS
  Ribosomal_L2_C   2 vGnvlplknipeGtivhnielkpgkggklarsaGtyaqvvak..egkkvtvklpSgevrkvssecrAtiGvvsngehkekklgkAgrkrwlgrrp 94 
                     +Gn+lp+++ip+G+++hn+ ++p   +k++r+aGtya++++k  ++kk++v+l+Sge r+vs +++At+G+vsn +h++++lgkAgr+r lgrrp
      CCD23773.1 235 RGNCLPISMIPIGSVIHNVGITPVGPAKFCRAAGTYARLISKlnDKKKAIVRLQSGEHRYVSIDACATMGIVSNVDHQNRSLGKAGRSRNLGRRP 329
                     7****************************************98669************************************************* PP

                     ---SSSS-TTTSSS--SSSS--SSSSTEETTC CS
  Ribosomal_L2_C  95 kvrGvamnpvdHphGGGeGktksrkapvspwg 126
                     +vrGvamn++dHphGGG+Gk+ks+k ++spwg
      CCD23773.1 330 HVRGVAMNKCDHPHGGGRGKSKSNKLSMSPWG 361
                     *******************************8 PP

>> Ribosomal_L2  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.1     7e-26   4.2e-22       1      76 [.     128     205 ..     128     206 .. 0.91
   2 ?   -2.4   0.0      0.81   4.9e+03      51      63 ..     283     295 ..     281     304 .. 0.77

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 7e-26
                   TB-TT--BSSTT--------EE-B--S---SS--EEEEEEE--TT-SS-EEEEEETTTEEE...EEE--SS--SS-EE- CS
  Ribosomal_L2   1 GrnnsgritvrhrggGhkkkyrlidfkrnkekvkgkVveieyDpgRsApiAlvkyedgekr...yiiapeglkvGdtvv 76 
                   Grnn+g+itvrhrggGhk+++r +d+ r +++ ++ V++ie Dp+RsA+iAl++  + +++   y++a++gl+ Gd++ 
    CCD23773.1 128 GRNNQGKITVRHRGGGHKRRIRTLDYFR-WDSNPQLVKRIEFDPNRSAHIALLESTNEKEKtlsYVVATDGLRKGDIIQ 205
                   9*************************99.577789*********************94444466************995 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.81
                   EEEEETTTEEEEE CS
  Ribosomal_L2  51 Alvkyedgekryi 63 
                   A v +++ge ry+
    CCD23773.1 283 AIVRLQSGEHRYV 295
                   6788888888887 PP

>> EMC1_C  ER membrane protein complex subunit 1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.5   5.9e-05      0.35      54     133 ..      27     109 ..       5     139 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.9e-05
      EMC1_C  54 lsqsfifpegi...kalavttTkkgItskslllalesgqivslpr..rlldpRrpvrkptaaekeeglipYepllpidpksvish 133
                  ++s+ +++ +   ++ a+ttT+  I+ k l +++++  i+ l++  +l+ +Rr++ k+t + k  +    +p l   ++ + +h
  CCD23773.1  27 TKRSYSYSKTLlqqQQNATTTTTTPISAKILQIIPNNTDIATLEKqdELIKSRRKLLKQTIKIKSRKP--ISPGLRWFKTPIYTH 109
                 5566666654411145789999*******999*************999********555544433222..223444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2872.81
//
Query:       CCD23774.1  [L=732]
Description: hypothetical protein NDAI_0C01130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-175  585.6   4.6   1.4e-175  585.4   4.6    1.0  1  Carn_acyltransf  Choline/Carnitine o-acyltransferase
  ------ inclusion threshold ------
      0.058   13.0   7.7      0.042   13.5   5.0    2.1  2  SR-25            Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> Carn_acyltransf  Choline/Carnitine o-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  585.4   4.6  1.5e-179  1.4e-175       1     586 [.     103     712 ..     103     713 .. 0.92

  Alignments for each domain:
  == domain 1  score: 585.4 bits;  conditional E-value: 1.5e-179
                      S-------HHHHHHHHHHHHHCCS....HHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHSS.HT-STTTHHHHHHHHTTT--S-HHHHTBEEEE CS
  Carn_acyltransf   1 LprLPvPkLedTleryleslkpll....seeelekteklveeflkgeGpkLqerLraekek.ktsknwledwWedyaYleyrdplvlnsnpfll 89 
                      Lp+LP+P+L++T+++yl+s+kp++    ++ ++++++ l+++f ++ Gp Lq+rL++ +++ ++++nwl+++W+++aYley+dp+++++++f++
       CCD23774.1 103 LPSLPIPDLNSTISKYLNSIKPYCnndtKSIKFQNQKLLCNDFIENMGPLLQDRLIEFNNNgNNKRNWLSSFWDNTAYLEYNDPVIPYVSYFYV 196
                      8***********************987655699**********************88866677889***************************9 PP

                      -GCCCCT..STCHHHHHHHHHHHHHHHHHHHHHHTT-S--TE.EETEE---GGGGGSSSEEEE-.......-SSS-EEEEE--TSS---EEEEE CS
  Carn_acyltransf  90 leddpdp..keknqqlkraAklilsalkfkkllrreelepdvikkgkplcmsqykrlfnttRiP.......gkekDklvkykkedkesrhivVl 174
                      ++d + +  + +n+ l + +++i++++kf++++++++l+p++i k++p+cm++++++fn +R+P         ++D+   y+    e++ ++V+
       CCD23774.1 197 HKDLTMQnsRIQNDPLMKSTAIISTVIKFIESIKDQSLPPEII-KNNPFCMNSFQMMFNNSRLPdfnnnneLSNRDTNIFYSI--YENNFMIVM 287
                      98877767855666669************************88.589*****************9999988557888888876..359****** PP

                      ETTEEEEEECE.CECTTEE--HHHHHHHHHHHH.HHHHCCG...----GGGGGGS-HHHHHHHHHHHCC-TCHHHHHHHHHHCSS-EEEE---- CS
  Carn_acyltransf 175 rkgqfYkvdvl.eddggrllspaelekqleeIl.sdsekees..aeepvgvlTtenRdewakareellksekkNkeslelIesalfvvcLDdes 264
                      +kg+fYkv ++ + + +++ls++++ +ql++I  s+s+k+++  ++ ++g lT+ +Rd+w k+++el+k+ ++ kesle+I++a f+++LD ++
       CCD23774.1 288 YKGNFYKVFTHcQ-KTKKPLSDNKIWNQLYSITaSSSTKTTTshDGVGIGSLTSLPRDQWRKTYAELIKD-PNSKESLETIHKASFILALDLDQ 379
                      ***********65.777****************744444444789999********************85.569*****************999 PP

                      SS---HCCHHHHHHCTTCGC--TTBSEEEEE-TTS-EEEEE-STT--HHHHHHHHHHHHHCCHCTTTT--S...............----S-SS CS
  Carn_acyltransf 265 pededeeelakqllhgsgtnRWfDKslqlivtknGkaglnfEHswaDgtvvlrlvedvltdsilkeakekn...............eeksssse 343
                        + + ee +++ +hg+g nR++DK+lq++vt nG++g+ +EHs +Dgt++l l+++v++++ +k ++++                +++     
       CCD23774.1 380 K-PITLEENTRSSWHGDGINRFYDKPLQFFVTGNGSSGFLAEHSKMDGTPTLFLNTFVCQQL-NKLNQDEFlsqfslnpsssssssSSS----- 466
                      7.666669*****************************************************9.66666655899**9998776543222..... PP

                      S..........-EEE-----HHHHHHHHHHHHHHHHHHCCEEEEEEEETS--HHHHCCCT--HHHHHHHHHHHHHHHHHSS---EEEEEE-TTS CS
  Carn_acyltransf 344 es......lpepeklefkldeelkeaieeaetrldklisdldlkvlefkeyGksfikkfklspDafiQmalQlAyyrlygklaatyEsastrkF 431
                       s      lp+p +l f  +++++++i++a+++++++i++++l+v+++++yGk+fik++k+spDa+iQ+++QlA y+l gk+ +tyE+astrkF
       CCD23774.1 467 -SssssssLPPPSPLPFLKTPQIQSDIKSAQEQFQNQINQHKLRVWQYNKYGKNFIKSMKFSPDAYIQQIIQLALYKLLGKQLPTYEAASTRKF 559
                      .12345569************************************************************************************* PP

                      TT--EEEEE---HHHHHHHHHHHS.SCTHCCHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHT--HHSS.-HHHHSHHHHHCT--SE CS
  Carn_acyltransf 432 rhGRtEtirsvteeslafvkamds.kasdeeklellrkAvkahskltkeaakGkGvdrHLfaLkllakelesegeelpelFkdplykklnnwrL 524
                      ++GRtEt rsv++ s ++v ++++ + ++e++ +ll++ +  hs+++k+a++G+++drH+f+Lk ++k    ++e++p+lFkd+l++++++w +
       CCD23774.1 560 FKGRTETGRSVSSSSYELVTNWSKpHITNEQRCKLLTNSIMDHSNYLKMASEGMAIDRHFFGLKKMLK----TNETIPPLFKDELFNYSSTWLV 649
                      **********************7768899999********************************9999....6789****************** PP

                      EEEE...SSSEEEES--SSTT-EEEEEEEETC.EEEEEEETCTT..S--HHHHHHHHHHHHHHH CS
  Carn_acyltransf 525 sTSqlsspalkgfGfgpvvpdGyGigYiikddsisfvisskkks..etsserfaeaLeealedi 586
                      sTSqlss++++g+G+++v+++G+G++Y++++d+++++i + k++    + ++++ +L++a+++i
       CCD23774.1 650 STSQLSSEYFQGYGWSQVYDNGVGLAYMLNNDWLHINIVN-KPKiaGFDPDQLHYYLTQAADEI 712
                      ****************************************.56668789************998 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   5.0   4.6e-06     0.042      65      81 ..     457     473 ..     438     535 .. 0.62
   2 ?   -2.4   0.0      0.34   3.1e+03     145     159 ..     580     595 ..     552     605 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.6e-06
       SR-25  65 sssssssssssssssss 81 
                 sssssssssssssssss
  CCD23774.1 457 SSSSSSSSSSSSSSSSS 473
                 22222222222222222 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.34
       SR-25 145 e.dGPvltDeqksriq 159
                 + + P +t+eq+ ++ 
  CCD23774.1 580 NwSKPHITNEQRCKLL 595
                 3344666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1103  (0.0615204); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5382.80
//
Query:       CCD23775.1  [L=385]
Description: hypothetical protein NDAI_0C01140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-11   45.8   0.0    2.1e-11   45.0   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    2.6e-06   27.5   0.0    4.5e-06   26.7   0.0    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
     0.0019   18.0   0.0     0.0024   17.7   0.0    1.2  1  DUF2855       Protein of unknown function (DUF2855)
  ------ inclusion threshold ------
      0.032   13.8   0.0      0.052   13.1   0.0    1.3  1  LDcluster4    SLOG cluster4 family


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   4.6e-15   2.1e-11      14     133 .]     254     381 ..     227     381 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 4.6e-15
                   HHHHH-TT-EEEEEES-HHHHH.HHHHHHE..EEEEE.EEE----................S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHH CS
  ADH_zinc_N_2  14 feaatggegvDvvldtvggealleaslkvl..pggGr.lvsiggpp...............lsaallkpakkrkgrsvkyeflfsmkasaqadilee 92 
                   f   + g+++D+++d++g+ +++    ++l  + +   +v+  gp                lsa ++  +  +  r+++y+ +f  +++ +   ++ 
    CCD23775.1 254 F---I-GKKFDLIFDSAGTSEFYPVMDEFLkpRVENSyYVTAVGPRtpveytpkeilslysLSAPIRTYNP-W--RKFNYKGIF-GTPN-KSY-MDL 340
                   3...4.678*********9999899999997544344257777665789**99999997654444444433.4..889999999.6888.666.*** PP

                   HHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  93 laalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                    a++i+ G+  p +d+v+++e+  eA+++l+sg+a+GKiV+
    CCD23775.1 341 AARMISLGRYVPKIDSVYQFEKFEEAFDKLRSGKAKGKIVI 381
                   ****************************************7 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0     1e-09   4.5e-06       4      82 ..     197     282 ..     194     306 .. 0.90

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1e-09
                 HHHHHHHHHTT-..EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHT.....TTSSEEEEEESSCSHHHHHHHHHCEEEE CS
  ADH_zinc_N   4 laavqlAkalGa..eviavdsseeklelakklGadevinykea.dlverikelt.....ggegvdvvfecvGsgatleaalkllkpg 82 
                  + vq+Ak      +vi+++ss++  e+ ++ G d++i y+e   + + +++l       g+++d++f+ +G+ + ++   ++lkp+
  CCD23775.1 197 NCFVQIAKNQLHigTVIGICSSKS-MEQNQQVGFDYTIPYDEGeGFIANLRDLMktpefIGKKFDLIFDSAGTSEFYPVMDEFLKPR 282
                 688*****66656**********8.9**************99889*********99998578***************9999999986 PP

>> DUF2855  Protein of unknown function (DUF2855)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.3e-07    0.0024     139     256 ..     179     305 ..     140     376 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5.3e-07
     DUF2855 139 adlsgakvvvllsASsKTAlslayllrkrrkaeegplklvglTSaknrafveslglydkvvsYddlesleaa............kkv.vivDfagrdel 224
                  + +++ +v++++AS+  A ++ + ++++ +       ++g+ S+k+++  +++g+   ++ Yd+ e   a+            kk  +i+D ag +e+
  CCD23775.1 179 IWNKDS-MVLVFGASTSVANCFVQIAKNQLHI----GTVIGICSSKSMEQNQQVGFDY-TIPYDEGEGFIANlrdlmktpefigKKFdLIFDSAGTSEF 271
                 354556.9**************9888887775....67***********999999855.566**999888888888888877774447*********** PP

     DUF2855 225 leklhealkd.kgklvlsvavG.sthkvksseel 256
                    + e lk   +++ ++ avG  t+ +++++e+
  CCD23775.1 272 YPVMDEFLKPrVENSYYVTAVGpRTPVEYTPKEI 305
                 *********99999999*****345555655555 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.2e-05     0.052      26      82 ..     177     235 ..     168     251 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
  LDcluster4  26 GrliAkegavlltGgrtGvmeaaskGakea..gGltvGilpassekehsnkyvdiiiyT 82 
                 G++  k  +vl++G+ t+v ++  + ak++   G+++Gi  ++s +++++  +d+ i+ 
  CCD23775.1 177 GQIWNKDSMVLVFGASTSVANCFVQIAKNQlhIGTVIGICSSKSMEQNQQVGFDYTIPY 235
                 666678899*****************9986336*********99999999889998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       387  (0.0215851); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2764.93
//
Query:       CCD23776.1  [L=924]
Description: hypothetical protein NDAI_0C01150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-33  114.0   0.5      7e-33  114.0   0.5    3.1  3  PINIT         PINIT domain
      2e-21   75.5   7.2    3.6e-21   74.6   7.2    1.4  1  zf-MIZ        MIZ/SP-RING zinc finger
    4.9e-10   38.9   0.1    9.9e-10   38.0   0.1    1.5  1  SAP           SAP domain
    8.3e-05   22.3   1.2    0.00019   21.2   1.2    1.6  1  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
    0.00022   21.0   0.9       0.17   11.7   0.1    2.7  2  WIYLD         Ubiquitin-binding WIYLD domain
  ------ inclusion threshold ------
      0.023   14.7   2.3      0.054   13.5   2.3    1.7  1  zf-RING_UBOX  RING-type zinc-finger
       0.18   11.7   4.0       0.37   10.7   4.0    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
        2.2    8.5   4.2          4    7.7   4.2    1.5  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING


Domain annotation for each model (and alignments):
>> PINIT  PINIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.5   3.1e-36     7e-33       2     146 .]     155     294 ..     154     294 .. 0.95
   2 ?   -3.0   4.2       3.6   8.2e+03      49     124 ..     540     624 ..     503     629 .. 0.56
   3 ?   -2.2   0.1       2.1   4.8e+03      28      51 ..     681     704 ..     665     721 .. 0.60

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 3.1e-36
       PINIT   2 lrfkkspFYeileel.skpteleasskkrnsvsfsfklseeqveklakssrkekrvqyqlrlfcasedsksesseeqdiefPpqleikvNgkevkanlr 99 
                 + f+kspFY++++ + ++ ++l+ + ++r sv+  fkl+++++e+l +ss++     y++ l+c+ ++ +s+++++ +i fP ++ei +N+ ++k+n+r
  CCD23776.1 155 FYFRKSPFYKPIRLIeGTSIKLK-RCTGRASVKALFKLNAKDWELL-NSSEN-----YKVLLYCGPTHLPSQNNKKEPIMFPFPNEIVFNSIPIKDNVR 246
                 68*************87888888.7999*99***************.77799.....*******99998888999************************ PP

       PINIT 100 glknkpGtarPvditkllrlspa.etNrieityaltkkkYylvvylVk 146
                 glknk Gta+P+d+t++l+++++ +tN ++++ya++k++++l++ylVk
  CCD23776.1 247 GLKNKIGTAKPADLTPHLKKNSTtATNVLDFIYAFQKTDFILFCYLVK 294
                 ********************9999***********************8 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.6
       PINIT  49 ssrkekrvqyqlrlfcased.........sksesseeqdiefPpqleikvNgkev.kanlrglknkpGtarPvdi..tkllrlspaet 124
                 s+++++++q+q +l +a ++         ++++  ++ +   P++ +i+ N +   ++ ++ +  +    +P+++   ++ ++ p+++
  CCD23776.1 540 SQNNQSQSQLQSQLHTAMQTplhgqvqgqEQQQIRSQEQFVTPTTTTITTNVQAGiNPFFPSITTRI---QPPNVliSQQQQIPPNNN 624
                 2222445556666665444456666666544444455555668888888887654366666666666...444433356666666554 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.1
       PINIT  28 krnsvsfsfklseeqveklakssr 51 
                  +n+ ++ f++++e +++ +    
  CCD23776.1 681 IHNQHNYPFNFEPESLQRHNIPAT 704
                 335567777777777666644333 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   7.2   1.6e-24   3.6e-21       1      49 [.     341     389 ..     341     390 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.6 bits;  conditional E-value: 1.6e-24
                 EESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT-- CS
      zf-MIZ   1 vslkCplslsrikiPvrgekCkHlqCfdlesylelnertetWnCPvCsk 49 
                 +sl+Cp+s++r+k+P++++ C+HlqCfd+ +yl+++ + +tW+CPvC+ 
  CCD23776.1 341 MSLQCPISYTRMKYPTKSILCEHLQCFDAVWYLHSQLQVPTWECPVCQI 389
                 79*********************************************95 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.1   4.4e-13   9.9e-10       2      34 ..      31      63 ..      30      64 .. 0.93

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 4.4e-13
                TT--HHHHHHHHHHTT--TTS-HHHHHHHHHHH CS
         SAP  2 skltVaeLKeeLkkrGLptsGkKaeLieRLkey 34
                ++l+V+eLK ++++++L+t+G+Kae++ R+  +
  CCD23776.1 31 ETLKVTELKTLCRSLNLATNGRKAEIQSRIAGF 63
                68***************************9877 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   1.2   8.5e-08   0.00019       6      56 ..     337     387 ..     332     388 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8.5e-08
                 XSSBXXSB-TTTSSB-SSEEEESSS--E..EEHHHHHHHCTTTS-EE-SCCC- CS
      zf-Nse   6 eeerislkCPltlqpfeePvtskkCpHv..FEreaIlelikrkktvkCPvagC 56 
                 ++  +sl+CP++   ++ P +s  C+H   F+    l+   +++t +CPv  C
  CCD23776.1 337 TSMVMSLQCPISYTRMKYPTKSILCEHLqcFDAVWYLHSQLQVPTWECPV--C 387
                 56789**********************6448877655555699*******..8 PP

>> WIYLD  Ubiquitin-binding WIYLD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0024       5.3      30      49 ..      91     110 ..      88     113 .. 0.91
   2 !   11.7   0.1   7.4e-05      0.17      26      52 ..     182     209 ..     172     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0024
       WIYLD  30 kkLLkvYgknWeliEednYr 49 
                 +++L vY++ W+ i+ +nY+
  CCD23776.1  91 NQMLPVYNNLWSAIKTGNYQ 110
                 689*****88*********8 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 7.4e-05
       WIYLD  26 rpvlkkLLkvYgknWeliEe.dnYrvLa 52 
                 r+++k L k+  k+Wel+   +nY+vL+
  CCD23776.1 182 RASVKALFKLNAKDWELLNSsENYKVLL 209
                 789***************9889****96 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.3   2.4e-05     0.054       1      39 []     345     385 ..     345     385 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
  zf-RING_UBOX   1 CpIClelftdP..lvlpCGHtFCreClw.elskslegafkCP 39 
                   CpI++  ++ P   +l C H  C + +w   s+ + ++  CP
    CCD23776.1 345 CPISYTRMKYPtkSIL-CEHLQCFDAVWyLHSQLQVPTWECP 385
                   ***********75335.**********998899999999998 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.0   0.00016      0.37       1      40 []     344     387 ..     344     387 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCi...lrsLeekn.eCPlC 40 
                 +Cpi + ++k p+ ++ C+H  C + +   +  L+    eCP+C
  CCD23776.1 344 QCPISYTRMKYPTKSILCEHLQCFDAVwylHSQLQVPTwECPVC 387
                 7***********************985232568898899****9 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.2    0.0018         4       1      42 []     345     387 ..     345     387 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0018
  zf-C3HC4_4   1 CPiCldYLekPv.sleCGhsfClsCisslqkepdgeqllCplC 42 
                 CPi    +++P+ s+ C+h  C+  +  l  + +   + Cp+C
  CCD23776.1 345 CPISYTRMKYPTkSILCEHLQCFDAVWYLHSQLQVPTWECPVC 387
                 999999999**878************99999999999****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1563  (0.0871772); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 6032.13
//
Query:       CCD23777.1  [L=234]
Description: hypothetical protein NDAI_0C01160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00027   21.1   0.0    0.00043   20.5   0.0    1.4  1  rve             Integrase core domain
     0.0021   18.1   0.8     0.0039   17.3   0.8    1.5  1  Integrase_H2C2  Integrase zinc binding domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   4.8e-08   0.00043       7      83 ..      41     115 ..      35     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.8e-08
         rve   7 lwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskaf 83 
                  + +D++  ++  +   +  +lvv+d  ++++  +++++ +d+s++++ll + +   +gv p++++sD+ + +t  +f
  CCD23777.1  41 SIGIDFVsGMK--EAHNFDCVLVVIDRLTKMARFIPTKKTIDTSDCADLLINHIICHHGV-PDEIVSDRDRLFTGVKF 115
                 56678885455..4455899***************************************9.********999987655 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.8   4.4e-07    0.0039      38      57 ..       1      20 [.       1      21 [. 0.91

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 4.4e-07
  Integrase_H2C2 38 mrkdvkkyvksCetCqrrkp 57
                    m + +++y ++C++Cqr+k+
      CCD23777.1  1 MVSIIEQYTRTCPQCQRNKH 20
                    6788***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       584  (0.0325729); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1706.33
//
Query:       CCD23778.1  [L=263]
Description: hypothetical protein NDAI_0C01170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-49  166.4   0.0      7e-49  165.9   0.0    1.2  1  Proteasome  Proteasome subunit
    9.5e-15   53.7   0.1    9.5e-15   53.7   0.1    1.7  2  Pr_beta_C   Proteasome beta subunits C terminal
  ------ inclusion threshold ------
       0.13   12.0   0.1        0.2   11.4   0.1    1.3  1  Dna2        DNA replication factor Dna2


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9   0.0   1.2e-52     7e-49       2     190 .]      28     208 ..      27     208 .. 0.97

  Alignments for each domain:
  == domain 1  score: 165.9 bits;  conditional E-value: 1.2e-52
                 HHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCT CS
  Proteasome   2 kkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsg 100
                 ++Gtt+vG+k++dgvv+aad+r+t+g ++++k+ + K+++i+++i++a aG+aaD++++++ + ++++l++l + r ++v       a +++++ + ++
  CCD23778.1  28 STGTTIVGLKYRDGVVIAADTRSTQGPIVADKN-CAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRSPRVV-----SALQMLKQHLFKY 120
                 68***************************7777.***********************************************.....9999999999999 PP

                 TTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 101 rrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 ++++g+ l++agvd +g  +L++i  +Gs     ++ + Gsgs aa+++le++++++l++eea+ela +a+++++ +d  sg+n++v+v+
  CCD23778.1 121 QGHIGAYLIVAGVDPTG-AHLFSIHAHGSTDVG-YYLSLGSGSLAAMAVLESQWRPELSKEEAIELASQAIQAGIWNDLGSGSNVDVCVM 208
                 ****************9.7**************.8****************************************************985 PP

>> Pr_beta_C  Proteasome beta subunits C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   1.4       1.9   1.1e+04      16      20 ..      30      34 ..      29      34 .. 0.84
   2 !   53.7   0.1   1.6e-18   9.5e-15       1      35 [.     223     257 ..     223     258 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.9
                TSS-E CS
   Pr_beta_C 16 GTTaV 20
                GTT V
  CCD23778.1 30 GTTIV 34
                9**88 PP

  == domain 2  score: 53.7 bits;  conditional E-value: 1.6e-18
                 TTS-S--SS-----TTSS-EEEEEEE-SSSS---X CS
   Pr_beta_C   1 PNekgeRqgsYkfkrGTTaVLkekVplklevveet 35 
                 PN+++ +q+sYkf+rGTTaVLke++   +e++ee 
  CCD23778.1 223 PNVREAKQQSYKFARGTTAVLKESIVNVCEIEEEE 257
                 9************************999******7 PP

>> Dna2  DNA replication factor Dna2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   3.4e-05       0.2     105     187 ..     176     258 ..     162     261 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.4e-05
        Dna2 105 ldkekleelldklleknleelyalglteeeakeeikekleeiekwakkyvkksnkakakvekkkekkeklsiskvldiEEniw 187
                 l+ke+  el+++++++ + + +  g++++ +  e+ + +e ++++++  v++ +++++k ++++++  k si +v++iEE+ +
  CCD23778.1 176 LSKEEAIELASQAIQAGIWNDLGSGSNVDVCVMEVGKDAEYLRNYVTPNVREAKQQSYKFARGTTAVLKESIVNVCEIEEEEI 258
                 566666677777788777777889999***********************************999999***********9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1868.37
//
Query:       CCD23779.1  [L=317]
Description: hypothetical protein NDAI_0C01180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.9    7.3   8.4         48    4.0   5.4    3.0  2  SKI       Shikimate kinase


Domain annotation for each model (and alignments):
>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0     0.048   8.6e+02      19      32 ..      67      80 ..      66      86 .. 0.86
   2 ?    4.0   5.4    0.0027        48      28     144 ..      97     224 ..      92     247 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.048
                EEEEHHHHHHHHHT CS
         SKI 19 efiDlDeliekrtg 32
                +fiD+D+li+++++
  CCD23779.1 67 KFIDVDTLISDTVR 80
                6********98875 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0027
                 HHHHTS-HHHHHHHHHHHHHHHHHHHHHH..HHCCCSSEEEEE-TTGGGSHHHHHHHH..............HHSEEEEEE--HHHHHHHHHHTTSSGG CS
         SKI  28 ekrtgksiaeifeeegeegFrelEsevlk..elleeeglViatGGGavlseenrellk..............ekgiviyLdvsleellerlkadkeRPl 110
                 e+ ++++ aei +++  e+Fr++E+++++  el++++  +i +     lse+  +  k               k+++i  +++le+++  lk++ +R l
  CCD23779.1  97 EQLAKMKRAEIRRNYLAEAFRNEEKRLVRrdELVQQRAKIIEL-EKQNLSEKVDSESKasdltiptldavvnLKAPLIRWRTPLEKQILKLKRKYNRDL 194
                 788899999999999999******9998633688888889888.3333333322222234555666666665666677777777888888888888888 PP

                 GCSCHHHHHHHHHHHHHHHHHCCSSCEEEECTSS CS
         SKI 111 lqekskeeelleelaereplyeeaadvvvdesee 144
                 ++ +sk+++ll+ l     ly  a+  +v+e++ 
  CCD23779.1 195 IEFESKNRKLLKLLN----LYHVADEFIVTEEKL 224
                 887777666655555....666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1245  (0.0694406); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2333.84
//
Query:       CCD23780.1  [L=94]
Description: hypothetical protein NDAI_0C01190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-14   53.4   0.0    1.9e-14   53.1   0.0    1.1  1  LSM       LSM domain
    0.00092   18.8   0.1     0.0019   17.8   0.0    1.5  2  Hfq       Hfq protein


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   2.1e-18   1.9e-14       5      66 ..      23      91 ..      20      92 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 2.1e-18
                HTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET.......EEEEEEEEEEEGGGEEEEE CS
         LSM  5 klinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk.......ekrklglvliRGnnivlis 66
                + +  + ++  + g ++ G++ gfD+fmN+v++d++e+  d+k       + ++lg+++++G+ni+li+
  CCD23780.1 23 QQTPVTFWLYEQVGIRITGKISGFDEFMNVVIDDAIEIPVDPKtgvenkaKGTQLGRIMLKGDNITLIT 91
                5566677888999******************************************************96 PP

>> Hfq  Hfq protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.1e-07    0.0019      12      40 ..      23      53 ..      20      61 .. 0.80
   2 ?   -3.0   0.0      0.66   5.9e+03      25      39 ..      76      90 ..      73      93 .. 0.52

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.1e-07
                CT-EEEEEETT..S-EEEEEEEEE-SSEEEE CS
         Hfq 12 ekipvtifLvn..GiklkGviksfDnftvlL 40
                +++pvt +L    Gi++ G+i++fD+f+ ++
  CCD23780.1 23 QQTPVTFWLYEqvGIRITGKISGFDEFMNVV 53
                7899999997555**************9554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.66
                EEEEEEEEE-SSEEE CS
         Hfq 25 klkGviksfDnftvl 39
                +l  ++ + Dn t++
  CCD23780.1 76 QLGRIMLKGDNITLI 90
                554444455655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       246  (0.0137208); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 735.90
//
Query:       CCD23781.1  [L=994]
Description: hypothetical protein NDAI_0C01200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-25   90.5   1.1      1e-25   90.5   1.1    3.8  4  Xpo1      Exportin 1-like protein
    2.1e-06   27.5   2.1    1.5e-05   24.8   1.3    2.7  2  IBN_N     Importin-beta N-terminal domain
  ------ inclusion threshold ------
      0.073   13.4   0.0        5.5    7.5   0.0    3.3  2  HEAT      HEAT repeat


Domain annotation for each model (and alignments):
>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.4      0.44   2.6e+03      88     140 ..      14      59 ..      10      68 .. 0.70
   2 !   90.5   1.1   1.7e-29     1e-25       1     149 []      99     249 ..      99     249 .. 0.96
   3 ?    0.5   0.1     0.099   5.9e+02      89     148 ..     433     493 ..     421     494 .. 0.82
   4 ?   -2.9   0.0       1.1   6.5e+03      74     111 ..     884     921 ..     871     922 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.44
                 HHHHHHHHHCCHHHHHHHHHHHHHHHHTTTS-HHHHHTSCHHHHHHHHCCSCC CS
        Xpo1  88 lqileqsqskkqsselveavLkclsswvswidiglivnnpllnllfqlLsdpe 140
                 lq+++++      ++  +++L+ l+++ +  +   + ++ l+n+  qlL   e
  CCD23781.1  14 LQCISSNA----TQDDKNKALHYLEQFQRSTEAWSVCHDVLINTDAQLL---E 59 
                 44554444....3788999999999999988888888888888888887...3 PP

  == domain 2  score: 90.5 bits;  conditional E-value: 1.7e-29
                 THHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.HHHHHHHHHHHHHHHHHHHTSHTTTSCHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
        Xpo1   1 pkflrnklaealaelflqeypnnWpsffddllsllssspsglelllriLkvlpeEiadfsrskleqer.rndlkdllrsnvqkilelllqileqsqskk 98 
                 +k+++++l++ala+l++q    +W++++ ++++ l++ ps+   ll +L++lpeE+ d+ +++l+q++ ++++++l++s ++++l++l+++    +++ 
  CCD23781.1  99 QKLVVTQLSIALARLAIQF--LDWKDPVIEIINVLNPYPSV---LLGFLRILPEETLDIGSTPLTQDEfNSRIHELIDSIAEDVLKFLITCTTLLKQST 192
                 5789**************9..9***************9995...5*********************************************999888887 PP

                 HHHHHHHHHHHHHHHHTTTS-HHHHHT.SCHHHHHHHHC.....CSCCCHHHHHHHH CS
        Xpo1  99 qsselveavLkclsswvswidiglivn.npllnllfqlL.....sdpelreaavecL 149
                 +s    e +L+cl+sw  +++i+ ++  +pl++l+f+ L     +++++++aav+cL
  CCD23781.1 193 NSGISMELILRCLNSWSFEFPIEELLTvEPLISLVFESLlngahDSSDIFDAAVDCL 249
                 788999*********************999*************99999********8 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.099
                 HHHHHHHHCCHHHHHHHHHHHHHHHHTTTS-HHHHHT.SCHHHHHHHHCCSCCCHHHHHHH CS
        Xpo1  89 qileqsqskkqsselveavLkclsswvswidiglivn.npllnllfqlLsdpelreaavec 148
                   l++ ++ +++ + +ea L  l+   ++++++   + +++ ++l++l ++p++r aa+ +
  CCD23781.1 433 MALKNTTNINSNWQQLEAPLFSLRTMAQEVPLSESTQlPQIFKILCNLPEHPKIRYAATLV 493
                 4566666666778889999999999999*******99888*******99999999999866 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH CS
        Xpo1  74 dllrsnvqkilelllqileqsqskkqsselveavLkcl 111
                 + + ++ ++i+++l+  l + ++++++s+ ++ + kc+
  CCD23781.1 884 EVIIKRGSQIIDSLIIGLVTTFDSDSHSDAISCIVKCF 921
                 44555577888888888888888778888888888876 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   1.3   2.5e-09   1.5e-05       4      72 ..      32      94 ..      29      96 .. 0.87
   2 ?   -0.3   0.0      0.17     1e+03      17      44 ..     472     499 ..     464     513 .. 0.76

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2.5e-09
                HHHHHHCSTCHHHHHHHHHHCTTSH.HHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHH CS
       IBN_N  4 qLkqlekqpgflsallqilansese.levRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnll 72
                 L+q++ + +++s +  +l n++ + le+  +Aa++L+n+it+  s      +l+++   +++n+ll+ll
  CCD23781.1 32 YLEQFQRSTEAWSVCHDVLINTDAQlLELHIFAAQTLRNKITYDLS------QLDNNL-MDLKNSLLQLL 94
                79*******************999956****************988......887665.46788888876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.17
                 HHHHHHHC.TTSHHHHHHHHHHHHHHHHH CS
       IBN_N  17 allqilan.seselevRqlAalyLknlit 44 
                 +++ il n  e++  +R++A l+L ++ +
  CCD23781.1 472 QIFKILCNlPEHP-KIRYAATLVLGRYTE 499
                 5566777767888.********9988765 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.061   3.7e+02       6      28 ..     232     253 ..     227     255 .. 0.77
   2 ?    7.5   0.0   0.00091       5.5       2      29 ..     470     499 ..     470     501 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.061
                 HHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgala 28 
                 l+   ++s+++ +aA+ +L+ ++
  CCD23781.1 232 LNG-AHDSSDIFDAAVDCLCVIL 253
                 554.47888899*******9986 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00091
                 HHHHHHHHT-..SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsD..pspeVReaAakaLgalae 29 
                 lP + k l+   ++p++R+aA + Lg+  e
  CCD23781.1 470 LPQIFKILCNlpEHPKIRYAATLVLGRYTE 499
                 799999999999**************9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.24s 00:00:00.98 Elapsed: 00:00:00.41
# Mc/sec: 7231.08
//
Query:       CCD23782.1  [L=557]
Description: hypothetical protein NDAI_0C01210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.8e-77  259.1  18.0    5.8e-77  259.1  18.0    2.1  2  Choline_transpo  Plasma-membrane choline transporter
  ------ inclusion threshold ------
      0.012   15.8   0.9          2    8.7   0.1    3.5  3  ESSS             ESSS subunit of NADH:ubiquinone oxidoreducta


Domain annotation for each model (and alignments):
>> Choline_transpo  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   3.1      0.13   1.2e+03      88     262 ..     137     155 ..      98     197 .. 0.48
   2 !  259.1  18.0   6.5e-81   5.8e-77       1     326 []     204     528 ..     204     528 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.13
  Choline_transpo  88 avefessskvkalllyllfgllWtleflralqqvtvagavasWYfskkkdlpskfpvlkslkraltyhlGSialgSlilaivqllrlileylek 181
                      +v+ + ++++ +ll++                                                                              
       CCD23782.1 137 SVSATPDTNAAILLIF------------------------------------------------------------------------------ 152
                      2333333333333332.............................................................................. PP

  Choline_transpo 182 klkkkenavakcllcclkcclwclekflkflnrnayimvaiyGksFcesakdafellkrnglrvavldsvvdfvlflgkll 262
                                                                                                    +++
       CCD23782.1 153 ------------------------------------------------------------------------------SCI 155
                      ..............................................................................222 PP

  == domain 2  score: 259.1 bits;  conditional E-value: 6.5e-81
  Choline_transpo   1 iillivavllllllivlrkrirlaiallkvaskaiksnpslllvplltllllllvsafwivvavalylassgestdkvnsgsesglaavefess 94 
                      i++l+++vl++++++++r+ri+l+i +lk++++++k++p++l+v+ll +++  +++++++vv+va+y   +++++d +n g++++ ++  + s+
       CCD23782.1 204 IVFLVFTVLTAWFYWCMRSRIPLSITILKIVVDVMKKLPQTLIVSLLGTIVGSAFAFLFSVVIVATY--IKYDPQDGNNPGCQVSGGS--C-SH 292
                      79*************************************************************9998..4555555557777777744..5.68 PP

  Choline_transpo  95 skvkalllyllfgllWtleflralqqvtvagavasWYfs.kkkdlpskfpvlkslkraltyhlGSialgSlilaivqllrlileylekklkkk. 186
                      sk++++l++++f+ ++++e+++++++vt++g+++sWY+  k+++  +k+p+ +++kra+ty++GSi +gSli+a++++lr +l+ +++ + +  
       CCD23782.1 293 SKLIGILVLVFFCGYYISEVIKNVVHVTISGIYGSWYYMfKSDQGMPKWPASGAFKRAMTYSFGSISFGSLIVALLETLRETLNLVRQGVIGGg 386
                      99*************************************7766666**************************************9766666669 PP

  Choline_transpo 187 .enavakcllcclkcclwclekflkflnrnayimvaiyGksFcesakdafellkrnglrvavldsvvdfvlflgkllialltgliaylllkatl 279
                       + ++ ++ + ++++++++++++ +++n++ay ++a+yGk+++++ak+++++++++g++++++d++++++l +++++ +++++l+a+l+l+ t 
       CCD23782.1 387 iQGQWGQFGFMIIDWIMGFIQWLAQYFNHYAYSFIALYGKPYLRAAKETWYMIRQKGMDALINDNLIGLALGFYSVFASYIAALFAFLYLRYTE 480
                      9999999************************************************************************************766 PP

  Choline_transpo 280 tnpe...elnsplvpllvvfiiayliasiflsvyesavdtifvcfaeDpe 326
                       + +   ++n+p  +++++f+ia++i++i  ++++s++ t+fv++  Dpe
       CCD23782.1 481 PSYNsngSYNAP--LIAFSFVIALQICNIANETIRSGTATFFVALGNDPE 528
                      666686666666..99*******************************997 PP

>> ESSS  ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.068   6.1e+02      40      68 ..      90     118 ..      40     121 .. 0.87
   2 ?    2.0   0.1     0.026   2.3e+02      57      76 ..     258     277 ..     253     280 .. 0.87
   3 ?    8.7   0.1   0.00022         2      58      87 ..     318     347 ..     310     352 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.068
        ESSS  40 fdkdpvedkenmeavfffgvsivlVlgsv 68 
                 +d++p  + +   + f ++v + +V++s 
  CCD23782.1  90 NDNKPRWNDWPFTILFLLTVAGFIVIASL 118
                 45667788899999999999999999985 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.026
        ESSS  57 fgvsivlVlgsvfvaYlpdt 76 
                 f++  ++V+ ++++ Y p+ 
  CCD23782.1 258 FAFLFSVVIVATYIKYDPQD 277
                 8899999999******9975 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00022
        ESSS  58 gvsivlVlgsvfvaYlpdtsiqeWArrEAe 87 
                  v+i+ + gs +++++ d+++ +W    A 
  CCD23782.1 318 HVTISGIYGSWYYMFKSDQGMPKWPASGAF 347
                 46778889****************776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3882.66
//
Query:       CCD23783.1  [L=1509]
Description: hypothetical protein NDAI_0C01220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-85  286.3  50.4    1.4e-45  155.3  18.6    2.7  3  ABC2_membrane    ABC-2 type transporter
    2.6e-38  131.6   0.0    1.6e-18   67.6   0.0    2.8  2  ABC_tran         ABC transporter
    3.9e-35  119.6   9.2    1.4e-30  105.0   0.0    3.6  3  PDR_CDR          CDR ABC transporter
    7.9e-20   71.3   0.0    2.5e-19   69.7   0.0    1.9  1  ABC_trans_N      ABC-transporter N-terminal
    1.3e-07   31.4   0.1    1.8e-05   24.4   0.0    2.8  3  AAA_25           AAA domain
    8.3e-07   29.5   0.0    9.2e-05   22.9   0.0    2.5  2  AAA_16           AAA ATPase domain
    1.9e-05   24.6   0.1    0.00052   19.9   0.0    2.5  2  RsgA_GTPase      RsgA GTPase
    0.00013   22.5   0.0      0.025   15.1   0.0    2.7  2  AAA_18           AAA domain
    0.00016   21.3   0.6     0.0078   15.9   0.1    3.1  3  AAA_29           P-loop containing region of AAA domain
    0.00018   21.4   0.1       0.28   10.9   0.0    3.0  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0019   18.7   1.2      0.013   16.0   0.0    2.8  3  AAA_23           AAA domain
     0.0026   17.4   1.7       0.38   10.3   0.2    2.3  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0036   16.8   3.9     0.0099   15.3   0.1    3.1  2  SMC_N            RecF/RecN/SMC N terminal domain
     0.0036   17.2   0.4        3.2    7.6   0.2    2.6  2  NACHT            NACHT domain
     0.0038   17.5   0.4       0.12   12.6   0.1    2.5  2  AAA_28           AAA domain
     0.0039   17.3   0.0       0.46   10.6   0.0    2.6  2  AAA_33           AAA domain
     0.0066   15.2   0.2        3.5    6.2   0.0    3.6  4  AAA_13           AAA domain
  ------ inclusion threshold ------
      0.017   15.4   3.3       0.42   10.9   0.1    3.2  3  AAA_22           AAA domain
       0.02   14.7   0.0        2.1    8.1   0.0    2.5  2  dNK              Deoxynucleoside kinase
      0.027   13.8   0.0       0.73    9.1   0.0    2.3  2  DnaB_C           DnaB-like helicase C terminal domain
      0.029   14.1   0.3        3.1    7.5   0.3    2.4  2  AAA_30           AAA domain
       0.15   11.3   0.1        8.1    5.6   0.0    2.6  2  NB-ARC           NB-ARC domain
       0.16   10.9   0.0        0.3   10.0   0.0    1.3  1  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
       0.18   11.7   0.5         12    5.8   0.1    2.9  3  NTPase_1         NTPase


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2  18.7   3.8e-44   2.8e-41       2     210 .]     500     711 ..     499     711 .. 0.96
   2 !  155.3  18.6   1.9e-48   1.4e-45       2     207 ..    1182    1396 ..    1181    1398 .. 0.96
   3 ?   -3.2   0.2       6.1   4.6e+03      15      34 ..    1470    1488 ..    1459    1495 .. 0.45

  Alignments for each domain:
  == domain 1  score: 141.2 bits;  conditional E-value: 3.8e-44
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg...nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplysls 94 
                    q+k ll r+f ++  +     l+++i    +a+++g++f+++    +++ ++ r  ++ff+vlf+afs+l ++ ++    r++ e+++++ ly++s
     CCD23783.1 500 QVKYLLTRNFWRIRNNAGVS-LFMIIGNSAMAFILGSMFYKVMkkgDTSTFYFRGAAMFFAVLFNAFSSLLEI-FTLYEARPITEKHRTYSLYHPS 593
                    899*****************.99******************5447666667789*******************.********************** PP

  ABC2_membrane  95 ayvlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmpkw 188
                    a +la+v++elp  +++a+ f +i+yflv+++++   ff++ll+ +l +l +s l++++++l++++  a++ as++ll l +++Gf ip+++m +w
     CCD23783.1 594 ADALASVFSELPTKCIIAVCFNIIFYFLVDFKRNgdTFFFYLLMNVLGVLSMSHLFRCVGSLTKTLSEAMVPASMLLLALSMFTGFAIPKTKMLGW 689
                    **********************************9999*******************************************************55* PP

  ABC2_membrane 189 lqwiaylnPltyavealrsnlf 210
                      wi y+nPl+y++e+l++n+f
     CCD23783.1 690 SEWIWYINPLSYLFESLMINEF 711
                    ********************97 PP

  == domain 2  score: 155.3 bits;  conditional E-value: 1.9e-48
  ABC2_membrane    2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysls 94  
                     q k++ +r   q+wr+p+++ ++++i +++  l++g+ f+++++s +gl++++l +f+++ ++  +l++  p+f+++r ++ +re++s+++s+ 
     CCD23783.1 1182 QSKLVCRRLGEQYWRSPEYL-WSKFILTIFNQLFIGFTFFKADTSLQGLQNQMLAIFMFTVIFNPILQQYLPTFVQQRDLYeARERPSRTFSWL 1274
                     66778888899*********.**********************9999999988888888888888***************************** PP

  ABC2_membrane   95 ayvlakvlvelpvsllqalifllivyflvgldls.........rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGff 179 
                     a+++++++ve+p++ll+++i  +i+y+++g++++         r++lf+l+ +++++++ s+gl+ +++++ +e+a++ asl++++ l ++G++
     CCD23783.1 1275 AFIISQIVVEIPWNLLAGTIAYFIYYYPIGFYRNaseagqlheRGALFWLFSCAYYVYIGSMGLMCISFNEIAENAANTASLMFTMALSFCGVM 1368
                     *************************************99988888************************************************* PP

  ABC2_membrane  180 ipidsmpkwlqwiaylnPltyavealrs 207 
                      ++++mp++++++++++Plty+++al+s
     CCD23783.1 1369 TTPSNMPRFWIFMYRVSPLTYLIDALLS 1396
                     *************************987 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.1
  ABC2_membrane   15 wrdpslgllwrliqplllal 34  
                     wr+  ++ +  +++  + ++
     CCD23783.1 1470 WRNFGIF-ICFIAFNYMAGI 1488
                     4444444.222222222222 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   1.9e-19   1.4e-16       1     136 [.     171     331 ..     171     332 .. 0.85
   2 !   67.6   0.0   2.1e-21   1.6e-18       1     137 []     883    1034 ..     883    1034 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 1.9e-19
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren................ 79 
                 lk ++  l++ge+++++G+ G+G++tLlk ++ +++     e+++l   + ++  + ++++r e+ +  + + + p+ltv+e+                
  CCD23783.1 171 LKPMDGCLNPGELLVVLGRPGSGCTTLLKSISSNTHGfdvGEDSVLS-YAGFTPdDIKKHYRGEVVYNAEADIHLPHLTVYETlytvsrlktpqnrikg 268
                 6778899***************************9988444444522.23333247899***************************9999988777765 PP

                 ...HHHTC.....HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ...xxxxx.....xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdee.....iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                    +          e a++++gl+++++t+v+++  + +SgG+++rv++a++ ++ +k+ ++D++t
  CCD23783.1 269 vdrD---TfarhlTEVAMATYGLSHTRNTKVGDDFvRGVSGGERKRVSIAEVSICGSKFQCWDNAT 331
                 5441...156678999***************99989****************************99 PP

  == domain 2  score: 67.6 bits;  conditional E-value: 2.1e-21
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................ 79  
                  l+nv+  +k+g+++a++G +GaGK+tLl +la+ ++     Ge+ ++g+       es+ ++ig+++q++ + +++tvre+                
  CCD23783.1  883 LNNVDGWVKPGTLTALMGASGAGKTTLLDCLAERVTMgvITGEVSVNGRLR----DESFPRSIGYCQQQDLHLKTSTVRESlrfsaylrqpsdvsie 975 
                  789999****************************98777888887776544....46************99999999***************99998 PP

                  HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran   80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137 
                  e+++ +e++++ l++++ +d vv+  ++ L   q++r+ +   l+ kpkll+ lDEpt+
  CCD23783.1  976 EKNKYVEEIIKILEMEKYADAVVGVAGEGLNVEQRKRLTIGVELAAKPKLLVfLDEPTS 1034
                  88888********************************************98659***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.5         6   4.5e+03      44      83 ..     507     549 ..     497     555 .. 0.67
   2 !  105.0   0.0   1.9e-33   1.4e-30       1      91 [.     722     812 ..     722     813 .. 0.98
   3 !   18.7   0.7   1.6e-06    0.0012      32      76 ..    1456    1499 ..    1448    1509 .] 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 6
     PDR_CDR  44 shlwr...nfgiliaflifflalyllatelisaekskgevlvf 83 
                  + wr   n g+ + ++i   a+ +++ +++ + ++kg++  f
  CCD23783.1 507 RNFWRirnNAGVSLFMIIGNSAMAFILGSMFYKVMKKGDTSTF 549
                 5677666689999888888888888776666555555544333 PP

  == domain 2  score: 105.0 bits;  conditional E-value: 1.9e-33
     PDR_CDR   1 vPsgpgyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlvfkrgkapkk 91 
                 vP gp y n++ +nr+C++vGav+Gq+yV Gdd++++s+gy+++h+wr +gi +a++iffl+lyl+++e++  +k+kge+lvf++g  +k+
  CCD23783.1 722 VPFGPAYANINGTNRICSTVGAVAGQDYVLGDDFVKESYGYEHKHKWRSLGIGLAYVIFFLFLYLVLCEFNGGAKQKGEILVFPQGIIRKM 812
                 8************************************************************************************988776 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 1.6e-06
     PDR_CDR   32 ddYlelsfgyssshlwrnfgiliaflifflalyllatelisaeks 76  
                  ++Yl+ s + +++++wrnfgi i+f++f  ++ +l+  l +  k+
  CCD23783.1 1456 NSYLA-SVSSHYKNRWRNFGIFICFIAFNYMAGILFYYLARVPKK 1499
                  67888.889999****************99999988877765554 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   3.3e-22   2.5e-19       1      81 []      41     147 ..      41     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 3.3e-22
  ABC_trans_N   1 eLartlsrq..ssssssssss............e...sssedeeeed........se.Fdlekwlknlreridrdg..ikprklGVvFknLtVeGvgs 70 
                  +Lar+l++q    s+ s+  +            e   +  +++e+e+        se F++++w++n+ +   +d+  +kp++lG+v+knL+++G +s
   CCD23783.1  41 DLARSLTHQsgNISTYSN--QdaatesiftpdmEginPIFTNKEAEEynekldptSEnFSSKAWVQNMANVVTSDPefYKPYSLGCVWKNLSASGESS 136
                  59******9643333333..23588888887661555444444444455667889999**************************************** PP

  ABC_trans_N  71 gadyqpTvgna 81 
                  +++yq+Tv+n+
   CCD23783.1 137 DVAYQSTVLNM 147
                  *********97 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.066        49      26      53 ..     174     201 ..     149     212 .. 0.88
   2 !   24.4   0.0   2.4e-08   1.8e-05      15      65 ..     875     924 ..     870     933 .. 0.85
   3 ?   -2.2   0.0       3.4   2.5e+03      71     109 ..     994    1032 ..     986    1057 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.066
      AAA_25  26 vkgllpagelallaGapgtGKttlaldl 53 
                 ++g+l  gel ++ G+pg+G ttl+ ++
  CCD23783.1 174 MDGCLNPGELLVVLGRPGSGCTTLLKSI 201
                 6799*******************98766 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 2.4e-08
      AAA_25  15 laapppprrwlvkgllpagelallaGapgtGKttlaldlalavatGkpwlg 65 
                 ++++ ++    v+g++  g+l++l+Ga+g+GKttl+  la  v+ G   +g
  CCD23783.1 875 IKTETRRILNNVDGWVKPGTLTALMGASGAGKTTLLDCLAERVTMGV-ITG 924
                 67778888889*****************************9999776.444 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 3.4
      AAA_25   71 qgkVlyvsaEdsedelrrRlravgealrddarllvldla 109 
                    +V+ v++E+ + e r+Rl    e ++ ++ l +ld +
  CCD23783.1  994 ADAVVGVAGEGLNVEQRKRLTIGVELAAKPKLLVFLDEP 1032
                  568999*******9*****99444444667777777754 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.083        62      25      45 ..     182     202 ..     167     284 .. 0.85
   2 !   22.9   0.0   1.2e-07   9.2e-05       7     143 ..     877    1031 ..     876    1062 .. 0.56

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.083
      AAA_16  25 elvllsGesGvGKsslvrell 45 
                 el+++ G +G+G ++l++++ 
  CCD23783.1 182 ELLVVLGRPGSGCTTLLKSIS 202
                 899**************9886 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.2e-07
      AAA_16    7 eeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql....esaipysa.laqalareellrqlldeaesaeleawr 98  
                   e++++l+ ++ + +++  l+ l G+sG GK++l+++l+++++     +++g+   +    +++ p+s+ + q+ +  +l +   +e+  +  ++ r
  CCD23783.1  877 TETRRILNNVDGWVKPG-TLTALMGASGAGKTTLLDCLAERVTMG---VITGEVSVNgrlrDESFPRSIgYCQQQDL-HLKTSTVRES-LRFSAYLR 967 
                  58899999999999998.6999*****************988854...55555555533334456665556666644.5555555552.22444444 PP

      AAA_16   99 ekleeala....................avpelagaeasrllellkrllallsrderp.lvlvlDd 143 
                  +  + +++                    av  +ag++ +   ++   + + l+   +p l+++lD+
  CCD23783.1  968 QPSDVSIEeknkyveeiikilemekyadAVVGVAGEGLNVEQRKRLTIGVELAA--KPkLLVFLDE 1031
                  444444444444555555555577766633333333332222222222222222..2226666665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.31   2.3e+02      98     123 ..     179     205 ..     153     218 .. 0.81
   2 !   19.9   0.0     7e-07   0.00052      76     131 ..     870     927 ..     846     933 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.31
                  TT.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  98 kd.ktsvlvGqSGvGKStLinallpel 123
                  +  ++ v++G  G G +tL++++ +++
   CCD23783.1 179 NPgELLVVLGRPGSGCTTLLKSISSNT 205
                  444899*****************9975 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 7e-07
                  TSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-..----S--- CS
  RsgA_GTPase  76 gyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpel..elktgevs 131
                   y+v  ++++t++ l+++  ++k   +++l+G SG+GK+tL++ l+++    + tgevs
   CCD23783.1 870 CYDVQ-IKTETRRILNNVDGWVKPgTLTALMGASGAGKTTLLDCLAERVtmGVITGEVS 927
                  45554.456778899999999999899*******************9751144567776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.065        48       2      25 ..     185     212 ..     184     243 .. 0.77
   2 !   15.1   0.0   3.3e-05     0.025       3      95 ..     898     997 ..     897    1027 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.065
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf...g 25 
                 ++ G pG+G ttl k +s+ + gf    
  CCD23783.1 185 VVLGRPGSGCTTLLKSISSNThGFdvgE 212
                 589**************99986775541 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.3e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldaleenss.......aleegknlvidghlaeleseaakdi 94 
                 l+G++G+GKttl + L++r  +gv+ ++v  +++l++e +p  +  +++ d +   + +++  + s+        + e+kn +++ ++  le e++ d+
  CCD23783.1 898 LMGASGAGKTTLLDCLAERVTMGVITGEVSVNGRLRDESFPRSIGYCQQQDLHLKTSTVRESLRFSAylrqpsdVSIEEKNKYVEEIIKILEMEKYADA 996
                 89*****************88888888888888888888888444444444444444444444444444445554444555566666666666666655 PP

      AAA_18  95 k 95 
                 +
  CCD23783.1 997 V 997
                 5 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.37   2.7e+02      23      42 ..     182     201 ..     175     203 .. 0.80
   2 !   15.9   0.1     1e-05    0.0078      22      42 ..     893     913 ..     884     919 .. 0.85
   3 ?   -1.2   0.0       2.3   1.8e+03      19      40 ..    1079    1100 ..    1071    1102 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.37
      AAA_29  23 gatlltGpsGsGKSTllDAi 42 
                 +  ++ G+ GsG +Tll +i
  CCD23783.1 182 ELLVVLGRPGSGCTTLLKSI 201
                 467889**********9665 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1e-05
      AAA_29  22 kgatlltGpsGsGKSTllDAi 42 
                    t l+G+sG+GK+TllD +
  CCD23783.1 893 GTLTALMGASGAGKTTLLDCL 913
                 34799**************87 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.3
      AAA_29   19 idlkgatlltGpsGsGKSTllD 40  
                  +++ g t+  G+ G G  T++D
  CCD23783.1 1079 MQRGGKTVYFGDLGKGCQTMID 1100
                  34456999*************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00038      0.28       1      26 [.     895     914 ..     895     941 .. 0.80
   2 !    6.8   0.0    0.0067         5     254     296 ..    1021    1061 ..    1009    1068 .. 0.80
   3 ?   -3.1   0.0       6.9   5.1e+03     153     195 ..    1457    1499 ..    1453    1503 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00038
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarld 26 
                 l++l G+ g+GK++LLd+l      +
  CCD23783.1 895 LTALMGASGAGKTTLLDCL------A 914
                 699***************9......3 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0067
      AAA_21  254 alkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296 
                  a +k  l+++DEp +gL+ +   ++ +l+k+l++  +Q il T
  CCD23783.1 1021 AKPK-LLVFLDEPTSGLDSQTAWSICQLMKKLAD-HGQAILCT 1061
                  5555.89************9999999*****999.66665544 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 6.9
      AAA_21  153 sllllldglrkerigllnifadyfgfakekrllqrlvrslklv 195 
                  s+l +  + +k+r++++ if+ ++ f+   ++l+ ++ ++ + 
  CCD23783.1 1457 SYLASVSSHYKNRWRNFGIFICFIAFNYMAGILFYYLARVPKK 1499
                  677777788888*************999999998888777665 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.6     2e+03      21      70 ..     183     233 ..     178     294 .. 0.76
   2 ?   -2.7   0.1       9.1   6.8e+03     155     171 ..     452     468 ..     409     487 .. 0.62
   3 !   16.0   0.0   1.7e-05     0.013      21      55 ..     895     930 ..     891    1014 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.6
      AAA_23  21 ltlItGpNGaGKTTildAiklaLyget.prlsrksgrgfeksdveiesegk 70 
                 l ++ G  G+G TT+l  i   + g+  ++ s  s+ gf  +d++ + +g+
  CCD23783.1 183 LLVVLGRPGSGCTTLLKSISSNTHGFDvGEDSVLSYAGFTPDDIKKHYRGE 233
                 56788999***********99887766344455556677777777666654 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 9.1
      AAA_23 155 leelekeleeledekkl 171
                  ++l ke++++ + ++ 
  CCD23783.1 452 YKDLMKEIDQKLNNDNI 468
                 22333333333332222 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 1.7e-05
      AAA_23  21 ltlItGpNGaGKTTildAik.laLygetprlsrksg 55 
                 lt++ G  GaGKTT+ld++   ++ g  +++ + +g
  CCD23783.1 895 LTALMGASGAGKTTLLDCLAeRVTMGVITGEVSVNG 930
                 899****************85455666655555553 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.1    0.0093       6.9       3      27 ..     184     208 ..     182     211 .. 0.87
   2 !   10.3   0.2   0.00051      0.38       3      37 ..     896     927 ..     894     936 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0093
                 EEEEESTTCCHHHHHHHHHCT--SS CS
        cobW   3 tvltGflGsGKTtLlnhllenragl 27 
                 +v+ G +GsG TtLl+++ +n++g 
  CCD23783.1 184 LVVLGRPGSGCTTLLKSISSNTHGF 208
                 6899**************9998876 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00051
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-S CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklavivNefg 37 
                 t l G  G+GKTtLl  l e+     + vi++e++
  CCD23783.1 896 TALMGASGAGKTTLLDCLAER---VTMGVITGEVS 927
                 7899************99866...89999999987 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.9   3.7e+03      27      44 ..     184     201 ..     179     204 .. 0.88
   2 !   15.3   0.1   1.3e-05    0.0099      84     215 ..     945    1080 ..     884    1085 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.9
                 EEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAi 44 
                  +++G+ GSG + ll +i
  CCD23783.1 184 LVVLGRPGSGCTTLLKSI 201
                 5899***********999 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.3e-05
                  EETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   84 dnedkklkiekeevsisrrvkrkgeseykingkevtkkevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDe 173 
                  +++d +lk+++ + s++ +++  + s++ i++k+   +e+ ++le+++            L   +++ + + +     ++kp+ l++lDe  + LD 
  CCD23783.1  945 QQQDLHLKTSTVRESLRFSAYLRQPSDVSIEEKNKYVEEIIKILEMEKYADAvvgvageGLNVEQRKRLTIGVE---LAAKPKLLVFLDEPTSGLDS 1038
                  44444455555566777777777777777777777777777777777766652221111222223333333333...3579**************** PP

                  HHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  174 knvkkvaellkeksknaQfivislreemlekadklvgvtkve 215 
                  +    +++l+k+  ++ Q i  ++++     ++++ ++ + +
  CCD23783.1 1039 QTAWSICQLMKKLADHGQAILCTIHQPSAILMQEFDRLLFMQ 1080
                  *************************99988888877765544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0067         5       2      22 ..     183     203 ..     182     214 .. 0.90
   2 !    7.6   0.2    0.0043       3.2       3      25 ..     896     918 ..     894     930 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0067
                 CEEEEC-TTTCHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklal 22 
                 l+++ G++GsG TtLl+++ +
  CCD23783.1 183 LLVVLGRPGSGCTTLLKSISS 203
                 689***************987 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0043
                 EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawa 25 
                  +l G++G GKTtLl  la+   
  CCD23783.1 896 TALMGASGAGKTTLLDCLAERVT 918
                 6799***********99988765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.2   1.5e+02       3      26 ..     185     210 ..     183     219 .. 0.80
   2 !   12.6   0.1   0.00017      0.12       3      27 ..     897     922 ..     895     939 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.2
      AAA_28   3 vitGgestGKTtlleaLaar..gypv 26 
                 v++G +++G Ttll+ ++++  g+ v
  CCD23783.1 185 VVLGRPGSGCTTLLKSISSNthGFDV 210
                 899**************954347766 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00017
      AAA_28   3 vitGgestGKTtlleaLaar.gypvv 27 
                 +++G++++GKTtll  La+r  + v+
  CCD23783.1 897 ALMGASGAGKTTLLDCLAERvTMGVI 922
                 799***************99644444 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.07        53       1      35 [.     183     217 ..     183     285 .. 0.76
   2 !   10.6   0.0   0.00062      0.46       2      32 ..     896     926 ..     895     986 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.07
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdtlrr 35 
                 l+++ G pGsG +tl++++  +++++ + +d++++
  CCD23783.1 183 LLVVLGRPGSGCTTLLKSISSNTHGFDVGEDSVLS 217
                 67899**************9999999999998543 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00062
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdt 32 
                 + l G++G+GK+tl++ l+++ ++ +++  +
  CCD23783.1 896 TALMGASGAGKTTLLDCLAERVTMGVITGEV 926
                 5689***************999977776665 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2      0.22   1.6e+02     144     217 ..      20      91 ..       5     109 .. 0.75
   2 ?   -2.6   0.0       2.1   1.6e+03      23      38 ..     900     915 ..     898     921 .. 0.83
   3 !    6.2   0.0    0.0047       3.5     527     561 ..    1024    1054 ..    1018    1065 .. 0.83
   4 ?    2.7   0.0     0.052        39     247     283 ..    1434    1472 ..    1426    1474 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.22
      AAA_13 144 kknsalsealkglkyeekfkerllkelkkknrkaaellsdeelkakletvesenlpelaplslssidldalek.a 217
                 + +s+l+e  +g+ y++++  r+l++  +  ++ +++++ ++++a++e++++  ++ ++p+ +++++ ++ ek +
  CCD23783.1  20 SSQSNLHEY-HGFDYDAEQRVRDLARSLT--HQSGNISTYSNQDAATESIFTPDMEGINPIFTNKEAEEYNEKlD 91 
                 445566644.5888888777777776555..4799*************************987777776666654 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.1
      AAA_13  23 GwNGaGKTtLSrllrs 38 
                 G+ GaGKTtL   l++
  CCD23783.1 900 GASGAGKTTLLDCLAE 915
                 888******9777765 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0047
      AAA_13  527 dkivviDDPvSSLDsnslfivfsliksrllkkkka 561 
                  +  v++D P S LDs+  ++++ l+k+ +    + 
  CCD23783.1 1024 KLLVFLDEPTSGLDSQTAWSICQLMKKLA----DH 1054
                  56799*********************997....33 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.052
      AAA_13  247 Glelheas..sdtCpFCgqplpaerkaaLeahFddefee 283 
                  G ++ ++s  +d+C+FC+ + +++  a+  +h+ ++  +
  CCD23783.1 1434 GTGYLKDSsaTDECAFCTVSDTNSYLASVSSHYKNRWRN 1472
                  88899966589*********************9987765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.11        85       7      28 ..     183     204 ..     179     224 .. 0.88
   2 ?   -2.9   0.0        10   7.4e+03      51      88 ..     450     486 ..     446     489 .. 0.71
   3 ?   10.9   0.1   0.00057      0.42       5      29 ..     893     917 ..     890     934 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.11
      AAA_22   7 ilvvtGesGtGKTtllrrlleq 28 
                 +lvv G +G+G Ttll+ + ++
  CCD23783.1 183 LLVVLGRPGSGCTTLLKSISSN 204
                 799*************987665 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 10
      AAA_22  51 tsskdllrellralglelkaerlsseell.ealeqalra 88 
                  + kdl++e+ ++l++++ +   s+ ++  +++++++++
  CCD23783.1 450 QNYKDLMKEIDQKLNNDNIE--ESRTAVKeAHIAKQSKR 486
                 46889999999999988877..66666666677666665 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00057
      AAA_22   5 agilvvtGesGtGKTtllrrlleql 29 
                  ++++++G sG+GKTtll  l+e+ 
  CCD23783.1 893 GTLTALMGASGAGKTTLLDCLAERV 917
                 57899**************999875 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.059        44       2      49 ..     185     233 ..     184     274 .. 0.84
   2 ?    8.1   0.0    0.0028       2.1       5      41 ..     900     936 ..     897     996 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.059
                 EEEESTTSSHHHHHHHHHCCST.CEEEE-HHHHCCSSSSHHHHHHHHSH CS
         dNK   2 vveGnIgaGKstlvklLskklg.vkvfeEpvdkwtnvqknlLekfYkdp 49 
                 vv G  g+G +tl+k +s ++  + v e++v  +       ++k Y+  
  CCD23783.1 185 VVLGRPGSGCTTLLKSISSNTHgFDVGEDSVLSYAGFTPDDIKKHYRGE 233
                 788999*********88766655**********9888889999999765 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0028
                 ESTTSSHHHHHHHHHCCSTCEEEE-HHHHCCSSSSHH CS
         dNK   5 GnIgaGKstlvklLskklgvkvfeEpvdkwtnvqknl 41 
                 G  gaGK+tl++ L++++ + v++ +v+ +   + + 
  CCD23783.1 900 GASGAGKTTLLDCLAERVTMGVITGEVSVNGRLRDES 936
                 788********************99999886655544 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00098      0.73       6      43 ..     168     205 ..     164     217 .. 0.87
   2 ?    2.1   0.0      0.14     1e+02      13      45 ..     887     919 ..     875     929 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00098
                 THHHHHHCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C   6 fkdLDkltsGlqkgdliiiAarpsmGktalalniaena 43 
                 f+ L  + + l++g+l+++ +rp+ G t+l  +i +n+
  CCD23783.1 168 FQILKPMDGCLNPGELLVVLGRPGSGCTTLLKSISSNT 205
                 7778888899*********************9998875 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.14
                 CTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  13 tsGlqkgdliiiAarpsmGktalalniaenaav 45 
                  + +++g+l+ + + ++ Gkt+l   +ae++++
  CCD23783.1 887 DGWVKPGTLTALMGASGAGKTTLLDCLAERVTM 919
                 334589******************999998875 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.049        37      18      39 ..     181     202 ..     174     216 .. 0.85
   2 ?    7.5   0.3    0.0042       3.1      19      42 ..     894     917 ..     886     929 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.049
      AAA_30  18 drvavltGpAGtGKttalkalr 39 
                   + v+ G++G+G tt+lk++ 
  CCD23783.1 181 GELLVVLGRPGSGCTTLLKSIS 202
                 45899**************985 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0042
      AAA_30  19 rvavltGpAGtGKttalkalreaw 42 
                  +++l G+ G+GKtt+l  l+e +
  CCD23783.1 894 TLTALMGASGAGKTTLLDCLAERV 917
                 58999************9998765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.011       8.1      22      51 ..     183     208 ..     169     217 .. 0.82
   2 ?    2.5   0.0     0.089        67      21      38 ..     894     911 ..     876     919 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.011
                 EEEEEESTTSSHHHHHHHHCCSHCCCCCCB CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnksdevegrF 51 
                 ++ + G++G+G ttl+k+i ++    ++ F
  CCD23783.1 183 LLVVLGRPGSGCTTLLKSISSN----THGF 208
                 67899**************988....4455 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.089
                 EEEEEEESTTSSHHHHHH CS
      NB-ARC  21 lvvalvGmgGvGKttlak 38 
                  + al+G  G GKttl+ 
  CCD23783.1 894 TLTALMGASGAGKTTLLD 911
                 56789**********985 PP

>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0004       0.3     209     242 ..     886     919 ..     873     928 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0004
                      -GGGS-TT-EEEE-S--STT--SB-HHHHHCCEE CS
  OCD_Mu_crystall 209 kaewvkpGahinavgadapgkteLdddilkradi 242
                      ++ wvkpG++  ++ga+  gkt L d +  r+ +
       CCD23783.1 886 VDGWVKPGTLTALMGASGAGKTTLLDCLAERVTM 919
                      578*********************9988887765 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.17   1.3e+02       3      23 ..     185     205 ..     183     221 .. 0.85
   2 ?    5.8   0.1     0.016        12       4      43 ..     898     931 ..     896     934 .. 0.83
   3 ?   -1.5   0.0       2.8   2.1e+03     116     144 ..    1046    1073 ..    1040    1077 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.17
                 EEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlell 23 
                 ++ G+pG+G tTl+k ++++ 
  CCD23783.1 185 VVLGRPGSGCTTLLKSISSNT 205
                 677************999876 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.016
                 EE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE----- CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkssgvkvgGfyteevreggr 43 
                 + G +G GKtTl++ ++e +        G++t ev  +gr
  CCD23783.1 898 LMGASGAGKTTLLDCLAERV------TMGVITGEVSVNGR 931
                 6799*************999......57888888877765 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.8
                  HHHHHHHTTTSEEEEE--SS--SHHHHHH CS
    NTPase_1  116 eaveevLksekpvlavihrrkdlalveei 144 
                  + ++++ ++++ +l +ih++ +  l++e+
  CCD23783.1 1046 QLMKKLADHGQAILCTIHQP-SAILMQEF 1073
                  6778888899*********9.55666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.06u 0.32s 00:00:01.38 Elapsed: 00:00:00.50
# Mc/sec: 9113.08
//
Query:       CCD23784.1  [L=511]
Description: hypothetical protein NDAI_0C01230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.2e-182  607.4   0.0   1.4e-182  607.2   0.0    1.1  1  ISN1         IMP-specific 5'-nucleotidase
  ------ inclusion threshold ------
       0.04   13.6   0.1       0.15   11.8   0.0    1.9  3  Herpes_UL51  Herpesvirus UL51 protein
      0.081   12.4   0.2       0.15   11.5   0.2    1.4  1  Nop          snoRNA binding domain, fibrillarin
        0.1   13.2   0.9       0.26   11.9   0.9    1.7  1  PEHE         PEHE domain


Domain annotation for each model (and alignments):
>> ISN1  IMP-specific 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  607.2   0.0  3.1e-186  1.4e-182       1     411 []      41     505 ..      41     505 .. 0.95

  Alignments for each domain:
  == domain 1  score: 607.2 bits;  conditional E-value: 3.1e-186
        ISN1   1 mtsryrveyalkshrrdefiewikgllavpfvlhsqseavaeeeekseakvaeevkrryaeilkdvekliddkielq.......kek............ 80 
                 m+sryrvey+lkshr+defi+wikglla+pfvlh+ s+ +++++++++  ++++vk++ya+i+kd+e+li++kie++       + +            
  CCD23784.1  41 MSSRYRVEYHLKSHRKDEFIDWIKGLLAAPFVLHAISNISSQDDNDDDLVTTQRVKSQYADIFKDIERLIQNKIEFDqafqnelE-Ntnndeeenannd 138
                 9*************************************999********************************888855554440.0445566667777 PP

        ISN1  81 ................kkekskLklLvPsigkfftkLpleeaflvedkkraissrrlvaPsfnDvrlilntaqilaltkak......klklvtfDGDvt 157
                                  + ks+L+lLvPsig+fft+Lpleeafl +d ++ is+rr+vaPsfnD+r+ilntaqil+++k++      +lklvtfDGDvt
  CCD23784.1 139 dsdaergdvetkktyaIMGKSRLNLLVPSIGTFFTELPLEEAFLSDDYRKRISARRMVAPSFNDIRNILNTAQILHFIKQRkikngnRLKLVTFDGDVT 237
                 7888888888888888999************************************************************99999999************ PP

        ISN1 158 lydDGksleednpvikrllkllkkdvkvgivtaaGyteaekyeerlkGLldalkaseelteeqkenllvmGgesnylfryseeske....llklveree 252
                 ly+DG sl ++npvi+++lkllk d++vgivtaaGy++a++ye+rlkGL++al++se+lt +qk+nl++mGgesnylfry e++++     + ++e+ee
  CCD23784.1 238 LYEDGGSLFDTNPVIPYILKLLKCDIRVGIVTAAGYDDASTYERRLKGLINALHNSESLTVKQKSNLTIMGGESNYLFRYYENEDQsdsfGFIAIEKEE 336
                 ********************************************************************************99776666678999***** PP

        ISN1 253 WllpemkaWseedikalldvaekalrelakklklp..atilrkeravGivpsek.........evklareqLeevvlvvqkklelseaareikfcafnG 340
                 W+lp m++Ws+++i+++ld+ae++l++l+++l++p  + i+rk+ravGivp ++          vklareqLee+vl++q++le+++++++i+f++f+G
  CCD23784.1 337 WMLPVMEDWSQKNIEMTLDFAERTLTNLKRRLNIPkeVPIIRKKRAVGIVPGRRyderlqsnvPVKLAREQLEEIVLTLQNNLESFPPSNHIQFSCFDG 435
                 ***********************************8899**************99******999*********************************** PP

        ISN1 341 GsDvfvDiGdkslGvevlqkyfgkeekaeikkeetlhvGDqflsa.ganDfkarlaattvWiasPaetvell 411
                 GsDv++DiG+k+lG+++lq+y++ ++   ik++etlhvGDqf+++ +anDfkarla++t+WiasP+etv++l
  CCD23784.1 436 GSDVWCDIGGKNLGITTLQHYYDPTNP--IKPRETLHVGDQFAPMgSANDFKARLAGCTLWIASPQETVDIL 505
                 ************************888..****************789*********************997 PP

>> Herpes_UL51  Herpesvirus UL51 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.3e-05      0.15      25      88 ..      53     119 ..      32     137 .. 0.80
   2 ?   -2.7   0.0      0.94   4.2e+03      42      66 ..     174     198 ..     161     214 .. 0.67
   3 ?   -3.4   0.0       1.6   7.2e+03      10      34 ..     389     414 ..     384     421 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.3e-05
  Herpes_UL51  25 llrlqealaavnallPaPitleda..lasadd.trrlvraqalartyaaclrnleclkrhhpgeenP 88 
                   +r  e +  + +ll aP  l+ +  ++s dd    lv +q +   ya   +++e+l + +  +++ 
   CCD23784.1  53 SHRKDEFIDWIKGLLAAPFVLHAIsnISSQDDnDDDLVTTQRVKSQYADIFKDIERLIQNKIEFDQA 119
                  68999999*************975336777651678**********************999888865 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.94
  Herpes_UL51  42 Pitledalasaddtrrlvraqalar 66 
                   + le+a +s d  +r+   + +a 
   CCD23784.1 174 ELPLEEAFLSDDYRKRISARRMVAP 198
                  5678999998665555544444454 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.6
  Herpes_UL51  10 eey.eevraaspqdeallrlqealaa 34 
                   +y e+++ ++p + a ++l+e + +
   CCD23784.1 389 RRYdERLQSNVPVKLAREQLEEIVLT 414
                  55525688899999999999997654 PP

>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   3.4e-05      0.15      12      57 ..      91     141 ..      82     168 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHTTTSTCHHHHS-SHHHHHHHH.HHCCCCHCCT.HHTT..... CS
         Nop  12 lhkrvrewYswhFpELeslvkdnleYakvv.kligneredlekkee....d 57 
                   +rv+ +Y   F+++e+l+++++e+ ++  ++++n+++d e++++    d
  CCD23784.1  91 TTQRVKSQYADIFKDIERLIQNKIEFDQAFqNELENTNNDEEENANnddsD 141
                 5689**********************9999567776555554442222221 PP

>> PEHE  PEHE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.9   5.8e-05      0.26      35     116 ..       8      84 ..       7     114 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.8e-05
        PEHE  35 RHaklE.ekerkRwdlqrnreqqrreslrqRkeskkgrntpqpgsenpltkqppspddsesihvldevpvvasplpplspell 116
                 RH+k+E ++e++R+   +++ +  r++ r+R    +  n++++ + +   k + +++ + +i+ l   p v + ++++s +++
  CCD23784.1   8 RHNKIEkKEENNRYRQSTTATALIRNRKRSR----E--NMSSRYRVEYHLKSHRKDEFIDWIKGLLAAPFVLHAISNISSQDD 84 
                 9*****8788888888888777777774455....3..445555556666777777777777777788887788888887774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1260  (0.0702772); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3722.77
//
Query:       CCD23785.1  [L=269]
Description: hypothetical protein NDAI_0C01240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2069.32
//
Query:       CCD23786.1  [L=1227]
Description: hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-126  423.0   0.1   1.9e-126  422.3   0.1    1.4  1  RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
    1.1e-73  247.2   0.1    1.8e-73  246.4   0.1    1.4  1  RNA_pol_Rpb2_1  RNA polymerase beta subunit
    3.6e-51  173.5   0.0    7.1e-51  172.5   0.0    1.5  1  RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
    2.6e-34  117.5   0.1    5.9e-34  116.3   0.1    1.7  1  RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
    1.4e-25   89.3   0.3    3.6e-25   88.0   0.3    1.8  1  RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4
    2.3e-24   85.3   0.1    6.4e-24   83.9   0.1    1.8  1  RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
    4.3e-19   68.8   1.1    4.3e-19   68.8   1.1    2.0  2  RNA_pol_Rpb2_5  RNA polymerase Rpb2, domain 5
  ------ inclusion threshold ------
      0.094   13.5   0.1       0.19   12.5   0.1    1.5  1  MRNIP           MRN-interacting protein
       0.14   12.1   0.1       0.27   11.2   0.1    1.5  1  Zn_Tnp_IS1595   Transposase zinc-ribbon domain


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  422.3   0.1  9.7e-130  1.9e-126       2     390 .]     756    1127 ..     755    1127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 422.3 bits;  conditional E-value: 9.7e-130
                      HHT-SS-TTB-HHHHHHHHHHGGGB-S---TTTTT---SSEEEESS----SSB-S.TTTTTS........GGGS-SEEEEEBBBS--TTTTTT CS
  RNA_pol_Rpb2_6    2 aklapvvehvqspriiiqaamekqalgiyslnkfkrsnqktyllcinqkPlvktgdkveagqvldgpatekgelalGqnavVAvmsyeGYniE 94  
                      a+++p+++h+qspr+++q+am+kqa+g+  +n+  r+++  ++l+++qkPl +t+ ++e+++        + el++Gqna+VA+++y+GYn+E
      CCD23786.1  756 ASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTR-AMEYLK--------FRELPAGQNAIVAIACYSGYNQE 839 
                      899****************************************************.******........*********************** PP

                      T-EEEBCHHHHTTTT-EEEEEE..EEE--SSSS-..--.-S--..-.....-SS-GGGS-TTSB--SS-EEETT-EEE---..B-----...- CS
  RNA_pol_Rpb2_6   95 Daiilnerlvdrdvftsihikeyeveardtklge..eeitrdipnv.....seealkkLdedGivrvgaevkegdilvgkvtkgeteltpeek 180 
                      D++i+n++++dr++f+s+++++  ++ +++k g   +e+++++++      ++  ++kLd+dG++ +g +v+ +d+++gk+    t ++p+e+
      CCD23786.1  840 DSMIMNQSSIDRGLFRSLFFRS--YMDQEKKYGMsiTETFEKPQRTntlrmKHGTYDKLDDDGLIAPGVRVSGEDVIIGKT----TPISPDEE 926 
                      **********************..555444433334887888777789999999**************************8....56667777 PP

                      ----------..-B---EE--TT-EEEEEEEEE.......EE-TT--EEEEEEEEEEE---TT-BEEETTS---BBEEEB-TTTSEEETTS-- CS
  RNA_pol_Rpb2_6  181 llraifgekarevkdtslrvksgeegvVdkvkvfsrekgdelkagvnklvkvyvaqkRklqvGDKfasrhGqKGvvslilpqeDmPfledGiv 273 
                      +l + +  ++  ++d+s+ ++s+e+g+Vd+v +       ++++++ k+vkv+v++++ +q+GDKfasrhGqKG++++++++eDmPf+++Giv
      CCD23786.1  927 ELGQRTAYHS--KRDASTPLRSTENGIVDQVLI-------TTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIV 1010
                      7766555444..599******************.......8999************************************************* PP

                      -SEEE-GGGCHHH-BTTHHHHHHHHHCCCSSSS--B--TT-...-HHHHHHHHHTTS-TT-EE-EEETTTS-B-SS-EEB-EEEEEEBS--CC CS
  RNA_pol_Rpb2_6  274 vDivlNPlgvPSRmtigqllEtllgkaaalegkkvdatvFdgakeeeikelLeeagleasGkevlydGrtGekleaeifvGviYylkLkhlve 366 
                      +D+++NP+++PSRmt+++l+E+ll+k+aal+g++ da++F+ ++ e i++lL+e+g++++G ev+y+G tG+kl a+if+G++Yy++L+h+v+
      CCD23786.1 1011 PDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVD 1103
                      *****************************************9999************************************************ PP

                      CS----SS--B-TTT--B-SCGGG CS
  RNA_pol_Rpb2_6  367 dKihaRstGpyslltqQPlgGkaq 390 
                      dKihaR++Gp+++lt+QP++G+++
      CCD23786.1 1104 DKIHARARGPMQVLTRQPVEGRSR 1127
                      **********************86 PP

>> RNA_pol_Rpb2_1  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.4   0.1   8.9e-77   1.8e-73       1     203 []      43     456 ..      43     456 .. 0.99

  Alignments for each domain:
  == domain 1  score: 246.4 bits;  conditional E-value: 8.9e-77
                     CTTHHHHHHHHHHHHTHHHHHCTTSSECCHCSSSHCSSSC......EEEEEEEEEEESCSSECTTSCEEES.HHHHHHCTSBXEEEEEEEEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1   1 gLvsqqldSFnkfveqdlekiikeeaaieseeeiqssgee......lelkfvsirlgkPvvdesdasereiyPkearlrnltYsaplyvklklvv 89 
                     gLvsqqldSFn+fv+++l++ii e++++ +e+ +q+++e+      +e++f++i+++kP+v+esd++++++yP+earlrnltYs+ l+v++k+++
      CCD23786.1  43 GLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESdnisrkYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRT 137
                     69**********************************999999***************************************************** PP

                     CCCC...............TCCEEEEEEEEEEEEEXBTTSTTSSSTTS.HHHHHHTTS.TTS..SSEEETTCEEEEXEEEE.............. CS
                     xxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............. RF
  RNA_pol_Rpb2_1  90 yekd...............nkeeikeeevyiGelPlMlrskacvlseaseeelvelkEcpldqGGyFiinGtekvivaqek.............. 155
                     ye+                +++++++ +v+iG+lP+Mlrsk+c+ls+a+e++l++lkEcp d+GGyFiinG+ekv++aqe+              
      CCD23786.1 138 YEAVdvpgrelkyeliaeeSEDDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGSEKVLIAQERsagnivqvfkkaap 232
                     *8879*************999999*********************************************************************** PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      CCD23786.1 233 spishvaeirsalekgsrfistlqvklygregssartvkatlpyikqdipiviifralgiipdgeilehicydvndwqmlemlkpcvedgfviqd 327
                     *********************************************************************************************** PP

                     .................................................................................XHHHHHHHHHHHHH CS
                     .................................................................................xxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 156 .................................................................................laGeLlaslfrvll 169
                                                                                                      laG+Lla+lf++l+
      CCD23786.1 328 retaldfigrrgtalgikkekriqyakdilqkeflphitqlegfesrkafflgyminrlllcaldrkdqddrdhfgkkrldLAGPLLAQLFKTLF 422
                     *********************************************************************************************** PP

                     HHHHHHHHHHHHHHHCTSSSSSHHHHSCSHHHHH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 170 kklerdvkerlqksleklddlmlqllvnakpita 203
                     +kl++d+ +++q+++e+++d++++l++nak+it+
      CCD23786.1 423 RKLTKDIFRYMQRTVEEANDFNMKLAINAKTITS 456
                     ********************************96 PP

>> RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.5   0.0   3.6e-54   7.1e-51       2     190 .]     221     408 ..     220     408 .. 0.98

  Alignments for each domain:
  == domain 1  score: 172.5 bits;  conditional E-value: 3.6e-54
                     TSCEEEEE-SSSSSE..........SSSCCEECCCEEEEECCCCSTSCEEEEECTTSSSEEEHHHHHHHTT--STTHHHHHHTSSSTTHHHHHHH CS
  RNA_pol_Rpb2_2   2 sngiyvekekdknki..........satvtsslisqrgsvlklekdgktliwtriskkrkipivivlkAlglvsdreIlericydsedsqlleel 86 
                      n+++v+k+++++ i          ++ ++ +++ q +++ ++ ++ +t+ +t++++k++ipivi+++Alg++ d eIle+icyd +d+q+le+l
      CCD23786.1 221 GNIVQVFKKAAPSPIshvaeirsalEKGSRFISTLQVKLYGREGSSARTVKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEML 315
                     599**********************999******************************************************************* PP

                     HHHHHHHCTSSSCHHHHHHHHH.CSSTTSSSCCCCCHHHHHHHCHHHHHHHTTTTSSTTTTTSSSTCHH..HHHHHHHHHHHHHHHHTTSSSS-- CS
  RNA_pol_Rpb2_2  87 leeleekeeiqtqeealdyigk.vvalrrgeearlqsareilqkrydlgeigreklnkhlglseslenkrlkaqdilymidrLlslklgrrevDD 180
                     +++ e+ ++iq++e+ald+ig+ ++al+ ++e+r+q+a++il         ++e l+ h+++ e +e++  ka++++ymi+rLl+++l+r++ DD
      CCD23786.1 316 KPCVEDGFVIQDRETALDFIGRrGTALGIKKEKRIQYAKDIL---------QKEFLP-HITQLEGFESR--KAFFLGYMINRLLLCALDRKDQDD 398
                     *****************************************9.........599999.***********..************************ PP

                     TTSGGGEEEE CS
  RNA_pol_Rpb2_2 181 iDhlgnkRvr 190
                     +Dh+g+kR++
      CCD23786.1 399 RDHFGKKRLD 408
                     ********96 PP

>> RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.1     3e-37   5.9e-34       1      86 [.    1129    1221 ..    1129    1222 .. 0.98

  Alignments for each domain:
  == domain 1  score: 116.3 bits;  conditional E-value: 3e-37
                      BBEEEEHHHHHHHHHHTBHHHHHHHHTTTTTEEEEEEESSSSSCCCEE.......EBTTTTCSSSEEEEEEEHHHHHHHHHHHHTTBEEEEES CS
  RNA_pol_Rpb2_7    1 GGlrfGEMErdaliayGaaalLkerltikSDavevdvcgrckllaaan.......eCkivkseekiekveipeafklLlqeLqslgialklll 86  
                      GGlrfGEMErd++ia+Gaa++Lkerl++ SDa++v+vcg+c+l+++++       eCk ++++ +i +++ip+a+klL+qeL++++i+++l++
      CCD23786.1 1129 GGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHVCGNCGLMSVIAklnhnqfECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYT 1221
                      9********************************************9889*****************************************986 PP

>> RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.3   1.8e-28   3.6e-25       1      62 []     581     642 ..     581     642 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 1.8e-28
                     EECTT-BEEE-S-HCCHHHHHHHHCCTTSS-TT-EEEE-TTT--EEEE-SSEEB-EEEEE-S CS
  RNA_pol_Rpb2_4   1 VfvNGrllGvtrdpkklvetlRelRRkgkiseevsivlnekqkevkiatDgGRvcRPliiVe 62 
                     VfvNG++ Gv+r+p++l++tlR+lRRkg+i++evs+++++++ke+ki+tD+GRv RPl+iVe
      CCD23786.1 581 VFVNGVWHGVHRNPARLMDTLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVE 642
                     9************************************************************8 PP

>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.1   3.2e-27   6.4e-24       1      66 [.     482     544 ..     482     546 .. 0.97

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 3.2e-27
  RNA_pol_Rpb2_3   1 qvldrlnplselshlrrvsslrgglskerkttevRdlhpshwGriCpveTPEGencGlvksLalla 66 
                     qvl+r+++ s+lshlrr +++   + ++ k +++R+lh++hwG +Cp+eTPEG+ cGlvk+L+l++
      CCD23786.1 482 QVLNRYTYSSTLSHLRRTNTP---IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMS 544
                     89*******************...****************************************97 PP

>> RNA_pol_Rpb2_5  RNA polymerase Rpb2, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   1.1   2.2e-22   4.3e-19       1      58 []     682     748 ..     682     748 .. 0.86
   2 ?   -3.2   0.1       6.9   1.4e+04      18      34 ..    1137    1153 ..    1135    1160 .. 0.70

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 2.2e-22
                     HHHHHHTTSEEEEEHHHHTT--EESSTTTCSST.-SSTTTSS-...........-TTSSSST-SEEES-G CS
  RNA_pol_Rpb2_5   1 wddLlregvvEylDaeEEetamIamtpedleks.reekealee...........kenskshtyTHcEIhP 58 
                     w++Ll+eg+vEy+DaeEEet++Iam+pedle    +e+e               ++ ++++t+THcEIhP
      CCD23786.1 682 WTSLLNEGLVEYIDAEEEETILIAMQPEDLEPPaVNEDE---PmvddldpakriRAVQHATTFTHCEIHP 748
                     9*****************************999444443...13579*****996667777********9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.9
                      HTT--EESSTTTCSST- CS
  RNA_pol_Rpb2_5   18 EetamIamtpedleksr 34  
                      E ++mIa     + k+r
      CCD23786.1 1137 ERDCMIAHGAASFLKER 1153
                      88999998776666554 PP

>> MRNIP  MRN-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   9.5e-05      0.19       3      53 ..    1165    1215 ..    1163    1225 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 9.5e-05
       MRNIP    3 rCysCetfqvkqvkKskkwkCkvCnekqslkkvygsgsgkdcrqlVqklnl 53  
                   C +C ++ v  +   ++++Ck C++k  + +++  +++k + q  +++n+
  CCD23786.1 1165 VCGNCGLMSVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNI 1215
                  599******************************999999888777777776 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00014      0.27      19      44 ..    1164    1189 ..    1146    1191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00014
  Zn_Tnp_IS1595   19 fvCPhCgsr.kayriktrglfqCkeCr 44  
                     +vC +Cg +  + ++++  +f+Ck C 
     CCD23786.1 1164 HVCGNCGLMsVIAKLNH-NQFECKGCD 1189
                     68*******99999999.********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 8370.40
//
Query:       CCD23787.1  [L=170]
Description: hypothetical protein NDAI_0C01260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-47  159.6   0.2    5.1e-47  159.2   0.2    1.1  1  Ribosomal_L13  Ribosomal protein L13


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   0.2   2.9e-51   5.1e-47       2     121 ..      16     138 ..      15     140 .. 0.96

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 2.9e-51
                    EEEEE.ETTS.BHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SSTTSEEEEEHHHHHCCSH.HHHHHHHHHC CS
  Ribosomal_L13   2 WyviD.Aegq.vlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgypgglkevtakellekkp.eeilekaVkg 94 
                    W+++D A+++ +lgr+as ia +L+Gkhkp ++p++dcGdyvvv+n++k+++tgkk+eqk+y++ht +pg+lk  t+++++++k   e+l+kaV+g
     CCD23787.1  16 WHHVDlAQDKrTLGRVASAIAITLMGKHKPVFHPSQDCGDYVVVTNCQKLRVTGKKMEQKTYWSHTSRPGSLKLKTMETIVANKGyGEVLRKAVSG 111
                    *****9887769*******************************************************************99887769********* PP

                    CS-SSHHHHHHGCTEEEESSSTTSGGG CS
  Ribosomal_L13  95 mLpknklgrrrlkrLkvyageehphea 121
                    mLpknkl++ rl+rLkv++g+ehp+++
     CCD23787.1 112 MLPKNKLRKPRLERLKVFDGSEHPYTN 138
                    ************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       273  (0.0152267); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1286.48
//
Query:       CCD23788.1  [L=622]
Description: hypothetical protein NDAI_0C01270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-56  191.9  24.7    4.8e-40  137.7   4.7    4.3  4  MDM31_MDM32  Yeast mitochondrial distribution and morphology 
     0.0042   16.9   1.8     0.0084   15.9   0.0    2.2  2  TadF         Putative tight adherence pilin protein F


Domain annotation for each model (and alignments):
>> MDM31_MDM32  Yeast mitochondrial distribution and morphology (MDM) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.3   1.7e-06     0.015      32     115 ..     129     222 ..     119     230 .. 0.72
   2 !  137.7   4.7   5.3e-44   4.8e-40     163     353 ..     230     412 ..     222     418 .. 0.89
   3 !   26.5   0.4   2.8e-10   2.5e-06     403     457 ..     414     473 ..     410     487 .. 0.83
   4 !   28.2   0.4   8.4e-11   7.5e-07     450     524 ..     545     617 ..     542     618 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-06
  MDM31_MDM32  32 addisafvswlllgnvlwil.....lgtTtfvslvilli.ntvfaq.etlakkigdy...ltkstgvkvvFEsaivpkwkdgkisfknvfvsrr 115
                  +  + + + wl++g + +++     + t t  sl+  +i n vf q  +l +ki +      ++  +++ F +a + +wk++ i+f +v+++  
   CCD23788.1 129 TSSMVSRLCWLIFGSITLFItlpyaMDTDTVKSLINKTIhNAVFIQlRHLNNKINSSphsADHKLRINLKFNKASICDWKQNLIKFDDVMITVA 222
                  4455566678888888777644444567888888876662567777778999997642114556788999********************9765 PP

  == domain 2  score: 137.7 bits;  conditional E-value: 5.3e-44
  MDM31_MDM32 163 dltidtvdvtLsfakwlngkGllkdvevkGvrGvvdrthvkwkeeeldpksyrhehqpgdfelesfkledvlvtvyqpegfrpfkvsifscdlpqLRk 260
                  + +i +v ++Ls++kw+ng+Gl++dv++ G+   +     ++++  +++   ++  q  ++e+ ++k++d+++++ ++      k sif+++l++LR 
   CCD23788.1 230 NCKIYQVTISLSIKKWFNGNGLVNDVSIFGLESDLTSIDNSFDD--NNNGLIEQFIQCSNYEFGTVKINDSFLKLNEK------KFSIFNLELNKLRL 319
                  57899**************************9876666555555..6888899999*******************998......789*********** PP

  MDM31_MDM32 261 qwlfyDflsAnnvsGsfdnslFtiHkrqs.lekeeeekeeeaskwkklsrlridglnidhlnrgvegpfsWiteGkvdivaDimlPededelsl 353
                   +l++Dfl+A+ ++Gs++nslF++Hkrq+ l++ ++ +++ + + +k++r+r++ +n+++l  + +   +Wi++G+v+i++D+mlP+++d+ ++
   CCD23788.1 320 SKLLLDFLNATVITGSINNSLFSLHKRQHkLTNLNDVRKDLSPSFQKITRIRLNTINVNDLGLSKTKSYNWIKDGNVEIILDMMLPQNDDH-TI 412
                  ****************************9555666666666689*******************************************8876.55 PP

  == domain 3  score: 26.5 bits;  conditional E-value: 2.8e-10
  MDM31_MDM32 403 keeeeeekyvvvdlklklndvkAavP.....lftkdlsyvnnaliRpivayiNskrtyip 457
                  +++++++ky+++dlk k++d+kA++P     l t++ + ++   ++p+++yiN +r +++
   CCD23788.1 414 TSTRNQNKYMIMDLKFKFKDLKAHLParppsLPTTNEPIISLEELKPVIGYINLQRILVN 473
                  566789********************66666666666677777789********998875 PP

  == domain 4  score: 28.2 bits;  conditional E-value: 8.4e-11
  MDM31_MDM32 450 NskrtyipikcrvvkklsdfdgswtvydsgLmddlsaevYealakdvadeearkrrlkkvglWslqlavqalllg 524
                  N+ ++ i ++c++vk++ df++     ++g+ d+l+ e Y++l++ v++ e ++ +   ++ W  ++a q+ll+g
   CCD23788.1 545 NNDNE-IILNCKIVKNMVDFENKISFKQTGIYDQLTLELYDDLTRIVEEWEYKN-KNDWINQWGTTFASQLLLFG 617
                  55554.669***************************************998877.7799*************998 PP

>> TadF  Putative tight adherence pilin protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.4e-07    0.0084      88     167 ..     168     248 ..     155     263 .. 0.84
   2 ?   -1.0   0.4      0.14   1.3e+03      88     149 ..     484     541 ..     466     596 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.4e-07
        TadF  88 dkkigvvleelkfegstqrkeiektskeissaqgtseCkpaksltelkslsplses.kinerkapLYqVTvCvetdnlfks 167
                 ++ + ++l +l+ + +  +++++++ +   +++ +s C+ +++l + +++    ++ ++n+ + ++YqVT+ +  +++f++
  CCD23788.1 168 HNAVFIQLRHLNNKINSSPHSADHKLRINLKFNKASICDWKQNLIKFDDVMITVAQeHGNDLNCKIYQVTISLSIKKWFNG 248
                 566778888888887777789999999999**************999998777776689********************86 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.14
        TadF  88 dkkigvvleelkfegstqrkeiektskeissaqgtseCkpaksltelkslsplseskinerk 149
                 ++  +++l++   ++ +   +i+ ++  +++++++++ + +++ +e+++ +  +++  +++ 
  CCD23788.1 484 TSSTYITLNSPMWNSPN--VSIQRKKSMLMNNNNSNKNNNHTNTSEKNNSTIIKNN--DNKG 541
                 55555555555555111..2344444555555555555555554444444444443..4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1450  (0.0808746); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 4551.27
//
Query:       CCD23789.1  [L=226]
Description: hypothetical protein NDAI_0C01280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-18   65.1   0.1    4.4e-18   65.1   0.1    2.6  3  G-patch_2  G-patch domain


Domain annotation for each model (and alignments):
>> G-patch_2  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.5       0.2   3.6e+03      37      44 ..      18      25 ..       5      34 .. 0.46
   2 !   65.1   0.1   2.5e-22   4.4e-18       4      60 ..     111     174 ..     108     175 .. 0.88
   3 ?   -2.2   0.4      0.26   4.7e+03      31      43 ..     180     192 ..     177     195 .. 0.50

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.2
   G-patch_2 37 kkgrvkpe 44
                 k++vk +
  CCD23789.1 18 TKSKVKKK 25
                22222222 PP

  == domain 2  score: 65.1 bits;  conditional E-value: 2.5e-22
   G-patch_2   4 asleeyeevPVeeFGaAlLrGMGWkegqgigknkkgr.......vkpeepkrRpgrlGLGakpa 60 
                 +  ++y  vPVeeFG AlLrGMGW+ +++++k+k +r         p+e + +p++lG+Gakp 
  CCD23789.1 111 PHEDQYIDVPVEEFGKALLRGMGWNSDEENEKEKRERlqrkkkqRLPHELQSHPDGLGIGAKPI 174
                 56789********************888888888888888888899****************96 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.26
   G-patch_2  31 qgigknkkgrvkp 43 
                 +++++++k+r+++
  CCD23789.1 180 KNKKNDSKSRTQE 192
                 4455555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1663  (0.0927548); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 1784.15
//
Query:       CCD23790.1  [L=513]
Description: hypothetical protein NDAI_0C01290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-71  239.8  34.2    7.5e-71  239.5  34.2    1.0  1  Glyco_transf_22  Alg9-like mannosyltransferase family
  ------ inclusion threshold ------
      0.091   12.7   1.3       0.32   10.9   0.0    2.5  2  PDR_CDR          CDR ABC transporter
       0.94    9.0  15.5        3.3    7.2   0.6    4.2  4  DUF368           Domain of unknown function (DUF368)


Domain annotation for each model (and alignments):
>> Glyco_transf_22  Alg9-like mannosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.5  34.2   1.3e-74   7.5e-71       5     416 ..       9     409 ..       6     410 .. 0.89

  Alignments for each domain:
  == domain 1  score: 239.5 bits;  conditional E-value: 1.3e-74
  Glyco_transf_22   5 lllalrlllalltqtsfdpDEffqslEva.hklvfgkgtltWEyspkygiRSylfllllalpyrllaelvadskiav...lyapRlllallsal 94 
                      +l+ + ++ al ++++ +pDE+fqslE++  ++++ kgt++WE+++  + RS ++l+l++ p++ + +   d ++ +   ly  Rl+ +++++ 
       CCD23790.1   9 FLYLIGIIIALQPSYI-HPDEHFQSLEILtIRFFNIKGTIPWEFQSINPARSFVPLYLFYGPLFYFLKHAIDVHKNPliiLYSSRLYTYIIYI- 100
                      6788899999988777.*************************************************999999999887779999998888775. PP

  Glyco_transf_22  95 idyylfravcrkygseiakialllslsswglfvfstrtfsnslemlltsialyllsellsrenksssnekylvavlliavlavliRptsallwl 188
                      i ++++ + +++  ++ +k+ ++++lss+++++++++tfsns e+++++++l+l++++ls++ + + n + ++ + ++  ++ ++R t+  ++l
       CCD23790.1 101 ITLKFYLKNNNNTKKN-RKLGFIIILSSYVTWTYQSHTFSNSTETIILLLVLSLYEKILSEHHTTTNNTRLSILLGCLISIGTFNRMTFGSFIL 193
                      5566666567776666.9**************************************************************************** PP

  Glyco_transf_22 189 plvlflllrlvkkrsktf.lfliialvllvlllvlvlviliDslfY..........gkfvftplnflkyNvlsnlsslyGvhPwyfYllqnlpn 271
                      +++l+l++++++k+ +   l  +i     ++ +v++l+i iDs++Y           k+++tpln++kyN+++++ sl+G+h++y++ll nlp+
       CCD23790.1 194 LPSLKLFIQFYSKKANWKyLLYLI----TSFTIVSFLSIQIDSILYhdnytltvdpTKWIITPLNNIKYNLNESNLSLHGLHSRYTHLLINLPQ 283
                      **********99976655333333....4444555569******************************************************** PP

  Glyco_transf_22 272 ilgvlllavllgllvllsrkvsrlllllltilltLlvysllpHKElRFllpvlPlillsaavlltrlsresakvskklsllvllllfnvvlall 365
                      i+g+l+l++   ++++     +  +l +l i+ tLl++s ++H+ElRFl+p++Pli++s  + ++ l   ++++ kk  +++ +++fn+++ ++
       CCD23790.1 284 IIGPLFLIFPYIIIKTW----K--SLSTLSIVSTLLILSSFKHQELRFLIPLTPLIITSVIISIKDLHIIRSTKVKK-LIVIQWIIFNLIMGII 370
                      ***************94....2..5789***************************************8444444444.6*************** PP

  Glyco_transf_22 366 lglvhqagvillvevmseleetkrknrkekketssvyvlkecyrtPsssyl 416
                      +g++hq+g+i   + m e +  + + r          +++++y+ P++ y+
       CCD23790.1 371 VGIFHQSGII---PIMMENSRANSTSR---------EIWWKTYSPPTWLYM 409
                      **********...77765555542222.........599***********9 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.4      0.33     2e+03      51      67 ..     355     371 ..     345     377 .. 0.84
   2 ?   10.9   0.0   5.4e-05      0.32      21      61 ..     470     510 ..     459     513 .] 0.89

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.33
     PDR_CDR  51 giliaflifflalylla 67 
                  i+i ++if l++ +++
  CCD23790.1 355 LIVIQWIIFNLIMGIIV 371
                 59999999999998876 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.4e-05
     PDR_CDR  21 GavpGqeyVsGddYlelsfgyssshlwrnfgiliafliffl 61 
                 G ++   +++G++Y+e++  ys+ hl  + gi+++  +f +
  CCD23790.1 470 GVENEFLTLNGTIYIEETNVYSWRHLDLDHGITFGLSVFNV 510
                 556667899**************************999976 PP

>> DUF368  Domain of unknown function (DUF368)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.2   0.00091       5.4     161     201 ..     146     186 ..       6     199 .. 0.83
   2 ?   -1.7   0.0      0.29   1.7e+03      50      74 ..     206     230 ..     190     243 .. 0.61
   3 ?    2.5   0.6     0.015        89      32      81 ..     303     350 ..     293     358 .. 0.78
   4 ?    7.2   0.6   0.00055       3.3      54      84 ..     359     389 ..     338     394 .. 0.56

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00091
      DUF368 161 fiLlllGlYelllealkeldvkvllvfllGavvGllsfsrv 201
                 ++Ll+l lYe +l++ ++   ++ l +llG+++ + +f r+
  CCD23790.1 146 ILLLVLSLYEKILSEHHTTTNNTRLSILLGCLISIGTFNRM 186
                 47899999*****9999999999999999**9999999986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.29
      DUF368  50 kkinlkfLlalvlGivvsilvlakl 74 
                 kk+n+k Ll l++   +  ++  ++
  CCD23790.1 206 KKANWKYLLYLITSFTIVSFLSIQI 230
                 4677777777777665555444444 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.015
      DUF368  32 inlealklllrarlkaalkkinlkfLlalvlGivvsilvlakllsyllek 81 
                 +  ++l ++ +  + + +k+ +l fL++l   i++s+++  k l+++  +
  CCD23790.1 303 L--STLSIVSTLLILSSFKHQELRFLIPLTPLIITSVIISIKDLHIIRST 350
                 4..66777777788899999999999999999999999999988887655 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.00055
      DUF368  54 lkfLlalvlGivvsilvlakllsyllekypi 84 
                  ++++ l++Gi+v+i+  + ++ +++e+ + 
  CCD23790.1 359 QWIIFNLIMGIIVGIFHQSGIIPIMMENSRA 389
                 2345666666666666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       959  (0.0534888); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3888.97
//
Query:       CCD23791.1  [L=158]
Description: hypothetical protein NDAI_0C01300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-12   45.1   0.3    1.4e-11   44.5   0.3    1.3  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0052   17.2   0.1     0.0081   16.6   0.1    1.3  1  DUF2960        Protein of unknown function (DUF2960)
  ------ inclusion threshold ------
      0.032   14.2   1.0      0.045   13.7   1.0    1.3  1  Lig_C          Ligase Pab1020 C-terminal region
      0.035   14.4   0.3      0.046   14.0   0.3    1.1  1  ToxN_toxin     Toxin ToxN, type III toxin-antitoxin system
       0.19   12.1   0.1       0.19   12.1   0.1    2.2  2  Histone        Core histone H2A/H2B/H3/H4


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.3     4e-15   1.4e-11       2      65 .]       9      73 ..       8      73 .. 0.98

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 4e-15
                   XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                    LP a+v+k++ +  +++  + k+ +e+i ++ +efi  l+s+A+e ++ e +Kti++eh+ +A+
     CCD23791.1  9 TLPRATVQKMISEVlDSDLSFGKEGREIIIQSGVEFIMILSSMASEMAENEAKKTIAPEHVIKAL 73
                   69************999999******************************************997 PP

>> DUF2960  Protein of unknown function (DUF2960)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   2.3e-06    0.0081      30      78 ..      70     118 ..      60     119 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.3e-06
     DUF2960  30 vAaaEgidlteflameqQlamiskdkkavkdfrdneFaklGFskiklvr 78 
                 + a E+++ +ef    +Q+ +  k+++ vk+ rd++F+k G s+ +l+r
  CCD23791.1  70 IKALEELEFNEFIPFLEQVLVEFKGSQKVKEKRDSKFKKSGLSEEELLR 118
                 56779************************************99877766 PP

>> Lig_C  Ligase Pab1020 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.0   1.3e-05     0.045      46     109 ..      47     108 ..      44     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHTT---EEEEEEE-SSHHHHHHHHHHHHCTT--EEEEEEE..TTEEEEE..E CS
       Lig_C  46 iLepmvetikkvkeeekvkeefrvrfkdeenieellehLrrlgvkaeveekekedgelvvkfkk 109
                 iL++m + + + +++++++ e+ ++  +e +++e++ +L+++ v+++ ++k ke  ++  kfkk
  CCD23791.1  47 ILSSMASEMAENEAKKTIAPEHVIKALEELEFNEFIPFLEQVLVEFKGSQKVKE--KRDSKFKK 108
                 99***************************************9999998877755..33335555 PP

>> ToxN_toxin  Toxin ToxN, type III toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   1.3e-05     0.046      44     127 ..      43     135 ..      34     151 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
  ToxN_toxin  44 kYfvplssakekhkkmknnvdfikike.kkkkllgalnlnnMiPvpdevleeldinke....eke.......kykdLLqkelkfinknkekilkka 127
                 ++++ lss     ++m +n     i   +  k l  l++n+ iP  ++vl e++ +++    +++       + ++LL+++ ++ +k ++k+++++
  CCD23791.1  43 EFIMILSSMA---SEMAENEAKKTIAPeHVIKALEELEFNEFIPFLEQVLVEFKGSQKvkekRDSkfkksglSEEELLRQQEELFRKSRSKLHQNS 135
                 5666666665...33444433333332247778999*****************9999865552224444455677777777777777766666654 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   5.2e-05      0.19      56     128 ..       4      73 ..       2      74 .. 0.88
   2 ?   -0.8   2.2       0.5   1.8e+03      17      42 ..     119     144 ..      93     158 .] 0.54

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.2e-05
                 HXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHH CS
     Histone  56 kstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlAr 128
                 +s+d   +++ +++++ e+     +dl++ +e  +++ +    +++ l ++A+ +a++  ++Ti p+++  A+
  CCD23791.1   4 DSEDVTLPRATVQKMISEVLD---SDLSFGKEGREIIIQSGVEFIMILSSMASEMAENEAKKTIAPEHVIKAL 73 
                 578888899999999999997...9********99887777778999*********************98875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.5
                 XXXXXXXXXHTTS-SSSSB--TTT-X CS
     Histone  17 pekkvsakkerkasskskkkkkrryr 42 
                 +++++++k+++k +++s+++++  ++
  CCD23791.1 119 QQEELFRKSRSKLHQNSITSETAPPN 144
                 34444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1396  (0.0778627); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1187.28
//
Query:       CCD23792.1  [L=265]
Description: hypothetical protein NDAI_0C01310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   13.7   0.0       0.14   12.0   0.0    1.9  1  PDR_CDR   CDR ABC transporter


Domain annotation for each model (and alignments):
>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     8e-06      0.14      42      78 ..     117     153 ..     110     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8e-06
     PDR_CDR  42 ssshlwrnfgiliaflifflalyllatelisaekskg 78 
                 ++ +lw +++ +i+f+ ff+ ++l +++l+++ +++ 
  CCD23792.1 117 KEPNLWTDYVFIIVFMGFFFGCQLGFLTLLNSREEEE 153
                 5668********************9988877665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1523  (0.0849462); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2089.09
//
Query:       CCD23793.1  [L=261]
Description: hypothetical protein NDAI_0C01320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1512  (0.0843326); expected 358.6 (0.02)
Passed bias filter:                      703  (0.0392102); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1970.21
//
Query:       CCD23794.1  [L=660]
Description: hypothetical protein NDAI_0C01330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-18   66.8   4.4    4.2e-18   65.6   4.4    1.6  1  Utp12     Dip2/Utp12 Family


Domain annotation for each model (and alignments):
>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   4.4   2.3e-22   4.2e-18       1     103 [.     463     563 ..     463     567 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 2.3e-22
                 HHHHHHH.HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH.HTTTTHHHHHHHHHHHHHHHHHHHHHSH.HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Utp12   1 ndeelleevlekippsdirltvlrLpssyvlkLLeflaerlaeksphlelllrwlkallrvHgsylvaspsdlvpaLrslqkslrerlktlskllglnl 99 
                 nd++lle+vl++++++ i++t+ rL ++++  LLe l+e ++++s++  +l +w+k+++ +Hg+y+++ p+ l+ +L+sl+ +l++++++l++ll+l  
  CCD23794.1 463 NDHSLLETVLNNRNEKIIKETIIRLNPKLAIILLEKLSEKISRNSNRSLTLNHWIKWCIIIHGAYFTNVPN-LNHVLNSLYVVLKRKAQLLPRLLALE- 559
                 8*********************************************************************8.************************99. PP

                 HHHH CS
       Utp12 100 grLd 103
                  rLd
  CCD23794.1 560 IRLD 563
                 7776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1795  (0.100117); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 4579.18
//
Query:       CCD23795.1  [L=790]
Description: hypothetical protein NDAI_0C01340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-05   23.0   0.1    0.00081   19.8   0.0    2.5  2  AAA       ATPase family associated with various cellular acti


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.13   2.4e+03      46      69 ..      93     117 ..      68     138 .. 0.68
   2 !   19.8   0.0   4.5e-08   0.00081       9      91 ..     365     444 ..     359     449 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.13
                 HHHHHHHH.HHTSTSEEEEEETGGG CS
         AAA  46 irelfkea.kekakpsilfiDEida 69 
                 +++++ +   ek++p i+ iD+ d+
  CCD23795.1  93 VQNFLMNRpTEKKEPIIISIDDGDE 117
                 4444444313333699****99886 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 4.5e-08
                 SSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS.....TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHH CS
         AAA   9 tGKTllakavakelgvefleisgsellskyvgesekkirelfkeakeka.....kpsilfiDEidalaksrsgseseeeervvnqLlt 91 
                 +GK +l++ ++++l+ +++e++ se +    ++  +k++e+ ++          ++ ++++D++d l+k+    ++ + + v ++Llt
  CCD23795.1 365 VGKNTLVEVIMRDLDCQIFEVNSSENR--SRKDILDKLSEFATTH---YvkghgSKGVILFDDVDVLFKEH---DKLFWQAVEKTLLT 444
                 8**************************..3344444444444443...14447667************999...66666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1042  (0.0581181); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5568.35
//
Query:       CCD23796.1  [L=328]
Description: hypothetical protein NDAI_0C01350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-31  108.0   2.7    3.9e-30  104.4   2.7    2.1  1  TPK_catalytic   Thiamin pyrophosphokinase, catalytic domain
    6.2e-12   45.1   0.4    1.7e-11   43.7   0.4    1.7  1  TPK_B1_binding  Thiamin pyrophosphokinase, vitamin B1 binding
  ------ inclusion threshold ------
      0.085   12.9   0.8       0.17   11.9   0.8    1.5  1  DUF1027         Protein of unknown function (DUF1027)
       0.09   13.0   0.4       0.23   11.7   0.4    1.7  1  GABP-alpha      GA-binding protein alpha chain


Domain annotation for each model (and alignments):
>> TPK_catalytic  Thiamin pyrophosphokinase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   2.7   8.8e-34   3.9e-30       3     114 ..      61     221 ..      59     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 104.4 bits;  conditional E-value: 8.8e-34
  TPK_catalytic   3 qlwknaslrvcaDgGanrly........eeekerlellpdvivGDlDSirpevkefyeskgteivkkpdqdstDlekai.........alvlekek 81 
                    ++w+ +++rvcaDgGanrly        e+e er+  lpd+i+GDlDS++ ev+++ye+kg+ i++++ q+stD++k++         +       
     CCD23796.1  61 EIWNTHHIRVCADGGANRLYeyfqddedEDEVERSLHLPDYIIGDLDSLKMEVRKYYEDKGVVIIQQNTQYSTDFTKTVnlvslhyfsT------- 149
                    78***********************998888899999******************************************5555555550....... PP

  TPK_catalytic  82 edk.........................................nksivvlgalggRfDhtlaninvllklkkk 114
                      k                                         + +++ lg++ggRfD+++++i++l+ l+++
     CCD23796.1 150 --KfkdiiavqnstaknhgigiecgihdlynelmkngdsvmkfnKINLLALGGIGGRFDQSIHSITQLYILEQT 221
                    ..4555555555555555566666666666666666667788878899999******************88665 PP

>> TPK_B1_binding  Thiamin pyrophosphokinase, vitamin B1 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.4   3.7e-15   1.7e-11      15      68 ..     259     312 ..     251     314 .. 0.85

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 3.7e-15
                     EEEEEESSSSEEEEEEESBSS-EEEEEESTTC.ETEEEEEBS.SSEEEEEEESBS CS
  TPK_B1_binding  15 yvgliPlggevtglttkGlkwnledwelefgg.llstSNeveeeeeavtietdsg 68 
                     ++gl+Plgg  + ++t+Glkw++++w++++ +  +s+SN +++  +++ i++++ 
      CCD23796.1 259 NCGLLPLGGMTKIIETQGLKWDVTNWNTSVSSgKVSSSNRFVG-IDGCFINCKDS 312
                     7*******999*******************5559*******94.44567777765 PP

>> DUF1027  Protein of unknown function (DUF1027)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   3.7e-05      0.17      15      82 ..      81     147 ..      76     150 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.7e-05
     DUF1027  15 dafdeeeleeryseildkydYivGDigyekLRLkGFykdenkkakkdnkisaledYlkeycnfgcayF 82 
                 + f+ +e e++++  l+  dYi+GD+ + k+ ++ +y+d+   +  ++++++ +d+ k +  +  +yF
  CCD23796.1  81 EYFQDDEDEDEVERSLHLPDYIIGDLDSLKMEVRKYYEDK-GVVIIQQNTQYSTDFTKTVNLVSLHYF 147
                 5677777788888899999********************9.777777888888888887766666776 PP

>> GABP-alpha  GA-binding protein alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   5.2e-05      0.23      59      84 ..      16      40 ..       8      41 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.2e-05
  GABP-alpha 59 qinvqvksekeekkrinIvdvlkPvd 84
                +in+qv  +k  k rin+ ++lkP+d
  CCD23796.1 16 RINIQVPENK-FKTRINVENILKPMD 40
                69****9977.588**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       639  (0.0356406); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2467.06
//
Query:       CCD23797.1  [L=329]
Description: hypothetical protein NDAI_0C01360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-26   92.6   2.3      2e-26   92.5   0.4    1.9  2  CoA_binding    CoA binding domain
    1.3e-23   83.5   0.5    2.5e-23   82.6   0.5    1.4  1  Ligase_CoA     CoA-ligase
    2.6e-06   27.3   0.0    4.6e-06   26.5   0.0    1.4  1  Succ_CoA_lig   Succinyl-CoA ligase like flavodoxin domain
    0.00021   21.8   0.0    0.00053   20.5   0.0    1.7  2  CoA_binding_2  CoA binding domain
  ------ inclusion threshold ------
      0.024   14.2   0.0       0.16   11.6   0.0    2.0  2  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind


Domain annotation for each model (and alignments):
>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.4   5.5e-30     2e-26       2      96 .]      36     128 ..      35     128 .. 0.99
   2 ?   -1.0   0.1      0.82     3e+03       5      39 ..     178     212 ..     174     225 .. 0.60

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 5.5e-30
                  TTEEEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TTTTTCEETTEEEESCHHHHHHHCTTTEEEEES-HHHHHHHHHHHHHTT-SEEEEESST CS
  CoA_binding   2 kdtkviviGagglgiaglyhfkeklkygikavfgvnprkvgtevlglpvyksvdeleektevdvavitvPaesaqeavdelveagikgiviiteg 96 
                  k+tkvi +G++g+  +g +h k   +yg+++v+g+np+k+g+ ++g pv+ +v+e++++t+++++ i++P+++a++a++e++ea+ +++v+iteg
   CCD23797.1  36 KETKVIFQGFTGK--QGSFHAKISQEYGTNVVGGTNPKKAGQLHQGKPVFSTVSEAIKETGATASAIFIPPPFAAAAIKEAIEAELPLAVCITEG 128
                  79***********..******************************************************************************97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.82
                  EEEEETTTSHHHHHHHHHHHHHHECEEEEEEC-TT CS
  CoA_binding   5 kviviGagglgiaglyhfkeklkygikavfgvnpr 39 
                  k+++i  +g+ + +++++  + + g + v+g +++
   CCD23797.1 178 KIGIISRSGTLTYEAVQQTTNTGLGQSLVIGMGGD 212
                  55565556666666666666666666666665554 PP

>> Ligase_CoA  CoA-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.5     7e-27   2.5e-23       1     150 [.     182     307 ..     182     309 .. 0.97

  Alignments for each domain:
  == domain 1  score: 82.6 bits;  conditional E-value: 7e-27
                 EESSHHHHHHHHHHHHHT..............T--BSEEEE-TSS--..........HHHHHHHHHHHHS-TT-SEEEEEEEESSSEHHHHHHHHHHHH CS
  Ligase_CoA   1 lvnGGtLayeamdlikealgdvasnkklknvlgseqheiidlGddaftkGrpHPmiDptkriealkklaadpevkvilldivlGygahedpaaellkai 99 
                 ++++GtL+yea+++++++              g +q+ +i++G+daf+         +t++i+al+ +++d  +++i+l +++G g++e +aa++lk++
  CCD23797.1 182 ISRSGTLTYEAVQQTTNT--------------GLGQSLVIGMGGDAFP---------GTDFIDALQLFLNDGVTEGIILLGEIG-GKAEIEAAQYLKEF 256
                 689***************..............***************9.........***************************.************** PP

                 HHTT...--S-EEEEEECTTHH.......HHHHHHHTTTSSEEE-SSHHHHHH CS
  Ligase_CoA 100 keakaegrelpvvarvaGtead..pqelseqakaleeagveiasskaqalraa 150
                 ++ k  +++lpv +++aGt a   ++ ++++++a+ e++ + a+sk++alr  
  CCD23797.1 257 NNSK--SNPLPVASFIAGTVAGqmKGVRMGHSGAIVEGSGTDAESKKKALREV 307
                 ***9..***************988899**********************9976 PP

>> Succ_CoA_lig  Succinyl-CoA ligase like flavodoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.3e-09   4.6e-06       2     127 ..     177     314 ..     176     322 .. 0.76

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.3e-09
  Succ_CoA_lig   2 GkialisqSGalalalldwaasrglgfskvvslGnea..dvdvadlleylaedpetkvillylEsird....grkflsaarraark.kpvvvlksGr 91 
                   Gki++is SG+l  + ++++++ glg s v+ +G  a   +d+ d l+ + +d  t+ i+l  E  ++    ++++l+   + + +  pv  + +G+
    CCD23797.1 177 GKIGIISRSGTLTYEAVQQTTNTGLGQSLVIGMGGDAfpGTDFIDALQLFLNDGVTEGIILLGEIGGKaeieAAQYLKEFNNSKSNpLPVASFIAGT 273
                   9*********************************9885579********************999776644445666666666667777888888887 PP

  Succ_CoA_lig  92 .seagaraaashtgala....gsdavvdaafrqaGvlrvds 127
                      + +   + h+ga++    ++ +  ++a+r++G+ +v+s
    CCD23797.1 274 vAGQMKGVRMGHSGAIVegsgTDAESKKKALREVGIEVVES 314
                   32333334467777776322235566677788888777776 PP

>> CoA_binding_2  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.5e-07   0.00053      33     115 ..      68     159 ..      44     160 .. 0.77
   2 ?   -3.2   0.0       3.3   1.2e+04      89     106 ..     295     312 ..     279     317 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.5e-07
                    ESSS-..SEETTEES----T......T--EEEE-S-HHHHGGGHHHHHHH-.-SEEEE-TT---HHHHHHHHH....TT-EEE.ES-HHHHH CS
  CoA_binding_2  33 Vnpke..eeilgekvyaslae.d.pepvdlvdvftppeatpeivkealalg.akavwlqpgsedeeaaelaee....agirvvgdrCilveg 115
                     npk+  +  +g++v+ +++e   ++   +  +f+pp  +++ +kea++++ + av + +g+ +++++ + e     ++ r+vg++C+++++
     CCD23797.1  68 TNPKKagQLHQGKPVFSTVSEaIkETGATASAIFIPPPFAAAAIKEAIEAElPLAVCITEGIPQRDMLYINEMlqnqNKTRLVGPNCPGIIN 159
                    47887756667899******854777788999***************88874666777777777777766666778899**********986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.3
                    ---HHHHHHHHHTT-EEE CS
  CoA_binding_2  89 sedeeaaelaeeagirvv 106
                    +  e   ++++e gi+vv
     CCD23797.1 295 TDAESKKKALREVGIEVV 312
                    334444455666788888 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.4e-05      0.16       5      91 ..      38     125 ..      34     162 .. 0.69
   2 ?   -0.2   0.0      0.18   6.3e+02       9      31 ..     290     312 ..     284     315 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.4e-05
                 S-EEEES-.SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT..-SEEEE-S-HHHHHHHHHHHTGGG--TT-EE CS
        IlvN   5 kkiaviGy.GsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkk..advvmiliPDelqkevyeeeiepnlkegkal 91 
                  k+   G+ G qG  +a+  ++ g +vv g + +++   +  +  f+  tv+ea+k+  a   +i iP  + ++ ++e+ie +l    ++
  CCD23797.1  38 TKVIFQGFtGKQGSFHAKISQEYGTNVVGGTNPKKAGQLHQGKPVFS--TVSEAIKEtgATASAIFIPPPFAAAAIKEAIEAELPLAVCI 125
                 5666667659*********************9999654444444444..56667665225566788999999999999999998766555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.18
                 EES-SHHHHHHHHHHHHTT--EE CS
        IlvN   9 viGyGsqGhaqalnlrdsgldvv 31 
                 v G G+ ++++ + lr+ g++vv
  CCD23797.1 290 VEGSGTDAESKKKALREVGIEVV 312
                 44899999999*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2422.86
//
Query:       CCD23798.1  [L=974]
Description: hypothetical protein NDAI_0C01370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-23   82.4   0.0    2.3e-17   62.7   0.0    3.6  2  Actin        Actin
    2.9e-11   43.2   1.2     0.0002   20.7   0.2    2.7  2  Actin_micro  Putative actin-like family
     0.0061   15.4   0.0       0.37    9.6   0.0    2.5  2  MreB_Mbl     MreB/Mbl protein
  ------ inclusion threshold ------
       0.86    9.9   7.6      0.039   14.2   1.2    2.1  2  LpqV         Putative lipoprotein LpqV
        3.7    5.5   8.4        2.6    6.0   4.2    2.2  2  FSA_C        Fragile site-associated protein C-terminus


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   6.3e-21   2.3e-17       2     340 ..     282     774 ..     281     783 .. 0.73
   2 !   13.2   0.0   7.2e-06     0.026     362     405 ..     925     969 ..     889     970 .. 0.80

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 6.3e-21
       Actin   2 devsavVlDnGssttraGyagedaPkavipslvgkprgrkvea...............................klyvgdealtkrpelevrspvedGv 69 
                 d+++++++ +Gs+++++G a +++P  ++p++v+ p+++ + +                               k                        
  CCD23798.1 282 DPTKTIIIHTGSHSLKIGKALDENP-IIVPNCVAIPKQEYEGMtrnintkdsiptppennifdsiaqsdefndlK------------------------ 355
                 7899********************9.689*****99999888844455555555555555554444444444440........................ PP

       Actin  70 vedwdaveelwehvlkeelkvdp............................................................................ 92 
                           +e+ +ke++k  +                                                                            
  CCD23798.1 356 --------LEIETNFKERMKYYKrriqpnsceqvksfnkiskpeilpisndpqriqwinestnkryygsnaerctdlhfktrkpfsnngsfniastdyi 446
                 ........3344444444444433444455555555555555555555566666777777777777777777777777777777777777777777777 PP

       Actin  93 .............................eehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgks.tglvvDsGasvtsvvpVld 161
                                              +eh+++l  p    ++  e  + +++ ++k++a+ + ++   + + +g s   +vv++Gas+t+v+ V +
  CCD23798.1 447 slqdllsdvtnliehsltsspfdlkpsqfKEHKVVLIIPDSFGKSHVELFITLLLTHLKFQAVAIIQESLATCYGAGNSvPTCVVNLGASQTTVACVDE 545
                 77777777777777777788888888999************************************************994589**************** PP

       Actin 162 GyvLkkairrsdlgGkaLteqlkellssknvevtp..rylikkkkvveaessae..keelekltesyktleeeevleeiKesvcevsedpeg....... 249
                 G vL++++++++ gG+++t+ ++  l ++++       ++i+  k +e+ +++    +++  + + ++ +++   +++i     +v +d+         
  CCD23798.1 546 GTVLENSMVSLNYGGNDITNIFATFLLQNDFPYHNwnLNSIEGWKLAEELKEKYitFQDMDVTVQLFNFIKRLPGMDTIEKYDFKVFDDVMLapltlff 644
                 **********************99888854433220023333333333222222335555555555666666666777766667776666657777887 PP

       Actin 250 .....deeksssspeksY...eLPDg.............................seiklgeeRfkvpEiLFdpsligsesaleee..kskllgiseli 309
                        +++++++++++    LPD+                             +e++l +   +vp +L ++++  +++++++   +   + i + i
  CCD23798.1 645 pkilkLMKEQQPQNRNKFlqsQLPDSrdiyttkindwrsitqeeclesklfsyidNELELLKRTLEVPILLENFQNNSPDNKNDKLnyTPLDVAIIQSI 743
                 7777633333456666676679******************************99999***********9996666555555533324466778888999 PP

       Actin 310 vaainacdvdlrpeLlanivvtGGnsllpgl 340
                 ++a  ++d+   +++++ni+v+GG s +p l
  CCD23798.1 744 MNASTNIDMSKMSSFYSNILVVGGGSKIPAL 774
                 999999999999**************99875 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 7.2e-06
       Actin 362 apee.erkysaWiGGSiLAslgtfqqlwvskqEYeEqGssvverk 405
                 ap + ++    W G+S+LA+l+  ++l ++ ++++ +Gs++ + k
  CCD23798.1 925 APRDiDPALILWKGASVLAQLKIIEELYMTNADWDVHGSRILQYK 969
                 34447899999*****************************98765 PP

>> Actin_micro  Putative actin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1     6e-08   0.00022      91     193 ..     449     553 ..     408     565 .. 0.80
   2 !   20.7   0.2   5.6e-08    0.0002     279     367 ..     883     972 ..     797     974 .] 0.69

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 6e-08
  Actin_micro  91 dklfkt.ikeivysLesevllkeelkpkdiFvslvfkdtlnrseilalvdlflnisgfkGilllPesLalclglg..iqsaiviseyekhttvslveD 185
                  ++l+   ++ i++sL s     +  + k++ v l+ +d + +s++  ++ l+l +++f+ + +  esLa c g g  +  ++v   +++ ttv  v+ 
   CCD23798.1 449 QDLLSDvTNLIEHSLTSSPFDLKPSQFKEHKVVLIIPDSFGKSHVELFITLLLTHLKFQAVAIIQESLATCYGAGnsVPTCVVNLGASQ-TTVACVDE 545
                  555554233456666665556666778999*****************************************998732556777666666.99999999 PP

  Actin_micro 186 yvlldsft 193
                   ++l+   
   CCD23798.1 546 GTVLENSM 553
                  88887655 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 5.6e-08
  Actin_micro 279 klsklerlkkinskvifidldnvtiselkeklafeta................nvvpeiieeakessilrgakvlkelevsKelWlTDkEWnsvrlRv 360
                  kl++ e   kin  +   +l++                                vvp   +     ++++ga vl++l ++ el++T  +W+  + R+
   CCD23798.1 883 KLKR-EMDDKINELLKE-KLEEY-------------LetvekaqngndhylpvSVVPAPRDIDPALILWKGASVLAQLKIIEELYMTNADWDVHGSRI 965
                  3333.333444444333.33332.............122233333333333434444222223334567***************************** PP

  Actin_micro 361 LKeKvLF 367
                  L  K +F
   CCD23798.1 966 LQYKSIF 972
                  **99888 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0001      0.37     117     187 ..     502     570 ..     456     630 .. 0.78
   2 ?    3.0   0.0     0.011        38     276     299 ..     761     784 ..     737     786 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0001
                 HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEEE..EES-SHHHHHHHHHHH CS
    MreB_Mbl 117 kkaGarevllieeplaAAiGaglpveepsgnmvvdiGggttevavislggivtsk..svrvaGdeldeaiiky 187
                 +++  + v +i+e+la   Gag  v     + vv++G+  t va +  g + + +  s+  +G+++ +   ++
  CCD23798.1 502 THLKFQAVAIIQESLATCYGAGNSVP----TCVVNLGASQTTVACVDEGTVLENSmvSLNYGGNDITNIFATF 570
                 5555688***************8885....689****************999866225677999988766555 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.011
                 -EEEESGGGGSBTHHHHHHHHHSS CS
    MreB_Mbl 276 givltGGgallkgldkllseetgl 299
                  i+++GGg+++  ld +l++++++
  CCD23798.1 761 NILVVGGGSKIPALDFILTDRINI 784
                 58999**************99986 PP

>> LpqV  Putative lipoprotein LpqV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.7         2   7.1e+03      14      48 ..     122     156 ..     110     159 .. 0.74
   2 ?   14.2   1.2   1.1e-05     0.039       7      81 ..     834     912 ..     812     918 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2
        LpqV  14 estaasaapgavevsPgGvttavdvpaesteeeYf 48 
                 +s a+++++++  + P+  t + +   +s ee Y 
  CCD23798.1 122 SSGANTPKASTPPLTPTPTTASTNKKLKSKEEAYK 156
                 33477788888888899889889999999998886 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.1e-05
        LpqV   7 ssttaaaest.....aasaapgavevsPgGvttavdvpaesteeeYfqaCraAkewmdeqggd.pksqiEpYLaslqssds 81 
                 +++t+++  t     a + +p+ +++s +   t++d  + +  +e  +a +  k+ md++ ++  k+++E YL+++ ++++
  CCD23798.1 834 NNNTTNS--TsnstpAITQVPSGTNISNNLNSTKIDNTPGAETNEVEEAVNKLKREMDDKINElLKEKLEEYLETVEKAQN 912
                 1111111..122335778899999**********************************998752799*********98876 PP

>> FSA_C  Fragile site-associated protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.027        98     525     587 ..     233     294 ..     201     311 .. 0.75
   2 ?    6.0   4.2   0.00074       2.6     565     610 ..     817     862 ..     784     890 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.027
       FSA_C 525 tdevlkekkaksstsltpklmsaakssleslqgsqdsiaiattasavelndatsstiasaata 587
                  d+++  +  ks  + +p++ s+a++  + ++   + i + +t++  +lnd t + i  +++ 
  CCD23798.1 233 DDQIFCLRDDKSLKNTSPNQTSTATPD-NIVESVATGINNKSTGDQLNLNDPTKTIIIHTGSH 294
                 45666666677777888***9999886.34446689999999*********999988766654 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.00074
       FSA_C 565 attasavelndatsstiasaatasslsstkstvtivvstndskdga 610
                  +ta+a++ ++++++t+   +t s+ +st++ +++   tn s++  
  CCD23798.1 817 ISTATAATTQTTATATTNNNTTNSTSNSTPAITQVPSGTNISNNLN 862
                 3466677777788888888888889999998888877777665432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1898  (0.105862); expected 358.6 (0.02)
Passed bias filter:                      695  (0.038764); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.96u 0.31s 00:00:01.27 Elapsed: 00:00:00.47
# Mc/sec: 6191.76
//
Query:       CCD23799.1  [L=767]
Description: hypothetical protein NDAI_0C01380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-28   99.3   2.5    1.5e-28   99.3   2.5    2.3  2  HSF_DNA-bind  HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> HSF_DNA-bind  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   2.5   8.3e-33   1.5e-28       1      96 []      80     205 ..      80     205 .. 0.94
   2 ?   -1.1   0.1      0.16   2.9e+03      68      85 ..     407     427 ..     343     460 .. 0.70

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 8.3e-33
                   HHHHHHHHHCT...TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSB..........................TT CS
  HSF_DNA-bind   1 FlkkLyklled...eelisWsedgksfvvkdkeefakevlpkyfkhsnfssFvrqLnlYgFrkvkrkee..........................kk 68 
                   F++kLy++led   e+li+Ws+dgksf+++++e+f+k  l +yfkh+n++sFvrqLn+YgF+kv+++++                          ++
    CCD23799.1  80 FIHKLYNILEDkdlEDLIWWSNDGKSFLIRPTERFSK-ALATYFKHTNITSFVRQLNIYGFHKVSNDHQyinnkteddtttnvtnhantdvnnniTD 175
                   9********99777888*******************9.6778*********************998888999999999****************988 PP

                   B--TTSEEEEE..SS--XXXXXXXXXXXXX CS
  HSF_DNA-bind  69 kkkskvweFsh..enFkrgkpelLkkikrk 96 
                   +++ k+weF+h  + F++g+ e+Lk ikr+
    CCD23799.1 176 NEQVKIWEFKHsaGIFRKGDVESLKLIKRR 205
                   99999******999**************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.16
                   TB--TTSE.EEEE..SS--XX CS
  HSF_DNA-bind  68 kkkkskvw.eFsh..enFkrg 85 
                   +++ +++w eF+    nFkr 
    CCD23799.1 407 DNEMKQQWdEFQSeiTNFKRS 427
                   333334444777756666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1695  (0.0945396); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 5130.37
//
Query:       CCD23800.1  [L=709]
Description: hypothetical protein NDAI_0C01390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-08   32.5   0.2    1.5e-07   31.1   0.2    1.8  1  UBA       UBA/TS-N domain
     0.0039   17.0   0.0      0.011   15.6   0.0    1.7  1  UBA_4     UBA-like domain


Domain annotation for each model (and alignments):
>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.2   1.7e-11   1.5e-07       2      37 .]       3      38 ..       2      38 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.7e-11
                CHHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA  2 deeaiqrLveMGFdreevveALratgnNeErAveyL 37
                 +++++ L+eMG +re +v AL ++++N+E+Av ++
  CCD23800.1  3 SNDSVSSLMEMGIPREVAVNALIRANGNLEAAVAFI 38
                6899*****************************886 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-06     0.011      12      39 ..      14      41 ..       6      44 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-06
       UBA_4 12 GadeekArqlLeannWdLerAislyFds 39
                G+ +e+A+  L ++n++Le+A++  F +
  CCD23800.1 14 GIPREVAVNALIRANGNLEAAVAFIFSN 41
                7899********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4919.51
//
Query:       CCD23801.1  [L=705]
Description: hypothetical protein NDAI_0C01400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-11   44.2   0.5    2.9e-11   44.2   0.5    2.7  3  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2     0.068   1.2e+03     138     181 ..     205     250 ..     138     281 .. 0.55
   2 ?   -1.9   0.1      0.22     4e+03       7      47 ..     253     308 ..     251     348 .. 0.62
   3 !   44.2   0.5   1.6e-15   2.9e-11       1     203 [.     400     637 ..     400     638 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.068
                  HHSCHHHHCC...HHHHHH.HHHHTTCSEEEEEESSESS..CSSSCSCCH CS
  Metallophos 138 nleleapepg...dewlkd.lekrekadwvivlgHsply..rgsgylfgd 181
                  + +  + +p     + ++d ++ ++  d  ++++H+ +   +     +++
   CCD23801.1 205 SEIAMSRDPTiipMQVIRDvNKLFKSSDSSMFHTHVFHQsgD----EHDP 250
                  222222222234477888888888888999999977766331....2222 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.22
                  ESBTB...............TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS CS
  Metallophos   7 gDlHl...............algggqlddllkllddllreekpdlvllaGDlvdrg 47 
                  +D H                  g+  l++++ +l  + ++++ dl l+  D+ +rg
   CCD23801.1 253 SDNHAhnknkdidvhddnshMNGYQFLQQIWSWLLAISDSHDDDLSLMGEDWKYRG 308
                  55555555555555556444444455555555555556667777777666666666 PP

  == domain 3  score: 44.2 bits;  conditional E-value: 1.6e-15
                  EEEEEEESBTB......TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS...HHHHHHHHHHHHHHHHTSEEEEEC-TTS...........CHH CS
  Metallophos   1 lrilvigDlHl......algggqlddllkllddllreekpdlvllaGDlvdrg...dlekellellaalvkypipvylllGNHe...........gfe 78 
                  ++il+++DlH+       +    +++ + + + +lre  p+l++++GD+ d++   d+++++++l+++++++ ip+ ++lG  +           +  
   CCD23801.1 400 FKILQVSDLHYkcsdesISNLKEFQTNNFIKKVILRE-FPNLIVITGDILDGTncvDYQTCIMKLVQPFINFEIPYLIMLGTSDysryasresilQ-- 494
                  79*********77766533333333333333445666.9*************99******************************433333333330.. PP

                  HHHHHHHHHHHHHHHHHEHHHCEEETSEEEEEETTE.EEEEEEESE.....CEEE.THHHHHHHHHHHSCHHHHCCHHHHHHHHHHTTCSEEEEEESS CS
  Metallophos  79 eellnkygylgifsepwrsdaevfnnlplaslgsgs.lkvlllhGg.....spel.lvsldklgslnleleapepgdewlkdlekrekadwvivlgHs 169
                              f ++  ++ +    l  ++  ++  + ++  +++     +p++ ++ +d+ + ++  +             ++++ ++w++ l+ +
   CCD23801.1 495 ------------FIRTLPYCIN---KLSQNVNDTNVmIPIYNKYNDddkvnDPYImIYGVDSFNPIDNTK------------MKNEGSVKWDYGLAFR 565
                  ............3444444421...122222111212233333333222233333222222222222221............2234555666666666 PP

                  ESS......................................CSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 170 ply......................................rgsgylfgdealedllkkygvdlvisGHtHv 203
                   l+                                       g g + g + l d+l   +v++  +GH+H 
   CCD23801.1 566 SLPipeyrpegmfpivgqynekssltfeefannddsvdaddGGDGRWIGANKLQDFLISENVQVLSCGHEHS 637
                  66666777777777777777777888888888888999999999***************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4951.60
//
Query:       CCD23802.1  [L=369]
Description: hypothetical protein NDAI_0C01410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     9e-106  353.9   0.0   1.1e-105  353.7   0.0    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.7   0.0    6e-110  1.1e-105       1     348 []      38     365 ..      38     365 .. 0.95

  Alignments for each domain:
  == domain 1  score: 353.7 bits;  conditional E-value: 6e-110
                 EEEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CSSSSSSHHHHHHHHHHHTTEEEEEE CS
      Iso_dh   1 kiallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpkekevrpengLlaLrkeldlfanlr 99 
                 +++++egdgiGpe++++++++++aak   +  +++e +dv+  +i+   +++pe ++++i+++ v+l+g++ tp +k++r+ n  l+Lrk+++lfan+r
  CCD23802.1  38 TVSFIEGDGIGPEISQSVKQIFDAAK--VP--IDWEPCDVSPLFING-LTTIPEPAVQSINKNLVALKGPLATPIGKGHRSLN--LTLRKTFGLFANVR 129
                 589*********************99..55..9************99.899********************************..88************ PP

                 EEE-BCCTTCCSSBTHHHHCT-EEEEEEE-SSCGGCSSEEEEETTG.GGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTTHHHH.HHH CS
      Iso_dh 100 pvkvfeklkvksplkrevveevdlvivReltggiYfgeekekkgsifteevavdtklyseeeieriaraafelAlkrgkkkvtlvdKanvlksse.lwr 197
                 p+k++  ++ k+++      +vdlvi+Re+t+g Y+g+e++ +       v++++kl++++++er++r+a e+A++ g+ +v++v+K+++ + ++ l+ 
  CCD23802.1 130 PAKSI--EGFKTIYD-----NVDLVIIRENTEGEYSGIEHVVTPG-----VVQSIKLITRDASERVIRYAYEYARAIGRPRVIVVHKSTIQRLADgLFV 216
                 *****..67777777.....5***********************7.....8********************************************7777 PP

                 HHHHHHHCCTTTTSEEEEEEHHHHHHHHHHSGGGGS..EEEE-HHHHHHHHHHHHHH.TTSGCC-EEEEEETSS-EEEEESS---CCCTTSS-S-THHH CS
      Iso_dh 198 kiveevaeeeypdielehqlvDsaamqlvkspkqfd..VivtkNlfGDilSDeaaal.vGslGllpSaslgekkvaifEavHGsapdiagkdkaNpiav 293
                 ++++e+ + eypdi+le++l+D++++++v +p+ ++  V v++Nl+GDilSD+++ l  GslGl+pSa++g ++v ifEavHGsapdiag++kaNp+a 
  CCD23802.1 217 DVAKELSQ-EYPDIQLETELIDNTVLNVVSNPSSYSnaVSVCPNLYGDILSDLNSGLsAGSLGLTPSANIG-HEVSIFEAVHGSAPDIAGQNKANPTAL 313
                 77777777.***********************999889*****************983589**********.79************************* PP

                 HHHHHHHHHHTTT-HHHHHHHHHHHHHHHHH..TSCCHHHCTTSTCCCHHHHHHHHH CS
      Iso_dh 294 ilSaalmLryslgleeaAdkiekAvekvlea..givTkDlageaakevstsefgdav 348
                 +lS ++mL++ +gl+++AdkiekAv +++++  + +T+Dlag+a    +ts+f+dav
  CCD23802.1 314 LLSSVMMLNH-MGLNNHADKIEKAVLSTIASgpEGRTGDLAGKA----TTSSFTDAV 365
                 **********.********************88889********....9*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2646.52
//
Query:       CCD23803.1  [L=614]
Description: hypothetical protein NDAI_0C01420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-34  118.1   0.4    8.3e-34  116.6   0.4    1.8  1  RhoGAP    RhoGAP domain


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6   0.4   4.6e-38   8.3e-34       1     149 [.      94     290 ..      94     293 .. 0.89

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 4.6e-38
                 BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCT....TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHH.HHTS........ CS
      RhoGAP   1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavds....dleeedvhavaslLKrfLrelpepLltkelyeelie.aaks........ 86 
                 Pi+v+kc ++++ +gl+t gi+R+ g+++rv+el++ f   ++       +++ +++h+va+lLKr+L++l epL++ +lye + e + ++        
  CCD23803.1  94 PIVVAKCGSYLKTNGLKTSGIFRIGGNNKRVRELQNIFCDPSQDFGlkfdEWDHYSIHDVATLLKRYLNNLDEPLISLNLYEGFREpL-RKrqdiidyl 191
                 9***********************************99776665448999***********************************844.4435666665 PP

                 ...SSHHHH.....................................HHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT CS
      RhoGAP  87 ...edeeer.....................................lealkellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlr 145
                    e                                          + ++++l+ kLP+e  ++  yLl++L+ + ++s++n MtaknL+ +f+P++l+
  CCD23803.1 192 nakE----TekqdieeqiptddnieeeeqfemtrykkklardireaIAEYEDLFTKLPNERKQLTIYLLDLLNLFVRQSDVNLMTAKNLSAIFQPSILS 286
                 5431....145677888999999999999********************************************************************** PP

                 -TSS CS
      RhoGAP 146 pkse 149
                 ++++
  CCD23803.1 287 HPNH 290
                 9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1195  (0.0666518); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4505.84
//
Query:       CCD23804.1  [L=539]
Description: hypothetical protein NDAI_0C01430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-68  229.6   0.3    2.9e-68  229.2   0.3    1.1  1  GTP_EFTU  Elongation factor Tu GTP binding domain
    2.3e-19   69.2   0.0    7.6e-19   67.5   0.0    1.8  1  EFG_C     Elongation factor G C-terminus
      7e-05   22.9   0.1    0.00014   21.9   0.1    1.5  1  MMR_HSR1  50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.2   0.3   4.9e-72   2.9e-68       2     193 ..      18     343 ..      17     344 .. 0.89

  Alignments for each domain:
  == domain 1  score: 229.2 bits;  conditional E-value: 4.9e-72
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE..............TTCSSEEEEEEEESSSGGGHHH CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle..............ketkkylinliDtPGHvdFske 86 
                 ++rn+++i+hvDhGK+TLtd+L++k+g+is   +ka+e+r++Dt+k+E+ergiTiks+aisl+              +e++++linliD+PGHvdFs+e
  CCD23804.1  18 NVRNMSVIAHVDHGKSTLTDSLVQKAGIISA--AKAGEARFMDTRKDEQERGITIKSTAISLYsempeedvkdinqkTEGNSFLINLIDSPGHVDFSSE 114
                 79*****************************..778889***********************************9855********************* PP

                 HHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH...............HHHHHHHHHTTTTTEEE CS
    GTP_EFTU  87 virglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk...............eeklekygekgekevpv 170
                 v+++lrv+Dga++vvd veGv++qte+vlr+al e+++++v+iNK+Dr+  el+ ++e+++q++sr+                +++++y+ kg    +v
  CCD23804.1 115 VTAALRVTDGALVVVDTVEGVCVQTETVLRQALGERIKPVVCINKVDRALLELQVSKEDLYQSFSRTvesvnviistyadevLGDVQVYPSKG----TV 209
                 ****************************************************************99988888888888877777777777776....5* PP

                 EEEBTTTTBTHH....................................................................................... CS
    GTP_EFTU 171 vfgSalkgegvk....................................................................................... 182
                 +fgS+l+g++++                                                                                       
  CCD23804.1 210 AFGSGLHGWAFTirqfaaryakkfgvdkvkmmerlwgdsyfnpktkkwtnkdtdadgkplerafnivvldpifrifaavmnfkkdeipvllekleinlk 308
                 *********999888888888888888998888999998999999999999999999888888888888888888888888888888888888888888 PP

                 ........................HHHHHHHHHSH CS
    GTP_EFTU 183 ........................tllealvellp 193
                                         +l+e++v +lp
  CCD23804.1 309 gdekdlegkallktvmkkflpaadALMEMIVMNLP 343
                 88888888877777777777777777777777766 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   0.0   1.3e-22   7.6e-19       8      86 ..     427     506 ..     425     508 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 1.3e-22
                 EEEEEEECCCCCCHHHHHHHCT-EEEEEEEE..TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHH CS
       EFG_C   8 kveievpeeyvgkvisdlssrrGeiedmeqd.asgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdkl 86 
                  vei++pe+ vg ++s l+++rG++++ eq+ ++  ++++a +P++e++gf  eLr++T G++  +m f++++ + +d+l
  CCD23804.1 427 LVEIQCPEQAVGGIYSVLNKKRGQVISEEQRpGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWATLGSDPL 506
                 59*****************************99****************************************9998876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   2.3e-08   0.00014       7     114 .]      27     159 ..      21     159 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.3e-08
                 STTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEE..................................EEEEECGGCSSHHHHHHHHHHHH CS
    MMR_HSR1   7 rpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgke..................................ielvDtpGliegaseekglgkaf 70 
                 +   GKStL  +l+++   i ++k+g  r + +++ +    e                                  i+l+D pG ++       ++ ++
  CCD23804.1  27 HVDHGKSTLTDSLVQKaGIISAAKAGEARFMDTRKDEQ---ErgitikstaislysempeedvkdinqktegnsflINLIDSPGHVD-------FSSEV 115
                 5678***********94456688889999998886541...12445666777888888888899999999999999********665.......66666 PP

                 HHHHC.TSEEEEEEETTTTCSHHHHHH.HHHHHHHTTSEEEEEEES CS
    MMR_HSR1  71 lalee.adlillvvdaseeklkpldee.leelleeakkplilvlnk 114
                  a  + +d +l+vvd   e++  + e+ l + l  ++++ ++++nk
  CCD23804.1 116 TAALRvTDGALVVVDTV-EGVCVQTETvLRQALG-ERIKPVVCINK 159
                 6666647********77.4343333330344443.33444666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4344.66
//
Query:       CCD23805.1  [L=539]
Description: hypothetical protein NDAI_0C01440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-09   36.0   0.4    1.1e-08   35.0   0.4    1.5  1  PX        PX domain
    1.1e-07   31.6   4.1    2.2e-07   30.7   4.1    1.4  1  Vps5      Vps5 C terminal like
  ------ inclusion threshold ------
       0.69   10.4   7.1       0.19   12.1   3.2    2.1  2  RXLR      RXLR phytopathogen effector protein, Avirulence act


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.4   1.9e-12   1.1e-08       5     112 ..      94     207 ..      91     208 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.0 bits;  conditional E-value: 1.9e-12
                 EEEEEEEEEE....TTSSEEEEEEEEEETTS....SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHH CS
          PX   5 qvsvlerets....gskkhsyylyevelktg....akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrll 95 
                 +++vl++e++     +k++ ++++ ++++       +++++k+ Y++F eL ++L    p++ iP+lP + + +    +++e   +  k ++++++r+ 
  CCD23805.1  94 IIKVLNVERKgalmEKKENPIIIFDITTNVPtfrkTSYKNIKKTYQEFTELFKYLNGSLPECFIPSLPLSYTNYG--IQNKEDQVQLLKCFQNWFNRIT 190
                 577888888888888888999999999998899999***********************************9988..9********************* PP

                 TSCHHHHSHHHHHHHHS CS
          PX  96 nhpelrnsevlteFLev 112
                  +p+  +++++  F+e 
  CCD23805.1 191 MDPFVLRNNEFAFFIEC 207
                 **************986 PP

>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   4.1   3.6e-11   2.2e-07      48     196 ..     266     413 ..     257     442 .. 0.91

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 3.6e-11
        Vps5  48 ellvsqrkelasataelakslesLaslelskslsralsqlaeveerikellerqaeqdvltLgetideylrligsvksvfeqRvklwqkwqsaeqelsk 146
                    ++ rk +++  + +++   +L++l+ s++ s++++++  + + i ++ +  a  d+ tL   ++  +r    vk+ +++R  + +++ +a+q+ + 
  CCD23805.1 266 LKCSKLRKLMVQEENAVGQGFVKLGDLNTSRG-SKLYKRFGKILNAIGDVDSIIATMDMGTLYDGLSWIVRDSYVVKETLTDRHLVMRELSQAQQNSKV 363
                 5567889999*****************99876.9***************************************************************** PP

        Vps5 147 kkeqleKlekaaksqqdklqqlkkeveelerkvqeaekeFeeisetikkE 196
                 k+eq+ +l+ +  s++ k++ +  ++++++r  qe++ + ++i++++  E
  CCD23805.1 364 KQEQARRLRSKRDSNPLKVDDALRSLKQATRTEQELTLKLQKITANMLIE 413
                 ********************************************998544 PP

>> RXLR  RXLR phytopathogen effector protein, Avirulence activity
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.93   5.6e+03     124     139 ..     128     143 ..     122     145 .. 0.78
   2 ?   12.1   3.2   3.2e-05      0.19      19     104 ..     336     423 ..     330     430 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.93
        RXLR 124 kekYktlakqYaaylk 139
                 k+ Yk++ k Y+ +++
  CCD23805.1 128 KTSYKNIKKTYQEFTE 143
                 4678888888888875 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.2e-05
        RXLR  19 gsasaastkkdqktvavvskssgeaesrdaadkRfLRshkae...eddeeseeraagknlldvfvekklkkmlanekyakklFreWkan 104
                 +s ++++t +d+  v+   +++++  + +++++R LRs+++    + d+    +++ ++  + + + kl+k+ an    +k + eW+++
  CCD23805.1 336 DSYVVKETLTDRHLVMRELSQAQQNSKVKQEQARRLRSKRDSnplKVDDALRSLKQATRTEQ-ELTLKLQKITANMLIEQKEWLEWYES 423
                 5566666666666666666666889999*********9884457777777777777666666.9999********99999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1604  (0.089464); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 3645.52
//
Query:       CCD23806.1  [L=227]
Description: hypothetical protein NDAI_0C01450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-17   64.0   0.6    3.9e-16   59.6   0.1    2.5  2  HAD_2            Haloacid dehalogenase-like hydrolase
    4.4e-14   53.3   0.0    3.9e-10   40.4   0.0    2.2  2  Hydrolase        haloacid dehalogenase-like hydrolase
    2.3e-08   33.9   0.0    4.3e-08   33.1   0.0    1.4  1  Hydrolase_like   HAD-hyrolase-like
    0.00053   19.8   1.0       0.24   11.1   0.1    3.1  3  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.016   14.8   0.0       0.45   10.1   0.0    2.2  2  PGP_phosphatase  Mitochondrial PGP phosphatase
       0.18   12.2   0.0       0.44   10.9   0.0    1.7  1  HAD              haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.1   1.3e-19   3.9e-16       3     176 ..      20     180 ..      18     182 .. 0.76
   2 ?   -1.3   0.0      0.69   2.1e+03      75      95 ..     199     219 ..     189     223 .. 0.73

  Alignments for each domain:
  == domain 1  score: 59.6 bits;  conditional E-value: 1.3e-19
       HAD_2   3 FDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee..kieellrkyneekkkkevkpydgvkelLeeLkeagyklg 99 
                 FD+DgT+   ++ ++ a+++++   gl++ s + l  + +l++            e      +  +++++e+  + e+ p +g+ elLe L+ ++++  
  CCD23806.1  20 FDMDGTMCIPQPWMFPAMRSAV---GLNDKSIDILTYIDELPT------------EAArtEANLRIEEVEEKAMR-EMLPQPGLVELLEFLTVNNISKN 102
                 5666666655555555555555...332223222222222333............11122445566788888888.99********************* PP

       HAD_2 100 ivTsksreaveekleqlgiesy..FdvivtsedvekkKPdpeviekaleklklkkeeviyvGDsptDieaakkagikvi 176
                 i T +  + v+  l+++  ++y  F++i+t  d+   KP+p++++ + +kl+++++e++++GDs+ D+++++ ag+ ++
  CCD23806.1 103 ICTRNVIKPVDYLLTRFIPKDYskFEHIITR-DFRPTKPNPDPLLHIAKKLNIESNEMMMIGDSFDDMKSGRSAGCVTV 180
                 *****************99977669999986.578889*************************************9876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.69
       HAD_2  75 kkevkpydgvkelLeeLkeag 95 
                 ++ v+ +++v++++e+L+ ++
  CCD23806.1 199 DTAVNSLSDVIKIVETLNGHQ 219
                 467889999999999996555 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00013      0.38       1      18 [.      15      32 ..      15      50 .. 0.79
   2 !   40.4   0.0   1.3e-13   3.9e-10      94     210 .]      59     176 ..      37     176 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00013
                SSEEEEESBTTTBCHHHH CS
                xxxxxxxxxxxxxxxxxx RF
   Hydrolase  1 iktvvfDkdGTLttgeps 18
                ik+vvfD+dGT +  +p 
  CCD23806.1 15 IKAVVFDMDGTMCIPQPW 32
                89*********9977655 PP

  == domain 2  score: 40.4 bits;  conditional E-value: 1.3e-13
                 HHHCHHHHHHTTHHHHHHHHH.HTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT...GGGESEEEEHHCESSTTTSHHHHHHHHHHHTS CS
                 xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  94 qsqgrtvallqaralavftia.dplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG...ddyfdaviasdietvakpspegkvaaireLqg 188
                  +++rt+a l  r+ +v + a  +  + p+++e+++ L  ++i   ++t +  ++++ ++ ++      +f+++i++d     kp+p+ +++++++L++
  CCD23806.1  59 TEAARTEANL--RIEEVEEKAmREMLPQPGLVELLEFLTVNNISKNICTRNVIKPVDYLLTRFIpkdYSKFEHIITRDFRP-TKPNPDPLLHIAKKLNI 154
                 5677888888..7777777776677899*****************************999995555555556666666665.***************** PP

                 TGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 189 kpeevamVGDgvnDaaalaaAg 210
                 + +e++m+GD++ D++ ++ Ag
  CCD23806.1 155 ESNEMMMIGDSFDDMKSGRSAG 176
                 *******************998 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   1.4e-11   4.3e-08       4      59 ..     139     193 ..     137     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.4e-11
                     TTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHH CS
  Hydrolase_like   4 KPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedle 59 
                     KP+p  +  ++++l+++++e++miGD+  +D+++++ aG+ +vL +  v+++   e
      CCD23806.1 139 KPNPDPLLHIAKKLNIESNEMMMIGDS-FDDMKSGRSAGCVTVLLKNHVNGNVLTE 193
                     9**************************.*****************99887765544 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.065   1.9e+02       1      10 [.      18      27 ..      18      38 .. 0.90
   2 !   11.1   0.1     8e-05      0.24     192     216 ..     145     169 ..     143     170 .. 0.92
   3 ?    4.0   0.1     0.011        34      61     102 ..     186     226 ..     174     227 .] 0.90

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.065
                 EEEEIIIIIS CS
  Hydrolase_3  1 ialDlDGTLl 10
                 +++D+DGT++
   CCD23806.1 18 VVFDMDGTMC 27
                 69******85 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8e-05
                  HHHHHHHCT--GGGEEEEESSGGGH CS
  Hydrolase_3 192 lkklakelnisleeviafGDgeNDi 216
                  l ++ak+lni+++e++ +GD+  D+
   CCD23806.1 145 LLHIAKKLNIESNEMMMIGDSFDDM 169
                  5799*****************9997 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.011
                  GGGTEEECTTTEEEEE--B-HHHHHHHHHHHHHTTCEEEEEE CS
  Hydrolase_3  61 lNGaliddekgkilykstiskedvkeiikllkennveillyt 102
                  +NG +   e++k++++   s +dv +i+++l+ ++ ei+ y+
   CCD23806.1 186 VNGNVL-TEHDKLVDTAVNSLSDVIKIVETLNGHQTEIHSYQ 226
                  7*****.9***************************9998775 PP

>> PGP_phosphatase  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00015      0.45      36      57 ..      10      31 ..       3      40 .. 0.82
   2 ?    2.3   0.0     0.037   1.1e+02     135     167 ..     155     186 ..     143     187 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
  PGP_phosphatase 36 kkektikavvlDKDnclaapke 57
                      +++ ikavv+D D +++ p+ 
       CCD23806.1 10 MNNRVIKAVVFDMDGTMCIPQP 31
                     56788**************985 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.037
  PGP_phosphatase 135 eadeiavvgDRllTdvllanmmGslgvwlrdgv 167
                      e++e++++gD  + d+  ++  G ++v+l++ v
       CCD23806.1 155 ESNEMMMIGD-SFDDMKSGRSAGCVTVLLKNHV 186
                      6899******.589*************999876 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00015      0.44       1     184 [.      18     169 ..      18     173 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
         HAD   1 alfDfDgTL.ldgdslelllrfllrrgaprlwralrek..lllalfrellrldraglaelleallagls.eelaaelerfvaevirpklldpgalella 95 
                 ++fD+DgT  +++     +++  +r+     +  l+ k    l +++el +          +++ a l+ ee+++ + r +       l +pg++ell+
  CCD23806.1  18 VVFDMDGTMcIPQ----PWMFPAMRS-----AVGLNDKsiDILTYIDELPTE--------AARTEANLRiEEVEEKAMREM-------LPQPGLVELLE 92 
                 79*******9999....777755555.....334444411444444555555........455555555577777777777.......67799999999 PP

         HAD  96 ahraaGdrvvvvSgg....lrplvepll.aelg.adevlatelevddrltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDl 184
                     +++   +++ +     ++l+ ++  + +  +++++        ++      ++++ + +             + +i+  e++ +GDs  D+
  CCD23806.1  93 FLTVNNISKNICTRNvikpVDYLLTRFIpKDYSkFEHIITR------DFRPTKPNPDPLLHIAK------------KLNIESNEMMMIGDSFDDM 169
                 888************87777777777777788889999888......44444114444444422............2334445577777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1700.94
//
Query:       CCD23807.1  [L=111]
Description: hypothetical protein NDAI_0C01460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-23   83.5  11.5    1.4e-23   83.3  11.5    1.1  1  Ribosomal_60s  60s Acidic ribosomal protein
  ------ inclusion threshold ------
       0.18   12.1   0.0       0.26   11.7   0.0    1.2  1  EF-hand_14     EF-hand domain


Domain annotation for each model (and alignments):
>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3  11.5   1.6e-27   1.4e-23       1      88 []      17     110 ..      17     110 .. 0.78

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 1.6e-27
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS--STTT CS
  Ribosomal_60s   1 eptaenikkvlkaagveveaarvkllvkalegk.dieellangaakla......aaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedddmGfgLF 88 
                    +p+a++ik+v++++gve+e++r++ l+++legk +++e++a+g++k+a      aa++ + aaaaa+a+ +aa+e+k+ee  +Ee+dddmGfgLF
     CCD23807.1  17 SPSAADIKQVIESVGVEAEDSRINELLTSLEGKgSLDEIIAEGSKKFAsvpaggAAVGGSSAAAAAGASGEAAAEEKEEEA-KEESDDDMGFGLF 110
                    59*****************************9999****************996333333333334444444444444444.47*********** PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.9e-05      0.26      18      50 ..      19      51 ..       7      65 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.9e-05
  EF-hand_14 18 svakllkaLaetGirkdDpRLkellkklkkvek 50
                s a++ ++++++G++ +D R++ell+ l+    
  CCD23807.1 19 SAADIKQVIESVGVEAEDSRINELLTSLEGKGS 51
                6788999*******************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 863.09
//
Query:       CCD23808.1  [L=322]
Description: hypothetical protein NDAI_0C01470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-60  198.9   0.4    7.2e-20   70.7   0.0    3.1  3  Mito_carr  Mitochondrial carrier protein
     0.0042   17.4   0.0      0.057   13.8   0.0    2.5  1  Tim17      Tim17/Tim22/Tim23/Pmp24 family


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   4.7e-23   4.2e-19       4      93 ..      47     133 ..      45     136 .. 0.93
   2 !   70.7   0.0   8.1e-24   7.2e-20       4      94 ..     141     234 ..     139     237 .. 0.88
   3 !   56.7   0.0   1.9e-19   1.7e-15       4      92 ..     241     321 ..     238     322 .] 0.94

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 4.7e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHH.HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGl.rglyrGllpnllrvapasalkfvlyetlkrll 93 
                 s+++++++G++aga+++l+ +P+d++K+rlqtq++         +++++k +yk+eG+ +g+++G+   l++ a ++a+ f++y+++  +l
  CCD23808.1  47 SAIRDIVTGSIAGAIGKLIEYPFDTIKVRLQTQESYMFPD----TWSCIKYTYKNEGIlHGFFQGIESPLIGAALENAILFLSYNQCASFL 133
                 57899****************************9987653....9************9889*************************99887 PP

  == domain 2  score: 70.7 bits;  conditional E-value: 8.1e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...CCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqt...qkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 s++  l+++ +ag++a++v tP++++K++lq+   q + s ++++++i+ ++k+i+ke G++gl++G + +++r ++ s+++f++ye +kr l 
  CCD23808.1 141 SFVVILISATFAGSCASFVLTPIELIKCKLQIsnlQMDLSDEERHTSIIPTIKHIVKERGILGLWQGQSSTFIRESIGSMIWFATYELMKRSLR 234
                 577789**************************554444455555555*******************************************9886 PP

  == domain 3  score: 56.7 bits;  conditional E-value: 1.9e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrl 92 
                  +++ l++G++ag++    ++P d+vK  +qt+ ++ k+        ++++i+   G++g+yrGl+++l+r +p++a+ f++ye+l +l
  CCD23808.1 241 DTWELLISGAIAGLAFNGTVFPADTVKSIMQTEHTNLKE--------TVQNILDRYGVAGFYRGLGITLIRAIPSNAAIFFTYEKLTKL 321
                 57899******************************9665........789***********************************9887 PP

>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.3e-06     0.057      58      96 ..     221     259 ..      43     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 6.3e-06
       Tim17  58 vvgglysgiecaleklRgkediwnsvaAGaltGallrag 96 
                 ++ + y +++  l+  ++ +d w+ +++Ga++G ++++ 
  CCD23808.1 221 IWFATYELMKRSLRMEKDSNDTWELLISGAIAGLAFNGT 259
                 4566677777777777799*****************754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2573.87
//
Query:       CCD23809.1  [L=343]
Description: hypothetical protein NDAI_0C01480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-63  213.1   0.0    5.3e-63  212.9   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
     0.0096   15.5   0.0      0.035   13.7   0.0    1.8  2  CNPase        2',3'-cyclic nucleotide 3'-phosphodiesterase (C


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.9   0.0   5.9e-67   5.3e-63       1     292 [.      18     334 ..      18     336 .. 0.91

  Alignments for each domain:
  == domain 1  score: 212.9 bits;  conditional E-value: 5.9e-67
                   .EEEE-SSS-ST.....TS-H.HHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE...................--S CS
  Aldo_ket_red   1 elglGtwqlgsk....eeisk.eealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv...................dlr 73 
                   ++ +G +++gsk    ++i++ e+ + +l++++++G ++fDtA+vY +g se+++Ge+lkk++ +re+v+i tK+                   +  
    CCD23809.1  18 PILIGCMSYGSKkwadWVIEDkEKIFSILKHCYDNGLRTFDTADVYSNGLSERIIGEFLKKYNIRRETVVILTKIfypvdetldlhhgnstnerNAL 114
                   6889*******99988777551556788*****************************************************************9999 PP

                   SSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BT CS
  Aldo_ket_red  74 daeiksglskeniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynl 166
                   d  ++ gls+++i++ +++s++rLgt y+D+l++Hr d+++p  ee+++al++++ eG++r+iG S+  +    ++    +k +  k+v++q  ynl
    CCD23809.1 115 DLVNQNGLSRKHIITGVKNSVERLGT-YIDVLQIHRLDHDTP-KEEIMRALNDVIVEGSVRYIGASSMWATEFAELqftaEKNGWFKFVSSQSYYNL 209
                   9999*********************6.***************.***********************88877777778999***************** PP

                   T-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------...TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEE CS
  Aldo_ket_red 167 lreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd...ertsknldaaeelselakehgvslaqlalryalsqpavgiv 260
                   l++++e++l+++ckk+gv+li++sp ++G lt+  ++++  +   +++ + r    +  + + + ++++++la+++++s+a l++++ l   ++  +
    CCD23809.1 210 LNREDERELIPFCKKHGVGLIPWSPNARGVLTRPLEQQTTRKL--TDPTFIRMgldKLSEDQKEIVRRVEHLAAKKNISMAMLSIAWTL--HKGANP 302
                   ********************************87665555432..23333333565888889999************************..99**** PP

                   EE--SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 261 ipgasnieqlednldalelklseeevaeldel 292
                   i+g  +ie++++ ++a +++l+e+++++l+e 
    CCD23809.1 303 IVGLNSIERVDEAIKAIDVELTEDDIKYLEET 334
                   *****************************986 PP

>> CNPase  2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.11     1e+03     165     195 ..       3      32 ..       1      55 [. 0.74
   2 !   13.7   0.0     4e-06     0.035     141     200 ..     123     187 ..      97     207 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.11
                 HHHHHHTT-S-EEEEEETTEEEEE-STT-EE CS
      CNPase 165 ilklekgGskgeeveelelGkllylGeGrWl 195
                 ++k+ + G+ g ++  +  G + ++G+ +W 
  CCD23809.1   3 LVKQVRLGQSGLKISPILIGCM-SYGSKKWA 32 
                 7899999999999999999976.67888885 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4e-06
                 SSSEEE----TT--HHHHHHHHHHHHHHHHTT-S-EEEEEET....TEEEEE-ST.T-EEEEEEE CS
      CNPase 141 srahvtlGcaedveavqtGldlleilklekgGskgeeveele....lGkllylGe.GrWllslrk 200
                 sr h+  G  + ve + t +d+l+i +l+++  k e +  l+     G++ y+G   +W  ++++
  CCD23809.1 123 SRKHIITGVKNSVERLGTYIDVLQIHRLDHDTPKEEIMRALNdvivEGSVRYIGAsSMWATEFAE 187
                 9*********************************9988765422227999999962467766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2854.10
//
Query:       CCD23810.1  [L=948]
Description: hypothetical protein NDAI_0C01490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-27   94.3   0.7    1.2e-26   92.9   0.7    1.8  1  SPA       Stabilization of polarity axis
    2.3e-26   92.9   2.0    2.3e-26   92.8   0.1    2.1  2  Afi1      Docking domain of Afi1 for Arf3 in vesicle traffick


Domain annotation for each model (and alignments):
>> SPA  Stabilization of polarity axis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.7   1.4e-30   1.2e-26       4     111 ..     346     467 ..     343     470 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 1.4e-30
         SPA   4 llkllekftpeiill.inalltskriivlstkasadevsefvLalsnlisp.agdvlrgfknns...fPyvdlseldalekvpg.........yIvGvt 88 
                 +l++l++f+p++++l + + ++ ++++v st+++++++s+f++alsnl+s  +g++ ++f n+    fPy+d+s +dal+k+ +         +IvG+ 
  CCD23810.1 346 VLNFLNQFIPFLQKLdFSKGIKPWKLLVTSTNETKSTLSDFIIALSNLVSCfTGKQNNYFMNKHiliFPYMDISIIDALRKFLEptsefhdsfTIVGTG 444
                 799***********************************************988888889988889********************************** PP

         SPA  89 NPiFeeqeqlWDvlydldsgsvk 111
                 NPiF+ q+++WD++yd+ds+ ++
  CCD23810.1 445 NPIFQFQTDIWDYYYDMDSEILY 467
                 *******************8776 PP

>> Afi1  Docking domain of Afi1 for Arf3 in vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.1   2.6e-30   2.3e-26       1     133 []      35     187 ..      35     187 .. 0.88
   2 ?   -3.8   0.2       1.8   1.6e+04      52      62 ..     508     518 ..     469     542 .. 0.54

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 2.6e-30
        Afi1   1 yilvAeFdidkGpvikhqYPkaipg.....................detlseLAelmlPdqvhkrkq..DitvFfLykdtsteeeeleeeekknklekr 76 
                 +il+A Fd++ Gp ik qYPk+ipg                     de l +LA+lmlP++v+k+++  D+tvF+Ly+++ t++++l++ ++k+ ++ +
  CCD23810.1  35 FILSAVFDNRLGPTIKYQYPKSIPGfkypssssllspgspnnssnpDEPL-NLANLMLPNNVEKTPGkaDFTVFILYHNKITQTYQLFPPSSKKIKNAV 132
                 7********************************************99999.*************************************99999999888 PP

        Afi1  77 kkkksededdvdeedeeeeddnedldelskdeeek.agegepllyvlnvvntkkDktv 133
                  +++ +++ + d+ +  ++  ++d++    d+ +  +++ e +l+++nvvnt+ D+t+
  CCD23810.1 133 VHSSANNTPKYDKLKRYSILVEDDET---ADKVDAlKTTAEAPLFFINVVNTVLDETN 187
                 88877765555555555555555553...46666668889999************986 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.8
        Afi1  52 fLykdtsteee 62 
                 ++ +++s++++
  CCD23810.1 508 TISSNNSSNHD 518
                 22233332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (948 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       912  (0.0508673); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 6515.04
//
Query:       CCD23811.1  [L=564]
Description: hypothetical protein NDAI_0C01500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-62  208.9   0.6    9.5e-62  207.0   0.4    2.0  2  AIRC             AIR carboxylase
    4.2e-59  198.9   0.0    6.4e-59  198.4   0.0    1.3  1  ATP-grasp        ATP-grasp domain
    5.8e-16   57.9   0.0    1.1e-15   57.0   0.0    1.5  1  PurK_C           Phosphoribosylaminoimidazole carboxylase C-t
    3.1e-05   23.6   0.0    5.3e-05   22.8   0.0    1.4  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
     0.0012   18.3   0.0     0.0032   16.8   0.0    1.8  1  2-Hacid_dh_C     D-isomer specific 2-hydroxyacid dehydrogenas
  ------ inclusion threshold ------
      0.023   14.2   0.0       0.16   11.5   0.0    2.2  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
      0.044   13.4   0.4        9.1    5.8   0.1    2.6  2  PrpR_N           Propionate catabolism activator
      0.044   14.0   0.1      0.091   13.0   0.1    1.5  1  TrkA_N           TrkA-N domain
      0.061   13.4   0.0       0.22   11.5   0.0    2.1  2  ATP-grasp_3      ATP-grasp domain
        0.1   11.8   0.1        0.3   10.4   0.1    1.7  1  AlaDh_PNT_C      Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> AIRC  AIR carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.76   1.4e+03       5      35 ..      50      80 ..      49      90 .. 0.82
   2 !  207.0   0.4   5.3e-65   9.5e-62       2     144 ..     397     539 ..     396     543 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.76
                EESSGGGHHHHHHHHHHHHHTT-EEEEEE-- CS
        AIRC  5 imGSdsDlevmkkaaeilkelgveyevrvvS 35
                i+GS  D + +++ a+ ++ l++e+e   + 
  CCD23811.1 50 IIGSFNDPHAIEELASKCDVLTIEIEHVNIE 80
                789999**************99999865555 PP

  == domain 2  score: 207.0 bits;  conditional E-value: 5.3e-65
                 EEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHCHTTTEEEEEEEEESS--HHHHHHHHSSS-EEEEEE--STTCCHHHHHHHH CS
        AIRC   2 VgiimGSdsDlevmkkaaeilkelgveyevrvvSahrtpeelleyaeeaeerglkviIagAGgaahLpgvvaslttlPVigvPvkskalkgldsllSiv 100
                 VgiimGSdsDl+vm++ ++il+++gv++ev++vSahrtp+++ +ya ea++rglk+iIagAGgaahLpg+va++t+lPVigvPvk + l+g+dsl+Siv
  CCD23811.1 397 VGIIMGSDSDLPVMSAGCKILEQFGVPFEVTIVSAHRTPHRMSKYAIEASQRGLKAIIAGAGGAAHLPGMVAAMTSLPVIGVPVKGSCLDGVDSLHSIV 495
                 9************************************************************************************************** PP

                 T--TTS--EE-SSTHHHHHHHHHHHHHTTT-HHHHHHHHHHHHH CS
        AIRC 101 qmPsgvpvatvaigkaknAallAaqilalkdeelaekleeyree 144
                 qmP+gvpvatvai++++nAallA++il+  d+++ + ++++  +
  CCD23811.1 496 QMPRGVPVATVAINNSTNAALLAVRILGSYDNKYFKLMNDFLLK 539
                 *******************************9988887776555 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.4   0.0   3.6e-62   6.4e-59      16     171 .]     131     286 ..     114     286 .. 0.95

  Alignments for each domain:
  == domain 1  score: 198.4 bits;  conditional E-value: 3.6e-62
                 CHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHCGTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEEEEETTEEEEEEECEE- CS
   ATP-grasp  16 skeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqalealkeekvivEefvpfekElsvlvvrsaeGetafypvvetvqedgilrlsvapaev 114
                 + ++l+++ +elg+p+v+K+r+ +ydG+G++v++s++d+ q l +lk++++++E+++pf kEl+v+v+rs +G++ +ypvvetv++d+i++l++apa+v
  CCD23811.1 131 TVDNLKQIGNELGYPFVLKSRTFAYDGRGNFVIKSQDDIVQGLVTLKDRPLYAEKWAPFIKELAVMVIRSIDGKIFSYPVVETVHQDNICHLCYAPARV 229
                 45699********************************************************************************************** PP

                 SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS--GGGGGHHHHB CS
   ATP-grasp 115 sekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapRpHnsGhvtldaa 171
                 ++++q++a+ +a+++v+++  +G+f+vE+F++edgel+vnE+apRpHnsGh+t+d++
  CCD23811.1 230 PDSIQETAKLLAENAVQSFRDCGIFGVEMFLMEDGELFVNEIAPRPHNSGHYTIDSC 286
                 *******************************************************98 PP

>> PurK_C  Phosphoribosylaminoimidazole carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   6.2e-19   1.1e-15       1      55 [.     317     374 ..     317     375 .. 0.88

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 6.2e-19
      PurK_C   1 avMvNlLGedaeeklee......llaipgahlHlYgKeearpgRKmGHitvvgdsaeelee 55 
                 a+M+N+LG ++   ++e      +l++ g++++lYgKe +rp+RK+GHi+++++s++++e+
  CCD23811.1 317 AIMLNVLGGNTA--NSElefckkALETAGCSVYLYGKE-SRPKRKVGHINIISSSMKDCER 374
                 89*********6..333445666***************.******************9987 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     3e-08   5.3e-05       1     179 [.     106     274 ..     106     289 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 3e-08
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEE.TTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviika.afglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEv 97 
                  Dk   k  l k  +  v+s + p +t+++  +i +e+gyP ++k+ +f+  G+G  v+++++++++ + +  +        + ++ ek+    ke+ v
   CCD23811.1 106 DKFLQKGHLTKNSIAAVKSIPIPENTVDNLKQIGNELGYPFVLKSrTFAYDGRGNFVIKSQDDIVQGLVTLKD--------RPLYAEKWAPFIKELAV 195
                  5666677788889999****************************8689***************9998765544........459************** PP

                  EEEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--..HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS CS
  CPSase_L_D2  98 evlrDakgnvitvcerenslqlrtqkvievAPsqtLt..deerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtR 179
                   v+r  +g +      e + q      +  AP+++ +  +e+ + l e+av+  r++g+ g   ve  l + ++e +v E+ +R
   CCD23811.1 196 MVIRSIDGKIFSYPVVETVHQDNICH-LCYAPARVPDsiQETAKLLAENAVQSFRDCGIFG---VEMFLME-DGELFVNEIAPR 274
                  ********999998888887765544.56899998773357889999**********9998...4544443.678888888777 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.8e-06    0.0032      36      99 ..       3      74 ..       1      79 [. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.8e-06
                  TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH....CHHHHTC....EECSHHHHHHH-SEEEE-S CS
  2-Hacid_dh_C 36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkee....eeeelgv....elvsleellaesDivslhl 99
                   +tvGi+G G++G+ + + ++ +++k i+ d   ++ +    + +++ +    + + +eel +++D++++ +
    CCD23811.1  3 TRTVGILGGGQLGRMLVEAANRLNVKTIILDEAVDSPAkqisNSKDHIIgsfnDPHAIEELASKCDVLTIEI 74
                  68***************************9998775444454333332221234558999999999999865 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.7e-05      0.16     125     176 ..     224     275 ..     108     277 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.7e-05
                      ESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEESS- CS
  Dala_Dala_lig_C 125 evpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNtlP 176
                        pa+++++++e+ + la +a +     G+  v +fl e+ge+++nE+ + P
       CCD23811.1 224 YAPARVPDSIQETAKLLAENAVQSFRDCGIFGVEMFLMEDGELFVNEIAPRP 275
                      469*********************************************8877 PP

>> PrpR_N  Propionate catabolism activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0051       9.1      66     114 ..      42      91 ..      16      95 .. 0.87
   2 ?    5.2   0.0     0.008        14      20      86 ..     441     515 ..     424     534 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0051
      PrpR_N  66 qakklg.ekialvgfeniikglktlselldldieiytinseeeaeaavke 114
                 q+ + +   i+ ++ +++i++l++ +++l ++ie+  i+  + ++++  +
  CCD23811.1  42 QISNSKdHIIGSFNDPHAIEELASKCDVLTIEIEHVNIEALKNVQTKYPK 91 
                 5555563458999999***********************99999887655 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.008
      PrpR_N  20 lakeleaegvdviiSrGgtae....llrkhvsvPVveikvsgy.....Dilralkqakklgekialvgfeniikgl 86 
                 +a e+ ++g ++ii++ g a+    ++ + +s+PV+ ++v+g      D l+++ q+ +    +a v+ +n ++++
  CCD23811.1 441 YAIEASQRGLKAIIAGAGGAAhlpgMVAAMTSLPVIGVPVKGScldgvDSLHSIVQMPRGVP-VATVAINNSTNAA 515
                 5667778899999998777772333457788*******997632211144444444444444.7777777766665 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   5.1e-05     0.091       3      97 ..       8      99 ..       6     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.1e-05
                EES-SHHHHHHHHHHHH.TTEEEEEEESSHHH.HHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEEE-SSSHHHHHHHHHHHHHHTSSSEEEEEES CS
      TrkA_N  3 iiGlGrvGrslaeeLse.ggkdvvvidkdeer.veelreeglevvvgdatdeevLeeagiekadaviaatgddeanilavllakelnpkkkiiaraq 97
                i+G G++Gr l+e  ++ + k  ++ d   +  ++++++ + + ++g+  d++++ee+ ++k+d+   +++   +ni a++++++  pk+ki+  ++
  CCD23811.1  8 ILGGGQLGRMLVEAANRlNVK-TIILDEAVDSpAKQISNSK-DHIIGSFNDPHAIEEL-ASKCDV--LTIEIEHVNIEALKNVQTKYPKLKIYPTIE 99
                99***************6665.6666666544377776555.6899**********99.578885..5666688***************99876555 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00012      0.22     104     159 ..     223     276 ..     104     278 .. 0.76
   2 ?   -2.5   0.0       2.6   4.7e+03      78     111 ..     321     354 ..     314     383 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                  EEEEEEES----HHHHHHHHHHHHHTTSTT--EEEEEEEE.ESS.SEEEEEEESS-- CS
  ATP-grasp_3 104 vyaGnvtpietelkeevvelaeevvekleglaGyvGvDlv.lkdeepyviEvNPRlt 159
                  +ya   +p     +e +  lae++v+++    G++Gv++  ++d+e+ v E+ PR+ 
   CCD23811.1 223 CYAPARVPDS--IQETAKLLAENAVQSF-RDCGIFGVEMFlMEDGELFVNEIAPRPH 276
                  5555544444..477777899*******.667*****96527779999*******96 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.6
                  EEEE.SSSEEEEEEEEEEEET....TEEEEEEES CS
  ATP-grasp_3  78 sllsdgekvlvlavnrqliekaekefvyaGnvtp 111
                  ++l+ +  ++ l ++++ +e+a+ ++   G+ + 
   CCD23811.1 321 NVLGGNTANSELEFCKKALETAGCSVYLYGKESR 354
                  6677777777788888887777776666665543 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00017       0.3      30      95 ..       5      70 ..       2      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
                 EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHH.HHHHHHTTTCECEEHCHHHHHHHHHHHH-SEE CS
  AlaDh_PNT_C 30 kvlviGgGvaGlqAiatakglgakVtvlDvrpar.leqleslgakfvevlksqeellaeavkeadvv 95
                 +v ++GgG  G   +++a++l+ k+ +lD   +  ++q+++ + + +    ++ ++++e ++++dv+
   CCD23811.1  5 TVGILGGGQLGRMLVEAANRLNVKTIILDEAVDSpAKQISNSKDH-IIGSFNDPHAIEELASKCDVL 70
                 578**************************9988725666667777.777889999**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4170.56
//
Query:       CCD23812.1  [L=1181]
Description: hypothetical protein NDAI_0C01510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-41  140.6   0.7    8.7e-41  139.3   0.7    1.7  1  RhoGAP    RhoGAP domain
    9.8e-11   41.7  32.0      8e-06   26.0  11.9    2.8  3  LIM       LIM domain
  ------ inclusion threshold ------
       0.19   11.8   9.6      0.041   13.9   3.9    2.8  2  DHR10     Designed helical repeat protein 10 domain
        1.2   10.1   0.0        1.2   10.1   0.0    3.8  4  DUF4065   Protein of unknown function (DUF4065)


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.7   1.9e-44   8.7e-41       1     147 [.     986    1152 ..     986    1157 .. 0.93

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 1.9e-44
                  BHHHHHHHHHHHHHT..TTSTTTTTS-S-HHHHHHHHHHHHHTGGGCTTTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHH... CS
      RhoGAP    1 Piivekcvefiekrg..ldtegiyRvsgskarvkelreafdkgkavdsdleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeer... 92  
                  P++++ c+++ie+ +  l+teg+yR+sgs+ +++e++++f +g+  + dl+ +d+h+v+s+LKr+Lr+l +pLlt+e+ye+li++++ ++  +    
  CCD23812.1  986 PFVITTCLAEIESTEenLKTEGLYRKSGSQLVIEEIENEFANGTFHSFDLTTYDIHVVTSILKRYLRKLYNPLLTFEIYESLIALVRDNQLVTTlpl 1082
                  99***********6657****************************999***********************************98888666666777 PP

                  ...............HHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT-T CS
      RhoGAP   93 ...............lealkellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrpk 147 
                                 le l ++l++LPk++ d+L+ L +h + ++  s++n M+++nLa+vfaP L+r+ 
  CCD23812.1 1083 sdaehietqqlfekvLEVLGNILKTLPKQHLDLLKLLSRHVNLITHFSEWNLMNMNNLALVFAPGLIRDL 1152
                  777778889999999****************************************************985 PP

>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   8.4   5.3e-09   2.4e-05       1      53 [.      19      72 ..      19      75 .. 0.85
   2 !   26.0  11.9   1.8e-09     8e-06       1      56 [.      76     131 ..      76     133 .. 0.96
   3 ?   -3.3   0.1       2.6   1.1e+04       9      24 ..     504     519 ..     501     520 .. 0.66

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 5.3e-09
                -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT...CEEETTEEEEHHH CS
         LIM  1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegs..fyekdgklyCkkd 53
                C +C+++i+  +   +  d++wH +CF C +C+k L+ +s  +++  g l C ++
  CCD23812.1 19 CVRCKDSITTGHAY-ELGDDKWHTHCFSCYKCDKLLSCDSdfLVLGTGALICFDC 72
                99*******88888.89*******************9998744444558888777 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 1.8e-09
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT.CEEETTEEEEHHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegsfyekdgklyCkkdylk 56 
                 C++C+kki d  ++l+ +++ +  +CF+C++C++++++ +++ ++  l+C +++ k
  CCD23812.1  76 CKNCGKKIDDLAIILSSSNEAYCSDCFKCCKCGENITDLRYAKTKRGLFCLNCHEK 131
                 ***************************************98888889******976 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.6
                 -TTTEEEEETTEEEET CS
         LIM   9 adrelvlkaldkvwHe 24 
                 ++++     ++k +H 
  CCD23812.1 504 TSQQSQSTRNNKEYHH 519
                 545555557999**96 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3      0.59   2.6e+03      65      85 ..     340     360 ..     337     364 .. 0.85
   2 ?   13.9   3.9   9.1e-06     0.041       8      57 ..     787     836 ..     783     848 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.59
       DHR10  65 aleekeielrelerkeerlqr 85 
                 +l++++++ +e++++++ l+r
  CCD23812.1 340 ELNDNTKNNKEINNQKQSLNR 360
                 688999999999999999987 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 9.1e-06
       DHR10   8 keelaelErkarelqakidalqvvekdlrsciklleeieaelakleeakk 57 
                 k  ++elE k ++l + id++q  ++dl+++i+ l + ++el ++e+ ++
  CCD23812.1 787 KLDIKELELKKQKLITEIDSMQATKNDLAETIESLRKEKNELGSTESLDR 836
                 7789**************************************99998776 PP

>> DUF4065  Protein of unknown function (DUF4065)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00026       1.2       6      71 ..      97     155 ..      96     192 .. 0.70
   2 ?   -3.1   0.6       3.2   1.4e+04      52      58 ..     285     291 ..     252     323 .. 0.46
   3 ?   -2.5   1.1       2.1   9.2e+03      66      84 ..     367     389 ..     334     429 .. 0.55
   4 ?   -1.6   0.0       1.1   5.1e+03      79      97 ..    1019    1052 ..     980    1060 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00026
     DUF4065   6 YfadflhlkrtgkpitglkyiawkyGPVvpevydeikelgskpieekeeeisdeklekkekkevee 71 
                 Y +d   + ++g+ it+l+y++ k G +  + ++++ ++++k +e k+ e +          ++ +
  CCD23812.1  97 YCSDCFKCCKCGENITDLRYAKTKRGLFCLNCHEKLLAKRKKYEESKRLERK-------SLPNIPQ 155
                 77899999********************999999999888775555544433.......2222222 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.2
     DUF4065  52 keeeisd 58 
                 ++++ ++
  CCD23812.1 285 EKNNATN 291
                 1111111 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.1
     DUF4065  66 kkeveeleddkeae....lseee 84 
                  +e+  l+++k+++    ls++e
  CCD23812.1 367 SNEIGLLKSPKSYRrgmiLSDNE 389
                 44444444444444444433333 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.1
     DUF4065   79 e...............lseeekevidkvikkykd 97  
                  e               l+  ++ v+  ++k+y  
  CCD23812.1 1019 EeienefangtfhsfdLTTYDIHVVTSILKRYLR 1052
                  0222223345556777999999999999999966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2082  (0.116125); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.93u 0.31s 00:00:01.24 Elapsed: 00:00:00.52
# Mc/sec: 6855.05
//
Query:       CCD23813.1  [L=229]
Description: hypothetical protein NDAI_0C01520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-20   74.7   0.0    1.5e-20   74.4   0.0    1.1  1  Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
      4e-15   56.3   0.0    1.3e-14   54.6   0.0    1.7  1  Lipase_GDSL    GDSL-like Lipase/Acylhydrolase


Domain annotation for each model (and alignments):
>> Lipase_GDSL_2  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0   1.6e-24   1.5e-20       1     179 []       7     191 ..       7     191 .. 0.77

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 1.6e-24
                    EEESHHHHTCTTBCCHCHHCCCCCCCHHHTT-EEEEE.EEHCCH-H...HHHHHHHHCTGGG-TSEEEEE--CCC....CCTT--HHHHHHH..HH CS
  Lipase_GDSL_2   1 alGDSiTaGygadgggrsypaylarllaarlgldvvnnlgvsGatt.allrllerlrdllrlkpdlvtiliGtND....lgrgvpaaaaaandnle 91 
                    ++GDSiT+    +++  +++a+  + ++++l  d +  +g+ G+++ ++l +l+++ + +     l t+++G+ND      ++vp +++++n    
     CCD23813.1   7 FFGDSITEFAYQPDQFTTGSAL-NAIYSRKL--DIIH-RGYAGYNSrWGLKILPKILEQDGEGVVLSTLFFGANDsciaGPQRVPIDEFKEN--TL 96 
                    8*******44444888888888.99999999..7777.********9999999999988888889**********76543444455555555..99 PP

                    HHHHHHCCC...GEEE..........CEEEEE-TTT-TTSTCCHHHHHHHHHHHHHHHHHHCT-EEE-HHHHHHHCC.CCCGGBBTTS.SSB-HHH CS
  Lipase_GDSL_2  92 elidalraaapgaril..........vlgplpptpeaaadarelnaviaaynealrevaaeegvpfvDlhdaladsg.erladlladdglHPnaaG 176
                    ++++  +++  +++++           ++   p + ++++ r +++  ++y ++l++ a  ++ +fvDl++a+ + g +++++ll+d+ lH++++G
     CCD23813.1  97 AMLKLFQEK--NIKVVvvgpalldrpRWESNRPEETKMGYLR-TEEEFQKYGQVLKACAHLTNSAFVDLNKAFIEKGgDDWRELLTDG-LHFSGKG 188
                    *********..5555544888884444344444444444443.4899**********************7777555538888888887.******* PP

                    HHH CS
  Lipase_GDSL_2 177 yrl 179
                    y++
     CCD23813.1 189 YEI 191
                    *86 PP

>> Lipase_GDSL  GDSL-like Lipase/Acylhydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   1.5e-18   1.3e-14       2     199 ..       6     195 ..       5     196 .. 0.75

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 1.5e-18
                  EEEESHHHH.TTTHHHHHHHCCCCEECCCTTC.GCEEEEEEECTTHHHHHHHCCHECTTTECHHHHHCTTS.....EEEEE--CTCC-EECSSCTTTC CS
                  xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx RF
  Lipase_GDSL   2 vafGDSltd.Gdgaatlntiqlktpknlnefdlaldrianignkgasdnelqqllnkyplkseqlkalhpd.....lviislGtNDsnlgkkstdaak 93 
                  ++fGDS+t+       +   q+ t++ ln++   +++i   g+ g++++   + l          k l +d     l ++++G+NDs      + ++ 
   CCD23813.1   6 LFFGDSITEfA-----YQPDQFTTGSALNAIYSRKLDIIHRGYAGYNSRWGLKIL------P---KILEQDgegvvLSTLFFGANDS----CIAGPQR 85 
                  79*****9742.....333333333333333322345566666666666666666......2...34555555666***********....88899** PP

                  EEHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSTCH.....CTCCCCHCCHHHHHHHHHHHHHHHHHHHHHCTEEEECHHHHHHHTHCCGCHCH..T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
  Lipase_GDSL  94 keaeeyiknlreaikelkeegapkaivvlvsppglgp.....qeekdakklgekgnefvgeynqrlndlaekdgfavvDlydelqglsgieqlka..D 184
                   +++e+++n   ++k       ++++vv+v+p  l +     ++ +++k  + ++ e  ++y q+l++ a   + a+vDl++ ++++ g ++ +   D
   CCD23813.1  86 VPIDEFKENTLAMLKLFQ---EKNIKVVVVGPALLDRprwesNRPEETKMGYLRTEEEFQKYGQVLKACAHLTNSAFVDLNKAFIEKGGDDWRELltD 180
                  ***************555...567**************99985555566666678888899**************************5555555577* PP

                  SSSB-HHHHHHHHHH CS
                  xxxxxxxxxxxxxxx RF
  Lipase_GDSL 185 glHpsekgyeklael 199
                  glH+s kgye+ +++
   CCD23813.1 181 GLHFSGKGYEIFFDE 195
                  **********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1729.74
//
Query:       CCD23814.1  [L=486]
Description: hypothetical protein NDAI_0C01530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-45  155.3   0.0    2.7e-45  154.6   0.0    1.3  1  BCS1_N           BCS1 N terminal
    2.3e-21   76.6   0.0    5.8e-21   75.3   0.0    1.7  1  AAA              ATPase family associated with various cellul
    0.00026   20.8   0.0     0.0025   17.6   0.0    2.2  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00053   19.2   0.0    0.00088   18.5   0.0    1.3  1  DUF815           Protein of unknown function (DUF815)
    0.00081   19.8   0.0      0.009   16.4   0.0    2.5  2  AAA_16           AAA ATPase domain
     0.0014   18.2   0.0     0.0029   17.1   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
     0.0017   18.3   0.0       0.35   10.8   0.0    3.0  3  NACHT            NACHT domain
     0.0046   17.0   0.0      0.013   15.5   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0047   17.5   0.0      0.014   15.9   0.0    1.8  1  AAA_18           AAA domain
     0.0058   16.8   0.0     0.0093   16.1   0.0    1.4  1  AAA_33           AAA domain
     0.0082   15.9   0.0       0.03   14.0   0.0    2.0  2  AAA_24           AAA domain
  ------ inclusion threshold ------
       0.02   15.4   0.0      0.042   14.4   0.0    1.6  1  ABC_tran         ABC transporter
      0.024   15.0   0.0      0.096   13.1   0.0    2.1  1  RNA_helicase     RNA helicase
      0.031   14.0   0.0      0.073   12.8   0.0    1.6  1  AAA_29           P-loop containing region of AAA domain
      0.048   13.5   0.0      0.091   12.5   0.0    1.5  1  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.051   13.4   0.0      0.086   12.6   0.0    1.3  1  AAA_11           AAA domain
      0.062   13.2   0.0        0.9    9.4   0.0    2.1  2  Rad17            Rad17 P-loop domain
      0.067   12.5   0.0       0.12   11.7   0.0    1.3  1  ATPase           KaiC
      0.074   13.3   0.0       0.15   12.3   0.0    1.5  1  AAA_22           AAA domain
       0.13   12.2   0.0       0.28   11.1   0.0    1.5  1  ATPase_2         ATPase domain predominantly from Archaea
       0.14   12.1   0.5        0.3   11.0   0.5    1.5  1  Gram_pos_anchor  LPXTG cell wall anchor motif
       0.16   12.0   0.0       0.31   11.1   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.19   11.6   0.0       0.32   10.9   0.0    1.3  1  MAPEG            MAPEG family
        1.8    9.3   5.1        3.3    8.4   5.1    1.4  1  IMUP             Immortalisation up-regulated protein


Domain annotation for each model (and alignments):
>> BCS1_N  BCS1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.6   0.0   3.7e-48   2.7e-45       1     187 []      73     240 ..      73     240 .. 0.95

  Alignments for each domain:
  == domain 1  score: 154.6 bits;  conditional E-value: 3.7e-48
      BCS1_N   1 lgallaaarrllselaslirrrflvsveissdDeaydwvlaWlsaqpasrrsrelsvetrtksrssdssaeedededeeedgkkkkplrylPavgtthl 99 
                 lg  la+ar+++ +l +l+ +++++++ei+s+D++y w+l+W+s+qp  r sr+lsv+t++ ++++ s+               +++++++P++g +h+
  CCD23814.1  73 LGSGLALARSSAIKLSRLLYKQMIIDLEIPSKDKSYSWILTWISKQP-KRVSRHLSVRTSYVQHDNGSI---------------NTKFSMVPGPG-NHW 154
                 578899****************************************8.6799***********973333...............559********.6** PP

      BCS1_N 100 frykgrllavtRereekssdsetgapeetltltclgrsreilkeLleearelalkkqegktviyraaagsggeWrrvas.RpkRplstV 187
                 +rykg++++++Rer++k+ d+ ++ap et+tl +l+r+r ++k++l+ea++ a+k++egktviy++    g+eWrr+++ + kR l +V
  CCD23814.1 155 IRYKGAFIMIKRERSGKMVDLINSAPYETVTLVTLYRDRGLFKDILDEAKQIAMKDTEGKTVIYTSF---GPEWRRFGQpKGKRTLASV 240
                 *****************************************************************55...*****************99 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.0   7.8e-24   5.8e-21       2     130 ..     276     398 ..     275     400 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 7.8e-24
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH..TTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr..sgseseeeervvnqLlteldgvkk 98 
                 llyGppG GKT++++a+a el+ +++ +++se        + +++++l++++ e    sil++++ida + +r  + +   ++  + + Ll++ldgv++
  CCD23814.1 276 LLYGPPGSGKTSFIQALAGELDYNICILNLSENN-----LTDDRLNHLMNNMPER---SILLLEDIDAAFDKRsqTIEGGYQSHVTFSGLLNALDGVTS 366
                 9*********************999999999988.....88********998776...6**************54334666788899************ PP

                 SSSTEEEEEEESSGGGSTHHHHS.TTSSEEEET CS
         AAA  99 keskvivigatnrpdkldpallr.gRfdrkiei 130
                 +e+ +i  ++tn+ +kldpa+lr gR+d ++ +
  CCD23814.1 367 SEE-TITFMTTNHREKLDPAILRpGRIDYQVLV 398
                 866.************************98766 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.77   5.8e+02     127     156 ..      20      49 ..      11      52 .. 0.84
   2 !   17.6   0.0   3.4e-06    0.0025      37      94 ..     276     334 ..     271     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.77
      RuvB_N 127 kldlpkftlvgattragllssPlrdrfgiv 156
                 + ++p+ t + at  a +++ P+ + f+++
  CCD23814.1  20 NSNIPNATPIKATPTAETITPPINNEFSFN 49 
                 557899999****************99886 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 3.4e-06
      RuvB_N  37 llyGpPGlGkttlakiiakelgvklkitsgPvlekagd.laalltnleekdvlfideih 94 
                 llyGpPG Gkt++ + +a el+ ++ i      + + d l  l++n+ e+ +l++++i 
  CCD23814.1 276 LLYGPPGSGKTSFIQALAGELDYNICILNLSENNLTDDrLNHLMNNMPERSILLLEDID 334
                 9***********************98876555444443389999999999999999885 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.2e-06   0.00088      56     152 ..     275     379 ..     249     386 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.2e-06
      DUF815  56 vLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellrerperfilfvDDL..sFeeeeeey..........ksLksvLeGsleakpen 142
                  LL+G  G+GK s ++al  e+   ++ ++++++++l++ ++l +l++++per il++ D+  +F+++ ++             L  +L+G  +  +e+
  CCD23814.1 275 YLLYGPPGSGKTSFIQALAGELD-YNICILNLSENNLTD-DRLNHLMNNMPERSILLLEDIdaAFDKRSQTIeggyqshvtfSGLLNALDGVTS--SEE 369
                 69*****************9986.568999*******98.899999************987558998876543333444333446666666433..344 PP

      DUF815 143 vliyaTsNrR 152
                  + + T+N+R
  CCD23814.1 370 TITFMTTNHR 379
                 4555666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       3.7   2.8e+03      62      91 ..     174     205 ..     158     236 .. 0.74
   2 !   16.4   0.0   1.2e-05     0.009      25      51 ..     273     299 ..     263     363 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 3.7
      AAA_16  62 qlesaipy..salaqalareellrqlldeaes 91 
                 +l  ++py  ++l+++   ++l++++ldea++
  CCD23814.1 174 DLINSAPYetVTLVTLYRDRGLFKDILDEAKQ 205
                 44445788755588888888999999999443 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.2e-05
      AAA_16  25 elvllsGesGvGKsslvrellralekd 51 
                 +  ll+G++G+GK+s +++l+ +l  +
  CCD23814.1 273 RGYLLYGPPGSGKTSFIQALAGELDYN 299
                 789*****************9888766 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.9e-06    0.0029      11      85 ..     248     321 ..     241     327 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.9e-06
       AAA_7  11 eilVptvdtvry..syllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesk 85 
                 e +V+ v+  r+  ++  +  +  ++  ll+Gp G+GKt+ i+ l  +ld   y++ ++n+s +    +  + ++++
  CCD23814.1 248 ENIVKDVEEFRNngKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELD---YNICILNLSENNLTDDRLNHLMNN 321
                 56777777777633488889999999************************...888888888776555555555555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.081        61     102     142 ..     104     143 ..      89     153 .. 0.85
   2 !   10.8   0.0   0.00047      0.35       4      24 ..     276     296 ..     273     304 .. 0.88
   3 ?   -1.0   0.0         2   1.5e+03      75     114 ..     318     359 ..     299     384 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.081
                 .......HHHHHCTTTTT--EEEEEEECCCHHHHCTTSSCE CS
       NACHT 102 kqpvrtlLselirkkllpeasllltvrpralrdleeqleea 142
                 k ++  ++ ++i+k  ++++s  l+vr++ +++   ++ ++
  CCD23814.1 104 KDKSYSWILTWISK-QPKRVSRHLSVRTSYVQHDNGSINTK 143
                 566789********.9***************9998888877 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00047
                 EEEC-TTTCHHHHHHHHHHHH CS
       NACHT   4 ilqGeaGsGKTtLlqklalaw 24 
                 +l G++GsGKT ++q la ++
  CCD23814.1 276 LLYGPPGSGKTSFIQALAGEL 296
                 799*************99776 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 2
                 HHCCSCCCEEEEEE-STT-SS-TCH...........HHHHHC CS
       NACHT  75 vllelperlLlilDglDelvtdlgq..kekqpvrtlLselir 114
                 ++   per  l+l ++D + ++ +q  ++  ++++ +s+l++
  CCD23814.1 318 LMNNMPERSILLLEDIDAAFDKRSQtiEGGYQSHVTFSGLLN 359
                 455678999999999999999988877444444444444443 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.7e-05     0.013       3      44 ..     276     313 ..     274     344 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.7e-05
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH-- CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgr 44 
                 lL GppG+gK+++++ la  l  ++ + +l+++    +l+  
  CCD23814.1 276 LLYGPPGSGKTSFIQALAGELDYNICILNLSEN----NLTDD 313
                 9******************99999999888764....33333 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.9e-05     0.014       2      44 ..     276     317 ..     276     363 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.9e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf........gvnlrdvakenglllevdpe 44 
                 ll G+pG+GKt++ ++L+ +l +                  n+l +++ ++
  CCD23814.1 276 LLYGPPGSGKTSFIQALAGELDYnicilnlsE---------NNLTDDRLNH 317
                 589**************998744445533331.........3333333333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-05    0.0093       3      39 ..     276     317 ..     275     381 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
      AAA_33   3 llvGlpGsGKstlaerllkklg...avl.lssdtlrr.rlfg 39 
                 ll G+pGsGK+ +++ l+ +l+   ++l ls+++l + rl  
  CCD23814.1 276 LLYGPPGSGKTSFIQALAGELDyniCILnLSENNLTDdRLNH 317
                 578*******************88633347777776634433 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.9   1.4e+03      48      70 ..     195     217 ..     156     262 .. 0.61
   2 !   14.0   0.0     4e-05      0.03       5      31 ..     275     305 ..     271     382 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.9
      AAA_24  48 swedfldevvelaaeladyktlv 70 
                  ++d+lde++++a ++ + kt++
  CCD23814.1 195 LFKDILDEAKQIAMKDTEGKTVI 217
                 34455555555544444433333 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4e-05
      AAA_24   5 iliyGpsgiGKTtlakel....gpkplfidt 31 
                 +l+yGp+g+GKT+++  l     +++ ++++
  CCD23814.1 275 YLLYGPPGSGKTSFIQALagelDYNICILNL 305
                 68*************9997766666666655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   5.6e-05     0.042      14      57 ..     275     318 ..     268     381 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.6e-05
                 EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkpteGeilldgkdlkeqelesl 57 
                 + + G+ G+GK++++++lag+l+ +   ++l +++l++++l++l
  CCD23814.1 275 YLLYGPPGSGKTSFIQALAGELDYNICILNLSENNLTDDRLNHL 318
                 6799******************9987777777777777555554 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00013     0.096       2      26 ..     276     300 ..     275     345 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00013
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   +lyGp+g GK+++++ La +l  ++
    CCD23814.1 276 LLYGPPGSGKTSFIQALAGELDYNI 300
                   69***************99998776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   9.8e-05     0.073      15      42 ..     267     292 ..     259     296 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.8e-05
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDAi 42 
                 + i+ + +g +ll Gp GsGK++++ A+
  CCD23814.1 267 RGIPYR-RG-YLLYGPPGSGKTSFIQAL 292
                 556665.67.9**************997 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00012     0.091       3      26 ..     276     304 ..     275     342 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00012
      AAA_21   3 vliGpNgsGKSnLLdaldllarl.....d 26 
                 +l+Gp gsGK+++++al +  ++     +
  CCD23814.1 276 LLYGPPGSGKTSFIQALAGELDYnicilN 304
                 79***************765555655544 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00011     0.086      20      68 ..     275     338 ..     262     350 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00011
      AAA_11  20 tliqGPPGtgKTktivellsqllsr...............rkseeeksakpriLvCapSNaAvD 68 
                  l+ GPPG+gKT++i +l  +l  +                +  +++++++ iL+    +aA D
  CCD23814.1 275 YLLYGPPGSGKTSFIQALAGELDYNicilnlsennltddrLNHLMNNMPERSILLLEDIDAAFD 338
                 5899***************999622444444444444443225667777777777666666655 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0012       0.9      48      73 ..     275     300 ..     251     311 .. 0.87
   2 ?    1.4   0.0      0.35   2.6e+02     114     154 ..     310     346 ..     301     367 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0012
       Rad17  48 LLisGPsGCgkstvvkvLskelgikl 73 
                  L+ GP+G gk+  ++ L+ el +++
  CCD23814.1 275 YLLYGPPGSGKTSFIQALAGELDYNI 300
                 6899****************998875 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.35
       Rad17 114 LkdakylklqklGddlrtdkklilvedlPnkfyrdsdalre 154
                 L d + + l     +   +++++l+ed+   f + s++++ 
  CCD23814.1 310 LTDDRLNHLM----NNMPERSILLLEDIDAAFDKRSQTIEG 346
                 5555555554....566789************999998765 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00016      0.12      13      37 ..     266     290 ..     242     299 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00016
      ATPase  13 kgGipegrvvlitGepGtGKtifal 37 
                 ++Gip +r +l++G pG+GKt f +
  CCD23814.1 266 DRGIPYRRGYLLYGPPGSGKTSFIQ 290
                 48*******************9865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0002      0.15       8      30 ..     275     297 ..     270     360 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0002
      AAA_22   8 lvvtGesGtGKTtllrrlleqld 30 
                  +++G++G+GKT  ++ l+ +ld
  CCD23814.1 275 YLLYGPPGSGKTSFIQALAGELD 297
                 689***************99885 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00037      0.28      23      60 ..     275     308 ..     271     341 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00037
    ATPase_2  23 yfiYGpegsGKtaLlkeiienledkdkyviyyialree 60 
                 y++YGp gsGKt++++ ++ +l    +y i + +l+e 
  CCD23814.1 275 YLLYGPPGSGKTSFIQALAGEL----DYNICILNLSEN 308
                 899************9999888....345555555554 PP

>> Gram_pos_anchor  LPXTG cell wall anchor motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   0.00041       0.3      15      35 ..      59      79 ..      59      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00041
                     XXXXXXXXXXXXXXXXXXXXX CS
  Gram_pos_anchor 15 ngnifltaaGllallggllLl 35
                     ++n+++ a+G l++lg++l l
       CCD23814.1 59 ENNPIFAAGGGLMILGSGLAL 79
                     58*************999875 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00041      0.31      21      45 ..     274     298 ..     248     304 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00041
                 EEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  21 vilLeGdLGaGKTtlvrglakalgv 45 
                   lL+G+ G+GKT ++++la +l++
  CCD23814.1 274 GYLLYGPPGSGKTSFIQALAGELDY 298
                 489****************998875 PP

>> MAPEG  MAPEG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00043      0.32      57     119 ..      55     115 ..      21     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00043
                 HHHHHHHHHHHHHHHHHHHH.T-HHHHHHHHHHHHHHHHHHHHHHHH-...SGGGHHHHHHHHH CS
       MAPEG  57 gNflEyvplfllavllaeltgaetglaallaaafvvaRvlhalgyiag.gpppgRslgflltll 119
                 +N +E+ p+f++   l++l    +gla +   a  ++R+l+  + i+   p+  +s++++lt++
  CCD23814.1  55 SNAMENNPIFAAGGGLMILG---SGLALARSSAIKLSRLLYKQMIIDLeIPSKDKSYSWILTWI 115
                 7******************8...78999999999***********99966777999*******7 PP

>> IMUP  Immortalisation up-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.1    0.0044       3.3      54      78 ..       6      30 ..       2      40 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0044
        IMUP 54 sdsssssssssdsdaeakphaagsk 78
                s+sssssssssd ++   p+a++ k
  CCD23814.1  6 SSSSSSSSSSSDGNNSNIPNATPIK 30
                6677777789999999998887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 3399.50
//
Query:       CCD23815.1  [L=243]
Description: hypothetical protein NDAI_0C01540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-73  244.1   0.1    7.8e-73  243.9   0.1    1.1  1  COQ7          Ubiquinone biosynthesis protein COQ7
     0.0077   15.6   0.2      0.026   13.9   0.0    1.8  2  DUF1978       Domain of unknown function (DUF1978)
     0.0089   16.4   0.1      0.032   14.6   0.0    2.0  2  Rubrerythrin  Rubrerythrin
  ------ inclusion threshold ------
       0.11   12.7   0.1       0.34   11.2   0.1    1.8  1  GA            GA module


Domain annotation for each model (and alignments):
>> COQ7  Ubiquinone biosynthesis protein COQ7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.9   0.1   1.7e-76   7.8e-73       2     172 .]      60     243 .]      59     243 .] 0.99

  Alignments for each domain:
  == domain 1  score: 243.9 bits;  conditional E-value: 1.7e-76
        COQ7   2 ldrllRvdhaGElgAvaiYkgqlavlakkdpelkpllkemleqEkeHlatfeellkerrvrpslllplwkvagfalGaltallGkeaamacteavEtvi 100
                 ldr++Rvd+aGElgA++iY+gq ++l++k+p+l+p+l++m+ qE +H++tf+el+ ++rvrpsll+plwkv+++a+Ga+tal++++aamacteavEtvi
  CCD23815.1  60 LDRVIRVDQAGELGANYIYQGQQFILSEKYPHLRPILRHMWLQEVHHHNTFNELQIRKRVRPSLLTPLWKVGAIAMGAGTALISPRAAMACTEAVETVI 158
                 89************************************************************************************************* PP

        COQ7 101 geHYneqlreleelee.............eedkelleiikqfrddEleHldtAvendaekapaykllsaviklgcrvaiavaeri 172
                 g+HYneqlr l+++ +             +e k++ e i+qfrddEleHldtA+end++ a++yk++++ +k++cr+a+++aeri
  CCD23815.1 159 GRHYNEQLRCLTNQFQlakvnekgetgmsPEVKDIVEKIRQFRDDELEHLDTAIENDSKLAVPYKVITEGVKTVCRIAVWTAERI 243
                 *************999********************************************************************8 PP

>> DUF1978  Domain of unknown function (DUF1978)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.23     1e+03      70     112 ..      22      64 ..      15      69 .. 0.81
   2 !   13.9   0.0   5.7e-06     0.026     151     216 ..     153     217 ..     142     237 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.23
     DUF1978  70 llkkleskyekareelekesskkNqkeleeaekellkalkdlk 112
                  lk+  s  + a+ +++k+ s     ++e++ +  + +l ++ 
  CCD23815.1  22 TLKQNASSSSPAKPKSNKQPSLTQIDQFENLSDAQIAYLDRVI 64 
                 5788888888899999999999999999999998888888775 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.7e-06
     DUF1978 151 dLetalgsiEeeyrevvrdQedywKeeekkelersaElrekgtkvkseEleeqlesleellkesse 216
                   et+ g+  +e   ++ +Q +  K++ek e  +s E+++   k++ +   ++le l+  +++ s+
  CCD23815.1 153 AVETVIGRHYNEQLRCLTNQFQLAKVNEKGETGMSPEVKDIVEKIR-QFRDDELEHLDTAIENDSK 217
                 678889998899999******************************9.777899******9998775 PP

>> Rubrerythrin  Rubrerythrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.2e-06     0.032       8      53 ..      69     114 ..      64     175 .. 0.86
   2 ?   -1.2   0.0      0.54   2.4e+03      30      47 ..     192     209 ..     183     238 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.2e-06
                   HHHHHHHHHHHHHHHCHHTT-HHHHHHHHHHHHHHHHHHHHHHHHH CS
  Rubrerythrin   8 agEssarrlYkelaekakegypqiaelFeelAeeEreHakilnkll 53 
                   agE  a  +Y+  +  + e+yp+++ +++ +  +E +H++ +n+l 
    CCD23815.1  69 AGELGANYIYQGQQFILSEKYPHLRPILRHMWLQEVHHHNTFNELQ 114
                   79****************************************9985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.54
                   HHHHHHHHHHHHHHHHHH CS
  Rubrerythrin  30 qiaelFeelAeeEreHak 47 
                   +i e+++++ ++E eH +
    CCD23815.1 192 DIVEKIRQFRDDELEHLD 209
                   444555555555555544 PP

>> GA  GA module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   7.6e-05      0.34      17      40 ..      38      61 ..      36      70 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.6e-05
          GA 17 aKqnAkqaInnLtnLNnaQkqalk 40
                +Kq   ++I++ +nL +aQ + l 
  CCD23815.1 38 NKQPSLTQIDQFENLSDAQIAYLD 61
                7******************88766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1972.86
//
Query:       CCD23816.1  [L=1295]
Description: hypothetical protein NDAI_0C01550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-55  187.6   0.4    6.9e-55  186.3   0.4    1.7  1  UCH       Ubiquitin carboxyl-terminal hydrolase
    2.9e-46  155.2   9.8    8.3e-19   67.3   0.5    5.2  4  RPT       A repeated domain in UCH-protein
    0.00052   19.7   5.5      0.036   13.7   0.2    2.8  3  UCH_1     Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.3   0.4   1.2e-58   6.9e-55       1     257 []     752    1276 ..     752    1276 .. 0.93

  Alignments for each domain:
  == domain 1  score: 186.3 bits;  conditional E-value: 1.2e-58
                  -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-............TT.TTS.TTH.........HHHHHHHHHHHHHSH-CCEE- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxx RF
         UCH    1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkel...........nesnplgkkge.........lakalkdlfkellkskskavs 77  
                  tG++N+GntCy+ns+lQ++fsi +lr+y+l ++++ ++  ++k +                               ++++l+dlf++++ +++++v+
  CCD23816.1  752 TGINNIGNTCYLNSLLQYYFSISPLREYVLGYSKTYEDFYDAKRNaktirriggreV---------GdneversiqFIYQLRDLFYAMIYTNKRCVT 839 
                  7****************************9987776665554444444466665532.........0444444444*************889***** PP

                  -................................................................................................ CS
                  x................................................................................................ RF
         UCH   78 P................................................................................................ 78  
                  P                                                                                                
  CCD23816.1  840 Prrelaylafapsnvevefengvtdakedvshynddktsdtlikigegdedlgeaerteasptediymtdddmlgaakatdginkedestengidil 936 
                  ************************************************************************************************* PP

                  ...HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE........................... CS
                  ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
         UCH   79 ...kklkktlsklaksfsgykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks........................... 145 
                     k  k + ++l++ +++++qqD++E++ ++L ql++ ++      +++ +++++d+l+++lf+g++k+                           
  CCD23816.1  937 pstKVAKISSDQLENALEMGRQQDVTECIGNVLYQLESGSEP----LQINPEDNEQDDLVKQLFYGEIKQdiiplsgvgetrpklerflsllvnvgd 1029
                  **8888888999999***************************....56699********************************************** PP

                  ............................EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-B.......... CS
                  ............................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......... RF
         UCH  146 ............................klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkkteekkk.......... 201 
                                              ++ ++++P+iL+++++R++y+++   + K+ +++ f  ++++++y+++ + +  e++++          
  CCD23816.1 1030 hprdiydaldmyfkdefltmdeygevkrTVAITKFPTILQVQIQRVYYDRErfmPFKSIEPLPFSAKIYMDRYVDTADPEILETRERtakmkaelvq 1126
                  *************************************************999***********************99999888777799******** PP

                  .......................................................................................EEEEEEEEEE CS
                  .......................................................................................xxxxxxxxxx RF
         UCH  202 .......................................................................................YeLiavvvHs 211 
                                                                                                         Y+L+av++H+
  CCD23816.1 1127 lkkrqqellsrnevglsrkeaysetvnflqsnalqlqgivfegqdelstilkkagtdiddelstiynqitqleetishqfeqfkkvgYSLFAVFIHR 1223
                  ************************************************************************************************* PP

                  SCTTSEEEEEEEE.CTTTTEEEEEETTEEEEE-HHCCCTT.......CEEEEEE CS
                  xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxx RF
         UCH  212 GslssGHYvayik.nekngkWykydDetvkevkeeeevls.......sayiLfY 257 
                  G++s+GHY++yik  ++ng W+ky+Detv+ev +e ev +       ++y+L+Y
  CCD23816.1 1224 GEASYGHYWVYIKdYNQNGIWRKYNDETVSEVPDE-EVFNftegntaTPYFLVY 1276
                  *************4345666*************88.66666777889******9 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.9e-06     0.017      15      57 ..     477     519 ..     467     520 .. 0.89
   2 !   22.5   0.1   1.4e-08   8.2e-05       2      58 ..     531     593 ..     530     594 .. 0.89
   3 !   67.3   0.5   1.4e-22   8.3e-19       2      58 ..     601     657 ..     600     658 .. 0.98
   4 !   53.0   0.1     4e-18   2.4e-14       1      58 [.     674     735 ..     674     736 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.9e-06
         RPT  15 tdDdviitayqvkleddpsqkdklrrALkvIAeeRkSelLlnf 57 
                  +D  ii+ y+  ++ dp ++ ++  AL+ IA+ + S+ L  +
  CCD23816.1 477 YTDRDIIKNYERLIALDPPNIGTYFDALSYIANRKGSYQLIAY 519
                 78999*********************************99766 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 1.4e-08
         RPT   2 veeAyklLgi......dentdDdviitayqvkleddpsqkdklrrALkvIAeeRkSelLlnfL 58 
                 ++ A+k ++i       e++dD++++++y+    ++ +++ +l++A++  A+ R+S  L+ ++
  CCD23816.1 531 INMALKCFNIdpnvvnLESIDDSLLLSIYKNESVKEGADFVNLKNAMRLFAKIRNSPQLKFYV 593
                 6789999**97777855669**********9998889**********************9885 PP

  == domain 3  score: 67.3 bits;  conditional E-value: 1.4e-22
         RPT   2 veeAyklLgidentdDdviitayqvkleddpsqkdklrrALkvIAeeRkSelLlnfL 58 
                 v++Ay++L+id+++dDd+i+tay++k+ d+p+ k++++rAL++IA++R+S +L+nfL
  CCD23816.1 601 VNQAYETLEIDSSVDDDIIQTAYSIKTVDAPGLKIDCDRALYTIAIQRRSMILFNFL 657
                 89******************************************************9 PP

  == domain 4  score: 53.0 bits;  conditional E-value: 4e-18
         RPT   1 dveeAyklLgidentdDdviitayqvkl.ed...dpsqkdklrrALkvIAeeRkSelLlnfL 58 
                 d+ +A+ +L+++en++D+vi++ +q+k+ ++   +++q+++++ AL++ + eR+S+l++nfL
  CCD23816.1 674 DYRQALGILQVNENANDEVILKNFQTKWfNEqihEADQFLNYKCALMKLGLERNSKLINNFL 735
                 799*************************97779666*************************9 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1       1.6   9.5e+03      91     123 ..      11      43 ..       6     104 .. 0.59
   2 !   13.7   0.2     6e-06     0.036       2      32 ..     753     783 ..     752     794 .. 0.84
   3 !    8.4   0.1   0.00025       1.5     254     318 ..    1175    1250 ..    1048    1252 .. 0.57

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 1.6
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  91 ekssaislssliqsfnrflldqlekelketkkn 123
                 +k++++++ sl  sf  + +dq ++++ +   +
  CCD23816.1  11 TKKESSNIDSLNSSFESVNMDQSSTNSDKPDLP 43 
                 345666677777777777777776665553332 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 6e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplrnlalsh 32 
                 G  n  +++YlNslLQ ++ i plr+ +l  
  CCD23816.1 753 GINNIGNTCYLNSLLQYYFSISPLREYVLGY 783
                 6778889******************988765 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00025
                  x...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  254 l...................eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWylFNDf 318 
                  +                    ++l+e+ +++ ++ + + Y+L++v +h+g+++  gh+  ++k    +++    ++ W + ND 
  CCD23816.1 1175 TilkkagtdiddelstiynqITQLEETISHQFEQFKKVGYSLFAVFIHRGEAS-YGHYWVYIK---DYNQ----NGIWRKYNDE 1250
                  033333333444444555442233333333345667788***********777.*********...4544....5689999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       923  (0.0514808); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.44
# Mc/sec: 8817.06
//
Query:       CCD23817.1  [L=320]
Description: hypothetical protein NDAI_0C01560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.5e-05   22.9   0.1    0.00014   22.1   0.1    1.4  1  Retrotrans_gag  Retrotransposon gag protein
     0.0087   16.1   5.5      0.019   15.0   5.5    1.6  1  zf-CCHC         Zinc knuckle
  ------ inclusion threshold ------
        0.1   12.6   3.1       0.21   11.6   3.1    1.5  1  zf-CCHC_3       Zinc knuckle
       0.13   11.7   1.3       0.24   10.9   1.3    1.4  1  P53_TAD         P53 transactivation motif


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1     3e-08   0.00014       2      78 ..      82     157 ..      81     172 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3e-08
  Retrotrans_gag   2 lastslegaAkswlkslvarsidasesWkdlkkaflktflpserkdqleeelsslrQgtesvreYvtrfktladqld 78 
                     + +++l+++A+ w+++ +++++  + s++++ + f ++f ++ +  ++ +el++l       +e +++fk+l++ l+
      CCD23817.1  82 FLVECLTDQALIWFDQAEKDQDLYALSYEEFVRIFTDHFTKEVDAFETFSELWNLGH-CANATEHAQKFKSLVSGLK 157
                     56899***************99999****************999999**********.8899999*******99887 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   5.5   4.3e-06     0.019       3      18 .]     299     314 ..     297     314 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.3e-06
                 TSSSSSSSSTTTTSTS CS
     zf-CCHC   3 CynCGepGHiardCpk 18 
                 C+nC e GH++++C+k
  CCD23817.1 299 CRNCHEYGHYKKQCKK 314
                 **************96 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.1   4.6e-05      0.21       3      25 ..     295     317 ..     294     320 .] 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
   zf-CCHC_3   3 asaaCQkClkkGHwtYECknage 25 
                 ++ +C +C ++GH+  +Ck+ + 
  CCD23817.1 295 ENDLCRNCHEYGHYKKQCKKPNA 317
                 5789***************7554 PP

>> P53_TAD  P53 transactivation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.3   5.3e-05      0.24      12      20 ..     128     136 ..     128     136 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.3e-05
     P53_TAD  12 ETFsdLWkl 20 
                 ETFs+LW+l
  CCD23817.1 128 ETFSELWNL 136
                 9*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2341.81
//
Query:       CCD23818.1  [L=1247]
Description: hypothetical protein NDAI_0C01570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-31  107.9   0.1      9e-31  107.1   0.1    1.4  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    2.1e-28   98.3   0.0    5.9e-28   96.9   0.0    1.8  1  RT_RNaseH_2      RNase H-like domain found in reverse transcr
    4.5e-28   97.6   0.0    9.9e-28   96.5   0.0    1.6  1  RT_RNaseH        RNase H-like domain found in reverse transcr
    1.6e-17   63.3   2.4    1.6e-17   63.3   2.4    2.2  2  Integrase_H2C2   Integrase zinc binding domain
    2.2e-17   63.2   0.1    4.9e-17   62.0   0.1    1.5  1  Peptidase_A2B    Ty3 transposon peptidase
    1.2e-14   54.5   0.1    3.6e-14   53.0   0.0    1.8  2  rve              Integrase core domain
    3.8e-05   24.2   0.0    7.8e-05   23.3   0.0    1.5  1  Asp_protease_2   Aspartyl protease
    0.00021   21.4   1.1     0.0013   18.9   0.1    2.8  2  zf-H2C2          H2C2 zinc finger
  ------ inclusion threshold ------
      0.015   15.1   0.1      0.031   14.0   0.1    1.4  1  RVP_2            Retroviral aspartyl protease
      0.018   15.6   0.0      0.037   14.6   0.0    1.6  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.1     5e-34     9e-31       2     222 .]     344     501 ..     343     501 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 5e-34
                 E-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   2 pKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                  K++ gsyR+ +     dy+ lnk+++k         ++ ++p+ ++              l k ++a ++++lDl ++++++p++  +  +taf +p 
  CCD23818.1 344 TKHD-GSYRLcV-----DYRELNKVTVK---------DPFPLPHVDEL-------------LGKVGSASVFTTLDLHSGYHQIPMNPTDMDKTAFVTP- 413
                 6999.*****55.....***********.........***********.............8899*********************************. PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglki 198
                                         +g+ye++++p+G+v++P++f ++m +l+r+l+      ++ +Y DDili+s++ e++ +++++v ++l + +l  
  CCD23818.1 414 ------------------------TGKYEYTVMPFGLVNAPSTFARYMADLFRDLE------FVNVYLDDILIFSNDLESHWKHIDVVLSRLDQEKLIA 482
                 ........................9*******************************......79*********************************** PP

                 EGGG-EEE.....ESSEEETTEEE CS
       RVT_1 199 npeKtklvlftvkseevkyLGvtl 222
                 +++K++++     ++ev++LG+++
  CCD23818.1 483 KKKKCHFA-----QSEVQFLGYII 501
                 ********.....9*******986 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   0.0   3.3e-31   5.9e-28       1      99 [.     562     660 ..     562     661 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.9 bits;  conditional E-value: 3.3e-31
  RT_RNaseH_2   1 WteeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrhyllgrkf 98 
                  W++ q++af +lk+ l+s+p+L +++ d+++ l+tDaS  g+gavL    d++ + +++++S++l++++r+y+  e+el+Ai+++l++f+++l+g++f
   CCD23818.1 562 WGDLQDDAFATLKRDLMSEPLLVPFKRDAEYRLTTDASMDGLGAVLEEVADNKVLGVVSYYSKSLNETQRRYPPGELELMAIIEGLEHFKYMLHGKHF 659
                  99*************************************************988*******************************************9 PP

  RT_RNaseH_2  99 t 99 
                  +
   CCD23818.1 660 V 660
                  7 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   5.5e-31   9.9e-28       3     105 .]     589     691 ..     587     691 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 5.5e-31
                 TS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS--EEEE-SS--TTTTT----.---HHHHHHH CS
   RT_RNaseH   3 skpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqgrkftvitDhknlkyllskkslngrlarWale 101
                 + ++ l+tDAs dg+gavL    +++   +++++S++l++++r+y+  e+el+Ai++ l++f+++l+g++f ++tDh +l +++++k+ ++r++rW+ +
  CCD23818.1 589 DAEYRLTTDASMDGLGAVLEEVADNKVLGVVSYYSKSLNETQRRYPPGELELMAIIEGLEHFKYMLHGKHFVLRTDHISLLSIQNQKEPARRVQRWLDT 687
                 57899****************999999*************************************************************99********* PP

                 C-XX CS
   RT_RNaseH 102 Lsey 105
                 Lse+
  CCD23818.1 688 LSEF 691
                 **98 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.4   2.5e+03      35      50 ..     531     546 ..     521     547 .. 0.80
   2 !   63.3   2.4   9.2e-21   1.6e-17       1      57 [.     812     871 ..     812     872 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.4
  Integrase_H2C2  35 WpgmrkdvkkyvksCe 50 
                     + gm +  +k++k C 
      CCD23818.1 531 FVGMINYYRKFIKDCS 546
                     56999999*******6 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 9.2e-21
  Integrase_H2C2   1 vpkslrkeilkeaHds...agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     vp+  r+ +++ +Hd+   +gH+G + t++++++ y+Wp+ +k+v++yvksC +Cq  k+
      CCD23818.1 812 VPHIRRPLVMETYHDHkwfGGHFGEHDTFKKISEIYFWPNCYKTVQDYVKSCIQCQVMKA 871
                     79999***************************************************9997 PP

>> Peptidase_A2B  Ty3 transposon peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.1   2.7e-20   4.9e-17      34     137 ..      87     190 ..      62     214 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 2.7e-20
  Peptidase_A2B  34 taektikikntkvktlfdsgsptsfirrdivellkleiyetpplrfrgfvatksavtseavtldlkvddlqitlaayvldkmdyqllignpilrry 129
                     +  +i  k   + +l+d+gspt fir d+v  l+l++ + p  r +g+v+   ++   a  ld+++++ + +++ayv d +  ++lig p ++r+
     CCD23818.1  87 VCIVNIGTKSRTLEALIDTGSPTHFIRSDVVTKLDLKTSQVPFRRVKGLVSDAITTCNTACRLDFRLENREFDICAYVTDIIKNDVLIGYPFVKRH 182
                    555567778888999********************************************************************************* PP

  Peptidase_A2B 130 pkllytvl 137
                    p l+ ++ 
     CCD23818.1 183 PSLMESIH 190
                    ***99885 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       9.9   1.8e+04      21      36 ..     380     395 ..     370     396 .. 0.74
   2 !   53.0   0.0     2e-17   3.6e-14       9     117 ..     894    1001 ..     890    1003 .. 0.93

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 9.9
         rve  21 ggkayllvvvddfsrl 36 
                  g a +++ +d +s++
  CCD23818.1 380 VGSASVFTTLDLHSGY 395
                 446899*******976 PP

  == domain 2  score: 53.0 bits;  conditional E-value: 2e-17
         rve    9 qvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqd 104 
                  ++D+   ++  +  g+  + vv+d f+++++ +a+++ + ++ v+++l r+v +++g  p++++sD+   +ts+a+re+  +lgi++ ++   +pq+
  CCD23818.1  894 SMDFLtGIP-TTLAGWDMIMVVIDRFTKRAHFVACKKVNGSTGVFDALFRFVFSLHGF-PRTIVSDRDIRFTSNAYRELTDRLGIKLLMSTSNHPQT 988 
                  788884444.667779**********************9999***************8.************************************** PP

         rve  105 nGkvErfhrtlkd 117 
                   G  Er +rtl +
  CCD23818.1  989 DGQTERVNRTLNQ 1001
                  **********987 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   4.3e-08   7.8e-05       8      90 .]      97     178 ..      88     178 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.3e-08
  Asp_protease_2   8 kpvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrld.slklggltlknvpalvldlgeeidglLGmdf 90 
                     +++++l+DTG+ t +i++++++kl lk+++ +++++  +++ + ++    ++ +++l + ++ ++ a+v+d   + d+l+G++f
      CCD23818.1  97 RTLEALIDTGSPTHFIRSDVVTKLDLKTSQVPFRRVKGLVSDAITTCNTACRlDFRLENREF-DICAYVTD-IIKNDVLIGYPF 178
                     699**************************988766666666666665555555688888666.67778888.678999999987 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.76   1.4e+03      21      36 ..     129     144 ..     116     148 .. 0.80
   2 !   18.9   0.1   7.5e-07    0.0013       4      39 .]     832     867 ..     827     867 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.76
     zf-H2C2  21 wlgiketvseVissCk 36 
                 + + k +vs+ i++C 
  CCD23818.1 129 FRRVKGLVSDAITTCN 144
                 568899*********5 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 7.5e-07
     zf-H2C2   4 tHlGinkltallarkYhwlgiketvseVissCkaCq 39 
                  H+G+  + +++ + Y w++ ++tv++ ++sC +Cq
  CCD23818.1 832 GHFGEHDTFKKISEIYFWPNCYKTVQDYVKSCIQCQ 867
                 5**********************************9 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.7e-05     0.031      19     128 ..      85     193 ..      75     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.7e-05
       RVP_2  19 pdvvlgtflvnsipatvLfdsGasHsFiskafvsklklkveaLstpllietPvgssvtakeicksveieiqgiefladlilLdlkdlDviLgmdWLskn 117
                 +dv + ++  +s  +  L+d+G    Fi   +v+kl lk++++ ++  ++  v++ +t+ + +  +  +++++ef +   + d+ + Dv++g  ++ ++
  CCD23818.1  85 EDVCIVNIGTKSRTLEALIDTGSPTHFIRSDVVTKLDLKTSQVPFR-RVKGLVSDAITTCNTACRLDFRLENREFDICAYVTDIIKNDVLIGYPFVKRH 182
                 67777777778999999******999*****************998.68899999999888888899*********999999********999988888 PP

       RVP_2 118 kanidcaekkv 128
                  + ++  +k++
  CCD23818.1 183 PSLMESIHKNI 193
                 87777766665 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.1e-05     0.037       7      92 .]      96     181 ..      90     181 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
                      TEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEE.EEEE.EETTEEEEEEEEEESSSSEEEEHHHHHH CS
  gag-asp_proteas   7 gkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrld.svkiggielrnvsavvlegelddlLLGldfLkr 92 
                       +++++l+DTG  + +i ++++++l l++++ ++++  + ++  ++++ + ++   ++++ e+  + a+v++  ++d+L+G  f kr
       CCD23818.1  96 SRTLEALIDTGSPTHFIRSDVVTKLDLKTSQVPFRRVKGLVSDAITTCNTACRlDFRLENREFD-ICAYVTDIIKNDVLIGYPFVKR 181
                      5789**************************9875444444444445555555545666777664.6677777667888998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.42
# Mc/sec: 8901.53
//
Query:       CCD23819.1  [L=126]
Description: hypothetical protein NDAI_0C01580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-48  162.0   0.1    8.3e-48  161.9   0.1    1.0  1  Profilin  Profilin
  ------ inclusion threshold ------
      0.084   12.8   0.0        0.1   12.5   0.0    1.2  1  NTNH_C    Nontoxic nonhaemagglutinin C-terminal


Domain annotation for each model (and alignments):
>> Profilin  Profilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   0.1   9.2e-52   8.3e-48       1     127 []       1     126 []       1     126 [] 0.99

  Alignments for each domain:
  == domain 1  score: 161.9 bits;  conditional E-value: 9.2e-52
                 HHHHHHHHCCCHHCSSESEEEEEETTSSSEEEEETTGG--HHHHHHHHHHHHSTCHHHHH-EEETTEEEEEEEEETTEEEEEETTEEEEEEE-SSEEEE CS
    Profilin   1 msWqayvdesllgtgkvdkAaIigadggsvwaasegfkvtpeevkaivkafkdpsklqsnGvtiggekYlviraddesiygkkgkegvvivktkqalvi 99 
                 msWqay d +ll+tgkvdkA+I++ +g+svwa+s+gf+++++e+++i + f++p++lqsnG++i+g+k++ +radd+siyg++++egvv+v+tkq++++
  CCD23819.1   1 MSWQAYTD-NLLATGKVDKAVIYSRAGDSVWATSGGFQLQANEISEICQGFDNPAGLQSNGLHIQGQKFMLLRADDRSIYGRHDAEGVVCVRTKQTVLV 98 
                 9*******.****************************************************************************************** PP

                 EEE-TTS-HHHHHHHHHHHHHHHHHCT- CS
    Profilin 100 avydegvqpgnankavekladyLisagy 127
                 a+y+ +vq+g+a+k ve+ladyLis +y
  CCD23819.1  99 AHYPPTVQAGEATKIVEQLADYLISVQY 126
                 *************************987 PP

>> NTNH_C  Nontoxic nonhaemagglutinin C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.2e-05       0.1      52      88 ..      57      93 ..      36     101 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
      NTNH_C 52 dtndlnlqaakfkllsidtnkqyvqkldevvvslldd 88
                ++n l +q+ kf ll  d    y ++  e+vv++  +
  CCD23819.1 57 QSNGLHIQGQKFMLLRADDRSIYGRHDAEGVVCVRTK 93
                5799*****************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 941.61
//
Query:       CCD23820.1  [L=470]
Description: hypothetical protein NDAI_0C01590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-48  164.6   0.1    1.7e-48  164.6   0.1    3.1  3  Leo1        Leo1-like protein
  ------ inclusion threshold ------
        5.3    7.2   5.8         17    5.6   1.1    2.5  2  MDH         Methanol dehydrogenase beta subunit
        8.3    5.6  54.1       0.44    9.8  20.7    2.4  2  BUD22       BUD22


Domain annotation for each model (and alignments):
>> Leo1  Leo1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.3   7.0         3   1.8e+04     149     149 ..      97      97 ..      49     164 .. 0.62
   2 !  164.6   0.1   2.9e-52   1.7e-48       1     165 []     169     335 ..     169     335 .. 0.95
   3 ?   -0.8   3.8       0.2   1.2e+03      23      40 ..     400     429 ..     383     449 .. 0.49

  Alignments for each domain:
  == domain 1  score: -8.3 bits;  conditional E-value: 3
        Leo1 149 k 149
                 +
  CCD23820.1  97 E 97 
                 1 PP

  == domain 2  score: 164.6 bits;  conditional E-value: 2.9e-52
        Leo1   1 ylvklPnflsiepkpfdpetfeeeadeeaeeae.eserarkklkaentiRwRykedk.gteikeSNArivrWsDGSlsLqlGsevfdvtrkaladsnty 97 
                 y++k+P fl+i+p pfdp +fe +++++  + + ++++   +l +entiRwRy++d+ ++ +keSNA+iv+WsDGS+sL+lG+e+ d+  +++  +nt+
  CCD23820.1 169 YYAKVPPFLTIDPIPFDPVSFETKVKDRLADYSsREDQLGDRLIDENTIRWRYSRDQnQRVFKESNAQIVQWSDGSFSLKLGDEYTDILVNDT--DNTF 265
                 689********************999887654468899999***************6699*********************************..**** PP

        Leo1  98 Lvvsheaeevleaq..gvitekltfrPasleseahrrltravakrhkkkakktklivteeDpekekeeae 165
                 L+vsh+++e++++   g+it++++f P+s++s+ h++l++av +r+++++    +++ e+Dpe+ek+e e
  CCD23820.1 266 LTVSHDQQELMQCYngGEITKTMMFIPTSTNSKIHQQLSKAVTRRNQRQNLGPGTMIIEKDPELEKKELE 335
                 *************9889**************************************************976 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.2
        Leo1  23 e............eadeeaeeaeeserark 40 
                 e            e++ee+ee++e++r++k
  CCD23820.1 400 EeeefvgdedeeeEEEEEEEEEDEDDRKAK 429
                 044444433322112222222223333333 PP

>> MDH  Methanol dehydrogenase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.014        86      49      88 ..     326     365 ..     322     367 .. 0.70
   2 ?    5.6   1.1    0.0028        17      53      86 ..     409     442 ..     402     446 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.014
                 -----HHHHTHHHHHHHHHHHHHHHHHHHHHHHSS----G CS
         MDH  49 dPkhdpkelnkqeesikameernkkrvenfkktGkfeydv 88 
                 dP+ ++kel+k++  i     + + + ++++++   ++dv
  CCD23820.1 326 DPELEKKELEKKQGQILRERRKRQLKEREIQESPDTTFDV 365
                 9*********998877655555555555666666666665 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0028
                 -HHHHTHHHHHHHHHHHHHHHHHHHHHHHSS--- CS
         MDH  53 dpkelnkqeesikameernkkrvenfkktGkfey 86 
                 d++e + +ee  ++ ++r +kr++++kk G  ey
  CCD23820.1 409 DEEEEEEEEEEEEDEDDRKAKRLKEIKKGGAQEY 442
                 6667777788888999**************9998 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  20.7   7.4e-05      0.44     141     232 ..      45     145 ..      12     210 .. 0.58
   2 ?    1.6  25.4     0.024   1.4e+02     165     254 ..     354     443 ..     288     470 .] 0.29

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.4e-05
       BUD22 141 kkkkeeekkkkkkkkkkkkkkeeeeeeesdkeeesedsed..eekeeseddeeeeeededdedaee.deedeeaeerelaqydglla....sddeded. 231
                 +k  e++++k+++k+ +++++eeeeee++++++   d+ed  +e++ s+d+ee    +edde+a++  e+++++e   ++++ g  +    sd+e++  
  CCD23820.1  45 EKVGEPDEEKEAEKEGEEGEEEEEEEEQEGMDDLFGDDEDedKEQRGSDDEEEGFIVEEDDESAQRrPEDMDDEEAMYTRKFYG--DtdkySDNEEDAh 141
                 333344444444444444444444445555555544444454555666666666666666666655533333333333333333..1223333333332 PP

       BUD22 232 ...e 232
                    e
  CCD23820.1 142 dfkE 145
                 3330 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.024
       BUD22 165 e.......................eeesdkeeesedsedeekeeseddeeeeeededdedaeedeedeeaeerelaqydgllasddeded...eyneet 237
                 e                                                               ++ ++++++e+++ d l+++d+e+e    e +ee+
  CCD23820.1 354 EiqespdttfdvrgsassknrspaP---------------------------------------SSYRGSRQDEYEEDDFLVDDDEEEEFvgdE-DEEE 412
                 1222222222222222222222220.......................................222222222222222222222222222211.1111 PP

       BUD22 238 deesseesdssdsses..............a 254
                 +ee++ee++++d++++              a
  CCD23820.1 413 EEEEEEEEEDEDDRKAkrlkeikkggaqeyA 443
                 1111111111111111111112222211111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1703  (0.0949858); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        60  (0.00334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.09u 0.35s 00:00:01.44 Elapsed: 00:00:00.50
# Mc/sec: 2801.02
//
Query:       CCD23821.1  [L=313]
Description: hypothetical protein NDAI_0C01600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-50  171.6   0.0    1.9e-48  165.2   0.0    2.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.2   0.0     1e-52   1.9e-48       2     292 ..      23     292 ..      22     294 .. 0.96

  Alignments for each domain:
  == domain 1  score: 165.2 bits;  conditional E-value: 1e-52
                   EEEE-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHHT CS
  Aldo_ket_red   2 lglGtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKvdlrdaeiksglskeniresleeslkrLg 98 
                   +glGtwq ++     ++e +e++  al+aG++++DtA +Y   ++e+ +G+a+++s+ +ree++++tK+        +g ++ + +++l++sl+rLg
    CCD23821.1  23 VGLGTWQSTN-----ENEGYEAVMNALKAGYRHIDTAAIY---KNEDQVGKAINDSGIPREEIFVTTKL--------WGTQHRDPETALNQSLERLG 103
                   799***8775.....7************************...**************************........899999999*********** PP

                   -S-EEEEEE-S--TTS-...........................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH..HHTTT--EEEEE-B-BTT CS
  Aldo_ket_red  99 tdyvDllllHrpdpslp..........................sieevldaleelvkeGkiraiGvSnfsveqleka..kkkkkvkivavqveynll 167
                   +dyvDl+l+H+p    p                          +  ++++ ++el k Gk ra+GvSnfs+  l+++  +  +k+ ++a+qve ++l
    CCD23821.1 104 LDYVDLYLMHWPVAFKPdsikdgnystmpmlpngqrdldlttwNFVKTWELMQELPKTGKTRAVGVSNFSINNLKALlsSPGNKLVPAANQVEAHPL 200
                   *****************************************************************************988999999*********** PP

                   -HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE-- CS
  Aldo_ket_red 168 releeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivipga 264
                     l + +l ++ck+kg+ l aysplg+                                ++ +++ e+ak+h+v++aq+++++ +  +++ +v+p++
    CCD23821.1 201 --LPQDELQKFCKEKGIILEAYSPLGSTNAP---------------------------ILTEPKIIEIAKKHNVQPAQVVISWHV--QKGHVVLPKS 266
                   ..************************54333...........................377899*********************..9********* PP

                   SSHHHHHHHHGGGG----HHHHHHHHHH CS
  Aldo_ket_red 265 snieqlednldalelklseeevaeldel 292
                      e++++n++ +  +ls++e++ l++l
    CCD23821.1 267 VHEERIKANFQTF--ELSKDEMDSLNNL 292
                   *************..********99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2548.50
//
Query:       CCD23822.1  [L=584]
Description: hypothetical protein NDAI_0C01610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-26   91.9   0.7    4.5e-25   88.5   0.7    2.4  1  TLD         TLD
  ------ inclusion threshold ------
      0.045   12.7   0.1      0.076   11.9   0.1    1.2  1  PALB2_WD40  Partner and localizer of BRCA2 WD40 domain


Domain annotation for each model (and alignments):
>> TLD  TLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.7     5e-29   4.5e-25       6     139 .]     370     532 ..     331     532 .. 0.90

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 5e-29
         TLD   6 skdgsslstllekie....nkgptlllikdekkyifGaflsqpwkssnkkfygdsesflfslspkfkvyks.tgknkaylntssdglgfGggqp..... 94 
                 + ++ +++++l++++    n++++  + + +kk  f++++++pw+ +nk+f+gd +s +++lsp+++++ks ++ + +y+nt + g+g+G +qp     
  CCD23822.1 370 EYNNPRFKRFLQEFPklndNEQSLEPCHSYKKKISFAVYIDEPWRVTNKEFFGDLNSRIIELSPRQDIFKSlKSHELIYFNTIGCGIGIGDKQPhvsng 468
                 5678899999999998864334444444667779*************************************878889********************** PP

         TLD  95 .........kfsLwidsslekgtsrhs...etfengllsg.......aseerfkikdiEVWglg 139
                          ++sL+++s+le++++rh    ++f+++ l         ++e +f i+d+EVWg+g
  CCD23822.1 469 ansrkyqpgNVSLTLESTLEFAVFRHVghgGAFSPSELLTkrgteeeSFEIKFIIQDVEVWGCG 532
                 **************************999*****9977777*****999*************96 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   8.5e-06     0.076     204     250 ..     101     149 ..      96     173 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.5e-06
  PALB2_WD40 204 iWnlktGqllkkiei..gesyqasvclkaysdsGllfvvlshphakese 250
                 iW++ +G ll  i +  ++ +q  +  k+y +  llf++l+   +++s 
  CCD23822.1 101 IWDITAGNLLTCIILldNDRCQRFIGSKSYDQIKLLFILLCLSTNNSSG 149
                 9**********987644568*********************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       563  (0.0314016); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4702.90
//
Query:       CCD23823.1  [L=1460]
Description: hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-83  278.1   0.1      1e-82  277.6   0.1    1.2  1  RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
    3.2e-81  273.1   0.0    8.6e-81  271.7   0.0    1.7  2  RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
    2.4e-76  255.6   0.0      5e-76  254.5   0.0    1.6  1  RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
    2.2e-39  134.9   0.0    5.4e-39  133.6   0.0    1.7  1  RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
    6.9e-31  106.4   0.1    1.8e-30  105.0   0.1    1.8  1  RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.6   0.1   2.8e-86     1e-82       1     265 [.     855    1382 ..     855    1384 .. 0.98

  Alignments for each domain:
  == domain 1  score: 277.6 bits;  conditional E-value: 2.8e-86
                      B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEEEETTS-EEESSGGGTS........................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
  RNA_pol_Rpb1_5    1 GLkvkefffhtmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtvrnsggeivqflygedg........................... 66  
                      GL++ ef fh+  gReGL+DtAvkTae+GY++Rrl+k+led+  +yd+tvr s++ ivqf+yg+dg                           
      CCD23823.1  855 GLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNGIVQFTYGGDGldpmemegnakpvnfnrswdhatnitf 947 
                      9******************************************************************************************** PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5   67 ............................................................................................. 66  
                                                                                                                   
      CCD23823.1  948 spdqhgllpyqimettnailkpledrlirydnlgeivpnedstkaeyvdqfdaerdfykslrdymdekakvlgsvrksrgmlpmvdepaeelk 1040
                      ********************************************************************************************* PP

                      .........................................B--TT-BHHHHHHHHHHHHHHCCCSSTTSSTCSSTSSSSSSHHHHHHHHTT- CS
                      .........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5   67 .........................................lvepGeavGiiaaQSiGePgTQltlnTFHfaGvasknvtlGvprlkeilnvs 118 
                                                                vepG+avG+i aQSiGePgTQ+tl+TFHfaGvas+nvtlGvpr+kei+n+s
      CCD23823.1 1041 kmnpdeqvpetirysvdqlykitedlvkkfleialykyrkaRVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAS 1133
                      ********************************************************************************************* PP

                      SS-SS-EEEEEB-SSSSSCHHHCHHHHHHHSE............................................................. CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................. RF
  RNA_pol_Rpb1_5  119 kniksksltvllvdeeakelekakkvkkaiek............................................................. 150 
                      k+i+++ +++ lv+e+  + + a+ vk++iek                                                             
      CCD23823.1 1134 KVISTPIINAVLVNEN--DERAARVVKGRIEKtllsdvayyiqdvykdnlsfiqvridlntieklqleltiediavaltrapklkiltsdvni 1224
                      ***************9..6666789999999999*********************************************************** PP

                      .................................................CBTTEEEEEEEEEEEEEEETEEEEEEECS--HHHHTTSTTTBET CS
                      .................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  151 .................................................gikkikrilvkeaekgkeeekelvletegvnlsevlkveevvda 194 
                                                                       g+++i r++++  ++gk+e     l +eg  l++v+ +++ v  
      CCD23823.1 1225 igkdkiainvfpegykaksistaakeptenavfyrmqhlrralpsivvkGLPEIARAVINIRDDGKRE-----LLVEGYGLRDVMCTDG-VIG 1311
                      ************************************************************99999988.....689*************.888 PP

                      TTEEESSHHHHHHHHCHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHHHHTTTSS---SSTTCHCCSSSH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  195 geilsndiaeileilgieaarkallkeiqevykvqgvsvndrHlelivdqmtkkgeivavnrsGinkaels 265 
                       ++++n+i e+ ++lgieaar+ ++ ei+ +++++g+sv+ rH++l+ d+mt kge++ ++r G+ k+  s
      CCD23823.1 1312 MKTTTNHILEVNTVLGIEAARSSIVGEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDS 1382
                      899**************************************************************998765 PP

>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.7   0.0   2.4e-84   8.6e-81       2     312 .]      11     368 ..      10     368 .. 0.87
   2 ?   -2.4   0.0      0.66   2.4e+03      33      69 ..     874     910 ..     865     916 .. 0.80

  Alignments for each domain:
  == domain 1  score: 271.7 bits;  conditional E-value: 2.4e-84
                     E---EEEEEE--HHHHHHH-SBB--STTSTC.STSSSSBBSSSSSSSSS-SSSSSTSTTTSSTTTT-----EEEEEECEEE-HHHHHHHHHHCTT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1   2 kkikeiqfgiaspeeirkwSvvevtkaetie.ekslkPeegGllDerlgtidkdleCetCgkkkkeCeghfGhieLakPvfhigffklilkilec 95 
                     k+i+ ++f+ +s  +i + S+ve++++++++ ek ++P++gG lD+r+g+++++leCetC+ + ++C+ghfGhi+La Pvfh+g+fk++++il+ 
      CCD23823.1  11 KRISGLEFSALSAADIVAQSEVEISSRDLFDlEKGREPKTGGALDKRMGVSSSSLECETCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQG 105
                     89*****************************98999*********************************************************** PP

                     CETTTTEBSS-TTSH....HHHHHHCSSSCC..CCHHHHHHHHCCS-BE-SSSSB-EEE..............................EEETTE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxx RF
  RNA_pol_Rpb1_1  96 vckecskllldeekkkllsklkkrekleelk..krlkaieelckkinlcekCgavqpkl..............................eeegek 158
                     +ck+cs++ll++++++++ ++ +r+ +++l+    lk++ + ckk + c +Cga ++ +                              +     
      CCD23823.1 106 ICKTCSAILLSDKDRRQFLNELRRPGVDNLRrmGILKKVLDQCKKQRRCLQCGALNGVVkkaaagagsaslkiihdnfrwvgkksapekD----- 195
                     ******************************966689******************777765555666655555565555555555544332..... PP

                     EEEEESSSST....................SCEEEE-HHHHHHHHHCSTHHHHHHTTSBT..TTB-GGGCCECCEEE--GGGS-BEESSSS.SEE CS
                     xxxxxxxxxx....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  RNA_pol_Rpb1_1 159 lkaalkkske....................eekeklsaekvkkllkriededvevlgfks..sgsrPewliltvlPVpPpeiRPsvqldgg.rrs 230
                              +                    + +++l++ k+++l+k+i+ ed+e+lg++s  ++ rPe  i+++lP pP++iRPsv+++ + + +
      CCD23823.1 196 ---------KwvgdwkevlshhpelerfvkRCSDDLNPLKTLNLFKQIKPEDCELLGVNStvKSGRPETYIWRYLPAPPVCIRPSVMMQDSpASN 281
                     .........0444444444455558888867779*************************966789**********************9988799* PP

                     BECCCCHHHHHHHHHHHHHHHHHSSSSSTCHHHHHHHHHHHHHHCC-TTSSSSSE.....EBSTTSSS--THHHHHTSSSSCCCCCT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 231 edDlteklrdiikrNnrLkkaeeegapeliieeekelLQehvatlfdneisglkp.....atqkskrplkslsqrLkGKeGrfRgnL 312
                     edDlt kl++i+++ + +k  +e+g   + ++e+++ LQ+ va+++++++ +        +   + +p+++++qrLkGK+GrfRgnL
      CCD23823.1 282 EDDLTVKLTEIVWTSSLIKAGLEKGISINNMMEHWDYLQLTVAMYINSDSVNPAMlpgasSGGGKVKPIRGFCQRLKGKQGRFRGNL 368
                     *************************************************987544222212334569*******************9 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.66
                     STSSSSBBSSSSSSSSS-SSSSSTSTTTSSTTTT--- CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1  33 ekslkPeegGllDerlgtidkdleCetCgkkkkeCeg 69 
                     ++  k +e G +  rl  + +dl+C++ +  +++++g
      CCD23823.1 874 DTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSSNG 910
                     556788999*****************99988887776 PP

>> RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.5   0.0   1.4e-79     5e-76       1     166 []     370     537 ..     370     537 .. 0.99

  Alignments for each domain:
  == domain 1  score: 254.5 bits;  conditional E-value: 1.4e-79
                     SEEESSEEEEEEEEESSS-TTEEEEEHHHHTTSEEEEE-STTTHHHHHHHHHHTTTSSSSEEEE.ESTTSSEEETTTT-S.CHHCCTTTTSEEEE CS
  RNA_pol_Rpb1_2   1 GkrvdysaRsvispdpnlkldevgvPisvakkltvpeivtelnikklrklvengpevyPgasyv.kredgsekklkakkr.klakelekgdiver 93 
                     Gkrvd+s+R+vispdpnl++dev+vP +vak+lt+pe+vt++n++kl++l++ngp+v+Pga+y+ k++++++++l++ +r klak+l+ gd+ver
      CCD23823.1 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNRQKLQQLIINGPNVHPGANYLlKNNEDARRNLRYGDRvKLAKNLQFGDVVER 464
                     9**************************************************************999999**********999************* PP

                     E--TTSEEEEE-SSTTSGGGEEEEEEEEESSSSEEEEGGGHCCCT--SSS-EEEEE--SSHHHHHHHHHCSBT CS
  RNA_pol_Rpb1_2  94 hvkdgdvvllNRqPsLhklsimahrvkvlekktlrlnlsvttayNaDFDGDemnlhlpqseearaEaeelllv 166
                     h++dgdvvl+NRqPsLh+lsi +h++k+ +++t+rln++v+t+yNaDFDGDemnlh+pq+eearaEa +l+ v
      CCD23823.1 465 HLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGV 537
                     **********************************************************************975 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.0   1.5e-42   5.4e-39       1     157 []     540     717 ..     540     717 .. 0.92

  Alignments for each domain:
  == domain 1  score: 133.6 bits;  conditional E-value: 1.5e-42
                     CSEETTTTEESSS--THHHHHHHHHSSTTEEEEHHHHHHHHHHSSSCCSSSSSSSSSBESSSEBEEHHHHHHCCCHC......CCCEEEESSSS. CS
  RNA_pol_Rpb1_3   1 nilspqsgkPvigivQDsllGvyllTkedvfidreeaqqllykgvgsdsktvtlrpailkpkelwtgkqtfsrilpn......einyerkneek. 88 
                     n+l+p+sg+P+i+ +QD+++G+yl++++d f+dr++  qll+ +++ + + + ++pai+kp+ lwtgkq+fs+++ +       in++ kn+   
      CCD23823.1 540 NLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLTQLLSMMCDANLQFDIPPPAIMKPHYLWTGKQLFSLLIKPnkdspvVINLDAKNKVYi 634
                     89******************************************9999999**********99************999***99555555422224 PP

                     ..............STSEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEB-TGGGG CS
  RNA_pol_Rpb1_3  89 ..............dgkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigDt 157
                                   dg+v+i+ +++++Gv+dk+v+g+ ++ s+++++ ++yg++e+++ ++++ +l+ ++l ++gf+igi+D+
      CCD23823.1 635 ppktkaypnemsrnDGYVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAATAMNRMAKLCARFLGNRGFSIGISDV 717
                     45556677788999********************************************************************6 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.1   5.2e-34   1.8e-30       3     108 .]     744     848 ..     742     848 .. 0.96

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 5.2e-34
                     HHCTHTCCHHHTTHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSHHHHHHHCTSSS-HHHHHHHHTB-EEEEBTTBSS--SSTSCSSTTSSS CS
  RNA_pol_Rpb1_4   3 eaerygkledlpgksleelfeakinkilnkardkagkiaskslaasNsiliMvksGaKGsiinisqiagclGqqnvegkripkgfsgrtlphfkk 97 
                     ++++ gkle +pg + e+++eaki  +l+k+r+++g+++ ++l++ N  liM+ +G+KGs++n+sq+++++Gqq ++g+r+p+gf++r+lphf+k
      CCD23823.1 744 QFNK-GKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQK 837
                     5566.9**************************************66************************************************* PP

                     SESSTTTSSEE CS
  RNA_pol_Rpb1_4  98 idespesrGFv 108
                     ++++p+s+GFv
      CCD23823.1 838 NSKTPQSKGFV 848
                     **********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 10092.21
//
Query:       CCD23824.1  [L=500]
Description: hypothetical protein NDAI_0C01630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     2e-178  593.7   0.1   2.3e-178  593.4   0.1    1.0  1  Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
    5.1e-09   35.6   0.0    5.3e-05   22.4   0.0    2.2  2  Peptidase_M42  M42 glutamyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M18  Aminopeptidase I zinc metalloprotease (M18)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  593.4   0.1  2.6e-182  2.3e-178       1     432 []      25     488 ..      25     488 .. 0.94

  Alignments for each domain:
  == domain 1  score: 593.4 bits;  conditional E-value: 2.6e-182
                    HHHH--SHHHHHHHHHHHHHCTT-EESTTTS-ST..STTCEEEEEEETTTEEEEEEEETTS-GGG--EEEEEE---SEEEEECCEEEEETTEEEEE CS
  Peptidase_M18   1 finksptpyhvvaevaekllkagfkelsekekwk..iepggkyfvtrngssliAFavgkkykaengfsiigaHtDsptlrvKpkskkkaegylqvg 94 
                    f+n+s++pyh+v++++ +++++gfkel e+e+w+  + ++gkyfvtrn+ss+iAF vg+k+ ++n+++i+gaHtDsptlr+Kp+sk+++e+ylq+g
     CCD23824.1  25 FLNESHSPYHAVDNIKTHFKNNGFKELIERESWDdkVLKRGKYFVTRNNSSIIAFVVGGKWAPGNPIAITGAHTDSPTLRIKPISKRTNEKYLQIG 120
                    99********************************887899******************************************************** PP

                    EEEESS.SSGGGTT--EEEEEEEEECTT--EEEEEECCSTT---BBB----GGG-GG..GSS--TTTTTSEEEEEEEE..------TTCCC..... CS
  Peptidase_M18  95 vetYGggiwetWldrdLsvaGrvlvkkkkeekleaklvnierPvlriPnlaiHLdrdineefkfneetelepilglae..eeeeekedkek..... 183
                    ve YGggiw++W+d dLs+aGrvlv +kk++k+ +kl+++++P+l+iP+laiHLdrd+n++f+fn+e +l pi gl+   e++ e++d  k     
     CCD23824.1 121 VECYGGGIWHSWFDSDLSIAGRVLVFDKKSDKVVSKLIDLNKPLLKIPTLAIHLDRDVNQKFEFNKESQLLPIAGLTIdsEKKGENND--Kedihn 214
                    ****************************************************************************774322333333..345888 PP

                    .............T....CCHHHHHHHHHHHHT.S-CCCCCCCEEEEEE-S--EEETTTT-EEEESSHHHHHHHHHHHHHHCCCCHT-TTTS-SEE CS
  Peptidase_M18 184 .............k...nkhkkalleliaeelg.vevedivdlelilvdaqkakivGiekeflfaprlDnkvscfaaleallesaedsleeedkvr 262
                                 k   ++h+++ll+liaeel+  +v+di d+el+l+d +k++++Gi++ef+f+ rlDn++scf+++ al  ++e+ +eee  +r
     CCD23824.1 215 hddklsneefssiKsiiERHHEQLLDLIAEELSlESVSDIEDFELVLYDNNKSTLGGINDEFVFSGRLDNLISCFTSMYALSLATETRIEEETGIR 310
                    889999888877625679***************7789*********************************************************** PP

                    EEEEESSCCGTS-STTSGGCTHHHHHHHHHHHHHCSTT.....-HCHHHH........HC-EEEEE--EE---TTSGGGS-TTTS--TTSEEEEEE CS
  Peptidase_M18 263 ivalfDnEEvGStsaqGadsnfleevlerisialkkse.....afeeavl........akSlliSaDvahaihPnysskheenhapllnkGvvikv 345
                    ++a fD+EE+GS+saqGadsnfl+++ler+ + + +++           l        akS+++S+Dvaha+hPny+sk+e++h+p +++G+vik+
     CCD23824.1 311 LMATFDHEEIGSSSAQGADSNFLPNILERLNFLKCDGTdssapL-----LkslilessAKSFFLSSDVAHAVHPNYASKYESQHKPYVGAGPVIKI 401
                    *******************************9988877444443.....233345899************************************** PP

                    ETTSSSTT-HHHHHHHHHHHHHHC-EEEEEEE-TTS----HCHHHHHHHHT-EEEEEE-EEBSTTSSSEEEECCHHHHHHHHHHHCC CS
  Peptidase_M18 346 nanqryatnsagaallkevaqkanvklQelvvrndspcGstigpilaaktGirtiDlGaaqlsmHSireltgskdveeavklfkaFf 432
                    nanqry+tns g++l+k++a k++v+lQ +vv+nds cGstigpila+ktGirt+D+G+++lsmHSire+ g++d+e ++klf++Ff
     CCD23824.1 402 NANQRYMTNSPGLVLIKRMADKVKVPLQLFVVANDSSCGSTIGPILASKTGIRTLDIGNPILSMHSIRETGGAADLELQIKLFREFF 488
                    **************************************************************************************9 PP

>> Peptidase_M42  M42 glutamyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   1.7e-05      0.15     123     184 ..     272     336 ..     234     349 .. 0.87
   2 !   22.4   0.0   5.9e-09   5.3e-05     185     292 .]     368     483 ..     358     483 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 1.7e-05
                    ETTECEEETTHHHHHHHHHHHHHHHHHCTSS-S..SEEEEEEES.TCTTTSHHHHHHHHHH--SE CS
  Peptidase_M42 123 langkivskalDdragvavllellkelkeeele..atvylvatv.qEEvGlrGaktsaekikpdi 184
                    ++++++ s  lD+ +++   +++l    e+++e  + + l+at  +EE+G   a+ + +++ p+i
     CCD23824.1 272 INDEFVFSGRLDNLISCFTSMYALSLATETRIEeeTGIRLMATFdHEEIGSSSAQGADSNFLPNI 336
                    67899*************************9998777778888747********99988877765 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 5.9e-09
                    EEEEEEEEE-CSTTSTTTTSS....TTS-CEEEEEETT..CCSHHHHHHHHHHHHHHTT--EEEEEE...SSSSSTHHHHHTSTTTSEEEEEEEEE CS
  Peptidase_M42 185 aiavDvtaagdtpgskekeak....lgkGpvirvkDas..giyhpklrkkllelAkknnipyqlevl...sgggtDAgaihltgegvptalisipt 271
                    ++  Dv++a + + ++++e++    +g Gpvi++  ++  ++ +p+l+  ++++A+k ++p+ql v+   s+ g+  g i  +++g++t+ i+ p+
     CCD23824.1 368 FLSSDVAHAVHPNYASKYESQhkpyVGAGPVIKINANQryMTNSPGLV-LIKRMADKVKVPLQLFVVandSSCGSTIGPILASKTGIRTLDIGNPI 462
                    5666777775555555555445678*******9986665355556665.79*************97622235678888899*************** PP

                    BSTTSTTEEEEHHHHHHHHHH CS
  Peptidase_M42 272 ryiHspvevahlddleatvkL 292
                      +Hs  e+    dle  +kL
     CCD23824.1 463 LSMHSIRETGGAADLELQIKL 483
                    *****9999999998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3779.34
//
Query:       CCD23825.1  [L=212]
Description: hypothetical protein NDAI_0C01640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-47  160.3   3.9    5.5e-47  160.1   3.9    1.0  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD
     0.0038   17.4   0.1     0.0055   16.9   0.1    1.3  1  SdrD_B       SdrD B-like domain
     0.0069   16.2   0.9      0.011   15.6   0.9    1.2  1  TACC_C       Transforming acidic coiled-coil-containing prote
  ------ inclusion threshold ------
       0.03   14.4   0.8      0.056   13.6   0.8    1.4  1  DUF148       Domain of unknown function DUF148
      0.059   13.8   0.1        0.1   13.0   0.1    1.4  1  DUF4140      N-terminal domain of unknown function (DUF4140)
       0.25   11.5   0.9       0.46   10.6   0.9    1.4  1  CBP_BcsF     Cellulose biosynthesis protein BcsF
       0.77    9.7   2.9        1.4    8.8   2.9    1.4  1  Tail_VII     Inovirus G7P protein


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.1   3.9   2.1e-50   5.5e-47       2     181 ..      22     206 ..      21     207 .. 0.93

  Alignments for each domain:
  == domain 1  score: 160.1 bits;  conditional E-value: 2.1e-50
  EMP24_GP25L   2 ltfklpageekCfyeelkkgtlltgsyqvtdgg.......aaldvdlsvkdpdgngerlvkkkdresegdfsftakesgeykvCfdnsfstkss.kkv 91 
                  ++f+ ++ge +Cfye+l++g+ll +++++  ++       ++ +v++sv ++++n++r++++k+++++ df+fta+++ge++vCf++ f++ +s ++v
   CCD23825.1  22 IYFYANSGEVRCFYENLSSGQLLIADIDTSVEKngiyeedQDVTVSISVDETFDNNHRVLNQKNSHTG-DFAFTALDDGEHRVCFTPYFADTKSkIRV 118
                  79***************************966667888767788888999************777655.********************998778999 PP

  EMP24_GP25L  92 sfdievgseasdykdsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyLkrfF 181
                  ++++e+ + +  + ds+ ke++e+++++  +l+ +l++i++eqk +re+e+ +rd +e +ns++ +wsilq++vl++++++q+ yL++fF
   CCD23825.1 119 FVELEIDHVS--SLDSQRKEDVESMKRRTSQLIGRLNKIRQEQKEIRENEAIFRDESEAANSKIRFWSILQVIVLIVICWFQLGYLRNFF 206
                  9999996554..569*************************************************************************** PP

>> SdrD_B  SdrD B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   2.1e-06    0.0055      12      65 ..      53     106 ..      46     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.1e-06
      SdrD_B  12 nknGiqdagekgisgvtVtLkdakgevvatttTdasGkYkFtnltpGeYkVeft 65 
                 +knGi++++++    + V  + ++++ v ++  +++G ++Ft l++Ge +V ft
  CCD23825.1  53 EKNGIYEEDQDVTVSISVDETFDNNHRVLNQKNSHTGDFAFTALDDGEHRVCFT 106
                 79****99998888899998889999999999*********************6 PP

>> TACC_C  Transforming acidic coiled-coil-containing protein (TACC), C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.9   4.2e-06     0.011      66     126 ..     120     180 ..     107     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.2e-06
      TACC_C  66 akkeiqkvleekeqlladlnsveksfsdlfkryekqkevlegykkneeslkkcaeeylarv 126
                  + ei++v +  +q ++d++s+++  s+l+ r++k ++  ++ ++ne++++ + e   +++
  CCD23825.1 120 VELEIDHVSSLDSQRKEDVESMKRRTSQLIGRLNKIRQEQKEIRENEAIFRDESEAANSKI 180
                 5678889999999*************************************99988776666 PP

>> DUF148  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   2.2e-05     0.056      35      86 ..     125     176 ..     110     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.2e-05
      DUF148  35 deykefeakvkaqkeevkknvtavisnLssvqekleaIldnkslTrkeqkea 86 
                 d ++ + +++k+  e++k ++++ i +L ++ ++ ++I +n+   r+e ++a
  CCD23825.1 125 DHVSSLDSQRKEDVESMKRRTSQLIGRLNKIRQEQKEIRENEAIFRDESEAA 176
                 56788999*********************************99888887765 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     4e-05       0.1      14      98 .]      91     183 ..      79     183 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4e-05
     DUF4140  14 ikv.elkaGtnevtiegLpptldedS.lrVega...gaatildvqvervpnreaeee.....elkalraeleeledelaaledelaaaearlafl 98 
                 + + +l +G+++v +   p  +d++S +rV  +   +++  ld q +++ ++ + ++     +l+++r+e +e+++  a  +de +aa+++++f+
  CCD23825.1  91 FAFtALDDGEHRVCF--TPYFADTKSkIRVFVEleiDHVSSLDSQRKEDVESMKRRTsqligRLNKIRQEQKEIRENEAIFRDESEAANSKIRFW 183
                 566458888888888..5667777776666644334555555555555555555555999988**************************999986 PP

>> CBP_BcsF  Cellulose biosynthesis protein BcsF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.9   0.00018      0.46       5      25 ..     184     204 ..     181     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
    CBP_BcsF   5 DivqiiilcaLiflpLgylla 25 
                  i+q+i+l+++  + Lgyl  
  CCD23825.1 184 SILQVIVLIVICWFQLGYLRN 204
                 69****************965 PP

>> Tail_VII  Inovirus G7P protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   2.9   0.00056       1.4      10      27 ..     183     202 ..     181     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00056
    Tail_VII  10 wsticigl..VlvWFvLGrl 27 
                 ws+ ++ +  V++WF LG l
  CCD23825.1 183 WSILQVIVliVICWFQLGYL 202
                 66666543339*******76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1626  (0.0906911); expected 358.6 (0.02)
Passed bias filter:                      894  (0.0498633); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 1774.64
//
Query:       CCD23826.1  [L=564]
Description: hypothetical protein NDAI_0C01650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4535.10
//
Query:       CCD23827.1  [L=396]
Description: hypothetical protein NDAI_0C01660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     4e-115  383.9   0.0   5.7e-115  383.4   0.0    1.2  1  Septin           Septin
    4.5e-07   29.9   0.0    9.2e-07   28.9   0.0    1.5  1  MMR_HSR1         50S ribosome-binding GTPase
    0.00027   21.2   0.0    0.00057   20.2   0.0    1.7  1  AAA_22           AAA domain
    0.00042   19.4   0.2       0.51    9.3   0.1    2.2  2  DUF3987          Protein of unknown function (DUF3987)
    0.00085   19.3   5.5      0.001   19.0   0.3    3.1  3  RsgA_GTPase      RsgA GTPase
    0.00095   18.8   1.8      0.048   13.2   0.1    2.8  3  GTP_EFTU         Elongation factor Tu GTP binding domain
     0.0023   18.1   0.5     0.0056   16.9   0.0    1.9  2  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0039   17.3   3.5        4.6    7.3   0.0    3.2  3  Dynamin_N        Dynamin family
     0.0092   16.4   0.0      0.021   15.2   0.0    1.6  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.013   15.9   0.0      0.034   14.5   0.0    1.7  1  RNA_helicase     RNA helicase
      0.013   14.6   0.4      0.025   13.7   0.0    1.6  2  G-alpha          G-protein alpha subunit
      0.017   14.2   0.3       0.13   11.3   0.1    2.2  2  IIGP             Interferon-inducible GTPase (IIGP)
      0.023   14.2   0.0      0.043   13.3   0.0    1.4  1  Pox_A32          Poxvirus A32 protein
      0.033   13.5   0.0      0.076   12.3   0.0    1.6  1  AIG1             AIG1 family
      0.037   13.8   0.5       0.11   12.2   0.5    1.9  1  AAA_24           AAA domain
      0.048   13.6   0.0      0.092   12.7   0.0    1.4  1  NACHT            NACHT domain
      0.052   14.1   0.1       0.17   12.4   0.0    1.9  2  ABC_tran         ABC transporter
      0.057   12.8   0.0        0.1   11.9   0.0    1.4  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.083   12.4   0.1       0.24   10.9   0.0    1.7  2  AAA_7            P-loop containing dynein motor region
      0.088   12.5   1.7        0.2   11.4   0.3    2.3  3  PduV-EutP        Ethanolamine utilisation - propanediol utili
       0.14   11.8   0.0       0.25   11.0   0.0    1.3  1  Sigma54_activat  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.4   0.0  6.7e-118  5.7e-115       1     277 [.      31     314 ..      31     318 .. 0.95

  Alignments for each domain:
  == domain 1  score: 383.4 bits;  conditional E-value: 6.7e-118
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylre 99 
                 +g +ftlmv+GesglGktt+intlf+t+l++++ ++++   +kktv+i+  ++++ee+++ l+++viDtpgfGd+v+n+k+w+p++++id+q+++y+r+
  CCD23827.1  31 RGGSFTLMVCGESGLGKTTFINTLFQTTLKHQDAQQRRYTPIKKTVDIDIIRAILEEKNFSLRVNVIDTPGFGDNVNNNKAWQPLIDFIDDQHDSYMRQ 129
                 6899*****************************999999************************************************************ PP

                 CTSS--SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-.......SCCH CS
      Septin 100 esklkRkkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeede.......deea 191
                 e++ +Rk ++D RvHa+lyfi+Ptghglkpld+e+mk+ls+++nliPviaK+Dtlt++El+ fK++ir+ +e++ei+i+++ + e+ +       d+ a
  CCD23827.1 130 EQQPYRKVKFDLRVHAVLYFIKPTGHGLKPLDIETMKRLSTRANLIPVIAKSDTLTAQELQVFKSRIRQVIEAQEIRIFTP-PLETGSvkddespDSPA 227
                 ********************************************************************************4.44333333445557788 PP

                 HHHHHHHHHC-SEEB-SSSSEEEE.SSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XXXX CS
      Septin 192 kelseklkeslPfaivgsneliek.kgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklsklke 277
                 +e++++l es+Pfa+vgs++++++ +g+ v +R+ypWG+ve+en++h+dF kLr lll+t+l dL+ +teel+YetyR+ +l+  ++
  CCD23827.1 228 MEHARQLIESMPFAVVGSENKYDNgQGTPVVARQYPWGLVEIENDSHCDFRKLRGLLLRTYLLDLILTTEELHYETYRRLRLEGGNS 314
                 9********************************************************************************998765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.1e-09   9.2e-07       3     101 ..      38     168 ..      36     181 .. 0.58

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1.1e-09
                 EEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE.........ETT..EEEEEEECGGC................SSHHHHHH..HHHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk.........lkg..keielvDtpGl................iegaseek..glgkafla 72 
                 ++ G +  GK+t+in+l++++ + +d ++   ++++++v+         +k+   +++++DtpG+                i++++++   ++++ +++
  CCD23827.1  38 MVCGESGLGKTTFINTLFQTTLKHQDAQQRRYTPIKKTVDidiiraileEKNfsLRVNVIDTPGFgdnvnnnkawqplidfIDDQHDSYmrQEQQPYRK 136
                 799***************976666666666666666666522222222222222559*******77777777777766554332233223334444443 PP

                 ...HHCTSEEEEEEETTTTCSHHHHHHHHHHH CS
    MMR_HSR1  73 ...leeadlillvvdaseeklkpldeeleell 101
                      +++++l+ ++ + ++lkpld e  + l
  CCD23827.1 137 vkfDLRVHAVLYFIKPTGHGLKPLDIETMKRL 168
                 21144677788887755567888876655554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   6.7e-07   0.00057       8      38 ..      37      87 ..      31     178 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 6.7e-07
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee....................e 38
                l+v+GesG GKTt +++l+++  ++++a++                    e
  CCD23827.1 37 LMVCGESGLGKTTFINTLFQTTLKHQDAQQrrytpikktvdidiiraileE 87
                78*******************998887777665555555444444444441 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0013       1.1      22      78 ..      24      76 ..       1      89 [. 0.79
   2 !    9.3   0.1    0.0006      0.51     285     319 ..     353     388 ..     322     391 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0013
     DUF3987 22 rvrvepkrgyteplnLytlvvapsGerKSpvdklvlrpleeieaelreeyeeelkey 78
                r+++   rg     +  ++v+++sG +K++  +++ +   +++++ +++y + +k  
  CCD23827.1 24 RYKIANERGG----SFTLMVCGESGLGKTTFINTLFQTTLKHQDAQQRRYTPIKKTV 76
                4444444444....77889*******************************9887765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0006
     DUF3987 285 kerfneffn.elesrlrpggdledirdwasKlagnv 319
                 ++rf+++++  +++r+r +gdledi++ ++Kl ++v
  CCD23827.1 353 EQRFRQWEQnIVNERIRLNGDLEDIQSKVKKLEEQV 388
                 689****662666667****************9987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   1.2e-06     0.001     100     161 ..      35     102 ..       6     106 .. 0.65
   2 ?    0.5   0.0      0.57   4.8e+02      45      75 ..     170     199 ..     164     210 .. 0.82
   3 ?   -1.5   0.2       2.3     2e+03      64      99 ..     348     383 ..     335     389 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.2e-06
                  SEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEE.ETT......TEEEESS-SS CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavelle.lae......gglliDtPGf 161
                   t +++G+SG GK+t+in+l ++ +lk ++ +++  +    T    +++ + e         +iDtPGf
   CCD23827.1  35 FTLMVCGESGLGKTTFINTLFQT-TLKHQDAQQRRYTPIKKTVDIDIIRaILEeknfslRVNVIDTPGF 102
                  57789***************998.566666665555554444444444311112233335678888888 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.57
                  TT-EEEEEEE-GGG--HHHHHHHHHHHHHHT CS
  RsgA_GTPase  45 kgiepvivlnKiDlleeeeeleelkeeleal 75 
                  ++++++ v+ K D l+ +e l+ +k++++++
   CCD23827.1 170 TRANLIPVIAKSDTLTAQE-LQVFKSRIRQV 199
                  567778899**********.99888888875 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.3
                  HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  64 eleelkeelealgyevllvsaktkegleelkellkd 99 
                  ++++ ++++++++ +++  + + + +le++++++k+
   CCD23827.1 348 QVKAEEQRFRQWEQNIVNERIRLNGDLEDIQSKVKK 383
                  578888999999999999999988999999888775 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   5.7e-05     0.048       6      85 ..      37     107 ..      34     118 .. 0.77
   2 ?    3.4   0.0     0.059        50     121     154 ..     170     209 ..     154     258 .. 0.74
   3 ?   -2.4   0.0       3.4   2.9e+03      32      52 ..     335     355 ..     326     360 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.7e-05
                 EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHH CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFsk 85 
                 ++++g    GKtT++ +L ++t + +++++         ++ +  ++ + i++  + le++  + ++n+iDtPG  d ++
  CCD23827.1  37 LMVCGESGLGKTTFINTLFQTTLKHQDAQQ---------RRYTPIKKTVDIDIIRAILEEKNFSLRVNVIDTPGFGDNVN 107
                 7899999************88888666333.........345566777777777777887788899********877555 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.059
                 TTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH.....H CS
    GTP_EFTU 121 egvpiivfiNKmDrl.kaelkeiveevkqklsrk.....e 154
                  + ++i +i K D l  +el+  ++ ++q ++++     +
  CCD23827.1 170 TRANLIPVIAKSDTLtAQELQVFKSRIRQVIEAQeirifT 209
                 46679**********9999999999999998665444440 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.4
                 HHHHHHHHHSTHCHSHHHHHH CS
    GTP_EFTU  32 kkgekaeeervlDtlkeErer 52 
                 k++e+a ++ ++D+ k+E++r
  CCD23827.1 335 KEEENALKKYFTDQVKAEEQR 355
                 334445456789999999998 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.6e-06    0.0056       2      65 ..      37     101 ..      36     107 .. 0.76
   2 ?   -2.8   0.1       8.2     7e+03      87     102 ..     346     363 ..     329     367 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.6e-06
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCT..TBTTTTCEEEEEEEE-S CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgve..ndkkvkkvklniWDtaG 65 
                 ++++G+sg GKt++++ + + + +++  +   ++ ++k+v +i+ ++   ++k  ++++n+ Dt G
  CCD23827.1  37 LMVCGESGLGKTTFINTLFQTTLKHQDAQQRRYTPIKKTV-DIDIIRaiLEEKNFSLRVNVIDTPG 101
                 799*********************9999999999888877.5554431122333346677777765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8.2
                 EE..GHHHHCHHHHHHHH CS
         Roc  87 yd..srssenlkeWlkel 102
                 +d  + +++++++W +++
  CCD23827.1 346 TDqvKAEEQRFRQWEQNI 363
                 233333456677777776 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0053       4.6       2      22 ..      38      58 ..      37      74 .. 0.87
   2 ?    4.5   0.0     0.037        32     100     119 ..      91     110 ..      59     132 .. 0.67
   3 ?    5.0   0.4     0.027        23      42      94 ..     332     385 ..     303     393 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0053
                EEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlged 22
                +v+G+   GK++++n L +  
  CCD23827.1 38 MVCGESGLGKTTFINTLFQTT 58
                89***************9876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.037
                 S-SEEEEE---B-SSSGTTS CS
   Dynamin_N 100 vkgltlvDlPGldsvnkrdq 119
                   +++++D+PG+ ++ ++++
  CCD23827.1  91 SLRVNVIDTPGFGDNVNNNK 110
                 467889******99776665 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.027
                 CT---CCS...SSEEEE.T-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEE CS
   Dynamin_N  42 eeeeaseravkeelkek.ekkledfsevreeieketekiagankgiskkvillk 94 
                  + +++e+a k+ + ++ +++++ f + +++i +e+ +++g +++i++kv +l+
  CCD23827.1 332 PKYKEEENALKKYFTDQvKAEEQRFRQWEQNIVNERIRLNGDLEDIQSKVKKLE 385
                 4444445566777777799999************************99987766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.5e-05     0.021      23      88 ..      33      87 ..      22     132 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.5e-05
      AAA_16 23 rpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqllde 88
                ++  +++ GesG GK++ +++l++   k+      ++       ++y ++ ++ +  +++r++l+e
  CCD23827.1 33 GSFTLMVCGESGLGKTTFINTLFQTTLKH----QDAQQ------RRYTPIKKTVDI-DIIRAILEE 87
                445789*****************855555....22222......244555555533.555555555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     4e-05     0.034       2      36 ..      38      70 ..      37      81 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4e-05
  RNA_helicase  2 wlyGpsgeGKStlakeLakallkklklkkkdsvys 36
                  +++G+sg GK+t++++L ++ lk+   + +++ y+
    CCD23827.1 38 MVCGESGLGKTTFINTLFQTTLKHQ--DAQQRRYT 70
                  79********************988..33345555 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     3e-05     0.025      19     113 ..      30     127 ..      18     248 .. 0.61
   2 ?   -1.6   0.1       1.4   1.2e+03      44      61 ..     342     361 ..     289     394 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-05
                 XE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT................HHHC-SS-SCCCS-HCHHH CS
     G-alpha  19 kkkrevkllllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsiktilealesleselsesf.........elqelkerldplkkveasl 108
                 ++   ++l+++G+s+ GK+T+++ l     k +++ + + ++++  +  ++ i+ ile+ ++   +l   +         ++ +++++ +pl ++ ++ 
  CCD23827.1  30 ERGGSFTLMVCGESGLGKTTFINTLFQTTLK-HQDAQQRRYTPIKKTVDIDIIRAILEEKNF---SLR--VnvidtpgfgDNVNNNKAWQPLIDFIDDQ 122
                 3346789**************9886633333.333333445553333334444444444444...332..22345556776667777777776666654 PP

                 H.... CS
     G-alpha 109 iakls 113
                 +++  
  CCD23827.1 123 HDSYM 127
                 44333 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.4
                 HHHCS----HHHH..HCCHH CS
     G-alpha  44 kllykkgfseeel..atwra 61 
                 k++++++++ ee   ++w +
  CCD23827.1 342 KKYFTDQVKAEEQrfRQWEQ 361
                 22222222222111222222 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00015      0.13      36      56 ..      35      55 ..      24     103 .. 0.85
   2 ?    1.1   0.0       0.2   1.7e+02     215     285 ..      62     137 ..      55     145 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
                EEEEEEESTTSSHHHHHHHHT CS
        IIGP 36 lkiavtGdsGnGkssFinaLR 56
                  ++v G+sG Gk +Fin+L 
  CCD23827.1 35 FTLMVCGESGLGKTTFINTLF 55
                5689***************95 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.2
                 HHS-GGGHHHHHHHS-.--SHHHHHHHHHHHHHHHHH.....HHHHT--BSS-CCCSS--HHHHHHHHHHHHHHHHH CS
        IIGP 215 kdlpaikrheflesls.nvtdkvieekreslkqkial.....ealkaalvsiiplltllkesdlenleeslklyrkv 285
                 +d  + ++  + +++  +++ +++eek+ sl+ +++      ++++++  +  pl+ ++ ++ +  +++  + yrkv
  CCD23827.1  62 QDAQQRRYTPIKKTVDiDIIRAILEEKNFSLRVNVIDtpgfgDNVNNNK-AWQPLIDFIDDQHDSYMRQEQQPYRKV 137
                 4555555555555553367888889999998888765333336777765.78999****999999999999999986 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.1e-05     0.043       9      38 ..      30      59 ..      22      64 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.1e-05
     Pox_A32  9 LlkkpFrlalvGgsGsGktvyLlsLlrtlv 38
                 +   F l + G+sG Gkt+++  L++t  
  CCD23827.1 30 ERGGSFTLMVCGESGLGKTTFINTLFQTTL 59
                556689********************9976 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.9e-05     0.076       2      67 ..      36     110 ..      35     118 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.9e-05
                 EEEEESSTTSSHHHHHHHHHTS--....SS--TTTS---SS-EEE..EEEETT....EEEEEEE--SCCCTTCCHH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkka....Fesklsaqsvtkkcqkk..srtwdg....kkinViDTPglfdlsvsad 67 
                 t+++ G +g Gk + +N++ +++      + + + +++ k++     ++  ++     ++nViDTPg  d  ++++
  CCD23827.1  36 TLMVCGESGLGKTTFINTLFQTTLkhqdAQQR-RYTPIKKTVDIDiiRAILEEknfsLRVNVIDTPGFGDNVNNNK 110
                 78999**************7666522213333.455666666543113333332344679*******988766665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.5   0.00013      0.11       5      24 ..      37      56 ..      34     146 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
      AAA_24  5 iliyGpsgiGKTtlakelgp 24
                +++ G+sg GKTt++++l +
  CCD23827.1 37 LMVCGESGLGKTTFINTLFQ 56
                789*************9933 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   0.00011     0.092       2      33 ..      36      67 ..      35      72 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00011
                CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegklpqga 33
                ++++ Ge+G GKTt++  l ++  + ++ q++
  CCD23827.1 36 TLMVCGESGLGKTTFINTLFQTTLKHQDAQQR 67
                67899**************9988777777764 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00019      0.17      14      51 ..      37      74 ..      32     140 .. 0.77
   2 ?   -2.3   0.1       6.7   5.7e+03      76      76 ..     364     364 ..     320     394 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00019
                EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteGeilldgkdlke 51
                + + Ge+G GK+t++++l + + + ++  + + +++k+
  CCD23827.1 37 LMVCGESGLGKTTFINTLFQTTLKHQDAQQRRYTPIKK 74
                6789**************99988877776666666665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.7
                 H CS
                 x RF
    ABC_tran  76 v 76 
                 v
  CCD23827.1 364 V 364
                 1 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012       0.1      42      69 ..      37      64 ..       9      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                  EEEE--TTSSHHHHHHHHHHHHHTT--T CS
  FtsK_SpoIIIE 42 llvaGatgsGKStalntLilSlatthtP 69
                  l+v+G +g GK+t++ntL +  +  +++
    CCD23827.1 37 LMVCGESGLGKTTFINTLFQTTLKHQDA 64
                  89****************9887766665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00028      0.24      35      63 ..      36      65 ..      27      92 .. 0.78
   2 ?   -2.8   0.0       4.3   3.7e+03      54      98 ..     165     212 ..     149     217 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00028
       AAA_7 35 pvllvGptGtGKtviikd.llkkldkekyl 63
                 ++++G++G GKt+ i++ + ++l++++ +
  CCD23827.1 36 TLMVCGESGLGKTTFINTlFQTTLKHQDAQ 65
                689***************666677755544 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.3
       AAA_7  54 lkkldkekylsltinfsaqtsanqlqdi...iesklekrrkgvygPpg 98 
                 +k+l+++  l+ +i  s + +a++lq +   i + +e ++ +++ Pp 
  CCD23827.1 165 MKRLSTRANLIPVIAKSDTLTAQELQVFksrIRQVIEAQEIRIFTPPL 212
                 566666666666677777777777764333377788888888888876 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00024       0.2       4      36 ..      37      69 ..      35      99 .. 0.78
   2 ?   -0.9   0.0       1.5   1.3e+03      37      45 ..      93     101 ..      86     119 .. 0.71
   3 ?   -2.6   0.0       4.9   4.2e+03      91     117 ..     173     198 ..     166     209 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
   PduV-EutP  4 illiGkvgsGKttLtqalkgeelkYkktqaief 36
                +++ G++g GKtt  ++l + +lk +  q+  +
  CCD23827.1 37 LMVCGESGLGKTTFINTLFQTTLKHQDAQQRRY 69
                799***********************9997554 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.5
   PduV-EutP  37 sdeviDtPG 45 
                   +viDtPG
  CCD23827.1  93 RVNVIDTPG 101
                 5689****8 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 4.9
   PduV-EutP  91 eviGiitkidlaedeenieaveelLks 117
                 ++i +i k d+  + +++++ ++++++
  CCD23827.1 173 NLIPVIAKSDTL-TAQELQVFKSRIRQ 198
                 567778888877.66666666666554 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0003      0.25      21      50 ..      33      62 ..      17      89 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0003
                     SSS-EEEECSTTSSHHHHHHHHHHHSTTTT CS
  Sigma54_activat 21 tdlsvlitGesGtGKellaraiheaskrke 50
                      + ++++ GesG GK+++ +++++++ +++
       CCD23827.1 33 GSFTLMVCGESGLGKTTFINTLFQTTLKHQ 62
                     44899*****************99554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1293  (0.0721178); expected 358.6 (0.02)
Passed bias filter:                      731  (0.0407719); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 2805.65
//
Query:       CCD23828.1  [L=353]
Description: hypothetical protein NDAI_0C01670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-50  171.2   0.1    3.3e-50  171.0   0.1    1.0  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    3.4e-19   69.2   0.2    1.6e-16   60.6   0.0    3.2  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    1.3e-15   57.5   0.2    5.1e-14   52.2   0.0    2.0  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.3e-06   27.8   0.2       0.54    9.3   0.1    4.1  4  GIDA           Glucose inhibited division protein A
    0.00021   21.7   0.0      0.039   14.4   0.0    2.3  2  NAD_binding_7  Putative NAD(P)-binding
    0.00084   18.7   0.0     0.0058   15.9   0.0    2.1  2  Thi4           Thi4 family
     0.0013   18.9   0.0       0.23   11.7   0.0    2.5  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0065   15.6   0.0       0.98    8.5   0.0    3.4  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
     0.0066   15.6   3.5       0.88    8.6   0.2    3.1  4  FAD_binding_2  FAD binding domain
     0.0096   15.2   0.2          3    7.0   0.1    2.7  3  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
      0.012   15.6   0.0        5.4    7.1   0.0    2.6  3  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
       0.03   13.7   0.5       0.45    9.8   0.1    2.2  2  FAD_oxidored   FAD dependent oxidoreductase
      0.039   13.5   0.4        1.3    8.5   0.0    2.5  3  DAO            FAD dependent oxidoreductase
      0.061   12.0   0.4        2.6    6.6   0.2    2.8  3  HI0933_like    HI0933-like protein


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.0   0.1   2.6e-53   3.3e-50       2     293 ..      39     337 ..      38     338 .. 0.91

  Alignments for each domain:
  == domain 1  score: 171.0 bits;  conditional E-value: 2.6e-53
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH.........HHHHCHHHHCCCCHCCTCEEEEESCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias.........evvkklnqgielllgeevvkidpgkkkvkl 87 
                  +v +iG+GpA+++aa++la+a++k +l+e   ++g   +g+   +++++++++++e ++         e+  +++ g + ++ e+v k+d  ++ +kl
   CCD23828.1  39 KVTIIGSGPAAHTAAIYLARAEIKPILYEgmmANGIAAGGQLTTTTEIENFPGFPEGLTgselmdrmrEQ--SVKFGTTIIT-ETVAKVDLSSRPFKL 133
                  899*************************99*9**************************9**777555433..3333433333.479************ PP

                  TEEECTCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  88 ekkkegdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkel 185
                   ++ ++d+e i+ d+++lAtG+s+++l++pG+++++++++++++ +++     ++k ++v+GgG  ++E A++l+k+g++v+l+ + d+l       +
   CCD23828.1 134 WTEFNEDQEPITTDAIILATGASAKRLHLPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVYLIVRKDHLR------A 225
                  ******************************************************************************************7......9 PP

                  HHHHHHHHHHT.TEEEEESCEEEEEEETTE.....EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTSB.ESSTTEEE-G CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
  Pyr_redox_2 186 saaleealeke.Gvevklgtsvkeidgnge.....kle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdeflr.tnvpgiyaiG 275
                  s +++++   + ++ev ++t+  e++g+g+     +++ v++++++ ++a  +++a+G  p t+++  + ++ +d +g+i++ + +  t+vpg +a+G
   CCD23828.1 226 STIMQKRAMTNpKIEVLFNTVTLEAKGDGKflnslRIKnVQTNQESDLEANGLFYAIGHNPATSIV--AGQVDTDAAGYIKTVPGSSlTSVPGFFAAG 321
                  999999888888*********************766669************************995..9***********7777664389******** PP

                  GGCTECCSS--HHHHHHH CS
                  xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 276 DvaggkggpelaqaAvqq 293
                  Dv+  ++++++a ++  +
   CCD23828.1 322 DVQ--DSRYRQAITSAGS 337
                  ***..8888888777655 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.087   1.1e+02       1      22 [.      39      60 ..      39      72 .. 0.87
   2 ?    1.2   0.0      0.45   5.7e+02      43      64 ..      98     119 ..      82     129 .. 0.72
   3 !   60.6   0.0   1.2e-19   1.6e-16       2      79 ..     191     263 ..     190     269 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.087
                EEEEECSSHHHHHHHHHHHHTT CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelg 22
                kv+++G+G  +  +A +la+  
  CCD23828.1 39 KVTIIGSGPAAHTAAIYLARAE 60
                699***************9865 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.45
                 HHHHHHHHHHTTEEEECSEEEE CS
   Pyr_redox  43 skilqeklekngievllntkve 64 
                 +++l+++++++ +++ +   +e
  CCD23828.1  98 GSELMDRMREQSVKFGTTIITE 119
                 6789999999977665543333 PP

  == domain 3  score: 60.6 bits;  conditional E-value: 1.2e-19
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn.gievllntkveeiegsedgvesvklk 79 
                 ++v+GgG++++E+A++l+++g+kV++++r+d+l+      as+i+q++   n +ievl+nt++ e +g+++ ++s+++k
  CCD23828.1 191 LAVIGGGDSACEEAQFLTKYGSKVYLIVRKDHLR------ASTIMQKRAMTNpKIEVLFNTVTLEAKGDGKFLNSLRIK 263
                 68********************************......*********9999***************99767777765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.031        39       2      27 ..      42      65 ..      33      76 .. 0.78
   2 !   52.2   0.0     4e-17   5.1e-14      83     305 .]     101     321 ..      78     321 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.031
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagledylil 27
                 IiG GPa  +aai l +a+++   il
   CCD23828.1 42 IIGSGPAAHTAAIYLARAEIKP--IL 65
                 8899999999999888888864..44 PP

  == domain 2  score: 52.2 bits;  conditional E-value: 4e-17
  Pyr_redox_3  83 aleYlrevaksfelpiklfeeVesvkkedegfevet....sketyeAkkviiAtGefdkPnklnipGeek...lvkhyskvk..efhkyagqkvvViG 171
                  +++ +re   +f   i   e+V +v+ +++ f++ t    ++e ++++ +i+AtG     ++l+ pGee    + +    v   ++  ++++ ++ViG
   CCD23828.1 101 LMDRMREQSVKFGTTII-TETVAKVDLSSRPFKLWTefneDQEPITTDAIILATGA--SAKRLHLPGEETywqQGISACAVCdgAVPIFRNKPLAVIG 195
                  55555555555555554.46799999999999887733224679***********9..9999*******633344555555322455678999***** PP

  Pyr_redox_3 172 gknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykp 269
                  g++Sa++ A  l ++g++V +++r+++++++     ++ ++++++++e l ++ ++++  +   k ++   +  +v+t++++ +e  +  ++a+G +p
   CCD23828.1 196 GGDSACEEAQFLTKYGSKVYLIVRKDHLRASTI---MQKRAMTNPKIEVLFNTVTLEAKGD--GKFLNSL-RIKNVQTNQESDLE-ANGLFYAIGHNP 286
                  **************************9999853...3347888888888887544555544..4444433.34467788866655.5889******** PP

  Pyr_redox_3 270 dlsflkkslfeldedgrpvlteeteetnvpglflaG 305
                   +s+++  ++++d+ g+++  +    t vpg f aG
   CCD23828.1 287 ATSIVA-GQVDTDAAGYIKTVPGSSLTSVPGFFAAG 321
                  ***999.9999**********************999 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00042      0.54       1      29 [.      39      70 ..      39      94 .. 0.82
   2 ?    2.6   0.0     0.046        59     112     156 ..     115     161 ..      99     176 .. 0.72
   3 !    8.0   0.0     0.001       1.3       3      31 ..     192     220 ..     190     273 .. 0.87
   4 ?    3.1   0.0     0.033        42     353     390 ..     312     351 ..     304     353 .] 0.79

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00042
                CEEEE-SSHHHHHHHHHHHHTT--EEEE...E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi...t 29
                +v++iG G A   AA+ +ar+ +k +L+    
  CCD23828.1 39 KVTIIGSGPAAHTAAIYLARAEIKPILYegmM 70
                699*********************99995440 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.046
                 EEEES-EEEEEECT..TEEEEEEETTS-EEEECEEEE--TT-BT-EE CS
        GIDA 112 eiieeeveelivee..kkvkgvvtedgetikakavviatGtflkgki 156
                 +ii+e+v+++++++   k+     ed+e i+++a+++atG+  k   
  CCD23828.1 115 TIITETVAKVDLSSrpFKLWTEFNEDQEPITTDAIILATGASAKRLH 161
                 56677777666655334445556789999***********9433333 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.001
                 EEE-SSHHHHHHHHHHHHTT--EEEEES- CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLithk 31 
                  ViGgG + ce A  + + G kv Li+ k
  CCD23828.1 192 AVIGGGDSACEEAQFLTKYGSKVYLIVRK 220
                 7*************************433 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.033
                 SSSBTEEE-CGGGTB-SHHHH...HHHHHHHHHHHHHHHCT CS
        GIDA 353 kkvkgLflAGqinGteGYeEa...aaqGllAGinaarkakg 390
                  +v+g f+AG++     Y  a   a++G++AG+ a +++ +
  CCD23828.1 312 TSVPGFFAAGDVQDSR-YRQAitsAGSGCMAGLDAEKYLTE 351
                 568999******9998.766522167*********998876 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.021        27       3      38 ..      33      68 ..      31     158 .. 0.78
   2 !   14.4   0.0   3.1e-05     0.039       5      41 ..     186     222 ..     185     292 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.021
  NAD_binding_7  3 ldlkgkkvlvvGgGevAarkvrklleagakvtvvap 38
                   +++   kv ++G G+ A + +  l++a+ k +++  
     CCD23828.1 33 TRMVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEG 68
                   5677889************99999999888777554 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3.1e-05
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapevk 41 
                    +++k   v+GgG+ A + ++ l ++g kv ++  + +
     CCD23828.1 186 FRNKPLAVIGGGDSACEEAQFLTKYGSKVYLIVRKDH 222
                    689999************************9988842 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.5e-06    0.0058      15      63 ..      35      80 ..      29      88 .. 0.86
   2 ?   -0.1   0.0      0.36   4.6e+02      33      97 ..     204     222 ..     186     270 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.5e-06
                HTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTT CS
        Thi4 15 yaesDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGql 63
                ++   v i+G+G++  taa yla++ ++k ++ e  ++ G  +  GGql
  CCD23828.1 35 MVHNKVTIIGSGPAAHTAAIYLARA-EIKPILYEGMMANG--IAAGGQL 80
                567889*******************.*********99875..6778877 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.36
                 HHHHHHCTTS-EEEEESSSS--TTTTTTSTTBSEEEEETTTHHHHHHTT---EEESSEEEESEHH CS
        Thi4  33 ayylakkpdlkvailersvspGGGawlGGqlfsaivvrkpakelLdelgikyedegdyvvvkdaa 97 
                 a+ l+k  + kv +                                             +v++  
  CCD23828.1 204 AQFLTKY-GSKVYL---------------------------------------------IVRKDH 222
                 5555554.444444.............................................444444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00018      0.23       1      27 [.      42      68 ..      42     103 .. 0.77
   2 ?    4.8   0.0     0.026        34       1      31 [.     193     223 ..     193     239 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
                   EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllek 27
                   I+G+G ++ +aA +La+a ++  l+e 
     CCD23828.1 42 IIGSGPAAHTAAIYLARAEIKPILYEG 68
                   9*****************999999983 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.026
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSS CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrl 31 
                    ++G+G s++  A++L+k+g +v l+ + d+l
     CCD23828.1 193 VIGGGDSACEEAQFLTKYGSKVYLIVRKDHL 223
                    8********************9998777776 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.23   2.9e+02     190     210 ..      36      56 ..      24      65 .. 0.74
   2 !    8.5   0.0   0.00076      0.98     132     230 ..     130     225 ..     105     247 .. 0.62
   3 ?    0.3   0.0      0.24     3e+02     290     340 ..     234     284 ..     222     286 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.23
  K_oxygenase 190 akkriaVvGsGqSaaeifedl 210
                   +++++++GsG  a   +  l
   CCD23828.1  36 VHNKVTIIGSGPAAHTAAIYL 56 
                  568999999998876555555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00076
  K_oxygenase 132 lltveskdaegeeeelearnlvlgvGtepk...iPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrse 226
                   +++ + + ++++e +++ +++l++G ++k   +P   +  +   + + +  +        ++k +aV+G+G Sa e ++ l++  +  ++ l++r++
   CCD23828.1 130 PFKLWT-EFNEDQEPITTDAIILATGASAKrlhLPGEETYWQ---QGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGS--KVYLIVRKD 221
                  355554.33455677777778888875553111444433332...333333444444346788999***********9998887766..778888887 PP

  K_oxygenase 227 alep 230
                  +l++
   CCD23828.1 222 HLRA 225
                  7765 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.24
  K_oxygenase 290 kgeerlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATGY 340
                   +++++++l n+   +a+ +gk    l ++n ++++e+ le++ +++A G 
   CCD23828.1 234 MTNPKIEVLFNTVTLEAKGDGKFLNSLRIKNVQTNQESDLEANGLFYAIGH 284
                  455566666666666666666667788899999999999999999998886 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.2   0.00069      0.88       2      35 ..      40      73 ..      39      84 .. 0.85
   2 ?   -0.0   0.0      0.28   3.5e+02     138     203 ..      96     157 ..      76     182 .. 0.68
   3 ?   -2.1   0.0       1.2   1.6e+03       3      35 ..     192     224 ..     191     235 .. 0.83
   4 !    5.9   0.1    0.0044       5.6     357     414 ..     273     336 ..     211     339 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00069
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqefg 35
                   v +iGsG A  +AA+ +a+a  k ++ e + + g
     CCD23828.1 40 VTIIGSGPAAHTAAIYLARAEIKPILYEGMMANG 73
                   679*******************999999887743 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.28
                    .HHHHHHHHHHHHHHTCTEEEEESEEE.EEEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----G CS
  FAD_binding_2 138 vtghallarlvesarkagvdfqertea.deLivedgrvtGavvenpesgrevrirakavvlatgGfg 203
                     tg +l+ r+ e+  k g+++ ++t a ++L       +   ++ + ++ ++ i+ +a++latg+  
     CCD23828.1  96 LTGSELMDRMREQSVKFGTTIITETVAkVDLSS-----RPFKLWTEFNEDQEPITTDAIILATGASA 157
                    588888999999998888777777665235543.....33333333445555566667777777655 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.2
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeqefg 35 
                     ViG+G + +  A  +++ G kv ++  ++  +
     CCD23828.1 192 AVIGGGDSACEEAQFLTKYGSKVYLIVRKDHLR 224
                    69********99999999999998887666555 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0044
                    E..........EEEEEEEES-EEEBETTSBE...STTEEESSBTEEE-STCEESSSSTTS--TT CS
  FAD_binding_2 357 p...gpfyavkvvpaqhytmgGvetdengrv...ldadgqpipGLYAaGevaaggvhganrlgG 414
                        g fya+   pa+   +g v td+ g      +++ + +pG +AaG v  + +  a   +G
     CCD23828.1 273 LeanGLFYAIGHNPATSIVAGQVDTDAAGYIktvPGSSLTSVPGFFAAGDVQDSRYRQAITSAG 336
                    133488999999****************988767889999**********99887776666555 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0023         3       3      27 ..      39      63 ..      37      86 .. 0.88
   2 !    5.0   0.0    0.0098        13       5      35 ..     192     222 ..     189     238 .. 0.80
   3 ?   -0.3   0.0      0.38   4.8e+02     109     188 ..     227     311 ..     223     343 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0023
                   EEEEE--SHHHHHHHHHHHHTTHHE CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrv 27
                   +V I+G+Gpa  ++a  L++a ++ 
     CCD23828.1 39 KVTIIGSGPAAHTAAIYLARAEIKP 63
                   799****************997765 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0098
                    EEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekrst 35 
                    +++G+G +    a++L+++G +v l+ + + 
     CCD23828.1 192 AVIGGGDSACEEAQFLTKYGSKVYLIVRKDH 222
                    69********************999987643 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.38
                    HHHHHHHHHHT.EEETCSEEEECCEECCCCCCC.EEEECCTTEEEEEEEE...EEEE--GTT-HHHHHHTGGEEEEEEEEEEEEE CS
  FAD_binding_3 109 riLvehaeerg.lqvrfktevesleqdeegvta.evrdketgeeetvrak...YlvGaDGgrStvrktlgiefegeetvyeagvl 188
                     i+ ++a   + ++v f+t ++  + d++  ++ ++++ +t++e++++a+   Y +G   + S+v+ +++++  g  ++++  +l
     CCD23828.1 227 TIMQKRAMTNPkIEVLFNTVTLEAKGDGKFLNSlRIKNVQTNQESDLEANglfYAIGHNPATSIVAGQVDTDAAGYIKTVPGSSL 311
                    6788888888889999999877666666655442677999999999999877799999999999999999998887777665554 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0042       5.4       9      39 ..      34      64 ..      28      67 .. 0.87
   2 ?   -3.2   0.0       6.3   8.1e+03      76      89 ..     146     159 ..     136     168 .. 0.82
   3 ?    5.7   0.0     0.012        15      11      56 ..     187     232 ..     177     248 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0042
                  ..TT-EEEEES-SHHHHHHHHHHHCCT-CEE CS
  Shikimate_DH  9 slkekkvlliGaGemaelvakhLlakgvkkv 39
                  ++ ++kv++iG G  a+ +a +L+++++k +
    CCD23828.1 34 RMVHNKVTIIGSGPAAHTAAIYLARAEIKPI 64
                  67789*******************9999866 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.3
                   -SEEEE-SSSSS-S CS
  Shikimate_DH  76 advvisataseepi 89 
                    d +i at+++   
    CCD23828.1 146 TDAIILATGASAKR 159
                   68999999987655 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.012
                   TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel 56 
                   ++k   +iG G  a + a+ L + g k  +++  ++ ra+++ ++ 
    CCD23828.1 187 RNKPLAVIGGGDSACEEAQFLTKYGSKVYLIVRKDHLRASTIMQKR 232
                   677789*********************99****9*****9999876 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00036      0.45       2      69 ..      40     107 ..      39     132 .. 0.70
   2 ?    1.9   0.0     0.089   1.1e+02      88     131 ..     224     270 ..     198     278 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00036
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGakvlLve....ergvlGGlltsglvatdignkaeeqvvtgiareflerlrq 69 
                   v ++G+gpa  +AAi  ara  k +L e    +    GG+lt       +  + +++  + +  e+++r+r+
    CCD23828.1  40 VTIIGSGPAAHTAAIYLARAEIKPILYEgmmaNGIAAGGQLTTTT----EIENFPGFPEGLTGSELMDRMRE 107
                   89************************9955544455566666443....22222333344444566666655 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.089
  FAD_oxidored  88 vakavleeml.aeagvtvllntrlvevekegkriesvtveske.g.r 131
                    a +++++   ++++++vl+nt+  e++ +gk ++s+++++ + + +
    CCD23828.1 224 RASTIMQKRAmTNPKIEVLFNTVTLEAKGDGKFLNSLRIKNVQtNqE 270
                   56666666555899**************9994455555544442223 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3     0.084   1.1e+02       2      22 ..      40      60 ..      39      85 .. 0.85
   2 ?    8.5   0.0     0.001       1.3     147     207 ..     100     160 ..      91     178 .. 0.72
   3 ?   -2.4   0.0       2.2   2.8e+03       3      30 ..     192     221 ..     190     227 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.084
                EEEECTSHHHHHHHHHHHHTT CS
         DAO  2 vviiGGGiiGlstAyeLarrg 22
                v iiG+G +  ++A +Lar+ 
  CCD23828.1 40 VTIIGSGPAAHTAAIYLARAE 60
                89***************9975 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHTT-EEEESECEEEEEEEE..TCEEEEEEECTEEEEEEEEEEE--GGGHHHH CS
         DAO 147 kltaalaraaealGveilegtevtgleeed..gkvwgverttpgendaadavVnaaGawsdll 207
                 +l+  ++++  + G +i+++ +v +++  +   k+w+ +++ ++ + + da+++a+Ga ++ l
  CCD23828.1 100 ELMDRMREQSVKFGTTIITE-TVAKVDLSSrpFKLWTEFNEDQEPI-TTDAIILATGASAKRL 160
                 678888899999999****9.6666644222357788875544333.3599*******98744 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 2.2
                 EEECTSHHHHHHHHHHHHTT..EEEEESSS CS
         DAO   3 viiGGGiiGlstAyeLarrg..Vtllekgd 30 
                 ++iGGG   +  A +L++ g  V l+ ++d
  CCD23828.1 192 AVIGGGDSACEEAQFLTKYGskVYLIVRKD 221
                 899999999988989988888877776654 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.2     0.002       2.6       2      35 ..      39      72 ..      38      97 .. 0.89
   2 ?    2.0   0.0     0.054        69     115     165 ..     101     156 ..      91     160 .. 0.61
   3 ?   -0.8   0.0      0.38   4.9e+02       3      32 ..     191     220 ..     189     226 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.002
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVlllekakkl 35
                 +v +iG G+A   aAi +a+++ + +l+e + + 
   CCD23828.1 39 KVTIIGSGPAAHTAAIYLARAEIKPILYEGMMAN 72
                 799*************************998655 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.054
                  HHHHHHHHT-EEE-S...--EEEEECETTE.EEEEE....TTEEEEESEEEE----S CS
  HI0933_like 115 llkelkeagvklrle...tevksvekeedgkfrvkt...kseeeleadklvlAtGGl 165
                  l+ +++e+ vk+ +    ++v++v+ ++   f++ t   +++e +++d+++lAtG  
   CCD23828.1 101 LMDRMREQSVKFGTTiitETVAKVDLSSRP-FKLWTefnEDQEPITTDAIILATGAS 156
                  445555555555443111445566544443.5555523448999*********9975 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.38
                  EEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like   3 viviGgGaAGlmaAisaakrgkrVllleka 32 
                  ++viGgG +    A  + k g++V l+ ++
   CCD23828.1 191 LAVIGGGDSACEEAQFLTKYGSKVYLIVRK 220
                  68*******99999999*******998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2537.91
//
Query:       CCD23829.1  [L=183]
Description: hypothetical protein NDAI_0C01680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-15   55.2   0.0    7.6e-15   54.9   0.0    1.2  1  PX        PX domain
  ------ inclusion threshold ------
       0.15   12.3   0.4       0.26   11.6   0.4    1.4  1  TRL       TRL-like protein family


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   8.5e-19   7.6e-15      34     111 ..      92     182 ..      52     183 .] 0.93

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 8.5e-19
                 EEEEEEEHHHHHHHHHHHHHHHT......TSTSTSSSTSGSSSSS.....CTTSHHHHHHHHHHHHHHHHHHHTSCHHHH..SHHHHHHHH CS
          PX  34 ewtvkRrYsdFeeLhskLlrkfp......rvkiPplPkkvlfgsv.....rkkdeefiekrrkgLeeyLqrllnhpelrn..sevlteFLe 111
                   ++++rYsdFe+++skLl k        r  +P+lP+  +++++      ++d+++++krr gLe+++ ++++++++++  s++l++FLe
  CCD23829.1  92 LIQLYKRYSDFERFRSKLLIKIRevrpdlRNLVPELPPVIPWYKSwdydhLNFDKKWLAKRRIGLERFMSQVVSNSQITElaSDELKKFLE 182
                 5789**************************************988*****9***************************************8 PP

>> TRL  TRL-like protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4     3e-05      0.26      47      77 .]      34      64 ..      31      64 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3e-05
         TRL 47 nggItkiasvDyetksilglygkyctiVtGe 77
                 +++++i+ +  ++ +i  ++  +ctiVtG+
  CCD23829.1 34 SNNFDTISNISMSNIGIKKIIISDCTIVTGD 64
                789***************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1374.81
//
Query:       CCD23830.1  [L=816]
Description: hypothetical protein NDAI_0C01690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.6e-301 1001.8  34.6     3e-301 1001.6  34.6    1.0  1  SBE2      SBE2, cell-wall formation


Domain annotation for each model (and alignments):
>> SBE2  SBE2, cell-wall formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1001.6  34.6  1.7e-305    3e-301      39     820 .]      29     816 .]       2     816 .] 0.86

  Alignments for each domain:
  == domain 1  score: 1001.6 bits;  conditional E-value: 1.7e-305
        SBE2  39 agislsrdessstsakavGlgiarrpsdnllasisdnldgkqmlssevnealpqppkveihqtrrerpisndsivtkssevfssssddtqssassaetd 137
                    s+ + +   +s+ka+Glg+ rrpsdn+l +++++ + +     ++  ++  p+k     t++erp+sndsi+tks+e+fss+s+d +s  ss  ++
  CCD23830.1  29 QVLSSPKGSLNVSSSKASGLGL-RRPSDNILRTLTNEENIG-----FNPGDFTPPRKEL--MTKNERPVSNDSIATKSTEIFSSTSSDLNSRSSSIDNE 119
                 3333333333556899*****9.99*******998776654.....5555666366644..47*******************************99887 PP

        SBE2 138 eedeeeGi.dkdldnlstnp....silsekaeesradgdsvsireksnnsv.sestkdGsksalsksisvndtsaeksmnkarksyqeqfsskksqssl 230
                     + G  d ++d + +      s +++k  +  +  ++ +i+e+s     + +    + ++++ +isv ++ ++ + n++  + ++++ + +   + 
  CCD23830.1 120 IGATDIGDnDESIDSIDVDStidhSYMVKKKHNLISLQNTSTIDEESMAVHhNPTRLFSNGMRAQSQISVSHINNTYNNNNNNYNNNNNIHETRFGLAY 218
                 776666641455666666543332555555544444444444555554433033344456789999999998888888886666666666666664455 PP

        SBE2 231 lnlrqrsraksdkrs..........stlynlsnstsaivpnaktlkkkaltpsqryrlrkeqsetalrnsikrkeklydeqeqilelqeGdiddslifn 319
                  n + + ++     +            ly +snstsai+ n     k +ltpsqryrlr+eq e ++r++ik+kek+ydeq+++lel+eG+iddsli+n
  CCD23830.1 219 ANNKAQQNNM----TdgpkrlpnqrGGLYGHSNSTSAILAN-----KVPLTPSQRYRLRREQHEVSIRKAIKKKEKYYDEQDEVLELKEGEIDDSLIWN 308
                 5544444443....23344566666899***********99.....899************************************************** PP

        SBE2 320 vpmaslstnsflasakdkdsarsasskdlerftgg........eytkqnhrysnvsfastissaslldfkemptspipGvnkvsdlqfiqdttkslssv 410
                 +pmas+ t+sfl+ + ++    s+ +++ ++ t          ++ +  +   +  + s+  +as+l f emptspipG+n+vsd+q+iq+t+k+lssv
  CCD23830.1 309 IPMASFLTTSFLSKTPHSTPLASTRNSPVHKQTIPdlhheqrsHNYHHTDDNKEGKHHSSDRNASVLAFYEMPTSPIPGINRVSDFQYIQQTSKNLSSV 407
                 ************9987776666555555555443335544333122222223345799999************************************** PP

        SBE2 411 ylhssnrlsrsklsertksadvlpielkeasekGmedlilvsenkldvvshsrpswlppkdpeekklherqiskslsvasldqleknkdreeklikdet 509
                 ylhss++ls+sklsert+sa +lpie+k+as+kGmedl+lvs++kl  vs +rpswlppkd  ekk+h+++i+k +s+as++ql+knk+r+e++++det
  CCD23830.1 408 YLHSSEKLSKSKLSERTQSASCLPIEFKDASQKGMEDLLLVSNDKLHLVSQARPSWLPPKDIYEKKMHDKEITKKMSMASIEQLDKNKERDERILRDET 506
                 *************************************************************************************************** PP

        SBE2 510 nrqkyvllldrditrnsslqslkkliwetplsaetrssiydevlqsevrliteryiesfeeilkllnklelpknkeieieklieasiknkvsGkqdi.s 607
                 n+qky+lll+rd+trnsslqs kk++wet +s+etr s+y+++lqs++ lit++yie+++ + +ll k+++pk ke+eiek+i + ik kvs  + i s
  CCD23830.1 507 NKQKYILLLERDVTRNSSLQSCKKMVWETAFSNETRYSMYSQLLQSKIGLITKNYIEPYKYVTELLGKMDFPKGKEVEIEKIISKGIKAKVSSSKIIkS 605
                 *******************************************************************************************99887758 PP

        SBE2 608 ddlllllklksissqGivpGdellfhhllvdesfenlslnevwelvnliqltcfndltkekfdakilekkGvvakylsqddsfkdefnteclnsttwwn 706
                  dl+lllklksis+qG++pGdellfhh+l++esf+   l++vwe+vnl+qltcfnd+++ek+d  il+ +Gvva+yl++d+ fk+e+ + cln +twwn
  CCD23830.1 606 SDLMLLLKLKSISHQGLLPGDELLFHHFLISESFQS--LEQVWEIVNLLQLTCFNDVCREKYDLNILNSRGVVAHYLMKDEGFKQEYTSACLNYNTWWN 702
                 9********************************987..************************************************************* PP

        SBE2 707 ilervdhdlfmwildiivvansqsfknspinkekfknkdweyyrskkvvinykilisfalnvllnyhfGfndlksladvedkrfcipvsldnlldadei 805
                 iler+dh lfmwi+diivvan q+f  +p+  e fk+kdweyyrskkvv+nykil+sfalnvllnyhfGfndl  l+++edk+fcip++ld+lld+  i
  CCD23830.1 703 ILERIDHSLFMWIIDIIVVANNQCFNKHPVKVESFKDKDWEYYRSKKVVVNYKILLSFALNVLLNYHFGFNDLAQLSSLEDKKFCIPMPLDELLDTSAI 801
                 *************************************************************************************************** PP

        SBE2 806 navfikkwkhyykkf 820
                 n++f++kw+hyykkf
  CCD23830.1 802 NNMFVNKWQHYYKKF 816
                 **************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1207  (0.0673211); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 5690.94
//
Query:       CCD23831.1  [L=1020]
Description: hypothetical protein NDAI_0C01700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-72  244.0   0.0    2.7e-72  243.3   0.0    1.3  1  Pkinase         Protein kinase domain
    1.6e-52  178.3   0.0    2.5e-52  177.7   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    2.4e-07   29.9   0.1      2e-06   26.9   0.0    2.3  2  Pkinase_fungal  Fungal protein kinase
    4.3e-05   23.0   0.0     0.0011   18.4   0.0    2.2  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
       0.05   13.5   4.6      0.078   12.9   3.2    2.1  3  DUF4847         Domain of unknown function (DUF4847)
       0.12   12.0   0.4        2.6    7.6   0.0    2.5  2  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.3   0.0   9.2e-76   2.7e-72       2     264 .]      43     295 ..      42     295 .. 0.93

  Alignments for each domain:
  == domain 1  score: 243.3 bits;  conditional E-value: 9.2e-76
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 ++ e +G+G+fG Vyk+++ +t++i+A+K+++ ++++++ e +v+rEi++l++lk  pni r+y+++ ++++l++++ey+ gg+l +ll+  g+++e+ 
  CCD23831.1  43 RRTEVIGRGKFGIVYKGYHVKTKQIYAIKVLNLDSDEDEVE-DVQREIQFLASLKqLPNITRYYGSYLKDTSLWIIMEYCAGGSLRTLLR-PGKIDEKY 139
                 67899*****************************9999885.9************9*********************************7.699***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkpp 196
                 +  i+++il +l+y+H+ +iiHrD+K +N+Li ++g +K++DFG+a++l++s+k  +++ gt++++APEv+ ++  y++kvD+WslG++ ye+ tg+pp
  CCD23831.1 140 IGVITREILIALKYIHKDNIIHRDIKAANVLITNEGSIKLCDFGVAAQLNQSTKrRQTMAGTPYWMAPEVImEGVYYDTKVDIWSLGITTYEIATGNPP 238
                 ***************************************************99999***************777888********************** PP

                 TTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +           e++ l ++ ++++++k    e ++ s+ +k+++  +l++dpk+R++ae+ll+ +++
  CCD23831.1 239 YC----------EIEALRAM-QLITKSKPPRLEGRNYSPLLKEFVALCLDEDPKERMSAEDLLKTKFI 295
                 **..........34443333.3444557777788899***************************9986 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   0.0   8.5e-56   2.5e-52       4     256 ..      45     290 ..      42     292 .. 0.92

  Alignments for each domain:
  == domain 1  score: 177.7 bits;  conditional E-value: 8.5e-56
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  ++ +G+G+fG V++g+      k+++  a+K+l+ +++e+e e++ +e++++ +l + pni +++g ++k+ +l+i++ey++gG+L++ Lr     k+
   CCD23831.1  45 TEVIGRGKFGIVYKGYHV----KTKQIYAIKVLNLDSDEDEVEDVQREIQFLASLkQLPNITRYYGSYLKDTSLWIIMEYCAGGSLRTLLRPG---KI 135
                  689************999....889999***************************99*********************************997...99 PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwE 197
                  + k +  ++ ++  +++y+++ +++Hrd+ a NvL++++  +k++DfG+a ++  +++++++++      WmapE+++e++ + +k D+Ws G++++E
   CCD23831.1 136 DEKYIGVITREILIALKYIHKDNIIHRDIKAANVLITNEGSIKLCDFGVAAQL--NQSTKRRQTMAGTPYWMAPEVIMEGVyYDTKVDIWSLGITTYE 231
                  *****************************************************..455555555666668*********99789************** PP

                  HHTTSSGTTTTSHHHHHHHHHHTTEE.S-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 198 iftlgespypglkneevleklkegkr.lekpekcpeelyelmkkcweedpeeRptfselv 256
                  i+t g+ py ++++ ++++ ++++k    + ++ ++ l+e++  c++edp+eR + ++l+
   CCD23831.1 232 IAT-GNPPYCEIEALRAMQLITKSKPpRLEGRNYSPLLKEFVALCLDEDPKERMSAEDLL 290
                  ***.*****************5555415567889999*****************999886 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.16   4.7e+02     146     207 ..      40     106 ..      36     112 .. 0.69
   2 !   26.9   0.0   6.5e-10     2e-06     316     388 ..     148     212 ..     140     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.16
  Pkinase_fungal 146 plarqraivgRg..TtcwrarkegergkeyvvKdsWrdaer....k..sEaelLkkaeergvegvarlva 207
                      ++r+ +++gRg   +++++ + +++ + y +K    d++     +  +E ++L     ++  ++ r+++
      CCD23831.1  40 SVFRRTEVIGRGkfGIVYKGYHVKTK-QIYAIKVLNLDSDEdeveDvqREIQFLASL--KQLPNITRYYG 106
                     5789999999994459******9888.588888765544331111223677777777..77888888876 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 6.5e-10
  Pkinase_fungal 316 IkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                     + +++  + k +i+HrDi + N+lit     +e +  L D+ +a +l++  s++ +++  GT+++ma ev+++
      CCD23831.1 148 LIALKYIH-KDNIIHRDIKAANVLIT-----NEGSIKLCDFGVAAQLNQ--STKRRQTMAGTPYWMAPEVIME 212
                     56777788.99***************.....788999***********5..5556689**********99874 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.037   1.1e+02      14      51 ..      42      79 ..      36     100 .. 0.82
   2 !   18.4   0.0   3.5e-07    0.0011     153     254 ..     147     243 ..     134     271 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.037
  Kinase-like 14 lvrgellkkgdrsvvfevkdqetgeplavkvfllpsea 51
                 + r e++++g++++v++   ++t++  a+kv  l s+ 
   CCD23831.1 42 FRRTEVIGRGKFGIVYKGYHVKTKQIYAIKVLNLDSDE 79
                 56899**************************9998854 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.5e-07
  Kinase-like 153 lirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl..seve.kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclk 247
                  ++    ++++  ++h ++++ n+l  ++g ++l +f+   +  ++ +    +     +  pE++ + g       + +  k+d W lG++ y i+  +
   CCD23831.1 147 ILIALKYIHKDNIIHRDIKAANVLITNEGSIKLCDFGVAAQLNQSTKRrqTMAGtPYWMAPEVIME-G-------VYYDTKVDIWSLGITTYEIATGN 236
                  444457999**************************9865554444442102222233566888888.3.......445579**************998 PP

  Kinase-like 248 lPltlat 254
                   P  +++
   CCD23831.1 237 PPYCEIE 243
                  8877766 PP

>> DUF4847  Domain of unknown function (DUF4847)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         4   1.2e+04     109     121 ..      95     107 ..      79     110 .. 0.78
   2 ?   12.9   3.2   2.6e-05     0.078      23      94 ..     339     414 ..     334     435 .. 0.78
   3 ?   -3.8   0.0       3.8   1.1e+04      58      90 ..     780     812 ..     776     815 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4
     DUF4847 109 ieglknvtkYeGd 121
                 ++ l n+t+Y G 
  CCD23831.1  95 LKQLPNITRYYGS 107
                 5678899999996 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.6e-05
     DUF4847  23 edekeqfdfwdneeakkksie.llkkegnytvt..Fegteedg.iisgkvegkvisasltgtwsanGksnelkisv 94 
                 + +ke+ d +dn  +++ksi+  +++e+n  v+  F+    ++ ii+++++  +i +++t +wsa+G++++++   
  CCD23831.1 339 KSRKETSDNTDNTVTENKSIDkNIDEEENVDVKwdFDSLSSSEyIIENNINIDAIPEEATVDWSADGQQEHFNYAY 414
                 45556668888888888888626899999988633777666651566************************99765 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 3.8
     DUF4847  58 teedgiisgkvegkvisasltgtwsanGksnel 90 
                 ++ +++ s  ++ k ++++++g+++ n  + +l
  CCD23831.1 780 KTNNNMYSLPIKEKETTSRVNGDFKRNNPNLKL 812
                 556666677777777788888888777666555 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.082   2.4e+02      24      56 ..      42      76 ..      25      98 .. 0.68
   2 ?    7.6   0.0   0.00086       2.6     168     214 ..     134     185 ..     102     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.082
        FTA2 24 iefleyLgkglhsiVlk.vkirgk.eYALKlFrfl 56
                ++  e++g+g  +iV+k   +++k +YA+K+    
  CCD23831.1 42 FRRTEVIGRGKFGIVYKgYHVKTKqIYAIKVLNLD 76
                56689999999999999434554459****85433 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00086
        FTA2 168 keqeelevsqlpkllrdlkklhklgIvvrDlkeenyi...dg..kLvDlsaa 214
                 k +e+ +  +++++l  lk +hk  I++rD+k+ n++   +g  kL+D++ a
  CCD23831.1 134 KIDEKYIGVITREILIALKYIHKDNIIHRDIKAANVLitnEGsiKLCDFGVA 185
                 56777778899***********************997555334478999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1020 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1214  (0.0677115); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 6898.66
//
Query:       CCD23832.1  [L=341]
Description: hypothetical protein NDAI_0C01710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2357.58
//
Query:       CCD23833.1  [L=185]
Description: hypothetical protein NDAI_0C01720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-70  234.9   0.0    4.4e-70  234.7   0.0    1.0  1  PGP_phosphatase  Mitochondrial PGP phosphatase
     0.0016   18.4   0.0     0.0028   17.7   0.0    1.4  1  Hydrolase_like   HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> PGP_phosphatase  Mitochondrial PGP phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.7   0.0   4.9e-74   4.4e-70       2     167 ..       4     165 ..       3     166 .. 0.99

  Alignments for each domain:
  == domain 1  score: 234.7 bits;  conditional E-value: 4.9e-74
  PGP_phosphatase   2 satlavlkllknpslvlPhltvptfrqlpieigkkkektikavvlDKDnclaapkedkvaeeikekleelrevypeksilivSNsaGssddkda 95 
                      satl+v+kll+np+l++P+ltvptf+qlpi++    ++ ika+v+DKDnc+++p++dk++++++ k+e+l+++yp+k +livSNsaGssdd  +
       CCD23833.1   4 SATLNVFKLLYNPRLCMPQLTVPTFNQLPIPL----APAIKAIVIDKDNCISYPHDDKIWPQYNTKWEQLKTQYPGKALLIVSNSAGSSDDIAH 93 
                      799*****************************....9********************************************************* PP

  PGP_phosphatase  96 ekaealekktgipVlrhkekKPgcaeevleyfkerkvveeadeiavvgDRllTdvllanmmGslgvwlrdgv 167
                      ++a++le++tg++Vlrh++kKPgc++e+l++f  +k +e+++e+av+gDRl+Td+++ nmm s+gvw++dgv
       CCD23833.1  94 KEAKILEDRTGVTVLRHSTKKPGCKDEILAHFIDNKIIEHPNEVAVIGDRLFTDIMMSNMMNSYGVWIKDGV 165
                      ***********************************************************************9 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.1e-07    0.0028      13      52 ..     126     165 ..     113     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3.1e-07
                     HHHHH---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSS CS
  Hydrolase_like  13 alevlgsdpeevlmiGDrlatDiagAnnaGwksvLVltGv 52 
                     + +++ ++p+ev +iGDrl tDi + n +   +v ++ Gv
      CCD23833.1 126 IDNKIIEHPNEVAVIGDRLFTDIMMSNMMNSYGVWIKDGV 165
                     55566789**********************9999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1407.27
//
Query:       CCD23834.1  [L=914]
Description: hypothetical protein NDAI_0C01730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-54  183.3   0.0    9.6e-54  182.5   0.0    1.4  1  Sec23_trunk     Sec23/Sec24 trunk domain
    2.2e-18   66.0   0.1    4.9e-18   64.8   0.1    1.7  1  Sec23_helical   Sec23/Sec24 helical domain
      2e-11   44.5   0.2    7.9e-11   42.5   0.0    2.2  3  Sec23_BS        Sec23/Sec24 beta-sandwich domain
    6.1e-11   42.2   3.9    1.3e-10   41.1   2.8    2.1  2  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
     0.0013   18.6   0.0     0.0037   17.1   0.0    1.7  1  Gelsolin        Gelsolin repeat
  ------ inclusion threshold ------
       0.16   12.7   0.0        2.6    8.7   0.0    2.5  2  VWA_2           von Willebrand factor type A domain
       0.18   12.0   0.8       0.53   10.4   0.2    2.1  2  DUF2318         Predicted membrane protein (DUF2318)


Domain annotation for each model (and alignments):
>> Sec23_trunk  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.5   0.0   3.7e-57   9.6e-54       1     239 [.     277     511 ..     277     515 .. 0.95

  Alignments for each domain:
  == domain 1  score: 182.5 bits;  conditional E-value: 3.7e-57
                  SS--EEEEEEE-SHHHHHHTHHHHHHHHHHHHCTTSS.TSTT-EEEEEEESSSEEEEETSTTSSSSEEEEECHTTSCCSSTSSSSSEETTTTHHHHHH CS
  Sec23_trunk   1 pkppvflFviDvsleaikegelkalkeslkqsLdllP.eepralvglitfdsvvhffelkselrqpkelvvsdlqdvflpladrlLvplseseavled 97 
                  p p+++ F+iDvs +a+++g+  a+ e++++ ++++  +++++++g+i++d+ ++f++l+sel+ ++e++v++l+d flp++++l+v++++s++v++d
   CCD23834.1 277 PLPLHYAFLIDVSTHANENGSSLAVLEAVRETIEYIReNQTECKIGIIAYDNKLRFYNLRSELQLAQEYIVTELDDCFLPFYEGLFVKPENSMTVIND 374
                  679**********************************779********************************************************** PP

                  HHHHHHH.HSTT-TTC-----HHHHHHHHHHHHCHCT..S-EEEEEEESS---SSTTTSS-SBTTSCCTSSTTCHHCHSCSSSCHHHHHHHHHHHCTE CS
  Sec23_trunk  98 lLeelpe.mfavtagkrperalgpalkaavellkave..tggkiivfvgslptvgaggklksredeslldidkekaklvkkadkfYkkLakecvkqgi 192
                  +L ++ + + +++++++p +++g+al+aa+ +l++v+  +ggkii+  +slp++g+ g+l  r+d++ +         +k++++fY kL++++  ++i
   CCD23834.1 375 TLAKIGDfIRNDKYNHSPYNCYGSALQAAQLALNIVTgrQGGKIIASLNSLPNIGN-GNLYIRKDDATKR-------TLKCDNEFYVKLSEKLLRSYI 464
                  *******999**************************99******************.9999999887665.......6999***************** PP

                  EEEEEEECSS--SHHHHTHHHHTTT-EEEEETTTCCHHHHHHHHHHH CS
  Sec23_trunk 193 svDlFlfsldyvdlaelkqlaeltgGqvvlydsFsaekdasklkqdl 239
                  svDlF++s+++v++++++  + +t G++ +y++F  +  +     d+
   CCD23834.1 465 SVDLFVTSSAFVEMVSVGRPVLVTNGILKYYPQFRGDAYSTAVAADM 511
                  **********************************9666666665555 PP

>> Sec23_helical  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.1   1.9e-21   4.9e-18       1     101 [.     615     715 ..     615     717 .. 0.97

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 1.9e-21
                    -HHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHHH-------------GGGTTHHHHHHHHHTSTTTS-.-TT--HHHHHHHHHHHHH CS
  Sec23_helical   1 DqeavtvllakqaidkalesgladarealdtslvdllsayrkvgasgsspsqlqlpeslklLPlyilallKspafrg.gnsvpaDervfalsllls 95 
                    Dq+ v+ ++++++++ + + ++ ++r+ +d+++vd+l++yr  +++ +s+sql+lp+slk+LP y+l++ Ks+ +++  +s++ + r+  l ++++
     CCD23834.1 615 DQNSVMRIMINDILRTLGDCDFPKIRQIIDDKIVDILTQYRGLVNG-NSASQLVLPDSLKTLPTYMLCFEKSELMKPnNQSTRGNNRINDLMKYST 709
                    99******************************************87.9999**************************99999************** PP

                    --HHHH CS
  Sec23_helical  96 lpvdql 101
                    l+ +ql
     CCD23834.1 710 LNSAQL 715
                    *99887 PP

>> Sec23_BS  Sec23/Sec24 beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         7   1.8e+04      20      40 ..      65      86 ..      64      93 .. 0.69
   2 !   42.5   0.0   3.1e-14   7.9e-11       1      91 [.     520     599 ..     520     604 .. 0.93
   3 ?   -3.3   0.0       6.2   1.6e+04      44      65 ..     867     890 ..     851     902 .. 0.63

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 7
                ESSSEECS.TBESSEESECSES CS
    Sec23_BS 20 iGncvsls.nvsekeiGeggts 40
                iG +  ++ +vse++ G ++  
  CCD23834.1 65 IGTFAPRHfSVSETVAGATDQY 86
                6777777447899999988873 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 3.1e-14
                 EEEEEEEEEE-TTEEEEEEESSSEECSTBESSEESECSESEEEEEEEETT--EEEEEEESSBTCTTSEEEEEEEEEEEETTSEEEEEEEEE CS
    Sec23_BS   1 gfnatlevrtSkelkvsgliGncvslsnvsekeiGeggtsewklcsldpdstlavyfdideklksgkqayiQfatlYthssgerrlRVttv 91 
                 g++a ++vr+S +l v++++ + v  +         +      +++l++d+t+ v +++deklk g+++ +Q+a+lYt+ +g r++R +++
  CCD23834.1 520 GYQALMKVRCSAGLSVNQYYSESVDYT---------DRD--PMIPVLTRDTTIDVLLKYDEKLKVGTDMSFQTAVLYTDLNGIRKIRSINC 599
                 79************************9.........333..59********************************************9987 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 6.2
                 EEEEETT--EEEEEEE..SSBTCT CS
    Sec23_BS  44 lcsldpdstlavyfdi..deklks 65 
                 +  +d++s++ +++    ++kl++
  CCD23834.1 867 VNMVDSTSNYFITLHSkiQAKLNK 890
                 556777777777775422444443 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.3   3.4e+03      22      37 ..     119     134 ..     110     134 .. 0.80
   2 !   41.1   2.8   5.1e-14   1.3e-10       1      38 [.     203     239 ..     203     240 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.3
  zf-Sec23_Sec24  22 krwiCnfCnhknevpp 37 
                     k   C f  +kn vpp
      CCD23834.1 119 KYLSCVFETTKNSVPP 134
                     667899999*****97 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 5.1e-14
  zf-Sec23_Sec24   1 PirCrrCraylNpfckidfggkrwiCnfCnhknevppe 38 
                     P+rC+rCray Np ++++++ ++ +Cn+C+ + ++p+e
      CCD23834.1 203 PLRCKRCRAYANPGFHFQYD-SKVVCNICKVEMQIPNE 239
                     99******************.9**************86 PP

>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-06    0.0037      13      53 ..     762     804 ..     760     822 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.5e-06
                 GGEETTSEEEEEESSEEEEEEHTT..SHHHHHHHHHHHHHHHH CS
    Gelsolin  13 sslesgdcyLLdngftiflWiGke..ssqeeknfaadlaaeld 53 
                 ++l +g+cy +  g t++lW++ +   +++e+++++d +  ++
  CCD23834.1 762 GNLLDGGCYFIFDGETVYLWFNHNtnKMLLEDLLGVDPTLNIN 804
                 67899*******************************9988887 PP

>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0     0.001       2.6       2      49 ..     283     330 ..     282     350 .. 0.88
   2 ?    0.7   0.0      0.32   8.3e+02      57      93 ..     374     411 ..     363     420 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.001
       VWA_2   2 vfvlDtSgSmrngdygptrleaakdaveallkslpgdrvglvtfsdgp 49 
                  f++D+S   +++  + + lea+++ +e + +++ + ++g+++++++ 
  CCD23834.1 283 AFLIDVSTHANENGSSLAVLEAVRETIEYIRENQTECKIGIIAYDNKL 330
                 59***********989999999999998888888899*******9975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.32
       VWA_2  57 kdkakilnalrnleak.gggtnlaaaLqlarkalkkrr 93 
                 +  aki +++rn ++  +   ++++aLq a+ al+  +
  CCD23834.1 374 DTLAKIGDFIRNDKYNhSPYNCYGSALQAAQLALNIVT 411
                 556677777888777778889**********9997554 PP

>> DUF2318  Predicted membrane protein (DUF2318)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00021      0.53      37      64 ..     206     237 ..     200     246 .. 0.87
   2 ?   -3.1   0.0       3.3   8.6e+03      60      76 ..     800     815 ..     798     827 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00021
     DUF2318  37 CevC...ekkgYv.qegeelvCknCgvrfald 64 
                 C+ C    + g++ q ++++vC+ C+v+++++
  CCD23834.1 206 CKRCrayANPGFHfQYDSKVVCNICKVEMQIP 237
                 8888777888999899*************986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.3
     DUF2318  60 rfaldsigekkGGCnpi 76 
                 ++++++i    GGC p 
  CCD23834.1 800 TLNINQIT-LFGGCLPE 815
                 57889999.99***885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 6721.10
//
Query:       CCD23835.1  [L=607]
Description: hypothetical protein NDAI_0C01740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.2e-165  549.7  35.6   6.5e-165  549.4  35.6    1.1  1  Sugar_tr  Sugar (and other) transporter
    1.5e-33  116.2  41.1    8.8e-31  107.1  26.2    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  549.4  35.6  7.3e-169  6.5e-165       1     452 []      86     546 ..      86     546 .. 0.99

  Alignments for each domain:
  == domain 1  score: 549.4 bits;  conditional E-value: 7.3e-169
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++l++++gg++fg+dtg+i++f+++++++++fg+++s++s++ s+v++gl+vsif+vGa+iG++++   gd++GR+ +l++++ ++ +g+v+q+a+   
  CCD23835.1  86 CCLMVSFGGFIFGWDTGTISGFVNQTDYVRRFGQTRSNGSHYLSNVRMGLLVSIFNVGAAIGGVMLARTGDMWGRRLGLITVVSIYTVGIVIQIASI-- 182
                 69***********************************************************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  ++ ++++gR+++G+gvG++ vl+Pm+isE+Apk+lRg+lvs+yql+it+Gi++++++++g++++sn+++wr++lgl++++al+++ ++l++PESPryl
  CCD23835.1 183 DKWFQYFIGRIISGLGVGGIAVLAPMLISEVAPKQLRGTLVSCYQLMITLGIFLGYCSNFGTKNYSNSVQWRVPLGLSFAWALFMIGGMLMVPESPRYL 281
                 56************************************************************************************************* PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksllv 292
                 ve+g+ e+ak++l+k +++e +++ +  e++++ea++e+e    +a w+el++ +  +++r+++g+++q++qqltG n+++yy++tif+ +gl++s+++
  CCD23835.1 282 VEVGRLEDAKRSLSKTNKVEVNSPFVTLEMEKFEASVEAErlagTANWNELVTGRPaMFKRTVMGMMIQSLQQLTGANYFFYYGTTIFRAVGLEDSFET 380
                 **************************************99**************999****************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS........CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvR 384
                 +i++gvvnfv+tf+a+++vd+ GRRt+ll+G++gm++c v+++  +v+ l+++++     k+a++++ivf ++fi++fa++w+p+ +v+ sE++p++vR
  CCD23835.1 381 SIVLGVVNFVSTFFALYFVDHYGRRTCLLWGCVGMICCYVVYAsvGVTRLWPNGQsqpssKGAGNCMIVFACFFIFCFATTWAPIAYVVTSEIYPLRVR 479
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 385 skalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +ka+++a+a+n ++ flis+++p+it+ai+ +y+++vf+g++v++++fvff vpetkg+tlee++e++
  CCD23835.1 480 GKAISVATACNCMWGFLISFFTPFITGAIN-FYYGYVFMGCMVFAYFFVFFLVPETKGLTLEEVNEMY 546
                 ******************************.**********************************997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1  26.2   9.8e-35   8.8e-31       2     352 ..      91     497 ..      90     498 .. 0.81
   2 !   23.5   6.9   2.6e-09   2.3e-05      89     197 ..     448     559 ..     447     590 .. 0.69

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 9.8e-35
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg.........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwll 88 
                 ++++f+ +++ ++++ ++ +  + + +g         +s   +gll++++ +gaa++ + l+r +d +Grr  l++ + ++ +g +++ +a    ++  
  CCD23835.1  91 SFGGFIFGWDTGTISGFVNQtDYVRRFGqtrsngshyLSNVRMGLLVSIFNVGAAIGGVMLARTGDMWGRRLGLITVVSIYTVG-IVIQIAsiDKWFQY 188
                 799*****************9999999988877777778888******************************************.555544446677** PP

       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrks 183
                 +++r+++Glg g+++ ++  li++++pk+ rg  ++++++++ lG+ lg   + + + +++    Wr++  +  + +l+++  ++l +pe+p+    + 
  CCD23835.1 189 FIGRIISGLGVGGIAVLAPMLISEVAPKQLRGTLVSCYQLMITLGIFLG-YCSNFGTKNYSnsvqWRVPLGLSFAWALFMIG-GMLMVPESPRYLVEVG 285
                 *************************************************.778888888888999****9999999999955.4477777777777777 PP

       MFS_1 184 pkeee............................kgtgpaplvp.......awkallkdpvlw......illialllfffgfsglltllplylqevlgls 241
                   e+                             +                 w +l++ ++ +       ++i +l   +g ++++++ +++     gl 
  CCD23835.1 286 RLEDAkrslsktnkvevnspfvtlemekfeasvE--------AerlagtaNWNELVTGRPAMfkrtvmGMMIQSLQQLTGANYFFYYGTTI-FRAVGLE 375
                 7777687777777665666666665555555441........0455555545555555544222233347777777777777788888885.7777777 PP

       MFS_1 242 .glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..........ssavllllvlvl..iGf.glgfvfpsllalas 326
                  + ++++++l+++ +v+    ++a +++d++grr+ ll+++++++++++ +a ++vt          ss+ ++ +++v+  + + ++++++++++++++
  CCD23835.1 376 dS-FETSIVLGVVNFVS---TFFALYFVDHYGRRTCLLWGCVGMICCYVVYASVGVTrlwpngqsqpSSKGAGNCMIVFacFFIfCFATTWAPIAYVVT 470
                 44.99999999999999...999****************************************999977777777666655555589988766666665 PP

       MFS_1 327 dla.ppeeagtasglfntagslggalg 352
                 + + p + +g+a+++++ +++  g+l 
  CCD23835.1 471 SEIyPLRVRGKAISVATACNCMWGFLI 497
                 555499***************999985 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 2.6e-09
       MFS_1  89 lvlrvlqGlgag.alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspke 186
                 +v+ ++  ++ + + +p++++++++++p + rg+ai++++a++ +   l   + ++++ ++++ + +++++ + +  f    +++++++++  + +++ 
  CCD23835.1 448 IVFACFFIFCFAtTWAPIAYVVTSEIYPLRVRGKAISVATACNCMWGFLISFFTPFITGAINFYYGYVFMGCMVFAYFF---VFFLVPETKGLTLEEVN 543
                 455555555554055577788899*********************999999*************************977...66666666666665555 PP

       MFS_1 187 ee.....kgtgpaplv 197
                 e        ++ a++v
  CCD23835.1 544 EMyeegvLPWKSASWV 559
                 5444444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1057  (0.0589548); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.38
# Mc/sec: 4770.43
//
Query:       CCD23836.1  [L=576]
Description: hypothetical protein NDAI_0C01750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-171  571.0  33.2     2e-171  570.8  33.2    1.0  1  Sugar_tr  Sugar (and other) transporter
    4.2e-25   88.4  22.3    4.2e-25   88.4  22.3    2.1  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  570.8  33.2  2.2e-175    2e-171       1     452 []      74     534 ..      74     534 .. 0.99

  Alignments for each domain:
  == domain 1  score: 570.8 bits;  conditional E-value: 2.2e-175
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 +++++a+gg++fg+dtg+i++f+++++f+++fg++++++s++ s+v++gl+vsif++G++iG+++++++gd++GRk +l+i++v++v+g+++q+a+   
  CCD23836.1  74 MCIMIAFGGFVFGWDTGTISGFVAQTDFLRRFGQKHHDGSHYLSKVRMGLVVSIFNIGCAIGGIILSKAGDMYGRKMGLIIVVVIYVVGIIIQIASV-- 170
                 69***********************************************************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                 ++++++++gR+++G+gvG++ vl+Pm+isE++pk+lRg+lvs+yql+it+Gi++++++++g++++sn+++wr++lgl++++a++++ +++ +PESPryl
  CCD23836.1 171 KAWYQYFIGRIISGMGVGGIAVLSPMLISEVSPKHLRGTLVSCYQLMITLGIFLGYCTNYGTKNYSNSVQWRVPLGLCFAWAIFMIGGMTKVPESPRYL 269
                 78************************************************************************************************* PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksllv 292
                 +ekg  eeak+++a ++++  +d+++  e++ l+ ++e+e    +asw+el+s+ t ++qrl++g++lq++qqltG n+++yy++t+f+ +g+++s+++
  CCD23836.1 270 IEKGLVEEAKRSIALSNKVGVDDPAVMTEVENLQSGVEAErlagNASWGELFSTNTkIFQRLIMGCMLQSLQQLTGDNYFFYYGTTVFKAVGMEDSFET 368
                 ***************************************9**************99******************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS........CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvR 384
                 +i++g+vnf++tfv+iflv+r GRRt+ll+Gaa+m++c+v+++  +v+ l+++++     k+a++++i f+++++++fa++w+p+p+v+ sE+fp++v+
  CCD23836.1 369 SIVLGIVNFASTFVGIFLVERYGRRTCLLWGAATMTACMVVFAsvGVTRLWPNGKdngssKGAGNCMICFTCFYLFCFATTWAPIPFVVNSETFPLRVK 467
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 385 skalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 sk++++a a+nwl+ fli++++p+i +ai  +y+++vf+g++++++++vf+f+petkg++lee+++++
  CCD23836.1 468 SKCMSVAQACNWLWGFLIGFFTPFISGAID-FYYGYVFMGCLCFSYFYVFLFIPETKGLSLEEVNTMW 534
                 ******************************.***********************************99 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4  22.3   4.7e-29   4.2e-25       1     351 [.      78     484 ..      78     486 .. 0.79
   2 !    9.7   3.3   3.9e-05      0.35     106     185 ..     454     530 ..     451     575 .. 0.73

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 4.7e-29
       MFS_1   1 lllaaflsalarsilgpalpl.alaedlg.........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.l 87 
                 +++++f+ +++ ++++ ++ +    + +g         +s+  +gl+++++ +g+a++ ++l+  +d +Gr+  l++ ++++++g +++ +a    w  
  CCD23836.1  78 IAFGGFVFGWDTGTISGFVAQtDFLRRFGqkhhdgshyLSKVRMGLVVSIFNIGCAIGGIILSKAGDMYGRKMGLIIVVVIYVVG-IIIQIAsVKAWyQ 175
                 689*****************99999999999999999999999******************************************.6666655556669 PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrk 182
                  +++r+++G+g g+++ ++  li++++pk  rg  ++++++++ lG+ lg+    + + +++    Wr++  ++ + +++++  ++  +pe+p+    k
  CCD23836.1 176 YFIGRIISGMGVGGIAVLSPMLISEVSPKHLRGTLVSCYQLMITLGIFLGY-CTNYGTKNYSnsvqWRVPLGLCFAWAIFMIG-GMTKVPESPRYLIEK 272
                 **************************************************5.45555556667888**999999999999944.336666666666666 PP

       MFS_1 183 spkeee............................kgtgpaplvp.......awkallkdpvlwillialllfffgfsg........lltllplylqevl 238
                   +ee                             +                 w++l++ +    ++  l+++++  s+        ++++ ++   +  
  CCD23836.1 273 GLVEEAkrsialsnkvgvddpavmtevenlqsgvE--------AerlagnaSWGELFSTNTK--IFQRLIMGCMLQSLqqltgdnyFFYYGTTV-FKAV 360
                 66666588888888887787777777776654431........0333456668888888833..333333333333333345666588888885.8999 PP

       MFS_1 239 gls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..........ssavllllvlvl...iGfglgfvfpslla 323
                 g+  + ++++++l+++ +++    +++ +l+ r+grr+ ll++ + ++++ + +a ++vt          ss+ ++ +++ +   + f+++++++++  
  CCD23836.1 361 GMEdS-FETSIVLGIVNFAS---TFVGIFLVERYGRRTCLLWGAATMTACMVVFASVGVTrlwpngkdngSSKGAGNCMICFtcfYLFCFATTWAPIPF 455
                 99955.88888888888887...88899999************************************99966666666444445466699998766666 PP

       MFS_1 324 lasdla.ppeeagtasglfntagslggal 351
                 ++++ + p +   + +++++ ++ l g+l
  CCD23836.1 456 VVNSETfPLRVKSKCMSVAQACNWLWGFL 484
                 665544499*************9999988 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 3.9e-05
       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspk 185
                   ++ ++ fp + +++ +++++a++ l   l   + ++++ ++ + + +++++ +++  f    ++l+ ++++    +++
  CCD23836.1 454 PFVVNSETFPLRVKSKCMSVAQACNWLWGFLIGFFTPFISGAIDFYYGYVFMGCLCFSYFY---VFLFIPETKGLSLEEV 530
                 56778899999999*********98887777779************************977...5554544444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4380.72
//
Query:       CCD23837.1  [L=656]
Description: hypothetical protein NDAI_0C01760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.4e-123  411.0   5.6   4.3e-123  410.7   5.6    1.1  1  tRNA-synt_1d     tRNA synthetases class I (R)
    8.8e-30  103.3   0.5    2.1e-28   98.9   0.1    2.5  2  DALR_1           DALR anticodon binding domain
    1.1e-07   32.4   0.0    7.9e-07   29.6   0.0    2.5  2  Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
  ------ inclusion threshold ------
      0.096   12.4   0.8       0.24   11.1   0.8    1.7  1  BRCA2            BRCA2 repeat


Domain annotation for each model (and alignments):
>> tRNA-synt_1d  tRNA synthetases class I (R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.7   5.6  9.6e-127  4.3e-123       2     349 .]     173     524 ..     172     524 .. 0.97

  Alignments for each domain:
  == domain 1  score: 410.7 bits;  conditional E-value: 9.6e-127
                   HHHHHCCTTTT..---SST-EEEEE----BTTS--BHHHHHHHHHHHHHHHHHHHCT-EEEEEE--B-SSTCHHHHHHHHHHHTTTTTTS-----SC CS
  tRNA-synt_1d   2 vssiLvqkrkl.qkksrekkkvvvdfssPniakemhvGhLrstiiGdavsrlleflGydvirlnhvGDWGtqfGlLiaylekkqdekllqeqelqdL 97 
                   ++++L +k ++ + +++++kkv+++fssPniak++h+GhLrstiiG+++++l+e lG+dvir+n++GDWG+qfGlL++++e+++ e++l + ++ +L
    CCD23837.1 173 IPDVLNRKDEYgSCNLGDNKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWDVIRMNYLGDWGKQFGLLAIGFERYGSEEALAKDPIHHL 269
                   6788999999978999********************************************************************************* PP

                   CCHHHHHHHHCCCSHC.......CCHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHCT---EC.--CC.CCCCCHHHHHHHHHCTT-EEE CS
  tRNA-synt_1d  98 eafykeakkdydeeei.......faerarnyvvkLqsgdedirklwkllvditrtelqklydrldvtlie.rGes.lykeslneivkelkkkglvke 185
                   +++y+ ++kd +ee          +++ar+y++++++gde   k+wk+  +++ +++  +y+rl++      Ges ++kes++++++++k+kgl +e
    CCD23837.1 270 FEVYVRINKDIEEEGDslpleesTNGKAREYFKRMEDGDEAALKIWKRFRELSIEKYIDTYARLNIQYDVySGESqVSKESMEKALQIFKEKGLTHE 366
                   ***********99866777777799****************************************9974459************************* PP

                   CTTCEEEEECCCTSSCCE.ECC-TTS-B-HHHHHHHHHHHHHHTT--SEEEEEEECCCHHHHHHHHHHHHCTTSSTT.TSEEEEEEE--EE-TTSSB CS
  tRNA-synt_1d 186 sdGalvvfldefgkrlgv.vvqksDGgylytttDiaaakerkeelkadkvlyvidsrqslhlqqiflilkkigyvpe.skdlehanfGmvlgkdkkk 280
                   + Ga +++l++f k+lg  +vqksDG++ly+t+D++aa +r+e+ ++dk++yvi s+q+lh  q+f ilk++g+  e + +l+h nfGmv     ++
    CCD23837.1 367 DKGAVLIDLTKFQKKLGKvIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGF--EwANRLQHVNFGMV-----QG 456
                   *****************9899*****************************************************..669***********.....** PP

                   SBCSSSTC-BHHHHHHHHHHHHHHHHCCCCCCTS-CCCCHCHHHHHHHHHHHHCCCCTS-TTS-EE--H CS
  tRNA-synt_1d 281 fktrkGetvkLadlLdealeralqlikeknkdkvlqadelekvaeavgvgaikyaDlsknrindyifdw 349
                   ++trkG +v+L+++L+e+ e+  + ++ kn+ k +q +++e+va++vg++a+ ++D++++rin+y+f+w
    CCD23837.1 457 MSTRKGTVVFLDNILEETKEKMHD-VMKKNEVKYSQIENPEEVADLVGISAVMIQDMQSKRINNYEFKW 524
                   *********************999.9******************************************9 PP

>> DALR_1  DALR anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.05   2.2e+02      28      55 ..     354     388 ..     335     415 .. 0.72
   2 !   98.9   0.1   4.8e-32   2.1e-28       1     119 []     538     656 .]     538     656 .] 0.95

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.05
                 CC.......S-SHHHHHHHHHHHTHHHHHHHHHHH CS
      DALR_1  28 al.......leeeeekeLlkalaqfpevleeaaee 55 
                 al       l++e++ ++l  l +f++ l +++ +
  CCD23837.1 354 ALqifkekgLTHEDKGAVLIDLTKFQKKLGKVIVQ 388
                 2223444568****************999888755 PP

  == domain 2  score: 98.9 bits;  conditional E-value: 4.8e-32
                 HHHHHHHHHHHHHHTTCTTCCCCHCCHCC.S-SHHHHHHHHHHHTHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHCTSTTSCTHHH.HHHHHHHH CS
      DALR_1   1 vqyahaRiksilrkaeeegekleeealal.leeeeekeLlkalaqfpevleeaaeelephklaeylyeLaatfhkfYnkervlkeeeeelaaaRLaLvk 98 
                 +qyah+R++s+ r+a e ++++  +a+++ l+e++ + L++ l q+p+vl +a+++ ep ++++yl++L ++++++Y+  +v ++ ee   +aRLaL  
  CCD23837.1 538 LQYAHSRLRSVERNASEITPEKWLKADFSlLTEPAALLLVRLLGQYPDVLRNAIKTNEPTTVVTYLFKLTHQVSSCYDVLWVAGQTEELA-TARLALYA 635
                 6*****************9999888888846666***************************************************99966.******** PP

                 HHHHHHHHHHHHTT----S-- CS
      DALR_1  99 avrqvLangLdlLGieapekm 119
                 a+rqvL ng++lLG++++++m
  CCD23837.1 636 AARQVLYNGMRLLGLTPVDRM 656
                 ********************9 PP

>> Arg_tRNA_synt_N  Arginyl tRNA synthetase N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.8e-10   7.9e-07       3      85 .]      84     163 ..      82     163 .. 0.95
   2 ?   -1.6   0.0      0.92   4.1e+03      40      63 ..     571     594 ..     549     599 .. 0.83

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.8e-10
                      HHHHHHHHHHHHHSS-HHHHGGG-E-.SSGGG-SEEEEGGGG--TT-..-HHHHHHHHHHT---TTTEEEEEEETT.EEEEEE CS
  Arg_tRNA_synt_N   3 lkeaiaealkkaagadleeeeiviekpknpkfGDyatnvamqlakklkknPreiAeeiaeklekseiiekvevagpGFiNffL 85 
                      +++ i+++l+k++g d++ + +++e ++  + GD+ ++v  +  +  + +P+++A+e+aek++  e  ++ve+ ++ F++ff+
       CCD23837.1  84 MRNYISQELSKISGVDEALIFPALEWTNTLERGDLLIPV--PRLRVKGAKPNDLAAEWAEKFPCGEFLDRVEANKA-FLQFFF 163
                      5789*********99**********99***********8..78888899**************************9.****96 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.92
                      EGGGG--TT-..-HHHHHHHHHHT CS
  Arg_tRNA_synt_N  40 nvamqlakklkknPreiAeeiaek 63 
                      ++a+ l + l++ P  + ++i+ +
       CCD23837.1 571 PAALLLVRLLGQYPDVLRNAIKTN 594
                      789999********9999999875 PP

>> BRCA2  BRCA2 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.8   5.3e-05      0.24      16      32 ..     345     361 ..     345     361 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.3e-05
       BRCA2  16 rVSkesLqKAkklFsei 32 
                 +VSkes +KA ++F+e+
  CCD23837.1 345 QVSKESMEKALQIFKEK 361
                 7**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.39
# Mc/sec: 5037.95
//
Query:       CCD23838.1  [L=275]
Description: hypothetical protein NDAI_0C01770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-19   70.4   4.6    1.6e-19   70.4   4.6    1.7  2  ING         Inhibitor of growth proteins N-terminal histone-b
    2.4e-06   27.3   8.4    4.7e-06   26.4   8.4    1.5  1  PHD         PHD-finger
     0.0059   16.8   1.1      0.014   15.6   1.1    1.7  1  zf-HC5HC2H  PHD-like zinc-binding domain
  ------ inclusion threshold ------
       0.05   13.5   3.9       0.12   12.3   3.9    1.6  1  STAT_alpha  STAT protein, all-alpha domain
      0.058   13.4   0.0       0.16   12.0   0.0    1.8  1  Attractin   Attractin family
        1.1   10.5   5.5        0.6   11.2   1.9    2.1  2  DUF4749     Domain of unknown function (DUF4749)


Domain annotation for each model (and alignments):
>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   4.6   5.3e-23   1.6e-19       1     100 [.       6     110 ..       6     111 .. 0.98
   2 ?   -2.4   0.1       2.5   7.3e+03      68      68 ..     178     178 ..     152     215 .. 0.58

  Alignments for each domain:
  == domain 1  score: 70.4 bits;  conditional E-value: 5.3e-23
                 HHHHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH.TS..S-HHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING   1 yLedyldsvenLPlelqrnltelreiDakvqellkei...dskiekfl.kngslqknekeeels.riqeelkeaqelldeKiqlaqqaldlvdkhlrrL 94 
                 +Le+++++v+nL++e++  ++e+   D k  e +k++   ds+i+kf+ ++gs++ +++e++l+ +i+e +k+++el++eK   a++al lv++hl++L
  CCD23838.1   6 VLEQTIQDVSNLQAEFRFIYEEISSADSKALEEKKKYmqkDSQIHKFIkQHGSTTVQPDEDKLYkEINEGMKACEELQNEKSIFANTALFLVARHLSKL 104
                 69**************************************************************9********************************** PP

                 HHCTXX CS
         ING  95 dqdlek 100
                 ++++++
  CCD23838.1 105 EKNIAL 110
                 **9986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.5
                 H CS
         ING  68 e 68 
                  
  CCD23838.1 178 L 178
                 1 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   8.4   1.6e-09   4.7e-06       1      51 [.     217     263 ..     217     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.6e-09
                 SBTTTTSTTSTTSCEEEET..TTS.CEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkkksdeeeelvqCd..gCk.rwfHqkClkppleseekpegewlCekCke 51 
                 +C +C++     +e+v Cd  +Ck +wfH  C+++++     p+g w+C+ C++
  CCD23838.1 217 YC-FCQN--VSYGEMVACDgpNCKyEWFHYGCVNLKEP----PKGTWYCPDCRQ 263
                 69.***9..779*******555*868**********55....8889******97 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.1   4.8e-06     0.014      26      67 ..     205     247 ..     181     265 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.8e-06
  zf-HC5HC2H  26 dvekikkerkklkCylCkkkvGaciqCskkkCk.kafHvtCak 67 
                 + ++ + e k+l C + + ++G ++ C+ ++Ck + fH+ C  
  CCD23838.1 205 NSNDNEDEDKTLYCFCQNVSYGEMVACDGPNCKyEWFHYGCVN 247
                 455566677778886666779***********8468*****86 PP

>> STAT_alpha  STAT protein, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.9     4e-05      0.12      18      91 ..       7      84 ..       4      87 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4e-05
  STAT_alpha 18 teqdirkLedeqeeFdfqyqelqkleqeraesekkelkkqkellqqmlna.....LdqkRkelvdklkellnlleslqe 91
                +eq+i+++ ++q eF f y+e+++  +++a  ekk+++++  ++++ +++     ++    +l ++++e ++ +e+lq+
  CCD23838.1  7 LEQTIQDVSNLQAEFRFIYEEISSA-DSKALEEKKKYMQKDSQIHKFIKQhgsttVQPDEDKLYKEINEGMKACEELQN 84
                799**********************.66666667779999999999999999999999999999999999999999997 PP

>> Attractin  Attractin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.4e-05      0.16      19      55 .]      27      64 ..      13      64 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.4e-05
   Attractin 19 dAssCda.liEECktslvErCqnqeaesdessttlrPe 55
                + ss d+  +EE k  ++   q +++  + +stt++P+
  CCD23838.1 27 EISSADSkALEEKKKYMQKDSQIHKFIKQHGSTTVQPD 64
                3444443258**************************96 PP

>> DUF4749  Domain of unknown function (DUF4749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.9    0.0002       0.6      17      89 ..       9      83 ..       7      88 .. 0.71
   2 ?    0.1   0.1      0.63   1.9e+03      71      87 ..     157     178 ..     113     199 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0002
     DUF4749 17 eniqdtlegqaevlaggksevsepk.slpskkpvvdkeseVykmlqeeeeekeePrqsksfrvlqe.ileteeaq 89
                ++iqd+ + qae     ++ +s+++ +l +kk++++k+s+++k+++++     +P+  k ++ + e + + ee+q
  CCD23838.1  9 QTIQDVSNLQAEFRFIYEEISSADSkALEEKKKYMQKDSQIHKFIKQHGSTTVQPDEDKLYKEINEgMKACEELQ 83
                67888666666665554444444445899**************************99998885554144445454 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.63
     DUF4749  71 r.....qsksfrvlqeiletee 87 
                 +     qs++  v   + ete 
  CCD23838.1 157 SlkkkkQSRTASVQRGQKETEL 178
                 3444447777666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1913.54
//
Query:       CCD23839.1  [L=211]
Description: hypothetical protein NDAI_0C01780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-41  139.3   0.0      1e-40  139.0   0.0    1.0  1  Gar1      Gar1/Naf1 RNA binding region


Domain annotation for each model (and alignments):
>> Gar1  Gar1/Naf1 RNA binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   0.0   5.8e-45     1e-40      10     124 ..      26     127 ..      17     145 .. 0.87

  Alignments for each domain:
  == domain 1  score: 139.0 bits;  conditional E-value: 5.8e-45
                 TT----TTS-EEEEEEEEEEETTEEEEEE---S--B--BTT-EEEETT--EEEE--EEES-SSS-EEEEE--GGHHHHHHHTTTTSEEEEE-X....XX CS
        Gar1  10 edieigppeevleiGtvssivenevviksttsgekkvldfnsilflenktqiGkVdEifGpvnepyysVklnsseeikaksfkvgdkvyiapd..lple 106
                 + i++gpp++vle+G++ + +en++v++s+++   k+++fn++++lenktqiGkVdEi+Gp+ne+y+++k++  e+++aksfk+gdk+yi pd  lp+e
  CCD23839.1  26 RPIQQGPPDSVLEMGSFLHECENDIVCRSINT---KIPYFNAPIYLENKTQIGKVDEILGPLNEVYFTIKCS--EGVQAKSFKEGDKFYIGPDklLPIE 119
                 6799**************************44...*************************************..************************* PP

                 XXXXXXXXXXXXXXXXXX CS
        Gar1 107 rfllteelkkkkgpdasn 124
                 rfl          p+++ 
  CCD23839.1 120 RFL----------PKPKV 127
                 **9..........44443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1651.54
//
Query:       CCD23840.1  [L=1225]
Description: hypothetical protein NDAI_0C01790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00096   19.2   2.4      0.051   13.6   2.4    3.4  1  Xpo1      Exportin 1-like protein
  ------ inclusion threshold ------
      0.089   13.1   1.4       0.47   10.7   0.3    2.7  2  NES_C_h   Nicking enzyme C-terminal middle helical domain


Domain annotation for each model (and alignments):
>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   2.4   5.7e-06     0.051       1     136 [.     102     274 ..     102     289 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.7e-06
                 THHHHHHHHHHHHHHHHHHT................TTTSTTHHHHHHHHHCT.HHHHHHHHHHHHHHHHHHHTSHTTTSCHHHHHHHHHHHHHH.HH. CS
        Xpo1   1 pkflrnklaealaelflqey................pnnWpsffddllsllssspsglelllriLkvlpeEiadfsrskleqerrndlkdllrsn.vq. 81 
                 p++++ kla++ +e +++ +                  +W ++ +dl +l s+s++  el l i+++l e+++    +++   +r  + + l++  v+ 
  CCD23840.1 102 PRYIKEKLALLWVEVAKRTWgellrggdeqitetvmETSWCNMDHDLSDLWSMSEASRELSLIIFRILFEDVF--LLEDMVMLKRMTILQPLCVMlVSp 198
                 689*******************************999***********************************8..458999999999999999998551 PP

                 .HHHHHHHHHHHHHHHCC....................HHHHHHHHHHHHHHHHTTTS-HHHHHTSCHHHHHHHHC CS
        Xpo1  82 .kilelllqileqsqskk....................qsselveavLkclsswvswidiglivnnpllnllfqlL 136
                  +++   ++  e+++  k                    ++se v   L++l+ +++w   + i+++++l+ lf  +
  CCD23840.1 199 iDVFAKKYKFTEKWMLFKwgqtgwfqlwvkelnealngSNSEYVIRLLETLKTCLNWPLSDVIIDSDILSSLFGCF 274
                 25666667777888776699999**********************************************9999766 PP

>> NES_C_h  Nicking enzyme C-terminal middle helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.34     3e+03      73      95 ..     423     445 ..     412     448 .. 0.75
   2 ?   10.7   0.3   5.3e-05      0.47      22      88 ..    1139    1207 ..    1134    1218 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.34
     NES_C_h  73 keadrlveklYpelDieeltkae 95 
                 ++ d  v kl+ ++D+++ t+ +
  CCD23840.1 423 EQIDNHVSKLFSDVDFQSKTEFQ 445
                 4578999********99988755 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5.3e-05
     NES_C_h   22 nlesieekkrm......LknWknStlikkavgedktkqleeiekqeelleeAdellnkeadrlveklYpelDi 88  
                  nl+++++ k +       ++W + +  k++v++d+  +l    ++++ le+ d +l++ a+rlv+k  p+ D+
  CCD23840.1 1139 NLKEVDDYKAQrllmydFFDWIRTVNGKNDVNDDESLAL----HEKKRLERRDAVLKRAAERLVKKNKPNADV 1207
                  66666665543222222489*************965555....57899*********************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.23s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 8650.04
//
Query:       CCD23841.1  [L=294]
Description: hypothetical protein NDAI_0C01800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-26   93.2   0.8    2.2e-26   93.2   0.8    1.5  2  Brix      Brix domain
  ------ inclusion threshold ------
      0.021   14.6   5.5      0.038   13.8   5.5    1.4  1  Pex19     Pex19 protein family


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2      0.72   6.4e+03      27      27 ..      35      35 ..       9      71 .. 0.50
   2 !   93.2   0.8   2.5e-30   2.2e-26      12     192 ..     110     267 ..     101     268 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.72
                E CS
        Brix 27 l 27
                +
  CCD23841.1 35 Q 35
                1 PP

  == domain 2  score: 93.2 bits;  conditional E-value: 2.5e-30
                 HHHHHHHCTTSEEEEEEECT.-TTTHHHHHHH...-HHHHHHHH..HCTCSEEEEEE..SSTTEEEEEEEEECECTGGGSTTTSTS-TT---EEEEES. CS
        Brix  12 lkdlrslmkphtasflkrns.nklkdlvelag...vthlellse..kndcslfvfelskkrPngptlefkvenyslmkdlkkakktefgsrPllvfngk 104
                 ++ l  ++++  ++f kr+  +k+k++v +++   +t++++++e  k+ ++l +++l    P+gp+++fk+++y+  k++ ++ +    + P l++n  
  CCD23841.1 110 ANVLIEVLPN--VTFVKRKYgYKMKEIVDICNkrnFTDMVIINEdkKKVTGLTFIHL----PEGPSFYFKLSSYVEVKKIVGH-GRPTSHIPELILN-- 199
                 5566777855..5666766669***********************77777*******....**********************.77779********.. PP

                 HHH.....HHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTTECEEEE.E.EEEEEE..STTTTECT..T..EEEEEEESEEEEEEEE CS
        Brix 105 enf.....kllksllqdlFrvpkislkspklsglrrvvlftaaenqetdktisfR.h.YaiklkksgkklpnlekekkerveLeEiGPrfdLklr 192
                  nf     k++ +l+q++F  p    ++p++ ++r+v++++   nq+ d +i+fR h Y ++         n+e     +v L+E+GP+f+Lkl 
  CCD23841.1 200 -NFqtrlgKTVGKLFQSIF--P----NDPEF-EGRQVITLH---NQR-D-YIFFRrHrYVFR---------NEE-----KVGLQELGPQFTLKLK 267
                 .999888999999999999..7....44689.*********...888.7.8***96579996.........544.....9*************96 PP

>> Pex19  Pex19 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   5.5   4.3e-06     0.038      27     107 ..       8      85 ..       1      93 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.3e-06
       Pex19  27 eeaeedfeellkqleeaaeaaaeaksaeasssaaes.kaeeesfqdiikkTlerLkesgdkvdaaaeseeknsddllaqlLk 107
                    +++ ++l+++l++++++++++ +++ +++++e+ + +e+  ++ + kT+++++  ++++++ +    ++++d+l q ++
  CCD23841.1   8 IRNKQKRQQLFAELKDQKNKERHTMRRQRAKEERENpELKEKRLKENVTKTIDNMRVFDETINQPI----EGDEDDLLQFFN 85 
                 45788899999999998888887777777666666669999*************************....666666767665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1873  (0.104468); expected 358.6 (0.02)
Passed bias filter:                      696  (0.0388198); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.21s 00:00:00.74 Elapsed: 00:00:00.37
# Mc/sec: 2387.31
//
Query:       CCD23842.1  [L=130]
Description: hypothetical protein NDAI_0C01810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-17   63.0   0.2    3.1e-17   62.4   0.2    1.2  1  SBDS      Shwachman-Bodian-Diamond syndrome (SBDS) protein


Domain annotation for each model (and alignments):
>> SBDS  Shwachman-Bodian-Diamond syndrome (SBDS) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.2   1.7e-21   3.1e-17       3      80 ..      27     113 ..      26     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.7e-21
                 EEEEEEETTEEEEEEE.-HHHHHHHHCTT---.HHHHBSSSS-EEET.TTT.....EE--HHHHHHHHS--.-HHHHHHHHHHHSEE CS
        SBDS   3 sivrykkgkkrFeiav.yknklleyregkeid.LsevlqsekiFtna.skG.....etaskselekafgte.skdeiikeILkkGei 80 
                 ++++y+++ ++F+i+v +++++++y e+ +i+ Ls+v+++++iF+n+  kG      +as ++l+++fg   +++e+i+ ILkkGe 
  CCD23842.1  27 TKYAYRGERTDFIIFVrSEDAVKQYLEKPDISdLSKVVEVFQIFVNReAKGttgelGEASSAQLQNEFGDYkKEEEVIDLILKKGES 113
                 57899999999****************999866*************98899999****************98999**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1008.09
//
Query:       CCD23843.1  [L=498]
Description: hypothetical protein NDAI_0C01820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-43  145.9   0.0    3.5e-15   55.6   0.0    3.4  3  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    7.4e-05   22.8   0.1      0.035   14.2   0.0    3.5  3  RRM_7         RNA recognition motif
    0.00013   21.7   0.0       0.57   10.1   0.0    3.2  3  RRM_occluded  Occluded RNA-recognition motif
  ------ inclusion threshold ------
      0.022   14.8   0.0       0.27   11.3   0.0    2.6  3  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
        0.1   12.6   0.0       0.25   11.4   0.0    1.6  1  RRM_3         RNA binding motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   2.3e-11   8.1e-08       1      65 [.      72     137 ..      72     140 .. 0.95
   2 !   55.6   0.0   9.8e-19   3.5e-15       1      70 []     174     245 ..     174     245 .. 0.98
   3 !   54.5   0.0   2.2e-18   7.7e-15       1      70 []     328     392 ..     328     392 .. 0.98

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 2.3e-11
                 EEEESETTTSSHHHHHHHHHTTSCE.EEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEET CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpi.ksiklvrd.etgkskgfafVeFeskedAekAlealngkklg 65 
                 +++g L p+ te ++k + +  G+   ++kl+ + + g ++g++f+eF+s+  A +Al   ng +++
  CCD23843.1  72 IYMGELDPTWTEATIKSIWKSLGEElINVKLIWNkNLGLNQGYCFIEFPSEQHASNALL-KNGINIP 137
                 89*******************99998********************************9.8988775 PP

  == domain 2  score: 55.6 bits;  conditional E-value: 9.8e-19
                 EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +fVg+L+ +vte +L +lF   f +  ++k+v+d  t+ sk+++fV+F++ +d ++Al +++g  l+gr +k
  CCD23843.1 174 VFVGDLAANVTEGQLFDLFISrFQSTCHAKIVHDpVTRASKCYGFVKFNDLRDQQRALVEMQGIFLNGRAIK 245
                 8******************999***********************************************996 PP

  == domain 3  score: 54.5 bits;  conditional E-value: 2.2e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +fVg+L++ vtee+L+  F++fG i  +k++       kg++fV++ ++ +Ae A+ +++g  +g+++++
  CCD23843.1 328 VFVGGLSSMVTEEQLRHCFQPFGTIIYVKIPIG-----KGCGFVQYFDRISAETAILRMQGFPIGNSRIR 392
                 8*******************************7.....****************************9986 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.098   3.5e+02       4      69 ..      72     132 ..      69     155 .. 0.64
   2 ?    2.7   0.0     0.039   1.4e+02       4      23 ..     174     193 ..     171     233 .. 0.79
   3 !   14.2   0.0   9.8e-06     0.035       3      29 ..     327     353 ..     325     364 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.098
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedek.svkaLlea 69 
                 +++G l +  te+ +k+ +k+ g+ l++     ++      n   ++gy f+ f +e+ + +aLl++
  CCD23843.1  72 IYMGELDPTWTEATIKSIWKSLGEELINVKLIWNK------NLGLNQGYCFIEFPSEQhASNALLKN 132
                 56666666666666666666666666654333333......23345799999997775144566665 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.039
       RRM_7   4 vFvGGlPiDiteeelkatfk 23 
                 vFvG l +++te +l + f 
  CCD23843.1 174 VFVGDLAANVTEGQLFDLFI 193
                 9************9998874 PP

  == domain 3  score: 14.2 bits;  conditional E-value: 9.8e-06
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvl 29 
                  vFvGGl   +tee+l + f+ fg+++
  CCD23843.1 327 TVFVGGLSSMVTEEQLRHCFQPFGTII 353
                 69**********************864 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.15   5.3e+02      37      57 ..     111     131 ..      76     148 .. 0.75
   2 !    6.7   0.0    0.0019       6.7      42      73 ..     218     249 ..     193     251 .. 0.89
   3 !   10.1   0.0   0.00016      0.57       3      70 ..     327     393 ..     325     397 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.15
  RRM_occluded  37 dheGAivefkdekiagkasLa 57 
                   +++ +++ef +e++a  a+L+
    CCD23843.1 111 NQGYCFIEFPSEQHASNALLK 131
                   555699*********999996 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0019
  RRM_occluded  42 ivefkdekiagkasLaLdgsefegkklrcGtv 73 
                   +v+f+d ++  +a+ +++g+ ++g+ +++Gt+
    CCD23843.1 218 FVKFNDLRDQQRALVEMQGIFLNGRAIKIGTT 249
                   799***************************96 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00016
  RRM_occluded   3 tisllplsDtvnkariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklrc 70 
                   t+ + +ls  v+++++r+ +++  g i  + +   +++ +v++ d+ +a  a+L ++g  + + ++r 
    CCD23843.1 327 TVFVGGLSSMVTEEQLRHCFQPF-GTIIYVKIPIGKGCGFVQYFDRISAETAILRMQGFPIGNSRIRL 393
                   5666789999*************.****************************************9996 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.93   3.3e+03      30      53 .]     106     129 ..     103     129 .. 0.78
   2 ?   -0.3   0.0      0.31   1.1e+03      36      53 .]     214     231 ..     203     231 .. 0.79
   3 ?   11.3   0.0   7.4e-05      0.27       2      52 ..     326     377 ..     325     378 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.93
  Nup35_RRM_2  30 hyvpkevsvmyvkfesekdaekAL 53 
                  ++ + ++ + +++f se  a  AL
   CCD23843.1 106 KNLGLNQGYCFIEFPSEQHASNAL 129
                  55665677899*******999997 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.31
  Nup35_RRM_2  36 vsvmyvkfesekdaekAL 53 
                  + + +vkf + +d ++AL
   CCD23843.1 214 KCYGFVKFNDLRDQQRAL 231
                  55789**********998 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 7.4e-05
  Nup35_RRM_2   2 twvaVsGydtelielVleh.FasfGeIvkhyvpkevsvmyvkfesekdaekA 52 
                  t+v V G +    e+ l+h F+ fG I    +p+++   +v++ ++ +ae+A
   CCD23843.1 326 TTVFVGGLSSMVTEEQLRHcFQPFGTIIYVKIPIGKGCGFVQYFDRISAETA 377
                  78888888877777777763777****************************9 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     7e-05      0.25       4      54 ..     328     378 ..     326     392 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7e-05
                 EEEEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHH CS
       RRM_3   4 lklsGlnkelsredikellsklgevayvdyekgdkegevrFkedeeakkal 54 
                 +++ Gl++ ++ e+++++++ +g++ yv    g+  g v++ +  +a+ a+
  CCD23843.1 328 VFVGGLSSMVTEEQLRHCFQPFGTIIYVKIPIGKGCGFVQYFDRISAETAI 378
                 77889***********************************99988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3852.00
//
Query:       CCD23844.1  [L=721]
Description: hypothetical protein NDAI_0C01830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-33  114.6   1.2    5.4e-33  113.7   1.2    1.4  1  STE         STE like transcription factor
     0.0099   16.3   0.0      0.024   15.0   0.0    1.6  1  SDH_beta    Serine dehydratase beta chain
  ------ inclusion threshold ------
      0.011   15.5   2.2      0.011   15.5   2.2    3.4  3  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> STE  STE like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   1.2   9.1e-37   5.4e-33      39     110 .]      30     101 ..      16     101 .. 0.92

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 9.1e-37
         STE  39 leafGrkitdkkkfeeGifsdlrnlkigvdavleepksefldllyknkclrtqkkqkvfywfsvphdklfld 110
                  +++  k+ ++ kfeeGifsdlrnlk+g+da+le+pks fl++l+kn cl+tqkkqkvf+wfsvphdklf+d
  CCD23844.1  30 CKNLVEKLFKREKFEEGIFSDLRNLKCGIDAILEQPKSAFLQFLFKNICLKTQKKQKVFFWFSVPHDKLFAD 101
                 5677788999************************************************************98 PP

>> SDH_beta  Serine dehydratase beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     4e-06     0.024      26     116 ..     378     470 ..     372     480 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4e-06
                 HHHHHHHHTT-TTT--EEEEEEEHHHHHS-TTSSHHHHHHHHHTT--TTTS-GGGHHHHHHHHHHHTEEEETT..TEEEE--HHHHEEEETT- CS
    SDH_beta  26 aFveelkekelleevarirveLyGsLaatgkghgtdeAvllGLegeepetvdpdavesrleeieeekklklag..ekeiefdeeedivlekkk 116
                  F+++l++ +  + ++++    +GsL+at   ++t+   +  L++++p ++++d+v++  e+++++++ k ++  +k++++ +++++  +++ 
  CCD23844.1 378 VFMNDLQQPQSASYLSTLVSPTLGSLSATRPHFMTNGEYYESLQNQQPLQLNTDEVTTIDEHLNNQEQEKNSDnnSKRLPYASDQQLYQQQQM 470
                 68888888888888888888999******************************9998888887766655544312568888888777766654 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9  12.2      0.73   4.4e+03     100     146 ..     229     281 ..     100     292 .. 0.70
   2 ?   -1.5   1.0      0.29   1.7e+03      55      72 ..     437     454 ..     411     476 .. 0.46
   3 ?   15.5   2.2   1.8e-06     0.011      94     151 ..     660     706 ..     554     713 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.73
                 --------..--....--------------------......--------------- CS
  Cwf_Cwc_15 100 rkeelleearei....daddedseeeeeeeeeesdd......dsdsdsdddddedet 146
                 r++e++++  +i    d+d++ ++++ +++    +d      d+ +d dd dd+d++
  CCD23844.1 229 RSNEMISQPMNIpiphDKDENGNNKSGTSS----EDinihlfDDVDDGDDGDDDDNN 281
                 444555554333112255555444433333....33334454332333332222222 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHH-- CS
  Cwf_Cwc_15  55 raeLeeaeaeakakkrkk 72 
                  + L+++e+e+++++++k
  CCD23844.1 437 DEHLNNQEQEKNSDNNSK 454
                 223333333333333222 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 1.8e-06
                 ----------.----..------------------------------------------ CS
  Cwf_Cwc_15  94 eeeakrrkee.lleeareidaddedseeeeeeeeeesdddsdsdsdddddedetaeLlr 151
                 ++ +k ++++  l+++re+d+d +++e +             +d+ddddd+de++    
  CCD23844.1 660 KQLSKISRHAsNLSDKRELDKDASNHEGSA------------DDDDDDDDNDENNDAND 706
                 222222222225556677777777664322............22222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1053  (0.0587317); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.40
# Mc/sec: 5407.69
//
Query:       CCD23845.1  [L=352]
Description: hypothetical protein NDAI_0C01840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-40  137.3   6.5    5.4e-40  136.6   1.9    2.5  3  SAM35            SAM35, subunit of SAM coomplex
  ------ inclusion threshold ------
      0.056   12.2   0.5      0.081   11.7   0.5    1.2  1  G_glu_transpept  Gamma-glutamyltranspeptidase
      0.069   13.6   1.8       0.18   12.2   1.8    1.7  1  DUF4174          Domain of unknown function (DUF4174)
      0.088   13.0   0.3       0.16   12.1   0.1    1.6  2  Popeye           Popeye protein conserved region


Domain annotation for each model (and alignments):
>> SAM35  SAM35, subunit of SAM coomplex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   1.9   1.2e-43   5.4e-40       1     127 []       4     137 ..       4     137 .. 0.95
   2 ?   -3.5   0.1       2.7   1.2e+04      80      92 ..     221     233 ..     206     240 .. 0.77
   3 ?    2.7   0.0     0.031   1.4e+02       2      51 ..     254     305 ..     253     332 .. 0.72

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 1.2e-43
       SAM35   1 lkvPspvkkvFdkfPlktYepveksdeaakkeiesrsyeF.egnskseksendtfkLgvynvfeesetdsvLatdPlclfaqLalckknnlkLPtksee 98 
                 l+vPsp+k +Fd+fPl+tY+p++++d++++++i+sr+y+F + n +++   +++f+L+vynv+++ +++++L+tdP+c++ q+alc knnlkLP++++ 
  CCD23845.1   4 LTVPSPIKLLFDTFPLVTYPPINNQDTQRQNDIDSRTYPFtTINVENNGMIDKSFSLAVYNVYKHPKKNAILCTDPICQYLQFALCLKNNLKLPSNNNL 102
                 68**************************************65678888999***********************************************9 PP

       SAM35  99 eksekkkqk......slvvlsekaskdeeLPiLie 127
                 +  +k++ +      ++++ls+ a++++ LPiLie
  CCD23845.1 103 SLIDKNPPSisisenNVITLSYLATPQRILPILIE 137
                 999887766999999*******************8 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.7
       SAM35  80 aqLalckknnlkL 92 
                 ++L+++++n+ +L
  CCD23845.1 221 QKLSIANRNQFNL 233
                 5677888887776 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.031
       SAM35   2 kvPspvkkvFdkfPl..ktYepveksdeaakkeiesrsyeFegnskseksen 51 
                 ++ + ++ +F++f +  +++e + k +++++++ ++ s+  + +++++ ++n
  CCD23845.1 254 QIDQLLQLLFERFKIsmTQFENILKDKKQHSSSSSASSFLLSADHADKGKAN 305
                 6677888999999652278999999999999999999998865555555444 PP

>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   1.8e-05     0.081     239     306 ..     236     307 ..     212     316 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.8e-05
                      HHHHCTTT....GGGCTTTCHHHHHHHHHHHHHHHHHHHHH-SSTTTSSSGHCHHHHHT-HHHHHHHHTT.B CS
  G_glu_transpept 239 Lnilegfd....lkslssnsaetlhllvEamklayadRsrylgDpdfvknptelveellskeyakeraklIk 306
                      L+++++++    ++s + +  + l+ll+E +k+++ + +++l D ++++ ++++ + lls+++a++ +++I+
       CCD23845.1 236 LELMNHLNsivrTNSHKLQIDQLLQLLFERFKISMTQFENILKDKKQHSSSSSASSFLLSADHADKGKANIS 307
                      555666664334444555559******************************9**************999997 PP

>> DUF4174  Domain of unknown function (DUF4174)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.8   4.1e-05      0.18      23      92 ..     216     282 ..     209     292 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.1e-05
     DUF4174  23 kykqqreeleeqecelaeRklvvltivgsgaketgkieeeqlsaeliselrkelklsekdfsmvLigkdg 92 
                 ++ qq++   +++++++ R+l ++  ++s  ++++   ++    +l + l +++k+s  +f+ +L +k  
  CCD23845.1 216 HLLQQQKLSIANRNQFNLRNLELMNHLNSIVRTNS---HKLQIDQLLQLLFERFKISMTQFENILKDKKQ 282
                 4445555555****************999988877...88889999*******************99876 PP

>> Popeye  Popeye protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         3   1.3e+04      95     107 ..     192     204 ..     179     209 .. 0.69
   2 ?   12.1   0.1   3.6e-05      0.16      68     111 ..     239     282 ..     229     341 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3
                 xxxxxxxxxxxxx RF
      Popeye  95 lkvsrkeFkklvs 107
                 ++v+ ++F++  +
  CCD23845.1 192 FNVPSEQFHETYH 204
                 6788888877655 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 3.6e-05
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Popeye  68 llyllyklrpvkfekeleelYkklFqplkvsrkeFkklvseeea 111
                 + +l   +r  + + ++++l + lF+++k+s ++F+++++++++
  CCD23845.1 239 MNHLNSIVRTNSHKLQIDQLLQLLFERFKISMTQFENILKDKKQ 282
                 55666667778888999**********************94433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.33
# Mc/sec: 3166.21
//
Query:       CCD23846.1  [L=1244]
Description: hypothetical protein NDAI_0C01850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-42  146.3   0.1    3.2e-38  131.6   0.1    2.6  2  Pkinase      Protein kinase domain
    7.6e-21   74.5   0.0    4.9e-20   71.9   0.0    2.0  2  Pkinase_Tyr  Protein tyrosine kinase
    5.4e-05   22.6   1.2    0.00025   20.5   0.0    2.3  3  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.8e-05      0.11       1      40 [.      18      57 ..      18      67 .. 0.88
   2 !  131.6   0.1   5.4e-42   3.2e-38      44     252 ..     104     309 ..      91     320 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.8e-05
                EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHH CS
     Pkinase  1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkk 40
                y+k+e + eGs+G V  a++++++k vA+K i k + +++
  CCD23846.1 18 YQKIEDISEGSYGYVSLAKDTKEKKLVAIKYIFKLDPDQR 57
                789999*************************988766655 PP

  == domain 2  score: 131.6 bits;  conditional E-value: 5.4e-42
                 HHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS.--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE CS
     Pkinase  44 kvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgs.lseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKi 139
                 +++ E+ i  k+  h+niv l+++f      y+++ey++gg+l ++++++    + + + +i++qi+ ++e++H+kgi HrD+KpeNiLi   +  +K+
  CCD23846.1 104 EAMYEVDIQTKIGrHKNIVALLDFFD----SYIIMEYCSGGDLYEAIKDDILpRKTKPITHIISQIMDAIEFVHNKGIYHRDIKPENILITgIDWTIKL 198
                 5788********99***********9....79***************96555588889*********************************77888*** PP

                 -SGTTSEESSSSCSBCTTTSCGGGS-HHHH........TTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HH CS
     Pkinase 140 tDFGlakelessskltsfvgtseYlAPEvl........keney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpe 229
                 tD+Gla+  ++  +++  vg+++Y+APE+         ++++y   kvD+W++G++++++++ k+pfs  ++++k    +           + +  ++ 
  CCD23846.1 199 TDWGLATTDKT--SFDRSVGSERYMAPELFesnldldeRKEPYsCDKVDLWAMGIVFLNIVFHKNPFSVANQSDKSFCYFA---------ANREALFDV 286
                 ******97655..48***************9999998877999789**********************5555543322222.........244555666 PP

                 HTTS-HHHHHHHHHHT-SSGCCS CS
     Pkinase 230 aseiseeakdllkkllkkdpkkR 252
                  s++  ++ ++l+  l+ dp++R
  CCD23846.1 287 FSTMTYDFFQVLRYSLTIDPTNR 309
                 66666666666666666666666 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.08   4.8e+02       4      36 ..      21      49 ..      18      64 .. 0.78
   2 !   71.9   0.0   8.1e-24   4.9e-20      47     249 ..     104     309 ..      92     318 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.08
                 EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE CS
  Pkinase_Tyr  4 gkklGeGafGkVvegtlkgekekkevkVavKtl 36
                  +++ eG++G V  ++ +    k++  Va+K +
   CCD23846.1 21 IEDISEGSYGYVSLAKDT----KEKKLVAIKYI 49
                 68899*******999988....78889999987 PP

  == domain 2  score: 71.9 bits;  conditional E-value: 8.1e-24
                  HHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.TTEE CS
  Pkinase_Tyr  47 elleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.nkvv 142
                  e + e++i +k+ +h+niv+ll +       +i++ey++gGdL + ++++   + ++k +++++ q+ +++e++++k + Hrd+   N+L++  + ++
   CCD23846.1 104 EAMYEVDIQTKIgRHKNIVALLDFFD----SYIIMEYCSGGDLYEAIKDD-ILPRKTKPITHIISQIMDAIEFVHNKGIYHRDIKPENILITGiDWTI 196
                  67899*******************98....69*****************9.9999*************************************8466** PP

                  EE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.........EEHHHHHHHHHHHHHHHHTTSSGTTTTS..HHHHHHHHH.HTTEES-BBT CS
  Pkinase_Tyr 143 kisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.........ftsksDvWsfGvllwEiftlgespypgl..kneevlekl.kegkrlekpe 228
                  k++D GLa +       ++ +++  + ++mapE ++++             k D W+ G++   i+   ++p++    ++++++ +  +++   +  +
   CCD23846.1 197 KLTDWGLATTD-----KTSFDRSVGSERYMAPELFESNLdlderkepySCDKVDLWAMGIVFLNIVF-HKNPFSVAnqSDKSFCYFAaNREALFDVFS 288
                  ********976.....445556667789********9999999999955679************987.566665442155666666624444455666 PP

                  TSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 229 kcpeelyelmkkcweedpeeR 249
                  +++ ++ ++++ +++ dp++R
   CCD23846.1 289 TMTYDFFQVLRYSLTIDPTNR 309
                  777777777777777777777 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   4.2e-08   0.00025     152     255 ..     164     268 ..     153     281 .. 0.85
   2 ?    0.0   0.0      0.07   4.2e+02      24      68 ..     279     323 ..     274     330 .. 0.89
   3 ?   -4.3   0.7       1.5   8.7e+03     201     231 ..     494     524 ..     488     525 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.2e-08
  Kinase-like 152 qlirlaanLqakglvhgkftvdnlllde.kgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclkl 248
                  q++  +   ++kg+ h +++++n+l    +  ++l++ +   +++t+   s   + +  pEl+ s     ++++  +  k+d W++G+v + i   k 
   CCD23846.1 164 QIMDAIEFVHNKGIYHRDIKPENILITGiDWTIKLTDWGLATTDKTSFDRSVGSERYMAPELFESNLDLDERKEPYSCDKVDLWAMGIVFLNIVFHKN 261
                  55555666799*************9975489*****************9788889**********88899988888999****************999 PP

  Kinase-like 249 Pltlate 255
                  P+  a +
   CCD23846.1 262 PFSVANQ 268
                  9986654 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.07
  Kinase-like  24 drsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelairl 68 
                  +r+++f v    t + ++v   +l+ ++ ++dl++++ + l + +
   CCD23846.1 279 NREALFDVFSTMTYDFFQVLRYSLTIDPTNRDLKKMRMELLNLSE 323
                  577889999999999**********************99998765 PP

  == domain 3  score: -4.3 bits;  conditional E-value: 1.5
  Kinase-like 201 sevekgfaPpEllgsrggytrknktkmthkl 231
                  +e +  f+P   ++   gyt k+++k+t k+
   CCD23846.1 494 NEYNTKFNPNRRESYNVGYTSKERAKSTPKF 524
                  677788999999999999********99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1838  (0.102515); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.01u 0.28s 00:00:01.29 Elapsed: 00:00:00.43
# Mc/sec: 8758.01
//
Query:       CCD23847.1  [L=209]
Description: hypothetical protein NDAI_0C01860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0013   19.3   3.8     0.0013   19.3   3.8    2.7  3  Sas10_Utp3  Sas10/Utp3/C1D family
  ------ inclusion threshold ------
       0.39   10.4   8.0       0.48   10.1   8.0    1.1  1  DUF2981     Protein of unknown function (DUF2981)
       0.54   10.6   3.7        1.5    9.3   1.7    2.2  2  POPLD       POPLD (NUC188) domain
        2.3    8.5   8.5       0.78   10.0   3.8    2.5  2  C2-set      Immunoglobulin C2-set domain


Domain annotation for each model (and alignments):
>> Sas10_Utp3  Sas10/Utp3/C1D family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   3.8   2.9e-07    0.0013       1      87 []      14      92 ..      14      92 .. 0.81
   2 ?   -0.1   0.2      0.34   1.5e+03      44      55 ..     114     125 ..      93     177 .. 0.48
   3 ?   -0.3   1.1      0.37   1.7e+03      23      39 ..     179     206 ..     165     209 .] 0.41

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.9e-07
  Sas10_Utp3  1 leslsksldelqeslepllskakaeekkslsd.....eklsegisllslKnelllaYllnlllylllk.lsgvelkdhpvvkeLvrlRvyleK 87
                l++l+k+l+ l+++l++l+s       ksl+d     +++      ++l++    aY+l++l++++ k l+ ++l+   +  eL r++ y+++
  CCD23847.1 14 LNNLQKQLNLLNPLLAKLTS-------KSLDDhliliNNE-----PERLELTNKFAYILTSLMFAYIKiLNFKDLS--NIQYELNRVKDYMQR 92
                789*****************.......4666667753333.....469999999**************55556555..599*********987 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.34
  Sas10_Utp3  44 lKnelllaYlln 55 
                 +Kn ++++   n
  CCD23847.1 114 AKNLIISSLNRN 125
                 444443333333 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.37
  Sas10_Utp3  23 kaee.kkslsd............eklsegi 39 
                 k+++ +  +++            +k++++i
  CCD23847.1 179 KNKNkN--KPSskkqartekrtaQKMKNKI 206
                 222221..1112333333344444444444 PP

>> DUF2981  Protein of unknown function (DUF2981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   8.0   0.00011      0.48      63     203 ..      56     200 ..      50     209 .] 0.63

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
     DUF2981  63 lvfylislvlvvltvLdmaelvhllPkaPqlkdvsdf..qkseaflrkrklpddkkllpddiskastd..ennlpdaklrvpqneespikqhvrsdvns 157
                 +++ l sl++  + +L++ +l ++     ++kd+ +     ++ +++k+++ + +k + ++   +s +  + ++ ++++++ ++ +   +q v++  n+
  CCD23847.1  56 FAYILTSLMFAYIKILNFKDLSNIQYELNRVKDYMQRanSLKNKLMEKNNSNEREKSNAKNLIISSLNrnDSAISNQNFQKGKHTKFNEQQSVTTTTNM 154
                 566788999999999999999999888888777665433344566666666666666666544444332255677777777766666666777777777 PP

     DUF2981 158 pantaelatidaalrdlekakkliretatkvpvgaasskipkeatl 203
                  + + +++  +a +++  ++kk  ++ ++++p+ +++ ++ k+++ 
  CCD23847.1 155 TSVDNNSIDREAIMNNIVENKKKNKNKNKNKPSSKKQARTEKRTAQ 200
                 7766666666666666666666666666666655555544444332 PP

>> POPLD  POPLD (NUC188) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.13   5.8e+02      14      63 ..      59     108 ..      54     118 .. 0.53
   2 ?    9.3   1.7   0.00032       1.5      28      76 ..     142     190 ..     128     201 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.13
       POPLD  14 fwlsLvrvgvrvgGlrerrqlalesgkpyfPddypdtkagekeekeeeee 63 
                 ++ sL++  ++++ +++  ++++e ++     +   +  ++ +ek++++e
  CCD23847.1  59 ILTSLMFAYIKILNFKDLSNIQYELNRVKDYMQRANSLKNKLMEKNNSNE 108
                 66777777788888888888888865543222222222222222222222 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00032
       POPLD  28 lrerrqlalesgkpyfPddypdtkagekeekeeeeeaeekwerkPpskR 76 
                 ++e++++ +  ++ ++ ++ +d +a ++   e+++++++k ++kP sk+
  CCD23847.1 142 FNEQQSVTTTTNMTSVDNNSIDREAIMNNIVENKKKNKNKNKNKPSSKK 190
                 689999*****************************************97 PP

>> C2-set  Immunoglobulin C2-set domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.8   0.00017      0.78       7      55 ..     113     159 ..     108     184 .. 0.86
   2 ?   -0.7   1.1      0.38   1.7e+03      23      43 ..     176     196 ..     162     203 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00017
                 T.TEEEEECCSESEEETCCECEEEEEEESSEEEEEECSCEEEEE--SGCS CS
      C2-set   7 v.nvLtcevLeltLekpskmdpslklkeqekksletkklestfqpttedi 55 
                 + ++L + +L+ +   +s +++++++k++ +k +e+++++ t ++t+ d+
  CCD23847.1 113 NaKNLIISSLNRN---DSAISNQNFQKGKHTKFNEQQSVTTTTNMTSVDN 159
                 4478888889888...**************************99988776 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.38
                 CCECEEEEEEESSEEEEEECS CS
      C2-set  23 skmdpslklkeqekksletkk 43 
                 +k ++++k k+ +kk  +t+k
  CCD23847.1 176 KKNKNKNKNKPSSKKQARTEK 196
                 333444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3970  (0.221429); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 1598.77
//
Query:       CCD23848.1  [L=1524]
Description: hypothetical protein NDAI_0C01880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-67  224.3  14.6    9.5e-36  123.5   0.3    3.5  4  VASt      VAD1 Analog of StAR-related lipid transfer domain
    1.6e-24   86.0   1.5    1.6e-24   86.0   1.5    2.3  3  GRAM      GRAM domain


Domain annotation for each model (and alignments):
>> VASt  VAD1 Analog of StAR-related lipid transfer domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.7      0.72   6.5e+03      36      99 ..     232     291 ..     216     302 .. 0.50
   2 ?   -3.4   0.1       1.3   1.1e+04      50      73 ..     344     369 ..     312     375 .. 0.64
   3 !  123.5   0.3   1.1e-39   9.5e-36       2     154 .]     956    1100 ..     955    1100 .. 0.95
   4 !  110.4   0.3   1.1e-35     1e-31       4     154 .]    1169    1310 ..    1166    1310 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.72
                 -BS-H.HHSE..........EEEEEEEE--SSSS-SEEEEEE......EEE..EEEEETT.EEEEEEEEE-T CS
        VASt  36 ttdisvgpweeake.kgkltRklsytkplkgsigpkqtkvte......tqtilveeddly.yivvvtttktp 99 
                 ++d+  ++w+++ + ++k + +++ t++ +                    t+ ++++d y    v+ttt tp
  CCD23848.1 232 NNDM-TNDWNSKYTvSNKSSTNIKNTTNSN-----------NnglfdnLWTLAKKKYDNYkNTHVDTTTNTP 291
                 4444.3555433332222223333333333...........1233333444445555555556688888887 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.3
                 .....EEEEEEEE--SS.SS.-SEEE CS
        VASt  50 kgkltRklsytkplkgs.ig.pkqtk 73 
                 +++  R ++ + +l+g+ ++  k t+
  CCD23848.1 344 NSQGIRSITSQSTLNGHsLKkTKNTH 369
                 45566888888999988774344444 PP

  == domain 3  score: 123.5 bits;  conditional E-value: 1.1e-39
                  EEEEEESS-HHHHHHHHHSS-THHHHHHHHH.TT-BS-H.HHSE.........EEEEEEEE--SSSS-SEEEEEEEEE..EEEEETT.EEEEEEEEE CS
        VASt    2 lveevlpisvkalfellfgdkseflkkfleerqkttdisvgpweeakekgkltRklsytkplkgsigpkqtkvtetqtilveeddly.yivvvtttk 97  
                  ++e++l++++ ++f++lfg+++++++++l+++ k++di+ +p  +  +   ++R++ ytkpl++sigp++tk+++t+t  +++ dl+ yi+v + t+
  CCD23848.1  956 ICETNLNAPLSTIFNILFGNDTSYFESILQKA-KNFDIQPSPLPKLLP--SKKREYVYTKPLTSSIGPSKTKCIITET--LDNFDLNdYIQVTQLTS 1047
                  799****************************7.*****9999977765..99**************************..89999999********* PP

                  -T.TSTTTTSEEEEEEEEEEEETTTE..E.EEEEEEEEEESS--TTHHHHHHHHHHH CS
        VASt   98 tpldvPygdsFsvetryvitwgsknskstcrltvstkvefsksswlkgiIekgalkg 154 
                  +p dvP+g+sF+++t + ++w+s+n+  t +  +++ + ++ +sw+k++Iekg+++g
  CCD23848.1 1048 NP-DVPSGNSFKTKTVFLLSWDSNNT--T-KFMAYVSIIWTAKSWIKNAIEKGTVDG 1100
                  **.******************88777..5.***********99***********987 PP

  == domain 4  score: 110.4 bits;  conditional E-value: 1.1e-35
                  EEEESS-HHHHHHHHHSS-THHHHHHHHH.TT-BS-H.HHSE.........EEEEEEEE--SSSS-SEEEEEEEEE..EEEEETT.EEEEEEEEE-T CS
        VASt    4 eevlpisvkalfellfgdkseflkkfleerqkttdisvgpweeakekgkltRklsytkplkgsigpkqtkvtetqtilveeddly.yivvvtttktp 99  
                  + ++++++++ ++llfg++ +flkk+l ++ ++ +i  ++    ++  + +R ++y+k+l++s+gpkqt+++  ++  v+++dl+ yi v + tktp
  CCD23848.1 1169 NGKINVPMGTTYKLLFGEDISFLKKILLKQ-NNINI--SNIP--NKFVNEERSYTYIKKLNNSLGPKQTNCNVVES--VQHYDLEnYILVKQLTKTP 1258
                  56799************************6.87777..6663..446788**************************..99****99*********** PP

                  .TSTTTTSEEEEEEEEEEEETTTE..E.EEEEEEEEEESS--TTHHHHHHHHHHH CS
        VASt  100 ldvPygdsFsvetryvitwgsknskstcrltvstkvefsksswlkgiIekgalkg 154 
                   dvP+g++Fsv + + +tw+++++  ++ ++v t+v +s++s+lk++Iekg+++g
  CCD23848.1 1259 -DVPSGSTFSVASLIYLTWDKEET--STDINVITNVIWSGKSFLKSAIEKGSIEG 1310
                  .******************88766..56************99**********987 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2      0.76   6.8e+03      54      83 ..     433     462 ..     421     471 .. 0.54
   2 !   86.0   1.5   1.8e-28   1.6e-24       2     111 ..     750     857 ..     749     860 .. 0.96
   3 ?   -3.3   0.0      0.91   8.1e+03       3      17 ..    1433    1446 ..    1432    1452 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.76
                 E.EEEEGGGE...EEEEE....-TT-TT-EEEEE CS
        GRAM  54 k.vvlpladi...kriekstsaanllengiqvet 83 
                 + +  p+++i    +i+k    +n   +++++e+
  CCD23848.1 433 StISTPVYSIpktNNINK----RNSTSSQLTIES 462
                 235559999965555666....333334444444 PP

  == domain 2  score: 86.0 bits;  conditional E-value: 1.8e-28
                 HHHHHS--..--TT--EEEEEEEEEESS.SEEEEEEEEESSEEEEEE-STT---EEEEEGGGEEEEEE....-TT-TT-EEEEESS-..EEEEE--TTH CS
        GRAM   2 lfrkkfke..llpeEkllatykCyllrdggpvqGrlyltnyrlcFrskplgsskkvvlpladikriekstsaanllengiqvetsskdlelaFagfvtr 98 
                 +f+++fk+  ++ +Ekl++++ C+l++d ++ qG+ly++n++l+F+s++lg+ ++vv+ +++i +i+k + +  +++n+i ++t +   +++Fa+fv+r
  CCD23848.1 750 EFHNFFKDtdIQSNEKLITEFTCALSKD-ILLQGKLYISNKHLAFYSNILGWITTVVISFQEIIQIKK-KTTMGIFPNAIVIDTLNS--RYTFASFVQR 844
                 6899999999******************.***************************************.9*****************..8********* PP

                 HHHHHHHHHHHHH CS
        GRAM  99 deaiefieellkk 111
                 d+++++ ++ +++
  CCD23848.1 845 DTIFKLVTNIWNQ 857
                 **********997 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.91
                  HHHHS----TT--EE CS
        GRAM    3 frkkfkellpeEkll 17  
                  ++k+fk llp++k++
  CCD23848.1 1433 NHKSFK-LLPNDKII 1446
                  5899**.***99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1641  (0.0915277); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.48
# Mc/sec: 9488.36
//
Query:       CCD23849.1  [L=1441]
Description: hypothetical protein NDAI_0C01890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-43  146.7   2.4    4.8e-43  146.4   0.7    2.1  2  Ribonuc_2-5A    Ribonuclease 2-5A
    1.4e-42  145.9   0.0    4.1e-31  108.3   0.0    2.7  2  Pkinase         Protein kinase domain
    8.6e-21   74.4   0.0    3.2e-18   65.9   0.0    2.3  2  Pkinase_Tyr     Protein tyrosine kinase
    3.1e-05   23.7   0.3       0.28   11.2   0.0    3.9  4  PQQ             PQQ enzyme repeat
    0.00036   19.4   2.7    0.00036   19.4   2.7    2.1  2  Pkinase_fungal  Fungal protein kinase
      0.002   17.5   0.1     0.0041   16.5   0.1    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.012   15.2   0.0      0.074   12.6   0.0    2.1  1  PQQ_2           PQQ-like domain


Domain annotation for each model (and alignments):
>> Ribonuc_2-5A  Ribonuclease 2-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.3     6e+03      60      75 ..     316     332 ..     295     342 .. 0.69
   2 !  146.4   0.7   1.9e-46   4.8e-43       1     126 [.    1313    1439 ..    1313    1440 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.3
  Ribonuc_2-5A  60 dsvrdLLR.aiRNkkeH 75 
                   +s  +L++ +iR+kkeH
    CCD23849.1 316 KSTSHLIKdLIREKKEH 332
                   44555665457888888 PP

  == domain 2  score: 146.4 bits;  conditional E-value: 1.9e-46
  Ribonuc_2-5A    1 rlefLrdvSdrfeiekrdpesellkkLeseasev.vksdWtkkldkelvdslgkyrkYkgdsvrdLLRaiRNkkeHyeelpedvkeilgelpegf 94  
                    +lefL +vSdrfeie+rdp+s+ll kLes+a+ v  ++dW++++dk+++d+lgkyrkY+ ++++dLLRa+RNk++H+ +lp+d+ +i+g++p+gf
    CCD23849.1 1313 KLEFLLKVSDRFEIERRDPPSPLLLKLESHARVVfPHGDWSHNFDKAFMDNLGKYRKYSASKLMDLLRALRNKYHHFMDLPQDLAQIMGPIPNGF 1407
                    699*******************************6677********************************************************* PP

  Ribonuc_2-5A   95 lsYftkrFPkLlievyevvketlkeeevfkky 126 
                    ++Yf++rFPkLl+evy+++k+ l+++ +++++
    CCD23849.1 1408 YKYFSRRFPKLLMEVYHLTKDELSDDLMLHEF 1439
                    *********************99999888877 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.0   1.6e-34   4.1e-31       4     172 ..     994    1181 ..     992    1190 .. 0.85
   2 !   34.5   0.0   5.3e-12   1.4e-08     169     264 .]    1218    1307 ..    1197    1307 .. 0.77

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 1.6e-34
                  EEEEEEESSEEE.EEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase    4 leklGeGsfGkV.ykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslsee 98  
                  ++ lG Gs+G+V ++++   +++ vAvK++  +  +      + rEik+l +++ h+n+vr+y + ++++ ly+ le++  + l+dl+e k   +e 
  CCD23849.1  994 NKILGYGSSGTVvFQGT--FQNRPVAVKRMLIDFCDI-----ASREIKLLTESDdHKNVVRYYCSETTDKFLYIALELCTST-LQDLIEMKNPTDEL 1082
                  678*******9845666..89*********9986554.....679***********************************65.*****965555554 PP

                  .......HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.T......TTE.......EEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHH CS
     Pkinase   99 .......eakkiakqilegleylHskgiiHrDlKpeNiLid.e......kge.......lKitDFGlakelesssk.....ltsfvgtseYlAPEvl 169 
                         +  +i++qi +g+++lHs +iiHrD+Kp+NiL+  +      + +       ++i+DFGl+k+l+ +++     l++ +gts ++APE+l
  CCD23849.1 1083 rriqkllDPIDILSQIGAGVAHLHSLKIIHRDIKPQNILVAiSkkaaakN-QkdtqqvrVMISDFGLCKKLDAEQSsfrtsLNNPTGTSGWRAPELL 1178
                  55566667789*****************************9654555550.15666788**************9999******************** PP

                  TTS CS
     Pkinase  170 ken 172 
                  +++
  CCD23849.1 1179 EDT 1181
                  654 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 5.3e-12
                  HTTSCBSHHHHHHHHHHHHHHHHH.SS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase  169 lkeneyskkvDvWslGvilyellt.gkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264 
                  l++++ ++++D++s+G+++y +l+ g++pf ++  +e   ++++     +++ g   +++ +++ +  ea dl++++++ dpk+R++a  +lqhp++
  CCD23849.1 1218 LTKQRLTRAIDIFSMGCVFYYVLSkGNHPFGARYIRE--GNIIKG---RYDLHG--LKSTLRDRALRVEAADLIEQMISNDPKRRPSAFAVLQHPVF 1307
                  567889*************998753899***333332..333333...233332..24566778899****************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.0   1.3e-21   3.2e-18       4     180 ..     994    1181 ..     991    1188 .. 0.83
   2 !    6.0   0.0    0.0025       6.4     178     253 ..    1219    1299 ..    1215    1304 .. 0.73

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 1.3e-21
                   EEEEEEESSEEEE.EEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT.. CS
  Pkinase_Tyr    4 gkklGeGafGkVv.egtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkk.. 95  
                   +k lG G+ G+Vv +gt +      +  VavK +  +  +       +e+k++++  +h+n+v+++   t ++ l+i +e++++ +L++ ++ k  
   CCD23849.1  994 NKILGYGSSGTVVfQGTFQ------NRPVAVKRMLIDFCDI----ASREIKLLTESdDHKNVVRYYCSETTDKFLYIALELCTS-TLQDLIEMKnp 1078
                   5789999999875266666......99*****996555554....578**********************************86.78998888766 PP

                   ...CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.............TTEEEE-STTTHEETTTSSEE..EETTSSTSGGGGS- CS
  Pkinase_Tyr   96 ...ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.............nkvvkisDfGLardiekddey..vkkeeaklpvkWma 173 
                       ++  +l d +++  q+ +G+++L+s k++Hrd+  +N+L++              +  v isDfGL++++  +++   ++ ++ +    W a
   CCD23849.1 1079 tdeLRRIQKLLDPIDILSQIGAGVAHLHSLKIIHRDIKPQNILVAIskkaaaknqkdtqQVRVMISDFGLCKKLDAEQSSfrTSLNNPTGTSGWRA 1174
                   554455566777889*****************************98889999999998777999**********5555544355556667789*** PP

                   HHHHHHS CS
  Pkinase_Tyr  174 pEslkek 180 
                   pE l+++
   CCD23849.1 1175 PELLEDT 1181
                   ***9986 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0025
                   HHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS..HHHHHHHHH...HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HH CS
  Pkinase_Tyr  178 kekkftsksDvWsfGvllwEiftlgespypgl..kneevlekl...kegkrlekpekcpeelyelmkkcweedpeeRptfs 253 
                   +++++t + D++s G + + ++++g++p+     ++ ++++     +  k   + +    e ++l+++  ++dp++Rp+  
   CCD23849.1 1219 TKQRLTRAIDIFSMGCVFYYVLSKGNHPFGARyiREGNIIKGRydlHGLKSTLRDRALRVEAADLIEQMISNDPKRRPSAF 1299
                   67889999********************86653355555554311133444556667788999999999999999999854 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00011      0.28       9      30 ..     367     388 ..     359     391 .. 0.86
   2 ?   -1.0   0.1      0.78     2e+03       6      17 ..     410     422 ..     406     425 .. 0.74
   3 !    6.8   0.0    0.0026       6.7       3      31 ..     462     490 ..     461     493 .. 0.87
   4 ?   -0.3   0.0      0.48   1.2e+03       2      18 ..     565     582 ..     564     582 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00011
                 TSEEEEEETTTCCEEEEEESSS CS
         PQQ   9 dGylyAlDadTGkvlWrfktgg 30 
                  G l AlD+++G++lW+ ++++
  CCD23849.1 367 EGGLHALDRENGQLLWSIEAEQ 388
                 5899************988775 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.78
                 E.ETTSEEEEEET CS
         PQQ   6 g.sadGylyAlDa 17 
                     dG++y +++
  CCD23849.1 410 EpYGDGNIYYFNV 422
                 3378******997 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0026
                 EEEEETTSEEEEEETTTCCEEEEEESSSC CS
         PQQ   3 vylgsadGylyAlDadTGkvlWrfktggp 31 
                 +y gs+ +  y +Da++G+++  + +g +
  CCD23849.1 462 IYTGSRKTIMYTIDARNGEIISAYGPGTA 490
                 7888888889**************99875 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.48
                 EEEEE.ETTSEEEEEETT CS
         PQQ   2 vvylg.sadGylyAlDad 18 
                 +++++  +d  l+A+Dad
  CCD23849.1 565 GIFIApFRDKSLLAVDAD 582
                 78999999********96 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.7   7.4         7   1.8e+04     187     187 ..     245     245 ..     110     413 .. 0.63
   2 !   19.4   2.7   1.4e-07   0.00036     281     387 ..     929    1179 ..     855    1204 .. 0.68

  Alignments for each domain:
  == domain 1  score: -8.7 bits;  conditional E-value: 7
  Pkinase_fungal 187 E 187
                     E
      CCD23849.1 245 E 245
                     0 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.4e-07
  Pkinase_fungal  281 r............................................................................................ 281 
                      +                                                                                            
      CCD23849.1  929 Eidiqgvaspvpqrlsspilprisspipsrvsspipprasspvpgqirsidginyehvlnnlevsnkilgygssgtvvfqgtfqnrpvavkrm 1021
                      144555555555555566666666677777777777777777777777777777777777777777777777777777777777777777777 PP

  Pkinase_fungal  282 ...........................................lenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHr 331 
                                                                     ++  + +++   ++++ ++ ++ +  l +  +g   L+   +i+Hr
      CCD23849.1 1022 lidfcdiasreiklltesddhknvvryycsettdkflyialelCTSTLQDLIEMKNPTDELRRIQKLLDPIDILSQIGAGVAHLH-SLKIIHR 1113
                      7777777777777777777777777777777777777777776556666667777777777777777777777777778889999.99***** PP

  Pkinase_fungal  332 DiSenNilit........dskkegerkglLiDLDlakelsddssesga..rertGTleFmaievlk 387 
                      Di  +Nil+         ++k++++ + +++D+ l k+l+ ++s+     ++ tGT  + a e+l+
      CCD23849.1 1114 DIKPQNILVAiskkaaakNQKDTQQVRVMISDFGLCKKLDAEQSSFRTslNNPTGTSGWRAPELLE 1179
                      **********777777755566699***************7554443355999**99888888887 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.6e-06    0.0041     123     156 ..    1094    1130 ..    1054    1157 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.6e-06
         Kdo  123 llkavgrliaklhragvnHadlyaknillqqee...e 156 
                  +l ++g+ +a lh++++ H+d+ ++nil+   +   +
  CCD23849.1 1094 ILSQIGAGVAHLHSLKIIHRDIKPQNILVAISKkaaA 1130
                  789**************************98774440 PP

>> PQQ_2  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.9e-05     0.074     131     233 ..     367     481 ..     357     600 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.9e-05
       PQQ_2 131 sgklvaldpkdGkvlWerel.aaprgtsels.rvgdisgrpvva...egtVyassgqgrllaldlatgr.....rl.w.skeissinglpildgdllyv 217
                  g+l+ald ++G++lW+ e    ++  + ++ +   i+ +++v+   +g++y  +  ++l ++ ++  +     +    ++++   +g  i +++ +y+
  CCD23849.1 367 EGGLHALDRENGQLLWSIEAeQFQPLLDVVEpSRSTINETLIVEpygDGNIYYFNVHQGLQKIPVTIRQliltsPMhLkTNIVIDDMG-TIKEDEKIYT 464
                 4667777777777777777777777666666666666666666666444555555555455555555553333322121222333555.5555555666 PP

       PQQ_2 218 vsa.gelialdratGav 233
                 +s+ +  + +d  +G++
  CCD23849.1 465 GSRkTIMYTIDARNGEI 481
                 66346666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1018  (0.0567795); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.95u 0.31s 00:00:01.26 Elapsed: 00:00:00.47
# Mc/sec: 9208.59
//
Query:       CCD23850.1  [L=496]
Description: hypothetical protein NDAI_0C01900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-63  212.2   6.1    4.7e-63  212.2   6.1    2.8  2  ABA_GPCR  Abscisic acid G-protein coupled receptor
    1.5e-16   60.2   0.1    3.5e-16   59.0   0.1    1.7  1  GPHR_N    The Golgi pH Regulator (GPHR) Family N-terminal


Domain annotation for each model (and alignments):
>> ABA_GPCR  Abscisic acid G-protein coupled receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.5  14.1         2   1.8e+04       9     103 ..      34     154 ..      22     177 .. 0.57
   2 !  212.2   6.1   5.3e-67   4.7e-63       6     180 .]     271     490 ..     266     490 .. 0.97

  Alignments for each domain:
  == domain 1  score: -8.5 bits;  conditional E-value: 2
    ABA_GPCR   9 kllkvlgvvfaiYCvyrilktllnllpriil..sssssDplavtlakll.....................lrhfdlkldleals............... 69 
                 k++k ++v+f++  v  +l++ ++l+++     ++ss D+++++l  ++                     +                            
  CCD23850.1  34 KIVKYIRVIFSLAIVCYVLTVEIVLWQIKAAtiENSSADFVTNFLWPMVsaslalvlilcqpflillsllN------------Kffndrfdidrlviit 120
                 55555555555443333333333333332225688888888888877775443333333333333333332............0333333333333556 PP

    ABA_GPCR  70 rqiSllLsgvlllaslssvlttissllrllpssl 103
                   i l+L+++l++  +  +  t ++l++l+   +
  CCD23850.1 121 TSIMLFLILILVFIDVGPFHYTRNILTKLSIAGV 154
                 7777888888887777777777777777766665 PP

  == domain 2  score: 212.2 bits;  conditional E-value: 5.3e-67
    ABA_GPCR   6 llgkllkvlgvvfaiYCvyrilktllnllpriil................sssssDplavtlakll...lrhfdlkldlealsrqiSllLsgvlllasl 85 
                  ++ l ++++v+f+iYCvy+il+t+l ++p++i+                ++ ssDplavt+a++l   l++f++++dl++l+rqiSllLs++l+++sl
  CCD23850.1 271 NIRLLRQIFEVGFIIYCVYKILNTFLLRIPYMITrritnpldpmsadyydQKGSSDPLAVTFANILdifLFRFNYQHDLDSLTRQISLLLSTSLFICSL 369
                 5677899************************999****************889********************************************** PP

    ABA_GPCR  86 ssvlttissllrllpsslqll.........................kssllnLllselmgiYvistllllrsnLPkevssklselLgekptvpn.vidr 158
                 s+v++tis+ll+llp++lq+l                         +s+++nL++sel+giYvi+t+l++rsnLP++vs+kl+elLgek+tvpn  id 
  CCD23850.1 370 STVNMTISYLLELLPIRLQVLamfamqdnetvnelptyksklvhkaPSIIKNLIVSELTGIYVIATTLMVRSNLPFDVSTKLRELLGEKFTVPNvAIDD 468
                 *******************99*************************************************************************99*** PP

    ABA_GPCR 159 wFDkvFllsciltavvilvaer 180
                 wFD++F++sc+lta++i+++e+
  CCD23850.1 469 WFDEIFATSCVLTACFIIFVEK 490
                 ******************9985 PP

>> GPHR_N  The Golgi pH Regulator (GPHR) Family N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.1   3.9e-20   3.5e-16       1      66 [.     139     216 ..     139     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 3.9e-20
      GPHR_N   1 fglieavlsrvsviGvtlmAiLSGfGavstpyetfslf...........krpvt....eadinslearlehtrellaekrk 66 
                 f++++++l+++s++GvtlmAiLSG+++v+t y+tf ++           +   t     +d  + +  +++t+e++ ek k
  CCD23850.1 139 FHYTRNILTKLSIAGVTLMAILSGIATVTTTYYTFLYVwrkyvirnknkS---TlvpsVDDRINQRFVIWATDEDIKEKLK 216
                 789**********************************5455666665541...1444579999999***********9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3519.48
//
Query:       CCD23851.1  [L=1080]
Description: hypothetical protein NDAI_0C01910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-43  147.8  32.7    1.4e-22   80.4   2.6    3.6  3  MIF4G     MIF4G domain
    4.6e-25   88.9  12.3    4.6e-25   88.9  12.3    3.0  3  Upf2      Up-frameshift suppressor 2
  ------ inclusion threshold ------
       0.13   10.5  33.0       0.32    9.1  33.0    1.7  1  Nop14     Nop14-like family


Domain annotation for each model (and alignments):
>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   6.8   7.4e-11   4.4e-07       2     137 ..      35     173 ..      34     265 .. 0.84
   2 !   49.4   7.6   7.4e-17   4.4e-13       4     208 ..     375     556 ..     372     560 .. 0.94
   3 !   80.4   2.6   2.4e-26   1.4e-22       4     203 ..     580     775 ..     577     783 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 7.4e-11
                 HHHHHHHHCHTTTTHHHHHHHHHHHHHCS.CHHHHHHHHHHHHHHHHHCG...GGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC.-S-HHHHH CS
       MIF4G   2 kkvkgilnklskenfevlikqllklamdd.dknelkevielifekaveep...sfsplyarlcgklnsrfqqnFrikllnklqeefekry.elenelee 95 
                 k+++g+++kl+k+ +++   +llk ++++  + +l+evi ++ e+  +++   +++   ++++++l++rf+q+F+  l + ++ +fe+ + e+  + e+
  CCD23851.1  35 KRNTGFIKKLKKGFVKESTPSLLKELSELsLEKYLSEVIATVNEVLYSISnknDDIISAVEIISALHQRFNQRFTCELFQLFLNNFENPTiEK--STEK 131
                 899********9999999999999999996667888888888888888889999**********************************76555..5555 PP

                 HHHHHHHHHHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGC CS
       MIF4G  96 nedgnrrrrlglvrflgelfklkmltskilldclkellsslt 137
                 +e     r ++    l+el+  +++ts    ++ + l   l+
  CCD23851.1 132 EELLRITRLKAKTNILTELYLVGVFTSLENTNSKDALPAYLQ 173
                 5555555555555568********999877766666655555 PP

  == domain 2  score: 49.4 bits;  conditional E-value: 7.4e-17
                 HHHHHHCHTTTTHHHHHHHHHHHHHCS...CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHH CS
       MIF4G   4 vkgilnklskenfevlikqllklamdd...dknelkevielifekaveepsfsplyarlcgklnsrfqqnFrikllnklqeefekryeleneleenedg 99 
                 +++++  l k ++++ i+q++  ++++   +k++++ +++ ++e+  + +s++  yar++++ n++++ ++++ ++ +l   f++           +  
  CCD23851.1 375 INSFFHSLDKIDTKEEIDQISIDYWTSgidNKATRNRLLKFFIET--QDWSKIKVYARFLATTNKYLP-EVTEEFIKYLDNGFRS-----------QLH 459
                 577888889999*******************************96..79*******************.****************...........777 PP

                 HHHHHHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGCCCCSCCHSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHCSSSSHHH CS
       MIF4G 100 nrrrrlglvrflgelfklkmltskilldclkellssltketaddppqdleeieilltllttigktlennekakkeldqffkriqkiledatrqelssri 198
                 ++r    +++f +e+ k+ +++s ++++ +++l+ +            +++ieil+ +l+  gk l n++++k++++++++ iq +++d    +l   +
  CCD23851.1 460 SNRINVKNIIFYSEMMKFMLIPSFMIFHKIRSLILNMLI---------PNNIEILTVFLEHSGKFLINKPELKPQMEKMVQLIQEKKRD---RQLNLNT 546
                 7888899********************************.........67***************************************...8999999 PP

                 HHHHHHHHHH CS
       MIF4G 199 rfmlkdliel 208
                 ++ l+++++l
  CCD23851.1 547 KSALENIMAL 556
                 9999999987 PP

  == domain 3  score: 80.4 bits;  conditional E-value: 2.4e-26
                 HHHHHHCHTTTTHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG.GGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC-S-HHHHHHHHHHH CS
       MIF4G   4 vkgilnklskenfevlikqllklamdddknelkevielifekaveep.sfsplyarlcgklnsrfqqnFrikllnklqeefekryeleneleenedgnr 101
                 + +i+++ls  +    ik l+k+++++   e +  ++++f+k+ ++  +++p+ a+l+++l ++++ +F ik++++ +e++e       +le n + ++
  CCD23851.1 580 RILIRSELSNIDPRYAIKILRKAHWEN--PETTRTLFSLFTKPGKINyQNLPTMAKLLNGLFTYHR-EFIIKCIDQILENIEG------GLETNLYAEN 669
                 5677777777777778999*******9..5566666677777766666******************.****************......********** PP

                 HHHHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGCCCCSC........CHSCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHCS CS
       MIF4G 102 rrrlglvrflgelfklkmltskilldclkellssltketad........dppqdleeieilltllttigktlennekakkeldqffkriqkiledatrq 192
                 r+r ++v++l+e+f+++m++s++ll  l+ +l++++++ ++        dpp+++++i++ +t l +  + + +  k+ k    ff+++ + +++    
  CCD23851.1 670 RHRVANVKYLTEIFNMEMIKSDVLLAKLYQILQFGHQNGQPnpfslnelDPPDNYFRIQLTTTALLSLKRFPSTLLKKLKIFLPFFDYYIFTKNQ---- 764
                 *************************************9999******************************998888888999999999999885.... PP

                 SSSHHHHHHHH CS
       MIF4G 193 elssrirfmlk 203
                  l+++++f++ 
  CCD23851.1 765 PLPKEVEFRII 775
                 78888888765 PP

>> Upf2  Up-frameshift suppressor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.6      0.99   5.9e+03      63      87 ..     839     863 ..     809     866 .. 0.45
   2 ?   -2.2   0.2       1.1   6.5e+03      62      82 ..     905     925 ..     892     933 .. 0.48
   3 !   88.9  12.3   7.6e-29   4.6e-25      11     136 .]     955    1076 ..     915    1076 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.99
        Upf2  63 esesssekaaeeaeeepeaekskkv 87 
                  se +++ +++ ++ee+e+e+++ +
  CCD23851.1 839 MSEDKDTGESAGDSEEEEEENDEGI 863
                 2223333333334444444444555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
        Upf2  62 eesesssekaaeeaeeepeae 82 
                 +es+ +++++++++++++e+e
  CCD23851.1 905 SESNDTDDDNDDSDDGSNEDE 925
                 333333444444444444443 PP

  == domain 3  score: 88.9 bits;  conditional E-value: 7.6e-29
        Upf2   11 k.evdpeeeeeFerelakmmaeslesrknerkkapqldvplPmnvkkkkkkaeesesssekaaeeaeeepeaekskkvaFtLLtkkgnKqqtktlev 106 
                  k e++++ e+e+e++++++++es+e+rk+e+++      ++Pm  +  +k+ +   + +++++ + ++   +ek++kv+Ft+L ++g+K+q+++le+
  CCD23851.1  955 KaEEERKVEDELEKQFKQILQESMETRKTEKSS----GGKIPMIGNIPNKQ-DIIPIATKDNDIARQPAYVSEKPNKVKFTFLARSGKKTQSRQLEL 1046
                  135566**************************7....89******944444.34455566666777778889999********************** PP

        Upf2  107 PsdsslaqstreqeeaekeEkeriKrlvLn 136 
                  P++ ++++ ++e+ee+ k E+e+i+++vL+
  CCD23851.1 1047 PTNIKFVSDVLEEEERLKSEREKIRKIVLQ 1076
                  *****************************7 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  33.0   5.4e-05      0.32     288     453 ..     833    1001 ..     828    1069 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 5.4e-05
       Nop14  288 eeRlkRMrgeedeeeeeekkkkkkke.....asaDdldddfvleeeeeeeefglgkgl..kataeeeeeededdfeedddlveseseeeeeeeeede 377 
                  ++Rl+ M+ ++d+ e +++++++++e     +  Dd dd+  l+ +++e++    ++l  +++ ee++e+d++++++d d+++++s++ ++e+e+d+
  CCD23851.1  833 NARLQNMSEDKDTGESAGDSEEEEEEndegiEFPDDSDDEATLNINDDEDTER-VRDLhgGSEGEESGENDSSSESNDTDDDNDDSDDGSNEDESDK 928 
                  57999999994444444444444333344453346666666655444444333.2333232134444666666666666666666666666777777 PP

       Nop14  378 eeeedeeeeeeeeededdlsdlese.eeeeedeleeelleeekkaaeekkekkkkkkkseekakeelpytfpcPesh 453 
                  ee+  + +++ + e +    + +++ + eee ++e+el+++ k+  +e+     ++ k+e+++  ++p + ++P++ 
  CCD23851.1  929 EEDFRDIDADRNAELKRMYGEYKKKlKAEEERKVEDELEKQFKQILQES----METRKTEKSSGGKIPMIGNIPNKQ 1001
                  7666665555333333333333333333344443333333333333322....334555555566677777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1080 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2015  (0.112388); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.03u 0.35s 00:00:01.38 Elapsed: 00:00:00.48
# Mc/sec: 6709.90
//
Query:       CCD23852.1  [L=385]
Description: hypothetical protein NDAI_0C01920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-30  105.2   0.0    4.9e-30  104.9   0.0    1.1  1  SpoIIE       Stage II sporulation protein E (SpoIIE)
    7.3e-09   35.6   0.5    9.8e-05   22.1   0.1    2.1  2  PP2C         Protein phosphatase 2C
     0.0015   16.7   0.1     0.0019   16.4   0.1    1.2  1  Reovirus_M2  Reovirus major virion structural protein Mu-1/Mu
  ------ inclusion threshold ------
      0.019   16.0   1.2      0.019   16.0   1.2    2.4  2  PPC          Bacterial pre-peptidase C-terminal domain


Domain annotation for each model (and alignments):
>> SpoIIE  Stage II sporulation protein E (SpoIIE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   1.1e-33   4.9e-30       3     192 ..     138     384 ..     136     385 .] 0.96

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 1.1e-33
                 TEEEEEEEECSS....SSHHHHHHHHHHHHHHHHHHHTTTS............HHHHHHHHHHHCHCTTSTT.TTCEEEEEEEETTTTEEEEEEESSSS CS
      SpoIIE   3 grlalvvgDvvG....hGleAalimgllrsalrelatagle............paevlkrlnralardleeeerfaTavlavydpstgkleyanaGhpp 85 
                 +++ ++v+D+vG    + +++++i+++l+ a+++lata+l             p+++++ + +++++d   e+ ++T ++a+ + ++g+l +an+G+++
  CCD23852.1 138 NDVYAGVADGVGgwaeRNYDSSAISRELCRAMDQLATATLVssknqkysdvisPKDLMDVAFEKIQNDKIVEVGGTTSIVAH-FQKNGTLNVANLGDSW 235
                 68999********************************99999***********************999999999********.89999*********** PP

                 EEEEETTS...TEEEEE--SS--..TTTSSS..................T-EEEEEEE--TTEEEEEESCCCCSSS.HHHHHHCCCHHCHHHHCT.... CS
      SpoIIE  86 pllvrpdg...gtklllastglp..lGilpe..................adyetaelelepgdtlllyTDGvtEar.dsdgelfgkerllallasaege 160
                 + ++r+ +   +tk++++++++p  l+i+p+                  ad+++++++l ++d+++l+TDGvt++  ++d  lf k++  +l +s+e  
  CCD23852.1 236 CGVFRNYKlvfQTKFQTVGFNAPyqLSIIPKhlleearlkgtsyirntpADVDEYSFQLSQNDIVILATDGVTDNIsTDDISLFLKDNSEKLSTSKE-- 332
                 ******88**********************************************************************************9999776.. PP

                 .HCCHHHHHHHHHHH.....................HTTSSSSS-EEEEEEEE CS
      SpoIIE 161 sleelldalveelle.....................lgsgeleDDitllvlrv 192
                  l ++ + +v+++++                     l++g++eDDit+++++v
  CCD23852.1 333 -LNAMTKDFVSKVVNlskdpdypsvfsqeysrltgrLYKGGKEDDITVVLVKV 384
                 .999999999999999999********************************98 PP

>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   2.2e-08   9.8e-05      24     129 ..     129     241 ..     108     252 .. 0.76
   2 !   11.9   0.0   2.9e-05      0.13     195     245 ..     286     337 ..     266     345 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.2e-08
                 CTCTTCCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTH........HHHHHHHHHHHHHHHHHHHHHHHHC.HCCT-EEEEEEEEEETTE CS
        PP2C  24 nlesssgkssvsffavfdghggseaakyarehleeilksqksfeele........kleqalrksfladtdeelksskant.epsksGstavvalirgtk 113
                 n+   s +s++ + +v dg+gg   ++y+++ + + l +  +    +        k++++++   l   d  +++ ++n+   +  G+t++va ++++ 
  CCD23852.1 129 NFFIASIDSNDVYAGVADGVGGWAERNYDSSAISRELCRAMDQLATAtlvssknqKYSDVISPKDLM--DVAFEK-IQNDkIVEVGGTTSIVAHFQKNG 224
                 33334778999999********************666555555555557777778888888888888..666666.66654688999999999999999 PP

                 .EEEEEESS-EEEEEET CS
        PP2C 114 .lyvAnvGDSravLcrk 129
                  l vAn+GDS + ++r+
  CCD23852.1 225 tLNVANLGDSWCGVFRN 241
                 9*********8876665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.9e-05
                 EEEEEEE-TT.EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHH CS
        PP2C 195 dvtsvkltee.defliLacdGlwdvlsdqeavdlvrdelekkkspeevaeel 245
                 dv + +++ + ++ +iLa+dG++d +s +++  + +d+ ek ++ +e++  +
  CCD23852.1 286 DVDEYSFQLSqNDIVILATDGVTDNISTDDISLFLKDNSEKLSTSKELNAMT 337
                 5556666767799*************************99977666666555 PP

>> Reovirus_M2  Reovirus major virion structural protein Mu-1/Mu-1C (M2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   4.3e-07    0.0019     583     643 ..     286     346 ..     169     349 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.3e-07
                  GGBTT-TTTTSHHHHHHHHHHHHHHHHT-BS---HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Reovirus_M2 583 ilqvavPvlsdsgilsaltsGvktalrtkslgkGvkdassklsaresltvakqafldkvse 643
                   +      ls+++i++  t+Gv+  + t+ ++  +kd s+kls+++ l+ +++ f+ kv +
   CCD23852.1 286 DVDEYSFQLSQNDIVILATDGVTDNISTDDISLFLKDNSEKLSTSKELNAMTKDFVSKVVN 346
                  4555555699************************************************976 PP

>> PPC  Bacterial pre-peptidase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4      0.86   3.8e+03      41      49 ..      77      85 ..      62     113 .. 0.57
   2 ?   16.0   1.2   4.3e-06     0.019       1      40 [.     286     329 ..     286     365 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.86
                EE-STT-TT CS
         PPC 41 ydansapsg 49
                 +++s++++
  CCD23852.1 77 HNNYSNSTN 85
                333332222 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 4.3e-06
                 -EEEEEEEE-TT-EEEEEES-TT.......SEEEEE-TT..-SS- CS
         PPC   1 dvDvysfevpagdsltididggti.....dldLylldsngtsvaa 40 
                 dvD ysf ++ +d +++++dg t      d +L+l d++  ++++
  CCD23852.1 286 DVDEYSFQLSQNDIVILATDGVTDnistdDISLFLKDNS-EKLST 329
                 89*********************9996666669999998.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2637.23
//
Query:       CCD23853.1  [L=432]
Description: hypothetical protein NDAI_0C01930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.056   13.6   0.6       0.52   10.5   0.1    2.6  2  Trp_repressor  Trp repressor protein
       0.78    9.9   7.0       0.41   10.8   4.0    2.0  2  Nmad5          Nucleotide modification associated domain 5


Domain annotation for each model (and alignments):
>> Trp_repressor  Trp repressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   5.8e-05      0.52       4      53 ..      42      89 ..      39      93 .. 0.93
   2 ?   -0.1   0.0      0.11     1e+03      11      27 ..     374     390 ..     371     395 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 5.8e-05
  Trp_repressor  4 dallelilkleneeeleellelllTpdErealaqRlqvvkeLLkeelsqr 53
                   d l+ +i+++ nee++++ l+  ++ + ++ + +R  + +  L+  lsq+
     CCD23853.1 42 DRLFCAICQAANEEKMNQVLKRSISYNAVNNVKKRTSITN--LHRTLSQT 89
                   67999***********************************..99999886 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.11
  Trp_repressor  11 lkleneeeleellelll 27 
                    ++++n+e+ e+++++l+
     CCD23853.1 374 KHHNNTEKKENFFDMLA 390
                    578999********996 PP

>> Nmad5  Nucleotide modification associated domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.19   1.7e+03      39      85 ..      31      78 ..      22     126 .. 0.62
   2 ?   10.8   4.0   4.6e-05      0.41       3     145 ..     131     275 ..     129     297 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.19
       Nmad5 39 vrldalggkkteaalreiikei.eklqsklpkeglstnkpkstgsvid 85
                +r +a +++  ++  ++i ++  e++++++ k ++s n +++ ++   
  CCD23853.1 31 IREEAEPCELHDRLFCAICQAAnEEKMNQVLKRSISYNAVNNVKKRTS 78
                666777777777777777765526788888888888877333333332 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4.6e-05
       Nmad5   3 LTkdirdqIvanaLkkhgiaekekalrkeradlaeevrldalggkkteaalreiikeieklqsklpkeglstnk...pkstgsvidvnlaGarvelyfn 98 
                 L k  rd +va+a++k  ++++++++  +  +l ++  +  ++ k  ++ +r++++   +l s+ pk   + +     ++ ++    +l  + +e  + 
  CCD23853.1 131 LPKETRDIFVAKAMAKNKHKDQARQIHPDIIELLQSQKQNPHR-KVHTSTWRNRKSDYMQLFSDHPKDIPNRRAqniTEILNQFCAYDLTDSEREYIIH 228
                 66889*********************************99999.99**********************7766667777777777888888778888888 PP

       Nmad5  99 gkkletvvlasvdeiaketkslpkvvleadnplvkrfdelekaqeel 145
                 + k + +++ +++e +++t++ ++  + a++++ ++ ++   a+  l
  CCD23853.1 229 KLKARQQKPPEEEEGKRCTNTVEENIFLAHHQFKDKTKDTSVADPYL 275
                 89*******************************98887765554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1206  (0.0672653); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3067.45
//
Query:       CCD23854.1  [L=407]
Description: hypothetical protein NDAI_0C01940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-20   74.4   0.0    2.6e-20   74.0   0.0    1.1  1  Abhydrolase_6  Alpha/beta hydrolase family
    6.6e-14   52.2   0.0    9.8e-14   51.6   0.0    1.2  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.8e-07   30.7   0.0    3.3e-07   29.8   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0019   18.1   0.0     0.0044   16.9   0.0    1.6  1  Lipase_3       Lipase (class 3)
     0.0066   16.2   0.0      0.012   15.3   0.0    1.5  1  PGAP1          PGAP1-like protein
  ------ inclusion threshold ------
      0.034   13.6   0.1      0.071   12.6   0.1    1.5  1  DUF676         Putative serine esterase (DUF676)
       0.05   13.1   0.1      0.084   12.4   0.1    1.3  1  LIDHydrolase   Lipid-droplet associated hydrolase
      0.053   13.1   0.0       0.22   11.0   0.0    1.8  2  DUF2974        Protein of unknown function (DUF2974)
      0.094   12.6   0.0       0.42   10.5   0.0    1.8  2  VirJ           Bacterial virulence protein (VirJ)


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   1.3e-23   2.6e-20       2     216 ..     117     376 ..     116     378 .. 0.70

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 1.3e-23
                    EEE--GC.....GCHHHHHHHHCCT....CEEEEE--TTST....S-GGCS--HHH...CHHHHHHHCCTT................TTSE..EEE CS
  Abhydrolase_6   2 lllHGagssassWlvapLaallaag....vhvlapDlpGhG....rsdpppldled...ladlaalldelaa..............gggpv..vlv 70 
                    ++ HGagss+ s++  +La+   ++    + ++++D++GhG     ++++p ++ +   ++d+  l++ + +               +  +  +lv
     CCD23854.1 117 IFHHGAGSSGLSFA--NLAKEVYERssgkCGCFSFDARGHGktvpIDPTKPISYGReifVQDFKSLITWFYQtqlieifsskqnekKH--IslILV 208
                    799**********7..6644444444446888*********66555588999999998889999999999999999999999985444..356*** PP

                    EETCHHHHHHHHHHCC.....EE.EEES-..----TTT................S----TTHHHHHHTT-CCCCHCCH....S-HSCCCCHHHC.. CS
  Abhydrolase_6  71 GHSlGGalalaaapla...lvvg.vlldppptalpagl................laaalelllallallrllawlsre....plprlfladeda.. 140
                    GHSlGG++ +++ p++   + ++ vl  +   ++++ +                 + a++ ++ +++++++  +++++    ++ ++++a+++   
     CCD23854.1 209 GHSLGGSICTFVHPSLdkmI-RShVLGVA---MFDIVEeaailalekvdhflknTPNAFNSYEDAIGWYMKHKLSRTKtsaeIAVPSLFAPVEGdt 300
                    ***********777779853.33588888...5555553333322222222223333333333333333333333222666767779999888523 PP

                    .CCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGC.EEECTT-CHHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHH CS
  Abhydrolase_6 141 .daawrarlarlaallaglgllpaaawadlpvpl.lvlggeDplvprllerllaqagarlpvvlpgaGHlphleepde 216
                     +++  ++l + +++++ +++   + + +lp++  l+l+g+D+l ++l+   ++  +++l vv+ ++GH++++++p +
     CCD23854.1 301 sQVTRITNLKDFSPYWSTWFTDLSHSFVTLPTAKlLILAGDDRLDKELIIGQMQ-GKYQL-VVFQDSGHFIQEDSPMK 376
                    466666666666677777776667777777777745559*********999999.*****.************99955 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   4.9e-17   9.8e-14       4     256 ..     117     373 ..     114     374 .. 0.88

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 4.9e-17
                    EEE-STTTCGGGGTTGHHHHHHHHT...TSEEEEEEETTSTTSSSTTTGB.............CHHSHHHHHHHHHHH....HHHCTTSSEEEEEE CS
  Abhydrolase_1   4 vilhGlpgssdvwaerglapaLakd...gfdvillDlrGvgySspapacin............ddygtasvaddldri....ldalgddkltlvGh 80 
                    +++hG + s+ ++a+  la+   ++   ++ ++ +D rG+g++ p   + +            +   t+ ++  l  i    ++  +  +l+lvGh
     CCD23854.1 117 IFHHGAGSSGLSFAN--LAKEVYERssgKCGCFSFDARGHGKTVPIDPTKPisygreifvqdfKSLITWFYQTQLIEIfsskQNEKKHISLILVGH 210
                    789999999999999..99999999******************8888877799999999955544478877777776667778999999999**** PP

                    THHHHHHHHHHHHHGGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHH.HHH CS
  Abhydrolase_1  81 SmGGmialayaaeyperVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfps.sgs 175
                    S+GG i++ +    ++ +++ vl  a   +   +ea+  +++++  f+ ++ +++    ++  +  +++++++ ++++ a   p+ +   +   ++
     CCD23854.1 211 SLGGSICTFVHPSLDKMIRSHVLGVA--MFDIVEEAAILALEKVDHFLKNTPNAFNSYEDAIGWYMKHKLSRTKTSAEIAV--PSLFAPVEGdTSQ 302
                    ****************9***999999..9999*************************************************..9999998885444 PP

                    HHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 176 dnasslatgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafleg 256
                     +++++    + ++++w t++s+++            + l++ + +D+l+++  + +++++    +lvv++d+gH+++ + 
     CCD23854.1 303 VTRITNLKDFSPYWSTWFTDLSHSFVTLPTA------KLLIL-AGDDRLDKELIIGQMQGK---YQLVVFQDSGHFIQEDS 373
                    55666666666***************99998......77776.55*************988...9************9986 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.6e-10   3.3e-07       8     117 ..     117     244 ..     113     294 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.6e-10
  Hydrolase_4   8 vlvHGlaehsgryaelaeaLaaqG...favyalDhrGhGrse..........gkrghvpsfddyvdDlaaf..vekvkeehpel...plfllGhSmGG 87 
                  ++ HG +++   +a+la++  ++      ++ +D+rGhG++           g+   v++f+++++ + +   +e + ++++e+    l+l+GhS+GG
   CCD23854.1 117 IFHHGAGSSGLSFANLAKEVYERSsgkCGCFSFDARGHGKTVpidptkpisyGREIFVQDFKSLITWFYQTqlIEIFSSKQNEKkhiSLILVGHSLGG 214
                  6789****************99862236899**************9999999999999999998765543222455553333333559********** PP

  Hydrolase_4  88 liallyllrypdkvaglilsaPalkikakl 117
                   i + +     + ++  +l  ++++i ++ 
   CCD23854.1 215 SICTFVHPSLDKMIRSHVLGVAMFDIVEEA 244
                  **9999888888888999999999988664 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.2e-06    0.0044      44      83 ..     182     221 ..     156     236 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.2e-06
                 HS-HHH.HHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHH CS
    Lipase_3  44 eeslre.qvlkelkrllekypeysivvtGHSLGgalAlLaa 83 
                 + ++++ q+ + +++  ++++ +s++++GHSLGg++ +++ 
  CCD23854.1 182 T-WFYQtQLIEIFSSKQNEKKHISLILVGHSLGGSICTFVH 221
                 4.44440444555555556668*************998765 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   6.1e-06     0.012      82     118 ..     192     231 ..     164     266 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.1e-06
       PGAP1  82 ly..sssekeptsviliGHSmGGivaraa.ltlknyikqs 118
                 ++  +++ek+  s+il+GHS+GG +   +   l+++i ++
  CCD23854.1 192 IFssKQNEKKHISLILVGHSLGGSICTFVhPSLDKMIRSH 231
                 23435677778899*********99843312344455555 PP

>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   3.6e-05     0.071      67      96 ..     189     220 ..     177     241 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.6e-05
      DUF676  67 vlevvkkkkdknkkiSf..vghSlGgliaraa 96 
                 ++e++ +k++++k+iS+  vghSlGg i +++
  CCD23854.1 189 LIEIFSSKQNEKKHISLilVGHSLGGSICTFV 220
                 56777777777788885338******999875 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   4.2e-05     0.084      69     108 ..     187     226 ..     183     258 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.2e-05
  LIDHydrolase  69 edflkellekaksekdvklilvGHSvGaYialevlkrlse 108
                    ++++ + +k++++k++ lilvGHS G  i   v  +l +
    CCD23854.1 187 TQLIEIFSSKQNEKKHISLILVGHSLGGSICTFVHPSLDK 226
                   566777777799***************9998877765555 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.58   1.2e+03      56     124 ..      80     154 ..      72     162 .. 0.62
   2 ?   11.0   0.0   0.00011      0.22      82     120 ..     201     239 ..     185     249 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.58
     DUF2974  56 dfnmafrsevpaqesAlkYlnkileeseg.....kiylgGhSkGGnlAvyaamnaeddlqeris...kiysfDgpGf 124
                  fn  f+ +++ +++ + Y +++++ s+      +iy+  h  G +   +a +   +++ er s    ++sfD+ G 
  CCD23854.1  80 QFNTYFTLPTSHKNNSVTYSENLTTSSSTadctiPIYIFHHGAGSSGLSFANLA--KEVYERSSgkcGCFSFDARGH 154
                 578888899999999999999988777766676667776665555433333332..222222221114667777665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00011
     DUF2974  82 segkiylgGhSkGGnlAvyaamnaeddlqeriskiysfD 120
                  + +++l+GhS GG++ +++   +++ +++++  +  fD
  CCD23854.1 201 KHISLILVGHSLGGSICTFVHPSLDKMIRSHVLGVAMFD 239
                 233589***************************999998 PP

>> VirJ  Bacterial virulence protein (VirJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00021      0.42      57     109 ..     192     244 ..     185     260 .. 0.83
   2 ?   -0.8   0.0       0.6   1.2e+03     134     189 ..     328     386 ..     320     389 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00021
        VirJ  57 likkyakrwkkkkvvliGysfGaDvlPaaynkLkaatrdkvklvsllalskka 109
                 + +  +++ k+ +++l+G+s G  +  ++   L++  r++v  v+++ + ++a
  CCD23854.1 192 IFSSKQNEKKHISLILVGHSLGGSICTFVHPSLDKMIRSHVLGVAMFDIVEEA 244
                 445555566677899**************************999999877665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.6
        VirJ 134 akldakrvvCiyGkdekd..eacpelkakgvevvklpGghhfdedy.ealakailealk 189
                  +l++++++ + G d  d      +++ k   vv  + gh  +ed   + a ++le +k
  CCD23854.1 328 VTLPTAKLLILAGDDRLDkeLIIGQMQGKYQLVVFQDSGHFIQEDSpMKTALTLLEFWK 386
                 56677777777777755530333444444444556667777777642556667777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2923.86
//
Query:       CCD23855.1  [L=714]
Description: hypothetical protein NDAI_0C01950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-46  158.1   0.0    3.3e-46  157.7   0.0    1.2  1  CN_hydrolase  Carbon-nitrogen hydrolase
      1e-21   77.2   0.0    3.2e-21   75.6   0.0    1.7  1  NAD_synthase  NAD synthase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.7   0.0   3.7e-50   3.3e-46       2     260 ..       7     282 ..       6     283 .. 0.96

  Alignments for each domain:
  == domain 1  score: 157.7 bits;  conditional E-value: 3.7e-50
                   EEEEEBB-STTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTBSSSHHHHHHHHB....HSSSHHHHHHHHHHHHHTEEEEEE..EEEEEC.CTTE CS
  CN_hydrolase   2 vAvvQlpqkaadleanlqklleliaeAarkgadLivlPElfitgykeeahfleaAe....aglgetlallaalarkngiavvig..lierel.tngk 91 
                   +A + l+q+a d+e+n +++le i+ A+++ga+L v PEl itgy + +hfle++     +   e+ a++ + +++++i++ ig  ++++++ +n++
    CCD23855.1   7 LATCNLNQWALDFEGNRDRILESIRIAKERGARLRVGPELEITGYGCLDHFLENDLclhsW---EMYAQIIKDPKTHDILLDIGmpVLHKNVrYNCR 100
                   899*****************************************************85555...999*****************66666666***** PP

                   EEEEEEEEEEETTSEE...EEEEE-SS--EECTTSCECCGHHTSCS.............-SSS-EEEETTEEEEEEEGGGGGSHHHHHH.HHHTT-S CS
  CN_hydrolase  92 lqayntavlldldgkl...vgkyrKlhLfpgeprpptaverelfep.............gdgipvfdtpvgkiGaaiCyeigfpellra.lalkgae 171
                   l    + +l+ + + +    g+yr+++ f + + +p++ve  +++p             gd  +v++t  ++iGa+ C+e + p++  + ++l+g+e
    CCD23855.1 101 LLSMDGKILFIRPKIWlanDGNYREMRFF-TPWLKPGVVEDFVLPPeiqkvtgqksvsfGD--AVIETLDTCIGAETCEELFTPQSPNIaMSLDGVE 194
                   ***************************99.89*****************************..************************999******* PP

                   EEEEBH.GCCCTCHHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTE...EEEEEEEHHHHHHHH CS
  CN_hydrolase 172 ilvnlserapvpksmgppqwellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeeg...vliaeidladvratr 260
                   i++n s++++++ ++  + ++l+ +a + ++g++ ++anq g+  ++++ ++ ++a+i+ +G+++a+ ++++ +   v++a++dl++vr++r
    CCD23855.1 195 IITN-SSGSHHELRKLNKRLDLILNATSRCGGVY-LYANQRGC--DGDRLYYDGCALIAVNGKVVAQGSQFSLKdveVVTATVDLESVRSYR 282
                   ****.889**************************.********..***************************99999*************98 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   3.6e-25   3.2e-21       8     199 ..     343     605 ..     340     619 .. 0.87

  Alignments for each domain:
  == domain 1  score: 75.6 bits;  conditional E-value: 3.6e-25
                   HHHHHHHHCTTSEEEEEE-SSHHHHHHHHHHHHHH....................................TCGEEEEEE--SSSTTHHHHHHHHHH CS
  NAD_synthase   8 flkeyvkkagakgvvlGlSGGvDSslvaalavkal....................................gkenvlalllPssvsseedvedalal 68 
                   +l +y+++++ +g  l lSGG+DS  +a++  ++                                      ++ +++  + +++ss e  + +++l
    CCD23855.1 343 WLWDYLRRCNGTGYFLPLSGGIDSCATAMIVHSMCrlvvkevsegnqqviydvrkltrssddwiptdpqelASKFFHTCFMGTENSSIETRTRSKEL 439
                   7889********************999987666666677*****************************99999999********************* PP

                   HHHHTSEEEE---HHHHHHHHHHHHHHH..............-HHHHHHHHHHHHHHHHHHHH..........HHHTEEEB---BHHHHTTT-S-TT CS
  NAD_synthase  69 aenlgievktidikpivrafeqelkeak..............edlakgNlkaRiRmailyaia..........nklnllvlgTgnksElvvGyfTky 141
                     ++g     +++++ v+++ + ++ a+              e+la +N++aR+Rm++ y +a          n  +llvlg  n  E + Gy Tky
    CCD23855.1 440 SRHIGSYHVDLNMDSLVTSVVSLFEVATgkkpiykifggsqtENLALQNIQARLRMVLAYLFAqllpwvrgikNAGGLLVLGSANVDECLRGYLTKY 536
                   **************999999997777767788999999999999*****************99333333322234578******************* PP

                   TTT--SBETTTTS-HHHHHHHHHHTT....--..HHHHCS--B--S.....STT-BHHHHHSS-HHHHH CS
  NAD_synthase 142 GDgaadlapiaellKtevkeLakeln....vP..ervlkkpPsAdL.....kpgqtDeeeLgikYdelD 199
                      +ad++pi+++ Kt+ k+  ++      +P  ++ l+  P+A+L        q+De+++g++Y+el 
    CCD23855.1 537 DCSSADINPIGGISKTDLKRFIAYASkeyeMPllQEFLDATPTAELepttkDYVQSDEKDMGMTYEELS 605
                   ********************9999888888554489**********766554569***********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4919.32
//
Query:       CCD23856.1  [L=974]
Description: hypothetical protein NDAI_0C01960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.1e-102  342.7   5.9     2e-101  339.5   5.9    2.3  1  Oxysterol_BP  Oxysterol-binding protein
    2.2e-33  114.4   0.6    2.2e-33  114.4   0.6    2.6  2  PH_8          Pleckstrin homology domain
    3.2e-06   27.6   2.0    1.1e-05   25.8   0.7    2.8  2  PH            PH domain
      0.001   19.2   0.3     0.0045   17.1   0.3    2.1  1  PH_3          PH domain
  ------ inclusion threshold ------
        1.8    9.1  13.3        1.4    9.4   4.9    4.1  3  PH_11         Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.5   5.9  5.6e-105    2e-101       1     373 []     619     960 ..     619     960 .. 0.94

  Alignments for each domain:
  == domain 1  score: 339.5 bits;  conditional E-value: 5.6e-105
                   HHHCCHTTSTT-BCCCS---GGGEEEEEHHHHHHHCCTTCHHHHHHHC.SSHHHHHHHHHHHHHHCCCGCT..STSSSEEE---TT-EEEEEETTCE CS
  Oxysterol_BP   1 slwsilkkciGkDLskislPvffneplSlLqrlaedleyselLdkaakeddsleRlayVaaFalSsyasti..krrlkKPFNPlLGEtfelvredkg 95 
                   sl+s+l+k++GkDL++i+lPv+ nep+++Lq+++e ++y++lL+++++   ++  + +V+ Fa+S ++  +  +r+l+KPFNPlLGEt+elv+++ g
    CCD23856.1 619 SLLSFLRKNVGKDLTSIALPVTSNEPITILQMISESFQYASLLTNVVSGPPEFPPITAVTLFAISFLSVHRdkTRALRKPFNPLLGETYELVQDELG 715
                   699*********************************************888**************99998888899********************* PP

                   EEEEEEEEETTTTEEEEEEEECTEEEEEEEEEEEEE-SSEEEEEE-SEEEEEEEEESEEEEEEE--EEEEE-TTTTS-EEEEEEEEEEEETTT--EE CS
  Oxysterol_BP  96 frfiaEQVsHhPpvsAfhaesegweldgeikvkskflgkslevkpeGtahlellkksgehYtwtkpttivhniivgklwvelsgeveitnhstgdka 192
                   fr+iaE+VsH+P + Afhae+++we++ ++++++kf+gks+e++ eG++ l+l k++ge ++w++ptt+++n+i+g+ +ve  +++e+  +s+g+ka
    CCD23856.1 716 FRLIAEKVSHKPQIFAFHAEHNDWECNYTVTPTQKFWGKSIELNNEGVFKLKL-KATGELFEWEQPTTMLKNLIAGERYVEPINDFEVI-SSNGSKA 810
                   *****************************************************.78*********************************.689**** PP

                   EEEEE---SSS---SSEEEEEEEETTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT-BSXXGCGSSTTBCCCCCCH---.--...GGG--HHH CS
  Oxysterol_BP 193 kleFkkkglfsskksnkvegkvkdkkkevlyeisGkwdeelyikkkktekkeeeedasekskvkekeeqeefeseklWkaspl.pkaeeyygftkfa 288
                   k++F++ g+f s++s+ v++ +++k+k+++ ++ Gkw+e+l+    kt                         ++ lWk +pl ++++++ygft+f+
    CCD23856.1 811 KIDFERTGMF-SGRSEAVNVSIMNKEKKEISQVVGKWSESLKD--GKT-------------------------KKILWKPDPLlKDSKKKYGFTQFS 879
                   **********.599**************************876..444.........................579*******999999******** PP

                   HCCT---.TT.GGS-TTBGGG-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT----SSEEEEETTTTSSCEEEC-S-HHH CS
  Oxysterol_BP 289 vtlNeieeke.kslaptDsRlRpDqraleegdideAeeeKkrlEekQRerrkereekkewkpkwFekekdpdtgeevwkykgeywe 373
                    +lNei++ e ++l+ptDsRlRpD r +e+gd+ +Ae+ K +lE+kQRerr ++++    kp++F+k++   ++ ++++  ++ywe
    CCD23856.1 880 ANLNEITDIErDMLPPTDSRLRPDVRSYENGDVTKAEALKLELEQKQRERRNKKQD---AKPRYFKKDSL--NNWKYIEGPNSYWE 960
                   ********888***************************************998655...5*****88764..44555555889996 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.6   6.1e-37   2.2e-33       1      86 [.     216     301 ..     216     303 .. 0.98
   2 ?   -0.3   1.2      0.38   1.4e+03       5      22 ..     927     944 ..     924     963 .. 0.80

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 6.1e-37
        PH_8   1 gillkkrrkklqgyakRfFvLdlksstlsYyrddnssalrgkiplslaiisaneekreiiidsGaevWeLkasnekdfqeWveale 86 
                 g llkkrrkklqg++kRfF+Ld+k++tlsYy +d++++ rg+i +sl+ +san+++r iiidsG+evW Lka+++k++q+Wv+al+
  CCD23856.1 216 GYLLKKRRKKLQGFKKRFFTLDFKYGTLSYYLNDHNQTCRGEIVISLSTVSANKKDRLIIIDSGMEVWALKATDTKNWQNWVDALQ 301
                 689*********************************************************************************98 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.38
        PH_8   5 kkrrkklqgyakRfFvLd 22 
                 + rr k+q+ + R+F+ d
  CCD23856.1 927 RERRNKKQDAKPRYFKKD 944
                 568999999999***865 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.7   3.2e-09   1.1e-05       3     103 ..     214     303 ..     212     305 .. 0.85
   2 ?   -2.4   0.0       1.9   6.7e+03      32      60 ..     859     892 ..     850     910 .. 0.73

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3.2e-09
                 EEEEEEEETSSSSCSEEEEEEEEETTE..EEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHH CS
          PH   3 keGwLlkkgsgkkkswkkrwfvLkdse..llyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWika 99 
                  +G+Llkk+ +k  ++kkr+f+L+ +   l+yy nd   ++ + +g+i +s  +v+        k++  + +  +  +g +++ l+a++    ++W+ a
  CCD23856.1 214 LQGYLLKKRRKKLQGFKKRFFTLDFKYgtLSYYLND---HNQTCRGEIVISLSTVS------ANKKDRLIII--D--SGMEVWALKATDTKNWQNWVDA 299
                 68**9999999999**********66678*******...****************8......3445544444..2..335******************* PP

                 HHHH CS
          PH 100 iqsa 103
                 +qs+
  CCD23856.1 300 LQSC 303
                 **97 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.9
                 EESST.....TCTTESSEEEEEESTTEEEEEEEC CS
          PH  32 yyknd.....ksekdkepkgsislsncevvevva 60 
                 ++k+d     +++k    + s +l+++++ e++ 
  CCD23856.1 859 LWKPDpllkdSKKKYGFTQFSANLNEITDIERDM 892
                 6777777766666777778999999999887754 PP

>> PH_3  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3   1.3e-06    0.0045      15      98 ..     214     303 ..     202     308 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.3e-06
        PH_3  15 kqgivkKr..kglf.arkRqllltdg..PrLiyvDpekmekkGeIplskelkvevknskkFlihtp..krtyyled.pegnaakWvkaieev 98 
                 +qg++ K+  k+l  ++kR + l  +     +y++ ++++++GeI +s  l++   n+k+ li+ +    +  l+   ++n ++Wv+a+++ 
  CCD23856.1 214 LQGYLLKKrrKKLQgFKKRFFTLDFKygTLSYYLNDHNQTCRGEIVIS--LSTVSANKKDRLIIIDsgMEVWALKAtDTKNWQNWVDALQSC 303
                 6788766544666699******97665366699***************..555555555544444434778888873456677899998876 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.9   0.00039       1.4       2      84 ..     215     282 ..     214     303 .. 0.65
   2 ?   -1.9   0.2       1.3   4.7e+03      37      84 ..     533     584 ..     518     593 .. 0.57
   3 ?   -3.4   0.1       3.7   1.3e+04      46      65 ..     841     860 ..     825     873 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00039
       PH_11   2 kGylkkkgsk...aWkrrwf.avlkdgvLeyYksekkkv..vkhviklSngseaklkadlisaalfkidsirssksddllleistetki 84 
                 +Gyl kk+ k   + k+r+f   +k g L+yY +++++    + vi lS  s +k  + +i +                      ++++
  CCD23856.1 215 QGYLLKKRRKklqGFKKRFFtLDFKYGTLSYYLNDHNQTcrGEIVISLSTVSANKKDRLIIID---------------------SGMEV 282
                 69999998888*********6678999*****9988888222345555555555555544444.....................34444 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.3
       PH_11  37 vkhviklSngseaklkadlisaalf....kidsirssksddllleistetki 84 
                 v+    +S ++ ak+ ad+ ++       + ++++ +++++++ + s++ k+
  CCD23856.1 533 VELTTSMSASQMAKVSADMFNQFSKveegEEKEQEKETEENEMEITSNGGKV 584
                 4555556666666666555443322344444444446666666666666555 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.7
       PH_11  46 gseaklkadlisaalfkids 65 
                 + ++k+  +l ++++ ki +
  CCD23856.1 841 QVVGKWSESLKDGKTKKILW 860
                 34677777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1356  (0.0756317); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 6724.70
//
Query:       CCD23857.1  [L=731]
Description: hypothetical protein NDAI_0C01970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-43  147.5   0.2    2.6e-42  145.1   0.1    1.9  2  SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
    3.1e-37  128.3   0.0    8.5e-33  113.7   0.0    3.6  4  SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
    8.4e-26   89.4   0.2    1.9e-08   33.9   0.0    4.2  4  Prenyltrans      Prenyltransferase and squalene oxidase repea
      0.004   16.2   0.4      0.018   14.1   0.2    2.0  2  TED_complement   A-macroglobulin TED domain


Domain annotation for each model (and alignments):
>> SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.085   3.8e+02     165     216 ..     128     181 ..     111     211 .. 0.72
   2 !  145.1   0.1   5.7e-46   2.6e-42       4     318 ..     388     722 ..     386     723 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.085
                      HHHHHHHS-T.TS----SSB..SSHHHHHHHHHHHHHHTT--TTSHHHHHHHHHH CS
  SQHop_cyclase_C 165 veylkkeqep.dGsWfGrWG..vnyiyGtwsvlsalaavgedleepvirkavdWl 216
                      + y+ ++ +p dG W G        ++Gt+   + l+ +g d ++pv  ka d l
       CCD23857.1 128 IRYIVNTAHPvDGGW-GLHSedKSTVFGTVLNYIILRLLGLDANHPVCMKARDTL 181
                      566666555524443.433311456888888888888888888888888887655 PP

  == domain 2  score: 145.1 bits;  conditional E-value: 5.7e-46
                      HHHHHHHHHHHHHHT--TT...-HHHHHHHHHHHTT-B-S...--GGGGT-TTS---BB-SSSS-TT--BHHHHHHHHHHHTT---S......T CS
  SQHop_cyclase_C   4 vWdtalavlalleagveae...eealkkaleWllekqvlv...kGdWkvkrpevepgGwafefaneyyPdvddtavvvlalkrvrlk......e 85 
                       Wd a+a++ l  ag +++    +++++a ++l + q ++   +G ++ k    + g w f  + + y   d ta  + a+  vr +      +
       CCD23857.1 388 TWDCAFAIQYLFVAGLAKRpefYNTISNAYKFLCRSQFDTdcvTGSFRDK----RDGAWGFSTKTQGYTVSDCTAESIKAIIMVRNSvifkdiH 477
                      5**********9988765411167999**********8851225666555....5689***********9999998888876665321221225 PP

                      HHHHHHHHHHHHHHHHHTB-TT....SSB-SSSSSB--SGGGGSTT-SS..S-SSB--BHHHHHHHHHHHHHHT-....-..TTSHHHHHHHHH CS
  SQHop_cyclase_C  86 ekkkeeaiaraveWilglqskn....GGwaafdkdntkellnkiPfadh..ealldpptadvtarvlellaqlge....e..edsealkravey 167
                      ++ ++e++ +av+ +l lq++     G +a+++k ++  +l+++  a+   + ++++p ++ t   +  l+++++    +  e s+ ++ a+ey
       CCD23857.1 478 DEISDERLYKAVDILLDLQNTGsfefGSFATYEKIKAPLFLEALNPAEVfgNIMVEYPYVECTDSSVLGLTSFHKhynyRkdEISKRINIAIEY 571
                      6677999************864344499***************988885447899***999998766555544331111311445778889*** PP

                      HHHHS-TTS----SSBSSHHHHHHHHHHHHHHTT--.TTSHHHHHHHHHHHTT--TTSSBB--GGGGT-GGGTT-SSBBHHHHHHHHHHHHHTT CS
  SQHop_cyclase_C 168 lkkeqepdGsWfGrWGvnyiyGtwsvlsalaavged.leepvirkavdWlksvqnedGGWGesaesykdpklagkgestasqtaWallallaag 260
                      +kk qe dGsW+G WG+ y y  + ++ al++vge   ++ v++k+ d+l+++q edGGWGes++s + ++++ + es   qtaW +lall a 
       CCD23857.1 572 IKKVQEDDGSWYGSWGICYTYAGMFAMEALHSVGETyGNSFVVKKGCDFLVARQLEDGGWGESMKSSELHTYVSTKESLVVQTAWVVLALLLAQ 665
                      **********************************9945677899************************************************** PP

                      GGGSHHHHHHHHHHHHH--TTS-----S--EEEETTTEEEEETTHHHHHHHHHHHHHH CS
  SQHop_cyclase_C 261 eveseavkrGiaylletqkedGtWeeeaytgtGfPrvfylkyhlyrkvfPllalaryr 318
                        +++ + +Gia l ++q+  G+W+ e+  g  f +   ++y  yr +fP+ al+ y 
       CCD23857.1 666 YPNKNIIDKGIALLKKRQQVSGEWKFESPEG-VFNHSCAIEYPSYRFLFPIKALGLYS 722
                      *************************998776.5**********************996 PP

>> SQHop_cyclase_N  Squalene-hopene cyclase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.0   1.9e-36   8.5e-33      13     256 ..      89     341 ..      78     369 .. 0.84
   2 ?    1.7   0.0     0.025   1.1e+02      46      64 ..     564     582 ..     554     596 .. 0.75
   3 !    7.2   0.0   0.00053       2.4       3      66 ..     567     633 ..     565     646 .. 0.71
   4 !    4.9   0.0    0.0027        12       5      79 ..     618     705 ..     614     712 .. 0.63

  Alignments for each domain:
  == domain 1  score: 113.7 bits;  conditional E-value: 1.9e-36
  SQHop_cyclase_N  13 kpdGhWvgeLeanvtitaeyillrefl.geddeeeeekiakylrsqqr.edGgWelypggpgdlsttveaYlALkllGdspdapalarArefil 104
                      ++ G++  + +  + +t  y+ ++ +   ++ e e+ +i +y+ ++ +  dGgW+l+ ++++ ++ tv  Y+ L+llG+++++p   +Ar+++l
       CCD23857.1  89 ETSGTFPCQYKGPMFMTIGYVAVNYVAdIKIPESERIEIIRYIVNTAHpVDGGWGLHSEDKSTVFGTVLNYIILRLLGLDANHPVCMKARDTLL 182
                      5567777888888999***********7777788999********99978******************************************** PP

  SQHop_cyclase_N 105 arGGvakvrvfTrilLalfglvpweavpalPpelmlLPkwfpfniykfsswaRttivPllilsakkpvaklpr..evdldELfveppeevkyel 196
                      + GG+  +  + +++L+++ l++we+v+  Ppe  lLP w+p++  ++ +++R +++P+++ls   ++++l +  +   +E++v+p ++++++ 
       CCD23857.1 183 RLGGAISAPHWGKVWLSVLNLYKWEGVNPAPPETWLLPYWMPIHPGRWWVHTRGVYLPISYLSLVHYQCELTDllKEIRSEIYVKPFDSIDFSK 276
                      ***********************************************************************988888899*****999999995 PP

  SQHop_cyclase_N 197 rkekk.....alswtklflaldkvlklle.rlplkplrkrAlrkaeewilerqeasgglggifpam 256
                      +++           +k +  +++++  +e  l +++lr+++ +k+ + i +++e+ +++  i p  
       CCD23857.1 277 HRNTVcgvdlYYPHSKTLDFANSLIVPYEkYLRPNALRDYSKHKVYDLIKKEIEN-TDYLCIAPVN 341
                      33322343333333555777778888899456999*****************995.5566676633 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.025
  SQHop_cyclase_N  46 eeekiakylrsqqredGgW 64 
                      +++ + +y+ + q++dG+W
       CCD23857.1 564 RINIAIEYIKKVQEDDGSW 582
                      5556677888888888887 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.00053
  SQHop_cyclase_N   3 raaeallslqkpdGhWvgeLeanvtitaeyil..lreflged.deeeeekiakylrsqqredGgWel 66 
                       a e++ + q++dG W+g    + t      +  l+ + ++  ++   +k + +l ++q edGgW+ 
       CCD23857.1 567 IAIEYIKKVQEDDGSWYGSWGICYTYAGMFAMeaLHSVGETYgNSFVVKKGCDFLVARQLEDGGWGE 633
                      5778999999*******99888777765444321333333331345889999*************85 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0027
  SQHop_cyclase_N   5 aeallslqkpdGhWvgeLea...........nvtitaeyillrefl.geddeeeeekiakylrsqqredGgWely.pggpgdlsttve 79 
                      +++l+++q +dG W   +++           ++++++ +++l  +l +  +++ ++k  + l ++q+  G W+   p+g ++ s+++e
       CCD23857.1 618 CDFLVARQLEDGGWGESMKSselhtyvstkeSLVVQTAWVVLALLLaQYPNKNIIDKGIALLKKRQQVSGEWKFEsPEGVFNHSCAIE 705
                      5666666666666655444311111111111345667778888888677778888999999999999999998764566677777765 PP

>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     3e-08   0.00014       5      44 .]     126     166 ..     125     166 .. 0.97
   2 ?   -2.9   0.0       1.3     6e+03       5      15 ..     487     497 ..     487     502 .. 0.86
   3 !   28.7   0.1   1.7e-10   7.7e-07       6      43 ..     568     604 ..     566     605 .. 0.95
   4 !   33.9   0.0   4.3e-12   1.9e-08       2      42 ..     613     663 ..     612     665 .. 0.94

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3e-08
                  HHHHHHHHHSH.TTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   5 kavefLlscQn.edGGwggrpgsesdtyytywalaaLallG 44 
                  ++++++ ++ +  dGGwg++ +  s++++t  ++ +L llG
   CCD23857.1 126 EIIRYIVNTAHpVDGGWGLHSEDKSTVFGTVLNYIILRLLG 166
                  689************************************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.3
                  HHHHHHHHHSH CS
  Prenyltrans   5 kavefLlscQn 15 
                  kav+ Ll  Qn
   CCD23857.1 487 KAVDILLDLQN 497
                  899******97 PP

  == domain 3  score: 28.7 bits;  conditional E-value: 1.7e-10
                  HHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHHHHC CS
  Prenyltrans   6 avefLlscQnedGGwggrpgsesdtyytywalaaLall 43 
                  a+e++++ Q +dG+w+g++g +  ty+ ++a+ aL+ +
   CCD23857.1 568 AIEYIKKVQEDDGSWYGSWGIC-YTYAGMFAMEALHSV 604
                  79********************.************865 PP

  == domain 4  score: 33.9 bits;  conditional E-value: 4.3e-12
                  HHHHHHHHHHHHSHTTS-BBSSTTS..........SBBHHHHHHHHHHHHH CS
  Prenyltrans   2 dvekavefLlscQnedGGwggrpgs..........esdtyytywalaaLal 42 
                   v+k ++fL  +Q edGGwg+++ s          es +++t+w+++aL l
   CCD23857.1 613 VVKKGCDFLVARQLEDGGWGESMKSselhtyvstkESLVVQTAWVVLALLL 663
                  689*********************************************965 PP

>> TED_complement  A-macroglobulin TED domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.12   5.3e+02      94     139 ..     388     438 ..     379     501 .. 0.70
   2 !   14.1   0.2     4e-06     0.018      57     188 ..     557     679 ..     544     693 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.12
                     HHHHHHHHHHHHHCHHHST.--HHHHHHHHHHHHTTB-TT....S-B--SS CS
  TED_complement  94 tWLtAfvlkvlaqakefif.ideeeiseslewLlseQked....GsFkeeg 139
                     tW  Af ++ l  a         + is+++++L ++Q +     GsF++++
      CCD23857.1 388 TWDCAFAIQYLFVAGLAKRpEFYNTISNAYKFLCRSQFDTdcvtGSFRDKR 438
                     677777777665543333312347899999999999976323337887764 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4e-06
                     HHHHHHHHHHHHHHHHHTCBETTSE.BBSSS..SS-BEHHHHHHHHHHHHHCHHHST--HHHHHHHHHHHHTTB-TTS-B--SS-SS-TTCSSST CS
  TED_complement  57 ikkkaleklekgyqrqlsykkadgs.ysafgkdssegstWLtAfvlkvlaqakefifideeeiseslewLlseQkedGsFkeegsllnrkmkggv 150
                      k+++ + ++ +   + + +++dgs y+ +g     + t    f +  l  + e +  +   +++ + +L+ +Q edG + e+ +  + +   + 
      CCD23857.1 557 RKDEISKRINIAIEYIKKVQEDDGSwYGSWG----ICYTYAGMFAMEALHSVGETYG-NSFVVKKGCDFLVARQLEDGGWGESMKSSELHTYVST 646
                     5677888888888888899999999889999....5778889999999999988765.67899*******************9887776555444 PP

                     .HCHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHH CS
  TED_complement 151 .ekevtLtAyvliaLleakeilelkkkvelsiskAleyL 188
                      e  v  tA+v++aLl a+        ++  i+k ++ L
      CCD23857.1 647 kESLVVQTAWVVLALLLAQYP------NKNIIDKGIALL 679
                     1455889********998432......334455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4987.91
//
Query:       CCD23858.1  [L=226]
Description: hypothetical protein NDAI_0C01980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-06   26.9   2.0    3.2e-06   26.9   0.6    1.7  2  Cyclin_N  Cyclin, N-terminal domain
    3.9e-06   27.3   2.2    5.4e-06   26.9   2.2    1.2  1  Cyclin    Cyclin


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.27   2.4e+03      26      49 ..      23      46 ..       4      54 .. 0.51
   2 !   26.9   0.6   3.6e-10   3.2e-06      18     126 ..      74     185 ..      57     186 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.27
                S-H.HHHHHHHHHHHHHHHHTT--T CS
    Cyclin_N 26 lnp.emRailidwlvevaekfkltp 49
                l++ e R+   + l++++++ kl+p
  CCD23858.1 23 LQKkENRD-DTKALLDLSQNIKLKP 46
                22213343.2344555555555555 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 3.6e-10
                 TCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CC.......CHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HH CS
    Cyclin_N  18 dyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkd.......klqlvgatcLllAaKveeisppkledlvyitdeaftee 109
                 +yl++++   p+ ++++ ++l+e+ ++ + +++ +++a  y+ +++ + ++++d         ++++++cL+l+ K+ ++++ +++ +  i++  ++++
  CCD23858.1  74 KYLSTKKV--PNEKSSIKTYLMEILKRSQSSRNNVIVASFYFQKLYNSVQLNQDpnpefvhCSKRIFLSCLILSHKFLNDKTFSMKAWSLISG--ISKR 168
                 55544443..56889999*****************************9999999***999989****************************77..**** PP

                 HHHHHHHHHHHHTTT-- CS
    Cyclin_N 110 eilemErliLetLnfdl 126
                 ++  +Er  L  Ln+ l
  CCD23858.1 169 DLSILERWCLMRLNYHL 185
                 **************987 PP

>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   2.2     6e-10   5.4e-06      10     161 .]      22     185 ..      14     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 6e-10
                 HHHHHHHHHH--------------T.....................T--SS-..........-SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH.. CS
      Cyclin  10 lldrlvanndetatasadsksnlensqkqssshtkttfaqtpkessFatkav..........paisigsylsrlqkfgesaplvllgtliYldrivkrc 98 
                  l++  ++ d +a    +++++l++  + s+s+ + ++++   + +F +  v          ++ si+ yl+ + k ++s+    ++++ Y++++ +  
  CCD23858.1  22 YLQKKENRDDTKALLDLSQNIKLKPITILSNSKLEYNMSLVDTIAEFLSETVkylstkkvpnEKSSIKTYLMEILKRSQSSRNNVIVASFYFQKLYN-S 119
                 56677778888899999999999**9999**9999999999999999999999999999999999*******************************9.4 PP

                 H-TT---STTTHH...HHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT-- CS
      Cyclin  99 vsealvvtsanih...RllivallvatKflvDlsysnekfakvggislkELnkLEidFlflvdFdl 161
                 v+     +   +h   R+ +  l  + Kfl+D   s + ++ + gis ++L  LE   l++++++l
  CCD23858.1 120 VQLNQDPNPEFVHcskRIFLSCLILSHKFLNDKTFSMKAWSLISGISKRDLSILERWCLMRLNYHL 185
                 4444444544444444****************************************9999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1705.55
//
Query:       CCD23859.1  [L=499]
Description: hypothetical protein NDAI_0C01990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-75  252.7   0.2    4.1e-75  251.9   0.2    1.4  1  Met_10           Met-10+ like-protein
     0.0056   16.4   0.0     0.0098   15.6   0.0    1.3  1  MethyltransfD12  D12 class N6 adenine-specific DNA methyltran
     0.0067   16.0   0.2      0.011   15.4   0.2    1.3  1  DUF4221          Domain of unknown function (DUF4221)
     0.0085   15.3   0.0      0.014   14.6   0.0    1.3  1  TRM              N2,N2-dimethylguanosine tRNA methyltransfera
  ------ inclusion threshold ------
      0.095   13.1   0.1       0.24   11.8   0.1    1.6  1  DUF1140          Protein of unknown function (DUF1140)


Domain annotation for each model (and alignments):
>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.9   0.2   1.2e-78   4.1e-75       2     199 .]     174     429 ..     173     429 .. 0.94

  Alignments for each domain:
  == domain 1  score: 251.9 bits;  conditional E-value: 1.2e-78
                 EEEEETTEEEEEB-TTSSHHHHHHHHHHHHHS.S-SCEEEE-S-SBTTTTB--EEEEEE.S-.SEEEEEETTEEEEEETTTS---GGGHHHHHHHHTT. CS
      Met_10   2 kfeiiGdvvilnlreelkeykkvigevildkt.kvktvlrkvsevegefRtfelevlaG.sdstetihkEngcrfklDvskvyfsskleaErerlakl. 97 
                 +f+++G++++lnlr+e+k+++ +ig+vildk+ k+++v++kvs+++++fRtf+++v+aG  d++++++kE++c+fk+D+skvy++s+l++E+ rl+++ 
  CCD23859.1 174 GFTVTGHIAHLNLRAEFKPFDALIGQVILDKNhKIECVVDKVSSIATKFRTFPMKVIAGnVDNLIVEQKESNCTFKFDFSKVYWNSRLHTEHDRLVTKy 272
                 8**********************************************************8799********************************9888 PP

                 --TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTCEEEEES-GGG---..TT-EE........................ CS
      Met_10  98 veegevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekvvkpileDgrevir..eqlad........................ 170
                 ++ gevV+dvfAG+Gpfa+p++k  k+++vla+dlnPes+kylkeni+lNkv++ vkp++ Dg e+ir  ++                           
  CCD23859.1 273 FNMGEVVCDVFAGVGPFAVPAGK--KDVIVLANDLNPESFKYLKENITLNKVDQLVKPFNLDGGEFIResPT--Llkrwidneengkihvnikptrkrh 367
                 ***********************..******************************************95433..3458999****************** PP

                 ........................EEEE--TTTGGGGHHHHHHHEEEE.........EEEEE CS
      Met_10 171 ........................rvvmnlpksaieFldkvlaalkdg.........gvihy 199
                                         ++vmnlp+sai+Fl++ +               +v+++
  CCD23859.1 368 kknedgtsepvklykevvipneisHFVMNLPDSAIDFLGSFIGLYSSDttknkmpwiHVHCF 429
                 ****************************************6655544445678999999998 PP

>> MethyltransfD12  D12 class N6 adenine-specific DNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.7e-06    0.0098      21      73 ..     276     329 ..     266     353 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.7e-06
                      -SEEEETT-TTSCCHHCS...SSCEEEEES-HHHHHHHHHHCCH.SHHHHHHHH CS
  MethyltransfD12  21 gktfvepFaGggaVffeakkqgkkvlinDinedlinlykalikn.nveelikel 73 
                      g++++++FaG g +++ a k+   vl+nD+n++++   k  i   +v++l+k +
       CCD23859.1 276 GEVVCDVFAGVGPFAVPAGKKDVIVLANDLNPESFKYLKENITLnKVDQLVKPF 329
                      6899******************************99888655434899988765 PP

>> DUF4221  Domain of unknown function (DUF4221)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2     3e-06     0.011     116     219 ..     345     449 ..     313     465 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3e-06
                 TEEEEE-TT--EEEEEE---TTS-------BT..TTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT--EEEEEEE--S------SSEEE- CS
     DUF4221 116 nelflfnesgekvkkinlesnelegeenefgs..fvnspiaikdgklysgqrlkkelngekiekikglaiidlktkkvkliplkypdilkkdlvsiegg 212
                 ++ +  +e g++  +i+   ++ + +e+++++   +++ + i+++++ + ++l  +++ +++ ++ gl++ d +++k+ +i++   +++++d + + ++
  CCD23859.1 345 KRWIDNEENGKIHVNIKPTRKRHKKNEDGTSEpvKLYKEVVIPNEISHFVMNL-PDSAIDFLGSFIGLYSSDTTKNKMPWIHVHCFEKYDNDEDLTMEE 442
                 556666788999999999888876666666663367***************95.88999********************************98866666 PP

                 --EEEEE CS
     DUF4221 213 lfsevsy 219
                 l s v+ 
  CCD23859.1 443 LHSRVYQ 449
                 6665554 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.9e-06     0.014      76     114 ..     299     337 ..     239     346 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.9e-06
                 EEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHHHH CS
         TRM  76 evlaNDisekAvelikeNvklneveeivvineddAnvll 114
                  vlaND++++  + +keN++ln+v+++v++ + d   ++
  CCD23859.1 299 IVLANDLNPESFKYLKENITLNKVDQLVKPFNLDGGEFI 337
                 489*************************99887876665 PP

>> DUF1140  Protein of unknown function (DUF1140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.7e-05      0.24      22      94 ..     202     274 ..     193     278 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.7e-05
     DUF1140  22 kkkkeraelvkeklaesgksvrtsryWkaaenlefyikeiskkldqllelD.rsfrWsekLhqdrlkfvekykk 94 
                 + k++++e v  k+++ ++  rt      a+n++  i e ++   ++ ++D  ++ W  +Lh ++ ++v+ky +
  CCD23859.1 202 LDKNHKIECVVDKVSSIATKFRTFPMKVIAGNVDNLIVEQKESNCTF-KFDfSKVYWNSRLHTEHDRLVTKYFN 274
                 678999*******************999**********988776666.55625689****************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3737.24
//
Query:       CCD23860.1  [L=364]
Description: hypothetical protein NDAI_0C02000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-16   57.7   0.1    1.3e-15   56.9   0.1    1.5  1  ECR1_N    Exosome complex exonuclease RRP4 N-terminal region
    1.3e-09   38.2   0.2    2.7e-09   37.2   0.2    1.5  1  KH_6      KH domain


Domain annotation for each model (and alignments):
>> ECR1_N  Exosome complex exonuclease RRP4 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1   1.4e-19   1.3e-15       1      38 []      55      92 ..      55      92 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 1.4e-19
                EE-TT-EEEETTTSEE-TTEEEETTEEEESSSEEEEEE CS
      ECR1_N  1 iVtPGevlttdeefmrGhGTYvrggtiyAsvaGtvevv 38
                iVtPGe +t+d+ +mrGhGTY  ++ +y+svaG v++v
  CCD23860.1 55 IVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGAVSRV 92
                9**********************************996 PP

>> KH_6  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.2     3e-13   2.7e-09       1      45 [.     198     239 ..     198     240 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 3e-13
        KH_6   1 GmlfeVslslvrRllnhvLeeLgkagpfeiavGlNGriWvksesp 45 
                 Gm+ +V++sl+ R +nh  ++L+ +  + +++G+NG+iW+ ++s+
  CCD23860.1 198 GMFCQVPSSLIVRSKNHT-HNLPGN--ITVVLGVNGFIWLRKTSQ 239
                 9*****************.****98..9************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2741.53
//
Query:       CCD23861.1  [L=387]
Description: hypothetical protein NDAI_0C02010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-133  444.9   0.0   1.3e-133  444.7   0.0    1.0  1  DS        Deoxyhypusine synthase


Domain annotation for each model (and alignments):
>> DS  Deoxyhypusine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  444.7   0.0  7.3e-138  1.3e-133       1     288 []      47     375 ..      47     375 .. 0.99

  Alignments for each domain:
  == domain 1  score: 444.7 bits;  conditional E-value: 7.3e-138
          DS   1 ellesyekigfqatslgeaidilnkm......................rkdekctiflgltsnlissGlreiiadlvkeklvdvivtTaggieeDlika 77 
                 +l+e+++++gfqa+slg+a+di+++m                      +  +k+tif+g+tsnlissGlre++++lv++k+vd+ivt+aggieeD+ik+
  CCD23861.1  47 DLVEAMKRMGFQASSLGKACDIIDNMrswrgkhideledhdkkgsfdeNGFQKTTIFMGYTSNLISSGLRETLRYLVQHKMVDAIVTSAGGIEEDIIKC 145
                 59********************************************99777899********************************************* PP

          DS  78 lgkktylgdfelddeeLrekginRignllvpnenyckfedwvreildkleeeqk....................vwspselikelGkeindeeSilywA 156
                 l++ ty+g+f+l++++Lr++g+nRignllvpn+nyckfe+w+ +ild+++eeq+                    +w+ps++i+++Gkeinde+S+lywA
  CCD23861.1 146 LAP-TYMGEFSLKGSKLRDQGMNRIGNLLVPNDNYCKFEEWIVPILDTMLEEQDayvkehgadcleanqdlntpIWTPSKFINRIGKEINDETSVLYWA 243
                 ***.************************************************999******************99************************ PP

          DS 157 ykndipvfcpaltDgslGdqlllfhsvk.ekkklkldivkDirelndialkakktgaiilGGGvpKhhilnanlmrngadyavyittaqefdGslsgat 254
                 +kn+ipvfcp+ltDgs+Gd +l+fh++k ++k+l+ldiv+Dir++n+++++a+k+g++ilGGG++Khhi+na+lmrngadyavyi+t+qefdGs++ga+
  CCD23861.1 244 HKNNIPVFCPSLTDGSIGD-MLFFHTFKaSPKQLRLDIVADIRKINSMSMEASKAGMLILGGGLIKHHIANACLMRNGADYAVYINTGQEFDGSDAGAR 341
                 *******************.*******99********************************************************************** PP

          DS 255 ldEavSwgkikaeaksvkvyaDaTivlPLlvaat 288
                 +dEavSwgkik ea+svkvyaD+Tiv+PL+vaat
  CCD23861.1 342 PDEAVSWGKIKVEAESVKVYADVTIVWPLIVAAT 375
                 *******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3091.45
//
Query:       CCD23862.1  [L=291]
Description: hypothetical protein NDAI_0C02020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.015   14.8   0.0      0.023   14.2   0.0    1.2  1  MaoC_dehydratas  MaoC like domain
      0.084   12.6   0.0       0.31   10.7   0.0    1.9  2  GYF              GYF domain


Domain annotation for each model (and alignments):
>> MaoC_dehydratas  MaoC like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.6e-06     0.023      19      96 ..     172     249 ..     149     261 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.6e-06
                      EHHHHHHHHHHHT---GGGT-HHHHHH.TTTSSSB--HHHHHHHHHHHHHHHHSTTEGGGEEEEEEEE-S--BTTCEEE CS
  MaoC_dehydratas  19 teadialyalvsgDlnpiHvdpefAkk.agfggpIahGmltlaivaklveeelgdnvvarvgeikvrFtkpVlpgdtlk 96 
                      +++di  y +++ +   iH+d +++++  g + +I++G ++l ++ k     + ++ ++ ++  k +  +p +p  +++
       CCD23862.1 172 KREDIISYSYLTSNPHRIHLDSQYSQEiEGYKDIIVQGPFSLQVMLKFADVYF-KGTATSIRNVKYKHSSPIYPETKVD 249
                      489********************77762699**************99765555.5588999999999999999988876 PP

>> GYF  GYF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       0.5   4.5e+03      25      31 ..      57      63 ..      56      65 .. 0.74
   2 ?   10.7   0.0   3.5e-05      0.31      10      30 ..     207     226 ..     202     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.5
         GYF 25 agYFkdg 31
                +gYF+++
  CCD23862.1 57 DGYFTHQ 63
                7999875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 3.5e-05
         GYF  10 vqGPFsseeMqkWykagYFkd 30 
                 vqGPFs + M k  ++ YFk 
  CCD23862.1 207 VQGPFSLQVMLKF-ADVYFKG 226
                 9***********9.9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2155.20
//
Query:       CCD23863.1  [L=601]
Description: hypothetical protein NDAI_0C02030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-20   71.2   7.6    2.8e-11   43.2   0.7    3.4  4  BSD       BSD domain
    1.3e-19   70.3   0.2    2.9e-19   69.2   0.2    1.6  1  PH_TFIIH  TFIIH p62 subunit, N-terminal domain
  ------ inclusion threshold ------
      0.039   13.5   0.2      0.039   13.5   0.2    2.3  2  UCH       Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> BSD  BSD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1   3.5e-11   2.1e-07       9      58 .]     152     202 ..     142     202 .. 0.91
   2 !   43.2   0.7   4.7e-15   2.8e-11       2      58 .]     220     276 ..     219     276 .. 0.95
   3 ?   -2.4   0.0      0.82   4.9e+03       4      19 ..     428     444 ..     426     449 .. 0.82
   4 ?   -3.3   0.0       1.6   9.4e+03      16      30 ..     541     555 ..     536     556 .. 0.62

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3.5e-11
         BSD   9 kteeiaqsllkedpeLrklynel.VPskvseeqFWsrYfyllrahaieeeq 58 
                 ++ +++qsllk +++L k++ e  + s +   +FWs+++ llra+a++++q
  CCD23863.1 152 TNLKLQQSLLKNNKNLMKTFQETvIHSGLLADEFWSTRIPLLRAFALSTSQ 202
                 7889*******************99*********************99987 PP

  == domain 2  score: 43.2 bits;  conditional E-value: 4.7e-15
         BSD   2 dnkfkldkteeiaqsllkedpeLrklynelVPskvseeqFWsrYfyllrahaieeeq 58 
                 +nk+++++  e + s+++ +p ++k+y+++VP+  +e +FW r+f++++++++++e+
  CCD23863.1 220 ENKVNVNLSREKIYSIFENYPIVKKAYDDNVPKNFKEPEFWARFFSSKLFRKLRGEK 276
                 5889999*********************************************99885 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.82
         BSD   4 kfkld.kteeiaqsllk 19 
                  f+ d  ++ei++ l +
  CCD23863.1 428 AFDSDaVKQEISTVLNS 444
                 69999999***998875 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.6
         BSD  16 sllkedpeLrklyne 30 
                  + k + +L+  +++
  CCD23863.1 541 TVKKLYNNLKDCMDK 555
                 455666677766666 PP

>> PH_TFIIH  TFIIH p62 subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.2   4.8e-23   2.9e-19       2      87 .]       9     105 ..       8     105 .. 0.94

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 4.8e-23
    PH_TFIIH   2 ykKkdGtLtlte....krleWtp.dasssapsvsiplseIknlqispagsaKvmLklvlked............ks.eeesytFtFtngsearkerdav 82 
                 +kK++G++t++e    ++l W++ d   + ++++i l+ I++lq++p +s+K+mL+l+ k d            ++ ++++++F+F+n    r+++d++
  CCD23863.1   9 FKKVSGIITINEdaspAELIWRStD---GDKTHTIILDGIDKLQATPVTSEKMMLRLMSKVDenkkvkdnegneAPpKPQTHMFSFNN----RTVMDNI 100
                 8*********************833...4589****************************99***********96669**********....******* PP

    PH_TFIIH  83 kdlLq 87 
                 k +Lq
  CCD23863.1 101 KTTLQ 105
                 ***98 PP

>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.9      0.24   1.4e+03      21      21 ..     137     137 ..      29     236 .. 0.55
   2 ?   13.5   0.2   6.5e-06     0.039      13     107 ..     439     575 ..     438     599 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.24
                 T CS
                 x RF
         UCH  21 s 21 
                 +
  CCD23863.1 137 N 137
                 2 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 6.5e-06
                 HHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTH.......................HHHHHHHHHHHHHSH-CCEE--.......... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxx.......... RF
         UCH  13 nsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkge.......................lakalkdlfkellkskskavsP.......... 78 
                 + vl +L+++  l++++ + ++++++s+  ++  ++n ++ k++                                            P          
  CCD23863.1 439 STVLNSLINTLDLSKMIPDDSTSSEISKRINSAVKTNAKQAKHNtvdslmgafvgnrtdeieasstiP--------------------Pdllescrilh 517
                 568999********999998888888887777766666666554344444444444444444444440....................46666666666 PP

                 .............................HHHHHHHHHHSGGGTSSSTCEHHHHHHHH CS
                 .............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  79 .............................kklkktlsklaksfsgykqqDaqEflafl 107
                                              ++lk +++kl++ f+  +q D+qE+ + +
  CCD23863.1 518 stcceflkhfyihfqsglakrastvkklyNNLKDCMDKLKELFHDVRQGDSQEMAETC 575
                 6666666666666666666666666667799**********************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1173  (0.0654247); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4573.11
//
Query:       CCD23864.1  [L=306]
Description: hypothetical protein NDAI_0C02040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-19   70.0   0.0    4.6e-19   69.2   0.0    1.4  1  RNase_PH    3' exoribonuclease family, domain 1
    4.3e-17   61.9   0.1    8.4e-17   61.0   0.1    1.5  1  RNase_PH_C  3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   5.1e-23   4.6e-19       1     132 []      32     165 ..      32     165 .. 0.95

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 5.1e-23
                 EEEEEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CCEEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-C....... CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddaegaldveveyapfasgerrregrpsdeeielsrlleralrpsill....... 92 
                 ++R+++i++g      G + +e+G+tkv + ++++i++ p e+  ++eg + +  e +p+a +++++++ +++ e++++r++e+a+r+s+ l       
  CCD23864.1  32 QFRDVKIAFG---DEYGDVTIEMGKTKVHCRISCQITQ-PYED-RPFEGLFLISTENSPMAGPQFENGNNTNEDEVLIARIIEKAVRRSGALdieglci 125
                 69********...99*********************98.8888.667899***************9999999*******************99999999 PP

                 .CGCCTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  93 .ekkpkstididitvlssdggslldalinaaslALadagip 132
                   + +++ ++ d++ l+ dg + +da+++a+++ L++++ p
  CCD23864.1 126 vAGSKCWAVRADVHFLNCDG-GFIDASCIAVMAGLLHFRKP 165
                 99999***************.***************99876 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.1   9.4e-21   8.4e-17       1      66 [.     191     270 ..     191     271 .. 0.92

  Alignments for each domain:
  == domain 1  score: 61.0 bits;  conditional E-value: 9.4e-21
                 S--EEEEEEEET..........TE....EEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSCEEHHHHHHHHHHHHH CS
  RNase_PH_C   1 apviavtvgkvd..........dq....fvlDptkeEedlsegdltlavagtkevvtlmkeggsqldeetlleaielAkk 66 
                 +++i+vt+++++          d+     ++D+t++Ee+l++g+lt+++++++evv+++k+gg ++d+ +l+e++  A+ 
  CCD23864.1 191 HVPICVTFSFFNpmdteenikgDTnaeiTIIDATLKEELLRDGVLTVTLNKNREVVQVSKAGGLPMDALSLMECCRKAYA 270
                 68**************999998225567***********************************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2473.35
//
Query:       CCD23865.1  [L=289]
Description: hypothetical protein NDAI_0C02050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-73  245.9   0.2    3.6e-73  245.6   0.2    1.1  1  RNase_P_p30  RNase P subunit p30


Domain annotation for each model (and alignments):
>> RNase_P_p30  RNase P subunit p30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.6   0.2     2e-77   3.6e-73       1     214 [.       3     227 ..       3     228 .. 0.98

  Alignments for each domain:
  == domain 1  score: 245.6 bits;  conditional E-value: 2e-77
                  EEEEE-SH..................HHHHHHHHH-SEEEEEEEEEESS---HHHHH............HHHHHHHH..HHSSEEEEEEES-H.HHHH CS
  RNase_P_p30   1 ydlnipwpsddskkks.........rtiktlaelgytgvainftveaekekkpnase.....pikeelkelkkelsglkllsRvtlvvsdpsklqrls 84 
                  +dln++wp+++ k +          +t++tl++lgyt+ a+nftv+ +++k+pn+ +     +i+e++ +++ke +g+k++sR+tlv++dps++q+ls
   CCD23865.1   3 VDLNVEWPQKSFKESIkpedlerlrATLSTLYTLGYTHTALNFTVN-HSDKFPNNVKdmnpmNIQELFGDFMKE-TGMKIYSRITLVIDDPSNGQSLS 98 
                  6**********9987799****************************.********999**9999**********.77********************* PP

                  HHHHH--EEEEE--SHHHHHHHHHT.T-SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHHHS-HHHHHHHHHHHHHHHHHHHH--EEEE--B CS
  RNase_P_p30  85 kvrqkfdllavrPttekalraacenldvDiisidltsrlpfglkhktiraAvergvafEinyspllrdsglaRrnfisnarkllrltrgkgvviSSgA 182
                  k++q+fd++a+ P++e++l++a++nl++D++++++ +rlp++lkhk i+++v+rgv++E+ ys++lrd + +Rr+ ++n+r+++r++r++g+viSSgA
   CCD23865.1  99 KISQAFDIIAALPISERGLTLATTNLEIDLLTFNYGQRLPTFLKHKSICSCVNRGVKVEVVYSHALRDIQ-SRRQYVQNVRSVIRSSRSRGIVISSGA 195
                  **********************************************************************.*************************** PP

                  SSGGG---HHHHHHHHHHHT--HHHHHHTTTH CS
  RNase_P_p30 183 esplelRnpydiinLlktlGLeedrakeavse 214
                  +++le+Rn+  +++L+k+lGLe+d++++a+++
   CCD23865.1 196 QNSLECRNILGVSSLIKLLGLESDKCTKAMGQ 227
                  *****************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2197.55
//
Query:       CCD23866.1  [L=832]
Description: hypothetical protein NDAI_0C02060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2003  (0.111718); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 5448.35
//
Query:       CCD23867.1  [L=379]
Description: hypothetical protein NDAI_0C02070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-30  104.7   0.0    5.4e-30  104.1   0.0    1.3  1  ApbA           Ketopantoate reductase PanE/ApbA
    5.8e-29  100.8   0.2    9.4e-29  100.2   0.2    1.3  1  ApbA_C         Ketopantoate reductase PanE/ApbA C terminal
  ------ inclusion threshold ------
      0.097   12.7   0.1       0.39   10.7   0.0    2.0  2  Med31          SOH1
       0.41   10.8   3.1        7.1    6.8   0.2    2.6  2  Bromo_TP_like  Histone-fold protein


Domain annotation for each model (and alignments):
>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0   1.2e-33   5.4e-30       1     151 [.       9     172 ..       9     173 .. 0.92

  Alignments for each domain:
  == domain 1  score: 104.1 bits;  conditional E-value: 1.2e-33
                 EEEES-SHHHHHHHHHHHH.HTHCEEEE-SCH.HHHHHHHHC.EEEEETT..CEEEEEECEEECCH...SCCCCS-ESEEEE-SSGGGHHHHHHHHGGG CS
        ApbA   1 iailGaGaiGsllaakLak.agadvtlilrsr.rlealkknG.lrltseg..geeilrppealsae...ekselepidlvivtvKayqteealeeikpl 91 
                 i+ilG+G++G++la+ L + ++a v+ ++rs+ +l++++ +G +++++++  +e++ +++ +++++   e+ + + i+++++t+K+yqt+eal+++ ++
  CCD23867.1   9 IHILGLGSMGTVLAVDLIRfTNALVIPLFRSKeKLDKFQIEGhSKISIRKlyEEKKPLVECKVEEAqcpETFNSGIIENLVITTKTYQTKEALAPYLKY 107
                 9******************99999********9999988888356666669888887888887777999999*************************** PP

                 ECTCEEEEEESSSSCHHHHHTTTS.....TTSEEEEEEEE-EEEEEETTEEEECS--EEEEEESS CS
        ApbA  92 ldpntvvlllqNGlgheeelreal.....pkprvlggvtthgatregpgevhhagkgeikigela 151
                 ++++t+ +l+qNGlg++e l++++      +p++++gv++hg+++e+ +++ hag++ +k++ l+
  CCD23867.1 108 INSHTNLILIQNGLGVLEVLKDEVfvnksERPQLFQGVISHGVYQESGFTYAHAGWAGMKVARLP 172
                 ****************************9999*************************99998765 PP

>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.2   2.1e-32   9.4e-29       2     122 ..     217     361 ..     216     363 .. 0.80

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 2.1e-32
      ApbA_C   2 irlarweKllinaainpltalldckngellespelralvrallkEalavaeaeg................velseer............leeaveavle 72 
                 ++l ++ K+l+n+++np+ta++dc nge++   +++ ++r++++E+l v++ +                 v     +            ++e ++  ++
  CCD23867.1 217 MLLGQLFKFLVNCCMNPVTAIVDCVNGEMV--DYCAPVFRSIIDECLTVLRVAYkplfayenqykgnedyV-----SltvdsilntehmVKEVIRIGCD 308
                 567899************************..9*****************777744444444434444443.....04444566655557777777777 PP

      ApbA_C  73 ktaanrsSMlqDveagrktEidyinGavvklAeklgve...tPvnellyellk 122
                  + +n+sSM+qD ++ r tEidyinG+vv lA+k+ +    + vn+++ el++
  CCD23867.1 309 INERNSSSMRQDTLYLRDTEIDYINGYVVDLAKKYEMGaaaANVNKTISELVN 361
                 7999*******************************998556789999999997 PP

>> Med31  SOH1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.7e-05      0.39      24      87 ..      91     149 ..      81     156 .. 0.83
   2 ?   -2.5   0.0       1.2   5.2e+03      70      88 ..     185     203 ..     177     214 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.7e-05
                 TSSSSSSSTHHHHHHHGGGGGSTTCCCTT--CHHHHHHHHHHSSTTCCCCTCTCHHHHHHHHHH CS
       Med31  24 aqekyledeafiaYLkYLeywkepeYakfltyPqcLkaLellqeeefrkelkkpevvealekqq 87 
                 +++ y ++ea++ YLkY++ +     ++ +   + L +Le+l++e f ++ ++p++++ + ++ 
  CCD23867.1  91 TTKTYQTKEALAPYLKYINSH-----TNLILIQNGLGVLEVLKDEVFVNKSERPQLFQGVISHG 149
                 567799***********9865.....56677789*********************999877665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
                 CCCCTCTCHHHHHHHHHHH CS
       Med31  70 frkelkkpevvealekqql 88 
                 ++++ +++e+v+ l++q++
  CCD23867.1 185 VKRDYAENELVNLLMSQTF 203
                 5556666666666666655 PP

>> Bromo_TP_like  Histone-fold protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.014        63      47     104 ..      73     127 ..      42     139 .. 0.66
   2 ?    6.8   0.2    0.0016       7.1      57      87 ..     177     206 ..     175     232 .. 0.75

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.014
  Bromo_TP_like  47 dkdlleeilikllleeslgedsYkrnELls.FLkyqlnlkkqlktkeaveedeslleiL 104
                    + +  e + + ++++  ++ + Y+++E l  +Lky ++ ++ +  +    ++  +le+L
     CCD23867.1  73 EAQCPETFNSGIIENLVITTKTYQTKEALApYLKYINSHTNLILIQ----NGLGVLEVL 127
                    3444455567777788889999****96643999988888877744....444444444 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0016
  Bromo_TP_like  57 kllleeslgedsYkrnELlsFLkyqlnlkkq 87 
                    ++++ +sl + +Y +nEL++ L  q    k+
     CCD23867.1 177 EMIQTNSLVKRDYAENELVNLLMSQT-FAKE 206
                    68999****************99985.3444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2772.14
//
Query:       CCD23868.1  [L=542]
Description: hypothetical protein NDAI_0C02080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-74  249.7   3.3    1.1e-73  248.4   0.5    2.1  2  HSP70     Hsp70 protein
    2.8e-09   36.3   0.0    4.2e-09   35.7   0.0    1.2  1  MreB_Mbl  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.4   0.5   1.2e-77   1.1e-73       1     441 [.       5     456 ..       5     466 .. 0.87
   2 !    1.9   0.0    0.0056        51     465     491 ..     511     537 ..     486     541 .. 0.85

  Alignments for each domain:
  == domain 1  score: 248.4 bits;  conditional E-value: 1.2e-77
                 EEEEEEXSSEEEEEEEE.TTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEE CS
       HSP70   1 viGiDLGttnsvvavme.ggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkav 98 
                 viGi  G+t+s +a ++ +++++vian  g+r+ Psv+++  ++ + G +A +q v+np+nt+++++ +iG  f++ ++ +  ++ p      + g ++
  CCD23868.1   5 VIGISFGNTSSSIAYINpKNDVDVIANPDGERAIPSVLSYVGEDEYHGGQALQQLVRNPTNTIINFRDFIGLPFDQCDISRCANSAPAVEIDGKVGFVI 103
                 79************7762678************************************************************999999766666677777 PP

                 EEEEETTEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCC..SSSCEEEEEEEEXS CS
       HSP70  99 veveaagekftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldk..kdkernvlvyDlGg 195
                 ++ e ++ek+t +++ ++ L++lk  ae+y+g+kv++av+tvP+ f+ +q+ a   A+   GL+++  +Nep Aa la  +++  ++k+ nv+v D+Gg
  CCD23868.1 104 AKGEGKEEKLTVDEVVSRHLNRLKLAAEDYIGQKVNQAVLTVPTNFTTEQKDALSTAADKVGLKIVQFINEPSAALLAH-IEQfpSEKDCNVVVADFGG 201
                 77787777**********************************************************************8.443115599********** PP

                 SXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEE CS
       HSP70 196 gtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlsekls 294
                    d+ + ++  G+f ++aTa D++lGG++ D++l+e+++++f++k++ + +k+ + l +l+ +    Kk+LS+  +t+++++i+++ + g d++++++
  CCD23868.1 202 VRSDAAVFAIRGGIFTILATAHDNTLGGDNLDAELIEYFAKDFQTKTKTNPRKNARSLAKLRINSIVTKKTLSN--ATTATISIDSLAD-GFDYHTSIN 297
                 **************************************************************************..89*********99.********* PP

                 HHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHH.......HHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCC. CS
       HSP70 295 RakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvk.......elfg.kepsktvnpDeavaiGAAvqagvlsgeeevkdl. 384
                 R ++e ++++++ +  e +++ +k a+l+  +id+v+l GG +  Pk+ + ++       e++g  +++ +  p e  a GAA+qa + +   + ++l 
  CCD23868.1 298 RMRYELVASKVFGKFGEFINSTIKKANLDPLDIDAVLLAGGVSFSPKLATNLEytlpesvEILGpSNANASNYPNELAASGAALQARLVAD-YDEDELk 395
                 ***********************************************99988644444446777678888899*************98776.3333331 PP

                 .EEEEBESS-EEEEETTTEEEEEESTTCBSSEEEE.EEEEESSTTSS..SEEEEEEESSSS CS
       HSP70 385 .lllDvtpLslgietlggvmtkliernttiptkks.qvfstaadnqt..aveievlqgere 441
                  +l+ ++  +l ++   g+++   +    + ++ s +v + +++++   ++ i v++g+ +
  CCD23868.1 396 eALQPIIVNTLHLQKPIGLVDSEGNFVPILLAETSyPVQKKITLKKAsgDLLIGVYEGDST 456
                 1466666667777777777766666666666666666666555555545666777777665 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.0056
                 SEEEEEEEEETTSCEEEEEEETTTCCE CS
       HSP70 465 pqieVtfdidanGiltvsakdketgke 491
                 + +e  f+i+++G ltvsa+d +t++ 
  CCD23868.1 511 SGLELVFNINKDGKLTVSARDLKTNQV 537
                 457889***************999865 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   4.7e-13   4.2e-09      92     293 ..     137     349 ..     114     378 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 4.7e-13
                 S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHT..T--TTSSS-EEEEEE-SS-EEEEEEET.TEEE....EEEEES-SHHHHHHH CS
    MreB_Mbl  92 skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGa..glpveepsgnmvvdiGggttevavisl.ggiv....tsksvrvaGdeldea 183
                 + ++ v++vP++ t  ++ A++ aa k+G + v+ i+ep aA +    + p e+    +v d Gg  ++ av ++ ggi     t++   ++Gd+ld +
  CCD23868.1 137 KVNQAVLTVPTNFTTEQKDALSTAADKVGLKIVQFINEPSAALLAHieQFPSEKDCNVVVADFGGVRSDAAVFAIrGGIFtilaTAHDNTLGGDNLDAE 235
                 4567899********************************9876653224555566666777************983556411114566789******** PP

                 HHHHHHHHHSEE-...-HHHHHHH.HHHH-BSS--HHHH...EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH CS
    MreB_Mbl 184 iikyirkkynlli...Gertaeki.kieigsavkeeeee...kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadivdr 275
                 +i+y  k+++      ++++a+++ k++i s+v++++ +   + +i+   l+ g   +++++  + + + ++++ +  e ++++++k+  +   di   
  CCD23868.1 236 LIEYFAKDFQTKTktnPRKNARSLaKLRINSIVTKKTLSnatTATISIDSLADGFDYHTSINRMRYELVASKVFGKFGEFINSTIKKANLDP-LDI--D 331
                 *********98762224455655438899988877765544577888889999999999999999999999999999999999988876542.233..4 PP

                 -EEEESGGGGSBTHHHHH CS
    MreB_Mbl 276 givltGGgallkgldkll 293
                 +++l+GG +    l + l
  CCD23868.1 332 AVLLAGGVSFSPKLATNL 349
                 577777777666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.48
# Mc/sec: 3402.03
//
Query:       CCD23869.1  [L=244]
Description: hypothetical protein NDAI_0C02090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-18   66.4   0.0    5.2e-18   65.7   0.0    1.3  1  HAD_2           Haloacid dehalogenase-like hydrolase
      3e-08   34.2   0.1    5.5e-07   30.1   0.1    2.1  1  Hydrolase       haloacid dehalogenase-like hydrolase
       0.01   15.9   0.1       0.02   14.9   0.1    1.5  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   8.8e-22   5.2e-18       1     177 [.       9     199 ..       9     200 .. 0.77

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 8.8e-22
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkli.glslrellrklgeseeeee..kieellrkyneekkkkevkpydgvkelLeeLkea.. 94 
                 ++FDlDgT++ t+ +  +a+++l++ey++   ++e+l k+  g  ++e++ +++++ ++++   ++el +  ++  + ++v++++g k+lL +L ++  
  CCD23869.1   9 CLFDLDGTIVSTTVAAESAWKKLCAEYDV---DPEKLFKYShGARSNEIMARFFPKLDNSDnkAVKEL-ELSMAYDYLDTVQLIPGSKDLLISLDKEtg 103
                 69*************************55...777777775267899********9886654444444.33333333379**************66423 PP

       HAD_2  95 ......gyklgivTsks....reaveekleqlgiesyFdvivtsedvekkKPdpeviekalekl....klkkeeviy..vGDsptDieaakkagikvia 177
                       + k +ivTs+s     + ++  l+++g     d+ +t+ dv++ KPdpe ++ka ++l    kl+ke++ y  ++D p +i a+kk+g  +++
  CCD23869.1 104 sakevgQRKWAIVTSGSpylaYSWFDTILKEIG---KPDTFITGFDVKNGKPDPEGYAKARDQLcetlKLDKEKARYvvFEDAPVGITAGKKIGAITVG 199
                 3333334699******72222455555666666...667779******************99988888999999988446**************88776 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1   9.2e-11   5.5e-07       2     210 .]       7     194 ..       6     194 .. 0.71

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 9.2e-11
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtv 100
                 + ++fD+dGT++ ++   e +++++                     a+++  +++l  f            + e +++              +s+ + v
  CCD23869.1   7 DFCLFDLDGTIVSTTVAAESAWKKL--------------------CAEYDVDPEKL--FKY-----SHGARSNEIMARF--------FPKLDNSDNKAV 70 
                 5689********9998888888888....................55555555555..555.....5577777777777........223344444444 PP

                 HHHTTHHHHHHHHHHTHHBHTTHHHHHHHHH.......HTTE.EEEEEESSEH....HHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxx.xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 101 allqaralavftiadplkvkpeaaeavasLk.......aagi.evvlltgdnp....etaeraanqlGddyfdaviasdietvakpspegkvaaireLq 187
                   l  ++   +   d+ ++ p+ ++++ sL        + g  +++++t+++p    +  + +++++G  + d  i++ +++ +kp+peg+ +a ++L 
  CCD23869.1  71 KEL--ELSMAYDYLDTVQLIPGSKDLLISLDketgsakEVGQrKWAIVTSGSPylaySWFDTILKEIG--KPDTFITGFDVKNGKPDPEGYAKARDQLC 165
                 444..666666666777777777777766553333322667777*********666556666666666..668889999999****************4 PP

                 ......STGGGEEEEESSHHHHHHHHHTT CS
                 ......xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 188 ......gkpeevamVGDgvnDaaalaaAg 210
                        ++++ ++++D + ++ a+++ g
  CCD23869.1 166 etlkldKEKARYVVFEDAPVGITAGKKIG 194
                 4555768899***************9876 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.4e-06      0.02       3      73 ..     150     222 ..     149     224 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.4e-06
                     STTSSHHHHHHHHHH......---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEE CS
  Hydrolase_like   3 gKPepemydfalevl......gsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddla 73 
                     gKP pe y  a+ +l      + ++++ ++  D     i +++++G+ +v +++  +++e   ++ +++++v++dl+
      CCD23869.1 150 GKPDPEGYAKARDQLcetlklDKEKARYVVFEDA-PVGITAGKKIGAITVGITS-TYDKEV--LFDAGADFVVEDLT 222
                     9**************888877777999*******.99***************66.566655..46789******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.46
# Mc/sec: 1582.23
//
Query:       CCD23870.1  [L=249]
Description: hypothetical protein NDAI_0C02100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-19   69.9   0.0    3.6e-19   69.5   0.0    1.2  1  HAD_2           Haloacid dehalogenase-like hydrolase
    6.1e-09   36.5   0.0    4.3e-07   30.4   0.0    2.1  1  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0028   18.1   0.0     0.0039   17.6   0.0    1.3  1  HAD             haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.024   14.7   0.1      0.044   13.8   0.1    1.5  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0     8e-23   3.6e-19       1     177 [.      15     204 ..      15     205 .. 0.83

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 8e-23
       HAD_2   1 iiFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeee..kieellrkyneekkkkevkpydgvkelLeeLk..... 92 
                 ++FDlDgTl++t +++ +++++l++eyg+   +ee +++  g ++ e+l+k+++  ++ +   + +l ++ + + + ++v  ++g+k+lL++L+     
  CCD23870.1  15 CLFDLDGTLVNTIKASEAVWRNLCKEYGV--NPEELFKHSHGSKTGEILEKFFPALDNTDnkAVRDL-EISMGRDYLDSVFAVPGAKDLLQQLNipspd 110
                 69*************************88..667777888899999********9886553333333.33333333389**************644443 PP

       HAD_2  93 eagyklgivTsksreavee.kleqlgiesyFdvivtsedvekkKPdpeviekalekl........klkkeeviyvGDsptDieaakkagikvia 177
                   + k +ivTs+s+  +   + + lg  +  dv +t+ dv+  KPdpe ++ka ++l         +++ ++i+++D p +i a+k++g  +i+
  CCD23870.1 111 TTERKWAIVTSGSHYIAFGwFKSILGDIEKPDVFITAFDVKTGKPDPEGYAKARDQLaektclktATDQIKTIVFEDAPVGILAGKAMGALTIG 204
                 6889********777665505556677799******************************99988889999******************99987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   9.7e-11   4.3e-07       2     210 .]      13     199 ..      12     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 9.7e-11
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH.HHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgal.tgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrt 99 
                 + ++fD+dGTL+++ +  e v++ +                       +k+ + +  + f +            e l++    p l++++ +a ++ ++
  CCD23870.1  13 DFCLFDLDGTLVNTIKASEAVWRNL-----------------------CKEYGVNPeELFKH-----SHGSKTGEILEKF--FPALDNTDNKAVRDLEI 81 
                 5689*********************.......................88886666466777.....6666667777777..44455555555555555 PP

                 HHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHH.......HTTEEEEEEESSEHHHHH.HHHHHTT.GGGESEEEEHHCESSTTTSHHHHHHHHHHHT.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxx.xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
   Hydrolase 100 vallqaralavftiadplkvkpeaaeavasLk.......aagievvlltgdnpetae.raanqlG.ddyfdaviasdietvakpspegkvaaireLq.. 187
                 ++             d+ +  p+a++++++L+       +   +++++t++++  a     + lG  ++ d+ i++ +++ +kp+peg+ +a ++L   
  CCD23870.1  82 SMGR--------DYLDSVFAVPGAKDLLQQLNipspdttE--RKWAIVTSGSHYIAFgWFKSILGdIEKPDVFITAFDVKTGKPDPEGYAKARDQLAek 170
                 5555........3445555789*********988886433..469****99999999455555**888889999999999****************767 PP

                 ......STGGGEEEEESSHHHHHHHHHTT CS
                 ......xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 188 ......gkpeevamVGDgvnDaaalaaAg 210
                        +  ++++++D + ++ a++a+g
  CCD23870.1 171 tclktaTDQIKTIVFEDAPVGILAGKAMG 199
                 787777335589**************987 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   8.7e-07    0.0039       2      99 ..      16     103 ..      15     151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 8.7e-07
         HAD   2 lfDfDgTLldg.dslelllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpk....lldpgalella 95 
                 lfD+DgTL+++    e+ +r+l         +++ + +++ + ++   +   ++ e le+++ +l+  +++ ++++  ++ r      +  pga++ll+
  CCD23870.1  16 LFDLDGTLVNTiKASEAVWRNL--------CKEYGVNPEELF-KHSHGS---KTGEILEKFFPALDNTDNKAVRDLEISMGRDYldsvFAVPGAKDLLQ 102
                 8**********87777888834........566777777777.222222...4577777777777777777777777444444333335679*****99 PP

         HAD  96 ahra 99 
                    +
  CCD23870.1 103 ---Q 103
                 ...3 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   9.8e-06     0.044       3      73 ..     153     227 ..     151     229 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.8e-06
                     STTSSHHHHHHHHHH........---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEEE CS
  Hydrolase_like   3 gKPepemydfalevl........gsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddla 73 
                     gKP pe y  a+ +l          d  ++++  D     i++++++G+ ++ ++t    p+d+  +++++++v++dl+
      CCD23870.1 153 GKPDPEGYAKARDQLaektclktATDQIKTIVFEDA-PVGILAGKAMGALTIGITTTF--PKDVL-FNAGADFVVEDLT 227
                     9**************77777766556888*******.99*****************88..55544.77999***99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1807.27
//
Query:       CCD23871.1  [L=704]
Description: hypothetical protein NDAI_0C02110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.7e-65  220.1   0.0      5e-65  219.2   0.0    1.5  1  FAD_binding_1  FAD binding domain
    1.5e-28   99.8   0.6    2.7e-28   99.0   0.6    1.5  1  Flavodoxin_1   Flavodoxin
    1.5e-21   77.1   0.0    3.8e-21   75.8   0.0    1.7  1  NAD_binding_1  Oxidoreductase NAD-binding domain
  ------ inclusion threshold ------
      0.011   14.7   0.0      0.021   13.8   0.0    1.4  1  Spore_IV_A     Stage IV sporulation protein A (spore_IV_A)


Domain annotation for each model (and alignments):
>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.2   0.0   1.1e-68     5e-65       2     221 ..     269     493 ..     268     494 .. 0.95

  Alignments for each domain:
  == domain 1  score: 219.2 bits;  conditional E-value: 1.1e-68
                    --BTTB-EEEEEEEEEE---.....-SS--EEEEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSS CS
  FAD_binding_1   2 pfdakkvflakvlknreLtk....pesernvihveldisdsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprle 93 
                    pfd++++++a+++ ++eL k    ++ +rn++h e+dis+s+lkY+tGdh++ +psN  e+V+++l++++ld   d +++l +ld+  ++k+p+l+
     CCD23871.1 269 PFDQTHPYIAPITFSKELIKqigdSKLDRNCVHAEIDISGSNLKYSTGDHVAFWPSNAIEKVNQFLSIFNLDG--DLIFNLTPLDN--TVKAPFLT 360
                    89***************98744446899*********************************************..**********5..9******* PP

                    SEEHHHHHHHTB--SS---HHHHHHHGGG-SSHHHHHHHHHHHH-..HHHHHTTTTT--HHHHHHHHHTT-...--TTS-HHHHHHHS-B---EEE CS
  FAD_binding_1  94 ptTlrqalkyylditgppskqlleaLaefaseeeekqkLekLssd..egakeykelklneartllevleef...psvklplefLlevlpqLkpRyY 184
                    ptT+r+a+ +yl+itgp s+q++++L++fa++e+ k+kL +Ls+d  ++a+e++ ++ n a++l+++++++   ++  +p +fL+e lp+L+pRyY
     CCD23871.1 361 PTTIRTAISHYLEITGPISRQFISQLVQFAPNESIKEKLITLSKDklKFAQEITFKNYNIADALVYLSDDAkdvKWDSVPWNFLIETLPRLQPRYY 456
                    *******************************************************************97652227999****************** PP

                    EB-S-TTTTTTEEEEEEE--EE---SSS--EE-HHHH CS
  FAD_binding_1 185 SiSssskvhpdevhltvvVveyetdgegrirkGvcsn 221
                    SiSsss ++ ++vh+t++V++  ++ +++   Gv++n
     CCD23871.1 457 SISSSSLSERQTVHITAIVEDSINELTNERTLGVTTN 493
                    ********************998889999999**998 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.6     6e-32   2.7e-28       1     143 []      60     201 ..      60     201 .. 0.92

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 6e-32
                   EEEETSSSHHHHHHHHHHHHHHH.TTTEEEEEEEEGTTSC.GGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEE CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelge.hgfnadvvslsdydes.lseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfgl 95 
                   +lY+S+tG++e++Ak+  +el +  g++++  +++ yd++ l ++++++++ + +sT+g+Gd+p+   ++f+++l+ +  ++ed  l++++f +fgl
    CCD23871.1  60 VLYASQTGTAEDYAKKFSKELISkFGLKVMCADIESYDYDsLFQLPSNIVISFFISTYGEGDFPDG-SFSFEQFLTTQI-DDEDNSLTNLQFTMFGL 154
                   89***************99987657889999999999999*99*********************66.559999999985.58889************ PP

                   ECTTSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHHHHHH CS
  Flavodoxin_1  96 GdsayenFcaagkkldekleelGaerllkllegdednqegqeeafrkW 143
                   G+s+ye F+ a+kk  + l+++ a+ l++ +e+d+    +++e++ +W
    CCD23871.1 155 GNSTYEFFNGAAKKAVKYLKGANANLLGPFGEADDGS-GTTDEDYISW 201
                   ***********************************98.7899998888 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   8.5e-25   3.8e-21       1     108 [.     551     668 ..     551     669 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 8.5e-25
                    EEEEGGGGHHHHHHHHHHHHH.CT.....TCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH... CS
  NAD_binding_1   1 miagGtGiaPvrsvlrailee.ak.....dktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells... 87 
                    mi++GtGiaP+r+++r++++  ++     + +k+ l+yG r+e+d+ly+ee+ ++a+kl ++++++ + sr  ++    k++vq+++ e+ ++   
     CCD23871.1 551 MIGPGTGIAPFRGFIRERVKFmENnpdniKLGKHLLFYGSRNENDFLYKEEWPQYASKLGDSFEMIVAHSRIGDK----KVYVQHKVKEYGEEifk 642
                    9*******************954489999889*****************************99999885665555....7*******998888999 PP

                    ....HSSTTEEEEEEC.SHHHHHHHH CS
  NAD_binding_1  88 ....lkkeethvyvCG.ppgMikavr 108
                         + +++++yvCG ++gM+++v+
     CCD23871.1 643 llndQSVGGAFIYVCGdAKGMAQDVQ 668
                    988877899**************997 PP

>> Spore_IV_A  Stage IV sporulation protein A (spore_IV_A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.8e-06     0.021     172     239 ..      47     115 ..      37     119 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.8e-06
  Spore_IV_A 172 vieelkeigkPfvvvlNskkpese.etkelaeeleekydvkvlavnveelkeedikeilekvLyefpvk 239
                  ++ lke++k ++v+  s++ ++e  +k++++el +k++ kv++ ++e+ + + + ++ ++++++f ++
  CCD23871.1  47 LLQVLKEMNKNYLVLYASQTGTAEdYAKKFSKELISKFGLKVMCADIESYDYDSLFQLPSNIVISFFIS 115
                 6788**************99776516899****************************999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4703.70
//
Query:       CCD23872.1  [L=239]
Description: hypothetical protein NDAI_0C02120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-33  113.5   0.4    1.1e-32  113.3   0.4    1.1  1  Med20     TATA-binding related factor (TRF) of subunit 20 of 
  ------ inclusion threshold ------
       0.33   11.9   2.0          6    7.8   0.2    2.2  2  ComP_DUS  Type IV minor pilin ComP, DNA uptake sequence recep


Domain annotation for each model (and alignments):
>> Med20  TATA-binding related factor (TRF) of subunit 20 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.4   1.2e-36   1.1e-32      12     224 ..       5     237 ..       1     238 [. 0.83

  Alignments for each domain:
  == domain 1  score: 113.3 bits;  conditional E-value: 1.2e-36
                 CCS.............HHHHH-EEEEEEEEESSCCSECTTC............BSEEEEEECTTTTSEEEEESSSE....................... CS
       Med20  12 npnaktalqtvtellrslealgatkvgrwalehklyrdtpsclpas..qrpaqpkylqfLslserpnsgfiiisqqpektgtnsqq....splvmttvs 104
                 +       +t+te++++l++ +    ++w++++k+yr+t+s +++     ++++k++++++ls+++n++++i+++++   + ++++    ++l+ +++ 
  CCD23872.1   5 T------PATLTEFKDELSNTLLNILDTWSIDFKTYRSTTSGTSTAiqESNSNSKLMYSITLSHQNNKTVLIKNDTKIAMIMAASKneipTELISNGCI 97 
                 4......45********************************7655595556667**********************98888777334677888888886 PP

                 EEEE-.HSHHHHHHHCT.-SEEE-EEEEEEEE.BEE.SSEEEEEEEEECSSS---EEEEEEE-S...............SS-CCCCHHHHHHCSCTTT- CS
       Med20 105 llsad.slfqilleklqslWcqrqtvkvegggvYel.gdfrvRvgdvfqtqrvrGllvEieyrg............adpdaeyeaaaalireflsklgi 189
                   ++  +++ +l++kl++lW+qrq++k+ gg+++++ +++++Rv+++f+++ ++Gll+E e ++            + +   ++++ + i  +l+kl +
  CCD23872.1  98 SDTNPiPIDVLLNNKLSNLWTQRQSIKGTGGETFQTtNKLLIRVINLFSSTGFKGLLIECEDQStdgitngsqvfhTNNKITFQEKIQTITNILTKLST 196
                 6655427888999********************9999************************998***********977777778888888888888844 PP

                 TSCTT--..........-----EE-SSSS-...CCHHHHHHHHHC CS
       Med20 190 egareai..........lvpdlgkeakealrkagvdlarQYmeil 224
                 +++ +a             ++l+ + ++ l     dl +QY+++l
  CCD23872.1 197 PTSVKAPttttttdykiSMDSLNLDHSDYL----GDLGYQYVRVL 237
                 443333334456666665578888888888....7********98 PP

>> ComP_DUS  Type IV minor pilin ComP, DNA uptake sequence receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.2   0.00067         6      24      71 ..      22      71 ..       5      85 .. 0.79
   2 ?    3.6   0.1     0.014   1.3e+02      26      64 ..     181     219 ..     172     226 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00067
                HHHHHHHHHCTS-....S.GGGGTSS-SB-TTSSEEEEEE-TTTT-EEEE CS
    ComP_DUS 24 qalEryytqngtY..asesaaeklassaasqnkyYtitlakatastytlt 71
                + l+ +  + +tY  +++ +++ ++ s ++++  Y+itl+  +++t  ++
  CCD23872.1 22 NILDTWSIDFKTYrsTTSGTSTAIQESNSNSKLMYSITLSHQNNKTVLIK 71
                4578899999***877778888888888889999*****99999887665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.014
                 HHHHHHHCTS-..S.GGGGTSS-SB-TTSSEEEEEE-TT CS
    ComP_DUS  26 lEryytqngtYasesaaeklassaasqnkyYtitlakat 64 
                 +E++ t ++  ++ s+++++++++++++  Y+i++ + +
  CCD23872.1 181 QEKIQTITNILTKLSTPTSVKAPTTTTTTDYKISMDSLN 219
                 66666666666788999999**************96655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1883.07
//
Query:       CCD23873.1  [L=117]
Description: hypothetical protein NDAI_0C02130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.1e-31  106.5  10.6    1.1e-30  106.3  10.6    1.0  1  V-ATPase_G    Vacuolar (H+)-ATPase G subunit
    0.00042   20.7   8.4    0.00059   20.2   8.4    1.2  1  V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
     0.0023   18.0  10.7     0.0082   16.2  10.8    1.7  1  ATP-synt_B    ATP synthase B/B' CF(0)
     0.0028   17.7   4.4     0.0033   17.4   4.4    1.0  1  S_layer_C     S-layer like family, C-terminal region
  ------ inclusion threshold ------
        0.1   11.4   6.4       0.14   10.9   6.4    1.4  1  RE_AlwI       AlwI restriction endonuclease
       0.18   11.2  14.9      0.078   12.4   6.8    2.0  2  DUF3552       Domain of unknown function (DUF3552)


Domain annotation for each model (and alignments):
>> V-ATPase_G  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3  10.6   3.6e-34   1.1e-30       2     104 ..       4     106 ..       3     107 .. 0.98

  Alignments for each domain:
  == domain 1  score: 106.3 bits;  conditional E-value: 3.6e-34
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH CS
  V-ATPase_G   2 qsqgIqqLLqAEkeAaeivkeArkrkakrlkqAkeeAekEieeyrakkekefkekeaeklgseeelekkieketeekikelkesvkknkeavvkellkl 100
                 +++gI++LLqAE+eA++iv++Ark+++++lkqAk++A+ Ei++y+ +k++e+k++e+++ g+ ++lek++ ++++++++e+ke + ++k++v++ l+++
  CCD23873.1   4 STNGIATLLQAEREAHDIVSKARKYRQDKLKQAKADAATEINNYKLQKDNELKQFESQNEGGVDSLEKEASSKVQTELDEIKEIAFQKKQDVINLLIEA 102
                 789************************************************************************************************ PP

                 HTSX CS
  V-ATPase_G 101 vldv 104
                 v+++
  CCD23873.1 103 VTKP 106
                 *986 PP

>> V-ATPase_G_2  Vacuolar (H+)-ATPase G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   8.4     2e-07   0.00059       9     103 ..      10     104 ..       2     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2e-07
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH- CS
  V-ATPase_G_2   9 eLaerEaeLdqrlEaArkeaereveaAeaeAarilreAeakakalqaeyeqelaeevarireeararaeaeaqavrkraearlqqAvelilkaVl 103
                    L + E+e    + +Ark  + ++++A+a+Aa  +++ + +  +  +++e + +  v  +++ea ++ ++e  ++++ a ++ q+ ++l ++aV+
    CCD23873.1  10 TLLQAEREAHDIVSKARKYRQDKLKQAKADAATEINNYKLQKDNELKQFESQNEGGVDSLEKEASSKVQTELDEIKEIAFQKKQDVINLLIEAVT 104
                   56667888888999*****************98777777776666689*********************************************97 PP

>> ATP-synt_B  ATP synthase B/B' CF(0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2  10.8   2.7e-06    0.0082      38     112 ..      10      85 ..       8     105 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.7e-06
  ATP-synt_B  38 eiaeAeerrke.aaallaeaeqqlkeAraeAaeiiknAkkeaeklkeeieaeaeaeaerlkesAaaeIeqekdral 112
                 ++ +Ae+ + +   ++ + ++++lk+A+a+Aa+ i+n k +  ++ ++ e + e  +++l+++A  ++++e d+++
  CCD23873.1  10 TLLQAEREAHDiVSKARKYRQDKLKQAKADAATEINNYKLQKDNELKQFESQNEGGVDSLEKEASSKVQTELDEIK 85 
                 5566776665524677777788889999999999999999998888899999999999999999988888888765 PP

>> S_layer_C  S-layer like family, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   4.4   1.1e-06    0.0033      49     142 ..      16     110 ..       2     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.1e-06
   S_layer_C  49 kledkvvglalkykgdkladikdkdkvdianyaklkfdDklsvyfkid..eekevelivgekvkvlsadvkaekikakaeqvvkltaPivvLDtEv 142
                 +   ++v  a ky++dkl++ k ++ ++i+ny  l++d++l+ + + +       e+   +kv+ + +++k  + ++k  + + l   +++   Ev
  CCD23873.1  16 REAHDIVSKARKYRQDKLKQAKADAATEINNYK-LQKDNELKQFESQNegGVDSLEKEASSKVQTELDEIKEIAFQKKQDVINLLIEAVTKPSAEV 110
                 4567899999**********************8.********999999444678899999**********99888888887777776677666666 PP

>> RE_AlwI  AlwI restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   6.4   4.8e-05      0.14      92     143 ..      11      61 ..       6     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.8e-05
     RE_AlwI  92 lltdkesieeivnqilkyrkkklkkediiakkkllkekvqenqnetkkietk 143
                 ll  +++  +iv++ +kyr+ klk+ ++ a  ++++ k+q+  ne+k++e +
  CCD23873.1  11 LLQAEREAHDIVSKARKYRQDKLKQAKADAATEINNYKLQK-DNELKQFESQ 61 
                 6667899******************9999************.*******985 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   6.8   2.6e-05     0.078      27      75 ..       9      57 ..       2      64 .. 0.91
   2 ?    6.7   3.4    0.0015       4.3     103     161 ..      50     105 ..      49     116 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.6e-05
     DUF3552 27 kkiaeAeeeAkkiieeAkkeAeakkkealleakeeihklreelekelke 75
                + + +Ae+eA++i+++A+k  ++k k+a  +a  ei +++ + ++elk+
  CCD23873.1  9 ATLLQAEREAHDIVSKARKYRQDKLKQAKADAATEINNYKLQKDNELKQ 57
                56789******************************************97 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0015
     DUF3552 103 kkeesleekekelkqkeqsleekeeeleelveeqrqeLerisgLtkeeAkeilleevee 161
                 +k+++l++ e++   +e  +++ e+e+++ v+++ +e+++i+  +k++  ++l+e v +
  CCD23873.1  50 QKDNELKQFESQ---NEGGVDSLEKEASSKVQTELDEIKEIAFQKKQDVINLLIEAVTK 105
                 689999999988...9999***********************99999999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2015  (0.112388); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 870.22
//
Query:       CCD23874.1  [L=667]
Description: hypothetical protein NDAI_0C02140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.5e-113  378.5   0.0   4.6e-113  378.2   0.0    1.1  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.2   0.0  2.6e-117  4.6e-113       4     462 .]     113     610 ..     110     610 .. 0.94

  Alignments for each domain:
  == domain 1  score: 378.2 bits;  conditional E-value: 2.6e-117
                 -SSSE.EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHH CS
      Aldedh   4 seset.ievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryy 100
                 ++ +t i++++Patg+ +++++++t++++d+ +++A++a+ ++ + ++ +R +iL +++d + ++++ ++++ +++ Gk+  +a+  e+  +++ +++ 
  CCD23874.1 113 QD-STiIQSYCPATGQLLGQFKSMTKSQLDEQIEQAERAQIEFGNSSMDRRFKILLTLHDFIINNQDLITKIACRDSGKTKLDASMgEILVTLEKISWL 210
                 34.4559**************************************************************************999999************ PP

                 HHHHHH.HSEEE..EEEC.....TTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHT....TS-TTSEE CS
      Aldedh 101 aelaek.legev..lpss.....egklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeea....glPkgvln 187
                  ++ ++ l+ +    p +     + k+a +r+ePlGvv+ I++WN+P++ +++ ++  +++GN++++K++e++++s+ +++ l+++a    +  +++++
  CCD23874.1 211 LKHSSRiLSPSKrsGP-TnffmkWYKKAEIRYEPLGVVAGIVSWNYPFHNLLGPIIDSIVTGNAIIMKCSEQVVWSSEIFIDLVKKAliacDEEPNLVQ 308
                 ****995555443322.246677***************************************************************9888878889999 PP

                 E-......-SSTCCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTS...HHHHHHHHHHHHHHGGGGTSTTSEEEEEE CS
      Aldedh 188 vv......tgsgsevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivleda...DldkaveaivkgafgnaGQvCiaasrllv 277
                 +       + s++++++++++ p+++ ++f+Gs++++++i+k  a+ +++v++ElGGk++livl++    Dl++  + i++g+f ++GQ+Ci ++r++v
  CCD23874.1 309 LFyclppsPNSNDDTANYFTSRPQFKSLTFIGSQPIAKQILKCTADPITPVVVELGGKDSLIVLDSFassDLQSLSSIIMRGTFQSSGQNCIGIERIIV 407
                 88888988889********************************999*****************9875556***************************** PP

                 EHHHHHHHHHHHHHHHHT-..-BS-TTS...............TT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TT.E.SB-SSSTTEE--EEEES CS
      Aldedh 278 qesiydefveklveaakkl..kvgdpld...............edtdvGPliseaqlekvekyveeakeegaklllGge.reeaglekgyfvePtvlan 358
                   + y+++++ l ++++ +  ++g++ d               +  d+G++is+++++++e++v++a+++gakl++Gg+   ++++ +g++++Pt+l +
  CCD23874.1 408 SAKHYEKLTQILSDRITFFplRQGSDIDsqssssssssrpnplDIIDMGAMISNNRFKQLEELVQDAVSKGAKLIYGGTpYVHPNYPQGHYFKPTLLID 506
                 ****************8662266776669***********99999**********************************9889**************** PP

                 -TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTE CS
      Aldedh 359 vtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeyt 457
                 vtp+m+iaq+E+FGP+++v+k++d ++++++aN+ ++GL+++vf+kdl+++++va++l++Gnv iNd +t+ +++lpfgG++ Sg+G++gg+egl + +
  CCD23874.1 507 VTPEMNIAQQEVFGPIMCVMKARDTNDCVSLANSAPFGLGGSVFGKDLDECNYVANQLKTGNVAINDFATFYVCQLPFGGIHGSGYGKFGGEEGLLRLC 605
                 *************************************************************************************************** PP

                 EEEEE CS
      Aldedh 458 evktv 462
                 + k+v
  CCD23874.1 606 NAKSV 610
                 **987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4751.68
//
Query:       CCD23875.1  [L=238]
Description: hypothetical protein NDAI_0C02150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-32  113.0   5.4      2e-32  112.4   5.4    1.3  1  RRF       Ribosome recycling factor


Domain annotation for each model (and alignments):
>> RRF  Ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   5.4   1.1e-36     2e-32       2     156 ..      80     237 ..      79     238 .] 0.95

  Alignments for each domain:
  == domain 1  score: 112.4 bits;  conditional E-value: 1.1e-36
                 HHHHHHSS-SSSSCGGGTTSEEEETTEEEEGGGTEEEEESSTTEEEEEESSCCHHHHHHHHHHHSCC-SEEEE...ESSEEEEE--SSSHHHHHHHHHH CS
         RRF   2 kkelsklrtgranpslldnikVeyygkktpLnqlAqvsvkeartllitpfdkslvkaiekaIlksdlglnpqq...dgevlrvpipplTeErrkelvke 97 
                 +k++++ r+g+ n +++d++     g+  ++ ++A++s k++++llit+fd++++k++ ++Il s+l+lnp++   ++++l+v +pp+T+E+r+ ++ke
  CCD23875.1  80 QKKINETRQGKSNSKIFDKLIL-PNGS--KFIDVATTSSKGSHSLLITVFDPKDTKNVISTILGSGLNLNPERipnNDQQLKVLLPPMTTETRELIIKE 175
                 6899******************.5666..8*****************************************96676999******************** PP

                 HHHHHHHHHH.....HHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         RRF  98 akkaaekakv.....airniRrdankklkklekkiseDdvkkaekeiqkltdkyikeidellka 156
                 +kk +e++k      ++  iR+++ kklk+++kk  +D  +k+  +i+kl+++y+ +++e++k+
  CCD23875.1 176 MKKNFEEYKSsslkvSLGFIRNNILKKLKAIQKK--NDSDRKLIADIEKLHKEYVVKLQEQFKN 237
                 ********9999999*****************96..6************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1242  (0.0692732); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1732.99
//
Query:       CCD23876.1  [L=337]
Description: hypothetical protein NDAI_0C02160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-22   79.9   6.4      2e-22   79.9   6.4    2.4  2  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   2.8     0.063   1.1e+03     104     113 ..      86      95 ..      21     135 .. 0.47
   2 !   79.9   6.4   1.1e-26     2e-22       2     131 ..     138     271 ..     137     273 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.063
  FA_hydroxylase 104 tpraHrlHHs 113
                      +++H l H 
      CCD23876.1  86 ATKTHVLTHV 95 
                     2222222222 PP

  == domain 2  score: 79.9 bits;  conditional E-value: 1.1e-26
  FA_hydroxylase   2 llallledfveYwvHrllHrvkllwrrlHkvHHsseaptalaalrahplealllallllllllllg..plsalllvlvlaallelliHsglhvsl 94 
                     ++a+l+ d+++Yw+Hrl+H  k l+++lH+vHH+   p a+ al ++ple +ll+ l + +++l++  ++   +++  +a++ ++  H+g+ ++ 
      CCD23876.1 138 AIAFLIIDTWQYWLHRLMHYDKRLYKNLHSVHHELYVPYAFGALFNSPLEGFLLDTLGTGIAMLITnlSAREQIILYNFATMKTVDDHCGYVLPW 232
                     789****************9767********************************777777777775777889999**************66666 PP

  FA_hydroxylase  95 gwllerllatpraHrlHHskne.egnfgv.llslwDrlf 131
                     +++  ++++ + +H++HH+ +  ++nf++ ++ +wD l+
      CCD23876.1 233 DPFQVLFKNNSIYHDIHHQPFGlKYNFAQpFFIFWDNLL 271
                     77768889999********998899***966999**997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1189  (0.0663171); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2485.56
//
Query:       CCD23877.1  [L=659]
Description: hypothetical protein NDAI_0C02170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-11   42.8   4.1    1.2e-10   41.4   4.1    1.6  1  Sec23_trunk     Sec23/Sec24 trunk domain
    3.1e-06   27.1   2.0    1.3e-05   25.2   2.0    2.2  1  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
     0.0063   15.6   0.1      0.011   14.9   0.1    1.3  1  Tmemb_55A       Transmembrane protein 55A
  ------ inclusion threshold ------
       0.11   12.2   0.5       0.28   11.0   0.5    1.7  1  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal


Domain annotation for each model (and alignments):
>> Sec23_trunk  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   4.1   2.6e-14   1.2e-10       7     241 ..     111     369 ..     106     372 .. 0.67

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 2.6e-14
                  EEEEE-SHHHHHHTHHHHHHHHHHHHCTTSST.....STT-EEEEEEESSSEEEEETSTTS.........SSSEEEEECHTTSCC............. CS
  Sec23_trunk   7 lFviDvsleaikegelkalkeslkqsLdllPe.....epralvglitfdsvvhffelksel.........rqpkelvvsdlqdvf............. 77 
                  +FviD+  +   ++el+alke+l+++L++ +e                ++ +h++ l s++         +++k+                       
   CCD23877.1 111 VFVIDTICD---KQELNALKENLIKNLENYSEkngnnL----------NENMHLYALISTNsdgtikihySNKKDS--------Ivfsmdsfktkyys 187
                  8********...9******************5344440..........5666666655544433333333333333........22233333466667 PP

                  ..........SSTSSSSSEETTTTHHHHHHHHHHHHH....HSTT-TTC-----HHHHHHHHHHH...HCHCT....S-EEEEEEESS---SSTTTSS CS
  Sec23_trunk  78 ..........lpladrlLvplseseavledlLeelpe....mfavtagkrperalgpalkaavel...lkave....tggkiivfvgslptvgaggkl 154
                              + ++ L+  +++++ +++    l++       +t  krp+r++g al +a  l   l++++      + ii f ++++t g+g++l
   CCD23877.1 188 erfnfryfidKITMNNQLCYFQNIRDLIKE----LNSleitSSITTRTKRPKRSFGLALFLATVLvtkLQCSQdtdwNNSMIISFLTGPCTKGPGKVL 281
                  776775555533334445555555555554....443310223334469***********99888233555558888899**************8888 PP

                  -SBTTS.....CCTSSTTCH..HCHSCSSSCHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHHHHTTT-EEEEETTTCCHHHHHHHHHHHHH CS
  Sec23_trunk 155 ksrede.....slldidkek..aklvkkadkfYkkLakecvkqgisvDlFlfsldyvdlaelkqlaeltgGqvvlydsFsaekdasklkqdlkr 241
                  +++ +      +  + +k++  ++ +k+++kfY+kL    +  +++  l+++sld+v+ +e+++l + ++ +v+ +d F+    +s++   lk+
   CCD23877.1 282 SRDYKInmrqfNNFNGNKNNsiISDLKSSKKFYDKLFRH-SFGKVAHHLYISSLDQVGFLEMSSLYKDSA-CVQQFDTFT----GSRFMICLKK 369
                  877665677664444455541245589999******765.55578899******************9987.889999999....6666555554 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   2.0   2.8e-09   1.3e-05       1      37 [.      45      80 ..      45      82 .. 0.93

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 2.8e-09
  zf-Sec23_Sec24  1 PirCrrCraylNpfckidfggkrwiCnfCnhknevpp 37
                    P+ C +C a+ N +++i++  ++ +C+fC++ +++++
      CCD23877.1 45 PLKCDHCDAFFNQYSSIIQP-SSLRCPFCEKITPIQS 80
                    899**************999.9***********9976 PP

>> Tmemb_55A  Transmembrane protein 55A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.4e-06     0.011     129     191 ..      25      90 ..       2     101 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.4e-06
   Tmemb_55A 129 nLgPveag.pvspelqpvgvrviCghCkntfl.ftels.rtlarCPhCrkvssvGrryarkrslll 191
                 +L+P + + p+s++ +     + C hC   f  ++++   +  rCP C k+  + +++++  + ++
  CCD23877.1  25 ELEPNNDSiPISEKNNDSINPLKCDHCDAFFNqYSSIIqPSSLRCPFCEKITPIQSSFTKYATDTI 90 
                 5667644327778888888899*****9988524444448899************99998766555 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   6.2e-05      0.28      17      52 ..      40      74 ..      34      76 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.2e-05
  zinc_ribbon_10 17 aknryalICskChshnGlapkeeleevkyrCpkCga 52
                     +++++l C +C   ++++ ++  ++ + rCp+C  
      CCD23877.1 40 NDSINPLKCDHCDAFFNQY-SSIIQPSSLRCPFCEK 74
                    57889999***********.**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4526.84
//
Query:       CCD23878.1  [L=551]
Description: hypothetical protein NDAI_0C02180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-40  135.8   3.4    1.3e-39  135.0   3.4    1.4  1  Brr6_like_C_C  Di-sulfide bridge nucleocytoplasmic transport 
  ------ inclusion threshold ------
        1.6    7.2   5.7        2.8    6.4   5.7    1.4  1  RRN3           RNA polymerase I specific transcription initia
        3.7    8.6   0.0        3.7    8.6   0.0    3.9  3  DUF4834        Domain of unknown function (DUF4834)


Domain annotation for each model (and alignments):
>> Brr6_like_C_C  Di-sulfide bridge nucleocytoplasmic transport domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   3.4   2.2e-43   1.3e-39       2     132 ..     369     500 ..     368     501 .. 0.98

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 2.2e-43
  Brr6_like_C_C   2 sylqllfnlllvllllylvisfvltikkDiekkleekkaellaeieeCkkeYeeNkCdpetrvpaleekCeewekCmnrdp.eskverakvsaetl 96 
                    sylq+l+n+++++++++ +i f+ +i++D+++ ++++k+el+ e++ Ck++Y  N+C+ ++++pale++C++w++Cmnr++  ++ +r+ ++a+++
     CCD23878.1 369 SYLQILLNFITTMIIISSLIIFINSIRNDLNSIWTTRKNELEIESKICKEKYFLNRCHLHSKLPALETQCATWSDCMNRNNdIFFRARSILTAKLV 464
                    7*******************************************************************************9877899********* PP

  Brr6_like_C_C  97 aeiinsfvepislktllfllllllivlfvsnvafgf 132
                    ++iinsf++pi +k l+++l+ l+i++f+sn+++gf
     CCD23878.1 465 GDIINSFIDPIGWKPLFVILFGLAIWCFSSNFLLGF 500
                    *********************************997 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.7   0.00047       2.8     219     295 ..      96     235 ..      88     277 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00047
        RRN3 219 dlddeedeeleeelee.......................................................deddedddeddeesdlddlssdeeaeed 262
                 d+dd+++e++ +e+e+                                                       +   +++++d+e +d+d+ls  ee+e++
  CCD23878.1  96 DIDDDIEENDAQETEQesrringtpvattssssgvqfngnnfkvpikkkkasvhfvepkrnfarrnnetphT---DKENNDEEANDDDELSGAEEEEGE 191
                 4555555544444444556678899999**********************************9999886531...333333344444444444444444 PP

        RRN3 263 ee.kdeeeesl..........kkikelvekLDailtllfehlek 295
                 +e k+++ +++          k + + ++k+D+i +l +e  +k
  CCD23878.1 192 DEeKNNKLSNTtmlkallsptKLGVAAATKIDGITHLPIEEEKK 235
                 33233332222123444444466666777777777776666655 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   7.2         3   1.8e+04      45      79 ..     159     194 ..     104     203 .. 0.57
   2 ?    1.5   0.2       0.1     6e+02       3      24 ..     374     396 ..     369     420 .. 0.68
   3 ?    8.6   0.0   0.00062       3.7      14      66 ..     482     538 ..     475     549 .. 0.34

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 3
     DUF4834  45 qfgnstnsnqqksqsrsetkeeg.eiieeersekea 79 
                 +++n+t ++ +++++++++++++ +  eee+ e+e+
  CCD23878.1 159 RRNNETPHTDKENNDEEANDDDElSGAEEEEGEDEE 194
                 223333333333333333332221222222222222 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.1
     DUF4834   3 fLlfi.lifiiailviglsilsv 24 
                 +L fi +++ii  l+i +  +++
  CCD23878.1 374 LLNFItTMIIISSLIIFINSIRN 396
                 57788656666666666655554 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00062
     DUF4834  14 ilviglsilsvilrtvfglgsrkkss....ksaqkqfgnstnsnqqksqsrsetkee 66 
                 ++++gl+i  +  + ++g+ + k  +    k +++q++++++++q ++++++e++++
  CCD23878.1 482 VILFGLAIWCFSSNFLLGFARAKIYYgdpvKYYHHQKQQQQGQDQGQKSQEREHNQT 538
                 334444444444444434333222223333222222222222222222211221111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1312  (0.0731775); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3849.64
//
Query:       CCD23879.1  [L=587]
Description: hypothetical protein NDAI_0C02190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-98  330.3   0.0    1.8e-98  330.0   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.0   0.0    1e-102   1.8e-98       5     460 ..      87     569 ..      83     571 .. 0.91

  Alignments for each domain:
  == domain 1  score: 330.0 bits;  conditional E-value: 1e-102
                 SSSE.EEEEETT.TCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH.HTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHH CS
      Aldedh   5 eset.ievinPa.tgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlle.erkeelaeletletGkplaeara.eveeaidvlry 99 
                 ++++ +e  nPa ++e++a+v++at  dv++a++aA  a+++w +l++++Ra+i+ kaadl+  + + ++ ++ +l +Gk++ +a+   ++e  d++r+
  CCD23879.1  87 SKRSfYEQRNPAdHKEILANVTQATDLDVKDAINAATLAKQKWYQLSFYDRAAIFLKAADLIStKYRYDMLAATMLGQGKNVYQAEIdCITELSDFFRF 185
                 3344599*****888999********************************************9566889999999************8899******** PP

                 HHHHHHHHSE.EEEEECTTEEEEEEEEE-.SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCH CS
      Aldedh 100 yaelaekleg.evlpssegklalvrrePl.GvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsev 196
                  +++a+kl++ + ++s++g  +   ++Pl G+v a++P+Nf ++ a    apal+ GNtvv+KP++ ++ls +ll  ++eeaglPkgv+n+++g+ +++
  CCD23879.1 186 NVKYAHKLYKkQPIQSATGVWNKAEYRPLeGFVYAVSPFNFTAIAANLIGAPALM-GNTVVWKPSQSATLSNYLLLTVLEEAGLPKGVINFIPGDPESI 283
                 *******88856677789***********************99998888888887.******************************************* PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHHHHCT........TSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHH CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiakaaakn........lkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefve 287
                  +++++++++ +++ftGst+v ++++ + ++         + r++ E+GGkn ++v+++++l +a+ ++++gaf ++GQ+C+a+srl++++s  +ef++
  CCD23879.1 284 TNEVLNDKNFGALHFTGSTNVFKQLYGKIQNGimdgkykdYPRIVGETGGKNFHLVHQNCNLTNAIFSTIRGAFEYQGQKCSATSRLYLPSSKSEEFLN 382
                 **************************9977443334444469********************************************************* PP

                 HHHHHHHT--BS-TTS.........TT-SB---SSHHHHHHHHHHHHHHHHT.TSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEE CS
      Aldedh 288 klveaakklkvgdpld.........edtdvGPliseaqlekvekyveeakee.gaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVls 376
                  +++ +k+ ++    +          +  +GP+i+e++++k+ k++e+ake+   ++++Gg   + +++kg+fv Ptv++  +p+++ +++E FGP+l+
  CCD23879.1 383 DFANILKQGNMIPVNTaagtisggdLHGFMGPVIHEQSFNKLVKVIEDAKEDpDLEIVYGG---QYDKSKGWFVGPTVIKCKDPKHKYMTTEFFGPILT 478
                 ****9998777553223445555446889********************997579******...7899******************************* PP

                 EEEESS..HHHHHHHHHSSS.EESEEEEE-SBHHHHHHHHHHS..-SSEEEESSSST--TTT.SEB--CGGGEES-BSH.HHHHHHTEEEE CS
      Aldedh 377 vikfkd..eeeaieiaNdte.yGLaagvftkdleraervaerl..eaGnvyiNdsttgaaea.lpfgGvkqSglGregg.kegleeytevk 460
                 v+++ d  + ++ +++N+t  yGL++++f+kd + ++ + e+l   aGn yiNd++tga+ a + fgG ++Sg+++++g ++ l++++ ++
  CCD23879.1 479 VYEYPDgeFSQVCDLVNETSiYGLTGSIFAKDRDIINLADEKLkfAAGNFYINDKCTGAVVAqQWFGGARMSGTNDKSGgENILSRFVSIR 569
                 ****954499*******9855************99999999996689***************9************6655499999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4340.89
//
Query:       CCD23880.1  [L=397]
Description: hypothetical protein NDAI_0C02200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-31  107.3   5.0    4.1e-31  107.3   5.0    2.1  3  Pih1_fungal_CS  Fungal Pih1 CS domain
    8.4e-20   70.9   2.6    3.9e-19   68.7   0.4    2.4  2  PIH1            PIH1 N-terminal domain


Domain annotation for each model (and alignments):
>> Pih1_fungal_CS  Fungal Pih1 CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.7   1.5e+04      39      60 ..      52      73 ..      41      76 .. 0.59
   2 ?   -3.5   0.1       1.8   1.6e+04      36      46 ..     173     183 ..     156     187 .. 0.54
   3 !  107.3   5.0   4.6e-35   4.1e-31       2      89 .]     309     397 .]     308     397 .] 0.98

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.7
  Pih1_fungal_CS 39 akeneLiiknlntqeykekklk 60
                    + ++   ++n++++   +kk+ 
      CCD23880.1 52 PVSKPFAVSNNKNKFIPNKKIF 73
                    5555566666665555566655 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.8
  Pih1_fungal_CS  36 sYdakeneLii 46 
                     + + k+n+L +
      CCD23880.1 173 KLKFKKNNLNV 183
                     34444555544 PP

  == domain 3  score: 107.3 bits;  conditional E-value: 4.6e-35
  Pih1_fungal_CS   2 leyevtmkktkdtekykLrieieselesskdlevsYdakeneLiiknlntqeykekklkipLPnifke.eekelksffvkkekkLyifi 89 
                      ++evtm++tkdt+kykLriei+sel+ss+d++++Y +++neLi++nl++ e+ke+k+kipLPnif+  ++ e+k+ff+k+++ L+i+i
      CCD23880.1 309 PDFEVTMRRTKDTTKYKLRIEIKSELKSSLDIKIEYFKDDNELIVENLDLVEFKEEKIKIPLPNIFDIkNVMECKCFFIKRDRLLVIYI 397
                     68******************************************************************9*******************8 PP

>> PIH1  PIH1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.026   2.4e+02      22      40 ..      27      45 ..      21      49 .. 0.80
   2 !   68.7   0.4   4.3e-23   3.9e-19      43     151 ..      69     178 ..      55     187 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.026
        PIH1 22 ggdvkfvkPepgfvvktsv 40
                ++++  +kP p fv+k+++
  CCD23880.1 27 ENKIISLKPVPKFVIKSKI 45
                4567778*********986 PP

  == domain 2  score: 68.7 bits;  conditional E-value: 4.3e-23
        PIH1  43 eeKvFiNvcsseeiekP..eeeeetdeengktglkwriPyslgqaredkdkkgkkckvyDvvfhpdtlklaekdkefrklvistaleaieqkfevkLdr 139
                 ++K+FiNvc ++ i+kP  + ++++ +       kw+iP+  ++ r d+dkk+++c v D +++ + lk +  d ++r+++i+ +le +e + +++++r
  CCD23880.1  69 NKKIFINVCYNDAIPKPsiDFSPNIVYP-LIMSDKWEIPILTSSCRLDCDKKKDTCYVWDCIINTECLKWCLDDLQLREILIEWCLESVEISDNLSINR 166
                 45***************77666666666.57899****************************************************************8 PP

        PIH1 140 kelkvlklkykG 151
                 + +  +klk+k 
  CCD23880.1 167 DTISLPKLKFKK 178
                 888888****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       974  (0.0543254); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 3370.54
//
Query:       CCD23881.1  [L=554]
Description: hypothetical protein NDAI_0C02210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-28   97.4   1.6    7.9e-25   87.8   0.2    2.3  2  AA_kinase  Amino acid kinase family
    1.7e-12   47.1   0.0    3.6e-12   46.1   0.0    1.6  1  PUA        PUA domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.2   8.8e-29   7.9e-25       2     193 ..      32     209 ..      31     227 .. 0.88
   2 !    8.6   0.1   0.00015       1.3     206     241 .]     297     331 ..     279     331 .. 0.78

  Alignments for each domain:
  == domain 1  score: 87.8 bits;  conditional E-value: 8.8e-29
                 EEEEEE-TTCCCCTCC.....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHH CS
   AA_kinase   2 rvVvKlGGssltdkee.....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaalla 95 
                 ++V+K+G+ssl d+ +     + + +++e ++ lk+ g+k+++V++gg ++ gl +  + +++                  + +ala++g+  + ++++
  CCD23881.1  32 TIVIKIGSSSLVDNVTrepklSIMTKVVETVSCLKKLGHKVIIVSSGG-IAIGLNSM-NIINKPQVL-------------SEIQALAAIGQGKLISMWE 115
                 69*******88855556******************************5.44444444.233333333.............233**************** PP

                 TTHGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTC CS
   AA_kinase  96 aglpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkv 193
                  +++++  ++a++++t++++    + n  ++ +++i+ ll+ +vvp+++++++l+  +   +g++D ++a+  ++++Ad+l ++tdVd +y+ +p++ 
  CCD23881.1 116 MLFRQYDQKVAQILLTRNDI---LNWNQFKNAQNTINALLNLNVVPIVNENDTLSISEI-KFGDNDNLSAITSVLINADYLFLFTDVDCLYTENPNQL 209
                 ********************...*****************************9999977.59*********************************975 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00015
                 HCHHCSSS.TTTHHHHCHHHHHHHHHCTT-EEEEEE CS
   AA_kinase 206 eaeesaselatgGmkvkhpaalaaarrggipvvItn 241
                 ++ +s s+ ++gGm +k+ aa  a + g i+++I+n
  CCD23881.1 297 TLNKSGSNIGSGGMTTKIMAAELATNVG-IHTIIMN 331
                 33337899*****************999.****987 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0     4e-16   3.6e-12       1      73 [.     444     534 ..     444     535 .. 0.87

  Alignments for each domain:
  == domain 1  score: 46.1 bits;  conditional E-value: 4e-16
                 CEEEE-HHHHHHHHT.....T-EEEGGGEEEEETT--TTSEEEEEETTS............CEEEEEEESS-HHHHHHHCTSE.EEEEEEE CS
         PUA   1 grvvvddgAvkalls.....gasLlapGvvevegdfeegdvVaivdedg............elvavGlanysseelakikggk.sveierv 73 
                 g +++d+++++ l s        Ll++ ++++e++f+e ++V+++ ++             +l++++++ny+s e+ kikg+k s +ie++
  CCD23881.1 444 GSIIIDNESYNDLISsttkeYEGLLPKDIIDIEDNFHELECVEVKVGQKlpngqlnyeiplKLIGRARCNYTSLEINKIKGLKnSNQIEDI 534
                 6799******9999988754559************************6667779**************************76516666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       958  (0.053433); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.37
# Mc/sec: 4470.83
//
Query:       CCD23882.1  [L=308]
Description: hypothetical protein NDAI_0C02220, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-19   70.0   0.2    2.7e-19   69.2   0.2    1.4  1  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    1.5e-12   48.0   0.0    2.5e-12   47.3   0.0    1.3  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
      5e-11   42.8   0.0    1.1e-10   41.7   0.0    1.5  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.2   4.6e-23   2.7e-19      58     137 ..       2      89 ..       1      90 [. 0.93

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 4.6e-23
                 HHHHHHHHCCT-CEEEEE...EB-HHHHHHHHHHCC..ECEEEEE--TTS-TTCCC...EEEEETTTCE--CHHHHHHHHHHCCT-EE CS
   PGM_PMM_I  58 ealaaglaanGvevillg...llptPavsfairklk..adagimitaSHnppeyng...iKvylsnGgpispeveekIeaiiekeeea 137
                 +++aa+ aanGv+++++g   ll+tPa+s++ir+++  + +gi++taSHnp+++++   iK++l+nGgp++++v+++I +  +k +++
  CCD23882.1   2 NKIAAIGAANGVKKLIIGqngLLSTPAASHIIRSYHekVTGGIILTASHNPGGPENdlgIKYNLANGGPAPESVTNAIWEVSKKLTSY 89 
                 6799******************************7767*************99988888*********************99998876 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   4.2e-16   2.5e-12       2      99 ..     122     229 ..     121     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 4.2e-16
                 HHHHHGGGTS-....HHHHHHH....T-EEEEE-TT-TTHHHHHHHH.HHTT-..EEEES-----TT-TTSS----TT-TTTTHHHHGGGGG-SEEEEE CS
  PGM_PMM_II   2 aYiealkekvd....seaikks....glkvvidplhGaggeilkell.kelgv..dvvelnaepdpdfptkapnpeekealkllielvkkegadlglaf 89 
                 aY+e lke++d    ++ i+k+    + k+++d l+G +g +   ++ +e+g+  d v  n +p pdf++ +p+p+   + k l+e v+ke+ ++g+a 
  CCD23882.1 122 AYVELLKEIFDfdliKNFIQKQretkNWKLLFDSLNGITGPYGHAIFvEEFGLpaDEVLQNWHPKPDFGGLHPDPNL-TYAKTLVERVDKEKIEFGAAS 219
                 7888888888888884444444444499*****************9835599999999************99*****.********************* PP

                 -TTS-BEEEE CS
  PGM_PMM_II  90 DgDaDRlgvv 99 
                 DgD+DR ++ 
  CCD23882.1 220 DGDGDRNMIY 229
                 ******9986 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   1.8e-14   1.1e-10       2      58 ..     239     297 ..     238     302 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.8e-14
                  HHHHHHHHHHHHHCH..CSTTTC.EEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHH CS
  PGM_PMM_III   2 gdqllallakyllee..klkpga.gvvktvmtslalervakklgiklvetkvGdkyvlee 58 
                  gd++ a++a+y+ e    +k+g  g++++++ts a++rva+k+g+k++e+++G+k+++++
   CCD23882.1 239 GDSV-AIIAEYASEIpyFKKQGIyGLARSFPTSAAIDRVAAKHGLKCYEVPTGWKFFCAL 297
                  5665.56667776667866667779********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2375.76
//
Query:       CCD23883.1  [L=1738]
Description: hypothetical protein NDAI_0C02230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
          0 1530.3  84.4          0 1529.4  84.4    1.4  1  Nup192    Nuclear pore complex scaffold, nucleoporins 186/192


Domain annotation for each model (and alignments):
>> Nup192  Nuclear pore complex scaffold, nucleoporins 186/192/205
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1529.4  84.4         0         0       1    1694 []       3    1728 ..       3    1728 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1529.4 bits;  conditional E-value: 0
                  .HHHHHHHHHHHHHHHHTTXTTHHHHHHHHHHTHHHHHHTTXX..XXXXHHHHHCHCC..XSEEEETTE..................EEEXXHHHHH CS
      Nup192    1 WspeafkeLynsieaassnpesldelelllkklkqdLknllkn..ppkneksRsqlkkektgkitlsdg................s.eyklnqefiq 78  
                  Ws+++f++Ly+sie  +++    d   +l+k+l++dL++l+ +  +pkn+ksR q+++   gkitl+d+                + +y+l q+fi+
  CCD23883.1    3 WSTAPFQKLYDSIE-NDQF----DY--NLFKELLPDLQQLNLTndKPKNQKSRAQVES---GKITLADNniitnddendtnnnhnTiTYNLKQQFII 89  
                  **************.6776....55..99*********9998889***********88...777766532222222233333332578********* PP

                  HHHHHHHHHTXXHHHHHHHHHHHCTHHH.........HTTSXHHHHHHHHHHHHHHHHHHHHHHHHHHHT..XTTSXHTTXXXXXXXXXHHHHHHHH CS
      Nup192   79 ealiLSdeldLdElaaaeLlltaqeqqan........kpglslgevAvllYydrrkyilqiLryllqvaseeeedeekllsswsteatklvtniles 167 
                  ++++LSdel+LdEl++a+L+l+  e++ n        ++ ++l+ +++ +++ rr++ilqi  +ll++ ++++ + ++l++      ++l +nil+s
  CCD23883.1   90 ATISLSDELNLDELIVAQLILSDLEKS-NlldsldslDNATTLIISGKRQFFFRRQFILQITAFLLNCLDTSNPILQELVQ------DSLKNNILKS 179 
                  *********************877644.45999999999*******************************99999888887......79******** PP

                  HHHHHHHHHHHHHHHHHHHHHHHHSXXTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXXX.HHHHHHHHHH.HHHXXXXSHHHHHHHHHHHHHHTS CS
      Nup192  168 lkeikqllsklkdlldkadvlkeiqknrflgsikfrrdlLekehelLaqilfglvaqsgle.kedilkllkhLakkldknDdltlhllpallaafss 263 
                  +++i+q+l+++k++++ka++l++ +++ f+++ikf+rd+L+ke+++L+qil+gl+++++l   +di+++++h+ ++l+ nD +++++lpal++af++
  CCD23883.1  180 FESIHQQLEDIKQSINKAKILENNNDPIFIQNIKFKRDFLLKEYDTLSQILTGLINKNFLLnYNDINNIINHIITSLNPNDYFIIYYLPALFNAFNK 276 
                  **********************************************************99989********************************** PP

                  SSSXXXHHHHHHHHHHHTSSSTTS.SSHH.............HHHHHHHHHHHHHGGGHHHHHHHHHHHH..........HHHHHTTHHHHHHHHHH CS
      Nup192  264 ledlsvledvrelhekitkrleee.plvsdeeidlskwklkglkaaiklvflleligwckqepeertkkfdfkedieklieeaiedgafefllsvaa 359 
                  led ++ +dv+ l+++++k+l+++ ++++           +++k++++++fl+ +i wc ++p+ rtk +dfk+di+ +++  +e ga+e+ll++aa
  CCD23883.1  277 LED-MPSNDVNLLYSNFIKDLKNNdSIYE-----------QPIKVTLIFIFLTLFIDWCNSNPTVRTKDLDFKTDIDYPMMLTVELGAIEQLLIIAA 361 
                  ***.*****************8888****...........********************************************************* PP

                  HHSX..XSSXXGGGTTTTXXSXXXSXXXXSXSXX............................................................... CS
      Nup192  360 etsa..kewedslrydfrslLqrkiprltpekll............................................................... 391 
                  +ts+  ++++++l yd+rslL+++ipr+ p +ll                                                               
  CCD23883.1  362 DTSEfmNDQTLELIYDIRSLLETHIPRFRPIQLLddpvdyenasnndnnnnntqhphsitnnfsysdaintkkgitpsenknlkysniaqsqynnir 458 
                  ************************************************************************************************* PP

                  XXHHHHHHHHHHHHHHHHHHHHHXHHHHHHHHHHHHHHH..HHXTTS.............TXXXHHHHHHHHHHHHHTTXHHHHHHHHSXTTSHHHH CS
      Nup192  392 lseefeefllrrlhtlitdfIsnmafvLtkLRdreedsllsveslqqegleppanleediaqkadLErfllliaylYenrpelaleFWsdkesnlyg 488 
                  lse++++fl++ +h++++++I+n+af+Ltk++d eedslls  +l+           +dia+kadLErf+++i+++Y++rp++++eFW+dkesn+yg
  CCD23883.1  459 LSEQTQDFLVSSFHNVLQKVITNCAFLLTKIKDTEEDSLLSEADLTL----------DDIAAKADLERFFITIYFFYASRPTYSNEFWKDKESNAYG 545 
                  *********************************************66..........47************************************** PP

                  HHHHHTSSXXHHHHHH.HHHHHHTTXSSHHHHHHHHHHHCXTTXSSXSSTTTBXXSHHHHHHHHHHHHHHHXX.XX.....XX.XXXXXXXX..... CS
      Nup192  489 Fiewassllpsplika.flkMLssLssgeenaraafnlLkdnsssagkkkrsssvswdhifksLsyYidklqe.pe.....ndlklrqkkqe..... 573 
                  Fiew+ s+++++l+++ f++M+ssLs g+en++++f+++ +ns           vsw++i+++L++Y  ++++ p+     ++l      ++     
  CCD23883.1  546 FIEWS-SKCTDSLMRScFYLMISSLSFGQENSTNVFHYFGNNSI----------VSWSTIVQCLKEYNLRISNlPNvihqrQNL------EQdtdss 625 
                  *****.**********************************9886..........**************9994433344333333......2234456 PP

                  .................XXXSXXXHHHHHHHHHHHHHHHHHHHHXHHHHHHHHCXTTTXHHHHHHHHHTSSXXHHHHHHHHHHHHHTTSXXHHHHHH CS
      Nup192  574 ........neesiyrsraieeeleeeeivflsaflrLissvaknseearkallenaswqfldvllgLlsckvptpLkaailktLsaLvkkseeeaak 662 
                          ++e ++ + a ee+l+ee+++fls++l+L++sva ++++   +++ + s  f+d +++++  k++tpL++a++ktLs L+++s +++ +
  CCD23883.1  626 sssssataTKEIDSLAIAFEEGLNEETTIFLSSLLTLVGSVAFDVQS---DIKISLSGLFMDPIFEFA--KLETPLSGACFKTLSYLLPSSIDARLN 717 
                  678889999999***********************************...******************..*************************** PP

                  HHHHHHHHHHXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHTSSHHHHHHHHHHHHHHTSXTTXSSSX.....XSSXSSXTTTTTTTSSSSSHHHHHH CS
      Nup192  663 iWrsLDrwifkgsqllptvpttsakkqsgsleekeafesrletysevraflqLlkaLlqplesesea.....kgklpfPedLGagyRkpGiepYldf 754 
                   W+sLD+++fk+++l++t         ++s+  ++af   l+t+se+++fl L+++Ll+   ++ ++     +gk +fP++LG+ yRk Gi+pY+d+
  CCD23883.1  718 YWQSLDSILFKNVSLTNT---------TDSY--RSAFGYTLKTFSEIVGFLSLFNNLLKINPQDINEnghlsFGKQNFPSKLGQVYRKMGIWPYFDY 803 
                  *****************9.........8999..*************************8433333336999************************** PP

                  HHH.HHHTGGGGXXXHHHHHHHHHHHHHHHHHHHHTSXHHHHHHHCCTTTTSSSSTTCHHHHHHHHHSTHHHHHHHHTSHHHHHHHHHHHXXXHHHH CS
      Nup192  755 vldevflkstrdlkdpaekwelqlsclelletsLasfdpslllfseqaginldslvstsdlatyvklhgfaavlnllfkekvlklllkiieegvdel 851 
                  +l+e+f+ s+  + ++ +++++q+++le++etsL sfd+s++l+s + ginld+lv+tsd++tyv+++++ +v+n lf ++v++ l++ii++g+d++
  CCD23883.1  804 ILNEIFVPSKL-ILNDFDRRAIQTPILEIIETSLLSFDYSAILNSITLGINLDTLVNTSDFFTYVQESPAPVVFNHLFAQNVHSTLFAIIDIGIDHI 899 
                  ***********.************************************************************************************* PP

                  HH.SXTTSHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHH..HHHCXXXXXXXSXTTXSSHHHHHCCXTHHHHHHHHHGGGTXHHHHHHHHHHHHHH CS
      Nup192  852 dsyasgkseleelvllaLeilekvLelQetfleellpilk..kkeniyrpknvgsaglssfedillfnLslvlnialYvgldnpeialaslkiLeki 946 
                  +   +g + +  l+ ++++i++++L+ Q tf+eellpi+   +++++y+pkn+g++g +sf+d+++fnL++v++++lYvgld+ ++ ++slk+L+k+
  CCD23883.1  900 SIDLEGGKDQMNLLTRSIKIINLILDFQGTFTEELLPIIIkqENKSYYIPKNFGLHGFRSFYDTIFFNLPVVAHLGLYVGLDDTSLVSESLKVLKKL 996 
                  **55559999*****************************9787789*************************************************** PP

                  TTXTTGGTSSXXXXXXSXHHHHHHHHSSXHHHHHHHHHHHHHSXX.XTTTTTSXHHHHHHHHHHHHHHHHHHSSTTSXXHHHHHTTXXXBTBXXXX. CS
      Nup192  947 ssspkvsassasrllkknklltvfesvdeserIkqgfveqLeaeiedeeqeeeeealqiKlaILdlLnsnLsasskeptvahfLLGfdvrndlslgn 1043
                  s +   s s+ ++l++knkl t+f++vd+s+rIk++f++qLe +ie++ q      l++K+++L+++nsnLs ++ ++tvahfLLG + +n +slg 
  CCD23883.1  997 SLN---SPSNGTDLNSKNKLFTIFDAVDDSARIKDAFISQLEVPIENDGQ------LSLKIQLLNFINSNLSFTKPAVTVAHFLLGLQASNGISLG- 1083
                  **9...777899**********************************9999......****************************************. PP

                  ..TTSTTTTTXSHHHHHHHHHTTXXXXXTTSX......BXHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT.THHHHHHHHXXXXXTTXXBTTB CS
      Nup192 1044 eqqsgviasqssllhsllsllesslelisegdksrgskideaparLaekileillkLcrnpltseltLryLretefllrhllslppkidentlWngq 1140
                  ++++++i+s+ sll+s++s+lessl+ +++++      i++ap+rLa+ +lei+lkLcrnplts+l L+yL ++ ++++++++++++i++ t+W+g+
  CCD23883.1 1084 PELPTFINSDVSLLNSIVSILESSLDIVTPEQ------IQYAPMRLASISLEIILKLCRNPLTSSLLLDYLTNQ-HFFERIMEIDVHITKFTQWDGK 1173
                  9***************************9955......**********************************99.********************** PP

                  XTTS......TTSTTSTTHHHHHHHHHHHHHHHHHHHHHTTTTTSSSXHHHHHHHHHHHHTEEXSSSSE..XXXTTTSXXSXXTTSXGGSXXXXHHH CS
      Nup192 1141 efdgslss.nkeflssesigallsFlnqrslllqylslelhslsqsgstskkkrlvdlLlgsntaeeeengspkildlLdvlnfefkekeeqpqlef 1236
                  +fd+ + +   +fl+sesigall+Fl++r++l+qyl l +h++s  g++  + ++v+ L+ ++       +s++i+++Ld+ln+e+    e+  +++
  CCD23883.1 1174 SFDSLSIDsGFDFLQSESIGALLAFLSYRNYLIQYLGLFIHRCSFMGTKRNILTYVNFLITNK------IYSTRIFSFLDSLNYENLPIDEHL-FKN 1263
                  ****777797788************************************************99......89**************77766665.888 PP

                  HH.....HTTXXXXBXXXXX.XXXBXXHHHHHHHHHHHH.......HH..XSSXSHHHHHHH....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      Nup192 1237 fd.kvnlellLdkceekdadsgnklydisklekllrlek.......sslkqlvqseskagqekeimaEiekileyavklnrqkelreaqlkvLhsWv 1325
                  f+    l+l+L+k ++++++ gn +y ++ l++l+   +       +++   +++e  ++q++ + +Ei  ++ ++++++++k+++e+ql +LhsWv
  CCD23883.1 1264 FKyLNALPLNLEKFTLNEKCAGN-IYSLNDLNSLMSVAQkvvkpplHATA-CTTDEVGEAQKETLVKEIVMMKFCVSSYLSNKKFQELQLLILHSWV 1358
                  888559**************888.**********9999999999765544.999******************************************* PP

                  HHHHHHHHHSXXXSHHHHHHHHHHHHHHHHHHHHHTTTXHHHHHHHHHHHHHHHTTXXXXXXXX...XXXXHHHHHHHCCTTHHHHHHHHHHHHHT- CS
      Nup192 1326 qLvqvlvsdgelsseersnfilevlqkilpkindyveediqfaeelaslvsvllfdlyeklrqsikkseeqketgnlsserLlqlfktciegIlsse 1422
                  qLvqv+v+dg+ls+ +rsnfilev+++i+pkindyve +  f+eel sl+ v+l dly+k+r+    ++        +++rL+++fk+c++gI+s+ 
  CCD23883.1 1359 QLVQVIVTDGNLSPLSRSNFILEVFETIIPKINDYVEVNTLFSEELTSLA-VFLNDLYQKDRMVV--DNL-----RFVDSRLYNMFKVCLHGINSPL 1447
                  **************************************************.************88..433.....46788***************** PP

                  S-HHHHHHHHHHHHHHHHTTT---HHHHH.......HHHHHHHHHHHTHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH.TT---H.HHHHHHHTT CS
      Nup192 1423 stqkLRsdlYvlllnyLqieasetskanlslkeeslkkeilqiiksygekLieviCnDaitgegvcritalllLdsLvelsssnksnfilellvknn 1519
                  st++LRsd+Yvl++ yL +           +ke++l ke++  i++ +ekL+eviCnDai+ +g+c+it++llLdsL++l++ nk nf+l+ l+k +
  CCD23883.1 1448 STPTLRSDFYVLANSYLVR----------RIKENTLVKEVIMDIRMHNEKLLEVICNDAIYVQGTCKITGILLLDSLIQLGNINKANFVLDNLMKGT 1534
                  *******************..........77889*************************************************************** PP

                  HHHHHHHGGGGHHHHHH---------..----.--.HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTSSSS-SS---............... CS
      Nup192 1520 yLkllvrslkrtdealqeilkpdpes..ldal.ye.tvfesklalLirlAqtrkGAeqLLqnklfsvlkeckflaidPDlgl............... 1597
                  +L+ + ++lk+td +    l++++e+  +d+l ye t+f+++ ++L+r+A+tr GA+ LLq+k+++++ +++fl+idPDlg                
  CCD23883.1 1535 QLQRIAQTLKSTDLL----LTSTAEHitIDDLlYElTAFKTTASFLVRVAETRIGAQSLLQCKILQIIGDLSFLKIDPDLGSelifnespsknsdfi 1627
                  ***************....455555555********************************************************************* PP

                  ....--S-SSHHHHH...HHHHHHHHHHHHHHHHHHHTT-STT...HHHHHHHHHHTTTHHHHHHHHTT....---...HHHHHHHHHHHHHHHHHH CS
      Nup192 1598 kin.sldnpllskalnnteryfellvpvlqLitaillSlGssnksaieqvrklLkahrdlvvgvLKrdalpesklg...keeeeegLkelaklfvll 1690
                  k+n +l n++ + a++n+ ++fe+++p+++L+++illSlGs+nks+i++v+klL ++r+l+vg++K+d+l+e++ +   +++ +e  +el+kl v+l
  CCD23883.1 1628 KVNiNLTNSINGVASSNGVSLFEVITPIFRLLCSILLSLGSTNKSVISNVKKLLMEFRKLLVGIFKKDVLKETQDTvqsTKSASEDWQELVKLAVVL 1724
                  99999*99996666668****************************************************9999999655555555************ PP

                  HHTT CS
      Nup192 1691 atlt 1694
                  +tlt
  CCD23883.1 1725 CTLT 1728
                  **97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1738 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.50
# Mc/sec: 10451.61
//
Query:       CCD23884.1  [L=665]
Description: hypothetical protein NDAI_0C02240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-41  140.5   6.5    1.9e-41  140.5   6.5    2.0  2  Nsp1_C      Nsp1-like C-terminal region
  ------ inclusion threshold ------
       0.21   12.1  10.8      0.043   14.3   2.0    2.7  2  DUF16       Protein of unknown function DUF16


Domain annotation for each model (and alignments):
>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5   6.5   2.1e-45   1.9e-41       2     113 ..     463     572 ..     462     581 .. 0.97
   2 ?   -0.8   0.2      0.15   1.3e+03      18      47 ..     591     620 ..     577     663 .. 0.58

  Alignments for each domain:
  == domain 1  score: 140.5 bits;  conditional E-value: 2.1e-45
      Nsp1_C   2 saktveiapsaaslknktldelinkWtteLeeqekeFeeqakkvneWDrvLvengekIskLysevleaeqeqnkidqeLeyiesqqdeLeslLdnyEke 100
                 ++ktve++p++  l+nktld+l++kWt++L++++++F++++kkvn+WD++Lv++ge++s+Lys++l+aeq+qnkidq+L+yie+qqdeL+ +Ld+yEk+
  CCD23884.1 463 NSKTVEPKPVS--LDNKTLDDLVTKWTNQLTDAATHFDNYSKKVNNWDQMLVKGGEQVSQLYSDTLAAEQNQNKIDQSLQYIERQQDELDVFLDSYEKK 559
                 7899****999..************************************************************************************** PP

      Nsp1_C 101 leellsklesqks 113
                 +++lls++ s++s
  CCD23884.1 560 ADTLLSDILSNSS 572
                 *******999887 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.15
      Nsp1_C  18 ktldelinkWtteLeeqekeFeeqakkvne 47 
                 +tlde +   +++L++  +e +e ++++n+
  CCD23884.1 591 ETLDENLDSLSLNLSSLITEINEVSANFNK 620
                 344444444444444444444443333333 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   2.0   4.8e-06     0.043      22     103 ..     476     557 ..     461     558 .. 0.90
   2 ?    2.0   1.8     0.032   2.9e+02      10      95 ..     581     663 ..     571     665 .] 0.64

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.8e-06
                 HHHHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHHC CS
       DUF16  22 rkqlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRlDsie 103
                  k l++      ++L++  ++ d   +++n+  q   k ge++++l  +  a +++ nk+d++l+ i +  ++++  lDs e
  CCD23884.1 476 NKTLDDLVTKWTNQLTDAATHFDNYSKKVNNWDQMLVKGGEQVSQLYSDTLAAEQNQNKIDQSLQYIERQQDELDVFLDSYE 557
                 57788888888899*****************************************************998888888888765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.032
                 XXX.X.XTTB-BHHHHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHH CS
       DUF16  10 vKkiPvkteYVTrkqlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqki 95 
                 +K+   ++ Y T   l+e  ds   +L  + ++++    ++nk + +  +  ++  +l    +a  ++l+++d+  +l+ + ++++
  CCD23884.1 581 QKR---QQAYRTAETLDENLDSLSLNLSSLITEINEVSANFNKATSINLNNKDENAQLIRLLNAHLDALKSLDNNSNLLEQKIKAL 663
                 455...67788888888888887777777777777777777777665544444444555566666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1682  (0.0938145); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.47
# Mc/sec: 4261.27
//
Query:       CCD23885.1  [L=450]
Description: hypothetical protein NDAI_0C02250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-12   47.1  13.3    7.9e-12   45.3  13.3    2.0  1  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3  13.3   4.4e-16   7.9e-12      44     206 ..     134     347 ..      38     355 .. 0.85

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 4.4e-16
  RabGAP-TBC  44 skelsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevg.................YcqGmndivapll.........lvsldeee....... 109
                 +++l+ I++D++r +  +++f+ +++  q+++iL+ y i   +                   Y qG + ++++++                +       
  CCD23885.1 134 PETLEIIDLDLSRLML-DDIFQRPKVYAQMRQILYNYLIISRNNTkgmnttdfssiqgkvfsYKQGYHELLGLIYlqlyhemdlN------Kgnrnals 225
                 56799***********.********************98766444468899999*********************6655555540......15555566 PP

  RabGAP-TBC 110 ....................aFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlke......egldlelfaikwfltlflrefple 182
                                     + ++fv+L+ ++  +++y+++ + +k++  ++ ++lk   p l+ ++ e      +   + +++i+w   l+lre+p e
  CCD23885.1 226 sldggkenyhgnedvtlmrnCLNIFVKLM-NQVAPTFYNEK-QLIKWDETQFSQILKVCSPTLHALIYEkdqngrKPHSNLIWLIRWTRLLLLRELPRE 322
                 6666666677777779*************.88899999887.69**********************9665898865556678***************** PP

  RabGAP-TBC 183 tvlrlwDlll.egekfvllrvalai 206
                  vl +wD+ll + + + +l  +l+i
  CCD23885.1 323 KVLIIWDHLLtFVYPIDTLMACLII 347
                 *******666366667677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3455.25
//
Query:       CCD23886.1  [L=1407]
Description: hypothetical protein NDAI_0C02260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
        3.3    8.3  14.3       0.45   11.0   1.9    4.6  5  LRR_4           Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.27   4.8e+03      11      35 ..     441     464 ..     440     467 .. 0.81
   2 ?    2.5   0.2     0.012   2.2e+02       4      31 ..     751     784 ..     749     794 .. 0.80
   3 ?   -0.9   0.1      0.14   2.6e+03       3      15 ..     920     932 ..     910     951 .. 0.79
   4 ?   11.0   1.9   2.5e-05      0.45       2      40 ..     955     996 ..     954    1003 .. 0.89
   5 ?   -2.5   0.0      0.45   8.1e+03       6      30 ..    1023    1046 ..    1010    1050 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.27
                 S---E-S-HHH-TT--EEE-.-S-- CS
       LRR_4  11 NqltdiplleklpnLkeLdLsgNnl 35 
                 N +t +p+le+++ Lk+++   N++
  CCD23886.1 441 NTVT-VPGLEGIKPLKHVSFATNTY 464
                 6888.899999*******9988865 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.012
                 -EEE--SS---E-S-.....HH.H-TT--EEE-. CS
       LRR_4   4 evLdLsnNqltdipl.....le.klpnLkeLdLs 31 
                 e+L+L+n+ l d ++     +  k ++L +LdL+
  CCD23886.1 751 EKLSLRNTPLDDEGWkllcyFIsKSKSLISLDLT 784
                 689*********9999765522479999999994 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.14
                 --EEE--SS---E CS
       LRR_4   3 LevLdLsnNqltd 15 
                 L++L+L++++l  
  CCD23886.1 920 LKYLSLNDTCLEV 932
                 7888888888774 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 2.5e-05
                 S--EEE--SS-..........--E-S-HHH-TT--EEE-.-S-----GG CS
       LRR_4   2 nLevLdLsnNq..........ltdiplleklpnLkeLdLsgNnlitdld 40 
                 nL++LdLsnN           ++ +p    + nL  L+L  N    dl+
  CCD23886.1 955 NLKFLDLSNNPkcfpncvdtlIKCLPV---FVNLVRLHLDYN----DLT 996
                 9********97799999999999*999...*********889....764 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 0.45
                  EE--SS.---E-S-HHH-TT--EEE- CS
       LRR_4    6 LdLsnN.qltdiplleklpnLkeLdL 30  
                  LdL+++  lt+   ++   +L +Ld+
  CCD23886.1 1023 LDLASCkALTE--AFRRSSSLLTLDI 1046
                  66666534676..5555677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1562  (0.0871214); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.49
# Mc/sec: 8649.37
//
Query:       CCD23887.1  [L=758]
Description: hypothetical protein NDAI_0C02270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.4e-105  350.4   0.1   1.8e-104  349.0   0.0    1.8  2  Dynamin_M  Dynamin central region
    7.4e-55  185.6   0.1    7.4e-55  185.6   0.1    3.1  4  Dynamin_N  Dynamin family
    1.3e-29  102.2   4.8    3.6e-29  100.8   4.8    1.8  1  GED        Dynamin GTPase effector domain
    4.8e-05   23.4   0.4    0.00058   19.9   0.4    2.6  1  MMR_HSR1   50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.3     6e+03     220     253 ..     122     155 ..     110     162 .. 0.67
   2 !  349.0   0.0  3.9e-108  1.8e-104       1     282 [.     256     540 ..     256     542 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.3
   Dynamin_M 220 kiveklekelkrFpnLreeikevvedllreqeep 253
                 ++++  ++++  F+++++ei++ + +l  +++  
  CCD23887.1 122 EFLHVPNRKFYDFNEIKREIENETARLAGKNKGI 155
                 4444444578888888888888887777666655 PP

  == domain 2  score: 349.0 bits;  conditional E-value: 3.9e-108
   Dynamin_M   1 vvdilenkvipLklGYvgVvnRsqkdInkkksieealkkEkaFFeshpayrkladkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekeleel 99 
                 +++il++k +pLklG+vg+vnRsq+dI+ +ks++eal++E+++F++hp+yr++++++Gt+yLak Ln+iL++hI+++lP++k+k+n +++++e+el  +
  CCD23887.1 256 ALEILSGKMYPLKLGFVGIVNRSQQDIQLNKSVKEALDNEEQYFRRHPIYRTISNRCGTRYLAKLLNRILMNHIKDKLPDIKTKLNALVTQTEQELLGY 354
                 689************************************************************************************************ PP

   Dynamin_M 100 geskpsde.ektklllqlitkfkedfkklieGese.vstkelsggarireiFnetlekslekidpleelsdeeirtairnsrGrelplfvpekaFealv 196
                 g +   ++ +++ l+l+l++kf+++f ++ieG+s+ ++tkel+ggari++i+n++++ksl+++dp+ +l+ ++irtairns+G++ +lfvpe aF+ lv
  CCD23887.1 355 GGGVRGTKeNRSGLILELMNKFSTNFISSIEGNSSnINTKELCGGARIYYIYNNIFGKSLKSLDPTTNLTVQDIRTAIRNSTGPRATLFVPELAFDLLV 453
                 *77666666************************65589************************************************************* PP

   Dynamin_M 197 kkqikkleepalkcvelVyeelekiveklek.elkrFpnLreeikevvedllreqeeptkemienliemelayintnhpdfigalka 282
                 ++q++ l  p+++cv+lVyeel+ki++++ + el+r+p+L++++ +vv +ll+e+ +pt++++e+li++++ayintnhp+f++a++a
  CCD23887.1 454 RPQVDLLLGPSQRCVDLVYEELMKILHSCGSsELARYPRLKSMLIDVVVELLKERVDPTRQYVESLIAIHKAYINTNHPNFLKATDA 540
                 ****************************9999**************************************************99876 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6   0.1   1.7e-58   7.4e-55       1     167 [.      31     246 ..      31     247 .. 0.94
   2 ?   -3.4   0.2       1.9   8.5e+03      50      58 ..     555     563 ..     527     600 .. 0.54
   3 ?   -1.7   0.0      0.57   2.6e+03      11      24 ..     608     621 ..     601     633 .. 0.81
   4 ?    0.5   0.0      0.13   5.7e+02     120     153 ..     687     720 ..     653     726 .. 0.85

  Alignments for each domain:
  == domain 1  score: 185.6 bits;  conditional E-value: 1.7e-58
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE......................................CCT---C..CS...SSEEEE. CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql......................................geeeeas..eravkeelkek. 58 
                 +avvGsqSsGKSS+++ L+g+d+lprg++++Trrpl+lql                                            +  e++  +e++e+ 
  CCD23887.1  31 LAVVGSQSSGKSSIIETLVGRDFLPRGTGIVTRRPLILQLinipegsdhatdgsnstfeskkevnavltetvpdanplV-----EstEKQIFNEWGEFl 124
                 69***********************************************999999999998888888887777665552.....13345678899999* PP

                 ...T-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTTS.........HHHHHHH.STTEEEEEEEETTS-CCC CS
   Dynamin_N  59 ...ekkledfsevreeieketekiagankgiskkvillkilsllvkgltlvDlPGldsvnkrdq.........elvkeyi.kkadiilavtsanhdlsn 144
                    ++k++df+e+++eie+et+++ag+nkgisk +i+lki+s++v +ltlvDlPG+++v+ ++q         +l+  y+ ++++iilav++an+dl n
  CCD23887.1 125 hvpNRKFYDFNEIKREIENETARLAGKNKGISKSPINLKIFSPHVLNLTLVDLPGITKVPIGEQppdiekqikNLILDYVaTPNCIILAVSPANVDLVN 223
                 *************************************************************************************************** PP

                 -CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 145 sealflarevdpkgkrtivvltk 167
                 se+l+la+evdp+gkrti+v+tk
  CCD23887.1 224 SESLKLAKEVDPHGKRTIGVVTK 246
                 **********************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.9
                 ...SSEEEE CS
   Dynamin_N  50 avkeelkek 58 
                 ++k+e + +
  CCD23887.1 555 KEKIEKERF 563
                 222222222 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.57
                 HHHHHHHHHTS--S CS
   Dynamin_N  11 KSSvlnaLlgedil 24 
                 K S+ln + g+d++
  CCD23887.1 608 KDSFLNYIFGKDLN 621
                 779********954 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.13
                 HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHH CS
   Dynamin_N 120 elvkeyikkadiilavtsanhdlsnsealflare 153
                 e+++ +i ka ++++v +++  + n  +++l +e
  CCD23887.1 687 EMIQDQIPKAIMFFLVNYCKETVQNRLVTKLYKE 720
                 8999***999999999999999999999998876 PP

>> GED  Dynamin GTPase effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   4.8   7.9e-33   3.6e-29       1      91 [.     666     756 ..     666     757 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.8 bits;  conditional E-value: 7.9e-33
                 XXXXXTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCCCHHHCCTTSGGGHHHHT---SCHCCCCHHHHHHHHHHHHHCCCCCH CS
         GED   1 reeseveeirslvksYfnivrktiadqiPkaimhllvneakeslqkellakLykkedldeLLkEdeeiaekRkelkkrlealkkAreilse 91 
                 ree+e+e ir+l+ sYf+i+r++i+dqiPkaim++lvn++ke +q++l++kLyk+++l+eLL Ed++ia++R ++++ le++k+A++ +++
  CCD23887.1 666 REELECELIRRLIISYFDIIREMIQDQIPKAIMFFLVNYCKETVQNRLVTKLYKESMLEELLVEDQAIAQERANCERLLETYKNASSLVNN 756
                 6899**********************************************************************************99986 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.4   1.3e-07   0.00058       3     112 ..      32     244 ..      30     246 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.3e-07
                 EEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE..ETTEE.................................................... CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk..lkgke.................................................... 47 
                 a+vG   +GKS++i +l+g+      +  +Tr +   ++       e                                                    
  CCD23887.1  32 AVVGSQSSGKSSIIETLVGRDFLPRGTGIVTRRPLILQLIniP---Egsdhatdgsnstfeskkevnavltetvpdanplvestekqifnewgeflhvp 127
                 89********************9***********777665341...1334667778889999999999******************************* PP

                 ............................................EEEEECGGCS.....S.HHHHHHHHHHHHHHHHCT.SEEEEEEETTTTCSHHHHH CS
    MMR_HSR1  48 ............................................ielvDtpGli.....e.gaseekglgkaflaleea.dlillvvdaseeklkplde 95 
                                                             ++lvD+pG+      e   + ek++++ +l+   + + i+l v+   ++++ +++
  CCD23887.1 128 nrkfydfneikreienetarlagknkgiskspinlkifsphvlnLTLVDLPGITkvpigEqPPDIEKQIKNLILDYVATpNCIILAVS-P-ANVDLVNS 224
                 ****************************************************733322212222333444444444443356666665.2.33555555 PP

                 HHHHHHHH...TTSEEEEEE CS
    MMR_HSR1  96 eleellee...akkplilvl 112
                 e  +l +e   ++k++i v+
  CCD23887.1 225 ESLKLAKEvdpHGKRTIGVV 244
                 55555544444555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1134  (0.0632495); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.48
# Mc/sec: 4771.63
//
Query:       CCD23888.1  [L=862]
Description: hypothetical protein NDAI_0C02280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-17   63.3   8.7    2.4e-06   27.8   0.3    6.3  5  Fasciclin  Fasciclin domain
  ------ inclusion threshold ------
       0.07   13.1   0.2       0.22   11.6   0.2    1.8  2  DUF3969    Protein of unknown function (DUF3969)


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.3   2.6e-10   2.4e-06       2     120 ..      45     158 ..      44     166 .. 0.65
   2 !    6.2   0.3    0.0013        12      19     120 ..     200     314 ..     174     318 .. 0.73
   3 !    5.9   0.1    0.0016        14      50     122 ..     376     466 ..     332     471 .. 0.60
   4 !   12.0   0.0     2e-05      0.18       6     120 ..     489     609 ..     484     614 .. 0.63
   5 !   10.3   0.0     7e-05      0.62       6     108 ..     624     735 ..     619     756 .. 0.62

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.6e-10
                 GGHHHHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHTCHHHHHHHHHTTEEES.SS-HHHHHHHHEEEECCTTSSEEEEEEE...GGT CS
   Fasciclin   2 dlstfvsllekaglaeeLnkkdgglTvFaPtneAfaklppellakllndkkklkeiLkyHvvpe.tvsssalkkasetlatllegaklrvnie...kgn 96 
                 ++stf +l+++ g++  L ++ +++T+FaP n+Af  + +++ + l +++ +l++ L++ ++ + +v ++++          ++  k+ + i+   k++
  CCD23888.1  45 QFSTFLRLVQRKGYVPYL-NELQNFTLFAPVNSAF--IVNDEGSILGENQFDLENYLLHNLTLNlSVRKESMTII-------NQYVKFPFIIDsinKTH 133
                 79****************.6669************..65566666656666776666544444334444333333.......23333333333335667 PP

                 TEEEETTEEEEEEEEE..EESSEEEE CS
   Fasciclin  97 gtvtvngkarvvrsdi..eatngvih 120
                  t tvn+  r++++d   + +n +i 
  CCD23888.1 134 RTPTVNN-IRITEPDLkpNFQNAYIQ 158
                 7888888.888888873344555555 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0013
                 CTCSSSSEEEEEE-HHHHCCC...............HHHHHHHHHT.CHHHHHHHHHTTEEESSS-HHHHHHHHEEEECCTTSSEEEEEEEGGTTEEEE CS
   Fasciclin  19 LnkkdgglTvFaPtneAfakl...............ppellaklln.dkkklkeiLkyHvvpetvsssalkkasetlatllegaklrvniekgngtvtv 101
                 L++  ++ T++ P+n+ ++k+               +++l +k+ +  ++++ ++L+  ++++    s+l+++   l+t+l++ +l +++ +++ ++tv
  CCD23888.1 200 LEDIVQNNTFLLPSNSNIRKFynqieanylidnfsqKKGLDRKIQDkWDRDALNFLQSIILKDVTGGSNLHNT---LRTNLNNVTLVLENCDHSRKITV 295
                 3333348899999999995555555555566666666666777766766777789999999998888889886...99977777777777778889*** PP

                 TT.EEEEEEEEEEESSEEEE CS
   Fasciclin 102 ng.karvvrsdieatngvih 120
                 n+ +++++ ++    ng+ h
  CCD23888.1 296 NHsSPSIL-TNEIFVNGIAH 314
                 **666666.88889999988 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0016
                 CHHHHHHHHHTTEEESSS-HHHHHHH..............HEE....EECCTTSS..EEEEEEEGGTTEEEETTEEEEEEEE.EEESSEEEEEE CS
   Fasciclin  50 dkkklkeiLkyHvvpetvsssalkka..............set....latllega..klrvniekgngtvtvngkarvvrsd.ieatngvihvi 122
                 d    k+ ++yH+v+e++  ++ +                + +     +  l g+  kl+++++  n+ +++n+k ++++++ ++    +i++i
  CCD23888.1 376 DIGFTKSTILYHFVKEQLWLEENEALatsafssnanryliD-SsfcsSNKRLGGKcqKLKISKT--NEGYFINNKIKILNTKpYKIGSSLIYTI 466
                 4456788999******9977766666444665555555551.0443222235555345555555..8899999988888554135555566665 PP

  == domain 4  score: 12.0 bits;  conditional E-value: 2e-05
                 HHHHHHTTTCCCCCTCSSSSEEEEEE-HHHHCCCHHHHHHHHHTCHHHHHHHHHTTEEES.SS-HHHHHHHHEEEECCTTSSEEEEEEE...GGTT... CS
   Fasciclin   6 fvsllekaglaeeLnkkdgglTvFaPtneAfaklppellakllndkkklkeiLkyHvvpe.tvsssalkkasetlatllegaklrvnie...kgng... 97 
                  ++ll++ +l +    + +g+T+F P  +A+ +      + l+++  ++   +k+ ++++ +++ ++l+ +  + ++ l g+++ +++e      +   
  CCD23888.1 489 SIELLKQLDLLTLA-PNYKGYTIFLPCFDAWTEQ-DLIFNYLESNLTAANISMKNLIINGlYYTVNSLHGK--QTTN-LLGNEVLISTEedsY--Dsdi 580
                 55666666666444.5558************444.33555555566777777999*****55566666654..4444.888888888885331..2334 PP

                 ..EEEETT...EEEEE.EEEEEESSEEEE CS
   Fasciclin  98 ..tvtvng...karvv.rsdieatngvih 120
                   + ++ +     +v  +sdi  ++gvih
  CCD23888.1 581 atEFMLSTmkdPISVEkNSDIIFDQGVIH 609
                 44444444544344444678888888888 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 7e-05
                 HHHHHHTTTCCCCC......TCSSS.........SEEEEEE-HHHHCCCHHHHHHHHHTCHHHHHHHHHTTEEESSS-HHHHHHHHEEEECCTTSSEEE CS
   Fasciclin   6 fvsllekaglaeeL......nkkdg.........glTvFaPtneAfaklppellakllndkkklkeiLkyHvvpetvsssalkkasetlatllegaklr 89 
                 + +l+++ag+ e L      +   +         ++ +++Pt++ +  + ++ +     +  +lke+Lk H+v +  + + l  + ++++t l+g  l+
  CCD23888.1 624 LKDLIKTAGVPEFLeflenfQ---EfssifayneSYSLLVPTQASL--IREGINL----NFTSLKEFLKLHIVTGNSTVNLLGCK-GKIST-LSGYGLS 711
                 555666666655552222220...12233333339999*****999..4334443....5579************9999999988.99999.9999888 PP

                 EEEE.GGTTEEEETT....EEEEE CS
   Fasciclin  90 vnie.kgngtvtvng....karvv 108
                  n+  k+n  + v++    ++r++
  CCD23888.1 712 CNEVsKNNLFLHVDSgsnkEVRIL 735
                 888833333333433554455555 PP

>> DUF3969  Protein of unknown function (DUF3969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   2.4e-05      0.22      31      83 ..     330     382 ..     312     398 .. 0.85
   2 ?   -3.8   0.0       1.5   1.3e+04      24      53 ..     591     620 ..     588     623 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
     DUF3969  31 aesllFslemlelieelelsdelveiihkgmeLEDvesliPe.eLedsIdeiel 83 
                 ae++l  l+  + +ee+    +l ++i++ ++LE +  ++Pe  L+d I  +++
  CCD23888.1 330 AEKYLHGLNNSKFVEEIY-FRKLQHLIQDESSLENITIFVPEpSLNDDIGFTKS 382
                 788999999999997765.578*************************9977665 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.5
     DUF3969  24 kvisleeaesllFslemlelieelelsdel 53 
                 + is+e  ++++F   +++ +++++  ++l
  CCD23888.1 591 DPISVEKNSDIIFDQGVIHPLRDINFPKDL 620
                 568999999999999999999988877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (862 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       502  (0.0279993); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 5874.63
//
Query:       CCD23889.1  [L=434]
Description: hypothetical protein NDAI_0C02290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-24   86.6   0.3    1.1e-24   86.6   0.3    2.3  2  PX              PX domain
      5e-05   21.3   5.2      5e-05   21.3   5.2    1.7  2  Nup88           Nuclear pore component
    7.5e-05   22.4  19.0      0.027   14.0  19.0    2.6  1  Vps5            Vps5 C terminal like
  ------ inclusion threshold ------
      0.017   15.3   6.1      0.088   13.0   1.3    2.7  2  SbsC_C          SbsC C-terminal domain
      0.063   13.3   1.3       0.12   12.4   0.3    1.9  2  DUF1804         Protein of unknown function (DUF1804)
       0.15   12.4   8.5        1.4    9.4   0.5    3.7  3  FlaC_arch       Flagella accessory protein C (FlaC)
        0.2   12.2   8.5        2.1    8.8   4.2    3.5  2  NPV_P10         Nucleopolyhedrovirus P10 protein
          1    9.4   7.7       0.67   10.0   1.6    2.7  3  Baculo_PEP_C    Baculovirus polyhedron envelope protein, PEP,
        1.2    9.5   5.3       0.73   10.1   1.7    2.4  2  DUF948          Bacterial protein of unknown function (DUF948
        1.2    9.6   6.6       0.38   11.2   0.9    2.6  2  T3SSipB         Type III cell invasion protein SipB
        1.8    8.9  10.7       0.19   12.1   4.5    2.4  1  Gp-FAR-1        Nematode fatty acid retinoid binding protein 
        2.2    8.3  13.5       0.13   12.3   3.8    2.4  2  Rootletin       Ciliary rootlet component, centrosome cohesio
        2.2    8.8  16.4       0.27   11.7   3.0    2.5  2  APG6_N          Apg6 coiled-coil region
        3.4    7.0  21.3        7.2    5.9  19.1    2.5  2  DUF4618         Domain of unknown function (DUF4618)
        3.9    6.6  13.1       0.06   12.6   2.7    2.6  3  TMPIT           TMPIT-like protein
        4.1    7.4  18.3       0.25   11.4   8.5    2.7  2  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
        5.3    7.4   6.9         13    6.2   0.3    3.6  3  DUF4164         Domain of unknown function (DUF4164)
        6.1    7.6  11.6       0.25   12.0   1.5    3.2  2  YabA            Initiation control protein YabA
        9.8    6.7   7.8       0.44   11.0   0.4    2.7  3  CRR7            Protein CHLORORESPIRATORY REDUCTION 7


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.3   1.1e-27   1.1e-24       3     112 ..      36     163 ..      34     164 .. 0.96
   2 ?   -1.7   0.1         3   2.8e+03      85     111 ..     292     323 ..     290     325 .. 0.63

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 1.1e-27
                 EEEEEEEEEEEE...TTSSEEEEEEEEEETTS.............SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSS...CTTSHHHHHH CS
          PX   3 laqvsvlerets...gskkhsyylyevelktg.............akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsv...rkkdeefiek 82 
                 + q+ v++++++    ++++ y++y++++kt+                  v+RrYsd++ Lh+ L +  p+++iPplP+k++f+ +   ++++++f++k
  CCD23889.1  36 TTQIIVSDPQKHandPNSSTAYVTYQISTKTNnpsyhknhgsattTDIIVVHRRYSDLVLLHDILSNDNPTRIIPPLPDKKVFQ-YiagDRFSQRFTQK 133
                 7899*********999**************************9999999**********************************9.78************ PP

                 HHHHHHHHHHHHHTSCHHHHSHHHHHHHHS CS
          PX  83 rrkgLeeyLqrllnhpelrnsevlteFLev 112
                 r ++L+++L+r+++hp l++ +++ +FL +
  CCD23889.1 134 RCHSLQNFLKRVSTHPILSKASIFEQFLVS 163
                 ****************************76 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 3
                 HHHHHHHHHHHTSCHHHH.....SHHHHHHHH CS
          PX  85 kgLeeyLqrllnhpelrn.....sevlteFLe 111
                 k+Le+y+ +l +   l       +e l eFL+
  CCD23889.1 292 KDLEHYIDSLHQSLKLKDqkqidYEQLSEFLT 323
                 56778877776665554444445777777776 PP

>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   5.2   5.3e-08     5e-05     503     685 ..     137     314 ..      52     334 .. 0.84
   2 ?   -1.3   0.6      0.37   3.5e+02     626     667 ..     354     395 ..     345     426 .. 0.58

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 5.3e-08
       Nup88 503 hIkslLqrsvsnpilsadkksskspkEclqllsratqvlReeylkkqelvreeiekrvkllkkqkeqqleelqsleeerkslseraeklAekyeeikdk 601
                  +++ L+r ++ pil     s+ s  E + l+s+  +  R+    + ++ +ee+   +    k  ++q ee  +++e+ ++l  +  kl +++  +  k
  CCD23889.1 137 SLQNFLKRVSTHPIL-----SKASIFEQF-LVSNEWEAYRRSLSGNLQTNKEEVSDTIMNAFKTVHNQSEEFIEIKEKSDKLDHTISKLSKNFHKVVRK 229
                 57899**********.....445666766.89999***********************9999999********************************** PP

       Nup88 602 Qeklvrrvkkvlkrlnsklpvlseaeremkkelekikeklkslknalkqvkkkldkqrkqiaks.keeekksslelsekqkktik 685
                  ++++   +k+ ++l++   v+s+ +  ++++l+ ++e +k++   l++++k ld+  +   k+ ++  ++ + +l+ k +k+i 
  CCD23889.1 230 NDSIADDYSKLSQSLQDLNEVVSNEDEMLANKLRIFNEGIKQISYGLSDLNKYLDYEYTVDLKDlEHYIDSLHQSLKLKDQKQID 314
                 ******************99999999999**************************987665555244445555666766666664 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.37
       Nup88 626 aeremkkelekikeklkslknalkqvkkkldkqrkqiakske 667
                 +e + ++++ k+++k+ +l  +l+++kk  d  ++++ k+ +
  CCD23889.1 354 QEASRREKIVKLETKITTLTGELDNAKKVADGFEQETLKEVD 395
                 555556666666666666666666666666655555444432 PP

>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0  19.0   2.9e-05     0.027       8     232 ..     184     429 ..     177     432 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.9e-05
        Vps5   8 ltssisksstkfeEqDewFedkkqeldslesqLkkLykaiellvsqrkelasataelakslesLasl..elskslsralsqlaeveerikellerqaeq 104
                 + ++i ++ + +++q e F++ k++ d+l++++ kL+k    +v++   +a    +l++sl+ L ++  ++ + l+++l  + e  ++i+  l++ ++ 
  CCD23889.1 184 VSDTIMNAFKTVHNQSEEFIEIKEKSDKLDHTISKLSKNFHKVVRKNDSIADDYSKLSQSLQDLNEVvsNEDEMLANKLRIFNEGIKQISYGLSDLNKY 282
                 45566666777888888899********************************************9973366699************************* PP

        Vps5 105 dvltLgetideylrligsvksvfe...qRvklwqkwqsaeqelskkkeql...........eKlek.....aaksqqdklqqlkkeveelerkvqeaek 184
                   ++  + +++   +i+s+ + ++   q +  ++++ ++  +  k k++l           +Kle+     ++ s+++k+ +l+  +++l+  +++a+k
  CCD23889.1 283 LDYEYTVDLKDLEHYIDSLHQSLKlkdQKQIDYEQLSEFLTKSIKEKNNLisgtgggnyftTKLEAlagvnQEASRREKIVKLETKITTLTGELDNAKK 381
                 ********************99863225555577777666666666666423323322222465532222244677999******************** PP

        Vps5 185 eFeeisetikkElerFetervedfknvvekyLesaiesqkevielWet 232
                   +   ++  kE++ Fe+ + +++k+++     + i+  ++++e W +
  CCD23889.1 382 VADGFEQETLKEVDLFEKVKSKELKESLGSLADHHIQFYEKMVETWTK 429
                 999999****************************************87 PP

>> SbsC_C  SbsC C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.3   9.3e-05     0.088      37     106 ..     176     246 ..     162     253 .. 0.88
   2 ?    4.0   0.2      0.06        57      44      78 ..     278     312 ..     269     331 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.3e-05
      SbsC_C  37 lkgkkkeklearLkaavqtqikraaayidAvksGkklekkkselkkal.kankledetekaYhelskeikk 106
                   +++ke++ + + +a +t  ++   +i+  ++++kl+   s+l+k++ k+ + +d   + Y++ls+ ++ 
  CCD23889.1 176 NLQTNKEEVSDTIMNAFKTVHNQSEEFIEIKEKSDKLDHTISKLSKNFhKVVRKNDSIADDYSKLSQSLQD 246
                 45899*******************************************77788999**********99875 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.06
      SbsC_C  44 klearLkaavqtqikraaayidAvksGkklekkks 78 
                 +l++ L++++++ +k   +yid + ++ kl+++k+
  CCD23889.1 278 DLNKYLDYEYTVDLKDLEHYIDSLHQSLKLKDQKQ 312
                 578889999999999999************99764 PP

>> DUF1804  Protein of unknown function (DUF1804)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   0.00012      0.12      48     146 ..     164     261 ..     162     278 .. 0.69
   2 ?   -1.6   0.0       2.4   2.3e+03      80     119 ..     388     431 ..     384     434 .] 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
     DUF1804  48 dDWDklRaakr.laeggieevakqlledfvvqvqet..leelrentelsaedkv.eiLasLsdsfsktvaaakrldPelsklavalevlellaefvrek 142
                 ++W + R + +   +++ eev+ ++++ f + +++   + e++e++     dk+ +++++Ls  f+k+v+ +  ++ + skl+  l+ l++ ++   e 
  CCD23889.1 164 NEWEAYRRSLSgNLQTNKEEVSDTIMNAFKTVHNQSeeFIEIKEKS-----DKLdHTISKLSKNFHKVVRKNDSIADDYSKLSQSLQDLNEVVSNEDEM 257
                 56777776654145789999999****9999998761144555555.....555168*****************9999999986666665555544444 PP

     DUF1804 143 fpeh 146
                   + 
  CCD23889.1 258 LANK 261
                 4444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.4
     DUF1804  80 qetleelrentelsaedkveiLasLsds....fsktvaaakrld 119
                 qetl+e+   ++++ ++  e L sL+d     ++k+v+   ++d
  CCD23889.1 388 QETLKEVDLFEKVKSKELKESLGSLADHhiqfYEKMVETWTKVD 431
                 67777777777888888888888888863333566666655554 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2      0.11     1e+02      16      40 ..     195     219 ..     171     227 .. 0.63
   2 ?    9.4   0.5    0.0014       1.4       3      49 ..     210     253 ..     204     255 .. 0.86
   3 ?    5.6   0.5     0.022        21       7      47 ..     360     400 ..     359     404 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.11
   FlaC_arch  16 letvkkeneelsksveelkenVkdl 40 
                 + +  +e+ e++++ ++l+ ++ +l
  CCD23889.1 195 VHNQSEEFIEIKEKSDKLDHTISKL 219
                 4444445555566666666555544 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0014
   FlaC_arch   3 delEnklsklsteletvkkeneelsksveelkenVkdllsLYEvVsn 49 
                 d+l+  +skls ++  v ++n+++ ++  +l ++ +dl    EvVsn
  CCD23889.1 210 DKLDHTISKLSKNFHKVVRKNDSIADDYSKLSQSLQDL---NEVVSN 253
                 889999**************************999986...455655 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.022
   FlaC_arch   7 nklsklsteletvkkeneelsksveelkenVkdllsLYEvV 47 
                 +k+ kl+t+++t+  e+++ +k  +  +++  + ++L+E V
  CCD23889.1 360 EKIVKLETKITTLTGELDNAKKVADGFEQETLKEVDLFEKV 400
                 57889999999999999999999999998887778888876 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.2    0.0023       2.1      15      66 ..     204     259 ..     199     324 .. 0.88
   2 ?    3.1   0.1      0.14   1.3e+02      11      45 ..     360     387 ..     356     413 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0023
     NPV_P10  15 avddkVdalqqqvddvqenlpdv....telnekLdaqsaqLaeletkvenIqdiLn 66 
                 ++++k d l++ + ++++n+ +v    + + +   ++s++L++l++ v+n +++L 
  CCD23889.1 204 EIKEKSDKLDHTISKLSKNFHKVvrknDSIADDYSKLSQSLQDLNEVVSNEDEMLA 259
                 566777788888888888887773333467788889***************99997 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.14
     NPV_P10  11 adikavddkVdalqqqvddvqenlpdvtelnekLd 45 
                 + i ++++k++ l  +       l + +++ + ++
  CCD23889.1 360 EKIVKLETKITTLTGE-------LDNAKKVADGFE 387
                 4455555555555555.......555555544444 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.6   0.00071      0.67      19      97 ..     189     265 ..     172     285 .. 0.69
   2 ?    1.5   0.8       0.3   2.8e+02      74     103 ..     347     378 ..     258     385 .. 0.65
   3 ?    1.9   0.2      0.23   2.2e+02      21     104 ..     345     379 ..     326     415 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00071
  Baculo_PEP_C  19 tnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnL 97 
                    n+ +++ +q+ +   ++++  d+++ ++++ls+++++++   ++ +++  ++L+++l+ l++ ++ne + l ++l   
    CCD23889.1 189 MNAFKTVHNQSEEF-IEIKEKSDKLDHTISKLSKNFHKVVR-KNDSIADDYSKLSQSLQDLNEVVSNEDEMLANKLRIF 265
                   45566666666666.68888899999999999999999666.4557788888888888888888877766666555544 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.3
  Baculo_PEP_C  74 dalnalq..dtlrneLtnlnsiltnLlssvtN 103
                   +al+ ++   + r+++  l++++t+L+ ++ N
    CCD23889.1 347 EALAGVNqeASRREKIVKLETKITTLTGELDN 378
                   23344443333455666666666666666555 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.23
  Baculo_PEP_C  21 vLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq..dtlrneLtnlnsiltnLlssvtNi 104
                    L+a+                                                   + ++   + r+++  l++++t+L+ ++ N 
    CCD23889.1 345 KLEAL---------------------------------------------------AGVNqeASRREKIVKLETKITTLTGELDNA 379
                   34444...................................................222222222334444444444444444333 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.7   0.00077      0.73      24      88 ..     184     248 ..     175     249 .. 0.94
   2 ?   -0.6   0.1       1.7   1.6e+03      44      68 ..     371     391 ..     341     413 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00077
      DUF948  24 lkktldeaaatieelekqvdpilkevedllakvnelledvneklekvdplteavadlgesvseln 88 
                 +++t+ +a +t+++  ++  +i +++++l +++ +l ++ ++ + k d++ +   +l++s+++ln
  CCD23889.1 184 VSDTIMNAFKTVHNQSEEFIEIKEKSDKLDHTISKLSKNFHKVVRKNDSIADDYSKLSQSLQDLN 248
                 6789999999*****************************************************99 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.7
      DUF948  44 pilkevedllakvnelledvnekle 68 
                      +++ l+++++++++ ++++ 
  CCD23889.1 371 T----LTGELDNAKKVADGFEQETL 391
                 2....33335566666666665443 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.9    0.0004      0.38      25     108 ..     164     245 ..     150     262 .. 0.81
   2 ?   -0.1   0.1       1.2   1.1e+03      33      63 ..     354     384 ..     341     414 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0004
                 HHHHHHHHH.HHHTTTTT----STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CHHHHHH CS
     T3SSipB  25 nrlaawkam.skaqqeaasklSdelqtalseakgatddleaaiekadqaksaadaatkkvdeaqkrlkeLaPdePekakleaaeq 108
                 n  +a++   s   q++++++Sd + +a++  ++  +++ +  ek d+++  + ++ k   ++ ++ +++     ++ kl +  q
  CCD23889.1 164 NEWEAYRRSlSGNLQTNKEEVSDTIMNAFKTVHNQSEEFIEIKEKSDKLDHTISKLSKNFHKVVRKNDSI---ADDYSKLSQSLQ 245
                 566677654044569999**********************************************999999...344666665555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
                 HHHHTTTTT----STHHHHHHHHHHHHHHHH CS
     T3SSipB  33 mskaqqeaasklSdelqtalseakgatddle 63 
                 +  +++e+  kl  ++ t+++e ++a++ ++
  CCD23889.1 354 QEASRREKIVKLETKITTLTGELDNAKKVAD 384
                 5566677777777777777766666655433 PP

>> Gp-FAR-1  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   4.5    0.0002      0.19      20     109 ..     178     267 ..     156     281 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0002
    Gp-FAR-1  20 deekaqlkevvkn.ykgyknedellaalKkkspaLyekaeklqaklkekvdkLspeakeFvkkliakgrkleaqvlagekpdlselkkvak 109
                 +++k+++ + ++n +k+  n  e   ++K+ks++L  +++kl +++++ v k +  a ++  kl++  + l++ v +++++  ++l+ + +
  CCD23889.1 178 QTNKEEVSDTIMNaFKTVHNQSEEFIEIKEKSDKLDHTISKLSKNFHKVVRKNDSIADDYS-KLSQSLQDLNEVVSNEDEMLANKLRIFNE 267
                 578999999999999999999999999*******************999998777777774.56888888888887777777777766655 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.8   0.00014      0.13      69     144 ..     187     270 ..     129     281 .. 0.65
   2 ?    1.0   2.2      0.41   3.8e+02      58     135 ..     354     408 ..     285     432 .. 0.47

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
   Rootletin  69 l........eealakLeeErqrseklaqvnslLreqleearqaneaLtedlqkltkdwerlreeleqkekewreeeeafneyls 144
                 +         +  ++  e +++s+kl ++ s L ++  +  ++n+++ +d  kl++ ++ l+e + ++++ + ++ + fne ++
  CCD23889.1 187 TimnafktvHNQSEEFIEIKEKSDKLDHTISKLSKNFHKVVRKNDSIADDYSKLSQSLQDLNEVVSNEDEMLANKLRIFNEGIK 270
                 123333333444445556689**********************************************99999999998887665 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.41
   Rootletin  58 areleeeesadleealakLeeErqrseklaqvnslLreqleearqaneaLtedlqkltkdwerlreeleqkekewree 135
                 +++ ++e++ +le+ ++                  L  +l++a+++ + ++++  k  + +e      + k+ke++e 
  CCD23889.1 354 QEASRREKIVKLETKITT-----------------LTGELDNAKKVADGFEQETLKEVDLFE------KVKSKELKES 408
                 233334444444444444.................444555555544444444444222222......2223333333 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.0   0.00029      0.27      21     117 ..     131     249 ..     127     264 .. 0.80
   2 ?    2.3   5.6      0.24   2.3e+02      11      98 ..     298     404 ..     284     425 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00029
      APG6_N  21 aekerdaYeeflkklkkekkeeek.......................qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealee 96 
                 ++k + ++++flk++ ++ +  +k                        +++ ee  + + +  k+ ++  ee  e++++ ++l+  +++l++   ++ +
  CCD23889.1 131 TQKRCHSLQNFLKRVSTH-PILSKasifeqflvsneweayrrslsgnLQTNKEEVSDTIMNAFKTVHNQSEEFIEIKEKSDKLDHTISKLSKNFHKVVR 228
                 789999999999999998.55444699999999999999999999996777777777788888888888888888888888888888888888888888 PP

      APG6_N  97 eeerfwreynelqlellelee 117
                 +++    +y++l+  l++l+e
  CCD23889.1 229 KNDSIADDYSKLSQSLQDLNE 249
                 888888888888888877765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.24
      APG6_N  11 leeldkqleqaekerdaYeeflkklkkekkeeek...................qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleee 90 
                 ++ l + l+  +++  +Ye+  + l+k+ ke+++                     +++++ +e++ kle +  +l  eL++++k  +  e+e  +    
  CCD23889.1 298 IDSLHQSLKLKDQKQIDYEQLSEFLTKSIKEKNNlisgtgggnyfttklealaGVNQEASRREKIVKLETKITTLTGELDNAKKVADGFEQETLKEVDL 396
                 677778888888888888888888888877777789999999999998888875555567777788888888888888888888888887776665555 PP

      APG6_N  91 lealeeee 98 
                  e+++ +e
  CCD23889.1 397 FEKVKSKE 404
                 55555444 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  19.1    0.0077       7.2      13     153 ..     172     328 ..     163     401 .. 0.70
   2 ?    0.3   0.5       0.4   3.7e+02     127     181 ..     367     424 ..     354     433 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0077
     DUF4618  13 kheaeLtklnkeLvkeIqdtedstakkvrklL...qqyeklktvisileksskkqle..........qakaeLqeweekeekklekLeqqleqlnakvq 98 
                 + + +L+++ +e  ++I +  ++ +++  +++   ++ +kl + is+l+k+ +k +           ++ + Lq+++e ++++ e L+++l+  n+ ++
  CCD23889.1 172 SLSGNLQTNKEEVSDTIMNAFKTVHNQSEEFIeikEKSDKLDHTISKLSKNFHKVVRkndsiaddysKLSQSLQDLNEVVSNEDEMLANKLRIFNEGIK 270
                 5677899999999999999999999999888733358888999999999998886651111111111567899************************** PP

     DUF4618  99 klqeelnvLstYkDkeYpvkavqIanlvrqlqq...lkdsqqdeldeleelikevlek 153
                 + +  l+ L+ Y D eY v    +++ + +l+q   lkd++q + ++l+e +++ +++
  CCD23889.1 271 QISYGLSDLNKYLDYEYTVDLKDLEHYIDSLHQslkLKDQKQIDYEQLSEFLTKSIKE 328
                 *****************98766666555555432227888888888888776654443 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.4
     DUF4618 127 rqlqqlk...dsqqdeldeleelikevleklskkiqkkkekllkslaektlkatqeaL 181
                 +++  l    d+ ++  d +e+   ++   ++k   k+ ++ l sla + ++ +++++
  CCD23889.1 367 TKITTLTgelDNAKKVADGFEQETLKEVDLFEKVKSKELKESLGSLADHHIQFYEKMV 424
                 3333332111344444555555556666666666666666666666666666666555 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.7   6.4e-05      0.06       3      89 ..     194     283 ..     192     292 .. 0.86
   2 ?   -0.5   0.2       0.6   5.6e+02      38      82 ..     290     333 ..     270     349 .. 0.64
   3 ?   -0.1   0.9      0.46   4.3e+02      32      86 ..     355     409 ..     323     431 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-05
       TMPIT   3 eweelekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveel...keelkerkkvlkevesll 89 
                  +++ ++ef e++e+ +++ +++ +lsk  +k++++ ++   ++++l++sl++l++ v++e+e  +++l   +e +k+++  l++++++l
  CCD23889.1 194 TVHNQSEEFIEIKEKSDKLDHTISKLSKNFHKVVRKNDSIADDYSKLSQSLQDLNEVVSNEDEMLANKLrifNEGIKQISYGLSDLNKYL 283
                 5678899**************************************************999999888887333577777777777887777 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.6
       TMPIT  38 eikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvl 82 
                 ++k  ++ + +l++slk  +++ + ++e+  e l++++ke+++ +
  CCD23889.1 290 DLKDLEHYIDSLHQSLKLKDQK-QIDYEQLSEFLTKSIKEKNNLI 333
                 4444555555555555544333.4556666666677777766655 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.46
       TMPIT  32 qskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkeve 86 
                 + + +++i k + +++ l+ +l++ kk ++  e+e+++e++   k ++k lke  
  CCD23889.1 355 EASRREKIVKLETKITTLTGELDNAKKVADGFEQETLKEVDLFEKVKSKELKESL 409
                 2333445666677777777777777777776666666666554444444455444 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   8.5   0.00026      0.25       6     126 ..     196     321 ..     191     332 .. 0.86
   2 ?    2.0   0.9       0.2   1.9e+02      51      70 ..     359     378 ..     344     422 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00026
  CENP-F_leu_zip   6 lhvlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevet....lkeeieelaeelreleldLvalrsekeeLekelqkk.qer 95 
                     +++ e++ e+++k+d+L   + +L ++   + ++++++  +  +  + ++     + +e e+la++lr ++  +++++    +L+k l  +    
      CCD23889.1 196 HNQSEEFIEIKEKSDKLDHTISKLSKNFHKVVRKNDSIADDYSKLSQSLQDlnevVSNEDEMLANKLRIFNEGIKQISYGLSDLNKYLDYEyTVD 290
                     67899999******************************999988888887722234556789**************************9662679 PP

  CENP-F_leu_zip  96 vseLeslnsslenlleekEqekvqmkeeska 126
                      ++Le    sl++ l+ k q+++  ++ s+ 
      CCD23889.1 291 LKDLEHYIDSLHQSLKLKDQKQIDYEQLSEF 321
                     *********************9988877664 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.2
  CENP-F_leu_zip  51 kaevetlkeeieelaeelre 70 
                     ++++ +l+++i +l+ el +
      CCD23889.1 359 REKIVKLETKITTLTGELDN 378
                     34455555555555555543 PP

>> DUF4164  Domain of unknown function (DUF4164)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.3     0.013        13       4      46 ..     179     221 ..     176     249 .. 0.90
   2 ?    2.1   0.7      0.25   2.4e+02      10      49 ..     291     330 ..     284     375 .. 0.65
   3 ?   -0.7   0.1       1.9   1.8e+03      10      26 ..     362     378 ..     353     409 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.013
     DUF4164   4 keleaaltrLeaaldsLEkavdrrleaerkrdeleaeiealge 46 
                 ++ e++ + +++a+++  + +++ +e ++k d+l+ +i++l +
  CCD23889.1 179 TNKEEVSDTIMNAFKTVHNQSEEFIEIKEKSDKLDHTISKLSK 221
                 67789999*******************************9976 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.25
     DUF4164  10 ltrLeaaldsLEkavdrrleaerkrdeleaeiealgedrs 49 
                 l++Le  +dsL ++++ + +++ + ++l + +++  ++++
  CCD23889.1 291 LKDLEHYIDSLHQSLKLKDQKQIDYEQLSEFLTKSIKEKN 330
                 6788999999999998888888888887777743333333 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.9
     DUF4164  10 ltrLeaaldsLEkavdr 26 
                   +Le+++++L++ +d+
  CCD23889.1 362 IVKLETKITTLTGELDN 378
                 34556666666655553 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.5   0.00026      0.25       8      80 ..     200     268 ..     194     281 .. 0.81
   2 ?   -1.7   3.7       4.9   4.6e+03      61      61 ..     331     331 ..     258     422 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00026
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA   8 dkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegkenLarlYeeG 80 
                 +++ e++e+ ++l +++++l +++++++ +n+++  + +kl + l++     +e  ++ +e   n  r+++eG
  CCD23889.1 200 EEFIEIKEKSDKLDHTISKLSKNFHKVVRKNDSIADDYSKLSQSLQD----LNEVVSNEDEMLANKLRIFNEG 268
                 688999***************************************53....3444444556666667778877 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 4.9
                 X CS
        YabA  61 e 61 
                 +
  CCD23889.1 331 N 331
                 1 PP

>> CRR7  Protein CHLORORESPIRATORY REDUCTION 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.3   3.1e+03      21      55 ..     158     196 ..     151     199 .. 0.61
   2 ?   11.0   0.4   0.00047      0.44      17      69 ..     196     248 ..     194     258 .. 0.94
   3 ?   -2.7   0.1       8.8   8.3e+03      25      40 ..     364     379 ..     355     413 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.3
                 SEEE-HHHH...HHHHHHHHHH-TTTS-HH.HHH---HH CS
        CRR7  21 Eqfltaeel...lekLkelLekeqdelprd.laklesle 55 
                 Eqfl ++e    +  L+  L+++++e++   ++++++++
  CCD23889.1 158 EQFLVSNEWeayRRSLSGNLQTNKEEVSDTiMNAFKTVH 196
                 788877775111456888888866666544145566655 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00047
                 SSS-SEEE-HHHHHHHHHHHHHH-TTTS-HHHHH---HHHHHHHHHHH---EE CS
        CRR7  17 pnqpEqfltaeellekLkelLekeqdelprdlaklesleeqaqyLldtaceLe 69 
                 +nq+E+f++ +e  +kL ++++k +++  + ++k +s+ +  ++L ++  +L+
  CCD23889.1 196 HNQSEEFIEIKEKSDKLDHTISKLSKNFHKVVRKNDSIADDYSKLSQSLQDLN 248
                 69*******************************************99998885 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 8.8
                 -HHHHHHHHHHHHHH- CS
        CRR7  25 taeellekLkelLeke 40 
                 + e   ++L+  L++ 
  CCD23889.1 364 KLETKITTLTGELDNA 379
                 4444444444444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1643  (0.0916392); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.48
# Mc/sec: 2732.63
//
Query:       CCD23890.1  [L=287]
Description: hypothetical protein NDAI_0C02300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-21   75.0   0.2    5.4e-21   74.4   0.2    1.3  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    1.3e-14   54.1   0.0    2.3e-14   53.3   0.0    1.3  1  MafB19-deam      MafB19-like deaminase
    0.00075   19.4   0.1     0.0012   18.7   0.1    1.3  1  APOBEC_N         APOBEC-like N-terminal domain
     0.0043   17.2   0.0     0.0088   16.2   0.0    1.5  1  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4
  ------ inclusion threshold ------
      0.012   15.7   0.3      0.044   13.9   0.0    2.0  2  NAD1             Novel AID APOBEC clade 1
      0.024   14.5   0.0      0.046   13.6   0.0    1.5  1  Inv-AAD          Invertebrate-AID/APOBEC-deaminase
      0.053   13.6   0.9       0.25   11.4   0.9    2.0  1  Bd3614-deam      Bd3614-like deaminase
      0.057   13.5   0.0       0.14   12.2   0.0    1.7  1  APOBEC2          APOBEC2


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.2   2.4e-24   5.4e-21       6     100 ..      34     135 ..      30     136 .. 0.93

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 2.4e-24
                      HHHHHHHHHHHHHHTTTSCSEEEEEEE..TTEEEEEEESBHHCCTGTTB-HHHHHHHHHHHH.TSSCE....TTEEEEEEE--BHHHHHHHHHH CS
  dCMP_cyt_deam_1   6 kllelalkaakeaqkcsnfkVGavivk..ngeiistgyngepaggsktiHAEvnAilkaakn.ggskl....egatlyvtlePCsmCakaiiqs 92 
                      + ++la+k+a++a ++++++V++++++  ++ +i++g n ++++ + ++HAE + i ++ +  g  +l    ++ +lyvt+ePC mCa a+ q+
       CCD23890.1  34 ERMKLAIKLARYALDHNETPVACIFIHepTNSVIAYGLNATNHSLTGVAHAEFMGIEQIKNLvGPHHLmdffKDVVLYVTVEPCIMCASALKQL 127
                      569************************9999****************************999774455788899******************** PP

                      T-SEEEEE CS
  dCMP_cyt_deam_1  93 gikkvvvg 100
                      +ikkvv+g
       CCD23890.1 128 NIKKVVFG 135
                      ******98 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0     1e-17   2.3e-14       5     107 ..      34     145 ..      31     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1e-17
  MafB19-deam   5 kafrkalaevekatkikedkigaviv..kdkkviargsnekelnakataHaEiaalqqAakklkskrl....ddatlyvtlepCdmCagaivqaglkk 96 
                  + ++ a+++++ a++ +e +++++ +    + via g n ++      aHaE   ++q  + ++  +l    +d++lyvt+epC mCa a+ q ++kk
   CCD23890.1  34 ERMKLAIKLARYALDHNETPVACIFIhePTNSVIAYGLNATNHSLTGVAHAEFMGIEQIKNLVGPHHLmdffKDVVLYVTVEPCIMCASALKQLNIKK 131
                  6799999****************888434689***************************9888877764444799*********************** PP

  MafB19-deam  97 lvygagnpks...l 107
                  +v+g++n+ +    
   CCD23890.1 132 VVFGCANERFggnG 145
                  ******99886663 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   5.6e-07    0.0012       8      96 ..      43     128 ..      36     136 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 5.6e-07
                 SSSGTT--S-E.EEEEEEEEESSSEEEEEEEEEEE-..SSTBCHHHHHHHHHHHHT--...TTEEEEEEEEESS-S-HH....HHHHHHHHH CS
    APOBEC_N   8 vrkasgrkktf.lcyeVkrssgkrklskkGvLrnqsgaaaskHaEelflediedqelre..pkkkyeitlYvswsPChessdeCaeklaafl 96 
                  r+a  +++t  +c  + +  ++      G     ++    +HaE + +e+i++   ++  ++    + lYv++ PC      Ca++l+++ 
  CCD23890.1  43 ARYALDHNETPvACIFIHEPTNSVI--AYGLNATNHSLTGVAHAEFMGIEQIKNLVGPHhlMDFFKDVVLYVTVEPCIM----CASALKQLN 128
                 6778888888777777777744444..455522233333379*************6666599*****************....*****9875 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.9e-06    0.0088      22      63 ..      77     127 ..      61     133 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.9e-06
       SNAD4  22 e.....haEllflekikseldpsqe....yrvtwylswsPCaeCaekiaef 63 
                 +     haE + +e+ik+ + p++      +v++y+++ PC  Ca+++ ++
  CCD23890.1  77 SltgvaHAEFMGIEQIKNLVGPHHLmdffKDVVLYVTVEPCIMCASALKQL 127
                 233456**********774444444556689***************99775 PP

>> NAD1  Novel AID APOBEC clade 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     2e-05     0.044      27      91 ..      56     126 ..      31     132 .. 0.68
   2 ?   -1.3   0.0      0.92   2.1e+03       3      23 ..     221     241 ..     215     248 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2e-05
        NAD1  27 cyevkrkssssllkGvl.eneskc...HaEllflnkikslklldpsq..kykvtwylswSPCseCasklae 91 
                 c  +++ ++s +  G+  +n+s +   HaE + +++ik+l   ++      +v++y++  PC  Cas l +
  CCD23890.1  56 CIFIHEPTNSVIAYGLNaTNHSLTgvaHAEFMGIEQIKNLVGPHHLMdfFKDVVLYVTVEPCIMCASALKQ 126
                 555554455555555431442221344**********777664333344789**************99876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.92
        NAD1   3 lseeeFkfqFknvevasgrnk 23 
                 +++e+F ++F   ++ +++n+
  CCD23890.1 221 IDRETFIQEFGSAQSIHYENN 241
                 677888888888877776654 PP

>> Inv-AAD  Invertebrate-AID/APOBEC-deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     2e-05     0.046       3      68 ..      57     122 ..      55     134 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2e-05
     Inv-AAD   3 vlvdadkneilatGytlel...eGnthaeqccliklaekhevaeeklaevlpkntvlYttmepCskRls 68 
                 +++++ +n+++a G         G  hae   + ++   + v  ++l +++ k++vlY t+epC    s
  CCD23890.1  57 IFIHEPTNSVIAYGLNATNhslTGVAHAEFMGIEQIK--NLVGPHHLMDFF-KDVVLYVTVEPCIMCAS 122
                 5678889999999987654334899999977766664..345566777765.689*********87665 PP

>> Bd3614-deam  Bd3614-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.9   0.00011      0.25      75      95 ..     105     125 ..      49     136 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
  Bd3614-deam  75 eegarllvtlqcCkmCAalvv 95 
                   ++ +l+vt ++C mCA+ + 
   CCD23890.1 105 FKDVVLYVTVEPCIMCASALK 125
                  57899************8765 PP

>> APOBEC2  APOBEC2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   6.1e-05      0.14      49      91 ..      81     126 ..      33     132 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.1e-05
     APOBEC2  49 kcHaEllflskvkk.kkleekkey..kvtwyvswsPCaeCaeevae 91 
                  +HaE + ++++k+    ++  ++  +v +yv+  PC  Ca+ + +
  CCD23890.1  81 VAHAEFMGIEQIKNlVGPHHLMDFfkDVVLYVTVEPCIMCASALKQ 126
                 34***********94333443443237**************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2087.25
//
Query:       CCD23891.1  [L=685]
Description: hypothetical protein NDAI_0C02310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.1e-262  870.4  12.3   5.9e-262  870.2  12.3    1.0  1  HSP70           Hsp70 protein
      3e-19   69.0   1.7    7.3e-18   64.5   0.3    2.1  2  MreB_Mbl        MreB/Mbl protein
     0.0018   18.7   5.7       0.96    9.9   0.3    3.8  3  FtsA            Cell division protein FtsA
     0.0038   16.8   0.3        0.1   12.1   0.3    2.3  1  BcrAD_BadFG     BadF/BadG/BcrA/BcrD ATPase family
     0.0092   15.3   1.8       0.21   10.8   0.0    2.9  3  Hydantoinase_A  Hydantoinase/oxoprolinase
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.57    9.9   0.0    2.0  2  FGGY_C          FGGY family of carbohydrate kinases, C-termin
       0.47   10.7   4.5         14    6.0   0.1    3.8  4  DUF5300         Domain of unknown function (DUF5300)


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  870.2  12.3  2.3e-265  5.9e-262       1     598 [.      52     654 ..      52     655 .. 0.99

  Alignments for each domain:
  == domain 1  score: 870.2 bits;  conditional E-value: 2.3e-265
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 viGiDLGtt+s+vavm++gk+e++ane+gnr+tPs+vaFt++erl+G+aAk+q ++np+nt+f++KrliG k++d +vqk+ k+lp++v +k +gk+ v
  CCD23891.1  52 VIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLIGDAAKNQIASNPTNTIFDIKRLIGLKYNDRSVQKDLKHLPFSVINK-DGKPAV 149
                 79****************************************************************************************99.9***** PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSS CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGgg 196
                 ev+++ge  +ftpe+is+m+L k+k++ae+ylg+kvt+av+tvPaYfndaqRqatkdAg+iAGLnvlRivNepTAaa+aYGldk+++e++++vyDlGgg
  CCD23891.1 150 EVTVKGEakTFTPEEISGMILGKMKQIAEDYLGNKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAYGLDKDESEHQIIVYDLGGG 248
                 ******999****************************************************************************************** PP

                 XEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEEH CS
       HSP70 197 tfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlseklsR 295
                 tfdvS+l++e+Gvfev+aT+gDthlGGedfD ++v+ l++ fkkk+gid+s+++kal +lk++aekaK++LSs  q ++++ei+++ + g dlse+l+R
  CCD23891.1 249 TFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRSLSS--QMSTRIEIDSFVD-GIDLSETLTR 344
                 *************************************************************************..89999999***99.********** PP

                 HHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEBESS- CS
       HSP70 296 akfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpDeavaiGAAvqagvlsgeeevkdllllDvtpLs 393
                 akfeel+ dl+++tl+pvek+l+d++l+k++id++vlvGGstRiPkvq+l++++f+ k++sk++npDeava+GAAvqagvlsgee v+d++llDv++L+
  CCD23891.1 345 AKFEELNLDLFKKTLKPVEKVLQDSGLSKKDIDDIVLVGGSTRIPKVQQLLESYFDgKKASKGINPDEAVAYGAAVQAGVLSGEEGVEDIVLLDVNALT 443
                 *******************************************************88****************************************** PP

                 EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCCEE CS
       HSP70 394 lgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketgkee 492
                 lgiet+ggvmt li+rnt+iptkksq+fsta dnq++v i+v++ger++ kdn+llg+fel+gippaprGvpqieVtf +danGil+vsa+dk+tgk+e
  CCD23891.1 444 LGIETSGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIQVFEGERAMSKDNNLLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSE 542
                 *************************************************************************************************** PP

                 EEEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.GGGSTHHHH....HHHHHHHHHHHCHTTSSCHHHHHHHHHH CS
       HSP70 493 eitieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee.aekvseaek....ekvesaieeLkeeleeeekeeieaktee 585
                 +iti++++g ls+++ie+mv++ae++a+ed++ k++ie++n++e++++s++++++ e +ek++e++k    ++ +++ie+L+++ +++ +e++ +k e+
  CCD23891.1 543 SITITNDKGrLSQDDIERMVEEAEKFASEDAAVKAKIESRNKLENYAHSIKNQVNGElGEKLEEDDKetllDAANDTIEWLEDNFDSATAEDFDEKFEA 641
                 *********9*********************************************999********99999999************************* PP

                 HHHHHHHHHHHHH CS
       HSP70 586 lkkvvekiaekly 598
                 l+kv+++i++kly
  CCD23891.1 642 LSKVAYPITSKLY 654
                 ********99987 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0092        23       3      51 ..      52     106 ..      50     119 .. 0.61
   2 !   64.5   0.3   2.9e-21   7.3e-18      82     316 ..     173     419 ..     162     426 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0092
                 EEEEEE-SSEEEEEE..TTTEEEE.EE......ES-EEEETTT--EEEESHHHHTTTT CS
    MreB_Mbl   3 dlgiDLGtantlvyv..kgkgivl.ne......psvvAikkktkkvlavGeeAkkmlg 51 
                  +giDLGt+   v v  +gk  +l ne      ps vA++ +++    +G+ Ak+ + 
  CCD23891.1  52 VIGIDLGTTYSCVAVmkNGKTEILaNEqgnritPSYVAFTDDER---LIGDAAKNQIA 106
                 59*******98886611455445414344444467777665554...34666666665 PP

  == domain 2  score: 64.5 bits;  conditional E-value: 2.9e-21
                 HHHHHTSS-S.S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEE.EE-SS-EEEEEEETTEEE.....EEEEE CS
    MreB_Mbl  82 ikkvkkkksl.skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgnmvv.diGggttevavislggiv.....tsksv 173
                 +k+++++    + ++ v++vP   ++ +r+A k+a + aG +   +++ep aAAi  gl+ +e++ +++v d+Gggt +v+++s+ + v     ts   
  CCD23891.1 173 MKQIAEDYLGnKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAYGLDKDESEHQIIVyDLGGGTFDVSLLSIENGVfevqaTSGDT 271
                 44444433332556789***********************************************9998776*************976552222234457 PP

                 S-SHHHHHHHHH....HHHHHHHSEE--HHHH..HHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS- CS
    MreB_Mbl 174 rvaGdeldeaii....kyirkkynlliGerta..ekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektp 265
                 +++G+++d +i+    k  +kk+ + + +++    k+k e  +a+ + +++ +++i+    v g+  + +++ ++ +e   + +++ ++ v++vL++  
  CCD23891.1 272 HLGGEDFDYKIVrqliKAFKKKHGIDVSDNNKalAKLKREAEKAKRSLSSQmSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSG 370
                 89******99972111445889999998765412677888888877766667999999*************************************9864 PP

                 HHHHH.HHHHH-EEEESGGGGSBTHHHHHHHHHS.S-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 266 peLaa.divdrgivltGGgallkgldkllseetg.lpvkvaedpltcvakGtg 316
                   L++ di    ivl+GG++ +  +++ll++ ++  + + + +p ++va G++
  CCD23891.1 371 --LSKkDID--DIVLVGGSTRIPKVQQLLESYFDgKKASKGINPDEAVAYGAA 419
                 ..6651664..4999****************9972457778899999999986 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.3   0.00038      0.96       1      37 [.      53      97 ..      53     207 .. 0.65
   2 !    7.0   0.1    0.0031       7.9      37      97 ..     301     411 ..     241     422 .. 0.62
   3 ?    2.3   0.1     0.087   2.2e+02      30      83 ..     543     593 ..     524     658 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00038
                EEEEE-SSSEEEEEEETTEEEEEEEES-.-HHHHHHH..........H CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx..........x RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvigv.ggngitkd..........i 37
                +++D+G++ ++vav+++g   +++++   +gn it +          i
  CCD23891.1 53 IGIDLGTTYSCVAVMKNG---KTEILANeQGNRITPSyvaftdderlI 97
                58***************9...888888778888887655555555551 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0031
                 HHHHHT--HHHHHHHHHHH--S--..............EEEEEHHHHH...........................................GGGGSTTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxx...........................................xxxxxxxx RF
        FtsA  37 iakalrtaveeAerikikyGsala..............ekeigrkels...........................................ggsalpnl 78 
                   kal +   eAe+ k++  s+++              +        +                                           g++ +p++
  CCD23891.1 301 NNKALAKLKREAEKAKRSLSSQMStrieidsfvdgidlS--------EtltrakfeelnldlfkktlkpvekvlqdsglskkdiddivlvgGSTRIPKV 391
                 567778888899999988888888766666666666652........04444444466677777777788888888888888888999999******** PP

                 HHHHHHHHT-..HH.HT-GG CS
                 xxxxxxxxxxxxxx.xxxxx RF
        FtsA  79 eelaeralspklee.vsdpe 97 
                 ++l+e+ +  k+ +   +p 
  CCD23891.1 392 QQLLESYFDGKKASkGINPD 411
                 ******99443222234444 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.087
                 HHHHHHH....HHHHHT--HHHHHHHHHHH--S--EEEEEHHHHHGGGGSTTHHHHHH CS
                 xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        FtsA  30 gngitkd....iakalrtaveeAerikikyGsalaekeigrkelsggsalpnleelae 83 
                 +  it+d     +  +   veeAe+ + +++++ a       ++++ ++l+n ++ ++
  CCD23891.1 543 SITITNDkgrlSQDDIERMVEEAEKFASEDAAVKA-------KIESRNKLENYAHSIK 593
                 66777777786666788899999999955555443.......3333444444333333 PP

>> BcrAD_BadFG  BadF/BadG/BcrA/BcrD ATPase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.3   3.9e-05       0.1       1     266 [.      53     421 ..      53     422 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.9e-05
                  EEEEE-SSEEEEEEEETTTE.EEEEEEE--TTS-HHH.........HHHHHHHHHHT--GGG.................................... CS
  BcrAD_BadFG   1 vGiDgGsTttkavlmdekge.vlgrgitnsanlesvrfeaaekvleealtealerageeead.................................... 61 
                  +GiD+G+T   +++m++ +  +l++ + n    + v f++ e+ + +a ++ ++   ++  +                                    
   CCD23891.1  53 IGIDLGTTYSCVAVMKNGKTeILANEQGNRITPSYVAFTDDERLIGDAAKNQIASNPTN--Tifdikrliglkyndrsvqkdlkhlpfsvinkdgkpa 148
                  79****99777777776665599999999977777777777777777766544433332..1234666777777777777777777777777777777 PP

                  .....................................ECEE..EEESTTCCCTCTTBSEEE-............HHHHHHHHHHHH-TT--....... CS
  BcrAD_BadFG  62 .....................................ieetylvgtgyGratlpekfekeiirs..........eilvhgdGavalypgtr....... 105
                                                          +++v +++++a+ +   ++ +             e ++ + ++++     +       
   CCD23891.1 149 vevtvkgeaktftpeeisgmilgkmkqiaedylgnkvTHAVVTVPAYFNDAQRQATKDAGT--IaglnvlrivnEPTAAAIAYGLD----Kdesehqi 240
                  7777777777777777777777777776666666665444445666777777663333333..24588874433333333333333....23355878 PP

                  EEEEEET..TEEEEEEEE.TTEEEEEEEESS--TTSHHHHHHHHHHHT--TTTHH.HHHTT--.....................S-------SHHHHH CS
  BcrAD_BadFG 106 tvldigG..qdskgiqid.kgkvenfqmndrcaageGrylgiiadelnmglreld.glaekat.....................kkarinstcavfae 178
                   v d gG   d   + i+ +  +++ + +d  ++ge   ++i+++ ++++ ++++ +++++ +                     +++ i s +     
   CCD23891.1 241 IVYDLGGgtFDVSLLSIEnGVFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGiDVSDNNKalaklkreaekakrslssqmsTRIEIDSFVDGIDL 338
                  88888774448888888845567788889999999999999999999999999986666666678999999999999999998888899999999999 PP

                  HHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTT---SS.EEEESGGGG-HHHHHHH.....HHHH-S-EE--GGGGGHHHHHHHHH CS
  BcrAD_BadFG 179 aelrdalsggekaedIlaglhraialrvialisrsggvtdevtltGGvakneaavkelrklvkenygevkininpdsiytgalGAalf 266
                  +e  ++ +  e   d ++++ + +++ +     + ++++d ++l+GG  +      ++++l+++ + ++k    + ++ + a GAa+ 
   CCD23891.1 339 SETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLSKKDIDD-IVLVGGSTRI----PKVQQLLESYFDGKKASKGINPDEAVAYGAAVQ 421
                  9999999999999999999999999999999999999955.9999999998....444566788888888889999999999999875 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.033        84      73     107 ..      44      78 ..      38      88 .. 0.83
   2 !   10.8   0.0   8.1e-05      0.21      58     102 ..     218     263 ..     203     273 .. 0.74
   3 ?   -1.3   0.0      0.41   1.1e+03     225     251 ..     358     384 ..     269     420 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.033
  Hydantoinase_A  73 sklagekkvItfDmGGTstDvslikdgevevslet 107
                      + +++  vI++D+G T   v+++k+g++e+  ++
      CCD23891.1  44 DEVENYGTVIGIDLGTTYSCVAVMKNGKTEILANE 78 
                     46677889********************9986655 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 8.1e-05
  Hydantoinase_A  58 ilSGPaaGvvgaaatsklagekkvItfDmGGTstDvslik..dgeve 102
                     i+  P a ++++    k + e+++I++D+GG ++Dvsl++  +g +e
      CCD23891.1 218 IVNEPTAAAIAYGL-DKDESEHQIIVYDLGGGTFDVSLLSieNGVFE 263
                     55567777776666.7889999**************98651155554 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.41
  Hydantoinase_A 225 manavrklsvergldpkeltlvvfGGa 251
                       ++v+k++++ gl +k+   +v  G+
      CCD23891.1 358 TLKPVEKVLQDSGLSKKDIDDIVLVGG 384
                     345677777777777777765554444 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00022      0.57     145     196 ..     368     424 ..     342     426 .. 0.80
   2 ?   -2.6   0.0       1.5   3.9e+03      45      63 ..     614     634 ..     610     648 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00022
      FGGY_C 145 d...sgkpldrlavdGGgskndllmqllAdilg.vpVerpkt.aeatalGaAilAav 196
                 d   s+k++d ++++GG ++ + ++qll + +  ++  +  + +ea+a GaA+ A+v
  CCD23891.1 368 DsglSKKDIDDIVLVGGSTRIPKVQQLLESYFDgKKASKGINpDEAVAYGAAVQAGV 424
                 14667899***********************998665555555************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.5
      FGGY_C  45 avagslvawlldnl..glree 63 
                  +a ++++wl dn   +++e+
  CCD23891.1 614 DAANDTIEWLEDNFdsATAED 634
                 5789999******53333233 PP

>> DUF5300  Domain of unknown function (DUF5300)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.037        95      44      71 ..     140     169 ..     107     180 .. 0.64
   2 ?   -2.5   0.1       2.4   6.1e+03      39      87 ..     292     340 ..     285     343 .. 0.62
   3 ?   -0.3   0.0      0.52   1.3e+03      59      87 ..     459     487 ..     445     493 .. 0.79
   4 ?    6.0   0.1    0.0056        14      28      69 ..     529     570 ..     511     580 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.037
                 EEEESSS----EEEEEEBT..TS-EEEEEE CS
     DUF5300  44 elsedaksitkvevsGtte..sgkkFtghF 71 
                  + +d k++++v v+G+++  + ++ +g+ 
  CCD23891.1 140 VINKDGKPAVEVTVKGEAKtfTPEEISGMI 169
                 478999*********985411455555554 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.4
                 TT-EEEEEESSS----EEEEEEBTTS-EEEEEE----SS-EEE.EE-EET CS
     DUF5300  39 sketielsedaksitkvevsGttesgkkFtghFsGlvsndtev.vveldE 87 
                 +k+ i++s+++k + k++ + +    +  + + s +++ d+ v  ++l E
  CCD23891.1 292 KKHGIDVSDNNKALAKLKREAEKA-KRSLSSQMSTRIEIDSFVdGIDLSE 340
                 567788888888888877665433.3446666666666666552356655 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.52
                 EEBTTS-EEEEEE----SS-EEEEE-EET CS
     DUF5300  59 GttesgkkFtghFsGlvsndtevvveldE 87 
                  +t    k +  Fs  v n+ +v++++ E
  CCD23891.1 459 RNTAIPTKKSQIFSTAVDNQPTVMIQVFE 487
                 566667788999************99765 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0056
                 -EEEE--B..-TT-EEEEEESSS----EEEEEEBTTS-EEEE CS
     DUF5300  28 kevtvgalekgsketielsedaksitkvevsGttesgkkFtg 69 
                  +v  +   +g++e+i +++d +++ + +++  +e ++kF+ 
  CCD23891.1 529 LKVSATDKGTGKSESITITNDKGRLSQDDIERMVEEAEKFAS 570
                 3333344446789***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1021  (0.0569468); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 4684.37
//
Query:       CCD23892.1  [L=764]
Description: hypothetical protein NDAI_0C02320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-48  162.5   0.1    3.6e-47  160.4   0.0    2.2  2  DEAD          DEAD/DEAH box helicase
    4.7e-26   91.3   0.0    1.3e-25   89.9   0.0    1.8  1  Helicase_C    Helicase conserved C-terminal domain
    4.2e-20   71.7   0.0    8.7e-20   70.7   0.0    1.6  1  DUF4217       Domain of unknown function (DUF4217)
    1.3e-05   25.2   0.0    1.3e-05   25.2   0.0    2.5  3  ResIII        Type III restriction enzyme, res subunit
      0.001   19.3   0.0     0.0029   17.8   0.0    1.7  1  Helicase_C_2  Helicase C-terminal domain
  ------ inclusion threshold ------
       0.16   12.5   0.7         21    5.7   0.2    3.6  3  PIN_6         PIN domain of ribonuclease


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   0.0   1.2e-50   3.6e-47       1     172 [.      65     231 ..      65     235 .. 0.96
   2 ?   -2.0   0.0      0.85   2.5e+03      43      95 ..     287     337 ..     274     350 .. 0.65

  Alignments for each domain:
  == domain 1  score: 160.4 bits;  conditional E-value: 1.2e-50
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng 97 
                 tdiQ+e+ip+ l+g dvl++a+TGsGKTlaflip+l+++y++  ++ +g  al+++PtreLa q+++ l k++ y++l++ l+igg++ + + ++l ++
  CCD23892.1  65 TDIQRESIPISLKGYDVLGSAKTGSGKTLAFLIPILEKLYREkwTEFDGLGALVISPTRELAMQIYEVLLKIGTYTSLSAGLVIGGKDVKFESERL-SK 162
                 89***************************************98889**************************************************.** PP

                 CSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 ++i++gtpgr++++l +   ln+s++++lVlDEadr ld+gf++++++i+++l       +++rq++++SAT +++
  CCD23892.1 163 INILIGTPGRILQHLdQAIALNTSNLQMLVLDEADRCLDMGFKKTLDAIVSNL-------PASRQTLLFSATQSQS 231
                 ***************76778*********************************.......68899*******8865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.85
                 TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  43 kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld 95 
                 k+  + k+++   + + ++ ++++++k+   i+l  l   g ++++   ++ld
  CCD23892.1 287 KSHLKHKMIVFLSSSKQVHFVYETFRKLQPGISLMHL--HGRQKQKARTETLD 337
                 4555667788888888888889999998887765444..45444444444443 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.0   4.2e-29   1.3e-25       1     111 []     277     388 ..     277     388 .. 0.91

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 4.2e-29
                 HHHHHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C   1 dkleallellkleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv 97 
                 dkl++l+ ++ +++ ++k+++f+ + ++++   + +++ + gi+   lhg+ +q+ r e+l++f + ++ +L atdv++rGid+p+v+ Vi++d+p++ 
  CCD23892.1 277 DKLDILYSFI-KSHLKHKMIVFLSSSKQVHFvYETFRKLQpGISLMHLHGRQKQKARTETLDKFSRAQQVCLFATDVVARGIDFPSVDWVIQVDCPEDA 374
                 69999****9.8999************99656566644447***********************888888***************************** PP

                 HHHHHHHTTSSSTT CS
  Helicase_C  98 tsyiqriGRtgRag 111
                 ++yi+r+GR++R+g
  CCD23892.1 375 DTYIHRVGRAARYG 388
                 ************86 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   2.9e-23   8.7e-20       1      61 []     429     489 ..     429     489 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 2.9e-23
     DUF4217   1 iqqkleslcakdrdlkelAqkAfvsyvraYsvhlake..iFrvkkLdlealAksfGLleaPki 61 
                 i+ +l+sl++kd++lk+l+qkAf+syvr  s + +k+  +F++++L  ea+A+s+GL++aPki
  CCD23892.1 429 IKPQLQSLLFKDPELKYLGQKAFISYVR--SIYIQKDkeVFNFESLATEAFANSLGLPGAPKI 489
                 689*************************..*****9999***********************8 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.5e-09   1.3e-05      26     168 ..      80     227 ..      12     230 .. 0.76
   2 ?   -4.6   3.9         6   1.8e+04      86     129 ..     531     577 ..     506     648 .. 0.53
   3 ?   -3.6   0.1       3.2   9.5e+03     106     122 ..     644     665 ..     616     684 .. 0.49

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 4.5e-09
                 EEEEEESTTSTHHHHH.HHHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH. CS
      ResIII  26 rglikmaTGtGKTlva.aklierllkkgkee....kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadse 119
                  +l  + TG+GKTl   + + e+l+++++ e     +l++ p+++l  q +e + k+   +  ++g ++ g+  k+++++ ++++il+ t  ++ +++ 
  CCD23892.1  80 DVLGSAKTGSGKTLAFlIPILEKLYREKWTEfdglGALVISPTRELAMQIYEVLLKIGTYTSLSAGLVIGGKDVKFESERLSKINILIGTPGRILQHL- 177
                 5666789*******998999999999999999*************************999999999999999999999999*****************. PP

                 .......HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS CS
      ResIII 120 eeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTAT 168
                     +   l  ++ ++++ DEa r  ++   k+  +i+ ++++    l ++AT
  CCD23892.1 178 ---DQAIALNTSNLQMLVLDEADRCLDMgfkKTLDAIVSNLPAsRQTLLFSAT 227
                 ...556666666677************87766888887777664566889999 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 6
                 EEEESSS-B--.......-SEEEEEHHHHHHTH............HHH CS
      ResIII  86 gkkvsgdkkkakekdstnkkilvttiqsldadseee....eeeseell 129
                  +k+++  +++ ++ + + ++l +t +++ ad++e+    ++++++l 
  CCD23892.1 531 RTKYDKMFERK-NQTILSEHYLNITQSQAAADEDEDfmtvKRQDHQLN 577
                 22222222222.333344444444444444444344555533333222 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.2
                 EEEEEHHHHHHTH......... CS
      ResIII 106 ilvttiqsldadseee.....e 122
                  ++++++ + a+ +++     +
  CCD23892.1 644 DFLSKESDVMAEVDTGdkqvaK 665
                 2333333333333222222221 PP

>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   9.6e-07    0.0029       7      84 ..     289     361 ..     283     372 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 9.6e-07
  Helicase_C_2   7 vvpggvlvffpSyklleevverlkeeleskkieifvee...keesrekvleeykekkkkgaillavcrGklsEGidfsddl 84 
                     +++++vf +S k+++ v+e++++     +i++++ +   k++ r+++l+++++   ++ +l+a+    +  Gidf+  +
    CCD23892.1 289 HLKHKMIVFLSSSKQVHFVYETFRKLQP--GISLMHLHgrqKQKARTETLDKFSR--AQQVCLFATD--VVARGIDFP--S 361
                   5689********************9764..4433332223399************..*********9..********8..4 PP

>> PIN_6  PIN domain of ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.37   1.1e+03      51      77 ..     118     144 ..     101     145 .. 0.87
   2 ?    1.5   0.0      0.14   4.3e+02      63      81 ..     226     244 ..     206     247 .. 0.81
   3 ?    5.7   0.2    0.0071        21      27      71 ..     661     707 ..     647     710 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.37
       PIN_6  51 vrePspesvkkvtefakktGDlsvLSk 77 
                 v +P++e    + e+  k+G +++LS+
  CCD23892.1 118 VISPTRELAMQIYEVLLKIGTYTSLSA 144
                 6789999999***************96 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.14
       PIN_6  63 tefakktGDlsvLSktDie 81 
                  + ++  GDl+ LS tD +
  CCD23892.1 226 ATQSQSLGDLARLSLTDYK 244
                 5678999**********87 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0071
       PIN_6  27 peVvaEirdkkarerlellp..lelevrePspesvkkvtefakktGD 71 
                 ++V +E r++k+r+rlel+   +e++++e +++s + v ++   tG+
  CCD23892.1 661 KQVAKEKRQEKKRKRLELMRreMEMSLEEEEASSGEDVANAYVGTGN 707
                 689***************99544677777777777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1377  (0.0768029); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5411.15
//
Query:       CCD23893.1  [L=199]
Description: hypothetical protein NDAI_0C02330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-24   86.7   0.1    2.2e-24   86.3   0.1    1.2  1  HORMA     HORMA domain
     0.0034   16.7   0.1     0.0037   16.5   0.1    1.1  1  DUF1682   Protein of unknown function (DUF1682)


Domain annotation for each model (and alignments):
>> HORMA  HORMA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.1   2.4e-28   2.2e-24       1     179 [.      10     167 ..      10     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 86.3 bits;  conditional E-value: 2.4e-28
       HORMA   1 SlelvkellaasissilylRglfpedaFedrklsglklkiLlrgsseeadrlldwLekGvfdaLekkyLealiltIy.kdkdepenvlEsYtFsfkytk 98 
                 S+ +++e++++si+sily+Rg++p+d+F+  k+  + l  L+ +++e  + + ++L + v ++L  ++  +l+l+I+ kd+ e   v+E++ F++++ +
  CCD23893.1  10 STRVITEFFEYSINSILYQRGVYPADDFSPAKK--YGLTLLKTHDDELKSYIRKILLQ-VHKWLLGGKCNKLVLCIVdKDEGE---VVERWAFEISHLS 102
                 7899****************************9..99999988885555557777777.888999***********9666666...***********77 PP

       HORMA  99 sggkedvssskletkkknleslsldekeeekkktekevkkelealirrlitltqsLpplpekryltmkLlytdd....tPedyeP 179
                 +++++                    e+ ++++ t+ e++++++ lir++++++++Lp+l ++   t+++l ++d    +P ++  
  CCD23893.1 103 QTDDS--------------------EDIKDEANTKTETQNQIRGLIRQITASVTFLPELTKEGSYTFNVLAYTDayakVPLEWAD 167
                 44441....................11456667999*********************************9999989999999943 PP

>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   4.2e-07    0.0037     126     211 ..      74     166 ..      34     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.2e-07
     DUF1682 126 amdgfVfavvkKkemkklrkdrydlesltktkdnsklpeelvvmsEsaevtealltpe......llkalnkagklleyliitDqpskkpet.k 211
                 +  ++V+++v K+e + +++  ++++ l +t d++++++e+   +E+++    l+ +       l ++ ++ +  ++ l+ tD ++k p +  
  CCD23893.1  74 KCNKLVLCIVDKDEGEVVERWAFEISHLSQTDDSEDIKDEANTKTETQNQIRGLIRQItasvtfLPELTKEGSYTFNVLAYTDAYAKVPLEwA 166
                 5899*********************999**********99*******7777777655556666444777789999***********8887642 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1530.48
//
Query:       CCD23894.1  [L=387]
Description: hypothetical protein NDAI_0C02340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-16   57.6   0.1    4.6e-09   36.0   0.0    3.4  2  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN
    1.7e-05   24.8   0.3    0.00019   21.5   0.0    2.3  2  RRM_7          RNA recognition motif
  ------ inclusion threshold ------
      0.034   13.6   0.5      0.066   12.7   0.5    1.4  1  Vps8           Golgi CORVET complex core vacuolar protein 8
      0.089   12.8   0.1        2.5    8.1   0.0    2.4  2  Bac_rhamnosid  Bacterial alpha-L-rhamnosidase concanavalin-li


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0     1e-12   4.6e-09       1      68 [.     133     207 ..     133     209 .. 0.90
   2 !   17.2   0.0   7.4e-07    0.0033      24      69 ..     307     350 ..     287     351 .. 0.78

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 1e-12
                 EEEESETTTSSHHHHHHHHHTTSCEE.......EEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpik.......siklvrdetgkskgfafVeFeskedAekAlealngkklggre 68 
                 ++++nLp+d+te+eL + F ++G i+       ++kl++d++gk kg a + ++  e+ + A++ ++++ l+g+ 
  CCD23894.1 133 IYISNLPKDITEDELIREFTHYGIIRktsegeiRCKLYKDSDGKVKGDALIVYARIESVQLAIDMMDKTILRGSI 207
                 8**********************99634444446999999******************************99975 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 7.4e-07
                 CEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  24 piksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                  +k i+ +    + s+g a V +e+  +A ++ + l+g+ ++gre+
  CCD23894.1 307 TVKGIERFE--LDESNGRALVVYEDVPSALNCRSLLDGRFFDGREI 350
                 344444444..4789*****************************98 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.13   5.7e+02      55      87 ..      27      59 ..      17      89 .. 0.86
   2 !   21.5   0.0   4.2e-08   0.00019       4      73 ..     133     201 ..     131     226 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.13
       RRM_7 55 lvfedeksvkaLleacteeeeelylklssrrlk 87
                +vf + +sv +L ++ +++ + ly+ + ++ +k
  CCD23894.1 27 IVFLSVSSVSDLTDSFKSQMHALYVFITTHNVK 59
                688899999999999999998888888776655 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 4.2e-08
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLleactee 73 
                 +++  lP Dite+el++ f ++g ++    ++ ++k ++ +  k +kg + +v+ + +sv+  ++   + 
  CCD23894.1 133 IYISNLPKDITEDELIREFTHYGIIRKTSEGEIRCKLYKDSDGK-VKGDALIVYARIESVQLAIDMMDKT 201
                 79999******************************999886555.89**************988766554 PP

>> Vps8  Golgi CORVET complex core vacuolar protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   1.5e-05     0.066       6      66 ..      49     112 ..      46     114 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.5e-05
        Vps8   6 Lepyilsgklks...lppevvkalvehysskgelerleelilhldpksLDldqvlklckehrLy 66 
                 L  +i   ++k+   l  +++++lv  y+++++ + + ++  +++ ++LDl  +l+l+k+++L 
  CCD23894.1  49 LYVFITTHNVKYifqLKVNMISSLVLKYKHSKKSSIALKIAHRMEKEELDLKEALRLLKKQELE 112
                 5566666666653338899******************************************995 PP

>> Bac_rhamnosid  Bacterial alpha-L-rhamnosidase concanavalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00056       2.5       4      52 ..      56     104 ..      53     152 .. 0.79
   2 ?    2.1   0.0     0.041   1.8e+02      24      55 ..     226     260 ..     221     291 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00056
                    ETTEEEEEEEEEEEEEEEEEE---TT-EEEEEEESEE-TTS-EE.-GGGT CS
  Bac_rhamnosid   4 kdgttvlDlGqnlaGvirlkvkgeeGtevklrfgEvLeddgevd.trnlr 52 
                    ++ ++++ l  n++  ++lk k ++ +++ l+ + ++e + e+d ++ lr
     CCD23894.1  56 HNVKYIFQLKVNMISSLVLKYKHSKKSSIALKIAHRME-KEELDlKEALR 104
                    566899********************************.55555455553 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.041
                    E---TT-EEEEEEESEE-...TTS-EE-GGGTT-- CS
  Bac_rhamnosid  24 vkgeeGtevklrfgEvLe...ddgevdtrnlrkak 55 
                     ++eeG++v l+ g  L+   +dg++++++ ++  
     CCD23894.1 226 NNAEEGDHVPLKRGKQLQkyaEDGTIQDDSAKEVS 260
                    6899*************988889999887765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1255  (0.0699983); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3121.59
//
Query:       CCD23895.1  [L=158]
Description: hypothetical protein NDAI_0C02350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-12   47.6   0.0    2.1e-12   47.3   0.0    1.1  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.3e-06   28.4   0.0    1.8e-06   27.9   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    3.7e-06   27.3   0.0    6.1e-06   26.6   0.0    1.4  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0018   18.9   0.0     0.0023   18.6   0.0    1.1  1  Acetyltransf_3   Acetyltransferase (GNAT) domain
     0.0062   16.7   0.0     0.0072   16.5   0.0    1.1  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.013   15.6   0.1      0.033   14.3   0.0    1.6  2  Acetyltransf_CG  GCN5-related N-acetyl-transferase
       0.06   13.1   0.1        0.3   10.8   0.0    2.1  3  PanZ             Acetyltransferase (GNAT) domain, PanZ
       0.11   12.4   0.0       0.19   11.7   0.0    1.5  1  FR47             FR47-like protein
       0.12   12.4   0.1       0.38   10.8   0.1    2.0  1  Acetyltransf_9   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   1.1e-15   2.1e-12       8     116 ..      23     141 ..      18     142 .. 0.84

  Alignments for each domain:
  == domain 1  score: 47.3 bits;  conditional E-value: 1.1e-15
                     HHHHTHHHHHHHHHHH....HHHHHHSTTCEEEEEEET....TEEEEEEEEEEEET..TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT CS
  Acetyltransf_1   8 lvesffppnedaseee....feesfsleaegllvaeed....geliGfisllkipd..ekggvayieslaVspeyrgkGlGsaLlealeeraree 92 
                     l++++ + +++++ e+     +e+f +++   ++a  +    +++iG++++l      +  g++++++l+V ++ r kG+G++L+e + +   + 
      CCD23895.1  23 LWKQYQKCYNRTMKEDipllTFERFLDPEVKMWAAFAIntttNKPIGMVTYLHHFTtwNLDGKIFLHDLFVQEDQRVKGVGRKLMEFVYDASDRM 117
                     45556666677777777777788889999999997777567777*****9999998996689****************************66666 PP

                     TESEEEEEEETTEHHHHHHHHHTT CS
  Acetyltransf_1  93 gikkivlaveedndaairlYeklG 116
                      +  +++++++ n++a+ lY+k+G
      CCD23895.1 118 DVPFVYWTTDDFNHRAQLLYTKVG 141
                     99*****88777**********98 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   8.9e-10   1.8e-06      22     117 ..      44     153 ..      22     157 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 8.9e-10
  Acetyltransf_10  22 lrerieegealllvaeeg....gkivGviel.rdgs........hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpf 100
                      +++ + ++e+++++a+      +k++G++++              ++ lfV++++r +G+g++L+e+v ++ ++++      t +  +  a+ +
       CCD23895.1  44 FERFL-DPEVKMWAAFAIntttNKPIGMVTYlHHFTtwnldgkiFLHDLFVQEDQRVKGVGRKLMEFVYDASDRMDVPFvYWTTDDFNhRAQLL 136
                      44444.7777777777542333888899977444336778888899***************************99999898899888889999* PP

  Acetyltransf_10 101 YeklGFkavgeeqeenG 117
                      Y k+G k+ +   e+ G
       CCD23895.1 137 YTKVGKKTSKVLYERGG 153
                      ****9888888777766 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   3.1e-09   6.1e-06      12      73 ..      65     141 ..      50     154 .. 0.65

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.1e-09
                     TEEEEEEEEEEES........TCTEE...EEE-GGGTTSSHHHHHHHH.......TTSEEE...EEEEEETHH...HHHHHHHHTT CS
  Acetyltransf_7  12 gkivGfialslld........aeitr...laVdpeyrgkGiGraLlea.......aekgii...leqlelnae...kaikfYeklG 73 
                     +k++G++ + ++             +   l+V ++ r kG+Gr+L+e+                +   +++++   +a+ +Y k G
      CCD23895.1  65 NKPIGMVTYLHHFttwnldgkI---FlhdLFVQEDQRVKGVGRKLMEFvydasdrM----DvpfV--YWTTDDfnhRAQLLYTKVG 141
                     7888988877776776665433...1456******************855433220....12221..2232212348888888887 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.2e-06    0.0023       2     136 ..       7     141 ..       6     143 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.2e-06
  Acetyltransf_3   2 LlLrplteeDleal.felrsdpe.vmrylpepltleeaeewlerawaeeseeegyg.waivlkdtgviGsv.glrdleeedee...aelgymlap 89 
                     +++rp++e+D +++ + + + ++  +r ++e+ +l   e++l++        + +  +ai++  ++ iG+v  l+++  ++     +  ++ +++
      CCD23895.1   7 VVIRPIQETDKDDWlLLWKQYQKcYNRTMKEDIPLLTFERFLDPE------VKMWAaFAINTTTNKPIGMVtYLHHFTTWNLDgkiFLHDLFVQE 95 
                     589**********94457666664444455555556666666643......3444459997666646****555566666555664444566777 PP

  Acetyltransf_3  90 sfwgkGyateavralleyafeelglerlvavidkeNeaSirvleklG 136
                     + + kG+++  ++ + ++  ++++++ +++++d  N++ + +++k+G
      CCD23895.1  96 DQRVKGVGRKLMEFVYDAS-DRMDVPFVYWTTDDFNHRAQLLYTKVG 141
                     7899999999999999988.9999*********************99 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.6e-06    0.0072       1     115 [.       9     123 ..       9     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.6e-06
  Acetyltransf_4   1 iraateeDakeilaiyaeyvvntaitfeyevssveefekflealdsekeyvflvae.sdrivGyaylg.qfkkrakdwkaelsvylaerdnnkeg 93 
                     ir ++e D + +l + ++y+  +  t +++++    fe+fl++   + +  f +     + +G+ ++   f     d+k  l  +++++d++ +g
      CCD23895.1   9 IRPIQETDKDDWLLLWKQYQKCYNRTMKEDIPL-LTFERFLDPE-VKMWAAFAINTtTNKPIGMVTYLhHFTTWNLDGKIFLHDLFVQEDQRVKG 101
                     89999*********9999988888888877775.56*******6.888***************98776478777999999999888889****** PP

  Acetyltransf_4  94 lgrelidaleqvlkeqnienll 115
                     +gr+l++++ +   ++ +   +
      CCD23895.1 102 VGRKLMEFVYDASDRMDVPFVY 123
                     *******998877766665555 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.6e-05     0.033       2      52 ..      58     113 ..      57     119 .. 0.85
   2 ?   -2.2   0.0       2.3   4.6e+03       7      22 ..     127     142 ..     121     148 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
  Acetyltransf_CG   2 feltldegeevafleYe.....vrkegvldfthTeVpeelrGkGiAkkLvkaaldd 52 
                      f +++ +++ ++ ++Y      ++ +g++ ++  +V+e  r kG+++kL++ + d 
       CCD23895.1  58 FAINTTTNKPIGMVTYLhhfttWNLDGKIFLHDLFVQEDQRVKGVGRKLMEFVYDA 113
                      666666678999999966788877778************************99986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.3
  Acetyltransf_CG   7 degeevafleYevrke 22 
                      d+ ++ a+l Y++ ++
       CCD23895.1 127 DDFNHRAQLLYTKVGK 142
                      3355788888875544 PP

>> PanZ  Acetyltransferase (GNAT) domain, PanZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0         1   2.1e+03       3      32 ..       8      37 ..       6      44 .. 0.69
   2 ?   -1.3   0.0      0.86   1.7e+03      90     116 ..      49      75 ..      40      79 .. 0.70
   3 ?   10.8   0.0   0.00015       0.3      61      90 ..      85     114 ..      78     139 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1
        PanZ  3 tierltelsaqdkiDLakIypaqsaealea 32
                 i+ ++e+++ d   L k y + +++++++
  CCD23895.1  8 VIRPIQETDKDDWLLLWKQYQKCYNRTMKE 37
                567777777777777777777666666654 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.86
        PanZ  90 aPevkswvlaeedvkeldlavlqafle 116
                  Pevk w     ++++++   + ++l+
  CCD23895.1  49 DPEVKMWAAFAINTTTNKPIGMVTYLH 75 
                 599999998888877766666666665 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00015
        PanZ  61 eaelsdlcVRevTRrRGVgsyLleearrqa 90 
                 +  l+dl V e  R +GVg++L+e + +  
  CCD23895.1  85 KIFLHDLFVQEDQRVKGVGRKLMEFVYDAS 114
                 5679*******************8766554 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.8e-05      0.19      23      78 ..      87     143 ..      70     154 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 9.8e-05
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHHS-S-EEEEEETT..-HHHHHHHHHHT-E CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiaergktvllvvvas..NtpsirlyeklGfe 78 
                 +l  l v+++ r +G g++l +   ++ + r + +++++ ++  N++++ ly+k+G +
  CCD23895.1  87 FLHDLFVQEDQRVKGVGRKLMEF-VYDASDRMDVPFVYWTTDdfNHRAQLLYTKVGKK 143
                 577899**************875.577899*********998667999******9955 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00019      0.38       2     112 ..       9     124 ..       8     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00019
                     EEEE-GGGHHHHHHHHHH...HTT----H......HHHHHHHHHHTTSEEEEEEE....TTEEEEEEEEEEE..EEEETTEEEEEEEEEEEEE-C CS
  Acetyltransf_9   2 irelteedldevlellky...aFqdeespl....eeireyfrklleesrvlgaed....ngelvgqlallpl..elnvpGktlkaagvtgVavap 83 
                     ir+++e+d d++l l+k+   ++++++++       +++++++ ++    + a+      ++ +g++++l +  ++n+ Gk++    + +  v  
      CCD23895.1   9 IRPIQETDKDDWLLLWKQyqkCYNRTMKEDipllT-FERFLDPEVKM---WAAFAinttTNKPIGMVTYLHHftTWNLDGKIF----LHDLFVQE 95 
                     899999******99997523377788777565322.33444444444...333333356999999999988645889999987....5688999* PP

                     CGTTS-HHHHHHHHHHHHHHHTT--EEEE CS
  Acetyltransf_9  84 ehrgrgvlskLlaraleemreegqplsll 112
                     ++r +gv +kL++ +++  + +++p+++ 
      CCD23895.1  96 DQRVKGVGRKLMEFVYDASDRMDVPFVYW 124
                     ********************999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1196.75
//
Query:       CCD23896.1  [L=663]
Description: hypothetical protein NDAI_0C02360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-29  101.7   0.2    2.3e-29  101.7   0.2    3.0  3  NOC3p     Nucleolar complex-associated protein
    1.2e-24   87.3   0.2    4.1e-24   85.5   0.2    2.0  1  CBF       CBF/Mak21 family
  ------ inclusion threshold ------
        1.8    8.0   5.1        1.4    8.4   0.3    2.6  2  Z1        Z1 domain


Domain annotation for each model (and alignments):
>> NOC3p  Nucleolar complex-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.3         3   1.8e+04      69      88 ..       7      26 ..       3      27 .. 0.68
   2 !  101.7   0.2   3.9e-33   2.3e-29       2      94 .]     137     227 ..     136     227 .. 0.98
   3 ?   -2.3   1.5       1.1   6.3e+03      68      77 ..     371     380 ..     311     396 .. 0.61

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 3
       NOC3p 69 keekvskevkklrefEqkLl 88
                 +e + + ++k r+ E++Ll
  CCD23896.1  7 SQEAILERTNKKRRQEDALL 26
                45566677788888888887 PP

  == domain 2  score: 101.7 bits;  conditional E-value: 3.9e-33
       NOC3p   2 akeeiaslassiledPeenlsllkrllklaeskdsavtvrklallsllaVfkDiiPgYrIrsltekekeekvskevkklrefEqkLlkvYkky 94 
                  ke+ia+l+++i+edPeen+ +l+rl+k+a s++  +++ k+++l+l+ Vf  iiPgYrIr+lt+ ek+ek+skev+klr+fEq+L+++Yk+y
  CCD23896.1 137 LKEDIADLVEKIMEDPEENTMALTRLCKMAGSRN--PNTAKFSILALVPVFNSIIPGYRIRPLTDLEKKEKISKEVAKLRTFEQNLVQNYKSY 227
                 69********************************..*******************************************************99 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.1
       NOC3p  68 ekeekvskev 77 
                 +k+ k+ ke+
  CCD23896.1 371 KKQRKMRKEM 380
                 2222333333 PP

>> CBF  CBF/Mak21 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.2   6.8e-28   4.1e-24       2     168 ..     473     649 ..     472     651 .. 0.91

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 6.8e-28
         CBF   2 vqaLvllfqllskqkqsel....lsasdRFyraLYrkLld..........................pelltsskralllnlly......kalkadkpvk 64 
                 ++++v +f+++s++ ++ +    l++   F  aLY+ L                            p+++ s+k +lll++l+      k+     + +
  CCD23896.1 473 LLCIVSAFSIVSNN-SNMKisidLTT---FADALYSILPYvsldadielsykslrladplnneiikPSVNVSTKAELLLKALDhvffrsKSG----SKQ 563
                 689**********6.33336778888...*********77*******************************************777766555....*** PP

         CBF  65 rvaAFvKRllqlalhappsfalgllallsellkhppklkalleekfkdvkeeeeeekkeekkkskaesgvYdptkrdpeysnaeasslwElsllakhfh 163
                 r+aA +KRl++++ h+p++++++ll ++ +l+++ p+l  l++      +e+     +      +a +g+++++ + +++sn++a++lwE ++l+kh++
  CCD23896.1 564 RAAAYTKRLYTCMQHTPEKTTIALLKFIDKLMNKYPELCGLYS------TED-----R------IA-NGNFNMETDVVSRSNPDAATLWEHTILTKHYC 644
                 *********************************8889999999......777.....5......66.9*****8899********************** PP

         CBF 164 PtVal 168
                 PtV +
  CCD23896.1 645 PTVVK 649
                 ***76 PP

>> Z1  Z1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.7     0.061   3.6e+02      52     106 ..      94     148 ..      15     174 .. 0.67
   2 ?    8.4   0.3   0.00023       1.4      30     116 ..     367     490 ..     363     504 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.061
          Z1  52 elkkelkesaeekkeellkeleklwekektstkseeeelsfeevkeelkealeki 106
                 ++kk+  ++++e++ e+ ++     +++++s+++e++e ++ e+ke++ + +eki
  CCD23896.1  94 QTKKKDIHQQKETNLEINEQPDAELDESQSSDEEEDTEERIIELKEDIADLVEKI 148
                 2221111111222222222222223332333445555555556666666666555 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00023
          Z1  30 vhvsrfkdeqekvaelieelleelkkelkes.aeekkeellkeleklweke..kts...................................tkseeeel 90 
                 vh s+++++ +k  ++ie+ +e+ ++ ++++ +e++++++lk +  l+ +   + +                                   +++e ++l
  CCD23896.1 367 VHLSKKQRKMRKEMKEIEKEMEQAEQVVSAEeREKNQSQILKSVLALYLNIlrN-KsvkligpvleglakfgnmanfdllgdflvimkeiiNDTELDSL 464
                 8**********************9999988866777888888888888887532.25678999999999999999999999999999999988999999 PP

          Z1  91 sfeevkeelkealekievvvvNsskk 116
                 s eev++ l  +++++++v+ Ns+ k
  CCD23896.1 465 SPEEVRKVLLCIVSAFSIVSNNSNMK 490
                 99999999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2851  (0.159016); expected 358.6 (0.02)
Passed bias filter:                      884  (0.0493056); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.48
# Mc/sec: 4117.17
//
Query:       CCD23897.1  [L=639]
Description: hypothetical protein NDAI_0C02370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-72  243.7   4.6    1.6e-72  243.7   4.6    2.0  2  Candida_ALS_N  Cell-wall agglutinin N-terminal ligand-sugar b
      0.006   16.7   0.0      0.026   14.7   0.0    2.0  1  Big_8          Bacterial Ig domain
  ------ inclusion threshold ------
       0.15   12.1   6.1       0.28   11.2   6.1    1.4  1  DUF4674        Domain of unknown function (DUF4674)


Domain annotation for each model (and alignments):
>> Candida_ALS_N  Cell-wall agglutinin N-terminal ligand-sugar binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.7   4.6   2.7e-76   1.6e-72       1     249 []      49     298 ..      49     298 .. 0.96
   2 ?   -2.8   3.2      0.49   2.9e+03     132     200 ..     475     545 ..     443     587 .. 0.66

  Alignments for each domain:
  == domain 1  score: 243.7 bits;  conditional E-value: 2.7e-76
  Candida_ALS_N   1 swki.dgskvskgDtFtLempcVfkfkt..setsvdLkdadgttyatCtl.qsgeylveeSelkCtvssalssstsasGtisfplvFnaGgsassv 92 
                    +++i d+s++ kgD+F+++mp+V+++k+  ++++ d +  dgt++++Ct+ q+++y  e S l+Ct+s++lss++s+sG+i+++l+F++G+sa+++
     CCD23897.1  49 DFSIpDSSSIIKGDEFSISMPYVYRIKFsdNSKYYDVSLNDGTKAFQCTAlQQASYDKEASILTCTASTDLSSYSSISGSIDIGLSFSSGDSAYQY 144
                    699*************************8855555555557******************************************************* PP

  Candida_ALS_N  93 dleaakcFkaGtntvtfsdgdkklsttvnfeageestsadklvysarrtpslnklqsyllagnCpngyss.gtlgi..tiknsgakidCssvqvki 185
                    +l++a +Fk+Gt++v + ++   ls+ ++f+a+++        ys+ r++++++l++y+la++Cpngy   gt +i  +++ sg+++dCssvqv+ 
     CCD23897.1 145 ELANAAYFKSGTMDVPLMND---LSAPITFDAASFP----LGSYSMARSTTKDSLENYYLAMKCPNGYLLgGTENInfDTNGSGHDVDCSSVQVYK 233
                    *******************8...**********887....89****************************988888889999************** PP

  Candida_ALS_N 186 tnklNdWllPksaeslsytvsCssnsltityknipagyrpfidalqsvpsgss.ikvkytnkytC 249
                    ++k+NdW++P+++e++s++v C +++l+it++++ +g++++++alqs+++g + i+  ++ +y+C
     CCD23897.1 234 SSKFNDWFFPEDYEDASADVVCYGSNLMITMGQASPGEMLWVNALQSLEEGVNtIDQYIELTYSC 298
                    *****************************************************9**********9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.49
  Candida_ALS_N 132 dklvysarrtpslnklqsyllagnCpngyss..gtlgitiknsgakidCssvqvkitnklNdWllPksaes 200
                     ++v+ + ++++  + ++  + ++C+ g ++  +t ++ ++n+ ++++ ss++ + t  l +  + ++ ++
     CCD23897.1 475 PTTVFPNTIITKTYSNTTTSILTSCSGGCTEtgNTASFPSTNTVQSLSLSSTTSSNTPPLKETTVVTTVSN 545
                    56777777888888888888889999999887445566777777777777777776666655555555555 PP

>> Big_8  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.3e-06     0.026      10      92 ..      46     135 ..      39     139 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.3e-06
       Big_8  10 lkadfsv..gksvkeGDyftitlpdnlkfngistsektfdikdsngn......viakakvdpgtgtirytFTdyvenkenvkgklelgayf 92 
                  k+dfs+  ++s+ +GD f i +p  +++ + s+++k  d+  ++g+       + +a++d+++  +++t     +++++++g++++g++f
  CCD23897.1  46 AKFDFSIpdSSSIIKGDEFSISMPYVYRI-KFSDNSKYYDVSLNDGTkafqctALQQASYDKEASILTCTASTDLSSYSSISGSIDIGLSF 135
                 467777777888*************9999.5566666666655455401111155666679999999*******************99988 PP

>> DUF4674  Domain of unknown function (DUF4674)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   6.1   4.8e-05      0.28      47     153 ..     467     582 ..     459     597 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.8e-05
     DUF4674  47 llkreaknkklsfketkilkkyknsksvLlitCk.vCnkttk.hkgksrsflaplkskeetpksksslktkkkktksskkktktsvsksnskgks.... 139
                 +++ e ++ +  f +t i k y+n +  +l  C+  C  t    ++ s++++++l+ +++t+ +   lk++   t  s ++t+t++s+s+s+ ++    
  CCD23897.1 467 IIHVETPSPTTVFPNTIITKTYSNTTTSILTSCSgGCTETGNtASFPSTNTVQSLSLSSTTSSNTPPLKETTVVTTVS-NITPTESSPSSSPFNEttti 564
                 77788899999999*******************84598876515799*********9999999999999988877666.56889999999999995444 PP

     DUF4674 140 ....paltfrspssgqst 153
                      a + +  +s++s+
  CCD23897.1 565 tsvpVASNSKVTTSSPSS 582
                 444334455555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       874  (0.0487478); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4393.94
//
Query:       CCD23898.1  [L=291]
Description: hypothetical protein NDAI_0C02380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-18   66.0  11.3    1.3e-17   64.0  11.3    1.9  1  CMS1           U3-containing 90S pre-ribosomal complex subuni
  ------ inclusion threshold ------
      0.054   13.1   6.5      0.071   12.7   1.0    2.4  2  Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (


Domain annotation for each model (and alignments):
>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0  11.3   1.4e-21   1.3e-17      10     227 ..      64     271 ..      53     288 .. 0.75

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 1.4e-21
        CMS1  10 aenkekgkkkksekkRskkkerkkgklketqDvkaglteavalqdpelLadylaqklkriekDlsdveLeDkyisasaikDttsftk.Prtldnlpdyl 107
                  ++k+ +k++k + k sk +++kk +++          +++ l + el+ +y a  ++  + Dls +eL+D+y ++  +  t+ f    r+l n+p +l
  CCD23898.1  64 GDDKHISKRQK-KLKNSKLHQKKKEQVAYQIQ----QLKSLPLGSSELIIEYFATLIREKNPDLSALELNDLYFKKTDFISTAKFDSmDRNLVNFPTFL 157
                 33556677777.77888888888888853322....2568999******************************************75278888888888 PP

        CMS1 108 eelsefakklvksaksngsPelLvltlaalRaaDlaralkklqtkdskvakLFakhikleesvtyl......kksr....igiavGtpgRildLl.eee 195
                  ++s+             sP++++l+++ lR+aD+ r++   +       kLFak  kl++++ ++      kk++    +   v tp R+l++l  +e
  CCD23898.1 158 AQFSK-------------SPKTVILSMSNLRVADVCRSVGGSK----MAIKLFAKN-KLKDDIETVenifkdKKNKknqnLKYFVATPTRMLNILeATE 238
                 87765.............6899****************97543....456999996.8888887764444443444122256789**********7678 PP

        CMS1 196 slsv.deLkrivlDasfvDkknrgildiretrk 227
                 +l   ++   i++Das+ D k+++il  ++t  
  CCD23898.1 239 VLFQgKDKLDIIIDASYLDMKKNSILSNENTAV 271
                 7754145558****************8877753 PP

>> Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.5    0.0078        70      43      74 ..      66      99 ..      58     117 .. 0.72
   2 ?   12.7   1.0   7.9e-06     0.071      39     100 ..     195     255 ..     187     288 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.0078
                   HHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHCC CS
  Mt_ATP-synt_B 43 dkriekiqeelnqsrnlk..eealkerieqekkl 74
                   dk i+k q++l+ s+  +  +e++ + i+q k+l
     CCD23898.1 66 DKHISKRQKKLKNSKLHQkkKEQVAYQIQQLKSL 99
                   7889999999998865442267777777776655 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.9e-06
                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHH CS
  Mt_ATP-synt_B  39 kefldkriekiqeelnqsrnlkeealkerieqekklqslveltkslfevskeqvaleaeafe 100
                    k  l+++ie++++++++ +n+k + lk+ +   + + +++e t++lf+  k+++ +++ a +
     CCD23898.1 195 KNKLKDDIETVENIFKDKKNKKNQNLKYFVATPTRMLNILEATEVLFQG-KDKLDIIIDASY 255
                    567899*****************************************95.444555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1564  (0.087233); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2359.50
//
Query:       CCD23899.1  [L=349]
Description: hypothetical protein NDAI_0C02390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.4e-57  192.2   0.1    1.1e-56  191.8   0.1    1.2  1  SMC_Nse1      Nse1 non-SMC component of SMC5-6 complex
      7e-14   51.9   8.0    1.3e-13   51.0   8.0    1.5  1  zf-RING-like  RING-like domain
  ------ inclusion threshold ------
      0.077   13.1   0.0        1.6    8.9   0.0    2.2  2  DUF2161       Putative PD-(D/E)XK phosphodiesterase (DUF2161)


Domain annotation for each model (and alignments):
>> SMC_Nse1  Nse1 non-SMC component of SMC5-6 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.8   0.1   1.9e-60   1.1e-56       2     194 .]      23     268 ..      22     268 .. 0.88

  Alignments for each domain:
  == domain 1  score: 191.8 bits;  conditional E-value: 1.9e-60
    SMC_Nse1   2 ralLQall.argilteeelkkvlaailsaeeevsp...editqedleeyiakinealspldyeirsvrhqlg............k.............. 70 
                 r+lLQ++l arg+++e++l  +l++++  +++++p    +++   l+++++kin++l+pl y+i++++h++g                           
  CCD23899.1  23 RYLLQYILsARGVCHENALVLALMRLKVDSNTIDPqwtISDWLTCLNDHVNKINVKLNPLSYKIIRINHGIGknivsnknrqnfGlfetattmsnrsdv 121
                 9*************************7666777777779*********************************666666665555055555566666666 PP

    SMC_Nse1  71 ..............ervyyalVNttsdeetklATtfsaeeiafiKrlldamfet.sntrrlevmaitesqavvlelarilaaaraerr........... 143
                               ++++y +VN+ts+e+tklAT+fs++ei+f+K++l++++e+ + +++++  ++ +s+ +++e++ri++ a+ +++           
  CCD23899.1 122 dqdengnshvilpeSNRFYLYVNLTSSEQTKLATRFSQKEIEFVKWALQKFCEEgNIVKDIGSLSTPSSNLIISEVHRIITGATGNNNllrwsryvsft 220
                 66777777777788****************************************9999********************999998555567779999999 PP

    SMC_Nse1 144 ..stelsqeeaaadkgLtaseaeklLkrLveegWleksreGfysLdlRallEL 194
                   st+l q+e     ++ta e e++L +L+e++W++++++G+y++dlR+l+EL
  CCD23899.1 221 vgSTQLLQYE-----HFTAIELESILIKLCEYKWFYRTSQGEYGMDLRCLAEL 268
                 9988888873.....6************************************8 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   8.0   2.1e-17   1.3e-13       1      43 []     281     337 ..     281     337 .. 0.99

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 2.1e-17
  zf-RING-like   1 CeaCkeivtqGvrCsnesCn...............vrlHvdCfqhyirthsskkCpkC 43 
                   C++C++i++qGv C++++C                +++H+dCfqhyi +h+sk+C+ C
    CCD23899.1 281 CQNCDKIAVQGVICGSQHCLpsddrsqlgevptelRIWHIDCFQHYI-SHVSKECDVC 337
                   ***********************************************.*********9 PP

>> DUF2161  Putative PD-(D/E)XK phosphodiesterase (DUF2161)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.045   2.7e+02      27      67 ..     128     168 ..     109     191 .. 0.77
   2 ?    8.9   0.0   0.00027       1.6      94     109 ..     245     260 ..     220     263 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.045
     DUF2161  27 krsrllkEferregdpnvGGstrkkivTaYreqalriaalL 67 
                   + +l E +r +   n   s ++k+ T + ++ ++  ++ 
  CCD23899.1 128 NSHVILPESNRFYLYVNLTSSEQTKLATRFSQKEIEFVKWA 168
                 45678889999999999999*************99866543 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00027
     DUF2161  94 nyYgWFerverGvYrl 109
                   Y+WF+r+++G Y++
  CCD23899.1 245 CEYKWFYRTSQGEYGM 260
                 46************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2759.40
//
Query:       CCD23900.1  [L=198]
Description: hypothetical protein NDAI_0C02400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-32  111.0   3.8    2.3e-32  111.0   3.8    2.0  2  Ribosomal_L24e  Ribosomal protein L24e
  ------ inclusion threshold ------
        2.8    7.3   9.9          3    7.2   9.2    1.4  1  DUF3629         Protein of unknown function (DUF3629)


Domain annotation for each model (and alignments):
>> Ribosomal_L24e  Ribosomal protein L24e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   3.8   2.6e-36   2.3e-32       1      64 [.       1      64 [.       1      66 [. 0.98
   2 ?   -2.1   0.3      0.53   4.7e+03      41      50 ..     188     197 ..     180     198 .] 0.71

  Alignments for each domain:
  == domain 1  score: 111.0 bits;  conditional E-value: 2.6e-36
                    XXX-B-TTT-SB--SS--EEEE-TTS-EEEESSHHHHHHHHTT--GGGSTTSTTT-XXXXXXXX CS
  Ribosomal_L24e  1 mktekCsFsgykiyPGhGkrfvrnDgkvfrFlssKceklfkqkrnPrklkWTkayRrahkkelt 64
                    m++ +C+F+++++yPGhG++fvrnD+k frF++sKc+k fkq+rnPrklkWTka+R+a++kel+
      CCD23900.1  1 MRIYQCHFCSSPVYPGHGIMFVRNDAKEFRFCRSKCHKSFKQRRNPRKLKWTKAFRKAAGKELA 64
                    9************************************************************987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.53
                     HTT--GGGST CS
  Ribosomal_L24e  41 kqkrnPrklk 50 
                     ++krn +k++
      CCD23900.1 188 NKKRNSKKIA 197
                     5788888886 PP

>> DUF3629  Protein of unknown function (DUF3629)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.2   0.00033         3     108     183 ..      90     166 ..      67     197 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00033
     DUF3629 108 nevisaldkvrrieerlkiqnkmralmdeqhmkderiqeendrvir.kevlvereparkqtsqeyspvrnretckpv 183
                  +++s ++ +r+  er   +n+mr   +++ ++d+++ e n  ++r +ev +  + a+ q+ +e     + e +  +
  CCD23900.1  90 LKAMSRVEEIRQKRERAFYKNRMRGNKEKDFLRDKKLVESNPELLRiREVEIANKLAKEQARAEMGSEEDEEVSEEE 166
                 4456677778888899999***********************9999689************9999877777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2206  (0.123041); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1495.07
//
Query:       CCD23901.1  [L=158]
Description: hypothetical protein NDAI_0C02410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1226.26
//
Query:       CCD23902.1  [L=216]
Description: hypothetical protein NDAI_0C02420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-46  156.9   1.1    4.7e-46  156.7   1.1    1.0  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.7   1.1   2.6e-50   4.7e-46       1     189 [.      16     197 ..      16     198 .. 0.96

  Alignments for each domain:
  == domain 1  score: 156.7 bits;  conditional E-value: 2.6e-50
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 v+ Gt+++++++kdgv+l+ad+r+t+g++++++ t +K+ k++d+i+++ +G+aaD+++++++++++++ y+ ++g+p +        aa + ++++++
  CCD23902.1  16 VSLGTSIMAVTFKDGVILGADSRTTTGAYIANRVT-DKLTKVHDKIWCCRSGSAADTQAVADIVQYHLDIYSTQFGTPSTKT------AASVFKTLCYE 107
                 578***************************88886.****************************************987766......*********** PP

                 TTTTTSEEEEEEEEE.TTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEE CS
  Proteasome 100 grrpfgvslliagvd.eeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievav 189
                 ++ ++ +++++ag+d  +++ e+y++   Gs++++k ++ +Gsgs++++++++k++k+d+t++e+v++++++l++a++ d +sg+ i+++v
  CCD23902.1 108 NKDNLTAGIIVAGFDdATNKGEVYSVPLGGSIHKQK-YAIAGSGSTFIYGYCDKNFKDDMTKDETVHFIKHSLSQAIKWDGSSGGVIRMVV 197
                 ***************77899***************8.**************************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1570.90
//
Query:       CCD23903.1  [L=1060]
Description: hypothetical protein NDAI_0C02430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-22   79.8  71.8    1.7e-22   79.7  45.2    3.1  3  Sfi1       Sfi1 spindle body protein
    1.2e-20   74.2   2.2    1.2e-20   74.2   2.2    4.3  6  Sfi1_C     Spindle body associated protein C-terminus
  ------ inclusion threshold ------
      0.017   15.2   0.1       0.05   13.7   0.1    1.8  1  IL17R_D_N  N-terminus of interleukin 17 receptor D


Domain annotation for each model (and alignments):
>> Sfi1  Sfi1 spindle body protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   8.5   0.00042       2.5     277     375 ..     275     369 ..     257     375 .. 0.81
   2 !    3.4   5.1    0.0036        22      76     398 ..     380     447 ..     372     455 .. 0.54
   3 !   79.7  45.2   2.9e-26   1.7e-22     122     569 ..     456     898 ..     436     899 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00042
        Sfi1 277 lealykWvleeRlrlfqrireqrlkrevlstlvtntretrtrllqaeeeaeehrkekllrsvlekwrek.laeqrereeeAsefyaprlaqecldawke 374
                 +  l+  +l ++l+  ++++++++kr+ l+ +++ +++ + +l+     +e + +e+l ++ ++ w+ k +++++ +++ A +f+++r + +++d w++
  CCD23903.1 275 IFILNPSTLLTKLAHWEYNKDENIKRNFLKFWLQTVNK-KLKLQY----LEIRWNEYLKTKWFNFWNFKyTQDIEMISKDAIKFDNERQLIKAWDLWER 368
                 5555666788999***********************99.555544....556789999********96626778999********************98 PP

        Sfi1 375 r 375
                 +
  CCD23903.1 369 K 369
                 7 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.0036
        Sfi1  76 aqrfalkkplkkWkartkeieereekavqvykqkllkrsywkwfwefkerraekwrderlkrrsllkWlrklrenrereqeaeakrkrlllqkalqiws 174
                 a +++l++++++ k+   +i++++ek v ++++ l+k + ++w    + +r++k  d++l ++ l+ + r                             
  CCD23903.1 380 ANKYFLEHVFNRTKRNFVRIKQLKEKSVNFHNKLLKKDVIRTW----QLKRIQKTFDKKLNENRLNCMFR----------------------------- 445
                 4566667777777777777777777777777777777666555....33333333333333333333333............................. PP

        Sfi1 175 erseevqaaeaeadsllrqkllrrvleewrkqarlepalrqvsakkdtrllksalesWkkrlemsrqarevdrtrllrnaltsWndelrlkalreride 273
                                                                                                                    
  CCD23903.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

        Sfi1 274 rillealykWvleeRlrlfqrireqrlkrevlstlvtntretrtrllqaeeeaeehrkekllrsvlekwreklaeqrereeeAsefyaprlaqecldaw 372
                                                                                                                    
  CCD23903.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

        Sfi1 373 kerlqhvqklekwakdarfyflatka 398
                                         k 
  CCD23903.1 446 ------------------------KI 447
                 ........................33 PP

  == domain 3  score: 79.7 bits;  conditional E-value: 2.9e-26
        Sfi1 122 fkerraekwrderlkrrsllkWlrklrenrereqeaeakrkrlllqkalqiwserseevqaaeaeadsllrqkllrrvlee.wrkqarlepalrqvsak 219
                  k+ ra+  + +    ++l+ W++++++ + + +e+ ++++r+++q  ++ + + + + +++e+  +++l++ ll  ++++ wr++ +       + + 
  CCD23903.1 456 IKKERATVTNIFFQRSHYLKIWTSNTEKSQIKINELVSLENRFIKQTKMNNL-KNIMKRKKQEYITKEKLDDILLCFIFNHiWRRRYTENVDCLTLLNI 553
                 46677777777888899***********************************.777888999************************************* PP

        Sfi1 220 kdtrllksalesWkkrlemsrqarevdrtrllrnaltsWndelrlkalreriderillealykWvleeRlrlfqrireqrlkrevlstlvtntretrtr 318
                  +++llk++l  Wk++l    +a e+ r++   +  ++W+ + rl  l+++++ ++ ++ +  W    +  ++++ +++  k+ vl++ +++++e+  r
  CCD23903.1 554 NEKKLLKRTLTFWKQNLHLRLKADEMFRKNNYLQYIKKWKIQSRLAHLESEKNRKLFIDKFGLW---HKKLSVNKQYRKYFKTVVLRRGLKKWTESIHR 649
                 ****************************************************************...55555666667789999999999999999999 PP

        Sfi1 319 llqaeeeaeehrkekllrsvlekwreklaeqrereeeAsefyaprlaqecldawkerlqhvqklekwakdarfyflatkaLkk....WrkateesrreR 413
                  ++  ++a + +k+kl+ ++++kw ++ + + e +e+A+ f++ ++    + ++k+  qh+++ +  +++    f+ +++L+k    Wr+   e+ + R
  CCD23903.1 650 TKRLNSKAIAYNKNKLQLRYFRKWLQSKQGIIENDEKARLFHKLKI----ILKIKKCIQHIKNVKILSDKIGSSFVRNRCLQKyyslWREKRYENYKAR 744
                 *****************************************98765....66789999999999888999999998888887655559*********** PP

        Sfi1 414 rrdayaqvrrkvkinLaskalnaWrskaa.evaalsqqaeqleqeklleaaielldkWrektlerkkraeeadelyaeqllekalarwkerlrelqele 511
                 +     +++     ++ sk+++ W +++    ++   + ++ ++  l + a++l    +e+++e  +      +++  +l  k + rw+++l+ l +l+
  CCD23903.1 745 LISLGKRYENHLHSKIKSKYFTIWGQQYRlYTVECGIRGQESRNLFLKKFAMRL---IKEQMIEKENLSIMSLQYDISRLKIKVFLRWHNHLSYLVKLN 840
                 ************************999886555555555555555444554455...55666555677777789999********************** PP

        Sfi1 512 eqAeqveaekqlsiasaaLkklslrlfqikskeetAealrernerkhvRnmlrhWlqr 569
                 e A+++ +e +   ++   k++s+++++i+ +ee++ ++r r++r++vR+++  W+++
  CCD23903.1 841 EIANDKINEDNIHLLQDYTKNWSMKFMRIQKNEESVPTFRKRWDRATVRGIFMLWKNK 898
                 ********************************************************98 PP

>> Sfi1_C  Spindle body associated protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.81   4.8e+03      71     101 ..     295     324 ..     278     326 .. 0.71
   2 ?   -2.1   0.9       1.1   6.5e+03      85      97 ..     425     437 ..     397     470 .. 0.52
   3 ?   -2.2   0.2       1.2   7.2e+03      26      42 ..     499     515 ..     483     520 .. 0.83
   4 ?   -3.7   0.2         3   1.8e+04      79      91 ..     618     630 ..     585     666 .. 0.61
   5 ?   -2.7   0.2       1.7     1e+04      60      98 ..     641     681 ..     629     687 .. 0.63
   6 !   74.2   2.2     2e-24   1.2e-20       5      75 ..     915     985 ..     911    1012 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.81
      Sfi1_C  71 akeskakeppklslerinkklaskvkeidFe 101
                   e+ +++  k+ l+ +nkkl+ +  ei+++
  CCD23903.1 295 D-ENIKRNFLKFWLQTVNKKLKLQYLEIRWN 324
                 3.33334688999999*****9999999987 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.1
      Sfi1_C  85 erinkklaskvke 97 
                 +ri+k +++k +e
  CCD23903.1 425 KRIQKTFDKKLNE 437
                 4444444443332 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.2
      Sfi1_C  26 vkknkleaiksrysrar 42 
                 +k+ k++ +k+  +r +
  CCD23903.1 499 IKQTKMNNLKNIMKRKK 515
                 78999999998887766 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 3
      Sfi1_C  79 ppklslerinkkl 91 
                  +kls++++++k+
  CCD23903.1 618 HKKLSVNKQYRKY 630
                 4444444444444 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 1.7
      Sfi1_C  60 Kkklekeektaakeskake..ppklslerinkklaskvkei 98 
                 Kk  e+ ++t+  +ska     +kl+l+   k l+sk   i
  CCD23903.1 641 KKWTESIHRTKRLNSKAIAynKNKLQLRYFRKWLQSKQGII 681
                 55555554444444443323378888888888888887655 PP

  == domain 6  score: 74.2 bits;  conditional E-value: 2e-24
      Sfi1_C   5 elktPlkskksaavtiPGServkknkleaiksrysrarraiPSPiKsssvldstvKkklekeektaakesk 75 
                 ++ktP ks   +++tiPGSer+k  k+ a+ ++ys+arraiPSP+K+ss+l+ +++kk+e ++ +  + s+
  CCD23903.1 915 NFKTPRKSIMGTSSTIPGSERMKDSKMKAMMNHYSKARRAIPSPLKTSSSLNLSARKKIEGRSWEGRSPSP 985
                 79*********************************************************988776655555 PP

>> IL17R_D_N  N-terminus of interleukin 17 receptor D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   8.4e-06      0.05      47      96 ..     215     266 ..     209     274 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.4e-06
   IL17R_D_N  47 vvvlwtasalGieylkGfr..vileelksegkqcqqlvlkdPkqlnfsfkev 96 
                 + v+ + +++ +e+lk fr  ++l e+++e++   q+vl+  ++l+ s++ +
  CCD23903.1 215 IQVFLIRNKISLEFLKIFRnyIYLLEKNNENPENDQFVLRLQNELSRSYRLT 266
                 5688899***********9666789************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1060 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1406  (0.0784204); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 7230.47
//
Query:       CCD23904.1  [L=478]
Description: hypothetical protein NDAI_0C02440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     1e-120  404.0   2.9   1.1e-120  403.8   2.9    1.0  1  Ribophorin_I  Ribophorin I


Domain annotation for each model (and alignments):
>> Ribophorin_I  Ribophorin I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  403.8   2.9  6.4e-125  1.1e-120       1     440 [.      32     470 ..      32     471 .. 0.94

  Alignments for each domain:
  == domain 1  score: 403.8 bits;  conditional E-value: 6.4e-125
                   -EEEEEEEEEE-SSSS-EEEEEEEEE--SSS----EEEEE-TTTTTSEEEEEEE-SS..S........EE---------------EEEEEE-SS--- CS
  Ribophorin_I   1 lenenvertidlkksyvketikitvkntgsepvseyylalpkeeaeklslleaslkdkkkkkktk.kveaelkdtskeedlesdvqvyevkLpkple 96 
                   +en ++ r id++ksy  e ++i +kn+g e+v+eyy+alp ++  k+s+++a +++++       + ++  ++t+  e++++ v +  +++p+p++
    CCD23904.1  32 WENIDYRRAIDVSKSYLSERVEIRAKNVGPESVTEYYFALPRNSLGKVSMFTAVIQGTDT----YlNCQLFPNVTRL-EETGEYVGYGVINFPSPIQ 123
                   99***************************************************9987544....3355555566654.45678999*********** PP

                   SS-EEEEEEEEEES---EESSSB--TTS-EEEEEEEESS---SS-E.CE-EEEEESSS-EEESS..........CCC-..ETTEEEE---EEE-SS- CS
  Ribophorin_I  97 pgekvtlevsyvlthalrPlPaeikqaekQlllfktsayvlspYktkkqktkvklpsskiesytkle.......epek..sgstltyGpfenvapfs 184
                   p++++++   ++++ a  P+P+ i+++++Q+ll+kt+++++s+Y+t  ++t    +ss++e+++ ++        +    +++ + +Gp+++++pf+
    CCD23904.1 124 PEQEFSFITALYYNVAGVPYPEYIAISDEQSLLLKTNRFPISAYPT-VESTLTIGGSSSFEELNAPDdaylkgkTN-VppNEEAIFFGPWDDIKPFE 218
                   **********************************************.99999999*******99988999987533.2589999************* PP

                   -S-.EEEEEEE-S--EEEEEEEEEEEEETTTTEEEEEEEEEEEE-S-B-TT---HHHHHH.HHHCS.--SS-SSBS-EEEE--SS----EEE-SSSB CS
  Ribophorin_I 185 lsp.vsvhyennkplltveklerdievShwggniaveeeyelrNdGAklkgsFsRldyqkseyeknksnkpssalksleaklpagakdvyytDeiGn 280
                   +++ v+v +++n pl +v+ l+rdi+vS+w+++++++e+yel+N+GAkl+++FsR++y++++++  ++ ++s++l  +e+ lp++ + +yy D +G 
    CCD23904.1 219 KEQdVEVVFNHNLPLNEVTLLKRDIWVSQWASTLEFKEYYELKNKGAKLDKGFSRINYMRDQQQ--ADMRKSHYLAIIEMLLPENPFGHYYNDLVGL 313
                   7777*******************************************************86554..67789************************** PP

                   ---EEEETT...E...EEE--SS-B-TT-EEEEEEEEEEEGGGTEEE-T..TTEEEEEEES----SSEEECEEEEEEEE-TT-EEEEEE-SS--SEE CS
  Ribophorin_I 281 vstsrlrenekkketelelkPRfPlfGGWkysFtigynlplseflrkek..gdkyvlkvpllesikdvvveevelriiLPegAenvkvsspfpvess 375
                   vst +++en      +  lkPRfP+fGGW+y+Ftig++++ls+fl+k++  +d y+l+vpll+++ d+v++ ve +++ PegA+  ++++p+p+ + 
    CCD23904.1 314 VSTAKIQEN------HYFLKPRFPIFGGWNYNFTIGWTNQLSDFLHKSNddSDMYLLSVPLLNGPSDTVYDTVEYSVYVPEGAKIADIDTPIPFVNL 404
                   *********......389****************************99999999******************************************* PP

                   EEEEE--TT--.S-EEEEEEEE-SEETTTS--EEEEEEE--HHHHTCHHHHHHHHHHHHHHHHHHC CS
  Ribophorin_I 376 evslhktyLDt.tgRpvvtlkkknlvdeeheqkvlvkYdypklallrkpllialavfllfllaivl 440
                   +v+ +k+yLD+ +g+  v++++knlv+e   +k+l+kY+y+k a+++kpl ia+++f++++++++l
    CCD23904.1 405 SVKAEKSYLDLkKGHVRVKITFKNLVNEIAGAKILIKYQYTKNAFIQKPLSIAIYIFIALMFIFLL 470
                   ***************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3813.51
//
Query:       CCD23905.1  [L=645]
Description: hypothetical protein NDAI_0C02450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-20   72.8   0.3    1.5e-19   70.4   0.0    2.2  2  ORC_WH_C  Origin recognition complex winged helix C-terminal
    3.3e-05   23.1   6.1    0.00014   21.1   6.1    1.9  1  ORC3_N    Origin recognition complex (ORC) subunit 3 N-termin


Domain annotation for each model (and alignments):
>> ORC_WH_C  Origin recognition complex winged helix C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.16   1.4e+03      82      96 ..     165     179 ..     107     198 .. 0.66
   2 !   70.4   0.0   1.7e-23   1.5e-19      12     140 .]     512     642 ..     501     642 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.16
    ORC_WH_C  82 eeeaekkkkkkekee 96 
                 ++e++ k+++ke +e
  CCD23905.1 165 SKEDQLKQEDKEMNE 179
                 112222222222222 PP

  == domain 2  score: 70.4 bits;  conditional E-value: 1.7e-23
    ORC_WH_C  12 edylrcal..........eeee..eeeeslaslpdtsilyklyleagrliNvyDwyeaFkqvlekereedkeseaeeeekakeeeaekkkkkkekeede 98 
                 e++l +            e+ e   ++ ++   p t +l+kly+ea+++iN+yD+y aFk+++++++ +d   e ++          ++++ ++  +++
  CCD23905.1 512 ERVLPPPHsslaegeemtER-EtiVSSLEKLVGPITGQLFKLYREANSTINIYDFYRAFKSTMPEKEIMDFVIEYSK----------DDESLSRFIDTD 599
                 55555555445544444322.135677889999***********************************988765544..........456678888889 PP

    ORC_WH_C  99 edeeewekelqarFiralheLellGliketgrka.dhvaklvw 140
                 e++ + ek ++++F++a+ +++++Glike++ k+ ++v+k+vw
  CCD23905.1 600 ESHLAFEKITLILFMQAIFDFDHIGLIKEYKSKNyNFVEKCVW 642
                 9999*************************888887******** PP

>> ORC3_N  Origin recognition complex (ORC) subunit 3 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   6.1   1.6e-08   0.00014     112     331 ..     125     353 ..      30     354 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.6e-08
                 TS-EEEEE-CCC-SSCHHHHHHHHHHHHHCC.......H-------------------GGG--HHHHHHH.HHHHGS.SSHHHHHTTTT-TSS-SS.-- CS
      ORC3_N 112 vtplvvlLqsrdckalkvalekllsqLmeke.......eeeeedeaeevsesdakslrksqkslraLkrW.Yeevtrktserarskkraakaekiqskp 202
                 v   +  +  ++c++++ +l++ +++L +            +++++ ++++++ ++   s ++++ L +    ev+  +s  a+ k+        ++ +
  CCD23905.1 125 VLNAIIDMDKKECPNVRMMLRRAMFKLFSIGdtdkhktT-GSKEDQLKQEDKEMNEDDGSDSDVEDLGHRaVDEVSYDLSLVANFKDIF-----HKNLN 217
                 5555667788*****************865444433211.1122222234445555556666677665320233333333333333332.....22478 PP

                 EEEEES-STTS-HHHHHHHHHHHHHTCT..TC-EEEEEEESS-HHHHHHHS-HHHHCCTTEEE....EEB--HHHHHHHHHHHTTT-TTSS-EE-HHHH CS
      ORC3_N 203 vVvileDlEsfdakVLqdfililseyvs..elPlvlvlGvATSvsaihgllPaavssklavel....FqslsakshlaavldkvlLtpefpfkLsgkvl 295
                 ++  +++lEs++ + L++f++ l++ ++  ++ +++++ +    s i + l +++  +l+ +       s  + ++ + ++++ l t e  ++Ls++ +
  CCD23905.1 218 LIFNIKELESINLSSLDSFLVLLKSTLKypHVKITFIFNISSNLSNIEKNLKQSTIRLLKKKYsaldISSNRGFKYANRIFQSFLDTVEGKLNLSDRFI 316
                 99999******************99886447999**********************9998765111134455667889********************* PP

                 HH.HHHHHHCT---HHHHHHHHHHHHHHHHTT-GGGG CS
      ORC3_N 296 qv.LldiFlehdfSvsafikalklallehFmtqplsv 331
                 ++ L+++ + +++ ++   k l ++l+  F+++p sv
  CCD23905.1 317 KFiLTKMANNSNHNLKLLTKMLDYSLMSYFYQNPFSV 353
                 97356788999***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       902  (0.0503096); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 4812.68
//
Query:       CCD23906.1  [L=905]
Description: hypothetical protein NDAI_0C02460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-71  239.1  24.0    5.3e-71  239.1  24.0    2.5  4  RSN1_7TM  Calcium-dependent channel, 7TM region, putative pho
    1.1e-27   96.7   0.6    1.1e-27   96.7   0.6    2.9  4  RSN1_TM   Late exocytosis, associated with Golgi transport
     0.0001   22.6   3.1    0.00026   21.3   3.1    1.9  1  PHM7_cyt  Cytosolic domain of 10TM putative phosphate transpo


Domain annotation for each model (and alignments):
>> RSN1_7TM  Calcium-dependent channel, 7TM region, putative phosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.56   3.4e+03      51      73 ..      78     100 ..      59     105 .. 0.63
   2 ?   -7.2   3.3         3   1.8e+04      10      18 ..     176     184 ..     168     198 .. 0.50
   3 !  239.1  24.0   8.9e-75   5.3e-71       1     274 []     509     784 ..     509     784 .. 0.98
   4 ?   -2.4   0.0       0.4   2.4e+03     143     173 ..     800     829 ..     798     842 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.56
    RSN1_7TM  51 svvtgllPtlllslllallpiil 73 
                  +++g+l ++++  + +ll ++l
  CCD23906.1  78 RFLSGILLSVIFLAFQILLFLFL 100
                 44555555555555555555444 PP

  == domain 2  score: -7.2 bits;  conditional E-value: 3
    RSN1_7TM  10 vlliifwii 18 
                 +l+++f+i+
  CCD23906.1 176 FLIFFFFIL 184
                 222222222 PP

  == domain 3  score: 239.1 bits;  conditional E-value: 8.9e-75
    RSN1_7TM   1 rklivtlllvlliifwiipvafvgllsnletltkvlpflkkilelskkllsvvtgllPtlllslllallpiilrllsklqGalsrselelsvvskyfaF 99 
                 r++++++l +l+ii wiipv ++gl+s++++l++ ++  + i++ ++ + +++ ++++ ++l +l+ ++p+i+r++s l+ + +  e+++++++++f+F
  CCD23906.1 509 RSVAANILSILTIIGWIIPVGLIGLISQIPYLRSPVKLPSVIINNTEFINDMLMSIFSVMTLVFLTEVVPYIFRWFSLLKVCKTGVEIQIDIQRWFFIF 607
                 68899********************************************************************************************** PP

    RSN1_7TM 100 lvvnvFlvftlagtalslleeiidnptsipkllaeslpkasnFfityillqglagaaleLlqlvklilflikrkflsktprdlaerytkppsfdygtey 198
                 l+v++Flv+t++++++ ++e++++np sip+lla+ lpk+snF ++++l++gla+a+++++++++l++ l+ +k +  tp++++er ++  sf++g  y
  CCD23906.1 608 LFVHIFLVVTISSGLSFIIESLVNNPVSIPSLLAHDLPKSSNFLCSFVLMRGLAYAGGNIIRMKELLCELLYYKPFIYTPHKRFERLKTSLSFQWGAIY 706
                 *************************************************************************************************** PP

    RSN1_7TM 199 pkvllifvialiYsviaPlilpfaliyfllgylvykyqllyvydtky..esgGklwpralnrllvglvlfqllliglf 274
                 p +++i +i++iYsviaP+ilp++++ f+l y+ +ky + ++y++k+  e+ Gkl+p+al++l++g+++++++l+glf
  CCD23906.1 707 PIFSVIGCIGIIYSVIAPVILPMCCVSFSLVYISFKYLFEFQYNNKNksETFGKLYPQALMQLYAGIYCMEICLMGLF 784
                 ********************************************65524777************************98 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.4
    RSN1_7TM 143 fityillqglagaaleLlqlvklilflikrk 173
                 f++ i++q   +++  L ql +l l++ik++
  CCD23906.1 800 FVSTIIIQYK-ISTKHLSQLNHLPLYYIKNS 829
                 8899999965.88899999999999999875 PP

>> RSN1_TM  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.6   1.9e-31   1.1e-27       2     155 ..      79     261 ..      78     262 .. 0.82
   2 ?   -1.8   0.2      0.39   2.3e+03      84     101 ..     511     526 ..     493     533 .. 0.72
   3 ?   -4.4   0.3       2.5   1.5e+04      84      98 ..     560     574 ..     557     578 .. 0.63
   4 ?   -2.1   0.3      0.47   2.8e+03      15      37 ..     729     751 ..     716     809 .. 0.54

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 1.9e-31
     RSN1_TM   2 lltslvinlvlalvflllFlilRkknkrvYaprtylkg..........eeertpplpqkgl..............fgWipallkisdeeilekaGLDay 76 
                 +l+ +++++++ ++++llFl+lR+k+k++Y++++ lk           +       ++                  +W  +l+  sde + +k+GLDay
  CCD23906.1  79 FLSGILLSVIFLAFQILLFLFLRTKLKSIYQANRVLKLhekgqeddygK-------DD--SgtpwgdnttktekkTNWASQLFMASDEIYKKKCGLDAY 168
                 6788999**************************9998876654443331.......22..133566666788999************************ PP

     RSN1_TM  77 vflrflkmlikiflvlavlalivLlPvn.........atggegedskesk............sgldklsisnvs..egsnrlwahvvvayiftglvlyl 152
                 ++lrflk+li +f++l+++ +++L+P++         +         e++            + ldkl +sn+   ++ n l++h+++ ++++ ++ ++
  CCD23906.1 169 FLLRFLKFLIFFFFILSLVHIPILIPLHlfsndqnmiY---------EDYdrkddkldqlksHLLDKLNMSNIIppAEPNILIIHLILGVFVISWFHIM 258
                 ****************************5555555541.........433444455555765778********9899999****************999 PP

     RSN1_TM 153 lyr 155
                 l +
  CCD23906.1 259 LNS 261
                 865 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.39
     RSN1_TM  84 mlikiflvlavlalivLl 101
                 ++++i+++l+++++i  +
  CCD23906.1 511 VAANILSILTIIGWI--I 526
                 456788888888884..4 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 2.5
     RSN1_TM  84 mlikiflvlavlali 98 
                 ml+ if+v++++ l+
  CCD23906.1 560 MLMSIFSVMTLVFLT 574
                 666777777766665 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.47
     RSN1_TM  15 vflllFlilRkknkrvYaprtyl 37 
                 +++++F+++  ++k +++     
  CCD23906.1 729 MCCVSFSLVYISFKYLFEFQYNN 751
                 23333333333333333222222 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   3.1   4.3e-08   0.00026       4     176 .]     283     497 ..     280     497 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.3e-08
    PHM7_cyt   4 vlvtgiPkelrseeklkeffeelypgkvvesvqiv.rdvkkldklveerekavrkleaal..skykkngkklpkkr....................... 76 
                 + v ++Pk++    k+ e+f+ +  g+ +++vq+  rd+kk+  ++++   +++k+e+++    ++k  k+++k++                       
  CCD23906.1 283 LYVDNVPKDMG---KIMEHFSLI--GS-IRDVQFLsRDTKKYYTIWKRMCSIQEKIETIImeIMLEKFFKSTRKPKgwkmyrfywnkliffsktsyrlf 375
                 6799*******...9*****976..55.5889876599*****************999851145566666665555999******************** PP

    PHM7_cyt  77 ......................pthklgflglkligkk.vdaidyyrekleeldeeieeerekvkkkp............lgaaFvtfesersaaavak 140
                                          k +f + +   +k  + +  y++  e+ ++e++++++ +++ +            l+ +F++f++ + a+ v+ 
  CCD23906.1 376 nfrirlkwkdsskiiashypswEIEKQSFIENR--YNKfQEVLAKYNKISEKWEKEYYQLETGHQN-FitsnrhanpdayLEKVFIQFDTVETAH-VFG 470
                 ***************999966644444454433..3331334566666666666666666665533.1334445666777777*******98886.542 PP

    PHM7_cyt 141 qakcaaqiqqssnptlkpkkwtvelAPePrDviWeN 176
                 q    + + q+++     ++  v   P+P+D+ W+N
  CCD23906.1 471 Q----LLLFQHHKE-W--NN--VVIGPNPNDIRWSN 497
                 2....222333332.2..34..5556*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       978  (0.0545485); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.41
# Mc/sec: 6547.17
//
Query:       CCD23907.1  [L=438]
Description: hypothetical protein NDAI_0C02470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.2e-135  449.5   3.8   7.4e-135  449.3   3.8    1.1  1  MMM1      Maintenance of mitochondrial morphology protein 1


Domain annotation for each model (and alignments):
>> MMM1  Maintenance of mitochondrial morphology protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.3   3.8  4.1e-139  7.4e-135       1     332 []      93     424 ..      93     424 .. 0.88

  Alignments for each domain:
  == domain 1  score: 449.3 bits;  conditional E-value: 4.1e-139
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX.XXXXX-HHH...........HHHHHHHHTTT-- CS
        MMM1   1 lsftqGllvGqlsvvllliifikffifgeasskeskasskaaerlssskkklssvikkkkkekeessedleekkssnv...veessakiesiLektyYd 96 
                 +sf+qG+++Gq+s+++lli+fikffif+++++k++  ++++++ ls+      s+ k+ +++++ +++     ++++v   ++e+++ i++iLektyYd
  CCD23907.1  93 WSFAQGFIIGQISIIMLLIFFIKFFIFSDTQPKDRVLANTTSK-LSI-----LSIFKRGDNSNSIEQDGVVPYNTERVndsNDEQTTIISTILEKTYYD 185
                 9******************************999887655444.444.....3344444444443333333333334433378889999********** PP

                 TTTS--B--HHHHHHHHHHHHHHHH-TT.HHHHHHHHHHHHHH.GGCS-TTEEEEEEEEEE--S---EEEEEEE.EE-TTTTSS-EEEEEEEEEEEEEE CS
        MMM1  97 veshqpesLDWfnvLiaqtiaqfreeal.ekdnilksLnealn.seelpdyldkikvteidlGedfPifsncriikeskesekkrLeakidvdlsDtlt 193
                 v+sh+pesLDWfnvLiaq+i+qfr+e + ek+ il+sLne+ln ++el++yl+ i++teid+G dfPifsncr+   s++  kk+L+a+id+dl+D+l+
  CCD23907.1 186 VTSHDPESLDWFNVLIAQIIEQFRNELWlEKEGILNSLNEYLNtRKELSEYLGPITITEIDIGSDFPIFSNCRVNIVSNSVGKKNLQARIDIDLNDRLA 284
                 ***************************957999**********9999***************************9999999****************** PP

                 EEEEEEEEESSSSSSEE---EEEEEEEEEEEEEEEEEE...E--SSS-....-S--------...---S-EEEEEE-SS-EEEEEEEEESSSSTT-TTH CS
        MMM1 194 lgietkLllnyPkpltavLPvalavsvvrfsgtLtvslipstkaeelv.keeeeeeeeeeeeeeeeeegtalvfsflpdyrldlsvksliGsrsklqdv 291
                 +g+et+L+ln+P+p +a+LP++++v+++rf+g+L++sl ++++ ++++ +++ ++++++++++++e++g++lvfsf+p+y ++++++s+iGsrskl+++
  CCD23907.1 285 FGLETNLVLNFPRPSIATLPIKINVAIIRFQGCLNISLTTAEEFSSKEcNSQYNASTDKSTDRANESTGYYLVFSFSPEYTMEFDIHSMIGSRSKLENI 383
                 **************************************76655444433556667777788888999******************************** PP

                 HHHHHHHHHHHHHHHHHHHBTT-EEEEE----S--GGGEE- CS
        MMM1 292 PkiaslvearlkkWfeercvePrfqvvklPslWPrkkntre 332
                 Pki+sl+e+++kkWf+ercvePrfq+vklP+lWPr+kntre
  CCD23907.1 384 PKISSLIEYQIKKWFVERCVEPRFQFVKLPNLWPRSKNTRE 424
                 ***************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3371.28
//
Query:       CCD23908.1  [L=728]
Description: hypothetical protein NDAI_0C02480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-09   38.7   4.4    0.00096   19.7   0.1    3.4  3  PH_12     Pleckstrin homology domain
  ------ inclusion threshold ------
      0.067   12.9   0.4       0.44   10.3   0.0    2.4  3  DUF5331   Family of unknown function (DUF5331)


Domain annotation for each model (and alignments):
>> PH_12  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.3     0.053   4.8e+02      43     125 ..     367     450 ..     330     456 .. 0.62
   2 !   17.4   0.0   5.5e-07     0.005       1      58 [.     482     540 ..     482     545 .. 0.84
   3 !   19.7   0.1   1.1e-07   0.00096      61     131 ..     586     662 ..     562     664 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.053
       PH_12  43 ygdfeekspqdpsleeltek..idlsdisevksgkeaphskesgkssssl.skksssklsfslitlskekellelv.asseseaaeW 125
                 + d  +ks+   ++++l     + l+++ ++ s ++ p+s +s+ ++    s +s+s ++fs    s+ +++l+++   + ++a  W
  CCD23908.1 367 WIDSGSKSKE--DINSLLTLlpVILEKVNRILSSEKSPSSPQSHLTTAGSpSVSSTSLVAFSQSK-SNLNKTLSIIqSLTYKTARQW 450
                 5555555553..34444444335689999999999998888766443333488888888888888.555555544304444555555 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 5.5e-07
       PH_12   1 vkeqRincLleGawfpk..pgesgkrekkkwrfvkLspnrkvLhygdfeekspqdpslee 58 
                 v  qR+ +L++Gaw++   p  s+ +   k +f   s n+  L++ +f+ k++  p +ee
  CCD23908.1 482 VTHQRLLQLQKGAWVYAenPLDSNIKV-PKLYFLVVSDNHANLLIREFNTKQDELPIVEE 540
                 568*************85455666665.9********************99987676665 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 1.1e-07
       PH_12  61 ekidlsdisevksgkeaphskesgksssslskksssklsfslitl......skekellelvasseseaaeWlDGLsm 131
                   i+l+ i ++++ +   h+++++  ++ +s+k+  +l  + +++      ++ k++++++ +s++ a++WlDGL++
  CCD23908.1 586 IVIPLKHIVHFEKRELNRHISNDKIFEDEKSSKNLVNLVHTTLYTeaklsdKNRKHIFKFYLDSKEAAYIWLDGLQL 662
                 3399999999999999999999888888887777777766666666999989999********************75 PP

>> DUF5331  Family of unknown function (DUF5331)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   4.9e-05      0.44      34      85 ..     233     283 ..     215     296 .. 0.84
   2 ?   -3.3   0.0      0.79   7.1e+03      58      81 ..     415     439 ..     410     459 .. 0.71
   3 ?   -1.5   0.2      0.23   2.1e+03      76      98 ..     688     710 ..     681     720 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 4.9e-05
     DUF5331  34 s.vktpdgGkRPssslilGvinalePklaqlllpFsklnsdedklievlgLnf 85 
                 s  k +d Gk   s+ ++ ++n + P + ++++ F + n++ ++ i+ l+L f
  CCD23908.1 233 SaFKLSDYGKTTLSDRLFNAVNNVLPTINNWMYEFNE-NAN-EEYIDLLNLSF 283
                 337899*****************************87.555.56799999988 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.79
     DUF5331  58 Pkla.qlllpFsklnsdedklievl 81 
                 P ++ + l+ Fs+ +s+ +k + ++
  CCD23908.1 415 PSVSsTSLVAFSQSKSNLNKTLSII 439
                 5554146888888888888766655 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.23
     DUF5331  76 klievlgLnfdPekeLekreeek 98 
                 k ++++ Ln+d + eL++ +++ 
  CCD23908.1 688 KNVQMIYLNIDDDLELSEVDTDD 710
                 5688999*********9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 5066.76
//
Query:       CCD23909.1  [L=771]
Description: hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-47  160.4   0.2    8.2e-47  159.2   0.2    1.6  1  DEAD        DEAD/DEAH box helicase
      1e-31  109.5   0.4    1.8e-29  102.3   0.0    3.2  3  Helicase_C  Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.057   13.8   0.6       0.34   11.2   0.6    2.3  1  AAA_19      AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   0.2   1.4e-50   8.2e-47       2     176 .]     274     444 ..     273     444 .. 0.94

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 1.4e-50
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.kgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldngv 98 
                 +iQ+++ip++l g+d+++ a TGsGKT+af+ip++++++ +  + + +++++++PtreLa q+++ +kk++k+  +l+  l +gg + r+q + l++++
  CCD23909.1 274 PIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLFKpAKVSSTRVIVLTPTRELAIQIADVAKKIGKFvNGLTFGLAVGGLNLRQQEQILKQRP 372
                 8************************************98878788888************************95559999***************999* PP

                 SEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  99 divvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 div++tpgr++d++ ++ ++n+++v++lV+DEadr+l++gf++++n+i++ l       + +rq++++SAT+++++k+l
  CCD23909.1 373 DIVIATPGRFIDHVrNSASFNVDSVEILVMDEADRMLEEGFQEELNEIMQLL-------PTKRQTMLFSATMNSKIKQL 444
                 **************77888****************************99999.......56688*********999875 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.012        74       9      73 ..     311     378 ..     304     411 .. 0.74
   2 ?   -2.4   0.0      0.97   5.8e+03       5      31 ..     419     443 ..     413     459 .. 0.60
   3 !  102.3   0.0   3.1e-33   1.8e-29       6     111 .]     485     592 ..     480     592 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.012
                 HH..HHTTTTSEEEEEESSHH...HHHH...HHHH.HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C   9 ll..kleeeggkilifvntid...rlek...vkll.lekkgikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 ll    +++  ++++ ++t++   +      +k + +  +g+++    g l+ +++e+il+q      d++iat
  CCD23909.1 311 LLfkPAKVSSTRVIVLTPTRElaiQ--IadvAKKIgKFVNGLTFGLAVGGLNLRQQEQILKQRP----DIVIAT 378
                 445556788999*********7552..23343333133459*******************9973....466665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.97
                 HHHHHHHHTTTTSEEEEEESSHH.HHHH CS
  Helicase_C   5 allellkleeeggkilifvntid.rlek 31 
                  +++ll     ++++++f+ t + ++++
  CCD23909.1 419 EIMQLL---PTKRQTMLFSATMNsKIKQ 443
                 344444...6677888888887765543 PP

  == domain 3  score: 102.3 bits;  conditional E-value: 3.1e-33
                 HHHHH..HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHH CS
  Helicase_C   6 llell..kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiq 102
                 l +l+    e +++++++fv ++++++k++++l   g++va lhg+l+q++r+e++++f++ e+ vLi+td a+rG+dipk+++Vin+d+p++++ y +
  CCD23909.1 485 LFNLIkkLDEYSQKRMVVFVARKETAHKLRIILGLLGMNVAELHGSLTQEQRLESVTKFKSLEIPVLICTDLASRGLDIPKIEVVINYDMPKSYDIYLH 583
                 5555543367899*************9999999999*************************************************************** PP

                 HHTTSSSTT CS
  Helicase_C 103 riGRtgRag 111
                 r+GRt+Rag
  CCD23909.1 584 RVGRTARAG 592
                 *******97 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6   5.7e-05      0.34      13     112 ..     289     406 ..     276     675 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.7e-05
      AAA_19  13 llvtaGpGtGKTrv..lkhivallvelggvkpeeillvaftgrAakelrerlaalgae..atTiHrlal...........ldfddlltealelle.... 92 
                 ++  a  G+GKT    +  i +ll +  +v+  +++++++t+  a ++++  +++g+     T+  la+           l             +    
  CCD23909.1 289 IIAGAVTGSGKTAAfmIPIIERLLFKPAKVSSTRVIVLTPTRELAIQIADVAKKIGKFvnGLTFG-LAVgglnlrqqeqiL-------------Kqrpd 373
                 4445557*****86114455577788899999*****************9998877653344444.444444444333330.............22333 PP

      AAA_19  93 .............eaeeekklqeeellivDEfq 112
                              +++ + ++ + e+l+ DE+ 
  CCD23909.1 374 iviatpgrfidhvRNSASFNVDSVEILVMDEAD 406
                 333344444444322233333333366666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2522  (0.140666); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.14u 0.33s 00:00:01.47 Elapsed: 00:00:00.51
# Mc/sec: 4509.28
//
Query:       CCD23910.1  [L=77]
Description: hypothetical protein NDAI_0C02500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-21   75.5   6.3    3.8e-21   75.2   6.3    1.1  1  COX17     Cytochrome C oxidase copper chaperone (COX17)
    0.00034   20.6   4.7      0.015   15.3   0.1    2.2  2  Cmc1      Cytochrome c oxidase biogenesis protein Cmc1 like
     0.0041   17.2   3.5     0.0063   16.6   3.5    1.4  1  CHCH      CHCH domain


Domain annotation for each model (and alignments):
>> COX17  Cytochrome C oxidase copper chaperone (COX17)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   6.3   6.3e-25   3.8e-21       1      48 []      26      77 .]      26      77 .] 0.95

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 6.3e-25
       COX17  1 eklKpCCaCpetKkaRDeCilesgaeee....kCkelieahkaCmrslGFkv 48
                ek+KpCC+C+ +K++RD+C+l+++++++    +C+e+i+++kaCm+++GF+v
  CCD23910.1 26 EKPKPCCVCKPEKEERDKCLLFNTDDSDsslsSCEEYIQKYKACMKGYGFEV 77
                699********************988778999******************97 PP

>> Cmc1  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.7   0.00051         3      34      53 ..      33      52 ..      24      56 .. 0.88
   2 !   15.3   0.1   2.5e-06     0.015       9      30 ..      55      76 ..      52      77 .] 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00051
        Cmc1 34 kCneekeamkkClkeyrtde 53
                 C+ eke+ +kCl   + d 
  CCD23910.1 33 VCKPEKEERDKCLLFNTDDS 52
                6************9998775 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 2.5e-06
        Cmc1  9 arkeCaelikalaeChkdrllk 30
                ++ +C+e+i++++ C k+++++
  CCD23910.1 55 SLSSCEEYIQKYKACMKGYGFE 76
                6789*************98886 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   3.5   1.1e-06    0.0063       1      34 [.      34      71 ..      34      72 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.1e-06
                THHHHHHHHHHHHHCTSS....TTTTHHHHHHHHHHHC CS
        CHCH  1 CgeefkeylkClkdnsde....fskCrkefeafkeCvk 34
                C++e  e  kCl  n+d+     s C ++++++k+C+k
  CCD23910.1 34 CKPEKEERDKCLLFNTDDsdssLSSCEEYIQKYKACMK 71
                5555555558999999966778**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 551.82
//
Query:       CCD23911.1  [L=847]
Description: hypothetical protein NDAI_0C02510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.4e-103  345.6   3.3   3.5e-103  345.1   3.3    1.2  1  DPPIV_N        Dipeptidyl peptidase IV (DPP IV) N-terminal re
    2.3e-50  171.0   1.1    3.9e-50  170.3   1.1    1.3  1  Peptidase_S9   Prolyl oligopeptidase family
     0.0012   19.5   0.0       0.01   16.5   0.0    2.0  2  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.067   12.8   0.6       0.26   10.9   0.3    1.9  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
      0.085   12.7   0.0       0.17   11.7   0.0    1.5  1  Abhydrolase_3  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.1   3.3  9.7e-107  3.5e-103       1     354 []     166     532 ..     166     532 .. 0.95

  Alignments for each domain:
  == domain 1  score: 345.1 bits;  conditional E-value: 9.7e-107
                 TTTSSEEEEEECEEEESSSEETTEEEEEETTTEECEEEETTTT.BSEEEEESSTTEEEEEETTEEEEESTTTS.EEEECES-STTTEEESB--HHHHHH CS
     DPPIV_N   1 spdgkflllatnaeknwRhsytaeyyiydletneveelspgeeklqlakwSPagdklafvrnnnLyvrelatg.keiqlTsdgsagifnGvadWvyeEE 98 
                 spd+k+ll++tn++knwRhs++++++iyd  ++e ++ ++  + ++la+wSP++ ++a+v+nnn+y+ ++a+   + ++T+dg++ ifnG++dWvyeEE
  CCD23911.1 166 SPDLKYLLIRTNSKKNWRHSSFGTFFIYDKDAEEEKKFHKLGDNIALAQWSPNSIDIAYVQNNNIYLYSVAECkITATITDDGNSRIFNGKPDWVYEEE 264
                 79******************************888888887888**************************99966678********************* PP

                 TSSSSBEEEE-TTSSEEEEEEEECTTS-EEEEEESSSSC-.SS-EEEEEE--BTTS---EEEEEEEEC..TTSCEEECS-HHHHCTTCEEEEEEEECTT CS
     DPPIV_N  99 vlgsnsavwWspdgsrlaylrfdeseVpeitlpsytdees.qypevksikYPkaGsknpkVelkvvdl..asgktvevqlpdslsekdeyitrvkWtsd 194
                 vl+++ a+wWsp+g++la++++de++V+e+t+p+y ++ +  ype + ikYPk+G++np+V+l +++l  +s + + v+l +  +e++ +it+vkW+++
  CCD23911.1 265 VLETDRALWWSPKGDYLAFFKTDETKVEEFTIPYYVQNPDdIYPEMRPIKYPKSGTPNPTVDLWIYNLvdQSSHPTDVNLQHMHAESPVLITEVKWINN 363
                 ************************************998889**************************6544444599999999*************** PP

                 SCCEEEEEEETTSTEEEEEEEETTTCCEEEEE.EEESSS-SSS-S-EEE-......TTTSSEEEEEEETTSSEEEEEEESSS-C.EEESS-SSS-EEE. CS
     DPPIV_N 195 eksllvqwlnRsqnrlkvvlvdaetgravvkl.eetsdgWvelhdevhfl......krdesgflwisekdGfkHLylfdldgkseikqlTsGeweVts. 285
                 e  l++++ +Rs++ lkv l+da+ ++++++  + ++ gW+e++++++++      +r+e g+++i + +Gf+HL +++  +++e++ lT+G+weV s 
  CCD23911.1 364 ES-LIAKISDRSSDILKVLLIDADLKKTEMVReNPSEGGWWEITHNTMPIpkdsshNRSEHGYIDIFPINGFNHLVYYSPATSNEPIVLTNGSWEVVSg 461
                 99.**********************99999996668889****************9999*************************************999 PP

                 EEEEETTTTEEEEEESSSE.TTEBEEEEEESSCTTEEEESSTTTSEE.EEEEE-TTSSEEEEEEESSSSSE CS
     DPPIV_N 286 ilavdekrdlvyFtatkds.PlerhlYsvslesggeltrltdeegdh.ysasfspsgkyyvlkysgpdtpp 354
                 +la+d++ ++vyF+at +s +++rhl++v+l++++e+ +++d ++ + ysasfs+  k+++l+y+gp +p+
  CCD23911.1 462 PLAFDAELNRVYFIATIESsSTQRHLFYVELNNPQEIIQVSDVKNGGvYSASFSSGSKFALLTYRGPRLPY 532
                 ****************95559*********************99999*********************996 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.3   1.1   1.1e-53   3.9e-50       5     209 ..     636     836 ..     631     839 .. 0.94

  Alignments for each domain:
  == domain 1  score: 170.3 bits;  conditional E-value: 1.1e-53
                   HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHH.H-GGG-SEEEEESE--- CS
  Peptidase_S9   5 selqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakegyvdserlaitGgSyGGyltgaaln.qrpdlFkaavaevpvvd 100
                   ++  +++++G +vvv+++rG+g +G++f+  ++ +lg+ e+ D+iaaa+   +++yv+se++ ++G+SyGGylt+ +l+ + +++Fk+++a++pv+d
    CCD23911.1 636 FNEVVASQLGAIVVVVDGRGTGFKGKKFRSLVRDNLGEFEAIDQIAAAKQYSAKSYVNSEKISLFGWSYGGYLTLKVLErDGGETFKYGMAVAPVTD 732
                   56677889***********************************************************************999*************** PP

                   CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-S.EEEEEETTS-SSTTSSHHHHH CS
  Peptidase_S9 101 vlrydsdtdllteeymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgkn.vlllifpdegHgvgkprakve 196
                   ++ yd+    +te+ym+++++  n egy   s+++++  +k+ +++L++hG+ Dd+v+++++lk+++ L+ + +  +++++f d++H ++ ++a+++
    CCD23911.1 733 WRLYDTV---YTERYMHTPQE--NIEGY-IKSSVHDVLPFKEVKRFLVMHGTGDDNVHFQNTLKFLDLLTVNEVRnFDVHVFADSDHAIKYHNANAA 823
                   *******...*******7765..*****.888899999999*****************************766666********************* PP

                   HHHHHHHHHHHHC CS
  Peptidase_S9 197 elarllaFlkeal 209
                    + rll+++++a+
    CCD23911.1 824 VFTRLLNWAADAF 836
                   *********9887 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.8e-06      0.01      20     103 ..     641     734 ..     621     768 .. 0.65
   2 ?    0.0   0.0       0.3   1.1e+03     174     209 ..     773     815 ..     739     827 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2.8e-06
                    HHHHCCTCEEEEE--TTSTS-GGCS--HHH.......CHHH.HHHHCCTT.....TTSEEEEEETCHHHHHHHHHHCC......EEEEES-..--- CS
  Abhydrolase_6  20 aallaagvhvlapDlpGhGrsdpppldled.......ladl.aalldelaa...gggpvvlvGHSlGGalalaaapla....lvvgvlldppptal 100
                    a  l+a v  +++D +G+G+   +  +l +       + d+ aa+ +  a+   +  ++ l+G+S+GG+l l ++       +  g +++p   ++
     CCD23911.1 641 ASQLGAIV--VVVDGRGTGFKGKKFRSLVRdnlgefeAIDQiAAAKQYSAKsyvNSEKISLFGWSYGGYLTLKVLERDggetFKYGMAVAP---VT 731
                    45556667..99******9554444444331111122233324444444338989999*************99444446766555577777...55 PP

                    -TT CS
  Abhydrolase_6 101 pag 103
                    +++
     CCD23911.1 732 DWR 734
                    554 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.3
                    EEE.CTT-CHHH.....HCHHCCCH...STTEEETCE...SSS-H CS
  Abhydrolase_6 174 lvl.ggeDplvp.....rllerlla...qagarlpvvlpgaGHlp 209
                    lv+ g++D+ v+      +l +ll+   ++ +++ +v+++++H++
     CCD23911.1 773 LVMhGTGDDNVHfqntlKFL-DLLTvneVRNFDV-HVFADSDHAI 815
                    34447888855522222222.4444566677777.9999999954 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   7.2e-05      0.26      57     140 ..     645     735 ..     618     762 .. 0.75
   2 ?   -0.9   0.0      0.27   9.7e+02     230     258 ..     771     800 ..     737     813 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.2e-05
                    T-EEEEEE-TTSTTS-S---TTTTTHHHHHHHHHHHHHH......C.TTEEEEEEEEEECHHHHHHHHHCT.T--TTEEEEEEECE-S-TCC CS
  Peptidase_S15  57 GYavVvqdvrGtggSeGeftvgdsdeaedgadvidWlak......q.pwsnGkVgmtGiSYlGttqllaaa.tgvpalkaivpeaaisdlyd 140
                    G +vVv+d+rGtg    +f +   ++     ++id +a+      +    + k+  +G SY+G++ l +++ +g +  k  +++a+++d+  
     CCD23911.1 645 GAIVVVVDGRGTGFKGKKFRS-LVRDNLGEFEAIDQIAAakqysaKsYVNSEKISLFGWSYGGYLTLKVLErDGGETFKYGMAVAPVTDWRL 735
                    779*********998888888.55556666666666666666766559999**************998887256788899999999999843 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.27
                    -EEEEEECCSSTTC.CHHHHHHHHHCCTT- CS
  Peptidase_S15 230 pvllvgGwnDwnvk.ngaiklyealkapgv 258
                      l+++G  D+nv  ++++k+ + l+ ++v
     CCD23911.1 771 RFLVMHGTGDDNVHfQNTLKFLDLLTVNEV 800
                    57999*********9*99999888887766 PP

>> Abhydrolase_3  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.8e-05      0.17      56     113 ..     677     736 ..     631     769 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.8e-05
                    HHHHHHTH...HHHTETTCEEEEEEETHHHHHHHHHHHHHHHTT---EEEEEEESE-SST..S CS
  Abhydrolase_3  56 lrwlaeqa...welgadpsrivlaGdSaGGnlaaavalrardegepkvagqvliyPvtdl..e 113
                    + ++a+ +   ++  ++ ++i l+G S GG l++ v+ r   e   + +  + + Pvtd   +
     CCD23911.1 677 IDQIAAAKqysAKSYVNSEKISLFGWSYGGYLTLKVLERDGGE---TFKYGMAVAPVTDWrlY 736
                    33333333332366799*******************9665555...89999999999988331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.33s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 5449.90
//
Query:       CCD23912.1  [L=410]
Description: hypothetical protein NDAI_0C02520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-80  269.4   0.0    3.8e-80  269.0   0.0    1.1  1  Thiolase_N     Thiolase, N-terminal domain
    2.9e-48  162.6   0.5    5.4e-48  161.7   0.5    1.5  1  Thiolase_C     Thiolase, C-terminal domain
     0.0012   18.5   0.1     0.0037   16.9   0.1    1.8  2  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.0   0.0   6.4e-84   3.8e-80       1     259 [.      30     281 ..      30     282 .. 0.94

  Alignments for each domain:
  == domain 1  score: 269.0 bits;  conditional E-value: 6.4e-84
                 EEEEEEEEE--EE.TTSTTTTS-HHHHHHHHHHHHHHHHT....S-GGGCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigk.fggslkdlsaeeLlaealkallekag....vdpeevdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkaval 94 
                 +vivsa+r++i k f+gs+kd++++ Ll ++l +l+++ +     + + +de+ +Gnvl+ g+g++++r+a+l++gip++vp++++n++csSgl+av++
  CCD23912.1  30 IVIVSAYRSAIAKgFKGSFKDVNTDYLLYQFLLELIKRLPdslsNHLDLIDEITCGNVLNHGAGATEHRAACLASGIPYSVPFMALNRQCSSGLTAVND 128
                 79************************************99883334569************************************************** PP

                 HHHHHHTTSHSEEEEEEEEESTTS-EEETCTTT.TGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTT CS
  Thiolase_N  95 aaqsiaageadvvvagGvEsmsnaptaestdvr.sglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagk 192
                 +a++i++g++d+ +a GvEsm++++++ +     s     ++ ak++lip+           G+t+en+  ++k+ Re+qdefA++s+qka++a+++gk
  CCD23912.1 129 IANKIKVGQIDIGLALGVESMTKNYMNINPLGTvSDELKVNKDAKKCLIPM-----------GITNENVSSNFKVGREQQDEFAARSYQKAEDAISKGK 216
                 *************************99886554255555677899999999...........************************************* PP

                 TTTTBE-EEEEESSSEEEE-S-TTS-TT--HHHHHTS-BSSSTT.SS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 193 FkdeivPvkvkgkkgkktvdkdeairsevtaekLaklkpaFkke.GtvtAgnasqisDGaaavllmse 259
                 Fk+eivP+++++ k   +vd+de++r++vtae+L k+kpaF k+ Gt++Agn+sq+sDG + vll+++
  CCD23912.1 217 FKNEIVPISLPDGK---VVDTDEGPRANVTAESLGKIKPAFIKDkGTTHAGNSSQVSDGVSGVLLTRR 281
                 ************88...************************************************987 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.5   9.1e-52   5.4e-48       3     122 ..     291     408 ..     289     409 .. 0.97

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 9.1e-52
                 -SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHHHCT CS
  Thiolase_C   3 plakirsyaevgvdpeilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselkkeg 101
                 +++++ ++++vgv+pei+g+gPayai+kvlk   l++e+id+fEinEAFaaqaL+++k+ld+dl+kvN nGGaialGHPlG++G+R+++tll+e++k  
  CCD23912.1 291 IVGRYLAFQSVGVPPEIMGVGPAYAIPKVLKSINLKIESIDVFEINEAFAAQALYCIKKLDIDLNKVNPNGGAIALGHPLGCTGTRQIATLLNEMEK-- 387
                 6788999****************************************************************************************99.. PP

                 TSEEEEEEEETTTEEEEEEEE CS
  Thiolase_C 102 gklgvaalCigggqgvalvie 122
                 g++gv+++Cig+g+g+a+v+ 
  CCD23912.1 388 GQVGVVSMCIGTGMGAAAVFV 408
                 9****************9985 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   6.2e-07    0.0037     167     207 ..     111     151 ..      90     161 .. 0.88
   2 ?   -3.1   0.0      0.76   4.5e+03      11      49 ..     175     213 ..     174     223 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.2e-07
                    SEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---S CS
  ketoacyl-synt 167 psvtvdtACsSslvavhaavqslrsgeadvalaGGvelllt 207
                    p +++   CsS+l+av+ + ++++ g++d+ la Gve +++
     CCD23912.1 111 PFMALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTK 151
                    56677778*****************************9875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.76
                    EEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSBTS CS
  ketoacyl-synt  11 arfPggndveefwelLlegrdaiselpadrwdadklydp 49 
                    +++P g + e + ++   gr+   e+ a+ +++ +  ++
     CCD23912.1 175 CLIPMGITNENVSSNFKVGREQQDEFAARSYQKAEDAIS 213
                    778888888888888888888888888533444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3029.16
//
Query:       CCD23913.1  [L=1016]
Description: hypothetical protein NDAI_0C02530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.2e-112  374.3   0.0    1.5e-77  260.2   0.0    2.2  2  ThiF             ThiF family
      3e-89  299.3   1.4    4.5e-89  298.7   1.4    1.3  1  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
    1.1e-32  112.6   0.0    3.2e-32  111.1   0.0    1.9  1  E1_UFD           Ubiquitin fold domain
    1.3e-27   95.8   0.4      3e-27   94.6   0.4    1.7  1  E1_FCCH          Ubiquitin-activating enzyme E1 FCCH domain
      9e-25   86.7   0.6    2.4e-24   85.3   0.6    1.8  1  E1_4HB           Ubiquitin-activating enzyme E1 four-helix bu


Domain annotation for each model (and alignments):
>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.0   8.3e-36     3e-32       1     235 [.      13     399 ..      13     408 .. 0.90
   2 !  260.2   0.0   4.3e-81   1.5e-77       1     240 [.     412     909 ..     412     913 .. 0.98

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 8.3e-36
                 THHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-CCG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF   1 ysrqlallgedgqekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteritd 99 
                 ysrql++lg++ + k++ s vl++G+ glG e++kn  l+Gv++lt+ D   + +++l+ qf  +e+d+Gkp+ ++ +++l+e+n++v ++ ++  i++
  CCD23913.1  13 YSRQLYVLGKEAMLKMQLSNVLIIGLKGLGIEIAKNVTLAGVKSLTIYDPALVAIEDLSSQFFLTESDVGKPRDQASKAKLAELNSYVPINILQS-IDN 110
                 89****************************************************************************************98875.544 PP

                 CCS-HHHHTT-SEEEEE.SSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH................. CS
                 xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
        ThiF 100 etvleellesvDlVvda.lDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct................. 180
                     ee l++++++v + + n+e+++ +n++c+  gi++i++ t g+ g+v++ + ++ ++++ +     e p+  +v+ ++                 
  CCD23913.1 111 ----EESLKEFQVIVATdTVNLEDKVKLNEFCHPLGIKFISTETRGLFGNVFTDFGDEFTILDPTG----EEPRTGMVSDIEsdgtvtmlddnrhgled 201
                 ....36699999988776888*********************************755666665553....56666666666677777778888899999 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  CCD23913.1 202 gnyvkfsevqgleklndgslfkvevlgpfafkigsvaefgqykkggiftevkvpqktsfktlqqslddpefvfadyakfdrtpqlhlgfqalhqfavrh 300
                 99999999******************************************************************************************* PP

                 ................................................HHHCTE-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEEEECCTTTTEEEE CS
                 ................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 181 ................................................siagnipaiatttavvaglaalellkllsgkeklenslltqvdllesrfen 231
                                                                 ++ g    i  ++a+++gl+a+e+lk++sgk    ++++ ++d les  + 
  CCD23913.1 301 qgqlprpmneedanelvklvtdlsaqepsilggadaeindklikelayQARG---DIPGIIAFFGGLVAQEVLKACSGKFSPLKQFM-YFDSLESLPDP 395
                 ****************************999999999999888877776666...78899********************9998888.89988887666 PP

                 ECCE CS
                 xxxx RF
        ThiF 232 vele 235
                  e+ 
  CCD23913.1 396 KEFP 399
                 6655 PP

  == domain 2  score: 260.2 bits;  conditional E-value: 4.3e-81
                 THHHHHHHHHHHHHHHHTSEEEEE--SHHHHHHHHHHHHHTTT.....EEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTS..EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
        ThiF   1 ysrqlallgedgqekLrdskvllvGaGglGsellknLalsGvg.....kltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdv..evea 92 
                 y++q+a++g d+q+k+++skv+lvG G++G+e+lkn+al+G+g     ++ ++DnD ie+sNlnRqflfr++d+G++K+evaa+a+ ++npd+  +ve+
  CCD23913.1 412 YDNQIAVFGIDFQKKVANSKVFLVGSGAIGCEMLKNWALMGLGsglegHIVVTDNDSIEKSNLNRQFLFRPKDVGRNKSEVAADAVVAMNPDLlnKVEP 510
                 899************************************************************************************************ PP

                 EES-CCGCC...S-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEEECCS-ECTSS-TGGS.EECCCCEEHHH........ CS
                 xxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
        ThiF  93 vteritdet...vleellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvviipgktgcyeCldpsstedptekkvplct........ 180
                   +++++et   +++++++++D+V +alDn++ar +v+r+cv++++pl+e+gtlg++g+++v+ipg t+ y  +     +dp+ek++plct        
  CCD23913.1 511 KIDKVGPETeniFNDSFWQNLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVVIPGLTESYSSS-----RDPPEKSIPLCTlrsfpnki 604
                 *****99666899***************************************************8777776555.....8******************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  CCD23913.1 605 dhtiawakslfqgyfadsaenanvylsqpnfieqsmkqsgdvkgtlesiadslnnrpsnfddciqwarlefekkfnhdikqllynfpkdaktsngepfw 703
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
        ThiF 181 ................................................................................................... 180
                                                                                                                    
  CCD23913.1 704 sgakraptplefdidnddhfhfvvgaanlrafnyglpdegtnpdvehykevissmiipdftpnanlkiqvndedpdpnanndvgdeldmlasslpkpst 802
                 *************************************************************************************************** PP

                 ..............................................HHHCT.E-B-HHHHHHHHHHHHHHHHHHHTTBCGGGCCEEEECCTTTTEEEEE CS
                 ..............................................xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 181 ..............................................siagn.ipaiatttavvaglaalellkllsgkeklenslltqvdllesrfenv 232
                                                               +iag+ ipaiattt++v+gl+ lel+k++ g+e++e++++ +v+l++++f + 
  CCD23913.1 803 ltgfsmkpvefekdddtnhhiefitacsncraqnyfievadrqktkFIAGRiIPAIATTTSLVTGLVNLELYKVVYGCEDIEQYKNGFVNLALPFFGFS 901
                 *************************************************************************************************** PP

                 CCEEEEEE CS
                 xxxxxxxx RF
        ThiF 233 elerakks 240
                 e+ +++k 
  CCD23913.1 902 EPIASPKA 909
                 **998875 PP

>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.7   1.4   1.3e-92   4.5e-89       1     252 []     601     848 ..     601     848 .. 0.95

  Alignments for each domain:
  == domain 1  score: 298.7 bits;  conditional E-value: 1.3e-92
  UBA_e1_thiolCys   1 PneieHtieWArdkFeglFekkpeevnkflkdkekfleelekekeeekletlekvlkllvkerpktfedCvkwArekfeklFnnkikqLlynfP 94 
                      Pn+i+Hti+WA++ F+g+F +++e++n +l++  +f+e+  k++++ k  tle++ ++l ++rp++f+dC++wAr++fek+Fn++ikqLlynfP
       CCD23913.1 601 PNKIDHTIAWAKSLFQGYFADSAENANVYLSQ-PNFIEQSMKQSGDVK-GTLESIADSL-NNRPSNFDDCIQWARLEFEKKFNHDIKQLLYNFP 691
                      9*****************************65.699999999999988.89********.********************************** PP

  UBA_e1_thiolCys  95 kdsktsdGapFWsgpKraPkplefdlenelhleFvvaaanLraqvygikg...erdeeaiakllskvkvpefkpkekvkiavsdeeakeeeeee 185
                      kd+kts+G+pFWsg+KraP+plefd++n++h++Fvv aanLra++yg++    + d e++++++s++ +p+f+p+++ ki+v+de+ + ++++ 
       CCD23913.1 692 KDAKTSNGEPFWSGAKRAPTPLEFDIDNDDHFHFVVGAANLRAFNYGLPDegtNPDVEHYKEVISSMIIPDFTPNANLKIQVNDEDPDPNANN- 784
                      *************************************************97765899****************************99766544. PP

  UBA_e1_thiolCys 186 ed.eeeleelaeeleklakkessla.lklkpieFeKDddtnfhidfitaasNlRArnYkIkeadrlkvK 252
                       d  +el+ la++l+k    +s+l+ +++kp+eFeKDddtn+hi+fita+sN+RA+nY I+ adr+k+K
       CCD23913.1 785 -DvGDELDMLASSLPK----PSTLTgFSMKPVEFEKDDDTNHHIEFITACSNCRAQNYFIEVADRQKTK 848
                      .33899**********....7888889*****************************************9 PP

>> E1_UFD  Ubiquitin fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0   8.8e-36   3.2e-32       1      93 []     920    1012 ..     920    1012 .. 0.99

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 8.8e-36
      E1_UFD    1 WDrlevegeitlkelldyfkekkklevsmislgvsllYasflpkkkdkerlklklselveevtkkkipphqkyldlevsvedeegedvevPlv 93  
                  WDr++++g+i l++l+++f++k +le++m+s+gvsllYasf+p+kk kerl+l+++elv+ +tk  +p+h+++++le++++d+egedvevP++
  CCD23913.1  920 WDRFDIQGDIRLSDLIAHFEKKEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITELVKLITKADLPSHVRTMILEICADDKEGEDVEVPFI 1012
                  *******************************************************************************************97 PP

>> E1_FCCH  Ubiquitin-activating enzyme E1 FCCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.4   8.3e-31     3e-27       2      70 ..     185     253 ..     184     254 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 8.3e-31
                 TTSEEEESTT--S---TT-EEEEES-BT-CCGGGS--EE-EE-SSSEEE----TTS-SEEES-EEEEE- CS
     E1_FCCH   2 npgvVtvleesrhgledgDyVtFseveGmtelNgkeprkikvlgpytFeIgdtsnfspYkrgGivtqvK 70 
                 ++g+Vt+l+++rhgledg+yV+Fsev+G+++lN+++ +k++vlgp++F+Ig + +f++Yk+gGi+t+vK
  CCD23913.1 185 SDGTVTMLDDNRHGLEDGNYVKFSEVQGLEKLNDGSLFKVEVLGPFAFKIGSVAEFGQYKKGGIFTEVK 253
                 689*****************************************************************9 PP

>> E1_4HB  Ubiquitin-activating enzyme E1 four-helix bundle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.6   6.7e-28   2.4e-24       1      69 [.     255     323 ..     255     324 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 6.7e-28
                 -EEE----HHHHTTS-.-BE-S-GGGTTCHHHHHHHHHHHHHHHHCT.T----TT-HHHHHHHHHHHHHH CS
      E1_4HB   1 PktlsFksleesleePeeflisDfakfdrpeqlHlafqALhaFeeeh.grlPrplneedaekvvalakel 69 
                 P++ sFk+l++sl +P ef++ D+akfdr  qlHl+fqALh+F+ +h g+lPrp+needa+++v+l+ +l
  CCD23913.1 255 PQKTSFKTLQQSLDDP-EFVFADYAKFDRTPQLHLGFQALHQFAVRHqGQLPRPMNEEDANELVKLVTDL 323
                 99**************.*************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1016 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 7125.31
//
Query:       CCD23914.1  [L=394]
Description: hypothetical protein NDAI_0C02540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-10   41.9   0.0      4e-10   40.2   0.0    1.9  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont
     0.0024   17.7   0.8     0.0043   16.9   0.8    1.4  1  BBP1_C          Spindle pole body component BBP1, C-terminal
  ------ inclusion threshold ------
      0.012   16.1   5.0      0.028   14.9   5.0    1.5  1  DUF16           Protein of unknown function DUF16


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   6.7e-14     4e-10       6      95 ..     153     237 ..     148     239 .. 0.87

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 6.7e-14
  Gly_transf_sug   6 kaieslakahpdyqvvvlskelekvrvaildlefllsdtpwfeeakkllp.lfialsDllRlaiLykyGGiYlDtDvivlkslrnsigaee 95 
                     k+ +++++++p + + +++ ++       + +++++++ p++ e++ + p   +++ +++++++L+ +GG Y D D+i+++++  ++++e 
      CCD23914.1 153 KNSQKWIDKNPGFVYEIVNPSFA-----EKLIKYYFNNMPEIWETYMKFPkGSSNQMNFVKYLVLLVHGGTYCDKDTIPQQPI-PNWIPEA 237
                     6789****************998.....8889******997778888665156799***************************.8998875 PP

>> BBP1_C  Spindle pole body component BBP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.8   7.2e-07    0.0043      82     172 ..      38     146 ..      24     163 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 7.2e-07
      BBP1_C  82 esldlqskianlekqlvdqaiekdr..eikkleeklldlelrnkeleekreidkikYesrikdLerqllereneik.................dtssss 161
                 + +dlq+++ nl +++ + +  +++  +i  +ee + + e   +el++++e+++ k+e++ k Le++  +  ++i+                 +++++ 
  CCD23914.1  38 KGNDLQYTLRNLPNEITNAVTINNQqqKILGSEEIIRKFETLIEELNQENERQAKKFEKQHKTLEKKINLL-KPISkdsplsarlatrfpykpKSKFPA 135
                 5569************99876555400555667778899**************************999887.466656777777777777777555555 PP

      BBP1_C 162 nafstseyrkk 172
                 ++ +ts+ + +
  CCD23914.1 136 FIWQTSSASMA 146
                 55555555544 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   5.0   4.6e-06     0.028      42      97 ..      58     113 ..      36     114 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.6e-06
                 HHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHH CS
       DUF16  42 kvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkink 97 
                 +++ ++++i   e++++k +  i+el++e + q ++++k+++tle  ++ L+ i+k
  CCD23914.1  58 TINNQQQKILGSEEIIRKFETLIEELNQENERQAKKFEKQHKTLEKKINLLKPISK 113
                 567889999999*********************************99998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1824  (0.101735); expected 358.6 (0.02)
Passed bias filter:                      941  (0.0524848); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 2801.94
//
Query:       CCD23915.1  [L=257]
Description: hypothetical protein NDAI_0C02550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1874.06
//
Query:       CCD23916.1  [L=429]
Description: hypothetical protein NDAI_0C02560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.8e-104  348.4   0.1   6.5e-104  347.1   0.0    1.6  2  Septin       Septin
      4e-07   30.1   0.0    9.9e-07   28.8   0.0    1.8  1  MMR_HSR1     50S ribosome-binding GTPase
    0.00017   21.0   0.0    0.00017   21.0   0.0    2.3  2  AIG1         AIG1 family
    0.00018   21.5   0.7    0.00018   21.5   0.7    3.0  2  RsgA_GTPase  RsgA GTPase
     0.0003   21.3   0.7     0.0016   18.9   0.0    2.1  2  ABC_tran     ABC transporter
      0.002   18.2   8.0     0.0075   16.3   0.2    3.0  3  Dynamin_N    Dynamin family
     0.0025   16.9   0.1     0.0049   16.0   0.1    1.4  1  IIGP         Interferon-inducible GTPase (IIGP)
  ------ inclusion threshold ------
      0.014   14.9   0.3      0.094   12.2   0.3    2.3  1  FeoB_N       Ferrous iron transport protein B
      0.088   12.6   0.3        2.4    7.9   0.1    2.4  2  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
        1.7    9.1  16.3        8.9    6.7  12.0    2.4  2  AAA_23       AAA domain


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.1   0.0  3.6e-107  6.5e-104       1     276 [.      19     299 ..      19     303 .. 0.94
   2 ?   -2.4   0.0       1.2   2.2e+03      83     104 ..     344     365 ..     322     392 .. 0.67

  Alignments for each domain:
  == domain 1  score: 347.1 bits;  conditional E-value: 3.6e-107
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS----.--------.------S-EEEEEEEEET.TCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdliee.ekleease.kkkktveikkkkvvieed.gvklnltviDtpgfGdavdnskswepiveyideqfeey 96 
                 +gi+ft+mvvG+sg G++t+intl+ +++++  + +  +++ +++  +++++++v++e+d gvk++l++iDtpgfGd++dns s+e+i +y++++++e+
  CCD23916.1  19 RGINFTVMVVGQSGCGRSTFINTLCGQQVVDVsTMVLLPTDtSTEIPLQLREETVELEDDeGVKIQLNIIDTPGFGDSLDNSPSFEIISDYVRHRYDEI 117
                 69***************************99834445566658889999********99879************************************* PP

                 HHHCTSS--.SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHH CS
      Septin  97 lreesklkR.kkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakel 194
                 l ees+++R  +++D RvH+cly+i+P g+glk++dve+mk+l + vn+iPvi K+D+lt eElk +K+ i++++++ +++iy++p  ee+  ++ +e+
  CCD23916.1 118 LLEESRVRRnPRFKDGRVHCCLYLITPCGRGLKEIDVEFMKQLGSLVNIIPVICKSDSLTPEELKLNKTLIMDDIDRFKLPIYNFPFDEEEVTQDDYET 216
                 *********999************************************************************************7766666667779** PP

                 HHHHHHC-SEEB-SSSSEEEE.SSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XXX CS
      Septin 195 seklkeslPfaivgsneliek.kgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklsklk 276
                 ++ l++ lPf+i+gsne++++ +   +rgRkypWG+++ve+ + sdF++Lr++ll +hl+dLk++t+e+lYe+yR+e+ls ++
  CCD23916.1 217 NMYLRSLLPFSIIGSNEVYDMgNDLIIRGRKYPWGMLDVEDANISDFVILRNALLISHLHDLKDYTHEILYERYRTEALSGES 299
                 *********************99999*****************************************************9765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHCTSS- CS
      Septin  83 epiveyideqfeeylreesklk 104
                 + + e + +  ++yl +e++++
  CCD23916.1 344 TNLNERVSNTQDTYLAREEQIR 365
                 4556667777777777777764 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   5.5e-10   9.9e-07       2      70 ..      25     109 ..      24     172 .. 0.63

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 5.5e-10
                 EEEEESTTSSHHHHHHHHHTS.TEEESSST.TSSSSEEEEEEEET............TEEEEEEECGGC............SSHHHHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkp.gtTrdinegrvklk............gkeielvDtpGl............iegaseekglgkaf 70 
                 v++vG++  G St+in+l+g+ ++ vs +    T + +e+ ++l+            + +++++DtpG+            i           ++
  CCD23916.1  25 VMVVGQSGCGRSTFINTLCGQqVVDVSTMVlLPTDTSTEIPLQLReetveleddegvKIQLNIIDTPGFgdsldnspsfeiI----------SDY 109
                 89******************9667886665245555566666633223333333333356********54443333333331..........333 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   9.7e-08   0.00017       2      64 ..      24      98 ..      23     116 .. 0.72
   2 ?   -5.6   7.0        10   1.8e+04     127     205 ..     339     416 ..     336     423 .. 0.62

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 9.7e-08
                EEEEESSTTSSHHHHHHHHHTS--............SS--TTTS---SS-EEEEEEETTEEEEEEE--SCCCTTC CS
        AIG1  2 tivlvGktgnGkSaTgNsilgkka............FesklsaqsvtkkcqkksrtwdgkkinViDTPglfdlsv 64
                t+++vG++g+G+S+ +N++ g+++             ++++  q   ++++ +  +  + ++n+iDTPg  d+ +
  CCD23916.1 24 TVMVVGQSGCGRSTFINTLCGQQVvdvstmvllptdTSTEIPLQLREETVELEDDEGVKIQLNIIDTPGFGDSLD 98
                799*********************77777777554333344344444445555555556899*******977654 PP

  == domain 2  score: -5.6 bits;  conditional E-value: 10
                 GGGTTCCHHHHHHHHH-HHHH..HHHHHTTTSEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCC CS
        AIG1 127 ddleddsledylsksspeaLk..evlkecgnRvvlfnnktaskeekeeQvkellelveaivkenggkpytnelyekikeea 205
                 +++++++l++ +s+++ ++L   e ++  ++R  +f+ +   ++e    ++ell+  +++++ ++ +  ++ + ++ ++e+
  CCD23916.1 339 EKANGTNLNERVSNTQDTYLAreEQIRLEEERLKAFEER--VQQELLLKRQELLDRERELREIEE-RLEKEAMLKRQEQEE 416
                 667778888889988888885225788899999999999..445555556788887666655444.333333333333333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.7   9.9e-08   0.00018     100     161 ..      23      93 ..       5      97 .. 0.68
   2 ?    1.6   0.9      0.12   2.2e+02      41      90 ..     372     419 ..     361     429 .] 0.74

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 9.9e-08
                  SEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETT............TEEEESS-SS CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelae............gglliDtPGf 161
                   t+++vGqSG G+St+in+l ++   ++ +vs+       T+t+  l   +e            +  +iDtPGf
   CCD23916.1  23 FTVMVVGQSGCGRSTFINTLCGQ---QVVDVSTMVLLPTDTSTEIPLQLREEtveleddegvkiQLNIIDTPGF 93 
                  467899****************9...667777777777777776655433333334445444444567777777 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
                  HHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTH CS
  RsgA_GTPase  41 laeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegl 90 
                   a e++++  ++l + +ll++e+el+e++e+le+   ++l+ +++++++l
   CCD23916.1 372 KAFEERVQQELLLKRQELLDRERELREIEERLEKE--AMLKRQEQEEQNL 419
                  5678899999*************999999999887..4444444444443 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   9.1e-07    0.0016      13      67 ..      24      78 ..      17     130 .. 0.76
   2 ?   -0.4   0.8      0.88   1.6e+03      40     100 ..     362     411 ..     324     426 .. 0.48

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 9.1e-07
                EEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe 67
                +v +vG++G+G St++++l+g+   +  ++ l  +d++++   +lr+e   l+ +
  CCD23916.1 24 TVMVVGQSGCGRSTFINTLCGQQVVDVSTMVLLPTDTSTEIPLQLREETVELEDD 78
                6899******************999999988887777775555555555555555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.88
                 EEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHHHSTTGGTTCB CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  40 Geilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekalsklglkelkdt 100
                 ++i+l+++ lk   +e++++                   +         ++++e+ ++ ++l+ + + ++
  CCD23916.1 362 EQIRLEEERLKA-FEERVQQ-------------------ElllkrqellDRERELREIEERLEKEAMLKR 411
                 222222222222.2222222...................2333333444444444444444444443333 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   4.2e-06    0.0075       1      39 [.      25      65 ..      25      82 .. 0.75
   2 !    6.5   0.0    0.0045       8.1      90     133 ..      72     118 ..      58     121 .. 0.75
   3 ?   -2.7   2.1       2.9   5.2e+03      58      73 ..     387     404 ..     323     425 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.2e-06
                EEEEEBTTTTHHHHHHHHHTS--S---SS..S---S-EEEE CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpn..ptTrrplelq 39
                ++vvG+   G S+++n L+g+++  +++   + T + +e+ 
  CCD23916.1 25 VMVVGQSGCGRSTFINTLCGQQVVDVSTMvlLPTDTSTEIP 65
                79*********************998886333355555554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0045
                 -EEEEEEETTS-SEEEEE---B-SSSGTTS..HHHHHHH.STTEEEE CS
   Dynamin_N  90 villkilsllvkgltlvDlPGldsvnkrdq..elvkeyi.kkadiil 133
                  + l++ +  + +l+++D+PG+ ++ ++    e++  y+ ++ d il
  CCD23916.1  72 TVELEDDEGVKIQLNIIDTPGFGDSLDNSPsfEIISDYVrHRYDEIL 118
                 55666667777899********9976666566888888866666665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.9
                 E..T-EB--CHHHHHHHH CS
   Dynamin_N  58 k..ekkledfsevreeie 73 
                 +   ++++++ e++e +e
  CCD23916.1 387 QelLDRERELREIEERLE 404
                 122333333333333333 PP

>> IIGP  Interferon-inducible GTPase (IIGP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   2.7e-06    0.0049      34      56 ..      21      43 ..       4      47 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.7e-06
                --EEEEEEESTTSSHHHHHHHHT CS
        IIGP 34 aklkiavtGdsGnGkssFinaLR 56
                ++  ++v+G+sG G+s+Fin+L 
  CCD23916.1 21 INFTVMVVGQSGCGRSTFINTLC 43
                56789****************95 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   5.2e-05     0.094       2      24 ..      24      46 ..      23     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.2e-05
                EEEEEESTTSSHHHHHHHHHTTS CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgak 24
                tv++vG+  +G++t++n+l+g++
  CCD23916.1 24 TVMVVGQSGCGRSTFINTLCGQQ 46
                799******************87 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0013       2.4       4      28 ..      25      49 ..      22      65 .. 0.86
   2 ?    2.1   0.0     0.085   1.5e+02      20      45 ..      67      92 ..      59      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0013
   PduV-EutP  4 illiGkvgsGKttLtqalkgeelkY 28
                ++++G++g+G+ t  ++l g+++  
  CCD23916.1 25 VMVVGQSGCGRSTFINTLCGQQVVD 49
                9*****************9998765 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.085
   PduV-EutP 20 alkgeelkYkktqaiefsdeviDtPG 45
                +l++e+++ +    ++++ ++iDtPG
  CCD23916.1 67 QLREETVELEDDEGVKIQLNIIDTPG 92
                688889999999999**********9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.033        59      23      40 ..      26      43 ..      15      44 .. 0.85
   2 ?    6.7  12.0     0.005       8.9      90     194 ..     313     425 ..     261     429 .] 0.50

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.033
      AAA_23 23 lItGpNGaGKTTildAik 40
                 ++G+ G+G +T+++ ++
  CCD23916.1 26 MVVGQSGCGRSTFINTLC 43
                689***********9887 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.005
      AAA_23  90 iererelskkkgkttkka..klelleideleqfisellgskki....ilnlilflgqerfeefelkdkke...rleelekeleeledekkllekleqek 179
                 ++++ +++  ++  t+ +  + e l+++++  +++e ++++++    + ++i  l +er + fe+  ++e   + +el +  +el ++++ lek+  +k
  CCD23916.1 313 LDDDNNNNNINATLTSPKvpTSEMLNEKANGTNLNERVSNTQDtylaREEQIR-LEEERLKAFEERVQQElllKRQELLDRERELREIEERLEKEAMLK 410
                 33333333333333322222333333333333333333333332222334433.556666666665555544444444444455555555555554444 PP

      AAA_23 180 ekekeleeleeelee 194
                  +e+e ++l+eel +
  CCD23916.1 411 RQEQEEQNLNEELSD 425
                 555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1195  (0.0666518); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3017.51
//
Query:       CCD23917.1  [L=501]
Description: hypothetical protein NDAI_0C02570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-91  303.7   1.4    1.3e-90  303.0   1.4    1.3  1  IGPS           Indole-3-glycerol phosphate synthase
    6.2e-48  163.1   0.0    1.1e-47  162.3   0.0    1.4  1  GATase         Glutamine amidotransferase class-I
    1.5e-08   34.6   0.5    5.9e-08   32.7   0.5    2.0  1  Peptidase_C26  Peptidase C26
     0.0076   16.0   0.3      0.019   14.7   0.3    1.7  1  QRPTase_C      Quinolinate phosphoribosyl transferase, C-term
  ------ inclusion threshold ------
      0.023   15.1   0.6      0.089   13.2   0.2    2.2  2  DUF1040        Protein of unknown function (DUF1040)


Domain annotation for each model (and alignments):
>> IGPS  Indole-3-glycerol phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.0   1.4   3.6e-94   1.3e-90       1     254 []     227     499 ..     227     499 .. 0.96

  Alignments for each domain:
  == domain 1  score: 303.0 bits;  conditional E-value: 3.6e-94
                 HHHCHHHHHHHHHHHHCCS-G..GCCCCG....-SS-SS-HHHHCHCH....TTS-EEEEEE-SEETTTEESBSS--HHHHHHHHTTT.-SEEEEE--C CS
        IGPS   1 lekivaekkeevaeakkrqsl..adleaav..klakpkrsfaeaLres....ekklaliaEvKkaSPskgliredfdpaeiAkkyeeagAsaiSVLtee 91 
                 l++i++++ ++v+e+++ +++  +dle++   +la++ ++f+++L +     +kk+a++aEvK+aSPskg i  ++++ae+A ky++agAsaiSVLte+
  CCD23917.1 227 LNQIYKQRMIDVEEQSNIPGFtkKDLETNFklNLAPKVQNFYQRLISGttnnNKKAAVLAEVKRASPSKGDIFPNAVAAEQALKYAQAGASAISVLTEP 325
                 689******************9999999987799***********8766777999******************************************** PP

                 CCC---CCHHHHHHHH-SS-EEE..........ES---SHHHHHHHHHCT-SEEEEECCCS-HHHHHHHHHHHC.CTT-EEEEEESSHHHHHHHHHTT- CS
        IGPS  92 kyFqGsledLrevrqavslpvlr..........KdFiideyqieearalgadaiLLivkvledeeleelaeaak.slglevLvEvhdeeeleralklga 179
                 ++F+GsledL +vr+ ++    +          K+Fi+++yqi ear++gad++LLivk+l++e+l+el+++a+ ++g+e+LvEv+++eel++alk++a
  CCD23917.1 326 HWFKGSLEDLINVRKVLDKEYAQdetnrpcvlrKEFIFSKYQILEARLAGADTVLLIVKMLSQELLKELYDYATiEMGIEPLVEVNSKEELDIALKINA 424
                 *****************9988878888889999***************************************9759*********************** PP

                 SEEEEESEETTTTEE-CHHHHHHCHCC-TTSEEEEESSS-SHHHHHHHCCTT-SEEEESHHHHC-TTHHHHHHHH CS
        IGPS 180 kiiGvNnRnLktlevdlntteeLaklvpkdvllvaeSGiktredveklkeegvnafLvGeslmrqedvekairel 254
                 ++iGvNnR+L++++vdlntt++L++  pkd+ll+a+SGi++++d+ k+keegv++fLvGe+lmr++dv+k+i +l
  CCD23917.1 425 RVIGVNNRDLHSFTVDLNTTSNLVDATPKDTLLIALSGITESKDADKYKEEGVHGFLVGEALMRSDDVKKFIDAL 499
                 ***********************************************************************9876 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   0.0     3e-51   1.1e-47       1     186 [.      17     199 ..      17     202 .. 0.95

  Alignments for each domain:
  == domain 1  score: 162.3 bits;  conditional E-value: 3e-51
                 EEEESSTSTHHHHHHHHHHTT-EEEEEETTS.HHHHHHHTHHSTSEEEEEEESSCTT..TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEE CS
      GATase   1 lliDnydsvtenlvhalvelgvkvevvpida.saeeilellknpdgilvsgGpgspg..vegkieaikearenkiPiLGICLGmQllaiefgrkvvkek 96 
                 +liDnyds+t+n+ ++l++ g++v+v+++d+ s  e   ++  p+ +++s+Gpg+p+   + + ++i+++++ kiP++GIC+G Q++++ fg++v  + 
  CCD23917.1  17 VLIDNYDSFTWNVYEYLCQEGASVTVYRNDEiSLPEL--IKLAPEILIISPGPGHPKtdSGISRDCIRHFAG-KIPVFGICMGQQCMIDVFGGEVTYAG 112
                 58****************************8455555..5799**************999999*********.************************** PP

                 CEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHH CS
      GATase  97 ekehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnf 186
                  +  hg+t+++++d+++ +++ ++ v  +++H+++ ++ e++p+ levta++e++  +m++++k+  + gvQFHPEs++t+eg+ +++n 
  CCD23917.1 113 -EIVHGKTSPITHDNKGFFKDVPQGVAITRYHSLAGTE-ESLPDVLEVTATTESG-VIMGVRHKEFTVEGVQFHPESILTEEGHLMIKNI 199
                 .9***********************************9.99***********988.9***************************999986 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.5   1.7e-11   5.9e-08     103     216 .]      85     185 ..      76     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.7e-11
  Peptidase_C26 103 ergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaike..laeelrveAvaeDgvi 196
                    + ++P++giC G q +  ++GG++  + e       h       ++  ++ +++++++++ +   ++++ +H+ a +e  l + l+v+A++e gvi
     CCD23917.1  85 AGKIPVFGICMGQQCMIDVFGGEVTYAGEI-----VH------GKTSPITHDNKGFFKDVPQ--GVAITRYHSLAGTEesLPDVLEVTATTESGVI 167
                    5689******************99877662.....23......34668888999*****998..9*********9887779*************** PP

  Peptidase_C26 197 EaieseeakafvlgvQwHPE 216
                      ++++e   +v gvQ+HPE
     CCD23917.1 168 MGVRHKE--FTVEGVQFHPE 185
                    ***9999..5699******9 PP

>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   5.4e-06     0.019      84     159 ..     407     487 ..     377     493 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.4e-06
                 EEEESSHHHHHHHHHHT-SEEEEES--H....HHHHHHHHHHHHHSTT.SEEEEESS--TTTHHHHHCTT-SEEEECHHCH CS
   QRPTase_C  84 evevesleeleevleaeadiimLDnfsv....eelkkaveelkeknkr.vlievSGgvtlenveeyaksgvdvisvgalth 159
                  vev+s+eel+ +l+ +a +i + n +      +l+++ ++++++ k+ +li  SG  + ++  +y+++gv  + vg +  
  CCD23917.1 407 LVEVNSKEELDIALKINARVIGVNNRDLhsftVDLNTTSNLVDATPKDtLLIALSGITESKDADKYKEEGVHGFLVGEALM 487
                 5************************96622223344444444444444699999******************999998765 PP

>> DUF1040  Protein of unknown function (DUF1040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   2.5e-05     0.089      51      79 ..     230     259 ..     195     262 .. 0.83
   2 ?   -2.0   0.0       1.4     5e+03      12      39 ..     322     349 ..     318     353 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.5e-05
     DUF1040  51 iyhlkmresdkeemiPGl.kkdyeedfkta 79 
                 iy+ +m + ++++ iPG+ kkd e +fk  
  CCD23917.1 230 IYKQRMIDVEEQSNIPGFtKKDLETNFKLN 259
                 9****************7578******965 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
     DUF1040  12 llqpeWkkekdlnllqllqklaeeagfe 39 
                 l +p+W k +  +l+++ + l +e + +
  CCD23917.1 322 LTEPHWFKGSLEDLINVRKVLDKEYAQD 349
                 5689999998888888888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3675.53
//
Query:       CCD23918.1  [L=611]
Description: hypothetical protein NDAI_0C02580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-82  276.3   2.8    4.7e-82  275.9   2.8    1.2  1  Syja_N        SacI homology domain
  ------ inclusion threshold ------
       0.17   12.5   0.4       0.62   10.8   0.4    2.0  1  Meiosis_expr  Meiosis-expressed


Domain annotation for each model (and alignments):
>> Syja_N  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.9   2.8   5.2e-86   4.7e-82       3     320 .]      60     333 ..      58     333 .. 0.90

  Alignments for each domain:
  == domain 1  score: 275.9 bits;  conditional E-value: 5.2e-86
      Syja_N   3 ilGlirllsgsyllvitkreevgtlkgkkeiykitevellplsseeeaekalkslkaktekkkeekeleekllklleklfessgsfYFsydlDltrslq 101
                 ++G+++l+ ++y ++ +  ee g+++++ +iyki + +++p++          s         + +++e+++lklle ++ ++ +++Fsy++Dlt+slq
  CCD23918.1  60 LIGFLKLKLNKYAIIANTVEETGNFQNN-SIYKIASHSIVPCKIT--------S---------NIDSDESEYLKLLELQL-KTATLFFSYTYDLTNSLQ 139
                 79******99**************9776.************8533........2.........23345899*****6566.799*************** PP

      Syja_N 102 rqlekssesskslplweraderFvWNrhllkplieaeldswllpviqGfveqsklklsksqkekekkevtltlisRrsrkraGtRylrRGiddeGnvAN 200
                 r+ ++     ++      +derF+WN++l+ +l + ++  ++ pvi+G+++ +++         +++ +t+ li+Rrsr+raGtRy+rRGid++Gnv N
  CCD23918.1 140 RNNSS----GPTP-----YDERFFWNHYLTGELRSINATAFIQPVIYGYAKFIETIF-------QSSPITIGLITRRSRFRAGTRYFRRGIDQDGNVGN 222
                 *9874....2333.....699***********988899************6333322.......3456******************************* PP

      Syja_N 201 fvEtEqilevessekeskilSfvqiRGSiPlfWsqeptlkykpkirierseeenleafkkHfekllkrYgkvvvvnLlekkgrEkkLgeayekavkkln 299
                 f EtEq+l+v+    +++i+Sf+q+RGS+P+ W ++++l+ykp++ ++++e+++ +a+kkHf+++++ Yg+ ++vnL++++g+Ek++++aye++vk++ 
  CCD23918.1 223 FNETEQLLSVN----NKDIYSFLQTRGSVPVQWAEINNLQYKPNLVLNADESSTVAAAKKHFNQQIELYGDNYLVNLVNQSGHEKPVKDAYENVVKQIG 317
                 *********74....569********************************************************************************8 PP

      Syja_N 300 klekekkklkyveFDfhkeck 320
                      ++kl+y++FDfh+ec+
  CCD23918.1 318 -----NDKLHYIYFDFHHECR 333
                 .....89*************7 PP

>> Meiosis_expr  Meiosis-expressed
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   6.9e-05      0.62      41      74 ..     309     342 ..     274     343 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.9e-05
  Meiosis_expr  41 etGfvkklqrkdgtyyYynkeReCedkevhkvkl 74 
                    +  vk++      y Y++ + eC+  + h+vkl
    CCD23918.1 309 YENVVKQIGNDKLHYIYFDFHHECRKMKWHRVKL 342
                   45568999999999*******************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.36
# Mc/sec: 5039.88
//
Query:       CCD23919.1  [L=323]
Description: hypothetical protein NDAI_0C02590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-12   46.6   1.1    5.6e-12   45.4   1.1    1.7  1  Ribosomal_L30    Ribosomal protein L30p/L7e


Domain annotation for each model (and alignments):
>> Ribosomal_L30  Ribosomal protein L30p/L7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   1.1   3.1e-16   5.6e-12       1      51 []     142     194 ..     142     194 .. 0.98

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 3.1e-16
                    EEEEE-S-..STTS-HHHHHHHHHTT-SSTT.EEEE--SSHHHHHHHHHCCCGE CS
  Ribosomal_L30   1 lfVtrirs..iigvppkvrktLqlLgLrkin.gtvvklntpsirGmLkkVkhlV 51 
                    lfV+r+++  ++++p+kv k+L lL+L ++n g++vkl++     +Lk++++++
     CCD23919.1 142 LFVIRVKGptAVNLPHKVFKILSLLRLEELNtGVFVKLTKNVFP-LLKLISPYI 194
                    7*******9999********************************.********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1936  (0.107981); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 2618.51
//
Query:       CCD23920.1  [L=303]
Description: hypothetical protein NDAI_0C02600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-41  139.2  15.0      6e-11   42.7   0.1    8.0  8  WD40           WD domain, G-beta repeat
    8.1e-14   51.7   3.2      0.031   14.6   0.0    5.7  6  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
      9e-10   37.8   9.1     0.0085   14.8   0.1    4.9  4  Nup160         Nucleoporin Nup120/160
    1.2e-06   27.6   0.5      0.081   11.7   0.0    3.3  3  Nucleoporin_N  Nup133 N terminal like
    2.8e-06   26.5   1.2       0.41    9.5   0.0    4.8  6  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
    0.00052   18.7   0.0       0.05   12.1   0.0    2.1  2  Cytochrom_D1   Cytochrome D1 heme domain
    0.00064   19.1   0.3       0.68    9.2   0.2    2.8  3  Nbas_N         Neuroblastoma-amplified sequence, N terminal
     0.0098   14.3   0.0       0.03   12.6   0.0    1.7  2  Frtz           WD repeat-containing and planar cell polarity 
  ------ inclusion threshold ------
      0.017   14.1   2.8      0.083   11.8   0.0    3.1  4  PALB2_WD40     Partner and localizer of BRCA2 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0005      0.99      24      37 ..       4      17 ..       2      18 .. 0.80
   2 ?    6.1   0.0     0.011        22       2      37 ..      23      58 ..      22      59 .. 0.75
   3 !   42.7   0.1     3e-14     6e-11       2      38 .]      66     103 ..      65     103 .. 0.94
   4 !   20.4   0.0   3.4e-07   0.00068       8      38 .]     114     144 ..     108     144 .. 0.89
   5 ?    5.9   0.0     0.013        26      12      37 ..     159     186 ..     148     187 .. 0.73
   6 !   23.6   0.0   3.3e-08   6.7e-05       2      38 .]     198     235 ..     197     235 .. 0.94
   7 !   31.8   0.3   8.2e-11   1.6e-07       7      38 .]     246     278 ..     240     278 .. 0.89
   8 ?    1.7   0.0      0.28   5.7e+02       3      16 ..     284     298 ..     282     302 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0005
                EEEEEETTSEEEEE CS
        WD40 24 wlasGsdDgtvriW 37
                +l+s+++D+t+r+W
  CCD23920.1  4 LLVSAGYDHTIRFW 17
                4677788******* PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.011
                EEEEEEESS.SS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  2 qclrtltGH.ss.vtslafspdgawlasGsdDgtvriW 37
                 c rt+  H +s v+ l+   d+++la+++   +v+++
  CCD23920.1 23 VCSRTI-QHsDSqVNRLQITNDKKLLAAAG-HLNVKLY 58
                577887.595337*************9887.6666655 PP

  == domain 3  score: 42.7 bits;  conditional E-value: 3e-14
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++++++GH ++vts++f++d++w++++s+Dgt+++Wd
  CCD23920.1  66 NPVGSFEGHkGNVTSVSFQQDNRWMVTSSEDGTIKVWD 103
                 6899*****666*************************9 PP

  == domain 4  score: 20.4 bits;  conditional E-value: 3.4e-07
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + H  +v+ +  +p++  l+s+++Dg++riWd
  CCD23920.1 114 K-HnAPVNEVVIHPNQGELISCDRDGNIRIWD 144
                 4.7567*************************9 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.013
                 SE..EEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 sv..tslafspdgawlasGsdDgtvriW 37 
                 +v   sl+  +dg++la++ d g+++iW
  CCD23920.1 159 DVslESLSIASDGSMLAAANDRGNCYIW 186
                 34337999*********9999******9 PP

  == domain 6  score: 23.6 bits;  conditional E-value: 3.3e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++++t+++H + vt +  s+d + la++s D++ riW+
  CCD23920.1 198 KPVKTFSAHeTYVTRVLLSSDVKHLATCSADQSARIWS 235
                 799******888*************************5 PP

  == domain 7  score: 31.8 bits;  conditional E-value: 8.2e-11
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l+GH  +v+++afs d+a+l+++s D+ vr+Wd
  CCD23920.1 246 LEGHqRWVWDCAFSADSAYLVTASSDHYVRLWD 278
                 78**777**************9988*******9 PP

  == domain 8  score: 1.7 bits;  conditional E-value: 0.28
                 EEEEEESS.SS.EEEE CS
        WD40   3 clrtltGH.ss.vtsl 16 
                  +r + GH ++ + ++
  CCD23920.1 284 IVRQYGGHhKGaI-CV 298
                 68999***96668.77 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0079        16      33      70 ..      27      63 ..      12      72 .. 0.80
   2 !   14.6   0.0   1.5e-05     0.031      35      77 ..      72     114 ..      63     120 .. 0.86
   3 !   10.6   0.0   0.00027      0.54      30      81 ..     102     159 ..     101     162 .. 0.85
   4 !    7.7   0.0    0.0021       4.2      35      74 ..     156     195 ..     154     214 .. 0.78
   5 ?    3.1   0.0      0.06   1.2e+02      36      70 ..     205     239 ..     195     245 .. 0.86
   6 !   11.9   0.1   0.00011      0.22      27      85 ..     231     296 ..     218     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0079
  ANAPC4_WD40 33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesg 70
                 + +++ds+v+ L+  +d klLa a +  +v+l+d++++
   CCD23920.1 27 TIQHSDSQVNRLQITNDKKLLAAAGH-LNVKLYDINTT 63
                 567899***************98765.56888888775 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.5e-05
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                  ++++++v+s+++++d++ ++ + +dg++++ d+ s  v ++++
   CCD23920.1  72 EGHKGNVTSVSFQQDNRWMVTSSEDGTIKVWDVRSPSVPRNYK 114
                  57899****************************9988776665 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00027
  ANAPC4_WD40  30 wtl......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  w++       + k++  v+++  +p+   L     dg++r+ d  + ++ h+++ +++
   CCD23920.1 102 WDVrspsvpRNYKHNAPVNEVVIHPNQGELISCDRDGNIRIWDLGENQCTHQITPEED 159
                  55555555566789999************************************99876 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0021
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvh 74 
                  ++ed + +sL+   dg++La a + g++ + ++ + +  +
   CCD23920.1 156 PEEDVSLESLSIASDGSMLAAANDRGNCYIWEMPNHTDAS 195
                  57899999********************998766554443 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.06
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  +++  v+ +  + d k La   +d + r+ ++e+g
   CCD23920.1 205 AHETYVTRVLLSSDVKHLATCSADQSARIWSVENG 239
                  567789999999999******************98 PP

  == domain 6  score: 11.9 bits;  conditional E-value: 0.00011
  ANAPC4_WD40  27 qrvwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                   r+w++        + +++++ v + a++ d   L+ a sd  vrl d ++ ++v+++  +++    
   CCD23920.1 231 ARIWSVengfqrecALEGHQRWVWDCAFSADSAYLVTASSDHYVRLWDLSTREIVRQYGGHHKG-AI 296
                  5777777777766666788999999********************************9888775.33 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   1.0    0.0008       1.6     234     271 ..       6      48 ..       2     108 .. 0.55
   2 !    9.3   0.0    0.0002       0.4     229     259 ..     127     157 ..     114     206 .. 0.71
   3 !    5.9   0.1    0.0022       4.3     228     251 ..     213     240 ..     189     247 .. 0.80
   4 !   14.8   0.1   4.2e-06    0.0085     227     255 ..     260     287 ..     250     290 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0008
                 EEEETT-EEEEEETTTTEEEEEEE--......-SSSTTS--SS CS
      Nup160 234 falsrdgkLrvWnlltgkclatidll.....rdeeaqdesssk 271
                 +++  d+++r W  ltg c +ti+ +     r +++ d++  +
  CCD23920.1   6 VSAGYDHTIRFWEALTGVCSRTIQHSdsqvnRLQITNDKKLLA 48 
                 566679****************888768887555555554444 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0002
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatidll 259
                 +q  l +  rdg++r+W+l  ++c+ +i+  
  CCD23920.1 127 NQGELISCDRDGNIRIWDLGENQCTHQITPE 157
                 555677778****************999866 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0022
                 .....TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 228 i....gqtylfalsrdgkLrvWnlltgk 251
                 +    + ++l++ s d+  r+W++++g 
  CCD23920.1 213 VllssDVKHLATCSADQSARIWSVENGF 240
                 344457899****************985 PP

  == domain 4  score: 14.8 bits;  conditional E-value: 4.2e-06
                 ..TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 227 eigqtylfalsrdgkLrvWnlltgkclat 255
                   +++yl+++s+d+ +r+W+l+t  ++++
  CCD23920.1 260 A-DSAYLVTASSDHYVRLWDLSTREIVRQ 287
                 3.99*******************999875 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00012      0.24     201     235 ..      75     109 ..      48     121 .. 0.77
   2 !   11.7   0.0     4e-05     0.081     198     250 ..     113     161 ..     105     186 .. 0.77
   3 ?    3.4   0.1     0.013        25     198     233 ..     227     282 ..     195     289 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
                    GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCE CS
  Nucleoporin_N 201 reeivqlridssrrilytlsskgvirvydlsasng 235
                    +  ++++   +  r+ +t s++g+i+v+d+ +++ 
     CCD23920.1  75 KGNVTSVSFQQDNRWMVTSSEDGTIKVWDVRSPSV 109
                    4578888888888*****************98765 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4e-05
                    ---GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHH CS
  Nucleoporin_N 198 asereeivqlridssrrilytlsskgvirvydlsasngesslksdidirqill 250
                     + + ++ +++i++ ++ l++ +++g+ir++dl     e+  +++i+++++++
     CCD23920.1 113 YKHNAPVNEVVIHPNQGELISCDRDGNIRIWDLG----ENQCTHQITPEEDVS 161
                    5566778899************************....444666666666555 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.013
                    ---GG-EEEEEEECCT....................CEEEEEETTSEEEEEEEETT CS
  Nucleoporin_N 198 asereeivqlridssr....................rilytlsskgvirvydlsas 233
                    a+++ +i++++ + +r                      l+t+ss++ +r +dls++
     CCD23920.1 227 ADQSARIWSVENGFQRecaleghqrwvwdcafsadsAYLVTASSDHYVRLWDLSTR 282
                    55566666666666666666666666666666666689***************965 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.13   2.6e+02     264     297 ..       9      42 ..       3      63 .. 0.75
   2 !    6.0   0.0    0.0025         5     185     217 ..      72     105 ..      52     134 .. 0.86
   3 ?    0.1   0.0      0.15     3e+02     201     241 ..     130     165 ..     108     174 .. 0.63
   4 ?    1.6   0.0     0.053     1e+02     185     217 ..     157     189 ..     130     209 .. 0.64
   5 ?    3.2   0.0     0.018        36     186     216 ..     206     236 ..     188     245 .. 0.81
   6 !    9.5   0.0   0.00021      0.41     186     218 ..     248     281 ..     237     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
    Ge1_WD40 264 dnnselklWscelWtClqtikfapsiesslkaev 297
                   ++ ++ W + + +C +ti+ + s  + l+ ++
  CCD23920.1   9 GYDHTIRFWEALTGVCSRTIQHSDSQVNRLQITN 42 
                 5567799999999999999999988777776554 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0025
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkffqvy 217
                 e h  ++++ +f  d   + t+sedG++k + v 
  CCD23920.1  72 EGHKgNVTSVSFQQDNRWMVTSSEDGTIKVWDVR 105
                 5554489999*********************985 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.15
    Ge1_WD40 201 alatasedGevkffqvyledeeeprCLheWkPhdGkslssl 241
                  l  +  dG ++ + +      e++C h+  P +  sl sl
  CCD23920.1 130 ELISCDRDGNIRIWDL-----GENQCTHQITPEEDVSLESL 165
                 4444555666665543.....45667777777766666665 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.053
    Ge1_WD40 185 eehsliveaafspdGtalatasedGevkffqvy 217
                 ee+  + + ++++dG  la+a   G    + + 
  CCD23920.1 157 EEDVSLESLSIASDGSMLAAANDRGNCYIWEMP 189
                 444455556667777777777777777666654 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.018
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqv 216
                 +++ ++   +s+d   lat+s+d   + + v
  CCD23920.1 206 HETYVTRVLLSSDVKHLATCSADQSARIWSV 236
                 44689999****************9999987 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.00021
    Ge1_WD40 186 ehs.liveaafspdGtalatasedGevkffqvyl 218
                  h   + + afs+d + l tas+d +v+++ +  
  CCD23920.1 248 GHQrWVWDCAFSADSAYLVTASSDHYVRLWDLST 281
                 55447999**********************8765 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0057        11      20      66 ..      60     106 ..      45     118 .. 0.78
   2 !   12.1   0.0   2.5e-05      0.05      53     202 ..     134     281 ..     122     295 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0057
                   EETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSS CS
  Cytochrom_D1  20 ldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwa 66 
                   ++ ++ + +  +e++    +s+ f +d+R++ + + Dg++++ D+  
    CCD23920.1  60 INTTNPNPVGSFEGHKGNVTSVSFQQDNRWMVTSSEDGTIKVWDVRS 106
                   55666777888888888889999******************999865 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.5e-05
                   EETTSEEEEEESSSSSEEEEEE-SSEE..EEEEE--TTSEEEEEE.....EETTEEEEEETTT--EEEEEE--EE-SSSS---EEEEEE-SSSSEEE CS
  Cytochrom_D1  53 igRDgkvtliDLwakeivaevkiGlna..rsvavSqddryvivgn.....YlPgqlvildaetLelvkvisargltvderesRVaaivasperpefv 142
                     RDg++ + DL +++  +++    +    s+ ++ d+  ++++n     Y        da +L++vk+ sa +  v    +RV  +++s  ++   
    CCD23920.1 134 CDRDGNIRIWDLGENQCTHQITPEEDVslESLSIASDGSMLAAANdrgncYIWEMPNHTDASNLKPVKTFSAHETYV----TRV--LLSSDVKHLAT 224
                   579**********99988888765544114566668999888877333334444445579*************9999....888..78999999889 PP

                   EEETTTTEEEEEE-SSSSSEEEEEEE--SSEEEEEE-TTSSEEEEEEGGGTEEEEEETTT CS
  Cytochrom_D1 143 vnlkdtgeillvdysdlknlktrtieaakflhDggldpdkRYflaaanaedkvavvdtke 202
                    +  ++ +i+ v+  ++ +++   ++ ++++ D ++++d  Y+++ a ++  v ++d  +
    CCD23920.1 225 CSADQSARIWSVE--NGFQRECALEGHQRWVWDCAFSADSAYLVT-ASSDHYVRLWDLST 281
                   999*******996..77788889999****************999.55566777777655 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.34   6.8e+02     210     257 ..      95     144 ..      68     165 .. 0.55
   2 !    6.4   0.0    0.0024       4.8     228     262 ..     158     192 ..     133     201 .. 0.83
   3 !    9.2   0.2   0.00034      0.68       3      77 ..     213     284 ..     211     300 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.34
      Nbas_N 210 krgllkllslklys..rkaeekdgvfkmslspdgtllavihfsgklsiwd 257
                 + g +k+ +++  s  r+ + +  v ++ + p+   l      g++ iwd
  CCD23920.1  95 EDGTIKVWDVRSPSvpRNYKHNAPVNEVVIHPNQGELISCDRDGNIRIWD 144
                 33444444444333113333444445555555555555555555555555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0024
      Nbas_N 228 ekdgvfkmslspdgtllavihfsgklsiwdipslk 262
                 e+  +  +s++ dg++la+    g+  iw++p   
  CCD23920.1 158 EDVSLESLSIASDGSMLAAANDRGNCYIWEMPNHT 192
                 3445567999**********************865 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00034
      Nbas_N   3 lvlasngkllavv.qdqcveirsakddfgsvigkcqvpkdpnpqwrrvawshdctllayaestgtvrvfdlvgsel 77 
                 ++l+s+ k la+   dq   i s+++ f      c +    +  w   a+s d + l  a s   vr++dl   e+
  CCD23920.1 213 VLLSSDVKHLATCsADQSARIWSVENGFQR---ECALEGHQRWVWD-CAFSADSAYLVTASSDHYVRLWDLSTREI 284
                 7899999999875279**********9985...8999888877775.89**********************98886 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.5e-05      0.03     261     349 ..      77     166 ..      73     173 .. 0.88
   2 ?   -3.0   0.0      0.85   1.7e+03     265     289 ..     256     280 ..     251     287 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
        Frtz 261 qvislafnpdedkLllGceDssviLydeer.kitklvkaevvPsliswhpdsaillvasergelqifDlaLspiriqllsedvePksvld 349
                 +v s++f++d+  ++  +eD+++ ++d     + +  k +   + +  hp++  l+ ++  g+++i+Dl     ++q+  e+ +  + l 
  CCD23920.1  77 NVTSVSFQQDNRWMVTSSEDGTIKVWDVRSpSVPRNYKHNAPVNEVVIHPNQGELISCDRDGNIRIWDLGENQCTHQITPEEDVSLESLS 166
                 7899999999999**************876256777788888899*********************************999877666655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.85
        Frtz 265 lafnpdedkLllGceDssviLydee 289
                 +af+ d   L+  + D  v L+d +
  CCD23920.1 256 CAFSADSAYLVTASSDHYVRLWDLS 280
                 6666666666666666666666654 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.15     3e+02     303     340 ..      13      48 ..       5      59 .. 0.68
   2 ?   11.8   0.0   4.2e-05     0.083     301     350 ..     137     186 ..     128     187 .. 0.93
   3 ?   -1.3   0.2       0.4   8.1e+02      29      54 ..     219     245 ..     198     256 .. 0.74
   4 ?   -1.9   0.1      0.59   1.2e+03     306     327 ..     253     274 ..     244     298 .. 0.60

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.15
  PALB2_WD40 303 aiavWdlllghctalllpesdesWslvrWsgtdsqlla 340
                 +i +W+ l g c+   + +sd++   ++ ++ + +lla
  CCD23920.1  13 TIRFWEALTGVCSR-TIQHSDSQVNRLQITNDK-KLLA 48 
                 79999999999955.566778777766666543.4444 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.2e-05
  PALB2_WD40 301 sGaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsvlvy 350
                  G i +Wdl   +ct +++pe d s   +  ++  s+l a +  G+ +++
  CCD23920.1 137 DGNIRIWDLGENQCTHQITPEEDVSLESLSIASDGSMLAAANDRGNCYIW 186
                 599***********************999999999*99999999**9997 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.4
  PALB2_WD40  29 kdssgscavdvssvwWeva.glkelci 54 
                  ++ ++c+ d s+  W v+ g ++ c 
  CCD23920.1 219 VKHLATCSADQSARIWSVEnGFQRECA 245
                 345678999999999998526667665 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.59
  PALB2_WD40 306 vWdlllghctalllpesdesWs 327
                 vWd  ++  +a l++ s +++ 
  CCD23920.1 253 VWDCAFSADSAYLVTASSDHYV 274
                 6777777777777777666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.55
# Mc/sec: 1671.07
//
Query:       CCD23921.1  [L=340]
Description: hypothetical protein NDAI_0C02610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-36  125.7   0.1    1.9e-36  125.3   0.1    1.2  1  DnaJ_C      DnaJ C terminal domain
    4.9e-24   84.2   0.5    7.8e-24   83.6   0.5    1.3  1  DnaJ        DnaJ domain
  ------ inclusion threshold ------
       0.29   11.2   0.0       0.29   11.2   0.0    1.9  2  Malate_DH   Malate dehydrogenase enzyme
       0.35   11.5   8.8       0.69   10.5   8.8    1.4  1  Forkhead_N  Forkhead N-terminal region


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   0.1   4.3e-40   1.9e-36       1     148 []     170     325 ..     170     325 .. 0.93

  Alignments for each domain:
  == domain 1  score: 125.3 bits;  conditional E-value: 4.3e-40
                 EEEEEEE-HHHHHH-.EEE.EEEE.........TEEEEEE-TT--TT-EEEETT-SSSS....S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C   1 ieveleisleelykGktkkikikrnvi..kkekktlevkipaGikdgqkirlegeGdeeg..gepGDlivtikvkphpvFkrkgndlyveveislaeal 95 
                 ++v+l++sle+l++Gk+k +ki r+     +ekk+++++ ++G+k+g+ki++++eGd ++  g +  l +++++k hp Fkr+g++l+++v++s++e l
  CCD23921.1 170 VTVNLPVSLEDLFTGKKKSFKIGRKGPggSQEKKQIDIQLKRGWKAGTKITYKNEGDFNPrtGGRKTLQFVLQEKAHPLFKRDGENLLYTVPLSFQESL 268
                 5799********************99998888889**********************44446***********99************************ PP

                 HTEEEEEE-SS-EEEE....EE--TT-EEEETT-S-EET...TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C  96 lGgklevptldgkvkl....kitqpgevlrikgkGmpklkkpgkrGdlyvevkvefP 148
                 lG + +v+t+dg+       + +qp e+ + +g+Gmp+ k+p++rGdl++++k+++P
  CCD23921.1 269 LGFSKTVQTIDGRSLSlsrtQPIQPTETTTYPGQGMPNPKNPNQRGDLIITYKIDYP 325
                 **********887665475444*********************************99 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.5   1.7e-27   7.8e-24       2      63 .]       7      65 ..       6      65 .. 0.96

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 1.7e-27
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +Y++Lgvs++a+++eIkk Yrk al+yHPDk    + ++ekFk+i+eAye+Lsd++kR+ YD
  CCD23921.1  7 LYDLLGVSPSANDQEIKKGYRKAALQYHPDKP---TGNTEKFKQISEAYEILSDSNKREVYD 65
                8*******************************...6677**********************9 PP

>> Malate_DH  Malate dehydrogenase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.5e-05      0.29      22      29 ..      27      34 ..      15      35 .. 0.85
   2 ?   -3.7   1.6       2.9   1.3e+04       2      10 ..     288     297 ..     287     298 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.5e-05
   Malate_DH 22 RkAALeYH 29
                RkAAL+YH
  CCD23921.1 27 RKAALQYH 34
                ******** PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.9
   Malate_DH   2 TsP.Qpaask 10 
                 T+P Qp+ ++
  CCD23921.1 288 TQPiQPTETT 297
                 8994599886 PP

>> Forkhead_N  Forkhead N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   8.8   0.00015      0.69      49      98 ..     114     164 ..      89     174 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00015
                 .XXXXX.XXXXXXXXX.XXXXXX.XXXXXXXXXXXXXXX..XXXXXXXXXX CS
  Forkhead_N  49 mngmssssmtgmssgyasagspl.gmmgmssmssslspsgtmgamgsapag 98 
                 ++g s+++  gm++g++++g +  gm+gm sm+ + +++g+  + ++a+++
  CCD23921.1 114 FGGHSAGGFGGMPGGMGGMGGMPgGMGGMPSMGGMGGMPGGFRSATGASQR 164
                 567788888899999999887777888899998888888888886665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2456.85
//
Query:       CCD23922.1  [L=311]
Description: hypothetical protein NDAI_0C02620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-26   91.9   0.5    4.4e-26   91.0   0.4    1.5  2  Pirin     Pirin
    3.2e-14   53.1   0.0    1.3e-13   51.2   0.0    1.9  2  Pirin_C   Pirin C-terminal cupin domain
     0.0026   17.5   0.4     0.0026   17.5   0.4    1.7  2  Cupin_2   Cupin domain


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.4   7.4e-30   4.4e-26       3     108 .]      26     123 ..      24     123 .. 0.91
   2 ?   -3.4   0.0       1.6   9.5e+03      43      63 ..     190     210 ..     180     211 .. 0.70

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 7.4e-30
                 EECCGTCC.TTCCEECTCEECCEEESS.S.ETTEEEET-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEEEE-SS..SS CS
       Pirin   3 rvrralgkaaelqsvdpFlfldefdpaelevgeedvigagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsEmneee..ee 99 
                 +vrr++g+  + ++++pFl++d+f+ +++         agfp+hph+g et+ty+l+G + h+D +G+kgv+rpGd+q mtAg+ i+hsE++ +   ++
  CCD23922.1  26 HVRRSIGS-MKQRNFSPFLLMDHFTVSHP---------AGFPDHPHHGQETITYVLNGMIAHEDFTGSKGVLRPGDLQFMTAGKAIMHSEIPVKMenGT 114
                 67888998.78889***********6655.........8****************************************************99885577 PP

                 -EEEEEEEE CS
       Pirin 100 sleglqlWv 108
                 +  g+qlWv
  CCD23922.1 115 PGIGIQLWV 123
                 78899***8 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.6
                 EEEEEEBSEEEEEEEECSEEE CS
       Pirin  43 fpphphrgletvtylleGeve 63 
                 f + + r+++   y+ +G+ve
  CCD23922.1 190 FFQETPRNFNFFLYITKGAVE 210
                 555556778888888888875 PP

>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.51   3.1e+03      17      33 ..      61      80 ..      47     105 .. 0.62
   2 !   51.2   0.0   2.2e-17   1.3e-13       7     101 ..     185     279 ..     179     282 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.51
                -TT-EEEEEEEES-E...EE CS
     Pirin_C 17 pegleaavyvleGel...ev 33
                 +g e++ yvl+G +    +
  CCD23922.1 61 HHGQETITYVLNGMIaheDF 80
                56778899999998733333 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 2.2e-17
                 -TT-EEEEE--TT-EEEEEEEES-EEESSTTEEE-TTEEEEE-.SSSEEEEE--S.S-EEEEEEEE----S--EEETTEEESSHHHHHHHHHHHHTT CS
     Pirin_C   7 eagaelelplpegleaavyvleGelevggerseieeeqlavlg.dgdslvvkaee.kgarvlLlaGePlgepvvqyGpfVmntkeeieqafedyreg 101
                 ++g e+++++p +++ ++y+ +G +e++g     ++ +++ ++ dgds++ k+ + +++++ +++G  l++p+ q+GpfV  ++e + q f++y+ +
  CCD23922.1 185 KKGVEFFQETPRNFNFFLYITKGAVEINGVV--YPKYSTVFFDtDGDSIKGKSAAdEETEFAIIGGLILDQPILQHGPFVETDRESLLQVFKNYQYC 279
                 57899*************************6..9****************999887999***********************************976 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.4   4.3e-07    0.0026       9      52 ..      54      98 ..      47     104 .. 0.89
   2 ?   -3.5   0.1       1.5   8.9e+03      22      32 ..     201     211 ..     201     214 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.3e-07
                EEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT CS
     Cupin_2  9 esapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpag 52
                + +p h H+g++ + yVl G ++ +   g + +l++Gd+ +  ag
  CCD23922.1 54 AGFPDHPHHGQETITYVLNGMIAHEdFTGSKGVLRPGDLQFMTAG 98
                5789*********************9*************999988 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.5
                 EEEEEESEEEE CS
     Cupin_2  22 ffyVleGegel 32 
                 f+y+ +G +e+
  CCD23922.1 201 FLYITKGAVEI 211
                 78999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       315  (0.0175693); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2415.12
//
Query:       CCD23923.1  [L=580]
Description: hypothetical protein NDAI_0C02630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-146  488.7  27.1   2.6e-146  488.4  27.1    1.0  1  Alg6_Alg8  ALG6, ALG8 glycosyltransferase family


Domain annotation for each model (and alignments):
>> Alg6_Alg8  ALG6, ALG8 glycosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  488.4  27.1  1.5e-150  2.6e-146       2     484 .]      81     564 ..      80     564 .. 0.92

  Alignments for each domain:
  == domain 1  score: 488.4 bits;  conditional E-value: 1.5e-150
   Alg6_Alg8   2 lllklll..........ipmyrStDFEvqRnWlaiThslplseWytedlseWtLDYPPlfAYfeyllskvakkvldpemlalessrgyesestklFqRl 90 
                 +++++++          +pm+  +DFE+qR+W++iT+ lp+s+Wy  dl++W+LDYPPl+A+++yl++k++ ++++p++++l +srgye +++k+F+Rl
  CCD23923.1  81 IIIRCAVglgpysgfntPPMF--GDFEAQRHWMEITQYLPISQWYWFDLQYWGLDYPPLTAFHSYLCGKIG-SFFQPNWFTLGDSRGYEGQDLKTFMRL 176
                 78999999999999999****..************************************************.666************************ PP

   Alg6_Alg8  91 tVivsdlllfipavlllvek..akkkskkkkrlvllllillspgllliDhiHFQYNgvllGllllsiaallkkkdlllgallFvllLnfKqialylApa 187
                 tV++s+ l++ipav+++++   ++++++   +++++++il++p+l+liDh+HFQ+N+v+lGl+++++++ll++ +  ++a++Fvl+++fKq+aly++p+
  CCD23923.1 177 TVLASESLCYIPAVVYFTKWlgKRRNQSPIGQFIAVAAILFQPSLILIDHGHFQFNSVMLGLTVYTLNNLLDEFYA-FAAVCFVLSICFKQMALYYSPI 274
                 *****************8555555556899**********************************************.6********************* PP

   Alg6_Alg8 188 yfvylLrkyclkkskkklkvslkrllklgvvvlavfallfgPfl..as....geqlkqvlsRlFPfkRGLfedyvApNfWalynvvdkvlevvlkkaev 280
                 +f+ylL+k +++     + +++ r+++++++++ +fa +fgP++        +++l q ++R+FPf+RG+fed+vA NfW+++nv++k++         
  CCD23923.1 275 FFAYLLSKSLFH----PRLFNIPRFAAISFATICTFASMFGPIYffGGenggITNLLQSIKRIFPFARGIFEDKVA-NFWCVTNVIFKYKA-------- 360
                 *********884....5689**********************9965115678889*********************.**************........ PP

   Alg6_Alg8 281 asltrglvqdvsflvlpeilpkltllltllailpslvklllkpskklfllalvlcalsfFlfsfhVHEKaiLlvllpltllal.esredlslvlllsvv 378
                               +++e+l++++l+lt++a+lp+++ +ll+p+k l+l+al +c++sf+lfsf+VHEK+iL++llp+tll++ ++r+ ls v +++++
  CCD23923.1 361 -------------NFTQEQLQLYSLILTIIAFLPAMLVILLYPRKYLLLYALSACSMSFYLFSFQVHEKTILMPLLPITLLYTsTDRNVLSRVSWMNNI 446
                 .............9********************************************************************9556669********** PP

   Alg6_Alg8 379 gtfslfPLlfkdgellikvvltllwlllll.......lslkklvkkslkkk....................kkkvlldrleklyllsllallvllvlle 450
                 g+f+l+PLl+kdg+ l+++v+++l ++l++            +       k                     ++++++++  +++ls++++ v++ +++
  CCD23923.1 447 GLFTLWPLLKKDGLSLQYWVCLILSNWLIGnfsfitpR----FLP-----KvltpgpsiiqlgenyrrptlLPSNWIWKV--IIVLSYVMMGVIH-FVD 533
                 *****************************976533321....222.....223445777788888887766555555555..9999999888999.*** PP

   Alg6_Alg8 451 llvlkkpperlpflplllisvycsvgvfvlflll 484
                 +++  +pp+ +p+l+++l++++ ++g+fvlf+l+
  CCD23923.1 534 YFI--EPPSAYPDLWVILNCTL-GFGCFVLFWLW 564
                 ***..89***************.*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4057.45
//
Query:       CCD23924.1  [L=427]
Description: hypothetical protein NDAI_0C02640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-28   98.5   2.5    4.8e-28   98.5   2.5    2.5  2  Cyclin    Cyclin
    0.00017   21.4   0.1    0.00031   20.5   0.1    1.4  1  Cyclin_N  Cyclin, N-terminal domain
  ------ inclusion threshold ------
       0.19   11.9   4.6       0.15   12.2   0.1    2.6  2  Maf1      Maf1 regulator


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   2.5   8.1e-32   4.8e-28      15     160 ..      24     205 ..       7     206 .. 0.83
   2 ?   -0.6   0.6      0.25   1.5e+03      10      46 ..     336     377 ..     328     405 .. 0.60

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 8.1e-32
                 HHHHH--------------T...........................................................T--SS--SS-HHHHHHHHHH CS
      Cyclin  15 vanndetatasadsksnlensqkqss....................................shtkttfaqtpk..essFatkavpaisigsylsrlqk 75 
                 v+++++t   + + +s++++  +                                       + tk + ++ p      F++++ p isig+yl rl+k
  CCD23924.1  24 VNKTSNTSSDTPSTQSHSTPNVITDAenpkhvkitlpikfmecprrdlvvlisrmlvtlikiNDTKANDNNLPSnyATRFHSRVIPGISIGNYLLRLTK 122
                 3444444444445555555544433368888888888888888888888888888888888888888777765511578999999************** PP

                 HTT--HHHHHHHHHHHHHHHH..H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT- CS
      Cyclin  76 fgesaplvllgtliYldrivkrcvsealvvtsanihRllivallvatKflvDlsysnekfakvggislkELnkLEidFlflvdFd 160
                 f+ ++p vll++++Y+d ++   v   ++ +s+++hR++++a+ va+K l+D++ s  ++ak gg++ +EL  LE  Fl+l+ ++
  CCD23924.1 123 FCILQPSVLLTAVYYIDLLSA--VFPSFSFNSLTAHRFILTAVIVASKSLCDSCLSITHYAKYGGVQPNELLMLEAYFLKLIKYR 205
                 *********************..99********************************************************9997 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.25
                 HHHHHHHHHH--------------T................. CS
      Cyclin  10 lldrlvanndetatasadsksnlensqkqss.....shtktt 46 
                  l++++ n + +  +  d+++  +n qk ss     +++ tt
  CCD23924.1 336 ALSSTISNDSMSNSSYGDQPNLGSNIQKESSavdnvQNNTTT 377
                 566666666666666666666667777777766644222222 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   5.3e-08   0.00031      36     126 ..     115     206 ..     110     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.3e-08
                 HHHHHHHHHTT--TTHHHHHHHHHHHHHHHS.---CC..CHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N  36 dwlvevaekfkltpetlflavnyldRflskk.svpkd..klqlvgatcLllAaKveeisppkledlvyitdeafteeeilemErliLetLnfdl 126
                 ++l+++++   l+p++l++av y+d + +   s++ +  ++++  +t++++A+K   +s+ ++ +++ +  + ++ +e+l +E ++L+ +++++
  CCD23924.1 115 NYLLRLTKFCILQPSVLLTAVYYIDLLSAVFpSFSFNslTAHRFILTAVIVASKSLCDSCLSITHYAKY--GGVQPNELLMLEAYFLKLIKYRV 206
                 78999999999**************99884334444455*******************99999999999..5699*************999975 PP

>> Maf1  Maf1 regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.6e-05      0.15      55     120 ..     102     188 ..       4     241 .. 0.67
   2 ?   -0.1   1.2      0.15   9.1e+02       9      70 ..     347     416 ..     339     418 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
        Maf1  55 g.....................plsdkssrktlayLiatLnasfpdYDFsslrsseFkkekslksvinnidstLsslveekyeelre 120
                 +                      + + s   t +y i  L a+fp + F sl+ ++F     +   ++  ds Ls +   ky ++++
  CCD23924.1 102 RfhsrvipgisignyllrltkfCILQPSVLLTAVYYIDLLSAVFPSFSFNSLTAHRFILTAVIVASKSLCDSCLSITHYAKYGGVQP 188
                 155555555555555555554444455666678999************************999999999999999988888888777 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.15
        Maf1   9 sckaagsdkklykkiekeleselessskeslsls.........aaseslssssPfgplsdkssrktlayLi 70 
                 s+ ++g+  +l  +i+ke+++ + + +++++++s         ++++ ls + +  pl  +++ +tl+ L+
  CCD23924.1 347 SNSSYGDQPNLGSNIQKESSA-VDNVQNNTTTISgnnsehrmkSQHKALSPTVAYTPLMLTQESRTLSALT 416
                 555555555555566555543.2333333333333333332223444444444444788788888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3182.72
//
Query:       CCD23925.1  [L=389]
Description: hypothetical protein NDAI_0C02650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-30  106.1  14.8    1.4e-30  106.1  14.8    2.3  3  DHHC      DHHC palmitoyltransferase


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.0      0.06   1.1e+03      47      75 ..      25      53 ..      14      64 .. 0.49
   2 !  106.1  14.8   7.9e-35   1.4e-30       5     132 ..      81     208 ..      77     210 .. 0.87
   3 ?   -3.2   0.0      0.48   8.6e+03      93     111 ..     265     287 ..     244     289 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.06
        DHHC 47 NykyFllfllylllllilalvlllialvk 75
                N +yF+l  +  +   i++ + l++++v+
  CCD23925.1 25 NSHYFILSNFLSIKKQIWFQFSLSMIWVS 53
                44466544444444444433333333322 PP

  == domain 2  score: 106.1 bits;  conditional E-value: 7.9e-35
        DHHC   5 lkfCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllvls 103
                 + +C++cn ykp+rs+Hc++Cn+cvl +DHhCpw+ nc+G++N+ +F+ fl+++++ + + lv+ll    ++++ ++  ++  ++ ++ ++  +l+ + 
  CCD23925.1  81 NTHCKKCNNYKPERSHHCKTCNQCVLMMDHHCPWTMNCVGYKNFPHFIRFLMWIIITTGFLLVHLLKRTMTMWNLRHLPSYI-FDRNEIIFLTILIPMD 178
                 579*************************************************************************997666.5555556777777777 PP

        DHHC 104 llfllllgllllfhly.lilrnlTtieamk 132
                 +++ll ++ll+++ +  +i+r++T+ie+++
  CCD23925.1 179 AFILLTISLLFIRCFNnQIVRGMTQIEFWE 208
                 88888888877777765677*******997 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.48
        DHHC  93 k....llsilllvlsllfllllg 111
                       +++ +++ s++ +++++
  CCD23925.1 265 YdidiWTNMNTVMGSAFNWIWIF 287
                 23445667777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       953  (0.0531541); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2756.14
//
Query:       CCD23926.1  [L=1657]
Description: hypothetical protein NDAI_0C02660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-79  267.0   7.1    2.4e-79  267.0   7.1    3.7  4  Sin3a_C         C-terminal domain of Sin3a protein
    1.2e-43  147.1   0.1    7.9e-43  144.5   0.1    2.6  1  Sin3_corepress  Sin3 family co-repressor
    2.2e-42  142.9  14.2    4.9e-16   58.6   1.9    4.8  4  PAH             Paired amphipathic helix repeat


Domain annotation for each model (and alignments):
>> Sin3a_C  C-terminal domain of Sin3a protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1     0.056   3.4e+02      32      88 ..     258     313 ..     229     325 .. 0.57
   2 ?   -2.5   1.3      0.54   3.2e+03      26      42 ..     447     463 ..     410     507 .. 0.49
   3 ?   -3.8   0.6       1.4   8.5e+03     240     251 ..     693     704 ..     666     720 .. 0.48
   4 !  267.0   7.1     4e-83   2.4e-79       1     286 []    1233    1513 ..    1233    1513 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.056
     Sin3a_C  32 aeevkerkankvavelgldkkesealalrleseeeeeeyYsqllelveklldGeidq 88 
                 + ++++++++++   l++++  s   + ++ + +++  +Y+q+l+ ++++    id 
  CCD23926.1 258 QPQQQQSEEDPEYRPLNVKDALSYLEQVKV-QFNSQPVIYNQFLDIMKDFKSQTIDT 313
                 333333333444444444433322222222.44777788888888888887777765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.54
     Sin3a_C  26 qaeeqvaeevkerkank 42 
                 qa++q++ +++ +++n+
  CCD23926.1 447 QAQAQAQAQMQAQNQNP 463
                 12222222222221111 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 1.4
     Sin3a_C 240 kkeeeeqekaek 251
                 + ++++++++++
  CCD23926.1 693 QSQQQQAQQQAQ 704
                 111111111111 PP

  == domain 4  score: 267.0 bits;  conditional E-value: 4e-83
     Sin3a_C    1 FfaNttfYvflrlfqiLyeRLlkikqaeeqvaeevkerkankvavelgldkkesealalrleseeeeeeyYsqllelveklldGeidqsqfEdslRe 97  
                  +faNt++Yvf+r+++++yeRLl++kq++++v+ e+++rk  ++a++lgl++++ ++++l++    +++++Y++ll+l ++l++++i++++fE+slR+
  CCD23926.1 1233 LFANTNIYVFFRHWTTIYERLLELKQINDKVTREINSRKVTPFAKDLGLISTQLTMMGLDF----KTSDSYKELLNLTKRLIKNDIEHQWFEESLRQ 1325
                  6************************************************************....******************************** PP

     Sin3a_C   98 mfgikaYklfTldKliqalvkqlqtivsDekcqellelfekerskeettsqdeisyrkkaekll.kdenlfriewkseskkltiqlldkddetlddd 193 
                   +++ka+kl+T dK+iqalvk++ +i++D+k +e++ lfek+r +++tt++d+i yr +++ ++ + en+frie+++++++++iq++  +d tl+ +
  CCD23926.1 1326 AYNNKAFKLYTADKVIQALVKHANSILTDSKASEIMALFEKDRLRSSTTTRDQIIYRLQTRTHMtNTENMFRIEFNENTNHVCIQYIAVEDLTLKPS 1422
                  **********************************************************************************************999 PP

     Sin3a_C  194 eveaeerwkeYvesYvlveptegvereklkkvfLkRnlkaerkeeekkeeeeqekaekeeeaekeleveekleiriclnsyklvyvpgtedvl 286 
                    +++e w++Yv+sY+l +ptegv++e lk +fL++nl+ e +++++ ++e+++++  e+  +++++ ++kl+i+i+ ++y+l  +pg+ dv+
  CCD23926.1 1423 P-TTKETWEYYVTSYALPHPTEGVPQEGLKVPFLEKNLNLELENAQDLDNETEKNEFIEKISPEGIS-TSKLKIKIDQETYNLDVEPGSFDVF 1513
                  9.99**********************************99999888888887766666664444444.7**********************97 PP

>> Sin3_corepress  Sin3 family co-repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5   0.1   1.3e-46   7.9e-43       2      98 .]     831     926 ..     830     926 .. 0.98

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 1.3e-46
  Sin3_corepress   2 rlgpsYrlLpksyqqpkcsgrdelekevLNdewvsvptwasedsgsfkasrknqyeealfrcEderyelDmvieanrstiklleelakkiesmse 96 
                      +gpsY++Lpk+ + ++csgrd++++evLNdewv +p wasedsg f+a+rknqyee+lf++E+er+e+D++ie+n +ti++le++a+ki++m+ 
      CCD23926.1 831 AYGPSYKKLPKTDTFMPCSGRDAMCWEVLNDEWVGHPVWASEDSG-FIAHRKNQYEETLFKIEEERHEYDFHIESNLRTIQTLETIANKINNMTA 924
                     69******************************************8.***********************************************99 PP

  Sin3_corepress  97 ee 98 
                     ee
      CCD23926.1 925 EE 926
                     86 PP

>> PAH  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   1.7e-19     1e-15       2      45 .]     295     338 ..     294     338 .. 0.99
   2 !   58.6   1.9   8.3e-20   4.9e-16       2      45 .]     487     530 ..     487     530 .. 0.99
   3 !   32.5   0.3   1.1e-11   6.8e-08       2      45 .]     762     805 ..     761     805 .. 0.98
   4 ?   -1.4   0.2      0.46   2.8e+03       8      25 ..    1152    1168 ..    1151    1172 .. 0.74

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 1.7e-19
         PAH   2 vYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45 
                 +Y++FLdi++d++++ id+++V+e+Vs LF+++p L+++Fn+FL
  CCD23926.1 295 IYNQFLDIMKDFKSQTIDTPGVIERVSTLFKGYPVLIQGFNTFL 338
                 7******************************************8 PP

  == domain 2  score: 58.6 bits;  conditional E-value: 8.3e-20
         PAH   2 vYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45 
                 +Yk+FL+iL++yq+e + + eVyeqV  LF d pdLl++F+ FL
  CCD23926.1 487 IYKHFLEILQTYQREEKPISEVYEQVTVLFNDAPDLLEDFKKFL 530
                 7******************************************8 PP

  == domain 3  score: 32.5 bits;  conditional E-value: 1.1e-11
         PAH   2 vYkeFLdiLhdyqkeqidskeVyeqVskLFhdhpdLlreFnqFL 45 
                 +Y eFL++L+ y+++  +++e++++V   + ++ +L+++F++F+
  CCD23926.1 762 IYMEFLKVLNLYSQDLLSTNELVTRVDYYIGSNKELFDWFKTFV 805
                 7******************************************5 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.46
         PAH    8 diLhdyqkeqidskeVye 25  
                  d+L++y++++i ++ V+ 
  CCD23926.1 1152 DVLRKYKYQKI-KEKVIN 1168
                  89*******86.444655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3261  (0.181884); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.37u 0.33s 00:00:01.70 Elapsed: 00:00:00.51
# Mc/sec: 9712.96
//
Query:       CCD23927.1  [L=122]
Description: hypothetical protein NDAI_0C02670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.2e-24   83.8   0.0    6.9e-24   83.4   0.0    1.2  1  RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
    8.2e-08   31.6   0.0    1.8e-07   30.4   0.0    1.5  1  RNA_pol_L    RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   7.7e-28   6.9e-24       2      73 ..      31     102 ..      30     104 .. 0.95

  Alignments for each domain:
  == domain 1  score: 83.4 bits;  conditional E-value: 7.7e-28
                  EEEEEES--HHHHHHHHHHHTTSTTEEEEEEECSSTTTSEEEEEEEESTSS-HHHHHHHHHHHHHHHHHHHH CS
  RNA_pol_L_2   2 ltfeingEDhTLgnlLrhlllknpsVefagYkipHPlepkmnlriqtkssnnpleaLkkalkdlldicdele 73 
                  + +++++EDhTLgnl+r +ll++ +V fa+Yk++HP   +++lriqt+++++p+ aLk+a++++++++  l+
   CCD23927.1  31 VVITFQKEDHTLGNLIRSELLNDGKVLFAAYKVEHPFFANFKLRIQTVEGYDPKLALKNACNNIINKLGILK 102
                  5799*************************************************************9988776 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0     2e-11   1.8e-07       4      69 .]      35      98 ..      33      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 2e-11
                xxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  4 lrgvdhtlgNaLRrillsevpgvaiea.....pvvkvntdkdklilevetdgslkPeealkeAlkiLkekl 69
                ++++dhtlgN +R  ll +  +v ++a     p       + ++ l+++t+  ++P+ alk+A++++++kl
  CCD23927.1 35 FQKEDHTLGNLIRSELL-NDGKVLFAAykvehPF------FANFKLRIQTVEGYDPKLALKNACNNIINKL 98
                6899*************.8888888887666666......788*************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 921.78
//
Query:       CCD23928.1  [L=750]
Description: hypothetical protein NDAI_0C02680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-72  244.6   0.9    1.3e-72  244.3   0.0    1.6  2  Pkinase         Protein kinase domain
    1.2e-39  136.2   0.0      2e-39  135.4   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    1.2e-26   92.6   0.0    7.9e-14   51.6   0.0    2.7  2  POLO_box        POLO box duplicated region
    2.2e-09   37.1   0.0    5.6e-08   32.4   0.0    2.2  2  Kinase-like     Kinase-like
    0.00046   19.1   0.3    0.00046   19.1   0.3    2.0  2  Pkinase_fungal  Fungal protein kinase
     0.0036   17.5   0.1     0.0082   16.4   0.1    1.6  1  SH3_3           Bacterial SH3 domain
  ------ inclusion threshold ------
      0.019   14.3   0.0      0.042   13.2   0.0    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.063   13.2   0.0       0.25   11.2   0.1    2.1  2  DUF5386         Family of unknown function (DUF5386)
       0.11   12.4   0.0       0.19   11.6   0.0    1.3  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   0.0   6.6e-76   1.3e-72       1     264 []      95     350 ..      95     350 .. 0.94
   2 ?   -3.4   0.1       2.4   4.8e+03     213     257 ..     479     523 ..     464     526 .. 0.64

  Alignments for each domain:
  == domain 1  score: 244.3 bits;  conditional E-value: 6.6e-76
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 y++++ lGeG+f+++++++ +e+gki+A K+++k ++k++k+ +k+l+Ei+i+k++kh+niv+++++fe++ ++y++le++++g+l+dll++++sl+e 
  CCD23928.1  95 YRREHFLGEGGFARCFQIK-DESGKIFAAKTVAKISIKSEKTkRKLLSEIQIHKSMKHSNIVQFIDCFEDDANVYILLEICPNGSLMDLLKKRKSLTEP 192
                 677889************9.6***************999998899****************************************************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgk 194
                 e++++++qi+ +++ylHs++iiHrDlK  Ni++d++ +lK++DFGla+ l ++ + + +++gt++Y+APEvl  k++++s +vD+Ws+Gv++y ll gk
  CCD23928.1 193 EVRFFTTQICGAIKYLHSRRIIHRDLKLGNIFFDKDYNLKVGDFGLAAVLANDRErKYTVCGTPNYIAPEVLmgKHSGHSFEVDIWSIGVMIYALLVGK 291
                 **************************************************99998899**************999999********************* PP

                 -STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 195 ppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ppf++++ +     ++++    +k+    k  +p+++ +s+ea  l++++l+ +p +R+t+ +++++ ++
  CCD23928.1 292 PPFQAKDVNV----IYER----IKL---CKYGYPKDKYVSKEAEILIHDILSLNPLQRPTIIDIIDDVWF 350
                 ****444433....4444....333...36799********************************99998 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.4
                 HHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHH CS
     Pkinase 213 lekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaee 257
                   k+ ++ +e +   +++s+++++++ +l++++k + + R+  +e
  CCD23928.1 479 QRKLNNLAREARIRRAQQSNMKNSLQPMLSNVIKSEISLRILSSE 523
                 334444444777777888888888888888888888888876655 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   0.0     1e-42     2e-39       5     257 ..      99     346 ..      96     348 .. 0.87

  Alignments for each domain:
  == domain 1  score: 135.4 bits;  conditional E-value: 1e-42
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST..TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlke..eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  + lGeG f++ ++ + ++         a Kt+ +   ++e++k++ll+e++i k++kh niv+++ +  ++ +++i++e +++G+L + L+k+  ++l
   CCD23928.1  99 HFLGEGGFARCFQIKDES-----GKIFAAKTVAKisIKSEKTKRKLLSEIQIHKSMKHSNIVQFIDCFEDDANVYILLEICPNGSLMDLLKKR--KSL 189
                  568999999999887773.....3333344443211344455789**********************************************98..99* PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllw 196
                  t  ++  f++q++ +++yL+s++++Hrdl   N++ +++   k++DfGLa  +  +d+ +k +      +++apE+l+ k+   + + D+Ws Gv+++
   CCD23928.1 190 TEPEVRFFTTQICGAIKYLHSRRIIHRDLKLGNIFFDKDYNLKVGDFGLAAVL-ANDRERKYT-VCGTPNYIAPEVLMGKHsgHSFEVDIWSIGVMIY 285
                  ***************************************************99.444444444.445569*******988877999************ PP

                  HHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 197 Eiftlgespypglkneevlekl.kegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                   ++  g+ p++  + + ++e++   ++  +k +++++e   l+++ ++ +p +Rpt+ ++++
   CCD23928.1 286 ALLV-GKPPFQAKDVNVIYERIkLCKYGYPKDKYVSKEAEILIHDILSLNPLQRPTIIDIID 346
                  **99.*****************557899****************************998876 PP

>> POLO_box  POLO box duplicated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   5.6e-13   1.1e-09       1      63 [.     564     628 ..     564     629 .. 0.91
   2 !   51.6   0.0     4e-17   7.9e-14       1      63 [.     663     733 ..     663     734 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 5.6e-13
                 CTTSEEEEEETTS-EEEEETTTEEEEEETTTTEEEEE-TT--EEEEECCH...HC--HHHHHHHHH CS
    POLO_box   1 stkygigyqLsdgtvgVnFnDhtkiilspdgkavtyidrqgerstytlse...sgcpeelkkkltl 63 
                 s+k+g+ yqLs   +gV+Fn +t+++ ++d + + yi++ + r+ +   +    ++p+el++ l++
  CCD23928.1 564 SNKHGFSYQLSTEDIGVLFNNGTTVLRLADAEEFWYISY-DDREGWVAGHyllADRPRELSRHLEI 628
                 79*************************************.57777777778888999999999986 PP

  == domain 2  score: 51.6 bits;  conditional E-value: 4e-17
                 CTTSEEEEEETTS-EEEEETTTEEEEEETTTTEEEEE-TT--EEEEECCH....HC--H....HHHHHHHH CS
    POLO_box   1 stkygigyqLsdgtvgVnFnDhtkiilspdgkavtyidrqgerstytlse....sgcpe....elkkkltl 63 
                 + k+ ++++Lsdgt+++nF+Dh+k  +s+ gk vtyi++++ + ty+l e     g p+    + ++kl+l
  CCD23928.1 663 RYKQFVMFELSDGTFQFNFKDHHKFAISEGGKLVTYISPDHASLTYPLVEvlknGGIPNnpgcNFMEKLYL 733
                 5799********************************************99888855553333377777766 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.041        81       5      55 ..      86     135 ..      83     162 .. 0.77
   2 !   32.4   0.0   2.8e-11   5.6e-08     142     267 ..     190     310 ..     164     338 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.041
  Kinase-like   5 selgerertlvrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkd 55 
                  s+ + r r + r + l++g++  +f++kd+  g+ +a k     s  s+k+
   CCD23928.1  86 SLIKTRGRDYRREHFLGEGGFARCFQIKDES-GKIFAAKTVAKISIKSEKT 135
                  5667889999*******************99.8888777666655444444 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 2.8e-11
  Kinase-like 142 etiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft...aLvragt.kvvlsevekgfaPpEllgsrggytrknktkmthkldaWq 235
                   +      T q+   + +L+++ ++h +++  n+++d++  l++g+f+    L  + + k+ +  +++  aP  l+g++           ++++d W 
   CCD23928.1 190 TEPEVRFFTTQICGAIKYLHSRRIIHRDLKLGNIFFDKDYNLKVGDFGlaaVLANDRErKYTVCGTPNYIAPEVLMGKHS--------GHSFEVDIWS 279
                  3334456788889999*******************************742235544431344455666666666667644........489******* PP

  Kinase-like 236 lGlviyriwclklPltlateeakeewkfklck 267
                  +G+ iy +   k P++ +  +++ e   klck
   CCD23928.1 280 IGVMIYALLVGKPPFQAKDVNVIYE-RIKLCK 310
                  ***************9999888888.777776 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   2.3e-07   0.00046     320     399 ..     206     279 ..       8     288 .. 0.88
   2 ?   -2.0   0.1      0.57   1.1e+03     247     287 ..     408     456 ..     361     481 .. 0.53

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.3e-07
  Pkinase_fungal 320 rsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgee..HsyrhDLES 399
                     + L+   +i+HrD   +Ni +      ++ +  + D+ la  l++d++   + +  GT++++a evl+g++  Hs+  D+ S
      CCD23928.1 206 KYLH-SRRIIHRDLKLGNIFFD-----KDYNLKVGDFGLAAVLANDRE--RKYTVCGTPNYIAPEVLMGKHsgHSFEVDIWS 279
                     5688.99**************9.....7889999**********6444..45689*************97778***999866 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.57
  Pkinase_fungal 247 e..........lsskaevklkksesskkvekrsvdssvstskrsrlenrvh 287
                     +           + +++v++ k es++ ++++ +++ +  s +++++ r+ 
      CCD23928.1 408 SvtgnddngtnIEGTSNVSSSKTESNNGPSANATNTAS--SSNKPFDYRTI 456
                     02344334444333333444444444444433333333..33333444544 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   4.1e-06    0.0082      12      54 ..     574     614 ..     572     614 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.1e-06
       SH3_3  12 ssevigtl.pyGekVevleetgggeWykvrtddgteGwvssgyl 54 
                 s e ig+l ++G++V  l + ++  ++ + ++d++eGwv+++yl
  CCD23928.1 574 STEDIGVLfNNGTTVLRLADAEE--FWYI-SYDDREGWVAGHYL 614
                 667899999999***********..****.*************8 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.1e-05     0.042     102     155 ..     176     229 ..     167     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.1e-05
         Kdo 102 aqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                   +L dll+k ++l e   r    ++  +i+ lh++ + H+dl   ni+++++ 
  CCD23928.1 176 NGSLMDLLKKRKSLTEPEVRFFTTQICGAIKYLHSRRIIHRDLKLGNIFFDKDY 229
                 5689999999777888888889999*************************9875 PP

>> DUF5386  Family of unknown function (DUF5386)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00013      0.25      55     140 ..     466     553 ..     426     575 .. 0.79
   2 ?   -3.6   0.0       4.7   9.3e+03      30      59 ..     595     624 ..     593     629 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
     DUF5386  55 sefkfmdeiallkrGridkdaPkhPydrrGqeeekkke...iseesarsssslsakspalltlmgGvpeaekeykvGkdGelkvsklke 140
                 ++ k+ + i l  + ++++ a    + rr q+ ++k++   + ++  +s++sl   s   l  m+G++eae + k+G   +l++ k+k+
  CCD23928.1 466 TKNKYKEVIDLEAQRKLNNLAREARI-RRAQQSNMKNSlqpMLSNVIKSEISLRILSSECLLAMNGILEAEAQKKMGGLPKLRLPKIKH 553
                 56677777777777777777765555.666666666663443445667777888888889999**************999999999985 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.7
     DUF5386  30 aesvdipadegksPvstklslasnPsefkf 59 
                  e+  i  d+ +  v  ++ la  P e+  
  CCD23928.1 595 EEFWYISYDDREGWVAGHYLLADRPRELSR 624
                 6888899999999*********99999865 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.6e-05      0.19     165     194 ..     210     237 ..     180     241 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.6e-05
                 -EEEE-SS-SGGGEEEC..TTEEEEE---T CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfe 194
                 +++++H+Dl++gN+ +d+d +    v Df+
  CCD23928.1 210 SRRIIHRDLKLGNIFFDKDYNLK--VGDFG 237
                 789**************655544..55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 5014.97
//
Query:       CCD23929.1  [L=780]
Description: hypothetical protein NDAI_0C02690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-97  323.4   1.4    6.1e-97  323.4   1.4    3.0  3  Topoisom_I    Eukaryotic DNA topoisomerase I, catalytic core
    9.4e-96  319.4   0.4    9.4e-96  319.4   0.4    3.9  4  Topoisom_I_N  Eukaryotic DNA topoisomerase I, DNA binding fra
    2.9e-33  113.6   0.6    1.3e-32  111.5   0.6    2.3  1  Topo_C_assoc  C-terminal topoisomerase domain


Domain annotation for each model (and alignments):
>> Topoisom_I  Eukaryotic DNA topoisomerase I, catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.3       0.6   3.6e+03      96     115 ..      85     104 ..      50     118 .. 0.47
   2 !  323.4   1.4    1e-100   6.1e-97       1     230 [.     375     600 ..     375     602 .. 0.98
   3 ?   -3.6   4.6      0.89   5.3e+03       9      28 ..     675     694 ..     644     723 .. 0.52

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.6
                 GGG-EEEEEEE--HHHHHHH CS
  Topoisom_I  96 Kdsiryfntvkvdkqvyknl 115
                  +s + ++  k +k+ +k+ 
  CCD23929.1  85 SSSSQEKKVKKSKKKSKKVS 104
                 33322222222222222222 PP

  == domain 2  score: 323.4 bits;  conditional E-value: 1e-100
                 TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH---------TTS-----GGG-BGGGEEE-TT.SEEEEEEE-GGG- CS
  Topoisom_I   1 qsklkgekdfkKYekarkLkkvvekiredykkklkskeilekqlatavylidklaLrvGnekeeeeadtvGccsLrvehvklsekektitldFlGKdsi 99 
                 +s+lkg++d kK+ekar+Lk+++++ir+dy+k+lk+k +le+q ata+ylid +aLr+G+ek+eeeadtvGccsLr+ehv+l+++ +t+ +dFlGKdsi
  CCD23929.1 375 NSSLKGQNDLKKFEKARQLKDHIDTIRKDYRKRLKNKFMLERQKATAIYLIDVFALRAGGEKSEEEADTVGCCSLRYEHVTLKPP-NTVIFDFLGKDSI 472
                 589*********************************************************************************9.************* PP

                 EEEEEEE--HHHHHHHHHHHTT.--TTSBTTTT--HHHHHHHHTTTSTT--TTHHHHHHHHHHHHHHHHH..--------TTHHHHHHHHHHHHHHHHH CS
  Topoisom_I 100 ryfntvkvdkqvyknlkifckk.kkkgeevFdkintsklNkyLkelmegLsAKvFRTYnASitlqeqLkklekievdesnvaekikayneAnreVAilc 197
                 ry+++v+vdkqv+k l+if++  k++g+++Fd++++s lNk+L+++m+gL+AKvFRTYnAS t+q+qL+ +    ++e++vaek+  yn+Anr+VAilc
  CCD23929.1 473 RYYQQVEVDKQVFKDLTIFKRPpKQPGHQLFDRLDPSILNKHLQSYMPGLTAKVFRTYNASKTMQDQLDLI----PNEGTVAEKLLRYNAANRTVAILC 567
                 *********************99***********************************************8....8999******************** PP

                 T-EE-XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Topoisom_I 198 nhqrsvpkqheksmeklkkkiealkedikelkk 230
                 nhqr+v+k h++s+ek + ki++l+ ++ +lk+
  CCD23929.1 568 NHQRTVTKGHAQSVEKANMKIKELEWQKIRLKR 600
                 *************************99988875 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 0.89
                 HHHHHHHHHHHHHHHHHHHH CS
  Topoisom_I   9 dfkKYekarkLkkvvekire 28 
                 + kK + a++Lk+ v ++r+
  CCD23929.1 675 EEKKKQYAKELKTNVVELRS 694
                 22333334444444444444 PP

>> Topoisom_I_N  Eukaryotic DNA topoisomerase I, DNA binding fragment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   6.9         2   1.2e+04      76     113 ..      72     110 ..      54     145 .. 0.54
   2 !  319.4   0.4   1.6e-99   9.4e-96       1     213 []     154     372 ..     154     372 .. 0.98
   3 ?   -4.4   0.4       1.9   1.1e+04      87     119 ..     388     420 ..     382     427 .. 0.52
   4 ?   -5.1   9.9         3   1.8e+04      75     118 ..     653     696 ..     604     720 .. 0.69

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 2
                   T----GGGEE-HHHHHHHHHHHHH.HTT-----HHHHHH CS
  Topoisom_I_N  76 ekikelekcdFskikeylekekek.kkaltkeekkklke 113
                   +ki++++  +F+  ++  ek+ +k kk+ +k +kk + +
    CCD23929.1  72 QKISKIKVEEFDGSSSSQEKKVKKsKKKSKKVSKKMISD 110
                   444444444444433333332222022222222222222 PP

  == domain 2  score: 319.4 bits;  conditional E-value: 1.6e-99
                   ---S-EE----B---------TT--EEETTEEE---HHHHHHHHHHHHTTTSSGGG-HHHHHHHHHHHHHHHHHTT-......---GGGEE-HHHHH CS
  Topoisom_I_N   1 vkWktLehnGvlfppeYeplpknvklkydgkpvkLspeaEEvatfyaamletdyakkevFqknffkdfkkvlkekek......ikelekcdFskike 91 
                   +kW+tL+hnGvl+pp+Yeplp++vkl+y+gkpv+L+ eaEEva+f++amletd+ak+++Fqknff+df +vl+++        ike++kcdF+ki++
    CCD23929.1 154 IKWTTLKHNGVLLPPPYEPLPSHVKLYYEGKPVDLPLEAEEVAGFFGAMLETDHAKNPTFQKNFFTDFLHVLEQNGGtkngieIKEFTKCDFKKIFD 250
                   69**********************************************************************887776777789************* PP

                   HHHHHHHHHTT-----HHHHHHHHHHHHHHHHEEEETTEEEEEE--B----EE----TT-TTTT-EE----GGG-EEE--SSS-----STT---SEE CS
  Topoisom_I_N  92 ylekekekkkaltkeekkklkeekekleekygyalldgrkekvgnfrvepPgLfrgrGehpktGklkkrvlpedvtiNigkdakvPeppaghkWkev 188
                   y++ ++e+ +++++ ekk+++ e+ek+eeky+++ ldgrke+vgnf+vepPgLfrgrG+hpktGklk+rv+ped+++N+++da++Pe+pagh+W+ev
    CCD23929.1 251 YYDLQREATRQKSSLEKKQIRLEREKAEEKYKFCELDGRKEQVGNFKVEPPGLFRGRGAHPKTGKLKRRVQPEDIVLNLSEDAPIPEAPAGHQWGEV 347
                   ************************************************************************************************* PP

                   E--TT---SEEEE-TTT--EEEEEE CS
  Topoisom_I_N 189 vhdntvtwlaswkeningqvkyvmL 213
                   +hdntv+wla+wkeni ++ kyv L
    CCD23929.1 348 RHDNTVQWLAMWKENIFNSLKYVRL 372
                   ***********************87 PP

  == domain 3  score: -4.4 bits;  conditional E-value: 1.9
                   HHHHHHHHHHHHHHTT-----HHHHHHHHHHHH CS
  Topoisom_I_N  87 skikeylekekekkkaltkeekkklkeekekle 119
                   +k  +  ++  + +k   k  k+k   e++k++
    CCD23929.1 388 EKARQLKDHIDTIRKDYRKRLKNKFMLERQKAT 420
                   444444444445555555555555555555554 PP

  == domain 4  score: -5.1 bits;  conditional E-value: 3
                   TT----GGGEE-HHHHHHHHHHHHHHTT-----HHHHHHHHHHH CS
  Topoisom_I_N  75 kekikelekcdFskikeylekekekkkaltkeekkklkeekekl 118
                   k+k  + +++  s++ke+l+k +ekkk+ +ke k+++ e +++l
    CCD23929.1 653 KKKFMKEKELPESELKEWLDKVEEKKKQYAKELKTNVVELRSSL 696
                   22233445555678888888888888888888888776666554 PP

>> Topo_C_assoc  C-terminal topoisomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.6   2.2e-36   1.3e-32       2      70 .]     711     780 .]     710     780 .] 0.98

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 2.2e-36
  Topo_C_assoc   2 ekikklklqlkdkeenkevaLgtSkinYlDPRitvawckkhdvpiekiFsktlleKfaWAme.vdedfkf 70 
                   ++i ++++qlkdkeen ev+LgtSk+nY+DPR+ va+ckk++vpiekiF+ktl++Kf+WA+e +de+++f
    CCD23929.1 711 QRILTATIQLKDKEENSEVSLGTSKLNYIDPRLNVAFCKKYNVPIEKIFTKTLRDKFKWAIEsADENWRF 780
                   7999****************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3049  (0.17006); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.88u 0.33s 00:00:01.21 Elapsed: 00:00:00.50
# Mc/sec: 4679.43
//
Query:       CCD23930.1  [L=373]
Description: hypothetical protein NDAI_0C02700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.9e-05   21.4   0.6    0.00015   20.7   0.1    1.6  2  DUF2207         Predicted membrane protein (DUF2207)
  ------ inclusion threshold ------
      0.023   14.8   4.0       0.14   12.2   4.4    2.0  2  Transformer     Fruit fly transformer protein


Domain annotation for each model (and alignments):
>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.7e-08   0.00015     124     253 ..      43     190 ..      19     195 .. 0.82
   2 ?   -2.4   0.1      0.17   1.5e+03     314     355 ..     236     274 ..     199     277 .. 0.50

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.7e-08
     DUF2207 124 lP....seaksggdlrawlHg..ldgsttvkkddgsvtftarnlppgeglevrvlfpt..n.narktsgnkldeilkeeqk.........ntreraarl 204
                 lP    ++++s++++   +H+   ++  ++++++++vt++++++ +++ +   v  +     ++++ s ++  +i ++  +           r+++ + 
  CCD23930.1  43 LPklvtTTKTSTSSSSSSTHKatSTNVSSTSNSKSTVTTKTSSVTSQKSMPKIVSSSSssIdTSQTASVTTAPKISSTPVTipatdgnynIYRSNQLDG 141
                 447777677888888888999877777777777788888888888888887777772233367888888888888888888999999999889999999 PP

     DUF2207 205 slallillilllilllllllllliklllwkkygrepkvkevdpeYerdv 253
                 ++ +++ + l+ il+lll l++++++ +w    +e++ k ++++Y++d+
  CCD23930.1 142 TVFIAFGSCLAFILVLLLSLWAFLAFNAWNGARKEYQRKAIEEKYQYDP 190
                 9999*****************************************9886 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.17
     DUF2207 314 el.dpyEkalldlLfdkseegkslkeikkyakkskkkakkfkk 355
                 +l +     +l+lL++ks++  ++++++k+ ++   ++++f++
  CCD23930.1 236 TLySMNSASALNLLNGKSSNT-EFNSSEKTNND---LNSTFRN 274
                 224555555677777444332.23333333333...6666665 PP

>> Transformer  Fruit fly transformer protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   4.4   1.6e-05      0.14      35     129 ..      39     132 ..      31     148 .. 0.76
   2 ?   -1.4   0.0      0.24   2.1e+03     108     126 ..     304     322 ..     298     337 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.6e-05
  Transformer  35 rvrrlrkrktqstrpttshrerrtrsrsrsqsaeresrqrrr.rsrsrsrrrsdsrskssssterrrrsrsrsrysrtPkiitvyvqvPaadysya 129
                  r r+l k+ t+++  t+s+ +   ++ s   s+  +s+     +  s++ ++s  +  ssss +    s++ s  + +Pki + +v +Pa+d +y 
   CCD23930.1  39 RRRELPKLVTTTKTSTSSSSSSTHKATSTNVSSTSNSKSTVTtKTSSVTSQKSMPKIVSSSS-SSIDTSQTASV-TTAPKISSTPVTIPATDGNYN 132
                  66889999999999999999999999999998888887765415556667777777666666.44444444444.799*************98664 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.24
  Transformer 108 ysrtPkiitvyvqvPaady 126
                   + tPki t++ q+ a++ 
   CCD23930.1 304 TNSTPKIQTFPTQIIANNN 322
                  5899********9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2137  (0.119192); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 2529.11
//
Query:       CCD23931.1  [L=222]
Description: hypothetical protein NDAI_0C02710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-17   64.3   0.0    1.7e-17   63.9   0.0    1.2  1  Polyketide_cyc  Polyketide cyclase / dehydrase and lipid tran
  ------ inclusion threshold ------
       0.22   11.7   1.3        0.3   11.2   0.0    1.9  2  DUF2883         Protein of unknown function (DUF2883)


Domain annotation for each model (and alignments):
>> Polyketide_cyc  Polyketide cyclase / dehydrase and lipid transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   1.9e-21   1.7e-17       1     130 []      52     195 ..      52     195 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 1.9e-21
                     ESS-HHHHHHHHTTTGGCCSCCCCEEEEEE.SSSEE.......EEEECSTTSSCEEEEEEEEEEETTT...........EEECTTCCCCCEEEEE CS
  Polyketide_cyc   1 vpapadqvyalvadvesypeflphcssvevleeaes....glsadlevgfggltesftarvtldppee...........itfklvegdfkslegk 80 
                     ++a + ++y++   v++y++f+p+c+++ v e++ s     + a l++gf ++ e+f+  v +++               + +l + +f+s++ +
      CCD23931.1  52 IHAKPRELYDIACEVSQYSKFIPYCVESFVDERNSSnnnrPTVAGLRIGFREYDEKFVCNVNCQEVINkenkdnrsfivEADSLSQHLFDSFHSE 146
                     6899*******************************987776777*******************9999999*******99999************* PP

                     EEECTECCEEECEEEEEEEEEEEE-SSCHHHHHHHHHHHHHHHHHHHHHH CS
  Polyketide_cyc  81 Wtieslppnsggtrtkvalevdfkfaspllgalvgqvaervldellaale 130
                     W i++ p ++g++ t+v+l ++fkf+s+l+ a+   +a++v + + +a+e
      CCD23931.1 147 WLIQPHP-RRGSDFTRVELALRFKFKSRLYNAVSSIFARSVTKVVMDAFE 195
                     *******.799999********************************9996 PP

>> DUF2883  Protein of unknown function (DUF2883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3      0.72   6.5e+03      54      71 ..      40      57 ..      21      58 .. 0.58
   2 ?   11.2   0.0   3.4e-05       0.3      31      64 ..     141     175 ..     135     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.72
     DUF2883 54 ilkqrfktrafvmhykpr 71
                 +k++  t    +h kpr
  CCD23931.1 40 EFKEQKYTLHKTIHAKPR 57
                344444444455666776 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.4e-05
     DUF2883  31 psfglefrfqdtprrgknytqmhi.lkqrfktraf 64 
                  sf  e+ +q  prrg ++t++ + l+ +fk+r +
  CCD23931.1 141 DSFHSEWLIQPHPRRGSDFTRVELaLRFKFKSRLY 175
                 58999****************98647889998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1829.57
//
Query:       CCD23932.1  [L=256]
Description: hypothetical protein NDAI_0C02720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-06   26.8   0.2    3.6e-06   26.3   0.2    1.2  1  MMM1      Maintenance of mitochondrial morphology protein 1


Domain annotation for each model (and alignments):
>> MMM1  Maintenance of mitochondrial morphology protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.2     2e-10   3.6e-06     129     233 ..      20     143 ..       9     235 .. 0.69

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2e-10
                 HHHHHHHHHHGGCS-TTEEEEEEEEEE--S---EEEEEEE....................EE-TTTTSS-EEEEEEEEEEEEEEEEEEEEEEESSSSSS CS
        MMM1 129 ilksLnealnseelpdyldkikvteidlGedfPifsncrii...................keskesekkrLeakidvdlsDtltlgietkLllnyPkpl 208
                 i + L+++l+s +lp+y+ ++++t+ +lG+  P +    i                    +     + + ++  i+v+ +  l +++ + L+lnyP + 
  CCD23932.1  20 IKNQLSSYLQSISLPSYVRNLQITDFSLGKIAPKITLKEINdplqdfydalnedldsscdDDWVAPSPSDVQFLIEVEYTGDLLISLSADLVLNYPSKE 118
                 67899******************************999999**************988874455567889***************************** PP

                 EE---EEEEEEEEEEEEEEEEEE.. CS
        MMM1 209 tavLPvalavsvvrfsgtLtvslip 233
                 + +LP+++ ++ +  ++   v++++
  CCD23932.1 119 FITLPLKFGITDLGIHSLCLVAYMS 143
                 ******9988765554444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1925.92
//
Query:       CCD23933.1  [L=525]
Description: hypothetical protein NDAI_0C02730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-20   71.1   1.0    1.4e-19   70.1   0.2    2.0  2  PX          PX domain
     0.0035   17.7   1.9      0.062   13.7   0.4    2.7  2  TSNAXIP1_N  Translin-associated factor X-interacting N-termin


Domain annotation for each model (and alignments):
>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.2   1.6e-23   1.4e-19      32     111 ..     178     255 ..     146     257 .. 0.89
   2 ?   -3.1   0.0      0.84   7.5e+03      25      47 ..     472     498 ..     448     500 .. 0.53

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 1.6e-23
                 SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHH CS
          PX  32 akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrnsevlteFLe 111
                  k ++v RrYsdF++L++ Llr++p +++P+lP+k++ ++  + d+ f+ kr++gL ++++ +++hp++ n++ + +FL+
  CCD23933.1 178 PKDKSVIRRYSDFVWLQEILLRRYPFRMVPELPPKRIGSQ--NADPVFLLKRKNGLRRFINLVMKHPVFKNDDLVLTFLT 255
                 57899*******************************8766..9************************************7 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.84
                 EEEETTS....SSEEEEEEEHHHHHHH CS
          PX  25 evelktg....akewtvkRrYsdFeeL 47 
                 e+ l++     ++++ + R +++  +L
  CCD23933.1 472 ECILQEFtifqETQFMITRAFQEWMKL 498
                 344444455556777888888776666 PP

>> TSNAXIP1_N  Translin-associated factor X-interacting N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.021   1.9e+02      27      48 ..     331     352 ..     312     354 .. 0.79
   2 !   13.7   0.4     7e-06     0.062      10      81 ..     366     438 ..     359     467 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.021
  TSNAXIP1_N  27 revFedlieefkaYkdlLseIK 48 
                  ++F++li++f+ +++ L  I 
  CCD23933.1 331 DSIFNSLIKDFTNFAPKLYPIQ 352
                 469***********99887775 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 7e-06
  TSNAXIP1_N  10 klkctedgpqekrlqvyrevFedlieefkaYkdlLseIKkEYelyiahllesqreaqyl.kaklktlsessdk 81 
                  ++++ ++++e +lq+ ++  ++li +fk+Y d+L + +  +e y  +  ++++++q   + +l+ l++ + k
  CCD23933.1 366 IISTHLEKKNEITLQTIKDFSDQLIPKFKIYTDVLLSLRGLFERYRIMATNTIPQLQRHvQLNLEKLESMKGK 438
                 566677889999********************************98888888888877765455444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1093  (0.0609627); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3999.11
//
Query:       CCD23934.1  [L=368]
Description: hypothetical protein NDAI_0C02740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-46  157.7   0.0    2.9e-46  157.5   0.0    1.0  1  RTC         RNA 3'-terminal phosphate cyclase
    1.6e-32  112.1   0.0    2.7e-32  111.3   0.0    1.4  1  RTC_insert  RNA 3'-terminal phosphate cyclase (RTC), insert d


Domain annotation for each model (and alignments):
>> RTC  RNA 3'-terminal phosphate cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5   0.0   3.2e-50   2.9e-46       2     220 ..      11     337 ..      10     339 .. 0.95

  Alignments for each domain:
  == domain 1  score: 157.5 bits;  conditional E-value: 3.2e-50
                 TTTSTHHHHHHHHHHHHH---EEEESTTTTSSS-S--HHHHHHHHHHHHHHT-EEE--STT-SEEEEE------SEEEEEEESSEBHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RTC   2 gegGgqiLRtalaLsaltgkpvrIenIRanRkkPGLraqhltavrllakitnaevegaeigsteleFkPgeikageyevdigtAGsitlllqtllplll 100
                 +++G+q +R +++Ls+l+gkp++Ie+IR+   +PGL++++++++rl++ +tn++v   +   t++ +kPg i++g ++ +      ++++++++l+l++
  CCD23934.1  11 TFQGSQNFRLRIILSTLSGKPIKIEKIRSTDLNPGLKDYEVSFLRLIESVTNGSVIEISYTGTTILYKPGIITGGAHTHNCPPSKPVGYFVEPMLYLAP 109
                 689**************************9999*********************999977666*******888999999999999************** PP

                 TSSS-EEEEEEEBSBBTTS--HHHHHHTHHHHHHHHT.-EEEEEEEE--BTTTB-EEEEEEEE-.-S---EB........................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
         RTC 101 fakkpseltlkGgTnvsaapsvdylktvllpllkrfgvlelelelkkrGfypkGgGevelevepskklkpie........................... 172
                 f+kk++++ +kG+T ++++  ++ +k+ llp+l++fg+ e+ l++ krG +p+GgGev+l v      +pi+                           
  CCD23934.1 110 FSKKKFSILFKGITASHQDAGIEAIKWGLLPILEKFGCRECALHTLKRGSPPNGGGEVHLVVDSL-IAQPITmhelerptiatirgvaystrvspsmvn 207
                 *************************************999**********************654.35555566788999******************* PP

                 ...............................................................................BSS-HHHHHHHHHHHHHHT. CS
                 ...............................................................................xxxxxxxxxxxxxxxxxxx. RF
         RTC 173 ...............................................................................acvDehlqdqlilfmaLak. 191
                                                                                                a+v+++   +++++m++ k 
  CCD23934.1 208 rmidsakkvlkdiscpveitadvwrgensgkspgwgitlvaetkkgwcylteaigdagdvpedigqlvayrlleeistsAAVGRNQLALAMVYMVIGKe 306
                 **************************************************************************************************9 PP

                 ...-EEEEESS--HHHHHHHHHHHHHSS-EE CS
                 ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RTC 192 ..gksrirvaeltlhtetairvieqflgvkf 220
                   g+ ri+  e+++ +++ +r i++++g+++
  CCD23934.1 307 diGRLRITKDEIDENFINLLRDIKKVFGTEV 337
                 998899999******************9875 PP

>> RTC_insert  RNA 3'-terminal phosphate cyclase (RTC), insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.3   0.0   3.1e-36   2.7e-32       2     103 .]     185     284 ..     184     284 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.3 bits;  conditional E-value: 3.1e-36
                 S----SEEEEEEEEESS-THHHHHHHHHHHHHHTTTSSEEEEEEE.EE-CGGC-SS-EEEEEEEEE-T.TS-EEEEEEEE-TT--HHHHHHHHHHHHHH CS
  RTC_insert   2 drGrvkrirGvafaarvspsvanrmveaargvLnkllpdvyiytdvvkegkesgkspGfgisLvaetttegvllgaealgekgvppedvGeeaaeeLle 100
                 +r ++  irGva+++rvsps+ nrm+++a++vL+++ + v+i++d v++g++sgkspG+gi+Lvaet+ +g+++  ea+g+ g  ped+G+ +a++Lle
  CCD23934.1 185 ERPTIATIRGVAYSTRVSPSMVNRMIDSAKKVLKDISCPVEITAD-VWRGENSGKSPGWGITLVAETK-KGWCYLTEAIGDAGDVPEDIGQLVAYRLLE 281
                 78899****************************************.9********************9.5***************************** PP

                 HHH CS
  RTC_insert 101 eie 103
                 ei+
  CCD23934.1 282 EIS 284
                 *96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       321  (0.017904); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 3033.40
//
Query:       CCD23935.1  [L=775]
Description: hypothetical protein NDAI_0C02750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.8e-210  698.1  13.8   4.8e-210  698.1  13.8    2.1  2  PLA2_B          Lysophospholipase catalytic domain
  ------ inclusion threshold ------
      0.022   14.5   0.7      0.075   12.7   0.0    2.0  2  DUF3051         Protein of unknown function (DUF3051)
       0.29   11.5   7.1      0.072   13.5   2.2    2.2  2  PBP1_TM         Transmembrane domain of transglycosylase PBP1
        0.7   10.3   7.5        1.3    9.4   2.5    2.6  2  CENP-B_dimeris  Centromere protein B dimerisation domain
         10    6.5   8.7        3.3    8.0   3.8    2.3  2  DUF4611         Domain of unknown function (DUF4611)


Domain annotation for each model (and alignments):
>> PLA2_B  Lysophospholipase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.5      0.94   3.4e+03     244     274 ..     101     130 ..      71     145 .. 0.55
   2 !  698.1  13.8  1.3e-213  4.8e-210       1     490 [.     161     670 ..     161     671 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.94
      PLA2_B 244 stsmlesllkellkkllkdlsedsedisqya 274
                  ++ ++s lk++l++ ++++ ++++ is+ +
  CCD23935.1 101 LQH-IKSPLKNFLNNSFTNIPSQNNTISTST 130
                 222.444455555555555554444444443 PP

  == domain 2  score: 698.1 bits;  conditional E-value: 1.3e-213
      PLA2_B   1 iaiavSGGGyramltgaGvlkAldsRtdnat........glgGlLqsatYlaGlsGgsWlvgslavNnftsvqelsk.............k.keddsvw 77 
                 i+ia+SGGGyr+mltgaG+l+A+d+Rt+ +         +l+GlLqs+ Yl+G+sGg+Wlvg+la+Nn+ts+q++ +             + ++d+++w
  CCD23935.1 161 IGIAISGGGYRSMLTGAGILAAMDNRTNHSLsssshkkqSLAGLLQSTIYLSGASGGNWLVGTLAYNNWTSIQDILNswsnqdnnnkkddDkSNDKDIW 259
                 8**************************8765667788889***********************************76222222222111112345679* PP

      PLA2_B  78 eleksilnpeglelvknikrydeivdevekKkdagfnvsltDiwGralseklve.aeeggvnltlsslkdaekfqeaemplPiivadgrkpgetvinlN 175
                 +l++si++p+g +++k++ r+++i+d++++K++agf++sl+D+wGrals+k+++ + +gg+++t+ssl+d  +fq++emp+Pi+vadgr+pg++vinlN
  CCD23935.1 260 DLSDSIISPGGKNIFKSAMRWNHISDDLQDKQKAGFDTSLADVWGRALSYKFFPnLYRGGAAYTWSSLRDSPVFQNGEMPFPISVADGRYPGSKVINLN 358
                 ******************************************************99******************************************* PP

      PLA2_B 176 atvfEfsPyelgswdaklnsFvpveylGtklsnGtvvkkgkcvagfdnaGflmgtsstlFnevlleinsts.mlesllkellkkllkdlsedsedisqy 273
                 atvfEf+Pye+gswd++lnsF++v+ylGt +snG + + +kcv+g+dn+ f+mgtsstlFn++ll+inst+  l++++++l++++lkdls+d +d+++y
  CCD23935.1 359 ATVFEFNPYEMGSWDPSLNSFTDVKYLGTDVSNGIPRDYDKCVQGYDNTAFIMGTSSTLFNQFLLRINSTKiNLPKFITKLATHFLKDLSQDFNDVATY 457
                 ***********************************************************************999************************* PP

      PLA2_B 274 apnpfkdaeee..nqnatqsivesktLdlvdggedgqniplvpllqkerevdvifaldnsadteeswpdgvslvatyeRvleskqvkgkkfpyvpdqnt 370
                 +pnpfk+ +++  ++n ++siv+s++L+lvdgged++nipl pl+q+er++d+ifa+dns d++  wpdg+slv+t+eR++  kq++g++fpyvpd+nt
  CCD23935.1 458 HPNPFKNSKFIdkSKNFSTSIVQSDSLYLVDGGEDDENIPLLPLIQHERNLDIIFAIDNSVDMKLGWPDGSSLVHTFERQFV-KQGDGTAFPYVPDSNT 555
                 *******998844578899***************************************************************.**************** PP

      PLA2_B 371 fvnlgLnkrptffGcDarnltdlsatvdestpPlvvylpnekysylsnlstfklsykdseregliengfeaatqdnetdddefaacvacaiirRklerk 469
                 fvnlgLn++ptffGcDa+nlt+l     e++pPl+vylpn+kys+ sn+s+fk+sy++ +r+++i+ng+e+at++n+tdd+ fa+c+aca+++Rk+e++
  CCD23935.1 556 FVNLGLNEKPTFFGCDAKNLTNL-----EYIPPLIVYLPNSKYSFESNQSAFKMSYSELQRRQMISNGYEIATRNNFTDDPMFATCLACAVVKRKQESL 649
                 ***********************.....*********************************************************************** PP

      PLA2_B 470 nltlpsecekcFedycwngtv 490
                 nltlp++c++cF++ycw+g +
  CCD23935.1 650 NLTLPDHCQSCFNNYCWDGSL 670
                 ******************986 PP

>> DUF3051  Protein of unknown function (DUF3051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.1e-05     0.075      69     147 ..     376     454 ..     364     467 .. 0.90
   2 ?   -2.1   1.2      0.71   2.6e+03     135     162 ..     704     730 ..     685     739 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
     DUF3051  69 lfrtqllqyagldvfqdvarlqdflergydtfrsvlgvhlleherfvsrileqpimepdqavrlcfhyhntldhdddds 147
                 l     ++y g dv + + r  d   +gyd+   ++g      ++f+ ri    i  p    +l+ h+ + l +d +d 
  CCD23935.1 376 LNSFTDVKYLGTDVSNGIPRDYDKCVQGYDNTAFIMGTSSTLFNQFLLRINSTKINLPKFITKLATHFLKDLSQDFNDV 454
                 55556689**************************************************************999998775 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.71
     DUF3051 135 hyhntldhddddsgletdfnnlslgrpy 162
                 h  + ld +ddd   e d +++ l +p 
  CCD23935.1 704 HNDDYLDDQDDDDD-EEDEQDIDLTKPS 730
                 55556665555543.5566777777775 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.42   1.5e+03      36      46 ..     246     256 ..     235     282 .. 0.57
   2 ?   13.5   2.2     2e-05     0.072      35      67 ..     704     741 ..     692     767 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.42
     PBP1_TM  36 ddeyddeedDd 46 
                 + + dd+++D+
  CCD23935.1 246 NKKDDDKSNDK 256
                 11112222222 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2e-05
     PBP1_TM  35 yddeyddeedDdddddeeeev..prk...gkkkkpprk 67 
                 ++d+y d++dDddd+++e+++  ++    g++++ +rk
  CCD23935.1 704 HNDDYLDDQDDDDDEEDEQDIdlTKPsatGRTRNYQRK 741
                 45667778888888888887754444444444333333 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.045   1.6e+02      16      33 ..     240     257 ..     232     283 .. 0.57
   2 ?    9.4   2.5   0.00038       1.3      20      45 ..     705     730 ..     689     763 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.045
  CENP-B_dimeris  16 sdeeeeeeeedeededee 33 
                     s+++++++++d++ +d++
      CCD23935.1 240 SNQDNNNKKDDDKSNDKD 257
                     333333333333333333 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00038
  CENP-B_dimeris  20 eeeeeedeededeeddedddevpvps 45 
                     +++  +d++d+d+e+de+d ++  ps
      CCD23935.1 705 NDDYLDDQDDDDDEEDEQDIDLTKPS 730
                     34444555666666666666666666 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.26   9.5e+02      50      78 ..     240     256 ..     226     271 .. 0.52
   2 ?    8.0   3.8   0.00092       3.3      60      86 ..     704     730 ..     691     736 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.26
     DUF4611  50 veqeaqddvaaagdeeeegededdeeeek 78 
                  +q+ ++++            +dd++++k
  CCD23935.1 240 SNQDNNNKK------------DDDKSNDK 256
                 333322222............22222222 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00092
     DUF4611  60 aagdeeeegededdeeeekniknktks 86 
                 +++d  ++++d+ddee+e++i+ ++ s
  CCD23935.1 704 HNDDYLDDQDDDDDEEDEQDIDLTKPS 730
                 344444567888999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1325  (0.0739026); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 5228.30
//
Query:       CCD23936.1  [L=134]
Description: hypothetical protein NDAI_0C02760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-18   65.2   0.0    9.1e-18   64.9   0.0    1.1  1  Histone        Core histone H2A/H2B/H3/H4
    1.4e-12   47.1   0.7    2.2e-12   46.5   0.7    1.4  1  Histone_H2A_C  C-terminus of histone H2A
    0.00033   20.9   0.0    0.00047   20.4   0.0    1.2  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   1.5e-21   9.1e-18      53     131 .]      21      99 ..       8      99 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.5e-21
                 HHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  53 kyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                 ++q+s+++ + ++p+ R+ r ++ + + ++r+ ++a  +l+++lE+l++e++e+A+++ak+ K ++itp+++qlA+r++
  CCD23936.1  21 RSQSSSAKAGLQFPVGRIKRYLKRNASGKIRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGD 99 
                 78***************************************************************************75 PP

>> Histone_H2A_C  C-terminus of histone H2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.7   3.7e-16   2.2e-12       1      33 [.     100     131 ..     100     134 .] 0.92

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 3.7e-16
  Histone_H2A_C   1 EELnkLLggVTIAqGGVLPnIhkvLLpkktkkk 33 
                    +EL++L++ +TI++GGVLP+I+k+LL k +kkk
     CCD23936.1 100 DELDSLIR-ATISSGGVLPHINKALLLKIEKKK 131
                    7*******.*****************9988887 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   7.9e-08   0.00047       2      65 .]      32      96 ..      31      96 .. 0.97

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 7.9e-08
                   XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   ++P+ r+k+ +k    +  ++ + A ++++ ++e    e+++ A   +k+ k K i++ h++lA+
     CCD23936.1 32 QFPVGRIKRYLKRNaSGKIRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAI 96
                   69***********9999999*******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      222  (0.0123822); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1010.92
//
Query:       CCD23937.1  [L=630]
Description: hypothetical protein NDAI_0C02770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-09   38.6   2.7      1e-09   38.6   2.7    2.3  2  zf-RING_2     Ring finger domain
    8.8e-06   25.9   7.9    2.2e-05   24.6   7.9    1.8  1  zf-rbx1       RING-H2 zinc finger domain
    7.1e-05   22.6   4.7    7.7e-05   22.5   1.0    2.2  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    9.3e-05   22.2   7.2    0.00042   20.1   7.2    2.1  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    0.00011   22.0   0.6    0.00027   20.7   0.6    1.6  1  Prok-RING_4   Prokaryotic RING finger family 4
    0.00013   21.8   6.2    0.00045   20.1   6.4    1.8  2  zf-RING_5     zinc-RING finger domain
    0.00025   20.8   5.1    0.00025   20.8   5.1    2.3  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0021   17.6   0.4     0.0044   16.6   0.4    1.4  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
     0.0071   16.4   5.6     0.0071   16.4   5.6    2.7  2  zf-RING_UBOX  RING-type zinc-finger
  ------ inclusion threshold ------
       0.13   12.0   6.6       0.13   12.1   0.4    2.9  3  zf-RING_11    RING-like zinc finger
       0.17   12.0   3.3      0.094   12.8   1.0    1.8  2  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
       0.25   11.8   0.1       0.25   11.8   0.1    3.0  2  BNIP2         Bcl2-/adenovirus E1B nineteen kDa-interacting p
       0.31   11.2   6.8      0.051   13.7   1.7    2.4  3  zf-C3HC4_4    zinc finger of C3HC4-type, RING
        1.7    8.8   4.8         23    5.2   2.7    2.8  3  FANCL_C       FANCL C-terminal domain
        1.9    8.7   6.1       0.27   11.4   1.6    1.8  2  RINGv         RING-variant domain
        7.7    6.8   7.9        9.6    6.5   3.3    2.8  2  CTU2          Cytoplasmic tRNA 2-thiolation protein 2


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2      0.27     3e+02       2      11 ..     380     389 ..     379     397 .. 0.80
   2 !   38.6   2.7     9e-13     1e-09      10      44 .]     414     448 ..     411     448 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.27
   zf-RING_2   2 eCpICleels 11 
                  C IC+++l 
  CCD23937.1 380 VCIICMDDLL 389
                 6*****9985 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 9e-13
   zf-RING_2  10 lssadsvlllpCgHvfhreClerwlrssstCPlCr 44 
                 +++++++ +lpCgH+ h++Cl++w+++s+tCP+Cr
  CCD23937.1 414 IKKKKKPKKLPCGHFLHFSCLKNWMERSQTCPICR 448
                 6777888899************************9 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   7.9     2e-08   2.2e-05      25      55 .]     419     448 ..     379     448 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 2e-08
     zf-rbx1  25 cpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                  p++l  CgH  H+ C+++W++++++CP+cr
  CCD23937.1 419 KPKKL-PCGHFLHFSCLKNWMERSQTCPICR 448
                 34555.9***********************8 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.35   3.9e+02       2      10 ..     378     386 ..     377     391 .. 0.82
   2 !   22.5   1.0   6.8e-08   7.7e-05      16      46 ..     421     450 ..     414     453 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.35
                 GSB-TTTSS CS
  zf-C3HC4_3   2 deeCviCle 10 
                 d+ C+iC++
  CCD23937.1 378 DNVCIICMD 386
                 678999998 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 6.8e-08
                 EETTEEEEEE-HHHHHHHHHTT-B-TTT--B CS
  zf-C3HC4_3  16 vllpCgHlvlCeeCaekllkrkkkCpiCrrp 46 
                   lpCgH+ l  +C++++++r+++CpiCr +
  CCD23937.1 421 KKLPCGHF-LHFSCLKNWMERSQTCPICRLD 450
                 568*****.********************66 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   7.2   3.7e-07   0.00042      12      41 .]     416     447 ..     381     447 .. 0.75

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 3.7e-07
                 E.....E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  12 n....elleCkHsfCskCirkilksrkkvkCPlC 41 
                 +    + l+C+H ++++C++++++  ++++CP+C
  CCD23937.1 416 KkkkpKKLPCGHFLHFSCLKNWME--RSQTCPIC 447
                 0444569*****************..8999**** PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.6   2.4e-07   0.00027       8      40 ..     417     451 ..     411     456 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.4e-07
  Prok-RING_4   8 ekkailepCgHlvCkeCfdsk..dlssCPlCqrri 40 
                  +kk+   pCgH +  +C++++   +++CP+C+  +
   CCD23937.1 417 KKKPKKLPCGHFLHFSCLKNWmeRSQTCPICRLDV 451
                  5666778**************75555*****9665 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       3.6     4e+03      35      42 ..     377     384 ..     372     386 .. 0.74
   2 !   20.1   6.4     4e-07   0.00045       9      43 ..     411     448 ..     380     449 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.6
   zf-RING_5  35 keavCpiC 42 
                 +++vC iC
  CCD23937.1 377 SDNVCIIC 384
                 46789999 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 4e-07
   zf-RING_5   9 l...skeekfyltsCgHifCekClkkllekeavCpiCr 43 
                 +   +k++k+  ++CgH+++ +Clk+ +e++++CpiCr
  CCD23937.1 411 YlniKKKKKPKKLPCGHFLHFSCLKNWMERSQTCPICR 448
                 255578888999*************************8 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.3      0.21   2.4e+02       2       9 ..     381     388 ..     380     396 .. 0.83
   2 !   20.8   5.1   2.2e-07   0.00025      16      40 .]     423     447 ..     416     447 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.21
  zf-C3HC4_2   2 CpiCldml 9  
                 C iC+d l
  CCD23937.1 381 CIICMDDL 388
                 ******87 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 2.2e-07
  zf-C3HC4_2  16 tpCgHvfCqkCilrsLeekneCPlC 40 
                  pCgH  + +C++ ++e+++ CP+C
  CCD23937.1 423 LPCGHFLHFSCLKNWMERSQTCPIC 447
                 59*********************** PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4   3.9e-06    0.0044      24      46 ..     425     445 ..     414     451 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.9e-06
  Zn_ribbon_17  24 CeHvlHasCarewfenddlaeCp 46 
                   C+H lH+sC+++w e  +   Cp
    CCD23937.1 425 CGHFLHFSCLKNWMERSQ--TCP 445
                   **************9988..887 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       3.9   4.3e+03      22      34 ..     171     185 ..     171     188 .. 0.67
   2 !   16.4   5.6   6.3e-06    0.0071       1      39 []     381     445 ..     381     445 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.9
  zf-RING_UBOX  22 reCl.w.elsksleg 34 
                   ++Cl w ++ +++++
    CCD23937.1 171 QNCLtWdDINFWKNN 185
                   68**87866666554 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 6.3e-06
  zf-RING_UBOX   1 CpIClelft.............................dPlvlpCGHtFCreClwelskslegafkCP 39 
                   C IC++++                              +P++lpCGH ++ +Cl   +++ e++ +CP
    CCD23937.1 381 CIICMDDLLpsletlehatnvssttpssnhylnikkkkKPKKLPCGHFLHFSCL---KNWMERSQTCP 445
                   5566643333555555666666666666666667777789558***********...99********9 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.4      0.15   1.7e+02       2      10 ..     381     389 ..     381     394 .. 0.85
   2 ?   12.1   0.4   0.00011      0.13       9      29 .]     414     434 ..     412     434 .. 0.88
   3 ?   -1.5   0.0         2   2.3e+03       2      12 ..     444     455 ..     444     462 .. 0.62

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.15
  zf-RING_11   2 CsICLeefk 10 
                 C IC++++ 
  CCD23937.1 381 CIICMDDLL 389
                 9*****976 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00011
  zf-RING_11   9 fkpgqalfilpCsHtFHfkCI 29 
                 +k++++   lpC+H  Hf C+
  CCD23937.1 414 IKKKKKPKKLPCGHFLHFSCL 434
                 788888999***********5 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2
  zf-RING_11   2 CsIC.Leefkpg 12 
                 C IC L+ f ++
  CCD23937.1 444 CPICrLDVFDKN 455
                 99**55555554 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       8.1   9.1e+03      20      27 ..     377     384 ..     365     387 .. 0.80
   2 ?   12.8   1.0   8.4e-05     0.094      52      79 ..     425     449 ..     421     455 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 8.1
                 SSSB-TTT CS
  zf-ANAPC11  20 sddvcGic 27 
                 sd+vc ic
  CCD23937.1 377 SDNVCIIC 384
                 58999999 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 8.4e-05
                 TS-EEEHHHHHHHHHHHSTSSB-TTTSS CS
  zf-ANAPC11  52 ckhnfhlhcilkwletetskglcpmcrq 79 
                 c h +h  c+ +w+e++   + cp+cr 
  CCD23937.1 425 CGHFLHFSCLKNWMERS---QTCPICRL 449
                 9*************986...57****96 PP

>> BNIP2  Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00022      0.25      13      57 ..     254     296 ..     196     306 .. 0.81
   2 ?   -2.5   5.1       5.9   6.6e+03      21      63 ..     360     417 ..     343     624 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00022
       BNIP2  13 sldqsesdsdlsqflasvtpddissledsldinvDdletpsdeds 57 
                 + +q  +++++    a++t++d+++++  ldi++Dd e ++de +
  CCD23937.1 254 QQQQIRQNNLIN--RAQTTQNDENEINIGLDIDIDDDEEDDDETF 296
                 444444444444..566779999999999***********99755 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.9
       BNIP2  21 sdlsqflasvtpddissledsl.dinvDdl...............etpsdedslevpet 63 
                 + l ++l ++tpdd ++  d++  i +Ddl                tps +  l++ ++
  CCD23937.1 360 QKLESALPNMTPDDLQHS-DNVcIICMDDLlpsletlehatnvssTTPSSNHYLNIKKK 417
                 555556666666666664.5555666666666666665555555544444444443333 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       9.7   1.1e+04       5      13 ..     193     201 ..     193     201 .. 0.88
   2 ?   -2.5   0.1       5.3     6e+03      21      26 ..     381     386 ..     377     394 .. 0.66
   3 ?   13.7   1.7   4.6e-05     0.051       9      42 .]     418     447 ..     416     447 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 9.7
  zf-C3HC4_4   5 ldYLekPvs 13 
                 ++YL +P+s
  CCD23937.1 193 MNYLINPIS 201
                 68*****97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.3
  zf-C3HC4_4  21 ClsCis 26 
                 C+ C++
  CCD23937.1 381 CIICMD 386
                 555544 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 4.6e-05
  zf-C3HC4_4   9 ekPvsleCGhsfClsCisslqkepdgeqllCplC 42 
                 +kP  l+CGh   +sC++++++ ++    +Cp C
  CCD23937.1 418 KKPKKLPCGHFLHFSCLKNWMERSQ----TCPIC 447
                 5899**************9998884....59999 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.21   2.3e+02      12      54 ..     361     402 ..     356     417 .. 0.84
   2 ?    5.2   2.7     0.021        23      27      45 ..     424     442 ..     417     451 .. 0.87
   3 ?   -0.8   0.1       1.6   1.8e+03       3      14 ..     442     453 ..     440     475 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.21
                 S-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT-- CS
     FANCL_C  12 rldsgevpdisCdnekCnkkfHsaCLkeWlrslkesrqsfdvl 54 
                 +l ++++p+++ d+ + + ++ + C+ + l sl++ ++  +v+
  CCD23937.1 361 KL-ESALPNMTPDDLQHSDNVCIICMDDLLPSLETLEHATNVS 402
                 55.78899999999999999*********99999998888776 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.021
                 T----B-SGGGHHHHHHHH CS
     FANCL_C  27 kCnkkfHsaCLkeWlrslk 45 
                  C++  H +CLk+W++  +
  CCD23937.1 424 PCGHFLHFSCLKNWMERSQ 442
                 599***********98765 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.6
                 -S-SSS--SS-T CS
     FANCL_C   3 veCgiCyayrld 14 
                   C+iC    +d
  CCD23937.1 442 QTCPICRLDVFD 453
                 578888766553 PP

>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       8.2   9.2e+03       1       5 [.     381     385 ..     375     387 .. 0.63
   2 ?   11.4   1.6   0.00024      0.27      25      48 .]     427     447 ..     417     447 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8.2
                 ETTTT CS
       RINGv   1 CriCl 5  
                 C iC+
  CCD23937.1 381 CIICM 385
                 55565 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00024
                 CSB-HHHHHHHHHHTCT-SB-TTT CS
       RINGv  25 klvHesClekWldekeantqCeiC 48 
                 +++H sCl++W++    +++C iC
  CCD23937.1 427 HFLHFSCLKNWMER---SQTCPIC 447
                 689*********99...999***9 PP

>> CTU2  Cytoplasmic tRNA 2-thiolation protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.3    0.0086       9.6      31      79 ..     412     481 ..     348     503 .. 0.66
   2 ?   -2.9   0.1       6.9   7.7e+03      78      90 ..     583     586 ..     555     600 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0086
        CTU2  31 Lvknksseeae...............letsekCalCglplddkake......wkrtitiselseteseee 79 
                 L+ +k+++ ++               +e+s++C++C+l++ dk+ +       +++++++++s+ +++e+
  CCD23937.1 412 LNIKKKKKPKKlpcghflhfsclknwMERSQTCPICRLDVFDKNGNvkvypnTNTNTNVNDSSHDQTSEN 481
                 44444443333788888888888888999***********555555345444333333333333322222 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 6.9
        CTU2  78 eekeelekakeee 90 
                 ++         ++
  CCD23937.1 583 NN---------SN 586
                 11.........11 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1435  (0.0800379); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4184.78
//
Query:       CCD23938.1  [L=399]
Description: hypothetical protein NDAI_0C02780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.5e-116  387.2   2.3   5.9e-116  386.8   2.3    1.1  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain
  ------ inclusion threshold ------
       0.16   12.8   0.0       0.41   11.5   0.0    1.6  1  DUF4744         Domain of unknown function (DUF4744)


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.8   2.3  6.6e-120  5.9e-116       1     279 []      85     353 ..      85     353 .. 0.98

  Alignments for each domain:
  == domain 1  score: 386.8 bits;  conditional E-value: 6.6e-120
                     TT-TTS-SSHHHHHHHHHHHCT---GGGS-GHHHHHHHHSTS-HHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCBSSHHHHHHHHHHHHHHHHH CS
  Ribonuc_red_sm   1 rfvlfpikypeiwelykkleanfWtpeevdlskDlkdwkekLsedekefikkvlaflalldtivnenlverllsevqipearafygfqaamEniH 95 
                     r +lfpiky+eiw++yk++ea+fWt+ee+dlskDl+dw+++++ +e+ fi++vlaf+a++d+ivnenlve+++ evqipearafygfq+++EniH
      CCD23938.1  85 RHTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWNNRMNANERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEARAFYGFQIMIENIH 179
                     5689******************************************************************************************* PP

                     HHHHHHHHHHHT.-HHHHHHHHCHHHH-HHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSSHHHHHHHHHHHHH CS
  Ribonuc_red_sm  96 aesYsllletlvkdekekdelfnaieenpalqkkaewikkwyeskkdeekfaerlvafallegilfysgFaailwlkkrgllpglaeiielilrD 190
                     +e+Ysll++t++kd+ke + lfnaie++p++++kaew+ +w++++++  +f erlvafa++egi+f+++Fa+i+wlkkrgl+pgl++++eli+rD
      CCD23938.1 180 SETYSLLIDTYIKDPKESEFLFNAIETIPQIKEKAEWALRWINDSES--PFGERLVAFAAIEGIFFSGSFASIFWLKKRGLMPGLTFSNELICRD 272
                     *******************************************8775..8********************************************* PP

                     HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.BTTCHHHHHHHHHHHHHHHHHHCTT---SS-TT---C CS
  Ribonuc_red_sm 191 eglHtdfagllfkelkeenelenkeleeeveelikeavelEkefitdalpvellglnkedvkqYieyvadrllmnlgyeklYnveeenP 279
                     eglHtdfa+llf +lk++         ++ve +i +ave+Ek++  dalpv llg+n+++++qY+e+vadrll+++g ek+Y+v  enP
      CCD23938.1 273 EGLHTDFACLLFAHLKHK------IEPSTVETIIVQAVEIEKRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNEKYYKV--ENP 353
                     ***************555......8899********************************************************..898 PP

>> DUF4744  Domain of unknown function (DUF4744)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.6e-05      0.41      38      59 ..     172     193 ..     155     195 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.6e-05
     DUF4744  38 aesepnkpsssFdlaidnYLKD 59 
                 +  + n  s +++l+id+Y+KD
  CCD23938.1 172 QIMIENIHSETYSLLIDTYIKD 193
                 55678899*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2841.44
//
Query:       CCD23939.1  [L=205]
Description: hypothetical protein NDAI_0C02790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-18   65.4   1.0    5.5e-18   65.0   1.0    1.1  1  HSP20       Hsp20/alpha crystallin family
    0.00019   20.9   0.0    0.00043   19.8   0.0    1.7  1  ArsA_HSP20  HSP20-like domain found in ArsA


Domain annotation for each model (and alignments):
>> HSP20  Hsp20/alpha crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   1.0   6.1e-22   5.5e-18       1     101 [.      87     197 ..      87     198 .. 0.93

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 6.1e-22
                 E--SSEEEEEEEEE-TT--.CCCEEEEEETTE..EEEEEE--.....---TT----SS---EEEEEE--ST..TB-TTT-EEEEETTEEEEEEEBSS-- CS
       HSP20   1 dikeeeeefevkldvpglk.keelkvkvednr..vlvkgehe...eeeedekglikerssrkFsrkftLPe..nvdadkvkaslkdGvLtvtvpkkepe 91 
                 di ++++++e+k+++pg++ k+++ +++++n+   +++ge +   +ee ++++ ++er+s+kF+r++tLPe   ++ ++ ka++  G+Lt++vpk +p 
  CCD23939.1  87 DILDHDNNYEIKVNIPGVRqKKNISLEYNKNKnqFSISGEIPpiiTEERSGNVRVQERASGKFRRSVTLPEypKINVEQAKADYTSGILTLEVPKVKPS 185
                 6899**************96779***99987666*************************************999*********************9998 PP

                 ....-------- CS
       HSP20  92 kk..kkerkiqi 101
                  +  +++r+i+i
  CCD23939.1 186 DAdkEQVRRIEI 197
                 7677899***98 PP

>> ArsA_HSP20  HSP20-like domain found in ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.8e-08   0.00043       1      60 [.      92     176 ..      92     179 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.8e-08
  ArsA_HSP20   1 ddeyvlkldLPfv.dkeeidlsrs..gdeLtIkig.....................nfrRqitLPs..vlarkevtsAkfedgvLe 60 
                 d++y++k+++P+v +k++i+l+ +   ++ +I+ +                     +frR++tLP+  +++ +++ +A +  g L+
  CCD23939.1  92 DNNYEIKVNIPGVrQKKNISLEYNknKNQFSISGEippiiteersgnvrvqerasgKFRRSVTLPEypKINVEQA-KADYTSGILT 176
                 789**********888899997554499*************************************8435777766.8888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1501.19
//
Query:       CCD23940.1  [L=471]
Description: hypothetical protein NDAI_0C02800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-43  148.9   0.0      2e-43  148.2   0.0    1.4  1  DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
    8.7e-37  126.1   0.0    1.6e-36  125.3   0.0    1.5  1  DNA_pol_D_N  DNA polymerase delta subunit OB-fold domain


Domain annotation for each model (and alignments):
>> DNA_pol_E_B  DNA polymerase alpha/epsilon subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2   0.0   2.2e-47     2e-43       1     210 [.     206     428 ..     206     429 .. 0.93

  Alignments for each domain:
  == domain 1  score: 148.2 bits;  conditional E-value: 2.2e-47
                  EEEEES--S-TT---....-HHHHHHHHHHH.....HTT--SEEEEES-SSBTTSHHHHHT---S--SSHHHHHHHHTHHHHTTS-TTSEEEEE--TT CS
  DNA_pol_E_B   1 vvivsglnldndnrs....leaLrkiLqgya....peesppdvlilaGnfvdaahkaiasskvstdekkenfdalalllsilesllekttvvlvPgpn 90 
                  v++vsg+n+++++      l++L+++L+g      +  s++  li++Gn+vd ++ +++ ++          ++la++ ++l + l++++++l+Pg +
   CCD23940.1 206 VALVSGININSKSPGhalrLQLLQEYLMGRLdsndERVSKIGKLIICGNSVDFNAREETPGD--------LANSLAEFGKFLGNSLQSISIDLMPGVK 295
                  789*******777779999***********9998777899************9999996665........5799************************ PP

                  BTT-S-SBSB----TTTTT--TTT.........EEE--BSEEEEETTEEEEE--S-HHHH---EEESHHHH........HS-HHHHHHHHHHHHTBS- CS
  DNA_pol_E_B  91 DpanstvlPqqPlprlllsrikrvfk......elklvtNPsrielnsvevvltsddivkdlkreslkesnt........dverlrklvktildqrhla 174
                  Dp  + +lPqqP++++l+s+  r +        l+lvtNP+++ +n+v+++++s++ v+d+ ++++  +n+        d+e+ ++l++++++++++a
   CCD23940.1 296 DPSAR-ALPQQPFNKALFSEALRPYFdkvnnkLLNLVTNPYQFNINDVDLLTVSGQSVNDIHKYVIPMKNNsldetpkeDIEHRLDLMECTMKWQNIA 392
                  *****.**********999876655558888899**************************************************************** PP

                  --SS.--B-GGGGGGGB-GGG---SEEE---SS--EE CS
  DNA_pol_E_B 175 Plap.tlrpvswdkddalvleplPdvlvlpdelpeFa 210
                  P+ap t++++++++ d++vl+++P+v+++++ +pe++
   CCD23940.1 393 PTAPdTVWCYPFKEEDPFVLKEWPHVYIVAN-QPEYG 428
                  *******************************.99986 PP

>> DNA_pol_D_N  DNA polymerase delta subunit OB-fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   0.0   1.8e-40   1.6e-36       1     130 []      46     183 ..      46     183 .. 0.93

  Alignments for each domain:
  == domain 1  score: 125.3 bits;  conditional E-value: 1.8e-40
  DNA_pol_D_N   1 QYaniYfaRleqlkprlleaakekw.......skeelkvnrildlkegeecivvGtiykemklkpsvlkeiakedesapqaerkkyvse..kdellLE 89 
                  Q+++iY++Rl + k+r+++++ ++w        ++++k +++ld++ +e c+++Gtiy+emk+kp++l+e++ +d+   ++  k+y++   +de++LE
   CCD23940.1  46 QFYHIYKYRLDTFKERVTKECVKRWdngfklkGRSVIKKEKVLDIQGNEPCWCIGTIYCEMKYKPNILEEVT-NDTYGAPDIVKSYTDLegSDEIMLE 142
                  9************************9999998666888**********************************.566666677788887557******* PP

  DNA_pol_D_N  90 DesgrvrLsgsgieseklvtGvvvavlGvetengdfeVedi 130
                  Desgrv L+g+ i+s+ ++tG+v+++lG+e++ g+f+V di
   CCD23940.1 143 DESGRVLLVGDYIRSTPFITGTVIGILGMEADAGTFQVLDI 183
                  **************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3475.14
//
Query:       CCD23941.1  [L=66]
Description: hypothetical protein NDAI_0C02810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1810  (0.100954); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.28s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 468.33
//
Query:       CCD23942.1  [L=331]
Description: hypothetical protein NDAI_0C02820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2520.23
//
Query:       CCD23943.1  [L=977]
Description: hypothetical protein NDAI_0C02830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-09   35.0   0.2    1.9e-08   33.8   0.2    1.8  1  SH3_1     SH3 domain
      2e-08   33.8   0.0    4.4e-08   32.7   0.0    1.6  1  SH3_2     Variant SH3 domain
    1.9e-07   30.8   0.3    5.7e-07   29.3   0.3    1.9  1  SH3_9     Variant SH3 domain


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.2   3.2e-12   1.9e-08       1      47 [.      11      59 ..      11      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 3.2e-12
                EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTS...TEEEEEE CS
       SH3_1  1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgt...gkeGliP 47
                +A ++Y+   +d+L+f+k+ vi+v + ++d+W+ g+++++     eG++P
  CCD23943.1 11 VAQFPYQSGYEDDLNFEKDQVITVTSIEDDEWYYGEYNDGthvL-EGIFP 59
                79*************************************97744.99999 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   7.3e-12   4.4e-08       2      56 ..      10      65 ..       9      66 .. 0.92

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 7.3e-12
                EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE.CCCE...EEEEGCGEEE CS
       SH3_2  2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev.gGrv...GlfPsslvee 56
                v+a + y + +++ L+f+k++vi v+   s ++d+w++ge+ +G+    G+fP s+v++
  CCD23943.1 10 VVAQFPYQSGYEDDLNFEKDQVITVT---SIEDDEWYYGEYnDGTHvleGIFPKSFVAV 65
                7899999999****************...99999*****99888888**********97 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.3   9.5e-11   5.7e-07       1      49 []      12      64 ..      12      64 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 9.5e-11
       SH3_9  1 AlypyepreddeLsLqrGDvitvieesedgWlegs.ltG...rtGlvPanyve 49
                A +py+   +d L +++++vitv + ++d W++g+ ++G     G +P+++v+
  CCD23943.1 12 AQFPYQSGYEDDLNFEKDQVITVTSIEDDEWYYGEyNDGthvLEGIFPKSFVA 64
                679*********************999********557766789*******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2267  (0.126443); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.49
# Mc/sec: 6032.97
//
Query:       CCD23944.1  [L=628]
Description: hypothetical protein NDAI_0C02840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-06   26.0   2.9     0.0054   16.7   1.4    3.0  2  Sad1_UNC  Sad1 / UNC-like C-terminal
  ------ inclusion threshold ------
       0.12   12.7   1.0       0.28   11.5   1.0    1.6  1  Efg1      rRNA-processing protein Efg1


Domain annotation for each model (and alignments):
>> Sad1_UNC  Sad1 / UNC-like C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       1.5   1.3e+04      96     116 ..     383     403 ..     376     405 .. 0.74
   2 !   16.7   1.4     6e-07    0.0054      23     124 ..     472     608 ..     453     615 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 1.5
                 --TT----EEEEEEEE--BSS CS
    Sad1_UNC  96 leeskdilvkyvkleilsnyG 116
                 + ++k+++++y++lei s  G
  CCD23944.1 383 FSKTKSDILDYLNLEIHSLRG 403
                 566777799999999988655 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 6e-07
                 EEESS-EEEEEEEEEEEEEEEEEEE---GGGSG..-TTSB-EEEEEEESSTT---...............-EEEEEEE--TTS-SEE....EEE--TT- CS
    Sad1_UNC  23 sfkgsrgfvvieLseeiiveavtlehveksvap..isSapKdfevsgskrypekk...............wvllgefsydedgknaq....tFeleesk 100
                 + ++ ++ ++i+++e+i+++++++ h +++  +  ++SapK + v++    ++                     g++ yd+d++++      ++l ++k
  CCD23944.1 472 CKSEPSCSIAIRFKEPIYLTSLKYSHGRFTNNVhaLNSAPKIIVVYIKLHTKDAMilktfvesaykhsrsSNSEGNIFYDKDKSYIKisesVYDLANNK 570
                 4678899*******************9998877889**********98877766566555555555555544456666666666554211134444443 PP

                 --...............-EEEEEEEE--BSS-SSEEEES CS
    Sad1_UNC 101 di...............lvkyvkleilsnyGneeytcly 124
                  i               +v+ + +e+ +nyG+++yt   
  CCD23944.1 571 -ItqdlslplwftnmklPVRSIIFEVHENYGHTQYTAFG 608
                 .13556666666666666777777777777777777655 PP

>> Efg1  rRNA-processing protein Efg1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.0   3.2e-05      0.28      17     102 ..     199     283 ..     192     290 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.2e-05
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH CS
        Efg1  17 kLpaevreekereLkaleaeleeaekkekekklakkYhkvrFfErkKatRklkrlkkqleeledeeekeelekkleelevdlnYvl 102
                 +L++++ +++  + ++  a + +++ ++  ++l+++ ++++    +++t  +++l+k+++++  + ++++++++l+ l+ dl+++ 
  CCD23944.1 199 NLDSTTVNAQRFKNENNSALMLQKQLDHISRELSQRNQNIKLAMNQRITILISQLEKNIKSVIPT-NEKKIAQDLDILNRDLKFIS 283
                 566666666666666666667889999999*****************************999765.789999**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1216  (0.0678231); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4465.84
//
Query:       CCD23945.1  [L=537]
Description: hypothetical protein NDAI_0C02850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.097   12.1   0.0       0.15   11.5   0.0    1.2  1  Rep_1     Replication protein


Domain annotation for each model (and alignments):
>> Rep_1  Replication protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.5e-06      0.15     110     205 ..     196     308 ..     192     333 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.5e-06
       Rep_1 110 hvllvvpksYFkk.sknYikqeeWvelwkkalkvdyepivdvravkekkkkkkke.........kaveeiakYtvkpsdl.........ekdeevleeL 189
                 h++l  + + Fk+  + Yi+ e Wv+ w  ++k   +   ++r  k++++ ++k+         +++++i+ Y  k++++           +++ ++++
  CCD23945.1 196 HIILNTQFN-FKDwCEIYIEGEGWVKAWC-VVKKKKNGNSEIRFYKNNNSLATKNlicfispekASIQDIMFYNDKNTEIigdddddvcVGNTSKFQDI 292
                 555555554.6666899***********7.5677788999*******9998876689******99***************9976666665555669999 PP

       Rep_1 190 ekalkgkRlialggll 205
                 ++ l++ R i + g++
  CCD23945.1 293 HSFLNQLRTIKVIGNI 308
                 9999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       820  (0.045736); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4285.19
//
Query:       CCD23946.1  [L=320]
Description: hypothetical protein NDAI_0C02860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.1e-103  344.6   0.1   2.5e-103  344.4   0.1    1.0  1  Thi4            Thi4 family
    2.6e-07   30.5   0.5      1e-06   28.6   0.3    1.8  2  DAO             FAD dependent oxidoreductase
    7.9e-07   28.6   0.3    2.1e-05   23.9   0.1    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    5.3e-06   26.6   0.0    1.6e-05   25.0   0.1    1.8  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    9.3e-06   25.0   0.5     0.0003   20.0   0.3    2.1  2  FAD_binding_2   FAD binding domain
    6.5e-05   23.0   0.1    0.00035   20.6   0.0    2.1  2  NAD_binding_9   FAD-NAD(P)-binding
    0.00054   19.4   0.0    0.00074   19.0   0.0    1.2  1  FAD_oxidored    FAD dependent oxidoreductase
    0.00067   18.8   0.1    0.00085   18.5   0.1    1.2  1  Lycopene_cycl   Lycopene cyclase protein
     0.0018   17.1   0.2      0.003   16.3   0.2    1.3  1  HI0933_like     HI0933-like protein
     0.0033   16.7   0.0     0.0061   15.9   0.0    1.4  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.023   14.3   0.0      0.039   13.5   0.0    1.3  1  EF_assoc_1      EF hand associated
      0.023   13.8   0.4      0.059   12.4   0.2    1.6  2  GIDA            Glucose inhibited division protein A
      0.059   12.5   0.0      0.097   11.8   0.0    1.2  1  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
       0.16   10.8   0.1       0.23   10.3   0.1    1.1  1  Trp_halogenase  Tryptophan halogenase


Domain annotation for each model (and alignments):
>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.4   0.1  1.9e-106  2.5e-103       1     235 []      44     300 ..      44     300 .. 0.98

  Alignments for each domain:
  == domain 1  score: 344.4 bits;  conditional E-value: 1.9e-106
                 HHHHHHHHHHHHHHHTEEEEEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TTTTTTSTTBSEEEEETTTHHHHHHTT---EEESSEEEESEHHH CS
        Thi4   1 sraiveryfedllkyaesDvvivGaGssGLtaayylakk.pdlkvailersvspGGGawlGGqlfsaivvrkpakelLdelgikyedegdyvvvkdaal 98 
                 sra+++ry++d++kya sDvvivGaGssGL+aay++ak+ pdlk+ai+e++++pGGG w  Gql sa+v+rkpa++lL+e+g++yed+gdyvvvk+aal
  CCD23946.1  44 SRAMTSRYYQDMDKYAISDVVIVGAGSSGLSAAYVIAKNrPDLKIAIIEQNLAPGGGCWVSGQLLSAMVLRKPADLLLKEIGVEYEDQGDYVVVKHAAL 142
                 8************************************************************************************************** PP

                 HHHHHHHHHHTSTTEEEEESEEEEEEEEET...B.TEEEEEEEEEHHHHTCTTTSS.-B-EEEEEE...............EEEE--GSSSTTTTHHHH CS
        Thi4  99 ftstllskvlqlanvkllnavaveDlivre...g.egvaGvvinwtlvelahdtqscvDPlvirak...............vvvdatGhdgeivavvvk 178
                 ftst+lsk+l+ +nvkl+n+++veDl++++   g  +v+Gvv+nwtlv+lahdtqsc+DP+vi+ +               v++++tGhdg+++a+++k
  CCD23946.1 143 FTSTILSKILAFPNVKLYNGTCVEDLVTKPnehGkLTVSGVVTNWTLVTLAHDTQSCMDPNVIELAgysddgsrdatqkhgVILSTTGHDGPFGAFCAK 241
                 *****************************98885689************************************************************** PP

                 HHHHCTTTS-----ECB-HHHHHHHHHHHECE..EETTEEE-THHHHHHHT-EB--SB- CS
        Thi4 179 kikleakiekvkgeksldaekaedaivkktre..vvpnlyvaGmevaevdganRmGpif 235
                 +i++ + + k++g+k+ld++ ae+ +v+++ +   v+n+y+aGme+ae++g nRmGpif
  CCD23946.1 242 RIVQLDDNMKLGGMKGLDMNSAERGVVNHAGKypGVDNIYFAGMESAELYGINRMGPIF 300
                 ***************************77655238***********************9 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.3     8e-10     1e-06       1      48 [.      62     112 ..      62     124 .. 0.84
   2 ?   -1.2   0.0      0.91   1.2e+03     143     178 ..     137     177 ..     131     199 .. 0.69

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 8e-10
                 EEEEECTSHHHHHHHHHHHHT.T...EEEEESSSSTTSSGGGSSEEEEESSS CS
         DAO   1 dvviiGGGiiGlstAyeLarr.g...VtllekgdiagsgaSgrnsgllhsgl 48 
                 dvvi+G+G  Gls+Ay  a+  +   ++++e++  +g g  + ++ ll++ +
  CCD23946.1  62 DVVIVGAGSSGLSAAYVIAKNrPdlkIAIIEQNLAPG-GGCWVSGQLLSAMV 112
                 9*****************9763589********8888.99999999998866 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.91
                 E.EHHHHHHHHHHHHHHT.T-EEEESECEEEE.EEEE..TC CS
         DAO 143 v.dpakltaalaraaeal.Gveilegtevtgl.eeed..gk 178
                 v ++a +t  +++++ a   v++++gt v++l  +++  gk
  CCD23946.1 137 VkHAALFTSTILSKILAFpNVKLYNGTCVEDLvTKPNehGK 177
                 558888999999996666269*****999998333333322 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.7e-08   2.1e-05       2      58 ..      62     130 ..      61     184 .. 0.73
   2 ?    2.6   0.0     0.051        65     247     275 ..     255     284 ..     245     287 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.7e-08
                  SEEEE--SHHHHHHHHHHHHH..TS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...........H CS
                  xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........x RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqa..gakvtlvelegtclnggcllskallgvaedaeias...........e 58 
                  dvv++G+G  Gl+aa  +a++   +k++++ +++  ++ggc++s  ll+++  ++ a            +
   CCD23946.1  62 DVVIVGAGSSGLSAAYVIAKNrpDLKIAII-EQNLAPGGGCWVSGQLLSAMVLRKPADlllkeigveyeD 130
                  8*******************545*******.9999********998888876666666555555544440 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.051
                  CCT-EEEETTEEE--TTSBES.STTEEE-G CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
  Pyr_redox_2 247 klglelderggivvdeflrtn.vpgiyaiG 275
                    gl ++++ + vv++ ++   v++iy +G
   CCD23946.1 255 MKGLDMNSAERGVVNHAGKYPgVDNIYFAG 284
                  5699**************9877*****999 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   1.3e-08   1.6e-05       1      35 [.      65     101 ..      65     120 .. 0.91
   2 ?   -3.1   0.0       7.3   9.4e+03       5      17 ..     233     245 ..     233     250 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.3e-08
                    EE--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG CS
  NAD_binding_8   1 IvGaGlsGlvaAylLaka..gfdvlllekrdrlGGra 35 
                    IvGaG sGl+aAy +ak+  ++++ ++e++  +GG +
     CCD23946.1  65 IVGAGSSGLSAAYVIAKNrpDLKIAIIEQNLAPGGGC 101
                    9****************87899**********99754 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7.3
                    SHHHHHHHHHHHC CS
  NAD_binding_8   5 GlsGlvaAylLak 17 
                    G +G+ +A ++ +
     CCD23946.1 233 GPFGAFCAKRIVQ 245
                    8899999998865 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3   2.4e-07    0.0003       1      36 [.      62      99 ..      62     118 .. 0.80
   2 ?    3.3   0.0     0.028        35     160     218 ..     161     250 ..     137     268 .. 0.65

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.4e-07
                   SEEEE--SHHHHHHHHHHHH..TTT-EEEEESSSGGGS CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaae..aGlkvavvekeqefgg 36
                   Dv+++G+G +GL+AA+ +a+    lk+a++e+  + gg
     CCD23946.1 62 DVVIVGAGSSGLSAAYVIAKnrPDLKIAIIEQNLAPGG 99
                   9*****************9963455*****99766444 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.028
                    ESEEEEEEEECTT.....EEEEEEEEET.......................TTTCEEEEEESEEEE-----GG.............GSSS CS
  FAD_binding_2 160 erteadeLivedg.....rvtGavvenp.......................esgrevrirakavvlatgGfgr...allkellgaaaeae 218
                    + t +++L+++ +      v+G+v +                         ++g++ + + ++v+l t G  +   a++ +++ ++ +++
     CCD23946.1 161 NGTCVEDLVTKPNehgklTVSGVVTNWTlvtlahdtqscmdpnvielagysDDGSRDATQKHGVILSTTGHDGpfgAFCAKRIVQLDDNM 250
                    55555555554333445555554444334445555555555555555999666666666666*******999988888888777766665 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.89   1.1e+03      88     107 ..      40      59 ..      25      63 .. 0.83
   2 !   20.6   0.0   2.7e-07   0.00035       1      47 [.      64     108 ..      64     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.89
  NAD_binding_9  88 ddfvpRalyGrYlrdlfeel 107
                    ++ v+Ra+ +rY +d+ + +
     CCD23946.1  40 EATVSRAMTSRYYQDMDKYA 59 
                    57899********9986655 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 2.7e-07
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdpsep.gagrvwrtdq.s 47 
                    +ivGaG +Gl+++  ++++   + +l+i +++++ + g g++w + q  
     CCD23946.1  64 VIVGAGSSGLSAAYVIAKN---RPDLKIAIIEQNLApG-GGCWVSGQlL 108
                    7******************...6**********75549.9***988844 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.8e-07   0.00074       1     117 [.      62     172 ..      62     192 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 5.8e-07
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAara..GakvlLveergvlGGl..ltsglvatdignkaeeqvvtgiareflerlrqrggarlkkrskwntfepevakavl 93 
                   Dvv+vG+g++G+ AA+  a++  + k +++e++   GG   ++++l+++++  k     +  + +e+  + +++g++        + +   +  ++l
    CCD23946.1  62 DVVIVGAGSSGLSAAYVIAKNrpDLKIAIIEQNLAPGGGcwVSGQLLSAMVLRK----PADLLLKEIGVEYEDQGDY------VVVKHAALFTSTIL 148
                   9**************7666443399**********9996223455544444444....2233444444444333333......11246667777888 PP

  FAD_oxidored  94 eemlaeagvtvllntrlvevekeg 117
                    ++la ++v+++ +t +++ +++ 
    CCD23946.1 149 SKILAFPNVKLYNGTCVEDLVTKP 172
                   888888888888888888777763 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   6.7e-07   0.00085       1      36 [.      62      94 ..      62     152 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 6.7e-07
  Lycopene_cycl  1 DvvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   Dvv++GaG  gls A  +++++p+lk+ +ie     
     CCD23946.1 62 DVVIVGAGSSGLSAAYVIAKNRPDLKIAIIEQ---N 94
                   9*****************************64...3 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   2.4e-06     0.003       2      43 ..      62     105 ..      61     106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
                  SEEEE--SHHHHHHHHHH..HHTT--EEEE-SSSSS-HHHHHCG CS
  HI0933_like   2 dviviGgGaAGlmaAisa..akrgkrVlllekakklgrKilisG 43 
                  dv+++G+G +Gl aA  +  ++ + +++++e++ ++g    +sG
   CCD23946.1  62 DVVIVGAGSSGLSAAYVIakNRPDLKIAIIEQNLAPGGGCWVSG 105
                  8**************9994456789********99997777777 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.7e-06    0.0061     150     190 ..      46      86 ..      32     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4.7e-06
  Pyr_redox_3 150 vkhyskvkefhkyagqkvvViGgknSavDaAlelvrkgaeV 190
                  ++ ++++++++kya  +vv++G++ S+  aA+ ++++  + 
   CCD23946.1  46 AMTSRYYQDMDKYAISDVVIVGAGSSGLSAAYVIAKNRPDL 86 
                  688999**************************999885554 PP

>> EF_assoc_1  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.1e-05     0.039      10      39 ..     170     200 ..     163     226 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.1e-05
  EF_assoc_1  10 tvtneegavtlqGwLaqWsltTll.dvkttl 39 
                 t  ne+g +t++G   +W+l+Tl  d + ++
  CCD23946.1 170 TKPNEHGKLTVSGVVTNWTLVTLAhDTQSCM 200
                 5679******************972444454 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   4.6e-05     0.059       1      21 [.      62      82 ..      62     107 .. 0.81
   2 ?   -2.1   0.0       1.2   1.5e+03      96     134 ..     142     186 ..     136     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-05
                CEEEE-SSHHHHHHHHHHHHT CS
        GIDA  1 dviViGgGhAGceAAlaaarl 21
                dv+++G+G +G+ AA+ +a+ 
  CCD23946.1 62 DVVIVGAGSSGLSAAYVIAKN 82
                79****************986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHTSTTEEEEES-.EEEEEECT.....TEEEEEEET CS
        GIDA  96 lyskevteklenepnleiieee.veelivee.....kkvkgvvte 134
                 l+ +++  k+ + pn+++ +++ ve+l+++       +v+gvvt+
  CCD23946.1 142 LFTSTILSKILAFPNVKLYNGTcVEDLVTKPnehgkLTVSGVVTN 186
                 577788888999999999998636778665567766667777776 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.6e-05     0.097       2      51 ..      60     112 ..      59     117 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.6e-05
  K_oxygenase   2 ilDligiGiGpsnLsLailleevkkelkalflerqpe...faWhpgmllegae 51 
                  i D++++G+G s Ls a  +++++ +lk+  +e++ +    +W +g ll  + 
   CCD23946.1  60 ISDVVIVGAGSSGLSAAYVIAKNRPDLKIAIIEQNLApggGCWVSGQLLSAMV 112
                  679*********************9********98642236888888887665 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00018      0.23       1      34 [.      62      94 ..      62     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
                    EEEEE--SHHHHHHHHHHHHHTTTSSEEEEEE-S CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgklevtlvese 34
                    ++vivG+G++G  aA ++ak    +l++ ++e++
      CCD23946.1 62 DVVIVGAGSSGLSAAYVIAKNR-PDLKIAIIEQN 94
                    69**********9999999999.45*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2626.47
//
Query:       CCD23947.1  [L=590]
Description: hypothetical protein NDAI_0C02870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     9e-207  687.8   0.2     1e-206  687.6   0.2    1.0  1  ILVD_EDD  Dehydratase family


Domain annotation for each model (and alignments):
>> ILVD_EDD  Dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  687.6   0.2  5.8e-211    1e-206       1     517 []      55     581 ..      55     581 .. 0.97

  Alignments for each domain:
  == domain 1  score: 687.6 bits;  conditional E-value: 5.8e-211
    ILVD_EDD   1 kpiigiansyselvpchvhlkelaeavkegveeaggvpaefntigvsDgiamgeegmrysLpsReliadsvetmleaqllDalvlisgCDKivPgllma 99 
                 k+++g+ +++++ +pc++hl +l++++++++e+a+  +++fntigvsDgi+mg++gmrysL+sRe+ia+s et++ aq++Da+++i++CDK++Pg++ma
  CCD23947.1  55 KAQVGVGSCWWSGNPCNMHLLDLNNRCSASIEKANLKAMQFNTIGVSDGISMGTKGMRYSLQSREIIANSFETIMMAQHYDANIAIPSCDKNMPGVMMA 153
                 789************************************************************************************************ PP

    ILVD_EDD 100 aarlniPaifvsgGpmeagkkk........kldlssvfeavgalaagkiseeeleeleeaacpgaGsCsgmgTAntmaclaealGlslpgsasipatsa 190
                 + r+n+P+i+v+gG++++g+ +        k+d++s+f+++g++ +++++e+e +++ e++cpg+G+C+gm+TAntma++ae+lG++lp+s+s+pa+s+
  CCD23947.1 154 MGRHNRPSIMVYGGSILPGHPTcgsskipeKIDVVSAFQSYGQYISKQFTEAERRDVVEHSCPGPGACGGMYTANTMASAAEVLGITLPNSSSFPAVSQ 252
                 ******************7744455668889******************************************************************** PP

    ILVD_EDD 191 erkelaeeagkrivelvekdlkprdiltkeafeNAivvllalGGStNavlHllAiAreagveltlddfdelsrkvpllaklkPsgkydmedlhraGGvp 289
                 ++ +++ + g+ i + +e  + prdi tk+afeNAi++ +a+GGStNavlHl+A+A++agv++t ddf+++s+k+pll ++kPsgk+ m dl ++GG++
  CCD23947.1 253 QKLAECDNIGESIKKTMELGVLPRDIFTKKAFENAITYAIATGGSTNAVLHLIAVAHSAGVKITQDDFQRISDKTPLLGDFKPSGKHVMADLLNVGGTQ 351
                 *************************************************************************************************** PP

    ILVD_EDD 290 avlkeLlkagllhgdvltvtgktlaenleeaev..keqdvirplekplskegglavLkGnLapeGavvKtsaveeellkfegpArvfdseeeaveailk 386
                 av+k L ++g++hgd++tvtg+tlae++++a+   k+qd+irpl++p++++g+l++L+G+Lap+G+v K++++e   + f+g+Arvfd+e+++++a+++
  CCD23947.1 352 AVIKFLYDNGFMHGDTITVTGDTLAERAAKAAPlpKDQDIIRPLSNPIKPTGHLQILYGSLAPGGSVGKITGKE--GTYFKGKARVFDEEDAFITALEN 448
                 ***************************988555689*************************************9..999******************** PP

    ILVD_EDD 387 gkikagd..vvviryeGPkGgpGmpEmlkptsallgkglgkkvalitDGRfSGaskglvighvsPEAaegGpialvedGDiieidiekrtlelevseee 483
                 g+ik+g+  vv+iryeGPkGgpGmpEmlkp+sal+g glgk+val+tDGRfSG+s+g++igh++PEAa+gGpi+lv+dGD i id ++++++l vseee
  CCD23947.1 449 GEIKKGEktVVIIRYEGPKGGPGMPEMLKPSSALMGYGLGKDVALLTDGRFSGGSHGFLIGHIVPEAAQGGPIGLVKDGDEIVIDSDNNKIDLMVSEEE 547
                 ******999****************************************************************************************** PP

    ILVD_EDD 484 laaRraawkp.ekkvktrgllakyaklvssaseGA 517
                 +a+R+++w + +   +trg+la y+klvs+as G+
  CCD23947.1 548 MAQRKSQWVApA-PRYTRGTLAGYSKLVSDASLGC 581
                 ********9933.3345****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       379  (0.0211389); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4190.93
//
Query:       CCD23948.1  [L=452]
Description: hypothetical protein NDAI_0C02880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-35  120.0   0.0    1.9e-34  118.9   0.0    1.6  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.0   1.1e-38   1.9e-34       1     142 [.     149     276 ..     149     277 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 1.1e-38
                      EEEE--TT--HHHHHHHHHHHHHSSES.EEEEEESSTHCSST-.SCSSTHHHHHHHHHHHTTCTTEEEEEEESEHHHHHHHTTTTEEEEEEEHH CS
  CTP_transf_like   1 lagGtFDpiHlGHlrlleqakklleed.livgvpsdeppkkkk.kplasaeeRlemlelakevdevisvdpweltrevlkklkpdklylvigad 92 
                      +a+G+FD++HlGH+++leq kk l +  li+g+psde+++k k  ++ + ++R+e+l+++++vdevi+++pw +t+e+l+k+++d  y++++++
       CCD23948.1 149 YADGVFDLFHLGHMKQLEQCKKALPNVtLICGIPSDEVTHKLKgLTVLTDKQRCETLKHCRWVDEVIEDAPWCVTPEFLEKHNID--YVAHDDI 240
                      79****************************************77*****************************************..******* PP

                      HHHHHHCHHHHHHHHHHHHHEEEEEEHTTCEEEEEEECCTTTCSHHHHHH CS
  CTP_transf_like  93 vledfsewkeleeilgnvklvvvsrpekqanvllkaekrtngiSstkire 142
                      +++++      +++++  k +++          ++ ++rtngiS+++i++
       CCD23948.1 241 PYASA----GSDDVYKPIKQAGK----------FLVTQRTNGISTSDIIT 276
                      ****9....**************..........***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1555  (0.086731); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3215.49
//
Query:       CCD23949.1  [L=172]
Description: hypothetical protein NDAI_0C02890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-28   98.2   0.1    5.8e-28   97.7   0.1    1.3  1  Rotamase    PPIC-type PPIASE domain
      1e-21   77.6   0.0    1.5e-21   77.1   0.0    1.2  1  Rotamase_3  PPIC-type PPIASE domain
    1.2e-08   34.9   2.3    2.5e-08   33.8   2.3    1.6  1  WW          WW domain
    1.7e-07   32.1   0.0    2.5e-07   31.5   0.0    1.4  1  Rotamase_2  PPIC-type PPIASE domain
  ------ inclusion threshold ------
       0.16   12.7   0.0        0.3   11.8   0.0    1.4  1  X8          X8 domain


Domain annotation for each model (and alignments):
>> Rotamase  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.1   1.6e-31   5.8e-28       1      95 [.      68     170 ..      68     172 .] 0.98

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 1.6e-31
                 EEEESSCCS.........E----HHHHHHHHHHHHCCTCCCHHHHHHHHCCC-.-CHHHCCTTEEECEETTTS-CCCHHHHCCS-CT-B-S-EEETTEE CS
    Rotamase   1 HILlkvkek.........asekeraeakakaeeileqlksgedtFeelArkySddknsakngGdlgwvekgqlppefekaafslkkGeisepvetkfGf 90 
                 HIL+k+k++         +++ ++++a++++e+i+ +l  +++tFe+lA+++S d++s k+gGdlgw+ kg+++p fekaaf+lk +++s++ve++ G+
  CCD23949.1  68 HILIKHKDSrrpashrsqNITLSKEDAIKELETIKLRLDDNKNTFESLAKERS-DCSSYKRGGDLGWFGKGEMQPSFEKAAFALKVNQVSDIVESDSGV 165
                 ****************9999*********************************.********************************************* PP

                 EEEEE CS
    Rotamase  91 hiikl 95 
                 h+ik+
  CCD23949.1 166 HLIKR 170
                 ***97 PP

>> Rotamase_3  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.1   0.0   4.1e-25   1.5e-21      12     111 ..      60     169 ..      51     171 .. 0.92

  Alignments for each domain:
  == domain 1  score: 77.1 bits;  conditional E-value: 4.1e-25
  Rotamase_3  12 akdsvkvshIlistkg..........kesrseeeakakadsllaalk.egadFaalAkeySdDpaskenGGelgwftkgqmvkeFedavfslkkgeisk 99 
                 ++  ++  hIli+ k+          + + s+e+a +  + +  +l+ +++ F++lAke Sd  +s ++GG+lgwf kg+m++ Fe+a+f+lk++++s+
  CCD23949.1  60 NPVRIRCLHILIKHKDsrrpashrsqNITLSKEDAIKELETIKLRLDdNKNTFESLAKERSD-CSSYKRGGDLGWFGKGEMQPSFEKAAFALKVNQVSD 157
                 55678889*****999****99999888999****99**********99************8.778********************************* PP

  Rotamase_3 100 vvktdfGyHiik 111
                 +v++d G+H+ik
  CCD23949.1 158 IVESDSGVHLIK 169
                 ***********8 PP

>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   2.3   7.1e-12   2.5e-08       1      31 []      15      45 ..      15      45 .. 0.97

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 7.1e-12
                X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31
                LP++W  +++++ +r Y++N+e +++qWe P
  CCD23949.1 15 LPTPWTVRYSKSKKREYFFNTESKQSQWESP 45
                8****************************88 PP

>> Rotamase_2  PPIC-type PPIASE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0     7e-11   2.5e-07      13     104 ..      73     169 ..      48     172 .] 0.84

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 7e-11
  Rotamase_2  13 nkdefskpeg.ktlelavvkdqvaaeaalalakagae.kdfaalakgnskk.....aadlgifesasnlpeelakaafalkpgevsgpvetdngyyivk 104
                 +kd+  +p+  + +++   k+ + +e++  +++ + +  +f++lak+ s++      +dlg+f + + + + ++kaafalk+++vs++ve+d g +++k
  CCD23949.1  73 HKDSR-RPAShRSQNITLSKEDAIKELETIKLRLDDNkNTFESLAKERSDCssykrGGDLGWFGKGE-MQPSFEKAAFALKVNQVSDIVESDSGVHLIK 169
                 55554.4555588999999999999999888888755377999999999998877788888**9887.999*************************998 PP

>> X8  X8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.4e-05       0.3      15      55 ..     109     150 ..     102     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.4e-05
                 HHHHHHHTTT.SSSSTT---SS.....S-SS--TTHHHHHHH CS
          X8  15 gdlldyaCge.adCtaiqangttGkYGcyspcsvkqklsyal 55 
                 +++++ + +e +dC++ +++g  G +G+ +++ + +k+++al
  CCD23949.1 109 KNTFESLAKErSDCSSYKRGGDLGWFGKGEMQPSFEKAAFAL 150
                 5667777777699***************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1264.59
//
Query:       CCD23950.1  [L=353]
Description: hypothetical protein NDAI_0C02900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-47  158.8   3.6    1.5e-34  118.7   1.4    3.1  2  Acyl_CoA_thio  Acyl-CoA thioesterase
    4.4e-36  125.4   0.0      1e-35  124.2   0.0    1.5  1  4HBT_3         Thioesterase-like superfamily


Domain annotation for each model (and alignments):
>> Acyl_CoA_thio  Acyl-CoA thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.2e-12     1e-08       3     126 ..      26     113 ..      24     123 .. 0.90
   2 !  118.7   1.4   1.6e-38   1.5e-34       4     132 .]     207     340 ..     204     340 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 1.2e-12
                    CTCCEC-.SEEEECSSSSBTTCHHHHHEECCCCCCCCTS-TTHCCCCCHHHHHTTSSSGGGGGGGGTTTSTTEEEEEEEEEEE-S--BTTS-EEEE CS
  Acyl_CoA_thio   3 kelfeleypvevrpkelkrefgGqvvaekqsllrakktvPddallhsvllaYlSDltllltalttHelledslqvsldHsvyFlrpgdlnewilyd 98 
                    + +f ++  ++++++ +k +fgG++va  qsll+++ t+P+  +++s+                              H  yF+++gd +++ily+
     CCD23950.1  26 SSKFLTKNLPAAPLG-SKGTFGGTLVA--QSLLASLYTIPKTYVPTSM------------------------------HC-YFINGGDPKNNILYH 87 
                    567888888888888.899********..******************9..............................99.*************** PP

                    EEEEEEETTEEEEEECCEE......ECTTEEEEE CS
  Acyl_CoA_thio  99 vespsasggrgLrqGriFs......tqdgklias 126
                    ve+        Lr+G++F+      +q++kli++
     CCD23950.1  88 VEK--------LRDGKNFIhrqiraYQHDKLIFQ 113
                    ***........*********************98 PP

  == domain 2  score: 118.7 bits;  conditional E-value: 1.6e-38
                    TCCEC-.SEEEECSSSS.BTT.CHHHHHEECCCCCCCC.TS-.TTHCCCCCHHHHHTTSSSGGGGGGGGT..TTSTTEEEEEEEEEEE-S--BTTS CS
  Acyl_CoA_thio   4 elfeleypvevrpkelk.ref.gGqvvaekqsllrakk.tvP.ddallhsvllaYlSDltllltalttHe..lledslqvsldHsvyFlrpgdlne 93 
                     + +l+y v++r k ++ +ef  Gq  + ++  + ++k ++P  d+++++v++aYlSD++lllt +++H+  l+ ++++vsldHs+yF++ + +n+
     CCD23950.1 207 RTSVLDYYVKIRHKVIQsKEFsSGQTTS-NHNNISSLKiITPdTDPRYNYVAFAYLSDSYLLLTLPYFHQlpLYSHKFSVSLDHSIYFHQLPLVNN 301
                    5667888888887765414553699888.777777777588888**************************************************** PP

                    -EEEEEEEEEEETTEEEEEECCEEECTTEEEEEEEEEEE CS
  Acyl_CoA_thio  94 wilydvespsasggrgLrqGriFstqdgkliasvqqeGl 132
                    wi++ +++ +++++++L+qG++F++ +g++ia+v+qeGl
     CCD23950.1 302 WIYLRIKNSRSHWDKHLVQGEYFDSNSGNIIATVSQEGL 340
                    *************************************96 PP

>> 4HBT_3  Thioesterase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.0   1.1e-39     1e-35      10     248 .]      42     341 ..      35     341 .. 0.77

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 1.1e-39
                 C..-HHHHHHHHHHHHHHT.-S.SS..EEEEEEE-S---SE.EEEEEEEEEE--SS-EEEEEEEEETTEEEEEEEEEEE---T..........---EE- CS
      4HBT_3  10 ag.yGGyvlAlalraaqrtvpdprl..hslhvyFlrpgdag.pviyhvervrdGrsfstrtvelsqggrpiftatasfgraes.....tgwe.lepaaa 98 
                 +g +GG ++A+ l a   t+p++ +   s+h+yF++ gd++  ++yhve +rdG++f +r+++++q+++ if  ++ f++++s     +    l++ + 
  CCD23950.1  42 KGtFGGTLVAQSLLASLYTIPKT-YvpTSMHCYFINGGDPKnNILYHVEKLRDGKNFIHRQIRAYQHDKLIFQSMILFSQQNSdkdhdS-LHhLDHIES 138
                 455****************9996.669****************************************************9998777642.333555555 PP

                 ------.GGGE---.............................--SSGGGSGG..TEEEE-HHT---S...............S-EEEEEEEET..... CS
      4HBT_3  99 pppvpppdeaalaad............................eaplplfrrvpgflepfeprpaegg........kpdspagpkrvrqWvrlr..... 156
                  p+ pppd+ ++aa+                            +          +++e fe      +          +s++ ++ ++ +v+ r     
  CCD23950.1 139 LPSTPPPDKYKPAASlytekimaegllqryarlsdrfkdinylK----------RQVEVFEKG----AieynfpndLFYSQRRTSVLDYYVKIRhkviq 223
                 58888888887766567888888777666665544433222220..........222222222....02222333222355556666777777666777 PP

                 ........................TTS-SSHHHHHHHHTT-....-GGGGTSS-......SB--EEEEEEEE-S--S-...EEEEEE-SEEETTEEEEE CS
      4HBT_3 157 ........................eggepahlaaLaylsDs.f..pvprvhglrldaeasgwmpsldltiyfhrepaedeWllleaetpwagdgrglve 228
                                         +++++  + a aylsDs +  ++p  h+l l   +  + +sld++iyfh+ p +++W++l+++ ++ +    lv+
  CCD23950.1 224 skefssgqttsnhnnisslkiitpDTDPRYNYVAFAYLSDSyLllTLPYFHQLPLY-SH-KFSVSLDHSIYFHQLPLVNNWIYLRIKNSRSHWDKHLVQ 320
                 7777777777777777777899866779999**********889999999999984.44.799***********664689******************* PP

                 EEEE-TT.S-EEEEEEEEEET CS
      4HBT_3 229 arlwded.GrlvAtstQeglv 248
                 ++ +d++ G+++At++Qeglv
  CCD23950.1 321 GEYFDSNsGNIIATVSQEGLV 341
                 ******99***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2660.81
//
Query:       CCD23951.1  [L=567]
Description: hypothetical protein NDAI_0C02910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-122  409.1  26.4   2.1e-122  408.7  26.4    1.1  1  DUF3533    Protein of unknown function (DUF3533)
  ------ inclusion threshold ------
      0.091   12.7   0.2       0.21   11.5   0.2    1.6  1  Fst_toxin  Toxin Fst, type I toxin-antitoxin system
        2.2    7.9   8.3        3.6    7.2   8.3    1.2  1  DUF1387    Protein of unknown function (DUF1387)


Domain annotation for each model (and alignments):
>> DUF3533  Protein of unknown function (DUF3533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.7  26.4  3.5e-126  2.1e-122       2     377 ..     144     532 ..     143     533 .. 0.95

  Alignments for each domain:
  == domain 1  score: 408.7 bits;  conditional E-value: 3.5e-126
     DUF3533   2 vlllavlilailslywGalyrrsdrlknlnvlvVneDeggseltpvvge..avaqainettssslgtwtvvnpsefke.........seeeveelvhke 89 
                  ++la+++++i+sl+wG++y++ dr++++++l+V++Deg   ++p++    ++a+a+ ++++ss+gt++++n++ f++         ++++v ++v+ e
  CCD23951.1 144 NVVLAIFAFTIFSLFWGVNYKNFDRAHKVQILAVIQDEG--ITSPNISTiiPIAAAVPTIAESSMGTYHIYNSTGFMDkfklqsndeIDAKVIHEVYGE 240
                 689************************************..33344433004556677777779*********************************** PP

     DUF3533  90 kywgaivvkenateklyaalsangassynstelleliyesgRdattvssyilpaltqleaaalakygsqllqqliqslsntaqaaqlsna..llaspia 186
                 kyw+ai++k+nat++ly+a++  +a+s+n+++++e ++ ++Rd+t++++ ilp l+++ea + ++y+s++++q++++l++ ++  +++ +  +la +++
  CCD23951.1 241 KYWFAINIKPNATQALYDAIAVPNAPSFNTSQYFEAVTITARDPTNYRQLILPLLQDFEARYSNYYTSTYFPQFLNNLTTFNNITTVNMTniALAGTMN 339
                 ********************999999****************************************************99999988766689******* PP

     DUF3533 187 fnsidlrPftdgvalaplqvgliyliiltffqfaflgklhaemglsrklkfkqllvyrllisvvslfvlSlffslvslafqvdftvafGragFvvyWmi 285
                 f ++d+r ft++v++apl vg++y+++ltffqf ++ +lh+e+  s  lk++++l+yr ++ ++++f+ Slff++vs++fq+dft afGr+gFvvyWm+
  CCD23951.1 340 FYTNDIRSFTERVLIAPLLVGVAYCLLLTFFQFLIYSQLHQEV--SALLKPNHILIYRNIMLWLTMFFASLFFCTVSAIFQIDFTPAFGRGGFVVYWMT 436
                 *******************************************..9***************************************************** PP

     DUF3533 286 twlvmaavglanenvasil....gppylpvwllfwvilNvsstfvPlelspgFYrygyalPlhniveilrvIffdtakgqlgrnlgiLlawvvvnt 377
                 twl+m+a g++nen++sil    gp++l++w+l+++ilN+++tf+P+++++ FYrygy +P+hn+++i+rvIf+d++k+++grn+g+L+aw+++n 
  CCD23951.1 437 TWLFMVACGGTNENMVSILftlfGPRFLGIWILSFIILNITPTFYPMVMANVFYRYGYMMPVHNAIDIYRVIFLDLSKHKMGRNYGLLIAWIAMNA 532
                 *********************************************************************************************996 PP

>> Fst_toxin  Toxin Fst, type I toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   3.5e-05      0.21       3      13 ..     352     362 ..     351     365 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.5e-05
   Fst_toxin   3 tiIAPivVGVi 13 
                 ++IAP++VGV+
  CCD23951.1 352 VLIAPLLVGVA 362
                 79********7 PP

>> DUF1387  Protein of unknown function (DUF1387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.3    0.0006       3.6      50     172 ..      14     136 ..       2     142 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0006
     DUF1387  50 gsakdtesvdslsekldtasldakeleseesasaeteekeselelqkaevelepklvak.sesseaqqksakkqqkneskpksrtssessvkasskkev 147
                 +s  ++ s d+ +e++ ++s+ + +l+ ++s++++  + + +l+ ++ + ++ +k   + s +s++ q ++ +   +e+ +   +s ++++ +s   + 
  CCD23951.1  14 TSSGQNPSSDPYNEQDLSSSISHSSLSPSPSTEDSIAQFDGQLQYEDRQGDITSKEEDNrSLQSDPIQDTNTSP--KENNTSATHSHNNKSDNSGAFNP 110
                 334677899****************************9999999999999988887544134444444444443..34444444444444444444555 PP

     DUF1387 148 kt.ddvqessagkklgsnieksvKdL 172
                 +  d++ + ++++  ++ ++k+ Kd+
  CCD23951.1 111 NDeDNALQRTGTRYFSPKLKKARKDV 136
                 54044555666899999****99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1051  (0.0586201); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3813.39
//
Query:       CCD23952.1  [L=202]
Description: hypothetical protein NDAI_0C02920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-21   75.7   1.9    4.1e-21   75.3   1.3    1.5  1  SUI1      Translation initiation factor SUI1
  ------ inclusion threshold ------
       0.73   10.1   7.3        7.4    6.9   0.5    2.5  2  Cu        Cupiennin


Domain annotation for each model (and alignments):
>> SUI1  Translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   1.3   4.6e-25   4.1e-21       3      71 ..      97     167 ..      95     176 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 4.6e-25
        SUI1   3 pkihirleqrggrKkvTtvsgleafgidlkklakelkkkfacsgsvvk..dggeeiqvQGdqrkkvaelLt 71 
                 +k+ i++e r++rK++  +sgle f+id+kklak++ +kfa+++sv+k  +++ee+ vQGd+ ++v+ ++ 
  CCD23952.1  97 SKVIIKREARTKRKYIIAISGLEVFEIDMKKLAKTFASKFATGCSVSKnaEKKEEVIVQGDVLEEVEAYIH 167
                 799*******************************************9954446*************99864 PP

>> Cu  Cupiennin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   1.3    0.0015        13       9      18 ..      91     101 ..      91     112 .. 0.80
   2 ?    6.9   0.5   0.00083       7.4      11      22 ..     126     137 ..     125     138 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0015
          Cu   9 LAKKvAKtv.a 18 
                 LAKK+A +v +
  CCD23952.1  91 LAKKLASKViI 101
                 9*****99954 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00083
          Cu  11 KKvAKtvakyiA 22 
                 KK+AKt a+  A
  CCD23952.1 126 KKLAKTFASKFA 137
                 9******99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1602  (0.0893524); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1525.05
//
Query:       CCD23953.1  [L=246]
Description: hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-26   91.1   0.0    1.1e-25   90.6   0.0    1.3  1  RNase_PH    3' exoribonuclease family, domain 1
    2.2e-05   24.4   0.1    4.7e-05   23.3   0.1    1.6  1  RNase_PH_C  3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   1.3e-29   1.1e-25       1     131 [.      21     152 ..      21     153 .. 0.92

  Alignments for each domain:
  == domain 1  score: 90.6 bits;  conditional E-value: 1.3e-29
                 EEEEEEEEESSSSTTS.EEEEEEECCEEEEEEEEEEEEEE-TCCG.--CCEEEECCCCECCCCEC-C....S...HHHHHHHHHHHHHHCCTC-CCGCC CS
    RNase_PH   1 elRslsietgvlsqan.GSaylelGdtkvlasvtgpieerpseer.ddaegaldveveyapfasger.rregrpsdeeielsrlleralrpsillekkp 96 
                 elR+++ ++++ ++a+ GS+yle+G++k+++ v+gp+e+  s+++ d+++  l + v++++f++ er ++ +r++++  e++ +l r++++ ++l+ +p
  CCD23953.1  21 ELRRFESSINTHPHASdGSSYLEQGNNKIITLVKGPKEP-TSRSQvDTNKALLRISVNITQFSKFERsKSSHRNERRVLEMQTALVRTFEKNVMLNLYP 118
                 799*******9999877*********************9.556665777666***************666699************************** PP

                 TCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCE CS
    RNase_PH  97 kstididitvlssdggslldalinaaslALadagi 131
                 ++ idi i+vl++dg +++ +l n+++lAL+dagi
  CCD23953.1 119 RTLIDIEIHVLQQDG-GIMGSLLNGITLALIDAGI 152
                 ***************.******************9 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   5.2e-09   4.7e-05       2      64 ..     157     217 ..     156     220 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 5.2e-09
                 --EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTSEEEEEEEECSSCEEHHHHHHHHHHH CS
  RNase_PH_C   2 pviavtvgkvddqfvlDptkeEedlsegdltlavagtkevvtlmkeggsqldeetlleaielA 64 
                 ++++++vg+ d + +lD +  Ee  + +++tl v+g+ e+  l+  + + ++ + ++ ++ ++
  CCD23953.1 157 YISGISVGLYDTTPLLDVNSLEET-AMSSVTLGVVGKSEKLSLLLVEDK-IPLDRMETVLAIG 217
                 689*****************9966.88*************999999998.9999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       435  (0.0242624); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1917.01
//
Query:       CCD23954.1  [L=332]
Description: hypothetical protein NDAI_0C02940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-72  240.5   0.0    9.4e-72  239.8   0.0    1.4  1  Gp_dh_C       Glyceraldehyde 3-phosphate dehydrogenase, C-ter
    3.2e-38  130.1   0.0    7.4e-38  129.0   0.0    1.6  1  Gp_dh_N       Glyceraldehyde 3-phosphate dehydrogenase, NAD b
  ------ inclusion threshold ------
       0.12   11.8   0.0       0.24   10.8   0.0    1.5  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.8   0.0   1.6e-75   9.4e-72       1     158 []     155     312 ..     155     312 .. 1.00

  Alignments for each domain:
  == domain 1  score: 239.8 bits;  conditional E-value: 1.6e-75
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-H CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtv 99 
                 Laplak++nd+fgi++glmttvh+ t++Qk++Dgps+kd+r +r+a+ niip+stgaakavg+Vlpel+gkl+g+A+rVPt++vsvvdl+v+l+ke+t+
  CCD23954.1 155 LAPLAKIINDNFGIEEGLMTTVHSQTATQKTVDGPSHKDWRGGRTASANIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKETTY 253
                 8************************************************************************************************** PP

                 HHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C 100 eevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivveenlvkvvawy 158
                 +e+++++k+aaeg+lkg+++yte+ +vssD+ gd+hssifda+++i+++ ++vk+++wy
  CCD23954.1 254 DEIKKVVKAAAEGPLKGVVGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLISWY 312
                 **********************************************************9 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.0   1.2e-41   7.4e-38       2     100 ..       3     102 ..       2     103 .. 0.98

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 1.2e-41
                 EEEEESTSHHHHHHHHHHHHHTTCEEEEEE-.TS-HHHHHHHHHEETTTEC-SS-EEEETTEEEETTEEEEEE--SSGGGS-CHHHTSSEEEE-SSS-- CS
     Gp_dh_N   2 kvainGfGRIGrlvlralleekelevvaind.ltdletlayllkyDsvhgrfkgeveaeeealvvngkkikvlaekdpeelpwkelgvdlVvestGvft 99 
                  vainGfGRIGrlvlr+++++k+++v aind +++++++ay++kyDs+hgr++gev++++++++++g+ki++++e+dp++lpw++l++d+ ++stGvf+
  CCD23954.1   3 TVAINGFGRIGRLVLRIAMARKNVTVAAINDpFISNDYAAYMFKYDSTHGRYNGEVSHDDKHIIIDGHKIATFQERDPANLPWASLKIDIAIDSTGVFK 101
                 79*****************************99*****************************************************************8 PP

                 S CS
     Gp_dh_N 100 d 100
                 +
  CCD23954.1 102 E 102
                 6 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.9e-05      0.24      38      67 ..       3      33 ..       1      52 [. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 3.9e-05
                  EEEEES-SHHHHHHHHHHH.HTT-EEEEESS CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlk.afgmkviaydr 67
                  tv+i G+GrIG+ v +++    ++ v a++ 
    CCD23954.1  3 TVAINGFGRIGRLVLRIAMaRKNVTVAAIND 33
                  99***************98345566666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2319.32
//
Query:       CCD23955.1  [L=609]
Description: hypothetical protein NDAI_0C02950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.5e-136  454.2  31.8   5.6e-136  453.9  31.8    1.0  1  AA_permease      Amino acid permease
    7.3e-39  133.8  34.5      9e-39  133.5  34.5    1.0  1  AA_permease_2    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.9  31.8  6.3e-140  5.6e-136       1     472 [.     100     560 ..     100     564 .. 0.98

  Alignments for each domain:
  == domain 1  score: 453.9 bits;  conditional E-value: 6.3e-140
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h++  a+gg iG+glfv +g +l+++Gp+++++ ++++ +++f v+++lge+a ++p++ggf++y++rf++p+++f+i+lnyl +w++ l+lel+aas
   CCD23955.1 100 HLITLAVGGSIGVGLFVNSGAALASGGPASLVIDWVIISTCLFTVINALGELAAAYPVVGGFNVYITRFVDPSVAFAINLNYLAQWLVLLPLELVAAS 197
                  88999********************************************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                  i+i++w  ++ ++  ++++a+f+ v+ + n++ vk +ge+ef+l+++ki+aii+f i+gi+l +gg+p+ g  g+++++d+gs     ++++   + +
   CCD23955.1 198 ITIKYW--NDTIN-SDAWVAIFYSVIALANMLDVKSFGETEFVLSMVKILAIIGFTILGIVLACGGGPQGGFlGGHYWHDPGS-----FVGD---KPG 284
                  ******..88888.*********************************************************9***********.....6666...455 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa...aspfvifikesgvsvlap 290
                   +fk+ +svfv+++f+++Giel+a+ a+E+kdP+k+iPka++++++++t +Yv +l +ig lvp +d+ lln+s s+   asp+vi ik++g+++l +
   CCD23955.1 285 TQFKGLCSVFVTAAFSYSGIELTAVSAAESKDPRKTIPKATKRTFWLVTASYVTILTIIGCLVPFDDPRLLNGSSSVdaaASPLVISIKNAGIKGLDS 382
                  57**********************************************************************99999********************* PP

  AA_permease 291 linaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl 388
                  l+na+il++++s+ans++y++sR + s+a+ g +Pkvl++v+krg+P++ail +++++ll++++as + a  +vf++l+a+s+l+++++w++i++s++
   CCD23955.1 383 LMNAIILISIVSVANSAVYACSRCMVSMAHIGNLPKVLSRVDKRGRPVNAILSTLFFGLLSFIAASDKQA--EVFTWLSALSGLSTIFCWMAINYSHI 478
                  ********************************************************************99..************************** PP

  AA_permease 389 rfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvkn 472
                  rfR a+k+q++ ++el++ +++++ g+++++++l ++l++ +++ +++   g ++ +++sf++ yl+++++++++vg+kl+v+n
   CCD23955.1 479 RFRAAMKVQNKTLDELPYLSQCGVIGSWYGVIVLFLVLVASFWTSLFP--LGSGTADVTSFFEGYLSLPILIACYVGHKLYVRN 560
                  ************************************************..5555788*************************98 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.5  34.5     1e-42     9e-39       1     407 [.      96     528 ..      96     549 .. 0.81

  Alignments for each domain:
  == domain 1  score: 133.5 bits;  conditional E-value: 1e-42
  AA_permease_2   1 lsllsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlas 94 
                    ls + ++ l++g  ig+g fv +  ++asggpa++++ w+++  ++++v+ ++ El++a p  gG  vy  ++  + vaf     ++ ++++ l++
     CCD23955.1  96 LSIRHLITLAVGGSIGVGLFVNSgaALASGGPASLVIDWVIISTCLFTVINALGELAAAYPVVGGFNVYITRFVDPSVAFAINLNYLAQWLVLLPL 191
                    67788999*************99999999****88877766666669*********999***********************99999999999999 PP

  AA_permease_2  95 ilsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl...stetdt...ffp 184
                     l++a  ++ + ++ +++ + w      ++++ ++al n + +k  +   ++l  +ki l +i + ilg+++++ggg +      + ++    f++
     CCD23955.1 192 ELVAASITIKY-WNDTINSDAWV-----AIFYSVIALANMLDVKSFGETEFVLSMVKI-LAIIGFTILGIVLACGGGPQGGflgGHYWHDpgsFVG 280
                    99888888888.66566655544.....456***************************.69999999********999877666333333331333 PP

  AA_permease_2 185 n..gwpgv.....llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsv......aalffe 265
                    +  g   +      +++ ++++s++G+e  a+ + e k   k++pka+   + +v+ +y+ +   +   vp d    l+++ sv      + +  +
     CCD23955.1 281 DkpG---TqfkglCSVFVTAAFSYSGIELTAVSAAESKDprKTIPKATKRTFWLVTASYVTILTIIGCLVPFDDPRLLNGSSSVdaaaspLVISIK 373
                    3443...233444889999*****************6655489*******************9889999999999555555554445444888999 PP

  AA_permease_2 266 avggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgli 359
                    ++g k + ++++++i +s++  +n+av+++sr + ++a  g lP+++++v+k+g+p++ai  t+ + l+ +  +++++  ++ +++l+++s l+ i
     CCD23955.1 374 NAGIKGLDSLMNAIILISIVSVANSAVYACSRCMVSMAHIGNLPKVLSRVDKRGRPVNAILSTLFFGLLSF--IAASDkqAEVFTWLSALSGLSTI 467
                    99999**************************************************************6655..4445589**************** PP

  AA_permease_2 360 isyllliigalilrkkrphlkr.............pgkilvaiigalfllfllvalf....fppk 407
                    ++++++  + +  r  ++++++             +     ++ g+++l+++lva f    fp+ 
     CCD23955.1 468 FCWMAINYSHIRFRAAMKVQNKtldelpylsqcgvI----GSWYGVIVLFLVLVASFwtslFPLG 528
                    ******************998879999544443332....3333343333333443322225544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.46
# Mc/sec: 3994.40
//
Query:       CCD23956.1  [L=302]
Description: hypothetical protein NDAI_0C02960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-38  131.2   0.9    3.1e-38  130.5   0.2    1.7  2  EIF_2_alpha  Eukaryotic translation initiation factor 2 alpha
    2.6e-14   53.3   2.0    4.9e-14   52.4   1.0    1.9  2  S1           S1 RNA binding domain
     0.0023   18.2   0.7     0.0051   17.1   0.7    1.5  1  Troponin     Troponin
  ------ inclusion threshold ------
       0.11   13.1   1.2       0.22   12.1   0.3    2.0  2  EXOSC1       Exosome component EXOSC1/CSL4


Domain annotation for each model (and alignments):
>> EIF_2_alpha  Eukaryotic translation initiation factor 2 alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.2   6.8e-42   3.1e-38       1     116 []     126     237 ..     126     237 .. 0.97
   2 ?   -2.2   0.0      0.93   4.1e+03      70      86 ..     239     255 ..     238     278 .. 0.69

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 6.8e-42
                  HHHCTHHHHTTTTS-HHHHHHHHHSTTHHHHHTTS-.TTTHHHHHHCTHHHHHHT-EEEEEEEEEEE-STTHHHHHHHHHHHHST.S..TTSSSEEEE CS
  EIF_2_alpha   1 lyeevgwklyekyghaydaFklaitdeevldkleip.eeveeaLveiikkklkpqkvkiradieltcftkdGveaIkeaLkageeasneeeveeeeev 97 
                  ly++++w+l +kyghay+aFkl+i d++v++ +e p +e+ ++L+ +i+k+l+pq+vkirad+e++cf+++G++aIkeaLka+e++s+e+      e+
   CCD23956.1 126 LYKTIAWPLSRKYGHAYEAFKLSIIDDTVWEGIEPPsKEIFDELKVYISKRLTPQAVKIRADVEVSCFGYEGIDAIKEALKAAEDMSTEQ-----LEI 218
                  7********************************988799******************************************999988887.....*** PP

                  EEEESSSSEEEEEEEES.. CS
  EIF_2_alpha  98 kikliapPeYvltvetldk 116
                  k+kl+a+P+Yvlt+++ldk
   CCD23956.1 219 KVKLVAAPLYVLTTQALDK 237
                  *****************97 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.93
                  THHHHHHHHHHHHST.S CS
  EIF_2_alpha  70 dGveaIkeaLkageeas 86 
                  +Gv++ ++a+++ ee+ 
   CCD23956.1 239 QGVQKLQDAIEKIEEVI 255
                  58888888887665544 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   1.0   1.1e-17   4.9e-14       2      75 .]      14      88 ..      14      88 .. 0.98
   2 ?   -2.6   0.0       1.7   7.4e+03      28      47 ..     279     298 ..     272     300 .. 0.73

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.1e-17
                STTTCEEEEEEEEEETTEEEEEET..TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1  2 pekgevveGeVtsvtkgGafVelg..ngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75
                pe++++v+ +V+++ ++Ga+V l+   ++eg++ +selsr+ r++++ + ++vG+   ++vl+vdk++++i+ls++
  CCD23956.1 14 PEVDDIVMVNVQQIAEMGAYVKLLeyDNIEGMILLSELSRR-RIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKR 88
                789*********************999**************.********************************86 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.7
                 EEEEEEGGGSSSSCEESCHH CS
          S1  28 vegfvpaselsrdarvedpd 47 
                  ++++  +el+++ + ed+d
  CCD23956.1 279 LQALLESKELDNRSDSEDED 298
                 56788889999985555555 PP

>> Troponin  Troponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.7   1.1e-06    0.0051      36     126 ..     203     294 ..     197     299 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.1e-06
                 XXXX.XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXX---THHHHHHH------.XXXXX CS
    Troponin  36 eplkeldglseeqlqelckklheridkleeekydieekvakkdkeieelkkkvndlrGk.fkkpalKkvrktadeklkkllgekkkplniDf 126
                 e lk+ +++s eql++ +k  ++ + +l  +  d+++ v+k +  ie+ +  +n+  G      + K v  t+d++l++ll++k+  +  D 
  CCD23956.1 203 EALKAAEDMSTEQLEIKVKLVAAPLYVLTTQALDKDQGVQKLQDAIEKIEEVINKYGGVcNITMPPKAVTATEDAELQALLESKELDNRSDS 294
                 45667777788***********************************************98888999******************98777765 PP

>> EXOSC1  Exosome component EXOSC1/CSL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   4.9e-05      0.22       2      59 ..      14      71 ..      13     111 .. 0.78
   2 ?   -1.6   0.0      0.91   4.1e+03      44      82 ..     249     288 ..     217     297 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.9e-05
                S-TT-EEEEEEEEEESSEEEEEEEEECTBSBCCCEEECCCTTSS--STSTTSSCCHCT CS
      EXOSC1  2 PkegdvVLarvtrlrkkqalveilsvegennvlsdsgvgangegavkeieagggldsl 59
                P+++d+V++ v ++ +  a+v++l  ++ + ++  s ++     +++++  +g++d  
  CCD23956.1 14 PEVDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVA 71
                9*************************99988888899988888888888666666653 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.91
                 SS--STS.TTSSCCHCTEEETTSSTTTT.SEEEEEECCCT CS
      EXOSC1  44 egavkei.eagggldsllsvatvssdlgetfkaiirsqdv 82 
                 e++ + i + gg  ++++  ++v++  + +++a++ s+++
  CCD23956.1 249 EKIEEVInKYGGVCNITMPPKAVTATEDAELQALLESKEL 288
                 3334444555666666666667777777778887777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1090  (0.0607954); expected 358.6 (0.02)
Passed bias filter:                      644  (0.0359195); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2004.91
//
Query:       CCD23957.1  [L=335]
Description: hypothetical protein NDAI_0C02970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-92  308.4   0.2      4e-92  308.2   0.2    1.0  1  Memo      Memo-like protein


Domain annotation for each model (and alignments):
>> Memo  Memo-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.2   0.2   2.2e-96     4e-92       2     270 ..       7     329 ..       6     330 .. 0.96

  Alignments for each domain:
  == domain 1  score: 308.2 bits;  conditional E-value: 2.2e-96
        Memo   2 aavAGsfYpedeeelkkqleeflekntgkkei.arviisPHagyvysgevaakayaeles.skvervvilGpsHtilg.skvsvlaaseleTPlGdlkv 97 
                 a++AGs+Y+++++el++ql+++l+++ ++     r+iisPHagy+y+g ++a++ya+l+  ++++r++ilGpsH+i++ +++ v+a++ ++TPlGdlkv
  CCD23957.1   7 ATHAGSWYSRNAAELSSQLQTYLNNSKKPIVKnSRIIISPHAGYRYCGSTMAYSYASLDLnENIKRIFILGPSHHIFFsNEIFVSAFDSISTPLGDLKV 105
                 89******************9999998886557999************************999*************9989******************* PP

        Memo  98 DeelveeLvkkeei....adldetaa.laEHSlEvqlpfLkellkek.....kfkivPilvsaqseetakevgealakvikdesnlviiSsDlsHygrr 186
                 D++l+ +Lv+k+ +    + ++++++   EHSlE+q+ +L+++l+++     ++k++P++vs++++e ++ vg++l++++ d+snl+iiSsD++H+grr
  CCD23957.1 106 DKDLCSKLVRKKISgkkiFSFMNQDVdTDEHSLEMQFSMLVQTLNWRkvpldNVKVIPMMVSHNTKEFDMSVGKILSEYLNDPSNLFIISSDFCHWGRR 204
                 **********9765666699******9********************99*999********************************************** PP

        Memo 187 Fg................................spqeiaesie..Drevikaleel....neeelkeylektnnticGekpiavilkalkklga...k 244
                 F+                                ++ +i++sie  D++++ +l+++    +++++k+yle t+nticGe pi v+l al  l      
  CCD23957.1 205 FEytgyvgsedelkeateeeteiemltsrsklkhHQIPIWKSIEilDKHAMRTLSDTqnsdRYDAWKQYLEITGNTICGERPIGVVLAALAYLPEnskV 303
                 ********************************************************9999999************************999988776668 PP

        Memo 245 kakllkYaqssdvtsdtdsvVsyasl 270
                  +++++Y+qss+v+s ++s+Vsy s+
  CCD23957.1 304 TFEWPHYSQSSQVQSLEESSVSYTSG 329
                 9**********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2403.24
//
Query:       CCD23958.1  [L=371]
Description: hypothetical protein NDAI_0C02980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-85  286.1  28.0    4.3e-85  285.7  28.0    1.1  1  Mannosyl_trans  Mannosyltransferase (PIG-M)
    1.6e-09   37.4  29.0    6.8e-09   35.3  29.0    1.8  1  PIG-U           GPI transamidase subunit PIG-U
    2.1e-08   34.2   1.6    2.1e-08   34.2   1.6    2.1  2  GT87            Glycosyltransferase family 87


Domain annotation for each model (and alignments):
>> Mannosyl_trans  Mannosyltransferase (PIG-M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.7  28.0   7.2e-89   4.3e-85       1     259 []      88     351 ..      88     351 .. 0.95

  Alignments for each domain:
  == domain 1  score: 285.7 bits;  conditional E-value: 7.2e-89
  Mannosyl_trans   1 istrGnadsivailvlltlyllekrkiasaalvlGlavhlkiYPliyalalalslskkkeqsvaakllrllkiavlvlvlvalisllaltlllyk 95 
                     istrGna+s+++++++l ly l+  ++  a++++Gl++h+kiYP+iy+ ++a+++  + + s ++++++    + +v+ +++l++++ l +++y+
      CCD23958.1  88 ISTRGNAESLLCFFIMLSLYYLQEGHYWLAGVIYGLSIHFKIYPIIYCSSMAIYIFYNDSGSNKNQTVSKRFKDLFVVGVSTLMTIILLGFIMYY 182
                     8******************************************************988888888888766555677888**************** PP

  Mannosyl_trans  96 lYGqefleeaylYhlvrkDhrhnfslyflllYleeaskvaassilkllaflPqlvllllvsl.kf....rrnlafalfvqtfvfvtfnkvctsqY 185
                     +YG+efl++ay+Yhl+r+Dhrhnfsl+++llY ++a+ + + s l+ +aflPql+++  +s+ ++    + nl+ ++f+qtf+fv fnkvctsqY
      CCD23958.1 183 IYGYEFLDQAYFYHLYRTDHRHNFSLWNMLLYYDSAKDADSISYLSKMAFLPQLLIVFPLSYlEWinatFMNLVNVIFLQTFAFVIFNKVCTSQY 277
                     ***********************************999888889************999976367888899************************ PP

  Mannosyl_trans 186 fvWylvlLplllskvkllswkkalvllllWlatqalWllaayllefegkntfll.lflasllfllanvviLkqll 259
                     f+Wylv+Lp++ls++ + + kk++++l++W++tqa+Wl+++y+lefegkn f++ +f+ ++ f++ nv+iL q++
      CCD23958.1 278 FIWYLVFLPIVLSRTTI-TGKKGIMMLFVWVLTQAFWLSQGYYLEFEGKNAFYPgIFFGAVSFFIGNVWILGQFI 351
                     *****************.66**********************************9*****************997 PP

>> PIG-U  GPI transamidase subunit PIG-U
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3  29.0   1.1e-12   6.8e-09      47     359 ..      11     311 ..       7     317 .. 0.72

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 1.1e-12
       PIG-U  47 gispYsggvvhqpPLllallslllssintkslqvlasllflliDllialllykiknkslaksekkreksktkkslsplliaavYlfNPltilscvslSt 145
                 g spY+ ++++  PLl  ll       +  +  +l +l+f++ Dll+++ll+ i  ++l  ++++         l+  ++  ++l+NP++i  +  +  
  CCD23958.1  11 G-SPYQRDTYRYTPLLSWLLVPN----HYFGWFHLGKLFFVIYDLLTGILLLRI-LRKLIPDISD---------LKLTFLGSIWLLNPMVITISTRGNA 94 
                 4.9************98887555....567888899******************.5666666554.........8889********************* PP

       PIG-U 146 svlsnlllllslylalkgkallsalslalatylslypllllapllllllkllkaskskkpsksnklskllrllllfllyllvLll.aSfllggswsflr 243
                 ++l  ++++lsly++ +g+ +l+ ++++l+ ++++yp++ +  +++++    + s s+k+++++k  k l+++ +++l++++Ll  + +++ g  +fl+
  CCD23958.1  95 ESLLCFFIMLSLYYLQEGHYWLAGVIYGLSIHFKIYPIIYCSSMAIYIFY--NDSGSNKNQTVSKRFKDLFVVGVSTLMTIILLGfIMYYIYG-YEFLD 190
                 **************99************************9999877766..56666666666666666666666666666666645555555.88*** PP

       PIG-U 244 atygniltvsdltPnlGlfWYfFt..emFdrFrsfFlfvFqllp.flyvlPLtirLrkq......pllllvlllalilifkpyptvgdlalllsLlplf 333
                 + y  +l   d+  n  l+  +++     d    ++l  + +lp +l+v+PL+  L+         + +++l++  ++if+   t   ++ +l++lp+ 
  CCD23958.1 191 QAYFYHLYRTDHRHNFSLWNMLLYydSAKDADSISYLSKMAFLPqLLIVFPLSY-LEWInatfmnLVNVIFLQTFAFVIFNKVCTSQYFIWYLVFLPIV 288
                 *****************9965544212334444567777777776677777754.22222334422223333444455666666666667777777777 PP

       PIG-U 334 kellkrmkysfiillillvtllLspv 359
                    l r+  +  +++++l++ +L  +
  CCD23958.1 289 ---LSRTTITGKKGIMMLFVWVLTQA 311
                 ...44444444444444444444444 PP

>> GT87  Glycosyltransferase family 87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   1.6   3.6e-12   2.1e-08       1     146 [.      19     180 ..      19     211 .. 0.79
   2 ?   -3.1   4.7      0.86   5.1e+03       8      87 ..     236     309 ..     232     338 .. 0.55

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 3.6e-12
        GT87   1 FtYPPfaallfaplallpyglalalwallnlaalllalrlllrrlgralasavalalllaalalepvlstlgfGqinllllllvlldllllrrrrplla 99 
                 + Y P+   l++p +++ +  ++ l+ ++  +++ ++l ++lr l  + +++ +++l  ++l+ + v +    G+   ll + ++l+l +l++++ +la
  CCD23958.1  19 YRYTPLLSWLLVPNHYFGWFHLGKLFFVIYDLLTGILLLRILRKLIPDISDLKLTFLGSIWLLNPMVITISTRGNAESLLCFFIMLSLYYLQEGHYWLA 117
                 56****************9999999999999999999999999998776655555555555555555777788*********************999** PP

        GT87 100 GlliGlaaaiKltPalfllylll...............rrrwralaaaaatalvltal.plll 146
                 G++ Gl +  K++P++     ++                +r++ l++ ++++l +++l ++++
  CCD23958.1 118 GVIYGLSIHFKIYPIIYCSSMAIyifyndsgsnknqtvSKRFKDLFVVGVSTLMTIILlGFIM 180
                 ***************987633334456888888888888888888888777777776656655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.86
        GT87   8 allfaplallpyglalalwallnlaalllalrlllrrlgralasavalalllaalalepv.lstlgfGqinllllllvlld 87 
                 +l++ pl++l++  a+++  l+n++ l  ++ ++ + +         +  ++++++l+ v   t  +G   +++l++ +l 
  CCD23958.1 236 LLIVFPLSYLEWINATFM-NLVNVIFLQTFAFVIFNKV------CTSQYFIWYLVFLPIVlSRTTITGKKGIMMLFVWVLT 309
                 566667777766555544.4445555555555554443......3333333445555555555666666666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2597.87
//
Query:       CCD23959.1  [L=151]
Description: hypothetical protein NDAI_0C02990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-10   39.1   0.2    8.9e-10   38.3   0.2    1.5  1  DUF5572   Family of unknown function (DUF5572)


Domain annotation for each model (and alignments):
>> DUF5572  Family of unknown function (DUF5572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.2     5e-14   8.9e-10       5      48 .]       6      50 ..       2      50 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.3 bits;  conditional E-value: 5e-14
     DUF5572  5 sFaelveLIesGkpIPgIkqIPdtvle.aqpsestaprRkKPWEk 48
                +  elve I+++kp+P+I +++d vl  +  + s++++R KPWE+
  CCD23959.1  6 TLNELVEHITKNKPVPNIVHVDDIVLGeELTTISIMAPRAKPWET 50
                6689*********************88689999***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1165.91
//
Query:       CCD23960.1  [L=291]
Description: hypothetical protein NDAI_0C03000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2287.61
//
Query:       CCD23961.1  [L=93]
Description: hypothetical protein NDAI_0C03010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-23   83.1   0.5    1.3e-23   82.9   0.5    1.1  1  SPC12     Microsomal signal peptidase 12 kDa subunit (SPC12)


Domain annotation for each model (and alignments):
>> SPC12  Microsomal signal peptidase 12 kDa subunit (SPC12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.5   7.1e-28   1.3e-23       1      70 [.      16      85 ..      16      86 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 7.1e-28
       SPC12  1 iDFeGQklaekllqvilvlsaviafivGyitqdlkltlyillagvvltllvvvPpWpfYnrnplkWlkpk 70
                iDF +Q+++  l++ il+++++i++ivG+ t +l+l++ ++++++++t+lvvvP++p++n+++l+W++pk
  CCD23961.1 16 IDFPSQRKTALLQRNILIIGGIISCIVGFQTGSLSLLMGCYGVAYLITVLVVVPAYPCFNKQKLQWVQPK 85
                9******************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 748.94
//
Query:       CCD23962.1  [L=511]
Description: hypothetical protein NDAI_0C03020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-87  290.3   0.0    9.4e-87  289.9   0.0    1.1  1  ATP-sulfurylase  ATP-sulfurylase
    3.1e-48  163.5   0.0    4.7e-48  162.9   0.0    1.3  1  PUA_2            PUA-like domain
  ------ inclusion threshold ------
      0.066   13.4   0.0       0.14   12.3   0.0    1.6  1  CTP_transf_like  Cytidylyltransferase-like


Domain annotation for each model (and alignments):
>> ATP-sulfurylase  ATP-sulfurylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.9   0.0   1.6e-90   9.4e-87       3     211 ..     172     386 ..     170     387 .. 0.98

  Alignments for each domain:
  == domain 1  score: 289.9 bits;  conditional E-value: 1.6e-90
                      CB.-HHHHHHHHHHTT-SSEEEEEESS---HHHHHHHHHHHHH.TSEEEEEEEB-SB-STTSTTHHHHHHHHHHHHHHHS-GGGEEE-BB-SB- CS
  ATP-sulfurylase   3 yrltPaevreefkekgwdkVvAfqtrnplHraHeellkralee.eadglllhplvgptkpgdvpaevrvrayealieeylpkdrvvlallplam 95 
                      +r+tPa++r ef++++wd+VvAfqtrnp+HraH+el+ ra++e +a+ +l+hp+vg tkpgd+++++rvr y+++i++ +p+  ++l+llplam
       CCD23962.1 172 LRKTPAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAAREtNAK-VLIHPVVGLTKPGDIDHHTRVRVYQEIIKR-YPNGIAFLSLLPLAM 263
                      799***************************************97777.******************************.*************** PP

                      --SCHHHHHHHHHHHHHTT-SEEEE-TTTT-STC......SS-TTHHHHHHHHCHHHCTSEEEE---EEEETTTTEEEECCCC.GCCGGEEE-- CS
  ATP-sulfurylase  96 ryaGprEallhaiirknyGcthfivGrdhagvgd......fYgpydaqellakvagelgiepvkfeeavYckkegevasektc.hkkeevesis 182
                      r++G rEa++haiirknyG+thfivGrdhag+g+      fYgpydaqel++++++el+i++v+f+++ Y ++e+++a +     +k+++ +is
       CCD23962.1 264 RMGGDREAVWHAIIRKNYGATHFIVGRDHAGPGSnskgvdFYGPYDAQELVESYKHELDIQVVPFRMVTYLPDEDRYAPIDEIdTTKTRTLNIS 357
                      ***************************************************************************9998877779999****** PP

                      HHHHHCCHHTT----TTTS-HHHHHHHHH CS
  ATP-sulfurylase 183 gtelrkllregeeipewfsrpevlkvLre 211
                      gtelrk+lr g eipewfs+pev+k+Lre
       CCD23962.1 358 GTELRKRLRVGGEIPEWFSYPEVVKILRE 386
                      ***************************97 PP

>> PUA_2  PUA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.9   0.0   7.9e-52   4.7e-48       2     158 ..       3     162 ..       2     163 .. 0.96

  Alignments for each domain:
  == domain 1  score: 162.9 bits;  conditional E-value: 7.9e-52
                 S-TTSS----B--CH.HHHHHHHHHHT..S-EEE--HHHHHHHHHHHTTTTTT-SCC--HHHHHHHHHHSEETTS-E-SS---EEEECCHCHHHTT-SE CS
       PUA_2   2 kphggkLvelvvede.ekeellkeake..lpsielskrelqdlellaeGgfsPLegFmreedyesvleemrLadgllwsiPivLdvseedakklkegdr 97 
                 +phgg L++l+++d+ +k++llke ++  l +++l++r+++d+el+ +GgfsPL+gF++e+dy+ v+++ rLadg+lw++Pi+Ldv+e+ a++++  +r
  CCD23962.1   3 APHGGILQDLIARDAsKKDALLKEVQKgkLTQWSLTARQICDIELILNGGFSPLTGFLNEKDYLGVVNNSRLADGTLWTMPITLDVDEKFASSVSSNSR 101
                 7**************999999999887779********************************************************************* PP

                 EEEEETTTEEEEEEEEEEEEE-HHHHHHHHHHS---TTSHHHHHHC.TS-SEEEEEEEEE-S CS
       PUA_2  98 vaLkdkegellAileveeiyeldkeeeaekvfgttdeaHPgvkkvl.eqgevlvgGkvevle 158
                 ++L ++++ ++Ail+v+++y++dk+ ea++vf+++ e HP+++++   +g++++gG++e+++
  CCD23962.1 102 ILLLQDNEIPIAILTVADVYKPDKQLEAKNVFRGDPE-HPAIRYLNnIAGDYYIGGSLEAIQ 162
                 *****98888***********************9765.********889**********997 PP

>> CTP_transf_like  Cytidylyltransferase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.4e-05      0.14       7     143 .]     198     364 ..     196     364 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.4e-05
                      TT--HHHHHHHHHHHHHSSESEEEEEESSTHCSST-SCSSTHHHHHHHHHHH.TTCTTEEEEEEESEHH...............HHHHHTTTTE CS
  CTP_transf_like   7 DpiHlGHlrlleqakklleedlivgvpsdeppkkkkkplasaeeRlemlela.kevdevisvdpweltr...............evlkklkpdk 84 
                      +p H +H +l  +a+++ + + +     ++++  +k++ ++ ++R++  +++ k+ ++   +++  l +                ++k++++  
       CCD23962.1 198 NPMHRAHRELTVRAARETNAK-VL---IHPVVGLTKPGDIDHHTRVRVYQEIiKRYPN--GIAFLSLLPlamrmggdreavwhaIIRKNYGAT- 284
                      8*******************5.43...3666666668999************644444..55555555566899*********99********. PP

                      EEEEEEHHHHHH........HHCHHHHHHHHHHHH..HEEEEEE............HTTCEEEEEEECCTTTCSHHHHHHH CS
  CTP_transf_like  85 lylvigadvled........fsewkeleeilgnvk..lvvvsrp............ekqanvllkaekrtngiSstkirer 143
                        +++g d            f  +++ +e+++++k  l ++++p            + +   +  ++ rt +iS+t++r+r
       CCD23962.1 285 -HFIVGRDHAGPgsnskgvdFYGPYDAQELVESYKheLDIQVVPfrmvtylpdedrYAPIDEIDTTKTRTLNISGTELRKR 364
                      .*******98885666666666666999999987633666667789*******9988888888999999**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3577.07
//
Query:       CCD23963.1  [L=468]
Description: hypothetical protein NDAI_0C03030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.3e-45  152.6   1.1    7.3e-45  152.6   1.1    2.3  3  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.6   1.1   4.1e-49   7.3e-45      12     176 ..      69     227 ..      59     228 .. 0.93
   2 ?   -4.6   4.7      0.76   1.4e+04      58      96 ..     344     383 ..     283     397 .. 0.48
   3 ?   -3.4   2.5      0.32   5.8e+03      28      29 ..     381     386 ..     346     425 .. 0.50

  Alignments for each domain:
  == domain 1  score: 152.6 bits;  conditional E-value: 4.1e-49
                     GGEEEETTSEEEEEEEEEE.EEEEEECCEESSEEEEEEEE---STTEEEEEEEETGGTSTTEEEEEEEETT-TTEEEEEEEBTTBSGE..EEEEE CS
  Glyco_hydro_16  12 savsvengetltltldkes.gsrikskksflyGkvearikaaksaGvvtafylssedekahdEiDiEflGndtgkvqtnvygkGkgkr..ekrls 103
                     +++++   +++++tl k+  ++++ks ++++yGkve+ +ka++++G++++fyl+s   ++ dEiDiE++G d +++q+n+++kG+  +  + +++
      CCD23963.1  69 GTITYGG-DGMNMTLAKRFdNPSLKSDFYIMYGKVEVILKAGSGTGIISSFYLQS---DDLDEIDIEWVGGDGTQFQSNYFSKGSVVTydRGEFH 159
                     4455554.59******9877**********************************9...99*************************9977888999 PP

                     TSS-TTTS-EEEEEEEETTEEEEEETTEEEEEEESSHHHHT.--EESEEEEEEEEEEBSHHHSSE-EEEEEEE CS
  Glyco_hydro_16 104 lwfdptedfHtYaieWtpdkikfyVDgkpvrtltkkeaeevkyPqftpmkvavslwpgsdwateqgkvkidwa 176
                     +++ p++++H+Y+++W  dk ++y+Dg+pvr+l ++++e  +yPq tpm +++++w+g+d ++e g  +i+wa
      CCD23963.1 160 TVSSPQTEYHNYTLDWAMDKTTWYLDGTPVRVLPNTTSE--GYPQ-TPMYIMMGIWAGGDPSNEPG--TIEWA 227
                     99**********************************886..8***.********************..****8 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 0.76
                     EEEEEE.ETGGTSTTEEEEEEEETT-TTEEEEEEEBTTBS CS
  Glyco_hydro_16  58 vtafyl.ssedekahdEiDiEflGndtgkvqtnvygkGkg 96 
                     +++    ss++++++ E     l +++++ ++n+y++ + 
      CCD23963.1 344 IPSSSSaSSSSSSSSVETTTRSLTSKNSTSSSNIYVSSSP 383
                     3333331223345555555555555555555555555544 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 0.32
                     E....E CS
  Glyco_hydro_16  28 k....e 29 
                     +    +
      CCD23963.1 381 SspttS 386
                     122221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1488  (0.082994); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                       159  (0.00886831); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.18u 0.37s 00:00:01.54 Elapsed: 00:00:00.55
# Mc/sec: 2578.26
//
Query:       CCD23964.1  [L=168]
Description: hypothetical protein NDAI_0C03040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-29  102.4   7.6    2.9e-29  101.9   7.6    1.3  1  RNA_pol_Rpb4  RNA polymerase Rpb4
  ------ inclusion threshold ------
      0.099   12.4   0.1       0.17   11.6   0.1    1.3  1  Rer1          Rer1 family


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb4  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   7.6   3.2e-33   2.9e-29       1     122 [.      10     167 ..      10     168 .] 0.91

  Alignments for each domain:
  == domain 1  score: 101.9 bits;  conditional E-value: 3.2e-33
                   EE-HHHHHHHHHHHHHHHHCHHHHHTC........CCC..CHHSHCHTCHHCHHHHHHHHHHHCTHHTTSSHHH....................... CS
  RNA_pol_Rpb4   1 lLsnsEvllvlkeeleerknkdkkese........ddk..isekeevkgnlnkilkktleyltnkfsrlkneek....................... 64 
                   +Ls++Evl++l+ +le+++++d +++         + +  + ++ +++++l++i+  +l++l+  ++++ ++e                        
    CCD23964.1  10 FLSDYEVLQFLS-KLERQNHWDAETILenekhrksK-NkrKIRRPYNHPELQNITSTSLNFLNM-NKNFVQQEGdeemedeeakvknlerdmksplc 103
                   8***********.********987776877776642.15688999******************9.777777776789999999999999999***** PP

                   ......HHHHHHHHTTSTSTHHHHHHHHHCSTSSHHHHHHHSTTGTTTSTSHHHHHHHHHHHHH CS
  RNA_pol_Rpb4  65 ......fnelvellksfeLtkaEklqlvnlkPesavelktlieeleerfedeqleeiLdelkev 122
                         f+e+v++l+++eL k Eklq+vn++P ++v+l++++ee+++rf+ eq+e +L+++ke+
    CCD23964.1 104 rmndakFSEFVTRLNEYELFKVEKLQIVNQLPGNMVHLYSIVEECDSRFTNEQIETMLSIIKEY 167
                   **************************************************************98 PP

>> Rer1  Rer1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.9e-05      0.17      56     109 ..      68     124 ..      62     143 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.9e-05
        Rer1  56 lLnlllafltPkfdpslee.eaaeeeaeegaelp..tkkdeefrPfirrlpEfkfWl 109
                 +Ln+  +f++ + d+++e+ ea+ +++e +++ p  + +d  f  f+ rl+E++++ 
  CCD23964.1  68 FLNMNKNFVQQEGDEEMEDeEAKVKNLERDMKSPlcRMNDAKFSEFVTRLNEYELFK 124
                 6788889999999999999556667777777555337999*************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1709  (0.0953204); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1264.47
//
Query:       CCD23965.1  [L=730]
Description: hypothetical protein NDAI_0C03050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.1e-101  338.4   2.4   4.2e-101  338.0   0.0    1.9  2  VTC       VTC domain
    4.1e-11   43.4  12.3    7.3e-06   26.1   1.0    3.4  3  SPX       SPX domain
    1.4e-08   35.0   3.8    1.4e-08   35.0   3.8    1.8  2  DUF202    Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> VTC  VTC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.8     0.093   5.6e+02      81     140 ..      22      84 ..      14     138 .. 0.63
   2 !  338.0   0.0  7.1e-105  4.2e-101       1     274 [.     195     466 ..     195     467 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.093
                 ES-GGG-.-EEEEEEEE--------EEEEEEEE-GGGHHHHH---HHHHHHHHHHHHHT-....H CS
         VTC  81 ygkldne.dvflErktkheswtgesstkerftlkqkfvksyllgrlpaeerleklkkkee....e 140
                 y++l++e +  lE    + s++ e+s  e ++++ ++v+s++  + +  e +++ k+ ++     
  CCD23965.1  22 YDDLKKElEYNLEANNDEWSQDLETSFLEALEIELDKVYSFC--KVKHGEVVRRVKEVQQqvqhT 84 
                 888888899999999997777888999999999999999999..333334444444444422121 PP

  == domain 2  score: 338.0 bits;  conditional E-value: 7.1e-105
                 --EEEEEEE-HHHHHHHHHHHHTTS-B----------------------EEEEEEE-TT-HHHHHHHHT-TT--EEEEEEES-GGG--EEEEEEEE--- CS
         VTC   1 nrnetKywvhsdnvvevktlilkhlpvlvygaseeeiaaallrksadqtitsvYfDnndfelyenrilkmegaekiRlRwygkldnedvflErktkhes 99 
                 +r++tKywvh+dn++e+k  ilkhlpvlv+++++e        +++d++its+YfDn++++ly+ r++k egae  RlRwyg +d++++f+Erkt++e+
  CCD23965.1 195 VRQTTKYWVHPDNITELKLIILKHLPVLVFNTNKEF-------EREDSAITSIYFDNENLDLYYGRLRKDEGAEAHRLRWYGGMDSDTIFVERKTHRED 286
                 69*****************************98888.......89****************************************************** PP

                 -----EEEEEEEE-GGGHHHHH---HHHHHHHHHHHHHT-..HHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEEEE--TT--SEEEEEEEEEEEEE- CS
         VTC 100 wtgesstkerftlkqkfvksyllgrlpaeerleklkkkee..ekevekleqlaeeiqntilrnslqPvvrtsYlRaaFqlstdnavRitiDtnlcmvre 196
                 wtge+s k+rf+lk+++v+++++g++++ + + k++k+++   k++e+le la+eiq+ il ++l+Pvvr  Y+R+aFql++d +vRi++Dt+l+mvre
  CCD23965.1 287 WTGEKSVKARFALKERHVNDFIKGKYTVPQVFAKMRKEGKksLKDIENLEALASEIQYAILSRKLRPVVRSFYNRTAFQLPGDARVRISLDTELTMVRE 385
                 **************************************99766899***************************************************** PP

                 ---SSSS-SS-TSS-SSTTSS-TTTT--GGGEEE--SEEEEEEE--...----HHHHHHHTSTT-EE-TT--HHHHHHHHH CS
         VTC 197 dsfeerrkledtwerldedvqqpvkllrkgevvrfpyavlEvKlqt...skspewiqeLlashlvievpkfSKYqhgvasl 274
                 dsf+  ++++ +w+r+d++v+ p+k l++++v+rfpyavlEvKlqt   ++ pew++eL+ shlv++vpkfSK++hgva+l
  CCD23965.1 386 DSFDGVDRTHGNWRRTDIGVDWPFKQLDDKDVCRFPYAVLEVKLQTqlgQEPPEWVRELVGSHLVEPVPKFSKFIHGVATL 466
                 ************************************************99*****************************98 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.7   0.00074       4.4       1      29 [.       1      29 [.       1      39 [. 0.94
   2 !   16.4   0.3   1.1e-06    0.0068     182     224 ..      44      87 ..      30     100 .. 0.86
   3 !   26.1   1.0   1.2e-09   7.3e-06     349     373 ..     115     139 ..     111     146 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00074
         SPX  1 MKFakeLeenlvpEWrdaYldYkqLKKlI 29
                MKF+++L  +l+      Y+ Y+ LKK +
  CCD23965.1  1 MKFGETLRKSLIRQYSYYYIAYDDLKKEL 29
                ***************************65 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.1e-06
         SPX 182 aekeFferLdseLnkvetFykakeeefterlesLrkqleal.rp 224
                  e+ F+e L  eL+kv +F k k  e+++r+++ ++q++   r+
  CCD23965.1  44 LETSFLEALEIELDKVYSFCKVKHGEVVRRVKEVQQQVQHTvRQ 87 
                 5899**********************************998554 PP

  == domain 3  score: 26.1 bits;  conditional E-value: 1.2e-09
         SPX 349 lLKsYqeLNrtAFrKIlKKfDKvta 373
                 +L ++++LN t+F KI KK+DK t+
  CCD23965.1 115 DLAKFSRLNYTGFQKIIKKHDKKTG 139
                 799********************97 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.7     1e+04       8      17 ..     393     402 ..     392     404 .. 0.82
   2 !   35.0   3.8   2.4e-12   1.4e-08       1      65 [.     633     692 ..     633     695 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.7
      DUF202   8 RTfLaWlRts 17 
                 RT   W+Rt 
  CCD23965.1 393 RTHGNWRRTD 402
                 99999***95 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 2.4e-12
      DUF202   1 rdglAnERTfLaWlRtslalialglallrffltgepsalgkilglilivlgiltllvglvrylrr 65 
                 ++++A ERT+L+W++++++l++++ +ll     g p++  ++++++++v++++tl+ ++  y  r
  CCD23965.1 633 KVYFATERTYLSWVSIAILLGGVSTTLLT---YGTPTT--MLASIGFFVTSLITLFHAVKVYATR 692
                 689*************************9...699988..9***************999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5035.81
//
Query:       CCD23966.1  [L=416]
Description: hypothetical protein NDAI_0C03060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-38  130.1   1.0      1e-37  128.9   1.0    1.7  1  Mad3_BUB1_I    Mad3/BUB1 homology region 1
    1.2e-22   79.9   1.2      3e-22   78.6   0.2    2.3  2  Mad3_BUB1_II   Mad3/BUB1 homology region 2
  ------ inclusion threshold ------
      0.014   15.6   0.3      0.037   14.2   0.3    1.7  1  Mad3_BUB1_I_2  Putative Mad3/BUB1 like region 1 protein


Domain annotation for each model (and alignments):
>> Mad3_BUB1_I  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   1.0   1.7e-41     1e-37       3     124 .]      52     181 ..      50     181 .. 0.97

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 1.7e-41
                  HHHHHHHHHTG.....-THHHHHHHHHHHHHH-TT..-T.TT-HHHHHHHHHHHTTTSGGGTT-HHHHHHHHHHHTTS.....S-HHHHHHHHHHHTT CS
  Mad3_BUB1_I   3 rqefeeeleea.eegdDpLelwlryikwieesypq..sskesgllellerclkkfkdderYknDpRylklwlkyadlv.....eepreifkflaskki 92 
                  ++ +e++l ++ ++ dDpL+l+l+yi+ i++ ypq  ssk+sg+le++ercl++f+++e+Y+nD Ryl++wl+y++++     +e++ if f++++ki
   CCD23966.1  52 KKYYERRLIDElDTFDDPLALHLEYINAINNLYPQgaSSKQSGMLEIIERCLMQFQNSEKYRNDIRYLEMWLWYIEIFfpdepQEEQYIFVFMLRNKI 149
                  788999999999*************************99*************************************888*99999999********** PP

                  STTBHHHHHHHHHHHHHTT-HHHHHHHHHHH. CS
  Mad3_BUB1_I  93 GtklalfYeewAellekkgrfkeAeevyelGi 124
                  G+ lalfY ++++ll +++r++eA ++++lGi
   CCD23966.1 150 GSGLALFYDSFSSLLIEMKRYDEAAQLLRLGI 181
                  *******************************8 PP

>> Mad3_BUB1_II  Mad3/BUB1 homology region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.1   6.8e+03       3       3 ..     271     271 ..     260     295 .. 0.52
   2 !   78.6   0.2     5e-26     3e-22       1      64 [.     325     385 ..     325     389 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.1
                   X CS
  Mad3_BUB1_II   3 p 3  
                   +
    CCD23966.1 271 N 271
                   2 PP

  == domain 2  score: 78.6 bits;  conditional E-value: 5e-26
                   XXXXXXX...XXXX-----EEE--TTS--EEESS-HHHHSTTSSS---HHHHHHHHTT-SSXXX CS
  Mad3_BUB1_II   1 KlpiFkDesnskgrsdpvyklieikgkkpEkidcNfeLlYpedeeEfsieeiLAisRglykkkr 64 
                   K+pi++D   + gr++pvyk ie+ + k EkidcNf L Y+ +++E++ieeiLAisR+ly +++
    CCD23966.1 325 KIPIYTD---HFGRTEPVYKYIETINSKAEKIDCNFGLFYEVSGNEYCIEEILAISRNLYTRDK 385
                   9******...**************************************************9986 PP

>> Mad3_BUB1_I_2  Putative Mad3/BUB1 like region 1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   6.2e-06     0.037       7      92 ..     109     200 ..     103     216 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.2e-06
  Mad3_BUB1_I_2   7 ipyfrnnpsyiekwkel...Y...kktkdlkilfLmklKkIskfyyfvYlelsryFlkkgkkeaalfiLqegiknkvydkeilkeelksikk 92 
                       +rn+  y+e w  +   +   + +++  i   m   kI++  +  Y  +s+  ++ +  + a  +L+ gi+++  ++ +l ++l+s+++
     CCD23966.1 109 SEKYRNDIRYLEMWLWYieiFfpdEPQEEQYIFVFMLRNKIGSGLALFYDSFSSLLIEMKRYDEAAQLLRLGIREHSKPAYLLINRLQSLEC 200
                    566899999999997652223222234457788899999************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2933.08
//
Query:       CCD23967.1  [L=321]
Description: hypothetical protein NDAI_0C03070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-67  225.0  25.4    6.8e-67  225.0  25.4    1.7  2  Mer2          Mer2
  ------ inclusion threshold ------
      0.035   13.9   9.2      0.072   12.9   9.2    1.5  1  DUF1351       Protein of unknown function (DUF1351)
       0.15   12.5   6.4        3.2    8.3   3.4    3.0  2  Cep57_MT_bd   Centrosome microtubule-binding domain of Cep57
       0.37    9.1   4.3       0.49    8.7   4.3    1.2  1  Mem_trans     Membrane transport protein
        1.8    8.8  21.9        1.6    8.9  13.9    2.8  2  Fib_alpha     Fibrinogen alpha/beta chain family
        3.2    6.7   6.9        4.9    6.1   6.9    1.3  1  BPL_N         Biotin-protein ligase, N terminal
        4.1    7.5  12.9        2.5    8.2   2.2    3.2  3  DUF2959       Protein of unknown function (DUF2959)
        5.3    7.1   5.6        1.1    9.3   1.0    2.1  2  ID            Intracellular delivery domain
        7.2    7.0  14.1       0.28   11.5   4.2    3.0  3  KxDL          Uncharacterized conserved protein


Domain annotation for each model (and alignments):
>> Mer2  Mer2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.0  25.4   3.4e-70   6.8e-67       1     193 []      18     204 ..      17     204 .. 0.99
   2 ?   -1.1   0.1       0.7   1.4e+03      70     101 ..     239     269 ..     211     312 .. 0.57

  Alignments for each domain:
  == domain 1  score: 225.0 bits;  conditional E-value: 3.4e-70
        Mer2   1 StdisSpvkssgslnsgakklsEaDKqILeWAgKLELEsvdLrEksskLinvlkenskeLlkvisklnellidlkeeesdnskekeikdlikdLsvkie 99 
                 S+ isSpv+s  s+ns+  kl+EaDK+IL+WAgKLELEs+dLrEkss+Li++lk+ns++L++vis+lne++i++k+    n+ +k ik+l k+L++ ++
  CCD23967.1  18 SIVISSPVRS--SHNSSPLKLNEADKEILKWAGKLELESCDLREKSSELIGLLKKNSTQLTSVISTLNEIVISTKK----NAVMKLIKKLEKQLTI-VQ 109
                 7889******..9**************************************************************9....9***************.** PP

        Mer2 100 nqlskvskavldklkvkkhksntdtksnLte.llekkeakileeidkkqtkleksvdttqelllnvnkQledvnevllSlskdlenlstrqtale 193
                 nq+ +++++v+++++ ++++++tdtksnL++ +lek +ak++++id+k+++++ks+++tq++l+nvnkQl+d+ +vllS+s+dl++ls+rq++le
  CCD23967.1 110 NQKVQSQNVVNKTVTLRSKRQRTDTKSNLEQdELEKLTAKFRRNIDDKHRQIIKSNECTQSMLFNVNKQLQDMGDVLLSMSNDLQTLSQRQSTLE 204
                 ******************************99*************************************************************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.7
        Mer2  70 llidlkeeesdnskekeikdlikdLsvkienq 101
                 +l  +++e+ ++s+ + i    k++++ ++n 
  CCD23967.1 239 ELKRIQNENIKASSFGPITRSRKQMNS-MKND 269
                 444455555555555555555555554.3332 PP

>> DUF1351  Protein of unknown function (DUF1351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   9.2   3.6e-05     0.072      74     206 ..      57     193 ..      35     197 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.6e-05
     DUF1351  74 Feakikelekkikeaidkideqikefeekekeekkkevkaliselaeeae.veleeieiqekwlnktvslkkieeeieaakaekikkdreelekakaei 171
                   +k +el++++k+ ++++++ i  + e     kk++v +li++l +++  v+ +++  +++  nktv+l++ ++   ++k +    +++elek  a++
  CCD23967.1  57 LREKSSELIGLLKKNSTQLTSVISTLNEIVISTKKNAVMKLIKKLEKQLTiVQNQKV-QSQNVVNKTVTLRSKRQRT-DTKSNL---EQDELEKLTAKF 150
                 5678899*******************************************8999999.8999**********99999.666655...445666666665 PP

     DUF1351 172 eekaka........feleasaylrllkegkslsdvlkqidade 206
                 + ++++         e ++s   ++ k+ +++ dvl  + +d 
  CCD23967.1 151 RRNIDDkhrqiiksNECTQSMLFNVNKQLQDMGDVLLSMSNDL 193
                 5555554444766777888888888888888888888888775 PP

>> Cep57_MT_bd  Centrosome microtubule-binding domain of Cep57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.4    0.0016       3.2       8      59 ..      89     140 ..      86     163 .. 0.91
   2 ?    3.7   0.0     0.043        85      14      44 ..     183     213 ..     175     223 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
  Cep57_MT_bd   8 spkeaLaevlkeLedEfehlklelqelaaqynaldpslgkrkRkdLaeelee 59 
                  + k+a  +++k+Le++++  + +  + +   n++    +kr+R+d +++le+
   CCD23967.1  89 TKKNAVMKLIKKLEKQLTIVQNQKVQSQNVVNKTVTLRSKRQRTDTKSNLEQ 140
                  5688999****************************888********999985 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.043
  Cep57_MT_bd  14 aevlkeLedEfehlklelqelaaqynaldps 44 
                   +vl  + ++++ l+ + ++l+  +n+ ++ 
   CCD23967.1 183 GDVLLSMSNDLQTLSQRQSTLENGMNSINSN 213
                  57999******************99999844 PP

>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.3   0.00025      0.49     115     232 ..      64     183 ..      63     254 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00025
   Mem_trans 115 lkalygeygvslmvqvvvlqciiiytlll...flfeyrgaklliseefpdtaasivsikvdsdvvsldgrk.pletea..eikedgklhvtvrksna.s 206
                 l +l ++++++l++++++l+ i+i t       l+++ +++l+i +++     +++s++v ++ v+l +++    t    e +e +kl  + r++ + +
  CCD23967.1  64 LIGLLKKNSTQLTSVISTLNEIVISTKKNavmKLIKKLEKQLTIVQNQ-----KVQSQNVVNKTVTLRSKRqRTDTKSnlEQDELEKLTAKFRRNIDdK 157
                 6789999******************97651116666666666664444.....4556666666666665553444444115556677777777765505 PP

   Mem_trans 207 rsdivssstprpsnltnaeiyslqmt 232
                  ++i+ s +  +s l n  ++  +m 
  CCD23967.1 158 HRQIIKSNECTQSMLFNVNKQLQDMG 183
                 55555566667777777666666554 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  13.9   0.00078       1.6      26     106 ..      87     163 ..      81     184 .. 0.71
   2 ?    4.3   1.7     0.021        42      27      67 ..     176     216 ..     168     272 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00078
                 CCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHH CS
   Fib_alpha  26 llkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirv 106
                 ++++++ v k ++kle++l+ ++n++ +++++v+++ +   ++q+++++     +  ++ele+  ++++++id++ ++i +
  CCD23967.1  87 ISTKKNAVMKLIKKLEKQLTIVQNQKVQSQNVVNKTVTLRSKRQRTDTK----SNLEQDELEKLTAKFRRNIDDKHRQIIK 163
                 677889999*****************************99999999885....3333455665566666666666655543 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.021
                 CCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  27 lkyekdvkkdlekleneleeisnstkeaeelvkeikdslre 67 
                 +k+ +d+ + l ++ n+l+++s+++++ e+ +++i++ + +
  CCD23967.1 176 NKQLQDMGDVLLSMSNDLQTLSQRQSTLENGMNSINSNISR 216
                 56677777777777888888888877777777777665544 PP

>> BPL_N  Biotin-protein ligase, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.9    0.0025       4.9     239     362 ..      32     165 ..      15     182 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0025
       BPL_N 239 vveeleadekaRleflkal.LtklgLevn..........eeeeetevpslsplllsslskeeveelleslkeklaaekeeeeevikdendtfrlekede 326
                    +l++++k+ l++  +l L++ +L+ +          ++++ t+v s  + +++s++k+ v +l+++l+++l++ ++++ ++ +  n t+ l ++++
  CCD23967.1  32 SPLKLNEADKEILKWAGKLeLESCDLREKsseligllkkNSTQLTSVISTLNEIVISTKKNAVMKLIKKLEKQLTIVQNQKVQSQNVVNKTVTLRSKRQ 130
                 55566677777777664433666666666555555554322233444444444667777777899*******999997666677777788999988885 PP

       BPL_N 327 eeaeeaaeeeeeeked.leevvkeilvvkeeeelpsk 362
                 + ++++++ e++e e+ + +  ++i   k+++ + s+
  CCD23967.1 131 R-TDTKSNLEQDELEKlTAKFRRNI-DDKHRQIIKSN 165
                 4.44555555555344244445555.22222333333 PP

>> DUF2959  Protein of unknown function (DUF2959)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.2    0.0013       2.5     114     169 ..      57     112 ..      34     128 .. 0.80
   2 ?    1.0   1.1      0.21   4.1e+02     116     175 ..     156     220 ..     132     227 .. 0.53
   3 ?    3.9   0.0     0.027        53      92     126 ..     237     271 ..     234     278 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0013
     DUF2959 114 trkkykellkamkkaekkmePvlaalkdqvlfLKhnlNaqaiaalkgelselekdv 169
                  r+k +el+  +kk +++++ v+++l++ v+  K n   + i+ l+++l+ ++++ 
  CCD23967.1  57 LREKSSELIGLLKKNSTQLTSVISTLNEIVISTKKNAVMKLIKKLEKQLTIVQNQK 112
                 478899******************************************99998764 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.21
     DUF2959 116 kkykellkamkkaekkmePvlaalkd...qvlfLKhnlN..aqaiaalkgelselekdvsklike 175
                  k+++++k+ + +++ +  v ++l+d     l +  +l   +q  ++l++ ++++++++s+l+++
  CCD23967.1 156 DKHRQIIKSNECTQSMLFNVNKQLQDmgdVLLSMSNDLQtlSQRQSTLENGMNSINSNISRLMTR 220
                 34444444444444444444333333110344455555422456677888888888888888765 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.027
     DUF2959  92 eeeldqyssaslrreSeqklketrkkykellkamk 126
                 e+el+++++++++++S   ++++rk+ +++ + +k
  CCD23967.1 237 EDELKRIQNENIKASSFGPITRSRKQMNSMKNDVK 271
                 68************************999987765 PP

>> ID  Intracellular delivery domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.0   0.00057       1.1      20      47 ..      76     103 ..      70     104 .. 0.88
   2 ?   -1.6   0.2       1.4   2.8e+03      34      46 ..     135     147 ..     133     148 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00057
          ID  20 sfaIntkddlVickkeelepeqLktLkk 47 
                 + +I+t + +Vi+ k++   +++k+L k
  CCD23967.1  76 TSVISTLNEIVISTKKNAVMKLIKKLEK 103
                 569**********************986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.4
          ID  34 keelepeqLktLk 46 
                 k++le++ L++L+
  CCD23967.1 135 KSNLEQDELEKLT 147
                 89*********98 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.5      0.68   1.4e+03      22      67 ..      65     108 ..      54     117 .. 0.55
   2 ?   -1.4   3.1       1.5     3e+03      48      48 ..     122     122 ..      81     154 .. 0.48
   3 ?   11.5   4.2   0.00014      0.28      18      76 ..     147     205 ..     135     211 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.68
        KxDL  22 sgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesi 67 
                  g l+k + +L+ ++  ++e + +++++    +kl+k++ k+L  +
  CCD23967.1  65 IGLLKKNSTQLTSVISTLNEIVISTKKN--AVMKLIKKLEKQLTIV 108
                 4455555555555555555544444443..3455555555555554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.5
        KxDL  48 a 48 
                 +
  CCD23967.1 122 T 122
                 1 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00014
        KxDL  18 QaqtsgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslka 76 
                  a+    + +k+r++ + n+ +q+ l ++++++++   +l ++ +dL+++ ++ ++l+ 
  CCD23967.1 147 TAKFRRNIDDKHRQIIKSNECTQSMLFNVNKQLQDMGDVLLSMSNDLQTLSQRQSTLEN 205
                 567788999******************************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2837  (0.158235); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 2133.92
//
Query:       CCD23968.1  [L=120]
Description: hypothetical protein NDAI_0C03080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-09   36.4   1.6    3.1e-09   36.4   0.1    1.7  2  LSM       LSM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   1.7e-13   3.1e-09       2      64 ..       4      63 ..       3      66 .. 0.89
   2 ?   -1.6   0.1      0.12   2.2e+03      38      48 ..      70      84 ..      69     106 .. 0.61

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 1.7e-13
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEGGGEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRGnnivl 64
                +lk+++nkk+++++  g ++   L+g+D++ Nl+ +dv  + +dk  +   +  ++RG+ iv+
  CCD23968.1  4 LLKDYLNKKIVIITVEGSCYLAMLEGYDKYTNLIVSDVRNRFDDK-LI--SQFQMLRGSEIVT 63
                79**************************************99886.33..345899***9997 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.12
                EEEEEETTET....E CS
         LSM 38 dveetlkdkk....e 48
                +++et+++++     
  CCD23968.1 70 ETKETDEKEEfnkeA 84
                566666665554331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 907.67
//
Query:       CCD23969.1  [L=242]
Description: hypothetical protein NDAI_0C03090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-42  145.2   0.0    2.6e-42  144.9   0.0    1.1  1  Aldolase_II  Class II Aldolase and Adducin N-terminal domain


Domain annotation for each model (and alignments):
>> Aldolase_II  Class II Aldolase and Adducin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.0   1.4e-46   2.6e-42       2     185 ..      21     220 ..      20     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 1.4e-46
                  HHHHHHHHHHHTTSSCTTBCEEEEEETSTTEEEEEBTSS-GGGHTGGGEEEEETTSCEEEECECSSSTB-TTHHHHHHHHHH-TT-SEEEEE--HHHH CS
  Aldolase_II   2 elaeasrllarrglvegtgGniSvrvpeedsflitpsgvdfeeltaedlvvvdldsgevvegkekggkpssetplHlaiykarpdaravvHtHspaav 99 
                   +++++++++++++++gtgG iS+++p +++++ +psgv++e++++ed++v+d ++ e +     ++kps++tpl+la+yk+r +a+ ++HtHs++a 
   CCD23969.1  21 LICTLCEQFFHNNWCTGTGGGISMKHPTTNHYYLAPSGVQKEQMKPEDIFVMDSQTLEYLRV-PPKYKPSACTPLFLACYKKR-NAGGIIHTHSQNAD 116
                  689**********************98899**********************9886677755.67899*************85.************** PP

                  HHHTCC..........STSCHCC.....SSHHHHC.HSS..SEEEEES-SSTTCHHHHHHHHHHHH.H.S-SEEEETTTEEEEEESSHHHHHHHHHHH CS
  Aldolase_II 100 alsala..........gkeglpp.....ltqeaaklllg..devpvipyaapgteelgealaealk.e.dakavllrnHGlltvGetleeAvalaetl 178
                  ++s+++          +++ +p+     +t +   l +    ++p+i++ a++++++ ++l + l+ + +++av++r+HG++++G+t+++A+ + e++
   CCD23969.1 117 VCSLIFkdqlkianieQIKAIPSgnidpTTGKDISLSFFdtLSIPIIENVAHEEDLI-DSLNDVLDkNpHTCAVIVRRHGIFVWGPTIDKAKIYNEAI 213
                  ***6559999999888444444466433333333333336999********999999.*******9647889************************** PP

                  HHHHHHH CS
  Aldolase_II 179 eeaaeiq 185
                  ++++e++
   CCD23969.1 214 DYLMELA 220
                  ***9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1766.96
//
Query:       CCD23970.1  [L=875]
Description: hypothetical protein NDAI_0C03100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0015   18.6   0.2        2.3    8.7   0.0    4.6  4  HEAT            HEAT repeat
      0.009   16.6   0.0        4.6    7.9   0.0    2.7  2  Vac14_Fab1_bd   Vacuolar 14 Fab1-binding region
  ------ inclusion threshold ------
      0.014   15.2   0.1      0.055   13.2   0.1    2.0  1  Thrombin_light  Thrombin light chain


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.11   6.4e+02       3      19 ..      14      29 ..      13      32 .. 0.78
   2 ?   -0.9   0.0      0.49   2.9e+03       8      27 ..      67      86 ..      61      88 .. 0.78
   3 ?    2.1   0.0     0.051   3.1e+02       2      27 ..     196     221 ..     195     224 .. 0.86
   4 !    8.7   0.0   0.00039       2.3       1      30 [.     513     542 ..     513     543 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.11
                HHHHHHHT-SSHHHHHH CS
        HEAT  3 PlllkllsDpspeVRea 19
                Pl l+ l+++ ++ R +
  CCD23970.1 14 PL-LERLQHKVWKARLN 29
                55.5558******9975 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.49
                HHT-SSHHHHHHHHHHHHHH CS
        HEAT  8 llsDpspeVReaAakaLgal 27
                 ++D++    e+A++aL al
  CCD23970.1 67 FITDSNVVAQENAILALEAL 86
                4588888899*******988 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.051
                 HHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgal 27 
                 + +l++l ++ + +VR+ +++ ++++
  CCD23970.1 196 VTPLITLANHADKNVRAETLNLIVNI 221
                 56789999*********999999887 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00039
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 ++P +++  +D+ p++R+  +++L+ l+++
  CCD23970.1 513 IIPSVVHIVNDTQPNIRSIGFECLAILIKI 542
                 799****99***************999886 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0043        26      18      71 ..     185     238 ..     168     256 .. 0.80
   2 !    7.9   0.0   0.00078       4.6      23      63 ..     508     548 ..     499     560 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0043
  Vac14_Fab1_bd  18 ekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifd 71 
                    + +i+++l ++v+p+++  + +d+ vR  +   + ni  ++  + l l   ++d
     CCD23970.1 185 NVQIQTMLPQLVTPLITLANHADKNVRAETLNLIVNIFNTTGRNKLVLQDLLLD 238
                    456999*********************999999999998887777665555555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00078
  Vac14_Fab1_bd  23 eyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevl 63 
                    +  e+i+++v+++++D++  +R    E+l  ++k++  + l
     CCD23970.1 508 HLNEDIIPSVVHIVNDTQPNIRSIGFECLAILIKILGMRPL 548
                    56689************************999998876655 PP

>> Thrombin_light  Thrombin light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   9.2e-06     0.055      22      46 ..     544     568 ..     543     569 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.2e-06
                     T--TTTGGGT---TTHHHHHHHHHC CS
  Thrombin_light  22 GlRPLFEkkskkDktEkeLLeSYie 46 
                     G+RPL E ++k D++Eke +eS i+
      CCD23970.1 544 GMRPLNETMEKLDNQEKEKIESLID 568
                     99*******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (875 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2151  (0.119973); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.50
# Mc/sec: 5295.23
//
Query:       CCD23971.1  [L=564]
Description: hypothetical protein NDAI_0C03110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-33  113.9   0.0    1.1e-32  113.0   0.0    1.4  1  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    1.1e-27   96.4   0.0    4.2e-27   94.5   0.0    2.0  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
    1.1e-14   54.5   0.0    2.1e-14   53.6   0.0    1.5  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
  ------ inclusion threshold ------
        0.1   12.8   0.0       0.23   11.7   0.0    1.5  1  DUF3234       Protein of unknown function (DUF3234)


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.0   2.5e-36   1.1e-32       2     169 ..       5     177 ..       4     179 .. 0.92

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 2.5e-36
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   t++++l+++L++ +v+++fg+pG+ +l+lld++ e +g+r+    +E +aa+aAdgyar++g + ++++t g+G ++al+++a+ + +++ +l+++g
    CCD23971.1   5 TLGRYLFERLSQVDVKTIFGLPGDFNLSLLDKIYETPGMRWAGNANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVG 100
                   8899********************************************************97.99999999************************** PP

                   E--CCCHH.....S..TC--T..-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N  99 drptslrg.....qgvlqqel..dqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                    +++s++      +++l +        + +++ + +  vt+ +++p +++r+irt  + +++Pvyl lp+++++ +v+
    CCD23971.1 101 VPSVSSQAkqlllHHTLGNGDftVFHRMSANISETTAMVTDIATAPAEIDRCIRTT-YVTQRPVYLGLPANLVDLKVP 177
                   ********9777766666444555566677**************************.***************988776 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.0   9.4e-31   4.2e-27       2     125 ..     202     325 ..     201     336 .. 0.90
   2 ?   -2.3   0.0      0.76   3.4e+03       4      23 ..     428     447 ..     426     454 .. 0.82

  Alignments for each domain:
  == domain 1  score: 94.5 bits;  conditional E-value: 9.4e-31
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   + ++el+k ak+pvil++  ++r+++++e ++l++ +++P + t+mgkg+i+e+hp++ g ++g ++s+a++ea+e+aDl+l +Ga ++d++t gs+
    CCD23971.1 202 NTILELIKDAKNPVILADACASRHDVKAETKKLIDITQFPSFVTPMGKGSIDEQHPRFGGvYVGTLSSPAVKEAVESADLILSVGALLSDFNT-GSF 297
                   6899**************************************************************************************655.555 PP

                   T.TTTTT-EEEEEESSCCCCTTCC--SEE CS
  TPP_enzyme_M  98 p.efapeakiihididpaeigknyqvdla 125
                   +  ++  ++i+++++d  +i+++  + ++
    CCD23971.1 298 SySYK-TKNIVEFHSDYIKIKNATFPGVQ 325
                   53544.448**********9998766555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.76
                   HHHHHHH-SSEEEEE-CHHC CS
  TPP_enzyme_M   4 aaellkaakrpvilvGggva 23 
                   aae +  +kr+++++G g  
    CCD23971.1 428 AAEEVDPKKRVILFIGDGSL 447
                   788888899*******9965 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   4.7e-18   2.1e-14      11     123 ..     397     505 ..     387     531 .. 0.73

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 4.7e-18
                   HHHTTSSSSEEEC..ETTTS-TTTHHHHHHHHHHH....STTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTT CS
  TPP_enzyme_C  11 rllkvkrprsylt..sgglgtmGyglpaAiGakla....kpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfggkrks 101
                   +  ++  p++++   + ++g++G++ +a +Ga++a    +p+++v+ ++GDG+++ ++qe++t+vr nl+  ++vlnN+gy   +  + p+ + ++ 
    CCD23971.1 397 QT-HF--PNNTYGisQVLWGSIGFTTGACLGAAFAaeevDPKKRVILFIGDGSLQLTVQEISTMVRWNLKPYLFVLNNNGYTIEKLIHGPTAQYNE- 489
                   43.33..344333337799***************55666889***************************************998877555544332. PP

                   TSBB.BS----HHHHHHHTTSE CS
  TPP_enzyme_C 102 gpagkdlkpvdfaklaealGak 123
                          ++ d+  l   +Gak
    CCD23971.1 490 ------IQSWDHLSLLPTFGAK 505
                   ......3344555555555555 PP

>> DUF3234  Protein of unknown function (DUF3234)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     5e-05      0.23      41      84 ..     254     297 ..     249     305 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5e-05
                 HTSTSS.--EEEEE-SHHHHHHHHHHHHHTT--EEEES-SSSSS CS
     DUF3234  41 ektpaaeGmrvgalesyalkeaylvalgllkveavlvgyqpGth 84 
                 e++p   G+ vg+l s a+kea   a  +l v a+l +++ G +
  CCD23971.1 254 EQHPRFGGVYVGTLSSPAVKEAVESADLILSVGALLSDFNTGSF 297
                 689************************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       410  (0.022868); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 4059.93
//
Query:       CCD23972.1  [L=332]
Description: hypothetical protein NDAI_0C03120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-72  240.9   0.1    6.2e-72  240.3   0.1    1.3  1  Gp_dh_C       Glyceraldehyde 3-phosphate dehydrogenase, C-ter
    2.7e-39  133.6   0.3    6.1e-39  132.4   0.1    1.7  2  Gp_dh_N       Glyceraldehyde 3-phosphate dehydrogenase, NAD b
  ------ inclusion threshold ------
      0.051   12.9   0.1        0.1   11.9   0.1    1.5  2  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
      0.081   13.0   0.0       0.26   11.4   0.0    1.9  1  DapB_N        Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.3   0.1   1.4e-75   6.2e-72       1     158 []     155     312 ..     155     312 .. 1.00

  Alignments for each domain:
  == domain 1  score: 240.3 bits;  conditional E-value: 1.4e-75
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-H CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtv 99 
                 Laplak++ndkfgi++glmttvh+ t++Qk++Dgps+kd+r +r+a+ niip+stgaakavg+Vlpel+gkl+g+A+rVPt++vsvvdl+v+l+ke+t+
  CCD23972.1 155 LAPLAKIINDKFGIEEGLMTTVHSQTATQKTVDGPSHKDWRGGRTASANIIPASTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKETTY 253
                 8************************************************************************************************** PP

                 HHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C 100 eevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivveenlvkvvawy 158
                 ee+++++k+aaeg+lkg++ yte+ +vssD++gd+hss+fda+++i+++ ++vk+vawy
  CCD23972.1 254 EEIKKVMKDAAEGPLKGVVCYTEDAVVSSDFIGDSHSSVFDATAGIQLSPKFVKLVAWY 312
                 **********************************************************9 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.1   1.4e-42   6.1e-39       2     100 ..       3     102 ..       2     103 .. 0.98
   2 ?   -3.1   0.0       2.2     1e+04      43      61 ..     259     277 ..     234     284 .. 0.53

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 1.4e-42
                 EEEEESTSHHHHHHHHHHHHHTTCEEEEEE-.TS-HHHHHHHHHEETTTEC-SS-EEEETTEEEETTEEEEEE--SSGGGS-CHHHTSSEEEE-SSS-- CS
     Gp_dh_N   2 kvainGfGRIGrlvlralleekelevvaind.ltdletlayllkyDsvhgrfkgeveaeeealvvngkkikvlaekdpeelpwkelgvdlVvestGvft 99 
                  vainGfGRIGr+vlr+++++k+++vvaind +++++++ay++kyDs+hgr+kgev+ ++++++v+g+ki++++e+dp++lpw++l++d V+estGvf+
  CCD23972.1   3 TVAINGFGRIGRVVLRVAMARKSMDVVAINDpFITNDYAAYMFKYDSTHGRYKGEVTNDDKHIIVDGHKIATFQERDPANLPWGDLKIDTVIESTGVFK 101
                 79*****************************99*****************************************************************8 PP

                 S CS
     Gp_dh_N 100 d 100
                 +
  CCD23972.1 102 E 102
                 6 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.2
                 HHEETTTEC-SS-EEEETT CS
     Gp_dh_N  43 lkyDsvhgrfkgeveaeee 61 
                 +  D + g +kg v ++e+
  CCD23972.1 259 VMKDAAEGPLKGVVCYTED 277
                 2345566666666655555 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   2.3e-05       0.1      38      70 ..       3      36 ..       1      54 [. 0.73
   2 ?   -3.2   0.0         1   4.6e+03      54      89 ..     225     260 ..     191     263 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.3e-05
                  EEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHH CS
  2-Hacid_dh_C 38 tvGiiGlGrIGqavakrlk.afgmkviaydrskk 70
                  tv+i G+GrIG+ v +++     m+v+a++    
    CCD23972.1  3 TVAINGFGRIGRVVLRVAMaRKSMDVVAINDPFI 36
                  99**************998466789888765444 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1
                   HHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHH CS
  2-Hacid_dh_C  54 rlkafgmkviaydrskkkeeeeeelgvelvsleell 89 
                   +l+++ ++v  +d+s  + + + +++ +++++++++
    CCD23972.1 225 KLTGMAFRVPTVDVSVVDLTVKLAKETTYEEIKKVM 260
                   455555555555555443332222233455555555 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.7e-05      0.26       2      33 ..       3      33 ..       2      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.7e-05
                EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEE CS
      DapB_N  2 kvavvGasGrmGkevvkaveeaedlelvaavd 33
                 va++G+ Gr+G+ v++++ +++++ +va  d
  CCD23972.1  3 TVAINGF-GRIGRVVLRVAMARKSMDVVAIND 33
                69*****.*******************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2504.55
//
Query:       CCD23973.1  [L=250]
Description: hypothetical protein NDAI_0C03130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.1e-25   87.2   0.3    1.4e-13   50.6   0.0    2.4  3  Ribosomal_S2  Ribosomal protein S2
  ------ inclusion threshold ------
      0.054   14.8  12.2       0.11   13.8  12.2    1.6  1  40S_SA_C      40S ribosomal protein SA C-terminus


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0     1e-12   9.1e-09       1      98 [.      17     112 ..      17     116 .. 0.90
   2 !   50.6   0.0   1.5e-17   1.4e-13     147     212 ..     116     181 ..     111     183 .. 0.94
   3 ?   -2.8   0.0      0.33     3e+03     153     168 ..     203     218 ..     192     237 .. 0.59

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1e-12
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIyger.ngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNf 96 
                   LL+a++h+G  +r+++ + +py++++r +g+ +i++ kt ++l  a++++  +  + + ++ ++++   ++av + a+ +++  +  r+++G +TN+
    CCD23973.1  17 LLAANTHLG--ARNVQVHQEPYVFNTRpDGVNVINVGKTWEKLVLAARIIAAIP-NPEDVVAISSRTYGQRAVLKYAAHTGATPIAGRFTPGNFTNY 110
                   89*******..677788899****999679********************9765.677888999999999999999999*****************8 PP

  Ribosomal_S2  97 kt 98 
                    t
    CCD23973.1 111 IT 112
                   65 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 1.5e-17
  Ribosomal_S2 147 klPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIpaNddsirsiklilgvladai 212
                   k P lv+v+dp+++  a+kEa+ +++pvia++D ++  + vd +Ip+N+    si li  +la+ +
    CCD23973.1 116 KEPRLVIVTDPRSDAQAIKEASYVNVPVIALTDLDSPSEYVDVAIPCNNRGRHSIGLIWYLLAREV 181
                   78************************************************************9987 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.33
  Ribosomal_S2 153 vvldpkkekiavkEak 168
                   +  +p++ +   +Ea+
    CCD23973.1 203 FYRNPEEAEQTTEEAT 218
                   5555555555555544 PP

>> 40S_SA_C  40S ribosomal protein SA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8  12.2   1.3e-05      0.11       1      49 [.     202     245 ..     202     250 .] 0.69

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
    40S_SA_C   1 fFYRdPEeiekeeqaaaekalvkkee.qeewtapveftepevadWaeegv 49 
                 +FYR+PEe+e+    a e+a  ++ee +ee t     +++ +++Waee++
  CCD23973.1 202 YFYRNPEEAEQTTEEATEEA--GEEEtKEEAT----EEQAGASEWAEENA 245
                 9*********9988888887..4444244444....24567788886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.30s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1737.82
//
Query:       CCD23974.1  [L=705]
Description: hypothetical protein NDAI_0C03140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-21   75.1   6.0    4.9e-21   75.1   6.0    2.0  2  Ferric_reduct  Ferric reductase like transmembrane component
     0.0039   17.3   0.1     0.0097   16.0   0.1    1.6  1  FAD_binding_8  FAD-binding domain


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.3      0.93   8.3e+03       8      41 ..      51      83 ..      44     111 .. 0.60
   2 !   75.1   6.0   5.5e-25   4.9e-21       1     124 [.     128     240 ..     128     241 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.93
  Ferric_reduct  8 llplalllalRnnflepltglsldklllfHkwlg 41
                    +++ +ll lRn ++   + +s++ + l H  lg
     CCD23974.1 51 TIMICILLPLRNYLILTERFFSIS-HRLKHHILG 83
                   444444566777554322222222.233444444 PP

  == domain 2  score: 75.1 bits;  conditional E-value: 5.5e-25
  Ferric_reduct   1 lGiaalillplalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilait 96 
                    +G++a++++p +l+l+lR+++l    +  + +ll +Hkw++++++l +llH+ +yll+ ++       +++ ++lkk+ n++G++a+ll+i++ +t
     CCD23974.1 128 MGRIAVAMMPPLLFLSLRPSPLP---KTLYLSLLPIHKWISRIVVLESLLHTGFYLLYMQK-------KNSLQKLKKLPNIYGIIAMLLFIAIGAT 213
                    599****************7775...777888899*********************99885.......67999*********************** PP

  Ferric_reduct  97 SlkfirrrlsyelFyylHhllyvaylll 124
                    S++++r r +++lFyy+H  + ++ ++l
     CCD23974.1 214 SINPVR-RCNFRLFYYIHYSFTWMTVIL 240
                    ******.**************9999887 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.1e-06    0.0097      47      70 ..     320     347 ..     295     357 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.1e-06
  FAD_binding_8  47 fwqs....HPFtiasapeddklslvikv 70 
                    f+++    HPFtia+ p d+ ++l+i++
     CCD23974.1 320 FFKIipfqHPFTIATLPTDETIKLIIRN 347
                    44433333******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 5175.70
//
Query:       CCD23975.1  [L=574]
Description: hypothetical protein NDAI_0C03150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-62  210.9  41.2    3.5e-62  210.6  41.2    1.0  1  AA_permease_2    Amino acid permease
    2.4e-13   49.5  37.9    4.2e-13   48.7  37.9    1.3  1  AA_permease      Amino acid permease
  ------ inclusion threshold ------
        0.9    9.6   9.6        3.5    7.8   0.7    3.5  2  DUF2456          Protein of unknown function (DUF2456)


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.6  41.2   5.8e-66   3.5e-62       1     421 [.      79     524 ..      79     529 .. 0.86

  Alignments for each domain:
  == domain 1  score: 210.6 bits;  conditional E-value: 5.8e-66
  AA_permease_2   1 lsllsafalvigsvigsgifvknlaas...ggpalilwvwiavligslavllvyaElssalprsgGiyvytkaaf....gkkvaflsawfnwfayv 89 
                    +s+l++f+++++++  ++++++ ++++   gg ++++w+w+++  ++l v++ +aE +sa+p+ gG+y +t++      ++++ f+ +++n +a v
     CCD23975.1  79 FSTLQVFGIAFSIMGLLPSIAS-VMGTgisGGSVSFVWGWFIASFFILLVGISMAENASAIPTAGGLYYWTYYYApkgyKEVFSFIIGCSNSLALV 173
                    799***********99999887.45444559999***********************999***********9995444378888************ PP

  AA_permease_2  90 pvlasilsvaasyllnalgp....dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdg.ggfssl..... 175
                    ++l+si + +a+ ++ a+      d++ ++   y ++ a +i+ al ++++   +a++qni ++ +++++++++i+l++ t ++ g+f+++     
     CCD23975.1 174 AGLCSIDYGLAEEIMAAVVVtydgDFNITDGRLYAVFLASVIVMALCTSMASGVIARLQNISIVSNLFIIVLLFIALPVGTKHKrGTFNDAsfifg 269
                    **************8887443444888888888888888888888888889999****************************76368888888877 PP

  AA_permease_2 176 stetdtffpngwpgvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsn..lgsvaalffeav 267
                     +e+ + +++gw++ l g++ ++w+++ f+s+++ see+k   k vp++i+ +++ +++l++l+ i +++++ +   ++l++     +a+l ++ +
     CCD23975.1 270 GFENFSDWNGGWQFCLTGFMPAVWTIGSFDSCVHQSEEAKDakKSVPVGIIGSISACWILGWLIIICLMACIDPQLENVLDTqyGFPMAQLIYDSL 365
                    5555457889****************************9976478**************************998666555553322379******* PP

  AA_permease_2 268 ggkvvaiivvilialsllgaintavigssrvlealardgvlP..rffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliis 361
                    g+k+  ++++ l+a++ ++++++ ++++sr+++a++rd++lP  +++++v+    p+ ai   ++ sl+l+ll+l+ +++a n+l+s+++ g+++ 
     CCD23975.1 366 GKKWTIAFLS-LMAFCQFLMGCSICTAISRQIWAFSRDDGLPfsKYIKQVHNS-VPFFAILAACVSSLVLGLLCLI-DATAANALFSLAVAGNYLA 458
                    *999999999.9**************************************988.9************999998876.9****************** PP

  AA_permease_2 362 yllliigalilrkkrphlkrpgk.....ilvaiigalfllfllvalffppkgpa.tqssliytiil 421
                    ++ + +++l   ++  + + ++      ++v++ig+l+ +f++++ +fp++++  ++++++y++++
     CCD23975.1 459 WCTPTLLRLTSGRDIFRPGPFYLgkvlsPIVSWIGVLYEVFIIIMEMFPSQQHGiNKTNMNYACVI 524
                    *****9999666663333333333344489*******************9999858888****664 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7  37.9     7e-17   4.2e-13      20     388 ..     102     467 ..      80     548 .. 0.71

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 7e-17
  AA_permease  20 gvvlsqaGplgallayllagvviflvmlslgeiatngpksgg....fytyasrflgpelGfviGln......ylfswitvlaleltaasiliqfwelv 107
                    +  ++G ++ + ++ +a ++i+lv++s++e a+++p +gg    +y+ya +  ++ ++f iG +        +++i +  +e + a+ +++     
   CCD23975.1 102 MGTGISGGSVSFVWGWFIASFFILLVGISMAENASAIPTAGGlyywTYYYAPKGYKEVFSFIIGCSnslalvAGLCSIDYGLAEEIMAAVVVT----- 194
                  22344567778899****************************44444679****************555444444444444444455555555..... PP

  AA_permease 108 tdlpkawvt...........gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfa.ke 193
                          +            avfl+ ++++ l+   ++g +  + ++ ++  + + ++++i l +g k ++g     ++d+++if     +    + 
   CCD23975.1 195 --------YdgdfnitdgrlYAVFLASVIVMALCTSMASGVIARLQNISIVSNLFIIVLLFIALPVGTKHKRG----TFNDASFIFG----GFENfSD 276
                  ........045555555556999*9999999999999999966555555554444444444889999999999....8888888444....3333444 PP

  AA_permease 194 eegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvlapl 291
                    g  +  + +f+ +v ++ ++ + +  ++E+kd +ks+P +i+  +    i+  l++++++++++ +  ++l  +  +   f  ++   ++ + + +
   CCD23975.1 277 WNGGWQFCLTGFMPAVWTIGSFDSCVHQSEEAKDAKKSVPVGIIGSISACWILGWLIIICLMACIDPQLENVLD-TQYG---FPMAQLIYDSLGKKWT 370
                  4677888999********************************************************99988887.5555...6666666777777777 PP

  AA_permease 292 inaviltaalssansslysa..sRvlyslakdglaP..kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliil 385
                  i++++l+a    ++++++++  sR+++++++d+ +P  k+ k v  + vP  ail+ ++ sl++ ll  + +    + n l +++ + + + w+   l
   CCD23975.1 371 IAFLSLMAFCQFLMGCSICTaiSRQIWAFSRDDGLPfsKYIKQVH-NSVPFFAILAACVSSLVLGLLCLIDAT---AANALFSLAVAGNYLAWCTPTL 464
                  77777777777666666554339*************999999996.78*****************87766666...9999999999999999987666 PP

  AA_permease 386 syl 388
                    l
   CCD23975.1 465 LRL 467
                  555 PP

>> DUF2456  Protein of unknown function (DUF2456)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.7   0.00058       3.5      39      84 ..     121     166 ..      72     173 .. 0.70
   2 ?    5.3   1.0    0.0034        21      36      64 ..     321     352 ..     311     365 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00058
     DUF2456  39 iiflvlWpvtigilagigkklgsdyyfnntwapqviKlvygvvlgl 84 
                  +f++l  ++++  a+   + g+ yy+  ++ap+  K v+++++g 
  CCD23975.1 121 SFFILLVGISMAENASAIPTAGGLYYWTYYYAPKGYKEVFSFIIGC 166
                 233333344444444444445558********************95 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0034
     DUF2456  36 lsv.iiflvlWpvtigilagigkklgs..dyy 64 
                  s+ +++++ W + i ++a i+ +l +  d +
  CCD23975.1 321 GSIsACWILGWLIIICLMACIDPQLENvlDTQ 352
                 444258999************98887543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 4297.78
//
Query:       CCD23976.1  [L=1050]
Description: hypothetical protein NDAI_0C03160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-74  250.0  17.6    3.2e-74  250.0  17.6    3.5  6  CRM1_C         CRM1 C terminal
    6.1e-29  101.0   4.8    6.1e-29  101.0   4.8    4.6  5  Xpo1           Exportin 1-like protein
    7.5e-14   51.4   3.7      8e-14   51.3   0.5    2.9  3  IBN_N          Importin-beta N-terminal domain
    7.4e-12   45.2   0.5    5.9e-11   42.3   0.2    2.7  2  CRM1_repeat_3  CRM1 / Exportin repeat 3
    4.9e-11   42.1   1.4    1.9e-10   40.3   1.4    2.1  1  CRM1_repeat_2  CRM1 / Exportin repeat 2
    0.00022   20.7   0.2    0.00083   18.8   0.2    2.1  1  CRM1_repeat    Chromosome region maintenance or exportin repe
  ------ inclusion threshold ------
      0.028   14.6   0.1       0.35   11.0   0.0    2.9  2  PAH            Paired amphipathic helix repeat


Domain annotation for each model (and alignments):
>> CRM1_C  CRM1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.19   4.9e+02     257     307 ..      56     110 ..      15     114 .. 0.73
   2 ?   -3.5   0.0       1.7   4.3e+03     103     116 ..     182     195 ..     148     213 .. 0.55
   3 ?   -2.1   0.1      0.67   1.7e+03      49      80 ..     279     324 ..     251     360 .. 0.63
   4 ?   -2.9   0.1       1.1   2.8e+03     211     228 ..     399     416 ..     373     459 .. 0.65
   5 ?   -2.5   0.2      0.85   2.2e+03       2      60 ..     555     612 ..     552     643 .. 0.68
   6 !  250.0  17.6   1.3e-77   3.2e-74       1     319 [.     701    1016 ..     701    1018 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.19
      CRM1_C 257 eeeqvtsnkvflseyvvellsnaFpnlsqkq...veafvvglfe.landlkkfke 307
                 +++++ ++k +  + + + +++++++l  +q   +++f+vg+++ l++d+++f+ 
  CCD23976.1  56 QDSKNDQTKFISLSILDNTIQKQWNTLPIEQklgIRNFLVGMIRsLCQDKNRFRA 110
                 33444445545556778889999988876665669******99627889999986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.7
      CRM1_C 103 lenlisdevpkile 116
                 l++ is++v +i++
  CCD23976.1 182 LKEAISNQVDQIFQ 195
                 22333333333333 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.67
      CRM1_C  49 kLietyiekae..............dleevlnnlveplleavLvdY 80 
                 ++++t+i+  +              d +ev ++ +  ++++ L  Y
  CCD23976.1 279 QIFDTVINMIKsshvpnksgllntnDSDEVFQESMIDFIKTFLIKY 324
                 4444444443334444444444444444444444444444455555 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.1
      CRM1_C 211 yylsllkevlkvltDtdh 228
                 +y + l+e  +++ D++ 
  CCD23976.1 399 FYQNYLSELSSIIIDNME 416
                 444445555555555443 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 0.85
      CRM1_C   2 lgkiyldllklyklvseliseavaaegeiatktpkvrllrtvkkeiLkLietyiekaed 60 
                 l++i  d++k+ k+ +el s+a  +   +++++ k  l+ ++  e L  ++t+i + e+
  CCD23976.1 555 LENIIIDIFKIIKAFTELQSMACDTF-MKIVQQCKYDLINSIWGEPLLFMKTIIGELEQ 612
                 56677777777777777777755544.34444567777777777777777777776664 PP

  == domain 6  score: 250.0 bits;  conditional E-value: 1.3e-77
      CRM1_C    1 QlgkiyldllklyklvseliseavaaegeiatktpkvrllrtvkkeiLkLietyiekaedleevlnnlveplleavLvdYkknvpeardaevLsllt 97  
                  Q++ iy +ll+ly l+++++++   + g ia+  ++++ l +++k iLkLie yi+k++  + ++n++++pl+e++L dYkk+ +e++++evL++lt
  CCD23976.1  701 QFQLIYPQLLQLYALTTSILRN---KCGSIASGISTLHDLLVIQKGILKLIELYISKSKSPHVIVNKFINPLFETILNDYKKEDAEMKNPEVLNCLT 794 
                  899*****************99...89********************************************************************** PP

      CRM1_C   98 tlveklenlisdevpkileavfectldmikkdfeeyPehrveFfellrainkkcfkallklpseqfklvidsivwafkHterdvaetgLnillellk 194 
                  ++v+k+++li+++v  ile  +ect++mi k+f +y e++   +e+++a +k+ f+++l+lp++    +++ i+wa++    +++++g +++ ++ +
  CCD23976.1  795 VIVTKVGSLIQEKVTLILEFFLECTVEMIDKNFDDYSEIQHCLYEFINATVKETFQSVLELPESYVGIFFKNILWAIQDPRSEIQDIGFQLANKITS 891 
                  ************************************************************************************************* PP

      CRM1_C  195 nvee.kkkeaanqFyknyylsllkevlkvltDtdhksgfklqaelLaklirlvesgsikvplleeeqvtsnkvflseyvvellsnaFpnlsqkqvea 290 
                  n+++ +++ ++ qFyk yyl+++ ++++v+tDt h+s f +q++lL++li++v ++++ ++l   ++   n+ +l++++++l+s+aFp++++ ++++
  CCD23976.1  892 NIHSlENTTFTLQFYKYYYLEFVCQTFSVMTDTCHQSEFVEQSILLMNLISMVFDNKVVIQLDS-NKLLGNEGYLRKFISSLISSAFPHVEDIEITN 987 
                  ***99999**********************************************9999998877.999***************************** PP

      CRM1_C  291 fvvglfelandlkkfkehlrDflislkef 319 
                  f+++l+ + +d++ f++ lrDfli+lke 
  CCD23976.1  988 FLNSLLVHLKDPSIFRRVLRDFLIQLKES 1016
                  ***************************95 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.1   2.8e+03      10      42 ..      35      65 ..      33      75 .. 0.72
   2 !  101.0   4.8   2.4e-32   6.1e-29       4     149 .]     114     256 ..     111     256 .. 0.96
   3 ?    2.1   0.0     0.073   1.9e+02     105     137 ..     742     775 ..     715     793 .. 0.85
   4 ?    0.5   0.0      0.23   5.8e+02      74     116 ..     802     842 ..     796     867 .. 0.77
   5 ?   -3.0   0.0       2.7   6.8e+03      26      37 ..     987     998 ..     965    1032 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
                HHHHHHHHHHTTTTSTTHHHHHHHHHCT.HHHH CS
        Xpo1 10 ealaelflqeypnnWpsffddllsllssspsgl 42
                +++ + f +e p +W sf+d++++ +++++++ 
  CCD23976.1 35 QIILDTFQKE-PYSW-SFIDKIIQDSKNDQTKF 65
                5666666666.7777.6********99987654 PP

  == domain 2  score: 101.0 bits;  conditional E-value: 2.4e-32
                 HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.HHHHHHHHHHHHHHHHHHHTSHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH CS
        Xpo1   4 lrnklaealaelflqeypnnWpsffddllsllssspsglelllriLkvlpeEiadfsrskleqerrndlkdllrsnvqkilelllqileqsqskkqsse 102
                 l++k +++l++++++e+p++W +f+++l+ l+s+ +++++++  iL++l+eEi+d   ++ +q +  +lk++++++v +i++ +++ile+  s    ++
  CCD23976.1 114 LLQKADLTLIDILKHEWPDHWDDFIPELTVLSSQTLEVCQNNVYILRLLSEEIFDLAPKRITQAKLLHLKEAISNQVDQIFQYFISILESTIS----PS 208
                 7899***************************************************999********************************998....9* PP

                 HHHHHHHHHHHHTTTS-HHHHHTSCHHHHH.HHHCCSCCCHHHHHHHH CS
        Xpo1 103 lveavLkclsswvswidiglivnnpllnll.fqlLsdpelreaavecL 149
                 + +a+ + +  +++wi++++i++++l++ll  q+++  e+r  +++cL
  CCD23976.1 209 VRRATSESILCYLQWIPLNYIYETELIELLiSQVVTVAETRPITLKCL 256
                 ****************************9956666***********98 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.073
                 HHHHHHHHHHTTTS-HHHHHTSCHHHHHHHHC.C CS
        Xpo1 105 eavLkclsswvswidiglivnnpllnllfqlL.s 137
                 + +Lk ++ ++s  +  +++ n+++n lf+++ +
  CCD23976.1 742 KGILKLIELYISKSKSPHVIVNKFINPLFETIlN 775
                 568*************************998842 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT CS
        Xpo1  74 dllrsnvqkilelllqileqsqskkqsselveavLkclsswvs 116
                  l++++v  ile++l++  ++ +k+   +  +++ +cl  +++
  CCD23976.1 802 SLIQEKVTLILEFFLECTVEMIDKN--FDDYSEIQHCLYEFIN 842
                 678999999********99999976..6666666666666665 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 2.7
                 THHHHHHHHHCT CS
        Xpo1  26 sffddllsllss 37 
                 +f+++ll  l+ 
  CCD23976.1 987 NFLNSLLVHLKD 998
                 333333333333 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.5   3.1e-17     8e-14       3      73 ..      36      99 ..      34     100 .. 0.95
   2 ?   -2.9   0.0       2.6   6.6e+03      11      33 ..     190     211 ..     181     213 .. 0.79
   3 ?   -2.6   0.0       2.2   5.5e+03      11      28 ..     400     418 ..     395     421 .. 0.72

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 3.1e-17
                HHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHHH CS
       IBN_N  3 kqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnllg 73
                  L  ++k+p ++s++  i+++s+++ +++++++++L n+i+k W+      +lp e+k  Irn+l+ ++ 
  CCD23976.1 36 IILDTFQKEPYSWSFIDKIIQDSKND-QTKFISLSILDNTIQKQWN------TLPIEQKLGIRNFLVGMIR 99
                56899*********************.*******************......***************9985 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.6
                 STCHHHHHHHHHHCTTSHHHHHH CS
       IBN_N  11 qpgflsallqilanseselevRq 33 
                   + +++ ++il+++ s+ +vR 
  CCD23976.1 190 VDQIFQYFISILESTISP-SVRR 211
                 567889999999999999.8885 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.2
                 STCHHHHHHHHHHC.TTSH CS
       IBN_N  11 qpgflsallqilan.sese 28 
                 ++++ls l++i+ +  e++
  CCD23976.1 400 YQNYLSELSSIIIDnMEKP 418
                 6889999999998745555 PP

>> CRM1_repeat_3  CRM1 / Exportin repeat 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.3   3.3e+03      30      40 ..      91     101 ..      91     103 .. 0.86
   2 !   42.3   0.2   2.3e-14   5.9e-11       3      50 ..     480     527 ..     478     528 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.3
  CRM1_repeat_3  30 krfLvtvikdL 40 
                    ++fLv +i++L
     CCD23976.1  91 RNFLVGMIRSL 101
                    68*******99 PP

  == domain 2  score: 42.3 bits;  conditional E-value: 2.3e-14
  CRM1_repeat_3   3 seWswnnlnkLCWAiGSISgamseedEkrfLvtvikdLLnLceekrgk 50 
                    + Ws+++ln+LCWA G+I  +++ edE+++L+t+++ L n+  +k  k
     CCD23976.1 480 EGWSITKLNSLCWALGAIPKCLEYEDERKLLLTFLEGLSNFSMRKADK 527
                    67************************************9998877665 PP

>> CRM1_repeat_2  CRM1 / Exportin repeat 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   1.4   7.3e-14   1.9e-10       3      64 ..     398     460 ..     396     462 .. 0.94

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 7.3e-14
  CRM1_repeat_2   3 qlYkeiLsqlrlvlierMakPeEVl.iveneeGeivretvkdtdtialYktmretLvyLthLd 64 
                    ++Y+++Ls+l +++i++M+kPeEV+ i+ ++e e++   + d ++ ++Y   +e+L y ++Ld
     CCD23976.1 398 SFYQNYLSELSSIIIDNMEKPEEVVsIIDEDEDELITKIIVDGEENEIYLLEKEVLRYTANLD 460
                    68*********************9868888999****************************99 PP

>> CRM1_repeat  Chromosome region maintenance or exportin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   3.3e-07   0.00083       4      34 ..     338     368 ..     335     370 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.3e-07
                  HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH CS
  CRM1_repeat   4 laalqYLvkISeVedrEiFKICLEYWnkLvs 34 
                     +qYL++  ++ + E+F+  LEYW  L+ 
   CCD23976.1 338 EITHQYLLESKNISEPELFRNILEYWKDLAF 368
                  567************************9986 PP

>> PAH  Paired amphipathic helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   2.7e+03       6      30 ..     513     537 ..     512     541 .. 0.80
   2 ?   11.0   0.0   0.00014      0.35       8      41 ..     772     814 ..     769     815 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
         PAH   6 FLdiLhdyqkeqidskeVyeqVskL 30 
                 FL+ L +++  + d+k+ ++ +s++
  CCD23976.1 513 FLEGLSNFSMRKADKKDKIACISNI 537
                 9********9999999866666665 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00014
         PAH   8 diLhdyqkeqidske.........VyeqVskLFhdhpdLlreF 41 
                  iL+dy+ke+   k          ++++V +L++    L+ eF
  CCD23976.1 772 TILNDYKKEDAEMKNpevlncltvIVTKVGSLIQEKVTLILEF 814
                 79*******866666779999999******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1050 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.41
# Mc/sec: 7648.92
//
Query:       CCD23977.1  [L=221]
Description: hypothetical protein NDAI_0C03170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-20   73.6   2.3    3.8e-09   37.1   0.2    2.7  2  Ribosomal_L6  Ribosomal protein L6


Domain annotation for each model (and alignments):
>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.1   6.1e-13   1.1e-08      13      76 .]      54     121 ..      47     121 .. 0.70
   2 !   37.1   0.2   2.1e-13   3.8e-09       1      73 [.     129     206 ..     129     208 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 6.1e-13
                   TEEEEEESSEEEEEE-CTTSEEEEEECST....EEEEEECSESCHHHH.....HHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6  13 qlvlvlGpkgeltreipegvtvevkvegn....kvtvivvsgidkekv.....AligtvrslinnmikGVteg 76 
                   q v++ Gpkg+l++eip+ v++  + + +    ++ +++v+      +     +++gtvrs+inn i+GV eg
    CCD23977.1  54 QYVSIDGPKGSLRLEIPDFVDIVPE-KTEsessSKYFVTVKNP----SdvmqkSMWGTVRSHINNNITGVNEG 121
                   678899****************843.32201112333333222....2335578****************997 PP

  == domain 2  score: 37.1 bits;  conditional E-value: 2.1e-13
                   CSTTEEEEEET....TTEEEEE.ESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHH....HHHHHHHHHHHHHHHHH CS
  Ribosomal_L6   1 iPvgvrvsikg....gqlvlvl.Gpkgeltreipegvtvevkvegnkvtvivvsgidkekv....AligtvrslinnmikGV 73 
                   ++ g+r+si++    g+ v+v+ G +    +++p+g+ ve++    ++t  +++g dk++v    A+i+++ +++++++kG+
    CCD23977.1 129 VGTGYRASIEKtdngGNFVNVKvGASIKQGLDVPDGIRVETP----VPTLLIIEGCDKQQVsqfaAKIRKFHPPEPYKGKGI 206
                   689******99999955555544*******************....9**********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       338  (0.0188521); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1767.86
//
Query:       CCD23978.1  [L=183]
Description: hypothetical protein NDAI_0C03180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-13   51.9   2.0    1.8e-13   51.2   1.9    1.5  1  Ribosomal_S4    Ribosomal protein S4/S9 N-terminal domain
    3.4e-13   49.1   0.0    3.1e-12   46.0   0.0    2.1  2  S4              S4 domain
  ------ inclusion threshold ------
      0.043   12.5   0.1      0.051   12.2   0.1    1.1  1  Herpes_LAMP2    Herpesvirus Latent membrane protein 2
      0.063   13.0   0.2      0.087   12.6   0.2    1.2  1  Baculo_gp41     Structural glycoprotein p40/gp41 conserved re
       0.51   10.3   2.2          1    9.3   0.6    2.3  2  Pox_A_type_inc  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> Ribosomal_S4  Ribosomal protein S4/S9 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   1.9   4.9e-17   1.8e-13       1      80 [.       4      63 ..       4     115 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 4.9e-17
                  TT-S-CHHHHCHCTS-STSSSS-S-SSTTTTS-----CHCH.HHHHHHHHHHHHT-S.HHHHHHHHHHHHHCCSHHHHHHHH CS
  Ribosomal_S4  1 rykgpkckllRrvgfklflkgreyppGqhgkrrkklseYgk.qlrekqklkrrYgll.ekqfrryfkearrirGktgenLlq 80
                  ++k++++kllR+v+f                      ++++ q ++  +++r+Y+++ ++++++y+++++ ir +++++L+ 
    CCD23978.1  4 KLKHHEQKLLRKVDFL---------------------DWKQdQGHRDTQVMRTYHIQnREDYHKYNRICGDIR-RLAHKLSL 63
                  689*************.....................************************************.******86 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.12   4.2e+02       7      21 ..      82      96 ..      78      97 .. 0.87
   2 !   46.0   0.0   8.7e-16   3.1e-12       1      47 [.     109     155 ..     109     156 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.12
                HHHTTSSSSHHHHHH CS
          S4  7 larlglassrreArq 21
                l+++g+ s+++++ +
  CCD23978.1 82 LYNMGILSTKSKISD 96
                89*********9865 PP

  == domain 2  score: 46.0 bits;  conditional E-value: 8.7e-16
                 EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCE CS
          S4   1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDv 47 
                 rRL ++l+rl++a+++  A ++Ie+G+V+V    ++dp+y V+ +++
  CCD23978.1 109 RRLPVILHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNME 155
                 8******************************************9976 PP

>> Herpes_LAMP2  Herpesvirus Latent membrane protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.4e-05     0.051     372     437 ..      39     108 ..      25     132 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
  Herpes_LAMP2 372 rddtlhandgricpdvnhlarrl...pplpsrfvihvrl.lssvtdmalspvrvrnsevltelelqelnr 437
                   ++ + +++  ric d+  la++l   pp  ++  +h +l l +  +m +   +++ s+  +++ +  + r
    CCD23978.1  39 QNREDYHKYNRICGDIRRLAHKLsllPPTDPFRSKHEQLlLEKLYNMGILSTKSKISDLENKVTVSAICR 108
                   3333445555************988888888888887751577889999888888888888888776655 PP

>> Baculo_gp41  Structural glycoprotein p40/gp41 conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   2.4e-05     0.087      90     160 ..     109     177 ..      80     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.4e-05
  Baculo_gp41  90 eylrlLykkaeippniqkaveernqpkirlikdiinavvedllkgtangdyydvvLspklrtavnslkenv 160
                    l +++++ ++++ iq+av+  +q ++r+  ++in      l + + +dy+    + k + ++ ++++ +
   CCD23978.1 109 RRLPVILHRLKMAETIQDAVKFIEQGHVRVGPNLINDP--AYLVTRNMEDYVTWTDNSKIKKTLLRYRNQI 177
                  5567889999**************************84..5677777899*****9*99999999999987 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.6   0.00029         1       7      16 ..      91     100 ..      89     109 .. 0.86
   2 ?   -1.3   0.0      0.63   2.3e+03       5      12 ..     172     179 ..     170     181 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00029
  Pox_A_type_inc   7 RsRIsDLErq 16 
                     +s+IsDLE++
      CCD23978.1  91 KSKISDLENK 100
                     89******97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.63
  Pox_A_type_inc   5 rlRsRIsD 12 
                     r+R+ I D
      CCD23978.1 172 RYRNQIDD 179
                     99**9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1281.17
//
Query:       CCD23979.1  [L=682]
Description: hypothetical protein NDAI_0C03190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-16   57.8   7.2    1.2e-15   56.6   7.2    1.7  1  SKG6         Transmembrane alpha-helix domain
    6.4e-06   26.1   0.0    6.4e-06   26.1   0.0    3.7  3  TMEM154      TMEM154 protein family
    0.00046   20.0   5.0     0.0014   18.5   0.0    3.0  3  DUF4448      Protein of unknown function (DUF4448)
  ------ inclusion threshold ------
      0.019   14.6   0.0      0.065   12.8   0.0    2.0  1  m04gp34like  Immune evasion protein
      0.048   14.5   0.4       0.42   11.5   0.0    2.8  3  EphA2_TM     Ephrin type-A receptor 2 transmembrane domain
        1.2    9.5   0.0        1.2    9.5   0.0    3.5  5  Orf78        Orf78 (ac78)
        9.4    6.0   7.8       0.85    9.5   0.4    2.4  2  RIFIN        Rifin


Domain annotation for each model (and alignments):
>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   7.2   4.6e-19   1.2e-15       1      38 []      56      93 ..      56      93 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 4.6e-19
        SKG6  1 psdssnsntvaIavaVaVPVaViiivLlailifvrRRk 38
                ps++s+s++v+++vaVaVPVaV+ii+L+aili+v++R+
  CCD23979.1 56 PSMNSHSTSVTVGVAVAVPVAVVIIALAAILIVVYKRS 93
                89***********************************7 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.5e-09   6.4e-06      19      94 ..      29     102 ..      15     114 .. 0.77
   2 ?    0.2   0.6      0.26   6.5e+02       3      54 ..     266     315 ..     264     322 .. 0.66
   3 ?   -3.8   3.5       4.3   1.1e+04      52      52 ..     388     388 ..     341     437 .. 0.54

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 2.5e-09
     TMEM154  19 eesadatsaasteseslkqeeakeslssaelsnesdqlelvlmiiiPlvllillllvviiliqkkkrkrsKddeks 94 
                 +  + ++s +s+ s+s k + +k++  ++ ++ +s ++ + + +++P  ++i+ l +++i++ +k++kr+ +++++
  CCD23979.1  29 DSDSSSSSKTSS-SKSTKCTGTKAQCEKPSMNSHSTSVTVGVAVAVPVAVVIIALAAILIVV-YKRSKREAQEDND 102
                 444555666666.78888899**************************999888888888888.8888888887433 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.26
     TMEM154   3 eseksgdtaletatleeesadatsaasteseslkqeeakeslssaelsnesd 54 
                 +  k+++++++t+ l+ ++++   +++t  e+++   + e+  + + +++++
  CCD23979.1 266 KLVKNSTVSIPTDELPLNTTQN-AIQNT-LEPYNDAFEFENNREDDADENNE 315
                 5567888899999998887777.78888.78888655555555555544333 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 4.3
     TMEM154  52 e 52 
                 +
  CCD23979.1 388 Q 388
                 1 PP

>> DUF4448  Protein of unknown function (DUF4448)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.3e-07    0.0014     126     187 ..      39      96 ..       5      98 .. 0.72
   2 ?    1.3   1.3       0.1   2.6e+02      76     154 ..     351     444 ..     299     453 .. 0.64
   3 ?   -1.4   0.0      0.68   1.7e+03      51      88 ..     515     555 ..     513     586 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5.3e-07
     DUF4448 126 eikkGpkVsltkkedlkkledkeseegkkaekyalaialPvvvvvlvlgligfvlwnrkkrd 187
                 + +k  k + tk     + e+++ ++ +++ +  +a+a+Pv+vv+++l+ i++v+++r+kr+
  CCD23979.1  39 SSSKSTKCTGTKA----QCEKPSMNSHSTSVTVGVAVAVPVAVVIIALAAILIVVYKRSKRE 96 
                 3333333333333....44567778888888999************************9996 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.1
     DUF4448  76 k..........ksffssdwlpnsdGfypltvdeewlkgkkservtivlvslqpdnvkd........eveikkGpkVsltkkedlk.kledkeseegkk 154
                 +          +++ + ++lp ++  yp +v e++ ++    ++   ++s+++++++d        + +++  + ++ + + +l  + +++++++ ++
  CCD23979.1 351 AgkmnesdtplETATKNTNLPMEQTTYPTEVVEDVSNQY--GNL--DFQSNHENKNTDtsatlavpTSKTRAASSIYSEAPFQLSaQQHYQPQQSYQQ 444
                 033556666777888899999999999999999998875..445..5555555555444555665544444444444444444434333333333333 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.68
     DUF4448  51 FdekenekVkihlsyvkestkekglk.ksffssdw..lpns 88 
                 F ++++++++++ + ++ ++   + + + f++s++   +n 
  CCD23979.1 515 FRNPSKQQIQLQTARLNGTALNPVDHpEMFYTSTPdaYNNG 555
                 778999999***99999999999888666666654334444 PP

>> m04gp34like  Immune evasion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.5e-05     0.065     221     265 ..      56     100 ..      20     103 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-05
                  XX.XXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  m04gp34like 221 kredvsdnrallvtilsvivvllivvvllvLaylYgpsllrrlss 265
                  + +++ +   ++  +++v+v+++i+++ ++L+++Y++s ++ +++
   CCD23979.1  56 PSMNSHSTSVTVGVAVAVPVAVVIIALAAILIVVYKRSKREAQED 100
                  2222333344455579********************887776665 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00016      0.42       4      37 ..      71     118 ..      66     158 .. 0.53
   2 ?   -4.1   0.0         7   1.8e+04      66      75 ..     177     186 ..     174     187 .. 0.76
   3 ?   -2.1   0.4       2.8   7.3e+03      40      40 ..     446     446 ..     396     490 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
    EphA2_TM   4 aavaglvllvilvilvlvlvrrrsknrkqksdl...............k 37 
                 +av  + +++i+++ +l++v +rsk+++q++++                
  CCD23979.1  71 VAV-PVAVVIIALAAILIVVYKRSKREAQEDNDpdfdgdgeylpnvhpY 118
                 333.333444444445555556666655555444555544443333320 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 7
    EphA2_TM  66 nqAvreFakE 75 
                 ++ +reFak 
  CCD23979.1 177 TNSLREFAKQ 186
                 56799***96 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.8
    EphA2_TM  40 e 40 
                 +
  CCD23979.1 446 Q 446
                 1 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00047       1.2      31      97 ..      30      96 ..      22     105 .. 0.43
   2 ?   -2.4   0.1       2.3   5.8e+03      20      48 ..     224     250 ..     221     287 .. 0.59
   3 ?   -1.7   0.3       1.4   3.6e+03      27      39 ..     303     315 ..     265     341 .. 0.50
   4 ?   -2.1   0.2       1.9   4.8e+03      48      55 ..     393     400 ..     348     437 .. 0.58
   5 ?   -2.0   0.2       1.7   4.5e+03      30      55 ..     615     628 ..     601     646 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00047
       Orf78 31 ndkaenkkekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYfvilrerqkssv 97
                +d+++++k+++s+++k   t+++ ++ + ++  + + +++ + v v v+++++  ++i+  ++++ +
  CCD23979.1 30 SDSSSSSKTSSSKSTKCTGTKAQCEKPSMNSHSTSVTVGVAVAVPVAVVIIALAAILIVVYKRSKRE 96
                3333333333333333333333333344445555555555555555555555544444433333322 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.3
       Orf78  20 KLAlndldnddndkaenkkekksaaeknd 48 
                 K A +d d+  +++++   ++++ + + d
  CCD23979.1 224 KFAATD-DSRFETNNNG-YSNSQRTGTID 250
                 777777.3333333322.22222333333 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.4
       Orf78  27 dnddndkaenkke 39 
                 +n+++d+a++++e
  CCD23979.1 303 ENNREDDADENNE 315
                 2222222222222 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.9
       Orf78  48 ditekesn 55 
                 d++++++n
  CCD23979.1 393 DFQSNHEN 400
                 22222222 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 1.7
       Orf78  30 dndkaenkkekksaaeknditekesn 55 
                 +n++            +n++t++++ 
  CCD23979.1 615 NNSR------------NNSLTSQTNP 628
                 2222............2222222222 PP

>> RIFIN  Rifin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.4   0.00033      0.85     235     308 ..      21      95 ..       2      99 .. 0.50
   2 ?   -0.8   1.8      0.44   1.1e+03     205     274 ..     350     424 ..     267     435 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00033
       RIFIN 235 vekivekaekkaaaaaaeaaaeata.eaekaetaaveattaslqtaiiasivaivvIvLimvIIYLiLRYrRKkK 308
                  + + ++a ++ ++++++++++ t+ + +ka+ ++ +  + s++ ++ +++ + v +v+i +   Li  Y+R k+
  CCD23979.1  21 FQYLYKRADSDSSSSSKTSSSKSTKcTGTKAQCEKPSMNSHSTSVTVGVAVAVPVAVVIIALAAILIVVYKRSKR 95 
                 444444444444444443333332213444455554444455555555555444555555555567788888776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.44
       RIFIN 205 l..klkkskaaltsakekekkeasskekikkkvekive...kaekkaaaaaaeaaaeataeaekaetaaveatta 274
                 +  k+++s++ l++a+++++  +++++  ++ ve++ +   +   + +++++++ ++at ++ +++t+a+++ ++
  CCD23979.1 350 KagKMNESDTPLETATKNTNLPMEQTTYPTEVVEDVSNqygNLDFQSNHENKNTDTSATLAVPTSKTRAASSIYS 424
                 244333333333333333333333333333334444332225555555555566666666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1193  (0.0665402); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 4539.58
//
Query:       CCD23980.1  [L=520]
Description: hypothetical protein NDAI_0C03200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-63  214.9   0.2    2.5e-63  214.3   0.2    1.2  1  Pex24p     Integral peroxisomal membrane peroxin
    0.00063   19.7   0.0       0.27   11.2   0.0    2.3  2  Reticulon  Reticulon
  ------ inclusion threshold ------
      0.034   13.9   4.8       0.14   11.9   0.5    3.0  3  PRT_C      Plant phosphoribosyltransferase C-terminal


Domain annotation for each model (and alignments):
>> Pex24p  Integral peroxisomal membrane peroxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.3   0.2   4.2e-67   2.5e-63       2     366 .]     150     508 ..     149     508 .. 0.90

  Alignments for each domain:
  == domain 1  score: 214.3 bits;  conditional E-value: 4.2e-67
      Pex24p   2 alsspllssnppqlssrLakifplllildkvlkiltWtnpdktlsfllvytficlvpylelvvlplllllfvvmvpaylyrhplrksslik........ 92 
                 ++s+ +l+ n+++l  ++ ++ ++    d+++++ltW+np+ t+++l+++t+ic +p++ ++ lpl+ ++++ ++ ay  rhpl+++++ +        
  CCD23980.1 150 PVSAAVLAGNFKKLGGKMDSLLEFR---DSFIRLLTWRNPSGTITMLILFTLICYNPMYLIL-LPLFEVMYGTIIAAYSFRHPLKRDVYPTrkkygrsl 244
                 68999********************...*******************************999.**************************999******* PP

      Pex24p  93 ..........................keesknestsegptldea......skeivlnLrdlqnkmedllnpidalekflkelagfkdenlstllfltll 159
                                            +e+++ +  +             s ++++nLrdlq++++ l++  d+++ f  e +gf de  st +fl + 
  CCD23980.1 245 lyeifnggpstaipiptsenqhvasiANEDHDAEILHN-----PnedlsgSAKVIVNLRDLQDMTTGLVELNDSITHFNTEVTGFRDEYRSTKVFLKFG 338
                 ********999999888776655555444444444444.....15555599************************************************ PP

      Pex24p 160 ltpililllsrlipwrlillvlg.ailltyHpsvkkvllrllwrlkivrlvvkyltgkelkkakskekkeelikelekketadiildespetrkpkrft 257
                 l+ + + l+s +i+w++++++l+ + l+++Hp+ +k l +                +++ +      ++e  +  l + +++di+lde+pe r     t
  CCD23980.1 339 LLFLTLKLISPYINWSFVISALAwVTLILMHPKLRKILEN---------------SKENPE-----SDVE--EPTLSSEKNYDIVLDEKPEIR-----T 410
                 ************************************9999...............222222.....2222..2345677788***********.....* PP

      Pex24p 258 veifEnqrrwllgkgWtsslfsserydwtdetrkalkespsgvdhledvkpPedWkWdekkkWrlDlepdewvk......eeeekkGWvYddnkwkeps 350
                 ve+fE++++ +++  W +  fs++ +d  d++rka+++ p+gv +l++v pP++W++d++  W++D ++  w+       e+e++  ++Yd        
  CCD23980.1 411 VELFEIYQQGIIPRYWRFLKFSNTVFDTSDPYRKAQQP-PPGVLQLDEVLPPKNWEFDKNYPWEVDHHVASWAAekglemEIEGE--FLYD-------- 498
                 **************************************.**********************************999999999999..****........ PP

      Pex24p 351 tedslsketRRRrwiR 366
                       + ++RRr++R
  CCD23980.1 499 ------SLFKRRRLTR 508
                 ......8888888887 PP

>> Reticulon  Reticulon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   4.6e-05      0.27       3      52 ..     179     225 ..     177     296 .. 0.83
   2 !    6.4   0.0    0.0013       7.9       8      70 ..     325     388 ..     320     408 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.6e-05
   Reticulon   3 dlllWrnkkksgivlgglllllllfellgysllslvsklllllllvlflw 52 
                  ll+Wrn+  ++++l++++l+ +   +l   +l  ++ +++ ++++ +++
  CCD23980.1 179 RLLTWRNPSGTITMLILFTLICYNPMYL---ILLPLFEVMYGTIIAAYSF 225
                 69*******************9999988...5555666666666666555 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0013
   Reticulon   8 rnkkksgivlgglllllllfellgysllslvsklllllllvlflwa.eyagllnks.kppepele 70 
                 r++ +s +v++ + ll+l ++l     +++ + ++ l+ ++l+l+  ++ ++l+ s ++pe+++e
  CCD23980.1 325 RDEYRSTKVFLKFGLLFLTLKLI-SPYINWSFVISALAWVTLILMHpKLRKILENSkENPESDVE 388
                 89999*****9999999999999.78888888888888888888663555555555333444443 PP

>> PRT_C  Plant phosphoribosyltransferase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.44   2.6e+03      21      47 ..      75     101 ..      62     125 .. 0.74
   2 ?   11.9   0.5   2.3e-05      0.14      87     139 ..     179     236 ..     155     240 .. 0.75
   3 ?    2.3   0.0     0.021   1.3e+02      91     137 ..     324     376 ..     319     382 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.44
       PRT_C  21 rkplhmdlklskadsvnpdeLdEEFDs 47 
                 r+ l  +  l+ ad+  +deL +  D 
  CCD23980.1  75 REDLLENNDLTLADTNASDELIDGLDG 101
                 555677788999999999999877774 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2.3e-05
       PRT_C  87 allswrDpratalflllclvvavv.lyvvpf....kvlvlllglyllrhprfRsklPs 139
                  ll+wr+p  t  +l+l  ++++  +y++ +     +  +++++y +rhp  R+  P+
  CCD23980.1 179 RLLTWRNPSGTITMLILFTLICYNpMYLILLplfeVMYGTIIAAYSFRHPLKRDVYPT 236
                 59*******99887776666665425555443343344567789*********99997 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.021
       PRT_C  91 wrDp.ratalflllclvvavvlyvvpf.....kvlvlllglyllrhprfRskl 137
                 +rD+ r t++fl + l+  ++ ++ p       + +l++++ +l hp++R+ l
  CCD23980.1 324 FRDEyRSTKVFLKFGLLFLTLKLISPYinwsfVISALAWVTLILMHPKLRKIL 376
                 5654367777777766665555555443333367788899999*******865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3570.17
//
Query:       CCD23981.1  [L=518]
Description: hypothetical protein NDAI_0C03210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.31   11.8   3.2         15    6.4   2.7    2.9  2  Lectin_C  Lectin C-type domain


Domain annotation for each model (and alignments):
>> Lectin_C  Lectin C-type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   2.7   0.00082        15      55     107 ..     317     373 ..     246     374 .. 0.69
   2 ?    2.6   0.0     0.013   2.3e+02      37      66 ..     428     455 ..     408     469 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00082
                 EEETTSTBCSTTTCTE-B......STSCSTTEEEEEE...GSSTTSEEEEEETTSEEEEEEE CS
    Lectin_C  55 wkwedgskltteqlyknw......psnnsenedCvel...rekssgkwndesCnekkpfvCe 107
                 w+w  +++  t             ++++ ++++C+ l   ++++s +w+ ++C+   + +C+
  CCD23981.1 317 WSWGPNQPIYTR-----IehgtvtKNDTLQAYNCALLkyySTNDSITWEVANCYRNERGLCR 373
                 334333443322.....133445689999********999999999***********99997 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.013
                 CTTSEEEEEEEESSSTTEEEETTSTBCSTT CS
    Lectin_C  37 ksnkkfWigltdeksegewkwedgskltte 66 
                  ++ ++Wi++  +  + +++w++g ++ t 
  CCD23981.1 428 INDIDIWIDI--NSVSVSNCWVNGGPYATC 455
                 456689****..9999********998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3770.35
//
Query:       CCD23982.1  [L=116]
Description: hypothetical protein NDAI_0C03220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-17   61.6   2.9    4.7e-17   61.6   2.9    2.4  3  Spo12     Spo12 family


Domain annotation for each model (and alignments):
>> Spo12  Spo12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1     0.094   1.7e+03      21      30 ..      29      38 ..      28      43 .. 0.69
   2 ?   -1.5   0.3      0.13   2.4e+03      18      21 ..      47      50 ..      33      54 .. 0.53
   3 !   61.6   2.9   2.6e-21   4.7e-17       1      35 []      70     104 ..      70     104 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.094
       Spo12 21 KlfkakskPt 30
                K +ka  kPt
  CCD23982.1 29 KNVKATQKPT 38
                5666668998 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.13
       Spo12 18 hKsK 21
                +K+K
  CCD23982.1 47 FKKK 50
                3444 PP

  == domain 3  score: 61.6 bits;  conditional E-value: 2.6e-21
       Spo12   1 vSPTDnllSPCsqKLnahKsKlfkakskPtkllFa 35 
                 +SPTD+llSPCsqKL +hKsK +  k++Ptkl+Fa
  CCD23982.1  70 ASPTDRLLSPCSQKLADHKSKFLLNKTNPTKLNFA 104
                 8**********************999********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 865.00
//
Query:       CCD23983.1  [L=1034]
Description: hypothetical protein NDAI_0C03230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-38  130.8   3.9    2.4e-38  130.8   3.9    4.7  5  RTT107_BRCT_6  Regulator of Ty1 transposition protein 107 BRC
    1.2e-20   73.3   6.6    6.2e-19   67.7   0.0    5.3  6  RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRC
    4.1e-20   71.5   2.3    1.3e-13   50.7   0.1    3.9  3  PTCB-BRCT      twin BRCT domain
    2.6e-18   66.2  23.5    7.8e-08   32.6   0.3    6.3  6  BRCT           BRCA1 C Terminus (BRCT) domain
    1.9e-11   44.2  14.1    0.00084   19.7   0.2    5.7  5  BRCT_2         BRCT domain, a BRCA1 C-terminus domain
    7.2e-06   26.0   0.4      0.032   14.3   0.0    4.2  3  BRCT_3         BRCA1 C Terminus (BRCT) domain
    0.00028   21.1   0.7       0.26   11.6   0.0    3.9  4  LIG3_BRCT      DNA ligase 3 BRCT domain


Domain annotation for each model (and alignments):
>> RTT107_BRCT_6  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.4      0.34   8.7e+02       1     100 [.      12     111 ..      12     118 .. 0.58
   2 ?   -3.2   2.1       3.7   9.4e+03      42      61 ..     564     583 ..     528     644 .. 0.64
   3 ?   -0.0   0.6      0.37   9.5e+02      45      83 ..     738     776 ..     724     790 .. 0.62
   4 ?   -0.9   0.1      0.72   1.8e+03      10      51 ..     825     866 ..     809     893 .. 0.70
   5 !  130.8   3.9   9.3e-42   2.4e-38       1     107 [.     902    1033 ..     902    1034 .] 0.91

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.34
  RTT107_BRCT_6   1 kvFerakikkiNlvsdipggtevissiLkahGikevkvlsk..klkiedlvknekkkkk..ekkkspeyvliatkasqvkkfkkllkeekenkkvl 92 
                    k+Fe +++  i   +d    t+ +  +L++ G +++ + ++  + ++++l+++++ kk   ++  s+++ +i++++s+  +f k+++    +  v 
     CCD23983.1  12 KLFENLNFLVIATENDDINETTKVVTLLEDNGCNSCLIHDTkdESTTNELTSSKDLKKWyiKTFGSKNIHFIISNTSN-FRFYKIAE---FDFLVP 103
                    789999999999888766666666779999999987665554466667887774444421122223343344444333.34555544...445555 PP

  RTT107_BRCT_6  93 vveWdWcv 100
                    +v   W+ 
     CCD23983.1 104 IVTPKWVT 111
                    55555555 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3.7
  RTT107_BRCT_6  42 klkiedlvknekkkkkekkk 61 
                    ++ +e++ kn++ ++k++++
     CCD23983.1 564 NYLKEEIRKNNDDEDKSSTQ 583
                    45556666664433333332 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.37
  RTT107_BRCT_6  45 iedlvknekkkkkekkkspeyvliatkasqvkkfkk.llk 83 
                     +++ kn +kkk+  +  p  + i ++++q +k+ k +++
     CCD23983.1 738 LNEFEKN-SKKKRIGNLLPAEIAILEEKKQNEKLAKeIVS 776
                    3666667.55555555667888888888888888773443 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.72
  RTT107_BRCT_6  10 kiNlvsdipggtevissiLkahGikevkvlskklkiedlvkn 51 
                    +iN    i  +    ++ Lk+++ + +k +  ++ i+d++kn
     CCD23983.1 825 DINFNTVIAPKKMRTAKFLKSFSFHPLKNILLSTFIDDILKN 866
                    455555555555556677777777777777777777777777 PP

  == domain 5  score: 130.8 bits;  conditional E-value: 9.3e-42
  RTT107_BRCT_6    1 kvFerakikkiNlvsdipggtevissiLkahGikevkvlsk.klkiedlvkn...........ekkkkkekkks...........peyvliatk 71  
                     k+Fera+i +iNl++d+ ggte+issiLk+hGik+++v+++ k+ i+d+v+n           + kk+k++kk+           p+yv++atk
     CCD23983.1  902 KLFERAGIVTINLMNDLIGGTEIISSILKCHGIKHTNVINHkKFGISDIVENkydntndegnnTGKKRKTTKKRirlndgkfidcPNYVIVATK 995 
                     89**************************************99**********999888777654444444444499****************** PP

  RTT107_BRCT_6   72 asqvkkfkkllkee..kenkkvlvveWdWcvksifnle 107 
                     + q+kk+kk+++++   +nk+vl+v+WdWcv++ifnl+
     CCD23983.1  996 PLQAKKLKKIMNADeeLSNKNVLIVDWDWCVNMIFNLR 1033
                     ************987789******************97 PP

>> RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.093   2.4e+02      77      92 ..     104     119 ..      95     134 .. 0.82
   2 ?   -0.1   0.0      0.34   8.8e+02      35      58 ..     153     177 ..     126     181 .. 0.75
   3 ?    1.1   0.0      0.14   3.6e+02      78      99 ..     201     222 ..     193     223 .. 0.87
   4 ?   -0.5   0.0      0.44   1.1e+03      32      89 ..     373     433 ..     351     448 .. 0.68
   5 ?   -3.4   0.0       3.5   9.1e+03      30      44 ..     630     648 ..     606     661 .. 0.51
   6 !   67.7   0.0   2.4e-22   6.2e-19      10      93 ..     784     870 ..     776     884 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.093
                    EE-CHHHHHHHHHTS- CS
  RTT107_BRCT_5  77 ilspdfiedvLkkkkl 92 
                    i++p+++++++++++ 
     CCD23983.1 104 IVTPKWVTACISTRRH 119
                    9**********96554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.34
                    HHHHHHHTTEEE-SGCCT.-SEEE- CS
  RTT107_BRCT_5  35 dkkkLrklGikivqeakk.cntliA 58 
                      + +++lG +i++  ++ +++liA
     CCD23983.1 153 YSELINSLGGTITHVINNkTTHLIA 177
                    5677899*******66655*****9 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.14
                    E-CHHHHHHHHHTS---SGGGB CS
  RTT107_BRCT_5  78 lspdfiedvLkkkklldleeyl 99 
                    + p+++ +++k++k +d++++l
     CCD23983.1 201 VYPTWLVQCFKERKYIDESPHL 222
                    6799************999886 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.44
                    SHHHHHHHHHT..TEEE-SGCCT-SEEE-SS---SHHHHHHCCCTT..EEE-CHHHHHHHHH CS
  RTT107_BRCT_5  32 edsdkkkLrkl..GikivqeakkcntliApkilRTeKFLksLskap..kilspdfiedvLkk 89 
                    ++s ++ L ++  Gi+ ++  k+ ++l++ ++   +KF ++   ++  ++++  ++e   k+
     CCD23983.1 373 QRSYIQRLTEMlgGISTTELSKRNTHLVS-RMPVGKKFFQAKKWKDrcQVINHLWLERTYKT 433
                    56666666665446777777777777775.66668999999999998999999999988774 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 3.5
                    .....SSHHHHHHHHHTTE CS
  RTT107_BRCT_5  30 n....kedsdkkkLrklGi 44 
                    n    ke+++++ L++  i
     CCD23983.1 630 NvhaaKEAENTRTLKSNEI 648
                    1223344444444444444 PP

  == domain 6  score: 67.7 bits;  conditional E-value: 2.4e-22
                    SSSXXX--EEEEESSS.TT..SSHHHHHHHHHTTEEE-S...GCCT-SEEE-SS---SHHHHHHCCCTT..EEE-CHHHHHHHHHTS-- CS
  RTT107_BRCT_5  10 kkskpevkiravlTgceeevnkedsdkkkLrklGikivq...eakkcntliApkilRTeKFLksLskap..kilspdfiedvLkkkkll 93 
                    +++  +++i+a+ Tgc+e+  +   d+++L++ Gi+++    +  + nt+iApk++RT+KFLks+s++p  +il ++fi+d+Lk+ ++ 
     CCD23983.1 784 RENVLQFSINAISTGCHED--IGILDLEILNQFGIRLYPeitSDINFNTVIAPKKMRTAKFLKSFSFHPlkNILLSTFIDDILKNIHIG 870
                    6677899************..67799************9554444599************************************87664 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.064   1.6e+02      27      63 .]      71     109 ..      70     109 .. 0.76
   2 !   15.8   0.1     4e-06      0.01       3      40 ..     138     177 ..     136     181 .. 0.86
   3 !   50.7   0.1   5.1e-17   1.3e-13       2      63 .]     363     426 ..     362     426 .. 0.97

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.064
                 EESSE.ETT-SEEEECSS-CHHHHHHH.HCT-EEE-CHH CS
   PTCB-BRCT  27 yskdl.tksvTHLicksgeGekyekAk.kwgipvVsveW 63 
                 y k++ +k++ + i+++++ + y+ A   + +p+V+++W
  CCD23983.1  71 YIKTFgSKNIHFIISNTSNFRFYKIAEfDFLVPIVTPKW 109
                 6788856666666778888888999973455******** PP

  == domain 2  score: 15.8 bits;  conditional E-value: 4e-06
                 EEEECB-TTCHHHH..HHHHHHTT-EEESSEETT-SEEEE CS
   PTCB-BRCT   3 icvtgysgddrksl..qklieamGaeyskdltksvTHLic 40 
                 ic++ ys + ++++   +li+++G++++   ++++THLi+
  CCD23983.1 138 ICISTYSMKFSEYIfySELINSLGGTITHVINNKTTHLIA 177
                 788888888877775579*********************7 PP

  == domain 3  score: 50.7 bits;  conditional E-value: 5.1e-17
                 EEEEECB-TTCHHHHHHHHHHTT-EEESSEETT-SEEEECSS-CHHHHHHHHCT..-EEE-CHH CS
   PTCB-BRCT   2 vicvtgysgddrkslqklieamGaeyskdltksvTHLicksgeGekyekAkkwg..ipvVsveW 63 
                 ++++t+y g +r+++q+l+e +G+  +++l+k++THL+++ + G+k+  Akkw+  ++v++++W
  CCD23983.1 363 ILTYTNYFGRQRSYIQRLTEMLGGISTTELSKRNTHLVSRMPVGKKFFQAKKWKdrCQVINHLW 426
                 7899*************************************************999******** PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.9   7.9e-07     0.002       3      79 .]      11     114 ..      10     114 .. 0.92
   2 !   32.6   0.3     3e-11   7.8e-08       3      79 .]     130     210 ..     128     210 .. 0.85
   3 ?    1.0   0.1      0.23   5.8e+02       5      40 ..     254     291 ..     251     309 .. 0.72
   4 !   24.6   0.1   9.4e-09   2.4e-05       5      68 ..     356     418 ..     350     426 .. 0.85
   5 ?   -2.4   0.1       2.5   6.4e+03      53      68 ..     580     595 ..     564     595 .. 0.84
   6 ?    0.8   0.1      0.26   6.6e+02      18      61 ..     965    1004 ..     960    1028 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 7.9e-07
                 TTTTTTEEEEE..EESTSSHHHHHHHHHHHHTTCEE.........................ESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHH CS
        BRCT   3 ellfhgckfvi..tgvldnftrdeleelikehGGkv.........................ttevskktthlvvgepesrslkylealklnipivheew 74 
                 ++lf++++f +  t + d  ++++  +l++++G+                            + + +k+ h++++++      + +  ++ +piv+++w
  CCD23983.1  11 SKLFENLNFLViaTENDDINETTKVVTLLEDNGCNSclihdtkdesttneltsskdlkkwyIKTFGSKNIHFIISNTSNFRFYKIAEFDFLVPIVTPKW 109
                 79*********99888888888899************************************88898999999988886777889*************** PP

                 HHHHH CS
        BRCT  75 lldci 79 
                 + +ci
  CCD23983.1 110 VTACI 114
                 ****8 PP

  == domain 2  score: 32.6 bits;  conditional E-value: 3e-11
                 TTTTTTEEEEEEESTSSHHHHHH..HHHHHHTTCEEESSCSTTSSEEE...ESSSHSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   3 ellfhgckfvitgvldnftrdel..eelikehGGkvttevskktthlv...vgepesrslkylealklnipivheewlldci 79 
                   +f++++++i +++++   +++   eli+++GG++t+ +++ktthl+   +++p     k + +++  i+ v + wl++c+
  CCD23983.1 130 NHFFRNFQICI-STYSMKFSEYIfySELINSLGGTITHVINNKTTHLIaiaIDDPAIIAIKEKGQNNTIIKSVYPTWLVQCF 210
                 679********.8888888888888***********************776666644445668899999************6 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.23
                 TTTTEEEEEEESTSSHHHHHH...HHHHHHTTCEEESSC CS
        BRCT   5 lfhgckfvitgvldnftrdel...eelikehGGkvttev 40 
                 +++++ f +     +++++ +    +lik++GG+++ ++
  CCD23983.1 254 FLKNKRFIL-AMNLSMNKNTYsffLQLIKNCGGSIVRYI 291
                 667777777.55555555555556789*******96655 PP

  == domain 4  score: 24.6 bits;  conditional E-value: 9.4e-09
                 TTTTEEEEE.EESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSE CS
        BRCT   5 lfhgckfvi.tgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnip 68 
                 +f+     + ++++ + +r+++++l +++GG  tte+sk++thlv   p   ++k+++a+k++ +
  CCD23983.1 356 IFKSSELILtYTNYFGRQRSYIQRLTEMLGGISTTELSKRNTHLVSRMP--VGKKFFQAKKWKDR 418
                 555555555667777889***************************9999..**********9866 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 2.5
                 HSHHHHHHHHHHTTSE CS
        BRCT  53 esrslkylealklnip 68 
                  s+++ky++al  ni+
  CCD23983.1 580 SSTQHKYEKALFDNIK 595
                 47899******99996 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.26
                  SSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHH CS
        BRCT   18 dnftrdeleelikehGGkvttevskktthlvvgepesrslkyle 61  
                  ++ +r+  ++ i+++ Gk+     +  ++++v +  +  +k+++
  CCD23983.1  965 TGKKRKTTKKRIRLNDGKF----IDCPNYVIVATKPLQAKKLKK 1004
                  5667888899999999998....888899997777344444333 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.5   9.8e-07    0.0025       1      78 [.      10     119 ..      10     126 .. 0.81
   2 !   19.7   0.2   3.3e-07   0.00084      23      84 ..     152     221 ..     128     222 .. 0.85
   3 ?    4.6   0.1     0.017        45      19      42 ..     271     294 ..     251     315 .. 0.73
   4 ?    1.1   0.0      0.21   5.5e+02      19      72 ..     372     430 ..     353     441 .. 0.75
   5 !    5.6   0.1     0.008        20      17      68 ..     965    1024 ..     957    1027 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 9.8e-07
      BRCT_2   1 ksklFeglrFYin.daeps.psreklkklIeknGGevveti.........................tsavyiviaesneee.....laekrkrrvvspk 67 
                 ksklFe+l+F +  +++++ ++  k+ +l e+nG + +  +                          s+++++i++++++      ++ +   ++v+pk
  CCD23983.1  10 KSKLFENLNFLVIaTENDDiNETTKVVTLLEDNGCNSCLIHdtkdesttneltsskdlkkwyiktfGSKNIHFIISNTSNFrfykiAEFDFLVPIVTPK 108
                 589*********98666777***************98544444566777888888888999988886666777777766668**9999999******** PP

      BRCT_2  68 yIkdCikkgkl 78 
                 ++++Ci+  + 
  CCD23983.1 109 WVTACISTRRH 119
                 ******98765 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 3.3e-07
      BRCT_2  23 klkklIeknGGevvetitsavyiviaesneee........laekrkrrvvspkyIkdCikkgkllpleny 84 
                  + +lI + GG+++++i+++++++ia   ++          + ++  ++v p+++  C k+ k ++ +++
  CCD23983.1 152 FYSELINSLGGTITHVINNKTTHLIAIAIDDPaiiaikekGQNNTIIKSVYPTWLVQCFKERKYIDESPH 221
                 5789**********************999999******999999999****************9998775 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.017
      BRCT_2  19 psreklkklIeknGGevvetitsa 42 
                 ++ + + +lI+++GG +v+ i+++
  CCD23983.1 271 NTYSFFLQLIKNCGGSIVRYIEES 294
                 56666789*********9998655 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.21
      BRCT_2  19 psreklkklIeknGGevvetitsavyiviaesneee.....laekrkrrvvspkyIkdC 72 
                  +r+ +++l e  GG  + + +++++++++     +     ++ k++ +v+++ +++  
  CCD23983.1 372 RQRSYIQRLTEMLGGISTTELSKRNTHLVSRMPVGKkffqaKKWKDRCQVINHLWLERT 430
                 679999***************99999999987766677766666666677777777665 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.008
      BRCT_2   17 pspsreklkklIeknGGevvetitsavyiviaesneee...........laekrkrrvvspky 68  
                   +++r++ kk I+ n+G++ + ++  ++iv ++  +             + ++++  +v++++
  CCD23983.1  965 TGKKRKTTKKRIRLNDGKFIDCPN--YVIVATKPLQ-AkklkkimnadeELSNKNVLIVDWDW 1024
                  4589***************99995..3444444443.34888888887777777777888877 PP

>> BRCT_3  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.021        53      65      86 ..      97     118 ..      12     124 .. 0.62
   2 !   14.3   0.0   1.2e-05     0.032       2      87 ..     132     215 ..     131     222 .. 0.87
   3 ?    2.6   0.0     0.053   1.4e+02      12      42 ..     267     297 ..     253     330 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.021
      BRCT_3  65 aeqlkipvvSteWviQsLIege 86 
                      +p+v+ +Wv  ++ + +
  CCD23983.1  97 EFDFLVPIVTPKWVTACISTRR 118
                 445679***********96665 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.2e-05
      BRCT_3   2 ilkdlkillvseqkefee..lWseilklaGaavvkkekseaeeislgkldvvvtdsscpeevlkkaeqlkipvvSteWviQsLIegev 87 
                 ++++++i + + +++f+e  ++se+++  G+++ + +++++ +     +++ + d+ + +  +k  ++  i+ v  +W++Q+  e + 
  CCD23983.1 132 FFRNFQICISTYSMKFSEyiFYSELINSLGGTITHVINNKTTH----LIAIAIDDPAIIAIKEKGQNNTIIKSVYPTWLVQCFKERKY 215
                 799***********99986689***********9999998876....589999999999999999999999***********876665 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.053
      BRCT_3  12 seqkefeelWseilklaGaavvkkekseaee 42 
                 s +k+  +++ +++k++G+++v+ +++   e
  CCD23983.1 267 SMNKNTYSFFLQLIKNCGGSIVRYIEESDIE 297
                 34558899*************9988876655 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.012        31      63      80 ..     101     118 ..      74     119 .. 0.80
   2 !   11.6   0.0    0.0001      0.26      40      80 ..     161     214 ..     133     215 .. 0.85
   3 ?   -1.3   0.0       1.1   2.8e+03      38      75 ..     391     430 ..     383     434 .. 0.75
   4 ?   -3.7   0.0       5.9   1.5e+04      55      79 ..     549     573 ..     537     574 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.012
   LIG3_BRCT  63 nakaVtaewiwesIkkrt 80 
                  +  Vt++w+ ++I +r+
  CCD23983.1 101 LVPIVTPKWVTACISTRR 118
                 5778**********9986 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.0001
   LIG3_BRCT  40 ekeaTHvvvskke.............eskkekeksknakaVtaewiwesIkkrt 80 
                   ++THv+++k +              +k++ ++++  k+V + w+ ++ k+r+
  CCD23983.1 161 GGTITHVINNKTThliaiaiddpaiiAIKEKGQNNTIIKSVYPTWLVQCFKERK 214
                 567999999977799999999***97677777888889************9985 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.1
   LIG3_BRCT  38 ekekeaTHvvvskke..eskkekeksknakaVtaewiwes 75 
                 e +k  TH v++ ++  +  + k+++ + +++   w+  +
  CCD23983.1 391 ELSKRNTHLVSRMPVgkKFFQAKKWKDRCQVINHLWLERT 430
                 556778****998877677788888888888888888765 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 5.9
   LIG3_BRCT  55 kkekeksknakaVtaewiwesIkkr 79 
                 k+  +k k+    +a++++e I+k+
  CCD23983.1 549 KELSNKGKRSIETSANYLKEEIRKN 573
                 4444555555567899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1568  (0.0874561); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 7364.00
//
Query:       CCD23984.1  [L=87]
Description: hypothetical protein NDAI_0C03240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.034   13.1   0.0      0.038   13.0   0.0    1.0  1  Nramp          Natural resistance-associated macrophage prote
      0.046   13.9   0.0      0.057   13.6   0.0    1.2  1  Inhibitor_I53  Thrombin inhibitor Madanin


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.2e-06     0.038     157     210 ..      18      70 ..       3      74 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.2e-06
       Nramp 157 keslllavgilGatvmphnlflhsslvqerkitidrseke..ealkyeriDtiial 210
                 +++ +l++g + a + p+ +++++   +++k+++  + ++   + k er D+++++
  CCD23984.1  18 PQFKYLMLGSVCAAILPTSIYMQQRNSAKEKQKA--Q-EQllMEKKPERRDSLASM 70 
                 57889*********************99999555..3.333667889999999887 PP

>> Inhibitor_I53  Thrombin inhibitor Madanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.4e-06     0.057       4      59 ..      20      82 ..      17      86 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.4e-06
                   XXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX------SS-- CS
  Inhibitor_I53  4 faililavvasavv...mayPerdsakdGnqekerallvkvqersdv....dadydeydedgt 59
                   f  l+l  v +a++   +   +r+sak+  + +e+ l+ k  er d+    d   d++d  gt
     CCD23984.1 20 FKYLMLGSVCAAILptsIYMQQRNSAKEKQKAQEQLLMEKKPERRDSlasmDPLLDDFDSFGT 82
                   66788888888876332334689*********************9973323444567776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.35
# Mc/sec: 734.28
//
Query:       CCD23985.1  [L=208]
Description: hypothetical protein NDAI_0C03250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.4    7.1   8.7        8.3    5.8   8.7    1.7  1  Z1        Z1 domain


Domain annotation for each model (and alignments):
>> Z1  Z1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   8.7   0.00046       8.3      37     123 ..      51     146 ..      39     188 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00046
          Z1  37 deqekvaelieelleelkkelkesaeekkeellkeleklwekekts.......tkseeeelsfeevkeelkealekievvvvNsskkk....erldYe 123
                 ++ + +++  ++++ee+kke++ +  +k++   k+ +++w++++++       + ++++ l+fe+  e+++  + +i + ++N ++++    ++++++
  CCD23985.1  51 KDSKVIEHITNDQFEEFKKEIEGK--NKEKIDKKRKQEVWDRHQSTeykkpclAPNDIQYLQFEKASENIEVFCGNILLSSDNLEEQEqsllNEMTFQ 146
                 444555666677888888888887..556666678889999994446789999778999999************999999999988875555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2020  (0.112667); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1547.01
//
Query:       CCD23986.1  [L=491]
Description: hypothetical protein NDAI_0C03260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-49  168.4  47.2    7.6e-44  150.4  47.2    4.2  1  TDA11           Topoisomerase I damage affected protein 11
  ------ inclusion threshold ------
       0.23   11.9   7.0       0.89   10.1   7.0    2.0  1  SVIP            Small VCP/p97-interacting protein
        2.1    8.7   9.9       0.27   11.6   2.5    2.9  2  Ly49            Ly49-like protein, N-terminal region


Domain annotation for each model (and alignments):
>> TDA11  Topoisomerase I damage affected protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4  47.2   1.3e-47   7.6e-44      17     429 ..       3     410 ..       1     490 [. 0.75

  Alignments for each domain:
  == domain 1  score: 150.4 bits;  conditional E-value: 1.3e-47
       TDA11  17 tkfdvfiesnekdlevdtstrasivs.nsPvrdtkrkirsasvsglrlesrrsssassvgstagktnlsqrlltPvrln.eqehPlkdkPd........ 105
                   fd f+e+ +k ++vdtstr+s    n  v++  ++++s   s     s+r               +s    tP+r + e++hPlk+  d        
  CCD23986.1   3 NSFDEFVEETDKAIHVDTSTRNSYRNtNDNVNNLLEEVKSYDDSNSDKRSKRHQP-----------TVSLLQTTPTREEcEEDHPLKNFNDiydvaeet 90 
                 579*******************974313444444444444333333333333333...........33333469**9754999****9999999***** PP

       TDA11 106 ...............................vtrssvksksnakskrrsliqPivv.PisPesqnnlf.....sseqavaselrklrngqrv.isstsv 166
                                                ++r ++  +s  + krrsliqP+v+ P +Pe+  +        + ++ +s + kl+n+  + is++ +
  CCD23986.1  91 aefndfhrslrtpdvyihteknptstksinvISRPNSNPRSSMMPKRRSLIQPMVIsPSTPEDSLDVDiyqftKAVKSSSSSTTKLQNHVPLgISTENL 189
                 ***********************9977766666777777777899*********855999*98766544555555566678999*****75459***** PP

       TDA11 167 nsriassisim.ndvsqdnsldvsallqslaskelelletkqkiedlkkqlaseenaytrralelkelkeqvskyldPslftsvknrasiqvadgqiyl 264
                 +sr  s++ i  n++s++n  d+++ll  la ke elle+kqkiedl+kql+ +e+ y++ ++elk+lkeqvs+++     +  +        +  +yl
  CCD23986.1 190 HSRTNSTQLITaNELSKQN--DIASLLTNLANKEQELLESKQKIEDLQKQLQLNEKLYKQHSIELKSLKEQVSRHFLSVKLGDPNS-----TGQ-GEYL 280
                 *******998537888887..89***************************************************976555554443.....334.2455 PP

       TDA11 265 idrtenelisslsraesktklnipkssnsisstnskisvralsnlsPkdieeredeakeslWskslalftrldkiiqqevekslnWedsgePevsefap 363
                  d      +ss +r   +t           + tn + ++    nl     + + ++   s+W k+lalf+++d+iiqqe+ekslnW+d +e  ++    
  CCD23986.1 281 DD------NSSTPRRSGNTT------MIEARNTNTSPQS----NLKTT-ADTNVNSQSTSMWNKPLALFNQFDQIIQQELEKSLNWDDDAEEIARSNG- 361
                 44......455566555555......2222333333333....44322.2334456678*****************************8765544433. PP

       TDA11 364 iteePtqyydqnssssvressaqqydneaseardksyssrslWsfvsevkaGllGkpdeelkdsdv 429
                      t         s     ++   n  +e++ +   + slWsfv +vk+G+lG+ + e++ds  
  CCD23986.1 362 ----RT---------SMD---NKSPPNSKPETNTNRSVTSSLWSFVNDVKTGILGV-EIENEDSMS 410
                 ....22.........222...2234566789999988899****************.444444443 PP

>> SVIP  Small VCP/p97-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   7.0   0.00015      0.89      17      63 ..     406     452 ..     400     457 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00015
        SVIP  17 etpdaeerRrqqaEAAekRqeeqesRGiknpesvkrkqkraeeaekr 63 
                 e+  +e+ Rr+ a    k  +e++  Gik+ + +k++q+++++++ +
  CCD23986.1 406 EDSMSETLRRRNAQKGRKKVREKKPDGIKEFNTIKKQQQQQQQQQNS 452
                 555679999999***************************99998765 PP

>> Ly49  Ly49-like protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.5   4.5e-05      0.27      37      79 ..     219     261 ..     211     269 .. 0.89
   2 ?   -0.3   0.9      0.22   1.3e+03      30      50 ..     436     456 ..     415     483 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.5e-05
                 XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..HHHHHH CS
        Ly49  37 heleetlnlsqnysimqndinlkeelLrnkslecsilkdlles 79 
                 ++++e l+ +q+ + +q++ +l+e+l ++ s+e ++lk++++ 
  CCD23986.1 219 NKEQELLESKQKIEDLQKQLQLNEKLYKQHSIELKSLKEQVSR 261
                 4678999*******************************98765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.22
                 XXXXXXXXX.XXXXXXXXXXX CS
        Ly49  30 fqysqekheleetlnlsqnys 50 
                 f ++++++++++ ++ s++ +
  CCD23986.1 436 FNTIKKQQQQQQQQQNSNRLK 456
                 444444444444443344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2777  (0.154889); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 3587.85
//
Query:       CCD23987.1  [L=293]
Description: hypothetical protein NDAI_0C03270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.011   15.5   1.2      0.019   14.7   1.2    1.3  1  TGFb_propeptide  TGF-beta propeptide
      0.029   14.5   0.3       0.19   11.9   0.1    2.3  2  SRI              SRI (Set2 Rpb1 interacting) domain
      0.032   13.9   0.2      0.051   13.3   0.2    1.4  1  Folliculin_C     Folliculin C-terminal domain
      0.054   12.6   0.2      0.082   12.0   0.2    1.3  1  SepQ             SepQ protein
      0.083   11.5   0.0       0.12   11.0   0.0    1.1  1  DUF3138          Protein of unknown function (DUF3138)


Domain annotation for each model (and alignments):
>> TGFb_propeptide  TGF-beta propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   1.2   5.4e-06     0.019      46     112 ..     181     246 ..     164     263 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.4e-06
  TGFb_propeptide  46 lkksaPqflldlYnslseeeeeeeaeees.ekaseplasaqderaldeadtvmsfvnevekl.eveksr 112
                      ++++aP+fl + +n ++eee++e+ +++      ++++s + e++ + a+ +  fv+++e++   +k+r
       CCD23987.1 181 NENEAPEFLNEQFNIIEEEEQKEDSMNTGfP---NKNISTEQEEFKNIAKDIYDFVENKENKnVSDKIR 246
                      7799*************99998887766543...57899999****************77753334433 PP

>> SRI  SRI (Set2 Rpb1 interacting) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.36   1.3e+03      40      80 ..      11      51 ..       5      55 .. 0.56
   2 ?   11.9   0.1   5.3e-05      0.19      28      54 ..     218     244 ..     201     259 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.36
         SRI 40 tkklvekElkkdksrdppkelseekkkkikefvkeYmekfg 80
                + k ++k+  + +++ +p ++s + ++k+ +f  +  +k++
  CCD23987.1 11 VSKFISKHDNNLQNSVSPLSPSYTGRSKVPKFNDNVADKKL 51
                44444444333334433333677777888777776666655 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 5.3e-05
         SRI  28 kkedfKklakeltkklvekElkkdksr 54 
                 ++e+fK++ak++  ++ +kE k+ +++
  CCD23987.1 218 EQEEFKNIAKDIYDFVENKENKNVSDK 244
                 49********************98864 PP

>> Folliculin_C  Folliculin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   1.4e-05     0.051     118     208 ..     165     263 ..     112     268 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.4e-05
  Folliculin_C 118 ellsklefkllspiksldsektPsilnkaeqallned.....lsievvsivLstlkeeWinkakllyklkrv.ds...rekedtkrllqvlgaieee 205
                    +ls++e + + + +  + +++P+ ln+  + + +e+     +++   ++ +st +ee+ n ak +y + +  ++   ++k+   + ++++ ++++ 
    CCD23987.1 165 YSLSTYEVQKYRSYNENE-NEAPEFLNEQFNIIEEEEqkedsMNTGFPNKNISTEQEEFKNIAKDIYDFVENkENknvSDKIRGSKFMSMISLVNDG 260
                   456666666666655554.4599999999999988887777788899999*******************9885553445555555666666655777 PP

  Folliculin_C 206 dve 208
                   dv+
    CCD23987.1 261 DVT 263
                   766 PP

>> SepQ  SepQ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   2.3e-05     0.082      98     137 ..     206     245 ..     195     277 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
        SepQ  98 iqaalpeddvsvddvqfttlnkdvypviennngknrlnvi 137
                 +++ +p++++s ++ +f  + kd+y  +en++ kn  + i
  CCD23987.1 206 MNTGFPNKNISTEQEEFKNIAKDIYDFVENKENKNVSDKI 245
                 8999***************************999976654 PP

>> DUF3138  Protein of unknown function (DUF3138)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.2e-05      0.12     185     226 ..     136     174 ..     119     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.2e-05
     DUF3138 185 dnarGgiGnnivntavvnvplsatrtleaGlvpslgGyevqq 226
                  n +G+iGnni+      +pl++t  ++     sl+ yevq+
  CCD23987.1 136 PNLQGNIGNNIIRLNHGSFPLNHTFPFKN---YSLSTYEVQK 174
                 5789**********************996...69999***97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2279.34
//
Query:       CCD23988.1  [L=719]
Description: hypothetical protein NDAI_0C03280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-62  210.0   1.9    3.4e-62  210.0   1.9    1.9  2  ANTH      ANTH domain
    0.00018   21.5   0.5     0.0007   19.6   0.1    2.3  2  ENTH      ENTH domain


Domain annotation for each model (and alignments):
>> ANTH  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.0   1.9   3.8e-66   3.4e-62       2     275 ..       4     261 ..       3     263 .. 0.96
   2 ?   -1.7   0.2      0.12   1.1e+03     142     174 ..     291     324 ..     267     328 .. 0.68

  Alignments for each domain:
  == domain 1  score: 210.0 bits;  conditional E-value: 3.8e-66
                 HHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS.SHHHHHHHHHHHHHHHHHS-CHHHHHHHHTT-----TT---TSHHHSTHH CS
        ANTH   2 levavvKAtshdevPpkekhvreilvltssrekvaalvwalsrrlkltrnwvvalKaLilvHklLreGhpsveqellsarrrisellnlssfddsssks 100
                 + + v++At+++ +Ppk k+++ il++  +++++ ++++al  r++++ +w++a+K+ i+vH l+reG+++v+ ++ls+  ++  l+   s     ++s
  CCD23988.1   4 YMKLVKGATKIKLAPPKLKYIEPILLGSADPNDFREIIRALEARISDS-AWTIAYKSVIMVHLLIREGDKNVTLDYLSNDLDFFTLSSSIS-----NNS 96 
                 7899********************************************.*******************************99998887555.....355 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHSS-...CCCS--S.....TTSHCC.C--HHHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHH CS
        ANTH 101 wdysafiraYakyLderlefhrklkvdkgelereeegslvavedpnerktlsmeklldkieklqklldrllkckptgnalsnevilaalvllvkeslkl 199
                  + ++   +Ya+yL+ r++ + k+++d   + re +++l+ ++dp+ r   +++k l+++e+l+ ++ +llk k+++ +l+ne++l++++llv+++l+l
  CCD23988.1  97 TAETRYLTRYANYLKIRCQEFGKTNKD---YVREGYSNLKLSTDPSPR---DLQKALQHVESLEVQISSLLKLKYSQMDLNNELLLFSFKLLVQDLLAL 189
                 556666666******************...****************88...************************************************ PP

                 HHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--GGG.S--GGGS-CHHCCCCCHHH CS
        ANTH 200 YkaineglinLlekffelskheadkaldiykrfskqfeelkeFyevckslgilrsleiPelekippnllealeefl 275
                 Y+a+neg+i+Lle ffels+ +a+k+ld+yk+f++++e+++++++ +ks+g++    iP +++i+++l+++lee+l
  CCD23988.1 190 YNALNEGIITLLETFFELSHRNAEKTLDLYKTFVNLTEHVVKYLKSGKSIGMK----IPVIKHITTKLIRSLEEHL 261
                 *****************************************************....*****************97 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.12
                 .TTSHCC..C--HHHHHHHHHHHHHHHHHHHTT- CS
        ANTH 142 vedpner.ktlsmeklldkieklqklldrllkck 174
                 +++ n++  ++s +  ld+i++ +++l++ l+++
  CCD23988.1 291 NNNNNSKaSESSAQVRLDQIREQKRILQEQLNNQ 324
                 2223333678888999999999999999988865 PP

>> ENTH  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   7.8e-08    0.0007       3      91 ..       3      88 ..       1     109 [. 0.84
   2 ?   -3.0   0.1      0.78     7e+03      95     120 ..     231     258 ..     209     260 .. 0.60

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 7.8e-08
                HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSHHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGG CS
        ENTH  3 eteskvreatnndpwGpsnkllteiarltyskkelseiisvitkrLqnnkgkewrsvlKaLtlieYLlknGseqvidwlkenisiiktl 91
                 + + v+ at+ +   p+ k ++ i   + + +++ eii  ++ r+   +++ w   +K+ ++++ L+++G+++v  +  +n   + tl
  CCD23988.1  3 TYMKLVKGATKIKLAPPKLKYIEPILLGSADPNDFREIIRALEARI---SDSAWTIAYKSVIMVHLLIREGDKNVTLDYLSNDLDFFTL 88
                56678999999999999999999999999*****************...999*********************9988775554444444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.78
                 --B-TTS-B-HHH...HHHHHHHHHHHHT CS
        ENTH  95 kyideegkdegln...iRkkakkiislle 120
                 ky++ +gk  g++   i++   k+i  le
  CCD23988.1 231 KYLK-SGKSIGMKipvIKHITTKLIRSLE 258
                 2333.356666555667777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1555  (0.086731); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 4901.97
//
Query:       CCD23989.1  [L=134]
Description: hypothetical protein NDAI_0C03290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-46  156.4   0.0    3.3e-46  156.0   0.0    1.2  1  MPC       Mitochondrial pyruvate carriers


Domain annotation for each model (and alignments):
>> MPC  Mitochondrial pyruvate carriers
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.0   0.0   1.8e-50   3.3e-46       2     108 ..      10     116 ..       9     118 .. 0.98

  Alignments for each domain:
  == domain 1  score: 156.0 bits;  conditional E-value: 1.8e-50
         MPC   2 lkrflnsetgkktvhFWaPvlkwglviaglsDlkrpaekiSltqnlaLlatgliwtryslvikPkNyllaavnfvlelvglvqvsRilkyrlskkdekk 100
                 ++rf++s+tg+ktvhFWaP+lkwglviaglsD++rp+ek+S++qnl+Llat+liwtr+s+vikP+N+lla+vn vl+l++++++ Ri+++r++++d+++
  CCD23989.1  10 FRRFWQSQTGPKTVHFWAPTLKWGLVIAGLSDINRPVEKVSGAQNLSLLATALIWTRWSFVIKPRNLLLASVNGVLGLTAGYHLLRIVDFRIRNGDSMS 108
                 99************************************************************************************************* PP

         MPC 101 eakkeike 108
                 + +k+i +
  CCD23989.1 109 QLMKYIIN 116
                 *9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1015.80
//
Query:       CCD23990.1  [L=1079]
Description: hypothetical protein NDAI_0C03300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-06   26.8   0.1    1.3e-05   24.9   0.1    2.0  1  DDE_1     DDE superfamily endonuclease


Domain annotation for each model (and alignments):
>> DDE_1  DDE superfamily endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.1   7.3e-10   1.3e-05      57     134 ..     665     753 ..     611     783 .. 0.85

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 7.3e-10
       DDE_1  57 sifeeWL.kvfdkrle.........aekrkilLlldssr.shetvelleselqniklvflPassasllqPldqgvvselKarYrrqllq 134
                 +if++++ + f k+++           + + lL+++s     + + l   ++ ni+l+++P+ s+ +lqPld g+++ +K++ r+   q
  CCD23990.1 665 EIFSKYIiECFHKQTAkflqskgldYHSTRRLLIINSEIiPFQMDFLRVLNELNIDLLIIPSYSSTMLQPLDFGILNFFKSELRKLNRQ 753
                 799************99***99999677777777777651555555588999******************************9975444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1079 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2279  (0.127112); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.49
# Mc/sec: 6580.66
//
Query:       CCD23991.1  [L=252]
Description: hypothetical protein NDAI_0C03310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-58  197.1   0.0    4.6e-58  196.8   0.0    1.0  1  Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phospho


Domain annotation for each model (and alignments):
>> Glucosamine_iso  Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.8   0.0   2.6e-62   4.6e-58       6     225 .]      13     234 ..      10     234 .. 0.87

  Alignments for each domain:
  == domain 1  score: 196.8 bits;  conditional E-value: 2.6e-62
                      HHHHHHHHHHHHHHHHHHHHS-EEEEE--SHCHHHHHHHHHCSG.GGGGS-GGGEEEEESEEESS-TTSTT-HHHHHHHHTGGGS-.--GGGEE CS
  Glucosamine_iso   6 laealaarivealeealaergraslalsGGstpkalyealaeeeeaaaaldwskvhvflgDERfVpaddpdsNaklareallskvk.ipeanvh 98 
                      l+++l ++i+++++ al++ ++++la+sGGs+ + l +a  e+++ a+++dw+++++f++DER+Vp d+pdsN++++++a+l+ ++  +  +v+
       CCD23991.1  13 LSKSLGEHILKHQDIALKSARKFNLAISGGSLINVLRAAFIEDKTLASKVDWHQWNIFFVDERIVPLDNPDSNFGAFKKAVLDSLPeNKRPTVY 106
                      788999***********************************9998777***********************************98745555*** PP

                      -S-TTSSTHHHHHHHHHHHHHHHHCCSSSSSESEEEE---TTS-BTTB-TTCHH...HHCSSSSEEEESSBSTSSS-EEEE-HHHHTTCSEEEE CS
  Glucosamine_iso  99 pikesaaeapeaaaaayeeelkellakelpvfDlvlLGmGpDGHtaSLFPgspe...leetdrlvvavedspkpppeRitlTlpvlnsarevlf 189
                      +i+e+  ++ ++    ++ e ++ l+   +++Dlv+LG+GpDGHt+SLFPg+ +   l+e++++v++++dspkpp++Rit+Tlp+l +++e++f
       CCD23991.1 107 TIDEQLVKDGKDSYPLIAMEYEKILP---EKLDLVILGCGPDGHTCSLFPGESHrylLDEKAKKVMWCQDSPKPPSDRITVTLPLLGNSNEIFF 197
                      **977777555554444455554443...479*******************999643369999******************************* PP

                      EEESHHHHHHHHHHHTT..TTTSGGGGH--S..SEEEE CS
  Glucosamine_iso 190 lvaGeeKaealeevlsgedpeelPaalvegq..gellw 225
                      +++G++K+++++e++++ ++ elP+alv++   ++++w
       CCD23991.1 198 VAEGSSKQDIMHEIFDK-ENLELPCALVNHLygNKVTW 234
                      ***************95.5699******7333367766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2046.38
//
Query:       CCD23992.1  [L=1502]
Description: hypothetical protein NDAI_0C03320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-55  186.1   0.2    1.6e-54  184.8   0.0    1.8  1  Dna2             DNA replication factor Dna2
    8.2e-51  172.5   1.4      1e-50  172.1   0.3    1.8  2  AAA_12           AAA domain
    1.1e-29  104.0   0.0    1.1e-14   54.9   0.0    2.8  2  AAA_11           AAA domain
    3.7e-11   43.1   0.0    9.7e-11   41.7   0.0    1.7  1  AAA_30           AAA domain
    3.4e-10   40.5   0.0      8e-10   39.2   0.0    1.7  1  AAA_19           AAA domain
    9.1e-07   29.0   0.0    1.6e-06   28.2   0.0    1.4  1  PDDEXK_1         PD-(D/E)XK nuclease superfamily
    1.7e-06   27.9   3.7     0.0076   16.0   0.0    4.1  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00028   21.0   0.1    0.00098   19.3   0.1    2.0  1  Cas_Cas4         Domain of unknown function DUF83
    0.00059   20.4   0.1     0.0036   17.8   0.0    2.4  1  AAA_18           AAA domain
      0.002   17.7   0.4     0.0081   15.7   0.0    2.4  2  UvrD-helicase    UvrD/REP helicase N-terminal domain
     0.0047   16.6   0.0      0.012   15.3   0.0    1.7  1  SRP54            SRP54-type protein, GTPase domain
      0.006   17.0   0.0      0.016   15.6   0.0    1.7  1  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.013   15.1   0.0      0.059   13.0   0.0    2.1  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.018   14.9   0.1       0.29   11.0   0.0    2.8  3  NTPase_1         NTPase
       0.02   15.0   0.0      0.096   12.8   0.0    2.2  1  AAA_33           AAA domain
      0.027   13.9   0.0      0.066   12.7   0.0    1.6  1  Arf              ADP-ribosylation factor family
      0.028   14.7   0.4       0.25   11.6   0.0    2.9  2  AAA_22           AAA domain
      0.033   14.1   0.0       0.15   11.9   0.0    2.1  1  Helicase_RecD    Helicase
      0.071   12.9   0.0       0.15   11.8   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.074   12.6   0.0       0.21   11.1   0.0    1.7  1  AAA_7            P-loop containing dynein motor region
      0.081   11.6   0.0       0.95    8.1   0.0    2.1  2  PEPCK_ATP        Phosphoenolpyruvate carboxykinase
      0.083   12.8   0.1        0.2   11.5   0.1    1.6  1  MobB             Molybdopterin guanine dinucleotide synthesis
      0.085   13.3   0.0       0.41   11.1   0.0    2.3  1  AAA_17           AAA domain
      0.091   12.6   0.0       0.24   11.2   0.0    1.7  1  UvrD_C_2         UvrD-like helicase C-terminal domain
      0.093   12.7   0.1       0.42   10.6   0.0    2.3  1  ResIII           Type III restriction enzyme, res subunit
      0.098   12.7   0.1       0.93    9.5   0.1    2.9  1  AAA_14           AAA domain
       0.16   11.6   0.0        0.4   10.3   0.0    1.7  1  Terminase_6      Terminase-like family
       0.23   11.5   1.0        0.6   10.1   0.0    2.2  1  AAA_5            AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> Dna2  DNA replication factor Dna2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8   0.0   2.5e-57   1.6e-54       3     203 .]     426     642 ..     424     642 .. 0.91

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 2.5e-57
        Dna2   3 kseekktvvLrddWaetsvekgdiihivgkfe.eek.iiidnes........nllIlhPdlLvsaTsvanslsClRravLqerl.kvsgesskamliGt 90 
                 +++ek++v++r +W+++++++gd+ihi++ ++ e+k ++ d+ +        nllIl+PdlL saTs+++s++ClRr+v+q  + +  ge+s am+iG+
  CCD23992.1 426 SQREKSSVIIRRPWSYLEYDVGDVIHIIEGKNiENKrLLSDDINpktqlandNLLILNPDLLFSATSIGGSIDCLRRSVIQASFnDPRGEPSIAMTIGN 524
                 78999**********************87666655544444433455666669*******************************888899********* PP

        Dna2  91 ilHelfqkal....leeeldkekleelldklleknleelyalglteeeakeeikekl.eeiekwakkyvkksnkakakvekkkekkeklsiskvldiEE 184
                 i+Hel+q+++    ++e l+ e+l+e ld lle+ + +++ ++++ +++ke+i + + e+i ++++++v+ksn  ++++ ++ +k++ lsis+v+diEE
  CCD23992.1 525 IVHELLQDSFrymmSHELLTIEYLDERLDFLLESFKFDIMVCNESLADVKEQIVKDHaENILQFVNHFVQKSNYGCYVSVSGLKKTQPLSISDVIDIEE 623
                 *********999877899*********************************9877665***************************************** PP

        Dna2 185 niwspkyGLKGkiDatvev 203
                 niws++yGLKG +D tve+
  CCD23992.1 624 NIWSSTYGLKGYLDLTVEA 642
                 *****************85 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       7.1   4.6e+03     143     176 ..     833     868 ..     721     874 .. 0.55
   2 !  172.1   0.3   1.6e-53     1e-50       1     198 [.    1207    1419 ..    1207    1420 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.1
      AAA_12 143 ievntvdgfQGrekdv..iilslVRsnekkeigflk 176
                 ++   vd +QG+ +++    +s+ R+n+++++++l+
  CCD23992.1 833 LSNLIVDDIQGSSQQCgkYTYSFKRQNQDETLSMLH 868
                 455567777877766533456666666666666555 PP

  == domain 2  score: 172.1 bits;  conditional E-value: 1.6e-53
      AAA_12    1 lerSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdae.svkkrele..................aqealeepleplvfidvekseee 78  
                  le+Slf+ ++++++ +vv L+ qYRm+++I+ +++ l+Y++kLk+++ +vk+++l+                  +  ++ +p+++++f++ +k  e 
  CCD23992.1 1207 LEESLFKYFCERQPDSVVELTYQYRMCEDIVMLSNYLIYENKLKCGTeQVKNQSLHiphlenlgqyrkadadqdWLMDVLDPQRKVIFMNYDKCVEI 1303
                  589*******************************************9678888888***********************************999887 PP

      AAA_12   79 kekke.ksyiNeeEaelvvklvekllkkgseeerkkigvitpYraqvellkkklkekeeeksekeievntvdgfQGrekdviilslVRsnekkeig. 173 
                  +e+ + ++++N  Eael  ++v+ +l++g+++  +k+gv+t Yraq++llkk l +++ +     +e+ t d+fQGr+kd+ii+s+VRsn++ + g 
  CCD23992.1 1304 TEQANnDTITNVGEAELTRQCVKGILTSGVSS--DKVGVMTLYRAQLKLLKKVLGSAAYDG----LEILTADQFQGRDKDCIIISMVRSNAHLNGGs 1394
                  77766699************************..*********************877776....9************************8888777 PP

      AAA_12  174 flkderrlNValTRAkskliivGnk 198 
                  +lk+ rr+NVa+TRAksklii+G++
  CCD23992.1 1395 LLKELRRVNVAMTRAKSKLIIIGSQ 1419
                  ***********************97 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   7.6e-15   4.9e-12       2     107 ..    1030    1116 ..    1029    1129 .. 0.94
   2 !   54.9   0.0   1.7e-17   1.1e-14     191     260 ..    1131    1199 ..    1119    1200 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 7.6e-15
      AAA_11    2 lndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgneee 98  
                  +n+ q eai ++++ ++ +li G PG+gKT++i el+++l          + ++ +L+++ ++ AvD++l++l +          + +i+R+g++  
  CCD23992.1 1030 FNENQIEAIDRVMRANDYALILGMPGSGKTTVISELIKML---------VADNKSVLLTSYTHSAVDNILLKLKD---------VEFDIIRLGSKR- 1107
                  8***************************************.........7899********************99.........99*********9. PP

      AAA_11   99 riseavksv 107 
                  r++++++++
  CCD23992.1 1108 RVHPDTQRY 1116
                  899998875 PP

  == domain 2  score: 54.9 bits;  conditional E-value: 1.7e-17
      AAA_11  191 evldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatvis 260 
                  e ++ +++v+tT+ +     ++   k+fd+vi DEA+q   p +l Plr+g  k+v+vGD+ QLp+ v++
  CCD23992.1 1131 ETINGVSVVATTCLSLRDIMFNLRSKDFDYVILDEASQISIPVALGPLRFG-IKFVMVGDHYQLPPLVKN 1199
                  568999**********7777777777*************************.9***************97 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   1.5e-13   9.7e-11       2     133 ..    1030    1198 ..    1029    1238 .. 0.75

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 1.5e-13
      AAA_30    2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLa.........................eelgieasti 73  
                  +n++Q +a+++++  +d +a++ G +G+GKtt++++l +++ a++++v++ + t+ a +++                                    
  CCD23992.1 1030 FNENQIEAIDRVMRAND-YALILGMPGSGKTTVISELIKMLVADNKSVLLTSYTHSAVDNILlklkdvefdiirlgskrrvhpdtqrY--------- 1116
                  689*************9.******************************************6545655555444444433333332220......... PP

      AAA_30   74 akllkrlk..................................grarlepg.tllivDEagmvdtkqlaallkaaekagakvilvGDerQlasVea 133 
                                                            +  r + + + +i DEa+ +++  +   l+     g+k ++vGD+ Ql++  +
  CCD23992.1 1117 -------LpkydslntyeelletingvsvvattclslrdimfN-LRSK-DfDYVILDEASQISIPVALGPLRF----GIKFVMVGDHYQLPPLVK 1198
                  .......033334444444444555888888888888887642.3333.36**************99776664....899**********99654 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.3e-12     8e-10       2     143 ..    1035    1195 ..    1034    1198 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 1.3e-12
      AAA_19    2 reav.e.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae............................ 68  
                   ea+ +   +++  l+++ pG+GKT+v+ + +++lv+ +    +++ll ++t+ A++++  +l+ ++ +                            
  CCD23992.1 1035 IEAIdRvMRANDYALILGMPGSGKTTVISELIKMLVADN----KSVLLTSYTHSAVDNILLKLKDVEFDiirlgskrrvhpdtqrylpkydslntye 1127
                  56774456678899***********************99....89******************888888999***9****99999999999966666 PP

      AAA_19   69 ..atTiHrlalldfddlltealelleeaeeekklqeee..llivDEfqdvd.elqyrLlkallgekkklllvGDpdQliy 143 
                     +Ti ++++++++ l      +        +l++++  ++i DE+++++ +++   l+       k+++vGD+ Ql++
  CCD23992.1 1128 elLETINGVSVVATTCLSLRDIMF--------NLRSKDfdYVILDEASQISiPVALGPLRFGI----KFVMVGDHYQLPP 1195
                  666666666655555555333333........22222224**************999999888....69*********97 PP

>> PDDEXK_1  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.5e-09   1.6e-06       3     254 ..     489     756 ..     488     757 .. 0.65

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 2.5e-09
    PDDEXK_1   3 SvsrletfleCplrfflryllglre.eeeleapdlGtlvHaaleefye....wkkldke.dleelleeaveelwpellleeei...lessarlrylaek 92 
                 S++++    +C +r  ++  ++ ++ e++++  ++G++vH++l++ ++          e    e+l+e ++ l+++ +++  +    +++ +++  +++
  CCD23992.1 489 SATSIGGSIDCLRRSVIQASFNDPRgEPSIAM-TIGNIVHELLQDSFRymmsH-----ElLTIEYLDERLDFLLESFKFDIMVcneSLADVKEQIVKDH 581
                 56666666667777777777777553444444.9**************55432.....23444455455554444433333331112333344555555 PP

    PDDEXK_1  93 lkevleklverlaeeleakrg..frpvale.lefg...............gekvrLkGriDr.vd.dkeg..elriiDyKtgsappkskelaelkeglQ 169
                 ++++l+ +v+++ +  +++ g  +++ +l+    +               ++++ LkG +D+ v+ ++e+  ++  ++ Ktg+ +         +++ Q
  CCD23992.1 582 AENILQ-FVNHFVQ--KSNYGcyVSVSGLKkT--QplsisdvidieeniwSSTYGLKGYLDLtVEaNTENikCIAPLEVKTGKYRGL-------SHEAQ 668
                 555555.5577777..7777776666666641..134455778889*9*648999*******66676666889999*******4433.......4668* PP

    PDDEXK_1 170 lllYllalaegeelkeegepagalylrleepkvkdeevvkkmalteeeleallqeleelaeeil..ag.efparpskk...CeyCpyksvC 254
                  l+Y l+l  + +l+    +  +ly+  ++ ++k +++++++++    ++++++ ++++++ei   +  e++  p      Ce+C  k+ C
  CCD23992.1 669 GLIYTLLLNDKYDLPV---DFFLLYYTRDKSMTKFPKILHSIKHILMLRNQMATTFKHQLKEITnrERlEYKLPPLAGaslCENCNTKDMC 756
                 ***********55542...56666666655888888888888666666688888888888888744223555555555779********** PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-05    0.0076       2      34 ..    1049    1078 ..    1048    1097 .. 0.75
   2 ?    2.2   0.0      0.19   1.2e+02      57     131 ..    1152    1220 ..    1144    1271 .. 0.67
   3 !    7.8   0.0    0.0038       2.5     155     233 ..    1332    1416 ..    1296    1417 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
  Viral_helicase1    2 vvhGvpGcGKStlirkllrtsliltvnrptael 34  
                       ++ G+pG+GK+t+i +l+++   l+++++++ l
       CCD23992.1 1049 LILGMPGSGKTTVISELIKM---LVADNKSVLL 1078
                       689*****************...5555553444 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.19
  Viral_helicase1   57 lvkstkgkililDEylllhaGyill.laalskaklvilfGDplQipfhsrnasfllahlpsslshrvgrrttyllp 131 
                       +++s++++++ilDE+ +     i + l  l     ++++GD++Q p   +n+ +    l+ sl ++++ r     p
       CCD23992.1 1152 NLRSKDFDYVILDEASQIS---IPVaLGPLRFGIKFVMVGDHYQLPPLVKNEAARSGGLEESLFKYFCERQ----P 1220
                       45556799*******9988...55523334434467889******99988887777777777777776663....3 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0038
  Viral_helicase1  155 kvetepkgqekvlvyltftqalkealgvr.....evttvhevqGltfdkVtlvllketdlelis.....esrenllvAlTRhrkslvil 233 
                        v+++ +g+  +++y ++ + lk+ lg+      e++t  + qG   d  ++   +++  +l +     ++   + vA+TR++++l+i+
       CCD23992.1 1332 GVSSDKVGV--MTLYRAQLKLLKKVLGSAaydglEILTADQFQGRDKDCIIISMVRSNA-HL-NggsllKELRRVNVAMTRAKSKLIII 1416
                       456777777..899999999999999999999999**********99988876664443.33.33667777999************997 PP

>> Cas_Cas4  Domain of unknown function DUF83
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.5e-06   0.00098      66     161 ..     649     757 ..     620     758 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.5e-06
    Cas_Cas4  66 klvvvEvKkskkkeeaaklQllyYlllLe.kkgveikeGvleypkekkree...........velteelreelekaikeieeiisse.kppkvkkkkiC 151
                  + + EvK +k +  ++++Q l Y llL+ k ++ ++   l+y   k +++           + l ++     ++ +kei +  + e k p+ + +++C
  CCD23992.1 649 CIAPLEVKTGKYRGLSHEAQGLIYTLLLNdKYDLPVDFFLLYYTRDKSMTKfpkilhsikhiLMLRNQMATTFKHQLKEITNRERLEyKLPPLAGASLC 747
                 34569********************************8899999999999999***9*9998889999999999999999999888889********** PP

    Cas_Cas4 152 kkCayaelCl 161
                 ++C  +++C+
  CCD23992.1 748 ENCNTKDMCM 757
                 *********7 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   5.7e-06    0.0036       2      44 ..    1049    1089 ..    1049    1106 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 5.7e-06
      AAA_18    2 lltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44  
                  l+ G+pG+GKtt+  eL k+l  +   ++v+  +++   vd+ 
  CCD23992.1 1049 LILGMPGSGKTTVISELIKML--VADNKSVLLTSYTHSAVDNI 1089
                  689*****************9..99999999999988888887 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.5         8   5.1e+03     152     194 ..      27     101 ..      12     184 .. 0.54
   2 !   15.7   0.0   1.3e-05    0.0081       7      81 ..    1036    1122 ..    1030    1262 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 8
                    HHHHHHHHHHHCCCCCH................................HHHCCCHHHHHCHHHHHHHHHHHTTC CS
  UvrD-helicase 152 kkleklikelsksrnik................................keelslskskaeelrelvskakekql 194
                    +k+ k+ +e s++r+ k                                  +++ ++ + +e   +vsk+ke++ 
     CCD23992.1  27 QKVTKQGTESSRKRKRKyqfapvdnldsksappsavlksipvsqvrntiRTKRKVKTDVSIEKVPVVSKIKEENE 101
                    333333333333333333333333333333334444444444444444422222222222222233333333332 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.3e-05
                     HHHHS...-SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH......HHHHCCHHCTT-H.......H CS
  UvrD-helicase    7 eaias...lggpilveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee......alkkaeqessdde.......r 81  
                     eai      +   l++  +GsGKT+v+ e+i  l++ +    +++l+  +T  A + +  +++       +l+++++ ++d +        
     CCD23992.1 1036 EAIDRvmrANDYALILGMPGSGKTTVISELIKMLVADN----KSVLLTSYTHSAVDNILLKLKDvefdiiRLGSKRRVHPDTQrylpkydS 1122
                     55544333577899**************9999998877....9************999999998888888666655555555534433333 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-05     0.012       3      36 ..    1047    1080 ..    1045    1108 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.8e-05
                  EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE CS
       SRP54    3 villvGlqGaGKTttlaKLaallkkegkkvllva 36  
                  + l++G+ G+GKTt ++ L ++l +++k+vll +
  CCD23992.1 1047 YALILGMPGSGKTTVISELIKMLVADNKSVLLTS 1080
                  5799***************************986 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.6e-05     0.016       7      54 ..    1033    1076 ..    1032    1117 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.6e-05
      AAA_16    7 eeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdg.gi 54  
                  +++e++ +++++       + l+ G++G+GK++++ el + l +d+  +
  CCD23992.1 1033 NQIEAIDRVMRAN-----DYALILGMPGSGKTTVISELIKMLVADNkSV 1076
                  5666666655522.....689*****************99888875233 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.2e-05     0.059       4      52 ..    1049    1097 ..    1047    1127 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.2e-05
                  EEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCHCCCT. CS
        cobW    4 vltGflGsGKTtLlnhllenraglklavivNefgevsiDaellretgve 52  
                  ++ G +GsGKTt++++l++     +  v++  + + ++D+ ll+ ++ve
  CCD23992.1 1049 LILGMPGSGKTTVISELIKMLVADNKSVLLTSYTHSAVDNILLKLKDVE 1097
                  688***************9988888889999999899999988877665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       3.1     2e+03      65     108 ..     842     887 ..     822     897 .. 0.78
   2 ?   11.0   0.0   0.00045      0.29       4      30 ..    1050    1076 ..    1047    1109 .. 0.89
   3 ?   -0.9   0.0       2.1   1.4e+03     101     144 ..    1312    1354 ..    1301    1367 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.1
                 ---SSEETTEEE-HHH.HHHHHHHHHHHHHHHH-.EEEE---STTG CS
    NTPase_1  65 akreprvgkyvvdves.feelalealrkalsead.viviDEiGkmE 108
                 + ++ + gky+   ++  ++ +l++l+ ++  +d vi+ DE G + 
  CCD23992.1 842 QGSSQQCGKYTYSFKRqNQDETLSMLHSQIGINDyVIISDENGHFS 887
                 567788999988887746667899999999888879999**99875 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00045
                  EE--TTSSHHHHHHHHHHHH...GGGE CS
    NTPase_1    4 iTGppGvGKtTlvkkvlellkssgvkv 30  
                  i G+pG+GKtT+++ ++++l  ++ +v
  CCD23992.1 1050 ILGMPGSGKTTVISELIKMLVADNKSV 1076
                  77******************9888766 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 2.1
                  E---STTGGG-HHHHHHHHHHHTTTSEEEEE--SS--SHHHHHH CS
    NTPase_1  101 iDEiGkmElkskkfkeaveevLksekpvlavihrrkdlalveei 144 
                  i  +G+ El+ + +k  ++  ++s+k+ ++++ r+ +l+l++++
  CCD23992.1 1312 ITNVGEAELTRQCVKGILTSGVSSDKVGVMTLYRA-QLKLLKKV 1354
                  5579999*************************999.77888776 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00015     0.096       4      33 ..    1050    1105 ..    1048    1149 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00015
      AAA_33    4 lvGlpGsGKstlaerllkklg....avllssdt......................l 33  
                  + G+pGsGK+t++ +l+k l      vll+s t                       
  CCD23992.1 1050 ILGMPGSGKTTVISELIKMLVadnkSVLLTSYThsavdnillklkdvefdiirlgS 1105
                  67**************7777666668888888766666666665555555555443 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0    0.0001     0.066      17      84 ..    1048    1122 ..    1035    1124 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.0001
                  EEEEESTTSSHHHHHHHHHHSSCEE.....CSSSSSEEEEEE..EETTEEEEEEEE-SSGGGGGGGGGGCTTESE CS
         Arf   17 illlGLDnaGKtTilkklkleelvt.....tvPTigfnveel..eiknlkftvwDvGGqeklRplWknYfektda 84  
                   l+lG+ ++GKtT++ +l +  +++      +  +++ v+++  + k+++f +  +G ++++ p  ++Y++k d+
  CCD23992.1 1048 ALILGMPGSGKTTVISELIKMLVADnksvlLTSYTHSAVDNIllKLKDVEFDIIRLGSKRRVHPDTQRYLPKYDS 1122
                  59***********9877644333221222256667888887522679*****************99999998775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         7   4.5e+03      58      97 ..     366     405 ..     354     428 .. 0.78
   2 ?   11.6   0.0   0.00039      0.25       8      45 ..    1048    1079 ..    1042    1196 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7
      AAA_22  58 rellralglelkaerlsseellealeqalraraviellii 97 
                  ++ ++l+++ +++ ++ +e++++ + a+++++v++l+i+
  CCD23992.1 366 DQISKNLKVKSDTPDQNMSEYVKLAQAAVERKGVTRLVIL 405
                 5677788888888889999999999999999999555554 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00039
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfv 45  
                   ++ G +G+GKTt++ +l + l+++      +++v++ 
  CCD23992.1 1048 ALILGMPGSGKTTVISELIKMLVAD------NKSVLLT 1079
                  5899******************876......3333322 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00023      0.15       2     106 ..    1050    1173 ..    1049    1186 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00023
  Helicase_RecD    2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflak.glealglke.................eekkkkaekaelrvr..... 72  
                     + + +G GK++++  +++ l+a++k ++l+t+ ++++v++++  l+  +++ ++l +                               +     
     CCD23992.1 1050 ILGMPGSGKTTVISELIKMLVADNK-SVLLTSYTHSAVDNILLKLKDvEFDIIRLGSkrrvhpdtqrylpkydsL-------------Ntyeel 1129
                     77889*****************987.9***********9998777441344433333446655544443332220.............122222 PP

  Helicase_RecD   73 ..........kqrieyiapdellklkeqa...............dllvvDEAAaiplpl 106 
                                ++               +               d ++ DEA++i +p+
     CCD23992.1 1130 letingvsvvATT---------------ClslrdimfnlrskdfDYVILDEASQISIPV 1173
                     2222233322222...............0223333334444445999999999999886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00024      0.15      20      50 ..    1043    1073 ..    1028    1077 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00024
      AAA_29   20 dlkgatlltGpsGsGKSTllDAiqalLvpak 50  
                  + ++  l+ G  GsGK+T++  ++ +Lv+++
  CCD23992.1 1043 RANDYALILGMPGSGKTTVISELIKMLVADN 1073
                  334589**************99999999887 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00032      0.21      26      66 ..    1038    1078 ..    1023    1092 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00032
       AAA_7   26 lelllknkkpvllvGptGtGKtviikdllkkldkekylslt 66  
                  ++ +++++   l+ G  G+GKt++i++l+k l  ++ ++l 
  CCD23992.1 1038 IDRVMRANDYALILGMPGSGKTTVISELIKMLVADNKSVLL 1078
                  678899999********************999866655544 PP

>> PEPCK_ATP  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.22   1.4e+02     247     310 ..     593     655 ..     570     682 .. 0.70
   2 ?    8.1   0.0    0.0015      0.95     209     242 ..    1044    1077 ..    1032    1089 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.22
                 EEES-SEEEEE-TT--TTTSHHHHHHHSTT-EEES-EE-TT..T--EETT--SS-S--EEEEEGGG CS
   PEPCK_ATP 247 vfniegGcYaKtidLskekepeiynairfgavlENvvldee..trevdfddtslteNtrvaypieh 310
                 v   + GcY+ + +L+k++  +i + i  +   EN+  ++   ++ +d + +  teN ++  p+e 
  CCD23992.1 593 VQKSNYGCYVSVSGLKKTQPLSISDVIDIE---ENIWSSTYglKGYLDLTVEANTENIKCIAPLEV 655
                 555667***********9999**9999855...666554431146677778888999999999874 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0015
                  TS-EEEEEE-TTSSHHHHH-BTTB-EEESSEEEE CS
   PEPCK_ATP  209 kgdvalfFGLSGtGKTtLsadperkligdDehgw 242 
                  ++d al +G+ G+GKTt+  +  ++l++d+  ++
  CCD23992.1 1044 ANDYALILGMPGSGKTTVISELIKMLVADNKSVL 1077
                  4699************************998765 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00032       0.2       4      40 ..    1050    1086 ..    1048    1097 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00032
        MobB    4 ivgksgsGKTtLleklipelkarglrvgtiKhahhgf 40  
                  i g+ gsGKTt +++li++l a + +v +   +h ++
  CCD23992.1 1050 ILGMPGSGKTTVISELIKMLVADNKSVLLTSYTHSAV 1086
                  7899*****************9999887766666655 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00064      0.41       1      18 [.    1051    1068 ..    1051    1083 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00064
                  EE-TTSSHHHHHHHHHHH CS
      AAA_17    1 lGgPGsGKgtqceklvek 18  
                  lG+PGsGK+t++++l + 
  CCD23992.1 1051 LGMPGSGKTTVISELIKM 1068
                  7************99876 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00038      0.24       4      52 .]    1365    1416 ..    1363    1416 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00038
    UvrD_C_2    4 altihkaQGsefpaVivfdpdlaaarmgel...rrrlLYtavTRAreklilv 52  
                  +lt  ++QG   +++i+  +   a+ +g       r + +a+TRA+ kli++
  CCD23992.1 1365 ILTADQFQGRDKDCIIISMVRSNAHLNGGSllkELRRVNVAMTRAKSKLIII 1416
                  5777899999999999977777676666557999999*************96 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00066      0.42       3      73 ..    1029    1092 ..    1027    1170 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00066
                  EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHH CS
      ResIII    3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtlee 73  
                  +++e Q+eai++++      +d   li    G+GKT v+ +li+ l   +k   +l+   + s ++  l +
  CCD23992.1 1029 SFNENQIEAIDRVMR----ANDYA-LILGMPGSGKTTVISELIKMLVADNK--SVLLTSYTHSAVDNILLK 1092
                  57899********83....34455.555556**************998644..777766666555555544 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1    0.0014      0.93       4      43 ..    1047    1086 ..    1044    1171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0014
      AAA_14    4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderd 43  
                    +i G+  +GKTt++ +lik l ++++s+l  +  +   
  CCD23992.1 1047 YALILGMPGSGKTTVISELIKMLVADNKSVLLTSYTHSAV 1086
                  56899***************99998889888877766555 PP

>> Terminase_6  Terminase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00063       0.4       2     109 ..    1050    1170 ..    1049    1181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00063
                   EEE-SSS-HHHHHHHHHHHHHHSSSS.-EEEEEESSHHHHHHHHH.................HHHHHHHTS-T.TTS--EEEE-SSEEEE....TT CS
  Terminase_6    2 ilggrqsGKTfagarellrhalgrgprnqvflsasktqareeggq.................fekgigelake.ildiefeesaknlvvl....sn 75  
                   ilg ++sGKT+++++ + + ++++++   v l +++++a + +++                  ++++++   + +   ++e              n
   CCD23992.1 1050 ILGMPGSGKTTVISELIKMLVADNKS---VLLTSYTHSAVDNILLklkdvefdiirlgskrrVHPDTQRYLPKyDSLNTYE--------ElletIN 1134
                   67779***********9999999997...************99999**977777766555553333333333324444444........0344479 PP

                   S-E.EEEES.....SHHHHHTS--SEEEEESGGGST CS
  Terminase_6   76 Gas.lhflslese.taggiqGaqidliyfDElteip 109 
                   G s +  + l+ +    + + + +d++++DE+++i+
   CCD23992.1 1135 GVSvVATTCLSLRdIMFNLRSKDFDYVILDEASQIS 1170
                   9998887777777799999************99886 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00094       0.6       3      36 ..    1049    1082 ..    1048    1089 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00094
                  EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT- CS
       AAA_5    3 lLvGppGtgKselaerlaaalnreveyvqltrdt 36  
                  l++G pG+gK++++ +l ++l +    v+lt++t
  CCD23992.1 1049 LILGMPGSGKTTVISELIKMLVADNKSVLLTSYT 1082
                  789******************4444445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.46
# Mc/sec: 9720.80
//
Query:       CCD23993.1  [L=722]
Description: hypothetical protein NDAI_0C03330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.4    9.0   5.5        3.6    7.7   5.5    1.7  1  PRIMA1    Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.5    0.0002       3.6      18      40 ..      94     115 ..      74     128 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0002
      PRIMA1  18 qeacqcrrypplppppppppppr 40 
                 ++ +   + p   pppppppppr
  CCD23993.1  94 NNRTSIVPLPNS-PPPPPPPPPR 115
                 333333344444.4555555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1613  (0.089966); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 5168.69
//
Query:       CCD23994.1  [L=2414]
Description: hypothetical protein NDAI_0C03340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.6e-223  741.1  14.1     4e-223  740.5  14.1    1.3  1  PROCN           PROCN (NUC071) domain
   4.8e-122  405.9   0.4     1e-121  404.9   0.4    1.6  1  PRP8_domainIV   PRP8 domain IV core
      7e-85  282.8   1.2      7e-85  282.8   1.2    2.1  2  U6-snRNA_bdg    U6-snRNA interacting domain of PrP8
    3.8e-77  257.4   2.2    8.4e-77  256.3   2.2    1.6  1  PRO8NT          PRO8NT (NUC069), PrP8 N-terminal domain
    8.3e-70  233.1   0.0    2.2e-69  231.7   0.0    1.8  2  U5_2-snRNA_bdg  U5-snRNA binding site 2 of PrP8
    2.9e-48  162.8   0.0    6.8e-48  161.7   0.0    1.7  1  PROCT           PROCT (NUC072) domain
    1.4e-45  153.5   0.9      4e-45  152.1   0.9    1.9  1  RRM_4           RNA recognition motif of the spliceosomal PrP
    0.00088   19.2   0.2     0.0033   17.4   0.0    2.0  2  JAB             JAB1/Mov34/MPN/PAD-1 ubiquitin protease


Domain annotation for each model (and alignments):
>> PROCN  PROCN (NUC071) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  740.5  14.1  1.8e-226    4e-223       3     407 .]     473     875 ..     471     875 .. 0.99

  Alignments for each domain:
  == domain 1  score: 740.5 bits;  conditional E-value: 1.8e-226
       PROCN   3 ktkdalsllfapaPfnlrsgktkraedvplikkwykeraekeePvkvrvsyqkllkkyvlnelkkkkkkkkkkkkllkelketkffqktkldwveaGlq 101
                 + kda+sl++ap+Pfn+rsgkt ra+d++l+kkwy ++ ++++Pvkvr+syqkllk+yv+nelk+kk  + kk kllk+l++tk+fq+t++dwveaGlq
  CCD23994.1 473 ELKDAMSLYHAPYPFNRRSGKTTRAQDIALVKKWYLQHPDEKYPVKVRISYQKLLKNYVANELKSKKPINIKKIKLLKNLRNTKYFQQTTIDWVEAGLQ 571
                 5799*********************************************************************************************** PP

       PROCN 102 vvrqgfnmlnllihrksltylhldynfnlkPtktlttkerkksrlGnafhlirellrlvkllvdahvqyrlgkidayqladglqyifnhvgqltGiyry 200
                 ++rqg+nmlnlli +++ltylhldynfnlkPtktlttkerkksr+Gn+fhl+re+l++vkllvdah+qyrlg++da+qladg++yi+nh+gqltGiyry
  CCD23994.1 572 LCRQGHNMLNLLIYKRGLTYLHLDYNFNLKPTKTLTTKERKKSRFGNTFHLMREILKVVKLLVDAHTQYRLGNVDAFQLADGIYYILNHLGQLTGIYRY 670
                 *************************************************************************************************** PP

       PROCN 201 kykvmrqirackdlkhviysrfntgevgkGPGvGfwaPswrvwvfflrGiiPllerwlgnllarqfeGrkskevaktitkqrveseydlelraavlhdi 299
                 kykvm+qirackdlkhv+y+rfn+  +gkGPG+Gfw+P+wrvw+ff+rGiiP+lerwlgnll+rqfeGr s+ev+kt+tkqrve++ydlelra+v++di
  CCD23994.1 671 KYKVMHQIRACKDLKHVVYYRFNK-ILGKGPGCGFWQPAWRVWIFFMRGIIPILERWLGNLLSRQFEGR-SNEVVKTTTKQRVEAYYDLELRASVMNDI 767
                 ************************.9*******************************************.8999************************* PP

       PROCN 300 ldmlPegvkqskaktilqhlseafrcwkanipwkvPglpepienlilryvkakadewisvahynrerikrgatvdktvvkknlGrltrlylkeeqerqa 398
                 l+m+Peg++q+ka+tilqhlsea+rcwkanipw+vPg+pepi+n+i+ryvkakad w+s+ahynreri+rg +v+ktv+kknlGrltrl++k+eqerq+
  CCD23994.1 768 LEMIPEGIRQNKARTILQHLSEAWRCWKANIPWDVPGMPEPIKNIIERYVKAKADRWVSSAHYNRERIQRGVHVEKTVMKKNLGRLTRLWIKNEQERQN 866
                 *************************************************************************************************** PP

       PROCN 399 eylkdgpyi 407
                 e++k+gp+i
  CCD23994.1 867 EIEKNGPEI 875
                 *******86 PP

>> PRP8_domainIV  PRP8 domain IV core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.9   0.4  4.5e-125    1e-121       1     230 []    1833    2062 ..    1833    2062 .. 1.00

  Alignments for each domain:
  == domain 1  score: 404.9 bits;  conditional E-value: 4.5e-125
  PRP8_domainIV    1 eallnsqnyaelfsneiklfvddtnvyrvtvhktfeGnlttkpvnGavfilnPktGqlflkvihtsvwagqkrlsqlakwkaaeevaalvrslP 94  
                     e++lns+nyaelf+++iklfvddtnvyrvtvhktfeGn++tk+vnG++filnPktG+lflk+ihtsvwagqkrlsqlakwk+aeev+alvrslP
     CCD23994.1 1833 EPFLNSSNYAELFNDDIKLFVDDTNVYRVTVHKTFEGNVATKAVNGCIFILNPKTGHLFLKIIHTSVWAGQKRLSQLAKWKTAEEVSALVRSLP 1926
                     89******************************************************************************************** PP

  PRP8_domainIV   95 veeqPkqiivtrkglldplevhlldfPnivikgselkLPfkavlkiekladlvlkatepkmvlfnlyddWlesissytafsrlililralkink 188 
                     +eeqPkqiivtrk++ldplevh+ldfPni+++++el+LPf+a ++i+kl+d+v+katep+mvlfn+yddWl++issytafsrlil+lr+lk ++
     CCD23994.1 1927 KEEQPKQIIVTRKAMLDPLEVHMLDFPNIAMRPTELRLPFSASMSIDKLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLILLLRGLKTDE 2020
                     ********************************************************************************************** PP

  PRP8_domainIV  189 ekakkilkpdkevvvkehhlwptlsdeeWvevevklrdlila 230 
                     ekak+i+  d ++ vk+hhlwp++sde+W+++e+++rdlil+
     CCD23994.1 2021 EKAKMIILGDPTIPVKPHHLWPSFSDEQWISIESEMRDLILN 2062
                     ****************************************96 PP

>> U6-snRNA_bdg  U6-snRNA interacting domain of PrP8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.9   6.6e+03      14      42 ..     655     683 ..     647     694 .. 0.76
   2 !  282.8   1.2   3.1e-88     7e-85       1     158 [.    1515    1672 ..    1515    1673 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.9
  U6-snRNA_bdg  14 wtsarhdgkllnleryradviealGgvea 42 
                   ++  +h g+l+ + ry+ +v++ + + + 
    CCD23994.1 655 YYILNHLGQLTGIYRYKYKVMHQIRACKD 683
                   677899***********999998877654 PP

  == domain 2  score: 282.8 bits;  conditional E-value: 3.1e-88
  U6-snRNA_bdg    1 fkkyqllksekfawtsarhdgkllnleryradviealGgveailehtlfkatsfksweglvwdkasgfeeslkakkltnaqrsGlsqiPnrrftl 95  
                    fkky+l ++++f+wt+a+hdgkl+nl++yr+dvi+alGg+e+ilehtlfk+t+f+swegl+w+kasgfe+sl+ kklt+aqr+GlsqiPnrrftl
    CCD23994.1 1515 FKKYSLERNSPFWWTNAHHDGKLWNLNSYRTDVIQALGGIETILEHTLFKGTGFTSWEGLFWEKASGFEDSLQFKKLTHAQRTGLSQIPNRRFTL 1609
                    89********************************************************************************************* PP

  U6-snRNA_bdg   96 WWsPtinranvyvGfqvqldltGvfmhgklptlkisliqifrahlWqkihesvvmdllqvldd 158 
                    WWsPtinranvyvGf vqldltG+f+hgk+ptlkisl+qifrahlWqkihesvv d++q+ld 
    CCD23994.1 1610 WWSPTINRANVYVGFVVQLDLTGIFLHGKIPTLKISLVQIFRAHLWQKIHESVVFDICQILDG 1672
                    ************************************************************996 PP

>> PRO8NT  PRO8NT (NUC069), PrP8 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.3   2.2   3.8e-80   8.4e-77       1     152 []     136     287 ..     136     287 .. 0.99

  Alignments for each domain:
  == domain 1  score: 256.3 bits;  conditional E-value: 3.8e-80
                 -----HHHHHHHHHHHTTT-SGGGTTTHHHHHHHHTTSHHHHHHHHTT---TT-S--B--EEEETTT--EEE-----B-HHHHHHHHHHHHHHHHHHHH CS
      PRO8NT   1 keelPpehlRkiikdhgdlsskkfksdkrvylgalkylPhavlkllenmpmpweevrevkvlyhvtgaitfvneiprviepvylaqwstmwiamrrekr 99 
                 k ++P ehlRkii+ h+d++sk+f++ kr++l alky+Phavlkllenmp+pwe+v+evkvlyh+tgaitfvneiprviep+y+aqwst wiamrrekr
  CCD23994.1 136 KVDMPHEHLRKIIEGHSDMASKRFDYGKRAFLVALKYMPHAVLKLLENMPQPWEQVKEVKVLYHITGAITFVNEIPRVIEPIYTAQWSTAWIAMRREKR 234
                 679************************************************************************************************ PP

                 TTS------SS-S-SSS----H.HHHHHH-----------TTTSTTTTTTTT- CS
      PRO8NT 100 drrhfkrlrfppfddeeppldyadnildvepleaiqleldeeedeavvdwlyd 152
                 dr+hfkr+rfp fdd+eppl+y ++i+ +ep +ai+l lde++d+ v+dwlyd
  CCD23994.1 235 DRTHFKRMRFPGFDDDEPPLSYPEHIETIEPSDAITLPLDEKDDKWVKDWLYD 287
                 ****************************************************9 PP

>> U5_2-snRNA_bdg  U5-snRNA binding site 2 of PrP8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       6.2   1.4e+04      43      69 ..    1244    1270 ..    1232    1280 .. 0.77
   2 !  231.7   0.0   9.8e-73   2.2e-69       1     134 []    1283    1416 ..    1283    1416 .. 0.99

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 6.2
  U5_2-snRNA_bdg   43 gsttftkiaakwntalialltyfreav 69  
                       st+f ++ +k n +l+  +  f   +
      CCD23994.1 1244 WSTSFASVYSKNNPNLLFTMCGFEVRI 1270
                      5899*********99998887776555 PP

  == domain 2  score: 231.7 bits;  conditional E-value: 9.8e-73
  U5_2-snRNA_bdg    1 kegvwdlvnestkertakaflkvseeeiekfenrirqillssgsttftkiaakwntalialltyfreavvsteelldvlvkaetkiqtrvklg 93  
                      +egvwdl+ne+tk+rtakaflkvseeei++fe+ri+ il+++gs+tftkiaakwntali+l+tyfrea+vs+e+lldvlvkaet+iq+rvklg
      CCD23994.1 1283 DEGVWDLINEATKQRTAKAFLKVSEEEITNFESRINGILMAAGSSTFTKIAAKWNTALISLFTYFREATVSSERLLDVLVKAETRIQNRVKLG 1375
                      599****************************************************************************************** PP

  U5_2-snRNA_bdg   94 lnskmpsrfPpavfytPkelGGlGmlsaghvliPasdlkys 134 
                      lnskmp+rfPpavfytPkelGGlGmlsa+h+liPasdl+ys
      CCD23994.1 1376 LNSKMPTRFPPAVFYTPKELGGLGMLSASHILIPASDLNYS 1416
                      ****************************************8 PP

>> PROCT  PROCT (NUC072) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.0     3e-51   6.8e-48       1     122 [.    2290    2411 ..    2290    2412 .. 0.98

  Alignments for each domain:
  == domain 1  score: 161.7 bits;  conditional E-value: 3e-51
       PROCT    1 ivltvsftpgsvslsayklteeGyewgkknkdlasenpegfepsfsekvqllLsdrilGfflvPeegvWnysfmgakfsekmkyelkldiPkeFyde 97  
                  i l+v+  pgs+slsay+l++eGyew+k+n+d++se pegfep+fs+++qllLsdri G+flvPe++vWn++fmg +f+++ +yelkldiP++Fy+e
  CCD23994.1 2290 IDLSVCSVPGSISLSAYNLNDEGYEWAKENRDVTSEIPEGFEPTFSSQAQLLLSDRIIGNFLVPESNVWNFAFMGPSFNKEISYELKLDIPLDFYNE 2386
                  67899******************************************************************************************** PP

       PROCT   98 lHRpthFlqfaeleeeeeleadqed 122 
                  +HR+thFlqf+el+ +eelea+q+d
  CCD23994.1 2387 VHRTTHFLQFNELQGDEELEAEQQD 2411
                  *************9999****9997 PP

>> RRM_4  RNA recognition motif of the spliceosomal PrP8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.1   0.9   1.8e-48     4e-45       1      91 [.    1060    1150 ..    1060    1151 .. 0.99

  Alignments for each domain:
  == domain 1  score: 152.1 bits;  conditional E-value: 1.8e-48
       RRM_4    1 ekidltllnrllrlivdknladyitaknnvvltykdmshvnsyGlirGlqfssfvvqyyglvldllllGleraselaGpaekpneflqfkd 91  
                  ekid+tllnrllrl++d+n+ady+taknnv l++kdmshvn+yGl+rGlqf+sf++qyyg+v+dll+lG erase+ Gp ++pn+f+qfk+
  CCD23994.1 1060 EKIDFTLLNRLLRLVMDQNIADYMTAKNNVILNFKDMSHVNKYGLLRGLQFASFIYQYYGFVIDLLILGPERASEMVGPVDNPNDFMQFKS 1150
                  89***************************************************************************************86 PP

>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.6     8e+03      90     115 ..     506     530 ..     506     532 .. 0.89
   2 !   17.4   0.0   1.5e-06    0.0033       9     112 ..    2187    2281 ..    2179    2285 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.6
                 EEEESSSS-SS--HHHHHHHHHHHHH CS
         JAB  90 WYhshpditvwlsevdvrtqalyqrm 115
                 WY  hpd   ++ +v +++q+l++++
  CCD23994.1 506 WYLQHPDE-KYPVKVRISYQKLLKNY 530
                 *******9.99999999999998875 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1.5e-06
                  EHHHHHHHHHHHHHHHHHTS--EEEEEEEESSSE..EEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHCTTSEEEEEEEESSSS-SS--H CS
         JAB    9 eslvllkildhalrtekeeeevmGlliGelnddt..tveitnvfalpfeetekdvdavsldqeylekksellkklrgrervvGWYhshpditvwlse 103 
                   ++ l +++++ +   k   +++G+l G    d+  + e+ +++ +p+ +++  v+  +  ++   +++ +l++    ++++GW+h++ +   ++s+
  CCD23994.1 2187 PKNLLTNFVQISDV--KI--QIAGVLFGASPVDHpnIKEVKTIVLIPQLGSSRGVNMSAAPNS---QSHPYLEN----LELLGWIHTQTNEIKFMSA 2272
                  55555666665443..44..67********99999999****************988888777...55556655....6***********99***** PP

                  HHHHHHHHH CS
         JAB  104 vdvrtqaly 112 
                  + v t+ ++
  CCD23994.1 2273 NEVMTHTQL 2281
                  ******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.10u 0.31s 00:00:01.41 Elapsed: 00:00:00.47
# Mc/sec: 15560.91
//
Query:       CCD23995.1  [L=649]
Description: hypothetical protein NDAI_0C03350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-38  131.2   0.0    6.1e-38  130.0   0.0    1.6  1  ANAPC8    Anaphase promoting complex subunit 8 / Cdc23
      1e-23   81.5  18.5    1.2e-05   25.2   0.0    8.6  8  TPR_8     Tetratricopeptide repeat
      3e-22   77.5  16.1    1.1e-05   25.1   0.0    8.1  9  TPR_1     Tetratricopeptide repeat
    1.1e-21   75.1  15.0    0.00086   19.2   0.0    9.3  9  TPR_2     Tetratricopeptide repeat
    1.4e-15   56.6   0.1    0.00043   20.9   0.0    7.7  7  TPR_14    Tetratricopeptide repeat
      5e-09   35.7   5.8    5.6e-09   35.6   0.1    3.7  4  TPR_11    TPR repeat
    5.3e-08   33.4   0.1    1.2e-05   25.8   0.0    4.3  5  TPR_16    Tetratricopeptide repeat
    1.8e-07   30.7   1.2       0.53   10.4   0.0    5.2  4  TPR_7     Tetratricopeptide repeat
    1.2e-06   27.8   0.0    3.7e-05   22.9   0.0    2.2  2  ChAPs     ChAPs (Chs5p-Arf1p-binding proteins)
    2.3e-06   27.7   0.0       0.65   10.2   0.0    3.8  4  TPR_9     Tetratricopeptide repeat
    2.9e-06   27.4  19.4      0.012   15.8   0.2    5.4  5  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
    3.6e-06   27.0   8.5     0.0015   18.8   0.0    6.7  6  TPR_17    Tetratricopeptide repeat
    2.5e-05   24.7   2.3       0.48   11.0   0.0    4.5  3  TPR_19    Tetratricopeptide repeat
    4.6e-05   23.6   9.9      0.069   13.5   0.1    5.3  5  TPR_12    Tetratricopeptide repeat
    8.7e-05   21.9   0.0      0.018   14.3   0.0    3.0  2  TPR_15    Tetratricopeptide repeat
    0.00088   19.0   1.3     0.0055   16.4   1.1    2.5  2  RPN7      26S proteasome subunit RPN7
     0.0075   15.3   0.0      0.012   14.6   0.0    1.2  1  DUF4784   Domain of unknown function (DUF4784)
  ------ inclusion threshold ------
      0.013   16.0   0.0      0.054   13.9   0.0    1.9  1  BTAD      Bacterial transcriptional activator domain
      0.054   14.2  11.3         75    4.3   0.0    8.1  9  TPR_6     Tetratricopeptide repeat
      0.097   12.6   0.1        4.4    7.3   0.1    3.4  3  TPR_10    Tetratricopeptide repeat
       0.13   12.7   0.0       0.33   11.5   0.0    1.6  1  ABC_tran  ABC transporter
       0.15   12.5   4.8       0.37   11.2   1.0    2.8  2  DUF1765   Protein of unknown function (DUF1765)


Domain annotation for each model (and alignments):
>> ANAPC8  Anaphase promoting complex subunit 8 / Cdc23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.0   0.0   7.5e-41   6.1e-38       2     136 ..      15     165 ..      14     168 .. 0.89

  Alignments for each domain:
  == domain 1  score: 130.0 bits;  conditional E-value: 7.5e-41
                 HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTSS-----------------------.........................HHHHHHHHHTHHHHHHHHH CS
      ANAPC8   2 lraeLreavvklsercLyqsakWaaElLngleessaeedessteseseasespsr..................aftankdpeeaaleakeldkYllAks 82 
                 ++ +Lr+++++ls+++Ly+sakW++E+L g+++ s   +++   + + ++esp r                  +++   dp+ + ++ +e+d YllA s
  CCD23995.1  15 IKINLRRSASDLSHWKLYKSAKWSSEALIGMCDISPFLSNKADPV-NITYESPLRnrtgmgrlgndgktnnngKMAMDYDPR-YGMNDDEYDLYLLAVS 111
                 799********************************9888888555.45566666679********99988886666666654.589************* PP

                 HHHTT-HHHHHHHTTT--SHHHHHHHHHHHHHHHHHHC---------------S CS
      ANAPC8  83 lFDckEfdrcaavlkdelsqkslFLalYakylagekrkeEesemvlgpqdkgnv 136
                 lFDckEfdrc+++lkd +++++ FL+lY+k+++++k+++E++e+vl+  +++n+
  CCD23995.1 112 LFDCKEFDRCCYFLKDVKHPCLKFLKLYSKFISWDKKNQESVESVLTVGKSKNI 165
                 ***********************************************9999875 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   9.1e-05     0.074       3      29 ..     240     266 ..     239     266 .. 0.95
   2 ?   -0.8   0.0       2.9   2.4e+03      17      32 ..     368     383 ..     367     384 .. 0.83
   3 !   16.5   0.0   8.7e-06    0.0071       2      34 .]     421     453 ..     420     453 .. 0.94
   4 !   25.2   0.0   1.4e-08   1.2e-05       2      34 .]     455     487 ..     454     487 .. 0.96
   5 !    7.8   0.1    0.0052       4.2       2      32 ..     489     519 ..     488     519 .. 0.95
   6 !   13.8   0.1   6.2e-05      0.05       2      28 ..     523     549 ..     523     551 .. 0.95
   7 !    9.7   0.0    0.0013       1.1       4      32 ..     562     590 ..     560     592 .. 0.93
   8 ?   -0.7   0.4       2.8   2.3e+03       4      24 ..     604     624 ..     601     628 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.1e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 +yy++g ++++ g++ +A++++ k l+
  CCD23995.1 240 LYYLKGVLLKQEGNKSSAMSSFLKSLS 266
                 6***********************986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHHHHH CS
       TPR_8  17 yeeAkeyyekaleldp 32 
                 y +++  +e+ ++ldp
  CCD23995.1 368 YLSSEDLFEQIVKLDP 383
                 5677889********9 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 8.7e-06
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 e ++ +++ y+  +++e+++ y+++al+l++++
  CCD23995.1 421 ETCCIIANYYSARQEHEKSIMYFRRALTLNKSC 453
                 7899*************************9975 PP

  == domain 4  score: 25.2 bits;  conditional E-value: 1.4e-08
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +a+ ++g+   +l++ ++A+e+y++a++++p++
  CCD23995.1 455 SAWTLMGHEFVELKNSHAAIECYRRAVDINPKD 487
                 69*****************************96 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0052
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldp 32 
                 +a+y lg++y+ l+ +  +  y++ka++l+p
  CCD23995.1 489 KAWYGLGQAYEVLEMHLYSLFYFQKACSLQP 519
                 79**************************998 PP

  == domain 6  score: 13.8 bits;  conditional E-value: 6.2e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekal 28 
                 ++++ lg +y+k g +  A +++e+al
  CCD23995.1 523 RMWQALGTCYIKIGYKSDALKCFERAL 549
                 68************************9 PP

  == domain 7  score: 9.7 bits;  conditional E-value: 0.0013
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldp 32 
                 +++++ i+++l+++e  k  + +++el++
  CCD23995.1 562 LFKIAEICEQLKQMERCKLHMIRCVELEK 590
                 799***********************987 PP

  == domain 8  score: -0.7 bits;  conditional E-value: 2.8
                 HHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyy 24 
                  ++l++  lk  +yeeA +y 
  CCD23995.1 604 RLWLAKYELKHDNYEEAYKYA 624
                 55666666777899**99986 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.5   1.2e+03       4      19 ..     105     120 ..     104     121 .. 0.91
   2 !    6.8   0.0    0.0075       6.1       3      31 ..     240     268 ..     238     271 .. 0.91
   3 ?   -0.8   0.1       1.9   1.6e+03      16      32 ..     367     383 ..     359     384 .. 0.77
   4 !   16.9   0.0     5e-06    0.0041       2      33 ..     421     452 ..     420     453 .. 0.92
   5 !   25.1   0.0   1.3e-08   1.1e-05       3      34 .]     456     487 ..     454     487 .. 0.96
   6 !   16.9   0.3   5.1e-06    0.0042       2      32 ..     489     519 ..     488     520 .. 0.97
   7 !   14.0   0.1   4.1e-05     0.033       4      30 ..     525     551 ..     523     554 .. 0.91
   8 ?   -2.3   0.0       5.8   4.7e+03       4      19 ..     562     577 ..     560     581 .. 0.83
   9 ?   -0.2   0.8       1.3   1.1e+03       8      23 ..     608     623 ..     601     626 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.5
                 HHHHHHHHHHTT-HHH CS
       TPR_1   4 lynlGnayfklgkyde 19 
                 ly l++ +f  +++d 
  CCD23995.1 105 LYLLAVSLFDCKEFDR 120
                 799**********995 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0075
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALeln 31 
                  +y +G+++ + g+   A   + k L+++
  CCD23995.1 240 LYYLKGVLLKQEGNKSSAMSSFLKSLSHY 268
                 69**********************99875 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.9
                 -HHHHHHHHHHHHHHST CS
       TPR_1  16 kydeAleyyekALelnP 32 
                 +y   ++ +e+ ++l+P
  CCD23995.1 367 DYLSSEDLFEQIVKLDP 383
                 66667899********9 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 5e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                 ++++ ++n y   +++++ + y+++AL+ln +
  CCD23995.1 421 ETCCIIANYYSARQEHEKSIMYFRRALTLNKS 452
                 678999************************76 PP

  == domain 5  score: 25.1 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPnn 34 
                 a+  +G+ + +l++   A+e+y++A+ +nP++
  CCD23995.1 456 AWTLMGHEFVELKNSHAAIECYRRAVDINPKD 487
                 9*****************************86 PP

  == domain 6  score: 16.9 bits;  conditional E-value: 5.1e-06
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnP 32 
                 ka+y+lG+ay  l+++   l y++kA +l+P
  CCD23995.1 489 KAWYGLGQAYEVLEMHLYSLFYFQKACSLQP 519
                 8***************************998 PP

  == domain 7  score: 14.0 bits;  conditional E-value: 4.1e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALel 30 
                 +  lG +y k g   +Al+++e+AL++
  CCD23995.1 525 WQALGTCYIKIGYKSDALKCFERALQH 551
                 7779*********************97 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 5.8
                 HHHHHHHHHHTT-HHH CS
       TPR_1   4 lynlGnayfklgkyde 19 
                 l+ ++ ++ +l++ + 
  CCD23995.1 562 LFKIAEICEQLKQMER 577
                 677999******9986 PP

  == domain 9  score: -0.2 bits;  conditional E-value: 1.3
                 HHHHHHTT-HHHHHHH CS
       TPR_1   8 GnayfklgkydeAley 23 
                 +   +k  +y+eA +y
  CCD23995.1 608 AKYELKHDNYEEAYKY 623
                 555577889****998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1         1   8.3e+02       4      21 ..     105     122 ..     103     127 .. 0.86
   2 !    7.4   0.0    0.0065       5.3       3      31 ..     240     268 ..     238     271 .. 0.92
   3 ?    0.7   0.0      0.95   7.7e+02      17      32 ..     368     383 ..     363     385 .. 0.86
   4 !    9.0   0.0    0.0019       1.6       2      32 ..     421     451 ..     420     453 .. 0.91
   5 !   15.3   0.0   1.9e-05     0.015       3      34 .]     456     487 ..     454     487 .. 0.93
   6 !   14.9   0.3   2.6e-05     0.021       2      32 ..     489     519 ..     488     521 .. 0.95
   7 !   19.2   0.0   1.1e-06   0.00086       4      31 ..     525     552 ..     523     555 .. 0.92
   8 ?    2.2   0.0      0.31   2.5e+02       3      31 ..     561     589 ..     560     591 .. 0.90
   9 ?    5.3   0.7      0.03        24       5      25 ..     605     625 ..     601     628 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1
       TPR_2   4 lynlGlayyklgdyeeAl 21 
                 ly l+ +++  ++++++ 
  CCD23995.1 105 LYLLAVSLFDCKEFDRCC 122
                 89************9876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0065
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 ++y  G ++ + g+   A   f k+l+++
  CCD23995.1 240 LYYLKGVLLKQEGNKSSAMSSFLKSLSHY 268
                 79***********************9876 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.95
       TPR_2  17 yeeAleafekAleldP 32 
                 y   +++fe+ ++ldP
  CCD23995.1 368 YLSSEDLFEQIVKLDP 383
                 5567899********9 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0019
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                 e ++ +++ y +++++e+ + +f++Al l+ 
  CCD23995.1 421 ETCCIIANYYSARQEHEKSIMYFRRALTLNK 451
                 678889***********************97 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 1.9e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPnn 34 
                 a+  +G    +l++   A+e++++A+ ++P++
  CCD23995.1 456 AWTLMGHEFVELKNSHAAIECYRRAVDINPKD 487
                 7889999999********************86 PP

  == domain 6  score: 14.9 bits;  conditional E-value: 2.6e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldP 32 
                 +a+y lG+ay+ l  +   l +f+kA +l P
  CCD23995.1 489 KAWYGLGQAYEVLEMHLYSLFYFQKACSLQP 519
                 79***************************99 PP

  == domain 7  score: 19.2 bits;  conditional E-value: 1.1e-06
       TPR_2   4 lynlGlayyklgdyeeAleafekAleld 31 
                 + +lG +y+k g   +Al++fe+Al++ 
  CCD23995.1 525 WQALGTCYIKIGYKSDALKCFERALQHS 552
                 889**********************986 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.31
       TPR_2   3 alynlGlayyklgdyeeAleafekAleld 31 
                 +l+ +++++++l++ e+++ ++ +++el+
  CCD23995.1 561 LLFKIAEICEQLKQMERCKLHMIRCVELE 589
                 5899**************99999999886 PP

  == domain 9  score: 5.3 bits;  conditional E-value: 0.03
       TPR_2   5 ynlGlayyklgdyeeAleafe 25 
                  +l++  +k ++yeeA ++  
  CCD23995.1 605 LWLAKYELKHDNYEEAYKYAT 625
                 6899999**********9975 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.83   6.8e+02       4      43 ..     241     280 ..     238     281 .. 0.85
   2 ?    2.0   0.0      0.62     5e+02      15      35 ..     332     352 ..     326     361 .. 0.88
   3 !   12.6   0.0   0.00025       0.2       8      42 ..     427     461 ..     425     462 .. 0.94
   4 !   20.9   0.0   5.3e-07   0.00043       3      43 ..     456     496 ..     455     497 .. 0.95
   5 ?    4.5   0.0     0.093        76      23      43 ..     510     530 ..     507     531 .. 0.90
   6 ?    7.4   0.0     0.011       9.2       2      32 ..     523     553 ..     522     568 .. 0.83
   7 ?    3.3   0.2      0.24     2e+02       2      27 ..     602     627 ..     601     639 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.83
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +++ + +l + G+   A+  + + l+++  +++ w++l +
  CCD23995.1 241 YYLKGVLLKQEGNKSSAMSSFLKSLSHYSFNWTCWIELTE 280
                 45557778899*****************999999999976 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.62
      TPR_14  15 GdpdeAiallrralalaPdda 35 
                 G+ de ++l + +la +P++a
  CCD23995.1 332 GNMDELMDLIETLLAIFPNFA 352
                 899***************987 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 0.00025
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeawllla 42 
                 a ++ a+++++++i ++rral l+ +   aw+l++
  CCD23995.1 427 ANYYSARQEHEKSIMYFRRALTLNKSCTSAWTLMG 461
                 889****************************9986 PP

  == domain 4  score: 20.9 bits;  conditional E-value: 5.3e-07
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 a+ ++++ + +l +  +Ai+++rra++ +P+d  aw+ l+q
  CCD23995.1 456 AWTLMGHEFVELKNSHAAIECYRRAVDINPKDFKAWYGLGQ 496
                 788999999******************************98 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.093
      TPR_14  23 llrralalaPddaeawlllaq 43 
                 ++++a++l+P d++ w +l+ 
  CCD23995.1 510 YFQKACSLQPLDRRMWQALGT 530
                 89****************985 PP

  == domain 6  score: 7.4 bits;  conditional E-value: 0.011
      TPR_14   2 eallalaeallalGdpdeAiallrralalaP 32 
                 ++++al+  +   G   +A+++++ral++  
  CCD23995.1 523 RMWQALGTCYIKIGYKSDALKCFERALQHSG 553
                 6899************************876 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 0.24
      TPR_14   2 eallalaeallalGdpdeAiallrra 27 
                 +a+l la+++l  ++++eA +++ ++
  CCD23995.1 602 KARLWLAKYELKHDNYEEAYKYATAV 627
                 6899*****************98765 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.31   2.5e+02       4      35 ..     430     461 ..     427     462 .. 0.81
   2 !   35.6   0.1   6.8e-12   5.6e-09       1      39 [.     461     499 ..     461     501 .. 0.95
   3 ?   -2.2   0.0       4.3   3.5e+03      18      36 ..     512     530 ..     511     536 .. 0.71
   4 ?   -1.2   0.0         2   1.6e+03      12      22 ..     540     550 ..     529     551 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.31
      TPR_11   4 yyeqGkyeeAieaYkkAlkldPdnaeayynLG 35 
                 y ++++ e++i  +++Al l+ +  +a+  +G
  CCD23995.1 430 YSARQEHEKSIMYFRRALTLNKSCTSAWTLMG 461
                 678999**************988666666655 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 6.8e-12
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 G++++e+ +  +Aie+Y++A++++P++  a+y+LG+ay 
  CCD23995.1 461 GHEFVELKNSHAAIECYRRAVDINPKDFKAWYGLGQAYE 499
                 88999999999***************************6 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 4.3
      TPR_11  18 kkAlkldPdnaeayynLGl 36 
                 +kA+ l P + + + +LG 
  CCD23995.1 512 QKACSLQPLDRRMWQALGT 530
                 89****9977666666665 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 2
      TPR_11  12 eAieaYkkAlk 22 
                 +A++++++Al+
  CCD23995.1 540 DALKCFERALQ 550
                 79*******97 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       4.2   3.4e+03      37      64 ..     241     268 ..     238     271 .. 0.78
   2 ?   -2.1   0.0       7.7   6.3e+03      43      61 ..     429     447 ..     426     456 .. 0.57
   3 !   25.8   0.0   1.5e-08   1.2e-05       3      46 ..     460     500 ..     458     502 .. 0.94
   4 ?   -0.3   0.0       2.2   1.8e+03      15      24 ..     540     549 ..     511     554 .. 0.76
   5 ?   -0.0   0.2       1.8   1.5e+03      36      54 ..     603     621 ..     602     633 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 4.2
      TPR_16  37 llllgdaalrqgrlaeAaalyraalraa 64 
                 ++l+g+++ + g+   A   +++ l ++
  CCD23995.1 241 YYLKGVLLKQEGNKSSAMSSFLKSLSHY 268
                 899*********9999996666655665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 7.7
      TPR_16  43 aalrqgrlaeAaalyraal 61 
                  + +++++++ + ++r+al
  CCD23995.1 429 YYSARQEHEKSIMYFRRAL 447
                 4445555555555555555 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 1.5e-08
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalr 46 
                 ++++++++++  +A++ +++a++ +   P +  A+++lg+a+ +
  CCD23995.1 460 MGHEFVELKNSHAAIECYRRAVDIN---PKDFKAWYGLGQAYEV 500
                 799**********************...*************986 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 2.2
      TPR_16  15 dAaaaleaal 24 
                 dA++ +e+al
  CCD23995.1 540 DALKCFERAL 549
                 7888888887 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 1.8
      TPR_16  36 AllllgdaalrqgrlaeAa 54 
                 A+l+l+   l++ +++eA 
  CCD23995.1 603 ARLWLAKYELKHDNYEEAY 621
                 5666666666666666663 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       5.2   4.2e+03      12      28 ..     331     347 ..     325     348 .. 0.84
   2 !   10.4   0.0   0.00069      0.56       1      30 [.     422     451 ..     422     455 .. 0.87
   3 ?    3.8   0.0     0.087        71      10      29 ..     465     482 ..     456     499 .. 0.78
   4 !   10.4   0.0   0.00065      0.53       4      26 ..     527     549 ..     525     557 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 5.2
       TPR_7  12 lGdyeeAielyeqsLal 28 
                  G+++e+ +l e +La+
  CCD23995.1 331 KGNMDELMDLIETLLAI 347
                 699*******9998875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00069
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltk 30 
                 +++ +a+ ys+++++e+ i +++++L l k
  CCD23995.1 422 TCCIIANYYSARQEHEKSIMYFRRALTLNK 451
                 6899********************776654 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.087
       TPR_7  10 srlGdyeeAielyeqsLalt 29 
                 ++l +   Aie+y++  a++
  CCD23995.1 465 VELKNSHAAIECYRR--AVD 482
                 56667789*******..665 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00065
       TPR_7   4 nLarlysrlGdyeeAielyeqsL 26 
                 +L+ +y + G+ ++A++++e++L
  CCD23995.1 527 ALGTCYIKIGYKSDALKCFERAL 549
                 8********************55 PP

>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.5e-08   3.7e-05     175     281 ..     395     501 ..     390     509 .. 0.84
   2 ?    2.6   0.0     0.066        54     258     290 ..     512     544 ..     503     634 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4.5e-08
                 HHHHHHHHT-HHHHHHHHHHHHTT-GGGHHHHHHHHHHTT-HHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHSS--HHHHHHHHHHHHH-TT-HHHHHH CS
       ChAPs 175 llklvrltkrydralellekLkeeepevvillarvllladeEvdavkllneeleeeekdaelLllqaefllskkkeelAlevakravksaPsefktWal 273
                 +l +++  +++   +++++++ +  pe   ++a  + + +e  +++    ++l+ +++ ++  +l  +  ++ k+++ A+e+ +rav++ P +fk W+ 
  CCD23995.1 395 ILYVMQRHSKLAYLAQFVSQVDKFRPETCCIIANYYSARQEHEKSIMYFRRALTLNKSCTSAWTLMGHEFVELKNSHAAIECYRRAVDINPKDFKAWYG 493
                 56667777777778889999999******************************8887775555554444467778899********************* PP

                 HHHHHHHT CS
       ChAPs 274 LvkvYikl 281
                 L + Y  l
  CCD23995.1 494 LGQAYEVL 501
                 ***99655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.066
                 HHHHHH-TT-HHHHHHHHHHHHHTT-HHHHHHH CS
       ChAPs 258 kravksaPsefktWalLvkvYikledienALlt 290
                 ++a ++ P + + W  L  +Yik++  ++AL  
  CCD23995.1 512 QKACSLQPLDRRMWQALGTCYIKIGYKSDALKC 544
                 7899999*****************999999975 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.066        54      11      62 ..     334     385 ..     331     393 .. 0.89
   2 !    8.4   0.0     0.003       2.4       5      62 ..     430     487 ..     426     505 .. 0.73
   3 !    9.4   0.0    0.0014       1.1      10      60 ..     469     519 ..     464     523 .. 0.88
   4 !   10.2   0.0    0.0008      0.65      23      60 ..     516     553 ..     496     575 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.066
       TPR_9  11 weralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                 +++++  +e ll+++P+ ++     +l++++  ++    + +e+ + l+p +
  CCD23995.1 334 MDELMDLIETLLAIFPNFAYIKAQNALINYHYMDYLSSEDLFEQIVKLDPYR 385
                 6788999*****************************9999999999999954 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.003
       TPR_9   5 aireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapda 62 
                 +  ++++e+ + +  r l l+    + +   G   ++l + +aA+++  ++++++p++
  CCD23995.1 430 YSARQEHEKSIMYFRRALTLNKSCTSAWTLMGHEFVELKNSHAAIECYRRAVDINPKD 487
                 6677777777777778888888888888888888888888888888888888877754 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0014
       TPR_9  10 dweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 ++ +a++++ r + ++P+d   ++  G++++ l+     l+ ++ + +l+p
  CCD23995.1 469 NSHAAIECYRRAVDINPKDFKAWYGLGQAYEVLEMHLYSLFYFQKACSLQP 519
                 6779****************************9999999999999888887 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.0008
       TPR_9  23 llaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                  l+P d + +   G ++ + G  s Al+++e++l++++
  CCD23995.1 516 SLQPLDRRMWQALGTCYIKIGYKSDALKCFERALQHSG 553
                 578889999***************************98 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   1.5e-05     0.012      20      62 ..      99     139 ..      91     145 .. 0.86
   2 ?   -1.0   0.0       2.7   2.2e+03      11      44 ..     374     407 ..     367     427 .. 0.79
   3 !   10.8   0.1   0.00054      0.44       3      69 ..     434     501 ..     432     507 .. 0.91
   4 ?    3.9   0.6     0.078        63       9      73 ..     508     576 ..     506     585 .. 0.66
   5 ?    6.7   0.9      0.01       8.2      20      54 ..     598     633 ..     589     649 .] 0.70

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.5e-05
                 H--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHH CS
      ANAPC3  20 tespedayllAlclylngqykrAyellrkaklnskslgcrylf 62 
                 +++++d+yllA +l+  ++++r++++l++   ++  l+ + l+
  CCD23995.1  99 NDDEYDLYLLAVSLFDCKEFDRCCYFLKDV--KHPCLKFLKLY 139
                 67899************************9..66666666665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.7
                 HHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHH CS
      ANAPC3  11 laerllaaetespedayllAlclylngqykrAye 44 
                 l+e +++ ++++++d+  ++  ly ++++ +  +
  CCD23995.1 374 LFEQIVKLDPYRLDDLDTYSNILYVMQRHSKLAY 407
                 6777888899999999999998888777665544 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00054
                 T-HHHHHHHHHHHH.HHH--HHHHHHH.HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHT CS
      ANAPC3   3 nnyknAiflaerllaaetespedayll.AlclylngqykrAyellrka.klnskslgcrylfAqcllkL 69 
                 + +++ i+++ r+l + ++s+ +a  l +  + ++++ + A+e +r+a ++n+k+ +++y ++q++  L
  CCD23995.1 434 QEHEKSIMYFRRAL-TLNKSCTSAWTLmGHEFVELKNSHAAIECYRRAvDINPKDFKAWYGLGQAYEVL 501
                 578999********.9999999988887***********************************999766 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.078
                 HHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHH...HHHHHHTT-HH CS
      ANAPC3   9 iflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylf...AqcllkLkkye 73 
                 +f++ ++++ ++ +     +l+ c+ + g    A++ +++a +  ++ ++  +l+   A+ + +Lk++e
  CCD23995.1 508 LFYFQKACSLQPLDRRMWQALGTCYIKIGYKSDALKCFERAlQHSGNIEQDSVLLfkiAEICEQLKQME 576
                 688888885555555555557899999999888888888885555555533333212257888887765 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.01
                 H--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC CS
      ANAPC3  20 tespedayllAlclylngqykrAyellrka.klnsk 54 
                  e  +++++lA+  ++  +y++Ay+++    +   +
  CCD23995.1 598 EETIKARLWLAKYELKHDNYEEAYKYATAVtNGTAQ 633
                 566678889999999999999999988877555444 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1       1.6   1.3e+03      14      29 ..     239     254 ..     237     258 .. 0.82
   2 ?    2.0   0.0      0.42   3.4e+02       2      27 ..     261     286 ..     260     291 .. 0.89
   3 !   18.8   0.0   1.8e-06    0.0015       1      24 [.     476     499 ..     476     504 .. 0.93
   4 ?    1.8   0.0      0.48   3.9e+02       2      27 ..     511     536 ..     510     543 .. 0.85
   5 ?    1.1   0.0      0.79   6.5e+02       1      31 [.     544     577 ..     544     579 .. 0.76
   6 ?   -1.5   0.2       5.3   4.3e+03      15      32 ..     603     620 ..     602     622 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.6
      TPR_17  14 daynnLAelllknGdl 29 
                  +y+++++ll++ G++
  CCD23995.1 239 LLYYLKGVLLKQEGNK 254
                 68********998875 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.42
      TPR_17   2 ylkaleldPnnadaynnLAelllknG 27 
                 +lk+l ++  n+  + +L e+l+++ 
  CCD23995.1 261 FLKSLSHYSFNWTCWIELTECLSRAD 286
                 79****************99999765 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 1.8e-06
      TPR_17   1 lylkaleldPnnadaynnLAelll 24 
                 +y++a++++P++++a++ L+++++
  CCD23995.1 476 CYRRAVDINPKDFKAWYGLGQAYE 499
                 8*********************97 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.48
      TPR_17   2 ylkaleldPnnadaynnLAelllknG 27 
                 ++ka  l P +   ++ L++++ k+G
  CCD23995.1 511 FQKACSLQPLDRRMWQALGTCYIKIG 536
                 89999999999999********9988 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.79
      TPR_17   1 lylkaleld...PnnadaynnLAelllknGdlmt 31 
                 ++++al++      ++++++  Ae+ +++++ ++
  CCD23995.1 544 CFERALQHSgniEQDSVLLFKIAEICEQLKQMER 577
                 7899999983344559999999999988887666 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 5.3
      TPR_17  15 aynnLAelllknGdlmtA 32 
                 a   LA++ lk  ++++A
  CCD23995.1 603 ARLWLAKYELKHDNYEEA 620
                 5678999999*9999998 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00058      0.48       7      35 ..     470     498 ..     464     502 .. 0.90
   2 !    7.7   0.0    0.0062       5.1      13      57 ..     510     554 ..     508     579 .. 0.78
   3 ?    2.0   0.2      0.37     3e+02      26      47 ..     602     623 ..     596     643 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00058
      TPR_19   7 yaeAlalleqalqedpknaearllLAeal 35 
                   +A++ +++a + +pk+  a+++L +a+
  CCD23995.1 470 SHAAIECYRRAVDINPKDFKAWYGLGQAY 498
                 569*************************9 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0062
      TPR_19  13 lleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 ++++a +  p + + + +L  ++++ g   +A ++ ++++++  +
  CCD23995.1 510 YFQKACSLQPLDRRMWQALGTCYIKIGYKSDALKCFERALQHSGN 554
                 567777777778888888888999999999999888888877665 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.37
      TPR_19  26 earllLAeallalgqldeAeal 47 
                  arl+LA+  l+  +++eA + 
  CCD23995.1 602 KARLWLAKYELKHDNYEEAYKY 623
                 689***************9765 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0         2   1.6e+03      42      75 ..     235     268 ..     229     269 .. 0.83
   2 ?   -2.0   0.0       5.5   4.5e+03      18      46 ..     367     390 ..     356     404 .. 0.59
   3 !   13.5   0.1   8.4e-05     0.069       9      75 ..     426     484 ..     422     486 .. 0.87
   4 ?    6.1   0.0     0.016        13      46      73 ..     523     550 ..     488     552 .. 0.86
   5 ?    5.6   0.2     0.023        19       7      67 ..     563     623 ..     557     630 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2
      TPR_12  42 pltattlrnLgrlyralgryeeAlelleealaia 75 
                 ++++  ++  g l+ + g+   A + + ++l  +
  CCD23995.1 235 LGLSLLYYLKGVLLKQEGNKSSAMSSFLKSLSHY 268
                 5667788899999999999999999999999766 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.5
      TPR_12  18 rydeAlellekaleiarrllGpdhpltat 46 
                 +y  +++l+e+ + +      p++++ + 
  CCD23995.1 367 DYLSSEDLFEQIVKLD-----PYRLDDLD 390
                 5555566666655554.....55555555 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 8.4e-05
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 +a+ + +++++++++ ++++al + + +  +++     +   +g  + +l++  +A+e +++a++i 
  CCD23995.1 426 IANYYSARQEHEKSIMYFRRALTLNK-S--CTS-----AWTLMGHEFVELKNSHAAIECYRRAVDIN 484
                 589999*******************3.3..566.....5569999999***************9985 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.016
      TPR_12  46 ttlrnLgrlyralgryeeAlelleeala 73 
                 +  ++Lg++y + g   +Al+ +e+al+
  CCD23995.1 523 RMWQALGTCYIKIGYKSDALKCFERALQ 550
                 5678999999999999********9997 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.023
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlel 67 
                  ++a+++ +l++++ +  +  +++e+ ++  G  +++t+ ++  L+ + ++ ++yeeA ++
  CCD23995.1 563 FKIAEICEQLKQMERCKLHMIRCVELEKSEDGFANEETIKARLWLAKYELKHDNYEEAYKY 623
                 479************************99999999**********************9666 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.036        29     146     177 ..     420     451 ..     384     460 .. 0.69
   2 !   14.3   0.0   2.2e-05     0.018     149     265 ..     457     576 ..     451     581 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.036
      TPR_15 146 aafllaraelyrqegqtdaAlrdyreAlalap 177
                 +    + a++y+++ ++++++  +r+Al+l+ 
  CCD23995.1 420 PETCCIIANYYSARQEHEKSIMYFRRALTLNK 451
                 44556899********************9976 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 2.2e-05
      TPR_15 149 llaraelyrqegqtdaAlrdyreAlalapdsselraallWll..iDlgrraeLrellkawkara...esdasLwgplaaAlllLgrpkkALeylrkqak 242
                 + +++    +  ++ aA+++yr+A++ +p++ ++  +l  ++  +++       + l  ++++      d+++w++l++ + ++g ++ AL+ +++ ++
  CCD23995.1 457 WTLMGHEFVELKNSHAAIECYRRAVDINPKDFKAWYGLGQAYevLEMHL-----YSLFYFQKACslqPLDRRMWQALGTCYIKIGYKSDALKCFERALQ 550
                 6666666667788999*************97766555433320022222.....223344444477789**************************9766 PP

      TPR_15 243 en...rkdplwllaYADaleqagrad 265
                      ++d   l++ A++ eq  + +
  CCD23995.1 551 HSgniEQDSVLLFKIAEICEQLKQME 576
                 43223689999999999999877766 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.5   2.8e+03     115     147 ..     240     272 ..     202     277 .. 0.60
   2 !   16.4   1.1   6.7e-06    0.0055      36     134 ..     522     622 ..     520     638 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHTT-HHHHHHHHCTS-GGGT.TT CS
        RPN7 115 lkvyeGlallairkfkeAaellldilstftske 147
                 l   +G++l + ++ ++A + +l++ls ++ ++
  CCD23995.1 240 LYYLKGVLLKQEGNKSSAMSSFLKSLSHYSFNW 272
                 555677777777888888888888888886566 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 6.7e-06
                 HHHHHHHHHHHHHCT-HHHHHHHHHTCCCC--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHCSSS---......HHHHHHHHHHHHHHHHHTT-H CS
        RPN7  36 rrakldlaehYlkigdleeAlkaysrireyctslkhkidmllnlirvaiffndwdlvskylekakellekggd.....werknrlkvyeGlallairkf 129
                 rr +++l+  Y+kig ++ Alk+++r+++++ + ++   +l+++ +++  +++++  + ++ ++ el ++ +d     ++ k+rl  ++  ++l+  ++
  CCD23995.1 522 RRMWQALGTCYIKIGYKSDALKCFERALQHSGNIEQDSVLLFKIAEICEQLKQMERCKLHMIRCVELEKS-EDgfaneETIKARLWLAK--YELKHDNY 617
                 78899***********************************************************999888.455776666666665555..67777777 PP

                 HHHHH CS
        RPN7 130 keAae 134
                 +eA +
  CCD23995.1 618 EEAYK 622
                 77765 PP

>> DUF4784  Domain of unknown function (DUF4784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-05     0.012     142     214 ..     143     217 ..     137     220 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
     DUF4784 142 vvrlaede.dfssvvnlpgsngl.cGiskkdgkrsaalyDltmrywkdlglknvltlviatsnsvaavvqedkrl 214
                 ++++++++  ++sv  + +s+++  Gi   +g +s + yD+t++  k  + + v+ ++ ++++s+++++qe +r+
  CCD23995.1 143 ISWDKKNQeSVESVLTVGKSKNIpTGINDPEGASSSTAYDFTTQAKKIKTSRGVVNMGDGHQSSISLILQELNRY 217
                 56777888799*********99968*******************************************9998775 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.6e-05     0.054      84     124 ..     510     550 ..     494     553 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.6e-05
                 HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
        BTAD  84 elealvaehPlrErlhrqlmrAlarsGrqaeALevYerlrr 124
                 + +++++++Pl+ r++++l +++ + G +++AL+ +er+ +
  CCD23995.1 510 YFQKACSLQPLDRRMWQALGTCYIKIGYKSDALKCFERALQ 550
                 56899********************************9865 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       6.9   5.6e+03       3      24 ..     105     126 ..     105     129 .. 0.76
   2 ?   -0.8   0.0       3.8   3.1e+03       3      23 ..     241     261 ..     234     268 .. 0.75
   3 ?    0.0   0.0       2.1   1.7e+03       4      32 ..     322     350 ..     321     350 .. 0.87
   4 ?    0.9   0.0       1.1     9e+02      10      27 ..     430     447 ..     425     450 .. 0.76
   5 ?    4.3   0.0     0.092        75      12      32 ..     466     486 ..     457     487 .. 0.87
   6 ?   -0.7   0.2       3.5   2.9e+03       2      12 ..     490     500 ..     489     516 .. 0.85
   7 ?    2.8   0.0      0.27   2.2e+02       6      28 ..     528     550 ..     527     552 .. 0.86
   8 ?    0.5   0.0       1.5   1.2e+03       3      20 ..     562     579 ..     560     587 .. 0.87
   9 ?    1.5   0.3      0.74     6e+02       2      26 ..     603     627 ..     602     629 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 6.9
                 HHHHHHHHHH.HHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrk.lgdtdkAleale 24 
                 ly+la s++    + d+ +  l+
  CCD23995.1 105 LYLLAVSLFDcK-EFDRCCYFLK 126
                 899****99877.8877776665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 3.8
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAleal 23 
                 +y+ + ++++ g+++ A+  +
  CCD23995.1 241 YYLKGVLLKQEGNKSSAMSSF 261
                 577777777768999998866 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 2.1
                 HHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   4 yklalsyrklgdtdkAlealerlikeYPd 32 
                 +kl ls+   g+ d+ +++ e l+  +P+
  CCD23995.1 322 FKLTLSQDYKGNMDELMDLIETLLAIFPN 350
                 77778888878999999***********8 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealerli 27 
                 y + ++++k++ +++r +
  CCD23995.1 430 YSARQEHEKSIMYFRRAL 447
                 444559*********987 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.092
                 HHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  12 klgdtdkAlealerlikeYPd 32 
                 +l+++ +A+e ++r ++  P+
  CCD23995.1 466 ELKNSHAAIECYRRAVDINPK 486
                 678999***********9997 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 3.5
                 HHHHHHHHHHH CS
       TPR_6   2 Alyklalsyrk 12 
                 A y l+++y+ 
  CCD23995.1 490 AWYGLGQAYEV 500
                 89******985 PP

  == domain 7  score: 2.8 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlik 28 
                 l+ +y+k g +++Al+ +er ++
  CCD23995.1 528 LGTCYIKIGYKSDALKCFERALQ 550
                 799****877779******9986 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAl 20 
                 l+k+a+  ++l++ ++ +
  CCD23995.1 562 LFKIAEICEQLKQMERCK 579
                 8*********99999875 PP

  == domain 9  score: 1.5 bits;  conditional E-value: 0.74
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerl 26 
                 A ++la+  +k +++++A ++   +
  CCD23995.1 603 ARLWLAKYELKHDNYEEAYKYATAV 627
                 8899999999989*****9998776 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1    0.0054       4.4       8      31 ..     426     449 ..     425     452 .. 0.92
   2 ?    0.1   0.0      0.98     8e+02      27      37 ..     472     482 ..     469     486 .. 0.80
   3 ?   -1.3   0.0       2.7   2.2e+03      18      30 ..     538     550 ..     528     550 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0054
      TPR_10   8 LanalrqrgrydeAealleealai 31 
                 +an++++r++++++  ++++al +
  CCD23995.1 426 IANYYSARQEHEKSIMYFRRALTL 449
                 69********************87 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.98
      TPR_10  27 ealairrrllG 37 
                  a++++rr++ 
  CCD23995.1 472 AAIECYRRAVD 482
                 69999999975 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.7
      TPR_10  18 ydeAealleeala 30 
                   +A++ +e+al+
  CCD23995.1 538 KSDALKCFERALQ 550
                 6789999**9996 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00041      0.33      56     126 ..     547     644 ..     525     647 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00041
                 HCCHCEEEE-SS.--S-TTSBHHHH..........................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxx.xxxxxxxxxxxx..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  56 slrkeigvlpqe.pqlfpeltvren..........................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkk 126
                 ++ +++g ++q+   lf+  ++ e+                          e++ ++  +l+k++lk+++ + +++ ++ +  G  q v+lar+++++
  CCD23995.1 547 RALQHSGNIEQDsVLLFKIAEICEQlkqmercklhmircveleksedgfanEETIKARLWLAKYELKHDNYEEAYKYATAVTNGTAQEVELARSIARH 644
                 4455556666664444444445555666666666677777776666666557777799****************9999****************9986 PP

>> DUF1765  Protein of unknown function (DUF1765)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.32   2.6e+02      40      71 ..     264     295 ..     238     303 .. 0.76
   2 ?   11.2   1.0   0.00046      0.37      40     105 ..     308     378 ..     281     380 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.32
     DUF1765  40 selpelldwefwlsvikmmlesdnvqsllrtl 71 
                 s +++ ++w+ w++  + + ++d +  ll+ l
  CCD23995.1 264 SLSHYSFNWTCWIELTECLSRADEAFQLLKYL 295
                 356799********999998888887777665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00046
     DUF1765  40 s...elpelldwefwlsvikmml..esdnvqsllrtlsflfniwdlipedeerkkklfldlLlseevfekl 105
                 +   ++++++ ++f+  ++++    + d  + l++tl  +f ++ +i+++++  +   +d+L se++fe++
  CCD23995.1 308 DtqhTVQYNIMLKFFKLTLSQDYkgNMDELMDLIETLLAIFPNFAYIKAQNALINYHYMDYLSSEDLFEQI 378
                 13447788888888854444443378899***************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.62u 0.32s 00:00:00.94 Elapsed: 00:00:00.47
# Mc/sec: 4178.17
//
Query:       CCD23996.1  [L=268]
Description: hypothetical protein NDAI_0C03360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-56  190.2   3.5    1.2e-56  190.2   3.5    2.1  2  THP2           Tho complex subunit THP2
     0.0042   17.4   1.3      0.012   15.9   0.3    2.2  2  IL5            Interleukin 5
  ------ inclusion threshold ------
       0.16   11.3   2.8       0.37   10.1   0.9    2.2  2  NAD_binding_5  Myo-inositol-1-phosphate synthase
       0.31   10.7   3.7       0.25   11.0   0.6    2.2  2  YecM           YecM protein
       0.32   11.3   5.6       0.26   11.6   0.8    2.8  3  DUF3979        Protein of unknown function (DUF3979)
        2.7    8.4   9.3        4.9    7.5   2.0    3.0  3  CpxA_peri      Two-component sensor protein CpxA, periplasmic


Domain annotation for each model (and alignments):
>> THP2  Tho complex subunit THP2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   2.9     0.055   1.6e+02      28     103 ..      19     100 ..       7     114 .. 0.63
   2 !  190.2   3.5   4.2e-60   1.2e-56       1     129 []     117     245 ..     117     245 .. 0.99

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.055
        THP2  28 ivvddekppkelqeilekyeeesedaeelraklek...YldeiKmerakytle.Nkyllkd....klkeltkevnrWrkewdni 103
                    ++++  k++ ++l++++++++  +el+++l++   Y  +  ++r+   l+ Nky  ++    +l ++++e ++++++++ i
  CCD23996.1  19 HLQENYSCIKDIFKTLKQLKNKDATDDELKQNLDNlsiYYRD--LTRSSIDLKyNKYQTREiqlsHLDKISNEAQTFKRKHKTI 100
                 445667777899999999999998888888887763223333..4555555544777665432224556666666666666555 PP

  == domain 2  score: 190.2 bits;  conditional E-value: 4.2e-60
        THP2   1 leyinLlerlsvdLakqveisdeevseivvddekppkelqeilekyeeesedaeelraklekYldeiKmerakytleNkyllkdklkeltkevnrWrke 99 
                 leyinLl+rlsvdL++q+eisd++vs+i+vd ++ppk++q +l+k+ e+++d++el+ ++++Yld+iKm+raky+leNky+l++kl+e+tk vn+Wr e
  CCD23996.1 117 LEYINLLQRLSVDLVRQIEISDPNVSKINVDGWNPPKKIQVLLDKFGEPDADTRELKIQVQRYLDDIKMSRAKYSLENKYSLQEKLSEVTKAVNQWRAE 215
                 79************************************************************************************************* PP

        THP2 100 wdniEnllFgdgpnslkkllqkveslkakl 129
                 wdniE++lFgdg+ns+k++l++ves+k+kl
  CCD23996.1 216 WDNIEMMLFGDGSNSMKNMLANVESIKSKL 245
                 ***************************996 PP

>> IL5  Interleukin 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3     4e-06     0.012      40      75 ..      24      59 ..      12     107 .. 0.85
   2 ?   -0.7   0.0      0.56   1.7e+03      61      85 ..     229     253 ..     226     258 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 4e-06
                GGGHHHHHHHHHHHHTTS--SSTHHHHHHHHHHHHH CS
         IL5 40 qlcieeifqGidtlknqtvqgeaveklfqnlslikk 75
                  ci++if+ ++ lkn+ + ++ +++ ++nls+  +
  CCD23996.1 24 YSCIKDIFKTLKQLKNKDATDDELKQNLDNLSIYYR 59
                56*****************************97544 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.56
                 STHHHHHHHHHHHHHHHHHHHHTTT CS
         IL5  61 eaveklfqnlslikkyidlqkkkcg 85 
                 +++++++ n+ +ik  ++ + k  +
  CCD23996.1 229 NSMKNMLANVESIKSKLEEEAKAES 253
                 6789999999999999988776544 PP

>> NAD_binding_5  Myo-inositol-1-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.9   0.00012      0.37     106     163 ..      41      98 ..      22     146 .. 0.82
   2 ?    0.3   0.0      0.12   3.6e+02       3      37 ..     221     255 ..     219     260 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5 106 eqlkpelekikplksvydkdfiaanqeeradnvlkgkskleqleqirkdireFkkknk 163
                    ++  +el++  +  s+y++d  ++  + + ++  +++ +l++l++i ++ ++Fk+k+k
     CCD23996.1  41 DATDDELKQNLDNLSIYYRDLTRSSIDLKYNKYQTREIQLSHLDKISNEAQTFKRKHK 98 
                    45567788777777*****************************************986 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.12
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_5   3 vllvGlgGnngtTlvagvlankkglswetkeglkk 37 
                    ++l+G g n    ++a v  +k +l+ e k + k+
     CCD23996.1 221 MMLFGDGSNSMKNMLANVESIKSKLEEEAKAESKE 255
                    8999*977777899*************99998886 PP

>> YecM  YecM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.6   8.2e-05      0.25      26     104 ..      74     150 ..      44     214 .. 0.69
   2 ?    0.3   0.1      0.16   4.7e+02     102     145 ..     215     258 ..     198     266 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.2e-05
                 --TT-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE---SS--SS-EEE CS
        YecM  26 dlsqleiDHialRvneeetaeawkeallqegellseneiNGRpIllfkLeqplqveeqkidvvELPypkekkypqegwE 104
                 +++++++ H+    ne +t +++++++  +  + + + iNG+ +  ++L q l+v    +  +E+  p+ +k++++gw+
  CCD23996.1  74 QTREIQLSHLDKISNEAQTFKRKHKTIYLREYVNTTESINGKSLEYINLLQRLSVD--LVRQIEISDPNVSKINVDGWN 150
                 5667788888888899***********************************99986..78999***************7 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.16
                 EEEEEEEE--S-GGGHHHHHHHTS-HHHHHST...T-EEEE--- CS
        YecM 102 gwEHielVlpseaqeleeealallekeallkkelegikvklssp 145
                  w+ ie+ l ++ +++ +++la +e+ ++  +e ++ + k ++ 
  CCD23996.1 215 EWDNIEMMLFGDGSNSMKNMLANVESIKSKLEEEAKAESKEEEG 258
                 69999999988888666666666665554444333333333333 PP

>> DUF3979  Protein of unknown function (DUF3979)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.32   9.5e+02      35      53 ..      62      80 ..      30     112 .. 0.67
   2 ?    0.4   0.0      0.25   7.5e+02      66     100 ..     139     180 ..      91     187 .. 0.64
   3 ?   11.6   0.8   8.7e-05      0.26      13      77 ..     186     249 ..     174     253 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.32
     DUF3979 35 ekmsvelyfneydelritl 53
                ++ s++l +n y+  +i+l
  CCD23996.1 62 TRSSIDLKYNKYQTREIQL 80
                3456666666665433333 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.25
     DUF3979  66 iaiskvele..edeesiqfvlerm.....psrmirlqlkPfl 100
                  ++sk++++  +  + iq +l+++     ++r +++q++ +l
  CCD23996.1 139 PNVSKINVDgwNPPKKIQVLLDKFgepdaDTRELKIQVQRYL 180
                 445566664223456788888876333335688888888777 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 8.7e-05
     DUF3979  13 sgwkyiiqerngkysivdelatekmsvelyfneydelritlykeeepivt..vqriaiskveleede 77 
                 s  ky +   ++kys+ ++l+   ++v+ +  e d++++ l+ ++++ +   + +++  k +lee+ 
  CCD23996.1 186 SRAKYSL---ENKYSLQEKLSEVTKAVNQWRAEWDNIEMMLFGDGSNSMKnmLANVESIKSKLEEEA 249
                 5557777...689*****************************9998765411455555666676665 PP

>> CpxA_peri  Two-component sensor protein CpxA, periplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.0    0.0016       4.9       7      64 ..       5      65 ..       2      79 .. 0.75
   2 ?   -0.6   0.1      0.53   1.6e+03       4      27 ..      75      98 ..      72     116 .. 0.73
   3 ?    3.6   0.1     0.027        81      14      45 ..     184     215 ..     173     244 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0016
                --HHHHHHHHHHHHHHHHHTSS---HHHHHHHHHH..T--...-TT--S-EEEEE-TTS-E CS
   CpxA_peri  7 ipaeelerlleirdkiekrfseeedlkkilkrleerknrk...kkkderlrlfltdldgei 64
                i +  ++ l e ++++++++s  +d+ k+lk+l++++ +    k++ ++l ++  dl+ + 
  CCD23996.1  5 IETTYFDSLSEQEQHLQENYSCIKDIFKTLKQLKNKDATDdelKQNLDNLSIYYRDLTRSS 65
                67778999*************************9988776333444456667777666555 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.53
                -EE--HHHHHHHHHHHHHHHHHTS CS
   CpxA_peri  4 ardipaeelerlleirdkiekrfs 27
                +r+i   +l+++ + +++++++++
  CCD23996.1 75 TREIQLSHLDKISNEAQTFKRKHK 98
                688888899999888888887765 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHHTSS---HHHHHHHHHH..T- CS
   CpxA_peri  14 rlleirdkiekrfseeedlkkilkrleerknr 45 
                 ++ +++ ++e+++s +e+l+++ k +++++ +
  CCD23996.1 184 KMSRAKYSLENKYSLQEKLSEVTKAVNQWRAE 215
                 68888999999**9999999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2222  (0.123933); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1935.89
//
Query:       CCD23997.1  [L=547]
Description: hypothetical protein NDAI_0C03370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-37  127.4   1.4    5.7e-27   94.2   1.5    2.2  2  GTP1_OBG  GTP1/OBG
    1.1e-19   70.5   0.0      2e-19   69.8   0.0    1.4  1  MMR_HSR1  50S ribosome-binding GTPase
    4.8e-07   29.4   0.0    1.3e-06   28.1   0.0    1.6  2  FeoB_N    Ferrous iron transport protein B
    0.00018   21.0   0.0    0.00043   19.8   0.0    1.6  1  Arf       ADP-ribosylation factor family
  ------ inclusion threshold ------
       0.03   14.5   0.1        1.8    8.8   0.1    2.5  2  Imm35     Immunity protein 35


Domain annotation for each model (and alignments):
>> GTP1_OBG  GTP1/OBG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   1.5   1.6e-30   5.7e-27       2      95 ..     110     201 ..     109     224 .. 0.90
   2 !   30.9   0.0     5e-11   1.8e-07     104     154 ..     312     363 ..     299     364 .. 0.90

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 1.6e-30
                 EEEEEEEE----------BEEETTCCCEEB-S--------EEEEE-TT--SSGCCCTSSEEE-------BTTTB-------EEEEESTTEEEEE CS
    GTP1_OBG   2 devkikvkaGkGGdGcvsfrrekyvpkggpdGGdGGkGGdvileadeklntlldlkykkkikAenGenGkgknksGkkgkdlvikvPvgtvvkd 95 
                 d + +k+k+G GG+Gc+sf r+   + g pdGGdGG+GG+++++a +++++l++lk  +++ A +GenG +++ +G+ gkd++ikvP gtvv+ 
  CCD23997.1 110 DVRIVKCKSGIGGNGCISFFRDANRRIGPPDGGDGGDGGSIYIQAVDSMDSLAKLK--TTYIAGDGENGATDQLDGAVGKDILIKVPRGTVVHW 201
                 78889***************************************************..9*********************************74 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 5e-11
                 EE-S.TT-EEEEE-----EE-GGGC-CSSCSS--EEEE-----EEEEEEEEC CS
    GTP1_OBG 104 dlte.dgeevlvakGGkgGkGnaafksstnraprfaekGeegeereleLelk 154
                 dl+e ++e ++++kGGkgG+Gn++f +s  r prf++ G++g e+++ +elk
  CCD23997.1 312 DLDEvSNEPICLLKGGKGGLGNMHFLTSLIRNPRFCKVGRNGLEQHFMFELK 363
                 66664678899***************************************98 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   5.5e-23     2e-19       2     111 ..     368     484 ..     367     487 .. 0.79

  Alignments for each domain:
  == domain 1  score: 69.8 bits;  conditional E-value: 5.5e-23
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE..ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETTTTCSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk..lkgkeielvDtpGliegaseekglgkaflalee.adlillvvdaseeklkpldeel 97 
                 ++++G pN+GKStL+ a+++++ +++++ +tT+ ++ g+v+  ++++ ++++D+pG+iegas++kglg +fl+++e +   ++v++++    +pl ++l
  CCD23997.1 368 FGLIGLPNAGKSTLLGAISNARPRIGHWEFTTLCPTIGTVSlgIDEPTFTVADIPGIIEGASQDKGLGLEFLRHIErSRGWVFVISLE--RPDPL-SDL 463
                 689*************************************98888899*************************99989*******966..23333.333 PP

                 HHHHHH.......TTSEEEEE CS
    MMR_HSR1  98 eellee.......akkplilv 111
                 e l++e       ++k ++++
  CCD23997.1 464 ELLINEvgglekvETKSIMVI 484
                 333322222233355555554 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.5e-10   1.3e-06       4      74 ..     369     439 ..     366     455 .. 0.83
   2 ?   -2.5   0.0       0.9   3.2e+03     121     154 ..     502     535 ..     499     537 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 3.5e-10
                 EEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE..TTEEEEEEE----SSSSSSSHHHHHHHHHH CS
      FeoB_N   4 alvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklkl..kgkeveivDlPGiYslsayseeekvardfl 74 
                  l+G pn+Gk+tl+ a+++a+ ++g w  +t   + g+++l  ++ ++++ D+PGi  ++  s+++ +  +fl
  CCD23997.1 369 GLIGLPNAGKSTLLGAISNARPRIGHWEFTTLCPTIGTVSLgiDEPTFTVADIPGI--IEGASQDKGLGLEFL 439
                 69******************************988888775337799********9..566677766666666 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.9
                 TTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH CS
      FeoB_N 121 kgieidlkkLsekLgvpvvktsakkkegieellk 154
                 +g  i ++++ ++ g + +++sa ++e++e l+ 
  CCD23997.1 502 RGKYIKMEEFCSRRGWETMPISALRGENLEILKM 535
                 677788899999999999*********9998875 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.2e-07   0.00043      19     166 ..     370     532 ..     358     541 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.2e-07
                 EEESTTSSHHHHHHHHHHS.......SCEECSSSSSEEEEEEEETTEEEEEEEE-S....SGGGGGG...GGGGCTTESEEEEEEETT-CTTHHHHHHH CS
         Arf  19 llGLDnaGKtTilkklkle.......elvttvPTigfnveeleiknlkftvwDvGG....qeklRpl...WknYfektdavifvvDsadreRleeakee 103
                 l+GL naGK+T+l  +++        e++t  PTig    +l i + +ftv D+ G     ++ + l   + +  e+  + +fv+     + l++ +  
  CCD23997.1 370 LIGLPNAGKSTLLGAISNArprighwEFTTLCPTIGTV--SLGIDEPTFTVADIPGiiegASQDKGLgleFLRHIERSRGWVFVISLERPDPLSDLELL 466
                 68***********9888762212222455677777754..577899*******976333344555551114455566679******************* PP

                 HHHHCTSGCCTTSEEEEEEE-TTSTTSS-...HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHH CS
         Arf 104 LkalleeeelkevallvlaNKqDlpeals...eeelrellgleelkgkrkleiqkcsavkgeglke 166
                 ++++   e++++  ++v++ K D++  ++   e+   + +++ee  ++r +e +  sa++ge+l+ 
  CCD23997.1 467 INEVGGLEKVETKSIMVICSKADVHPEVTagpESTRGKYIKMEEFCSRRGWETMPISALRGENLEI 532
                 ***********************97555412178888999**********************9975 PP

>> Imm35  Immunity protein 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00051       1.8      28      54 ..     259     285 ..     243     290 .. 0.85
   2 ?    2.8   0.0     0.036   1.3e+02      17      38 ..     430     451 ..     425     456 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00051
       Imm35  28 vdelergWlfaynteafldtgdpeaql 54 
                   e+ +gW++  +te+f  ++d+ + l
  CCD23997.1 259 SYEVGEGWIYKGQTEEFHTSKDWFKDL 285
                 56899*****************98766 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.036
       Imm35  17 pdralrvapekvdelergWlfa 38 
                 +d+ l ++  ++ e +rgW+f 
  CCD23997.1 430 QDKGLGLEFLRHIERSRGWVFV 451
                 455677888899*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 4435.45
//
Query:       CCD23998.1  [L=538]
Description: hypothetical protein NDAI_0C03380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-84  280.9   1.5    1.5e-83  280.0   1.5    1.4  1  NMD3      NMD3 family
     0.0067   16.3   1.5     0.0067   16.3   1.5    3.1  4  NinF      NinF protein
  ------ inclusion threshold ------
      0.025   14.6   4.7        4.3    7.4   5.0    2.7  1  DZR       Double zinc ribbon
       0.31   11.1   7.3        9.8    6.2   0.0    2.5  2  HypA      Hydrogenase/urease nickel incorporation, metallocha
       0.32   11.3   1.4       0.85    9.9   1.4    1.7  1  VPS11_C   Vacuolar protein sorting protein 11 C terminal


Domain annotation for each model (and alignments):
>> NMD3  NMD3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.0   1.5   4.1e-87   1.5e-83       1     243 []      33     262 ..      33     262 .. 0.98

  Alignments for each domain:
  == domain 1  score: 280.0 bits;  conditional E-value: 4.1e-87
        NMD3   1 CcrCGkeieeling..lCedCllkevditegiek.ievevCkeCgryl.pkgkWvkaeleseellaeclkklvekgLkvseeveevkvelvdaefiwte 95 
                 Cc+CG++i+ + +g  +C dC++ +vditegi++ +++ +C++C+r+l p g+W++a+les+ella+cl++l  kgL+        kv+lvda+fiwte
  CCD23998.1  33 CCNCGTPIDGS-TGlvMCYDCIKMTVDITEGIPReANISFCRNCERFLqPPGQWIRADLESRELLAICLRRL--KGLT--------KVRLVDASFIWTE 120
                 ********855.667*********************************9777********************..***9........************* PP

        NMD3  96 phskrikvkvtvqgevrgenetilqqevevevkvkrqqCprCsriagg.yyeaivQvRqkrelteeehkrtfelleqlilkhdahafiskikevkeGlD 193
                 phs+ri++k+tvqge+  +++ti+qq++eve++v   qCp+C+r+++  +++a+vQ+Rqk     + hkrtf++leqlil+h+ah ++++i+e+k+GlD
  CCD23998.1 121 PHSRRIRIKLTVQGEA--MSNTIIQQTFEVEYVVIAMQCPDCARSYTTnTWRATVQIRQK-----VPHKRTFLYLEQLILRHNAHVDTISISEAKDGLD 212
                 ****************..7899************************999***********.....********************************** PP

        NMD3 194 fyfgsksaArklveflksevggkvkeseklvsedkksgkevyrltysvrl 243
                 f++++k++A k+++fl+s+v++k k+se+l+s+d+++g+++y+++ysv++
  CCD23998.1 213 FFYSQKNHAVKMIDFLNSVVPIKSKKSEELISQDTHTGSSTYKFSYSVEI 262
                 ************************************************98 PP

>> NinF  NinF protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.5   1.9e-06    0.0067       5      39 ..      18      53 ..      16      59 .. 0.80
   2 ?   -3.9   0.0       3.7   1.3e+04      19      28 ..      71      80 ..      69      81 .. 0.76
   3 ?    0.1   0.1       0.2   7.3e+02       2      26 ..     138     163 ..     137     167 .. 0.84
   4 ?   -3.6   0.2       2.9     1e+04      49      57 ..     495     503 ..     484     503 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.9e-06
        NinF  5 iqslaYekesveRaLCanCskkLevde.vhvCeeCv 39
                 q+++++++ v+  LC nC+  ++      +C +C+
  CCD23998.1 18 LQTQQHQHQQVATVLCCNCGTPIDGSTgLVMCYDCI 53
                59******************9887543145577776 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.7
        NinF 19 LCanCskkLe 28
                 C nC + L+
  CCD23998.1 71 FCRNCERFLQ 80
                5999988776 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.2
        NinF   2 LsPiqslaYekesveRaL.CanCskk 26 
                  + i  + +e e v  a+ C +C++ 
  CCD23998.1 138 SNTIIQQTFEVEYVVIAMqCPDCARS 163
                 56777899999************975 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 2.9
        NinF  49 nssmaeeeD 57 
                  + m e+eD
  CCD23998.1 495 ANGMEEDED 503
                 456999998 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.0    0.0012       4.3       1      39 [.      33      80 ..      33     172 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0012
         DZR  1 CpqCgeelppdar..fCseCgtklkavaa.......edrCpsCgekvd 39
                C++Cg++++ +    +C++C +     ++         +C +C++ ++
  CCD23998.1 33 CCNCGTPIDGSTGlvMCYDCIKMTVDITEgipreanISFCRNCERFLQ 80
                888888876555444777777774444445555666777777776555 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.3    0.0062        22      56     102 ..      17      62 ..       7      77 .. 0.74
   2 ?    6.2   0.0    0.0027       9.8      53      84 ..     138     168 ..      93     178 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0062
                 TTTT-EEEEEEE--EEEETTTS-EEECHHHHHS-TTTSSS-EEEEES CS
        HypA  56 vlegaeLeieevpvkvrCreCgkefeleekalrCpkCgsadveivsG 102
                 +l+  + + ++v  ++ C +Cg+ ++ ++  + C +C +  v+i++G
  CCD23998.1  17 MLQTQQHQHQQVATVL-CCNCGTPIDGSTGLVMCYDCIKMTVDITEG 62 
                 4554444455555555.557**99997654568***********998 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0027
                 CC.TTTT-EEEEEEE--EEEETTTS-EEECHH CS
        HypA  53 egtvlegaeLeieevpvkvrCreCgkefelee 84 
                 ++t+++  ++e+e v + ++C +C +++++++
  CCD23998.1 138 SNTIIQ-QTFEVEYVVIAMQCPDCARSYTTNT 168
                 344444.7899*************99998764 PP

>> VPS11_C  Vacuolar protein sorting protein 11 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.4   0.00024      0.85       4      27 ..     446     469 ..     444     472 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00024
     VPS11_C   4 irelrraQeesadrhdlFkaaLee 27 
                 +++ +++ e++ ++++lF ++Lee
  CCD23998.1 446 SKAQKQDMERAEKDYELFLQELEE 469
                 7999*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2080  (0.116013); expected 358.6 (0.02)
Passed bias filter:                      784  (0.043728); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 3950.04
//
Query:       CCD23999.1  [L=672]
Description: hypothetical protein NDAI_0C03390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.4e-53  179.8   3.8    1.4e-52  179.2   3.8    1.2  1  ATG7_N        Ubiquitin-like modifier-activating enzyme ATG7 
    2.1e-49  168.1   0.0      4e-49  167.2   0.0    1.4  1  ThiF          ThiF family
     0.0012   18.9   0.0     0.0083   16.2   0.0    2.2  2  Shikimate_DH  Shikimate / quinate 5-dehydrogenase
  ------ inclusion threshold ------
      0.036   13.4   0.0        2.2    7.6   0.0    2.5  2  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
      0.071   12.8   0.0       0.22   11.1   0.0    1.8  2  ApbA          Ketopantoate reductase PanE/ApbA
       0.19   12.0   0.0        1.7    8.9   0.0    2.3  2  TrkA_N        TrkA-N domain


Domain annotation for each model (and alignments):
>> ATG7_N  Ubiquitin-like modifier-activating enzyme ATG7 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.2   3.8   4.7e-56   1.4e-52       4     299 ..      22     320 ..      19     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 179.2 bits;  conditional E-value: 4.7e-56
                 B---EEE-HHHHHHHHHHHHHTTTT----EEEEEEE-S-..-CTTB---EEE-GGGS............------BTTBEEEEEEEEEESSHHHHHCS- CS
      ATG7_N   4 apfssaielsFwhelaslKldelkLddsarpilglyelr..daselssrlsldassl............etsdevpkgevraeGtlknfNTieeFknld 88 
                 apf+s++++sF++el++lKld+lkL ++++p+++++ l+  ++s++ ++l l+++s+             + +++ + +++++G+++nfNT+e+Fk+l+
  CCD23999.1  22 APFQSFLDTSFFQELSRLKLDVLKLGSEEVPLFSSLALKnvSKSNECAHLFLNEQSFrvpmdggkneeeLEYKKEGTIDIPIQGSITNFNTFEKFKSLN 120
                 79*************************************988889999***************9988776667788999******************** PP

                 CHHHHHHHHHHHHHHHHTTHHHH-GGGTT-EEEEEEEETTTTEEEEEEEEEEEE-SS--EEEE.EEEHHHHS-HHHHHHHHHHHHHHHHSTTTTT--EE CS
      ATG7_N  89 kkallkeaakkiweaiksgkaledpslLssflllsFADLKkykFyYwfafPalklskpawvlseeksaseelsekeleslveavqklrkssderqegff 187
                 k+++l+e a +++++   g  +++ +++ +f ++sFADLKkyk+yYw++ P++   kp  +        + l+++e+ + ve++q++ ks++++   + 
  CCD23999.1 121 KQEFLNEKALELLKS---G--EKNINECIKFYIISFADLKKYKYYYWVCSPSF---KPIDL------DIKILKSQETVTNVEKYQTWFKSHKTE--WIG 203
                 **********99988...3..3566899*************************...45555......47899***************9998763..233 PP

                 EEEEETTS-EEEE-GGGHHHH-STTEEEEEEEE-----TTS-BTTHHHHHHHHHHHH--S..EEEEEEE-EET.TEE-TT..............TSEEE CS
      ATG7_N 188 lvkksreeeleiaslseleeededeedvyvgfvDpssleenpGWpLRNlLvllrarwklk..kvkvlcyRdskasakreee.............rSlvl 271
                 l++ +  +  e+as s++ +    ++  ++++ D+s+l+ +p+  L+Nl +++  ++  +  +++v+++R sk+s+ +e+               Sl+ 
  CCD23999.1 204 LIDHD--S-TEVASYSKAIA----KTAKIIILRDTSNLKGTPSSLLQNLFTIYMNDQDDHirEIEVFFIRPSKESSFKETFrlqlegksktdyaLSLTS 295
                 44443..3.78898888888....88999**********************99999977788**********876555443555555555444444444 PP

                 EEE--EEE.EE--B.TTBS--EEEE-TTT CS
      ATG7_N 272 elklpkav.GWernekgklgprlvdLsel 299
                 +l   k v GWern +gkl+pr vdLsel
  CCD23999.1 296 NL---K-VsGWERNMQGKLMPRAVDLSEL 320
                 44...5.88*****************985 PP

>> ThiF  ThiF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.2   0.0   1.4e-52     4e-49      14     242 ..     349     609 ..     334     614 .. 0.90

  Alignments for each domain:
  == domain 1  score: 167.2 bits;  conditional E-value: 1.4e-52
                 HHHHTSEEEEE--SHHHHHHHHHHHHHTTTEEEEEESSB--GGGGGTBTTS-GGGTTSBHHHHHHHHHHHT-TTSEEEEEES-C............CGC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxx RF
        ThiF  14 ekLrdskvllvGaGglGsellknLalsGvgkltlvDnDkielsNlnRqflfreediGkpKaevaaealqeinpdveveavteri............tde 100
                 + +++++vll+GaG+lG++++++L+++Gv+++tlvDn ++++sN++Rq lf+++d GkpKae+aa+  ++++p v+ + v+ ++            +++
  CCD23999.1 349 DIIKKQQVLLLGAGTLGCYIARALMAWGVRNITLVDNSTVSYSNPVRQSLFEFADFGKPKAEAAAATMKRVFPLVNAKGVNLNVpmighpinneerEKK 447
                 55899**************************************************************************************98765333 PP

                 C.S.-HHHHTT-SEEEEESSSHHHHHHHHHHHHHHT-EEEEEEEETTEEEEEEEE...........E...CCS-ECTSS-T....GGS.EECCCCEEHH CS
                 x.x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........x...xxxxxxxxxxx....xxxxxxxxxxxxxx RF
        ThiF 101 t.v.leellesvDlVvdalDniearrlvnracvkkgiplieagtlgfegqvvvii...........p...gktgcyeCldp....sstedptekkvplc 179
                 + + l+el++s+D+V++ +D++e+r+l+  +c  +g+ +i+ ++lgf++++v++            +   ++ gcy+C+d+    +s  d+t ++ +++
  CCD23999.1 448 EfYqLRELIRSHDAVFLLMDSRETRWLPTVLCNIEGKIVIN-AALGFDSYLVMRHgnyhgddgvavKeddERLGCYFCHDVvaptDSLSDRTLDEMCTV 545
                 352589******************************99999.9***********4345565555551567**********777799********99999 PP

                 HHHHCTE-B-HHHHHHHHHHHHHHHHHHH..........TTBCGGGCCEEEECCTTTTEEEEECCEEEEEEC- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        ThiF 180 tsiagnipaiatttavvaglaalellkll..........sgkeklenslltqvdllesrfenvelerakkskc 242
                          +++ +a++a  + +el  +l           ++e++ +++++q++++++rf++++le ++ + c
  CCD23999.1 546 ---------TRPGVAMMAASQSVELFVSLlqhsgftnakTNQETILGEIPHQIRGFLNRFTTLKLETPAYKYC 609
                 .........9****************************977888*********************98876644 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.8e-06    0.0083       9      43 ..     350     384 ..     345     400 .. 0.87
   2 ?   -1.0   0.0      0.55   1.7e+03      57      85 ..     440     468 ..     433     473 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.8e-06
                   ..TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEE CS
  Shikimate_DH   9 slkekkvlliGaGemaelvakhLlakgvkkvvvaN 43 
                    +k+++vll+GaG ++  +a++L+a gv++++ + 
    CCD23999.1 350 IIKKQQVLLLGAGTLGCYIARALMAWGVRNITLVD 384
                   5789***************************9874 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.55
                   T.ET-EEEEGCGHHHHHHT-SEEEE-SSS CS
  Shikimate_DH  57 kgeeiealkleelkellaeadvvisatas 85 
                   ++ee e +++ +l+el+++ d v+    s
    CCD23999.1 440 NNEEREKKEFYQLRELIRSHDAVFLLMDS 468
                   56677889999************976665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00073       2.2      28      70 ..     345     388 ..     327     410 .. 0.78
   2 ?    2.8   0.0     0.022        67      58     101 ..     428     468 ..     422     474 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00073
                   CGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHH CS
  2-Hacid_dh_C  28 allgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrskk 70 
                   ++    +++++v ++G+G +G  +a+ l a+g+ +++ +d s  
    CCD23999.1 345 DIDLDIIKKQQVLLLGAGTLGCYIARALMAWGVrNITLVDNSTV 388
                   555666899************************67777777654 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.022
                   TT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S-- CS
  2-Hacid_dh_C  58 fgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpl 101
                   ++++v ++ +  ++ee   +++ e+ +l el+++ D v+l +  
    CCD23999.1 428 VNLNVPMIGHPINNEE---REKKEFYQLRELIRSHDAVFLLMDS 468
                   5555555544444444...3445899*************99875 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.1   3.3e+03      66      92 ..     168     194 ..     157     204 .. 0.78
   2 ?   11.1   0.0   7.5e-05      0.22       2      43 ..     357     401 ..     356     420 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.1
                 CS-ESEEEE-SSGGGHHHHHHHHGGGE CS
        ApbA  66 lepidlvivtvKayqteealeeikpll 92 
                  +pidl i  +K++ t+ ++e+++   
  CCD23999.1 168 FKPIDLDIKILKSQETVTNVEKYQTWF 194
                 578888888889999998888887655 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.5e-05
                 EEES-SHHHHHHHHHHHH.HTHCEEEE-SCH.HHHH.HHHHCEEE CS
        ApbA   2 ailGaGaiGsllaakLak.agadvtlilrsr.rlea.lkknGlrl 43 
                 + lGaG +G+++a  L +   +++tl+++s   + + +++  +++
  CCD23999.1 357 LLLGAGTLGCYIARALMAwGVRNITLVDNSTvSYSNpVRQSLFEF 401
                 789*************9989999*****99987777677766555 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.37   1.1e+03      18      67 ..     179     227 ..     175     234 .. 0.78
   2 ?    8.9   0.0   0.00059       1.7       1      31 [.     356     387 ..     356     401 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.37
                 HHTTEEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGGESEEE CS
      TrkA_N  18 seggkdvvvidkdeerveelreeglevvvgdatdeevLeeagiekadavi 67 
                 ++++  v+ ++k +  +++++ e +  + +d t+ +   +a +++a+++i
  CCD23999.1 179 KSQE-TVTNVEKYQTWFKSHKTEWIGLIDHDSTEVASYSKAIAKTAKIII 227
                 4444.588888888888888888888899999999999999999998877 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00059
                 EEEES-SHHHHHHHHHHHH.TTEEEEEEESSH CS
      TrkA_N   1 iiiiGlGrvGrslaeeLse.ggkdvvvidkde 31 
                 ++++G+G++G  +a+ L++ g ++++++d++ 
  CCD23999.1 356 VLLLGAGTLGCYIARALMAwGVRNITLVDNST 387
                 5799***************99899*****975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4567.89
//
Query:       CCD24000.1  [L=263]
Description: hypothetical protein NDAI_0C03400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-54  182.5   0.1    7.6e-54  182.1   0.1    1.2  1  Proteasome      Proteasome subunit
    2.6e-12   46.1   0.0    5.4e-12   45.2   0.0    1.6  1  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.1   0.1   8.4e-58   7.6e-54       1     188 [.      31     220 ..      31     222 .. 0.95

  Alignments for each domain:
  == domain 1  score: 182.1 bits;  conditional E-value: 8.4e-58
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 +k G+t++Gi +++gvvl+++krat  s ll+ +++eKi +i  h+g+a++Gl+aDar ++++ar+ a +++l y+++++ve l+++v++++++    +
  CCD24000.1  31 IKLGSTAIGISTSEGVVLGVEKRAT--SPLLEADSIEKIVEIEHHVGCAMSGLTADARSMIEHARVAAVNHNLYYDEDMKVESLTQSVCDLALRFGEGA 127
                 589**********************..******************************************************************999755 PP

                 ......TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEE CS
  Proteasome 100 ......grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknieva 188
                         rpfgv+lliag+d+++g++Ly+ +psG+++++ +a aiGsgse a++ l++e+++ ltl ea+ l++k+lk+++e +kl ++n+++ 
  CCD24000.1 128 sgeerlMSRPFGVALLIAGYDDDEGYQLYHAEPSGTFYRY-NAKAIGSGSEGAQSELQNEWHSSLTLREAEVLVLKILKQVME-EKLDENNAQLS 220
                 44555577********************************.7*****************************************.88999999876 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0     6e-16   5.4e-12       1      23 []       8      30 ..       8      30 .. 0.98

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 6e-16
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YDr ++tFSP+GRLfQVEY ++A
      CCD24000.1  8 YDRGVSTFSPEGRLFQVEYSLEA 30
                    ********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       973  (0.0542696); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2003.27
//
Query:       CCD24001.1  [L=798]
Description: hypothetical protein NDAI_0C03410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-37  129.3   2.7    2.3e-37  129.3   2.7    1.9  2  GCP_N_terminal  Gamma tubulin complex component N-terminal
    9.2e-18   64.7   7.7    9.2e-18   64.7   7.7    2.0  2  GCP_C_terminal  Gamma tubulin complex component C-terminal
  ------ inclusion threshold ------
      0.036   13.6   0.1       0.39   10.2   0.1    2.2  2  NPR1_like_C     NPR1/NIM1 like defence protein C terminal


Domain annotation for each model (and alignments):
>> GCP_N_terminal  Gamma tubulin complex component N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.3   2.7   3.9e-41   2.3e-37       1     305 [.      61     408 ..      61     408 .. 0.84
   2 ?   -1.4   0.1      0.23   1.4e+03      64      88 ..     641     673 ..     575     719 .. 0.59

  Alignments for each domain:
  == domain 1  score: 129.3 bits;  conditional E-value: 3.9e-41
  GCP_N_terminal   1 lrdllylLqGisgklirfdekdd..ervvkdvrlpgllppslrslverllelgtlyrrlrkfveevsrsesglvlqalaaaldeelteyyrl.ia 92 
                     ++dll +L+G++g +ir++++ +  + + +d+r+++ ++ +l++l++++++lg +y  + +++e+ s+ ++g+vlq l+  ++++++ yy   + 
      CCD24001.1  61 IKDLLNVLLGLDGAYIRYNNSFNpvNDHIPDFRIAKKMDSTLKALCNKVVKLGRQYFFVCRYMERLSDLSFGMVLQRLSFEIRQFIRLYYLRfVN 155
                     79***************988666677788889998888***********************************************99988555** PP

  GCP_N_terminal  93 qlEsqlledsesiltLlrlevwlqetlll..lrvLanlveeve.............................kanl..............kggal 142
                     +lE+++ e+ +  ++++ l+ +++++     l++ + ++ +++                             k  +              +gg +
      CCD24001.1 156 SLEKEFIENLN--FSIRDLVQKIKDSEIVkqLELFYLICLKIDnemnlrnnidlmeqdfnnfindlkdetqyK--SdillatdssilpipRGGII 246
                     **********9..**********98765445************888888888888777777777776665551..055666667789999***** PP

  GCP_N_terminal 143 lsllhe..aaqhgdpkvrkllsellervsrpflemlekWileGelsDpynEfFveenesvakeklked...dseklweekYtlrkemlPsflsee 232
                     l +++e  + + gd++  ++l++ll+++s+ +++ml++W+ +Gel DpynEf++ +  + a  +lk++   ++++lw ++Y++rk+ l + ++ +
      CCD24001.1 247 LKIVQEfiEDNLGDKSSVTFLKNLLNSISVNYCDMLQQWMTQGELIDPYNEFMICDAMKNA--DLKTNylkYDDRLWFTRYRIRKDGLLKKFELK 339
                     ******87777*******************************************7766554..44444578****************88776655 PP

  GCP_N_terminal 233 ....laekIletGkslnflrescgd.sewiekteseekeleyiddleelssslslsleelidsayklaskrllelLfk 305
                         l  k+l tGk ln+lr s +  +  i+++++      ++d ++    +  ++le +i++ y+ a++ +l+l f+
      CCD24001.1 340 dgnvLLFKVLMTGKLLNILRTSLNMsKLPIDSNND------LTDFVQ---LTEGTNLELYINKWYENANRLCLQLYFE 408
                     1222566**************97763334663333......344333...334889******************9885 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.23
  GCP_N_terminal  64 v........srsesglvlqalaaaldeelteyy 88 
                     v         +s+   +++ l++ l+e+lt+  
      CCD24001.1 641 VidkeitkiINSNKATTINDLQNVLQESLTNIM 673
                     032223333233333333444444444444333 PP

>> GCP_C_terminal  Gamma tubulin complex component C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.92   5.5e+03     264     286 ..     152     174 ..     119     196 .. 0.67
   2 !   64.7   7.7   1.5e-21   9.2e-18      87     291 ..     500     774 ..     418     796 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.92
  GCP_C_terminal 264 erleelekeFrkkvslllkvlra 286
                     + +++lekeF +++++ +++l +
      CCD24001.1 152 RFVNSLEKEFIENLNFSIRDLVQ 174
                     55667778888887777777733 PP

  == domain 2  score: 64.7 bits;  conditional E-value: 1.5e-21
  GCP_C_terminal  87 s...........................................legldfltLeYkvpwplslvitpealekYqriFrfLlrvkrvefalsslw. 137
                     +                                            + ++ l+++ +vp pl+++i++ ++++Yq i r++  +++    l+++w 
      CCD24001.1 500 NilndknplqdssdkilhapnfenlrsillneashlpksskesrKSNIHYLQFNLNVPYPLNIIISRICIDQYQIISRYIHLLQYHGKLLDDTWf 594
                     34444444444444444444444444444444556666666655779***********************************************9 PP

  GCP_C_terminal 138 ..krrkatgarsvl.......lkrarllrqemlhfvsqlqyYvldeviessWreleeklkkeatdldelieaHeafLdsilkkclLrskkkllkl 223
                       +++k  + ++ +       +kr+r l ++m +fv+ + +Y+++ vi  +  +  ++ k  at++++l ++ ++ L++i+++c L s  +l+++
      CCD24001.1 595 eiNKHKIWRYKGYNsninrtiIKRCRILHNKMNNFVKVVLEYFTQNVIDKEITKIINSNK--ATTINDLQNVLQESLTNIMTNCCL-S--QLIEI 684
                     9733333333322234466679999************************99999999874..555*********************.3..68999 PP

  GCP_C_terminal 224 leeilelileFakvldglylsvselt......................aeeaeeeeleekleerleelekeFrkkvslllkvlralkeqe 291
                       +++e+i++F+k++ ++ ++   l+                       +e+e+  l++++ + +e+++  F+++v+ +++ l ++ +++
      CCD24001.1 685 QLQLFEIIHKFSKFIISMRQKLCRLNptiyehylsrsyeennnnaqdgYNEEEALLLTSNIGAYIEQVYFGFDQHVEAFIEGLTHYYNSR 774
                     9999*******99887755333333367999************9998744445666777888*********************8873333 PP

>> NPR1_like_C  NPR1/NIM1 like defence protein C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   6.6e-05      0.39     115     188 ..      92     163 ..      79     172 .. 0.79
   2 ?    0.4   0.0     0.066   3.9e+02      27      68 ..     280     324 ..     277     326 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.6e-05
  NPR1_like_C 115 fkikekllsRleaLs.kTVelGkrfFprCSevLdkild..ddltdlallekdtpeerrqkkqrymelkedvkkaFsk 188
                  f+i +k+ s l+aL+ k V+lG+++F  C      +++   dl+  ++l++ + e r+  +  y    ++++k F +
   CCD24001.1  92 FRIAKKMDSTLKALCnKVVKLGRQYFFVCR-----YMErlSDLSFGMVLQRLSFEIRQFIRLYYLRFVNSLEKEFIE 163
                  78999*********74899**********7.....444445688888888888888888888888888887777766 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.066
  NPR1_like_C  27 eiLeqeerrdpl...leeasvslalaadelrmrLlylEnRValAr 68 
                  ++L+q + + +l    +e +++ a+ + +l++  l++++R ++ r
   CCD24001.1 280 DMLQQWMTQGELidpYNEFMICDAMKNADLKTNYLKYDDRLWFTR 324
                  6777777766653325677788999999**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1148  (0.0640303); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 5262.93
//
Query:       CCD24002.1  [L=462]
Description: hypothetical protein NDAI_0C03420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.6e-150  498.5   0.0   8.1e-150  498.0   0.0    1.1  1  Enolase_C  Enolase, C-terminal TIM barrel domain
      2e-56  189.8   0.4    3.2e-56  189.1   0.4    1.3  1  Enolase_N  Enolase, N-terminal domain
    4.1e-06   26.5   0.0    1.1e-05   25.1   0.0    1.6  1  MR_MLE_C   Enolase C-terminal domain-like
  ------ inclusion threshold ------
       0.12   11.6   0.4       0.52    9.4   0.1    2.0  2  MAAL_C     Methylaspartate ammonia-lyase C-terminus


Domain annotation for each model (and alignments):
>> Enolase_C  Enolase, C-terminal TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  498.0   0.0  1.8e-153  8.1e-150       2     293 ..     170     457 ..     169     459 .. 0.99

  Alignments for each domain:
  == domain 1  score: 498.0 bits;  conditional E-value: 1.8e-153
                 -EE-EE-EEEEE-GGGSSSS--SSEEEEE-TT-SSHHHHHHHHHHHHHHHHHHHHHCC.GGGG-B-TTS-B----SSHHHHHHHHHHHHHHCT-TCTBE CS
   Enolase_C   2 lvlPvPalnvinGGshagnklalqefmilPvgassfkealrlGaevyhklksvlkkkygksatnvGdeGGfaPnlqsnkealdliveaiekaGykgkvk 100
                 +vlPvP+lnv+nGGshag++lalqefmi+P+ga++f ealr+G+evyh+lks++kk+yg+sa+nvGdeGG+aPn+q+++ealdliv+ai++aG++gk+k
  CCD24002.1 170 YVLPVPFLNVLNGGSHAGGALALQEFMIAPTGAKTFAEALRMGSEVYHNLKSLTKKRYGSSAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKIK 268
                 79************************************************************************************************* PP

                 EEEE--GGGCEETCTTEEECTTTTTT..GGCEEEHHHHHHHHHHHHHHS-EEEEES-S-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT CS
   Enolase_C 101 ialdvassefykekdkkydldfkeeesdkskkltseqladlykelvkkyPivsiedpldeddweawkklteelgdkvqivGddltvtnpkrlkeaiekk 199
                 iald+assef+  kd+kydldfk++esd+sk+l+  qladly+ l+kkyPivsiedp++eddweaw++++++ g  +qiv ddltvtnp r+++aiekk
  CCD24002.1 269 IALDCASSEFF--KDGKYDLDFKNPESDSSKWLSGPQLADLYHTLMKKYPIVSIEDPFAEDDWEAWSHFFKTAG--IQIVADDLTVTNPARIATAIEKK 363
                 ***********..889**********************************************************..*********************** PP

                 --SEEEE-HHHH-SHHHHHHHHHHHHHTT-EEEEE--SC--S--HHHHHHHHCT-SEEE---S-SHHHHHHHHHHHHHHHHHGCC-EE-GGGCT CS
   Enolase_C 200 aanalllkvnqiGsltesleavklakeagygvvvshrsGetedttiadlavglsaGqiktGaparserlakynqllrieeelgekakyaGkkvr 293
                 +a+alllkvnqiG+l+es++a++++ +ag+gv+vshrsGetedt+iadl+vgl++GqiktGaparserlak+nq+lrieeelg+ka++aG++++
  CCD24002.1 364 SADALLLKVNQIGTLSESIKAANDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQIKTGAPARSERLAKLNQILRIEEELGDKAIFAGENFH 457
                 *******************************************************************************************986 PP

>> Enolase_N  Enolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.1   0.4   7.1e-60   3.2e-56       1     131 []      28     159 ..      28     159 .. 0.97

  Alignments for each domain:
  == domain 1  score: 189.1 bits;  conditional E-value: 7.1e-60
                 EEEEEEEEEE-TTS-EEEEEEEEETTC-EEEEE--B-BSSSSSS-B----SSTTSGGGT--HHHHHHHHHTHHHHHT..TSBTT-HHHHHHHHHHHH-S CS
   Enolase_N   1 IkkvkareildSrGnpTvevevttedgalgraavpsGaStgekealelrDgdkkrylgkgvekavenvnekiapali..gldvtdqeeiDkllielDgt 97 
                 ++k++ar ++dSrGnpTveve+tte+g ++ra+vpsGaStg +eale+rD+dk+++lgkgv++av+nvn++iapa +  +ldv+dq+++D++l++lDgt
  CCD24002.1  28 VSKIYARSVYDSRGNPTVEVEITTENG-VFRAMVPSGASTGVHEALEMRDEDKSKWLGKGVLNAVANVNNVIAPAFVkaNLDVKDQKAVDDFLLNLDGT 125
                 579*********************999.57**********************************************966799***************** PP

                 TT-TTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH CS
   Enolase_N  98 enksklGaNailavSlAvakaaAkakelplyryl 131
                  nksklGaNail+vSlA+a+aaA++k++ply++l
  CCD24002.1 126 ANKSKLGANAILGVSLAAARAAAAEKNVPLYKHL 159
                 ********************************97 PP

>> MR_MLE_C  Enolase C-terminal domain-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   2.5e-09   1.1e-05      58     155 ..     300     398 ..     233     419 .. 0.72

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.5e-09
                 BHHHHHHHHHHH.GGGTESEEESSSSTTTHHHHHHHHHHHHSSEEEESTT.SSSHHHHHHHHHHTSESEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEE CS
    MR_MLE_C  58 dlatAirvarel.eeldllwlEEPvppeddleglaelrarasipiaagEs.lysradfrelleagavdivqpdvsrvgGitearkvaalaeafgvpvap 154
                 + ++   + + l +++ +  +E+P+   dd+e+  +  ++a+i+i+a+   ++++a+++ ++e++ +d++ ++v+++g ++e++k a+   a+g+ v++
  CCD24002.1 300 SGPQLADLYHTLmKKYPIVSIEDPFAE-DDWEAWSHFFKTAGIQIVADDLtVTNPARIATAIEKKSADALLLKVNQIGTLSESIKAANDSFAAGWGVMV 397
                 55555556666634588999******9.78********5559*****9961566*********************************866666665554 PP

                 B CS
    MR_MLE_C 155 H 155
                  
  CCD24002.1 398 S 398
                 3 PP

>> MAAL_C  Methylaspartate ammonia-lyase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.13   5.7e+02     195     218 ..     122     145 ..     105     151 .. 0.84
   2 ?    9.4   0.1   0.00012      0.52     137     205 ..     338     407 ..     330     423 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.13
      MAAL_C 195 lGGscnetdvsarvsvhvalatrp 218
                 l G++n  + +a+++  v+la+  
  CCD24002.1 122 LDGTANKSKLGANAILGVSLAAAR 145
                 679****************99754 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00012
      MAAL_C 137 gikvelvaDeWcntl.edirefvdaeaadlvqiktPDlGginntieavlyckekgvgaylGGscnetdvs 205
                 +  +++vaD+ + t    i + +++++ad++ +k+  +G+++++i+a   +   g g+++   + et+ +
  CCD24002.1 338 TAGIQIVADDLTVTNpARIATAIEKKSADALLLKVNQIGTLSESIKAANDSFAAGWGVMVSHRSGETEDT 407
                 56799*****98775268******************************9999999999998888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3419.74
//
Query:       CCD24003.1  [L=182]
Description: hypothetical protein NDAI_0C03430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-22   80.1  20.8    4.6e-21   76.0  16.5    2.4  2  Ctr       Ctr copper transporter family
  ------ inclusion threshold ------
        2.5    8.1   7.0       0.47   10.5   0.7    2.3  2  UPF0242   Uncharacterised protein family (UPF0242) N-terminus


Domain annotation for each model (and alignments):
>> Ctr  Ctr copper transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.93   8.3e+03      89      89 ..      24      24 ..       7      44 .. 0.40
   2 !   76.0  16.5   5.2e-25   4.6e-21       1     146 [.      55     162 ..      55     164 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.93
         Ctr 89 l 89
                +
  CCD24003.1 24 N 24
                1 PP

  == domain 2  score: 76.0 bits;  conditional E-value: 5.2e-25
         Ctr   1 mlFhwstddt.ilfrsWritskgqlagsciglfllaifyeflralrerlerewdrhlarsrekrkaassplvdssssseeeaeakstsslskseakksv 98 
                 mlF+ws+++t ++f++W+i+s ++l++sc+ ++ l+ +ye+ +    rl               +++++++ +                   ++++   
  CCD24003.1  55 MLFSWSYKNTcVVFKWWHIRSFFGLIISCLSIMTLSYLYEYFK---YRL---------------NSYEENELK-------------------RNSNAVN 116
                 9******************************************...566...............334444332...................1223333 PP

         Ctr  99 rttpeqqlirallyvvqvllaYilMLlvMtyNvglflavilGagvGef 146
                 + + +  l  ++ y+vqv+++++lML++MtyN++l+lav+ Ga++G++
  CCD24003.1 117 TRKFK--LHTSIWYAVQVGFSFMLMLVFMTYNGWLMLAVVFGAFLGHY 162
                 44444..8899***********************************97 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2     0.045     4e+02     142     172 ..      10      40 ..       6      45 .. 0.78
   2 ?   10.5   0.7   5.2e-05      0.47      22      79 ..      60     117 ..      52     131 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.045
     UPF0242 142 eqLaekqellqeyqetieeqrsvlekrqdqi 172
                 ++L + q+  ++  ++i++ + ++e+ q  +
  CCD24003.1  10 DHLMNNQKNKETNMNMIHNNHHSMESHQHMV 40 
                 5677778888888899999999999988765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 5.2e-05
     UPF0242  22 ysiqllseqksWsllsiGlllaaaGsLlllllllkwekalkeklekskleekeaklte 79 
                 +  ++  + k+W + s+  l++++ s++ l+ l+++ k   + +e+++l+ + + +  
  CCD24003.1  60 SYKNTCVVFKWWHIRSFFGLIISCLSIMTLSYLYEYFKYRLNSYEENELKRNSNAVNT 117
                 4444445589******988889999998888888776666666788888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1258  (0.0701657); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1454.65
//
Query:       CCD24004.1  [L=431]
Description: hypothetical protein NDAI_0C03440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-46  156.3   0.1    4.5e-37  127.7   0.1    2.1  2  FMO-like       Flavin-binding monooxygenase-like
    4.3e-20   72.2   0.3    1.8e-18   66.8   0.3    2.2  1  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.9e-17   63.7   0.0      9e-16   58.2   0.0    3.3  3  NAD_binding_9  FAD-NAD(P)-binding
      8e-16   58.1   0.0    1.1e-14   54.3   0.0    2.1  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    1.1e-11   44.6   1.5    7.1e-10   38.5   0.1    3.3  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
    2.9e-07   30.4   0.0    0.00016   21.4   0.0    2.4  2  DAO            FAD dependent oxidoreductase
    3.5e-06   27.2   0.0    1.2e-05   25.5   0.0    1.9  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    6.6e-06   25.1   0.1     0.0042   15.9   0.0    2.4  3  HI0933_like    HI0933-like protein
     0.0002   20.8   0.0     0.0039   16.5   0.1    2.4  3  Amino_oxidase  Flavin containing amine oxidoreductase
      0.002   17.4   0.0      0.018   14.3   0.0    2.2  2  Thi4           Thi4 family
  ------ inclusion threshold ------
      0.046   13.4   0.0        0.1   12.3   0.0    1.5  1  DUF5083        Domain of unknown function (DUF5083)
      0.055   12.9   0.0         12    5.4   0.0    2.5  3  Glu_dehyd_C    Glucose dehydrogenase C-terminus
       0.07   11.7   0.0       0.11   11.0   0.0    1.2  1  Adaptin_N      Adaptin N terminal region
      0.095   11.2   0.1       0.22   10.0   0.1    1.5  2  Mqo            Malate:quinone oxidoreductase (Mqo)
       0.14   11.4   0.1        1.2    8.3   0.0    2.1  2  FAD_binding_3  FAD binding domain
       0.15   11.1   0.1       0.15   11.1   0.1    2.3  3  GIDA           Glucose inhibited division protein A


Domain annotation for each model (and alignments):
>> FMO-like  Flavin-binding monooxygenase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   0.1     4e-40   4.5e-37       2     214 ..       7     217 ..       6     223 .. 0.90
   2 !   26.9   0.0   1.4e-09   1.6e-06     305     396 ..     243     338 ..     224     370 .. 0.72

  Alignments for each domain:
  == domain 1  score: 127.7 bits;  conditional E-value: 4e-40
    FMO-like   2 kkvaviGaGvsGlasikccleeg..leptcfersddiGGlwrfkenveeGrasiyksvvsnsskemscfsdfplpedypnflhnsklleylklfakefd 98 
                 +kva+iGaG  Gla+ +  le+   ++   fe+  +iGG+w + e+ +eGr  +y  + +n ske++ fs fp+ e+   f  ++ +++yl+ + k+f 
  CCD24004.1   7 RKVAIIGAGPGGLATTRVFLENTttFDIKIFEKDSQIGGVWYYPEDNKEGRV-MYDYLETNLSKELMQFSGFPFGEHIRKFPTRNDVYDYLRSYYKRFI 104
                 79******************9862268899********************96.8*******************************************96 PP

    FMO-like  99 llk...yiqfkttvcsvkkrpdfstsGqwevvtekegkkesavfdavmvctGhhvnphlplesfpGiekf..kGqyfhsrdykepevfkgkrvlviGlG 192
                 +      i f+  v+ +kk        +wev+ + e+  ++  fd v++ tGh+++p++p+   p +e++    + fh++d+++ e+ +gk ++viG G
  CCD24004.1 105 VNNervQIHFNNEVTGIKKVK-----NEWEVTIKDEE--DVLKFDYVVIATGHFTEPNIPK-GIPNLEHWftNKHAFHAKDFQNAEIARGKTIVVIGNG 195
                 654222799*********976.....58**9987765..6778*****************7.68999986223468*********************** PP

    FMO-like 193 nsggdiavelsrtaeqvllstr 214
                  sg+di  +ls  a++v+ s +
  CCD24004.1 196 SSGTDIRNQLSTVARKVYNSVN 217
                 *****************98765 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 1.4e-09
    FMO-like 305 ltetsaifedgtveedidvvifatGytfafpfleeslvkve.......knkvslykkvfpanlekptlaiiGliqplGsilptvelqarwavrvlkGlk 396
                  +  s+ +edg v +++d +i+atGy +afpf+ee ++          k    l+ ++f +    ptla   l+ ++   +p +elqa  +v+v+    
  CCD24004.1 243 WESRSIELEDGRVLKNVDYLIYATGYLYAFPFFEEKMKVELlgedrtsKGVHHLWEHLFYQ--PDPTLAF-SLLPTMVVPFPLAELQACVIVKVFTNKL 338
                 34456779***************************97543211111102233455555543..4678874.7888888889999999999999986544 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.3   1.6e-21   1.8e-18       2     274 ..      11     275 ..      10     291 .. 0.66

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 1.6e-21
  Pyr_redox_3   2 IiGaGPaGlaaaie.lkkagledylilEkg.nignsiyrypkemtfispsftsekleipdln.aiseetspafslkeeklsrkealeYlrevaksf.. 94 
                  IiGaGP Gla+    l++    d+ i Ek+ +ig  +y yp++++     +  + le+   +  +  +  p     ++ ++r+++ +Ylr++ k+f  
   CCD24004.1  11 IIGAGPGGLATTRVfLENTTTFDIKIFEKDsQIGGVWY-YPEDNKEGRVMY--DYLETNLSKeLMQFSGFPFGEHIRKFPTRNDVYDYLRSYYKRFiv 105
                  9*********98661566666799******77777776.999887533322..222222222022233446555667889999999888876554422 PP

  Pyr_redox_3  95 ...elpiklfeeVesvkkedegfevetske..tyeAkkviiAtGefdkPnkln.ipGeek.....lvkhyskvkefhkyagqkvvViGgknSavDaAl 181
                     +++i+ ++eV+ +kk +++ ev+ + e  +++ ++v+iAtG f  Pn ++ ip  e+     ++ h + +++++  +g+ +vViG + S+ D+  
   CCD24004.1 106 nneRVQIHFNNEVTGIKKVKNEWEVTIKDEedVLKFDYVVIATGHFTEPNIPKgIPNLEHwftnkHAFHAKDFQNAEIARGKTIVVIGNGSSGTDIRN 203
                  222899************999988877665559*****************9743776553331115566666667766779****************9 PP

  Pyr_redox_3 182 elvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsfl 274
                  +l     +V   +++ ++++  ++++  +   + +                     ik++ e+  ++ edg+ +++ d  ++atGy   + f+
   CCD24004.1 204 QLSTVARKVYNSVNDPSLSSPLDNFKD-IIELVPK--------------------IIKTNWESRSIELEDGRVLKNVDYLIYATGYLYAFPFF 275
                  999999998888887655544333322.2222222....................34444444455555566666666666666665555555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0   8.1e-19     9e-16       1     156 []      10     151 ..      10     151 .. 0.84
   2 ?   -1.7   0.0       2.2   2.5e+03       1      18 [.     190     207 ..     190     216 .. 0.82
   3 ?   -0.8   0.0       1.2   1.3e+03     132     155 ..     244     268 ..     234     269 .. 0.83

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 8.1e-19
  NAD_binding_9   1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvwrtdqseelllNvpasemslftddpptfaeWlrergaleeaeeldpddfvpRal 95 
                    ai+GaGp Gla+++ +l++   ++ ++i++f++ s++g g  +++++++e ++ +   e++l ++    + ++        e    + ++f++R  
     CCD24004.1  10 AIIGAGPGGLATTRVFLEN---TTTFDIKIFEKdSQIG-GVWYYPEDNKEGRVMYDYLETNLSKE----LMQFSGFPFG--E----HIRKFPTRND 91 
                    8******************...6**********66778.99999999999999999999887764....6666665541..2....4688****** PP

  NAD_binding_9  96 yGrYlrdlfeellarlpegvtvevh.raevvdleeradgqavlladg.aslaadaVvLAlGhl 156
                    + +Ylr+++++++ + +   +v++h ++ev+ +++ +++++v+ +d+ + l++d+Vv+A+Gh+
     CCD24004.1  92 VYDYLRSYYKRFIVNNE---RVQIHfNNEVTGIKKVKNEWEVTIKDEeDVLKFDYVVIATGHF 151
                    *************6553...56665599************99998872567***********5 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.2
  NAD_binding_9   1 aivGaGprGlavlerLla 18 
                    +++G G +G+ + ++L  
     CCD24004.1 190 VVIGNGSSGTDIRNQLST 207
                    69*******999888865 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.2
  NAD_binding_9 132 dgqavlladgasl.aadaVvLAlGh 155
                    +++ + l+dg+ l  +d+++ A+G 
     CCD24004.1 244 ESRSIELEDGRVLkNVDYLIYATGY 268
                    5678999*****989********96 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0     1e-17   1.1e-14       2     169 ..       8     213 ..       7     293 .. 0.69

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1e-17
                  SEEEE--SHHHHHHHHHHHH..HTS-EEEEE...............TTHCHH..HCSHHHHCHHHHHHHHHHHHH....................HHH CS
                  xxxxxxxxxxxxxxxxxxxx..xxxxxxxxx...............xxxxxx..xxxxxxxxxxxxxxxxxxxxx....................xxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaq..agakvtlve...............legtcl..nggcllskallgvaedaeias....................evv 60 
                  +v++iG+Gp+Gla+ +   +    +++ ++e               +eg ++  +    lsk+l ++++++  ++                       
   CCD24004.1   8 KVAIIGAGPGGLATTRVFLEntTTFDIKIFEkdsqiggvwyypednKEGRVMydYLETNLSKELMQFSGFPFGEHirkfptrndvydylrsyykrF-- 103
                  89***********998777746699*****666666667776666655555511455666888888888888777999****98885555554331.. PP

                  HCHHHHCCCCHCCTCEEEEESCEEEEETEEEC........TCEEEEEESEEEE---E..EE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-T..SEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxx..xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx RF
  Pyr_redox_2  61 kklnqgielllgeevvkidpgkkkvklekkke........gdeekiaydklvlAtGs..sprdl.gipGvaenvgklvrtldsaealklkllp..kri 145
                         ++ ++   v+i +++ +v+  kk++        ++e  +++d++v+AtG   +p+++ gip + e+++++ ++  +a+ ++ ++    k i
   CCD24004.1 104 -------IVNNE--RVQIHFNN-EVTGIKKVKnewevtikDEEDVLKFDYVVIATGHftEPNIPkGIPNL-EHWFTN-KHAFHAKDFQNAEIArgKTI 189
                  .......32222..55554444.44444444444555555677799**********54699999999999.999999.55555555666555569*** PP

                  EEES-SHHHHHHHHHHHHHT-EEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 146 vvvGgGyiGvElAaalaklgkevt 169
                  vv+G+G  G+++  +l+ ++ +v+
   CCD24004.1 190 VVIGNGSSGTDIRNQLSTVARKVY 213
                  ***********9999999988887 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.08        90     190     224 ..       5      39 ..       2      48 .. 0.64
   2 !   38.5   0.1   6.4e-13   7.1e-10      88     213 ..      82     208 ..      62     230 .. 0.84
   3 ?    0.3   0.0      0.28   3.1e+02     327     340 ..     255     268 ..     235     270 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.08
  K_oxygenase 190 akkriaVvGsGqSaaeifedllrrqkkvelklvtr 224
                  +++++a++G+G  +   ++  l++ ++ ++k++ +
   CCD24004.1   5 ERRKVAIIGAGPGGLATTRVFLENTTTFDIKIFEK 39 
                  56777777777776666666666666666665544 PP

  == domain 2  score: 38.5 bits;  conditional E-value: 6.4e-13
  K_oxygenase  88 letflpsRkefedYlrWvasql.....eeqvrfgeeveevepdeeeeeelltveskdaegeeeelearnlvlgvG..tepkiPevlekle...gkerv 175
                  + +++p+R++  dYlr   +++       q++f++ev+ ++ +++e    ++v+    ++ee+ l+   +v+++G  tep+iP+ + +le   ++++ 
   CCD24004.1  82 HIRKFPTRNDVYDYLRSYYKRFivnneRVQIHFNNEVTGIKKVKNE----WEVTI---KDEEDVLKFDYVVIATGhfTEPNIPKGIPNLEhwfTNKHA 172
                  55789999999999998888883321123599***********975....77887...5688999**********999********9999888789** PP

  K_oxygenase 176 vHsseylerkeellakkriaVvGsGqSaaeifedllrr 213
                  +H++++ + +   +++k+i+V+G G S+ +i ++l + 
   CCD24004.1 173 FHAKDFQNAE--IARGKTIVVIGNGSSGTDIRNQLSTV 208
                  ******9987..9******************9998765 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.28
  K_oxygenase 327 etlevdavvlATGY 340
                     +vd++++ATGY
   CCD24004.1 255 VLKNVDYLIYATGY 268
                  45789********* PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0039       4.3       1      35 [.       8      45 ..       8      48 .. 0.88
   2 !   21.4   0.0   1.4e-07   0.00016     144     207 ..      91     156 ..      60     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0039
                EEEEECTSHHHHHHHHHHHHTT....EEEEESSSSTTSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg....Vtllekgdiagsg 35
                +v+iiG+G  Gl+t +   +      + ++ek++++g g
  CCD24004.1  8 KVAIIGAGPGGLATTRVFLENTttfdIKIFEKDSQIG-G 45
                59**************9987746799*******9998.5 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 1.4e-07
                 EHHHHHHHHHHH..HHHTT-EEEESECEEEEEEEETCEEEEEEECTEEE.EEEEEEEE--GGGHH.HH CS
         DAO 144 dpakltaalara..aealGveilegtevtgleeedgkvwgverttpgen.daadavVnaaGawsd.ll 207
                 d + ++++++++  + +  v+i+++ evtg+++  +  w+v   +++e   ++d+vV+a+G+++   +
  CCD24004.1  91 DVYDYLRSYYKRfiVNNERVQIHFNNEVTGIKKV-KNEWEVT-IKDEEDvLKFDYVVIATGHFTEpNI 156
                 6789999999995334445************664.4569994.3334443467**********97665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0     1e-08   1.2e-05       1      47 [.      11      62 ..      11      86 .. 0.84
   2 ?   -2.7   0.0       6.3     7e+03      44      65 ..     351     372 ..     343     373 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1e-08
                   EE--SHHHHHHHHH.HHCC.TEEEEEE-SSSSSSGGG-EECETT...CEECT CS
  NAD_binding_8  1 IvGaGlsGlvaAyl.Laka.gfdvlllekrdrlGGraasyevpg...vrvdy 47
                   I+GaG +Gl++ +  L +   fd+ ++ek +++GG ++  e+++   v +dy
     CCD24004.1 11 IIGAGPGGLATTRVfLENTtTFDIKIFEKDSQIGGVWYYPEDNKegrVMYDY 62
                   9***********763666579*****************99994333566665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 6.3
                    EECTS---EEETTHHHHCHHHH CS
  NAD_binding_8  44 rvdygahifhgsgyypnvrrll 65 
                    r+     +  +++yy+++++ll
     CCD24004.1 351 RHGFSFATGEDIDYYRHLQALL 372
                    4444445555678999998886 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0022       2.4       2      36 ..       8      44 ..       7      45 .. 0.84
   2 !   15.9   0.0   3.7e-06    0.0042      97     168 ..      81     154 ..      57     158 .. 0.83
   3 ?   -3.5   0.1       2.9   3.2e+03       2      12 ..     188     198 ..     187     201 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0022
                 SEEEE--SHHHHHHHHHH..HHTT--EEEE-SSSSS- CS
  HI0933_like  2 dviviGgGaAGlmaAisa..akrgkrVlllekakklg 36
                 +v++iG+G+ Gl ++     +++  ++ ++ek +++g
   CCD24004.1  8 KVAIIGAGPGGLATTRVFleNTTTFDIKIFEKDSQIG 44
                 79**********9998886666777899999998887 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 3.7e-06
                  STTEEEETT.-CHHHHHHHHHH..HHHHT-EEE-S--EEEEECETTE.EEEEE..TTEEEEESEEEE----SS-G CS
  HI0933_like  97 dsgrlFpvsdkaedivdallke..lkeagvklrletevksvekeedgkfrvkt.kseeeleadklvlAtGGlSiP 168
                  ++ r Fp++++  d ++ + k+  +++++v+++ ++ev++++k +++  +v++ ++e+ l+ d++v+AtG    P
   CCD24004.1  81 EHIRKFPTRNDVYDYLRSYYKRfiVNNERVQIHFNNEVTGIKKVKNE-WEVTIkDEEDVLKFDYVVIATGHFTEP 154
                  67788888887777777777764458899************887777.999996788899**********77666 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.9
                  SEEEE--SHHH CS
  HI0933_like   2 dviviGgGaAG 12 
                  +++viG G +G
   CCD24004.1 188 TIVVIGNGSSG 198
                  689******99 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.17   1.9e+02       3      36 ..      18      52 ..      16      65 .. 0.84
   2 !   16.5   0.1   3.5e-06    0.0039     221     260 ..     108     148 ..      91     150 .. 0.91
   3 ?   -3.6   0.0       4.6   5.2e+03     241     260 ..     246     266 ..     237     267 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.17
                   HHHHHHHHHHTT..EEEEEEESSSSSBTTS-EEEET CS
  Amino_oxidase  3 GLaaArqLlsaG..fdVtvlEardrvGGRirtvrsd 36
                   GLa+ r  l++   fd+ ++E ++++GG ++ ++ d
     CCD24004.1 18 GLATTRVFLENTttFDIKIFEKDSQIGG-VWYYPED 52
                   99999999999999**************.6666655 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 3.5e-06
                    TTEEEETSEEEEEEEEETTCEEEEETTSTEE.EESEEEE-S CS
  Amino_oxidase 221 rgldirlntrVkeikregdgvtvtledgevv.eaDaVvvTv 260
                     +++i++n++V+ ik+ +++  vt++d e+v ++D+Vv+++
     CCD24004.1 108 ERVQIHFNNEVTGIKKVKNEWEVTIKDEEDVlKFDYVVIAT 148
                    6799**************************9********97 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 4.6
                    EEEEETTSTEE.EESEEEE-S CS
  Amino_oxidase 241 vtvtledgevv.eaDaVvvTv 260
                     +++ledg+v+ ++D+ + ++
     CCD24004.1 246 RSIELEDGRVLkNVDYLIYAT 266
                    456778999999999988875 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.6e-05     0.018      19      58 ..       8      47 ..       4      50 .. 0.88
   2 ?    0.1   0.0      0.35   3.9e+02      19      35 ..     188     204 ..     172     213 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.6e-05
                EEEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TTTT CS
        Thi4 19 DvvivGaGssGLtaayylakk.pdlkvailersvspGGGaw 58
                 v+i+GaG+ GL++++++ ++   + + i+e+   +GG +w
  CCD24004.1  8 KVAIIGAGPGGLATTRVFLENtTTFDIKIFEKDSQIGG-VW 47
                699*************99999899********988876.55 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.35
                 EEEEE--SHHHHHHHHH CS
        Thi4  19 DvvivGaGssGLtaayy 35 
                  +v++G GssG      
  CCD24004.1 188 TIVVIGNGSSGTDIRNQ 204
                 699********766555 PP

>> DUF5083  Domain of unknown function (DUF5083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.1e-05       0.1      80     143 ..     242     305 ..     227     312 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.1e-05
     DUF5083  80 qydqsnvelanrvkvtkvlsilymipglyaipfyfrflhvrsfrenkksgqpayhfwey.fikpd 143
                 +++   +el +   + +v  ++y    lya pf+   ++v  + e++ s +  +h+we+ f +pd
  CCD24004.1 242 NWESRSIELEDGRVLKNVDYLIYATGYLYAFPFFEEKMKVELLGEDRTS-KGVHHLWEHlFYQPD 305
                 566778999887777888899999999**************99998876.6899***97355665 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0      0.01        12      30      63 ..       5      37 ..       2      43 .. 0.82
   2 ?   -3.6   0.0       5.7   6.4e+03      97     110 ..     137     150 ..     125     152 .. 0.75
   3 ?    4.7   0.0     0.016        18      17     110 ..     172     268 ..     167     281 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.01
  Glu_dehyd_C 30 epesalvlGaGslGLLalalleaeerglervyvl 63
                 e++++ ++GaG+ GL ++ ++  ++++++ + ++
   CCD24004.1  5 ERRKVAIIGAGPGGLATTRVFLENTTTFD-IKIF 37
                 578899************99998888886.6665 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.7
  Glu_dehyd_C  97 aseemdlvvEaTGs 110
                     ++d+vv aTG+
   CCD24004.1 137 DVLKFDYVVIATGH 150
                  45689999999997 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.016
  Glu_dehyd_C  17 ielaeasrsafewepesalvlGaGslGLLalalleaeerg.lervy...vlgrrdrpdptidlveelGatYvdsretpvdeipeaseemdlvvEaTGs 110
                    +a+  ++a   + ++ +v+G+Gs G     +l++  r+ ++ v         d+ +  i+lv ++  t  +sr  ++++   + +++d+++ aTG+
   CCD24004.1 172 AFHAKDFQNAEIARGKTIVVIGNGSSGTDIRNQLSTVARKvYNSVNdpsLSSPLDNFKDIIELVPKIIKTNWESRSIELEDG-RVLKNVDYLIYATGY 268
                  5566666677778889999*******98777777665443144443110223345556678899999999999999999998.79999********98 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001      0.11     419     486 ..      59     126 ..      52     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
                 HCCTCCGXXSHHHHHHHHHHHHHTTTTXTT....HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXG CS
   Adaptin_N 419 LaellekieseearaaaiWllGeygelvsnte.sasdllrslaekfvlesekvklqiltalvKlyltsp 486
                 ++++le+  s+e+ +   + +Ge+  +++ t+ ++ d+lrs +++f+ ++e v+    ++ +  +++++
  CCD24004.1  59 MYDYLETNLSKELMQFSGFPFGEHIRKFP-TRnDVYDYLRSYYKRFIVNNERVQIHFNNEVTGIKKVKN 126
                 88999999999999999999*********.599********************9999888776666665 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       3.7   4.1e+03     421     439 ..       9      27 ..       5      40 .. 0.68
   2 ?   10.0   0.1    0.0002      0.22     185     224 ..      99     137 ..      88     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 3.7
         Mqo 421 aalLGasPGAstavsimle 439
                  a++Ga PG   ++++ le
  CCD24004.1   9 VAIIGAGPGGLATTRVFLE 27 
                 4677888877666666665 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0002
         Mqo 185 qllkalekkkgvelklkhevkdlkreedgkWkvkvkdlkt 224
                  + + + +++ v++++++ev+ +k+ ++ +W+v++kd+++
  CCD24004.1  99 YYKRFIVNNERVQIHFNNEVTGIKKVKN-EWEVTIKDEED 137
                 55566778899*************9988.8******8654 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0011       1.2       3      20 ..       8      25 ..       6      32 .. 0.87
   2 ?    0.5   0.0      0.25   2.7e+02     114     159 ..     107     145 ..      83     152 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0011
                   EEEEE--SHHHHHHHHHH CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallL 20
                   +V+I+GaGp Gl ++++ 
     CCD24004.1  8 KVAIIGAGPGGLATTRVF 25
                   79***********99875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.25
                    HHHHHTEEETCSEEEECCEECCCCCCCEEEECCTTEEEEEEEEEEE CS
  FAD_binding_3 114 haeerglqvrfktevesleqdeegvtaevrdketgeeetvrakYlv 159
                    +   + +q++f++ev+++++ +++ + +++d+e+     ++ +Y+v
     CCD24004.1 107 N---ERVQIHFNNEVTGIKKVKNEWEVTIKDEED----VLKFDYVV 145
                    4...559***********9999999999988863....45566666 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.6       2.2   2.4e+03       1      13 [.       8      20 ..       8      22 .. 0.86
   2 ?   11.1   0.1   0.00013      0.15      98     156 ..      97     156 ..      83     165 .. 0.87
   3 ?   -0.2   0.0      0.36   4.1e+02      74     149 ..     190     267 ..     170     294 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.2
                CEEEE-SSHHHHH CS
        GIDA  1 dviViGgGhAGce 13
                +v +iG+G  G++
  CCD24004.1  8 KVAIIGAGPGGLA 20
                699******9975 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00013
                 HHHHHHHHHTSTTEEE.EES-EEEEEECTTEEEEEEETTS-EEEECEEEE--TT-BT-EE CS
        GIDA  98 skevteklenepnlei.ieeeveeliveekkvkgvvtedgetikakavviatGtflkgki 156
                 ++++++ + n++ ++i +++ev+ ++  +++ ++ +++++ ++k + vviatG f + +i
  CCD24004.1  97 RSYYKRFIVNNERVQIhFNNEVTGIKKVKNEWEVTIKDEEDVLKFDYVVIATGHFTEPNI 156
                 56788899999999996699*****99999************************988666 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.36
                 EEEESTTS-CCC-EEEEEE-HHHHHHHHHHHHHT.STTEEEEES-EEEEEECTTEEEEEEETTS-EEEEC.EEEE--T CS
        GIDA  74 frilNrskGpavralraqvdrelyskevteklen.epnleiieeeveeliveekkvkgvvtedgetikak.avviatG 149
                 + i N s G  +r+    v r+ y++     l++  +n + i e v ++i ++ + + + +edg+++k+    + atG
  CCD24004.1 190 VVIGNGSSGTDIRNQLSTVARKVYNSVNDPSLSSpLDNFKDIIELVPKIIKTNWESRSIELEDGRVLKNVdYLIYATG 267
                 345566666666666666666666666666666544555556666666666667777777777777776546777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       541  (0.0301746); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3037.83
//
Query:       CCD24005.1  [L=776]
Description: hypothetical protein NDAI_0C03450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-24   85.6   0.9    2.8e-24   85.6   0.9    2.4  2  Fungal_trans  Fungal specific transcription factor domain
      4e-08   33.2  11.4    6.6e-08   32.5  11.4    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
       0.66   10.5   3.2         47    4.5   2.6    3.2  3  ParB          ParB family


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.5      0.29   1.7e+03     179     258 ..     193     261 ..     182     269 .. 0.54
   2 !   85.6   0.9   4.7e-28   2.8e-24       3     263 ..     333     575 ..     331     603 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.29
  Fungal_trans 179 sqinlpLPcddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveel 258
                   +q+ ++LP   ++ ++ ++  +  l             +a+ l   ++ ls+ ++sl  i +q q++d+ ++++  ++el
    CCD24005.1 193 HQMMTSLPPILNESENPTNPMGMSLTP-----------PATNLPVSSNQLSSKHSSLTPILSQIQEQDETFKQQITTNEL 261
                   444444554444444444444444433...........555555555566666666777777777766665555555444 PP

  == domain 2  score: 85.6 bits;  conditional E-value: 4.7e-28
  Fungal_trans   3 rffsnfhpqfpilhkpsflpkt.......ssenssksayasplll...lailalGalfsesetkesnssltsesqefiafplraeilihedfsspss 89 
                    +f++ h +fp+++k  fl++        s e++ ++ +  ++l+   ++i+a+G++ ++ +   +  ++++ s e++ ++l+ ++++   ++ + +
    CCD24005.1 333 AYFKHNHRLFPMIDKIAFLNDVskisdfeSLEKNIDTGSEYNILIfkiYMIMAIGCTTLRRAGMLN-VEEEDLS-EHL-SYLAMKKFS---YVIQLQ 423
                   7***************************87777777777777887889************999886.5555444.555.678888888...777777 PP

  Fungal_trans  90 slwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLP 186
                   +++++ +Llll +y++   + ++ + ++g+ +rl   lgL++    ++    + l++ e e+r R++w+a+++++++++ lGr + +dd++i++ LP
    CCD24005.1 424 NIETVRCLLLLGIYSFFEPRGSSSWTISGLIMRLTIALGLNKALTPKK---MKLLSAIEMEARNRVFWSAYCFERLVSTSLGRFSAIDDDEITIGLP 517
                   7*****************************************999999...78999999**************************99********** PP

  Fungal_trans 187 cddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveelerald 263
                         +e d+ +  + +                 + L ki + i+++++s++   q+ + + +k++ +e l+++ld
    CCD24005.1 518 RPLY-DGEKDEIEVTRTM-----------------IELRKIAGRIYKQVHSVSVSRQNLSIE-QKNKIIEGLSTELD 575
                   8877.5555555555444.................467777777777777777777777777.77777777776666 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5  11.4   1.1e-11   6.6e-08       2      36 ..      14      48 ..      13      52 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.1e-11
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfyses 36
                +C +Cr+ K KC ++ P+CsnC k n+eC++  + 
  CCD24005.1 14 SCSRCRRLKKKCLKEVPTCSNCMKANKECVYLGRA 48
                9*****************************55544 PP

>> ParB  ParB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.33     2e+03      21     102 ..     230     261 ..     224     286 .. 0.59
   2 ?    4.5   2.6    0.0078        47      24      86 ..     532     593 ..     525     608 .. 0.80
   3 ?    2.1   0.0     0.043   2.6e+02      56      95 ..     680     719 ..     677     729 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.33
        ParB  21 klekkdvelseliekvkeeiekvqsdtelaedeqkseilklikkeskrlkkpkkkdkavvekLaefedkkqfarkktkkRlv 102
                 +l++k+++l+ ++++++e+ e+ +++  ++                                                   +
  CCD24005.1 230 QLSSKHSSLTPILSQIQEQDETFKQQITTN--------------------------------------------------EL 261
                 555666666666666666555544444333..................................................33 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0078
        ParB  24 kkdvelseliekvkeeiekvqsdtelaedeqkseilklikkeskrlkkpkkkdkavvekLaef 86 
                  + +el ++  ++ ++++ v+   ++   eqk++i++ ++ e     ++++k+++  ++  + 
  CCD24005.1 532 RTMIELRKIAGRIYKQVHSVSVSRQNLSIEQKNKIIEGLSTELDGIYEKESKKMQ-LHNSKRL 593
                 566789999999********99999999***************999888888776.3333333 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.043
        ParB  56 seilklikkeskrlkkpkkkdkavvekLaefedkkqfark 95 
                 ++il ++ + s +l ++k   ++ ve L +f +k +fa++
  CCD24005.1 680 NTILYCLCQWSIDLIESKIEIQQCVEILQHFGEKWIFAKR 719
                 568888888888899999999999**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.22s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 5640.66
//
Query:       CCD24006.1  [L=399]
Description: hypothetical protein NDAI_0C03460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     6e-137  456.5   0.0   6.9e-137  456.3   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  456.3   0.0  3.8e-141  6.9e-137       1     340 [.      16     365 ..      16     367 .. 0.98

  Alignments for each domain:
  == domain 1  score: 456.3 bits;  conditional E-value: 3.8e-141
                   CCCS-EEETTEEESSSEEE----S-TTTTTCS.HHHHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EEE CS
  Oxidored_FMN   1 kLFkPikignmtLknRivmapmtrlraldkgnvledlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskvv 97 
                   +LFkPik+gn++L++R+vm+p+tr+ra+++gn+++d+a+eyysqr ++p+t+iite+af++p+sg +dnapgiw+eeq+++w+k+++++hen+s+v+
    CCD24006.1  16 NLFKPIKVGNTELQHRVVMPPLTRMRAHHPGNIPNDWAVEYYSQRTQRPGTMIITEGAFPSPQSGSYDNAPGIWSEEQMKQWKKIFDKIHENKSFVW 112
                   69*********************************************************************************************** PP

                   EEEE--GGGS..SCSTCEC....SS.ESSSSSTTT-.....S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT- CS
  Oxidored_FMN  98 vqlwhlGreakseyladqe..vdspsdpvaldaqee....esaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspksn 188
                   vqlw+lGr+  ++ la+++   d+psd v++d++ e    +s++++  + +tk+eikq+i+e+v+AAk++i+ g+DgVeih+anGYLlnqFl+p sn
    CCD24006.1 113 VQLWVLGRQGLADVLARDGlrFDGPSDGVYMDEETEarakKSNNPL--HGITKDEIKQYIKEYVQAAKNSIASGADGVEIHSANGYLLNQFLDPISN 207
                   ******************999*************999999999999..************************************************* PP

                   ---STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHH...HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCC..T CS
  Oxidored_FMN 189 krtDeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaet...aqkivllkelekrlkdgkklalvhaaeprkrgagsvrte..q 280
                   krtDeygGs+enRarF+levvdaV+ a+ge++vg+R+Sp++ ++k++ + +    aq++++++elekr+k+gk++a++h++ep +++ + ++ e  +
    CCD24006.1 208 KRTDEYGGSIENRARFTLEVVDAVVAAIGEDKVGVRFSPYGTFGKMSSGYDPtllAQYAYVIGELEKRAKAGKRIAYIHLVEPLVTNLFMTEGEgeY 304
                   ***************************************************99**************************************998888 PP

                   T.HHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTC CS
  Oxidored_FMN 281 e.kntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglp 340
                   + ++++fv+++wk+p+i++g+ a +++    + ++e++L+++gR f+a+pd+v++++kg +
    CCD24006.1 305 KdGTNDFVYSIWKGPIIRAGNLALNPQLVREMVKDERTLIGYGRFFIANPDIVDRVEKGQQ 365
                   8899**********************99999***************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3115.14
//
Query:       CCD24007.1  [L=227]
Description: hypothetical protein NDAI_0C03470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-83  279.5   4.3      2e-83  279.3   4.3    1.0  1  Erv26            Transmembrane adaptor Erv26
     0.0013   19.0   1.9     0.0013   19.0   1.9    1.7  2  DUF996           Protein of unknown function (DUF996)
  ------ inclusion threshold ------
      0.048   13.0   2.9      0.074   12.4   2.9    1.4  1  Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
       0.72    9.6   5.0       0.49   10.1   1.3    2.3  3  Cytochrom_C_asm  Cytochrome C assembly protein


Domain annotation for each model (and alignments):
>> Erv26  Transmembrane adaptor Erv26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.3   4.3   4.4e-87     2e-83       1     205 [.       1     205 [.       1     206 [. 0.93

  Alignments for each domain:
  == domain 1  score: 279.3 bits;  conditional E-value: 4.4e-87
       Erv26   1 mwilellsylglvlgflfltlaiasgLyYlsElvEEhtvlakrllkrliyaiiaiqvllllvdkfpltltllsivshvvylqnlrrfPvvkltdplfll 99 
                 m il+l+sylg ++gf+fltl+iasgLyY+sE+vEEht++++r+l+r+i +ii++ +lll++d+fp++ltl+si+shv+y++nl++fP+++l+ p+f+ 
  CCD24007.1   1 M-ILQLISYLGNIFGFVFLTLSIASGLYYISEIVEEHTEPTRRFLTRAIASIIILLFLLLVLDRFPVKLTLFSIASHVLYYRNLKKFPIISLSGPTFIS 98 
                 4.9************************************************************************************************ PP

       Erv26 100 scvlvvlnhylwfrhFskk....qarlkkessyykkkkdvpsfteiasffglcvWlvPfalfvsLsAgdnvLPtmgsesasgessssssese.kkkkkk 193
                 sc+ vvlnhylwf++F+++    q+r++++   y +++ +++fte+asff++c+W++PfalfvsLsA+d+vLPt+++ ++++ +++++++++ k kk++
  CCD24007.1  99 SCIAVVLNHYLWFKYFNNNeippQFRFDPN---YIPRR-RANFTEVASFFAICIWFIPFALFVSLSASDYVLPTTTEMDNKKFDTEADESVTpKLKKRT 193
                 ******************955555555555...66666.8**********************************99988887777766655559999** PP

       Erv26 194 kgllkavvdkvr 205
                  gl+++v++++r
  CCD24007.1 194 IGLARVVINGIR 205
                 **********98 PP

>> DUF996  Protein of unknown function (DUF996)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   1.9     3e-07    0.0013       3      96 ..      12     115 ..      10     118 .. 0.79
   2 ?   -2.2   0.0         1   4.5e+03      78      88 ..     144     154 ..     133     175 .. 0.51

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3e-07
      DUF996   3 ivGliLvlv....alkeiskavnd.ekifsnaliafilsiialvva.....ilalllvlgalatalelpgleeaaslilllllvliiayvlliisavfl 91 
                 i+G++++ +    +l+ is++v++  +  +++l+  i+sii l+++      + + l+l+++a+++ ++   + +++i+l+   +i   +++++  ++ 
  CCD24007.1  12 IFGFVFLTLsiasGLYYISEIVEEhTEPTRRFLTRAIASIIILLFLllvldRFPVKLTLFSIASHVLYYRNLKKFPIISLSGPTFISSCIAVVLNHYLW 110
                 77888776622336789*****862689*************9999989999899999999998877665555556699999999999999999999887 PP

      DUF996  92 kksye 96 
                  k ++
  CCD24007.1 111 FKYFN 115
                 77665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1
      DUF996  78 iiayvlliisa 88 
                 +++ + +i  a
  CCD24007.1 144 FAICIWFIPFA 154
                 22222222222 PP

>> Cyt_bd_oxida_II  Cytochrome bd terminal oxidase subunit II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.9   1.6e-05     0.074     151     266 ..       4     128 ..       1     175 [. 0.63

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.6e-05
  Cyt_bd_oxida_II 151 dllnpfallvglllvalflllGalylalktegelqerarrlalvlalvllvllvvvllwtlllvllllavlalllavlllrkkr.....eglaf 239
                      +l++    ++g+++++l +  G  y+   +e++ + + r l++++a ++++l+++++l  + + l l  +++ +l ++ l+k       +g  f
       CCD24007.1   4 QLISYLGNIFGFVFLTLSIASGLYYISEIVEEHTEPTRRFLTRAIASIIILLFLLLVLDRFPVKLTLFSIASHVLYYRNLKK-FpiislSGPTF 96 
                      5667777788999999999999888777776656655555666666666666666665543343334555555555554444.13444477899 PP

  Cyt_bd_oxida_II 240 lasaltvllvvlllavslfPyllpss.....l 266
                      ++s+++v+l  +l++ ++  + +p++      
       CCD24007.1  97 ISSCIAVVLNHYLWFKYFNNNEIPPQfrfdpN 128
                      99999999999999988877777777444442 PP

>> Cytochrom_C_asm  Cytochrome C assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.3   0.00011      0.49     121     150 ..       3      32 ..       1      61 [. 0.81
   2 ?   -0.2   0.1      0.16   7.1e+02     191     204 ..      51      64 ..      29     118 .. 0.64
   3 ?   -1.0   0.0      0.27   1.2e+03      37      54 ..     140     156 ..     129     175 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00011
  Cytochrom_C_asm 121 ldrlsyriiliGfvlltigiilGsvWaeea 150
                      l+ +sy   ++Gfv+lt++i +G ++ +e 
       CCD24007.1   3 LQLISYLGNIFGFVFLTLSIASGLYYISEI 32 
                      6678889999***************99765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.16
  Cytochrom_C_asm 191 lailgflllllayf 204
                      + il flll+l  f
       CCD24007.1  51 IIILLFLLLVLDRF 64 
                      22222222222222 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.27
  Cytochrom_C_asm  37 valiaalillgfalflll 54 
                      va+++a++++++ ++ l+
       CCD24007.1 140 VASFFAICIWFIPFA-LF 156
                      333333333322222.22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1637.71
//
Query:       CCD24008.1  [L=787]
Description: hypothetical protein NDAI_0C03480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-05   23.1   0.0    0.00015   21.6   0.0    1.8  1  RhoGAP        RhoGAP domain
  ------ inclusion threshold ------
      0.033   14.0   1.5       0.19   11.6   0.0    2.6  2  UBA_3         Fungal ubiquitin-associated domain
      0.073   13.3   4.9       0.46   10.7   4.9    2.4  1  Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
       0.21   11.3   3.1        3.3    7.5   0.0    3.4  3  DUF4116       Domain of unknown function (DUF4116)


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.3e-08   0.00015      36     126 ..     587     677 ..     569     696 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.3e-08
                 HHHHHTGGGCTTTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHH CS
      RhoGAP  36 eafdkgkavdsdleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeerlealkellekLPkenrdtLryLlehLkrvaensk 126
                 +a++k +++++   +  +++  +l+K++L elp+ L++ ++y++++++    + e   +   + +++LP+ n +++    +h+ ++++++ 
  CCD24008.1 587 KAIEKLTDTNHTNVNILINDWVGLIKLWLLELPNCLFSSSCYDNIMNIKIPITTESINSDSFNWMDELPPYNIKLILEFSKHFGWLTDHQV 677
                 344444444446677889999*************************75444444444456668899****************999999875 PP

>> UBA_3  Fungal ubiquitin-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.2e-05      0.19       6      30 ..     568     592 ..     563     601 .. 0.87
   2 ?    0.0   0.4      0.17   7.7e+02      35      55 .]     766     786 ..     764     786 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.2e-05
                 ---SHHHHHHHHHHT--HHHHHHHH CS
       UBA_3   6 yGidrdlVdefvsqGFekdkvievL 30 
                 + + r+l +ef + GF+  k ie L
  CCD24008.1 568 ANLRRELLEEFMNNGFDNKKAIEKL 592
                 56889*****************976 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.17
                 -SS--SS--HHHHHHHHHHT- CS
       UBA_3  35 iksldpednetankileELLk 55 
                 ik+ + +++++ + il+ LLk
  CCD24008.1 766 IKQGEEKKKKKVQSILNSLLK 786
                 67778889999*********8 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.9    0.0001      0.46      19      90 ..     125     194 ..     108     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0001
                   CCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  19 kkRgedkadvdelleldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleael 90 
                   k   +++  ++++ +  e++ e+++++e l ++ ++  k I++ kk++ d+e+ ++  +e++e++k  ++++
    CCD24008.1 125 K--TKYDYFIKDFKSTKEAMVECEKRTEMLSNQYKTFPKDIEEVKKQEHDKEDEVQGEDEVGEKIKVNDNRE 194
                   3..347788999*****************************************************9877765 PP

>> DUF4116  Domain of unknown function (DUF4116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.49   2.2e+03       9      33 ..     110     145 ..     107     152 .. 0.69
   2 ?    7.5   0.0   0.00074       3.3      10      31 ..     545     566 ..     542     568 .. 0.90
   3 ?    1.8   0.3     0.046     2e+02      11      28 ..     723     740 ..     717     745 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.49
     DUF4116   9 vkkngs...........alkylseeLknDkeivlkA 33 
                 +k+n +            + y+ +++k+ ke + ++
  CCD24008.1 110 LKRNEEflwvtenelktKYDYFIKDFKSTKEAMVEC 145
                 555555555555555556888889999999877666 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00074
     DUF4116  10 kkngsalkylseeLknDkeivl 31 
                 ++ g+ lk++  +++nD++++ 
  CCD24008.1 545 RSKGYLLKHVYQSWRNDIDLIR 566
                 6789***************985 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.046
     DUF4116  11 kngsalkylseeLknDke 28 
                 +n ++++++ e+Lkn +e
  CCD24008.1 723 SNKMIYEKFKEKLKNEIE 740
                 5789***********876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1236  (0.0689386); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5785.64
//
Query:       CCD24009.1  [L=489]
Description: hypothetical protein NDAI_0C03490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.1e-125  417.4   0.0   3.9e-125  417.0   0.0    1.1  1  6PGD            6-phosphogluconate dehydrogenase, C-terminal 
    4.8e-51  173.1   0.0    6.9e-51  172.5   0.0    1.2  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
  ------ inclusion threshold ------
      0.011   16.3   0.2      0.022   15.3   0.2    1.6  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
      0.074   13.3   0.0       0.28   11.4   0.0    2.0  2  NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobut
       0.15   11.5   0.0       0.33   10.3   0.0    1.6  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase


Domain annotation for each model (and alignments):
>> 6PGD  6-phosphogluconate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.0   0.0  1.1e-128  3.9e-125       1     289 []     178     475 ..     178     475 .. 0.97

  Alignments for each domain:
  == domain 1  score: 417.0 bits;  conditional E-value: 1.1e-128
        6PGD   1 GhyVKmvHNGieygdmqliaEaydllkkvlglsneeiaevFeeWnkgelesyLieitakilrkkdeedgkplvdkilDkagqkGTgkwtvqealelgvp 99 
                 GhyVKmvHNGieygdmqli+Eayd++k+v +++ +ei++vFe+Wnkg l+s+Lieit++il+ +d  dgkplv+ki+D+agqkGTgkwt+++al+lg+p
  CCD24009.1 178 GHYVKMVHNGIEYGDMQLICEAYDIMKRVGNFTDKEIGDVFETWNKGVLDSFLIEITRDILKFNDV-DGKPLVEKIMDTAGQKGTGKWTAINALDLGMP 275
                 9****************************************************************6.89****************************** PP

        6PGD 100 vptiaeavfaRllSslkeervkaskllkeeee..keeedkeefiedlrkAlyaskivsYaqglellkaaskeygwnlnlaeiariWrgGCiIrakfldk 196
                 v++i eavf+R+lS+ k+er++ask+l +++   +  +dk++f++dl++Alyaski+sYaqg++l+++a k+ygw+ln  +ia +WrgGCiIr+ fl +
  CCD24009.1 276 VTLIGEAVFSRCLSAIKNERIRASKTLVGPTIpkDLIKDKKQFVDDLEQALYASKIISYAQGFMLIREAGKTYGWKLNNPAIALMWRGGCIIRSVFLAE 374
                 ***************************655545588899************************************************************ PP

        6PGD 197 ikeafeknpelenllldpefakelkealealrrvvalaveagipvpalsaalaYldslrserlpanliqaqrDyFGahtyervdk........egkfht 287
                 i++a++++pelenll++++f++++++a++ +r+ +ala+++gip+pa+s+al+++d++rserlpanl+qaqrDyFGaht++   +        ++ +h+
  CCD24009.1 375 ITKAYREDPELENLLFHSFFSDAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPEaasetlpvDKDIHI 473
                 *********************************************************************************998878888888888899 PP

        6PGD 288 eW 289
                 +W
  CCD24009.1 474 NW 475
                 88 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.5   0.0   1.9e-54   6.9e-51       2     156 ..       5     171 ..       4     173 .. 0.96

  Alignments for each domain:
  == domain 1  score: 172.5 bits;  conditional E-value: 1.9e-54
                    EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT.....EEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHHSHCCC--TT-EEEE- CS
  NAD_binding_2   2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg.....akaaesieelvasl...dvvitmvkagkavdeviegllealkkgdilidg 89 
                    +g+iGl+vMG+n++ln +++g++v++ynrt +kve+++a++     + +a+sie+++a+l   ++v+++vkag++vd++i++l+++l+kgdi+idg
     CCD24009.1   5 FGLIGLAVMGQNLILNAADHGFTVVAYNRTVSKVENFLANEakgksIIGATSIEDFIAKLkrpRKVMLLVKAGAPVDALIKELVPHLEKGDIIIDG 100
                    89*************************************988999999************************************************ PP

                    S---HHHHHHHHHHHHHTT-EEEEEEEESHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHEE......EEEEE CS
  NAD_binding_2  90 stsspedtrelakelkekglkfldaPVSGGeegAekGtLsimvGGseeafervkpvleaiga......kvthv 156
                    ++s++ d++++++elke+g+ f++ +VSGGe gA+ G+ s+m+GG eea++++k+++++i+a      ++  +
     CCD24009.1 101 GNSHFPDSNRRYEELKEQGILFVGSGVSGGEDGARYGP-SLMPGGAEEAWPHIKNIFQSISAksdgepCCD-W 171
                    **************************************.**********************9676666665.5 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.2   6.1e-06     0.022       2      94 ..       5     100 ..       4     103 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.1e-06
                    EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.....-EEECECHHHHHH...H-SEEEE-S-HHH.HHHHHHHCGHHHHTT CS
  F420_oxidored   2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.....vkvtavdneeaae...eadvvvlavkped.veevlselakdalkg 88 
                    +g+iG   mg+ l+++++ +g     +v a +r+ +k+e + ++       +++t+   e+ ++   +   v l vk  + v+++++el +++ kg
     CCD24009.1   5 FGLIGLAVMGQNLILNAADHG---FTVV-AYNRTVSKVENFLANEAkgksiIGATS--IEDFIAklkRPRKVMLLVKAGApVDALIKELVPHLEKG 94 
                    699******************...8888.99********98744333676633333..3444432338888999999866488999********** PP

                    SEEEEE CS
  F420_oxidored  89 klvisv 94 
                     ++i+ 
     CCD24009.1  95 DIIIDG 100
                    ****95 PP

>> NAD_binding_11  NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.8e-05      0.28       1      32 [.     176     207 ..     176     232 .. 0.93
   2 ?   -3.0   0.0       2.4   8.5e+03      11      32 ..     324     345 ..     322     345 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.8e-05
  NAD_binding_11   1 GaGqavKlvnnlllainlaaasEalvlaekaG 32 
                     GaG+ vK+v+n +    +  ++Ea  ++++ G
      CCD24009.1 176 GAGHYVKMVHNGIEYGDMQLICEAYDIMKRVG 207
                     9************************9999988 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.4
  NAD_binding_11  11 nlllainlaaasEalvlaekaG 32 
                     ++l+a +++  + +++l + aG
      CCD24009.1 324 QALYASKIISYAQGFMLIREAG 345
                     8999999999999999998887 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   9.1e-05      0.33      39      77 ..       5      43 ..       2     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.1e-05
                  EEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHH CS
  2-Hacid_dh_C 39 vGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeee 77
                   G+iGl  +Gq+++  ++  g+ v+ay+r+ +k e++ +
    CCD24009.1  5 FGLIGLAVMGQNLILNAADHGFTVVAYNRTVSKVENFLA 43
                  79****************************998774433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3443.37
//
Query:       CCD24010.1  [L=548]
Description: hypothetical protein NDAI_0C03500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.052   14.7   1.0       0.21   12.7   0.1    2.6  2  DUF3484   Membrane-attachment and polymerisation-promoting sw


Domain annotation for each model (and alignments):
>> DUF3484  Membrane-attachment and polymerisation-promoting switch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.2e-05      0.21      26      67 .]      10      51 ..       2      51 .. 0.75
   2 ?   -3.7   0.1         1   1.8e+04      33      55 ..     472     492 ..     459     494 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
     DUF3484 26 enpqvqeqaqeqPvp.skeqeekepkkekltdrvkglFgnmFD 67
                ++p + +++++ P    +   +ke ++  ++++ k++ +++F+
  CCD24010.1 10 HTPLPFPDPPQYPLSsVQNLTQKEENG-SIVNKCKNILSSLFE 51
                444455777888887646667888799.**************7 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1
     DUF3484  33 qaqeqPvpskeqeekepkkeklt 55 
                 +++ +P  +++ ++++ k+  +t
  CCD24010.1 472 NVENKPS-NNAYSPSD-KSSSFT 492
                 3445554.44444444.333555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       966  (0.0538792); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3941.86
//
Query:       CCD24011.1  [L=250]
Description: hypothetical protein NDAI_0C03510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.3   0.3        1.1    9.5   0.0    2.2  2  DUF3110   Protein of unknown function (DUF3110)
       0.34   10.8   2.8       0.84    9.5   2.8    1.6  1  Prion     Prion/Doppel alpha-helical domain


Domain annotation for each model (and alignments):
>> DUF3110  Protein of unknown function (DUF3110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.11   9.9e+02       9      26 ..      68      87 ..      63      96 .. 0.71
   2 ?    9.5   0.0   0.00012       1.1      56      80 ..     192     216 ..     187     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.11
     DUF3110  9 gteneGihtlelkd..rnvv 26
                 ++ne+i+  ++++  +n +
  CCD24011.1 68 TSDNEAIYIQQMQNegSNNI 87
                5699***9888665335555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00012
     DUF3110  56 daeeieefcesagyelelveegell 80 
                 ++ee e+fc+++g+++ lv++++ll
  CCD24011.1 192 EEEEFENFCKKSGVQISLVSQEDLL 216
                 789****************988765 PP

>> Prion  Prion/Doppel alpha-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.8   9.3e-05      0.84      11      56 ..      70     115 ..      63     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 9.3e-05
                 HHHHHHHHHHGGGSTSCEEES-GCSTTSSHHHHHHHHHHHHHHHHH CS
       Prion  11 eyenryyeenyarypdqvyyrkyseanvtkevfvtdCvNitvtenq 56 
                 ++e+ y ++ ++  +++++y++ s+ +v+   fv++ +N+ +++  
  CCD24011.1  70 DNEAIYIQQMQNEGSNNIFYPERSQQEVPSYNFVKESTNVHHANCY 115
                 55788999999999**************************988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1902.75
//
Query:       CCD24012.1  [L=260]
Description: hypothetical protein NDAI_0C03520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-05   23.4   0.1    9.1e-05   22.7   0.1    1.3  1  Retrotrans_gag  Retrotransposon gag protein
  ------ inclusion threshold ------
        0.1   12.1   1.3       0.19   11.3   1.3    1.4  1  P53_TAD         P53 transactivation motif


Domain annotation for each model (and alignments):
>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1     1e-08   9.1e-05       2      78 ..      82     157 ..      81     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1e-08
  Retrotrans_gag   2 lastslegaAkswlkslvarsidasesWkdlkkaflktflpserkdqleeelsslrQgtesvreYvtrfktladqld 78 
                     + +++l+++A+ w+++ +++++  + s++++ + f ++f ++ +  ++ +el++l       +e +++fk+l++ l+
      CCD24012.1  82 FLVECLTDQALIWFDQAEKDQDLYALSYEEFVRIFTDHFTKEVDAFETFSELWNLGH-CANATEHAQKFKSLVSGLK 157
                     56899***************99999****************999999**********.8899999*******99887 PP

>> P53_TAD  P53 transactivation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.3   2.1e-05      0.19      12      20 ..     128     136 ..     128     136 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.1e-05
     P53_TAD  12 ETFsdLWkl 20 
                 ETFs+LW+l
  CCD24012.1 128 ETFSELWNL 136
                 9*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2022.36
//
Query:       CCD24013.1  [L=1263]
Description: hypothetical protein NDAI_0C03530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-31  107.9   0.1    9.2e-31  107.1   0.1    1.4  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    2.2e-28   98.2   0.0      6e-28   96.8   0.0    1.8  1  RT_RNaseH_2      RNase H-like domain found in reverse transcr
    4.6e-28   97.6   0.0      1e-27   96.5   0.0    1.6  1  RT_RNaseH        RNase H-like domain found in reverse transcr
    1.7e-17   63.3   2.4    1.7e-17   63.3   2.4    2.2  2  Integrase_H2C2   Integrase zinc binding domain
    2.2e-17   63.1   0.1      5e-17   62.0   0.1    1.5  1  Peptidase_A2B    Ty3 transposon peptidase
    1.3e-14   54.4   0.1    3.6e-14   53.0   0.0    1.8  2  rve              Integrase core domain
    3.9e-05   24.2   0.0    7.9e-05   23.2   0.0    1.5  1  Asp_protease_2   Aspartyl protease
    0.00022   21.4   1.1     0.0014   18.8   0.1    2.8  2  zf-H2C2          H2C2 zinc finger
  ------ inclusion threshold ------
      0.015   15.0   0.1      0.031   14.0   0.1    1.4  1  RVP_2            Retroviral aspartyl protease
      0.018   15.6   0.0      0.038   14.6   0.0    1.5  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.1   5.1e-34   9.2e-31       2     222 .]     344     501 ..     343     501 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 5.1e-34
                 E-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET. CS
       RVT_1   2 pKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvpt 99 
                  K++ gsyR+ +     dy+ lnk+++k         ++ ++p+ ++              l k ++a ++++lDl ++++++p++  +  +taf +p 
  CCD24013.1 344 TKHD-GSYRLcV-----DYRELNKVTVK---------DPFPLPHVDEL-------------LGKVGSASVFTTLDLHSGYHQIPMNPTDMDKTAFVTP- 413
                 6999.*****55.....***********.........***********.............8899*********************************. PP

                 ........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT--B CS
       RVT_1 100 klinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglki 198
                                         +g+ye++++p+G+v++P++f ++m +l+r+l+      ++ +Y DDili+s++ e++ +++++v ++l + +l  
  CCD24013.1 414 ------------------------TGKYEYTVMPFGLVNAPSTFARYMADLFRDLE------FVNVYLDDILIFSNDLESHWKHIDVVLSRLDQEKLIA 482
                 ........................9*******************************......79*********************************** PP

                 EGGG-EEE.....ESSEEETTEEE CS
       RVT_1 199 npeKtklvlftvkseevkyLGvtl 222
                 +++K++++     ++ev++LG+++
  CCD24013.1 483 KKKKCHFA-----QSEVQFLGYII 501
                 ********.....9*******986 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   3.3e-31     6e-28       1      99 [.     562     660 ..     562     661 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 3.3e-31
  RT_RNaseH_2   1 WteeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrhyllgrkf 98 
                  W++ q++af +lk+ l+s+p+L +++ d+++ l+tDaS  g+gavL    d++ + +++++S++l++++r+y+  e+el+Ai+++l++f+++l+g++f
   CCD24013.1 562 WGDLQDDAFATLKRDLMSEPLLVPFKRDAEYRLTTDASMDGLGAVLEEVADNKVLGVVSYYSKSLNETQRRYPPGELELMAIIEGLEHFKYMLHGKHF 659
                  99*************************************************988*******************************************9 PP

  RT_RNaseH_2  99 t 99 
                  +
   CCD24013.1 660 V 660
                  7 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   5.6e-31     1e-27       3     105 .]     589     691 ..     587     691 .. 0.97

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 5.6e-31
                 TS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS--EEEE-SS--TTTTT----.---HHHHHHH CS
   RT_RNaseH   3 skpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqgrkftvitDhknlkyllskkslngrlarWale 101
                 + ++ l+tDAs dg+gavL    +++   +++++S++l++++r+y+  e+el+Ai++ l++f+++l+g++f ++tDh +l +++++k+ ++r++rW+ +
  CCD24013.1 589 DAEYRLTTDASMDGLGAVLEEVADNKVLGVVSYYSKSLNETQRRYPPGELELMAIIEGLEHFKYMLHGKHFVLRTDHISLLSIQNQKEPARRVQRWLDT 687
                 57899****************999999*************************************************************99********* PP

                 C-XX CS
   RT_RNaseH 102 Lsey 105
                 Lse+
  CCD24013.1 688 LSEF 691
                 **98 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.4   2.5e+03      35      50 ..     531     546 ..     521     547 .. 0.80
   2 !   63.3   2.4   9.3e-21   1.7e-17       1      57 [.     812     871 ..     812     872 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.4
  Integrase_H2C2  35 WpgmrkdvkkyvksCe 50 
                     + gm +  +k++k C 
      CCD24013.1 531 FVGMINYYRKFIKDCS 546
                     56999999*******6 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 9.3e-21
  Integrase_H2C2   1 vpkslrkeilkeaHds...agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     vp+  r+ +++ +Hd+   +gH+G + t++++++ y+Wp+ +k+v++yvksC +Cq  k+
      CCD24013.1 812 VPHIRRPLVMETYHDHkwfGGHFGEHDTFKKISEIYFWPNCYKTVQDYVKSCIQCQVMKA 871
                     79999***************************************************9997 PP

>> Peptidase_A2B  Ty3 transposon peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.1   2.8e-20     5e-17      34     137 ..      87     190 ..      62     214 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 2.8e-20
  Peptidase_A2B  34 taektikikntkvktlfdsgsptsfirrdivellkleiyetpplrfrgfvatksavtseavtldlkvddlqitlaayvldkmdyqllignpilrry 129
                     +  +i  k   + +l+d+gspt fir d+v  l+l++ + p  r +g+v+   ++   a  ld+++++ + +++ayv d +  ++lig p ++r+
     CCD24013.1  87 VCIVNIGTKSRTLEALIDTGSPTHFIRSDVVTKLDLKTSQVPFRRVKGLVSDAITTCNTACRLDFRLENREFDICAYVTDIIKNDVLIGYPFVKRH 182
                    555567778888999********************************************************************************* PP

  Peptidase_A2B 130 pkllytvl 137
                    p l+ ++ 
     CCD24013.1 183 PSLMESIH 190
                    ***99885 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0        10   1.8e+04      21      36 ..     380     395 ..     370     396 .. 0.74
   2 !   53.0   0.0     2e-17   3.6e-14       9     117 ..     894    1001 ..     890    1003 .. 0.93

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 10
         rve  21 ggkayllvvvddfsrl 36 
                  g a +++ +d +s++
  CCD24013.1 380 VGSASVFTTLDLHSGY 395
                 446899*******976 PP

  == domain 2  score: 53.0 bits;  conditional E-value: 2e-17
         rve    9 qvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpgrpqd 104 
                  ++D+   ++  +  g+  + vv+d f+++++ +a+++ + ++ v+++l r+v +++g  p++++sD+   +ts+a+re+  +lgi++ ++   +pq+
  CCD24013.1  894 SMDFLtGIP-TTLAGWDMIMVVIDRFTKRAHFVACKKVNGSTGVFDALFRFVFSLHGF-PRTIVSDRDIRFTSNAYRELTDRLGIKLLMSTSNHPQT 988 
                  788884444.667779**********************9999***************8.************************************** PP

         rve  105 nGkvErfhrtlkd 117 
                   G  Er +rtl +
  CCD24013.1  989 DGQTERVNRTLNQ 1001
                  **********987 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   4.4e-08   7.9e-05       8      90 .]      97     178 ..      88     178 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.4e-08
  Asp_protease_2   8 kpvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrld.slklggltlknvpalvldlgeeidglLGmdf 90 
                     +++++l+DTG+ t +i++++++kl lk+++ +++++  +++ + ++    ++ +++l + ++ ++ a+v+d   + d+l+G++f
      CCD24013.1  97 RTLEALIDTGSPTHFIRSDVVTKLDLKTSQVPFRRVKGLVSDAITTCNTACRlDFRLENREF-DICAYVTD-IIKNDVLIGYPF 178
                     699**************************988766666666666665555555688888666.67778888.678999999987 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.77   1.4e+03      21      36 ..     129     144 ..     116     148 .. 0.80
   2 !   18.8   0.1   7.6e-07    0.0014       4      39 .]     832     867 ..     827     867 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.77
     zf-H2C2  21 wlgiketvseVissCk 36 
                 + + k +vs+ i++C 
  CCD24013.1 129 FRRVKGLVSDAITTCN 144
                 568899*********5 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 7.6e-07
     zf-H2C2   4 tHlGinkltallarkYhwlgiketvseVissCkaCq 39 
                  H+G+  + +++ + Y w++ ++tv++ ++sC +Cq
  CCD24013.1 832 GHFGEHDTFKKISEIYFWPNCYKTVQDYVKSCIQCQ 867
                 5**********************************9 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   1.8e-05     0.031      19     128 ..      85     193 ..      75     199 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
       RVP_2  19 pdvvlgtflvnsipatvLfdsGasHsFiskafvsklklkveaLstpllietPvgssvtakeicksveieiqgiefladlilLdlkdlDviLgmdWLskn 117
                 +dv + ++  +s  +  L+d+G    Fi   +v+kl lk++++ ++  ++  v++ +t+ + +  +  +++++ef +   + d+ + Dv++g  ++ ++
  CCD24013.1  85 EDVCIVNIGTKSRTLEALIDTGSPTHFIRSDVVTKLDLKTSQVPFR-RVKGLVSDAITTCNTACRLDFRLENREFDICAYVTDIIKNDVLIGYPFVKRH 182
                 67777777778999999******999*****************998.68899999999888888899*********999999********999988888 PP

       RVP_2 118 kanidcaekkv 128
                  + ++  +k++
  CCD24013.1 183 PSLMESIHKNI 193
                 87777766665 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   2.1e-05     0.038       7      92 .]      96     181 ..      90     181 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.1e-05
                      TEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEE.EEEE.EETTEEEEEEEEEESSSSEEEEHHHHHH CS
  gag-asp_proteas   7 gkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrld.svkiggielrnvsavvlegelddlLLGldfLkr 92 
                       +++++l+DTG  + +i ++++++l l++++ ++++  + ++  ++++ + ++   ++++ e+  + a+v++  ++d+L+G  f kr
       CCD24013.1  96 SRTLEALIDTGSPTHFIRSDVVTKLDLKTSQVPFRRVKGLVSDAITTCNTACRlDFRLENREFD-ICAYVTDIIKNDVLIGYPFVKR 181
                      5789**************************9875444444444445555555545666777664.6677777667888998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.81u 0.25s 00:00:01.06 Elapsed: 00:00:00.41
# Mc/sec: 9324.52
//
Query:       CCD24014.1  [L=1558]
Description: hypothetical protein NDAI_0C03540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-66  222.8   0.0    1.6e-66  222.8   0.0    2.7  2  Raptor_N         Raptor N-terminal CASPase like domain
    4.1e-06   26.6   0.0      0.086   13.2   0.0    4.9  4  HEAT             HEAT repeat
      5e-05   24.0   5.2       0.33   11.9   0.0    6.1  6  WD40             WD domain, G-beta repeat
    0.00024   21.1   0.2        0.6   10.2   0.0    3.3  3  BBS2_Mid         Ciliary BBSome complex subunit 2, middle reg
  ------ inclusion threshold ------
          1    8.4  23.2      0.015   14.4  12.9    2.4  2  AIP3             Actin interacting protein 3
        8.4    5.9  20.6       0.12   11.9   9.8    2.5  2  Exonuc_VII_L     Exonuclease VII, large subunit
        8.6    6.5   6.9         30    4.7   6.9    1.9  1  Cob_adeno_trans  Cobalamin adenosyltransferase


Domain annotation for each model (and alignments):
>> Raptor_N  Raptor N-terminal CASPase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.8   0.0   6.1e-70   1.6e-66       2     147 .]      81     232 ..      80     232 .. 0.97
   2 ?   -1.6   6.4       0.9   2.3e+03       3      78 ..     792     869 ..     790     879 .. 0.52

  Alignments for each domain:
  == domain 1  score: 222.8 bits;  conditional E-value: 6.1e-70
    Raptor_N   2 ktksvilvlclnigvdppdvvktkpcarleawidpss.e.....leeiaknlqdqyeslqlrarykqlldptvedvkklcqslrrnakdervlfHYnGh 94 
                 kt++++l+lcln gvdppdv+kt+pcarle w+dp++ +     +e+i+knlq+qye+l+lr rykq+ldp+vedvk++c++lrrn+k++r+lfHYnGh
  CCD24014.1  81 KTVNAALLLCLNLGVDPPDVIKTHPCARLESWVDPLDfQdskkaIEQIGKNLQSQYETLSLRCRYKQSLDPCVEDVKRFCNTLRRNSKTDRILFHYNGH 179
                 89***********************************84567777****************************************************** PP

    Raptor_N  95 gvprptengeiwvfdksytqyiplslaelqewlgspsiyifDCsnAglileaf 147
                 gvp+pt +geiwvf++ ytqyip+sl++lq+wlg+p+++++DC++Ag+i+++f
  CCD24014.1 180 GVPQPTPSGEIWVFNRGYTQYIPVSLYDLQNWLGAPCVFVYDCNSAGNIVTNF 232
                 **************************************************998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.9
    Raptor_N   3 tksvilvlclnigvdppdv.vktkpcarleawidpsseleeiaknlqdqyeslqlra..rykqlldptvedvkklcqsl 78 
                 t+s++++ ++  ++d+ ++ + +   +  + ++++  ++++ ++n+q+q +++q+++  +  q+ +++  ++++ ++++
  CCD24014.1 792 TASILTLRYFISDLDEAEIiI-RLQQEYSQQFQQLHAQMQHLQNNIQQQQQQQQQQQqaHQYQQFEQQQLKLEQQLNQC 869
                 556666666666666666633.333233344444444578899999998877433333444444444444444444443 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.13   3.3e+02       1      15 [.     598     612 ..     598     614 .. 0.91
   2 ?    1.3   0.0      0.22   5.6e+02       9      28 ..     698     717 ..     695     720 .. 0.89
   3 !   13.2   0.0   3.3e-05     0.086       2      28 ..     776     802 ..     776     805 .. 0.87
   4 ?    3.2   0.0     0.055   1.4e+02       4      26 ..     894     916 ..     892     920 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.13
                 HHHHHHHHHT-SSHH CS
        HEAT   1 llPlllkllsDpspe 15 
                 ++P +lkll++p+pe
  CCD24014.1 598 IFPYVLKLLQSPAPE 612
                 78**********997 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.22
                 HT-SSHHHHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLgala 28 
                 l+D+  e+ ++A+  L+ ++
  CCD24014.1 698 LNDTTDEQKAMAVFVLASFV 717
                 8***************9987 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 l +++k l Dp peVR a++++L  ++
  CCD24014.1 776 LQTIIKSLDDPVPEVRTASILTLRYFI 802
                 5689******************98665 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.055
                 HHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLga 26 
                  +l l++D sp VR+  ++ + +
  CCD24014.1 894 SILPLINDGSPLVRKEILLYFSQ 916
                 689999********988777666 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00013      0.33       9      37 ..    1253    1286 ..    1244    1287 .. 0.77
   2 ?   -1.0   0.1       1.5   3.8e+03      25      38 .]    1328    1340 ..    1323    1340 .. 0.73
   3 ?    4.9   0.3     0.021        53      22      38 .]    1368    1384 ..    1334    1384 .. 0.68
   4 ?   -1.1   0.0       1.7   4.3e+03      25      38 .]    1421    1434 ..    1402    1434 .. 0.68
   5 ?    1.0   0.0      0.36   9.1e+02      12      37 ..    1457    1482 ..    1440    1483 .. 0.78
   6 ?    1.4   0.0      0.26   6.7e+02      12      38 .]    1524    1551 ..    1514    1551 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                  SS.SS..EEEEE..EETTSSEEEEEETTSEEEEE CS
        WD40    9 GH.ss..vtsla..fspdgawlasGsdDgtvriW 37  
                  G  ++  +t+++  + +d+++l++Gs Dg v+i+
  CCD24014.1 1253 GNpFGskITDVKflNEDDQTLLLTGSSDGIVKIY 1286
                  55422469***988888888899**99******8 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.5
                  EEEEETTSEEEEEE CS
        WD40   25 lasGsdDgtvriWd 38  
                  la+G+  + +riWd
  CCD24014.1 1328 LATGD-VKIIRIWD 1340
                  55555.689****9 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.021
                  SSEEEEEETTSEEEEEE CS
        WD40   22 gawlasGsdDgtvriWd 38  
                  g+ +++G  Dgt+r++d
  CCD24014.1 1368 GDIFTAGFADGTLRVYD 1384
                  334667878******98 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.7
                  EEEEETTSEEEEEE CS
        WD40   25 lasGsdDgtvriWd 38  
                  l+s++ ++ v +Wd
  CCD24014.1 1421 LVSSTTNCVVQLWD 1434
                  777877*******9 PP

  == domain 5  score: 1.0 bits;  conditional E-value: 0.36
                  S..EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   12 s..vtslafspdgawlasGsdDgtvriW 37  
                  +   t+++++ + + +a+G   + ++iW
  CCD24014.1 1457 NttLTCMQVHEHAPVIATG--TKQIKIW 1482
                  15689**9999****9976..8999999 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.26
                  SEEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40   12 svtslafspdgawlasG.sdDgtvriWd 38  
                  + +slaf+p+  +la+  s D ++ i++
  CCD24014.1 1524 FLSSLAFHPHRMMLAANnSHDTNITIYN 1551
                  4789*********9852555*9999987 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.4   3.7e+03      17      41 ..    1168    1192 ..    1163    1201 .. 0.67
   2 !    6.9   0.0    0.0024         6       8      48 ..    1267    1307 ..    1262    1311 .. 0.90
   3 !   10.2   0.0   0.00024       0.6      15     102 ..    1327    1427 ..    1320    1436 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
    BBS2_Mid   17 vgsddfeirvfkeeelvaeitetek 41  
                  vgs+d++ r++++++  + i+et+k
  CCD24014.1 1168 VGSKDYNGRLWRRNRNEKIIQETQK 1192
                  7888888888776554444444444 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0024
    BBS2_Mid    8 dgdgeneLvvgsddfeirvfkeeelvaeitetekvvslarl 48  
                  ++d+++ L+ gs d  ++++++ + + ei+  +++ +l+++
  CCD24014.1 1267 NEDDQTLLLTGSSDGIVKIYRDFHSIEEIKLISACRALTDM 1307
                  56788999**************************9999987 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00024
    BBS2_Mid   15 Lvvgsddfeirvfkeeelvaeitetekvvslar.leker.....fayaleNGtvgvyek.......kerlWrvksknevvalaaydingdgtkeliv 98  
                  L++  d   ir+++  + + e+ + +k  sl++ l++++     f ++++ Gt+ vy++       + r Wr+   ++   + +++++  g++el+ 
  CCD24014.1 1327 LLATGDVKIIRIWDAHTETVEVDIPAKTSSLITsLTSDQlagdiFTAGFADGTLRVYDRrmdprdsMVRRWRAGDGSQGAWINNVQLQRGGYRELVS 1423
                  55555555678988887777776655554443213333344444*************8622222225799999999999999999999999999998 PP

    BBS2_Mid   99 gwsn 102 
                  +  n
  CCD24014.1 1424 STTN 1427
                  7665 PP

>> AIP3  Actin interacting protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   2.5      0.34   8.7e+02      99     162 ..     448     539 ..     423     550 .. 0.53
   2 ?   14.4  12.9     6e-06     0.015      54     159 ..     782     893 ..     772     911 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.34
                 X...........XXXXXXXXXXXXXXXXXXXXXXXX.............................XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        AIP3  99 i........esqkaslqevserqeeaakekasesla....................kkelkaqlkevqslrrdLavlrqlysefkseikesl 162
                          ++q++ +++  +rq+++++++++++++                    +++ ++ l+ vq+ + + ++ +q +++f+  ++++l
  CCD24014.1 448 SelenqlilQQQDNFQNSKPSRQQQQQQQRSESIQTqsrfavgnlstmslvnlpglNSRRQSTLAAVQHPQPQSHTQQQQQQQFTGFFEQNL 539
                 23333334433333333333333333333333222245566777777778888887666666666666666666666666666665555555 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 6e-06
                 XXXX.XXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXX CS
        AIP3  54 eLed.lsdvkdrsvLsLn........iepldevkkhideslaslskelkelkssiesqkaslqevserqeeaakekaseslakkelkaqlkevqslrrd 143
                  L+d + +v++ s+L+L+         e +  ++++ ++++++l++++++l+++i++q++++q+++  q+++ ++ ++++l   +l++ql++ q ++ +
  CCD24014.1 782 SLDDpVPEVRTASILTLRyfisdldeAEIIIRLQQEYSQQFQQLHAQMQHLQNNIQQQQQQQQQQQ--QAHQYQQFEQQQL---KLEQQLNQCQMMQSQ 875
                 5889999***********998887777788899999999999999999999999988888776633..3333333333333...466677777777766 PP

                 XXX..XXXXXXXXXXXXX CS
        AIP3 144 Lav..lrqlysefkseik 159
                 L+   lr+l+++  s ++
  CCD24014.1 876 LEKidLRKLKQQELSTLT 893
                 664224555555555444 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   3.0       0.5   1.3e+03     179     218 ..     465     515 ..     423     568 .. 0.44
   2 ?   11.9   9.8   4.6e-05      0.12     135     210 ..     808     887 ..     797     958 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.5
  Exonuc_VII_L 179 kspeellerkrqrldeleerleralkkq...........lkkkrerleelk 218
                   ++p+++ ++++qr ++++++ + a+ +             ++++++l  ++
    CCD24014.1 465 SKPSRQQQQQQQRSESIQTQSRFAVGNLstmslvnlpglNSRRQSTLAAVQ 515
                   122222222222222222222222111111122222221111111111111 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.6e-05
  Exonuc_VII_L 135 Aelvvpdkaeleeqleelerrlekaikrlleekkqrleklasrl....kspeellerkrqrldeleerleralkkqlkkk 210
                   Ae++++ ++e+ +q+++l++++++  ++  ++++q+ ++ + +     ++++ +le++ +++++++++le+   ++lk++
    CCD24014.1 808 AEIIIRLQQEYSQQFQQLHAQMQHLQNNIQQQQQQQQQQQQAHQyqqfEQQQLKLEQQLNQCQMMQSQLEKIDLRKLKQQ 887
                   66777777777777777766666655544443333333222111111133333555555555555555555333333322 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.9     0.012        30      29     106 ..     802     877 ..     798     894 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.012
                      HHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHHHS--EE CS
  Cob_adeno_trans  29 yGtvDelnsaiglarallaeeeeelkeaLeeiqneLfdlgaelatpekkkekkkiteeeveelekeideleaelpplk 106
                      + ++De++ +i l +++ + + ++l+++++++qn++ + +++   +++ +++++++++++ +le+++++++   ++l+
       CCD24014.1 802 ISDLDEAEIIIRLQQEYSQ-QFQQLHAQMQHLQNNIQQQQQQQQQQQQAHQYQQFEQQQL-KLEQQLNQCQMMQSQLE 877
                      6789********9997764.5689999999999999999999887788888888887755.78888776654444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1558 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3734  (0.208266); expected 358.6 (0.02)
Passed bias filter:                      830  (0.0462937); expected 358.6 (0.02)
Passed Vit filter:                       151  (0.00842211); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.49u 0.34s 00:00:01.83 Elapsed: 00:00:00.53
# Mc/sec: 8886.41
//
Query:       CCD24015.1  [L=304]
Description: hypothetical protein NDAI_0C03550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-78  263.2   0.2    3.9e-78  263.0   0.2    1.0  1  Elong_Iki1  Elongator subunit Iki1


Domain annotation for each model (and alignments):
>> Elong_Iki1  Elongator subunit Iki1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.0   0.2   2.2e-82   3.9e-78       1     298 []      11     287 ..      11     287 .. 0.94

  Alignments for each domain:
  == domain 1  score: 263.0 bits;  conditional E-value: 2.2e-82
  Elong_Iki1   1 LlsklLslrdsaSpLtLvlDsleqsakplleelirrak.ssktkvifvsfetlkkpkgvdvfieaterskklkelakeiksalspkssekkkkalviiD 98 
                 Ll+++Lsl +  +pL+L+lDs+ q+a++l++e++++ + + + + ifv+fetl+kp+++++fi+ +e+s  l +l+++++s+l+++++++++k lviiD
  CCD24015.1  11 LLKRILSLSEA-TPLLLCLDSIPQTANYLINEIVHHSRnTLNLETIFVAFETLNKPSYATHFIDINEVSGGLPKLIETLQSYLPSPQQKHSNKRLVIID 108
                 8**********.***********************9995679***************************99***********9777766689******* PP

  Elong_Iki1  99 slnplaslikeeslaaflssllsspsvslvavYHtdv........eyapspltlLkylAttiltve.slshelarkaardrsleepefgleeglegvlv 188
                 sln    +i++++la+f+s ++ sp+++lv+vYH+d+        +++ps+l+lL+++Attil+++ +l+++++++  ++ +le+ +++  +gl++ ++
  CCD24015.1 109 SLN----YIPNDKLAQFISAVA-SPHCTLVGVYHKDTpevdipalDNYPSSLELLQFMATTILNITpALPSRIDEE-SLKYELEKYSIP--RGLNNPIF 199
                 ***....9**************.5******************************************7788888555.99**********..******** PP

  Elong_Iki1 189 gegvvlelelRRkSGRavsekfvldsasheyeavkekee.eeeeaekevllledhpltakpeeeeeseapesTFnLgltekqrrdregvvLPyfdAQke 286
                 +    l+l +RR+SGR++s++f +d+++h ye+v +++e +e+e e++++l   ++lt              TFnL++++kq+ ++++v+LP+++AQ +
  CCD24015.1 200 N----LKLINRRRSGRSLSYDFQIDTNKHLYEHVINNPEeQENEIETPEML---QGLT--------------TFNLSTSTKQKMAKDQVALPFLEAQ-G 276
                 *....*****************************555554788888889**...***9..............*************************.8 PP

  Elong_Iki1 287 lgageGGrIlYe 298
                 l+ ++GG+I+Ye
  CCD24015.1 277 LE-SHGGAIVYE 287
                 87.9*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2018.20
//
Query:       CCD24016.1  [L=667]
Description: hypothetical protein NDAI_0C03560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.1e-186  618.8   0.0     1e-185  618.4   0.0    1.1  1  Gpi16     Gpi16 subunit, GPI transamidase component


Domain annotation for each model (and alignments):
>> Gpi16  Gpi16 subunit, GPI transamidase component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  618.4   0.0  5.8e-190    1e-185      14     554 ..      87     642 ..      78     647 .. 0.92

  Alignments for each domain:
  == domain 1  score: 618.4 bits;  conditional E-value: 5.8e-190
       Gpi16  14 aeeysEeLlLrpLpdskllasfeFesetsl..aefeaq........hfrlfPrslgqilqkanvrelhlrftqGrWdaeswgarplnglkeggtGvelw 102
                 +  ++E+L+++pLp++ ll+sf+F+++++    ++  +        hf++fP+++  +l+++++r+lhlrft+G+Wdae+wg+ p++g k+gg Gvelw
  CCD24016.1  87 SYPFREKLYVKPLPNNDLLTSFQFKMNSEEfaPSI--SslnygqynHFTVFPKAIESVLHRTDTRQLHLRFTRGFWDAETWGRLPHDGFKSGGNGVELW 183
                 5589*********************9998754222..123566788***************************************************** PP

       Gpi16 103 avleaetdeeadakwlkLtnaLsGlfCaslnfidstrttrPalsfqpegdhses......eklkllygslPrevvCtENLtpflkLLPckgkaGissLL 195
                 a++eae++++a +kw++L+n+LsGlfCas+nfids++tt P++sfqp +d+         ++l+l++++l +e++CtENLtpflkLLP+kgk+Gis+ L
  CCD24016.1 184 AIIEAESKDNAYSKWKTLANSLSGLFCASINFIDSSKTTYPVTSFQPDNDQGLPvfanskNQLYLIRAALANEPICTENLTPFLKLLPTKGKSGISTFL 282
                 ************************************************995433556667999************************************ PP

       Gpi16 196 dghklfdasyqsmsidvrpvceeeeseckleleqtidlvldverskrkrdnpiprptpadelkCdtsk........PldkaeeqewsLeelFgrklkga 286
                 dghk+fd+s++s+s+dv ++c+ ++++ck+e + ++d+v  v  s  +++npip+p pa++l+Cdt k        Pl + +e+e++L+++Fg+++kg+
  CCD24016.1 283 DGHKVFDSSWHSLSVDVITNCDVNQDKCKYETDAVVDMVTHVPYSLARNKNPIPKPLPAEQLRCDTNKpydafqcfPLPESTETEFDLSQIFGKTIKGS 381
                 *************************************************************************************************** PP

       Gpi16 287 cpl.....evclevaksskvyvqrkaseeakeakkedesskallsykleeekefdlaltskeaskeapl.eepllyaersltgsgqerGglqiiltnps 379
                  ++     ++c  + ++++v ++    +e        ++     +++l+  +e+dl l s+++s++++l ee +l+++rsltg+gq++Ggl+++++np+
  CCD24016.1 382 SMMsdipsHICAIITSKWDVSIK--VNGELF-----GTDD---NCFELDGMDEYDLYLASSDTSDVTTLnEEVPLHVSRSLTGYGQDHGGLRTVFQNPT 470
                 ***88876699999******993..444444.....3333...69***9999*********9997777757899************************* PP

       Gpi16 380 aseevefvyfeslPWfvrvylhtLkvelddkaekksesevikelyyrPaldrkrptqlelllelPaestvvltydfekaiLryteYpPDAnrGfdiaaA 478
                    +++++yfeslPW++r+yl++Lk+e  d+ ++ + ++vi+++yy+ a+d krp++le ++++Pa++t++++ +f+ka+L++++YpPDAn+Gf+i++A
  CCD24016.1 471 -PMPITAIYFESLPWYMRLYLSSLKLESIDS-SNLQLEDVIDSVYYNSAIDHKRPSHLEYTITIPANTTLAISCQFDKALLHFADYPPDANHGFEIESA 567
                 .77***********************99998.7999*************************************************************** PP

       Gpi16 479 vitvleeksseavelrttslLlsLptPDfSMPYNViiltsTvlaLafGslfnlltrrfvaeeeaee..kskkslkakl 554
                 vitv+++ +   +++rt++lLlsL tPDfSMPYNVii+tsTv+ L++G+l+nll++++v++e+a++  +++++lk+kl
  CCD24016.1 568 VITVIKPFK---YQIRTETLLLSLSTPDFSMPYNVIIITSTVIGLIYGTLYNLLVKKVVRVEQADKliEQQAGLKKKL 642
                 *****9887...8*********************************************88888776213444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4563.11
//
Query:       CCD24017.1  [L=972]
Description: hypothetical protein NDAI_0C03570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-10   40.7   0.3        2.1    8.9   0.0    7.5  8  HEAT_EZ        HEAT-like repeat
    2.9e-09   37.2   0.0       0.17   12.3   0.0    7.4  9  HEAT_2         HEAT repeats
      6e-09   36.0   8.5      0.034   14.0   0.0    5.6  5  DUF3385        Domain of unknown function (DUF3385)
      5e-07   29.2   0.6        1.1    8.2   0.0    4.7  4  MMS19_C        RNAPII transcription regulator C-terminal
    1.2e-06   28.3   8.1        3.4    8.2   0.0    8.7  9  HEAT           HEAT repeat
    1.2e-06   29.0   0.3      0.058   14.0   0.1    5.1  6  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
     0.0018   17.9   0.6       0.97    9.0   0.0    4.6  6  NUC173         NUC173 domain
  ------ inclusion threshold ------
      0.013   15.1   3.8        1.8    8.1   0.0    3.8  4  CLASP_N        CLASP N terminal
      0.023   14.9   8.4        1.1    9.4   0.0    5.7  7  ParcG          Parkin co-regulated protein
      0.032   14.3  11.5        2.7    8.0   0.5    5.5  6  Cnd1           non-SMC mitotic condensation complex subunit 1
       0.13   11.9   0.0       0.32   10.6   0.0    1.7  1  Autophagy_C    Autophagocytosis associated protein C-terminal


Domain annotation for each model (and alignments):
>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.3   3.8e+03      27      52 ..     165     190 ..     145     191 .. 0.83
   2 ?    1.1   0.0      0.36   5.9e+02      16      46 ..     236     262 ..     217     264 .. 0.57
   3 ?    4.9   0.0     0.024        39      24      55 .]     352     383 ..     345     383 .. 0.91
   4 ?   -1.6   0.0       2.6   4.2e+03       8      34 ..     418     445 ..     415     457 .. 0.77
   5 !    8.9   0.0    0.0013       2.1      20      51 ..     594     625 ..     581     629 .. 0.82
   6 !    8.7   0.0    0.0016       2.5      16      54 ..     674     712 ..     661     713 .. 0.85
   7 ?    0.5   0.0      0.57   9.2e+02      33      55 .]     733     755 ..     732     755 .. 0.90
   8 ?    4.7   0.0     0.027        44       3      48 ..     814     859 ..     812     865 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.3
     HEAT_EZ  27 peilpaLlalLnddsdeVRaaAagaL 52 
                 +++l  Ll   ++ +++ R+aA ++L
  CCD24017.1 165 ERALLVLLLKIKNGNAASRKAAMRTL 190
                 56677778888889999999999998 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.36
     HEAT_EZ  16 ggepellqplvpeilpaLlalLnddsdeVRa 46 
                 ++ ++++++ + ++ p+L+    d++++ R+
  CCD24017.1 236 AETKPYVHQILVVVSPLLI----DEDPMART 262
                 4455556655556666666....55446687 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.024
     HEAT_EZ  24 plvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 p++ ei+ + + +L d++ +V+  +a +L+ l
  CCD24017.1 352 PYLAEIVECIGDGLLDEHTPVKIMTANTLASL 383
                 8999************************9875 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2.6
     HEAT_EZ   8 awaLGr.laggepellqplvpeilpaLl 34 
                 + aLG+ ++ + p++   + +e+++   
  CCD24017.1 418 LKALGSiIPLMDPDYAGYYTEEVMRIVR 445
                 5699999999999999999999997655 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.0013
     HEAT_EZ  20 ellqplvpeilpaLlalLnddsdeVRaaAaga 51 
                   ++p++++i+   l+lL+++s++ R+ Aa  
  CCD24017.1 594 TRMKPFLSAIISTILNLLKHKSQLARQIAADL 625
                 6799*************************965 PP

  == domain 6  score: 8.7 bits;  conditional E-value: 0.0016
     HEAT_EZ  16 ggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 ++  e +qp + +ilp L + L++ + +V+  ++  +g 
  CCD24017.1 674 VMDIEKIQPPINQILPTLTPILRNTHRKVQVSTIKLIGC 712
                 6667889***********************999988886 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 0.57
     HEAT_EZ  33 LlalLnddsdeVRaaAagaLgnl 55 
                 Ll lL++ ++++R  A  ++g +
  CCD24017.1 733 LLELLKSTNKAIRRSANSTFGEI 755
                 899*************9999976 PP

  == domain 8  score: 4.7 bits;  conditional E-value: 0.027
     HEAT_EZ   3 vRraAawaLGr.....laggepellqplvpeilpaLl.alLnddsdeV.RaaA 48 
                 v+++++ aL +     + + +++    +v +ilp+L  al   d d+V R++A
  CCD24017.1 814 VQNGVLKAL-AfmfeyIGELAGD----YVYVILPLLEdALI--DRDLVhRQTA 859
                 666666666.3333333334444....55566666664444..8****99998 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.5   2.5e+03      40      59 ..     173     198 ..     147     237 .. 0.59
   2 ?    4.8   0.0     0.023        37      21      81 ..     268     333 ..     246     339 .. 0.78
   3 ?   -0.1   0.0      0.76   1.2e+03      11      32 ..     367     388 ..     353     458 .. 0.63
   4 ?    1.0   0.0      0.35   5.7e+02      33      58 ..     521     546 ..     511     578 .. 0.66
   5 ?   -1.4   0.0       1.9   3.1e+03      32      53 ..     603     624 ..     592     638 .. 0.84
   6 ?    3.7   0.0      0.05        82      22      58 ..     675     713 ..     669     723 .. 0.81
   7 !   12.3   0.0    0.0001      0.17       1      75 [.     688     776 ..     688     786 .. 0.75
   8 !    8.8   0.0    0.0013       2.1       4      83 ..     765     859 ..     763     864 .. 0.67
   9 ?   -3.5   0.0         9   1.5e+04      10      51 ..     893     936 ..     883     939 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.5
      HEAT_2  40 l..ededpavRraaaeaLg....aig 59 
                 l  ++ ++a R+aa ++L     ++g
  CCD24017.1 173 LkiKNGNAASRKAAMRTLTdkclEFG 198
                 33344555556666666543333333 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.023
      HEAT_2  21 iraLg.rignpealpaLvellededpavRraaaeaLg....aigdpealpaLkellddddddvvRe 81 
                 i +L+  +g  + + +L+  +++ed+++R    ++++     +g p  lp+Lk+ ++++++++ R 
  CCD24017.1 268 ISNLAsACGLGTMITTLRADIDNEDEYIRNITSRTMAvvtkSFGVPNMLPFLKAVCHSTRSWRARH 333
                 555553345556677777888899999999999999866667899***************999886 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.76
      HEAT_2  11 dpdpevrraairaLgrignpea 32 
                 d+++ v+++++ +L+++++++a
  CCD24017.1 367 DEHTPVKIMTANTLASLAETSA 388
                 5555555555555555555533 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.35
      HEAT_2  33 lpaLvellededpavRraaaeaLgai 58 
                 ++ L++ l++e +  R +a++a+ ++
  CCD24017.1 521 VENLLQPLKNEAEPFRIMAIHAINRV 546
                 67777778888888888888888754 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.9
      HEAT_2  32 alpaLvellededpavRraaae 53 
                 ++ ++++ll++++   R+ aa+
  CCD24017.1 603 IISTILNLLKHKSQLARQIAAD 624
                 6778899999999999988886 PP

  == domain 6  score: 3.7 bits;  conditional E-value: 0.05
      HEAT_2  22 raLgrignp..ealpaLvellededpavRraaaeaLgai 58 
                 + + +i++p  ++lp+L+++l+++++ v+   ++ +g i
  CCD24017.1 675 MDIEKIQPPinQILPTLTPILRNTHRKVQVSTIKLIGCI 713
                 5566777777799****************9999988855 PP

  == domain 7  score: 12.3 bits;  conditional E-value: 0.0001
      HEAT_2   1 ldaLlqalendpdpevrraairaLg...rignp...........ealpaLvellededpavRraaaeaLgai....gdpealpaLkelldddd 75 
                 l++L  +l +  + +v+  +i+ +g   r   +           ++   L+ell++++ a+Rr a  + g+i    g +++l aL+  l+  +
  CCD24017.1 688 LPTLTPIL-RNTHRKVQVSTIKLIGciaR---RapsyvspkewmRICFELLELLKSTNKAIRRSANSTFGEIakaiGPQDVLIALLNNLKVQE 776
                 57899999.89999***********7752...22235666755666667777779**************966433378999999988876544 PP

  == domain 8  score: 8.8 bits;  conditional E-value: 0.0013
      HEAT_2   4 LlqalendpdpevrraairaLg......rignpealpaLvellededpavRraaaeaLgai........gdpe...alpaLkellddddddvvReaA 83 
                 L+++l n + +e + +++ a +      ++g+ ++lpaL +  ++++++v+  + +aL+ +        gd      lp+L+++l d +d v R+ A
  CCD24017.1 765 LIALLNNLKVQERQLRVCTAVAigivaeTCGPYTVLPALMNEYKTPETNVQNGVLKALAFMfeyigelaGD-YvyvILPLLEDALID-RDLVHRQTA 859
                 666664433333344666655555888889999*************************9765555333322.133367888888874.666666655 PP

  == domain 9  score: -3.5 bits;  conditional E-value: 9
      HEAT_2  10 ndpdpevrr.aairaLg.rignpealpaLvellededpavRraa 51 
                 ++p+  vr  + +++Lg +ig+  ++++L   l ++   vR+a 
  CCD24017.1 893 TSPHVIVRVlEGLESLGtTIGPGVYMNYLWGGLFHPAKSVRKAF 936
                 45555555445666666556666777777777777777777765 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.1e-05     0.034      62     131 ..     177     247 ..     151     263 .. 0.84
   2 ?   -3.1   0.0         4   6.5e+03     123     157 ..     392     425 ..     370     428 .. 0.73
   3 !    7.9   0.5    0.0017       2.8      69     155 ..     544     628 ..     495     634 .. 0.73
   4 !   12.7   0.2   5.3e-05     0.086     105     150 ..     662     707 ..     637     715 .. 0.83
   5 ?    0.6   0.0      0.29   4.8e+02      84     132 ..     796     843 ..     764     864 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.1e-05
     DUF3385  62 aaretdlsllmvglspsneeyyptvvinaLlrilkdpsls.shhaavveaimnifktlglkcvpfLdqiip 131
                 + ++ + +++m +l+    e+ p+ ++n +l il d++l+ + ++ ++++i  i+ +lg +  p+++qi+ 
  CCD24017.1 177 NGNAASRKAAMRTLTDKCLEFGPKLIFNHILPILLDKTLEdQERHLMIKVIDRILFKLGAETKPYVHQILV 247
                 444556667788998888**********************7888999*********************986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4
     DUF3385 123 vpfLdqiipallsvirtteesnlrefllqqLatLv 157
                 ++  + ++  l + irt ++ +++ ++l++L++++
  CCD24017.1 392 IEAFNYVLEPLWKGIRTHRS-KVLAVFLKALGSII 425
                 45667788888899997665.89999999998887 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0017
     DUF3385  69 sllmvglspsn.eeyyptvvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLat 155
                 ++++++l +++  e  +t  i aLl  +++++  ++   v +   ++  +l++++ pfL+ ii+++l+++++ ++   r+   +  a+
  CCD24017.1 544 NRVVKQLGTAElSERQETRLIDALLIAFQEQK--NYDPIVYQGFGTVALSLNTRMKPFLSAIISTILNLLKHKSQ-LARQIAADLCAI 628
                 44455555666666667777777777776554..56677777788999999999*****************8766.444444444444 PP

  == domain 4  score: 12.7 bits;  conditional E-value: 5.3e-05
     DUF3385 105 aavveaimnifktlglkc.vpfLdqiipallsvirtteesnlrefll 150
                  ++++ai+ni++ ++++   p ++qi+p+l  ++r+t++ +++ + +
  CCD24017.1 662 GSIITAILNIVSVMDIEKiQPPINQILPTLTPILRNTHR-KVQVSTI 707
                 5799************99899***************998.7776665 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.29
     DUF3385  84 ptvvinaLlrilkdpslsshhaavveaimnifktlglkcvpfLdqiipa 132
                 p +v+ aL++  k p  +  +++v++a+ ++f+ +g     ++  i+p 
  CCD24017.1 796 PYTVLPALMNEYKTPETN-VQNGVLKALAFMFEYIGELAGDYVYVILPL 843
                 567888999999999855.889999999999999988888888777775 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0007       1.1     330     403 ..     395     468 ..     393     481 .. 0.94
   2 !    8.1   2.7   0.00079       1.3     222     411 ..     543     723 ..     500     736 .. 0.80
   3 ?   -2.2   0.0         1   1.6e+03     278     307 ..     727     757 ..     722     769 .. 0.86
   4 ?    2.9   0.0     0.029        47     332     383 ..     798     848 ..     797     881 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0007
     MMS19_C 330 FstvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksile 403
                 F++vl  l +g+++  s+  +++L AL +++  + +++   + ++++ ++ +  + pd+e+k+ +L +l+  ++
  CCD24017.1 395 FNYVLEPLWKGIRTHRSKVLAVFLKALGSIIPLMDPDYAGYYTEEVMRIVRREFNSPDDEMKKVVLLVLQKCCQ 468
                 9********************************************************************98887 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00079
     MMS19_C 222 vNKflkdedlselldellesieeslie......aedsqerkaaleiliwitKALvlRghplatelldkLlelLsedaelgqlvakafgvlvsddevvls 314
                 +N+ +  ++l ++  el+e+ e+ li+      +e+++ +++  +   +++  L  R +p  + ++++ l+lL+++++l++++a  +  ++++  v   
  CCD24017.1 543 INRVV--KQLGTA--ELSERQETRLIDalliafQEQKNYDPIVYQGFGTVALSLNTRMKPFLSAIISTILNLLKHKSQLARQIAADLCAILIP--V--- 632
                 67777..344433..45555555555555556999999999999999999999999******************9999999999999999999..7... PP

     MMS19_C 315 kknhanirlLykQrfFstvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksileespslvse 411
                  kn +   +L      +++   l e+  +  ++      +A+ ++++ +  + + p ++++lP+L   L  + ++v+ st++ +  i++ +ps vs+
  CCD24017.1 633 IKNCNELEML------NKLNIILYESLGEIYPDVLGSIITAILNIVSVMDIEKIQPPINQILPTLTPILRNTHRKVQVSTIKLIGCIARRAPSYVSP 723
                 4555555555......455666667777777889999999999999999999999999999999999999999999999999999999988888876 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1
     MMS19_C 278 telldkLlelLs.edaelgqlvakafgvlvs 307
                 ++++ +LlelL+ +++++++++ + fg +++
  CCD24017.1 727 MRICFELLELLKsTNKAIRRSANSTFGEIAK 757
                 788999*****99999999999999999876 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.029
     MMS19_C 332 tvlpklvegfkssdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaL 383
                 tvlp l++++k+ + + ++ +L AL+ + + +  +l   +   +lPlL +aL
  CCD24017.1 798 TVLPALMNEYKTPETNVQNGVLKALAFMFEYIG-ELAGDYVYVILPLLEDAL 848
                 79************************9998884.577777777777777776 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       8.2   1.3e+04       3      26 ..     317     341 ..     316     342 .. 0.65
   2 ?    2.0   0.0      0.19   3.2e+02       7      29 ..     363     385 ..     357     387 .. 0.83
   3 ?   -3.0   0.0       7.9   1.3e+04      14      28 ..     411     425 ..     399     427 .. 0.69
   4 ?   -1.2   0.0       2.2   3.6e+03       5      30 ..     524     549 ..     520     550 .. 0.77
   5 ?    4.5   0.2     0.032        52       1      29 [.     603     631 ..     603     633 .. 0.88
   6 ?    0.3   0.0      0.69   1.1e+03       1      28 [.     687     714 ..     687     716 .. 0.93
   7 !    8.2   0.0    0.0021       3.4       5      29 ..     733     757 ..     732     759 .. 0.94
   8 !    6.4   0.1    0.0075        12       1      31 []     840     870 ..     840     870 .. 0.93
   9 ?    0.2   0.0      0.76   1.2e+03       2      21 ..     918     937 ..     918     940 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 8.2
                 HHHHHHHT-.SSHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsD.pspeVReaAakaLga 26 
                 P+l   +++  s++ R + +k++ +
  CCD24017.1 317 PFLKAVCHStRSWRARHTGIKTFLQ 341
                 5555545446889999888887765 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.19
                 HHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgalae 29 
                   l D++  V  ++a++L+ lae
  CCD24017.1 363 DGLLDEHTPVKIMTANTLASLAE 385
                 56779****************98 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 7.9
                 HHHHHHHHHHHHHHH CS
        HEAT  14 peVReaAakaLgala 28 
                 ++V +  +kaLg ++
  CCD24017.1 411 SKVLAVFLKALGSII 425
                 566677789999886 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 2.2
                 HHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   5 llkllsDpspeVReaAakaLgalaev 30 
                 ll+ l+ ++   R +A+ a+ +++++
  CCD24017.1 524 LLQPLKNEAEPFRIMAIHAINRVVKQ 549
                 556677788888********999886 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.032
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 ++ ++l+ll+++s   R+ Aa  ++ l++
  CCD24017.1 603 IISTILNLLKHKSQLARQIAADLCAILIP 631
                 7899*****************99887776 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.69
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 +lP+l   l+ ++ +V  +++k +g +a
  CCD24017.1 687 ILPTLTPILRNTHRKVQVSTIKLIGCIA 714
                 89**********************9998 PP

  == domain 7  score: 8.2 bits;  conditional E-value: 0.0021
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 ll+ll++++  +R++A  ++g++a+
  CCD24017.1 733 LLELLKSTNKAIRRSANSTFGEIAK 757
                 89*********************98 PP

  == domain 8  score: 6.4 bits;  conditional E-value: 0.0075
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaevl 31 
                 +lPll  +l D +   R++A   + +la ++
  CCD24017.1 840 ILPLLEDALIDRDLVHRQTASDVIKHLALNC 870
                 89**********************9999765 PP

  == domain 9  score: 0.2 bits;  conditional E-value: 0.76
                 HHHHHHHHT-SSHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAa 21 
                 ++ l+  l +p+ +VR+a  
  CCD24017.1 918 MNYLWGGLFHPAKSVRKAFW 937
                 67899999*********965 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.26   4.3e+02      15      56 ..     232     273 ..     203     286 .. 0.84
   2 ?    5.8   0.0     0.013        21       2      76 ..     331     405 ..     330     415 .. 0.92
   3 ?   -1.9   0.0       3.1   5.1e+03      26      63 ..     518     555 ..     508     568 .. 0.83
   4 !   14.0   0.1   3.6e-05     0.058       9      84 ..     584     664 ..     581     675 .. 0.84
   5 ?   -2.5   0.0       4.8   7.9e+03      19      58 ..     678     717 ..     665     751 .. 0.56
   6 ?   -0.9   0.0       1.6   2.7e+03       3      50 ..     815     862 ..     813     887 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.26
  Vac14_Fab1_bd  15 ialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniak 56 
                      l++++k+y+++i+ +v   + D+d   R +  + + n+a 
     CCD24017.1 232 FKLGAETKPYVHQILVVVSPLLIDEDPMARTTGRDIISNLAS 273
                    578899999*********999***999988777776666665 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.013
  Vac14_Fab1_bd   2 arkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvkl 76 
                    ar+ g+ ++  + i l+  i +yl eiv+ + + + D+ + v+  ++ +l  +a ++  + ++ +n +++ l+k 
     CCD24017.1 331 ARHTGIKTFLQLNILLGVGILPYLAEIVECIGDGLLDEHTPVKIMTANTLASLAETSAPHGIEAFNYVLEPLWKG 405
                    6888999999999*****************************************************999999885 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.1
  Vac14_Fab1_bd  26 eeivkpvlkcfsDkdsrvRyyacEslyniakvakgevl 63 
                    + +v+ +l+ ++ + +  R  a+ ++  ++k++ ++ l
     CCD24017.1 518 SFVVENLLQPLKNEAEPFRIMAIHAINRVVKQLGTAEL 555
                    56788999999999999999999999999998876655 PP

  == domain 4  score: 14.0 bits;  conditional E-value: 3.6e-05
  Vac14_Fab1_bd   9 gLaavaialekkikeyleeivkpvlkcfsDkdsrvRyya...cEslyniakvakg.evlkllnei.fdalvklvaDsdesv 84 
                    g+ +va++l++++k++l+ i++++l+ ++ k++  R  a   c  l  ++k +++ e+l++ln i ++ l +++ D+  s+
     CCD24017.1 584 GFGTVALSLNTRMKPFLSAIISTILNLLKHKSQLARQIAadlCAILIPVIKNCNElEMLNKLNIIlYESLGEIYPDVLGSI 664
                    67889*******************************999555678999999987647899999764788888888876655 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 4.8
  Vac14_Fab1_bd  19 kkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakva 58 
                    +ki++ +++i++++  +++ + ++v   ++  +  ia+ a
     CCD24017.1 678 EKIQPPINQILPTLTPILRNTHRKVQVSTIKLIGCIARRA 717
                    3455556666666666666666666555555555555555 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 1.6
  Vac14_Fab1_bd   3 rkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEs 50 
                    ++g l +La++   +++ + +y+  i++ + +++ D+d   R +a++ 
     CCD24017.1 815 QNGVLKALAFMFEYIGELAGDYVYVILPLLEDALIDRDLVHRQTASDV 862
                    688899999999999999999999999999999999998888777765 PP

>> NUC173  NUC173 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.1   1.9e+03      55     103 ..     179     225 ..     159     230 .. 0.69
   2 ?    2.3   0.0     0.067   1.1e+02      21      89 ..     223     291 ..     203     301 .. 0.90
   3 ?   -0.6   0.0      0.52   8.5e+02      32      62 ..     592     623 ..     574     650 .. 0.65
   4 !    9.0   0.0    0.0006      0.97       5      88 ..     690     774 ..     686     784 .. 0.78
   5 ?   -1.3   0.0      0.88   1.4e+03      57      87 ..     778     808 ..     766     830 .. 0.73
   6 ?   -1.8   0.0       1.2     2e+03      16      66 ..     813     863 ..     798     885 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.1
      NUC173  55 efelkkeadevigaairamGpevvL.evlPLnleeeeeeklsegraWLLP 103
                 +++ +k+a +++       Gp+ +  ++lP+ l+++     +++r  ++ 
  CCD24017.1 179 NAASRKAAMRTLTDKCLEFGPKLIFnHILPILLDKT---LEDQERHLMIK 225
                 345677777777777778899998845899999965...33566666655 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.067
      NUC173  21 vlevlsalfeklgkrsspllkkilktlgelreseefelkkeadevigaairamGpevvLevlPLnleee 89 
                 +++v+ +++ klg + +p++ +il  +  l  +e+   ++   ++i+   +a+G  +++++l  ++++e
  CCD24017.1 223 MIKVIDRILFKLGAETKPYVHQILVVVSPLLIDEDPMARTTGRDIISNLASACGLGTMITTLRADIDNE 291
                 6899999999***********************9889999**********************9999975 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.52
      NUC173  32 lgkrsspllkkilktlgelreseef.elkkea 62 
                 l+ r++p+l+ i+ t+ +l +++++ + + +a
  CCD24017.1 592 LNTRMKPFLSAIISTILNLLKHKSQlARQIAA 623
                 55666666666666666666666431222222 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0006
      NUC173   5 aleslLslkyqaawkevlevlsalfeklgkrsspl.lkkilktlgelreseefelkkeadevigaairamGpevvLevlPLnlee 88 
                 +l+ +L+ +++++   +++++  + ++  + +sp   ++i  +l el +s +++ ++ a++++g + +a+Gp+ vL +l  nl+ 
  CCD24017.1 690 TLTPILRNTHRKVQVSTIKLIGCIARRAPSYVSPKeWMRICFELLELLKSTNKAIRRSANSTFGEIAKAIGPQDVLIALLNNLKV 774
                 556666667777777778888888888777775545778888888999999999**********************999877774 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.88
      NUC173  57 elkkeadevigaairamGpevvLevlPLnle 87 
                 +l+     +ig   +++Gp +vL +l  + +
  CCD24017.1 778 QLRVCTAVAIGIVAETCGPYTVLPALMNEYK 808
                 4566667789999999*****9998865555 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 1.2
      NUC173  16 aawkevlevlsalfeklgkrsspllkkilktlgelreseefelkkeadevi 66 
                 ++ + vl+ l+ +fe +g+ +  ++  il  l +   +++  +++ a +vi
  CCD24017.1 813 NVQNGVLKALAFMFEYIGELAGDYVYVILPLLEDALIDRDLVHRQTASDVI 863
                 667889999999999999998666666666666655555555555555555 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.21   3.4e+02     115     203 ..     187     271 ..     161     290 .. 0.59
   2 ?    4.4   0.4     0.015        24      81     127 ..     589     635 ..     585     650 .. 0.83
   3 ?    8.1   0.0    0.0011       1.8      94     154 ..     728     787 ..     678     807 .. 0.83
   4 ?   -3.0   0.0       2.8   4.5e+03      91     126 ..     836     871 ..     812     885 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.21
     CLASP_N 115 nqalaallsnasfspri.lqvlsvalqdKn..vqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfwef 203
                   +l++ + + +  p++ ++++  +l dK+   q R  +++ +  +l + +     +e +  + +i  ++  +l D +p  R t R+ + ++
  CCD24017.1 187 MRTLTDKCLEFG--PKLiFNHILPILLDKTleDQERHLMIKVIDRILFKLG-----AETKPYVHQILVVVSPLLIDEDPMARTTGRDIISNL 271
                 444444444444..6666666666666666223556666666666666666.....444444444455666666677777776666655444 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.015
     CLASP_N  81 aiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasf 127
                 a  l+++++p++ ++++t+l+ll  + ++++q a+   a l+  ++ 
  CCD24017.1 589 ALSLNTRMKPFLSAIISTILNLLKHKSQLARQIAADLCAILIPVIKN 635
                 6779999**************************99988888877763 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0011
     CLASP_N  94 illptLlkllgdtKkiisqnanqalaallsnasfsprilqvlsvalqdKnvqpReysaiwL 154
                 +++  Ll+ll +t k i+ +an ++  + ++++  +++l  l + l+    q+R + a  +
  CCD24017.1 728 RICFELLELLKSTNKAIRRSANSTFGEIAKAIG-PQDVLIALLNNLKVQERQLRVCTAVAI 787
                 677789***************************.888877776666666778888777655 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 2.8
     CLASP_N  91 mveillptLlkllgdtKkiisqnanqalaallsnas 126
                 +v  +lp+L + l d   + +q+a+ +++ l  n++
  CCD24017.1 836 YVYVILPLLEDALIDRDLVHRQTASDVIKHLALNCQ 871
                 566788889999999999999999999999988887 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.91   1.5e+03      87     130 ..     213     250 ..     185     259 .. 0.68
   2 ?   -1.7   0.0       1.7   2.7e+03      78     133 ..     277     330 ..     243     339 .. 0.74
   3 ?    9.4   0.0   0.00065       1.1      34     108 ..     351     425 ..     341     438 .. 0.84
   4 ?   -0.9   0.0      0.97   1.6e+03      84     110 ..     443     469 ..     437     477 .. 0.84
   5 ?    1.5   0.0      0.17   2.8e+02      37      69 ..     518     555 ..     504     577 .. 0.75
   6 ?    0.9   1.0      0.26   4.2e+02      54     130 ..     618     692 ..     592     714 .. 0.72
   7 ?   -0.9   0.0      0.95   1.5e+03      86     173 ..     804     881 ..     794     890 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.91
       ParcG  87 eaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvln 130
                 + L+ ++++ +++++    ++       g++  py +q+L+v++
  CCD24017.1 213 KTLEDQERHLMIKVI---DRI---LFKLGAETKPYVHQILVVVS 250
                 444444444444444...333...35679999999999999876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.7
       ParcG  78 lpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvlnlfk 133
                 l  +i+ l+++++++de +   + +++  +v+ s  + +++ p+++++   ++ ++
  CCD24017.1 277 LGTMITTLRADIDNEDEYIRNITSRTMA-VVTKSFGV-PNMLPFLKAVCHSTRSWR 330
                 6678999999999999999888888884.44555554.667799998877666555 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00065
       ParcG  34 LdydalLp.lffdGlretkhpyrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklv 108
                 L+y a ++  + dGl +++ p ++++ +++  l e+ +  + +++ + +  pl + ++t+ ++v+++ Lk+l  ++
  CCD24017.1 351 LPYLAEIVeCIGDGLLDEHTPVKIMTANTLASLAET-SAPHGIEAFNYVLEPLWKGIRTHRSKVLAVFLKALGSII 425
                 6665444404569*******************9999.66688899***************************9885 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.97
       ParcG  84 plkeaLntrdeeviesaLkvlqklvka 110
                  +++ +n+ d+e+ +++L vlqk  ++
  CCD24017.1 443 IVRREFNSPDDEMKKVVLLVLQKCCQT 469
                 57999*****************98655 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.17
       ParcG  37 dalLplffdGlretkhpyrflategikdllea.....a 69 
                 + ++  +++ l+++++p+r++a ++i+ ++++      
  CCD24017.1 518 SFVVENLLQPLKNEAEPFRIMAIHAINRVVKQlgtaeL 555
                 5556667778999**************99999444432 PP

  == domain 6  score: 0.9 bits;  conditional E-value: 0.26
       ParcG  54 yrflategikdlleaageekilpvlpklilplkeaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvln 130
                  r +a   +  l+   ++ + l++l+kl + l e L    ++v+ s ++++ ++v+++++  e++ p + q+Lp+l 
  CCD24017.1 618 ARQIAADLCAILIPVIKNCNELEMLNKLNIILYESLGEIYPDVLGSIITAILNIVSVMDI--EKIQPPINQILPTLT 692
                 445555555555555555666899999999999999999999999999999999877765..677777788877765 PP

  == domain 7  score: -0.9 bits;  conditional E-value: 0.95
       ParcG  86 keaLntrdeeviesaLkvlqklvkaseligeaLvpyyrqlLpvlnlfknkrvnlgdkidyrkkknikdliqetlellerngGedalin 173
                  +  +t +++v   +Lk+l  +    e+ige    y   +Lp l+     r       d  +++  +d+i++   + + +g eda+i 
  CCD24017.1 804 MNEYKTPETNVQNGVLKALAFM---FEYIGELAGDYVYVILPLLEDALIDR-------DLVHRQTASDVIKHLALNCQGTGHEDAFIH 881
                 5556667777777777777666...88999998999999999888333333.......556677778888887777888888888875 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.7   2.8e+03     116     146 ..     203     231 ..     200     250 .. 0.80
   2 ?   -3.2   0.0       4.7   7.7e+03      22      42 ..     280     300 ..     277     308 .. 0.74
   3 ?   -1.5   0.0       1.4   2.3e+03      22      83 ..     357     422 ..     353     483 .. 0.65
   4 ?    8.0   0.5    0.0016       2.7      71     162 .]     560     650 ..     546     650 .. 0.92
   5 ?    7.0   0.1    0.0034       5.5      56      98 ..     726     769 ..     670     816 .. 0.75
   6 ?    1.4   0.0      0.18   2.9e+02      24      66 ..     842     886 ..     835     907 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.7
        Cnd1 116 qitilefLlsyipkdkqeaeslveklcprlq 146
                 +++il +Ll+ + +d++   +l+ k+++r+ 
  CCD24017.1 203 FNHILPILLDKTLEDQE--RHLMIKVIDRIL 231
                 57899999999999998..999999999986 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.7
        Cnd1  22 lvepLrkrLkDedpyVRktaa 42 
                 +++ Lr+ +  ed+y+R+ + 
  CCD24017.1 280 MITTLRADIDNEDEYIRNITS 300
                 677888888999999997664 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.4
        Cnd1  22 lvepLrkrLkDedpyVRktaaivvakL...ilndmvkekg.flselaklleDenprVvanalaalt 83 
                 +ve +  +L De+  V+  +a ++a L     +  ++  + +l+ l k ++ + ++V a  l al 
  CCD24017.1 357 IVECIGDGLLDEHTPVKIMTANTLASLaetSAPHGIEAFNyVLEPLWKGIRTHRSKVLAVFLKALG 422
                 566677778888888888888888888554333344444445555555555555555555555555 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0016
        Cnd1  71 nprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikviLs 162
                 ++r ++  l+a++e ++ +  ++y+ + +++ +l+++++ +  +   til++L +  +  +q a +l+  l+p ++++n+ ++l+++ +iL+
  CCD24017.1 560 ETRLIDALLIAFQEQKNYD-PIVYQGFGTVALSLNTRMKPFLSAIISTILNLLKHKSQLARQIAADLCAILIPVIKNCNELEMLNKLNIILY 650
                 56667788999****9999.7********************************9999999****************************9996 PP

  == domain 5  score: 7.0 bits;  conditional E-value: 0.0034
        Cnd1  56 ekgflselaklleDenprVvanalaalteisek.senaiynllp 98 
                 +  + +el++ll+ +n+ ++ +a + + ei++  +++ ++  l 
  CCD24017.1 726 WMRICFELLELLKSTNKAIRRSANSTFGEIAKAiGPQDVLIALL 769
                 455889*************************9976555443333 PP

  == domain 6  score: 1.4 bits;  conditional E-value: 0.18
        Cnd1  24 epLrkrLkDedpyVRktaaivvakL.ilndmvkekg.flselakl 66 
                 + L+ +L D+d   R+ta  v+ +L ++ +    ++ f+++l+ l
  CCD24017.1 842 PLLEDALIDRDLVHRQTASDVIKHLaLNCQGTGHEDaFIHMLNLL 886
                 557788888888888888888888865555444444255555554 PP

>> Autophagy_C  Autophagocytosis associated protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00019      0.32       5      23 ..     414     432 ..     413     433 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
  Autophagy_C   5 LviFLKFisSViPTIEyDy 23 
                  L +FLK + S+iP ++ Dy
   CCD24017.1 414 LAVFLKALGSIIPLMDPDY 432
                  78***********999888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       992  (0.0553294); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.81u 0.32s 00:00:01.13 Elapsed: 00:00:00.45
# Mc/sec: 6419.69
//
Query:       CCD24018.1  [L=374]
Description: hypothetical protein NDAI_0C03580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-21   76.5   0.5    7.3e-21   75.1   0.5    1.6  1  Aminotran_4  Amino-transferase class IV
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.23   11.6   0.0    1.3  1  Symplekin_C  Symplekin tight junction protein C terminal


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.5   8.1e-25   7.3e-21      12     219 ..     124     363 ..     118     366 .. 0.82

  Alignments for each domain:
  == domain 1  score: 75.1 bits;  conditional E-value: 8.1e-25
  Aminotran_4  12 eiffldeHleRLrksaellglelpfdeeelrkileelleannsen...............grlrllvsrgggglg..........aatsepsvavyvs 84 
                  + f+ld H+ R++++ +++g ++++++e+l ++l ++l++  ++                 ++r+l s gg  +           + + +++   + +
   CCD24018.1 124 RFFLLDFHYIRINAAIAAFGWNYHITIEDLLAALIHALQEGMEYDtiqeeldyllsrkdiYKMRVLASLGGKFKVeahllsqsndDTNNDSTQEYFQH 221
                  5678***************9999999999999999999999888899999999999988655888888888555588888877775555555555555 PP

  Aminotran_4  85 alppgpesekelplvtssdvrrdapsplpgaKtlnyldnvlarreakerg...........adevllvdedgnvtEgstsNv.fivk.ggelitPpls 169
                  +l  g++s ++ ++ +  +    + s ++++Kt+++ +++ ar  + e +             e l+++++++++Egs++Nv ++ +  g+ +tP++s
   CCD24018.1 222 TLLRGLKSNVN-NWDVFINNEFINVSLFTYLKTTKREHYTKARNLMSELSksynkdlpttkKSEILVYNKSNELMEGSITNVaVWSEkEGTYVTPKAS 318
                  66666666666.33333334555666777*******************998877666655444*******************866435********** PP

  Aminotran_4 170 sgiLpGitrrallelakalgleveereitlkdleeadeafltntlrgvlp 219
                  sg+L+G++r++ll++    g  ++e+ i ++ l + +e++l n+ +g++ 
   CCD24018.1 319 SGCLRGTMRKYLLQA----G-HIKEGHIHIDSLYDGEEILLFNGIMGCVK 363
                  ***************....6.59************************986 PP

>> Symplekin_C  Symplekin tight junction protein C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.5e-05      0.23      54     101 ..     146     191 ..     138     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.5e-05
  Symplekin_C  54 spltpaellvalhnlekkkkevelkslvealdlclsekevftqevlaa 101
                  + +t ++ll al +    ++++e++ + e ld+ ls+k++++++vla+
   CCD24018.1 146 YHITIEDLLAALIHAL--QEGMEYDTIQEELDYLLSRKDIYKMRVLAS 191
                  5678899999988777..69**************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2632.55
//
Query:       CCD24019.1  [L=748]
Description: hypothetical protein NDAI_0C03590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.9e-157  524.1   0.2   2.7e-157  523.5   0.2    1.2  1  tRNA-synt_1g  tRNA synthetases class I (M)
    3.5e-30  105.0   3.3    3.5e-30  105.0   3.3    2.0  2  MetRS-N       MetRS-N binding domain
    4.4e-11   41.7   1.5    0.00015   20.2   0.0    2.8  2  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
     0.0091   15.4   0.0      0.034   13.5   0.0    1.9  2  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
  ------ inclusion threshold ------
      0.013   15.5   0.0      0.039   13.9   0.0    1.8  1  Anticodon_1   Anticodon-binding domain of tRNA
      0.035   14.0   0.0        0.1   12.4   0.0    1.7  1  Sigma54_CBD   Sigma-54 factor, core binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  523.5   0.2  8.9e-161  2.7e-157       1     390 [.     195     586 ..     195     587 .. 0.99

  Alignments for each domain:
  == domain 1  score: 523.5 bits;  conditional E-value: 8.9e-161
                   EEEEE--B--SS---HHHHH.HHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHH CS
  tRNA-synt_1g   1 vlvttalpYangklHlGhll.evisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvheeikelfkklnisfdkygrttseeh 96 
                   +l+t+alpY+n+++HlG+++ +v+saDifaRy++ r++++lfvcgtDe+Gt++e+kA +eg tp+el++k+h+++++++k+++i fd++grtt+e++
    CCD24019.1 195 ILITSALPYVNNVPHLGNIVgSVLSADIFARYCKTRNYNTLFVCGTDEYGTATETKALEEGCTPRELCDKYHKIHSDVYKWFQIGFDYFGRTTTEQQ 291
                   69*********************************************************************************************** PP

                   HHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-EE........-TTS-EE-TTSSB-E................EEE.EEEEEE-GGGGHH CS
  tRNA-synt_1g  97 kelvqeifkklkekgliyekeieqlycpkderflpdryvegtCPkckseeargdqceecgkkleptelinpksaisgskpevketehlffklskfek 193
                   +e++q+ifkkl+++g+++e++++qlycp ++++l+dryveg+CPkc++e+argdqc++cg  l+p elinp++++ +++p+ k ++h+f++l+k+e 
    CCD24019.1 292 TEIAQDIFKKLDKNGYLEEQSMKQLYCPVHNSYLADRYVEGECPKCHYEDARGDQCDKCGGLLDPFELINPRCKLDNATPIPKFSDHIFLSLDKLEP 388
                   ************************************************************************************************* PP

                   HHHHHH.HH-TT..SHHHHHHHH.HHHHT----EE-ESS-SSS-EET..TECCEEE-HHHHHHHHHHHTTTTT-...TTSGGGG.G--S......EE CS
  tRNA-synt_1g 194 klkewieeeeke..leenvkkivkewlkegLkdlaisrdldwGipvP..gaekkvlYVWldAligYisatkelakkkgeeekwkeyWakdkevelvh 286
                    + +w+e++++e  +++n k+i+++wlk+gLk+++i+rdl wG pvP  + ++kvlYVW+dA+igY+s+t +++      +kw+++W++ ++v+l++
    CCD24019.1 389 SIAKWVEKSSEEgqWSKNSKTITNSWLKDGLKPRCITRDLVWGTPVPleKYKDKVLYVWFDATIGYVSITANYT------KKWEQWWKDPENVKLYQ 479
                   ******99998899**********************************999**********************9......89*****99899***** PP

                   EEEGGGHHHHHTHHHHHHHH..TT----S-EEEE--EEE--------------HHHHHHH.H-HHHHHHHHHHHS-TTS-EEE-HHHHHHHHHHHCC CS
  tRNA-synt_1g 287 figkdiikFHtifwPaillg..aelklpkkvvaheyltvegkKlSkSrgvvvkakealer.ldadllRYylaaeapekkDldfswedfvervNseLa 380
                   f+gkd+++FHt+++P  +lg   e+++++++ ++eyl++eg+K+SkSrgv+v+ ++a+++ +++ ++RYyla+ +pe++D++fsw+dfv+r+NseL 
    CCD24019.1 480 FMGKDNVPFHTVVFPGSQLGtgDEWTMLHHLNTTEYLQYEGGKFSKSRGVGVFGNNAQDSgVSPSVWRYYLASVRPESSDSHFSWDDFVARNNSELL 576
                   ******************998899************************************************************************* PP

                   CHHHHHHHHH CS
  tRNA-synt_1g 381 dklgnlvnRv 390
                   ++lgn+vnR 
    CCD24019.1 577 ANLGNFVNRL 586
                   *********7 PP

>> MetRS-N  MetRS-N binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   3.3   1.2e-33   3.5e-30       1     119 [.      11     127 ..      11     129 .. 0.96
   2 ?   -1.6   0.1       1.3   3.9e+03      58     100 ..     262     304 ..     258     315 .. 0.76

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 1.2e-33
                 SS--HHHHHHHHHHHHHHHHH--STT--EE-SS--S--EE-S--S----HHHHHHHHTT--TTTTSHHHHHHHHHTTTGGGSSS--HHHHHHHHHHHHH CS
     MetRS-N   1 kdhsaklqLannlklalalelaskglklevnedeaapqLttaeefrLfDanaiLryvldDfegeesdeyqyalasleallyhkelvkehvtelvnksle 99 
                 kdhs ++ +annlk+ala+e+a+k+lkl +n+d+ + qL+ ++ ++Lf+ naiLry+l+Df ++es+  q+a++ +e+ l  +e++    +e+v k+le
  CCD24019.1  11 KDHSHAISFANNLKIALAIEYATKDLKLTINDDSNIAQLVVSDSYQLFNPNAILRYALNDFTDQESEANQFAVTIVEKALISSETSS---KEVVTKTLE 106
                 89******************************************************************************9998876...56789**** PP

                 HT-.S---SS--HHHHHHHHH CS
     MetRS-N 100 nyL.vsleepLsatrlilfan 119
                 +yL   +eep+sat+lil a+
  CCD24019.1 107 QYLpYPIEEPVSATKLILLAD 127
                 ***99*************997 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.3
                 TT--TTTTSHHHHHHHHHTTTGGGSSS--HHHHHHHHHHHHHH CS
     MetRS-N  58 ldDfegeesdeyqyalasleallyhkelvkehvtelvnkslen 100
                  d + +++sd y++ +   + +       +  +++ + k l++
  CCD24019.1 262 CDKYHKIHSDVYKWFQIGFDYFGRTTTEQQTEIAQDIFKKLDK 304
                 5789999******999999988888777777777777777765 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.1e-08   0.00015      19      79 ..     189     250 ..     174     334 .. 0.86
   2 !   18.9   0.8   1.3e-07   0.00038     357     468 ..     356     472 ..     345     487 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.1e-08
  tRNA-synt_1  19 ekekkefilvdgPPyvtGslHiGhalaktlk.divirykrmkGkevlyvpGwDhaGlaieak 79 
                  ek +++  ++   Pyv+  +H+G+++ ++l  di  ry + + +++l+v G+D  G a+e+k
   CCD24019.1 189 EKGERNILITSALPYVNNVPHLGNIVGSVLSaDIFARYCKTRNYNTLFVCGTDEYGTATETK 250
                  4556677888899****************9559**************************986 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.3e-07
  tRNA-synt_1 357 kiehsvpfcerskkpiiyrateqWfvrvkeladaalkave....kvqfvpkskekryaswlen.iqdWciSRqrwWGhriplfvske.teevvvreel 448
                  ++e+  p c+  ++  i++ ++  f ++++l+ ++ k ve    + q++ + +++  +swl++  +  ci R+++WG+++pl   k+    v ++  +
   CCD24019.1 356 PFELINPRCKLDNATPIPKFSDHIFLSLDKLEPSIAKWVEksseEGQWSKN-SKTITNSWLKDgLKPRCITRDLVWGTPVPLEKYKDkVLYVWFDATI 452
                  67777899999999999*************999999999944334445433.4556789***956889*************95444403335555566 PP

  tRNA-synt_1 449 kelvagreeeeaekkaleke 468
                   ++  + + +++ ++++++ 
   CCD24019.1 453 GYVSITANYTKKWEQWWKDP 472
                  66666666666666666655 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.1e-05     0.034       8     127 ..     193     314 ..     186     331 .. 0.83
   2 ?   -2.1   0.0      0.65   1.9e+03     240     283 ..     509     553 ..     487     557 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.1e-05
                   TEEEEEEEEEBTTS--BHHHH.HHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SB--BGGG CS
  tRNA-synt_1e   8 kkvtlYvCGptvydashlGha.RslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvkelaekfieefkkdleaLnvlkptleprvse 103
                   +++ + +  p v +  hlG+   s+++ Di++r+ ++++Y+  fv    +      ++a ee+ + +el++k+ + + + ++  ++    +    +e
    CCD24019.1 193 RNILITSALPYVNNVPHLGNIvGSVLSADIFARYCKTRNYNTLFVCGTDEYGTATETKALEEGCTPRELCDKYHKIHSDVYKWFQIGFDYFGRTTTE 289
                   5556666668899******962577799******************9999999999*******************9999999999999999989999 PP

                   GHHHHH.HHHHHHHHTTSEEE-TTS CS
  tRNA-synt_1e 104 kvdeii.elvekliekgyaYavsdg 127
                   + +ei  ++ +kl ++gy  ++s  
    CCD24019.1 290 QQTEIAqDIFKKLDKNGYLEEQSMK 314
                   9999962577888888987666555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.65
                   EEEEE--EEETTBE--TTTT---BHHHHHT.TS-HHHHHHHHHSS CS
  tRNA-synt_1e 240 yflhnghlkiegekmsksLknfitikdvlk.kfdprqlRllllsa 283
                   +   +++l+ eg k sks +  ++ +++    ++p++ R++l+s+
    CCD24019.1 509 HLNTTEYLQYEGGKFSKSRGVGVFGNNAQDsGVSPSVWRYYLASV 553
                   44457899**********987776666554147777778877765 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.3e-05     0.039      61     105 ..     669     714 ..     650     742 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.3e-05
  Anticodon_1  61 aaqevllevletllrllaPfmPfitEelwqr.eeeelgkkesimla 105
                  a+  v l ++ t++ l++PfmP ++E++++  ++  l+ +e+ +la
   CCD24019.1 669 AVVGVGLNIIYTVTSLIYPFMPETAEKIYKMlNAPALKIDEEFHLA 714
                  45677788999******************44522222333444444 PP

>> Sigma54_CBD  Sigma-54 factor, core binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.5e-05       0.1      25      52 ..     287     315 ..     280     332 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.5e-05
  Sigma54_CBD  25 lseeereiaeylienLdedGYlees.lee 52 
                   +e+++eia+ + ++Ld++GYlee+ +++
   CCD24019.1 287 TTEQQTEIAQDIFKKLDKNGYLEEQsMKQ 315
                  6799*******************763655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 4761.90
//
Query:       CCD24020.1  [L=519]
Description: hypothetical protein NDAI_0C03600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-48  162.7   0.5    2.1e-47  161.1   0.0    2.1  3  DEAD        DEAD/DEAH box helicase
    1.2e-23   83.5   0.0    2.9e-22   79.1   0.0    2.7  3  Helicase_C  Helicase conserved C-terminal domain
    9.4e-19   67.4   0.6    1.8e-18   66.5   0.6    1.5  1  DUF4217     Domain of unknown function (DUF4217)
    4.2e-06   26.9   0.0      9e-06   25.8   0.0    1.6  1  ResIII      Type III restriction enzyme, res subunit
     0.0032   16.8   0.0     0.0081   15.5   0.0    1.6  1  SecA_DEAD   SecA DEAD-like domain
  ------ inclusion threshold ------
      0.083   13.2   1.7       0.19   12.0   0.1    2.4  3  AAA_22      AAA domain
      0.092   12.5   0.0        0.6    9.8   0.0    2.2  1  AAA_30      AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.1   0.0   8.4e-51   2.1e-47       1     176 []      75     247 ..      75     247 .. 0.95
   2 ?   -3.1   0.0       2.2   5.6e+03      68      92 ..     315     339 ..     309     355 .. 0.64
   3 ?   -3.0   0.1       2.1   5.4e+03      23      34 ..     394     405 ..     390     407 .. 0.84

  Alignments for each domain:
  == domain 1  score: 161.1 bits;  conditional E-value: 8.4e-51
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng 97 
                 t++Qa++ip ++ g+dvl+aa+TGsGKTlaflip+++ +y+   k ++g+ +++++PtreLa q++  +++++++ + +   +igg ++r++ +kl +g
  CCD24020.1  75 TPVQARTIPPLMAGRDVLGAAKTGSGKTLAFLIPAIELLYSLkfKPRNGTGIIVITPTRELALQIFGVVRELMEFHSQTFGIVIGGANRRQEAEKLMKG 173
                 89**************************************9999999999************************977677799**************** PP

                 CSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 v+i+++tpgrl+d+l +t+ + +++++ l++DEadr+l+ gf+d++++i++ lp      +++rq +++SAT +++v++l
  CCD24020.1 174 VNILIATPGRLLDHLqNTKGFIFKNLKALIIDEADRILEIGFEDEMKQIIRILP------NEDRQSMLFSATQTTKVEDL 247
                 *************9977888*********************************4......47789*********999875 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.2
                 HHHTTTSTSEEEEEETTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  68 kkfkkyidlrvlliiggvaardqls 92 
                  ++++yidl vl + g++++++  +
  CCD24020.1 315 AELLNYIDLPVLELHGKQKQQKRTN 339
                 5677789988887766555554443 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.1
                 TTSSHHHHHHHH CS
                 xxxxxxxxxxxx RF
        DEAD  23 TGsGKTlaflip 34 
                  G GK+l+fl p
  CCD24020.1 394 KGKGKSLMFLTP 405
                 599******987 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.22   5.6e+02       6      73 ..     113     180 ..     108     211 .. 0.60
   2 ?   -2.0   0.0       1.8   4.6e+03       4      31 ..     220     246 ..     217     264 .. 0.67
   3 !   79.1   0.0   1.2e-25   2.9e-22       5     110 ..     288     392 ..     284     393 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.22
                 HHHHHHHT.TTTSEEEEEESSHH.HHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C   6 llellkle.eeggkilifvntid.rlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 l+ l k++ ++g  i+++++t++  l+ + +++e  ++++ ++   +   +r++  e+  k  +++Liat
  CCD24020.1 113 LYSL-KFKpRNGTGIIVITPTRElALQIFGVVRELMEFHSQTFGIVIGGANRRQEAEKLMK-GVNILIAT 180
                 4444.34404455566666666654433333333333444444444444555555555534.46888887 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.8
                 HHHHHHHHHTTTTSEEEEEESSHH.HHHH CS
  Helicase_C   4 eallellkleeeggkilifvntid.rlek 31 
                 ++++++l   +e++++++f+ t++ ++e+
  CCD24020.1 220 KQIIRIL--PNEDRQSMLFSATQTtKVED 246
                 5566665..67888888888888766654 PP

  == domain 3  score: 79.1 bits;  conditional E-value: 1.2e-25
                 HHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHH CS
  Helicase_C   5 allellkleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiq 102
                  l  +l ++++++k+l f  ++++++  ++ll +  ++ v+ lhg+ +q++r  ++ +f + +  +L++tdva+rG+dip v+ +++fd+p+++++yi+
  CCD24020.1 288 LLFSFL-KRNQKRKSLSFYSSCNSVKYyAELL-NYIDLPVLELHGKQKQQKRTNTFFEFCNADKGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIH 384
                 456667.7999************997644444.5559**********************999989********************************** PP

                 HHTTSSST CS
  Helicase_C 103 riGRtgRa 110
                 r+GRt+R+
  CCD24020.1 385 RVGRTARG 392
                 *******6 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.6   6.9e-22   1.8e-18       1      61 []     434     494 ..     434     494 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 6.9e-22
     DUF4217   1 iqqkleslcakdrdlkelAqkAfvsyvraYsvhlakeiFrvkkLdlealAksfGLleaPki 61 
                 +q++le+l++++++l++ A+++++sy++aY++h++k +++++kLdl+++Aks+G++ +Pk+
  CCD24020.1 434 VQSQLEKLIKSNYYLHQTAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFSIPPKV 494
                 699********************************************************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.5e-09     9e-06      30     168 ..      94     239 ..      56     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 3.5e-09
                 EESTTSTHHHHH.HHHHHHH-S..........-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH... CS
      ResIII  30 kmaTGtGKTlva.aklierllkkgkee.....kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadseee 121
                 ++ TG+GKTl   + +ie l++  k +      ++++ p+++l  q    ++++++ + +  g ++ g ++++  ek  +  +il++t  +l  ++   
  CCD24020.1  94 AAKTGSGKTLAFlIPAIELLYSL-KFKprngtGIIVITPTRELALQIFGVVRELMEFHSQTFGIVIGGANRRQeAEKLMKGVNILIATPGRLLDHL--- 188
                 678*******9966666666654.434478999***************888888888877788898888888866778899***************... PP

                 .....HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---..SEEEEEESS CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgak...kswreilekfke..avllglTAT 168
                  ++++ +  ++ + +iiDEa r+ +    +++++i++ +++     + ++AT
  CCD24020.1 189 -QNTKGFIFKNLKALIIDEADRILEIgfeDEMKQIIRILPNedRQSMLFSAT 239
                 .899999999999*********998655558999877764433555667777 PP

>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.2e-06    0.0081      80     210 ..      78     211 ..      13     267 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.2e-06
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
   SecA_DEAD  80 dvQliGglvlhegkiaemkTGEGKtlvatlpay..lnalt.....gkgvhvvtvndYLakrdaewmgpvyeflGlsvgvieseleseerreaY..eadi 169
                 +   i  l+  +  +   kTG GKtl+  +pa+  l +l+     g g+ v+t    La + +  +++++ef+  + g++    ++++  e+     +i
  CCD24020.1  78 QARTIPPLMAGRDVLGAAKTGSGKTLAFLIPAIelLYSLKfkprnGTGIIVITPTRELALQIFGVVRELMEFHSQTFGIVIGGANRRQEAEKLmkGVNI 176
                 4445555555555677789***********99644667743344499********************************99886665555554015566 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD 170 tYgtnnelgfdyLrDnlalskeelvqrglnfaivDEvDsvL 210
                 + +t        L D+l+  ++  + ++l+  i+DE+D +L
  CCD24020.1 177 LIATPGR-----LLDHLQN-TKGFIFKNLKALIIDEADRIL 211
                 7776655.....4566654.56778899***********98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.4   3.7e+03      13      21 ..      96     104 ..      94     106 .. 0.83
   2 ?   12.0   0.1   7.6e-05      0.19      82     130 ..     184     239 ..     145     245 .. 0.77
   3 ?   -3.2   0.0       3.6   9.3e+03      71     100 ..     448     477 ..     421     480 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.4
      AAA_22  13 esGtGKTtl 21 
                  +G+GKT+ 
  CCD24020.1  96 KTGSGKTLA 104
                 69*****85 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7.6e-05
      AAA_22  82 leqalrarav.....ielliiDEaqh.lr...seealeeLrsllnlsrkgvqliLvGt 130
                 l ++l++++       ++liiDEa++ l    ++e+ + +r+l n  ++  ++++  t
  CCD24020.1 184 LLDHLQNTKGfifknLKALIIDEADRiLEigfEDEMKQIIRILPN--EDRQSMLFSAT 239
                 455555555577778899********6636444777777799999..77777776655 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.6
      AAA_22  71 erlsseell.ealeqalraravielliiDEa 100
                   ++ ++ + ++l+ ++++  +  +  iD  
  CCD24020.1 448 LHQTAKDGYrSYLQAYASHSLK-TVYQIDKL 477
                 4555555554777777766666.77777765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00023       0.6      35     111 ..     143     225 ..      73     240 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00023
      AAA_30  35 lkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk..grarlepgtllivDEagmv....dtkqlaallka 111
                 +++l e + +  g vig A   + A++L ++++i  +t  +ll+ l+  +   +++ + li+DEa  +      +++++++++
  CCD24020.1 143 VRELMEFHSQTFGIVIGGANRRQEAEKLMKGVNILIATPGRLLDHLQntKGFIFKNLKALIIDEADRIleigFEDEMKQIIRI 225
                 45666667777579********************99******999997632444455*******9876555334455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1028  (0.0573373); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 3477.06
//
Query:       CCD24021.1  [L=719]
Description: hypothetical protein NDAI_0C03610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-49  168.0   2.4    1.7e-41  142.4   0.1    2.5  2  Pkinase         Protein kinase domain
    1.7e-22   80.0   0.3    6.2e-20   71.6   0.0    2.4  2  Pkinase_Tyr     Protein tyrosine kinase
    3.4e-05   22.8   0.2    3.4e-05   22.8   0.2    2.4  2  Pkinase_fungal  Fungal protein kinase
     0.0019   17.6   0.0       0.23   10.7   0.0    2.4  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
       0.97    8.7  10.0        1.9    7.7  10.0    1.4  1  NOA36           NOA36 protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.4   2.8e-09     1e-05       4      55 ..      69     119 ..      66     136 .. 0.87
   2 !  142.4   0.1   4.7e-45   1.7e-41      43     264 .]     150     396 ..     125     396 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.8e-09
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkkl 55 
                 +++lG G+f+ V ++++ +t++++A+K i+k+  k k  k ++rE k+lk +
  CCD24021.1  69 NSQLGDGNFSIVKECINIQTKDHFAMKLINKKIVKGKI-KLIQREFKLLKFI 119
                 689***************************99777765.69******99866 PP

  == domain 2  score: 142.4 bits;  conditional E-value: 4.7e-45
                 HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--.HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.T..... CS
     Pkinase  43 kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgsls.eeeakkiakqilegleylHskgiiHrDlKpeNiLid.e..... 133
                  ++    ++  +++ h +i++l+++fe+kd+++l+++++++++l +l+ ++ +l+ ++++  +++ +l++l++lHs+gi+HrD+K eN+L+  +     
  CCD24021.1 150 ANANVNTNMYDTFDgHHHILQLFDFFETKDSIVLITQLCQKDDLYELIIQNEKLDlKRQVVPFTACLLSALQFLHSHGIVHRDIKAENVLFRlNptntn 248
                 455556678888999********************************998888772568999*****************************97677777 PP

                 ............TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..............TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHH CS
     Pkinase 134 ............kgelKitDFGlakelessskltsfvgtseYlAPEvl..............keneyskkvDvWslGvilyelltgkppfsgekgkekv 206
                               +l ++DFGla++l+sss l+++vgt  Y+APE++              + ++ys +vD+W+lGv+ y +  g +pf  e+++e  
  CCD24021.1 249 gdmkidqgydlmAHDLILADFGLATQLDSSS-LKEYVGTISYIAPEIVkckgvekmnadelnSLTKYSYPVDIWALGVLTYFMALGFTPFDCENDEE-- 344
                 777776555554444**************99.****************99888777665554449**************************766666.. PP

                 HHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 207 ekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                    ld    i k    +  +   ++   +e+ ++++ +++kd  +R+ta +l+ hp+l
  CCD24021.1 345 --TLDC---ISKCDYYV-DDDMLHDPTLKEFWSFIQCCFTKDVANRPTAFDLKYHPFL 396
                 ..4454...22222223.334444445689**************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.4    0.0015       5.5       4      59 ..      69     120 ..      66     157 .. 0.86
   2 !   71.6   0.0   1.7e-23   6.2e-20      52     253 ..     156     388 ..     125     393 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0015
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS- CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklk 59 
                  +++lG G+f+ V e+       +++ + a+K ++++  + + + + +e k++k ++
   CCD24021.1  69 NSQLGDGNFSIVKECINI----QTKDHFAMKLINKKIVKGKIKLIQREFKLLKFIS 120
                  689************999....89999*******9999999999999***999773 PP

  == domain 2  score: 71.6 bits;  conditional E-value: 1.7e-23
                  HHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHH.HHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE......... CS
  Pkinase_Tyr  52 akimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlk.dllsfalqvAkGmeyLeskklvHrdlaarNvLlse......... 138
                  +++  ++  h++i++l  +   +++++++t+++++ dL + + ++  ekl+lk +++ f++ + +++++L+s+ +vHrd+ a NvL +          
   CCD24021.1 156 TNMYDTFdGHHHILQLFDFFETKDSIVLITQLCQKDDLYELIIQN--EKLDLKrQVVPFTACLLSALQFLHSHGIVHRDIKAENVLFRLnptntngdm 251
                  455566678***********************************9..566655167899****************************988999***** PP

                  .........TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..............EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHH CS
  Pkinase_Tyr 139 .........nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..............ftsksDvWsfGvllwEiftlgespypglknee 213
                            +   ++DfGLa ++    + ++ +e    + ++apE++k k               ++   D+W+ Gvl++  + lg +p+   ++ee
   CCD24021.1 252 kidqgydlmAHDLILADFGLATQL----DSSSLKEYVGTISYIAPEIVKCKGvekmnadelnsltkYSYPVDIWALGVLTYF-MALGFTPFDCENDEE 344
                  ******99989999**********....4445566788999*****99987778899999***99999999*********95.567*****9999999 PP

                  HHHHH.HTTEES-BBTT...SBHHHHHHHHHHT-SSGGGS--HH CS
  Pkinase_Tyr 214 vlekl.kegkrlekpek...cpeelyelmkkcweedpeeRptfs 253
                  +l+ + k ++ ++       + +e+ ++++ c+++d ++Rpt  
   CCD24021.1 345 TLDCIsKCDYYVDDDMLhdpTLKEFWSFIQCCFTKDVANRPTAF 388
                  9999855555555443301146777888*************965 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.2   9.5e-09   3.4e-05     317     387 ..     218     296 ..      95     311 .. 0.87
   2 ?   -5.0   5.2       2.6   9.4e+03     208     212 ..     563     567 ..     469     691 .. 0.61

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 9.5e-09
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilit............ds.kkegerkglLiDLDlakelsddssesgarertGTleFmaievlk 387
                      +++ L+   gi+HrDi ++N+l+             d+  +   +  +L+D+ la++l+     s+ +e +GT+ ++a e++k
      CCD24021.1 218 SALQFLH-SHGIVHRDIKAENVLFRlnptntngdmkiDQgYDLMAHDLILADFGLATQLDS----SSLKEYVGTISYIAPEIVK 296
                     5778899.9***************97777777766555534449999*************5....445679********99998 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 2.6
  Pkinase_fungal 208 hedve 212
                     h+ ++
      CCD24021.1 563 HNLIQ 567
                     22222 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0066        24     152     178 ..     215     241 ..     194     251 .. 0.86
   2 !   10.7   0.0   6.5e-05      0.23     223     258 ..     310     345 ..     277     358 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0066
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllld 178
                   l+   + L+++g+vh +++++n+l+ 
   CCD24021.1 215 CLLSALQFLHSHGIVHRDIKAENVLFR 241
                  55566789***************9985 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 6.5e-05
  Kinase-like 223 nktkmthkldaWqlGlviyriwclklPltlateeak 258
                    tk+++++d W+lG+  y+++    P++   +e  
   CCD24021.1 310 SLTKYSYPVDIWALGVLTYFMALGFTPFDCENDEET 345
                  5689******************99999998877655 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  10.0   0.00053       1.9     266     291 ..     678     713 ..     643     717 .. 0.37

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00053
       NOA36 266 g..........ddeddegdedddddddeedddeeed 291
                 +          + +d+ +++d+d+dd++ed+d+++d
  CCD24021.1 678 NsnlkqenkkyNANDNANANDNDNDDEDEDEDDDND 713
                 121111111111122222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1500  (0.0836633); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 4752.47
//
Query:       CCD24022.1  [L=143]
Description: hypothetical protein NDAI_0C03620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-14   52.7  12.9    9.6e-14   51.8  12.5    1.6  2  Got1             Got1/Sft2-like family
  ------ inclusion threshold ------
      0.059   13.6   7.8       0.09   13.0   0.8    2.3  2  DUF3784          Domain of unknown function (DUF3784)
       0.39   11.1   6.1       0.47   10.9   0.5    2.7  2  PEMT             Phospholipid methyltransferase
          2    8.5   6.8       0.25   11.4   1.7    1.8  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe


Domain annotation for each model (and alignments):
>> Got1  Got1/Sft2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.4     0.045     2e+02      18      34 ..      10      26 ..       2      27 .. 0.81
   2 !   51.8  12.5   2.1e-17   9.6e-14       5     112 ..      23     117 ..      15     118 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.045
        Got1 18 kprkFallytlGnilfl 34
                + ++F++ +t+G +lf+
  CCD24022.1 10 RNAQFGVAFTFGGFLFF 26
                6689********99997 PP

  == domain 2  score: 51.8 bits;  conditional E-value: 2.1e-17
        Got1   5 fllsllglpllflkprkFallytlGnilflastafLiGpkkqlkkmfskerliativyllsllltLyaalvlkstlltllfvivqllallwyllsyiPg 103
                 fl+ l+g++++f+     ++l++lGnilfl++++++iGp k+ +++ +++++ ++i++l+++ l+L  +++       ++++i++ l+++ ++ +++ +
  CCD24022.1  23 FLFFLFGIVTFFD-----RALLALGNILFLIGVLLIIGPHKTYNFFNRPTKRRGSICFLIGISLILS-KWT-------FIGFIIESLGIVGLFGDFFGI 108
                 4444788888888.....89**********************************************9.887.......********************* PP

        Got1 104 grsalkkvl 112
                 + ++l++++
  CCD24022.1 109 IVQFLRSLP 117
                 *****9876 PP

>> DUF3784  Domain of unknown function (DUF3784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.8     2e-05      0.09      44      87 ..      12      54 ..       4      61 .. 0.87
   2 ?    4.5   1.0    0.0089        40      47      83 ..      71      99 ..      65     116 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2e-05
     DUF3784 44 rfmgivllligilflllgllsaiesealliialiviiiiviyli 87
                 + g+++++ g lf+l+g++  +++ all+++ i+++i+v+++i
  CCD24022.1 12 AQFGVAFTFGGFLFFLFGIV-TFFDRALLALGNILFLIGVLLII 54
                6899****************.99999999999999999998876 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0089
     DUF3784 47 givllligilflllgllsaiesealliialiviiiiv 83
                g +++ligi +        i s++++i+++i  ++iv
  CCD24022.1 71 GSICFLIGISL--------ILSKWTFIGFIIESLGIV 99
                55566666333........344444444444222222 PP

>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.5    0.0022       9.7      47      81 ..      59      94 ..      16     106 .. 0.66
   2 ?   10.9   0.5   0.00011      0.47       3      40 ..      75     111 ..      73     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0022
        PEMT 47 iYrylnnPe.yvgstlgflGlaLitgsaaglllall 81
                 Y+++n P  + gs++ ++G++Li ++++ + +++ 
  CCD24022.1 59 TYNFFNRPTkRRGSICFLIGISLILSKWTFIGFIIE 94
                6999999962678888889*****999997665554 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00011
        PEMT   3 lilGlllialglllvlssiealgefgtfygdfFlelmd 40 
                 +++G+ li+ + ++   +ie+lg+ g f gdfF++  +
  CCD24022.1  75 FLIGISLILSKWTFIGFIIESLGIVGLF-GDFFGIIVQ 111
                 678*************************.****98655 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.7   5.5e-05      0.25      32      79 ..      11      54 ..       7      58 .. 0.61
   2 ?   -0.6   0.3       0.3   1.4e+03      52      72 ..      73      95 ..      69     115 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.5e-05
  Phage_holin_3_6 32 ragsgagllgaagvlallalllllvalalalaalwlaalivaavllvl 79
                     +a  g+++ +++ ++ l+++++++  ++lal       l + +vll++
       CCD24022.1 11 NAQFGVAFTFGGFLFFLFGIVTFFDRALLAL----GNILFLIGVLLII 54
                     5566777777777777777777777776666....3333344555544 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.3
  Phage_holin_3_6 52 llllvalalala.alwlaali.v 72
                     +++l+++ l+l+ +  ++++i  
       CCD24022.1 73 ICFLIGISLILSkWTFIGFIIeS 95
                     44444554555444444444422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1064.62
//
Query:       CCD24023.1  [L=489]
Description: hypothetical protein NDAI_0C03630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.9e-108  362.0   0.0   5.7e-108  361.8   0.0    1.0  1  Amidase   Amidase


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.8   0.0  3.2e-112  5.7e-108       5     451 .]       9     480 ..       5     480 .. 0.89

  Alignments for each domain:
  == domain 1  score: 361.8 bits;  conditional E-value: 3.2e-112
                 HHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE--SG CS
     Amidase   5 aflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTnmde 103
                 +++k + ++++++n +++ + ++  ++ +++++   ++++++ L+G   ++KDni +++ +tt++s++l++y +++ at+v++L +aG +i+gkTnmde
  CCD24023.1   9 HVIKALPKLQSRYN-IFAHLEPS-TKILQRYNDIQ-KNQPNSTLAGTISAIKDNIVTQDSNTTCASQMLKEYKSPFTATIVKLLSNAGTTIVGKTNMDE 104
                 56666777788888.33333333.34444444333.4799*********************************************************** PP

                 GG-SSSSTT-TT---BBTTCTCC..........B--SSSHHHHHHHHT.....TSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT CS
     Amidase 104 famgsstensvfgptrNPwdksr..........tpGGSSGGsAAavAa.....glvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessl 187
                 famgs + +s++gpt NP               + GGSS+GsAAav+a     ++ ++a+GtDtGGS+R+PAs+c+++G+K +ygr+Sr+gvv++++sl
  CCD24023.1 105 FAMGSLGIHSCYGPTINPSRAFFanddmgkremVTGGSSSGSAAAVSAtidgdNIIDFALGTDTGGSVRLPASYCSVLGFKGSYGRISRYGVVSFAQSL 203
                 ******************754222233344556*************9944444579******************************************* PP

                 -EEEEEESSHHHHHHHHHHHBS--TT-TTS----...HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGG CS
     Amidase 188 dvvGplarsvedlalllrvilgedpkdstssvip...eesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpslee 283
                 d+vG++a+++  l+ +++v+ ++d+kd+ts++     e  e  ++ l   +++lriG+v+e++ +s+d++++ a+ +++ +L e+G +vv++++ps+++
  CCD24023.1 204 DTVGIFAKDLPILRGVFDVLNKYDRKDPTSLNDLlrnEIIELSDKCLHRLQNPLRIGIVQEFNQESVDKDIKSAFHDFIGQLMEKGYTVVPISIPSIKY 302
                 ******************************99778844444455556677789********************************************** PP

                 HHHHHHHHHHHHHHHHTTT-SSSSS.---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCC........ CS
     Amidase 284 alslyylilvaeassnlarylgvry.erlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafee........ 373
                  l++yy+++++ea snl+ry+g+r+  r+ + +v +e +++++++++g+ev++r++lgny+ls+    ++y++aqk r +l++ef+ +f+         
  CCD24023.1 303 SLPIYYTLAPSEAVSNLSRYDGIRFgTRDPNEDVNNEAFFSKTRSNFGTEVRNRLILGNYNLSSSFAHNNYIQAQKLRVNLINEFDFMFKFpnvltrnk 401
                 *****************************************************************88888***************************** PP

                 ........BSEEEEESSSSS--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHHH CS
     Amidase 374 ........lDvllsPtaptpaprlgekdktidsytvlynlldftavvvpvnlaglpalsvpagksedglPvGvqvigkafqeetlL 451
                         +D+++sPt+  +++  + + ++ +  t  y  + ft   +p++laglp +++p+  +e   P+G+q++g++++++ +L
  CCD24023.1 402 anvgddngIDFIISPTSLNKPTFVRRAMSD-KIATDEYFNDIFT---IPASLAGLPTMTIPIRGNE---PIGIQIMGQYGDDQGVL 480
                 ****************98777665555443.679999999****...****************987...*************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       550  (0.0306766); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3437.64
//
Query:       CCD24024.1  [L=403]
Description: hypothetical protein NDAI_0C03640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-19   70.4  24.6    2.2e-19   70.1  24.6    1.2  1  Dynamitin      Dynamitin
  ------ inclusion threshold ------
       0.21   11.4   7.3       0.92    9.4   0.9    3.2  3  TRAF_BIRC3_bd  TNF receptor-associated factor BIRC3 binding d
       0.27   11.2   2.3        2.3    8.3   0.3    2.7  2  Feld-I_B       Allergen Fel d I-B chain
       0.33   10.9   0.1       0.33   10.9   0.1    4.8  5  YueH           YueH-like protein
        0.4   10.6   2.6       0.23   11.4   0.7    1.6  2  GvpL_GvpF      Gas vesicle synthesis protein GvpL/GvpF
       0.46   10.5   3.3         16    5.6   0.3    3.7  3  MCC-bdg_PDZ    PDZ domain of MCC-2 bdg protein for Usher synd
          7    6.5   7.8          3    7.7   0.2    4.2  4  DASH_Dam1      DASH complex subunit Dam1
        8.9    6.8   7.3         14    6.2   0.2    3.4  3  DUF4140        N-terminal domain of unknown function (DUF4140


Domain annotation for each model (and alignments):
>> Dynamitin  Dynamitin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1  24.6   9.7e-23   2.2e-19     105     388 .]      83     388 ..      44     388 .. 0.82

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 9.7e-23
   Dynamitin 105 eeleeEvekakeaakeseeeeldpvela.eqleslqkqLeel...............eellgedsaasltdaqealakrllsqleefkeskaaskkk.. 185
                 e+le++++k ++++  s++e+l ++++   ++++l+k+L+++               ++ll e+ ++s+++ +++l k l ++l+e             
  CCD24024.1  83 EQLESQLKKYNATK--STKEDLRKMQIDkPEISTLKKELDKIslqelddmkrestmeDKLLFEKIQKSMQSDEKTLLKGLHDKLSEH---------Vse 170
                 56666666655554..48999999999989************774444444333333333333333344444444444444444444.........033 PP

   Dynamitin 186 ......eksnkityelyyapeqeksqqlakiaelekRLaeLEklvGlssesldelsanlkprplletlsrLeaklslL..qtahLDaierRlksllael 276
                       +++n  +y l+    + +s++l +i +le+R+++LE+++G  +++ +++ ++  ++p++++l+++ ++l l+  ++  L + ++ l+++ ++ 
  CCD24024.1 171 esnhdnNNNNNDKYILKLPNIEFNSTELYRILNLEERIHKLESSLGHIKDE-PNICQSSFEEPIMTQLNKIYRQLILIenNEPVLNNFQKSLTEINKKY 268
                 44455577888899999888889**************************99.66666667******************988889999999999999998 PP

   Dynamitin 277 delaekreaiekadaeg........qekKIneLYellkrldplspilPavldRLrsLraLHeeAaefsqtLteleeeqkeiseelkslkelLekveesl 367
                 +     +++ +++d ++        q++KI++LY++  +  + ++ilP++ +R++  +++  + +e  q+L+++++  ++++++ ++++ +++k+ e++
  CCD24024.1 269 EDSLLGKNINKNNDLQElainnivnQKTKIDNLYKFYDENKHYADILPKLSERMKLFKKVNMKVSESFQMLQNIDRMIADVASTTEEWNCTINKIVEKI 367
                 8777777555555555599999**9************************************************************************** PP

   Dynamitin 368 kenletvkkNvesleerikkL 388
                 ++ + +v+kN+e+l+++i++L
  CCD24024.1 368 SSQEIIVNKNFEKLNDKIQNL 388
                 ******************986 PP

>> TRAF_BIRC3_bd  TNF receptor-associated factor BIRC3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2     0.017        39      20      57 ..     112     151 ..     110     157 .. 0.70
   2 ?   -1.7   0.0       1.1   2.5e+03      48      62 ..     201     215 ..     197     216 .. 0.73
   3 ?    9.4   0.9   0.00041      0.92      20      60 ..     357     397 ..     342     398 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.017
  TRAF_BIRC3_bd  20 VsVLnrEversstt.ieaverqrrld.qekieaLekKvrq 57 
                    +s+L++E +++s++ +++++r +  + +   e ++k +++
     CCD24024.1 112 ISTLKKELDKISLQeLDDMKRESTMEdKLLFEKIQKSMQS 151
                    799*******987549999998875404445666666555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
  TRAF_BIRC3_bd  48 ieaLekKvrqLerti 62 
                    i  Le+++++Le ++
     CCD24024.1 201 ILNLEERIHKLESSL 215
                    556888888888776 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00041
  TRAF_BIRC3_bd  20 VsVLnrEverssttieaverqrrldqekieaLekKvrqLer 60 
                     ++ n+ ve++s++   v++  ++  +ki+ Le K++ L r
     CCD24024.1 357 NCTINKIVEKISSQEIIVNKNFEKLNDKIQNLEAKLETLTR 397
                    5999**********************************988 PP

>> Feld-I_B  Allergen Fel d I-B chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.3     0.001       2.3      18      40 ..      84     106 ..      78     108 .. 0.93
   2 ?    1.6   0.1      0.12   2.7e+02      27      41 ..     133     147 ..     114     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.001
                 HHHHHHHHTT--HHHHHHHHHHH CS
    Feld-I_B  18 lLnaeLslvnaTeeEkeAleKiQ 40 
                  L+++L+++naT+  ke l+K+Q
  CCD24024.1  84 QLESQLKKYNATKSTKEDLRKMQ 106
                 5999*****************99 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.12
                 T--HHHHHHHHHHHH CS
    Feld-I_B  27 naTeeEkeAleKiQd 41 
                 ++T e k  +eKiQ 
  CCD24024.1 133 ESTMEDKLLFEKIQK 147
                 689999*******95 PP

>> YueH  YueH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.059   1.3e+02      44      67 ..      76      99 ..      68     106 .. 0.79
   2 ?    2.7   0.3     0.051   1.2e+02      39      65 ..     146     172 ..     141     175 .. 0.88
   3 ?   10.9   0.1   0.00015      0.33      20      64 ..     177     222 ..     173     226 .. 0.90
   4 ?   -0.6   0.1      0.56   1.3e+03      44      73 ..     248     277 ..     243     280 .. 0.82
   5 ?   -3.0   0.4       3.1   6.8e+03       6      23 ..     290     308 ..     289     315 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.059
        YueH 44 eekeelaerLessLkkvleeeeae 67
                 +  ++ae+Les+Lkk   ++ ++
  CCD24024.1 76 PDMMKVAEQLESQLKKYNATKSTK 99
                578899*********998877765 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.051
        YueH  39 eisyeeekeelaerLessLkkvleeee 65 
                 + s++ ++++l + L+  L++++ ee 
  CCD24024.1 146 QKSMQSDEKTLLKGLHDKLSEHVSEES 172
                 558999****************99986 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00015
        YueH  20 enkkeerilvAiPdleW.SieisyeeekeelaerLessLkkvleee 64 
                 +n ++++ ++  P++e  S+e+   +++ee +++LessL + ++e 
  CCD24024.1 177 NNNNNDKYILKLPNIEFnSTELYRILNLEERIHKLESSLGHIKDEP 222
                 67789999*******9779********************9998875 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.56
        YueH  44 eekeelaerLessLkkvleeeeaeeLakki 73 
                 e++e + ++ ++sL++  ++ e   L k+i
  CCD24024.1 248 ENNEPVLNNFQKSLTEINKKYEDSLLGKNI 277
                 6678889999*****999999988888887 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 3.1
        YueH   6 liisgkkma.nVYlyenkk 23 
                 +i+++k+++ n Y +   +
  CCD24024.1 290 NIVNQKTKIdNLYKFYDEN 308
                 5667777777999775433 PP

>> GvpL_GvpF  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7    0.0001      0.23     108     197 ..      81     182 ..      75     269 .. 0.82
   2 ?   -2.6   0.0       1.8   4.1e+03     128     135 ..     377     384 ..     307     401 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
   GvpL_GvpF 108 lagkvEygvkvlwde...ealleelleedpelrelreeieaases......gtayllrkrlgqrleealeerreelaeeleeaLaplaeevrerepqd. 196
                 +a++ E ++k +      +++l+++  ++pe++ l++e+++ s +        + ++ k l +++++ +++ +++l + l+++L+++++e + +++ + 
  CCD24024.1  81 VAEQLESQLKKYNATkstKEDLRKMQIDKPEISTLKKELDKISLQelddmkRESTMEDKLLFEKIQKSMQSDEKTLLKGLHDKLSEHVSEESNHDNNNn 179
                 55555556655555434466778888899999999999999988888999866899999*******************************999998875 PP

   GvpL_GvpF 197 ..e 197
                   +
  CCD24024.1 180 nnD 182
                 551 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.8
   GvpL_GvpF 128 elleedpe 135
                 + ++ +++
  CCD24024.1 377 NFEKLNDK 384
                 22222222 PP

>> MCC-bdg_PDZ  PDZ domain of MCC-2 bdg protein for Usher syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.056   1.2e+02      27      40 ..      82      95 ..      78      98 .. 0.86
   2 ?   -0.8   0.0       0.7   1.6e+03      38      61 ..     192     215 ..     175     218 .. 0.73
   3 ?    5.6   0.3    0.0073        16       1      18 [.     380     397 ..     380     401 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.056
  MCC-bdg_PDZ 27 seeLsldlgkaEsn 40
                 +e+L  +l+k+++ 
   CCD24024.1 82 AEQLESQLKKYNAT 95
                 799*********75 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.7
  MCC-bdg_PDZ  38 EsnatALvlALeyserlkeayevl 61 
                  E n+t L   L+  er+ +++++l
   CCD24024.1 192 EFNSTELYRILNLEERIHKLESSL 215
                  567777777777788888888776 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0073
  MCC-bdg_PDZ   1 rLksrIeeLkaqnelLsl 18 
                  +L+ +I+ L+a++e L++
   CCD24024.1 380 KLNDKIQNLEAKLETLTR 397
                  79**************97 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.2     5e+03       8      22 ..     204     218 ..     200     222 .. 0.62
   2 ?   -0.2   0.2       0.4     9e+02      18      34 ..     250     266 ..     233     279 .. 0.59
   3 ?   -1.4   0.1      0.93   2.1e+03      14      26 ..     331     343 ..     312     350 .. 0.54
   4 ?    7.7   0.2    0.0013         3       3      24 ..     376     397 ..     374     403 .] 0.86

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.2
   DASH_Dam1   8 LaDsletLdknledL 22 
                 L++ + +L++ l ++
  CCD24024.1 204 LEERIHKLESSLGHI 218
                 566666666666555 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.4
   DASH_Dam1  18 nledLqqihesLsdfNe 34 
                 n   L++ ++sL++ N+
  CCD24024.1 250 NEPVLNNFQKSLTEINK 266
                 44445555555555554 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.93
   DASH_Dam1  14 tLdknledLqqih 26 
                 ++++ ++ Lq+i+
  CCD24024.1 331 KVSESFQMLQNID 343
                 3344555555555 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0013
   DASH_Dam1   3 pafaeLaDsletLdknledLqq 24 
                 ++f++L+D++++L+++le L +
  CCD24024.1 376 KNFEKLNDKIQNLEAKLETLTR 397
                 78****************9976 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.8      0.69   1.6e+03      65      76 ..     101     121 ..      60     140 .. 0.60
   2 ?    2.7   0.0     0.076   1.7e+02      65      93 ..     183     227 ..     149     230 .. 0.75
   3 ?    6.2   0.2    0.0064        14      47      90 ..     358     401 ..     346     403 .] 0.73

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.69
     DUF4140  65 e.........elkalraelee 76 
                 +         e+++l++el++
  CCD24024.1 101 DlrkmqidkpEISTLKKELDK 121
                 122222222245555555544 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.076
     DUF4140  65 e................elkalraeleeledelaaledelaaaea 93 
                 +                ++  l++++++le  l +++de +  ++
  CCD24024.1 183 KyilklpniefnstelyRILNLEERIHKLESSLGHIKDEPNICQS 227
                 055555555555566667889**************9999777665 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0064
     DUF4140  47 atildvqvervpnreaeeeelkalraeleeledelaaledelaa 90 
                 +ti  +  + + ++ ++++  ++l++++++le++l+ l+++++a
  CCD24024.1 358 CTINKIVEKISSQEIIVNKNFEKLNDKIQNLEAKLETLTRDKEA 401
                 55666655555555555556889999999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2639  (0.147192); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 2817.34
//
Query:       CCD24025.1  [L=195]
Description: hypothetical protein NDAI_0C03650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-28   98.7   0.3      6e-28   97.3   0.3    1.8  1  DUF2406   Uncharacterised protein (DUF2406)


Domain annotation for each model (and alignments):
>> DUF2406  Uncharacterised protein (DUF2406)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.3   3.4e-32     6e-28       1      64 []      49     118 ..      49     118 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 3.4e-32
     DUF2406   1 AvseaqPfeqaadklslaalrsiqr.sy.........kDvfGkeiadpDlSNPtRsRdERPLdTIRsFeaaieG 64 
                 Av+eaqPfeqaad    a++++++r sy         +DvfG++i+++D+SNPtR+RdERPLdTIRsFe+a++G
  CCD24025.1  49 AVNEAQPFEQAAD----AFHDNMNRqSYfstdggnvlRDVFGQPIQNADISNPTRARDERPLDTIRSFEYAVSG 118
                 8************....89999999888999*****************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1406.73
//
Query:       CCD24026.1  [L=555]
Description: hypothetical protein NDAI_0C03660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-65  220.0   0.1    6.1e-65  219.7   0.1    1.1  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.7   0.1   3.4e-69   6.1e-65       2     362 ..     146     544 ..     145     545 .. 0.87

  Alignments for each domain:
  == domain 1  score: 219.7 bits;  conditional E-value: 3.4e-69
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde 95 
                    d++nL+sn++l++++ ++l  vak++++  g++a+g++ +yg++d++++le++la+f+g        +e+av++g++++ + ++l ++ k  +gd+
     CCD24026.1 146 DLFNLSSNNFLQLTSDEELVQVAKKTIKnyGVGACGPAGFYGNQDVHYALEYDLAQFFG--------TEGAVLYGQDFCVASSVLSAFNK--RGDV 231
                    789*************6666666777677******************************........**********************9..**** PP

                    EEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTE.......TEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEE CS
  Aminotran_1_2  96 ilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnk.......ktkvilvesphNPtGtvatleeleklldlakkynlll 184
                    i+++d++    +n+l+ls+++v++++       h+++++le++l+e++e ++       ++k+i++e+ + ++G++a+l+el+ l   ++ky+++l
     CCD24026.1 232 IVADDQVSLALQNALQLSRATVYYFE-------HNNMQSLENLLAELTEMEAndkppaiPRKFIVTEGLFQNSGDIAPLPELTNL---KEKYKFRL 317
                    **************************.......****************999*********************************...******** PP

                    EEEETTTTCBSSSS.HTHHH...HGGSTTSTT.EEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 185 fvDeaYagfvfgsl.davat...ranveeepn.llivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdallkqsele 275
                    fvDe+++++v+g++ +       ++++ ++   +++vgsl++a G+ G   G++lg+a ++ ++r+ s+++++s++l+a++++ +s +l++ +  +
     CCD24026.1 318 FVDETFSIGVLGETgR---GlpeHFGMIRASSiDVTVGSLATAIGSSG---GFCLGDAVMAHHQRIGSNAYCFSASLPAYTTTTASRVLQILNTDK 407
                    ************7642...1456******999****************...*****************************************9666 PP

                    HHHHHHHHHHHHHHHHHHHS.....TEEEECCS.CSSEEEEEETHH.................................CHHHHHHH......... CS
  Aminotran_1_2 276 emrqrlqkrrkelrdeLael.....glkvlasq.sgmflltdlsae.................................takelskk......... 323
                      +++lq+ +k ++d + ++      +kv++ + s ++++++l++                                  +      +         
     CCD24026.1 408 VIVSKLQQFSKMVFDFFVNDldlqkIIKVTSFElSPVLHFRLLPEIrkakfnytaeelfetisrlqkrnattkyiepyeN------Eerflqsvvd 497
                    66666666666666666655656788889998999*****999988999****666666666666655555555555554......0555555999 PP

                    .HHHTCTEEEEEGGGGTS.......TTEEEEEC.TTS-HHHHHHHHHH CS
  Aminotran_1_2 324 .Lleevgvyvtpgtsftv.......pgrlRitv.Aglteeeleelvea 362
                      ++++g++++++t+          p+ l+i++ A ++eeel++++ a
     CCD24026.1 498 aAIKKHGILISRNTIILQhetlpivPS-LKICCnAKMDEEELRKACVA 544
                    977777777777777777777777466.******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4170.74
//
Query:       CCD24027.1  [L=535]
Description: hypothetical protein NDAI_0C03670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     5e-127  424.8   0.2     6e-127  424.5   0.2    1.1  1  Peptidase_S10    Serine carboxypeptidase
    3.1e-15   56.8   1.8      7e-14   52.4   1.8    2.4  1  Carbpep_Y_N      Carboxypeptidase Y pro-peptide
  ------ inclusion threshold ------
       0.11   12.6   0.0       0.23   11.6   0.0    1.5  1  UBA_2            Ubiquitin associated domain (UBA)
       0.13   11.5   0.0       0.22   10.8   0.0    1.3  1  V_cholerae_RfbT  Vibrio cholerae RfbT protein


Domain annotation for each model (and alignments):
>> Peptidase_S10  Serine carboxypeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.5   0.2  1.3e-130    6e-127       7     419 .]     125     531 ..     118     531 .. 0.92

  Alignments for each domain:
  == domain 1  score: 424.5 bits;  conditional E-value: 1.3e-130
                    -SSEEEEEEEECSTTTTEEEEEEEEE-SSGTTTS-EEEEE--TTTB-THHHHHHTTSSEEEETTTTSEEEE-TT-GGGCSEEEEE--STTSTT-EE CS
  Peptidase_S10   7 vnfkqysGYldveeeedkslFYwfveseknpeedplvlWLnGGPGCsSldGlleElGPfrvnkdstkkleenpysWnkvanvlfldqPvGvGFSys 102
                    +++kqy+GYldv+ e+dk++F+wf+es++ p++dp++lWLnGGPGCsS++Gl++ElGP ++   ++ k+ +n++sWn++a+v+fldqPv+vGFSys
     CCD24027.1 125 PDVKQYTGYLDVK-EDDKHFFFWFFESRNAPKNDPIILWLNGGPGCSSMTGLFFELGPSSIG--NKIKPIYNNHSWNSNASVIFLDQPVNVGFSYS 217
                    789**********.78**********************************************..569***************************** PP

                    TTSSGS--SHHHHHHHHHHHHHHHHHHSTCG.TTSEEEEEEETTHHHHHHHHHHHHHTHCCH--SSTSEEEEEEEESE-SBHHHHHCCHHH....H CS
  Peptidase_S10 103 ntksdvktddeevaedlyefLkkffekfpey.ksrdfyitGESYaGhyvPalakeilkknkkekkkkinLkGlligNglideaeqvnsyve....f 193
                      +    +++  +++d+y fL+ ffe+fpey   +df+i+GESYaGhy+P++a+eil++  +e  +++nL++++igNgl+d+ +q++ y +     
     CCD24027.1 218 GGSGV--SNTVAAGKDVYSFLQLFFEQFPEYaSGQDFHIAGESYAGHYIPVFASEILSHDVEE--RNFNLTSVMIGNGLTDPLTQYKFYEPmacgK 309
                    98776..89**********************4458************************9775..8*************************44444 PP

                    HHHTTSSHHHHHHHHHHHHEETHHHHHHHHHHHHHHHHHHHHH..........HHHHCHCEETTETTSEETTSSEEHHHCTTCCCCTTTTTCHHHH CS
  Peptidase_S10 194 ayehgliseeeyeslkkacekkeeleqesekcanllekaskva..........vekenkglnvynileeccklkaelkksstdaqggedpydesyv 279
                      e +++s +e++ ++++    +++ + +++c+++ + +s+v           + ++ +g+nvy+i+++c             + g+ ++   +++
     CCD24027.1 310 GGEPAVLSPQECDAMTDSL---DRCLSLIDSCYKSESVWSCVPasiycnnaqlAPYQRTGRNVYDIRKDC-------------EGGNLCYPGLQNI 389
                    445579*********9999...9*****************9879877777666555666***********.............678999999**** PP

                    HHHHTSHHHHHHTT--TTSSS--SB-HHH...HHHCTCCC-SBCHHHHHHHHHTT-EEEEEEETT-STT-HHHHHHHHHHTECTTECCSCCCEEEE CS
  Peptidase_S10 280 ekylnkkeVrkalhvnasvkkweecndsv...feqleddisksveeileellesglrvliynGdvDlicnvlgteawikklelsgkkefrpwevsp 372
                    ++yln + V++a++  a+v+++e+cn ++   f +++d+ +k++++ ++ +l++gl+vl+y+Gd+D+icn+lg++aw++ l ++ ++ef+++ v++
     CCD24027.1 390 DDYLNLDYVQEAIG--AEVDHFESCNFDInrnFLFNGDW-MKPYHKAVTGILNQGLPVLVYAGDKDFICNWLGNRAWTDVLPWKDSEEFAKQPVRN 482
                    **************..679**********9876665555.5*****************************************************99 PP

                    ..TTTCESEEEEEEEETTEEEEEETT--SSHHHHSHHHHHHHHHHHHTT CS
  Peptidase_S10 373 ..kkengqvaGyvkeyenltfltvkgaGHmvPedkpeealqllerfisg 419
                       + +++vaG+vk+++nlt+l+v+++GHmvP+d p++al++l++++sg
     CCD24027.1 483 wtASITDEVAGEVKNFGNLTYLRVFNGGHMVPYDVPRNALSMLTEWVSG 531
                    666789****************************************985 PP

>> Carbpep_Y_N  Carboxypeptidase Y pro-peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   1.8   1.6e-17     7e-14       1     125 []       1     108 [.       1     108 [. 0.85

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.6e-17
  Carbpep_Y_N   1 mklsts....lllgaassatslqalsiqnplkdlQqalklelnydtkklsklleeeekknnvfekiskvlneplkeltseakkiWsemelkfPdavsk 94 
                  mkl  +    l+ g+++s t +++ls+q+p+           ++d    + ll      n ++++     ne l++l++++k +W+++  +fP++v +
   CCD24027.1   1 MKLNITpqaaLVSGLTLSSTLVNGLSFQHPF-----------AFD----QDLL------NIAIKTLGFDRNEILGSLSQDIKSAWEDLPRLFPKQVAE 77 
                  7777777777999999999999999999999...........344....2223......334666677779*************************** PP

  Carbpep_Y_N  95 lkfktkpkkketkksdkfWdfvVkdakvpNh 125
                  l++ tkpk+++++ +++ WdfvV+++++  +
   CCD24027.1  78 LQYFTKPKFPQKINKKSHWDFVVQNDQITDY 108
                  **************************99876 PP

>> UBA_2  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     5e-05      0.23       2      30 ..      34      62 ..      33      77 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5e-05
       UBA_2  2 dedvvsaLsktMGYdkdeIieaLekaeks 30
                d+d+ ++  kt+G+d++eI+ +L ++ ks
  CCD24027.1 34 DQDLLNIAIKTLGFDRNEILGSLSQDIKS 62
                788889999**************999887 PP

>> V_cholerae_RfbT  Vibrio cholerae RfbT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     5e-05      0.22       6      38 ..     395     427 ..     391     432 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5e-05
  V_cholerae_RfbT   6 knyvqklikteldaiqsksvhdnrnfiyngefl 38 
                       +yvq+ i +e+d  +s +   nrnf++ng+++
       CCD24027.1 395 LDYVQEAIGAEVDHFESCNFDINRNFLFNGDWM 427
                      68****************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4255.77
//
Query:       CCD24028.1  [L=151]
Description: hypothetical protein NDAI_0C03680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1149.65
//
Query:       CCD24029.1  [L=1122]
Description: hypothetical protein NDAI_0C03690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   9.3e-166  551.9   0.2   9.3e-166  551.9   0.2    1.8  2  DUF3591      Protein of unknown function (DUF3591)
    3.9e-05   23.4   0.4    8.6e-05   22.3   0.4    1.6  1  zf-CCHC_6    Zinc knuckle
  ------ inclusion threshold ------
       0.11   12.7   1.7       0.11   12.7   0.4    1.7  2  zf-CCHC      Zinc knuckle
        2.4    6.2  21.4        4.1    5.4  21.4    1.3  1  DNA_pol_phi  DNA polymerase phi


Domain annotation for each model (and alignments):
>> DUF3591  Protein of unknown function (DUF3591)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  551.9   0.2  2.1e-169  9.3e-166       3     441 .]     515     951 ..     513     951 .. 0.97
   2 ?   -5.6   2.4         3   1.3e+04     397     439 ..    1020    1063 ..    1011    1083 .. 0.61

  Alignments for each domain:
  == domain 1  score: 551.9 bits;  conditional E-value: 2.1e-169
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxx RF
     DUF3591   3 lsnDkaYealkenkqskvrstlgnlkveHSlpAlkLqlpfyktklskkelrsfHrprlkvk.................kkakgkeekellkktkDLslk 84 
                 +snD++Y++lk+++q kvrst++nl++eHSlpAlkLq+p+yk+++ k+++r fHrp++  +                 k++kgk+ ke++++t+DL++ 
  CCD24029.1 515 ISNDNEYDILKRTHQPKVRSTISNLNIEHSLPALKLQSPYYKVSIPKSQVRYFHRPHFGNNirpgtnivfsklkirkrKRDKGKDIKESFASTQDLTIG 613
                 8*********************************************************88889*************9879******************* PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF3591  85 dtskvvllEYseeyPpllsnvGMgsklinYYrkkkekDtsrpklelGetvvlepedksPFlnlGevepgetvqtlennliraPifkhkvkstDFLlirs 183
                 dt+ ++l+EYse++P+ ls++GM++klinYYrk++++Dt rpkl++Get+vl+++dksPF+n+G vepg++v+tl+nn+iraP+fkh+v+ tDFLl+rs
  CCD24029.1 614 DTAPIYLMEYSEQTPLALSKFGMANKLINYYRKTSDQDTLRPKLPVGETHVLGVQDKSPFWNFGFVEPGHIVPTLYNNMIRAPVFKHDVSGTDFLLVRS 712
                 *************************************************************************************************** PP

                 xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF3591 184 tt.kekkkyylreidnlfvvGqtlPlveVpgphsrkvtnfsknrLkviiyrllrkskekrikvedikkafpdqselqiRkrLkefaeyqrkgedsgvWk 281
                 ++ + ++++y+r i++lf+vGqt+P+ e+pgp+srkvt++ ++rL++i+yrll+k + ++i+++ ++k+fpdq+  q+R+++kef++yqr+g d+g+Wk
  CCD24029.1 713 SGhGVSNRFYIRGINHLFAVGQTFPVEEIPGPNSRKVTSMKTTRLRMIVYRLLNKAQGRSISIDPVNKHFPDQDYGQNRQKVKEFMKYQRDGPDKGLWK 811
                 *9999********************************************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF3591 282 lkeeerlpseeeirklvtPEdvcllesmqvgeqrlkdagyakeeeeeeedekkeeskleleeqlapWnttknFlaAtqgkamlqlhGegDPtGrgegfs 380
                 lke+e+l ++e+ rkl+tPE+v+ +e+   g q  +d++  + +++ +           lee+l pWn+tknF++Atq++am+q+hG+gDPtG gegfs
  CCD24029.1 812 LKEGETLLDNEHTRKLITPEQVSEVETTSQGIQFQEDNEWFNFDDKLKR----------LEENLLPWNATKNFINATQMRAMIQIHGAGDPTGVGEGFS 900
                 ****************************************998777654..........89************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF3591 381 fvrtsmKegfkkageskeeklkaeaekkgtdadlrklnvaeqqkvyeeeikkiwraqrisl 441
                 f++tsmK+gf ++g++ +           + ++++++nvaeqqk+ye ei+k w+++ +sl
  CCD24029.1 901 FLKTSMKGGFIRSGSHMDG----------KRSGGHTYNVAEQQKAYEGEISKTWYTHAKSL 951
                 **********655554444..........5689************************9987 PP

  == domain 2  score: -5.6 bits;  conditional E-value: 3
                  xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     DUF3591  397 keeklkaeae.kkgtdadlrklnvaeqqkvyeeeikkiwraqri 439 
                  k+e+l+ ++  +++t++ +    ++ q+k+ ++e++++ ++q++
  CCD24029.1 1020 KAENLDVNKLlEQETTNIGNMEDIEMQKKLLQNELANLEKSQQR 1063
                  33333333333335666666666666777767776666666653 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.4   1.9e-08   8.6e-05       2      24 ..    1088    1110 ..    1087    1121 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.9e-08
   zf-CCHC_6    2 vKCknCGAFGHtarSkrCPmkcw 24  
                   +C  CG  GH  ++k CPm++ 
  CCD24029.1 1088 RRCATCGQVGHIKTNKACPMYNS 1110
                  59******************985 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.7   7.8e+03       8      12 ..     680     684 ..     680     685 .. 0.86
   2 ?   12.7   0.4   2.4e-05      0.11       2      14 ..    1089    1101 ..    1088    1102 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.7
                 SSSST CS
     zf-CCHC   8 epGHi 12 
                 epGHi
  CCD24029.1 680 EPGHI 684
                 89**8 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.4e-05
                  CTSSSSSSSSTTT CS
     zf-CCHC    2 kCynCGepGHiar 14  
                   C +CG++GHi+ 
  CCD24029.1 1089 RCATCGQVGHIKT 1101
                  7*********985 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  21.4   0.00092       4.1     637     717 ..      68     185 ..      46     188 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.00092
  DNA_pol_phi 637 lfedededeeddeeeeeeddeededseedddeeesdedeededdedvdeid.....................................elreklaeal 697
                   fede+e  e++eee +e + e eds++ ++ee+++e+ee+ed+++++e++                                     ++ ++l   l
   CCD24029.1  68 DFEDEEELAEEEEEEGGEGEGEGEDSSSGSEEETTSEEEEEEDEGEEQEEEqkkgsiplslpttspnaipsndpftrdlnddnlildhNFLNALPTNL 165
                  25777777777777777778888888866666555555555555555544456788999888888888888888888888888877776666666666 PP

  DNA_pol_phi 698 gesgededdddsdsDed.mdD 717
                  ++++ +    ++d+D + mdD
   CCD24029.1 166 NDTN-NPMGPEDDNDFQyMDD 185
                  6666.7777777777666888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1624  (0.0905795); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.91u 0.27s 00:00:01.18 Elapsed: 00:00:00.44
# Mc/sec: 7638.55
//
Query:       CCD24030.1  [L=360]
Description: hypothetical protein NDAI_0C03700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-09   36.5   1.9    5.5e-09   35.8   0.3    2.0  2  Cyclin_N  Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.3   3.1e-13   5.5e-09       9     125 ..      42     173 ..      36     175 .. 0.80
   2 ?   -0.9   0.1      0.07   1.3e+03      36      58 ..     184     206 ..     180     269 .. 0.70

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 3.1e-13
                 HHCHTS-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHHHHT..... CS
    Cyclin_N   9 qelkflpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlvyit..... 102
                 +++ +l+ ++ + ++++  ++ + +++ +l ++++++++ ++tl +a+ y+ R+   + ++ +   +++++cL+l++K  e+ + k++d+v ++     
  CCD24030.1  42 RQISKLQ-SKTITDHRSY-NSKKLTIVRYLSDLCVHLSFPRKTLETAIYYYQRYHLFHPFETELTYTLALGCLILSCKQVET-ITKINDIVNLSfvlrn 137
                 4454444.4444344443.4666789*****************************************************999.9*******99999999 PP

                 .............TTSS-HHHHHHHHHHHHHHTTT- CS
    Cyclin_N 103 .............deafteeeilemErliLetLnfd 125
                              +    ++ i ++E+++L+   fd
  CCD24030.1 138 gkplpmtspssavELENMKKRIFNLELKVLKSCSFD 173
                 999988888776533555778888888888876665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.07
                 HHHHHHHHHTT--TTHHHHHHHH CS
    Cyclin_N  36 dwlvevaekfkltpetlflavny 58 
                 +++++  +k++++ ++ +la  +
  CCD24030.1 184 EFIIKFGQKLNFHFQICHLAWII 206
                 58899999999999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2602.80
//
Query:       CCD24031.1  [L=332]
Description: hypothetical protein NDAI_0C03710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-38  129.0  16.1    4.4e-10   39.0   1.0    6.0  6  PPTA      Protein prenyltransferase alpha subunit repeat


Domain annotation for each model (and alignments):
>> PPTA  Protein prenyltransferase alpha subunit repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   8.6e-09   0.00015       2      27 ..      49      74 ..      49      75 .. 0.92
   2 !   39.0   1.0   2.5e-14   4.4e-10       1      28 []      88     115 ..      88     115 .. 0.98
   3 !   33.0   0.4   1.8e-12   3.3e-08       1      28 []     127     154 ..     127     154 .. 0.94
   4 !   29.8   0.1   1.9e-11   3.4e-07       1      27 [.     167     193 ..     167     194 .. 0.95
   5 !   13.0   0.0   3.7e-06     0.066       1      27 [.     211     237 ..     211     238 .. 0.97
   6 ?   -2.6   0.0      0.29   5.2e+03       3      13 ..     306     316 ..     306     316 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.6e-09
                HHHHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA  2 LeltekliekdpkNYsaWnyRrwlle 27
                L+ t++l+e +p  ++aWn Rr +++
  CCD24031.1 49 LKSTTELLEINPEFNTAWNFRRDIID 74
                6779******************9997 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 2.5e-14
                 HHHHHHHHHHH-TT-CHHHHHHHHHHCH CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwllek 28 
                 EL++t+k ++++pk Y++Wn+R w+l++
  CCD24031.1  88 ELKFTMKTLKRFPKVYWIWNHRVWVLSH 115
                 9*************************97 PP

  == domain 3  score: 33.0 bits;  conditional E-value: 1.8e-12
                 HHHHHHHHHHH-TT-CHHHHHHHHHHCH CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwllek 28 
                 EL  +++++e+d +NY+ W+yRr ++++
  CCD24031.1 127 ELFIVNQMLELDSRNYHGWHYRRIVIQN 154
                 78899********************986 PP

  == domain 4  score: 29.8 bits;  conditional E-value: 1.9e-11
                 HHHHHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwlle 27 
                 E+++t+++i+++ +N+saW+ R  l++
  CCD24031.1 167 EFQYTTEKINQNISNFSAWHQRVQLIS 193
                 99********************99986 PP

  == domain 5  score: 13.0 bits;  conditional E-value: 3.7e-06
                 HHHHHHHHHHH-TT-CHHHHHHHHHHC CS
        PPTA   1 ELeltekliekdpkNYsaWnyRrwlle 27 
                 EL+++++++++ ++++ +W y  w +e
  CCD24031.1 211 ELDYITNAMFTGADDQAVWDYICWFIE 237
                 9***********************997 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 0.29
                 HHHHHHHHH-T CS
        PPTA   3 eltekliekdp 13 
                 e+  klie dp
  CCD24031.1 306 EWLAKLIEVDP 316
                 67889**9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1220  (0.0680462); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2444.37
//
Query:       CCD24032.1  [L=884]
Description: hypothetical protein NDAI_0C03720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-82  277.0   8.4      1e-82  277.0   8.4    2.6  3  VPS53_C    Vacuolar protein sorting-associated protein 53 C-t
    1.2e-79  268.0  15.7    1.2e-79  268.0  15.7    2.2  2  Vps53_N    Vps53-like, N-terminal
  ------ inclusion threshold ------
      0.026   14.8   8.6      0.056   13.7   1.7    3.9  4  BORCS7     BLOC-1-related complex sub-unit 7
       0.05   14.3   0.1       0.21   12.3   0.1    2.1  1  CHASE6_C   C-terminal domain of two-partite extracellular sen
       0.13   11.3   0.6       0.29   10.1   0.6    1.5  1  Filo_VP35  Filoviridae VP35
       0.26   11.4   1.8          3    7.9   0.0    3.3  5  DivIVA     DivIVA protein


Domain annotation for each model (and alignments):
>> VPS53_C  Vacuolar protein sorting-associated protein 53 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.1   3.4e+03     159     198 ..      97     136 ..      83     138 .. 0.77
   2 ?   -3.6   0.1       2.8   8.3e+03      57     103 ..     486     532 ..     479     538 .. 0.62
   3 !  277.0   8.4   3.4e-86     1e-82       1     202 [.     605     832 ..     605     833 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
     VPS53_C 159 eetekeatkdlfifkwnkkllaqfeanllriqdpsWkkfi 198
                 ++ +++ tk+l if+  k+l+ ++ +  l iq +s+ +++
  CCD24032.1  97 DNGKNNITKSLTIFQNLKTLVDSYCQCKLLIQSNSYIEMV 136
                 5677888999999999999999998888888887777666 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.8
     VPS53_C  57 llkeilkslpeslseeestqstsakrvkkhidnniekllkfikllvv 103
                  + +++++l ++lse +s+ +  ++ ++k  ++  + l +  +ll+ 
  CCD24032.1 486 YVSTTISQLEDKLSEFSSSPDRISHVFEKTKNTYNDLLARATNLLIY 532
                 55667777777777766666666666666666666666666666665 PP

  == domain 3  score: 277.0 bits;  conditional E-value: 3.4e-86
     VPS53_C   1 kWnflDkvidlitsefleciikLlqpkpPfaslns....krkldvkkvinigeqLlLDvellkeilkslpeslsee........estqstsakrvkkhi 87 
                 kWnflDk+i+li+++f+++iikLl+p++Pf  +n+    krk+dv+++i+igeqLlLD+ellk +l+sl+++++++        ++t sts+kr+++h+
  CCD24032.1 605 KWNFLDKIIELIANDFITRIIKLLEPQTPFLITNTnvikKRKYDVQHTITIGEQLLLDIELLKFTLHSLSNCIVNDrsdvktssSMTISTSRKRFENHV 703
                 7*******************************9999999***********************************999999998888999********** PP

     VPS53_C  88 dnniekllkfikllvvpldspedYletYkrltknnknslvWafilalKgveWdlalWkkywsafklel..............eekeetekeatkdlfif 172
                 d n+e+ll+f+kllv+pl+sp+dY+etY+rl+ nn+++++Wa++++lKgveWdl lWk+y+s+f+l l              e+k+e++++at+++fif
  CCD24032.1 704 DVNVEQLLSFVKLLVAPLNSPDDYFETYRRLCPNNNRNIIWAYCFVLKGVEWDLPLWKNYFSSFHLGLveevapeegnrgdqEKKQEKTNHATNKYFIF 802
                 *********************************************************************************999999999********* PP

     VPS53_C 173 kwnkkllaqfeanllriqdpsWkkfikeel 202
                 +wnkkll++fe+nll+i++p+W +fi+++l
  CCD24032.1 803 QWNKKLLFDFERNLLQINEPNWVNFIRNDL 832
                 ****************************99 PP

>> Vps53_N  Vps53-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.0  15.7   4.1e-83   1.2e-79       3     379 ..       7     385 ..       5     386 .. 0.88
   2 ?   -3.3   1.1       1.1   3.3e+03     252     274 ..     802     824 ..     797     829 .. 0.89

  Alignments for each domain:
  == domain 1  score: 268.0 bits;  conditional E-value: 4.1e-83
     Vps53_N   3 dfsaleyinellpteqslanidelikklqeeikklddeiksvvraqanvgekgkealeeaqkaieelfqkikeikdkaekseemvkeitrdIkqLDiAK 101
                 ++++ e+i+ l+ ++ sl++id ++++ ++    l++ i +        +++     e+    +e++f+++ e+++ ++++e++++++t+ I++LD  K
  CCD24032.1   7 EYDPFEDITSLFSSKDSLNDIDVILERTRNYKLSLQKTITENNS--KTKSQD---GTENDPIIMEKVFKDFVETQTISARTEATISNLTQRISYLDNGK 100
                 7899**********************999987777766654433..323444...455667789*********************************** PP

     Vps53_N 102 knlttsiTtlkrLkmLvtavesleallskrsykeivsllqavlqll.nhFekYkdvekIaeLsesisklkkslksqiledfkeaFssgsqkeketgnll 199
                  n+t+s+T++++Lk Lv+++ +++ l++ +sy e+vs+++++++l+ n+F  +k+v++I++L  sis+lk+++ ++i++ ++ +F++  ++  e  +l 
  CCD24032.1 101 NNITKSLTIFQNLKTLVDSYCQCKLLIQSNSYIEMVSPYRIMCSLAeNTFIPFKSVDEINRLLISISRLKNDTVEKIKSSYSTLFQGNFTSPVEINRLE 199
                 **********************************************9**************************************98888888887776 PP

     Vps53_N 200 ekled.aCrvvdildpsvkeelikwfiekq.LeeykkifreneeaasLdkldrRYawlkrklqdfeekykkiFpadWevaeRltveFckvTrkdlekil 296
                  +l++ a  +vd  d++++ ++i+w i+k+ L e ++if++++ea+sL++l+rR++++k++l++f+  +++ Fp dW+++ +lt +F + T  dl+ +l
  CCD24032.1 200 GQLKNgASVLVDS-DSNMRSKFIDWIIDKKlLYELTEIFQVDDEAGSLENLSRRFIYFKKILNNFNTNFNNSFPDDWKIPSKLTLHFLNLTARDLKILL 297
                 6665515666676.*************986268****************************************************************** PP

     Vps53_N 297 kr................kkkelsvkllllalqsTleFEklldkrFsntiskakkkkekkelafegaisscFephltlyiesqektlsellekfvseek 379
                 kr                 + + s++l++ alqsTl+FEk+++ rFs      k k+e       + +s cFep+l +++++q+k +++++ +++s++k
  CCD24032.1 298 KRelhdkstsasssssssANASNSIDLFMNALQSTLDFEKYINIRFS-----NKFKDES------KKLSGCFEPYLSIWVSHQDKIMKDKMINYLSSPK 385
                 9988665554444433322345689*********************4.....2223333......479***********************99998765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.1
     Vps53_N 252 YawlkrklqdfeekykkiFpadW 274
                 ++w k+ l dfe+ + +i  ++W
  CCD24032.1 802 FQWNKKLLFDFERNLLQINEPNW 824
                 5899**********999999999 PP

>> BORCS7  BLOC-1-related complex sub-unit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   3.7e+03      64      91 ..      19      46 ..      15      58 .. 0.79
   2 ?   13.7   1.7   1.9e-05     0.056      47     101 ..      64     118 ..      38     120 .. 0.90
   3 ?   -0.4   0.3      0.45   1.4e+03      17      60 ..     298     337 ..     291     342 .. 0.77
   4 ?    2.0   0.0     0.082   2.4e+02       7      44 ..     686     723 ..     681     736 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
      BORCS7 64 nteesLkkmsllttelnyqveaisksik 91
                ++++sL+ + +++++  + + +++k i 
  CCD24032.1 19 SSKDSLNDIDVILERTRNYKLSLQKTIT 46
                6899999999999888888888888775 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.9e-05
      BORCS7  47 ilmkaaksfaqqedaienteesLkkmsllttelnyqveaisksikqleevqeqvk 101
                 i++k+ k f+ + + +++te+++  +++ +  l++++++i+ks+  +++++  v+
  CCD24032.1  64 IMEKVFKDFVETQTISARTEATISNLTQRISYLDNGKNNITKSLTIFQNLKTLVD 118
                 79*******************************************9999987765 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.45
      BORCS7  17 KkeLtervevivndissvakqvvkgSksseilmkaaksfaqqed 60 
                 K+eL+++++++ +  ss+a      S+s ++ m+a +s    e+
  CCD24032.1 298 KRELHDKSTSASSSSSSSA----NASNSIDLFMNALQSTLDFEK 337
                 7888888888888888885....568888888888888766655 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.082
      BORCS7   7 ssakalfqeSKkeLtervevivndissvakqvvkgSks 44 
                 +s++     S k+  + v+v+v+++ s +k +v   +s
  CCD24032.1 686 TSSSMTISTSRKRFENHVDVNVEQLLSFVKLLVAPLNS 723
                 5666678899*****************99988765555 PP

>> CHASE6_C  C-terminal domain of two-partite extracellular sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     7e-05      0.21      20      81 ..      25     104 ..      18     105 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7e-05
    CHASE6_C  20 kaaelllerilkYrpeLaekleqakqkill...................keeaaeksekedldpfvqRlVtYLqasqykll 81 
                 + ++++ler ++Y+ +L+++++++++k ++                   +++++++++++++++++qR+ +YL +++++++
  CCD24032.1  25 NDIDVILERTRNYKLSLQKTITENNSKTKSqdgtendpiimekvfkdfvETQTISARTEATISNLTQRI-SYLDNGKNNIT 104
                 567899*********************98899***************99777778889999999***95.99999998876 PP

>> Filo_VP35  Filoviridae VP35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.6   9.8e-05      0.29      48     120 ..      49     116 ..      18     128 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 9.8e-05
                 XXXXXX.XXXXXXTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH CS
   Filo_VP35  48 spklrs.katstddiifeelvvkrtladllivvnrqiidiestlseletrvtelerqlheikpvldmaktleal 120
                 + k++s + t+ d+ii+e++       d+ +  +   + +e+t+s+l++r+  l+++ ++i+  l + + l++l
  CCD24032.1  49 NSKTKSqDGTENDPIIMEKVF-----KDF-VETQTISARTEATISNLTQRISYLDNGKNNITKSLTIFQNLKTL 116
                 334443145777777777777.....333.2223333457899******************9998888777766 PP

>> DivIVA  DivIVA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2         3     9e+03      47      73 ..      23      49 ..      20      61 .. 0.65
   2 ?    7.9   0.0     0.001         3      27      75 ..      65     113 ..      62     125 .. 0.92
   3 ?   -3.3   0.0         3   8.9e+03      28      57 ..     175     204 ..     172     207 .. 0.86
   4 ?   -2.4   0.0       1.6   4.7e+03      41      68 ..     484     511 ..     478     527 .. 0.72
   5 ?    0.0   0.0      0.28   8.3e+02      52      85 ..     553     586 ..     545     593 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3
                HHHCCCCTXXXXXXXXXXXXXXXXXXX CS
      DivIVA 47 kvkeleeklkeykeleetLkktlvvaq 73
                 +++ +  l++ ++ + +L+kt+  + 
  CCD24032.1 23 SLNDIDVILERTRNYKLSLQKTITENN 49
                555666667777777777887775544 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHHHHHHHHHHHHHCCCCTXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  27 LdqvakdyeallkeneelkekvkeleeklkeykeleetLkktlvvaqet 75 
                 +++v kd+ +    +++ ++++++l++++++ ++ ++++ k+l   q+ 
  CCD24032.1  65 MEKVFKDFVETQTISARTEATISNLTQRISYLDNGKNNITKSLTIFQNL 113
                 789****************************************988876 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3
                 HHHHHHHHHHHHHHHHHHHHHHCCCCTXXX CS
      DivIVA  28 dqvakdyeallkeneelkekvkeleeklke 57 
                 +++ ++y +l + n +   ++++le +lk+
  CCD24032.1 175 EKIKSSYSTLFQGNFTSPVEINRLEGQLKN 204
                 678899999999999999999999999986 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.6
                 HHHHHHHHHCCCCTXXXXXXXXXXXXXX CS
      DivIVA  41 neelkekvkeleeklkeykeleetLkkt 68 
                  + + +++++le+kl+e+++  + +++ 
  CCD24032.1 484 TDYVSTTISQLEDKLSEFSSSPDRISHV 511
                 5556778899999999998887777765 PP

  == domain 5  score: 0.0 bits;  conditional E-value: 0.28
                 CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      DivIVA  52 eeklkeykeleetLkktlvvaqetaeevkanakk 85 
                 + ++++y+   +tL++tl++  +  +++  n ++
  CCD24032.1 553 HVRMEDYSRYMTTLRDTLITPDSRDDNTDDNDHE 586
                 678999*************999988888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (884 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.49
# Mc/sec: 5471.53
//
Query:       CCD24033.1  [L=571]
Description: hypothetical protein NDAI_0C03730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     9e-152  506.1   8.9     1e-151  505.9   8.9    1.0  1  Cpn60_TCP1     TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
      0.038   14.3   0.1       0.33   11.3   0.0    2.4  2  Nitro_FeMo-Co  Dinitrogenase iron-molybdenum cofactor
       0.14   11.7   0.0       0.28   10.7   0.0    1.4  1  EAL            EAL domain


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.9   8.9  1.7e-155    1e-151       1     491 []      38     552 ..      38     552 .. 0.97

  Alignments for each domain:
  == domain 1  score: 505.9 bits;  conditional E-value: 1.7e-155
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 l++++ t++GP+G++K++vn++gk+++TnD+at+l+elei hPa+k+lv+a e+q+ e GDGT+ v++LageLl+ +eklia g+  ++ii+gy++a++
  CCD24033.1  38 LHQMCLTSMGPCGRNKIIVNHMGKITITNDAATMLRELEIVHPAVKVLVMATEQQKIELGDGTNLVMVLAGELLNVCEKLIALGLSAVEIIQGYNMAKN 136
                 679999********************************************************************************************* PP

                 HHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHH.HCHCCCS....EECSCCCEECCCCEECECTTSEEESEEEESS--SST CS
  Cpn60_TCP1 100 kaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAv.klieene....keldlgrikvvkieggsledselveGlvldkgvlsp 193
                  +l++L++  v+  ++++d+++L+k+++ ++ sk+   e + ls+lv+dAv +++++++      +++++i+vvki ggsl++s++++G+v+++++ ++
  CCD24033.1 137 FTLQELDKLVVDDIVDKNDKSQLIKIIKPVIASKQFGFE-DLLSDLVADAVsHVLPKTSqstnPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGH 234
                 ******99999999999*****************88888.****************999999999*********************************9 PP

                 TSSCEE...ECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHH CS
  Cpn60_TCP1 194 dmpkkl...enakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerl 289
                    k+l   e+ kv+++ ++L+i++tetk+tv l++a+e+ +++k eekq++ ++++i+++gv+++++  g+ +lalh+l+++gil+l+  +k++l+r+
  CCD24033.1 235 --VKSLeggEQHKVAVFVCPLDIANTETKGTVLLHNAQEMMDFSKGEEKQIDAMMKEIADMGVKCIIAGAGVGELALHYLNRYGILVLKVPSKFELRRI 331
                 ..55555569***************************************************************************************** PP

                 HHHHT--EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEE..CESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHH..HHEEEETTTCHHHHHH CS
  Cpn60_TCP1 290 akatGatavssledltpeelGtakkveeekigsekttiie..evksgkiatillrgatdtvldeieraiedAlnvvknaie..dekvvpGGGatelela 384
                 ++++Gat++ +l+ +tpeelG +++v++ +ig +++t+++  + + +k+ati+lrgat++ ld+iera++d+++++k +++   +k++pG+Gate+el 
  CCD24033.1 332 CRVCGATPLPRLGAPTPEELGVVETVKTMEIGGDRVTVFKqeSNEISKTATIILRGATQNNLDDIERAVDDGVSAIKGLMKpsGGKLLPGAGATEIELV 430
                 ***************************************96544899*********************************976789************* PP

                 HHHHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHH............HTTXTTEEEETTTTC...EEECCCCTXEEEHHHHHH CS
  Cpn60_TCP1 385 kklkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlaklraah............nkgekelgidvesge...iidlveagvvDplkvkrq 468
                 +++ ++ ++++g  qlai++fa A+ev+p+tLae aGld +evl +l+aah            +++    gid+  ++   ++d+ e+gv+D+l++k+ 
  CCD24033.1 431 SRITKFGEKTPGLLQLAIKQFALAFEVVPRTLAETAGLDVNEVLPNLYAAHtmtddeanepssQNDCLFKGIDTLGETsegVKDIREDGVYDMLATKKF 529
                 *******************************************************999999877777999***98888889****************** PP

                 HHHHHHHHHHHHHCEEEEEXXXX CS
  Cpn60_TCP1 469 alksAteaastiLrideiikakk 491
                 a+++Ateaa+t+L+id+ii+akk
  CCD24033.1 530 AINVATEAATTVLSIDQIIMAKK 552
                 ********************996 PP

>> Nitro_FeMo-Co  Dinitrogenase iron-molybdenum cofactor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.29   1.7e+03      35      73 ..      17      56 ..       7      74 .. 0.79
   2 ?   11.3   0.0   5.5e-05      0.33      17      82 ..     255     323 ..     253     330 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.29
                   CCCTSSCSSTHHHHHHHH.TT-SEEEESSSCHHHHHHHCT CS
  Nitro_FeMo-Co 35 aadaegggggklaqllae.egvdvvivgkiGpralaklea 73
                    +++ + ++g++ +++a+ +  + +   ++Gp+ ++k+  
     CCD24033.1 17 GYNSYSNADGQINKSIAAvRELHQMCLTSMGPCGRNKIIV 56
                   5666677888999999999999999999999999998765 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5.5e-05
                    EEEESSSCEEEEEEEE.GCCCTSSCSSTHHHHHHHH...TT-SEEEES.SSCHHHHHHHCTTTSEEEES- CS
  Nitro_FeMo-Co  17 iyeveegevkivenrveeaadaegggggklaqllae...egvdvvivg.kiGpralakleaagievykga 82 
                    i+++e+++  +++n  +e  d ++g++++++++++e    gv+ +i+g ++G+ al+ l++ gi v+k++
     CCD24033.1 255 IANTETKGTVLLHNA-QEMMDFSKGEEKQIDAMMKEiadMGVKCIIAGaGVGELALHYLNRYGILVLKVP 323
                    678888888888998.66666666777777766665522777888886379***************9974 PP

>> EAL  EAL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.7e-05      0.28     135     179 ..     282     325 ..     269     330 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.7e-05
                 HHH.HHHHHHHCTT-EEEEEEETSSTCCCHHHCCC--SEEEE-HH CS
         EAL 135 alqeevlarLralGirialddfgtgysslsylarlppdiiKldrs 179
                 ++  + +++++++G+++ ++++g g+ +l+yl r+ + ++K+ + 
  CCD24033.1 282 QI-DAMMKEIADMGVKCIIAGAGVGELALHYLNRYGILVLKVPSK 325
                 33.478899***************************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       532  (0.0296726); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4073.70
//
Query:       CCD24034.1  [L=677]
Description: hypothetical protein NDAI_0C03740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-32  108.5  11.1    7.5e-05   22.2   0.1    9.2  9  PUF           Pumilio-family RNA binding repeat
  ------ inclusion threshold ------
      0.035   14.2   0.2       0.12   12.5   0.2    2.0  1  FANCI_S1-cap  FANCI solenoid 1 cap
      0.066   13.7   0.0        5.6    7.5   0.0    2.6  2  HMA           Heavy-metal-associated domain


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1   0.00064       3.8       3      35 .]      98     130 ..      96     130 .. 0.92
   2 !   17.2   0.0   4.8e-07    0.0029       4      27 ..     135     159 ..     132     167 .. 0.79
   3 !   17.8   0.1   3.3e-07    0.0019       1      27 [.     196     222 ..     196     226 .. 0.87
   4 !   11.5   0.0   3.2e-05      0.19       5      33 ..     298     326 ..     296     328 .. 0.85
   5 !   12.0   0.0   2.2e-05      0.13       4      28 ..     345     369 ..     342     376 .. 0.81
   6 !   22.2   0.1   1.3e-08   7.5e-05       1      35 []     379     414 ..     379     414 .. 0.95
   7 ?   -1.5   0.0      0.41   2.5e+03      18      28 ..     498     508 ..     496     512 .. 0.78
   8 ?    1.1   0.1     0.062   3.7e+02      16      27 ..     535     547 ..     535     553 .. 0.77
   9 !   17.0   0.0   5.7e-07    0.0034       6      32 ..     563     590 ..     561     593 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00064
                 GGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   3 kgnlvqLstdqyGnyvvQkllehateeqkklil 35 
                 kg+ ++L+t q  + ++++l+  ++ +q k ++
  CCD24034.1  98 KGKELKLVTSQICSKLMERLILECDDTQLKTLF 130
                 88999***********************99876 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 4.8e-07
                 GGHHHHHTSTTHHHHHHHHHHH.SC CS
         PUF   4 gnlvqLstdqyGnyvvQklleh.at 27 
                 g +  +++++y+++v+++ll + + 
  CCD24034.1 135 GVFFNMACHKYASHVLETLLVRsTA 159
                 66889***************98555 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 3.3e-07
                 HHGGGHHHHHTSTTHHHHHHHHHHHSC CS
         PUF   1 sikgnlvqLstdqyGnyvvQkllehat 27 
                 ++k++l +++++qy+++v++ ++  ++
  CCD24034.1 196 ELKPHLKDMVNHQYASHVLRLIILILS 222
                 689******************998744 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 3.2e-05
                 GHHHHHTSTTHHHHHHHHHHHSCHHHHHH CS
         PUF   5 nlvqLstdqyGnyvvQkllehateeqkkl 33 
                 ++ ++++d+ ++ v+Q ++++ + +++++
  CCD24034.1 298 KFREYCVDKVASPVIQLIIQVEGIFDRDR 326
                 7889****************988777765 PP

  == domain 5  score: 12.0 bits;  conditional E-value: 2.2e-05
                 GGHHHHHTSTTHHHHHHHHHHHSCH CS
         PUF   4 gnlvqLstdqyGnyvvQkllehate 28 
                  + ++L +d+ G++++++++  a  
  CCD24034.1 345 AFMEYLLSDPVGSHFLENVIGFARV 369
                 6789****************87554 PP

  == domain 6  score: 22.2 bits;  conditional E-value: 1.3e-08
                 HHGGGHHHHHT.STTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   1 sikgnlvqLst.dqyGnyvvQkllehateeqkklil 35 
                 ++k+++++L++ d  G++v+Q ll+h++++++k il
  CCD24034.1 379 YMKDRILKLAKrDTTGSFVIQSLLQHLKSKEVKEIL 414
                 599****************************99996 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 0.41
                 HHHHHHHHSCH CS
         PUF  18 vvQkllehate 28 
                 +++kl+++ ++
  CCD24034.1 498 FLEKLIDYDDK 508
                 799***98654 PP

  == domain 8  score: 1.1 bits;  conditional E-value: 0.062
                 HHHHHHHHHH.SC CS
         PUF  16 nyvvQklleh.at 27 
                 ++vv+++l++  +
  CCD24034.1 535 SHVVEHVLQTkRV 547
                 8*******98444 PP

  == domain 9  score: 17.0 bits;  conditional E-value: 5.7e-07
                 HHHHHTSTTHHHHHHHHHHH.SCHHHHH CS
         PUF   6 lvqLstdqyGnyvvQklleh.ateeqkk 32 
                 +v ++++ y+++++ kl+e  a+++ +k
  CCD24034.1 563 VVNMACNAYASHIMDKLWEFtAKLTLYK 590
                 899****************999998877 PP

>> FANCI_S1-cap  FANCI solenoid 1 cap
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   1.9e-05      0.12       1      33 [.     380     414 ..     380     417 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.9e-05
  FANCI_S1-cap   1 mdqkIlsLaaedstee..LqkfLqtLkedeLteli 33 
                   m+++Il La++d+t     q+ Lq Lk +e  e++
    CCD24034.1 380 MKDRILKLAKRDTTGSfvIQSLLQHLKSKEVKEIL 414
                   99***********987447***********99887 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.019   1.1e+02       5      20 ..     138     153 ..     136     156 .. 0.91
   2 ?    7.5   0.0   0.00094       5.6       4      23 ..     563     582 ..     562     584 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.019
         HMA   5 sgmhCagCaakvekvL 20 
                 ++m C++ a++v ++L
  CCD24034.1 138 FNMACHKYASHVLETL 153
                 69**********9998 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00094
         HMA   4 vsgmhCagCaakvekvLsel 23 
                 v +m C + a+++++ L+e+
  CCD24034.1 563 VVNMACNAYASHIMDKLWEF 582
                 88****************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1577  (0.0879581); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4549.64
//
Query:       CCD24035.1  [L=215]
Description: hypothetical protein NDAI_0C03750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-86  287.5   7.6    7.2e-86  287.3   7.6    1.0  1  DUF3294      Protein of unknown function (DUF3294)
  ------ inclusion threshold ------
      0.066   13.3   1.7          7    6.8   0.0    3.1  3  Tricorn_C1   Tricorn protease C1 domain
      0.069   13.4   7.0       0.14   12.3   0.4    2.3  2  ArlS_N       ArlS sensor domain
      0.087   12.4   2.1       0.67    9.4   0.3    2.0  2  Mu-like_Pro  Mu-like prophage I protein
       0.13   12.7   1.1        0.3   11.5   1.1    1.7  1  DUF4277      Domain of unknown function (DUF4277)
       0.19   12.1   5.2      0.049   13.9   0.8    2.2  2  SbcD_C       Type 5 capsule protein repressor C-terminal doma
       0.88    9.4   5.5        2.2    8.1   0.7    2.1  2  PCRF         PCRF domain
        3.6    8.1  15.5       0.36   11.3   5.0    2.6  2  DUF16        Protein of unknown function DUF16
        7.5    6.6  12.9       0.86    9.7   2.4    2.2  2  UPF0242      Uncharacterised protein family (UPF0242) N-termi


Domain annotation for each model (and alignments):
>> DUF3294  Protein of unknown function (DUF3294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.3   7.6   3.6e-89   7.2e-86       1     213 []       1     215 []       1     215 [] 0.99

  Alignments for each domain:
  == domain 1  score: 287.3 bits;  conditional E-value: 3.6e-89
     DUF3294   1 mseeleelkkqveeLselvkkqskliaktGqqvlelqvkkqkedvkkldskka.kkkaskldssdyatneDlvqLVgELQgqLdlleersirRlvNstk 98 
                 m++ele+lkk+v++L++lvkkq++li++tG++v++lq+++q++dv+k+d++++ k++++ +d +d+atn Dlv+LV+ELQg+L+ +eersirR+vNstk
  CCD24035.1   1 MTTELEQLKKKVNDLEALVKKQTLLISTTGKNVMQLQLNQQRNDVQKFDETFNaKNNVPPIDPTDFATNGDLVELVAELQGELNRIEERSIRRVVNSTK 99 
                 899***********************************************9988999****************************************** PP

     DUF3294  99 tkdkdllaplpnkDgeipele.dslfpktlkefkklddvkliklakFYellpptlkeeeelekllegkveeveiselkdkeiekelkkyseeeldeifd 196
                  + +d+lap+pn Dgeip+le +++fp +l++f+++ dvkl+klakFYe lp+++keee++e+ll+ ++e+v+i++l++kei+kelkk+seee++e+f+
  CCD24035.1 100 LDGNDTLAPMPNPDGEIPSLEqKDWFPISLSDFENIPDVKLYKLAKFYERLPEKVKEEEDYENLLKRQNETVQINDLDEKEIMKELKKFSEEEINEMFN 198
                 *******************98689*************************************************************************** PP

     DUF3294 197 elaRylGlrvrrgtdaW 213
                 e+aR+lG+r+rrgt++W
  CCD24035.1 199 EVARFLGVRSRRGTNIW 215
                 ***************** PP

>> Tricorn_C1  Tricorn protease C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0035         7      44      61 ..      67      84 ..      64      86 .. 0.91
   2 ?    3.1   0.1     0.051     1e+02      27      54 ..     138     165 ..     129     168 .. 0.83
   3 ?    0.7   0.0      0.29   5.7e+02       2      14 ..     191     203 ..     190     206 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0035
                -SHHHHHHHHHHHHHTT- CS
  Tricorn_C1 44 atrdeladllsemlgeLn 61
                at+ +l +l+ e++geLn
  CCD24035.1 67 ATNGDLVELVAELQGELN 84
                7999*************8 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.051
                 HHHHHHHHHHHGGGGG--SHHHHHHHHH CS
  Tricorn_C1  27 vDWeavkerYepllprvatrdeladlls 54 
                 v   ++ + Ye+l ++v++++++++ll+
  CCD24035.1 138 VKLYKLAKFYERLPEKVKEEEDYENLLK 165
                 556678889****************997 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHH CS
  Tricorn_C1   2 aEwaqmfdeawrl 14 
                 +E ++mf+e+ r 
  CCD24035.1 191 EEINEMFNEVARF 203
                 7999999999886 PP

>> ArlS_N  ArlS sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.3     0.027        53      21      81 ..       2      63 ..       1      70 [. 0.74
   2 ?   12.3   0.4   7.2e-05      0.14      23      82 ..     146     200 ..     133     208 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.027
      ArlS_N 21 ttyleekkls.lteeelqesdsllekinekdqtirildkdgkevlevsndspeikftvpfek 81
                tt le+ k++ ++ e l ++++ll + + k+ +   l+++ + v ++ +++++++ ++p  +
  CCD24035.1  2 TTELEQLKKKvNDLEALVKKQTLLISTTGKNVMQLQLNQQRNDVQKFDETFNAKNNVPPIDP 63
                45555555555677777888888888888888888888888888888888888877777776 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 7.2e-05
      ArlS_N  23 yleekklslteeelqesdsllekinekdqtirildkdgkevlevsndspeikftvpfekv 82 
                 ++e+ ++     +++e +++ + ++++++t++i d d ke+++  ++++e++ ++ f+ v
  CCD24035.1 146 FYERLPE-----KVKEEEDYENLLKRQNETVQINDLDEKEIMKELKKFSEEEINEMFNEV 200
                 4555454.....488999999999********************9989998888888765 PP

>> Mu-like_Pro  Mu-like prophage I protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   0.00034      0.67     168     251 ..       7     102 ..       2     108 .. 0.74
   2 ?    2.5   0.1     0.042        85     141     190 ..     152     207 ..     132     213 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00034
  Mu-like_Pro 168 qilaalkalkeek........aavaealglkagaktaeasaevaaLsaka....vDlakyvpveaaqalqaelaalkakiaekeaealiekAlkeG 251
                  q+++++++l++          +  +++++l+ +++ +++++  ++ +ak+    +D++ ++   ++ +l ael+   ++i+e+++ +++++   +G
   CCD24035.1   7 QLKKKVNDLEALVkkqtllisTTGKNVMQLQLNQQRNDVQKFDETFNAKNnvppIDPTDFATNGDLVELVAELQGELNRIEERSIRRVVNSTKLDG 102
                  4555555554444444666765555566666666666666666666666688999**********************************9998887 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.042
  Mu-like_Pro 141 ekekeeek..ellkkllaaLgleedateeqilaalkalkeek.....aavaealglk 190
                  ek keee+  +llk+  +   +++  +e++i+++lk+ +ee+     ++va++lg++
   CCD24035.1 152 EKVKEEEDyeNLLKRQNETVQINDL-DEKEIMKELKKFSEEEinemfNEVARFLGVR 207
                  3332222233788888888877754.4899999999999988776666666666665 PP

>> DUF4277  Domain of unknown function (DUF4277)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.1   0.00015       0.3      66     108 ..     156     201 ..     134     202 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
     DUF4277  66 edkplerLlg...egveaehlnddrlgrtLDklyeagvtklfteia 108
                 e+ + e+Ll+   e v+ ++l+++ + + L k+ e +++++f+e+a
  CCD24035.1 156 EEEDYENLLKrqnETVQINDLDEKEIMKELKKFSEEEINEMFNEVA 201
                 44567888864447799999999********************997 PP

>> SbcD_C  Type 5 capsule protein repressor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2       1.2   2.4e+03       4      18 ..       4      20 ..       1      45 [. 0.50
   2 ?   13.9   0.8   2.5e-05     0.049      10      90 ..      81     188 ..      72     193 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.2
      SbcD_C  4 pLrrlkgdleeila..l 18
                +L++lk  + +++a  +
  CCD24035.1  4 ELEQLKKKVNDLEAlvK 20
                45555544444444220 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.5e-05
      SbcD_C  10 gdleeila..............................leepsekpawlevevtdedplpdlr.erlrellegipvevlrlrrtrekasaeleqeaeet 77 
                 g+l  i++                              l    e+++w+ + + d + +pd++  +l + +e +p +v +  ++++  ++++e+++  +
  CCD24035.1  81 GELNRIEErsirrvvnstkldgndtlapmpnpdgeipsL----EQKDWFPISLSDFENIPDVKlYKLAKFYERLPEKVKEEEDYENLLKRQNETVQIND 175
                 555555555555555555566666666666665554432....679*****************9**********8764444333322255666666666 PP

      SbcD_C  78 laelspeevFerf 90 
                 l+e+  ++ +++f
  CCD24035.1 176 LDEKEIMKELKKF 188
                 6666666666655 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.3     0.025        49       2      83 ..       9      87 ..       2     108 .. 0.59
   2 ?    8.1   0.7    0.0011       2.2      23      89 ..     139     203 ..     128     211 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.025
                HHHHTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT......-S-..-GGGTHHHHHHHHHH. CS
        PCRF  2 eeeleelekklsdpevwedqekakklskelaeleeivealeeleealedleeakelle..edeelaelaeeeleelekeleele 83
                ++++++le+ ++++++  +++  + ++ +l++ ++ v++++e  +a++++  ++   +  ++ +l el    ++el+ el+++e
  CCD24035.1  9 KKKVNDLEALVKKQTLLISTTGKNVMQLQLNQQRNDVQKFDETFNAKNNVPPIDPT-DfaTNGDLVEL----VAELQGELNRIE 87
                56777777777777777666665666667777777777777777777777664433.11233333333....444444444443 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0011
                 GSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-..-GGGTHHHHHHHHHH..HHHHH CS
        PCRF  23 kakklskelaeleeivealeeleealedleeakelleedeelaelaeeeleelekeleeleeelkkl 89 
                 k+ kl+k +++l e v++ e++e++l+  +e+ ++   d + +e+++e  +  e+e++e+ +e+ + 
  CCD24035.1 139 KLYKLAKFYERLPEKVKEEEDYENLLKRQNETVQIN--DLDEKEIMKELKKFSEEEINEMFNEVARF 203
                 456788999999999999999999999999966665..44444443443444444555555555544 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   5.0   0.00018      0.36      34      86 ..       3      53 ..       1      58 [. 0.89
   2 ?    1.9   3.1      0.16   3.2e+02      48      96 ..     138     189 ..      55     206 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
                HHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHH CS
       DUF16 34 qrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetle 86
                ++L+++++kv+ l+  ++k++  +++ g+++++l+   ++q+++++k det++
  CCD24035.1  3 TELEQLKKKVNDLEALVKKQTLLISTTGKNVMQLQ--LNQQRNDVQKFDETFN 53
                7899***************************7666..56789999****9997 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHHH...HHHHHHHH.......HHHHHHHHHHHHH CS
       DUF16  48 eqinkleqkvekqgekikelk...veqkaqgeelnkvdetleliletLqkin 96 
                 +++ kl++  e++ ek+ke +   +  k q+e ++  d   + i++ L+k++
  CCD24035.1 138 VKLYKLAKFYERLPEKVKEEEdyeNLLKRQNETVQINDLDEKEIMKELKKFS 189
                 4555666666666666665441113356666666666666666666666654 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   3.1     0.059   1.2e+02      90     137 ..       4      49 ..       1      58 [. 0.65
   2 ?    9.7   2.4   0.00043      0.86      68     146 ..     117     195 ..      71     202 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.059
     UPF0242  90 aleelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelk 137
                 +le+l+++ ++L+  +++++ ++    ++  qLq  l++  +d++++ 
  CCD24035.1   4 ELEQLKKKVNDLEALVKKQTLLISTTGKNVMQLQ--LNQQRNDVQKFD 49 
                 6888888888888887766666666555555555..555556666554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00043
     UPF0242  68 skleekeaklteldeglktkee.aleelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfeelkleleeqLae 146
                   le+k  +  +l+ +++++ + +l +l +  e+L e++++ e   + lk++n+ +q+   + +e ++elk+++ee+++e
  CCD24035.1 117 PSLEQKDWFPISLS-DFENIPDvKLYKLAKFYERLPEKVKEEEDYENLLKRQNETVQINDLDEKEIMKELKKFSEEEINE 195
                 45666777777777.77777666999****************999999999999999999999999***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1703  (0.0949858); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 1624.87
//
Query:       CCD24036.1  [L=483]
Description: hypothetical protein NDAI_0C03760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.7e-113  379.1  37.8   4.7e-113  378.8  37.8    1.1  1  LTV       Low temperature viability protein


Domain annotation for each model (and alignments):
>> LTV  Low temperature viability protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.8  37.8  2.6e-117  4.7e-113       1     383 []       6     453 ..       6     453 .. 0.85

  Alignments for each domain:
  == domain 1  score: 378.8 bits;  conditional E-value: 2.6e-117
         LTV   1 dkkkAvtFqlvhRsqnDpliaDedApqhVLvpvekpnk........kkkkkskklkdleselkse.kevrknegeaakyGiyFDDseYDYmqHLreigs 90 
                 +kk+A+++ +vhR+++Dp+++DedA++hVLv+v++pn+        ++++ +   k +++++k++ k  +kn geaa yGi+FDDs+YDY+qHL++ig+
  CCD24036.1   6 SKKNAQKYVVVHRPHDDPHFYDEDASAHVLVSVSNPNDghkqqqqlQQQQGQYIPKLTTTKTKEDlKLENKNVGEAALYGINFDDSKYDYTQHLKPIGT 104
                 69***********************************988776654222222222334455566678899***************************** PP

         LTV  91 ..eavfveakkkkkkkekgkkkkkkkledll........lllp.ssvlpsefeekvtlqdqqkvpdeiaGfqpDmDPrLRevleaLedeayvd...... 172
                   +avfv+ak+++ +    k++kkk++edl+        ++ p  sv++  + ++  l +qq+v+++iaGf+pDm+P+LRevleaLedeayv       
  CCD24036.1 105 dpNAVFVPAKSSTVD----KNEKKKDIEDLFvepeykdtKNAPvTSVFQRGVAKPDYLLHQQEVTEDIAGFKPDMNPALREVLEALEDEAYVVnddvev 199
                 *********433333....33356799**999999999844442678888888888889**************************************** PP

         LTV 173 ............deeeeedDiFaelakdgeevdeeefeeeeddewdsdateka..deqpkk....edeeeeeedeenedweadfakfkkeekksread. 252
                             +ee eedD+Fa+l+ +ge++d+eefe+   dewd+d ++++  de+++k    +d++e+ ed +++d++ad+ +f+ke++k +e d 
  CCD24036.1 200 vkskknkkvvepEEELEEDDVFAQLLGSGEVKDDEEFEDG-FDEWDMD-EIDNyeDEHYRKemsqFDNIENLEDLQDIDYQADVIRFQKEKSKYNEYDs 296
                 **********987788899********************9.*******.677667666666788899***********************999995552 PP

         LTV 253 ddeee......seeqssvae........................k......rkkkrkGAltdfseySmtSSalaRteqltlLDdrFekleekYdddeee 315
                 d+  +      s       +                        k      +++++kGA++d+s++Sm+SSa+aRte++t+LDd+F++++ +Y+++e+e
  CCD24036.1 297 DEGLAnesvapS-------DfqdeeeeeendvlgdlpnitaknaKkggkkrKDRRKKGAMSDISGFSMSSSAIARTETMTVLDDQFDNVIGSYENYEDE 388
                 332223334442.......0333444466677777777666655056667799********************************************** PP

         LTV 316 eedeeeleeevdmksvvsersDfesilddflnnYekegkkrkvlkkkeekkelkqladevrkerrser 383
                  e++ee+++++dmk    ersDfes+lddfl+nYe+e+++rk++kk+ee ++lk++adev+k++ s+r
  CCD24036.1 389 IEEDEENYKPFDMKA---ERSDFESMLDDFLDNYELESGGRKLAKKDEEIDRLKKAADEVSKGKLSQR 453
                 ***************...**********************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1721  (0.0959897); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3365.26
//
Query:       CCD24037.1  [L=225]
Description: hypothetical protein NDAI_0C03770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-49  167.8   3.2    3.4e-49  166.4   3.2    1.6  1  RNA_pol_Rbc25  RNA polymerase III subunit Rpc25
      1e-18   67.5   0.0    1.5e-18   66.9   0.0    1.3  1  SHS2_Rpb7-N    SHS2 domain found in N terminus of Rpb7p/Rpc25
     0.0012   19.1   0.8     0.0095   16.3   0.0    2.5  2  S1             S1 RNA binding domain


Domain annotation for each model (and alignments):
>> RNA_pol_Rbc25  RNA polymerase III subunit Rpc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   3.2   5.7e-53   3.4e-49       1     129 []      79     223 ..      79     223 .. 0.91

  Alignments for each domain:
  == domain 1  score: 166.4 bits;  conditional E-value: 5.7e-53
                    -STTSEEEEEEEEEETTCEEEEB.TTBSEEEEECCCCSTTEEEECCCTCEEEEESSSEEEEE-TTSEEEEEEEEEEE-------HHHHHCHHH... CS
  RNA_pol_Rbc25   1 Pfvgevltgkiksstregikvsl.gffddifvpkelLfepsefdeeeqawvweveeeeelyldvgeeirfrveeeifvdvkpkspkeaeleee... 92 
                    Pfvge++tg+i+++t+egikvsl g+f+dif+pk++Lfe++++++e++awvw +ee+++ly+d +e+irfrve+e+fvdvkpkspke+e+ee+   
     CCD24037.1  79 PFVGEIITGWISKCTAEGIKVSLlGMFEDIFIPKKMLFEGCYYSPEDSAWVWPMEEDTKLYFDLNEKIRFRVEQEVFVDVKPKSPKEREMEEQeqq 174
                    9*********************99****************************************************************9999999* PP

                    ............CCTS-SS--SSTTS--S-SCEEEEEB-STTTCECGCC CS
  RNA_pol_Rbc25  93 ............easeeeaeeeeeekekkspyevlgsiqedGlGlvsWw 129
                                  + +e++ee  + ek ++y++lgs+q+dG+GlvsWw
     CCD24037.1 175 lqlqkqeerkanGGDVKEEQEEIVKVEKPPAYALLGSCQTDGMGLVSWW 223
                    ***9998776432233344444456788999****************** PP

>> SHS2_Rpb7-N  SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   2.6e-22   1.5e-18       2      70 .]       9      77 ..       8      77 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 2.6e-22
                 EEEEE-GGGTTSTHHHHHHHHHHHHHTTBEETTTEEEEEEEEEEEECCEEE-TTTSSEEEEEEEEEEEE CS
  SHS2_Rpb7-N  2 dtvrlePsylgstledallerllekyegkvvpslGvivavldiaeysegkvlggsGsvyvrVtfralvF 70
                 d vr++P +++++ +  ++++l++ky +k+vp +G+++ v+di+e++eg+  +g+G++y  V fr l+F
   CCD24037.1  9 DLVRIPPDQFHRDTLSCITHELNNKYANKIVPHIGLCITVYDILEVDEGQLKPGDGASYISVIFRGLIF 77
                 89*****************************************************************99 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.6e-06    0.0095       1      46 [.      78     123 ..      78     168 .. 0.79
   2 ?    0.0   0.6      0.18   1.1e+03      43      62 ..     183     202 ..     173     202 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.6e-06
                 HSTTTCEEEEEEEEEETTEEEEEET.TTEEEEEEGGGSSSSCEESCH CS
          S1   1 kpekgevveGeVtsvtkgGafVelg.ngvegfvpaselsrdarvedp 46 
                 kp++ge+++G ++++t +G+ V l+    ++f+p++ l    ++++p
  CCD24037.1  78 KPFVGEIITGWISKCTAEGIKVSLLgMFEDIFIPKKMLFEG-CYYSP 123
                 79***********************88889****9988766.44443 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.18
                 ESCHHHCEETTEEEEEEEEE CS
          S1  43 vedpdevlkvGdevkvkvlk 62 
                 ++ ++  +k+++e  vkv+k
  CCD24037.1 183 RKANGGDVKEEQEEIVKVEK 202
                 55667789999******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1189  (0.0663171); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1678.79
//
Query:       CCD24038.1  [L=385]
Description: hypothetical protein NDAI_0C03780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-40  138.9   0.0    2.2e-40  138.1   0.0    1.4  1  AAA              ATPase family associated with various cellul
    2.6e-06   27.1   0.0    7.1e-06   25.7   0.0    1.7  1  AAA_lid_3        AAA+ lid domain
      4e-05   23.6   0.0    0.00014   21.8   0.0    2.1  1  AAA_5            AAA domain (dynein-related subfamily)
    4.7e-05   23.7   0.0     0.0022   18.2   0.0    2.4  2  AAA_22           AAA domain
    8.8e-05   22.7   0.0    0.00026   21.1   0.0    1.8  2  AAA_2            AAA domain (Cdc48 subfamily)
    0.00017   22.1   0.1     0.0031   17.9   0.0    2.2  2  AAA_16           AAA ATPase domain
    0.00073   18.8   0.0     0.0013   17.9   0.0    1.4  1  DUF815           Protein of unknown function (DUF815)
     0.0022   17.8   0.0      0.004   16.9   0.0    1.4  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.017   15.4   0.0    1.3  1  AAA_28           AAA domain
      0.018   15.6   0.1      0.059   13.9   0.0    2.0  2  AAA_18           AAA domain
      0.019   14.7   0.1      0.069   12.9   0.1    2.0  2  AAA_24           AAA domain
      0.024   14.8   0.0      0.043   14.0   0.0    1.4  1  AAA_33           AAA domain
      0.025   14.1   0.0      0.064   12.8   0.0    1.6  1  AAA_7            P-loop containing dynein motor region
      0.026   14.9   0.0      0.055   13.9   0.0    1.6  1  RNA_helicase     RNA helicase
      0.038   13.9   0.0      0.069   13.0   0.0    1.4  1  AAA_3            ATPase family associated with various cellul
      0.045   13.1   0.0        0.1   12.0   0.0    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.05   12.8   0.0      0.079   12.1   0.0    1.2  1  TIP49            TIP49 P-loop domain
      0.062   13.2   0.1        4.6    7.1   0.0    2.5  3  ATPase_2         ATPase domain predominantly from Archaea
      0.078   13.0   0.0       0.16   12.0   0.0    1.5  1  AAA_14           AAA domain
      0.093   12.5   0.0       0.15   11.8   0.0    1.3  1  IstB_IS21        IstB-like ATP binding protein
       0.14   11.8   0.0       0.33   10.6   0.0    1.6  2  Sigma54_activat  Sigma-54 interaction domain
       0.17   12.0   0.0       0.32   11.1   0.0    1.5  1  Sigma54_activ_2  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.0   2.7e-43   2.2e-40       1     131 [.     164     296 ..     164     297 .. 0.95

  Alignments for each domain:
  == domain 1  score: 138.1 bits;  conditional E-value: 2.7e-43
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 +llyGppGtGKTl+a+ava+ ++++f+++ gsel++kyvge+++ +relf+ a++k+  +i+f+DEida++++r     + ++e +r++ +L+t+ldg+
  CCD24038.1 164 ILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKK-ACIIFFDEIDAIGGARfddGAGGDNEVQRTMLELITQLDGF 261
                 69*****************************************************98.9***************9965668899999************ PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 + + +++ v+ atnrp++ldpallr gR+drk+e++
  CCD24038.1 262 DPR-GNIKVMFATNRPNTLDPALLRpGRIDRKVEFS 296
                 **7.66***************************987 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   8.7e-09   7.1e-06       7      44 ..     325     362 ..     320     363 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 8.7e-09
   AAA_lid_3   7 LAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 + +++++ +GA+l ++c eA++ A+r  +k  +++df 
  CCD24038.1 325 ISRLCPNSTGAELRSVCTEAGMFAIRARRKVASEKDFL 362
                 7789**************************99999996 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.7e-07   0.00014       2      77 ..     164     232 ..     163     285 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 1.7e-07
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEvera 77 
                 +lL GppGtgK+  a+ +a ++ +++  v +++      l++++   +g +     +l + ar  +++i+++DE++ +
  CCD24038.1 164 ILLYGPPGTGKTLCARAVANRTDATFIRVIGSE------LVQKYVG-EGARMV--RELFEMARtkKACIIFFDEIDAI 232
                 89*********************9999999876......8888883.333333..44444444459*********976 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.8e-06    0.0022       8      40 ..     164     187 ..     159     201 .. 0.85
   2 ?    3.4   0.0       0.1        84      57     126 ..     190     270 ..     185     275 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 2.8e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerp 40 
                 ++++G++GtGKT+++r ++++ d         +
  CCD24038.1 164 ILLYGPPGTGKTLCARAVANRTD---------A 187
                 89******************984.........3 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.1
      AAA_22  57 lrellralglelkaerlsseellealeqalraravielliiDEaqhlr....s..........eealeeLrsllnl.srkgvqli 126
                  r + ++l ++  +   +  ++++ l + +r++++  ++  DE++ +                 ++le + +l  +  r ++++ 
  CCD24038.1 190 IRVIGSELVQKYVG---EGARMVRELFEMARTKKA-CIIFFDEIDAIGgarfDdgaggdnevqRTMLELITQLDGFdPRGNIKVM 270
                 55555555555555...667777777777888888.9*********976654155566667767888877666555666666665 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.4   4.4e+03      38      65 ..      49      76 ..      21      80 .. 0.65
   2 !   21.1   0.0   3.2e-07   0.00026       6     103 ..     164     255 ..     159     268 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.4
                EEGGG-------THHHHHHHHHTTT-HH CS
       AAA_2 38 adaselleeeevehlvsrligappgyvg 65
                ++a +  e+ee +++v +l++ +++ vg
  CCD24038.1 49 SNAENAEEDEEDNKYVINLKQIAKFVVG 76
                4455555666666666666666666665 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 3.2e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqi 102
                 ill gp g+Gkt+ a+a+a+  ++    ++ir+  sel +    e +++v +l      + + ++  i+++DEid i   +        ++Vqr +L +
  CCD24038.1 164 ILLYGPPGTGKTLCARAVANRTDA----TFIRVIGSELVQkyVGEGARMVREL----FEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLEL 254
                 8999******************96....9***999999992222333333333....3455666778**********99633344445579*****998 PP

                 H CS
       AAA_2 103 l 103
                 +
  CCD24038.1 255 I 255
                 7 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.8e-06    0.0031      24      51 ..     161     188 ..     133     208 .. 0.76
   2 ?    1.6   0.0      0.38   3.1e+02     124     146 ..     210     236 ..     205     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.8e-06
      AAA_16  24 pelvllsGesGvGKsslvrellralekd 51 
                 p  +ll+G++G+GK+  +r+++++  ++
  CCD24038.1 161 PKGILLYGPPGTGKTLCARAVANRTDAT 188
                 389******************9754443 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.38
      AAA_16 124 krllallsrderplvlvlDdlq.....w 146
                 ++l++ +++ ++  ++++D+++     +
  CCD24038.1 210 RELFEMART-KKACIIFFDEIDaiggaR 236
                 455677777.777********9555554 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.6e-06    0.0013      51     116 ..     159     229 ..     110     233 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.6e-06
      DUF815  51 lpannvLLwGarGtGKSslvkallneyaeegLrli..evekedlkelpklvellr...erperfilfvDDL 116
                  p + +LL+G  GtGK  + +a+ n++ ++ +r+i  e+ ++ + e  ++v++l    ++++ +i+f D +
  CCD24038.1 159 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIgsELVQKYVGEGARMVRELFemaRTKKACIIFFDEI 229
                 46788******************************88888999999888888765232678899***9975 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.9e-06     0.004      35      94 ..     163     230 ..     153     235 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.9e-06
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvkl.kitsgPvleka.gdlaalltnl......eekdvlfideih 94 
                  +llyGpPG Gkt  a+ +a+  ++++ ++  +  ++k  g+ a ++ +l      ++  ++f dei 
  CCD24038.1 163 GILLYGPPGTGKTLCARAVANRTDATFiRVIGSELVQKYvGEGARMVRELfemartKKACIIFFDEID 230
                 59********************9988515555555555325555554444222222344577888875 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   2.1e-05     0.017       2      40 ..     164     207 ..     163     228 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-05
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv.pEaareileekla 40 
                 i + G+++tGKT  ++a a+r     ++v+  E + +++ e+++
  CCD24038.1 164 ILLYGPPGTGKTLCARAVANRtdatFIRVIgSELVQKYVGEGAR 207
                 7899***************8876656777777777777766553 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       7.6   6.2e+03      50      67 ..      54      70 ..      36      98 .. 0.58
   2 ?   13.9   0.0   7.3e-05     0.059       1      25 [.     164     195 ..     164     259 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7.6
      AAA_18 50 krldedkldklldaleen 67
                 ++de  ++k + +l+++
  CCD24038.1 54 AEEDE-EDNKYVINLKQI 70
                22222.224444444444 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 7.3e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf......g 25 
                 Ill G+pG+GKt  a+++++r+ +       +
  CCD24038.1 164 ILLYGPPGTGKTLCARAVANRTdATfirvigS 195
                 99****************99984335655542 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   8.5e-05     0.069       5      22 ..     164     181 ..     161     232 .. 0.88
   2 ?   -2.0   0.0         3   2.5e+03      31      66 ..     342     375 ..     339     377 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 8.5e-05
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 il+yGp+g+GKT +a+  
  CCD24038.1 164 ILLYGPPGTGKTLCARAV 181
                 89***********99987 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3
      AAA_24  31 tekGlksldadkfpdieswedfldevvelaaelady 66 
                 te+G+ ++ a++  ++ s +dfl++v+++   ++++
  CCD24038.1 342 TEAGMFAIRARR--KVASEKDFLKAVEKVINGYKKF 375
                 799999999999..7789999999999886666655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.3e-05     0.043       2      39 ..     164     203 ..     164     226 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.3e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfg 39 
                 +ll G+pG+GK+  a+ ++++++  ++++   +l ++++g
  CCD24038.1 164 ILLYGPPGTGKTLCARAVANRTDatFIRVIGSELVQKYVG 203
                 6789***************999966666666666666655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.9e-05     0.064      33      70 ..     161     190 ..     150     233 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.9e-05
       AAA_7  33 kkpvllvGptGtGKtviikdllkkldkekylsltinfs 70 
                  k +ll+Gp GtGKt++++ + ++ d         +f 
  CCD24038.1 161 PKGILLYGPPGTGKTLCARAVANRTD--------ATFI 190
                 5789****************999998........2333 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.7e-05     0.055       1      62 [.     164     216 ..     164     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.7e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvk 62 
                   i+lyGp+g+GK+++a+ +          +++d +++r   ++ +++Y g+ + ++ ++ ++ 
    CCD24038.1 164 ILLYGPPGTGKTLCARAV---------ANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA 216
                   789**************3.........45567777788888888888877777777766665 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   8.5e-05     0.069       2      30 ..     164     192 ..     163     225 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.5e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkri 30 
                 +ll g PG++ktl ++a+a+  d++f r+
  CCD24038.1 164 ILLYGPPGTGKTLCARAVANRTDATFIRV 192
                 7999**********************998 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00013       0.1      25      42 ..     164     181 ..     155     188 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00013
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   +ll+GppG+GKt+ a+++
    CCD24038.1 164 ILLYGPPGTGKTLCARAV 181
                   89*************987 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.7e-05     0.079      51      91 ..     162     200 ..     159     217 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevysl 91 
                 +++Ll Gp+gtGkt  a a+++    d  f+ + gse+ + 
  CCD24038.1 162 KGILLYGPPGTGKTLCARAVANRT--DATFIRVIGSELVQK 200
                 89******************9975..689999999998665 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.5   5.3e+03      61      78 ..      47      64 ..      40      82 .. 0.50
   2 ?    7.1   0.0    0.0057       4.6      22      46 ..     163     187 ..     155     201 .. 0.79
   3 ?    3.3   0.0     0.081        66     111     136 ..     213     238 ..     193     261 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.5
    ATPase_2 61 siskldefieeeeekkkl 78
                ++s++++  e+ee++k++
  CCD24038.1 47 NNSNAENAEEDEEDNKYV 64
                555555542222222222 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0057
    ATPase_2  22 iyfiYGpegsGKtaLlkeiienled 46 
                  +++YGp g GKt   + ++++ + 
  CCD24038.1 163 GILLYGPPGTGKTLCARAVANRTDA 187
                 5799*********988888887744 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.081
    ATPase_2 111 ekikkkgkkiiiiiDelqklidlgln 136
                  ++ +++k  ii++De+  ++   ++
  CCD24038.1 213 FEMARTKKACIIFFDEIDAIGGARFD 238
                 457788889********999965555 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00019      0.16       5      76 ..     164     232 ..     161     260 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00019
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT  ++ ++++       ++ +   +  +k   + +++ ++++e+++++k  ++f+DEi  +
  CCD24038.1 164 ILLYGPPGTGKTLCARAVANRTD---ATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAI 232
                 7899**********999996666...5555555444444444444467778888765668888******887 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00019      0.15      47      70 ..     161     184 ..     154     218 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
   IstB_IS21  47 kenivllGpsGvGKshlaialgve 70 
                  ++i+l Gp+G+GK+  a a++ +
  CCD24038.1 161 PKGILLYGPPGTGKTLCARAVANR 184
                 5789**************999876 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00041      0.33      23      54 ..     162     190 ..     151     204 .. 0.79
   2 ?   -3.6   0.0       9.6   7.8e+03      93     103 ..     220     230 ..     205     232 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00041
                      S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EE CS
  Sigma54_activat  23 lsvlitGesGtGKellaraiheaskrkekpfv 54 
                        +l+ G  GtGK+l+ara+ +++   ++ f+
       CCD24038.1 162 KGILLYGPPGTGKTLCARAVANRT---DATFI 190
                      569***************997644...44555 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9.6
                      TTSEEEEETGG CS
  Sigma54_activat  93 dgGtlfLDeig 103
                      +  ++f+Dei 
       CCD24038.1 220 KACIIFFDEID 230
                      45689999996 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00039      0.32      24      47 ..     164     187 ..     160     236 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00039
                      EEEEEETT--HHHHHHCC--TTS- CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsgp 47 
                      ++l G++G+gk+l+Ar+ ++    
       CCD24038.1 164 ILLYGPPGTGKTLCARAVANRTDA 187
                      799**************9886543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 2922.67
//
Query:       CCD24039.1  [L=721]
Description: hypothetical protein NDAI_0C03790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-97  327.1  34.5    1.6e-97  326.8  34.5    1.1  1  Aa_trans        Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
        0.8   10.1   4.5        1.9    8.9   4.5    1.5  1  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.8  34.5  1.8e-101   1.6e-97       1     408 [.     318     716 ..     318     717 .. 0.95

  Alignments for each domain:
  == domain 1  score: 326.8 bits;  conditional E-value: 1.8e-101
    Aa_trans   1 rtssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgv 99 
                 ++ss+++a+l l+k++vG+GvL+LP Af+++G+ ++ ++lll+a++s++++l L+ ++++       + Ygd+g+rl+G  +kl+i  +i+++++G++ 
  CCD24039.1 318 HKSSTFKAILLLLKSFVGTGVLFLPKAFHNGGWAFSSLCLLLCAIISYWCFLTLIVTKDKI----HVDGYGDMGERLYGHPMKLAILWSIVLSQIGFSA 412
                 689********************************************************86....69******************************** PP

    Aa_trans 100 syliligdllpaifesffdt......lllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkasklk 192
                 +y+++++ +l+ ++e+++        + ++ v +i+ + li+ipLsl ++++kLs ++l+a++++l++  +++++ ++ +    +g+++e +   ++++
  CCD24039.1 413 AYTVFTATNLKVFVENVLVRtatmnpTGYNLVWYIILQQLIFIPLSLTRKIAKLSGTALIADLFILLG--LIYVYYYSSYYILSNGIASESM-LWLNKA 508
                 ****************99666778888889999********************************975..7777777777777888888887.778889 PP

    Aa_trans 193 glflaigiivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfplql 291
                 +++l+ig+++F+f+g+ +l++iq+++++p+ f+   k+l+l+++++t+++i++Gl++Y +FG++v++++lln+p+ s+++ +v+ll+ l+++ls+plql
  CCD24039.1 509 DWSLFIGTAIFTFEGIGLLIPIQESMQNPQVFP---KCLSLVMCIVTIIFISCGLICYSAFGEKVETVVLLNFPQDSAFTLMVQLLYSLAILLSTPLQL 604
                 *********************************...9************************************************************** PP

    Aa_trans 292 hplrqvvenllikkeavagasekeapkskllrlvirlllvvityliA.lsvpslakvlslvGatsstplsfilPalfhlkliktekksleklvkkkild 389
                 +p+++++en+ +++     as+k++  +k+ ++++r+++v++t ++A + ++ l+k++slvG+++++pl++i+P+l+h+k++ ++  ++ + ++   ld
  CCD24039.1 605 FPAIKILENWTFPI----HASGKHNSRIKWKKNYFRCIMVIFTAMVAwVGANDLDKFVSLVGSFACIPLIYIYPPLLHFKAFLNDTSKTMRFRL--GLD 697
                 *************8....*******************************************************************987777766..59* PP

    Aa_trans 390 licivlglllvfyglavli 408
                 ++++v+g+++++y+++ +i
  CCD24039.1 698 MLVFVFGIIIMVYTSWETI 716
                 ***************9988 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.5   0.00021       1.9       8      35 ..     271     299 ..     265     320 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00021
  CENP-B_dimeris   8 aged.sesesdeeeeeeeedeededeedd 35 
                     aged sese +eeeee+e +ee+++ee  
      CCD24039.1 271 AGEDlSESEEEEEEEENEVEEEEQEEEAI 299
                     67873555555444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1575  (0.0878465); expected 358.6 (0.02)
Passed bias filter:                      680  (0.0379274); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.42
# Mc/sec: 5188.48
//
Query:       CCD24040.1  [L=675]
Description: hypothetical protein NDAI_0C03800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-56  190.3   0.0      8e-56  189.7   0.0    1.2  1  Pro_dh    Proline dehydrogenase


Domain annotation for each model (and alignments):
>> Pro_dh  Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.7   0.0   4.5e-60     8e-56       3     291 ..     318     655 ..     316     659 .. 0.83

  Alignments for each domain:
  == domain 1  score: 189.7 bits;  conditional E-value: 4.5e-60
                 HHHHHHHHTTE.EEEEEES-SS--SHHHHHHH..HHHHHHHHHHHHHHHCCS-T..........TCC-S.EEE-GGG............TT-SGGGHHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxx..........xxxxx.xxxxxxx............xxxxxxxxxx RF
      Pro_dh   3 ktieklkkrgv.rlsldllgeavlteedadry..leayleaiksiekaskalkv..........leapg.vsvklsa............prletaeeee 75 
                 k  ++l+krg+ +++l+l+ e+ ++++++d    ++++ e+i++i k +   k+            apg +++k+sa            +++  + +++
  CCD24040.1 318 KCGKNLQKRGIsNMMLSLTIENSEGDKNIDTDmiINETIESIHTILKPNL-IKQledpaltnvnDVAPGyIALKPSAlierpnevlmnfNNIGDEYWRA 415
                 56688998999678888888877776666554227788888888844443.2223345565565666779*********99776665443666666666 PP

                 HHHHHHHHHHHHHHHHHHTT-EEE..............E----GGGHH.HHHHHHHHHHHSCCT..TT---EEEEEETTBTTHHHHHHHHHHHHHHTTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh  76 vmeelverlrtlakeakelgvrll..............iDaEeaklqe.ltlelfrklnkepel..kdwevvgntyQaYlkdalevlqkllelAeregf 157
                 + e+l++ + ++ + + +l+ +ll              iDaE+ +lq   +++l+r l+k+ ++  +++ ++++t+Q Yl+ + + ++k++elA+  g+
  CCD24040.1 416 QREKLIDSCCKINQIIFDLNEELLqryperkapffvctIDAEKFELQTkGVYDLQRILMKKFNTveSKLISCVGTWQLYLRHSRKEIDKEVELAKSGGY 514
                 68999999999999999999999999999999999*************988888888887444411334559*************************** PP

                 -EEEEEE--S-HHHHHHHHHHTT-S-SB-SSHHHHHHHHHHHHHHHH.......HTTTTEEEEEE-S-HHHHHHHHHHHHHT......T--GGGEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxx RF
      Pro_dh 158 rlgvkLVrGAYldsErkraqelgyespifdtkeeTDanYdavaelll.......enrdeiypavAsHNaesvakalalaeel....gqekeksevefqq 245
                 rlg+kLVrGAY++sE++r      +s+i++tk +TD+nYd+++  ++       en+   +++vAsHN +s++ a++l+ ++    ++e +ks+v ++q
  CCD24040.1 515 RLGLKLVRGAYMHSEPNR------KSVIHETKFDTDVNYDQIMINIIkdmkiegENSVYGHLMVASHNYKSQMIATQLLFKNkyanDIEYAKSNVVLGQ 607
                 *****************8......699*****************9999999988888899999**************998887888999********** PP

                 ETTSSHHHHHHH..HHTTS-EEEEEEECEHHHHHHHHHHHHHHHH-TT CS
                 xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 246 LlGMadnlsfal..akagynvrkYlPvGpveevlpYLvRRleENtans 291
                 LlGMad+l++ l   + ++n++kY+P+Gp +e+ +YL+RRl+EN+++ 
  CCD24040.1 608 LLGMADDLTYDLihHHGATNIVKYVPWGPPRETKDYLLRRLQENGDAV 655
                 ************95555599*************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1081  (0.0602934); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 5099.84
//
Query:       CCD24041.1  [L=642]
Description: hypothetical protein NDAI_0C03810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.9e-123  410.8   2.7   8.5e-123  410.5   2.7    1.1  1  FAD_binding_2   FAD binding domain
    1.4e-45  154.4   0.2    2.1e-45  153.8   0.2    1.3  1  Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
    1.3e-05   24.5   2.7     0.0042   16.2   2.2    2.3  2  GIDA            Glucose inhibited division protein A
    3.5e-05   23.2   0.1     0.0035   16.6   0.0    2.4  2  Thi4            Thi4 family
    6.4e-05   22.3   0.6    0.00016   21.0   0.1    1.9  3  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
     0.0027   17.0   0.4     0.0065   15.8   0.1    1.8  2  FAD_binding_3   FAD binding domain
      0.004   16.8   2.2      0.014   15.0   2.2    1.7  1  DAO             FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.055   12.2   1.0       0.19   10.4   0.1    2.3  3  HI0933_like     HI0933-like protein


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.5   2.7  3.8e-126  8.5e-123       1     417 []      56     452 ..      56     452 .. 0.99

  Alignments for each domain:
  == domain 1  score: 410.5 bits;  conditional E-value: 3.8e-126
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    D +V+G+G+AGL+AA  +aeaG k+a+++k ++++++t+++qGgi+a+l +++      d++++h++dt+k++d+l+dq+ +++++++ap+ + eL
     CCD24041.1  56 DCVVVGAGGAGLRAAFGLAEAGFKTACISKLFPTRSHTVAAQGGINAAL-GNM---HP-DDWKWHMYDTVKGSDWLGDQDSIHYMTREAPHSIIEL 146
                    89***********************************************.776...35.88*********************************** PP

                    HHTT----BCCTSSB-EEE-TT-SST.......EEEE-.STT-......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTT CS
  FAD_binding_2  97 eelgvpfsrtedgpvdvrelGglsat.......artlhdaadarretlvtghallarlvesarkagvdfqerteadeLivedgrvtGavvenpesg 185
                    e++g+pfsrte+g++++r +Gg++++        rt++ +ad+      tgha+l++l+ +a++++++f+ + +a +L++++g+v+G+++ n+e+g
     CCD24041.1 147 EHYGMPFSRTEEGKIYQRAFGGQTKEygkgeqaYRTCA-VADR------TGHAMLHTLYGQALRHDTHFFIEFFAMDLLTHNGEVVGVIAYNQEDG 235
                    **************************************.****......*********************************************** PP

                    CEEEEEESEEEE-----GG..........GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTBB--THHHHTT-EEE-TT CS
  FAD_binding_2 186 revrirakavvlatgGfgrallkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgiLitealrgeGgilvdkd 281
                    +++r+ra+++vlatgG+gr          a++++t+a+++tGdg+a++ rag +l+d  +e+vqfhP +++    gsg+Lite++rgeGg+lv+++
     CCD24041.1 236 TIHRFRAHKTVLATGGYGR----------AYFSCTSAHTCTGDGNAMVSRAGFPLQD--LEFVQFHPSGIY----GSGCLITEGARGEGGFLVNSE 315
                    *******************..........****************************..************....********************* PP

                    SSBTH.......GGGS-HHHHHHHHH.HHHHTTTS....CCBEEEE-TT.SSHHHHHHHSHHHHHHHHHCCT......S-TTTSEEE.......EE CS
  FAD_binding_2 282 GrrFm.......nelasrdvvsrailekeiaeggs....eanvyldashgldaegleatleaineeaangldkdfgrgidpadrpipgpfyavkvv 366
                    G+rFm       ++la+rdvvsrai+  ei+eg++    +++++l + h l+++ l+++l++i e+a  +++      +d +++pip       + 
     CCD24041.1 316 GERFMeryaptaKDLACRDVVSRAIT-LEIREGRGvgneKDHMFLQLNH-LPPSVLKERLPGISETASIFAG------VDVTKEPIP-------IL 396
                    **************************.**********************.**********************......*********.......** PP

                    EEEEEES-EEEBETTSBE.....STTEEESSBTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 367 paqhytmgGvetdengrv.....ldadgqpipGLYAaGevaaggvhganrlgGnsl 417
                    p++hy+mgG++t  ng++        ++++ipGL A+Ge+a+++vhganrlg+nsl
     CCD24041.1 397 PTVHYNMGGIPTKWNGEAltideETGEDKVIPGLMACGEAACVSVHGANRLGANSL 452
                    ******************99988888999*************************98 PP

>> Succ_DH_flav_C  Fumarate reductase flavoprotein C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.8   0.2   9.4e-49   2.1e-45       1     128 []     507     642 .]     507     642 .] 0.98

  Alignments for each domain:
  == domain 1  score: 153.8 bits;  conditional E-value: 9.4e-49
                     .HHHHHHHHHHSSSSB-HHHHHHHHHHHHHHHHHHTTB--S---SSS-HHHHHHHHHHHHHHHHHHHHHHHHH--S-BTTBEBTTS-SEETTT-S CS
  Succ_DH_flav_C   1 rkeLgkimqkkvgvfRteegLkealkelkelrerlknvkvtdkskvaNqelvealelanllelAeaiaksAlaRkESrGaHaredfperdDenwl 95 
                     r +++k+mqk+v+vfRt+e+L+e+++++ ++ + +++vk++d+s ++N++lve+lel+nll++A+++a+sA aRkESrGaHared+p+rdDenw+
      CCD24041.1 507 RMNMKKTMQKDVSVFRTQESLDEGVSNITAVDKTFDDVKISDRSLIWNSDLVETLELQNLLTCATQTAVSAAARKESRGAHAREDYPDRDDENWM 601
                     578******************************************************************************************** PP

                     EEEEE...TT-SS-EEEEEE--GGG-........-S---SS CS
  Succ_DH_flav_C  96 khtlasldaakeeveleyepveletl........kpkeRsY 128
                     khtl+++++a + vel+y++v  +tl        +p+ RsY
      CCD24041.1 602 KHTLSWQSKAGAPVELKYRNVISTTLdeaecpsvPPTVRSY 642
                     ********99999***********99999999999999999 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.2   1.9e-06    0.0042       1      29 [.      56      88 ..      56     108 .. 0.80
   2 !    6.4   0.0    0.0018       4.1     115     167 ..     211     268 ..     170     285 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.9e-06
                CEEEE-SSHHHHHHHHHHHHTT--EEEE....E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi....t 29
                d++V+G+G AG+ AA+ +a++G+k++ i     
  CCD24041.1 56 DCVVVGAGGAGLRAAFGLAEAGFKTACIsklfP 88
                79***********************98854442 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0018
                 ES-EEEEEECTTEEEEEEETTS-.....EEEECEEEE--TT-BT-EEEETTEEEESSC CS
        GIDA 115 eeeveeliveekkvkgvvtedge.....tikakavviatGtflkgkihigekelsaGr 167
                 e  +++l++++++v gv+  ++e      ++a+++v+atG + ++   + + ++ +G 
  CCD24041.1 211 EFFAMDLLTHNGEVVGVIAYNQEdgtihRFRAHKTVLATGGYGRAYFSCTSAHTCTGD 268
                 455678889999****98765542222257788**********999998887776665 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.6e-06    0.0035      17      49 ..      54      85 ..      44     102 .. 0.89
   2 ?    3.9   0.0     0.012        27     208     233 ..     423     449 ..     407     450 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.6e-06
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailer 49
                e D v+vGaG +GL aa+ la++ ++k+a + +
  CCD24041.1 54 EYDCVVVGAGGAGLRAAFGLAEA-GFKTACISK 85
                78*********************.***998864 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.012
                 ECEEETTEEE-THHH.HHHHT-EB--S CS
        Thi4 208 trevvpnlyvaGmev.aevdganRmGp 233
                   +v+p+l+++G ++   v+ganR+G+
  CCD24041.1 423 EDKVIPGLMACGEAAcVSVHGANRLGA 449
                 3579********7652689******97 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   7.1e-08   0.00016       1      31 [.      55      89 ..      55     119 .. 0.83
   2 ?   -2.9   0.0       1.4   3.1e+03      91     110 ..     233     252 ..     221     266 .. 0.76
   3 ?   -3.9   0.0       2.7   6.1e+03     249     278 ..     405     437 ..     401     446 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 7.1e-08
                 CSEEEE--SHHHHHHHHHHHHHTS-EEEEE....T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....x RF
  Pyr_redox_2  1 kdvvviGgGpAGlaaaltlaqagakvtlve....l 31
                 +d+vv+G+G AGl+aa  la+ag+k+++++     
   CCD24041.1 55 YDCVVVGAGGAGLRAAFGLAEAGFKTACISklfpT 89
                 689**************************544432 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
                  ECTCEEEEEESEEEE---EE CS
                  xxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  91 kegdeekiaydklvlAtGss 110
                  ++g  +++ ++k vlAtG+ 
   CCD24041.1 233 EDGTIHRFRAHKTVLATGGY 252
                  44666778899999999974 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 2.7
                  T-EEEETTEE.E--TTS.BES.STTEEE-GGGC CS
                  xxxxxxxxxx.xxxxxx.xxx.xxxxxxxxxxx RF
  Pyr_redox_2 249 glelderggi.vvdefl.rtn.vpgiyaiGDva 278
                  g++++++g    +de   + + +pg+ a+G  a
   CCD24041.1 405 GIPTKWNGEAlTIDEETgEDKvIPGLMACGEAA 437
                  556655555436666664555699999999877 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.9e-06    0.0065       2      37 ..      55      90 ..      54     102 .. 0.84
   2 ?   -3.4   0.0         2   4.4e+03     131     164 ..     218     251 ..     195     255 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.9e-06
                   EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSC CS
  FAD_binding_3  2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttv 37
                   +d ++VGaG aGl +a  L+eaG ++ ++ k   t 
     CCD24041.1 55 YDCVVVGAGGAGLRAAFGLAEAGFKTACISKLFPTR 90
                   6889*************************9986554 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2
                    CEECCCCCCCEEEECCTTEEEEEEEEEEEE--GT CS
  FAD_binding_3 131 leqdeegvtaevrdketgeeetvrakYlvGaDGg 164
                    l++++e v   ++++e+g++ ++ra  +v a Gg
     CCD24041.1 218 LTHNGEVVGVIAYNQEDGTIHRFRAHKTVLATGG 251
                    4778888888888999999999999877766665 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   2.2   6.2e-06     0.014       1     204 [.      56     253 ..      56     269 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.2e-06
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESSHHHHH CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeelreleeelgididyrrtGllslaadeeele 97 
                 d v++G+G +Gl +A+ La++g  ++ + k  ++ +  + +++g + ++l +  +  +    ++++++  ++l ++  i+   r+  + +++ ++  ++
  CCD24041.1  56 DCVVVGAGGAGLRAAFGLAEAGfkTACISKL-FPTRSHTVAAQGGINAALGNMHPD-DWKWHMYDTVKGSDWLGDQDSIHYMTREAPHSIIELEHYGMP 152
                 78****************************9.888899999999999988655554.554666677888899999999998888888888764332222 PP

                 HHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEE..EECTEEEE..E CS
         DAO  98 aldkllallleagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGveilegtevtgleeedgkvwgve..rttpgend..a 192
                  ++ + +      +  + + ++ ++e   + + ++   + + tg+    ++++ l+ +a ++  +++ +  + +l  ++g v+gv   ++++g+++  +
  CCD24041.1 153 FSRTEEG-----KIYQRAFGGQ-TKEYGKGEQAYRTCAVADRTGH----AMLHTLYGQALRHDTHFFIEFFAMDLLTHNGEVVGVIayNQEDGTIHrfR 241
                 2222111.....1222344443.4444443223444444444455....77777777777777777777777776666777777777655557664234 PP

                 EEEEEE--GGGH CS
         DAO 193 adavVnaaGaws 204
                 a++ V+a+G + 
  CCD24041.1 242 AHKTVLATGGYG 253
                 455999999885 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   8.4e-05      0.19       2      32 ..      56      86 ..      55     116 .. 0.81
   2 ?   -1.7   0.0      0.39   8.8e+02     151     165 ..     238     252 ..     221     261 .. 0.83
   3 ?   -2.9   0.0      0.95   2.1e+03     364     384 ..     416     436 ..     403     443 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.4e-05
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 d +v+G+G AGl aA  +a++g +++ + k 
   CCD24041.1 56 DCVVVGAGGAGLRAAFGLAEAGFKTACISKL 86
                 89********************999988765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.39
                  EEEEESEEEE----S CS
  HI0933_like 151 eeleadklvlAtGGl 165
                  ++++a+k+vlAtGG 
   CCD24041.1 238 HRFRAHKTVLATGGY 252
                  57899********96 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.95
                  GB-TTT-BBTTSTTEEE-GGG CS
  HI0933_like 364 evssktmeskkvpgLffaGEv 384
                   ++++t e k +pgL  +GE 
   CCD24041.1 416 TIDEETGEDKVIPGLMACGEA 436
                  589999999**********94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4280.24
//
Query:       CCD24042.1  [L=470]
Description: hypothetical protein NDAI_0C03820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-10   41.9   1.4    1.6e-10   41.9   1.4    1.9  3  Metallophos  Calcineurin-like phosphoesterase
    2.9e-08   34.2   1.3    5.2e-08   33.4   0.1    2.0  2  DBR1         Lariat debranching enzyme, C-terminal domain
  ------ inclusion threshold ------
      0.034   14.4   0.1       0.13   12.6   0.0    1.9  2  Ta0938       Ta0938


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   1.4   2.6e-14   1.6e-10       1     203 [.       4     236 ..       4     237 .. 0.65
   2 ?   -3.4   0.0       1.9   1.2e+04     156     189 ..     309     341 ..     285     358 .. 0.69
   3 ?   -2.7   0.1       1.1   6.7e+03     129     129 ..     394     394 ..     322     441 .. 0.57

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 2.6e-14
                  EEEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEEST...SSSSS.....HHHHHHHHHHHHHHHH.......TSEEEEEC-TTS...CHHHH CS
  Metallophos   1 lrilvigDlHlalgggqlddllkllddllreekpdlvllaGD...lvdrg.....dlekellellaalvky.......pipvylllGNHe...gfeee 80 
                  lri+v g +H     g l+++ + +++l+++ek+dl++++GD   l  r      +++ ++++l ++   y       p+p +++ GNHe        
   CCD24042.1   4 LRIAVQGCCH-----GELNAIFNEVNRLNNKEKIDLLIILGDfqsLRSRDdfnsiSIPPKYQKLGDFRQYYidsnkraPVPTIFIGGNHEsmkH---L 93 
                  69********.....***************************66655555777786666677776666666889999999**********4431...3 PP

                  HHHHHHHHHHH..HHHHEHHHCEEETSEEEEEETTE.....EEEEEEESECEEE...THHHHHHHHHHHSCHHHHCC.....HHHHHHHHHHTTCSEE CS
  Metallophos  81 llnkygylgif..sepwrsdaevfnnlplaslgsgs.....lkvlllhGgspel...lvsldklgslnleleapepg.....dewlkdlekrekadwv 163
                  +l +yg ++ +    + +s++ +f ++ + sl + +     ++v   + + +++   ++++ +l ++ +++ +p        d++l++          
   CCD24042.1  94 MLLPYGGYAANeiYYLGYSNVIWFKGVRIGSLSGIYkkwdvDRVRPNYSDLERFntwQKNVRNLYHVRKHDLVPLFMirqnvDLMLSH---------- 181
                  3333333333322233334488899999999666656656666666666644445565555555555555555554455555333333.......... PP

                  EEEESSESS.....................CSSSCSCCHHHHHHHHHHTTESEEEEESSSS CS
  Metallophos 164 ivlgHsply.....................rgsgylfgdealedllkkygvdlvisGHtHv 203
                         ++                     +   +  g++    llk+ ++++++s+H H+
   CCD24042.1 182 ---D---WPsgvvyygdmqrllkfkpffknDIQAKELGSPLNWQLLKDLQPKWWLSAHLHC 236
                  ...1...1112233333334444444446666888888888889****************7 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.9
                  HHTTCSEEEEEESSESSCSSSCSCCHHHHHHHHH CS
  Metallophos 156 krekadwvivlgHsplyrgsgylfgdealedllk 189
                  ++e+a ++ +lgH+ ++ g++++   e+ +++l+
   CCD24042.1 309 DEEHASTTNTLGHIQVP-GNENPTTTEEDKEILY 341
                  46666667777777777.6666666666655554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.1
                  H CS
  Metallophos 129 v 129
                  +
   CCD24042.1 394 E 394
                  1 PP

>> DBR1  Lariat debranching enzyme, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.42   2.5e+03      72      72 ..     288     288 ..     233     351 .. 0.55
   2 !   33.4   0.1   8.8e-12   5.2e-08       3      52 ..     354     400 ..     352     453 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.42
        DBR1  72 e 72 
                 e
  CCD24042.1 288 E 288
                 1 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 8.8e-12
        DBR1   3 tTrFLALDKclpkrdFLqvleieseaaeekeeeskkleLeyDpewLaItr 52 
                 +T FL+LDKclp+r++L+++e++ +   ek+ + k+ + ++D e++  ++
  CCD24042.1 354 ETVFLSLDKCLPRRKWLEIIEVDAN---EKHPSYKSDNVYWDCEFIRNLQ 400
                 799*********************9...7778888888888888775555 PP

>> Ta0938  Ta0938
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.2e-05      0.13      42      77 ..      11      46 ..       3      66 .. 0.86
   2 ?   -2.3   0.0      0.88   5.3e+03      26      78 ..     346     401 ..     322     411 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
                SSSS-TTS-THHHHHHHHHHHS---EE---TTT-S- CS
      Ta0938 42 icakefvnllnevkkrtglskideleingnyykgrn 77
                 c  e+  ++nev++  +++kid l+i g++++ r+
  CCD24042.1 11 CCHGELNAIFNEVNRLNNKEKIDLLIILGDFQSLRS 46
                4777888899*********************99876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.88
                 -SS-B-TT--BSSS--SSS..S-TTS-TH.HHHHHHHHHHS---EE---TTT-S-- CS
      Ta0938  26 dyyeevdgeklffccdica..kefvnlln.evkkrtglskideleingnyykgrnv 78 
                 d+ ++   e +f+  d c   ++++++++ +++++    k d++  + ++ +  + 
  CCD24042.1 346 DHNKDRIDETVFLSLDKCLprRKWLEIIEvDANEKHPSYKSDNVYWDCEFIRNLQY 401
                 55555556777777777742256666665345555556666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3459.07
//
Query:       CCD24043.1  [L=301]
Description: hypothetical protein NDAI_0C03830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-24   85.8   0.0    4.3e-24   85.3   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    9.2e-21   74.1   0.0    1.6e-20   73.3   0.0    1.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    1.7e-06   28.3   0.0    0.00019   21.6   0.0    2.3  2  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   7.2e-28   4.3e-24       1     107 [.     161     271 ..     161     273 .. 0.91

  Alignments for each domain:
  == domain 1  score: 85.3 bits;  conditional E-value: 7.2e-28
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEE....ESSCTTTSSSEESSHHHHHHHHHHHHSSTT CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvav....vsreeagweggkgrvqdalleellslkkee 92 
                    ++++G+G +P++++  +++++ kdktkv+++yGn+t  d+l+++e++el++++pg+++v+ +    + + +++ +g  g+++++++++++  ++++
     CCD24043.1 161 LLGAGSGTTPLYQLASHVVKNRKDKTKVNVYYGNKTVGDILLKKEWKELEEQHPGQINVQFFvnevSGEGKDKFNGHVGFITKDYIKNHAAGPDQK 256
                    799****************************************************5555444445377778888999**************99*** PP

                    EEEEEECSHHHHHHH CS
  NAD_binding_1  93 thvyvCGppgMikav 107
                    th+++CGp g++ka 
     CCD24043.1 257 THIFICGPSGFMKAF 271
                    ************986 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   2.7e-24   1.6e-20       2      97 ..      54     149 ..      53     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 73.3 bits;  conditional E-value: 2.7e-24
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC.ETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE-S CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlk.ikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtleikGPlGk 96 
                    ++l ++++  +++++f fklp e+ +lglp+   +  ++   kg +v+R+Ytpis+ ++kG +el +k+yp+Gkm  ++++lk+gd+l+ikGP+ k
     CCD24043.1  54 VTLYKVQKEAHNVKRFIFKLP-EDMTLGLPLCGNILTKFVtEKGYNVVRPYTPISDIHAKGSFELCIKRYPDGKMGTHMHSLKPGDKLSIKGPIKK 148
                    678999999************.8888***98666766666489**************************************************988 PP

                    E CS
  FAD_binding_6  97 f 97 
                    +
     CCD24043.1 149 W 149
                    7 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.1e-08   0.00019       1      80 [.     156     229 ..     156     237 .. 0.89
   2 !    4.2   0.0     0.007        42     126     150 ..     247     270 ..     240     274 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 3.1e-08
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyea 80 
                    ++ + l+++G+G tp++ ++ +++k+ k    +++k++ +  ++  +++ + k+  +elee+++  +i+++ ++ +++ +
     CCD24043.1 156 FKEITLLGAGSGTTPLYQLASHVVKNRK----DKTKVNVYYGNKTVGDILL-KKEWKELEEQHPG-QINVQFFVNEVSGE 229
                    57899**********************9....99***************65.55999*****999.****9999877665 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.007
                    xxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 126 kdiaskhknssvgvfvCGppklvke 150
                    k+  ++ +++++ +f+CGp +++k 
     CCD24043.1 247 KNH-AAGPDQKTHIFICGPSGFMKA 270
                    444.6778999**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2201.96
//
Query:       CCD24044.1  [L=265]
Description: hypothetical protein NDAI_0C03840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-25   87.0   0.0    1.3e-24   86.4   0.0    1.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    5.4e-19   68.9   0.0      8e-19   68.3   0.0    1.2  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    7.5e-05   22.9   0.0    0.00011   22.3   0.0    1.3  1  NAD_binding_6  Ferric reductase NAD binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.0   2.3e-28   1.3e-24       2      99 .]      51     149 ..      50     149 .. 0.95

  Alignments for each domain:
  == domain 1  score: 86.4 bits;  conditional E-value: 2.3e-28
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEEC.ETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE-S CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlk.ikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtleikGPlGk 96 
                    ++l + e+ s+d+ ++ fklp+e+++lglp+   vf+++   kg++v+R+Ytpis+ ++kG++el +k+ypgGkms  +++lk+gdt+++kGP+ k
     CCD24044.1  51 IPLYKIEKESHDVDRLIFKLPKEDAVLGLPLCGAVFAKYVtEKGNNVVRPYTPISDIHAKGFFELCIKKYPGGKMSGRMHSLKPGDTMTFKGPIKK 146
                    578899*************************999999988688***************************************************99 PP

                    EEC CS
  FAD_binding_6  97 feY 99 
                    +++
     CCD24044.1 147 WQW 149
                    875 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   1.3e-22     8e-19       1      87 [.     159     249 ..     159     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 68.3 bits;  conditional E-value: 1.3e-22
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEE....ESSCTTTSSSEESSHHHHHHHHHHH CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvav....vsreeagweggkgrvqdalleells 87 
                    ++a+GtG +P++++  +i++++kd+tkv+++yGn+t  d+l+++e++el++k+p++++v+ +     + e+++ +g  g+++++++e++ +
     CCD24044.1 159 LLAAGTGTTPLYQLASHIAKNPKDTTKVNIFYGNKTPGDILLKKEWKELEEKYPDQINVQCFvdevRDAEKDNFKGHIGFITKEFIEKMHQ 249
                    79*****************************************************666665555547788888899999999999998766 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.9e-08   0.00011       1      82 [.     154     229 ..     154     258 .. 0.88

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.9e-08
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyeaed 82 
                    +e + l+a+G+G tp++ ++ ++ k+ k    +t+k+++   ++  +++ + k+  +elee+ +  +i++++++ ++++ae+
     CCD24044.1 154 FEEITLLAAGTGTTPLYQLASHIAKNPK----DTTKVNIFYGNKTPGDILL-KKEWKELEEKYPD-QINVQCFVDEVRDAEK 229
                    68899**********************9....*****************65.55999*******9.********99988854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1937.73
//
Query:       CCD24045.1  [L=345]
Description: hypothetical protein NDAI_0C03850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-71  240.9   0.0    7.4e-71  238.5   0.0    1.8  2  Carb_kinase    Carbohydrate kinase
    4.2e-06   26.3   0.0    7.7e-06   25.5   0.0    1.4  1  Phos_pyr_kin   Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
       0.11   11.9   0.0       0.16   11.3   0.0    1.3  1  HK             Hydroxyethylthiazole kinase family
        6.7    6.5   6.3        0.7    9.7   1.0    2.0  2  Lantibiotic_a  Lantibiotic alpha


Domain annotation for each model (and alignments):
>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.5   0.0   1.7e-74   7.4e-71       1     243 [.      35     311 ..      35     312 .. 0.90
   2 ?    2.4   0.0     0.021        93     213     240 ..     306     333 ..     294     336 .. 0.89

  Alignments for each domain:
  == domain 1  score: 238.5 bits;  conditional E-value: 1.7e-74
                  EEEEE-BTTCHHHHHHHHHHHHCTT-SEEEEEESSTTTCCCCTTTTTCEECCTT......HTTTS....--SSS-SEEEE-TT-SSSHCHHH....HC CS
  Carb_kinase   1 vlvigGsedytGAallaalaalrlgaglvsvateseaiavlksylpevivhpll......edeqa.kileklerldavviGpGLgrdekikk....ll 87 
                  v++igG+edytGA++++a+a++ +g++l++v++e++a++v+ksy+p+++vhp+l      ++e++ ki  +l+r++++viGpGLgrd+ +      ++
   CCD24045.1  35 VCIIGGCEDYTGAPYFSANATALMGCDLTHVICEKDAATVIKSYTPNLMVHPYLrtskdkHEEEFeKIEMLLKRIHVIVIGPGLGRDKGMLDsikkII 132
                  79*******************************************************99866777899*******************988766666** PP

                  HHHCCCCS-...EEEEGGGGGSGGGG........TTTTSSEEEE--HHHHHHHCTTTCH.........HCCSHHHHHHHHHHHHTTEEEEESTTSEEE CS
  Carb_kinase  88 eevlekdep...lviDAdgLnllaqkne.....lserkaeviLTPhkkEfkrLlkaivk.........keddrlelarelaqklnavvllkgekdviv 168
                  + vlek+e+   +viDAdgL+l++q++e     ++ +++++iLTP+++EfkrL++++++           ++   +++++a++ln++v+ kg +d i+
   CCD24045.1 133 KLVLEKHEGmipIVIDADGLFLISQDEEvremlKKFPMGRIILTPNVVEFKRLSESVGHdpeekdeekDISSNEVTGATIAKRLNCIVVQKGREDRIF 230
                  ********99999*************99999988999************************99987654455666899******************** PP

                  ECTTE..EEEE----GGG-STTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHH..HHHHCCCT-T..S-HCHHHHHHHC CS
  Carb_kinase 169 spege..vlinstgssalakGGsGDvLaGligalLaqneasyeaaiaaawlhgaa..sdeaaekkgv..gmlatelskiip 243
                  sp+ +  vl+n+ ++s +++GG+GD+L+G i+++La++++++++++++ + +g+   +++  + +++  g+l++++ ++++
   CCD24045.1 231 SPQSDsfVLKNDREGSCKRVGGQGDTLTGTIACMLAFSRSMHDFKLCEDENNGKNkkGHDELKLEWIdfGVLSCYAGCTVT 311
                  **6664488999************************************999886422666666667677888888877765 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.021
                  HHHHHHHHHHHHHCCCT-TS-HCHHHHH CS
  Carb_kinase 213 aaawlhgaasdeaaekkgvgmlatelsk 240
                  a++ + +++s++a+++kg++m++ ++ +
   CCD24045.1 306 AGCTVTRECSRLAFKEKGRAMQTSDINE 333
                  789999*****************99976 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.7e-09   7.7e-06      67     218 ..     123     272 ..      99     274 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.7e-09
                   -S--S.HHHHHHHHHHHHHTTS.SEEEE---SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT---SSHHHHHHHHHHHHH.TT-SEEE CS
  Phos_pyr_kin  67 Gmlas.aeiievvaeklkkykv.pvVlDPVmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlgekikteedmkeaakkllk.lgakaVl 160
                   Gml s ++ii++v ek  ++++ p+V+D    a++   + ++e v+ + +++     ++tPN+ E ++L++ ++ +  + k+  k++++   + a +
    CCD24045.1 123 GMLDSiKKIIKLVLEK--HEGMiPIVID----ADGLFLISQDEEVREMLKKFPMGRIILTPNVVEFKRLSE-SVGHDPEEKDEEKDISSnEVTGATI 212
                   7774423455555444..4555588888....556667777888888888777777789***********9.5555555555556665536666777 PP

                   EEEGGS-SSSEEEEEEEE..TSSEEEEEEEE----S--BTHHHHHHHHHHHHHHCTSSHH CS
  Phos_pyr_kin 161 ikGghlegeeavvtdvly..dgeeveeleaerietknthGtGCtlssaiaaelakgesle 218
                    k  ++   ++  +d ++  ++++++  + +  + k+  G G+tl   ia+ la  +s++
    CCD24045.1 213 AKRLNCIVVQKGREDRIFspQSDSFVLKNDREGSCKRVGGQGDTLTGTIACMLAFSRSMH 272
                   777766444444468888755555666666667889999***************988876 PP

>> HK  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.6e-05      0.16     143     202 ..     208     269 ..     121     277 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHTSEEEEESSSEEEEESSE.EEEEE-S-G.GGGGSTTHHHHHHHHHHHHHTTBS CS
          HK 143 avqkvAqklrvvvvvtGevDvvsdgkk.vyklknGte.llgkitasGCllgsvvaaflavkk 202
                 +  ++A++l+++vv  G+ D +   ++  ++lkn  e    ++ + G +l+ ++a +la ++
  CCD24045.1 208 TGATIAKRLNCIVVQKGREDRIFSPQSdSFVLKNDREgSCKRVGGQGDTLTGTIACMLAFSR 269
                 33579***************997776659999999884678999*************99875 PP

>> Lantibiotic_a  Lantibiotic alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.4      0.78   3.5e+03       9      25 ..     248     264 ..     246     265 .. 0.75
   2 ?    9.7   1.0   0.00016       0.7      16      24 ..     306     314 ..     305     315 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.78
  Lantibiotic_a   9 krLGNkGylCTvTkECM 25 
                    kr G +G   T T  CM
     CCD24045.1 248 KRVGGQGDTLTGTIACM 264
                    56777777778888898 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00016
  Lantibiotic_a  16 ylCTvTkEC 24 
                    ++CTvT EC
     CCD24045.1 306 AGCTVTREC 314
                    79******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2445.36
//
Query:       CCD24046.1  [L=262]
Description: hypothetical protein NDAI_0C03860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-39  135.1   0.1    3.1e-31  108.6   0.1    2.0  2  His_Phos_1    Histidine phosphatase superfamily (branch 1)
  ------ inclusion threshold ------
      0.065   13.2   0.0       0.18   11.8   0.0    1.7  1  Tnp_22_dsRBD  L1 transposable element dsRBD-like domain


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.1   3.5e-35   3.1e-31       1     124 [.      18     146 ..      18     150 .. 0.95
   2 !   25.9   0.0   7.7e-10   6.9e-06      97     175 ..     144     224 ..     139     235 .. 0.81

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 3.5e-35
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT..S---EEEE-SSHHHHHHHHHHHHCTT...--EEE-GGGS----GGGTT-B.HHHH CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag..epidaiysSplkRarqTaeliaealg...lpveldegLrEidfGdweglttaeia 94 
                 l+LvRHG++ewn+++ + g+ dv L++ G+++A++++e l++  +++d++y+S l+Ra+qTa++++ + +   +pv+   +L+E+++G+++g+ +ae  
  CCD24046.1  18 LVLVRHGQSEWNEKNLFTGWVDVRLSAVGEKEAARAGELLKEhnVHPDVLYTSKLSRAIQTANIALSKSDrlwIPVKRSWRLNERHYGALQGKDKAETL 116
                 79****************************************66777777*****************999***************************** PP

                 HH..HSHHHHHHHHH-GGG-BS-BHHHHHH CS
  His_Phos_1  95 eeypeeleawlrdpadvrppggEsledvaa 124
                 e+y ee  +++r++ dv+pp+ E   ++ +
  CCD24046.1 117 EKYGEEKFTTWRRSFDVPPPPIEDDSEFSQ 146
                 *********************999888876 PP

  == domain 2  score: 25.9 bits;  conditional E-value: 7.7e-10
                 ..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHT..TTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT- CS
  His_Phos_1  97 ypeeleawlrdpadvrppggEsledvaaRvaaaleelaarh..egetvlvVsHggvirallarllglpleelrrleldnas 175
                 + ++ +a+ ++ + +  p+ Esl+ v +R+ + +++++a+   +g+tv++ +Hg  +ral+++l g++ +++ +l++++  
  CCD24046.1 144 FSQKGDARYHNVDPNVLPQTESLALVIDRLLPYWQDVIAKDllAGQTVMIAAHGNSLRALVKHLEGISDADIAKLNIPTGI 224
                 5555566666666678899****************999886447899************************9999997765 PP

>> Tnp_22_dsRBD  L1 transposable element dsRBD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.1e-05      0.18      16      36 ..      56      76 ..      49      81 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.1e-05
                  HHHHTT---EEETTTEEEEES CS
  Tnp_22_dsRBD 16 iLkekkfqPrllYPakLsiii 36
                  +Lke+++ P +lY +kLs  i
    CCD24046.1 56 LLKEHNVHPDVLYTSKLSRAI 76
                  79***************9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1933.25
//
Query:       CCD24047.1  [L=253]
Description: hypothetical protein NDAI_0C03870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-53  180.0   1.1    3.6e-53  179.7   1.1    1.1  1  SRPRB        Signal recognition particle receptor beta subuni
      3e-09   36.6   0.0    4.1e-09   36.1   0.0    1.1  1  Arf          ADP-ribosylation factor family
    3.1e-06   27.3   0.1      6e-06   26.3   0.1    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0004   19.9   0.1    0.00096   18.7   0.1    1.8  1  FeoB_N       Ferrous iron transport protein B
      0.002   18.1   0.4      0.042   13.8   0.0    2.2  2  ATPase_2     ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
      0.011   15.4   0.0      0.024   14.4   0.0    1.5  1  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
      0.012   15.4   0.1      0.016   15.0   0.1    1.5  1  AAA_24       AAA domain
      0.012   15.9   0.1      0.088   13.1   0.1    2.0  1  AAA_22       AAA domain
      0.015   15.1   0.3        0.2   11.4   0.1    2.1  2  ATP_bind_1   Conserved hypothetical ATP binding protein
      0.017   15.1   0.3         31    4.6   0.0    3.5  3  Vps4_C       Vps4 C terminal oligomerisation domain
      0.023   14.5   1.3      0.048   13.5   0.4    2.0  2  AAA_21       AAA domain, putative AbiEii toxin, Type IV TA sy
      0.063   13.7   0.8       0.36   11.3   0.5    2.3  1  DUF5099      Domain of unknown function (DUF5099)
      0.066   13.7   3.4      0.096   13.2   0.6    2.0  2  AAA_23       AAA domain
       0.13   12.2   0.9        1.8    8.4   0.1    2.2  2  RsgA_GTPase  RsgA GTPase
       0.41   10.3   1.5       0.73    9.5   1.5    1.4  1  DUF3149      Protein of unknown function (DUF3149)


Domain annotation for each model (and alignments):
>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.7   1.1     3e-56   3.6e-53       2     181 .]      45     230 ..      44     230 .. 0.90

  Alignments for each domain:
  == domain 1  score: 179.7 bits;  conditional E-value: 3e-56
                 ---EEEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHH CS
       SRPRB   2 skpavllvGlsdsGKTslftrLttdsvkktvtSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAElly 100
                 +kp+++++G+s+sGKTslft+L++++ ++tvtS++ s  +++    ++++++i+fPGh klr+kl++ lk++ ++ g+++vvDSt+dpke++++AE+l 
  CCD24047.1  45 KKPIFVIAGPSNSGKTSLFTLLSNNKQRPTVTSLDVSKLENL----DNRINVIEFPGHFKLRYKLIDFLKKNPKIAGVIYVVDSTVDPKELTKTAEFLL 139
                 799*******************************99988888....999************************************************** PP

                 HHHHHHHHHTT.---EEEEEE-TTSTT---HHHHHHHHHHHHHHHHHCHHHHHH--........----T.....T--------GGGSSS-E CS
       SRPRB 101 eilliteklkd.avdiliACnKqelflakspklikdaLEkElnkiierrskalkel........deeedks.avlakkgkdFkfdqleakV 181
                 ++llite++k+ +++iliACnK+e+f +++p  ik+aLE E+ kii+r++k++  +        de+++ +  +  +++ +F f+ le++V
  CCD24047.1 140 DVLLITESKKNmEPNILIACNKSESFSSRPPLRIKEALETEISKIIVRKKKSIGDVniitqdgtDESNELEmLKELSSSGKFSFNLLEGSV 230
                 *******99884699**************************************99999999887333332202223566789999999876 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   3.4e-12   4.1e-09      12     167 ..      44     206 ..      35     215 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 3.4e-12
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSS.EEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCT...TESEEEEEEETT.-CTTHHHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvttvPTig.fnveeleiknlkftvwDvGGqeklRplWknYfe...ktdavifvvDsa.dreRleeakeeLk 105
                 +k+   ++ G  n+GKt + + l+++++    PT+   +v +le  + +++v +  G+ klR    ++++   k+ +vi+vvDs+ d + l+++ e L 
  CCD24047.1  44 NKKPIFVIAGPSNSGKTSLFTLLSNNKQ---RPTVTsLDVSKLENLDNRINVIEFPGHFKLRYKLIDFLKknpKIAGVIYVVDSTvDPKELTKTAEFLL 139
                 56666789999********999998876...566641689**********************99888876222699*******9637788888777665 PP

                 H.HC..TSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGG..SSSSSSEEEEEEBTTTTBTHHHH CS
         Arf 106 a.ll..eeeelkevallvlaNKqDlpealseeelrellglee..lkgkrkleiqkcsavkgeglkeg 167
                   ll  e++++ e  +l+ +NK +  ++     ++e+l+ e   +  ++k +i  +++++++g +e+
  CCD24047.1 140 DvLLitESKKNMEPNILIACNKSESFSSRPPLRIKEALETEIskIIVRKKKSIGDVNIITQDGTDES 206
                 414411344455789**********************986543366789999999999999999886 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1     5e-09     6e-06       3     104 ..      50     150 ..      48     161 .. 0.65

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 5e-09
                 EEEESTTSSHHHHHHHHHTSTEEESSSTTSS.SSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT...TTCSHHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkpgtT.rdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas...eeklkpldeel 97 
                 +i+G +N+GK++L+  l+++k    ++p +T +d+ +   +  +++i+++  pG ++    + +l + ++++ +   +++vvd++   + +l++  e l
  CCD24047.1  50 VIAGPSNSGKTSLFTLLSNNK----QRPTVTsLDVSKL--ENLDNRINVIEFPGHFK---LRYKLIDFLKKNPKIAGVIYVVDSTvdpK-ELTKTAEFL 138
                 79****************984....4555551455333..323579********776...555788777778889********766633.466666666 PP

                 HHHHHH.....T CS
    MMR_HSR1  98 eellee.....a 104
                  ++l       +
  CCD24047.1 139 LDVLLIteskkN 150
                 665422332332 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1     8e-07   0.00096       4      96 ..      50     132 ..      48     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8e-07
                 EEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH.CTSSSEEEEEEEGGGHHHHHH CS
      FeoB_N   4 alvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardfll.eeepdvvvnvvdatnlernLy 96 
                 +++G  n+Gkt+lf  l++ kq+    p vt      kl+  +++++++ +PG ++l    ++      fl  + ++  v+ vvd+t   ++L+
  CCD24047.1  50 VIAGPSNSGKTSLFTLLSNNKQR----PTVTS-LDVSKLENLDNRINVIEFPGHFKLRYKLID------FLKkNPKIAGVIYVVDSTVDPKELT 132
                 789******************98....66663.4566777789************99765443......3331234455566666554444443 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.5e-05     0.042      17      45 ..      43      71 ..      38      95 .. 0.81
   2 ?    2.3   0.1      0.11   1.4e+02     112     172 ..     108     168 ..      98     189 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.5e-05
    ATPase_2 17 repneiyfiYGpegsGKtaLlkeiienle 45
                +++++i +i Gp +sGKt+L+  + +n++
  CCD24047.1 43 SNKKPIFVIAGPSNSGKTSLFTLLSNNKQ 71
                56889***************998888875 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.11
    ATPase_2 112 kikkkgkk..iiiiiDelqklidlglngaellvkeLlnliesltkekhlcvviclsSeglfie 172
                  +kk+ k   +i ++D     ++l+ + ae+l++  l + es+ + +  +++ c  Se+ + +
  CCD24047.1 108 FLKKNPKIagVIYVVDSTVDPKELT-KTAEFLLD-VLLITESKKNMEPNILIACNKSESFSSR 168
                 5555555466899999999999555.33555555.55588999999999999**999998766 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0     2e-05     0.024       5      78 ..      50     130 ..      45     142 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-05
   PduV-EutP   5 lliGkvgsGKttLtqalkg.......eelkYkktqaiefsdeviDtPGeylenrklysalivtsaeadvialvqdateees 78 
                 ++ G+++sGKt+L   l++        +l  +k   ++   +vi+ PG +    kl   l+     a vi +v +++++++
  CCD24047.1  50 VIAGPSNSGKTSLFTLLSNnkqrptvTSLDVSKLENLDNRINVIEFPGHFKLRYKLIDFLKKNPKIAGVIYVVDSTVDPKE 130
                 3559*************99888888889999**********************99******99999999999999887765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   1.3e-05     0.016       3      60 ..      47     124 ..      45     247 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
      AAA_24   3 lkiliyGpsgiGKTtlakel...gpkplfidtekGlksldadkfpdie.........swedfldevvel........a 60 
                   ++i Gps +GKT+l + l   +++p +  ++ +  +  +++++ ie         +++dfl++  ++        +
  CCD24047.1  47 PIFVIAGPSNSGKTSLFTLLsnnKQRPTVTSLDVSKLENLDNRINVIEfpghfklryKLIDFLKKNPKIagviyvvdS 124
                 5689***********9999999999****9999998888888888888888556555555555554444444444440 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   7.3e-05     0.088       4     112 ..      45     215 ..      42     226 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.3e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee......................................erpevv...fvtlpsstsskdllrell 61 
                 ++ i v+ G+s +GKT l   l +++ +++  +                                       +++ +v   +v+++++t+ +++l ++l
  CCD24047.1  45 KKPIFVIAGPSNSGKTSLFTLLSNNK-QRPTVTSldvsklenldnrinviefpghfklryklidflkknpkiAGVIYVvdsTVDPKELTKTAEFLLDVL 142
                 57799**************9999997.556666678888888888888888888888888888888755544333333777788888888888888888 PP

      AAA_22  62 ralglelka.................erlsseell.ealeqalrarav....ielliiDEaqhlrseealeeL 112
                  +++++++                  ++l+ +e l + + + + ++++    + ++  D  +  ++ e+l+eL
  CCD24047.1 143 LITESKKNMepniliacnksesfssrPPLRIKEALeTEISKIIVRKKKsigdVNIITQDGTDESNELEMLKEL 215
                 8888777777777777777777766666666665556666666666666655555555555554345555555 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.13   1.6e+02       1      18 [.      51      68 ..      51      87 .. 0.81
   2 ?   11.4   0.1   0.00017       0.2     107     194 ..      98     190 ..      76     226 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.13
  ATP_bind_1  1 vvGpaGsGKttfvgalse 18
                ++Gp  sGKt++   ls+
  CCD24047.1 51 IAGPSNSGKTSLFTLLSN 68
                68*********9988876 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00017
  ATP_bind_1 107 hseslakiveeLes.efalvvvyLvDsqr....ltdptkfisgllsalsamlrlelPhvvvlnkfDllkeklekeleffedvealslllekee 194
                 h +   k+++ L++     +v+y+vDs++    lt++++f+  +l+      ++e   ++++nk + ++++   +++   ++e  + +  k++
  CCD24047.1  98 HFKLRYKLIDFLKKnPKIAGVIYVVDSTVdpkeLTKTAEFLLDVLLITESKKNMEPNILIACNKSESFSSRPPLRIKEALETEISKIIVRKKK 190
                 445555677888887677789999887653222777*********************************998888988888887777766665 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.026        31      39      55 ..      69      85 ..      65      88 .. 0.88
   2 ?    2.4   0.0      0.14   1.6e+02      41      57 ..     122     138 ..     115     141 .. 0.85
   3 ?    4.0   0.0     0.043        51      41      59 ..     233     251 ..     218     252 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.026
      Vps4_C 39 kkarptVskeDLekhee 55
                +k+rptV++ D+ k+e+
  CCD24047.1 69 NKQRPTVTSLDVSKLEN 85
                589*********99985 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.14
      Vps4_C  41 arptVskeDLekheeFT 57 
                 + +tV +++L+k  eF 
  CCD24047.1 122 VDSTVDPKELTKTAEFL 138
                 568************95 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.043
      Vps4_C  41 arptVskeDLekheeFTke 59 
                    +V k+D+ k +e+ +e
  CCD24047.1 233 ISGSVLKKDIVKWQEWIEE 251
                 566999**********887 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.4   4.1e-05     0.048       1      58 [.      48      99 ..      48     140 .. 0.76
   2 ?   -1.3   0.0       1.3   1.5e+03      52      88 ..     213     250 ..     208     252 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.1e-05
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipf 58
                + v+ Gp +sGK++L+ +l       ++ ++ t ++ + +++   +++++ +++ + f
  CCD24047.1 48 IFVIAGPSNSGKTSLFTLL------SNNKQRPTVTSLDVSKLENLDNRINVIEFPGHF 99
                689****************......555555555555666666666666655555544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.3
      AAA_21  52 ydpeipfefeieeflsqgvryryglrlersqv..eekls 88 
                 ++ +++++f+++ +l+ +v+   g  l++++v  +e++ 
  CCD24047.1 213 KELSSSGKFSFN-LLEGSVDAISGSVLKKDIVkwQEWIE 250
                 566788999999.99999999999999999998887775 PP

>> DUF5099  Domain of unknown function (DUF5099)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5    0.0003      0.36      50      80 ..     144     176 ..      59     191 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
     DUF5099  50 f..enksvlpdlvilcndklvFklksplllyka 80 
                 +  ++k++ p+++i cn++  F  + pl + +a
  CCD24047.1 144 IteSKKNMEPNILIACNKSESFSSRPPLRIKEA 176
                 234899**********************99876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.6     8e-05     0.096      18      37 ..      45      64 ..      33      68 .. 0.88
   2 ?    1.5   0.1      0.31   3.7e+02     115     142 ..     175     205 ..      71     250 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8e-05
      AAA_23 18 skgltlItGpNGaGKTTild 37
                +k++++I Gp  +GKT+++ 
  CCD24047.1 45 KKPIFVIAGPSNSGKTSLFT 64
                68****************96 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.31
      AAA_23 115 deleqfisellgskkiil...nlilflgqer 142
                 ++le +is+++ +kk+++   n+i   g ++
  CCD24047.1 175 EALETEISKIIVRKKKSIgdvNIITQDGTDE 205
                 4455555555555555331112222222222 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0015       1.8      98     126 ..      45      73 ..      19      87 .. 0.81
   2 ?    2.4   0.1      0.11   1.3e+02      29      63 ..     133     169 ..     111     220 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0015
                  TTSEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpelelk 126
                  k+ + v++G+S  GK++L   l ++++  
   CCD24047.1  45 KKPIFVIAGPSNSGKTSLFTLLSNNKQRP 73 
                  456899*************9999986544 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.11
                  T--HHHHHHHHHHHHHTT-EEEEEE..E-GGG--HHH CS
  RsgA_GTPase  29 elslnlldrfLvlaeekgiepvivl..nKiDlleeee 63 
                  ++ + lld +L++  +k++ep i++  nK +  +++ 
   CCD24047.1 133 KTAEFLLDVLLITESKKNMEPNILIacNKSESFSSRP 169
                  4567788999999999999776654338888887777 PP

>> DUF3149  Protein of unknown function (DUF3149)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.5   0.00061      0.73       1      23 [.       3      23 ..       3      29 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00061
     DUF3149  1 wkdLFssdvGLlSliVIvftigm 23
                ++dL  ++ +L Sl+VI++t ++
  CCD24047.1  3 MLDL--NNAILVSLLVIALTTLL 23
                5789..9************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 1936.15
//
Query:       CCD24048.1  [L=607]
Description: hypothetical protein NDAI_0C03880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-30  104.5   0.2    1.7e-09   37.3   0.0    4.3  4  Rsm22            Mitochondrial small ribosomal subunit Rsm22
    0.00017   21.5   0.0    0.00048   20.0   0.0    1.8  1  Methyltransf_23  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0     5e-11   4.5e-07       4      73 ..      86     159 ..      83     181 .. 0.82
   2 !   21.5   0.1   1.3e-08   0.00012      70     160 ..     197     303 ..     170     317 .. 0.75
   3 !   11.0   0.0     2e-05      0.18     162     187 ..     336     362 ..     319     397 .. 0.70
   4 !   37.3   0.0   1.9e-13   1.7e-09     203     274 ..     421     521 ..     409     522 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 5e-11
       Rsm22   4 siaYalarlpatyavlrrvLdelaerv....pdflPkslldvgegpgtalwaaselweeleevlvidaseelle 73 
                 + a ++  + ++y +++++L el++r     ++++P+ +ldvg gp+t+++a +++++++e+  +++ +  + +
  CCD24048.1  86 VDAHIASIFLQNYGAIYQTLMELKKRAstkgEEWVPNRVLDVGFGPATGIIALNDIFQNMEKKPTVKDAVIMGS 159
                 66788889999************9986444489*************************9998877776665555 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.3e-08
       Rsm22  70 elleiskelaadapelkeaalrrsvirealeleea...........dLviisyvLleledesreklvknlWakask.....ilvivEeGtpaGfrrvle 152
                 ++l+  +e++ d++e+ e++l  +v++++++++++           dL+i+++ Ll  e +  +++ +nl + ++       +vi+E G p Gf+  ++
  CCD24048.1 197 DILKADNEIMTDTEEVYEEELVGEVMTKKIKIKTNlrddlplnkeyDLIILTHQLLHDESKFHTQVDENLTRYLKLlapggNIVIIERGNPLGFEITVK 295
                 345555667777777777778888888888888778888999999**********887777677777777655543444679***************** PP

       Rsm22 153 aRealkaa 160
                 aR+ ++  
  CCD24048.1 296 ARQLMIRP 303
                 ***99754 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 2e-05
       Rsm22 162 fhivAPCPHeaaCPlvate.dwChFsq 187
                  +i+AP PH+ aCPl++++ ++  F++
  CCD24048.1 336 LKIIAPSPHHRACPLQTDNpNYYSFPE 362
                 589************999665555543 PP

  == domain 4  score: 37.3 bits;  conditional E-value: 1.9e-13
       Rsm22 203 vpvedekfsyvakerqprasa............................aaRvvrptkvrskkvlidlCsedetlqrlvvtKrkG.eaykaArkaeWGD 272
                 +++e   +sy+ +er  + +                             ++R++ ++++r+++v++d+C   ++l++ ++ K+   e y  Arka  GD
  CCD24048.1 421 KNYEIINYSYLIAERSLNDPEtlahikklreeqpfnfqigslgdgspdtWPRIISQPIKRKGHVILDVCGPSGELEKWTIPKSFSkEIYYDARKAMKGD 519
                 6788888888777776666656778888888999999999999999999*********************************655499*********** PP

       Rsm22 273 rl 274
                 ++
  CCD24048.1 520 LW 521
                 99 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   5.3e-08   0.00048      21     143 ..     119     311 ..      62     325 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 5.3e-08
  Methyltransf_23  21 raggrvLdiGcGtGil.......levlrengf.svtgvDlspeaveiae............................................. 61 
                        ++rvLd+G G  +         + ++++++ + +++  s  ++ +a+                                             
       CCD24048.1 119 WVPNRVLDVGFGPATGiialndiFQNMEKKPTvKDAVIMGSLDMQRKAKiilsrqideivdptslnaseesaevseridilkadneimtdteev 212
                      3456999988775543224555533334433332222223334444444555566665555555555555566666666775555555565556 PP

  Methyltransf_23  62 ........kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpd.....ppellrqiatllkpgGylllseplaslk.edrllldwlylvpag. 140
                                 k +k +++  ++ + ++ +dlI+l++ l h ++     + e+l++  +ll+pgG++++ e +++l  e       l+++p++ 
       CCD24048.1 213 yeeelvgeVMTKKIKIKTNLRDDLPLNKEYDLIILTHQLLHDESkfhtqVDENLTRYLKLLAPGGNIVIIERGNPLGfEITVKARQLMIRPENy 306
                      6565555533333333333346667888*************9964423355********************99998433333333455555554 PP

  Methyltransf_23 141 ..rhi 143
                        +h+
       CCD24048.1 307 pnEHG 311
                      44554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 4802.56
//
Query:       CCD24049.1  [L=82]
Description: hypothetical protein NDAI_0C03890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-30  103.7   2.8      4e-30  103.3   2.8    1.2  1  Ribosomal_S27e  Ribosomal protein S27
     0.0076   16.4   0.8     0.0093   16.2   0.8    1.2  1  IBR             IBR domain, a half RING-finger domain
  ------ inclusion threshold ------
      0.024   14.2   4.2      0.035   13.6   4.2    1.2  1  TF_Zn_Ribbon    TFIIB zinc-binding
        3.2    7.9   6.4         19    5.4   0.2    2.3  2  zf-ACC          Acetyl-coA carboxylase zinc finger domain


Domain annotation for each model (and alignments):
>> Ribosomal_S27e  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   2.8   8.9e-34     4e-30       1      55 []      28      82 .]      28      82 .] 0.99

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 8.9e-34
                    -S--EEEEE-TTTS-EEEEESS-SS-EEESSSTCEEEEECSSSEEESSCEEEEES CS
  Ribosomal_S27e  1 prskFldvkCpdCenetvvFshaatvvkCisCgkvLvePtGGkaklkaqilerlk 55
                    prs+FldvkCp+C n+t+vFsha+t+v+C+sC++vL++PtGGkakl++++++r+k
      CCD24049.1 28 PRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTPTGGKAKLSEGTSFRRK 82
                    89***************************************************97 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.8   2.1e-06    0.0093      19      50 ..      35      65 ..      15      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.1e-06
         IBR 19 kwCprpdCeaiiekseg.cksvtCskCgfefCf 50
                ++Cp  +C +i    ++ ++ vtC++C++  C+
  CCD24049.1 35 VKCP--GCLNITTVFSHaQTAVTCESCSTVLCT 65
                79**..*****98888867779**********6 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.2   7.9e-06     0.035       2      29 ..      36      63 ..      35      65 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.9e-06
                  EETTTTCEECHEETSTTCEEESSSSBEE CS
  TF_Zn_Ribbon  2 kCPnCgstnlveDpergelvCtdCGlVl 29
                  kCP C + ++v+ ++++ ++C++C +Vl
    CCD24049.1 36 KCPGCLNITTVFSHAQTAVTCESCSTVL 63
                  9******889**************8876 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2    0.0042        19       2       9 ..      35      42 ..      35      44 .. 0.79
   2 ?    5.0   1.5     0.006        27       3      11 ..      55      63 ..      54      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0042
      zf-ACC  2 tKCpsCge 9 
                +KCp+C +
  CCD24049.1 35 VKCPGCLN 42
                7*****55 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.006
      zf-ACC  3 KCpsCgeml 11
                 C+sC+++l
  CCD24049.1 55 TCESCSTVL 63
                7*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.24s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 684.35
//
Query:       CCD24050.1  [L=489]
Description: hypothetical protein NDAI_0C03900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-65  218.9   0.0    9.4e-65  218.6   0.0    1.1  1  Pkinase        Protein kinase domain
    1.3e-35  122.9   0.0    1.8e-35  122.5   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
  ------ inclusion threshold ------
      0.024   13.6   0.4      0.067   12.1   0.1    1.9  3  Haspin_kinase  Haspin like kinase domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.6   0.0   1.6e-68   9.4e-65       1     264 []      23     317 ..      23     317 .. 0.88

  Alignments for each domain:
  == domain 1  score: 218.6 bits;  conditional E-value: 1.6e-68
                 EEEEEEEEEESSEEEEEEE..ETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykav..eketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee.....kdelylvleyveggeladller 91 
                 +e ++ +G+GsfG + +a+  e+ ++ +vA+K+i+   +++++ k++lrE+k+l++++ h+ni  ly++          +ly+  e+v+++ l ++l+ 
  CCD24050.1  23 FEIVKAIGKGSFGLICSAKytEAVDSTMVAIKQIDSAFQNSRTAKRALRELKLLRHFRnHKNITCLYDTDIVmhpdgVARLYIYEELVDCD-LYQILHS 120
                 578899********9777521667899****************************************86333345667899********99.9*****9 PP

                 HSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHH CS
     Pkinase  92 kgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvl.keneyskkvDvWslG 184
                  +sl++++ + +++qil gl+++Hs++++HrD+Kp N+L++ + +lKi+DFGl++ ++++ +     +t++v t++Y+APE++ ++++ys++vDvWs G
  CCD24050.1 121 GQSLTDSHYQCFIYQILCGLKFIHSANVLHRDIKPGNLLVNADCQLKICDFGLSRGYSNNMTeneqfVTEYVPTKWYRAPEIMlSYQGYSTAVDVWSTG 219
                 99*******************************************************9998899999***************99*************** PP

                 HHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT......SHH...HHHTTS........................-HHHHHHHHHHT-SSGCCST CS
     Pkinase 185 vilyelltgkppfsgekgkekvekeldqlekilkilg......etkeklpeasei........................seeakdllkkllkkdpkkRl 253
                 +il+e+l+gkp+f+   g++     ++ql kil++lg       +k ++                               ++a+dll+k+l+ dp +R+
  CCD24050.1 220 CILAEFLNGKPMFE---GDD----YVNQLNKILQVLGspnietIKKINS-----KnvqdyilqlgnipkipfpvlfpnaTKNAIDLLEKMLTFDPAERI 306
                 **************...444....4555566777777543322333333.....2345568************************************** PP

                 THHHHHTSGGG CS
     Pkinase 254 taeellqhpyl 264
                 t+e++l+hpyl
  CCD24050.1 307 TVESALAHPYL 317
                 *********97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.5   0.0     3e-39   1.8e-35       2     206 ..      24     232 ..      23     311 .. 0.84

  Alignments for each domain:
  == domain 1  score: 122.5 bits;  conditional E-value: 3e-39
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS.-BTTB--EEEEEESSSS....EEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkkl.khpnivkllgvctkeep....llivteyvkgGdLlkfLr 93 
                  e+ k +G+G+fG +++++++  +  +++ Va+K++++  ++++  ++ l+e+k+++++ +h+ni  l+   +  +p     l + e +   dL + L+
   CCD24050.1  24 EIVKAIGKGSFGLICSAKYT--EAVDSTMVAIKQIDSAFQNSRtAKRALRELKLLRHFrNHKNITCLYDTDIVMHPdgvaRLYIYEELVDCDLYQILH 119
                  67899***************..88999********8766655538899*******************987663333334555566666677******* PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.EETTSSTSGGGGS.-HHHHHHSE.EEHHHHH CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey.vkkeeaklpvkWm.apEslkekk.ftsksDv 188
                  +   ++lt ++  +f++q+ +G+++++s +++Hrd+   N L++ + + ki+DfGL+r  +++ +  ++  ++ +p kW+ apE++ + + ++++ Dv
   CCD24050.1 120 SG--QSLTDSHYQCFIYQILCGLKFIHSANVLHRDIKPGNLLVNADCQLKICDFGLSRGYSNNMTEnEQFVTEYVPTKWYrAPEIMLSYQgYSTAVDV 215
                  97..9*****************************************************9955544426777889*****99***9766655******* PP

                  HHHHHHHHHHHTTSSGTT CS
  Pkinase_Tyr 189 WsfGvllwEiftlgespy 206
                  Ws G +l E ++ g+  +
   CCD24050.1 216 WSTGCILAEFLN-GKPMF 232
                  *********998.66554 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.1e-05     0.067     230     259 ..     150     179 ..      60     189 .. 0.92
   2 ?   -2.8   0.0      0.38   2.2e+03     324     358 ..     231     265 ..     222     268 .. 0.74
   3 ?   -3.5   0.0      0.64   3.8e+03     116     154 ..     319     358 ..     304     388 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.1e-05
  Haspin_kinase 230 HRdLhldniLvdknlnvtlidlklsRless 259
                    HRd++ +n Lv++  +  ++d+ lsR  s+
     CCD24050.1 150 HRDIKPGNLLVNADCQLKICDFGLSRGYSN 179
                    **************************8733 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.38
  Haspin_kinase 324 nseaekrvkerleklaklld.paakkkkklfkrkel 358
                      e+  +v+ +l+k+++ l  p+ ++ kk+++++ +
     CCD24050.1 231 MFEGDDYVN-QLNKILQVLGsPNIETIKKINSKNVQ 265
                    555555555.89999999987888999999999876 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.64
  Haspin_kinase 116 vyqtkekdkevvlKvipl..evledvtiskelslkelkslk 154
                    v++ ++ d++v   ++ +  e ++d+   ke+ ++e + ++
     CCD24050.1 319 VWHDSD-DEPVCPQKVDFmfEKVDDLDLLKEMIINEVNDFR 358
                    565554.7777778887666888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3893.07
//
Query:       CCD24051.1  [L=208]
Description: hypothetical protein NDAI_0C03910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-16   58.2   1.5    2.3e-15   56.8   1.5    1.8  1  Calcipressin  Calcipressin


Domain annotation for each model (and alignments):
>> Calcipressin  Calcipressin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   1.5   1.3e-19   2.3e-15      23     186 .]      51     201 ..      21     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 1.3e-19
  Calcipressin  23 ilawsllksFrRiivvfsseeaaaavrsqldwekeeilGkklrlYfaqpttidrdaakkhLalPeaeklFlISPPaSPPegwe.qkaedaPnrtvl. 117
                   +++  +l s +R +++++++ +++ +++     k ++l   l + +  +    ++a kk+L lP+ e lFl+SPPaSPP++++ +k+e  P    + 
    CCD24051.1  51 PIEIVILGSMKRLLIICPNHAISKYIKEMEP--KPDNL--PLNIGYSLVDGRATAAPKKYLELPPHETLFLVSPPASPPPEFDySKCEGPPSSLTHp 143
                   67888999*******************9955..55665..47777888888889999**************************99****99666664 PP

  Calcipressin 118 aeDlqealakLeleekaqlsagkdktpsvdltlvkvevgeseadeeeadevsdtprtkpkivkTarPpv 186
                    +D ++   +L+         ++   + +++tl++++ g ++ d +  +  ++  +   + v+Ta+Pp+
    CCD24051.1 144 SHDEKQQHTTLR--------EET-LKEPGTYTLIDSKSGRITVDTCA-Q-ADRPVHMTLEQVRTAFPPK 201
                   344444433333........222.234578999************99.3.3444445567799999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 1787.68
//
Query:       CCD24052.1  [L=862]
Description: hypothetical protein NDAI_0C03920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-87  292.4   5.0    1.9e-87  292.4   5.0    1.7  2  Peptidase_M1    Peptidase family M1 domain
    6.9e-81  272.2   0.8    1.3e-78  264.7   0.4    2.3  2  ERAP1_C         ERAP1-like C-terminal domain
    5.5e-51  173.4   0.8    1.1e-50  172.4   0.8    1.5  1  Peptidase_M1_N  Peptidase M1 N-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         1     6e+03      94     122 ..     109     137 ..      96     145 .. 0.79
   2 !  292.4   5.0   3.3e-91   1.9e-87       1     218 []     234     451 ..     234     451 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1
                   HHHHHHHHHHHHHHHHHSCCCHCHHHHHH CS
  Peptidase_M1  94 LnEGfatyleylildklepewevseqlll 122
                   Ln  +a ++ ++  dkl +e ++++++++
    CCD24052.1 109 LNDQMAGFYRAKYEDKLTGEIKYMATTQM 137
                   89999999999999999998887766644 PP

  == domain 2  score: 292.4 bits;  conditional E-value: 3.3e-91
                   HHHHHHHHHHHHHHHHHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHH CS
  Peptidase_M1   1 yalevtkkllefleeyfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEG 97 
                   +a + t+k+l+f+e++f+++Yplpk+d va+++fsagAMEnwgl+tyr   +l+d++ns+ ++ ++vaev+ HElaHqWfGnlVtm+wW+ lwLnEG
    CCD24052.1 234 FAADLTAKTLDFFENTFGIKYPLPKMDNVAVHEFSAGAMENWGLVTYRVVDVLLDEKNSTLDRIQRVAEVVQHELAHQWFGNLVTMDWWEGLWLNEG 330
                   68999******************************************************************************************** PP

                   HHHHHHHHHHHHHSCCCHCHHHHHHHCHHHHHHHHTSTTHHHSSGG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHCTTEEE CS
  Peptidase_M1  98 fatyleylildklepewevseqllleeveealsedaldeshpitqevekpseidevFdsiaYeKGasllrmlekllgeevFqkglksYlkefkykna 194
                   fat+++++++++++p+w+v++q++++++++al+ d+l++shpi++ v+++++i+++Fd+i+Y+KGasllrm++k+lge+vF kg+++Yl++fky+na
    CCD24052.1 331 FATWMSWYSCNEFQPTWNVWQQYVTDTLQHALNLDSLRSSHPIEVPVKRAEDINQIFDAISYSKGASLLRMISKWLGEDVFIKGVSQYLSQFKYGNA 427
                   ************************************************************************************************* PP

                   -HHHHHHHHHHCCCSCHHTHHHHH CS
  Peptidase_M1 195 etedlwdaleealnkdisevmdtw 218
                   +tedlw+al++a++kd+s+vm+ w
    CCD24052.1 428 KTEDLWTALSKASGKDVSSVMNIW 451
                   **********************99 PP

>> ERAP1_C  ERAP1-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0017        10       3      23 ..     108     128 ..     108     145 .. 0.80
   2 !  264.7   0.4   2.2e-82   1.3e-78       1     314 [.     523     838 ..     523     839 .. 0.95

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0017
                 EESGGG-SSSEEEE-HHHHHH CS
     ERAP1_C   3 llNdddtGyyrVnYdeeslaa 23 
                 +lNd++ G+yr +Y++++   
  CCD24052.1 108 ILNDQMAGFYRAKYEDKLTGE 128
                 69************9987655 PP

  == domain 2  score: 264.7 bits;  conditional E-value: 2.2e-82
                 -EEESGGG-SSSEEEE-HHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHGGG.GGGG--SHHHHHHHHHHHHHHHHHHT.TST.THH CS
     ERAP1_C   1 lvllNdddtGyyrVnYdeeslaalleqllskklspldRaglisdafalaragelsaadlldlllgylanEtdylvwsqalsqlatlkslls.adp.lya 97 
                 +++ N+d++G y ++Y++e++a++++q    +ls++dR+gl++da +l+ +g+ s++++l+l++++ ++E++++v++q+++++++lk++++ +++ +++
  CCD24052.1 523 FFKANSDQSGIYITSYSDERWAKFSKQ--AHLLSVEDRTGLVADAKSLSASGYTSTTNFLNLVANW-KDEESFVVLDQIINSISSLKATWAfEPEeVRD 618
                 799***********************7..566**********************************.7**********************864447*** PP

                 HHHHHHHHHHHHHHHHHHHT...TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHCSTT.-S-HHHHHHHHHHHHHHS-HHHHHHHHHHHHC-S CS
     ERAP1_C  98 alkaflrklleplaeklgwe..pgeshldaqlrslllsaacaagdpevveearklfkawlegdd.lippdlrwavycalaanggeaewdallerykdts 193
                 +l+af+r+l++  a+ lgwe  +++s+ ++  +++l+sa caa dp + + a ++f+++++gd+ +ip+ ++ +v++++a+ gge+ +++++++yk++s
  CCD24052.1 619 SLDAFTRSLVSEKAHTLGWEfnDSDSFATQRTKVALFSASCAARDPVTERSAIEMFEKYVAGDKkAIPALIKPSVFNTAARVGGEENYEKIYQIYKNPS 717
                 *******************553779************************************99855********************************* PP

                 SHHHHHHHHHHHCC-S-HHHHHHHHHHCTTT..S-GGGHHHHHHHH.HSTTHHHHHHHHHHHCHCCHHHHTS.STSCHHHHHHHHHTT--SHHHHHHHH CS
     ERAP1_C 194 apsekeaalralaatpdpellerllnfvlesdevrnqdlrallaglannpegrellwefvkenwdalakrws.ggeildrivkgllpgftseeelaeie 291
                 +++ek aalr l+ ++d++ller+l ++l +++v nqd++++++g++ ++eg  +lw +++ nw +++kr++ g ++l+++v+++++gfts + ++ei+
  CCD24052.1 718 NNDEKIAALRTLGRFKDAKLLERTLGYLL-DGTVLNQDIYIPMQGMRAHKEGIVALWGWLQANWTEVSKRLPpGLSMLGSVVTICTSGFTSFKAIDEIK 815
                 99***************************.99**************888**********************8345599********************* PP

                 HHHCHTT--GGGHHHHHHHHHHH CS
     ERAP1_C 292 affadkdtpglrrtlkqaletvr 314
                 aff++  t+g++++l+q+l+t++
  CCD24052.1 816 AFFDKISTKGFDQGLAQSLDTIK 838
                 ***999***************98 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.4   0.8   1.9e-54   1.1e-50       2     186 .]      17     200 ..      16     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 172.4 bits;  conditional E-value: 1.9e-54
                     EEEEEEEEEEETTTTEEEEEEEEEEEES.S-ECEEEEEESSEEEECEEEEECTTCTCEEEEEEEECTTTTCEEEEECCEEET.TCEEEEEEEEEE CS
  Peptidase_M1_N   2 pehYdldlkidlkektfkGsvtitlqlk.eatseivldakdlkiksvslsaevksesvkidfkieqkdeelltiklkeslqq.tskytLeieyeg 94 
                     p hYdl++++++k++tfkG ++i+l+++ +++++i l+a d++i+s +l   +++e+++i    +++++ + +i  + +l++  ++ tLe +++g
      CCD24052.1  17 PLHYDLQIEPNFKDFTFKGIAKIELKINdKNVDSIQLNALDIEIQSSKLA--SNIEPSQIV--PNKETQVVDFIFPDGTLSKvGESTTLELNFTG 107
                     99******************************************666666..444444444..44555555678889999999************ PP

                     E-BSSSSEEEEEEEEE..TSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEETTCEEEEEEEEEESBEGGG CS
  Peptidase_M1_N  95 elndklaGlykstYtd..kgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeeseklengqkiteFeqtpkmstYL 186
                      lnd++aG+y+ +Y+d  +ge k++++Tq+e+tdAR+afPCfDeP+ KA f i++ ++ + t+lSnm+++ +e  eng+k t+F+ tpkmstYL
      CCD24052.1 108 ILNDQMAGFYRAKYEDklTGEIKYMATTQMEPTDARRAFPCFDEPNLKASFGITLVSDPSLTHLSNMDVK-EEHVENGKKFTTFNVTPKMSTYL 200
                     ****************99***************************************************9.677779****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (862 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 6261.59
//
Query:       CCD24053.1  [L=310]
Description: hypothetical protein NDAI_0C03930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.6e-11   41.8   0.0      3e-08   33.4   0.0    2.3  2  adh_short     short chain dehydrogenase
    1.2e-06   28.3   0.0    1.2e-05   25.0   0.0    2.1  1  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    0.00067   19.1   0.0     0.0011   18.4   0.0    1.3  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
     0.0011   18.9   0.0      0.002   18.1   0.0    1.4  1  KR            KR domain
     0.0021   17.6   0.1     0.0036   16.8   0.1    1.4  1  Epimerase     NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   8.2e-12     3e-08       3     124 ..      28     137 ..      26     144 .. 0.91
   2 !    6.1   0.0    0.0018       6.6     168     189 ..     196     217 ..     175     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 8.2e-12
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SSGGGCSHHHH CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgkldvLvnNAGitgsgpfselseeew 101
                 ++v G++sGIGrai+++la +Ga+v+vv+r+ ++       +    +k+ ++++D++  +e++++ +++    + +  ++  +Gi   +p+ e + e +
  CCD24053.1  28 AVVFGGTSGIGRAISHQLADRGANVLVVGRHFKDE-----DM----KKIKFLHADLSLITEADRIANEI--PAKDITHMIFTTGI-VAAPQREQTPEGI 114
                 89****************************96644.....33....3589*******************..5579**********.899********** PP

                 HHHHHHHTHHHHHHHHHHHHHHH CS
   adh_short 102 ervievNltgvflltravlpaml 124
                 er ++v + + ++l+r+++ +m 
  CCD24053.1 115 ERDMAVSYLSRYMLIRELAGKMG 137
                 ****************9998885 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0018
                 GGGTEEEEEEEESSBSSHHHHH CS
   adh_short 168 aptgirvnavaPGlvdTdmake 189
                 ++++++v +++PG+++T+++++
  CCD24053.1 196 RYKNVEVFGLNPGIIKTEIRNN 217
                 5688**************9986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.4e-09   1.2e-05       3     217 ..      34     254 ..      32     265 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 3.4e-09
                   TTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSEEEE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHH CS
  adh_short_C2   3 asgIGraiAkalaeeGaevvltdlneeakkrveelaeelgaevlecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdral 99 
                    sgIGrai ++la++Ga+v+++ ++ ++ +++++       ++l++D +  ++ +++++e+ +k   +  ++   gi+ +   p  e + e+++r +
    CCD24053.1  34 TSGIGRAISHQLADRGANVLVVGRHFKD-EDMKK------IKFLHADLSLITEADRIANEIPAK--DITHMIFTTGIVAA---PQREQTPEGIERDM 118
                   69*********************99998.34444......458******************998..78889999999998...7789********** PP

                   HHHTHHHHHHHHHHHHHCTSC.......CEEEEEEEGGGTSBSTTTTHHHHHHH..HHHHHHHHHHHHHG....G....GTEEEEEEEE--BHCTGG CS
  adh_short_C2 100 dvnlyslfllakaalplmkeg.......gsivnlssvgaervvpnynaygaaKa..alealtrylAvelg....p....kgiRvNavspgpikTlaa 179
                   +v+  s ++l+++++  m +g        +i  + + g+ +  +  n  +  K   al   + ++A++ +    +    k++ v    pg+ikT++ 
    CCD24053.1 119 AVSYLSRYMLIRELAGKMGKGlphnaskPRIFIMGFPGSGQLGDPENLNSDKKKynALSTHSNTVAANEAlvldSkdryKNVEVFGLNPGIIKTEIR 215
                   ****************99999888877677*******99999988887777775224444444444432212222234489**************** PP

                   GGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHH.HHCSG CS
  adh_short_C2 180 sgikgfdelleelearaplgrlgtpeevaeaal.fLasd 217
                   +++ g+d++ +++ ++       tpe+ a+ ++  L+s+
    CCD24053.1 216 NNYLGKDSIFSKAVEWVVGWTCQTPEDYAKNICpLLVSP 254
                   *********999998877666779999997666144565 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     3e-07    0.0011      22     111 ..      12      99 ..       4     108 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 3e-07
                   CCHTTCCGSBS-GTTSE.EEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSH CS
  2-Hacid_dh_C  22 ewksekallgkelsgkt.vGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgvelvsleellaesDivslhlpltpetrhlina 111
                   +w ++k++++ +l +   v   G+  IG+a+ + l+  g++v+++ r+ k+e+ +++ ++ +++l  l+ e+D + + +p+++ t+ +++ 
    CCD24053.1  12 KW-EHKDISQLDLCKVNaVVFGGTSGIGRAISHQLADRGANVLVVGRHFKDED-MKKIKFLHADL-SLITEADRIANEIPAKDITHMIFTT 99 
                   45.5555666555554404555899***********************99777.88877766666.6999***************999875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.4e-07     0.002       4      49 ..      29      71 ..      27     111 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.4e-07
                EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHH CS
          KR  4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaele 49
                ++ GG+ g+G++++++la++ga+ l +++R+  +ded+k +i+ l+
  CCD24053.1 29 VVFGGTSGIGRAISHQLADRGANVL-VVGRH-FKDEDMK-KIKFLH 71
                799******************9766.57999.4455555.455444 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   9.9e-07    0.0036       2      71 ..      29      95 ..      28     114 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 9.9e-07
                EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHCEEEE--TT-HHHHHHHHHHHT-SEEEE- CS
   Epimerase  2 lVtGatGfiGsalvkallekgyevigldrlssasntarledlelveldltdrsalerlfkeeqpdavihl 71
                +V G+t  iG+a+ ++l+++g +v+++ r    ++ +  +++++ ++dl   ++ +r+ +e  +  + h+
  CCD24053.1 29 VVFGGTSGIGRAISHQLADRGANVLVVGRH---FKDEDMKKIKFLHADLSLITEADRIANEIPAKDITHM 95
                799***************************...6666677779*****9988888888777665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2301.08
//
Query:       CCD24054.1  [L=678]
Description: hypothetical protein NDAI_0C03940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-72  244.3   0.0    1.9e-72  243.5   0.0    1.4  1  FAD_binding_1  FAD binding domain
    2.8e-29  102.1   0.2    4.8e-29  101.4   0.2    1.4  1  Flavodoxin_1   Flavodoxin
    1.4e-21   77.2   0.0    3.7e-21   75.8   0.0    1.8  1  NAD_binding_1  Oxidoreductase NAD-binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.5   0.0   3.1e-76   1.9e-72       2     221 ..     253     469 ..     252     470 .. 0.99

  Alignments for each domain:
  == domain 1  score: 243.5 bits;  conditional E-value: 3.1e-76
                    --BTTB-EEEEEEEEEE---.-SS--EEEEEEE-TTBT----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEH CS
  FAD_binding_1   2 pfdakkvflakvlknreLtkpesernvihveldisdsglkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTl 97 
                    pf a+++f+a++ k+ eL+  + ern+ih e+dis s++ Y+tGdhlg++psN  e+V+++l++++l+p  d++++l + d+  + k p+++ptT+
     CCD24054.1 253 PFTAAQPFIAPIIKSHELFT-SVERNCIHSEFDISSSNISYSTGDHLGIWPSNATEKVQQFLNVFNLNP--DTIFNLVSQDK--TIKVPFPCPTTV 343
                    8999****************.************************************************..**********5..8*********** PP

                    HHHHHHTB--SS---HHHHHHHGGG-SSHHHHHHHHHHHH-..HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TT CS
  FAD_binding_1  98 rqalkyylditgppskqlleaLaefaseeeekqkLekLssd..egakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSsssk 191
                    ++++++yl+itgp+s+q++e+L++fa++ + k+kL+kL++d  ++++e++++++n a++ll+++ + ++  +p efL+e++p+L+pRyYSiSsss 
     CCD24054.1 344 GAVIRHYLEITGPVSRQFFEHLIQFAPNSSIKEKLTKLAKDkdAFQQEITSKYFNLADALLYLSGGSKWESIPWEFLIENIPKLQPRYYSISSSSL 439
                    ****************************************999***************************************************** PP

                    TTTTEEEEEEE--EE---SSS--EE-HHHH CS
  FAD_binding_1 192 vhpdevhltvvVveyetdgegrirkGvcsn 221
                    ++ +++h+t+vV++ ++ ++g    Gv++n
     CCD24054.1 440 SERNTIHVTSVVENTPNPKTGSNIVGVTTN 469
                    *****************9**********98 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.2   8.1e-33   4.8e-29       1     143 []      59     197 ..      59     197 .. 0.91

  Alignments for each domain:
  == domain 1  score: 101.4 bits;  conditional E-value: 8.1e-33
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEE..GTTSC.GGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEE CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvsls..dydes.lseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfg 94 
                   +l+gS+tG++e++Ak+  +el+  +fn +v++++   yd++ lse++++ l+ + +sT+g+Gd+p+ +  +f+ +l+  g    +  l++++f++fg
    CCD24054.1  59 VLFGSQTGTAEDYAKKFSKELS-SKFNLNVLCADleLYDYDtLSELPNNVLVSIFMSTYGEGDFPDGAI-PFETFLTTTG----ENSLTNLNFSIFG 149
                   89*******************9.6888888875411566668***********************7776.9999999995....678********** PP

                   EECTTSSSTTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHHHHHH CS
  Flavodoxin_1  95 lGdsayenFcaagkkldekleelGaerllkllegdednqegqeeafrkW 143
                   lG+s+ye ++ a++k+ + l+ +G++ l+  +egd+++   ++e++ +W
    CCD24054.1 150 LGNSTYEFYNGAARKVLKYLQSAGGNLLGSIGEGDDAT-GSTDEDYLTW 197
                   *************************************9.7899999888 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0   6.2e-25   3.7e-21       1     108 [.     529     642 ..     529     643 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 6.2e-25
                    EEEEGGGGHHHHHHHHHHHHH.CT....TCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHH...H CS
  NAD_binding_1   1 miagGtGiaPvrsvlrailee.ak....dktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleells...l 88 
                    mi++GtG+aP+r+++r+++++ +k    + +k++l+yG+r+e+d ly+ee+ ++a+ l +++++  + sr + ++   k++vqd+l e++ +   l
     CCD24054.1 529 MIGPGTGVAPFRGFIRERVAQvEKdnsiKLGKHILFYGCRNEQDYLYQEEWSKYATVLGESFEMNVAFSRVPGTK---KVYVQDKLNEMSSDiwdL 621
                    9*******************95558888789*****************************99999999******9...********9988889998 PP

                    SSTTEEEEEEC.SHHHHHHHH CS
  NAD_binding_1  89 kkeethvyvCG.ppgMikavr 108
                     k+++ +yvCG + +M+k+v+
     CCD24054.1 622 LKKGAYIYVCGdAGRMAKDVS 642
                    8**********9999***996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       818  (0.0456244); expected 358.6 (0.02)
Passed bias filter:                      665  (0.0370907); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.30s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 4977.42
//
Query:       CCD24055.1  [L=310]
Description: hypothetical protein NDAI_0C03950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-45  156.0   0.1    1.4e-45  155.6   0.1    1.1  1  MAGE      MAGE family
  ------ inclusion threshold ------
       0.03   14.7   2.8        1.7    9.1   0.0    2.9  3  YtzH      YtzH-like protein
       0.17   11.7   0.4        5.1    6.9   0.4    2.3  1  DUF3463   Domain of unknown function (DUF3463)


Domain annotation for each model (and alignments):
>> MAGE  MAGE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.1   2.4e-49   1.4e-45       2     211 ..      29     270 ..      28     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 155.6 bits;  conditional E-value: 2.4e-49
        MAGE   2 VRla.lacesqrtpIrRedikkkvlgk......qgkrafkkvfeeaqkqLrdvFGmeLvelpskeekkstessqekr...aaekak.......skkstr 83 
                 VR+  +++esq+t+I+++++k+ vl++       ++  f+kvf+e++++L dv+G+eL++lpsk  +++ ++s+++                 ++   r
  CCD24055.1  29 VRYLlSSAESQNTIITQSKLKT-VLRDiysqqkISNIPFNKVFAEINNILGDVYGYELKGLPSKIVNNNVTNSNNNSnknP----GnrtkeveEALGYR 122
                 9**98899**************.******98654489***************************65554444444432231....123345668999** PP

        MAGE  84 sksyiLvstlpeeyreaaaiiapskiesealeekeaa..................................ykGiltvvlslillsggsiseqeLekyL 148
                 +  yiLv+++p   +   +++ + +i+         +                                  +kG+l+v+l+++l+s+++i++qeL + L
  CCD24055.1 123 ATCYILVNKMPYLKNFDEFKLLQ-SIR---------TyedlvvdgqyvgddvglenlntlenklsvdqdlvFKGLLSVILCIVLFSKNNILHQELLSAL 211
                 ************55444444433.334.........222234555689*************************************************** PP

        MAGE 149 krlgldenstskeitklklkldelLkklvkqgYlvrekeskasdeeeekveyrvGpRakvEig 211
                 +++g+++++t  +i++lk+++d+l+k+l+k++Ylv+ +e  +sd e+  + yr+G+R+++E+g
  CCD24055.1 212 EKFGVPTDGT--KIPILKWSIDDLMKNLEKKEYLVKLEE--KSDIEGSLILYRIGRRTQAEFG 270
                 ********87..79*************************..89*******************9 PP

>> YtzH  YtzH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.2    0.0051        31      40      59 ..      38      59 ..      19      68 .. 0.74
   2 ?    9.1   0.0   0.00029       1.7      43      78 ..      68     103 ..      62     106 .. 0.88
   3 ?   -3.2   0.0         2   1.2e+04      40      50 ..     198     209 ..     169     213 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0051
        YtzH 40 aneev..dedvkqvLeeiYays 59
                 ++ +  ++++k+vL++iY+ +
  CCD24055.1 38 SQNTIitQSKLKTVLRDIYSQQ 59
                4444447889********7654 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00029
        YtzH  43 evdedvkqvLeeiYaysqegkssqsldnhieanqde 78 
                 +v +++ ++L ++Y y  +g  s+ ++n++++++++
  CCD24055.1  68 KVFAEINNILGDVYGYELKGLPSKIVNNNVTNSNNN 103
                 67789********************99999888776 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2
        YtzH  40 aneev.dedvkq 50 
                  ++++ ++++ +
  CCD24055.1 198 SKNNIlHQELLS 209
                 223322555555 PP

>> DUF3463  Domain of unknown function (DUF3463)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.4   0.00086       5.1       4      44 ..      28      69 ..      25     154 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00086
     DUF3463  4 spgysYekapdqdlflerektkelfrkilelkkkk.yklnes 44
                ++ y  ++a++q++ ++++k+k+++r+i++++k +   +n+ 
  CCD24055.1 28 AVRYLLSSAESQNTIITQSKLKTVLRDIYSQQKISnIPFNKV 69
                677888999999999999999999999999888655666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2219.96
//
Query:       CCD24056.1  [L=291]
Description: hypothetical protein NDAI_0C03960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-71  239.1   0.0      7e-71  238.9   0.0    1.0  1  Inositol_P     Inositol monophosphatase family
  ------ inclusion threshold ------
       0.29   11.4   3.4       0.64   10.3   3.4    1.6  1  Gamma-thionin  Gamma-thionin family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.9   0.0   7.8e-75     7e-71       9     268 ..      15     282 ..       7     286 .. 0.88

  Alignments for each domain:
  == domain 1  score: 238.9 bits;  conditional E-value: 7.8e-75
                 HHHHHH.HHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHHHHHT-SG- CS
  Inositol_P   9 avelaa.kagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTknFvrgipqv 106
                  v+l++ ++g +++e+ + ++++  e++ ++++dlvt +d++ve++i+eal++k+p+ k++gee++ +g+ +++++d +t+ivDPiDGT+nF++g+p+ 
  CCD24056.1  15 LVKLVQeEIGPIIKEHTG-TKFDTYEDK-ANQVDLVTVVDKKVESIIKEALNKKYPTFKFIGEESYVPGQ-TKISKD-PTFIVDPIDGTTNFIHGYPYS 109
                 56666669*********9.999988888.8****************************************.999999.********************* PP

                 EEEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETCEEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCH........EEEBESSHH CS
  Inositol_P 107 aVsigllvegkpvlGviaqPllgqlysaakgkGaflngeklplsrappiseallvtlfavssrkdtseasllekvesavsae........gvrsvgssa 197
                 ++s+gl+++gkpv+Gv+ +P+l+ql++a+kg+Ga+ln+ k+ + ++p + ++++v+l+ + +r++ s  ++ +k+ + ++          g+rsvgs+a
  CCD24056.1 110 CTSLGLAEDGKPVVGVVFNPHLNQLFHASKGNGAYLNSFKINVPKRPLTLQKSVVGLEGGAERSEGSG-NFDKKMATYKNLLsdkggyihGFRSVGSAA 207
                 ***********************************************999**9999999888887776.6666666666555666************** PP

                 HHHHHHHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEESSSC.......SSSTTSSEEEEESCHHHHHHHHHHHC CS
  Inositol_P 198 lklaavaeGkadaylefgrekkWDhAAGeaileeaGGvvtdakge.......grlllargiiaanqkelaellaaave 268
                 +++++va G +d y+e g ++ WD++AG++ilee GG+++  + +       +r++ a ++ +++  e ++ ++++++
  CCD24056.1 208 MNMCYVANGMLDSYWEGG-CWAWDVCAGWCILEETGGKMVGGNPNeweipidRRCYFAVRGGCTK--EEQKDYVESFW 282
                 ******************.*********************9999976666666666555555555..55555565555 PP

>> Gamma-thionin  Gamma-thionin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.4   7.1e-05      0.64      10      30 ..     222     242 ..     218     272 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.1e-05
                    --S---THHHHHHHHHHTTSS CS
  Gamma-thionin  10 fkgpClsdsnCasvCknegfs 30 
                    ++g C++++ Ca  C+ e+ +
     CCD24056.1 222 WEGGCWAWDVCAGWCILEETG 242
                    9***************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2044.06
//
Query:       CCD24057.1  [L=121]
Description: hypothetical protein NDAI_0C03970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-17   62.1   2.3    6.4e-17   61.7   2.3    1.2  1  DUF836         Glutaredoxin-like domain (DUF836)
    0.00016   21.8   0.1    0.00039   20.6   0.1    1.7  1  Glutaredoxin   Glutaredoxin
  ------ inclusion threshold ------
      0.064   13.7   0.3      0.082   13.4   0.3    1.2  1  Thioredoxin_2  Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   2.3   1.1e-20   6.4e-17       1      82 []      30     118 ..      30     118 .. 0.87

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 1.1e-20
                 -EEEEE-TT-HHHHHHHHHHHH..HCCCTT.....EEEEEEETT..T-CCCHCCCCTTTTEEEECTTCGGB.TCCECGCCB-HHHHHHHHH CS
      DUF836   1 kltLyskpgChlCeqakekLke..lkleeg.....leleviDIa..kdeeleakYgleipvlalegvkktsslleelswrldeeqLaaele 82 
                 +ltLyskp+C+lCe+ake+++e  l  +e+     ++l+ ++I+  k+++++ kY+ ++pvl++e+ +k+ + le++ +++de+++ +++e
  CCD24057.1  30 RLTLYSKPNCGLCEEAKEIIQEdiL-SQEKfkrykVKLKIVNIDdlKNKKWWIKYCFDVPVLHIENESKKGQ-LERVFHKMDEKEILDKIE 118
                 59********************852.344456777999999999889999****************766666.************999886 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   6.6e-08   0.00039       2      42 ..      32      82 ..      31      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 6.6e-08
                  EEEESTSSHHHHHHHHHH..........HHTTGGEEEEEGCCSHHHHHHHH CS
  Glutaredoxin  2 vlftkptCpyCkkakrlL..........kelgvkfeeidvdkdeeireelk 42
                  +l++kp+C+ C  ak++           k+++vk +++++d+ ++ + ++k
    CCD24057.1 32 TLYSKPNCGLCEEAKEIIqedilsqekfKRYKVKLKIVNIDDLKNKKWWIK 82
                  79****************99999999999999*********9977776665 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   1.4e-05     0.082       9      77 ..      31     103 ..      27     116 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
  Thioredoxin_2   9 lvvftdpdCpyCkklkkelkel....ddvtvrvllfplkpsfepkavaiwcakekkkafkd.........ieenvelarkyg 77 
                    l+++++p+C+ C+  k+ ++e+    +   ++      + +++ k+v+i+  k+k k + +         ie +++ ++  +
     CCD24057.1  31 LTLYSKPNCGLCEEAKEIIQEDilsqE---KF-----KRYKVKLKIVNIDDLKNK-KWWIKycfdvpvlhIENESKKGQLER 103
                    67899**********999999974333...33.....555899***********9.68887888888888777777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 893.18
//
Query:       CCD24058.1  [L=906]
Description: hypothetical protein NDAI_0C03980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   15.5  11.4      0.011   15.5  11.4    6.7  8  DUF724    Protein of unknown function (DUF724)
        3.9    7.6  94.5       0.55   10.4  26.4    5.6  6  ATG16     Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.4      0.55   4.9e+03     131     131 ..     114     114 ..      69     187 .. 0.55
   2 ?   -1.1   0.6      0.16   1.5e+03     113     172 ..     156     215 ..     140     222 .. 0.56
   3 ?   15.5  11.4   1.3e-06     0.011     100     186 ..     217     303 ..     210     304 .. 0.94
   4 ?    3.6   7.7     0.006        53      97     184 ..     277     364 ..     275     368 .. 0.91
   5 ?   -0.0   4.3     0.074   6.7e+02      99     146 ..     300     347 ..     296     388 .. 0.62
   6 ?   -1.9  15.2      0.27   2.5e+03      90     183 ..     522     615 ..     465     626 .. 0.57
   7 ?    0.0  15.7     0.072   6.4e+02      95     183 ..     597     682 ..     581     686 .. 0.70
   8 ?    3.9  13.5    0.0047        42      96     179 ..     693     776 ..     685     784 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.55
      DUF724 131 e 131
                 e
  CCD24058.1 114 E 114
                 1 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.16
      DUF724 113 klekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaeklee 172
                   ++k ++ ++ + k++ + ++ + ++++l++ +++  +++ +++  + +  ++++k++ 
  CCD24058.1 156 TSKSKNKNPDNGDIKAKLSSSKSKLNVAQLNKSNTTNTTENATSNDVLLEAFTNTQKICA 215
                 334444444444445555555666667777777766666665555555555555555544 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 1.3e-06
      DUF724 100 lkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeFeavas 186
                 lk+e +  ++e +kl++++++ e++++k++e+++++++  ++le+ ++ lk+kk  +d+++++ k++ e++++++ + +++ e+++s
  CCD24058.1 217 LKHEVQLQQTENNKLKSQLRNYENDSKKISEKVNQFKRLLSNLEESSKYLKSKKTVNDQQLSDFKKSHESIQRRIYQYNTDIEELKS 303
                 7888888899*****************************************************************999999888776 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.006
      DUF724  97 LlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeFeav 184
                 L  +k++++++++++ +++ +iee +s+++kl+ + ++++ +i++ +++ + lk++ ++ + ++++ k ++++l +e  + ++eF+++
  CCD24058.1 277 LSDFKKSHESIQRRIYQYNTDIEELKSSMNKLQVSKKQTDIEIIKKNKEIEYLKREVDDYSGQLSEEKIKNSSLFQEFIELREEFKHL 364
                 6678999999999999999999999999999999999999999999999999999999999999999999999999999999999976 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.074
      DUF724  99 slkdeqtklleerkklekkieeeesekrkleeeidelekkilelerql 146
                 +lk++ +kl+  +k+ + +i ++++e + l+ e+d+ + + +e + ++
  CCD24058.1 300 ELKSSMNKLQVSKKQTDIEIIKKNKEIEYLKREVDDYSGQLSEEKIKN 347
                 455556666666666666666666666666666655555555444333 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 0.27
      DUF724  90 lqsrlnkLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeFea 183
                 + + +n+L +l +e++  l++++k++++i e +++ ++l+++  e+ ++  + e q + l +  e++  e++r   +++kl++++++ ++++++
  CCD24058.1 522 PVQLVNDLNKLIQEYQLQLTTSEKYKSDIGELQNQVASLQQQKTENIRELGTKEAQYDELVKSLEEKTIELSRHVDKNQKLNDTIQELQENVRS 615
                 5555566666666666666666666666666666666665554444333333333333344555555555555555555555555555555444 PP

  == domain 7  score: 0.0 bits;  conditional E-value: 0.072
      DUF724  95 nkLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeFea 183
                 +k  +l+d  ++l+e+ + +++++e+ ++  +k+e++  + e+kil  ++   +l +k+e  +k++ +l+++++++e++++d  ++F++
  CCD24058.1 597 DKNQKLNDTIQELQENVRSYKEQLEKVQE-VSKIEKS--NCENKILSQNEITNVLNSKNEMLKKRVEQLEASKASYEKDHNDRLDKFQK 682
                 34444555555555555555555543333.3333333..78888999989899999**************************9999997 PP

  == domain 8  score: 3.9 bits;  conditional E-value: 0.0047
      DUF724  96 kLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveq 179
                 +L++lk +  +l+e  +kl++ +ee++  +++  +e++ l++ki+ l+ +++ l ++k +   +  +++s +++ ++++   e+
  CCD24058.1 693 ELVQLKAQELELEEDNRKLKRALEEKSFGDEENVNELRVLKEKIISLNCEKQNLVAEKLEIRDKKEEIESLVKSKNQRIIMLET 776
                 89*******************************************999999988877777777777777777777776655555 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  17.9   0.00034         3      33     157 ..     172     288 ..     143     289 .. 0.81
   2 ?   10.4  26.4   6.2e-05      0.55       6     184 ..     185     364 ..     182     389 .. 0.79
   3 ?   10.1  19.8   7.7e-05      0.69      21     181 ..     465     636 ..     455     639 .. 0.75
   4 ?    7.4  17.6   0.00053       4.7      97     179 ..     631     713 ..     624     717 .. 0.93
   5 ?   -1.3   2.7      0.24   2.2e+03      79     123 ..     739     783 ..     722     809 .. 0.59
   6 ?   -2.8   3.7      0.69   6.2e+03       4      42 ..     749     789 ..     746     877 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00034
       ATG16  33 aleaenaklekaaasaks....sksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlae 127
                 +l++ +           s     + +k++ +++++++++sn +  +  +++++ +a l++e++  + ++++l+++l++ ++  +k  ek ++ ++ l +
  CCD24058.1 172 KLSSSK-----------SklnvAQLNKSN-TTNTTENATSNDVLLEAFTNTQKICANLKHEVQLQQTENNKLKSQLRNYENDSKKISEKVNQFKRLLSN 258
                 233333...........223322233333.3333333335889******************************************************** PP

       ATG16 128 leaeraaletklkdreeelrekeklvqdlq 157
                 le++ + l+ k   ++++l + +k ++ +q
  CCD24058.1 259 LEESSKYLKSKKTVNDQQLSDFKKSHESIQ 288
                 *********************999999887 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 6.2e-05
       ATG16   6 LreRdarqekafa....eliqaynrLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgel 100
                 L++ + ++++ +a     l +a+++  +  + l++e +  +++ ++ ks     + ++ +++s     +k s+k+++ + +l+ l e  + l  +++ +
  CCD24058.1 185 LNKSNTTNTTENAtsndVLLEAFTNTQKICANLKHEVQLQQTENNKLKS-----QLRNYENDS-----KKISEKVNQFKRLLSNLEESSKYLKSKKTVN 273
                 5555555444333333388899999999999999987666555333333.....333333333.....3569999************************ PP

       ATG16 101 aqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklr.......klekENkeL 184
                  q+l + +++++  ++++ + ++ ++el+++ ++l+   k+ + e+  k+k ++ l+ E++    ql+    k+        +l++E k+L
  CCD24058.1 274 DQQLSDFKKSHESIQRRIYQYNTDIEELKSSMNKLQVSKKQTDIEIIKKNKEIEYLKREVDDYSGQLSEEKIKNSslfqefiELREEFKHL 364
                 **************************************************************99999987777775555555555555555 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 7.7e-05
       ATG16  21 iqaynrLldrtsaleaenaklekaaasaks..sksskksakekeasasq..........snskqsakiqsleqklaqlreelaelyksr...gelaqrl 104
                 i++++++l++  +++   ++l ++ + +    +      ++++ea ++           sns+  + +++l++++++ + +l+++ k +   gel++++
  CCD24058.1 465 IETHKEILEQFLEQKVNISQLLNNLQGKICdgN------ETTQEALSKIvkdiketifiSNSEPVQLVNDLNKLIQEYQLQLTTSEKYKsdiGELQNQV 557
                 677777777777777777777555443332321......222222222244666788999999999999999999999999999988774457999999 PP

       ATG16 105 lelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklr..klekEN 181
                  +l+++  +  ++l ++e++ +el ++ ++ + +l+++ ++ + ++ ++q+lq+ + + + ql+++ e ++  k + EN
  CCD24058.1 558 ASLQQQKTENIRELGTKEAQYDELVKSLEEKTIELSRHVDKNQKLNDTIQELQENVRSYKEQLEKVQEVSKieKSNCEN 636
                 9999999999999999999999999999999999999999999999999999999999999999887654422445555 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.00053
       ATG16  97 rgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklek 179
                 ++  ++++l+ ne   +l++k +  ++r+++lea++a+ e+  +dr ++++  ++ vq l  El++L+ q   +Ee +rkl++
  CCD24058.1 631 KSNCENKILSQNEITNVLNSKNEMLKKRVEQLEASKASYEKDHNDRLDKFQKNNEQVQRLNVELVQLKAQELELEEDNRKLKR 713
                 55667899999**********************************************************************85 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.24
       ATG16  79 leqklaqlreelaelyksrgelaqrllelneelqkleeklkedee 123
                 l+ + + l +e  e   +++e ++ ++++n+ +  le+klk++ e
  CCD24058.1 739 LNCEKQNLVAEKLEIRDKKEEIESLVKSKNQRIIMLETKLKQQLE 783
                 333444444444444444555555555555555555555554444 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 0.69
       ATG16   4 aqLreRdarqekafaeliqaynr....Lldrtsaleaenakle 42 
                 ++L+ Rd++  +  ++l++  n+    L  + +++ + n+kl+
  CCD24058.1 749 EKLEIRDKK--EEIESLVKSKNQriimLETKLKQQLEINEKLK 789
                 566667764..33344444444444433333333333344442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3563  (0.198728); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                       160  (0.00892409); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.97u 0.36s 00:00:02.33 Elapsed: 00:00:00.66
# Mc/sec: 4119.41
//
Query:       CCD24059.1  [L=309]
Description: hypothetical protein NDAI_0C03990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-22   79.4   0.3      2e-22   79.4   0.3    2.3  2  PAP2             PAP2 superfamily
    0.00022   21.6   0.7     0.0056   17.1   0.2    2.3  2  MerC             MerC mercury resistance protein
  ------ inclusion threshold ------
      0.023   14.6   0.2        8.9    6.3   0.0    2.2  2  SLATT_1          SMODS and SLOG-associating 2TM effector doma
      0.074   13.0   7.8        2.9    7.8   0.1    3.3  3  Colicin_V        Colicin V production protein
       0.97    9.4   4.4        2.2    8.2   2.7    2.1  2  RseC_MucC        Positive regulator of sigma(E), RseC/MucC
        1.1    8.4   9.4       0.15   11.2   4.8    1.8  2  Choline_transpo  Plasma-membrane choline transporter
        5.2    7.5  11.1       0.61   10.5   5.0    2.2  2  CPBP             CPBP intramembrane metalloprotease
        5.4    6.6   7.9         85    2.7   0.0    2.4  2  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   3.8     0.069   1.6e+02      83     129 ..      60     116 ..      21     118 .. 0.75
   2 !   79.4   0.3   8.7e-26     2e-22       3     129 ..     106     249 ..     104     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.069
        PAP2  83 g..........lvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayr 129
                             + ++++++ l++ v+++ + ++ H+++ +l   ++G++la++a+ 
  CCD24059.1  60 PyalnqrvsdtMLFVYTLVIPLIAIVIMTLILAHPHHRWFLLYISVLGLFLAWFATS 116
                 055555555556677888889999999999999999999999999********9986 PP

  == domain 2  score: 79.4 bits;  conditional E-value: 8.7e-26
        PAP2   3 lalllalalaalltsvlKdlvgrpRPfflaeetkldt.qvstletses..........keakesfPSgHsafafalalllalllrrkrkkig......l 84 
                 l l la +++ l+t+++K+++gr+RP+fl+++++  +  v++l+t ++           ++++  PSgHs+ +fa++ +l+l+ +    + +      +
  CCD24059.1 106 LGLFLAWFATSLFTNFIKNWIGRLRPDFLDRCQPKPGlPVDMLFTASEvcttdnkeilLDGFRTTPSGHSSESFAGLGYLYLWTCGQLLTENkemgywR 204
                 56777778888889999***************9865514566666666******96666666666********************99999889****** PP

        PAP2  85 vllalillllavlvalsRlylgvHflsDvlaGlliGialaalayr 129
                 +l+al++ll a l+alsR  +++H++ Dvl G ++G+++a++ yr
  CCD24059.1 205 KLVALLPLLGASLIALSRTQDYRHHFVDVLLGSIFGYVVAYFNYR 249
                 ****************************************98776 PP

>> MerC  MerC mercury resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   2.5e-06    0.0056      33      87 ..      68     121 ..      55     168 .. 0.84
   2 ?    2.7   0.0     0.077   1.7e+02      22      60 ..     207     250 ..     202     254 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.5e-06
        MerC  33 lasellhqvllilvvaigllalvvgyrrhrktsvlvlgalGllillvalflgtea 87 
                 ++ +l+  +l+i  +ai +++l+++ + h+++ +l++ +lGl++ ++a+ l t+ 
  CCD24059.1  68 SDTMLFVYTLVIPLIAIVIMTLILA-HPHHRWFLLYISVLGLFLAWFATSLFTNF 121
                 567889999999************9.66888****************99988443 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.077
        MerC  22 lallpllglsfla.sel....lhqvllilvvaigllalvvgyrr 60 
                 +allpllg+s +a s       h v ++l+ ++g +  +++yrr
  CCD24059.1 207 VALLPLLGASLIAlSRTqdyrHHFVDVLLGSIFGYVVAYFNYRR 250
                 55666666665332333333455666666677777777777765 PP

>> SLATT_1  SMODS and SLOG-associating 2TM effector domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.5    0.0054        12      22      74 ..      67     118 ..      59     125 .. 0.81
   2 ?    6.3   0.0     0.004       8.9      23      73 ..     199     250 ..     192     255 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0054
     SLATT_1  22 raakrwrlllillellalllaalrafgelsvdlvgvlaavaaallaWlelkqy 74 
                  + +++++ ++++ l+a+++++l  +   +  ++ + ++v + +laW++++ +
  CCD24059.1  67 VSDTMLFVYTLVIPLIAIVIMTLILAHPHH-RWFLLYISVLGLFLAWFATSLF 118
                 556789999************999555444.59**************998655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.004
     SLATT_1  23 aakrwrlllillellalllaalrafgelsvdlvgvl.aavaaallaWlelkq 73 
                 +   wr l++ll ll++ l+al+ ++++  ++v+vl  ++ + ++a++++++
  CCD24059.1 199 EMGYWRKLVALLPLLGASLIALSRTQDYRHHFVDVLlGSIFGYVVAYFNYRR 250
                 55679******************99999998888761577888888888877 PP

>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   1.1     0.096   2.1e+02      39      82 ..      40      91 ..      26     100 .. 0.70
   2 ?    7.8   0.1    0.0013       2.9      26      51 ..     103     128 ..      98     195 .. 0.84
   3 ?    6.2   0.1    0.0041       9.1      84     109 ..     222     246 ..     203     247 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.096
   Colicin_V 39 sllypslaellae........lilspalaaiiaflllfllvllivsllgall 82
                ++++++++ ++          + l++++   + f+ ++++ l+++ ++  +l
  CCD24059.1 40 VYYQEPFQRQFYLndltishpYALNQRVSDTMLFVYTLVIPLIAIVIMTLIL 91
                4678888888888889877776667777777777777777777776666655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0013
   Colicin_V  26 lsllgwvvafvvasllypslaellae 51 
                 +s+lg+++a++++sl+ + + ++++ 
  CCD24059.1 103 ISVLGLFLAWFATSLFTNFIKNWIGR 128
                 899********************998 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0041
   Colicin_V  84 klvsktglglldrllGaifGllkgll 109
                 + ++  +++ +d llG ifG + +++
  CCD24059.1 222 R-TQDYRHHFVDVLLGSIFGYVVAYF 246
                 2.478999**************9986 PP

>> RseC_MucC  Positive regulator of sigma(E), RseC/MucC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   2.7   0.00098       2.2      63     118 ..      67     122 ..      63     126 .. 0.83
   2 ?   -0.5   0.0      0.49   1.1e+03      72     110 ..     209     247 ..     204     261 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00098
   RseC_MucC  63 llkaallvY..llPllllilgallgsallgssellaalgallglvlgflivrllskrl 118
                 +  ++l+vY  ++Pl+++++++l+      ++ ++ + +++lgl+l+++   l+++ +
  CCD24059.1  67 VSDTMLFVYtlVIPLIAIVIMTLILAHP--HHRWFLLYISVLGLFLAWFATSLFTNFI 122
                 5566777774468*****9999999998..7******************999998765 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.49
   RseC_MucC  72 llPllllilgallgsallgssellaalgallglvlgfli 110
                 llPll+  l al  ++   ++ + ++lg+++g v++++ 
  CCD24059.1 209 LLPLLGASLIALSRTQDYRHHFVDVLLGSIFGYVVAYFN 247
                 566666655555544443333333445555555555554 PP

>> Choline_transpo  Plasma-membrane choline transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.8   6.7e-05      0.15     245     311 ..      61     123 ..      42     127 .. 0.71
   2 ?   -2.1   0.0      0.77   1.7e+03     273     303 ..     218     244 ..     204     247 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.7e-05
  Choline_transpo 245 vavldsvvdfvlflgkllialltgliaylllkatltnpeelnsplvpllvvfiiayliasiflsvye 311
                      +a+++ v+d++lf+++l+i l++ +i  l+l++  +      + l++++++ ++a++ +s+f++ ++
       CCD24059.1  61 YALNQRVSDTMLFVYTLVIPLIAIVIMTLILAHPHH----RWFLLYISVLGLFLAWFATSLFTNFIK 123
                      578999*************99998887788885322....234444555555555555555555554 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.77
  Choline_transpo 273 lllkatltnpeelnsplvpllvvfiiaylia 303
                      + l++t      + + +v +l++ i++y++a
       CCD24059.1 218 IALSRTQD----YRHHFVDVLLGSIFGYVVA 244
                      33343323....5556667777777777776 PP

>> CPBP  CPBP intramembrane metalloprotease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.0   0.00027      0.61       7      73 ..      30     114 ..      24     123 .. 0.72
   2 ?    0.1   0.2      0.49   1.1e+03      56      75 ..     230     249 ..     188     255 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHH.HHHHHHTTCHHHH........HHHH.S-.............HHHHHHHHHHHHHCSGGGHHHHHHHHHHHHHHHHHH CS
        CPBP   7 vfllalllapl.lEEllfRglllql........lqergss.............tlailissilFglaHlpngpsvllaalaGlvlgyly 73 
                 ++++++++ p+ + E + R + l+         l+    +             +  i+i  +   laH ++ +++l+++++Gl+l++ +
  CCD24059.1  30 LLIFMIISYPVyYQEPFQRQFYLNDltishpyaLN----QrvsdtmlfvytlvIPLIAIVIMTLILAHPHHRWFLLYISVLGLFLAWFA 114
                 44555555555467888888877773333333333....14445788888888778888888889*********************976 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.49
                 HHHHHHHHHHHHHHHHHHHH CS
        CPBP  56 gpsvllaalaGlvlgylylk 75 
                 ++ vll +++G v++y  ++
  CCD24059.1 230 FVDVLLGSIFGYVVAYFNYR 249
                 33466666666666666555 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   8.6       0.2   4.4e+02       6      51 ..      75     117 ..      71     122 .. 0.77
   2 ?    2.7   0.0     0.038        85       9      59 ..     206     258 ..     199     275 .. 0.60

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.2
     DUF4131   6 alvllalllllllllllllrrrprrrvllllllllllallgfalra 51 
                 + +++ l+++++++l+l     p+ r++ll + +l l+l++fa + 
  CCD24059.1  75 YTLVIPLIAIVIMTLILA---HPHHRWFLLYISVLGLFLAWFATSL 117
                 567777788888888777...6999999999999999999998765 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.038
     DUF4131   9 llalllllllllllllrr..rprrrvllllllllllallgfalrapqpnandl 59 
                 l+all ll + l++l+r    ++  v +ll+ ++  ++++f +r   p+ nd 
  CCD24059.1 206 LVALLPLLGASLIALSRTqdYRHHFVDVLLGSIFGYVVAYFNYRRNFPPINDP 258
                 34444444444444443322455556778888888888888888777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2175.44
//
Query:       CCD24060.1  [L=1656]
Description: hypothetical protein NDAI_0C04000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-89  299.7   4.7    1.9e-89  299.7   4.7    2.8  3  HGTP_anticodon2  Anticodon binding domain of tRNAs
    1.2e-67  228.1   7.7    8.9e-43  146.5   0.1    4.6  4  Pkinase          Protein kinase domain
    3.6e-36  124.8   0.1      5e-20   71.9   0.0    3.6  3  Pkinase_Tyr      Protein tyrosine kinase
    1.3e-18   67.3   2.9    3.6e-18   65.9   1.4    2.7  2  RWD              RWD domain
    1.1e-12   47.8   0.0    2.2e-12   46.9   0.0    1.4  1  tRNA-synt_His    Histidyl-tRNA synthetase
     0.0093   15.9   0.0       0.02   14.8   0.0    1.4  1  APH              Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.057   13.0   6.9        1.4    8.5   0.0    3.8  4  FTA2             Kinetochore Sim4 complex subunit FTA2
       0.51   10.9   4.7        9.8    6.8   5.6    2.7  2  Ribosomal_L6e    Ribosomal protein L6e
       0.78    9.9   4.4          1    9.6   0.0    3.2  3  HGTP_anticodon   Anticodon binding domain


Domain annotation for each model (and alignments):
>> HGTP_anticodon2  Anticodon binding domain of tRNAs
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   3.8       6.6   1.3e+04     122     178 ..     143     168 ..      95     190 .. 0.45
   2 ?   -1.9   1.2      0.98   1.9e+03      98     138 ..     655     693 ..     645     712 .. 0.35
   3 !  299.7   4.7   9.6e-93   1.9e-89       1     263 []    1386    1654 ..    1386    1654 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 6.6
  HGTP_anticodon2 122 essqkedeass...esseeleealaskeerqkevrvlvaatrskksnkrekveqddAqea 178
                      +  ++e++ ++   e+++++e                                q   + +
       CCD24060.1 143 RIREAEAKLEKeekERKQKIE--------------------------------Q--EKVS 168
                      111111111110011111111................................1..1111 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.98
  HGTP_anticodon2  98 wlkqeirerekereesaksskssaessqkedeass.esseel 138
                      ++ + ++e +++++  + s++   +++++ede+s+ ++s+ +
       CCD24060.1 655 YYAAWLEEDTQNDNAISLSDS---DDHEEEDETSDdSESDIF 693
                      555555444422222222221...111112222211111111 PP

  == domain 3  score: 299.7 bits;  conditional E-value: 9.6e-93
  HGTP_anticodon2    1 WkpkRcDVlVasfdksiLrtsgvellqeLWahnIsAdlaldasksleelvskarddgvswiviikqqn....kskskekplkvkslekkedv 88  
                       Wkp+RcDVl++sf+ks+L+t+gv+ll++LW+ +I+Ad+ l+++++++++v++a++dgv+wi++ikqq+    ++k+k+kplkvk+++++ d+
       CCD24060.1 1386 WKPSRCDVLISSFSKSLLDTVGVSLLNKLWKMGIRADF-LRTCYTVDDVVTRAQQDGVEWIILIKQQTysmsSHKRKYKPLKVKRVSSNGDI 1476
                       **************************************.****************************9************************ PP

  HGTP_anticodon2   89 dldldelvswlkqeirere.kereesaksskssaessqkedeass.esseeleealaskeerqkevrvlvaatrskksnkrekveq.ddAqe 177 
                       dld+de++ +++qe+++++ ++++ s +++   +++s ++de+ss + s++ +e++++++++qk+ +++++atr+kk++krek+ + d+A++
       CCD24060.1 1477 DLDIDEFLMLYQQETSSSTlINDSLSIDDK---HDDSGNWDENSSaSGSQDEKEETSNTTTNQKVTYIPNMATRAKKASKREKWVYeDAARN 1565
                       ******************977777766655...5677788888886777777788888999*************************99**** PP

  HGTP_anticodon2  178 aaaelvksllngpiaaidt.rdevlemisetsLsdkdeW.rkviqs.vntaersyateihnaLskeaakgkkwailynfrtgkcilydL 263 
                       a++ ++ sl+++p++++d+ rde+le+is+tsL++k+eW rkv++s +n+++rs+at+i+n+Lskea kg+kwail++++tgk++++dL
       CCD24060.1 1566 ASNIIIGSLSSAPVFTVDAlRDETLEIISITSLAQKEEWlRKVFGSgNNSTPRSFATNIYNNLSKEAGKGTKWAILHCHKTGKSCVIDL 1654
                       **********************************************99****************************************9 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.4       1.2   2.4e+03     212     252 ..     140     184 ..     120     193 .. 0.58
   2 !   41.8   0.0     4e-14   8.1e-11      43     263 ..     302     525 ..     291     526 .. 0.78
   3 !   40.8   0.0   7.9e-14   1.6e-10       1      71 [.     596     663 ..     596     673 .. 0.91
   4 !  146.5   0.1   4.5e-46   8.9e-43      67     264 .]     777     980 ..     743     980 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
                 THHHHHHHCT....SHH...HHHTTS-HHHHHHHHHHT-SSGCCS CS
     Pkinase 212 qlekilkilg....etkeklpeaseiseeakdllkkllkkdpkkR 252
                 +l++i++       e+ke  ++ ++ + + ++l+++++kk+++kR
  CCD24060.1 140 RLQRIREAEAklekEEKERKQKIEQEKVSEQKLIDEIVKKEMEKR 184
                 233333333321123333333333335566899999999999999 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 4e-14
                 HHHHHHHHHHHHHSCTTB--EEEEEEE.........SSEEEEEEE--TTEB.HHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEE CS
     Pkinase  43 kkvlrEikilkklkhpnivrlyevfee.........kdelylvleyvegge.ladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLi 131
                 +++ + ++ l k+kh+n+ rly++  e           ++ l++ey +    + +l++  g ++ ++a+ ++ +ilegle lH+ gi+Hr +  + + +
  CCD24060.1 302 SNLEKVLESLLKVKHDNVNRLYGYTVErmgknntnfVWKIRLLTEYSSSSFlIGELIQSVGFINLATARVWMIRILEGLEALHKIGIFHRCVCLQTVTM 400
                 4555567789999**********999999988644444455999**9977745678888888*****************************99999999 PP

                 ETTTE.....EEE-SGTTSEESSSSCS...............BCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHH CS
     Pkinase 132 dekge.....lKitDFGlakelesssk...............ltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkppfsgekgkekvek 208
                 +++ +      K++        +ss                  + +   s +++PE    ++n+y + +D+W +Gv+++++++g +   +         
  CCD24060.1 401 SKDSDfgttiPKLI--------HSSYGygiinmlarypnrngPRIELPNSSWIPPECEnnTTNKYNRMTDIWQAGVLFMQIINGVETTID--------- 482
                 95544455554444........3333255555555555577788889999*******98778**********************998882......... PP

                 HHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 209 eldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpy 263
                  +              +++ + ++++e++ dll+k+ + dpkkRl+  ell  ++
  CCD24060.1 483 -FGS-----------PQEFLNSTDMDESLYDLLSKMTATDPKKRLGTLELLPMKF 525
                 .222...........12344557789********************999998777 PP

  == domain 3  score: 40.8 bits;  conditional E-value: 7.9e-14
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekd 71 
                 +e++  lG+G+fG+V+ka+++ +++ +A+Kk ++ ++k    +++l+E+ +l++l+h+++vr+y ++ e+d
  CCD24060.1 596 FEEIAVLGKGAFGQVVKARNALDSRYYAIKKYRHTEEKL---STILSEVMLLASLNHQYVVRYYAAWLEED 663
                 578899**************************9998876...569********************998865 PP

  == domain 4  score: 146.5 bits;  conditional E-value: 4.5e-46
                 EEESSEEEEEEE--TTEBHHHHHH.HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS........... CS
     Pkinase  67 feekdelylvleyveggeladlle.rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk........... 153
                  ++k++l++ +ey+e+ +l dl++ ++ s + +e  ++++qile+l+y+Hs+giiHrDlKp Ni+ide++++Ki+DFGlak++++s +           
  CCD24060.1 777 AKRKSTLFIQMEYCENRTLYDLIHaENLSKQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSADilrmdsqsavg 875
                 567999******************666668899999**************************************************99*********** PP

                 ....BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT..SHH...HHHTTS-HHHHHHHHHHT CS
     Pkinase 154 ....ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg..etkeklpeaseiseeakdllkkll 245
                     lts +gt  Y+A Evl ++ +y +k+D++slG+i++e++    pfs  +g e         ++ilk l+   +++ ++ +++  ++ k+++k ll
  CCD24060.1 876 ssenLTSAIGTALYVATEVLnGKGHYNEKIDMYSLGIIFFEMV---YPFS--TGME--------RVNILKDLRlpSVDFPSDFDYTKMKTEKKIIKLLL 961
                 ********************555666****************5...6999..2222........23444445555678889999999************ PP

                 -SSGCCSTTHHHHHTSGGG CS
     Pkinase 246 kkdpkkRltaeellqhpyl 264
                 + dp++R++a++ll++ +l
  CCD24060.1 962 DHDPTRRPGARKLLDSGWL 980
                 **************99996 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   3.5e-09   6.9e-06      40     219 ..     296     494 ..     290     519 .. 0.78
   2 !   22.9   0.0   2.1e-08   4.3e-05       5      73 ..     600     662 ..     596     669 .. 0.87
   3 !   71.9   0.0   2.5e-23     5e-20      72     252 ..     779     971 ..     769     977 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 3.5e-09
                  SSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE....SSSS.......EEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEE CS
  Pkinase_Tyr  40 ateeekeelleeakimkklkhpnivkllgvct....keep.......llivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvH 126
                  + ++e ++l + ++ + k+kh+n+ +l+g  +    k  +       + ++tey ++  L   L ++    ++l +   +++ + +G+e L++  + H
   CCD24060.1 296 NGKKEISNLEKVLESLLKVKHDNVNRLYGYTVermgK--NntnfvwkIRLLTEYSSSSFLIGELIQS-VGFINLATARVWMIRILEGLEALHKIGIFH 390
                  556778888899999***************9976542..14578888999**************999.99**************************** PP

                  ST-SGGGEEEEE........TTEEEE-.STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHH CS
  Pkinase_Tyr 127 rdlaarNvLlse........nkvvkis.DfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllwEiftlgespypglknee 213
                  r ++ + v +s+         k++  s  +G+ + + +  + +  + +  +  W++pE+ ++++  ++  +D+W  Gvl + i++  e+++   +++e
   CCD24060.1 391 RCVCLQTVTMSKdsdfgttiPKLIHSSyGYGIINMLARYPNRNGPRIELPNSSWIPPECENNTTnkYNRMTDIWQAGVLFMQIINGVETTIDFGSPQE 488
                  ***********988887665333333325677777744443333333444578******9876555******************96555555558888 PP

                  HHHHHH CS
  Pkinase_Tyr 214 vleklk 219
                  +l+  +
   CCD24060.1 489 FLNSTD 494
                  777654 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 2.1e-08
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESS CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctke 73 
                    lG+GafG+Vv+++       ++   a+K+   ++tee+ + +l+e+ ++ +l+h+ +v+++++ ++e
   CCD24060.1 600 AVLGKGAFGQVVKARNA----LDSRYYAIKKY--RHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLEE 662
                  68************999....778899***99..5666778**********************998865 PP

  == domain 3  score: 71.9 bits;  conditional E-value: 2.5e-23
                  SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.......... CS
  Pkinase_Tyr  72 keepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey.......... 159
                  ++++l+i +ey+++ +L + ++++ + + + ++  ++  q+ ++++y++s+ ++Hrdl   N++++e++ vki+DfGLa++++++ +           
   CCD24060.1 779 RKSTLFIQMEYCENRTLYDLIHAE-NLSKQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSADIlrmdsqsavg 875
                  45668899***************9.88889999***********************************************996654443332222222 PP

                  ..EETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH...HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS-- CS
  Pkinase_Tyr 160 ..vkkeeaklpvkWmapEslkekk.ftsksDvWsfGvllwEiftlgespypglkneevlekl...kegkrlekpekcpeelyelmkkcweedpeeRpt 251
                    ++ ++a     ++a E+l+ k  +++k D++s G++ +E++   ++ +   +  ++l+ l   + +   +   +  ++ ++++k  +++dp++Rp 
   CCD24060.1 876 ssENLTSAIGTALYVATEVLNGKGhYNEKIDMYSLGIIFFEMVYPFSTGM---ERVNILKDLrlpSVDFPSDFDYTKMKTEKKIIKLLLDHDPTRRPG 970
                  111122333456799*****97644*****************98444333...344444433111333333333334444456666666666666665 PP

                  H CS
  Pkinase_Tyr 252 f 252
                   
   CCD24060.1 971 A 971
                  5 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   1.4   1.8e-21   3.6e-18       2     115 ..      13     123 ..      12     124 .. 0.93
   2 ?   -2.6   0.0       3.3   6.5e+03      63      97 ..     427     462 ..     422     478 .. 0.75

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 1.8e-21
                 HHHHHHHHHHHHSTTTCCCCH..T--EE--S-EEEEEEECECCCC....TT-CEEEEEEEEE-SSTTSS--EEEEEECCSS-HHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD   2 eqeqEleaLesIypdefevie..nenysikleikikldededeedsefeekkkpslkleiklpeeYPeeaPiislsstenlpkeqvksleekleelaee 98 
                  q++Elea++sIy+d+f+++   ++++ ++ +i ++++  + ++     e  + sl+l++ +++ YP++ P+i++ + +n+ ++q+k+l+e  +++ e+
  CCD24060.1  13 IQSNELEAMRSIYMDDFVDLTkkKSKWDKQPQIIFEVNVCSTDK-----EPVESSLTLHFAMTPMYPHTMPEIKFLNVKNVLDYQLKQLSESFKQIHES 106
                 79***************666666899999999*******99985.....6899********************************************** PP

                 TTTS--CHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
         RWD  99 nlgepvifalidwlken 115
                  +g++ if++i++++e 
  CCD24060.1 107 AKGQEYIFEVISLVRER 123
                 **************996 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.3
                 SSTT.SS--EEEEEECCSS-HHHHHHHHHHHHHHHH CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD  63 eeYP.eeaPiislsstenlpkeqvksleekleelae 97 
                   YP    P i+l ++ ++p e+ ++ ++k +++ +
  CCD24060.1 427 ARYPnRNGPRIELPNSSWIPPECENNTTNKYNRMTD 462
                 679955569999999888*99999999988887765 PP

>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.1e-15   2.2e-12      52     309 ..    1074    1355 ..    1065    1356 .. 0.75

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.1e-15
                     HHS-EEE-TTSSEEEE-SSSHHHHHHHHHHHHH.TSS-EEEEEEEEEEESS-SS..TT--CCEEEEEEEEESS-SHHH...HHHHHHHHHHHHH CS
  tRNA-synt_His   52 dqtfklvDqsgrllglRaDiTpqvaRiaahrln.rerplRlcYaGsvlrtrpdg..lgrsreplQvGaEliGaeglea...dlEvlsllleale 139 
                     ++++ + D+ g +l l  D+T  +aR+ +++ n   +  Rl    +v+r  +++    + r++  +   +i  ++ ++   d+E ++++ e+l 
     CCD24060.1 1074 QNVYEVLDKGGTVLQLQYDLTYPMARYLSKNPNcVAKQFRLQ---HVYRPPTKSnsSLEPRKFGEIDFDIISGSSSDSpfyDAENIKIIDEVLT 1164
                     57999*************************998888888886...5665433331145677888888999998888877779*******99996 PP

                     HHCTS...SSEEEEEEETCHHHHHHHHTT--HHHHHHHHHHHHC....T-HHHHH.HHHHCCTTHHHCCHCC...HCCHCCCHHHHCH.CCHCT CS
  tRNA-synt_His  140 aaagv...kelrldlghvglvralleaaglsesleeallaalar....kdlaelk.elaaeaglkealrellkalelygdaevleeal.ealaa 224 
                       + v   ++  ++++h ++++++++  +++++++  + ++l++    k  +++k el ++ +++++ ++ l++++ + d +  ++ l + +++
     CCD24060.1 1165 -IFPVfekTNTLFVMNHSDILESVFNFSNIDKAQRPLVSRMLSQvgfaKTFKDVKnELKSQLNISSTSLNDLELFDFRVDFDDAKRRLhKLMVD 1257
                     .876655588999**********************99999998633336666665245557788899999999885555555555554045567 PP

                     HHHHHHHHHHHHHHHHHHHHHHH...H-TTEEE-TT--TTTTT--SEEEEEEE.TT.-SS-SEEEEEECTTTGGGT-........--EEEEEEE CS
  tRNA-synt_His  225 apalqaaldeleelaallealak...pevrvtlDlaelrgyeYytGlvFaaya.eg.vgqaiarGGrYdelgaafgr........arpAtGfsl 305 
                     +p l+++ d+l ++ ++l+ l+     ++ v   l+      Y  G++F+a+  +g +++ ia GGrYd l++ f r         + A+Gf l
     CCD24060.1 1258 SPYLRNIDDALSHILKVLNFLKPlevTRNMVISPLSNYNSAFYKGGIMFQAVYdDGmTRNLIAAGGRYDTLISYFARpssgkstnTQRAVGFNL 1351
                     7778888888888888888776533344555555555556668889***976515534469**************8866777776779999988 PP

                     EHHH CS
  tRNA-synt_His  306 dlea 309 
                       e+
     CCD24060.1 1352 AWET 1355
                     7665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     1e-05      0.02     135     205 ..     797     865 ..     778     876 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1e-05
                 CCCGCCTCC.HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHH CS
         APH 135 rllaselld.lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDl 205
                 +l+++e+l   + e ++ +++ l+al     +++++H+Dl+p N+ +d+  +    + Df++a+  ++ +D+
  CCD24060.1 797 DLIHAENLSkQRDEYWRLFRQILEALSY-IHSQGIIHRDLKPMNIFIDESRNVK--IGDFGLAKNVHRSADI 865
                 5556666664444555523333333333.589****************555555..89*****999999998 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   1.1         7   1.4e+04     137     165 ..     152     180 ..     135     189 .. 0.52
   2 ?    0.3   0.0      0.23   4.5e+02     180     214 ..     375     409 ..     370     410 .. 0.87
   3 ?    5.6   0.0    0.0056        11      22      58 ..     594     632 ..     581     668 .. 0.79
   4 ?    8.5   0.0   0.00072       1.4     143     204 ..     781     841 ..     746     856 .. 0.69

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 7
        FTA2 137 akete.drsralgeedgkkrpiraIVKele 165
                 +ke +  ++++++e+ ++++ i  IVK+ e
  CCD24060.1 152 EKEEKeRKQKIEQEKVSEQKLIDEIVKK-E 180
                 2222123445555666666677777776.3 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.23
        FTA2 180 kllrdlkklhklgIvvrDlkeenyidgkLvDlsaa 214
                 ++l+ l+ lhk gI++r +  + +  +k  D++++
  CCD24060.1 375 RILEGLEALHKIGIFHRCVCLQTVTMSKDSDFGTT 409
                 899**************999998888888888876 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0056
        FTA2  22 kdiefleyLgkglhsiVlkvk..irgkeYALKlFrflea 58 
                  d+e + +Lgkg+ ++V+k++   + + YA+K +r+ e+
  CCD24060.1 594 SDFEEIAVLGKGAFGQVVKARnaLDSRYYAIKKYRHTEE 632
                 5889999*************8446889*****8877744 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.00072
        FTA2 143 rsralgeedgkkrpiraIVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 ++ ++++e+ ++r ++ ++   e l++q     + ++++l+ l  +h++gI++rDlk+ n+ 
  CCD24060.1 781 STLFIQMEYCENRTLYDLIHA-ENLSKQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIF 841
                 455556666666666666666.55666677777889*********************98863 PP

>> Ribosomal_L6e  Ribosomal protein L6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.6    0.0049       9.8      46      88 ..     141     185 ..     116     193 .. 0.73
   2 ?   -2.4   0.0       3.5   6.9e+03      34     100 ..    1359    1430 ..    1350    1433 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0049
  Ribosomal_L6e  46 kkk.kkkeeelf.eekkekkelseerkadqkavDkallaaikkek 88 
                     ++ +++e++l  eek+ k+++++e++++qk +D+ + ++++k k
     CCD24060.1 141 LQRiREAEAKLEkEEKERKQKIEQEKVSEQKLIDEIVKKEMEKRK 185
                    333457777787455566699********************9986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.5
  Ribosomal_L6e   34 lndeyFkkekkkkkkkkkeeelfeekkekke.......lseerkadqkavDkallaaikkekllkkYLkskFsL 100 
                     + ++yFk  ++++ k  k + ++++++ + +       +s+  k+  ++v  +ll+++ k    +++L++ +++
     CCD24060.1 1359 IGQNYFKLASRNRLK--KRNRFLKDSAIDWKpsrcdvlISSFSKSLLDTVGVSLLNKLWKMGIRADFLRTCYTV 1430
                     556788877544443..445555333332111223334777788888889999999999999999999888886 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.2       2.1   4.3e+03      72      93 ..     156     178 ..     148     179 .. 0.85
   2 ?   -0.3   0.0       0.6   1.2e+03      29      43 ..    1229    1253 ..    1206    1258 .. 0.67
   3 ?    9.6   0.0   0.00051         1      16      88 ..    1405    1484 ..    1392    1490 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.1
                     EETTTC.EEEEEETTHHHHHHHH CS
  HGTP_anticodon  72 rdrdtr.eqervsldelveklke 93 
                     ++r+ + eqe+vs ++l++++ +
      CCD24060.1 156 KERKQKiEQEKVSEQKLIDEIVK 178
                     56777779***********9976 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.6
                      T..........SEEEEESSSSTHHH CS
  HGTP_anticodon   29 g..........irvelddsnesigk 43  
                                 +rv++dd ++++ k
      CCD24060.1 1229 StslndlelfdFRVDFDDAKRRLHK 1253
                      14444444555*******9999877 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00051
                      HHHHHHHHHHHTTTSEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHH......H.TEEEEEETTTCEEEEEETTHHH CS
  HGTP_anticodon   16 eyakklaeeLraagirvelddsnesigkkireadllgipfavvvGekele......k.gtvtvrdrdtreqervsldelv 88  
                      ++  +l ++L++ gir+++    +++   + +a++ g+ +++ + ++++       k + ++v++  +   + +++de++
      CCD24060.1 1405 TVGVSLLNKLWKMGIRADFLRTCYTVDDVVTRAQQDGVEWIILIKQQTYSmsshkrKyKPLKVKRVSSNGDIDLDIDEFL 1484
                      55678899****************************************98777777557788888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1874  (0.104523); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.14u 0.30s 00:00:01.44 Elapsed: 00:00:00.46
# Mc/sec: 10709.64
//
Query:       CCD24061.1  [L=370]
Description: hypothetical protein NDAI_0C04010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.2e-18   65.0   2.4      1e-17   64.7   0.2    2.4  2  CTD_bind    RNA polymerase II-binding domain.
     0.0013   18.7   0.7     0.0013   18.7   0.7    2.0  2  CTK3        CTD kinase subunit gamma CTK3


Domain annotation for each model (and alignments):
>> CTD_bind  RNA polymerase II-binding domain.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.2   1.1e-21     1e-17       1      63 []      57     119 ..      57     119 .. 0.98
   2 ?   -1.2   0.2      0.42   3.7e+03      49      49 ..     194     194 ..     150     222 .. 0.46

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 1.1e-21
    CTD_bind   1 kLnllYLaNdvlqnskrkqkdefapaFapvlpeafadaykkapekikkklkrllniWeernvf 63 
                 kL  lYLaN+v+q++k++q  +f+++F++v  ea+ ++y++ p+++kkk+kr+ niW+er++f
  CCD24061.1  57 KLLALYLANHVVQQAKSQQITQFQESFGKVSAEAIGSIYSTFPSDLKKKVKRVTNIWKERRIF 119
                 8999**********************************************************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.42
    CTD_bind  49 k 49 
                 k
  CCD24061.1 194 K 194
                 1 PP

>> CTK3  CTD kinase subunit gamma CTK3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.7   1.5e-07    0.0013       7     121 ..       5     118 ..       2     120 .. 0.77
   2 ?   -1.1   0.1       0.2   1.8e+03      81     115 ..     162     198 ..     147     214 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.5e-07
                 HHHHHHHHTT--SSGGGTHHHHHHHHHTGGGHHHHHHHHHHHHHHS-HHHHHHH..HHHHHHHHHHHHHTT--S..THHHHHHHTHHHHHHHHS-HHHH CS
        CTK3   7 rsqFsqlLrkLtasvqslqkaaqfAlknkdkeedlfscileqlesadlNtrani..lyfidllleeslkegqsekspYveslkrdilklvdsvvPgsga 103
                 ++qF++ L++L+  ++s++ aa++ + ++ ++ ++ +c    + ++++Ntr ++  ly+ +++++++  ++ +   ++ es+ +   + + s+     +
  CCD24061.1   5 TQQFVNKLNNLEDTQESISSAAKWLVSQYREASEVANCWKGYMLKSSINTRRKLlaLYLANHVVQQAKSQQIT---QFQESFGKVSAEAIGSIYSTFPS 100
                 78************************************************98872257778888777665554...56666666666666666644444 PP

                 HHHHHHHHHHHHHHHTTS CS
        CTK3 104 aNlksvrkilkslklksl 121
                    k+v+++++ +k++++
  CCD24061.1 101 DLKKKVKRVTNIWKERRI 118
                 444567777777777776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.2
                 THHHHHHHTHHHHHHHHS-..HHHHHHHHHHHHHHHH CS
        CTK3  81 pYveslkrdilklvdsvvP..gsgaaNlksvrkilks 115
                   ++ +k    k v+++ P     + N k+v ki + 
  CCD24061.1 162 HHIQAVKARFDKSVQELDPssMVYEENYKTVSKIGQL 198
                 6777888888888888888544456777777555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2154  (0.120141); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2677.86
//
Query:       CCD24062.1  [L=1063]
Description: hypothetical protein NDAI_0C04020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-26   91.6   0.0    1.2e-25   90.3   0.0    1.7  1  DEAD        DEAD/DEAH box helicase
    1.7e-20   73.6   0.2    4.5e-20   72.2   0.2    1.8  1  DUF1998     Domain of unknown function (DUF1998)
    1.7e-14   54.1   0.1      5e-13   49.4   0.1    2.9  2  Helicase_C  Helicase conserved C-terminal domain
    5.3e-08   33.0   0.0    1.1e-07   32.0   0.0    1.6  1  ResIII      Type III restriction enzyme, res subunit
    0.00048   20.5   0.1     0.0011   19.2   0.1    1.7  1  CDT1        DNA replication factor CDT1 like


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.0   3.3e-29   1.2e-25       2     173 ..     291     467 ..     290     470 .. 0.86

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 3.3e-29
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST.SEEEEE..ETTSSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx..xxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyid.lrvlli..iggvaardqlskldng 97 
                 + Qa+ai++i  g++v++   T sGK+l++++ +++i+++   +++  ++++ Pt++La+++ + ++ ++++i  lr++ +  + g+++++++s+++++
  CCD24062.1 291 SHQAHAINAIHAGQNVIITTSTSSGKSLIYQLSAIDILLK---DPEATCMYIFPTKALAQDQKRAFEDLISKIPeLREMRVdtYDGDTEQHERSVIRKN 386
                 58************************************75...9999************************96558888554588************** PP

                 CSEEEEEHHHHHHHH....HCTSSH....CTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHC.TTST.TTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxxx....xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddll....stgkln....lsqvrflVlDEadrlldqgfsdfinrilnqlpqit.cdgk.lqrqvivlSATlpkdv 173
                 +++++++p++++  +    +    n    l +++++V+DE + +    f+  +  ++++l + + c  + ++ ++i +SATl + +
  CCD24062.1 387 ARVIFTNPDMIHASIlpnhT----NwrhfLYNLKIVVVDELHVYRGL-FGSNVALVMRRLLRLSkCFYEnKSIRFISCSATLREPI 467
                 *************6646542....333459****************9.***99999999877651545556677********8766 PP

>> DUF1998  Domain of unknown function (DUF1998)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.2   1.3e-23   4.5e-20       1      83 []     898     987 ..     898     987 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 1.3e-23
     DUF1998   1 lehalinalplflqcdesdlgteckapedep......rkrpariliydavp..gGaGiaekaaelleellraalelieecdCeeaGCpaCl 83 
                 ++ha++ ++p f+ +  ++++teckape+e+      r rpar+++yd+++   G+G+++ka+e+++++l+a+le+i+ec+Ce +GCp+C+
  CCD24062.1 898 AQHAIMGLFPRFIVSGVDEIQTECKAPEKEFaerqtkRIRPARLIFYDSKGgeYGSGLSTKAFEHVDDILEATLERIDECTCE-DGCPDCV 987
                 69***********************999988999999*************95569999************************8.******8 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.14   5.1e+02      20      58 ..     337     383 ..     318     395 .. 0.64
   2 !   49.4   0.1   1.4e-16     5e-13       6     110 ..     520     630 ..     514     631 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.14
                 EEEESSHHHHHH........HHHHHHHTTSTEEEESTTSTHHHHHHH CS
  Helicase_C  20 lifvntidrlek........vklllekkgikvavlhgelpqnereei 58 
                 + + +t+  +++        ++ + e ++++v +++g+++q er  i
  CCD24062.1 337 MYIFPTKALAQDqkrafedlISKIPELREMRVDTYDGDTEQHERSVI 383
                 44444444222223343223444456669**************9866 PP

  == domain 2  score: 49.4 bits;  conditional E-value: 1.4e-16
                 HHHHHHHTTTTSEEEEEESSHHHHHH....HHHH.....HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C   6 llellkleeeggkilifvntidrlek....vkll.....lekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlpr 95 
                 l+el+    ++ +++ f+  ++ +e     v+ +     +e   + v  + g  ++++r++i +++ +g+ + +i+t+++e Gidi +++ V ++++p 
  CCD24062.1 520 LVELI---LRNIRTIAFCFVRRVCELlmkeVRNIlsdmgREDLLVDVMSYRGGYSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPL 615
                 44454...67778888888888774443342222344333333799***************************************************** PP

                 SHHHHHHHHTTSSST CS
  Helicase_C  96 nvtsyiqriGRtgRa 110
                 ++++++q++GR+gR 
  CCD24062.1 616 SMANFHQQSGRAGRR 630
                 **************6 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   3.1e-11   1.1e-07       4     147 ..     289     429 ..     286     465 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 3.1e-11
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B--.. CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke...igkkvsgdkkka.k 97 
                 ++++Q++ai+++         ++++i   T +GK+l++ +++i+ llk  +e  ++ + p+k+l +  +++f++++s+  +        ++gd++++ +
  CCD24062.1 289 FYSHQAHAINAIH------AGQNVIITTSTSSGKSLIYqLSAIDILLKD-PEATCMYIFPTKALAQDQKRAFEDLISKIPELremRVDTYDGDTEQHeR 380
                 7899******996......5578***************88888888885.778*********************9998654465666668888888867 PP

                 ......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS. CS
      ResIII  98 ekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak 147
                 +  ++n+++++t+ ++++a++   + ++ +    + +++++DE H +++ 
  CCD24062.1 381 SVIRKNARVIFTNPDMIHASI-LPNHTNWRHFLYNLKIVVVDELHVYRGL 429
                 77899****************.4444444444445559*******88774 PP

>> CDT1  DNA replication factor CDT1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   3.2e-07    0.0011       4      66 ..      20      89 ..      19     186 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.2e-07
        CDT1  4 kYevLlelFkaldtivsmlenrketi.tfakvkkaVermsrksfeekhLaqiktvyPeayklk......q 66
                +Y+ +  lF +l+ti  +l +rk+ i tf+ + + + + +++  +e +La+i+ ++P    ++      +
  CCD24062.1 20 EYKNIRSLFFRLNTIYTFLICRKHVIpTFKTLTEPISAALKRPVTELDLAKIAVLMPRGCVFRyidenqI 89
                6999*******************98669******************************999994433331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1063 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.80u 0.28s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 7126.45
//
Query:       CCD24063.1  [L=611]
Description: hypothetical protein NDAI_0C04030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-61  206.8   2.2    2.8e-61  205.7   2.2    1.7  1  SRX          SRX, signal recognition particle receptor alpha 
    1.2e-47  162.1   0.1    1.3e-28   99.9   0.1    2.4  2  SRP54        SRP54-type protein, GTPase domain
    1.5e-07   31.6   0.4    5.1e-07   29.8   0.4    2.0  1  SRP54_N      SRP54-type protein, helical bundle domain
    1.5e-05   25.1   0.5    5.7e-05   23.2   0.1    2.0  3  SRP-alpha_N  Signal recognition particle, alpha subunit, N-te
    0.00058   19.8   0.2     0.0073   16.2   0.2    2.6  1  AAA_31       AAA domain
    0.00061   18.9   0.0     0.0014   17.6   0.0    1.7  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
    0.00099   19.2   0.2     0.0055   16.7   0.0    2.3  2  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
     0.0012   18.4   0.0      0.003   17.2   0.0    1.6  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
     0.0018   17.5   0.0       0.17   11.0   0.0    2.6  2  ArsA_ATPase  Anion-transporting ATPase
     0.0073   15.8   0.0       0.02   14.3   0.0    1.8  1  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
  ------ inclusion threshold ------
      0.021   14.6   0.0      0.041   13.6   0.0    1.4  1  AAA_30       AAA domain
      0.043   13.5   0.0       0.14   11.8   0.0    1.9  1  AAA_24       AAA domain
      0.054   13.3   0.0       0.18   11.6   0.0    1.9  1  Csm1_B       Csm1 subunit domain B
      0.096   13.0   0.0       0.33   11.2   0.0    2.0  1  AAA_22       AAA domain
        1.6    8.8   8.3        1.3    9.0   0.3    3.5  4  DUF87        Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> SRX  SRX, signal recognition particle receptor alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.7   2.2   2.4e-64   2.8e-61       1     148 []       1     150 [.       1     150 [. 0.98

  Alignments for each domain:
  == domain 1  score: 205.7 bits;  conditional E-value: 2.4e-64
                 ---EEEEE-TT-BEEEEEETTS----HHHHHHHHHHHHHS---GGGEE..--EEEEE--------......---EEEEEEETTTTEEEEEEESS--HHH CS
         SRX   1 mfdqlaiftpqGevlyqynclgkkfaeaqinafisklitspvkkkedv..skfkllsvsseskss......ksfsalfhvskqPelyfvvtyaeqsleL 91 
                 mf+qlaift qG +lyqync+gkkf+e+qinafisklit+p+++++++   kf++l+v+++s+ s      +sf+++f+++kqPe+yfv+tyaeq++eL
  CCD24063.1   1 MFEQLAIFTLQGIILYQYNCQGKKFSEHQINAFISKLITAPATRDTTTagGKFTILNVTNDSTLSttnaysRSFCSMFYKTKQPEIYFVITYAEQTIEL 99 
                 9********************************************999999*********99988899999**************************** PP

                 HHHHHHHHHHHHHHHHHTTHHHHHHHHTSSSTT--TTS---TTTTTHHHHHHHHT-- CS
         SRX  92 nkeaeevlklalkLWdsLelnesilknlkgkgkknehnyvdilegleedlekfdkyl 148
                 +keae++l+la+kLW+sLe+n+si++nl      n+++++dil+g+++ ++kfd+y+
  CCD24063.1 100 DKEAEKTLDLATKLWNSLEINKSIQENL------NSRDHIDILDGVNDGISKFDQYF 150
                 ****************************......99********************8 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   2.1e-19   2.5e-16       2      59 ..     388     444 ..     387     460 .. 0.90
   2 !   99.9   0.1   1.1e-31   1.3e-28      67     195 ..     477     610 ..     460     611 .] 0.91

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 2.1e-19
                 EEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEE CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpv 59 
                  v+ +vG++G+GK t l+KLa +l +++ kvl+va+DtfR +AveQL+++ e+l  ++
  CCD24063.1 388 YVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVEQLRVHVENLA-QL 444
                 57789*********************************************99987.44 PP

  == domain 2  score: 99.9 bits;  conditional E-value: 1.1e-31
                 CHHHHHHHHHHHHHHTTSSEEEEEE--SSTTHHHHHHHHHHHHHHHSSSEEEEEEETTBHTHHHHHHHHHHHHS....SCSEEEEESTTSS.SSTTHHH CS
       SRP54  67 dpaavakeavekakeekidvvlvDTaGrlqndkelmeelkkikkvvkpdevllvldattgqeavkqakaFkeav....gitgviltklDgd.akgGaal 160
                    ++ak+a++ a+++++d+vl+DTaGr +nd  lm+ lk++++ ++pd++++v +a++g + v+qak+F++a     +++ +i++k+D+     G+++
  CCD24063.1 477 LVTKIAKQAIKYAHDQDFDIVLMDTAGRRHNDPTLMSPLKSFAEQAQPDKIIMVGEALVGTDSVQQAKNFNNAFgkvrNLDFFIISKCDTVgEMLGTMV 575
                 4679*****************************************************************998764334799********972568**** PP

                 HHHHHHTS-EEEEE-SSSTTGEEE--HHHHHHHHH CS
       SRP54 161 siaaelklPikfigvGekiedleefdperlvsrll 195
                 ++++++++Pi f+gvG++++dl++ + ++ v+ l+
  CCD24063.1 576 NMVYATGIPILFVGVGQTYTDLRTLSIKWAVNTLM 610
                 *******************************9997 PP

>> SRP54_N  SRP54-type protein, helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.4   4.3e-10   5.1e-07       6      73 ..     283     358 ..     279     360 .. 0.87

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 4.3e-10
                 HHHH.HHHCCSSCGHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHCTTS.......S-HHHHHHHHHHH CS
     SRP54_N   6 nsal.kklsgkskideedleealkeleeaLleaDVgvkvvkklienvkkkavgekk.......lkpkqqvkkivkd 73 
                 +s+l ++++g+++i+  dl+ +l++l++ L++++V+ ++++ l+e+v k  vg k        ++ ++++ k++ +
  CCD24063.1 283 TSFLrRNFTGNKTISASDLKSVLDKLKQKLITKNVAPEAATFLVEQVSKDLVGTKTanwtsveITARKSLTKALTQ 358
                 4444477888*******************************************66699999999999999999876 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1         4   4.8e+03      90     108 ..      88     106 ..      71     160 .. 0.56
   2 !   23.2   0.1   4.8e-08   5.7e-05     210     288 ..     174     258 ..     136     259 .. 0.70
   3 ?   -2.9   0.0       4.3   5.2e+03      29      43 ..     483     497 ..     466     525 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4
                  HHHHHHHHHHHHXXXXXXX CS
  SRP-alpha_N  90 FdeyFdqllrelEasaeaa 108
                  F  ++ ++  el+++ae++
   CCD24063.1  88 FVITYAEQTIELDKEAEKT 106
                  5556666666666655543 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 4.8e-08
                  XXXX....XXXXXXX..XXXXXXXXXXXXXXXXXXXX.....XXXXXXXX..XXXX.XXXXXXXXXXXXXXXX.XXXXXXXXXXX CS
  SRP-alpha_N 210 gdeakasksskkkkkkpkkkgkkaRvWdadgsadeed.....kLDySapadesgae.aeaveavdastwgsktdkgefvlkdldd 288
                  ++ ++ ++++k+++k+   ++  +R+W+ +g ++e++      LD+S+++++ +++  + + a +++  g++t kgef +k++dd
   CCD24063.1 174 ASPKTINPKKKNQAKNRTLNNGGGRKWGRNGIMEETTaldssVLDFSESSNNVSGNeRTIDPAFNKEAFGNRTIKGEFLIKEIDD 258
                  333333344444444333444449******855553345567*******98887773335566799****************997 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.3
                  -S--EEEEETTTTEE CS
  SRP-alpha_N  29 sytLKwtfdnelgLv 43 
                  + ++K++ d ++++v
   CCD24063.1 483 KQAIKYAHDQDFDIV 497
                  345555555555554 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   6.1e-06    0.0073      12      44 ..     397     429 ..     392     505 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.1e-06
      AAA_31  12 GvGKTTtsvnlaaalaklgkkvLlvDlDpQana 44 
                 GvGK+T+  +la +l +++ kvL+v +D+  + 
  CCD24063.1 397 GVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSG 429
                 9***************************86554 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.2e-06    0.0014      30      95 ..     388     451 ..     352     506 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
                 EEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE------------------HCCC.TSTTEEEE CS
        MeaB  30 qvvGltGvPGaGkstlvealglelrrrGkrvavlavDPsspftGGsilGDklRleela.vdegvfiR 95 
                  v  + Gv G+Gkst +++l+  l ++  +v ++a D   +f  G++   ++ +e+la   +  ++R
  CCD24063.1 388 YVFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACD---TFRSGAVEQLRVHVENLAqLMDESHVR 451
                 477899*****************************99...577777777777776666423334444 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.4   1.7e+03      87      87 ..     332     332 ..     211     387 .. 0.53
   2 !   16.7   0.0   4.6e-06    0.0055       9      84 ..     397     564 ..     392     590 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.4
                 . CS
                 x RF
        CbiA  87 e 87 
                 +
  CCD24063.1 332 D 332
                 3 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 4.6e-06
                 TSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH..................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
        CbiA   9 GvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep..................................................... 54 
                 GvGK+t + +La+ l +++++Vl v +D+ ++ +  +e+l+  +e+                                                     
  CCD24063.1 397 GVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGA--VEQLRVHVENlaqlmdeshvrgsknrrgksgndyvelfeagyggsdlvtkiakqaikyahdqd 493
                 9***************************986554..366666666677788888888888888888888888888888877777777777777777777 PP

                 .............................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEE CS
                 .............................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 .............................................dlkrllellealgkkkalllkiagvvlnrv 84 
                                                              ++++ +++ +a+gk+     ++ ++++ + 
  CCD24063.1 494 fdivlmdtagrrhndptlmsplksfaeqaqpdkiimvgealvgtdSVQQAKNFNNAFGKV----RNLDFFIISKC 564
                 777777777777777777777777777777777777777777777666666666666666....34555555555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.5e-06     0.003       2     156 ..     389     570 ..     388     580 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.5e-06
                 EEEEEESTTCCHHHHHHHHH..CT--SS-EEEEESS.-SSCHCCCCCC................HCCCT..........EEEE.TTTTECCHCTT-HHH CS
        cobW   2 vtvltGflGsGKTtLlnhll..enraglklavivNe.fgevsiDaell................retgve.........ivel.enGciCctlredllk 71 
                 v+ ++G  G GK+t l++l     +++ k+ ++  + f + ++++ ++                +    +          vel e G     l +++ k
  CCD24063.1 389 VFSIVGVNGVGKSTNLSKLAfwLLQNNFKVLIVACDtFRSGAVEQLRVhvenlaqlmdeshvrgS----KnrrgksgndYVELfEAGYGGSDLVTKIAK 483
                 56789999999999999999995556666666666615557788888866666666655555541....044555666766653778888889999999 PP

                 HHHHHHHHHTT-SEEEEEECTTTTHHHHHTT.SHHHHHCCCECEEEEEEETTTH.....CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC CS
        cobW  72 elealeereerldviliEttGlaePapvaft.eeelksdltldavvavvDaknl....eaeeekieekaedqlaaadllvlnKtDlldee 156
                 ++ ++++++ ++d++l  t G  +  p +++  ++++++++ d +++v +a  l    + ++ k+ ++a  ++   d+++++K+D++ e 
  CCD24063.1 484 QAIKYAHDQ-DFDIVLMDTAGRRHNDPTLMSpLKSFAEQAQPDKIIMVGEA--LvgtdSVQQAKNFNNAFGKVRNLDFFIISKCDTVGEM 570
                 999999999.9**********88888885566999*************999..3357766788888888889999***********9875 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00014      0.17       6      38 ..     392     424 ..     388     430 .. 0.90
   2 ?    3.6   0.0     0.026        31     114     133 ..     483     502 ..     437     507 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                  EEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase   6 vgGKGGVGKttvsaatavklsekgkkvllistD 38 
                  + G  GVGK+t  + +a +l +++ kvl+++ D
   CCD24063.1 392 IVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACD 424
                  66888*************************998 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.026
                  HHHHHHHHCSSSSEEEEESB CS
  ArsA_ATPase 114 eellkyvkeeeydvvvlDta 133
                  ++ +ky +++++d+v++Dta
   CCD24063.1 483 KQAIKYAHDQDFDIVLMDTA 502
                  56789**************9 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.7e-05      0.02       4      39 ..     391     426 ..     388     506 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
   Fer4_NifH   4 aiyGkGGiGksttsqnlsaalaemgkkvlivGCDPk 39 
                 +i G  G+Gkst+++ l+  l +++ kvliv CD  
  CCD24063.1 391 SIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTF 426
                 788999****************************74 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.4e-05     0.041      20      82 ..     389     487 ..     382     549 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.4e-05
      AAA_30  20 vavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk..................................... 81 
                 v  ++G+ G GK+t l++l+  + +++++v+++A     + +++ +l ++ +++a+l+++                                       
  CCD24063.1 389 VFSIVGVNGVGKSTNLSKLAFWLLQNNFKVLIVACDTFRSGAVE-QLRVHVENLAQLMDESHvrgsknrrgksgndyvelfeagyggsdlvtkiakqai 486
                 66799******************************999999888.899**********88889999765555555555555555555555555544433 PP

      AAA_30  82 g 82 
                 +
  CCD24063.1 487 K 487
                 1 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.14       3      75 ..     388     503 ..     386     507 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
      AAA_24   3 lkiliyGpsgiGKTtlakel.......gpkplfidtek.Glksldadkfpdieswedfldevvel.................................. 59 
                 + + i+G +g+GK+t +++l         k+l++ ++   + +++  ++  +e++++++de                                      
  CCD24063.1 388 YVFSIVGVNGVGKSTNLSKLafwllqnNFKVLIVACDTfRSGAVEQLRVH-VENLAQLMDESHVRgsknrrgksgndyvelfeagyggsdlvtkiakqa 485
                 67789*******************98866777777777668889998865.777777777766669999999999999999999999999999999999 PP

      AAA_24  60 ..aaeladyktlviDtid 75 
                   +a+++d++++  Dt++
  CCD24063.1 486 ikYAHDQDFDIVLMDTAG 503
                 999999999999999975 PP

>> Csm1_B  Csm1 subunit domain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015      0.18      42      89 ..      48      95 ..      25      98 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                EETTEEEEEEE--HHHHHHHHHHHHHHHHHCCCCTSSS-EEEEEEEEE CS
      Csm1_B 42 agGGhfylLlpntekvkekleeiekelnewllkefkgkLylalayvel 89
                ++GG+f++L   ++++ ++ + +++++ ++++k+ + ++y+++ y+e 
  CCD24063.1 48 TAGGKFTILNVTNDSTLSTTNAYSRSFCSMFYKTKQPEIYFVITYAEQ 95
                79*****************************************99875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00027      0.33       4      57 ..     386     435 ..     382     538 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00027
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv..fvtlpsstsskdll 57 
                 + ++  ++G  G+GK+t l +l+ +l +       + +v+   ++   s+  ++l+
  CCD24063.1 386 QPYVFSIVGVNGVGKSTNLSKLAFWLLQN------NFKVLivACDTFRSGAVEQLR 435
                 5667889*******************875......555551144444444444443 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.1   1.4e+03     175     207 ..     107     137 ..      89     191 .. 0.75
   2 ?    2.2   0.1      0.14   1.6e+02      93     150 ..     250     312 ..     212     379 .. 0.60
   3 ?    9.0   0.3    0.0011       1.3      26      57 ..     390     420 ..     389     421 .. 0.95
   4 ?   -0.9   0.0       1.2   1.5e+03      32      61 ..     470     502 ..     469     503 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.1
       DUF87 175 llrkggsfsnsstdliallleklekegkitiid 207
                 l++ ++++   s ++++++ e l++  +i i+d
  CCD24063.1 107 LDLATKLW--NSLEINKSIQENLNSRDHIDILD 137
                 44445555..66677777777777777777754 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.14
       DUF87  93 npwsldpeelldllee.ddkpaaavqrsvleealdqaka....keekeklssdepveklleel 150
                  +   ++++ll+ +   d  +++++++ +l ++ + +++    ++ +   + ++ + kl+++l
  CCD24063.1 250 EFLIKEIDDLLSSATDgDSSNETENEQTYLGSLTSFLRRnftgNKTISASDLKSVLDKLKQKL 312
                 444445555555555556666666666666666666666433333333333333333333333 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0011
       DUF87  26 lAilgsTGsGKSntvavLleellekkgatili 57 
                 + i+g  G+GKS+  + L   ll +++ ++li
  CCD24063.1 390 FSIVGVNGVGKSTNLSKLAFWLL-QNNFKVLI 420
                 689********************.******99 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.2
       DUF87  32 TGsGKSntvavLleelle...kkgatililDpH 61 
                 +G+G S +v  + +++++   +++  i++ D  
  CCD24063.1 470 AGYGGSDLVTKIAKQAIKyahDQDFDIVLMDTA 502
                 699****************999999****9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 4338.32
//
Query:       CCD24064.1  [L=392]
Description: hypothetical protein NDAI_0C04040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-09   35.6  11.1    1.1e-08   34.7  11.1    1.5  1  zf-HIT           HIT zinc finger
  ------ inclusion threshold ------
      0.024   14.9   0.2      0.084   13.1   0.2    2.0  1  FOP_dimer        FOP N terminal dimerisation domain
       0.25   12.1   0.2       0.25   12.1   0.2    2.1  2  Ku_C             Ku70/Ku80 C-terminal arm


Domain annotation for each model (and alignments):
>> zf-HIT  HIT zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7  11.1   1.9e-12   1.1e-08       3      29 ..       3      30 ..       1      31 [. 0.94

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.9e-12
                -B-TTT-S.B-SEE-TTT--EESSHHHH CS
      zf-HIT  3 klCgvCgf.pakYkCpkCntryCSLrCy 29
                 +C++C++ ++kYkCpkC  ++CSL+C+
  CCD24064.1  3 SKCEICHEiEFKYKCPKCLKKTCSLKCS 30
                68*************************7 PP

>> FOP_dimer  FOP N terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   1.4e-05     0.084      40      73 ..     312     345 ..     284     352 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
   FOP_dimer  40 vfspEanlseelddRealskeLnisesdsaknkP 73 
                  f +E+ +s   ++R+ ++k+Lni+ +d+  n+P
  CCD24064.1 312 TFGSESTVSSSNENRKHITKKLNIQVNDADDNEP 345
                 699*************************999998 PP

>> Ku_C  Ku70/Ku80 C-terminal arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   4.2e-05      0.25      30      86 ..      55     110 ..      44     112 .. 0.81
   2 ?   -1.4   0.2      0.69   4.1e+03      48      61 ..     334     347 ..     298     377 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.2e-05
                 .---SS--HHHHHHHHH-....HHHHHHHHHHHHH..HHHHH......---THHHHH CS
        Ku_C  30 eeledktlpkyeaidkragslleewkelfeleeedkekkkekrkaededeepaakka 86 
                 ++++d  +   +++ +r  ++l ++k+ +el++ d  k+k+kr+ ++ +++ + k+a
  CCD24064.1  55 LKEADDENHESNVLVQRDFNYLTNLKRVVELQKVDG-KTKNKRTLQSFNNNNTNKRA 110
                 4556666666699*******************9996.*********95555567877 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.69
                 ....HHHHHHHHHH CS
        Ku_C  48 gslleewkelfele 61 
                   ++++  ++ ++e
  CCD24064.1 334 NIQVNDADDNEPPE 347
                 33333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1169  (0.0652016); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3095.59
//
Query:       CCD24065.1  [L=1260]
Description: hypothetical protein NDAI_0C04050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-55  187.8   3.6    6.6e-55  186.7   3.6    1.6  1  RNB            RNB domain
    2.1e-23   82.1   0.0    6.8e-23   80.5   0.0    2.0  1  OB_Dis3        Dis3-like cold-shock domain 2 (CSD2)
    1.8e-22   79.5   0.7    1.3e-21   76.7   0.0    2.6  2  Dis3l2_C_term  DIS3-like exonuclease 2 C terminal
    5.5e-07   29.7   0.0    0.00015   21.8   0.0    3.0  2  CSD2           Cold shock domain
    0.00012   21.9   0.1    0.00042   20.1   0.1    1.9  1  Rrp44_CSD1     Rrp44-like cold shock domain
     0.0041   16.8   0.0        1.1    8.9   0.0    2.5  2  OB_RNB         Ribonuclease B OB domain
  ------ inclusion threshold ------
       0.44   10.5   5.3        1.3    9.0   5.3    1.7  1  DUF489         Protein of unknown function (DUF489)


Domain annotation for each model (and alignments):
>> RNB  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.7   3.6   2.6e-58   6.6e-55       2     325 ..     703    1028 ..     702    1029 .. 0.90

  Alignments for each domain:
  == domain 1  score: 186.7 bits;  conditional E-value: 2.6e-58
                  xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB    2 kdlrdllvitIdpedakdl..DdAisieklpngnyelgVhIADvshyvkegspldkearkratsvyLpekvvpMLPqelsedlcSLnpgedrlalsv 96  
                  +d++d + ++I     +d   + A+++++ ++g +elg h+ D +  ++e+s+ld++arkr++ v +p+kvv++LP+ l+e l SL+ +++  +lsv
  CCD24065.1  703 TDFTDPSEYSILAIAENDSlsEFALHVKNNNDGTFELGCHVVDATAHIEENSSLDRRARKRSSGVFMPQKVVNLLPKALNESL-SLKKDKKSATLSV 798 
                  56666555555554444444478*****999**************************************************95.************* PP

                  xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
         RNB   97 lidvdek.gevlsveiylsvIkskarltydevqdlleqkdekeekktaedLellyelakalrkkRlkkgalef.dspeikllldedkgnrielkvee 191 
                  + +++++  e++s+ + +s+I +++ +t +e++d l+      +++++  L  + ++a  + + R++    ++  + +   ++d+ ++  ++l++ +
  CCD24065.1  799 IYTLNAEtLEIRSTTVCESIILPSRFMTAKEIDDNLA------SDDVDPYLSIVEKIATSFYATRIEYPEAKLmPTLSLFESIDD-EKVNVDLNILD 888 
                  ******99****************************5......4568999******************77788233333344555.667799***** PP

                  xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB  192 etkahslveelmllANelvArfl.seleipailriheepsnekledliklakklglklednsskknlqeslekleeeeaeqllselllrllkeakys 287 
                  +t    +++e+    N+++A+++  +l++  +lr+  +p  +k+  + +  +k+gl+ +  s + ++ +s+ k+e+++++  ++ ll +++++aky+
  CCD24065.1  889 RTLGYVVINEIQHKVNSTIAEKIyTKLGDSSFLRREAQPVITKMSLFKNKIQKFGLDIDITSIA-TIIQSILKIEDSDVRVGVEILLFKTMSRAKYF 984 
                  ***********************9999******************************6666666.9******************************* PP

                  xxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB  288 sep......vgHfgLaleeYthfTSPirRYpDlvvhrllkalla 325 
                  +          H+ L+l++YthfTSP+rRY+D vvhr+l+ +++
  CCD24065.1  985 VAGkvdpdqYSHYSLNLPIYTHFTSPLRRYADHVVHRQLRSAIR 1028
                  777777788******************************99875 PP

>> OB_Dis3  Dis3-like cold-shock domain 2 (CSD2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   2.7e-26   6.8e-23       2      77 .]     595     670 ..     594     670 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 2.7e-26
                 EEE--SSTTS--EEEETTSSTTTHHHHTTTTTT--EEEEE----TT-SS-EEEEEEE-HHHHHHHHHHHHHHHHTT CS
     OB_Dis3   2 vlfkPldkrlPriliptkelpeeflenpeelegklfvvkidsWsetsryPlGeivksLGeagdieaeteaiLleng 77 
                 ++fkP+dk++P i ipt+ +p++f+en +++++klfv+ i++W++ts +P+G +v++LGe+ d ++e++ iL +n+
  CCD24065.1 595 AWFKPTDKKVPLIAIPTELAPKDFVENADKYSDKLFVASIKRWPITSLHPFGILVSELGEINDPNTEIDSILRDNN 670
                 79**********************************************************************9996 PP

>> Dis3l2_C_term  DIS3-like exonuclease 2 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.5      0.73   1.9e+03      48      76 ..     282     310 ..     267     320 .. 0.56
   2 !   76.7   0.0   5.1e-25   1.3e-21       1      84 [.    1077    1161 ..    1077    1164 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.73
  Dis3l2_C_term  48 LtLyWkkdvpeaevvqeeekfssvvkvvl 76 
                    ++  W++++++++ +q++++ s  + +++
     CCD24065.1 282 INSNWRNQSQTQSQIQQQQQQSPFRHRQT 310
                    66679777766655555544444443333 PP

  == domain 2  score: 76.7 bits;  conditional E-value: 5.1e-25
  Dis3l2_C_term    1 GpleekavVvnVldssfDVlileyGlekRVyldklplkefefdk.tkvLtLyWkkdvpeaevvqeeekfssvvkvvlkseeeslk 84  
                     G+l ++a+V++V++ssfDV+i+e+G+ekRV+ d+lpl ++efd  ++vL+L+W+++v++a++v+ +ek+ ++++++ k++ +s++
     CCD24065.1 1077 GQLLTMATVLQVYESSFDVFIPEFGVEKRVHGDQLPLLKAEFDGvSRVLELHWQPGVDSATFVPADEKNPKSYRNSIKNKFRSTT 1161
                     8999********************************9999***76999***********************99999999887766 PP

>> CSD2  Cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.018        46       6      34 ..     397     426 ..     394     438 .. 0.81
   2 !   21.8   0.0     6e-08   0.00015      26      69 ..     627     671 ..     596     674 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.018
        CSD2   6 dkrlkqdifip.keklkgakdGdkVvveit 34 
                 d  l  di+i   ++++ a +Gd+V ve++
  CCD24065.1 397 DGALDADIYICgSKDRNRALEGDLVAVELL 426
                 566788999875788999**********86 PP

  == domain 2  score: 21.8 bits;  conditional E-value: 6e-08
        CSD2  26 GdkVvveiteyp.dkknpeGevievLGkkgdpgveilsilakhgl 69 
                 +++ v+ i+++p +  +p G  +  LG+ +dp++ei+sil+ +++
  CCD24065.1 627 DKLFVASIKRWPiTSLHPFGILVSELGEINDPNTEIDSILRDNNF 671
                 5556788*****76667************************9987 PP

>> Rrp44_CSD1  Rrp44-like cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.6e-07   0.00042       4     111 ..     359     470 ..     357     476 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.6e-07
                 ------HHHHHHHHHTTSEEEEEEEEESSBTTEEEEE-S.SSSS-EEEESHHHHTS--TT-EEEEEE--.GGG-B---SS-B-CCCSSTT--TT-B..- CS
  Rrp44_CSD1   4 fpeyystarvmgglkngvlyqgniqiseynflegsvslp.rfskpvlivgqknlnrafngdqvivellp.qsewkapssivldsehfdvndnpdie..a 98 
                 f  y   a + g +++g l  g +++ + n  +  vs    +   + i g k+ nra++gd v vell  +  w +           d   + di    
  CCD24065.1 359 FAPYLPQANIPGLIQEGKLVAGILRVNKKNRSDAWVSTDgALDADIYICGSKDRNRALEGDLVAVELLVvDDVWDSKKEKEEKKRRKDASLQQDIIplN 457
                 6678889999999***********************986267899*********************997255699999988889999999999985336 PP

                 -SSS--SSSSS-S CS
  Rrp44_CSD1  99 gddddnnesssnt 111
                 g+dd  n++s+n+
  CCD24065.1 458 GNDDYHNDASANA 470
                 9999999999886 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00045       1.1      11      44 ..     392     427 ..     380     443 .. 0.81
   2 !    5.2   0.0    0.0067        17      19      37 ..    1092    1110 ..    1086    1112 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00045
                 EEEEECT..TEEEEE.-HHHHTTS-TT-EEEEEEEE CS
      OB_RNB  11 GFlipde.gkeDifi.ppeqmkkamhGDrVlvritk 44 
                 +++++d+  + Di+i  +++ ++a+ GD V v++  
  CCD24065.1 392 AWVSTDGaLDADIYIcGSKDRNRALEGDLVAVELLV 427
                 79*****99******56899************9865 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0067
                  TEEEEE-HHHHTTS-TT-E CS
      OB_RNB   19 keDifippeqmkkamhGDr 37  
                  + D+fip+  ++k  hGD+
  CCD24065.1 1092 SFDVFIPEFGVEKRVHGDQ 1110
                  569***************7 PP

>> DUF489  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.3   0.00051       1.3      56     122 ..      19      85 ..       2      91 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00051
                 HHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHTTHHHHTTS-TTSHHH CS
      DUF489  56 klGletlleqlekekkkkdaeltryalsllalerkLsknkealaklgerieqierqlehfdllhenv 122
                 + G + + +q++  +++++ elt ++++ l+l+++L+  ++  ++l  +++q+++q+ +f  +++n 
  CCD24065.1  19 TGGGKNVPKQIHVAHRRSQSELTNLMIEQLTLQKQLEAVQAQQQQLLAQQQQLAQQTGQFIATNNNT 85 
                 4577888899999999999**************************************9997776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1724  (0.0961571); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.97u 0.30s 00:00:01.27 Elapsed: 00:00:00.48
# Mc/sec: 7876.83
//
Query:       CCD24066.1  [L=625]
Description: hypothetical protein NDAI_0C04060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-17   62.8   0.0    4.6e-17   61.8   0.0    1.5  1  Pyridoxal_deC    Pyridoxal-dependent decarboxylase conserved 
    7.4e-06   25.5   0.0    1.2e-05   24.8   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    0.00018   20.6   0.0     0.0028   16.7   0.0    2.0  2  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Pyridoxal_deC  Pyridoxal-dependent decarboxylase conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   7.7e-21   4.6e-17      49     374 ..     207     516 ..     183     517 .. 0.82

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 7.7e-21
                    ...HHHHHHHHHHHHHT-BTSSTTTSHHHHHHHHHHHHHHHHHTT--GGGTCCT-EEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTS.HHHHHC CS
  Pyridoxal_deC  49 gnslisllgdlLadainkngftweesPaltelevvvldwlaellglpeeflekegggvlqvgssestllallAartkvikemkekgkelkeaeild 144
                    g++li l +    +    n +  +  Pa+ ++e  v+ ++ +l++ pe +      g+ ++g++es lla l a+       ++kg          
     CCD24066.1 207 GSDLIHLQSVAFEKYCVANQLHPDVFPAVRKMEAEVVSMILKLFHGPE-ET---SCGTTTSGGTESLLLACLSAKMYGY---EHKG--------IT 287
                    55555555555555566677778889*********************3.33...459****************997544...4444........33 PP

                    CEEEEEETTS-HHHHHHHHHHT-EEEEE--BTTTBB-HHHHHHHHHHHHCTT.EEEEEEEEBS-TTT-BB--HHHHHHHHHHCT-EEEEE-TTGGG CS
  Pyridoxal_deC 145 klvlytsdqahssvekaalvlgvklrvipldengklrgaalekaieedkekGlipffvvatlGttvlgaFddlkelgdicekydlwlHvDAAyaGs 240
                     + +   + ah   +kaa ++g+kl  ++ld+       +l k++e+ ++k  +++ v   +     g  dd++ lg++    +++lHvD   +  
     CCD24066.1 288 EPEMIIPKTAHAGFDKAAYYFGIKLHHVELDP-V-TFKVDL-KKVEKFINK-NTVLLVG-SVPNFPHGIADDIEGLGKLALLNNIPLHVDCCLGS- 377
                    577899999**********************9.3.344444.567777777.3443444.3445578899***********************99. PP

                    GGGSGGGGG...........GGTTGGGESEEEEECCCCTS--SS-EEEEESSCCGCHHHH-EEECCCT.TTTTTSEECCCGSSSSSG.HHTHHHHH CS
  Pyridoxal_deC 241 aficpeirh...........llkgieradSitvnphKlllvlldcsalivkdkealqqalqleaeYLehedsdvaadlgtkaiplsr.rvrilklw 324
                     fi  ++ +            +++++ + Si++  hK++ ++ + s+++++++    ++  ++ e+ +         +g  ++  sr    ++  w
     CCD24066.1 378 -FIVAFMEKagfnedgqlplSDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNEDLRMHQYYINSEWTG-------GLYGSPTLAGSRpGALVVGCW 465
                    .888888877888999999999******************************9866666655555555.......7789999*****99999**** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT.EEECSTTBSSEEEEEE CS
  Pyridoxal_deC 325 fvlralGveglqnqirksvelakyleklirkder.feivaevelglVcFrl 374
                      +   G +g+ +  r  v   ++l+  i ++ +  ei  ++++   +F+ 
     CCD24066.1 466 ATMINIGENGYIESCRSIVTATRKLKRYIDEKLPdLEILGDPKFSVLSFSS 516
                    99999************************9998879***9**999999975 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0     2e-09   1.2e-05      41     146 ..     259     374 ..     247     378 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 2e-09
                      EEEESSHHHHHHHH.HHH..TTTT......TT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTE...EEEEEB-GGG CS
  DegT_DnrJ_EryC1  41 aiavssGtaAlhla.Lra..lgvg......pgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitert...kaIlpVhlyG 122
                        ++s Gt++l+la L+a     g       + e I+p++  ++  +a+ + g k   v+ dp t+ +d +++e+ i+++t    + +p    G
       CCD24066.1 259 GTTTSGGTESLLLAcLSAkmY--GyehkgiTEPEMIIPKTAHAGFDKAAYYFGIKLHHVELDPVTFKVDLKKVEKFINKNTvllVGSVPNFPHG 350
                      5688899***99984555552..2446566689************************************************6444445556678 PP

                      B---HHHHHHHHHHCT-EEEEE-T CS
  DegT_DnrJ_EryC1 123 qvadmdalkaiaakhglkvieDaA 146
                       + d++ l ++a   ++++  D++
       CCD24066.1 351 IADDIEGLGKLALLNNIPLHVDCC 374
                      888********************9 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.7e-07    0.0028      67     176 ..     262     373 ..     239     378 .. 0.83
   2 ?    1.5   0.0     0.019   1.2e+02     199     333 ..     411     533 ..     398     546 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.7e-07
                  ESSHHHHHHHHHHHCCCC.....-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBET.TSCBEGGGHHHH--TTEEEEEEESBETTTTEB--H CS
  Aminotran_5  67 tsGtteainlvalslars.....lkpgdeivvteaehhanlvpwqelakrtgakvkviplde.egeldldelekllnektklvaithvsnvtGtiqpv 158
                  tsG+te++ l+ ls++         ++ e+++ ++ h +      ++a   g+k+++++ld+ + ++dl+++ek +n++t l+  +  +  +G+ +++
   CCD24066.1 262 TSGGTESLLLACLSAKMYgyehkGITEPEMIIPKTAHAGF----DKAAYYFGIKLHHVELDPvTFKVDLKKVEKFINKNTVLLVGSVPNFPHGIADDI 355
                  8999999999877765545212233445788887776665....589999***********835689****************99999999******* PP

                  HHHHHHHHHTT-EEEEE- CS
  Aminotran_5 159 eeigklakkkgalvlvDa 176
                  e +gkla  +++ ++vD 
   CCD24066.1 356 EGLGKLALLNNIPLHVDC 373
                  *****************7 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.019
                  TTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCT.S CS
  Aminotran_5 199 ghK.llgPtGiGvlyvrkellekleplllggemveevsleettfaeapskfeaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlks.l 294
                  +hK  ++P+G +v++ r+e l  +++ ++ +e        + ++ ++p+   aG+ + a ++g+ a++  + e g+ ++ +   +++ +l+  +++ l
   CCD24066.1 411 THKyGFAPKGSSVIMYRNEDLR-MHQYYINSE-------WTGGLYGSPT--LAGSRPGALVVGCWATMINIGENGYIESCRSIVTATRKLKRYIDEkL 498
                  6887788888888888884443.333333333.......2333555555..68999999999999998888666666666666677777777777669 PP

                  TTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTE CS
  Aminotran_5 295 pgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegI 333
                  p+++++g    + + s++sf+ k ++  ++   L ++g 
   CCD24066.1 499 PDLEILG----DPKFSVLSFSSKVIDIYELSDRLTKKGW 533
                  9999988....6889999999999999888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4416.79
//
Query:       CCD24067.1  [L=760]
Description: hypothetical protein NDAI_0C04070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-60  202.2  24.2    9.7e-60  202.2  24.2    3.3  3  HDA2-3    Class II histone deacetylase complex subunits 2 and


Domain annotation for each model (and alignments):
>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.2  24.2   5.4e-64   9.7e-60       3     253 ..      11     402 ..       9     422 .. 0.90
   2 ?   -1.8   0.1     0.079   1.4e+03       4      39 ..     503     537 ..     501     589 .. 0.70
   3 ?   -3.0   2.3      0.18   3.3e+03     137     155 ..     625     666 ..     548     740 .. 0.64

  Alignments for each domain:
  == domain 1  score: 202.2 bits;  conditional E-value: 5.4e-64
                 -SEEEEEE---HHHHHHHHHHHHHTHHHHHHHH...........HSTTT--HHHH..............HHHHHHHH..HHHHHHH-GGGT--TT--S- CS
      HDA2-3   3 sgdyylPtpltelqkelteqivslhyedllkyv...........etsdsqeklsls.............ikslticle.nlslvanHPsLLvdHympkk 76 
                 ++++ylP++lt++q++l+e+++slh+e++  ++                      +             + ++t++l+ n+++v nHPsLLvdHymp++
  CCD24067.1  11 TKIFYLPVGLTTFQRDLIEILISLHSESFKLELdkissssssaaT----------KpqilksntsnafsTRQMTYLLNsNIKAVINHPSLLVDHYMPRQ 99 
                 679**************************9999744444443330..........25556666777777999*****99******************** PP

                 S-STTHHHHHHHT-HHHHHHHHHHHHHTTSS....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................... CS
      HDA2-3  77 lllkelpeklaetSgKFkvlndlvnliierkrksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkks..................... 154
                  l++e++e l++tS+KF++l++l+ +++++     l++l+ +++ keld++E+lllG+++k+kr+sg++lyde++ ++                     
  CCD24067.1 100 YLRMEPNESLISTSDKFQKLQNLLFILQNYP---NLQILLTSHNIKELDIVEGLLLGQNFKLKRFSGTSLYDEEHIYPieeepenlqlqqkqtqkqeyd 195
                 ******************************9...8**************************************************************** PP

                 ................................................................................................... CS
      HDA2-3 155 ...............................................................................................kdtk 158
                                                                                                                +d++
  CCD24067.1 196 ssttrsksttttngkklkknnvnklskntrnnsrensmtpyssasssssttssssivnpiassinpatfgilknsghhnnhhptpssstststyaRDDY 294
                 ***********************************************************************************************9999 PP

                 .....................-SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------.....--EEEEEETTSHHHHHHH CS
      HDA2-3 159 kns..rktkekl.....kkkihsltihllsttrqltkdksllenikfdliiafDssvdtsspsveslrtqnrkknk.....lpiirlvpinSieHvkLc 245
                 ++s  r+ ++++      +   ++++++l+tt++l++d+sll+n+k++lii+fD+++d++   ++ +r  +r   +     +pii+l++ +S++H+ L+
  CCD24067.1 295 DYSmkRNSRKRKlehehGNVTRDKNWIFLTTTTHLKNDPSLLSNYKINLIISFDPMLDPHLSAIQNIRSPQRYLLHeqnhfIPIIKLLVNDSPDHYILS 393
                 9998655555447887444456789*******************************************9988544456678*****************9 PP

                 HT.S-TT-H CS
      HDA2-3 246 fk.kdedep 253
                  + ++e+ +
  CCD24067.1 394 QTnPQEEGQ 402
                 996333332 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.079
                 SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTT CS
      HDA2-3   4 gdyylPtpltelqkelteqivslhyedllkyvetsd 39 
                 +++ + ++++++q +l+   ++  y+dl ++ ++++
  CCD24067.1 503 NEHNVTMTISQYQTALMQMALK-RYHDLQNEHSVNE 537
                 5788888888888888877665.5888888874443 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.18
                 EEEESSS--S--S---S-........................ CS
      HDA2-3 137 kikrysgeklydekkkks.......................k 155
                 ++k+ + ++l+ e++kk+                        
  CCD24067.1 625 TFKNIKLNELQMENEKKNqlndelrsqyqlkstlaadmghsL 666
                 444555555555555555444444444444444433333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2342  (0.130626); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.25s 00:00:01.05 Elapsed: 00:00:00.41
# Mc/sec: 5515.02
//
Query:       CCD24068.1  [L=233]
Description: hypothetical protein NDAI_0C04080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-23   81.3   0.5    8.3e-23   80.3   0.5    1.5  1  Mhr1      Transcriptional regulation of mitochondrial recombi


Domain annotation for each model (and alignments):
>> Mhr1  Transcriptional regulation of mitochondrial recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.5   4.6e-27   8.3e-23       1      84 [.      25     110 ..      25     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 4.6e-27
        Mhr1   1 geqiyvfrnletgqVvYSltrvleknkalkqlpfvgkkqv..............paklRkDlWkplavvefpkgeagvsvyqkLrelrklreleweke 84 
                 ++++y+frnle+gqV+YS+ +            +v+++++               +++R+DlWk+++vv+++++++gv ++q+L++lr lr++++ ++
  CCD24068.1  25 APHVYLFRNLEQGQVLYSQLP------------QVTNHMIektfkkkvdswmykKPSTRRDLWKCMCVVNMKDYDDGVLLFQNLQRLRFLRDFAQLDK 110
                 689***************444............4444444333332223334545*************************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2021.51
//
Query:       CCD24069.1  [L=231]
Description: hypothetical protein NDAI_0C04090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-40  138.5   2.6    2.8e-40  138.3   2.6    1.1  1  OSCP      ATP synthase delta (OSCP) subunit


Domain annotation for each model (and alignments):
>> OSCP  ATP synthase delta (OSCP) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   2.6   1.6e-44   2.8e-40       2     172 .]      50     227 ..      49     227 .. 0.94

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 1.6e-44
        OSCP   2 arrYAkAlfelAkekgaleeveeelealeavlaedkklaellsnpavsaeekkdlleelfke...klseavknflkllaenkRlalLpeiaeefeella 97 
                 +++YA+Alf++A  ++++++++++l+++++++ +d++l+++l+npa+s +++++++++l+k+   k ++ v nflk+la+n+Rl+lL+ i+e++++l +
  CCD24069.1  50 EGTYATALFKAAYMDSTIDSTASSLNSIQNLIHKDSSLKSILENPALSPDDRVSIVNSLLKGingKSNKDVDNFLKVLADNNRLNLLSVICEQYNKLND 148
                 679***********************************************************999********************************** PP

        OSCP  98 eargiveaeVtsavpLtdeqlekleaal...akkl..gkkkvkleekvdpsliGGvvvkvgdkviDgSvkgkLeklkeqL 172
                 +++giv+ +++s ++L+d+  ++l + +   + ++  + + +kl++ v p+++GG++v+++dk++D S+++k+++l++ L
  CCD24069.1 149 AQQGIVQGNIISSKQLDDKVMKRLHNGIlqsK-SIvkEGQVLKLNNLVRPDILGGLIVEIDDKTVDLSLSTKIQNLNKIL 227
                 *************************9988742.332334468**********************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1706.11
//
Query:       CCD24070.1  [L=560]
Description: hypothetical protein NDAI_0C04100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-24   85.4  12.9    5.4e-24   85.4  12.9    4.4  3  AATF-Che1  Apoptosis antagonizing transcription factor
    4.5e-23   81.6   0.6    4.5e-23   81.6   0.6    4.5  4  TRAUB      Apoptosis-antagonizing transcription factor, C-ter


Domain annotation for each model (and alignments):
>> AATF-Che1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   9.3         2   1.8e+04      73     134 ..     107     186 ..      75     187 .. 0.55
   2 !   85.4  12.9   6.1e-28   5.4e-24       1     139 []     188     318 ..     188     318 .. 0.86
   3 ?   -8.3  11.5         2   1.8e+04     113     113 ..     419     419 ..     322     557 .. 0.55

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 2
   AATF-Che1  73 reelleqneikkla.................eskeeeekkkskrkrkkkkkeetslee..lwkeleklekalkpfrnatld 134
                 r+el eq + ++++                 ++ +++e++++++++ ++++++++l+   l k +++  k+ ++  +++++
  CCD24070.1 107 RDELSEQDDEENSSdalsfktdsedeimdvnDNGNDSESSNNEEEE-EREDNDEELQRlrLAKLIKQETKQSMNKLSQSIQ 186
                 4455444442222246666666666666655444433333333333.3344455565544577777777777777777766 PP

  == domain 2  score: 85.4 bits;  conditional E-value: 6.1e-28
   AATF-Che1   1 DaeKGkaVknQlklwDslLelRIklQkaltaanqLp.qpetlkeflesseefeealeeaekalkklleslleLreelleqne.ikklaeskeeeekkks 97 
                 Da KG ++ +Q+kl+D++++lRIklQka+t+an+Lp ++e+++++ +++++ ++ l+e ++ l k+l++l+++r+++ ++ + i++ + +         
  CCD24070.1 188 DASKGYSITKQNKLFDNIIDLRIKLQKAVTNANKLPiTKESWEQYEQDNNKSNSLLTENSNLLTKVLSQLIDFRKDI-QKFDnINQNNGE--------- 276
                 89**********************************88888899988899***************************.777766643222......... PP

   AATF-Che1  98 krkrkkkkkeetsleelwkeleklekalkpfrnatldkWseK 139
                 ++++ k  ++++++++l +e+++l+++l+++r+ +l+kWs+K
  CCD24070.1 277 EHEEMKATDKKRTFKSLTNETNQLDSNLQKYRKVVLHKWSKK 318
                 222223344457899*************************98 PP

  == domain 3  score: -8.3 bits;  conditional E-value: 2
   AATF-Che1 113 e 113
                 +
  CCD24070.1 419 T 419
                 1 PP

>> TRAUB  Apoptosis-antagonizing transcription factor, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   2.5      0.02   1.8e+02      23      49 ..     157     192 ..     139     200 .. 0.60
   2 ?   -0.6   1.8      0.22     2e+03       5      51 ..     254     309 ..     251     318 .. 0.40
   3 ?   -2.9   0.2       1.2   1.1e+04       7      43 ..     384     418 ..     380     420 .. 0.40
   4 !   81.6   0.6     5e-27   4.5e-23       1      85 []     432     522 ..     432     522 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.02
       TRAUB  23 s........rqllalqklrkkkkk.kkkvDtkaSKG 49 
                 +           l  q+ +++++k ++++ + aSKG
  CCD24070.1 157 NdeelqrlrLAKLIKQETKQSMNKlSQSIQRDASKG 192
                 1223334342223356677778889889*******9 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.22
       TRAUB   5 Lkelvekksaess....aaasds.....rqlla...lqklrkkkkkkkkvDtkaSKGRk 51 
                 L +l++ +++ ++    +  + +     +++ a    ++ ++ ++ +++ D    K Rk
  CCD24070.1 254 LSQLIDFRKDIQKfdniN--Q-NngeehEEMKAtdkKRTFKSLTNETNQLDSNLQKYRK 309
                 666666666555533221..1.1232221111111111111112223445555555555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.2
       TRAUB   7 elvekksaessaaasdsrqllalqklrkkkkk.kkkvD 43 
                 e+ +++ +++++++++    l + k  + ++k ++ +D
  CCD24070.1 384 EMTNQEGNNDKEEEDE---NLDIPKNYDPRRKdNNAID 418
                 4555555444433222...2223333333333255566 PP

  == domain 4  score: 81.6 bits;  conditional E-value: 5e-27
       TRAUB   1 YqqLLkelvekksaessaaasds...rqllalqklrkkkkk.kkkvDtkaSKGRklrYevheklqNFmapeer..gkweeeqidelfasLl 85 
                 Y++LL+++v+kk a+ ++++ ++   +  +a++   ++++k kk++DtkaSKGRkl+Y+++e ++N+++p+++  +kw+++qide+fa Ll
  CCD24070.1 432 YRVLLNDMVDKKIANVQNNNGSAnnnSANVAVTLTSRSNNKlKKNIDTKASKGRKLNYSIQESIANYETPINNgnYKWNDDQIDEFFAGLL 522
                 9************9999653333445333445555555555679**************************99666**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2305  (0.128563); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 3736.63
//
Query:       CCD24071.1  [L=356]
Description: hypothetical protein NDAI_0C04110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-25   88.3   1.1    1.3e-24   87.2   1.1    1.6  1  RNase_H2-Ydr279  Ydr279p protein family (RNase H2 complex com
    2.6e-13   50.0   1.2    6.6e-13   48.7   1.2    1.7  1  Ydr279_N         Ydr279p protein triple barrel domain
  ------ inclusion threshold ------
      0.026   13.9   0.2      0.041   13.2   0.2    1.4  1  AGOG             N-glycosylase/DNA lyase


Domain annotation for each model (and alignments):
>> RNase_H2-Ydr279  Ydr279p protein family (RNase H2 complex component) wHTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   1.1   2.2e-28   1.3e-24       1     159 [.     124     270 ..     124     271 .. 0.92

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 2.2e-28
  RNase_H2-Ydr279   1 Fllipillklkskses.....................krrFlsldDlldslaessedlsellklersdiprslleerlaaiCdtveegdetmYr 73 
                      ++li +l+++++  e+                     ++rFl+l+D++d+l +    +++++    s+i+ ++le++l++iCd+++e+++t+Y+
       CCD24071.1 124 YNLIGFLYRKTEVVENendyvkalpsndnennmesitSDRFLTLRDFHDTLVD---SHDKNW----SKISLNVLENALNKICDCIQEAGDTYYK 210
                      67888888887776668888888888888899999******************...9*****....7999************************ PP

  RNase_H2-Ydr279  74 lseekllefLlsKverladeaglpesleekfvrkaleapllsvkreedastseedapeeilkllrlryAidllcssYlppslsekL 159
                      +++ k++efL +Kve++ d++       +k+++  +                + d++e+i++++++ ++++ll+ s++p+ ++ +L
       CCD24071.1 211 INPVKITEFLVRKVEKINDNF-------PKSIP--I----------------PYDYREDIKESMKTVLSCNLLI-SLIPKRVYDDL 270
                      *********************.......99999..5................6799*****************8.9*******998 PP

>> Ydr279_N  Ydr279p protein triple barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   1.2   1.1e-16   6.6e-13       9      79 .]      21     121 ..      13     121 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.7 bits;  conditional E-value: 1.1e-16
    Ydr279_N   9 s.......earivtLphPrtg.sksryllc.pestgqlyEltkisapk.....................stprSwliepetdrtkgyVlkdakllvatp 77 
                         +++i+tLphP+++ +ksr+ ++ + +t++ ++l ++s++k                     s+++S+++  e+dr++gy+++++ + ++t+
  CCD24071.1  21 LndaetekDIEIFTLPHPTNNpTKSRIPIIqNITTNETFQLISHSFSKgskythqfdlangkyhytnddSPIKSTFLIDENDRSQGYIMESSYFQFSTK 119
                 25555556**************999999998335788**********77**************9999999***************************** PP

    Ydr279_N  78 iD 79 
                 +D
  CCD24071.1 120 YD 121
                 *9 PP

>> AGOG  N-glycosylase/DNA lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   6.8e-06     0.041     106     180 ..     172     247 ..     111     272 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.8e-06
                 CHHHTTTHHHHHHHH.HTHHHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHHTS-----TTS-----HHHHHHH CS
        AGOG 106 efledleleelksyl.enleelleelakilgskkesKTvvFavKmlyYalrialgeeiplpfeipiPvDvRiaklt 180
                 ++l d ++++ ++   ++le+ l+++  ++++  +    +  vK+  + +r + + +   p  ipiP D+R +   
  CCD24071.1 172 DTLVDSHDKNWSKISlNVLENALNKICDCIQEAGDTYYKINPVKITEFLVRKVEKINDNFPKSIPIPYDYREDIKE 247
                 444444445555545344999999999999999999999999*****************************65544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2740.58
//
Query:       CCD24072.1  [L=428]
Description: hypothetical protein NDAI_0C04120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-34  120.1   0.7      2e-34  119.2   0.7    1.4  1  AA_kinase  Amino acid kinase family
    1.5e-19   69.7   0.0    3.3e-19   68.6   0.0    1.6  1  PUA        PUA domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.7   2.3e-38     2e-34       3     240 ..       9     239 ..       8     241 .. 0.92

  Alignments for each domain:
  == domain 1  score: 119.2 bits;  conditional E-value: 2.3e-38
                 EEEEE-TTCCCCTCC.....HHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHT CS
   AA_kinase   3 vVvKlGGssltdkee.....aslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaa 96 
                 +V+KlG+ssl d+++     a +  ++e + +l++ g+k+++V++g +++ gl +l  +l++++++            +a+ +a+a++g+  +   ++ 
  CCD24072.1   9 LVIKLGSSSLVDEKTkepklAIMSLIVETVVKLRRLGHKVIIVSSG-GIAVGLKTL--NLDKRPKH------------LAEVQAIAAVGQGRLIGRWDL 92 
                 8*******888666679*****************************.999999999..9*******............7899***************** PP

                 THGEEEE-GGGTCEECCCE..HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCT CS
   AA_kinase  97 glpavglsaaaldateagrdegsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpd 195
                 ++++++   a++++t++++    d + +++ +++i+ell++gvvp+++++++l+  +   +g +Dt++a+  +++gAd+l +ltdVd +y+++p+ +pd
  CCD24072.1  93 LFSQFNQRIAQILITRNDI---VDWTQYKNAQNTINELLKMGVVPIVNENDTLSISEI-KFGXNDTLSAITSALVGADYLFLLTDVDCLYTDNPRTNPD 187
                 *******************...999**************************9999977.59************************************** PP

                 TCECCEEEHHHCHH........CSSS.TTTHHHHCHHHHHHHHHCTT-EEEEE CS
   AA_kinase 196 arllpeisvdeaee........saselatgGmkvkhpaalaaarrggipvvIt 240
                 a+++  +   + +           s  +tgGm++k+ aa  a + g ++++I+
  CCD24072.1 188 AKPILVVPDLTKGLpgvtttngAGSDVGTGGMETKLIAADLATNAG-VHTIIM 239
                 **9866644444447899999999*******************999.666664 PP

>> PUA  PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   0.0   3.7e-23   3.3e-19       1      74 []     321     408 ..     321     408 .. 0.96

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 3.7e-23
                 CEEEE-HHHHHHHHT..T-EEEGGGEEEEETT--TTSEEEEEETTS............CEEEEEEESS-HHHHHHHCTSEEEEEEEEE CS
         PUA   1 grvvvddgAvkalls..gasLlapGvvevegdfeegdvVaivdedg............elvavGlanysseelakikggksveiervl 74 
                 g +++d+gA++al++  +a Ll+ G++++eg+f+e ++V+++ ++              +v+++++ny+s el kikg+ s++ie+vl
  CCD24072.1 321 GSIIIDQGAYNALTRknKAGLLPVGIIDIEGTFHELECVDLKLGKKlengeldpsvplVTVGRARCNYTSIELSKIKGLQSDQIEDVL 408
                 689*************999*************************6667779**********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3377.08
//
Query:       CCD24073.1  [L=1388]
Description: hypothetical protein NDAI_0C04130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-86  290.2   0.0    1.1e-85  287.8   0.0    2.3  2  CPSF_A    CPSF A subunit region
  ------ inclusion threshold ------
      0.059   12.9   0.5         10    5.6   0.1    3.1  3  HPS3_N    Hermansky-Pudlak syndrome 3


Domain annotation for each model (and alignments):
>> CPSF_A  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.17   1.5e+03     183     205 ..     387     408 ..     366     412 .. 0.78
   2 !  287.8   0.0   1.3e-89   1.1e-85       2     321 ..    1020    1348 ..    1019    1349 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.17
                 E--SSSEEEEEETTSEEEEEE-- CS
      CPSF_A 183 lvdgedtvlvaDkfgnlfvlryd 205
                   d+ +t+l+ D++ nl  +r++
  CCD24073.1 387 TEDD-ETLLLMDAQSNLYYVRLE 408
                 4344.6***********999987 PP

  == domain 2  score: 287.8 bits;  conditional E-value: 1.3e-89
                  -EEEEE-T..TT-EEEEE--TTEEEEEEEE--B-SSTTT---B--EEEEEEE---SSS--E.EEEEEEEEEE-......SS--EEEEEEEEEEEES- CS
      CPSF_A    2 ssiklvdpiskeeidsleLeenEavlsvksvelessettkekkellvVGtafnlgedpaarsGrilvfeiiev......petnrkLklvhkeevkga 92  
                  s + l++p ++++ids  + +n +v +++s+ +++++++++k+e+++ G++ + +ed++++ G +++++i+ev      p+tn++Lk+v+keev+g+
  CCD24073.1 1020 SGVLLINPLTWNVIDSKTFGKNTLVNDMRSMLIQVNSKARRKREYIIAGVTHIGTEDLPPT-GAFHIYDITEVvpepgkPDTNYRLKEVFKEEVRGI 1115
                  7899******************************************************999.*********************************** PP

                  ---EEEETTEEEEE-SSEEEEEEE-TTS-EEEEEEEE-SS-EEEEEEETTEEEEEESSS-EEEEEE-SSS--EEEEEEESS---EEEEEEE--SSS. CS
      CPSF_A   93 vtalaefqGrllvgvgqkvrvydlgedktLlrkafldtqlyvvslkvlgnriivgDlmkSvtfveydeenyklilfardtqkrwvtaaeflvdged. 188 
                  v+ ++e++Gr+lv ++qkv+v+d +ed++++++afld+++++ ++k++g+++i+gD+m++++f+++d+e+y++i ++++++k +++++ef+v+g+d 
  CCD24073.1 1116 VSTVCEISGRFLVNQSQKVMVRDAQEDNSVVPVAFLDIPVFINDAKSFGDFLILGDAMQGLHFIGFDAEPYRMINLGKSVTKFETVSVEFVVNGGDl 1212
                  ************************************************************************************************* PP

                  EEEEEETTSEEEEEE--TTSGGGTTTT.EEEEEEEEE-SS----E...EEEE...SSS--S......-EEEEEE-TTS-EEEEEE.--HHHHHHHHH CS
      CPSF_A  189 tvlvaDkfgnlfvlrydpeasessdgdprleeraefhlgeivtslrkgslvp..geaesss......spqllyatldGsigllvPliseeeyrrlqa 277 
                  +++++D+++ l+vl+y+p++ +s++g+ +l ++++f+l + ++sl    l+p  +e+e         ++q++ +++dGsi+ ++P + e++yrrl+ 
  CCD24073.1 1213 YFALTDRNNILHVLKYAPDELNSLSGQ-KLVHCSSFNLFSGNSSL---LLLPknEEFE--DtknaplTFQTIGGQVDGSIFKVIP-LREDTYRRLYV 1302
                  ***************************.*****************...8888643333..2368899******************.*********** PP

                  HHHHHHHHS--SSS--HHHHS---..----.....---EEHHHHHHHH CS
      CPSF_A  278 LqqqLrkelkhlgGldhrafRsyyspksee....vkgviDgdllerfl 321 
                  +qq++ +++++lgGl++r+ R  ++   ++    +++++D+++++rf+
  CCD24073.1 1303 IQQHMNDKEPQLGGLNPRMERLSNE--YYQlchvMRPMLDFNIIRRFS 1348
                  ***********************84..566789**************7 PP

>> HPS3_N  Hermansky-Pudlak syndrome 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0012        10      44      85 ..     587     627 ..     568     650 .. 0.84
   2 ?    3.6   0.0    0.0045        41       7      61 ..     674     728 ..     669     736 .. 0.81
   3 ?   -2.3   0.0      0.29   2.6e+03     139     174 ..    1119    1153 ..    1115    1161 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0012
      HPS3_N  44 leeeeckvlcrfstvdkvlkiaysesGdyvatlEeknkreda 85 
                 + ++ +++  +f +v ++++++ +++ +y++t  + ++++d+
  CCD24073.1 587 V-QPIVEKALKFISVTQIWNLKIKNKDKYLVTTDSTKSKSDI 627
                 3.48889999************************99998754 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0045
      HPS3_N   7 nFksqevvsveqeptavcaagdkLlvatesgcvevydleeeeckvlcrfstvdkv 61 
                 nF+  + ++ + e++ v + + ++l+++++g + +y+l+  ++++l+r+   d  
  CCD24073.1 674 NFRRLTAIKFDFEVVHVSVMDPYILITVSRGDIKIYELDATHKRKLFRVDLPDIL 728
                 67777777788888888888878***************99999999988766655 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.29
      HPS3_N  139 cCqvtgnllvgvkkklslfrlkvktqdiselkllDf 174 
                   C+++g+ lv   +k+++  ++  + ++  + +lD+
  CCD24073.1 1119 VCEISGRFLVNQSQKVMVRDAQEDN-SVVPVAFLDI 1153
                  5888888888888888776666633.4444566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 9496.21
//
Query:       CCD24074.1  [L=204]
Description: hypothetical protein NDAI_0C04140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   14.0   0.2      0.085   12.9   0.1    1.6  2  DUF1743   Domain of unknown function (DUF1743)
       0.11   12.4   0.9       0.17   11.7   0.9    1.5  2  PAZ       PAZ domain


Domain annotation for each model (and alignments):
>> DUF1743  Domain of unknown function (DUF1743)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   9.4e-06     0.085      21      66 ..      57     103 ..      42     105 .. 0.79
   2 ?   -3.0   0.0      0.82   7.4e+03      60      75 ..     171     185 ..     169     187 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.4e-06
                 EEEEEEEE-GGGTT..---EEHHHHHHHHHHHTTCECTSEBTTTTCEC CS
     DUF1743  21 tyEllaYreperwg..erevdeesvieadektypetfdnvDlshklvv 66 
                 ++ l+ Y + e +   e +vde sv+e de++ p ++d+ Dl++++v 
  CCD24074.1  57 YF-LMHYHKYELTAntEPCVDETSVVEEDEHKNPMMIDTSDLQKNRVT 103
                 34.677877765544899**************************9985 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.82
                 TTTTCECCS-STTSSE CS
     DUF1743  60 lshklvvlvPhtpdpv 75 
                 l+h++++l+P  ++pv
  CCD24074.1 171 LEHDTTLLYP-INNPV 185
                 6899999999.66666 PP

>> PAZ  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.9   1.9e-05      0.17      59      94 ..      47      86 ..      27     162 .. 0.78
   2 ?   -2.3   0.0       0.4   3.6e+03      25      36 ..     129     140 ..     107     177 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
                CCTTCT..CECCHHHHCCT-.--ST-TT--EEEEEE......S CS
         PAZ 59 pdkdkeneitfaeYfkkkYn.ieikdqdqplldvdk......k 94
                  +   ++++f +Yf  +Y+ +e++ +  p++d  +      +
  CCD24074.1 47 HER---QFQSFDDYFLMHYHkYELTANTEPCVDETSvveedeH 86
                333...79*********99647999999****99884433330 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.4
                 CCCTTBEEEETT CS
         PAZ  25 ealkgliVmtwy 36 
                 e++ g i + ++
  CCD24074.1 129 EEISGKIRKLKH 140
                 444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1548.44
//
Query:       CCD24075.1  [L=447]
Description: hypothetical protein NDAI_0C04150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-16   60.1   0.4    5.8e-16   58.5   0.2    2.0  2  GHMP_kinases_N  GHMP kinases N terminal domain
    3.8e-07   30.4   0.0    8.4e-07   29.3   0.0    1.5  1  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.2   6.4e-20   5.8e-16       5      66 .]     143     212 ..     141     212 .. 0.89
   2 ?   -2.6   0.0      0.75   6.7e+03      23      37 ..     306     320 ..     304     335 .. 0.67

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 6.4e-20
                     EESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHH.........HHHHHHHHHHHHHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   5 kseiPvgaGLGSSAAlavalvaAllallglslee.........aklaleaerlaqggngsggDvaasvyGg 66 
                      se+P ++GLGSSA l++ l++Al + ++ +l++         ++l+++++++aqg+ gsg+Dvaa+++G+
      CCD24075.1 143 ISEVP-KTGLGSSAGLVTVLTTALFSVFDPNLDLtiditlrkiHNLSQVSHCQAQGKIGSGFDVAAATFGS 212
                     699*9.**********************866533345678889**************************95 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.75
                     HHHHHHHHHTTEHHH CS
  GHMP_kinases_N  23 alvaAllallglsle 37 
                     a +a l+++++lsl 
      CCD24075.1 306 AFIASLNEMNQLSLT 320
                     678899999987762 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   9.4e-11   8.4e-07      10      68 ..     350     405 ..     341     422 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 9.4e-11
  GHMP_kinases_C  10 lellgellnlsqrselkavvgilppeleelleal.selGalgaklsGaGgGptvfalfkd 68 
                     +  +++  +l +r   +  ++i+pp+++ell+ +   +G+l a+++GaGg+++++ l+ +
      CCD24075.1 350 IAKIRDNFRLITR---ESGAEIEPPVQTELLDTCmNLNGVLVACIPGAGGYDAIALLT-T 405
                     4455555565566...559***************77778******************9.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3438.96
//
Query:       CCD24076.1  [L=214]
Description: hypothetical protein NDAI_0C04160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-26   91.9  19.2    7.4e-25   88.1  19.2    2.0  1  PIG-F     GPI biosynthesis protein family Pig-F
  ------ inclusion threshold ------
       0.12   11.9   9.4       0.97    9.0   9.2    2.2  1  TauE      Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> PIG-F  GPI biosynthesis protein family Pig-F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1  19.2   8.3e-29   7.4e-25       3     179 ..      48     211 ..      45     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 8.3e-29
       PIG-F   3 palllallalrfsalvadpvstLlsslivlallqvlyvvlclekkkk...kskkskivlallsllltlllatlllaillvlfGApllthlleTlllalh 98 
                 p++l++ll+l ++   +d  ++Ll  l+ l+  qv+y+vl+ +k +    k +k ++ l ++sl  +ll  +++  i+++lfGAp+l+h++e+ lla h
  CCD24076.1  48 PFHLIVLLYLYIY--HSDYSTELL--LLGLIPSQVFYLVLQFNKCTVygnKIIKINYPLVFISLGGALL-LSVPTLIIIILFGAPFLEHIKESWLLASH 141
                 6666666666443..455555554..677889999****999543335545555566666666655555.8888889********************** PP

       PIG-F  99 lslltvlpllyvlgvdaeawkevvsleepldevlggllgtvvGaWlGavPiPLDWdrpWQkwPitilvGaylGyvvgslig 179
                   +l+  ++  v+++d+++         ++++     ++ v+G Wl  v iPLDWdrpWQ+wPi++++G ylG++vg ++g
  CCD24076.1 142 CCFLAYPAMYSVFNCDFKV--------GMWKR---YYVMIVLGGWLSCVVIPLDWDRPWQAWPIPVVIGSYLGAFVGYTLG 211
                 ****************874........23444...567889************************************9876 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   9.2   0.00011      0.97      65     142 ..     109     209 ..      42     212 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00011
        TauE  65 lllllllgsli.GallGallllllpsellkllfgvlllllallmllrkkr........................srakgrerrptaillvligglvGll 138
                  +lll++++li  +l+Ga +l ++++++l++  +++l++ a++ +++                              +  ++++ +++ v+ig  +G++
  CCD24076.1 109 GALLLSVPTLIiIILFGAPFLEHIKESWLLASHCCFLAYPAMYSVFNCDFkvgmwkryyvmivlggwlscvvipL--DWDRPWQAWPIPVVIGSYLGAF 205
                 3555665555515666******************************77766788888888888888877776431..3445666666677777777777 PP

        TauE 139 sGll 142
                  G++
  CCD24076.1 206 VGYT 209
                 7764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1591.28
//
Query:       CCD24077.1  [L=825]
Description: hypothetical protein NDAI_0C04170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.2e-07   29.7   7.5    8.8e-07   28.9   7.5    1.4  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   7.5   4.9e-11   8.8e-07       2      31 ..      13      43 ..      12      51 .. 0.89

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 4.9e-11
                S-HHHHHCT---STSSSS-HHHHHCT.HHHC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkkln.leCt 31
                aC +Crk+K+ Cd+ kP C+nC k n  +C 
  CCD24077.1 13 ACVQCRKRKIGCDRVKPICGNCSKTNkGDCF 43
                9*************************77887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 5924.91
//
Query:       CCD24078.1  [L=228]
Description: hypothetical protein NDAI_0C04180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.2e-45  152.9   0.1    1.1e-44  152.5   0.1    1.1  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.5   0.1     6e-49   1.1e-44       2     157 ..      36     193 ..      35     194 .. 0.89

  Alignments for each domain:
  == domain 1  score: 152.5 bits;  conditional E-value: 6e-49
  Pro_isomerase   2 vdietss..kGrivieLfadkaPktvenFlklvkeg....fYdgttFhRvikgfmvqgGdptgktsageqekkggesi..raipdEitsklkh.kr 88 
                    +di++++   Gri++ Lf+  +PktvenF +l+ ++     Y  ++FhRvi++ m+qgGd+t+ +   +    ggesi   +++dE+ ++++h ++
     CCD24078.1  36 FDINHGEdhIGRIEFGLFGVVVPKTVENFYELTISEdpkmGYVDSIFHRVIPDLMIQGGDFTNRDG--T----GGESIfgSTFEDEN-FEITHdEA 124
                    5676765667***********************8667777********************988844..3....4454545699****.89999789 PP

  Pro_isomerase  89 GalamartgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetde..erpkknvkivsae 157
                    G+l+ma++g  ++++gsqFfItl+++p+l++k++vFGkV++Gm+vve i++v++d   ++p k+v+iv+++
     CCD24078.1 125 GLLSMANRG--EDTNGSQFFITLSPTPWLNNKHVVFGKVINGMEVVEYIARVDRDMktNKPLKDVTIVECG 193
                    ********8..5****************************************999999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1840.41
//
Query:       CCD24079.1  [L=192]
Description: hypothetical protein NDAI_0C04190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-25   88.2   0.0    8.9e-25   87.3   0.0    1.4  1  HIT       HIT domain
     0.0013   19.2   0.0     0.0023   18.4   0.0    1.4  1  DcpS_C    Scavenger mRNA decapping enzyme C-term binding


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.0     1e-28   8.9e-25       7      97 ..      21     112 ..      17     113 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 1e-28
                 CEEEE-SSEEEEE-SS-SSSSEEEEEESS.TGCSGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCCEEEEEEESGGGT-SSSS-EEEEEEC-T CS
         HIT   7 tvvyeddlvlafldidpkapghlLvipkk.hlselhdlteeelakllsavkkvakalqkkfknkglrvvinngahagqsvahlHiHviprre 97 
                 +v+y+ ++++a+++ +p +pgh+Lv+p + ++ el+dlt ee ++++++v+ ++  +++++k+++l++ i++g++agqsv+hlH+H+ipr++
  CCD24079.1  21 QVFYKSKYSYALVNLRPIVPGHVLVVPLRtTAYELNDLTLEESQDYFRTVQLIHGFIKWHYKADSLNISIQDGPEAGQSVPHLHTHIIPRYR 112
                 89*************************9989**********************************************************986 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.6e-07    0.0023      16     100 ..      22     108 ..      14     117 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.6e-07
                 EEEE-SSEEEEE-SS-SSSEEEEEEESS.---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T.-EEEEE--SCCCT--S-S--EEEE CS
      DcpS_C  16 vvyedekfvvlkDikpkaklhllvipkr.dikslrdLtkehlpllkemrekakkvieekyne.vdaeelrvgvhyqPsvyhlHlHvi 100
                 v y+++   +l  ++p  + h+lv+p r    +l+dLt e+ +   + ++ +   i+ +y++      ++ g ++ +sv hlH H+i
  CCD24079.1  22 VFYKSKYSYALVNLRPIVPGHVLVVPLRtTAYELNDLTLEESQDYFRTVQLIHGFIKWHYKAdSLNISIQDGPEAGQSVPHLHTHII 108
                 55666667777778888899********9999***********999**************55322223455777888*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1586.22
//
Query:       CCD24080.1  [L=525]
Description: hypothetical protein NDAI_0C04200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1355  (0.0755759); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3659.36
//
Query:       CCD24081.1  [L=723]
Description: hypothetical protein NDAI_0C04210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-16   60.9  20.6    1.3e-16   60.9  20.6    3.2  4  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
    0.00015   21.7   0.0    0.00036   20.4   0.0    1.7  1  MIR       MIR domain


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.2   0.00039       3.5      24      55 ..      57      88 ..      27      91 .. 0.82
   2 !   60.9  20.6   1.5e-20   1.3e-16      81     237 ..      92     248 ..      88     253 .. 0.96
   3 ?   -4.6   2.3       1.5   1.3e+04     192     240 ..     617     673 ..     607     676 .. 0.63
   4 ?   -3.9   0.3      0.93   8.4e+03       8      36 ..     695     721 ..     690     722 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00039
         PMT 24 devhfgkfasdYlehsffmdvhpplgkmllal 55
                 e + ++ + +Y e++ff+ +hp lg +l++l
  CCD24081.1 57 NEKDLYQAITYYKEKKFFLNEHPLLGIQLYSL 88
                4566778899********************98 PP

  == domain 2  score: 60.9 bits;  conditional E-value: 1.5e-20
         PMT  81 pyvslRlfsallgslivplvyltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkferkapfsrswwlwllltgvalglav 179
                 +   + ++s + g+ ++ +vylt +++  s l++ l al   + + +  +  +i l+ +  ff+  ++++++ + +++++s++w+  ll++ v+lg+ +
  CCD24081.1  92 NIKHMTWLSSMSGLISLSFVYLTQRKMSNSTLISTLGALSISILPVYQSELSMISLNTIQWFFLSITLFSMTNMLSSKQLSKNWYYHLLALSVSLGCNM 190
                 667899*********************************************************************999********************* PP

         PMT 180 svKwvglftvllvgllliwelwqllgdkslllksivkhllaralaliviPvtlylavf 237
                 s+K +g++t + ++++++ + wql+ d   ++++i+k++++++l li+iPv ++l  +
  CCD24081.1 191 STKLIGIMTWFFIFFVICKHSWQLITDIRISTYEIMKYIIITSLSLIIIPVSIFLGSY 248
                 ******************************************************9865 PP

  == domain 3  score: -4.6 bits;  conditional E-value: 1.5
         PMT 192 vgllliwelwqllgdkslllksi........vkhllaralaliviPvtlylavftvh 240
                 vg+++++  +  +  k+ ++k+         ++++ + + +l++  + +y++++ +h
  CCD24081.1 617 VGIITFIINVDFQIMKWNPWKKVahtpsinkLIYYQFGIECLFGWFIHFYIFTKSPH 673
                 555555555555555555555445555556688888888888877777777777666 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 0.93
         PMT   8 llirlwrlslpnsvvfdevhfgkfasdYl 36 
                  ++rl++ s+ +s +   +++g f  +Yl
  CCD24081.1 695 TISRLYNWSVMKSSIIMVLYYGGF--YYL 721
                 578999999999999999999999..775 PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.1e-08   0.00036      66     175 ..     380     498 ..     283     506 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.1e-08
         MIR  66 ikwgkvyRlkHlaTgryLaseeekksplseseddqkevsayglegfegd............nDkveifekksttgmksaklv.prdsyvrlqHvvtgcw 151
                 +++ +++R++   Tg+ L s    k+p+se+ + + e s+ g  +  gd            +  ++i +kk   g + a +  pr s ++l  v  gc 
  CCD24081.1 380 LEDLQKIRIRNKLTGKLLRSSSA-KAPVSEQ-EYNSEISCTGDSSYLGDsdetwqvdyfgmKLSKNIRKKKRRDGFEGALIIpPRISLLKLDNVGQGCT 476
                 445567****************9.9999988.999999999999998987677776665544449999999999999999999**************** PP

         MIR 152 Lhstsvklkkekfekvqqkvicak 175
                 L  + +kl+++++    q+vic +
  CCD24081.1 477 LLGHDTKLPEWGQF--NQEVICIR 498
                 ***********999..9*****76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4937.79
//
Query:       CCD24082.1  [L=202]
Description: hypothetical protein NDAI_0C04220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-43  146.8   2.6    4.9e-43  146.8   2.6    1.9  2  Med21            Subunit 21 of Mediator complex
     0.0036   17.4   0.9     0.0036   17.4   0.9    2.1  2  Med9             RNA polymerase II transcription mediator com
     0.0052   16.6   0.0       0.42   10.4   0.0    2.1  1  Pox_polyA_pol_C  Poxvirus poly(A) polymerase C-terminal domai


Domain annotation for each model (and alignments):
>> Med21  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.8   2.6   8.2e-47   4.9e-43       1     140 [.       1     127 [.       1     131 [. 0.96
   2 ?    0.2   0.2      0.14   8.3e+02      53      76 ..     168     194 ..     135     201 .. 0.56

  Alignments for each domain:
  == domain 1  score: 146.8 bits;  conditional E-value: 8.2e-47
       Med21   1 MaDrLTqLQdcldqLaeqfyatlgylntshdpsplseqdpsspsaapalakipqeekeepepdspeefaatqrelardlilkeqqIeyLIssLPgigss 99 
                 M+DrLTqLQ+cldqL+eqf+atl+y++++h ++pl+ ++p +++++++ a             +p+ef++t++el++d+ilk++q  +LI+sLPg+++s
  CCD24082.1   1 MTDRLTQLQICLDQLVEQFCATLNYIDKNHGFEPLNTSEPLMSDKHATVA-------------PPDEFSNTIDELSTDIILKTRQTMKLIDSLPGVDVS 86 
                 9***********************************99998888888665.............689********************************* PP

       Med21 100 eeeqeerikeLeeelreveeereekvkekeellkkveellr 140
                  eeq+++i++L+++l +vee + +++keke+ll++v++l++
  CCD24082.1  87 AEEQLHKIDSLQKKLVQVEEAKIQAIKEKENLLTQVDGLID 127
                 ***************************************97 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.14
       Med21  53 p...qeekeepepdspeefaatqrela 76 
                 +    + ++++ p++++++++t++ l 
  CCD24082.1 168 NttdISINNATLPTNQNNVENTIQRLN 194
                 122322345555666666666666664 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.9     6e-07    0.0036      33      68 ..      68     103 ..      50     122 .. 0.83
   2 ?   -2.7   0.1       1.1   6.6e+03      19      32 ..     181     194 ..     173     196 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6e-07
        Med9  33 hkLkkarelirelpgidrsveeqeaeieeleeqlak 68 
                 +k  +  +li++lpg+d s eeq+ +i++l+++l +
  CCD24082.1  68 LKTRQTMKLIDSLPGVDVSAEEQLHKIDSLQKKLVQ 103
                 566667789**********************99865 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.1
        Med9  19 lsskdletktgelr 32 
                  +++++e+ ++ l+
  CCD24082.1 181 TNQNNVENTIQRLN 194
                 45666666666665 PP

>> Pox_polyA_pol_C  Poxvirus poly(A) polymerase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0     7e-05      0.42      11     100 ..       2     199 ..       1     201 [. 0.56

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7e-05
                      HHHHHHHHH-THHHHHHHHHHHHH...................................................................... CS
  Pox_polyA_pol_C  11 idRledlaekmekllarlkTLLey...................................................................... 34 
                      +dRl +l+  +++l  +++  L+y                                                                      
       CCD24082.1   2 TDRLTQLQICLDQLVEQFCATLNYidknhgfeplntseplmsdkhatvappdefsntidelstdiilktrqtmklidslpgvdvsaeeqlhkid 95 
                      5888888888888888888888885555555555555555555555555555555555555555555555555555555555555555555555 PP

                      ........................................HHHHHT.---SS--TS-S--EEEETTTTEEEEEGTTT.SSSSEEEEES-HHHHH CS
  Pox_polyA_pol_C  35 ........................................vrydygmivldgesdimekksaldkekriikvdikayalstkkivvylDenkLs 88 
                                                              +r +    v+d+ +   +  ++  +++  ++ ++++ ++s+++++    +n+++
       CCD24082.1  96 slqkklvqveeakiqaikekenlltqvdglidyfvtgiasTRHNNVGEVADSMT--TPATTTTGTANTEMNTEVNTTDISINNATLPTNQNNVE 187
                      555555555555555555555555555555555666663322222223333333..34444556666666677777777777777777777777 PP

                      HHHHHTT-.--- CS
  Pox_polyA_pol_C  89 kdilklnasdea 100
                      ++i +ln+++++
       CCD24082.1 188 NTIQRLNTTEIN 199
                      777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1419  (0.0791455); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1512.05
//
Query:       CCD24083.1  [L=330]
Description: hypothetical protein NDAI_0C04230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-17   63.8  13.4    1.2e-17   63.8  13.4    2.9  3  FYVE          FYVE zinc finger
    2.6e-07   30.9   4.3    2.6e-07   30.9   4.3    4.2  3  zf-RING_2     Ring finger domain
    0.00022   20.9   8.9     0.0011   18.6   8.9    2.3  1  zf-RING_11    RING-like zinc finger
     0.0037   17.3   3.9     0.0037   17.3   3.9    3.9  5  zf-RING_UBOX  RING-type zinc-finger
     0.0046   17.5   0.1      0.028   14.9   0.0    2.3  2  DUF3657       Protein FAM135
     0.0057   16.5   4.6     0.0057   16.5   4.6    4.7  5  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8  13.4   3.9e-21   1.2e-17       2      67 ..      51     122 ..      50     123 .. 0.85
   2 ?   -1.2   0.1      0.75   2.2e+03      28      34 ..     174     180 ..     150     234 .. 0.68
   3 ?    1.5   0.5      0.11   3.2e+02       8      47 ..     264     302 ..     244     318 .. 0.69

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 3.9e-21
                 ---...--SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EE......GGGTEEEEEEE-HHHHHHHH CS
        FYVE   2 kwkddsevkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvall......ekeaeeksvrvCkeClaels 67 
                  w++d++ ++C +C++kF++l rrhhCr+CG+++Ce+C+s++v+         ++ ee ++r+C+ C+++l 
  CCD24083.1  51 IWQPDEKFNRCFNCSRKFTFLLRRHHCRCCGNIYCESCCSNFVDFDkskvklLRRFEEPPYRICDLCFKDLM 122
                 5**************************************9988766444444455666777*******9985 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.75
                 -TTT--E CS
        FYVE  28 CrlCGkv 34 
                 C +C  +
  CCD24083.1 174 CPVCNLI 180
                 2222222 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.11
                 --SB-TTT--B--SS..S--EE-TTT--EE-STTS-EEE.EE CS
        FYVE   8 evkkCeiCakkFsll..rrrhhCrlCGkvvCekCssklvall 47 
                 + ++C+iC +  ++   + r     C  v+ ++C ++ +++ 
  CCD24083.1 264 NLQECPICFEDIEIGekVARLE---CLCVFHYHCIKSWIKKK 302
                 5688999998887631233333...44466666666655554 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.2  17.1         6   1.8e+04       3      36 ..      61      95 ..      59     118 .. 0.68
   2 ?    1.8   0.1       0.1   3.1e+02      40      44 .]     174     178 ..     162     200 .. 0.78
   3 !   30.9   4.3   8.6e-11   2.6e-07       2      38 ..     267     303 ..     266     325 .. 0.85

  Alignments for each domain:
  == domain 1  score: -6.2 bits;  conditional E-value: 6
   zf-RING_2  3 CpICleel..ssadsvlllpCgHvfhreClerwlrs 36
                C  C  ++    +++ +++ Cg +++++C ++++  
  CCD24083.1 61 CFNCSRKFtfLLRRHHCRC-CGNIYCESCCSNFVDF 95
                5566555533333445556.9999*****9887654 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.1
   zf-RING_2  40 CPlCr 44 
                 CP+C+
  CCD24083.1 174 CPVCN 178
                 77774 PP

  == domain 3  score: 30.9 bits;  conditional E-value: 8.6e-11
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrsss 38 
                 eCpIC+e+++ +++v +l+C  vfh++C++ w+++++
  CCD24083.1 267 ECPICFEDIEIGEKVARLECLCVFHYHCIKSWIKKKE 303
                 9***************999*778*********99876 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   8.9   3.7e-07    0.0011       1      29 []     267     295 ..     267     295 .. 0.99

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.7e-07
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHtFHfkCI 29 
                 eC IC e+++ g+++  l+C  +FH++CI
  CCD24083.1 267 ECPICFEDIEIGEKVARLECLCVFHYHCI 295
                 9***************************9 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       3.5   1.1e+04       5      16 ..      20      34 ..      19      34 .. 0.70
   2 ?   -4.3   8.2         6   1.8e+04      16      26 ..      80      90 ..      61     107 .. 0.68
   3 ?   -0.5   0.2      0.44   1.3e+03       1       5 [.     174     178 ..     174     186 .. 0.86
   4 ?   -3.2   0.0       3.1   9.2e+03      23      26 ..     196     202 ..     195     215 .. 0.53
   5 !   17.3   3.9   1.2e-06    0.0037       1      31 [.     268     302 ..     268     313 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.5
  zf-RING_UBOX  5 lelftdP..lv.lpC 16
                  +e+++ P  l  lpC
    CCD24083.1 20 QEVLNVPtqLTaLPC 34
                  688888887555688 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 6
  zf-RING_UBOX 16 CGHtFCreClw 26
                  CG ++C++C  
    CCD24083.1 80 CGNIYCESCCS 90
                  999******94 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.44
  zf-RING_UBOX   1 CpICl 5  
                   Cp+C+
    CCD24083.1 174 CPVCN 178
                   ****7 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 3.1
  zf-RING_UBOX  23 eCl...w 26 
                   +C+   +
    CCD24083.1 196 DCIrnaE 202
                   8995431 PP

  == domain 5  score: 17.3 bits;  conditional E-value: 1.2e-06
  zf-RING_UBOX   1 CpIClelft..dPlv..lpCGHtFCreCl..w.elsks 31 
                   CpIC+e+ +  +  v  l+C  +F+ +C+  w +  k+
    CCD24083.1 268 CPICFEDIEigEK-VarLECLCVFHYHCIksWiK--KK 302
                   ********87633.43369**********76541..22 PP

>> DUF3657  Protein FAM135
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.5e-06     0.028       3      48 ..     114     176 ..     113     177 .. 0.96
   2 ?   -1.4   0.0       1.2   3.6e+03      40      52 ..     262     274 ..     259     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.5e-06
     DUF3657   3 vELmfadlkn................enqkeepelqndlksvstrklkin.nalegiheyvPv 48 
                 ++L+f dl++                en+++++++++++ ++st +  +   ++ g   ++Pv
  CCD24083.1 114 CDLCFKDLMKlayitrgsgesddsmsENSENNDSDSQQSHQMSTVNSHLVaVPSAGEETFCPV 176
                 8*************************9999********************999*********9 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.2
     DUF3657  40 egiheyvPvlFde 52 
                 eg+ + +P+ F++
  CCD24083.1 262 EGNLQECPICFED 274
                 6777779****97 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.5  10.1         6   1.8e+04      22      33 ..      61      80 ..      58      88 .. 0.64
   2 ?   -5.5   8.5         6   1.8e+04      17      32 ..      80      95 ..      75     102 .. 0.74
   3 ?   -1.5   0.1      0.79   2.4e+03      22      29 ..     114     121 ..     111     128 .. 0.61
   4 ?   -0.2   0.0      0.31   9.3e+02      37      41 .]     173     177 ..     161     184 .. 0.78
   5 !   16.5   4.6   1.9e-06    0.0057       1      34 [.     268     302 ..     268     311 .. 0.88

  Alignments for each domain:
  == domain 1  score: -7.5 bits;  conditional E-value: 6
                -CHHHHHHHHC........T CS
    zf-C3HC4 22 CskCirkilks........r 33
                C++C rk +          +
  CCD24083.1 61 CFNCSRKFTFLlrrhhcrcC 80
                99999998887543333333 PP

  == domain 2  score: -5.5 bits;  conditional E-value: 6
                TS--B-CHHHHHHHHC CS
    zf-C3HC4 17 CkHsfCskCirkilks 32
                C+  +C++C ++ +++
  CCD24083.1 80 CGNIYCESCCSNFVDF 95
                6667899999888776 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.79
                 -CHHHHHH CS
    zf-C3HC4  22 CskCirki 29 
                 C  C + +
  CCD24083.1 114 CDLCFKDL 121
                 55554444 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.31
                 --TTT CS
    zf-C3HC4  37 kCPlC 41 
                  CP+C
  CCD24083.1 173 FCPVC 177
                 47777 PP

  == domain 5  score: 16.5 bits;  conditional E-value: 1.9e-06
                 -TTT-S--SS-E...E-TTS--B-CHHHHHHHHCTS CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCirkilksrk 34 
                 CpiC+e +++      leC   f+++Ci++++k+ k
  CCD24083.1 268 CPICFEDIEIGEkvARLECLCVFHYHCIKSWIKK-K 302
                 *******998877799*****************5.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1261  (0.070333); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2386.37
//
Query:       CCD24084.1  [L=465]
Description: hypothetical protein NDAI_0C04240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-50  170.9   2.5      6e-50  170.0   2.5    1.4  1  Brix           Brix domain
  ------ inclusion threshold ------
      0.018   14.9   4.2      0.036   13.9   4.2    1.5  1  DUF4718        Domain of unknown function (DUF4718)
       0.46   10.9   5.1        1.1    9.7   5.1    1.6  1  DUF4692        Regulator of human erythroid cell expansion (R


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   2.5     1e-53     6e-50       5     193 .]      37     351 ..      33     351 .. 0.92

  Alignments for each domain:
  == domain 1  score: 170.0 bits;  conditional E-value: 1e-53
                 -HHHHHHHHHHHHHCTTSEEEEEE.ECT-TTTHHHHHHH...-HHHHHHHH...HCTCSEEEEEE..SSTTEEEEEEEEECECTGGGSTTTS....... CS
        Brix   5 ssrlrqllkdlrslmkphtasflk.rnsnklkdlvelag...vthlellse...kndcslfvfelskkrPngptlefkvenyslmkdlkkak....... 89 
                 ++ l+ql+kd+r++m+phta +lk r+snklkd+v ++g   v+hl+++++   ++++sl+++++    P+gpt++f+v++ysl +d+kk         
  CCD24084.1  37 NHSLNQLVKDFRQIMQPHTAIKLKeRKSNKLKDFVVMCGplgVSHLFIFTQsekTGNVSLKIART----PQGPTITFQVTDYSLGRDIKKYLrrpksln 131
                 456*********************9999************************988888*******....*******************99999999*** PP

                 TS-TT---EEEEES..........HHH........HHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTTECEEEEEEEEEE........... CS
        Brix  90 ktefgsrPllvfng.........kenf........kllksllqdlFrvpkislkspklsglrrvvlftaaenqetdktisfRhYaikl........... 160
                 k ++  +Pllv+ng         +           k + s++q++F  p++++++++l+ ++rv++++ + +qet+  i +RhY i++           
  CCD24084.1 132 KEDVLDPPLLVLNGfntikkkddE--SnaakenaeKVVVSMFQNIF--PPLNPARTQLNTIKRVFMIN-K-DQETG-EITMRHYFIDIkdvdisknlnr 223
                 *************66666555541..055677779***********..********************.7.57778.8*********999999999999 PP

                 .....E..STTTTECT................................................................................... CS
        Brix 161 .....kksgkklpnleke................................................................................. 173
                      ++ +k++pnl+++                                                                                 
  CCD24084.1 224 lykskHNLSKSVPNLHRKedisslildhdlnaytsesevdddaivrvvdkkdirgkninmvqkkqsspenndedgdinmdgnaieenhdeeesivkkvv 322
                 9999988888999999989******************************************************************************** PP

                 .........T..EEEEEEESEEEEEEEEE CS
        Brix 174 .........kkerveLeEiGPrfdLklrk 193
                          +k++++L+E+GPr++Lkl+k
  CCD24084.1 323 veddtpvvpRKKAIRLTELGPRLTLKLVK 351
                 **999888769****************97 PP

>> DUF4718  Domain of unknown function (DUF4718)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   4.2     6e-06     0.036      67     152 ..     374     463 ..     351     464 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6e-06
     DUF4718  67 vfisrnfhtGrlqlqeekrkkee...aeikaikdhskeefcladkkviedpeetsvaakssvatlslstlisdsyysqsveaae.dwfsd 152
                 v i    h+ +++l+ee++k +e   a++ka+k+  k+      k+   + e+    +k+sv + + s + s+ +ys+  e+ + d +sd
  CCD24084.1 374 VRILEKRHAAKMKLKEERKKEQEaniAKKKAVKEAKKQRKLERRKARELEQENEDGENKQSVESSDESDSDSSDHYSDVPEDLDsDLYSD 463
                 56667789*****99998877662224679***99999988888888889999999**********************999876477777 PP

>> DUF4692  Regulator of human erythroid cell expansion (RHEX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.1   0.00019       1.1      29     107 ..     380     457 ..     371     464 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00019
     DUF4692  29 Rhiakeserllkaarlqapepspahksppaakelketraerstsvsepryrh.dsdtssdssdssdssspp.tsqatkdvn 107
                 Rh ak +   lk+ r +  e++ a+k+++   +++   + r+++  e    + + + s +ssd sds s+   s +++d++
  CCD24084.1 380 RHAAKMK---LKEERKKEQEANIAKKKAVKEAKKQRKLERRKARELEQENEDgENKQSVESSDESDSDSSDhYSDVPEDLD 457
                 4444433...445444444444333333222222222233333333333333467889*********55543777888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2538  (0.141558); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 3217.72
//
Query:       CCD24085.1  [L=504]
Description: hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-48  164.8   0.0    2.8e-48  164.0   0.0    1.4  1  DEAD             DEAD/DEAH box helicase
    9.1e-31  106.5   0.2    7.1e-30  103.6   0.1    2.6  3  Helicase_C       Helicase conserved C-terminal domain
    1.3e-06   28.5   3.3    3.5e-05   23.9   0.0    2.4  2  ResIII           Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.024   15.0   0.0       0.19   12.0   0.0    2.3  2  AAA_19           AAA domain
      0.025   13.8   0.0      0.025   13.8   0.0    2.2  1  ERCC3_RAD25_C    ERCC3/RAD25/XPB C-terminal helicase
      0.042   14.0   1.7       0.06   13.5   1.7    1.3  1  DDHD             DDHD domain
       0.14   12.4   0.0       0.14   12.4   0.0    2.8  3  GLTP             Glycolipid transfer protein (GLTP)
       0.18   11.5  10.5       0.34   10.6  10.5    1.4  1  FAM176           FAM176 family
       0.46    9.2   7.7       0.67    8.7   7.7    1.2  1  Tim54            Inner membrane protein import complex subuni
        1.2    7.2  13.4        1.7    6.7  13.4    1.1  1  DNA_pol_phi      DNA polymerase phi
        2.1    8.1  15.2        3.8    7.2  15.2    1.3  1  Pox_Ag35         Pox virus Ag35 surface protein
        2.2    8.5  10.5        3.8    7.7  10.5    1.3  1  CPSF100_C        Cleavage and polyadenylation factor 2 C-term
        3.5    7.3  10.7        5.9    6.6  10.7    1.3  1  DUF4637          Domain of unknown function (DUF4637)
        4.5    7.3   9.3        7.5    6.6   9.3    1.3  1  RP-C_C           Replication protein C C-terminal region
        5.3    7.1   8.6         10    6.1   8.6    1.4  1  TERB2            Telomere-associated protein TERB2
        7.9    5.6   5.9         11    5.1   5.9    1.2  1  Zip              ZIP Zinc transporter
        8.8    6.2  12.7         15    5.4  12.7    1.2  1  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
        8.8    5.2   8.1         15    4.4   8.1    1.3  1  DUF913           Domain of Unknown Function (DUF913)
        9.9    5.3  10.0         15    4.7  10.0    1.2  1  DUF4471          Domain of unknown function (DUF4471)


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   0.0   2.9e-51   2.8e-48       1     176 []     108     276 ..     108     276 .. 0.95

  Alignments for each domain:
  == domain 1  score: 164.0 bits;  conditional E-value: 2.9e-51
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 t+iQ+++ip +l+g+d+++ a+TGsGKT+af+ip+l+++++  +++   a i++PtreLa+q+ +++ ++++ +++r ++i+gg +  dq ++l ++++
  CCD24085.1 108 TPIQSKSIPPALKGHDIIGLAQTGSGKTAAFAIPILNSLWH--DQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDQARDLMRKPH 204
                 89*************************************98..89999**********************************************999** PP

                 EEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 ++++tpgrl+d+l +t+ ++l+++++lV+DEadrlld++f++ ++ril+ lp+      + r++ ++SAT++++++kl
  CCD24085.1 205 VIIATPGRLMDHLeNTKGFSLRKLKYLVMDEADRLLDMEFGPVLDRILKILPT------QGRTTYLFSATMTSKIDKL 276
                 *************77888*********************************42......33559********999886 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         7   6.6e+03      19      55 ..     155     195 ..     142     209 .. 0.59
   2 ?   -2.0   0.0       4.8   4.5e+03       5      33 ..     250     277 ..     247     295 .. 0.62
   3 !  103.6   0.1   7.5e-33   7.1e-30       3     111 .]     312     419 ..     310     419 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 7
                 EEEEESSHHHHHHHHHHHHHT.......TSTEEEESTTSTHHHH CS
  Helicase_C  19 ilifvntidrlekvklllekk.......gikvavlhgelpqner 55 
                 + i ++t++ +++   ++e++       g++++++ g ++  ++
  CCD24085.1 155 ACILAPTRELAQQ---IKETFdslgslmGVRSVCIVGGMNMMDQ 195
                 5667777775533...2222222334458888888887765554 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.8
                 HHHHHHHHTTTTSEEEEEESSHH.HHHHHH CS
  Helicase_C   5 allellkleeeggkilifvntid.rlekvk 33 
                 ++l++l    +g+++++f+ t + +++k++
  CCD24085.1 250 RILKIL--PTQGRTTYLFSATMTsKIDKLQ 277
                 455555..6788888999888887776522 PP

  == domain 3  score: 103.6 bits;  conditional E-value: 7.5e-33
                 HHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHH CS
  Helicase_C   3 leallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyi 101
                    l++ll +e +g+ ++if++t+ ++e+++ l++  ++++++lhg+l+qn+r  +l+ f++g+ ++L+atdva+rG+dip+v+ Vin+d+p + +syi
  CCD24085.1 312 NTFLIYLL-NEYIGKSTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRKTILVATDVAARGLDIPSVDIVINYDIPVDSKSYI 409
                 56788999.999*************9987555555559************************************************************* PP

                 HHHTTSSSTT CS
  Helicase_C 102 qriGRtgRag 111
                 +r+GRt+Rag
  CCD24085.1 410 HRVGRTARAG 419
                 ********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   8.4       6.3     6e+03      57     104 ..      27      76 ..       6      92 .. 0.66
   2 !   23.9   0.0   3.7e-08   3.5e-05      31     168 ..     128     268 ..      88     271 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.3
                 EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.........- CS
      ResIII  57 flflvprkslleqtleefkkflseaykeigkkvsgdkkka..kekdstnk 104
                 +  l ++k+l eq ++e +k ++++ ++++ k++++++k+  +e+d++++
  CCD24085.1  27 IRALENQKKLKEQSEQESSKESEDEEQDENAKTNKRSHKSkqEEEDEDEN 76 
                 55577899999999999999999998885555555555552223333333 PP

  == domain 2  score: 23.9 bits;  conditional E-value: 3.7e-08
                 ESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SEEEEEHHHHHHTH........H CS
      ResIII  31 maTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkkilvttiqsldadseeeeeesee 127
                 + TG+GKT    + +  +l++ ++   + +l+p+++l +q +e+f ++ s    +   +v g + +   +    + +++++t  +l  ++    e+++ 
  CCD24085.1 128 AQTGSGKTAAFaIPILNSLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDqARDLMRKPHVIIATPGRLMDHL----ENTKG 222
                 57******998788889999988888*******************99999887665555555555552445578899*************....78888 PP

                 HHTTT-SEEEEETGGGTTS.T...TTHHHHHT---..SEEEEEESS CS
      ResIII 128 llrdrfdviiiDEaHrlgakk...swreilekfke..avllglTAT 168
                 ++  + +++++DEa rl +++      +il+ ++    +   ++AT
  CCD24085.1 223 FSLRKLKYLVMDEADRLLDMEfgpVLDRILKILPTqgRTTYLFSAT 268
                 9999999*********999844446666666654333444445555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00021      0.19       7     114 ..     118     239 ..     111     265 .. 0.61
   2 ?    0.3   0.0      0.83   7.9e+02      43      81 ..     325     361 ..     292     474 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00021
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae..............atTiHrlalldfddlltealell 91 
                 alk + ++ +a  G+GKT      +   ++  ++ p    ++a+t+  a++++e  ++lg                                ++a  l+
  CCD24085.1 118 ALKGHDIIGLAQTGSGKTAAFAIPILNSLWHDQQ-PYYACILAPTRELAQQIKETFDSLGSLmgvrsvcivggmnmM---------------DQARDLM 200
                 5666667778999******999988888887765.689999*************99776554444443322222220...............2222222 PP

      AAA_19  92 e................eaeeekklqeeellivDEfqdv 114
                 +                e+++   l++ ++l+ DE+  +
  CCD24085.1 201 RkphviiatpgrlmdhlENTKGFSLRKLKYLVMDEADRL 239
                 223333335555555543344445544457888887654 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.83
      AAA_19  43 eeillvaftgrAakelrerlaalgaeatTiHrlalldfd 81 
                 ++ ++ + t+  a++++  ++ l+ +at +H+   l+ +
  CCD24085.1 325 KSTIIFTRTKANAERISGLCNLLEFNATALHGD--LNQN 361
                 567888999999999999998889999999954..3333 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.7e-05     0.025      79     154 ..     348     421 ..     271     433 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.7e-05
  ERCC3_RAD25_C  79 klkkpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLrakkk 154
                    +++ + ++G+ ++++r+  l+ fk+  k+  ++   v+   +D+P+  ++i  +  + s+     r+Gr  ra ++
     CCD24085.1 348 EFNATALHGDLNQNQRTGALDLFKAGRKT-ILVATDVAARGLDIPSVDIVINYDIPVDSKS-YIHRVGRTARAGRS 421
                    4677889*****************98664.455679****************999999975.58999999998775 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   1.7   6.4e-05      0.06     103     163 ..      16      77 ..       2     202 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.4e-05
        DDHD 103 qkvsglvsslsa.llnrslelaeeesaslaessksherasesskasqeskaaesstasssak 163
                 ++ ++l+++++  +l+++++l+e+++++++++s+++e++++++++++++k++++++ + +++
  CCD24085.1  16 NELTSLAAKIKIrALENQKKLKEQSEQESSKESEDEEQDENAKTNKRSHKSKQEEEDEDENS 77 
                 22222333332234444455555444444444444443333333333333222222222221 PP

>> GLTP  Glycolipid transfer protein (GLTP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       8.8   8.3e+03       9      26 ..     164     181 ..     162     194 .. 0.82
   2 ?   12.4   0.0   0.00015      0.14       7      57 ..     245     301 ..     242     305 .. 0.89
   3 ?   -0.7   0.0       1.6   1.5e+03      29      71 ..     320     363 ..     309     375 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 8.8
                 HHHHHHHHHHHT-GGGGG CS
        GLTP   9 acrelvklfdllGsafsf 26 
                 +++++ + fd+lGs++ +
  CCD24085.1 164 LAQQIKETFDSLGSLMGV 181
                 678888999999998865 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00015
                 HHHHHHHHHHHHHT-GGGGGHHHHTHHHHHHHHHHTT..........T-SBHHHHHH CS
        GLTP   7 leacrelvklfdllGsafsfvksDvegniekleeaykknpe......eystleslve 57 
                   + + ++k++ + G++  ++++ ++++i+kl++a+++np       +y+t+ +lv+
  CCD24085.1 245 GPVLDRILKILPTQGRTTYLFSATMTSKIDKLQRASLTNPVkcavsnKYQTVDTLVQ 301
                 55678999*******************************888899998999999886 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.6
                 HHTHHHHHHHHHHTT....T-SBHHHHHHHHHHTT-TT...STT CS
        GLTP  29 sDvegniekleeaykknpeeystleslveaEkeeglakk.kkke 71 
                 +++ g+ +++ ++ k+n e++s l +l+e ++ + + +  ++++
  CCD24085.1 320 NEYIGKSTIIFTRTKANAERISGLCNLLEFNATALHGDLnQNQR 363
                 78889999999999999999999999999887665555533444 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  10.5   0.00036      0.34      41     111 ..      21      90 ..      17      95 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00036
      FAM176  41 lviriscrkdlerlkkkkkklkeesekasededeeeeeeeedsseseaeeelsefertlsvnvftsaeele 111
                 l ++i  r+ le++kk k++ ++es+k+sede+++e+ ++++ s+++ +ee +e e + s+++f+   el+
  CCD24085.1  21 LAAKIKIRA-LENQKKLKEQSEQESSKESEDEEQDENAKTNKRSHKSKQEEEDEDENSTSYETFETFSELN 90 
                 555565555.4556666666667776777777766666655555555555555555555999999998886 PP

>> Tim54  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   7.7   0.00071      0.67     203     268 ..      32      98 ..      14     130 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00071
       Tim54 203 eeeeeeeeekeeeeeeeeeeeeekeeekeeekeeeeeeeekekkkkvpkpyispedYasaelppe...i 268
                 ++++ +e++++e+++ e +e+ee++e+++++k+++++++e+e++ +  ++y + e +++ +l pe    
  CCD24085.1  32 NQKKLKEQSEQESSK-E-SEDEEQDENAKTNKRSHKSKQEEEDEDENSTSYETFETFSELNLVPEliqA 98 
                 222222222222222.2.223333333333334444444444456677778888888888887774440 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  13.4    0.0018       1.7     615     678 ..      15      78 ..       2     106 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0018
  DNA_pol_phi 615 eegLellldvLearenkegqaelfedededeeddeeeeeeddeededse.edddeeesdedeede 678
                  +++L +l + ++ r  +e+q++l e+++++ ++++e+ee+d++ ++++    +++ee+dede++ 
   CCD24085.1  15 NNELTSLAAKIKIR-ALENQKKLKEQSEQESSKESEDEEQDENAKTNKRsHKSKQEEEDEDENST 78 
                  67888888888888.55777877644444444444433333333333332222222222222222 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  15.2     0.004       3.8      64     138 ..      28      98 ..       4     105 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.004
    Pox_Ag35  64 pakkekkkkeeekeeaaeeeeledseedeenendedeseesvqaeeeksnesteddadeldeSdLkvatenIikd 138
                  a++++kk +e++e++  +e  +++ee++en++ ++ s++s+q+ee++ ++s +  +     S+L+++ e I  +
  CCD24085.1  28 RALENQKKLKEQSEQESSKE--SEDEEQDENAKTNKRSHKSKQEEEDEDENS-TSYETFETFSELNLVPELIQ-A 98 
                 33333333333333333333..566666778999999999999999988887.44444556799999987653.4 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  10.5     0.004       3.8      18      83 ..      15      79 ..       5     101 .. 0.46

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.004
   CPSF100_C 18 glevatvtgeleieeeaeeaeeeekeeeeee.eeeeeeeeeaskkqkl.aeksekeaseeeseekkes 83
                + e++ + ++++i++ +++++ +e++e+e++ e+e+ee++e+ k++k  ++++++e++e+e+   ++s
  CCD24085.1 15 NNELTSLAAKIKIRALENQKKLKEQSEQESSkESEDEEQDENAKTNKRsHKSKQEEEDEDEN---STS 79
                47888888999987764333333333332220222222222223333311222222222222...222 PP

>> DUF4637  Domain of unknown function (DUF4637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  10.7    0.0062       5.9      16      65 ..      36      81 ..      23      98 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0062
     DUF4637 16 eveeeeaeeeseeedeeedraeeesaaegeeesreaeeaegrekgsvsys 65
                 +e+ e+e+++e    +ed++++e+a+ ++ ++++ +e+e ++++s sy 
  CCD24085.1 36 LKEQSEQESSKE----SEDEEQDENAKTNKRSHKSKQEEEDEDENSTSYE 81
                222222222222....2234455666666677777777777788888886 PP

>> RP-C_C  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   9.3     0.008       7.5      30     114 ..      16     102 ..       3     112 .. 0.40

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.008
      RP-C_C  30 eelealreevenal.esalkaenssanes....qnerhiqnsnpdsssese.pasekereekeaaaasaeaepsek.ksv.plglvlkacPei 114
                 +el++l+++++ +  e+++k +++s +es    ++e++ +n ++   ++++ +++++e++e e++++ ++ e   + +++  ++ +++ac ++
  CCD24085.1  16 NELTSLAAKIKIRAlENQKKLKEQSEQESskesEDEEQDENAKT---NKRShKSKQEEEDEDENSTSYETFE---TfSELnLVPELIQACKNL 102
                 45555555554332244444444444444110033333333333...2211022222222222222222222...123331345667777665 PP

>> TERB2  Telomere-associated protein TERB2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   8.6     0.011        10      97     166 ..      19      90 ..       9     107 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.011
       TERB2  97 rkkigrfiwe.qdnqslveqssevhsaeepe.iakdslleekeeqasklaksaeksatstsksekqlcselk 166
                 ++ +++ + +  +nq  ++++se++s++e e  ++d+  ++++++ +++++++++ + sts +  +++sel+
  CCD24085.1  19 TSLAAKIKIRaLENQKKLKEQSEQESSKESEdEEQDENAKTNKRSHKSKQEEEDEDENSTSYETFETFSELN 90 
                 554444433213444444444444444444404444433333333333445555666777777777777665 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   5.9     0.011        11     110     176 ..      10      75 ..       2     133 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.011
         Zip 110 tpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqaseeedk 176
                 ++k ++++ +  aak ++ + + +++ + +++ +e  ++ + +e++ n k++k +++++q++e+ed+
  CCD24085.1  10 QKKSSNNELTSLAAKIKIRALENQKKLKEQSE-QESSKESEDEEQDENAKTNKRSHKSKQEEEDEDE 75 
                 44444444454555555544444443332221.1222222223333333333333333333322221 PP

>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  12.7     0.016        15     143     236 ..      10     102 ..       5     106 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.016
  UBA_e1_thiolCys 143 kgerdeeaiakllskvkvpefkpkekvkiavsdeeakeeeeeeedeeeleelaeeleklakkesslalklkpieFeKDddtnfhidfitaasNl 236
                      +++++++++++l++k+k+ + ++++k k++ ++e++ke+e+e e++e+ ++ +++ ++ +++e++ + + +   Fe   + n   + i a+ Nl
       CCD24085.1  10 QKKSSNNELTSLAAKIKIRALENQKKLKEQSEQESSKESEDE-EQDENAKTNKRSHKSKQEEEDEDENSTSYETFETFSELNLVPELIQACKNL 102
                      45567889999999***********99988666666666544.334555555555555555555555899999******************998 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   8.1     0.016        15     276     322 ..      33      77 ..       3     104 .. 0.37

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.016
      DUF913 276 ssssssetkeeekssededvemedaeeetesesdeseeseeekekns 322
                 +++ ++++++e+ s+e+ed e++d++++t+++s++s+++ee++++ns
  CCD24085.1  33 QKKLKEQSEQES-SKESED-EEQDENAKTNKRSHKSKQEEEDEDENS 77 
                 111111111111.222222.222222222222222222222222222 PP

>> DUF4471  Domain of unknown function (DUF4471)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  10.0     0.016        15     145     222 ..      10      87 ..       4     108 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.016
     DUF4471 145 qhvktatdvserNvlellqeletreeyklkkkksersdkveeekkekkeeeeekeeeeeakdeeeekeseleelekvk 222
                 q++ ++ +++       ++ le++++ k ++++++++++ +ee++e+ +++++++++++++++e+e+++++e++e ++
  CCD24085.1  10 QKKSSNNELTSLAAKIKIRALENQKKLKEQSEQESSKESEDEEQDENAKTNKRSHKSKQEEEDEDENSTSYETFETFS 87 
                 56666677777777778999*****99999999999999988888777777788888888888888888888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2671  (0.148977); expected 358.6 (0.02)
Passed bias filter:                     1152  (0.0642534); expected 358.6 (0.02)
Passed Vit filter:                       317  (0.0176809); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.45
# Mc/sec: 3386.99
//
Query:       CCD24086.1  [L=298]
Description: hypothetical protein NDAI_0C04260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2420.87
//
Query:       CCD24087.1  [L=1094]
Description: hypothetical protein NDAI_0C04270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.032   13.0   0.2        0.7    8.6   0.0    3.3  2  Otopetrin      Otopetrin


Domain annotation for each model (and alignments):
>> Otopetrin  Otopetrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   3.5      0.16   2.9e+03     109     145 ..      42      64 ..       8     195 .. 0.61
   2 ?    8.6   0.0   3.9e-05       0.7     161     234 ..     832    1060 ..     261    1086 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.16
   Otopetrin 109 eeassssssaridalrkakkvltkstakekiisarle 145
                 e++++ ++              t+++a+e+i++++++
  CCD24087.1  42 ETSNNCNE--------------TTNQAAENISIDSTN 64 
                 11111111..............111111111111111 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 3.9e-05
   Otopetrin  161 rtnimgtlvqdaapylyPfiiEYsligaavlyvmw.............................................................. 195 
                  +t+ + + v+++  +l  f  E  lig+++                                                                   
  CCD24087.1  832 KTTLTEKYVNSLEYFLMEFRWENKLIGLGLKLRESkrtwqrrkalfalfefwrdqsvekrgfpnysmlhavkemenyrifinrsvswfynhitllkm 928 
                  5555555566666666666666666666555443344446666666666666666666666666666666666666666666666666666666666 PP

   Otopetrin  196 .............................................................................................knig 199 
                                                                                                               +ni 
  CCD24087.1  929 ilydlcdntdtqwrewmfpkgkvlptlesegvtpdnlneaiddvlgfdflddgtwnkevksskvilptsfdksdsrdpsitneplgglpsvpaQNIA 1025
                  6666666666666666666666666666777777777777777777777777777777777777777777777777777777777777777777777 PP

   Otopetrin  200 rqpkvrekesraenslsavadaeeannesrrkdkr 234 
                  +q+ ++++++++++++++ ++++++++++++++++
  CCD24087.1 1026 QQVPEEQQKQQQQQQQQQQQQQQQQQHQQQEQKQH 1060
                  76665444433333222222222222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1094 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4166  (0.232361); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                       237  (0.0132188); expected 17.9 (0.001)
Passed Fwd filter:                        90  (0.0050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.12u 0.42s 00:00:02.54 Elapsed: 00:00:00.58
# Mc/sec: 5633.52
//
Query:       CCD24088.1  [L=318]
Description: hypothetical protein NDAI_0C04280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-21   77.4   1.1    3.2e-21   76.1   1.1    1.6  1  Ins_P5_2-kin  Inositol-pentakisphosphate 2-kinase
  ------ inclusion threshold ------
       0.11   12.7   0.1        0.3   11.3   0.1    1.7  1  DUF1244       Protein of unknown function (DUF1244)


Domain annotation for each model (and alignments):
>> Ins_P5_2-kin  Inositol-pentakisphosphate 2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   1.1   3.5e-25   3.2e-21       3     331 ..       5     298 ..       4     299 .. 0.75

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 3.5e-25
                   EE-SSEEEEEE-SS-TTTTTE.EEEEEEEESTSHHHHT-SSHHHHHHHHHHHTTHHHHTSTSB---EEEEE-.............HHHHHHHHHHHG CS
  Ins_P5_2-kin   3 gEGaaniVfsytgsspsalgk.vLRlrKapksekdseskaeseeeslsfvrkvispllgseylvdqelvrld.............refleelnekle 85 
                   g+G+ani++++ +++++  ++ + R+   p   ++ es  + +  +++f ++++ pllg+ey+++ elv+l+             ++f+       +
    CCD24088.1   5 GKGNANILIRFPNENDDKNDEyLYRFCIRPF--QSLESYNSYTMTNHEFIKRELVPLLGEEYVCSLELVSLPicddlkrilgpycKSFI-------T 92 
                   89**********9888776668999988888..8999999999***************************9644444433333332222.......2 PP

                   GG.S-H....HHHHHEEE-TT-.SEEEEEE-TTSSSSS.T.S-EEEEEE-----S..---STTS-GGGGGGGTS-HHHHHHHHHHHTTSSSS--S-- CS
  Ins_P5_2-kin  86 ae.rpa....aRrrkaevdvak.ecallleDltllpgs.k.sktitvEiKPKwGflqspsaplsaetkeikkrvcrfcahqalklkegkieeiskyc 174
                   ++  pa       +  ++++++ +  +l eD+ l+    + ++ i++E+KPKw +   p+              cr c+h+ +k+     +e+ kyc
    CCD24088.1  93 KNmIPAsdsiMGLKVLNLKPSRlSMDILQEDHQLKVYVdAtGDKIVLEVKPKWLY--NPDTL----------GFCRNCVHNSFKK-----RENIKYC 172
                   2223331111122222333433246667777777666684589**********55..77773..........89**********4.....4555*** PP

                   HHHHTSS-HHHHHHHHHHHHHS-TTTEEEEETTEEHHHHHHHHHHHHH.THHHHHHHHHTT-SSHHHHHHHHHH.HHHH.....HHHTS-HHHHHHH CS
  Ins_P5_2-kin 175 PldLfsgdearvrraleallktpqNnlkvflngklkfvellleaLles.svLerLlqlQkldrlDiegllklykkeeekkeessleesesleealel 270
                     ++  + + + +  + +l++   N  k   +    f++ l ++++++ +vL+rL  lQ+  +l+ + ++ +                 +++   ++
    CCD24088.1 173 MASM-VKARTHHQVNIMDLFH--ENTVKCLPE---IFIDDLNNYFQNDdNVLKRLYYLQR--NLSDKTVS-IE----------------KINSDDDV 244
                   9998.5666777777888888..677777765...89********98779*********6..55523222.11................22233466 PP

                   HHHHHHHHHHHH-EEEEEESS--SEEEEETTTTEEEEEEEEEE------TTHHHHHHHHHH CS
  Ins_P5_2-kin 271 ldkyllaatlkDCSimirlsssaesrelsqsrgrafsyevkviDLDpKsakklekwvkldr 331
                      +++ + l+D +++i+         +++++++  +++ ++iDLD+K+ +k+++w++++r
    CCD24088.1 245 TTGLMILMILRDVTVFISW-------DKQDGDTDGNHISSHIIDLDLKPRSKWKHWQETER 298
                   7889***************.......889999999***********************997 PP

>> DUF1244  Protein of unknown function (DUF1244)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.3e-05       0.3      11      38 ..     153     180 ..     150     190 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.3e-05
                 S--HHHHHHHHHHHHHHCT----HHHHH CS
     DUF1244  11 gFCRNCLskwyreaaeergvelskdear 38 
                 gFCRNC+ + +++  + + +  s  +ar
  CCD24088.1 153 GFCRNCVHNSFKKRENIKYCMASMVKAR 180
                 9******999988777666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2397.62
//
Query:       CCD24089.1  [L=464]
Description: hypothetical protein NDAI_0C04290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-19   69.5   0.0    4.7e-19   68.8   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    4.1e-12   46.7   0.0    1.2e-11   45.2   0.0    1.9  1  Methyltransf_12  Methyltransferase domain
      2e-09   38.0   0.0    3.5e-07   30.8   0.0    2.5  1  Methyltransf_25  Methyltransferase domain
    2.7e-09   36.7   1.0    0.00019   20.9   0.0    3.2  3  Ubie_methyltran  ubiE/COQ5 methyltransferase family
      5e-07   30.3   0.0      0.046   14.4   0.0    2.5  2  Methyltransf_11  Methyltransferase domain
    4.2e-06   26.6   0.0    1.1e-05   25.3   0.0    1.7  1  Methyltransf_31  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   1.6e-22   4.7e-19      24     165 .]     238     411 ..     199     411 .. 0.82

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 1.6e-22
  Methyltransf_23  24 grvLdiGcGtGillevlrengf.svtgvDlspeaveiae..............................kakkaqkdqfdeqeaaepqg..... 81 
                      g vL++  GtG++ +++ ++   s+t+ D s+++ ei                                 ++  +k+           +     
       CCD24089.1 238 GDVLEVSSGTGRNIKYINPEKIsSITFLDSSEKMMEITVekfkkrfpwykkvafvvgkaenllnlagqkMIDDDIKKVN---------Diqpeq 322
                      69***************9998879*************999999999988888888888886666665542222222222.........133333 PP

  Methyltransf_23  82 .....kfdlIvlrevlehvpdppellrqiatllkpgGylllseplaslk.edrllldwlylvpagrhisffsarslkelleeaGlevvel 165
                           k+d+I+ +++l++ +dp ++l+++ +llkpgG+++l+e+++  +   +++ld + +    ++++ ++  +l+e+l ++ le+ve+
       CCD24089.1 323 pdvkvKYDTIIETFGLCSHEDPVKALNNFSKLLKPGGRVILLEHGRGEYdFINKILDKRSEKRLKTWGCRWN-LDLGEILDDSELEIVEE 411
                      45568***************************************997656999999998887777*******.***************85 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0     4e-15   1.2e-11       1      99 []     241     361 ..     241     361 .. 0.89

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 4e-15
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsai..edakeklakrennnnnnvelealdlldldgg.....................ssfDlvv 71 
                      Le+ +GtG++++++ ++ + +++t++D s++++  +  k k ++   +++++v  +a++ll+l+g+                      ++D+++
       CCD24089.1 241 LEVSSGTGRNIKYINPE-KISSITFLDSSEKMMeiTVEKFKKRFPWYKKVAFVVGKAENLLNLAGQkmidddikkvndiqpeqpdvkVKYDTII 333
                      89***************.999999*********444444444455678999************999**************************** PP

  Methyltransf_12  72 as.nvlhhlkdirevldnirklLkpgGrl 99 
                         ++++h +d+ ++l+n+ klLkpgGr+
       CCD24089.1 334 ETfGLCSH-EDPVKALNNFSKLLKPGGRV 361
                      87467777.******************85 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.2e-10   3.5e-07       1      97 []     240     359 ..     240     359 .. 0.78

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.2e-10
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEEESBCCGBS.....................SSTT..TEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl...nvefvqgdaedlp.....................fedg..sfDlv 68 
                      vL++  GtGr+++++  + + +++t +D se+m+e++ e+++++ +   +v fv+g+ae+l                      ++d   ++D +
       CCD24089.1 240 VLEVSSGTGRNIKYINPE-KISSITFLDSSEKMMEITVEKFKKRFPwykKVAFVVGKAENLLnlagqkmidddikkvndiqpeQPDVkvKYDTI 332
                      8****************9.69********************99766889*********997334445555555555555443324442356666 PP

                      EEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  69 vssgalhhlsdedlekalkeiarvLkpgG 97 
                      + +  + ++s+ed  kal++++++LkpgG
       CCD24089.1 333 IET--FGLCSHEDPVKALNNFSKLLKPGG 359
                      664..6677889999*************9 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.1    0.0097        29     132     188 ..      72     127 ..      68     146 .. 0.87
   2 !   10.2   0.1   0.00012      0.35      27     110 ..     216     299 ..     197     310 .. 0.72
   3 !   20.9   0.0   6.2e-08   0.00019      84     164 ..     299     376 ..     297     390 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0097
                      HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHHHHHHHHS-HHHH CS
  Ubie_methyltran 132 klkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPvlGkllakdldsy 188
                      +++ Lk+ yr+++ G  +    fsk  ++ l + y ++  + +  + k+ +k+  + 
       CCD24089.1  72 YEEMLKSPYRIVRWGAFVRSDSFSKKLTKYLIVLYIIFLVNGVQYMKKMYSKEK-EL 127
                      6789************************************99999999999994.44 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00012
                      HHTTTHHHHHHHHHHH--S--TTEEEEES-TT-HHHHHHHHHHHHHHEEEEEES-HHHHHHHHHHHHHHT..SSTEEEEE--TTT- CS
  Ubie_methyltran  27 lslgihrlWkkfveklvavkrgakvlDvagGtgDlafklsdsvgekgkvvvlDinenmLkvgekklkeeg..kinieflqanaeeL 110
                      +s++   +   +  k   ++   +vl+v++Gtg     +    ++   ++ lD +e+m++++ +k k++   ++++ f++++ae+L
       CCD24089.1 216 ISFEERMIGMGKRRKWLMKHCHGDVLEVSSGTGRNIKYINP--EKISSITFLDSSEKMMEITVEKFKKRFpwYKKVAFVVGKAENL 299
                      55555555555555555555566899999999976555443..4556899***************998752256**********98 PP

  == domain 3  score: 20.9 bits;  conditional E-value: 6.2e-08
                      HHHHHHHHHHHHTSSTEEEEE--TTT-TTS-T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHH CS
  Ubie_methyltran  84 mLkvgekklkeegkinieflqanaeeLpfeddsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsq 164
                      +L+ + +k+ ++  ++++ +q +    p  +  +D++  +fGl    D  kaL++  + lkpGGr++ le  + e   +++
       CCD24089.1 299 LLNLAGQKMIDDDIKKVNDIQPE---QPDVKVKYDTIIETFGLCSHEDPVKALNNFSKLLKPGGRVILLEHGRGEYDFINK 376
                      56666666666666665555544...4555567899999*******************************99988776665 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.5e-05     0.046       1      57 [.     241     302 ..     241     309 .. 0.87
   2 !   13.4   0.0   3.1e-05     0.093      61      95 ..     328     362 ..     312     363 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
                      EEET-TTSHHHHHHH.HTTSEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECCCT.SS CS
  Methyltransf_11   1 LdvGcGtGrlaeala.krgarvvgvDlskemlklakekaseegl...kvefvvadaekl.pf 57 
                      L+v +GtGr+ +++  ++ ++++ +D s++m+++  ek +++ +   kv fvv+ ae+l ++
       CCD24089.1 241 LEVSSGTGRNIKYINpEKISSITFLDSSEKMMEITVEKFKKRFPwykKVAFVVGKAENLlNL 302
                      7999***********6666*************9998888888778999*********97466 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.1e-05
                      -EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  61 sfDlvvssevlhhvedpekalkeiaRvLkpgGllv 95 
                      ++D ++ ++ l+  edp kal+++ ++LkpgG+++
       CCD24089.1 328 KYDTIIETFGLCSHEDPVKALNNFSKLLKPGGRVI 362
                      57999999999999******************998 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.7e-09   1.1e-05       6     132 ..     239     389 ..     234     413 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 3.7e-09
  Methyltransf_31   6 rvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklg..ldnveFeqgdieelekl.led....................ekfD 76 
                       vl++ +GtG+ ++ ++ e ++   ++ +D se++ e   e+ +k +  ++ v F +g +e+l +l  ++                     k+D
       CCD24089.1 239 DVLEVSSGTGRNIKYINPEKIS--SITFLDSSEKMMEITVEKFKKRFpwYKKVAFVVGKAENLLNLaGQKmidddikkvndiqpeqpdvkVKYD 330
                      69999*********99987654..68899******9999999999875578***********77665554788888888888887777777777 PP

  Methyltransf_31  77 lilsnevlnaladpdkileeiervlkpggilliedpr.llaelpakveeeskay..evv 132
                       i+    l+   dp k+l++ +++lkpgg++++ ++  ++++++ k+ +++ ++  +++
       CCD24089.1 331 TIIETFGLCSHEDPVKALNNFSKLLKPGGRVILLEHGrGEYDFINKILDKRSEKrlKTW 389
                      77777777**********************98877665999999888888886656444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3185.65
//
Query:       CCD24090.1  [L=240]
Description: hypothetical protein NDAI_0C04300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-07   29.9   2.2    9.1e-07   29.4   2.2    1.2  1  Cyclin    Cyclin
    1.1e-06   28.4   0.4    2.1e-06   27.5   0.4    1.5  1  Cyclin_N  Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   2.2     1e-10   9.1e-07      12     161 .]      25     193 ..      14     193 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1e-10
                 HHHHHHHH--------------T...................................T--SS-..........-SS-HHHHHHHHHHHTT--HHHHHH CS
      Cyclin  12 drlvanndetatasadsksnlensqkqss..............shtkttfaqtpkessFatkav..........paisigsylsrlqkfgesaplvllg 86 
                 +++ ++++++   s++ + + +     ss                +k++  ++                     +  s++s +  ++k ++s+  +ll 
  CCD24090.1  25 KSTQTKTSSNNIHSQQTSTPPSSPTSYSSkldqktlesipltlFTNKIASFLSET--------AkkysttrinnDVQSLKSFINEITKRSKSKRNILLL 115
                 4444444444444444333322222333345556665555554233333333333........244444444447779********************* PP

                 HHHHHHHHHH.....H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT-- CS
      Cyclin  87 tliYldrivk...rcvsealvvtsanihRllivallvatKflvDlsysnekfakvggislkELnkLEidFlflvdFdl 161
                 + +Y++++ +    c   ++   ++ + R  ++ + +a K l+D+  s e ++ + g+  k L  +E   l  +d++l
  CCD24090.1 116 ATYYFQKLYTslsTCPVSTIPEFAFCAKRSFLTCIIIAHKYLNDSTFSMESWSLISGLNKKALSTIERWCLGKLDYNL 193
                 ********997777888888888999*****************************************99888888875 PP

>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.4   2.3e-10   2.1e-06      32     126 ..      93     193 ..      66     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.3e-10
                 HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHH.HS---CC.......CHHHHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHHHHT CS
    Cyclin_N  32 ailidwlvevaekfkltpetlflavnyldRfls.kksvpkd.......klqlvgatcLllAaKveeisppkledlvyitdeafteeeilemErliLetL 122
                 ++l +++ e++++ k ++++l+la  y+ ++++    +p +        +++ ++tc+++A K+ ++s+ ++e +  i++   +++ + ++Er  L +L
  CCD24090.1  93 QSLKSFINEITKRSKSKRNILLLATYYFQKLYTsLSTCPVStipefafCAKRSFLTCIIIAHKYLNDSTFSMESWSLISG--LNKKALSTIERWCLGKL 189
                 35889*************************99834455555889999999****************************77..99*************** PP

                 TT-- CS
    Cyclin_N 123 nfdl 126
                 +++l
  CCD24090.1 190 DYNL 193
                 **98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1231  (0.0686597); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1864.06
//
Query:       CCD24091.1  [L=259]
Description: hypothetical protein NDAI_0C04310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-21   77.3  12.6    8.4e-16   58.2   2.0    2.5  2  Scs3p     Inositol phospholipid synthesis and fat-storage-ind
     0.0009   19.0   1.0     0.0018   18.0   0.4    1.9  2  PAP2      PAP2 superfamily
  ------ inclusion threshold ------
      0.029   13.6   6.4       0.13   11.5   6.4    1.9  1  DUF2776   Protein of unknown function (DUF2776)


Domain annotation for each model (and alignments):
>> Scs3p  Inositol phospholipid synthesis and fat-storage-inducing TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   2.0   1.4e-19   8.4e-16       4     158 ..      42     185 ..      39     201 .. 0.74
   2 !   25.2   3.4   1.7e-09     1e-05     198     246 .]     193     244 ..     178     244 .. 0.69

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.4e-19
       Scs3p   4 yfankdnilNvlFVKrgW.fWttlvvlllllt...epryeastsakst.........arkrrlkkallrylilTlwWilftqwffgppimdrifvltGg 89 
                 y+ n +ni+N+++  +g  +W  l +ll ++    +    +++ +            +++r++++ +++y+i  ++  ++   +f   i+d +f+ltGg
  CCD24091.1  42 YVLNSKNIFNQVMAYNGNkVWSILFILLSVIQirlQ----STNIN--LlprhvdsaaSKRRHVNSLIKQYVIKFVLKNVLLAFLF--LIIDSLFILTGG 132
                 8899************97367666666666644331....22222..13345667768889999999999998777777666655..7*********** PP

       Scs3p  90 kCellfevfdeeseeeeelsekvtsaaCkaaggkWkgGhDiSGHvFLlvlssllLleelapvvakrala 158
                 +C+l              ++   ++ +Cka gg+W+gG+DiSGH   l+  sl+L++el+ +++k+ l+
  CCD24091.1 133 ECNL--------------IEDIWSAEHCKAKGGRWEGGFDISGHFCFLINISLILWSELS-LLNKV-LE 185
                 ***3..............455677889********************************9.44443.22 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 1.7e-09
       Scs3p 198 kalllen.illlalvglwlwm..llmTaiyFHtllEklsGLlvallvvllvY 246
                 k+  + + ++++ l +l lwm  l++Ta+y+HtllEk+ G ++++++ +++Y
  CCD24091.1 193 KIDKWMEgVIVIILGCLYLWMgiLFVTAVYYHTLLEKILGCILGFVCPIVMY 244
                 33333333666666666666555**********************9988887 PP

>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.23   1.4e+03       8       8 ..     100     100 ..      41     130 .. 0.59
   2 !   18.0   0.4     3e-07    0.0018      53     134 ..     154     250 ..     115     252 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.23
        PAP2   8 a 8  
                 +
  CCD24091.1 100 S 100
                 1 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 3e-07
        PAP2  53 kesf.PSgHsafafalalllalllrrkrkkig..............lvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayrlvqkk 134
                   +f  SgH +f   + l+l++ l  + k                  v+++ +  l++++ +l   ++++H+l   + G ++G+++ +++y++ +++
  CCD24091.1 154 EGGFdISGHFCFLINISLILWSELSLLNKVLEdreetftkidkwmeGVIVIILGCLYLWMGILFVTAVYYHTLLEKILGCILGFVCPIVMYYFIPNN 250
                 568899***************9999999988899************9999999999999*********************************99876 PP

>> DUF2776  Protein of unknown function (DUF2776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   6.4   2.2e-05      0.13     186     267 ..     157     239 ..      33     257 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.2e-05
     DUF2776 186 efvaGhv..lvGlalicaslialvativrqirntysekerklWsalvlvlgsislllGivvllassasaalatGyiliglglvc 267
                 + ++Gh   l+ ++li  s ++l+  ++    +t+++ ++++  ++v++lg + l +Gi+ + a   ++     ++   lg+vc
  CCD24091.1 157 FDISGHFcfLINISLILWSELSLLNKVLEDREETFTKIDKWMEGVIVIILGCLYLWMGILFVTAVYYHTL-LEKILGCILGFVC 239
                 45788853378999*********************************************98665444332.2233333456776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1019  (0.0568353); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1938.71
//
Query:       CCD24092.1  [L=706]
Description: hypothetical protein NDAI_0C04320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-25   88.7   2.4    3.7e-25   87.6   2.4    1.6  1  Ubiq-assoc   Ubiquitin-associated
    5.8e-10   38.6   3.6      0.015   15.1   0.0    3.8  4  TPR_1        Tetratricopeptide repeat
    2.4e-08   33.4   1.4        0.1   12.8   0.2    3.9  4  TPR_2        Tetratricopeptide repeat
     0.0027   17.9   0.1        3.1    8.2   0.0    2.6  2  TPR_12       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.016   15.8   0.1       0.18   12.5   0.1    2.8  3  TPR_6        Tetratricopeptide repeat
      0.041   13.7   0.2       0.12   12.2   0.0    1.9  2  Exonuc_VIII  Enterobacterial exodeoxyribonuclease VIII
       0.15   12.2   3.5        3.6    7.7   0.3    3.1  3  MIT          MIT (microtubule interacting and transport) doma
       0.91    9.9   6.8         10    6.6   0.6    3.8  4  TPR_8        Tetratricopeptide repeat
        2.7    7.8   5.0        2.1    8.1   0.1    3.0  4  TPR_11       TPR repeat


Domain annotation for each model (and alignments):
>> Ubiq-assoc  Ubiquitin-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   2.4   1.8e-28   3.7e-25       1      44 []     144     187 ..     144     187 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 1.8e-28
                 -SHHHHHHHHHHHHHH---SHHHHHHHHHH-SSHHHHHHHHHS- CS
  Ubiq-assoc   1 vvDEvkDmEiAkLMSLGLsidkAneyYekGilYedllekrkekk 44 
                 +vDEvkDmE+A+LMSLGLsid+An+yY+kGilYed+++k++ekk
  CCD24092.1 144 IVDEVKDMEVARLMSLGLSIDQANKYYDKGILYEDIIRKQREKK 187
                 8****************************************996 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.9   5.8e+03       3      12 ..     168     177 ..     166     178 .. 0.72
   2 !   10.5   0.0   0.00021      0.42       6      32 ..     419     445 ..     415     447 .. 0.86
   3 !   15.1   0.0   7.6e-06     0.015       3      33 ..     454     484 ..     452     484 .. 0.94
   4 !   11.3   0.5   0.00012      0.24       6      29 ..     514     537 ..     510     538 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.9
                 HHHHHHHHHH CS
       TPR_1   3 alynlGnayf 12 
                  +y +G +y 
  CCD24092.1 168 KYYDKGILYE 177
                 5888888885 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00021
                 HHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   6 nlGnayfklgkydeAleyyekALelnP 32 
                  +G  +fk+g+y  Al+ yek L   P
  CCD24092.1 419 TRGSELFKNGDYVSALQEYEKSLNTLP 445
                 6999*****************996655 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 7.6e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                 ++ n+ ++ +k g+y + +e+++ AL+l P+
  CCD24092.1 454 SYSNIIATQLKIGEYSKSIEDCKIALSLFPK 484
                 699*************************996 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00012
                 HHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALe 29 
                 + +  y +l++y+ Al+ y+k +e
  CCD24092.1 514 RQAESYEHLENYKLALDSYQKLIE 537
                 67899***************9665 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.2   6.4e+03      18      28 ..     164     174 ..     163     177 .. 0.72
   2 !   12.0   0.0     9e-05      0.18       6      33 ..     419     446 ..     415     447 .. 0.88
   3 ?    4.7   0.0     0.019        38      12      33 ..     463     484 ..     461     484 .. 0.91
   4 !   12.8   0.2   5.1e-05       0.1       5      29 ..     513     537 ..     509     539 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.2
       TPR_2  18 eeAleafekAl 28 
                 ++A ++++k +
  CCD24092.1 164 DQANKYYDKGI 174
                 67888888865 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 9e-05
       TPR_2   6 nlGlayyklgdyeeAleafekAleldPn 33 
                  +G  ++k+gdy  Al+ +ek+l   P+
  CCD24092.1 419 TRGSELFKNGDYVSALQEYEKSLNTLPQ 446
                 68999*****************987775 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.019
       TPR_2  12 yklgdyeeAleafekAleldPn 33 
                 +k g+y + +e+++ Al+l P+
  CCD24092.1 463 LKIGEYSKSIEDCKIALSLFPK 484
                 5779****************96 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 5.1e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAle 29 
                 ++++++y++l +y+ Al+ ++k +e
  CCD24092.1 513 MRQAESYEHLENYKLALDSYQKLIE 537
                 689*******************997 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0016       3.1      13      66 ..     424     473 ..     419     483 .. 0.86
   2 !    6.8   0.1     0.004         8       8      31 ..     514     537 ..     509     539 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0016
      TPR_12  13 lrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 l++ g+y  Al+ +ek+l+        +hpl ++++ n+  ++++ g+y + +e
  CCD24092.1 424 LFKNGDYVSALQEYEKSLNTLP----QYHPLRIISYSNIIATQLKIGEYSKSIE 473
                 6789999999******999993....4699999999999999999999988775 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.004
      TPR_12   8 nlaavlrrlgrydeAlellekale 31 
                 + a+ + +l++y  Al+ ++k +e
  CCD24092.1 514 RQAESYEHLENYKLALDSYQKLIE 537
                 68999**************99876 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.6   5.2e+03      11      28 ..     425     442 ..     421     446 .. 0.75
   2 ?   12.5   0.1   9.1e-05      0.18       4      29 ..     513     538 ..     511     543 .. 0.91
   3 ?   -3.3   0.0         9   1.8e+04      21      32 ..     660     671 ..     659     671 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.6
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6  11 rklgdtdkAlealerlik 28 
                 +k gd+  Al+ +e+ ++
  CCD24092.1 425 FKNGDYVSALQEYEKSLN 442
                 566699999999998665 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 9.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerlike 29 
                 +++a+sy+ l ++  Al+ +++li++
  CCD24092.1 513 MRQAESYEHLENYKLALDSYQKLIEN 538
                 699******88*************97 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 9
                 HHHHHHHHH-TT CS
       TPR_6  21 ealerlikeYPd 32 
                 ++l+ + k +Pd
  CCD24092.1 660 TYLKAITKTHPD 671
                 789999999998 PP

>> Exonuc_VIII  Enterobacterial exodeoxyribonuclease VIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.7   9.3e+03     155     188 ..     131     169 ..     120     171 .. 0.63
   2 ?   12.2   0.0   6.2e-05      0.12      83     160 ..     338     415 ..     322     435 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.7
  Exonuc_VIII 155 vlaqyiGeekylthvdalqkkeilr.....levdtdtsl 188
                  +++++  + +    vd ++ +e++r     l +d+ + +
   CCD24092.1 131 LVTEHEKDYEEEIIVDEVKDMEVARlmslgLSIDQANKY 169
                  555554444445567999999999966666666666655 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 6.2e-05
  Exonuc_VIII  83 smtwelkpGvtlpsseaaaadrahivdGvdtetGevledieenlgnesnspaqatapapellvvatqelrirvlaqyi 160
                  sm+ +  p +t  ++e+   +    +dG +t+t     +i  n  n s+s a + +p+p  +++at ++ +  l+ +i
   CCD24092.1 338 SMAKNIPPSITPDTTETNNNNALLDFDGLSTVTAPGSSNISVNKKNTSSSSATSPSPSPASITIATVPISHIELSGHI 415
                  67777778877777777777666679*********************************************9999887 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       3.7   7.4e+03      22      39 ..     165     182 ..     163     193 .. 0.61
   2 ?    3.6   0.0     0.034        67      16      34 ..     426     444 ..     416     451 .. 0.89
   3 ?    7.7   0.3    0.0018       3.6       8      29 ..     513     534 ..     510     538 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.7
         MIT  22 eAlelYkealelLlqalk 39 
                  A ++Y +++ +   + k
  CCD24092.1 165 QANKYYDKGILYEDIIRK 182
                 577888888876555554 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.034
         MIT  16 nagnyeeAlelYkealelL 34 
                 ++g+y  Al+ Y+++l+ L
  CCD24092.1 426 KNGDYVSALQEYEKSLNTL 444
                 689*************987 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0018
         MIT   8 vkkAveeDnagnyeeAlelYke 29 
                  ++A  ++  +ny+ Al+ Y++
  CCD24092.1 513 MRQAESYEHLENYKLALDSYQK 534
                 689*****************97 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       8.9   1.8e+04      18      28 ..     164     174 ..     163     177 .. 0.63
   2 ?    3.7   0.0     0.044        88       7      28 ..     420     441 ..     419     443 .. 0.91
   3 ?    0.3   0.0      0.55   1.1e+03      12      33 ..     463     484 ..     461     484 .. 0.87
   4 ?    6.6   0.6    0.0051        10       5      29 ..     513     537 ..     509     538 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 8.9
                 HHHHHHHHHHH CS
       TPR_8  18 eeAkeyyekal 28 
                 ++A +yy k +
  CCD24092.1 164 DQANKYYDKGI 174
                 56667777755 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.044
                 HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekal 28 
                  gs ++k gdy +A + yek l
  CCD24092.1 420 RGSELFKNGDYVSALQEYEKSL 441
                 58999***************97 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.55
                 HHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekaleldpd 33 
                 lk g+y +++e ++ al+l p+
  CCD24092.1 463 LKIGEYSKSIEDCKIALSLFPK 484
                 6889**********99999875 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0051
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekale 29 
                 ++ +  y+ l++y+ A  +y+k +e
  CCD24092.1 513 MRQAESYEHLENYKLALDSYQKLIE 537
                 677899****************997 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.5   6.9e+03       2      36 ..     167     174 ..     164     177 .. 0.51
   2 ?    8.1   0.1     0.001       2.1       1      22 [.     421     442 ..     421     447 .. 0.88
   3 ?   -3.4   0.0         4     8e+03       8      16 ..     466     474 ..     464     483 .. 0.74
   4 ?    0.2   0.2       0.3     6e+02       9      22 ..     524     537 ..     519     537 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.5
      TPR_11   2 dayyeqGkyeeAieaYkkAlkldPdnaeayynLGl 36 
                 + yy+                            G 
  CCD24092.1 167 NKYYD---------------------------KGI 174
                 44555...........................554 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.001
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G ++++ G+y  A+++Y+k l+
  CCD24092.1 421 GSELFKNGDYVSALQEYEKSLN 442
                 889***************9887 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4
      TPR_11   8 GkyeeAiea 16 
                 G+y ++ie+
  CCD24092.1 466 GEYSKSIED 474
                 899999986 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.3
      TPR_11   9 kyeeAieaYkkAlk 22 
                 +y+ A+ +Y+k ++
  CCD24092.1 524 NYKLALDSYQKLIE 537
                 7999******9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1277  (0.0712254); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5041.94
//
Query:       CCD24093.1  [L=72]
Description: hypothetical protein NDAI_0C04330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.4e-32  108.8   8.0      1e-31  108.7   8.0    1.0  1  DASH_Dad4        DASH complex subunit Dad4
     0.0074   16.7   0.7     0.0086   16.5   0.7    1.1  1  NPV_P10          Nucleopolyhedrovirus P10 protein
  ------ inclusion threshold ------
      0.018   15.3   0.8       0.02   15.1   0.8    1.1  1  UPF0122          Putative helix-turn-helix protein, YlxM / p1
       0.02   14.8   1.2      0.033   14.1   1.2    1.3  1  HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
      0.035   13.9   0.9      0.039   13.8   0.9    1.1  1  Nsp1_C           Nsp1-like C-terminal region
      0.053   13.7   5.6      0.096   12.9   5.6    1.5  1  DASH_Dad1        DASH complex subunit Dad1
      0.068   12.6   0.4      0.071   12.5   0.4    1.1  1  FAM117           Protein Family FAM117


Domain annotation for each model (and alignments):
>> DASH_Dad4  DASH complex subunit Dad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   8.0     4e-35     1e-31       1      71 []       1      71 [.       1      71 [. 0.99

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 4e-35
   DASH_Dad4  1 MeNPheeqqsalLsRIiknvekLnesvvelnkeleeinkkNknvelvsqlwenYqrnvqfnLeatgelkeP 71
                MeNP+e++qs++LsRIi+nve+Ln+sv +ln+ele inkk kn+e+++q++enY++ +qfnLeatg++k+P
  CCD24093.1  1 MENPYEQVQSNILSRIIRNVERLNQSVNTLNQELEIINKKHKNLEIMGQISENYHNGMQFNLEATGNKKPP 71
                ********************************************************************998 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.7   3.4e-06    0.0086       4      40 ..      11      46 ..       8      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.4e-06
     NPV_P10  4 niLlvIradikavddkVdalqqqvddvqenlpdvtel 40
                niL  I  +++ +++ V+ l+q+++ +++++++++ +
  CCD24093.1 11 NILSRIIRNVERLNQSVNTLNQELEIINKKHKNLE-I 46
                9*****************************99965.4 PP

>> UPF0122  Putative helix-turn-helix protein, YlxM / p13 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.8   7.9e-06      0.02      50      93 ..      16      59 ..       6      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 7.9e-06
     UPF0122 50 vydnikrtekllekyEekLkllekykkreellekikdkllkqke 93
                +  n++r ++ ++++ + L++++k +k+ e++ +i++++ +  +
  CCD24093.1 16 IIRNVERLNQSVNTLNQELEIINKKHKNLEIMGQISENYHNGMQ 59
                677999*******************************9987554 PP

>> HU-CCDC81_bac_2  CCDC81-like prokaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.2   1.3e-05     0.033      20      64 ..      21      67 ..      18      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.3e-05
  HU-CCDC81_bac_2 20 qkiekeveelkqeLe..eegrveleniGeLslneegkleFepseagn 64
                     +++++ v++l+qeLe  ++++ +le  G++s n ++ ++F  + +gn
       CCD24093.1 21 ERLNQSVNTLNQELEiiNKKHKNLEIMGQISENYHNGMQFNLEATGN 67
                     789**********986689999******************9988887 PP

>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.9   1.5e-05     0.039      59      95 ..      13      49 ..       7      69 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.5e-05
      Nsp1_C 59 IskLysevleaeqeqnkidqeLeyiesqqdeLeslLd 95
                +s++ ++v++ +q+ n ++qeLe+i++++++Le + +
  CCD24093.1 13 LSRIIRNVERLNQSVNTLNQELEIINKKHKNLEIMGQ 49
                57788999999*********************97655 PP

>> DASH_Dad1  DASH complex subunit Dad1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   5.6   3.7e-05     0.096       3      47 ..       6      50 ..       5      58 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.7e-05
   DASH_Dad1  3 erqRdrliqeIaesmeevlnnlnaLNRsLEeviavgkeFesVaaL 47
                e+  + +++ I  ++e + +++n+LN++LE +++  k  e   ++
  CCD24093.1  6 EQVQSNILSRIIRNVERLNQSVNTLNQELEIINKKHKNLEIMGQI 50
                5667889999********************998876666655555 PP

>> FAM117  Protein Family FAM117
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   2.8e-05     0.071     118     151 ..      13      43 ..       2      56 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.8e-05
      FAM117 118 liplsklsprlrrsvegLnqEleevfvkekaeke 151
                 l+ + + + rl++sv+ LnqEle  ++ +k++k+
  CCD24093.1  13 LSRIIRNVERLNQSVNTLNQELE--II-NKKHKN 43 
                 37899999***************..33.333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1632  (0.0910257); expected 358.6 (0.02)
Passed bias filter:                      854  (0.0476323); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.38u 0.29s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 522.31
//
Query:       CCD24094.1  [L=392]
Description: hypothetical protein NDAI_0C04340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-57  191.9   0.0    1.4e-56  191.1   0.0    1.4  1  Asparaginase    Asparaginase, N-terminal
    2.2e-16   60.1   0.0    7.4e-16   58.4   0.0    1.8  2  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain


Domain annotation for each model (and alignments):
>> Asparaginase  Asparaginase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.1   0.0   1.5e-60   1.4e-56       1     189 [.      62     252 ..      62     254 .. 0.96

  Alignments for each domain:
  == domain 1  score: 191.1 bits;  conditional E-value: 1.5e-60
                   EEEEEEEESGGGEEECTTS--CCEE..S-HHHHHCCTTTCCCCSEEEEEEEEEE-GGG--HHHHHHHHHHHHHHCCT-SEEEEE--STTHHHHHHHH CS
  Asparaginase   1 kvlvlatGGTiasekdesggalapa..lsaeellealpelekiaeleseqlanidSsnmtpadwlklaeaieealeeydgfVvlhGTDTlaytAsaL 95 
                   ++ +++tGGTias++++s++++ ++  l+++++l+++p++++i+e+e+eql+n+dS++mt++ +lk+++a+ eal+++dg+V++hGTDTl++tA+++
    CCD24094.1  62 RIKIVGTGGTIASKGSDSSQTAGYHvdLTIQDMLDSIPDISQICEIEYEQLCNVDSKDMTEHLLLKIYKAVSEALQGFDGIVITHGTDTLSETAFFI 158
                   699************999988888777********************************************************************** PP

                   HHHEES.SSEEEEE--SS-TTSTT-SHHHHHHHHHHHHHCGG.TTSECEEEETTEEEETTTEEE-BSSSSS-EEETTT--SEEEETTEEEESEEE CS
  Asparaginase  96 slmlknldkpvvltGsqrplselrsDgpeNlldAllvaasse.riagvlvvfngkllranrvtKvhtssldaFespnlgplaevegskvkvnkel 189
                   + +++  d+p+v++Gs+rp++++++Dgp+Nl++A+++a++++ r++ vlv +n+++ ++ ++tK++++sld+F+ ++ g+l+++ ++++++++ +
    CCD24094.1 159 ESTIDAGDVPIVFVGSMRPSTSVSADGPMNLYQAICIASNPKsRGRSVLVSLNDQISAGYYITKTNANSLDSFN-VRQGYLGNFVNNEIHYYYPP 252
                   *************************************************************************6.578******9****999865 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.29   2.6e+03      22      35 ..     137     150 ..     116     197 .. 0.63
   2 !   58.4   0.0   8.3e-20   7.4e-16       2     114 .]     278     386 ..     277     386 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.29
                     TT--EEEEEEBTTT CS
  Asparaginase_C  22 kgakGvvlegtGvG 35 
                     +g +G+v+  +  +
      CCD24094.1 137 QGFDGIVITHGTDT 150
                     47788887655444 PP

  == domain 2  score: 58.4 bits;  conditional E-value: 8.3e-20
                     EEEEE--TT--HHHHHHHHHTT--EEEEEEBTTTB--HHHHHHHHHHHTTT-EEEEEESSSBS-----H.....HHHHHTEEE-TT--HHHHHHH CS
  Asparaginase_C   2 VvvlklhpgmdtkvlkallkkgakGvvlegtGvGnlpsallealkeakargivvvatsqcpsgsvsnseyeagkelerlgvisaddmtpeaarik 96 
                     V++++ h+ +++k+l+ ll+++++G+v++++G+G+lp ++ e    +   + +++ + + ++g++  ++  + ++ ++ ++i+++ ++pe+ ri+
      CCD24094.1 278 VCIIYGHQAITPKILT-LLAEEYEGIVFATMGAGSLPVSMNEMCLTL---NKPIIYSKRSMDGMIPVANLPKDSNGSNGNIIASGYLNPEKSRIL 368
                     99**************.7789************************99...9******************************************** PP

                     HHHHCTT---HHHHHHHH CS
  Asparaginase_C  97 Lmlllgkgldpaevrklf 114
                     L+l+l+ ++  +e+r++f
      CCD24094.1 369 LQLCLAGNYGVEEIRHVF 386
                     ***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3047.90
//
Query:       CCD24095.1  [L=317]
Description: hypothetical protein NDAI_0C04350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-06   27.7   5.8    2.7e-05   24.5   0.1    3.3  3  HMG_box      HMG (high mobility group) box
  ------ inclusion threshold ------
      0.037   13.9   1.0       0.11   12.4   1.0    1.7  1  Cas_APE2256  CRISPR-associated protein (Cas_APE2256)
        1.1    9.3   7.3        1.1    9.3   5.9    1.7  2  RP-C_C       Replication protein C C-terminal region
        5.9    7.3   8.6       0.23   11.8   0.3    2.6  3  FKS1_dom1    1,3-beta-glucan synthase subunit FKS1, domain-1


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.011        49      34      65 ..      70     101 ..      61     105 .. 0.78
   2 !   24.5   0.1   6.1e-09   2.7e-05       7      64 ..     121     179 ..     117     182 .. 0.89
   3 ?   -1.3   0.6      0.67     3e+03      46      62 ..     196     212 ..     192     219 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
                 HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box  34 klgekWkalseeeKkkYeekaekekaryekek 65 
                 k+   W +l++e K  ++++    k+  +++ 
  CCD24095.1  70 KVNSLWDNLPKETKDVFIARVLIKKENNHRKE 101
                 66789************999887776655444 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 6.1e-09
                 HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHH.SHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   7 afflfskeqraklkaenPelknaeiskklgekWka.lseeeKkkYeekaekekaryeke 64 
                 +f++++k+  + +++e P+lk + isk++g+ +++ l+  +++  +++ae+  +r +k+
  CCD24095.1 121 SFLHYRKKIGPYIRQEAPGLKEQTISKIIGQLYNNeLTGVDREILKREAEEIYEREMKQ 179
                 7********************************86378889999999999998887776 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.67
                 HHHHHHHHHHHHHHHHH CS
     HMG_box  46 eKkkYeekaekekarye 62 
                 +K +Y+e+ +  k++ e
  CCD24095.1 196 DKDPYIEEIRHWKEKKE 212
                 68899998887777655 PP

>> Cas_APE2256  CRISPR-associated protein (Cas_APE2256)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.0   2.4e-05      0.11       6      91 ..     219     308 ..     216     312 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
  Cas_APE2256   6 ElnallkllekkkkeqkeelvllssdTaaGklvaeilkeylee.egaevevveieklsdlg.ree..FreglrnLveklarevknkkreg 91 
                  Eln+l++ le+  ++ + + +  ++  + +++ ++i+k+  +   +++++++  e+ s+++ re+  F ++++n  +kl r+ k+kkr +
   CCD24095.1 219 ELNSLMERLESYSQSGNATPMNATTSKEMCQKEGDIVKTTTKTkTKTKTKTKPEEENSKQEkREKvsFATAISNQSRKLVRKFKRKKRPS 308
                  9**************999999999****************999555668888877777766344478*******9999999999877765 PP

>> RP-C_C  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.91   4.1e+03      13      56 ..      14      57 ..      10     102 .. 0.71
   2 ?    9.3   5.9   0.00025       1.1      14      89 ..     202     284 ..     196     312 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.91
      RP-C_C 13 verlprkatlaeleelleelealreevenalesalkaenssane 56
                +++l+r+++l ++ + l++  + ++  + a+    +++n+s ne
  CCD24095.1 14 INNLKRRPSLPTIHRTLSQTSNFSTGSTIAVTPSYQVQNESFNE 57
                56777777777777777777777666666666666666666664 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00025
      RP-C_C  14 erlprkatlaeleelleelealreevenalesalkaenssanes....qnerhiqnsnpd....sssesepasekereekeaaa 89 
                 e+++  ++ +el++ ++el++l e++e + +s + +  ++a++s    q+e +i +++++     +++++p+ e++++ek+++ 
  CCD24095.1 202 EEIRHWKEKKELANKVKELNSLMERLESYSQSGNATP-MNATTSkemcQKEGDIVKTTTKtktkTKTKTKPEEENSKQEKREKV 284
                 6777778889999999999999999999994444333.2333222345666666666653110033333344444444444333 PP

>> FKS1_dom1  1,3-beta-glucan synthase subunit FKS1, domain-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   5.1e-05      0.23      53     117 ..      48     111 ..      25     116 .. 0.73
   2 ?   -1.8   0.0      0.83   3.7e+03      90     123 ..     166     201 ..     139     208 .. 0.49
   3 ?   -2.1   2.7         1   4.6e+03      98      98 ..     255     255 ..     166     309 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.1e-05
   FKS1_dom1  53 eeileekvseaaaseeeesfLkkvitPlyevlrkqeaeknkegkyvrrekdHskiigYDDlNelF 117
                 +++ +e+ +e ++  + e++ +kv + l++ l k++ +      ++++e++H+k  +Y D+ elF
  CCD24095.1  48 YQVQNESFNEFMYFLSGEDYYNKV-NSLWDNLPKETKDVFIARVLIKKENNHRKELNYNDIKELF 111
                 555556666666777777787775.567777756666666677789******************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.83
   FKS1_dom1  90 eknkegkyvrrekdH.skiigY.DDlNelFWskegi 123
                 +++ e+ y r+ k+  +  ++Y DD  ++F ++  i
  CCD24095.1 166 KREAEEIYEREMKQRlEVARDYiDDSTKMFDKDPYI 201
                 333334344433333123344545555555555444 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1
   FKS1_dom1  98 v 98 
                 v
  CCD24095.1 255 V 255
                 0 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2940  (0.16398); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 2483.89
//
Query:       CCD24096.1  [L=370]
Description: hypothetical protein NDAI_0C04360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00017   21.9   0.0    0.00032   21.0   0.0    1.4  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.8e-08   0.00032      12     117 ..     213     325 ..     189     340 .. 0.66

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.8e-08
                 S..-EEEEE...S--TTSSEEEEEEEETTSCCTCT.T...EEEEEEEEEETTSSEE-TTCEE-B-TTSS.CCCCS---B--STTS..EEEEEEEEEESS CS
         PBP  12 s..Pplsws...dvpegtksyalvviDpDapkvse.t...flHwvvtnipasvtslpegavqgknslge.esesgYlgpcPpkgdgkHrYvfllyaldv 100
                 s  P ++++   +++ ++++y++++++pD p+ ++ t    l + ++ni+    s +++ v +++  g+ +   +Yl+p P+k+ gk r+ ++++  + 
  CCD24096.1 213 SfePIFKLQeydSLDIENQKYTILIVNPDEPDLENdTfktSLCYGLMNIQ---ISYNDNIVDLRKLKGKeNILMSYLPPVPEKNVGKQRFAVWVFRQEN 308
                 355667777444444589************98888764455556666666...444444444444444422334*********************7444 PP

                 SG--BGSS-SHHHHHHH CS
         PBP 101 ealdlkagftraelgaa 117
                 e ++l++ + r++++ +
  CCD24096.1 309 EFTELPSIPGRDRFNIR 325
                 44454444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.35
# Mc/sec: 3128.90
//
Query:       CCD24097.1  [L=96]
Description: hypothetical protein NDAI_0C04370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-17   62.0   0.1    5.9e-17   61.8   0.1    1.0  1  ATP-synt_E  ATP synthase E chain


Domain annotation for each model (and alignments):
>> ATP-synt_E  ATP synthase E chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.1   3.3e-21   5.9e-17       9      88 ..       3      81 ..       1      92 [. 0.88

  Alignments for each domain:
  == domain 1  score: 61.8 bits;  conditional E-value: 3.3e-21
  ATP-synt_E  9 linvlRysaLalGvvyGakrqrslkseekkeekereleaqekliekakaayakkkqakseakslaegssakiddedpdil 88
                ++nvlRysaL+lG+  G+ ++ slk+ + ++e++++++++ kli++ak++yak +  ++   ++ + ++++ dd+ +d+ 
  CCD24097.1  3 TLNVLRYSALGLGLWCGFRNDLSLKNVAAEREQQKKYDEEVKLINEAKQEYAKLRPIEK-KPETVSLENVQLDDPKLDFA 81
                69*************************************************99999888.77777788889998887653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1162  (0.0648112); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 828.39
//
Query:       CCD24098.1  [L=520]
Description: hypothetical protein NDAI_0C04380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-19   69.2  23.8    7.6e-18   64.4   4.2    3.3  3  FYVE           FYVE zinc finger
    2.7e-14   52.6   3.7    2.9e-14   52.5   1.3    2.3  2  Rbsn           Rabenosyn Rab binding domain
     0.0019   18.1   0.1     0.0019   18.1   0.1    4.1  5  zf-C2H2_6      C2H2-type zinc finger
      0.006   17.0   1.1      0.006   17.0   1.1    2.9  2  NPV_P10        Nucleopolyhedrovirus P10 protein
     0.0066   16.5   4.3     0.0066   16.5   4.3    4.2  5  DZR            Double zinc ribbon
     0.0078   17.0   0.2     0.0078   17.0   0.2    6.3  6  zf-C2H2_4      C2H2-type zinc finger
  ------ inclusion threshold ------
      0.015   15.8   0.3      0.015   15.8   0.3    5.0  2  zf-C2H2        Zinc finger, C2H2 type
       0.03   14.6   0.4       0.03   14.6   0.4    3.2  3  zf-Di19        Drought induced 19 protein (Di19), zinc-bindin
      0.057   13.7   0.5      0.057   13.7   0.5    2.9  3  zf-C2H2_jaz    Zinc-finger double-stranded RNA-binding
       0.15   12.0   0.9       0.68    9.9   0.1    2.4  2  UBZ_FAAP20     Ubiquitin-binding zinc-finger
       0.32   10.9  20.6        0.6   10.1   5.0    4.2  3  Prok-RING_1    Prokaryotic RING finger family 1
        5.3    7.3  26.7       0.94    9.7   8.4    3.8  3  zf-AN1         AN1-like Zinc finger
        6.1    6.9  14.9        3.7    7.6   2.1    3.4  3  HypA           Hydrogenase/urease nickel incorporation, metal
          8    6.5  17.7          2    8.4   0.0    4.7  5  zf-C2HC_2      zinc-finger of a C2HC-type
        8.2    6.5  10.0          9    6.3   0.0    4.1  3  zinc_ribbon_4  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.16     2e+02      11      22 ..      23      35 ..      16      42 .. 0.76
   2 !    9.5   8.5   0.00091       1.1       8      64 ..      85     145 ..      76     147 .. 0.79
   3 !   64.4   4.2   6.4e-21   7.6e-18       2      66 ..     222     306 ..     221     307 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.16
                B-TTT--B-.-SS CS
        FYVE 11 kCeiCakkF.sll 22
                 C+iC+k+F +l 
  CCD24098.1 23 VCPICSKEFhNLQ 35
                6999999995554 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00091
                 --SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EE....GGGTEEEEEEE-HHHHH CS
        FYVE   8 evkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvall....ekeaeeksvrvCkeCla 64 
                 + + C+ C  + +  +    C  CG+++C++++++ ++l      + ++ + + +C +C++
  CCD24098.1  85 KDNLCHDCGGTLTKPTGMVNCPKCGELYCKRHCKNIMKLNldaeYDVNNGSWYNCCYACFS 145
                 5578********99999****************9999887554334444455699*99986 PP

  == domain 3  score: 64.4 bits;  conditional E-value: 6.4e-21
                 ---...--SB-TTT--B--SSS--EE-TTT--EE-....STTS-EEE.EE................GGGTEEEEEEE-HHHHHHH CS
        FYVE   2 kwkddsevkkCeiCakkFsllrrrhhCrlCGkvvC....ekCssklvall................ekeaeeksvrvCkeClael 66 
                  wkdd ++++C+iC +kF++l r+hhCrlCG+vvC    ++Cs++   +                   ++++ ++r+C++C++++
  CCD24098.1 222 PWKDDLATTECNICGQKFTVLLRKHHCRLCGNVVCddesTNCSTNIPITSliqqaqnlpfqkanatDLSDADLKLRICRQCIETV 306
                 6**********************************7766667744432224444444445444444445555666******9986 PP

>> Rbsn  Rabenosyn Rab binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.3   2.7e+03      15      32 ..     435     452 ..     435     456 .. 0.81
   2 !   52.5   1.3   2.4e-17   2.9e-14       1      42 []     469     510 ..     469     510 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.3
        Rbsn  15 qAkkarrfDEvatLeeNL 32 
                 +A+++ +f E + L++ L
  CCD24098.1 435 DARQDQNFGESKKLSSVL 452
                 79********99888655 PP

  == domain 2  score: 52.5 bits;  conditional E-value: 2.4e-17
        Rbsn   1 vLeEQkflveemIkqAkkarrfDEvatLeeNLkELqeEidrl 42 
                 vL+EQ+f++ee + +Ak +r+fDEv++L +NLkEL+++++++
  CCD24098.1 469 VLKEQIFILEESLTNAKIQRKFDEVTILHTNLKELNDRVKEI 510
                 8************************************99875 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   1.6e-06    0.0019       4      21 ..      24      41 ..      23      43 .. 0.95
   2 ?   -3.5   0.6       9.6   1.2e+04      21      26 ..      74      79 ..      74      79 .. 0.88
   3 ?   -1.3   0.2         2   2.4e+03       3      10 ..     104     111 ..     104     112 .. 0.83
   4 ?    2.5   0.3      0.13   1.5e+02       2      11 ..     230     239 ..     229     240 .. 0.83
   5 ?   -3.0   0.7       6.9   8.3e+03       2      10 ..     246     254 ..     245     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.6e-06
   zf-C2H2_6  4 CsvCsksFpslqaLggHk 21
                C++Csk+F+ lq+L+ H+
  CCD24098.1 24 CPICSKEFHNLQNLNNHL 41
                ****************96 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9.6
   zf-C2H2_6 21 kksHrk 26
                k+sH+k
  CCD24098.1 74 KRSHWK 79
                89**97 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2
   zf-C2H2_6   3 eCsvCsks 10 
                 +C+ C++ 
  CCD24098.1 104 NCPKCGEL 111
                 6****986 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.13
   zf-C2H2_6   2 heCsvCsksF 11 
                 +eC++C+  F
  CCD24098.1 230 TECNICGQKF 239
                 69****9877 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 6.9
   zf-C2H2_6   2 heCsvCsks 10 
                 h C  C+++
  CCD24098.1 246 HHCRLCGNV 254
                 88999*975 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.42   5.1e+02      31      59 ..     363     391 ..     316     398 .. 0.91
   2 !   17.0   1.1     5e-06     0.006      11      66 ..     458     515 ..     449     518 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.42
     NPV_P10  31 qenlpdvtelnekLdaqsaqLaeletkve 59 
                 +++l+++++l ekL ++ a+  +l+ +++
  CCD24098.1 363 ENDLRNLSKLREKLLKLFATYSTLNRQIN 391
                 46789999999999999999999999887 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 5e-06
     NPV_P10  11 adikavddkVdalqqqvddvqenlpdvtelnekLdaqs...aqLaeletkvenIqdiLn 66 
                 +++k+  + + +l++q+  ++e l +  +++ k+d+ +   ++L+el++ v++Iqd+L 
  CCD24098.1 458 KEVKEYREELMVLKEQIFILEESLTN-AKIQRKFDEVTilhTNLKELNDRVKEIQDMLG 515
                 5789999999****************.88******97644489***************7 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.1   1.3e+03      29      38 ..      22      31 ..       9      37 .. 0.68
   2 !   16.5   4.3   5.5e-06    0.0066       7      40 ..      81     115 ..      77     120 .. 0.85
   3 ?   -2.7   0.3       5.1   6.1e+03      13      20 ..     138     145 ..     130     151 .. 0.70
   4 ?    4.9   6.0     0.023        28      14      46 ..     231     264 ..     218     265 .. 0.88
   5 ?   -0.1   0.0       0.8   9.6e+02      13      18 ..     297     302 ..     282     313 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.1
         DZR 29 drCpsCgekv 38
                ++Cp C+++ 
  CCD24098.1 22 IVCPICSKEF 31
                5677777664 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 5.5e-06
         DZR   7 elppdarfCseCgtklkavaaedrCpsCgek.vdp 40 
                 + +++++ C++Cg +l +++ + +Cp+Cge  ++ 
  CCD24098.1  81 PRRDKDNLCHDCGGTLTKPTGMVNCPKCGELyCKR 115
                 6778999**********9999********985555 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.1
         DZR  13 rfCseCgt 20 
                 + C++C +
  CCD24098.1 138 NCCYACFS 145
                 46777754 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.023
         DZR  14 fCseCgtklkavaaedrCpsCgek.vdpearfCp 46 
                  C+ Cg+k     ++++C  Cg   +d e++ C 
  CCD24098.1 231 ECNICGQKFTVLLRKHHCRLCGNVvCDDESTNCS 264
                 5*******988888**********9999999995 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.8
         DZR  13 rfCseC 18 
                 r C +C
  CCD24098.1 297 RICRQC 302
                 344444 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   6.5e-06    0.0078       2      24 .]      23      45 ..      22      45 .. 0.91
   2 ?    0.3   0.1       1.4   1.7e+03       3      14 ..      89     100 ..      88     104 .. 0.77
   3 ?   -0.2   2.7       2.1   2.5e+03       2      14 ..     104     115 ..     103     119 .. 0.75
   4 ?    2.5   4.1       0.3   3.5e+02       2      21 ..     231     249 ..     230     251 .. 0.76
   5 ?   -0.8   1.6       3.5   4.1e+03       1      11 [.     246     256 ..     246     260 .. 0.76
   6 ?   -1.2   0.1       4.4   5.3e+03       2      10 ..     298     307 ..     297     312 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.5e-06
   zf-C2H2_4  2 kCpiCgksFsskkaLlrHlkthH 24
                 CpiC+k F++ ++L++Hl   H
  CCD24098.1 23 VCPICSKEFHNLQNLNNHLDVDH 45
                6*****************97766 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.4
   zf-C2H2_4   3 CpiCgksFsskk 14 
                 C+ Cg++ + ++
  CCD24098.1  89 CHDCGGTLTKPT 100
                 *****9986655 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 2.1
   zf-C2H2_4   2 kCpiCgksFsskk 14 
                  Cp Cg+ + +k+
  CCD24098.1 104 NCPKCGELY-CKR 115
                 5****9999.544 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.3
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlk 21 
                 +C iCg+ F+   + ++H++
  CCD24098.1 231 ECNICGQKFTVLLR-KHHCR 249
                 7********65555.77765 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 3.5
   zf-C2H2_4   1 fkCpiCgksFs 11 
                 + C++Cg + +
  CCD24098.1 246 HHCRLCGNVVC 256
                 57****87765 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 4.4
   zf-C2H2_4   2 kCpiC.gksF 10 
                 +C++C  ++F
  CCD24098.1 298 ICRQCiETVF 307
                 6****76666 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   0.3   1.2e-05     0.015       2      23 .]      23      45 ..      22      45 .. 0.94
   2 ?    3.7   2.4     0.084     1e+02       2      19 ..     231     246 ..     230     249 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
                EETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  2 kCpdCgksFkrksnLkrHirt.H 23
                +Cp+C+k F +  nL++H+ + H
  CCD24098.1 23 VCPICSKEFHNLQNLNNHLDVdH 45
                7*****************98877 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.084
                 EETTTTEEESSHHHHHHH CS
     zf-C2H2   2 kCpdCgksFkrksnLkrH 19 
                 +C++Cg++F    +L++H
  CCD24098.1 231 ECNICGQKF--TVLLRKH 246
                 6********..5666666 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.4   2.5e-05      0.03       4      26 ..      23      46 ..      19      52 .. 0.56
   2 ?   -2.3   2.2       4.8   5.7e+03       3      10 ..     103     110 ..      84     122 .. 0.74
   3 ?   -1.9   2.2       3.5   4.2e+03      34      48 ..     232     246 ..     225     260 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-05
     zf-Di19  4 tCPyCgke.ltvkeLveHvedeHr 26
                 CP C+ke ++ ++L +H++++H 
  CCD24098.1 23 VCPICSKEfHNLQNLNNHLDVDHN 46
                355555533455555555555554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.8
     zf-Di19   3 ftCPyCgk 10 
                 ++CP Cg+
  CCD24098.1 103 VNCPKCGE 110
                 45777765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.5
     zf-Di19  34 CPvCaekvtkdlvaH 48 
                 C +C +k t  l +H
  CCD24098.1 232 CNICGQKFTVLLRKH 246
                 444444433333322 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5   4.8e-05     0.057       4      21 ..      24      41 ..      22      42 .. 0.95
   2 ?    0.3   0.4      0.75     9e+02       6      14 ..     112     120 ..     111     124 .. 0.82
   3 ?   -3.1   0.0         9   1.1e+04      10      17 ..     413     420 ..     413     420 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.8e-05
                 BTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz  4 CvlCdKyFksenaldnHl 21
                 C++C+K F++ ++l nHl
   CCD24098.1 24 CPICSKEFHNLQNLNNHL 41
                 *****************8 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.75
                  TTTBBBSSH CS
  zf-C2H2_jaz   6 lCdKyFkse 14 
                  +C++++k+ 
   CCD24098.1 112 YCKRHCKNI 120
                  8*****996 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 9
                  BBSSHHHH CS
  zf-C2H2_jaz  10 yFksenal 17 
                  +F+++n+l
   CCD24098.1 413 QFINDNVL 420
                  7****986 PP

>> UBZ_FAAP20  Ubiquitin-binding zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00057      0.68       3      25 ..      23      48 ..      21      49 .. 0.73
   2 ?   -0.8   0.1       1.2   1.5e+03       4      12 ..     232     240 ..     230     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00057
  UBZ_FAAP20  3 sCPmCqkefaprlsq....LDiDsHLA 25
                 CP+C+kef   l      LD+D  LA
  CCD24098.1 23 VCPICSKEFHN-LQNlnnhLDVDHNLA 48
                6********97.433444899997776 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
  UBZ_FAAP20   4 CPmCqkefa 12 
                 C +C ++f+
  CCD24098.1 232 CNICGQKFT 240
                 99*****97 PP

>> Prok-RING_1  Prokaryotic RING finger family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0069       8.2      16      31 ..      17      32 ..       9      34 .. 0.77
   2 ?   10.1   5.0    0.0005       0.6       3      31 ..      85     113 ..      83     123 .. 0.85
   3 ?   -1.6   5.7       2.2   2.6e+03       5      15 ..     230     240 ..     226     265 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0069
  Prok-RING_1 16 eedDiVvCpeCgtpyH 31
                 ++ D++vCp C   +H
   CCD24098.1 17 NAFDLIVCPICSKEFH 32
                 5668999999988877 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0005
  Prok-RING_1   3 tgkkCpvCgkelkeedDiVvCpeCgtpyH 31 
                  +++ C  Cg +l++   +V Cp+Cg  y 
   CCD24098.1  85 KDNLCHDCGGTLTKPTGMVNCPKCGELYC 113
                  5678*********************9884 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.2
  Prok-RING_1   5 kkCpvCgkelk 15 
                  ++C++Cg++++
   CCD24098.1 230 TECNICGQKFT 240
                  78999999997 PP

>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.78   9.4e+02      13      23 ..      21      31 ..      11      32 .. 0.81
   2 ?    9.7   8.4   0.00079      0.94       1      27 [.      89     116 ..      89     119 .. 0.89
   3 ?    6.9   3.2    0.0057       6.8       1      25 [.     232     257 ..     230     258 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.78
      zf-AN1 13 pfkCryCgkvF 23
                 + C+ C+k+F
  CCD24098.1 21 LIVCPICSKEF 31
                488*****998 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00079
      zf-AN1   1 CsfksCkkkdflp...fkCryCgkvFClkH 27 
                 C+  +C+  ++ p   ++C++Cg+ +C++H
  CCD24098.1  89 CH--DCGGTLTKPtgmVNCPKCGELYCKRH 116
                 66..799999988999************** PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0057
      zf-AN1   1 CsfksCkkkdflp...fkCryCgkvFCl 25 
                 C++  C++k ++     +Cr Cg+v C 
  CCD24098.1 232 CNI--CGQKFTVLlrkHHCRLCGNVVCD 257
                 775..99999766678***********7 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.7   3.2e+03      71      96 ..      22      31 ..       5      41 .. 0.62
   2 ?    7.6   2.1    0.0031       3.7      67      95 ..      83     111 ..      64     124 .. 0.77
   3 ?    5.6   2.2     0.013        16      69      95 ..     228     254 ..     201     267 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.7
                EEETTTS-EEECHHHHHS-TTTSSS- CS
        HypA 71 vrCreCgkefeleekalrCpkCgsad 96
                +                 Cp C+++ 
  CCD24098.1 22 I----------------VCPICSKEF 31
                3................566665543 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0031
                 E--EEEETTTS-EEECHHHHHS-TTTSSS CS
        HypA  67 vpvkvrCreCgkefeleekalrCpkCgsa 95 
                  +    C++Cg + ++ +  ++CpkCg+ 
  CCD24098.1  83 RDKDNLCHDCGGTLTKPTGMVNCPKCGEL 111
                 556678*****99987654789****985 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.013
                 -EEEETTTS-EEECHHHHHS-TTTSSS CS
        HypA  69 vkvrCreCgkefeleekalrCpkCgsa 95 
                 ++++C+ Cg++f++  ++ +C  Cg+ 
  CCD24098.1 228 ATTECNICGQKFTVLLRKHHCRLCGNV 254
                 7899*********6655678****975 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0017         2       2      20 ..      21      40 ..      20      43 .. 0.79
   2 ?    2.2   1.9      0.15   1.8e+02       2      10 ..     102     110 ..     101     114 .. 0.83
   3 ?    5.4   0.1     0.015        18       2      12 ..     229     239 ..     228     241 .. 0.88
   4 ?   -3.0   0.5       6.3   7.5e+03       4       9 ..     247     252 ..     246     252 .. 0.85
   5 ?   -2.1   0.0       3.2   3.8e+03       9      14 ..     309     314 ..     309     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0017
   zf-C2HC_2  2 lvpCpkCgRsF.npdrlekH 20
                l+ Cp+C+  F n   l +H
  CCD24098.1 21 LIVCPICSKEFhNLQNLNNH 40
                899********776666666 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.15
   zf-C2HC_2   2 lvpCpkCgR 10 
                 +v CpkCg 
  CCD24098.1 102 MVNCPKCGE 110
                 778****95 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.015
   zf-C2HC_2   2 lvpCpkCgRsF 12 
                 + +C +Cg +F
  CCD24098.1 229 TTECNICGQKF 239
                 679*******9 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 6.3
   zf-C2HC_2   4 pCpkCg 9  
                  C+ Cg
  CCD24098.1 247 HCRLCG 252
                 59***8 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 3.2
   zf-C2HC_2   9 gRsFnp 14 
                 gR+F+ 
  CCD24098.1 309 GRKFAL 314
                 9***95 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.078        93       3      12 ..      22      31 ..      21      32 .. 0.89
   2 ?    6.3   0.0    0.0075         9      21      33 ..      98     110 ..      94     112 .. 0.78
   3 ?   -1.4   2.9       1.9   2.3e+03       4      14 ..     231     241 ..     229     254 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.078
  zinc_ribbon_4  3 itCpsCkaky 12
                   i+Cp C++++
     CCD24098.1 22 IVCPICSKEF 31
                   99******99 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0075
  zinc_ribbon_4  21 akgvkvrCskCgh 33 
                    + +++v C+kCg+
     CCD24098.1  98 KPTGMVNCPKCGE 110
                    5578999****97 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.9
  zinc_ribbon_4   4 tCpsCkakyei 14 
                    +C  C+ k+++
     CCD24098.1 231 ECNICGQKFTV 241
                    67777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1412  (0.0787551); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 3508.12
//
Query:       CCD24099.1  [L=783]
Description: hypothetical protein NDAI_0C04390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-14   54.3  11.8       0.29   12.1   0.1    8.3  8  WD40         WD domain, G-beta repeat
      1e-08   35.4   5.6      0.045   14.0   0.1    6.2  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.05   12.9   8.0       0.65    9.3   0.3    4.5  5  WD40_like    WD40-like domain
        2.8    8.2   4.9         16    5.8   0.1    4.0  4  DUF1921      Domain of unknown function (DUF1921)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0015       6.7       9      38 .]      43      79 ..      29      79 .. 0.85
   2 !    8.0   0.0    0.0013       5.8       4      37 ..     133     167 ..     130     168 .. 0.82
   3 !   12.1   0.1   6.4e-05      0.29      13      38 .]     189     213 ..     176     213 .. 0.78
   4 !   10.9   0.1   0.00015      0.69      12      38 .]     244     272 ..     229     272 .. 0.78
   5 !   10.4   0.1   0.00022         1       3      35 ..     278     311 ..     276     314 .. 0.89
   6 ?    2.9   0.0     0.051   2.3e+02      10      32 ..     341     366 ..     336     370 .. 0.83
   7 ?    1.7   0.0      0.12   5.5e+02      11      28 ..     438     455 ..     428     461 .. 0.77
   8 ?   -2.9   0.0       3.5   1.6e+04      16      30 ..     490     504 ..     473     507 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0015
                SSSSEEEEEEETTSSE.........EEEE.ETTSEEEEEE CS
        WD40  9 GHssvtslafspdgaw.........lasG.sdDgtvriWd 38
                G   +t+l+fs+ ++          la G s +g++ iW+
  CCD24099.1 43 GN--ITALSFSHKSTTnkltpsslrLAVGrS-NGNIEIWN 79
                33..999999999999999999988999*66.*******8 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0013
                 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawlasGsdDgtvriW 37 
                 l+ ++   + ++sla + +++ la G+d+gtv + 
  CCD24099.1 133 LKNYDCNAGvIWSLAINESQDKLAVGCDNGTVVVI 167
                 66677775557*********************885 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 6.4e-05
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 v sla+++d ++++ G+ Dg +riW+
  CCD24099.1 189 VLSLAWNKD-DFVIGGCSDGRIRIWN 213
                 778888888.56676756*******8 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00015
                 S..EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 s..vtslafspdgawlasGsdDgtvriWd 38 
                 s  v+++ + p+ + ++sG+  g+v++Wd
  CCD24099.1 244 StlVWCVIYLPHTNQIVSGDSTGSVKFWD 272
                 2579***************66*******9 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00022
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvr 35 
                 ++++++ H  +v +l ++ +++ +++++ D+++ 
  CCD24099.1 278 LTQSFKSHeADVLCLTTDASNTHVFTAGVDRKIF 311
                 57899***999**************9999**996 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.051
                 S.SSEEEEE..EETTSSEEEEEETTS CS
        WD40  10 H.ssvtsla..fspdgawlasGsdDg 32 
                 H ++v++l+   s+  ++l+sG+  +
  CCD24099.1 341 HgNDVRALCsyQSKGADFLVSGGIEK 366
                 7779******************9555 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.12
                 SSEEEEEEETTSSEEEEE CS
        WD40  11 ssvtslafspdgawlasG 28 
                 ++++ +a spdg  l+ G
  CCD24099.1 438 QNINTCALSPDGEVLIVG 455
                 4599999******99877 PP

  == domain 8  score: -2.9 bits;  conditional E-value: 3.5
                 EEEETTSSEEEEEET CS
        WD40  16 lafspdgawlasGsd 30 
                 ++f ++++++++++d
  CCD24099.1 490 VKFIDNSKMVMCSTD 504
                 346677777776664 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.052   2.3e+02      49      69 ..      62      82 ..      21     105 .. 0.66
   2 !    6.7   0.1    0.0019       8.6      39      69 ..     141     171 ..     123     178 .. 0.85
   3 !   14.0   0.1     1e-05     0.045      37      80 ..     185     227 ..     179     250 .. 0.81
   4 !    5.4   0.0    0.0049        22      35      88 ..     241     293 ..     229     296 .. 0.86
   5 ?    3.9   0.0     0.015        66      27      58 ..     427     457 ..     395     480 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.052
  ANAPC4_WD40 49 dgklLavaysdgevrlldaes 69
                 +   Lav+ s+g++++ +  +
   CCD24099.1 62 SSLRLAVGRSNGNIEIWNPRN 82
                 455677888888877766544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0019
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaes 69 
                  + + sLa +++   Lav++++g+v ++d++ 
   CCD24099.1 141 GVIWSLAINESQDKLAVGCDNGTVVVIDISG 171
                  5677999999999**************9875 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 1e-05
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  ++ +v sLaW++d+ +   ++sdg++r+ +++++++  +  +++
   CCD24099.1 185 QEARVLSLAWNKDDFV-IGGCSDGRIRIWNVQKTTTTTTTATEH 227
                  577899****998755.57*************999888776665 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0049
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  + e+  v ++ + p  + ++ + s g+v++ d + +++ +s++ ++ + v cl+
   CCD24099.1 241 KRESTLVWCVIYLPHTNQIVSGDSTGSVKFWDFQYATLTQSFKSHEAD-VLCLT 293
                  56677788999999999****************************996.99986 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.015
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavays 58 
                  + v +l + k+d++++  a +pdg++L v+  
   CCD24099.1 427 KLVCKL-TLKDDQNINTCALSPDGEVLIVGRP 457
                  333333.5677788888888888888888754 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.023   1.1e+02     270     299 ..     133     164 ..     120     167 .. 0.81
   2 ?   -1.4   0.0      0.26   1.2e+03     204     228 ..     195     219 ..     175     240 .. 0.61
   3 ?    0.8   0.1     0.054   2.4e+02      92     179 ..     256     345 ..     224     355 .. 0.70
   4 ?    9.3   0.3   0.00014      0.65       7      74 ..     444     516 ..     438     525 .. 0.66
   5 ?   -0.0   0.2     0.098   4.4e+02     232     272 ..     533     575 ..     524     603 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.023
   WD40_like 270 fkllesgvGviydmkfen..ntiyvgGeaGlk 299
                 +k ++++ Gvi+++++++  ++++vg ++G  
  CCD24099.1 133 LKNYDCNAGVIWSLAINEsqDKLAVGCDNGTV 164
                 7889*********9998522669999999865 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.26
   WD40_like 204 lvddylivGgsfkyllliNiklnvn 228
                 + dd++i G+s   + + N++  + 
  CCD24099.1 195 NKDDFVIGGCSDGRIRIWNVQKTTT 219
                 3345555555555666666665444 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.054
   WD40_like  92 ddklliGtnkGsiyvfskd.lqleevllgqsseIkeikie..nnkiysLsesafivfdlfsqnieykisvkdiktfeiienkdilligteg 179
                  ++++ G ++Gs+  ++ +  +l + + +++++++ ++++  n  +++   ++ i f+  +++   ++s kd ++++ ++ ++ l+ g++ 
  CCD24099.1 256 TNQIVSGDSTGSVKFWDFQyATLTQSFKSHEADVLCLTTDasNTHVFTAGVDRKI-FQFSQNSSSNQLSGKDSNAIKWVNASNRLFHGNDV 345
                 5788889999999885433025667778888888777654337788888777655.44566667788889999999999888888877765 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00014
   WD40_like   7 diskkgslilyGgkddkctvlkleslesvsives......fedSvifvklldddlilvvtlDGtillsllenee 74 
                  +s++g+++++G    + ++++l++   +  v++      ++    fvk++d+ ++++++ D  i   +le ++
  CCD24099.1 444 ALSPDGEVLIVGRP-STTKLFHLQTMLNKLKVTKldndylLKTGTKFVKFIDNSKMVMCSTDDEIFSLDLEADN 516
                 56777777777644.3445555555444444444000333456778*******************999998877 PP

  == domain 5  score: -0.0 bits;  conditional E-value: 0.098
   WD40_like 232 lrlevegiskikk..isefvvafsTlcgkvgigDiRdketfkl 272
                  ++++ +i+k+++  +s    ++s +cg+v ++D+  +++  +
  CCD24099.1 533 SSIKIPYINKVNHldVSTTHAVVSRTCGAVDVVDLTTGKSTPI 575
                 55677777777752246677788999*******9988877543 PP

>> DUF1921  Domain of unknown function (DUF1921)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.7   7.7e+03       9      19 ..      22      32 ..      21      37 .. 0.89
   2 ?    5.8   0.1    0.0036        16      26      50 ..      54      78 ..      41      79 .. 0.83
   3 ?   -0.7   0.0      0.39   1.8e+03      35      45 ..     143     153 ..     137     166 .. 0.68
   4 ?    1.0   0.3      0.11     5e+02      43      50 ..     205     212 ..     201     213 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.7
     DUF1921  9 tvsGsqqkLlv 19
                t++ s q+Llv
  CCD24099.1 22 TMTNSHQELLV 32
                8999*****98 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0036
     DUF1921 26 ssPgqvAsGafseAvntdnGriRiW 50
                s  ++    +  +Av  +nG+i iW
  CCD24099.1 54 STTNKLTPSSLRLAVGRSNGNIEIW 78
                5566677778899************ PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.39
     DUF1921  35 afseAvntdnG 45 
                  +s+A+n++  
  CCD24099.1 143 IWSLAINESQD 153
                 57777777654 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.11
     DUF1921  43 dnGriRiW 50 
                 + GriRiW
  CCD24099.1 205 SDGRIRIW 212
                 68****** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       697  (0.0388756); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 5141.93
//
Query:       CCD24100.1  [L=1039]
Description: hypothetical protein NDAI_0C04400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-91  305.1   4.8    4.4e-91  305.1   4.8    2.5  3  Cnd3      Nuclear condensing complex subunits, C-term domain
      4e-05   23.5   0.1       0.65   10.4   0.0    4.6  4  HEAT      HEAT repeat
     0.0035   17.7   0.0        0.5   10.8   0.0    3.7  3  HEAT_2    HEAT repeats
  ------ inclusion threshold ------
      0.012   15.7   2.5        1.2    9.4   0.0    4.0  3  CNOT11    CCR4-NOT transcription complex subunit 11
        1.6    9.0   6.6         12    6.1   0.1    4.1  5  DUF5071   Domain of unknown function (DUF5071)


Domain annotation for each model (and alignments):
>> Cnd3  Nuclear condensing complex subunits, C-term domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.27   9.7e+02     229     278 ..      89     141 ..      36     159 .. 0.62
   2 ?   -0.7   0.0      0.17   6.2e+02      30     138 ..     131     233 ..     123     237 .. 0.61
   3 !  305.1   4.8   1.2e-94   4.4e-91       2     292 ..     568     850 ..     567     852 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.27
                 HHHHHHHHT-GGGS---------TT........--HHHHHHHHHHHHCCCS-T CS
        Cnd3 229 vleqlvdltdprklvnkteeeeskseseke...eelhldlaleilkelekkes 278
                 ++++++ l +++ l n+t+ +e+++e e+    +   ++++  il+ +e+k++
  CCD24100.1  89 IAAFVASLDRENDLINQTRGNEDTDENEEPtmfARFIDQFVRHILRGIESKDK 141
                 34444455557777777777777776666666666666666666666666654 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.17
                 THHHHHC-SSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH-CGGGGGGHH..............HHHHHHHHHH CS
        Cnd3  30 lilpavrskeaairelglkcLglfclldkklakenlklflqalskgneelkiialkaifDllllhglevldkekkedsdeeeeesessksllkllykaL 128
                 +il++++sk++++r + +  L   +    ++ +e   l++ +l+k     +i   +a++ + +++ l+ +++ + + +d  + +++++++ + +l+ka 
  CCD24100.1 131 HILRGIESKDKNVRFRVIQILVVIMDNIGEIDEELYNLLIWSLKK-----RIYDKEALVRIQTIFCLTKFQDDSPSSPD-GTLSEDDMSEATLILMKAI 223
                 666777777777777666655444444446666666666666666.....45555555555555556555444443333.2222367888888999999 PP

                 C-TT-HHHHH CS
        Cnd3 129 dsednpelqa 138
                 +++++pe++ 
  CCD24100.1 224 QNDSSPEVRR 233
                 9888888875 PP

  == domain 3  score: 305.1 bits;  conditional E-value: 1.2e-94
                 HHHHHHHHHHT--S-TTSCCHHHHHHHHTHHHHHC-SSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH-CGGGG CS
        Cnd3   2 cLaitqelLenvsssleenpsleslleslilpavrskeaairelglkcLglfclldkklakenlklflqalskgneelkiialkaifDllllhglevld 100
                 cL+ +  +Le+v+++ ++n+ ++sl+++li+pavr++e+ irelg+++Lgl+cll+k+la+enl+++++++skgn++lk  al++i+Dl+++hg+ ++d
  CCD24100.1 568 CLTRSAAMLELVHTPIDQNVLITSLIDTLITPAVRNNETTIRELGIRNLGLCCLLNKDLAIENLYILGMCISKGNSTLKTLALQIIVDLFCVHGTAIVD 666
                 9************************************************************************************************** PP

                 GGHH..............HHHHHHHHHHC-TT-HHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHH-GGGTT-HHHHHHHHHHHHHHHCC-HHHHHHH CS
        Cnd3 101 kekkedsdeeeeesessksllkllykaLdsednpelqaiaaeglcKLllagiltdselLsrLvllyFnpeteenqrLrQcLsvffpvYafsspknqell 199
                  e+k+ds           sl+k++yk+L++++ pe+q++aaeglcKL la+i+td++l+++Lvl+yF+pe+++n+rL Q++++++pvY+fs+ ++qe++
  CCD24100.1 667 GEGKVDSV----------SLHKIFYKVLKNNEAPECQVVAAEGLCKLYLADIFTDDDLFEALVLAYFSPENSHNERLVQVFAFCIPVYCFSHVSHQERM 755
                 ****9886..........********************************************************************************* PP

                 HHHHHHHHHHHHHHCH--...........-SHCHHHHHHHHHHHHT-GGGS---------TT.....--HHHHHHHHHHHHCCCS-THH.HHHHHHHHH CS
        Cnd3 200 aeiflptlrtllnapeespla........eeevspskvleqlvdltdprklvnkteeeesksesekeeelhldlaleilkelekkeskeekkaliklLs 290
                 ++++ ++l++l+ +++ +++         + +++p+ +l+qlv +tdprk+v+k+++e+sk +      ++l + l+ilk l + e+k +kk+li +L+
  CCD24100.1 756 SKAAADILWRLCMKWDHIENTnhdnegqsTAMMKPNVILQQLVYWTDPRKVVGKQQDEISKIN------YQLGFLLDILKSLATIEKKVIKKMLIINLN 848
                 ****************9977799**********************************999875......5666*************************9 PP

                 H- CS
        Cnd3 291 kl 292
                  +
  CCD24100.1 849 IF 850
                 66 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.028     1e+02       2      30 ..     129     157 ..     128     158 .. 0.89
   2 ?    3.5   0.0      0.03   1.1e+02       5      27 ..     173     195 ..     169     198 .. 0.84
   3 !   10.4   0.0   0.00018      0.65       5      25 ..     219     240 ..     218     241 .. 0.88
   4 ?   -2.2   0.0       2.1   7.5e+03       8      27 ..     683     703 ..     679     704 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.028
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaev 30 
                 + ++l+ +++++ +VR  +++ L+ ++ +
  CCD24100.1 129 VRHILRGIESKDKNVRFRVIQILVVIMDN 157
                 6789999****************999875 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.03
                 HHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgal 27 
                 l k + D+++ VR  ++ +L+++
  CCD24100.1 173 LKKRIYDKEALVRIQTIFCLTKF 195
                 667788**************987 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00018
                 HHHHH.T-SSHHHHHHHHHHHH CS
        HEAT   5 llkll.sDpspeVReaAakaLg 25 
                 l+k++ +D+speVR+a+ ++L+
  CCD24100.1 219 LMKAIqNDSSPEVRRACMLNLV 240
                 788988***********99986 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 2.1
                 HH.T-SSHHHHHHHHHHHHHH CS
        HEAT   8 ll.sDpspeVReaAakaLgal 27 
                  l + ++pe    Aa+ L++l
  CCD24100.1 683 VLkNNEAPECQVVAAEGLCKL 703
                 5658899999999***99987 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00014       0.5      10      83 ..     137     235 ..     129     239 .. 0.57
   2 !    7.3   0.0    0.0017       6.2       4      49 ..     219     262 ..     216     305 .. 0.73
   3 ?   -0.7   0.0      0.55     2e+03       2      41 ..     866     905 ..     831     914 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00014
      HEAT_2  10 ndpdpevrraairaLg....rig..npealpaLvell....ededpavRraaaeaLgaig......dpe..........alpaLkellddddddvvRea 82 
                 +++d++vr ++i+ L     +ig  ++e+ ++L+  l     d+++ vR + +  L +++        +          a  +L ++ ++d++++vR+a
  CCD24100.1 137 ESKDKNVRFRVIQILVvimdNIGeiDEELYNLLIWSLkkriYDKEALVRIQTIFCLTKFQddspssP-DgtlseddmseATLILMKAIQNDSSPEVRRA 234
                 5777888888888888777644322345544444444211146677788888888888853322220.1333333333377778888888888888877 PP

      HEAT_2  83 A 83 
                  
  CCD24100.1 235 C 235
                 5 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0017
      HEAT_2   4 LlqalendpdpevrraairaLgrignpealpaLvellededpavRr 49 
                 L++a++nd++pevrra   +L   +n  ++p+++e ++d ++  Rr
  CCD24100.1 219 LMKAIQNDSSPEVRRACMLNLV--NNSVTRPYILERARDVNAINRR 262
                 8899************998885..6777788888888886655555 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.55
      HEAT_2   2 daLlqalendpdpevrraairaLgrignpealpaLvelle 41 
                 ++L  ++endp + + r+ ++ L r  ++ +++a+ + l+
  CCD24100.1 866 ELLEDIIENDPMDTTCRNSLDKLHRHLSDVIQEAMERNLS 905
                 5677777778888888888888888777777777777664 PP

>> CNOT11  CCR4-NOT transcription complex subunit 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00032       1.2      49      93 ..      55     100 ..      15     110 .. 0.80
   2 ?    3.2   0.1     0.026        92      50      87 ..     120     156 ..     102     162 .. 0.85
   3 ?   -1.6   0.1      0.77   2.8e+03      31      90 ..     569     627 ..     550     637 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00032
      CNOT11  49 elpkefvhkyisnciksceeak.dkeaqerlvrlvcvflqsLirnk 93 
                 +  ++  +++ ++c++++   k ++   +r v+l++ f+ sL r++
  CCD24100.1  55 QGYEDAFNYWFNKCVTKILPLKkNETVGDRIVKLIAAFVASLDREN 100
                 55566778899**********9889999*************98876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.026
      CNOT11  50 lpkefvhkyisnciksceeakdkeaqerlvrlvcvflq 87 
                 +   f+ +++++ ++ +e+ kdk+ + r ++++ v + 
  CCD24100.1 120 MFARFIDQFVRHILRGIES-KDKNVRFRVIQILVVIMD 156
                 45679************97.889999*****9988875 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.77
      CNOT11  31 ldvtlhslevvnrltseaelpkefvhkyisnciksceeakdkeaqerlvrlvcvflqsLi 90 
                 l+ +   le+v+  + ++ l ++++ + i+  +++ e++  +e+  r + l c++ ++L 
  CCD24100.1 569 LTRSAAMLELVHTPIDQNVLITSLIDTLITPAVRNNETTI-RELGIRNLGLCCLLNKDLA 627
                 5667778888888666677888888888888888877766.6666777778787777665 PP

>> DUF5071  Domain of unknown function (DUF5071)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.1     4e+03      36      99 ..      15      89 ..      14     104 .. 0.62
   2 ?    3.6   0.1     0.022        78      49      85 ..     121     155 ..     118     181 .. 0.78
   3 ?   -3.7   0.0       3.9   1.4e+04      75     114 ..     219     259 ..     208     263 .. 0.71
   4 ?   -2.7   0.0         2     7e+03      24      60 ..     282     320 ..     272     327 .. 0.71
   5 ?    6.1   0.1    0.0035        12      25      67 ..     859     903 ..     846     925 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
                -TTSTTHHHHHHHHHHTGGGTHHHHHHH..H.........HSS-HHHHHHHHHHHGGGS-HHHHHHHHHHHHHHH CS
     DUF5071 36 DlNwPiaspiaelLarfpeelvkeiaei..L.........eknDeewkyfvleflveklpveskkklkeelerlv 99
                D+N  i++++a++ ++ +++ + + ++i  L         ++  + ++y+  +++ + lp ++++ + +++ +l+
  CCD24100.1 15 DVNTKIFRSVADVFQKAQSTYAGHRKHIavLkkiqlkaidQGYEDAFNYWFNKCVTKILPLKKNETVGDRIVKLI 89
                666667777777777766666555554433244444444566667777777777777777777777666666655 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.022
                 HHHTGGGTHHHHHHHHHSS-HHHHHHHHHHHGGGS-H CS
     DUF5071  49 LarfpeelvkeiaeiLeknDeewkyfvleflveklpv 85 
                  arf +++v++i   +e++D++ ++ v+++lv   ++
  CCD24100.1 121 FARFIDQFVRHILRGIESKDKNVRFRVIQILVV--IM 155
                 6789999999999999*************9984..33 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.9
                 HHHHHGGGS-HHHHHH.HHHHHHHHHTS--SSHHHHHHHHH CS
     DUF5071  75 vleflveklpveskkk.lkeelerlveeptedEkeeeldel 114
                 ++++++++ + e++   + + +++ v++p   E++++++ +
  CCD24100.1 219 LMKAIQNDSSPEVRRAcMLNLVNNSVTRPYILERARDVNAI 259
                 56677777776666666888888888888888888888765 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2
                 GGGHHHHHGG.GS-TTSTTHHHHHHHHHHT.GGGTHHHH CS
     DUF5071  24 kplvpeLLeW.lqDlNwPiaspiaelLarf.peelvkei 60 
                   ++ +L+eW l D    + +++ +l+ ++ ++ l  + 
  CCD24100.1 282 TSIIDKLIEWgLDDRETHVSKECGKLISHHwLNSLDGDL 320
                 467899999977888888888888888777555555555 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.0035
                 GGHHHHHGGGS-T..TSTTHHHHHHHHHHTGGGTHHHHHHHHHSS CS
     DUF5071  25 plvpeLLeWlqDl..NwPiaspiaelLarfpeelvkeiaeiLekn 67 
                   +++LLe l D+  N P+   +++ L +   +l + i+e +e+n
  CCD24100.1 859 ATLKNLLELLEDIieNDPMDTTCRNSLDKLHRHLSDVIQEAMERN 903
                 57899*******888***********************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1039 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1714  (0.0955993); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.86u 0.32s 00:00:01.18 Elapsed: 00:00:00.49
# Mc/sec: 6384.47
//
Query:       CCD24101.1  [L=1433]
Description: hypothetical protein NDAI_0C04410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-71  240.1   3.7    1.7e-35  122.7   0.3    3.0  3  VASt       VAD1 Analog of StAR-related lipid transfer domain
    2.1e-28   98.5   0.1    4.2e-28   97.5   0.1    1.6  1  GRAM       GRAM domain
  ------ inclusion threshold ------
        1.4    9.3   4.1        2.2    8.6   0.0    3.4  4  zf-CCCH_7  Chromatin remodeling factor Mit1 C-terminal Zn fin


Domain annotation for each model (and alignments):
>> VASt  VAD1 Analog of StAR-related lipid transfer domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.4   8.6e+03      49      71 ..     271     310 ..     242     317 .. 0.64
   2 !  117.3   0.0   1.3e-37   7.6e-34       3     154 .]     855     996 ..     853     996 .. 0.93
   3 !  122.7   0.3   2.8e-39   1.7e-35       5     154 .]    1076    1214 ..    1072    1214 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.4
                 .......................EEEEEEEE--SSSS-SE CS
        VASt  49 e.................kgkltRklsytkplkgsigpkq 71 
                 +                 +g+  R  s+ k+l + + p++
  CCD24101.1 271 NgsrnksnhnndtvihspPGNVNRSTSFLKHLDNLLSPSS 310
                 1444444444455555667888999999999999987765 PP

  == domain 2  score: 117.3 bits;  conditional E-value: 1.3e-37
                 EEEEESS-HHHHHHHHHSS-THHHHHHHHH.TT-BS-H.HHSE.........EEEEEEEE--SSSS-SEEEEEEEEE..EEEEETT.EEEEEEEEE-T. CS
        VASt   3 veevlpisvkalfellfgdkseflkkfleerqkttdisvgpweeakekgkltRklsytkplkgsigpkqtkvtetqtilveeddly.yivvvtttktpl 100
                  +++++++++++ ++lfg ++++l+ + +++ k  +++++p  +    ++++R++sytkp++ sigp++t++ +t+   ++++dl+ +++v + +ktp 
  CCD24101.1 855 TDTTFDAPLGKVVNILFGPDTSYLEGIIKAQ-K--NYAISPIPNLL--ETKHREYSYTKPISFSIGPSKTECLITDD--LDHYDLNdSVKVTSYSKTP- 945
                 6899**************************6.7..55559997666..59***************************..99999999***********. PP

                 TSTTTTSEEEEEEEEEEEETTTE..E.EEEEEEEEEESS--TTHHHHHHHHHHH CS
        VASt 101 dvPygdsFsvetryvitwgsknskstcrltvstkvefsksswlkgiIekgalkg 154
                 dvP+g++Fsv + y +tw+++n+  t rl v++ v++ ++swlkg Iekg+ +g
  CCD24101.1 946 DVPSGSAFSVRSVYLLTWAKNNK--T-RLIVYLSVVWNSKSWLKGPIEKGTFDG 996
                 ******************77777..5.************9***********987 PP

  == domain 3  score: 122.7 bits;  conditional E-value: 2.8e-39
                  EEESS-HHHHHHHHHSS-THHHHHHHHH.TT-BS-H.HHSE.........EEEEEEEE--SSSS-SEEEEEEEEE..EEEEETT.EEEEEEEEE-T. CS
        VASt    5 evlpisvkalfellfgdkseflkkfleerqkttdisvgpweeakekgkltRklsytkplkgsigpkqtkvtetqtilveeddly.yivvvtttktpl 100 
                  ++++++++++++llfgd+ ++ k++le++ ++ +i  ++    ++    +R+++ytk+l++s+gpkqt+++ t++  +e+ d + yi+v + +k   
  CCD24101.1 1076 ANIKAPLGTVYQLLFGDDPSYVKRILEKQ-NNINI--SEI---PKFVDDKREITYTKKLNNSMGPKQTRCVVTEE--IEHMDIQnYIMVRQIVKSL- 1163
                  57899***********************6.87777..444...4556689*************************..99****8899999999988. PP

                  TSTTTTSEEEEEEEEEEEETTTE..E.EEEEEEEEEESS--TTHHHHHHHHHHH CS
        VASt  101 dvPygdsFsvetryvitwgsknskstcrltvstkvefsksswlkgiIekgalkg 154 
                  dvP+g++Fsv+t++ ++wgs+n+  t +++v t+v+++++s++kg Iekg+++g
  CCD24101.1 1164 DVPSGNNFSVHTKTYLSWGSNNT--T-NMKVVTNVVWTGRSMIKGPIEKGSIDG 1214
                  ******************99888..5.************99**********997 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.1     7e-32   4.2e-28       2     112 ..     646     754 ..     645     756 .. 0.97

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 7e-32
                 HHHHHS--..--TT--EEEEEEEEEESS.SEEEEEEEEESSEEEEEE-STT---EEEEEGGGEEEEEE....-TT-TT-EEEEESS-..EEEEE--TTH CS
        GRAM   2 lfrkkfke..llpeEkllatykCyllrdggpvqGrlyltnyrlcFrskplgsskkvvlpladikriekstsaanllengiqvetsskdlelaFagfvtr 98 
                 +f++ fk+  +++ E+l+ + +C+l+rd ++ qGr+y+t++++cF+s++lg+  +vv+p+++i++iek + +a +++ngi ++t +   ++ Fa+f++r
  CCD24101.1 646 DFHNLFKDsgINQTERLIVDHSCALSRD-ILLQGRMYITDQHICFYSNILGWVSSVVIPFKEIVQIEK-KTTAGIFPNGIVIDTLHT--KYIFASFISR 740
                 69999**99*******************.***************************************.******************..8********* PP

                 HHHHHHHHHHHHH- CS
        GRAM  99 deaiefieellkka 112
                 d ++++i+++++++
  CCD24101.1 741 DATFDLITDVWNQI 754
                 ***********987 PP

>> zf-CCCH_7  Chromatin remodeling factor Mit1 C-terminal Zn finger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.88   5.3e+03      18      61 ..     156     199 ..     152     206 .. 0.80
   2 ?   -2.0   0.2      0.77   4.6e+03       4      45 ..     463     504 ..     461     530 .. 0.76
   3 ?   -2.3   0.1         1     6e+03      18      36 ..     759     777 ..     756     802 .. 0.77
   4 ?    8.6   0.0   0.00038       2.2      32      65 ..    1092    1125 ..    1066    1150 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.88
                 HHT-----------B-----S--S-----EESS---HHHHHHHH CS
   zf-CCCH_7  18 rkvekseyvrelekDdpvfsykviekehrLvansvsklvldnfl 61 
                  k+e +   +++ + +  f++++  +e  Lv +   + ++   +
  CCD24101.1 156 SKIETPSMAKHITTQSQEFPNRLPTPESALVQEPTQESIFTSIF 199
                 57788888888888999999999999999999888888877655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.77
                 SS-HHHHHHHHHHHHHT-----------B-----S--S---- CS
   zf-CCCH_7   4 eaaktlkiinlevkrkvekseyvrelekDdpvfsykviekeh 45 
                 + ++ l+ ++ ++ +++ +s y+   +    v ++ v ++ h
  CCD24101.1 463 KHTRALNGMENKNIESIRNSSYIDLAHHAKEVLNNTVANNSH 504
                 556677778888999999999998777777777666666655 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1
                 HHT-----------B---- CS
   zf-CCCH_7  18 rkvekseyvrelekDdpvf 36 
                 r + ks +v+++++++p  
  CCD24101.1 759 RHLAKSSEVINSNMESPFS 777
                 6778888888888888754 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00038
                  B-----S--S-----EESS---HHHHHHHHHTT- CS
   zf-CCCH_7   32 DdpvfsykviekehrLvansvsklvldnflalys 65  
                  Ddp + ++++ek++++   +++k+v d+   +y+
  CCD24101.1 1092 DDPSYVKRILEKQNNINISEIPKFVDDKREITYT 1125
                  *************************887544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1324  (0.0738468); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.26s 00:00:01.19 Elapsed: 00:00:00.45
# Mc/sec: 9498.35
//
Query:       CCD24102.1  [L=183]
Description: hypothetical protein NDAI_0C04420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-25   87.0   0.1    1.3e-24   86.0   0.1    1.6  1  Skp1           Skp1 family, dimerisation domain
    3.5e-15   55.9   0.3    1.7e-07   31.3   0.2    2.5  2  Skp1_POZ       Skp1 family, tetramerisation domain


Domain annotation for each model (and alignments):
>> Skp1  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0   0.1   1.5e-28   1.3e-24       1      48 []     133     180 ..     133     180 .. 0.98

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 1.5e-28
        Skp1   1 kgLldltcktvAdmikgktpeeiReiFnIenDftpEEeeeirkEneWa 48 
                 k+Lld +ck vA mi+g++peeiR +FnI+nDftpEEe++ir+EneWa
  CCD24102.1 133 KPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 180
                 78*********************************************8 PP

>> Skp1_POZ  Skp1 family, tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.2e-08   0.00011       2      37 ..       8      43 ..       7      49 .. 0.93
   2 !   31.3   0.2   1.9e-11   1.7e-07      31      63 .]      56      88 ..      55      88 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 1.2e-08
                EEEEEETTSCEEEEEHHHHTTSHHHHHHHHCTCCCG CS
    Skp1_POZ  2 sivLqSsDgesfeveeavakkSktikhmiedlgddd 37
                 +vL+S  ge+f v++++a++S ++k+ ++d+ d++
  CCD24102.1  8 HVVLVSGEGEKFTVDRKIAERSLLLKNYLNDMHDSN 43
                59******************************8875 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 1.9e-11
                HCTCCCGTTCEEETTS-HHHHHHHHHHHHHCHH CS
    Skp1_POZ 31 edlgdddkpriplpnvtskiLekvieYckhhkk 63
                ed+ ddd+   p+pnv s +L+kvie+++hhk+
  CCD24102.1 56 EDDDDDDEIVMPVPNVRSSVLQKVIEWAEHHKD 88
                78888888789********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       641  (0.0357521); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1293.21
//
Query:       CCD24103.1  [L=468]
Description: hypothetical protein NDAI_0C04430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-81  274.7  20.1    4.8e-64  217.1  13.0    2.0  2  Peroxin-3  Peroxin-3
  ------ inclusion threshold ------
      0.034   12.8   0.0      0.089   11.5   0.0    1.7  1  CBP_GIL    Cellulose biosynthesis GIL


Domain annotation for each model (and alignments):
>> Peroxin-3  Peroxin-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.7   3.5e-21   3.1e-17       2     101 ..      12     116 ..      11     123 .. 0.89
   2 !  217.1  13.0   5.4e-68   4.8e-64     166     470 .]     123     465 ..     112     465 .. 0.89

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 3.5e-21
   Peroxin-3   2 flrrnrrklaitagvvgag........YlakqYvlkkleearerlsseriakenLrrRFeqnqeDctfTvlaLLPtlteqile.aldvEeitqeLqqkk 91 
                 +l+r+r kl+++++ ++++        Yl+k++++k+    + ++++ ++ +e+++rRF+q+qeD+  Tv++LLP++++ + +  l +++i++ +++ k
  CCD24103.1  12 LLQRHRGKLIFSIAGIATLfttgsialYLLKRWLYKQ----QLKITRAHFLREQMKRRFNQTQEDSLHTVYELLPVVEMVLDQnGLQLDSIIYDIKNVK 106
                 68*********999999888999**************....**************************************998758**********9999 PP

   Peroxin-3  92 aeraarssea 101
                 ++ +  s+ +
  CCD24103.1 107 KNVKGGSEVE 116
                 8766555444 PP

  == domain 2  score: 217.1 bits;  conditional E-value: 5.4e-68
   Peroxin-3 166 prksKaeLWnelkiksitRtltliYtlslLtLltriQLnlLgRrsYLssvvslakeeeteeeeeee..........sllseatislennd......... 245
                 +  sKaeLWn+l++ksi++++t+ Y++s+L+Lltr+QLn+L+R +YL++ +++  e+e   +e+++                   ++            
  CCD24103.1 123 KFLSKAELWNQLTLKSIIKLVTISYMTSSLFLLTRLQLNILTR-EYLEDTIKISAENEIIPKENDTscsvtgwisnA--------WS--Vwtgqrsses 210
                 5569**************************************9.6*************9988888766444433320........22..1335556777 PP

   Peroxin-3 246 .........deeeeqeegedeeterkYLtfSWWLLnrGWkdvaerVeaaVeevfgslslkdelsleelsellkevrkkveketeee.ekrsdflsillP 334
                          +  +++++++ +++e+++L++SWWLLn+GW ++++ +e+ ++e+f++l++kde++l e+s+ l++v++k++  + ++  ++ ++ ++llP
  CCD24103.1 211 ttvkqnddtELLQHDKTQVAYINEQAFLSLSWWLLNKGWFNYEQTIETIIREEFSNLKPKDEITLIEFSSKLTNVFQKINRIILSTdGSNLNLKAVLLP 309
                 888888776777888999**************************************************************88877768999999***** PP

   Peroxin-3 335 preeeeevLresgil.sleeleeesssLrkLldETsdliespdfslvleslldegfstllesleaevafkkkesasssekaeee............... 417
                 + ++e+++L+++  + sl  l+++++ + kL+ ET++++  +++ +v+e+l++e+f++++  +e++v +kkk + ++  +++++               
  CCD24103.1 310 DITMEQFLLQQTLPSkSLVVLKDNKELFHKLVGETKKCLGTSASLIVFETLINECFQYIMADVESSVIKKKKRKPTTPDAPAASaealqnnegeeeekq 408
                 **************97777889999999***************************************9999987777776666699*********9999 PP

   Peroxin-3 418 eeeeeekkvkLAkllpvlsrqahailng....vpneylealesvreLeafsAvvYss 470
                 +++ +e ++++A+  +++++++++++++     +n++l++l+s++ L+++sA v+s+
  CCD24103.1 409 KDMLSEDTFQVAAYAISCKDCSNVMVKKpernEENKFLTRLDSLNVLDDLSAGVFSN 465
                 88899**********************9666557*********************97 PP

>> CBP_GIL  Cellulose biosynthesis GIL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   9.9e-06     0.089     154     216 ..      10      73 ..       2      86 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.9e-06
     CBP_GIL 154 vdalrsklqeehrvlaGlAsLrsqqdellydvafWrnekgvladqalsLrfd.egrlslaeeae 216
                 ++ l+ ++ +   ++aG+A+L +++  +ly +++W  ++++   +a+ Lr++ ++r+   +e++
  CCD24103.1  10 RNLLQRHRGKLIFSIAGIATLFTTGSIALYLLKRWLYKQQLKITRAHFLREQmKRRFNQTQEDS 73 
                 45566788888999**************************************777777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1075  (0.0599587); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3321.04
//
Query:       CCD24104.1  [L=522]
Description: hypothetical protein NDAI_0C04440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-23   80.8   0.0    1.2e-22   79.9   0.0    1.4  1  Thioredoxin_7   Thioredoxin-like
    4.7e-15   55.1   0.2    1.1e-14   54.0   0.2    1.7  1  UBA_4           UBA-like domain
    1.3e-14   54.2   0.0    3.2e-14   52.9   0.0    1.7  1  UBX             UBX domain
    0.00014   21.9   0.0    0.00037   20.6   0.0    1.7  1  C2-set          Immunoglobulin C2-set domain
  ------ inclusion threshold ------
      0.043   13.8   0.0      0.078   12.9   0.0    1.3  1  Thioredox_DsbH  Protein of unknown function, DUF255
      0.092   13.2   0.0       0.18   12.3   0.0    1.5  1  Thioredoxin_2   Thioredoxin-like domain


Domain annotation for each model (and alignments):
>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0     4e-26   1.2e-22       5      83 .]     232     316 ..     227     316 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 4e-26
                    SHHHHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.......-TT---SSEEEEE-T CS
  Thioredoxin_7   5 dldealakaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdani......leldeqgvPvvafldp 83 
                    +l+ a+ ka++++k++++++++s+ f+Cqal+rd++s+++vk++l+++f++l++++++r+a+       l  +++ +P++a+ldp
     CCD24104.1 232 NLEGARMKARKKNKWIMINIQDSGVFQCQALNRDLWSSKDVKRLLKKNFIFLQYQYESRNAEPylnfypLPNKKDDLPHIAILDP 316
                    588999********************************************************97555444444466********9 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.2   3.5e-18   1.1e-14       1      42 [.       3      45 ..       3      46 .. 0.94

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 3.5e-18
       UBA_4  1 deliaqFqaiTGa.deekArqlLeannWdLerAislyFdsgea 42
                +e+i++F+aiT+a ++e A+q+L++++++L++Aisl+F++g++
  CCD24104.1  3 QEQIDNFMAITSAeTPELATQFLDMAGGNLDIAISLFFEHGGN 45
                79***********777************************975 PP

>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   1.1e-17   3.2e-14       2      81 .]     439     518 ..     438     518 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 1.1e-17
                 TTSSEEEEEEEETTSTEEEEEEE.SSSBHHHHHHHHHHHCCCCC.TSEEEEETTTTEEGGCCCCSBCCCCTTTSCEEEEEEE CS
         UBX   2 eaedatrlqiRlpdGsrlvrrFk.ksdtlesvyeyVdsklfeke.epFqLltsfPrreltksdkktLsdlgllpnstlvlee 81 
                 ++  +tr+qiR+ dG+r+vrr +  +d+++++ye V+s+ ++ + + F+L +++++++++k d +++sd+ +l+ns+l+le+
  CCD24104.1 439 KPGITTRIQIRTGDGKRIVRRVNaMDDKVRTLYEIVKSEIEGYDsCAFTLSDHQRNDLIDKVD-MSISDA-GLKNSSLLLEK 518
                 56679******************7799***********999876367***************9.******.********995 PP

>> C2-set  Immunoglobulin C2-set domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.2e-07   0.00037      19      63 ..     220     262 ..     214     279 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.2e-07
                 EEE.TCCECEEEEEEESSEEEEEECSCEEEEE--SGCSSEEEEEEE CS
      C2-set  19 Lek.pskmdpslklkeqekksletkklestfqpttediGtwvClas 63 
                 L+  p k++++l+l++ ++k+ ++ k +++ +   +d+G+++C+a 
  CCD24104.1 220 LFRpPFKIMSKLNLEGARMKARKKNKWIMINI---QDSGVFQCQAL 262
                 6888999**************99999998888...*********95 PP

>> Thioredox_DsbH  Protein of unknown function, DUF255
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.6e-05     0.078      29      81 ..     236     288 ..     230     314 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
  Thioredox_DsbH  29 alekakeedkpillsiGysachWChvmekesfedeevaallnesfvsvkvDre 81 
                     a  ka++++k i+++i  s    C+ ++++ ++ ++v +ll ++f+ ++   e
      CCD24104.1 236 ARMKARKKNKWIMINIQDSGVFQCQALNRDLWSSKDVKRLLKKNFIFLQYQYE 288
                     5579******************************************8876555 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.9e-05      0.18       1      50 [.     240     282 ..     240     349 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.9e-05
  Thioredoxin_2   1 akgngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepka 50 
                    a++++k +++ ++d++   C++l+++l++ +dv+       lk++f  ++
     CCD24104.1 240 ARKKNKWIMINIQDSGVFQCQALNRDLWSSKDVKRL-----LKKNF--IF 282
                    6799****************************9999.....77773..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.29s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3829.97
//
Query:       CCD24105.1  [L=395]
Description: hypothetical protein NDAI_0C04450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-47  162.2   0.4      2e-47  161.9   0.4    1.1  1  Peptidase_C13    Peptidase C13 family
  ------ inclusion threshold ------
       0.11   12.7   0.2        6.9    6.9   0.1    2.3  2  Alpha_adaptin_C  Alpha adaptin AP2, C-terminal domain


Domain annotation for each model (and alignments):
>> Peptidase_C13  Peptidase C13 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.9   0.4   2.3e-51     2e-47       1     236 [.      27     265 ..      27     287 .. 0.91

  Alignments for each domain:
  == domain 1  score: 161.9 bits;  conditional E-value: 2.3e-51
                    EEEEEEE---SGGGHHHHHHHHHHHHHHHCTT--GGGEEEEE---STT-TT-SSTT--BSSTT-.-B-STT.--ESBEGGG-SHHHHHHHHHT-TC CS
  Peptidase_C13   1 lyavlvAGsngydnyrhqadvchayqllkkkglkdenivvvmydDiaereenPlagkiinkpkg.edvykg.vkidYtgkkvtkenflavllGdks 94 
                    ++avlv+ s+ + nyrh a+v  +y+++k+ g++d +i+++  dD+a +++n ++g+++n+ ++  d+y   v++dY+g +vt enf+  l+   s
     CCD24105.1  27 NWAVLVSTSRFWFNYRHMANVLSMYRTVKRLGIPDSQIILMLSDDVACNSRNLFPGTVFNNKDHaIDLYGEnVEVDYRGYEVTVENFIRLLTDRWS 122
                    6***********************************************************998636999666********************8777 PP

                    .G.TT-------TTSEEEEEEES-EETTEEE-SSSSEEEHHHHHHHHHHHHHCT--SEEEEEEESTTGGGGTTTS-TTSSEEEEESS-TTS--BEE CS
  Peptidase_C13  95 .v.gsgkvlksgkeDnvfiyltdhGapgvlevpeeddleakdLaeaLkkmhakkkykklviyleaceSgsmfeellkdinvyaltAanadessfgt 188
                        + k l   ++ n+fiy+t hG++++l++ + ++++ +d+a+a+++mh+kk+y+++++++++c++  m ++ + + n++a+ +++ dess++ 
     CCD24105.1 123 eDqPKSKRLLTDENSNIFIYMTGHGGDDFLKFQDAEEIASEDIADAFEQMHEKKRYNEIFFMIDTCQANTMYSK-FYSPNILAIGSSRLDESSYSH 217
                    436555666677899***********************************************************.9******************** PP

                    CE.CTTTTCEEEEHHHHHHHHHHHH.S-TTT-BHHHHHHHHHHHHSSS- CS
  Peptidase_C13 189 ycedeedgtylgdlfsvawledsdd.edlsketlekqfelvkkkvakse 236
                      +d e+g    d f +  le  ++ e+ s+ tl++ f+    +  +s+
     CCD24105.1 218 -HSDVEIGVAVIDRFTYYTLEFLEKiEKNSTLTLKDLFDSYTLENVHSH 265
                    .559**********999999999885667789*****997665555555 PP

>> Alpha_adaptin_C  Alpha adaptin AP2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0    0.0086        77       1      91 [.     154     247 ..     154     254 .. 0.77
   2 ?    6.9   0.1   0.00077       6.9       4      66 ..     294     356 ..     292     364 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0086
  Alpha_adaptin_C   1 FleptelssedFfkrWkqlggapreaqkifklk..aaekeideetvrkvleGfrlavlenvd..pnpenivgagvlhtsesgkvgcLlrlepNk 90 
                      F +++e+ sed  +  +q+  ++++  +if +    +++++ ++++   +  ++ + l++    ++++  +g +v+   +   +  L ++e N 
       CCD24105.1 154 FQDAEEIASEDIADAFEQMH-EKKRYNEIFFMIdtCQANTMYSKFYSPNILAIGSSRLDESSysHHSDVEIGVAVIDRFTYYTLEFLEKIEKNS 246
                      7789999************5.6668888888764668899999999999999999988876511555566677778777777788899999986 PP

  Alpha_adaptin_C  91 q 91 
                      +
       CCD24105.1 247 T 247
                      5 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00077
  Alpha_adaptin_C   4 ptelssedFfkrWkqlggapreaqkifklkaaekeideetvrkvleGfrlavlenvdpnpeni 66 
                      p  +s +dF  +++  gg+++ ++++++l+ ++ + + e+ +k ++   l++++ v++n+++i
       CCD24105.1 294 PDDMSRKDFAGKYNYDGGNEKLSRNVLNLAIEKATEEREVSEKAISPTSLRIVNSVNQNARKI 356
                      568999***********************988888888999999*************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2918.40
//
Query:       CCD24106.1  [L=668]
Description: hypothetical protein NDAI_0C04460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-28   99.3   5.1    7.5e-28   97.7   0.2    2.5  2  ResIII      Type III restriction enzyme, res subunit
    6.7e-20   71.6   0.1    1.8e-19   70.2   0.1    1.8  1  DEAD        DEAD/DEAH box helicase
    1.5e-14   54.3   2.5    4.7e-13   49.5   0.2    3.3  2  Helicase_C  Helicase conserved C-terminal domain
    3.7e-09   36.6   0.8    3.7e-09   36.6   0.8    2.1  2  SWI2_SNF2   SWI2/SNF2 ATPase
    8.2e-06   26.1   0.4    0.00032   21.0   0.0    2.9  3  AAA_22      AAA domain
    3.7e-05   23.1   0.1    8.4e-05   22.0   0.1    1.5  1  DUF2075     Uncharacterized conserved protein (DUF2075)
  ------ inclusion threshold ------
      0.013   14.2   1.0      0.038   12.7   0.0    2.2  3  SNF2_N      SNF2 family N-terminal domain
      0.013   15.4   0.0      0.028   14.4   0.0    1.5  1  Flavi_DEAD  Flavivirus DEAD domain
      0.048   13.5   3.4       0.55   10.0   0.1    3.0  3  AAA_11      AAA domain
        3.6    8.5   6.6        5.5    7.9   5.6    1.8  2  TMA7        Translation machinery associated TMA7


Domain annotation for each model (and alignments):
>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.2   4.2e-31   7.5e-28       2     171 .]      25     186 ..      24     186 .. 0.88
   2 ?    3.1   0.8     0.048        87      73     117 ..     421     466 ..     399     489 .. 0.67

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 4.2e-31
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.. CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee..kflflvprkslleqtleefkkflseaykeigkkvsgdkkkake 98 
                 ++lr+yQ++ai++ +++++  +++r+ + +aTG GKT++  +li ++++ ++    k+l+lv+r++l  q+ +++kkf+++ +      ++  k+++  
  CCD24106.1  25 ITLRDYQQDAIDACVKSIQ-SGQRRVGVSLATGGGKTVIFSNLINQMMNLNPGTqfKTLILVHRRELALQATNTIKKFFPNLR----VQIEMGKYHS-- 116
                 689***************9.***************************998766677*************************85....3333334444.. PP

                 .....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHHHHT-......--SEEEEEESS-S- CS
      ResIII  99 kdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswreilekf......keavllglTATper 171
                  ++++++++v+++qs+ +++       +++++d +++iiiDEaH++ a +s+ +ile+f      ++  ++g++AT+er
  CCD24106.1 117 -EINDSDVVVASVQSIIRRL-------DKYKSDDINLIIIDEAHHAVA-NSYIKILEHFhsnnqsSKIPVVGFSATFER 186
                 .46899**************.......99*******************.******999954444344999******985 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.048
                 HGGGGTGG......GEEEESSS-B--.......-SEEEEEHHHHHHT CS
      ResIII  73 efkkflseayke..igkkvsgdkkkakekdstnkkilvttiqsldad 117
                 + k+  ++++ e  ++k ++++  ++ +++++ +++++tt++ +++ 
  CCD24106.1 421 KQKQREENKHLEelQEKQIQQQFSEK-MRNTDAWELTLTTYEDFKSF 466
                 33444444444454555555555555.9999**********998875 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.1     1e-22   1.8e-19       2     172 ..      29     188 ..      28     192 .. 0.84

  Alignments for each domain:
  == domain 1  score: 70.2 bits;  conditional E-value: 1e-22
                 HHHHHHHHHHH.....TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH CS
                 xxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil.....gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld 95 
                 d+Q+ ai++++     g++ v v+ +TG GKT +f+  + q + + +  t+ k+li++  reLa q  n++kkf+ +  lrv+  +g     + +s++ 
  CCD24106.1  29 DYQQDAIDACVksiqsGQRRVGVSLATGGGKTVIFSNLINQMM-NLNPGTQFKTLILVHRRELALQATNTIKKFFPN--LRVQIEMG-----KYHSEI- 118
                 7899999988877776668*****************9999887.5699999*************************7..78875555.....456778. PP

                 TTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD  96 ngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kd 172
                 n+ d+vv+  + +++ l++ k   ++++++++DEa+    +++ + +++ +++ +  +    ++  v+ +SAT++  d
  CCD24106.1 119 NDSDVVVASVQSIIRRLDKYK--SDDINLIIIDEAHHAVANSYIKILEHFHSNNQ--S----SKIPVVGFSATFErAD 188
                 88899*****99999887555..9*****************9*999999999982..2....3345********9444 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1      0.08   1.4e+02      15      33 ..      56      72 ..      47     148 .. 0.62
   2 !   49.5   0.2   2.6e-16   4.7e-13      10     110 ..     265     367 ..     256     368 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.08
                TTSEEEEEESSHHHHHHHH CS
  Helicase_C 15 eggkilifvntidrlekvk 33
                 ggk++if+n i+++   +
  CCD24106.1 56 GGGKTVIFSNLINQMM--N 72
                5777888888887552..1 PP

  == domain 2  score: 49.5 bits;  conditional E-value: 2.6e-16
                 H..HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHT CS
  Helicase_C  10 l..kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriG 105
                 l  k+e++ + +l+f   i ++e+  +++ +k+gi++ ++ ++++++ r+ei+++f++g++ vL+   +  +G dip+++ ++ + + r+ + ++q+iG
  CCD24106.1 265 LhqKKEHNLKSTLLFGVDIAHVESlYEIF-KKNGINARYVVSNTKNDLRDEIIREFREGKVSVLMNCGIFTEGTDIPNIDSIMLCRPTRSRSLLVQMIG 362
                 456788899999********998777888.7889***************************************************************** PP

                 TSSST CS
  Helicase_C 106 RtgRa 110
                 R  R 
  CCD24106.1 363 RGLRL 367
                 *9985 PP

>> SWI2_SNF2  SWI2/SNF2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.8     2e-12   3.7e-09       1     203 [.      30     230 ..      30     249 .. 0.82
   2 ?   -1.5   0.5      0.89   1.6e+03      78      95 ..     423     437 ..     398     475 .. 0.52

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 2e-12
   SWI2_SNF2   1 qQyravekavervkegdrkgGviWHtqGSGKsltmvflakklle.eelknpkvvvvtDRkdLdkQlsktfakageekpkqaesrkeLkellekesekii 98 
                 +Q  a+ + v+++++g+r+ Gv    +G GK++    l +++++ +  +++k ++++ R++L  Q ++t++k+  +  +q+e + + ++++  ++++++
  CCD24106.1  30 YQQDAIDACVKSIQSGQRRVGVSL-ATGGGKTVIFSNLINQMMNlNPGTQFKTLILVHRRELALQATNTIKKFFPNLRVQIEMG-KYHSEI--NDSDVV 124
                 6889*****************976.5688*****9999999999556699**********************988877777777.678888..5799** PP

   SWI2_SNF2  99 fttiqKfeeeekeklevlsereniivlvDEaHRsqygelakklrkalpnaa.....figFTGTPilkkdkktkevFgeyidkYtikeaveDgavvpilY 192
                 ++ +q + ++    l+++++++  ++++DEaH    +++ k l+++  n +     ++gF  T   +++k  ++v ++++ +  i e ++D+  ++ ++
  CCD24106.1 125 VASVQSIIRR----LDKYKSDDINLIIIDEAHHAVANSYIKILEHFHSNNQsskipVVGFSATFERADKKALSDVMDKIVYHRGIMEMIDDKWLCEGKF 219
                 ******9653....5566777767999**********88888887766654222337999999877777888999999999999999999999888888 PP

   SWI2_SNF2 193 esrlaklelke 203
                 +s  ++++l++
  CCD24106.1 220 TSVNIDVDLSK 230
                 77777766655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.89
   SWI2_SNF2  78 kqaesrkeLkellekese 95 
                 kq e++k+L+el    ++
  CCD24106.1 423 KQREENKHLEELQ---EK 437
                 2222233332222...12 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.8e-07   0.00032      14     114 ..      55     168 ..      54     182 .. 0.74
   2 ?   -0.4   0.0      0.71   1.3e+03      49      89 ..     304     368 ..     260     381 .. 0.67
   3 ?    0.8   0.1       0.3   5.3e+02      56      91 ..     410     448 ..     388     456 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.8e-07
      AAA_22  14 sGtGKTtllrrlleqldeeakaee.erpevv......fvtlpsstsskdllrellralglelkaerlsseell.ealeqalrarav.....ielliiDE 99 
                 +G GKT+   +l +q  + +  ++ +   ++      +  l++ ++ k+++ +l  +++ ++ +++ + ++++ + ++  +r+ ++     i l+iiDE
  CCD24106.1  55 TGGGKTVIFSNLINQMMNLNPGTQfK---TLilvhrrELALQATNTIKKFFPNLRVQIEMGKYHSEINDSDVVvASVQSIIRRLDKyksddINLIIIDE 150
                 799***********986543333342...2233577677888888***************99996666666666999999999999999********** PP

      AAA_22 100 aqh.lr.s.eealeeLrs 114
                 a+h +  s  ++le+++s
  CCD24106.1 151 AHHaVAnSyIKILEHFHS 168
                 ***553446666666633 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.71
      AAA_22  49 sstsskdllrellralglelka.......................erlsseell.ealeqalrar 89 
                 +s++  dl+ e+ r++ +++ +                       ++ +s+ ll +++ + lr +
  CCD24106.1 304 VSNTKNDLRDEIIREFREGKVSvlmncgiftegtdipnidsimlcRPTRSRSLLvQMIGRGLRLH 368
                 56678888888888888888878888888777777777777777744444444437776666655 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.3
      AAA_22  56 llrellralglelka..erlsseell.ealeqalrarav 91 
                  l+e+ ++++l++k   e++ +eel  ++++q+++++++
  CCD24106.1 410 DLHEIKKEMDLKQKQreENKHLEELQeKQIQQQFSEKMR 448
                 468888888888888888888899998999998888776 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   4.7e-08   8.4e-05      10     104 ..      55     158 ..      50     182 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.7e-08
     DUF2075  10 aGtGKtvvllnllael.edde.eertavylsvNhplvl.vlrealakke.........ekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDE 96 
                 +G GKtv+ +nl++++ +  +   + +++++v +++++    ++++  +         e  k+ +++++++ ++ ++++  ++ +k ++++++++i+DE
  CCD24106.1  55 TGGGKTVIFSNLINQMmN-LNpGTQFKTLILVHRRELAlQATNTIK--KffpnlrvqiEMGKYHSEINDSDVVVASVQSIIRRLDKYKSDDINLIIIDE 150
                 799*************52.331333333333333333213333333..224555555577888888888888888888779999999************ PP

     DUF2075  97 Ahrlltks 104
                 Ah +  +s
  CCD24106.1 151 AHHAVANS 158
                 ***98843 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.1e-05     0.038      65     192 ..      56     158 ..      27     179 .. 0.77
   2 ?   -3.3   0.0       1.5   2.7e+03     146     167 ..     253     274 ..     245     292 .. 0.71
   3 ?   -2.2   0.0       0.7   1.3e+03     271     296 ..     604     629 ..     601     640 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
                 TS--HHHHHHHHH...HHTTTS---.......S-EEEE--H.HHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  65 GLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPa.slldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittYdvlsr 162
                 G GKTv    li +    +            ++ tLi+v   +l+ q +n+i+++ ++ ++++ +++             +   +d dvv+ + + + r
  CCD24106.1  56 GGGKTVIFSNLINQMMNLNP---------GTQFKTLILVHRrELALQATNTIKKFFPNLRVQIEMGKY------------HSEINDSDVVVASVQSIIR 133
                 55777777777773333222.........2345599999888***************99875444444............45689*************9 PP

                 HT......TTS-S-S-SEEEES-GGG.T--T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
      SNF2_N 163 eaelqkkrsvlkqvewkrvvlDEght.lkns 192
                 +       ++ k+ +++ +++DE+h  + ns
  CCD24106.1 134 RL------DKYKSDDINLIIIDEAHHaVANS 158
                 99......9***************8525555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.5
                 ------EEEE-HHHHHHHT... CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 146 lladydvvittYdvlsreaelq 167
                 + +  +v+i tY  +++e++l+
  CCD24106.1 253 TEEVGNVIINTYLHQKKEHNLK 274
                 5566789999999999888754 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.7
                 --GGGT--S---EEEEEEEEE--HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 271 rakkdveknlPpkteeiiflklskve 296
                 ++k ++ek+l+++++   +l+ls+ +
  CCD24106.1 604 AIKVKLEKELAKCEKDYKYLDLSDID 629
                 678899****************9865 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.5e-05     0.028       9     133 ..      51     181 ..      43     189 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-05
                 EE--TTS-TT...TTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT....S-EEE-------------SEEEEEHHHHHHHHHHT------SEEE CS
  Flavi_DEAD   9 ldlhPGaGkt...rkvlpelvkeaierrlrtlvLaPtrvvlaemeealkg....levryktsavkeektgrelvdvmchatftkrllspvrkknyelii 100
                 + l  G Gkt     ++ ++++ +   + +tl+L+  r  +   ++ +k+    l+v+ +    ++e ++ ++v +      + r+l + ++ + +lii
  CCD24106.1  51 VSLATGGGKTvifSNLINQMMNLNPGTQFKTLILVHRRELALQATNTIKKffpnLRVQIEMGKYHSEINDSDVVVASV--QSIIRRLDKYKSDDINLII 147
                 5677799999333356777888888899**********9887776666651111566666666656666666554444..446799************* PP

                 EETTT--SHHH.HHHHHHHHHHHHTTS-EEEEEE CS
  Flavi_DEAD 101 mDeahflDPas.iaarGyletkaeegeaalillt 133
                 +Deah+   +s i    + ++++++ +  ++ ++
  CCD24106.1 148 IDEAHHAVANSyIKILEHFHSNNQSSKIPVVGFS 181
                 *****98766635555555555555555555555 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.32   5.8e+02       2      42 ..      27      71 ..      26     100 .. 0.67
   2 ?   10.0   0.1   0.00031      0.55     189     233 ..     114     158 ..      86     165 .. 0.74
   3 ?    1.8   0.2     0.096   1.7e+02     151     173 ..     420     442 ..     366     485 .. 0.60

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.32
      AAA_11  2 lndsqreaiksalsese.......itliqGPPGtgKTktivellsqll 42
                l d q++ai  ++++ +       ++l     G gKT     l++q++
  CCD24106.1 27 LRDYQQDAIDACVKSIQsgqrrvgVSLAT---GGGKTVIFSNLINQMM 71
                56778888877776666555554455555...55************94 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00031
      AAA_11 189 eeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEps 233
                  ++ ++++++v++ ++++ ++l +   +++ ++iIDEA  av  s
  CCD24106.1 114 YHSEINDSDVVVASVQSIIRRLDKYKSDDINLIIIDEAHHAVANS 158
                 38899**********9997665555555**********9999766 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.096
      AAA_11 151 klkkskekskskleqerrklkke 173
                  ++k++e++k  +e ++++++++
  CCD24106.1 420 LKQKQREENKHLEELQEKQIQQQ 442
                 11111111111111111111111 PP

>> TMA7  Translation machinery associated TMA7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0        10   1.8e+04      32      47 ..     186     201 ..     185     207 .. 0.73
   2 ?    7.9   5.6    0.0031       5.5      24      45 ..     417     438 ..     410     442 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 10
        TMA7  32 keeekalkelkakaag 47 
                 ++++kal ++++k+  
  CCD24106.1 186 RADKKALSDVMDKIVY 201
                 6788999998888755 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0031
        TMA7  24 Dlafkqkqkeeekalkelkaka 45 
                 ++  kqkq+ee+k l+el++k 
  CCD24106.1 417 EMDLKQKQREENKHLEELQEKQ 438
                 6889***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1856  (0.103519); expected 358.6 (0.02)
Passed bias filter:                      809  (0.0451224); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.74u 0.32s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 4346.34
//
Query:       CCD24107.1  [L=626]
Description: hypothetical protein NDAI_0C04470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-59  197.5   2.4    8.9e-59  196.7   2.4    1.4  1  STE       STE like transcription factor


Domain annotation for each model (and alignments):
>> STE  STE like transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   2.4     5e-63   8.9e-59       1     110 []      59     168 ..      59     168 .. 0.99

  Alignments for each domain:
  == domain 1  score: 196.7 bits;  conditional E-value: 5e-63
         STE   1 qvirrykleeeegfiscvlwknlfyitgtdivkilvykleafGrkitdkkkfeeGifsdlrnlkigvdavleepksefldllyknkclrtqkkqkvfyw 99 
                 q+irry+l+ ++gfiscv+w+nl+yitgtdivki++y++++fGr i++kkkfeeGifsdlrnlk+gvda+le+pksefl +l+kn+cl+tqkkqkvf+w
  CCD24107.1  59 QIIRRYYLDGNQGFISCVFWDNLYYITGTDIVKICMYRMQKFGRIIVQKKKFEEGIFSDLRNLKCGVDATLEQPKSEFLAFLFKNMCLKTQKKQKVFFW 157
                 68************************************************************************************************* PP

         STE 100 fsvphdklfld 110
                 fsvphdk+f+d
  CCD24107.1 158 FSVPHDKIFAD 168
                 *********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       928  (0.0517597); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4532.81
//
Query:       CCD24108.1  [L=727]
Description: hypothetical protein NDAI_0C04480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-86  289.8   1.7    4.5e-86  289.1   1.7    1.4  1  Tcf25      Transcriptional repressor TCF25
  ------ inclusion threshold ------
       0.13   11.6   0.0       0.27   10.6   0.0    1.4  1  TraE       TraE protein
       0.64   10.2   8.0          2    8.6   8.0    1.8  1  ARD        ARD/ARD' family
        6.8    6.3  13.8        3.2    7.4   1.1    2.5  2  GET2       GET complex subunit GET2


Domain annotation for each model (and alignments):
>> Tcf25  Transcriptional repressor TCF25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.1   1.7   9.9e-90   4.5e-86       1     350 []     331     667 ..     331     667 .. 0.89

  Alignments for each domain:
  == domain 1  score: 289.1 bits;  conditional E-value: 9.9e-90
       Tcf25   1 Fkfe...kskeykeaqnlFlqlvdshDpealinl.lkkyPYHvdtLLqlsevyresedlevAndlieraLfalerafhisFhenllnltsgeirldyel 95 
                 Fkfe   ++ ++k++++++l++v ++D+ealinl  +kyPYHv+ LLq++ ++  ++d++++n l++raLf+++ra+ +s      n+   ++ l+y +
  CCD24108.1 331 FKFEplnDDINRKAITEFYLSVVLHPDHEALINLiASKYPYHVPGLLQVALITIRQGDKSNTNGLLQRALFVFDRALRSSI-----NFDGTSCQLPYIY 424
                 67777778899***********************889****************7777*********************977.....777778******* PP

       Tcf25  96 veNRalflalfrhilslerrgctrTaleiaKlllsldpaeDplgillfiDflalksneyefLiklseefeiqrvqsvllfelselpnfafslaLalylk 194
                 + NR+++la+fr+il l +rg++ Ta e++K+l+sl+p eDplg+++f+D+++l +n+y++Li+ls++   +       ++  ++++f++ ++L+++  
  CCD24108.1 425 FYNRQFYLAIFRYILALAQRGAVATASEWCKVLWSLSPLEDPLGCRYFMDHYLLLNNDYQYLIELSKSPLMNT------YKQWNTLGFSLGVVLSYL-- 515
                 ********************************************************************55555......677889************.. PP

       Tcf25 195 enkkklslsekakeaLqrAllrfPsvlqlLleklnvkttvkvtseslfkdssessfseeeelellqklYlersnilwkeeevitwLesevaelhellkd 293
                     +l++++ a+++L ++++++P  l +L+++  + +++ ++         +++ se+++  l +k+Y++r+ ilwk++e++++L+se+   +++l+d
  CCD24108.1 516 ----HLNEKDLARKELIKCFKNHPLKLAQLFQEKLLGDPSLIA---------NMDISEQKADILESKAYMARFPILWKNAEDVSFLHSEL---TKILHD 598
                 ....8999*******************************8886.........78888999999999************************...888888 PP

       Tcf25 294 ............kkryseekpaak........eahsk......ldiniyrhvivselkslnallPdeimeknrsvlefDplpP 350
                             +                   +   +      + in++r++i+se++s++a++P++i++ + +v+efD+lpP
  CCD24108.1 599 hktgnltveldnN----------AeedetediT---SpffiegIPINLLRFAILSEESSVMAAIPPSIWS-DYEVFEFDVLPP 667
                 6667666554331..........0222232220...134445699************************8.***********9 PP

>> TraE  TraE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   6.1e-05      0.27      87     136 ..     583     632 ..     575     636 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.1e-05
        TraE  87 etvdyqfneLlklvapeaygelkkqlaeeaerikksnvssvFypesievd 136
                 e+v++ + eL k+ ++ + g l  +l++ ae+ ++++++s F++e i ++
  CCD24108.1 583 EDVSFLHSELTKILHDHKTGNLTVELDNNAEEDETEDITSPFFIEGIPIN 632
                 899*****************************************988765 PP

>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.0   0.00044         2      10      92 ..      58     139 ..      44     157 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00044
         ARD  10 egderlphhtspkekaeelelaklgvlrwkldaddeeeaeeeekilktkeeekkdidvevlkestpnfdeklekFfeEhlhed 92 
                 ++d  ++++ +   + +e ++ ++g ++ kl+++ +++++++++   +k +++ ++      e+ ++fd++l++F +E   ++
  CCD24108.1  58 TSDIAEKEQIDNGVSETEAHEGEDGDKMVKLPTKSQKKKNKKKNKTSKKTTNIDTV-TANEDENDEEFDKLLQQFQRENIRKN 139
                 34555666666677777778888888888999987777777766666666666555.4556677889***********98876 PP

>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.1   0.00071       3.2     109     175 ..      13      74 ..       2      80 .. 0.73
   2 ?    2.3   7.6     0.024   1.1e+02      72     126 ..      83     142 ..      64     156 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00071
        GET2 109 dqllkqllqqqqqgnsensqdaesstPdlfsqllkmmkqgeggsakseeetssspeeaeyqqqlley 175
                 d+ll+++l+++    +++++++++stP++  +++  m+++e++ ++++++ts   e++++++ ++e 
  CCD24108.1  13 DELLESILRSN----NSSASTSKKSTPKPHVNIFALMNDNEDD-DEGSDNTSDIAEKEQIDNGVSET 74 
                 67999999994....3444556789999999999999999998.66677777777777777776665 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.024
        GET2  72 dp..eiediseiavk...pkktasskkksplseesepeapqldqllkqllqqqqqgnsen 126
                 d+  +++  s+   +   +k+++++++ ++++++++++++++d+ll+q+ +++  +n  n
  CCD24108.1  83 DKmvKLPTKSQKKKNkkkNKTSKKTTNIDTVTANEDENDEEFDKLLQQFQRENIRKNTAN 142
                 2223333333333330003444444445555666677777********999977766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1882  (0.10497); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 4777.06
//
Query:       CCD24109.1  [L=334]
Description: hypothetical protein NDAI_0C04490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-24   86.5   0.1    1.5e-24   86.5   0.1    2.4  3  Ipi1_N    Rix1 complex component involved in 60S ribosome mat
  ------ inclusion threshold ------
      0.026   14.0   0.2      0.035   13.6   0.2    1.3  1  UCH       Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> Ipi1_N  Rix1 complex component involved in 60S ribosome maturation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.4       1.1   9.7e+03      76      85 ..      14      23 ..       2      48 .. 0.51
   2 !   86.5   0.1   1.7e-28   1.5e-24       2     101 ..     125     217 ..     124     218 .. 0.82
   3 ?   -1.1   0.0      0.32   2.9e+03      44      63 ..     295     314 ..     276     332 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
      Ipi1_N 76 atsssssskk 85
                  + + +++k
  CCD24109.1 14 FLKQKLKVGK 23
                2233333333 PP

  == domain 2  score: 86.5 bits;  conditional E-value: 1.7e-28
      Ipi1_N   2 elaphaeslllyirsAmTHispdIredslkfLdllLevapeelvssawvktLnnflallgwskeksskgstsakatsssssskktskksrlkvLsvlak 100
                  l++h+++++lyi++AmTHi ++I++ds+kfL++lLe ++ee++++awvk++n+++ +lgw       g++ +  + +++s+k+ ++ + + +L++l++
  CCD24109.1 125 VLRLHCKVFVLYINMAMTHIITQIQNDSTKFLQCLLEDCQEEIIRQAWVKMMNGLFCVLGWG----AIGNNIS--AGVAQSKKR-NAPTLKIHLDTLYE 216
                 699**********************************************************3....3333332..234444444.77777778888876 PP

      Ipi1_N 101 f 101
                 +
  CCD24109.1 217 L 217
                 5 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.32
      Ipi1_N  44 lvssawvktLnnflallgws 63 
                 + +++++ktL++ l+ll ++
  CCD24109.1 295 IFEEQYLKTLEKELDLLVKD 314
                 44556999999999999874 PP

>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   3.9e-06     0.035      50     118 ..      65     228 ..       7     258 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.9e-06
                 TTS.TTHHHHHHHHHHHHHHSH-CCEE--.......................................HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  50 plgkkgelakalkdlfkellkskskavsP.......................................kklkktlsklaksfsgykqqDaqEflaflLd 109
                 +++ ++e +  +++ + +++  +sk +sP                                       k ++  ++    ++ +  q+D++ fl+ lL+
  CCD24109.1  65 NSTVRKETLGLFQKSLPKII--NSKLISPlvtqsiplicddsrdvreglislikeigklepqvlrlhcKVFVLYINMAMTHIITQIQNDSTKFLQCLLE 161
                 22222222222222222222..35556666666666777777777777777777777777777777779999999999999999*************** PP

                 HHHHHHCC..........................................................H CS
                 xxxxxxxx..........................................................x RF
         UCH 110 qlhedlnr..........................................................e 118
                 +++e++ r                                                          +
  CCD24109.1 162 DCQEEIIRqawvkmmnglfcvlgwgaignnisagvaqskkrnaptlkihldtlyeliksgcleiedN 228
                 ******9977777777777777777777766666666665555555555555555555555555542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1084  (0.0604607); expected 358.6 (0.02)
Passed bias filter:                      583  (0.0325172); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2494.17
//
Query:       CCD24110.1  [L=81]
Description: hypothetical protein NDAI_0C04500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-11   43.1   0.0    3.7e-11   42.9   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   2.1e-15   3.7e-11     221     279 ..      12      73 ..       7      80 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.9 bits;  conditional E-value: 2.1e-15
                   EEEEEECE--STTS--HHHH...HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCC CS
  Oxidored_FMN 221 vgyRlSpedvvekgldfaet...aqkivllkelekrlkdgkklalvhaaeprkrgagsvrte 279
                    g+RlSp++ +++++++a+    aq++++l+elekr+k+gk+la+vh++epr+++++ ++ e
    CCD24110.1  12 FGIRLSPYGTFGTMSGGADPtllAQYAYVLGELEKRAKAGKRLAFVHLVEPRVTNPFMTEGE 73 
                   689****************99************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:01.05
# Mc/sec: 232.72
//
Query:       CCD24111.1  [L=1504]
Description: hypothetical protein NDAI_0C04510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-67  226.1   0.2      1e-66  225.1   0.2    1.5  1  SNF2_N      SNF2 family N-terminal domain
    1.5e-18   67.1   0.1      1e-17   64.4   0.0    2.6  3  Helicase_C  Helicase conserved C-terminal domain
    4.8e-18   65.2   5.8    4.8e-18   65.2   5.8    2.1  1  HSA         HSA
    2.8e-11   43.7   0.0    2.8e-11   43.7   0.0    3.8  4  ResIII      Type III restriction enzyme, res subunit
    1.5e-06   28.1   0.0    1.2e-05   25.1   0.0    2.6  3  DEAD        DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.1   0.2   2.8e-70     1e-66      49     349 ..     705     995 ..     695     996 .. 0.87

  Alignments for each domain:
  == domain 1  score: 225.1 bits;  conditional E-value: 2.8e-70
                 HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  49 aeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkll 147
                 a++++++ +GiLaDemGLGKT+q+++l++   +          ++++ gp+LivvP+s+l +We e++r++++ ++  ++++ q++++k   +   +  
  CCD24111.1 705 ASLYNNNTNGILADEMGLGKTIQTISLLA---YLAC-------EKQIWGPHLIVVPTSVLLNWEMEFKRFAPGLKVLTYYGSPQQRKEK---RKGWNKP 790
                 5678999**********************...4332.......346789*************************998888888764444...4566777 PP

                 ----EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--.HH...... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx...... RF
      SNF2_N 148 adydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfge.kq...... 239
                  +++v+i++Y+ + +++      + +k+++w+++vlDE+h++kn  s   +a+++++t++r++ltGTP+qn+l++l++Ll fL+++   + k+      
  CCD24111.1 791 DAFHVCIVSYQLVVQDQ------HSFKRKRWEYMVLDEAHNIKNFRSTRWQALLNFNTRRRLLLTGTPLQNNLAELWSLLYFLMPQTIINgKKvsgfad 883
                 899***********888......9************************************************************998666444566666 PP

                 ..HHHHHTHHHHH............HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHH CS
                 ..xxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 240 ..tfdkllqrpie............aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalk 324
                    f++++ rp+             ++++k +++L+q+l++++lrr k+dvek++P k e+i++++lsk +r +Y + ++ + +ka            +
  CCD24111.1 884 ldAFQQWFGRPVDklietgggyaqdEETKKTVAKLHQVLRPYLLRRLKADVEKQMPAKYEHIVYCRLSKRQRFLYDDFMSRSKTKA------------T 970
                 669*********************9999************************************************4444333333............3 PP

                 HHH-HHH-HHHHHHHHHHHHH---X CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 325 ssskskekilelllelrqacnhpql 349
                  +s + + i+++l++lr++cnhp+l
  CCD24111.1 971 LASGNFMSIVNCLMQLRKVCNHPDL 995
                 333223559**************98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.6   5.7e+03      11      57 ..     737     782 ..     728     799 .. 0.63
   2 ?   -3.7   0.1       4.3   1.5e+04      34      62 ..    1063    1090 ..    1039    1097 .. 0.56
   3 !   64.4   0.0   2.9e-21     1e-17       2     111 .]    1242    1351 ..    1238    1351 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.6
                 HHTTTTSEEEEEESSHHHHHH...HHHHHHHT..TSTEEEESTTSTHHHHHH CS
  Helicase_C  11 kleeeggkilifvntidrlek...vklllekk..gikvavlhgelpqneree 57 
                  ++++ g  li+v+t   l+    +k    ++  g+kv++++g+   ++r+e
  CCD24111.1 737 CEKQIWGPHLIVVPTSVLLNWemeFK----RFapGLKVLTYYGS--PQQRKE 782
                 66777778888888888665431223....3355999*999994..334433 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.3
                  HHHHHTTSTEEEESTTSTHHHHHHHHHHH CS
  Helicase_C   34 lllekkgikvavlhgelpqnereeileqf 62  
                   + +++  ++ +l  e+++ + e ++ +f
  CCD24111.1 1063 CI-KSFVKEIDILKEEITKAKIENTIMNF 1090
                  33.23345566677777777777766666 PP

  == domain 3  score: 64.4 bits;  conditional E-value: 2.9e-21
                  HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSS CS
  Helicase_C    2 kleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprn 96  
                  kl++ll+ l  + +g+++lif++ ++ l+ ++ +l+ +g+ + +l+g ++ ++r+   e+fn + +++ ++++++ ++ Gi+++++++Vi++d ++n
  CCD24111.1 1242 KLAILLQNL--KDNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKVEDRQILTERFNtDSKVTvFILSSRSGGLGINLTGADTVIFYDSDWN 1336
                  555666665..8**************998888998999************************8788888**************************** PP

                  HHHHHHHHTTSSSTT CS
  Helicase_C   97 vtsyiqriGRtgRag 111 
                  ++  +q  +R++R+g
  CCD24111.1 1337 PAMDKQCQDRCHRIG 1351
                  *************97 PP

>> HSA  HSA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   5.8   1.3e-21   4.8e-18       5      70 ..     363     428 ..     360     429 .. 0.95

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 1.3e-21
                 XXXXX--HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--XXXXXXXXXXXXXXXXXXX. CS
         HSA   5 errqkthhdylLeeilwhakdfkeerkskrakakklaravakyhnniekeeqkriereekerlkal 70 
                 e++ + h+dyl++++++++k f+ +r++++a+akk+++++ +++++i+++e+++ ++ee++r+ ++
  CCD24111.1 363 EQNLHVHQDYLINQGIYMSKLFHSSRRARMARAKKVSQMIDSHFKHIAGAEERKLKEEERNRKLLA 428
                 6779**********************************************************9876 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.84     3e+03      56     156 ..      38     142 ..      29     159 .. 0.51
   2 ?   -4.8   5.9         5   1.8e+04      67     133 ..     176     239 ..     136     250 .. 0.60
   3 ?   -2.2   0.5         1   3.6e+03      84     118 ..     483     521 ..     399     580 .. 0.58
   4 !   43.7   0.0   7.7e-15   2.8e-11       3     169 ..     692     852 ..     690     854 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.84
                 -EEEEESSHHHHHHHHHHGGGGTGG..........GEEEESSS-B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T CS
      ResIII  56 kflflvprkslleqtleefkkflseayke......igkkvsgdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk 148
                 kf+ lv     ++   e +k+f++++  +      +gk+ +g +++   + +t k+  +   q  d  ++++ + +++ + + + + i DE   l + +
  CCD24111.1  38 KFISLVEFDPSYSNESESYKEFIDKNGLAleiteiNGKIADGPNNID-GNTQTGKNTKIRRRQLRDTTLSKDPKLTTTSQVHLSAINILDEIEPLVQ-E 134
                 66666666666666666676776666655666665445555555555.3334444444444443333333333344444444444444444444444.4 PP

                 TTHHHHHT CS
      ResIII 149 swreilek 156
                  +r++ ++
  CCD24111.1 135 RYRQLENS 142
                 44444444 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 5
                 HHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH........HHHTTT- CS
      ResIII  67 leqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrf 133
                 ++++++ ++k+++e ++++ k++++   ++ +  ++++k   t+iq + ++++  ++e+e+ ++d++
  CCD24111.1 176 VSKAKRSYRKMKKESNDNTHKDINSPLTTE-QTPKQSRKPSKTSIQIIENENN--QQEDEDSESDSY 239
                 456666666666666655555554444444.3444444444445555544442..344444444444 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1
                 ....GEEEESSS-B--........-SEEEEEHHHHHHTH CS
      ResIII  84 e...igkkvsgdkkka.kekdstnkkilvttiqsldads 118
                 +   +  ++s+d+++  +++d+++ + ++++ +s++++s
  CCD24111.1 483 QpadEDLSISSDNNDTsSKSDTDSDDDMLSSSSSAHSAS 521
                 121112223333333344555555555555555555555 PP

  == domain 4  score: 43.7 bits;  conditional E-value: 7.7e-15
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG............GEEEESSS CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseayke........igkkvsgd 92 
                 +lr yQ++ ++ l+ +l  +++++g+++ + G GKT+  ++l ++l+ ++++    l++vp+  +l  ++ efk+f++  +           ++k +g 
  CCD24111.1 692 TLRVYQKQGLNWLA-SLY-NNNTNGILADEMGLGKTIQTISLLAYLACEKQIWgPHLIVVPTS-VLLNWEMEFKRFAPGLKVLtyygspqqRKEKRKGW 787
                 58999999987665.666.9*******************999999988766656888888875.6667**********975436555443222222232 PP

                 -B--.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...TTTHHHHHT---SEEEEEESS- CS
      ResIII  93 kkkakekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..kswreilekfkeavllglTATp 169
                       ++ +  +++++++q + +d+       ++++r+r ++++ DEaH+++    + w+++l+  +   +l lT+Tp
  CCD24111.1 788 ------NKPDAFHVCIVSYQLVVQDQ-------HSFKRKRWEYMVLDEAHNIKNFrsTRWQALLNF-NTRRRLLLTGTP 852
                 ......445699*********99999.......9*****************998754699997666.7799999****9 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.94   3.4e+03     119     141 ..     119     139 ..      87     156 .. 0.65
   2 !   25.1   0.0   3.4e-09   1.2e-05      13     146 ..     710     838 ..     695     859 .. 0.75
   3 ?   -3.4   0.0       1.9   6.9e+03     102     146 ..    1015    1061 ..    1006    1071 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.94
                 CTTEEEEEEETHHHHHHTTTHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 119 lsqvrflVlDEadrlldqgfsdf 141
                 ls   + +lDE+  l ++ +++ 
  CCD24111.1 119 LS--AINILDEIEPLVQERYRQL 139
                 22..3469999999999855543 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 3.4e-09
                 TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrlddl 111
                 ++ + ++a e G GKT   +  +     e  ++     liv+Pt  L +    ++k+f     l+vl  +g+ ++r++++k  n++d +       + +
  CCD24111.1 710 NNTNGILADEMGLGKTIQTISLLAYLACE--KQIWGPHLIVVPTSVLLN-WEMEFKRFAPG--LKVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQLV 803
                 55677899999*****9865555555544..5555678999****9986.67789999995..89*999**9999999999889976666666666655 PP

                 H.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHH CS
                 x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 112 l.stgklnlsqvrflVlDEadrlldqgfsdfinril 146
                 + ++++++ ++ +++VlDEa+++ +  +s  ++++l
  CCD24111.1 804 VqDQHSFKRKRWEYMVLDEAHNIKNF-RSTRWQALL 838
                 53577799**************9987.555555555 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.9
                  EEEHHHHHH.HH...HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHH CS
                  xxxxxxxxx.xx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  102 vgtpgrldd.ll...stgklnlsqvrflVlDEadrlldqgfsdfinril 146 
                  ++t  ++++ +l   ++ +++l++++ lV+ E d+ l +  sd i++ l
  CCD24111.1 1015 YTTMNKFMHkMLassDDSRVDLKNLN-LVFSENDNNLTSYHSDSISK-L 1061
                  56666666645566545667788885.78999999999988888877.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1759  (0.0981092); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.07u 0.28s 00:00:01.35 Elapsed: 00:00:00.46
# Mc/sec: 9751.04
//
Query:       CCD24112.1  [L=336]
Description: hypothetical protein NDAI_0C04520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-12   46.7   0.0    6.7e-12   45.5   0.0    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
    1.2e-05   25.3   0.0    5.9e-05   23.0   0.0    1.9  2  RsgA_GTPase   RsgA GTPase
     0.0018   17.7   0.0     0.0039   16.6   0.0    1.6  1  SRPRB         Signal recognition particle receptor beta subun
  ------ inclusion threshold ------
      0.016   14.8   0.7      0.045   13.3   0.0    2.2  2  GTP_EFTU      Elongation factor Tu GTP binding domain
      0.062   12.8   0.1       0.15   11.6   0.1    1.6  1  FeoB_N        Ferrous iron transport protein B
      0.099   12.3   0.3       0.32   10.6   0.0    1.7  2  NRIP1_repr_1  Nuclear receptor-interacting protein 1 repressi


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   2.2e-15   6.7e-12       1     106 [.     149     260 ..     149     268 .. 0.74

  Alignments for each domain:
  == domain 1  score: 45.5 bits;  conditional E-value: 2.2e-15
                 EEEEEESTTSSHHHHHHHHHT.....S...TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS.HHHHHH.HHHHHHHHHHC.TSEEEEEEETTTT CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg.....e...kaivsdkpgtTrdinegrvklkgkeielvDtpGlie.gaseek.glgkaflalee.adlillvvdasee 88 
                 ev+++ r+N+GKStL+n lt      +    a++s+ +g T++ n +++    ++++lvD pG +  g++ ++  ++ ++l++++      l+v   ++
  CCD24112.1 149 EVIFISRTNAGKSTLLNNLTTsfnqnRldvSAKMSKSAGFTKTLNCFNIG---NRFRLVDSPG-YGfGSDIKQgIITMDYLKNRKeLMRSYLLVP-GHK 242
                 588999**************644444255578****************96...79********.8776666666788889988876333444444.335 PP

                 CSHHHHHHHHHHHHHTTS CS
    MMR_HSR1  89 klkpldeeleelleeakk 106
                 ++++ld ++ +++  +++
  CCD24112.1 243 GFNELDLQMVDFMVANGI 260
                 688888777777655555 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     2e-08   5.9e-05     102     160 ..     150     208 ..     142     211 .. 0.94
   2 ?   -0.7   0.0      0.39   1.2e+03      43      71 ..     256     284 ..     244     304 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 2e-08
                  EEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-S CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPG 160
                  ++++  + +GKStL+n+l+ + +++  +vs+k+++    T++ + +++ +   l+D+PG
   CCD24112.1 150 VIFISRTNAGKSTLLNNLTTSFNQNRLDVSAKMSKSAGFTKTLNCFNIGNRFRLVDSPG 208
                  57888999**************************************************9 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.39
                  HHTT-EEEEEEE-GGG--HHHHHHHHHHH CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeeeeleelkee 71 
                   ++gi+  ++++ +D +++ e+++++ ++
   CCD24112.1 256 VANGISFEVIFTQMDRVKDIETFRKMLDA 284
                  56677777788888877777755555443 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.3e-06    0.0039       3      59 ..     147     209 ..     145     233 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-06
                 --EEEEE-STTSSHHHHHHHHHHS.....S---B---SS-EEETTG....GGTT-SEEEETT- CS
       SRPRB   3 kpavllvGlsdsGKTslftrLttd.....svkktvtSqessaalkv.ksekgskltliDfPGh 59 
                  p v+++  +++GK +l++ Ltt         ++ +S  + +++ +   + g++++l+D PG 
  CCD24112.1 147 LPEVIFISRTNAGKSTLLNNLTTSfnqnrLDVSAKMSKSAGFTKTLnCFNIGNRFRLVDSPGY 209
                 589********************98766555567788888888888334789**********6 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.5   4.4e+03      29      58 ..      25      55 ..      16      67 .. 0.49
   2 ?   13.3   0.0   1.5e-05     0.045       4      96 ..     148     224 ..     145     306 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.5
                SSCHHHHHH.HHHSTHCHSHHHHHHTSCSSC CS
    GTP_EFTU 29 aiskkgeka.eeervlDtlkeErergiTiks 58
                +is+ + k+ +++   D+  +E ++ i  k 
  CCD24112.1 25 IISQTKVKDtKNAGESDNILNETKKVIASKR 55
                3333222222112235666666666665544 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.5e-05
                 EEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SE CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDg 96 
                   +++i+ +++GK+TL+ +L+++ ++ +             ++k  +  g+T + +  ++       ++ l+D+PG   F +++ +g+ ++D+
  CCD24112.1 148 PEVIFISRTNAGKSTLLNNLTTSFNQNRL--D--------VSAKMSKSAGFTKTLNCFNIG-----NRFRLVDSPGY-GFGSDIKQGIITMDY 224
                 578999***************87777444..2........235677888999888888888.....88889999996.588888888887776 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1     5e-05      0.15       3      77 ..     150     228 ..     148     236 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5e-05
                 EEEEESTTSSHHHHHHHHHTTSEE....EEESTTSSSEEEEEEEEE.....TTEEEEEEE----SSSSSSSHHHHHHHHHHHCT CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqk....vgNwpGvtvekkegklkl.....kgkeveivDlPGiYslsayseeekvardfllee 77 
                 v+++   n+Gk+tl+n+lt + ++    v+      + k+ g +k+      g+++++vD PG Y + +  ++  ++ d+l ++
  CCD24112.1 150 VIFISRTNAGKSTLLNNLTTSFNQnrldVSAK----MSKSAGFTKTlncfnIGNRFRLVDSPG-YGFGSDIKQGIITMDYLKNR 228
                 6778889***********98643301113322....222222222222221568899999998.77777777777777777665 PP

>> NRIP1_repr_1  Nuclear receptor-interacting protein 1 repression 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00011      0.32     111     170 ..       8      64 ..       4      91 .. 0.72
   2 ?   -1.1   0.0      0.39   1.2e+03     102     120 ..     158     177 ..     153     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
  NRIP1_repr_1 111 LLqsFssRLqsvalsqqirqslkeqdlslssdksaeadeedlrcygtAssrLktLlkksk 170
                   L  s ssRL +v+l+++i    k +d++    +s ++ +e+ +    As r  +++ k+ 
    CCD24112.1   8 LFASSSSRLDNVSLAKRIISQTKVKDTKNAG-ESDNILNETKK--VIASKRTTKVVTKNN 64 
                   77899**************999999955444.33333333333..356777666666665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.39
  NRIP1_repr_1 102 kqestLLAsLLqsFs.sRLq 120
                    + stLL  L  sF   RL 
    CCD24112.1 158 AGKSTLLNNLTTSFNqNRLD 177
                   47899999999999624554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2407.18
//
Query:       CCD24113.1  [L=261]
Description: hypothetical protein NDAI_0C04530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-30  104.5   0.8    2.5e-30  104.5   0.8    2.0  2  Ribosomal_S15  Ribosomal protein S15
  ------ inclusion threshold ------
      0.014   15.7   1.4        3.1    8.1   0.2    2.2  2  HAD_SAK_2      HAD domain in Swiss Army Knife RNA repair prot
      0.066   11.7   1.5      0.079   11.4   1.5    1.0  1  FHIPEP         FHIPEP family
        1.1    9.3   5.1       0.42   10.6   1.3    2.3  3  UPF0542        Uncharacterised protein family UPF0542
        3.4    8.0   7.2        1.6    9.0   1.7    2.6  2  Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus


Domain annotation for each model (and alignments):
>> Ribosomal_S15  Ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.83     3e+03      51      67 ..     127     143 ..     120     147 .. 0.75
   2 !  104.5   0.8   6.8e-34   2.5e-30       5      80 ..     158     233 ..     154     234 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.83
                    HHHHHHHHHHHHHHHH- CS
  Ribosomal_S15  51 klvskRrkllkYLkrkd 67 
                    +l++kR+ +l+ L  ++
     CCD24113.1 127 ELEEKRQVILRILSMRN 143
                    57788888888887665 PP

  == domain 2  score: 104.5 bits;  conditional E-value: 6.8e-34
                    HHHHSSSTT-TSSHHHHHHHHHHHHHHHHHHHHCTTT-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCTS CS
  Ribosomal_S15   5 ikefqrhekDtGspevqiallterInnltehlkenkkDkhsrrgLlklvskRrkllkYLkrkdverYkklieklgl 80 
                     +efqr ++DtGs+evq+a++t rI n+  h++e++kD+++ r+L++lv++R+++l+YLkr++ erY ++i+klgl
     CCD24113.1 158 REEFQRFPGDTGSSEVQAACMTVRILNMAHHIQEHRKDYSNTRHLRMLVQQRQSILRYLKRNNAERYYWVIQKLGL 233
                    79*************************************************************************8 PP

>> HAD_SAK_2  HAD domain in Swiss Army Knife RNA repair proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.2   0.00085       3.1      26     102 ..      51     142 ..      36     152 .. 0.81
   2 ?    6.8   0.1    0.0022       8.1      71     110 ..     181     228 ..     158     249 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00085
   HAD_SAK_2  26 a.............ldpeaverlkriveatgakiVlsstWrrredeelkallkaagrpriigvtpdlpeeeseeekk..sRaqeilewlrrh 102
                 +             + +++v  ++ri ++ +  +Vlss    +e e+  a+++   +++++++  + ++  se+ek+  ++ q il+ l+ +
  CCD24113.1  51 QatiknslervdpvFGKKNVPFIARISAELKEPLVLSSGYNVEEVEKFLAAIETTKKKQLADRGINVDMIVSENEKEleEKRQVILRILSMR 142
                 134556777888889999**************************999999999999999999999999999999888999999999999876 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0022
   HAD_SAK_2  71 riigvtpdlpeeeseeekk.......sRaqeilewlrrh.eeveawva 110
                 ri+ +  +++e++++ +++       +  q il++l+r+ +e   wv+
  CCD24113.1 181 RILNMAHHIQEHRKDYSNTrhlrmlvQQRQSILRYLKRNnAERYYWVI 228
                 555555666655555544477888889999*********544445554 PP

>> FHIPEP  FHIPEP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.5   2.2e-05     0.079     297     465 ..      35     212 ..       9     233 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.2e-05
                 XXXXX...........XXXXXXXXXXXXXX..................TS-EEEEE-GGGH..HHHHHT.......HHHHHHHHHHHHHSS---SEEEE CS
      FHIPEP 297 kkkke....ekeeekeeeeeeaeeeeeeee.........eeveellk.vdplelelgyeli..plvdeeqggeLlerikalrkqlaeelGlvvpeirir 379
                 +   +    +++++k+ee++++ ++    +         +   + +  +  ++ el + l+  +  + e+ +++l+ i++ +k+  ++ G+ v  i  +
  CCD24113.1  35 A---KflkaQRRRQKNEEKQATIKN----SlervdpvfgK---KNVPfIARISAELKEPLVlsSGYNVEEVEKFLAAIETTKKKQLADRGINVDMIVSE 123
                 1...122111111111122211122....13234555543...333334555555555544226677778899************************** PP

                 E-TT--TT.EEEEEETTEEEEEEE--TTSEEET..........--EEEEETTE...EEEEE-HHHHHHHHTTT--EEEHHHHHHHHHHHH CS
      FHIPEP 380 dnlelkpn.eyrikikgvevaegelkpdkllalnpgevee...legeetkepafglpavwieeeqreeaeaagytvvdpssvlathlsev 465
                 ++ el+++ +  ++i  ++ a+ +  ++  l l  +e ++     + + + +a  +++  ++ +++ + ++++y+ +++ ++l+++ +++
  CCD24113.1 124 NEKELEEKrQVILRILSMRNANNKSSIKLALKLAREEFQRfpgD-TGSSEVQAACMTVRILNMAHHIQEHRKDYSNTRHLRMLVQQRQSI 212
                 *****986155567888887777777776666644444443321.222223334445555555666666666666666666666655555 PP

>> UPF0542  Uncharacterised protein family UPF0542
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.3   0.00012      0.42      38      67 ..      27      55 ..      17      60 .. 0.79
   2 ?   -3.3   0.0       2.5   8.9e+03      47      58 ..      97     108 ..      83     116 .. 0.59
   3 ?   -2.2   0.1       1.2   4.2e+03      42      53 ..     149     160 ..     148     163 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00012
     UPF0542 38 saflsyKLakelkkqekekklkakrkania 67
                s   s K ak lk+q++++k  + ++a i 
  CCD24113.1 27 SKLYSAKAAKFLKAQRRRQKNEE-KQATIK 55
                556799***************99.555554 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.5
     UPF0542  47 kelkkqekekkl 58 
                 k l + e  kk+
  CCD24113.1  97 KFLAAIETTKKK 108
                 444444444444 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.2
     UPF0542  42 syKLakelkkqe 53 
                 s KLa +l ++e
  CCD24113.1 149 SIKLALKLAREE 160
                 556666665555 PP

>> Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3      0.11   3.8e+02       8      39 ..      21      53 ..      20      72 .. 0.53
   2 ?    9.0   1.7   0.00045       1.6      54      85 .]     181     212 ..      93     212 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.11
  Syntaxin-18_N  8 kasVktvk...asssskseekeakkrkkkrlkksk 39
                   +a+V+t k   a  + ++  k +++r+k+++k+ +
     CCD24113.1 21 RAFVSTSKlysA--KAAKFLKAQRRRQKNEEKQAT 53
                   567777765330..333333333333333333333 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00045
  Syntaxin-18_N  54 hItkLrkfLleirkaYlnvrshlmtdqerdni 85 
                     I ++ + + e+rk+Y n+r+  m  q+r++i
     CCD24113.1 181 RILNMAHHIQEHRKDYSNTRHLRMLVQQRQSI 212
                    578889999**********9766999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1622  (0.090468); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1954.26
//
Query:       CCD24114.1  [L=685]
Description: hypothetical protein NDAI_0C04540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-63  211.1  34.3    8.6e-40  136.0   9.9    3.2  3  MatE      MatE


Domain annotation for each model (and alignments):
>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   9.9   4.8e-44   8.6e-40       1     161 []     228     387 ..     228     387 .. 0.99
   2 ?   -0.0   0.9     0.033     6e+02      29      46 ..     401     418 ..     400     422 .. 0.85
   3 !   85.8   8.6   1.3e-28   2.4e-24       9     160 ..     457     609 ..     451     610 .. 0.97

  Alignments for each domain:
  == domain 1  score: 136.0 bits;  conditional E-value: 4.8e-44
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqils 99 
                 P+++++lle+++ ++++l vg+lg+++lAavs+a+++++++ +++ g++t+l+tl+ qa+G++++  ++  l++++ ++l++ +++a++ +++se il+
  CCD24114.1 228 PLIFTFLLEQIFPMVCSLTVGHLGKNELAAVSLASMTSNITLAIFEGIATSLDTLCPQAYGSGRYYSVGIHLQRCITFSLIIFVPFAFF-WFYSESILY 325
                 9****************************************************************************************.********* PP

        MatE 100 lftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislislllniplnyl 161
                 ++  ++e+++l++++lr+lilg+pa+++++ l+++l+++g++ ++ y++ i+++lni+++y+
  CCD24114.1 326 MVVPEKELIALTSQFLRVLILGAPAYIFFENLKRFLQAQGIFDAGIYVLTICAPLNILISYT 387
                 ***********************************************************996 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.033
        MatE  29 Aavsialsilsllfvfll 46 
                 +av++++++++++f++ll
  CCD24114.1 401 SAVAVVINFWMMFFLLLL 418
                 6999********999765 PP

  == domain 3  score: 85.8 bits;  conditional E-value: 1.3e-28
        MatE   9 esllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilslftqdeev 107
                 e l++ ++tl+ +++g++ lAa s++++ + ll++++++++++++t++++++Gak+ + a+ +  +gl ++++ +l  +ll++l +++i+s+f+ de+v
  CCD24114.1 457 EELSYELLTLFSAYFGTSYLAAQSAVSTMAALLYMVPFAIGISTSTRIANFIGAKSSEHAHISSKVGLTFSFGAGLTNCLLLVLGRNFIASVFSRDEDV 555
                 6688999******************************************************************************************** PP

        MatE 108 lelakrylrililgipalalqlvlsgilrgagktkvplyislisl.llniplny 160
                  +l++ +l++++l++ +++l+ v+ + lrg+g + ++ +++l+s+ l++ipl+ 
  CCD24114.1 556 KKLISGLLPLVGLVQNFDSLNAVAGSCLRGQGMQSLGSVVNLLSYyLFGIPLAL 609
                 ***************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       643  (0.0358637); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.38
# Mc/sec: 5362.75
//
Query:       CCD24115.1  [L=189]
Description: hypothetical protein NDAI_0C04550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-34  117.2   0.2    3.3e-34  117.2   0.2    1.5  2  Fcf1      Fcf1
    6.9e-14   52.2   0.0    1.1e-13   51.5   0.0    1.3  1  PIN_9     PIN like domain
     0.0076   16.5   0.0      0.018   15.3   0.0    1.5  1  Imm-NTF2  NTF2 fold immunity protein


Domain annotation for each model (and alignments):
>> Fcf1  Fcf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.5   8.7e+03      35      43 ..      21      29 ..       5      44 .. 0.57
   2 !  117.2   0.2   5.6e-38   3.3e-34       1      99 []      88     184 ..      88     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.5
                TSEEE---- CS
        Fcf1 35 tferlkCnh 43
                + +rlk n 
  CCD24115.1 21 KDQRLKANQ 29
                223333333 PP

  == domain 2  score: 117.2 bits;  conditional E-value: 5.6e-38
                 HHCTS-EEEEEEHHHHHHHHHCT..-HHHHHHHT.T.SEEE----SS---HHHHHHHHH-BTB-TT-EEEE-S-HHHHHHHHTSTT--EEEEE--EEEE CS
        Fcf1   1 ktLqakvkpliTqCviaeleklgkklkealkiak.t.ferlkCnhkkptsaddClvsvvkkkknkkryivAtqDkdlrrrlrkipgvPilyikrsvmvl 97 
                 ++L ak++pliT+Cv+aeleklg+k++ alk+a+ + ++rl+C+h k+t+addC+v++v    ++k+yivAt+D  l++r+rkipg+P++ +  + +v+
  CCD24115.1  88 DCLLAKCNPLITDCVMAELEKLGPKYRIALKLARdPrIKRLSCSH-KGTYADDCIVNRVL---QHKCYIVATNDAGLKQRVRKIPGIPLMSVGGHSYVI 182
                 69********************************978********.**************...49********************************** PP

                 -- CS
        Fcf1  98 Ek 99 
                 Ek
  CCD24115.1 183 EK 184
                 97 PP

>> PIN_9  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   1.8e-17   1.1e-13       1     105 [.      65     166 ..      65     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 1.8e-17
       PIN_9   1 vilDtnaLmipvqfgvdifeel.erllgsvelvvpkavleELerlakagkgkertaakvalsL.aerceiveaeeekaDdailelakeldaavlvTnDr 97 
                 v++Dtn++   +q ++d++  + + ll + + ++ + v++ELe+l     +k r a k+a++   +r+++  +++ +aDd i++   + ++ +++TnD+
  CCD24115.1  65 VLIDTNFINFSIQKKIDLVRGMmDCLLAKCNPLITDCVMAELEKL----GPKYRIALKLARDPrIKRLSCS-HKGTYADDCIVNRVLQHKCYIVATNDA 158
                 89****************998715566******************....899**********945555555.5559*********************** PP

       PIN_9  98 eLkkrlle 105
                 +Lk+r+++
  CCD24115.1 159 GLKQRVRK 166
                 ******97 PP

>> Imm-NTF2  NTF2 fold immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.9e-06     0.018      38     101 ..     104     165 ..      95     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.9e-06
    Imm-NTF2  38 keleaifeky.vsekkrkqgraislslseeptYdnneevldseeltknkiviitedlselkqkyR 101
                  ele++  ky +  k  +  r   ls+s+++tY ++ ++++   + ++k++i++ +   lkq+ R
  CCD24115.1 104 AELEKLGPKYrIALKLARDPRIKRLSCSHKGTY-ADDCIVNR--VLQHKCYIVATNDAGLKQRVR 165
                 567777777755667777778899*********.99999876..999******999888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 1608.79
//
Query:       CCD24116.1  [L=570]
Description: hypothetical protein NDAI_0C04560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.5e-173  576.3  36.7   5.1e-173  576.1  36.7    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.1e-26   93.6  31.6    2.2e-26   92.7  22.5    2.1  2  MFS_1     Major Facilitator Superfamily
      0.005   17.0   4.0      0.005   17.0   4.0    5.5  5  DUF3792   Protein of unknown function (DUF3792)
  ------ inclusion threshold ------
          3    8.1  12.7       0.85    9.9   0.5    3.3  3  DUF4383   Domain of unknown function (DUF4383)
        6.7    7.0  10.4        1.8    8.9   0.8    2.9  2  Gate      Nucleoside recognition


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  576.1  36.7  1.4e-176  5.1e-173       1     452 []      68     528 ..      68     528 .. 0.99

  Alignments for each domain:
  == domain 1  score: 576.1 bits;  conditional E-value: 1.4e-176
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 +++++a+gg++fg+dtg+i++f+++++f+++fg+++++++++ s+v++glivsif++G++iG+++++++gd++GRk +l+i+++++++g+v+q+a+   
  CCD24116.1  68 MCIMVAFGGFVFGWDTGTISGFVAQTDFLRRFGQKHHDGTHYLSKVRMGLIVSIFNIGCAIGGIILSKAGDMYGRKMGLIIVVIIYIVGIVIQIASV-- 164
                 69***********************************************************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                 ++++++++gR+++G+gvG++ vl+Pm+isE++pk+lRg+lv +yql+it+Gi++++++++g++++sn+++wr++lgl++++al+++ +++f+PESPryl
  CCD24116.1 165 KAWYQYFIGRIISGLGVGGIAVLSPMLISEVSPKHLRGTLVACYQLMITLGIFLGYCTNYGTKNYSNSVQWRVPLGLCFAWALFMIGGMTFVPESPRYL 263
                 78************************************************************************************************* PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksllv 292
                 ve+gk +eak++++ ++++  +d+++ +e++  +a++e+e    +asw+el+++k+ ++qrl++g+v+q++qqltG n+++yy++ +f+++gl++s+++
  CCD24116.1 264 VEVGKIDEAKRSISISNKVGIDDPSVIAEVEVVQAGVEAEklagNASWGELFQTKNkIFQRLIMGCVIQCLQQLTGDNYFFYYGTIVFKSVGLEDSFQT 362
                 **************************************999********************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS........CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvR 384
                 +ii+gvvnf++tfv+i++v+rfGRR++ll+Gaa+m++c+v+++  +v+ l+++++     k+a++++i f++++i++fa++w+p+p+v+ sE+fp++v+
  CCD24116.1 363 SIIIGVVNFASTFVGIYVVERFGRRRCLLWGAATMTACMVVYAsvGVTRLWPHGQgngssKGAGNCMICFTCFYIFCFATTWAPIPFVVNSETFPLRVK 461
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 385 skalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 sk++++a a+nwl+ flis+++p+it+ai+ +y+++vf+g++++++++vfff+petkg+tlee+++++
  CCD24116.1 462 SKCMSVAQACNWLWGFLISFFTPFITGAIN-FYYGYVFMGCLCFSFFYVFFFIPETKGLTLEEVNTMW 528
                 ******************************.***********************************99 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7  22.5     6e-30   2.2e-26       1     352 [.      72     479 ..      72     480 .. 0.80
   2 !   11.0   3.6     4e-05      0.14     106     187 ..     448     526 ..     445     558 .. 0.79

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 6e-30
       MFS_1   1 lllaaflsalarsilgpalpl.alaedlg.........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.l 87 
                 +++++f+ +++ ++++ ++ +    + +g         +s+  +gl+++++ +g+a++ ++l+  +d +Gr+  l++ ++++++g +++ +a    w  
  CCD24116.1  72 VAFGGFVFGWDTGTISGFVAQtDFLRRFGqkhhdgthyLSKVRMGLIVSIFNIGCAIGGIILSKAGDMYGRKMGLIIVVIIYIVG-IVIQIAsVKAWyQ 169
                 5899****************99999999999999999999999******************************************.5555444556669 PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrk 182
                  +++r+++Glg g+++ ++  li++++pk  rg  ++++++++ lG+ lg+    + + +++    Wr++  ++ + +l+++  ++ ++pe+p+    +
  CCD24116.1 170 YFIGRIISGLGVGGIAVLSPMLISEVSPKHLRGTLVACYQLMITLGIFLGYC-TNYGTKNYSnsvqWRVPLGLCFAWALFMIG-GMTFVPESPRYLVEV 266
                 **************************************************55.5555556667888**************955.458888888888888 PP

       MFS_1 183 spkeee...............................kgtgpaplvpawkallkdp.vlw.....illialllfffgfsglltllplylqevlgls.gl 243
                  +++e                                k  g+a+    w++l+  +  ++      ++i +l   +g ++++++ ++   +  gl  + 
  CCD24116.1 267 GKIDEAkrsisisnkvgiddpsviaevevvqagveaeKLAGNAS----WGELFQTKnKIFqrlimGCVIQCLQQLTGDNYFFYYGTIV-FKSVGLEdS- 359
                 88888799999999999999988888888776665554444444....5555554423333112234444444455555577777775.888888844. PP

       MFS_1 244 llaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..........ssavllllvlvl...iGfglgfvfpsllalasdla 329
                 ++++++++++ +++    +++ +++ r+grrr ll++ + ++++ + +a ++vt          ss+ ++ +++ +   + f+++++++++  ++++ +
  CCD24116.1 360 FQTSIIIGVVNFAS---TFVGIYVVERFGRRRCLLWGAATMTACMVVYASVGVTrlwphgqgngSSKGAGNCMICFtcfYIFCFATTWAPIPFVVNSET 455
                 88887777777777...87888888*****************************999999999966666666444445366688888766666665544 PP

       MFS_1 330 .ppeeagtasglfntagslggalg 352
                  p +   + +++++ ++ l g+l 
  CCD24116.1 456 fPLRVKSKCMSVAQACNWLWGFLI 479
                 499**************9999985 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 4e-05
       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                   ++ ++ fp + +++ +++++a++ l   l   + ++++ ++++ + +++++ +++ +f    ++++ ++++  + +++  
  CCD24116.1 448 PFVVNSETFPLRVKSKCMSVAQACNWLWGFLISFFTPFITGAINFYYGYVFMGCLCFSFFY---VFFFIPETKGLTLEEVNT 526
                 5677889999999***********999999999*************************866...777777766655555444 PP

>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.016        56      38      58 ..      61      81 ..      52      89 .. 0.81
   2 ?    4.3  14.5     0.012        42      41     111 ..     118     180 ..     107     188 .. 0.64
   3 ?   -2.4   4.9       1.4   5.1e+03      67     113 ..     201     253 ..     174     255 .. 0.41
   4 !   17.0   4.0   1.4e-06     0.005      34     104 ..     359     431 ..     343     456 .. 0.78
   5 ?   -3.6   6.1       3.5   1.3e+04      41      83 ..     468     510 ..     428     526 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.016
     DUF3792 38 sililiililsvfigGflagk 58
                 ++++ i++++v++gGf++g 
  CCD24116.1 61 AYVTVSIMCIMVAFGGFVFGW 81
                56788899999******9986 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.012
     DUF3792  41 iliililsvfigGflagkkakkkgllnGllvGllyflillllsllikksgsafslkllikllllllagaiG 111
                 i+ i  ++++igG     +  k g ++G  +Gl++++i+++++++i    +++s+k++  ++++ +++ +G
  CCD24116.1 118 IVSIFNIGCAIGG----IILSKAGDMYGRKMGLIIVVIIYIVGIVI----QIASVKAWYQYFIGRIISGLG 180
                 2333334445555....55577788999999999999999999999....555667776666644333322 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.4
     DUF3792  67 nGllvGllyflil..lllslli.kksgsafslkll.iklllll..lagaiGGi 113
                  G lv+    +i+  ++l++ + + +++ ++  ++ + l l++  ++ +iGG+
  CCD24116.1 201 RGTLVACYQLMITlgIFLGYCTnYGTKNYSNSVQWrVPLGLCFawALFMIGGM 253
                 33333333222211223333332222222222222333333444466666666 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 1.4e-06
     DUF3792  34 ekvlsililiililsvfigGflagkkakkkgllnGllvGllyflil..lllsllikksgsafslkllikllll 104
                 + + si+i ++ ++s+f+g +++ +  +++ ll+G++++ ++++++  + ++ l+ +++   s k +   +++
  CCD24116.1 359 SFQTSIIIGVVNFASTFVGIYVVERFGRRRCLLWGAATMTACMVVYasVGVTRLWPHGQGNGSSKGAGNCMIC 431
                 457899**************************************96336666666444444455555555555 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 3.5
     DUF3792  41 iliililsvfigGflagkkakkkgllnGllvGllyflilllls 83 
                 ++++  l  f+ +f++  +++   +++G +++ ++++ ++ + 
  CCD24116.1 468 AQACNWLWGFLISFFTPFITGAINFYYGYVFMGCLCFSFFYVF 510
                 4555555555555555555555555555544333333323333 PP

>> DUF4383  Domain of unknown function (DUF4383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   2.5     0.021        75      18      92 ..      84     161 ..      64     173 .. 0.73
   2 ?    9.9   0.5   0.00024      0.85      44      93 ..     359     408 ..     340     417 .. 0.92
   3 ?   -0.8   0.1       0.5   1.8e+03      69      79 ..     467     477 ..     420     500 .. 0.61

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.021
     DUF4383  18 GfiPgltseydelalag..easgakllglfqvnllhnlvhllvGvlglaaa.rsasgarlyllllgvvylllailgll 92 
                 G i+g+++++d l+ +g  +++g + l   ++ l+ ++  +   + g++++ +++  +r ++l++ v+  +++i+  +
  CCD24116.1  84 GTISGFVAQTDFLRRFGqkHHDGTHYLSKVRMGLIVSIFNIGCAIGGIILSkAGDMYGRKMGLIIVVIIYIVGIVIQI 161
                 55566666666555554114445555666899*******999999999999888999999988887777766666544 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00024
     DUF4383  44 lfqvnllhnlvhllvGvlglaaarsasgarlyllllgvvylllailgllv 93 
                  fq++++  +v  +  ++g+++  + ++ r  l++++ + + ++++  + 
  CCD24116.1 359 SFQTSIIIGVVNFASTFVGIYVVERFGRRRCLLWGAATMTACMVVYASVG 408
                 59*******************************************98765 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.5
     DUF4383  69 asgarlyllll 79 
                  ++a + l+++
  CCD24116.1 467 VAQACNWLWGF 477
                 23333333334 PP

>> Gate  Nucleoside recognition
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   3.1     0.093   3.3e+02       2      47 ..     142     186 ..     141     196 .. 0.85
   2 ?    8.9   0.8   0.00049       1.8      53     104 ..     396     445 ..     325     453 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.093
        Gate   2 lkagpiillasiliwflss.ssllgrigkllepvfaplgqeldwkat 47 
                 +k+g ii++++ ++++  +  s+ ++   +++ +++ lg    + a+
  CCD24116.1 142 RKMGLIIVVIIYIVGIVIQiASVKAWYQYFIGRIISGLG--VGGIAV 186
                 5899************988899999******99999999..655555 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00049
        Gate  53 gfaakevvvgtlgtlytsalgellqgfdtpks.alafllfvllytpcvatlav 104
                  ++a +vv++++g+++   l+   qg  + k    ++++f+ +y+ c+at+ +
  CCD24116.1 396 TMTACMVVYASVGVTR---LWPHGQGNGSSKGaGNCMICFTCFYIFCFATTWA 445
                 3344457888888887...9999999999999566999************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       806  (0.0449551); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.38
# Mc/sec: 4504.66
//
Query:       CCD24117.1  [L=568]
Description: hypothetical protein NDAI_0C04570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.4e-170  565.7  33.9   8.5e-170  565.5  33.9    1.0  1  Sugar_tr         Sugar (and other) transporter
    1.3e-30  106.6  32.7    2.7e-29  102.2  25.0    2.1  2  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.65    9.5   5.1        1.3    8.5   1.4    3.0  2  ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  565.5  33.9  1.4e-173  8.5e-170       2     452 .]      67     526 ..      66     526 .. 0.99

  Alignments for each domain:
  == domain 1  score: 565.5 bits;  conditional E-value: 1.4e-173
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTS CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgkn 100
                 + ++a+gg++fg+dtg+i++f+++++f+++fg+++++++++ s+v++glivsif++G++iG++++++lgd+ GRk++l+i++v++++g+++q+a+   +
  CCD24117.1  67 CAMVAFGGFVFGWDTGTISGFVAQTDFLRRFGQKHHDGTHYLSKVRMGLIVSIFNIGCAIGGIVLSKLGDTRGRKQGLIIVVVIYIVGIIIQIASV--K 163
                 889*********************************************************************************************..7 PP

                 S-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHH CS
    Sugar_tr 101 svevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPrylv 199
                 +++++++gR+++G+gvG++ vl+Pm+isE+Apk++Rg+lvs+yql+it+Gi++++++++g++++sn+++wr++lgl++++al+++ +++f+PESPrylv
  CCD24117.1 164 AWYQYFIGRIISGLGVGGIAVLSPMLISEVAPKDMRGTLVSCYQLMITLGIFLGYCTNYGTKNYSNSVQWRVPLGLCFAWALFMIGGMTFVPESPRYLV 262
                 8************************************************************************************************** PP

                 HTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHH CS
    Sugar_tr 200 ekgkeeeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksllvt 293
                 e+gk +ea+++l+++++++++++ +++e d +ea++ee     +a+w+el++ k  ++qr+++g+++q++qqltG n+++yy++ +f+ +g+++s++++
  CCD24117.1 263 EVGKIDEARASLSTVNKVAGDHPFIQQELDLIEASVEEAraagSATWGELFTGKPaMLQRTMLGIMIQSLQQLTGDNYFFYYGTIVFNAVGMTDSFETS 361
                 ***********************************99999*************99******************************************** PP

                 HHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS........CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHH CS
    Sugar_tr 294 iivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRs 385
                 i++gvvn ++t +++++vdrfGRR++ll Ga+gm++c v+++  +v+ l+++++     k+a++++i f +++i++fa++w+p+ +v++sE+fp++v+s
  CCD24117.1 362 IVFGVVNLFSTGCSLYTVDRFGRRNCLLYGAIGMICCYVVYAsvGVTRLWPNGQgngssKGAGNCMICFACFYIFCFATTWAPIAYVVISETFPLRVKS 460
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 386 kalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 ka+++a+a+nw++ fli++++p+it+ai+ +y+++vf+g++v+++++vfffvpetkg+tlee++e++
  CCD24117.1 461 KAMSVATAANWIWGFLIGFFTPFITGAIN-FYYGYVFMGCMVFAYFYVFFFVPETKGLTLEEVNEMY 526
                 *****************************.**********************************997 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2  25.0   4.6e-33   2.7e-29       1     351 [.      70     476 ..      70     477 .. 0.83
   2 !   15.7   9.8   9.3e-07    0.0056     101     192 ..     441     534 ..     427     567 .. 0.79

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 4.6e-33
       MFS_1   1 lllaaflsalarsilgpalpl.alaedlg.........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.l 87 
                 +++++f+ +++ ++++ ++ +    + +g         +s+  +gl+++++ +g+a++ ++l+ l+d  Gr+  l++ ++++++g +++ +a    w  
  CCD24117.1  70 VAFGGFVFGWDTGTISGFVAQtDFLRRFGqkhhdgthyLSKVRMGLIVSIFNIGCAIGGIVLSKLGDTRGRKQGLIIVVVIYIVG-IIIQIAsVKAWyQ 167
                 5899****************99999999999999999999999******************************************.6666655556669 PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrk 182
                  +++r+++Glg g+++ ++  li++++pk+ rg  ++++++++ lG+ lg+    + + +++    Wr++  ++ + +l+++  ++ ++pe+p+    +
  CCD24117.1 168 YFIGRIISGLGVGGIAVLSPMLISEVAPKDMRGTLVSCYQLMITLGIFLGYC-TNYGTKNYSnsvqWRVPLGLCFAWALFMIG-GMTFVPESPRYLVEV 264
                 **************************************************55.5555556667888**************955.458889999999999 PP

       MFS_1 183 spkeee.........................kgtgpaplvp..........awkallkdpvlw......illialllfffgfsglltllplylqevlgl 240
                  +++e                          +        +           w++l++ ++ +       ++i +l   +g ++++++ ++      g+
  CCD24117.1 265 GKIDEAraslstvnkvagdhpfiqqeldlieA--------SveearaagsaTWGELFTGKPAMlqrtmlGIMIQSLQQLTGDNYFFYYGTIV-FNAVGM 354
                 88888788888888777777766666555551........044455555677********88434444456666666666666688888885.999999 PP

       MFS_1 241 s.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..........ssavllllvlvl...iGfglgfv.fpsllal 324
                 + + ++++++++++ l++     ++ + +dr+grr+ ll + ++++++++ +a ++vt          ss+ ++ +++ +   + f+++++  p++ ++
  CCD24117.1 355 TdS-FETSIVFGVVNLFS---TGCSLYTVDRFGRRNCLLYGAIGMICCYVVYASVGVTrlwpngqgngSSKGAGNCMICFacfYIFCFATTwAPIAYVV 449
                 955.99999999999998...889****************************************99996666655533333435558888845666667 PP

       MFS_1 325 asdlappeeagtasglfntagslggal 351
                 +s+ +p +   +a+++++ a+ + g+l
  CCD24117.1 450 ISETFPLRVKSKAMSVATAANWIWGFL 476
                 78888****************999987 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 9.3e-07
       MFS_1 101 alfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.....kgtg 192
                 + +p+++++i++ fp + +++a+++++a++ +   l   + ++++ ++++ + +++++ + +  f    +++++++++  + +++ e        ++
  CCD24117.1 441 TWAPIAYVVISETFPLRVKSKAMSVATAANWIWGFLIGFFTPFITGAINFYYGYVFMGCMVFAYFY---VFFFVPETKGLTLEEVNEMysegvLPWK 534
                 45688999********************9988887777*******9999*9999999999999866...8888888888777777775444443333 PP

>> ATP1G1_PLM_MAT8  ATP1G1/PLM/MAT8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.4   0.00022       1.3      14      31 ..     140     157 ..     139     163 .. 0.90
   2 ?    0.4   0.1     0.075   4.5e+02      17      29 ..     238     250 ..     234     257 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00022
                      HHHHHHHHHHHHHHHHHH CS
  ATP1G1_PLM_MAT8  14 rlgGLifAglLfivGili 31 
                      r++GLi+ ++  ivGi+i
       CCD24117.1 140 RKQGLIIVVVIYIVGIII 157
                      899*************99 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.075
                      HHHHHHHHHHHHH CS
  ATP1G1_PLM_MAT8  17 GLifAglLfivGi 29 
                      GL fA  Lf++G 
       CCD24117.1 238 GLCFAWALFMIGG 250
                      99*******9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3870.19
//
Query:       CCD24118.1  [L=454]
Description: hypothetical protein NDAI_0C04580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-68  228.4   1.4    8.7e-68  227.5   1.4    1.5  1  Svf1           Svf1-like N-terminal lipocalin domain
      6e-66  221.3   1.0    1.3e-65  220.2   1.0    1.6  1  Svf1_C         Svf1-like C-terminal lipocalin-like domain
  ------ inclusion threshold ------
       0.12   11.3   1.1       0.19   10.7   1.1    1.3  1  DUF913         Domain of Unknown Function (DUF913)
       0.38    9.5   4.1        0.1   11.3   1.1    1.6  2  Presenilin     Presenilin
       0.52    9.4   6.8       0.83    8.7   6.8    1.2  1  Roughex        Drosophila roughex protein
       0.58   10.4  13.3        1.2    9.4  13.3    1.4  1  PTPRCAP        Protein tyrosine phosphatase receptor type C-a
       0.71    9.6   3.7        1.1    9.0   3.7    1.2  1  Connexin       Connexin
          1    8.5   2.5        1.7    7.8   2.5    1.3  1  Zip            ZIP Zinc transporter
        1.9    8.4   7.3        3.7    7.5   7.3    1.4  1  LRRC37AB_C     LRRC37A/B like protein 1 C-terminal domain
        2.3    7.9   8.3          6    6.5   8.3    1.7  1  FAM176         FAM176 family
        2.8    7.2   6.6        5.1    6.4   6.6    1.3  1  DUF4820        Domain of unknown function (DUF4820)
        3.2    5.8  12.7        4.8    5.2  12.7    1.2  1  DNA_pol_phi    DNA polymerase phi
        3.7    6.8  10.1        6.9    5.9  10.1    1.4  1  NOA36          NOA36 protein
        5.3    5.7   5.6          9    5.0   5.6    1.3  1  O-antigen_lig  O-antigen ligase like membrane protein
        7.1    7.4  13.7        3.4    8.4   9.0    2.3  2  FYDLN_acid     Protein of unknown function (FYDLN_acid)
        8.5    6.5   9.0          2    8.6   5.6    1.6  2  CPSF100_C      Cleavage and polyadenylation factor 2 C-termin


Domain annotation for each model (and alignments):
>> Svf1  Svf1-like N-terminal lipocalin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.5   1.4   7.7e-71   8.7e-68       1     164 []      56     268 ..      56     268 .. 0.97

  Alignments for each domain:
  == domain 1  score: 227.5 bits;  conditional E-value: 7.7e-71
        Svf1   1 vEtqtfYftdldggivgfvQiiySnviGlyktaqftfkifdskekkeknlWkstklenfeidkasfyadnlsielkneegeqykikssvnkelkvdltv 99 
                 vEt tfYf+dl++givgf+Qii+Sn++Gl+++aqftf+ifdsk++ke nlW+stklenf+i++++fyadnls+el n+e+++y++ s+v++++k+dl v
  CCD24118.1  56 VETLTFYFSDLNTGIVGFAQIIHSNIVGLHTQAQFTFRIFDSKNPKELNLWTSTKLENFRIEGPNFYADNLSVEL-NDENTTYHFISEVCEQSKIDLIV 153
                 8*******************************************6666***************************.99********************* PP

        Svf1 100 trlapGfklgedgttyfgddieepwgsmrHvfwPrnkveGtivlkk...............................................edkkie 151
                 trl+pG+k+g+d+tty+g+d++epwg+mrHvfwPrn+++G+i+lk                                                +d+ i+
  CCD24118.1 154 TRLTPGAKAGDDPTTYYGNDMDEPWGTMRHVFWPRNSCHGSINLKIkqeneekteteadkkdeqeelneqteeqeqeqeqeqeqeeeedhityKDRLIT 252
                 ********************************************778899************************************9999999999999 PP

        Svf1 152 ftge...lglfvdAlq 164
                 f ++   +++fv+A+q
  CCD24118.1 253 FGENepvYSMFVMAFQ 268
                 9999999*******99 PP

>> Svf1_C  Svf1-like C-terminal lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.2   1.0   1.2e-68   1.3e-65       1     165 []     270     441 ..     270     441 .. 0.97

  Alignments for each domain:
  == domain 1  score: 220.2 bits;  conditional E-value: 1.2e-68
      Svf1_C   1 mkpnhaAksWnflnFqsekvsavlmeFttpksygntkvsigiivkddkilavtvdnkvehleaklDeetgwkvPksiklelkgkksevkdeeve..... 94 
                 mkp+haAk+Wnf+ F+sek++avlmeFttpksygntkvs+gi+++d++ilavt+dn+v+hl+a++D+ +gw++Pk+ +++++g ks+v+d+ev+     
  CCD24118.1 270 MKPHHAAKAWNFIYFHSEKHTAVLMEFTTPKSYGNTKVSVGILTSDKDILAVTTDNQVTHLDAEIDS-VGWNIPKNFRVDFNGVKSTVTDDEVKnnevk 367
                 9******************************************************************.******************8888888778888 PP

      Svf1_C  95 ......akleadleelvervDvlaeiPqfvkkivsgvagtkPYiYqylnkkelklkvedeeevkekGllfaEatfis 165
                       a++e++l++lver+Dv++e+P fvk+ivsgvagtkPYiYqy+ ++e++lkv+dee   +kGl++aE+tfis
  CCD24118.1 368 dddriaATVEGPLNNLVERIDVMGEVPGFVKNIVSGVAGTKPYIYQYASDDEFTLKVNDEE---VKGLAWAEVTFIS 441
                 888888*****************************************************95...9***********8 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.1   0.00017      0.19     280     327 ..     200     247 ..     135     277 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00017
      DUF913 280 ssetkeeekssededvemedaeeetesesdeseeseeekeknslldyi 327
                 ++e++e++++++d+++e+e+ +e+te++++e+e+++e++e+++ + y 
  CCD24118.1 200 KQENEEKTETEADKKDEQEELNEQTEEQEQEQEQEQEQEEEEDHITYK 247
                 222222222222222333333333333333333333334444444444 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       2.3   2.5e+03     120     143 ..      55      78 ..      53      88 .. 0.78
   2 ?   11.3   1.1   9.1e-05       0.1     274     311 ..     203     240 ..     144     291 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.3
  Presenilin 120 pldyitlllllwnfgvvGviaifw 143
                  ++ +t+++  +n g+vG+  i  
  CCD24118.1  55 NVETLTFYFSDLNTGIVGFAQIIH 78 
                 57789999999*******987644 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 9.1e-05
  Presenilin 274 eseeesseaessaeesseekeseessesseeeeeeeee 311
                 ++e++++ea++++e+++ ++++ee+++++e+e+e+eee
  CCD24118.1 203 NEEKTETEADKKDEQEELNEQTEEQEQEQEQEQEQEEE 240
                 11111111111111111111111111111111111111 PP

>> Roughex  Drosophila roughex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   6.8   0.00074      0.83     263     304 ..     202     243 ..     175     266 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00074
     Roughex 263 eekkddasepdlpdqnkeedkdeqeqqaeqeeqaqqqaeeap 304
                 e+++   +e d  d+++e +++ +eq+ eqe++++q+ ee  
  CCD24118.1 202 ENEEKTETEADKKDEQEELNEQTEEQEQEQEQEQEQEEEEDH 243
                 444445567777777777677677777777777777777754 PP

>> PTPRCAP  Protein tyrosine phosphatase receptor type C-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  13.3    0.0011       1.2      18      84 ..     178     241 ..     167     257 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
     PTPRCAP  18 wgrtrrllwasppgrWlraraedgeedeeeEdqedeedeeedsedleggeeeaesqeeeqaeseeag 84 
                 wg  r+++w        +++++++ ++e+eE+ e e d+ +++e+l++++ee+e+++e+++e+ee +
  CCD24118.1 178 WGTMRHVFWPRNSC---HGSINLKIKQENEEKTETEADKKDEQEELNEQTEEQEQEQEQEQEQEEEE 241
                 66666666666333...34446666666667777777776666667766666665444444443333 PP

>> Connexin  Connexin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.7   0.00096       1.1      97     141 ..     198     243 ..     184     270 .. 0.44

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00096
    Connexin  97 kiakeekekek.eeeekeeeekeeekkkkkekkkkkkkeeekekkk 141
                 ki++e++ek++ e+++k e+e+ +e+++++e+++++++e+e+e+++
  CCD24118.1 198 KIKQENEEKTEtEADKKDEQEELNEQTEEQEQEQEQEQEQEEEEDH 243
                 3444444333212222222222222222222222222222222221 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.5    0.0015       1.7     137     179 ..     201     243 ..     179     293 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0015
         Zip 137 ekedhvaeadtdadskeelrngkqeksesekeqaseeedkekl 179
                 + +++++e++ d++ ++e+ n+++e +e+e+eq++e+e++e+ 
  CCD24118.1 201 QENEEKTETEADKKDEQEELNEQTEEQEQEQEQEQEQEEEEDH 243
                 2222223333333333334444444444444444333333333 PP

>> LRRC37AB_C  LRRC37A/B like protein 1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   7.3    0.0033       3.7      66     117 ..     201     251 ..     196     267 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0033
  LRRC37AB_C  66 evkvskaewdtdqwktetyinesteaqseqkeqkskeltkevpeygynnkli 117
                 ++++ k+e ++d+  +++ +ne+te+q++++eq ++e+++e  + +y+++li
  CCD24118.1 201 QENEEKTETEADKKDEQEELNEQTEEQEQEQEQ-EQEQEEEEDHITYKDRLI 251
                 3445667778888889999****9977766666.667777788999999998 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.3    0.0054         6      51      90 ..     203     242 ..     187     263 .. 0.40

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0054
      FAM176  51 lerlkkkkkklkeesekasededeeeeeeeedsseseaee 90 
                  e++++++ ++k+e+e+ +e+++e+e+e+e++++++e+e+
  CCD24118.1 203 NEEKTETEADKKDEQEELNEQTEEQEQEQEQEQEQEEEED 242
                 2222222222222222222222222222222222222223 PP

>> DUF4820  Domain of unknown function (DUF4820)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.6    0.0046       5.1     157     213 ..     197     250 ..     180     259 .. 0.43

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0046
     DUF4820 157 vsseldnsartlterksekesaesseskkrnkeerdaeseeessedeeeeetvkell 213
                  + +++n+ +t t  +++k ++e++e +++ +e+++++++e+++e+ee+  t k++l
  CCD24118.1 197 LKIKQENEEKTET--EADK-KDEQEELNEQTEEQEQEQEQEQEQEEEEDHITYKDRL 250
                 3333333222222..2222.2222222222222223333333333445666666655 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  12.7    0.0043       4.8     642     682 ..     201     243 ..     184     256 .. 0.50

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0043
  DNA_pol_phi 642 dedeeddeeeeeeddeededse..edddeeesdedeededded 682
                  +e+ee+ e e++++de++e +e  e++++e+++e+e++e++++
   CCD24118.1 201 QENEEKTETEADKKDEQEELNEqtEEQEQEQEQEQEQEEEEDH 243
                  3333333333333333333333223333344444444444444 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  10.1    0.0062       6.9     265     305 ..     201     241 ..     162     244 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0062
       NOA36 265 sgddeddegdedddddddeedddeeeddedeeeeeeeesee 305
                  +++e+ e++ d++d+++e +++ ee+++++e+e+e+e+ee
  CCD24118.1 201 QENEEKTETEADKKDEQEELNEQTEEQEQEQEQEQEQEEEE 241
                 23555666677777777777776666666666666655544 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   5.6     0.008         9     266     349 ..     188     260 ..     179     264 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.008
  O-antigen_lig 266 yspiyrrkelkekeieiksekkeeeeikneikenykseglkeavleqyeyandkqfsqellkeeveslllsnRdlqlkvlkqvy 349
                     + +   ++lk+k+ +++++++e  +++++       e+l+e+  eq+++++++q+++e  +     + + +R + + +++ vy
     CCD24118.1 188 RNSCHGSINLKIKQENEEKTETEADKKDEQ-------EELNEQTEEQEQEQEQEQEQEEEED----HITYKDRLITFGENEPVY 260
                    555555666666666666666555555555.......7777777777777777777666444....556888888777777666 PP

>> FYDLN_acid  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   9.0    0.0031       3.4      46      92 ..     201     243 ..     185     257 .. 0.39
   2 ?    0.9   0.1      0.65   7.3e+02      73      88 ..     356     370 ..     315     432 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0031
  FYDLN_acid  46 aaaaeaeeakkkkeeeedeedeeeeedvsdedadeeeeedddddvdl 92 
                 +  +e+    +++e+++++e+ee +e+ +++++++e+e+++++++d 
  CCD24118.1 201 QENEEK----TETEADKKDEQEELNEQTEEQEQEQEQEQEQEEEEDH 243
                 222222....2222222222222222222222222222222222222 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.65
  FYDLN_acid  73 vsdedadeeeeedddd 88 
                 v+d++++++ e++ddd
  CCD24118.1 356 VTDDEVKNN-EVKDDD 370
                 222222222.223333 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.6    0.0018         2      31      82 ..     200     242 ..     178     258 .. 0.45
   2 ?   -3.1   0.1         7   7.9e+03      19      35 ..     325     352 ..     321     377 .. 0.44

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0018
   CPSF100_C  31 eeeaeeaeeeekeeeeeeeeeeeeeeeaskkqklaeksekeaseeeseekke 82 
                 ++e+ee++e+e+++++e+ee +e+ e         e+++++++e+e+ee+++
  CCD24118.1 200 KQENEEKTETEADKKDEQEELNEQTE---------EQEQEQEQEQEQEEEED 242
                 22222222222222222222211111.........22222222222222222 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7
   CPSF100_C  19 levatvtgeleieee.......a.....e 35 
                  +v+++++e++ + +              
  CCD24118.1 325 NQVTHLDAEID-SVGwnipknfRvdfngV 352
                 56777777776.33334443330333221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2763  (0.154108); expected 358.6 (0.02)
Passed bias filter:                     1202  (0.0670422); expected 358.6 (0.02)
Passed Vit filter:                       290  (0.0161749); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.45
# Mc/sec: 3060.36
//
Query:       CCD24119.1  [L=272]
Description: hypothetical protein NDAI_0C04590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-13   50.4   1.3    1.7e-06   28.1   0.1    3.0  3  Sod_Fe_C         Iron/manganese superoxide dismutases, C-term
  ------ inclusion threshold ------
      0.062   13.4   0.0      0.089   12.9   0.0    1.2  1  Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation dom
       0.28   10.8   1.9       0.29   10.7   0.1    1.8  2  DUF1666          Protein of unknown function (DUF1666)


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.28   1.6e+03      19      43 ..      20      44 ..      13      91 .. 0.72
   2 !   28.1   0.1   2.9e-10   1.7e-06       6      69 ..      98     158 ..      93     179 .. 0.72
   3 !   20.0   0.2   9.4e-08   0.00056      54     102 .]     217     266 ..     171     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.28
                HHHHHHHHHHHSSSSEEEEEEEETT CS
    Sod_Fe_C 19 fkkefkaaalavfgsGwawLvldkk 43
                + ++f+++ +++    +a L ++ +
  CCD24119.1 20 LIQQFSNTVTKRDVVNYASLLYNLN 44
                6678888888888888888887755 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 2.9e-10
                 HHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETT.TEEEEEEEETTTBGGGGTTCEEEEEE CS
    Sod_Fe_C   6 aeaieedfgslekfkkefkaaalavfgsGwawLvldkk.kkLeivttknqdnplvkeakplLalD 69 
                  + +e++fgs+e+fk+ f+++  a+ g G++wL+ +++ +++ + + +n++n+l      l++l+
  CCD24119.1  98 CKILESSFGSIEEFKTLFMNSCSAISGDGFTWLIAKRNsSNMMMESLTNSKNNLD----KLFVLN 158
                 567899*****************************99854455555555554443....233333 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 9.4e-08
                 TTBGGGGTTCEEEEEE-SGGGTHHHH.TT-HHHHHHHHGGGBBHHHHHHH CS
    Sod_Fe_C  54 qdnplvkeakplLalDvwehAYyldy.qnkradYieafwnvvnWkeveer 102
                 ++  ++++ +plLa+D    ++ +dy    +++Y++++w+ ++W  v++r
  CCD24119.1 217 HSVDVKAQYVPLLAIDGSPKSWLMDYgVFGKEQYLNHVWDSIDWYVVANR 266
                 2233444556****************5569***************99876 PP

>> Semialdhyde_dhC  Semialdehyde dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.5e-05     0.089      11     110 ..     111     210 ..     104     243 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.5e-05
                      EEEEEEEEEEEGGGCHHHHHHHHHHH.......HHHHHHSTTS.CTTTSSHHTTSEESTCSTBTTTTCHCBHHHHHHHHHHHHHCTESCSEEEE CS
  Semialdhyde_dhC  11 lervivatyqavSGaGkkgvreLlkq.......vaelqrsdeakpgvfgvpiagNlipyidkeedkgepetreelkavaetkkileftekvsat 97 
                       +++ +++++a+SG G      L+ +        + l++s++   + f ++      pyi + ++ +  + + + ++++e k ++e+ +     
       CCD24119.1 111 FKTLFMNSCSAISGDGFT---WLIAKrnssnmmMESLTNSKNNLDKLFVLNTYNAGSPYINDRLEMM-KMLANKANKMQEGKMEMETDD---VN 197
                      5678899**********6...7777778899988888888888888889998888999999988888.588888999999999999888...66 PP

                      EEEESBSSEEEEE CS
  Semialdhyde_dhC  98 cvrVPvlrGhsea 110
                        +VP++ G +  
       CCD24119.1 198 SEKVPIFEGMMSV 210
                      678******8865 PP

>> DUF1666  Protein of unknown function (DUF1666)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       0.9   5.4e+03     137     166 ..       2      31 ..       1      33 [. 0.78
   2 ?   10.7   0.1   4.9e-05      0.29      79     128 ..      65     114 ..      60     158 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.9
     DUF1666 137 lkallkrkvevedpedlellaelkkslqkk 166
                 l+++++++ + +d++ l+l+++ +++++k+
  CCD24119.1   2 LNNFTRSQGNTNDNNYLSLIQQFSNTVTKR 31 
                 677788888888999999999988888876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 4.9e-05
     DUF1666  79 rkLLqvPeiredklkdkkeeeekekeaisseelleiieesirtfweFlka 128
                 ++LLq+P++++d    +++++++  ++ + +++ +i+e+s   + eF   
  CCD24119.1  65 ESLLQIPDFSQDMDVAHSKNSNNILSQTNNDTFCKILESSFGSIEEFKTL 114
                 78********7666666665555559999**********98888887544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2067.99
//
Query:       CCD24120.1  [L=497]
Description: hypothetical protein NDAI_0C04600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-48  165.3   3.7    1.2e-48  165.3   3.7    3.9  4  Pal1      Pal1 cell morphology protein
  ------ inclusion threshold ------
      0.092   13.2   9.3       0.41   11.1   9.3    2.2  1  SRP72     SRP72 RNA-binding domain
        1.7    8.2  17.5        3.8    7.0  17.5    1.6  1  VIR_N     Virilizer, N-terminal
        4.8    6.5  11.5         10    5.4  11.5    1.5  1  SelP_N    Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> Pal1  Pal1 cell morphology protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   1.1      0.23     1e+03      64     100 ..     178     215 ..     154     232 .. 0.39
   2 !  165.3   3.7   2.8e-52   1.2e-48       1     133 [.     234     359 ..     234     364 .. 0.92
   3 ?   -0.9   1.8      0.56   2.5e+03      73     114 ..     384     423 ..     360     439 .. 0.50
   4 ?   -0.4   0.0      0.39   1.8e+03      55      77 ..     446     468 ..     429     493 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.23
        Pal1  64 evfGredeeddkdlaklsakakkkesset.kaakkssk 100
                 +++ +e++++d+++ +  +++++++++e+ + +++++k
  CCD24120.1 178 NIYPQEKSSSDRSHRSHRSHSHHHRDREHeRGTTDRKK 215
                 33333322222222111111111111111111111111 PP

  == domain 2  score: 165.3 bits;  conditional E-value: 2.8e-52
        Pal1   1 DtiDkLDvtglfgglfHHdGPfDAvtphrNknskaaPvlAfpkdgannslggagklnkksaldevfGredeeddkdlaklsakakkkessetkaakkss 99 
                 DtiDk+Dvt+lfgg+fHHdGPfDA+tphrNkn+kaaPv+Afp+dg+n+++gga  ++k+sa+devfGr d +dd+dl+kl+  ++     +++a++++ 
  CCD24120.1 234 DTIDKMDVTALFGGSFHHDGPFDACTPHRNKNNKAAPVMAFPVDGPNSTIGGA--SSKQSAMDEVFGRDDVDDDNDLYKLKGGNS-----TKDAIRTNI 325
                 9***************************************************9..999**********99999999666444333.....3468999** PP

        Pal1 100 kevtafdsktkaelvhGeetaGLGssTFldGapa 133
                  +++++d+k+ka+lvhG+ t  LGs+TFldGap 
  CCD24120.1 326 GDFKQMDAKNKATLVHGPITGALGSTTFLDGAPV 359
                 *********************************6 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.56
        Pal1  73 ddkdlaklsakakkkessetkaakksskevtafdsktkaelv 114
                 ++++  + + + +++ +++t++ ++ ++++   +s+++++  
  CCD24120.1 384 NNNK--TSNGNLRRNMTTNTHSSSRYNSDLNYSNSNNNTSRF 423
                 1111..112222223333334444444444444444444444 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.39
        Pal1  55 klnkksaldevfGredeeddkdl 77 
                 +++ ++++ +v+G++d+++d  l
  CCD24120.1 446 TQSDNADMGSVIGNQDDNEDVYL 468
                 56678889999999877776654 PP

>> SRP72  SRP72 RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   9.3     9e-05      0.41       6      43 ..     203     240 ..     172     241 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9e-05
       SRP72   6 krseetatsekgkkkkrkkkrkRkvklPKnydpgvtpD 43 
                  r+ e +t++ +k+++++kk kRk+k+PKn d+  ++D
  CCD24120.1 203 DREHERGTTDRKKSTSQSKKEKRKSKMPKNVDTIDKMD 240
                 55667777888888899***************988887 PP

>> VIR_N  Virilizer, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  17.5   0.00085       3.8     131     244 ..     112     225 ..     106     241 .. 0.50

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00085
       VIR_N 131 rvsipPppPapPvkelekedqynaspvrpeprePrtpe..lipaytgnvastpPpdddeeedaavpetveeeke.ensekredyleeesPeertslkae 226
                 r+   PppP+pP + ++k++   +   +++ r+   +e   ip+ +  ++ +p +++ +  ++a  + +++ek+  ++ +r++ ++ +   +r +   e
  CCD24120.1 112 RQQQAPPPPPPPSQSVSKNNFSTSTEEKERLRQRYLTEerTIPSSNPTIPPPPSYEEAAGRQKAKDNIYPQEKSsSDRSHRSHRSHSHHHRDREH---E 207
                 45556888888889888887766666666666666665114666666666666666666666666666664443134444444444444433322...2 PP

       VIR_N 227 ekdseaereeresseeie 244
                    ++++++ ++s++e  
  CCD24120.1 208 RGTTDRKKSTSQSKKEKR 225
                 222222222211111111 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  11.5    0.0023        10     184     225 ..     182     224 ..     160     235 .. 0.41

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0023
      SelP_N 184 hehahshkqghkhhekhghhHkekeelsesqqee..peeeekpa 225
                 +e++ s  ++h+ h++h hhH+++e+ + +++++  +++++k++
  CCD24120.1 182 QEKSSS-DRSHRSHRSHSHHHRDREHERGTTDRKksTSQSKKEK 224
                 222222.2445555555555544333333322221022222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1568  (0.0874561); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.41
# Mc/sec: 3643.25
//
Query:       CCD24121.1  [L=609]
Description: hypothetical protein NDAI_0C04610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-31  109.9   4.8    1.3e-29  103.7   4.8    2.5  1  Asp       Eukaryotic aspartyl protease
    0.00015   22.1   2.5    0.00079   19.7   0.6    2.8  2  TAXi_N    Xylanase inhibitor N-terminal


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   4.8   1.4e-33   1.3e-29       2     315 .]      45     434 ..      44     434 .. 0.77

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 1.4e-33
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTT....EST.SHCHHTSS-B-GGG-TT-E..EEEEEEEEECTTS.EEEEEEEEEEEEETTEEEEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxx.xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpssk....ckk.ssackshstydpskSstyk..kngkslsisYGdg.svsGflsqdtvkvggltvknqefge 92 
                 Y+++i++Gtpeq++++++DT  +++W  s +    c+  +s c s s+y  ++S+++   + +++ ++++ d+ +++G+ + d +++ +++v+  + ++
  CCD24121.1  45 YYINITMGTPEQQQELMIDTSQPYTWLLSGSqdlqCNRlNSGCLSGSLYYVKESTSAIciNPNRTYHMAFIDQsEINGTHVIDMMNFTNVDVNT-AYAH 142
                 9***************************9888899999899*******999999887656889999*******9*****************985.4455 PP

                 EEEESSHHHTTSS......................SSEEEE-S.........-GGGSCGGSCCHHHH.......HHHTTSSSSSEEEEEE-S....... CS
                 xxxxxxxxxxxxx......................xxxxxxxx.........xxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxx....... RF
         Asp  93 atkepgstflaak......................fdGiLGlg.........fkeisveeatpvfdn.......lvsqglikepvfsvylnr....... 146
                 +t +++++    +                        G LGl+         +        + +fdn       l++ +li+++ +s++l         
  CCD24121.1 143 STYNTKNNKGLINlgtnylgvsnvsfinaddtvpyAMGSLGLSgkitgtgtdI-------DSSNFDNsydfldrLYQTNLIDSHSYSLWLAMnqtyngt 234
                 55444432222223344666666666666666666666666665533333333.......33334445555666***************9544455555 PP

                 .....TTSSEEEEEESSEEGGGEEEEEEEEEESS..........TSSTEEEEEEEEETTEEE....EEEEEEEEE.....EETTCSSEEEEHHHHHHHH CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxx....xxxxxxxxx.....xxxxxxxxxxxxxxxxxxx RF
         Asp 147 .....eeeeggeivfGgvDeskykGsltyvpvts..........kgywqielesvtvggktv....lcssgcqai.....lDtGTsllalptsivekia 221
                        ++ g++++G+vD++ ++Gs+  +++             gy  i ++ + v +k+     +   +++++     lD+  + ++lp +++ ++a
  CCD24121.1 235 rvqnsVTSSFGKLILGAVDPTLFTGSFLQFEMLPalesdsatetIGYPIIPMGPIYVVSKSGemanV---TSKDFlepvfLDSTYTSTYLPLNMIIQVA 330
                 55333446679****************9999987788898877666677889999888777664442...3333234445******************* PP

                 HHHTTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGE..........EEESSSTTSEEEESEEECCTSSSEEEEHHHHTTEEEEEETTTTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 222 kaigakksesegeyvvdCdslsslpdisftiggakitvpvselv..........lkeeeseesqCilglvseeegdlwiLGdvFlrsayvvfdldnnrv 310
                  +iga ++es + ++v C+  ++ +++ ft+++++i+vp+++l+            + +++++ C+l + s++ + ++iLG  Fl+++y+  dld n++
  CCD24121.1 331 IQIGAMYVESLERWLVPCNIANQHATLDFTFQDVSIRVPLTDLLgttydsstntSMHFSTGDEACYLKIFSNQMTGYNILGRPFLKHVYMAVDLDGNNI 429
                 *****************************************99844322211111111233468999999***************************** PP

                 EEEEE CS
                 xxxxx RF
         Asp 311 glAea 315
                  +A+a
  CCD24121.1 430 AIAQA 434
                 ***86 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.6   8.8e-08   0.00079       1     103 [.      45     131 ..      45     175 .. 0.57
   2 ?   -0.1   0.0      0.11   9.7e+02     123     162 ..     476     515 ..     436     522 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 8.8e-08
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkaceasssaksgsssstceyeisygadgssssGvlatd 99 
                 Y+++i +Gtp q+  l++Dt   +tW+    ++    q+++           +  c s        ++s++  + + + +y++    d+s+ +G+ + d
  CCD24121.1  45 YYINITMGTPEQQQELMIDTSQPYTWLLSGSQD---LQCNR----------LNSGCLSGSLY--YVKESTSAICINPNRTYHMAF-IDQSEINGTHVID 127
                 9*************************9883322...11111..........22222222222..222333333334444455555.3555555555555 PP

      TAXi_N 100 tltl 103
                  + +
  CCD24121.1 128 MMNF 131
                 5555 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.11
      TAXi_N 123 snlgglaagadGilGLGrgklSlvsqlaskgslgnkFsyC 162
                 +   +  ++++G+l  ++g +  ++ l+ ++ +++ F+  
  CCD24121.1 476 TIATRRSSSSSGVLAISSGYIPYATSLNMSKVYTRLFAST 515
                 2333334457888888888888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.37
# Mc/sec: 4880.02
//
Query:       CCD24122.1  [L=3755]
Description: hypothetical protein NDAI_0C04630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-71  240.0   8.3    9.7e-71  238.8   8.3    1.7  1  FAT             FAT domain
    2.1e-47  162.0   0.6    2.1e-47  162.0   0.6    2.6  3  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
  ------ inclusion threshold ------
      0.046   13.7   3.2        6.5    6.8   0.0    3.8  3  U62_UL91        Functional domain of U62 and UL91 proteins
      0.094   13.0   0.3        1.6    9.2   0.1    3.0  2  HEAT            HEAT repeat
       0.11   12.4   0.0       0.39   10.6   0.0    2.1  1  FATC            FATC domain
       0.27   11.5   1.4         34    4.7   0.1    3.5  3  DUF2097         Uncharacterized protein conserved in archaea 
       0.95    9.4   6.0        1.8    8.5   0.2    3.7  3  PXA             PXA domain


Domain annotation for each model (and alignments):
>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.8   8.3   3.8e-74   9.7e-71       2     346 .]    2765    3114 ..    2764    3114 .. 0.95

  Alignments for each domain:
  == domain 1  score: 238.8 bits;  conditional E-value: 3.8e-74
                  CCTTCCCCTSSSGHH.....CCCCT....TSSSS--CCCHCCCCHH.....--CCHCHHCCCHCCCCCCCCCTS---SCCCCCHHHHHCCCCCHHHC CS
         FAT    2 plaaeaaWrlgqWds.....meeylsvlkkdspdkaffeailalhr.....nqfdeakeliekarqlldtelsalvgesynraygvlvrvQmlaEle 88  
                  +l +e+ Wr+ +W        ++  sv++ ++p++++fe++l+l++     +  +++++l+++++ql   ++++l+ + ++ +  +l+ +Q++ E+ 
  CCD24122.1 2765 DLLLECGWRVADWHAdrealEQSVKSVMDVPTPRRQMFETFLSLQQfadtgKGDQDVRRLCDEGIQLSLHKWASLPERYTSAHKWLLHGFQQYLEFL 2861
                  5899***********44443444445666*****************975554499***********************88888899*********** PP

                  HHCCHHCSS-.........---TTTTTTT----TTS-TTTGCCCTTTCCCCTCCCHCCCHC.....................HCCS-STTCCC..CC CS
         FAT   89 eiiqykqkls.........sseklksllktWrkRlpgcqdnvevwqdiltvRslvlspied.....................llkgvkaemwl..kf 153 
                  e+iq++++l+         ++++ k++++ Wr+Rlp+++d++++w+d++t+R++ ++ i+                      +++g+++ +w+  +f
  CCD24122.1 2862 EAIQIYNNLHtttvqnidaKAQEVKRVFQAWRDRLPNIWDDIDIWNDLVTWRQHTFQIINAaylplipalqqtnsnntinthVYRGYHELAWIinRF 2958
                  ************************************************************************************************* PP

                  CCCHCHHHHCCSTTHHCCCCCHCTT.....TT.TSSCCCHHHHHHHCCHHHHHSSCCHHHHCCTSSCCCSS-SS---............HH.HHCCC CS
         FAT  154 anlarksgrlslAekaLkelleedpeewlprappevvyaylKylwssgeqkealqkLreftsellekkeelqsgleaqkeptnleeftkll.arcyl 249 
                  a++ark+++ ++++++L+++                      y+++++e++ea++kLre++++++++++el++gl+++ ++tnl +f + + a++++
  CCD24122.1 2959 AHVARKHNMAEVCINQLTRI----------------------YTLPNIEIQEAFLKLREQAKCHYQNANELTTGLDVI-SNTNLVYFGTGQkAEFFT 3032
                  ********************......................************************************.****************** PP

                  TCCCCCCCCCCCT.S...-SSCCHHHHCCHHCTCCCHSTTCCCCHHHHHCCHHHHHHSSSS.S-TCCHHHHCCT..CCHHHHTTTS.STTTCHHHHH CS
         FAT  250 kkGewqealqkldwseekieeilqsysaateidpswykawhtwalfnfevvskeeeqkeeeepedlqeyvvpavkgflksislsse.nslqdtlRLL 345 
                  +kG+++++l+        +ee++q++++a++id +++kaw++w++fn++++s+e        p+++  ++ +a++++l+++ l+++ ++++ + R+L
  CCD24122.1 3033 LKGMFLSKLKA-------NEEANQAFATAVQIDLNLAKAWAQWGYFNDRRLSEE--------PNNIG-FASNAISCYLQAAGLYKSsKTRNLLCRIL 3113
                  ***********.......9***********************************........99998.*****************99*********9 PP

                  C CS
         FAT  346 t 346 
                  +
  CCD24122.1 3114 W 3114
                  8 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.7   6.9e+03     169     184 ..     521     550 ..     486     561 .. 0.61
   2 ?   -4.2   0.0       4.6   1.2e+04     213     242 ..     758     787 ..     745     790 .. 0.90
   3 !  162.0   0.6   8.4e-51   2.1e-47       2     248 ..    3413    3684 ..    3412    3686 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.7
                     S...........EEEESS...TTTCCTCSH CS
  PI3_PI4_kinase 169 g...........klihID...fGlilpdew 184
                     g           +++hID   f+ ++++++
      CCD24122.1 521 GaekidpdtymkEVFHIDlesFDPSFGNSK 550
                     044444444455788888777666666554 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 4.6
                     HHHHHHHHHHHHHHHHTHHHHHHHHHHHHH CS
  PI3_PI4_kinase 213 glfresceealealrrdqnlltrllkkavk 242
                      ++r+++e++ +a   ++n+l+rl+k+ v+
      CCD24122.1 758 RFLRKKLETLGNASVNESNVLIRLFKLSVM 787
                     578999999*****************9887 PP

  == domain 3  score: 162.0 bits;  conditional E-value: 8.4e-51
                      EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHH....... CS
  PI3_PI4_kinase    2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasves....... 87  
                      +a++ ++ +++r++e+++q+++l++++l k+ +++rr+++++ + +ipl+++++i+++  s++t+++++d+++ + g++p++   +       
      CCD24122.1 3413 FAVQSPAARHSRREERMFQFYRLLNKLLVKNVETRRRNVQFTVPIAIPLSPQVRIMNDSSSFTTLHQIYDKYCAQVGFDPDTLEGFisdqlri 3505
                      67788899*****************************************************************99888888887776666555 PP

                      ....HHHHCHCHCCHHHHHCC.....HHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEE CS
  PI3_PI4_kinase   88 ....lrvaldkkklkkekklk.....fekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgkl 171 
                          + +++d +               + ++++ p  +l ++F  k++++ee++ +rkqF++ ++ + +l++++ +++R++++i++d++sg +
      CCD24122.1 3506 ahdkSLPNPDLTL-------VnieilSSIQSMFLPNTVLRDHFATKFTEFEEFWLFRKQFTSNYSTFTFLSHMMTINNRTPSKIHIDEKSGDV 3591
                      5333333333333.......144467******************************************************************* PP

                      EESS.................TTTCCTCSHCSSSS-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCS CS
  PI3_PI4_kinase  172 ihID.................fGlilpdewkllpfpqekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglil 247 
                      ++++                 ++  lp + ++++ +qe +Pfrlt++++++i++++ eg+f   ++ + +al++++n l+++l ++++d++i+
      CCD24122.1 3592 FTLEmlpsrypferikpflknYDVNLPPDAPIFH-NQEPIPFRLTPNIQKLIGDTGLEGIFSVILFVISNALIEHENELNTYLTLFIRDEIIS 3683
                      ********************9*************.57******************************************************** PP

                      S CS
  PI3_PI4_kinase  248 w 248 
                      w
      CCD24122.1 3684 W 3684
                      9 PP

>> U62_UL91  Functional domain of U62 and UL91 proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0025       6.5       2      29 ..      77     104 ..      76     109 .. 0.94
   2 ?   -2.7   0.1       2.3   5.9e+03      24      43 ..     133     152 ..     126     156 .. 0.87
   3 ?    4.9   0.3    0.0098        25       2      28 ..    3237    3262 ..    3236    3271 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0025
    U62_UL91   2 nslLaelkddfeacetkeDlFkiiDkls 29 
                 ns+L+ l++  ++   +  lF i+D l 
  CCD24122.1  77 NSILNVLNRYLVNQPSESQLFYIVDTLT 104
                 9************************986 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.3
    U62_UL91  24 iiDklsknfnFlveqvEslP 43 
                 ++Dk+ + +  +++  E  P
  CCD24122.1 133 LVDKVEQFVKIIIQIYENSP 152
                 79***********9999888 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0098
    U62_UL91    2 nslLaelkddfeacetkeDlFkiiDkl 28  
                   sl+a++++ f++ +t eDlF++i+ l
  CCD24122.1 3237 ESLVAQINERFKN-NTDEDLFRLINVL 3262
                  699********98.69*******9866 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00062       1.6       4      28 ..    1308    1331 ..    1305    1333 .. 0.86
   2 ?   -0.5   0.0      0.84   2.2e+03       1      18 [.    3144    3162 ..    3144    3166 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00062
                  HHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT    4 lllkllsDpspeVReaAakaLgala 28  
                  ++++ ls p+++VRea+ ++L +l 
  CCD24122.1 1308 IVCE-LSNPNARVREACQLCLKTLH 1331
                  6788.69**************9985 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.84
                  HHHHHHHHHT-SSHH.HHH CS
        HEAT    1 llPlllkllsDpspe.VRe 18  
                  ++P ll+ ls+++++ VR+
  CCD24122.1 3144 FIPQLLTSLSHKEANmVRQ 3162
                  69*******9966555997 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015      0.39       4      32 .]    3727    3755 .]    3724    3755 .] 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
        FATC    4 veqQVdrLIkeATdpeNLaqmyiGWcPww 32  
                  ++q + +  + A++p+NL ++++ +++w+
  CCD24122.1 3727 TTQYILDMLSAAVNPRNLTKTDVSYMAWF 3755
                  56778888899*****************7 PP

>> DUF2097  Uncharacterized protein conserved in archaea (DUF2097)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.56   1.4e+03      48      74 ..     705     731 ..     699     737 .. 0.92
   2 ?    2.8   0.0     0.051   1.3e+02       6      76 ..    1830    1903 ..    1827    1913 .. 0.69
   3 ?    4.7   0.1     0.013        34      41      78 ..    2524    2561 ..    2515    2569 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.56
     DUF2097  48 ltlkldgelinqlvevdleeikddliE 74 
                 + ++ld+ ++n+++e ++  i d ++E
  CCD24122.1 705 MLMQLDSSTFNEILEAEIGFIYDRMLE 731
                 5689*********************99 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.051
     DUF2097    6 taeelieYiknnvkegdileisynrvfvp..Gevlsiek..keslrltlkldgelinqlvevdleeikddliElr 76  
                  + + l+ + kn++k+ d l++ ynr++++  G +l+  +   + +r +l   ++++ + +   l e+k+d+i ++
  CCD24122.1 1830 KTNSLLKFCKNDIKP-DWLDLIYNRIWTSknGMLLDCVDgeYDIYRFELLQLSDILIKWMPSVLSEMKKDIIKFN 1903
                  567789999999997.9*********9853377777766443445555444455555577777777777777665 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.013
     DUF2097   41 ekkeslrltlkldgelinqlvevdleeikddliElrHi 78  
                    ke+l   +k + ++i++l ++d  +i + l+El + 
  CCD24122.1 2524 AVKEDLSSFIKKHTDSISKLCDIDSSDILEPLVELFYQ 2561
                  44788999999************************985 PP

>> PXA  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.11   2.7e+02      35     125 ..      22     112 ..      10     146 .. 0.66
   2 ?   -2.2   0.1       1.3   3.4e+03      35      90 ..    1174    1263 ..    1165    1330 .. 0.55
   3 ?    8.5   0.2   0.00072       1.8       6      53 ..    3667    3718 ..    3664    3746 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.11
         PXA  35 tevrsilrsviralanrlkkvDlaqllltrlldlltshlrdyrqaeekvkskkaeeesdldlaakffalephp.alsavlrdieeskeaela 125
                 +e +si+  +   l+  +   D  +l++++l+++l ++l+ ++ + ++++++++  +s l++ +++  ++p   +l  ++++ +e+  +e++
  CCD24122.1  22 QEKHSIISGICDVLELIVLPDD-YALFIEKLVPVLLNQLKTIKISFDETSNENKLRNSILNVLNRYLVNQPSEsQLFYIVDTLTETLPKEND 112
                 4555555555555555554445.45999**************99999999988877777888888777666552443333334444444444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.3
         PXA   35 tevrsilrsviralanrlkk.vDlaqllltrlldlltshlrdyrqaeekvkskkae..................................e 90  
                  ++v++   ++++++ +r     +   l++++ll +l +++  ++  e+    k+                                    +
  CCD24122.1 1174 KDVQQSAIDAVKQIYERSALiYNEELLFTHSLLFDLMNQFMHFCYKES-FYDKNTGilgirtllqdikpplellkrlqpelvacflfvlkD 1263
                  667777777888888888642465666778888888888877765444.222222245555555555555555544444444444444431 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00072
         PXA    6 eelhellalilrdfVlsWYski.ss...deeFptevrsilrsviralanrlk 53  
                   el++ l l +rd + sWYs++  +   +++  + v+s +  ++r++++   
  CCD24122.1 3667 NELNTYLTLFIRDEIISWYSNLhRPiveNPQLREMVKSNVDLIVRKVSQLSH 3718
                  69*******************9633565888888888888888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       770  (0.0429472); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.43u 0.27s 00:00:01.70 Elapsed: 00:00:00.43
# Mc/sec: 25945.82
//
Query:       CCD24123.1  [L=777]
Description: hypothetical protein NDAI_0C04640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       937  (0.0522617); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5805.25
//
Query:       CCD24124.1  [L=871]
Description: hypothetical protein NDAI_0C04650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-138  463.8  89.3   4.7e-129  432.0  59.1    4.0  2  SBE2      SBE2, cell-wall formation
  ------ inclusion threshold ------
      0.059   12.5   0.1      0.096   11.8   0.1    1.3  1  DUF111    Protein of unknown function DUF111


Domain annotation for each model (and alignments):
>> SBE2  SBE2, cell-wall formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0  24.6   4.8e-09   4.3e-05      26     263 ..      15     254 ..       4     275 .. 0.54
   2 !  432.0  59.1  5.2e-133  4.7e-129     211     818 ..     268     869 ..     258     871 .] 0.80

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.8e-09
        SBE2  26 erpsvetklGrklagislsrdessstsakavGlg.ia.rrpsdnllasisdnldgkqmlssevnealpqppkveihqtrrerpisndsivtkssevfss 122
                 e+ s++ ++  + ++++l+   s s  +k + lg i+  rpsd +l   s + +++  +++ +  a       + h+  + rpis++si t+++++fss
  CCD24124.1  15 EEDSSNLTSPIEPTATTLN---SPSLPSKPLNLGrIGkNRPSDSVLLLSSSKIGARTNVTAAAAAAAAVTVPRHDHDYHNPRPISEESILTRTTDIFSS 110
                 5555555555555553333...344555555554344259****9999999999888887766554443333345899*******************99 PP

        SBE2 123 s.sddtqssassaetdeedeeeGid.kdldnlstnpsilsekaeesr...adgdsvsireksnnsvsestkdGsksa.lsksisvndtsaeksmnkark 215
                   ++++ ss+s  +++++ +++ +d  d++ ++   +++ +    s       +s+ ++ + + + s+ t++ s     s+  ++ + s+ +  n +r 
  CCD24124.1 111 DtNSESFSSISNELENTTYDDQSMDnIDMHVVNQLEATINNMEFLSInndNGDKSMDMDMNMDMDLSFGTQSFSTIGpISRNSTIRQQSSLIHEN-TRY 208
                 74566667777666655555554441466666666677776644443110333456667777777777777665332122222233333333333.444 PP

        SBE2 216 syqeqfsskksqssllnlrqrsraksdkrsstlynlsnstsai.vpnak 263
                 sy+ +++s++      n+++ + +  +  +s     s s+ a  +p++ 
  CCD24124.1 209 SYKSNITSRQN---SINSKYSTTSSASASASASTSTSASAFAFaLPSSA 254
                 44444443332...23444444433333333333333333222444433 PP

  == domain 2  score: 432.0 bits;  conditional E-value: 5.2e-133
        SBE2 211 nkarksyqeqfsskksqssllnlrqrsraksdkrs.....stlynlsnstsai...........vpnaktlkkkaltpsqryrlrkeqsetalrnsikr 293
                 n   +  q +f++++ +    n r++s+++++++       tly l  s s i           + n  t k   +tpsq++rlrkeq+ ++lr+ ik 
  CCD24124.1 268 NSYSQASQTKFQNNRNK---NNNRKKSNSNNNNNNnnntvKTLYPLKHSHSMIinnslpmydnnIDN-TTNKSSFMTPSQKFRLRKEQKGKELRKIIKE 362
                 33334445556555442...34444444443333222334899999999999988887777776666.7788899************************ PP

        SBE2 294 keklydeqeqi..lelqeGdiddslifnvpmaslstnsflasakdkdsarsasskdlerftggeytkqnhrysnvsfastissaslldfkemptspipG 390
                 ke++y+e e+i  le+ +Gdi+dsli+n+p as+st+sf++  +++++++ a+++  +r                     +++ s    + + t+ ipG
  CCD24124.1 363 KEQFYEESEKIsdLEIIDGDINDSLIWNIPTASISTTSFISDNNNNKNKTRAKKNL-NR---------------------PLMHSQ---FSLSTTSIPG 436
                 *********98557889**********************97655544444333332.22.....................223332...3467889*** PP

        SBE2 391 vnkvsdlqfiqdttkslssvylhssnrlsrsklsertksadvlpielkeasekGmedlilvsenkldvvshsrpswlppkdpeekklherqiskslsva 489
                 +n+vsd q+ q+tt++lss+y++ s+ +++skl +r  sad lp+ +k as+ G+edl+lvs++kl  +s srpswlppkdp e  +h+  is  l   
  CCD24124.1 437 INSVSDTQYFQETTNDLSSLYVNDSKTITKSKLQKRHYSADHLPLSMKHASDSGLEDLLLVSNDKLKFISSSRPSWLPPKDPIEMTFHNLCISENLNRL 535
                 *************************************************************************************************** PP

        SBE2 490 sldqleknkdreeklikdetnrqkyvllldrdi........trnsslqslkkliwetplsaetrssiydevlqsevrliteryiesfeeilkllnklel 580
                 s dql+ n+ ++e l  d+ n   y  ll  d           +  l++lkk+iw+t l +++ ++++ + ++    +  e+  +sfe++l+llnk+++
  CCD24124.1 536 SNDQLKLNQANDELLKIDQLNISTYERLLKNDNynhhhhhhHHHHDLKTLKKIIWQTKLPNNLITNLFLMTFK---NVEEEHSFDSFENVLRLLNKMKF 631
                 *************************988876541111111134578**************9998877766554...45567889*************** PP

        SBE2 581 pknkeieieklieasiknkvsGk.qdisd....dlllllklksissqGivpGdellfhhllv.......des....fenlslnevwelvnliqltcfnd 663
                 p +ke +i++lie++i+nk+sG  q isd    +l+lll+lksis+ G+v Gd+llf+h+l+       d+     ++   l  +w++vn iq+tcfn+
  CCD24124.1 632 PTDKEFQINQLIENNINNKLSGYiQPISDqlhsNLMLLLQLKSISQHGLVIGDDLLFYHFLLlihnnnnDDGqeqeLDVNDLSTIWNIVNKIQVTCFNE 730
                 **********************6355776222268************************9853443332222111122345789*************** PP

        SBE2 664 ltkekfdakilekkGvvakylsqddsfkdefnteclnsttwwnilervdhdlfmwildiivvansqsfknspinkekfknkdweyyrskkvvinykili 762
                   ke++d+ +l+k   ++  ++++ +fk+e+n++cln +t wn++er+dhdlf+wi+ ii +     ++n                +sk+   nyki i
  CCD24124.1 731 HYKEQYDINVLKKAQSLS--FLNKPEFKNELNSNCLNFNTIWNVFERLDHDLFLWIISIIFTLT--MYQNL---------------KSKR-KSNYKISI 809
                 ***********9887654..456789**********************************9874..45554...............2222.259***** PP

        SBE2 763 sfalnvllnyhfGfndlksladvedkrfcipvsl...dnlldad.einavfikkwkhyyk 818
                 sf++n+l+nyhfGfnd++ l d+ed +fcip+++    +  d++ + n  fikkw+hyy 
  CCD24124.1 810 SFTINILINYHFGFNDFQHLNDLEDANFCIPMPIpitRDSNDEQlNSNRTFIKKWLHYYE 869
                 *******************************9984332233332245779*********6 PP

>> DUF111  Protein of unknown function DUF111
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   1.1e-05     0.096      28      98 ..     528     610 ..     442     615 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.1e-05
      DUF111  28 leealeklgleeveleiekvkksgisatkvdve.............eeehehehrslaeieeiieaaslsekv.kekalaiferl 98 
                 + e+l++l+ ++++l+  +++  +i+  ++  +             +++h+h+h++l+++++ii +++l++++ ++  l +f+++
  CCD24124.1 528 ISENLNRLSNDQLKLNQANDELLKIDQLNI--StyerllkndnynhHHHHHHHHHDLKTLKKIIWQTKLPNNLiTNLFLMTFKNV 610
                 455666666555555555554444444444..355999999999988889999999*************9875144556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1997  (0.111384); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 5521.98
//
Query:       CCD24125.1  [L=322]
Description: hypothetical protein NDAI_0C04660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-35  120.0  11.5    2.7e-17   62.3   1.2    2.7  2  PQ-loop      PQ loop repeat
    0.00055   20.1   2.7     0.0029   17.7   2.7    1.9  1  ECF_trnsprt  ECF transporter, substrate-specific component
  ------ inclusion threshold ------
      0.073   13.1   6.0       0.65   10.1   0.4    3.2  3  MtN3_slv     Sugar efflux transporter for intercellular excha


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   3.2   5.4e-21   3.2e-17       1      59 [.      15      73 ..      15      75 .. 0.96
   2 !   62.3   1.2   4.6e-21   2.7e-17       1      56 [.     190     245 ..     190     248 .. 0.96

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 5.4e-21
     PQ-loop  1 lseilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfpp 59
                +s+i g++s++ +++s++PQii++y  k + GlS++fll wl+Gdi+sl++ il++++ 
  CCD24125.1 15 ISNINGSLSFISSFISLLPQIIETYHDKTVIGLSPYFLLAWLCGDITSLIGAILTDQLS 73
                799***************************************************99875 PP

  == domain 2  score: 62.3 bits;  conditional E-value: 4.6e-21
     PQ-loop   1 lseilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilng 56 
                 +++il+++++ +++ ++iPQ+++NykrkSt+GlS++ +   llG+i++ +++++++
  CCD24125.1 190 IGTILSWMGASFYVGARIPQLYRNYKRKSTDGLSPFLFATTLLGNITYNVSIFTSC 245
                 679**************************************************986 PP

>> ECF_trnsprt  ECF transporter, substrate-specific component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   2.7   4.9e-07    0.0029      11     160 ..      21     277 ..      15     286 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4.9e-07
                  HHHHHHHH...H.HEEE.STSEEESHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCHT-SSTTHHHHHHHHHHHHCHHHHHHHHHHCCCHTTHHHH.. CS
  ECF_trnsprt  11 Aisivlsl...l.gyiplpnikitiihipvllggllfGpikGailgiitsvlkailtggtgalssfvpiaflsriligliagllykkgkkknlkei.. 102
                   +s+++s+   l  +i++   k+ i   p +l ++l+G i  +i +i+t+ l++ +      ++    i+fl + l++   ++ y +++k +l +   
   CCD24125.1  21 SLSFISSFislLpQIIETYHDKTVIGLSPYFLLAWLCGDITSLIGAILTDQLSFQI------IL---AIYFLFNDLFVCGQYYYYGIIHKNKLATMsh 109
                  6899999654433555555449********************************99......33...79*********99999999888888877799 PP

                  .................................................................................................. CS
  ECF_trnsprt 103 .................................................................................................. 102
                                                                                                                    
   CCD24125.1 110 epkpllttididmdnntnsntngdddhssnsngleairsrdssqrraalitaltiansinsaeaqslpppssspvlrnnrigtilswmgasfyvgari 207
                  99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                  ..............HHHHHHH.HCCCCCHHHHHHHCCCHHHHS.............--HHHHHHHHHCCTTCC CS
  ECF_trnsprt 103 ..............vvsfila.gvlgtivatllvlliilplylklktakaiaiagkallaailgpiivkglie 160
                                + +f++a ++lg+i+  ++  ++  +l+ ++ ++ +i+  +  ++++   + i+++li 
   CCD24125.1 208 pqlyrnykrkstdgLSPFLFAtTLLGNITYNVSIFTSCNVLM-NDDKIGFIK--NEMPFIFGSAGTIIFDLIY 277
                  999999999999995555444156778888887777777777.454443333..3444555555566666665 PP

>> MtN3_slv  Sugar efflux transporter for intercellular exchange
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       0.3   1.8e+03      11      44 ..      24      56 ..      17      85 .. 0.63
   2 ?    4.5   0.2    0.0061        37      41      64 ..      85     108 ..      69     120 .. 0.76
   3 ?   10.1   0.4   0.00011      0.65      16      49 ..     204     237 ..     190     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.3
    MtN3_slv 11 tvavFlsPlsilrkiikkksveelsfllflagll 44
                 ++ F s l+++ + +  k+v +ls    la  l
  CCD24125.1 24 FISSFISLLPQIIETYHDKTVIGLSPYFLLAW-L 56
                56667777777777777777777765544433.3 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0061
    MtN3_slv  41 agllsallWllYGllkkdaliiiv 64 
                   l+++ ++ +YG+  k++l ++ 
  CCD24125.1  85 NDLFVCGQYYYYGIIHKNKLATMS 108
                 45789**********999976665 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00011
    MtN3_slv  16 lsPlsilrkiikkksveelsfllflagllsallW 49 
                 ++ +++l++ +k+ks+++ls  lf ++ll+++++
  CCD24125.1 204 GARIPQLYRNYKRKSTDGLSPFLFATTLLGNITY 237
                 5778999**********************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2265.48
//
Query:       CCD24126.1  [L=346]
Description: hypothetical protein NDAI_0C04670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-49  166.9   0.1    6.6e-49  166.7   0.1    1.0  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    6.2e-20   71.6   0.3      1e-15   58.1   0.1    3.3  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    3.6e-13   49.4   0.0    2.3e-11   43.5   0.0    2.1  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.7e-05   24.2   0.0    0.00012   21.4   0.0    2.2  2  Thi4           Thi4 family
    6.4e-05   23.3   0.0      0.028   14.8   0.0    2.3  2  NAD_binding_7  Putative NAD(P)-binding
    6.9e-05   22.1   1.8       0.29   10.2   0.0    3.5  4  GIDA           Glucose inhibited division protein A
    0.00033   20.8   0.1      0.018   15.3   0.0    2.5  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0015   18.6   0.1        1.1    9.3   0.0    2.6  3  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
     0.0084   15.3   0.1        5.4    6.1   0.0    3.6  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
     0.0095   15.2   0.0        2.9    7.0   0.0    2.2  2  FAD_binding_3  FAD binding domain
  ------ inclusion threshold ------
      0.059   12.4   2.7          2    7.4   0.3    2.5  3  FAD_binding_2  FAD binding domain


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7   0.1     4e-52   6.6e-49       2     293 ..      31     330 ..      30     331 .. 0.91

  Alignments for each domain:
  == domain 1  score: 166.7 bits;  conditional E-value: 4e-52
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH..HHHHCHHHH.CCCCHC...CTCEEEEESCEEEEETEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx.xxxxxx...xxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias..evvkklnqg.ielllg...eevvkidpgkkkvklekk 90 
                  +v ++G+GpA+++aa++la+a++k tl+e   ++g   +g+   ++++++++++++ ++  e ++k++++ i++ ++   e++ kid   + +kl  +
   CCD24126.1  31 KVTIVGSGPAAHTAAIYLARAEMKPTLFEgmlANGIAAGGQLTTTTEIENFPGFPKALTgsELMDKMREQsIRFGTDiitETISKIDLSTRPFKLWSE 128
                  799****************************99**********************9999**5555555554665555554479************999 PP

                  EC.TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSSTTS-HHHHH CS
                  xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  91 ke.gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvElAaalaklgkevtlveardrllraldkelsa 187
                   + + e +++ d++v AtG+s+++l++pG+ ++++k++++++ +++     ++k ++vvGgG  ++E A++l+k+g++v ++ + d l       +s 
   CCD24126.1 129 FNeDGEPTMTSDAIVFATGASAKRLHLPGEDQYWQKGISACAVCDGAVPIFRNKPLAVVGGGDSACEEAQFLTKYGSKVFMIVRKDYLR------AST 220
                  87456668999*************************************************************************99997......9** PP

                  HHHHHHHHT.TEEEEESCEEEEEEETTE.....EEE.EEETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTEEE--TTS.BESSTTEEE-GGG CS
                  xxxxxxxxx.xxxxxxxxxxxxxxxxxx.....xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Pyr_redox_2 188 aleealeke.Gvevklgtsvkeidgnge.....kle.vvledgeeidadlvvvavGvrpstelleeklglelderggivvdefl.rtnvpgiyaiGDv 277
                  +++++ ek+ ++e+  +t+  e++g+g+     +++ v++++++e+++  +++a+G +p t+++  + ++ +de+g+i++ + +  t+ pg +a+GDv
   CCD24126.1 221 IMQKRAEKNdKIEILYNTVSLEAIGDGKllnalRIKnVKTNEESELQVNGLFYAIGHTPATKIV--QGQVDTDEAGYIKTVPGStLTSAPGFFAAGDV 316
                  *********9******************999777779************************995..9***********7777662489********** PP

                  CTECCSS--HHHHHHH CS
                  xxxxxxxxxxxxxxxx RF
  Pyr_redox_2 278 aggkggpelaqaAvqq 293
                  +  + ++++a+++  +
   CCD24126.1 317 Q--DARYRQAVTSAGS 330
                  *..8888888887665 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0035       5.8       1      29 [.      31      59 ..      31      63 .. 0.94
   2 ?    2.1   0.0      0.17   2.8e+02      42      67 ..      89     114 ..      75     120 .. 0.82
   3 !   58.1   0.1   6.2e-19     1e-15       2      78 ..     184     255 ..     183     262 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0035
                EEEEECSSHHHHHHHHHHHHTTSEEEEEE CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgkkVtvve 29
                kv++vG+G  +  +A +la+   k t++e
  CCD24126.1 31 KVTIVGSGPAAHTAAIYLARAEMKPTLFE 59
                699**********************9998 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHTTEEEECSEEEEEEE CS
   Pyr_redox  42 askilqeklekngievllntkveeie 67 
                 ++++l++k++++ i++ ++  +e i 
  CCD24126.1  89 TGSELMDKMREQSIRFGTDIITETIS 114
                 57899*******99998877777665 PP

  == domain 3  score: 58.1 bits;  conditional E-value: 6.2e-19
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT.TEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekn.gievllntkveeiegsedgvesvkl 78 
                 ++vvGgG++++E+A++l+++g+kV +++r+d l+      as+i+q++ ekn +ie+l+nt+  e  g+++ ++++++
  CCD24126.1 184 LAVVGGGDSACEEAQFLTKYGSKVFMIVRKDYLR------ASTIMQKRAEKNdKIEILYNTVSLEAIGDGKLLNALRI 255
                 68********************************......**********************9999999875666665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.015        24     158     189 ..      23      54 ..       7      61 .. 0.79
   2 !   43.5   0.0   1.4e-14   2.3e-11     122     305 .]     136     314 ..      79     314 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.015
  Pyr_redox_3 158 efhkyagqkvvViGgknSavDaAlelvrkgae 189
                  +++ +a+ kv+++G +  a  aA+ l+r++++
   CCD24126.1  23 SLQRMAHSKVTIVGSGPAAHTAAIYLARAEMK 54 
                  56778889999999999999999999988766 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 1.4e-14
  Pyr_redox_3 122 tyeAkkviiAtGefdkPnklnipGeek...lvkhyskvk..efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrgseiekeesdpsyslkpdi 214
                  t++++ ++ AtG     ++l+ pGe++   + +    v   ++  ++++ ++V+Gg++Sa++ A  l ++g++V +++r++ ++++    +   ++  
   CCD24126.1 136 TMTSDAIVFATGA--SAKRLHLPGEDQywqKGISACAVCdgAVPIFRNKPLAVVGGGDSACEEAQFLTKYGSKVFMIVRKDYLRASTIMQK---RAEK 228
                  8999********9..9999*******843334444444322455678999*******************************9988864444...5666 PP

  Pyr_redox_3 215 enrleelvkeekikvlfnaevkeikekeeeykvktedgkkvevkddvvlatGykpdlsflkkslfeldedgrpvlteeteetnvpglflaG 305
                  ++++e l+++ +++++ + ++ +  +     +vkt+++++++v +  ++a+G +p +++++  ++++de g+++  +    t  pg f aG
   CCD24126.1 229 NDKIEILYNTVSLEAIGDGKLLNALR---IKNVKTNEESELQV-NGLFYAIGHTPATKIVQ-GQVDTDEAGYIKTVPGSTLTSAPGFFAAG 314
                  66666666665677777755444333...33678888888887.778*************9.9999**********************999 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.3e-08   0.00012      12      63 ..      24      72 ..      18      80 .. 0.88
   2 ?   -0.8   0.0      0.44   7.2e+02      20      49 ..     184     212 ..     179     216 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 7.3e-08
                HHHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTT CS
        Thi4 12 llkyaesDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGql 63
                l+ +a s v ivG+G++  taa yla++ ++k +++e  ++ G  +  GGql
  CCD24126.1 24 LQRMAHSKVTIVGSGPAAHTAAIYLARA-EMKPTLFEGMLANG--IAAGGQL 72
                678999**********************.**********9975..6778877 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.44
                 EEEE--SHHHHHHHHHHHHCTTS-EEEEES CS
        Thi4  20 vvivGaGssGLtaayylakkpdlkvailer 49 
                 +++vG+G s    a+ l+k  + kv ++ r
  CCD24126.1 184 LAVVGGGDSACEEAQFLTKY-GSKVFMIVR 212
                 689**************999.999988765 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0069        11       5      38 ..      27      60 ..      24     147 .. 0.82
   2 !   14.8   0.0   1.7e-05     0.028       5      41 ..     179     219 ..     178     289 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0069
  NAD_binding_7  5 lkgkkvlvvGgGevAarkvrklleagakvtvvap 38
                   +   kv +vG G+ A + +  l++a+ k t+   
     CCD24126.1 27 MAHSKVTIVGSGPAAHTAAIYLARAEMKPTLFEG 60
                   66789*******************9999998655 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.7e-05
  NAD_binding_7   5 lkgkkvlvvGgGevAarkvrklleagakvtvvapev....k 41 
                    +++k   vvGgG+ A + ++ l ++g kv ++  +     +
     CCD24126.1 179 FRNKPLAVVGGGDSACEEAQFLTKYGSKVFMIVRKDylraS 219
                    689999***********************999888423321 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00067       1.1       1      29 [.      31      63 ..      31     100 .. 0.83
   2 ?   -1.6   0.0      0.67   1.1e+03     134     154 ..     132     152 ..     105     167 .. 0.63
   3 !   10.2   0.0   0.00018      0.29       3      75 ..     185     269 ..     183     296 .. 0.81
   4 ?    0.7   0.1      0.14   2.2e+02     354     390 ..     306     344 ..     300     346 .] 0.75

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00067
                CEEEE-SSHHHHHHHHHHHHTT--EEEE....E CS
        GIDA  1 dviViGgGhAGceAAlaaarlGakvlLi....t 29
                +v+++G G A   AA+ +ar+ +k +L+    +
  CCD24126.1 31 KVTIVGSGPAAHTAAIYLARAEMKPTLFegmlA 63
                699*********************999954440 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.67
                 TTS-EEEECEEEE--TT-BT- CS
        GIDA 134 edgetikakavviatGtflkg 154
                 + + t++++a+v atG+  k 
  CCD24126.1 132 DGEPTMTSDAIVFATGASAKR 152
                 445578889*******93333 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00018
                 EEE-SSHHHHHHHHHHHHTT--EEEE...............ES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHHHHHHEEEEE CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLi...............thkldtiaelsCnpsiggiakgllvrEidalggliikaadkagiqfr 75 
                  V+GgG + ce A  + + G kv +i               ++k d+i  l    s+ +i+ g+l + ++      +k+ +++++q++
  CCD24126.1 185 AVVGGGDSACEEAQFLTKYGSKVFMIvrkdylrastimqkrAEKNDKIEILYNTVSLEAIGDGKLLNALRI---KNVKTNEESELQVN 269
                 7**********************************999999999999999988889999999999887776...44555555555555 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.14
                 SSBTEEE-CGGGTB-SHHHH...HHHHHHHHHHHHHHHCT CS
        GIDA 354 kvkgLflAGqinGteGYeEa...aaqGllAGinaarkakg 390
                 + +g f+AG++     Y  a   a++G++A++ a +++ +
  CCD24126.1 306 SAPGFFAAGDVQDAR-YRQAvtsAGSGCMAALDAEKYVSE 344
                 568999999999987.7655111669******99988765 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05     0.018       1      27 [.      34      60 ..      34      92 .. 0.79
   2 ?    3.0   0.0     0.072   1.2e+02       1      24 [.     186     209 ..     186     223 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
                   EE--SHHHHHHHHHHHCCTEEEEEE-S CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllek 27
                   IvG+G ++ +aA +La+a  + +l+e 
     CCD24126.1 34 IVGSGPAAHTAAIYLARAEMKPTLFEG 60
                   9************************94 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.072
                    EE--SHHHHHHHHHHHCCTEEEEE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvll 24 
                    +vG+G s++  A++L+k+g +v  
     CCD24126.1 186 VVGGGDSACEEAQFLTKYGSKVFM 209
                    8*****************998855 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0049         8       7      37 ..      24      54 ..      20      58 .. 0.88
   2 ?   -4.1   0.0       9.1   1.5e+04      75      88 ..     138     151 ..     133     154 .. 0.76
   3 !    9.3   0.0   0.00071       1.1      11      60 ..     180     229 ..     172     243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0049
                  HS..TT-EEEEES-SHHHHHHHHHHHCCT-C CS
  Shikimate_DH  7 leslkekkvlliGaGemaelvakhLlakgvk 37
                  l++++++kv+++G G  a+ +a +L+++++k
    CCD24126.1 24 LQRMAHSKVTIVGSGPAAHTAAIYLARAEMK 54
                  567899*******************998876 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 9.1
                   T-SEEEE-SSSSS- CS
  Shikimate_DH  75 eadvvisataseep 88 
                    +d ++ at+++  
    CCD24126.1 138 TSDAIVFATGASAK 151
                   57999999998765 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.00071
                   TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT.ET CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelkgee 60 
                   ++k   ++G G  a + a+ L + g k  +++  ++ ra+++ ++  +++
    CCD24126.1 180 RNKPLAVVGGGDSACEEAQFLTKYGSKVFMIVRKDYLRASTIMQKRAEKN 229
                   567789************************************99986663 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.037        60     187     212 ..      25      50 ..       5      59 .. 0.75
   2 !    6.1   0.0    0.0033       5.4     189     225 ..     179     213 ..      96     220 .. 0.64
   3 ?    1.0   0.0      0.11   1.9e+02     286     340 ..     223     277 ..     218     279 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.037
  K_oxygenase 187 ellakkriaVvGsGqSaaeifedllr 212
                  ++ a+ ++++vGsG  a   +  l+r
   CCD24126.1  25 QRMAHSKVTIVGSGPAAHTAAIYLAR 50 
                  4678899*******988766666655 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0033
  K_oxygenase 189 lakkriaVvGsGqSaaeifedllrrqkkvelklvtrs 225
                   ++k +aVvG+G Sa e ++ l++  +  ++ +++r+
   CCD24126.1 179 FRNKPLAVVGGGDSACEEAQFLTKYGS--KVFMIVRK 213
                  5678899********998888776655..55555555 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.11
  K_oxygenase 286 eqkvkgeerlrllpnr.evesaeaegkgeveltlrneesgeeetlevdavvlATGY 340
                  +++ ++++++++l n+ ++e++    k    l ++n +++ee++l+v+ +++A G 
   CCD24126.1 223 QKRAEKNDKIEILYNTvSLEAIGDG-KLLNALRIKNVKTNEESELQVNGLFYAIGH 277
                  5556666666666655144444444.457789999999999999999999999886 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0018       2.9       3      23 ..      31      51 ..      29      63 .. 0.88
   2 !    6.1   0.0    0.0035       5.8       5      34 ..     185     214 ..     182     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0018
                   EEEEE--SHHHHHHHHHHHHT CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLsea 23
                   +V IVG+Gpa  ++a  L++a
     CCD24126.1 31 KVTIVGSGPAAHTAAIYLARA 51
                   79****************997 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0035
                    EEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekrs 34 
                    ++VG+G +    a++L+++G +v ++ + +
     CCD24126.1 185 AVVGGGDSACEEAQFLTKYGSKVFMIVRKD 214
                    69********************99998754 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3    0.0012         2       2      33 ..      32      63 ..      31      79 .. 0.84
   2 ?   -2.8   0.0       1.6   2.5e+03       3      35 ..     185     217 ..     184     222 .. 0.82
   3 ?    4.4   0.1    0.0099        16     357     414 ..     268     329 ..     248     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0012
                   EEEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2  2 viViGsGlAGLaAAleaaeaGlkvavvekeqe 33
                   v ++GsG A  +AA+ +a+a  k ++ e + +
     CCD24126.1 32 VTIVGSGPAAHTAAIYLARAEMKPTLFEGMLA 63
                   679*****************999888887766 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.6
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSSGGG CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeqefg 35 
                     V+G+G + +  A  +++ G kv ++  +++ +
     CCD24126.1 185 AVVGGGDSACEEAQFLTKYGSKVFMIVRKDYLR 217
                    69****999999999999999998887776665 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0099
                    E........EEEEEEEES-EEEBETTSBE...STTEEESSBTEEE-STCEESSSSTTS--TT CS
  FAD_binding_2 357 p.gpfyavkvvpaqhytmgGvetdengrv...ldadgqpipGLYAaGevaaggvhganrlgG 414
                      g fya+  +pa+   +g v tde g      +++ +  pG +AaG v  + +  a   +G
     CCD24126.1 268 VnGLFYAIGHTPATKIVQGQVDTDEAGYIktvPGSTLTSAPGFFAAGDVQDARYRQAVTSAG 329
                    157899999*****************99866678888889********98777777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.50u 0.31s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2382.98
//
Query:       CCD24127.1  [L=716]
Description: hypothetical protein NDAI_0C04680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.1e-38  130.6   0.1    1.3e-37  129.2   0.0    1.7  2  DEAD        DEAD/DEAH box helicase
    2.2e-20   73.1   0.0    1.1e-19   70.8   0.0    2.2  2  Helicase_C  Helicase conserved C-terminal domain
    2.8e-06   27.5   0.0    6.4e-06   26.3   0.0    1.6  1  ResIII      Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.0   2.2e-41   1.3e-37       2     174 ..     186     369 ..     185     371 .. 0.90
   2 ?   -2.2   0.0      0.52   3.1e+03      43      90 ..     424     470 ..     407     487 .. 0.68

  Alignments for each domain:
  == domain 1  score: 129.2 bits;  conditional E-value: 2.2e-41
                 HHHHHHHHHHH...TTCEEEEEESTTSSHHHHHHHHHHHHHHHS..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.ST...SEEEEEETTSSHHHHH CS
                 xxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx...xxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplil...gggdvlvaaeTGsGKTlaflipvlqivyet..kgktgpkalivePtreLaeqtlnnlkkfkky.id...lrvlliiggvaardql 91 
                 ++Q+++i+ il   +++dv+++a+TG+GKT aflip++q++++t  +++   k++iv+Ptr La q+  ++kk+ ++ ++     +++++gg++    +
  CCD24127.1 186 PVQQRTIKPILsstTNDDVIARAKTGTGKTFAFLIPMFQHLINTqlDSRYMVKCVIVAPTRDLALQIEAEVKKIHDHnYGlkkFGCVSLVGGTNFGMAM 284
                 89*********877779***************************9989999*************************65554456667889******99* PP

                 HHHH.TTCSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  92 skld.ngvdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                 +++d  +++iv++tpgrl+d+l + g+  ++ v f +lDEadrll+ gf+++++ +   l++i+++ k + +++++SATl ++v+
  CCD24127.1 285 RRMDqIRPNIVIATPGRLIDVLqKYGNKFFKYVDFKILDEADRLLEIGFKEDLEFVSGYLNDINAKAKDHIRTLLFSATLDEKVQ 369
                 **97455*************994344444***************************************9999********98876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.52
                 TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  43 kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardq 90 
                   ++g k ++ +Pt + ++ +++ l+k + + dl vl + g+ ++r+ 
  CCD24127.1 424 VADPGYKGILFAPTVKFTRFIAKLLQKEFTN-DLPVLEFHGQLDQRRR 470
                 4677888899999988888888888777763.6667666555444444 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.99   5.9e+03      13      48 ..     233     276 ..     223     298 .. 0.58
   2 !   70.8   0.0   1.9e-23   1.1e-19       4     111 .]     417     526 ..     414     526 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.99
                 TTTTSEEEEEESSHH...HHHH.HHHHHHHT....TSTEEEEST CS
  Helicase_C  13 eeeggkilifvntid...rlek.vklllekk....gikvavlhg 48 
                 ++   k++i+++t+d   ++e  vk ++ ++    ++ ++ l g
  CCD24127.1 233 SRYMVKCVIVAPTRDlalQIEAeVKKIHDHNyglkKFGCVSLVG 276
                 55566889999999975533335455533334444455555555 PP

  == domain 2  score: 70.8 bits;  conditional E-value: 1.9e-23
                 HHHHHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   4 eallellkleeeggkilifvntidrlek.vklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 ++l + +     g+k ++f++t++     +kll++++  ++ v+ +hg+l q+ r   +++f+k e  +L++tdv++rG+d+p+v+ V ++++p ++ +
  CCD24127.1 417 DHLQKQI-VADPGYKGILFAPTVKFTRFiAKLLQKEFtnDLPVLEFHGQLDQRRRTNLVNNFKKMEKGLLVCTDVGARGMDFPNVKEVLQVGVPSELPN 514
                 5566665.6788999*********4433468886666889**********************999999******************************* PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 yi+riGRt+R g
  CCD24127.1 515 YIHRIGRTARSG 526
                 **********76 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.1e-09   6.4e-06       4     169 ..     184     364 ..     182     366 .. 0.65

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.1e-09
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.........-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee....kflflvprkslleqtleefkkflseayke...igkkvsgdkk 94 
                 l + Q++ i+ +l++     +  ++  + TGtGKT+   + + ++l + +  +    k+++++p+++l  q + e+kk+ + +y      + ++ g ++
  CCD24127.1 184 LSPVQQRTIKPILSST---TNDDVIARAKTGTGKTFAFlIPMFQHLINTQLDSrymvKCVIVAPTRDLALQIEAEVKKIHDHNYGLkkfGCVSLVGGTN 279
                 5688999999998665...6999*************985556666666544447777********************9998887433442222333333 PP

                 --..........-SEEEEEHHHHHHTH........HHHTTT-S...EEEEETGGGTTS....T......TTHH.H.HHT---SEEEEEESS- CS
      ResIII  95 ka...kekdstnkkilvttiqsldadseeeeeeseellrdrfd...viiiDEaHrlgak...k......swre.i.lekfkeavllglTATp 169
                      ++ d+   +i+++t  +l   +       +++++++f+   + i DEa rl +    +       + + i +++ ++   l ++AT+
  CCD24127.1 280 FGmamRRMDQIRPNIVIATPGRLIDVL-------QKYGNKFFKyvdFKILDEADRLLEIgfkEdlefvsGYLNdInAKAKDHIRTLLFSATL 364
                 334555666677788888888888777.......5555555554446688888888775443133333333333522222446667777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 5186.58
//
Query:       CCD24128.1  [L=714]
Description: hypothetical protein NDAI_0C04690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   13.9   0.1      0.082   12.8   0.1    1.6  1  CK2S      Casein Kinase 2 substrate
      0.063   12.2  38.6      0.096   11.6  38.6    1.3  1  DUF936    Plant protein of unknown function (DUF936)


Domain annotation for each model (and alignments):
>> CK2S  Casein Kinase 2 substrate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   9.1e-06     0.082      26     123 ..       4     121 ..       1     124 [. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.1e-06
        CK2S  26 lleslsnlaeqlqalqnvklygtplrdfpdlqerLrekqlealeevlakLrekleelqkvrdsleklvrdalq......................lyee 102
                 ++  l n+   lq+ + +++ +  + ++ +    L + q ++++  l++L+  l+++q+ ++ +e+ v+ + q                      l+++
  CCD24128.1   4 PIPQLVNISHALQSATIQQIRSD-VISY-NSSPVLSQDQSNKIDYYLQSLNFALQQFQNDNRHIENNVNGVTQadiqlynglksmysdylyqllnLKNN 100
                 56667777766666666665543.2233.44558999*******************************9999999999999999999999999999999 PP

        CK2S 103 kadklslkeliersavtPsla 123
                 k+ +++  +  + +++tPs+ 
  CCD24128.1 101 KSVSIPFTTTNTITPITPSIN 121
                 999999999999999999996 PP

>> DUF936  Plant protein of unknown function (DUF936)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6  38.6   1.1e-05     0.096     164     387 ..     284     516 ..     195     527 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.1e-05
      DUF936 164 erkkpalkrsksplss.........slvaakeekre.aiivksryrqpsslssrsipsSptslyerrvslspsserlsndvkqkskvkgleksskkkvg 252
                 +r +++l+ s+s+ ss         s+ +++++kr  + +  + ++ +ssl+s +  sS t    ++ sl+  + + + + k+k+k k++ +ss++k +
  CCD24128.1 284 NRSSNSLSSSSSSSSSgrlskklssSTASSRTKKRVaPTTTTTTTSTKSSLKSTKPTSS-TLATSKSSSLKVPKMKEKDKEKEKRKDKEKLSSSSSKKQ 381
                 22222233222222223333333315555555555553333444555666665554444.444456667766655555555555666666677777788 PP

      DUF936 253 llekaesklsets..snsvksissslkalRksWdesaevkkeeskekkak..kdkkselrsqsarrsssvssekssskddskkqtsakkskes.sssee 346
                 +++  +   ++ s  ++s k++ +s++  R++ ++ +  +  e   +++k  +d+k+++++ ++ +++++s +k+ ++d+ + +++++++++s  + e+
  CCD24128.1 382 TIVPHIHIANNHSpnKTSNKETTTSTEITRRNVNGAMTSQ--E---TNSKsiSDTKDNSNTDNQDTKKKISFSKYLKNDTVNDNNKRPHPSDSnDKIET 475
                 88888888877776677778889999**********9772..2...23333367777777777888999*****9998886666666666555455555 PP

      DUF936 347 keksskkessvekktse.ssektnttnlvkvalsskkwtdgs 387
                 ++ ss+++ss  + t++ ++ k+ + +lv++  + + +t+++
  CCD24128.1 476 SSSSSSSSSSLLSDTPTlKKRKSDV-KLVSILKNPQPSTEER 516
                 5555555566667777745555544.5888887777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2461  (0.137264); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.53
# Mc/sec: 4064.44
//
Query:       CCD24129.1  [L=252]
Description: hypothetical protein NDAI_0C04700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-61  205.1   0.0      8e-61  204.8   0.0    1.1  1  CoaE             Dephospho-CoA kinase
    4.7e-06   27.2   0.1    1.6e-05   25.5   0.1    1.9  1  AAA_18           AAA domain
    1.2e-05   25.6   0.0      3e-05   24.3   0.0    1.6  2  AAA_28           AAA domain
    2.4e-05   24.5   0.1    0.00023   21.3   0.0    2.1  2  SKI              Shikimate kinase
    9.4e-05   22.6   0.0    0.00019   21.6   0.0    1.6  1  AAA_33           AAA domain
    0.00019   21.8   0.1    0.00057   20.3   0.0    1.8  2  AAA_17           AAA domain
    0.00085   19.5   0.0     0.0016   18.6   0.0    1.5  1  Cytidylate_kin2  Cytidylate kinase-like family
     0.0029   17.5   0.2      0.052   13.4   0.0    2.1  2  dNK              Deoxynucleoside kinase
     0.0071   16.1   0.1      0.094   12.4   0.0    2.2  2  PRK              Phosphoribulokinase / Uridine kinase family
  ------ inclusion threshold ------
      0.015   15.4   0.1      0.033   14.3   0.0    1.6  2  tRNA_lig_kinase  tRNA ligase kinase domain
      0.016   15.3   0.0      0.035   14.2   0.0    1.6  1  AAA_14           AAA domain
      0.034   13.8   0.7      0.056   13.1   0.7    1.3  1  ALC              Phage ALC protein
      0.045   14.3   0.2       0.08   13.5   0.3    1.7  1  ABC_tran         ABC transporter
      0.049   13.4   0.0      0.088   12.5   0.0    1.7  1  Cytidylate_kin   Cytidylate kinase
      0.087   13.1   0.0       0.29   11.4   0.0    1.9  2  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> CoaE  Dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.8   0.0   6.7e-64     8e-61       1     178 [.       2     187 ..       2     188 .. 0.95

  Alignments for each domain:
  == domain 1  score: 204.8 bits;  conditional E-value: 6.7e-64
                 EEEEEEESTTSSHHHHHHHHHH.TT-EEEEHHHHHHHTTCCTHHHHHHHHHHHGGGC...B.TTSSE-HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH CS
        CoaE   1 livgltGgiasGKstvanlfad.lgvpivDaDlvArqvvepgsealkkiveeFgeei...ldedGeLdReaLrkkvFadpeekkaLnallhPlirreik 95 
                 l+vgltGgi++GKstv++++a+ + +p++DaD++Ar+vvepg+ a++kiv++F ++i   l +dG+L+R+ L+k+vF++p++ k+Ln+++hP++r+ i+
  CCD24129.1   2 LVVGLTGGIGCGKSTVSKRLAEnHDIPVIDADKIAREVVEPGQDAYNKIVKYFTDKIdylLLDDGHLNRAELGKWVFSHPNDLKILNNITHPAVRYSIF 100
                 69*******************99*******************************6544439999*********************************** PP

                 HHHHH--S...SEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHCC.TSTHHHHHHHHHHS--HHHHHHH-SEEEE-.SSHH CS
        CoaE  96 kelakles...kyvlldvPLLvEkqlekliervlvvdvelelqveRlvard.gvseeevkaiiaaQlseeerlaladvvldNdssla 178
                 k++ +++    ++v+ldvPLL+E++l+  + ++++v +e + q+eRl  r+  +++ee++++i++Q+s +er++ +d++l+N+++l+
  CCD24129.1 101 KNMGYYYVkgyRLVILDVPLLFEAKLDMFCGVTISVICERDIQIERLKIRNpVMTTEEIENRINSQMSMDERVKKSDYILQNNGTLT 187
                 ****99988899***************************************567899**************************9876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.1   1.3e-08   1.6e-05       1     114 [.       4     151 ..       4     168 .. 0.66

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 1.3e-08
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...................gvnlrdvakenglllevdpe............aldeskrldedkldklldaleens 68 
                 ++ltG +G+GK+t++k+L++ + +                     ++ ++++++  +l  d+              +++ +++  + ++ +        
  CCD24129.1   4 VGLTGGIGCGKSTVSKRLAENHDIpvidadkiarevvepgqdaYNKIVKYFTDKIDYLLLDDGhlnraelgkwvfSHPNDLKILNNITHPA-------- 94 
                 689*****************98777777777777777777776555555555555544444444444444544444444444444444444........ PP

      AAA_18  69 s..........aleegknlvidghlaeleseaakdikk.vvLtaspeelleRlekRg 114
                             + +g  lvi +++  +e   + + +  + + ++ ++ +eRl+ R+
  CCD24129.1  95 VrysifknmgyYYVKGYRLVILDVPLLFEAKLDMFCGVtISVICERDIQIERLKIRN 151
                 044445555888888888888888888887655554448***************998 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   2.5e-08     3e-05       4      52 ..       6      57 ..       3      79 .. 0.81
   2 ?   -2.2   0.0       3.7   4.4e+03     125     155 ..     170     200 ..     148     205 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 2.5e-08
      AAA_28  4 itGgestGKTtlleaLaar.gypvv..pEaareileeklakgedalpwvedl 52
                +tGg ++GK+t++++La++ ++pv+    +are++e +++  +++ ++  d+
  CCD24129.1  6 LTGGIGCGKSTVSKRLAENhDIPVIdaDKIAREVVEPGQDAYNKIVKYFTDK 57
                8****************754*****9999******99998877766654444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.7
      AAA_28 125 geRredleereaiderlrealrelgipviiv 155
                 +eR ++ ++  + +  l e+++++++ v+ +
  CCD24129.1 170 DERVKKSDYILQNNGTLTELYEQINNVVMKI 200
                 4566666777777777888888888887777 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.9e-07   0.00023       2      30 ..      11      39 ..      10      52 .. 0.91
   2 ?    0.8   0.0       0.4   4.8e+02      93     143 ..     138     185 ..     122     209 .. 0.54

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.9e-07
                TSSHHHHHHHHHHHHTSEEEEHHHHHHHH CS
         SKI  2 GaGKstvGkllAkklglefiDlDeliekr 30
                G+GKstv k+lA+  ++++iD+D++  ++
  CCD24129.1 11 GCGKSTVSKRLAENHDIPVIDADKIAREV 39
                9**********************987665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.4
                 --HHHHHHHHHHTTSSGGGCSCHHHHHHHHHHHHHHHHHCCSSCEEEECTS CS
         SKI  93 vsleellerlkadkeRPllqekskeeelleelaereplyeeaadvvvdese 143
                 ++++ ++erlk ++  P++++++  e++ +++++ ++  ++++ ++ ++ +
  CCD24129.1 138 CERDIQIERLKIRN--PVMTTEEI-ENRINSQMSMDERVKKSDYILQNNGT 185
                 55566666666554..35555555.33333333355555554333333322 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.6e-07   0.00019       2      46 ..       4      48 ..       3     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.6e-07
      AAA_33  2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqskt 46
                v l G  G+GKst+++rl+++++  +++ d++ r +++ +q+  +
  CCD24129.1  4 VGLTGGIGCGKSTVSKRLAENHDIPVIDADKIAREVVEPGQDAYN 48
                5567889***************************99987776655 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   4.7e-07   0.00057       1      38 [.       7      44 ..       7      66 .. 0.81
   2 ?   -1.6   0.1       2.9   3.4e+03      51      69 ..     149     167 ..     138     205 .. 0.52

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 4.7e-07
                EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTTT CS
      AAA_17  1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrgg 38
                +Gg G+GK+t++++l+e+ +++++ a  + re++++g+
  CCD24129.1  7 TGGIGCGKSTVSKRLAENHDIPVIDADKIAREVVEPGQ 44
                69***********************8777777766553 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.9
                 HHHHHHHHHHHHHHHHHHH CS
      AAA_17  51 leekkelqkeaaekiaeea 69 
                 ++    +++e++++i+ + 
  CCD24129.1 149 IRNPVMTTEEIENRINSQM 167
                 4444445555555554332 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.3e-06    0.0016       1      37 [.       3      40 ..       3      60 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.3e-06
  Cytidylate_kin2  1 iITIsreyGsgGetigeaLAekLglpfydr.eiieeva 37
                     ++ +++  G+g++t+ ++LAe++ +p++d  +i +ev+
       CCD24129.1  3 VVGLTGGIGCGKSTVSKRLAENHDIPVIDAdKIAREVV 40
                     5678899***********************55555554 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.3e-05     0.052       4      28 ..       7      31 ..       4      63 .. 0.77
   2 ?    1.9   0.1      0.14   1.7e+02     132     173 ..     155     196 ..     153     215 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.3e-05
                EESTTSSHHHHHHHHHCCSTCEEEE CS
         dNK  4 eGnIgaGKstlvklLskklgvkvfe 28
                 G Ig+GKst+ k+L+++ +++v+ 
  CCD24129.1  7 TGGIGCGKSTVSKRLAENHDIPVID 31
                799***************9988875 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.14
                 -HHHHHHHHHHCTTCCCTTS-HHHHHHHHHHHHHHHTSGGCS CS
         dNK 132 sletclerikkRgreeekkieldYlekLhekyeewlkklnev 173
                 ++e++++ri+ +   +e   + dY+ + +    e ++++n+v
  CCD24129.1 155 TTEEIENRINSQMSMDERVKKSDYILQNNGTLTELYEQINNV 196
                 68999************9999999876554444444444443 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   7.9e-05     0.094       1      33 [.       3      35 ..       3      57 .. 0.80
   2 ?    1.4   0.0      0.19   2.2e+02      38      80 ..     153     195 ..     132     201 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.9e-05
         PRK  1 vIgvagsSGaGkttvarklekifgrekvkaaei 33
                v+g++g  G+Gk+tv+++l +      + a +i
  CCD24129.1  3 VVGLTGGIGCGKSTVSKRLAENHDIPVIDADKI 35
                79*****************98877666665555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.19
         PRK  38 flrldraekdleleerkrakekevsflspeandfdllyevlke 80 
                 +++++++e++++++   ++  k+ ++   ++  + +lye++ +
  CCD24129.1 153 VMTTEEIENRINSQMSMDERVKKSDYILQNNGTLTELYEQINN 195
                 5788899999999999999999999999999999999999976 PP

>> tRNA_lig_kinase  tRNA ligase kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   2.7e-05     0.033       7      61 ..       9      64 ..       2      95 .. 0.77
   2 ?   -2.1   0.1         3   3.6e+03      18      18 ..     185     185 ..     136     212 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.7e-05
                     -TTSSHHHHHHHHHHH-TTSEEEEGGGS-TT...-SS-HHHHHHHTTSSTT--EEEEE CS
  tRNA_lig_kinase  7 tiGCGkttvaltlenlfgeWghvqnDnitgk...dkkklvkealellkkdeskvvlvD 61
                      iGCGk+tv++ l + +    ++  D i+ +     ++  +++++ +  d++  +l+D
       CCD24129.1  9 GIGCGKSTVSKRLAENHD-IPVIDADKIAREvvePGQDAYNKIVKYF-TDKIDYLLLD 64
                     59************9998.99*******8775423567778888888.6666666666 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 3
                      H CS
  tRNA_lig_kinase  18 t 18 
                      t
       CCD24129.1 185 T 185
                      1 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.9e-05     0.035       4      72 ..       3      65 ..       1      80 [. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.9e-05
      AAA_14  4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDE 72
                ++ +tG   +GK+t+ k+l++++      i  i+ d+   +  +  ++ ++ i + +++ k  yl+lD 
  CCD24129.1  3 VVGLTGGIGCGKSTVSKRLAENHD-----IPVIDADKIAREVVEPGQDAYNKIVKYFTD-KIDYLLLDD 65
                67899999***********98877.....999999998887766555677777776655.788999997 PP

>> ALC  Phage ALC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.7   4.7e-05     0.056     103     167 .]     133     198 ..     127     198 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.7e-05
         ALC 103 kssvlvnklldkerlGilnPskskeemaedveacfkiskrrkkst.ilisnlsadeivevikklks 167
                   sv+  + ++ erl i nP    ee+ + +++ + + +r kks  il +n +  e+ e i+++ +
  CCD24129.1 133 TISVICERDIQIERLKIRNPVMTTEEIENRINSQMSMDERVKKSDyILQNNGTLTELYEQINNVVM 198
                 56899*********************************9999986256677778899999988865 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   6.7e-05      0.08      13      43 ..       3      36 ..       2     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.7e-05
                EEEEEESTTSSHHHHHHHHTTSS--...SEEEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkp...teGeil 43
                +v+++G  G+GKSt+ k la++++    ++++i 
  CCD24129.1  3 VVGLTGGIGCGKSTVSKRLAENHDIpviDADKIA 36
                689****************999886677666663 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.3e-05     0.088       3      35 ..       6      38 ..       4     176 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.3e-05
                    EE-STTSSHHHHHHHHHHHHT-EEEEHHHHHHH CS
  Cytidylate_kin  3 iDGPagsGKssvaralaeklglkyldtgalYRa 35
                    + G  g GKs+v+++lae+ ++ ++d+ ++ R 
      CCD24129.1  6 LTGGIGCGKSTVSKRLAENHDIPVIDADKIARE 38
                    567789********************9999886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00024      0.29      10      41 ..       6      28 ..       2      90 .. 0.81
   2 ?   -1.3   0.0         2   2.4e+03      41      62 ..     174     195 ..     151     205 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00024
      AAA_22 10 vtGesGtGKTtllrrlleqldeeakaeeerpe 41
                +tG  G+GK+t+ +rl+e++d          +
  CCD24129.1  6 LTGGIGCGKSTVSKRLAENHD---------IP 28
                78999*************994.........44 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2
      AAA_22  41 evvfvtlpsstsskdllrellr 62 
                 +   + l++ +++++l++++ +
  CCD24129.1 174 KKSDYILQNNGTLTELYEQINN 195
                 3335666666777777777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 1727.09
//
Query:       CCD24130.1  [L=387]
Description: hypothetical protein NDAI_0C04710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-11   43.8   0.3    4.5e-11   43.0   0.3    1.4  1  ApbA_C    Ketopantoate reductase PanE/ApbA C terminal
  ------ inclusion threshold ------
       0.17   12.1   0.0       0.32   11.2   0.0    1.4  1  DUF2188   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.3   5.1e-15   4.5e-11       3     123 ..     240     372 ..     238     374 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 5.1e-15
      ApbA_C   3 rlarweKllinaainpltalldckn.gell.espelralvrallkEalavaeaeg..........velseerleeaveavlektaanrsSMlqDveagr 89 
                  ++r+e+l++ ++i +l+ l+dc+   ell    + + ++  ll+E ++++++            + ls++rl + v  +lek+a +++  l    + +
  CCD24130.1 240 YQIRLERLIVQSCIDSLSLLYDCQLnNELLhIIAQPNSILMDLLNEQINILKKSYpflenqnysnILLSQNRLFNVVVGLLEKNATKQPMVLHLKNQLN 338
                 589*********************98899975556688999**********888877777777645588888***********9998776666666667 PP

      ApbA_C  90 ktEidyinGavvklAeklgvetPvnellyellka 123
                 +t i+++ G + +lA  +++++++n++++el++ 
  CCD24130.1 339 QTPINELTGVFTRLAYTNNINCKWNKMVTELVRG 372
                 ********************************97 PP

>> DUF2188  Uncharacterized protein conserved in bacteria (DUF2188)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.5e-05      0.32      42      59 ..      53      69 ..      45      70 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.5e-05
     DUF2188 42 qggselvihgrdGqirer 59
                + +s+++ih++dG+i e+
  CCD24130.1 53 N-DSKVCIHKQDGTINEQ 69
                4.89***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2856.09
//
Query:       CCD24131.1  [L=472]
Description: hypothetical protein NDAI_0C04720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   12.4   0.1       0.56   10.6   0.0    2.1  2  SET       SET domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.1e-05      0.56      36     169 .]     123     310 ..      33     310 .. 0.50
   2 ?   -2.0   0.0      0.24   4.2e+03      55      82 ..     407     434 ..     317     447 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 3.1e-05
                 H....................HTEEEEEXGGXX....GGSX........HHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSXXXHCCCC CS
                 x....................xxxxxxxxxxxx....xxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  36 e....................aylfslpeapkn....laft........kelakasastllqklakdqkqaekedtdaalkasskaesdlnaskpeaga 102
                                      ++++ +p++++        +           ++ + ++   kl ++ ++  ++dt + + ++ + ++++ + kp++ +
  CCD24131.1 123 VliekvllplwsdnqvesfwkPFFDVWPTKDELftmpC--IwvedksgqYKNTMIAHPPHSLKLMEKRRKVYHKDTVNLVPKIMEIKDKYFNDKPFPDS 219
                 05555555555555555566566666775533333321..12122223333333333333344444444444444444444444444444322222222 PP

                 C...HCCCHEE..EETEEEEEECCC............GTTGGGCEEXSSSSEEEEEEEE.........TTSSEEEEEESSXBXTTEEEEEXTT CS
                 x...xxxxxxx..xxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 103 f...saiagys..idaralksgnga............gplarflNHsCdpNcnltvqnv.........lrgprvavfAtrdIkkGeEltidYg 169
                     ++i + +  i++r+l+   +             +p+++flNH   p   l+ ++           ++ +++    +  k +eEl+++Yg
  CCD24131.1 220 VllnEEILNIYfnINSRCLYVNIPLkkfqnnddhftlAPFVDFLNHT--PETDLHCYPArpkdllgnkISNFTIMSGEYQYKKINEELFLNYG 310
                 23332222222234455555555556666666777799********6..66655777767777666443333333333455566778888886 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.24
                 HHHHHTTSSHHHHHHHHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  55 lakasastllqklakdqkqaekedtdaa 82 
                 + k  +s llqk  k+ ++ +++++++ 
  CCD24131.1 407 KFKDFLSYLLQKNLKNSEKIKQQRERVT 434
                 4445556666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3319.72
//
Query:       CCD24132.1  [L=553]
Description: hypothetical protein NDAI_0C04730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-18   65.1   0.4    2.1e-17   63.2   0.4    2.2  1  FHA             FHA domain
    1.2e-05   25.5   0.0    4.6e-05   23.7   0.0    2.0  1  Yop-YscD_cpl    Inner membrane component of T3SS, cytoplasmic
  ------ inclusion threshold ------
      0.013   15.7   0.0      0.069   13.4   0.0    2.2  1  FHA_2           FHA domain
      0.018   14.9   0.8       0.04   13.8   0.8    1.5  1  Tir_receptor_N  Translocated intimin receptor (Tir) N-terminu
      0.064   13.4   0.3       0.16   12.0   0.3    1.7  1  TFR_dimer       Transferrin receptor-like dimerisation domain


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.4   5.7e-21   2.1e-17      13      69 .]     177     233 ..     141     233 .. 0.83

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 5.7e-21
                 TTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA  13 lddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 +d++++Sr+Ha +++d++sgk+ l+Dl+S+nGtf+N+++i+++++veL+ gdvi+lG
  CCD24132.1 177 FDSRVLSRNHASLTCDPESGKILLRDLNSSNGTFLNNVKISSDKEVELNIGDVIDLG 233
                 44788**************************************************98 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.3e-08   4.6e-05      35      83 ..     181     234 ..     177     236 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 1.3e-08
                   TS-TT-EEEEEE..TTEEEEEE-CESS--EETTEE-S.ECC..--TTSEEEETT CS
  Yop-YscD_cpl  35 evsrkhlkLeve..eesvrledlgsrngllvngerve.ele..lrpgdvlelGt 83 
                    +sr+h++L+++  + ++ l+dl+s ng+++n+ +++ ++e  l+ gdv+ lGt
    CCD24132.1 181 VLSRNHASLTCDpeSGKILLRDLNSSNGTFLNNVKISsDKEveLNIGDVIDLGT 234
                   579********95455799*****************9733366**********7 PP

>> FHA_2  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.9e-05     0.069      25      85 ..     171     232 ..     156     243 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
       FHA_2  25 RgpetkikdkkcSrnqvelkadlekklvkvkqlG.anpssvngkklkknesvelkegqtlel 85 
                 R+ + +   + +Srn+ +l+ d e+ ++ ++ l   n + +n++k++++++vel+ g+++ l
  CCD24132.1 171 RTDNGNFDSRVLSRNHASLTCDPESGKILLRDLNsSNGTFLNNVKISSDKEVELNIGDVIDL 232
                 566666667889*********************6268999******************9988 PP

>> Tir_receptor_N  Translocated intimin receptor (Tir) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.8   1.1e-05      0.04     185     246 ..     487     548 ..     473     550 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.1e-05
  Tir_receptor_N 185 epkdtgeskakdresesgavnsaetkvvsetstststsslrsdpklwlslgtiaagliglaa 246
                      p + + + a++ ++ + ++   +  ++ +tst++   ++ s+ k+ +s+g++a gl+ + a
      CCD24132.1 487 TPIEDSTHTASEDDTLNLNKTENDFDTIKNTSTTANDGTIMSNWKVNVSIGAVAIGLVAIGA 548
                     555554444444444444444444559999***************************99876 PP

>> TFR_dimer  Transferrin receptor-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   4.6e-05      0.16      30      97 ..     427     502 ..     391     523 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
   TFR_dimer  30 v...ggaessllavrkrrkiNdklmrferafldpeglpgrpwykHvvfgpslwtgyagatFPgirdaiee......g 97 
                 v    +   +l++v +r++  + l ++e+ +l+ + l +r+  k+++   ++ ++ +++t+  i d+ +        
  CCD24132.1 427 VsteRDTVYDLIKV-QRMENDKYLQKMEQELLSARNLLQREKDKNLLLMNKKRSSSSKNTLTPIEDSTHTaseddtL 502
                 13233444466677.56666666789**************************999***********99975555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1401  (0.0781416); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4113.60
//
Query:       CCD24133.1  [L=160]
Description: hypothetical protein NDAI_0C04740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-38  132.1  11.9    1.7e-38  132.0  11.9    1.0  1  DASH_Spc19  Spc19
  ------ inclusion threshold ------
       0.14   12.4   4.8        6.2    7.1   0.1    2.7  3  DUF1319     Protein of unknown function (DUF1319)
       0.53   10.3   5.3          3    7.9   0.3    2.8  3  Noelin-1    Neurogenesis glycoprotein
        0.7    9.7   0.1        0.7    9.7   0.1    3.0  2  Phage_GP20  Phage minor structural protein GP20
       0.85   10.1   6.2         11    6.6   2.0    3.1  2  NPV_P10     Nucleopolyhedrovirus P10 protein
       0.87    9.8   9.8          1    9.5   5.6    2.0  2  Fib_alpha   Fibrinogen alpha/beta chain family
        1.1    9.2   8.9          1    9.3   0.5    3.0  3  Prefoldin   Prefoldin subunit
        1.6    8.7  12.7        4.5    7.2   0.0    3.6  3  GIT_CC      GIT coiled-coil Rho guanine nucleotide exchange f
        1.8    9.1  13.3        5.2    7.6   1.9    3.2  2  ZapB        Cell division protein ZapB
        5.1    7.0   8.0        3.6    7.4   1.7    2.5  2  Sas6_CC     Sas6/XLF/XRCC4 coiled-coil domain


Domain annotation for each model (and alignments):
>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0  11.9   9.7e-42   1.7e-38       1     157 []       5     158 ..       5     158 .. 0.93

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 9.7e-42
                 .HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH.HHHHHH-------TTTHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  DASH_Spc19   1 LencvsSLrssvslLqssietLdsgvsdfprlk.kvLkttrvFeLipesdleaakaslaeeiePqieellekaekeleklerreetLkaklelqegrls 98 
                 Le++v+S ++++ lLq++++tL+++ +d++ l+ ++L ++rvFeL+pe+d+++ak sl+ee++P +++l +k++k+  kl+r+ +t+++++el+++rl+
  CCD24133.1   5 LEESVKSFERMIGLLQTTVDTLKHDSEDNTHLTeTLLMSRRVFELVPEYDVQRAKLSLIEEVDPIVKTLEDKLQKSTGKLQRELDTIQQTCELNKLRLN 103
                 89************************************************************************************************* PP

                 H......HHHHT-XXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  DASH_Spc19  99 naesskkeeeeseeskeeeeeeenkeeekskkkltkeelerlkkLkqkKerLkytlerL 157
                 n+++++ ++ +s+e++  + +++         ++t+eel+ l++Lk++K++L+++l++L
  CCD24133.1 104 NNHRTNLTTGTSNEMDAGNLSTDVVVM----GSSTNEELDTLRALKNRKQELEERLAQL 158
                 *99999999999999986555443332....3389********************9987 PP

>> DUF1319  Protein of unknown function (DUF1319)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.6     0.006        11      41     106 ..       5      77 ..       2      80 .. 0.66
   2 ?    0.7   0.2      0.33   5.8e+02      46      63 ..      75      92 ..      42     119 .. 0.64
   3 ?    7.1   0.1    0.0035       6.2      26      57 ..     127     160 .]     104     160 .] 0.75

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.006
     DUF1319  41 vkekrrslekqlkklkselkklrelylerrPlsk.....qeveelvveiskq.Pkl.ieeealrlteelklkl 106
                 + e  +s+e+ +  l+  + +l+++  ++  l++     + v elv e   q  kl + ee   + + l+ kl
  CCD24133.1   5 LEESVKSFERMIGLLQTTVDTLKHDSEDNTHLTEtllmsRRVFELVPEYDVQrAKLsLIEEVDPIVKTLEDKL 77 
                 678899*******************999998886222224566777666544233322334555555555555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.33
     DUF1319 46 rslekqlkklkselkklr 63
                  l+k   kl+ el +++
  CCD24133.1 75 DKLQKSTGKLQRELDTIQ 92
                233333334455554444 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0035
     DUF1319  26 rvalgskv..nlkslkivkekrrslekqlkklks 57 
                  v++gs    +l +l+++k+++++le++l +l+s
  CCD24133.1 127 VVVMGSSTneELDTLRALKNRKQELEERLAQLQS 160
                 44455544335889****************9996 PP

>> Noelin-1  Neurogenesis glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         1   1.8e+03      69      92 ..       9      32 ..       3      41 .. 0.53
   2 ?    3.8   0.1     0.032        58      65      91 ..      59      85 ..      45      96 .. 0.78
   3 ?    7.9   0.3    0.0017         3      49      87 ..     121     159 ..     114     160 .] 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1
    Noelin-1 69 vrktetllktlesklkvveedrke 92
                v++ e ++  l+++++++++d + 
  CCD24133.1  9 VKSFERMIGLLQTTVDTLKHDSED 32
                444455555555555554444433 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.032
    Noelin-1 65 dlqyvrktetllktlesklkvveedrk 91
                 l  +++++ ++ktle+kl++ + + +
  CCD24133.1 59 KLSLIEEVDPIVKTLEDKLQKSTGKLQ 85
                578899999999999999998766544 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0017
    Noelin-1  49 qnlsqsievldlRtsrdlqyvrktetllktlesklkvve 87 
                  nls+ + v+   t+++l+ +r  ++  ++le++l +++
  CCD24133.1 121 GNLSTDVVVMGSSTNEELDTLRALKNRKQELEERLAQLQ 159
                 59*********************************9986 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00039       0.7      21      58 ..       3      40 ..       1      48 [. 0.92
   2 ?   -2.0   7.5       1.5   2.8e+03     101     101 ..     130     130 ..      50     160 .] 0.47

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00039
  Phage_GP20 21 deveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqi 58
                d +ee +++++  ++  ++++++Lk +++dn+ L++++
  CCD24133.1  3 DALEESVKSFERMIGLLQTTVDTLKHDSEDNTHLTETL 40
                678999****************************9875 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.5
  Phage_GP20 101 k 101
                 +
  CCD24133.1 130 M 130
                 2 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.0    0.0061        11      12      44 ..       8      40 ..       4     103 .. 0.84
   2 ?    0.4   0.1      0.52   9.4e+02      34      53 ..     138     157 ..     118     160 .] 0.44

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0061
     NPV_P10 12 dikavddkVdalqqqvddvqenlpdvtelnekL 44
                 +k  +  +  lq+ vd ++++++d t+l+e L
  CCD24133.1  8 SVKSFERMIGLLQTTVDTLKHDSEDNTHLTETL 40
                577777788889999999999999999998877 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.52
     NPV_P10  34 lpdvtelnekLdaqsaqLae 53 
                 l ++  l+++ +++ + La+
  CCD24133.1 138 LDTLRALKNRKQELEERLAQ 157
                 33333333333333333333 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.077   1.4e+02      23      60 ..       2      39 ..       1      48 [. 0.73
   2 ?    9.5   5.6   0.00058         1      31     122 ..      64     159 ..      54     160 .] 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.077
                HHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH CS
   Fib_alpha 23 qdlllkyekdvkkdlekleneleeisnstkeaeelvke 60
                +d+l++  k++++ +  l+ +++++++ +++  +l+++
  CCD24133.1  2 TDALEESVKSFERMIGLLQTTVDTLKHDSEDNTHLTET 39
                67777777888888888888888888887777777665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00058
                 CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  31 kdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksske....leeeilrlketidaqesnirvLqnvlesneqkiqkLe 122
                 ++v+  +++le++l++ + + +   ++++++ +  + + ++++ ++ ++  s+++    l ++++ +  + +++  ++r+L+n  +++e+++++L+
  CCD24133.1  64 EEVDPIVKTLEDKLQKSTGKLQRELDTIQQTCELNKLRLNNNHRTNLTTGTSNEMdagnLSTDVVVMGSSTNEELDTLRALKNRKQELEERLAQLQ 159
                 5788889999999999999999999999999988888888887544444444443333366788888888888999**************999997 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.072   1.3e+02      92     112 ..       8      28 ..       2      42 .. 0.45
   2 ?    9.3   0.5   0.00056         1      72     115 ..      52      96 ..      48      99 .. 0.89
   3 ?    1.8   0.5      0.12   2.2e+02      81      97 ..     143     159 ..     132     160 .] 0.60

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.072
                 HHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  92 qlekleeeleklkdqittlea 112
                 +++++e ++  l+++++tl +
  CCD24133.1   8 SVKSFERMIGLLQTTVDTLKH 28 
                 333333333333333333322 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00056
                 EEEHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  72 eksleeAiellkkkleelekqle.kleeeleklkdqittleanla 115
                 e++++ A+  l ++++ + k+le kl+++  kl+++++t++++++
  CCD24133.1  52 EYDVQRAKLSLIEEVDPIVKTLEdKLQKSTGKLQRELDTIQQTCE 96 
                 89999999999999999999886489***************9986 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHH CS
   Prefoldin  81 llkkkleelekqlekle 97 
                  lk++++ele+ l +l+
  CCD24133.1 143 ALKNRKQELEERLAQLQ 159
                 45666666666665554 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0025       4.5      37      61 ..       7      31 ..       2      39 .. 0.79
   2 ?    4.3   1.7      0.02        36      34      61 ..      76     105 ..      70     109 .. 0.73
   3 ?    2.5   1.7     0.074   1.3e+02      32      51 ..     141     160 .]     118     160 .] 0.89

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0025
      GIT_CC 37 kvNtslsdelrlLQskvqkLqaeNa 61
                ++ +s ++++ lLQ  v++L+ + +
  CCD24133.1  7 ESVKSFERMIGLLQTTVDTLKHDSE 31
                56678999************98744 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.02
      GIT_CC  34 qLlkvNtslsdelrlLQs..kvqkLqaeNa 61 
                 +L+k+  +l++el  +Q+  +++kL  +N+
  CCD24133.1  76 KLQKSTGKLQRELDTIQQtcELNKLRLNNN 105
                 478888888888888887445677777776 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.074
      GIT_CC  32 iqqLlkvNtslsdelrlLQs 51 
                 + +L++ +++l++ l++LQs
  CCD24133.1 141 LRALKNRKQELEERLAQLQS 160
                 6789999999********97 PP

>> ZapB  Cell division protein ZapB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   3.9     0.038        67       7      40 ..       3      36 ..       1     112 [. 0.81
   2 ?    7.6   1.9    0.0029       5.2      15      38 ..     136     159 ..     132     160 .] 0.85

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.038
        ZapB  7 eqLEskiqkaidtitlLqmeieeLkeeneelkee 40
                + LE+++++   +i lLq  ++ Lk+++e  +  
  CCD24133.1  3 DALEESVKSFERMIGLLQTTVDTLKHDSEDNTHL 36
                78999*****9*************9988765544 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0029
        ZapB  15 kaidtitlLqmeieeLkeeneelk 38 
                 + +dt+++L+++ +eL+e+ ++l+
  CCD24133.1 136 EELDTLRALKNRKQELEERLAQLQ 159
                 568999**********99999997 PP

>> Sas6_CC  Sas6/XLF/XRCC4 coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.5     0.064   1.2e+02      21      29 ..      72      80 ..      71      81 .. 0.88
   2 ?    7.4   1.7     0.002       3.6      12      27 ..     141     156 ..     141     157 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.064
                HHHHHHHHH CS
     Sas6_CC 21 lLeqkLkkT 29
                +Le+kL+k+
  CCD24133.1 72 TLEDKLQKS 80
                7******96 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHHHHHH CS
     Sas6_CC  12 LkslKeeKqlLeqkLk 27 
                 L  lK +Kq Le++L 
  CCD24133.1 141 LRALKNRKQELEERLA 156
                 678***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1425  (0.0794802); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1116.97
//
Query:       CCD24134.1  [L=341]
Description: hypothetical protein NDAI_0C04750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-92  306.8   0.0      1e-91  306.2   0.0    1.3  1  Coq4      Coenzyme Q (ubiquinone) biosynthesis protein Coq4


Domain annotation for each model (and alignments):
>> Coq4  Coenzyme Q (ubiquinone) biosynthesis protein Coq4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.2   0.0   5.6e-96     1e-91       1     221 []      92     313 ..      92     313 .. 0.99

  Alignments for each domain:
  == domain 1  score: 306.2 bits;  conditional E-value: 5.6e-96
        Coq4   1 yeghvplslleklllavgsaiaalvdpergdlvaalgettglpa.lerlrekmlsdeeGrriLkerpritsetldleklkklpentlGraYakfleken 98 
                 yeghvpl+l+eklll++ s+i ++++pe+g ++++lge+t++p  le+l+++mlsde+GrriL+++p ++++ l+++kl+klpen++G++++k++++e+
  CCD24134.1  92 YEGHVPLYLHEKLLLFLSSGISSFLHPENGMNIVKLGEATAIPPfLESLKRTMLSDETGRRILRDKPYVHTSILHFDKLSKLPENSFGYTFYKWCQTEK 190
                 99***************************************8777****************************************************** PP

        Coq4  99 vspdtRapvryiddeelaYvmqRyrevHDflHvllglptnvegEiavkafefaqtglpmallsalfgplrlsskererlleeylpwalragkkakelln 197
                 vspdtRapv+yidd+ +a+++qRyr++HDf+H+l+++p+ +egEi++ka+e a++g+pma+l+a+f+plrl++ +r+rl e+ylpwa+++g ++k+l+n
  CCD24134.1 191 VSPDTRAPVTYIDDPIHAFIFQRYRQCHDFYHALVNMPIIIEGEITIKALEGANMGVPMAILGAIFAPLRLKPIQRKRLREIYLPWAVKTGLNCKPLVN 289
                 *************************************************************************************************** PP

        Coq4 198 vywEeeletdleelrkelgiekpp 221
                 vywEe le+d++elr+elgi+ pp
  CCD24134.1 290 VYWEELLEKDVNELREELGIKMPP 313
                 ********************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2501.99
//
Query:       CCD24135.1  [L=593]
Description: hypothetical protein NDAI_0C04760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-70  237.6  44.0    2.9e-70  237.2  44.0    1.1  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.2  44.0   1.6e-74   2.9e-70       1     422 [.      32     464 ..      32     480 .. 0.95

  Alignments for each domain:
  == domain 1  score: 237.2 bits;  conditional E-value: 1.6e-74
  Transp_cyt_pur   1 pvpeeeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvv 95 
                     p+  ++ tw+ +  fs W   ++++  w  ++++l++gL++++++ + i+g +++ if+  +++ G    +   i  R++fGi+gs++++l+rv+
      CCD24135.1  32 PIKLKNQTWGFWSNFSYWSVVSFSVVSWISASSALSVGLSYGETIGTFIIGDVVAIIFTLANSYPGLDWKVGYTINQRFVFGIYGSWFGILIRVL 126
                     5666889**************************************************************************************** PP

  Transp_cyt_pur  96 iaivwfgvqawiGsealllmlgkifgkwleigg...ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg 187
                     + iv +g++aw+G+ +++++l++   + l++++   + +++++ el++f+ f v+++   l+ +  ++ +  i   ++ +   g+ i++  +a+g
      CCD24135.1 127 MSIVNYGSNAWLGGLCINMILDSWSHHYLHLPNtlsKHVAMTTKELIGFILFHVITAFCYLMRPYHMNYILIISCTATCFSMLGMVIYLTHQAGG 221
                     ****************99988887655******999999******************************************************** PP

  Transp_cyt_pur 188 .Gpvldkavklgkse...lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakf 278
                      G+++ +++  + s    + +  +  + ++ ++++ n +D++r+++++++  ++ ++a+ +  t++ ++g+++a+a++ +y+ ++w+p+d+   +
      CCD24135.1 222 vGDYFTAKGTATGSTkawAWVYMISYWFGAVSPAACNQSDYSRFGSSQTAIWLGTILALLIPTTIVPVFGVIGASAGMKLYNIEMWQPMDFFTYW 316
                     ******888877444587667788899******************************************************************** PP

  Transp_cyt_pur 279 det.......agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavflspvagvi 366
                     ++        a++++  + + ++q++ +is++  ++g+dla llPk++nikrg++ +a++++++ pw+ ++sss  f++ +s ++v+++p+++v+
      CCD24135.1 317 LKGnyssgarAASFFCGVSFSMSQMAYTISNAGFASGMDLAGLLPKYLNIKRGAILTAMVSVAVQPWNFYNSSSV-FLTVMSSFGVVMTPIIAVM 410
                     *999***********************************************************************.******************* PP

  Transp_cyt_pur 367 iadyfvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvg 422
                     i d f +r++++++ + +     + Y+++kg Nwra++a+++G+a+gl+g+a +v 
      CCD24135.1 411 ICDNFLIRKRNYSVSEAFV--LKGEYYFNKGANWRAMVAWVCGMAPGLPGIAWQVN 464
                     ****************999..9****************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 4042.29
//
Query:       CCD24136.1  [L=813]
Description: hypothetical protein NDAI_0C04770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-41  142.0   7.1    1.9e-41  142.0   7.1    3.6  4  Cation_efflux    Cation efflux family
  ------ inclusion threshold ------
        1.7    8.5   7.1        0.4   10.6   0.7    2.1  2  SPX              SPX domain
        5.9    7.5  11.8        2.2    8.9   8.0    2.0  2  DUF4766          Domain of unknown function (DUF4766)


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.5      0.29   1.7e+03     149     187 ..      63     102 ..      22     127 .. 0.68
   2 ?    2.1   0.5     0.023   1.4e+02      77     116 ..     229     267 ..     222     286 .. 0.63
   3 ?   -1.7   0.1      0.34     2e+03     174     187 ..     311     324 ..     296     379 .. 0.65
   4 !  142.0   7.1   3.1e-45   1.9e-41       3     199 .]     422     632 ..     420     632 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.29
  Cation_efflux 149 tslgvlvsalvillfnlksg.plaDpvaslligliilysa 187
                    +s+ ++++  + ++     + +l++  + + + l+ily a
     CCD24136.1  63 SSIFIVIGYALGIFSLFRNKnNLIQNGLPIYVFLLILYQA 102
                    3333333333333322222235555555555555555555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.023
  Cation_efflux  77 lllglavfllleaiqklikegereihaglalvvalvslvv 116
                    +++ +++ +++ +i+k++  +   +  +l+++v ++sl+v
     CCD24136.1 229 FVIEAICLIIIYSITKIL-YPNIYNLQPLMFIVNVGSLAV 267
                    444455566666666666.555555556666666666555 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.34
  Cation_efflux 174 vaslligliilysa 187
                    ++s li++i+ly +
     CCD24136.1 311 FISGLISIILLYLS 324
                    33333333333322 PP

  == domain 4  score: 142.0 bits;  conditional E-value: 3.1e-45
  Cation_efflux   3 lsllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygr.levlgalvsgllllglavfllleaiqklikeg 97 
                     +ll+n+++++v+l + + ++Sl ll+d++h+ +d+ slll+l+a  ls+ pp+ +fpf + + le+l ++++g+lllg+++ +++eai +l+ ++
     CCD24136.1 422 SFLLLNTTFMFVQLLYSFRSKSLGLLSDSLHMALDCGSLLLGLIATILSKNPPSDKFPFSLSNyLETLSGFTNGILLLGIVCGIFVEAIGRLF-NP 516
                    5799*********************************************************9836****************************.** PP

  Cation_efflux  98 ereihaglalvvalvslvvnlalllilrragrkl.................rsaalkaaalhvlgDaltslgvlvsalvillfnlksgplaDpvas 176
                     +++ +  +lvva ++l+vnl++l+++ ++ +                    ++++++++lh+l D+l+s+gv++s l+i+l+   +++++Dp+as
     CCD24136.1 517 IPLHGTNELLVVATIGLLVNLVGLFAFDHHDAGGnnnhshiqdpedkndrgTNENMRGIFLHILADTLGSVGVVISTLLIKLT---HWHIFDPIAS 609
                    ***************************9997777999*********************************************9...4488****** PP

  Cation_efflux 177 lligliilysalkllkeslseLl 199
                    ++i+++il sa +llk+++s++l
     CCD24136.1 610 IFIAFLILLSAIPLLKSTSSNML 632
                    ******************99976 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.9     0.047   2.8e+02     117     158 ..     376     409 ..     322     443 .. 0.58
   2 ?   10.6   0.7   6.6e-05       0.4      92     162 ..     568     724 ..     541     757 .. 0.52

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.047
         SPX 117 ppsansssssddssesnpadssssssssesesssssspsllr 158
                 ++ +++ +s+d+s+++         ss+++++++ ++ +++r
  CCD24136.1 376 HSAHSHDHSHDHSHSHI--------SSNKEDTEQHQEMNIFR 409
                 11111111111111111........12222223333333333 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 6.6e-05
         SPX  92 e...........................................................................................slprrsp 99 
                 +                                                                                           ++pr  p
  CCD24136.1 568 TnenmrgiflhiladtlgsvgvvistlliklthwhifdpiasifiaflillsaipllkstssnmllklddtnhnlvkdalhqismtpgisgyTTPRFWP 666
                 355566666666666666666666666666666666666666666666666666666666666666666666666666677777777777773333334 PP

         SPX 100 lsrssrssssygglvssppsansssssddssesnpadssssssssesesssssspsllrrlfs 162
                 + +ss+ +s+  g ++s+ +++s+++s+++s+s+     s s+++e +  ++++++l+r++++
  CCD24136.1 667 SRMSSSGHSHSHGHSHSHGHSHSHGHSHSHSHSS-----SHSDPNECRDDDTDTRTLHRHTQK 724
                 4344444444444444443333333333333333.....333333444444444444444433 PP

>> DUF4766  Domain of unknown function (DUF4766)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.41   2.5e+03      33      52 ..     385     404 ..     368     414 .. 0.52
   2 ?    8.9   8.0   0.00037       2.2      64     101 ..     670     704 ..     649     711 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.41
     DUF4766  33 ysggygggygsghgsegaqe 52 
                   +++++ +++ +++e+ qe
  CCD24136.1 385 HDHSHSHISSNKEDTEQHQE 404
                 23344444444444444444 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00037
     DUF4766  64 saaghgasgGasgggysaGgsyagGhsagGasssssgg 101
                 s+ gh++s+G+s+   s G s+++Ghs++ ++sss+++
  CCD24136.1 670 SSSGHSHSHGHSH---SHGHSHSHGHSHSHSHSSSHSD 704
                 6778998888875...8999999999999998886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1193  (0.0665402); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5459.16
//
Query:       CCD24137.1  [L=1013]
Description: hypothetical protein NDAI_0C04780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-42  144.5  13.9    4.5e-42  144.5  13.9    2.1  2  EST1_DNA_bind  Est1 DNA/RNA binding domain
    2.1e-22   80.2   1.0    2.1e-22   80.2   1.0    3.9  6  EST1           Telomerase activating protein Est1


Domain annotation for each model (and alignments):
>> EST1_DNA_bind  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.5  13.9     5e-46   4.5e-42       1     280 [.     268     579 ..     268     581 .. 0.87
   2 ?   -3.5   0.6      0.63   5.7e+03     112     151 ..     807     851 ..     789     881 .. 0.56

  Alignments for each domain:
  == domain 1  score: 144.5 bits;  conditional E-value: 5e-46
                    HHHHHHHHHHH-TTB.HHHHHHHHHHHHHTT-HHHHHHHHHHHHHBSB--TTHHHHHHHHHT-TT-HHHHHHHHHHHHH.TT.............- CS
  EST1_DNA_bind   1 AlrYYllAaellPsn.GepyNQlgviaiysedkldavYyylRSllssnpfptAkeNLellfekirkklekgenkqskes.kq.............e 81 
                    Al Y++    llPs+ Ge+++Qlg+i++++++ + a  y++R++l+++++p A +N+  +++ +++k + + n+++    ++             +
     CCD24137.1 268 ALFYFNWSNLLLPSFgGESFLQLGLIHVHTKNFGIALQYFIRASLTRISNPIAMNNFQAIISNNNSKENNKNNNNNR-LyENiidiikdtrvnefK 362
                    5668999999****9459***********************************************999998877766.4466999*******9999 PP

                    --HHHHHHHHHHTTHHHHHHHHSTTTT........TSSTTG...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S--SXXXXXXXXX CS
  EST1_DNA_bind  82 ktpeellkrliilFlrlhgklftgtsf....k..delerev...lkklqillseslkernlkdaslllkmllinifaienlkdkssgeeskektll 168
                     t++++ ++++ +F+ l+g+ + ++s+    k     ++++   lk+l++++ e++++r +k+ +l+l+ l+ +i+ +++l  + ++++++ + ++
     CCD24137.1 363 PTKIVNKEIIEYYFIVLFGINYNPSSWvdtkKngTQFLKSTdinLKHLEASFLEKISTRFFKNMNLILQNLITAIGGFHLLLLNEKKNSKE-QNIF 457
                    ****************************9862565555555578***********************************554444444333.3333 PP

                    .........XXXXHHHHHHHHHHHHHHHTGGGTTT.....-SS-THHHHHHHHHHHHHTT-HHHHHHHHT-HHHHHHHHHHHHHHHH-.....--- CS
  EST1_DNA_bind 169 .........llrlalrfifelfglllekvetlealkrdketpsatrvLpalrvylswlksnkslledvekdeklvsslsdllnellss.....ell 250
                              +  +l f+f+++++l+++v + +++    e p+ +++ +++r++lswl sn+ +l++ +++e ++ +l +l n++ +      +  
     CCD24137.1 458 nigleelskHQLSYLDFVFKFISHLIKNVIMISWE----EKPEDFQYIAMVRLILSWLNSNRCILQYSHTNELFTITLAKLSNQIIKNksiklDTS 549
                    4778998888888**********************....************************************************766666556 PP

                    ------------SS--HHHHHTTTBGGGTT CS
  EST1_DNA_bind 251 nksfdvekdpkrdylleEDielkgFsplke 280
                    +  +++e  p+r+yl+eED+ +++F+ +++
     CCD24137.1 550 KLKQNSEFVPTRTYLFEEDVIFREFASIHF 579
                    6666666667777************99986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.63
                    SSTTG.HHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHHHHHH CS
  EST1_DNA_bind 112 lerev.lkklqillseslkernlk....daslllkmllinifaie 151
                     e ++ l++l+ +l++ + ++       + s+   + ++n +a++
     CCD24137.1 807 SETSLpLRDLENSLKNMTMSDQNMinnnNNSTNESVSYLNTAAFQ 851
                    444445666666666665555554555444444444444555544 PP

>> EST1  Telomerase activating protein Est1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.4      0.35   3.2e+03      92     129 ..       9      46 ..       2      52 .. 0.45
   2 !   80.2   1.0   2.4e-26   2.1e-22       2     133 ..     106     251 ..     106     254 .. 0.84
   3 ?   -3.3   0.0       1.4   1.3e+04      18      95 ..     324     338 ..     292     354 .. 0.59
   4 ?   -2.0   0.2      0.59   5.3e+03      40      66 ..     463     485 ..     408     564 .. 0.49
   5 ?   -2.8   0.7      0.99   8.9e+03     118     118 ..     825     825 ..     771     870 .. 0.52
   6 ?   -2.2   0.3      0.69   6.2e+03      84     107 ..     981    1005 ..     914    1011 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.35
                 ----.----TTB--TTSHHH.HHHHHHHHHHHHHHHHHH CS
        EST1  92 ekse.teseeeksslssseqksavlklvhrcLiyLGDla 129
                 ++s+ ++s++++  ++s ++ sa + ++      L Dl+
  CCD24137.1   9 TESKqESSSNQSTVSNSINN-SATNDSINEVRNILSDLE 46 
                 33332223333333333333.555555555555555555 PP

  == domain 2  score: 80.2 bits;  conditional E-value: 2.4e-26
                 HHHHHHHHTHHHHHHHHHHHHHHHH----..........---H.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-B-..........HTT........ CS
        EST1   2 veellWrkvyyevikllkkqlknldsapk..........kkkkpvekrklklklvkflksaigfYqsliqrllsefel..........elssvlkvilk 80 
                 ++++lW ++yy+v+k++++++k + ++             + + +e+rk+++kl+kf k + +fY s+iq++l++f++          e      + ++
  CCD24137.1 106 ILDQLWGRIYYPVFKWFQNWRKWIITNYFkkvqpsqnanDQTRFIEFRKMNSKLNKFAKLVNQFYSSIIQTILKKFDTslllpklfykE------INEI 198
                 6799*********************4333555566677877777*********************************988666544433......4456 PP

                 ....-.....---------TTB--TTSHHH.HHHHHHHHHHHHHHHHHHHHHH CS
        EST1  81 sktklpekessekseteseeeksslssseqksavlklvhrcLiyLGDlaRYre 133
                  + +l ++ ++++s+ +s++ +++++++ +   +l+++++cL yLG ++RY++
  CCD24137.1 199 FPLSLYQSSPPSPSHFSSSSPSIAYDNTTTDMIILMMLQKCLFYLGHCQRYKA 251
                 8889999999999997777777777777777********************97 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.4
                 HHHHHHHHH-------H.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-B-HTT............-.....----- CS
        EST1  18 lkkqlknldsapkkkkkpvekrklklklvkflksaigfYqsliqrllsefelelssvlkvilksktklpekessekse 95 
                 +++ ++n++                                                               s+e+++
  CCD24137.1 324 FQAIISNNN---------------------------------------------------------------SKENNK 338
                 333333333...............................................................222222 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.59
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EST1  40 klklklvkflksaigfYqsliqrllse 66 
                 +l+++   +l+ + +f  +li+    +
  CCD24137.1 463 ELSKHQLSYLDFVFKFISHLIK----N 485
                 3333333333333333333333....3 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 0.99
                 H CS
        EST1 118 v 118
                 +
  CCD24137.1 825 M 825
                 1 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 0.69
                  .-.....-----.----TTB--TTS CS
        EST1   84 klpekessekse.teseeeksslss 107 
                   ++++ + +ks  t+s ++ks++++
  CCD24137.1  981 MYQKNNRHSKSAtTKSATKKSDKKC 1005
                  2233333333333444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1013 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1754  (0.0978303); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 7041.14
//
Query:       CCD24138.1  [L=1033]
Description: hypothetical protein NDAI_0C04790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-08   34.5   9.4    3.1e-08   33.6   9.4    1.4  1  Zn_clus          Fungal Zn(2)-Cys(6) binuclear cluster domain
      0.004   17.1   1.1      0.011   15.7   1.1    1.8  1  Cytokin_check_N  Cdc14 phosphatase binding protein N-terminus


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   9.4   3.4e-12   3.1e-08       2      35 ..     808     840 ..     807     844 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 3.4e-12
                 S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCT CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfyse 35 
                 +C+ Cr +K KC +++P+C+nC++l+l+C  y+e
  CCD24138.1 808 GCWICRLRKKKCTEERPTCQNCERLQLTCH-YEE 840
                 6****************************9.776 PP

>> Cytokin_check_N  Cdc14 phosphatase binding protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.1   1.2e-06     0.011       7      62 ..     598     655 ..     597     656 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.2e-06
  Cytokin_check_N   7 ltdpsntleelseeiverfkklYPde..eeleIlslqdenecDLDpdflvkdvFesdn 62 
                      lt+p n++++l+++++++ ++ +P +  ++ +I +lqd+ne+D ++ f  +d  esd+
       CCD24138.1 598 LTNPLNSIQQLQSQVKAHQNQQWPPLsnDNNNINHLQDDNETDNENAFSTEDEIESDD 655
                      799*********************9887999*****************9999777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1033 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2436  (0.135869); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.91u 0.30s 00:00:01.21 Elapsed: 00:00:00.44
# Mc/sec: 7070.30
//
Query:       CCD24139.1  [L=927]
Description: hypothetical protein NDAI_0C04800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-95  318.7   6.2    2.8e-95  318.7   6.2    3.2  2  PIP5K           Phosphatidylinositol-4-phosphate 5-Kinase
  ------ inclusion threshold ------
       0.81    8.5   4.2        7.5    5.3   0.7    2.1  2  Androgen_recep  Androgen receptor


Domain annotation for each model (and alignments):
>> PIP5K  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -19.5  20.7         2   1.8e+04     183     183 ..     301     301 ..      41     465 .. 0.62
   2 !  318.7   6.2   3.1e-99   2.8e-95       2     273 ..     600     906 ..     599     907 .. 0.90

  Alignments for each domain:
  == domain 1  score: -19.5 bits;  conditional E-value: 2
                 - CS
       PIP5K 183 s 183
                 +
  CCD24139.1 301 T 301
                 0 PP

  == domain 2  score: 318.7 bits;  conditional E-value: 3.1e-99
                 SS-EEEE----SSS--EEEETTSSEEEEEE-HHHHHHHHHHHHHHHHHHTT-TT--S--EEEEEEEE.E.......TTEEEEEEEEE-SS-TTS--SEE CS
       PIP5K   2 ksalkelsseGkSgsffylteDkkfiiKtitksevkflrkllpeYyehvkenpnsLltrfyglhrvklk.......ggkkvrfvVmenlfptdkeiher 93 
                 k++l+el+s+GkSgsffy+++D+k+iiKti++se++ lr++l+eYy+hvk+npn+L+++fyglhrvk++       +++k++f+Vm+nlfp++++ih +
  CCD24139.1 600 KYILSELNSPGKSGSFFYYSRDYKYIIKTIHHSEHRHLRRHLEEYYNHVKNNPNTLICQFYGLHRVKMPisfqhkvNHRKIYFIVMNNLFPPHLDIHTT 698
                 689************************************************************************************************ PP

                 EEE-S--TT-S--.HHHHTSSS-E....EEHHHHHHHST.EEE-HHHHHHHHHHHHHHHHHHHHTTB-S-EEEEEEEB--------------------- CS
       PIP5K  94 yDLKGstvgReak.kkeeekkekt....lkDlDliekkeklklgkekreelleqlekDvefLeslnimDYSLLlGihnsekeekeekkesessssekes 187
                 +DLKGst+gR+++ ++e  +++k     lkDl++ e ++++++g+ k++ +l+ql+kDv +L++ln+mDYSLLlGih+ +k+++    es s  +e+++
  CCD24139.1 699 FDLKGSTWGRYTEvNHELMETDKFyrpvLKDLNWLELEKRINFGPVKKKMFLDQLKKDVTLLSKLNTMDYSLLLGIHDINKNQEFLIPESGSIFDEEHQ 797
                 *************544443333336667************************************************99997776655544443333333 PP

                 ------.......................-----------------SEEEEESSSSEEEEEEEEE----B----------------------TTHHHHH CS
       PIP5K 188 ekseee.......................aseeeeeseeeedeegekakeensedgkevyylgiIDiLqkynlkKklehalkslkkdkksisavpPkeY 263
                 ++  ++                       ++++   + ++++e+g  +++e + dgke+yy+giID+L++y++ Kkle +++sl++d+k++savpPk Y
  CCD24139.1 798 QQPLQQqvqhqqqkqrmsvmvgtggsnipMNKTVVPHYFKQNEGGIISSNELNMDGKEIYYVGIIDCLTNYSIMKKLEAFWRSLNHDPKTVSAVPPKDY 896
                 3333335677888999999********9999999999************************************************************** PP

                 HHHHHHHHHH CS
       PIP5K 264 aeRFlkfiek 273
                  +RF+kfiek
  CCD24139.1 897 GDRFYKFIEK 906
                 ********97 PP

>> Androgen_recep  Androgen receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1    0.0018        16     193     221 ..     438     466 ..     390     482 .. 0.66
   2 ?    5.3   0.7   0.00084       7.5     191     221 ..     795     824 ..     771     848 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0018
  Androgen_recep 193 qqqehhhqqhqhqqqqqqeaavvedsssg 221
                      qq+hhh++h+h  + ++++ +  +  + 
      CCD24139.1 438 IQQHHHHHHHHHSYKSKNKTNMNMGKPGD 466
                     35666666666666555555554444433 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.00084
  Androgen_recep 191 qqqqqehhhqqhqhqqqqqqeaavvedsssg 221
                     + qqq   +qq qhqqq+q+ + +v  ++s 
      CCD24139.1 795 EHQQQ-PLQQQVQHQQQKQRMSVMVGTGGSN 824
                     34444.4789999999998888777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1419  (0.0791455); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.79u 0.25s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 6185.05
//
Query:       CCD24140.1  [L=723]
Description: hypothetical protein NDAI_0C04810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-15   54.5   4.8    9.6e-15   54.5   4.8    2.2  2  W2               eIF4-gamma/eIF5/eIF2-epsilon
      2e-10   40.0  24.2    0.00027   20.6   3.1    4.9  5  Hexapep          Bacterial transferase hexapeptide (six repea
    3.6e-09   36.6   0.0    6.7e-09   35.7   0.0    1.5  1  NTP_transferase  Nucleotidyl transferase
    3.4e-07   28.8   1.0    3.4e-07   28.8   1.0    2.0  2  DUF4954          Domain of unknown function (DUF4954)
    8.9e-05   21.6   7.1      0.009   15.0   1.3    2.2  2  Fucokinase       L-fucokinase
     0.0066   16.8   0.0      0.012   16.0   0.0    1.3  1  NTP_transf_3     MobA-like NTP transferase domain
  ------ inclusion threshold ------
      0.094   12.6   0.2       0.47   10.3   0.0    2.1  2  CTP_transf_3     Cytidylyltransferase


Domain annotation for each model (and alignments):
>> W2  eIF4-gamma/eIF5/eIF2-epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.4       2.3   5.9e+03      64      79 .]     536     551 ..     507     552 .. 0.59
   2 !   54.5   4.8   3.7e-18   9.6e-15      18      79 .]     656     718 ..     636     718 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.3
          W2  64 pfvewLeeaeeeeeee 79 
                  + +  e  ++eeeee
  CCD24140.1 536 SMYTDFEGNDSEEEEE 551
                 4445555555555554 PP

  == domain 2  score: 54.5 bits;  conditional E-value: 3.7e-18
          W2  18 e..llkllakilkaLYdeDileEeailkWgekkskaekgkkkvrkkaepfvewLeeaeeeeeee 79 
                 +  +  +l   l+ LYd+D+leE++i+kW++++s++    +++++ +++++ewL++a+ee+++e
  CCD24140.1 656 FekPDLVLFGALNSLYDNDVLEEDVIYKWWDEVSDDPRY-EEAKRLTARWIEWLKTADEESSSE 718
                 34477889999***********************97655.8*********************97 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.2   3.2e+03       1      14 [.     128     141 ..     128     142 .. 0.68
   2 !   16.5   0.1     2e-06    0.0051      13      35 ..     332     354 ..     327     355 .. 0.91
   3 !   20.6   3.1     1e-07   0.00027       4      31 ..     347     373 ..     347     373 .. 0.91
   4 !   10.2   0.4   0.00019       0.5       6      22 ..     377     393 ..     377     395 .. 0.92
   5 !   13.7   2.2   1.5e-05     0.039       7      34 ..     395     422 ..     394     424 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
                 TEEEETTEEE-TTE CS
     Hexapep   1 stvIGsnvlIgpfa 14 
                 +t++G+ vlI   +
  CCD24140.1 128 GTITGDFVLISGDV 141
                 57888888886655 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2e-06
                 TEEEETTEEE-TTEEEETTEEEE CS
     Hexapep  13 faviggnVkIGdnvkIgagvvig 35 
                  +v++  +kIG+n+ Ig+g+ ig
  CCD24140.1 332 DVVLAQSCKIGRNTAIGSGTKIG 354
                 799*****************997 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 1e-07
                 EETTEEE-TTEEEETTEEE-TTEEEETT CS
     Hexapep   4 IGsnvlIgpfaviggnVkIGdnvkIgag 31 
                 IGs+++Ig  a++ +n++IG+n+ Ig++
  CCD24140.1 347 IGSGTKIG-EATVIENCIIGRNCQIGEN 373
                 9*******.77777************86 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00019
                 TTEEE-TTEEEETTEEE CS
     Hexapep   6 snvlIgpfaviggnVkI 22 
                 sn++I+ ++vi +n++I
  CCD24140.1 377 SNSFIWDNSVINNNCTI 393
                 699*************9 PP

  == domain 5  score: 13.7 bits;  conditional E-value: 1.5e-05
                 TEEE-TTEEEETTEEE-TTEEEETTEEE CS
     Hexapep   7 nvlIgpfaviggnVkIGdnvkIgagvvi 34 
                 +++I  ++ ig nV+I d+++Ig  v i
  CCD24140.1 395 HSIIATGSEIGQNVTINDGCIIGFDVII 422
                 678899999*************988877 PP

>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0   2.6e-12   6.7e-09       2     133 ..      31     161 ..      30     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 2.6e-12
                      EEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGT.....SEEEEEEESS--BGGHHH CS
  NTP_transferase   2 avILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfg.....vevlialepegkgtAdAv 90 
                      a+IL   + t+++PLt t +  l+p ++  +li++tl+ la+sg++e++++++  h+  ++e++++ + ++      +v+ ++ pe +   d +
       CCD24140.1  31 AIILTDSYETKFMPLTATKPRCLLPLANV-PLIEYTLEFLAKSGVDEVYLICS-SHASQIDEYIANSK-WNlpwspFKVSTVMSPEARSVGDVM 121
                      688888888********************.*****************999998.56667788888765.7777888888888888888888877 PP

                      HHTHHHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTT CS
  NTP_transferase  91 alaaelledeksdelvlvLggDhlikdayeeavkkaiekaakg 133
                      +   +    +     ++ ++gD++++ +++++++++++ ++k 
       CCD24140.1 122 RDLDNRGTITG---DFVLISGDVVTNVDFSKMFEFHKKMRSKD 161
                      76666555555...499*******************9987764 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   1.0   1.3e-10   3.4e-07     225     273 ..     341     389 ..     327     394 .. 0.89
   2 ?    1.5   0.5     0.025        63     220     256 ..     387     424 ..     385     431 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 1.3e-10
     DUF4954 225 iledfiissGskikdgavisrcfvGqavklkkqfsaedsllfaNcqgen 273
                 i +++ i sG+ki +++vi++c++G++++++++ ++++s++ +N+ ++n
  CCD24140.1 341 IGRNTAIGSGTKIGEATVIENCIIGRNCQIGENIKLSNSFIWDNSVINN 389
                 568999**************************************99876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.025
     DUF4954 220 iGegViledfiissGskikdgavisr.cfvGqavklkk 256
                 i ++ ++e +ii +Gs+i + ++i++ c++G  v ++ 
  CCD24140.1 387 INNNCTIEHSIIATGSEIGQNVTINDgCIIGFDVIIDS 424
                 66777888899999999999988875589998887775 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.5   9.2e-05      0.24     278     312 ..     344     378 ..     308     383 .. 0.81
   2 !   15.0   1.3   3.5e-06     0.009     278     336 ..     384     440 ..     375     447 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.2e-05
  Fucokinase 278 nSvlessvsvgegsviehsslkgnvsigsnsivsg 312
                 n+ + s+ ++ge +vie++ ++ n++ig+n  +s+
  CCD24140.1 344 NTAIGSGTKIGEATVIENCIIGRNCQIGENIKLSN 378
                 788999***********************988887 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.5e-06
  Fucokinase 278 nSvlessvsvgegsviehsslkgnvsigsnsivsglelesseeslelpddtilqtlslk 336
                 nSv++++++++ + +   s++++nv+i  ++i+ g ++  +++ +++p+ t + ++++k
  CCD24140.1 384 NSVINNNCTIEHSIIATGSEIGQNVTINDGCII-GFDVIIDSD-MNIPKGTKISSTPVK 440
                 8999999999999999999999***********.888888766.99*****99999997 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.6e-06     0.012      15      58 ..      50      95 ..      45     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.6e-06
                  THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHC..HHHHHHTTC CS
  NTP_transf_3 15 dKallplggkpllervldalraagvdevvvvggde..evlaalarl 58
                  + +llpl++ pl+e++l+ l+++gvdev++++ ++  ++ +++a +
    CCD24140.1 50 PRCLLPLANVPLIEYTLEFLAKSGVDEVYLICSSHasQIDEYIANS 95
                  789****************************988522566655544 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00018      0.47      18      51 ..      53      85 ..      49     181 .. 0.82
   2 ?   -0.7   0.1      0.44   1.1e+03      99     138 ..     510     552 ..     485     625 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00018
                  GSEETTEEHHHHHHHHHHHTTTTSEEEEEES-HH CS
  CTP_transf_3 18 lldlggkpliayvleaalkskafekvivaTDsee 51
                  ll+l++ pli+y+le + ks++ ++v++ ++s+ 
    CCD24140.1 53 LLPLANVPLIEYTLEFLAKSGV-DEVYLICSSHA 85
                  899******************9.99888777763 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.44
                   T-TT--HHHHHHHHHHHHHSTTS...SEEEEEEETTSHHHHTS CS
  CTP_transf_3  99 dnPllqeevikkaietlkenqed...ylstlvkkvgkeeevln 138
                   ++ +l+ e+i+   +++k++      +++t+++  ++eee ++
    CCD24140.1 510 EELCLSDESISSRTKRVKKKRTMstnSMYTDFEGNDSEEEEED 552
                   5666666666666666666643355555555555444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 4673.42
//
Query:       CCD24141.1  [L=191]
Description: hypothetical protein NDAI_0C04820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-48  163.3   0.0      4e-48  163.1   0.0    1.0  1  Ras       Ras family
    1.3e-17   64.1   0.0    1.9e-17   63.6   0.0    1.2  1  Roc       Ras of Complex, Roc, domain of DAPkinase
    4.1e-06   26.4   0.0    5.4e-06   26.0   0.0    1.1  1  Arf       ADP-ribosylation factor family


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.1   0.0   6.6e-52     4e-48       1     159 [.       5     175 ..       5     178 .. 0.97

  Alignments for each domain:
  == domain 1  score: 163.1 bits;  conditional E-value: 6.6e-52
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeik 98 
                 K+v  Gd+++GKt+ll+++++++F+ +y +T+ +d+y  ++++ +  ++l ++DTAGqe++++lr+l+y +++++l+++++ s  sfenvk kw+ e++
  CCD24141.1   5 KVVCCGDGSIGKTCLLISYTTNQFPADYVPTV-FDNYAVTVMIGDVPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPPSFENVKeKWFPEVH 102
                 89******************************.**********************************************************9******* PP

                 HHSTTTSEEEEEEETTTGGG............G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras  99 rvaeenvpivLvGnKvDlee............kravsteegeelakelg.lkfletSAktnenveeafeellre 159
                 ++++  vp+++vG+++Dl++             + ++ ++ge+la+el+ +k++e+SA t+ +++++f+e++ +
  CCD24141.1 103 HHCP-GVPCLIVGTQIDLRDdkviieklrrqkLQPITPAQGERLARELKaVKYVECSALTQRGLKNVFDEAIVA 175
                 ****.7***********************998899**************9******************998765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   3.1e-21   1.9e-17       1     120 []       5     119 ..       5     119 .. 0.88

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 3.1e-21
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCH. CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenl. 95 
                 Kvv++Gd+++GKt+ll ++++++f  ++ +t+  +++ + +  i        v  ++l ++DtaGqe+++ l+pl + + +++++++      s+en+ 
  CCD24141.1   5 KVVCCGDGSIGKTCLLISYTTNQFPADYVPTVFDNYAVTVM--IGD------V-PYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSvisPPSFENVk 94 
                 9*******************************999876533..332......3.489****************************99875455788873 PP

                 HHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  96 keWlkelkkvagkspvilvgnkiDl 120
                 ++W+ e++++++  p+++vg++iDl
  CCD24141.1  95 EKWFPEVHHHCPGVPCLIVGTQIDL 119
                 68*********************95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   9.1e-10   5.4e-06      14     169 ..       3     170 ..       1     175 [. 0.83

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 9.1e-10
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEE.EEEETTE..EEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTigfnve.eleiknl..kftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                  l+++  G  + GKt +l  ++++++    vPT+  n   +++i ++  ++ ++D  Gqe   +l    +++td+ + +  +     +e+ ke+    +
  CCD24141.1   3 TLKVVCCGDGSIGKTCLLISYTTNQFPAdYVPTVFDNYAvTVMIGDVpyTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPPSFENVKEKWFPEV 101
                 678999999999*************96549****9886438999987336779********9999999************************9876655 PP

                 TSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS.........SSSSEEEEEEBTTTTBTHHHHHH CS
         Arf 109 eeeelkevallvlaNKqDlpealseeelrellgleelk.........gkrkleiqkcsavkgeglkegle 169
                  +++   v+ l+++ ++Dl+++    e  +  +l+ ++           + ++ ++csa++++glk+ ++
  CCD24141.1 102 -HHHCPGVPCLIVGTQIDLRDDKVIIEKLRRQKLQPITpaqgerlarELKAVKYVECSALTQRGLKNVFD 170
                 .45688**************998776666666677655666666544667788899**********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1426.51
//
Query:       CCD24142.1  [L=559]
Description: hypothetical protein NDAI_0C04830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   7.1e-153  509.8  16.0   8.1e-153  509.6  16.0    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  509.6  16.0  4.5e-157  8.1e-153       1     488 [.      36     546 ..      36     549 .. 0.97

  Alignments for each domain:
  == domain 1  score: 509.6 bits;  conditional E-value: 4.5e-157
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 +a++vk++lGP G+dKmlv+++g+ +vTnDGatil+ l+++hPa k+lve+a++qd+e+GDGTt+vvi+a+eLl++a +l+++++hpttii g++ al 
  CCD24142.1  36 VANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALR 134
                 689************************************************************************************************ PP

                 HHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCS....EECSCCCEECCCCEECECTTSEEESEEEESS--SSTT CS
  Cpn60_TCP1 100 kaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieene....keldlgrikvvkieggsledselveGlvldkgvlspd 194
                 +a+++++e+  ++++ +  +e+L+++a+ts+ssk++ ++++++s++vvd+++++++++    +++ ++ ++++k +g+s ++s lv+G++l+++v+s+ 
  CCD24142.1 135 EAIRFINEV-LSLDVASLGKETLINIAKTSMSSKIIGSDSDFFSNMVVDSLLAVKTQNskgeTKYPVKAVNILKAHGKSATESVLVNGYALNCTVASQA 232
                 ******999.99***9***********************************88888888*9999*********************************** PP

                 SSCEE..ECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHH CS
  Cpn60_TCP1 195 mpkkl..enakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdlerlak 291
                 mp+++   n+k+++ld  L+ ++  + ++++++d+e+le+++k+e  +++e+++kii+sg++vv+++kgiddl+l+ +++++i+a+rr+kk+dl+r+a+
  CCD24142.1 233 MPRHIagGNVKIACLDLNLQKARMAMGVQINIEDPEQLEEIRKREAGIILERVQKIIDSGAQVVLTTKGIDDLCLKEFVEAKIMAVRRCKKEDLRRIAR 331
                 *****999******************************************************************************************* PP

                 HHT--EBSCGGGGGCGC......-EEEEEEEECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHH CS
  Cpn60_TCP1 292 atGatavssledltpee......lGtakkveeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelela 384
                 atGat+v+s+++l+ +e      lG +++v ++k+++++++++++++++++++i+lrga+d+ lde+er+i+d+l+vvk+++e++ vvpGGG++e++l 
  CCD24142.1 332 ATGATLVNSMSNLEGDEtfessyLGVCSEVVQAKFSDDECILVKGTSKHSSSSIILRGANDYSLDEMERSIHDSLCVVKRTLESGTVVPGGGCVETALN 430
                 **********8888877788888**************************************************************************** PP

                 HHHHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHH............HTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHH CS
  Cpn60_TCP1 385 kklkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlaklraah............nkgekelgidvesgeiidlveagvvDplkvkrqalk 471
                  +l+++a++v ++eqlai  fa AL+vipktLa Na  d+ e++aklr+ h            +k+  ++g+d+ +g+i+d v+agv++p+ +k ++lk
  CCD24142.1 431 IYLDNFATTVGSREQLAIAEFAAALLVIPKTLAVNAAKDSSELIAKLRSYHaasqlakpedikKKNYQNYGLDLIKGKIVDEVHAGVLEPTIAKIKSLK 529
                 ***************************************************88888888888744547******************************* PP

                 HHHHHHHHHHCEEEEEX CS
  Cpn60_TCP1 472 sAteaastiLrideiik 488
                 sA ea   iLrid +i 
  CCD24142.1 530 SALEACIAILRIDTMIT 546
                 ***************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3961.32
//
Query:       CCD24143.1  [L=948]
Description: hypothetical protein NDAI_0C04840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-11   43.3   0.2      2e-11   43.3   0.2    2.4  2  Fungal_trans_2  Fungal specific transcription factor domain
      2e-07   31.0  12.9      3e-07   30.4  12.9    1.3  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.7   8.9         2   1.8e+04     206     257 ..     359     407 ..     346     437 .. 0.60
   2 !   43.3   0.2   2.2e-15     2e-11       2     131 ..     650     785 ..     649     802 .. 0.84

  Alignments for each domain:
  == domain 1  score: -7.7 bits;  conditional E-value: 2
  Fungal_trans_2 206 Larekrsarkdseleplsileeaseleqrll.swkprssdlepdldeterass 257
                     L+++ + + ++     ++++ + ++l+++l+ ++k++++ + + + ++++ ++
      CCD24143.1 359 LQQHQQIQLQQ----NQQYQLQQQQLQEQLQeQLKSQQKHIIEAQLHHHQQQQ 407
                     33333333444....55555555555555555555555555555555554444 PP

  == domain 2  score: 43.3 bits;  conditional E-value: 2.2e-15
  Fungal_trans_2   2 lldyyldnvapllspvpes.snpfrkvllplalsnkallhallalsafhlqskgpkdslereakrykslalkelqealaelsstlsrnekykdiL 95 
                     l+++y+++v p+++  + s  + + k + +la   ++l+h++lalsa+hl+   ++    + +  ++  al++l+ea  e s+  +     ++++
      CCD24143.1 650 LFHHYCTEVWPTITAAKVSgPEVWSKAIPKLAFDFPFLMHSILALSATHLAR-AEPGL-GQYVSTHRLDALRLLREAVLEISEENT-----DALV 737
                     89************999999******************************54.44553.999************************.....9999 PP

  Fungal_trans_2  96 aaiLllcsie...issgdvsd.........wrvhLeaatsliksrggs 131
                     a+ L+l++      +s ++s+         w  h ++a  +++  +++
      CCD24143.1 738 ASALILIMDSlanAASPTDSSpnnilspsaWVFHVKGAATILTAVWPL 785
                     999999988533333333333555666777999*****9999988887 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4  12.9   3.4e-11     3e-07       2      38 ..      62      98 ..      61     100 .. 0.88

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 3.4e-11
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysessk 38
                +CdnC+k++vKCd+ kP+C++C   +l+C++ + + +
  CCD24143.1 62 GCDNCKKRRVKCDEVKPSCKKCTNMQLTCVYSPLQPR 98
                7*****************************5555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (948 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4006  (0.223437); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.26u 0.36s 00:00:01.62 Elapsed: 00:00:00.53
# Mc/sec: 5377.33
//
Query:       CCD24144.1  [L=356]
Description: hypothetical protein NDAI_0C04850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-37  127.0   0.1    5.7e-37  127.0   0.1    2.1  3  Aha1_N    Activator of Hsp90 ATPase, N-terminal
    3.5e-13   49.9   0.1      6e-13   49.1   0.1    1.4  1  AHSA1     Activator of Hsp90 ATPase homolog 1-like protein
  ------ inclusion threshold ------
      0.039   14.3   0.9      0.083   13.2   0.9    1.5  1  DUF3362   Domain of unknown function (DUF3362)
       0.84    9.6   3.8       0.78    9.7   0.3    2.7  2  LBP_C     Lacto-N-biose phosphorylase C-terminal domain


Domain annotation for each model (and alignments):
>> Aha1_N  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.0   0.1   1.3e-40   5.7e-37       1     136 [.      14     145 ..      14     146 .. 0.94
   2 ?   -2.0   0.4      0.87   3.9e+03      21      34 ..     175     187 ..     158     214 .. 0.47
   3 ?   -3.1   0.0       1.8   8.2e+03      55      64 ..     316     325 ..     298     338 .. 0.72

  Alignments for each domain:
  == domain 1  score: 127.0 bits;  conditional E-value: 1.3e-40
      Aha1_N   1 eKdatpWskerlkelllslklene.eaksvkitevksveGdasvnqrKgKvifiydlklklewegtvkkedgkkvkGeieipelssenddddyeievsv 98 
                 +K+++ W++++++e+l +l+  ++ +a+++++t+++s+eGd++vnqrKgKvi ++dl++++ + g+v   d+++++G+i++pe++ +++ ddy++++s+
  CCD24144.1  14 DKNCITWARKYFEEHLIGLNTGSDeKAHYCEVTSISSMEGDCEVNQRKGKVISLFDLNIVMMIRGQV---DDESFEGSISVPEVAFDSAIDDYQFDISI 109
                 7********************99966669*************************************8...***************************** PP

      Aha1_N  99 kkdeekkekqklkelikskgvpklreklakfvkeLkee 136
                 +k+  +++ +++k  i+++++p+lr+k+ +f k+L+ +
  CCD24144.1 110 YKE--TSKLNEIKPKIRENLIPQLRDKFFQFGKDLLVT 145
                 *95..445668************************865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.87
      Aha1_N  21 leneeaksvkitev 34 
                 + +++a+ ++++++
  CCD24144.1 175 SSKKQAQ-AQTSQI 187
                 3333222.222222 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.8
      Aha1_N  55 dlklkleweg 64 
                 + k+k++w+g
  CCD24144.1 316 ETKVKVSWTG 325
                 5566666665 PP

>> AHSA1  Activator of Hsp90 ATPase homolog 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.1   1.3e-16     6e-13       1     121 [.     224     347 ..     224     351 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 1.3e-16
                 SS-HHHHHHHHH-HHHHHHH........EEEEEEEE--STTEEEEEEETTTSEEEEEEEE..EEEEETTTEEEEEEEEETSETEEEEEEEEEEEE..ET CS
       AHSA1   1 dapperVfraltdpellkrW........ftlteaemdlrpGgkfrlrdspdgkefgnege..ylevvpperlvytwrledepeeeestvtielee..eg 87 
                 ++p+++++r++++++++ +W            + + dl  G kf+l        fg++++    e + +++lv++wrl+d+++++ s++++e+ e  e 
  CCD24144.1 224 NVPASELYRTFLEKQRVMAWsrsmirypSGENSSSKDLSIGEKFEL--------FGGNVTseLVESKLNQKLVFNWRLNDWRSGNTSRLELEFHEskEY 314
                 589******************9997765555555666688******........9999999999*******************************5444 PP

                 TEEEEEEEEEEEEHCHHHHHHHHHHHHHHH.HHHH CS
       AHSA1  88 ggTrltlthtglprkqkeeegveeGweqsl.dqLk 121
                  +T++ +++tg+p +++++  v++++e+++ +++k
  CCD24144.1 315 HETKVKVSWTGIPIGEEDR--VRANFEEYYvRSIK 347
                 45****************9..9******9977776 PP

>> DUF3362  Domain of unknown function (DUF3362)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.9   1.8e-05     0.083      61     137 ..     130     206 ..     125     218 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.8e-05
     DUF3362  61 llreALkkmGredLiGngkkhLiptfqpkvdgkdsrqsarrknskagkdaakrasksksskrekagkvraqskkpqk 137
                  lr+   + G++ L+ +g   L+p  q ++  ++++q++  +ns+++k++a+ ++++ s+  + ++++++++k++++
  CCD24144.1 130 QLRDKFFQFGKDLLVTHGSDILLPEDQVNSSYTKQNQEKSFANSSSSKKQAQAQTSQISNDVKDSASTSNTKKETTT 206
                 588889999******************99777776777777777766665555555544433333333333333333 PP

>> LBP_C  Lacto-N-biose phosphorylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.45     2e+03      19      25 ..       1       7 [.       1      13 [. 0.81
   2 ?    9.7   0.3   0.00017      0.78      27      47 ..     201     221 ..     198     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.45
       LBP_C 19 lvViNNs 25
                ++ViNN 
  CCD24144.1  1 MAVINNP 7 
                68****5 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00017
       LBP_C  27 eeqtTtvytgdgkrfevtLep 47 
                 +++tTt++ ++g++ +++Lep
  CCD24144.1 201 KKETTTITSNSGNTASIHLEP 221
                 6789****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1952  (0.108874); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2548.12
//
Query:       CCD24145.1  [L=1350]
Description: hypothetical protein NDAI_0C04860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-11   43.6   6.4    3.7e-05   23.9   0.8    3.2  2  zf-C2H2       Zinc finger, C2H2 type
    1.4e-07   31.6   6.8    7.7e-07   29.3   3.7    2.9  2  zf-H2C2_2     Zinc-finger double domain
    2.8e-07   30.8   6.2     0.0089   16.8   1.0    3.2  2  zf-C2H2_4     C2H2-type zinc finger
     0.0038   17.6   5.2        1.5    9.3   0.1    3.2  3  zf-met        Zinc-finger of C2H2 type
     0.0073   16.6   1.0       0.42   11.0   0.2    3.0  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
       0.46   11.2   8.4        1.8    9.3   1.3    3.9  3  zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.8   1.2e-08   3.7e-05       1      23 []     116     138 ..     116     138 .. 0.98
   2 !   21.5   0.6   7.6e-08   0.00023       1      23 []     144     167 ..     144     167 .. 0.97

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.2e-08
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++C++C++ F r+++L+rH r+H
  CCD24145.1 116 FVCEICTRAFARQEHLVRHERSH 138
                 89********************9 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 7.6e-08
                 EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                 y C++C+k+F+r+++L rH ++ H
  CCD24145.1 144 YNCGICSKKFTRRDLLIRHAQKvH 167
                 89******************9999 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.096   2.9e+02      13      25 ..     114     126 ..     105     127 .. 0.77
   2 !   29.3   3.7   2.6e-10   7.7e-07       1      26 []     130     155 ..     130     155 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.096
   zf-H2C2_2  13 kpyeCplCdkaFk 25 
                 + + C+ C  aF+
  CCD24145.1 114 RLFVCEICTRAFA 126
                 459*********8 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 2.6e-10
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFkt 26 
                 +L+rH r+Ht+ekpy+C  C+k+F++
  CCD24145.1 130 HLVRHERSHTKEKPYNCGICSKKFTR 155
                 79**********************85 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.0     3e-06    0.0089       1      23 [.     116     138 ..     116     139 .. 0.96
   2 !   15.5   0.4   7.9e-06     0.024       1      24 []     144     167 ..     144     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f C+iC++ F ++++L rH ++h
  CCD24145.1 116 FVCEICTRAFARQEHLVRHERSH 138
                 89********************9 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 7.9e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkthH 24 
                 + C iC+k F++++ L rH +++H
  CCD24145.1 144 YNCGICSKKFTRRDLLIRHAQKVH 167
                 78********999999******99 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00051       1.5       1      23 [.     116     138 ..     116     139 .. 0.95
   2 !    9.3   0.1   0.00049       1.5       1      20 [.     144     163 ..     144     164 .. 0.90
   3 ?   -1.8   0.2       1.6   4.8e+03      11      20 ..     645     654 ..     644     654 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00051
      zf-met   1 fyCelCnvtfnsesqlksHlqGK 23 
                 f Ce+C + f  + +l  H +++
  CCD24145.1 116 FVCEICTRAFARQEHLVRHERSH 138
                 78*******************98 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00049
      zf-met   1 fyCelCnvtfnsesqlksHl 20 
                 + C +C ++f+ +  l+ H 
  CCD24145.1 144 YNCGICSKKFTRRDLLIRHA 163
                 67***********9999996 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.6
      zf-met  11 nsesqlksHl 20 
                 + e+++ sH+
  CCD24145.1 645 YFEKHFLSHY 654
                 57999****8 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.2   0.00014      0.42       2      24 ..     116     138 ..     115     140 .. 0.95
   2 ?    3.0   0.0     0.044   1.3e+02       2      15 ..     144     157 ..     143     162 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  f C++C + F  ++ l  H++S+
   CCD24145.1 116 FVCEICTRAFARQEHLVRHERSH 138
                  78********************6 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.044
                  CBBTTTTBBBSSHH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksen 15 
                  + C +C+K F    
   CCD24145.1 144 YNCGICSKKFTRRD 157
                  89********7665 PP

>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3    0.0072        22      67     122 ..      82     136 ..      58     140 .. 0.70
   2 ?    9.3   1.3   0.00059       1.8       1      95 [.     118     206 ..     118     218 .. 0.65
   3 ?   -0.9   0.2      0.81   2.4e+03      52      94 ..     731     769 ..     706     779 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0072
  zf-C2H2_3rep  67 qkknlsasedssqklelsksasvennsenesgvrkfvcrfcGlkfdllpdlGrhhq 122
                   + +n + +  +++k+++   +   n +  ++ vr fvc +c   f     l rh +
    CCD24145.1  82 T-NNNNMNARVNKKMKELPENLRLNGKTPSGKVRLFVCEICTRAFARQEHLVRHER 136
                   2.2223333345555555555555777888999************99999999976 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00059
  zf-C2H2_3rep   1 caicldsftnkkvlethvqerhhvqfveqclllqcipcgshfgnaeelwlhvlsvhpsdfklskvaqkknlsasedssqklelsksasvennsen 95 
                   c ic  +f+ +  l  h  er h +     +  +c  c  +f+  + l  h + vh+ ++  + +a k  ls++ ++s+  ++s+++  +++s++
    CCD24145.1 118 CEICTRAFARQEHLVRH--ERSHTK----EKPYNCGICSKKFTRRDLLIRHAQKVHNGNVVDTVAALKAPLSSTASASTSRRKSSISNKKTKSNR 206
                   67777777777766655..555543....34578999*******************999988888776666655544444444433333333333 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.81
  zf-C2H2_3rep  52 vlsvhpsdfklskvaqkknlsasedssqklelsksasvennse 94 
                   vlsv+  ++k+ ++++++n+++++dss+ ++   +a+ +nn+e
    CCD24145.1 731 VLSVYL-EVKKENQNNHNNINKNNDSSSSSS---TAAPNNNTE 769
                   444443.344444444445554444443333...222333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1791  (0.099894); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.48
# Mc/sec: 8513.31
//
Query:       CCD24146.1  [L=1241]
Description: hypothetical protein NDAI_0C04870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-41  141.6   0.2    3.2e-41  140.5   0.2    1.6  1  Rad9_Rad53_bind  Fungal Rad9-like Rad53-binding
      3e-09   37.1   0.1    1.3e-08   35.1   0.1    2.2  2  BRCT             BRCA1 C Terminus (BRCT) domain
    9.8e-07   29.1   0.1    1.7e-05   25.2   0.0    3.1  2  BRCT_2           BRCT domain, a BRCA1 C-terminus domain
    3.9e-05   23.5   0.0    0.00013   21.8   0.0    1.9  1  RTT107_BRCT_5    Regulator of Ty1 transposition protein 107 B


Domain annotation for each model (and alignments):
>> Rad9_Rad53_bind  Fungal Rad9-like Rad53-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5   0.2   7.1e-45   3.2e-41       1     129 []     727     855 ..     727     855 .. 0.98

  Alignments for each domain:
  == domain 1  score: 140.5 bits;  conditional E-value: 7.1e-45
  Rad9_Rad53_bind   1 dssvltkkdvifeeavWvqq.aklkyYpakilskgtsqdkvlvkfeegavevkkedvkyLdlriGdkvkvdmktyvvrglekkisadekvirci 93 
                      d + l+++d+ fe+a+W+q+  ++++Yp+ +l k++s+d+++v f +g+ e k edv+yLd+riGd v++++++yvv+gl+++ s+d ++irc+
       CCD24146.1 727 DTQYLSRNDIQFENAIWSQYtLNYQFYPGILLPKEISKDRCWVLFYTGKEESKREDVYYLDIRIGDTVNWNGNKYVVTGLNCE-SHDPNIIRCV 819
                      56889***************99*************************************************************.********** PP

  Rad9_Rad53_bind  94 rGydtvllkkvkssGklgkeelikplseiyldleeW 129
                      rGydtv+++k+  sG lgk+++ikpls i++dl eW
       CCD24146.1 820 RGYDTVYMRKKTVSGGLGKRTFIKPLSVITIDLDEW 855
                      ************************************ PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.1   2.9e-12   1.3e-08       3      79 .]     944    1057 ..     942    1057 .. 0.77
   2 ?   -3.4   0.0       2.9   1.3e+04      13      35 ..    1185    1213 ..    1178    1214 .. 0.70

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 2.9e-12
                  TTTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEE........................................ESSCSTTSSEEEESSS....... CS
        BRCT    3 ellfhgckfvitgvldnftrdeleelikehGGkv........................................ttevskktthlvvgep....... 52  
                   ++f++c fv+  +    ++ el  li+++GGkv                                        +              p       
  CCD24146.1  944 TKIFDKCLFVL--SNIYDNKAELCHLIESNGGKVielgfaslfdnptvastmplgedeniilresqmhlewnpnS--------------Pfkdykfa 1024
                  68*********..666669*****************999888888888876666666666666655555554433..............04444555 PP

                  ......HSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   53 ......esrslkylealklnipivheewlldci 79  
                        ++rslkyle+l+l++pi+h++++ +c+
  CCD24146.1 1025 cllakrHLRSLKYLETLALGWPILHWKFIHKCL 1057
                  5555557*************************7 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.9
                  E.....EESTSSHHHHHH.HHHHHHTTCE CS
        BRCT   13 i.....tgvldnftrdel.eelikehGGk 35  
                  +     tg+ ++   de+ +++ +++GG+
  CCD24146.1 1185 VymsddTGKISSSLLDEArKDISEKFGGS 1213
                  45566677777777788879999999996 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.42   1.9e+03      30      55 ..     326     359 ..     312     395 .. 0.69
   2 !   25.2   0.0   3.7e-09   1.7e-05       2      79 ..     944    1063 ..     943    1069 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.42
      BRCT_2  30 knGGevvetitsavyiviaesneee........l 55 
                 +n Gevv+ ++++   v+ e++ee          
  CCD24146.1 326 SNPGEVVDIENDCSLQVVKEKEEEGenegddeeI 359
                 6789999999999888888888777555544440 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 3.7e-09
      BRCT_2    2 sklFeglrFYindaepspsreklkklIeknGGevveti.....................................tsavyiviaesneee....... 54  
                  +k+F+ + F +++    +++++l +lIe+nGG+v e                                                             
  CCD24146.1  944 TKIFDKCLFVLSN--IYDNKAELCHLIESNGGKVIELGfaslfdnptvastmplgedeniilresqmhlewnpnsP-------------Fkdykfac 1025
                  689********44..446****************777777778877888888998777777755555555555440.............15555555 PP

      BRCT_2   55 .............laekrkrrvvspkyIkdCikkgkll 79  
                               ++   + +++++k+I  C+k++kll
  CCD24146.1 1026 llakrhlrslkylETLALGWPILHWKFIHKCLKNNKLL 1063
                  55555556799999999999*****************8 PP

>> RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.8e-08   0.00013      51      95 ..    1021    1065 ..     998    1070 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.8e-08
                     CT-SEEE-SS---SHHHHHHCCCTTEEE-CHHHHHHHHHTS---S CS
  RTT107_BRCT_5   51 kkcntliApkilRTeKFLksLskapkilspdfiedvLkkkklldl 95  
                      k  +l A + lR  K+L++L+ +  il+ +fi ++Lk++kll  
     CCD24146.1 1021 YKFACLLAKRHLRSLKYLETLALGWPILHWKFIHKCLKNNKLLLN 1065
                     57889*********************************9999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1603  (0.0894082); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.45
# Mc/sec: 8290.56
//
Query:       CCD24147.1  [L=405]
Description: hypothetical protein NDAI_0C04880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-66  224.9  10.7    1.8e-66  224.3  10.7    1.3  1  Septin           Septin
    0.00016   21.7   1.2      0.001   19.2   1.2    2.3  1  MMR_HSR1         50S ribosome-binding GTPase
    0.00095   19.1   1.3      0.011   15.6   0.0    2.9  3  RsgA_GTPase      RsgA GTPase
     0.0045   17.0   0.5      0.013   15.5   0.3    2.1  1  Dynamin_N        Dynamin family
     0.0057   16.2   0.0      0.011   15.3   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
     0.0058   17.1   0.6      0.032   14.8   0.0    2.3  2  ABC_tran         ABC transporter
     0.0075   16.7   0.0      0.036   14.5   0.0    2.2  2  RNA_helicase     RNA helicase
  ------ inclusion threshold ------
      0.011   16.0   0.0      0.035   14.4   0.0    1.8  2  AAA_22           AAA domain
      0.012   15.9   0.0      0.032   14.4   0.0    1.8  1  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.018   14.4   0.0      0.035   13.5   0.0    1.4  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.022   13.8   0.2       0.09   11.9   0.0    2.0  2  MCM              MCM P-loop domain
      0.023   14.7   0.0      0.048   13.7   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
      0.033   14.6   0.0      0.063   13.6   0.0    1.4  1  AAA_16           AAA ATPase domain
      0.035   13.8   0.0      0.076   12.7   0.0    1.6  1  AAA_24           AAA domain
      0.069   12.8   0.0       0.13   11.9   0.0    1.4  1  Sigma54_activat  Sigma-54 interaction domain
      0.071   12.9   0.0       0.17   11.7   0.0    1.6  1  AAA_29           P-loop containing region of AAA domain
      0.072   13.0   0.0       0.14   12.0   0.0    1.5  1  NACHT            NACHT domain
      0.092   11.8   0.0       0.16   11.0   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
       0.44   10.1   4.7       0.94    9.0   0.1    2.5  2  GTP_EFTU         Elongation factor Tu GTP binding domain


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.3  10.7   1.9e-69   1.8e-66       2     277 ..      21     334 ..      20     338 .. 0.87

  Alignments for each domain:
  == domain 1  score: 224.3 bits;  conditional E-value: 1.9e-69
                 EEEEEEEEEEBTTSSCCCCCCTTSSSS----......................--------------S-EEEEEEEEETTCEEEEEEEE---BSSSSSH CS
      Septin   2 gieftlmvvGesglGkttlintlfetdliee......................ekleeasekkkktveikkkkvvieedgvklnltviDtpgfGdavdn 78 
                  i++++++ Ge g+Gk+t++n l+ +++  +                         e++ + ++kt++ik+ ++  ++    + l +   +gfGd+++n
  CCD24147.1  21 AIHLNVLLLGETGIGKSTFLNNLCLQHVDLNetnnttttkydastykddfiyeIDNESPMKLITKTIQIKEDEQNDNGGVPIISLKINLFQGFGDKINN 119
                 689*********************987654457999***********99996533455666777777777776665555555778887889******** PP

                 HCCCHHHHHHHHHHHHHHHHHCTSS--..S..S-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHT CS
      Septin  79 skswepiveyideqfeeylreesklkR..k..kivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleee 173
                    +e i +++ ++f++yl+ee ++kR  +  +++D+RvH+c+yfi+Pt++glk++d+++mk++++ vn+iPviaK+D lt +El+ +K+ i+++++e+
  CCD24147.1 120 LLGFEDIRKFLISKFDNYLKEEIQIKRnfNklEKIDERVHVCIYFIKPTSKGLKEFDIKMMKNIHDIVNIIPVIAKSDLLTVKELELNKNLIMKDIQEN 218
                 **************************954223578**************************************************************** PP

                 T--------SSSS-..........SCCHHHHHHHHHHC-SEEB-SSSSE.EEE.SSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHH CS
      Septin 174 eikiyklpdeeede..........deeakelseklkeslPfaivgsnel.iek.kgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevte 260
                 +i+i+++ d + d+          +++ + ++ k+k  lPf +v s+e  + + +gk  + R   W  + +e+++ sdF+ L++++l +hl++ k++t+
  CCD24147.1 219 HIEIFDFKDDKLDDillflqgkenKKKSEYAEDKIKDLLPFNLVCSEERhVGQdDGKLYHVRDHGWSKLIIEDKTTSDFIFLKSIILGSHLQEFKDITN 317
                 ******88888888999999876433334456789********999875155579******************************************** PP

                 HTHHHHHHHHHH-XXXX CS
      Septin 261 ellYetyRseklsklke 277
                 +llYe+yR++kls++++
  CCD24147.1 318 DLLYENYRTKKLSENEI 334
                 ************99875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   1.2   1.1e-06     0.001       2      42 ..      26      66 ..      25     202 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.1e-06
                EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk 42
                v+++G +  GKSt++n l+ +++  ++++ tT++   +   
  CCD24147.1 26 VLLLGETGIGKSTFLNNLCLQHVDLNETNNTTTTKYDASTY 66
                899******************99998888888776555443 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-05     0.011     102     125 ..      26      48 ..       5      71 .. 0.77
   2 ?   -1.6   0.0       2.3   2.2e+03      52      82 ..     130     161 ..     126     184 .. 0.61
   3 ?    0.4   0.3      0.56   5.3e+02      47      83 ..     187     226 ..     170     242 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
                  EEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelel 125
                  ++l+G++G+GKSt++n+l  + ++
   CCD24147.1  26 VLLLGETGIGKSTFLNNLCLQ-HV 48 
                  5789*************9876.33 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.3
                  EEE-GGG--HHH.HHHHHHHHHHHTTSEEEE- CS
  RsgA_GTPase  52 vlnKiDlleeee.eleelkeelealgyevllv 82 
                  +++K D + +ee ++++  ++le+++ +v ++
   CCD24147.1 130 LISKFDNYLKEEiQIKRNFNKLEKIDERVHVC 161
                  57788877777765555555555555444433 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.56
                  -EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEEEE-- CS
  RsgA_GTPase  47 iepvivlnKiDlleeee...eleelkeelealgyevllvs 83 
                  ++++ v+ K Dll+ +e   + + +++++++  +e++  +
   CCD24147.1 187 VNIIPVIAKSDLLTVKElelNKNLIMKDIQENHIEIFDFK 226
                  56677999****9999975555666667776666666553 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   1.4e-05     0.013       1      34 [.      26      59 ..      26     173 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-05
                EEEEEBTTTTHHHHHHHHHTS--S---SSS---S CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrr 34
                ++++G++  GKS++ln+L+ +++  +++n tT +
  CCD24147.1 26 VLLLGETGIGKSTFLNNLCLQHVDLNETNNTTTT 59
                6789******************988888877754 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-05     0.011      33      74 ..      23      66 ..       9      81 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-05
       AAA_7 33 kkpvllvGptGtGKtviikd.llkkld.kekylsltinfsaqts 74
                + +vll G+tG GK++ +++ +l+++d +e+ +++t +  a+t 
  CCD24147.1 23 HLNVLLLGETGIGKSTFLNNlCLQHVDlNETNNTTTTKYDASTY 66
                568*****************999999965666666666666665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.4e-05     0.032      14      41 ..      26      53 ..      23     175 .. 0.64
   2 ?   -0.1   0.2       1.3   1.3e+03      46     110 ..     338     401 ..     304     402 .. 0.50

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.4e-05
                EEEEESTTSSHHHHHHHHTTSS--SEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteGe 41
                v ++Ge+G GKSt+l+ l+ ++ + +++
  CCD24147.1 26 VLLLGETGIGKSTFLNNLCLQHVDLNET 53
                789**************99877663333 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.3
                 TCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHHHHHTC.HHHHHHHSTTGGTTCBGESTTSGGS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  46 gkdlkeqeleslrkeigvlpqepqlfpeltvrenesdee.iekalsklglkelkdtvvksspssLS 110
                 + +++++  +++r+++++   + +++++  + e e+++  ie++ +k+  ++l+++ v+s +s+LS
  CCD24147.1 338 KGKIQSDYSPRSRSRSQTTLFDGTIQNDELIFELEEKNIiIEAYQRKI--DKLQNKLVSSTKSTLS 401
                 333343333333333333333333333333444433333133333333..3445666666666666 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.8e-05     0.036       1      48 [.      26      75 ..      26     105 .. 0.63
   2 ?   -3.0   0.0        10   9.4e+03       2      22 ..     236     256 ..     235     265 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.8e-05
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkkdsvys..rnpeddfwdgYt 48
                  ++l G++g+GKSt+ ++L+ +  +  +++++ ++ +   + +ddf +  +
    CCD24147.1 26 VLLLGETGIGKSTFLNNLCLQHVDLNETNNTTTTKYdaSTYKDDFIYEID 75
                  5799*************997776433222222221112445555555555 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 10
  RNA_helicase   2 wlyGpsgeGKStlakeLakal 22 
                   +l+G+++  KS +a++ +k+l
    CCD24147.1 236 FLQGKENKKKSEYAEDKIKDL 256
                   678888888998888766665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.7e-05     0.035       8      44 ..      26      70 ..      23     111 .. 0.70
   2 ?   -2.3   0.0       5.1   4.8e+03      39      63 ..     157     182 ..     127     199 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.7e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee.....erpevv...f 44
                +++ Ge+G+GK+t l++l  q++  ++ ++      +++++   f
  CCD24147.1 26 VLLLGETGIGKSTFLNNLCLQHVDLNETNNttttkYDASTYkddF 70
                6799*****************976665555666663333333332 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.1
      AAA_22  39 rpevv..fvtlpsstsskdllrellra 63 
                 r++v   f++++s++ +k++  ++ ++
  CCD24147.1 157 RVHVCiyFIKPTSKG-LKEFDIKMMKN 182
                 333333233333333.55554444444 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.4e-05     0.032       2      39 ..      26      66 ..      25      87 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.4e-05
                EEEESSTTSSHHHHHHCHCT-CCC...-EEETTTTEEEEEE CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfs...ekekstigvdfltk 39
                v+l+G++g+GK+++l++++ ++++   +++++t+ +d +t 
  CCD24147.1 26 VLLLGETGIGKSTFLNNLCLQHVDlneTNNTTTTKYDASTY 66
                89******************999731122334444444443 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   3.7e-05     0.035      40      60 ..      24      44 ..       6      52 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.7e-05
                  .SEEEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE 40 shllvaGatgsGKStalntLi 60
                   ++l++G tg GKSt+ln+L 
    CCD24147.1 24 LNVLLLGETGIGKSTFLNNLC 44
                  59*****************96 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   9.6e-05      0.09      54      89 ..      20      55 ..       7      71 .. 0.71
   2 ?   -1.3   0.1      0.97   9.2e+02      39      78 ..     163     203 ..     150     216 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.6e-05
                BCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEES CS
         MCM 54 lrgdinvllvgdpgtaKsqlLkyveklapravytsg 89
                   + nvll+g+ g++Ks++L+ ++  +   + t+ 
  CCD24147.1 20 KAIHLNVLLLGETGIGKSTFLNNLCLQHVDLNETNN 55
                445689***************999854444444444 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.97
                 HHH---EBBBSS.SSBBCSS-EEEEEESSTSTHHHHHHHHH CS
         MCM  39 qlfggvkkkled.ktklrgdinvllvgdpgtaKsqlLkyve 78 
                   +++++k l++ ++k+  +i+ ++   p +aKs lL   e
  CCD24147.1 163 YFIKPTSKGLKEfDIKMMKNIHDIVNIIPVIAKSDLLTVKE 203
                 55666666555435677888888888889999999997654 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.1e-05     0.048       1      46 [.      25      75 ..      25      89 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.1e-05
                EEEEE--SSSSHHHHHHHGGGGB.....S--EEEEE--TT--HHHHH--B- CS
       AAA_5  1 dvlLvGppGtgKselaerlaaal.....nreveyvqltrdtteedlkgrre 46
                +vlL+G++G+gKs++   l+        ++++++    ++t ++d++++++
  CCD24147.1 25 NVLLLGETGIGKSTFLNNLCLQHvdlneTNNTTTTKYDASTYKDDFIYEID 75
                69************99999866558999999999999*********99998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.7e-05     0.063      25      47 ..      24      47 ..       9     100 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.7e-05
      AAA_16 25 elvllsGesGvGKsslv.rellra 47
                 +vll Ge G+GKs+ + + +l++
  CCD24147.1 24 LNVLLLGETGIGKSTFLnNLCLQH 47
                79***************4444444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.1e-05     0.076       3      40 ..      24      58 ..      22      97 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.1e-05
      AAA_24  3 lkiliyGpsgiGKTtlakel.gpkplfidtekGlkslda 40
                l++l+ G+ giGK+t++++l       +d+++ ++++  
  CCD24147.1 24 LNVLLLGETGIGKSTFLNNLcL---QHVDLNE-TNNTTT 58
                5899***************952...3334443.333333 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014      0.13      14      42 ..      15      43 ..       4      71 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
                     HHHHHCTSSS-EEEECSTTSSHHHHHHHH CS
  Sigma54_activat 14 qikkvaktdlsvlitGesGtGKellarai 42
                     + ++  + +l+vl++Ge+G GK+++ + +
       CCD24147.1 15 RRNAKKAIHLNVLLLGETGIGKSTFLNNL 43
                     4444456679*************987765 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00018      0.17      24      39 ..      25      40 ..       7      51 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
      AAA_29 24 atlltGpsGsGKSTll 39
                ++ll G++G GKST+l
  CCD24147.1 25 NVLLLGETGIGKSTFL 40
                69************98 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00015      0.14       3      22 ..      26      45 ..      24      54 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00015
                EEEEC-TTTCHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklal 22
                v+l Ge G+GK+t+l  l+l
  CCD24147.1 26 VLLLGETGIGKSTFLNNLCL 45
                799*************9986 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017      0.16     128     156 ..      22      51 ..       5      69 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00017
       T2SSE 128 erglilvsGgTgsGKttll.yallkeinks 156
                  + ++l+ G Tg GK+t+l + +l+ ++ +
  CCD24147.1  22 IHLNVLLLGETGIGKSTFLnNLCLQHVDLN 51 
                 5899***************55667776654 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00099      0.94       3      38 ..      23      60 ..      21     101 .. 0.75
   2 ?    2.0   0.7      0.14   1.3e+02     123     154 ..     187     232 ..     168     264 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00099
                EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH..H CS
    GTP_EFTU  3 irnigiighvDhGKtTLtdrLlyktgaiskkgeka..e 38
                ++n+ ++g +  GK+T++ +L  ++ + ++ ++++  +
  CCD24147.1 23 HLNVLLLGETGIGKSTFLNNLCLQHVDLNETNNTTttK 60
                89********************9998888855554331 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.14
                 TEEEEEEESCGST.HHHHHHHHHHHHHHHHHH.............H CS
    GTP_EFTU 123 vpiivfiNKmDrl.kaelkeiveevkqklsrk.............e 154
                 v+ii +i K D l  +el+  ++ + ++++++             +
  CCD24147.1 187 VNIIPVIAKSDLLtVKELELNKNLIMKDIQENhieifdfkddkldD 232
                 789**********977777777777777755534444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1134  (0.0632495); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2970.39
//
Query:       CCD24148.1  [L=537]
Description: hypothetical protein NDAI_0C04890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-05   25.0   0.0    2.2e-05   24.2   0.0    1.5  1  F-box       F-box domain
     0.0012   18.7   0.0     0.0026   17.6   0.0    1.6  1  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.013   15.4   0.9      0.021   14.7   0.1    1.8  2  F-box_4     F-box


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   3.7e-09   2.2e-05       2      45 ..      15      58 ..      14      61 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 3.7e-09
                HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH CS
       F-box  2 tlsrLPsevlrhILerLplsdllalrrVSkgwrilidsdrlwck 45
                +l +LP+ v+ +IL +L  sdl +l++++  +ril ++ + ++ 
  CCD24148.1 15 SLTELPLNVIFKILLQLQMSDLQNLAKTCNLLRILANESVVYKN 58
                6789*******************************999888765 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.4e-07    0.0026       3      46 ..      18      60 ..      16      62 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.4e-07
  F-box-like  3 rLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlv 46
                 LP  ++ +I+ +L  sdL +la +C   r +a+    ++++ +
  CCD24148.1 18 ELPLNVIFKILLQLQMSDLQNLAKTCNLLRILANES-VVYKNYY 60
                79*******************************877.9998876 PP

>> F-box_4  F-box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   3.6e-06     0.021       2      43 ..      13      54 ..      12      85 .. 0.85
   2 ?   -3.7   0.1       1.8   1.1e+04      74      88 ..     241     255 ..     231     264 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.6e-06
     F-box_4  2 edsLssLPlevlqhiaslLDsfsLsqLslvskllrevcssll 43
                ++sL++LPl+v+ +i+  L    L +L+++++llr ++++ +
  CCD24148.1 13 QRSLTELPLNVIFKILLQLQMSDLQNLAKTCNLLRILANESV 54
                5789*******************************8877654 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.8
     F-box_4  74 fstlfskvksWkfed 88 
                  stlfs  ++W++++
  CCD24148.1 241 TSTLFSDDEEWNITN 255
                 588888889998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2692  (0.150148); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 3977.92
//
Query:       CCD24149.1  [L=707]
Description: hypothetical protein NDAI_0C04900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-36  126.3   4.5    1.1e-36  126.3   4.5    2.4  2  PRKCSH-like   Glucosidase II beta subunit-like
    8.1e-16   58.1   1.4    8.1e-16   58.1   1.4    3.1  3  PRKCSH_1      Glucosidase II beta subunit-like protein
  ------ inclusion threshold ------
        3.5    7.9  15.1        9.9    6.5   3.5    2.7  2  Ldl_recept_a  Low-density lipoprotein receptor domain class A


Domain annotation for each model (and alignments):
>> PRKCSH-like  Glucosidase II beta subunit-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   4.5   1.8e-40   1.1e-36       6     113 ..      14     126 ..       8     202 .. 0.74
   2 ?   -2.1   3.0      0.47   2.8e+03     122     173 ..     481     532 ..     457     535 .. 0.72

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 1.8e-40
  PRKCSH-like   6 laisllvasavdelrGvapdklelykPd...engnwkclnsseiklsfdqvnddycdcPdGsdePGtsaceng......kfycaneGyisgyiesfkv 94 
                  l++s++++ + ++++G++p+ ++ly+ +     ++wkcln++ei +++dq+nd+ cdcPdGsdePGt ac+         fyc n+G+i+ +i + kv
   CCD24149.1  14 LILSVVIV-KGTKILGISPNLEKLYENNrviSTNKWKCLNNPEIEINWDQINDNICDCPDGSDEPGTFACNLEssssssLFYCENDGFIPRFISKSKV 110
                  33555444.3579*************996655677***********************************5332456668****************** PP

  PRKCSH-like  95 ddgvcdydiccdGsdeelg 113
                   dgvcd   ccd sde+l 
   CCD24149.1 111 MDGVCD---CCDCSDEALL 126
                  ******...*******653 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.47
  PRKCSH-like 122 iarkfeelleeankkvkkglkikeelllaakkkldelkkklkeledslkakk 173
                  +++++++ +++  k   ++lk ke l++  ++  +  +++ ke e++++a  
   CCD24149.1 481 LKKQIKSHEKKIMKLQANTLKKKELLAKLEQRLIRSTMHEEKEKEKEMNAMD 532
                  4555666666666666778888888888888888888888888888887765 PP

>> PRKCSH_1  Glucosidase II beta subunit-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.3   7.6e+03      74      92 ..      37      55 ..      33      56 .. 0.86
   2 ?   -3.1   0.3      0.96   5.7e+03       2      21 ..     482     501 ..     481     508 .. 0.74
   3 !   58.1   1.4   1.4e-19   8.1e-16      46     130 ..     554     701 ..     511     706 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.3
                EETTEEEEEE-SB-TTSSC CS
    PRKCSH_1 74 qegnklkyekGakCWnGPv 92
                +e+n+++  +  kC n P+
  CCD24149.1 37 YENNRVISTNKWKCLNNPE 55
                799999999999**99995 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.96
                 XXXXXXXXXXXXXXXXXXXX CS
    PRKCSH_1   2 ekeldeaeedikkieseltk 21 
                 +k++ ++e++i k++ ++ k
  CCD24149.1 482 KKQIKSHEKKIMKLQANTLK 501
                 68899999999999887644 PP

  == domain 3  score: 58.1 bits;  conditional E-value: 1.4e-19
                 EEETTEEEEEE....TTSEEEE.......TTEEEEEEEEEE....................................................TTEEEE CS
    PRKCSH_1  46 ekigdYeYkvv....llesvvq.......ddisiGefkkqe....................................................gnklky 81 
                   +++Y+Y+v+    l +s++q       + ++iGe +++                                                     g +l y
  CCD24149.1 554 TVLDNYKYEVTinpkLPGSIFQsemkndkNVVKIGELQSVKldkklnlqkyiehlkivypesslishlmnetttkkgdleidylfgnlpdinnGLVLEY 652
                 445566666641122446667666666655566777666666677777777777777777777777777777777777777777777777777899*** PP

                 EE-SB-TTSSC-EEEEEEEE-SS-EEEEEEEEETTEEEEEEEEGGG--X CS
    PRKCSH_1  82 ekGakCWnGPvRsaiveveCGdenelvsvseaekCeYllkvkspaaCsn 130
                  +G++CWnGP+Rsa   ++CG+e el  v ea kC Y +   +p++C +
  CCD24149.1 653 GNGQQCWNGPKRSASLFIKCGTEFELHNVYEATKCRYVFDASGPIGCYP 701
                 ***********************************************54 PP

>> Ldl_recept_a  Low-density lipoprotein receptor domain class A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.5    0.0017       9.9       7      35 ..      47      77 ..      44      82 .. 0.67
   2 ?    6.2   3.8     0.002        12      16      35 ..     105     124 ..      89     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0017
                  CEEETTSEEEEGGGT..TSSSTTSSSSGCCS CS
  Ldl_recept_a  7 efqCgsgeCIprswv..CdgeaDCeDgSDEe 35
                  + +C ++  I+ +w    d+  DC DgSDE 
    CCD24149.1 47 KWKCLNNPEIEINWDqiNDNICDCPDGSDEP 77
                  5666666655555542247788********4 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.002
                   EEGGGTTSSSTTSSSSGCCS CS
  Ldl_recept_a  16 IprswvCdgeaDCeDgSDEe 35 
                   I++s+v dg  DC D SDE+
    CCD24149.1 105 ISKSKVMDGVCDCCDCSDEA 124
                   8999***************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1631  (0.0909699); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.40
# Mc/sec: 5323.21
//
Query:       CCD24150.1  [L=441]
Description: hypothetical protein NDAI_0C04910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-42  144.2   1.3    5.5e-42  143.4   1.3    1.4  1  Svf1_C        Svf1-like C-terminal lipocalin-like domain
    9.5e-41  139.6   1.2      4e-40  137.5   1.2    2.0  1  Svf1          Svf1-like N-terminal lipocalin domain
  ------ inclusion threshold ------
        5.2    7.7  13.9        4.7    7.8   8.7    3.0  3  Secretin_N_2  Secretin N-terminal domain


Domain annotation for each model (and alignments):
>> Svf1_C  Svf1-like C-terminal lipocalin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   1.3   9.2e-46   5.5e-42       1     165 []     285     440 ..     285     440 .. 0.93

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 9.2e-46
      Svf1_C   1 mkpnhaAksWnflnFqsekvsavlmeFttpksygntkvsigiivkddkilavt....vdnkvehleaklDeetgwkvPksiklelkgkksevkdeevea 95 
                 m pn+aA++Wnf++Fqs ++s++l+e+tt+++++  +v+ ++i++d++i++++    ++n v+++++ lD+etgw++P++ik++l       +d +++ 
  CCD24150.1 285 MVPNKAASKWNFMTFQSLTYSILLLEYTTTRDFKYGTVTTWAISRDEEIISIGsqvnNTNIVKFKSTILDKETGWEYPSAIKFNLF--LH--DDADAND 379
                 78*************************************************99887778999**********************93..33..4456677 PP

      Svf1_C  96 kleadleelvervDvlaeiPqfvkkivsgvagtkPYiYqylnkkelklkvedeeevkekGllfaEatfis 165
                 k+e+d  +lv+r+D+++e+P++vk+i+s++++++PY+Yqy+++++++         +e+G++++E+tfis
  CCD24150.1 380 KFEEDNLNLVNRYDIFHELPSIVKNIASEFVHINPYLYQYCQRSKFR---------NEEGISIVESTFIS 440
                 7777666***************************************9.........689**********8 PP

>> Svf1  Svf1-like N-terminal lipocalin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   1.2   6.7e-44     4e-40       1     164 []      85     283 ..      85     283 .. 0.85

  Alignments for each domain:
  == domain 1  score: 137.5 bits;  conditional E-value: 6.7e-44
        Svf1   1 vEtqtfYftdldggivgfvQiiySnvi.Glyktaqftfkifdskekkek.nlWkstklenfe...........................idkasfyadn 70 
                 vEt+t+Yftdl+++ +gfvQi+ySnv+ G+yk++q++fk+f+++e++ k ++W+s+k+ n++                            +++ +  ++
  CCD24150.1  85 VETETLYFTDLNNNVCGFVQILYSNVMgGIYKGFQMNFKMFETNESQVKfSIWESIKIPNVVtfdkfsivsdiitfqiipngprseknnNKNKGCSLGK 183
                 8**************************77************888877778************9999999999999888777776544332455555566 PP

        Svf1  71 lsielkneegeqykikssvnkelkvdltvtrlapGfklgedgttyfg..........ddieepwgsmrHvfwPrnkveGtivlkkedkk....ieftge 155
                 l i + n    + +++s+++++lkvdl+     +Gfk+++dgt+yf+          +++ ++++++rHvf+Pr  +eGti++k + ++    ++f+++
  CCD24150.1 184 LLIIV-N--LPHGENTSDLQINLKVDLY-----QGFKMNPDGTSYFLdksihrndqsRENVKSSRYLRHVFVPRGICEGTISYKDKATNksfdFDFEKV 274
                 66766.3..5667889************.....********************99874555999*******************7533225666999999 PP

        Svf1 156 lglfvdAlq 164
                 +++++dA+q
  CCD24150.1 275 PVCYLDAVQ 283
                 ********9 PP

>> Secretin_N_2  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   8.7   0.00078       4.7      21      81 ..      23     103 ..      12     109 .. 0.77
   2 ?   -3.5   0.1       2.8   1.6e+04      62      74 ..     129     141 ..     127     142 .. 0.83
   3 ?    1.1   0.0       0.1   6.1e+02      49      73 ..     171     211 ..     161     214 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00078
  Secretin_N_2  21 vtsGsvsssgssssssssss...............sssgsssssssssnss.......sgtkietesesdfwgeLqkalesml 81 
                   v+  ++s+++++++++++ s               s  + s ss++++++s        +  +++e+e+ ++++L++++ + +
    CCD24150.1  23 VVNNEDSNNNNNNNNNNNRSytlindysaleifcaS--KRSHSSGKNKTTSllkslkpPSIDTRVETETLYFTDLNNNVCGFV 103
                   666677777777777777779*********998542..4444444444445677899999*****************997665 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.8
  Secretin_N_2  62 etesesdfwgeLq 74 
                   e++ ++++w+ ++
    CCD24150.1 129 ESQVKFSIWESIK 141
                   57889999*9986 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.1
  Secretin_N_2  49 sssssnss................sgtkietesesdfwgeL 73 
                   +++++n++                +++ ++ + ++d+++  
    CCD24150.1 171 KNNNKNKGcslgklliivnlphgeNTSDLQINLKVDLYQGF 211
                   22222222344557888889999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3265.35
//
Query:       CCD24151.1  [L=318]
Description: hypothetical protein NDAI_0C04920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-62  209.8   0.2    6.1e-62  209.3   0.2    1.2  1  VIT1      VIT family
  ------ inclusion threshold ------
        3.9    7.3   7.3        1.8    8.4   1.7    2.2  2  KdpC      K+-transporting ATPase, c chain


Domain annotation for each model (and alignments):
>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.3   0.2   6.8e-66   6.1e-62       2     214 ..      98     314 ..      97     315 .. 0.94

  Alignments for each domain:
  == domain 1  score: 209.3 bits;  conditional E-value: 6.8e-66
        VIT1   2 rdavlGanDGLvspfalvaGlsaaslgssktvllaGlaellAGaiSMgiGeYlsvkserdlekaerkreeeeleedpeegeaeelaeilearg..lsee 98 
                 +d+++G++DGL++pfal+aGls  slg+sk+v+++G+ael++GaiSMg+G+Yl +kse+d+++ae+k+e++++ e+++    +e+++il + +  +see
  CCD24151.1  98 SDLIIGLSDGLTVPFALTAGLS--SLGDSKLVITGGFAELISGAISMGLGGYLGAKSESDYYHAEVKQERRKIFENQN-LIYHEVEDILIQINpdFSEE 193
                 89********************..***************************************************996.4459******9996559*** PP

        VIT1  99 laqevaaellknpdallelmlreelgpsaseelasplkaAlssalsfliGgliPllpylfvesvglalvvsiavtllalllfGavkallt.....gssk 192
                 +  +++++l++npd +l++++r ++g+++  ++++ + +A++++ ++liGg++Pl+py+fv+sv+++l++si+v++++l+lfG++ka+++       ++
  CCD24151.1 194 TILSFIKDLQSNPDLMLDFVVRYGKGLEE-PAENRQFISAMTIGGGYLIGGFVPLFPYFFVTSVHQGLIYSIIVMAVTLFLFGYFKAQISmgdvsTFPR 291
                 **************************886.34456788********************************************************98888 PP

        VIT1 193 .lvsalrmlliGalAaaaaylig 214
                  + ++++m+ +G++Aaaaa++++
  CCD24151.1 292 kIGEGVEMMTVGGVAAAAAWFFV 314
                 8*******************998 PP

>> KdpC  K+-transporting ATPase, c chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.7    0.0002       1.8      31      87 ..      30      87 ..      22      98 .. 0.86
   2 ?    1.7   0.3     0.022   1.9e+02       8      32 ..     251     275 ..     245     312 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0002
                -HHHHTT-EEE.E.TEEEEETTT------SSS--------ST-TTT-------SS-HH CS
        KdpC 31 fpeqAnGsliead.gkvvGseligqeftsdkYfhgRpsavnynaaasggsnlgpsnpe 87
                 + ++ Gs+ +++ ++   s+ +gq+ + ++ + +   + ny++ +s +sn   sn  
  CCD24151.1 30 QNTSSYGSITTNNdNNNNNSNNLGQQPDLEQGLSPSTKSLNYDVDSSRSSNNNDSNVG 87
                5677889*988554999**********************************9999865 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.022
                 HHHHHHHHHTHHHHHHHHHHHHH-H CS
        KdpC   8 llvltvllgliYplavtgiaqllfp 32 
                 ++v+ v  gliY ++v++++ +lf 
  CCD24151.1 251 FFVTSVHQGLIYSIIVMAVTLFLFG 275
                 67889999**********9998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1749  (0.0975515); expected 358.6 (0.02)
Passed bias filter:                      844  (0.0470746); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 2450.51
//
Query:       CCD24152.1  [L=133]
Description: hypothetical protein NDAI_0C04930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-21   76.0   4.5      4e-21   75.7   4.5    1.1  1  Histone        Core histone H2A/H2B/H3/H4
    7.8e-06   26.1   0.1    1.6e-05   25.0   0.1    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
     0.0016   18.9   0.0     0.0028   18.1   0.0    1.3  1  TFIID_20kDa    Transcription initiation factor TFIID subunit 
     0.0019   18.4   0.0     0.0029   17.8   0.0    1.2  1  CENP-W         CENP-W protein
  ------ inclusion threshold ------
      0.013   15.6   0.7      0.014   15.4   0.7    1.1  1  YscO-like      YscO-like protein


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   4.5   1.1e-24     4e-21      25     130 ..       4     106 ..       1     107 [. 0.95

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 1.1e-24
                 XHT.TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHH CS
     Histone  25 ker.kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpk 122
                 k++ k ++++++++k+ ++++t++ +e  k++ + ++++++ ++++v+++ ++    d +is++++ +l+++++++++++++eA++la ++K++Ti ++
  CCD24152.1   4 KAEkKPAASKAPAEKKPAAKKTSTATEGIKKRTKVRKETYSSYIYKVLKQTHP----DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAR 98 
                 333488899999*****************************************....****************************************** PP

                 HHHHHHHH CS
     Histone 123 DiqlArrl 130
                 +iq+A+rl
  CCD24152.1  99 EIQTAVRL 106
                 *******7 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   4.6e-09   1.6e-05       8      65 .]      47     104 ..      45     104 .. 0.96

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.6e-09
                    HHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF   8 vkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65 
                    + k++k++ pd++ i++ +  +++ +v    e++a+eA++++  +k+ ti+a  i+ Av
     CCD24152.1  47 IYKVLKQThPDTG-ISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAV 104
                    779*****88888.******************************************998 PP

>> TFIID_20kDa  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   7.8e-07    0.0028       7      60 ..      49     102 ..      45     107 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.8e-07
                  HHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHH CS
  TFIID_20kDa   7 dLvqqvdsetkldedvedlLleiaddFvesvtkfacklakhRksdklevrDiql 60 
                    ++q  ++t + ++   +L   ++d  e + + a+kla + k +++++r iq 
   CCD24152.1  49 KVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQT 102
                  56888899999999999***********************************95 PP

>> CENP-W  CENP-W protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.2e-07    0.0029       4      83 ..      29     108 ..      25     111 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 8.2e-07
      CENP-W   4 attvsqrklikrkaprgflkrvlkrrkphlrleascdllvhlncllfirrlaeesrtnacenksgvikkdhvlaaakvil 83 
                 +  + +r ++++ +  +++ +vlk+ +p  ++++++  ++      + +r+a e+   a  nk   i    + +a ++il
  CCD24152.1  29 TEGIKKRTKVRKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLIL 108
                 456899**************************999877766666667899999999999999999999999999988887 PP

>> YscO-like  YscO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.7     4e-06     0.014      13     111 ..       4     104 ..       1     119 [. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHH.HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   YscO-like  13 kkrrveeAEkvvkdkkkaLekEkeklrkleeerdkvkkhkkaKvaq.lre.eldkGttsdkikkmkryikvvkeelkqeekkvekQkekVkvAerkvEq 109
                 k++++  A k+ ++kk a +k     + +++    +k+ +   + + l++ + d G + + + +++++++ + e+++ e+ k++  ++k ++ +r++  
  CCD24152.1   4 KAEKKPAASKAPAEKKPAAKKTSTATEGIKKRTKVRKETYSSYIYKvLKQtHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQT 102
                 66777778888888877766555444433333333334445556665665156999***************************************9988 PP

                 HH CS
   YscO-like 110 ar 111
                 a 
  CCD24152.1 103 AV 104
                 75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1064  (0.0593452); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 985.76
//
Query:       CCD24153.1  [L=132]
Description: hypothetical protein NDAI_0C04940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-21   74.6   1.1    6.1e-21   73.9   1.1    1.4  1  Histone_H2A_C  C-terminus of histone H2A
    1.7e-17   64.0   0.0    2.3e-17   63.6   0.0    1.2  1  Histone        Core histone H2A/H2B/H3/H4
    7.7e-06   26.1   0.0    1.2e-05   25.5   0.0    1.3  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
  ------ inclusion threshold ------
      0.043   13.7   0.0      0.065   13.2   0.0    1.3  1  LcrG           LcrG protein


Domain annotation for each model (and alignments):
>> Histone_H2A_C  C-terminus of histone H2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   1.1   1.4e-24   6.1e-21       1      35 []      93     127 ..      93     127 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 1.4e-24
  Histone_H2A_C   1 EELnkLLggVTIAqGGVLPnIhkvLLpkktkkkkk 35 
                    +ELnkLLg+VTIAqGGVLPnIh++LLpkk++k++k
     CCD24153.1  93 DELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKAAK 127
                    7*******************************986 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   5.2e-21   2.3e-17      45     129 ..       7      90 ..       4      92 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 5.2e-21
                 HHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  45 tvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                  +a+   +++q+++++ +  +p+ Rv+r ++      +ri + a+++l+++lE+l +e++e+A+++a+++K+ +i p+++qlA+r
  CCD24153.1   7 GKAGSTAKASQSRSAKAGLTFPVGRVHRLLRR-GNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 90 
                 56778899***********************8.9999***********************************************9 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.6e-09   1.2e-05       2      65 .]      26      89 ..      25      89 .. 0.97

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 2.6e-09
                   XXXHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  2 eLPiarvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                    +P+ rv ++++  + a++i + A+++++ ++e  + e+++ A   + ++k+  i + h++lA+
     CCD24153.1 26 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAI 89
                   69***********************************************************997 PP

>> LcrG  LcrG protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.5e-05     0.065      13      58 ..      86     131 ..      73     132 .] 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.5e-05
        LcrG  13 elairdsdeRakllqel.leglGlapeageklfggleaelvkaaeqe 58 
                  lair+ de +kll ++ +++ G+ p++ ++l+ +++a+ +k a qe
  CCD24153.1  86 QLAIRNDDELNKLLGNVtIAQGGVLPNIHQNLLPKKSAKAAK-ASQE 131
                 79************997357789***********99998776.4555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1064.48
//
Query:       CCD24154.1  [L=219]
Description: hypothetical protein NDAI_0C04950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-61  206.5   0.0    2.3e-61  206.3   0.0    1.0  1  ADK              Adenylate kinase
    1.4e-25   90.3   0.1      3e-25   89.2   0.0    1.5  2  AAA_17           AAA domain
    1.5e-17   63.3   0.0    3.6e-17   62.0   0.0    1.7  1  ADK_lid          Adenylate kinase, active site lid
    1.5e-07   31.6   0.0    3.5e-07   30.5   0.0    1.5  2  AAA_33           AAA domain
    1.8e-05   25.3   0.0    4.4e-05   24.0   0.0    1.6  2  AAA_18           AAA domain
    0.00036   20.9   0.1     0.0011   19.3   0.0    1.7  2  Hydin_ADK        Hydin Adenylate kinase-like domain
  ------ inclusion threshold ------
       0.01   15.6   0.0      0.013   15.2   0.0    1.3  1  Cytidylate_kin   Cytidylate kinase
      0.034   13.9   0.0      0.056   13.2   0.0    1.4  1  AAA_24           AAA domain
       0.14   11.8   0.0       0.33   10.6   0.0    1.5  1  Thymidylate_kin  Thymidylate kinase
       0.16   11.2   0.0       0.25   10.6   0.0    1.3  1  Zeta_toxin       Zeta toxin
       0.16   12.2   0.0       0.29   11.4   0.0    1.5  1  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> ADK  Adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.3   0.0   1.4e-64   2.3e-61       1     150 [.      10     196 ..      10     197 .. 0.99

  Alignments for each domain:
  == domain 1  score: 206.3 bits;  conditional E-value: 1.4e-64
                 EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHCT-HHHHHHHHHHHTTSS--HHHHHHHHHHHHHCH.GTTTEEEEESB-SSHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK   1 llGaPgaGKGtqaeklvkkyglahlstGdllRaevksgtelGkeakevmdkgelvpdevvvklvkeeleke.dkkkgfllDGfPRtveqaealeellee 98 
                 l+G+PgaGKGtqa+klv+ky++ahlstGd+lR+++++g+elG eak++mdkg lv+de++v+++k+el+++ ++k+gf+lDGfPRt++qae+l+++l+e
  CCD24154.1  10 LIGPPGAGKGTQAPKLVEKYNAAHLSTGDMLRSQIAKGSELGLEAKKIMDKGGLVSDEIMVNMIKDELTNNpACKNGFILDGFPRTIPQAEKLDQMLAE 108
                 79********************************************************************99*************************** PP

                 HTSEESEEEEEE--HHHHHHHHHT....................................GSHHHHHHHHHHHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         ADK  99 ekvkldlvleldvpeevlveRltg....................................DneetvkkRletykkqtkplidyykkkg 150
                 +++ l+  +el+v++++lv+R+tg                                    Dne+++kkRl+ y++qt+p++d+ykk+g
  CCD24154.1 109 QGTPLQRAVELKVDDDLLVSRITGrlihpasgrsyhklfnppkvdmidditgepliqrsdDNEDALKKRLAGYHAQTEPIVDFYKKSG 196
                 *************************************************************************************986 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   1.8e-28     3e-25       1     128 [.      11     142 ..      11     147 .. 0.87
   2 ?   -2.3   0.0       3.4   5.5e+03     126     136 .]     165     175 ..     150     180 .. 0.70

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 1.8e-28
                 EE-TTSSHHHHHHHHHHHHTEEEEEHHHHHHHHHHTT.TS.HSSHHHHCTSHHHHHHHHHHHHHHHHHHHH.HSSEEEEEE-SEEEETTEEEESSHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsaGdllreeakrg.gl.akardemrklpleekkelqkeaaekiaeea.kkkgvlvdghprikeqagfldglpkev 96 
                 +G+PG+GKgtq+ klveky+  hls+Gd+lr+ +++g +l  +a++ m+k+ l+ ++ +  ++++++ ++  +k+g+++dg+pr+  qa+ ld++ +e 
  CCD24154.1  11 IGPPGAGKGTQAPKLVEKYNAAHLSTGDMLRSQIAKGsELgLEAKKIMDKGGLVSDEIMVNMIKDELTNNPaCKNGFILDGFPRTIPQAEKLDQMLAEQ 109
                 69*****************************888777556557888899******************8884499**********************997 PP

                 HHHH..SEEEEEE--HHHHHHHHHHH...TTST-T CS
      AAA_17  97 leelkpdaiilleadpeeilerrlkd...rtrgrd 128
                  + l  +  + l++d++ +++r   +     +gr+
  CCD24154.1 110 GTPL--QRAVELKVDDDLLVSRITGRlihPASGRS 142
                 7777..89999999999999998776542357766 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.4
                 T-TS-SHHHHH CS
      AAA_17 126 grdddneesik 136
                 +r+ddne+ +k
  CCD24154.1 165 QRSDDNEDALK 175
                 46777776654 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   2.2e-20   3.6e-17       1      36 []     133     168 ..     133     168 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 2.2e-20
                 EEE-TTT--EEETTTB--SSTTB-TTT--.-B--GG CS
     ADK_lid   1 RrvCpkCGrsYhvvfnpPkveglCDkCGepLvqRsD 36 
                 R+++p++GrsYh  fnpPkv++++D +GepL+qRsD
  CCD24154.1 133 RLIHPASGRSYHKLFNPPKVDMIDDITGEPLIQRSD 168
                 99**********778********************9 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   2.1e-10   3.5e-07       2     118 ..       8     133 ..       8     142 .. 0.81
   2 ?   -3.4   0.0       6.1     1e+04      30      43 ..     171     184 ..     165     188 .. 0.58

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 2.1e-10
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrr.rlfg.....tdqqsktdytr.vldr.lyqilnelarkalsagrnvildatnlsrrerarflkla 92 
                 ++l+G+pG+GK t a +l++k  a +ls+ +++r ++++      + +++ d    v+d+ + +++++ ++ + + ++++ild   ++  + +++++++
  CCD24154.1   8 IVLIGPPGAGKGTQAPKLVEKYNAAHLSTGDMLRsQIAKgselgLEAKKIMDKGGlVSDEiMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQML 106
                 689************************99877774777666544222222222222444467788999999999999******999999********** PP

      AAA_33  93 rrlgvpv.rivvvetdeetlkeRlakR 118
                  ++g p  r+v +++d+++l +R+  R
  CCD24154.1 107 AEQGTPLqRAVELKVDDDLLVSRITGR 133
                 *****9659***************999 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 6.1
      AAA_33  30 sdtlrrrlfgtdqq 43 
                 +d+l++rl+g + q
  CCD24154.1 171 EDALKKRLAGYHAQ 184
                 55566666654444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.7e-08   4.4e-05       1     116 [.       8     136 ..       8     146 .. 0.72
   2 ?   -3.2   0.0       7.3   1.2e+04      17      42 ..     173     202 ..     171     211 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 2.7e-08
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....gvnlrd.vakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakd 93 
                 I+l G+pG+GK t a  L ++ +      g+ lr+ +ak ++l le  + + +  ++ de +++ + d+l +n++     +  ++dg++    +++  d
  CCD24154.1   8 IVLIGPPGAGKGTQAPKLVEKYNAahlstGDMLRSqIAKGSELGLEAKKIMDKGGLVSDEIMVNMIKDELTNNPA---CKNGFILDGFPRTIPQAEKLD 103
                 89****************999644778886665541555555555555557777788888888888888888877...234447777776666555555 PP

      AAA_18  94 ikk..........vvLtaspeelleRlekRgye 116
                              v L+++++ l  R+  R  +
  CCD24154.1 104 QMLaeqgtplqraVELKVDDDLLVSRITGRLIH 136
                 4446777777777**************999755 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.3
      AAA_18  17 eLskrl.gf...gvnlrdvakenglllevd 42 
                 +L+krl g+    + + d  k++g+  +vd
  CCD24154.1 173 ALKKRLaGYhaqTEPIVDFYKKSGIWSGVD 202
                 577777677776666677777776666665 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   6.5e-07    0.0011       2      52 ..       8      57 ..       7      82 .. 0.89
   2 ?   -1.0   0.0       1.2   1.9e+03     173     197 ..      66      91 ..      60      92 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6.5e-07
   Hydin_ADK  2 iivhGaPlsGKtatavtLakkYeaAlltiDsvvleAisdgnssaGlrArel 52
                i++ G+P +GK + a +L  kY+aA l+  +++   i++g s+ Gl A+++
  CCD24154.1  8 IVLIGPPGAGKGTQAPKLVEKYNAAHLSTGDMLRSQIAKG-SELGLEAKKI 57
                7889*********************************986.5789999876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
   Hydin_ADK 173 edllveIlsERlqln.dCyrGvvfDg 197
                 ++++v+++ + l  n  C  G ++Dg
  CCD24154.1  66 DEIMVNMIKDELTNNpACKNGFILDG 91 
                 8899999998888774699******9 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.0   8.2e-06     0.013       2      35 ..       9      42 ..       8      78 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 8.2e-06
                    EEE-STTSSHHHHHHHHHHHHT-EEEEHHHHHHH CS
  Cytidylate_kin  2 aiDGPagsGKssvaralaeklglkyldtgalYRa 35
                     + GP g+GK++ a +l ek +++ l+tg + R 
      CCD24154.1  9 VLIGPPGAGKGTQAPKLVEKYNAAHLSTGDMLRS 42
                    566****************************995 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.4e-05     0.056       2      31 ..       5      36 ..       4      87 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.4e-05
      AAA_24  2 klkiliyGpsgiGKTtlakel..gpkplfidt 31
                +l+i+++Gp+g+GK t+a +l  +++++ + t
  CCD24154.1  5 SLRIVLIGPPGAGKGTQAPKLveKYNAAHLST 36
                689****************9988888888876 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0002      0.33       3      60 ..      12      72 ..      12      77 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
                     ESTTSSHHHHHHHHHHHHHHTTE....EEEESSSTTSHHHHHHHHHHHTCS---HHHHHHH CS
  Thymidylate_kin  3 GlDGaGKttqaellkerlkeegik...vvltrepggteiGekirelllkeeeleeqteall 60
                     G  GaGK tqa +l+e++++++++   +++++  +g+e+G  +++++ k   ++++ ++++
       CCD24154.1 12 GPPGAGKGTQAPKLVEKYNAAHLStgdMLRSQIAKGSELGLEAKKIMDKGGLVSDEIMVNM 72
                     5669*****************9987788888889999999999999888888888877766 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00015      0.25      19     121 ..       8     110 ..       4     121 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00015
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrld.pDdlRelhPeyeeilk..adpkkaseltqkdaselvekllqeaien...gyniivegtlrspdvvk 111
                 i+l G pGAGK++ a +l ++     n+ +l+ +D lR+++ + +e+    ++ ++   l+++++  +v+++ +e+++n   +  +i++g  r++ +++
  CCD24154.1   8 IVLIGPPGAGKGTQAPKLVEKY----NAAHLStGDMLRSQIAKGSELGLeaKKIMDKGGLVSDEI--MVNMIKDELTNNpacKNGFILDGFPRTIPQAE 100
                 78889***************98....899997358889999887775331145555555665553..45555555555544466777777777777777 PP

  Zeta_toxin 112 klaealkkaG 121
                 kl + l+++G
  CCD24154.1 101 KLDQMLAEQG 110
                 7777777766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018      0.29       8      33 ..       8      33 ..       3      90 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeea 33
                +v++G++G+GK t + +l+e+++++ 
  CCD24154.1  8 IVLIGPPGAGKGTQAPKLVEKYNAAH 33
                79******************996554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1733.05
//
Query:       CCD24155.1  [L=1633]
Description: hypothetical protein NDAI_0C04960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-58  195.9   1.2    4.5e-58  195.9   1.2    7.7 11  SIR4_SID  Sir4 SID domain


Domain annotation for each model (and alignments):
>> SIR4_SID  Sir4 SID domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.2      0.22   3.9e+03       8      47 ..       5      47 ..       1      96 [. 0.52
   2 ?   -3.1   0.8       0.4   7.2e+03      18      38 ..     181     201 ..     170     243 .. 0.48
   3 ?   -3.9   4.5      0.68   1.2e+04      11      60 ..     312     359 ..     299     377 .. 0.47
   4 ?   -4.4   2.5      0.97   1.7e+04       7      46 ..     398     434 ..     392     461 .. 0.42
   5 !    3.1   2.7    0.0048        87       2      66 ..     472     539 ..     471     599 .. 0.75
   6 ?   -3.9   3.2      0.68   1.2e+04      23      88 ..     811     876 ..     793     899 .. 0.54
   7 ?   -6.2   4.3         1   1.8e+04      36      36 ..     879     879 ..     830     944 .. 0.49
   8 !  195.9   1.2   2.5e-62   4.5e-58       1     162 []     990    1152 ..     990    1152 .. 0.96
   9 ?   -2.8   0.2      0.32   5.7e+03       3      32 ..    1326    1356 ..    1324    1380 .. 0.64
  10 ?   -7.8   9.2         1   1.8e+04      28      83 ..    1439    1499 ..    1402    1556 .. 0.57
  11 ?   -2.3   0.8      0.23   4.1e+03      48      60 ..    1542    1554 ..    1508    1595 .. 0.47

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.22
    SIR4_SID  8 sdsdeesendeeslt..deeessseevddieisekqkt.iknv 47
                s s +es  +++     ++e+ +s ++  ++ ++k+++  k +
  CCD24155.1  5 SKSSNESTPSKDRPDkgNHEQLNSPNIPLMKYTNKKNSkAKKS 47
                4444444432222223455566666666666666633322221 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.4
    SIR4_SID  18 eesltdeeessseevddieis 38 
                 +e  + +++++s +++ +e  
  CCD24155.1 181 NETTEKNNNTKSPTSKGDENE 201
                 222222222222222222222 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 0.68
    SIR4_SID  11 deesendeesltdeeessseevddieisekqktiknvsta..leaelvdses 60 
                 + e+   ++s+ de  ss+e ++d+  s++  +  n+st+  +   + ++e 
  CCD24155.1 312 ELETVLPKHSNVDEVDSSNERAKDDVTSSD--MPTNISTPskI--TSEQEEG 359
                 334443333444555555544444444444..25577777332..2211111 PP

  == domain 4  score: -4.4 bits;  conditional E-value: 0.97
    SIR4_SID   7 isdsdeesendeesltdeeessseevddieisekqktikn 46 
                 is  d++++  +e  ++e++ s+e++      +     +n
  CCD24155.1 398 ISAPDKKTATIQEDIEHEDKVSKESIITQSAKNI---SEN 434
                 5555555554333333333333333222222222...111 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.0048
    SIR4_SID   2 meiiyisdsdeesendeesltdeeessseevddieisekqkt.iknvsta...leaelvdsesssegse 66 
                 +ei +is + +++++  e++td  +s ++e +  e+s++ k+  +n++t+   +ea+++++e++ + + 
  CCD24155.1 472 LEIPIISSKLDDTDHVVEGKTDALSSGKDEGNTLESSSN-KFlSQNITTKqnnVEALTPSNEANIDKQV 539
                 688889998888888888999999999999999999999.77799998888886667766666655443 PP

  == domain 6  score: -3.9 bits;  conditional E-value: 0.68
    SIR4_SID  23 deeessseevddieisekqktiknvsta..leaelvdsessse.gseiedpeterkkldrelakevnek 88 
                 d  +  +++++    +++     n+++    +  ++++es++e gs+++   +erk+ + ++ ++ ++k
  CCD24155.1 811 DTRSRVKTQTNMPLFVQN---KTNSTKLgtTNSSMKTVESKEEvGSKSKLNAMERKRNNDDILESTKSK 876
                 444444444444333333...334333344233333334433314444444566666666665555554 PP

  == domain 7  score: -6.2 bits;  conditional E-value: 1
    SIR4_SID  36 e 36 
                 +
  CCD24155.1 879 K 879
                 1 PP

  == domain 8  score: 195.9 bits;  conditional E-value: 2.5e-62
    SIR4_SID    1 kmeiiyisdsdeesen...deesltdeeessseevddieisekqktiknvsta....leaelvdsesssegseiedpeterkkldrelakevnekla 90  
                  kmeiiyi+d +ee+++   +++++td +++ss+++ddiei ++   ikn+s++    +eael   ++s+e++++ dp+terk++dr la+ v+ekla
  CCD24155.1  990 KMEIIYIPDGAEEEAMkhgSNKGSTDVSSDSSDDFDDIEILDY---IKNSSPVkgktFEAEL---AASQEAPAAIDPYTERKMHDRILAIGVMEKLA 1080
                  8**************9999999999******************...9999999875555555...9******************************* PP

    SIR4_SID   91 kkkayskstisdLiesgiaehsplesdpkvSvTNnICsvqNYesSeaffyQqlhkkdrLeYlpldsalskey 162 
                  +k++y+k++isdLie+g+++h p+ +dpk+SvTNnICs++NYe+S+affyQqlhk+d+LeY+p+d ++s+ey
  CCD24155.1 1081 AKTVYDKNSISDLIECGVVKHVPFVDDPKSSVTNNICSYNNYETSHAFFYQQLHKRDKLEYIPIDIPISEEY 1152
                  *******************************************************************99986 PP

  == domain 9  score: -2.8 bits;  conditional E-value: 0.32
    SIR4_SID    3 eiiyisdsdeesen.deesltdeeessseev 32  
                  ++ ++s+s ee en  +e++ d  ++ s+++
  CCD24155.1 1326 DVTNVSESSEEAENeIDEGSPDFRNYPSSSI 1356
                  5677888888888764555556666655554 PP

  == domain 10  score: -7.8 bits;  conditional E-value: 1
    SIR4_SID   28 sseevddieisekqktiknvsta.......leaelvdsesssegseiedpeterkkldrelak 83  
                  ++ e+ + ei + q++ik+ s         l   +++ e++   + +e+ e+e +++   l+k
  CCD24155.1 1439 KNMESRNQEILKSQEIIKSLSGLvmdnevkL--ISQTAEVKRVEKIAEENEKELRRYKHLLKK 1499
                  4445556666666666666666555554332..222222222223333333333333333332 PP

  == domain 11  score: -2.3 bits;  conditional E-value: 0.23
    SIR4_SID   48 staleaelvdses 60  
                  +++le + ++se+
  CCD24155.1 1542 IKQLEKKCSNSEV 1554
                  1122222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2457  (0.137041); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.19u 0.28s 00:00:01.47 Elapsed: 00:00:00.47
# Mc/sec: 10538.71
//
Query:       CCD24156.1  [L=1202]
Description: hypothetical protein NDAI_0C04970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2538  (0.141558); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.26s 00:00:01.21 Elapsed: 00:00:00.46
# Mc/sec: 7878.11
//
Query:       CCD24157.1  [L=647]
Description: hypothetical protein NDAI_0C04980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-35  121.1   5.5      2e-35  121.1   5.5    3.1  4  CFIA_Pcf11    Subunit of cleavage factor IA Pcf11
    0.00098   19.0   0.2     0.0043   16.9   0.0    2.2  2  VHS           VHS domain
      0.001   19.9   0.7     0.0034   18.2   0.1    2.4  2  CTD_bind      RNA polymerase II-binding domain.
  ------ inclusion threshold ------
       0.13   11.7   4.9       0.24   10.7   4.9    1.4  1  TMEM43        Transmembrane protein 43
       0.28   11.1   3.6       0.94    9.4   3.6    1.9  1  Borrelia_REV  Borrelia burgdorferi REV protein
          2    8.4   4.0         14    5.7   0.1    2.5  2  zf-C2HC_2     zinc-finger of a C2HC-type
        2.3    8.3   5.7        6.2    6.9   0.6    2.5  2  zf-C2H2_6     C2H2-type zinc finger
        5.1    6.8   6.6        1.2    8.9   0.4    2.2  2  ASFV_J13L     African swine fever virus J13L protein
        7.7    6.2   9.4         43    3.8   4.7    3.0  2  zf_UBZ        Ubiquitin-Binding Zinc Finger


Domain annotation for each model (and alignments):
>> CFIA_Pcf11  Subunit of cleavage factor IA Pcf11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.3      0.61   1.2e+03      42      68 ..     255     281 ..     219     315 .. 0.64
   2 ?   -3.2   0.2       6.3   1.3e+04      36      52 ..     349     365 ..     342     375 .. 0.47
   3 ?   -3.1   0.1       5.8   1.1e+04      56      66 ..     406     416 ..     392     433 .. 0.60
   4 !  121.1   5.5   9.9e-39     2e-35       2      90 .]     478     598 ..     477     598 .. 0.99

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.61
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  CFIA_Pcf11  42 skkasknaatqassssanesseksent 68 
                 ++++++ + +  s++ +n+++++++++
  CCD24157.1 255 TNTTNSPTPNLLSMTGSNDPNNNNADS 281
                 222223333333334444444444432 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.3
                 XXXXXXXXXXXXXXXXX CS
  CFIA_Pcf11  36 sssnktskkasknaatq 52 
                 ++  ++++k+  n++ +
  CCD24157.1 349 DKLSEQNNKNGLNNELD 365
                 44445555554444333 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.8
                 XXXXXXXXXXX CS
  CFIA_Pcf11  56 ssanessekse 66 
                 +++n+++e+++
  CCD24157.1 406 NQSNITNENNQ 416
                 33444444433 PP

  == domain 4  score: 121.1 bits;  conditional E-value: 9.9e-39
                 XXXXXXXXXXBXBXXXXXHHHHHTXXTHHCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............................. CS
  CFIA_Pcf11   2 kkttttakniQsRnWYLddsqWvkfkddeivstksssnktskkasknaatqassssanesseksentsls............................. 71 
                 ++tt+takniQsRnWYL+d+qWvkf+ddeivs+ksssnk+++k++k++a+++++s+an+++e+++nt+ls                             
  CCD24157.1 478 ATTTSTAKNIQSRNWYLHDTQWVKFNDDEIVSLKSSSNKQQDKFQKTTANIDIHSQANIPGENNGNTQLSnmvnllnsnstnnngssnapyafssmgvs 576
                 689************************************************************************************************ PP

                 ...HHHHT-EEEE-TTTSTTEE CS
  CFIA_Pcf11  72 ...adlekkyVvVPesstdmnf 90 
                    +dlekk+V+VPes++dm+f
  CCD24157.1 577 lgeTDLEKKFVIVPESTQDMTF 598
                 ********************98 PP

>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.2e-06    0.0043      38     117 ..      38     112 ..      18     117 .. 0.77
   2 ?   -3.0   0.1         3   6.1e+03      22      49 ..     179     210 ..     163     216 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.2e-06
                 TCHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTTTCHCS.HHHHHHHHHHHH CS
         VHS  38 eagpkeavrlikkkinsknphvallaLklldalvkNcGskfhleiaskeflnelvklilekknsklakvkkkvlelleeW 117
                    +++ v++i+ +i++  p+  l+a  +ld++ kN Gs+    ++++ f     +l ++ +   ++  ++k+++l + W
  CCD24157.1  38 ISCAQYFVDAIESRIEKCIPKQKLYAFYVLDSVCKNTGSPYTIYFSRNLF-----SLYKKTYLLVDNVTRTKMITLFKLW 112
                 56688999********************************9998887655.....3444555555444566666666666 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3
                 -....-HHHHHHHHHHHHCSTCHHHHHHHHHH CS
         VHS  22 e....dlslileicDlinekeagpkeavrlik 49 
                 +     l+  l ++ +++++ +++k  v+++k
  CCD24157.1 179 QpddqKLQTKLLVLAQLKQELQKGKLTVEALK 210
                 33323577777777777777777777777765 PP

>> CTD_bind  RNA polymerase II-binding domain.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.7e-06    0.0034       1      58 [.      60     113 ..      60     116 .. 0.95
   2 ?   -4.0   0.1         9   1.8e+04      14      25 ..     512     523 ..     506     526 .. 0.54

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.7e-06
    CTD_bind   1 kLnllYLaNdvlqnskrkqkdefapaFapvlpeafadaykkapekikkklkrllniWe 58 
                 kL+ +Y++++v++n+     + ++  F+++l ++ +++y   ++ ++ k+  l ++W 
  CCD24157.1  60 KLYAFYVLDSVCKNT----GSPYTIYFSRNLFSLYKKTYLLVDNVTRTKMITLFKLWL 113
                 89************7....399******************99***************5 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 9
    CTD_bind  14 nskrkqkdefap 25 
                  s+ kq+d+f++
  CCD24157.1 512 SSSNKQQDKFQK 523
                 334445455543 PP

>> TMEM43  Transmembrane protein 43
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.9   0.00012      0.24      16     119 ..     441     541 ..     432     549 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00012
      TMEM43  16 sggseetettYtYekeWrselidSseFkepegheNpssmpvesetqvaedvkvGaykLskelvekinaeeeltldsqsaqeiat.skeqknvklhggyi 113
                  g+s+e++++ +Y+ +W  +   +++ k  +  +N   +    +t++a++++  + +L +++  k+n++e ++l+s+s++++++ +k+ +n+ +h+++ 
  CCD24157.1 441 FGNSNEEKRSQSYHLDW--HFRINKRIKGTTATSNT--TGGATTTSTAKNIQSRNWYLHDTQWVKFNDDEIVSLKSSSNKQQDKfQKTTANIDIHSQAN 535
                 5678889999*******..45555666766777777..46788999*************************************88*********99876 PP

      TMEM43 114 Yfgksp 119
                   g++ 
  CCD24157.1 536 IPGENN 541
                 666555 PP

>> Borrelia_REV  Borrelia burgdorferi REV protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   3.6   0.00047      0.94      73     129 ..     172     230 ..     162     239 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00047
                   HHHHTTT---H.HHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHH-SSTTSH...HH CS
  Borrelia_REV  73 lkedlkditnakelkekllnlqklfqeklaakl..aalkavkvdieritdkdnddleks 129
                     e lkd  + ++l+ kll l +l qe    kl  +alk v+ +++++ ++d+  l+  
    CCD24157.1 172 TNERLKDQPDDQKLQTKLLVLAQLKQELQKGKLtvEALKQVQLQLRQVFAQDQQVLQER 230
                   4699**********************99888873369****************977654 PP

>> zf-C2HC_2  zinc-finger of a C2HC-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   1.4     0.056   1.1e+02       4      13 ..     433     442 ..     432     445 .. 0.85
   2 ?    5.7   0.1    0.0072        14       2      13 ..     597     608 ..     596     609 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.056
   zf-C2HC_2   4 pCpkCgRsFn 13 
                 +C  Cg +F+
  CCD24157.1 433 KCSTCGKRFG 442
                 7********4 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0072
   zf-C2HC_2   2 lvpCpkCgRsFn 13 
                 + +C +C+ s n
  CCD24157.1 597 TFQCSICKESVN 608
                 78******9988 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.6    0.0031       6.2       3      11 ..     433     441 ..     433     442 .. 0.91
   2 ?    3.3   0.5     0.044        87       2      10 ..     598     606 ..     597     606 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0031
   zf-C2H2_6   3 eCsvCsksF 11 
                 +Cs+C+k+F
  CCD24157.1 433 KCSTCGKRF 441
                 7******** PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.044
   zf-C2H2_6   2 heCsvCsks 10 
                 + Cs+C++s
  CCD24157.1 598 FQCSICKES 606
                 99****986 PP

>> ASFV_J13L  African swine fever virus J13L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.4   0.00058       1.2      66     110 ..     222     264 ..     217     299 .. 0.79
   2 ?    0.3   1.1      0.25     5e+02     156     183 ..     468     496 ..     462     499 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00058
   ASFV_J13L  66 ediqfinpyqdqqwaevtpqpgiakpagastasagkpvtdrpvtn 110
                 +d q ++    qq  + tpqp ++ p g++++s+    t+ p+ n
  CCD24157.1 222 QDQQVLQERSRQQQQGSTPQPNLSLPPGSTATSTNT--TNSPTPN 264
                 57788888899999**************99988754..4555555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.25
   ASFV_J13L 156 ttvttqnta.sqtmsaienlrqrstythk 183
                 tt+t++ t  + t s+ +n++ r+ y h 
  CCD24157.1 468 TTATSNTTGgATTTSTAKNIQSRNWYLHD 496
                 56665555424567888999999999985 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   4.7     0.021        43       4      25 ..     433     459 ..     431     459 .. 0.64
   2 ?    3.1   0.1     0.037        73       2      12 ..     597     607 ..     596     610 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.021
      zf_UBZ   4 lCerCgkeipes..elqE...HeDwHf 25 
                  C+ Cgk++  s  e+ +   H+DwHf
  CCD24157.1 433 KCSTCGKRFGNSneEKRSqsyHLDWHF 459
                 599999998544312222344*****9 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.037
      zf_UBZ   2 tylCerCgkei 12 
                 t++C+ C++++
  CCD24157.1 597 TFQCSICKESV 607
                 89******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1650  (0.0920297); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 4364.64
//
Query:       CCD24158.1  [L=576]
Description: hypothetical protein NDAI_0C04990, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.14   13.2   1.4       0.81   10.8   1.4    2.3  1  DUF3298     Protein of unknown function (DUF3298)
       0.16   12.6   2.5       0.38   11.4   1.4    2.3  1  5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold


Domain annotation for each model (and alignments):
>> DUF3298  Protein of unknown function (DUF3298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.4     9e-05      0.81       9      50 ..     318     362 ..     313     374 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9e-05
                 .HHHHHHHHHHHHHHHHTCH-TTS-HCCCCTT...TTTSS-TTTS CS
     DUF3298   9 aylqrlakiikeqikkenekqqedeyaglper...rdkedilgyq 50 
                 +++++++k+i+e+i++en+++qe+e+++++e+       +i++++
  CCD24158.1 318 NGEDPFNKYIEEDIEEENANRQEGEEEEEEEEeeeDGSSTIQNDK 362
                 57899*****************99999999876654444444444 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.4   4.3e-05      0.38       7      90 ..     142     228 ..     136     235 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.3e-05
  5_3_exonuc   7 idlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenldelke....kklkekLeenkeearlskkLatiktdvpleleledlk 90 
                  + ++L+ +s ++i   +g+ + tA kL++  g   ++l+n +++ +    + +++kL+++ +e +l  k+ + + +++ + e  +lk
  CCD24158.1 142 SNKAGLMAESMEKIAKLKGCNDDTADKLISASGLF-HLLSNHEQIMSsnisNLMNDKLRDEIDEFKLKSKVLENNFKIKSKEESLKLK 228
                 556799************************98755.5555555544423334588999999999999988866555554444433344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2051  (0.114396); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 3737.96
//
Query:       CCD24159.1  [L=198]
Description: hypothetical protein NDAI_0C05000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-35  119.1   0.2      1e-34  118.4   0.2    1.3  1  DUF3767          Protein of unknown function (DUF3767)
  ------ inclusion threshold ------
       0.05   12.7   0.0      0.067   12.3   0.0    1.1  1  Methyltransf_20  Putative methyltransferase


Domain annotation for each model (and alignments):
>> DUF3767  Protein of unknown function (DUF3767)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.2   1.1e-38     1e-34       2     100 ..      67     167 ..      66     168 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 1.1e-38
     DUF3767   2 aslsdavktisledfs..klvsiPCaRdslltGigagavvGglrfvlkknvakaaNWavgafllgsivayeqCrarrrkekekmkravevvkekkakke 98 
                 ++l++a+++i+++df+  kl siPC+Rds+++G+++++++ ++ f+++kn+ ka+NW++g+++lgs+v++eqCr++r+++++ ++ a+++vk+k+++++
  CCD24159.1  67 QTLKQAWNSIQWKDFNleKLSSIPCFRDSTMVGFSTMFITSSIIFIYSKNPIKATNWGLGSLILGSMVGWEQCRLKRKHSFQIAQLAINTVKAKEKPMM 165
                 689************999******************************************************************************998 PP

     DUF3767  99 ke 100
                 ++
  CCD24159.1 166 NK 167
                 75 PP

>> Methyltransf_20  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.5e-06     0.067      36     135 ..      66     164 ..      43     168 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.5e-06
  Methyltransf_20  36 aplkalslkklywaatr.aslklggllseGiklGletGfdsGstldyvyrnkarglg..plGrlidrqyldaiGWrGirqrkvhleellekave 126
                      + + ++++++++w+  +  +l  +  + +   +G +t f + s++ ++y +++   +   lG li       +GW   r++++h  ++ + a++
       CCD24159.1  66 SQTLKQAWNSIQWKDFNlEKLSSIPCFRDSTMVGFSTMFIT-SSIIFIYSKNPIKATnwGLGSLIL---GSMVGWEQCRLKRKHSFQIAQLAIN 155
                      445566777788875541578899999999********975.6788***99997766235677774...4569********************* PP

  Methyltransf_20 127 rlkaegrpv 135
                       +ka+++p+
       CCD24159.1 156 TVKAKEKPM 164
                      ***999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1320  (0.0736237); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1638.13
//
Query:       CCD24160.1  [L=537]
Description: hypothetical protein NDAI_0C05010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-70  238.1   0.2    3.3e-70  237.1   0.0    1.5  2  Aminotran_1_2    Aminotransferase class I and II
    9.3e-09   34.3   0.0    1.8e-08   33.4   0.0    1.3  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    9.1e-05   21.9   0.2    0.00022   20.7   0.2    1.6  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    0.00045   19.3   0.0     0.0022   17.0   0.0    2.0  2  Aminotran_5      Aminotransferase class-V
     0.0093   15.3   0.0      0.021   14.1   0.0    1.5  1  Beta_elim_lyase  Beta-eliminating lyase
  ------ inclusion threshold ------
       0.25   11.3  11.5       0.43   10.6  11.5    1.2  1  Mucin            Mucin-like glycoprotein
       0.95   10.0   9.1          2    9.0   9.1    1.4  1  Alpha_GJ         Alphavirus glycoprotein J


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.62   1.6e+03     233     288 ..      26      87 ..      11      92 .. 0.66
   2 !  237.1   0.0   1.3e-73   3.3e-70       2     363 .]     108     469 ..     107     469 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.62
                    EEEEHHHHHHHHHHHHHHTS...SHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHH CS
  Aminotran_1_2 233 ilgnaavvsqlrklsrpfls...ssllqaavaaalsdallkqs...eleemrqrlqkrrkel 288
                    +++naa + +++ +s++      s+  +++v+ a++ +++  +   ++e +++rl k+ +++
     CCD24160.1  26 TYANAATATAAAAASATAAGtttSTNNAPIVNHATQETPFDYNgliDNELRKKRLDKSYRYF 87 
                    55555444444333333333334888888888888888877667777777778877777776 PP

  == domain 2  score: 237.1 bits;  conditional E-value: 1.3e-73
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH..HHHHHTSTTST-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke..galaggtlneygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgde 95 
                    +v+ ++sn+yl +s++ ++ + +k + +  ga+aggt+n+ g++++  ele +la +++        +e+a+v++s++ a++++l+ l ++ ++ +
     CCD24160.1 108 KVTVWCSNDYLALSKNQQVINKMKLTLDkyGAGAGGTRNIAGHNKLTMELEAELATLHK--------KEGALVFSSCFVANDAVLTLLGEKIKDLV 195
                    7899************9999999999999******************************........**********************9999999 PP

                    EEEEESS-THHHHHHHHTTSE.EEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETT CS
  Aminotran_1_2  96 ilvpdptyasyknilrlsgge.vvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaY 190
                    i+++++++as++ ++++++    + ++       h+dl++le+ l+  p+  +  k+i++es++++ G+va+ e++++l   a+ky++l+f+De++
     CCD24160.1 196 IFSDELNHASMIIGIKHAKPVmKHIFK-------HNDLDELERMLQMYPKSTP--KLIAFESVYSMAGSVADIEKICDL---AEKYGCLTFLDEVH 279
                    *******************99777778.......*************999999..************************...************** PP

                    TTCBSSSSHTHHH.................HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHH CS
  Aminotran_1_2 191 agfvfgsldavat.................ranveeepnllivgslsKafGlaGeRvGyilgnaavvsqlrklsrpflsssllqaavaaalsdall 269
                    a++ +g+++a  +                    v+++++ +i+g+l+K+fG +G   Gy++++++++++ r+ + +f++++ l++av+a +  a +
     CCD24160.1 280 AVGLYGPHGAGVAehvdfeshrqvgiksteFKSVMDRVD-MITGTLGKSFGTVG---GYVAASSKLIDWFRSYAPGFIFTTTLPPAVMAGAAEAIR 371
                    ******997766678899999999999888888888888.**************...*************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTS...TTEEEEEC.TTS-HHHHHHHHH CS
  Aminotran_1_2 270 kqseleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftv...pgrlRitv.Aglteeeleelve 361
                     q+++ + rq  q+++ +++++L++lg++v++++s+++++  +++  ak++s+ L e++++yv++++ +tv   ++rlRit+ +g+++e  + l++
     CCD24160.1 372 FQRSHLNLRQDQQRNTAYVKNGLKQLGIPVIPNPSHIVPILIGNPDLAKQASDILMEKHKIYVQAINFPTVsrgTERLRITPtPGHDNELSDILLN 467
                    *********************************************************************************************999 PP

                    HH CS
  Aminotran_1_2 362 al 363
                    a+
     CCD24160.1 468 AI 469
                    87 PP

>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   6.9e-12   1.8e-08      51     179 ..     151     282 ..     147     287 .. 0.80

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 6.9e-12
                      -HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-T.TEEEEEESTSSHHHHHH.HHHTHHHTTCEEEEESTTSHHHHHHHCCT.TEEEE CS
  Cys_Met_Meta_PP  51 nptrsvleeriaaLeggeaalavssGmaAiaaailallka.GdeivvsddlYggtqrl.lkkvlkklgievkfvdtsdleelekaike.ntklv 141
                      n  +  le+++a+L++ e al++ss   A +a+++ l ++  d ++ sd+l   +  + +k+  + ++  +k+ d ++le++ ++  +   kl+
       CCD24160.1 151 NKLTMELEAELATLHKKEGALVFSSCFVANDAVLTLLGEKiKDLVIFSDELNHASMIIgIKHAKPVMKHIFKHNDLDELERMLQMYPKsTPKLI 244
                      556678************************8777777777455667777776665544256666667777788888888877666654377*** PP

                      EEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHT CS
  Cys_Met_Meta_PP 142 ylEtptnpllkvvDiekiaklakkagvlvvvDntfasp 179
                       +E++ +   +v+Dieki++la k g+l+++D + a +
       CCD24160.1 245 AFESVYSMAGSVADIEKICDLAEKYGCLTFLDEVHAVG 282
                      ********************************987766 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.2   8.5e-08   0.00022      22     151 ..     151     283 ..     142     304 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 8.5e-08
                      SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHHHHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TTE.EE CS
  DegT_DnrJ_EryC1  22 gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatanavlelgakpvfvDvdpdtynidpaaieaaitert.ka 114
                      ++ + e+E+++a+ ++++ a+ +ss+  A+  +L+ lg + +d VI     + a++  +    akpv+  + ++    + +++ +   + t k 
       CCD24160.1 151 NKLTMELEAELATLHKKEGALVFSSCFVANDAVLTLLGEKIKDLVIFSDELNHASM-IIGIKHAKPVMKHIFKHNDLDELERMLQMYPKSTpKL 243
                      566789********************************************999986.4455579****99986654334444444444444755 PP

                      EE...EB-GGGB---HHHHHHHHHHCT-EEEEE-TT-TT- CS
  DegT_DnrJ_EryC1 115 Il...pVhlyGqvadmdalkaiaakhglkvieDaAhAlGa 151
                      I    +  ++G vad++++ ++a+k+g   + D  hA+G 
       CCD24160.1 244 IAfesVYSMAGSVADIEKICDLAEKYGCLTFLDEVHAVGL 283
                      5422245789****************************95 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   8.4e-07    0.0022     125     181 ..     222     282 ..     121     286 .. 0.63
   2 ?   -0.8   0.0      0.22   5.6e+02     252     294 ..     357     397 ..     330     435 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.4e-07
                  SCBEGGGHHHH-....-TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTT CS
  Aminotran_5 125 geldldelekll....nektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavg 181
                  ++ dldele  l    + ++kl+a+  v ++ G + ++e+i++la k+g+l+++D + avg
   CCD24160.1 222 KHNDLDELERMLqmypKSTPKLIAFESVYSMAGSVADIEKICDLAEKYGCLTFLDEVHAVG 282
                  34455566665544457899************************************99986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.22
                  S--HHHHHHHHHHHHHH.HCHHHHHHHHHHHHHHHHHHHHHCTS CS
  Aminotran_5 252 Tpnvagiiglgaaleyl.eeigleaiekhekelaeyllerlksl 294
                  T + a + g ++a+++  + ++l++ ++++++     +++lk+l
   CCD24160.1 357 TLPPAVMAGAAEAIRFQrSHLNLRQDQQRNTAYV---KNGLKQL 397
                  8889999999999999977777777766666554...4444444 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   8.1e-06     0.021      28     239 ..     148     400 ..     135     438 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.1e-06
                      CT--HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHCC--EEEEE-EBTTTBE-HHHHHHHS--S CS
  Beta_elim_lyase  28 YgedktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetgaiaelagvklrdlknkeaGkmdlekleaaikev 121
                       g +k +++Le+++a l  ke+al + +   An   l++l ++ +  ++ ++   h     +i++ + v ++ + +      dl++le++++  
       CCD24160.1 148 AGHNKLTMELEAELATLHKKEGALVFSSCFVANDAVLTLLGEKIKDLVIFSDELNHASMIIGIKHAKPV-MKHIFK----HNDLDELERMLQMY 236
                      588999**********************************96654443333333344444555555555.333333....448**********8 PP

                      -TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHH......................HHHTS-CHHHHTTSSEEE CS
  Beta_elim_lyase 122 gaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaa......................kslgeivkemfsyvDsvt 193
                       +    +kli  +    + +G   s++ ++++ ++a+kyg   +lD      a+                         + + k++++ vD++t
       CCD24160.1 237 PK--STPKLIAFESVYSM-AG---SVADIEKICDLAEKYGCLTFLDEVH---AVglygphgagvaehvdfeshrqvGIKSTEFKSVMDRVDMIT 321
                      88..89999999999987.44...77889999**************754...4444488888888888**999774223346788899999999 PP

                      EESSSTT--SS-EEEEE-HH......................................HHHHHHHHHHHHT---SSTHHH CS
  Beta_elim_lyase 194 mslkKdllanvGgvlafrddel..................................edylaerveqrkylggglrqagvl 239
                        l K  ++ vGg +a + + +                                   +  +   +   y+ +gl+q g++
       CCD24160.1 322 GTLGKSFGT-VGGYVAASSKLIdwfrsyapgfiftttlppavmagaaeairfqrshLNLRQDQQRNTAYVKNGLKQLGIP 400
                      9*****999.******9999667777777777777777766666666666666433222222233344555566666655 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6  11.5   0.00017      0.43      45     107 ..       7      69 ..       4      83 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00017
       Mucin  45 ltttttttkppttttttttasttittkttkattttttttttttateaPsdavttaeaPttttt 107
                 + t+t + +++t + t + + +   t t+ a++++t+  ttt++ +aP  + +t e P   ++
  CCD24160.1   7 KSTPTLSKRTSTFSITKKYTYANAATATAAAAASATAAGTTTSTNNAPIVNHATQETPFDYNG 69 
                 56666666666666666644444466777777777888899999*****99999999976555 PP

>> Alpha_GJ  Alphavirus glycoprotein J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   9.1    0.0008         2      36      79 ..      22      67 ..       7      74 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0008
    Alpha_GJ 36 ana...aavanatganatsaaaastiaatvgapptdstvaaetPgpf 79
                ++    a++a+at+a a+sa+aa+t+++t +ap  +  +++etP  +
  CCD24160.1 22 TKKytyANAATATAAAAASATAAGTTTSTNNAPIVNH-ATQETPFDY 67
                33333477899999999****************9888.7999*9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      698  (0.0389313); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:01.60
# Mc/sec: 1017.50
//
Query:       CCD24161.1  [L=315]
Description: hypothetical protein NDAI_0C05020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-36  124.1   4.4    7.5e-36  123.5   4.4    1.3  1  Reticulon   Reticulon
  ------ inclusion threshold ------
      0.094   13.0   2.5       0.67   10.3   0.2    2.5  2  NUC130_3NT  NUC130/3NT domain
       0.15   12.2   5.8       0.24   11.5   1.3    2.5  2  APC_N_CC    Coiled-coil N-terminus of APC, dimerisation domai


Domain annotation for each model (and alignments):
>> Reticulon  Reticulon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   4.4   1.2e-39   7.5e-36       2     156 ..      25     181 ..      24     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 1.2e-39
   Reticulon   2 adlllWrnkkksgivlgglllllllfellgysllslvsklllllllvlflwaeyagllnkskp..........pepelelseesvreladsllellnka 90 
                 +d+llWrn+ +sg+++ggll++ll+++ +  +l+++++++++++ll++ +  e++++l + ++          +++++ + + +++e++++l       
  CCD24161.1  25 CDILLWRNPIESGKLFGGLLVSLLVLKKV--NLITFFLRAAYTILLTTGS-IEFISKLFL-GQglitkygikeCPNTVGFLKPKIDEILKQL----PVK 115
                 7****************************..*******************.999999999.66688888888888***********998888....999 PP

   Reticulon  91 lselrrlalgedlklflkvalllyilsilgslfslltllyigvvlaftvPllYekyedeIdalvek 156
                 ++++r+l+++ ++k+++k+a++l++l++l+s+fs++tll++gv++aft+P+ Y+ y++eId+++ +
  CCD24161.1 116 QAKMRKLVFAYSPKNTFKAAIVLFLLHKLFSWFSVWTLLFVGVISAFTLPITYKIYQKEIDTILTQ 181
                 *************************************************************99876 PP

>> NUC130_3NT  NUC130/3NT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   0.00011      0.67       7      35 ..     169     197 ..     167     211 .. 0.86
   2 ?    1.9   0.1     0.048   2.8e+02      18      35 ..     291     308 ..     283     312 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
  NUC130_3NT   7 hcYpketkefpqeLselLlehhsvLhpdl 35 
                 + Y+ke+ +  ++L++lL++++++L+   
  CCD24161.1 169 KIYQKEIDTILTQLCQLLKQKSNELSKVA 197
                 68*********************998765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.048
  NUC130_3NT  18 qeLselLlehhsvLhpdl 35 
                 ++L++ L+e+ ++L+++l
  CCD24161.1 291 DQLTNELKESTQTLKQEL 308
                 799999999999999998 PP

>> APC_N_CC  Coiled-coil N-terminus of APC, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.03   1.8e+02      18      38 ..     180     200 ..     177     211 .. 0.84
   2 ?   11.5   1.3   4.1e-05      0.24      12      30 ..     296     314 ..     290     315 .] 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.03
    APC_N_CC  18 thlrrELedNSshLskLEtet 38 
                 t+l + L+  S+ Lsk   e 
  CCD24161.1 180 TQLCQLLKQKSNELSKVACEK 200
                 6788899*********87775 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.1e-05
    APC_N_CC  12 aLkkenthlrrELedNSsh 30 
                  Lk    +l++ELe+NS++
  CCD24161.1 296 ELKESTQTLKQELEENSNK 314
                 68999999*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1630  (0.0909142); expected 358.6 (0.02)
Passed bias filter:                      678  (0.0378158); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2333.92
//
Query:       CCD24162.1  [L=689]
Description: hypothetical protein NDAI_0C05030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.7e-109  366.9   0.1   1.4e-108  363.8   0.1    2.1  1  Aconitase    Aconitase family (aconitate hydratase)
    4.5e-33  114.3   1.4    7.8e-33  113.6   0.0    2.1  3  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.8   0.1  1.6e-112  1.4e-108       2     461 .]      23     454 ..      22     454 .. 0.89

  Alignments for each domain:
  == domain 1  score: 363.8 bits;  conditional E-value: 1.6e-112
   Aconitase   2 kiwdahlv...ee....egiayv...pdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefL 90 
                 ki+++ +v   +     +g +yv   p++++++d +++ al+ ++  +++v++ ++ ++t+dh++++                      e+n+++y+++
  CCD24162.1  23 KIVQSYAVnlpKGkivhSG-DYVsiqPAHCMSHDNSWPVALKFMQIGATRVKNNRQIVNTLDHDIQNM--------------------SEKNQTKYRNI 100
                 6666665533311333233.454556*************************99999999999999988....................3466699**** PP

   Aconitase  91 ksaakafgirvvppgqGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavi 189
                 +++ak++g++++p+g+GI Hq+++E+g+a+p ++ v++DSH++++gglG l+++v +++a+a++++ +++++ip v +v+l+G+l++ +  kD+++a++
  CCD24162.1 101 ENFAKKHGVDFYPAGRGIGHQIMVEEGYAFPLNMTVASDSHSNTYGGLGSLGTPVVRTDAAAIWATGQTWWQIPPVAKVELKGELPSTIAGKDIIVALC 199
                 *************************************************************************************************** PP

   Aconitase 190 gklrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgr.....eeaavlveaydkaqalf..elaadedaeydkvle 281
                 g ++k++v ++++Ef+G+ +e+L+++ r+TiaNM++E+GA +glfpvd++++++ +  +r     ++++   e+  k  ++   +++adeda+y+k l 
  CCD24162.1 200 GVFNKDQVLNHAIEFTGDSLEKLPIDYRLTIANMTTEWGALSGLFPVDKTLINWYH--DRlkkigPSHPRINEKTIKDLEIKaqTFKADEDAKYAKKLV 296
                 *******************************************************9..55445553333333444443333333689************ PP

   Aconitase 282 ldlstlepsvagpkrPqdavplselvkkefkeelekeaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaaglla..kavekglkvkpgvkt 378
                 +dlstl+ + +gp++++ + ++++l+k                          +++k+d+a+++SCTN++++d+ aaa++++     ++  kv+++v++
  CCD24162.1 297 IDLSTLTHYASGPNSVKISNTVKDLAK--------------------------QNIKIDKAYLVSCTNARLSDLDAAADIICptGDINRINKVADHVEF 369
                 **************9999988844432..........................4567*************************877778889******** PP

   Aconitase 379 svaPGSevvkayleaeGlleiLekaGfevvgagCstCig.nsdrleegeaivsssNRNFegRqg.pntrayLaSPelvvaaAlaG 461
                 ++a++S++v++ +++ G++++L kaG+  + +gC++Cig  ++ le+ge+++s++NRNF+gR+g +++ ayL SP++v+a+A+ G
  CCD24162.1 370 YIAAASSEVEKDARELGIWDKLLKAGCRPLPSGCGPCIGlGAGLLEAGEVGISATNRNFKGRMGsKDALAYLGSPAVVTASAILG 454
                 ***************************************************************8688999*************87 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.69   6.2e+03      30      59 ..      76     105 ..      64     125 .. 0.59
   2 ?   -3.7   0.0       1.6   1.4e+04      26      50 ..     266     290 ..     263     294 .. 0.72
   3 !  113.6   0.0   8.7e-37   7.8e-33      15     130 ..     494     615 ..     485     616 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.69
                  HCCCGGTTTCCCCTTTSBBSEEEETTTTEE CS
  Aconitase_C  30 egtianiglgnelveekrankttdlddgek 59 
                  +++++ ++ + +++ ek+  k+++ ++  k
   CCD24162.1  76 RQIVNTLDHDIQNMSEKNQTKYRNIENFAK 105
                  444455555556666666666665544444 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.6
                  CCHHHCCCGGTTTCCCCTTTSBBSE CS
  Aconitase_C  26 pkqfegtianiglgnelveekrank 50 
                  p+  e+ti+ ++++++ ++  +  k
   CCD24162.1 266 PRINEKTIKDLEIKAQTFKADEDAK 290
                  6667889999999999888655544 PP

  == domain 3  score: 113.6 bits;  conditional E-value: 8.7e-37
                  HHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEE.......EHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHHHTTEEEE CS
  Aconitase_C  15 eksnvdtdlkipkqfegtianiglgnelveekrankttdlddgeke.......dvvdaaerykkegaklvviagknfGeGSSRehAAkalrllGikav 105
                  e ++v++ +++p+++eg+++ ++++n ++++++++k+t++dd+ ke       +++da+++ k++  ++vv++ +nfG+GSSRe+AA+a++++Gi +v
   CCD24162.1 494 ETAAVEILEGFPRHIEGELVFCDADNVNTDGIYPGKYTYQDDVSKEtmakvcmENYDAEFQNKVKAGDIVVSG-FNFGTGSSREQAATAMLAKGIPLV 590
                  56899*************************************999999************************9.************************ PP

                  EES-B-HHHHHHHHHTT-EEEEEST CS
  Aconitase_C 106 iaeSFerIfennliknglLplefke 130
                  i++SF++If++n+i+n+lL+le+++
   CCD24162.1 591 ISGSFSNIFSRNSINNALLTLEIPA 615
                  **********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.32s 00:00:00.99 Elapsed: 00:00:00.50
# Mc/sec: 4179.12
//
Query:       CCD24163.1  [L=544]
Description: hypothetical protein NDAI_0C05040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 4197.84
//
Query:       CCD24164.1  [L=188]
Description: hypothetical protein NDAI_0C05050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-26   91.8   0.0    4.1e-26   91.5   0.0    1.0  1  Flavokinase  Riboflavin kinase


Domain annotation for each model (and alignments):
>> Flavokinase  Riboflavin kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.0   2.3e-30   4.1e-26      11     111 .]      28     176 ..      22     176 .. 0.92

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 2.3e-30
                  EES-SSCH.TTTT--EEEEE-S-B-G.....TSEEEEEEEE......................................EEEEEEEETTTSSE...EE CS
  Flavokinase  11 VvkGkkrG.relgfpTaNlelekllp.....kkGVYavrvk......................................gvaniGvrptfknk...vE 61 
                  +v G++rG ++lg+pTaN+e+++l +     + GVY+++++                                      +v+++G +p+++n+   +E
   CCD24164.1  28 IVCGFGRGsKDLGVPTANVEMSQLPAsmnslDLGVYFGFAQlrpvdkttsrvnrkdgkeveynygehlsekrgeldvlpMVLSVGKNPFYGNDfktAE 125
                  789*****************9444335666789**********************************************************976789* PP

                  EEET.T--S--TTSEEEEEEEEEEEE----SSHHHHHHHHHHHHHHHHHHH CS
  Flavokinase  62 vhil.dfsedlygkelrvellkflRpekkFdsleaLkaqikkDvekarell 111
                   hil +fs+++yg++++ ++l+++Rpe ++++ eaL+++i++D++ a++ l
   CCD24164.1 126 LHILhNFSHNFYGAQVKFNILGHIRPELNYTTKEALIKDINTDIDIAKRTL 176
                  ****56999*************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1416.18
//
Query:       CCD24165.1  [L=290]
Description: hypothetical protein NDAI_0C05060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-27   95.8   0.0      3e-27   94.6   0.0    1.6  1  Ribosomal_L5_C  ribosomal L5P family C-terminus
    7.1e-14   51.9   0.0    1.7e-13   50.7   0.0    1.6  1  Ribosomal_L5    Ribosomal protein L5


Domain annotation for each model (and alignments):
>> Ribosomal_L5_C  ribosomal L5P family C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   3.3e-31     3e-27       2      94 .]     191     287 ..     190     287 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 3.3e-31
  Ribosomal_L5_C   2 iGvkvtLrgekmyefldkllevvlprlrdFkGiskssfdgrGnvsfGikeqii..fpeieydkd..kgifGmditivttaktdeearallkelgi 92 
                     +G+kv+L g  m +fl++l e+vlpr+r++kGis++s+++ G +sfG++++ +  fpei+ ++d   ++fGm+i+i tta+tde++ral++++++
      CCD24165.1 191 MGAKVELSGYPMSQFLTTLAEIVLPRIREYKGISDKSGNRFGGLSFGLRPEDVrfFPEIDSNQDlwPRTFGMHININTTAQTDEQTRALVSAFQL 285
                     8*****************************************************9***********888************************** PP

  Ribosomal_L5_C  93 pf 94 
                     pf
      CCD24165.1 286 PF 287
                     *9 PP

>> Ribosomal_L5  Ribosomal protein L5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   1.9e-17   1.7e-13       4      57 .]     133     186 ..     132     186 .. 0.98

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 1.9e-17
                   TS-EEEEEEEEEE-SSSSSCHHHHHCCHHHHCCCHSS--EECC--TTCTTTCSC CS
  Ribosomal_L5   4 qvPrleKivinmgvGeagedkkllekaakeLaeItGQkPvvtkakksianFkiR 57 
                   ++P+++ iv+n++v+ea+e++ l  +aa +L++ItG kP + ++k++++++k+R
    CCD24165.1 133 NIPEIKNIVLNCYVKEAKENQLLAISAALQLQQITGCKPKMIYSKSDVPSWKVR 186
                   58***************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 2070.53
//
Query:       CCD24166.1  [L=973]
Description: hypothetical protein NDAI_0C05070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-105  354.2  16.2     2e-105  353.4  16.2    1.3  1  Adaptin_N        Adaptin N terminal region
    5.1e-53  178.7   0.6    1.5e-52  177.2   0.6    1.9  1  Coatamer_beta_C  Coatomer beta C-terminal region
    4.7e-52  175.3   0.0    1.2e-51  174.0   0.0    1.8  1  Coatomer_b_Cpla  Coatomer beta subunit appendage platform
    7.9e-06   26.0   0.2    7.9e-06   26.0   0.2    3.5  3  Cnd1             non-SMC mitotic condensation complex subunit
    1.1e-05   25.8   6.4       0.92    9.9   0.0    4.8  5  HEAT_2           HEAT repeats
     0.0025   17.9   1.4        6.4    7.3   0.0    5.2  5  HEAT             HEAT repeat
  ------ inclusion threshold ------
      0.025   14.9   0.1      0.063   13.6   0.1    1.6  1  Alpha_adaptinC2  Adaptin C-terminal domain
      0.057   12.8   9.2        2.7    7.3   0.4    4.0  4  DUF5578          Family of unknown function (DUF5578)
       0.13   12.7   0.0       0.61   10.4   0.0    2.3  1  TAF6_C           TAF6 C-terminal HEAT repeat domain


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.4  16.2  9.9e-109    2e-105       3     507 ..      22     532 ..      20     542 .. 0.94

  Alignments for each domain:
  == domain 1  score: 353.4 bits;  conditional E-value: 9.9e-109
                 HHCCHHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCC.SS-CHHHHHHHHHHHHHCTTSCC.....HHCCCCHHHHHHCCSSSHHH CS
   Adaptin_N   3 kriqqelaeilnsnkdddekkkeavkkliylialGedvsflffevvklva.skdfelKrlvYlylellaeesed.....lalLvtnslqkDlkdpnqli 95 
                 +++ +++++ l++   +d++k+ ++k +++++++G+++++l+++++++v+ skd  lK+l+Y+y+e++++ +++     +++Lv+n++q+Dl++pn++i
  CCD24166.1  22 SYSVSDFQKSLEKG--SDNEKISTMKAILATMLEGNPLPELLMHIIRFVMpSKDKRLKKLLYFYWEIVPKLDQEgklrhEMILVCNAIQHDLQHPNEYI 118
                 577899999*****..*********************************************************************************** PP

                 HHHHHHHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCT.T-SSHHHHHHHHHHHHHHHCCCCCCCHHHHHH CS
   Adaptin_N  96 rglALrvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikell.sdkdpgvvlaAvalleeikkndrlllkllpkl 193
                 rg++Lr+L+++r++el+e+++p + ++l+ r++yvrk A+la+l +y ++++ll++   + i   l +++dp+++++A+ +l ++   dr+  k+l++l
  CCD24166.1 119 RGNTLRFLTKLRESELLEQMVPSVLQCLQYRHAYVRKYAILAVLSIYNVSEHLLPDA-KDIINTFLvAETDPICKRNAFLALSQL---DRE--KALEYL 211
                 ******************************************************996.555555448******************...999..99**** PP

                 HCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG.CSSCHHHHHHHHHCCHCCCCSTHHHCCHHCHHHHHH.SSCCTCHHHHHCH CS
   Adaptin_N 194 vrrLcnllteldpwlqvkiiklltrlarqepeerskkellesllnllq.ssnnaVlletvnlivelapknelivlavnaLvrlls.skdenlryvaLrt 290
                   ++ n+   +dp+lq+ +++++++ a q+p ++  +++++ ll+ll   +++ V++et+ +++ l ++++++   +++L++l    +d+n+++++L++
  CCD24166.1 212 DANIANI-DGVDPLLQIAFVEFIRSDATQTPLLK--SQYVDLLLELLTsATADEVIFETALALTVLTSNASALITTATKLIDLAVkVSDNNVKLIVLDR 307
                 *****99.9*************************..89**********67799******************************999************* PP

                 HHHHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHHHHHHHHHHT.....TSSXXHH..HHHHHHHHHHHHHHHSCCHHHHHHHHH CS
   Adaptin_N 291 llkivkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvkeivkeLkkyv.....kevaded..fksklvkaIgrlaekfatdaewvldvl 382
                 ++ i +++p a+++l+l++ ++ +++d ++r+kald+ ++lv+++N++ +v+ Lkk++     +++ d++  +++ l+k+I+ +a++f ++ ++v++ l
  CCD24166.1 308 IQDINTSNPGALEELTLDLLRILNSEDLDVRSKALDIAMDLVTSRNAEDVVQLLKKEIqttvsNSANDKSleYRELLIKTIRGIAIRFSEMSANVVSLL 406
                 *********************************************************987765555555599*************************** PP

                 HHHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT....HHHHHHCTTTTTTTSXHHHHHHHHHHHHH CS
   Adaptin_N 383 lellslsgesvkdeivevirdliqkvpelheeiiekLaellekieseearaaaiWllGeygelvsnte.sasdllrslaekfvlesekvklqiltalvK 480
                 l+l s  ++++++ i+++++++++k+p+l++e +++L++ l +i+s++a+++a+W++Gey+    +++ +++++ + + e+++l+ e  kl+  +    
  CCD24166.1 407 LDLVSELNSTAASGIISFVKEVMEKYPQLRQELLNHLLNSLVNIKSAKAYRGALWVIGEYALTDNEIQnCWKHIRSNVGEVPILQAERKKLNKTNDESN 505
                 *************************************************************88888888**********************98888888 PP

                 HHHCXGCC.THXHHHHHHHHHHH.XXSH CS
   Adaptin_N 481 lyltspdketqekliqlvlslat.ssdl 507
                  ++ ++ k +   +i    ++at s+ +
  CCD24166.1 506 EGEEQKHK-QAGPVILPDGTYATeSAFD 532
                 88777644.4469999999999954444 PP

>> Coatamer_beta_C  Coatomer beta C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.2   0.6   7.5e-56   1.5e-52       2     139 ..     685     823 ..     684     824 .. 0.95

  Alignments for each domain:
  == domain 1  score: 177.2 bits;  conditional E-value: 7.5e-56
  Coatamer_beta_C   2 ddlisfrqlkekkelseeeeedlveedlsqatgakkk...eeefasklkkvvqLtGfsDpvYaEayvkvnqfDivLdvlivNqtketLqnltve 92 
                      +++++frq+ +++  s+  ++d++eedl+ at+++++   +++++s+lkk+v+LtGfsDpvYaEa+++ nqfD+vLdvl+vNqtketL+nl+v+
       CCD24166.1 685 EKAVMFRQFINAD--SNVVQKDSIEEDLELATNGDSAalkRRTMTSSLKKIVPLTGFSDPVYAEACITNNQFDVVLDVLLVNQTKETLKNLHVQ 776
                      7899******966..67777899********99998888899999************************************************* PP

  Coatamer_beta_C  93 latlgdlklvekpqsvtlaphdfakikatvkvsstetGvifGnivYd 139
                      +atlgdlk++++p+++++ ph+f++i++tvkvss++tGvifGni+Yd
       CCD24166.1 777 FATLGDLKIIDNPPKTNVIPHGFHRITITVKVSSADTGVIFGNIIYD 823
                      **********************************************9 PP

>> Coatomer_b_Cpla  Coatomer beta subunit appendage platform
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.0   0.0     6e-55   1.2e-51       1     128 []     829     958 ..     829     958 .. 0.97

  Alignments for each domain:
  == domain 1  score: 174.0 bits;  conditional E-value: 6e-55
  Coatomer_b_Cpla   1 drnvvilndikidimdyikpakiseeeFremWaefeWEnkiavktkltdlkeyleelvkktnmklltpeeeleee.aeflsanlyaksvfgeda 93 
                      d+++vilnd++idimdyikpa++++++Fr+mW++feWEnki+vk+ l +l++yl+elvk tnm +ltp+e+l ee ++fls+nlya+s fgeda
       CCD24166.1 829 DARYVILNDVHIDIMDYIKPARTDDDTFRTMWNAFEWENKISVKSALPTLHTYLNELVKGTNMGILTPTEALGEEdSRFLSCNLYARSSFGEDA 922
                      6789****************************************************************99998877****************** PP

  Coatomer_b_Cpla  94 lanvsiekee.egkisgvvRiRsktqgialslgdki 128
                      lan++ie++  ++++ g+vRiRsk qg+alslgd++
       CCD24166.1 923 LANLCIERNPtTNEVVGYVRIRSKGQGLALSLGDRV 958
                      ********99899*********************96 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.2     4e-09   7.9e-06       2      90 ..     118     207 ..     117     228 .. 0.80
   2 ?    0.3   2.3      0.32   6.3e+02      41     149 ..     267     369 ..     243     377 .. 0.67
   3 ?    2.1   3.2     0.089   1.8e+02      19     152 ..     319     454 ..     312     463 .. 0.61

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4e-09
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselakll.eDenprVvanalaalteisekse 90 
                 iR++ +r l+ +r ++l+e++v+ + ++L+ +++yVRk a+++v+ +  +++ +  + +  + +++ l  +++p    na +al+++ +++ 
  CCD24166.1 118 IRGNTLRFLTKLRESELLEQMVPSVLQCLQYRHAYVRKYAILAVLSIynVSEHLLPDAK--DIINTFLvAETDPICKRNAFLALSQLDREKA 207
                 9**********************************************554444444444..5555555488888889999999998877654 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.32
        Cnd1  41 aaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslve 139
                 +a++++ L +n         + +  +++ ++++V   +l  +++i++ ++ a+ +l+ d++  l+++    + + + + l++ ++ +++ +   e++v+
  CCD24166.1 267 TALALTVLTSNASALITTATKLIDLAVKVSDNNVKLIVLDRIQDINTSNPGALEELTLDLLRILNSE----DLDVRSKALDIAMDLVTSRNA--EDVVQ 359
                 5566666655544333333333444444445556666677788888888888888888888888854....666777777777777776666..77777 PP

        Cnd1 140 klcprlqhan 149
                  l +++q++ 
  CCD24166.1 360 LLKKEIQTTV 369
                 7777777665 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.089
        Cnd1  19 veylvepLrkrLkDedpyVRktaaivvakL.ilndmvk.....ekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnec 111
                 +e+l+ +L + L+ ed  VR  a+ +   L  +++        +k++  ++ +  +D++ + +++ +  +  i+ +    + ++  +++s l+d   e+
  CCD24166.1 319 LEELTLDLLRILNSEDLDVRSKALDIAMDLvTSRNAEDvvqllKKEIQTTVSNSANDKSLEYRELLIKTIRGIAIR----FSEMSANVVSLLLDLVSEL 413
                 6888888888888888888888888888886333333300011333444444444555555555555555555555....3444555555555555566 PP

        Cnd1 112 sewgqitilefLlsyipkdkqeaeslveklcprlqhansav 152
                 +  +   i++f+ + ++k  q  ++l++ l + l + +sa+
  CCD24166.1 414 NSTAASGIISFVKEVMEKYPQLRQELLNHLLNSLVNIKSAK 454
                 66667777777777777777767789998888888877776 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00046      0.92      40      86 ..     111     160 ..     103     163 .. 0.73
   2 !    6.5   0.1    0.0056        11      30      69 ..     173     213 ..     162     228 .. 0.83
   3 ?    1.2   0.2      0.25   5.1e+02      31      56 ..     246     272 ..     211     283 .. 0.63
   4 !    6.7   0.8    0.0047       9.4       3      69 ..     287     363 ..     285     375 .. 0.72
   5 ?   -3.2   0.0       5.8   1.2e+04       2      28 ..     441     467 ..     440     472 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00046
      HEAT_2  40 lededpavRraaaeaLgaigd....pealpaLkellddddddvvReaAaea 86 
                 l+++++++R +  + L ++++    ++ +p+ +++l+  ++++vR  A+ a
  CCD24166.1 111 LQHPNEYIRGNTLRFLTKLREsellEQMVPSVLQCLQY-RHAYVRKYAILA 160
                 78889999999999999988433447788999998876.566667777766 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0056
      HEAT_2  30 pealpaLvell.ededpavRraaaeaLgaigdpealpaLke 69 
                 p+a +++  +l   +dp   r+a  aL+++++++al+ L +
  CCD24166.1 173 PDAKDIINTFLvAETDPICKRNAFLALSQLDREKALEYLDA 213
                 566677777675789999******************99976 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.25
      HEAT_2  31 ealpaLvelled.edpavRraaaeaLg 56 
                 +++++L+ell++ +  +v  + a aL 
  CCD24166.1 246 QYVDLLLELLTSaTADEVIFETALALT 272
                 678888888854255677777777776 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0047
      HEAT_2   3 aLlqalendpdpevrraairaLgrignp......ealpaLvellededpavRraaaeaLgai....gdpealpaLke 69 
                 +L+ ++++ +d +v+  +++ + +i++       e+   L+++l++ed +vR  a + +  +      ++++++Lk+
  CCD24166.1 287 KLIDLAVKVSDNNVKLIVLDRIQDINTSnpgaleELTLDLLRILNSEDLDVRSKALDIAMDLvtsrNAEDVVQLLKK 363
                 67888888889999999999999776544455556677888999************977655222234666666665 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 5.8
      HEAT_2   2 daLlqalendpdpevrraairaLgrig 28 
                 ++Ll+ l+n ++ +  r a++++g+++
  CCD24166.1 441 NHLLNSLVNIKSAKAYRGALWVIGEYA 467
                 688888888889999999999999775 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.84   1.7e+03       4      26 ..     106     128 ..     103     129 .. 0.81
   2 !    7.3   0.0    0.0032       6.4       2      28 ..     139     165 ..     138     168 .. 0.90
   3 ?    0.7   0.1      0.42   8.5e+02       3      29 ..     249     276 ..     248     278 .. 0.86
   4 ?    2.3   0.1      0.13   2.7e+02       5      21 ..     326     342 ..     324     349 .. 0.88
   5 ?   -0.6   0.0       1.1   2.3e+03       7      28 ..     371     392 ..     366     393 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.84
                 HHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLga 26 
                 ++++ l++p+  +R ++++ L++
  CCD24166.1 106 AIQHDLQHPNEYIRGNTLRFLTK 128
                 677779********999988765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0032
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 +P +l++l+  ++ VR+ A++a+  ++
  CCD24166.1 139 VPSVLQCLQYRHAYVRKYAILAVLSIY 165
                 799******************998776 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.42
                 HHHHHHH.T-SSHHHHHHHHHHHHHHHH CS
        HEAT   3 Plllkll.sDpspeVReaAakaLgalae 29 
                 +lll+ll s ++ eV   +a+aL+ l +
  CCD24166.1 249 DLLLELLtSATADEVIFETALALTVLTS 276
                 689***97889999*9999999999887 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.13
                 HHHHHT-SSHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAa 21 
                 ll+ l++++ +VR+ A+
  CCD24166.1 326 LLRILNSEDLDVRSKAL 342
                 67789*********997 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 1.1
                 HHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgala 28 
                 +  +D+s e Re  +k++  +a
  CCD24166.1 371 NSANDKSLEYRELLIKTIRGIA 392
                 4569*********999998876 PP

>> Alpha_adaptinC2  Adaptin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   3.2e-05     0.063      22      81 ..     752     810 ..     745     816 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.2e-05
                      STTEEEEEEEEEE-SSS-EEEEEEEEEEBTTCEEEEEEES-S-B-TTCEEEEEEEEEEES CS
  Alpha_adaptinC2  22 rpgqiritlsftNkssqpisnfsfqaavpkslklqlqppsstvlppnpggqitqvllien 81 
                      ++ ++++++ + N+++++++n++ q+a    lk+  +pp+++v+p ++   it +++++ 
       CCD24166.1 752 NQFDVVLDVLLVNQTKETLKNLHVQFATLGDLKIIDNPPKTNVIP-HGFHRITITVKVSS 810
                      5556899999***********************************.45888888888876 PP

>> DUF5578  Family of unknown function (DUF5578)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.021        42     145     181 ..      21      57 ..      18     147 .. 0.73
   2 ?   -1.0   0.0      0.48   9.6e+02     205     259 ..     119     172 ..      77     179 .. 0.79
   3 ?    5.1   0.5    0.0065        13     201     259 ..     300     358 ..     244     367 .. 0.74
   4 ?    7.3   0.4    0.0014       2.7     200     266 ..     379     447 ..     362     449 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.021
     DUF5578 145 EsygvravaeclakskseetqeeaqklleslaegnPk 181
                 Esy v    + l k + +e  ++++++l ++ egnP 
  CCD24166.1  21 ESYSVSDFQKSLEKGSDNEKISTMKAILATMLEGNPL 57 
                 9**********************************95 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.48
     DUF5578 205 alqtlrvvqeivkeak.psivepllelLkslhlevqyeaielikelmstevraall 259
                   +tlr + +  ++    ++v ++l+ L+  h  v++ ai     l  ++v+++ll
  CCD24166.1 119 RGNTLRFLTKLRESELlEQMVPSVLQCLQYRHAYVRKYAIL--AVLSIYNVSEHLL 172
                 557888888777665548899999999*9999999988764..4455566666665 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0065
     DUF5578 201 aqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelmstevraall 259
                  + ++l+ ++ ++++ + a   +   ll +L+s +l+v+++a+++  +l+++  +++++
  CCD24166.1 300 VKLIVLDRIQDINTSNPGALEELTLDLLRILNSEDLDVRSKALDIAMDLVTSRNAEDVV 358
                 344456888888888899999999999*******************9999774444433 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0014
     DUF5578 200 kaqqlalqtlrvvqeivkeakpsivepllelLkslhlevqyeaielikelmst..evraallkglvalL 266
                 + + l ++t+r +  + +e   ++v+ ll+l+++l++   +  i+++ke+m++  ++r++ll++l++ L
  CCD24166.1 379 EYRELLIKTIRGIAIRFSEMSANVVSLLLDLVSELNSTAASGIISFVKEVMEKypQLRQELLNHLLNSL 447
                 5567889********************************************765799999999998755 PP

>> TAF6_C  TAF6 C-terminal HEAT repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00031      0.61      22      72 ..     413     462 ..     358     474 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00031
      TAF6_C  22 LRdfAAslLakilkkysssyktLkprvtrtllkvlldpkkslgtlyGallg 72 
                 L + AAs + + +k+  ++y++L++++++ ll+ l++  ks++++ Gal  
  CCD24166.1 413 LNSTAASGIISFVKEVMEKYPQLRQELLNHLLNSLVN-IKSAKAYRGALWV 462
                 66789******************************88.999******9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:01.22
# Mc/sec: 2422.08
//
Query:       CCD24167.1  [L=836]
Description: hypothetical protein NDAI_0C05080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1211  (0.0675442); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5596.43
//
Query:       CCD24168.1  [L=488]
Description: hypothetical protein NDAI_0C05090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.021   15.5   5.1      0.038   14.7   5.1    1.3  1  Ino80_Iec3  IEC3 subunit of the Ino80 complex, chromatin re-m
      0.031   14.4   0.8        0.1   12.8   0.1    2.2  2  SRI         SRI (Set2 Rpb1 interacting) domain


Domain annotation for each model (and alignments):
>> Ino80_Iec3  IEC3 subunit of the Ino80 complex, chromatin re-modelling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   5.1   4.2e-06     0.038      80     180 ..     283     383 ..     250     405 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.2e-06
  Ino80_Iec3  80 aaipsleadakgaeaklkeakeelaageitaedlreleeslkkskafapkkslasLlskvphtsleapeslkdlevgedkeeplgylspeeedeyllal 178
                  a+ +++ d +  ++++k ++++ ++++++a+  ++ +++l+  k+ a ++++ + +s+++ +++++++  +  + +++ +e + +++ e+++e++la+
  CCD24168.1 283 PATLNTTVDRDLSKQNIKTVDSQTQRTQTAAQYQAQQQQRLQTDKQQATTSRYGTATSTINLSTTQESRLRHPADGTQQLSERPNFMTQEQIKEHCLAT 381
                 33344556777778*****************888899999999******************998888777777777777889**************986 PP

  Ino80_Iec3 179 Da 180
                  +
  CCD24168.1 382 LK 383
                 44 PP

>> SRI  SRI (Set2 Rpb1 interacting) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.2e-05       0.1      30      56 ..      68      94 ..      54     102 .. 0.87
   2 ?   -2.1   0.1      0.49   4.4e+03      18      29 ..     272     292 ..     264     335 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
         SRI 30 edfKklakeltkklvekElkkdksrdp 56
                +d+K + k+l k++ +kEl+ +ks+d+
  CCD24168.1 68 DDIKLCLKKLNKFVSSKELQFHKSKDE 94
                9*******************9887643 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.49
         SRI  18 nvlnkYrkklk.........k 29 
                 n+l++Y ++ k         +
  CCD24168.1 272 NTLKEYDNPTKpatlnttvdR 292
                 555555555443333333321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2172  (0.121145); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3565.83
//
Query:       CCD24169.1  [L=153]
Description: hypothetical protein NDAI_0C05100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-27   94.2   0.6    4.5e-27   93.6   0.6    1.3  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil
  ------ inclusion threshold ------
       0.21   11.8   0.6        1.5    9.1   0.1    2.1  2  DUF3692         CRISPR-associated protein


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   0.6   5.1e-31   4.5e-27       2      92 ..      39     129 ..      38     132 .. 0.96

  Alignments for each domain:
  == domain 1  score: 93.6 bits;  conditional E-value: 5.1e-31
                     HHHHHHHHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHHHTTEEEEEESCHHHHHHHTTSSSECSEEEEEESTTTH CS
  Ribosomal_L7Ae   2 aieevlkkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrpvsalaikdegdsk 92 
                     ++ +++kka+ka+++++G+kev+kal++g + lv++A d++p++  ++l++lc++++vpy++v+sk++LG +   krp+s+++i+  +++k
      CCD24169.1  39 KVLKTVKKASKAKNVKRGVKEVVKALRKGDKGLVVIAGDISPADVISHLPVLCEDNSVPYIFVPSKQDLGSAGATKRPTSVVFIVPGSNKK 129
                     78899*******************************************************************************9988776 PP

>> DUF3692  CRISPR-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.033     3e+02      71     107 ..      11      49 ..       2      66 .. 0.59
   2 ?    9.1   0.1   0.00017       1.5      70     107 ..     108     148 ..      53     152 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.033
                 GGGSB---SEEEEEEE.TT..THHHHHHHHHHHHHHHHH CS
     DUF3692  71 eletalipnrfvlilpkee..eaeelaeeveealkeawk 107
                 ++++ ++ +r+ ++lp ++  ++++l+++v +++k+a k
  CCD24169.1  11 SKSVDNYDARMPAVLPFAKplASKKLNKKVLKTVKKASK 49 
                 445555555555556544444334666666666655543 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00017
                 GGGGSB---SEEEEEEE.TTTHHHHHHH...HHHHHHHHHH CS
     DUF3692  70 eeletalipnrfvlilpkeeeaeelaee...veealkeawk 107
                  +  +   p ++v+i+p++++++e++ +    ++a++e +k
  CCD24169.1 108 GSAGATKRPTSVVFIVPGSNKKKEAKAKeeeYKDAFNEVVK 148
                 4566666799*******998555333331135555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1399  (0.07803); expected 358.6 (0.02)
Passed bias filter:                      692  (0.0385967); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1106.80
//
Query:       CCD24170.1  [L=561]
Description: hypothetical protein NDAI_0C05110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-89  301.2   0.0    1.6e-89  301.0   0.0    1.1  1  Amidase   Amidase
  ------ inclusion threshold ------
      0.067   13.2   0.4       0.16   12.0   0.4    1.6  1  DUF1160   Protein of unknown function (DUF1160)


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.0   0.0   1.8e-93   1.6e-89       5     451 .]      81     548 ..      77     548 .. 0.85

  Alignments for each domain:
  == domain 1  score: 301.0 bits;  conditional E-value: 1.8e-93
                 HHHHHHHHHHHHH--EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS..--HHHHHHHHTT-EEEEEE-- CS
     Amidase   5 aflkrieavneklnalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaek..DatvverLkkaGavilgkTnm 101
                 af++r++ +++ ln+l ++++++al+ A++ld + ++ +e +pL+G+Pis+KD+++v gv+tt+G+ +++ +p+e   ++ +v++L++ Gav + kT++
  CCD24170.1  81 AFCHRAALIHQVLNCLSEIMFQNALEYAKNLDINKSKISELPPLYGIPISLKDQCNVVGVDTTLGYVSRAMKPKELndESLIVTLLESLGAVTYAKTTV 179
                 8*********************************************************************9999855599******************* PP

                 SGGG-SSSSTT-TT---BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB-....-SSTTT-EEEEEESS CS
     Amidase 102 defamgsstensvfgptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvv....alessldvvGplars 196
                 + ++m ++t++++fg t N ++++ + GGSSGG++A++++ +++l++GtD+GGSiRiP+s+ gl+GlKP++g +++ +v     ++e + +v+Gpla++
  CCD24170.1 180 PPSMMATETNSNLFGYTLNGLNQNFSTGGSSGGEGALISCSGSLLGLGTDIGGSIRIPSSYHGLFGLKPSTGKIPYLKVDnsfeGREIIPSVIGPLAKD 278
                 *************************************************************************************************** PP

                 HHHHHHHHHHHBS--TT-TTS----...HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCT...T..-EEEEEE-CCGGG.HHH CS
     Amidase 197 vedlalllrvilgedpkdstssvip...eesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeea...G..hevvevelpslee.als 286
                 ++dl+++l+vi+++++ +  + ++       ++  e +k++ k++ +G++  dgv++l+p+  ra++ +++   +a   G  ++  e+++p   +  l+
  CCD24170.1 279 LDDLRYFLEVIVNHCKPWKYDVNCSpyeFSHYKDYELRKEKGKPFIVGIWYGDGVITLPPSDLRALKYCKEVIDQAliaGehIRTMEWDPPVELNkELH 377
                 ************998776666665456544566778888888***********************9988876665422232456666776654330223 PP

                 .HHHHHHHHHHHHHTTT-SSSSS---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCC..HHHHHHHHHHHHHHHHHHCCC...BSEEEE CS
     Amidase 287 .lyylilvaeassnlarylgvryerlsetkvlsellpksraellgeevkrrielgnyalsaeassky..ylkaqkvrrllrrefakafee...lDvlls 379
                  l +++  a+a+                  + + l ++++ e+  +++k ++e  n  + + +  ++  + + + + ++  re+ + + e    Dv+++
  CCD24170.1 378 dLAMEADIADAG------------------NEISLEFSKSGEPTIDILKPMVEITNSHTYSVN--QWwdLSRRCYITKQKFREYYNSLAEdqrPDVIIA 456
                 244444455554..................34689999******************8888885..33223333333335555555555558******** PP

                 ESSSSS--BCCCCCHHHCSHHHHHGCCTTT...HHHHHTT--EEE...EECCCC.T..................TECEEEEEEESTT-HHHHH CS
     Amidase 380 Ptaptpaprlgekdktidsytvlynlldftavvvpvnlaglpals...vpagks.ed.................glPvGvqvigkafqeetlL 451
                 P ++ +a+r g++ kt  +y+   n+l+f++ ++pv  ++l  ++   v+ + + ed                 ++P+G+q+i++ fq+  ++
  CCD24170.1 457 P-TTLTAFRPGDMMKTSLRYILFVNVLNFPSLSIPVGNVDLMKDQkmdVTTALNpEDemviqywnslvdsgeveNFPIGLQIISPIFQDDNVC 548
                 *.556799999999999**********************9988876555555553449*******************************9886 PP

>> DUF1160  Protein of unknown function (DUF1160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.4   1.8e-05      0.16      24      99 ..      29     105 ..      25     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
     DUF1160  24 kylkelerdetfrkklvkvlkmFiereievediyeiveavdgikLtkkQidy.lvkqvyenekiisilqkfvdeqrL 99 
                 k+l+ l+ d+t  +k   ++   +e+ei+  +i ++ e + +  Lt  Q+ y ++++    +++++ l + + ++ L
  CCD24170.1  29 KILNRLKADKTSLSKNLDLVCPELENEITHSTILKLKEKISSNTLTCYQVSYaFCHRAALIHQVLNCLSEIMFQNAL 105
                 67899999999999999999999******************99*********8889999999999988876666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3999.37
//
Query:       CCD24171.1  [L=628]
Description: hypothetical protein NDAI_0C05120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-45  153.4   1.7    3.6e-44  150.6   0.1    2.7  3  DEAD        DEAD/DEAH box helicase
    1.3e-30  106.0   1.6    1.1e-28   99.8   0.3    3.3  3  Helicase_C  Helicase conserved C-terminal domain
    1.7e-09   37.9   0.2    4.5e-08   33.3   0.0    2.5  2  ResIII      Type III restriction enzyme, res subunit
     0.0072   16.3   0.2      0.026   14.5   0.0    2.1  2  DUF3788     Protein of unknown function (DUF3788)
  ------ inclusion threshold ------
      0.026   14.8   2.7      0.069   13.4   0.1    2.8  3  AAA_22      AAA domain
      0.067   13.4   0.6        0.4   10.9   0.1    2.6  2  CdiA_C      Contact-dependent growth inhibition CdiA C-termin


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.42   1.3e+03      42      90 ..      32      83 ..      21      96 .. 0.69
   2 !  150.6   0.1   1.2e-47   3.6e-44       1     175 [.     230     416 ..     230     417 .. 0.93
   3 ?    0.5   0.0      0.16   4.6e+02      68     105 ..     493     535 ..     438     555 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.42
                S...TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEE.EEETTSSHHHH CS
                x...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
        DEAD 42 t...kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvl.liiggvaardq 90
                +   +g+++pk l  e    L++++ +n k++    dl+++  ii+++a+ ++
  CCD24171.1 32 NtasNGDEKPKFLSKEERYRLIQDMESNNKRSSIDPDLELVnEIISSTAT-RN 83
                34557888899999999999999999999988888788777444554444.33 PP

  == domain 2  score: 150.6 bits;  conditional E-value: 1.2e-47
                 -HHHHHHHHHHH..TTCEEEEEESTTSSHHHHHHHHHHHHHHHS.......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTST....SEEEEEETTSS CS
                 xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplil..gggdvlvaaeTGsGKTlaflipvlqivyet.......kgktgpkalivePtreLaeqtlnnlkkfkkyid....lrvlliiggva 86 
                 t+iQ+ +ip+il  +++d+++ a TGsGKTlaf++p+l +++et       k+ +gp+ li++PtreLa+q+ +++ k++++++     ++++i+gg +
  CCD24171.1 230 TPIQRITIPNILlqNDRDFIGVASTGSGKTLAFILPILIKLLETgdkpinlKKIDGPMSLILVPTRELAQQIQSEADKIISFLRpsynFNTCSIVGGYS 328
                 89**********98889****************************************************************765566699********* PP

                 HHHHHHHHHTT.CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  87 ardqlskldng.vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                  ++  ++l+++ +d++++tpg+l++ l+++ l++++++flVlDEad++ d gf+d++++ilnq++  +  +  + ++++++AT+++ ++k
  CCD24171.1 329 LEEISRNLNEKaCDLLIATPGKLIECLENHILTIQKISFLVLDEADKMIDLGFEDQLKSILNQIKIENVLT--NYKILMFTATMSTPIEK 416
                 ********7557****************9***********************************6444444..466********998887 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.16
                 HHHTTT.STSEEEEEET...TSSHHHHHHHHH.TTCSEEEEEH CS
                 xxxxxx.xxxxxxxxxx...xxxxxxxxxxxx.xxxxxxxxxx RF
        DEAD  68 kkfkky.idlrvlliig...gvaardqlskld.ngvdivvgtp 105
                 +++ +     ++ ++ g   ++++++ l+ l+ ++v+i+++t 
  CCD24171.1 493 TSYSSSrSAFKCTVLHGsksQEQREHSLQLLRsHRVQILIATN 535
                 33333312244444444222344444445555355***99996 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.042   1.2e+02      15      73 ..     284     347 ..     265     349 .. 0.71
   2 ?   -0.7   0.1      0.58   1.7e+03       7      35 ..     389     422 ..     382     446 .. 0.59
   3 !   99.8   0.3   3.7e-32   1.1e-28       3     111 .]     456     572 ..     454     572 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.042
                 TTSEEEEEESSHH.......HHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  15 eggkilifvntid.......rlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiat 73 
                 +g  +li v+t++       +++k +++l+ + +++++ + g  +    eei ++ n++ +d+Liat
  CCD24171.1 284 DGPMSLILVPTRElaqqiqsEADKiISFLRPSYNFNTCSIVGGYSL---EEISRNLNEKACDLLIAT 347
                 4556799999999655443333435666655559999999997665...557788888899999998 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.58
                 HHHH..HHTTTTSEEEEEESSHH.HHHH..HHHH CS
  Helicase_C   7 lell..kleeeggkilifvntid.rlek..vkll 35 
                 l+ +  ++   ++kil+f+ t +  +ek    +l
  CCD24171.1 389 LNQIkiENVLTNYKILMFTATMStPIEKiaRGYL 422
                 4443446777888888888887754443333344 PP

  == domain 3  score: 99.8 bits;  conditional E-value: 3.7e-32
                 HHHHHHHHHHTTTTSEEEEEESSHHHHHH.........HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESS CS
  Helicase_C   3 leallellkleeeggkilifvntidrlek.........vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfd 92 
                 +++++ ll +++ ++ ++if+n++++++          +++  +++++k++vlhg+ +q++re++l+  +++++++Liat+va+rG+dip+v++V+nf+
  CCD24171.1 456 YQKIVSLL-KSHPNELVIIFINYKSTADWlankfqnerTSYSSSRSAFKCTVLHGSKSQEQREHSLQLLRSHRVQILIATNVAARGLDIPNVTTVFNFQ 553
                 67888999.89**************8865632333333444455559**************************************************** PP

                 SSSSHHHHHHHHTTSSSTT CS
  Helicase_C  93 lprnvtsyiqriGRtgRag 111
                 + ++ ++y++riGRtgRag
  CCD24171.1 554 MSKTFEDYVHRIGRTGRAG 572
                 *****************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.5e-11   4.5e-08       7     169 ..     232     410 ..     216     412 .. 0.79
   2 ?    1.7   0.1     0.075   2.2e+02      45      97 ..     459     521 ..     455     542 .. 0.72

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.5e-11
                 HHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S..............-EEEEESSHHHHHHHH...HHGGGGTGG.....GEEEESS CS
      ResIII   7 yQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee.........kflflvprkslleqtl...eefkkflseayke.igkkvsg 91 
                  Q   i n+l  l  ++d+ ++ ++ TG+GKTl   + +  +ll+ g++            l+lvp+++l +q +   +++ +fl + y++ ++ +v g
  CCD24171.1 232 IQRITIPNIL--L--QNDRDFIGVASTGSGKTLAFiLPILIKLLETGDKPinlkkidgpMSLILVPTRELAQQIQseaDKIISFLRPSYNFnTCSIVGG 326
                 4555555554..3..5788999999********996777777777777669*******99***************655556666666776688888888 PP

                 S-B--.........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....T......TTHHHHHT---SEEEEEESS- CS
      ResIII  92 dkkka..kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...k......swreilekfkeavllglTATp 169
                  + ++  ++ +++ +++l++t  +l + +     e++ l  +++ +++ DEa ++ +    +      +  +i + + ++++l +TAT+
  CCD24171.1 327 YSLEEisRNLNEKACDLLIATPGKLIECL-----ENHILTIQKISFLVLDEADKMIDLgfeDqlksilNQIKIENVLTNYKILMFTATM 410
                 8888887788999****************.....999999****************9866632333333333355557799*******7 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.075
                 HHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--....... CS
      ResIII  45 ierllkkgkeekflflvprkslleqtleefkkflseayke....igkkvsgdkkka......k 97 
                 i +llk++++e ++++++ ks  + + ++f++   ++ ++    ++++++g k ++      +
  CCD24171.1 459 IVSLLKSHPNELVIIFINYKSTADWLANKFQNERTSYSSSrsafKCTVLHGSKSQEqrehslQ 521
                 557888899999999999999888888888777777766666678888888887773333333 PP

>> DUF3788  Protein of unknown function (DUF3788)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.1   9.4e+03      83     117 ..     377     415 ..     370     418 .. 0.56
   2 !   14.5   0.0   8.7e-06     0.026       2      87 ..     438     524 ..     437     543 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.1
     DUF3788  83 les.lseevkklideaktyg...dgkwlmlevtseevle 117
                 +++ +++++k ++++ k  +   + k lm++ t  + +e
  CCD24171.1 377 IDLgFEDQLKSILNQIKIENvltNYKILMFTATMSTPIE 415
                 455555555555555444444447777777776666555 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 8.7e-06
     DUF3788   2 kkPteeelaevlgkeyelwdkllelleetyeepelewsyygkkkgWnvkykkkkktlctlypeegyFkvlivlgek...kfeallesls 87 
                  +P+  ++ e++ +e ++++k+ +ll++  +e  + +  y++   W+    + ++t    +  + +Fk+++  g k   ++e  l++l 
  CCD24171.1 438 SIPQIRQIIEYCPSEEQRYQKIVSLLKSHPNELVIIFINYKSTADWLANKFQNERT--SYSSSRSAFKCTVLHGSKsqeQREHSLQLLR 524
                 58*************************9977****************988887887..5678899999999999997777777777643 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.5   4.6e+03      12      20 ..     252     260 ..     251     262 .. 0.81
   2 ?   13.4   0.1   2.3e-05     0.069      55     124 ..     331     395 ..     292     404 .. 0.71
   3 ?   -0.2   0.0      0.37   1.1e+03      56      96 ..     480     532 ..     437     547 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.5
      AAA_22  12 GesGtGKTt 20 
                 + +G+GKT+
  CCD24171.1 252 ASTGSGKTL 260
                 579*****8 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 2.3e-05
      AAA_22  55 dllrellralglelkaerlsseellealeqalraravielliiDEaqhlrseealeeLrsllnlsrkgvq 124
                 ++ r+l ++  + l    ++   l+e le+++ + ++i++l++DEa++++      +L+s+ln  + ++ 
  CCD24171.1 331 EISRNLNEKACDLLI---ATPGKLIECLENHILTIQKISFLVLDEADKMIDLGFEDQLKSILN--QIKIE 395
                 333333333333333...48888999999******99***********867888888888888..76665 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.37
      AAA_22  56 llrellralglelka.............erlsseellealeqalraravielli 96 
                  + +l++++++e+ +              + +s+e +e+  q lr+++v ++li
  CCD24171.1 480 TADWLANKFQNERTSysssrsafkctvlHGSKSQEQREHSLQLLRSHRV-QILI 532
                 4455666666555556666777777777666777777777777777777.6666 PP

>> CdiA_C  Contact-dependent growth inhibition CdiA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00013       0.4       6      61 ..     393     449 ..     392     467 .. 0.79
   2 ?   -1.8   0.0       1.3   3.8e+03      13      33 ..     592     615 ..     588     622 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00013
      CdiA_C   6 linGevfDvKspt.sgngkniisnilkkakkQaknivlnlrdsdlsieeikegiera 61 
                 +i++++  +K +  ++  ++ i++i +   +Q  n ++n+++s+ si +i ++ie +
  CCD24171.1 393 KIENVLTNYKILMfTATMSTPIEKIARGYLNQPINAIINADGSKSSIPQIRQIIEYC 449
                 6777777777777767777889999999999************************97 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.3
      CdiA_C  13 DvKspt.sgn..gkniisnilkka 33 
                 +++s + + n  ++ni++ +lkk+
  CCD24171.1 592 ELYSYQrEHNplNNNIFQDVLKKK 615
                 677777634422459999999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4219.51
//
Query:       CCD24172.1  [L=590]
Description: hypothetical protein NDAI_0C05130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-18   64.3   6.0    5.4e-07   29.2   0.1    5.4  5  TPR_11      TPR repeat
      1e-17   63.1  10.3      8e-07   28.6   0.1    5.1  5  TPR_1       Tetratricopeptide repeat
    1.2e-17   62.5   8.0    7.3e-05   22.6   0.0    5.8  6  TPR_2       Tetratricopeptide repeat
    1.9e-13   50.0   0.1     0.0019   18.9   0.0    4.9  5  TPR_14      Tetratricopeptide repeat
    4.4e-13   48.6  14.5    0.00095   19.4   0.1    5.8  5  TPR_17      Tetratricopeptide repeat
    6.3e-11   41.6  10.1     0.0025   17.9   0.1    5.6  6  TPR_8       Tetratricopeptide repeat
      3e-10   40.6   0.0    0.00084   19.9   0.1    3.3  3  TPR_16      Tetratricopeptide repeat
    1.8e-09   37.6   0.0     0.0019   18.3   0.0    3.4  3  TPR_9       Tetratricopeptide repeat
    8.2e-09   35.7   1.5     0.0018   18.6   0.0    4.6  5  TPR_20      Tetratricopeptide repeat
    2.1e-07   31.3   5.1      0.018   15.6   0.0    4.5  4  TPR_19      Tetratricopeptide repeat
    1.7e-06   28.3   0.3        3.2    8.6   0.0    5.2  4  TPR_6       Tetratricopeptide repeat
    3.3e-05   24.1   2.0      0.046   14.0   0.9    3.5  3  TPR_12      Tetratricopeptide repeat
    4.3e-05   23.7   5.3      0.026   14.7   0.1    3.4  3  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
     0.0067   15.7   0.9      0.026   13.8   0.0    2.1  2  TPR_15      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.2   0.1       0.22   11.9   0.0    2.3  2  BTAD        Bacterial transcriptional activator domain
      0.018   15.0   0.0         17    5.7   0.0    3.7  3  TPR_7       Tetratricopeptide repeat
      0.043   13.9   0.1         20    5.3   0.0    3.1  3  MIT         MIT (microtubule interacting and transport) domai
       0.18   11.9   1.3          4    7.6   0.0    3.1  2  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
        0.6   10.1   6.6          7    6.7   0.2    3.8  4  TPR_10      Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00061      0.57       9      40 ..     312     343 ..     305     344 .. 0.90
   2 ?    3.8   0.1     0.049        46      14      38 ..     351     375 ..     351     379 .. 0.84
   3 ?    4.5   0.1     0.029        28      24      41 ..     437     454 ..     434     455 .. 0.88
   4 !   18.6   0.0   1.2e-06    0.0011       1      39 [.     448     486 ..     448     489 .. 0.91
   5 !   29.2   0.1   5.8e-10   5.4e-07       8      39 ..     489     520 ..     487     523 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00061
      TPR_11   9 kyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 k+ +A  a+++A+k d + + a+++LGl++ +
  CCD24172.1 312 KLSDAAMAFEAAIKQDMNHVQAWLKLGLVQIQ 343
                 677888999*******************9865 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.049
      TPR_11  14 ieaYkkAlkldPdnaeayynLGlay 38 
                 i+a++  ++ldP+n  a  nL+  y
  CCD24172.1 351 IAALESCINLDPNNLLAMENLAISY 375
                 66777789*********99999888 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.029
      TPR_11  24 dPdnaeayynLGlayykq 41 
                 + ++ae+ ++LGl++y +
  CCD24172.1 437 NANDAEFQLCLGLLHYSN 454
                 789*************76 PP

  == domain 4  score: 18.6 bits;  conditional E-value: 1.2e-06
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 G + y+  ++++ +e++++Alk++P++   ++ LG+ ++
  CCD24172.1 448 GLLHYSNDDFDKTLECFQNALKINPNDELMWNRLGASLA 486
                 67789999***************************9775 PP

  == domain 5  score: 29.2 bits;  conditional E-value: 5.8e-10
      TPR_11   8 GkyeeAieaYkkAlkldPdnaeayynLGlayy 39 
                 ++ eeAi+aY kA++l+P++++a ynL++a +
  CCD24172.1 489 NRSEEAIKAYHKAINLKPSFVRARYNLAVASM 520
                 5669************************9865 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       6.6   6.2e+03      18      31 ..     314     327 ..     312     327 .. 0.75
   2 ?    4.7   0.0     0.032        30       2      34 .]     332     364 ..     331     364 .. 0.94
   3 !   28.6   0.1   8.5e-10     8e-07       5      34 .]     445     474 ..     441     474 .. 0.92
   4 !   25.2   0.0     1e-08   9.7e-06       4      34 .]     478     508 ..     476     508 .. 0.96
   5 !    8.2   0.0    0.0025       2.3       2      29 ..     510     537 ..     509     540 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.6
                 HHHHHHHHHHHHHS CS
       TPR_1  18 deAleyyekALeln 31 
                  +A  ++e A++ +
  CCD24172.1 314 SDAAMAFEAAIKQD 327
                 67888999999865 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.032
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 +a+  lG++  +++k    +++ e ++ l+Pnn
  CCD24172.1 332 QAWLKLGLVQIQNEKELNGIAALESCINLDPNN 364
                 79******************************8 PP

  == domain 3  score: 28.6 bits;  conditional E-value: 8.5e-10
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnPnn 34 
                   lG++++++ ++d+ le+++ AL++nPn+
  CCD24172.1 445 LCLGLLHYSNDDFDKTLECFQNALKINPND 474
                 579*************************97 PP

  == domain 4  score: 25.2 bits;  conditional E-value: 1e-08
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPnn 34 
                 +++lG+ + + ++ +eA+++y kA+ l P++
  CCD24172.1 478 WNRLGASLANSNRSEEAIKAYHKAINLKPSF 508
                 9****************************86 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0025
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALe 29 
                 +a ynl++a ++ g y+eA  +   +L+
  CCD24172.1 510 RARYNLAVASMNIGCYQEAAGHLLTVLK 537
                 799****************877766665 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.21     2e+02       5      34 .]     300     330 ..     298     330 .. 0.89
   2 ?    4.7   0.0     0.041        39       2      34 .]     332     364 ..     331     364 .. 0.94
   3 ?   -2.5   0.0       8.1   7.6e+03       3      15 ..     367     379 ..     366     384 .. 0.81
   4 !   21.8   0.0   1.4e-07   0.00013       1      34 []     441     474 ..     441     474 .. 0.94
   5 !   22.6   0.0   7.7e-08   7.3e-05       4      33 ..     478     507 ..     476     508 .. 0.96
   6 !   10.9   0.0   0.00042       0.4       2      29 ..     510     537 ..     509     539 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.21
       TPR_2   5 ynlGlayyklgdy.eeAleafekAleldPnn 34 
                 y++G++++++g    +A+ afe+A++ d n+
  CCD24172.1 300 YEIGCILMENGAKlSDAAMAFEAAIKQDMNH 330
                 7899999999999999999*******99876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.041
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +a+  lGl+ +++ +    ++a+e ++ ldPnn
  CCD24172.1 332 QAWLKLGLVQIQNEKELNGIAALESCINLDPNN 364
                 69999***************************8 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 8.1
       TPR_2   3 alynlGlayyklg 15 
                 a  nl+ +y++ g
  CCD24172.1 367 AMENLAISYINEG 379
                 5679999999887 PP

  == domain 4  score: 21.8 bits;  conditional E-value: 1.4e-07
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 ae   +lGl++y ++d+++ le+f+ Al+++Pn+
  CCD24172.1 441 AEFQLCLGLLHYSNDDFDKTLECFQNALKINPND 474
                 677889**************************97 PP

  == domain 5  score: 22.6 bits;  conditional E-value: 7.7e-08
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPn 33 
                 +++lG +++++++ eeA++a+ kA+ l P 
  CCD24172.1 478 WNRLGASLANSNRSEEAIKAYHKAINLKPS 507
                 9**************************996 PP

  == domain 6  score: 10.9 bits;  conditional E-value: 0.00042
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 +a ynl+ a ++ g y+eA+ ++  +l+
  CCD24172.1 510 RARYNLAVASMNIGCYQEAAGHLLTVLK 537
                 578*******************999987 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1    0.0011         1      12      42 ..     308     338 ..     304     342 .. 0.86
   2 ?    6.5   0.0     0.019        18       2      42 ..     332     372 ..     331     374 .. 0.94
   3 ?    1.5   0.0      0.76   7.2e+02       7      35 ..     371     400 ..     370     402 .. 0.86
   4 !   18.9   0.0     2e-06    0.0019       2      42 ..     442     482 ..     441     484 .. 0.94
   5 !   15.5   0.0   2.4e-05     0.022       4      43 ..     478     517 ..     477     518 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0011
      TPR_14  12 lalGdpdeAiallrralalaPddaeawllla 42 
                 ++  ++ +A+ ++++a++++ ++ +awl l+
  CCD24172.1 308 ENGAKLSDAAMAFEAAIKQDMNHVQAWLKLG 338
                 4555899********************9987 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.019
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 +a+l+l+ +  ++++    ia+l+ ++ l+P+++ a   la
  CCD24172.1 332 QAWLKLGLVQIQNEKELNGIAALESCINLDPNNLLAMENLA 372
                 79*********************************999887 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.76
      TPR_14   7 laeallalGdpdeAiallrrala.laPdda 35 
                 la  + + G    A ++l+++l+ ++P++a
  CCD24172.1 371 LAISYINEGYDISAYNMLNKWLDiKYPENA 400
                 6888999999999**********6699987 PP

  == domain 4  score: 18.9 bits;  conditional E-value: 2e-06
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 e +l+l+ +++ ++d+d+ +++++ al+ +P+d+  w +l+
  CCD24172.1 442 EFQLCLGLLHYSNDDFDKTLECFQNALKINPNDELMWNRLG 482
                 6799*********************************9997 PP

  == domain 5  score: 15.5 bits;  conditional E-value: 2.4e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 + +l++ l+++ + +eAi+++++a+ l P++ +a++ la 
  CCD24172.1 478 WNRLGASLANSNRSEEAIKAYHKAINLKPSFVRARYNLAV 517
                 77899********************************995 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0017       1.6       2      26 ..     320     344 ..     319     349 .. 0.88
   2 !    9.8   0.3    0.0012       1.1       3      25 ..     355     377 ..     353     383 .. 0.88
   3 ?    3.4   0.3      0.13   1.2e+02       6      31 ..     434     459 ..     434     462 .. 0.90
   4 !   19.4   0.1     1e-06   0.00095       1      34 []     463     496 ..     463     496 .. 0.97
   5 !   12.8   0.1   0.00013      0.12       2      32 ..     498     528 ..     497     529 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0017
      TPR_17   2 ylkaleldPnnadaynnLAelllkn 26 
                 ++ a+++d n++ a+  L+ ++ +n
  CCD24172.1 320 FEAAIKQDMNHVQAWLKLGLVQIQN 344
                 89*****************987665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0012
      TPR_17   3 lkaleldPnnadaynnLAelllk 25 
                 + ++ ldPnn  a+ nLA  + +
  CCD24172.1 355 ESCINLDPNNLLAMENLAISYIN 377
                 679***************99876 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.13
      TPR_17   6 leldPnnadaynnLAelllknGdlmt 31 
                 + ++ n+a++   L+ l+++n d+++
  CCD24172.1 434 INNNANDAEFQLCLGLLHYSNDDFDK 459
                 67899****************99875 PP

  == domain 4  score: 19.4 bits;  conditional E-value: 1e-06
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 ++++al+++Pn+   +n L+  l++ +++++A++
  CCD24172.1 463 CFQNALKINPNDELMWNRLGASLANSNRSEEAIK 496
                 89******************************85 PP

  == domain 5  score: 12.8 bits;  conditional E-value: 0.00013
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 y ka+ l P+ + a +nLA++  ++G +++A
  CCD24172.1 498 YHKAINLKPSFVRARYNLAVASMNIGCYQEA 528
                 559*************************998 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1         3   2.8e+03       5      29 ..     300     325 ..     299     328 .. 0.64
   2 !   14.1   0.0   4.2e-05      0.04       2      34 .]     332     364 ..     331     364 .. 0.96
   3 ?   -2.0   0.1       6.2   5.9e+03       6      23 ..     370     387 ..     367     395 .. 0.59
   4 !   10.6   0.0   0.00058      0.54       7      34 .]     447     474 ..     441     474 .. 0.94
   5 !   17.9   0.1   2.7e-06    0.0025       3      33 ..     477     507 ..     476     508 .. 0.96
   6 ?    0.6   0.0      0.91   8.6e+02       2      20 ..     510     528 ..     509     538 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3
                 HHHHHHH.HHTT-HHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiy.lklgdyeeAkeyyekale 29 
                 y +g+i+ ++  ++  A  ++e a++
  CCD24172.1 300 YEIGCILmENGAKLSDAAMAFEAAIK 325
                 67888884444456666667777776 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4.2e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +a+++lg++ ++ ++  + ++++e ++ ldp+n
  CCD24172.1 332 QAWLKLGLVQIQNEKELNGIAALESCINLDPNN 364
                 89*****************************97 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 6.2
                 HHHHHHHHTT-HHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkey 23 
                 nl+  y++ g   +A   
  CCD24172.1 370 NLAISYINEGYDISAYNM 387
                 556666666665555555 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00058
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpdn 34 
                 lg+++ +  d+++  e+++ al+++p++
  CCD24172.1 447 LGLLHYSNDDFDKTLECFQNALKINPND 474
                 899***********************96 PP

  == domain 5  score: 17.9 bits;  conditional E-value: 2.7e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++++lg  + + ++ eeA+++y ka+ l+p+
  CCD24172.1 477 MWNRLGASLANSNRSEEAIKAYHKAINLKPS 507
                 69***************************96 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.91
                 CHHHHHHHHHHHTT-HHHH CS
       TPR_8   2 eayynlgsiylklgdyeeA 20 
                 +a ynl+ + ++ g y+eA
  CCD24172.1 510 RARYNLAVASMNIGCYQEA 528
                 899********99999998 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00011       0.1       4      56 ..     303     353 ..     300     364 .. 0.79
   2 !   11.9   0.0   0.00029      0.28       3      54 ..     447     495 ..     447     495 .. 0.92
   3 !   19.9   0.1   8.9e-07   0.00084       3      59 ..     481     534 ..     479     540 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00011
      TPR_16   4 araalragd.yddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaal 56 
                 + +++++g    dAa a+eaa+k+d     +++A+l lg++  ++      +a+
  CCD24172.1 303 GCILMENGAkLSDAAMAFEAAIKQD---MNHVQAWLKLGLVQIQNEKELNGIAA 353
                 566666666699*************...************99887666655555 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00029
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAa 54 
                 l+++++ + d+d+ ++ ++ alk +   P +  +++ lg +++  +r +eA+
  CCD24172.1 447 LGLLHYSNDDFDKTLECFQNALKIN---PNDELMWNRLGASLANSNRSEEAI 495
                 68899999*****************...77777****************997 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 8.9e-07
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                 l+ +++++++ ++A++a++ a+ +    P  ++A+++l++a    g ++eAa  ++ 
  CCD24172.1 481 LGASLANSNRSEEAIKAYHKAINLK---PSFVRARYNLAVASMNIGCYQEAAGHLLT 534
                 78899********************...***********************966655 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0039       3.7      18      61 ..     320     363 ..     308     370 .. 0.86
   2 !    7.4   0.0    0.0051       4.8       4      28 ..     450     474 ..     447     482 .. 0.84
   3 !   18.3   0.0     2e-06    0.0019       3      56 ..     483     536 ..     481     553 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0039
       TPR_9  18 verllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                  e  +  + ++++ ++  Gl++ q +    ++a+Le ++ l+p+
  CCD24172.1 320 FEAAIKQDMNHVQAWLKLGLVQIQNEKELNGIAALESCINLDPN 363
                 56666667899******************************996 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0051
       TPR_9   4 iaireedweralavverllllaPdd 28 
                 ++ +++d++++l++ +  l ++P+d
  CCD24172.1 450 LHYSNDDFDKTLECFQNALKINPND 474
                 6889999999999999999999998 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 2e-06
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeayl 56 
                 a +++++++e+a++++   + l+P  ++ r+  +++ +  Gc+++A+  L + l
  CCD24172.1 483 ASLANSNRSEEAIKAYHKAINLKPSFVRARYNLAVASMNIGCYQEAAGHLLTVL 536
                 67899******************************************9987766 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.087        82       9      42 ..     318     351 ..     311     354 .. 0.84
   2 !    7.3   0.0    0.0061       5.7       6      51 ..     349     394 ..     344     406 .. 0.87
   3 ?    1.9   0.0       0.3   2.8e+02      14      54 ..     433     473 ..     432     477 .. 0.88
   4 ?    2.9   0.0      0.15   1.4e+02       7      44 ..     460     497 ..     458     502 .. 0.89
   5 !   18.6   0.0   1.9e-06    0.0018       5      55 ..     492     542 ..     488     553 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.087
      TPR_20   9 aeleaalaanpddldarldlAlallaagryeeAl 42 
                  ++eaa++++ + ++a l+l l++++++++   +
  CCD24172.1 318 MAFEAAIKQDMNHVQAWLKLGLVQIQNEKELNGI 351
                 5799**********************99876655 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0061
      TPR_20   6 pelaeleaalaanpddldarldlAlallaagryeeAleqLleilkr 51 
                   +a+le+ ++ +p++l a+ +lA  ++ +g    A + L ++l  
  CCD24172.1 349 NGIAALESCINLDPNNLLAMENLAISYINEGYDISAYNMLNKWLDI 394
                 56899********************************999888765 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.3
      TPR_20  14 alaanpddldarldlAlallaagryeeAleqLleilkrdrk 54 
                 ++++n +d + +l l l+ +++ + ++ le + + lk + +
  CCD24172.1 433 QINNNANDAEFQLCLGLLHYSNDDFDKTLECFQNALKINPN 473
                 68999*******************99999999888888766 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.15
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeAleq 44 
                 +l+ +++al+ np+d      l   l+  +r eeA+++
  CCD24172.1 460 TLECFQNALKINPNDELMWNRLGASLANSNRSEEAIKA 497
                 5677899********999999**************975 PP

  == domain 5  score: 18.6 bits;  conditional E-value: 1.9e-06
      TPR_20   5 apelaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkw 55 
                 ++ +++  +a++ +p+ + ar++lA a +  g y+eA+ +Ll++lk ++  
  CCD24172.1 492 EEAIKAYHKAINLKPSFVRARYNLAVASMNIGCYQEAAGHLLTVLKMHQVH 542
                 6778999999***********************************988655 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.3     0.027        26       2      37 ..     307     343 ..     306     348 .. 0.80
   2 ?    3.9   0.1     0.082        77      11      54 ..     351     394 ..     349     402 .. 0.84
   3 !   10.5   0.0   0.00072      0.68       4      45 ..     454     495 ..     451     496 .. 0.93
   4 !   15.6   0.0   1.9e-05     0.018       6      56 ..     490     540 ..     485     545 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.027
      TPR_19   2 laeg.dyaeAlalleqalqedpknaearllLAealla 37 
                 +++g ++ +A+ ++e+a+++d ++  a+l L  ++++
  CCD24172.1 307 MENGaKLSDAAMAFEAAIKQDMNHVQAWLKLGLVQIQ 343
                 566667899***********99988888877777776 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.082
      TPR_19  11 lalleqalqedpknaearllLAeallalgqldeAealLdalpee 54 
                 +a+le+ +  dp+n+ a  +LA+ +++ g    A ++L++ ++ 
  CCD24172.1 351 IAALESCINLDPNNLLAMENLAISYINEGYDISAYNMLNKWLDI 394
                 6789999999*****************99887777777776665 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00072
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 + d++  l+ +++al+ +p+++  + +L   l ++++ +eA+
  CCD24172.1 454 NDDFDKTLECFQNALKINPNDELMWNRLGASLANSNRSEEAI 495
                 6799999**********************************8 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 1.9e-05
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56 
                 + +eA++++ +a+  +p   +ar++LA a ++ g ++eA   L +++++ +
  CCD24172.1 490 RSEEAIKAYHKAINLKPSFVRARYNLAVASMNIGCYQEAAGHLLTVLKMHQ 540
                 6789************************************99999998876 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.72   6.8e+02       4      29 ..     300     326 ..     299     327 .. 0.77
   2 ?    6.8   0.0     0.012        12       1      32 [.     332     363 ..     332     364 .. 0.87
   3 !    8.6   0.0    0.0034       3.2       6      32 ..     447     473 ..     447     474 .. 0.95
   4 ?    4.4   0.0     0.075        71       5      28 ..     480     503 ..     480     506 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.72
                 HHHHHHHHH.HHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrk.lgdtdkAlealerlike 29 
                 y ++  + + + + ++A  a+e  ik+
  CCD24172.1 300 YEIGCILMEnGAKLSDAAMAFEAAIKQ 326
                 67776666635599********99986 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHHHHHH.HHHHHHHHHHHH-TT CS
       TPR_6   1 dAlyklalsyrklgdtd.kAlealerlikeYPd 32 
                 +A +kl+l +++  +++ + ++ale++i+  P+
  CCD24172.1 332 QAWLKLGLVQIQN-EKElNGIAALESCINLDPN 363
                 699********86.5555************999 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYPd 32 
                 l+l++++ +d dk le +++ +k  P+
  CCD24172.1 447 LGLLHYSNDDFDKTLECFQNALKINPN 473
                 799****99****************98 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.075
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +l+ s+ + +++++A++a+ + i+
  CCD24172.1 480 RLGASLANSNRSEEAIKAYHKAIN 503
                 6788889867**********9997 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.011        11       7      32 ..     445     470 ..     440     476 .. 0.89
   2 !   14.0   0.9   4.8e-05     0.046       5      61 ..     477     532 ..     473     541 .. 0.88
   3 ?    5.3   0.1     0.025        24       5      41 ..     511     546 ..     507     551 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.011
      TPR_12   7 nnlaavlrrlgrydeAlellekalei 32 
                   l+++++   ++d+ le+++ al i
  CCD24172.1 445 LCLGLLHYSNDDFDKTLECFQNALKI 470
                 579*********************98 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 4.8e-05
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleia.rrllGpdhpltattlrnLgrlyralgry 61 
                 ++n+l+a l+   r +eA++ ++ka+++  + +    ++++a +  n+g +++a+g++
  CCD24172.1 477 MWNRLGASLANSNRSEEAIKAYHKAINLKpSFV--RARYNLAVASMNIGCYQEAAGHL 532
                 8999*************************7777..77888*********999999986 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.025
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdh 41 
                 a +nla++ +  g y+eA  +l ++l ++ +++G d+
  CCD24172.1 511 ARYNLAVASMNIGCYQEAAGHLLTVLKMH-QVHGQDN 546
                 6689************************9.6888877 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1      0.23   2.1e+02       7      82 .]     315     357 ..     295     378 .. 0.60
   2 !   14.3   0.6   3.7e-05     0.035      20      81 ..     438     500 ..     422     501 .. 0.84
   3 !   14.7   0.1   2.8e-05     0.026      26      80 ..     476     533 ..     471     535 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.23
                 HHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-SS CS
      ANAPC3   7 nAiflaerllaaetespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLekl 82 
                 +A + +e +                                  k++ ++ ++++ ++ ++++ +k   +iaaLe++
  CCD24172.1 315 DAAMAFEAAI---------------------------------KQDMNHVQAWLKLGLVQIQNEKELNGIAALESC 357
                 4444444444.................................445555555555555555555555555555543 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3.7e-05
                 H--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  20 tespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 ++++e  + l+l +y+n ++++ +e +++a k+n++++  +  ++ +l   ++ eeAi+a+ k
  CCD24172.1 438 ANDAEFQLCLGLLHYSNDDFDKTLECFQNAlKINPNDELMWNRLGASLANSNRSEEAIKAYHK 500
                 3444445557************************************************99876 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 2.8e-05
                 HHH..HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  26 ayl..lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 +++  l+ +l ++++ ++A++ ++ka +l+++  ++ry +A ++  ++ y+eA  +L 
  CCD24172.1 476 LMWnrLGASLANSNRSEEAIKAYHKAiNLKPSFVRARYNLAVASMNIGCYQEAAGHLL 533
                 55566788999999****************************************9996 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.52   4.9e+02     147     210 ..     332     395 ..     311     409 .. 0.84
   2 !   13.8   0.0   2.7e-05     0.026      12      71 ..     445     502 ..     421     540 .. 0.67

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.52
      TPR_15 147 afllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkara 210
                 + +l ++ ++ q+ ++ + + +++  ++l+p++  + ++l   +i+ g + ++ ++l +w + +
  CCD24172.1 332 QAWLKLGLVQIQNEKELNGIAALESCINLDPNNLLAMENLAISYINEGYDISAYNMLNKWLDIK 395
                 5688889999999999999999999*******99999999999999999999999999999876 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.7e-05
      TPR_15  12 lklatllykqgdvkkAlevLkeaaqkaapskdteyW.rtladLAwalqqedearkAyrqLl 71 
                 l l  l+y ++d++k le   ++a k++ ++d+  W r+ a LA ++++e ea+kAy + +
  CCD24172.1 445 LCLGLLHYSNDDFDKTLECF-QNALKIN-PNDELMWnRLGASLANSNRSE-EAIKAYHKAI 502
                 44566788888888888888.4455553.444444415556777777654.4556666544 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00024      0.22      80     122 ..     459     501 ..     441     505 .. 0.88
   2 ?    2.2   0.0      0.23   2.2e+02      57      93 ..     504     540 ..     500     544 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
        BTAD  80 ealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerl 122
                 + l+  +++++ +P +E ++  l + la s+r +eA+++Y+++
  CCD24172.1 459 KTLECFQNALKINPNDELMWNRLGASLANSNRSEEAIKAYHKA 501
                 566677999*******************************987 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.23
                 HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
        BTAD  57 leelrlealealaeaelrlGraeealaelealvaehP 93 
                 l+ ++++a   la a + +G+++ea++ l   +++h 
  CCD24172.1 504 LKPSFVRARYNLAVASMNIGCYQEAAGHLLTVLKMHQ 540
                 7778999999*******************99999885 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.82   7.8e+02       5      31 ..     447     471 ..     447     476 .. 0.77
   2 ?    5.7   0.0     0.018        17       2      31 ..     478     505 ..     478     510 .. 0.84
   3 ?    3.6   0.0     0.089        84       3      29 ..     513     539 ..     511     550 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.82
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkd 31 
                 L+ l+ +  d+++ +e+++   al   
  CCD24172.1 447 LGLLHYSNDDFDKTLECFQN--ALKIN 471
                 788999999***********..55544 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.018
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltkd 31 
                 +++L+    + ++ eeAi+ y +  a+   
  CCD24172.1 478 WNRLGASLANSNRSEEAIKAYHK--AINLK 505
                 58899999***************..66554 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.089
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLalt 29 
                 +nLa++  + G y+eA++++  +L ++
  CCD24172.1 513 YNLAVASMNIGCYQEAAGHLLTVLKMH 539
                 79****************999988776 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       9.3   8.8e+03      31      39 ..     461     469 ..     456     475 .. 0.57
   2 ?    5.3   0.0     0.021        20      15      33 ..     486     504 ..     481     507 .. 0.88
   3 ?    4.6   0.0     0.037        35      25      41 ..     523     542 ..     521     562 .. 0.67

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 9.3
         MIT  31 lelLlqalk 39 
                 le ++ alk
  CCD24172.1 461 LECFQNALK 469
                 566666666 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.021
         MIT  15 DnagnyeeAlelYkealel 33 
                  n++  eeA+++Y +a++l
  CCD24172.1 486 ANSNRSEEAIKAYHKAINL 504
                 588999**********986 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.037
         MIT  25 elYkealelLlqalk.e..k 41 
                  +Y+ea ++Ll++lk     
  CCD24172.1 523 GCYQEAAGHLLTVLKmHqvH 542
                 58************953441 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.35   3.3e+02      11      34 ..     451     474 ..     441     475 .. 0.87
   2 ?    7.6   0.0    0.0042         4       4      31 ..     512     539 ..     510     544 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.35
                 HHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  11 hyklgeYseArryvdalLeiEPen 34 
                 hy   ++++ +++ +  L+i P+ 
  CCD24172.1 451 HYSNDDFDKTLECFQNALKINPND 474
                 88999*****************86 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHT-HHHHHHHHHHHHHHT CS
  Fis1_TPR_C   4 lYylAlGhyklgeYseArryvdalLeiE 31 
                  Y lA++++ +g Y+eA   + ++L+++
  CCD24172.1 512 RYNLAVASMNIGCYQEAAGHLLTVLKMH 539
                 5****************99998888876 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.1     2e+03       4      14 ..     367     377 ..     365     384 .. 0.82
   2 ?   -0.3   0.0       1.1   1.1e+03       7      31 ..     446     470 ..     441     471 .. 0.86
   3 ?    6.7   0.2    0.0074         7       6      31 ..     479     504 ..     479     505 .. 0.94
   4 ?    3.9   0.1     0.054        51       4      33 ..     511     540 ..     509     547 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
      TPR_10   4 slnNLanalrq 14 
                 ++ NLa+ + +
  CCD24172.1 367 AMENLAISYIN 377
                 899****9965 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.1
      TPR_10   7 NLanalrqrgrydeAealleealai 31 
                  L+ ++++  ++d+ ++ ++ al i
  CCD24172.1 446 CLGLLHYSNDDFDKTLECFQNALKI 470
                 69999********999999999976 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0074
      TPR_10   6 nNLanalrqrgrydeAealleealai 31 
                 n L++ l + +r +eA + +++a+++
  CCD24172.1 479 NRLGASLANSNRSEEAIKAYHKAINL 504
                 78*********************986 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.054
      TPR_10   4 slnNLanalrqrgrydeAealleealairr 33 
                 ++ NLa+a  + g y+eA  +l  +l +++
  CCD24172.1 511 ARYNLAVASMNIGCYQEAAGHLLTVLKMHQ 540
                 678***********************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1562  (0.0871214); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.47
# Mc/sec: 3779.27
//
Query:       CCD24173.1  [L=405]
Description: hypothetical protein NDAI_0C05140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-72  244.5   0.2    1.7e-72  244.0   0.2    1.2  1  Glyco_transf_34  galactosyl transferase GMA12/MNN10 family


Domain annotation for each model (and alignments):
>> Glyco_transf_34  galactosyl transferase GMA12/MNN10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.0   0.2   9.6e-77   1.7e-72       1     239 []     132     383 ..     132     383 .. 0.98

  Alignments for each domain:
  == domain 1  score: 244.0 bits;  conditional E-value: 9.6e-77
  Glyco_transf_34   1 kepeivlllvsnekkce...nssgdhelllkvikNrvdYaekhgyeifykkvsalla..eemnsvWaklpairaamkkyPeaewiWwlDqdAli 89 
                      k+p+iv++l++ne+      ++++++++ + +i+++++Ya++hgy++++k+++  ++  +e+++ W+k++++r++ +++P+aew+WwlD d+li
       CCD24173.1 132 KDPKIVIILAANEGGGVlkwKNEEEWAIEKLSINDKKKYAKRHGYGLTIKDLTIAKRysHEYREGWQKVDILRQTKREFPNAEWFWWLDLDTLI 225
                      579***********9999999******************************999999999********************************** PP

  Glyco_transf_34  90 mnmdlsleehvlkperLeelllkntpv.vplrryketnlvedgedvlviisqdwnglnagsflirnsewsklllDlwadpllrekkkavtesde 182
                      m++d sle+h++  +rL++++ +  +  +pl   +++++ + ++d +++i+qd++g+n+gsf+i+n +w+ lllD+w+dp+ +e+k++v+e++e
       CCD24173.1 226 MEPDKSLEDHIF--NRLDSIVDRSLNEfNPLGLEQDIPYLDTSQDLEFLITQDCGGFNLGSFFIKNTKWADLLLDIWWDPVTYEQKHMVWEHRE 317
                      ************..*********98877****************************************************************** PP

  Glyco_transf_34 183 qsaleyllekhpevlskvglveqkvinsydegeke.........lgykegdlvvhfagCkvankca 239
                      q+ale l++++++++skvg+++ + in++++g+++         ++ +++d++v++agC+  ++c+
       CCD24173.1 318 QDALESLYATQSWIRSKVGFLPLRSINAFPPGACSefkddpryfYNPNDHDFLVNMAGCNFGRDCW 383
                      **************************************************************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2824.30
//
Query:       CCD24174.1  [L=218]
Description: hypothetical protein NDAI_0C05150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-35  120.2   5.1    4.2e-14   52.7   0.6    3.0  3  Sybindin  Sybindin-like family
    3.6e-07   30.3   1.1    5.2e-07   29.9   0.4    1.6  2  Sedlin_N  Sedlin, N-terminal conserved region


Domain annotation for each model (and alignments):
>> Sybindin  Sybindin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   6.1e-16   5.5e-12       1      57 [.       3      61 ..       3      77 .. 0.82
   2 !   23.0   0.1   6.9e-09   6.2e-05      63     101 ..     117     155 ..      99     165 .. 0.84
   3 !   52.7   0.6   4.7e-18   4.2e-14      97     142 ..     171     216 ..     164     217 .. 0.91

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 6.1e-16
    Sybindin  1 ifslyiinkaGgliyqkeaneekk..earpklstneklllasmlhslkaiasklspvka 57
                i+sl+i+nk+Ggliy+++++ + +  ++++ l++n++l+las+lh+++aias+l p   
  CCD24174.1  3 IQSLLIVNKSGGLIYHRNFTGTGSheQQKQPLNSNDYLILASTLHGVFAIASQLTPKAL 61
                799***************986654103456789***********************443 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 6.9e-09
    Sybindin  63 gssgievletdtfkLhclqtltGiKfvlitdtktnaead 101
                 ++sg++ l td+f+++++qt++G+Kf+ i++t + +  d
  CCD24174.1 117 NKSGLRQLCTDQFTMFIYQTMSGLKFIAISSTVMPQRQD 155
                 359**************************9998755554 PP

  == domain 3  score: 52.7 bits;  conditional E-value: 4.7e-18
    Sybindin  97 naeadsllrkiyelYsdyvlknPfyslempircelFdeklkelles 142
                 ++ ad +lrk+y lYsdyv+k+Pfys+empi+++lF++k++ ++++
  CCD24174.1 171 IQVADNFLRKVYCLYSDYVMKDPFYSMEMPIKSDLFEKKVNAMIDN 216
                 467899**********************************999876 PP

>> Sedlin_N  Sedlin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.34   3.1e+03       8      32 ..      15      40 ..       8      70 .. 0.62
   2 !   29.9   0.4   5.8e-11   5.2e-07      60     130 ..     128     215 ..     107     216 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.34
    Sedlin_N  8 plyelefssskekeekelkeL..nqfi 32
                 +y  +f+ ++++e+++ + L  n ++
  CCD24174.1 15 LIYHRNFTGTGSHEQQK-QPLnsNDYL 40
                57888888777666443.333233333 PP

  == domain 2  score: 29.9 bits;  conditional E-value: 5.8e-11
    Sedlin_N  60 klsvsayvtnskikflllhes................ssskkkdekikqffqevhelyvktlm.nPFykvneeirSpaFdkkvkklak 130
                 +++   y t+s++kf+ +  +                ++++   +   +f+++v+ ly +++m  PFy+ +++i+S  F+kkv+++ +
  CCD24174.1 128 QFTMFIYQTMSGLKFIAISSTvmpqrqdlnpdrnkniNPNNLAIQVADNFLRKVYCLYSDYVMkDPFYSMEMPIKSDLFEKKVNAMID 215
                 55666799**********9999**********88655555555556679************9956******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1684.87
//
Query:       CCD24175.1  [L=497]
Description: hypothetical protein NDAI_0C05160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-45  156.1   1.3    6.3e-39  133.9   0.9    2.2  2  Pkinase      Protein kinase domain
    3.6e-21   75.6   0.3    1.2e-20   73.9   0.2    1.8  2  Pkinase_Tyr  Protein tyrosine kinase
      6e-07   29.1   0.0    4.1e-06   26.3   0.0    2.0  1  Kinase-like  Kinase-like
    0.00062   19.8   0.0     0.0016   18.4   0.1    1.6  2  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   5.9e-08   0.00026       1      50 [.      10      59 ..      10      69 .. 0.92
   2 !  133.9   0.9   1.4e-42   6.3e-39      45     259 ..     102     323 ..      88     326 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.9e-08
                EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHH CS
     Pkinase  1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEik 50
                ye ++++G+Gs++ V+ ++++ t++  A+K+i k+++ ++ +++ + E k
  CCD24175.1 10 YEIISQIGSGSYSLVFHVKNTVTNDDLALKCIFKSNIPQMLNDNSIDERK 59
                78899********************************9999999888876 PP

  == domain 2  score: 133.9 bits;  conditional E-value: 1.4e-42
                 HHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH..HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE- CS
     Pkinase  45 vlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslsee..eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKit 140
                   rEi+++ k++ h+niv++ +v++ ++  +++++y + + +++++  +++++++   +kk++ q++++l+y+H+++i+H+D+KpeN+L+d+++++ ++
  CCD24175.1 102 HYREIALHLKVHeHKNIVTIHQVLQGTNITFMLMDYYPIDLFTSVVD-QRHFANDglLIKKVFLQLCSALKYCHKRNIFHCDIKPENLLLDSNDNVYVC 199
                 689********99*************************997777766.45555554589**************************************** PP

                 SGTTSEESSSSCSBCTTTSCGGGS-HHHH.............TTSCB..SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH CS
     Pkinase 141 DFGlakelessskltsfvgtseYlAPEvl.............keney..skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetk 224
                 DFGla++ +  +  +  +g+s+Y+APE l             ++++     k D+WslG+il++l++ ++p+ + ++ e       +  ++++ + + +
  CCD24175.1 200 DFGLATNSNYFT-PNVCIGSSYYMAPERLlyssddhnnsitnETTPLlpNCKGDIWSLGIILINLVCIRNPWLKAHQLE-------D--TTFHYFVKDS 288
                 ********9988.9***************999887554433322333233478*******************9433333.......2..1122222333 PP

                 ...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 225 eklpeaseiseeakdllkkllkkdpkkRltaeell 259
                 + l++   is+++ +ll k+++ +p +R+  +el+
  CCD24175.1 289 NVLKKILPISDDLYELLLKMFELNPYHRIVLDELM 323
                 344555567*******************9988876 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.18   7.9e+02       3      35 ..      12      44 ..      10      79 .. 0.71
   2 !   73.9   0.2   2.7e-24   1.2e-20      50     257 ..     104     324 ..      89     326 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.18
                 EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEE CS
  Pkinase_Tyr  3 lgkklGeGafGkVvegtlkgekekkevkVavKt 35
                 + +++G+G+++ V++ + + ++++  +k++ K+
   CCD24175.1 12 IISQIGSGSYSLVFHVKNTVTNDDLALKCIFKS 44
                 67899********99998866666666666654 PP

  == domain 2  score: 73.9 bits;  conditional E-value: 2.7e-24
                  HHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-S CS
  Pkinase_Tyr  50 eeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisD 146
                  +e+++  k+ +h+niv ++ v   ++ ++++++y +   + + + ++ + + +   + ++ lq++++++y +++++ H d+   N Ll++n+ v ++D
   CCD24175.1 104 REIALHLKVhEHKNIVTIHQVLQGTNITFMLMDYYPIDLFTSVVDQR-HFANDGLLIKKVFLQLCSALKYCHKRNIFHCDIKPENLLLDSNDNVYVCD 200
                  5666666666*************9999**********9999999888.5555556667899************************************* PP

                  TTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE...............EEHHHHHHHHHHHHHHHHTTSSGT...TTTSHHHHHHHHHHTTEES-B CS
  Pkinase_Tyr 147 fGLardiekddeyvkkeeaklpvkWmapEslkekk...............ftsksDvWsfGvllwEiftlgesp...ypglkneevleklkegkrlek 226
                  fGLa +     +y + + +  +  +mapE l +++                + k D+Ws G++l+ +++  ++p    ++l+++++  ++k+++ l+k
   CCD24175.1 201 FGLATNS----NYFTPNVCIGSSYYMAPERLLYSSddhnnsitnettpllPNCKGDIWSLGIILINLVC-IRNPwlkAHQLEDTTFHYFVKDSNVLKK 293
                  ****987....9999999*************999889999*999999988899***************9.56662223444667788889******** PP

                  BTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 227 pekcpeelyelmkkcweedpeeRptfselve 257
                     ++++lyel+ k +e +p +R  + el+ 
   CCD24175.1 294 ILPISDDLYELLLKMFELNPYHRIVLDELMV 324
                  ***********************99999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   9.1e-10   4.1e-06      21     285 ..      17     313 ..       9     316 .. 0.59

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 9.1e-10
  Kinase-like  21 kkgdrsvvfevkdqetgeplavkvfllps...easkkdlerlkeqelairllrg...knpeq...Ak.dhlrl..llpfdlvkiqkkkpfi...qlks 103
                  + g  s+vf+vk+  t+++la+k     +       + +++ k+q++  ++l     +n++     + d   +  l    l +i++ + ++   ++++
   CCD24175.1  17 GSGSYSLVFHVKNTVTNDDLALKCIFKSNipqMLNDNSIDERKKQAIYQNELETyfkQNNNVlflPNiDLESImnLTDAQLSQIPHYREIAlhlKVHE 114
                  55666667777777777777776544333111334455666666666555554422111111111111111111123333455555555431112222 PP

  Kinase-like 104 kesiywvvnallllpaasvdl........eilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvr 193
                  +++i        +l+  ++          +++ +v+++r+  +  l  + +++  lql     + +++ ++h +++++nllld +  +++ +f+ L +
   CCD24175.1 115 HKNIV---TIHQVLQGTNITFmlmdyypiDLFTSVVDQRHFANDGL--LIKKVF-LQLCSALKYCHKRNIFHCDIKPENLLLDSNDNVYVCDFG-LAT 205
                  33333...33333333322223344444455666665554443333..333333.7999999*******************************8.777 PP

  Kinase-like 194 agtkvvlseve...kgf.aPpEllgsrgg.....ytrknktkmthkldaWqlGlviyriwclklPltlateeakeew........kfklckkipekvk 274
                    ++    +v+     + aP  ll s         ++   +    k d W lG+    + c+  P  +a ++    +         +k++ +i++ + 
   CCD24175.1 206 NSNYFT-PNVCigsSYYmAPERLLYSSDDhnnsiTNETTPLLPNCKGDIWSLGIILINLVCIRNPWLKAHQLEDTTFhyfvkdsnVLKKILPISDDLY 302
                  777776.5666565334255556655544122211222233345677***********************999999999999999999999******9 PP

  Kinase-like 275 aLlkkfLqlsq 285
                   Ll k+ +l+ 
   CCD24175.1 303 ELLLKMFELNP 313
                  99999988775 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.83   3.7e+03       3      26 ..      14      39 ..      13      50 .. 0.78
   2 !   18.4   0.1   3.5e-07    0.0016     168     200 ..     178     208 ..     138     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.83
                EEE--.SSCEEEEEEETT-..-EEEE CS
         APH  3 relsggasnrtylvttpag..ryvlr 26
                 ++++g ++ +++v+ + +  +++l+
  CCD24175.1 14 SQIGSGSYSLVFHVKNTVTndDLALK 39
                6899**********988743577776 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 3.5e-07
                 EE-SS-SGGGEEEC..TTEEEEE---TT-EEEE CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfedaglgp 200
                 + H+D++p Nll+d++d+   +v Df++a+ ++
  CCD24175.1 178 IFHCDIKPENLLLDSNDNV--YVCDFGLATNSN 208
                 78************66666..5*******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3385.13
//
Query:       CCD24176.1  [L=190]
Description: hypothetical protein NDAI_0C05170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-07   30.8   0.0    3.2e-07   30.4   0.0    1.1  1  APS_kinase   Adenylylsulphate kinase
    1.3e-06   28.6   0.0    1.7e-06   28.3   0.0    1.1  1  AAA_33       AAA domain
    1.7e-06   28.6   0.2    5.8e-06   26.9   0.2    1.8  1  AAA_18       AAA domain
    0.00045   20.6   0.0     0.0007   20.0   0.0    1.4  1  AAA_16       AAA ATPase domain
     0.0014   18.0   0.0      0.002   17.4   0.0    1.3  1  Zeta_toxin   Zeta toxin
     0.0023   18.5   0.0     0.0028   18.2   0.0    1.4  1  ABC_tran     ABC transporter
     0.0032   17.6   0.0     0.0045   17.1   0.0    1.3  1  SKI          Shikimate kinase
     0.0036   17.2   0.0     0.0057   16.5   0.0    1.4  1  CPT          Chloramphenicol phosphotransferase-like protein
     0.0057   15.7   0.4      0.011   14.9   0.0    1.5  2  T2SSE        Type II/IV secretion system protein
     0.0072   16.6   0.0      0.011   16.1   0.0    1.4  1  AAA_22       AAA domain
  ------ inclusion threshold ------
       0.01   15.6   0.6      0.012   15.4   0.6    1.1  1  AAA_15       AAA ATPase domain
      0.014   14.6   0.1      0.034   13.4   0.1    1.5  1  NB-ARC       NB-ARC domain
      0.015   14.9   0.1      0.064   12.8   0.0    1.9  2  AAA_7        P-loop containing dynein motor region
      0.024   14.3   0.3      0.042   13.6   0.3    1.3  1  AAA_29       P-loop containing region of AAA domain
       0.03   14.0   0.0      0.047   13.4   0.0    1.3  1  AAA_30       AAA domain
      0.037   13.9   0.0      0.069   13.1   0.0    1.4  1  RsgA_GTPase  RsgA GTPase
      0.055   13.9   0.0       0.12   12.8   0.0    1.6  1  AAA          ATPase family associated with various cellular a
      0.085   12.7   0.5         10    5.9   0.0    2.2  2  dNK          Deoxynucleoside kinase
       0.12   11.5   0.1       0.66    9.1   0.0    1.9  2  DUF815       Protein of unknown function (DUF815)
       0.13   12.0   0.0       0.25   11.1   0.0    1.5  1  PRK          Phosphoribulokinase / Uridine kinase family


Domain annotation for each model (and alignments):
>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   3.6e-10   3.2e-07       3     110 ..      12     124 ..      10     142 .. 0.85

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 3.6e-10
                 EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHT.....TTTTTT--SSHHHHHHHHHHHHHHHHHHHHT.T-EEEEE----SHHHHHHHHHH CS
  APS_kinase   3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnvR.....hgLnkdLgfseedRkenirrvaevakllada.glivlvafisPyreeReaarel 95 
                  ++ l+G +g+GKstia  + ++ +++  + + ++Gd +      ++++++++  +edR+  + ++ae a   a++    ++++  s  ++ R+++r++
  CCD24176.1  12 KIIVLAGTAGTGKSTIADLILRTFKKDFPKLEFVEGDDLHpaanvEKMSHGIPLGDEDRWGWLEKIAETAGSNAKKdDGQTIISCSSLKKKYRDRIRNV 110
                 6899*********************************99744333578899******************98776541456788999999********** PP

                 HHCHTEEEEEEEE-- CS
  APS_kinase  96 leealkfievfvdtp 110
                   ++ +f+ +f+ ++
  CCD24176.1 111 WPNG-DFYFIFLYAS 124
                 **97.9999998765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.9e-09   1.7e-06       2     134 ..      14     150 ..      13     154 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.9e-09
      AAA_33   2 vllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfgtdqqsktdytr..vldrlyqilnelarkalsag.rnvildatnlsrrerarflkla 92 
                 ++l G +G+GKst a+ +l+  +      ++++ d+l+ +  +++  +   + +   + +l +i +e+a +++++  +++i+    l+++ r+r+++++
  CCD24176.1  14 IVLAGTAGTGKSTIADLILRTFKkdfpkLEFVEGDDLHPAANVEKMSHGIPLGDedRWGWLEKI-AETAGSNAKKDdGQTIISCSSLKKKYRDRIRNVW 111
                 8999**************988889999************9999777766543331133344444.57777777555266******************** PP

      AAA_33  93 rrlgvpvrivvvetdeetlkeRlakRaangddrsevpeeald 134
                 ++    +  +++ ++  ++ +Rl++R+ +   + ++ e++++
  CCD24176.1 112 PNG--DFYFIFLYASKIEILRRLKQRMGHFM-KENMMESQFN 150
                 *54..589******************99743.3456666665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.2   6.5e-09   5.8e-06       1     119 [.      14     141 ..      14     153 .. 0.65

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 6.5e-09
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.......gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaak 92 
                 I+l+Gt+G+GK+t+a+ + +   f        ++ +d +     ++   +    +   +d++   + + +  +++++ ++g++  i ++ +   +++++
  CCD24176.1  14 IVLAGTAGTGKSTIADLILRT--FkkdfpklEFVEGDDLHPAANVEKMSHG--IPLGDEDRWGWLEKIAETAGSNAKKDDGQT--IISCSSLKKKYRDR 106
                 89****************555..2333455534444444444444444444..466666666655555555555545555555..44566666666666 PP

      AAA_18  93 dikk........vvLtaspeelleRlekRgyeeak 119
                 +++         ++L+as+ e l+Rl++R  +  k
  CCD24176.1 107 IRNVwpngdfyfIFLYASKIEILRRLKQRMGHFMK 141
                 66667999*********************876655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   7.8e-07    0.0007      20      51 ..       7      38 ..       3     111 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 7.8e-07
      AAA_16 20 rsgrpelvllsGesGvGKsslvrellralekd 51
                +++r+ +++l G +G+GKs++++ +lr ++kd
  CCD24176.1  7 STQREKIIVLAGTAGTGKSTIADLILRTFKKD 38
                566779*********************99999 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.3e-06     0.002      12      43 ..       7      38 ..       1      85 [. 0.71

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.3e-06
  Zeta_toxin 12 sqerPklillgGqpGAGKselaellkdelerq 43
                s +r k+i+l+G  G GKs++a+l+ + ++++
  CCD24176.1  7 STQREKIIVLAGTAGTGKSTIADLILRTFKKD 38
                45899********************9998533 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.1e-06    0.0028       8      51 ..       8      52 ..       2     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.1e-06
                EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran  8 lkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlke 51
                 ++ +++++ G  G+GKSt++ l+++  k++  ++++  g+dl+ 
  CCD24176.1  8 TQREKIIVLAGTAGTGKSTIADLILRTFKKDFPKLEFVeGDDLHP 52
                578899********************9998776665543555555 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     5e-06    0.0045       2     117 ..      21     146 ..      20     188 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5e-06
                 TSSHHHHHHHHHHHH.....TSEEEEHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCS....SEEEEE-TTGGGSHHHHHHHH.....HHS CS
         SKI   2 GaGKstvGkllAkkl.....glefiDlDeliekrtgksiaeifeeegeegFrelEsevlkelleee....glViatGGGavlseenrellk.....ekg 86 
                 G+GKst++ l+ ++      +lef++ D+l+  ++  ++++ +   +e+++  lE+ +  + ++ +    + +i++   + l++++r+ ++        
  CCD24176.1  21 GTGKSTIADLILRTFkkdfpKLEFVEGDDLHPAANVEKMSHGIPLGDEDRWGWLEKIAETAGSNAKkddgQTIISC---SSLKKKYRDRIRnvwpnGDF 116
                 99*******999887333335899*******877777777777766665555555544333333335589******...99*********999987778 PP

                 EEEEEE--HHHHHHHHHHTTSSGGGCSCHHH CS
         SKI  87 iviyLdvsleellerlkadkeRPllqekske 117
                 ++i+L +s  e+l+rlk++    +++e++ e
  CCD24176.1 117 YFIFLYASKIEILRRLKQRMG-HFMKENMME 146
                 8****************9998.355555542 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.4e-06    0.0057       2     120 ..      12     125 ..      11     148 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6.4e-06
                 -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEH...HHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHHTT-EEEEEE--TTTHH CS
         CPT   2 riilLnGgsssGKsslaralqevldepwlhlgv...DafvealppkrqdeadglefeteleeigpeldlllaalyeavaamaraGnnvivDdvilekew 97 
                 +ii+L G++ +GKs++a  +  ++++ + +l+    D ++ a   +++++++ l   ++++  g + +    a + + +a  + G+ +i    + +k  
  CCD24176.1  12 KIIVLAGTAGTGKSTIADLILRTFKKDFPKLEFvegDDLHPAANVEKMSHGIPL---GDEDRWGWLEKI---AETAGSNAKKDDGQTIISCSSLKKKY- 103
                 79**********************999987753333777776666666666666...333333333332...33334456666676666653333333. PP

                 HHHHHHHHHTTS-EEEEEEE--H CS
         CPT  98 lvdllrrllsgldvllVGvrcpl 120
                   d++r++  + d++++ + ++ 
  CCD24176.1 104 -RDRIRNVWPNGDFYFIFLYASK 125
                 .5666666666666666665555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.2e-05     0.011     126     160 ..       8      42 ..       3      49 .. 0.84
   2 ?   -3.1   0.1       3.6   3.2e+03     237     260 ..     126     150 ..     124     154 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
       T2SSE 126 vrerglilvsGgTgsGKttllyallkeinksderi 160
                  +++++i+++G+ g+GK+t++  +l +++k+  ++
  CCD24176.1   8 TQREKIIVLAGTAGTGKSTIADLILRTFKKDFPKL 42 
                 578999********************999985555 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.6
       T2SSE 237 agalerLeq.lgaeveaaelkssil 260
                 ++ l+rL+q +g+ +++++++s+ +
  CCD24176.1 126 IEILRRLKQrMGHFMKENMMESQFN 150
                 5667788653776688887777665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-05     0.011       4      31 ..      10      37 ..       6     108 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqlde 31
                +++i+v+ G +GtGK+t +  +l+++++
  CCD24176.1 10 REKIIVLAGTAGTGKSTIADLILRTFKK 37
                789*****************99999854 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.6   1.3e-05     0.012      24     127 ..      12     148 ..       6     190 .] 0.64

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.3e-05
      AAA_15  24 eltvliGkNnsGKSsilealdlFlnnkekkn..........................................kkvikiekedleifeniseskdikId 80 
                 ++ vl G+ ++GKS+i++++   ++++  +                                           ++++k++ + +  + + +++++ +I+
  CCD24176.1  12 KIIVLAGTAGTGKSTIADLILRTFKKD--FPklefvegddlhpaanvekmshgiplgdedrwgwlekiaetagSNAKKDDGQTIISCSSLKKKYRDRIR 108
                 4899****************7777755..3366788888899999999999999999999999988888888877777777777777778888888887 PP

      AAA_15  81 vefaekekakeyektlkskekkkadlllkkkesdlkktikdkklklk 127
                       ++ + y+ +l+ ++++    +l ++++++  ++k+++++ +
  CCD24176.1 109 NVW---PNGDFYFIFLYASKIE----ILRRLKQRMGHFMKENMMESQ 148
                 777...4555555555555444....334444445555555554432 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   3.7e-05     0.034      21      45 ..      12      36 ..       3      46 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.7e-05
                EEEEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC 21 lvvalvGmgGvGKttlakqilnksd 45
                 ++ l G +G GK+t+a  il+ ++
  CCD24176.1 12 KIIVLAGTAGTGKSTIADLILRTFK 36
                6999****************99865 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.1e-05     0.064      28      60 ..       6      38 ..       2      56 .. 0.86
   2 ?   -0.6   0.0      0.91   8.1e+02     121     149 ..     124     152 ..     120     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.1e-05
       AAA_7 28 lllknkkpvllvGptGtGKtviikdllkkldke 60
                   +++k ++l G++GtGK++i+  +l++++k+
  CCD24176.1  6 SSTQREKIIVLAGTAGTGKSTIADLILRTFKKD 38
                567889999**************9999999854 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.91
       AAA_7 121 ppiellRqlldyggwYdrkklefkeikdv 149
                 + ie+lR l ++ g + +++++  + +d+
  CCD24176.1 124 SKIEILRRLKQRMGHFMKENMMESQFNDL 152
                 57999999999999999999887777776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   4.7e-05     0.042      21      40 ..      10      29 ..       2      35 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.7e-05
      AAA_29 21 lkgatlltGpsGsGKSTllD 40
                ++ +++l+G+ G+GKST+ D
  CCD24176.1 10 REKIIVLAGTAGTGKSTIAD 29
                344899************99 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.2e-05     0.047      15      42 ..       8      35 ..       3      61 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.2e-05
      AAA_30 15 tsgdrvavltGpAGtGKttalkalreaw 42
                t+++++ vl G AGtGK+t+   + +++
  CCD24176.1  8 TQREKIIVLAGTAGTGKSTIADLILRTF 35
                5667899************988876655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.7e-05     0.069      98     121 ..      10      33 ..       3      60 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.7e-05
                  TTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallp 121
                  ++k++vl+G  G GKSt+ + +l 
   CCD24176.1  10 REKIIVLAGTAGTGKSTIADLILR 33 
                  679***************998875 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00013      0.12       1      28 [.      14      41 ..      14      62 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
                EEEESSTTSSHHHHHHHHHHHHTHEEEE CS
         AAA  1 vllyGppGtGKTllakavakelgvefle 28
                ++l G+ GtGK+++a  + ++++ +f +
  CCD24176.1 14 IVLAGTAGTGKSTIADLILRTFKKDFPK 41
                5799****************99755533 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.012        10       1      21 [.      14      34 ..      14      48 .. 0.83
   2 ?    5.4   0.1     0.016        15     125     149 ..     117     141 ..      91     189 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.012
                EEEEESTTSSHHHHHHHHHCC CS
         dNK  1 ivveGnIgaGKstlvklLskk 21
                iv+ G+ g GKst+++l+ ++
  CCD24176.1 14 IVLAGTAGTGKSTIADLILRT 34
                899************966554 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.016
                 EEEEEE--HHHHHHHHHHCTTCCCT CS
         dNK 125 lliYLkasletclerikkRgreeek 149
                  +i+L as  ++l+r+k+R  ++ k
  CCD24176.1 117 YFIFLYASKIEILRRLKQRMGHFMK 141
                 59*****************766544 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00074      0.66      56      91 ..      14      49 ..       4      61 .. 0.79
   2 ?   -0.0   0.1      0.44     4e+02     101     128 ..     156     183 ..     139     188 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00074
      DUF815 56 vLLwGarGtGKSslvkallneyaeegLrlieveked 91
                ++L G+ GtGKS++   +l++++++  +l  ve +d
  CCD24176.1 14 IVLAGTAGTGKSTIADLILRTFKKDFPKLEFVEGDD 49
                789****************99999885554445555 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.44
      DUF815 101 llrerperfilfvDDLsFeeeeeeyksL 128
                  ++++++ fi+ +D  +Fe+ e+e  +L
  CCD24176.1 156 DVEKEQHCFIVKLDGKTFEHIEDETIEL 183
                 477888999**********999887666 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00028      0.25       1      46 [.      13      58 ..      13      63 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
         PRK  1 vIgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraek 46
                +I +ag  G Gk+t+a  +   f++   k   +egd ++   ++ek
  CCD24176.1 13 IIVLAGTAGTGKSTIADLILRTFKKDFPKLEFVEGDDLHPAANVEK 58
                799********************98777777789888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1335.06
//
Query:       CCD24177.1  [L=388]
Description: hypothetical protein NDAI_0C05180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.37   10.7   1.7        1.1    9.3   0.0    2.6  3  F-box-like  F-box-like


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   5.9e-05       1.1       2      35 ..      82     113 ..      81     124 .. 0.85
   2 ?   -1.6   0.0      0.14   2.6e+03      35      46 ..     283     293 ..     280     294 .. 0.75
   3 ?   -2.4   0.1      0.25   4.6e+03      40      46 ..     339     345 ..     333     347 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 5.9e-05
  F-box-like   2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrva 35 
                 + LP Ei+ +IF  L  +d  +l lV + ++r+ 
  CCD24177.1  82 QALPGEIIQRIFV-L-SQDVNSLPLVNKTFYRFL 113
                 57**********6.3.679999*********986 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.14
  F-box-like  35 aldtplLWrrlv 46 
                 +  t +LW +l 
  CCD24177.1 283 IKET-ELWETLR 293
                 6667.9***986 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.25
  F-box-like  40 lLWrrlv 46 
                 ++Wrr +
  CCD24177.1 339 EIWRRYY 345
                 79*9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2815.43
//
Query:       CCD24178.1  [L=856]
Description: hypothetical protein NDAI_0C05190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-06   26.3   0.0    1.2e-05   25.5   0.0    1.4  1  ApbA_C    Ketopantoate reductase PanE/ApbA C terminal


Domain annotation for each model (and alignments):
>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   6.7e-10   1.2e-05       4     124 ..     217     349 ..     214     350 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 6.7e-10
      ApbA_C   4 larweKllinaainpltalldckn.gellespelralvrallkEalavaeaegvelsee.rleeaveavlek........taanrsSMlqDveagr..k 90 
                 ++ w+  +  +++ pl +ll+ +   +ll++  ++ l+  l+ E + +a+ ++v+l+++ + e+++ +v           + +n +S+l+   ++   +
  CCD24178.1 217 TKEWSMAIPKICLDPLLVLLEENEpTDLLDNILAKPLISGLITETMTIAKTLNVKLDTNiDNEDKILKVWSDnysentegKNENVPSILYHFINKSniP 315
                 6789999**************9998******************************99996555666666655555555446668999999988777689 PP

      ApbA_C  91 tEidyinGavvklAeklgvetPvnellyellkal 124
                 ++ d ++ +++ lA+  g++tP++e+l+++l++ 
  CCD24178.1 316 LNFDLLVLQPILLADNFGIKTPYLEFLFAMLSQF 349
                 9999**************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1991  (0.111049); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.31s 00:00:01.09 Elapsed: 00:00:00.48
# Mc/sec: 5353.26
//
Query:       CCD24179.1  [L=157]
Description: hypothetical protein NDAI_0C05200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-16   59.7   0.4    3.3e-16   59.0   0.1    1.6  2  NAC       NAC domain
  ------ inclusion threshold ------
      0.085   12.2   6.7       0.28   10.5   6.7    1.7  1  BUD22     BUD22
       0.11   12.5   0.2       0.35   10.9   0.0    1.7  2  DUF4865   Domain of unknown function (DUF4865)


Domain annotation for each model (and alignments):
>> NAC  NAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.6   9.9e+03       8      14 ..      11      18 ..       9      25 .. 0.57
   2 !   59.0   0.1   5.5e-20   3.3e-16       1      57 []      41      97 ..      41      97 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.6
         NAC  8 lkklgl.k 14
                l+kl + +
  CCD24179.1 11 LQKLSAkN 18
                56666644 PP

  == domain 2  score: 59.0 bits;  conditional E-value: 5.5e-20
         NAC  1 ekKlrkalkklglkeipgieeVtirksdgkvlvfdnPkVqkspgsntyvvfGeaeek 57
                ++Kl+++l+kl++ +++++ e++++k+dgkvl+f+++ Vq + +snt v++G ++ek
  CCD24179.1 41 DTKLQAQLAKLNAITVDNVAEANFFKADGKVLHFNRVGVQMASQSNTSVFYGLPQEK 97
                78*****************************************************97 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.7   4.6e-05      0.28      12     162 ..      16     142 ..       5     155 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4.6e-05
       BUD22  12 lkkakgferqklvkklKtakkekkskklerleeelealKslDleqiAekilaskllktkklaeseelpealksikdkkpksnpeekneelektkalenv 110
                 +k++ g  r+kl+kk  ++  ++++k+ ++l+++l++l ++ ++++Ae+ +++   k  ++++       ++      +              +    v
  CCD24179.1  16 AKNKVGGTRRKLTKKTGST--ANANKDDTKLQAQLAKLNAITVDNVAEANFFKADGKVLHFNRVG-----VQM----AS--------------QSNTSV 89 
                 4556677888888887444..8999999**************************99999999954.....222....11..............122468 PP

       BUD22 111 tsrLlnsktvkevveeivesv..kkllgiekkkkkkeeekkkkkkkkkkkkkke 162
                  + L + k++++ +++i++++  +++  + +  +++ + ++k++k++++++++ 
  CCD24179.1  90 FYGLPQEKNLQDLFPNIISQMgeESIQALTQ-LASQIQGSQKNGKEAAEEETEI 142
                 8999999999999999999886534444444.2222222233332233333333 PP

>> DUF4865  Domain of unknown function (DUF4865)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.22   1.3e+03     107     130 ..      33      56 ..      10      85 .. 0.55
   2 ?   10.9   0.0   5.8e-05      0.35      75     123 ..     101     149 ..      96     156 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.22
     DUF4865 107 ryavreveeikeeadlaalkeeel 130
                  +a  + +++k +a+la+l++ ++
  CCD24179.1  33 STANANKDDTKLQAQLAKLNAITV 56 
                 333333333333333333333333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.8e-05
     DUF4865  75 ggfqnivesFGrpavrtwvglaaelgdalakaryavreveeikeeadla 123
                 + f ni+++ G ++++  + la +++ + ++ + a +e++eik+++ ++
  CCD24179.1 101 DLFPNIISQMGEESIQALTQLASQIQGSQKNGKEAAEEETEIKDDSIPE 149
                 789***************************************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1378  (0.0768587); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1143.27
//
Query:       CCD24180.1  [L=255]
Description: hypothetical protein NDAI_0C05210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-10   40.0   5.1     0.0002   21.9   1.5    2.5  2  zf-C2H2_4     C2H2-type zinc finger
    7.5e-10   38.7   7.1    9.4e-05   22.7   2.2    2.6  2  zf-C2H2       Zinc finger, C2H2 type
    3.4e-05   24.0   4.6      0.033   14.5   0.5    2.5  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
    5.2e-05   23.1   2.1      0.089   12.8   0.2    2.3  2  zf-C2H2_6     C2H2-type zinc finger
     0.0003   20.5   3.4       0.33   10.8   0.4    2.4  2  zf-C2H2_11    zinc-finger C2H2-type
     0.0028   18.3   8.2     0.0032   18.2   1.7    2.7  3  zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
     0.0067   16.1   0.9     0.0067   16.1   0.9    3.6  3  zf-H2C2_5     C2H2-type zinc-finger domain
  ------ inclusion threshold ------
       0.11   12.6   0.5       0.27   11.4   0.3    1.7  1  Zn-ribbon_8   Zinc ribbon domain
        0.2   12.2  13.2       0.41   11.1   5.7    3.0  3  zf-C2HE       C2HE / C2H2 / C2HC zinc-binding finger
        0.2   12.1   8.4       0.92   10.1   1.1    3.2  3  zf-H2C2_2     Zinc-finger double domain
        1.9    7.2   3.6        2.2    7.0   3.6    1.1  1  Presenilin    Presenilin
        7.2    6.7  14.4        1.5    8.9  11.3    1.4  2  LicD          LicD family


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   1.5   1.3e-07    0.0002       1      23 [.     154     176 ..     154     177 .. 0.97
   2 !   19.1   0.1   1.1e-06    0.0016       2      22 ..     183     203 ..     182     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.3e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 fkC++C+  Fs++++L+rH kth
  CCD24180.1 154 FKCTQCSLIFSRSSDLRRHEKTH 176
                 8*********************9 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.1e-06
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkt 22 
                 +C++Cgk F +k+aL+rH++t
  CCD24180.1 183 ICSQCGKGFARKDALKRHFNT 203
                 6*****************976 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   2.2   6.3e-08   9.4e-05       1      23 []     154     176 ..     154     176 .. 0.98
   2 !   18.2   0.2   1.7e-06    0.0025       3      21 ..     184     202 ..     183     203 .. 0.92

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 6.3e-08
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 +kC+ C+  F+r+s+L+rH +tH
  CCD24180.1 154 FKCTQCSLIFSRSSDLRRHEKTH 176
                 8*********************9 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 1.7e-06
                 ETTTTEEESSHHHHHHHHH CS
     zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                 C+ Cgk F rk+ LkrH +
  CCD24180.1 184 CSQCGKGFARKDALKRHFN 202
                 *****************76 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.5   2.2e-05     0.033       2      24 ..     154     176 ..     153     177 .. 0.95
   2 !   10.9   0.3   0.00029      0.43       3      23 ..     183     203 ..     181     207 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2.2e-05
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  f C  C+  F+ +++l+ H+k++
   CCD24180.1 154 FKCTQCSLIFSRSSDLRRHEKTH 176
                  99*******************97 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00029
                  BBTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   3 YCvlCdKyFksenaldnHlkS 23 
                   C  C K F    al+ H+++
   CCD24180.1 183 ICSQCGKGFARKDALKRHFNT 203
                  699****************97 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   5.9e-05     0.089       2      25 ..     154     177 ..     153     179 .. 0.95
   2 !   10.0   0.1   0.00046      0.69       3      20 ..     183     200 ..     183     200 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.9e-05
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksHr 25 
                 ++C++Cs  F+   +L+ H k+H 
  CCD24180.1 154 FKCTQCSLIFSRSSDLRRHEKTHL 177
                 8**********************7 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00046
   zf-C2H2_6   3 eCsvCsksFpslqaLggH 20 
                 +Cs+C+k F   +aL  H
  CCD24180.1 183 ICSQCGKGFARKDALKRH 200
                 6*********99999666 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.4   0.00022      0.33       5      23 ..     154     172 ..     151     174 .. 0.94
   2 !    9.9   0.1   0.00039      0.59       7      23 ..     184     200 ..     183     202 .. 0.96

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00022
  zf-C2H2_11   5 cqCleCGlcftSqlsLsRH 23 
                 ++C++C l f+ +  L+RH
  CCD24180.1 154 FKCTQCSLIFSRSSDLRRH 172
                 69***************** PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00039
  zf-C2H2_11   7 CleCGlcftSqlsLsRH 23 
                 C +CG  f+ + +L+RH
  CCD24180.1 184 CSQCGKGFARKDALKRH 200
                 9**************** PP

>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1       1.5   2.2e+03      75      92 ..      64      81 ..      31      99 .. 0.49
   2 !   18.2   1.7   2.1e-06    0.0032      54     122 ..     106     174 ..      96     177 .. 0.87
   3 ?    3.0   0.0      0.11   1.6e+02      35      63 ..     184     212 ..     180     251 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.5
  zf-C2H2_3rep 75 edssqklelsksasvenn 92
                     +++ +++++ +++ +
    CCD24180.1 64 YYRNKNEDNKQTEKIDVK 81
                  112222222233333333 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2.1e-06
  zf-C2H2_3rep  54 svhpsdfklskvaqkknlsasedssqklelsksasvennsenesgvrkfvcrfcGlkfdllpdlGrhhq 122
                   +  +++++l++++++ ++ + ++ss k++l++++  +++ ++++ ++ f c  c l f    dl rh +
    CCD24180.1 106 TDTTNNLQLQNSNSDLKIGNDKNSSPKPKLKSKSNSKSKAKENDKEKEFKCTQCSLIFSRSSDLRRHEK 174
                   45577888889999899999999999*9999999999999999*********************99976 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.11
  zf-C2H2_3rep  35 cipcgshfgnaeelwlhvlsvhpsdfkls 63 
                   c  cg  f+ ++ l  h  ++  +  +++
    CCD24180.1 184 CSQCGKGFARKDALKRHFNTLTCKRNRKK 212
                   88999999999999999877665554433 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       3.3     5e+03       9      17 ..     105     113 ..     105     113 .. 0.86
   2 !   16.1   0.9   4.5e-06    0.0067       1      24 [.     154     176 ..     154     178 .. 0.95
   3 ?    1.4   1.3      0.19   2.8e+02      11      19 ..     192     200 ..     184     203 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.3
   zf-H2C2_5   9 stawksnLk 17 
                 +t + +nL+
  CCD24180.1 105 TTDTTNNLQ 113
                 6999***96 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 4.5e-06
   zf-H2C2_5   1 YKCsqCDYstawksnLkRHlrrkH 24 
                 +KC+qC+   +++s+L+RH + +H
  CCD24180.1 154 FKCTQCSLIFSRSSDLRRHEK-TH 176
                 9******************99.88 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.19
   zf-H2C2_5  11 awksnLkRH 19 
                 a+k+ LkRH
  CCD24180.1 192 ARKDALKRH 200
                 678999999 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00018      0.27       5      37 ..     153     193 ..     153     196 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00018
  Zn-ribbon_8   5 eYrCeeCghefevlqsis.dap......lta.CPeCgs.evr 37 
                  e++C++C   f +        +      l+  C +Cg+  +r
   CCD24180.1 153 EFKCTQCSLIFSRSSDLRrH-EkthlpiLPNiCSQCGKgFAR 193
                  8***********44444422.22466678888*****94444 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.7   0.00028      0.41      21      61 ..     133     176 ..      60     178 .. 0.84
   2 ?    4.9   0.6     0.024        36      39      59 ..     183     202 ..     180     207 .. 0.80
   3 ?   -1.9   0.1       3.3   4.9e+03      38      51 ..     204     217 ..     197     219 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
     zf-C2HE  21 i....eslseeqskelilktpLkCtrCganfgnkfpkLKeHLeee 61 
                      +s+s+ ++ke  +++++kCt+C+   ++   +L++H +++
  CCD24180.1 133 PklksKSNSKSKAKENDKEKEFKCTQCS-LIFSRSSDLRRHEKTH 176
                 04455566777777777***********.9999999999997777 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.024
     zf-C2HE  39 kCtrCganfgnkfpkLKeHLe 59 
                 +C +Cg+ f +k  +LK+H +
  CCD24180.1 183 ICSQCGKGFARK-DALKRHFN 202
                 6*****666555.99999975 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.3
     zf-C2HE  38 LkCtrCganfgnkf 51 
                 L+C r  ++  n++
  CCD24180.1 204 LTCKRNRKKLLNNI 217
                 66666666655555 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.2      0.02        29      11      21 ..     150     160 ..     145     165 .. 0.86
   2 ?   10.1   1.1   0.00061      0.92       1      25 [.     168     192 ..     168     193 .. 0.92
   3 ?   -1.7   0.0       3.2   4.8e+03       1       6 [.     196     201 ..     196     203 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.02
   zf-H2C2_2  11 gekpyeCplCd 21 
                 +ek+++C  C+
  CCD24180.1 150 KEKEFKCTQCS 160
                 699*******7 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00061
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 +LrrH ++H +  p  C+ C+k F+
  CCD24180.1 168 DLRRHEKTHLPILPNICSQCGKGFA 192
                 69********999999*******97 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.2
   zf-H2C2_2   1 nLrrHi 6  
                 +L+rH+
  CCD24180.1 196 ALKRHF 201
                 699**7 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.6    0.0015       2.2     238     313 ..      55     152 ..      32     222 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0015
  Presenilin 238 eeeaekkkeeasesskeeeseeesseksaqsse......................seeeseeesseaessaeesseekeseessesseeeeeeeeeee 313
                  +++ ++++  ++++++++++e+   k ++sse                      ++ + ++++s+ +  ++++s++k + +s+++s+++ +e+++e+
  CCD24180.1  55 IRQKYQDNNYYRNKNEDNKQTEKIDVKPTSSSEikkyeyllldllnknsvttdttNNLQLQNSNSDLKIGNDKNSSPKPKLKSKSNSKSKAKENDKEK 152
                 11111111122222222222222222222222233344455555555555554442223333333333333333333332222222222222222222 PP

>> LicD  LicD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9  11.3     0.001       1.5      62     185 ..      44     167 ..      29     183 .. 0.63
   2 ?   -2.9   0.0       4.1   6.2e+03     136     138 ..     211     213 ..     189     246 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.001
        LicD  62 kdknylenfaklldkntsiterkngngkndsglyiDIfpldyvpkskllikkkkekeklkkklalkkslskkdkkelkkkillkkksfklkklnkkkkl 160
                 +++++ ++ ak+++k +  +  +n+n++n++  +iD+ p ++ + +k+++   ++ +k+  + +++++l  +++++++k  + k++s k  kl+ k++ 
  CCD24180.1  44 TNSTNVTYNAKIRQKYQDNNYYRNKNEDNKQTEKIDVKPTSSSEIKKYEYLLLDLLNKNSVTTDTTNNLQLQNSNSDLKIGNDKNSSPKP-KLKSKSNS 141
                 56677777899999999999999999999***********99998888855555555555555554455555555555555444444333.33333333 PP

        LicD 161 kkleklekkk.eydlkkseyiavlks 185
                 k + k+ +k+ e + +++ +i+  +s
  CCD24180.1 142 KSKAKENDKEkEFKCTQCSLIFSRSS 167
                 33333333322566666666655444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.1
        LicD 136 kel 138
                 k+l
  CCD24180.1 211 KKL 213
                 111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2262  (0.126164); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.45
# Mc/sec: 1687.55
//
Query:       CCD24181.1  [L=451]
Description: hypothetical protein NDAI_0C05220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-13   48.4   1.9    8.9e-13   48.4   1.9    2.4  2  CLTH          CTLH/CRA C-terminal to LisH motif domain
    1.4e-05   25.0   0.3      4e-05   23.5   0.3    1.9  1  zf-RING_UBOX  RING-type zinc-finger
  ------ inclusion threshold ------
      0.068   13.1   0.4       0.17   11.9   0.4    1.6  1  zf-RING_5     zinc-RING finger domain
      0.085   12.8   0.0       0.25   11.3   0.0    1.8  1  DUF4083       Domain of unknown function (DUF4083)
       0.11   12.7   0.1       0.27   11.4   0.1    1.7  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
       0.19   12.1   0.8       0.43   11.0   0.8    1.6  1  zf-RING_2     Ring finger domain


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   2.8       1.2   3.5e+03      16      43 ..      28      55 ..      25     168 .. 0.71
   2 !   48.4   1.9     3e-16   8.9e-13       1     146 [.     207     351 ..     207     353 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.2
        CLTH 16 dlseaiewinenkpellesnsnLeFkLk 43
                +l+++++ + e++ +l++ + +L+ +++
  CCD24181.1 28 NLQQCLNDTREFRMNLRKLKAHLNKQIQ 55
                6777777777777777777666654443 PP

  == domain 2  score: 48.4 bits;  conditional E-value: 3e-16
        CLTH   1 sikerqkIiklilegdlseaiewin..enkpellesnsnLeFkLkllqfielirgktkdieealeyare...nl.efendehlkelekamsLLafsdpe 93 
                 ++ e+  Ii+++++ d +++ +w    en++  + + s+LeF+L   + ++ i+ k +di++a  +++e   +l +++ +e + +++++ +  +  +  
  CCD24181.1 207 KFVEMGTIIQDLKREDSTSCSRWLRlkENDNIYRPEFSSLEFELYIFNALQSIK-KGEDIQAAKYFIQEipkKLvMKKEKEIFSKISPLLTSVILGE-- 302
                 68899******************86115666666667*****************.559**************999999999********99999988.. PP

        CLTH  94 skelssplknlldpsrrekvakefnsailkllglskespLeillsaglsalkt 146
                     + p  +ll +++ ek++++f+ +++++++l+ +sp++++  +gl++++ 
  CCD24181.1 303 ----KVPNLELLINEQLEKCISLFTTDFCSYYNLPIDSPIFLITLSGLISFQF 351
                 ....358899**************************************99865 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.3   1.4e-08     4e-05       1      39 []     391     432 ..     391     432 .. 0.88

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 1.4e-08
  zf-RING_UBOX   1 CpIClelft..dP..lvlpCGHtFCreClwelskslegafkCP 39 
                   Cp+ +e+ t  +P    l+C+H++ r+ l  lsk++  +fkCP
    CCD24181.1 391 CPVLKEETTeeNPpfS-LSCHHIISRKALDRLSKNGAVTFKCP 432
                   ******9999955443.58**********879**********9 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   5.7e-05      0.17       7      42 ..     396     434 ..     390     435 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.7e-05
   zf-RING_5   7 eklskeekfyltsCgHifCekClkkll...ekeavCpiC 42 
                 e++++e +++ +sC+Hi+  k l++l+   +  ++Cp C
  CCD24181.1 396 EETTEENPPFSLSCHHIISRKALDRLSkngAVTFKCPYC 434
                 56678999*******************999999****99 PP

>> DUF4083  Domain of unknown function (DUF4083)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.4e-05      0.25      11      36 ..     338     363 ..     336     372 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.4e-05
     DUF4083  11 vivLilllvfsftlfiRrvvsrsaak 36 
                 +++++l +++sf +fi + ++r  a 
  CCD24181.1 338 IFLITLSGLISFQFFIKYKSIRATAH 363
                 899*******************7654 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   9.1e-05      0.27      11      42 .]     404     434 ..     401     434 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 9.1e-05
  zf-C3HC4_4  11 PvsleCGhsfClsCisslqkepdgeqllCplC 42 
                 P sl+C h++  + +++l+k+ + + + Cp C
  CCD24181.1 404 PFSLSCHHIISRKALDRLSKNGAVT-FKCPYC 434
                 99******************99665.*****9 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.8   0.00014      0.43       8      43 ..     396     434 ..     389     435 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00014
   zf-RING_2   8 eelssadsvlllpCgHvfhreClerwlrssst....CPlC 43 
                 ee ++++ +  l C H++ r+ l+r l ++      CP+C
  CCD24181.1 396 EETTEENPPFSLSCHHIISRKALDR-LSKNGAvtfkCPYC 434
                 5556666666789*999********.7777777******* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2808  (0.156618); expected 358.6 (0.02)
Passed bias filter:                      747  (0.0416643); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 3110.93
//
Query:       CCD24182.1  [L=507]
Description: hypothetical protein NDAI_0C05230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     2e-178  593.4   0.4   2.5e-178  593.0   0.4    1.1  1  Catalase      Catalase
    3.4e-11   43.2   0.0    1.4e-10   41.2   0.0    2.1  2  Catalase-rel  Catalase-related immune-responsive


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  593.0   0.4  2.8e-182  2.5e-178       1     380 [.      18     401 ..      18     404 .. 0.98

  Alignments for each domain:
  == domain 1  score: 593.0 bits;  conditional E-value: 2.8e-182
                 B-TTS-B-S-SSS-EEESTTS-BBTT-HHHHHHHHHHHT------SS--SEEEEEEEEEESS--TTT---GGGSSTT-EEEEEEEEE-SS--TT--SSS CS
    Catalase   1 ttseGapvsdnqnsltagerGplllqdvhlieklahfdreripeRvvhAkGagahgeFevtkdisdltkakllskvgkktpvlvRfStvagekgsadta 99 
                 t+s G p++++ +++++g++Gplllqd +li+ lahf+re ip R  hA+G+ga+g+Fevt+di+d++  ++++k+gkkt++l+RfStv+g+kgsadta
  CCD24182.1  18 TNSLGNPINEPFATQRVGQHGPLLLQDSNLIDLLAHFNRENIPQRLPHAHGSGAFGYFEVTDDITDVCGSAMFNKIGKKTRCLIRFSTVGGDKGSADTA 116
                 6788*********************************************************************************************** PP

                 SS--EEEEEEEETTEEEEEEEESSSS-S-S-GGGHHHHHHHHSB-TTT-SB-HHHHHHHHH..T-GGGHHHHHHHHSGGGSBS-GGGS-EE--S-EEEE CS
    Catalase 100 RdvrGfavkfyTeeGnwDlvgnntpvFfirDpikfpdlihsqkrepqtnlkdaamfwdfls..lnpeslhqvlilfsdrgipksyrhmngygvhtfklv 196
                 Rd+rGf++kfyTeeGn+D+v+nntpvFfirDp kfp++ih+q+r+p+tn++da+mfwdfl+  +n+ ++hqv+ilfsdrg+p+syrhmngy++ht+k+ 
  CCD24182.1 117 RDPRGFSTKFYTEEGNLDWVYNNTPVFFIRDPSKFPHFIHTQRRNPETNTPDANMFWDFLTtpENQVAIHQVMILFSDRGTPASYRHMNGYSGHTYKWS 215
                 ************************************************************94457889******************************* PP

                 -TT--EEEEEEEEEETT---B--HHHHHHHHHH-TTHHHHHHHHHHHTT---EEEEEEEEEEHHHHTTTHHHHT-TT----TTTS--EEEEEEEEEE-- CS
    Catalase 197 nkegevvyvkfhfktkqgvknltaeeaeklagedpdyatrdLyeaiekgeypewelyvqvmteeeaeklrfnilDlTkvwpekevplrevGkltLnrnp 295
                 nk+g+++yv++h+ t+qg+knlt eea k aged+d+ ++dL+++i+kg++p+w++y+q+mt++ea++l f+++DlTkvwp+k++plr+vG+++Ln+np
  CCD24182.1 216 NKNGDWKYVQVHIITDQGIKNLTIEEAIKKAGEDADFCQKDLFNSIAKGKFPSWTVYIQTMTQDEAKSLPFSVFDLTKVWPHKQFPLRRVGRIVLNENP 314
                 *************************************************************************************************** PP

                 S-HHHHTTT----TT---TTEE--S-HHHHHHHHHHHHHHHHHT-TTGGGSGGG--..-..---S----TT-.....S-S---SS-S CS
    Catalase 296 enyFaevEqvafspsnlvpGiepseDklLqgRlfsYadtqryRlGvnyqqlpvNrp..kakvanyqrdGamrveankgkepnYepns 380
                 +nyFa++E++af+psn+vp  eps+D++Lq+Rlf+Yad+qryRlG+ny+q+pvN+p  ++ +++  rdG+m+v+ n g+epnY ++s
  CCD24182.1 315 KNYFAQIEEAAFAPSNTVPYQEPSADPVLQARLFAYADAQRYRLGPNYHQIPVNCPyaSKMFNPAIRDGPMNVNGNFGNEPNYLNTS 401
                 ********************************************************8655666778*****************9887 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.2   1.1e+04      19      29 ..       9      19 ..       8      22 .. 0.85
   2 !   41.2   0.0   1.5e-14   1.4e-10       6      63 ..     436     495 ..     432     497 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.2
                  -HHHHHHHHHH CS
  Catalase-rel 19 seeekerlvnn 29
                  s+ +k+r+v+n
    CCD24182.1  9 SDVRKDRIVTN 19
                  7899****998 PP

  == domain 2  score: 41.2 bits;  conditional E-value: 1.5e-14
                   -SSHHHHHHHH.HS-..HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-HHHHHHHHH CS
  Catalase-rel   6 dhfsQagllyr.sms..eeekerlvnniafelskvedeeiqerqlehfakvDpdlgqrVae 63 
                    +f Qa++ly  ++s  + ++erl++ni  +++ +  + iq+r++++fakvD++l++++++
    CCD24182.1 436 IDFVQARELYTkVLSkqPGAQERLAHNIGIHIAPAA-DTIQQRVINMFAKVDKNLANGIRK 495
                   58********8899833569***************8.**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3727.91
//
Query:       CCD24183.1  [L=502]
Description: hypothetical protein NDAI_0C05240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        3.4    6.9  23.3        1.3    8.3  18.5    2.4  2  NOA36     NOA36 protein


Domain annotation for each model (and alignments):
>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  18.5   7.1e-05       1.3     239     299 ..     115     176 ..      67     184 .. 0.61
   2 ?   -0.0   0.1     0.024   4.3e+02     277     298 ..     408     429 ..     370     439 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 7.1e-05
       NOA36 239 kqadgsddddddeedsdydaylkalasgddeddegded.ddddddeedddeeeddedeeeee 299
                 +q+++  d+d+ ++ds  ++ +++  +g+++d+++++d dddddd++d   ee+d++ +eee
  CCD24183.1 115 NQEQHLIDEDHSSNDSATESLHDQEQAGKEKDNNNNDDdDDDDDDDKDSTLEENDDNMQEEE 176
                 44444455555667777776666665555555444444044444444444444444444443 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.024
       NOA36 277 ddddddeedddeeeddedeeee 298
                 ++++  e+++++e+ d   ee+
  CCD24183.1 408 KQEQAREQEENDENPDLAIEED 429
                 2222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1826  (0.101846); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.31s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 3297.17
//
Query:       CCD24184.1  [L=402]
Description: hypothetical protein NDAI_0C05250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-94  314.4   1.1    6.8e-94  314.2   1.1    1.1  1  Anp1            Anp1
  ------ inclusion threshold ------
       0.26   11.3   3.4        6.6    6.7   0.3    2.3  2  Staphopain_pro  Staphopain proregion


Domain annotation for each model (and alignments):
>> Anp1  Anp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.2   1.1   7.6e-98   6.8e-94       1     264 []     101     370 ..     101     370 .. 0.95

  Alignments for each domain:
  == domain 1  score: 314.2 bits;  conditional E-value: 7.6e-98
        Anp1   1 tvekydlnklestadaaenkekvLiltplrdaekflpeyfenllkltyphelidLaflvsdtsegdktlealeeelkklqkkkkk...krfrsitilek 96 
                 ++++ydlnkl s+a+a enke+vLiltpl   ++f ++y+enll+l+yp++li+L+f+v++t++gd++l++le+++k++q  +kk   ++f++itil++
  CCD24184.1 101 HIAHYDLNKLVSSANALENKEHVLILTPL---QSFDEKYWENLLNLSYPRDLIELGFMVPNTKKGDQILKQLENAVKNVQGIDKKlgsNKFAKITILRQ 196
                 589**************************...************************************************98888999*********87 PP

        Anp1  97 dfgek....isqsesdrhkvevqklRRklmaraRNsLlssaLkpehswvlwlDaDivetpktliedlishdkdvivpnvlrklpdelek..eqpYDlns 189
                 + +        +++++ +++e++k++R+ ma aRN Llss+L+++++w+lwlD++++etp+tli+d+++hdk+v+++nv++k  + ++k  ++pYD+ +
  CCD24184.1 197 KDSGFhkfnDRKDKKEMNDIELEKEKRAEMALARNELLSSTLSHSTAWILWLDSNVIETPNTLIQDMTQHDKPVLATNVYMKDSNDKDKanIRPYDFRN 295
                 655442323344888889999**************************************************************99888557******** PP

        Anp1 190 WveseealelakkldeddvivegyaelatkrvhlaklrdengdpeeeveLDgVGgvsilvkaevfrqGamFpaft 264
                 W+es++al+la+++ ed++iveg+a lat+r++++++++++g+p+ee++LDg+G++++lvk+ev+r+GamFp+f+
  CCD24184.1 296 WIESDTALQLASEMPEDEIIVEGMAGLATNRQLMTNFYESDGSPTEELALDGIGAACTLVKSEVHRDGAMFPNFP 370
                 *************************************************************************96 PP

>> Staphopain_pro  Staphopain proregion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.3   0.00074       6.6      45      66 ..      49      70 ..      38      80 .. 0.86
   2 ?    5.2   0.2    0.0022        20      79     145 ..     156     223 ..     132     235 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00074
  Staphopain_pro 45 GeafkiykfnkesdgnyyyPvl 66
                    G +   ykf +e +g++y+P  
      CCD24184.1 49 GKPISQYKFAHEREGTFYFPFT 70
                    789999**************76 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0022
  Staphopain_pro  79 sPknkddkkskedsnysinvspflskvlnqykdkkitiltne.kGyyvltedgkvklvlktPrleekk 145
                      P++k+ ++  ++ + +++  + + k l   k  kitil ++  G++ +++ +  k +    +++ek+
      CCD24184.1 156 VPNTKKGDQILKQLENAVKNVQGIDKKLGSNKFAKITILRQKdSGFHKFNDRKDKKEMNDIELEKEKR 223
                     577777777777778888888999***************87527999887766555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       835  (0.0465726); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2802.37
//
Query:       CCD24185.1  [L=557]
Description: hypothetical protein NDAI_0C05260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.7e-114  380.9   0.0   9.1e-114  380.6   0.0    1.0  1  Alk_phosphatase  Alkaline phosphatase
    3.6e-06   26.5   0.0    1.4e-05   24.6   0.0    1.9  2  Metalloenzyme    Metalloenzyme superfamily
  ------ inclusion threshold ------
       0.11   12.7   0.8       0.29   11.5   0.8    1.7  1  Sigma_reg_N      Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> Alk_phosphatase  Alkaline phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  380.6   0.0  1.5e-117  9.1e-114       1     415 [.      66     511 ..      66     512 .. 0.91

  Alignments for each domain:
  == domain 1  score: 380.6 bits;  conditional E-value: 1.5e-117
                      -SEEEEEEETT-SHHHHHHHHHHHCHCTCSSSTTS.TTGGG-SEEEEEESSECSTTSSGHHHHHHHHHHSSBTBTT-BSB-TTST-B---HHHH CS
  Alk_phosphatase   1 aknvilligDGmgvstvtaaRslkeqakdklgeetllamdrfplvglsktyavdkqvtDSaataTAyacgvktyngaigvdaaagkevksvlea 94 
                      +knvil+i+DGmg+++++ +Rs+++  ++ ++++tl+ ++++  +g+s+t+++d+ +tDSaa+aTA++c +kt n+a+gv+ +  +++ ++lea
       CCD24185.1  66 KKNVILFITDGMGPASLSLTRSYRQFIENLPINDTLTLDNHL--IGSSRTRSSDSLITDSAAGATAFSCILKTKNNAVGVNDQ-YEPCGTLLEA 156
                      69***********************************99998..***************************************.9********* PP

                      HHHTT-EEEEEEEEETTSHHHHTTTTTBSSTTSSSHHHSTCCCHHTTS-SHHH.HHHHCST-SEEEEESCGGGSBCSBCTSSTCCT.SBHHHHH CS
  Alk_phosphatase  95 AkkaGkstGlVtTtritdAtPaalvahvesRkwkedaavpaealeegkkdiae.qlikakkidvllGGGrkeffpaeyatdGerkdGrnlieea 187
                      Ak +G  tGlV+TtritdAtPaa++ah++sR  +ed+         + +++ + + + +  +d+++GGGr++f    + + G r dGrnli+ea
       CCD24185.1 157 AKLDGLMTGLVVTTRITDATPAAFSAHSNSR-FQEDLI--------ALHQLGKhNNLGR-VVDLMIGGGRSHF--HGKDDGGVRIDGRNLIDEA 238
                      *******************************.999999........6677765145666.9************..566666************* PP

                      CCTTCEEE-SHHHHHHHCTST..SSCEEEESSSSSCS-CCCSCTCCE--HHHHHHHHHHHH...TTST.T-EEEEEEETCHHHHHHTTTHHHHH CS
  Alk_phosphatase 188 kkkgyqyvsdrkeLlkakeen..vkplLGLFadgdlkveldrdeatdPsLkemtevAiklL...skne.kGFFLlVEGsrIDhaaHendavgal 275
                       + g++y++dr+ + + +  +    plL L a++d++++ldr+++++PsL+e+  +A+++L    k++ kGFFL++EGsrIDha+Hend++ ++
       CCD24185.1 239 INDGWNYIDDRETFDSLQLGKnvSFPLLALLAENDIPFDLDRNPEEYPSLQEQAITAVNALveaTKDSdKGFFLMIEGSRIDHAGHENDPAAQV 332
                      *************8777765545789***********************************99966666************************* PP

                      HHHHHHHHHHHHHHHHCHH.CTTEEEEEEESSEESEEEESTTST.......T..TTSEECCEET.TTSSEE....................... CS
  Alk_phosphatase 276 sEvvefdeAvkaalefakk.eketlvvvTaDHshvfsfggyttr.......gesvlglepllaa.dkkpvl....................... 337
                      +Ev++fd+A++ +le+ ++ ++et+v++T+DH++    gg++t        +e+v+++  l++a +++++l                       
       CCD24185.1 333 REVLAFDKAFQSVLELVDEmDTETIVLSTSDHET----GGLVTArqvtktyPEYVWYPLYLQNAkHSGEFLkskilsfegtlddkklfiekkil 422
                      ****************9998**************....5555544566889**********9996677777*********************** PP

                      .....CEEECCSTT...BTTB.....HHHHTSTT.....EEE..SSHTEE-SSEEEEEESTTG.......GGGSCEEECCHHHHHHHHHCT CS
  Alk_phosphatase 338 .....lllYgngeetkelkgvredvtakeskead.yrkraavpltseeHtgedvavfAygpka.......elvrGvqeqteiakvlaaale 415
                           +  Y+n +       + ++ + +++k +d +++ra++++t+++H+++dv+++ y++++       ++++G++e+ ei++++ + l+
       CCD24185.1 423 qdilqIDDYNNDDV--NALAEMNNLDDIQYKLNDmVSFRAQIGWTTHGHSAVDVNIYGYANTKsswyhilDHLQGNHENLEIGEFIRQYLN 511
                      *9854445555554..4566778889999999999****************************9******9*************9998776 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.22   1.3e+03       1      16 [.      67      82 ..      67     110 .. 0.77
   2 !   24.6   0.0   2.4e-09   1.4e-05     116     191 ..     292     370 ..     257     409 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.22
                   -EEEEEEETTBB---- CS
                   xxxxxxxxxxxxxxxx RF
  Metalloenzyme  1 kkvvlvvlDGlGeapa 16
                   k+v+l ++DG+G a  
     CCD24185.1 67 KNVILFITDGMGPASL 82
                   6799********8765 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 2.4e-09
                    HHHHHHHHHHHH.CC.-S.....EEEEEE-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHTTS-TTTEEEEE..E-SSB--TTT CS
                    xxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx RF
  Metalloenzyme 116 avevaekaldailsgkfd.....lvvvniknaDmvGHtgdleatiaaieaaDeavkeildaieqvdgilvv..tADHgnaedm 191
                    a   ++++++a +    d     ++++     D +GH++d++a+++ + a+D+a + +l+ +++ d+  +v  t+DH +   +
     CCD24185.1 292 AITAVNALVEATK----DsdkgfFLMIEGSRIDHAGHENDPAAQVREVLAFDKAFQSVLELVDEMDTETIVlsTSDHETGGLV 370
                    3334455555553....333557999999******************************9999887655554499**876555 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.8   4.8e-05      0.29       2      34 ..      20      52 ..      19      73 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.8e-05
  Sigma_reg_N  2 kilkkakrksilrivlislivlllifvilvvtl 34
                 k l++ krk+i++ ++i+++++ +i+++ + ++
   CCD24185.1 20 KNLRRPKRKAIISSITITIVAITIILFYGFNNN 52
                 679********************9999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4121.85
//
Query:       CCD24186.1  [L=194]
Description: hypothetical protein NDAI_0C05270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-12   45.3   2.8    1.5e-11   44.2   2.8    1.6  1  cwf21     cwf21 domain


Domain annotation for each model (and alignments):
>> cwf21  cwf21 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   2.8   8.5e-16   1.5e-11       1      44 []     119     164 ..     119     164 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.2 bits;  conditional E-value: 8.5e-16
       cwf21   1 LeHerrReIEvkvlelrdeLEee..glseeeIeervdelRekLlke 44 
                 L+H  +R+IE++v+elrd+LE++  +l+++ I e++++lR +L+ke
  CCD24186.1 119 LSHLNKRKIELQVSELRDKLEDDdpNLPKDVIVEKCNKLRIELIKE 164
                 78********************63469****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1329  (0.0741257); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1399.07
//
Query:       CCD24187.1  [L=458]
Description: hypothetical protein NDAI_0C05280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-131  438.3  16.7   1.8e-131  438.3  16.7    1.4  2  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.11   2.1e+03       4      27 ..      51      74 ..      48     102 .. 0.59
   2 !  438.3  16.7  9.8e-136  1.8e-131      13     324 ..     103     406 ..      83     407 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.11
  Glyco_transf_15  4 eaeekknknkeklkkllkekanvk 27
                     ++++++++ +e++ +llk++ +  
       CCD24187.1 51 QQQQQQQQVQENVGNLLKQNDEDG 74
                     445555556677888886665533 PP

  == domain 2  score: 438.3 bits;  conditional E-value: 9.8e-136
  Glyco_transf_15  13 keklkkllkekanvknkakekstlefkpkslvnrgrkPiedenenAtllalvrnselakilrsikkvekrFnkkfnYpyvfindepftekfkek 106
                      k ++k+ lk+  ++k+ ++++  +ef+ +s+ n+g++P      +At+++lvrnsel+ +l +ik+v+k+Fn++fnY++vf+nd++ft++fk+k
       CCD24187.1 103 KTSTKN-LKNVPDIKDSLSKDI-VEFMAPSFENKGKRP------KATFVSLVRNSELNPMLDAIKSVQKKFNNQFNYDWVFLNDDDFTDEFKSK 188
                      223333.333444445455544.899*****99*****......************************************************** PP

  Glyco_transf_15 107 ieklveeadvefgeipkeewsyPefideekaakareeladiaygdsesyrhmcRyysGlfykhellkkydyYwRvePdiklycdieyDvfkymk 200
                      i++++ ++ ++fg+ipke+wsyP++i ++kaa++re++ +i+yg+sesyrhmcRy+sG+f++h+ +++yd+YwRveP+ klycdi+yDvf++m+
       CCD24187.1 189 IKETIPNSTIKFGKIPKEHWSYPDYISTDKAAETREKMKKIIYGSSESYRHMCRYQSGFFWRHPIMEDYDWYWRVEPSTKLYCDIKYDVFQWMQ 282
                      ********************************************************************************************** PP

  Glyco_transf_15 201 dekkiygFtlslkeieetiktlWdstkkflkenkefieeknslsflsdddqdtynlCeFwsnfeigdldffrseayekfFeylDskGgffYerW 294
                      d++k ygFt++++e+  ti+tlWd+ kkf +++++++ ++n ++f+sdd++++ynlC+Fwsnfe+++l+++rs+ay+++F+ylD++GgffYerW
       CCD24187.1 283 DNDKAYGFTITIHEYLSTIPTLWDTSKKFFEKHPDYLRKDNLMKFISDDGGKSYNLCHFWSNFEVANLNLWRSPAYTEYFDYLDHAGGFFYERW 376
                      ********************************************************************************************** PP

  Glyco_transf_15 295 gdapvhsiavslllpkdkihffedigyshd 324
                      gdapvhsiavs +lpkd+ih+f+digy+h 
       CCD24187.1 377 GDAPVHSIAVSAFLPKDRIHYFSDIGYHHP 406
                      ****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1169  (0.0652016); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3032.93
//
Query:       CCD24188.1  [L=379]
Description: hypothetical protein NDAI_0C05290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-09   37.1   8.6    7.6e-05   22.4   0.9    3.5  3  TPR_1       Tetratricopeptide repeat
    9.2e-09   34.8   4.1      0.012   15.7   0.2    3.5  3  TPR_2       Tetratricopeptide repeat
     0.0006   20.0   2.4     0.0017   18.5   0.9    2.1  2  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
     0.0016   18.0   2.1        2.7    7.8   0.3    3.3  3  TPR_11      TPR repeat
     0.0051   16.9   1.0       0.46   10.6   0.0    3.1  3  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
     0.0056   17.2   0.1       0.03   14.8   0.0    2.2  2  TPR_19      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.051   13.9   0.6        4.4    7.7   0.1    2.6  2  TPR_12      Tetratricopeptide repeat
      0.079   13.4   0.5       0.35   11.4   0.1    2.4  2  TPR_17      Tetratricopeptide repeat
      0.084   13.1   8.6        9.1    6.8   0.0    4.2  4  TPR_8       Tetratricopeptide repeat
      0.095   13.6   0.0         16    6.7   0.0    3.5  4  TPR_14      Tetratricopeptide repeat
        3.3    7.7   5.4        6.3    6.8   5.4    1.6  1  RAMPs       RAMP superfamily


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.7   0.00014      0.23       4      31 ..      79     106 ..      76     109 .. 0.91
   2 !   22.4   0.9   4.7e-08   7.6e-05       4      34 .]     118     148 ..     116     148 .. 0.95
   3 !    6.6   0.0    0.0044       7.1       9      34 .]     157     182 ..     149     182 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALeln 31 
                 ++n Gn ++k +++++A + y k ++++
  CCD24188.1  79 FKNQGNDLYKAKRFKDARDVYLKGIQIE 106
                 689**********************996 PP

  == domain 2  score: 22.4 bits;  conditional E-value: 4.7e-08
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPnn 34 
                 + n++++ ++l+++  ++ +++ AL+lnP+n
  CCD24188.1 118 FANKAACELELKNFRRCINDCKNALQLNPKN 148
                 579**************************98 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0044
                 HHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   9 nayfklgkydeAleyyekALelnPnn 34 
                  a+f l k++eA e  e  L+ +P+n
  CCD24188.1 157 RAFFALDKLEEAKESVEFGLKFDPEN 182
                 589*********************97 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.2   7.3e-06     0.012       2      33 ..      77     108 ..      76     109 .. 0.89
   2 !   14.6   0.2   1.6e-05     0.026       5      34 .]     119     148 ..     116     148 .. 0.93
   3 ?    4.3   0.0     0.033        53       4      34 .]     152     182 ..     149     182 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.3e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 e   n+G+ +yk++++++A++ + k ++++ n
  CCD24188.1  77 ENFKNQGNDLYKAKRFKDARDVYLKGIQIENN 108
                 566799*********************99865 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.6e-05
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                  n + + ++l+++ +++++++ Al+l+P+n
  CCD24188.1 119 ANKAACELELKNFRRCINDCKNALQLNPKN 148
                 5789999*********************97 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.033
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldPnn 34 
                 ++++ +a ++l+++eeA+e  e  l+ dP+n
  CCD24188.1 152 YFRMTRAFFALDKLEEAKESVEFGLKFDPEN 182
                 666667999*********9988777777765 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.58   9.4e+02      33      80 ..      86     100 ..      72     113 .. 0.71
   2 !   18.5   0.9     1e-06    0.0017      24      76 ..     115     169 ..     108     174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.58
                 HHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  33 lylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 ly                                 k k++++A++++ 
  CCD24188.1  86 LY---------------------------------KAKRFKDARDVYL 100
                 44.................................5555555555543 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1e-06
                 HHHHH.HHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  24 edayl.lAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAi 76 
                 e++++ +A c ++++++ r+++ +++a +ln+k+ +c + + ++ ++L+k+eeA 
  CCD24188.1 115 ESLFAnKAACELELKNFRRCINDCKNAlQLNPKNVKCYFRMTRAFFALDKLEEAK 169
                 566664699********************************************95 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.3    0.0016       2.7       1      26 [.      83     108 ..      83     110 .. 0.94
   2 !    7.5   0.0     0.002       3.3      18      39 ..     139     160 ..     135     163 .. 0.81
   3 ?    1.2   0.0      0.18     3e+02       3      27 ..     158     182 ..     157     185 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0016
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPd 26 
                 G+ +y+  ++++A  +Y k +++ ++
  CCD24188.1  83 GNDLYKAKRFKDARDVYLKGIQIENN 108
                 99*********************987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.002
      TPR_11  18 kkAlkldPdnaeayynLGlayy 39 
                 k+Al+l+P+n+  y+ +  a++
  CCD24188.1 139 KNALQLNPKNVKCYFRMTRAFF 160
                 89**********9998766665 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.18
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdn 27 
                 a++++ k+eeA e+ +  lk+dP+n
  CCD24188.1 158 AFFALDKLEEAKESVEFGLKFDPEN 182
                 899999****988877777888877 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.65   1.1e+03      12      34 ..      87     108 ..      86     113 .. 0.79
   2 ?    2.7   0.1     0.081   1.3e+02      14      34 ..     128     148 ..     122     151 .. 0.91
   3 !   10.6   0.0   0.00028      0.46      13      47 ..     161     195 ..     149     198 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.65
                 HHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  12 yklgeYseArryvdalLeiEPen 34 
                 yk +++++Ar      ++iE +n
  CCD24188.1  87 YKAKRFKDARDVYLKGIQIE-NN 108
                 99********9877777777.55 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.081
                 HT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  14 lgeYseArryvdalLeiEPen 34 
                 l++++++ + ++  L++ P+n
  CCD24188.1 128 LKNFRRCINDCKNALQLNPKN 148
                 89*****************99 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00028
                 HHT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH CS
  Fis1_TPR_C  13 klgeYseArryvdalLeiEPenrQaqsLkeliedk 47 
                  l + +eA++ v+  L+ +Pen    +L+ +i +k
  CCD24188.1 161 ALDKLEEAKESVEFGLKFDPENTSLINLHDTIIKK 195
                 577889*************************9987 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.8   2.9e+03      35      48 ..      86      99 ..      86     114 .. 0.73
   2 !   14.8   0.0   1.8e-05      0.03      12      48 ..     136     172 ..     118     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.8
      TPR_19 35 llalgqldeAealL 48
                l++++++++A+++ 
  CCD24188.1 86 LYKAKRFKDARDVY 99
                57888999998764 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.8e-05
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAealL 48 
                 +  ++alq +pkn     ++ +a +al  l+eA++ +
  CCD24188.1 136 NDCKNALQLNPKNVKCYFRMTRAFFALDKLEEAKESV 172
                 55799*****************************976 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0027       4.4      33      73 ..      66     104 ..      59     106 .. 0.79
   2 ?    3.7   0.0     0.048        78       8      66 ..     120     170 ..     115     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0027
      TPR_12  33 arrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                   ++ G+ h + a+   n g  +++++r+++A++ + + ++
  CCD24188.1  66 L-AYEGEPH-EIAENFKNQGNDLYKAKRFKDARDVYLKGIQ 104
                 4.4566777.8999999****************99988765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.048
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAle 66 
                 n aa++++l+++  ++  ++ al++      p++   + +++ + r+++al+++eeA e
  CCD24188.1 120 NKAACELELKNFRRCINDCKNALQLN-----PKN---VKCYFRMTRAFFALDKLEEAKE 170
                 78999999999999999999999888.....765...7788888888888888888866 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.8   9.4e+03      17      32 ..     119     134 ..     117     135 .. 0.80
   2 ?   11.4   0.1   0.00021      0.35       2      34 .]     138     170 ..     137     170 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.8
      TPR_17  17 nnLAelllknGdlmtA 32 
                  n+A + l++++++++
  CCD24188.1 119 ANKAACELELKNFRRC 134
                 6899999999998887 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00021
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 +++al+l+P+n++ y+ + +++  + +l++A++
  CCD24188.1 138 CKNALQLNPKNVKCYFRMTRAFFALDKLEEAKE 170
                 789***************999999999999985 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.35   5.6e+02      13      33 ..      88     108 ..      86     109 .. 0.86
   2 ?    6.5   0.1    0.0071        11       5      34 .]     119     148 ..     116     148 .. 0.88
   3 ?    6.8   0.0    0.0056       9.1       2      34 .]     150     182 ..     149     182 .. 0.86
   4 ?    0.5   0.5      0.58   9.4e+02       9      30 ..     205     226 ..     199     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.35
                 HTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyyekaleldpd 33 
                 k ++++ A  +y k ++++ +
  CCD24188.1  88 KAKRFKDARDVYLKGIQIENN 108
                 568999**********99876 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0071
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpdn 34 
                  n++ + l+l+++   +  ++ al+l+p+n
  CCD24188.1 119 ANKAACELELKNFRRCINDCKNALQLNPKN 148
                 577777899*******************97 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0056
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 + y+++ ++ + l ++eeAke+ e  l+ dp+n
  CCD24188.1 150 KCYFRMTRAFFALDKLEEAKESVEFGLKFDPEN 182
                 56888888999***********99999999875 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.58
                 HHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyyekalel 30 
                 +i+++++++e+ k  +e a+ l
  CCD24188.1 205 KILKEKKEKENLKIILENAIGL 226
                 6999*************99987 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       7.9   1.3e+04       5      20 ..      60      75 ..      57      82 .. 0.67
   2 ?    1.3   0.0      0.49     8e+02      11      30 ..      86     105 ..      82     115 .. 0.82
   3 ?    6.7   0.0    0.0096        16      11      43 ..     125     157 ..     116     158 .. 0.89
   4 ?    2.9   0.0      0.16   2.5e+02       4      35 ..     152     183 ..     149     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.9
      TPR_14  5 lalaeallalGdpdeA 20
                l++++al+  G+p e 
  CCD24188.1 60 LEALKALAYEGEPHEI 75
                5566677777777765 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.49
      TPR_14  11 llalGdpdeAiallrralal 30 
                 l+ + ++++A++++ + ++ 
  CCD24188.1  86 LYKAKRFKDARDVYLKGIQI 105
                 667899********999885 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0096
      TPR_14  11 llalGdpdeAiallrralalaPddaeawlllaq 43 
                 +l+l ++++ i+ ++ al+l+P++   ++++ +
  CCD24188.1 125 ELELKNFRRCINDCKNALQLNPKNVKCYFRMTR 157
                 57899********************99999987 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.16
      TPR_14   4 llalaeallalGdpdeAiallrralalaPdda 35 
                 + ++ +a++al++++eA +  +  l+ +P++ 
  CCD24188.1 152 YFRMTRAFFALDKLEEAKESVEFGLKFDPENT 183
                 667889*************9999999999875 PP

>> RAMPs  RAMP superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.4    0.0038       6.3      75     166 ..      46     222 ..      21     301 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0038
                 ............................HHHHHH--S...SS--SEEEEE................................................. CS
       RAMPs  75 d...........................leeaiFGneeeskiagrvffeDarpvkipgqileeskqikstpsp.......................... 120
                 +                            ++++F n+ +++  ++ +f Dar v  +g  +e +k++k+++s                           
  CCD24188.1  46 KlddtdgqggenlelealkalayegephEIAENFKNQ-GNDLYKAKRFKDARDVYLKGIQIENNKDVKIKESLfankaacelelknfrrcindcknalq 143
                 355555555555555555555556666678899*999.***************************************************9999999998 PP

                 .................................EEEEEEEEEEEEEEEEE--SSS-EEEEEE...-TT-EEEEEEEESS CS
       RAMPs 121 .................................klsgselrelldhsterrtrvaidrktktngkkkgglftleaipae 166
                                                  k   ++ + ++ h t++++++ i +   +  k+k+ + +l++i ++
  CCD24188.1 144 lnpknvkcyfrmtraffaldkleeakesvefglKFDPENTSLINLHDTIIKKELQIKENELKILKEKKEKENLKIILEN 222
                 8888888888888888888888888887777776666666666666666666666666555555533444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2605.56
//
Query:       CCD24189.1  [L=757]
Description: hypothetical protein NDAI_0C05300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-15   54.8   0.9    1.5e-14   53.7   0.9    1.7  1  INCENP_ARK-bind  Inner centromere protein, ARK binding region


Domain annotation for each model (and alignments):
>> INCENP_ARK-bind  Inner centromere protein, ARK binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.9   8.3e-19   1.5e-14       1      55 []     689     739 ..     689     739 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 8.3e-19
  INCENP_ARK-bind   1 dinsDdedddedeprkkipsWAqspeLrqaLikqepiDpdeiFGpikplnleeiF 55 
                      +i sD+e++d       + +WA+sp+L+q L +q+++Dp  iFGpi+pl+ +e+F
       CCD24189.1 689 EIFSDSEQEDTVT----LTDWAKSPYLQQTLLEQQNWDPRAIFGPIPPLHTDEVF 739
                      6788999888886....*************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2030  (0.113224); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 4841.19
//
Query:       CCD24190.1  [L=291]
Description: hypothetical protein NDAI_0C05310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00025   20.7   0.0    0.00042   20.0   0.0    1.4  1  ODAM      Odontogenic ameloblast-associated family
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.22   11.5   0.0    1.5  1  DUF371    Domain of unknown function (DUF371)


Domain annotation for each model (and alignments):
>> ODAM  Odontogenic ameloblast-associated family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   4.6e-08   0.00042     185     258 ..      90     165 ..      45     169 .. 0.92

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.6e-08
        ODAM 185 qlaldpllGtaPetavmpaeevipylqkevinfkhdnagifipstspkpsttnvfasavdp..titpelmEeKakt 258
                 q+++ + +Gt+P t +    +   +l k   +f h+++ if+ s    p+t n+ +s+ d   t+ +  + +K kt
  CCD24190.1  90 QFSFPNDQGTTPSTELENGRDSKRHLRKRSQDFTHQRGTIFRKSNGICPKTLNISTSGADIpkTVNSVSPLKKSKT 165
                 78888899**************************************************996568988888888887 PP

>> DUF371  Domain of unknown function (DUF371)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.4e-05      0.22      80     108 ..     120     148 ..      94     166 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.4e-05
                 -----SSEEEEESSS---TTEEEBS-S-- CS
      DUF371  80 ltlenerdlvvRkSdyvddrTllvkadka 108
                   ++++r  ++RkS+ ++++Tl ++++ a
  CCD24190.1 120 QDFTHQRGTIFRKSNGICPKTLNISTSGA 148
                 5799*******************987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       573  (0.0319594); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2088.06
//
Query:       CCD24191.1  [L=546]
Description: hypothetical protein NDAI_0C05320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.012   15.6   6.8       0.18   11.9   0.0    4.4  4  LRR_6     Leucine Rich repeat


Domain annotation for each model (and alignments):
>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.69   1.2e+04       7      15 ..     146     154 ..     145     155 .. 0.63
   2 ?   11.9   0.0     1e-05      0.18       3      24 .]     359     381 ..     357     381 .. 0.93
   3 ?    3.8   0.0    0.0041        73       4      20 ..     414     430 ..     413     434 .. 0.86
   4 ?    0.1   0.4     0.064   1.1e+03       4      17 ..     440     454 ..     439     454 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.69
       LRR_6   7 eLdLsgNdI 15 
                 +L+L++ +I
  CCD24191.1 146 SLNLNSLQI 154
                 577766665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1e-05
       LRR_6   3 thLteLdLsgNd.IgDeGaeaLa 24 
                 ++L++LdL+ ++ I+D G+ ++a
  CCD24191.1 359 PNLETLDLRACEnISDIGVVSIA 381
                 79******************997 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.0041
       LRR_6   4 hLteLdLsgNdIgDeGa 20 
                 ++++   +g++I+D+G+
  CCD24191.1 414 NVETIGFAGCNINDSGI 430
                 67888999*******96 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.064
       LRR_6   4 hLteLdLsgNd.IgD 17 
                 +++ L+L+ ++ ++D
  CCD24191.1 440 NIKRLSLNNCNqLTD 454
                 578999999998988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3809.88
//
Query:       CCD24192.1  [L=343]
Description: hypothetical protein NDAI_0C05330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-34  118.4   0.1    3.4e-34  118.0   0.1    1.1  1  adh_short        short chain dehydrogenase
    5.3e-20   72.0   0.0    7.2e-20   71.5   0.0    1.2  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    9.5e-07   28.9   0.0    2.2e-06   27.7   0.0    1.5  1  KR               KR domain
  ------ inclusion threshold ------
      0.011   14.9   0.3      0.016   14.4   0.3    1.2  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
       0.34   11.3   4.3        6.4    7.2   0.3    2.3  2  ATP-synt_F       ATP synthase (F/14-kDa) subunit


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.1   9.4e-38   3.4e-34       3     188 ..      65     258 ..      63     264 .. 0.94

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 9.4e-38
                 EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT.TSEEEEEE-TTT.SHHHHHHHHHHHHHHHSSESEEEE---S..S--SSGGGCS CS
   adh_short   3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee.gakalaiqvDvt.dreevealvekavkklgkldvLvnNAGi..tgsgpfsels 97 
                  +vtGas+GIG+++a ++a++G+++++++r+ +kle++++el ++ + +++++++D++ d+++  + ++++ ++l ++ vL+nN+G   + ++pf e++
  CCD24192.1  65 CVVTGASDGIGKEYAIQMAERGFNLILISRTLSKLETMKEELVKKySIEVVILAADISkDSDDNYKQIREVCENL-PITVLINNVGQshSIPVPFLETE 162
                 58******************************************99************77777777777776666.79*********98999******* PP

                 HHHHHHHHHHHTHHHHHHHHHHHHHHH.....HCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSHHHH CS
   adh_short  98 eeewervievNltgvflltravlpaml.....kqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvdTdmak 188
                 e+e +++i +N t+++l+t+ ++p ++     ++++G I +++S  g+ p + +a Ys sKa++++++ sla el+ +++ v  v   lv + m k
  CCD24192.1 163 ENELRNIITINNTATLLITQIIAPLIVktvrnSKQRGLILTMGSFGGLIPTPLLATYSGSKAFLQQWSTSLAGELKGDNVDVELVLSYLVTSSMSK 258
                 *************************99999999*****************************************************9999999876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0     2e-23   7.2e-20       1     183 [.      69     260 ..      69     284 .. 0.88

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 2e-23
                   TTTTSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSEE..EE--TTSHHH.HHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HH CS
  adh_short_C2   1 GaasgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgaev..lecDVtdeeq.vealveevvekfgklDilvnnagiapklkgpfletsre 93 
                   Ga  gIG++ A ++ae+G +++l  +  ++ +   eel+++++ ev  l++D++++++   + ++ev e++  + +l+nn+g ++++  pflet+++
    CCD24192.1  69 GASDGIGKEYAIQMAERGFNLILISRTLSKlETMKEELVKKYSIEVviLAADISKDSDdNYKQIREVCENL-PITVLINNVGQSHSIPVPFLETEEN 164
                   899***********************99998999999*****977447*****987542556666666665.799********************** PP

                   HHHHHHHHHTHHHHHHHHHHHHHCTSC.......CEEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGST CS
  adh_short_C2  94 efdraldvnlyslfllakaalplmkeg.......gsivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgik 183
                   e+++++ +n ++++l+++ ++pl+ ++       g i+++ s+g+ + +p  + y+ +Ka l++ + +lA el  +++ v  v   ++   +++ i+
    CCD24192.1 165 ELRNIITINNTATLLITQIIAPLIVKTvrnskqrGLILTMGSFGGLIPTPLLATYSGSKAFLQQWSTSLAGELKGDNVDVELVLSYLVTSSMSK-IR 260
                   **********************66554455678899************************************************9999876654.44 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   6.1e-10   2.2e-06       4     159 ..      66     229 ..      64     241 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 6.1e-10
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE----TT-HHH.HHHHHHHHHHHSS---EEEE------..---TTT CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevvaaDvsdkda.vealleeikaeeppikGvihaAgvlr..dkllee 99 
                 ++tG+  g+G+e a ++ae+g  +l+l+sR+ ++ e++k   + ++++ +ev ++aaD+s+ ++   + ++e+ ++  pi+  i+  g ++    ++ e
  CCD24192.1  66 VVTGASDGIGKEYAIQMAERGF-NLILISRTLSKLETMK--EELVKKYSIEVVILAADISKDSDdNYKQIREVCENL-PITVLINNVGQSHsiPVPFLE 160
                 79*******************6.79******65555555..44557789**********976541456677777555.888888887776622456777 PP

                 --HHHHHHHHTTTTHHHHHHHHHTTT.........S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHH CS
          KR 100 mtaedleqvlapKvkGawnLhelled.........esldffvlfSSiagllgsagqanYaaaNaflDal 159
                 +++++l++++    +++  + +++++         ++  +++++ S +gl+ ++  a+Y+   afl ++
  CCD24192.1 161 TEENELRNIITINNTATLLITQIIAPlivktvrnsKQRGLILTMGSFGGLIPTPLLATYSGSKAFLQQW 229
                 788888888888888888777777766666666656666777778888888888888888777777665 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.3   4.3e-06     0.016       2     115 ..      66     179 ..      65     193 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.3e-06
                      EEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT.....-HHHHHHHTT..T-SEEEE------. CS
  Polysacc_synt_2   2 lvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvr.....dkerlekaleelkvdvvfhaAAlKh. 89 
                      +vtGa+  iG+e   q++++   ++il++r+  kl ++++el ++++ +     +v + +d+      + +++++++e+l + v+++     h 
       CCD24192.1  66 VVTGASDGIGKEYAIQMAERGF-NLILISRTLSKLETMKEELVKKYSIE-----VVILAADISkdsddNYKQIREVCENLPITVLINNVGQSHs 153
                      79**************999887.58899*************96555543.....3344444431111146789999999999998888777666 PP

                      ..HHHHHHSHHHHHHHHHHHHHHHHHHH CS
  Polysacc_synt_2  90 ..VPlveenpleaiktNvlgtenvieaa 115
                        VP +e++  e    N++  +n+++  
       CCD24192.1 154 ipVPFLETEENE--LRNIITINNTATLL 179
                      555666554433..45666666655554 PP

>> ATP-synt_F  ATP synthase (F/14-kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.3    0.0018       6.4      23      76 ..      93     148 ..      62     155 .. 0.80
   2 ?    5.3   0.4    0.0071        25      28      65 ..     161     198 ..     154     206 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0018
                 CSSHHHHHHHHHHHHHHTTEEEEEEEHHHHCCCHHHHHHCTCS..SSSEEEEESCS CS
  ATP-synt_F  23 vtdeeeieealkelleredigiilitekiaeeirelideykee..alPaileIPsk 76 
                 + + +++e + +el+++ +i ++++  +i ++ +++ ++++e    lP+ + I + 
  CCD24192.1  93 SRTLSKLETMKEELVKKYSIEVVILAADISKDSDDNYKQIREVceNLPITVLINNV 148
                 6677889999999*********************9999999977799998888554 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0071
                 HHHHHHHHHHHHTTEEEEEEEHHHHCCCHHHHHHCTCS CS
  ATP-synt_F  28 eieealkelleredigiilitekiaeeirelideykee 65 
                 + e+ l+++++ ++ + +lit+ ia  i +++++ k++
  CCD24192.1 161 TEENELRNIITINNTATLLITQIIAPLIVKTVRNSKQR 198
                 568899999999*********************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2647.46
//
Query:       CCD24193.1  [L=300]
Description: hypothetical protein NDAI_0C05340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-74  249.0   0.0    5.5e-74  248.9   0.0    1.0  1  Pkinase        Protein kinase domain
    1.5e-32  113.0   0.0    1.8e-32  112.6   0.0    1.1  1  Pkinase_Tyr    Protein tyrosine kinase
    0.00016   21.1   0.0     0.0003   20.2   0.0    1.4  1  Kinase-like    Kinase-like
     0.0004   19.4   0.1     0.0019   17.2   0.1    1.9  1  Haspin_kinase  Haspin like kinase domain
      0.001   19.1   0.0      0.014   15.3   0.0    2.1  2  APH            Phosphotransferase enzyme family
      0.008   15.5   0.4      0.026   13.9   0.2    1.9  2  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.052   12.6   0.0      0.081   12.0   0.0    1.2  1  Seadorna_VP7   Seadornavirus VP7


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.9   0.0   2.1e-77   5.5e-74       1     264 []       8     293 ..       8     293 .. 0.92

  Alignments for each domain:
  == domain 1  score: 248.9 bits;  conditional E-value: 2.1e-77
                 EEEEEEEEEESSEEEEEEEETTT.TEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH...HHSS CS
     Pkinase   1 yekleklGeGsfGkVykaveket.gkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladlle...rkgs 94 
                 y++lek+GeG++G+Vyka++ ++ ++ivA+Kki+ e++++   ++++rEi++lk+lk +nivrly+++++  ++lylv+e+++ + l++++e   +++s
  CCD24193.1   8 YKRLEKVGEGTYGVVYKALDMRQgQRIVALKKIRLESEDEGVPSTAIREISLLKELKDDNIVRLYDIVHSdAHKLYLVFEFLDLD-LKRYMEsipKEQS 105
                 7899***************96651679*****************************************9846789********77.8888888889999 PP

                 --HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase  95 lseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyell 191
                 l ++ +kk+++q+++g++y+H+++i+HrDlKp+N+Li+++g+lK++DFGla+ +    + +t++++t +Y+APEvl ++++ys+ vD Ws+G+i++e+ 
  CCD24193.1 106 LGDNIIKKFMSQLCKGIAYCHAHRILHRDLKPQNLLINKEGNLKLADFGLARAFGVPLRaYTHEIVTLWYRAPEVLlGGKQYSTGVDTWSIGCIFAEMC 204
                 ******************************************************998778****************9********************** PP

                 HSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS......................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 192 tgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei......................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++kp+fs   g++    e+dq++ki++ilg +++  +p    +                      +++ +dll+kll++dp +R++a+ +++hpy+
  CCD24193.1 205 NRKPIFS---GDS----EIDQIFKIFRILGtPNETIWPDIVYLpdfktsfpqwrrkdlqqvvpslDPQGIDLLDKLLAYDPINRISARRAVAHPYF 293
                 *******...666....99**********964444555555558888889999999***************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.0   7.1e-36   1.8e-32       4     200 ..      11     205 ..       8     223 .. 0.89

  Alignments for each domain:
  == domain 1  score: 112.6 bits;  conditional E-value: 7.1e-36
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHT.CTT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkk.eke 98 
                   +k+GeG++G V+++      ++ +  Va+K+++ e+++e   +  ++e++++k+lk +niv+l+ ++  ++++l++v+e+++  dL+ ++++  +++
   CCD24193.1  11 LEKVGEGTYGVVYKALDM---RQGQRIVALKKIRLESEDEGvPSTAIREISLLKELKDDNIVRLYDIVHsDAHKLYLVFEFLDL-DLKRYMESIpKEQ 104
                  689************887...889999******86666555388999*********************978888********98.9*****9973466 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGvll 195
                  +l  + + +f+ q++kG++y ++++++Hrdl  +N L++++   k++DfGLar+       ++ +++ + + + apE+l  +k +++  D Ws G + 
   CCD24193.1 105 SLGDNIIKKFMSQLCKGIAYCHAHRILHRDLKPQNLLINKEGNLKLADFGLARAF--GVPLRAYTHEIVTLWYRAPEVLLGGKqYSTGVDTWSIGCIF 200
                  677777889**********************************************..66667778888999999****987666************** PP

                  HHHHT CS
  Pkinase_Tyr 196 wEift 200
                   E+++
   CCD24193.1 201 AEMCN 205
                  **997 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.2e-07    0.0003     144     265 ..     110     224 ..      77     233 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.2e-07
  Kinase-like 144 iarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve...kgfaPpEllgsrggytrknktkmthkldaWqlGl 238
                  i ++ +  ql + +a+ +a+ ++h +++++nll +++g l+l +f+  +  g   ++ + e     +  pE+l    g       +++ ++d+W +G 
   CCD24193.1 110 IIKKFM-SQLCKGIAYCHAHRILHRDLKPQNLLINKEGNLKLADFGLARAFGVPLRAYTHEivtLWYRAPEVLLG--G------KQYSTGVDTWSIGC 198
                  444455.6888999********************************99999988886333343366899999876..2......47999********5 PP

  Kinase-like 239 viyriwclklPltlateeakeewkfkl 265
                   i+   c   P+    +e+ + +k ++
   CCD24193.1 199 -IFAEMCNRKPIFSGDSEIDQIFKIFR 224
                  .88888999998888888877776655 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   7.3e-07    0.0019     173     258 ..      70     165 ..       4     188 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7.3e-07
  Haspin_kinase 173 kekpdfyseqqlflvlllkdkGtdLeev.....klksw..kqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle.... 257
                    +   d+++++ + l+l++++   dL++      k +s   + +++ + q  k ++    + +  HRdL+ +n L++k++n  l d+ l+R+     
     CCD24193.1  70 RL-YDIVHSDAHKLYLVFEFLDLDLKRYmesipKEQSLgdNIIKKFMSQLCKGIAYC-HAHRILHRDLKPQNLLINKEGNLKLADFGLARAFgvpl 163
                    22.477777778888888888888877654333222221122334444444444444.356778**************************965555 PP

  Haspin_kinase 258 .s 258
                     +
     CCD24193.1 164 rA 165
                    52 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.072   1.9e+02       6      70 ..      15      93 ..      10     128 .. 0.59
   2 !   15.3   0.0   5.5e-06     0.014     165     197 ..     127     157 ..     108     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.072
                --.SSCEEEEEEETT.--EE..EEEE-TTS-HHHHH....HHHHHHHHHHHTT-B--B-CTTBS-EEETTE.........E CS
         APH  6 sggasnrtylvttpa.gryv..lrrnpparaaeeir....revallrlLakagvpvPevlagdtddeeigl.........l 70
                + g++  +y+  + + g+ +  l+ ++ + ++e ++    re  ll+ L + ++   +++++  +d+++++         l
  CCD24193.1 15 GEGTYGVVYKALDMRqGQRIvaLKKIRLESEDEGVPstaiREISLLKELKDDNI--VRLYDIVHSDAHKLYlvfefldldL 93
                556666666666666554442344444443344333332366666777776666..5999988888888864433333333 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 5.5e-06
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 ++++lH+Dl+p+Nll++++++    + Df++a+
  CCD24193.1 127 AHRILHRDLKPQNLLINKEGNLK--LADFGLAR 157
                 679**************666666..89999887 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2     1e-05     0.026      57     166 ..      52     153 ..      25     173 .. 0.76
   2 ?   -3.5   0.0       2.1   5.4e+03     177     186 ..     249     258 ..     244     264 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
         Kdo  57 ravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwae...laeelkrallkavgrliaklhragvnHadlyaknillq 152
                 +a rE++llk+L++  +  ++ +           +  l+ e l+   dL+ ++++  +   l+++  ++ + ++ + ia  h+  + H+dl ++n+l++
  CCD24193.1  52 TAIREISLLKELKDDNIVRLYDIVHSDA-----HKLYLVFEFLD--LDLKRYMESIPKeqsLGDNIIKKFMSQLCKGIAYCHAHRILHRDLKPQNLLIN 143
                 5677777777777776665555443322.....23356777666..4777777765444579999999******************************* PP

         Kdo 153 qeeeeeaeiwliDl 166
                 +e+    ++ l D+
  CCD24193.1 144 KEG----NLKLADF 153
                 *99....6666666 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.1
         Kdo 177 rwrekdLarL 186
                 +wr kdL++ 
  CCD24193.1 249 QWRRKDLQQV 258
                 6899999886 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.2e-05     0.081     157     186 ..     125     152 ..      97     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.2e-05
  Seadorna_VP7 157 fhsestnllhGDcnpenlmcDknGylklvD 186
                    h   + +lh D +p+nl+ +k G+lkl D
    CCD24193.1 125 CH--AHRILHRDLKPQNLLINKEGNLKLAD 152
                   34..6789********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2409.00
//
Query:       CCD24194.1  [L=385]
Description: hypothetical protein NDAI_0C05350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-23   82.5   0.0    6.3e-23   81.2   0.0    1.7  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   3.5e-27   6.3e-23       1      92 [.      74     156 ..      74     162 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 3.5e-27
  Gly_transf_sug   1 perekkaieslakahpdyqvvvlskelekvrvaildlefllsdtpwfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlkslrnsig 92 
                     p++++++++++ + hpdy+++++++e++        +ef+ +++pwf+e++++++++i+++D++R+++L +yGG+Y+D+D  + ++l ++++
      CCD24194.1  74 PKQWIESQKKCKDLHPDYKYMLWTDEMS--------HEFIREEYPWFLETFENYKYPIERADAIRYFVLSHYGGVYIDLDDGCERRL-DPLL 156
                     7899************************........**************************************************9.8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2955.49
//
Query:       CCD24195.1  [L=465]
Description: hypothetical protein NDAI_0C05360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-91  304.3   1.1    5.1e-91  304.3   1.1    2.1  2  DUF2401   Putative TOS1-like glycosyl hydrolase (DUF2401)
    7.5e-30  103.2   0.2    2.5e-29  101.5   0.2    2.0  1  DUF2403   Glycine-rich protein domain (DUF2403)


Domain annotation for each model (and alignments):
>> DUF2401  Putative TOS1-like glycosyl hydrolase (DUF2401)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.12     1e+03      44      72 ..      56      84 ..      21     105 .. 0.72
   2 !  304.3   1.1   5.7e-95   5.1e-91       1     229 []     231     454 ..     231     454 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.12
     DUF2401 44 yassdgtsgassptvledvllssnkEiii 72
                 ++++ +++++++t ++++l + n+E+++
  CCD24195.1 56 NMDESTCQCSQQSTSFSGNLSPFNEELSV 84
                35566777888888888888888888877 PP

  == domain 2  score: 304.3 bits;  conditional E-value: 5.7e-95
     DUF2401   1 gswkrvayYnaesgtaenlvFlnnkggksgsGvfdsalgnslsyassdgtsgassptvledvllssnkEiiifsdkkCe..dkdCgyyregivayhGfg 97 
                 g+w+r +y+  ++g+++n++F+n++gg++gsG++++++gns+s+a+sdg++g ss+t l+dv+++s+kE+iifs+++C+  ++ Cgyyr+gi+ayhGfg
  CCD24195.1 231 GAWERASYF--TPGSTSNCTFMNHQGGTAGSGTWSQCFGNSISFANSDGITGCSSATPLDDVTVASGKEFIIFSGDSCDgsNDGCGYYRDGIPAYHGFG 327
                 58*******..9*******************************************************************9999**************** PP

     DUF2401  98 Gakkvflfefsmpedkksss.nkdmPAiWlLnakiprtaqYpgnaeCsCwksgCGelDifEvlesgseklkstlhtaqgaegggssdyfeRptdetikv 195
                 G++k+f+fef mp+d++ s+ n+dmPA+WlLnakiprt qY g+a+CsCw++gCGe+D+fE+l++gs+kl+s++h+ q   +gg++dyf+Rpt++++kv
  CCD24195.1 328 GDHKIFVFEFLMPSDTSGSAmNQDMPAVWLLNAKIPRTLQY-GDASCSCWETGCGEMDLFEILTAGSDKLISHVHDGQ---DGGTQDYFTRPTETSLKV 422
                 **************99987768*******************.79**********************************...89**************** PP

     DUF2401 196 avvfdseestvkivelddstdfdeslsaetvesl 229
                 av+f+++++t++ive+++  dfd+ ls++tv+s+
  CCD24195.1 423 AVIFNGNDNTIHIVEVSE--DFDDVLSEDTVNSW 454
                 ****************99..9***********99 PP

>> DUF2403  Glycine-rich protein domain (DUF2403)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.2   2.8e-33   2.5e-29       1      63 []      38     100 ..      38     100 .. 0.98

  Alignments for each domain:
  == domain 1  score: 101.5 bits;  conditional E-value: 2.8e-33
     DUF2403   1 daitytnvggsGsYkeVtsmdessgeCeteeksfsGplaPldeelSvhfRGPlkLkqfavYtp 63 
                 dai y+nvg s+sY++Vt+mdes+++C+++++sfsG+l+P++eelSvhfRGP++Lkqf+vY+p
  CCD24195.1  38 DAIIYSNVGLSSSYQDVTNMDESTCQCSQQSTSFSGNLSPFNEELSVHFRGPINLKQFGVYYP 100
                 589**********************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1108  (0.0617993); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.21s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3427.55
//
Query:       CCD24196.1  [L=66]
Description: hypothetical protein NDAI_0C05370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-14   54.0   0.5    1.4e-14   53.8   0.5    1.1  1  RAMP4     Ribosome associated membrane protein RAMP4


Domain annotation for each model (and alignments):
>> RAMP4  Ribosome associated membrane protein RAMP4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.5     8e-19   1.4e-14       2      58 ..       4      63 ..       3      65 .. 0.81

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 8e-19
       RAMP4  2 qkremrrknekfakni.tkrGkvpkslk..kkekkspvgpwlLglfiFVViGSaifqiir 58
                q++++r +nekf+kni ++r   +k+l+   ++++ p++ ++L++++F  iG+ ++++i+
  CCD24196.1  4 QTPKQRIANEKFNKNIeKHRKYGKKKLNknDEKSQLPISKVWLAVILFLLIGGGVLELIS 63
                89**************54444444444444666788***********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1084  (0.0604607); expected 358.6 (0.02)
Passed bias filter:                      545  (0.0303977); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 527.03
//
Query:       CCD24197.1  [L=570]
Description: hypothetical protein NDAI_0C05380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-61  208.8   0.5    2.5e-61  208.2   0.5    1.2  1  Exo5      Exonuclease V - a 5' deoxyribonuclease
    6.1e-05   23.2   0.1       0.15   12.1   0.0    2.6  2  Cas_Cas4  Domain of unknown function DUF83
    0.00083   19.3   1.0        1.1    9.2   0.0    3.1  2  PDDEXK_1  PD-(D/E)XK nuclease superfamily


Domain annotation for each model (and alignments):
>> Exo5  Exonuclease V - a 5' deoxyribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.2   0.5   4.1e-65   2.5e-61      10     368 .]     125     545 ..     120     545 .. 0.81

  Alignments for each domain:
  == domain 1  score: 208.2 bits;  conditional E-value: 4.1e-65
        Exo5  10 pkkklsVtdLvspaWCElqyeYtLtkl......grkkrtkamkrGskvHkklEeevhttvevevttkedkwglriwnviqgLrtLretGltRElevwGl 102
                 ++++lsVt+L++++WCEl+++Y+L+         + +r+k +++Gs++H++lE e+h +     ++ e ++ + +++++++  +  + G  RE+  +G+
  CCD24197.1 125 GTNRLSVTKLLTKSWCELRTTYDLYAEsrlkdiIQPPRDKYLESGSQIHNTLELELHPKLLDLGWELEPDLFDSWFDTLKKFVSIWKIGESREILTHGY 223
                 6799*********************9877777677899*******************988777799999****************************** PP

        Exo5 103 ..............vdge.....lvnGvIDelslenpdeeleeellesr.........kkksadvekkkaalseeqesikdylesss......kkkrki 167
                               v  +     l++G+ID+l+++ + ++++++   +r         +           ++ ++ ++i+ +le+ +      k++++i
  CCD24197.1 224 lnnetltlllgdqmV--RdendvLISGIIDHLKIRDKIRDKNKDSNAQRmdldldldlN-----------TMFKDCDNIDTVLETLEknfdtiKENKEI 309
                 666666666555552..044567*************99977777666554555543331...........3333333333333332233455578899* PP

        Exo5 168 yitDvKTrgskslps.ssqvrptkiQlmlYrrlLselaa.dkldiesvfery...dldpdepf............sdaflaqigkle...devfeelds 246
                 +i+DvKTr+++++p+  + +++tk+Q+m+Y+ +L++l     +++++++ +    ++dp++++            +  f ++++kl+   d +fe +ds
  CCD24197.1 310 LISDVKTRSTNKIPTqFTILKATKLQIMYYKFFLENLGIsVAATYHKLLTNAerrGIDPNTSIdpyklltfmistNGIFDDDMAKLRdgfDIGFELFDS 408
                 ***************778899****************95344444444433366699999999999999****96555666699999899999999999 PP

        Exo5 247 eaeseseee........eeveassssqdsl.......sellkyntLssllkl......lkkelaltflegasslsklltveYrsrkegevlgsksflvd 324
                 e + +s+++        +        q  +       +++ kyn++s+ ++       ++++la+ +  + +++s++l+veY++r  +e++++  f++d
  CCD24197.1 409 EFNMDSSTDmsnvfdmsH-------IQLDTealnippETIDKYNEFSTNWSRpvtlkyFAARLAQFYFYIGQLVSNQLSVEYYHR--NENFHNLLFNYD 498
                 988777666655543321.......222222456677999***********998866666*************************..9*********** PP

        Exo5 325 eetLkeylaeelawWrgeReaegVeieea.fk..CrsCeFaeeCeWr 368
                 ee L++ ++++ ++W+g+R++e+++++ + fk  C++C++a++C W+
  CCD24197.1 499 EEFLQTNVKDSGSFWFGKRDIEPIRPNVKnFKtfCKYCDYADVCAWK 545
                 **************************999899**************5 PP

>> Cas_Cas4  Domain of unknown function DUF83
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.5e-05      0.15      54     103 ..     297     353 ..     279     370 .. 0.80
   2 !    8.4   0.0   0.00036       2.2     141     161 ..     523     543 ..     461     544 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.5e-05
    Cas_Cas4  54 sikiDvvekekeklvvvEvKkskkk........eeaaklQllyYlllLekkgveikeG 103
                 + ++D+++ e++++ + +vK  +           +a klQ++yY ++Le+ g+++   
  CCD24197.1 297 EKNFDTIK-ENKEILISDVKTRSTNkiptqftiLKATKLQIMYYKFFLENLGISVAAT 353
                 56899999.9999999999965555589999988999****************99844 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00036
    Cas_Cas4 141 kppkvkkkkiCkkCayaelCl 161
                 +p +++ k +Ck C ya++C 
  CCD24197.1 523 RPNVKNFKTFCKYCDYADVCA 543
                 677778899***********5 PP

>> PDDEXK_1  PD-(D/E)XK nuclease superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.3    0.0012       7.3      87     180 ..     236     346 ..     128     368 .. 0.49
   2 !    9.2   0.0   0.00018       1.1     238     254 ..     521     542 ..     451     543 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0012
    PDDEXK_1  87 rylaeklkevleklverlaeeleakrg.....frpvalelefg...............gekvrLkGriDrvddkegelriiDyKtgsappkskela.el 164
                 +  +++   +++  +++l+  ++ +++      + + l+l+ +                   +L+  +D + ++++ + i D Kt s+++ +++ +   
  CCD24197.1 236 QMVRDENDVLISGIIDHLKIRDKIRDKnkdsnAQRMDLDLDLDlntmfkdcdnidtvlE---TLEKNFDTIKENKE-ILISDVKTRSTNKIPTQFTiLK 330
                 44444444445555555555555555544544333333332224466666665533221...37777888876666.9999***999998888877555 PP

    PDDEXK_1 165 keglQlllYllalaeg 180
                 ++ lQ + Y + l++ 
  CCD24197.1 331 ATKLQIMYYKFFLENL 346
                 6666999999888766 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00018
    PDDEXK_1 238 parpskk.....CeyCpyksvC 254
                 p+rp+ k     C+yC+y++vC
  CCD24197.1 521 PIRPNVKnfktfCKYCDYADVC 542
                 556665567889********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4334.26
//
Query:       CCD24198.1  [L=144]
Description: hypothetical protein NDAI_0C05390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-15   56.9   0.0    2.8e-15   56.3   0.0    1.3  1  Glutaredoxin  Glutaredoxin


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   1.6e-19   2.8e-15       1      60 []      45     112 ..      45     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 1.6e-19
                   EEEEES.....TSSHHHHHHHHHHHHTTGG...EEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin   1 vvlftk.....ptCpyCkkakrlLkelgvk...feeidvdkdeeireelkelsgvrtvPqvfidgkhv 60 
                   vvlf+k     p C+++++++ +L + g++   f+ ++v++d+e+re +ke++ ++t+Pq+f++ +++
    CCD24198.1  45 VVLFMKgtpefPKCGFSRATIGILGYEGIDpnkFKAFNVLDDAELREGIKEFTQWPTIPQLFVNKEFI 112
                   89**************************99999********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1169.95
//
Query:       CCD24199.1  [L=1838]
Description: hypothetical protein NDAI_0C05400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-95  320.3   0.0    3.2e-95  319.7   0.0    1.2  1  Amidase          Amidase
      2e-86  289.9   0.0    4.5e-86  288.8   0.0    1.6  1  CT_A_B           Carboxyltransferase domain, subdomain A and 
    6.1e-64  215.4   0.0    1.2e-63  214.5   0.0    1.3  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    5.5e-45  153.6   0.0    1.1e-44  152.6   0.0    1.4  1  CT_C_D           Carboxyltransferase domain, subdomain C and 
    5.6e-41  139.5   0.0    1.2e-40  138.5   0.0    1.6  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    1.6e-32  111.8   0.0    7.8e-32  109.6   0.0    2.2  2  Biotin_carb_C    Biotin carboxylase C-terminal domain
    4.9e-15   55.1   0.1    1.8e-14   53.3   0.1    2.0  1  Biotin_lipoyl    Biotin-requiring enzyme
    4.7e-13   49.1   0.0    1.1e-12   47.9   0.0    1.6  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    1.7e-06   27.7   0.0    3.2e-06   26.8   0.0    1.4  1  ATP-grasp        ATP-grasp domain
    2.8e-05   24.2   0.0    5.1e-05   23.4   0.0    1.4  1  ATP-grasp_3      ATP-grasp domain
  ------ inclusion threshold ------
       0.13   12.0   0.0       0.27   11.0   0.0    1.4  1  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
       0.18   11.3   0.0       0.43   10.0   0.0    1.6  1  ATP-grasp_5      ATP-grasp domain


Domain annotation for each model (and alignments):
>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  319.7   0.0   2.2e-98   3.2e-95      18     451 .]      47     446 ..      36     446 .. 0.91

  Alignments for each domain:
  == domain 1  score: 319.7 bits;  conditional E-value: 2.2e-98
                 --EEEEEHCCCCHHHHT---TTT......TTTT-EEEEETTB--TTSB--TTSGGGTT-B-SS--HHHHHHHHTT-EEEEEE--SGGG-SSSSTT-TT- CS
     Amidase  18 nalvtvfieealaqAakldkkrargkekgpLhGvPisvKDnidvkgvpttaGskalenypaekDatvverLkkaGavilgkTnmdefamgsstensvfg 116
                  a+v v++ e+ +++ ++ +   ++ke  pL+GvPi++KDnid kg+ptta++ ++ +  +e+D++vv++L++aGa+i+gkTn+d+fa g+ +  s +g
  CCD24199.1  47 PAWVSVCSIENFNHQWQILQTK-SNKELLPLYGVPIAIKDNIDAKGIPTTAACPSFSY-NPERDSKVVSLLRDAGAIIIGKTNLDQFATGLVGTRSPYG 143
                 5677778878888888887666.59******************************987.6677************************************ PP

                 --BBTTCTCCB--SSSHHHHHHHHTTSSSCEEEEESSSTTHHHHHHCTSEEEE--TTSC--TTB--SSTTT-EEEEEESSHHHHHHHHHHHBS--TT-T CS
     Amidase 117 ptrNPwdksrtpGGSSGGsAAavAaglvplaiGtDtGGSiRiPAsfcglvGlKPtygrvSragvvalessldvvGplarsvedlalllrvilgedpkds 215
                 +t + ++k++++GGSS GsA++vA+g+vp+a+GtDt+GS R+PA++++l+GlKPt+g++S++gvv+ ++sld+v ++a +++d+  +++ +++ d  ++
  CCD24199.1 144 KTPCVFNKDYVSGGSSAGSASVVARGIVPIALGTDTAGSGRVPAALNNLIGLKPTRGVLSCQGVVPACKSLDCVSIFALNLSDAERCFKILCQFDGDND 242
                 *********************************************************************************************998887 PP

                 TS----HHHHHHHHCTT---TT-EEEEEGGGCSS---CCHHHHHHHHHHHHHCTT-EEEEEE-CCGGGHHH.HHHHHHHHHHHHHTTT-SSSSS---SS CS
     Amidase 216 tssvipeesedlaeelkkslkglriGvvkedgvasldpevqravekalkaLeeaGhevvevelpsleeals.lyylilvaeassnlarylgvryerlse 313
                 + s +       +++l+k +k+l i+++k+ ++   + e+ +++ +a+++L+e+G++vv ++++ l e+++ ly   +vae  ++              
  CCD24199.1 243 EYSRLY-----PSNPLQKFPKNLTIAIPKTVPW-YGEIENPKLYSNAIASLKETGANVVTIDFEPLLELAKcLYEGPWVAERYNA-------------- 321
                 777744.....5799*****************6.99***********************************77777777777744.............. PP

                 -SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHHHHHHHHHHHHCCCBSEEEEESSSSS--BCCCCCHHHCSHHHHHGCCTTT... CS
     Amidase 314 tkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvrrllrrefakafeelDvllsPtaptpaprlgekdktidsytvlynlldftavv 412
                    ++++l+ + +++ ++ +  +i++g+  ++a +   ++++++k++  + ++++k+++++Dvl++Pt+p +++  +  +     +  l+n+ + t ++
  CCD24199.1 322 ---IRDFLATNPPNDTLDPIVMSIIKGATSFDAAD---AFKFEYKRQ-GILQKVNKLLKDIDVLCVPTCPLNPTFEEVTN-----EPILINSRQGT-WT 407
                 ...7899999******************9999995...666666665.79*********************998755443.....45667776666.77 PP

                 HHHHHTT--EEEEECCCCT.TECEEEEEEESTT-HHHHH CS
     Amidase 413 vpvnlaglpalsvpagksedglPvGvqvigkafqeetlL 451
                  +vnla+  al++p g+++dglP G+++ig++f + +lL
  CCD24199.1 408 NFVNLADMAALAIPTGFRNDGLPNGITLIGRKFTDYALL 446
                 ***********************************9997 PP

>> CT_A_B  Carboxyltransferase domain, subdomain A and B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.8   0.0     3e-89   4.5e-86       1     263 [.    1100    1380 ..    1100    1381 .. 0.96

  Alignments for each domain:
  == domain 1  score: 288.8 bits;  conditional E-value: 3e-89
                  GT----S-SSHHHHHHHHHHTTS-TTS-EEEEESC-EEEEESS-EEEEEEESCEEEEETTEEE-SSCEEEE-TT-EEEEEEESSECEEEEEETT-BE CS
      CT_A_B    1 lGvprsGamDrlalrlANrlvgNeegaaaLEitlggpelrfeedavvavtGadleatldgepvplwepvevkaGdvLklgaakaGlraYLavaGgld 97  
                  +Gvp+sG+mD ++++lANr+vgN+++aaaLEitl+gp++ f++++v+++tG+ +++ +++ep+++++p+++ +Gd+L++g++ +G+raYLa++Ggld
  CCD24199.1 1100 IGVPPSGPMDAYSFQLANRIVGNDSEAAALEITLTGPTVIFHTQTVISITGGICPCMVNDEPIEQNKPISISKGDELSIGRLITGCRAYLAIRGGLD 1196
                  6************************************************************************************************ PP

                  ---BTTB-S-BTTTTBSTTTTS---TT-EEEBSSSTT--S-C.........BGGCS---SSCSEEEEEEEE-TTG..CCB-HHHHHHHHHS-EEEEC CS
      CT_A_B   98 vpevlgSrStdllaglGgleGraLkagdvLplgeaaaaaaaka........keleaaapeeseeeevrvvpGpqa..dlfteealeallssewtvsa 184 
                  +pe+lgSrSt++l+ +Gg++Gr Lk gdvL +++ ++a++++         +++  +  ++++e+ + v+ Gp+   d+ft e  +++++++w++++
  CCD24199.1 1197 IPEYLGSRSTFTLGTIGGYNGRVLKLGDVLFINQFDSASSSQVskyhpqsvPSSLIPSISNDKEWLIGVMCGPHGspDFFTSEYADEFFNEKWKIHY 1293
                  **********************************999999888999999776666777788889999****************************** PP

                  EECSSEEEE..........ES.GG.SSCS.TEEEEEE--TTEEEE-CTTEEEEE-TTS-SEEEEEEEEEE-GGGHHHHTT--TTSEEEEE CS
      CT_A_B  185 esdRmGvrL..........dG.eaglerkesellsegvvlGaiqvppdgqpivllaDhqttGGYpkiatvisadldklaQlrpgdkvrFe 263 
                  +s+R GvrL          dG e gl++  s+ +++ ++lGai++ ++++p++++ D++++GG+++ ++v +a+l+k++Q++pgd+v+F 
  CCD24199.1 1294 NSNRFGVRLigprpkwarkDGgEGGLHP--SNAHDYVYSLGAINF-TGDEPVIVTCDGPSLGGFVCHGVVPEAELWKVGQVKPGDTVQFI 1380
                  *********9999999999777889999..89*************.*******************************************5 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.5   0.0   7.8e-67   1.2e-63       2     205 ..     744     946 ..     744     949 .. 0.98

  Alignments for each domain:
  == domain 1  score: 214.5 bits;  conditional E-value: 7.8e-67
                  HHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEE CS
  CPSase_L_D2   2 kesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvev 99 
                  k+sa++++++++vp+vp+s+  ++++ ea ++a+ + yPv++k+++g+GG G + ++ne++++ ++++ +++ k+ fg++ v++e+++++ +++Ev++
   CCD24199.1 744 KHSARNIAEAAHVPLVPGSSL-IKSATEAKEVAAALEYPVMVKSTAGGGGIGLQKVDNEADIERVFETVQHQGKSFFGDSGVFLERFIENARHVEVQL 840
                  67899**************99.9*************************************************************************** PP

                  EEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HHH CS
  CPSase_L_D2 100 lrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvk 197
                  + D +gn+i +++r++slq+r+qkvie+ P++ L d +  +lreaa ++ + ++++gagtvef++d++++e+y++EvNtRl+ve++++e++TGldlv+
   CCD24199.1 841 MGDGYGNAIALGDRDCSLQRRNQKVIEETPAPNLPDGTKFKLREAAENLGKLLKYKGAGTVEFIYDERRNEFYFLEVNTRLQVEHPITEMVTGLDLVE 938
                  ************************************************************************************************** PP

                  HHHHHHTT CS
  CPSase_L_D2 198 eaakialg 205
                  ++++ia+ 
   CCD24199.1 939 WMIRIAAD 946
                  ******85 PP

>> CT_C_D  Carboxyltransferase domain, subdomain C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.6   0.0   7.4e-48   1.1e-44       2     194 ..    1437    1653 ..    1436    1659 .. 0.98

  Alignments for each domain:
  == domain 1  score: 152.6 bits;  conditional E-value: 7.4e-48
                  EEEEETTTEEEEEE-.SS--HHHHHHHHHHHHHHHT..STTECEEEE-SSEEEEEESCCCCHHHHHH.HHHHHHHH...---------EEEEEEEES CS
      CT_C_D    2 rirplGdeallvefg.eeisealskrvlalaaalrakalpgvvelvpayrsllvefdpealdaaellaalkallee..aeeeaaeesrlveipvcYd 95  
                  ++r++Gd+++lve+g +++++++  r++ l + +++++  gvve+ +++rs+lvefdp++++++ell +l+a+++e   +++++ +s+++++p++++
  CCD24199.1 1437 TYRQAGDRYILVEYGeNKMELDICYRIHCLIKLVKKNNTMGVVEMSQGVRSVLVEFDPYKISQDELLYTLNAYEQEiyFTQDWTVKSNIIRLPMAFE 1533
                  789************888**********************************************************999****************** PP

                  TTT-T...................THHHHHHHHTS-HHHHHHHHHHS-EEEEEE-.SSTT-EEE----GG..G-----SS--S-B-TTEEEEETTEE CS
      CT_C_D   96 gevgp...................DLeevaelnglsveevirlhtaaeyrvaflG.fapGfaylggldpr..lavpRrasPrtrvpagsVgiageqt 170 
                  ++                      +++++a++ng+s e + +++++a+++v++lG ++ G +++ +ldpr  l  ++++++rt +++g+Vg++g+++
  CCD24199.1 1534 DSKILscvkryqesvrssapwlpnNVDFIADINGVSREYIHDMVYSARFMVLGLGdVFLGSPCAVPLDPRqrLLGSKYNPSRTFTERGAVGLGGMYM 1630
                  99999****************************************************************99999*********************** PP

                  EEE-S-B---SEEEEEE-S-SB-T CS
      CT_C_D  171 giyplesPGGWqliGrTplplfdp 194 
                  +iy+ +sPGG+ql+GrT +p++d+
  CCD24199.1 1631 CIYAAASPGGYQLVGRT-IPIWDK 1653
                  *****************.****97 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.0   7.8e-44   1.2e-40       2     110 .]     630     738 ..     629     738 .. 0.98

  Alignments for each domain:
  == domain 1  score: 138.5 bits;  conditional E-value: 7.8e-44
                    --EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHHH CS
  Biotin_carb_N   2 ikkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGflsEnaefaeavee 97 
                    +++vl+anrGeiAvri++++++++i++vavys+ d+ s+hv+ +d+av l++++a+e+Ylni+ki++aak sga+a+ pGyGflsEna+f+++++e
     CCD24199.1 630 FDTVLVANRGEIAVRIMKTLKKMKIKSVAVYSDLDKYSQHVTDSDDAVPLHGSTAAETYLNIDKIINAAKVSGAQAIIPGYGFLSENADFSDRCAE 725
                    678********************************************************************************************* PP

                    TT-EESSS-HHHH CS
  Biotin_carb_N  98 agivfiGPsaeal 110
                    +gi+f+GPs e++
     CCD24199.1 726 EGIIFVGPSGEII 738
                    *********9875 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.6   8.4e+03      57      97 ..     680     720 ..     677     723 .. 0.84
   2 !  109.6   0.0   5.2e-35   7.8e-32       1     106 [.     964    1067 ..     964    1068 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.6
                    EESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-HHHH CS
  Biotin_carb_C  57 hgetreealarlrraLaelrieGvktnieflrailedeefa 97 
                    hg+t +e   +++++++  +++G +  i+ +  + e+++f 
     CCD24199.1 680 HGSTAAETYLNIDKIINAAKVSGAQAIIPGYGFLSENADFS 720
                    8999999999999**********999998887777777775 PP

  == domain 2  score: 109.6 bits;  conditional E-value: 5.2e-35
                     EEEEESEETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-H CS
  Biotin_carb_C    1 eaRinaEdpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflrailede 94  
                     eaR++aE+p k+f ps+G++t +++p  +  Rvd++v++g+ vs++yD+ laKlivhg++r++a+++l +aL+e+++ G+ tni++l++i++++
     CCD24199.1  964 EARLYAENPVKGFKPSPGQLTDVSFP--EWARVDTWVTAGTVVSAEYDPTLAKLIVHGKDRNDAISKLIQALDETKLYGCVTNIDYLKSIVSSD 1055
                     89************************..99**************************************************************** PP

                     HHHHT---TTTC CS
  Biotin_carb_C   95 efakgeldtkfl 106 
                      f++++++t++l
     CCD24199.1 1056 MFKEARVSTNVL 1067
                     *********998 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.1   1.2e-17   1.8e-14      14      73 .]    1774    1834 ..    1768    1834 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 1.2e-17
                     E..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl   14 eg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73  
                     +g +++  v+vGd+V     l+++eamK em +++p +G++ +i++k+Gd+v++gdl+a+i
     CCD24199.1 1774 SGrFWKSAVSVGDEVDVSKGLIILEAMKTEMLVPSPYKGKLLKICHKNGDMVDSGDLVAVI 1834
                     357999****************************************************987 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   7.6e-16   1.1e-12       7     174 ..     750     919 ..     745     920 .. 0.81

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 7.6e-16
                      --B--EEEEETTHHCH-H-HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHH......HHHTT-SCEEEEE--.ESEEEEEEEEET CS
  Dala_Dala_lig_C   7 lpvvpyvvlekeeakeekkellekveeelgypvfVKpareGSSvGvskveseeelkeaie......eafkydekvlvEeai.egreievavlgn 93 
                      ++ +++v+l + ++  ++    ++v ++l ypv+VK+   G  +G++kv +e+++++ +e      ++f  d+ v+ E++i ++r +ev ++g+
       CCD24199.1 750 IAEAAHVPLVPGSSLIKSATEAKEVAAALEYPVMVKSTAGGGGIGLQKVDNEADIERVFEtvqhqgKSFFGDSGVFLERFIeNARHVEVQLMGD 843
                      555666666666666666677889********************************998822222235566999*******99*********** PP

                      SSCEEEEEEEEE-SSSSS-HHHHHC.TT-EEESS-.---HHHHHHHHHHHHHHHHHTT--SEEEEEEEE.ETTTEEEEEEEES CS
  Dala_Dala_lig_C  94 eklevsevgeivvkkgfydyeakysddkaqlevpa.klekeveekiqelalkaykaldlrGlaRvDffl.teegeivlnEvNt 174
                      +  ++  +g++  +    + ++k +      e pa +l++ ++ k++e+a +  k+l+ +G + v f++ ++ +e+++ EvNt
       CCD24199.1 844 GYGNAIALGDRDCSL--QRRNQKVI-----EETPApNLPDGTKFKLREAAENLGKLLKYKGAGTVEFIYdERRNEFYFLEVNT 919
                      **9999999987653..34455554.....34444379999999*************************66689********9 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.2e-09   3.2e-06       8     159 ..     759     920 ..     751     922 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.2e-09
                 B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-EEE-.-EEE CS
   ATP-grasp   8 vprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGetafy.pvve 97 
                 vp   +++s++e++e+a++l++pv+vK ++ g  G G + v +e+d+e+++e++        ++  v +E f++  + + v  + +  G+  ++ +   
  CCD24199.1 759 VPGSSLIKSATEAKEVAAALEYPVMVK-STAGGGGIGLQKVDNEADIERVFETVqhqgksffGDSGVFLERFIENARHVEVQLMGDGYGNAIALgDRDC 856
                 678899*********************.89999********************999999999999***********99999999999998665524455 PP

                 EEEETTEEEEEEECE.E-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCT.EEEEEEESS CS
   ATP-grasp  98 tvqedgilrlsvapa.evsekaqkkaeeiakkiveeLggvGvfavElFvledge.llvnElapR 159
                  +q+++  ++   pa ++++  + k +e a+++ + L + G  +vE+ + e  +  ++ E+  R
  CCD24199.1 857 SLQRRNQKVIEETPApNLPDGTKFKLREAAENLGKLLKYKGAGTVEFIYDERRNeFYFLEVNTR 920
                 566655555555554137888999**********************987755445777776655 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   3.4e-08   5.1e-05      16     159 ..     754     922 ..     744     924 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 3.4e-08
                  S---.............-EESS--.SSSEEEEESS-------B--SS--TTE...................EEEE---.SEEEEEEEEE.SSSEEEEE CS
  ATP-grasp_3  16 vkvP.........tkleaeeleee.ekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefie.GkplSvsllsdgekvlvla 90 
                  ++vP         + +ea+e++ + e+++ vK   G+gg +  +v+++ + e+ +e+v+             + +fie  +++ v+l++dg  + +  
   CCD24199.1 754 AHVPlvpgsslikSATEAKEVAAAlEYPVMVKSTAGGGGIGLQKVDNEADIERVFETVQhqgksffgdsgvFLERFIEnARHVEVQLMGDGYGNAIAL 851
                  55555557666655555555554469******************************9999**********98999**94689*******997765544 PP

                  EEEEE.EET....TEEEEEEES----HHHHHHHHHHHHHTTSTT--EEEEEEEEESS...SEEEEEEESS-- CS
  ATP-grasp_3  91 vnrql.iekaekefvyaGnvtpietelkeevvelaeevvekleglaGyvGvDlvlkd..eepyviEvNPRlt 159
                    r   +++++++++      + +   k +++e+ae++ + l + +G   v++++ +  +e y++EvN Rl+
   CCD24199.1 852 GDRDCsLQRRNQKVIEETPAPNLPDGTKFKLREAAENLGKLL-KYKGAGTVEFIYDErrNEFYFLEVNTRLQ 922
                  444431444444444444455556666899999999999999.99***9******99999**********97 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00018      0.27      49     120 ..     882     955 ..     876     965 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
  ATPgrasp_Ter  49 lielaerlaeefgldglvnvQvrededg..pkLLEiNpRasGGlgys.alaGvnlpylalklllgleteeveepe 120
                   l e+ae+l + ++ +g   v + +de +   + LE+N+R +    ++ +++G++l++++++ + + ++++ ++++
    CCD24199.1 882 LREAAENLGKLLKYKGAGTVEFIYDERRneFYFLEVNTRLQVEHPITeMVTGLDLVEWMIRIAAD-DPPDFASTN 955
                   5678888888888888888888777655469***********999983567***********999.666665555 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00029      0.43      12      54 ..     744     787 ..     738     802 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00029
  ATP-grasp_5  12 eaeakelleaygipvvet.rlassaeeaveaaeeigypvvlKiv 54 
                  ++ a+++ ea ++p+v+   l++sa+ea e+a++++ypv +K +
   CCD24199.1 744 KHSARNIAEAAHVPLVPGsSLIKSATEAKEVAAALEYPVMVKST 787
                  6899**********9886156********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1838 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.99u 0.29s 00:00:01.28 Elapsed: 00:00:00.47
# Mc/sec: 11790.33
//
Query:       CCD24200.1  [L=450]
Description: hypothetical protein NDAI_0C05410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.8e-100  335.4   3.7   3.3e-100  335.2   3.7    1.0  1  FTR1       Iron permease FTR1 family
     0.0047   16.8   0.3     0.0098   15.8   0.3    1.4  1  Amidase_5  Bacteriophage peptidoglycan hydrolase
  ------ inclusion threshold ------
      0.022   14.5   0.4      0.063   13.1   0.4    1.7  1  S_2TMBeta  SMODS-associating 2TM, beta-strand rich effector d
       0.73   10.0   2.7        2.4    8.3   0.1    2.8  3  DUF4229    Protein of unknown function (DUF4229)


Domain annotation for each model (and alignments):
>> FTR1  Iron permease FTR1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  335.2   3.7  7.3e-104  3.3e-100       1     306 []       8     390 ..       8     390 .. 0.96

  Alignments for each domain:
  == domain 1  score: 335.2 bits;  conditional E-value: 7.3e-104
        FTR1   1 lfaiflvvlregleaslivsvllallkq....................................................................tqr 31 
                 +f+if+++lre+le+ +i+s+ll+++kq                                                                    tq+
  CCD24200.1   8 SFQIFFIFLRESLEIFIIISILLTIVKQalsledaneetpflgsatttavpeqpsgtshavepdqnqinqlsveeeeelydfptaiqdidqetaitTQK 106
                 69****************************************************************999999999999999999998888888775444 PP

        FTR1  32 etdk......lqvwagialavllalaigqafasitaalqkdkalieeellegvlsliavvviswmilwmrrvgkklkeeveqklakavaei..knreka 122
                 +  +      lq+++g  l+++l+l+ig++f+ i++ l++d+++++e+++eg+ls++a+ +is m+l+++r + kl+ +++ kla+++++   k+  ++
  CCD24200.1 107 DNSRiysklkLQIITGGTLGLILCLIIGGGFIVIFYNLGSDIWSLSEHYYEGILSIVASSIISIMGLFFLR-MGKLRDKFRIKLASIIYSDkgKQMFRK 204
                 4433888888*************************************************************.*****************8755666788 PP

        FTR1 123 a.qkgekgsekwalfilsFlivlREGlEavLfvaaivaytvkrvsalilgvvlGaliavvlglliyrglvklslqsffilegflLllvaagLfsvg..t 218
                 + +  +k+ ek+a+fil+F+++lREGlEav+f+++i+++++  +++++l+++ ++li+ ++g++++ ++++lsl++++++++++L+l+a+gLfs+g  +
  CCD24200.1 205 NsENAVKFTEKYAFFILPFVTTLREGLEAVVFIGGIGIDQP--LTSIPLSMLSAVLISGIFGFFFFKYSSSLSLKICLVVTTCFLYLIASGLFSKGvwQ 301
                 88999************************************..9******************************************************* PP

        FTR1 219 lellekaeacngkdyiefkkskslskisllslllvaflavereg.leivlaliGwantgplg.livyaavwlvvlillgllliklgvrlp 306
                 lel++++++cng+d++e+++++++++is+ s+++v+++++e++g ++i++a++Gw+n++++g +i+y+++wl+++ +  +l+i+++++++
  CCD24200.1 302 LELQDYVNKCNGQDMSEVGNGPGSYDISK-SVWHVNCCNGEKDGgWMILTAIFGWTNSATYGsVISYILYWLGLIAVTNVLMIEEKMGYI 390
                 *****************************.********************************************************9985 PP

>> Amidase_5  Bacteriophage peptidoglycan hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   2.2e-06    0.0098      23      66 ..     320     362 ..     313     367 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.2e-06
   Amidase_5  23 rlGPnsydcsssvyfaliaaGalsaGsavntetlfdslikngyk 66 
                  +GP syd s sv++   + G  + G++  t  +f++ ++  y 
  CCD24200.1 320 GNGPGSYDISKSVWHVNCCNGEKDGGWMILT-AIFGWTNSATYG 362
                 58***************************99.579999988875 PP

>> S_2TMBeta  SMODS-associating 2TM, beta-strand rich effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   1.4e-05     0.063       2      55 ..     252     304 ..     250     314 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
   S_2TMBeta   2 allsvilsyllsavlslissllelllealsvigtaviflllyllfdkklWklkl 55 
                 ++ls++l+ ++  ++ +++ + +l l++  v++t  ++l+   lf+k +W+l+l
  CCD24200.1 252 SMLSAVLISGIFGFF-FFKYSSSLSLKICLVVTTCFLYLIASGLFSKGVWQLEL 304
                 445555555555555.444444477999999999*****************987 PP

>> DUF4229  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         3   1.4e+04      10      25 ..      22      37 ..      20      50 .. 0.66
   2 ?    0.3   0.1      0.17   7.6e+02      32      50 ..     155     173 ..     126     193 .. 0.60
   3 ?    8.3   0.1   0.00053       2.4       9      51 ..     230     269 ..     225     271 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3
     DUF4229 10 Lfvvltavillvarli 25
                +f+++ +++  v +++
  CCD24200.1 22 IFIIISILLTIVKQAL 37
                5666666666665554 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.17
     DUF4229  32 lvaallAlvvalplSmvll 50 
                  +  +l++v++ ++S++ l
  CCD24200.1 155 YYEGILSIVASSIISIMGL 173
                 4455677777777776533 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00053
     DUF4229   9 aLfvvltavillvarliglp.vpllvaallAlvvalplSmvllk 51 
                 +L +v+++  +++      p   + +++l A++++++ +++++k
  CCD24200.1 230 GLEAVVFIGGIGID----QPlTSIPLSMLSAVLISGIFGFFFFK 269
                 55555554444444....456677899****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3671.07
//
Query:       CCD24201.1  [L=453]
Description: hypothetical protein NDAI_0C05420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.6e-118  395.0  12.1   3.6e-118  394.5  12.1    1.1  1  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.5  12.1    2e-122  3.6e-118      44     323 ..     115     396 ..     100     398 .. 0.96

  Alignments for each domain:
  == domain 1  score: 394.5 bits;  conditional E-value: 2e-122
  Glyco_transf_15  44 vnrgrkPie.denenAtllalvrnselakilrsikkvekrFnkkfnYpyvfindepftekfkekieklveeadvefgeipkeewsyPefideek 136
                       +++ +P +    e+A++++l rns+l+++l +i++ve++Fn++++Y++vf+nd+pf+e+fk+ ++ lv+ +++++g+i +e+ws P +id++k
       CCD24201.1 115 SQNVFHPEDdGILERAAMVTLSRNSDLYDLLSAIHDVESHFNNRYHYDWVFLNDKPFSEEFKRLTTALVS-GNTKYGLIDEEQWSIPPWIDRNK 207
                      33666776656677********************************************************.*********************** PP

  Glyco_transf_15 137 aakareelad..iaygdsesyrhmcRyysGlfykhellkkydyYwRvePdiklycdieyDvfkymkdekkiygFtlslkeieetiktlWdstkk 228
                       +k+r+ + +  ++ygdse yrhmcRy+sG++++h+l+++ydyYwRv+ dik+ycdi+yD+fk+m+ ++k+ygF lsl e++eti+t W+++ +
       CCD24201.1 208 FEKERRAMEEngVPYGDSEVYRHMCRYQSGFIWRHPLVDEYDYYWRVDTDIKIYCDIQYDIFKFMRVNNKKYGFILSLEEYQETIPTFWQTVTN 301
                      ********999*********************************************************************************** PP

  Glyco_transf_15 229 flkenkefieeknslsflsdddqdtynlCeFwsnfeigdldffrseayekfFeylDskGgffYerWgdapvhsiavslllpkdkihffedigys 322
                      f+ke++++++e+n l+f+sdd+++t+n C+Fw+nfei++l+f+rs+ay+++F+ylD++Ggf+YerWgdapvhsi+++lll+k+++hff+ +g++
       CCD24201.1 302 FTKEYEHHVNENNLLDFVSDDGGKTFNGCHFWTNFEIASLKFYRSQAYRDYFDYLDHSGGFYYERWGDAPVHSIGAALLLDKSEVHFFDGLGFY 395
                      *********************************************************************************************9 PP

  Glyco_transf_15 323 h 323
                      h
       CCD24201.1 396 H 396
                      9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3352.28
//
Query:       CCD24202.1  [L=362]
Description: hypothetical protein NDAI_0C05430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-22   79.2   0.0    4.7e-22   78.9   0.0    1.1  1  Abhydrolase_1    alpha/beta hydrolase fold
    3.7e-18   67.0   0.0    4.4e-18   66.7   0.0    1.1  1  Abhydrolase_6    Alpha/beta hydrolase family
    2.6e-15   56.4   0.0    1.5e-14   53.9   0.0    2.0  1  Hydrolase_4      Serine aminopeptidase, S33
    1.2e-07   31.6   0.0    1.3e-07   31.4   0.0    1.2  1  LIDHydrolase     Lipid-droplet associated hydrolase
    4.3e-05   23.3   0.0    0.00039   20.2   0.0    2.3  3  PGAP1            PGAP1-like protein
     0.0013   18.4   0.0      0.002   17.8   0.0    1.3  1  Esterase         Putative esterase
     0.0014   18.7   0.0     0.0021   18.2   0.0    1.2  1  Thioesterase     Thioesterase domain
     0.0021   17.9   0.0      0.014   15.2   0.0    2.3  3  Abhydrolase_2    Phospholipase/Carboxylesterase
     0.0023   17.8   0.0     0.0039   17.1   0.0    1.3  1  Ser_hydrolase    Serine hydrolase
  ------ inclusion threshold ------
      0.017   14.1   0.0      0.027   13.4   0.0    1.3  1  Chlorophyllase2  Chlorophyllase enzyme
      0.094   12.6   0.0       0.26   11.1   0.0    1.7  2  Lipase_3         Lipase (class 3)


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.0   2.9e-25   4.7e-22       4     255 ..      93     347 ..      90     349 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 2.9e-25
                    EEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTS....SEEEEEETHHHHHHHHHHHHH. CS
  Abhydrolase_1   4 vilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgdd....kltlvGhSmGGmialayaaey. 94 
                    +++hGl+g ++ +    l + L+ ++  +++lDl+G+g+S+   +     y++++v  +++ i+d+l  +    +++lvGhSmG+ i+l+++ +  
     CCD24202.1  93 LFIHGLGGVLEQFEP--LLRLLDLNENKFLALDLPGFGKSDEYED-----YNMFDVISIIHTIVDRLIPErttsNIVLVGHSMGCYISLHLFYKSy 181
                    89*************..************************9996.....999************999873332588******************9 PP

                    .GGGEEEEEEESE.......CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHH..HHHHHCHH CS
  Abhydrolase_1  95 .perVkalvllga.......idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfps..sgsdnass 180
                       + k+lv+l++       ++  +   ++ ++ + s+p+ fd y++++ + ++  +++ +  +++ + +  +     +k++++++  ++ ++ s 
     CCD24202.1 182 tRFSFKKLVFLSPpkpqldqLEKTNRKMQWLLRGILSLPWLFDFYRQWFDQSKGLSSSGIKRFFYHDNEEQDH----ILKYRKLWQfhNNVQIKSR 273
                    9999************9777666666778999************************************99988....55777777776689999** PP

                    HHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCH.HHHHHHHHC..HTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 181 latgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvpp.kaledlaql..lpkkrlvvisdagHlafle 255
                    +  g l+ +e+++++d + lll+  e    +  ++v+ g++Dp++p  k+  ++ +     +krl+ i+ + H+++++
     CCD24202.1 274 SILGYLLGWEPINWEDIRELLLEKSE----NTEIVVLTGMEDPVTPLdKVRLYFSSFgdVVHKRLIEIPECSHNLCFD 347
                    ***********************888....8899*************6666666655564449***********9987 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   2.7e-21   4.4e-18       2     216 ..      93     351 ..      92     355 .. 0.67

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 2.7e-21
                    EEE--GC.....GCHHHHHHHHCCT...CEEEEE--TTST.S-GGCS--HHHCHHH.HHHHCCTT....TTSEEEEEETCHHHHHHHHHHCC.... CS
  Abhydrolase_6   2 lllHGagssassWlvapLaallaag...vhvlapDlpGhG.rsdpppldledladl.aalldelaa..gggpvvlvGHSlGGalalaaapla.... 86 
                    l++HG+g+  +++   pL++ll      +  la+DlpG+G +++  +++  d+  + + ++d+l+    + ++vlvGHS+G++++l+   l     
     CCD24202.1  93 LFIHGLGGVLEQFE--PLLRLLDLNenkF--LALDLPGFGkSDEYEDYNMFDVISIiHTIVDRLIPerTTSNIVLVGHSMGCYISLH---LFyksy 181
                    8******9888886..6655555555559..*********555666666666777788899999866666667**************...445556 PP

                    ....EE..EEES-..----TTT.S----TTHHHHHHTT-C.....CCCH.CCH......S-HSCCCCHHH...C....CCCHCHCCCGHHHHCCHH CS
  Abhydrolase_6  87 ..lvvg..vlldppptalpagl.laaalelllallallrl.....lawl.sre......plprlfladed...a....daawrarlarlaallagl 158
                      + ++  v+l+pp ++l+ ++  ++ +++ll+ + +l+       +w+ +           r f++d++        +  w+       ++++ l
     CCD24202.1 182 trFSFKklVFLSPPKPQLDQLEkTNRKMQWLLRGILSLPWlfdfyRQWFdQ-SkglsssGIKRFFYHDNEeqdHilkyRKLWQFHNNVQIKSRSIL 276
                    58444467*****55555555588888888888888555544445577751.24466654444777766655414444666666666666666644 PP

                    C...HTTCCHHTT-TTGC.........EEE.CTT-CHHHHCHHCCCH.......STTEEETCE...SSS-HHHHSHHH CS
  Abhydrolase_6 159 g...llpaaawadlpvpl.........lvl.ggeDplvprllerlla.......qagarlpvvlpgaGHlphleepde 216
                    g    + + +w+d++++l         +vl g eDp+ p  l++          + ++rl +++p ++H + ++ p +
     CCD24202.1 277 GyllGWEPINWEDIRELLleksenteiVVLtGMEDPVTP--LDKVRLyfssfgdVVHKRL-IEIPECSHNLCFDLPLK 351
                    433356699*********8888888864556899**777..4444443444445666777.********655556655 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0     9e-18   1.5e-14       7     237 ..      92     347 ..      86     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 9e-18
  Hydrolase_4   7 vvlvHGlaehsgryaelaeaLaaqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyl.lrypd.kva 102
                   +++HGl+   ++++ l + L  ++ +++alD  G+G+s+       ++ d++  ++++v+++  e  +++++l+GhSmG +i+l+++ + y + +++
   CCD24202.1  92 YLFIHGLGGVLEQFEPLLRLLDLNENKFLALDLPGFGKSDEYED--YNMFDVISIIHTIVDRLIPERTTSNIVLVGHSMGCYISLHLFyKSYTRfSFK 187
                  5799***********************************75555..688999************************************7666667888 PP

  Hydrolase_4 103 glilsaPalkikaklkappllklllkllgkllpklqv..............snnlkadslsrdpevva.ayeadplvhgkitvrlllelldamkrlee 185
                  +l++ +P  k++ +  + +  + +++ll  +l    +              s++  +++  +d+e+++  ++  +l++++  v++    + +    +e
   CCD24202.1 188 KLVFLSPP-KPQLDQ-LEKTNRKMQWLLRGILSLPWLfdfyrqwfdqskglSSSGIKRFFYHDNEEQDhILKYRKLWQFHNNVQIKSRSILGYLLGWE 283
                  *******9.566553.8888888888887776665557899999999999966666666666666666366777777777666666555555544444 PP

  Hydrolase_4 186 raakit...........lPllllhGeaDkvvdpeasrelyerlgsk.dktlklypglyHellnE 237
                    +  +           + + +l G +D+v++ ++ r ++ + g   +k+l  +p++ H l ++
   CCD24202.1 284 PINWEDirellleksenTEIVVLTGMEDPVTPLDKVRLYFSSFGDVvHKRLIEIPECSHNLCFD 347
                  4332222355677778899*************************989*************9988 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   8.1e-11   1.3e-07       3     155 ..      90     231 ..      88     345 .. 0.71

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 8.1e-11
  LIDHydrolase   3 ilivlipGNPGlveFYetFlsllseklnpelevlgishaGfeleeeekeakenekvfsLedQiehkedflkellekaksekdvklilvGHSvGaYia 99 
                   +l ++i G  G+ e +e+ l+ll  +   e + l+  + Gf +++e        + +++ d i     +++ l++   +++ ++++lvGHS G+Yi+
    CCD24202.1  90 PLYLFIHGLGGVLEQFEPLLRLLDLN---ENKFLALDLPGFGKSDEY-------EDYNMFDVISIIHTIVDRLIP---ERTTSNIVLVGHSMGCYIS 173
                   56677777778888888888888888...667777888888877777.......88999999************9...679**************** PP

  LIDHydrolase 100 levlkrlsers.ikkvvlLfPtiediakSpn.gkkltkllaylpflalvvglllrvlk 155
                   l++  +  +r  +kk+v+L P   ++ + ++ ++k++ ll  +  l  ++ ++ ++++
    CCD24202.1 174 LHLFYKSYTRFsFKKLVFLSPPKPQLDQLEKtNRKMQWLLRGILSLPWLFDFYRQWFD 231
                   ***99777766699*****986555544332145555556666666666666666664 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.2   5.1e+03     188     220 ..      42      76 ..      25      78 .. 0.57
   2 ?   -0.3   0.0      0.44   7.1e+02       8      21 ..      93     106 ..      89     120 .. 0.87
   3 !   20.2   0.0   2.4e-07   0.00039      75     129 ..     144     196 ..     133     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.2
       PGAP1 188 lvpstnglsvattsip..kvwlsidhlaivwckql 220
                 +v++++ l   t+ i   + + ++d ++i  c+++
  CCD24202.1  42 IVSPESMLDFSTKFIHkySSFEKVDGKSIRVCRNF 76 
                 44444444444444431145677888888888876 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.44
       PGAP1   8 lFvpGnagsykqvr 21 
                 lF++G++g ++q  
  CCD24202.1  93 LFIHGLGGVLEQFE 106
                 8*******999976 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 2.4e-07
       PGAP1  75 aIkyIlslysssekeptsviliGHSmGGivaraaltlknyikqsvntiltlasPh 129
                 +I++I +     e+ +++++l+GHSmG  ++ + l++k+y   s ++++ l+ P 
  CCD24202.1 144 IIHTIVDRL-IPERTTSNIVLVGHSMGCYIS-LHLFYKSYTRFSFKKLVFLSPPK 196
                 577777666.57788899*************.8999***************9985 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.2e-06     0.002     105     142 ..     148     186 ..     117     240 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.2e-06
                 HHHHHCSEECCC.EEEEEETHHHHHHHHHHHCSTTTCCE CS
    Esterase 105 lldanfrtapdg.ravaGqSmGGlgALilalkhpdrFgs 142
                 ++d   + ++++  +++G+SmG +++L+l  k+++rF++
  CCD24202.1 148 IVDRLIPERTTSnIVLVGHSMGCYISLHLFYKSYTRFSF 186
                 444444445555689********************9965 PP

>> Thioesterase  Thioesterase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.3e-06    0.0021       3      81 ..      91     174 ..      89     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.3e-06
                   EEEE.--TTCCSGGGHHHHHHCTTCEEEEEEECSTTST.SHHHCTTCHHHHHHHHHHHHHHH-SSS...SEEEEEETHHHHHHH CS
  Thioesterase   3 Lflf.ppagGsasvfrslasklsdpvvevlavqlpgre.rdepplesieelaaeyaealrqiqpeg...PyalfGhSlGgllAf 81 
                   L+lf ++ gG  ++f  l + l+ +  ++la+ lpg++ +de +  ++ ++++ + +++ +  pe      +l+GhS+G+++  
    CCD24202.1  91 LYLFiHGLGGVLEQFEPLLRLLDLNENKFLALDLPGFGkSDEYEDYNMFDVISIIHTIVDRLIPERttsNIVLVGHSMGCYISL 174
                   5665266666899**********999************9888888888888888777777777776333789********9975 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.83   1.3e+03      13      24 ..      88      99 ..      82     107 .. 0.82
   2 !   15.2   0.0   8.7e-06     0.014      87     129 ..     142     183 ..     123     210 .. 0.78
   3 ?   -2.7   0.0       2.6   4.2e+03      40      57 ..     298     315 ..     292     324 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.83
                   --EEEEEE--TT CS
  Abhydrolase_2 13 aqavviflHGlG 24
                   ++++ +f+HGlG
     CCD24202.1 88 NEPLYLFIHGLG 99
                   567789*****9 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 8.7e-06
                    HHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHT-SS- CS
  Abhydrolase_2  87 aekleelidaelkkgipssriiigGFSqGaalalylaltlpkk 129
                    ++ ++ ++d  + + ++ s+i+++G S+G+ ++l+l +++ ++
     CCD24202.1 142 ISIIHTIVDRLIPE-RTTSNIVLVGHSMGCYISLHLFYKSYTR 183
                    44455555555544.78899*****************998765 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.6
                    -TTEEEEEE---EEE-GG CS
  Abhydrolase_2  40 lpnikfifphgpelpvtl 57 
                    ++n++++++ g e+pvt 
     CCD24202.1 298 SENTEIVVLTGMEDPVTP 315
                    567788888888888775 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.4e-06    0.0039      52      97 ..     156     201 ..     146     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.4e-06
                    C-STTEEEEEETCHHHHHHHHHH.HTTSSSEEEEEEET--SGGS..T CS
  Ser_hydrolase  52 aaeekvvlvAHSlgclavlhaae.lqlakkvagalLVapadveeeaa 97 
                    ++++++vlv HS+gc ++lh+     ++   ++ ++ +p++++   +
     CCD24202.1 156 RTTSNIVLVGHSMGCYISLHLFYkSYTRFSFKKLVFLSPPKPQ-LDQ 201
                    56789***************998678888999********995.333 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.7e-05     0.027      18     127 ..      90     195 ..      85     216 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.7e-05
  Chlorophyllase2  18 pvllflhGylllnslYsqlLkhiashgfivvapqlykvaeadakeiksaakvlnWlakgLesvlpeevepdlsklalsgHSrGgktafalalgk 111
                      p+ lf+hG+    + ++ lL+ +       +a  l  + ++d  e  ++  v+  +++ +++ +pe  +   s+++l+gHS G++++++l  ++
       CCD24202.1  90 PLYLFIHGLGGVLEQFEPLLRLLDLNENKFLALDLPGFGKSDEYEDYNMFDVISIIHTIVDRLIPERTT---SNIVLVGHSMGCYISLHLFYKS 180
                      666777777766666777776655555555555666665566655555667777777777777777765...6789**************9988 PP

  Chlorophyllase2 112 aktslkfsaligvdPv 127
                       + + +f+ l+++ P 
       CCD24202.1 181 YT-RFSFKKLVFLSPP 195
                      87.89*******9995 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00016      0.26      49      78 ..     143     172 ..     111     188 .. 0.88
   2 ?   -2.6   0.0       2.8   4.5e+03      53      69 ..     288     305 ..     260     308 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHHTT-EEEEEEEETHHHHH CS
    Lipase_3  49 eqvlkelkrllekypeysivvtGHSLGgal 78 
                 + +++ ++rl+ +  + +iv++GHS+G  +
  CCD24202.1 143 SIIHTIVDRLIPERTTSNIVLVGHSMGCYI 172
                 56788999*******************755 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.8
                 HHHHH.HHHHTT-EEEEE CS
    Lipase_3  53 kelkr.llekypeysivv 69 
                 +++++ llek ++++ivv
  CCD24202.1 288 EDIRElLLEKSENTEIVV 305
                 567775788888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2719.47
//
Query:       CCD24203.1  [L=941]
Description: hypothetical protein NDAI_0C05440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00027   20.7   0.0    0.00057   19.7   0.0    1.6  1  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.048   13.6   0.0       0.13   12.2   0.0    1.7  1  F-box       F-box domain


Domain annotation for each model (and alignments):
>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   6.4e-08   0.00057       1      47 [.     187     233 ..     187     234 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.4e-08
  F-box-like   1 isrLPdEiLlqIFsyLpps..dLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 i+ LP Ei+ +I s ++++  + + +  V+++++++a     L+ ++++
  CCD24203.1 187 INELPVEIITHIISNINDNqiSVVKCLYVSKKFYEAAK-V-VLYENPFF 233
                 578************9544489***************3.4.89999886 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.4e-05      0.13       2      37 ..     186     223 ..     185     226 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.4e-05
                 HHHHS-HHHHHHHHHTS-HHH..HHHHCTT-HHHHHHH CS
       F-box   2 tlsrLPsevlrhILerLplsd..llalrrVSkgwrili 37 
                 t+ +LP e++ hI+++ +     ++ +  VSk+++ + 
  CCD24203.1 186 TINELPVEIITHIISNINDNQisVVKCLYVSKKFYEAA 223
                 7899************99999*************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1716  (0.0957109); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6429.09
//
Query:       CCD24204.1  [L=887]
Description: hypothetical protein NDAI_0C05450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.7e-103  342.4   0.0   1.2e-102  341.7   0.0    1.2  1  MCM              MCM P-loop domain
    3.6e-30  104.4   0.3    6.3e-30  103.6   0.3    1.4  1  MCM_OB           MCM OB domain
      4e-21   75.2   1.0      1e-20   73.9   1.0    1.8  1  MCM_lid          MCM AAA-lid domain
    8.3e-17   61.7   2.1    8.3e-17   61.7   2.1    2.1  1  MCM_N            MCM N-terminal domain
    1.5e-07   31.0   0.0    1.7e-05   24.3   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    7.9e-07   29.1   0.0    9.9e-06   25.6   0.0    2.8  3  AAA_5            AAA domain (dynein-related subfamily)
    0.00047   20.7   1.6    0.00095   19.8   0.1    2.2  2  Mg_chelatase_C   Magnesium chelatase, subunit ChlI C-terminal
     0.0084   15.9   0.0       0.02   14.8   0.0    1.6  1  AAA_lid_2        AAA lid domain
  ------ inclusion threshold ------
      0.061   13.2   0.0       0.19   11.6   0.0    1.9  1  AAA_3            ATPase family associated with various cellul
      0.079   12.7   0.0        0.7    9.6   0.0    2.1  2  Sigma54_activat  Sigma-54 interaction domain
       0.15   12.4   0.2        3.9    7.8   0.0    2.9  2  AAA_16           AAA ATPase domain


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.7   0.0  7.5e-106  1.2e-102       4     222 ..     399     617 ..     396     619 .. 0.98

  Alignments for each domain:
  == domain 1  score: 341.7 bits;  conditional E-value: 7.5e-106
                 HHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSEEE CS
         MCM   4 eikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaavv 102
                 ++ +l +e d++++l+ksiap+iyg+ dvkka+ll+l+ggv+k++ d++k+rgdinv+l+gdpg+aKsqlLk+++k++pr+vyt+gkgss++gLtaav+
  CCD24204.1 399 RVMDLISEGDVYNRLAKSIAPEIYGNLDVKKALLLLLVGGVDKRVGDGMKIRGDINVCLMGDPGVAKSQLLKSICKISPRGVYTTGKGSSGVGLTAAVM 497
                 677888999****************************************************************************************** PP

                 EESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSSEE CS
         MCM 103 rdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFDli 201
                 +d+ t+e++le+Galvlad+G+cciDefdkm+e+dr+a+hE+mEqqtisi+KaGi++tLnar+s+laAanp +gry+++ s  eninl+aalLsrFD++
  CCD24204.1 498 KDPVTDEMILEGGALVLADNGICCIDEFDKMDESDRTAIHEVMEQQTISISKAGINTTLNARASILAAANPLYGRYNPRLSPLENINLPAALLSRFDIL 596
                 *************************************************************************************************** PP

                 EEE-SSTTHHHHHHHHHHHHH CS
         MCM 202 fvllDkvdeekDeelaehivs 222
                 f+llD++++++De+la+h+  
  CCD24204.1 597 FLLLDTPNRDNDEKLAHHVAF 617
                 ******************975 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.3   3.9e-33   6.3e-30       2     123 ..     226     355 ..     225     358 .. 0.90

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 3.9e-33
                 XGG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEES---....-S.B-..TTT-...HHH-EEE-GGGSEEEEEEEEEEE--------- CS
      MCM_OB   2 lRdlrsehigklvkveGivtrasevkpklkkavfeckkcgktvevelee....Pr.kCeekeCe...skdpfkletekskfvdfqklklQEspeevpaG 92 
                 +R+++ + +g+l +v+Gi+tr+s+vkp +  ++++c++cg++v  e+++    P  +C++keC+   +k+++ ++t+ skf  fq+ k+QE +++vp+G
  CCD24204.1 226 VREIKGDFLGQLLTVRGIITRVSDVKPAVLVIAYTCDQCGYEVFQEVTSrtftPLtECTSKECSqnqTKGQLFMSTRASKFSAFQECKIQELSQQVPVG 324
                 89**************************************98876555455556449******95444459999************************* PP

                 ----EEEEEEEGGGTT---TT-EEEEEEEEE CS
      MCM_OB  93 elPrslevileddlvdkvkPGdrvevtGiyr 123
                 ++Prsl++++++ lv++++PGd v+v Gi+ 
  CCD24204.1 325 HIPRSLTIHVNGGLVRSMTPGDIVDVSGIFL 355
                 *****************************96 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   1.0   6.4e-24     1e-20       3      86 ..     637     722 ..     635     723 .. 0.93

  Alignments for each domain:
  == domain 1  score: 73.9 bits;  conditional E-value: 6.4e-24
                 HHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHH...TSSTSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHHHH CS
     MCM_lid   3 lrkYiayarekikPklseeakeklseaYvelRkee...edskrksipitvRqLesliRLseAlAklrlsevvteedveeairllkes 86 
                 +r+Yia+a+   +P+++e+++e++ +aY++lR+++   +dsk +  ++t+R+L  +iRLs+AlAklrl + v+ +dveea+rl++ s
  CCD24204.1 637 MREYIAVAK-SKRPVMNETVNEYMIQAYIRLRQDSkreMDSKFSFGQATPRTLLGIIRLSQALAKLRLADSVDVDDVEEALRLIRVS 722
                 89*******.***********************99665445788899************************************9876 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   2.1   5.1e-20   8.3e-17       3     104 .]      20     203 ..      18     203 .. 0.88

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 5.1e-20
       MCM_N   3 kFedFLeefk..............ddsededge........kkYrdqlqemaerekttLevdlddLaafde..........eLaeailenpkeylplle 69 
                  ++dFL++fk              d++e    +        +kY++ lq++ +re ++++v+ldd+ ++++          +L+++i+en +++++l++
  CCD24204.1  20 DINDFLSHFKtdvfaetteqqqdhDMDE----DehdeigkgPKYMNILQRISNRELDSITVELDDILQYQNekfleggsngDLVNSIQENANHFIELFC 114
                 689***********99998876652222....134558888****************************88899999********************** PP

       MCM_N  70 ealkevvkklep..sykdd...................................................a.kefpaeltrrfqvrfkn 104
                 + ++++++  ++  +ykdd                                                   + + fpa+ltrr+  +fk+
  CCD24204.1 115 RTIDDLMPLPTKeiDYKDDvldvilnqrqlrnermvsdrttelrnenlmdmangeppssmnetlrevaedEtELFPANLTRRYFFYFKP 203
                 *******666655599999****************************************999999988752699*********999985 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.016        26      20      48 ..     450     478 ..     440     484 .. 0.89
   2 !   24.3   0.0     1e-08   1.7e-05      97     158 ..     507     568 ..     495     576 .. 0.94

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.016
  Mg_chelatase  20 aGgHnlllvGppGsGKtmlakrlpsllpp 48 
                    G  n+ l+G pG  K+ l k + ++ p+
    CCD24204.1 450 RGDINVCLMGDPGVAKSQLLKSICKISPR 478
                   58889*****************9999875 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 1e-08
  Mg_chelatase  97 pkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNp 158
                    + G++ la nG+  +DE+ +++++   ++ e +e+++++is+a  +++  ar  ++aa+Np
    CCD24204.1 507 LEGGALVLADNGICCIDEFDKMDESDRTAIHEVMEQQTISISKAGINTTLNARASILAAANP 568
                   56799********************************************************9 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.8   2.9e+03      37      63 ..     140     166 ..     137     177 .. 0.83
   2 ?   -1.6   0.0       1.6   2.5e+03      41      74 ..     317     353 ..     310     366 .. 0.76
   3 !   25.6   0.0   6.1e-09   9.9e-06       1     129 [.     454     575 ..     454     593 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.8
                 -HHHHH--B--.........------- CS
       AAA_5  37 teedlkgrreikngttslvdsplvraa 63 
                 ++++l+ +r ++++tt+l++  l++ a
  CCD24204.1 140 NQRQLRNERMVSDRTTELRNENLMDMA 166
                 578999999999999999999999655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.6
                 HH--B--............--------G-SEEEEESG CS
       AAA_5  41 lkgrreik...ngttslvdsplvraaregeilvlDEv 74 
                 l +++ +     + t +v++ lvr+++ g+i+ + ++
  CCD24204.1 317 LSQQVPVGhipRSLTIHVNGGLVRSMTPGDIVDVSGI 353
                 555555555556678899***********99866666 PP

  == domain 3  score: 25.6 bits;  conditional E-value: 6.1e-09
                 EEEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT..--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal.nreveyvqltrd..tteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlll 96 
                 +v+L G+pG++Ks+l +++++   +  +++  ++++  +t++ +k ++    ++  l+ ++lv       i+++DE+++++ +   + + ++e++++++
  CCD24204.1 454 NVCLMGDPGVAKSQLLKSICKISpRGVYTTGKGSSGvgLTAAVMKDPVT---DEMILEGGALV--LADNGICCIDEFDKMDESDRTAIHEVMEQQTISI 547
                 69*********************87777777777752245555665555...78889999999..77889***********99999************9 PP

                 .-SSSEEE---......-EEEEEESS--.-TT- CS
       AAA_5  97 eeggelvkaknddllerfrviatanpldrslne 129
                  + g  +  ++       +++a+anpl+++ n+
  CCD24204.1 548 SKAGINTTLNAR-----ASILAAANPLYGRYNP 575
                 999988888775.....89*******9933333 PP

>> Mg_chelatase_C  Magnesium chelatase, subunit ChlI C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       6.5   1.1e+04      35      59 ..     523     547 ..     521     550 .. 0.83
   2 !   19.8   0.1   5.9e-07   0.00095      25      91 ..     645     717 ..     631     718 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6.5
  Mg_chelatase_C  35 revceldeeaeelleeaierlglsa 59 
                     +e+ ++de++++ ++e++e++++s 
      CCD24204.1 523 DEFDKMDESDRTAIHEVMEQQTISI 547
                     5667899999999999999999985 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 5.9e-07
  Mg_chelatase_C  25 e......naelsgeelrevceldeeaeelleeaierlglsaRaydrilkvArTiADLegseeieeehlaeAlq 91 
                     +      n+++++ +++++++l++++++ +++ ++ ++ + R +  i+++++ +A L+ +++++ ++++eAl+
      CCD24204.1 645 KskrpvmNETVNEYMIQAYIRLRQDSKREMDSKFSFGQATPRTLLGIIRLSQALAKLRLADSVDVDDVEEALR 717
                     03445669***************************************************************97 PP

>> AAA_lid_2  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.2e-05      0.02      10      50 ..     679     719 ..     671     736 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.2e-05
   AAA_lid_2  10 elgvsgrRadlallraArAlAalegrdyVtpeDvkeaaplV 50 
                 ++g  + R  l ++r ++AlA l+ +d V  +Dv+ea +l+
  CCD24204.1 679 SFGQATPRTLLGIIRLSQALAKLRLADSVDVDDVEEALRLI 719
                 5666666799***************************9985 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00012      0.19       3     113 ..     456     569 ..     454     593 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
       AAA_3   3 llegvPGlaktllvkalakaldlefkriqftpdll.PsdilGtevfeekekefefkkGpvf...anllladeinrappktqsalleameerqvtvege. 96 
                  l g PG+ak +l k+++k+     + +  t        ++ + + +  + e+ ++ G+++   + +   de ++     ++a+ e+me+++++++++ 
  CCD24204.1 456 CLMGDPGVAKSQLLKSICKISP---RGVYTTGKGSsGVGLTAAVMKDPVTDEMILEGGALVladNGICCIDEFDKMDESDRTAIHEVMEQQTISISKAg 551
                 5677888888888887776543...334444332202344555555566678888888765222348899**********************9987652 PP

       AAA_3  97 .thklpepflvlatqnPi 113
                  +++l+    +la+ nP+
  CCD24204.1 552 iNTTLNARASILAAANPL 569
                 26889************7 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.39   6.3e+02      20      48 ..     450     478 ..     441     482 .. 0.86
   2 ?    9.6   0.0   0.00043       0.7      86     142 ..     509     567 ..     502     571 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.39
                      TSSS-EEEECSTTSSHHHHHHHHHHHSTT CS
  Sigma54_activat  20 ktdlsvlitGesGtGKellaraiheaskr 48 
                      + d++v ++G+ G+ K+ l ++i + s+r
       CCD24204.1 450 RGDINVCLMGDPGVAKSQLLKSICKISPR 478
                      56799*************99999887766 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00043
                      EHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEE..ESBTSSSEEE--EEEEEEES CS
  Sigma54_activat  86 kGlfekadgGtlfLDeigelplelQekLlrvlqegev..ervGsskeikvdvriiaatn 142
                       G++  ad+G+  +De  +++ +  + + +v++++++  ++ G +++ ++   i+aa+n
       CCD24204.1 509 GGALVLADNGICCIDEFDKMDESDRTAIHEVMEQQTIsiSKAGINTTLNARASILAAAN 567
                      49999****************************997522799********999999987 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0024       3.9      26      59 ..     454     485 ..     442     508 .. 0.83
   2 ?    0.7   0.0      0.36   5.9e+02     138     161 ..     519     542 ..     511     551 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0024
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgk 59 
                 +v l G++Gv Ks l++++   ++ + g++++gk
  CCD24204.1 454 NVCLMGDPGVAKSQLLKSIC-KISPR-GVYTTGK 485
                 6789****************.68888.4555555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.36
      AAA_16 138 vlvlDdlqwadeaslqllaaLlrl 161
                 + ++D++++ de++++++ + ++ 
  CCD24204.1 519 ICCIDEFDKMDESDRTAIHEVMEQ 542
                 568************998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 6110.44
//
Query:       CCD24205.1  [L=210]
Description: hypothetical protein NDAI_0C05460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-41  141.2  12.1    4.1e-41  141.0  12.1    1.0  1  DER1             Der1-like family
  ------ inclusion threshold ------
      0.042   13.6   0.4      0.085   12.6   0.4    1.4  1  Antimicrobial12  Pleurocidin family


Domain annotation for each model (and alignments):
>> DER1  Der1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0  12.1   4.6e-45   4.1e-41       1     191 []      12     202 ..      12     202 .. 0.94

  Alignments for each domain:
  == domain 1  score: 141.0 bits;  conditional E-value: 4.6e-45
        DER1   1 iPavTRllltatvvltllgrlelispaklvlsyelvvkkvQiwRlltsllyfsstgfsflinlyfiyqysskLEegsfrgrsadyvylllflavlitll 99 
                 iP+vT++++++++ l++l++ ++i+p+k++++y+lv+kk Q+ R+++s++ ++++++ +++n++++++++++LE++ f+ + + y++ l++ + li+++
  CCD24205.1  12 IPLVTKIWTLGSIGLSILTSTRMIDPTKVIYNYDLVFKKGQYERIFYSIFNYGEFNWVSMLNIFISANHLTMLENS-FELK-RRYCWTLFLILSLIVMM 108
                 8**************************************************************************9.9998.89***998887777766 PP

        DER1 100 glla.dlvvLgqalilaivYvwskknk.dvqvsFfgvlrvkakylPlvllafsfllge.svvvsligilvghiyyfledkypiklnGkdllktPq 191
                 +  +   ++Lg  l++++vY++ k+n+ +++ + +g++++ a+ +P++++++++++++ s+++  +++l++h ++++ d+ ++kl+ +d+++tP+
  CCD24205.1 109 SGIIqPSSSLGILLHENLVYYEIKRNTnEMNFRLLGGINIAASLIPVYMNGMMYFVYNrSLFEISMNFLPAHFIFYF-DDVIQKLYDIDIFQTPY 202
                 65342459******************978*****************************8999***************.77888999********6 PP

>> Antimicrobial12  Pleurocidin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   9.5e-06     0.085       3      16 ..      95     108 ..      94     110 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.5e-06
                      XXXXXXXXXXXXXX CS
  Antimicrobial12   3 laalFLVLsLVVLM 16 
                      + +lFL+LsL+V+M
       CCD24205.1  95 CWTLFLILSLIVMM 108
                      889*********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1744.93
//
Query:       CCD24206.1  [L=583]
Description: hypothetical protein NDAI_0C05470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-25   87.1   0.0    2.5e-13   49.4   0.0    2.7  2  SH3_1     SH3 domain
    3.6e-15   55.6   0.1    5.3e-11   42.2   0.0    2.7  2  SH3_9     Variant SH3 domain
    6.1e-15   55.2   0.1      2e-14   53.5   0.0    1.9  2  PX        PX domain
    5.4e-10   38.8   0.0    3.3e-09   36.3   0.0    2.3  2  SH3_2     Variant SH3 domain
     0.0018   18.2   0.1     0.0044   16.9   0.1    1.7  1  PB1       PB1 domain
  ------ inclusion threshold ------
        2.1    8.5   5.0       0.64   10.2   0.4    2.5  3  ARD       ARD/ARD' family


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   8.4e-17   2.5e-13       1      48 []      85     131 ..      85     131 .. 0.94
   2 !   35.1   0.0   2.5e-12   7.5e-09       1      48 []     178     226 ..     178     226 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.4 bits;  conditional E-value: 8.4e-17
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 +A+Y+Y  +++ ELsf kG+ + v++ ++d+W+++ + +tgk+G++P+
  CCD24206.1  85 KAIYNYHSQTPKELSFVKGEFFYVIN-ENDEWYEASNPSTGKQGMVPK 131
                 7*************************.6666****************5 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 2.5e-12
                 EESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTS.TEEEEEEG CS
       SH3_1   1 iAlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgt.gkeGliPs 48 
                 i+lYD++ae+sdEL+   G+ ++++++++ +W+ ++ +g+ g  Gl+P+
  CCD24206.1 178 IVLYDFKAEKSDELTAFVGENLFICAHHNFEWFIAKPIGRlGGPGLVPV 226
                 68***************************************99*****5 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   1.8e-14   5.3e-11       1      47 [.      86     133 ..      86     135 .. 0.96
   2 !   10.8   0.0   0.00012      0.35       1      48 [.     179     229 ..     179     230 .. 0.92

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 1.8e-14
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsl..tGrtGlvPany 47 
                 A+y+y  + + eLs+ +G++++vi+e +d W+e+s+  tG+ G vP++y
  CCD24206.1  86 AIYNYHSQTPKELSFVKGEFFYVINE-NDEWYEASNpsTGKQGMVPKSY 133
                 89****9*******************.********999**********9 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00012
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegs...ltGrtGlvPanyv 48 
                 +ly++++ + deL   +G+ +++   ++  W+ ++   + G  GlvP+ +v
  CCD24206.1 179 VLYDFKAEKSDELTAFVGENLFICAHHNFEWFIAKpigRLGGPGLVPVGFV 229
                 89*********************9889*******9877799999**98776 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         3     9e+03      13      37 ..      11      36 ..       7      47 .. 0.67
   2 !   53.5   0.0   6.8e-18     2e-14      14     105 ..     325     425 ..     313     431 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3
                EETTSSEEEEEEEEEETTS.SSEEEE CS
          PX 13 tsgskkhsyylyevelktg.akewtv 37
                 s+++k++++   +++ t+ +++++v
  CCD24206.1 11 DSHGSKGRLTSADISTPTQtQENSNV 36
                45788888888888888887444433 PP

  == domain 2  score: 53.5 bits;  conditional E-value: 6.8e-18
                 ETTSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHT..............TSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSC CS
          PX  14 sgskkhsyylyevelktgakewtvkRrYsdFeeLhskLlrkfp..............rvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhp 98 
                   +++++++++++ l +g k++++kR Y+dF++L+  Ll+ fp              ++++P++P++v++++     e +++krr++L++y++ l++ p
  CCD24206.1 325 GLEDEKYWFAVNCDLDNG-KSRKLKRYYEDFYDLQVSLLDSFPaesgklrdsngqwtKRILPYIPGPVPYVT-----EMITKKRREDLNVYVTDLVKLP 417
                 36899************9.**************************************************999.....9********************* PP

                 HHHH.SHH CS
          PX  99 elrn.sev 105
                  +++ s+ 
  CCD24206.1 418 AYIShSPL 425
                 **996655 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   1.1e-12   3.3e-09       2      56 ..      84     136 ..      83     137 .. 0.95
   2 ?   -0.5   0.0      0.35     1e+03       2      55 ..     177     230 ..     176     232 .. 0.63

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 1.1e-12
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGEEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslvee 56 
                 ++ai +y ++ + eLsf kG++++v+     ++d+w+e+++   G++G +P s+ ee
  CCD24206.1  84 IKAIYNYHSQTPKELSFVKGEFFYVI----NENDEWYEASNpsTGKQGMVPKSYFEE 136
                 79************************....9***********99*******999776 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.35
                 EEESS-B-SCGCCB--B-TTEEEEEE..EEEECTTE.EEEEE.CCCE...EEEEGCGEE CS
       SH3_2   2 vraiedyvgedkseLsfkkGdvikvlslgskdsdgw.wegev.gGrv...GlfPsslve 55 
                 ++++ d+++e+ +eL+  +G+ + +        +++ w+ ++  Gr    Gl+P  +v+
  CCD24206.1 177 AIVLYDFKAEKSDELTAFVGENLFIC-----AHHNFeWFIAKpIGRLggpGLVPVGFVS 230
                 66777788888888877777733333.....3578888888775554444888877766 PP

>> PB1  PB1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   1.5e-06    0.0044       2      54 ..     511     562 ..     510     574 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.5e-06
                 EEEEEEETTEEEEEEEEGSSS-HHHHHHHHHHHHTSTCCSEEEEEEETTSSEE CS
         PB1   2 vdlKlrygggirrelsvssnisfeeLrakvekrfklsdedvklkYpdedgdlV 54 
                 +++K++y+++i   l ++++i+f eL ++++ r+  +++++ +k++  dg+++
  CCD24206.1 511 TKIKFYYKDDIFA-LMLNKDITFAELHDRIAPRIDTEKFKLCVKLEEGDGEEI 562
                 78***********.**********************88888888888888766 PP

>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.4   0.00021      0.64      20     114 ..      26     116 ..      10     147 .. 0.67
   2 ?   -1.7   0.1      0.95   2.8e+03      29      60 ..     249     281 ..     239     302 .. 0.51
   3 ?   -3.7   0.0       3.9   1.2e+04     123     133 ..     412     422 ..     406     423 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
         ARD  20 spkekaeelelaklgvlrwkldaddeeeaeeeekilktkeeekkdidvevlkestpnfdeklekFfeEhlhedeeirliveGtgyFdvrskdeaw 114
                 +p    +++e+++++  ++ ++  +  + +   k ++ +++++++   ++ + +    d+ ++  ++ h+++ +e+++ v+G+ +++++++de +
  CCD24206.1  26 TP---TQTQENSNVIKHMKTVPVRYLSSSDGIGKNQQQQQQQTTNSYHNRHSSNVSSPDKAIKAIYNYHSQTPKELSF-VKGEFFYVINENDEWY 116
                 33...34444444444444444554444554445455555555555333445556667889***************96.79**999998888766 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.95
         ARD  29 elaklg.vlrwkldaddeeeaeeeekilktkee 60 
                 +  +l  v+ wk+++ + ++ + +  +++ k++
  CCD24206.1 249 KSVNLPtVQEWKANIAKYKASNINLGTVEQKQQ 281
                 444444455555555544444333333333322 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.9
         ARD 123 DLivlPagiyh 133
                 DL+ lPa i+h
  CCD24206.1 412 DLVKLPAYISH 422
                 9********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4122.04
//
Query:       CCD24207.1  [L=499]
Description: hypothetical protein NDAI_0C05480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.6e-107  357.5  13.5   8.7e-107  357.1  13.5    1.1  1  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.1  13.5  4.8e-111  8.7e-107      45     325 .]     155     448 ..     116     448 .. 0.90

  Alignments for each domain:
  == domain 1  score: 357.1 bits;  conditional E-value: 4.8e-111
  Glyco_transf_15  45 nrgrkPiedene.....nAtllalvrnselakilrsikkvekrFnkkfnYpyvfindepftekfkekieklveead.vefgeipkeewsyPefi 132
                        + +P +   e     nAt+l+lv+n++l+++l si+++e++Fnkkf Ypyvf+nd +f+e+fk +i +++ ++  v+fg+i ke w++P+ i
       CCD24207.1 155 DYLIRPDD---ElagsaNATILSLVTNNDLKELLPSIQQLEEKFNKKFGYPYVFLNDGEFSEEFKDTIINMLPNGRvVKFGQIEKEDWDMPDTI 245
                      23445533...234456*********************************************************9659**************** PP

  Glyco_transf_15 133 deekaakareelad..iaygdsesyrhmcRyysGlfykhellkkydyYwRvePdiklycdieyDvfkymkdekkiygFtlslkeieetiktlWd 224
                      d+e+ + + e++ +  + y ++esy++mcR+ys  fy+h+ll++y+y wR+eP+  lycd++yDvfk+m+ e+k+yg++l+l++ +++i+tlW+
       CCD24207.1 246 DRERYKIECEKMDKlkVSYVKKESYHNMCRFYSRKFYHHPLLQEYKYTWRLEPGTSLYCDVDYDVFKFMEMENKVYGYVLNLYDGANSIPTLWE 339
                      ***99998888877779***************************************************************************** PP

  Glyco_transf_15 225 stkkflkenkefieeknslsflsdddqd........tynlCeFwsnfeigdldffrseayekfFeylDskGgffYerWgdapvhsiavslllpk 310
                      +t++f+k+n+++++ ++++++l+++ q+        +y++C+Fw+nfei++ldf+rseayek+ ++l+++ gf+YerWgdapv+sia++l+l+k
       CCD24207.1 340 TTMEFVKKNPNYLNPNGAFDWLKENAQKpenfetakGYSTCHFWTNFEITNLDFLRSEAYEKYMDHLENSNGFYYERWGDAPVRSIALALFLDK 433
                      **********************999998999****9********************************************************** PP

  Glyco_transf_15 311 dkihffedigyshdp 325
                      ++ih+f+di+y+h+p
       CCD24207.1 434 SRIHWFRDIAYNHNP 448
                      *************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1155  (0.0644208); expected 358.6 (0.02)
Passed bias filter:                      728  (0.0406046); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3787.18
//
Query:       CCD24208.1  [L=859]
Description: hypothetical protein NDAI_0C05490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-49  163.5  21.2    1.7e-09   38.1   0.4    6.7  6  WD40           WD domain, G-beta repeat
    3.8e-40  137.1   2.2    6.7e-40  136.3   2.2    1.4  1  TFIID_NTD2     WD40 associated region in TFIID subunit, NTD2 
    3.6e-12   46.4   0.1       0.81   10.0   0.0    6.2  6  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    4.2e-06   26.3   0.0       0.34   10.2   0.0    3.5  3  WD40_like      WD40-like domain
    7.9e-06   25.6   1.4      1e-05   25.3   0.1    2.0  2  LisH           LisH
      6e-05   21.9   2.0      0.072   11.7   0.1    3.4  2  Nup160         Nucleoporin Nup120/160
    0.00039   19.5   0.0       0.51    9.2   0.0    3.8  3  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
  ------ inclusion threshold ------
      0.017   15.0   0.0        8.1    6.4   0.0    3.5  3  nos_propeller  Nitrous oxide reductase propeller repeat
      0.022   13.3   0.2       0.17   10.4   0.0    2.1  2  Cytochrom_D1   Cytochrome D1 heme domain
       0.07   13.1   0.1         18    5.4   0.0    3.3  2  PD40           WD40-like Beta Propeller Repeat
      0.081   11.2   0.0       0.67    8.2   0.0    2.0  2  Frtz           WD repeat-containing and planar cell polarity 
        6.4    6.6  25.5        3.7    7.4   9.0    2.3  2  SPX            SPX domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   2.9e-05     0.043       3      38 .]     511     547 ..     509     547 .. 0.75
   2 !   34.3   0.1   1.9e-11   2.8e-08       5      38 .]     580     614 ..     577     614 .. 0.91
   3 !   28.7   0.4   1.1e-09   1.6e-06       4      38 .]     621     656 ..     618     656 .. 0.90
   4 !   38.1   0.4   1.1e-12   1.7e-09       3      38 .]     662     698 ..     660     698 .. 0.96
   5 !   29.6   0.3   5.6e-10   8.3e-07       3      38 .]     704     740 ..     702     740 .. 0.84
   6 !   29.2   0.0   7.4e-10   1.1e-06       4      38 .]     747     783 ..     744     783 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.9e-05
                 EEEEEESS.SS..EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ss..vtslafspdgawlasGsdDgtvriWd 38 
                 cl+t   H ++   tsl+fs d+++ a G  D  +++W+
  CCD24208.1 511 CLYT--FHnTNrdMTSLDFSEDSRLAAGGFQDSYIKLWS 547
                 5555..56422479***********764459*******5 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 1.9e-11
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +tl GH + v+s +fspd+++l+sGs+D+tvr+W+
  CCD24208.1 580 TTLIGHsGAVYSTSFSPDNKYLISGSEDKTVRLWS 614
                 5899**555*************************5 PP

  == domain 3  score: 28.7 bits;  conditional E-value: 1.1e-09
                 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 l +++GH++ v++++fsp g+++a++s D+t r+W+
  CCD24208.1 621 LVSYKGHNHpVWDVKFSPLGHYFATASHDQTARLWS 656
                 6789***666***************999*******5 PP

  == domain 4  score: 38.1 bits;  conditional E-value: 1.1e-12
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +lr++ GH s+v +++f+p+g ++++Gs D+t+r+Wd
  CCD24208.1 662 PLRIFAGHlSDVDCVSFHPNGCYVFTGSSDKTCRMWD 698
                 799************************99*******9 PP

  == domain 5  score: 29.6 bits;  conditional E-value: 5.6e-10
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  +r + GH  +v s a+spdg+wl++Gs+Dg + +Wd
  CCD24208.1 704 SVRLFLGHtAPVISTAVSPDGRWLSTGSEDGIINVWD 740
                 567788**888645555*******************9 PP

  == domain 6  score: 29.2 bits;  conditional E-value: 7.4e-10
                 EEEEESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH..ssvtslafspdgawlasGsdDgtvriWd 38 
                 l+  +GH  + ++sl++s++g+ l+s++ D++vr+Wd
  CCD24208.1 747 LKLMRGHgkNAIYSLSYSKEGNVLVSSGADHSVRVWD 783
                 66679**9555**************9989*******9 PP

>> TFIID_NTD2  WD40 associated region in TFIID subunit, NTD2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.3   2.2   4.5e-43   6.7e-40       3     130 .]     154     283 ..     152     283 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.3 bits;  conditional E-value: 4.5e-43
                 XXHHHHHHHHHHHHHHHTS-HHHHHHHGGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGGGGHH.HHHHHTT--SHHHHHHSHHHHHHHHS-EEEE CS
  TFIID_NTD2   3 dpekyekayelLkkwiessldiykpeLsrllyPvFvhlyLelvakgaeeeakkFfekfkedhealhkedlkkLasisspehleenelakafrenkyrik 101
                 +pe+y +ay++Lk w++ssl+iyk+eL+ ++yP+F++++L+lv+k+    a++Ff+k+ +d++ +h +++++L s++s +h++ene+a+af++n+++i+
  CCD24208.1 154 SPENYMRAYSMLKFWVDSSLEIYKSELNYIMYPIFIYTFLTLVSKN-PIIARRFFDKYCSDFKITHGTEINRLFSVNSMDHIKENEIASAFQNNRFTIT 251
                 799*****************************************99.789************************************************* PP

                 EEHHHHHHHHHHHHHTT-H...HHHHHHHHHE CS
  TFIID_NTD2 102 lskaafelLlrfLeekeka...vllkilnehl 130
                 +s+++++lLl+fL+e+++    ++++i+n+hl
  CCD24208.1 252 MSRTTLNLLLYFLNENSNVggsLIISIINQHL 283
                 ******************************97 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.06        90      35      67 ..     516     548 ..     490     563 .. 0.83
   2 !   10.0   0.0   0.00054      0.81      38      81 ..     586     629 ..     578     638 .. 0.87
   3 ?    2.0   0.0      0.17   2.5e+02      36      67 ..     626     657 ..     623     666 .. 0.88
   4 !    8.7   0.0    0.0015       2.2      38      76 ..     670     708 ..     653     718 .. 0.87
   5 !    8.0   0.0    0.0023       3.4      41      84 ..     715     758 ..     709     762 .. 0.83
   6 !    8.9   0.0    0.0012       1.8      36      71 ..     753     788 ..     747     798 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.06
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrllda 67 
                  +++++  +sL +++d +l a +++d+ ++l + 
   CCD24208.1 516 HNTNRDMTSLDFSEDSRLAAGGFQDSYIKLWSL 548
                  7889999**********************9886 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00054
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++ v s +++pd+k L  + +d +vrl +  + +++ s++ +++
   CCD24208.1 586 SGAVYSTSFSPDNKYLISGSEDKTVRLWSLDTNTTLVSYKGHNH 629
                  67889999****************************99998877 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.17
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrllda 67 
                  ++++ v +++++p g+ +a a +d + rl + 
   CCD24208.1 626 GHNHPVWDVKFSPLGHYFATASHDQTARLWSC 657
                  56788999*****************9999875 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0015
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                   s v +++++p+g     + sd ++r+ d+++g+ v+ +
   CCD24208.1 670 LSDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLF 708
                  57899****************************998766 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0023
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekav 84 
                  v s a +pdg+ L  + +dg +++ d+ +gk ++ ++ + ++a+
   CCD24208.1 715 VISTAVSPDGRWLSTGSEDGIINVWDIGTGKRLKLMRGHGKNAI 758
                  6667789************************9988877766655 PP

  == domain 6  score: 8.9 bits;  conditional E-value: 0.0012
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  + ++ + sL+++++g++L+ + +d +vr+ d ++++
   CCD24208.1 753 HGKNAIYSLSYSKEGNVLVSSGADHSVRVWDLKKAT 788
                  5678999***********************998875 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00023      0.34       3      50 ..     589     636 ..     587     659 .. 0.88
   2 !    8.1   0.0   0.00096       1.4       5      66 ..     675     737 ..     671     749 .. 0.79
   3 ?    3.7   0.0     0.022        32       2      32 ..     757     787 ..     756     794 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00023
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkl 50 
                 +Ys  +s+++++++ G++d+++++ +l+++++  + ++ +  v  vk+
  CCD24208.1 589 VYSTSFSPDNKYLISGSEDKTVRLWSLDTNTTLVSYKGHNHPVWDVKF 636
                 9******************************99998888877776666 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00096
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlil.vvtlDGtil 66 
                  + + ++g ++  G+ d++c++ ++ +++sv ++ + +  vi + +  d   l  ++ DG i 
  CCD24208.1 675 CVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISTAVSPDGRWLsTGSEDGIIN 737
                 678899**************************9999999888777666655552456777775 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.022
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlklesl 32 
                  iYs+ +sk+g++++  g d+ ++v +l+  
  CCD24208.1 757 AIYSLSYSKEGNVLVSSGADHSVRVWDLKKA 787
                 59************************99875 PP

>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   6.7e-09     1e-05       2      27 .]      62      87 ..      61      87 .. 0.97
   2 ?   -2.9   0.2       5.3   7.9e+03       2       8 ..     179     185 ..     178     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 6.7e-09
                HHHHHHHHHHHHCT-HHHHHHHHHHT CS
        LisH  2 eLNrLIydYLvkeGyeetAeaFekEa 27
                +LNr++++YL k+Gy+ t ++++ E+
  CCD24208.1 62 DLNRIVLEYLSKKGYHRTEAMLRAES 87
                8***********************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 5.3
                 HHHHHHH CS
        LisH   2 eLNrLIy 8  
                 eLN+++y
  CCD24208.1 179 ELNYIMY 185
                 8***998 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   4.8e-05     0.072     186     253 ..     560     621 ..     537     633 .. 0.85
   2 !    6.6   0.2    0.0017       2.6     230     255 ..     682     707 ..     672     807 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.8e-05
                 EE-------B--TTTT..TSS--SS---TT-ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEEE CS
      Nup160 186 vfepksfllslsgllg.lladpsrrksgasvalsldvavavveigqtylfalsrdgkLrvWnlltgkcl 253
                 + +p+ + ++  ++++ + +++ ++ sga    s+++++     +++yl + s d+++r+W+l+t+++l
  CCD24208.1 560 SSSPSPSATTADKYSKdFTNTTLIGHSGAV--YSTSFSP-----DNKYLISGSEDKTVRLWSLDTNTTL 621
                 566777778888888889999999999999..8888888.....9********************9976 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0017
                 TTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclat 255
                   y+f+ s+d++ r+W+++tg  ++ 
  CCD24208.1 682 GCYVFTGSSDKTCRMWDVSTGDSVRL 707
                 5699****************987765 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.03        44     183     216 ..     581     615 ..     511     620 .. 0.78
   2 ?    1.8   0.0     0.064        96     180     215 ..     620     656 ..     614     662 .. 0.81
   3 !    9.2   0.0   0.00034      0.51     183     216 ..     708     741 ..     696     747 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.03
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkffqv 216
                  +  hs  + +++fspd   l   sed +v+++ +
  CCD24208.1 581 TLIGHSgAVYSTSFSPDNKYLISGSEDKTVRLWSL 615
                 3344554899*********************9975 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.064
    Ge1_WD40 180 gllkieehs.liveaafspdGtalatasedGevkffq 215
                 +l+  + h   + +  fsp G   atas+d + +++ 
  CCD24208.1 620 TLVSYKGHNhPVWDVKFSPLGHYFATASHDQTARLWS 656
                 5566666764799999**************9999885 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00034
    Ge1_WD40 183 kieehsliveaafspdGtalatasedGevkffqv 216
                  + +++ ++++a+spdG  l+t sedG++  + +
  CCD24208.1 708 FLGHTAPVISTAVSPDGRWLSTGSEDGIINVWDI 741
                 5567778999********************9987 PP

>> nos_propeller  Nitrous oxide reductase propeller repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0054       8.1       8      29 ..     583     604 ..     580     618 .. 0.93
   2 ?   -0.5   0.0      0.78   1.2e+03       8      28 ..     667     687 ..     662     693 .. 0.90
   3 ?    3.5   0.0     0.046        68       8      27 ..     709     728 ..     704     733 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0054
  nos_propeller   8 iGHlsaaegdtkepdGkylval 29 
                    iGH  a+ + + +pd kyl++ 
     CCD24208.1 583 IGHSGAVYSTSFSPDNKYLISG 604
                    8*******************86 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.78
  nos_propeller   8 iGHlsaaegdtkepdGkylva 28 
                     GHls + + + +p+G y+++
     CCD24208.1 667 AGHLSDVDCVSFHPNGCYVFT 687
                    59****************975 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.046
  nos_propeller   8 iGHlsaaegdtkepdGkylv 27 
                     GH + + + +++pdG++l 
     CCD24208.1 709 LGHTAPVISTAVSPDGRWLS 728
                    6*****************96 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.15   2.2e+02     163     200 ..     579     615 ..     570     654 .. 0.68
   2 ?   10.4   0.0   0.00011      0.17       8      93 ..     685     772 ..     679     783 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.15
                   EEEEEE--SSEEEEEE-TTSSEEEEEEGGGTEEEEEET CS
  Cytochrom_D1 163 ktrtieaakflhDggldpdkRYflaaanaedkvavvdt 200
                   +t+ i+    ++ ++++pd++Y++++   +  v ++  
    CCD24208.1 579 NTTLIGHSGAVYSTSFSPDNKYLISGSEDK-TVRLWSL 615
                   577788888889999999999999954333.3444433 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00011
                   EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE.-SSEEE.EEEE--TTSEEEE CS
  Cytochrom_D1   8 vvverdagkvalldgdskeilavletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevk.iGlnar.svavSqddryviv 93 
                   v + + +   ++ d ++ +++  + ++ a  is   ++dgR++ + + Dg +++ D+ + + ++ ++  G na+ s+  S+++  ++ 
    CCD24208.1 685 VFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISTAVSPDGRWLSTGSEDGIINVWDIGTGKRLKLMRgHGKNAIySLSYSKEGNVLVS 772
                   5666777888889999999999999999*9***************************9999777776479999757888999887664 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.039        58      12      24 ..     590     602 ..     581     602 .. 0.81
   2 ?    5.4   0.0     0.012        18      13      23 ..     717     727 ..     711     727 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.039
                 EEEEE-TTSSEEE CS
        PD40  12 gaPsfSPDGkrla 24 
                 ++ sfSPD k+l+
  CCD24208.1 590 YSTSFSPDNKYLI 602
                 678*******985 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.012
                 EEEE-TTSSEE CS
        PD40  13 aPsfSPDGkrl 23 
                 + ++SPDG++l
  CCD24208.1 717 STAVSPDGRWL 727
                 6799******8 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00045      0.67     251     296 ..     578     623 ..     509     638 .. 0.77
   2 ?    0.4   0.0       0.1   1.5e+02     260     290 ..     713     743 ..     708     790 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00045
        Frtz 251 vavtsiPlraqvislafnpdedkLllGceDssviLydeerkitklv 296
                 +  t i     v s++f+pd+  L+ G+eD++v L+  ++++t++ 
  CCD24208.1 578 TNTTLIGHSGAVYSTSFSPDNKYLISGSEDKTVRLWSLDTNTTLVS 623
                 566778888899****************************999875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.1
        Frtz 260 aqvislafnpdedkLllGceDssviLydeer 290
                 a+vis+a++pd   L  G+eD+ + ++d  +
  CCD24208.1 713 APVISTAVSPDGRWLSTGSEDGIINVWDIGT 743
                 79**********************9999765 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   9.0    0.0025       3.7      38     160 ..       9     136 ..       2     207 .. 0.59
   2 ?    4.9   8.5     0.014        21      29     136 ..     334     528 ..     332     605 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0025
         SPX  38 slgleaetlrellnrpedskkkssertepstsaaadesgnsaadasssepkdeae.....slprrsplsrssrssssygglvssppsansssssddsse 131
                 +++ +++  +   ++++++++ ++++ +ps s+aa++++n++a++ + + ++++      +  +++  +r +   ++ +g + +p + +s++++ + + 
  CCD24208.1   9 QNQNQNSKQNGGQQQQQQQQQPNKTQAPPSGSSAATTTTNNNAQRTNGSFSASDLnrivlEYLSKKGYHRTEAMLRAESGRTLTPDNKQSPANTKNGKL 107
                 222222222222233333333333355666666666666555555555554444478887555555556777777777777777777777777777777 PP

         SPX 132 snpadssssssssesesssssspsllrrl 160
                  +p++++ + s+ ++  s++s+ sl ++ 
  CCD24208.1 108 VEPSTQPPDPSKLAKPISNPSTVSLPSKR 136
                 77443333333333333444433333333 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.014
         SPX  29 Ikkvqreleslgleaetlrellnrpedskkksse...............rtepstsaaadesgnsaadasssepkdeae.................... 92 
                 +k++++el+ ++ e+e  ++ll+  ++++ ++s+                ++p++s++a+++++++++++   ++d  +                    
  CCD24208.1 334 VKEIETELK-IKDEQERQQQLLSNDNAQPMDPSRntlmqefksmnnepyEQQPGPSSTAEQPSHANETTAGGGEEDDKKlenptitpnssvtpapiptp 431
                 799999999.999****************9999999999999998888844444444444444444433333333333346777777777777776554 PP

         SPX  93 .slprrsplsrssrssssygglvssppsansssssddssesnpa....................................................d 136
                  s++ ++++++++ ++++ ++++++ + ++s++  ++++++  +                                                    +
  CCD24208.1 432 sSSTVKIESNNNTTKQTAIMEKQKNLKLEDSKETLESPPKDMLPippktaldikleiqkvkesresirlnnlqaalpsvclytfhntnrdmtsldfS 528
                 4444444444444444444444444444444443333333332266655555555555555555555555555555555555555555555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1899  (0.105918); expected 358.6 (0.02)
Passed bias filter:                      737  (0.0411066); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.45
# Mc/sec: 5679.13
//
Query:       CCD24209.1  [L=552]
Description: hypothetical protein NDAI_0C05500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.7e-249  827.3   5.3   4.2e-249  827.1   5.3    1.0  1  PGI             Phosphoglucose isomerase
  ------ inclusion threshold ------
       0.13   12.6   0.2         13    6.2   0.1    2.8  2  SAP30_Sin3_bdg  Sin3 binding region of histone deacetylase co


Domain annotation for each model (and alignments):
>> PGI  Phosphoglucose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  827.1   5.3  4.7e-253  4.2e-249       1     486 []      61     545 ..      61     545 .. 0.99

  Alignments for each domain:
  == domain 1  score: 827.1 bits;  conditional E-value: 4.7e-253
                 E-TTSS--HHHHHHHHHHHHHTTHHHHHHHHHTT---BTTTTB---HHHHT-TT----EETTEESHHHHHHHHHHHHHHHHHHHTT-SB-TTS-B--EE CS
         PGI   1 dysknkvddeilealvklaeeaklkaarealfaGekinstenravlhvalrnrsnkpilvdGkdvvpevkevldkmkefsekvrsGewkGatgkaitdv 99 
                 d+skn v+de+l+al++la+eak+++ r+a+faGe+in+te+rav+hvalrnr+nkp+ vdGk+v pev++vl++mkefse+vrsGewkG+tgkaitdv
  CCD24209.1  61 DFSKNLVNDEVLSALIELAKEAKVTELRDAMFAGEHINTTEDRAVYHVALRNRANKPMSVDGKNVAPEVDAVLQHMKEFSEQVRSGEWKGYTGKAITDV 159
                 9************************************************************************************************** PP

                 EEE--GGGTHHHHHHHHHTGGG-TT-EEEEE--SSHHHHHHHHTT--GGGEEEEEE-SSS--HHHHHHHHHHHHHHHHHH--.GGGGGGTEEEESS-HH CS
         PGI 100 vniGiGGsdlGPvlvtealkkeserlkvafvsnvdgthiaevlkkldpettlfivasktfttaetllnaesakewllkalke.dsavakhfvalstnae 197
                 vniGiGGsdlGPv+vtealk+++ +lkv+fvsn+dgthiae+lk ++pettlf++asktfttaet++na+sak w+l+++++   +vakhf+alstn++
  CCD24209.1 160 VNIGIGGSDLGPVMVTEALKHYAGALKVHFVSNIDGTHIAETLKVVNPETTLFLIASKTFTTAETITNANSAKTWFLEKTGNnTANVAKHFAALSTNET 258
                 *****************************************************************************999874678************* PP

                 HHHHHT--GGGEEE--TTS-GGG-TTSGGGHHHHHHH-HHHHHHHHHHHHHHHHHHHHS-GGG-HHHHHHHHHHHHHHTS---EEEEEES-GGGTTHHH CS
         PGI 198 kveefGideknmfefwdwvGGryslwsaiGlsvalsiGfenfeelleGaaaidkhfleaplekniPvllalvgvwyvnflgaeteailpydqylerlaa 296
                 +v +fGid+knmf f++wvGGrys+wsaiGlsval++Gf+nfe++l+Ga+a+dkhf+e+ple+niP+l +l++vwy+nf gaet+ + p+dqyl+r++a
  CCD24209.1 259 EVAKFGIDTKNMFGFENWVGGRYSVWSAIGLSVALYVGFDNFEAFLKGAEAVDKHFTETPLEDNIPLLGGLLSVWYNNFHGAETHLVAPFDQYLHRFPA 357
                 *************************************************************************************************** PP

                 HHHHHHHHHH---BBTTS-B-SS--S-EEE---TTTGGGTSHHHHHHSSS---EEEEEEEE-S-.GGGGHHHHHHHHHHHHHHHHHHH-B-HHHHHHHH CS
         PGI 297 ylqqldmesnGksvtkdgvlvdvetgeiifGeagtngqhafyqlihqGtkliPcdfiaavksqn.ieiadhhkillsnffaqtealmvGkseeevkkel 394
                 ylqql+mesnGksvt+ +v+++++tg+i+fGe++tn+qh+f+ql+hqGtkliP+dfi a++s+n ie++ h+k+l snffaq+ealmvGk+ee+vk+e 
  CCD24209.1 358 YLQQLSMESNGKSVTRGNVFANYSTGSILFGEPATNAQHSFFQLVHQGTKLIPADFILAAQSHNpIENKLHQKMLASNFFAQAEALMVGKNEEQVKAEG 456
                 *************************************************************************************************99 PP

                 HHTHHHHHGGGG-B-----EEEEEEEE--HHHHHHHHHHHHHHHHHHHHHHTB-TT--GGGHHHHHHHHHHHHHHSSS----SS-HHHHHHH CS
         PGI 395 akakveklvphktfeGnrPsnsillekltpaelGalialyehkilvqGviwginsfdqwGvelGkelakkilkeleasekvsdfdsstngli 486
                 a++    lvphk+f+GnrP++sil++k+tpa+lGalia+yeh ++++G+iw+insfdqwGvelGk+lak i kel+ s k++++d+stngli
  CCD24209.1 457 ATG---GLVPHKVFSGNRPTTSILAQKITPATLGALIAYYEHVTFTEGAIWNINSFDQWGVELGKVLAKVIGKELDGSDKIASHDASTNGLI 545
                 766...9************************************************************************************8 PP

>> SAP30_Sin3_bdg  Sin3 binding region of histone deacetylase complex subunit SAP30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0015        13      30      45 ..     245     260 ..     243     263 .. 0.89
   2 ?    3.2   0.0     0.012   1.1e+02      28      42 ..     307     321 ..     307     323 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0015
  SAP30_Sin3_bdg  30 aVarHFkaqpvdEkev 45 
                      Va+HF+a+  +E+ev
      CCD24209.1 245 NVAKHFAALSTNETEV 260
                     79************98 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.012
  SAP30_Sin3_bdg  28 aeaVarHFkaqpvdE 42 
                     aeaV +HF ++p+++
      CCD24209.1 307 AEAVDKHFTETPLED 321
                     689*******99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4196.52
//
Query:       CCD24210.1  [L=419]
Description: hypothetical protein NDAI_0C05510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-18   67.1   2.3    2.9e-18   65.9   0.8    2.4  3  CAF1C_H4-bd     Histone-binding protein RBBP4 or subunit C of
    1.4e-14   54.2   9.3      0.012   16.4   1.6    6.6  6  WD40            WD domain, G-beta repeat
    1.9e-08   34.4   3.4    2.6e-06   27.4   0.3    3.5  4  eIF2A           Eukaryotic translation initiation factor eIF2
    3.7e-07   30.3   4.3      0.086   13.1   0.0    5.5  5  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom
  ------ inclusion threshold ------
       0.11   11.7   0.0        3.3    6.8   0.0    2.3  2  SdiA-regulated  SdiA-regulated


Domain annotation for each model (and alignments):
>> CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CAF1 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.8     8e-22   2.9e-18       2      66 ..      20      86 ..      19      87 .. 0.91
   2 ?   -1.3   0.0      0.75   2.7e+03       4      34 ..     218     254 ..     215     279 .. 0.68
   3 ?   -3.6   0.0       3.9   1.4e+04      53      62 ..     398     407 ..     393     408 .. 0.79

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 8e-22
                 HHHHHHHHHHHHEEEEEEEE-SS--S-EEE-S-...B---EEEEEEEE----TT..SS-EEEEEEEEEEE CS
  CAF1C_H4-bd  2 eylewkknapfLYdmlhshslewPsLsfdwlPd...tvsslskqrllvGtqtsg..keqnylyvakvslp 66
                 +y +wkkn+++LYd+l +++++wPsL+++++Pd   t     ++r+l++++ts   +e++ +++ k+s +
   CCD24210.1 20 RYSNWKKNTKLLYDYLNTNATKWPSLTCQFFPDldtT---SDTHRILISSFTSSqlPEDEAIHISKISTL 86
                 699*****************************97642...689*********99889*********9987 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.75
                  HHHHHHHHHHEEEEEEEE-SS--S-EEE..........-S- CS
  CAF1C_H4-bd   4 lewkknapfLYdmlhshslewPsLsfdw..........lPd 34 
                  ++w+ +    Y + +++ l+ P L +++          +P+
   CCD24210.1 218 QIWDIKQ---Y-FHSNPVLDKPVLNIQFdalgvndvswMPS 254
                  5666666...3.44466788888888886666666666664 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.9
                  SS-EEEEEEE CS
  CAF1C_H4-bd  53 keqnylyvak 62 
                  +++n+++++k
   CCD24210.1 398 SNDNSIQIWK 407
                  5789999986 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.037   1.3e+02      20      38 .]     138     156 ..      83     156 .. 0.77
   2 ?    4.0   0.0     0.028     1e+02      15      38 .]     197     221 ..     184     221 .. 0.71
   3 ?    3.6   0.1     0.039   1.4e+02      13      32 ..     246     266 ..     234     272 .. 0.65
   4 !    9.3   0.0   0.00061       2.2      10      38 .]     287     317 ..     281     317 .. 0.82
   5 !   15.8   0.1   5.3e-06     0.019       9      38 .]     330     362 ..     323     362 .. 0.80
   6 !   16.4   1.6   3.4e-06     0.012       4      38 .]     371     407 ..     368     407 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.037
                 TTSSEEEEEETTSEEEEEE CS
        WD40  20 pdgawlasGsdDgtvriWd 38 
                 ++ + +a++s +g+v+i+d
  CCD24210.1 138 QNPDVIAAASSNGSVYIFD 156
                 34445777766******98 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.028
                 EEEEETTSSE.......EEEEETTSEEEEEE CS
        WD40  15 slafspdgaw.......lasGsdDgtvriWd 38 
                 sl      aw       las+   g v iWd
  CCD24210.1 197 SL------AWnyqkegtLASCYLQGQVQIWD 221
                 56......333344445699999*******9 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.039
                 EEEEEEETTSSEE.EEEETTS CS
        WD40  13 vtslafspdgawl.asGsdDg 32 
                 v+++++ p+++ l +++++  
  CCD24210.1 246 VNDVSWMPSHDSLfVACGESD 266
                 999997666666523454444 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00061
                 S.SSEEEEEEETTSSEEEEE..ETTSEEEEEE CS
        WD40  10 H.ssvtslafspdgawlasG..sdDgtvriWd 38 
                 H ++v+s++f+  +++l+++  s  g v +Wd
  CCD24210.1 287 HnGGVNSCKFNYQNNMLLASadS-EGLVNMWD 317
                 8566************8755344.*******9 PP

  == domain 5  score: 15.8 bits;  conditional E-value: 5.3e-06
                 SS.SSEEEEEEETTSSEEE.EEE.TTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawla.sGs.dDgtvriWd 38 
                  H ss++ + ++p+ + ++ +++  Dg v++Wd
  CCD24210.1 330 NHgSSISTIEWNPNLDTIIaTAGqNDGLVKLWD 362
                 59888************85355635*******9 PP

  == domain 6  score: 16.4 bits;  conditional E-value: 3.4e-06
                 EEEEESS.SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasG.sdDgtvriWd 38 
                 l +  GH  +v++++++ + +wl+++ s D+++ iW+
  CCD24210.1 371 LFVHGGHmLGVNDISWDLHDSWLMCSvSNDNSIQIWK 407
                 5566799988*************977789*******6 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.55     2e+03      94     135 ..     121     160 ..     114     184 .. 0.74
   2 ?    1.6   0.0     0.061   2.2e+02      84     134 ..     175     224 ..     169     231 .. 0.61
   3 !   27.4   0.3   7.4e-10   2.6e-06      47     159 ..     232     348 ..     197     353 .. 0.73
   4 !    8.8   0.2   0.00039       1.4     105     185 ..     337     415 ..     335     418 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.55
                 EEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTT CS
       eIF2A  94 viskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkk 135
                 ++ k+ +   N   + p++  v+ a     +G++ i+d++k 
  CCD24210.1 121 LTIKFPNGDCNRARYLPQNPDVIAAAS--SNGSVYIFDRTKH 160
                 567888889999999999988888864..4589999998754 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.061
                 EEEEEECS..CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTT CS
       eIF2A  84 kvslfdlk..vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkk 134
                 +++lf++   v+ +++ +++++ ++ ++++ +  l + +  l+G+++iwd k+
  CCD24210.1 175 DAVLFNNSetVEELHE-NTNEAISLAWNYQKEGTLASCY--LQGQVQIWDIKQ 224
                 5566665322333333.2333445677777776666654..89******9986 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 7.4e-10
                 TT--EEECCEESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.CEEEEEEEEES-....-EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEE..E CS
       eIF2A  47 kkkksevvelkkegpihdvaWspkskefaviyGkmpakvslfdlk.vkviskleeqkr....NtiffspkgklvllaGfgnlaGeleiwdvkkkkk..i 138
                  +k++ +++ +  g + dv+W p+ + + v  G+++   +lfd++ +k +s++ ++++    N+ +f+++++++l +   + +G +++wd  ++++  i
  CCD24210.1 232 LDKPVLNIQFDALG-VNDVSWMPSHDSLFVACGESDT-LALFDQRiGKEVSRIAQNRHnggvNSCKFNYQNNMLLAS--ADSEGLVNMWDIRNLDQypI 326
                 45666677777776.*******************985.789999877777777766542222799*******99876..47889********6665226 PP

                 EEEE-.TT--EEEE-TTSSEEE CS
       eIF2A 139 akaea.anatlvewspdgryvl 159
                 +++++ +  +++ew+p+ + ++
  CCD24210.1 327 KSINHgSSISTIEWNPNLDTII 348
                 77776255689*****855443 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.00039
                 EEEE-TT.SSEEEEE-TTSSS-EEEEEETTTTEE....EEEEE-TT--EEEE-TTSSEEEEEE-TTT-SSS-EEEEEETTTEEEEE CS
       eIF2A 105 tiffspk.gklvllaGfgnlaGeleiwdvkkkkk....iakaeaanatlvewspdgryvlTattaprlrvdngfkiwsysGklvyk 185
                 ti ++p+ ++++++a  g+  G +++wdv+++++    ++  +     ++ w+ ++++++ +++      dn+++iw+   +lv+ 
  CCD24210.1 337 TIEWNPNlDTIIATA--GQNDGLVKLWDVSNTDNellfVHGGHMLGVNDISWDLHDSWLMCSVSN-----DNSIQIWKPAHNLVEA 415
                 788999834444444..455699999999944331111344455667789999999999999999.....9999999988777765 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00074       2.7       8      69 ..     141     224 ..     134     242 .. 0.68
   2 !    7.3   0.0    0.0016       5.9      39      82 ..     244     288 ..     234     301 .. 0.83
   3 !   13.1   0.0   2.4e-05     0.086       2      90 ..     250     341 ..     249     343 .. 0.75
   4 !    7.4   0.2    0.0015       5.5      34      70 ..     328     366 ..     315     386 .. 0.80
   5 ?    2.0   0.2     0.073   2.6e+02      37      65 ..     377     406 ..     359     413 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00074
  ANAPC4_WD40   8 DLiAlatedgellvf.Rlng..qrvwtl..................eedkedsevrsLaWk.pdgklLavaysdgevrlldaes 69 
                  D iA a+++g++++f R++    r+ +                   e +++ +e  sLaW+ +++  La  y +g+v++ d+++
   CCD24210.1 141 DVIAAASSNGSVYIFdRTKHgsSRIRQSknlkpydavlfnnsetveELHENTNEAISLAWNyQKEGTLASCYLQGQVQIWDIKQ 224
                  77777777777776634443453333334444444455555555554578888999****9346779************99864 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0016
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdg.evrlldaesgkvvhslsvksek 82 
                    v++++W p+   L va+ ++ ++ l+d   gk v+ +  ++++
   CCD24210.1 244 LGVNDVSWMPSHDSLFVACGESdTLALFDQRIGKEVSRIAQNRHN 288
                  67999**************987699***********999888775 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 2.4e-05
  ANAPC4_WD40   2 swcptmD.LiAlatedgellvfRl.ngqrvwtleedkedsevrsLaWkpdgk.lLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  sw p+ D L+    e++ l++f    g++v  ++++ +++ v+s +++ +++ lLa a s+g v++ d+ + +     s+++ +++++++W+
   CCD24210.1 250 SWMPSHDsLFVACGESDTLALFDQrIGKEVSRIAQNRHNGGVNSCKFNYQNNmLLASADSEGLVNMWDIRNLDQYPIKSINHGSSISTIEWN 341
                  677777744444445556666543157899999999***********9765516899*************988777777777777******8 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.0015
  ANAPC4_WD40  34 edkedsevrsLaWkpd.gklLav.aysdgevrlldaesg 70 
                  + +++s+++ ++W+p+ ++++a  + +dg v+l d++++
   CCD24210.1 328 SINHGSSISTIEWNPNlDTIIATaGQNDGLVKLWDVSNT 366
                  55899**********95667775256789******9986 PP

  == domain 5  score: 2.0 bits;  conditional E-value: 0.073
  ANAPC4_WD40  37 edsevrsLaWkpdgklL.avaysdgevrll 65 
                  +   v++++W   ++ L + + +d+++++ 
   CCD24210.1 377 HMLGVNDISWDLHDSWLmCSVSNDNSIQIW 406
                  5567999***98887661555667899886 PP

>> SdiA-regulated  SdiA-regulated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.02        70     116     182 ..     241     299 ..     171     320 .. 0.63
   2 ?    6.8   0.0   0.00093       3.3      13      50 ..     321     360 ..     315     365 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.02
  SdiA-regulated 116 akNkGfEGvaydaredrLlva.kErkPvklyevkgvlskeelkvsekekllekelflrdlsslefdee 182
                      +  G   v++++ +d+L+va  E + ++l+  ++   ++e++  ++++++        + s +f+ +
      CCD24210.1 241 FDALGVNDVSWMPSHDSLFVAcGESDTLALFDQRI---GKEVSRIAQNRHN------GGVNSCKFNYQ 299
                     45567777888888888887635777777777766...3333333333322......45555555555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00093
  SdiA-regulated  13 leakplagiekd..lSgltydpdtktLfavtnkpeelveL 50 
                     l++ p++ i++   +S + ++p+ +t++a+ +++  lv+L
      CCD24210.1 321 LDQYPIKSINHGssISTIEWNPNLDTIIATAGQNDGLVKL 360
                     778889999887679**********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3229.55
//
Query:       CCD24211.1  [L=75]
Description: hypothetical protein NDAI_0C05520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-10   39.2   1.8    9.1e-10   39.2   0.7    1.6  2  NpwBP     mRNA biogenesis factor


Domain annotation for each model (and alignments):
>> NpwBP  mRNA biogenesis factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.2   3.6e+03      37      49 .]      10      19 ..       1      19 [. 0.59
   2 !   39.2   0.7   5.1e-14   9.1e-10       1      40 [.      23      62 ..      23      74 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.2
       NpwBP 37 esddpeiadiplP 49
                ++dd+   +i+ P
  CCD24211.1 10 NNDDN---TIKTP 19
                45677...67666 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 5.1e-14
       NpwBP  1 PekSiYYdPvlNPlGkpPpgm....Pylektlk.yeppseeesdd 40
                +++Si+Yd ++NP+G +P++     Py+++t++ + p ++    d
  CCD24211.1 23 GKRSIFYDEDWNPTGSAPSEQfrniPYNPSTFVrKGP-DI----D 62
                79*****************555667*******94333.33....4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       163  (0.00909142); expected 358.6 (0.02)
Passed bias filter:                      152  (0.00847788); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 586.02
//
Query:       CCD24212.1  [L=218]
Description: hypothetical protein NDAI_0C05530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-17   61.7   3.3    9.8e-17   61.3   3.3    1.2  1  Med8      Mediator of RNA polymerase II transcription complex
     0.0066   16.9   3.8       0.89   10.1   0.1    3.3  3  NPV_P10   Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> Med8  Mediator of RNA polymerase II transcription complex subunit 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   3.3   1.1e-20   9.8e-17      11     124 ..      32     151 ..      30     197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 1.1e-20
        Med8  11 sLealrqRladLksslaslinkleqedellsWpslldqaallSnnLttlsklLksektplLrnlvvlPlllsperdeeLakltegRvpvfsHevvpdlL 109
                 +L+a+r+Rla+L++sl  +  +l++  el++W sl++q ++   +L ++++ L +  +++L ++vv+Pl+++p +  e              +++++lL
  CCD24212.1  32 ALDAVRMRLAQLTHSLRKIRDDLSRA-ELPQWYSLQSQLNVTLAQLASVTSTL-QHFQDTLDSTVVYPLPKFPTTSHE--------------NLLTTLL 114
                 59*********************997.9*************************.999*********************..............******* PP

        Med8 110 RtKldPevE......................ekeaql 124
                 R+K  P+v                       e+ +q+
  CCD24212.1 115 RKKNAPDVDewinnskealgmdpnvqnvkelERSLQE 151
                 ********97777777777777555444444333333 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00042       3.8      41      72 ..      30      61 ..       5      63 .. 0.77
   2 !   10.1   0.1   9.9e-05      0.89      31      71 ..      56      99 ..      53     103 .. 0.84
   3 ?    0.6   0.3     0.086   7.7e+02      32      46 ..     137     151 ..     107     184 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00042
     NPV_P10 41 nekLdaqsaqLaeletkvenIqdiLnpdevPd 72
                ++ Lda    La+l  ++ +I d L+  e+P+
  CCD24212.1 30 TQALDAVRMRLAQLTHSLRKIRDDLSRAELPQ 61
                678***********************888886 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 9.9e-05
     NPV_P10 31 qenlpdvtelnekLdaqsaqLaeletkvenIqdiLnpde...vP 71
                +++lp+   l+++L+   aqLa++ +++++ qd+L + +   +P
  CCD24212.1 56 RAELPQWYSLQSQLNVTLAQLASVTSTLQHFQDTLDSTVvypLP 99
                578999999**************************966554455 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.086
     NPV_P10  32 enlpdvtelnekLda 46 
                  n+++v+el+  L++
  CCD24212.1 137 PNVQNVKELERSLQE 151
                 466666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1644.63
//
Query:       CCD24213.1  [L=375]
Description: hypothetical protein NDAI_0C05540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-74  246.1   4.3    1.1e-27   95.7   0.2    3.1  3  Mito_carr       Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.017   15.4   0.0        1.8    8.9   0.0    3.0  3  HMD             H2-forming N5,N10-methylene-tetrahydromethano
      0.037   12.4   0.0       0.14   10.6   0.0    1.7  2  Hydantoinase_B  Hydantoinase B/oxoprolinase


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.2   1.9e-31   1.1e-27       3      96 ..      52     169 ..      50     170 .. 0.86
   2 !   78.7   0.1   3.9e-26   2.3e-22       4      95 ..     176     265 ..     173     267 .. 0.93
   3 !   72.2   0.0     4e-24   2.4e-20       8      93 ..     289     374 ..     284     375 .] 0.95

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 1.9e-31
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.............CCCSSTTTSCSS.....................HHHHHHHHHHHHHHHGGGTT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqt.............qkksskksksaa.....................ildvlkkiykeeGlrglyrG 67 
                 ++++ +++aGg++g+++++vt+P+d+vKtrlq+             +                                ++ +l+++yk eG+r+l++G
  CCD24213.1  52 VKPWVHFVAGGIGGMAGAVVTCPFDLVKTRLQSdiyqsiykskvksA----------TtmtsnskilnsiiqggthfkeTFGILGNVYKREGFRSLFKG 140
                 689******************************88877666544431..........1334445667778888888888******************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr  68 llpnllrvapasalkfvlyetlkrlllkk 96 
                 l+pnl++v+pa++++f++y t+k+++ k 
  CCD24213.1 141 LGPNLVGVIPARSINFFTYGTTKEIYSKA 169
                 ************************99885 PP

  == domain 2  score: 78.7 bits;  conditional E-value: 3.9e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                  ++ +l+a+++ag +++++t+P++++Ktr+q++k  ++k+ +++ +d+lk+++++eG+ gly+Gl+++ l+++ +  l+++lye++k+++++
  CCD24213.1 176 APFIHLMAAATAGWATSTATNPIWLIKTRVQLDKAGTTKK-YKNSWDCLKSVVRTEGIYGLYKGLSASYLGSV-EGILQWLLYEQMKHVIKR 265
                 56889*******************************9885.566***************************99.**************9976 PP

  == domain 3  score: 72.2 bits;  conditional E-value: 4e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 +  ++gla+ va++vt+P +vv+trl   +k++ k k++++l+ ++ i+keeGl+++y+Gl+p l+r++p+s ++f++ e ++rll
  CCD24213.1 289 RSGSAGLAKFVASIVTYPHEVVRTRLRQMPKENGKLKYTGLLQSFQVIMKEEGLASMYSGLTPHLMRTVPNSIIMFGTWELMIRLL 374
                 566899*****************************************************************************998 PP

>> HMD  H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.46   2.8e+03      46      81 ..     120     156 ..     105     171 .. 0.75
   2 ?    2.9   0.0     0.021   1.3e+02      45      72 ..     217     244 ..     205     268 .. 0.84
   3 ?    8.9   0.0   0.00029       1.8      16      80 ..     296     362 ..     280     372 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHHHHHHHHHCC-HHHH.HHCHHCC-S CS
         HMD  46 esLqtiaslveksGieglekalnpell.lksaksmnl 81 
                 e++  + ++ +++G + l k l p+l+ +  a+s+n+
  CCD24213.1 120 ETFGILGNVYKREGFRSLFKGLGPNLVgVIPARSINF 156
                 5666677788899999999999999873445666665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHHHHHHHHHHHCC-HHHH CS
         HMD  45 lesLqtiaslveksGieglekalnpell 72 
                 ++s + ++s+v+++Gi gl k l    l
  CCD24213.1 217 KNSWDCLKSVVRTEGIYGLYKGLSASYL 244
                 66778899*************9987765 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHHH..HHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHCHHCC- CS
         HMD  16 Avtlagildyyd..vvtkilkapkemvekqilesLqtiaslveksGieglekalnpelllksaksmn 80 
                 A  +a+i++y +  v t + + pke  + + +  Lq  + +++++G++ +   l p+l+ +  +s++
  CCD24213.1 296 AKFVASIVTYPHevVRTRLRQMPKENGKLKYTGLLQSFQVIMKEEGLASMYSGLTPHLMRTVPNSII 362
                 6667888888652133566778999999999999************************998888876 PP

>> Hydantoinase_B  Hydantoinase B/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0     0.089   5.3e+02     253     289 ..     203     240 ..     194     268 .. 0.78
   2 ?   10.6   0.0   2.3e-05      0.14     185     236 ..     275     328 ..     269     347 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.089
  Hydantoinase_B 253 deatvDftgtspqvkgniNaplavt.lsaviyvlrclv 289
                     +++++D +gt ++ k+++ + ++v+ + +++  ++ l 
      CCD24213.1 203 TRVQLDKAGTTKKYKNSWDCLKSVVrTEGIYGLYKGLS 240
                     5689999***************9994444444444455 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 2.3e-05
  Hydantoinase_B 185 anqvgerrlkelieeyGldtveaamdeildnaeravraalaelpd..gtyeaed 236
                     +n++ ++++ke +++ G + + ++++ i+++ ++ vr +l+++p+  g+++++ 
      CCD24213.1 275 GNKTTADKIKEWCQRSGSAGLAKFVASIVTYPHEVVRTRLRQMPKenGKLKYTG 328
                     79999***************************************9776565554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2846.41
//
Query:       CCD24214.1  [L=147]
Description: hypothetical protein NDAI_0C05550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-42  142.1   3.9    1.9e-41  140.0   2.6    1.9  2  Ribosomal_L21e  Ribosomal protein L21e
    0.00022   20.9   0.1    0.00027   20.6   0.1    1.1  1  LRS4            Monopolin complex subunit LRS4


Domain annotation for each model (and alignments):
>> Ribosomal_L21e  Ribosomal protein L21e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   2.6   2.1e-45   1.9e-41      14     101 .]       1      88 [.       1      88 [. 0.99
   2 ?    1.6   0.0     0.028   2.5e+02      20      50 ..      93     123 ..      89     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 140.0 bits;  conditional E-value: 2.1e-45
                     TTS--GGG-SS--SHHHH----TT-EEEE---TT--SS---GGGTT-EEEE..EEEETTEEEEEEEETTE..EEEEEE-GGGEEE--. CS
  Ribosomal_L21e  14 lfskkfrkkgvpplstylreykkGdkVdikidpsvqkgmphkryhGktgrvynvtkravgvivnkkvggkileKriivriehlkksks 101
                     +f+++frk+g + lstyl+ yk+Gd+Vdik+++s+qkgmphk+y+Gktg+vynvtk++vgvi+nk vg+++leKr+++rieh+k+sk+
      CCD24214.1   1 MFQRDFRKHGAIALSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRIEHIKHSKC 88 
                     8*************************************************************************************98 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.028
                     GG-SS--SHHHH----TT-EEEE---TT--S CS
  Ribosomal_L21e  20 rkkgvpplstylreykkGdkVdikidpsvqk 50 
                      ++  ++ ++ ++   kG+ V++k +p+  +
      CCD24214.1  93 LDRVKSNAAKRVEAKAKGEAVQLKRQPAQPR 123
                     5566677778888889999999999998765 PP

>> LRS4  Monopolin complex subunit LRS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1     3e-08   0.00027      11      67 ..      61     119 ..      50     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 3e-08
                 HHHHHHH...HHHH...........HHHHHHHXXXXXXXXXXXX..XXXXXXXXXXXXXXX CS
        LRS4  11 kldneri...YlekaLnla.hllrsdslqksfldalktnatdselqnekltdEklllqeQi 67 
                 ++ n  +   Ylek Lnl+ + ++ ++ +++fld  k na +    + k+  E ++l++Q 
  CCD24214.1  61 VIINKMVgnrYLEKRLNLRiEHIKHSKCRQEFLDRVKSNAAKRV--EAKAKGEAVQLKRQP 119
                 5555555788*******97689********************77..99************4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1271.36
//
Query:       CCD24215.1  [L=192]
Description: hypothetical protein NDAI_0C05560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-13   50.1   0.2    6.3e-13   48.2   0.2    2.0  1  S4        S4 domain


Domain annotation for each model (and alignments):
>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.2   3.5e-17   6.3e-13       1      44 [.     107     150 ..     107     153 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 3.5e-17
                 EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-T CS
          S4   1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkp 44 
                 rRL++ +++lgla+s  +Ar lI+++++ V +++v++ps++V+ 
  CCD24215.1 107 RRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVTIPSFMVRL 150
                 8*****************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 1650.32
//
Query:       CCD24216.1  [L=152]
Description: hypothetical protein NDAI_0C05570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-07   32.4  11.5    1.6e-07   32.1  11.5    1.2  1  cwf18     cwf18 pre-mRNA splicing factor


Domain annotation for each model (and alignments):
>> cwf18  cwf18 pre-mRNA splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1  11.5   8.9e-12   1.6e-07       2     135 .]       4     146 ..       3     146 .. 0.80

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 8.9e-12
       cwf18   2 LeeaaeeRKeRLaalrskkrkqeekekeeeeeeeeeeekkelpklsfRnYdpeteglklgfeappklaketveeqaaeleeeakeeaee........sk 92 
                 +e++ e+RK+RL++l++k +k ++++   +e++++   +++l+++++++    t+++++ + ++   + e++ ++ +++ +e+k++a          ++
  CCD24216.1   4 IEKQTESRKRRLEQLQAKLKKVPHHT---NEKQTSIPVDDSLHNVTGKEAPNATKSIEKPTMEEDGVTYEALPKDQDNILNEVKRDAIMiasklespDE 99 
                 58899*****************7544...5667777777888889999999999988888888888888888888888888888855447777777744 PP

       cwf18  93 ei....dlfnlapkkpnwDLKRdlakklekLerrTqkAiaeLireRL 135
                 ++       +++   +  DLK +l  +le L++rT+ ++ +++reRL
  CCD24216.1 100 KNdsflHRHEVEKVSATKDLKLKLRDQLEILDQRTNASLKRILRERL 146
                 44111144567777799*****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1508  (0.0841095); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1151.73
//
Query:       CCD24217.1  [L=300]
Description: hypothetical protein NDAI_0C05580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-40  135.2  19.1    2.7e-20   72.5   3.5    2.3  2  UPF0016     Uncharacterized protein family UPF0016
  ------ inclusion threshold ------
       0.17   10.6   7.9       0.01   14.6   1.5    2.0  2  Presenilin  Presenilin


Domain annotation for each model (and alignments):
>> UPF0016  Uncharacterized protein family UPF0016
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.6   7.7   4.9e-23   4.4e-19       2      75 .]      63     136 ..      62     136 .. 0.96
   2 !   72.5   3.5     3e-24   2.7e-20       2      75 .]     212     285 ..     211     285 .. 0.98

  Alignments for each domain:
  == domain 1  score: 68.6 bits;  conditional E-value: 4.9e-23
     UPF0016   2 aaflliflaElGDkTqlaaalLaarykplpVflGavlAlalmtvlsvllGsslakrlperlielvaavlFllfG 75 
                 +a+++i l+E+GDkT+l+aal+a+r+  l Vf++a   la+mtvls ++G+s++ +++e+++ ++a++lFl+fG
  CCD24217.1  63 MAITMIGLSEIGDKTFLIAALMAMRNPRLLVFFAASSSLAIMTVLSGIAGHSFSYFISEKYTGFLAGILFLVFG 136
                 799***********************5556*******************************************9 PP

  == domain 2  score: 72.5 bits;  conditional E-value: 3e-24
     UPF0016   2 aaflliflaElGDkTqlaaalLaarykplpVflGavlAlalmtvlsvllGsslakrlperlielvaavlFllfG 75 
                 ++f+++fl ElGD++q+ +++La++++++  ++Gavl+++++++++v+ G++la+++++r+++lv+a+lF  fG
  CCD24217.1 212 QVFVMVFLGELGDRSQISIIALASNNNYWYAIAGAVLGHVVCSGVAVVGGRYLATKISMRTMTLVGALLFYTFG 285
                 79***********************************************************************8 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.5   1.2e-06      0.01      25     117 ..      23     119 ..       3     138 .. 0.64
   2 ?   -1.4   0.6     0.083   7.4e+02      63      85 ..     271     293 ..     242     299 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.2e-06
  Presenilin  25 iksvefysseekdeaslvytpfee....esdstgqkllnsllnalililv..ivvvtfllvlLykyrcykvikgwlilsslllLflvsglllaevlkay 117
                 ++s   ++++++++ s++ ++++     + ++t+++  ns++ a+++i++  i   tfl+ +L  +r  +++  + + ssl +++++sg+  +++   +
  CCD24217.1  23 TTST--NTKKVNASPSSLVKTSHVsddtPVENTSTSPYNSFIMAITMIGLseIGDKTFLIAALMAMRNPRLLVFFAASSSLAIMTVLSGIAGHSFSYFI 119
                 2222..23333333333333333312226667777777888888877754337789********************************99876655554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.083
  Presenilin  63 nalililvivvvtfllvlLykyr 85 
                  +++l++++++ tf ++ Ly+  
  CCD24217.1 271 RTMTLVGALLFYTFGIIYLYQSY 293
                 45677778888888888888644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2170.56
//
Query:       CCD24218.1  [L=487]
Description: hypothetical protein NDAI_0C05590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-14   53.2   0.0    4.9e-14   52.3   0.0    1.5  1  tRNA_int_end_N2  tRNA-splicing endonuclease subunit sen54 N-t
  ------ inclusion threshold ------
        0.1   12.8   0.3       0.63   10.2   0.1    2.3  2  Med30            Mediator complex subunit 30


Domain annotation for each model (and alignments):
>> tRNA_int_end_N2  tRNA-splicing endonuclease subunit sen54 N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   5.4e-18   4.9e-14       1      71 [.      72     140 ..      72     141 .. 0.90

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 5.4e-18
  tRNA_int_end_N2   1 hdalsye.RvhsskslvraiwfprdrvvvvespkarGkhfktmGvsrarrgrlwLlpeEaLYLvErGsldir 71 
                      +d+ls++  ++  kslv+a++ p+++ + +++p  +G++++tmG+++ ++g+  L  +E++YL+ErG++  +
       CCD24218.1  72 FDTLSHSiAGSVLKSLVKAYYIPDNHNALLPHP--KGNFMQTMGRMN-SNGQFTLSFHEFVYLAERGTVSPY 140
                      6788888888899******************66..*********554.********************9765 PP

>> Med30  Mediator complex subunit 30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.23     2e+03      82      98 ..     256     272 ..     235     291 .. 0.71
   2 ?   10.2   0.1     7e-05      0.63      36     139 ..     321     423 ..     312     427 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.23
       Med30  82 piesLipyvdeekskre 98 
                  +++L+py++ +k+  e
  CCD24218.1 256 TLNKLVPYTKAPKTLEE 272
                 47899999997755444 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 7e-05
       Med30  36 rtqskhqaqdrkkklqeqlrqlkvlfkkLrliYekckenc.qgleevpiesLipyvdeekskreerkkseevkqlkeerkelleklkeknkqLkeimdq 133
                 +++ ++++    k++q+ +++l  +f+ L+  Y +  e + +++  ++      y ++ ksk++++k+s++ ++ k+++k  l++     +qL+ ++  
  CCD24218.1 321 NKNDNNVKFPTYKDFQNIFNNLDYKFEFLN--YSRQDEISwEDVSFTNGVPTNTYLSNLKSKAQQKKSSDNDNNTKKKKKRALKTFPPHVQQLRRLKAG 417
                 556677777888999999999999999998..5777777777777666444445777789*************************************99 PP

       Med30 134 lrkllW 139
                  r++l 
  CCD24218.1 418 YRSFLL 423
                 999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1127  (0.0628591); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3348.14
//
Query:       CCD24219.1  [L=864]
Description: hypothetical protein NDAI_0C05600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-92  308.1   7.5    7.6e-92  308.1   7.5    1.5  2  BRO1            BRO1-like domain
    1.9e-21   76.6  12.0    4.4e-21   75.5  12.0    1.6  1  ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
  ------ inclusion threshold ------
       0.41   10.5   9.0       0.32   10.9   6.6    2.1  2  Phage_Mu_Gam    Bacteriophage Mu Gam like protein


Domain annotation for each model (and alignments):
>> BRO1  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.1   7.5   1.3e-95   7.6e-92       2     389 .]       6     386 ..       5     386 .. 0.91
   2 ?   -3.9   0.1      0.77   4.6e+03     140     313 ..     551     576 ..     527     587 .. 0.55

  Alignments for each domain:
  == domain 1  score: 308.1 bits;  conditional E-value: 1.3e-95
                 XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXX.....XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX. CS
        BRO1   2 lsiplKkteekevdlkkpLknyIsetygsqdpeafedd..laelnklRqdavrksankdsesglelllkYyaqLellelrfpieeqslkveFtWydaf. 97 
                 + +++K+te  ++d+kk L+ny++++ygs++++ f d+    +l++lR++  +++     es le+ l+Yya Le l++r+ +++++l+++F Wyda  
  CCD24219.1   6 IDLKVKDTE--PIDWKKGLSNYLKRSYGSKNWKHFYDEkiAIKLDHLRHN-SNGELA--PESLLEQNLRYYAFLEHLDQRLANNSSQLRMDFVWYDAQy 99 
                 788999995..5***********************99997789******9.666553..4788******************9955579*********** PP

                 ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1  98 ...ssskkvtqsslafEkasvLFniaalysqlaasqnrstdeglkrackyfqqAAgvfqylkenflhapteeesedlspetlkaLeklmlAqAqecfle 193
                     +++k++q++l fEk+s+LFnia+++sq a++   ++    k a+ y+++A  +f+y++enfl++p    s+dl++e  ++L +l++ +Aqe+fl+
  CCD24219.1 100 pltPRDQKYKQHTLTFEKSSTLFNIAVILSQAANDVCDKD---DKLAIGYLSRATACFNYISENFLNSP----STDLQAENAQFLANLCHVEAQELFLQ 191
                 **966899*************************9964444...49************************....************************** PP

                 XXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1 194 kaik...dnkkdsliaKlaaqvaelYeealealkkselidekeevlkklldksWikhvqvKashfkAlaqyrqalaaeeakkyGeeiarlqkAlellke 289
                 k ++    +k++sli+Kla+ ++ lY++  ++lk  e   e       + +++W++++++K++++k+++ y+ al++e++ kyG++ia+l+ A++ +++
  CCD24219.1 192 KLLNgpaPEKQASLISKLASAASGLYDKTSNYLKVPE---E---RIIPYGESKWTSILTCKMYVYKSVTAYHYALHLEQEGKYGQAIAYLKLASRSITS 284
                 **9978669************************4333...2...23345899*********************************************** PP

                 XX...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX.XXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHH CS
        BRO1 290 alkskkaeelledlkglkdvveeklkeaekDNdlIYheevPsesslpeikkaslvkaiplee.eke.eekseesgkdlFakLvPlsvheaasayserka 386
                     k+  +   d++g+kd++e+k ke+ekDNd+IYh+++Ps+ sl++ik+++++k  ++e+  k+ +e ++++ + l++++vP++++e+ s+yse+ka
  CCD24219.1 285 SFPFKVWLKDFIDFEGFKDTIETKTKEMEKDNDYIYHDTIPSSVSLESIKPIDAIKCPSWEQqLKSyMETTASDTDSLYKGIVPMEIYEKESIYSEEKA 383
                 *655554444679********************************************99955566668889999999********************** PP

                 HHH CS
        BRO1 387 klv 389
                 +++
  CCD24219.1 384 QML 386
                 986 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.77
                 XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXX CS
        BRO1 140 rackyfqqAAgvfqylkenflhapteeesedlspetlkaLeklmlAqAqecflekaikdnkkdsliaKlaaqvaelYeealealkkselidekeevlkk 238
                 r +k  +++A ++  lke                                                                                 
  CCD24219.1 551 RKLKVVKKSAEALRVLKE--------------------------------------------------------------------------------- 568
                 444444444444444444................................................................................. PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXX CS
        BRO1 239 lldksWikhvqvKashfkAlaqyrqalaaeeakkyGeeiarlqkAlellkealkskkaeelledlkglkdvveek 313
                                                                                     +++  ++
  CCD24219.1 569 -------------------------------------------------------------------ERQRTLSE 576
                 ...................................................................33333333 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5  12.0   7.3e-25   4.4e-21      83     285 ..     486     702 ..     475     704 .. 0.82

  Alignments for each domain:
  == domain 1  score: 75.5 bits;  conditional E-value: 7.3e-25
  ALIX_LYPXL_bnd  83 kyreileeAsesDkivrqklqenkedlelLsgpeeeleaa....lpssssa.......aasesveeqirklrsllekldelkaereqllkdlkek 166
                     k++  l eAs+sD+++   ++ + e+++lL++ +    ++    l+s++++       +++e+  ++++ +++  e l  lk+er+++l++lke+
      CCD24219.1 486 KLKASLVEASKSDEKLFFLVKPYMEEIKLLNNANLLWSKFntfdLSSQNQPslldiddKKTETILRKLKVVKKSAEALRVLKEERQRTLSELKEA 580
                     688999************************76444444444434555555567665433377777788888899999****************** PP

  ALIX_LYPXL_bnd 167 aendDitpklltekkrdiaanefealfeeelekydplqeqleqslakqeellkeiqeaneefeqskksdseq.....sqrqreevlqkleaaydk 256
                     + +dDit+ l+ +k +  + +e + +f++e+ek++pl +++e+++ kq ++++ei+ a ++  +    ++++       ++r e++ +le+a + 
      CCD24219.1 581 VNEDDITSLLIGNKDK--SDAELKLVFNDEMEKFKPLSTRIEATIFKQASIINEIKLALDDVFSLTGIQDKSseernADKKRIEFVDRLEKATNN 673
                     *************999..67899********************************9776666554433333221124599999************ PP

  ALIX_LYPXL_bnd 257 ykelksnleeglkFYndltelleklqkkv 285
                     +   +s++++g+ FY++l +l ++l +++
      CCD24219.1 674 FTIFVSDIQKGIGFYSSLLKLSKDLASSA 702
                     ********************999987765 PP

>> Phage_Mu_Gam  Bacteriophage Mu Gam like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.97   5.8e+03     104     122 ..     296     315 ..     251     316 .. 0.78
   2 ?   10.9   6.6   5.3e-05      0.32       2     129 ..     453     578 ..     452     613 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.97
                   HHHCT-GCC----.----HH CS
  Phage_Mu_Gam 104 lkelgfkefIkvk.eevnke 122
                   +   gfk++I +k +e +k+
    CCD24219.1 296 IDFEGFKDTIETKtKEMEKD 315
                   44568899998887777775 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 5.3e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH-..-----EE-SS-EE---------.--TT--. CS
  Phage_Mu_Gam   2 eeanwalrkiaelkreleeieaeaneeiaaikekleaeleplkkeieylesllkqYaeankdeLfkdgktKslklpfGkvgfrkstpkvkkrdkek. 97 
                   +++++++r i  +++e+  i   + ++ ++   kl+a+l +  k+ e+l  l+k Y+e+ k  L +++     k+ +  ++  ++++ + + d++k 
    CCD24219.1 453 NDVDKVIRDISFMRQEILDILVTLPSQEKENSLKLKASLVEASKSDEKLFFLVKPYMEEIK--LLNNANLLWSKFNTFDLSSQNQPSLL-DIDDKKt 546
                   6899*********************************************************..8999999999*******988888886.5555556 PP

                   HHHHHHHHHCT-.GCC--------HHHH..... CS
  Phage_Mu_Gam  98 eelLealkelgf.kefIkvkeevnkeaLkkkvk 129
                   e++L++lk  +   e+++v +e  ++ L +++k
    CCD24219.1 547 ETILRKLKVVKKsAEALRVLKEERQRTL-SELK 578
                   ********44443788877655555554.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       849  (0.0473534); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 6154.92
//
Query:       CCD24220.1  [L=279]
Description: hypothetical protein NDAI_0C05610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-92  308.2   2.1    3.1e-92  307.9   2.1    1.0  1  MBA1             MBA1-like protein
  ------ inclusion threshold ------
      0.031   12.9   0.2      0.044   12.5   0.2    1.3  1  Glyco_transf_20  Glycosyltransferase family 20
       0.12   12.5   0.0        0.2   11.7   0.0    1.3  1  Tim44            Tim44-like domain


Domain annotation for each model (and alignments):
>> MBA1  MBA1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.9   2.1   5.2e-96   3.1e-92       4     234 ..      41     274 ..      38     275 .. 0.97

  Alignments for each domain:
  == domain 1  score: 307.9 bits;  conditional E-value: 5.2e-96
        MBA1   4 qkkiqqlnikhlgvaaelyvptsy..lkspftspkvwvkllirrlyllglNtvqvalfrlqtglkpsflewknkAietyvkvNkafAareleqleelvs 100
                  +k ++++++ +g+a+++y+p+sy   ++p+ +p++ +++lirr+y +g Ntv+valfr+q+g+kp+fl+wkn+Aie yv+vNkafA r+++ +++l+s
  CCD24220.1  41 VEKPKEIDPRVIGIANDIYIPASYknYPNPIFHPVTCFNALIRRVYYFGQNTVNVALFRFQAGIKPNFLLWKNNAIEIYVQVNKAFADRKVNIIKPLTS 139
                 57899********************************************************************************************** PP

        MBA1 101 lwvkeaLkarakqlPdnvkldwelikfnsvPKlvslqalmipgkplelvqlvyrfdtkQklikvdkksskvekldrdvvdyiaflldattnellLvGsv 199
                 +wv+eaL+ar+kqlP+ +kl+w+l+kfn+vPKl+++q++mipg+ple+vqlvy+f+tkQ lik dkk++ +e  +rdvvdyi f +++tt ++ ++Gsv
  CCD24220.1 140 IWVDEALEARVKQLPKAIKLNWKLVKFNEVPKLMNVQPMMIPGRPLEFVQLVYKFNTKQELIKYDKKTDLTENITRDVVDYISFFCNSTTGDMTIMGSV 238
                 *************************************************************************************************** PP

        MBA1 200 feskvdaklPkktet.dsqvviqrmkskgdifrapp 234
                 fe k+d+klPk+ ++ d++ +i++mk  gd++r  p
  CCD24220.1 239 FENKPDDKLPKRVLSdDNKGAIRNMKIHGDLYRLNP 274
                 **********99875167889************876 PP

>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.2   7.3e-06     0.044     109     148 ..     104     143 ..      22     147 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7.3e-06
                      ....G----HHHHHHHHHHHHHHHHHHHCC--TT-EEEEE CS
  Glyco_transf_20 109 dsseekefersawdaYvkvnklFAdkiveeikdgdliwvh 148
                       +++    +++a + Yv+vnk+FAd+ v++ik+   iwv 
       CCD24220.1 104 IKPNFLLWKNNAIEIYVQVNKAFADRKVNIIKPLTSIWVD 143
                      55555567789999************************96 PP

>> Tim44  Tim44-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.4e-05       0.2      21     115 ..     112     212 ..     104     230 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.4e-05
                 HHHHHHTHHHHHHHHHHT-HHHHHHHB-HHHHHHHHHHHHHH.HH....TT-EE--EEEEEEEEEEEEEEEE.TTEEEEEEEEEEEEE-EE-TTS.-EE CS
       Tim44  21 leeakeayepileayakgDletLrkllteevyeefkaeiker.ak....qgltldaellgirevdlkeakie.gdtavltvrfrtqqisvtddatGevv 113
                  ++a e+y+++++a+a++ ++ +++l++  v e+++a +k+  ++    ++l++ +e+ ++ +v+  ++     +  +l+ +f t+q  +++d++  + 
  CCD24220.1 112 KNNAIEIYVQVNKAFADRKVNIIKPLTSIWVDEALEARVKQLpKAiklnWKLVKFNEVPKLMNVQPMMIPGRpLEFVQLVYKFNTKQELIKYDKKTDLT 210
                 567889*******************99999999999999887443222266888888888888888877777778889999999999999666665666 PP

                 EE CS
       Tim44 114 eG 115
                 e 
  CCD24220.1 211 EN 212
                 65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2005.34
//
Query:       CCD24221.1  [L=545]
Description: hypothetical protein NDAI_0C05620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.028   14.3   0.1      0.081   12.9   0.1    1.8  1  Ribosomal_L19  Ribosomal protein L19


Domain annotation for each model (and alignments):
>> Ribosomal_L19  Ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.5e-06     0.081      46      96 ..     365     415 ..     360     431 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.5e-06
  Ribosomal_L19  46 iarkgkgisetftvRkisegvgvervfplhspkiekievvrrgkvrrakLy 96 
                    i+ ++k+ ++tft+ + + g  +e+ +pl s  i++i+v+++    +  ++
     CCD24221.1 365 IELSNKNRNSTFTLLEPAVGKKIEKRIPLSSLDINTITVIKEAVTDQEDIF 415
                    66789999********************************99877776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3959.29
//
Query:       CCD24222.1  [L=560]
Description: hypothetical protein NDAI_0C05630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-32  111.0   0.0      4e-32  110.1   0.0    1.5  1  Radical_SAM_C    Radical_SAM C-terminal domain
    2.7e-17   63.7   0.4    1.3e-16   61.4   0.0    2.2  3  Radical_SAM      Radical SAM superfamily
    1.5e-10   41.4   0.1    2.7e-10   40.5   0.1    1.4  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.5e-06   28.1   0.0    3.4e-06   27.0   0.0    1.6  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.013   15.9   0.1      0.027   14.9   0.1    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
       0.16   12.2   0.1       0.62   10.2   0.0    2.1  2  HTH_28           Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Radical_SAM_C  Radical_SAM C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0   1.4e-35     4e-32       2      81 ..     322     401 ..     321     402 .. 0.98

  Alignments for each domain:
  == domain 1  score: 110.1 bits;  conditional E-value: 1.4e-35
  Radical_SAM_C   2 dgvKlypllvikgTeLaelyksgeykplsleeyvdlvadilellppdirvhRltgdipkelliagpwhknlreliekrlk 81 
                    dg+K+yp+lvi+gT+L+el+ksg+yk+++ + +vdlva+i++l+pp++r++R+++dip++l+ +g+ ++nlrel+++r+k
     CCD24222.1 322 DGLKIYPTLVIRGTGLYELWKSGKYKSYNSNALVDLVARIMALVPPWTRIYRVQRDIPMPLVTSGVDNGNLRELALARMK 401
                    9******************************************************************************7 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   4.4e-20   1.3e-16       9     158 ..     116     304 ..     105     313 .. 0.84
   2 ?   -1.6   0.0         1     3e+03      76     115 ..     376     423 ..     351     469 .. 0.70
   3 ?   -2.3   0.0       1.7     5e+03      31      63 ..     513     544 ..     509     549 .. 0.55

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 4.4e-20
                  S--TTTSCCTT...................HHHHHHHHHHHHHHHHHHHHHHHHHTT.SEEEEEESSTGGGSTTHHHHHHHHHHTC............ CS
                  xxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx............ RF
  Radical_SAM   9 lrCsfCarpet...................vrregrgrslsveeileevkelkaekg.vkevilgggepllypdfvellerlakla............ 74 
                  + C++C+ + +                     r ++  + + +  +e++k+l ++ + v++v++gg   +l  d+ e+     ++a            
   CCD24222.1 116 NICVYCPGGPDsdfeyssqsytgyeptsmrAIRARYDPYEQARGRVEQLKQLGHSIDkVEYVVMGGTFMSLPNDYREDFITKLHNAlsgfngndldea 213
                  34*************************777444444444444444444444446777588888888888888888888777777779*********** PP

                  .....CCTEEEEEEECSSCHG...HHHHHHHHHTT-SEEEEEEBSSSHHHHHHHHTCTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHH CS
                  .....xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  75 .....vpgiritvetngtlpd...eeklerllelgvdrvslgleaaddekvlklmnrghtfeevlealeklreagikrvvdrivglpGende 158
                        +  +++ +t +t+pd     +l+ +l++g++r+++g++++ ++ v + +nrght+++v e + + ++ag k+v+++++ lp++ +e
   CCD24222.1 214 ikysqQSLTKCVGITIETRPDyctQTHLDDMLRYGCTRLEIGVQSLYED-VARDTNRGHTVKAVAEIFAISKDAGYKVVSHMMPDLPNVGME 304
                  *****9999999999999999999*************************.**********************************99999875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1
                  CTEEEEEEECSSCHG...HHHHHHHHHTT.....-SEEEEEEBSSSHH CS
                  xxxxxxxxxxxxxxx...xxxxxxxxxxx.....xxxxxxxxxxxxxx RF
  Radical_SAM  76 pgiritvetngtlpd...eeklerllelg.....vdrvslgleaadde 115
                  ++i + ++t+g+      e  l+r+++lg     + + ++g++ ++ +
   CCD24222.1 376 RDIPMPLVTSGVDNGnlrELALARMKDLGtscrdIRTREVGIQEVHHK 423
                  566666777777744776777888888886666666666666666655 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.7
                  HHHHHHHHHHHHHHTT..SEEEEEESSTGGGSTTH CS
                  xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxx RF
  Radical_SAM  31 veeileevkelkaekg..vkevilgggepllypdf 63 
                  +ee +++++e    +g  +  vi+g g  ++y+++
   CCD24222.1 513 MEEAERIAREE---HGseKISVISGVGVRNYYAKL 544
                  45555555555...442266666666666666655 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1   8.9e-14   2.7e-10       2     117 .]     408     546 ..     407     546 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 8.9e-14
                     HHHHHHHHHHTHHHHHHHHHHH...HHHHHHSTTCEEEE...EEETTE...EEEEEEEEEEET........TSTTEEEEEEEEE........... CS
  Acetyltransf_1   2 rdlvellvesffppnedaseee...feesfsleaegllv...aeedge...liGfisllkipd........ekggvayieslaV........... 68 
                     rd+++ +v +++ +++  +  +   ++++    a+g++     +ed++   liG ++l+k           +++++ ++++l+V           
      CCD24222.1 408 RDIRTREVGIQEVHHKVQPDQVeliRRDY---YANGGWEtflSYEDPKkdiLIGLLRLRKASKkytyrkefTSQRTSIVRELHVygsvvplhsrd 499
                     67788888888866666666665557777...6665555443555544577********************999********************5 PP

                     SGGGTTSSHHHHHHHHHHHHHHHT.TESEE.EEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  69 speyrgkGlGsaLlealeeraree.gikki.vlaveedndaairlYeklGF 117
                      ++++++G G++L+e++e++aree g +ki v+    + ++ +++Y klG+
      CCD24222.1 500 PRKFQHQGFGTLLMEEAERIAREEhGSEKIsVI----SGVGVRNYYAKLGY 546
                     5566********************888***555....89999****99**8 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.1e-09   3.4e-06      62     111 ..     502     551 ..     500     556 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.1e-09
  Acetyltransf_10  62 eyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkavge 111
                      ++++qG g+ L+e++e+ a++++++++++v +    +++Y klG++  g+
       CCD24222.1 502 KFQHQGFGTLLMEEAERIAREEHGSEKISVISGVGVRNYYAKLGYELDGP 551
                      89****************99888888*******************98775 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.1   9.2e-06     0.027      35      75 ..     502     547 ..     483     548 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.2e-06
                     GGTTSSHHHHHHHH.....TT.SEEE.EEEEEETHH...HHHHHHHHTTEE CS
  Acetyltransf_7  35 eyrgkGiGraLlea.....ae.kgii.leqlelnae...kaikfYeklGFe 75 
                     +++ +G G+ L+e      +e +g + +    +        +++Y+klG+e
      CCD24222.1 502 KFQHQGFGTLLMEEaeriaREeHGSEkI---SV--IsgvGVRNYYAKLGYE 547
                     79**********9535443114441111...11..02224577*******8 PP

>> HTH_28  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00021      0.62      10      33 ..     268     291 ..     262     293 .. 0.85
   2 ?   -3.4   0.0       3.8   1.1e+04      22      41 ..     422     442 ..     421     444 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
      HTH_28  10 aaGhsvreaArelgisrrtvyrWi 33 
                  +Gh+v+++A+++ is +  y+ +
  CCD24222.1 268 NRGHTVKAVAEIFAISKDAGYKVV 291
                 58**************99999876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.8
      HTH_28  22 lgisrrtvyrWikryee.gGi 41 
                 + + +++v   ++ y + gG+
  CCD24222.1 422 HKVQPDQVELIRRDYYAnGGW 442
                 566688999999999986666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4175.88
//
Query:       CCD24223.1  [L=321]
Description: hypothetical protein NDAI_0C05640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-86  288.9  16.1    4.1e-86  288.7  16.1    1.0  1  Ceramidase  Ceramidase
  ------ inclusion threshold ------
        3.1    7.9   5.7       0.93    9.6   0.6    2.6  2  DUF2892     Protein of unknown function (DUF2892)


Domain annotation for each model (and alignments):
>> Ceramidase  Ceramidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.7  16.1   4.6e-90   4.1e-86       1     263 []      14     287 ..      14     287 .. 0.98

  Alignments for each domain:
  == domain 1  score: 288.7 bits;  conditional E-value: 4.6e-90
  Ceramidase   1 gyWgpvtStidwCEenYvvtpyiAEfvNTlsnllfillallgiynaakkklekrfllaylglalvGlgSalFHaTLkyetQllDelsmiyatalvlyav 99 
                 gyWg+vtStidwCEenYvv++y+AE+ NT+sn+++++++++ +y++++++le rf+l+ +g+ +vG+gS+lFH+TL+y +QllDel+m ya++++++++
  CCD24223.1  14 GYWGNVTSTIDWCEENYVVSYYVAEWSNTISNIVYLMTTFYSTYCTYRNSLEFRFYLIGAGYGIVGVGSWLFHMTLQYRFQLLDELPMNYAMSIPVWSL 112
                 8************************************************************************************************** PP

  Ceramidase 100 fse...............kksrstrvllgvlltalavvvtllylvlkepvlhqvafalltvlvllrsiyliekkvdksdeaakkevkklallgliifll 183
                 +se               ++s+++++l g l+++++ +vt++yl +k++ +h+v+f++l+vlv+++s +l+++++   d + kk++++ ++lg+++fl+
  CCD24223.1 113 VSEaideirsikdrkekkEQSHKDEILTGSLIFLTISIVTWIYLKSKDTDVHEVLFGVLVVLVAISSGLLTHNHT--IDYDMKKNLYSAMALGVVFFLS 209
                 *************9999888899************************************************8777..799******************* PP

  Ceramidase 184 gfliWnlDnlfCstltrlrra.iglplgvllelHgwWHiltgigayilivlleylrvekkgkedselelawpsrlgvlPev 263
                 gf+ W lD ++C++++ lrr+ + lplg++lelHgwWH ltg+g+y+++v+l+ylrv ++g+ + +++++w  r++++Pe+
  CCD24223.1 210 GFTAWKLDIHYCNFWIYLRRNvLALPLGMFLELHGWWHALTGVGIYYYLVYLQYLRVITTGTYG-KYKFIW--RWKIFPEL 287
                 *******************9989****************************************8.8*****..89999985 PP

>> DUF2892  Protein of unknown function (DUF2892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6    0.0001      0.93      15      51 ..     167     214 ..     163     214 .. 0.81
   2 ?   -0.9   0.5      0.19   1.7e+03      22      41 ..     236     252 ..     231     257 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0001
     DUF2892  15 vvGlvllllallglsggw...........gwllglvGavllltgltgf 51 
                 ++G++++l+a+ ++               ++ + ++G+v++l+g+t +
  CCD24223.1 167 LFGVLVVLVAISSGLLTHnhtidydmkknLYSAMALGVVFFLSGFTAW 214
                 66777777777666554477789****9999***************88 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.19
     DUF2892  22 llallglsggwgwllglvGa 41 
                 l+ +l l+g+w    +l G+
  CCD24223.1 236 LGMFLELHGWW---HALTGV 252
                 55666666555...555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1032  (0.0575604); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2634.92
//
Query:       CCD24224.1  [L=429]
Description: hypothetical protein NDAI_0C05650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-21   73.7   0.0      1e-20   73.0   0.0    1.4  1  SRF-TF    SRF-type transcription factor (DNA-binding and dime


Domain annotation for each model (and alignments):
>> SRF-TF  SRF-type transcription factor (DNA-binding and dimerisation domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   5.6e-25     1e-20       2      48 .]      11      57 ..      10      57 .. 0.96

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 5.6e-25
      SRF-TF  2 IeneraRqvtFsKRrnGLfKKAsELsvLcgvevavvvfspngklytf 48
                Ie e++R+vtF KR++GLfKKA+EL+vLc+v+va++v + n+  +++
  CCD24224.1 11 IEEEKNRSVTFAKRKAGLFKKAHELAVLCQVDVALIVLGANNAYHQY 57
                9**************************************99998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 3518.90
//
Query:       CCD24225.1  [L=174]
Description: hypothetical protein NDAI_0C05660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      5e-22   78.2   0.1    1.2e-21   76.9   0.1    1.7  1  Ribosomal_S6e  Ribosomal protein S6e


Domain annotation for each model (and alignments):
>> Ribosomal_S6e  Ribosomal protein S6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.1     7e-26   1.2e-21      62     125 .]       1      64 [.       1      64 [. 0.99

  Alignments for each domain:
  == domain 1  score: 76.9 bits;  conditional E-value: 7e-26
                    B-TTS-SSSEEEEEEETTSSSS-SSSSS-EEEEEEE-SB--SSEEEEEEEEEE--SS--TTTSS CS
  Ribosomal_S6e  62 mkqgvltpgrvrlLlskggvgyrprrkGerkrksvrGcivsadisqlnlvivkkgekdiegltd 125
                    mkqgvl p+rv+lLl+kg ++yrprr GerkrksvrG iv  d+++l+lvi+kkge++ eg+td
     CCD24225.1   1 MKQGVLLPTRVKLLLAKGVSCYRPRRAGERKRKSVRGAIVGPDLAVLSLVITKKGEQEFEGVTD 64 
                    9*************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1288  (0.0718389); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1343.41
//
Query:       CCD24226.1  [L=500]
Description: hypothetical protein NDAI_0C05670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-48  165.6  25.3    1.4e-48  165.6  25.3    2.1  2  MFS_1     Major Facilitator Superfamily
    7.3e-20   71.2   6.3    7.3e-20   71.2   6.3    2.8  2  Sugar_tr  Sugar (and other) transporter
    0.00061   19.2   5.9    0.00061   19.2   5.9    2.3  2  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
       0.23   11.1   0.0       0.23   11.1   0.0    4.3  4  TauE      Sulfite exporter TauE/SafE


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.6  25.3   3.1e-52   1.4e-48       4     352 ..      41     455 ..      38     456 .. 0.82
   2 !   15.1  14.7   1.9e-06    0.0083      67     173 ..     382     490 ..     381     500 .] 0.78

  Alignments for each domain:
  == domain 1  score: 165.6 bits;  conditional E-value: 3.1e-52
       MFS_1   4 aaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslwlllvlrvlqGlgaga 101
                 ++fl  ++ +i++palp +l++++ ++ ++i+  +++++++++v+ l++G ++d  Gr+ ++++++ +++++ ++l+ + s++ +l+++rv+q++g+++
  CCD24226.1  41 IGFLGPMSGNIYIPALP-LLQNEFKVNSTTINATVSVFMAVFSVGPLFWGLFADFGGRKILYIISISIMIAANVILAAVpSHIGALFAMRVVQAFGSSS 138
                 68999************.9***********************************777777************666663435555*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.Wravfyilaivsllafvlfllll.....................peeppe 178
                 ++++ga  ++d++p+++rg+ai+++++g ++G++++p+++gl++  +  Wr++f + ai+s +++  ++++l                           
  CCD24226.1 139 VITLGAGTVTDITPPKHRGKAIAYFMMGPNIGPVIAPIIAGLILMKGDyWRWLFGFTAIMSGIGLFAIIIFLpetlrcivgnydprwrkteylA----- 232
                 ********************************************66667***************665555557777777555555544443330..... PP

       MFS_1 179 rkrkspkeee............................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllply 233
                                                                        ++ +++l++ w++++ +pvl  + ++  l f+ ++++++ +  y
  CCD24226.1 233 ---------VttekvedielvseqpttrrpswpffsdiglqkprstsdefktryPKPPKTGLKTYWQLIKCPPVLI-ASVSTSLLFTNYYAFSVSFAHY 321
                 .........1555555566666677777788888888888888888888866555566666666*********885.555555556689999999999* PP

       MFS_1 234 lqevlglsglllaglllallalvgailallagrlsdr.............lgrrrrlllallllllaalglallavtssavllll.vlvliGf.glgfv 317
                 l  +++ls  l +g+ +  +++ +++++ ++g lsd              ++ + rl+l ++++l+ ++g++ ++++ s + +l+ +l++ G+ ++g++
  CCD24226.1 322 LARDYHLS-PLKIGACYVCPGISMLVGSQVGGHLSDYlrsrwlkrheaetFPLEYRLVLHIFGILMNTAGCIGFGFSISFHYHLAlILMFSGLmAFGMT 419
                 ********.8***************************77777666666655559999999999999999999999996666666655666777788888 PP

       MFS_1 318 ..fpsllalasdlappeeagtasglfntagslggalg 352
                   + + ++++++l+ +++a++ ++l ++++++g+a++
  CCD24226.1 420 wcSNTTMTYLTELM-TNKAAATIALSSFFRNVGAAIS 455
                 66666667777777.499999*************997 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 1.9e-06
       MFS_1  67 lglllfalglllll.fa...sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaiv 160
                 +g+l+  +g ++++ f+   + +  l+l +  l+++g+ +   + +++++++ +  + +  i+l s + ++Ga++  ++   l+++ g  ++f+ l++v
  CCD24226.1 382 FGILMNTAG-CIGFgFSisfHYHLaLILMFSGLMAFGMTWCSNTTMTYLTELMTN-KAAATIALSSFFRNVGAAISSAIIITLCDQMGVGWCFMGLGLV 478
                 778888888.444446534555554777777789999988888888888888887.899999************************************* PP

       MFS_1 161 sllafvlfllllp 173
                  ++++vl+ ++l 
  CCD24226.1 479 NIMSLVLI-IYLI 490
                 ****9963.3433 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   6.3   1.6e-23   7.3e-20      44     201 ..      66     220 ..       6     255 .. 0.85
   2 ?   -2.9  18.6      0.53   2.4e+03      80     188 ..     381     489 ..     297     493 .. 0.76

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 1.6e-23
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                  s+++ ++vs+f+++  +G lf gl++d+ GRk  ++i++ ++++++v+ aa +  +++ +l+++Rv+  +g   + +l   ++  i+p+k+Rg+ + +
  CCD24226.1  66 NSTTINATVSVFMAVFSVGPLFWGLFADFGGRKILYIISISIMIAANVILAAVP--SHIGALFAMRVVQAFGSSSVITLGAGTVTDITPPKHRGKAIAY 162
                 4677889***********************************************..89***************************************** PP

                 HHHHHHHHHHHHHHH.HHHHHTSS-TTHHHHHHHCCHHHHHH.HHHHGGGS---HHHHHHT CS
    Sugar_tr 143 yqlaitfGilvaaif.glglnktsnadgwrillglqlvpall.llilllflPESPrylvek 201
                 + ++  +G ++a i+ gl+l k ++   wr+l+g++++++ + l+++++flPE+ r  v +
  CCD24226.1 163 FMMGPNIGPVIAPIIaGLILMKGDY---WRWLFGFTAIMSGIgLFAIIIFLPETLRCIVGN 220
                 ************7762666699988...********999877266677******7766655 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.53
                 HHHHHHHHHHHHHHH-TTTT.SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHH.HHC CS
    Sugar_tr  80 liaavlfvigavlqaaakgk.nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwril.lgl 176
                 ++++++  +g +  +++ +   ++ ++++   l+ +g+ ++s+++ +y+ E+ + +++ a + l  ++  +G  +++ +   l +  + +gw+++ lgl
  CCD24226.1 381 IFGILMNTAGCIGFGFSISFhYHLALILMFSGLMAFGMTWCSNTTMTYLTELMT-NKAAATIALSSFFRNVGAAISSAIIITLCDQMG-VGWCFMgLGL 477
                 456667777777777777444566777777999999999999999999999965.555677889999999998888888888844444.5999886888 PP

                 CHHHHHHHHHHG CS
    Sugar_tr 177 qlvpallllill 188
                   +++l+l+i l
  CCD24226.1 478 VNIMSLVLIIYL 489
                 888887777765 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   5.9   1.4e-07   0.00061      12     171 ..      52     212 ..      49     224 .. 0.86
   2 ?   -0.1   4.3       0.1   4.5e+02      89     166 ..     409     487 ..     369     499 .. 0.47

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.4e-07
       MFS_4  12 ytpiLPallaegqlslsqagllaaaNylGYLvGalla.afalsagaeRlr.llagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvla 108
                 y p LP l +e +++ + +    ++ ++ + vG l+  +fa + g++ l  + ++++ + + ++  a+++++ a++++R++   +s  v+ +g+ +v  
  CCD24226.1  52 YIPALPLLQNEFKVNSTTINATVSVFMAVFSVGPLFWgLFADFGGRKILYiISISIMIA-ANVILAAVPSHIGALFAMRVVQAFGSSSVITLGAGTVTD 149
                 88999999999999999988888888888889988752456666666666444444444.444555799****************************** PP

       MFS_4 109 haaaarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllvalllpr 171
                  + ++ r++ +a +  G+ +G +++ +++ l+l +g  + +l   +a++s + l ++++ lp+
  CCD24226.1 150 ITPPKHRGKAIAYFMMGPNIGPVIAPIIAGLILMKGDYWRWLFGFTAIMSGIGLFAIIIFLPE 212
                 ****************************************9999*************999994 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.1
       MFS_4  89 flaGvasAvvlvfgsslvlaha.....aaarrervgallfaGvGlGiavsgllvllllqlglsasslWlalavlsavllllva 166
                 + +G+  A+ +   s++ +  +     ++a + + ++ +f  vG+ i  s+++++l  q+g+++    ++l+++ ++ l+l++
  CCD24226.1 409 MFSGLM-AFGMTWCSNTTMTYLtelmtNKAAATIALSSFFRNVGAAIS-SAIIITLCDQMGVGWC--FMGLGLVNIMSLVLII 487
                 334443.34444444433332200000224444555666766666442.4444445555555544..3444444433333333 PP

>> TauE  Sulfite exporter TauE/SafE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  13.9    0.0033        15     130     217 ..      32     135 ..      22     151 .. 0.69
   2 ?   -0.6   5.8      0.18   8.3e+02      27     108 ..     125     204 ..     117     256 .. 0.70
   3 ?   11.1   0.0   5.1e-05      0.23     165     223 ..     301     365 ..     290     367 .. 0.69
   4 ?    3.6  10.5    0.0099        44     137     197 ..     409     475 ..     378     493 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0033
        TauE 130 ligglvGllsGllGiGgGfllvpllllll...glplkkavatslllilvislag.algyal.........agavdwpllll...llpgallGallGarl 212
                 ++ +++ ++ G+lG   G + +p+l ll+   +++ ++++at +++++v+s+   ++g+++           ++++++++    +++++ +Gal+++r+
  CCD24226.1  32 FLIFAIVIYIGFLGPMSGNIYIPALPLLQnefKVNSTTINATVSVFMAVFSVGPlFWGLFAdfggrkilyIISISIMIAANvilAAVPSHIGALFAMRV 130
                 333669999******************998777777778888888666666554144443355555544434444433332445788888999999998 PP

        TauE 213 arrls 217
                 ++ + 
  CCD24226.1 131 VQAFG 135
                 88765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.18
        TauE  27 Lllllppavavatsllavvatslsgalahrrr..gnvdwrlllllllgsliGallGallllllpsellkllfgvlllllallml 108
                 L++ +  ++a ++s ++ +   ++  ++  ++  +++ + ++ + + + ++ +++G +l++   +++ ++lfg+  +++++ ++
  CCD24226.1 125 LFA-MRVVQAFGSSSVITLGAGTVTDITPPKHrgKAIAYFMMGPNIGPVIAPIIAGLILMK---GDYWRWLFGFTAIMSGIGLF 204
                 333.367788988887766666665444433321477777777777777777777777755...77779999998888887664 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 5.1e-05
        TauE 165 avatslllilvislagalgyalagavdwpllll......llpgallGallGarlarrlsertlrr 223
                 +v tsll++   +++  ++++la +++++ l +       ++ +l+G+++G +l+ +l  r+l+r
  CCD24226.1 301 SVSTSLLFTNYYAFSVSFAHYLARDYHLSPLKIgacyvcPGISMLVGSQVGGHLSDYLRSRWLKR 365
                 56677776655555555555554444433333334564666679******************997 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.0099
        TauE 137 llsGllGiGgGfllvpllllllglplkkavatslllilvislagalgyal......agavdwpllll 197
                 ++sGl+  G+      ++++l+ l + ka+at +l +++ ++ +a++ a+      +  v w +++l
  CCD24226.1 409 MFSGLMAFGMTWCSNTTMTYLTELMTNKAAATIALSSFFRNVGAAISSAIiitlcdQMGVGWCFMGL 475
                 689********************************************86555666644444544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       825  (0.0460148); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3638.59
//
Query:       CCD24227.1  [L=647]
Description: hypothetical protein NDAI_0C05680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-49  165.9   0.1    6.9e-49  165.9   0.1    2.7  3  NOG1_N        NOG1 N-terminal helical domain
    8.4e-27   92.9   1.7    2.3e-26   91.5   1.7    1.8  1  NOGCT         NOGCT (NUC087) domain
    5.9e-26   90.0   0.3    1.8e-25   88.5   0.3    1.9  1  NOG1          Nucleolar GTP-binding protein 1 (NOG1)
    1.9e-16   60.2   0.0    6.1e-16   58.5   0.0    1.9  2  MMR_HSR1      50S ribosome-binding GTPase
      1e-07   31.6   0.0    2.3e-07   30.5   0.0    1.6  1  FeoB_N        Ferrous iron transport protein B
     0.0002   21.3   0.3       0.18   11.7   0.1    3.5  4  RsgA_GTPase   RsgA GTPase
    0.00093   18.6   0.0     0.0026   17.1   0.0    1.8  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
  ------ inclusion threshold ------
       0.01   15.9   0.1          3    7.9   0.0    3.2  3  Dynamin_N     Dynamin family
      0.013   15.9   0.0        0.3   11.4   0.0    2.6  2  AAA_16        AAA ATPase domain
      0.088   13.0   0.0       0.46   10.7   0.0    2.3  2  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.27   11.3   1.6        1.7    8.7   0.1    2.7  3  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain


Domain annotation for each model (and alignments):
>> NOG1_N  NOG1 N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9   0.1   4.3e-52   6.9e-49       2     160 .]       6     164 ..       5     164 .. 0.99
   2 ?    1.0   0.3      0.23   3.7e+02      93     148 ..     485     540 ..     482     550 .. 0.71
   3 ?   -3.3   0.4       4.9   7.9e+03      19      37 ..     600     618 ..     596     629 .. 0.54

  Alignments for each domain:
  == domain 1  score: 165.9 bits;  conditional E-value: 4.3e-52
      NOG1_N   2 ekiptvptseelidkalrrakraakttkkkkneikrlrnlearkvrtasntlsdkLeeivkkfPnldelhpFyrelldvlvdkdelkksLaqvkwarkl 100
                 + iptv ++++l+d  l+r++r+++t+ + + +i r+r +++rkv+++ + + +k+ +i+k fPn++++hpF+r+l+d+l++k+++k+sLa+v+ a++l
  CCD24227.1   6 KDIPTVAPANDLLDIVLNRTQRKTPTVIRPGFKITRIRAFYMRKVKFTGEGFVEKFDDIIKGFPNINDVHPFHRDLMDTLYEKNHYKISLAAVSRAKSL 104
                 78************************************************************************************************* PP

      NOG1_N 101 irkigkeyvnklkkaddkkeakelrreafgrvasvlkkvdkaldfLedvrkkLrkLpaiD 160
                 +++++++y+++lk ++++ ++k+l+r+a+gr+a+++kk ++ l++Le+vr+++ +Lp+iD
  CCD24227.1 105 VEQVARDYIRLLKFGQSLFQCKQLKRAALGRMATIVKKLKDPLAYLEQVRQHIGRLPSID 164
                 ***********************************************************9 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.23
      NOG1_N  93 qvkwarklirkigkeyvnklkkaddkkeakelrreafgrvasvlkkvdkaldfLed 148
                 +v+ ++++++ i++++ +++++a++ k +k+       ++++ + k++++++ L +
  CCD24227.1 485 EVDDIKSKANWIRNRQKTMIAEARNRKSLKNKAIMPRSKLSKSFGKMEEHMATLGH 540
                 57888999999999999999999998877766655555666666666666666554 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.9
      NOG1_N  19 rrakraakttkkkkneikr 37 
                 ++a r++k  ++++n+++r
  CCD24227.1 600 SKADRIQKLQRRERNRMAR 618
                 4555555555555444433 PP

>> NOGCT  NOGCT (NUC087) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   1.7   1.4e-29   2.3e-26       1      54 []     396     449 ..     396     449 .. 0.99

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 1.4e-29
       NOGCT   1 rklerdleeenggagvYsvdlkkkYllkndewkyDiiPEildGkNvaDFidpdI 54 
                 rkl+r++e+enggagv++++lk+kYll++dewk+D++PEildGkNv+DF+dp+I
  CCD24227.1 396 RKLAREIEAENGGAGVFNINLKDKYLLEDDEWKNDVMPEILDGKNVYDFLDPEI 449
                 89***************************************************9 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.3   1.1e-28   1.8e-25       1      58 []     234     291 ..     234     291 .. 0.99

  Alignments for each domain:
  == domain 1  score: 88.5 bits;  conditional E-value: 1.1e-28
        NOG1   1 eIEkqAiaALkhladavlFllDpseecgysleeQlsLleeikelfankpvivvlnKiD 58 
                 +IE+q+i A++hl+++vl+++D+se+cg+++e Q++L+++ik+lfank v+vv+nK+D
  CCD24227.1 234 NIEMQSIYAIAHLRSCVLYFMDISEQCGFTIEAQVKLFHSIKPLFANKSVMVVINKTD 291
                 5*******************************************************99 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   3.8e-19   6.1e-16       3     114 .]     171     289 ..     169     289 .. 0.73
   2 ?   -3.0   0.0       4.5   7.3e+03      52      81 ..     311     342 ..     307     367 .. 0.43

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 3.8e-19
                 EEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS..HHHHHHHHHHHHHHHHCT.SEEEEEEETTTT...CSHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGlie..gaseekglgkaflaleea.dlillvvdasee...klkplde 95 
                 +i G+pNvGKS++++ +t++ ++v+ +++tT+    g++++k  +++ +DtpG+++  +++ ++ + +++ a+    + +l+ +d+se+   +++++  
  CCD24227.1 171 LICGYPNVGKSSFLRCITKADVEVQPYAFTTKSLYVGHFDYKYLRFQAIDTPGILDrpTEEMNNIEMQSIYAIAHLrSCVLYFMDISEQcgfTIEAQ-- 267
                 799*************************************999**********88633333333444555554443289******994443333333.. PP

                 HHHHHHHH.....TTSEEEEEEES CS
    MMR_HSR1  96 eleellee.....akkplilvlnk 114
                  ++ +  +     a+k +++v+nk
  CCD24227.1 268 -VKLFH-SikplfANKSVMVVINK 289
                 .33222.12346788889999987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 4.5
                 ECGGCSSHHHHHHHHHHHHHHHHC..T.SEEEE CS
    MMR_HSR1  52 DtpGliegaseekglgkaflalee..a.dlill 81 
                  tpG +e   ++  l++++ ++++  + +l++ 
  CCD24227.1 311 ETPG-VEVMTSSCHLEENVMEVRNkaCeKLLAS 342
                 5777.5422222234444444333222222322 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.4e-10   2.3e-07       3     153 ..     170     332 ..     168     335 .. 0.74

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.4e-10
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSS.SSSSHHHHHHHHHHHCTSSSEEEEEEEGG.....GHHHHH CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYsl.sayseeekvardflleeepdvvvnvvdat.....nlernL 95 
                 + ++G pnvGk++++  +t+a+ +v  ++ +t     g++++k  +++ +D PGi +  ++  ++ ++   + + +   +v+  +d +     ++e ++
  CCD24227.1 170 LLICGYPNVGKSSFLRCITKADVEVQPYAFTTKSLYVGHFDYKYLRFQAIDTPGILDRpTEEMNNIEMQSIYAIAHLRSCVLYFMDISeqcgfTIEAQV 268
                 6789***************************************************87632222233333444456667778877775422222578888 PP

                 HHHHHHHHT..TSSEEEEEETHHHHHHTTEEE-HHHHHHHH....TS-EEEEBTTTTBTHHHHH CS
      FeoB_N  96 yLtlqllel..gvpvvlalnmideaekkgieidlkkLsekL....gvpvvktsakkkegieell 153
                  L+  +  l  +++v++++n++d ++ + ++ + ++L +++    gv+v++ s + +e++ e++
  CCD24227.1 269 KLFHSIKPLfaNKSVMVVINKTDIIRPEDLDEERATLLKSIyetpGVEVMTSSCHLEENVMEVR 332
                 88777655422899999********999988887766555433336777777777777777766 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.012        19      99     126 ..     167     193 ..     129     226 .. 0.80
   2 !   11.7   0.1   0.00011      0.18      48      97 ..     282     335 ..     277     341 .. 0.87
   3 ?   -2.7   0.0         3   4.9e+03      60      91 ..     546     577 ..     540     589 .. 0.74
   4 ?   -1.4   0.0       1.2   1.9e+03     103     113 ..     634     644 ..     617     646 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.012
                  TSEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelk 126
                   +t +++G   vGKS+++  ++   +++
   CCD24227.1 167 TRTLLICGYPNVGKSSFLRCITKA-DVE 193
                  48999*************999876.444 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
                  EEEEEEE-GGG--HHH....HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  48 epvivlnKiDlleeee....eleelkeelealgyevllvsaktkegleelkell 97 
                  ++++v+nK+D++  e+    +++ lk+ +e+ g+ev++ s + +e++ e++++ 
   CCD24227.1 282 SVMVVINKTDIIRPEDldeeRATLLKSIYETPGVEVMTSSCHLEENVMEVRNKA 335
                  689*********999988877888999***************999999998875 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3
                  -HHHHHHHHHHHHHHTTSEEEE--TTTHTTHH CS
  RsgA_GTPase  60 eeeeeleelkeelealgyevllvsaktkegle 91 
                  ++++++ + k+++ + g +v++ +++  ++++
   CCD24227.1 546 QDKQSMAARKNRYVESGADVVFGDQEGAASIN 577
                  45556999999999999999998777555554 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1.2
                  EEECSTTSSHH CS
  RsgA_GTPase 103 vlvGqSGvGKS 113
                  ++ G+ GvGK+
   CCD24227.1 634 LFSGKRGVGKT 644
                  799*******7 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.6e-06    0.0026       2     131 ..     170     300 ..     169     330 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.6e-06
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGq.eafveeylssqkeeifrnvg...vliyVfDvesreleedle 96 
                 +L++G  + GK+s  + i +  +  +     +t ++   ++  ++ l ++ +D +G  ++  ee+ + + ++i+        ++y +D++ +++  ++e
  CCD24227.1 170 LLICGYPNVGKSSFLRCITKADVEVQPY-AFTTKSLYVGHF-DYKYLRFQAIDTPGIlDRPTEEMNNIEMQSIYAIAHlrsCVLYFMDIS-EQCGFTIE 265
                 7899999999999988886655444433.345667777777.47899*********824556665555666665544344589******9.889999** PP

   Gtr1_RagA  97 tlkeilealrqyspeakvfvlihKmDliqederee 131
                   +++++ ++    + +v v i+K+D i+ +  +e
  CCD24227.1 266 AQVKLFHSIKPLFANKSVMVVINKTDIIRPEDLDE 300
                 ****************************8543322 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.021        35       2      32 ..     171     201 ..     170     208 .. 0.79
   2 ?    7.9   0.0    0.0019         3     106     167 ..     219     289 ..     202     290 .. 0.82
   3 ?   -2.9   0.0       3.9   6.3e+03      53      85 ..     596     622 ..     566     633 .. 0.55

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.021
                 EEEEBTTTTHHHHHHHHHTS--S---SSS-- CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpnptT 32 
                 +++G  + GKSS+l  ++++d+ +     tT
  CCD24227.1 171 LICGYPNVGKSSFLRCITKADVEVQPYAFTT 201
                 6899999**********99998665555555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0019
                 EE---B-SSSGTTS.....HHHHHHHSTTEEEEEEEETTS..-CCC-CHHHHHHHHSTTBTT..EEEEEE- CS
   Dynamin_N 106 vDlPGldsvnkrdq.....elvkeyikkadiilavtsanh..dlsnsealflarevdpkgkr..tivvltk 167
                 +D+PG+ +++++++     + +  +++ ++ +l+ ++ +    ++   + +l ++++p   +  ++vv++k
  CCD24227.1 219 IDTPGILDRPTEEMnniemQSIYAIAHLRSCVLYFMDISEqcGFTIEAQVKLFHSIKPLFANksVMVVINK 289
                 9*************9996666666669999*****999873457888888999999998777778888887 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 3.9
                 SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS CS
   Dynamin_N  53 eelkekekkledfsevreeieketekiagankg 85 
                  ++++k+      +++++ +++e+++ a+++++
  CCD24227.1 596 GSMRSKA------DRIQKLQRRERNRMARQGES 622
                 3444444......44444444444444443333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019       0.3       9      47 ..     150     190 ..     148     217 .. 0.85
   2 ?    1.3   0.0      0.25   4.1e+02      28      38 ..     634     644 ..     608     645 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
      AAA_16   9 leqLlsalervrsgrp..elvllsGesGvGKsslvrellra 47 
                 leq+++ ++r+ s +p  + +l+ G++ vGKss +r++ +a
  CCD24227.1 150 LEQVRQHIGRLPSIDPntRTLLICGYPNVGKSSFLRCITKA 190
                 688889999888888888*******************9974 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.25
      AAA_16  28 llsGesGvGKs 38 
                 l+sG +GvGK+
  CCD24227.1 634 LFSGKRGVGKT 644
                 799*******9 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00028      0.46       2     119 ..     170     291 ..     169     292 .. 0.69
   2 ?   -2.0   0.1       2.4     4e+03       3      14 ..     634     645 ..     632     646 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00028
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-S.....GGCTTT..T-HHHH..CTSCEEEEEEE..G CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaG.....qerfrs..lhplyl..reaalailvyd..s 89 
                 ++++G  +vGK+s+l+ +++ +++ +  +     f+tk++  + +     + k ++++  Dt G      e++++  ++++y   + ++++++++d  +
  CCD24227.1 170 LLICGYPNVGKSSFLRCITKADVEVQPYA-----FTTKSLY-VGH----FDYKYLRFQAIDTPGildrpTEEMNNieMQSIYAiaHLRSCVLYFMDisE 258
                 6899**************99998766544.....4444442.222....23567899999999976666688886446788873334567777778532 PP

                 HHH...HCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  90 rss...enlkeWlkelkkvagkspvilvgnkiD 119
                 +     e   + ++++k    ++ v++v+nk+D
  CCD24227.1 259 QCGftiEAQVKLFHSIKPLFANKSVMVVINKTD 291
                 2222224445788889999999*********99 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.4
                 EEESSTTSSHHH CS
         Roc   3 vlvGdsgvGKts 14 
                 ++ G+ gvGKt 
  CCD24227.1 634 LFSGKRGVGKTD 645
                 6779******95 PP

>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.6   5.9e+03      44      63 ..      80      99 ..      78     111 .. 0.78
   2 ?    8.7   0.1     0.001       1.7      57     103 ..     282     338 ..     229     340 .. 0.80
   3 ?    0.2   0.0      0.47   7.6e+02      61      90 ..     357     385 ..     342     391 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.6
  MMR_HSR1_Xtn 44 dlidviegnrvYipclyvlN 63
                  dl+d++ +++ Y+ +l ++ 
    CCD24227.1 80 DLMDTLYEKNHYKISLAAVS 99
                  78899988888888887765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.001
  MMR_HSR1_Xtn  57 pclyvlNKiDlisleeldelare..........pnsvviSaekelnldeLkekiwee 103
                    +++v+NK+D i+ e+lde + +           +++  S++ e n+ e+ +k  e+
    CCD24227.1 282 SVMVVINKTDIIRPEDLDEERATllksiyetpgVEVMTSSCHLEENVMEVRNKACEK 338
                   6799**********9999866656667777755488889999999998888876665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.47
  MMR_HSR1_Xtn  61 vlNKiDlisleeldelarepnsvviSaeke 90 
                   vlNKi  ++ +  d+++r+p  ++ S++++
    CCD24227.1 357 VLNKIHVAQPQARDDIQRTP-FIPDSVKNN 385
                   56666666666666666653.444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1071  (0.0597356); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.41
# Mc/sec: 4753.84
//
Query:       CCD24228.1  [L=871]
Description: hypothetical protein NDAI_0C05690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-17   63.6   0.4    2.2e-17   63.6   0.4    2.6  3  Dynamin_N  Dynamin family
    8.8e-10   38.7   0.1      5e-09   36.2   0.1    2.3  1  MMR_HSR1   50S ribosome-binding GTPase
    5.5e-09   35.8   0.3    9.2e-06   25.3   0.1    2.5  2  GTP_EFTU   Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.045   13.5   0.4          7    6.4   0.1    2.8  3  PduV-EutP  Ethanolamine utilisation - propanediol utilisation
      0.046   13.8   2.4       0.31   11.1   0.1    2.9  2  DUF2730    Protein of unknown function (DUF2730)
      0.057   13.0   0.2       0.38   10.3   0.2    2.1  2  cobW       CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.3   6.9e+03     147     167 ..     113     133 ..     109     134 .. 0.82
   2 !   63.6   0.4   7.3e-21   2.2e-17       1     166 [.     202     382 ..     202     384 .. 0.82
   3 ?   -2.9   0.2         2     6e+03      73      86 ..     504     517 ..     489     555 .. 0.50

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.3
                 HHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 147 alflarevdpkgkrtivvltk 167
                 ++ l+++ d++++r i+v+++
  CCD24228.1 113 RDILHELEDENDTRPIFVIHN 133
                 5678899999****9999976 PP

  == domain 2  score: 63.6 bits;  conditional E-value: 7.3e-21
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEE...............CCT---CCS...SSEEEE.T-EB--CHHHHHHHHHHHHHHHT.S CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelql...............geeeeaseravkeelkek.ekkledfsevreeieketekiag.a 82 
                 + + G+++ GKS++ n+Ll++++lp ++ p+T  ++e+                 ++ +++++++v +++k++ + +++ ++e+ e +ek+ + +    
  CCD24228.1 202 VFITGDVNTGKSTFCNSLLKKHVLPEDQLPCTNVFCEILEarensnieevhaillSQAPTVKDANVVYNIKNRtTYEIYPLNELSELVEKSDRYSLLkV 300
                 5689**********************************99777777777777777777777799999999999888999*******9999999876212 PP

                 SSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTTSHHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE CS
   Dynamin_N  83 nkgiskkvillkilsllvkgltlvDlPGldsvnkrdqelvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvlt 166
                   +++k++   + l     +++l+D+PGl+    +  + v+   ++ d++++v++a+++l+ s ++f+  + ++k+  +++v++
  CCD24228.1 301 YIKDDKRPAEQSLLRNGTVDISLIDSPGLNMDSIQT-AEVMARQEEIDLVIFVVNAENQLTLSAKEFITLASREKK-LMFFVVK 382
                 2334456***********************988887.55666669****************999999877666655.5555555 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2
                 HHHHHHHHTSSSS- CS
   Dynamin_N  73 eketekiagankgi 86 
                 ++e+++i++++k+ 
  CCD24228.1 504 QDEQNEIKKKLKEL 517
                 22222222222222 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.7e-12     5e-09       1     114 []     201     383 ..     201     383 .. 0.86

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.7e-12
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE.................................................... CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke.................................................... 47 
                 +v i G  N+GKSt+ n+l+++++  +d+  +T    e+ ++ ++++                                                    
  CCD24228.1 201 KVFITGDVNTGKSTFCNSLLKKHVLPEDQLPCTNVFCEI-LEARENSnieevhaillsqaptvkdanvvyniknrttyeiyplnelselveksdrysll 298
                 589*******************99999999999988666.3322322467888999999999999999999999************************* PP

                 ......................EEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  48 ......................ielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                                       i l+D pG +++  ++ + ++ +++ ee dl+++vv+a+ ++l+   +e+  l +++kk +++v++k
  CCD24228.1 299 kvyikddkrpaeqsllrngtvdISLIDSPG-LNM--DSIQTAEVMARQEEIDLVIFVVNAE-NQLTLSAKEFITLASREKKLMFFVVKK 383
                 ******************************.652..34466777777788*********87.668888889999988888889989876 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00062       1.9       6      26 ..     202     222 ..     199     229 .. 0.88
   2 !   25.3   0.1   3.1e-09   9.2e-06      70     178 ..     319     424 ..     300     549 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00062
                 EEEEESTTSSHHHHHHHHHHH CS
    GTP_EFTU   6 igiighvDhGKtTLtdrLlyk 26 
                 + i g+v++GK+T++ +Ll+k
  CCD24228.1 202 VFITGDVNTGKSTFCNSLLKK 222
                 789***************986 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 3.1e-09
                 EEEEEEEESSSGG...GHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST..HHHHHHHHHHHHHHHHHH........HH CS
    GTP_EFTU  70 ylinliDtPGHvd...FskevirglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrl..kaelkeiveevkqklsrk........ee 155
                   i+liD+PG       + ev +  + +D++++vv a++  +   +e + la++e+  +++++ K D++  k+++k+++ +  q+ls +          
  CCD24228.1 319 VDISLIDSPGLNMdsiQTAEVMARQEEIDLVIFVVNAENQLTLSAKEFITLASREKKLMFFVVKKFDKIkdKDRCKKLILKQIQELSPEtyksanefI- 416
                 6799******64424567888888999******************************************88555554443333355222222232330. PP

                 HHHHHHHTTTTTEEEEEEBTTTT CS
    GTP_EFTU 156 klekygekgekevpvvfgSalkg 178
                                 f+S+++ 
  CCD24228.1 417 ---------------HFISSYDD 424
                 ...............33333333 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.011        34       2      24 ..     200     222 ..     199     227 .. 0.87
   2 ?    6.4   0.1    0.0023         7      39     109 ..     322     394 ..     316     427 .. 0.83
   3 ?   -3.7   0.0       3.1   9.3e+03      46      85 ..     622     661 ..     621     665 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.011
   PduV-EutP   2 kkilliGkvgsGKttLtqalkge 24 
                 +k+++ G v++GK t +++l ++
  CCD24228.1 200 SKVFITGDVNTGKSTFCNSLLKK 222
                 699**************999765 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0023
   PduV-EutP  39 eviDtPGeylenrklysalivtsaeadvialvqdateeesvfppgfasvfnke...viGiitkidlaedeenie 109
                 ++iD+PG  +++ +  +++ +   e d++ +v++a+++ ++ +++f ++ ++e   +  ++ k d+ +d+++ +
  CCD24228.1 322 SLIDSPGLNMDSIQTAEVM-ARQEEIDLVIFVVNAENQLTLSAKEFITLASREkklMFFVVKKFDKIKDKDRCK 394
                 579****999999776655.56789*********************9988765443678999999999888765 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.1
   PduV-EutP  46 eylenrklysalivtsaeadvialvqdateeesvfppgfa 85 
                 +++ nr++ s l+ t  +   i  + +  +   +f+p++ 
  CCD24228.1 622 DFMSNRQFNSELMFTRRSDVTIRQLSSPLHIVDLFAPSWE 661
                 6899999999998887665566666666666667766655 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.3      0.15   4.6e+02      62      99 ..     504     541 ..     465     544 .. 0.73
   2 ?   11.1   0.1    0.0001      0.31      21      84 ..     777     837 ..     760     844 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.15
     DUF2730  62 akdlekLkllladlrgelkaleaevrqlshqvdLLLen 99 
                 +++ +++k++l++l+ el +++ + +++   vd L+e+
  CCD24228.1 504 QDEQNEIKKKLKELEPELVEAKSHCNNVTLNVDKLVED 541
                 45667888888888888888888888888888888876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0001
     DUF2730  21 illlldskYakredleklaekveendkrlteletkvenLPtakdlekLkllladlrgelkalea 84 
                 + l ++skY     le+l + +++n  r+++   +v ++Pt++ l + +l + + +g+ ++le+
  CCD24228.1 777 LPLNISSKYK--TKLENL-DYIRNNSDRISKEVRNVLKIPTREILRSCQLVMDKKEGNKRELER 837
                 5677899995..557788.99*************************************999986 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.31   9.4e+02       4      23 ..     203     222 ..     201     251 .. 0.89
   2 ?   10.3   0.2   0.00013      0.38      70     168 ..     307     403 ..     280     409 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.31
                 EEEESTTCCHHHHHHHHHCT CS
        cobW   4 vltGflGsGKTtLlnhllen 23 
                  +tG + +GK+t+ n+ll++
  CCD24228.1 203 FITGDVNTGKSTFCNSLLKK 222
                 6999999*********9965 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHTT-SEEEEEECT.TTTHHHHHTTSHHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEEEE-HHHHCHC..HHHH.HHHH CS
        cobW  70 lkelealeereerldviliEttG.laePapvafteeelksdltldavvavvDaknleaeeekieekaedqlaaadllvlnKtDlldeeallekl.eerl 166
                  ++ ++l+++   +d+ li + G +++  +    +e ++++ ++d v++vv+a+n  + + k+  ++ +  ++  ++v+ K D +++++  +kl  +++
  CCD24228.1 307 RPAEQSLLRNG-TVDISLIDSPGlNMDSIQT---AEVMARQEEIDLVIFVVNAENQLTLSAKEFITLASREKKLMFFVVKKFDKIKDKDRCKKLiLKQI 401
                 44445555555.899999*****66666666...899999*************998777777777788888888899*********9955444314455 PP

                 HH CS
        cobW 167 rq 168
                 ++
  CCD24228.1 402 QE 403
                 55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1032  (0.0575604); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 6343.39
//
Query:       CCD24229.1  [L=201]
Description: hypothetical protein NDAI_0C05700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-14   51.0  12.9      9e-09   34.7   1.9    3.2  2  Hexapep    Bacterial transferase hexapeptide (six repeats)
    9.9e-13   47.6  15.1    2.1e-09   37.0   0.5    3.1  3  Hexapep_2  Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   3.6   1.7e-07    0.0016       3      35 ..      81     115 ..      79     116 .. 0.88
   2 !   34.7   1.9     1e-12     9e-09       2      36 .]     134     168 ..     133     168 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.7e-07
                 EEETTEEE-TTEEEE..TTEEE-TTEEEETTEEEE CS
     Hexapep   3 vIGsnvlIgpfavig..gnVkIGdnvkIgagvvig 35 
                 ++G+nv+I +++++   g+++IGd++ Ig+++v++
  CCD24229.1  81 TVGKNVFINAGCKFQdqGGITIGDGCLIGHNAVLA 115
                 79************64489*************986 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 1e-12
                 EEEETTEEE-TTEEEETTEEE-TTEEEETTEEEES CS
     Hexapep   2 tvIGsnvlIgpfaviggnVkIGdnvkIgagvvigg 36 
                 +v+++nv++g++++i ++V+IG+n+++ ag+v+++
  CCD24229.1 134 IVLEENVWLGANVTIIPGVHIGKNSVVSAGAVVTK 168
                 6899*****************************86 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   3.7   2.1e-07    0.0019       2      32 ..      80     114 ..      79     116 .. 0.89
   2 !   37.0   0.5   2.3e-13   2.1e-09       1      34 []     133     168 ..     133     168 .. 0.93
   3 ?   -2.0   0.1      0.34   3.1e+03      12      18 ..     172     179 ..     172     180 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.1e-07
                 EEE-TT-EE-TT-EE....SEEE-TT-EE-TT-EE CS
   Hexapep_2   2 viIGdnCliGanagi....GvslGdncvvgaGvvi 32 
                 +++G+n++i a +      G+++Gd+c +g + v+
  CCD24229.1  80 ITVGKNVFINAGCKFqdqgGITIGDGCLIGHNAVL 114
                 79*******88888678989**********99887 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 2.3e-13
                 .EEE-TT-EE-TT-EE..SEEE-TT-EE-TT-EE-S CS
   Hexapep_2   1 pviIGdnCliGanagi..GvslGdncvvgaGvvita 34 
                 p+  ++n+ +Gan +i  Gv++G+n+vv+aG v+t+
  CCD24229.1 133 PIVLEENVWLGANVTIipGVHIGKNSVVSAGAVVTK 168
                 7889*********9966******************7 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.34
                 TT-EE.SE CS
   Hexapep_2  12 anagi.Gv 18 
                 an+++ Gv
  CCD24229.1 172 ANSIVvGV 179
                 79995598 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1466.22
//
Query:       CCD24230.1  [L=452]
Description: hypothetical protein NDAI_0C05710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-27   96.9   0.0    3.6e-27   95.7   0.0    1.6  2  Abhydrolase_1  alpha/beta hydrolase fold
    3.4e-12   46.1   0.0    1.7e-11   43.8   0.0    1.9  1  Hydrolase_4    Serine aminopeptidase, S33
    1.8e-05   25.5   0.0    3.4e-05   24.6   0.0    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family
     0.0095   15.1   0.0      0.016   14.3   0.0    1.3  1  ORC3_N         Origin recognition complex (ORC) subunit 3 N-t
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.023   14.7   0.0    1.3  1  Cutinase       Cutinase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.57     2e+03     163     190 ..      96     131 ..      56     148 .. 0.73
   2 !   95.7   0.0   9.9e-31   3.6e-27       1     255 [.     166     429 ..     166     431 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.57
                    H........HCHHHCCHHHHHHHCHHHHHHHHHHHH CS
  Abhydrolase_1 163 f........pdkskrfpssgsdnasslatgalksie 190
                    +        +d+++ +++ +++ ++ +a +++ +++
     CCD24230.1  96 EfsdkgvctADWVMPAWETKYQLNKETASFDKVNFN 131
                    045566666899999999999988888877766655 PP

  == domain 2  score: 95.7 bits;  conditional E-value: 9.9e-31
                    SEEEEE-STTTCGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHH. CS
  Abhydrolase_1   1 pvlvilhGlpgssdvwaerglapaLakd.gfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaey. 94 
                    p++v++hGl+g+s+ ++ r+l ++L ++ +f+v++l+ rG+++S+   +   + ++t+++++++++  ++++++k++ vG+S+G ++ ++y+ e  
     CCD24230.1 166 PLVVCCHGLAGGSHEPIIRSLTQNLTRSgRFEVVVLNTRGCARSKITTRNLFTAFHTMDLREFVNKEHAKTPNRKIYAVGFSFGATMLANYLGEEg 261
                    78******************************************98888777******************************************** PP

                    .GGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHHHHHHHH CS
  Abhydrolase_1  95 .perVkalvllgaidpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnasslatgalksi 189
                     + ++ a + l+       ++  q  +  s+  +  +++ ++ +  + + +   +a le++   +  +    ++k++   ++++++  + ++ ++i
     CCD24230.1 262 eKTPITAAAVLCN-----PWDMVQSGIKTSDDFWTKNIFSKKIVDFLTRVVKVNMAELEVPEGSKPDH--TPTVKNPSYYTFTRSNLEKGKDFQYI 350
                    *999999998888.....8*********************************************9999..999999999999999*********** PP

                    HHHHHCCHHHHHHHHHC............THHHHSEEEEEEETTCSSSCH.HHHHHHHHCHTSEEEEEEETCSSSHHHH CS
  Abhydrolase_1 190 eqwpttdsaklllrlre............lknvlaptlvisgtsDplvpp.kaledlaqllpkkrlvvisdagHlafle 255
                    + +++ ++a+ l++               l ++++p lv+ +t+Dp+v      +   +  ++ +l+  + +gHla+l+
     CCD24230.1 351 SDFDDIFTAPALGFKSAleyyaaagsihrLPDIKVPLLVMNSTDDPVVGSdPIPDHVIDSNKHLLLCETDIGGHLAYLD 429
                    **********999988899*********9999***************97633333444444457777777788887776 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   4.8e-15   1.7e-11       3     207 ..     164     400 ..     162     414 .. 0.74

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 4.8e-15
  Hydrolase_4   3 pkavvvlvHGla..ehsgryaelaeaLaaqG.favyalDhrGhGrse.gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyl.. 94 
                   + +vv +HGla  +h      l+++L++ G f+v+ l+ rG  rs+   r  ++ f++   Dl++fv+k  ++ p+++++ +G S G+++ ++yl  
   CCD24230.1 164 DRPLVVCCHGLAggSHEPIIRSLTQNLTRSGrFEVVVLNTRGCARSKiTTRNLFTAFHT--MDLREFVNKEHAKTPNRKIYAVGFSFGATMLANYLge 259
                  5789******962267778999********989*************8877777777766..5**********************************65 PP

  Hydrolase_4  95 lrypd..kva.glilsaPalkikakl..........k.appllklllkllgkllpklqv................snnlkadslsrdpevvaayeadp 162
                  +   +   ++ +++l++P+  +++ +             ++++ +l ++++  + +l+v                      + l + ++++   + d 
   CCD24230.1 260 E--GEktPITaAAVLCNPWDMVQSGIktsddfwtknIfSKKIVDFLTRVVKVNMAELEVpegskpdhtptvknpsYYTFTRSNLEKGKDFQYISDFDD 355
                  2..33345666*******99999888777777766534555666666666666666666999999999777543211222233334444444444455 PP

  Hydrolase_4 163 lv.hgkitvrlllelldamkrleeraakitlPllllhGeaDkvvdp 207
                  +    ++  + +le + a+ +++ r ++i++Pll++ +++D+vv  
   CCD24230.1 356 IFtAPALGFKSALEYYAAAGSIH-RLPDIKVPLLVMNSTDDPVVGS 400
                  55566666666666666666665.678899*************975 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   9.4e-09   3.4e-05       1     214 [.     168     431 ..     168     435 .. 0.49

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 9.4e-09
                    EEEE--GC.....GCHHHH.HHHHCCT.CEEEEE--TTSTS-....GGCS--HHHCHHHHHHHCCTT....TTSEEEEEETCHHHHHHHHHHCC.. CS
  Abhydrolase_6   1 vlllHGagssassWlvapL.aallaag.vhvlapDlpGhGrs....dpppldledladlaalldelaa..gggpvvlvGHSlGGalalaaapla.. 86 
                    v+++HG+ ++++    ++L ++l ++g ++v+++  +G+ rs        +++    dl+++++++ a    +++++vG S+G+++ +    ++  
     CCD24230.1 168 VVCCHGLAGGSHEPIIRSLtQNLTRSGrFEVVVLNTRGCARSkittRNLFTAFHT-MDLREFVNKEHAktPNRKIYAVGFSFGATMLAN---YLge 259
                    89****6655555535566533333335888********6443221222233333.7779999999998878888********998888...6667 PP

                    .........EE..EEES-...........................................----TTTS----TTHHHHHHTT-C.......CCCH CS
  Abhydrolase_6  87 .......lvvg..vlldp.........................................pptalpagllaaalelllallallrl.......lawl 125
                              +  vl +p                                         p                ++  +   +       + + 
     CCD24230.1 260 egektpiT--AaaVLCNPwdmvqsgiktsddfwtknifskkivdfltrvvkvnmaelevP----------------EGSKP---DhtptvknPSY- 333
                    78999643..33699999887665555444444333333332222222222222111110................11111...01111122111. PP

                    CCH................S-HSCCCCHHHCCCCHCHCCCGHHHHCCHHCHTTCCHHTT-TTGCEEE.CTT-C.....HHHHCHHCCCH.STTEEE CS
  Abhydrolase_6 126 sre................plprlfladedadaawrarlarlaallaglgllpaaawadlpvpllvl.ggeDp.....lvprllerlla.qagarl 198
                      +                ++ ++++      a+     ++l  ++a+      ++++d+ vpllv+  ++Dp      +p+++ +    +  +++
     CCD24230.1 334 --YtftrsnlekgkdfqyiSDFDDIFT-----APALGFKSALEYYAAAGS---IHRLPDIKVPLLVMnSTDDPvvgsdPIPDHVIDSNKhLLLCET 419
                    ..0111111111111111112223333.....444444444444444444...8899999999988876777755544222222222223344555 PP

                    TCE...SSS-HHHHSH CS
  Abhydrolase_6 199 pvvlpgaGHlphleep 214
                     ++   +GHl +l+++
     CCD24230.1 420 -DI---GGHLAYLDKN 431
                    .55...6776666555 PP

>> ORC3_N  Origin recognition complex (ORC) subunit 3 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.5e-06     0.016      83     143 ..     165     224 ..     146     244 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 4.5e-06
                 --EEEEEBTT-GGGCHHHHHHHHHHHHHTTS-EEEEE-CCC-SSCHHHHHHHHHHHHHCCH CS
      ORC3_N  83 iptaalllGvNvddheetFesLtesLrksvtplvvlLqsrdckalkvalekllsqLmekee 143
                  p ++   G     he   +sLt++L++s +  vv+L+ r c+  k  ++ l++ + ++++
  CCD24230.1 165 RPLVVCCHGLAGGSHEPIIRSLTQNLTRSGRFEVVVLNTRGCARSKITTRNLFTAF-HTMD 224
                 56666667888899**************************************9999.3333 PP

>> Cutinase  Cutinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   6.3e-06     0.023      62     101 ..     222     261 ..     181     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.3e-06
                 HHHHHHHHHHHHHH-TT-EEEEEEETHHHHHHHHHHTT.. CS
    Cutinase  62 akeaaalvqslaskCPdtkivlgGYSqGaqvidnaiegga 101
                 ++++++ v++ ++k P+ ki ++G+S Ga++++n + +  
  CCD24230.1 222 TMDLREFVNKEHAKTPNRKIYAVGFSFGATMLANYLGEEG 261
                 5788999*************************99988733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.45
# Mc/sec: 2999.35
//
Query:       CCD24231.1  [L=76]
Description: hypothetical protein NDAI_0C05720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0098   16.8  10.4      0.018   15.9  10.4    1.4  1  PIG-Y          Phosphatidylinositol N-acetylglucosaminyltrans
  ------ inclusion threshold ------
       0.11   12.5   1.2       0.13   12.3   1.2    1.0  1  CoA_binding_3  CoA-binding domain


Domain annotation for each model (and alignments):
>> PIG-Y  Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9  10.4   2.1e-06     0.018       1      70 []       7      64 ..       7      64 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.1e-06
       PIG-Y  1 Gyallltsvllfivgmyavlfskllrlgeaplsppvladd...ryYcylvpllipvtlvfvianWvGlKfFrh 70
                G+++ll+++++ i +  ++l  +l   ++          d    yY + ++++ ++++v+ ++ W+   +Fr+
  CCD24231.1  7 GLIILLATWTITIGSGISFL--YL---RN----------DpskMYYLCWILISPTMFWVWTFIAWFNAEMFRN 64
                88999999999998888877..33...22..........2222699999999*******************97 PP

>> CoA_binding_3  CoA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.2   1.5e-05      0.13      17      76 ..       7      64 ..       2      69 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.5e-05
  CoA_binding_3 17 lllrvlsawllvllllallsfslkdafSRlwlaywavvglvllivsrllvravlrrlrrn 76
                    l+ +l++w++++++++ ++++ +++ S++  + w++++ ++  v+ +++ ++ + + rn
     CCD24231.1  7 GLIILLATWTITIGSGISFLYL-RNDPSKMYYLCWILISPTMFWVWTFIA-WFNAEMFRN 64
                   5666888999999888887776.5668**************999997554.666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 572.36
//
Query:       CCD24232.1  [L=459]
Description: hypothetical protein NDAI_0C05730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-75  253.1   0.0    5.3e-75  252.5   0.0    1.3  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)
  ------ inclusion threshold ------
        0.2   11.8   1.8       0.26   11.4   0.3    1.9  2  DUF1542       Domain of Unknown Function (DUF1542)


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.5   0.0   5.9e-79   5.3e-75       3     292 ..      49     361 ..      47     362 .. 0.97

  Alignments for each domain:
  == domain 1  score: 252.5 bits;  conditional E-value: 5.9e-79
                   HS--EEEEEEETSSS.-BGGGHHHHHHHHHHHHTTSEEEEEEEHHHHHTTTTT.-SSHHHHHHHHHHHHHH..HHHHHHHTCHTTT........... CS
  tRNA-synt_1b   3 erplrvysGidPTgk.lHlGylvplkklvelqkaghevffliaDlhAiigdps.kaeerklrkreevlena..ikaqlakgldpek........... 84 
                   ++++++y+G+dPT+k lHlG+lvpl++l++++  gh v++l++++++ +gdps + +er+ ++ + +++n+  i++ql +++++ k           
    CCD24232.1  49 NNKVKLYCGVDPTAKsLHLGNLVPLMVLLNFYVRGHSVVTLVGGATGRVGDPSgRITERSEMATDIRANNIeaISEQLVRFFKNGKkyyerknkhnt 145
                   6899*************************************************************999999************************** PP

                   .....EEEEETHHHHTTHHHHHHHHHHHTTCBHHHHHHHHHCCHHCSSSC--BHHHHHHHHHHHHHHHHTCHS....EEEEEGGGHHHHHHHHHHHH CS
  tRNA-synt_1b  85 .....aevvlqsewlehlelaellrdlgklgslnrmlqfksvkkrleegegislgeftYplLqaaDilllkad....lvpgGsDQkqnielgrdlar 172
                          +  +++w+++ +++++l++ g++++++ ml+++sv++rl+++ ++ ++eftY++Lqa+D+++l+++    +++gG+DQ++ni++g dl+ 
    CCD24232.1 146 vefgeHILKDNYSWWKEVKMLDFLAQYGRHIRVQAMLSRDSVTSRLANQGSLGFNEFTYQILQAYDFFHLYKEhnvsIQVGGNDQWGNITAGLDLIG 242
                   9998666888**************************************779**********************9*********************** PP

                   HHHHHSTTSS-EEEEET-BBSTTSSSBTTCETTCGC-BTTCCHHHHHHHHHHCHCSTTCSHHHHHHHHHTHHHCHHHHHHHHCCSEE.ESSHHHHHH CS
  tRNA-synt_1b 173 rfnkkevfkkpegltvplltgldGekKmSKSagnsaIfLddekesvkkkiqkavtdsdeevekllklktelsnelierleavsgkkp.kreaeella 268
                   r++ k++  + +++t+pll+ ++Ge K++KSagn a+f+d+e +++ + +q+++++ d+++ ++l+++t l+   i+ + a + ++p  r+ +++la
    CCD24232.1 243 RLEPKSKELPAFAVTTPLLSTANGE-KFGKSAGN-AVFIDPEINTPFEIFQFFYNTEDADIARFLQIFTLLPRGKIQSIVADHLRSPhLRKGQNILA 337
                   *****7777899*************.********.**************************************999999999999999********* PP

                   HHHCCCCHHHHHHHHHHHHHHHHH CS
  tRNA-synt_1b 269 eevtklvhggdlkkalaealnell 292
                   +evt+l+hg d+ ++++e++n l+
    CCD24232.1 338 KEVTELLHGVDASNEAEEVSNVLF 361
                   *******************99887 PP

>> DUF1542  Domain of Unknown Function (DUF1542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.1   9.8e+03      39      60 ..     337     358 ..     334     360 .. 0.74
   2 ?   11.4   0.3   2.9e-05      0.26       6      40 ..     381     415 ..     380     417 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.1
     DUF1542  39 naalneaiknInqattnddVdt 60 
                  ++++e +  +++ + +++V +
  CCD24232.1 337 AKEVTELLHGVDASNEAEEVSN 358
                 5677777788888888888876 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 2.9e-05
     DUF1542   6 kaaidkaaeekkaeInnnpnaTdeEKqaainkvna 40 
                 ka i + a++ ++ I+   ++T++ K aa+ k+ +
  CCD24232.1 381 KARILQHANKSENLIDLLARLTNDSKSAAKRKISQ 415
                 78899***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3630.48
//
Query:       CCD24233.1  [L=114]
Description: hypothetical protein NDAI_0C05740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-27   94.6  10.2    4.5e-27   94.2  10.2    1.1  1  Romo1     Reactive mitochondrial oxygen species modulator 1


Domain annotation for each model (and alignments):
>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2  10.2   2.5e-31   4.5e-27       1      66 []      14      79 ..      14      79 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 2.5e-31
       Romo1  1 scldkikmGalmGaaVGlaiGllfGtfsalryglrgrgllrtlgksmlgsaatFGfFmsiGsviRc 66
                s++ k+kmG++mG++VG+++G+lfG+f++ ++g++++g++rtlgk+++gsaatFG+FmsiGsviR+
  CCD24233.1 14 SNWAKFKMGLMMGSTVGVCTGVLFGGFAIATQGAGPDGVVRTLGKYIAGSAATFGLFMSIGSVIRS 79
                689**************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 854.57
//
Query:       CCD24234.1  [L=473]
Description: hypothetical protein NDAI_0C05750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-92  311.0   0.4    1.4e-92  310.7   0.4    1.1  1  PAXNEB    PAXNEB protein


Domain annotation for each model (and alignments):
>> PAXNEB  PAXNEB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.7   0.4   7.8e-97   1.4e-92       4     361 ..      94     456 ..      91     473 .] 0.88

  Alignments for each domain:
  == domain 1  score: 310.7 bits;  conditional E-value: 7.8e-97
      PAXNEB   4 pipGtrpSphdgqlltStGtpsLDklLgG.GLplGsillieEdgttdfakvLlkyFlAeGvvqkh............evlvlsldddpeewlreLPgpl 89 
                 ++pG+rpSp +++l+tStG+++LDk+L   GLplG+++l++E+gtt+f+++L+k+F+A+G+v+++            +++vlsl   ++ +++eLPg++
  CCD24234.1  94 NHPGIRPSPVSANLVTSTGSEDLDKVLTHlGLPLGNSILVQEQGTTEFNSILCKLFAAQGIVHNRldtvpgsksgntHLIVLSL---NQGFAKELPGVY 189
                 79*************************989******************************************************...************ PP

      PAXNEB  90 tdkeeekeqrkeekkaee.ek..............eendlkIAWRYek.elpkvqseqasastesekfghqFdltkrlesesls.eisftplddskkse 171
                    ++++++ k++ ++ee +k              +++d+kIAW+Y+  +++k+ ++ ++++te++ ++hqFd+t+r+ ++++s +i+f++        
  CCD24234.1 190 ---KGSRKDVKKSMISEEqSKlsvqnlneqkatpqRYKDFKIAWKYKFaDEKKAGKDISNNETEYKGYNHQFDVTSRMIPAPNSsDITFISPI------ 279
                 ...567777777777766555778889999999999**********874455555666778889*****************999666666655...... PP

      PAXNEB 172 eeekeslkespryssllnqiqqllkkesfsaptkknvlRivipsLlspllydyppeeskpedllkFLhsLrallr..ssnlvalitlplsliarssslv 268
                          +p ++++++q+++++k+    + +k  ++Ri+ipsLl+p++  ypp++ + + ++ +Lh+Lr++++  +s++v++ t++++ +  ++ l+
  CCD24234.1 280 ---------QP-LQNVITQVERTIKT----HDHK--LIRIIIPSLLHPAM--YPPKMFNLNGIIALLHGLRSIVKkfESRCVLMGTISSDFV--TPLLL 358
                 .........68.99***********9....7777..**************..9***************************************..***** PP

      PAXNEB 269 rkieqlvDtvieLesfag.seketepalks...eeyqGlLkihklpalnelavgmpetedlafklsrkkfvIekfhLPPelsese....ksksce.kes 358
                  +ie+l+D+ i+Le+f++ + + +e+++k+   + ++GlL++ klp+++e++    +++++af+++rk+f+Ie++++P+++ +++    +    e +++
  CCD24234.1 359 VQIENLFDSSIKLEPFPQeMLQFLENVYKAqpnKVQHGLLHVLKLPIFSERGEMRVAKSEWAFRNGRKRFEIEEWSIPVDDADDDsnkkN----EqSMN 453
                 *****************************99999******************55588*************************99955441....31222 PP

      PAXNEB 359 aks 361
                 + +
  CCD24234.1 454 RPE 456
                 221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3383.99
//
Query:       CCD24235.1  [L=314]
Description: hypothetical protein NDAI_0C05760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-90  302.2   0.0    3.3e-90  302.0   0.0    1.0  1  Pantoate_transf  Ketopantoate hydroxymethyltransferase
      0.002   17.7   0.0     0.0029   17.1   0.0    1.2  1  PEP_mutase       Phosphoenolpyruvate phosphomutase
  ------ inclusion threshold ------
      0.021   14.7   0.0      0.034   14.0   0.0    1.4  1  Asp_Glu_race     Asp/Glu/Hydantoin racemase


Domain annotation for each model (and alignments):
>> Pantoate_transf  Ketopantoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.0   0.0   5.5e-94   3.3e-90       2     258 ..      30     293 ..      29     294 .. 0.96

  Alignments for each domain:
  == domain 1  score: 302.0 bits;  conditional E-value: 5.5e-94
  Pantoate_transf   2 vtvkdlrkmkeegekiamlTaydattAklvdeagvdviLVGDslgmvvlgyestlpvtleemiyhtkaVargakralvvadlPfgsyeaskeqa 95 
                      +t+ d+++++++  +i+m Tayd +tA++++ea+ d+iLVGDsl+m+ lgy+st+++ ++e+ yh+k+V+r    +l+v+d+Pfgs+e+s    
       CCD24235.1  30 TTILDIQSKRSKDIPITMTTAYDSITASWCHEAQSDMILVGDSLAMTSLGYASTTDLPFDEFKYHVKSVCRVPGPSLIVVDMPFGSFESSIPFG 123
                      68999*******************************************************************8899****************** PP

  Pantoate_transf  96 lenAarllkeg.gadavKleggae.....vaetvkalveagipVmgHiGltPqsvnalggykvqgk.teeeaeklledakaleeaGafalvlEa 182
                      ++nA++l+k   +++++K+e g +     + +++ +l+++gipVmgHiGltPq++++lgg+kvqg+ + ee ++lle+ak l++ G++++++E+
       CCD24235.1 124 ISNAIELMKLDsNVTSLKVEVGLHtkdkyTPKLIGELCARGIPVMGHIGLTPQRAHSLGGFKVQGNkSVEETRELLETAKLLQDLGCWSILMEC 217
                      *********6549*******9986556678899********************************85678899********************* PP

  Pantoate_transf 183 vpaelakeiteklsiptIGIGAGaacdGqvlvlhDllgltekfkpkfvkkyaelaesieeavkaYaeevkegsFPa 258
                      vp+++a+ it+kl++ptIGIGAG++++Gqvlv++D+lg++ k +pkfvkky +l+e++ +++++Y++ev e+sFP+
       CCD24235.1 218 VPHKVATLITSKLDVPTIGIGAGNGTNGQVLVISDMLGMQGKSVPKFVKKYSNLNEIAINGIANYTKEVMEKSFPE 293
                      ***************************************************************************7 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.9e-07    0.0029       7      69 ..      41     103 ..      35     130 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.9e-07
  PEP_mutase   7 kgeplvlpnawDalsakiveeagfkalatsSlavaaslGvpDgeelpleellaavraiaevvs 69 
                 k  p+ ++ a+D ++a+++ ea  + + ++     +slG++ + +lp++e   +v+++++v  
  CCD24235.1  41 KDIPITMTTAYDSITASWCHEAQSDMILVGDSLAMTSLGYASTTDLPFDEFKYHVKSVCRVPG 103
                 44599*************************99999***********************99764 PP

>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.6e-06     0.034      55      99 ..     195     238 ..     165     304 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.6e-06
                   HHHHHHHHHHHHCTTESEEEE--CHHHHHHHHHHHH-SSEEEECH CS
  Asp_Glu_race  55 vlklleaakkLekagadaiviaCnTahavadelqkkikiPvlgiv 99 
                   +++lle ak L+++g+  i++ C  +h va+ +++k+++P +gi 
    CCD24235.1 195 TRELLETAKLLQDLGCWSILMECV-PHKVATLITSKLDVPTIGIG 238
                   569********************9.78****************63 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2521.20
//
Query:       CCD24236.1  [L=335]
Description: hypothetical protein NDAI_0C05770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-24   85.6  10.9      9e-06   26.3   0.0    6.1  6  WD40           WD domain, G-beta repeat
      1e-15   57.8   0.1    1.1e-05   25.6   0.0    5.2  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
     0.0001   21.5   0.0    0.00027   20.1   0.0    1.6  2  Coatomer_WDAD  Coatomer WD associated region
     0.0016   17.5   0.2         12    4.7   0.0    3.9  4  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
     0.0019   18.1   0.0       0.44   10.4   0.0    3.2  3  eIF2A          Eukaryotic translation initiation factor eIF2A
     0.0023   16.7   0.2       0.26    9.9   0.1    2.8  3  Nup160         Nucleoporin Nup120/160
     0.0084   14.7   0.0        1.1    7.7   0.0    2.1  2  Cytochrom_D1   Cytochrome D1 heme domain
  ------ inclusion threshold ------
       0.02   13.2   0.1       0.16   10.2   0.0    2.1  2  Frtz           WD repeat-containing and planar cell polarity 
      0.088   12.8   0.0         43    4.2   0.0    3.7  4  PD40           WD40-like Beta Propeller Repeat
       0.14   11.5   0.6       0.54    9.5   0.2    2.0  2  WD40_like      WD40-like domain
       0.58    9.8   1.9        6.2    6.5   0.1    3.1  5  Hira           TUP1-like enhancer of split


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0074        12       6      37 ..      18      48 ..      13      49 .. 0.77
   2 !   20.0   0.0   5.4e-07   0.00088       8      36 ..      61      90 ..      55      91 .. 0.89
   3 !   26.3   0.0   5.5e-09     9e-06       3      38 .]      97     133 ..      95     133 .. 0.95
   4 !   17.7   0.1   2.9e-06    0.0047       3      38 .]     139     176 ..     137     176 .. 0.83
   5 !   16.8   0.1   5.6e-06    0.0091      12      38 .]     194     226 ..     180     226 .. 0.69
   6 ?   -1.1   0.4       2.7   4.3e+03       9       9 ..     295     295 ..     247     323 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0074
                EEESS.SSE.EEEEEETTSSEEEEEETTSEEEEE CS
        WD40  6 tltGH.ssv.tslafspdgawlasGsdDgtvriW 37
                +  +H  +v ts +fsp+g  +a +    t+ ++
  CCD24236.1 18 I--THsEDVpTSAKFSPNGEKIAICQ-GTTIILY 48
                4..7966799***********99875.6666665 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 5.4e-07
                ESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40  8 tGH.ssvtslafspdgawlasGsdDgtvri 36
                t H ++++ l++spd++ +a++sdD t+ i
  CCD24236.1 61 TSHtKPISELCWSPDNQCIATASDDFTLEI 90
                489999*******************99976 PP

  == domain 3  score: 26.3 bits;  conditional E-value: 5.5e-09
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +l+ l GH  +v sl+++  g++l s+s+D ++++Wd
  CCD24236.1  97 PLHRLVGHtAPVVSLCYNGKGNLLYSSSMDESIKVWD 133
                 7899****88899***********************9 PP

  == domain 4  score: 17.7 bits;  conditional E-value: 2.9e-06
                 EEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 +++t+++H  sv s++ +p+ + ++ sGs Dg +r++d
  CCD24236.1 139 LMKTISAHsESVVSVDICPEDSTVLsSGSFDGLIRLFD 176
                 57899***77799***88888886537899******98 PP

  == domain 5  score: 16.8 bits;  conditional E-value: 5.6e-06
                 S......EEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  12 s......vtslafspdgawla.sGsdDgtvriWd 38 
                 s      ++ ++fs++g++l+  +  Dg v+iWd
  CCD24236.1 194 SengvvpISQVRFSKNGKYLLvKSF-DGVVKIWD 226
                 14446558999********863778.*******9 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 2.7
                 S CS
        WD40   9 G 9  
                  
  CCD24236.1 295 C 295
                 2 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.7e-05     0.093      33      69 ..      59      95 ..      28     102 .. 0.80
   2 !   25.6   0.0   6.7e-09   1.1e-05       1      86 [.      70     152 ..      70     158 .. 0.94
   3 !    8.5   0.0    0.0015       2.5      49      81 ..     159     191 ..     155     196 .. 0.90
   4 !   12.4   0.0   8.9e-05      0.15      36      81 ..     196     241 ..     191     251 .. 0.85
   5 ?   -0.8   0.0       1.2   1.9e+03      54      76 ..     267     289 ..     262     312 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.7e-05
  ANAPC4_WD40 33 eedkedsevrsLaWkpdgklLavaysdgevrlldaes 69
                  ++++ + +++L+W+pd++ +a a +d ++++ +   
   CCD24236.1 59 LQTSHTKPISELCWSPDNQCIATASDDFTLEIRHLTY 95
                 5668999********************9999988765 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 6.7e-09
  ANAPC4_WD40   1 lswcptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  l+w+p +  iA a++d  l++  l    +  l   ++   v sL+++ +g+lL  +  d ++++ d+ +g +++++s++se+ v++
   CCD24236.1  70 LCWSPDNQCIATASDDFTLEIRHLTYGPLHRL--VGHTAPVVSLCYNGKGNLLYSSSMDESIKVWDVLNGILMKTISAHSES-VVS 152
                  58************************999999..899******************************************997.544 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0015
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  d ++L  +  dg +rl+d++sg+++++l+++++
   CCD24236.1 159 DSTVLSSGSFDGLIRLFDSSSGHCLKTLTYDKD 191
                  6789999********************998875 PP

  == domain 4  score: 12.4 bits;  conditional E-value: 8.9e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +    +++++++++gk L v   dg v++ d   g vv+++ + se
   CCD24236.1 196 NGVVPISQVRFSKNGKYLLVKSFDGVVKIWDCIGGYVVRTFLALSE 241
                  5556899******************************999977766 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.2
  ANAPC4_WD40  54 avaysdgevrlldaesgkvvhsl 76 
                  + +y+ ge+   ++e++k++ s+
   CCD24236.1 267 VSGYEHGELFCWNSENKKLLYSS 289
                  66778888888888888877665 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.6e-07   0.00027      30     151 ..      20     151 ..      13     166 .. 0.86
   2 ?   -1.7   0.0      0.69   1.1e+03      36      57 ..     202     224 ..     187     293 .. 0.57

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.6e-07
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX.. CS
  Coatomer_WDAD  30 sieiypqslshnpngrfvlVcgdgeyiiyt......alalrnkaygkgldfvwvssnr.favlessksvkifknfkekktksikleyqvdkifg.. 116
                     +e  p+s +++png+ +++c+  ++i+y       +  l+++ +   ++ +w++ n+ +a   +  +++i +   +   + + ++  v ++ +  
     CCD24236.1  20 HSEDVPTSAKFSPNGEKIAICQGTTIILYDvqlrvtESILQTSHTKPISELCWSPDNQcIATASDDFTLEIRHLTYGPLHRLVGHTAPVVSLCYng 115
                    56778**************************9999877788888888999*****8884566666******66668888899999999999999** PP

                    .XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD 117 .GalLgvkseg.svsfYDweqgklvrridvkkvknVv 151
                     G+lL  +s + s+ ++D+ +g l + i+ ++ + Vv
     CCD24236.1 116 kGNLLYSSSMDeSIKVWDVLNGILMKTISAHS-ESVV 151
                    ******9885549***************9987.6665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.69
                    XXXXXXXXXXXXXX.XXXXXXXX CS
  Coatomer_WDAD  36 qslshnpngrfvlV.cgdgeyii 57 
                     +++++ ng+++lV   dg  +i
     CCD24236.1 202 SQVRFSKNGKYLLVkSFDGVVKI 224
                    45556666666666323333333 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.21   3.4e+02     183     218 ..      17      52 ..      10      58 .. 0.72
   2 ?    3.8   0.0     0.014        23     178     209 ..      55      86 ..      48      93 .. 0.85
   3 !    4.7   0.0    0.0073        12     183     215 ..     142     176 ..     118     198 .. 0.73
   4 ?    3.2   0.0     0.022        36     190     215 ..     201     226 ..     189     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.21
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkffqvyl 218
                 +i++     ++a fsp+G  +a+ ++  ++ ++ v l
  CCD24236.1  17 RITHSEdVPTSAKFSPNGEKIAI-CQGTTIILYDVQL 52 
                 5555542457899********98.5666666776655 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.014
    Ge1_WD40 178 eegllkieehsliveaafspdGtalatasedG 209
                 +e++l+ +++  i+e  +spd   +atas d 
  CCD24236.1  55 TESILQTSHTKPISELCWSPDNQCIATASDDF 86 
                 567788888889*****************995 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0073
    Ge1_WD40 183 kieehs..liveaafspdGtalatasedGevkffq 215
                  i+ hs   ++  +   d t+l+  s dG++++f 
  CCD24236.1 142 TISAHSesVVSVDICPEDSTVLSSGSFDGLIRLFD 176
                 4666654145555666799*************995 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.022
    Ge1_WD40 190 iveaafspdGtalatasedGevkffq 215
                 i++  fs +G  l + s dG+vk + 
  CCD24236.1 201 ISQVRFSKNGKYLLVKSFDGVVKIWD 226
                 78889******************996 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00027      0.44      64     118 ..      27      82 ..      12      90 .. 0.78
   2 ?    1.2   0.0      0.17   2.8e+02     107     160 ..     112     164 ..     104     171 .. 0.63
   3 ?    1.7   0.0      0.12     2e+02     105     131 ..     203     226 ..     162     240 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
                 EEEE-TTSS-EEEEESSSSCEEEEEECS....CEEEEEEEEES--EEEE-TTSSEEEEE CS
       eIF2A  64 dvaWspkskefaviyGkmpakvslfdlk....vkviskleeqkrNtiffspkgklvlla 118
                  ++ sp+++++a+++G    ++ l+d++     +++ + ++++   + +sp ++ +++a
  CCD24236.1  27 SAKFSPNGEKIAICQGT---TIILYDVQlrvtESILQTSHTKPISELCWSPDNQCIATA 82 
                 5688999*******996...699999984442233344566788999999999999887 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.17
                 EE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE..-TT--EEEE-TTSSEEEE CS
       eIF2A 107 ffspkgklvllaGfgnlaGeleiwdvkkkkkiakae..aanatlvewspdgryvlT 160
                  ++ kg+l+  + + +   ++++wdv +   ++++   ++  ++v+ +p+++ vl 
  CCD24236.1 112 CYNGKGNLLYSSSMDE---SIKVWDVLNGILMKTISahSESVVSVDICPEDSTVLS 164
                 5666666666655544...5888988876666655410445566777777777765 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.12
                 EEEE-TTSSEEEEE-TTSSS-EEEEEE CS
       eIF2A 105 tiffspkgklvllaGfgnlaGeleiwd 131
                 ++ fs++gk++l+  f    G ++iwd
  CCD24236.1 203 QVRFSKNGKYLLVKSF---DGVVKIWD 226
                 4566666666666444...34466666 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00016      0.26     229     259 ..     116     146 ..     100     198 .. 0.77
   2 ?    3.9   0.0     0.011        17     228     262 ..     206     242 ..     178     297 .. 0.75
   3 ?   -1.9   0.0      0.59   9.5e+02     225     245 ..     304     323 ..     280     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00016
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatidll 259
                 + ++l++ s d  ++vW++l+g ++ ti+  
  CCD24236.1 116 KGNLLYSSSMDESIKVWDVLNGILMKTISAH 146
                 5689999********************9887 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
                 ...TTTEEEEEETT-EEEEEETTTTEEEEE.EE--.-S CS
      Nup160 228 i..gqtylfalsrdgkLrvWnlltgkclat.idllrde 262
                    + +yl++ s dg++++W+   g +++t   l+ +e
  CCD24236.1 206 FskNGKYLLVKSFDGVVKIWDCIGGYVVRTfLALS-EE 242
                 2337889***************9999999966666.22 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.59
                 ....TTTEEEEEETT-EEEEE CS
      Nup160 225 vveigqtylfalsrdgkLrvW 245
                 +    ++++++ls++g+  vW
  CCD24236.1 304 IHC-RDNLVCTLSLNGECYVW 323
                 333.789*********99999 PP

>> Cytochrom_D1  Cytochrome D1 heme domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0046       7.4      30     108 ..     100     179 ..      90     196 .. 0.84
   2 !    7.7   0.0   0.00068       1.1      41     111 ..     204     285 ..     187     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0046
                   EEE-STTEEEEEE-TT.SSEEEEEETTSEEEEEESSSSSEEEEEE-SSEE.EEEEE--TTSEEEEEEEETTEEEEEETTT CS
  Cytochrom_D1  30 vletgyalHisrvfasdgRyvyvigRDgkvtliDLwakeivaevkiGlna.rsvavSqddryvivgnYlPgqlvildaet 108
                   +l ++ a  +s  +   g ++y  + D  +++ D+++   ++++ + +++  sv++  +d  v+ +    g + ++d+  
    CCD24236.1 100 RLVGHTAPVVSLCYNGKGNLLYSSSMDESIKVWDVLNGILMKTISAHSESvVSVDICPEDSTVLSSGSFDGLIRLFDSSS 179
                   5555666667777788899***************************9998459********9999999999999999875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.00068
                   EE-TT.SSEEEEEETTSEEEEEESSSSSEEEE.EE-SSEEEEEEE-........-TTSE..EEEEEEETTEEEEEETTT--E CS
  Cytochrom_D1  41 rvfasdgRyvyvigRDgkvtliDLwakeivae.vkiGlnarsvavS........qddry..vivgnYlPgqlvildaetLel 111
                   + f+++g+y++v + Dg v++ D     +v++ + +  ++r ++ S         d+ +  ++v+ Y+ g+l   ++e+ +l
    CCD24236.1 204 VRFSKNGKYLLVKSFDGVVKIWDCIGGYVVRTfLALSEETRALKHScgidflypSDETLapIVVSGYEHGELFCWNSENKKL 285
                   3599********************9999888735678899999999898888886666534688888888888777776655 PP

>> Frtz  WD repeat-containing and planar cell polarity effector protein Fritz
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   9.9e-05      0.16     264     331 ..      27      96 ..       8     107 .. 0.79
   2 ?    0.2   0.0      0.11   1.8e+02     259     327 ..     105     176 ..      99     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.9e-05
        Frtz 264 slafnpdedkLllGceDssviLydeerkitklv..kaevvP.sliswhpdsaillvasergelqifDlaLs 331
                 s  f+p+ +k+ + c+ +++iLyd ++++t+ +   ++  P s + w pd+  +  as+   l i  l   
  CCD24236.1  27 SAKFSPNGEKIAI-CQGTTIILYDVQLRVTESIlqTSHTKPiSELCWSPDNQCIATASDDFTLEIRHLTYG 96 
                 5668999999877.****************9776355667756799********99999988888766655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.11
        Frtz 259 raqvislafnpdedkLllGceDssviLydeerkitklv...kaevvPsliswhpdsaillvasergelqifD 327
                  a+v+sl++n + + L   + D+s+ ++d   +i   +   ++e v s   +  ds++l  +s  g +++fD
  CCD24236.1 105 TAPVVSLCYNGKGNLLYSSSMDESIKVWDVLNGILMKTisaHSESVVSVDICPEDSTVLSSGSFDGLIRLFD 176
                 578999999999999999999999999999888755441114444444444666778888888888888888 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.027        43      15      26 ..      29      40 ..      26      41 .. 0.85
   2 ?    1.2   0.0      0.24   3.9e+02       5      23 ..      61      79 ..      59      84 .. 0.73
   3 ?    2.0   0.0      0.13   2.1e+02      15      24 ..     205     214 ..     194     225 .. 0.86
   4 ?   -1.9   0.0       2.1   3.5e+03      21      33 ..     283     299 ..     282     300 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.027
                EE-TTSSEEEEE CS
        PD40 15 sfSPDGkrlaFs 26
                 fSP+G ++a++
  CCD24236.1 29 KFSPNGEKIAIC 40
                69*******986 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.24
                -SSSS.EEEEEE-TTSSEE CS
        PD40  5 tntpgnegaPsfSPDGkrl 23
                t++++++ +  +SPD + +
  CCD24236.1 61 TSHTKPISELCWSPDNQCI 79
                56666777777****8766 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.13
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 +fS++Gk+l 
  CCD24236.1 205 RFSKNGKYLL 214
                 8******995 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 2.1
                 SEEEEEEECT.....TC CS
        PD40  21 krlaFsSdRg....sGk 33 
                 k+l +sS ++    sG+
  CCD24236.1 283 KKLLYSSMGNdnchSGS 299
                 79999999887777666 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00033      0.54       3      67 ..     108     174 ..     106     191 .. 0.85
   2 ?   -0.4   0.0      0.35   5.8e+02      61     138 ..     228     315 ..     201     321 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00033
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd..lilvvtlDGtill 67 
                 + s+ ++ kg+l+   + d+ ++v ++ +++++  +   ++Sv+ v +  +d  ++  ++ DG i l
  CCD24236.1 108 VVSLCYNGKGNLLYSSSMDESIKVWDVLNGILMKTISAHSESVVSVDICPEDstVLSSGSFDGLIRL 174
                 667889999**99999*********************************999534445789**9955 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.35
   WD40_like  61 lDGtillslleneeevenekieedistvkviddk....lliGtnkGsiyvfskdlqleevllg.......qsseIkeikiennkiysLs 138
                 + G+++ + l ++ee++  k    i +    d+     ++ G ++G++++++ + + + ++++        +s+I +i+  +n + +Ls
  CCD24236.1 228 IGGYVVRTFLALSEETRALKHSCGIDFLYPSDETlapiVVSGYEHGELFCWNSE-NKKLLYSSmgndnchSGSPIISIHCRDNLVCTLS 315
                 455566666666666666666666666554444411113447777888887777.4444443311111113466667776677666666 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       1.7   2.7e+03      72     100 ..      26      54 ..      18     130 .. 0.70
   2 ?   -3.9   0.0       5.5   8.9e+03      22      38 ..     118     134 ..      99     140 .. 0.59
   3 ?   -0.9   0.0      0.68   1.1e+03      17      37 ..     206     226 ..     196     233 .. 0.77
   4 ?    0.1   0.0      0.34   5.6e+02      30      45 ..     272     287 ..     266     292 .. 0.87
   5 ?    6.5   0.1    0.0038       6.2      11      36 ..     298     323 ..     293     331 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.7
        Hira  72 tsasltsnGvpivtlsngdgylydkslkt 100
                 tsa+++ nG  i  ++     lyd++l++
  CCD24236.1  26 TSAKFSPNGEKIAICQGTTIILYDVQLRV 54 
                 56667777777777777777777776654 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 5.5
        Hira  22 syLlavtsvgllyvWnv 38 
                 + L   + + ++ vW+v
  CCD24236.1 118 NLLYSSSMDESIKVWDV 134
                 44444445556677776 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.68
        Hira  17 LessgsyLlavtsvgllyvWn 37 
                 ++ +g+yLl+ + +g + +W+
  CCD24236.1 206 FSKNGKYLLVKSFDGVVKIWD 226
                 344669999999999999998 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.34
        Hira  30 vgllyvWnvkkkkvll 45 
                  g+l++Wn ++kk+l 
  CCD24236.1 272 HGELFCWNSENKKLLY 287
                 699*********9987 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.0038
        Hira  11 espasfLessgsyLlavtsvgllyvW 36 
                 +sp+  ++++++ ++ ++ +g++yvW
  CCD24236.1 298 GSPIISIHCRDNLVCTLSLNGECYVW 323
                 79999********************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 2371.04
//
Query:       CCD24237.1  [L=148]
Description: hypothetical protein NDAI_0C05780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-40  136.1   0.2    7.5e-40  135.8   0.2    1.1  1  UMP1      Proteasome maturation factor UMP1


Domain annotation for each model (and alignments):
>> UMP1  Proteasome maturation factor UMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.8   0.2   4.2e-44   7.5e-40       5     117 ..      29     145 ..      25     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 135.8 bits;  conditional E-value: 4.2e-44
        UMP1   5 glhdtlra...GlkslksqlnssHpLesrlknweetqeklklemlrniyGlaePlrrqmElkivskterkPlalgssnlhldiLtGkdesidfeDvl.. 98 
                 +l+dtlr    G+++++s+ln++HpLesrlknw+ +++++ le++r+i+G+aePlrr+mEl iv+kt+++Pl  +s+++h+diL +kd+s+d+eDv+  
  CCD24237.1  29 ALPDTLRLqegGAVPISSELNDRHPLESRLKNWDVNEHERALEQYRQIFGIAEPLRREMELSIVEKTDFNPL--NSNSMHRDILLNKDTSVDWEDVYpg 125
                 799****999**************************************************************..567********************88 PP

        UMP1  99 .ndpeeseevkdvhsemErk 117
                  + ++ ++ ++d+h+++Erk
  CCD24237.1 126 gRMASGMMIGNDIHNQIERK 145
                 76667788888********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       352  (0.019633); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1159.56
//
Query:       CCD24238.1  [L=703]
Description: hypothetical protein NDAI_0C05790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-16   59.9   0.0    2.9e-16   58.8   0.0    1.6  1  GYF       GYF domain


Domain annotation for each model (and alignments):
>> GYF  GYF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   1.6e-20   2.9e-16       1      40 [.     220     263 ..     220     272 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 1.6e-20
         GYF   1 WeYkdpqgevqGPFsseeMqkWykagYFkdgllvrrved....s 40 
                 W+Y+d++g+vqGPFs++eM +W+++gYF++ l+++rv++     
  CCD24238.1 220 WKYIDSTGTVQGPFSTSEMASWNQQGYFQPVLQICRVDTslepL 263
                 *************************************5544440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2826  (0.157622); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.72
# Mc/sec: 2931.98
//
Query:       CCD24239.1  [L=222]
Description: hypothetical protein NDAI_0C05800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-67  226.6   1.4    2.1e-67  226.2   1.4    1.1  1  Sec66           Preprotein translocase subunit Sec66
  ------ inclusion threshold ------
      0.053   13.2   0.1        1.3    8.7   0.0    2.3  2  Tubulin_3       Tubulin domain
      0.053   12.8   0.2       0.12   11.7   0.0    1.7  2  Endonuc-FokI_C  Restriction endonuclease FokI, C terminal
       0.26   11.2   3.5        6.3    6.7   0.0    2.3  2  DUF3015         Protein of unknown function (DUF3015)


Domain annotation for each model (and alignments):
>> Sec66  Preprotein translocase subunit Sec66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.2   1.4   4.6e-71   2.1e-67       2     173 ..      47     213 ..      46     218 .. 0.98

  Alignments for each domain:
  == domain 1  score: 226.2 bits;  conditional E-value: 4.6e-71
       Sec66   2 vslytPliYvavligslatfsslyrkrkakklaelepwFpenlqrdiYlsllhlekkkeekvpekvlkAALLrravedirrilklreskpalevllqkG 100
                 vs+ytP+iY a+l++sl++f+s+y+k+++kk +el ++F+en++rd+Y++++++     + v+ekv+kAALL+r++e+irr+lk++e +p++e ++++G
  CCD24239.1  47 VSFYTPIIYSAILLISLLLFASQYKKSQLKKRTELPSIFDENDARDLYFEIKSM-----DDVHEKVIKAALLNRGAEAIRRSLKMKELEPQIELIYKNG 140
                 89****************************************************.....48************************************** PP

       Sec66 101 svgddlwqrfqraekeleeElkdvvqeaealkpgWgqtifqsaneilanealrrrleeiekrkeeekeewekk 173
                 svg+++wqrfq+++k++e E+kd++qeaeal+pgW+q+++  a+ei++n+a++rr+++i krke  ++ew++k
  CCD24239.1 141 SVGEEYWQRFQNEMKLMEVEFKDCIQEAEALQPGWVQLFVGNAREICFNQAMQRRFDAIIKRKEVSIKEWDLK 213
                 ***********************************************************************98 PP

>> Tubulin_3  Tubulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.029   1.3e+02     129     155 ..      30      56 ..       5      84 .. 0.67
   2 ?    8.7   0.0   0.00029       1.3      32      82 ..     128     181 ..     119     186 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.029
   Tubulin_3 129 klkklnkarslkelseqaslyvPiakl 155
                 + ++ n+   ++e+ +++s y+Pi+  
  CCD24239.1  30 NGTQFNQEPEMEEILKNVSFYTPIIYS 56 
                 4457799999*************9842 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00029
   Tubulin_3  32 elnsk.llpfedwsvGeeLfeeldkehdlldrdlrpfaeecdqlrg..lqvftg 82 
                 el+ +  l +++ svGee ++++++e  l++ +++  ++e++ l+   +q+f g
  CCD24239.1 128 ELEPQiELIYKNGSVGEEYWQRFQNEMKLMEVEFKDCIQEAEALQPgwVQLFVG 181
                 5555523578999*******************************9544777766 PP

>> Endonuc-FokI_C  Restriction endonuclease FokI, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.6e-05      0.12     136     186 ..      38      89 ..      17      90 .. 0.84
   2 ?   -3.1   0.1      0.91   4.1e+03     112     124 ..     144     156 ..     138     161 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.6e-05
  Endonuc-FokI_C 136 GnfkerLeniksrsgveGaavsvekLLllaeelksgrlek.eelidlfdnne 186
                      +++e L+n++  + +  +a+    LLl+a ++k+++l+k  el + fd+n+
      CCD24239.1  38 PEMEEILKNVSFYTPIIYSAILLISLLLFASQYKKSQLKKrTELPSIFDEND 89 
                     468999*****************************99976267888888887 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.91
  Endonuc-FokI_C 112 nkWWelfeeevkk 124
                     +++W+ f++e+k 
      CCD24239.1 144 EEYWQRFQNEMKL 156
                     6789999998875 PP

>> DUF3015  Protein of unknown function (DUF3015)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.9    0.0085        38      21      44 ..       5      28 ..       1      46 [. 0.84
   2 ?    6.7   0.0    0.0014       6.3      92     123 ..     178     209 ..     138     216 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0085
     DUF3015 21 sglasqvlaattNgtsgnqTfGit 44
                +++++  + +t+Ngt  n+T G  
  CCD24239.1  5 NETFEDAFNTTSNGTYTNNTNGTN 28
                56788999************9865 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0014
     DUF3015  92 lgveaedraafkavlqenfsslfaseevtsee 123
                 l v ++ +  f++++q +f+++++ +ev+ +e
  CCD24239.1 178 LFVGNAREICFNQAMQRRFDAIIKRKEVSIKE 209
                 5566777788***************9998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1593.66
//
Query:       CCD24240.1  [L=587]
Description: hypothetical protein NDAI_0C05810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.2e-140  466.1   0.2   6.7e-140  465.8   0.2    1.1  1  NPL4      NPL4 family
    1.7e-69  232.6   1.5    2.6e-69  231.9   1.5    1.3  1  zf-NPL4   NPL4 family, putative zinc binding region
     0.0021   18.5   0.0      0.016   15.7   0.0    2.4  1  UN_NPL4   Nuclear pore localisation protein NPL4


Domain annotation for each model (and alignments):
>> NPL4  NPL4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  465.8   0.2  1.1e-143  6.7e-140       1     308 []     266     584 ..     266     584 .. 0.97

  Alignments for each domain:
  == domain 1  score: 465.8 bits;  conditional E-value: 1.1e-143
        NPL4   1 RlgylyGryekydevPlGikavveaiyEPpqedeldgltl.led..eeekevdeiakklglekvGviftDlldagakdgtvlckRhkdsyflsslEvil 96 
                 R++++yG+yekyd++PlGika++eaiyEPpq+de+dgltl  e+  +e++e+d++ak++gl++vGviftDl+dag++dg+v+ckRhkds+flsslEvi+
  CCD24240.1 266 RFAFMYGSYEKYDSTPLGIKAIIEAIYEPPQHDEQDGLTLdIEQtrQEMDEIDKLAKTMGLSRVGVIFTDLTDAGNGDGSVFCKRHKDSFFLSSLEVIM 364
                 9***************************************8666668999************************************************* PP

        NPL4  97 aaklqlkhpnvtkysetgkfsskFvtvvvsgdeegeieiesyqvsneaealvradiiepstdPslayvresseerYvpevfYkkkneyglevkenakPa 195
                 aak+q +hpnv+kyse+g fsskFvt+vvsg++egei+i+syqvs+ aealv+a +i++st+Ps+ay++e++++rYvpe+fY+kkneygl+vkenakPa
  CCD24240.1 365 AAKYQKRHPNVSKYSEQGIFSSKFVTCVVSGNTEGEIDISSYQVSTAAEALVDATMISGSTHPSMAYINETTNDRYVPEIFYMKKNEYGLTVKENAKPA 463
                 *************************************************************************************************** PP

        NPL4 196 lPveyLlvslthgfpkepk..plFkkkakfpienRealgelqdlkelakylkssa....kkeleealsdfHlllylakleilskeelkllleavk..ek 286
                 +Pv+yLlvslthgfp +++   +F++ + fp++nR+ +g++qd++el+ky+++sa     + l++++s+fH+lly+++l+ils++e++ll+ a++  ++
  CCD24240.1 464 FPVDYLLVSLTHGFPIDDTvsGKFRTIQGFPWANRQSMGQSQDYQELKKYIYQSAiagdFNVLHDRISNFHFLLYVHTLQILSEDEWALLVIAASskTE 562
                 *****************9855689******************************99999999*****************************99985466 PP

        NPL4 287 deekllelvesegwktlltile 308
                  ee ll+lv++ gw+tl++il+
  CCD24240.1 563 FEEPLLQLVSTAGWQTLVMILQ 584
                 6899****************96 PP

>> zf-NPL4  NPL4 family, putative zinc binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.9   1.5   4.4e-73   2.6e-69       2     145 .]     121     263 ..     120     263 .. 0.99

  Alignments for each domain:
  == domain 1  score: 231.9 bits;  conditional E-value: 4.4e-73
     zf-NPL4   2 kedevDellekqdGkikrkrdeklcrhgekgmceycsplepydeeylkekkikhlsfhaylrklnekknkkesssskiapLeelsykvkkecksghapw 100
                 ke ++De+lek+dG i+r+r+ +lc+hg+kgmceycspl+p+d+ey+++++ikh+sfh+yl+kln+++nkkes+ss+iapL+++++k++k+c++gh+pw
  CCD24240.1 121 KELPIDEELEKEDGLIPRQRS-SLCKHGDKGMCEYCSPLPPWDKEYHEKNNIKHISFHSYLKKLNQATNKKESGSSYIAPLSQPNFKIDKHCSNGHEPW 218
                 6899*****************.8**************************************************************************** PP

     zf-NPL4 101 PkgicskcqPsaitlqrqkfRmvDhvefesseivdkfldaWRktg 145
                 P+gicskcqPsaitl++q+fRmvDhvef++s+++++f+++WR tg
  CCD24240.1 219 PHGICSKCQPSAITLEQQSFRMVDHVEFQKSSLINEFIESWRYTG 263
                 ******************************************998 PP

>> UN_NPL4  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.6e-06     0.016       5      77 ..       1      76 [.       1      79 [. 0.77

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.6e-06
                -EEEEEETTEEEEEEE-TTSBHHHHHHHHHHHSS-STTT-EEESST..TCGCCCSSS.SSSCCCTCH--TT-EEEE CS
     UN_NPL4  5 iiiRvqSadGikRieisekstlktllekvaeelkfsengfslyler..nkttelvss.ssksvkevglkhGdmlyL 77
                ++iR + +dG++Ri  +++   +tl +k   +l+     +s   +     +++ vs+  ++ v ++glkhGd++y 
  CCD24240.1  1 MLIRFRTKDGMQRIPCEPTDLFGTLMDKLLPHLNPRADIQSFTVDDkpGLSGNPVSElLNRDVTDLGLKHGDIVYV 76
                68***************************999988776444444431133333333315999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4057.84
//
Query:       CCD24241.1  [L=708]
Description: hypothetical protein NDAI_0C05820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.3e-176  586.6  10.6   4.3e-176  586.6  10.6    2.0  2  HSP70     Hsp70 protein
    5.4e-07   28.7   0.1      1e-06   27.8   0.1    1.3  1  MreB_Mbl  MreB/Mbl protein
  ------ inclusion threshold ------
      0.073   12.8   0.4       0.21   11.3   0.0    1.9  2  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
       0.12   12.9   0.1       0.44   11.1   0.0    2.0  2  NLE       NLE (NUC135) domain
       0.16   12.4   9.6          1    9.8   0.1    4.3  4  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  586.6  10.6  1.2e-179  4.3e-176       2     598 ..       5     646 ..       4     648 .. 0.97
   2 ?   -2.2   1.4      0.24   8.8e+02     521     557 ..     649     685 ..     643     702 .. 0.41

  Alignments for each domain:
  == domain 1  score: 586.6 bits;  conditional E-value: 1.2e-179
                 EEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTT..SHHHHHHHTTXSSEEEEETTSBEE CS
       HSP70   2 iGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfs..dpevqkeikelpykvvkkengkav 98 
                 +G+D G+ +sv+av+++g+i++++ne +nr+tPs+v+F++k+r++Ge+Ak++ ++n+kntv ++Kr+iG +++  d ++++e k+ ++k+vk ++gk++
  CCD24241.1   5 FGLDFGNSTSVLAVAKNGGIDIVVNEVSNRSTPSLVGFGPKNRYLGETAKTKETSNIKNTVGNLKRIIGLNYDehDHDFKEEAKFATSKLVKLDDGKVG 103
                 7***********************************************************************72256799******************* PP

                 EEEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS......SCEEEE CS
       HSP70  99 veveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd......kernvl 189
                 ++v+ a+e  +f++ q+s+m+ kk+k+t+e+ ++ ++td++i+vP ++ ++qR++++dA+++A +n +RivN++TAa+++YG+ k+d      k+r+v+
  CCD24241.1 104 AQVTLADErkTFSAVQLSGMLFKKMKNTVETEIKSPITDVCIAVPVWYSEEQRYSVADAARVANMNPVRIVNDVTAAGVSYGVFKTDlpegdaKPRIVA 202
                 *****99999***************************************************************************************** PP

                 EEEEXSSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEE CS
       HSP70 190 vyDlGggtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkd 288
                 ++D+G++ +++Si++++kG ++v+aTa+D+h+GG+dfD+a++e l++ef +k++id+++++ka++r++ a ek+Kk LS+  +t++++++e+v++ + d
  CCD24241.1 203 FVDIGHSDYTCSIMAFKKGEMKVLATAYDKHFGGRDFDRAITERLADEFLTKYKIDIRSNPKAYNRILAASEKLKKVLSA--NTTAPISVESVMD-DID 298
                 ********************************************************************************..9************.*** PP

                 EEEEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEE CS
       HSP70 289 lseklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllll 387
                 ++++++R+++eelv++ll+r++ p+ +alk+aklk+e+id v+++GG+tRiP+++++++++fgk++s+t+n+Dea+a+GAA++++++s++ +v++++++
  CCD24241.1 299 VTSQMTREELEELVQPLLKRVTVPILHALKQAKLKAEDIDFVEIIGGTTRIPTLKKSISDAFGKPLSSTLNQDEAIAKGAAFICAIHSPTIRVRPFKFE 397
                 *************************************************************************************************** PP

                 EBESS-EEEEETTTEEEEEESTTCBSSEEEE.EEEEESSTTSS.SEEEEEEESSSSBGGGS...EEEEEEEEECESSCSTTCSEEEE..EEEEETTSCE CS
       HSP70 388 DvtpLslgietlggvmtkliernttiptkks.qvfstaadnqt.aveievlqgerelvkdn...kllgsfeldgippaprGvpqieV..tfdidanGil 479
                 D++p   ++ ++++ + + ++r +++p +++ ++++++++++t ++++ + +++ ++++     k ++s+e++g++  p+G+++i V  ++++d++G +
  CCD24241.1 398 DIHP--NSVTYTWDQQVEDEDRLEVFPSNSTfPSTKMITLYRTdNFTMGAEYTDVKQIPSKhisKDIASWEITGVK-VPEGQDSIPVkmKLRCDPSGFH 493
                 ****..99***********************************9************9988767899**********.9*******9966789******* PP

                 EEEEEETTTCCEEEEEEECCSSSBHHHHHH.............................HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
       HSP70 480 tvsakdketgkeeeitieaseglseeeiek.............................mvkdaeesaeedkkkkeaieakneaeelvyslekkleee. 548
                 t++ +++ +++  ++ i   ++++e+++ +                             +++ ++++ ++dk  +e+ ++kn +ee++y+l++kle + 
  CCD24241.1 494 TIEDAYTLEDIIVKEAIPLPDDAPEDAEVQykevkktvkkdnlkieahtfsldeaklneLIEAENDMFAQDKLVAETEDRKNALEEYIYTLRSKLEGDy 592
                 ******************999977766655699***************************************************************998 PP

                 GGGSTHHHH....HHHHHHHHHHHCHTTSSCHHHHHHHHHHHHHHHHHHHHHHH CS
       HSP70 549 aekvseaek....ekvesaieeLkeeleeeekeeieakteelkkvvekiaekly 598
                 +e++s++ek    +++ +++++L++e++++ k+++ ak+eel+++++ i  +++
  CCD24241.1 593 SEFASDEEKekltDMLMKTEDWLYDEGDDSTKAKYIAKYEELASLGNIIKGRYM 646
                 9999999997787788899**************************999988876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH CS
       HSP70 521 dkkkkeaieakneaeelvyslekkleeeaekvseaek 557
                 +++k++a  ak+ea + ++ + k  +e++ k++++++
  CCD24241.1 649 EEEKRQALRAKEEAAKAAEMAGKMAAEREAKAKADAE 685
                 3333444444444444433333333333333333333 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   2.9e-10     1e-06      77     317 ..     124     380 ..     114     386 .. 0.70

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 2.9e-10
                 HHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT.....--TTSSS-EEE..EEE-SS-EEEEEEET..TE CS
    MreB_Mbl  77 llkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGag.....lpveepsgnmv..vdiGggttevavisl..gg 166
                 l+k++ + v+++ + + + v i+vP   +e +r  v +aa+ a  + v +++++ aA +  g     lp  +++  +v  vdiG     ++++++  g+
  CCD24241.1 124 LFKKMKNTVETEIKSPITDVCIAVPVWYSEEQRYSVADAARVANMNPVRIVNDVTAAGVSYGvfktdLPEGDAKPRIVafVDIGHSDYTCSIMAFkkGE 222
                 4455555566666678889**************************************997662111145555555565559***998888888762245 PP

                 E...EEEEEES-SHHHHHHHHHHHHHHHH..SEE--HHHHHHHHHHH-BSS--HHHH.....EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHH CS
    MreB_Mbl 167 i...vtsksvrvaGdeldeaiikyirkky..nlliGertaekikieigsavkeeeee.....kmeikGrdlvtglpkevevsseevrealkepvsaive 255
                 +    t+   + +G ++d ai++ +  ++  +  i  r+  k   +i +a ++ ++      +  i+   ++  +  + +++ ee++e ++  +++++ 
  CCD24241.1 223 MkvlATAYDKHFGGRDFDRAITERLADEFltKYKIDIRSNPKAYNRILAASEKLKKVlsantTAPISVESVMDDIDVTSQMTREELEELVQPLLKRVTV 321
                 421144556789***********9998764344566666666666665555444333312224445555555555555555555555555555555655 PP

                 HHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHH CS
    MreB_Mbl 256 avkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtgk 317
                  + ++L++  + L a+ +d  + + GG++ +  l+k +s+++g p + + +  +++akG++ 
  CCD24241.1 322 PILHALKQ--AKLKAEDID-FVEIIGGTTRIPTLKKSISDAFGKPLSSTLNQDEAIAKGAAF 380
                 66666665..567776666.46777**********************************975 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.8e-05      0.21     138     196 ..     323     384 ..     299     386 .. 0.84
   2 ?   -1.8   0.3      0.61   2.2e+03      56      81 ..     654     679 ..     621     687 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.8e-05
      FGGY_C 138 ilealekd..sgkpldrlavdGGgskndllmqllAdilgvpVerpkt.aeatalGaAilAav 196
                 il al++   +  ++d + + GG ++ + l + + d++g+p+  + + +ea a GaA + a+
  CCD24241.1 323 ILHALKQAklKAEDIDFVEIIGGTTRIPTLKKSISDAFGKPLSSTLNqDEAIAKGAAFICAI 384
                 4555544433455599999***********************999988*********98875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.61
      FGGY_C  56 dnlglreeirdageveeslaelaaae 81 
                 + l+++ee ++a+e+++ +a+ ++a 
  CCD24241.1 654 QALRAKEEAAKAAEMAGKMAAEREAK 679
                 22344444444444444444444444 PP

>> NLE  NLE (NUC135) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.44      19      43 ..     295     318 ..     283     349 .. 0.81
   2 ?   -3.6   0.0       4.8   1.7e+04      26      36 ..     544     554 ..     529     556 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
         NLE  19 tplsvPasltrkqLselvnkLlkee 43 
                   ++v + +tr++L+elv+ Llk +
  CCD24241.1 295 DDIDVTSQMTREELEELVQPLLK-R 318
                 6799******************9.3 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.8
         NLE  26 sltrkqLselv 36 
                 sl++ +L+el+
  CCD24241.1 544 SLDEAKLNELI 554
                 46777888887 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.016        59       2      20 ..       6      24 ..       5      44 .. 0.87
   2 ?    9.8   0.1   0.00028         1       1      90 [.     202     371 ..     202     384 .. 0.64
   3 ?    2.0   0.1     0.077   2.8e+02      21      38 ..     446     463 ..     433     563 .. 0.92
   4 ?   -4.1   0.6         5   1.8e+04      47      57 ..     662     671 ..     639     690 .. 0.55

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.016
                EEEE-SSSEEEEEEETTEE CS
                xxxxxxxxxxxxxxxxxxx RF
        FtsA  2 lvDiGagktdvavaedgal 20
                ++D+G++++ +ava++g++
  CCD24241.1  6 GLDFGNSTSVLAVAKNGGI 24
                79**************976 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00028
                 EEEEE-SSSEEEEEEETTEEEEEEEES-......-HHHHHHH...................HHHHHT--HHHHHHHHHHH--S--.............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxx.............. RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigv......ggngitkd...................iakalrtaveeAerikikyGsala.............. 60 
                 a vDiG++  +++++  ++   ++v+ +      gg+ +++                      ka++  +++ e++k       +              
  CCD24241.1 202 AFVDIGHSDYTCSIMAFKK-GEMKVLATaydkhfGGRDFDRAiterladefltkykidirsNPKAYNRILAASEKLK-------Kvlsanttapisves 292
                 579*****99999988842.24777777777889********44444444444444443332233344445555555.......033344456666666 PP

                 .......EEEEEHHHHH...................................GGGGSTTHHHHHHHHH.T-........ CS
                 .......xxxxxxxxxx...................................xxxxxxxxxxxxxxxx.xxx......x RF
        FtsA  61 .......ekeigrkels...................................ggsalpnleelaeral.spk......l 90 
                        + +++r+el+                                   g++ +p l++ +++a+ +p       +
  CCD24241.1 293 vmddidvTSQMTREELEelvqpllkrvtvpilhalkqaklkaedidfveiigGTTRIPTLKKSISDAFgKPLsstlnqD 371
                 6666666444444444488889999999999999999999999999*********************864432223322 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.077
                 EEEEEES--HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
        FtsA  21 vhlrvigvggngitkdia 38 
                  +++v ++++++i+kdia
  CCD24241.1 446 EYTDVKQIPSKHISKDIA 463
                 47999999********98 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 5
                 HHHHHHHHH-- CS
                 xxxxxxxxxxx RF
        FtsA  47 eAerikikyGs 57 
                 +A+  +   G+
  CCD24241.1 662 AAKAAE-MAGK 671
                 222222.2233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1193  (0.0665402); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 4864.21
//
Query:       CCD24242.1  [L=419]
Description: hypothetical protein NDAI_0C05830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-35  122.5  23.4    2.7e-35  122.0  23.4    1.1  1  Pex24p    Integral peroxisomal membrane peroxin


Domain annotation for each model (and alignments):
>> Pex24p  Integral peroxisomal membrane peroxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0  23.4   1.5e-39   2.7e-35      13     366 .]      45     400 ..      42     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 122.0 bits;  conditional E-value: 1.5e-39
      Pex24p  13 pqlssrLakifplllildkvlkiltWtnpdktlsfllvytficlvpyl..........elvvlplllllfvvmvpaylyrhplrksslikkeesknest 101
                   ++ ++++i+p+l+i+d+ l+ + W +++++  f +v+ + +   y+          ++++ +l+l++ +++  ++ly++    + l         +t
  CCD24242.1  45 SIMTISMSNIYPFLIIIDNCLNRILWLHNTHYHYFNYVIFIFLSMKYFlqetvrfkfdDILTAWLGLVSTIILCTSILYYIVALFHDL---------KT 134
                 568899*********************************9999999999*********9999******************74434444.........69 PP

      Pex24p 102 segptldeaskeivlnLrdlqnkmedllnpidalekflkelagfkdenlstllfltllltpililllsrl.ipwrlillvlgailltyHpsvkkvllrl 199
                 +++pt++    +i+ +  +++nk+ +l ++  + +         k  +++++  ++ + + i ++l++++ i++++ +l++ ++ ++yH ++ +++l+l
  CCD24242.1 135 ADPPTIE----DIINQIDSITNKLRILQRESFFSS--------RKSYSVTSICKIITISSVIQWILIKWIsITIQKYVLICVIASVCYHCDWVQYTLKL 221
                 *******....**************9998877777........6888999999999999999999998873555999999999**************** PP

      Pex24p 200 lwrlkivrlvvky...ltgkelkka..............kskekkeelikelekketadiildespetr...........kpkrftveifEnqrrwllg 270
                 +wr+++vr+++ +   + +k +  a              +++ ++e+     e+++ +d+++d +  +              k+++++i Enqr+w l+
  CCD24242.1 222 IWRITLVRNIYHWddiIWKKWFGGApvtnletlikytdnRQPHREEQEPGINESFVIKDWYIDLDHYHHvdqenenaepkILKILEIIIWENQRKW-LH 319
                 **********965221455555544*************96666667777777777777655443333333366677889778999***********.99 PP

      Pex24p 271 kgWtsslfsserydwtdetrkalkespsgvdhledvk.pPedWkWdekkkWrlDlepdewvkeeeekkGWvYddnkwkepstedslsketRRRrwiR 366
                  gW ++lf++er ++   + ++++e    ++++ +++ + + +kW e ++W++D+              W+Y++++w+  + +ds++ +tR+R w+R
  CCD24242.1 320 LGWLTKLFPYERGQFSIVKNQEGNEHID-CNNPLSFEqVDDHYKWLE-DSWQIDD--------------WIYSTSSWEYVGLSDSIECYTRSRPWKR 400
                 ****************777778888554.7776666516669*****.*******..............**************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1003  (0.0559429); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3163.32
//
Query:       CCD24243.1  [L=145]
Description: hypothetical protein NDAI_0C05840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-26   91.3   9.9    3.4e-18   65.9   4.0    2.1  2  Rpp20       Rpp20 subunit of nuclear RNase MRP and P
    2.5e-10   40.0   0.4    4.2e-10   39.3   0.4    1.3  1  Alba        Alba
  ------ inclusion threshold ------
       0.04   14.4   2.7      0.087   13.3   1.8    2.0  2  PNPase      Polyribonucleotide nucleotidyltransferase, RNA bi
      0.042   13.3   0.4      0.049   13.1   0.4    1.0  1  MSC         Man1-Src1p-C-terminal domain
      0.097   11.9   0.0       0.11   11.8   0.0    1.1  1  Baculo_E56  Baculoviral E56 protein, specific to ODV envelope


Domain annotation for each model (and alignments):
>> Rpp20  Rpp20 subunit of nuclear RNase MRP and P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.4   1.3e-10   4.7e-07       2      31 ..      31      60 ..      30      64 .. 0.92
   2 !   65.9   4.0   9.4e-22   3.4e-18      60     137 .]      62     140 ..      59     140 .. 0.88

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.3e-10
       Rpp20  2 vpktiyVssktpfmsavkRvqklLeqaekr 31
                +++tiyV+s++p++s+vkRv k++eq++k+
  CCD24243.1 31 IKSTIYVKSSSPYISVVKRVHKFIEQLNKT 60
                689***********************9997 PP

  == domain 2  score: 65.9 bits;  conditional E-value: 9.4e-22
       Rpp20  60 kkeeVfvkatGrAiekalsvgrwfqekeeykvrvetgsVevvDdivedeeekank.aaededeeepetrtRwvsmveva 137
                 ++ +V + ++G+A+ek+ls++++fqe+++ +v+v+t sV+v+D+++ +e++++++ + e+++++e+  ++R vs vev+
  CCD24243.1  62 RSPYVRLMGIGKAVEKTLSIACHFQEEKGRRVDVKTISVDVIDELQYQEDHEEQEeEIENDEDRETVLKKRSVSGVEVK 140
                 5679*****************************************98887775540456778889999*********96 PP

>> Alba  Alba
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.4   1.2e-13   4.2e-10       2      62 ..      34      97 ..      33     102 .. 0.83

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 1.2e-13
                EEEE-STS-HHHHHHHHHHHH....THTTESEEEEEEETTHHHHHHHHHHHHHHHTCTT.EEEEE CS
        Alba  2 eiyVsskspimsyvkralklL....snkkeeeVvlkatGraIskAvsvaeilkrrfgkglyqvnv 62
                +iyV+s+sp+ s vkr+ k++    + +  + V l ++G+a++k++s+a+++++  g   + v++
  CCD24243.1 34 TIYVKSSSPYISVVKRVHKFIeqlnKTGRSPYVRLMGIGKAVEKTLSIACHFQEEKG-RRVDVKT 97
                79*******************65555555************************9874.2244443 PP

>> PNPase  Polyribonucleotide nucleotidyltransferase, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         1   3.6e+03      12      27 ..      48      63 ..      45      70 .. 0.72
   2 ?   13.3   1.8   2.4e-05     0.087       6      58 ..      71     121 ..      66     130 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1
                HHHHHHTTSSSHHHHH CS
      PNPase 12 erisealtiteKqeRy 27
                +r+ + +++ +K +R+
  CCD24243.1 48 KRVHKFIEQLNKTGRS 63
                6777777788888776 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.4e-05
                 HHTTTHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHH...HHSTTS-HHHHHH CS
      PNPase   6 vaelaeerisealtiteKqeRyaaldeikekvveafaaeleeedeedekeike 58 
                 + + +e+++s a + +e ++R+ +++ i+ +v+ +++  ++e+ ee+e+ei++
  CCD24243.1  71 IGKAVEKTLSIACHFQEEKGRRVDVKTISVDVIDELQ--YQEDHEEQEEEIEN 121
                 557789999999999**********************..88999999999975 PP

>> MSC  Man1-Src1p-C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   1.4e-05     0.049     187     278 ..      27     121 ..       4     133 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.4e-05
         MSC 187 ksskekkkllrstslaklslkcrlrrsvretlaryrll...llglllllllilylrsrlrsrraekerveelvkevlerLkkqkkkhaedpstap 278
                 ++++ k++++  +s++++s+ +r+++ + +  ++ r     l+g+  ++  +l +  ++++ + ++  v+++  +v+++L+ q+  ++++++ + 
  CCD24243.1  27 SHKTIKSTIYVKSSSPYISVVKRVHKFIEQLNKTGRSPyvrLMGIGKAVEKTLSIACHFQEEKGRRVDVKTISVDVIDELQYQEDHEEQEEEIEN 121
                 4456678999999************88888888887775556666666888899999**************************999988886654 PP

>> Baculo_E56  Baculoviral E56 protein, specific to ODV envelope
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     3e-05      0.11      90     153 ..      16      79 ..       5     118 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3e-05
  Baculo_E56  90 alaknPrlatylkglGyatllavsvylvlkaadlvqdivealnrtGGsyyvrGkngGdnvdacl 153
                  + k P ++t  +    +t++  s+   +++++ v++ +e ln+tG s yvr    G+ v+  l
  CCD24243.1  16 LIRKRPTIKTLSHKTIKSTIYVKSSSPYISVVKRVHKFIEQLNKTGRSPYVRLMGIGKAVEKTL 79 
                 56677888887777777788888888889**********************9888888777433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1175  (0.0655363); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1049.92
//
Query:       CCD24244.1  [L=448]
Description: hypothetical protein NDAI_0C05850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-08   31.5   0.2    1.4e-07   30.8   0.2    1.4  1  PDH             Prephenate dehydrogenase
    9.3e-05   22.9   0.0    0.00022   21.8   0.0    1.6  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
    0.00013   21.7   0.0    0.00034   20.3   0.0    1.8  1  ApbA            Ketopantoate reductase PanE/ApbA
    0.00035   20.8   0.0    0.00061   20.0   0.0    1.4  1  NAD_binding_2   NAD binding domain of 6-phosphogluconate dehy
     0.0043   16.4   0.0     0.0075   15.6   0.0    1.3  1  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
  ------ inclusion threshold ------
      0.013   15.4   0.0      0.023   14.6   0.0    1.4  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
      0.023   14.3   0.0      0.051   13.1   0.0    1.6  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,
       0.08   13.2   0.0       0.18   12.1   0.0    1.6  1  TrkA_N          TrkA-N domain


Domain annotation for each model (and alignments):
>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.2   6.3e-11   1.4e-07      47     189 ..      72     205 ..      37     279 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 6.3e-11
                 SEEEE-S-GGGHHHHHHHHHHHS-TT-EEEE--S--CHHHHHHHHHCC..GCEEEEEES---S-SSGGG--TTTTTT-EEEEEE-TTS-HHHHHHHHHH CS
         PDH  47 divvlavPvevilevlkelaphlkedalitDvgsvKekvvreleellkegksfvgghPmaGteksGvdaareelfenavviLtPtektdkealekvkel 145
                 d v+ +v    + +++    p  k +a++  ++s K   + + e+ l+  + ++  h + G+         +   e+++ ++     +d + l+ + ++
  CCD24244.1  72 DYVIYSVEAANLDKIVSLYGPSTKVKAIVGGQTSCKSPEIAAFEKYLPPDVDIITVHSLHGP---------KVNTEGQPLVIINHRCSDDKNLQFIESI 161
                 777777777778888888888889999***********************************.........55679*********************** PP

                 HHHCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHCHHCC CS
         PDH 146 leevgarvilmspeeHDrvvavvshlphvvaialaatlkekknd 189
                 +  ++ + ++++ eeHDr++a ++ ++h+++ ++ a+ ++ k+ 
  CCD24244.1 162 VSCLKSKHVYLTFEEHDRITADTQAVTHAAFLSMGAAWAKVKVY 205
                 **********************************9988865553 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   9.7e-08   0.00022       2      81 ..      14      90 ..      13     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 9.7e-08
                   EEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.-EEECECHHHHHH.H-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored  2 igiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg.vkvtavdneeaae.eadvvvlavkpedveevlsel 81
                   igiiG G+mg   a+++++ag    ++v      +e  eel+++++ +k + v n   ++  +d v+ +v  +++++++s  
     CCD24244.1 14 IGIIGLGDMGLLYANKFSEAG---WNVV-C-CDREEFYEELKDKYKdAKFSIVLNGHYVSrVSDYVIYSVEAANLDKIVSLY 90
                   9********************...9999.4.566788********997777777777777589***********99999876 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.5e-07   0.00034       1      44 [.      14      57 ..      14     100 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.5e-07
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEE CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrlt 44
                i i+G+G +G l+a k ++ag++v++++r++ +e+lk++  + +
  CCD24244.1 14 IGIIGLGDMGLLYANKFSEAGWNVVCCDREEFYEELKDKYKDAK 57
                79*****************************8888887765555 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.7e-07   0.00061       2      65 ..      14      80 ..      13     106 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.7e-07
                   EEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT....EEE-SSHHHHHHHCSEEEE-SSS CS
  NAD_binding_2  2 igfiGlGvMGsnmalnllkagykvavynrtkekveelvaeg....akaaesieelvasldvvitmvka 65
                   ig+iGlG MG   a+++ +ag++v++ +r+ e  eel ++     ++++ +   + +  d vi  v+a
     CCD24244.1 14 IGIIGLGDMGLLYANKFSEAGWNVVCCDRE-EFYEELKDKYkdakFSIVLNGHYVSRVSDYVIYSVEA 80
                   8***************************99.4455554443222244444433333333666666665 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.4e-06    0.0075      37      96 ..      12      75 ..       2      83 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.4e-06
                  SEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHH...CHHHHTCEEC.SHHHHHHH-SEEE CS
  2-Hacid_dh_C 37 ktvGiiGlGrIGqavakrlkafgmkviaydrskkkee...eeeelgvelv.sleellaesDivs 96
                  + +GiiGlG++G   a+++++ g +v++ dr +  ee   + ++ +++ v + + + + sD+v+
    CCD24244.1 12 RIIGIIGLGDMGLLYANKFSEAGWNVVCCDREEFYEElkdKYKDAKFSIVlNGHYVSRVSDYVI 75
                  568****************************987666544444444444445556666666665 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0     1e-05     0.023       2      42 ..      14      53 ..      13     103 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1e-05
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHH CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdiseealekaleki 42
                +++iG G mG   a+ f +ag +Vv +d++e + e+ ++k 
  CCD24244.1 14 IGIIGLGDMGLLYANKFSEAGWNVVCCDREE-FYEELKDKY 53
                79**************************864.444444444 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.3e-05     0.051       3      33 ..      14      44 ..      12      62 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.3e-05
                    EEEE--STTHHHHHHHHHHCTSEEEEE-S-H CS
  UDPG_MGDP_dh_N  3 isviGlGYvGlvtaavlaeighevigvDide 33
                    i +iGlG +Gl  a  ++e+g +v+++D +e
      CCD24244.1 14 IGIIGLGDMGLLYANKFSEAGWNVVCCDREE 44
                    89**************************875 PP

>> TrkA_N  TrkA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     8e-05      0.18       3      41 ..      16      53 ..      14      70 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8e-05
                EES-SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHTT CS
      TrkA_N  3 iiGlGrvGrslaeeLseggkdvvvidkdeerveelreeg 41
                iiGlG++G   a+++se+g++vv  d+ ee  eel+++ 
  CCD24244.1 16 IIGLGDMGLLYANKFSEAGWNVVCCDR-EEFYEELKDKY 53
                9****************8888999999.67888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3234.95
//
Query:       CCD24245.1  [L=289]
Description: hypothetical protein NDAI_0C05860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.20s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2344.63
//
Query:       CCD24246.1  [L=425]
Description: hypothetical protein NDAI_0C05870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1011  (0.0563891); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3330.71
//
Query:       CCD24247.1  [L=846]
Description: hypothetical protein NDAI_0C05880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-32  111.8  12.4    1.5e-32  111.8  12.4   10.9 12  Fungal_TACC   Fungal Transforming acidic coiled-coil (TACC) p
    6.1e-05   22.8  26.0    6.1e-05   22.8  26.0    6.8  7  SHE3          SWI5-dependent HO expression protein 3
  ------ inclusion threshold ------
       0.33   10.3 117.5      0.014   14.8  16.3    7.6  6  GAS           Growth-arrest specific micro-tubule binding
        1.4    7.8 112.0      0.011   14.7  24.5    6.0  6  Spc7          Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.0      0.73   3.3e+03      45      73 ..     174     202 ..     162     210 .. 0.63
   2 ?    1.4   0.2       0.1   4.6e+02      39      64 ..     312     337 ..     308     344 .. 0.85
   3 ?    3.5   2.1     0.021        96      36      67 ..     369     400 ..     357     407 .. 0.83
   4 ?   -0.1   2.4      0.28   1.3e+03      27      70 ..     410     452 ..     404     459 .. 0.62
   5 ?    3.8   4.5     0.017        78      41      76 ..     472     507 ..     457     508 .. 0.69
   6 ?   -6.5  11.1         4   1.8e+04      29      70 ..     507     549 ..     491     556 .. 0.64
   7 ?   -6.2   9.4         4   1.8e+04      26      69 ..     520     566 ..     516     574 .. 0.60
   8 ?   -1.8   4.1      0.99   4.5e+03      45      71 ..     563     589 ..     553     601 .. 0.68
   9 ?   -2.3   5.5       1.4   6.3e+03      19      52 ..     629     661 ..     609     689 .. 0.65
  10 ?   -2.5   4.4       1.6   7.1e+03      35      75 ..     669     709 ..     660     723 .. 0.68
  11 ?    2.9   1.0     0.034   1.5e+02      44      68 ..     734     757 ..     727     761 .. 0.81
  12 !  111.8  12.4   3.4e-36   1.5e-32       1      77 []     764     840 ..     764     840 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.73
  Fungal_TACC  45 lenkslkqeieqLkkqleaerkEKqeLlk 73 
                   ++++ +++  +++k+l+++r+   +L +
   CCD24247.1 174 ADENETANDNSHVRKKLKLDRESVPNLTQ 202
                  34556677788888888888776555554 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.1
  Fungal_TACC  39 kldklelenkslkqeieqLkkqleae 64 
                  +++ l++ n +l++e  q++k+l+  
   CCD24247.1 312 EFKDLKKRNGTLANENYQINKRLNQT 337
                  5788999999***********99865 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.021
  Fungal_TACC  36 yqkkldklelenkslkqeieqLkkqleaerkE 67 
                   ++++++l++e++ l++  e+Lk +l++ + E
   CCD24247.1 369 LKEQINQLSMERDDLSTRRENLKTKLKSCKDE 400
                  5789**********************987665 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.28
  Fungal_TACC  27 llkkgyeakyqkkldklelenkslkqeieqLkkqleaerkEKqe 70 
                  +l+++y++   ++ d  +++ ++l+ e ++Lk++l+++ +E ++
   CCD24247.1 410 ILQNKYDT-VVNECDIWKNNYQTLELESTKLKDELKLKDTELNS 452
                  56666644.34455666666667777777777777777766555 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.017
  Fungal_TACC  41 dklelenkslkqeieqLkkqleaerkEKqeLlklld 76 
                   +l++en+sl+++++ ++++l+++++E ++L k ++
   CCD24247.1 472 VRLKNENESLNSNLKIIEEKLHSKKSEVDQLNKTIE 507
                  467777777777777777777777777777766665 PP

  == domain 6  score: -6.5 bits;  conditional E-value: 4
  Fungal_TACC  29 kkgyea.kyqkkldklelenkslkqeieqLkkqleaerkEKqe 70 
                   ++ e+ ++++  ++l++e ++l  e e+L+k+ + + +E ++
   CCD24247.1 507 EESLETqRINETSKNLKEEYETLLLEKEELEKKTNEQIEEHNR 549
                  3333332566677788888888888888888888877777665 PP

  == domain 7  score: -6.2 bits;  conditional E-value: 4
  Fungal_TACC  26 kllkkgyeaky..qkkld.klelenkslkqeieqLkkqleaerkEKq 69 
                  k lk++ye+    +++l+ k +++ +++++ i +L++ ++a+++E +
   CCD24247.1 520 KNLKEEYETLLleKEELEkKTNEQIEEHNRTIFELRNDITAKENEFK 566
                  55777777765223334313344445666677777777777777755 PP

  == domain 8  score: -1.8 bits;  conditional E-value: 0.99
  Fungal_TACC  45 lenkslkqeieqLkkqleaerkEKqeL 71 
                  +e k l++  +++++qle+++kE +eL
   CCD24247.1 563 NEFKDLQDTKNEIQEQLETKTKELEEL 589
                  445556666667777777777776655 PP

  == domain 9  score: -2.3 bits;  conditional E-value: 1.4
  Fungal_TACC  19 sKHEqKVkllkkgyeakyqkkldklelenkslkq 52 
                  sK E+ V+  k++ye++  ++l+k+++e +sl+ 
   CCD24247.1 629 SKLETVVDEWKTKYETQ-TTELKKVTVELESLQL 661
                  67778888888888765.3455555555554433 PP

  == domain 10  score: -2.5 bits;  conditional E-value: 1.6
  Fungal_TACC  35 kyqkkldklelenkslkqeieqLkkqleaerkEKqeLlkll 75 
                   + k+l++l+++ +sl++ ++  + +++  ++E ++L k+l
   CCD24247.1 669 EHLKELEHLHVNMSSLQEMLKDHSTTITELQEENENLKKML 709
                  55566667777666666666666666666666666666665 PP

  == domain 11  score: 2.9 bits;  conditional E-value: 0.034
  Fungal_TACC  44 elenkslkqeieqLkkqleaerkEK 68 
                  + en+  k+eie+Lkk++e e kEK
   CCD24247.1 734 NDENNIDKREIESLKKEVE-EWKEK 757
                  6799999**********98.45565 PP

  == domain 12  score: 111.8 bits;  conditional E-value: 3.4e-36
  Fungal_TACC   1 etnkrlqelaedLYvqYSsKHEqKVkllkkgyeakyqkkldklelenkslkqeieqLkkqleaerkEKqeLlkllde 77 
                  +tnkrl+ laedLY+qYSsKHEqKVkllkkgye+kyq +l++l+l+n++l +e+eqL+kql+aerkEKq+L+k+ld+
   CCD24247.1 764 DTNKRLKLLAEDLYIQYSSKHEQKVKLLKKGYENKYQGELSRLNLQNSGLIEELEQLNKQLTAERKEKQDLIKMLDD 840
                  69*************************************************************************95 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   7.6       1.8   7.9e+03     135     206 ..     120     193 ..      74     211 .. 0.73
   2 ?    3.0   1.2     0.016        74      73     120 ..     311     358 ..     303     364 .. 0.85
   3 !   22.8  26.0   1.4e-08   6.1e-05      66     201 ..     364     494 ..     356     509 .. 0.81
   4 ?   -5.9  32.2         4   1.8e+04      53     191 ..     449     582 ..     440     590 .. 0.44
   5 ?   -7.4  34.0         4   1.8e+04      43     218 ..     515     687 ..     500     692 .. 0.73
   6 ?   -7.3  26.4         4   1.8e+04      68     207 ..     628     780 ..     624     791 .. 0.66
   7 ?   -7.9  27.1         4   1.8e+04      46     180 ..     694     844 ..     690     846 .] 0.57

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHH.HHHSSSXXXXXXXXXXX.XXXXX.XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SHE3 135 ieeLkesleklkl.enekqleelqerissndkdidtk.ld.synnkkknlesieeeknkkllkkleslaseldle 206
                 i++L  s ++  +  n++  +++ ++is+++  ++++ ++ ++++ +k+++++e+  +++  +  ++++++l+l+
  CCD24247.1 120 INKLFASSNNASNnHNDNDQNTNGDKISESK-LLNHSpIKlELSSPMKQMDQAENADENETANDNSHVRKKLKLD 193
                 5555544444333034444455555666555.4544314336888999999999999999999999999999965 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.016
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH CS
        SHE3  73 kelselkesveelklekkqlkkrlenssaseteleeelerlkvqYdal 120
                  e+++lk+++  l+ e+ q++krl+++ ++ ++ + ++ ++k +Y  +
  CCD24247.1 311 YEFKDLKKRNGTLANENYQINKRLNQTVSRLENIRYKYLEVKKDYSYV 358
                 48999********************99999999999999999999766 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 1.4e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHSSSXXXXXXXXXX CS
        SHE3  66 rrlkdlekelselkesveelklekkqlkkrlenssaseteleeelerlkvqYdalvdsqkeYkehYqq.eieeLkesleklklenekqleelqerissn 163
                  + kdl +++++l+ + ++l++++++lk++l++ +++   l+++   l+++Yd++v+ +  +k+ Yq+ e+e       klk e +   ++  ++iss+
  CCD24247.1 364 EKTKDLKEQINQLSMERDDLSTRRENLKTKLKSCKDELLMLNQNQTILQNKYDTVVNECDIWKNNYQTlELE-----STKLKDELK-LKDTELNSISSQ 456
                 5889**************************************************************953444.....344555554.334467899*** PP

                 X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SHE3 164 dkdidtkldsynnkkknlesieeeknkkllkkleslas 201
                  ++id +++++ +   +l++ +e+ n++l+ + e+l s
  CCD24247.1 457 LNEIDRHMSELGDENVRLKNENESLNSNLKIIEEKLHS 494
                 *********************99999877554444433 PP

  == domain 4  score: -5.9 bits;  conditional E-value: 4
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  53 ENdnLsslLkRKerrlkdlekelselkesveelklekkqlkkrlenssaseteleeeler.lkvqYdalvdsqkeYkehYqqeieeLkesleklklene 150
                 E + +ss L+  +r++ +l +e+  lk+++e+l+ + k ++++l++++++  +l++ +e+ l+ q   + ++ k+ ke Y++ +     + e+l++  +
  CCD24247.1 449 ELNSISSQLNEIDRHMSELGDENVRLKNENESLNSNLKIIEEKLHSKKSEVDQLNKTIEEsLETQ--RINETSKNLKEEYETLL----LEKEELEKKTN 541
                 33445555666666666666666666666666666666666666655555555544443213333..34444444444444322....22223333333 PP

                 SSSXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SHE3 151 kqleelqerissndkdidtkldsynnkkknlesieeeknkk 191
                 +q+ee++++i +  +di +k +++++ + + ++i+e+ ++k
  CCD24247.1 542 EQIEEHNRTIFELRNDITAKENEFKDLQDTKNEIQEQLETK 582
                 33445555554444444444333333333333333222222 PP

  == domain 5  score: -7.4 bits;  conditional E-value: 4
                 HHHHHHHHHHHHHHH...HHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  43 flenlaslkhENdnL...sslLkRKe.rrlkdlekelselkesveelklekkqlkkrlenssaseteleeelerlkvqYdalvdsqkeYkehYqqeiee 137
                 + e+  +lk+E + L   +  L++K+  ++ + ++ + el++ +   + e k l++  ++ +++ ++ ++ele+lk+qY+ + d  +        e++e
  CCD24247.1 515 INETSKNLKEEYETLlleKEELEKKTnEQIEEHNRTIFELRNDITAKENEFKDLQDTKNEIQEQLETKTKELEELKIQYEDVNDDANI----KGAEVSE 609
                 5577888999999883332345555416788888889999999999999999999999999999999999999999999998776654....3689999 PP

                 HHHHHHHHHHHHHSSSXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXX CS
        SHE3 138 Lkesleklklenekqleelqerissndkdidtkldsynnkkknlesieeeknkkllkkleslaseld.leswlelykelkel 218
                 L e l++lk+ ++     l+ +is+ ++ +d+   +y+ ++ +l+++ +e ++  l+  +  a++l+ le++      l+e+
  CCD24247.1 610 LCEDLKELKESKT----YLEGTISKLETVVDEWKTKYETQTTELKKVTVELESLQLRNSDIEAEHLKeLEHLHVNMSSLQEM 687
                 9999999998887....55667888888888888899999999999888887766666666666655455555555555554 PP

  == domain 6  score: -7.3 bits;  conditional E-value: 4
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC....CHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHH...HHHSSSXXX CS
        SHE3  68 lkdlekelselkesveelklekkqlkkrlenss....aseteleeelerlkvqYdalvds...qkeYkehYqqeieeLkesleklkl...enekqleel 156
                 +  le+ + e k+++e +++e k++  +le+++    + e+e  +ele+l+v+  +l +    ++      q+e e+Lk+ l++ k+   en++++ e 
  CCD24247.1 628 ISKLETVVDEWKTKYETQTTELKKVTVELESLQlrnsDIEAEHLKELEHLHVNMSSLQEMlkdHSTTITELQEENENLKKMLKDSKTlfhENKEENGEG 726
                 567888899999999999999999999999865221156667777888898888887443000333334456666667776665543222666665555 PP

                 XXXXXXXX...XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SHE3 157 qerissnd..kdidt.kldsynnkkknlesieeeknkkllkkleslaseldles 207
                 + +  +n+  ++id+ +++s+++ +++ ++ +++++k  +k l+ la++l ++ 
  CCD24247.1 727 EGEAPENNdeNNIDKrEIESLKKEVEEWKEKYNTHEKDTNKRLKLLAEDLYIQY 780
                 544444431256776368999999999999999999999999999998888764 PP

  == domain 7  score: -7.9 bits;  conditional E-value: 4
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHH...HHHHHHHH....HCCCHHHHHHHH....HHHHHHHHHHHHHH.....H CS
        SHE3  46 nlaslkhENdnLsslLkRKerrlkdlekelselk....esveelklek...kqlkkrle....nssaseteleee....lerlkvqYdalvds.....q 124
                 ++++l++EN+nL+ +Lk  +   ++  +e+ e +    e+++e + +k   + lkk++e    + + +e++++++     e l +qY +  +      +
  CCD24247.1 694 TITELQEENENLKKMLKDSKTLFHENKEENGEGEgeapENNDENNIDKreiESLKKEVEewkeKYNTHEKDTNKRlkllAEDLYIQYSSKHEQkvkllK 792
                 6889999******99997665555554444332211112222222222111334444441111223333333333111157788999997665222224 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHSSSXXXXXXXXXXX.XXXXXXXXXXXXXXX CS
        SHE3 125 keYkehYqqeieeLkesleklklenekqleelqerissndkdidtkldsynnkkkn 180
                 k Y ++Yq e+++L+ +   l +e e    +l+++++ + k+ + +++ +++k k 
  CCD24247.1 793 KGYENKYQGELSRLNLQNSGLIEELE----QLNKQLTAERKEKQDLIKMLDDKSKL 844
                 679***********998888888887....66777777777777777777777775 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.7    0.0012       5.2      38      82 ..     165     209 ..     157     212 .. 0.91
   2 ?    8.2   6.6   0.00031       1.4      44     118 ..     315     390 ..     303     391 .. 0.87
   3 ?   10.2   2.4   7.6e-05      0.34      88     131 ..     388     431 ..     383     444 .. 0.90
   4 ?    2.3  25.2     0.021        92      33     143 ..     448     561 ..     434     563 .. 0.82
   5 ?   14.8  16.3   3.1e-06     0.014      28     140 ..     544     653 ..     542     664 .. 0.90
   6 ?   -5.7  33.1         4   1.8e+04      38     200 .]     670     838 ..     656     838 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0012
         GAS  38 lkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyek 82 
                 +k+ +++ + + +e++++n++ +++Lk  +e v +L +ql+n e 
  CCD24247.1 165 MKQMDQAENADENETANDNSHVRKKLKLDRESVPNLTQQLNNNEM 209
                 8888899999999****************************9875 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00031
         GAS  44 rnekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqs.lknlkarlkelekelkdlkwehevleqrfekv 118
                   +k+   +++en ++++ L++    +e+ r +  + +kd +  ++   ++ k+l++++++l++e + l+ r e++
  CCD24247.1 315 DLKKRNGTLANENYQINKRLNQTVSRLENIRYKYLEVKKDYSYvMEVFDEKTKDLKEQINQLSMERDDLSTRRENL 390
                 5678888999***********************99999998751667899******************99987765 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 7.6e-05
         GAS  88 knlkarlkelekelkdlkwehevleqrfekvekerdelykkfea 131
                 +nlk++lk++++el  l +++ +l+ ++++v +e d +++++++
  CCD24247.1 388 ENLKTKLKSCKDELLMLNQNQTILQNKYDTVVNECDIWKNNYQT 431
                 79**********************************99999876 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.021
         GAS  33 eeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkar...lkelekelkdlkwehevleqrfekvekerdelykk 128
                  e++ +  + ++ ++++se+  en rlk + + ++ +++  +++l   +++  +l+++ ++    ++ ++  k+lk+e+e l  + e++ek+ +e  ++
  CCD24247.1 448 TELNSISSQLNEIDRHMSELGDENVRLKNENESLNSNLKIIEEKLHSKKSEVDQLNKTIEEsleTQRINETSKNLKEEYETLLLEKEELEKKTNEQIEE 546
                 378888899999999999999999999999999999999999999999999999988755411145667899999999999999999999999999999 PP

         GAS 129 feaaiqevqqktglk 143
                 ++++i+e++ ++  k
  CCD24247.1 547 HNRTIFELRNDITAK 561
                 999999999988777 PP

  == domain 5  score: 14.8 bits;  conditional E-value: 3.1e-06
         GAS  28 IkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdely 126
                 I++    i el++  +++e+e+++++  +++++e+L++ ++e+eeL+ q ++ + d +      a+++el + lk+lk+++  le  ++k+e   de++
  CCD24247.1 544 IEEHNRTIFELRNDITAKENEFKDLQDTKNEIQEQLETKTKELEELKIQYEDVNDDANIK---GAEVSELCEDLKELKESKTYLEGTISKLETVVDEWK 639
                 6677778999******************************************99987644...4799******************************** PP

         GAS 127 kkfeaaiqevqqkt 140
                  k+e+   e+++ t
  CCD24247.1 640 TKYETQTTELKKVT 653
                 ****9999988765 PP

  == domain 6  score: -5.7 bits;  conditional E-value: 4
         GAS  38 lkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslknlkarlkelekelkdlkwehevleqrfekvekerdelykkfeaaiqev 136
                   k+ e+   ++s +++  k+ + ++++++ee+e+L+k lk+ +     + + k+++ e e e  +   e+++ + ++e+++ke +e+++k+++  +++
  CCD24247.1 670 HLKELEHLHVNMSSLQEMLKDHSTTITELQEENENLKKMLKDSKT---LFHENKEENGEGEGEAPENNDENNIDKREIESLKKEVEEWKEKYNTHEKDT 765
                 456678888999****************************99766...6678999999************************************99999 PP

         GAS 137 qqktglknllL........ekklkalqeelEkke.aqleevlaaanldpaalsavsekleevlesKnqeIkdL 200
                  ++ +l +  L        e+k+k l++  E+k   +l+ +  +++   ++l++++++l+   ++K++ Ik L
  CCD24247.1 766 NKRLKLLAEDLyiqysskhEQKVKLLKKGYENKYqGELSRLNLQNSGLIEELEQLNKQLTAERKEKQDLIKML 838
                 9999986554444555555899999999999986368888865555556899999999999999999999876 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.6      0.44     2e+03     195     220 ..     177     202 ..     128     227 .. 0.54
   2 ?    5.5  11.6    0.0015       6.7     156     279 ..     314     433 ..     302     436 .. 0.63
   3 ?   11.3  18.7   2.5e-05      0.11     143     260 ..     389     509 ..     387     516 .. 0.78
   4 ?    8.0  22.8   0.00025       1.1     170     280 ..     513     619 ..     510     622 .. 0.78
   5 ?   14.7  24.5   2.4e-06     0.011     143     282 ..     609     758 ..     607     760 .. 0.87
   6 ?   -2.6  16.3      0.42   1.9e+03     147     239 ..     733     834 ..     727     845 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.44
        Spc7 195 sidkeeLeelreelaelkaeieekkk 220
                 + + ++   +r++l+   + + ++ +
  CCD24247.1 177 NETANDNSHVRKKLKLDRESVPNLTQ 202
                 22222222222222222222222222 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0015
        Spc7 156 elLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeae 254
                 + L+k++  l +   +++++ ++  ++le+++ ++ e+++  +  +e + e+ ++lk++i++++ e ++l +++e+l++k+++ k++       +++ +
  CCD24247.1 314 KDLKKRNGTLANENYQINKRLNQTVSRLENIRYKYLEVKKDYSYVMEVFDEKTKDLKEQINQLSMERDDLSTRRENLKTKLKSCKDELL----MLNQNQ 408
                 55666666666666666666666666666666666666665566666666666666666666666666666666666666655544333....345566 PP

        Spc7 255 rvleeckgwsesevsrlkeevkale 279
                  +l+++ +   +e + +k+++++le
  CCD24247.1 409 TILQNKYDTVVNECDIWKNNYQTLE 433
                 6777777777777777777777777 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 2.5e-05
        Spc7 143 gleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles...idkeeLeelreelaelkaeieekkkelaelqeqleeleekiee 238
                 +l+ +l++ +++  +L++++  l++ ++ +++e +  ++++++l+ ++++l++   ++ +eL+++ ++l+e++  ++e+ +e  +l+++ e+l+++++ 
  CCD24247.1 389 NLKTKLKSCKDELLMLNQNQTILQNKYDTVVNECDIWKNNYQTLELESTKLKDelkLKDTELNSISSQLNEIDRHMSELGDENVRLKNENESLNSNLKI 487
                 55566666666666666666666666666666666666655555555555555444899**************************************** PP

        Spc7 239 lkeqkseleeeiaeaervleec 260
                 ++e+ ++ ++e+ + ++++ee 
  CCD24247.1 488 IEEKLHSKKSEVDQLNKTIEES 509
                 *****************99986 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.00025
        Spc7 170 peleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesev 268
                 ++++e  ++l+ee+e+l  ++eele+ ++e++ee  +++ el ++i +k++e ++lq+ ++e++e++e+ +++ +el+ + +     ++   +++  ev
  CCD24247.1 513 QRINETSKNLKEEYETLLLEKEELEKKTNEQIEEHNRTIFELRNDITAKENEFKDLQDTKNEIQEQLETKTKELEELKIQYE----DVNDDANIKGAEV 607
                 5677778888888888888888888888888888888888888888888888888888888888888887777777777776....5556667888888 PP

        Spc7 269 srlkeevkalee 280
                 s+l e +k+l+e
  CCD24247.1 608 SELCEDLKELKE 619
                 888888888875 PP

  == domain 5  score: 14.7 bits;  conditional E-value: 2.4e-06
        Spc7 143 gleenlegleedkelLekqeeeldellpeleeeka.......eleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleelee 234
                 +l e l++l+e k+ Le   ++l+++++e +++++       +++ ele+lq ++ ++e+   +eLe l+ ++++l++ ++ +++ ++elqe+ e+l++
  CCD24247.1 609 ELCEDLKELKESKTYLEGTISKLETVVDEWKTKYEtqttelkKVTVELESLQLRNSDIEAEHLKELEHLHVNMSSLQEMLKDHSTTITELQEENENLKK 707
                 56678899999999999999999999999988888777766677788999999********************************************** PP

        Spc7 235 kieelkeqkseleeeiaeaervleec...kgwsesevsrlkeevkaleelt 282
                  +++ k+  +e +ee  e e    e+    ++++ e+++lk+ev++ +e++
  CCD24247.1 708 MLKDSKTLFHENKEENGEGEGEAPENndeNNIDKREIESLKKEVEEWKEKY 758
                 ************9999998877655411167999**********9988765 PP

  == domain 6  score: -2.6 bits;  conditional E-value: 0.42
        Spc7 147 nlegleedkelLekqeeeldellpeleeekaeleeeleklqe.........aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleeki 236
                 n ++ + dk+++e+ ++e++e ++++++++++ +++l+ l e          +++++ ++k + ++++ el++l+ + + + +el++l++ql++ +++ 
  CCD24247.1 733 NNDENNIDKREIESLKKEVEEWKEKYNTHEKDTNKRLKLLAEdlyiqysskHEQKVKLLKKGYENKYQGELSRLNLQNSGLIEELEQLNKQLTAERKEK 831
                 556666777778888888888888888888888888888877777766555455555577777777777777777777777777777777776666655 PP

        Spc7 237 eel 239
                 ++l
  CCD24247.1 832 QDL 834
                 554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3614  (0.201573); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                       210  (0.0117129); expected 17.9 (0.001)
Passed Fwd filter:                       107  (0.00596798); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 2.83u 0.36s 00:00:03.19 Elapsed: 00:00:00.73
# Mc/sec: 3486.63
//
Query:       CCD24248.1  [L=462]
Description: hypothetical protein NDAI_0C05890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-50  168.4   0.0      8e-50  167.8   0.0    1.3  1  Asp_protease     Aspartyl protease
    3.2e-18   66.1   0.0      7e-18   65.0   0.0    1.6  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
    4.7e-10   40.0   0.4    5.7e-09   36.5   0.1    2.3  2  Asp_protease_2   Aspartyl protease
    9.4e-08   31.8   0.0    2.2e-07   30.6   0.0    1.6  1  UBA              UBA/TS-N domain
     0.0047   17.2   0.1      0.024   14.9   0.0    2.3  2  RVP              Retroviral aspartyl protease
     0.0075   16.0   0.0      0.036   13.8   0.0    2.0  1  RVP_2            Retroviral aspartyl protease
  ------ inclusion threshold ------
      0.036   14.6   0.0      0.079   13.4   0.0    1.5  1  UN_NPL4          Nuclear pore localisation protein NPL4
       0.72    9.0   4.4        1.6    7.8   4.6    1.4  2  SOG2             RAM signalling pathway protein


Domain annotation for each model (and alignments):
>> Asp_protease  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.8   0.0   3.5e-53     8e-50       1     124 []     179     301 ..     179     301 .. 0.98

  Alignments for each domain:
  == domain 1  score: 167.8 bits;  conditional E-value: 3.5e-53
  Asp_protease   1 qeaveenlekalehtPeafvkvtmlyinvevngvkvkafvdsGaqksilskkcaercglmrlldtrfkgiakGvGtkkilGrvhsaevklgdlflpv 97 
                   q+a++e+l++ale+tPe+f +v mly+n+evng++vkafvdsGaq++i+s k ae+ gl+rl+d+r++g a+GvGt k lGr+h+a+vk++ +f+p+
    CCD24248.1 179 QQAINEQLQNALEYTPEVFFQVPMLYVNLEVNGYPVKAFVDSGAQSTIMSVKLAEKTGLTRLIDKRYAGEARGVGTGKFLGRIHQAQVKIETQFVPC 275
                   689********************************************************************************************** PP

  Asp_protease  98 alsvledkevdlllGldllkrhqviid 124
                   ++sv++  ++d+llGld+l+rh+ +id
    CCD24248.1 276 TFSVID-IDIDILLGLDMLRRHRGCID 301
                   *****7.68****************98 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   3.1e-21     7e-18       1      92 []     205     295 ..     205     295 .. 0.81

  Alignments for each domain:
  == domain 1  score: 65.0 bits;  conditional E-value: 3.1e-21
                      EEEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-E.EEEEEEEEE.EETTEEEEEEEEEES.SSSEEEEHHHHHH CS
  gag-asp_proteas   1 vkvkingkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveak.rvrldsvkiggielrnvsavvlege.lddlLLGldfLkr 92 
                      v++++ng pvk++vD+GA+sti+s +lae++gl+r++d  k+ ++ a g+ ++k  +r+++ ++ +ie++ v++++   +   d+LLGld+L+r
       CCD24248.1 205 VNLEVNGYPVKAFVDSGAQSTIMSVKLAEKTGLTRLID--KRYAGEARGVGTGKfLGRIHQAQV-KIETQFVPCTFSVIDiDIDILLGLDMLRR 295
                      6899*********************************9..688999999887644666666666.3566666666555442789********97 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.28   6.3e+02      24      52 ..      56      84 ..      49     105 .. 0.73
   2 !   36.5   0.1   2.6e-12   5.7e-09       1      89 [.     205     291 ..     205     292 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.28
  Asp_protease_2 24 spelaeklglkvreseltvrvsgaggevk 52
                    ++++ ++lglk++++ l ++ +g gg+++
      CCD24248.1 56 TTKTLKELGLKKDDLLLIRSKIGNGGAQQ 84
                    5778999*******965455455555433 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 2.6e-12
  Asp_protease_2   1 vpvtinGkpvrfllDTGasttlispelaeklglkv.reseltvrvsgaggevkarlvrldslklggltlknvpalvldlgeeidglLGmd 89 
                     v++++nG pv++++D+Ga++t++s +laek gl++  ++++   ++g+g  ++  +++  ++k+ + ++   +++v+d    id+lLG+d
      CCD24248.1 205 VNLEVNGYPVKAFVDSGAQSTIMSVKLAEKTGLTRlIDKRYAGEARGVGTGKFLGRIHQAQVKIET-QFVPCTFSVID--IDIDILLGLD 291
                     6789*****************************873455567777787777777777777888888.67789999999..88******98 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   9.9e-11   2.2e-07       5      34 ..     428     457 ..     425     460 .. 0.90

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 9.9e-11
                 HHHHHHHTTS-HHHHHHHHHHTTTSHHHHH CS
         UBA   5 aiqrLveMGFdreevveALratgnNeErAv 34 
                 +i +L+++GF+r++v+ AL +tg+N E A+
  CCD24248.1 428 TIKQLMDLGFPRNQVITALNRTGGNAEYAA 457
                 799************************887 PP

>> RVP  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05     0.024       7      94 ..     205     294 ..     199     301 .. 0.56
   2 ?   -2.8   0.0       3.6     8e+03      29      49 ..     317     337 ..     311     362 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
                 EEEEETTEEEEEEE-TTBSSEEEES---SCE........EEEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEEESTTSSSE.EE-HHHHC CS
         RVP   7 lkvkiggkyieallDtGAdatviseedwPen....wpvkkaetllqGiggatevqqskaievllieekfrgevsplilpalpvn.ilGrdlLq 94 
                 +++ ++g +++a +D+GA+ t++s +   ++       k      +G+g+++   ++++ +v + ++ +    ++ ++  + ++ +lG d+L+
  CCD24248.1 205 VNLEVNGYPVKAFVDSGAQSTIMSVKLAEKTgltrLIDKRYAGEARGVGTGKFLGRIHQAQVKIETQFVPC--TFSVID-IDIDiLLGLDMLR 294
                 56777888**************9866544430000233444455556666655555555555555544444..222222.2222466666666 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.6
                 EES---SCE.....EEEEEEEE CS
         RVP  29 iseedwPenwpv.kkaetllqG 49 
                 +se+++P+n p+  +++ ++  
  CCD24248.1 317 LSESEIPKN-PIfDQEKGTITA 337
                 778888988.775666555554 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.6e-05     0.036      26     126 ..     207     305 ..     199     312 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
       RVP_2  26 flvnsipatvLfdsGasHsFiskafvsklklkveaLstpllietP.vg.ssvtakeicksveieiqgiefladlilLdlkdlDviLgmdWLsknkanid 122
                 + vn++p +   dsGa    +s + ++k +l+   ++++   e+  vg +++  +    +v+ie q  + ++ +i  d+ d+D++Lg+d L ++++ id
  CCD24248.1 207 LEVNGYPVKAFVDSGAQSTIMSVKLAEKTGLTR-LIDKRYAGEARgVGtGKFLGRIHQAQVKIETQFVPCTFSVI--DI-DIDILLGLDMLRRHRGCID 301
                 679***************************975.45666665554133123443444445555555555555555..44.68****************9 PP

       RVP_2 123 caek 126
                   ++
  CCD24248.1 302 LEKN 305
                 8765 PP

>> UN_NPL4  Nuclear pore localisation protein NPL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.5e-05     0.079      18      77 ..      17      73 ..      15      76 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.5e-05
                EEE-TTSBHHHHHHHHHHHSS-STTT-EEESSTTCGCCCSSSSSSCCCTCH--TT-EEEE CS
     UN_NPL4 18 ieisekstlktllekvaeelkfsengfslylernkttelvssssksvkevglkhGdmlyL 77
                iei+e+  +++l+ + +  ++f+ n   ly +    t+l  +  k++ke+glk+ d+l +
  CCD24248.1 17 IEINEDMSIRDLKALLEIDCHFDANRHDLYCNA---TLLDIETTKTLKELGLKKDDLLLI 73
                899***************************985...677779**************9975 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.4   5.3e+03     355     374 ..     170     191 ..     143     199 .. 0.52
   2 ?    7.8   4.6   0.00072       1.6     254     355 ..     322     423 ..     289     446 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.4
        SOG2 355 intlaa.vDeq.lletletavk 374
                  +  ++ +D+q + e+l++a +
  CCD24248.1 170 QKRITElIDQQaINEQLQNALE 191
                 2222224444444444444444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00072
        SOG2 254 aspaangaqsetsersasssg.vqssasstPlgegstsppgalsrqslsttgststltsssksrsssrsntnasastprslattpappasaesfastlt 351
                 +  ++ + q + ++++a +s+ ++++++ +P+ ++ + ++   + + ++ttg+t+ ++  +  + +s+ ++ a    p+s ++t+ap+a+  + + t t
  CCD24248.1 322 IPKNPIFDQEKGTITAAPESApSNKKSPEVPVPTTGSYNS-GVQMPKTATTGKTEITKNLPPPTTTSSIPAAAPGAVPSSVPKTAAPTATNPAPTATAT 419
                 5567788899999999999999999999999999988884.4555556788888888887777787888888888888888888884444333222222 PP

        SOG2 352 asri 355
                 a+r+
  CCD24248.1 420 AQRS 423
                 2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3378.34
//
Query:       CCD24249.1  [L=826]
Description: hypothetical protein NDAI_0C05900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-56  191.1   1.4    5.2e-56  190.0   1.4    1.6  1  UCH           Ubiquitin carboxyl-terminal hydrolase
    8.7e-23   81.4   5.6      2e-22   80.2   5.6    1.6  1  UCH_1         Ubiquitin carboxyl-terminal hydrolase
    6.2e-06   26.7   0.0    2.4e-05   24.8   0.0    2.0  2  Rhodanese     Rhodanese-like domain
  ------ inclusion threshold ------
      0.029   14.1   0.5      0.082   12.7   0.5    1.7  1  Cys_rich_KTR  Cysteine-rich KTR
        0.1   12.1   0.0       0.22   11.0   0.0    1.5  1  MazG_C        MazG C-terminal domain
       0.11   12.7   2.5        0.4   10.9   2.5    1.9  1  NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
       0.13   12.7   0.3         11    6.5   0.0    3.2  3  DUF3837       Domain of unknown function (DUF3837)


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.0   1.4     2e-59   5.2e-56       1     257 []     458     821 ..     458     821 .. 0.93

  Alignments for each domain:
  == domain 1  score: 190.0 bits;  conditional E-value: 2e-59
                 -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH.........SH-CC...EE--HHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxx...xxxxxxxxxxxxx RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell.........ksksk...avsPkklkktlsk 87 
                 tGl+N+ n+Cymn+v+QcL+s++ l+++ l+       +   +++n +n+lg+kg l+k++++l++ ++             +    v+P ++k++++ 
  CCD24249.1 458 TGLENVKNSCYMNCVIQCLLSTHDLTKLYLT-------NAFLTQINVENKLGSKGFLSKNFANLIQTMYkksafqpynP---NflhPVAPLEFKNACGM 546
                 7*************************88888.......67788889999********************7655555542...04449999********* PP

                 HSGGGTSSSTCEHHHHHHHHHHHHHHHHCC........................HCCCHHHHHHCCCTTSHHHHHH-EEEEE................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
         UCH  88 laksfsgykqqDaqEflaflLdqlhedlnr........................evaeekwkkhlkrndslitdlfegqlks................. 145
                 +++  + ++ qD+qEf++flLd+lhedln+                          +e +w++ l++n s+i +lf+gq+ s                 
  CCD24249.1 547 MNSIYAESTEQDCQEFCEFLLDGLHEDLNQcsgnprpkelsaneaelreslsmrIASEIEWESFLTTNFSPIINLFQGQYASrlqclicqhtsttyqpf 645
                 *****************************************************85567889************************************** PP

                 ....................................................EEEEEEB-SEEEEEEESEEETEEEEE--SEEB--SEEE-GGGBSS-B CS
                 ....................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 146 ....................................................klklkrlPeiLiihlkRfsynssksKlntkvefpeeldlssylaeek 192
                                                                     +lk++rlP+ Liih+kRf      +K+n  v++p +ldl+s++ ++ 
  CCD24249.1 646 sllsipvpsmvfsngqtcnildcfkeftkcerldndekwfcpkcrrkqistkQLKITRLPKNLIIHFKRFDNFM--NKNNIFVQYPYQLDLTSLWVNDY 742
                 **********************************************************************9755..5***************9888777 PP

                 TTS-TCS-B.............EEEEEEEEEESCTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCCCTT.CEEEEEE CS
                 xxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
         UCH 193 kkkteekkk.............YeLiavvvHsGslssGHYvayiknekngkWykydDetvkevkeeeevls.sayiLfY 257
                 + k + + +             Y+L av++HsG+l+sGHY+ay+ +     W+++dD +  +vk  +e l+ +ay+LfY
  CCD24249.1 743 DGKLPPNFNepppsrgqtppfkYKLNAVSCHSGNLGSGHYTAYVDKGLYRGWFRFDDASYRPVKFGTEFLTpDAYLLFY 821
                 7776655558888999999999***********************888888*************9999999******** PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   5.6     8e-26     2e-22       2     318 ..     459     800 ..     458     801 .. 0.78

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 8e-26
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplrnlalshl.akeckkehcLlcElgflf.......dmldkakglncqasnFlralssipeasalglileeeeetek 92 
                 GLEn  + +Y+N+++Q+l  +  l++l+l  +  ++ + e++L    gfl        + + k++  +  + nFl+ +  ++ ++a g++ +       
  CCD24249.1 459 GLENVKNSCYMNCVIQCLLSTHDLTKLYLTNAfLTQINVENKLGS-KGFLSknfanliQTMYKKSAFQPYNPNFLHPVAPLEFKNACGMMNS------- 549
                 9********************999976665541456677766643.45555555666666666665566678*****************933....... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  93 ssaislssliqsfnrflldqlekelketkkns..............................seeesaieqllgtkaettirclkCgseksrksstlvl 161
                   a+s+ +  q+f++flld l+++l++ + n+                              +++ s+i +l++ ++ ++++cl C+++++  + +  l
  CCD24249.1 550 IYAESTEQDCQEFCEFLLDGLHEDLNQCSGNPrpkelsaneaelreslsmriaseiewesflTTNFSPIINLFQGQYASRLQCLICQHTSTTYQPFSLL 648
                 33445667789****************99988******************************999999999***************************9 PP

                 xxxxx.xxxxx.xxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
       UCH_1 162 dlkyP.kpsne.kkeakvtfasilkssler...ekttrawCekCkryqpteqrktvknlPpvLalnakleeeeelelwktknwlp.leiklsldedknl 254
                 ++  P +     ++ ++ ++ ++ k++ +    +++++ +C+kC+r+q  +++ ++++lP+ L+++ k++ ++   +++++n +    ++l+l++    
  CCD24249.1 649 SIPVPsM---VfSNGQTCNILDCFKEFTKCerlDNDEKWFCPKCRRKQISTKQLKITRLPKNLIIHFKRF-DN---FMNKNNIFVqYPYQLDLTSL--W 738
                 8855532...13567778999999999887566788899*****************************96.43...33333333223444433332..1 PP

                 .......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 255 .......eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWylFNDf 318
                           + +e+ +++ ++  ++Y+L++v +h g+ + sgh+ ++v    k l        W+ F+D 
  CCD24249.1 739 vndydgkLPPNFNEPPPSRGQTPPFKYKLNAVSCHSGNLG-SGHYTAYVD---KGLY-----RGWFRFDDA 800
                 335555434444555557788999*************555.********9...3332.....589999996 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   9.3e-09   2.4e-05       2     106 ..     171     300 ..     170     301 .. 0.74
   2 ?   -1.9   0.0       1.9   4.9e+03      21      37 ..     381     405 ..     379     429 .. 0.64

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 9.3e-09
   Rhodanese   2 akelkellekgkva..llDvRppeeYekghIpgAvnv......skdtlsrakkseapllelpeellel..gidnkktvvvycdgggraaaaaallk... 87 
                 +++l++ll++ k    l+DvR++ e+++ hI   + +       k t+++ + ++ +ll+   + +++  ++++ + +v+y ++ ++++  ++++    
  CCD24249.1 171 PEKLHDLLSSHKRNllLIDVRTRKEFDTLHIDAPIILpigplsFKSTFTDLQIEQTSLLTSTFQERNYfkKRNQFRYIVLYTKDDNDTTYYYTQVIslf 269
                 5677777755443356***************9999999897766666666666666666666666666*99****************666655444567 PP

   Rhodanese  88 .........k...lGyknvsvldGGfkawke 106
                          +     ++ +++l+GG+++w +
  CCD24249.1 270 niltiaaskRnidQICPSIFILKGGITSWVQ 300
                 777777654144333588***********75 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.9
   Rhodanese  21 ppeeYekghIpgAvnv........s 37 
                 p++ Y+++ Ip+ ++         +
  CCD24249.1 381 PQALYNHQVIPNLIHRapldtesnN 405
                 556699999*****99754332222 PP

>> Cys_rich_KTR  Cysteine-rich KTR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.5   3.2e-05     0.082      29      48 ..     685     703 ..     680     707 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
  Cys_rich_KTR  29 fCPKCkqetlinvkqlkiev 48 
                   fCPKC++++ i+ kqlki+ 
    CCD24249.1 685 FCPKCRRKQ-ISTKQLKITR 703
                   9******98.799****986 PP

>> MazG_C  MazG C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.5e-05      0.22      50      73 ..      59      82 ..      40      93 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.5e-05
      MazG_C 50 dnsseeDgYrfHDvfHlayaavLg 73
                dn +++D+Y+fHDv+  +  a+L 
  CCD24249.1 59 DNFKTKDEYQFHDVYRTSESAYLY 82
                9**************999999886 PP

>> NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.5   0.00015       0.4      11      64 ..     668     725 ..     662     730 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00015
  NOB1_Zn_bind  11 ChaCfkvt...kdmtkkFCpkCGnktLkrvavsvden.gelklhlkknfqlnlrGtky 64 
                   C   f+ +    + +k FCpkC  k++   ++ +++   +l +h+k+  ++ ++++++
    CCD24249.1 668 CFKEFTKCerlDNDEKWFCPKCRRKQISTKQLKITRLpKNLIIHFKRFDNFMNKNNIF 725
                   444344444435689*************999999998788******999988888877 PP

>> DUF3837  Domain of unknown function (DUF3837)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0043        11      59      99 ..       6      46 ..       2      47 .. 0.87
   2 ?   -0.7   0.1      0.76     2e+03      59      85 ..     121     147 ..     107     176 .. 0.66
   3 ?    2.0   0.0      0.11   2.8e+02      23      49 ..     536     562 ..     516     586 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0043
     DUF3837 59 elkkvspkdekekklikllkdYepdeevdeqmkellklGye 99
                ++k+ + ++ ++k+l++l++++ +d++++++ + +l+ G e
  CCD24249.1  6 NAKNPTDSNPNIKRLNELVSKFVKDDDLNATLDVMLQEGVE 46
                556667788899************************99975 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.76
     DUF3837  59 elkkvspkdekekklikllkdYepdee 85 
                  lkk+ ++d +++++   l ++    e
  CCD24249.1 121 TLKKTVQEDRRIQEIETFLAKFSTAYE 147
                 556666666666666666666554433 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.11
     DUF3837  23 gnyElayalGllakllglpeieekeel 49 
                  ++E+  a+G+++ +++  + ++ +e 
  CCD24249.1 536 APLEFKNACGMMNSIYAESTEQDCQEF 562
                 689***********9998554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       906  (0.0505327); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5991.71
//
Query:       CCD24250.1  [L=408]
Description: hypothetical protein NDAI_0C05910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-98  328.4   6.4    4.6e-98  328.2   6.4    1.0  1  FTR1      Iron permease FTR1 family
     0.0047   15.8   0.1     0.0095   14.7   0.0    1.4  1  Rft-1     Rft protein
  ------ inclusion threshold ------
       0.72    9.7   2.2       0.79    9.6   0.2    2.1  2  B12D      NADH-ubiquinone reductase complex 1 MLRQ subunit


Domain annotation for each model (and alignments):
>> FTR1  Iron permease FTR1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.2   6.4  7.7e-102   4.6e-98       2     305 ..      10     322 ..       9     323 .. 0.98

  Alignments for each domain:
  == domain 1  score: 328.2 bits;  conditional E-value: 7.7e-102
        FTR1   2 faiflvvlregleaslivsvllallkqtqretdk.......lqvwagialavllalaigqafasitaalqkdkalieeellegvlsliavvviswmilw 93 
                 +a+f+vv+re+lea++ivsvll++l q+  ++d        +qvw+g++l+++++l+ig++f++++++lqkd++  +e+l+eg++++ia+v+is m++ 
  CCD24250.1  10 VAVFFVVFRECLEAVIIVSVLLSFLNQAVGDKDVklykrlkRQVWIGVFLGFFICLGIGAGFIGAYYSLQKDIFGSAEDLWEGIFCMIATVMISLMGIP 108
                 789************************88888888999999********************************************************** PP

        FTR1  94 mrrvgkklkeeveqklakavaeiknrekaaqkgekgsekwalfilsFlivlREGlEavLfvaaivaytvk.rvsalilgvvlGaliavvlglliyrglv 191
                 m+r ++k+k+++++k+a ++ e   r+++ +k+  +s+++a+fil+F++vlREGlEav+fva+++++t++ ++sa++l+v +G++++ ++g+l+y+g++
  CCD24250.1 109 MLR-LNKMKGKWRVKIALSLIEVPKRKRDFFKITYLSRRYAMFILPFITVLREGLEAVVFVAGAGITTQGsHASAYPLPVFVGLIAGGAVGVLLYYGAS 206
                 ***.*****************999999999********************************************************************* PP

        FTR1 192 klslqsffilegflLllvaagLfsvg..tlellekaeacngkdyiefkkskslskisllslllvaflavereg.leivlaliGwantgplg.livyaav 286
                 + s q+f+++++ +L+l++agLfs g  ++e ++++++ +g+d++e ++++++++i++ ++++v+++++e ++ ++i++al+Gw+ntg+l+ +++y+++
  CCD24250.1 207 RSSMQIFLVISTSILYLISAGLFSRGawYFENYRFNKK-TGGDASESGDGNGSYNIKK-AVYHVNCCNPELDNgWDIFNALLGWQNTGYLSsVLCYNVY 303
                 **************************************.*******************.*************99************************* PP

        FTR1 287 wlvvlillgllliklgvrl 305
                 w++++i+l l+++++++++
  CCD24250.1 304 WITLMIFLALMIYEEKRGH 322
                 **************99987 PP

>> Rft-1  Rft protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.6e-06    0.0095      60     173 ..      32     159 ..      26     211 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.6e-06
       Rft-1  60 avlrikskkkkseslqkvvnlalipvligivlsivli....lwqyslsneellqlpyfklsvllvalsiiiellseplyvvaqaelnvklrskleslav 154
                 + l ++  +k+ + ++++   ++i v++g+++++ +       +ysl+++ + +++     ++ +++ ++i l+  p+  +++++ + +++++l  + v
  CCD24250.1  32 SFLNQAVGDKDVKLYKRLKRQVWIGVFLGFFICLGIGagfiGAYYSLQKDIFGSAEDLWEGIFCMIATVMISLMGIPMLRLNKMKGKWRVKIALSLIEV 130
                 556655667777788889999**********999887655456699************************************************99999 PP

       Rft-1 155 lvrclvtfaiivlfekea..........k 173
                   r   +f i++l++++a          +
  CCD24250.1 131 PKRKRDFFKITYLSRRYAmfilpfitvlR 159
                 99999999999999888755555555554 PP

>> B12D  NADH-ubiquinone reductase complex 1 MLRQ subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.74   4.4e+03      14      26 ..      65      76 ..      59      81 .. 0.46
   2 ?    9.6   0.2   0.00013      0.79       2      27 ..     179     204 ..     178     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.74
        B12D 14 agvggavfylvRl 26
                +g+ ga f ++++
  CCD24250.1 65 LGI-GAGFIGAYY 76
                433.344444443 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00013
        B12D   2 rpeliPLfvfigagvggavfylvRll 27 
                 + + +PL vf+g+ +ggav +l+++ 
  CCD24250.1 179 HASAYPLPVFVGLIAGGAVGVLLYYG 204
                 6788******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3139.22
//
Query:       CCD24251.1  [L=339]
Description: hypothetical protein NDAI_0C05920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-17   61.3   0.0    4.3e-14   52.4   0.0    2.1  2  adh_short      short chain dehydrogenase
    9.9e-09   35.3   0.1    3.2e-08   33.7   0.0    1.7  2  KR             KR domain
    1.7e-05   24.4   0.0    2.3e-05   24.0   0.0    1.1  1  Epimerase      NAD dependent epimerase/dehydratase family
  ------ inclusion threshold ------
      0.029   13.8   0.0      0.041   13.3   0.0    1.2  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   9.5e-18   4.3e-14       1     144 [.      39     190 ..      39     194 .. 0.83
   2 !    7.1   0.0   0.00075       3.4     145     191 ..     212     262 ..     204     266 .. 0.77

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 9.5e-18
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEE.E-TTTSHHHHHHHHHHHHHHH..SSESEEEE---SS--SS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalai.qvDvtdreevealvekavkkl..gkldvLvnNAGitgsgp 92 
                 k+++vtG   GIG+++ k l++++++v+ v r+++k  ++ +e  +e    + ++++i  +D  d + v+ + +k+++ +  ++l+++++NAG+  +++
  CCD24251.1  39 KTAIVTGSNTGIGLQVMKLLYSKNCNVLSVVRTKSKGDAARDETIAEfptsKGSITVIgGCDYLDLTTVKPAGSKIKDIIgdKPLNLIIHNAGL--MAS 135
                 79********************************999988888777777654555544279*******************8889**********..444 PP

                 GGGCSHHH.HHHHHHHHTHHHHHHHHHHHHHHH..HCTTEEEEEEEEGGGTSB-T CS
   adh_short  93 fselseee.wervievNltgvflltravlpaml..kqssGrIvnvsSvagkvpva 144
                 ++  ++++ +e++++vN++g  ll + + p +l  +    rIv vsS a + +++
  CCD24251.1 136 VNTATSKQgYEAMFQVNVMGSQLLQHFLDPIFLkkDDDLKRIVWVSSGAHLLGFK 190
                 444555555************99888888888856666789******99776665 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00075
                 TBHHHHHHHHHHHHHHHHHHHHHGGGT.....EEEEEEEESSBSSHHHHHHC CS
   adh_short 145 gvaaYsAsKaavagltrslakelaptg.....irvnavaPGlvdTdmakelr 191
                   + Y+ sKaa ++ ++++a   +++      ++v +++PG ++Td++++++
  CCD24251.1 212 ASTLYGQSKAANIMQAKAWASKNKEKVeevgcVSV-SCYPGNLRTDLQRDWN 262
                 5679****************998887655333333.468********99877 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   7.2e-12   3.2e-08       3     144 ..      41     190 ..      39     193 .. 0.88
   2 ?   -1.3   0.0      0.39   1.8e+03      80     108 ..     213     241 ..     203     246 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 7.2e-12
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE-.---TT-HHHHHHHHHHHHHHS..S---EEEE---------TT CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevv.aaDvsdkdavealleeikaee..ppikGvihaAgvlrdklle 98 
                  ++tG   g+Gl++++ l++k  + l ++  +++ d++ +++iae+  +  +++v+  +D  d + v+ + ++ik+    +p++ +ih Ag+++    +
  CCD24251.1  41 AIVTGSNTGIGLQVMKLLYSKNCNVLSVVRTKSKGDAARDETIAEFPTSKGSITVIgGCDYLDLTTVKPAGSKIKDIIgdKPLNLIIHNAGLMASVN-T 138
                 69******************999999888777788999999*****9997777776369***********99999876789**********998765.5 PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTT......S--SEEEEEEEHHHHH--T CS
          KR  99 emtaedleqvlapKvkGawnLhelled......esldffvlfSSiagllgsa 144
                  ++++ +e++++  v G++ L+++l +      ++l+ +v +SS a llg +
  CCD24251.1 139 ATSKQGYEAMFQVNVMGSQLLQHFLDPiflkkdDDLKRIVWVSSGAHLLGFK 190
                 678899****************9998777777799**************976 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.39
                 S---EEEE---------TTT--HHHHHHH CS
          KR  80 ppikGvihaAgvlrdklleemtaedleqv 108
                 +++ G  +aA +++ k+ +++++e++e+v
  CCD24251.1 213 STLYGQSKAANIMQAKAWASKNKEKVEEV 241
                 55667778888888888888888888876 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   5.2e-09   2.3e-05       2     161 ..      42     235 ..      41     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 5.2e-09
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..............EEEE--TT-HH....HHHHHHHHHT-SEEEE--S.---HHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl..............elveldltdrs....alerlfkeeqpdavihlAa.vggvaass 81 
                 +VtG +  iG +++k l +k+ +v+ + r +s++  ar+e++                 +ldlt  +    ++++++ ++  + +ih A+  ++v++  
  CCD24251.1  42 IVTGSNTGIGLQVMKLLYSKNCNVLSVVRTKSKGDAARDETIaefptskgsitvigGCDYLDLTTVKpagsKIKDIIGDKPLNLIIHNAGlMASVNTAT 140
                 8*************************************9999**********98885556666654455669*****************9988887655 PP

                 HSH..HHHHHHHTHHHHHHHHHHH......HHTCTEEEEEEE.GG.....GGTSCSSSS.BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHHT CS
   Epimerase  82 edp..adfieknlqgtlnlleaar......kagvkrllflsS.se.....vYGkdaeqp.keettltgplkpnspYaaaKlageklveayaaqyg 161
                 +++  +++++ n++g++ l + +       + ++kr++ +sS ++      YG + e p  e  + ++    ++ Y+ +K+a   +++a+a +++
  CCD24251.1 141 SKQgyEAMFQVNVMGSQLLQHFLDpiflkkDDDLKRIVWVSSgAHllgfkEYGINWEDPvFENCSVKERPSASTLYGQSKAANIMQAKAWASKNK 235
                 5441167889*******999999988887666999*******63322222566666678555555556669******************998875 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   9.2e-06     0.041       2     169 ..      43     232 ..      42     244 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.2e-06
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEE....E--TT-....HHHHHHHHHHHT-SEEEE...--S-- CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklh....kgDltD....ssslerllaevqpdevyn...LAAqs 86 
                    +TG +  iG  +++lL +k+ +v  +vr +s+ +++r e++a+ p +  +++++++    + Dlt      s++++++ +   + +++   L A  
     CCD24251.1  43 VTGSNTGIGLQVMKLLYSKNCNVLSVVRTKSKGDAARDETIAEFPTS--KGSITVIggcdYLDLTTvkpaGSKIKDIIGDKPLNLIIHnagLMASV 136
                    8999889***********************************99975..567775522224566543333457788999999999***33333555 PP

                    -HHHHTTSHHHHHHHHTHHHHHHHHHHHHC...T..TTSEEEEEEEGGG......G-S-SSSSB-TTS----....-SHHHHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd  87 hVdvsfekPeytaevnvlGtlrLLeairal...glekkvrfyqaStsEv......YGkvqevpqtEttpfyP....rsPYaaaKlyadwivvnyre 169
                      ++s +  e++++vnv+G + L      +   + ++ +r++ +S+         YG   e p+ E+  ++        Y+ +K++  + ++++  
     CCD24251.1 137 NTATSKQGYEAMFQVNVMGSQLLQHFLDPIflkKDDDLKRIVWVSSGAHllgfkeYGINWEDPVFENCSVKErpsaSTLYGQSKAANIMQAKAWAS 232
                    66788899999********98876655555111333458888888875333333388888888878766553112256788888888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2571.82
//
Query:       CCD24252.1  [L=453]
Description: hypothetical protein NDAI_0C05930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.059   13.5   0.4       0.47   10.6   0.0    2.4  2  Suv3_N    Suv3 helical N-terminal domain


Domain annotation for each model (and alignments):
>> Suv3_N  Suv3 helical N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.6e-05      0.47      21      56 ..     144     180 ..     136     203 .. 0.82
   2 ?   -0.3   0.1     0.064   1.2e+03      25      58 ..     413     445 ..     399     453 .] 0.73

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.6e-05
                 -------HHHHHHHHHHHHH-HHHHHHHH.HTT--HH CS
      Suv3_N  21 eltekldkeeiskvLneFlrrkaireLak.enGldek 56 
                 + te +d +  +k+L+eF++++++r+L++ ++Gl+e 
  CCD24252.1 144 NATEVVDLSMSNKILSEFVKSHKVRDLSEnDEGLEEV 180
                 5567777788899**************9636899864 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.064
                 ---HHHHHHHHHHHHH-HHHHHHHHHTT--HHHH CS
      Suv3_N  25 kldkeeiskvLneFlrrkaireLakenGldeklf 58 
                 ++ ++e +++Lne ++rk  +eL +e  l  kl 
  CCD24252.1 413 SIMRNEFKRMLNE-TQRKYEKELNEERQLRVKLE 445
                 5667888888888.56777799999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1833  (0.102237); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3323.96
//
Query:       CCD24253.1  [L=309]
Description: hypothetical protein NDAI_0C05940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-38  131.1   0.1    9.3e-38  130.8   0.1    1.1  1  Metallophos    Calcineurin-like phosphoesterase
  ------ inclusion threshold ------
      0.015   15.5   0.0       0.02   15.1   0.0    1.3  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d
        0.1   12.3   0.1       0.13   12.0   0.1    1.2  1  8TM_micro      8TM Microsporidial transmembrane domain


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.1   1.6e-41   9.3e-38       2     201 ..      46     237 ..      45     240 .. 0.95

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 1.6e-41
                  EEEEEESBTBTTCCTHHHHHHHHHHHH..HHHTTESEEEEESTSSSSS..HHHHHHHHHHHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl..lreekpdlvllaGDlvdrg..dlekellellaalvkypipvylllGNHe........gfeeellnkygy 87 
                  +++++gD+H     gql+dll+l+d+     e+ ++++l  GD+vdrg  +le+ +l ll+++++yp+++ l++GNHe        gf++e+ +kyg+
   CCD24253.1  46 PVTICGDIH-----GQLHDLLTLFDKSggV-EKTRYIFL--GDFVDRGfySLES-FLLLLCYKLRYPDRITLIRGNHEtrqitkvyGFYDEIMRKYGN 134
                  699******.....**********999633.34889999..*************.99999*************************************9 PP

                  HHHHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCH CS
  Metallophos  88 lgifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgd 181
                   +    +wr+++evf++l l +++++   ++++hGg spe+ +++d+++s+++ +eap++g   d++++d        ++ v ++s  +rg+g lfg 
   CCD24253.1 135 CN----VWRYCCEVFDYLSLGAIIND--SIFCVHGGlSPEI-NTIDEIRSIDRKQEAPHEGamcDLLWSD--------PDDVDTWSLSPRGAGFLFGK 217
                  76....89******************..********99999.****************************........******************** PP

                  HHHHHHHHHTTESEEEEESS CS
  Metallophos 182 ealedllkkygvdlvisGHt 201
                   +++++l k++v l+ ++H+
   CCD24253.1 218 GEVDKFLMKNNVELIARAHQ 237
                  *******************7 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   3.4e-06      0.02       4      63 ..      48     119 ..      46     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.4e-06
  Metallophos_2   4 aiiSDlHsnldaleavlealkevgvdaiihaGDleeeepevleellela........pvlaVrGNnD....e 63 
                     i  D+H++l+ l +++++  +v+  + i++GD+ ++ + +le +l l+        +++ +rGN++     
     CCD24253.1  48 TICGDIHGQLHDLLTLFDKSGGVEKTRYIFLGDFVDRGFYSLESFLLLLcyklrypdRITLIRGNHEtrqiT 119
                    6899*****************************966666688888888888899999**********33331 PP

>> 8TM_micro  8TM Microsporidial transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.1e-05      0.13      57      95 ..      67     106 ..      17     150 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
   8TM_micro  57 slllkskdYfllssllPndliSlenllivlikkk.yeell 95 
                 s  ++ ++Y++l  ++   ++Sle +l+ l++k  y + +
  CCD24253.1  67 SGGVEKTRYIFLGDFVDRGFYSLESFLLLLCYKLrYPDRI 106
                 4568899************************976666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2488.33
//
Query:       CCD24254.1  [L=1080]
Description: hypothetical protein NDAI_0C05950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-49  168.1   1.5    2.4e-49  168.1   1.5    3.2  2  UCH       Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -20.4  23.6         1   1.8e+04      56      70 ..     113     137 ..      79     413 .. 0.68
   2 !  168.1   1.5   1.4e-53   2.4e-49       2     257 .]     567    1076 ..     566    1076 .. 0.85

  Alignments for each domain:
  == domain 1  score: -20.4 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHH..........S CS
                 xxxxxxxxxxxxxx..........x RF
         UCH  56 elakalkdlfkell..........k 70 
                 ++   ++  +++++          +
  CCD24254.1 113 NMNGMMNPTMNNMNskhhnnsnnnN 137
                 3444444444444433322222211 PP

  == domain 2  score: 168.1 bits;  conditional E-value: 1.4e-53
                  EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC...................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................... RF
         UCH    2 GlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkke...................................................... 44  
                  G++N++n C+m+s+lQ+L+s++++ d+l+ +++++ +sr   +                                                      
  CCD24254.1  567 GIVNVANICFMSSILQMLLSCKPFIDVLNVTSTRNLNSRVGPSstklldacvalysefdketfeteknesskitssasspspvvpssndtrssppss 663 
                  9*****************************9999999999988888888888888888888888888888888888888888888888888888888 PP

                  ............................-.TT.TTS.TTH....HHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGG..GTSSSTCEHHHHHHHH CS
                  ............................xxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
         UCH   45 ............................lnesnplgkkge....lakalkdlfkellkskskavsPkklkktlsklaks..fsgykqqDaqEflafl 107 
                                               + s+p++ ++          + l + +  s   a++P++++k+ls++ k   +++++q+Da+Efl++l
  CCD24254.1  664 ssfsssssssssssddtmltapapeissASSSSPTNIEKGlgskTPSTTRLLSATIKPSIVDAIKPDAFYKVLSTIPKFkdLQWGHQEDAEEFLTQL 760 
                  887777777777777777777666655412223333333333323333333333333556679999*********9987779*************** PP

                  HHHHHHHHCC................................................................................HCCCHHH CS
                  xxxxxxxxxx................................................................................xxxxxxx RF
         UCH  108 Ldqlhedlnr................................................................................evaeekw 124 
                  Ldqlhe++ +                                                                                ++++++ 
  CCD24254.1  761 LDQLHEEIISaiecltdneienllqsitdeqlkifiirnlsrynkaefitkispklkelinkygtmtddtndsgdssnewhevsgtskkgKKNKTAV 857 
                  ***************************************************************************************9765556666 PP

                  HHHCCCTTSHHHHHH-EEEEE............................................................EEEEEEB-SEEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxx............................................................xxxxxxxxxxxxxxxx RF
         UCH  125 kkhlkrndslitdlfegqlks............................................................klklkrlPeiLiihlk 161 
                  k++     s+i+++f+gq++s                                                            ++ +++lP++L+i+lk
  CCD24254.1  858 KRTVDVTPSPISNIFGGQFRSvldipfnkesqsitldpfqtiqldisdpmindletafkkfsefellpfksssgkdveakkQTFIDKLPQVLLIQLK 954 
                  ************************************************************************************************* PP

                  SEEETEE................EEE--SEEB--SEEE-G.GGBSS-BTTS-TCS-BEEEEEEEEEES.CTTSEEEEEEEECTTTTEEEEEETTEEE CS
                  xxxxxxx................xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  162 Rfsynss................ksKlntkvefpeeldls.sylaeekkkkteekkkYeLiavvvHsG.slssGHYvayiknekngkWykydDetvk 240 
                  Rfs+ s+                 +K+++k+++ +el +  + +++   k++e+++kY+L avv+H+G s+++GHY+a i n++ +kW+++dD +++
  CCD24254.1  955 RFSFVSNigkdngmtnynsyngrIEKIRKKINYNHELLVPvESVSSAILKNNESSRKYKLRAVVYHHGsSPDGGHYTADIYNKDLKKWFMIDDVNIT 1051
                  ****44444445566666778989999999999996655433333444555667788*********************99999************** PP

                  EE-HHCCCTT.........CEEEEEE CS
                  xxxxxxxxxx.........xxxxxxx RF
         UCH  241 evkeeeevls.........sayiLfY 257 
                  e++++ +v +         +ayiL+Y
  CCD24254.1 1052 ELEDA-DVVNggdngldtrTAYILMY 1076
                  ***98.555568888889*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1080 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3362  (0.187517); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                       163  (0.00909142); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.81u 0.39s 00:00:02.20 Elapsed: 00:00:00.57
# Mc/sec: 5744.80
//
Query:       CCD24255.1  [L=478]
Description: hypothetical protein NDAI_0C05960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.3e-16   57.9   0.0    4.6e-15   55.7   0.0    1.8  1  Aminotran_1_2   Aminotransferase class I and II
     0.0022   16.8   0.0     0.0048   15.7   0.0    1.6  1  Aminotran_MocR  Alanine-glyoxylate amino-transferase


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   5.1e-19   4.6e-15      40     358 ..      51     458 ..       8     462 .. 0.76

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 5.1e-19
                    T-BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTT...T-EEEEEESS-THHHHHHHHTTSEEEEEEBEET....... CS
  Aminotran_1_2  40 ygpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnp...gdeilvpdptyasyknilrlsggevvryplyse....... 125
                    yg   g++ ++++++++ ++ +++++ +   + ++sGa+ +i  +   ++l++    ++ ++ +pty  +++++  +g++    ++++        
     CCD24255.1  51 YGSDSGAYWVRNEITELNKKVYGIDHAKPEYLNLTSGASYGILNILLQTTLPHvgyTKQAFIVTPTYFLINDCFIDAGFAGKMTAIDEMdptseqf 146
                    555556666666666666666666666665666666666666666666653332223456666666666666666666664444434335556666 PP

                    TTTEE-HHHHHHHHTTHHCTTE...............................................TEEEEEEESS-TTT--B--HHHHHHHH CS
  Aminotran_1_2 126 edfhldlealeealkeapegnk...............................................ktkvilvesphNPtGtvatleelekll 174
                    +++ l+++ l++++ e+  g++                                               k  + +v s  NP+G+ ++l++ +kl+
     CCD24255.1 147 DGYDLNINLLLDKIHELE-GSVhgnsnedeieknegtctqqllndskaklprslecirrpnansmkkiyKYVLYCVPSFANPSGKSYSLKTKRKLI 241
                    666666666666666643.3333666666666666666666666666666666666666666666776666666788889**************** PP

                    HHHHHTTEEEEEEETTTTCBSSSSHTHHH...................HGGSTTSTTEEEEEESSSTTSSGGG-EEEEEE.EHHHHHHHHHHHHHH CS
  Aminotran_1_2 175 dlakkynlllfvDeaYagfvfgsldavat...................ranveeepnllivgslsKafGlaGeRvGyilg.naavvsqlrklsrpf 250
                    dla  y +l++ D++Y+ + ++   a+++                   + +   + +++   ++sK   ++G+RvGy    ++++v ql k  +++
     CCD24255.1 242 DLACLYDILIITDDVYEFLNYKVNPATSVipkrfvdieremwrdlpdgCDLEGMYGHVVSNATFSKII-APGLRVGYNETiSSKLVTQLSKGGANV 336
                    **********************8788888999*9999999999999988888888889999*****88.6*******9888**************9 PP

                    TS..SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS...TEEEECCSCSSEEEEEETHH.CHHHHHHHHHHTCTEEEEEGGGGTS CS
  Aminotran_1_2 251 ls..ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLael...glkvlasqsgmflltdlsae.takelskkLleevgvyvtpgtsftv 340
                        +s+l  +++  +      ++ l++ r+++++r+++l++++++    + +   +++g+f+++ l++  +ake+ + L  e+gv++  g+ f+v
     CCD24255.1 337 SGgtPSQLNSMIVGTMLRNGSAMRILQNLRDTYKHRSEVLYESIKQWlpkDTIAPLQEGGYFSWVTLPEGyDAKEVGERLECEYGVILANGSNFEV 432
                    999977776665555555555678********************8779*988888889*******99987899*********************** PP

                    ........TTEEEEECTTS-HHHHHH CS
  Aminotran_1_2 341 ........pgrlRitvAglteeelee 358
                              ++R++++ + + +++ 
     CCD24255.1 433 andernwgARSVRLSISFMEPTDIKI 458
                    ***99999778999998888888776 PP

>> Aminotran_MocR  Alanine-glyoxylate amino-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.4e-07    0.0048     176     221 ..     218     262 ..     206     474 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.4e-07
                     EEE-SSS-TTT-----HHHHHHHHT---SSTT-EEEEE-TTSS-BS CS
  Aminotran_MocR 176 ilavpkysnptGetiseevarrlaalkaaapdfrifaddayavhdl 221
                     ++ vp ++np+G+ +s +  r+l+ l     d  i +dd y   + 
      CCD24255.1 218 LYCVPSFANPSGKSYSLKTKRKLIDLA-CLYDILIITDDVYEFLNY 262
                     579**********************95.578********9986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3409.16
//
Query:       CCD24256.1  [L=264]
Description: hypothetical protein NDAI_0C05970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-87  292.2   4.8    3.5e-87  292.0   4.8    1.0  1  PET122    PET122


Domain annotation for each model (and alignments):
>> PET122  PET122
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.0   4.8   1.9e-91   3.5e-87       2     243 ..       9     261 ..       8     264 .] 0.93

  Alignments for each domain:
  == domain 1  score: 292.0 bits;  conditional E-value: 1.9e-91
      PET122   2 krlltestrrklyldclnrkfdevLkeiRkiplkeldysflqlyLsrsvqwghvasvdyiWskyvlrlkvlvvkPelLCdignlalveekkfipeqiyk 100
                 +r + ++ r++l+l+clnr+fd+vL e+R ip +e+d +flqlyL++s+qwgh++s++yiW+kyv + k l+v P+lLCdign+++  +k+ ip+q+y 
  CCD24256.1   9 RRYINDDARKRLFLNCLNRNFDQVLTEVRGIPRDEMDSNFLQLYLIKSCQWGHMDSIEYIWYKYVTQWKALTVPPKLLCDIGNICISYNKTYIPKQLYA 107
                 78899********************************************************************************************** PP

      PET122 101 yyekfy..esekeaeeedkykyeLlrikvesfakgtgskttFkekWkvfLedldke.....lpkavvfrvrDfPyLtks.vgkedrdllqellfeenkl 191
                 y++ +y  + +k+ +++++ +y Llri+vesfakgt + t+F+ekWkv+Led+d++     + ++  ++vrDfPyLt+s  ++ d++++ ++lf en++
  CCD24256.1 108 YFNAVYgkRDNKSLRSKTEDHYALLRIRVESFAKGTLHTTKFREKWKVYLEDIDNNpyfndVTNNHLIKVRDFPYLTQSmNHSCDEETASNILFGENRI 206
                 ******865566677777889*********************************85444448999**************667789************** PP

      PET122 192 tiknrstltLLLnlvLlq..pelsldfkirlFekflesyksldy.ddslaiLlrk 243
                 +ikn+ +l L Ln++Llq  + +s++fk ++ ++f ++y+s+++ +d+l+iL   
  CCD24256.1 207 AIKNPRSLILFLNMILLQdgTIFSTSFKTSVLKRFQQVYQSMELpNDTLTILKTL 261
                 ******************6556899*****************76589****9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2022.30
//
Query:       CCD24257.1  [L=424]
Description: hypothetical protein NDAI_0C05980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-21   76.1   1.6    2.8e-21   76.1   1.6    2.0  2  60KD_IMP  60Kd inner membrane protein


Domain annotation for each model (and alignments):
>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   1.6   1.6e-25   2.8e-21       2     165 ..     141     329 ..     140     330 .. 0.79
   2 ?   -3.5   4.0      0.46   8.3e+03      32      65 ..     368     403 ..     361     412 .. 0.65

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 1.6e-25
    60KD_IMP   2 glaIilltiivrlillpltlkqlkssakmqelqPelkeiqekyk.....kdkqklqqemmklYkkegvnplaGclplLiqlpifialyrvlrsla.... 91 
                 +  I + ti++rl+++pl++k+  + a+ + ++P+l++i +        ++ q l+ e  kl  ++g+     + p+ +qlp+ i+++++lr++a    
  CCD24257.1 141 WGTICVTTILIRLLMFPLYVKSSDTVARNSHIKPQLDKITKELMsstdiSKSQLLALERKKLLTENGIKTRWLMAPM-LQLPLAIGFFNALRHMAnhpv 238
                 557999***********************************99877654444889*************988766666.6**************997777 PP

    60KD_IMP  92 .sf......wikdLsapd....lpillavttflq.........qklskskkm.qkmmlyvmplmilffslsfpaglvlYwlvsnllsiaqqliin 165
                   f      w+++Ls  d    l +++a++ +           q++s      +k + +++pl+ +  ++++++++vlY+ ++ ++s++q+++++
  CCD24257.1 239 dGFtdqgiaWFQNLSLADpylgLQFITAAVLISFtrlggetgaQQFS----PvMKRFFTILPLVSIPATMKLASAVVLYFAINGTFSVLQTMVLR 329
                 722556667*******9998884444444433221233333322222....13556669********************************9987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.46
    60KD_IMP  32 elqPelkeiqekykkdk.qk.lqqemmklYkkegvn 65 
                  ++ ++++ +++ +k + +k ++++++kl k+++ n
  CCD24257.1 368 SIRENMDNAKKQSEKRQfMKlKEEKLQKLIKEQNKN 403
                 566666666666655545553556667777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2510  (0.139997); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3166.93
//
Query:       CCD24258.1  [L=2202]
Description: hypothetical protein NDAI_0C05990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-37  128.3   0.8    5.2e-37  127.0   0.1    2.2  2  RhoGAP    RhoGAP domain
    4.1e-17   62.3   0.6    4.1e-17   62.3   0.6    4.6  4  RasGEF_N  RasGEF N-terminal motif
    1.2e-10   41.9   0.3    1.8e-07   31.5   0.0    3.9  2  RasGEF    RasGEF domain


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.1       2.4   1.4e+04     109     127 ..     559     577 ..     540     586 .. 0.62
   2 !  127.0   0.1   8.7e-41   5.2e-37       1     148 [.    2017    2174 ..    2017    2178 .. 0.93

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 2.4
                 HHHHHHHHHHHHHHHTHHH CS
      RhoGAP 109 dtLryLlehLkrvaenske 127
                 ++L++++++L +++ +++e
  CCD24258.1 559 KILQTVISLLDTISLHNDE 577
                 4566666666666666665 PP

  == domain 2  score: 127.0 bits;  conditional E-value: 8.7e-41
                  BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCT.....TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHH CS
      RhoGAP    1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavds.....dleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeer 92  
                  P i+ k++e+ie rgld++g+yR++gs  ++++l++afd++ av++     d+++++v+a+a+++K++Lrelp++L+++e +++++++a   + +e 
  CCD24258.1 2017 PTIIVKLLEEIELRGLDEVGLYRIPGSVGSINALKNAFDEEGAVNNsftleDDRWFEVNAIAGCFKMYLRELPDSLFSNEKVHDFTRLAMRYKSSEI 2113
                  89******************************************99****************************************85555444444 PP

                  .....HHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT-TS CS
      RhoGAP   93 .....lealkellekLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrpks 148 
                       ++++  +l+ LP + ++t++ ++ hL++v+++  +n+M+a+nLaivf+ +++ +++
  CCD24258.1 2114 pldqyKHEMTTMLNMLPVCYYQTMKRIVMHLNKVHQHVNNNRMDASNLAIVFSMSFIDQDD 2174
                  4555599************************************************998865 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.63   3.8e+03      62      87 ..     385     426 ..     348     442 .. 0.56
   2 ?   -3.5   0.4       2.1   1.3e+04      32      51 ..     551     587 ..     527     647 .. 0.48
   3 !   62.3   0.6   6.9e-21   4.1e-17       8      98 ..    1182    1305 ..    1177    1312 .. 0.80
   4 ?   -0.7   0.3      0.29   1.7e+03      43      98 ..    1347    1398 ..    1328    1404 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.63
    RasGEF_N  62 s...nswnsksssn............irl.rvlsvlkewven 87 
                 s   n++ns++s+             ++  +  s++k+++e 
  CCD24258.1 385 SetfNDNNSSRSNSlsttrekitpeaTQTdNLASIMKTPIEL 426
                 212322222222224445555555554445777777777765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.1
    RasGEF_N  32 yrsFttpaeLlekLierye.................i 51 
                 + sF    ++l+  i+  +                  
  CCD24258.1 551 FPSFLLDDKILQTVISLLDtislhndeisnklkitlA 587
                 3333333333333333333333222244444444441 PP

  == domain 3  score: 62.3 bits;  conditional E-value: 6.9e-21
    RasGEF_N    8 ekLierLtsk.rlldddfletFLltyrsFttpaeLlekLierye.................inppnnlesdes.......nswnsksssn....... 72  
                   +L+++ + k ++++d f+etF++ty+ Ftt++ +le+L++r++                  n+ +n             + w+ k+ ++       
  CCD24258.1 1182 VGLLDYAFVKlTMDNDIFTETFFNTYKGFTTTTSVLENLAKRFIgatscassiskimntdgANEADN-----TieqnatfPAWDLKVDDQsdinpih 1273
                  579****************************************999888888777654443222222.....1333446777777777669999999 PP

    RasGEF_N   73 ...irlrvlsvlkewvenhyydfsddka...l 98  
                     i+++  ++l ++++nhy df+d+     +
  CCD24258.1 1274 ilkIQIGAAEALFHLIKNHYVDFTDSLSnnvT 1305
                  999**********************9875444 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.29
    RasGEF_N   43 ekLieryeinppnnlesdesnswnsksssnirlrvlsvlkewvenhyydfsddkal 98  
                  + L e+++   + + ++++ ++ +    ++++ +++++l +  ++  +df+++ + 
  CCD24258.1 1347 TTLNETFN---NIKASYQK-QLYKPIGVNKLQRKTIEILEKFQNKTLSDFERNLNN 1398
                  44444442...11111111.122222334478899999999999999999998754 PP

>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0     3e-11   1.8e-07      57     112 ..     717     772 ..     644     854 .. 0.83
   2 !    5.7   0.1    0.0025        15     121     177 .]    1637    1696 ..    1594    1696 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 3e-11
      RasGEF  57 eeslkkRakviekfikiakecrklnNfnslmailsaLqsspvsrLkktweavskks 112
                 +e++k  ak+++k+++++++ ++l+++ s++a+++ ++s pv rL  +we vs+  
  CCD24258.1 717 KEDPKLGAKILTKWVQLGCRFEHLGDMVSWLAVATIICSIPVLRLMSAWEYVSEPI 772
                 4789999**********************************************543 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0025
      RasGEF  121 elmspe..nnfknyrealkssasskpciPflglyltdltfieegnpdtl..egk.iNfeKrr 177 
                   +++p   ++f +y + + s+  +k+  P+ g ++++l+ i++  p++   + k iNf+Krr
  CCD24258.1 1637 DIIDPVhiKSFNEYDNVYTSK--CKNLTPCPGWFISRLLEISQFVPNMSinNSKlINFDKRR 1696
                  444443337888999999888..89999**********99998766666777778*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1370  (0.0764125); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.29u 0.28s 00:00:01.57 Elapsed: 00:00:00.49
# Mc/sec: 13571.79
//
Query:       CCD24259.1  [L=331]
Description: hypothetical protein NDAI_0C06000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.4e-127  425.7   0.0   1.6e-127  425.5   0.0    1.0  1  UPF0160      Uncharacterised protein family (UPF0160)
     0.0073   16.6   0.0      0.031   14.6   0.0    2.0  2  Gallidermin  Gallidermin


Domain annotation for each model (and alignments):
>> UPF0160  Uncharacterised protein family (UPF0160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.5   0.0  1.8e-131  1.6e-127       1     317 []      14     331 .]      14     331 .] 0.98

  Alignments for each domain:
  == domain 1  score: 425.5 bits;  conditional E-value: 1.8e-131
     UPF0160   1 kigTHngkFhaDevlAvalLrllpeykdaelvRtrdpevleecdivvDVggvyDpakkryDHHqrefnetfsekaktklSSaGLvYkhfgkeiikkllk 99 
                 +i+TH+g+FhaD++lAv+lLrllpeykda+++R+r+pe+++++divvDVg++yD+ k  +DHHqr+f+etfs+k+ktklSSaGLv+khfgk+ii+ l++
  CCD24259.1  14 QICTHSGSFHADDALAVYLLRLLPEYKDAKVIRSRNPEDWDASDIVVDVGAKYDSVK-FFDHHQRGFDETFSDKYKTKLSSAGLVFKHFGKRIIELLVT 111
                 59*****************************************************88.*************************************9977 PP

     UPF0160 100 le..ldeeevellyeklyeefveaiDaiDnGisvyee.vekkykikt.slssrvgrlnpewneeekeedederFekAselvgeeflekvkylakswlpa 194
                  +  l+ e+v+lly ++ye+fvea+Da DnGis+y++  e+++k+k+ +++ +v+ lnp+wn++ + +  de+F kAse+vg++f++ vk + +swlpa
  CCD24259.1 112 KNitLTPENVDLLYIRVYERFVEALDADDNGISQYDTdLEPRFKNKSiTIPGIVAGLNPNWNDDCSPAIFDENFLKASEFVGSTFVNLVKGYGESWLPA 210
                 668899******************************99************************************************************* PP

     UPF0160 195 reivkealekrkevdesgrilvleesvpwkehllelekelkiekkvlyvlyedeeekwrvqavpvskesfesrkpLpeeWrGlrdeeLsevsgiegavF 293
                 +++vkea++k+    +++ri+vl++++pwkehl+++ekel++e+k+++v+++d++++wrv++vpvs++sf+ rk Lpe+ rGlrdeeLse sg+++++F
  CCD24259.1 211 KSLVKEAIAKN--ETNDKRIIVLDQFCPWKEHLYDIEKELNLENKIQFVIFKDSSNSWRVSTVPVSSTSFQFRKGLPEHLRGLRDEELSEKSGVPDCIF 307
                 **********5..56789********************************************************************************* PP

     UPF0160 294 vHasgFiggnktkegalemAkkaL 317
                 +H++gFigg+ktke+al++Ak++L
  CCD24259.1 308 IHSAGFIGGAKTKESALKLAKMSL 331
                 *********************987 PP

>> Gallidermin  Gallidermin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.55     5e+03      41      47 ..      16      22 ..       5      24 .. 0.72
   2 !   14.6   0.0   3.4e-06     0.031      12      40 ..     135     163 ..     130     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.55
                 XXXXXXX CS
  Gallidermin 41 CAktGSF 47
                 C + GSF
   CCD24259.1 16 CTHSGSF 22
                 7788888 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.4e-06
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Gallidermin  12 alDvkvnakesndsgaepRiaSkflCtPG 40 
                  alD  +n +   d + epR++ k++  PG
   CCD24259.1 135 ALDADDNGISQYDTDLEPRFKNKSITIPG 163
                  79**************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2540.79
//
Query:       CCD24260.1  [L=1014]
Description: hypothetical protein NDAI_0C06010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-41  139.6  10.8    6.8e-41  139.6  10.8    3.1  4  Sec34     Sec34-like family


Domain annotation for each model (and alignments):
>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6  10.8   3.8e-45   6.8e-41       1     147 [.      89     236 ..      89     238 .. 0.98
   2 ?   -2.2   0.2      0.19   3.4e+03      55     107 ..     395     446 ..     381     460 .. 0.69
   3 ?   -2.6   0.2      0.24   4.4e+03      53      81 ..     716     742 ..     669     771 .. 0.47
   4 ?   -2.8   0.3      0.28   5.1e+03      15      49 ..     868     902 ..     865     912 .. 0.68

  Alignments for each domain:
  == domain 1  score: 139.6 bits;  conditional E-value: 3.8e-45
       Sec34   1 yldqLeskeeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkrleelaeeieekLkyFeeldpitrkLnspgss.lvksesFlemL 98 
                 yl qL+++ ++ +++l++++++ +q+e++ e+ ++++e+t+++ +++++l+e+   ++e++e+i++kLkyF+ l+pi+r+Ln++ s  +vk++sF+ mL
  CCD24260.1  89 YLAQLQNNVDQHNQILNHAKKIDSQFEDVFENLNHIAENTNQFVKDTKELHEKYIIFHEISESIPNKLKYFDILNPIMRRLNHAISPnIVKKDSFKIML 187
                 899************************************************************************************************ PP

       Sec34  99 kklDeclefleehpefkeaetYlirfkqcltrAltliknyvvnslkelt 147
                 +k+De+l+fle++p+fke+etY+i+fkq l+r+++li +++ n+lke  
  CCD24260.1 188 QKIDESLKFLESNPNFKESETYRIKFKQSLIRSCELIATFLKNILKEQL 236
                 **********************************************975 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.19
       Sec34  55 krleelaeeieekLkyFeeldpitrkLnspgsslvksesFlemLkklDeclef 107
                 +++ +l+++++   +y+ e+++ +  +n +  ++  ++ F ++++kl + l f
  CCD24260.1 395 TNIIKLCDSLTLFTHYY-EFEENSAGFNDQIGNVYFNKIFDPIVQKLQSRLIF 446
                 55566666665555555.56777777887777777778888888888776666 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.24
       Sec34  53 eqkrleelaeeieekLkyFeeldpitrkL 81 
                 + + +++l e+ie+   + e+++   +++
  CCD24260.1 716 DLEVVQNLIEAIEQA--IIEKYEAFYEEI 742
                 333333333333332..223333333333 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 0.28
       Sec34  15 lleqtdealeqLeeleekfksvsektsslheaceq 49 
                 +l++t++++e +++l+ + k+ +++ +s + + +q
  CCD24260.1 868 ILNSTNSTHEIIDDLTGNLKDKESNFESQQMDDQQ 902
                 67778888888888887777777776665555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1014 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1639  (0.0914161); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 6846.84
//
Query:       CCD24261.1  [L=733]
Description: hypothetical protein NDAI_0C06020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (733 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1371  (0.0764683); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 5127.67
//
Query:       CCD24262.1  [L=573]
Description: hypothetical protein NDAI_0C06030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4155.31
//
Query:       CCD24263.1  [L=157]
Description: hypothetical protein NDAI_0C06040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-12   47.2   0.0    3.8e-12   46.3   0.0    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
  ------ inclusion threshold ------
      0.032   13.5   0.2      0.041   13.2   0.2    1.1  1  DUF1978        Domain of unknown function (DUF1978)


Domain annotation for each model (and alignments):
>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   4.2e-16   3.8e-12       2      63 ..      43     104 ..      42     106 .. 0.94

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 4.2e-16
                    XXXHHHHHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehikl 63 
                     +P a vkkIm+ d+d++k++++ ++l  +++e+fi  l +++ +i+ +++ K i+ + +k+
     CCD24263.1  43 HFPPAKVKKIMQTDEDIGKVSQATPVLTGRALEFFIALLVKKSGDIARESGTKRITSDVLKQ 104
                    69****************************************************99887766 PP

>> DUF1978  Domain of unknown function (DUF1978)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   4.6e-06     0.041     168     228 ..       2      62 ..       1      71 [. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.6e-06
     DUF1978 168 rdQedywKeeekkelersaElrekgtkvkseEleeqlesleellk.esseeLevlekhilkv 228
                 ++Qe+y K  e+ +++ saE ++++ k    El+e ++ +   +     +++++ + +i kv
  CCD24263.1   2 ENQEQYSKIGEQNDIAISAEQQQEERKPD-PELKEVFDRIKTHFPpAKVKKIMQTDEDIGKV 62 
                 89******************999888777.78887777776555414456677777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      558  (0.0311228); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1327.42
//
Query:       CCD24264.1  [L=288]
Description: hypothetical protein NDAI_0C06050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.015   15.8  10.6      0.015   15.8  10.6    2.3  3  SPT2        SPT2 chromatin protein
      0.016   15.6  11.6      0.016   15.6  11.6    2.8  2  PBP1_TM     Transmembrane domain of transglycosylase PBP1 at 
        3.8    7.4  20.1        1.2    9.0   3.5    2.8  3  DASH_Spc19  Spc19


Domain annotation for each model (and alignments):
>> SPT2  SPT2 chromatin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   1.9         2   1.2e+04      92     108 ..      56      72 ..      46      77 .. 0.63
   2 ?   -3.1   0.9       1.8   1.1e+04      18      25 ..      83      90 ..      67     100 .. 0.43
   3 ?   15.8  10.6   2.5e-06     0.015       6      40 ..     245     279 ..     239     285 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2
        SPT2  92 DeeEeerekreeeekkk 108
                 + + +er+k+ e ekkk
  CCD24264.1  56 ELRRQERLKNGELEKKK 72 
                 34445555555555554 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.8
        SPT2 18 edsdlddf 25
                + s++ + 
  CCD24264.1 83 SGSKSTRK 90
                22222222 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 2.5e-06
        SPT2   6 ksqkkrrseeeeedsdlddfieddeeeeeerrrya 40 
                 k +++r ++e+++d+d+ddfieddeeeeee++r++
  CCD24264.1 245 KYSNRRGRYEDQYDDDMDDFIEDDEEEEEENYRSK 279
                 556778899*****************999987633 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   2.7      0.68     4e+03      24      34 ..      86      95 ..      44     116 .. 0.61
   2 ?   15.6  11.6   2.6e-06     0.016      18      63 ..     240     285 ..     229     287 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.68
     PBP1_TM 24 kasrrrrrddd 34
                k s r+r +dd
  CCD24264.1 86 K-STRKRDNDD 95
                1.111222333 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 2.6e-06
     PBP1_TM  18 akparkkasrrrrrdddyddeyddeedDdddddeeeevprkgkkkk 63 
                 ++ + k ++rr r++d+ydd++dd  +Dd++++ee++ ++  ++++
  CCD24264.1 240 RTLESKYSNRRGRYEDQYDDDMDDFIEDDEEEEEENYRSKSRRDER 285
                 33344555666677**************998888888877766555 PP

>> DASH_Spc19  Spc19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.5    0.0002       1.2      75     148 ..      46     126 ..      23     132 .. 0.79
   2 ?   -1.3   0.2       0.3   1.8e+03     107     140 ..     184     217 ..     172     233 .. 0.45
   3 ?    7.7   3.8    0.0005         3      77     124 ..     233     280 ..     228     286 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0002
                 HHHHHHHHHHHHHHHHHHHHHHHHH......HHHHT-XXXXXXXXXXXX....XXXX.......XXXXXXXXXXXXXXXXX CS
  DASH_Spc19  75 eleklerreetLkaklelqegrlsnaesskkeeeeseeskeeeeeeenkeeekskkk.......ltkeelerlkkLkqkKe 148
                   +   rr ++L+ + +l++g l++++ + +++ +s++ +++ ++++n++ e+s  +       +++++l  ++ L +k e
  CCD24264.1  46 DDDPAVRRLKELRRQERLKNGELEKKKPKPRRSPGSSSGSKSTRKRDNDDVEGSLGTvykkkvgSSNAKLVPVRSLTKKLE 126
                 5556679*******************9999999999999999999999888887777888888877888877777777655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.3
                 HHHT-XXXXXXXXXXXX....XXXXXXXXXXXXX CS
  DASH_Spc19 107 eeeseeskeeeeeeenkeeekskkkltkeelerl 140
                 +++s+++ +++++ e ++++ + ++l+++ + +l
  CCD24264.1 184 ASKSTSTVNNKSKPEFSRNHPNGRHLKEQSAVKL 217
                 2222222222222222222222222444444444 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0005
                 HHHHHHHHHHHHHHHHHHHHHHH......HHHHT-XXXXXXXXXXXX. CS
  DASH_Spc19  77 eklerreetLkaklelqegrlsnaesskkeeeeseeskeeeeeeenke 124
                 +kle++++tL++k+  ++gr++++ +++ ++  +++++eeee+ ++k 
  CCD24264.1 233 QKLESKRRTLESKYSNRRGRYEDQYDDDMDDFIEDDEEEEEENYRSKS 280
                 69********************97555555544444444444333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1188  (0.0662614); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2277.41
//
Query:       CCD24265.1  [L=816]
Description: hypothetical protein NDAI_0C06060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-34  117.8   4.7    8.1e-34  116.4   4.7    1.8  1  Rad4            Rad4 transglutaminase-like domain
    1.7e-26   92.4   0.2    3.6e-26   91.4   0.2    1.6  1  BHD_3           Rad4 beta-hairpin domain 3
    2.5e-16   59.2   0.1    6.9e-16   57.8   0.1    1.8  1  BHD_1           Rad4 beta-hairpin domain 1
    0.00011   23.0   0.0    0.00011   23.0   0.0    3.8  4  BHD_2           Rad4 beta-hairpin domain 2
     0.0012   19.2   0.6     0.0055   17.1   0.0    2.3  3  Transglut_core  Transglutaminase-like superfamily


Domain annotation for each model (and alignments):
>> Rad4  Rad4 transglutaminase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   4.7   2.2e-37   8.1e-34       3     146 ..     305     443 ..     303     444 .. 0.92

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 2.2e-37
                 E----TT--BSS---......--TTHHHHHTTS-SEEEEEEETTTTEEEEEESSSS-EE...SS--TTS--..TGGGS----EEEEE-TTS-EEE-HHH CS
        Rad4   3 lkkpslsslksdkskkketkkkkkrlkdkdlpypvyWvEvfspekkkwisvdplvgsti...ekkeilepl..aekakqvlsYVvAfdsdgsakDVTrR 96 
                 +++p++++lk +++        ++ ++++ +++p +W+Ev+++ +kkwi++d+++ +ti   +  ++lep   a+++++ ++YV+++d++++++D+TrR
  CCD24265.1 305 CQPPDFTDLKVENKI-------TEVSYEDMTKFPLFWCEVWDKFAKKWITIDVMNFKTIeqiKIRSKLEPQgvACCKRNNMRYVIGYDRKHGCRDITRR 396
                 566666666666666.......8999*********************************888778899999*999999********************* PP

                 H-T.TCCCCHGGGSGGGSHHHHHHHHHHHHHH--S---H..HHHHHHHHH CS
        Rad4  97 YlsdysnsktkklrvekskeekkWfesvlrplekrnkertevdalEdael 146
                 Y++ ++n k++k+rv+k++e++kW+ +vl ++++r++++  +d++Eda++
  CCD24265.1 397 YTR-WYNCKIRKKRVTKDEEGSKWYSEVLNTMHRRKRTK--IDDYEDAYF 443
                 **7.9**********************************..******986 PP

>> BHD_3  Rad4 beta-hairpin domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.2   9.9e-30   3.6e-26       1      75 [.     570     643 ..     570     644 .. 0.94

  Alignments for each domain:
  == domain 1  score: 91.4 bits;  conditional E-value: 9.9e-30
                 ----TTS-EE-SSGGGS-TTEEEEE-TTHHHHHHHCT---EEEEEEEEE-.SS-EE..EEEEEEEEEGGGHHHHHH CS
       BHD_3   1 vPkNeygnieifkpsmlPegavhislkgaakaakklgidyapAvvGFefk.grrgkgiPvidGivVaeedeeavle 75 
                 + kN +gnie+f+p+m+P+++++i++++a kaak+l+i+ya+Av+GF+f+ gr++k  P+i+GivVa++++eav++
  CCD24265.1 570 ITKNTFGNIEVFVPTMIPQNCCLIENPNAIKAAKFLRINYARAVTGFKFErGRSSK--PNISGIVVAKWFAEAVVA 643
                 689***********************************************666666..***************985 PP

>> BHD_1  Rad4 beta-hairpin domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.1   1.9e-19   6.9e-16       1      51 []     449     505 ..     449     505 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.9e-19
       BHD_1   1 kepmPenlqdfKnhplYvLerhLkrnEvlhpdakpvgvfkk......kepVYrRsdV 51 
                 +e+mP+nlqd+Knhp+Y+Le++L++n+v+++++k++g++k         +VY R+++
  CCD24265.1 449 SEGMPDNLQDLKNHPYYILEKDLRQNQVIRSGCKESGYLKLhgrvgkVLKVYERKNI 505
                 59*************************************436667779******986 PP

>> BHD_2  Rad4 beta-hairpin domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.046   1.6e+02      16      40 ..      26      58 ..      17     116 .. 0.74
   2 ?   -0.1   0.2      0.53   1.9e+03      11      44 ..     408     447 ..     397     456 .. 0.57
   3 !   23.0   0.0   3.1e-08   0.00011       1      64 []     509     562 ..     509     562 .. 0.88
   4 ?   -4.0   0.1         5   1.8e+04      38      47 ..     700     709 ..     684     713 .. 0.52

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.046
       BHD_2 16 gelPvKrvksraktarkkredekk........e 40
                 e P+Kr k+r ++ ++k +  k         e
  CCD24265.1 26 TERPLKRRKRRSSRLQRKGSVPKTddevinisE 58
                688*******99999999776665445555551 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.53
       BHD_2  11 ReVkpgelPvKrvks......raktarkkredekkeeeee 44 
                 + V ++e+  K+         r+k++++ +++++  ee +
  CCD24265.1 408 KRVTKDEEGSKWYSEvlntmhRRKRTKIDDYEDAYFEERN 447
                 5677777777777776655555555555555555444444 PP

  == domain 3  score: 23.0 bits;  conditional E-value: 3.1e-08
       BHD_2   1 rSaerWyrlGReVkpgelPvKrvksraktarkkredekkeeeeeeeegevpLYgewQTelYvpP 64 
                 +S ++Wy++GR+ k +   +K+vk++ ++            +++ ++g+  LY    TelY+pP
  CCD24265.1 509 KSGKQWYMEGRILKTNCKSLKTVKKKTMRG----------PSDDINDGDERLYPVTDTELYIPP 562
                 7999*********************99876..........44556678889***********99 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 5
       BHD_2  38 kkeeeeeeee 47 
                  +e+ ++++e
  CCD24265.1 700 GEEDADDQDE 709
                 2233333333 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-06    0.0055      49     111 ..     276     349 ..     248     350 .. 0.78
   2 ?   -2.0   0.1       1.4   4.9e+03      72      84 ..     378     390 ..     375     422 .. 0.59
   3 ?   -2.2   0.0       1.6   5.8e+03      72      93 ..     610     637 ..     599     650 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.5e-06
  Transglut_core  49 tgkGncedfaslfvallRalGipaRvvtgylsgeeekeq......svaseda....Hawvevyl.egygWvplD 111
                     +g+G+    a+ fva+lRa+ + aR+v   ++ + ++ +      +v+ ed+      w ev+    ++W+ +D
      CCD24265.1 276 KGHGDRDLAAQGFVAMLRACNVNARLVLSCQPPDFTDLKvenkitEVSYEDMtkfpLFWCEVWDkFAKKWITID 349
                     67899999999*********************88777667777663333333666699*****94456699988 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
  Transglut_core  72 aRvvtgylsgeee 84 
                      R+v+gy +++  
      CCD24265.1 378 MRYVIGYDRKHGC 390
                     5999999997643 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.6
  Transglut_core  72 aRvvtgylsgeeekeq......svased 93 
                     aR vtg+  ++ + ++       va++ 
      CCD24265.1 610 ARAVTGFKFERGRSSKpnisgiVVAKWF 637
                     9999999997665555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       983  (0.0548274); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.23s 00:00:00.93 Elapsed: 00:00:00.40
# Mc/sec: 6070.00
//
Query:       CCD24266.1  [L=240]
Description: hypothetical protein NDAI_0C06070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-62  208.2   0.0    1.2e-61  207.9   0.0    1.1  1  ChaC       ChaC-like protein
  ------ inclusion threshold ------
      0.068   12.0   0.0       0.11   11.4   0.0    1.2  1  HECT_2     HECT-like Ubiquitin-conjugating enzyme (E2)-bindin
       0.12   10.8   0.0       0.14   10.6   0.0    1.1  1  Gag_spuma  Spumavirus gag protein


Domain annotation for each model (and alignments):
>> ChaC  ChaC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.9   0.0     2e-65   1.2e-61       1     178 [.      14     236 ..      14     237 .. 0.97

  Alignments for each domain:
  == domain 1  score: 207.9 bits;  conditional E-value: 2e-65
                 EEEEESSHHHHS--TT-SEEEEEEEETEEEEEEEEESSSSS-SSS-EEEEEEEEHHH..........................-EEEEEEEEE-GGGGG CS
        ChaC   1 lwvfgYGSLiwkpdfeytesrravihgyaRrfwlsstdhRGteekPGrvltLiedee..........................gstiGvvyripaeeae 73 
                 +w++gYGSLi+kp+ +yt++++ +ihgy Rrfw+ss+dhRGt+ekPGrv+tLi++ee                           +t Gvvy+ip+e+a+
  CCD24266.1  14 IWILGYGSLIYKPPPHYTQRIPVTIHGYMRRFWQSSIDHRGTPEKPGRVVTLIPYEEilsipefledlqlyshdfesikcphdLTTFGVVYYIPPEHAN 112
                 7******************************************************99*************************99*************** PP

                 GGGGGGGGSTT..TTEEEEEEEEEE.................-EETTTS-EEEEEEEEEE-TTSTTB--S--HHHHHHHHHH-EETTEEHHHHHHHHHH CS
        ChaC  74 evleyLeeRElvtnGytlkevevyl.................kkdakeekvvlealvyvatikneqyagdedleeiAkviaaaaGpsGsnaeYlfelak 155
                 ev+eyL+ RE+  nGytl+evev+l                 + +++++k+vl+++vy++t++ne+++g+e++e++Akvia+++GpsG+n+eYl  l +
  CCD24266.1 113 EVKEYLDIREQ--NGYTLHEVEVHLntndehelllkdslellPVHERTGKRVLKTSVYIGTVSNEAFVGPEKIEDTAKVIATSHGPSGPNVEYLKLLHQ 209
                 **********9..*****************************99999**************************************************** PP

                 HHHTS--....---BHHHHHHHHHHHH CS
        ChaC 156 aleklgi....girDehLeeleelvkk 178
                 ++e++       + D +L +l+++v k
  CCD24266.1 210 SIEEMLWdehdAVPDLYLLKLLHHVDK 236
                 *****8866534778899999999976 PP

>> HECT_2  HECT-like Ubiquitin-conjugating enzyme (E2)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.8e-05      0.11     318     370 ..     103     158 ..      99     162 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.8e-05
      HECT_2 318 vlYkdeieeedaeklld...esdssveelelpeeiieellevLeesnellPesaRk 370
                 v+Y + ++ +++++ ld   ++  +++e+e+++++ +e +  L++s ellP  +R+
  CCD24266.1 103 VYYIPPEHANEVKEYLDireQNGYTLHEVEVHLNTNDEHELLLKDSLELLPVHERT 158
                 78999999999999999999999*****************************9997 PP

>> Gag_spuma  Spumavirus gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.3e-05      0.14      81     175 ..      77     171 ..      62     205 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.3e-05
   Gag_spuma  81 plaelqlafqdldlpegplrfgplanghyvegdpysrsyrpvtmaetaqmtrdeledtlntqseieiqminllelyevetralrrqlaerssigq 175
                  l +lql  +d++  + p  +  +   +y+  +        + + e    t  e+e  lnt+ e e+ + + lel  v  r+ +r l     ig 
  CCD24266.1  77 FLEDLQLYSHDFESIKCPHDLTTFGVVYYIPPEHANEVKEYLDIREQNGYTLHEVEVHLNTNDEHELLLKDSLELLPVHERTGKRVLKTSVYIGT 171
                 478899999999999999999999999999999998888899999****************************************9977666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1809.65
//
Query:       CCD24267.1  [L=444]
Description: hypothetical protein NDAI_0C06080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-19   68.7   3.7    5.1e-19   67.5   3.7    1.7  1  Copper-fist  Copper fist DNA binding domain


Domain annotation for each model (and alignments):
>> Copper-fist  Copper fist DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.5   3.7   2.9e-23   5.1e-19       1      39 []       2      40 ..       2      40 .. 0.95

  Alignments for each domain:
  == domain 1  score: 67.5 bits;  conditional E-value: 2.9e-23
                 EEETTEEEEETTTTTTSGGGG----SS-EEEE-S----. CS
  Copper-fist  1 ilidgeKyACesCirGHRsstCkHsdrplveirkkGRPv 39
                 i++  eKyAC sCirGHRsstCkH++r+lv++r++GRP+
   CCD24267.1  2 IIYAHEKYACASCIRGHRSSTCKHTERMLVKVRTRGRPS 40
                 67889*********************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3663.60
//
Query:       CCD24268.1  [L=1483]
Description: hypothetical protein NDAI_0C06090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-63  214.8   0.1    2.4e-63  214.0   0.1    1.4  1  SNF2_N           SNF2 family N-terminal domain
    4.7e-38  130.2   2.7    4.7e-38  130.2   2.7    3.9  3  Cdh1_DBD_1       Chromodomain helicase DNA-binding domain 1
    9.5e-28   96.5   2.6    9.5e-28   96.5   2.6    3.1  3  DUF4208          Domain of unknown function (DUF4208)
    4.2e-25   87.4   2.9    5.6e-15   55.0   0.1    3.1  2  Chromo           Chromo (CHRromatin Organisation MOdifier) do
    4.9e-20   71.9   0.1      2e-19   69.9   0.0    2.2  2  Helicase_C       Helicase conserved C-terminal domain
    6.5e-09   36.0   0.4    1.6e-07   31.5   0.0    3.1  2  ResIII           Type III restriction enzyme, res subunit
     0.0025   17.9   0.0      0.011   16.0   0.0    2.1  1  Myb_DNA-binding  Myb-like DNA-binding domain
     0.0052   16.8   0.0     0.0052   16.8   0.0    3.6  3  SLIDE            SLIDE
     0.0053   17.0   0.0      0.024   14.9   0.0    2.3  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
       0.02   15.0   0.0       0.02   15.0   0.0    2.7  4  CHDCT2           CHDCT2 (NUC038) domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.0   0.1   1.4e-66   2.4e-63      48     349 ..     407     684 ..     352     685 .. 0.90

  Alignments for each domain:
  == domain 1  score: 214.0 bits;  conditional E-value: 1.4e-66
                 .HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH......------ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxx RF
      SNF2_N  48 saeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk......mkkknt 140
                  a++ +++ +GiLaDemGLGKTvq++a+i  + +           ++  gp+L+vvP s++  W++++e+++++ +  +++++++++      +   n 
  CCD24268.1 407 MAFLWSKNDNGILADEMGLGKTVQTVAFISWLIY----------ARKQNGPHLVVVPLSTMPAWQETFEKWAPELNCICYMGNQRSRdtirefEFYTNP 495
                 677889999*********************4444..........233469*************************987777776666999999666667 PP

                 -----------EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 141 kvapklladydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekq 239
                 + + k   +++v++ttY+++ +++      s+l +++w+++ +DE+h+lkn +s+++e +++++ +nr+++tGTP+qn+ ++l +L++fL+++ f+   
  CCD24268.1 496 QAKGKKNVKFNVLMTTYEYILKDC------SELGSIKWQFLAVDEAHRLKNAESSLYESLNSFKVNNRLLITGTPLQNNIKELAALVNFLMPGRFT--- 585
                 78999999****************......9****************************************************************9... PP

                 HHHHHTHHHHH.HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HH.H-HHHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
      SNF2_N 240 tfdkllqrpie.aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksssksk.ekilel 336
                   d+ ++ + + +q+e+ ++ L++ lq ++lrr kkdvek+lP kte+i++++ls+v+  +Y+             +l+++ aal+++ k     +l++
  CCD24268.1 586 -IDQEIDFENQdEQQEEYIRHLHSRLQAFILRRLKKDVEKSLPSKTERILRVELSDVQTGYYK------------NILTKNYAALTAGAKGGhFSLLNI 671
                 .5555555555567899**********************************************............78888888999888888788**** PP

                 HHHHHHHHH---X CS
                 xxxxxxxxxxxxx RF
      SNF2_N 337 llelrqacnhpql 349
                 + el++a nhp+l
  CCD24268.1 672 MSELKKASNHPYL 684
                 ***********98 PP

>> Cdh1_DBD_1  Chromodomain helicase DNA-binding domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   2.3       1.7   3.1e+03      43      81 ..     972     999 ..     949    1026 .. 0.37
   2 !  130.2   2.7   2.6e-41   4.7e-38       1     120 []    1030    1149 ..    1030    1149 .. 0.99
   3 ?   -2.5   1.0       3.3     6e+03      35      85 ..    1336    1388 ..    1299    1409 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.7
  Cdh1_DBD_1  43 lyeelleeakklvkeeeekrakeleeleadaeeykeklk 81 
                   ee ++e             ++++  +++ ++ k+++ 
  CCD24268.1 972 KDEEYIKEQ-----------LEMMNRRDTALQKIKNTIS 999
                 111111111...........1122222222333333333 PP

  == domain 2  score: 130.2 bits;  conditional E-value: 2.6e-41
  Cdh1_DBD_1    1 ltEreiRalYkaiLkyGdlsnkleeliadGtLPeknielleelyeelleeakklvkeeeekrakeleeleadaeeykeklkkgevkadeekkdtpit 97  
                  ++E+e+R lYk +L++Gdl+n +eeliadG+LP k+ie++ e+y+ ++++ak+++  e+ekr+++++ele++a+ y++ lk+g+ k+++++kd+p +
  CCD24268.1 1030 IGESELRMLYKNVLRHGDLTNLFEELIADGSLPVKSIEKYGEVYSKMMQTAKEVFLAEDEKRKQIMNELENEAKLYRADLKSGKIKIEDQSKDNPNA 1126
                  68*********************************************************************************************** PP

  Cdh1_DBD_1   98 klaakrrekkAiLFeykgvknlN 120 
                  +la+kr+ekk i+F + gv +lN
  CCD24268.1 1127 RLATKRKEKKTIVFSFGGVNSLN 1149
                  **********************9 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.3
  Cdh1_DBD_1   35 knielleelyeellee...akklvkeeeekrakeleeleadaeeykeklkkgev 85  
                  kn+++++++ +++  +   ++k++ ++e  r+ +l++   + +++ke + + e+
  CCD24268.1 1336 KNVDKVKRIPKDISSSptlSNKSISTSE-SRTSSLKNSTVNQTHEKEYESMDED 1388
                  5555555555555432222455555544.3455555555555555555554444 PP

>> DUF4208  Domain of unknown function (DUF4208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       2.7   4.9e+03      21      40 ..     614     633 ..     593     640 .. 0.66
   2 ?   -1.6   0.4       2.1   3.8e+03      21      40 ..     960     984 ..     958    1016 .. 0.51
   3 !   96.5   2.6   5.3e-31   9.5e-28       1      96 []    1380    1473 ..    1380    1473 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.7
     DUF4208  21 sLkrLkkltkekllskkera 40 
                  L+rLkk+ +++l+sk+er+
  CCD24268.1 614 ILRRLKKDVEKSLPSKTERI 633
                 38899999999889998886 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.1
     DUF4208  21 sLkrLkkltkekl.l....skkera 40 
                 +Lk+Lk+ ++++       ++ e +
  CCD24268.1 960 ELKKLKDEEQKRKdEeyikEQLEMM 984
                 5667766544422111111333333 PP

  == domain 3  score: 96.5 bits;  conditional E-value: 5.3e-31
     DUF4208    1 eedesmdeeeckellrpvkksLkrLkkltkekllskkerakilkkeLlkiGdfIdellkekkeekkeklkkhlWefvskfwpkkvsgkkLeemYkk 96  
                  +e+esmde+ec++ +  v+ sLkrL+++ k+  l++ke+a+ilk+eL +iGd+I+++   +k+++++k++khlW++ ++fwp +v+++kL++mY+k
  CCD24268.1 1380 KEYESMDEDECRHAMASVRVSLKRLRRGGKG--LDRKEWARILKTELKNIGDHIESQKGMSKKTESSKFRKHLWSYSTNFWPVEVKSTKLMAMYDK 1473
                  589**************************99..*************************************************************97 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.3   6.8e-11   1.2e-07       3      41 ..     199     252 ..     197     265 .. 0.91
   2 !   55.0   0.1   3.1e-18   5.6e-15       2      54 .]     304     359 ..     303     359 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 6.8e-11
                 EEEEEEEEEETTEEC...............EEEEEEETTSTGGGTEEEEGGGCS CS
      Chromo   3 VerIidhrtdkdgle...............leYlVKWkglpysentWEpeenle 41 
                 ++ +i+hr ++d  e               +++l+KW + ++ +ntWE+ e l+
  CCD24268.1 199 IDMVISHRLKDDSDEsikkivpdlnqckqnYQFLIKWTDQSHLHNTWETYESLS 252
                 789*****99999999*********************************99987 PP

  == domain 2  score: 55.0 bits;  conditional E-value: 3.1e-18
                 EEEEEEEEE...EETTEECEEEEEEETTSTGGGTEEEEGGGCSSHSHHHHHHHHHH CS
      Chromo   2 eVerIidhr...tdkdgleleYlVKWkglpysentWEpeenlekcfqelideFkkr 54 
                 ++erIid++    d+++ +l+YlVKWk+l+y+e+tWE+++++ k ++e++++F++r
  CCD24268.1 304 IPERIIDSQrisLDDGTSQLQYLVKWKRLNYDEATWESATDIVKLSPEQVKHFQNR 359
                 78******99866666666**********************************987 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   1.1e-22     2e-19       4     111 .]     718     829 ..     715     829 .. 0.90
   2 ?   -3.5   0.0       7.2   1.3e+04      12      25 ..    1130    1143 ..    1126    1176 .. 0.64

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 1.1e-22
                 HHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH..TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C   4 eallell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn..kgesd.vLiatdvaerGidipkvnlVinfdlprnv 97 
                   l +ll  l+++g+++lif++ +++l+   ++l + kgi++ +l+g+ p+ +r+ +++ fn  + + d +L++t++++ Gi++  +++Vi+fd ++n+
  CCD24268.1 718 VLLDQLLtRLKKDGHRVLIFSQMVRMLDIlGDYL-SIKGITFQRLDGTVPSAQRRISIDHFNapDSKDDvFLLSTRAGGLGINLMTADTVIIFDSDWNP 815
                 55667778899****************8755555.6779***********************77566778***************************** PP

                 HHHHHHHTTSSSTT CS
  Helicase_C  98 tsyiqriGRtgRag 111
                 +   q++ R++R+g
  CCD24268.1 816 QADLQAMARAHRIG 829
                 ************97 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 7.2
                  HTTTTSEEEEEESS CS
  Helicase_C   12 leeeggkilifvnt 25  
                  ++++++k+++f+  
  CCD24268.1 1130 TKRKEKKTIVFSFG 1143
                  56777888888765 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0     9e-11   1.6e-07       4     169 ..     396     564 ..     381     566 .. 0.78
   2 ?    0.1   0.6      0.41   7.3e+02      67     118 ..    1091    1152 ..    1068    1169 .. 0.58

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 9e-11
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka..... 96 
                 lr+ Q + i+ ++  +   ++ +g+++ + G GKT+   a + + ++  +++   l++vp    +  ++e+f+k+++e +  i+   ++++++      
  CCD24268.1 396 LRDFQLTGINWMAFLW--SKNDNGILADEMGLGKTVQTvAFISWLIYARKQNGPHLVVVPLS-TMPAWQETFEKWAPELNC-ICYMGNQRSRDTirefe 490
                 5666666665555444..68999*************88466666666666666888888865.5678**********9843.33333333333366799 PP

                 ..............-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T..TTHHHHHT---SEEEEEESS- CS
      ResIII  97 .......kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk..swreilekfkeavllglTATp 169
                        k k++ + ++l+tt++ + +d         el++ + +++ +DEaHrl+ ++   +++ l++fk + +l +T+Tp
  CCD24268.1 491 fytnpqaKGKKNVKFNVLMTTYEYILKDC-------SELGSIKWQFLAVDEAHRLKNAEssLYES-LNSFKVNNRLLITGTP 564
                 99988888888889999999999999999.......999999*************9974435555.9999***********9 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.41
                  HHHHHHHGGGGTGG.......GEEEESSS-B--..............-SEEEEEHHHHHHTH CS
      ResIII   67 leqtleefkkflseayke...igkkvsgdkkka.......kekdstnkkilvttiqsldads 118 
                   +q ++e+++ ++ ++++    + k+++++k++       k+k+++++ + +  ++sl+a+ 
  CCD24268.1 1091 RKQIMNELENEAKLYRADlksGKIKIEDQSKDNpnarlatKRKEKKTIVFSFGGVNSLNAEV 1152
                  45555666555555555554322334444444467888777777777777777788887776 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.9e-06     0.011       3      26 ..    1194    1218 ..    1192    1228 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5.9e-06
                       SSBHHHHHHHHHHHHHHT.TCHHHH CS
  Myb_DNA-binding    3 kWteeEdelLleavkkhG.nrWkkI 26  
                       +W +e+de+Ll +v k+G + W+ I
       CCD24268.1 1194 NWNKEDDEKLLVGVFKYGyGAWSQI 1218
                       7**********************98 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   2.7       2.7   4.8e+03       5      55 ..     962    1009 ..     960    1020 .. 0.61
   2 ?   -2.1   0.4       2.1   3.8e+03      15      48 ..    1089    1122 ..    1086    1126 .. 0.84
   3 !   16.8   0.0   2.9e-06    0.0052      17      77 ..    1157    1220 ..    1149    1222 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.7
       SLIDE    5 kqIekgekkieklkelkellkkkveqyknplqelkikyppsnkgkkeytee 55  
                  k+ + +e+k++ ++ +ke l+  +++ +  lq++k   ++s +++++y ++
  CCD24268.1  962 KKLKDEEQKRKDEEYIKEQLEM-MNRRDTALQKIK--NTISGNNEVTYDSD 1009
                  5566677777777777777753.444455555544..55555556667665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.1
       SLIDE   15 eklkelkellkkkveqyknplqelkikyppsnkg 48  
                  ek+k++++ l++  + y+ +l+  kik + ++k+
  CCD24268.1 1089 EKRKQIMNELENEAKLYRADLKSGKIKIEDQSKD 1122
                  789999999************9999998766554 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 2.9e-06
       SLIDE   17 lkelkellkkkveqyknplqelkikyp....psnkgkkeyteeeDrfllvllakyGygnyekikk 77  
                   + lk l +++++++k++  +++++ +    ++n  ++++++e D+ llv + kyGyg++ +i++
  CCD24268.1 1157 AEDLKFLRDEIIKHFKSDPLKFTLTPRipkvVQNW-SCNWNKEDDEKLLVGVFKYGYGAWSQIRD 1220
                  55555566678888888877777554444424554.566************************97 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.4e-05     0.024       1      24 [.    1195    1219 ..    1195    1243 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.4e-05
  Myb_DNA-bind_6    1 WteeEdeiLlklvekygn.dWknIa 24  
                      W +e+de+Ll +v+kyg+  W++I 
      CCD24268.1 1195 WNKEDDEKLLVGVFKYGYgAWSQIR 1219
                      *****************879****5 PP

>> CHDCT2  CHDCT2 (NUC038) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       4.7   8.5e+03     124     153 ..     602     633 ..     523     637 .. 0.65
   2 ?   -3.9   0.0       7.6   1.4e+04     130     147 ..     718     735 ..     685     743 .. 0.73
   3 ?   -4.2   0.3       9.6   1.7e+04      83     118 ..     977    1012 ..     965    1037 .. 0.49
   4 ?   15.0   0.0   1.1e-05      0.02       5      48 ..    1195    1238 ..    1193    1247 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.7
      CHDCT2 124 vlekvLnqlee.lLsdmkadvsr.lpatlsrl 153
                  ++++ ++l+  +L  +k+dv++ lp+   r+
  CCD24268.1 602 YIRHLHSRLQAfILRRLKKDVEKsLPSKTERI 633
                 33333333333256677777764466666665 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 7.6
      CHDCT2 130 nqleelLsdmkadvsrlp 147
                   l++lL+ +k+d +r+ 
  CCD24268.1 718 VLLDQLLTRLKKDGHRVL 735
                 458999999999988864 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 9.6
      CHDCT2   83 lqeekekvgslaqrfaelellaeshqkllkesaagn 118 
                  ++e+ e ++  ++ +++++++ + +++++ +s ++ 
  CCD24268.1  977 IKEQLEMMNRRDTALQKIKNTISGNNEVTYDSDDET 1012
                  344444444444444444444444444444444333 PP

  == domain 4  score: 15.0 bits;  conditional E-value: 1.1e-05
      CHDCT2    5 WhRrHDyWllagvvlhGyaRwqDiqndprfaiinepFkseaekg 48  
                  W++  D  ll+gv ++Gy+ w+ i +dp + + +  F +e++++
  CCD24268.1 1195 WNKEDDEKLLVGVFKYGYGAWSQIRDDPFLGLTDKIFLNESQSN 1238
                  99999***********************9999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1785  (0.0995594); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.22u 0.27s 00:00:01.49 Elapsed: 00:00:00.47
# Mc/sec: 9416.58
//
Query:       CCD24269.1  [L=585]
Description: hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-86  282.9   7.2    2.8e-21   75.1   0.2    4.3  4  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
    6.1e-18   64.8   1.1    5.1e-17   61.8   0.0    2.7  2  PABP             Poly-adenylate binding protein, unique domai
    2.3e-13   49.8   0.7       0.05   13.2   0.0    4.7  5  RRM_5            RNA recognition motif. (a.k.a. RRM, RBD, or 
    7.9e-07   29.1  10.1       0.51   10.4   1.5    5.1  5  RRM_3            RNA binding motif
    1.8e-06   28.0   1.0      0.045   13.9   0.0    5.1  4  RRM_7            RNA recognition motif
    1.2e-05   25.1   0.0      0.082   12.8   0.0    4.1  4  RRM_occluded     Occluded RNA-recognition motif
     0.0045   17.0   1.1         13    5.8   0.0    3.8  3  Nup35_RRM_2      Nup53/35/40-type RNA recognition motif
     0.0066   16.9   7.9       0.27   11.8   0.7    3.4  3  YflT             Heat induced stress protein YflT
  ------ inclusion threshold ------
       0.02   14.7   0.0         13    5.7   0.0    3.3  3  ACT              ACT domain
      0.026   14.7   3.2        2.8    8.2   0.3    3.4  3  Bac_DNA_binding  Bacterial DNA-binding protein
      0.065   12.9   5.2        8.4    6.2   0.2    3.6  3  OB_RNB           Ribonuclease B OB domain
        6.2    7.3   8.3        2.9    8.3   1.0    2.9  2  SAPIS-gp6        Pathogenicity island protein gp6 in Staphylo


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   4.1e-22   6.2e-19       1      69 [.      42     111 ..      42     112 .. 0.98
   2 !   75.1   0.2   1.9e-24   2.8e-21       1      69 [.     130     198 ..     130     198 .. 0.99
   3 !   72.9   0.8   9.1e-24   1.4e-20       1      69 [.     223     291 ..     223     291 .. 0.98
   4 !   68.2   0.1   2.6e-22   3.9e-19       1      69 [.     326     394 ..     326     395 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 4.1e-22
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+Vg+L p+v+e  L+++Fs++G+++si+++rd  t++s g+a+V+F+++e+ +kA+e+ln + ++gr +
  CCD24269.1  42 LYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDaITKTSLGYAYVNFNDHEAGKKAIEKLNYTPIKGRLC 111
                 8******************************************************************965 PP

  == domain 2  score: 75.1 bits;  conditional E-value: 1.9e-24
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +f++nL++d++++ L++ Fs fG i s k+ +detgkskgf+fV Fe+  +A++A++alng+ l+g+e+
  CCD24269.1 130 IFIKNLHSDIDNKALYDTFSVFGNILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEI 198
                 8*****************************************************************987 PP

  == domain 3  score: 72.9 bits;  conditional E-value: 9.1e-24
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++V+n++ ++t+ee  elFsk+G++ s+ l ++e+gk kgf+fV+Fe++edA+kA+e+lng +++++el
  CCD24269.1 223 IYVKNINLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAVEELNGSQFKDQEL 291
                 8****************************************************************9886 PP

  == domain 4  score: 68.2 bits;  conditional E-value: 2.6e-22
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lf++nL  ++++e+Lke F ++G i+s++++r+e+gks+gf+fV F ++e+A+kA+ + n + + g++l
  CCD24269.1 326 LFIKNLDDSIDDEKLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGKPL 394
                 8****************************************************************9987 PP

>> PABP  Poly-adenylate binding protein, unique domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2      0.59   8.8e+02       3      28 ..     377     406 ..     375     417 .. 0.69
   2 !   61.8   0.0   3.4e-20   5.1e-17      10      66 ..     499     557 ..     491     559 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.59
        PABP   3 elakaspeqqkqiLGerLypkiqkl....n 28 
                 + +++++++q+ + G+ Ly  i++      
  CCD24269.1 377 ATKAITEKNQQIVAGKPLYVAIAQRkdvrR 406
                 45667777777777******9998844443 PP

  == domain 2  score: 61.8 bits;  conditional E-value: 3.4e-20
        PABP  10 eqqkqiLGerLypkiqkl..npelAgKITGMLLemdnsellellesdeeLrekveeAie 66 
                 +q++q LGe+Ly+k++++  ++e AgKITGM+L+++ +++++lle+de+++++++eA +
  CCD24269.1 499 QQKRQALGEQLYKKVSAKnvDEEAAGKITGMILDLPPQDVVSLLENDELFDQHFKEASA 557
                 89****************44459**********************************86 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   5.8e-05     0.086      11     101 ..      24     118 ..      14     126 .. 0.80
   2 !   12.7   0.0   4.9e-05     0.074      24      97 ..     125     201 ..     118     224 .. 0.80
   3 !    5.9   0.1    0.0062       9.3      40     103 ..     233     298 ..     221     317 .. 0.71
   4 !   13.2   0.0   3.3e-05      0.05      26     108 ..     323     408 ..     307     420 .. 0.81
   5 ?   -1.7   0.2       1.4     2e+03      80     115 ..     538     574 ..     535     579 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5.8e-05
       RRM_5  11 svaatgspgaagvaegsVllVyglepdkvnldklFnlfclYgnvervk.....flktkketalvqmgdasaveravqHLnnaklfgkrlevalSKq 101
                 ++a+++ + a+  ++++ l V +l+p+      l+ +f+  g v+ ++     + kt  ++a v+  d  a ++a++ Ln +++ g+  +++ S +
  CCD24269.1  24 QTATSTPSSATTENSSASLYVGDLDPSV-SEALLYDIFSPIGSVSSIRvcrdaITKTSLGYAYVNFNDHEAGKKAIEKLNYTPIKGRLCRIMWSQR 118
                 33334446677778889999*****985.5678***********999833333567889***************************9999999876 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.9e-05
       RRM_5  24 aegsVllVyglepdkvnldklFnlfclYgnvervkflktk....ketalvqmgdasaveravqHLnnaklfgkrleva 97 
                 ++++ +++ +l+ d +  + l+  f+++gn+   k+        k+  +v   d +a++ a++ Ln+  l g+++ v 
  CCD24269.1 125 KGSANIFIKNLHSD-IDNKALYDTFSVFGNILSSKIATDEtgksKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVG 201
                 56777889999876.67789***********99999875411126778*************************98774 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0062
       RRM_5  40 nldklFnlfclYgnvervkflktk....ketalvqmgdasaveravqHLnnaklfgkrlevalSKqqa 103
                 + ++   lf+ Yg v    + kt     k+  +v+  +  ++ +av+ Ln+ +  +++l v  S+ q+
  CCD24269.1 233 TDEEFTELFSKYGKVLSAALEKTEdgklKGFGFVDFENHEDAAKAVEELNGSQFKDQELFV--SRAQK 298
                 33455679*******999999997222346689********************97776654..44444 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 3.3e-05
       RRM_5  26 gsVllVyglepdkvnldklFnlfclYgnvervkflktkketa....lvqmgdasaveravqHLnnaklfgkrlevalSKqqavseke 108
                 g  l++ +l+ d +  +kl   f+ Ygn+  v++++t ++++    +v  +   ++ +a++  n + + gk+l va+  ++ v  ++
  CCD24269.1 323 GVNLFIKNLD-DSIDDEKLKEEFAPYGNITSVRVMRTENGKSrgfgFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 408
                 4556777887.56888999999***************9876433339******************************9999987754 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 1.4
       RRM_5  80 avqHLnnaklfgkrlevalSKqqavse.kepfeledd 115
                  v+ L+n +lf+++ + a    q+  + ++  + +++
  CCD24269.1 538 VVSLLENDELFDQHFKEASAAYQSFKQeQQQQQQQQQ 574
                 567799999**99887666665555552444444444 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0     0.005       7.5      40      60 ..      84     104 ..      44     116 .. 0.69
   2 ?    3.7   0.0     0.041        61      11      60 ..     137     191 ..     129     208 .. 0.65
   3 !   10.4   1.5   0.00034      0.51       9      69 ..     228     291 ..     223     322 .. 0.77
   4 !    9.5   0.0   0.00064      0.96       1      60 [.     323     387 ..     323     426 .. 0.77
   5 ?   -1.4   0.2       1.6   2.4e+03      82      97 ..     558     573 ..     538     578 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.005
                 EEEEESSHHHHHHHHHHHHHC CS
       RRM_3  40 gevrFkedeeakkalekatea 60 
                 ++v F+++e++kka+ek+  +
  CCD24269.1  84 AYVNFNDHEAGKKAIEKLNYT 104
                 79**************98765 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.041
                 SS--HHHHHHHCHCCS-ECE..EEE-TTSSE...EEEEESSHHHHHHHHHHHHHC CS
       RRM_3  11 kelsredikellsklgevay..vdyekgdke...gevrFkedeeakkalekatea 60 
                 +++  + + +++s +g++    ++  ++ k+   g v F++d +ak+a++++  +
  CCD24269.1 137 SDIDNKALYDTFSVFGNILSskIATDETGKSkgfGFVHFEDDTAAKEAIDALNGM 191
                 555666666666666655321133333333223378*************988655 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00034
                 -SSS--HHHHHHHCHCCS-ECEEEE-TTSSE.....EEEEESSHHHHHHHHHHHHHC-B-CCTSSE CS
       RRM_3   9 lnkelsredikellsklgevayvdyekgdke.....gevrFkedeeakkalekateaklkikdaev 69 
                 +n e++ e++ el+sk+g+v   ++ek++       g v F+++e+a ka+e++  +  + kd+e+
  CCD24269.1 228 INLETTDEEFTELFSKYGKVLSAALEKTEDGklkgfGFVDFENHEDAAKAVEELNGS--QFKDQEL 291
                 6779999****************999987633344489**************99988..4444443 PP

  == domain 4  score: 9.5 bits;  conditional E-value: 0.00064
                 --EEEEEE-SSS--HHHHHHHCHCCS...-ECEEEE-TTSSE..EEEEESSHHHHHHHHHHHHHC CS
       RRM_3   1 GvilklsGlnkelsredikellsklg...evayvdyekgdke..gevrFkedeeakkalekatea 60 
                 Gv l+++ l++ +  e++ke ++ +g   +v+ +  e+g++   g v F ++eea ka+ +  + 
  CCD24269.1 323 GVNLFIKNLDDSIDDEKLKEEFAPYGnitSVRVMRTENGKSRgfGFVCFSTPEEATKAITEKNQQ 387
                 78889999999999************44444444555666653468********99998776654 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHCC--- CS
       RRM_3  82 ywkkiledkqkkknna 97 
                 +++ + +++q++++++
  CCD24269.1 558 AYQSFKQEQQQQQQQQ 573
                 4555555555555443 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.11   1.6e+02       3      66 ..      41      97 ..      39     111 .. 0.67
   2 !   13.9   0.0     3e-05     0.045       1      69 [.     127     187 ..     127     200 .. 0.79
   3 ?    2.6   0.0       0.1   1.5e+02       5      61 ..     224     272 ..     221     305 .. 0.61
   4 ?    2.7   0.0     0.089   1.3e+02       5      66 ..     327     380 ..     324     414 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.11
       RRM_7  3 kvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaL 66
                 ++vG l + ++e+ l++ f+  g+v+    +  + +      +k+  gy+++ f+d+++ k+ 
  CCD24269.1 41 SLYVGDLDPSVSEALLYDIFSPIGSVSS--IRVCRDA-----ITKTSLGYAYVNFNDHEAGKKA 97
                5788888888888888888888887642..1222222.....2334568999988888776655 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 3e-05
       RRM_7   1 srkvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLlea 69 
                 s  +F+  l  Di++++l++tf+ fg++l     k  +++     +   kg+ f+ fed+++ k+ ++a
  CCD24269.1 127 SANIFIKNLHSDIDNKALYDTFSVFGNILSS---KIATDE-----TGKSKGFGFVHFEDDTAAKEAIDA 187
                 6789***********************9743...222222.....223579999999999999887776 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.1
       RRM_7   5 FvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedek 61 
                 +v  +  + t+ee ++ f+++gkvl    +k+e            kg+ f+ fe+++
  CCD24269.1 224 YVKNINLETTDEEFTELFSKYGKVLSAALEKTED--------GKLKGFGFVDFENHE 272
                 5666667778888888888888886443333332........224566666666554 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.089
       RRM_7   5 FvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaL 66 
                 F+  l   i++e+lk+ f  +g+++     ++e       n k  +g+ f+ f++ +  ++ 
  CCD24269.1 327 FIKNLDDSIDDEKLKEEFAPYGNITSVRVMRTE-------NGK-SRGFGFVCFSTPEEATKA 380
                 677777789999999999999987632222221.......122.347777777654444444 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.87   1.3e+03      37      67 ..      80     110 ..      43     114 .. 0.77
   2 ?    3.3   0.0     0.049        73      42      71 ..     172     201 ..     166     205 .. 0.90
   3 !   12.8   0.0   5.5e-05     0.082      41      72 ..     264     295 ..     222     298 .. 0.68
   4 ?    2.9   0.0     0.066        99       6      40 ..     328     361 ..     325     400 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.87
  RRM_occluded  37 dheGAivefkdekiagkasLaLdgsefegkk 67 
                   + + A v f+d+++  ka+ +L+ + ++g+ 
    CCD24269.1  80 SLGYAYVNFNDHEAGKKAIEKLNYTPIKGRL 110
                   5556899999998888888888888888775 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.049
  RRM_occluded  42 ivefkdekiagkasLaLdgsefegkklrcG 71 
                   +v f+d ++a  a+ aL+g+ ++g+++ +G
    CCD24269.1 172 FVHFEDDTAAKEAIDALNGMLLNGQEIFVG 201
                   689999999999999***********9888 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 5.5e-05
  RRM_occluded  41 AivefkdekiagkasLaLdgsefegkklrcGt 72 
                    +v f+++++a+ka+ +L+gs+f++++l ++ 
    CCD24269.1 264 GFVDFENHEDAAKAVEELNGSQFKDQELFVSR 295
                   579*********************99997765 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.066
  RRM_occluded   6 llplsDtvnkariralveekegeikkivLvpdheG 40 
                   + +l D + ++++++ + ++ g+i+ + ++   +G
    CCD24269.1 328 IKNLDDSIDDEKLKEEFAPY-GNITSVRVMRTENG 361
                   5699****************.****9988777776 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.039        58      21      52 ..     148     184 ..     142     185 .. 0.89
   2 ?    3.6   0.0     0.046        68      33      53 .]     253     278 ..     223     278 .. 0.76
   3 !    5.8   0.0    0.0089        13      21      52 ..     344     380 ..     343     381 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.039
  Nup35_RRM_2  21 FasfGeIvkhyvp.....kevsvmyvkfesekdaekA 52 
                  F +fG+I    +      k++ + +v fe+  +a+ A
   CCD24269.1 148 FSVFGNILSSKIAtdetgKSKGFGFVHFEDDTAAKEA 184
                  889*****977777899999**************998 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.046
  Nup35_RRM_2  33 p.....kevsvmyvkfesekdaekAL 53 
                  +     k + + +v fe+  da+kA+
   CCD24269.1 253 EktedgKLKGFGFVDFENHEDAAKAV 278
                  455556777899*************8 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0089
  Nup35_RRM_2  21 FasfGeIvkhyvp.....kevsvmyvkfesekdaekA 52 
                  Fa +G+I+   v      k++ + +v+f ++ +a kA
   CCD24269.1 344 FAPYGNITSVRVMrtengKSRGFGFVCFSTPEEATKA 380
                  7779999998888888999999*************99 PP

>> YflT  Heat induced stress protein YflT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.18   2.7e+02       4      77 ..     175     254 ..     173     263 .. 0.73
   2 !   11.8   0.7   0.00018      0.27       4      73 ..     268     342 ..     266     349 .. 0.80
   3 ?    5.6   0.1     0.015        22       4      50 ..     371     417 ..     369     432 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.18
        YflT   4 yeneeellsaieelkaeGyneddiyvvak..dkdrlerla....entdaetettseeglwdsiknlfrskgdelrekles 77 
                 +e+++ +++ai+ l+    n ++i+v  +  +k+r ++l+    + t++ +++++ e+  +++ +lf++ g+ l ++le+
  CCD24269.1 175 FEDDTAAKEAIDALNGMLLNGQEIFVGPHlsRKERDSQLEeskaNFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEK 254
                 67788888888888888888888888543222333333333335888888888888999999999999999988888875 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00018
        YflT   4 yeneeellsaieelkaeGyneddiyv..vakdkdrlerlaentdaetettse..eglwdsiknlfrs.kgdelre 73 
                 +en e++ +a+eel+ + +++++++v  + k+ +r+++l+++++a+  ++ +  +g+   iknl  s ++++l+e
  CCD24269.1 268 FENHEDAAKAVEELNGSQFKDQELFVsrAQKKYERMQELKKQYEASRLEKMAkyQGVNLFIKNLDDSiDDEKLKE 342
                 7999**********************444567789***********99988778888777777766644444555 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.015
        YflT   4 yeneeellsaieelkaeGyneddiyvvakdkdrlerlaentdaetet 50 
                 +++ ee+++ai e +++ ++ + +yv+  ++++++r + ++++++ +
  CCD24269.1 371 FSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 417
                 7899***********************99999998888777777655 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.16   2.4e+02      27      63 ..     153     189 ..     152     191 .. 0.92
   2 ?    5.7   0.0    0.0085        13      17      63 ..     237     282 ..     235     283 .. 0.88
   3 ?    3.0   0.0     0.059        88      27      61 ..     349     384 ..     348     389 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.16
                 EEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHH CS
         ACT  27 Nidsieqrssedkvagivfvvivvdeedleevlealk 63 
                 Ni s  ++++e +  + + +v+ +d+  ++e+++al+
  CCD24269.1 153 NILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALN 189
                 899999999999999*****************99997 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0085
                 HHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHH CS
         ACT  17 vfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealk 63 
                 ++ +++++g  +  +  ++ + k  + + +v+ +++ed+++++e+l+
  CCD24269.1 237 FTELFSKYGKVLSAALEKTEDGK-LKGFGFVDFENHEDAAKAVEELN 282
                 67788888888888888888888.*********************97 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.059
                 EEEEEEEEEESTT.ECEEEEEEEEEEHHHHHHHHHH CS
         ACT  27 Nidsieqrssedk.vagivfvvivvdeedleevlea 61 
                 Ni+s+ + ++e +   g+ fv++ + ee ++++ e+
  CCD24269.1 349 NITSVRVMRTENGkSRGFGFVCFSTPEEATKAITEK 384
                 9*************************9999999886 PP

>> Bac_DNA_binding  Bacterial DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0       0.1   1.6e+02      14      64 ..     137     188 ..     129     194 .. 0.82
   2 ?    8.2   0.3    0.0019       2.8      13      52 ..     229     268 ..     216     287 .. 0.78
   3 ?    2.2   0.0      0.14   2.1e+02       2      27 ..     405     430 ..     404     436 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.1
                      ----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEEEE.E--BS-B-TT CS
  Bac_DNA_binding  14 tgltkkdakrvveafldtikeaLkkgekvelsgFGtfkvke.rkartgrnpk 64 
                      +++ +k   ++++ f ++++++++ +e+ + +gFG  +  + ++a+++++  
       CCD24269.1 137 SDIDNKALYDTFSVFGNILSSKIATDETGKSKGFGFVHFEDdTAAKEAIDAL 188
                      56889999999************************99988756677776655 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0019
                      T----HHHHHHHHHHHHHHHHHHHHTT-EEEETTTEEEEE CS
  Bac_DNA_binding  13 ktgltkkdakrvveafldtikeaLkkgekvelsgFGtfkv 52 
                      + + t ++ +++++ + +++++aL+k e+ +l+gFG    
       CCD24269.1 229 NLETTDEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDF 268
                      34669999*********************99999995433 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.14
                      EHHHHHHHHHTT----HHHHHHHHHH CS
  Bac_DNA_binding   2 tkkeLieeiaektgltkkdakrvvea 27 
                       +++L+++i +++++  ++a+++  a
       CCD24269.1 405 RRSQLAQQIQARNQMRYQQATAAAAA 430
                      689*********99988888877655 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2    0.0056       8.4       5      17 ..     165     177 ..     164     185 .. 0.81
   2 ?    5.2   0.2     0.011        17       8      21 ..     261     273 ..     257     283 .. 0.81
   3 ?    1.6   0.0      0.15   2.3e+02       5      13 ..     361     369 ..     360     383 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0056
                 E-SSS-EEEEECT CS
      OB_RNB   5 ahkkGFGFlipde 17 
                 + +kGFGF+  ++
  CCD24269.1 165 GKSKGFGFVHFED 177
                 679*******998 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.011
                 SS-EEEEECT.TEE CS
      OB_RNB   8 kGFGFlipdegkeD 21 
                 kGFGF++ +  +eD
  CCD24269.1 261 KGFGFVDFEN-HED 273
                 9*******97.555 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.15
                 E-SSS-EEE CS
      OB_RNB   5 ahkkGFGFl 13 
                 + ++GFGF+
  CCD24269.1 361 GKSRGFGFV 369
                 6789****9 PP

>> SAPIS-gp6  Pathogenicity island protein gp6 in Staphylococcus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   1.1      0.26   3.8e+02      46      67 ..     299     321 ..     269     326 .. 0.69
   2 ?    8.3   1.0     0.002       2.9      22      66 ..     536     579 ..     522     581 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.26
   SAPIS-gp6  46 lreneqekkkeyqes.lqklAkq 67 
                   e  qe kk+y+ s l k+Ak 
  CCD24269.1 299 KYERMQELKKQYEASrLEKMAKY 321
                 34566888999986549999995 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.002
   SAPIS-gp6  22 eDknlLieAvdlDiKnnmqeiskElreneqekkkeyqeslqklAk 66 
                 +D   L+e  d+ + +  +e s   +  +qe+++++q++ q  A 
  CCD24269.1 536 QDVVSLLEN-DELFDQHFKEASAAYQSFKQEQQQQQQQQQQPAAE 579
                 555555554.67799999999999999999999999998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1754  (0.0978303); expected 358.6 (0.02)
Passed bias filter:                      612  (0.0341346); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 4198.22
//
Query:       CCD24270.1  [L=1595]
Description: hypothetical protein NDAI_0C06110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-78  261.5  28.2    8.8e-78  261.5  28.2    2.4  3  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    7.5e-19   67.2   1.5    2.2e-18   65.7   1.5    1.8  1  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    1.2e-11   44.6   0.0    5.4e-11   42.4   0.0    2.1  2  Cation_ATPase    Cation transport ATPase (P-type)
    4.7e-09   36.8   0.5    0.00029   21.2   0.0    2.8  2  Hydrolase        haloacid dehalogenase-like hydrolase
    5.2e-05   22.8   0.0    5.2e-05   22.8   0.0    2.1  3  E1-E2_ATPase     E1-E2 ATPase
     0.0033   17.2   0.2     0.0071   16.1   0.2    1.5  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.025   14.2   4.7        5.1    6.7   0.0    2.6  2  DUF4131          Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.9       1.7   4.4e+03     146     172 ..     213     239 ..     198     258 .. 0.57
   2 ?   -1.2   0.5      0.54   1.4e+03     137     174 ..     578     619 ..     554     663 .. 0.50
   3 !  261.5  28.2   3.4e-81   8.8e-78       1     249 []    1164    1414 ..    1164    1414 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.7
  PhoLip_ATPase_C 146 ktndlqlfgtlvftalvlvvnlkvale 172
                       ++++q+f ++ f +l+++  ++++  
       CCD24270.1 213 IMFQFQNFANVYFLILIILGAFQIFGV 239
                      445666666666666666666666544 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.54
  PhoLip_ATPase_C 137 lddssfs.dgktndlqlfgtlvftalv...lvvnlkvaletk 174
                      ++  +++ + ++ d+++fgt++ +a+    + + + v+l+ +
       CCD24270.1 578 INGVNYDkHPRSRDFFEFGTVAGSAATngfVSFWVAVILYQS 619
                      222222245666666666665433332100223333333222 PP

  == domain 3  score: 261.5 bits;  conditional E-value: 3.4e-81
  PhoLip_ATPase_C    1 vraSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsae 92  
                       v++SDyai+qFr+L+rL+lvhGrwsy+R+s++i  ffyKnv+ftl++fw+++yn f g++lye++++++ynl ftslpvi++gi+dqd +++
       CCD24270.1 1164 VMCSDYAIGQFRYLTRLVLVHGRWSYKRLSEMIPAFFYKNVIFTLALFWYGIYNDFDGSYLYEYTFMMFYNLAFTSLPVIFMGIMDQDTNDT 1255
                       799***************************************************************************************** PP

  PhoLip_ATPase_C   93 lllkyPelYklgqknklfnlktfllwileglyqsliifflsylvlddssfs...dgktndlqlfgtlvftalvlvvnlkvaletktwtlili 181 
                       ++l +P+lY++g  +  +n+++fl+++l+glyqs+i+ff++y++++ +++    +   ++ +++g++v+t +vl +nl+++l+ ++w++++ 
       CCD24270.1 1256 ISLVMPQLYRRGILRLDWNQTKFLWYMLDGLYQSCICFFFPYAMYHRTMIIthnGLGLDHRFYVGVMVATLAVLSCNLYILLHQYRWDWFSG 1347
                       ********************************************9888877786566677789***************************** PP

  PhoLip_ATPase_C  182 ililgsillyflflllyssllpsssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffps 249 
                       ++i +s+l++f+++ ++ss++  s+e ++++++++s+psfw+vl++ +v +llp+++  ++++ f+p+
       CCD24270.1 1348 LFIALSCLVLFFWTGVWSSVVH-SKELFKAASRIYSTPSFWAVLFVGIVYCLLPRFTLDCFQKFFYPT 1414
                       *******************877.799999*************************************97 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   1.5   8.7e-22   2.2e-18      12      63 ..     191     242 ..     173     246 .. 0.89

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 8.7e-22
  PhoLip_ATPase_N  12 kkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqisplsp 63 
                       +y++NkI+T+KYt ltFlpkn++ qF+++aN+YFL+++il  +  + +++p
       CCD24270.1 191 MEYPRNKIRTTKYTPLTFLPKNIMFQFQNFANVYFLILIILGAFQIFGVTNP 242
                      48****************************************9999988887 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.1e-14   5.4e-11       2      89 ..     784     890 ..     783     892 .. 0.87
   2 ?   -2.4   0.0       2.1   5.4e+03      16      28 ..     993    1005 ..     986    1011 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 2.1e-14
  Cation_ATPase   2 lcNsaafsensekdevk...llGnktEsALlvlaekl............gldteelreetkkvqeipFnssrKrmsvvlkle.....pekkvrlyv 77 
                    lc+s  +++n+ ++ +k   +  +++E+AL+  a+++             ++ +  ++e++++++++Fns+rKrms ++k+      +e + +l++
     CCD24270.1 784 LCHSVLVEPNKHDS-KKldlKAQSPDEAALVGTARDVgfsfvgktkeglIIELQGSQKEFQILNILEFNSTRKRMSCIVKIPgtnpgDEPRALLIC 878
                    78888883333322.22233899***********************9999999999**************************************** PP

  Cation_ATPase  78 KGApeiilkrCt 89 
                    KGA  ii++r +
     CCD24270.1 879 KGADSIIYSRLS 890
                    ********9976 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.1
  Cation_ATPase   16 evkllGnktEsAL 28  
                      + l+G+k E+A+
     CCD24270.1  993 LWVLTGDKVETAI 1005
                     6889********8 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.1e-07   0.00029       2     153 ..     670    1009 ..     669    1044 .. 0.84
   2 !   12.7   0.1   4.4e-05      0.11     173     210 .]    1112    1150 ..    1075    1150 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.1e-07
                  SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHH....HHHHHHHHHETTTE.......................HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxx.......................xxxx RF
   Hydrolase    2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakar....sgaltgfatfigrg.......................ayai 71  
                  + ++ Dk+GTLt+  ++ ++++                  +g+a+++a  ++    +++   +++ +gr                        ++  
  CCD24270.1  670 EYIFSDKTGTLTQNVMEFKKCTING-------------ISYGRAYTEALAGLrkrqGID---VEA-EGRRereeiakdrdimindlrrlshnsQFYP 749 
                  67899***************99999.............444555544444444222222...233.2222344556666344444443343334444 PP

                  THHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH................................................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................................. RF
   Hydrolase   72 gkpewltaldippdlgaaigsaqsqgrtvall................................................................. 103 
                      ++ ++ +  dl+ a g+ q++  ++++l                                                                 
  CCD24270.1  750 DDITFVSKE-FVRDLQGASGEMQQKCCEHFMLalalchsvlvepnkhdskkldlkaqspdeaalvgtardvgfsfvgktkegliielqgsqkefqil 845 
                  444455554.9999999999999999999999***************************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
   Hydrolase  104 ................................................................................................. 103 
                                                                                                                   
  CCD24270.1  846 nilefnstrkrmscivkipgtnpgdeprallickgadsiiysrlstrsgannetmlektalhleqyateglrtlclaqreltwseyvewnakydiaa 942 
                  ************************************************************************************************* PP

                  ...................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHH CS
                  ...................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  104 ...................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraan 153 
                                     +  + +  +i+d   + +++ + +  L +agi++++ltgd  eta  +  
  CCD24270.1  943 aaltnreeqlenvsdeierNLTLIGGTAIEDR--LQDGVPDSISLLGQAGIKLWVLTGDKVETAINIGF 1009
                  **************9999999999999*****..*****************************976655 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.4e-05
                  TTSHHHHHHHHHHHTST.GGGEEEEESSHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  173 kpspegkvaaireLqgk.peevamVGDgvnDaaalaaAg 210 
                   +sp++k a+++  +++    ++++GDg nD+a+++ A+
  CCD24270.1 1112 RVSPSQKAAVVKLVKVSlDVMTLAIGDGSNDVAMIQSAD 1150
                  69*************7753359**************997 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.4   3.0         7   1.8e+04     122     157 ..     220     255 ..     213     257 .. 0.62
   2 !   22.8   0.0     2e-08   5.2e-05      21     167 ..     407     629 ..     405     638 .. 0.73
   3 ?   -4.0   0.5       3.6   9.1e+03     140     157 ..    1340    1357 ..    1319    1378 .. 0.58

  Alignments for each domain:
  == domain 1  score: -6.4 bits;  conditional E-value: 7
                   HHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHH CS
  E1-E2_ATPase 122 lvpvvlliallvflialllgkslaeallralallva 157
                   ++ v +li++++ +++++   ++  a +  ++++++
    CCD24270.1 220 FANVYFLILIILGAFQIFGVTNPGLAAVPLIVIVII 255
                   566667777777777777666666566665555554 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 2e-08
                   GG--TTSEEEEETT-B--SEEEEEE.....E-SEEE-TTTS---S-EE-................................................ CS
  E1-E2_ATPase  21 kelvpGDivllkagdrvpaDgrive.....gsaevdesaLTGEslpvek................................................ 64 
                   k++++GD+v + ++d +paD+++++     g + +++  L GEs    +                                                
    CCD24270.1 407 KNIKVGDVVRIHNNDEIPADIVLLStsdsdGACYLETKNLDGESNLKVRqslkcshtirssrdvtrtrfwlesegphanlysyqgnlkwvdskdgdl 503
                   789**********************555544449**********9988889999********************99999999999999999999999 PP

                   .....G-TTEE-TT-EEEE-E.EEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT.......... CS
  E1-E2_ATPase  65 .....ekgdmvfsGtvvvsge.akavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla.......... 145
                        + ++m+  G++  + + a + V+ tg dt++     ++     kk+++ ++l+  ++  +++ ++++++  +i+ ++ +++           
    CCD24270.1 504 knepvTINNMLLRGCTLRNTKwAMGLVVFTGDDTKIMLNSGATP---TKKSRISRELNLSVSLNFLLLFIVCFVSGIINGVNYDKHPrsrdffefgt 597
                   99999999999999999995527789999999997644433333...55777777777666664444444444444444443222223556666666 PP

                   ..........HHHHHHHHHHHHHS-TTHHHHH CS
  E1-E2_ATPase 146 ..........eallralallvaaiPcaLplav 167
                              ++  a+ l  + +P+ L + v
    CCD24270.1 598 vagsaatngfVSFWVAVILYQSLVPISLYISV 629
                   66665555544555555555555666665555 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 3.6
                    TTSSTTHHHHHHHHHHHH CS
  E1-E2_ATPase  140 lgkslaeallralallva 157 
                    ++ +++  l+ al+ lv 
    CCD24270.1 1340 YRWDWFSGLFIALSCLVL 1357
                    444444555555555543 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   2.8e-06    0.0071     205     228 ..    1132    1155 ..    1118    1166 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.8e-06
                   GEEEEESSGGGHHHHHHSSEEEEE CS
  Hydrolase_3  205 eviafGDgeNDieMLeaaglgvAm 228 
                   +++a+GDg ND++M++ a++g+ +
   CCD24270.1 1132 MTLAIGDGSNDVAMIQSADVGIGI 1155
                   799**************9665533 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.002       5.1      28     135 ..     553     654 ..     524     659 .. 0.83
   2 ?    4.6   4.7    0.0089        23       7      54 ..    1319    1366 ..    1314    1398 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.002
     DUF4131  28 prrrvllllllllllallgfalrapqpnandlsqllesgqeviveGvvaslpeltgsgtrfvlevervlsagktkpvsgrvlvtvpkspaeglrpGdrl 126
                  +r   l+++l +ll++++++++   +++n   +    +++ +  G+va    ++g   +f+++v   +  +  +p+s  + v + k  ++++ +Gd+l
  CCD24270.1 553 ISRELNLSVSLNFLLLFIVCFVSGIINGVNYDKHPR--SRDFFEFGTVAGSAATNGFV-SFWVAV---ILYQSLVPISLYISVEIIKTAQAAFIYGDVL 645
                 555556777788888888888888888888888887..57777799*********885.5****8...89999999999999999999999******** PP

     DUF4131 127 rltgrlkrp 135
                 + +++l  p
  CCD24270.1 646 LYNAKLDYP 654
                 *****9877 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0089
     DUF4131    7 lvllalllllllllllllrrrprrrvllllllllllallgfalrapqp 54  
                  + ++++ l++l + l++l+ ++r+ ++ +l+++l +++l+f+  +++ 
  CCD24270.1 1319 VGVMVATLAVLSCNLYILLHQYRWDWFSGLFIALSCLVLFFWTGVWSS 1366
                  555555566666655555546666665555555555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.97u 0.26s 00:00:01.23 Elapsed: 00:00:00.46
# Mc/sec: 10363.35
//
Query:       CCD24271.1  [L=409]
Description: hypothetical protein NDAI_0C06120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.45   10.1   8.4      0.023   14.3   2.6    1.8  2  NESP55    Neuroendocrine-specific golgi protein P55 (NESP55)


Domain annotation for each model (and alignments):
>> NESP55  Neuroendocrine-specific golgi protein P55 (NESP55)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3      0.12   2.1e+03     214     243 ..     105     134 ..      93     147 .. 0.51
   2 ?   14.3   2.6   1.3e-06     0.023     101     167 ..     212     274 ..     165     314 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.12
      NESP55 214 eeeeeekkeekrqqrrcktkkparrrdqsp 243
                 eee e  +e   ++ +   ++ +++ d+ p
  CCD24271.1 105 EEEVESIQEIADNKGKSEMQQETKKDDPEP 134
                 333333334444444444444444444444 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.3e-06
      NESP55 101 pecley.deeeyetetdseteseseieseteietepetesetapttepetepedergpkratfnqslt 167
                 p+c+e   +  y+        +es+  s t +++e+e+e++   ++e e++ e e  p + t n  +t
  CCD24271.1 212 PKCIEKlRKSAYDSI-----TAESDDSSYTSYDSESESETDGDSASESESDTESEVEPSENTSNLNVT 274
                 556553133344433.....233333333333333333333333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1310  (0.073066); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2965.29
//
Query:       CCD24272.1  [L=732]
Description: hypothetical protein NDAI_0C06130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-16   59.1   0.8    1.4e-15   57.4   0.8    1.9  1  Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
  ------ inclusion threshold ------
      0.047   13.0   0.0       0.12   11.6   0.0    1.7  1  Rad21_Rec8    Conserved region of Rad21 / Rec8 like protein
        4.4    7.3  10.6        2.2    8.2   7.3    2.2  2  PGA2          Protein trafficking PGA2


Domain annotation for each model (and alignments):
>> Rad21_Rec8_N  N terminus of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.8   2.3e-19   1.4e-15      12     101 ..      16     126 ..       8     135 .. 0.78

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 2.3e-19
  Rad21_Rec8_N  12 gplakvWlaAtlek......................klskkeilevniekaveeIlnpeaplaLrlsgqLllGvvriyskkvkyllsDceealekik 86 
                   +++ +vWl+At++                        ++kk+i++v i++++++I ++e +l+Lr  ++Ll+Gv++ y+kk++++l+D+e++l++++
    CCD24272.1  16 QNVTTVWLLATTNLasssksltkgisssnntargngPIKKKDIFNVCIPQTCQTIQQNENQLSLRHVSNLLYGVTICYNKKIEFILNDLENVLIQLR 112
                   66788898888854467777777777777666666677*********************************************************** PP

  Rad21_Rec8_N  87 kafksi.keakidlpe 101
                   +      +  k++ + 
    CCD24272.1 113 RRNLMLfS--KTQNQR 126
                   94332212..222222 PP

>> Rad21_Rec8  Conserved region of Rad21 / Rec8 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.1e-05      0.12      15      39 ..     685     709 ..     672     713 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.1e-05
                 ---HHHHHHHHHHHHHHHHTSEEEE CS
  Rad21_Rec8  15 ktRkeAArlFyelLvLatkgvIkvk 39 
                  +R +AA +F++lL La+  vI+++
  CCD24272.1 685 VDRCVAAGAFFSLLNLASGAVIHLE 709
                 68999*****************986 PP

>> PGA2  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.5   8.7e+03      38      54 ..     120     136 ..     116     162 .. 0.52
   2 ?    8.2   7.3   0.00037       2.2      46     102 ..     284     339 ..     278     361 .. 0.58

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.5
        PGA2  38 kklqekqrekeeekeea 54 
                  k q++++++e +++ +
  CCD24272.1 120 SKTQNQRQQQEGNNDGD 136
                 44444444443333332 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00037
        PGA2  46 ekeeekeeaeekaakkakvspnalRggeak.sgesdedddegeeeed.vakasgvpewg 102
                 eke+eke+++e+++++ ++s n+l + ++  +g+++++    eee d ++++ ++ +++
  CCD24272.1 284 EKEKEKEKKQEEEKSQDQLSHNNLSEFNELhQGNNENEQ---EEEADlADESISSHDSN 339
                 455555555555555677999999888865233333333...33344344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1864  (0.103966); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 4869.59
//
Query:       CCD24273.1  [L=549]
Description: hypothetical protein NDAI_0C06140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     3e-159  530.9   0.0   3.4e-159  530.7   0.0    1.0  1  ICL         Isocitrate lyase family
    2.3e-06   27.2   0.0    3.9e-06   26.5   0.0    1.3  1  PEP_mutase  Phosphoenolpyruvate phosphomutase
  ------ inclusion threshold ------
      0.024   14.7   0.1          1    9.4   0.1    2.5  2  EcoEI_R_C   EcoEI R protein C-terminal


Domain annotation for each model (and alignments):
>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  530.7   0.0  5.7e-163  3.4e-159       3     526 .]      11     549 .]       9     549 .] 0.93

  Alignments for each domain:
  == domain 1  score: 530.7 bits;  conditional E-value: 5.7e-163
                 HXHHHHHTSGGGGG---SS-HHHHHHH--SS-...---THHHHHHHHHHHHHHHHHHT--EEEEB--SHHHHHHHH..HH-S-EEE-HHHHHHH-.-TT CS
         ICL   3 aevkkwwsdsrwrktkrvysaedivskrGnlk...ieyasseqakklfklleeheaektasktfGaldpvqvtqma..kyldtiyvsGwqsssta.sts 95 
                 + +++ww+++r+ +  r+y+a d+ ++rG++    i+y+ss+qakklfklle+h+++k+  +t G++dpvq+tq++  k +  +y+sGw +sst  s s
  CCD24273.1  11 KFIEQWWRSPRFANIERPYTALDVFKHRGSIPrsqIKYPSSVQAKKLFKLLENHFERKKPLHTLGVIDPVQMTQLSrsKEMKVVYLSGWACSSTLvSPS 109
                 5699**************************9656699*************************************96337899***********96377* PP

                 ----SS-S-S-TTHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHHHTTS--------EEEE-TT-SSSHHHHHHHHHHHHHTT-SEEEE-SB-TT----- CS
         ICL  96 nepspdladypmdtvpnkvehlflaqlfhdrkqkeerlkvkkeereklanvdylrpiiadadtGhGGltavvkltklfierGaaGihiedqasgtkkcG 194
                 n+ spd+ dyp++tvpn+ve +f+aq fhd+k   + lkv ++e +    vdy++piiad+d G G    v+kl+klf e+Gaa ih+edq  g k+cG
  CCD24273.1 110 NDVSPDFGDYPYTTVPNQVERIFKAQEFHDKK---AFLKVVENESNAEDMVDYMKPIIADGDMG-GSPHMVMKLSKLFAEKGAAAIHLEDQLLGGKRCG 204
                 ******************************98...5789999999999**************99.77889***************************** PP

                 ----EEE--HHHHHHHHHHHHHHHHHTT---EEEEE--GGGEEEES-TT-GGGGGGEEEE-...-TTS......--HHHHHHHHHHS---SHHHHHHHH CS
         ICL 195 hmaGkvlvpiqehinrlvairaqadilgsdllvvartdseaatlitstidtrdhafilGat...npdl......eeladllveaeaeGksGaelqaied 284
                 h++G vlvp  +h+ rl+a r q d+lg++ l++artds  a+l++s+ d rdh+fi G +   n++       +  +++lv+a+ +  + + + ++e+
  CCD24273.1 205 HLSGAVLVPTGDHLSRLIACRFQWDLLGTENLLIARTDSCNAKLLSSSCDPRDHEFIKGIShrlNKQDsigkdpRAWNEILVDAVSRKLDNDSMGQLEE 303
                 ***********************************************************8633332212344337799********************* PP

                 HHHHHS-EE-SHHHHHHHHHTSS-S-HHHHHHHHHHHHTT--HH...HHHHHHHHHH.SS----BTTSS--TT--EEE--SHHHHHHHHHHHTTS-SEE CS
         ICL 285 ewlkkaglklfeeavvdeieksklsnkkelikkftkkvkplselsnkearklakell.gkdiffdwelprvreGyyrykGgtqcsvvravafapyadli 382
                 +w ++ +l +f+e+v     +++++   +  +  +++  ++  ls ke   +a+++  + +i fdw++pr++eGyy +kG +++++ r++ f+py+d+i
  CCD24273.1 304 QWYHDNELLTFDETVERLFSNEDFQRYLRTKSMMMEQELKRPYLSLKEMEMIANKICpTINIGFDWDAPRTKEGYYIFKGCMEAAIRRSLVFSPYSDMI 402
                 ***************9999999999998888888999889999*************83569************************************** PP

                 E---SS--HHHHHHHHHHHHTT-TT-EEEEE--SSS-GGGTS-HHH.HHSHHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTHHH CS
         ICL 383 wmesklpdyaqakefaeGvkakvpeqklaynlspsfnwkkamsade.qetyikrlaklGyvwqfitlaGlhtnalisdkfakdyakrGmkaygeevqee 480
                 w+e+k+pd++qa+ f+e +++++p+ kl ynlspsfnw++ + + e  +t+i  la+ G++ q+++laGlh++ l+  ++ k++ ++Gm+ y+ +vqe+
  CCD24273.1 403 WLETKTPDLKQAQMFSEEIHSVYPHIKLVYNLSPSFNWSNHGYTPEtLKTFIWDLAQEGFILQLVSLAGLHSDGLAFWELVKSFENNGMQGYVSTVQER 501
                 **************************************9887665549*************************************************** PP

                 HHHHT-GGGSHHHHHTHHHHHHHHHHHH--XXXX..XXXXXXXXXXXX CS
         ICL 481 eidnGvdvvkhqkwsGaeyidellklvtGGvsst..aamGkGvtedqf 526
                 e++ G dv++hq+wsGaeyid+++++++ G ss   ++ G   te qf
  CCD24273.1 502 EREIGSDVLTHQRWSGAEYIDSVMQVIQNGSSSQtlSTSGDAFTETQF 549
                 ******************************998622467888999998 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   6.5e-10   3.9e-06      35     148 ..     101     245 ..      63     257 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 6.5e-10
  PEP_mutase  35 tsSlavaasl.GvpDgeelpleellaavraiaevvs........................lPlivDledGygespeevaetvrrliaaGvvgvniEDk. 107
                 +sS  v+ s    pD  + p +++ + v++i+++++                         P+i+D + G g+ p  v +  + +++ G++++++ED+ 
  CCD24273.1 101 CSSTLVSPSNdVSPDFGDYPYTTVPNQVERIFKAQEfhdkkaflkvvenesnaedmvdymKPIIADGDMG-GS-PHMVMKLSKLFAEKGAAAIHLEDQl 197
                 444444444434456677777777788888888777777888888888888888888888**********.88.************************9 PP

  PEP_mutase 108 ....kknd.aerqlldieefaekiaaaraaaeeag..fvinARtdall 148
                     +++  ++  l++  ++++++ a+r + +  g   +++ARtd++ 
  CCD24273.1 198 lggkRCGHlSGAVLVPTGDHLSRLIACRFQWDLLGteNLLIARTDSCN 245
                 997444456899999*************9999998999*******975 PP

>> EcoEI_R_C  EcoEI R protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.025   1.5e+02      81     120 ..     116     150 ..     115     169 .. 0.86
   2 ?    9.4   0.1   0.00017         1      34     104 ..     260     329 ..     251     360 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.025
   EcoEI_R_C  81 gldeeletrserverafkrwikekkfteeqrewLelildh 120
                 ++d++ +t +++ver fk      + + + +++L+ + + 
  CCD24273.1 116 FGDYPYTTVPNQVERIFKA-----QEFHDKKAFLKVVENE 150
                 67899**************.....9999999999888765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00017
   EcoEI_R_C  34 llkeLeekLkepppgitpealweayellek.kvspq.ltdlidlirkiagldeeletrserverafkrwikek 104
                  +k ++++L+++    +  + w++  l+++ ++  +   d +  + +  + d+el+t++e+ver f+++ +++
  CCD24273.1 260 FIKGISHRLNKQDSIGKDPRAWNEI-LVDAvSR--KlDNDSMGQLEEQWYHDNELLTFDETVERLFSNEDFQR 329
                 5666666666665555555555555.4544332..22347888888999999***************988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4334.19
//
Query:       CCD24274.1  [L=198]
Description: hypothetical protein NDAI_0C06150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-11   43.2   0.1    1.2e-10   41.5   0.1    1.7  1  Clat_adaptor_s  Clathrin adaptor complex small chain
  ------ inclusion threshold ------
       0.11   13.1   0.0       0.22   12.2   0.0    1.5  1  Ribosomal_S20p  Ribosomal protein S20


Domain annotation for each model (and alignments):
>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.1   1.3e-14   1.2e-10       1     136 [.       5     164 ..       5     170 .. 0.84

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 1.3e-14
                     -EEEEEEE-TTS-EEEEEESSSS-CHHHHHHHHHHHHHHHTT-SSS.....................-SEEEETTEEEEEEEETTEEEEEEEETT CS
  Clat_adaptor_s   1 mikaililnkkgkvrlakfytavddkkkqklieevyelvsaRdskl.....................sniveledlkviYkryasLYFvvivdeq 74 
                     +++a+lil+ +gk++ ak+y +   + +q+  +   +++s  ++++                      +i+ ++d+ ++Y++  ++  +vi   +
      CCD24274.1   5 TVEAVLILDSEGKRLYAKYYEPPHGSLEQQQTKTDSKAISLLHPHFktvkkqeefesklhaklgkqdDEIIIFNDHLILYQHTSDITLYVIGPIN 99 
                     589*****************77666555555555556666555555667788899************9**************9999999999999 PP

                     S-HHH...HHHHHHHHHHHHHHHCTS-SHHHHHHCHHHHHHHHHCCEETTEES---HHHHHHCHH CS
  Clat_adaptor_s  75 eneli...ilelihlfvesLdkyfgnVceldlvfnfekvylildEivsgGeiletskkevlkrve 136
                      ne+i   +l+ i+  ++++   +g V ++++ + +++v l++dE ++ G i+e    ++ +rv+
      CCD24274.1 100 GNEIIlddTLTGIKSSIDMIMGPYGGVDKRNIQEHYDEVLLAIDESIDNGIIMENFAATIAARVS 164
                     9999833457788888888888889*****************************99999998887 PP

>> Ribosomal_S20p  Ribosomal protein S20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.5e-05      0.22      40      79 ..     121     165 ..     106     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.5e-05
                     C.....-HHHHHHHHHHHHHHHHHHHCTTSSTCCHHHHHHHHHHH CS
  Ribosomal_S20p  40 a.....dkekaqealkkaiskidkaakkgvihkNtAaRkkSrlak 79 
                           dk ++qe + ++  +id +   g+i +N Aa   +r++k
      CCD24274.1 121 GpyggvDKRNIQEHYDEVLLAIDESIDNGIIMENFAATIAARVSK 165
                     3455568999***************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1484.47
//
Query:       CCD24275.1  [L=443]
Description: hypothetical protein NDAI_0C06160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-06   26.2   0.0    1.4e-05   25.0   0.0    1.6  1  Bromo_TP        Bromodomain associated
  ------ inclusion threshold ------
        0.3   11.5   6.3       0.96    9.9   6.3    1.8  1  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.6e-09   1.4e-05       2      73 ..       6      84 ..       5      88 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 1.6e-09
                HHHHHHHHHHHHHHHHHHT-SEE-HHHHHHHHHHHHHH....HHHHHHHHHHHH.TTSS-SS--..HHHHHHHHHHTT- CS
    Bromo_TP  2 elarsllkvvvsqileeaGfdsaeesaLEtLteiaqkY....irelgeqaksfa.ehagRsept..lkDvvltLqelgi 73
                 +++ ll+v+  q+l++ Gfd++++  ++t t++  k+    i+e+++ a++ a +h   + ++  l+D+ l++ +lgi
  CCD24275.1  6 DFYFGLLRVSMIQLLKSQGFDKSKPTTIDTITDLYLKFltllISEITRIAQARAgNHNELLDQSvvLQDITLAMTNLGI 84
                578999*******************************955555799999999999999999888889***********9 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.3   0.00011      0.96      15      47 ..     358     391 ..     350     411 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
  CENP-B_dimeris  15 esdeeeeeeeed.eededeeddedddevpvpsfg 47 
                      sdeee++e+ed  +ded++ d d +e  v  + 
      CCD24275.1 358 SSDEEENNEDEDvRKDEDDDIDMDPNETNVHNYN 391
                     4677776666652678888889999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1054  (0.0587874); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3401.10
//
Query:       CCD24276.1  [L=1231]
Description: hypothetical protein NDAI_0C06170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-73  245.5   1.9    5.8e-70  235.1   0.3    3.9  4  NUC173    NUC173 domain
    3.4e-05   23.7   0.2      0.041   14.2   0.0    5.0  6  HEAT      HEAT repeat
  ------ inclusion threshold ------
       0.17   12.3   0.4        6.2    7.3   0.0    3.7  5  HEAT_2    HEAT repeats
       0.46   10.7   7.3         23    5.2   0.1    4.8  4  RTP1_C1   Required for nuclear transport of RNA pol II C-term


Domain annotation for each model (and alignments):
>> NUC173  NUC173 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.34   1.5e+03      13      62 ..     277     333 ..     265     370 .. 0.69
   2 !  235.1   0.3   1.3e-73   5.8e-70       2     204 .]     416     617 ..     415     617 .. 0.97
   3 ?   -1.1   0.0      0.28   1.3e+03     166     187 ..     687     708 ..     654     713 .. 0.89
   4 !    6.6   0.0    0.0012       5.3       2      78 ..     929    1006 ..     928    1025 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.34
      NUC173  13 kyqaawkevlevlsalfeklgkrs......spllkkilktlgelreseef.elkkea 62 
                 + q  ++  +++++ lf+ + + s      +  + k++ t+  l+ s+++ +l  + 
  CCD24276.1 277 SEQYLVSAAFQCFENLFKSMAETSsisglaESNFLKVIDTIFTLKPSNTDsHLAGAW 333
                 556677788899999999998888554443334888888888888877542444444 PP

  == domain 2  score: 235.1 bits;  conditional E-value: 1.3e-73
      NUC173   2 llkaleslLslkyqaawkevlevlsalfeklgkrsspllkkilktlgelrese.ef.elkkeadevigaairamGpevvLevlPLnleeeeeeklsegr 98 
                 ++++l+ +Ls+ky++++ke+l++++++f+k+++rs+p+l   lk ++++r +e +f e+++ea++vig ai+a+Gpe+vLe+lPLnl ++  ++ ++gr
  CCD24276.1 416 ISDLLTTFLSIKYTHCAKEILNTVAVAFKKFRYRSTPALLAPLKIVDKWRCNEeNFlEFSNEAENVIGEAISAIGPEAVLELLPLNLIDP--SDSQPGR 512
                 678899***********************************************999********************************75..357**** PP

      NUC173  99 aWLLPlLrdnvrnaeLafFveellplaealeqkakeaeeakksveakiletlveqiWslLPsfcelptDlkesf.kklaklLsnaLyeqpeLrlticka 196
                 aWLLP+Lrd+++na+L++F++ + pl++++e+k +++   k+sv+ +i++t+v+q+Ws+LP+fcelp Dl+esf +++a+ Ls++Ly++++Lr+t c++
  CCD24276.1 513 AWLLPILRDYTKNAKLETFIKDISPLITSFESKFESLP--KESVQLRIFQTVVDQLWSTLPHFCELPIDLRESFtDEFASELSSLLYTKVDLRTTLCHS 609
                 *************************************9..9********************************************************** PP

      NUC173 197 LrkLvesn 204
                 L+ Lvesn
  CCD24276.1 610 LKVLVESN 617
                 ******98 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.28
      NUC173 166 tDlkesfkklaklLsnaLyeqp 187
                 +Dl+ +f+++  lL+na++e++
  CCD24276.1 687 SDLEMTFNNVCGLLKNAMNEES 708
                 7999999999999999999986 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0012
      NUC173    2 llkaleslLslkyqaawkevlevlsalfeklgkrs.spllkkilktlgelreseefelkkeadevigaairamGpevv 78  
                  + +++e  L+ + ++ +k  + ++++++  l ++  +p + ++l +l  + ++++ ++k ++++ i   ir  G e v
  CCD24276.1  929 IYDTVELYLTSNSREIVKSAIGFVKVCILGLSDELmRPKVPELLPKLLRWSHEHSGHFKAKVKHLIERLIRRFGYEYV 1006
                  667888899999999****************99998999***************99******************9987 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         4   1.8e+04       1      24 [.      36      60 ..      36      65 .. 0.65
   2 !   14.2   0.0   9.1e-06     0.041       4      30 ..     163     189 ..     161     189 .. 0.90
   3 ?   -2.1   0.0       1.6   7.1e+03      11      29 ..     276     294 ..     266     295 .. 0.71
   4 ?   -0.3   0.0      0.41   1.8e+03       7      28 ..     365     386 ..     359     388 .. 0.83
   5 ?    1.8   0.0     0.082   3.7e+02      14      28 ..     803     817 ..     797     819 .. 0.86
   6 ?   -1.9   0.0       1.3   5.7e+03      10      25 ..     837     852 ..     831     857 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4
                HHHHHHHHHT-.SSHHHHHHHHHHH CS
        HEAT  1 llPlllkllsD.pspeVReaAakaL 24
                +l ++ ++++D +s ++ ++ ++ L
  CCD24276.1 36 ILSAVEENIQDqESNDISKNLVNYL 60
                6888999999955555655555555 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 9.1e-06
                 HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   4 lllkllsDpspeVReaAakaLgalaev 30 
                  ll+l  Dp p+VR+ A++a+ +++++
  CCD24276.1 163 GLLELSLDPRPKVRKRALEAINNILSH 189
                 5899999*****************986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.6
                 -SSHHHHHHHHHHHHHHHH CS
        HEAT  11 DpspeVReaAakaLgalae 29 
                 +++    +aA++++ +l +
  CCD24276.1 276 SSEQYLVSAAFQCFENLFK 294
                 555666789****998865 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.41
                 HHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgala 28 
                   l+++ peV  +A ++L al+
  CCD24276.1 365 VYLKSETPEVYVSASQCLMALL 386
                 568999999999******9986 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.082
                 HHHHHHHHHHHHHHH CS
        HEAT  14 peVReaAakaLgala 28 
                  +VR +A+k++++l+
  CCD24276.1 803 KSVRFSAIKTIVELL 817
                 57**********997 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 1.3
                 T-SSHHHHHHHHHHHH CS
        HEAT  10 sDpspeVReaAakaLg 25 
                 +D + + R++A+++L 
  CCD24276.1 837 KDVNEKSRDMAFETLI 852
                 7889999******996 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.2   1.4e+04      32      56 ..      36      61 ..      10      70 .. 0.60
   2 ?    7.3   0.0    0.0014       6.2       4      35 ..     164     195 ..     155     210 .. 0.68
   3 ?   -1.6   0.0      0.81   3.6e+03      30      66 ..     357     393 ..     351     395 .. 0.70
   4 ?   -2.3   0.0       1.4   6.1e+03      53      76 ..     484     507 ..     479     514 .. 0.81
   5 ?   -1.5   0.0      0.79   3.5e+03      13      56 ..     756     814 ..     750     830 .. 0.54

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.2
      HEAT_2 32 alpaLvelled.edpavRraaaeaLg 56
                +l a+ e ++d e+ ++ ++ +++L+
  CCD24276.1 36 ILSAVEENIQDqESNDISKNLVNYLV 61
                35555555555345667777777665 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0014
      HEAT_2   4 LlqalendpdpevrraairaLgri.gnpealpa 35 
                 Ll++   dp p+vr++a++a+ +i  +p a p+
  CCD24276.1 164 LLELS-LDPRPKVRKRALEAINNIlSHPPAAPT 195
                 55533.688888888888888775345555555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.81
      HEAT_2  30 pealpaLvellededpavRraaaeaLgaigdpealpa 66 
                 pe+++ L  +l++e p+v   a + L a+ ++++ + 
  CCD24276.1 357 PEVFKVLSVYLKSETPEVYVSASQCLMALLTESVQDN 393
                 6777778888888888888777777777666555554 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.4
      HEAT_2  53 eaLgaigdpealpaLkellddddd 76 
                 ea++aig +++l++L   l d++d
  CCD24276.1 484 EAISAIGPEAVLELLPLNLIDPSD 507
                 789999999999999888887776 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 0.79
      HEAT_2  13 dpevrraairaLgrignp............ealpaLvell...ededpavRraaaeaLg 56 
                 d  v+++a r + ++ +             ++ +++++ +   +++   vR  a+++++
  CCD24276.1 756 DALVQKRAYRIITKLSELptgslavssyisDIEKIMIDSAetvQTSAKSVRFSAIKTIV 814
                 55555555555554333223333444444444555555553223344567777776665 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.3      0.42   1.9e+03      21      54 ..      17      49 ..      14      71 .. 0.76
   2 ?    4.6   0.0    0.0078        35      33      72 ..     243     297 ..     161     308 .. 0.66
   3 ?    5.2   0.1     0.005        23      35      70 ..     353     388 ..     334     398 .. 0.86
   4 ?   -2.2   0.0         1   4.5e+03      45      82 ..     794     831 ..     728     852 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.42
     RTP1_C1 21 vlLrkliekkskeavldiekilkllleaLkdeds 54
                +++r+ i +k  +++++i  il+ + e+++d++s
  CCD24276.1 17 SKIRSQIDSKL-DNQKHIAIILSAVEENIQDQES 49
                55666666664.588999999999999****998 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0078
     RTP1_C1  33 e...............avldiekilkllleaLkdedsYvYLnaikgLvaLadvfp 72 
                                 ++++ie++ ++ll   + +++Y+  +a +++++L + + 
  CCD24276.1 243 IrslrligaiiasgqwPIAQIESLCDILLGVTRSSEQYLVSAAFQCFENLFKSMA 297
                 0444444444444444899999999999999999999999999999999887664 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.005
     RTP1_C1  35 vldiekilkllleaLkdedsYvYLnaikgLvaLadv 70 
                 +++i++++k+l   Lk e + vY++a ++L aL + 
  CCD24276.1 353 LSKIPEVFKVLSVYLKSETPEVYVSASQCLMALLTE 388
                 57899***************************9865 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1
     RTP1_C1  45 lleaLkdedsYvYLnaikgLvaLadvfpeevlklLlee 82 
                   e+++ + + v  +aik++v+L   ++ +++ ++++e
  CCD24276.1 794 SAETVQTSAKSVRFSAIKTIVELLPLDHLSFIVRIVAE 831
                 44444444445556777777777776666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1152  (0.0642534); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.43
# Mc/sec: 8652.70
//
Query:       CCD24277.1  [L=120]
Description: hypothetical protein NDAI_0C06180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-25   87.1   0.1    8.2e-25   86.7   0.1    1.2  1  Ribosomal_S16  Ribosomal protein S16


Domain annotation for each model (and alignments):
>> Ribosomal_S16  Ribosomal protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.1   4.6e-29   8.2e-25       1      62 []      12      83 ..      12      83 .. 0.93

  Alignments for each domain:
  == domain 1  score: 86.7 bits;  conditional E-value: 4.6e-29
                   EESCTTCEEEEEEEEETTSSTTSSESEEEEEEETTTTSSTS.S..........EEE-HHHHHHHHHTTEEEE CS
  Ribosomal_S16  1 RfGrknrPfYrivvadsrkprdgrpiEklGtYdPlakkkekke..........velneerikyWlgvGAqpt 62
                   RfGrkn+P+Y+ivv+ ++k+rd++p+E+lGtY+P++k  ++ e          vel++ r+kyW+gvGAqpt
     CCD24277.1 12 RFGRKNAPLYNIVVTTKKKARDAKPLEVLGTYNPIPKIITPYErkrgilptkdVELDFSRAKYWIGVGAQPT 83
                   9*********************************987666622689*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 954.97
//
Query:       CCD24278.1  [L=439]
Description: hypothetical protein NDAI_0C06190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      211  (0.0117686); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3194.14
//
Query:       CCD24279.1  [L=851]
Description: hypothetical protein NDAI_0C06200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-50  170.9   0.0    3.6e-50  170.0   0.0    1.5  1  DEAD_2        DEAD_2
    5.2e-47  160.2   0.0      1e-46  159.2   0.0    1.5  1  Helicase_C_2  Helicase C-terminal domain
      8e-05   22.7   4.6      0.034   14.2   0.2    3.0  3  ResIII        Type III restriction enzyme, res subunit
    0.00069   19.4   0.0       0.12   12.1   0.0    2.4  2  DEAD          DEAD/DEAH box helicase
     0.0035   16.8   0.2       0.25   10.7   0.0    2.4  2  PhoH          PhoH-like protein
  ------ inclusion threshold ------
      0.015   15.5   0.8        0.2   11.9   0.2    2.5  2  DUF4611       Domain of unknown function (DUF4611)
      0.022   15.0   0.0        3.7    7.8   0.0    2.6  2  AAA_22        AAA domain


Domain annotation for each model (and alignments):
>> DEAD_2  DEAD_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   0.0   1.4e-53   3.6e-50       1     176 []     234     414 ..     234     414 .. 0.91

  Alignments for each domain:
  == domain 1  score: 170.0 bits;  conditional E-value: 1.4e-53
                 EEESSHHHHHHHHHHHHHHHHHCHH.....HS---EEEE--CCCC-SCHHCCCHHCCCCHHHHHHHHHCCHHCCHTTTTTT-SCC......CCHHHHHH CS
      DEAD_2   1 ycsRThsqleqvvkelkklesykkk.....kekvkvviLgSRknlCineevkkekkekavneaCkelkkkkaeekeekCsffenl......eelkklkk 88 
                 ++sRThsql+q+ ++l+  +  +++     +e++k+++LgS+k lCin++vkk k+++a+n+aC+e++++k+      C+f++n+      +++ + ++
  CCD24279.1 234 FTSRTHSQLSQFASQLRLPTFPSSFkddvpHERIKYIPLGSKKILCINPNVKKFKTVDAINDACSETRHSKE-----GCPFYQNTptwhndRDTLAFRD 327
                 78**************9865443325678899**************************************94.....7******987764444444599 PP

                 HHHHC---CHHHHHHHHHCT--HHHHHHHHHCCTSEEEEEHHHHTSCCCHHHHHT..GCGCEEEECTCCCHHHHHHHCC-EEEECHHH CS
      DEAD_2  89 llleevvdiedlvelgeklklCPYylsrelledadiiilpYqyLldekireslkgislknsivilDEAhNiedvceeaasveiseesl 176
                  + e v died v +ge+l++CPYy+ r  ++ a++i+lpYqyL++e++reslk i+l+nsivi+DEAhN++d++++++s+eis ++l
  CCD24279.1 328 NVYEDVHDIEDTVTVGESLGVCPYYAIRDSIPGAEVITLPYQYLFSESMRESLK-IDLENSIVIIDEAHNLIDTINSIHSAEISITDL 414
                 *****************************************************9.****************************97765 PP

>> Helicase_C_2  Helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   0.0     4e-50     1e-46       4     169 ..     647     827 ..     644     829 .. 0.91

  Alignments for each domain:
  == domain 1  score: 159.2 bits;  conditional E-value: 4e-50
  Helicase_C_2   4 llevvp..ggvlvffpSyklleevverlkeeleskki....eifveekeesrekvleeykek..kkkgaillavcrGklsEGidfsddllraviivg 92 
                   l++ vp  gg++ ffpSy++l+ +++++k+ +  +k+    +if e  +++  + l+ey+e+  +++gail+a+++GklsEGi+f+d+l+ra+++vg
    CCD24279.1 647 LSQNVPksGGIVGFFPSYQYLQFIIDKWKHAGLFDKLykirKIFFE--SKDGPDPLSEYSEAvtNGDGAILFAIVGGKLSEGINFQDNLCRAIVMVG 741
                   556666569*********************9865555555588887..8999999*****95569******************************** PP

  Helicase_C_2  93 lPfpnpkdpeveakreyldekgk.........knsgkewylpealravnQaiGRliRhkdDygaivllDeRfakeeireklpkwlr 169
                   lP+pn+ + e+  k+++l++k           + + +++y+  +++avnQ++GR+iRh++D+++++llD+Rf +++ir kl++w++
    CCD24279.1 742 LPYPNVFSGELLVKKNHLEKKILkeggskqdvSTATRNFYEIICMKAVNQSVGRAIRHANDHATVYLLDKRFISPNIRTKLSHWIS 827
                   *******************98878899999988899************************************************95 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   1.3e-05     0.034       3      50 ..      20      67 ..      18     202 .. 0.84
   2 !    9.6   0.0   0.00033      0.84     110     159 ..     367     419 ..     327     434 .. 0.68
   3 ?   -3.4   0.1       3.3   8.5e+03      86     120 ..     462     490 ..     443     516 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
                EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S CS
      ResIII  3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllk 50
                ++++ Q + ++ + + l+ +++k ++++ +TGtGKTl + +++i  l++
  CCD24279.1 20 KPYDIQLQLMKCVYDVLN-EDKKIAILESPTGTGKTLSLiCATITWLRE 67
                677889999999999998.8999999**********9775444444443 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00033
                 EHHHHHHTH........HHHTT.T-SEEEEETGGGTTS.....TTTHHH....HHT--- CS
      ResIII 110 tiqsldadseeeeeeseellrd.rfdviiiDEaHrlgak....kswrei....lekfke 159
                  +q l ++s     ++e+l+ d ++ ++iiDEaH+l +     +   ei    l+k+++
  CCD24279.1 367 PYQYLFSES-----MRESLKIDlENSIVIIDEAHNLIDTinsiH-SAEIsitdLQKCSK 419
                 566666666.....4444444405559*********99543321.22223344444444 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.3
                 EEEESSS-B--.......-SEEEEEHHHHHHTH.. CS
      ResIII  86 gkkvsgdkkkakekdstnkkilvttiqsldadsee 120
                 g++++  +        +n++  v +i++l++ +++
  CCD24279.1 462 GQEFNPSEIF------NNSNADVLNIHKLNKYIKR 490
                 3333333333......4677777788888777633 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   4.7e-05      0.12       2      43 ..      23      74 ..      22     283 .. 0.79
   2 !    5.0   0.0     0.007        18     123     147 ..     387     406 ..     362     424 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.7e-05
                HHHHHHHHHHH.....TTCEEEEEESTTSSHHHHHHHHHHHHHHHS.....T CS
                xxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF
        DEAD  2 diQaeaiplil.....gggdvlvaaeTGsGKTlaflipvlqivyet.....k 43
                diQ + +++++     +++  +++ +TG+GKTl  + + + ++ e+      
  CCD24279.1 23 DIQLQLMKCVYdvlneDKKIAILESPTGTGKTLSLICATITWLRENkadylA 74
                7888888888877765556788*****************9999664444440 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.007
                 EEEEEETHHHHHHTTTHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 123 rflVlDEadrlldqgfsdfinriln 147
                 +++++DEa++l d      in+i++
  CCD24279.1 387 SIVIIDEAHNLIDT-----INSIHS 406
                 589********998.....444443 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   9.9e-05      0.25      12      50 ..      32      71 ..      25     100 .. 0.84
   2 ?    3.3   0.2     0.019        49     118     131 ..     384     397 ..     382     405 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.9e-05
                HHHHHH.H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S CS
        PhoH 12 ylealk.kndivfaiGpaGtGKtylavalavealkkkkvk 50
                ++++l+ +++i +   p+GtGKt+  +++ ++ l+++k +
  CCD24279.1 32 VYDVLNeDKKIAILESPTGTGKTLSLICATITWLRENKAD 71
                5667776889**************9999999999998876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.019
                 B-SEEEEE-SGGG- CS
        PhoH 118 lndafvilDEAQnt 131
                 l++++vi+DEA n+
  CCD24279.1 384 LENSIVIIDEAHNL 397
                 89**********97 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   7.7e-05       0.2      21      76 ..      48     104 ..      37     114 .. 0.74
   2 ?    1.1   0.0      0.18   4.5e+02      37      59 ..     197     219 ..     194     227 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.7e-05
     DUF4611  21 apgeadrlksllsgvaqlreevsellstlveqeaqddvaaagdeeeegeded.deee 76 
                   g  + l  + + +  lre+ ++ l  + ++ + d+ +++++ + +++de+ de++
  CCD24279.1  48 PTGTGKTLSLICATITWLRENKADYLAGISKKTTIDSNENTEEHATNDSDEEeDEPD 104
                 45666778888999*******************999999988888876665504544 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.18
     DUF4611  37 qlreevsellstlveqeaqddva 59 
                 +l+++v +lls+l+ +e + d++
  CCD24279.1 197 KLNKDVQALLSKLETKERKLDQD 219
                 799**************544333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.018        47       4      22 ..      39      57 ..      36     102 .. 0.88
   2 ?    7.8   0.0    0.0014       3.7      84     105 ..     378     403 ..     346     430 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.018
      AAA_22  4 tagilvvtGesGtGKTtll 22
                +++i ++  ++GtGKT++l
  CCD24279.1 39 DKKIAILESPTGTGKTLSL 57
                789999999*******986 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0014
      AAA_22  84 qalrarav.ielliiDEaqhlr....s 105
                 + l+      +++iiDEa++l+    s
  CCD24279.1 378 ESLKID-LeNSIVIIDEAHNLIdtinS 403
                 333333.34899********9653321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1095  (0.0610742); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 6093.24
//
Query:       CCD24280.1  [L=593]
Description: hypothetical protein NDAI_0C06210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-10   40.0   0.1    5.9e-10   39.0   0.1    1.5  1  zf-TFIIIC    Putative zinc-finger of transcription factor III
     0.0004   20.6   0.1        1.3    9.4   0.0    3.4  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> zf-TFIIIC  Putative zinc-finger of transcription factor IIIC complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.1   6.6e-14   5.9e-10      17     101 .]     511     590 ..     495     590 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 6.6e-14
   zf-TFIIIC  17 cdagiples.lteaqckeGHvfsRCaltflaiqepkiskvCilcstevldeelveaqelikeeseksllriLleav.dtciycggkf 101
                 +++   +++  +++ +++G +++RCa t+l+++++k++  C + +t+v+d +  +++e         +++ Lle++ dt+iycg k+
  CCD24280.1 511 IEETFGFKDsTNTIISNDGNTWNRCAATLLPLLTTKVK-ICLVTKTRVIDITRDTQNE------YGWFTKTLLEVFgDTSIYCGSKM 590
                 556666665167899*********************98.**********999877766......44556889998779******986 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00014       1.3       7      68 ..     100     165 ..      96     183 .. 0.75
   2 !    5.4   0.1    0.0026        23      38      65 ..     189     216 ..     179     243 .. 0.77
   3 ?    1.3   0.0     0.047   4.2e+02      25      62 ..     324     362 ..     320     372 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00014
  ANAPC4_WD40   7 mDLiAlatedgellvfRl.ngqrvwtl..eedkedsevr.sLaWkpdgklLavaysdgevrlldae 68 
                   D +A+ t++g++lv+   ++    ++  ++++  s++  s++W+pdg+ L  + + g++ +++ +
   CCD24280.1 100 HDVFAVLTTNGNVLVCDKgKWGCYLDTpdTTHGLASRIYhSMEWSPDGHYLLAGNELGQLVVFKEN 165
                  58889999998888875437777777744333444455359**************99998887654 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0026
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrll 65 
                  +  v++++W +d++++a+  +++   + 
   CCD24280.1 189 NLWVTNIKWTEDDTIIAILDDNSMFAIT 216
                  6679**************9999887775 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.047
  ANAPC4_WD40  25 ngqrvwtl.eedkedsevrsLaWkpdgklLavaysdgev 62 
                  +++ vw+  ++ ++   + ++a +pdg  La+ y+  ++
   CCD24280.1 324 KWNAVWNEyNKYETTLFIYGVAVSPDGYSLAILYDIEKI 362
                  699999986778889999**************9986666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       559  (0.0311785); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4434.82
//
Query:       CCD24281.1  [L=1201]
Description: hypothetical protein NDAI_0C06220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-80  270.6  11.8    2.2e-80  269.7  11.8    1.4  1  NPC1_N          Niemann-Pick C1 N terminus
      5e-48  163.8  33.4    7.2e-47  160.0  30.2    3.5  1  Patched         Patched family
    1.7e-37  128.6   6.4    1.7e-37  128.6   6.4    2.8  3  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ
     0.0053   15.7   1.3     0.0053   15.7   1.3    2.2  2  MMPL            MMPL family
  ------ inclusion threshold ------
      0.023   12.4  25.7      0.042   11.5  19.8    2.5  3  ACR_tran        AcrB/AcrD/AcrF family


Domain annotation for each model (and alignments):
>> NPC1_N  Niemann-Pick C1 N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.7  11.8   6.3e-84   2.2e-80       3     241 ..      27     265 ..      25     268 .. 0.92

  Alignments for each domain:
  == domain 1  score: 269.7 bits;  conditional E-value: 6.3e-84
      NPC1_N   3 rCalygeCgkksifgkelpcpyn.....gpakelseearelLkelCpelfkeetkvCCdeeqletLkknlklaeellsrCpaClknflnlfCeftCspd 96 
                 +Caly++Cgk+s+fg+elpc+        +++++++e r+ ++++C+e++k+ +++CC+ +q+++Lk+nlk+a++l+s+CpaC+knf +lfC+ftCsp+
  CCD24281.1  27 QCALYDNCGKTSVFGSELPCVIPkddlsFQPEPPTQELRDFVADVCGEEWKDVDSLCCTMDQMKSLKENLKKAHPLISSCPACMKNFDSLFCHFTCSPQ 125
                 8*******************6541122235666888*************************************************************** PP

      NPC1_N  97 qskFlnvtktekkkeekeavkevdyliseefaekfydSCkdvkfpatngkamdlicGgaakknaqkwlkflgdeka.nggsPfqinfkls.eeeeeeee 193
                 qs+F+nvtkt+k+k++k++v+e+++++++++a++fy+SCk+vkf+atng+amdli+Gga  kn++++lkflgd+k+ +ggsPfqin+ +   +++ +e+
  CCD24281.1 126 QSEFVNVTKTTKSKTDKTVVDELSVFMNSSWASEFYESCKNVKFSATNGYAMDLIGGGA--KNYSQFLKFLGDKKPlLGGSPFQINYLYDiPPSSGKED 222
                 ***********************************************************..***************99*********97787889999* PP

      NPC1_N 194 gmeplneetlkCnesldessaCsCvDCeesCpakpelpelke.sfkvgg 241
                 +++++ne++++Cn   de+++C+C+DCe sC   pel++lk+ + +v++
  CCD24281.1 223 EFDYFNESVYACN---DEEYRCACSDCELSC---PELKPLKQgTHTVAN 265
                 *************...99*************...667666665555555 PP

>> Patched  Patched family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0  30.2     2e-50   7.2e-47      29     808 ..     401    1185 ..     388    1187 .. 0.77

  Alignments for each domain:
  == domain 1  score: 160.0 bits;  conditional E-value: 2e-50
     Patched   29 plkeekffpgkseekaryliitakdresknileesllnevvkindyisenveikeddkitktfkdlCsr.ycdlncpvnkhvsm......ellkrrh 118 
                  ++ke+++f ++  +  r  ++ + ++    +l +++++   k +++i+e ++  e+     t++dlC r   d  c  +++++              
  CCD24281.1  401 KYKEKQYFDEHFGPFYRTEQVFVVNETG-PVLSYETMDWWFKTEQEITESLQSSENV----TYQDLCFRpTEDSTCVIESMTQYfqgqlpD------ 486 
                  5666667777766666664444444444.4677777777777777777774444444....777777652345555555555543332220...... PP

     Patched  119 e....srlkltyPivkvlgtkiylgallggvkveeeegtlksakaivlqyflkldeeeveelskeyerelekllkdkyasehievsilhsqiledel 211 
                  e    +++     +  v+  + + ++l  +  + + ++   +a+a+v+++ l     +++  ++ +e++lek+l +   +e + +s+ ++ +le+el
  CCD24281.1  487 EdsweREIR-SCARSPVNCLPTFQQPLKEELLFSD-PN-PLEANAFVVTFLLS----NHSDSAELWEHQLEKYLLNLDIPEGLRISFSTEISLEKEL 576 
                  111111111.2223333333333333333333333.22.23466667777766....34556788******************************** PP

     Patched  212 qrnaktllpflvvtiaiLlvfsiivsvvlssdalkidwvrskpilailgvlspvlAivsslGlllwlGfrfnsi.vtvtPFLvLaiGvDdmflmvaa 307 
                  ++n +     +vv    L++f  ++    +       +   +++l  +g+l  + + v + Gll++lG+++  i   v+PFL+LaiG+D++fl+ ++
  CCD24281.1  577 NDNNDV----FVVCASYLVMFLYASWALKR------KLGGTRILLGFTGILIVISSAVCAAGLLSFLGIKSTLIiAEVIPFLILAIGIDNIFLITHE 663 
                  ***986....45555555555444444444......5999******************************9875168******************** PP

     Patched  308 wkrteakls...vkkrigealseagvaitiTslTdvlsFgiGaittlpaiqlFciytavailfdfiYqitffaavlaiaakaeaegrhsllliieke 401 
                  ++r++ + +   +++ i++++s   ++i +  l ++  F i a+  +pa+  F++y ava+lf+ i q+t + +vl + +++  + +          
  CCD24281.1  664 YDRLRDRMPdipINEIIIKTISRISPSIILSFLCQAGCFSIAALVSMPAVRNFALYSAVALLFNVILQLTAYISVLTLYENYFFQDE---------- 750 
                  ****999888889******************************************************************99988885.......... PP

     Patched  402 espsklqeiesessekdddkskeaeelkskffreiyapfllnksvrlvvlllfvvylaiaiyGcvnikegLepkklvledsplvevlkliekeiwke 498 
                        +++ ++      d  +++e      f+++y ++l  k++   +l++fv++ a ++  +  i+ gL+   ++ + s+lv+++++i    +k 
  CCD24281.1  751 -----YKRVTDGD-----DGMQDNEG----AFKKSYEKVLK-KKT--YILCFFVIWTAASLFFIPYIEFGLDQTMAIPQTSYLVDYFHDI-YDYLKV 829 
                  .....23344433.....22234444....78899988764.444..5667799************************************.8999** PP

     Patched  499 glqvevvvnNppdltikesrdrleelveefentp..yal........gkkstkfwlreyekflkqseleveeledeee................... 566 
                  g  v  v++N  +l+ +e++ ++   +   ++++  ++l          + +  w  ++  fl+    +    +   +                   
  CCD24281.1  830 GPPVYFVIKNL-NLKERENQRKICGKFTTCDQYSvaNILekersrstIVEPVANWFDDFMTFLNPQLDQCCRFK---Kgttdvcppfasprscetcy 922 
                  **********7.88887777776544444443331122310000000334456799999999976322333333...1345899************* PP

     Patched  567 ...............ewskeelesflkaaensl.wkkdlvwdnesdeettelkkfrftlalkdlseptdrtkllkelRsiadkeselnvtvfdedaa 647 
                                   +++  + +++ +     + ++  +    ++++t + +  f++a k l   +d  ++ +    i ++++ l+v  +   + 
  CCD24281.1  923 kqgewditmqgfpegDQFMKFFDMWIDTPSDPCpLGGKAPYSTAVSYSETGIISSTFRTAHKPLTSQKDFIDAYNDAIRISESFEGLEVFAYSPFYI 1019
                  *************98778999*******999877999999998899999999999****************************************** PP

     Patched  648 fadqlltilpstiqnivlallcmfvvallfipelitvlvitlsivsidigviGflslW.gvdLDpismitiimsiGfsvdlsaHiayafvrsekd.. 741 
                  f  q+ t+l+ t++ + +al++++ v+ +++ +l t+l++ ++ivs+ +  iG + +W  + L ++s++++++++G +v++  Hi  a+    k   
  CCD24281.1 1020 FFVQYRTLLSLTLTLVFSALALIAFVSGILLGSLKTALLV-SVIVSMVMIDIGSIMVWaNIPLNAVSLVNLVICVGLAVEFCIHIVRAYTVVPKGid 1115
                  **********************************999875.45666666666666666269************************766655444333 PP

     Patched  742 .dakeRvvealealgwPvvqgalST.ilgvlvLlfvdsymvqvFfktvvLvv.vigllHgLlilPillsl 808 
                   d ++Rv  a++++g  v++g + T ++gv vL+f  s + +vF   ++ ++ ++  +H+Ll+ P+lls 
  CCD24281.1 1116 tDRDSRVLYAMSTVGESVLKGITLTkFIGVCVLAFAQSKIFEVFYFRMWFSLiIVASIHALLFTPVLLSF 1185
                  8999*****************765549*****************7777776515678***********86 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.3       2.5     9e+03       5      22 ..     363     380 ..     361     383 .. 0.82
   2 !  128.6   6.4   4.7e-41   1.7e-37       4     137 ..     607     743 ..     605     754 .. 0.96
   3 ?    1.0  11.2     0.096   3.5e+02      12     133 ..    1059    1182 ..    1047    1186 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.5
                     HHHHHHHHHHHHHCCHHH CS
  Sterol-sensing   5 kfgLglagviivllsvas 22 
                     k++L+++++ii  +s++ 
      CCD24281.1 363 KIILSITIIIISFFSILF 380
                     789999999999999875 PP

  == domain 2  score: 128.6 bits;  conditional E-value: 4.7e-41
                     HHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCH...HHHHHHHHHHHCCCCHHCCCHHHHH CS
  Sterol-sensing   4 skfgLglagviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqrtsrslde...seriaealgevgpsilltsltella 95 
                     ++++Lg++g++iv++s +++ gll++lg+++tlii+ev+Pfl+la+g+dnif+++++++r+  + ++   +e i +++++++psi+l+ l ++ +
      CCD24281.1 607 TRILLGFTGILIVISSAVCAAGLLSFLGIKSTLIIAEVIPFLILAIGIDNIFLITHEYDRLRDRMPDipiNEIIIKTISRISPSIILSFLCQAGC 701
                     699**********************************************************999888888************************* PP

                     HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH CS
  Sterol-sensing  96 lllgaltdvpavqeFclfaavavlvdFllqitfFvavLsldi 137
                     + ++al+++pav++F+l++ava+l++ +lq+t++++vL+l++
      CCD24281.1 702 FSIAALVSMPAVRNFALYSAVALLFNVILQLTAYISVLTLYE 743
                     ***************************************976 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.096
                      HHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHCHHHHHHHHTTTCH..HHHHHHHHHHHCCCCHH.CCCHHHHHHHHHHH CS
  Sterol-sensing   12 gviivllsvasslgllaylgltltliilevlPflvlavgvdnifvlvkavqrtsrslde..seriaealgevgpsill.tsltellalllgal 101 
                        +iv + ++   +++ + +++l+ ++l v   + +   v+    +v+a++ +++  d   ++r+  a+++vg s+l+  +lt+++   + a+
      CCD24281.1 1059 VSVIVSMVMIDIGSIMVWANIPLNAVSL-VNLVICVGLAVEFCIHIVRAYTVVPKGIDTdrDSRVLYAMSTVGESVLKgITLTKFIGVCVLAF 1150
                      3333444444456788899999999988.65445555556777778********9988888**************998346788888886668 PP

                      CCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH CS
  Sterol-sensing  102 tdvpavqeFclfaavavlvdFllqitfFvavL 133 
                       + +  + F +   +++++   +++++F+ vL
      CCD24281.1 1151 AQSKIFEVFYFRMWFSLIIVASIHALLFTPVL 1182
                      89999999999999999999999999999987 PP

>> MMPL  MMPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.3   1.5e-06    0.0053     179     300 ..     616     740 ..     573     757 .. 0.85
   2 !    3.2  11.9    0.0099        35     146     303 ..    1032    1187 ..     987    1194 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.5e-06
        MMPL 179 vsllaalgl.vlilalllglelstfvlgllvvlliavGtDYallLvs....RyreelaagedreeaviravastgkvvtaaGltvaiamlgLvvarlpv 272
                 + ++++ ++ ++ l  +lg++ +  ++     l++a+G+D +++L++    R+r+++ + +   e +i+++ ++ + ++ + l+ a+ +   +++++p+
  CCD24281.1 616 ILIVISSAVcAAGLLSFLGIKSTLIIAEVIPFLILAIGID-NIFLITheydRLRDRMPDIPIN-EIIIKTISRISPSIILSFLCQAGCFSIAALVSMPA 712
                 44445555545555677788889999999999********.8888876666888888777666.8********************************** PP

        MMPL 273 laqvGvaialGvlvdvlivlTllPAllv 300
                 +++++++ a+++l+ v + lT   ++l+
  CCD24281.1 713 VRNFALYSAVALLFNVILQLTAYISVLT 740
                 ******************9998766665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0099
        MMPL  146 klievvtlvvilviLlivyrSlvaallplltvvvs.llaalglvlilalllglelstfvlgllvvlliavGtDYallLvsRyreelaagedree..a 239 
                   ++++ +l++i+ +  i+++Sl +all  ++v+vs +++ +g+++++a++   ++s +      v+ ++ ++ +++ +v R    + +g+d+++   
  CCD24281.1 1032 LTLVFSALALIAFVSGILLGSLKTALL--VSVIVSmVMIDIGSIMVWANIPLNAVSLV----NLVICVGLAVEFCIHIV-RAYTVVPKGIDTDRdsR 1121
                  46788999***************9986..46666615678999*****9976666543....34677888889**9966.77788999988765448 PP

        MMPL  240 viravastgkvvtaa.GltvaiamlgLvvarlpvlaqvGvaialGvlvdv.livlTllPAllvllG 303 
                  v  a+ ++g+ v+   +lt  i ++ L++a+ ++++ + + +  ++++++   +l ++P ll+++G
  CCD24281.1 1122 VLYAMSTVGESVLKGiTLTKFIGVCVLAFAQSKIFEVFYFRMWFSLIIVAsIHALLFTPVLLSFIG 1187
                  999******9998643889999************99888877777665441445555587777777 PP

>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0    0.0026       9.3     829     878 ..     545     595 ..     525     654 .. 0.78
   2 ?   -2.3   0.0      0.17   6.3e+02     500     546 ..     752     798 ..     714     801 .. 0.68
   3 ?   11.5  19.8   1.2e-05     0.042     338     488 ..    1036    1185 ..    1026    1188 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0026
                 HHHHHHHHCTT..SSTTEEEEEEHHHHHH.HHHHCHHHHHHHHHHHHHHHH CS
    ACR_tran 829 aeeavekiakkvklpegvtiewtgqaeqe.qeasnsllilvalalllvflv 878
                  e++ ek   ++ +peg++i+++++   e ++  n+ +++v ++ l++fl 
  CCD24281.1 545 WEHQLEKYLLNLDIPEGLRISFSTEISLEkELNDNNDVFVVCASYLVMFLY 595
                 456778888899**********98766550556677788888899999985 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.17
                 SHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH CS
    ACR_tran 500 kffrefnrlfealeraYakllekvlrhravvllvalvllvlsvllfv 546
                 k+ +  +  ++  e a++k+ ekvl+++  +l ++++  ++s++ ++
  CCD24281.1 752 KRVTDGDDGMQDNEGAFKKSYEKVLKKKTYILCFFVIWTAASLFFIP 798
                 555566666778889999**********************9999876 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 1.2e-05
                  HHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHTT--BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHH CS
    ACR_tran  338 leaivLvvlvvflFLqnlratlipaiavPlsllgtfavlkalgfslNlltLfgLvlAiGlvvDdAiVvvEnierkleeegekpleaalksmkeiqga 434 
                  + a++L++ v  + L++l+++l + ++v ++++    ++++ ++ lN+ +L+ Lv+ +Gl v   i +v     + +   +++   +l++m++++ +
  CCD24281.1 1036 FSALALIAFVSGILLGSLKTALLVSVIVSMVMIDIGSIMVWANIPLNAVSLVNLVICVGLAVEFCIHIVRAYTVVPKGIDTDRDSRVLYAMSTVGES 1132
                  5688999***********************************************************99987655555567788999*********** PP

                  HHHHHHHHHHHCTGGGGSBHHHHHHHHHHHHHHHHHHH.HHHHHHHCCHHHHHHH CS
    ACR_tran  435 lvaialvllavflPilflgGveGklfrqfaltivlail.lsvlvaltltPalcal 488 
                  ++ +  + l  f+ + +l   + k+f+ f + + ++++ ++ + al +tP+l + 
  CCD24281.1 1133 VLKG--ITLTKFIGVCVLAFAQSKIFEVFYFRMWFSLIiVASIHALLFTPVLLSF 1185
                  9976..566789999999999************99975157899*******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1251  (0.0697752); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.45
# Mc/sec: 8074.96
//
Query:       CCD24282.1  [L=202]
Description: hypothetical protein NDAI_0C06230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-25   88.2   3.7    3.1e-25   88.2   3.7    1.6  2  Mpv17_PMP22  Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> Mpv17_PMP22  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.64   1.2e+04      29      39 ..      80      90 ..      75     102 .. 0.60
   2 !   88.2   3.7   1.7e-29   3.1e-25       2      62 .]     120     180 ..     119     180 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.64
  Mpv17_PMP22 29 vWppaqlinFy 39
                 v +p+q+ n++
   CCD24282.1 80 VNLPFQVKNYS 90
                 55666766654 PP

  == domain 2  score: 88.2 bits;  conditional E-value: 1.7e-29
  Mpv17_PMP22   2 llegksleeikeelkekfwptlkanwkvWppaqlinFyfvPlkfRvlfvnvvslgWntyLS 62 
                   leg++ e +k ++ke++wptlk+nw++Wp++q inF++vP+++R+l+vnv++++WntyLS
   CCD24282.1 120 ALEGQPKEVAKLKIKEQWWPTLKTNWMIWPLFQSINFSLVPVQHRLLVVNVMAIFWNTYLS 180
                  69**********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1679.49
//
Query:       CCD24283.1  [L=710]
Description: hypothetical protein NDAI_0C06240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00042   20.5   3.0       0.13   12.4   0.1    3.5  4  PPR_2     PPR repeat family
  ------ inclusion threshold ------
      0.033   13.8   0.0        0.1   12.2   0.0    1.9  1  CagY_M    DC-EC Repeat
      0.059   13.5   3.7        0.2   11.8   0.1    3.6  4  PPR_3     Pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   2.3e-05      0.13       5      47 ..     304     346 ..     300     349 .. 0.91
   2 ?   -4.1   0.0         3   1.8e+04      26      37 ..     399     410 ..     398     411 .. 0.83
   3 !    6.7   0.2    0.0014       8.4       4      48 ..     488     533 ..     485     534 .. 0.93
   4 ?   -3.8   0.0       2.7   1.6e+04      34      40 ..     593     599 ..     590     600 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
       PPR_2   5 tyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikg 47 
                  +N lI  + ++ ++ +  +lf++ +  +++Pn+ T++ l+++
  CCD24283.1 304 NFNDLIYFYSNRFDFASVRELFKQSQLENIQPNTMTFNLLLRS 346
                 58999999999*****************************986 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 3
       PPR_2  26 fneMkkrglePn 37 
                  n+M  +g++ n
  CCD24283.1 399 INQMHTKGFPIN 410
                 589****99887 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0014
       PPR_2   4 vtyNtlIsglckkgkveeAfklfneMkkr.glePnsyTysilikgl 48 
                  t N+ +  ++k+g+++  + +fn   kr  + Pn  ++ +l+k+l
  CCD24283.1 488 KTLNCFLENFAKHGRIDLSLMIFNVCTKRfAILPNFDSFEMLFKSL 533
                 588*************************99*************987 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 2.7
       PPR_2  34 lePnsyT 40 
                 l+P+s+T
  CCD24283.1 593 LSPDSFT 599
                 7899999 PP

>> CagY_M  DC-EC Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.8e-05       0.1       4      25 ..     576     596 ..     575     597 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
      CagY_M   4 DCLknAkdeeErkeCLkgLsde 25 
                 +CLk   +e++  +C+k+Ls++
  CCD24283.1 576 NCLKHF-TEADFIKCEKLLSPD 596
                 8*****.**************8 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.37   2.2e+03      19      49 ..     261     292 ..     257     315 .. 0.75
   2 ?   11.8   0.1   3.3e-05       0.2      15      60 ..     302     347 ..     287     350 .. 0.89
   3 ?   -2.7   0.0       1.1   6.7e+03      22      46 ..     415     439 ..     400     441 .. 0.70
   4 ?   -0.5   0.1      0.22   1.3e+03      18      59 ..     490     532 ..     484     536 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.37
       PPR_3  19 thLL.tayanagnkklalevlermkkkgikPt 49 
                 + LL +  ++ +n   ++ ++ ++  + i Pt
  CCD24283.1 261 IGLLtHTTFYYRNSSKLNGIIPKILRNLIHPT 292
                 55552567888888888888888888888887 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.3e-05
       PPR_3  15 vvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgvi 60 
                 +  ++ L+  y n  +   + e +++ + + i+P+ +t+N +l  i
  CCD24283.1 302 ITNFNDLIYFYSNRFDFASVRELFKQSQLENIQPNTMTFNLLLRSI 347
                 6679999999999999999***********************9876 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.1
       PPR_3  22 Ltayanagnkklalevlermkkkgi 46 
                 +  ++++ ++   l++le +k + i
  CCD24283.1 415 IYTVMRNNDEYTGLQILEFLKNNNI 439
                 4556888888888889988888766 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.22
       PPR_3  18 YthLLtayanagnkklalevlerm.kkkgikPtvvtyNailgv 59 
                  +  L+ +a+ g  +l l +++   k   i P+ +++ ++ + 
  CCD24283.1 490 LNCFLENFAKHGRIDLSLMIFNVCtKRFAILPNFDSFEMLFKS 532
                 5666777777777777777777542556899******999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1234  (0.068827); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5170.27
//
Query:       CCD24284.1  [L=341]
Description: hypothetical protein NDAI_0C06250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.7e-123  411.3   0.5   2.3e-123  410.9   0.5    1.2  1  Pil1           Eisosome component PIL1
  ------ inclusion threshold ------
      0.021   15.0   0.6       0.17   12.1   0.3    2.5  2  PCP_red        Proto-chlorophyllide reductase 57 kD subunit


Domain annotation for each model (and alignments):
>> Pil1  Eisosome component PIL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.9   0.5  2.5e-127  2.3e-123       1     264 [.       1     263 [.       1     264 [. 1.00

  Alignments for each domain:
  == domain 1  score: 410.9 bits;  conditional E-value: 2.5e-127
        Pil1   1 mnraysirsskastasesqteaspksstkskrlfslkslrsslrkqaaasfsPelarrLakLikseknlvraheaaarerksiakqlseWGedtdddvs 99 
                 m+++ys+r+++a+tase q +++p+s+tks ++f+ +s++ss+rk++a++f+Pel+r+L++L+k+ek+++ra e++a+er+++a+qls+WG d+dddvs
  CCD24284.1   1 MHKTYSLRNQRAPTASELQAPPPPPSTTKS-KFFGKASIASSFRKSTAGNFGPELSRKLSQLVKTEKSVLRALEVVANERRAAARQLSLWGYDNDDDVS 98 
                 8*****************************.******************************************************************** PP

        Pil1 100 DvsDklgvllselgeledayadrldqsRatlKsirniEasvqpsRdkkekladeiaklkakepqserlvvlEqeLvraeaeslvaeaqlsnitReklke 198
                 Dv+Dklgvl++elgel+d+++d++dq+R+t+KsirniEasvqpsRd+kek++deia+lk+kep+s+++ vlEqeLvraeaeslvaeaqlsnitReklk+
  CCD24284.1  99 DVTDKLGVLMYELGELQDQFIDKYDQYRVTMKSIRNIEASVQPSRDRKEKITDEIAHLKYKEPNSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKA 197
                 *************************************************************************************************** PP

        Pil1 199 aytaefdaliEraeKlallarygkrLlellddspvtpGetrpaYdgaeatrqiladaedaLrewrl 264
                 ay++ fd++ E aeK+al+a+ygk+LlellddspvtpGe+rpaYdg++a+rqi++dae aL++w+l
  CCD24284.1 198 AYHYLFDSMTEMAEKFALIAGYGKALLELLDDSPVTPGESRPAYDGYDASRQIIMDAEAALESWTL 263
                 ****************************************************************97 PP

>> PCP_red  Proto-chlorophyllide reductase 57 kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.3   1.9e-05      0.17      11      44 ..     165     198 ..     164     198 .. 0.95
   2 ?   -0.8   0.0       0.2   1.8e+03      23      41 ..     209     227 ..     207     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
                 TS-HHHHHHHHHHHHHHHHHHT-SEE-HHHHHHH CS
     PCP_red  11 kiPffvRkkaRraaEklArerGleeVtvevveaA 44 
                 kiP++ +  +R++aE+l +e+ l+ +t e ++aA
  CCD24284.1 165 KIPVLEQELVRAEAESLVAEAQLSNITREKLKAA 198
                 89**************************999887 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.2
                 HHHHHHHHHT-SEE-HHHH CS
     PCP_red  23 aaEklArerGleeVtvevv 41 
                 +aEk+A  +G+ +  +e++
  CCD24284.1 209 MAEKFALIAGYGKALLELL 227
                 79****9999877666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1294  (0.0721736); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2549.97
//
Query:       CCD24285.1  [L=582]
Description: hypothetical protein NDAI_0C06260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-07   29.6  15.4    0.00012   22.3   1.8    3.0  3  zf-C2H2         Zinc finger, C2H2 type
    0.00066   20.0   0.3    0.00066   20.0   0.3    3.1  3  zf-H2C2_2       Zinc-finger double domain
     0.0011   19.6  10.0      0.027   15.3   1.2    2.8  2  zf-C2H2_4       C2H2-type zinc finger
  ------ inclusion threshold ------
        0.8   10.2   4.4        3.1    8.3   0.3    2.7  2  zf-met          Zinc-finger of C2H2 type
        1.6    8.5   6.5        2.3    8.1   0.4    2.7  2  zf-H2C2_5       C2H2-type zinc-finger domain
        8.4    7.0   7.4       0.94   10.0   1.0    2.5  2  Ribosomal_L35p  Ribosomal protein L35


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       5.7   1.7e+04      15      22 ..     419     426 ..     418     426 .. 0.81
   2 !   22.3   1.8   4.2e-08   0.00012       2      23 .]     492     513 ..     492     513 .. 0.97
   3 !   15.3   2.5   6.9e-06     0.021       1      23 []     519     543 ..     519     543 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.7
                 HHHHHHHC CS
     zf-C2H2  15 nLkrHirt 22 
                 nL  Hi+t
  CCD24285.1 419 NLHIHINT 426
                 89999986 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 4.2e-08
                 EETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirtH 23 
                 +C++Cgks +r s L++H+ +H
  CCD24285.1 492 QCHICGKSVTRTSTLQTHMLVH 513
                 7*******************99 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 6.9e-06
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 ++C   +C+k+F+ ksn++rH++ H
  CCD24285.1 519 FECVwsGCHKRFNVKSNMNRHYKLH 543
                 789999*****************99 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.54   1.6e+03      16      23 ..     492     499 ..     486     502 .. 0.83
   2 !   20.0   0.3   2.2e-07   0.00066       2      25 ..     506     531 ..     505     531 .. 0.93
   3 ?    0.7   0.7      0.27   8.1e+02       1      12 [.     535     546 ..     535     548 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.54
   zf-H2C2_2  16 eCplCdka 23 
                 +C  C+k+
  CCD24285.1 492 QCHICGKS 499
                 8*****98 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 2.2e-07
   zf-H2C2_2   2 LrrHirkHtgekpyeCp..lCdkaFk 25 
                 L+ H+ +Htg++p+eC    C+k+F+
  CCD24285.1 506 LQTHMLVHTGDRPFECVwsGCHKRFN 531
                 889**************988***995 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.27
   zf-H2C2_2   1 nLrrHirkHtge 12 
                 n +rH + H ++
  CCD24285.1 535 NMNRHYKLHLKK 546
                 689******876 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.2     9e-06     0.027       2      23 ..     492     513 ..     491     514 .. 0.94
   2 !    8.3   2.0    0.0016       4.7       1      23 [.     519     543 ..     519     544 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 9e-06
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkth 23 
                 +C+iCgks ++ ++L++H++ h
  CCD24285.1 492 QCHICGKSVTRTSTLQTHMLVH 513
                 8********99999*****999 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0016
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 f+C +  C+k+F+ k++++rH k h
  CCD24285.1 519 FECVWsgCHKRFNVKSNMNRHYKLH 543
                 6787788*****99999******99 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.3     0.001       3.1       2      20 ..     492     510 ..     491     512 .. 0.95
   2 ?    2.5   0.5     0.071   2.1e+02       6      21 ..     526     541 ..     525     541 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.001
      zf-met   2 yCelCnvtfnsesqlksHl 20 
                 +C +C ++++  s+l++H+
  CCD24285.1 492 QCHICGKSVTRTSTLQTHM 510
                 5*****************8 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.071
      zf-met   6 CnvtfnsesqlksHlq 21 
                 C+++fn +s+++ H++
  CCD24285.1 526 CHKRFNVKSNMNRHYK 541
                 **************96 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.4   0.00077       2.3      12      26 .]     502     515 ..     499     515 .. 0.90
   2 ?    2.6   1.1      0.04   1.2e+02      13      24 ..     533     543 ..     532     545 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00077
   zf-H2C2_5  12 wksnLkRHlrrkHtg 26 
                 + s+L+ H++ +Htg
  CCD24285.1 502 RTSTLQTHML-VHTG 515
                 679*******.***8 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.04
   zf-H2C2_5  13 ksnLkRHlrrkH 24 
                 ksn++RH +  H
  CCD24285.1 533 KSNMNRHYK-LH 543
                 9******88.66 PP

>> Ribosomal_L35p  Ribosomal protein L35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.0   0.00031      0.94      17      53 ..     481     516 ..     480     518 .. 0.91
   2 ?   -0.7   0.8      0.73   2.2e+03      39      56 ..     544     561 ..     524     565 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00031
  Ribosomal_L35p  17 gsGkikrkkagkrHlltkKstkrkrrlrktalvskad 53 
                     +sG ++r+k++  H+   Ks +r+  l+ + lv+ +d
      CCD24285.1 481 KSGRVRRRKSRQCHICG-KSVTRTSTLQTHMLVHTGD 516
                     79************555.****************988 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.73
  Ribosomal_L35p  39 rkrrlrktalvskadakr 56 
                      k++l +++l++ +++k 
      CCD24285.1 544 LKKQLANEVLADTTQKKE 561
                     355666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 4218.90
//
Query:       CCD24286.1  [L=762]
Description: hypothetical protein NDAI_0C06270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-40  138.2   1.3    3.5e-40  138.2   1.3    2.2  2  Peptidase_C48  Ulp1 protease family, C-terminal catalytic dom
  ------ inclusion threshold ------
       0.15   12.1   4.6        8.6    6.4   0.2    2.7  2  Tra_M          TraM protein, DNA-binding
        1.8    8.4   5.0        1.7    8.5   0.2    2.5  2  UPF0227        Uncharacterised protein family (UPF0227)


Domain annotation for each model (and alignments):
>> Peptidase_C48  Ulp1 protease family, C-terminal catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.1   6.7e+03     131     159 ..     454     480 ..     430     503 .. 0.61
   2 !  138.2   1.3   5.8e-44   3.5e-40       1     210 [.     588     755 ..     588     761 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.1
                    HHHHHHHHCCCCCSTT-.GGGEEEEEEE- CS
  Peptidase_C48 131 lkpyLleealkkkqkqldltpfeierltk 159
                    +k  Ll++ ++++ +  ++++f++e  ++
     CCD24286.1 454 IKNVLLDKRKNNNRN--QQSNFSNEDDMT 480
                    444444443222222..234555444444 PP

  == domain 2  score: 138.2 bits;  conditional E-value: 5.8e-44
                    ---BHHHHHHHHHHHHHHHHHCCCTCCCEEE--THHHHHHC..........SS.......TCHCHHHCTTCCCCCS..-GGG-SEEEEEEEC.TTE CS
  Peptidase_C48   1 ewlndtvidfylkllaerlesseskaervhflntffvskLtkavkdfkknkskkkfkeskkkdlyngvrrwtrkvnkedlfdkdiiyiPinedgkH 96 
                    +wlndtvi+f++k +       e+k e+v+ +n+ff++ L+                    +++y+ vrrw ++ +k+++ + d i++Pin++++H
     CCD24286.1 588 RWLNDTVIEFFMKVV-------EKKTENVVAFNSFFYTTLS--------------------ERGYSSVRRWLKR-KKAQISQLDKIFVPINLNQSH 655
                    6*************9.......7999***************....................99***********.6******************** PP

                    EEEEEEETCCCEEEEE-TTS-SSH.HHHHHHHHHHHHHHHHHCCCCCSTT-.GGGEEEEEEE-----SSCCCHHHHHHHHHHHHHCTHHCHHHHHS CS
  Peptidase_C48  97 WvlliinlpdktililDSlislhtvkkenrpinnlkpyLleealkkkqkqldltpfeierltkvpqqknsgDCGiyvlkfiellaegapqessvtl 192
                    W l++i++ +k+i + DSl+++++  +  +++n l+ y +ee+ ++  k++        r+  +pqq+n++DCG+yv++++ +l+++ + ++    
     CCD24286.1 656 WALCMIDISNKAISYIDSLSNGPS-AMSFAILNDLQNYVMEESQNTMGKDF------ELRHLSCPQQPNGFDCGVYVCMNAFYLSKNSNPTF---- 740
                    ************************.******************99999999......77777*****************************6.... PP

                    S.HHHHHHHHHHHTTHHH CS
  Peptidase_C48 193 tekdvdsfrkklaldiye 210
                    +++d+ ++r+++a     
     CCD24286.1 741 DSTDAARMRQYIAY---L 755
                    66********9994...3 PP

>> Tra_M  TraM protein, DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2    0.0014       8.6      27      94 ..     349     417 ..     343     439 .. 0.70
   2 ?    6.3   0.8    0.0015       9.1      12      71 ..     450     509 ..     443     517 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0014
       Tra_M  27 GarekdvsfsstssmlvelGlrvyeaqmerkesnfnqtefnkvl.lenvlktqfavakilGisslspei 94 
                 G+++k+    +  + lv+ G +      +r++s+fn+t+ + +l l+         ++i+  + l p++
  CCD24286.1 349 GSHDKNDYNKKSDTYLVQYGTQFIRKHHKRNNSQFNNTANDAMLvLKGRSDEATYLKQIFNGEHLIPKV 417
                 677777777788899***********************9776551333333344445555555666655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0015
       Tra_M  12 vlekinaivekrraeGarekdvsfsstssmlvelGlrvyeaqmerkesnfnqtefnkvll 71 
                 ++e i+ ++ ++r++  r+++ +fs+   m +     +  +  +++     +++++k l+
  CCD24286.1 450 LTETIKNVLLDKRKNNNRNQQSNFSNEDDMTIIKERTISSLERKKRTYLHQRLQYDKALI 509
                 67999*************************998877777777777777777777777765 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2   0.00029       1.7     129     175 ..     383     429 ..     349     436 .. 0.83
   2 ?    0.7   0.8     0.073   4.3e+02     104     162 ..     463     523 ..     451     542 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00029
     UPF0227 129 srlkrperilvllskqDevldyrravaefraaaeiveddgdHafkdv 175
                 ++ ++ + +lvl+++ De    ++ ++  + + ++++d+++H++k +
  CCD24286.1 383 FNNTANDAMLVLKGRSDEATYLKQIFNGEHLIPKVIQDEKNHQLKLL 429
                 45678899***********************************9866 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.073
     UPF0227 104 eavqstqetyvleeyhiielkalelsrlkrperilvllskq.D.evldyrravaefraaae 162
                 ++++  q+    +e+ +   k+ ++s l+r++r+++ +  q D   +d +++++++r+  e
  CCD24286.1 463 KNNNRNQQSNFSNEDDMTIIKERTISSLERKKRTYLHQRLQyDkALIDFEKEFKNYRDLLE 523
                 33444566666677778889999999*********98764424146799999999998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2325  (0.129678); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.25s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 5215.61
//
Query:       CCD24287.1  [L=382]
Description: hypothetical protein NDAI_0C06280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-52  177.7   0.0    3.1e-52  177.1   0.0    1.3  1  SIR2      Sir2 family
  ------ inclusion threshold ------
       0.24   11.3   2.2       0.39   10.6   2.2    1.2  1  HSDR_N    Type I restriction enzyme R protein N terminus (HSD
        2.9    8.1   5.5        1.3    9.2   0.1    2.4  3  FYVE_2    FYVE-type zinc finger


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.1   0.0   5.2e-56   3.1e-52       1     177 []      27     220 ..      27     220 .. 0.91

  Alignments for each domain:
  == domain 1  score: 177.1 bits;  conditional E-value: 5.2e-56
                 -GGGGGGGT---SSS.TTSHHHHSCHHHHSSHHHHHHHHHHHHH..HHHHHHHHHHCCTSS--HHHHHHHHHHHTTCEEEEEES-SSSHHHHTT-S..S CS
        SIR2   1 GAGiStesGipdfRs.keGlyaklakeelaspealfskkllvee..vfyniarellaeeaepnaaHkalkklekkgkllrliTQNiDgLekkaGsk..k 94 
                 GAGiSt++GipdfRs k+Gly++lak +l + ea+f+++ ++e+  +fy +a+el++ +++p++ H+++k +e+kg+l r++TQNiD+Le ++G+    
  CCD24287.1  27 GAGISTSCGIPDFRSpKTGLYHNLAKLKLPFAEAVFDIDFFQENpkPFYILAKELYPGNFKPTHFHYLMKLFEEKGRLRRIYTQNIDTLEMQTGIDpkY 125
                 9*******************************************999************************************************9989 PP

                 EEETTEEEEEEEETTTSBEEECCGGHCHHHCCTT.....B-TTTCCBEEEEE--CTSB-S.HHHHH......HHH.HHHH-SEEEEES--STSTT CS
        SIR2  95 vvelHGslakakcvkcekkldkeelqeeieaekvp....ecekcgkllkpdvvfFGealp.dklkk......lie.kveeadlllviGtSlkVap 177
                 ++e+HGs+a+ +c++c+k++ +e+ ++++++++ +    +c++cg+l+kp++vfFGe+lp + +++       ++ + ++  l++v GtSl+V+p
  CCD24287.1 126 IIEAHGSFASNHCIECDKNFPMEYFKSKLNEASNEyvfcKCDECGGLVKPNIVFFGEDLPlKFFEQwdqdllWMKsNKDKHPLVIVAGTSLAVYP 220
                 ***********************9999999887767777*********************54444422222223335567789**********98 PP

>> HSDR_N  Type I restriction enzyme R protein N terminus (HSDR_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.2   6.5e-05      0.39       7      89 ..     260     355 ..     257     368 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 6.5e-05
                 HHH.HHHHHHHHTT-EE...............----SHHHHHHHHHHHHHHHH..............-HHHHHHHHTT--HHHHHHHHHTS.-EEEE.. CS
      HSDR_N   7 leqelidellrelGyqvlskkdveiegrrpevrkskaevaleknlreqlgaln..............ikkltkrlalsdgnkefyellkeg.kvkfk.. 88 
                 +eq     l+++lG+q +  k +   +     ++  +e+ + + + + l++ln              ++k++k+   +++  +  ell +g ++++   
  CCD24287.1 260 TEQ-ITNRLVEKLGWQTEFDKLISKGE-----PSTSEEKETIEGILKDLENLNiedtkppklvkeeaLEKEKKSEMSYEELGDTSELLVRGeDITVAas 352
                 455.677888********999877333.....77778888999999999999999999*999887777777777779999999********99996656 PP

                 ..T CS
      HSDR_N  89 ..e 89 
                    
  CCD24287.1 353 ekA 355
                 431 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00023       1.3      43      87 ..     124     171 ..      93     183 .. 0.68
   2 ?   -3.0   0.0       1.3     8e+03      20      47 ..     255     282 ..     250     287 .. 0.70
   3 ?    0.5   0.8      0.11   6.9e+02       4      54 ..     288     336 ..     284     357 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00023
      FYVE_2  43 rellgnqaklgethCilCleefkllvnskrqCldCklnv...CkkCsv 87 
                 + ++  + +++++hCi C ++f +   +++  +  + +v   C +C+ 
  CCD24287.1 124 KYIIEAHGSFASNHCIECDKNFPMEYFKSKLNEASNEYVfckCDECGG 171
                 4567777899************99888887777776666322555765 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
      FYVE_2  20 klrkkeeeRlgelkeklekekskrellg 47 
                  ++ k e+  ++l+ekl + +   +l++
  CCD24287.1 255 IIKDKTEQITNRLVEKLGWQTEFDKLIS 282
                 5677778888889998877666555555 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.11
      FYVE_2   4 tdeeaehvlevvqrdeklrkkeeeRlgelkeklekekskrellgnqaklge 54 
                 t ee+e +  ++ +d +  + e+ +  +l+++   ek k++ ++  ++lg+
  CCD24287.1 288 TSEEKETIEGIL-KDLENLNIEDTKPPKLVKEEALEKEKKSEMSY-EELGD 336
                 567777776655.67777778888889998887788888887776.45554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2728.09
//
Query:       CCD24288.1  [L=454]
Description: hypothetical protein NDAI_0C06290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3459.78
//
Query:       CCD24289.1  [L=614]
Description: hypothetical protein NDAI_0C06300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-41  140.1   0.1    1.6e-40  138.7   0.1    1.7  1  DEAD           DEAD/DEAH box helicase
    5.5e-24   84.6   0.0    9.7e-23   80.6   0.0    2.7  2  Helicase_C     Helicase conserved C-terminal domain
    7.4e-16   58.1   0.4    1.6e-15   57.1   0.4    1.6  1  DUF4217        Domain of unknown function (DUF4217)
    7.3e-08   32.6   1.9    9.2e-08   32.3   0.0    2.1  2  ResIII         Type III restriction enzyme, res subunit
      0.007   15.6   0.0      0.007   15.6   0.0    2.3  2  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
  ------ inclusion threshold ------
      0.086   13.1   0.1       0.49   10.7   0.1    2.3  1  AAA_22         AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.1   5.5e-44   1.6e-40       1     170 [.      32     208 ..      32     213 .. 0.88

  Alignments for each domain:
  == domain 1  score: 138.7 bits;  conditional E-value: 5.5e-44
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.ST....SEEEEEET..TSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx....xxxxxxxx..xxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet......kgktgpkalivePtreLaeqtlnnlkkfkky.id....lrvlliig..gva 86 
                 t++Qa++ip + +++dv+v+  TGsGKT af+ipvl++++++       +k +   li++PtreLa+qt   + +f+k+  d    ++++l++g  +++
  CCD24289.1  32 TPVQASTIPMFSQNKDVVVESVTGSGKTVAFVIPVLERIISEgankksFKKGHFHSLIISPTRELAKQTKIVIDEFLKQyPDdmypIKAQLLVGtnENT 130
                 89*************************************9999*998779999*************************523356666666666643444 PP

                 HHHHH.HHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  87 ardql.skldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                  rd++ + l+n+++i+vgtpgrl+d+l+  ++++s++ ++++DEadrlld +f +++++il+ l       ++qr++ ++SAT++
  CCD24289.1 131 VRDDVnDFLENKPQILVGTPGRLLDFLQMTSVKTSSCGMVIIDEADRLLDISFVKDVEKILSVL-------PKQRRTGLFSATIS 208
                 455550556899***************99999********************************.......78999*******97 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.25   7.3e+02      17      73 ..      85     149 ..      67     151 .. 0.72
   2 !   80.6   0.0   3.2e-26   9.7e-23       2     111 .]     249     372 ..     248     372 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.25
                 SEEEEEESSHHHHHH....HHHHHHHT.....TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  17 gkilifvntidrlek....vklllekk.....gikvavlhgelpqnereeileqfnkgesdvLiat 73 
                   +li+++t++ +++    ++ +l++       ik+  l g ++ n  ++ +++f +++ ++L+ t
  CCD24289.1  85 FHSLIISPTRELAKQtkivIDEFLKQYpddmyPIKAQLLVG-TNENTVRDDVNDFLENKPQILVGT 149
                 56789999999666633453333344467777799999999.888888888899988888899887 PP

  == domain 2  score: 80.6 bits;  conditional E-value: 3.2e-26
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHH....HHHHHHHT..........TSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEESGGGTSSSTSTTE CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlek....vklllekk..........gikvavlhgelpqnereeileqfnkgesd.vLiatdvaerGidipkv 85 
                 k+++ll+ll ++ + +k++++ +t+ ++      +++l++++          ++++  lhg+l++ +r ++l++f +  ++ vL++tdva+rGidip+v
  CCD24289.1 249 KFQYLLNLL-NNYRFKKCIVYFPTCISVTYfysfMQYLQNEFknskhpflneDLQIFSLHGKLQTASRMKTLDSFTETLTNaVLLTTDVAARGIDIPDV 346
                 78999***9.8899999999999999775455676777444455667788889***********************999999***************** PP

                 SEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  86 nlVinfdlprnvtsyiqriGRtgRag 111
                 +lV+++d+p++ + + +r GRtgRa+
  CCD24289.1 347 DLVVQLDPPTDSDIFLHRCGRTGRAN 372
                 ************************96 PP

>> DUF4217  Domain of unknown function (DUF4217)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.4   5.2e-19   1.6e-15       5      61 .]     419     475 ..     416     475 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 5.2e-19
     DUF4217   5 leslcakdrdlkelAqkAfvsyvraYsvhlakeiFrvkkLdlealAksfGLleaPki 61 
                 +++++++dr+ ++ + kAfv+++r+Ys+h+a++iFr+++L++ a++k+ GL ++P++
  CCD24289.1 419 FKKWILQDRARFDHSIKAFVAFIRYYSNHSASSIFRLQSLNYVAICKMHGLFRLPRM 475
                 789*****************************************************9 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   3.1e-11   9.2e-08      22     169 ..      43     207 ..      18     209 .. 0.78
   2 ?   -2.9   1.2       1.9   5.8e+03      61      61 ..     564     564 ..     508     606 .. 0.52

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 3.1e-11
                 .TTSEEEEEESTTSTHHHHH.HHHHHHH-S.............-EEEEESSHHHHHHHH...HHGGGGTGG.............GEEEESSS-B--... CS
      ResIII  22 krdkrglikmaTGtGKTlva.aklierllkkgkee........kflflvprkslleqtl...eefkkflseayke.........igkkvsgdkkkakek 99 
                  ++k ++++  TG+GKT+   + + er+ ++g ++        + l++ p+++l +qt+   +ef k ++++            +++ v++d ++    
  CCD24289.1  43 SQNKDVVVESVTGSGKTVAFvIPVLERIISEGANKksfkkghfHSLIISPTRELAKQTKiviDEFLKQYPDDMYPikaqllvgtNENTVRDDVND---F 138
                 68999*************99899999999999988999*********************777777777776666675555544333334444444...4 PP

                 ....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---SEEEE.EESS- CS
      ResIII 100 dstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfkeavllg.lTATp 169
                  +++ +ilv t  +l   +     + ++ + ++  ++iiDEa rl +    k +++il  ++++ + g ++AT+
  CCD24289.1 139 LENKPQILVGTPGRLLDFL-----QMTSVKTSSCGMVIIDEADRLLDIsfvKDVEKILSVLPKQRRTGlFSATI 207
                 89999**************.....77778888888**********99744447777777777777666457776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.9
                 E CS
      ResIII  61 v 61 
                 +
  CCD24289.1 564 I 564
                 1 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.4e-06     0.007      79     137 ..     300     358 ..     295     394 .. 0.77
   2 ?   -3.2   2.5       1.3   3.9e+03     217     217 ..     544     544 ..     503     600 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.4e-06
  ERCC3_RAD25_C  79 klkkpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgs 137
                     l+   ++G+ ++a r+k l++f ++ +  +++   v+   iD+P+   ++q++  + s
     CCD24289.1 300 DLQIFSLHGKLQTASRMKTLDSFTETLTNAVLLTTDVAARGIDIPDVDLVVQLDPPTDS 358
                    56677799*****************9999999999*****************8765444 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.3
  ERCC3_RAD25_C 217 e 217
                     
     CCD24289.1 544 A 544
                    1 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00016      0.49      48     109 ..     126     188 ..      48     206 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
      AAA_22  48 psstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqh.lr.s..eeal 109
                 +++++ +d  +++l++  + l +   +  +ll+ l+  + +++  +++iiDEa++ l+ s  +++ 
  CCD24289.1 126 TNENTVRDDVNDFLENKPQILVG---TPGRLLDFLQMTSVKTSSCGMVIIDEADRlLDiSfvKDVE 188
                 34445555555555555555555...777777777766666666788********55464533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1749  (0.0975515); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 4366.61
//
Query:       CCD24290.1  [L=207]
Description: hypothetical protein NDAI_0C06310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0014   18.0   0.2     0.0019   17.6   0.2    1.1  1  DUF4498   Domain of unknown function (DUF4498)
      0.004   16.0   0.2     0.0047   15.8   0.2    1.1  1  DUF2207   Predicted membrane protein (DUF2207)
  ------ inclusion threshold ------
      0.027   14.3   0.1      0.042   13.7   0.1    1.3  1  RB_A      Retinoblastoma-associated protein A domain
       0.03   14.6   0.3      0.036   14.3   0.3    1.2  1  PHM7_cyt  Cytosolic domain of 10TM putative phosphate transpo


Domain annotation for each model (and alignments):
>> DUF4498  Domain of unknown function (DUF4498)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   4.3e-07    0.0019      81     150 ..      24      94 ..       3     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.3e-07
     DUF4498  81 kveveevpctvvs.msfFdkllsegivresgsivkcldevvedftisdeLrkvlldedseeyelfseedre 150
                 + ++e   ct ++ +++F+  ++ +iv + ++i++ + e  ++ t+s +L+k+l d   +++e f+++ re
  CCD24290.1  24 QGQIELCDCTILRpTKLFKAAEKRDIVDKLSKIRHSIKEIKQQSTASMKLQKALTDCKPDKIEYFNHRVRE 94 
                 5567777888886479*************************************************987774 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2     1e-06    0.0047     320     448 ..      47     179 ..      16     180 .. 0.52

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-06
     DUF2207 320 kalldlLfdkseegks.........lkeikkyakkskkkakkfkkalkkwksavkk........kergyfdkkgkkklkklsalglgliilglililla 401
                 +++            +         +keik++++       k++kal++ k +  +         +++ f  + +++  +   l  +++++++i+   +
  CCD24290.1  47 RDI------------VdklskirhsIKEIKQQST----ASMKLQKALTDCKPDKIEyfnhrvreLKQKIFLVETNSYNSRATCLQGWVVWIFTIMKYCS 129
                 333............2342222222444444444....4444444444444333335665777655555555554444444444444444444444444 PP

     DUF2207 402 llllvll....lvfllilllillliaiivlllfsrllgrrteeGaellakw 448
                 +++++++    +  l ++ lil+l+a++v +l+ +++ r  +e+++ + k+
  CCD24290.1 130 MIAIIPAgvigFLQLKVIYLILILVAAVVGILS-KVIIRQQPEYTQRYLKC 179
                 444444433355555555555555555555555.44444488888888876 PP

>> RB_A  Retinoblastoma-associated protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   9.4e-06     0.042       7      59 ..      50     104 ..      45     122 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.4e-06
        RB_A   7 vetvsqLrellsslsdep..sekLlelfksctedpteeiekrvkelsekflkkya 59 
                 v+++s++r  +++ +++   s kL++ +++c+ d +e  ++rv+el++k+    +
  CCD24290.1  50 VDKLSKIRHSIKEIKQQStaSMKLQKALTDCKPDKIEYFNHRVRELKQKIFLVET 104
                 6778999999999986554599**************************9865333 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.3     8e-06     0.036      16     116 ..      12     105 ..       1     134 [. 0.69

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8e-06
    PHM7_cyt  16 e...eklkeffeelypgkvvesvqivrdvkkldklveerekavrkleaalskykkngkklpkkrpthklgflglkligkkvdaidyyrekleeldeeie 111
                 +   ++++++  + +++  +++++i r +k ++     + ++v kl ++ +   k+ k    ++ t  +++ +  l   k d i+y++ +++el+++i 
  CCD24290.1  12 NpagDDIDNYQAQGQIE--LCDCTILRPTKLFKAAE--KRDIVDKLSKIRHSI-KEIK----QQSTASMKLQK-ALTDCKPDKIEYFNHRVRELKQKIF 100
                 34557777777777666..67888888876665543..456999999997544.4333....34455555444.4778899****************97 PP

    PHM7_cyt 112 eerek 116
                   +++
  CCD24290.1 101 LVETN 105
                 65554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1809  (0.100898); expected 358.6 (0.02)
Passed bias filter:                      825  (0.0460148); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 1731.48
//
Query:       CCD24291.1  [L=328]
Description: hypothetical protein NDAI_0C06320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2517.17
//
Query:       CCD24292.1  [L=355]
Description: hypothetical protein NDAI_0C06330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2849.28
//
Query:       CCD24293.1  [L=319]
Description: hypothetical protein NDAI_0C06340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2527.67
//
Query:       CCD24294.1  [L=440]
Description: hypothetical protein NDAI_0C06350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3478.11
//
Query:       CCD24295.1  [L=175]
Description: hypothetical protein NDAI_0C06360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-38  130.6   6.9    7.1e-38  130.3   6.9    1.0  1  DUF2781   Protein of unknown function (DUF2781)


Domain annotation for each model (and alignments):
>> DUF2781  Protein of unknown function (DUF2781)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   6.9   3.9e-42   7.1e-38       3     142 ..      21     174 ..      20     175 .] 0.94

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 3.9e-42
     DUF2781   3 vyllyflihipitllvDlqvllpaslfphflsklrewyiatnnDpllleppaWfksfvllelffqlPlffiavyaLlkk........ekpwlrllllvY 93 
                 ++++yflihipit+++D++v++p++++    s++++w+i++nnD+ll+e+p W+k++v++el+ qlPlff+++ +L +k         +++l+ +l+ Y
  CCD24295.1  21 FFWYYFLIHIPITIFIDASVIIPSNWQ--VGSTIVSWHIQQNNDFLLWEKPLWLKICVFFELVSQLPLFFYFLKRLNEKyyenarliDRKRLNKWLFRY 117
                 899***********************8..6677*******************************************933555667788999******** PP

     DUF2781  94 gvhaatttlaciaellsegeavase........sekqklkllalylpylliPlllav 142
                 g+ a+ tt+ c++e+ ++g++++          s+++klkl+++ylp++liPl+l++
  CCD24295.1 118 GLIASATTFYCLYEIAKRGHYPFLGsdetlvplSNADKLKLIGVYLPTFLIPLRLLL 174
                 ********************9998899**************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1397.31
//
Query:       CCD24296.1  [L=415]
Description: hypothetical protein NDAI_0C06370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-15   57.1   0.1    1.8e-14   54.1   0.1    2.1  1  DAO             FAD dependent oxidoreductase
  ------ inclusion threshold ------
      0.086   12.5   0.0       0.17   11.6   0.0    1.5  1  ApbA            Ketopantoate reductase PanE/ApbA
       0.13   11.8   0.0       0.28   10.8   0.0    1.5  1  SH3_6           SH3 domain (SH3b1 type)
       0.17   11.4   0.0       0.33   10.5   0.0    1.4  1  UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family,


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.1     4e-18   1.8e-14       2     349 ..      24     410 ..      23     413 .. 0.63

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 4e-18
                 EEEECTSHHHHHHHHHH........HHTT...........EEEEESSSSTT.SSGGGSSEEEEESSS.STHHSTH.........HHHHHHHHHHHHHHH CS
         DAO   2 vviiGGGiiGlstAyeL........arrg...........Vtllekgdiag.sgaSgrnsgllhsgl.rylpeas.........elarlslealeelre 70 
                 v+i+G+G+iGl++ y+L        +  +            t++ ++ ++  s  S++ +  +++++ r +p  +         +    ++ ++ +++e
  CCD24296.1  24 VCIVGAGVIGLTIGYQLlsklsettT--NdknkkkfklkqLTIIASN-FPKdSPISHHYTSPWAGAHfRPFP--HrpetfqqdqRESNYTRITYGFFQE 117
                 9****************666555431..1334566888899999999.544356777777777666653333..2334555655444666666677777 PP

                 HHHHHSST.TSEEEEEEEEEESSHHHHHHHHHHHHHH.....HHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EE CS
         DAO  71 leeelgid.idyrrtGllslaadeeelealdkllall.....leagldaelldaeevrelepalpgllgalfypdtgqvdpakltaalaraaealGvei 163
                 l ++ +++ +   ++G+ +l+  +  le+++   + +     +   l+ + + +    +  p  +g++ +  y +  ++++ k++ +l++++e+ +   
  CCD24296.1 118 LVKN-HPEsTIEFMKGVDWLENPP--LEYSKF--GPGycntpT-SKLEFKPIPK----DQLP--RGVTFGAEYLT-YCLNAPKYLLFLQNQMESIA--K 201
                 7776.4552334458888886332..444421..211222221.1222223333....2333..48887777777.99************987653..3 PP

                 EESECEEEEEEEE..TCEEEEEEECTEEEE.......EEEEEEE--GGGHHHHHTT.CTT..TSEEEEEEEEEEEE.EECCTHSTGSGCSEEEEEEEET CS
         DAO 164 legtevtgleeed..gkvwgverttpgend.......aadavVnaaGawsdllgll.kel..dlpispvrgqvlvl.kplseklvspaailpvpetddd 249
                  +g +++ ++ +d  + ++++ r    e+        + + + na+G + + ++ +  ++  d++ +p+rgq l l  p ++   +  a  ++   + d
  CCD24296.1 202 KLGIKIEWIRPDDplKSLKEL-R----EKYllpmsldT-NVIFNATGQGLQYINDCnSTImyDPKSYPIRGQTLLLnVPNPNHIKF--AKKTITHQSAD 292
                 334455555333244344444.2....11123443323.66******9988774444333689999**********3333333333..33333338889 PP

                 TTTEEEEEETTS.......EEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGGG......CGEEEEEEEEEEE.TTSSEEEEEEE......TEE.E CS
         DAO 250 grgvyvtprkdg.......rvlvGgtadeesgdddpevdeedidellealrklfPql......gdvlrkwaGlrpl.pdglpligetp......gvk.g 327
                 g  ++v+ r+++       + ++Ggt   + + +d++++e d  +lle++r lfP+l       d+++  +Glrp    g  ++ et         +  
  CCD24296.1 293 GLWTFVIKRPSNdpemeapQYILGGTK--QPNVNDVDISEGDTKALLERARVLFPELlfpndeFDIVKVNVGLRPArEGGSRIVLETIpthdgsS-NlK 388
                 99999999955544444446889***7..77777789*******************556764456999999****62455666655335667533.259 PP

                 EEEEEECTTTHHHHHHHHHHHH CS
         DAO 328 lylatGhsghGltlapatGkll 349
                 + +a+G +g G+ +++++++++
  CCD24296.1 389 ICHAYGLGGMGYETSIGVARHA 410
                 9******************986 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.7e-05      0.17       1      31 [.      24      54 ..      24      79 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.7e-05
                EEEES-SHHHHHHHHHHHHHTHCEEEE-SCH CS
        ApbA  1 iailGaGaiGsllaakLakagadvtlilrsr 31
                ++i+GaG iG +++++L  +  + t  ++++
  CCD24296.1 24 VCIVGAGVIGLTIGYQLLSKLSETTTNDKNK 54
                69***************99888888777777 PP

>> SH3_6  SH3 domain (SH3b1 type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.3e-05      0.28      31      43 ..     286     298 ..     285     301 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.3e-05
                 EEEE-TTSSEEEE CS
       SH3_6  31 ilhaSkDgaWlfV 43 
                 i+h+S+Dg W fV
  CCD24296.1 286 ITHQSADGLWTFV 298
                 9***********9 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.3e-05      0.33       2      37 ..      23      58 ..      22      68 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.3e-05
                    EEEEE--STTHHHHHHHHHHCTSEEEEE-S-HHHHH CS
  UDPG_MGDP_dh_N  2 kisviGlGYvGlvtaavlaeighevigvDideekvd 37
                    +++++G+G +Gl+ +  l ++  e +  D++++k +
      CCD24296.1 23 NVCIVGAGVIGLTIGYQLLSKLSETTTNDKNKKKFK 58
                    79*****************************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3262.36
//
Query:       CCD24297.1  [L=201]
Description: hypothetical protein NDAI_0C06380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-11   41.7   1.0    2.3e-10   40.3   1.0    1.8  1  WW        WW domain
  ------ inclusion threshold ------
      0.019   15.3   4.1      0.019   15.3   4.1    4.3  3  CYSTM     Cysteine-rich TM module stress tolerance
      0.045   13.8  31.6       0.37   10.8  31.6    2.3  1  DUF2076   Uncharacterized protein conserved in bacteria (DUF2
          1    7.5   5.9        1.1    7.4   5.9    1.1  1  PAT1      Topoisomerase II-associated protein PAT1


Domain annotation for each model (and alignments):
>> WW  WW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   1.0   5.2e-14   2.3e-10       1      31 []      11      41 ..      11      41 .. 0.97

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 5.2e-14
                X-TTEEEEE-TTTT-EEEEETTT--EESS-- CS
          WW  1 LPpGWeeqwdpdsGrvYYyNheTgetqWekP 31
                +P+GW++++d++++ ++Y++ +T+++qW+ P
  CCD24297.1 11 VPSGWKAIFDDEYQTWFYVDLSTKKSQWDEP 41
                59**************************988 PP

>> CYSTM  Cysteine-rich TM module stress tolerance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -25.6  38.2         4   1.8e+04      11      12 ..      82      83 ..      58     106 .. 0.50
   2 ?   15.3   4.1   4.2e-06     0.019       2      23 ..     108     127 ..     107     147 .. 0.66
   3 ?   -3.4   0.2       2.9   1.3e+04       6      23 ..     166     179 ..     165     184 .. 0.53

  Alignments for each domain:
  == domain 1  score: -25.6 bits;  conditional E-value: 4
       CYSTM 11 pv 12
                + 
  CCD24297.1 82 QS 83
                22 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 4.2e-06
       CYSTM   2 pqpgYyqqppvqeqppqkgdgG 23 
                 pqp+Yy+q+pv +qp+ + ++G
  CCD24297.1 108 PQPMYYPQQPVYQQPQ-Q-NRG 127
                 8999999877765444.4.444 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 2.9
       CYSTM   6 YyqqppvqeqppqkgdgG 23 
                 Yy+++    + + ++dgG
  CCD24297.1 166 YYNDD----NNNDNYDGG 179
                 77764....333334444 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  31.6   8.3e-05      0.37      99     224 ..      74     185 ..      32     196 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.3e-05
     DUF2076  99 kkerpqpspqarpaapagqalgqeeqyaaqpgyaq.qqaqpqygqpaaapqp..ggGggFLggAlqtAAGVaGGvllangleslfsgksgeegaasasq 194
                 ++++ +++++++p  p++q+++q+ +ya qp+ a+ ++++pq+  +++++ +  g+ +++++  +   AG  GG+ll     ++f+ ++          
  CCD24297.1  74 QQPYVPQQQSQQPYVPQQQPQPQPVRYAPQPQMAPqPMYYPQQPVYQQPQ-QnrGRTSSMMSPMMGVGAGLLGGALLS----NMFESHH---------- 157
                 22234444444444445555555555555554333344444433333333.1458999*****************975....5677755.......... PP

     DUF2076 195 saeeeeiinnyy.ssssladdaedadnasad 224
                     ++i++n+y ++++++d+++  d ++ d
  CCD24297.1 158 ---PDTIVENNYyNDDNNNDNYDGGDFGGGD 185
                 ...3556655553555555555555555544 PP

>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   5.9   0.00024       1.1     272     346 ..      57     129 ..       3     166 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00024
        PAT1 272 gkpvtilqrpqskqakpaepsasseaqe...akqqappakvqptqilqnpnrlaarlelsqkeqaaaqaapeqeakrq 346
                   p+    r++ +q+++++p + +++++     qq+p  + qp++   +p++ ++ + ++q++++++ ++++    r+
  CCD24297.1  57 PPPPPGYSRQDPSQTRSQQPYVPQQQSQqpyVPQQQP--QPQPVRYAPQPQMAPQPMYYPQQPVYQQPQQNR---GRT 129
                 2244444444444444444443333322121222222..235666666666665555555555444333332...222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 1584.90
//
Query:       CCD24298.1  [L=377]
Description: hypothetical protein NDAI_0C06390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.34   10.9   0.1       0.34   10.9   0.1    2.9  2  Microtub_bd  Microtubule binding
        5.6    7.5  14.8       0.75   10.3  10.7    1.6  2  APG6_N       Apg6 coiled-coil region


Domain annotation for each model (and alignments):
>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.7e-05      0.34      46     100 ..     168     222 ..     140     244 .. 0.80
   2 ?    2.0   0.6      0.02   1.8e+02     107     145 ..     251     290 ..     241     295 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.7e-05
                  .TTTEEEE-SEEEECTTHCCCCCCCCHHHHHHHHTT--EEEEEEES......... CS
  Microtub_bd  46 kkkkkefsFdrvfeseseqeevfeeisqlvqsaldgynvcifaygqTGsGKtyTm 100
                  +k + + +F+r++e + +q  ++ e++++ +s+l+  n+ i++++   s   y +
   CCD24298.1 168 NKMTIDLRFNRMVEDSLKQFTLTIELKYYSNSSLEIENYDILSISPHDSPVLYKI 222
                  55566789**********************************9987666555555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.02
                  .ST-HCHHHHHHHHHHCC.TSCCCCEEEEEEEEEEESS-E CS
  Microtub_bd 107 agmipraveeifetisel.kekgwkyeielqfveiynekv 145
                  ++ ++++++ei +t+++  ++++ + +i++++v  yn+ +
   CCD24298.1 251 NEILQSIIKEIKSTSTNDiQSTEDENKIRFNMVRTYNDVI 290
                  556677777776665544155888999**********944 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  10.7   8.4e-05      0.75      43     101 ..      52     110 ..      20     133 .. 0.65
   2 ?   -3.3   0.1       1.4   1.2e+04      30      42 ..     256     268 ..     243     279 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 8.4e-05
      APG6_N  43 ekqdeeleeleeeleklekeeeelleeLkelekere.eleaelaaleeelealeeeeerf 101
                 +++d ++ +l+ee e+l +e+++ll+e+kele++++ ++  ++ +    +e  eee +  
  CCD24298.1  52 NEEDLKRFKLQEEKEQLLNERNTLLQEIKELEEKKRnDISHAIDKDITDEEG-EEETNSN 110
                 2256677799*********************976641555555444444333.3333334 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.4
      APG6_N  30 eflkklkkekkee 42 
                 +  k++k++++++
  CCD24298.1 256 SIIKEIKSTSTND 268
                 3444444443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1729  (0.0964359); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2776.93
//
Query:       CCD24299.1  [L=493]
Description: hypothetical protein NDAI_0C06400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-66  223.3   5.2    4.4e-66  223.1   4.5    1.4  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    6.6e-43  145.5   0.1    1.7e-42  144.1   0.1    1.8  1  Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase,
    4.2e-20   72.1   5.3      3e-17   63.0   1.0    2.9  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    7.6e-12   45.3   2.1    2.3e-09   37.2   0.1    2.6  2  FAD_oxidored   FAD dependent oxidoreductase
    2.4e-10   40.5   3.1    1.5e-05   25.1   0.8    2.5  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    4.6e-09   35.8   5.8    7.3e-09   35.2   1.4    2.3  2  GIDA           Glucose inhibited division protein A
      5e-09   35.8   8.7    3.7e-06   26.4   0.7    2.5  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    1.6e-06   27.5   1.2    1.6e-06   27.5   1.2    2.6  3  FAD_binding_2  FAD binding domain
      1e-05   24.5  11.3    0.00031   19.6   0.9    4.0  4  HI0933_like    HI0933-like protein
    5.8e-05   22.5   1.1       0.19   11.0   0.3    2.6  2  AlaDh_PNT_C    Alanine dehydrogenase/PNT, C-terminal domain
     0.0003   20.1   6.2      0.023   13.9   0.4    3.3  2  FAD_binding_3  FAD binding domain
    0.00061   19.5  10.7       0.12   11.9   0.0    3.9  4  DAO            FAD dependent oxidoreductase
    0.00089   18.6   1.0     0.0073   15.6   0.0    2.2  2  Thi4           Thi4 family
     0.0017   17.6   0.4        2.3    7.3   0.0    3.0  3  K_oxygenase    L-lysine 6-monooxygenase (NADPH-requiring)
  ------ inclusion threshold ------
      0.019   14.3   0.2      0.073   12.4   0.2    2.1  2  THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase,
        0.8    9.6   3.8         18    5.3   0.2    3.9  4  DUF4479        Domain of unknown function (DUF4479)
        2.1    8.2   7.0       0.15   12.0   0.7    2.3  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.1   4.5   4.2e-69   4.4e-66       1     294 []      25     355 ..      25     355 .. 0.96
   2 ?   -2.9   0.0         3   3.2e+03     220     257 ..     388     423 ..     378     431 .. 0.62

  Alignments for each domain:
  == domain 1  score: 223.1 bits;  conditional E-value: 4.2e-69
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE....TTHCHHHCSHHHHCHHHHHHHHHHHHH..........................HHHHCHHHHCC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx..........................xxxxxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve....legtclnggcllskallgvaedaeias..........................evvkklnqgie 68 
                  +d+v+iGgGp+G+ aa+++aq g++++++e    l+gtcln+gc++skall+ +  +++++                          +vv++l+ g+e
   CCD24299.1  25 HDIVIIGGGPGGYVAAIKAAQLGFDTACIEkrgkLGGTCLNVGCIPSKALLNNSLMYHQMQhdskqrgidiegqvklnidtfqkakdKVVNQLTGGVE 122
                  59***************************99999**************************************************************** PP

                  CCHCCTCEEEEESCEEEEETEEEC...........TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  69 lllgeevvkidpgkkkvklekkke...........gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGv 155
                  +l ++++v++++g++ ++ e+ ++           ++   ++++++++AtGs+   +  pG    +++  r++ s+ al+lk+ pkr++++GgG iG+
   CCD24299.1 123 MLFKKNKVTYYKGNGSFENENVVKvspveglegsvKEDVLLDAKNIIIATGSEVTPF--PGI---TIDEERIVSSTGALSLKEIPKRLAIIGGGIIGL 215
                  *******************99999*********9877788999********988777..999...77778**************************** PP

                  HHHHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCE..EEESEEEE-S-EEES-HHCS.HCCT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx..xxxxxxxxxxxxxxxxxxxx.xxxx RF
  Pyr_redox_2 156 ElAaalaklgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngekle.vvledgee..idadlvvvavGvrpstelle.eklg 249
                  E+ +++++lg+++t++e  d++  ++d e++  +++ l+k+G ++kl t+v  ++++g+ ++ vv+++g++  i+ad ++vavG+rp  e+l+ eklg
   CCD24299.1 216 EMGSVYNRLGSKTTVLEFQDQIGASMDGEVASSIQKILKKQGMDFKLSTKVISAERKGDVVDiVVEKSGKKetIQADVLLVAVGRRPYIEGLNaEKLG 313
                  ***************************************************9999999977787777777778************************* PP

                  -EEEETTEEE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 250 lelderggivvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  l +d++g++v+d++ +t+ p+i +iGDv+    gp+la++A ++G
   CCD24299.1 314 LDVDKKGRLVIDDQFNTKFPHIKVIGDVT---FGPMLAHKAEEEG 355
                  *****************************...**********998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3
                  ETTSCEEEESEEEE-S-EEES-HHCSHCCT-EEEETTE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 220 ledgeeidadlvvvavGvrpstelleeklgleldergg 257
                   +++e+++ad + + +G  p  +    +++ ++d  g+
   CCD24299.1 388 GKTEEQLKADGIKYKIGKFPFIAN--SRAKTNMDTEGF 423
                  556666666666666666666544..455555555555 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.1   0.1   1.6e-45   1.7e-42       1     109 [.     374     482 ..     374     483 .. 0.99

  Alignments for each domain:
  == domain 1  score: 144.1 bits;  conditional E-value: 1.6e-45
                    BEEEEESSSEEEEEES-HHHHHHHHSGEEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHTSB CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagieikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedladti 96 
                    ip+v++++peva+vG+tee++ka gi++k+gkfpf an+ra+++ +t+gfvK+++da+t+++lGahi+Gp+age+i+e+ +a+++g+++ed+a+ +
     CCD24299.1 374 IPSVMYSHPEVAWVGKTEEQLKADGIKYKIGKFPFIANSRAKTNMDTEGFVKIIIDAETERLLGAHIIGPNAGEMIAEAGLALEYGASAEDIARVC 469
                    79********************************************************************************************** PP

                    SSSSSTGGGGHCH CS
  Pyr_redox_dim  97 hihPtlsealkea 109
                    h+hPtlsea+kea
     CCD24299.1 470 HAHPTLSEAFKEA 482
                    ***********97 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.2   0.00092      0.97       2      35 ..      27      60 ..      26      65 .. 0.93
   2 !   63.0   1.0   2.8e-20     3e-17       1      79 [.     204     281 ..     204     286 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00092
                EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvversdkll 35
                +v++GgG  g  +A  +a+lg ++ ++e + kl 
  CCD24299.1 27 IVIIGGGPGGYVAAIKAAQLGFDTACIEKRGKLG 60
                8****************************99987 PP

  == domain 2  score: 63.0 bits;  conditional E-value: 2.8e-20
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesvklk 79 
                 +++++GgG iglE+++++++lg+k+tv+e +d++   +D e+++ +q+ l+k+g+++ l+tkv + e ++d v  ++++
  CCD24299.1 204 RLAIIGGGIIGLEMGSVYNRLGSKTTVLEFQDQIGASMDGEVASSIQKILKKQGMDFKLSTKVISAERKGD-VVDIVVE 281
                 689****************************************************************9999.7778776 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   2.1e-12   2.3e-09       1      41 [.      26      66 ..      26     172 .. 0.88
   2 !    7.4   0.3    0.0023       2.5      83     139 ..     240     294 ..     210     299 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.1e-12
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsg 41
                  D+v++GGgp+G++AAi Aa+ G  ++ +e+rg lGG+  + 
    CCD24299.1 26 DIVIIGGGPGGYVAAIKAAQLGFDTACIEKRGKLGGTCLNV 66
                  9***********************************97665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0023
  FAD_oxidored  83 tfepevakavleemlaeagvtvllntrlvevekegkriesvtveskegrktirAkvf 139
                   +++ eva + ++++l+++g++  l t+++++e++g ++  ++ve++ +++ti+A+v 
    CCD24299.1 240 SMDGEVASS-IQKILKKQGMDFKLSTKVISAERKG-DVVDIVVEKSGKKETIQADVL 294
                   556666655.68999999****************8.9******86657******986 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.8   1.5e-08   1.5e-05       1      36 [.      29      64 ..      29      71 .. 0.96
   2 !   15.0   0.1     2e-05     0.021       1      38 [.     207     244 ..     207     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 1.5e-08
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   I+G+G +G vaA  +a+ gfd  ++ekr +lGG + 
     CCD24299.1 29 IIGGGPGGYVAAIKAAQLGFDTACIEKRGKLGGTCL 64
                   9********************************996 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2e-05
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EE CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasy 38 
                    I+G+G+ Gl + + + + g + ++le +d++G  +  +
     CCD24299.1 207 IIGGGIIGLEMGSVYNRLGSKTTVLEFQDQIGASMDGE 244
                    9*******************************888655 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   1.4   6.9e-12   7.3e-09       1     150 [.      26     174 ..      26     201 .. 0.77
   2 ?    2.4   0.2     0.061        65       3      32 ..     206     234 ..     204     256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 6.9e-12
                 CEEEE-SSHHHHHHHHHHHHTT--EEEE...ES-GGGTT--SSSSEEE-TTHHHHHHHHHHHT-SHHHH..HHHHEEEEEEESTTS-CCC-EEEEEE-H CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLi...thkldtiaelsCnpsiggiakgllvrEidalggliika..adkagiqfrilNrskGpavralraqvdr 94 
                 d+++iGgG  G+ AA++aa+lG++++ i    +  +t+++++C ps   + ++l+ +++++ ++    +    + ++++++  + k + v++l +   +
  CCD24299.1  26 DIVIIGGGPGGYVAAIKAAQLGFDTACIekrGKLGGTCLNVGCIPSKALLNNSLMYHQMQH-DSKQRGIdiEGQVKLNIDTFQKAKDKVVNQL-TGGVE 122
                 79**************************88777889************************9.6665544004555555666677788888888.44455 PP

                 HHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEE..TTS-EEEECEEEE--TT CS
        GIDA  95 elyskevteklenepnleiieeeveeliveekkvkgvvt..edgetikakavviatGt 150
                  l++k+   + +   n +  +e+v ++++    v+g+    +++  + ak+++iatG+
  CCD24299.1 123 MLFKKNKVTYYKG--NGSFENENVVKVSP----VEGLEGsvKEDVLLDAKNIIIATGS 174
                 6666665555555..77888999999988....7776541145566788899999998 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.061
                 EEE-SSHHHHHHHHHHHHTT--EEEEES-G CS
        GIDA   3 iViGgGhAGceAAlaaarlGakvlLithkl 32 
                  +iGgG  G+e      rlG k++ + +  
  CCD24299.1 206 AIIGGGIIGLEMGSVYNRLGSKTTVL-EFQ 234
                 79*********************988.333 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.8   3.8e-05     0.041       1      33 [.      28      60 ..      28      65 .. 0.83
   2 !   26.4   0.7   3.5e-09   3.7e-06     100     302 ..     140     336 ..     102     339 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.8e-05
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg.nig 33
                 +IiG+GP G  aai++ ++g++    +Ek  ++g
   CCD24299.1 28 VIIGGGPGGYVAAIKAAQLGFD-TACIEKRgKLG 60
                 7********************5.66777753666 PP

  == domain 2  score: 26.4 bits;  conditional E-value: 3.5e-09
  Pyr_redox_3 100 lfeeVesvkkedegfevetsketyeAkkviiAtGefdkPnklnipGeeklvkhyskvk.efhkyagqkvvViGgknSavDaAlelvrkgaeVtvvtrg 196
                  ++e+V +v++ ++      +   + Ak++iiAtG  +   +++i   e   +++s+   ++ k   +++++iGg+  + ++     r g++ tv+  +
   CCD24299.1 140 ENENVVKVSPVEGLEGSVKEDVLLDAKNIIIATGS-EVTPFPGITIDE-ERIVSSTGAlSL-KEIPKRLAIIGGGIIGLEMGSVYNRLGSKTTVLEFQ 234
                  6777888888655544444556899**********.777778999998.677777766255.555799*****************************9 PP

  Pyr_redox_3 197 seiekeesdpsyslkpdienrleelvkeekikvlfnaevkeikekeeeykvk.tedgkkvev.kddvvlatGykpdlsflkk..slfeldedgrpvlt 290
                  ++i ++   ++ ++   i++ l++    + +++   ++v + ++k   +++  +++gkk ++  d  ++a+G +p ++ l++   +++ d++gr v++
   CCD24299.1 235 DQIGAS---MDGEVASSIQKILKK----QGMDFKLSTKVISAERKGDVVDIVvEKSGKKETIqADVLLVAVGRRPYIEGLNAekLGLDVDKKGRLVID 325
                  988876...566666666666665....447888888888888887777544245555555515555566*********9996566677777777776 PP

  Pyr_redox_3 291 eeteetnvpglf 302
                  + +  t++p + 
   CCD24299.1 326 D-QFNTKFPHIK 336
                  5.4667777665 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   1.2   1.5e-09   1.6e-06       1      37 [.      26      62 ..      26      66 .. 0.96
   2 ?   -1.1   0.1       0.7   7.4e+02       3      33 ..     206     236 ..     204     248 .. 0.87
   3 ?    1.6   0.1      0.11   1.1e+02     151     201 ..     253     300 ..     239     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.5e-09
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGSG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgga 37
                   D+++iG+G +G++AA++aa+ G ++a++ek ++ gg+
     CCD24299.1 26 DIVIIGGGPGGYVAAIKAAQLGFDTACIEKRGKLGGT 62
                   99******************************99986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.7
                    EEE--SHHHHHHHHHHHHTTT-EEEEESSSG CS
  FAD_binding_2   3 iViGsGlAGLaAAleaaeaGlkvavvekeqe 33 
                     +iG+G+ GL  +   ++ G k++v+e  ++
     CCD24299.1 206 AIIGGGIIGLEMGSVYNRLGSKTTVLEFQDQ 236
                    79***********99******9999997665 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.11
                    HHTCTEEEEESEEEEEEEECTTEEEEEEEEETTTTCEEEEEESEEEE---- CS
  FAD_binding_2 151 arkagvdfqerteadeLivedgrvtGavvenpesgrevrirakavvlatgG 201
                    ++k g+df  +t++ +  + +g+v+ +vve  +sg++++i+a+ +++a g 
     CCD24299.1 253 LKKQGMDFKLSTKVISAER-KGDVVDIVVE--KSGKKETIQADVLLVAVGR 300
                    3444599999999999866.899999****..**********999999775 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.9   2.9e-07   0.00031       1      36 [.      25      60 ..      25      67 .. 0.93
   2 ?    0.4   0.0       0.2   2.1e+02     145     179 ..     155     189 ..     121     197 .. 0.75
   3 ?    2.9   0.1     0.034        36       2      37 ..     204     239 ..     203     243 .. 0.91
   4 !    5.8   0.3    0.0044       4.6     113     164 ..     247     300 ..     242     320 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.9e-07
                 -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS- CS
  HI0933_like  1 kdviviGgGaAGlmaAisaakrgkrVlllekakklg 36
                 +d+++iGgG+ G  aAi+aa+ g +++ +ek  klg
   CCD24299.1 25 HDIVIIGGGPGGYVAAIKAAQLGFDTACIEKRGKLG 60
                 589*****************************9998 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.2
                  EEE.TTEEEEESEEEE----SS-GGGT--SHHHHH CS
  HI0933_like 145 vktkseeeleadklvlAtGGlSiPklGstgkgykl 179
                   ++k++  l a+++++AtG++  P  G t +  ++
   CCD24299.1 155 GSVKEDVLLDAKNIIIATGSEVTPFPGITIDEERI 189
                  4556677899**********999988877666555 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.034
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgr 37 
                  ++++iGgG  Gl      ++ g+++++le ++++g 
   CCD24299.1 204 RLAIIGGGIIGLEMGSVYNRLGSKTTVLEFQDQIGA 239
                  579*********9999999**********9999985 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.0044
                  HHHHHHHHHHT-EEE-S--EEEEECETTE.EEEEE....TTEEEEESEEEE---- CS
  HI0933_like 113 dallkelkeagvklrletevksvekeedgkfrvkt.k..seeeleadklvlAtGG 164
                  + ++k lk++g++++l+t+v s+e++ d  + + + k  ++e+++ad l++A+G 
   CCD24299.1 247 SSIQKILKKQGMDFKLSTKVISAERKGDV-VDIVVeKsgKKETIQADVLLVAVGR 300
                  56678899***************998887.4444423347899*********995 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00052      0.55      29      60 ..      25      56 ..      12      65 .. 0.90
   2 !   11.0   0.3   0.00018      0.19      28      69 ..     202     243 ..     191     298 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00052
                 -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS CS
  AlaDh_PNT_C 29 akvlviGgGvaGlqAiatakglgakVtvlDvr 60
                   +++iGgG  G  A+  a++lg ++  +++r
   CCD24299.1 25 HDIVIIGGGPGGYVAAIKAAQLGFDTACIEKR 56
                 579**********************9999987 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00018
                  --EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHH CS
  AlaDh_PNT_C  28 pakvlviGgGvaGlqAiatakglgakVtvlDvrparleqles 69 
                  p +  +iGgG+ Gl+  ++ ++lg k+tvl+ + +    ++ 
   CCD24299.1 202 PKRLAIIGGGIIGLEMGSVYNRLGSKTTVLEFQDQIGASMDG 243
                  56789**************************99887766665 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.4   2.2e-05     0.023       3      34 ..      26      57 ..      24      62 .. 0.93
   2 !    6.2   1.0    0.0051       5.3       5     119 ..     206     355 ..     204     369 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.2e-05
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEESSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlvekrs 34
                   d++I+G+Gp G ++a   ++ G ++ ++ekr 
     CCD24299.1 26 DIVIIGGGPGGYVAAIKAAQLGFDTACIEKRG 57
                   789***************************96 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0051
                    EEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE..................... CS
  FAD_binding_3   5 lIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrilaegapnelmgealyne..................... 79 
                    +I+G+G  Gl  +++  + G +++++e +++      ++ + +    +l++ G++ ++  +  + e  g+++                        
     CCD24299.1 206 AIIGGGIIGLEMGSVYNRLGSKTTVLEFQDQIGASMDGE-VASSIQKILKKQGMDFKLSTKVISAERKGDVVDIVveksgkketiqadvllvavgr 300
                    588888888888888888888888888665544444444.34445577777777777666666666666666666666677777777777777666 PP

                    ........CCCC.......CEEEEEHH..CHHCST-CEE--HHHHHHHHHHHHHHHT CS
  FAD_binding_3  80 ........lsdt.......pkaradle..lesspervtvypqteleriLvehaeerg 119
                                       +k r+ ++   +++ ++++v++   + ++L+++aee+g
     CCD24299.1 301 rpyieglnA--EklgldvdKKGRLVIDdqFNTKFPHIKVIGDVTFGPMLAHKAEEEG 355
                    666444330..1444444455555555556677777788888888888888888777 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00012      0.12       1      36 [.      26      62 ..      26     108 .. 0.90
   2 ?    0.1   0.0      0.45   4.8e+02     155     205 ..     124     177 ..     114     196 .. 0.56
   3 ?    3.6   2.7     0.038        40       2      32 ..     205     237 ..     204     243 .. 0.69
   4 !    6.4   0.1    0.0056       5.9     147     201 ..     244     299 ..     236     319 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00012
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSG CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsga 36
                d+viiGGG  G  +A  +a+ g  ++ +ek+  +g g+
  CCD24299.1 26 DIVIIGGGPGGYVAAIKAAQLGfdTACIEKRGKLG-GT 62
                9******************************7777.54 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.45
                 HHHHTT-EEEES......ECEEEEEEEETCEEEEE..EECTEEEE....EEEEEEE--GGGHH CS
         DAO 155 aaealGveileg......tevtgleeedgkvwgve..rttpgend....aadavVnaaGawsd 205
                  ++++ v+ ++g      ++v++++     v g+e  + +    +     a+ +++a+G  ++
  CCD24299.1 124 LFKKNKVTYYKGngsfenENVVKVSP----VEGLEgsV-K----EdvllDAKNIIIATGSEVT 177
                 55666666666633333355555533....44443421.2....122233477****997754 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.038
                 EEEECTSHHHHHHHHHHHHTT..EEEEESSSST CS
         DAO   2 vviiGGGiiGlstAyeLarrg..Vtllekgdia 32 
                 ++iiGGGiiGl       r g  +t+le +d++
  CCD24299.1 205 LAIIGGGIIGLEMGSVYNRLGskTTVLEFQDQI 237
                 69********96665554445566666666555 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0056
                 HHHHHHHHHHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEEE..EEEEEEE--G CS
         DAO 147 kltaalaraaealGveilegtevtgleeedgkvwgverttp.gend..aadavVnaaG 201
                 +++ ++++ ++++G ++ + t+v + e++++ v  v  +++ g ++  +ad + +a G
  CCD24299.1 244 EVASSIQKILKKQGMDFKLSTKVISAERKGDVVDIV--VEKsGKKEtiQADVLLVAVG 299
                 5677888999****************8876665555..44447664134455888887 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   6.9e-06    0.0073      17      63 ..      24      69 ..       8      89 .. 0.86
   2 ?    1.0   0.4      0.19   2.1e+02      20      76 ..     205     260 ..     188     297 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.9e-06
                EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTT CS
        Thi4 17 esDvvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGql 63
                  D+vi+G+G+ G  aa   a+  ++ +a +e++  +GG     G +
  CCD24299.1 24 SHDIVIIGGGPGGYVAAIKAAQL-GFDTACIEKRGKLGGTCLNVGCI 69
                57*****************9999.**************987666655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.19
                 EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTTTTTSTTBSEEEEETTTHHH CS
        Thi4  20 vvivGaGssGLtaayylakkpdlkvailersvspGGGawlGGqlfsaivvrkpakel 76 
                 ++i+G+G  GL  + +  +  + k+++le +  +G  + +      + +++k++ ++
  CCD24299.1 205 LAIIGGGIIGLEMGSVYNRL-GSKTTVLEFQDQIGASMDGEVASSIQKILKKQGMDF 260
                 6899**********999998.99*****99999987776655444455666666665 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.41   4.3e+02       2      21 ..      24      43 ..      15      59 .. 0.65
   2 !    6.5   0.0    0.0038         4     144     205 ..     160     216 ..     127     232 .. 0.77
   3 !    7.3   0.0    0.0022       2.3     291     340 ..     254     300 ..     245     331 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.41
  K_oxygenase  2 ilDligiGiGpsnLsLaill 21
                  +D+++iG Gp     ai +
   CCD24299.1 24 SHDIVIIGGGPGGYVAAIKA 43
                 56777777777655555554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0038
  K_oxygenase 144 eeelearnlvlgvGtepk.iPevleklegkervvHsseylerkeellakkriaVvGsGqSaae 205
                     l a+n+++++G+e +  P ++  ++ +er+v s  +l+ k   + +kr+a++G+G  + e
   CCD24299.1 160 DVLLDAKNIIIATGSEVTpFPGIT--ID-EERIVSSTGALSLK---EIPKRLAIIGGGIIGLE 216
                  45678*********7644155554..44.58999999999888...689*********87766 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0022
  K_oxygenase 291 geerlrllpnrevesaeaegkgeveltlrneesgeeetlevdavvlATGY 340
                  +++ + ++ +++v sae++g+  v++ +++  sg++et+++d++++A G 
   CCD24299.1 254 KKQGMDFKLSTKVISAERKGD-VVDIVVEK--SGKKETIQADVLLVAVGR 300
                  555555666666666666665.55555544..566666666666666553 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.5   4.8e+03      71      91 ..      16      36 ..      12      41 .. 0.75
   2 ?   12.4   0.2     7e-05     0.073      72     124 ..     283     344 ..     246     352 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.5
                   CCHHHHHCCSSEEEE-SS-TT CS
  THF_DHG_CYH_C 71 kdlaeitreadivvvavGkpe 91
                   ++l+ + ++ div+++ G  +
     CCD24299.1 16 RNLSPTSKSHDIVIIGGGPGG 36
                   577778889999999877655 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 7e-05
                    CHHHHHCCSSEEEE-SS-TT-B-G...GGS.....-TT-EEEE---EEC.-TTEEE-SB-HH CS
  THF_DHG_CYH_C  72 dlaeitreadivvvavGkpelika...emv.....kegavviDvGinrv.ekgklvGDvdfe 124
                    + ++ t +ad++ vavG+   i++   e +     k+g  viD  +n+   + k++GDv+f 
     CCD24299.1 283 SGKKETIQADVLLVAVGRRPYIEGlnaEKLgldvdKKGRLVIDDQFNTKfPHIKVIGDVTFG 344
                    4678899***********9888642224446666799*****99999887999******996 PP

>> DUF4479  Domain of unknown function (DUF4479)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         3   3.1e+03      39      51 ..      93     105 ..      88     113 .. 0.73
   2 ?    0.7   0.0      0.46   4.9e+02      48      69 ..     242     263 ..     221     265 .. 0.77
   3 ?    5.3   0.2     0.017        18       7      24 ..     268     285 ..     263     288 .. 0.87
   4 ?    1.4   0.0      0.27   2.8e+02       2      27 ..     412     437 ..     411     442 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3
     DUF4479  39 legnGqveLteeq 51 
                 ++ +Gqv+L+ + 
  CCD24299.1  93 IDIEGQVKLNIDT 105
                 55569***99665 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.46
     DUF4479  48 teeqvakLnealkkaGfeeeLe 69 
                 + e    ++++lkk+G++ +L 
  CCD24299.1 242 DGEVASSIQKILKKQGMDFKLS 263
                 55667789*********99886 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.017
     DUF4479   7 kverkgdVvrIfdeetge 24 
                 + erkgdVv I+ e++g+
  CCD24299.1 268 SAERKGDVVDIVVEKSGK 285
                 679********9999986 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.27
     DUF4479   2 dreeqkverkgdVvrIfdeetgevvG 27 
                 +r++++++++g V  I+d+et++++G
  CCD24299.1 412 SRAKTNMDTEGFVKIIIDAETERLLG 437
                 578999****************9998 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       3.2   3.4e+03       2      30 ..      27      55 ..      26      59 .. 0.87
   2 ?   12.0   0.7   0.00014      0.15       2      56 ..     205     259 ..     204     297 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.2
                EEEE--SCCHHHHHHHHHHTT-EEEEE-S CS
     3HCDH_N  2 vaviGaGtmGagiaavfasagleVvlvdi 30
                + +iG G  G   a  +a+ g+++  ++ 
  CCD24299.1 27 IVIIGGGPGGYVAAIKAAQLGFDTACIEK 55
                789*****999999999999*99988875 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00014
                 EEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS- CS
     3HCDH_N   2 vaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklk 56 
                 +a+iG G++G ++ +v  + g ++++++ ++++ ++   ++++s++k  +k+ ++
  CCD24299.1 205 LAIIGGGIIGLEMGSVYNRLGSKTTVLEFQDQIGASMDGEVASSIQKILKKQGMD 259
                 69*********************************************99999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 3553.68
//
Query:       CCD24300.1  [L=245]
Description: hypothetical protein NDAI_0C06410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-33  114.1   1.5      3e-33  114.1   1.5    2.5  3  Fcf2      Fcf2 pre-rRNA processing
  ------ inclusion threshold ------
       0.62   10.5   9.6      0.047   14.2   4.2    2.0  2  RED_C     RED-like protein C-terminal region


Domain annotation for each model (and alignments):
>> Fcf2  Fcf2 pre-rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.12   1.1e+03      20      41 ..      86     107 ..      63     126 .. 0.42
   2 !  114.1   1.5   3.3e-37     3e-33       5      96 .]     128     219 ..     124     219 .. 0.97
   3 ?   -3.1   0.5       1.2   1.1e+04      29      45 ..     224     240 ..     222     244 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.12
        Fcf2  20 elkrdlqlLklrnvldpkrfyK 41 
                 +l++ +  L  +++   ++  K
  CCD24300.1  86 KLENGFDSLATKKASTIEKEKK 107
                 3333333333333333332222 PP

  == domain 2  score: 114.1 bits;  conditional E-value: 3.3e-37
        Fcf2   5 agkkWfnlpkte..ltpelkrdlqlLklrnvldpkrfyKkedkkkklPkyfqvGtivegetefysarltrkerkrtlveellkdeeakkyakrK 96 
                 ++++Wf+lpk++  +  el+rdl lL++r++ldpkr+yKk+  ++++P++f+vGti+++++efys+rlt+kerk+t++e+l+ d++++ky+krK
  CCD24300.1 128 TKNDWFTLPKPDdnMRRELQRDLVLLQHRAALDPKRHYKKD--RWQIPDRFAVGTIIDNKAEFYSSRLTNKERKSTMLETLMGDDTTNKYFKRK 219
                 789********9999**************************..9*************************************************9 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.2
        Fcf2  29 klrnvldpkrfyKkedk 45 
                 + ++   +k ++Kk ++
  CCD24300.1 224 QVQKTSGKKGHFKKMKS 240
                 55566667778887754 PP

>> RED_C  RED-like protein C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   4.2   5.2e-06     0.047      12      94 ..      39     121 ..      30     134 .. 0.81
   2 ?   -2.1   0.2      0.59   5.3e+03      93      93 ..     223     223 ..     182     244 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.2e-06
       RED_C  12 vdalvdsddeadyskmdlgnkkgpvgrwdfdteeeyseymekkealPkaafqyGvkmadgrktrkkkekdekakldrelqkie 94 
                 v a +d d+e d+sk  l+   g  gr   dte e+++  ++   lPk    +    ++   t  k++k+e++ l ++ qk +
  CCD24300.1  39 VTAGDDDDEENDFSKNVLQFDDGEKGRKIVDTEKEFANIEKNLRNLPKLENGFDSLATKKASTIEKEKKNEQTGLIQDKQKNN 121
                 4566789999**************************************98877776666666667777888888877666644 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.59
       RED_C  93 i 93 
                 i
  CCD24300.1 223 I 223
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1341  (0.074795); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1917.26
//
Query:       CCD24301.1  [L=689]
Description: hypothetical protein NDAI_0C06420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-05   25.5   2.2        4.9    8.2   0.0    5.9  7  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.034     6e+02      12      38 .]     251     277 ..     241     277 .. 0.80
   2 ?   -2.8   0.0       0.8   1.4e+04      12      31 ..     336     355 ..     331     358 .. 0.78
   3 !    8.2   0.0   0.00027       4.9       8      38 .]     379     410 ..     369     410 .. 0.81
   4 !    5.2   0.1    0.0024        44      25      38 .]     524     537 ..     511     537 .. 0.77
   5 ?   -0.4   0.0      0.14   2.5e+03      14      29 ..     557     574 ..     549     580 .. 0.78
   6 ?   -1.9   0.0      0.41   7.3e+03      11      32 ..     604     622 ..     596     627 .. 0.58
   7 ?    3.1   0.1     0.011     2e+02       5      29 ..     642     668 ..     638     676 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.034
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 +v++l +s+  ++l+ G+ Dg +r +d
  CCD24301.1 251 DVNALTVSKGLKYLFLGGNDGYIRKYD 277
                 5888889999999865888****9665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.8
                 SEEEEEEETTSSEEEEE.ETT CS
        WD40  12 svtslafspdgawlasG.sdD 31 
                 +v+sla+ ++  +l+sG s +
  CCD24301.1 336 PVYSLAVESECMFLLSGlS-N 355
                 6889998888889999855.4 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00027
                 ESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGHss.vtslafspdgawlasGsdDgtvriWd 38 
                  GHs+ v+ l+ + + + ++sGs+D+++  Wd
  CCD24301.1 379 QGHSNvVNILKMNGEENRFISGSWDKKILEWD 410
                 49966468888888888889********9998 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.0024
                 EEEEETTSEEEEEE CS
        WD40  25 lasGsdDgtvriWd 38 
                 +++++ +g+++iWd
  CCD24301.1 524 FMTSGLNGSIHIWD 537
                 455666*******9 PP

  == domain 5  score: -0.4 bits;  conditional E-value: 0.14
                 EEEE..EETTSSEEEEEE CS
        WD40  14 tsla..fspdgawlasGs 29 
                 ++l+  ++ dg+ + +G 
  CCD24301.1 557 WCLSacWNVDGDHIYAGR 574
                 566666999***999885 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 0.41
                 SSEEEEEEETTSSEEEEEETTS CS
        WD40  11 ssvtslafspdgawlasGsdDg 32 
                 s+v+++  + ++++l+ +s+D+
  CCD24301.1 604 SNVYAM--PNNKQLLV-ASRDN 622
                 445555..55666666.67564 PP

  == domain 7  score: 3.1 bits;  conditional E-value: 0.011
                 EEEESS..SSEEEEEEETTSSEEEEEE CS
        WD40   5 rtltGH..ssvtslafspdgawlasGs 29 
                  +  GH  +s++ l ++p  ++l+s s
  CCD24301.1 642 LIVPGHhgGSISNLYVDPTCRFLISTS 668
                 5677998666************98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1410  (0.0786435); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                        76  (0.00423894); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.56u 0.34s 00:00:01.90 Elapsed: 00:00:00.50
# Mc/sec: 4153.21
//
Query:       CCD24302.1  [L=367]
Description: hypothetical protein NDAI_0C06430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-21   77.5  16.2    1.2e-21   77.5  16.2    2.1  2  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.8     0.074   1.3e+03      67      93 ..     102     128 ..      77     175 .. 0.63
   2 !   77.5  16.2   6.6e-26   1.2e-21       3     132 ..     190     314 ..     188     315 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.074
  FA_hydroxylase  67 gplsalllvlvlaallelliHsglhvs 93 
                      ++  lll++++a + +l+++ ++ ++
      CCD24302.1 102 VTIFGLLLYFSMASMSYLFVFDKTIFN 128
                     222333334444444444444443333 PP

  == domain 2  score: 77.5 bits;  conditional E-value: 6.6e-26
  FA_hydroxylase   3 lallledfveYwvHrllHrvkllwrrlHkvHHsseaptalaalrahplealllallllllllllg.plsalllvlvlaallelliHsglhvslgw 96 
                      +++++d++ Y++Hr+lH+++ +++ lHk HH+    t++a++++hp++   + l + l  ++l+ +  ++ll++++ ++++++iH g h+s   
      CCD24302.1 190 SFIFFTDCGIYLCHRWLHWPR-IYKALHKPHHKWLVCTPFASHSFHPVDGYAQSLSYHLYPIILPlNKLTYLLLFTFVNFWTVMIHDGNHMSN-- 281
                     68999*************977.9999****************************66665555555599999*****************54444.. PP

  FA_hydroxylase  97 llerllatpraHrlHHskneegnfgvllslwDrlfg 132
                       + ++++++ H +HH +++ +n+g++++lwDrl g
      CCD24302.1 282 --NAIVNGTACHTVHHLYFN-YNYGQFTTLWDRLGG 314
                     ..4568**************.************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2851.24
//
Query:       CCD24303.1  [L=68]
Description: hypothetical protein NDAI_0C06440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   12.1   0.0       0.17   12.0   0.0    1.2  1  DUF4306   Domain of unknown function (DUF4306)


Domain annotation for each model (and alignments):
>> DUF4306  Domain of unknown function (DUF4306)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   9.6e-06      0.17      18      63 ..      22      67 ..       5      68 .] 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.6e-06
     DUF4306 18 awyegsellskekeWkktakftkllkgsvedekqisqlDflvYaak 63
                a+++  e +s+  +Wkk+  + k+   ++++ ++  +l++ +Y+ k
  CCD24303.1 22 ASHQLVETVSDGIDWKKQCLLQKKEIDTIKELNKFLELERKIYSGK 67
                556667889999************888****************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 523.87
//
Query:       CCD24304.1  [L=882]
Description: hypothetical protein NDAI_0C06450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-76  256.7   0.0    8.9e-76  255.6   0.0    1.5  1  Glyco_hydro_47  Glycosyl hydrolase family 47
  ------ inclusion threshold ------
       0.13   11.8   0.0        3.1    7.2   0.0    2.3  2  Glyco_hydro_76  Glycosyl hydrolase family 76


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.6   0.0   9.9e-80   8.9e-76      14     458 .]     232     876 ..     229     876 .. 0.90

  Alignments for each domain:
  == domain 1  score: 255.6 bits;  conditional E-value: 9.9e-80
                     TTSSEEETTTTEEE-SS.SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC----S.SS...EEEHHHHHHHHHHHHHHHHHHH.S-HHHHHHHHH CS
  Glyco_hydro_47  14 wghDelrPlskkgrdtfgglgatlvDsLdtllimglkeefeeaveavekkidfdtsds..kevsvFEttIRyLGGLlsaydlsekkedvllekAv 106
                     w+++ l  l k+ ++    + + l+DsLdtl+im+ k+ f+ea++ ++ + df+  ++  + v++ +   R +GGLlsay+ls  +++vll+kA+
      CCD24304.1 232 WKQNDLIKLAKREKNK--RWPIDLIDSLDTLYIMDQKDLFQEALDIIS-ETDFRIPPKavDIVNIADLSTRGVGGLLSAYELS--QNQVLLAKAK 321
                     6666666666666655..5*****************************.9999953331145799999***************..********** PP

                     HHHHHHHGGGSSTTS---SEEETTT--EE-.STCGCEEEHHHHCSSHHHHHHHHHHHT-CHHHHHHHCCHHHHHCHCC.HHHTTB-BSEEETTT- CS
  Glyco_hydro_47 107 eladrLlpAFdtpsglpvarvnlkkrkaskkerassesvlAelgslslEftrLsqlTgdkkYedlaervtkaleelqektklpglvpikidastg 201
                     ++ad +l AFdtp++lpv ++ +  ++  +++ + ++s+l +++ +slE+trLsqlT +++Y+d+++rv++ l ++ +  +++ ++p+++das++
      CCD24304.1 322 QMADFILRAFDTPNRLPVLKYSW--KSPFNNRFPYKNSTLDDITKMSLELTRLSQLTSEDNYFDAVHRVYTILTNSFNDFSMDYMFPKFVDASGC 414
                     ***********************..777788888888999***********************************889999************** PP

                     -EES..............................................TEE-SSTTTHHHHHHHHHHHHHCTS--.................. CS
  Glyco_hydro_47 202 kfva..............................................ekislgargDSyYEYllKqylllggee.................. 232
                     ++ +                                              ++  l     S++  l+K y +l+ ++                  
      CCD24304.1 415 QILTskeissgkhqknsqimrsidenlrfvhcyqskkvlpvhsndnngkgNHPDLITINRSLFDTLIKLYQQLNYHDilnlyeedigissveshe 509
                     **9779**************************************999999888888888899999999999999777888999999999999999 PP

                     .................................HHHHHHHHHHHHHHHHH.TEEE-TTT..--EEE-EECTT...........CTS.EE-EEEGG CS
  Glyco_hydro_47 233 .................................eqyrkmyeealdaikkhllfrpskkkeddllfvgevtst...........eegklspeidhL 283
                                                      ++ +++ +e  +++ +  +f+p  ++  +l ++++v ++            e  +++++d  
      CCD24304.1 510 espqkevksvykreaaavitatdskmedtlpsgPTSKTILKEFFNTVTRFFIFHPIIPNL-NLSLITSVFVKdkyvpttneleVELLRTFNVDIS 603
                     99999999999999999999999999999999999*********************9995.4444444443445667888876688899****** PP

                     GGHHHHHHHHHHHTT.-H....HHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS.........S-ECTSSSSEEE-................ CS
  Glyco_hydro_47 284 scFlgGllalgakll.ek....eedlelAkkltegcvkayeatktglmPEifevkpces....aeecewneekkdealk................ 353
                     sc lg +lal++k+  +     +++l++A++lt++c ++ + +  g mP +++++pc +    ++ c+ ne++k + +                 
      CCD24304.1 604 SCSLGSTLALNSKISaSSpkemNDQLNMARNLTKSCFQLNKFF-QGKMPISLSLDPCLDkfgkEQYCQYNEQDKINNIMnglykgddgkflhksg 697
                     ***********9999544899999***************9999.9************88787666777666655555558*************** PP

                     ........................................................................GGG--B----HHHHHHHHHHHHH CS
  Glyco_hydro_47 354 .......................................................................riedrkyllRPEaiESlfylYrit 377
                                                                                            +   +k++l P++iES+fy+Yrit
      CCD24304.1 698 sqndltikisdnkvhsnnniddenggsftkpknililstnekyrgvtsilpesinneskkwtdhpdwplwiNDMGPKQVLNPDLIESIFYMYRIT 792
                     *********************************************************************87777799****************** PP

                     --THHHHHHHHHHHHHHHHC.EETTEE--ECETTSSS-EE-S-..B-HHHHHTHHHHHHHHC-S-TTT-TTTEEE-TTS-EEE- CS
  Glyco_hydro_47 378 gdekyrevgwemfealekat.ktesgysaledVtkeepekeDe..meSFwlaEtlKYlYLlFsdedvlsldeyVfnTeAHplkr 458
                     gd ++re+g + fe + k   +t+ g ++l  + + ++  +De      w+++tlKY+ LlF   d+ sld+yVf+  +H lkr
      CCD24304.1 793 GDAEWREMGHDLFETVLKVLkETNVGAKGLWHISELKGDDSDEptVPNHWISKTLKYFHLLFGSADKYSLDDYVFSESGHLLKR 876
                     *****************9883568899999999998777777533899*********************************986 PP

>> Glyco_hydro_76  Glycosyl hydrolase family 76
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.015   1.4e+02     100     184 ..     308     390 ..     297     403 .. 0.76
   2 ?    7.2   0.0   0.00035       3.1     225     256 ..     782     813 ..     781     827 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.015
                     HHH.....H--HHHHHHHHHHHHHHHHCB-SCSCCS-BBSEC...ESS--SEEEHH...HHHHHHHHHHHHHHHH--CHHHHHHHHHHH CS
  Glyco_hydro_76 100 aernfpeptdepswLalAqavfntqasrwdeetcgGGlrWqi.ftwnsgydyknsi...sngplfqlaarLarytgnetYlewAekvwd 184
                     +e      ++++  La A+++ +++ + +d+ +    l+++  +++n+   ykns     + ++++l  rL + t +++Y +   +v+ 
      CCD24304.1 308 YEL-----SQNQVLLAKAKQMADFILRAFDTPNRLPVLKYSWkSPFNNRFPYKNSTlddITKMSLELT-RLSQLTSEDNYFDAVHRVYT 390
                     554.....5666778888888888888888877666666554469*********98444567777777.9999999****999888875 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00035
                     HHHHHHHHHHH--HHHHHHHHHHHHHHHHHCE CS
  Glyco_hydro_76 225 lsgaaylynaTgdekWldrvkgllnatlstff 256
                     +++  y+y++Tgd++W++  ++l +++l+++ 
      CCD24304.1 782 IESIFYMYRITGDAEWREMGHDLFETVLKVLK 813
                     56788****************99999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 6057.38
//
Query:       CCD24305.1  [L=348]
Description: hypothetical protein NDAI_0C06460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-32  113.4   1.7    4.2e-32  112.0   0.6    2.1  2  RNase_T    Exonuclease
  ------ inclusion threshold ------
      0.054   13.1   0.4        0.1   12.2   0.4    1.4  1  DUF2026    Protein of unknown function (DUF2026)
       0.12   12.6   0.1       0.21   11.8   0.1    1.4  1  DUF4148    Domain of unknown function (DUF4148)
        2.8    8.1   5.8        3.9    7.6   2.1    2.6  2  TetR_C_23  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.6   9.5e-36   4.2e-32       1     164 [.     111     278 ..     111     279 .. 0.96
   2 ?   -0.3   0.0      0.31   1.4e+03     120     150 ..     293     324 ..     289     327 .. 0.85

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 9.5e-36
                 EEEEEEESSSTTCTTS-EEEEEEEEEETTCC......EEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHHHHTCCCETT.T CS
     RNase_T   1 vviDlEttgldakekdeiieiaaisidggen......eigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellrklallvahn.a 92 
                 v+iD+E+tgld+   d+iiei++i++dg++       +  ++ +++++ + +++++++c++ +g +++++++ +s+k+  + ++ell ++++++++  +
  CCD24305.1 111 VWIDCEMTGLDH-TSDRIIEICCIITDGNLKivdkegDNCYESVIHYDSKVMDNMNEWCIDQHGKSGLTAKVLESTKTREQVEEELLAYIKKFIPDPnV 208
                 9***********.7*******************9777677789******************************************************9* PP

                 CEEEESSHHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSSTSSHHHHHHHHHHH CS
     RNase_T  93 afdvgflraadkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgraHrAldDaeatakl 164
                  + +g++ ++d++++ +e+pk  ++l ++ +d++t++e  r+++++la+ ++ +e++  H+A +D++++++ 
  CCD24305.1 209 GIMAGNSIHMDRLFMLREFPKVIKHLFYRLIDVSTIMEVSRRHNNELAQIVPRKETA--HTAKKDILESIAQ 278
                 *************************************************99999976..*********9986 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.31
                 HCECHHHHHHHHHC.HHHHHHHHHTTCHSSSS CS
     RNase_T 120 tlildkatlkelar.tsldklaeklgleedgr 150
                 t +++ a++ke  + +s+++la +l+ e+++r
  CCD24305.1 293 TKEFVAASIKEQEKeKSNTDLASVLKNEFNKR 324
                 56788889999888899999999999999886 PP

>> DUF2026  Protein of unknown function (DUF2026)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   2.3e-05       0.1     113     191 ..     259     339 ..     241     347 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.3e-05
                 ----BEEEEG.GG--SSTT---STT-EEEEE-H...HHHHHHTTTGGG-HHHHHHHHHHHHH---TTS---SEEEEE-TTS-E CS
     DUF2026 113 vpakmfqkkl.dsmaesindlkksGDffldpdl...evteellkklakslalkdlaevcaeWfrkpPkkmeasisikdadgkl 191
                 vp+k   ++  + + esi++l+   D +l+      e ++  +k+ +k++  +dla+v ++ f+k+P  +e++isi+d++ k 
  CCD24305.1 259 VPRKETAHTAkKDILESIAQLQWYQDHYLKNPNetkEFVAASIKEQEKEKSNTDLASVLKNEFNKRP--LEKDISIEDEQHKR 339
                 55555544431457899*********9997544011455667778889999**************99..78999999876543 PP

>> DUF4148  Domain of unknown function (DUF4148)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.7e-05      0.21      26      41 ..     184     199 ..     175     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
     DUF4148  26 spkTRAqVraELaqae 41 
                 s+kTR+qV +EL ++ 
  CCD24305.1 184 STKTREQVEEELLAYI 199
                 89**********8865 PP

>> TetR_C_23  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.086   3.8e+02       1      29 [.      54      82 ..      25     102 .. 0.71
   2 ?    7.6   2.1   0.00086       3.9       8      65 ..     285     344 ..     278     348 .] 0.74

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.086
   TetR_C_23  1 KllsflftflevltanRsfvlqflkkaks 29
                Kl++   +fl +l   R+f++   kk++ 
  CCD24305.1 54 KLRTSTASFLRLLPTRRDFITKYTKKNHY 82
                56666667777777777777777666554 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00086
   TetR_C_23   8 tflevltanRsfvlqflkkaksplsnlsklselrkkfkef..akelleegletkelkvrk 65 
                  +l+  ++ ++fv+ ++k++++++sn    s l+++f++    k++  e +++k++k++ 
  CCD24305.1 285 HYLKNPNETKEFVAASIKEQEKEKSNTDLASVLKNEFNKRplEKDISIEDEQHKRTKQES 344
                 5677778899**************************987511455666665555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2486.16
//
Query:       CCD24306.1  [L=120]
Description: hypothetical protein NDAI_0C06470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-39  132.6   0.5    8.1e-39  132.4   0.5    1.0  1  Ribosomal_L22e  Ribosomal L22e protein family
  ------ inclusion threshold ------
      0.071   12.6   0.0      0.075   12.5   0.0    1.2  1  GFP             Green fluorescent protein


Domain annotation for each model (and alignments):
>> Ribosomal_L22e  Ribosomal L22e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.5     9e-43   8.1e-39       2     108 ..      11     116 ..      10     119 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 9e-43
  Ribosomal_L22e   2 kklkftidcskpvedkildvaefekfLkerikvngktgnlgdkveieregkskvtvtsevkfskrylkyltkkyLkkkqlrdwlrvvasskesYe 96 
                      +++ft+d+s+p+e++++d+a+++k+L ++ikv++ tgnlg++v++e++  s vt+++++kfs++ylkyltkkyLkk+qlrdw+r+v+++ ++Y+
      CCD24306.1  11 IAKTFTVDVSSPTENGVFDPASYAKYLIDHIKVENATGNLGNAVTVEED-GSIVTIVATAKFSGKYLKYLTKKYLKKNQLRDWIRFVSTKTNQYR 104
                     5789*********************************************.579****************************************** PP

  Ribosomal_L22e  97 Lryfnieedeee 108
                     L +++++ +e+ 
      CCD24306.1 105 LAFYQVTPEEDA 116
                     ******988764 PP

>> GFP  Green fluorescent protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.3e-06     0.075      63     119 ..      26      80 ..       7     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.3e-06
                 --GGG-B--GGGG-HHHHTTTT-EEE.EEEEEETTS-EEEEEEEE.EEETTEEEEEE CS
         GFP  63 GlkqfakypddmkdffkaaveeGglswertisleddGgyktvvevskleddtlvyri 119
                 G+   a y + + d  k     G l    ++++e+dG+  t+v ++k+ +  l+y +
  CCD24306.1  26 GVFDPASYAKYLIDHIKVENATGNLG--NAVTVEEDGSIVTIVATAKFSGKYLKYLT 80 
                 56666788888999999888888887..899*******************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 880.43
//
Query:       CCD24307.1  [L=334]
Description: hypothetical protein NDAI_0C06480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.7e-94  314.0   0.5    1.1e-93  313.8   0.5    1.1  1  Methyltransf_34  Putative SAM-dependent methyltransferase
     0.0099   14.5   0.2      0.012   14.2   0.2    1.0  1  Utp14            Utp14 protein
  ------ inclusion threshold ------
      0.017   14.4   0.0        2.7    7.2   0.0    2.1  2  Rsm22            Mitochondrial small ribosomal subunit Rsm22
      0.044   13.4   2.4      0.051   13.2   0.8    1.7  2  MecA             Negative regulator of genetic competence (Me


Domain annotation for each model (and alignments):
>> Methyltransf_34  Putative SAM-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.8   0.5   2.6e-97   1.1e-93       7     306 .]      33     332 ..      27     332 .. 0.89

  Alignments for each domain:
  == domain 1  score: 313.8 bits;  conditional E-value: 2.6e-97
  Methyltransf_34   7 eelesee.....lkellqevksaLynrdfaaaFadakeelLeaYalRWspsRAlayasvlaslleveeleelleeeeekeeeekeekklkvlci 95 
                      +el++++     l + +q vks+Lynrd+ +aF+++ +++  aY++RWspsRA +y+s++a+l ev ++ +   ++ e++         +vlci
       CCD24307.1  33 DELYKSDetfekLLADVQIVKSDLYNRDYINAFNNDIKRI--AYCCRWSPSRATSYSSLFAHLDEVVHVIKC--KDMEDQ---------SVLCI 113
                      444444444444999*************************..*********************887777222..233333.........7**** PP

  Methyltransf_34  96 GGGagaElvalaallr...............e.......keeekessssslsltlvDiadWssvvkkLekaitsepllskyasaaaaanaplle 167
                      GGGag+E++a+a++++               +       ++++++s++++l+l+lvDia+W++++k+++++i++++l+ +             e
       CCD24307.1 114 GGGAGSEFIAIASMFTtsreltskyatknkdKdeddeneQDDADASRKTTLNLQLVDIANWDTIIKRINDTISDKWLYNN-------------E 194
                      ****************77777777666665505566666888899999****************************9933.............3 PP

  Methyltransf_34 168 eerlevsfkkedvLklseeelksllekkpalvtllFtlnELftesiskttkfLlrltaalkkgslLLvvdSpGsysevavgkeekkypmkfLld 261
                      +e ++v+f+++d+Lk+s++el+     + +l+tllFt+nELf+e+++++++fL++l++ +++g+lLL+v+S+Gs+s++++g+  kk+p++fL+d
       CCD24307.1 195 HEYFNVKFTENDILKMSSKELNL---PSLNLITLLFTTNELFSEHKAESIRFLQKLNSDCQSGCLLLIVESAGSFSHITIGT--KKFPIQFLID 283
                      479*************9999987...568*****************************************************..********** PP

  Methyltransf_34 262 htLlska....egkWeklesedsrwfrleeklkYpikLEnmRyqihlYr 306
                      ++L++k+    +g+We + ++ds+w+r +++l+YpikLEnmR++++lYr
       CCD24307.1 284 TVLVGKRgeerHGSWEIIAQNDSIWYRGDTSLDYPIKLENMRFFYRLYR 332
                      *******99999************************************8 PP

>> Utp14  Utp14 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   2.7e-06     0.012     307     391 ..     123     205 ..     122     238 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.7e-06
       Utp14 307 aiaeqlrrgeeLrrkiegkeededddddsdedssdseeeednseedaeeekrkkleklkeeeeke.eeeeeeepekgllamkFmkr 391
                 aia +  +++eL++k + k++d+d+dd++++d+ d +++   ++ + ++++  ++++  ++ +++ +++   ++e + +++kF ++
  CCD24307.1 123 AIASMFTTSRELTSKYATKNKDKDEDDENEQDDADASRK---TTLNLQLVDIANWDTIIKRINDTiSDKWLYNNEHEYFNVKFTEN 205
                 7999***************77777666665555554444...22334444444444444443333344444555566666666665 PP

>> Rsm22  Mitochondrial small ribosomal subunit Rsm22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0   0.00059       2.7      13      64 ..      83     136 ..      69     170 .. 0.86
   2 ?    5.3   0.0    0.0022       9.9      95     141 ..     211     262 ..     158     269 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00059
       Rsm22  13 patyavlrrvLdelae..rvpdflPkslldvgegpgtalwaaselweeleevlv 64 
                 ++ y+ l + Lde+ +  +++d   +s+l +g+g g   +a+  ++   +e+++
  CCD24307.1  83 ATSYSSLFAHLDEVVHviKCKDMEDQSVLCIGGGAGSEFIAIASMFTTSRELTS 136
                 5679*********98633679*************************99888775 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0022
       Rsm22  95 irealeleeadLviisyvLleledesrek...lvknlWakask..ilvivEe 141
                  ++ l+l + +L+++ ++ +el  e++++   ++++l   +++  +l+ivE 
  CCD24307.1 211 SSKELNLPSLNLITLLFTTNELFSEHKAEsirFLQKLNSDCQSgcLLLIVES 262
                 2345666677************998777611145555555555888899986 PP

>> MecA  Negative regulator of genetic competence (MecA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.36   1.6e+03     161     177 ..      31      46 ..      21      69 .. 0.61
   2 ?   13.2   0.8   1.1e-05     0.051      91     174 ..     119     198 ..      81     216 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.36
                 .EEEEEEE.TTEEEEEE CS
        MecA 161 yessLYkdeegrYyLll 177
                 ++++LYk+ ++++  ll
  CCD24307.1  31 FNDELYKS-DETFEKLL 46 
                 47778887.66664444 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.1e-05
                 .....XXXXXXXX...................XXXXXXXXXXXXX--SEEEEEESSHHHHHHHHT.E.....EEEEEEE.TTEEE CS
        MecA  91 skftkledlleklleelekeeeekkdkakeakekekekeeeeekeqsltrifsfdsledvirlakalkkiy.essLYkdeegrYy 174
                 s+f  + +++++ +e ++ + ++k+++++e++e+e++++++++k++ + +++ + +++++i+   ++++++ ++ LY + e++Y+
  CCD24307.1 119 SEFIAIASMFTTSRELTS-KYATKNKDKDEDDENEQDDADASRKTTLNLQLVDIANWDTIIK---RINDTIsDKWLYNN-EHEYF 198
                 445557777777776543.4444444444444444444444455555555666666666665...5554455999****.88876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1247  (0.0695521); expected 358.6 (0.02)
Passed bias filter:                      636  (0.0354733); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2452.01
//
Query:       CCD24308.1  [L=487]
Description: hypothetical protein NDAI_0C06490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-66  224.1   0.1    3.3e-66  223.2   0.1    1.5  1  Tubulin          Tubulin/FtsZ family, GTPase domain
    2.6e-42  144.0   0.2    2.2e-41  141.0   0.1    2.2  2  Tubulin_C        Tubulin C-terminal domain
    0.00096   18.9   0.0     0.0022   17.7   0.0    1.6  1  Tubulin_3        Tubulin domain
     0.0086   16.4   0.0      0.026   14.9   0.0    1.8  1  Misat_Tub_SegII  Misato Segment II tubulin-like domain
  ------ inclusion threshold ------
      0.058   12.6   0.0       0.14   11.3   0.0    1.6  1  Tubulin_2        Tubulin like
        5.4    7.6   9.7          2    9.0   5.5    2.3  3  PRESAN           Plasmodium RESA N-terminal


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.2   0.1   1.1e-69   3.3e-66       1     197 []       3     214 ..       3     214 .. 0.97

  Alignments for each domain:
  == domain 1  score: 223.2 bits;  conditional E-value: 1.1e-69
                 EEEEEEEHHHHHHHHHHHHH...HHHCH...............HHHT.....TTEEEEE.....EEESBHHHHHTS-GS........EEEE--CCCCTT CS
     Tubulin   1 eiivigvGqcGnqignelwellakehgiqsdg...........dslesfFsesgkveyi.prsvaidtdpqvlneikags..elfnpnklllgkegagn 85 
                 eii+i  GqcGnqig ++we+++ ehg++ +g           ++l+++F+e+++++   prs+ +d++p +++++++++   lf+p+++++g+++agn
  CCD24308.1   3 EIIHISTGQCGNQIGAAFWETICGEHGLDLNGnvlpntssimtSKLNVYFNETSSGSKWvPRSINVDLEPGTIDAVRNSKmsGLFRPDNFIFGQSSAGN 101
                 79**************************95557*******************88877666*************************************** PP

                 C--TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--.GG.G-HHHHHHHHHHHHHHHHT-SE CS
     Tubulin  86 ngaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPs.efsevvvepynailalkelieesda 183
                  +a+g+++ g+e+ +++++ ir+e+e+cd lqgf+i +slgGGTGSG+g+++++++kee+p++++ t++v+Ps ++s+ vvepyna l++++lie++  
  CCD24308.1 102 VWAKGHYTEGAELVDSVMDVIRREAESCDRLQGFQISHSLGGGTGSGMGTLLISKIKEEFPDRMMATFSVIPSpKNSDTVVEPYNATLSMHQLIEYASE 200
                 *************************************************************************************************** PP

                 EEEEEHHHHHCCST CS
     Tubulin 184 vividNdaLlkiln 197
                 +++idN+aL++i++
  CCD24308.1 201 TFCIDNEALYNICQ 214
                 ************96 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.25   7.6e+02      65     110 ..      42      87 ..      32      88 .. 0.79
   2 !  141.0   0.1   7.3e-45   2.2e-41       1     125 [.     263     384 ..     263     385 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHTTTS-BSTTSTTTEEEEEEECECT-TTTSSCEEEE CS
   Tubulin_C  65 evnkavqrikekkkaqfveWiptgikvalnkkspyvkkqskvsvlm 110
                  ++++  ++  +++++  +W+p +i v l       +++sk+s+l+
  CCD24308.1  42 SIMTSKLNVYFNETSSGSKWVPRSINVDLEPGTIDAVRNSKMSGLF 87 
                 4566666677777777889*********999999999999999876 PP

  == domain 2  score: 141.0 bits;  conditional E-value: 7.3e-45
                 TTC-EEEEEEESSSCTTTTTCS-HHHHHHHHHTCSGGGBSSSTSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEEEEEECECT CS
   Tubulin_C   1 PrlhFlltsyaPlvsaekaavektsvqdvtrallepknimvkvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWiptgikvalnkkspy 99 
                 PrlhF++++yaPl++ ++++++++sv ++t++++++kn+m+++dpr+g+yl++a+l+rG+v++kev++++ +++ +++ +fveWip+++++++++++p+
  CCD24308.1 263 PRLHFFMIGYAPLTAMNAQSFRSLSVPELTQQMFDSKNMMAAADPRNGRYLTVAALFRGNVSVKEVEDEMYKVQLRNSDYFVEWIPNNVQTSVCSVPPK 361
                 9*************************************************************************************************8 PP

                 -TTTSSCEEEEEEEEGGGHHHHHHHH CS
   Tubulin_C 100 vkkqskvsvlmlaNttsiaelfkrll 125
                   + s   +++++N+tsi+elf+r++
  CCD24308.1 362 NSDIS---ATFIGNSTSIKELFQRID 384
                 76665...****************97 PP

>> Tubulin_3  Tubulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   7.3e-07    0.0022      64     154 ..     122     206 ..     106     244 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.3e-07
   Tubulin_3  64 lrpfaeecdqlrglqvftgvddaWG.GfaakylerlrdeygkksilvWvlaleeklkkkkkaklerklkklnkarslkelseqaslyvPiak 154
                 +r  ae cd+l+g+q+  +     G G ++  + ++++e++ + + ++ + + +++++      +  ++  n + s+++l e+as  + i +
  CCD24308.1 122 IRREAESCDRLQGFQISHSLGGGTGsGMGTLLISKIKEEFPDRMMATFSV-IPSPKNS------DTVVEPYNATLSMHQLIEYASETFCIDN 206
                 68889**************99887769***************99877754.4444433......2345667888888888888888777753 PP

>> Misat_Tub_SegII  Misato Segment II tubulin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   8.5e-06     0.026       1      70 [.       2      75 ..       2     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 8.5e-06
  Misat_Tub_SegII  1 rEivtlqlGnyaNyvgtHfWNt..Qesyftydeeeee..sev.dhdvlfregetkqgqvtytPRllivDlkgslg 70
                     rEi+ ++ G+  N +g+ fW t   e+ ++ + +  +  s +  +++++  +et +   +++PR + vDl+ ++ 
       CCD24308.1  2 REIIHISTGQCGNQIGAAFWETicGEHGLDLNGNVLPntSSImTSKLNVYFNET-SSGSKWVPRSINVDLEPGTI 75
                     8*******************9833577776666665577666344455555555.556689********986654 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.7e-05      0.14     138     200 ..     114     175 ..      98     193 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.7e-05
   Tubulin_2 138 alrdaikrlrgsage.eeglnvfVvgSLaGGTGSGiflDvayllrkilkeekqkvkiiglvllP 200
                  ++++++ +r++a++ +++  + +  SL GGTGSG+   ++  +++++++      ++ ++++P
  CCD24308.1 114 LVDSVMDVIRREAEScDRLQGFQISHSLGGGTGSGMGTLLISKIKEEFPDRMM--ATFSVIPSP 175
                 55666666677666666667788999**********99999999999998875..344444444 PP

>> PRESAN  Plasmodium RESA N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.78   2.3e+03      16      42 ..     202     228 ..     188     246 .. 0.62
   2 ?   -4.0   0.1         6   1.8e+04      74      96 ..     328     350 ..     326     353 .. 0.67
   3 ?    9.0   5.5   0.00066         2       5      86 ..     377     458 ..     373     466 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.78
                 SEEEHHHHHHHHHHHHHHHHHHHHHHH CS
      PRESAN  16 eviskkdmyiiwnyvmknekkkyknmi 42 
                  +i+++ +y+i  +++k+ + +y+++ 
  CCD24308.1 202 FCIDNEALYNICQRTLKLTQPSYNDLN 228
                 556666666666666666666665554 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6
                 HHHHHHHHHHHHHHHHHHHHS-S CS
      PRESAN  74 itkelkklekeynknfynllkkk 96 
                 +++e+ k++   +++f +++ ++
  CCD24308.1 328 VEDEMYKVQLRNSDYFVEWIPNN 350
                 56666677777777888887655 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00066
                 HHHHHHHT-S-SEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      PRESAN   5 eelnklinslneviskkdmyiiwnyvmknekkkyknmikkLsnyleelakkynipeeykkklwkeckneitkelkklekeyn 86 
                 +el ++i++    + +k+++  w+   +  + ++ + + +++ +++e+ ++++ + ++ ++ + +++++++ + ++++++ n
  CCD24308.1 377 KELFQRIDKQFVAMFRKKAFLHWYTSEGMDEMEFTEAESNMNDLIQEYEQYQEWRVDEDEDEMDDVEHNYNANGNNMDDHNN 458
                 6888888888889999*************************************************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3565.85
//
Query:       CCD24309.1  [L=280]
Description: hypothetical protein NDAI_0C06500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-13   49.5  15.9    5.6e-13   48.9  15.9    1.2  1  UPF0121   Uncharacterised protein family (UPF0121)


Domain annotation for each model (and alignments):
>> UPF0121  Uncharacterised protein family (UPF0121)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9  15.9   3.1e-17   5.6e-13      12     237 ..      24     273 ..      14     276 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 3.1e-17
     UPF0121  12 hlkankielalwltrlltllftvlyliplflsssys.aYykallanaatsalrlhqrl..pqlrlsreyl.erllledsvhyL.lysliFlfs..a... 100
                 ++++++ ++ ++l +lltl+ ++ + i++++  +++  Y+ +ll+  +t+ ++l+q +   ql+l+ + l ++l + d+++y+ ++s + ++s  +   
  CCD24309.1  24 RSRIRQPQFYWFLGHLLTLYHFLRFHIAILSIPKQKyHYRMILLNISITYGIVLYQFIksKQLQLNWNNLrQNLKTLDNLQYFiMLSTLLICSilSrgn 122
                 56778889********************99997444256667777789********997778899876551667788*****72445443333112111 PP

     UPF0121 101 .PvtlallPvflfallHaasytktlld...........vlgsnslvvarll..kvislvesqaen.iLrliAl.ieivlmpllivllllgkaslllpll 183
                   +  a    ++f+l+H+++y+k+ l            ++ +n +++++    k +++ ++ +   +Lrl++    i+l+ +li+  l    sll  + 
  CCD24309.1 123 vTINGASYGPVIFSLFHCLNYFKENLLpflpisivwknLINTNISIFINNYngKFLTMAQTLEILcALRLASYgLPIALLKTLIMPSLNHILSLLATVN 221
                 122333444469**********9999989999999998777777776666624455544443332578999974689********************** PP

     UPF0121 184 YyqfLklRYsSrrnPytreafseLrvlletlanhpscPavirslieklialvsr 237
                 Y  f klR+   ++  +r +++e+   ++ +++++++P+ i+s  +k  ++v+ 
  CCD24309.1 222 YIWFFKLRFL--QSQPMRLIMNEFIKKIDITVMNSNLPPNIKSYWNKYKSIVKN 273
                 **********..99999******************************9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1991.92
//
Query:       CCD24310.1  [L=184]
Description: hypothetical protein NDAI_0C06510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-45  154.6   0.1    2.3e-45  154.4   0.1    1.0  1  TMEM208_SND2  SRP-independent targeting protein 2/TMEM208


Domain annotation for each model (and alignments):
>> TMEM208_SND2  SRP-independent targeting protein 2/TMEM208
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.1   1.3e-49   2.3e-45       1     168 []       1     176 [.       1     176 [. 0.91

  Alignments for each domain:
  == domain 1  score: 154.4 bits;  conditional E-value: 1.3e-49
  TMEM208_SND2   1 mAkksaKkiaeeNkatLknlrlislavnalylllrlllrsslrprslllylllslpalllyyvlekmgrpkyd.....edgelvdsGeDL..segGl 90 
                   mA+k++Kk++++N ++L+nl++i++ + +l+ll++++    ++ ++ +++++l+lp ++++y++ek+grpk+      +++ ++++G+DL  ++g +
    CCD24310.1   1 MAGKASKKQVQTNLKVLSNLYKIMIPILLLSLLRTIFS---KTNKTPIKFFVLHLPLMASVYIIEKSGRPKFGidshsNKKVIINEGIDLssNDGNM 94 
                   9********************************99999...9999999************************97665445699*******977799* PP

  TMEM208_SND2  91 teymfDviyltwivqvlsilfg.nkfWllylviPayalYklwglilgpaffkgagsa.....eeaaeeeeaksKrqeKlekRae 168
                   +ey+fD+iyl+++ +++ i+f+ nkfW++++++P+y++Ykl+gl    +f+++++s+     ++++++eeaksKrq K+ekR+e
    CCD24310.1  95 IEYLFDLIYLSLFADFGRIIFDtNKFWYILIACPIYVGYKLYGLKQ--QFMGPSSSSskkttKDKKPQEEAKSKRQLKREKRGE 176
                   *******************************************999..777333333457779999999*************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1263  (0.0704445); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1297.86
//
Query:       CCD24311.1  [L=974]
Description: hypothetical protein NDAI_0C06520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-08   34.0  17.2      0.012   15.8   0.1    7.7  9  PPR_2     PPR repeat family
    1.8e-07   30.7   0.3    4.9e-05   22.8   0.1    2.9  3  PPR_long  Pentacotripeptide-repeat region of PRORP
    0.00023   21.2  15.1        2.1    8.8   0.1    6.8  8  PPR       PPR repeat
    0.00044   20.8   0.5         11    7.2   0.0    5.4  6  TPR_14    Tetratricopeptide repeat
    0.00065   20.2   0.0        2.7    8.6   0.0    4.6  5  TPR_19    Tetratricopeptide repeat
     0.0091   16.0   0.0        1.2    9.2   0.0    3.2  3  COX5A     Cytochrome c oxidase subunit Va


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       4.2   1.2e+04       6      16 ..     191     201 ..     189     204 .. 0.74
   2 ?   -2.9   0.0       2.7     8e+03       8      21 ..     287     300 ..     286     307 .. 0.76
   3 ?    4.3   0.0     0.015        45       1      36 [.     348     383 ..     348     388 .. 0.90
   4 !   15.8   0.1     4e-06     0.012       8      48 ..     390     430 ..     383     431 .. 0.93
   5 ?    3.1   0.0     0.036   1.1e+02       8      27 ..     497     516 ..     459     517 .. 0.93
   6 ?    4.4   0.2     0.015        44       6      47 ..     535     576 ..     531     596 .. 0.63
   7 !   11.5   0.1     9e-05      0.27       8      38 ..     609     639 ..     606     640 .. 0.93
   8 ?   -2.3   0.1       1.8   5.5e+03      16      29 ..     657     670 ..     652     674 .. 0.83
   9 ?   -0.6   0.0      0.55   1.6e+03       6      28 ..     819     842 ..     815     842 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.2
       PPR_2   6 yNtlIsglckk 16 
                 +  +++g+c+ 
  CCD24311.1 191 WMNILNGHCEF 201
                 78899999974 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.7
       PPR_2   8 tlIsglckkgkvee 21 
                 +++  +c+ gk++ 
  CCD24311.1 287 SILRTFCHLGKYDL 300
                 78999999999986 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.015
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrgleP 36 
                 p++  y +++ +l++ g++e+  kl+++  +r   P
  CCD24311.1 348 PNIQQYGIVMFALARLGELESVEKLYSQLLRRDMLP 383
                 677779999**********************99877 PP

  == domain 4  score: 15.8 bits;  conditional E-value: 4e-06
       PPR_2   8 tlIsglckkgkveeAfklfneMkkrglePnsyTysilikgl 48 
                 +l+ +++k g+++++f  ++  +k  ++P+ yTy i++k++
  CCD24311.1 390 SLLLAHYKVGDYDSCFTHYEFFEKYDVKPSKYTYAIIFKAY 430
                 5788999********************************96 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.036
       PPR_2   8 tlIsglckkgkveeAfklfn 27 
                 +l++ + + g ++e +klf+
  CCD24311.1 497 ALMDVYIESGLYDESIKLFK 516
                 899***************96 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.015
       PPR_2   6 yNtlIsglckkgkveeAfklfneMkkrglePnsyTysilikg 47 
                 yN  I  + + ++ +++ +l ++  + +l+ ++y y +lik 
  CCD24311.1 535 YNKAILTYININDAHKCEELIEYVINSKLPTDAYFYEVLIKY 576
                 666666666666666666666666666666666666666653 PP

  == domain 7  score: 11.5 bits;  conditional E-value: 9e-05
       PPR_2   8 tlIsglckkgkveeAfklfneMkkrglePns 38 
                 +++s+++k   +e  f+l+++M + +++ ns
  CCD24311.1 609 IIMSAYYKISYYEGIFQLYKKMTQMNIPVNS 639
                 79*************************9986 PP

  == domain 8  score: -2.3 bits;  conditional E-value: 1.8
       PPR_2  16 kgkveeAfklfneM 29 
                 k+k+++A+k++++ 
  CCD24311.1 657 KEKLSDAIKMLEQI 670
                 7899******9986 PP

  == domain 9  score: -0.6 bits;  conditional E-value: 0.55
       PPR_2   6 yNtlIsgl.ckkgkveeAfklfne 28 
                 +N +I ++ +   ++ee +kl n+
  CCD24311.1 819 WNDIILAYfMDPQMIEEGMKLVND 842
                 666666661567779999999986 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.6e-08   4.9e-05      72     186 ..     367     485 ..     358     498 .. 0.84
   2 !   10.1   0.1   0.00013      0.38      26     172 ..     435     579 ..     435     610 .. 0.76
   3 !    3.9   0.0    0.0098        29      96     177 ..     573     656 ..     563     676 .. 0.76

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.6e-08
                 HHHHHHHHHHHHTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHHTT-HHHHHH.HHHHHHHCT----HHHHHHHHHH CS
    PPR_long  72 argfevfeamkakgvspnEatvtalarlaaakedgdlafelvkemekagvsPrLRsyaPaLaayckagdadkale.veehlkasgveleEaelaaLLkv 169
                 +++ + ++++  + + p  a++ +l     + +d d +f+  + +ek++v+P   +ya +  ay+ ++d++ al   + +  +++ve +E+ +a+L++ 
  CCD24311.1 367 ESVEKLYSQLLRRDMLPTYAVLESLLLAHYKVGDYDSCFTHYEFFEKYDVKPSKYTYAIIFKAYRGLNDIEGALRfLKRKTMKKQVEFTESHFATLIQT 465
                 5677889999999999999*****99999999*****************************************98357889999*************99 PP

                 HHHTT-...HHHHHHHHHHH CS
    PPR_long 170 sakagr...edkvYelLhkl 186
                 + k+ +   ++ +Y++++++
  CCD24311.1 466 TSKTTNyvvGKELYQIMQSV 485
                 88776422245566666544 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00013
                 -HHHHHHHHHH.HHHSSS---HHHHHHHHHHHHHC.HCSTTTHHHHHHHHHHHHHHHHH.TT----HHHHHHHHHHHHHTT-HHHHHHHHHHHH.HH-. CS
    PPR_long  26 DaaaAlelydk.avaegvrlaqyhynvllylcskaeaaseskknkalargfevfeamka.kgvspnEatvtalarlaaakedgdlafelvkeme.kag. 120
                 D+++Al   ++ +++++v++++ h+ +l+   sk+++            g e ++ m++  +++p+  +v+al+ +   ++  d++ +l k+   +++ 
  CCD24311.1 435 DIEGALRFLKRkTMKKQVEFTESHFATLIQTTSKTTNYV---------VGKELYQIMQSvYKITPSGKSVAALMDVYIESGLYDESIKLFKSYIaNKKd 524
                 77888888775155688*************999885443.........45677777777689***************************9997423322 PP

                 ..S-.--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHHHHHHHHHH CS
    PPR_long 121 ..vs.PrLRsyaPaLaayckagdadkaleveehlkasgveleEaelaaLLkvsak 172
                   ++      y+ a+ +y + +da k+ e  e +  s++  +   ++ L+k  +k
  CCD24311.1 525 qfIDdNVVPVYNKAILTYININDAHKCEELIEYVINSKLPTDAYFYEVLIKYMVK 579
                 3444355679*****************9988888777777777667777666665 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.0098
                 HHHHHHHT.T-HHHHHHHHHHHH.HH-S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHHHHHHHHHHTT-HH CS
    PPR_long  96 larlaaak.edgdlafelvkeme.kagvsPrLRsyaPaLaayckagdadkaleveehlkasgveleEaelaaLLkvsakagred 177
                 l++ +++  +++d a e + ++  +  ++ +   ++ ++ ay k    +  ++  ++++++++ ++ + l  L+k + k   +d
  CCD24311.1 573 LIKYMVKLqGNFDSAIETIDQLMnHPTITVKPSHFEIIMSAYYKISYYEGIFQLYKKMTQMNIPVNSPILLYLIKSTFKYSIND 656
                 556555543889999999999762557888889999999999999999999999999999999999888888888777655444 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.1   3.3e+03       4      17 ..     286     299 ..     285     301 .. 0.88
   2 !    8.8   0.1   0.00069       2.1       3      30 ..     353     380 ..     353     381 .. 0.92
   3 ?   -3.3   0.0       4.9   1.5e+04       5      20 ..     390     405 ..     390     409 .. 0.81
   4 ?    0.2   0.0      0.39   1.2e+03       1      25 [.     421     445 ..     421     446 .. 0.91
   5 !    8.6   0.0   0.00079       2.4       5      24 ..     497     516 ..     494     521 .. 0.93
   6 !    7.9   0.2    0.0013       3.9       5      31 .]     609     635 ..     605     635 .. 0.90
   7 ?   -2.5   0.2       2.8   8.2e+03      15      28 ..     659     672 ..     657     673 .. 0.83
   8 ?   -3.8   0.0         6   1.8e+04      17      25 ..     705     713 ..     701     713 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
         PPR   4 nslIsgycknGkle 17 
                 +s+++ +c+ Gk++
  CCD24311.1 286 TSILRTFCHLGKYD 299
                 789999******98 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00069
         PPR   3 ynslIsgycknGkleeAlelfkeMkekG 30 
                 y +++ ++++ G+le +++l+ ++++++
  CCD24311.1 353 YGIVMFALARLGELESVEKLYSQLLRRD 380
                 8899******************999875 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 4.9
         PPR   5 slIsgycknGkleeAl 20 
                 sl+ ++ k G+++ ++
  CCD24311.1 390 SLLLAHYKVGDYDSCF 405
                 57778999****9987 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.39
         PPR   1 vtynslIsgycknGkleeAlelfke 25 
                 +ty ++ ++y   +++e Al+++k+
  CCD24311.1 421 YTYAIIFKAYRGLNDIEGALRFLKR 445
                 5899999*************99985 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.00079
         PPR   5 slIsgycknGkleeAlelfk 24 
                 +l+++y  +G+++e ++lfk
  CCD24311.1 497 ALMDVYIESGLYDESIKLFK 516
                 79*****************8 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.0013
         PPR   5 slIsgycknGkleeAlelfkeMkekGi 31 
                 +++s+y k  ++e  ++l+k+M +++i
  CCD24311.1 609 IIMSAYYKISYYEGIFQLYKKMTQMNI 635
                 78********************99875 PP

  == domain 7  score: -2.5 bits;  conditional E-value: 2.8
         PPR  15 kleeAlelfkeMke 28 
                 kl++A+++++++ e
  CCD24311.1 659 KLSDAIKMLEQIME 672
                 7899*****99876 PP

  == domain 8  score: -3.8 bits;  conditional E-value: 6
         PPR  17 eeAlelfke 25 
                 ++Alel+++
  CCD24311.1 705 KKALELLNK 713
                 79****985 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.019        58      10      32 ..     359     381 ..     351     403 .. 0.83
   2 ?   -1.2   0.0       1.8   5.4e+03       7      26 ..     426     445 ..     422     445 .. 0.83
   3 !    7.2   0.0    0.0036        11       5      30 ..     496     521 ..     493     527 .. 0.87
   4 ?   -1.4   0.0         2   5.9e+03      14      25 ..     581     592 ..     573     596 .. 0.83
   5 ?   -2.6   0.0       4.9   1.5e+04      17      27 ..     660     670 ..     657     675 .. 0.81
   6 ?    0.5   0.0       0.5   1.5e+03      26      43 ..     795     812 ..     792     813 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.019
      TPR_14  10 allalGdpdeAiallrralalaP 32 
                 al++lG+++  ++l+ ++l+++ 
  CCD24311.1 359 ALARLGELESVEKLYSQLLRRDM 381
                 6899***************9973 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.8
      TPR_14   7 laeallalGdpdeAiallrr 26 
                 + +a++ l d ++A++ l+r
  CCD24311.1 426 IFKAYRGLNDIEGALRFLKR 445
                 5689999*********9987 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0036
      TPR_14   5 lalaeallalGdpdeAiallrralal 30 
                 +al +++ ++G +de+i+l++ ++a 
  CCD24311.1 496 AALMDVYIESGLYDESIKLFKSYIAN 521
                 7899*****************99984 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 2
      TPR_14  14 lGdpdeAiallr 25 
                 +G++d Ai+  +
  CCD24311.1 581 QGNFDSAIETID 592
                 79******9766 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 4.9
      TPR_14  17 pdeAiallrra 27 
                 + +Ai++l+++
  CCD24311.1 660 LSDAIKMLEQI 670
                 679*****986 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 0.5
      TPR_14  26 ralalaPddaeawlllaq 43 
                 r l++ P+ +eaw + ++
  CCD24311.1 795 RQLDQLPKYLEAWQEKGF 812
                 789999*******99876 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.1   6.2e+03      34      62 ..     359     386 ..     357     392 .. 0.79
   2 ?   -2.1   0.0         2   5.9e+03      32      50 ..     427     445 ..     409     452 .. 0.75
   3 !    8.6   0.0    0.0009       2.7      12      57 ..     480     524 ..     479     528 .. 0.86
   4 ?    3.6   0.0     0.033        98      38      53 ..     581     596 ..     560     598 .. 0.85
   5 ?    1.1   0.0       0.2     6e+02      41      55 ..     660     674 ..     656     683 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.1
      TPR_19  34 allalgqldeAealLdalpeedpddarya 62 
                 al  lg+l+  e+l ++l++ d   + ya
  CCD24311.1 359 ALARLGELESVEKLYSQLLRRDML-PTYA 386
                 677889999999999999998877.6666 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
      TPR_19  32 AeallalgqldeAealLda 50 
                  +a+  l++++ A + L++
  CCD24311.1 427 FKAYRGLNDIEGALRFLKR 445
                 6788888888888888876 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0009
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 ++++++++  p    +++ L+++++++g +de ++l + + + ++d
  CCD24311.1 480 QIMQSVYKITPSGKSVAA-LMDVYIESGLYDESIKLFKSYIANKKD 524
                 678888888887777777.9*****************999988877 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.033
      TPR_19  38 lgqldeAealLdalpe 53 
                 +g++d A++++d+l++
  CCD24311.1 581 QGNFDSAIETIDQLMN 596
                 6************986 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.2
      TPR_19  41 ldeAealLdalpeed 55 
                 l +A+++L++++e +
  CCD24311.1 660 LSDAIKMLEQIMENA 674
                 455666666665554 PP

>> COX5A  Cytochrome c oxidase subunit Va
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.039   1.2e+02      26      62 ..     369     405 ..     355     413 .. 0.83
   2 !    9.2   0.0   0.00039       1.2      35      90 ..     413     470 ..     409     474 .. 0.87
   3 ?   -4.1   0.0       5.5   1.6e+04      58      72 ..     660     674 ..     654     682 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.039
       COX5A  26 lrrglnnlfayDlvPepkvieaalracrrvndfalav 62 
                 + +   +l+  D++P  +v+e+ l a  +v d+  + 
  CCD24311.1 369 VEKLYSQLLRRDMLPTYAVLESLLLAHYKVGDYDSCF 405
                 456667899**********************997765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00039
       COX5A  35 ayDlvPepkvieaalracrrvndfalavRilE..avkekvenkkqiYeyllqelkpvl 90 
                 +yD+ P+       ++a r +nd+  a+R+l   ++k++ve +++ + +l+q ++++ 
  CCD24311.1 413 KYDVKPSKYTYAIIFKAYRGLNDIEGALRFLKrkTMKKQVEFTESHFATLIQTTSKTT 470
                 68999999999999*****************633799999999999999999988775 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 5.5
       COX5A  58 falavRilEavkekv 72 
                 ++ a+++lE++ e +
  CCD24311.1 660 LSDAIKMLEQIMENA 674
                 566899999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 6387.71
//
Query:       CCD24312.1  [L=140]
Description: hypothetical protein NDAI_0C06530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-34  118.9  39.2    2.1e-34  118.7  39.2    1.0  1  rRNA_processing  rRNA processing
  ------ inclusion threshold ------
        2.3    6.9  17.4        2.7    6.7  17.4    1.2  1  PV-1             PV-1 protein (PLVAP)
          8    6.8  12.3         20    5.5   0.1    2.2  2  Ntox16           Novel toxin 16


Domain annotation for each model (and alignments):
>> rRNA_processing  rRNA processing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7  39.2   3.5e-38   2.1e-34       1     140 [.       6     139 ..       6     140 .] 0.95

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 3.5e-38
  rRNA_processing   1 kkknkkkftdkeykskeikkeltrkarlrkeYfKllkkegleeeekvakeaekskneeeeskkskkeareeeeklkfkerkeivkerkeekree 94 
                      +++n+kkft +eyk+kei++++t+k+rl+keYfK+lk+eg++++ek     +++ n  +++ k+ ke+r+ ++k+k++e+k++++erk+ ++e+
       CCD24312.1   6 QQHNRKKFT-REYKVKEIQRSITKKTRLKKEYFKALKDEGYTVPEK-----KGEDNPVKRNVKKLKEERALQGKQKLDEKKAMKRERKKLQKEQ 93 
                      689******.9*********************************99.....566666667888899999************************* PP

  rRNA_processing  95 kleavqeklerikalekkkkerekrkkkLskkTkkGQPvMgprien 140
                      +++++++++eri+++++k+  re+rk ++++kT++GQP+Mgp+i++
       CCD24312.1  94 IQDQRKQEMERIQMSKEKHMARERRKTRMTQKTRSGQPKMGPKIDD 139
                      ********************************************96 PP

>> PV-1  PV-1 protein (PLVAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  17.4   0.00045       2.7     294     378 ..      22     108 ..       6     136 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00045
        PV-1 294 iervarensdlqrqkleaeqslrasqeakekvekeaqareaklqaecarqtqlaleekaalrkerdnlakel..eekkreveqlklq 378
                 i+r     + l++   +a +    +  +k+   +  +   +kl++e a q +  l+ek a+++er +l+ke   +++k+e+e++++ 
  CCD24312.1  22 IQRSITKKTRLKKEYFKALKDEGYTVPEKKGEDNPVKRNVKKLKEERALQGKQKLDEKKAMKRERKKLQKEQiqDQRKQEMERIQMS 108
                 444444444444444444443334444555555666777899*****************************7224566666666554 PP

>> Ntox16  Novel toxin 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0033        20      30      62 ..       5      39 ..       1      47 [. 0.80
   2 ?    3.9   7.6     0.011        65       9      57 ..      72     120 ..      68     127 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0033
      Ntox16 30 kdkdncknlid..kiakirkcidaRikidrkCfkg 62
                k+++n+k+     k+++i+  i ++++++++ fk+
  CCD24312.1  5 KQQHNRKKFTReyKVKEIQRSITKKTRLKKEYFKA 39
                56667777665589****************99987 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.011
      Ntox16   9 ehdkLekevekkckksslgsCkdkdncknlidkiakirkcidaRikidr 57 
                  ++kL++++  k + ++l++ + +d++k+++++i+  ++   aR ++++
  CCD24312.1  72 GKQKLDEKKAMKRERKKLQKEQIQDQRKQEMERIQMSKEKHMARERRKT 120
                 5799******************************999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3379  (0.188466); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1001.08
//
Query:       CCD24313.1  [L=758]
Description: hypothetical protein NDAI_0C06540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-63  211.4   0.1    1.5e-62  210.7   0.1    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    1.6e-36  124.7   0.0    3.3e-36  123.7   0.0    1.5  1  EFG_IV       Elongation factor G, domain IV
    7.5e-31  106.1   0.0    1.7e-30  104.9   0.0    1.6  1  EFG_II       Elongation Factor G, domain II
    1.3e-23   82.9   0.0    2.6e-23   81.9   0.0    1.6  1  EFG_C        Elongation factor G C-terminus
    4.1e-14   52.7   0.3    1.2e-13   51.3   0.3    1.9  1  GTP_EFTU_D2  Elongation factor Tu domain 2
    2.7e-06   27.2   0.0    6.4e-06   26.0   0.0    1.6  1  RF3_C        Class II release factor RF3, C-terminal domain
    6.5e-06   26.5   0.1    0.00041   20.8   0.0    2.7  2  AvrPtoB_bdg  Avirulence AvrPtoB, BAK1-binding domain
     0.0053   16.8   0.0      0.015   15.4   0.0    1.8  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
       0.17   11.8   1.7        3.5    7.6   0.0    3.4  5  DUF1825      Domain of unknown function (DUF1825)


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.7   0.1   7.3e-66   1.5e-62       3     193 ..      69     345 ..      67     346 .. 0.92

  Alignments for each domain:
  == domain 1  score: 210.7 bits;  conditional E-value: 7.3e-66
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST...HCHSHHHHHHTSCSSCEEEEEE..TTCSSEEEEEEEESSSGGGHHHHHHHHHT-SE CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv...lDtlkeErergiTiksaaisle..ketkkylinliDtPGHvdFskevirglrvlDg 96 
                 +rnigi +h+D+GKtT+t+r+ly+tg+i+  +e+++ ++v   +D+++ Ere+giTi+saa++++  ke k+y++nliDtPGH+dF+ ev+r+lrvlDg
  CCD24313.1  69 LRNIGISAHIDSGKTTFTERVLYYTGRIKAIHEVRGRDNVgakMDSMDLEREKGITIQSAATYCSwdKENKNYHFNLIDTPGHIDFTIEVERALRVLDG 167
                 69*********************************55444455**********************978******************************* PP

                 EEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH.......................................... CS
    GTP_EFTU  97 avlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk.......................................... 153
                 avlvv+av+Gv++qt +v r++++++vp+i+fiNKmDr++++  + ++++++kl+                                            
  CCD24313.1 168 AVLVVCAVSGVQSQTVTVDRQMRRYNVPRITFINKMDRMGSNPFKAIDQLNSKLKIPaaalqipigsesdlkgvvdiisrtalynkgsngeivekggip 266
                 ******************************************************666*****************************************9 PP

                 ........................................HHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 154 ........................................eeklekygekgekevpvvfgSalkgegvktllealvellp 193
                                                         +++++ ++  + k++pv++gSal + g++++l+a+v++lp
  CCD24313.1 267 tdleelveerrrilvetladvddemaelfleeqeptleqiKGAIRRATIAR-KFTPVLMGSALANVGIQPVLDAIVDYLP 345
                 999999999999999999999877777777766666666555555555555.7*************************99 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.0   1.6e-39   3.3e-36       1     120 [.     540     659 ..     540     660 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.7 bits;  conditional E-value: 1.6e-39
                 TCCESCEE.SS-CCHCCCCCCCHTSSSHCCCCCEEEECCTT.TTSSEEEEE--STCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE--TT CS
      EFG_IV   1 pqVayrEtirkpvkereeklkkqsggdgqyakvileiePle.egsgnefvdetkggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgslhev 98 
                 pqV+yrE+i+ p++ +++++kkqsgg+gqy+++i ++ P+e  g++n+f  +++gg++p++y  a+ kGf++ +++Gpl+g++v +vk+ + dg++h+v
  CCD24313.1 540 PQVSYRESITIPAQ-FDYTHKKQSGGAGQYGRIIGTLSPAEeGGKENVFQTAIVGGRIPDKYLAACGKGFEDSCEKGPLIGHKVLNVKMLINDGAIHSV 637
                 8*************.**************************88999***************************************************** PP

                 TC-HHHHHHHHCHHHHHHHHCC CS
      EFG_IV  99 dsseaafkpaarralkeallkA 120
                 ds e+ fk a+  a+++a+l+A
  CCD24313.1 638 DSNELSFKAATMGAFRDAFLRA 659
                 ********************99 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   8.3e-34   1.7e-30       1      75 []     466     539 ..     466     539 .. 0.96

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 8.3e-34
      EFG_II   1 fPePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkreykvevelgk 75 
                 +P++visl+i+pksk d+ ++skaL+r+++EDpt+rv++d+e+ket++sGmGelHlei+ver+krey+ve+ +g+
  CCD24313.1 466 VPDSVISLSISPKSK-DSANFSKALNRFQKEDPTFRVRFDPESKETVISGMGELHLEIYVERMKREYNVECVTGQ 539
                 7***********876.7889**************************************************99885 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.0   1.3e-26   2.6e-23       1      88 [.     662     748 ..     662     749 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 1.3e-26
                 EEEEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE.TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE--HHHHHH CS
       EFG_C   1 vllEPivkveievpeeyvgkvisdlssrrGeiedmeqdasgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevpgdklde 88 
                 v+lEPi++v+++ p+e++g+vi++l++ ++ i+d+++   + ++++ae+ l++l+gfat+Lr+ T+G+g+fs+ef++Y+++p +++++
  CCD24313.1 662 VILEPIMNVTVTSPNEFQGNVIGLLNKLQAVIQDTDNG-HDEFTLKAECTLSTLFGFATSLRASTQGKGEFSLEFNRYAPTPPHVQKQ 748
                 59************************************.*********************************************9986 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.3   5.8e-17   1.2e-13       1      74 []     387     453 ..     387     453 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 5.8e-17
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtlt 74 
                  G+++++rvy+G+lkkG ++ +  ++t+kk   +++s+l ++h +e e+v++   G i+a  g+++    Gdt+t
   CCD24313.1 387 GQLTYIRVYQGKLKKGNYITN--VKTGKK---VKVSRLVRMHSNEMEDVDEIGSGEICATFGIDC--SSGDTFT 453
                  7899*****************..******...*********************************..79**985 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   3.2e-09   6.4e-06      22      90 ..     481     549 ..     464     565 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 3.2e-09
                 GHHHHHHHHHHHHHCTSSEEEEET.TSS-EEEEESSTHHHHHHHHHHHHHH---EEEEE-S--EEEEEE CS
       RF3_C  22 krkqlrkgleqLaeEGavqvfkeeeageelilgaVGqLQfeVveeRlknEYgvevrleslpyslarwve 90 
                  + +++k+l+ +++E  +   + + +++e++++ +G+L +e+  eR+k+EY+ve+ + + ++s+   ++
  CCD24313.1 481 DSANFSKALNRFQKEDPTFRVRFDPESKETVISGMGELHLEIYVERMKREYNVECVTGQPQVSYRESIT 549
                 45689**********9998888887899***************************99888877766664 PP

>> AvrPtoB_bdg  Avirulence AvrPtoB, BAK1-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.1     2e+02      48      73 ..      61      86 ..      46      99 .. 0.75
   2 !   20.8   0.0   2.1e-07   0.00041      24      83 ..     296     355 ..     282     360 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.1
                 --HHHHHHHHCTT--S----SS-BS- CS
  AvrPtoB_bdg 48 ipldigsalqnvginpsidlgeslvq 73
                   ++    l+n+gi   id g++   
   CCD24313.1 61 QDIEASKILRNIGISAHIDSGKTTFT 86
                 333445679***********987655 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 2.1e-07
                  HHCTT--HHHHHHHHHHHHHH-----HHHHHHHHCTT--S----SS-BS--HHHHHHHHH CS
  AvrPtoB_bdg  24 lvqqgvnlehlrtalerhvmqrlpipldigsalqnvginpsidlgeslvqhpllnlnval 83 
                  l +q   le+++ a+ r  + r   p+ +gsal nvgi+p +d     +  p   ln al
   CCD24313.1 296 LEEQEPTLEQIKGAIRRATIARKFTPVLMGSALANVGIQPVLDAIVDYLPNPSEILNTAL 355
                  5567889************************************98888888887788777 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.6e-06     0.015      10     114 .]      80     202 ..      71     202 .. 0.55

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.6e-06
                 SSHHHHHHHHH..................T.S..TEEESSSTTSSSSEEEEEEE....ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEE CS
    MMR_HSR1  10 vGKStLinalt..................g.e..kaivsdkpgtTrdinegrvk....lkgkeielvDtpGliegaseekglgkaflalee.adlillv 82 
                 +GK+t+  + +                  g +      ++++g T++      +     k+ +++l+DtpG i+       ++ ++++  +  d ++lv
  CCD24313.1  80 SGKTTFTERVLyytgrikaihevrgrdnvGaKmdSMDLEREKGITIQSAATYCSwdkeNKNYHFNLIDTPGHID-------FTIEVERALRvLDGAVLV 171
                 566666666664444444333333332221212234566777888888666666333222466********776.......344444433424665555 PP

                 EETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  83 vdaseeklkpldeeleelleeakkplilvlnk 114
                 v a  ++++ +  ++ + +++ + p i  +nk
  CCD24313.1 172 VCAV-SGVQSQTVTVDRQMRRYNVPRITFINK 202
                 5544.346666666666666666888888876 PP

>> DUF1825  Domain of unknown function (DUF1825)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.25   4.9e+02      56      92 ..      36      72 ..      26      77 .. 0.83
   2 ?   -3.9   0.0       6.7   1.3e+04      24      41 ..     125     142 ..     116     146 .. 0.79
   3 ?   -2.8   0.0       3.1   6.1e+03      43      93 ..     201     218 ..     196     222 .. 0.53
   4 ?    7.6   0.0    0.0018       3.5      45      81 ..     269     306 ..     262     315 .. 0.86
   5 ?   -2.8   0.0         3     6e+03      32      54 ..     502     522 ..     501     530 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.25
     DUF1825 56 mkrlelsddflakmtvkqlktqlgqfgitpqqmfdql 92
                + r+++s+    k+++ q++++l+   i  ++++ ++
  CCD24313.1 36 TSRIRVSEYDDEKVVIDQINKNLTPQDIEASKILRNI 72
                46999**99999***********99999988888766 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6.7
     DUF1825  24 iqlgskygkfdreGkkif 41 
                 iq + +y  +d+e k+ +
  CCD24313.1 125 IQSAATYCSWDKENKNYH 142
                 566788999999999765 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3.1
     DUF1825  43 ekleelleryrilmkrlelsddflakmtvkqlktqlgqfgitpqqmfdqln 93 
                 +k                                 + ++g +p + +dqln
  CCD24313.1 201 NK---------------------------------MDRMGSNPFKAIDQLN 218
                 44.................................4455555555555555 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0018
     DUF1825  45 leell.eryrilmkrlelsddflakmtvkqlktqlgqf 81 
                 leel+ er ril++ l   dd++a++ ++ ++  l+q+
  CCD24313.1 269 LEELVeERRRILVETLADVDDEMAELFLEEQEPTLEQI 306
                 677652799********************999988876 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 3
     DUF1825  32 kfdreGkkifiekleelleryri 54 
                 +fd e k   i  + el   + i
  CCD24313.1 502 RFDPESKETVISGMGELH--LEI 522
                 588888888888888774..333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 5404.03
//
Query:       CCD24314.1  [L=1080]
Description: hypothetical protein NDAI_0C06550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-55  185.8   2.8    1.6e-54  184.2   2.8    1.9  1  Med14     Mediator complex subunit MED14


Domain annotation for each model (and alignments):
>> Med14  Mediator complex subunit MED14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.2   2.8   9.1e-59   1.6e-54       1     190 [.     115     316 ..     115     317 .. 0.96

  Alignments for each domain:
  == domain 1  score: 184.2 bits;  conditional E-value: 9.1e-59
                 EEEHHHHHHHHHHHHHHHHHHHHHHCT......-TS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG..HHHCCHHHHHHHHHHHHHHCCCCCHCCCC CS
       Med14   1 lvpLselverlvqasykeLselaetlp......tsesdlerkrellkfaqktrqqfvKllvlvkWsrk..aekvsklidllaflrqqneafedaadalk 91 
                 +vp+s +v++++ +++ke+s++++t+        s+s++ +k+++lk+++++r+qf+Kl+vl+kW+r+  +++++++idll+++r++n+++++++++lk
  CCD24314.1 115 QVPMSLIVRNITIFTIKEISQFMKTNLhtdpssPSSSSSIKKMNFLKLIIFLRNQFLKLYVLIKWTRTikNNNFNNMIDLLNWFRTTNMLVNNCIWSLK 213
                 69***********************999***999999******************************999***************************** PP

                 CHHHHHHCCHHHHHHHHCHHCHCTTCHCHCCCCCCSCSH.....--S---SHHHHHHHHHHHHHHHHHHHHBS---CCGSS.EECCTCEEEESSSBECC CS
       Med14  92 elkeslanaklpnpdlktAleVLstGrysrlpslikeey.....ppkpltakeilktlkdlnelirlrLalhekiPkefkn.yeikdGrvtftvpgeFe 184
                  + +s+anaklpn+dl +AleVLs Gr  +lp++ ++       +  +++++ ilk+lkdln l++++++l+ +iPk+f n y i++Gr++++v++eF+
  CCD24314.1 214 GNLTSMANAKLPNVDLVSALEVLSLGRT-NLPTHDFKLSgesnnTFLKIPNDLILKKLKDLNLLVSIKISLM-DIPKQFDNdYFIANGRIYLKVENEFQ 310
                 ***************************9.******88835676777889*********************99.8*****888***************** PP

                 C-EECE CS
       Med14 185 vdLtla 190
                 ++L+++
  CCD24314.1 311 IQLSTI 316
                 ****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1080 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 7183.51
//
Query:       CCD24315.1  [L=777]
Description: hypothetical protein NDAI_0C06560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-34  117.3   0.4    1.9e-33  116.0   0.4    1.7  1  VASt             VAD1 Analog of StAR-related lipid transfer d
    6.1e-08   32.5   0.3    1.7e-07   31.1   0.3    1.8  1  GRAM             GRAM domain
  ------ inclusion threshold ------
          2    8.8  12.3       0.89    9.9   1.8    3.2  3  Orf78            Orf78 (ac78)


Domain annotation for each model (and alignments):
>> VASt  VAD1 Analog of StAR-related lipid transfer domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   0.4   3.2e-37   1.9e-33       5     153 ..     490     634 ..     486     635 .. 0.90

  Alignments for each domain:
  == domain 1  score: 116.0 bits;  conditional E-value: 3.2e-37
                 EEESS-HHHHHHHHH.SS-THHHHHHHHH.TT-BS-H..HHSE.........EEEEEEEE--SSSS-SEEEEEEEEE..EEEEETT.EEEEEEEEE-T. CS
        VASt   5 evlpisvkalfellf.gdkseflkkfleerqkttdis.vgpweeakekgkltRklsytkplkgsigpkqtkvtetqtilveeddly.yivvvtttktpl 100
                   l+ s++ +fe+lf + + efl +fle++  +++is +++ +++++++   R++sy+k+lk s+gpk+t+++ ++t  +  +dly yi++v+ttktp 
  CCD24315.1 490 LILNGSPGLIFEILFsEHNPEFLLEFLESQ-DSHNISdINEFHNSNTTNYPFRNYSYIKNLKFSVGPKSTNCNVEET--LIYYDLYdYINIVNTTKTP- 584
                 56899**********7667789*******6.999996589999999999999*************************..67778999***********. PP

                 TSTTTTSEEEEEEEEEEEETTTE..E.EEEEEEEEEESS--TTHHHHHHHHHH CS
        VASt 101 dvPygdsFsvetryvitwgsknskstcrltvstkvefsksswlkgiIekgalk 153
                 +vP+g sFs++try+++w +++    c l++s++ve+s+ssw+k+++e+++  
  CCD24315.1 585 NVPSGGSFSTKTRYMLRWNDET---HCFLKISYWVEWSGSSWIKSLVESSCKT 634
                 ******************5544...579*********************9975 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.3   2.8e-11   1.7e-07       2      96 ..     221     324 ..     220     342 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 2.8e-11
                 HHHHHS--.--TT--EEEEEEEEEESS.SEEEEEEEEESSEEEEEE-ST...........T---EEEE..EGGGEEEEEE....-TT-TT-EEEEESS- CS
        GRAM   2 lfrkkfke.llpeEkllatykCyllrdggpvqGrlyltnyrlcFrskpl...........gsskkvvl..pladikriekstsaanllengiqvetssk 86 
                 +f+k f+   +++++l+++++C+l+ d     G+ly++++++ F++ +            + ++++++   ++dik+iek   +   ++  i+ e +++
  CCD24315.1 221 KFHKLFNInHSKNDNLIDDFNCTLVDD--SIPGKLYVSESYIRFYPTNMtsannntdknnNNNVNIIIeyHFKDIKNIEK--TEEEGIAIHITTEDGND 315
                 799999955666*************99..889************************98754454577799**********..33333333333333333 PP

                 ..EEEEE--T CS
        GRAM  87 dlelaFagfv 96 
                 + el F  fv
  CCD24315.1 316 K-ELLFCNFV 324
                 3.66665555 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3       1.3   7.8e+03      43      48 ..     144     149 ..     116     182 .. 0.50
   2 ?    5.4   0.2    0.0038        23      16      81 ..     248     334 ..     243     340 .. 0.60
   3 ?    9.9   1.8   0.00015      0.89      30      91 ..     690     748 ..     654     759 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.3
       Orf78  43 aaeknd 48 
                 ++++n+
  CCD24315.1 144 IKSRNQ 149
                 111111 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0038
       Orf78  16 yIPLKLAlndl............dnddndkaenkkekksaaeknditekesn.........aaekaqalnillisllavvcvlvlly 81 
                  IP KL +++             +n+++++++n+ +    ++ +di++ e++         ++e  + +++l+  ++++  +lvll 
  CCD24315.1 248 SIPGKLYVSESyirfyptnmtsaNNNTDKNNNNNVNIIIEYHFKDIKNIEKTeeegiaihiTTEDGNDKELLFCNFVSLYPILVLLL 334
                 677777777767777777665431111112222222222333344444444456688998877888888889999999999999986 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00015
       Orf78  30 dndkaenkkekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYfvilre 91 
                 +n++  ++ ++ ++  +++i ++ +  + k++++ +    l+++++++++   iyY++ l++
  CCD24315.1 690 NNNTRPKEIKADNVVREEKIGNMPEMVSIKMSKKLL---ILVMILVIFLICLNIYYIFSLKR 748
                 333333444455566666666666664444444444...45555666666667777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1580  (0.0881254); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 5378.28
//
Query:       CCD24316.1  [L=329]
Description: hypothetical protein NDAI_0C06570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-08   34.0   0.0    5.7e-08   33.3   0.0    1.4  1  OTU       OTU-like cysteine protease
  ------ inclusion threshold ------
      0.072   13.5   0.0        0.3   11.5   0.0    2.0  2  DUF104    Protein of unknown function DUF104
       0.11   12.7   1.1       0.19   12.0   0.2    1.9  2  DUF3310   Protein of unknwon function (DUF3310)


Domain annotation for each model (and alignments):
>> OTU  OTU-like cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   9.6e-12   5.7e-08       3      89 ..     139     221 ..     137     248 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 9.6e-12
                 SS-HHHHHHHHCCCSS.SHCCHHHHHHHHHCHHHHHHTSSHHCCHHHHCCHHH.HHHHTTSTTHHHHHHHHHHHHHHCTS-EEEETTS CS
         OTU   3 DGnCLlravsqqlwgvsdelrkakvseLreklaeylrehseelelfleeeeeg.ylkeiektaawggeleifalahiLrrpIiVlkse 89 
                 D  CL++++s  ++     ++ + + eLr+ + +++ + ++ ++  + ++ +  y+  i  +  wgg +e+ +l++ L++ I+Vl ++
  CCD24316.1 139 DNSCLFHSISYCMY-----NDISLSDELRQLCSRVITQDKTTYNDAILGRPNReYCDWILRKDSWGGGIELAILSKELDMGIYVLDMD 221
                 557**********9.....4444556************9999998887765545******************************6553 PP

>> DUF104  Protein of unknown function DUF104
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.2   7.2e+03      30      48 ..      16      33 ..      15      43 .. 0.72
   2 ?   11.5   0.0   5.1e-05       0.3      15      35 ..      67      89 ..      64     109 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
      DUF104 30 ikIeeakeilkklkgilke 48
                i+Ie+  + l +l g++ke
  CCD24316.1 16 ITIEN-GSNLSQLIGVIKE 33
                78888.7888888888884 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 5.1e-05
      DUF104 15 KPLekvdLkEGeevkikIee..a 35
                KP e++ Lk Ge+v ++Ie   +
  CCD24316.1 67 KPVEELGLKSGERVTLIIEGgaV 89
                9*****************98543 PP

>> DUF3310  Protein of unknwon function (DUF3310)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.8   1.1e+04      16      31 ..     221     237 ..     220     239 .. 0.68
   2 ?   12.0   0.2   3.1e-05      0.19       6      56 ..     245     297 ..     242     301 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.8
     DUF3310  16 dviea.qltgeefkgfc 31 
                 d+i+  ++++e++ +f 
  CCD24316.1 221 DAIKFeKFNDEQYDKFF 237
                 55554578899988876 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.1e-05
     DUF3310   6 HYkkgdiEvidviea.....qltgeefkgfclgNiiKYlsRagkKngeeeDlkKak 56 
                 HY  ++iE id + +       + +e+ + +l Ni+K + R ++K+      +Kak
  CCD24316.1 245 HY--DSIELIDEMTKekltiFDKRDELGDLVLKNILKIAQRLKSKGY-AFNTQKAK 297
                 99..789999999887665534456666*****************99.77777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2246.99
//
Query:       CCD24317.1  [L=169]
Description: hypothetical protein NDAI_0C06580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-10   39.7   5.1    3.9e-10   39.7   5.1    2.0  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
    8.3e-05   22.9   0.1    0.00016   22.0   0.1    1.5  1  zf-C2H2_2     C2H2 type zinc-finger (2 copies)
  ------ inclusion threshold ------
      0.059   12.8   0.1      0.076   12.4   0.1    1.1  1  Cytokin-bind  Cytokinin dehydrogenase 1, FAD and cytokinin bi
      0.065   14.1   1.7        0.1   13.5   0.8    1.9  2  zf-C2H2_4     C2H2-type zinc finger
      0.086   13.1   0.1        0.2   11.9   0.1    1.6  1  zf-AD         Zinc-finger associated domain (zf-AD)
       0.31   11.5   4.4        1.1    9.8   1.0    2.8  3  zf-C2HE       C2HE / C2H2 / C2HC zinc-binding finger


Domain annotation for each model (and alignments):
>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   5.1   1.3e-13   3.9e-10       1      27 []      48      74 ..      48      74 .. 0.99
   2 ?   -1.1   0.1      0.83   2.5e+03      13      21 ..     119     127 ..     117     129 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.3e-13
                 ECBBTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz  1 qfYCvlCdKyFksenaldnHlkSKkHK 27
                 q+YC++C+KyF+++ al++Hlk+K HK
   CCD24317.1 48 QHYCIHCAKYFETAIALKTHLKTKVHK 74
                 8*************************9 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.83
                  SHHHHHCCT CS
  zf-C2H2_jaz  13 senaldnHl 21 
                  +e  l++Hl
   CCD24317.1 119 NETLLKEHL 127
                  8999****8 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   5.2e-08   0.00016      32      81 ..      24      79 ..      14      94 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 5.2e-08
   zf-C2H2_2 32 ylvdleglleylrekiee......kleClyCekefkslealreHmkkkgHckinee 81
                +l+ ++++ + l+++++e      ++ C++C k f++  al++H+k+k H++  +e
  CCD24317.1 24 ELTSKSTIQTLLNQQLDEtkpglgQHYCIHCAKYFETAIALKTHLKTKVHKRRVKE 79
                5666666677777777778888889**************************97554 PP

>> Cytokin-bind  Cytokinin dehydrogenase 1, FAD and cytokinin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   2.5e-05     0.076      71     130 ..      45     111 ..      16     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.5e-05
                   T-SEEEEEEEEEEETTSTHHHHHHHHHHHHTT--S-TT-EEEEEEE.......HHHHHTCCHHHHHH CS
  Cytokin-bind  71 eskvlYclElalyyeekeasevdkeveellkklsfveglvfekdvs.......YvdFLdRVkeeeek 130
                     +  Yc+ +a+y+e++ a + + + +   ++++ ++g+ ++++v+         +FL+RV+e + k
    CCD24317.1  45 GLGQHYCIHCAKYFETAIALKTHLKTKVHKRRVKELKGVPYTQEVAdaaagynLNKFLNRVQEINSK 111
                   45678*********999988888888888899999999999999864444422468*****987665 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.8   3.4e-05       0.1       1      22 [.      49      70 ..      49      72 .. 0.94
   2 ?   -3.8   0.0         6   1.8e+04      16      20 ..     123     127 ..     117     127 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.4e-05
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlkt 22
                ++C +C k F +  aL++Hlkt
  CCD24317.1 49 HYCIHCAKYFETAIALKTHLKT 70
                68******************98 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 6
   zf-C2H2_4  16 LlrHl 20 
                 L+ Hl
  CCD24317.1 123 LKEHL 127
                 45585 PP

>> zf-AD  Zinc-finger associated domain (zf-AD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   6.7e-05       0.2      17      65 ..      22      67 ..      10      76 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.7e-05
       zf-AD 17 fdtsnssislaeileeltglele.pddslpekiCesCleklqefyeFrek 65
                f++     +  + +++l++ +l+ ++++l+++ C+ C + ++ +  +++ 
  CCD24317.1 22 FNEL----TSKSTIQTLLNQQLDeTKPGLGQHYCIHCAKYFETAIALKTH 67
                4444....445899**************************9999887765 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.0   0.00035       1.1      40      62 ..      51      72 ..      14      74 .. 0.81
   2 ?    2.2   0.0     0.082   2.5e+02      53      60 ..     122     129 ..      99     133 .. 0.86
   3 ?   -3.1   0.0       3.7   1.1e+04      14      32 ..     143     161 ..     140     164 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00035
     zf-C2HE 40 CtrCganfgnkfpkLKeHLeeef 62
                C +C  + + +  +LK HL++ +
  CCD24317.1 51 CIHCA-KYFETAIALKTHLKTKV 72
                *****.78888889******976 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.082
     zf-C2HE  53 kLKeHLee 60 
                  LKeHL+e
  CCD24317.1 122 LLKEHLDE 129
                 59999987 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.7
     zf-C2HE  14 elekdgeieslseeqskel 32 
                 + ++ +e +s + +q+++l
  CCD24317.1 143 WAQNTDETSSSNGTQAESL 161
                 6677777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       870  (0.0485247); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1203.28
//
Query:       CCD24318.1  [L=220]
Description: hypothetical protein NDAI_0C06590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.3e-41  140.4   0.1    4.1e-41  140.1   0.1    1.1  1  Ribosomal_L16  Ribosomal protein L16p/L10e


Domain annotation for each model (and alignments):
>> Ribosomal_L16  Ribosomal protein L16p/L10e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   0.1   2.3e-45   4.1e-41       2     132 .]      13     166 ..      12     166 .. 0.97

  Alignments for each domain:
  == domain 1  score: 140.1 bits;  conditional E-value: 2.3e-45
                    XSSXXBSSSXXSSTSXX.XSXXXXXESX...........EEEEESSXEEEEHHHHHHHHHHHCTCCCCTSXC...EEXXSXXXXEEEEE-.....S CS
  Ribosomal_L16   2 krkkyrKsrkryirgvs.tkgtklefgd...........ygLvalekgqltaealeaariainrylkkkrgk...klwirvfphhpvtkk.....a 77 
                    k+k+y+Ksr  y+r v+ +k++++++g+           ++Lv++e +ql++ealeaari++n+y++k +g+   +l++rv+p+h+++++     a
     CCD24318.1  13 KNKPYPKSR--YNRAVPdSKIRIYDLGKkkatvdefplcVHLVSNELEQLSSEALEAARITANKYITKVTGResfHLRVRVHPFHVLRINkmlscA 106
                    89*******..********************************************************9999999********************** PP

                    S-TTTSSSS....XEEEEEEEEEXSSCEEEEE.TTXXXSHHHHHHHHHHHHTSSSXEEEE CS
  Ribosomal_L16  78 gedRmgkGk....Gkpegwvarvkigqiifei.kagvneeiakealrraasKlpiktkiv 132
                    g+dR+++G+    Gkp+g +arv igqiif++  ++ n++++ e lrra++K+p+++ki+
     CCD24318.1 107 GADRLQQGMrgawGKPHGLAARVDIGQIIFSVrTKDNNKDVVIEGLRRARYKFPGQQKII 166
                    ********************************744469********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1716.20
//
Query:       CCD24319.1  [L=650]
Description: hypothetical protein NDAI_0C06600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-22   79.5   0.1    4.2e-05   24.1   0.1    5.4  5  RCC1      Regulator of chromosome condensation (RCC1) repeat
    5.3e-12   45.2   6.4    6.1e-07   29.1   0.1    4.4  4  RCC1_2    Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.48   4.3e+03      32      49 ..     313     330 ..     310     331 .. 0.81
   2 !    7.3   0.0   0.00084       7.5      26      50 .]     397     423 ..     375     423 .. 0.78
   3 !   19.8   0.0     1e-07   0.00091       3      33 ..     428     461 ..     426     487 .. 0.74
   4 !   21.0   0.1   4.4e-08   0.00039       5      34 ..     514     544 ..     513     554 .. 0.86
   5 !   24.1   0.1   4.6e-09   4.2e-05       3      31 ..     575     604 ..     573     619 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.48
                 GTTS-EEEEEEETTEEEE CS
        RCC1  32 lsgnrvvkvacGddhtva 49 
                 l++n++++   Gd+h ++
  CCD24319.1 313 LNENKIIDFDTGDNHLIL 330
                 56679**********765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00084
                 EEE-GGGTTS..-EEEEEEETTEEEEE CS
        RCC1  26 Ptkveglsgn..rvvkvacGddhtval 50 
                 P+  +  ++n   v+k+a+G++h+++l
  CCD24319.1 397 PMSNNHENDNdvFVKKIASGGNHNLVL 423
                 666666666688999*********986 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 1e-07
                 EEEEEE--GGGTTSSSS-...--EEEEEE-GGGT CS
        RCC1   3 rVysWGrndyGqLGlgtt...esvlvPtkvegls 33 
                 r+ys+G+n +Gq G + +   e+ ++P++++ ++
  CCD24319.1 428 RLYSFGWNRFGQVGFPINyqnEEISYPKEISKSR 461
                 89*************99985444499***97655 PP

  == domain 4  score: 21.0 bits;  conditional E-value: 4.4e-08
                 EEEE--GGGTTSSSS-.--EEEEEE-GGGTT CS
        RCC1   5 ysWGrndyGqLGlgtt.esvlvPtkveglsg 34 
                 +s G++ yG LG+g+t ++++ Ptk+++ + 
  CCD24319.1 514 FSLGNGMYGELGNGNTnNCQWEPTKIKFMRT 544
                 89**************5555******99875 PP

  == domain 5  score: 24.1 bits;  conditional E-value: 4.6e-09
                 EEEEEE--GGGTTSSSS-.--EEEEEE-GG CS
        RCC1   3 rVysWGrndyGqLGlgtt.esvlvPtkveg 31 
                 +++sWG nd+GqLG+g++ ++ l+P+ ++ 
  CCD24319.1 575 EILSWGLNDNGQLGNGKEkVKYLKPRNIPK 604
                 689***************777788888854 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.068   6.1e+02       7      20 ..     216     229 ..     209     230 .. 0.76
   2 !    6.8   0.0   0.00068       6.1       2      23 ..     319     340 ..     318     340 .. 0.87
   3 !   29.1   0.1   6.8e-11   6.1e-07       1      30 []     410     439 ..     410     439 .. 0.99
   4 !    8.7   0.6   0.00017       1.5      16      30 .]     572     586 ..     570     586 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.068
      RCC1_2   7 GdyHscaLtedGeV 20 
                 +d+  +aL+++G++
  CCD24319.1 216 NDNINFALDSNGDL 229
                 777789******97 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00068
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcW 23 
                 ++   Gd+H + L++ G+++++
  CCD24319.1 319 IDFDTGDNHLILLSNAGKIYTC 340
                 56668***************97 PP

  == domain 3  score: 29.1 bits;  conditional E-value: 6.8e-11
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 Vk++++G++H ++L++ ++++++G+N +GQ
  CCD24319.1 410 VKKIASGGNHNLVLDSYNRLYSFGWNRFGQ 439
                 89***************************9 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00017
      RCC1_2  16 edGeVlcWGsNsdGQ 30 
                 +d e+l+WG N++GQ
  CCD24319.1 572 NDSEILSWGLNDNGQ 586
                 45679*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.76
# Mc/sec: 2567.38
//
Query:       CCD24320.1  [L=272]
Description: hypothetical protein NDAI_0C06610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-09   36.7   2.6    3.9e-09   36.7   2.6    2.3  2  V-SNARE_C  Snare region anchored in the vesicle membrane C-te
    0.00052   19.9   1.1    0.00052   19.9   1.1    2.9  3  Sec20      Sec20
  ------ inclusion threshold ------
      0.013   14.8   1.8      0.022   14.1   1.8    1.4  1  DUF4407    Domain of unknown function (DUF4407)
        1.2    8.9   9.0       0.22   11.3   4.7    1.9  2  ERM        Ezrin/radixin/moesin family


Domain annotation for each model (and alignments):
>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.45     2e+03      35      48 ..     101     114 ..      88     120 .. 0.51
   2 !   36.7   2.6   8.7e-13   3.9e-09       2      66 .]     182     246 ..     181     246 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.45
   V-SNARE_C  35 retLkrarsklhnv 48 
                 r  L++ +sk++++
  CCD24320.1 101 RKDLEDFQSKFKEL 114
                 34444444444443 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 8.7e-13
   V-SNARE_C   2 rllresdrlknShrivdetisiGaailedLhsQretLkrarsklhnvanrlgksnsiLrsikrRv 66 
                  l++e++  + +++++d  ++ G++ +ed ++Q+  L+ a+++++n   +lg+s +++ si+rRv
  CCD24320.1 182 GLQKEQSIFQKGNNQLDLILEMGYQSFEDIVHQNKILEAAQDRMSNSLRTLGVSEQTIHSINRRV 246
                 58889999999*****************************************************6 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.27   1.2e+03      35      58 ..      38      61 ..       5      71 .. 0.60
   2 ?    1.2   1.0     0.077   3.5e+02      21      55 ..      86     121 ..      66     138 .. 0.71
   3 !   19.9   1.1   1.2e-07   0.00052      13      90 ..     193     269 ..     187     271 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.27
       Sec20 35 tkslekleeeykqvedvlsrskkl 58
                + +l + e   kq +d l+  k++
  CCD24320.1 38 SATLVSFEKSIKQYSDFLKNNKNI 61
                455666666666666666666665 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.077
       Sec20  21 vqqSeenlee.ldastkslekleeeykqvedvlsrs 55 
                  ++S++  ++ l +  k+le+ ++++k+++++ s+s
  CCD24320.1  86 ALESDLKYQNrLLSLRKDLEDFQSKFKELKQIYSQS 121
                 555666554326666789999999999999888776 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 1.2e-07
       Sec20  13 isqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglflacvvyvvkk 90 
                 ++++l    ++  +  e+++++ k le++++   +   +l  s++ + +++rr  +dk++ ++al l+l+  +y++ k
  CCD24320.1 193 GNNQLDLILEMGYQSFEDIVHQNKILEAAQDRMSNSLRTLGVSEQTIHSINRRVFKDKFIFYSAL-LLLFLSMYLIIK 269
                 56666667778888999******************************************999999.667777888776 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.8     5e-06     0.022      96     275 ..      36     265 ..      27     268 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5e-06
     DUF4407  96 sepleLkiFekeIdaelaeeqqeeakelkeqlaaa......................ltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk. 171
                 +   +L+ Fek+I++  ++ +++++ +  ++l+++                      ++++l  l++++++ q++++++++ +++  a  q  l+ +  
  CCD24320.1  36 AISATLVSFEKSIKQYSDFLKNNKNIKKPSSLTSTsiesssasssidkekalesdlkYQNRLLSLRKDLEDFQSKFKELKQIYSQSSARKQ--LFSNNn 132
                 667899***********************************99999999999999997777777777777777777777777776554444..333332 PP

     DUF4407 172 gtgttgvaGkgpaake..............................kkaqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaaad 240
                 +++tt+   + p+  +                                + l++ q   ++ +++   +  l+   +  +++  + +  +aa+++++++ 
  CCD24320.1 133 NSTTTNPFDEDPIINKrnvqtsssprnsysnynntrngngdgsslpLYNGLQKEQSIFQKGNNQ--LDLILEMGYQSFEDIVHQNKILEAAQDRMSNSL 229
                 2223333333333333222222222222222222333333333333344444444444444444..666666777777777777777777777777777 PP

     DUF4407 241 dGllarlealdrltkeda.tallarlllfllflaie 275
                 + l+  ++ ++ + ++     ++++ +l+llfl + 
  CCD24320.1 230 RTLGVSEQTIHSINRRVFkDKFIFYSALLLLFLSMY 265
                 777777777777766555666777777777777665 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   4.7     5e-05      0.22     103     204 ..      10     110 ..       5     119 .. 0.82
   2 ?   -0.2   0.4      0.16   7.3e+02     238     238 ..     124     124 ..     108     245 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5e-05
         ERM 103 eeaerLkeeleeareaeeeakekllealstpskseseenveeseteeeeenseeesaeletdeveklsleieeeRvtylekskrlqeqLkeLkseleql 201
                 +++++L+++l++ ++++  a   l+ a+s++  s +++ ++ s+   +++++ ++ + l++ ++e+ s+++  ++ ++le   + q++L  L+++le+ 
  CCD24320.1  10 KQKNQLQQDLLKFENENLTAPISLQGAISATLVSFEKSIKQYSDF-LKNNKNIKKPSSLTSTSIESSSASSSIDKEKALESDLKYQNRLLSLRKDLEDF 107
                 6789*************************9976644333444444.444455666788999999999******************************87 PP

         ERM 202 kde 204
                 + +
  CCD24320.1 108 QSK 110
                 665 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.16
         ERM 238 q 238
                 +
  CCD24320.1 124 R 124
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1426  (0.0795359); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1842.11
//
Query:       CCD24321.1  [L=350]
Description: hypothetical protein NDAI_0C06620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       965  (0.0538234); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2478.47
//
Query:       CCD24322.1  [L=433]
Description: hypothetical protein NDAI_0C06630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-49  168.7   0.2    1.8e-49  168.1   0.2    1.2  1  Lectin_leg-like  Legume-like lectin family
    0.00015   21.8   0.5    0.00042   20.4   0.5    1.7  1  Bact_lectin      Bacterial lectin


Domain annotation for each model (and alignments):
>> Lectin_leg-like  Legume-like lectin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1   0.2   2.1e-53   1.8e-49      11     226 ..      40     246 ..      32     249 .. 0.92

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 2.1e-53
                      CTSCTC.TTSSBT.TEEEEET-EEESSEEEEE-SSTTEEEEEEESS-BEE.SSEEEEEEEEEESS--SS-S-EEEEEEESSSSS...CCSBTTB CS
  Lectin_leg-like  11 kPylgq.gskalp.nWeyggsaildsnqirltsdeqskkGslwtkspval.eswevevsFrvtgseselegdglaiwytsergk...egpvFgs 98 
                       P l+  +++++p nWe+ +++il++++  lt+  +++kGslw k+p++l +s+++e+ Fr++g  +e  ++gl++w+ s++++   +  +F++
       CCD24322.1  40 LPELIAlKDNTIPpNWEIKDNTILKEGRFILTPT-KNSKGSLWLKKPFNLqDSFTIEWVFRSVGF-KEKSKNGLSFWFISDKTStknDQSLFNG 131
                      46554325666666*******************9.9*************989*************.8899***********998666778**** PP

                      -SS-EEEEEEEE-S-TSCTTTSS-SSEEEEEEEESSC---GGGTTTTTESEEEE---BTESSEEEEEEEEETTEEEEEEETSCCSCCCTTEEEE CS
  Lectin_leg-like  99 kdkfdGlailldtydndngpdkknkptisamlndgsleydhekdgkaqelasCtadfrnkdvetlikikYdknaltvlidsgllenkndyklCf 192
                      + k+dGl+il+d+    n+p   + p i+a+lndg++++ +e + +++++a C+ ++++++v+++i+++Yd+       d+ +l+ ++d+k+Cf
       CCD24322.1 132 PSKYDGLNILVDS----NSP---VGPSIRAQLNDGQVSFKQESI-YENSFAYCLFGYQDSSVPSTIRLTYDR------NDNDFLKLQVDNKVCF 211
                      ************6....656...69*******************.**************************6......8999************ PP

                      EESSEE--SSBE.EEEEEEESSSGGEEEEEEEEEE CS
  Lectin_leg-like 193 qvkevelPtgyy.fgvsaatgdlsdnhdvlsllll 226
                      q+++++lP+++y +gvsa  g+  ++ ++l+++l+
       CCD24322.1 212 QTRKIKLPKDSYkIGVSALVGNNDESFEILKMKLF 246
                      ************************99999999987 PP

>> Bact_lectin  Bacterial lectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.5   4.7e-08   0.00042       9     184 ..      54     233 ..      46     243 .. 0.62

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.7e-08
                  HEEEEET-E...EEEEEE-SSTT-EEEEEESSEEETTS-EEEEEEEE--..S...B.--EEEEEEEST----SGGGTTTTTSTT-EEEEEE-S--..S CS
  Bact_lectin   9 yfnlngtatkkskivtltedkknqaGavtlknkiDlskdFtlkgsvnlg..qsnaggaDGigFalqpgqlGssGgglGigglpnafgfklDtyyNkag 104
                  ++++  ++  k+  + lt++ kn +G+++lk++ +l+ +Ft+++ +     +  ++   G++F + +++  ++  +  ++g ++  g  +    N   
   CCD24322.1  54 NWEIKDNTILKEGRFILTPT-KNSKGSLWLKKPFNLQDSFTIEWVFRSVgfK--EKSKNGLSFWFISDKTSTKNDQSLFNGPSKYDGLNILVDSN--- 145
                  56666655555558999**9.8**********************98877553..33348******998877776666666666666666655556... PP

                  S-EEEEEEE..............-TT-........-SSS--EEEEEEE..-TTT..EEEETHHHT-.............SEEEEEEEEE-SS CS
  Bact_lectin 105 kpygafvktdan.gsletvkss.ssks........ledgkwhpitisYdastkt..tvtyddgsstvsidltkkvtkgktyvafgiaastGg 184
                  +p+g  ++ + n g+++ +++s  ++s        +++    +i+++Yd +++   ++++d    +    +t+k+   k++++ g++a  G+
   CCD24322.1 146 SPVGPSIRAQLNdGQVSFKQESiYENSfayclfgyQDSSVPSTIRLTYDRNDNDflKLQVD----NKVCFQTRKIKLPKDSYKIGVSALVGN 233
                  4555444443220222222222322224677777744445677777777777765544444....123344455555666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3253.21
//
Query:       CCD24323.1  [L=1103]
Description: hypothetical protein NDAI_0C06640, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-35  122.4   2.9    5.2e-35  120.5   2.9    2.1  1  Sir1        Regulatory protein Sir1
    1.1e-10   41.9   0.1    2.9e-10   40.5   0.1    1.7  1  Helicase_C  Helicase conserved C-terminal domain
    1.1e-08   35.0   0.0    1.3e-07   31.6   0.0    2.3  2  DEAD        DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.057   13.4   0.0       0.31   11.0   0.0    2.2  3  ResIII      Type III restriction enzyme, res subunit
       0.11   12.8   0.0       0.42   10.9   0.0    2.0  1  AAA_22      AAA domain


Domain annotation for each model (and alignments):
>> Sir1  Regulatory protein Sir1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   2.9   1.4e-38   5.2e-35       1     120 []       3     128 ..       3     128 .. 0.99

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 1.4e-38
        Sir1   1 kisdryavidgFlVdtekk.....kkiinpktkklkkltkeerekleklklvdldelkk.ysksdlipvdskeLFelveteerefyetedgliivnkrt 93 
                 +is+++++i+gF+V ++k+     +kii++ tk++k ++++ere+l+ + lvd+de+++ +sk+dlip+++keLF++++t e+++y  edg++ivn+rt
  CCD24323.1   3 TISENVVLIEGFIVLKSKDkqgveTKIIRNLTKTSKFFSTWERELLSIQSLVDIDEYQTtHSKCDLIPMPCKELFDYCTTVEKNCYVSEDGYQIVNART 101
                 69************************************************************************************************* PP

        Sir1  94 kkkkrkesievrvipirlkkkkvkYLy 120
                 +k++++ ++++ vip+++k+k++kY+y
  CCD24323.1 102 PKRFHQLAQKYLVIPLYCKHKRTKYFY 128
                 *************************98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.1     8e-14   2.9e-10      12      93 ..    1021    1098 ..    1011    1102 .. 0.86

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 8e-14
                  HTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSS CS
  Helicase_C   12 leeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesdvLiatdvaerGidipkvnlVinfdl 93  
                  +   ++k++i+++ + ++e  kl    +   +  +hg+lp++e+++  ++f  +++++++i t+ +++Gidi+ v+lVi++d+
  CCD24323.1 1021 EYDTKSKVIIVCKEKVTVE--KLY---FRQDSEWVHGDLPSEEKIKKSRRFIeDEKCRIMIGTKLVSEGIDIKAVKLVIMLDY 1098
                  567889************5..444...6678999*****************8578899**********************997 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.17   6.1e+02      51      72 ..     185     206 ..     161     218 .. 0.82
   2 !   31.6   0.0   3.6e-11   1.3e-07       8     169 ..     794     952 ..     790     957 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.17
                 EEEESSHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  51 livePtreLaeqtlnnlkkfkk 72 
                  ++e t+eL  q++++++++ +
  CCD24323.1 185 QFIESTHELFLQIYSTVRQRYH 206
                 57999************99865 PP

  == domain 2  score: 31.6 bits;  conditional E-value: 3.6e-11
                 HHHHHTTCEEE.EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   8 iplilgggdvl.vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtp 105
                 +++ l+g +++ ++a  G GKT+ f+ip+++  y   g++++  ++ +P   L  ++  +l++++ ++++   l+++g a  ++++     +d++vgt 
  CCD24323.1 794 VEIYLSGTQIIpIQALPGFGKTALFQIPLVALSY---GEQKTVSFVFVPYVCLLSNMKLRLSSSGINCGILKDLFVNGPAV-EEKNL---FCDVYVGTF 885
                 56677777777799****************8887...788889************************99777788888777.33333...49******* PP

                 HHHHH.HH....HCTSSHCTTE..EEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxx.xx....xxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 106 grldd.ll....stgklnlsqv..rflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                   l +  +    ++ +  ++++   ++V+DE ++l  + +++ +  r++ +++      +l  +v+v++ T+
  CCD24323.1 886 NDLGSeNFvrlvNNWYNIYQDCilGMIVIDEFHNLETEqSYRGQSFRLIPEIN-----FNLAWKVVVVTGTA 952
                 66666322344355553377765588*********988688888888777773.....33444577777775 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.8   6.4e+03      31      70 ..     535     574 ..     527     597 .. 0.66
   2 ?   11.0   0.0   8.6e-05      0.31      26     151 ..     803     927 ..     782     953 .. 0.74
   3 ?   -3.3   0.1       2.2   7.9e+03      46      69 ..    1017    1040 ..     992    1077 .. 0.54

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.8
                 ESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHH CS
      ResIII  31 maTGtGKTlvaaklierllkkgkeekflflvprkslleqt 70 
                 + T   KT++a  l+++l kk +   f  +   +++l+ +
  CCD24323.1 535 IITSYSKTRTANYLCKSLDKKTSDYLFYYIFVARAVLKHA 574
                 5555569999999999999998776555555445555544 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 8.6e-05
                 EEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH..... CS
      ResIII  26 rglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee.. 121
                  + i++  G GKT +  + l++  + ++k    +++vp   ll+ ++ ++++   ++   +  +v+g   ++   ++  ++++v t + l +++  +  
  CCD24323.1 803 IIPIQALPGFGKTALFqIPLVALSYGEQKTVS-FVFVPYVCLLSNMKLRLSSSGINCGILKDLFVNGPAVEE---KNLFCDVYVGTFNDLGSENFVRlv 897
                 44588889*****9998888888777766544.4568*************9999999755666677777777...88889************9966677 PP

                 .....HHHTTT-SEEEEETGGGTTS.TTTH CS
      ResIII 122 eeeseellrdrfdviiiDEaHrlgakkswr 151
                 +++ + +++    +i+iDE H+l  ++s+r
  CCD24323.1 898 NNWYNIYQDCILGMIVIDEFHNLETEQSYR 927
                 7777777777777***********986554 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.2
                  HHH-S.....-EEEEESSHHHHHH CS
      ResIII   46 erllkkgkeekflflvprkslleq 69  
                  +r+++   ++k+++++ +k  +e+
  CCD24323.1 1017 DRFMEYDTKSKVIIVCKEKVTVEK 1040
                  333333333344444444433333 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.42       7     106 ..     803     922 ..     797     949 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevv...fvtlpsst....sskdllrellralglelka..................erlsseelle 80 
                 i+ + + +G GKT l +  l  l  + +++   +++v   +v+l s +    ss+ +   +l++l +++ a                     +  +l++
  CCD24323.1 803 IIPIQALPGFGKTALFQIPLVALS-YGEQK--TVSFVfvpYVCLLSNMklrlSSSGINCGILKDLFVNGPAveeknlfcdvyvgtfndlGSENFVRLVN 898
                 555666777777777776555552.22222..2222233444444444455555555555555555555555555555555555552222236666666 PP

      AAA_22  81 aleqalraravielliiDEaqhlrse 106
                   ++  +++   ++++iDE+++l   
  CCD24323.1 899 NWYNIYQDCIL-GMIVIDEFHNLE-T 922
                 66666666666.***********5.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       453  (0.0252663); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 7500.31
//
Query:       CCD24324.1  [L=188]
Description: hypothetical protein NDAI_0D00100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.33   11.0   0.0    1.7  2  DUF3288   Protein of unknown function (DUF3288)


Domain annotation for each model (and alignments):
>> DUF3288  Protein of unknown function (DUF3288)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.16   2.8e+03      54      69 ..      48      63 ..      42      90 .. 0.59
   2 ?   11.0   0.0   1.8e-05      0.33      30      84 ..      96     154 ..      72     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.16
     DUF3288 54 lkkWqlteeeLfektr 69
                 + W++ ++++ +  r
  CCD24324.1 48 AQVWGMPNDTIVATDR 63
                5667776666665444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 1.8e-05
     DUF3288  30 lArLliRYegFpGardiqkdldkvlkkWql....teeeLfektreihaekkvykskkdk 84 
                 lA  +  Y+ FpG+      ld  l++W+l     ++eL ++t++  ++++++ s+kd+
  CCD24324.1  96 LAFTHYNYKYFPGELTHICTLDDALRNWDLlptfARNELIAETQRGPTSTSTFISHKDT 154
                 6666778*********************9744446899999998876666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       727  (0.0405488); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1404.61
//
Query:       CCD24325.1  [L=381]
Description: hypothetical protein NDAI_0D00110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-13   50.9   5.6    4.7e-13   48.8   5.6    1.8  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.028   14.2   0.4       0.06   13.2   0.4    1.5  1  T6PP_N    Trehalose-6-phosphate phosphatase N-terminal helica
        3.9    7.7   6.3        1.8    8.7   1.8    2.4  3  DUF1542   Domain of Unknown Function (DUF1542)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   5.6   7.9e-17   4.7e-13       6     225 ..     112     330 ..     107     353 .. 0.76

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 7.9e-17
       MFS_1   6 flsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalf 103
                 fl + + ++l+ a    l ed +++   ++ ++tl+++g++v+   l + +++f  r v++++ +++ +  ll + +a +++ +++lr++ G+ +++++
  CCD24325.1 112 FLLYSDKATLSYASIFELWEDTHLTQNRYNNATTLFYVGYIVGLTNLLW-VQKFPIRNVMIFMCTSWTIItLLHC-VAYNYYGIYALRFFLGFVEAIAV 208
                 677777777777777799**********************999877755.5***888888888888888823333.4699999**************** PP

       MFS_1 104 pagaaliadwfpkeergrai.gllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee............. 188
                 p+ ++ + +  +++e++ +   ++s+++++G+         +     W + ++i++++++l+ +++++ +p +p++ k  s++e+              
  CCD24325.1 209 PTLNITMNQFLTPNEKNVYApIFYSSCMGCGIFRF------FD--CIWKLFMIIIGGMTFLMTMVVYFIYPSNPTDAKFLSKEEKVwvirrvqkssnss 299
                 *************8888777466777777776433......22..24*****************999***99999999999999989998876666655 PP

       MFS_1 189 .kgtgpaplvp......awkallkdpvlwillialllfffgfsg 225
                  +        +       + + ++dp  w l++a++lf    ++
  CCD24325.1 300 iE--------QkyskkyQIIEAFRDPITW-LFCAFFLF----QQ 330
                 31........1333334355588888555.55555554....33 PP

>> T6PP_N  Trehalose-6-phosphate phosphatase N-terminal helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4     1e-05      0.06      26      91 ..      56     121 ..      54     128 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1e-05
      T6PP_N  26 gieirehfvesLknakesLeadcetgtevlelrtteeekvrldikdEieeLekDlkFLefiqsdev 91 
                  ++i+++ v+sLk+a  +L    e++t+v+e+r+tee+k+r  +   i  L+  + FL + ++ + 
  CCD24325.1  56 SKHITKRKVISLKDADITLAFMVENDTFVREIRQTEERKLRRKVALIIVSLTATIDFLLYSDKATL 121
                 589**************************************9999999999999999987776655 PP

>> DUF1542  Domain of Unknown Function (DUF1542)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.8    0.0003       1.8      12      44 ..      38      70 ..      36      74 .. 0.87
   2 ?   -3.7   0.0       2.2   1.3e+04      20      32 ..     213     225 ..     212     226 .. 0.79
   3 ?    0.2   0.0      0.14   8.3e+02       4      21 ..     295     312 ..     280     318 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0003
     DUF1542 12 aaeekkaeInnnpnaTdeEKqaainkvnaalne 44
                + e+ +++I+n++++++e K + + kv  +++ 
  CCD24325.1 38 KNEANIETIENDSELSTESKHITKRKVISLKDA 70
                568899********************9888776 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.2
     DUF1542  20 InnnpnaTdeEKq 32 
                 I  n+ +T +EK+
  CCD24325.1 213 ITMNQFLTPNEKN 225
                 6667889999997 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.14
     DUF1542   4 kAkaaidkaaeekkaeIn 21 
                   +++i++++ +k + I+
  CCD24325.1 295 SSNSSIEQKYSKKYQIIE 312
                 344455555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1158  (0.0645881); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2812.11
//
Query:       CCD24326.1  [L=767]
Description: hypothetical protein NDAI_0D00120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-66  224.5   0.0    2.1e-66  224.0   0.0    1.2  1  Sec23_trunk     Sec23/Sec24 trunk domain
    1.3e-26   93.2   0.2    2.9e-26   92.0   0.2    1.7  1  Sec23_BS        Sec23/Sec24 beta-sandwich domain
    2.3e-23   82.0   0.3    9.1e-23   80.0   0.1    2.1  2  Sec23_helical   Sec23/Sec24 helical domain
    3.5e-11   42.9   0.0    7.1e-11   41.9   0.0    1.5  1  Gelsolin        Gelsolin repeat
    1.3e-08   34.8   8.8    3.4e-08   33.4   8.8    1.8  1  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
  ------ inclusion threshold ------
      0.038   13.4   1.6      0.083   12.3   1.6    1.5  1  Vps36-NZF-N     Vacuolar protein sorting 36 NZF-N zinc-finger


Domain annotation for each model (and alignments):
>> Sec23_trunk  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.0   0.0   6.9e-70   2.1e-66       2     243 .]     122     385 ..     121     385 .. 0.97

  Alignments for each domain:
  == domain 1  score: 224.0 bits;  conditional E-value: 6.9e-70
                  S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHCTTSSTSTT-EEEEEEESSSEEEEETSTTS.......SSSEEEEECHTTSCC............... CS
  Sec23_trunk   2 kppvflFviDvsleaikegelkalkeslkqsLdllPeepralvglitfdsvvhffelksel.......rqpkelvvsdlqdvf............... 77 
                   pp+f+FviD+ +e   +++l+al +s+ +sL+llP  p+a +glit++++v++++++++        r++ke+++sdl+ ++               
   CCD24326.1 122 VPPIFFFVIDLNIE---KDNLEALRQSISTSLSLLP--PNAMIGLITYNNIVQLHDFSPSPinkcnvfRGDKEYTLSDLTKILtgtntpnnmgnipsa 214
                  69*********999...*******************..*********************9999*********************************** PP

                  ...SSTSSSSSEETTTTHHHHHHHHHHHHH.HSTT-TTC-----HHHHHHHHHHHHCHCT..S-EEEEEEESS---SSTTTSS-SBTTS...CCTSST CS
  Sec23_trunk  78 ...lpladrlLvplseseavledlLeelpe.mfavtagkrperalgpalkaavellkave..tggkiivfvgslptvgaggklksrede...slldid 166
                       + +r+++pl+++e++l+++Le++    ++ ++g+rp r +g+al++a  ll++++  ++++ii+f++++ t+ +g +++ ++++   s++did
   CCD24326.1 215 aptNNSLNRFFLPLEQIEFKLNQILENVIAdNWPIPNGHRPLRGTGSALNIATLLLQGCYknAAARIILFASGPGTMAPGLIVSPELKDplrSHHDID 312
                  9865566********************8888****************************9999************************999******** PP

                  TCHHCHSCSSSCHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHHHHTTT-EEEEETTTCCHHHHHHHHHHHHHHH CS
  Sec23_trunk 167 kekaklvkkadkfYkkLakecvkqgisvDlFlfsldyvdlaelkqlaeltgGqvvlydsFsaekdasklkqdlkrvv 243
                  +e+a+++kka+k Y++L++++v++g++vD+F+++ d++++ e+++l+++tgG+++l+dsFs    + ++kq++ r +
   CCD24326.1 313 SENASHYKKACKYYSQLTDRVVENGHTVDIFAGCYDQIGMSEMQKLTDSTGGVLLLTDSFS----TAIFKQSYLRLF 385
                  *************************************************************....*******99875 PP

>> Sec23_BS  Sec23/Sec24 beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.2   9.6e-30   2.9e-26       1      95 [.     396     507 ..     396     508 .. 0.96

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 9.6e-30
                 EEEEEEEEEE-TTEEEEEEESSSEEC.....STBESSEESECSESEEEEEEEETT--EEEEEEE............SSBTCTTSEEEEEEEEEEEETTS CS
    Sec23_BS   1 gfnatlevrtSkelkvsgliGncvsl.....snvsekeiGeggtsewklcsldpdstlavyfdi............deklksgkqayiQfatlYthssg 82 
                 +fn++l v+t ++lk+ gliG++        +n+s+++iG+ggts+wk+++l+p++t+a+yfd+            ++ +++++qa+iQ++t Y+h+sg
  CCD24326.1 396 AFNGELCVKTNNKLKLHGLIGHAAPVkktdaKNISDTQIGIGGTSTWKMAALSPHHTYAIYFDVmsmdvangnangNAMNQQQSQAFIQIITNYQHASG 494
                 69*********************9998888879*****************************************997789999**************** PP

                 EEEEEEEEEEEEE CS
    Sec23_BS  83 errlRVttvalpv 95 
                   r+RVtt+a +v
  CCD24326.1 495 YHRTRVTTIANNV 507
                 *********9987 PP

>> Sec23_helical  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.2   3.5e+03      23      44 ..     472     493 ..     457     508 .. 0.74
   2 !   80.0   0.1     3e-26   9.1e-23       1     102 [.     523     621 ..     523     622 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.2
                    HHHHHHHHHHHHHHHHHHHHH- CS
  Sec23_helical  23 adarealdtslvdllsayrkvg 44 
                    +++ ++  +  ++++++y++++
     CCD24326.1 472 NAMNQQQSQAFIQIITNYQHAS 493
                    5566777788999999999887 PP

  == domain 2  score: 80.0 bits;  conditional E-value: 3e-26
                    -HHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHHH-------------GGGTTHHHHHHHHHTSTTTS-.-TT--HHHHHHHHHHHHH CS
  Sec23_helical   1 DqeavtvllakqaidkalesgladarealdtslvdllsayrkvgasgsspsqlqlpeslklLPlyilallKspafrg.gnsvpaDervfalsllls 95 
                    Dqea++vl+a+ a+ ++   +  ++ +++dt+ +++++ y ++ ++  +p++++l++++ l+P++i++l++s+ f++ +n++p De++f+++++ +
     CCD24326.1 523 DQEAAIVLMARIAVFRTNFDDALSIAKWIDTTSIKFCKMYADYNKN--DPESFRLAANFTLYPQFIYYLRRSQ-FLSvFNNSP-DETAFYRHIFTR 614
                    9****************9889999********************87..*************************.7777*****.************ PP

                    --HHHHH CS
  Sec23_helical  96 lpvdqll 102
                    ++++++l
     CCD24326.1 615 EDTTNSL 621
                    ***9997 PP

>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   2.4e-14   7.1e-11       4      76 .]     636     723 ..     634     723 .. 0.97

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 2.4e-14
                 EEEEBSSSGGGEETTSEEEEEESS........EEEEEEHTT..SHHHHHHHHHHHHHHHH.....HCTTTTTSEEEEEETTHHHHHHH CS
    Gelsolin   4 lpkvvklsssslesgdcyLLdngf........tiflWiGke..ssqeeknfaadlaaeld.....seerfplpeliredqgkeparFl 76 
                  p++v+l+s s+ ++ ++LLd++f        +i++W++++  +++e++ f+ +l+++         +rfplp++i ++ g+++arFl
  CCD24326.1 636 DPQPVLLDSISVRPNTILLLDTFFfiliyhgeQIAQWRKAGyqDQPEYSDFKSLLEEPKLdaadiLVDRFPLPRFIDTEAGGSQARFL 723
                 599*******************************************************999****9999******************7 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   8.8   1.1e-11   3.4e-08       1      39 []      55      95 ..      55      95 .. 0.96

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.1e-11
  zf-Sec23_Sec24  1 PirCrr..CraylNpfckidfggkrwiCnfCnhknevppeY 39
                    P+ C++  C+a+ Np+c i  ++++w+C++C   n++  +Y
      CCD24326.1 55 PVVCSTphCKAIFNPYCAINTNNNTWTCPLCLGGNNLRTNY 95
                    899********************************999888 PP

>> Vps36-NZF-N  Vacuolar protein sorting 36 NZF-N zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.6   2.8e-05     0.083       6      34 ..      76     104 ..      72     106 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
  Vps36-NZF-N   6 vtatWvCpICsfsNevpsnfdpnastplP 34 
                   + tW+Cp C   N++++n++   ++++P
   CCD24326.1  76 NNNTWTCPLCLGGNNLRTNYSNMTQETMP 104
                  589*****************965555666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5561.44
//
Query:       CCD24327.1  [L=353]
Description: hypothetical protein NDAI_0D00130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-43  150.1  37.7    3.3e-41  141.8  37.7    2.1  1  NBP1      Fungal Nap binding protein NBP1
  ------ inclusion threshold ------
      0.016   15.8   6.9        1.7    9.2   0.2    2.4  2  DUF1645   Protein of unknown function (DUF1645)


Domain annotation for each model (and alignments):
>> NBP1  Fungal Nap binding protein NBP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8  37.7   3.7e-45   3.3e-41       1     338 [.       1     350 [.       1     351 [. 0.73

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 3.7e-45
        NBP1   1 Mlesvkklvkdffg.....keeeDgRkkeYgsLeevkrrrrkrrkkrekessrn..............................rnssrskrikkvskk 64 
                 M++ +++l++d+f+      + e +R++ +    e +++rr+ r++r+ ++++                               r  + ++  +  +++
  CCD24327.1   1 MFQAMRQLLNDLFNkngskSSIERQRRSRH----EARKNRRNIRHERSTRQNKYgtprpnynecrrrsvihhdisdfaagesdaRRLHARNTPQPYENA 95 
                 9************87664322222333334....45555555444444443333888899999999999999999887765444333333333333333 PP

        NBP1  65 kseralrkkrrnsvekkrkkkpkkksslrsllesiksvFsneeqdlkrmknasenlnallpseelksreerkklkdrilrseaFkkkllelkydkqmle 163
                  +++ ++ +r    +  +++++ +k++ +++l s+k vFs+ee+dl ++k+++ n+++++p++++    e++ +++r+++seaFk+kl+e++ydk++l+
  CCD24327.1  96 LARKSINRHRIS--KPIIAHNKLSKNKGSTFLASLKRVFSSEEEDLLKLKETCDNITKIIPHNKHLRSDEQSIIRNRVVQSEAFKRKLKEIQYDKTLLQ 192
                 333333333333..334445557888889********************************************************************** PP

        NBP1 164 qLrrgrssnkserr...vslrnnnleeDqvvlLqkkikklesklkdlekeLeitkkkLkFakeknkLleslLddanidseYvksRrdiknlqkenlkpe 259
                 qL+ ++     + +   ++  + n+ +D+v+lL  k+++l++ l++++keL+i+kk+L+Fa+ek +Ll+slL d   d+     +rd+++    n    
  CCD24327.1 193 QLQGTKLVDDISTKknyNKNVSGNISDDRVFLLVEKNRELNQTLNETTKELNIIKKNLRFANEKIRLLQSLLSDVDDDHVIWDKKRDVTD----N---- 283
                 ***998766666553555566779************************************************997666666666777654....3.... PP

        NBP1 260 eeLppspkrtvnplftSSPmrkenteeeeksevgekktdefYnkY.pkipeteeLkkkddeddkeeeSLSPiriDyskYs 338
                    p+  +r+ n   t    ++++++ ++ s+      ++ Y+ +  + p + + ++     +++++SLSPiriD++kYs
  CCD24327.1 284 --YPKLTSRKENADATARGRNENQRRYNNLSD------NKIYKNDfDSFPHSVNETQ-----KRNNDSLSPIRIDFTKYS 350
                 ..455677888888776555543333333333......4555554477776654444.....7889*************9 PP

>> DUF1645  Protein of unknown function (DUF1645)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.0   0.00028       2.5     138     189 ..      14      65 ..       8      66 .. 0.90
   2 ?    9.2   0.2   0.00019       1.7       5      70 ..     252     345 ..     251     352 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00028
     DUF1645 138 aknsssrskesasksksasgsakrrrgtvasahelhYtanraaaeemkrrTf 189
                 +kn s++s e++++s++++++ +r+ + + s ++  Y + r   +e +rr++
  CCD24327.1  14 NKNGSKSSIERQRRSRHEARKNRRNIRHERSTRQNKYGTPRPNYNECRRRSV 65 
                 57788888888889999999999999************************97 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00019
     DUF1645   5 FdnGqIrPlkppphl..........akkkplldleeeeeeeeeeeaeeeeergrdlklrsrsv......................rrkarslsPlrve 70 
                 F+n +Ir l+ +  l           kk++ +d  ++   +++e ++++ +rgr+ ++r+ ++                      +r+ +slsP+r++
  CCD24327.1 252 FANEKIRLLQSL--LsdvdddhviwDKKRDVTDNYPKLT-SRKE-NADATARGRNENQRRYNNlsdnkiykndfdsfphsvnetqKRNNDSLSPIRID 345
                 899999999987..5567888888532222223322222.2222.344447888777666665778888999999999999999999*******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1362  (0.0759663); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2601.58
//
Query:       CCD24328.1  [L=163]
Description: hypothetical protein NDAI_0D00140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-17   61.0   0.0      2e-16   60.0   0.0    1.5  2  Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
  ------ inclusion threshold ------
        1.9    8.4   4.3        0.8    9.5   0.2    2.3  3  DBD_HTH         Putative DNA-binding domain


Domain annotation for each model (and alignments):
>> Putative_PNPOx  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   2.2e-20     2e-16       2      73 ..       8      89 ..       7      99 .. 0.93
   2 ?   -3.8   0.0       1.7   1.6e+04      74      85 ..     128     139 ..     122     141 .. 0.62

  Alignments for each domain:
  == domain 1  score: 60.0 bits;  conditional E-value: 2.2e-20
                    HHHHHHHHHHSSEEEEEEEETTSEEEEEEEEEEEETTT..........TEEEEEEETTSHHHHHHHHH-EEEEEEEETTGSE CS
  Putative_PNPOx  2 deelreflaeskavvlATvdedGrPnvspvllkagdgr..........dgivfatnadsrklrnleenprvallflddelgr 73
                    +++l++++++sk+v++AT + dG P+vs++++++ +++          d+i++at  d++k++n+ +npr++llf+d+ + +
      CCD24328.1  8 PKQLLDLIKTSKYVHVATSSIDGIPSVSLMNYIYVPREknyspniddkDYIILATFDDTEKYENIVNNPRISLLFHDWITAN 89
                    67899*************************************************************************9433 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.7
                     EEEEEEEEEEES CS
  Putative_PNPOx  74 gvrieGtaelvs 85 
                     + +i+G ae+++
      CCD24328.1 128 SATIKGFAEVLD 139
                     456677777765 PP

>> DBD_HTH  Putative DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.15   1.3e+03      15      24 ..      52      61 ..      51      64 .. 0.81
   2 ?   -1.8   0.1      0.31   2.8e+03      12      19 ..      60      67 ..      58      67 .. 0.81
   3 ?    9.5   0.2   8.9e-05       0.8       7      30 ..     111     134 ..     110     137 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.15
     DBD_HTH 15 ldDkeLsiie 24
                 dDk+ +i++
  CCD24328.1 52 IDDKDYIILA 61
                79***99875 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.31
     DBD_HTH 12 LDsldDke 19
                L ++dD+e
  CCD24328.1 60 LATFDDTE 67
                679***98 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 8.9e-05
     DBD_HTH   7 qLdklLDsldDkeLsiieatakGI 30 
                 +L +lL  l+ +eL  + at+kG 
  CCD24328.1 111 RLNNLLEDLNQDELNQMSATIKGF 134
                 899********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1162.69
//
Query:       CCD24329.1  [L=337]
Description: hypothetical protein NDAI_0D00150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-17   62.3   0.1    1.2e-16   60.9   0.1    1.8  1  PWWP      PWWP domain
  ------ inclusion threshold ------
      0.017   15.2   0.0      0.037   14.0   0.0    1.7  1  Med26     TFIIS helical bundle-like domain
        9.7    6.6  10.2         33    5.0  10.2    2.0  1  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-


Domain annotation for each model (and alignments):
>> PWWP  PWWP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.1     2e-20   1.2e-16       1      94 [.      10     101 ..      10     103 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 2e-20
                 SSTTEEEEEEESSSEEEEEEEEECCCCCCCCHCT---SSSEEEEEETTTTEEEEE-GGGEEE-SHHHHHHHHHTTSS-HHHHHHHHHHHHHHHH CS
        PWWP   1 fqpgdlvwakvkgypwWPavvidpeevpekvlkkkekskelylVkFfgdkeyawvkekdlkpfteedeeeylkkkkkkkskkkfkkAleeaeea 94 
                 f+ gdlv++kv+++p+WPa+v++++ ++++v kk++ +   + V Ff+d +y+w ++++l+p+++  ++++lk++ k+  +k++ +A+++a ++
  CCD24329.1  10 FKTGDLVLCKVGSFPPWPAIVFPQRLLRNDVYKKRKLNC--VAVCFFNDPTYYWEQPHRLRPLNKTIINQFLKEGYKNVTQKDLIEAYKQASKY 101
                 789****************************99888766..**************************************************986 PP

>> Med26  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.2e-06     0.037      10      53 .]     262     305 ..     248     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.2e-06
                 .....HHHHHHSHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHH CS
       Med26  10 pi.ttetLkstgIGkvVnalrkhkhetaevktlAksLvekWkkav 53 
                 p  ++e Lk ++I k  + + +++   +e +  +k++++kW++++
  CCD24329.1 262 PFfDVESLKHSKIYKLLKVIVNNDD-LEEFHPICKDILNKWSSLI 305
                 44699***************97655.99*************9876 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  10.2    0.0055        33      10      50 ..     140     181 ..     134     227 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0055
     PBP1_TM  10 GRkGkkakakpar.kkasrrrrrdddyddeyddeedDddddd 50 
                 G+kG  ++ k +  +++s+rr+    yd + dde+dD d  +
  CCD24329.1 140 GKKGDGRNLKVTAvAQRSKRRKSTHAYDKDDDDESDDTDSAE 181
                 888877776654414555556668899997788888877433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1433  (0.0799264); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 2294.31
//
Query:       CCD24330.1  [L=85]
Description: hypothetical protein NDAI_0D00160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.4   0.6      0.024   14.9   0.6    1.2  1  DUF4064   Protein of unknown function (DUF4064)
      0.045   13.8   1.2        4.4    7.4   0.2    2.1  2  DUF997    Protein of unknown function (DUF997)
      0.049   13.3   0.2      0.053   13.2   0.2    1.0  1  DUF4131   Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.6     4e-06     0.024      10      73 ..      11      71 ..      10      78 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4e-06
     DUF4064 10 lIGgilgillglllllflfllssgefsqelteeqalsgedasavleflstllivlgvialiaiv 73
                + + il+++++++l +++ l +++ +s+     ++++ ed +av++ ++   +v++++++++++
  CCD24330.1 11 WFCTILSAFGVVILSVIAYLFNNNHESFVG---SINDPEDGPAVAHTVFLAALVYLIFFVFCGF 71
                8899*****************999999888...7899999999999999999999999988875 PP

>> DUF997  Protein of unknown function (DUF997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0029        17       6      31 ..      10      35 ..       8      45 .. 0.81
   2 ?    7.4   0.2   0.00074       4.4       8      28 ..      54      74 ..      52      83 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0029
      DUF997  6 alltllltllyflwwllfaYglgske 31
                a+++ +l ++ +++  + aY++++++
  CCD24330.1 10 AWFCTILSAFGVVILSVIAYLFNNNH 35
                67888999999999999999999776 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00074
      DUF997  8 ltllltllyflwwllfaYglg 28
                  +l++l+y+++++++++ l 
  CCD24330.1 54 TVFLAALVYLIFFVFCGFQLY 74
                567889999999999999876 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   8.9e-06     0.053       5      55 ..      12      79 ..       7      85 .] 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.9e-06
     DUF4131  5 lalvllalllllllllllllrr.................rprrrvllllllllllallgfalrapqpn 55
                +  +l a+++++l ++++l+++                   +  +l++l +l+++++ gf+l++ ++ 
  CCD24330.1 12 FCTILSAFGVVILSVIAYLFNNnhesfvgsindpedgpaVAHTVFLAALVYLIFFVFCGFQLYVGRKK 79
                444555555555555555555589********999999999999999999999999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 623.94
//
Query:       CCD24331.1  [L=165]
Description: hypothetical protein NDAI_0D00170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-38  131.4   0.4    2.4e-38  130.8   0.4    1.3  1  Med10           Transcription factor subunit Med10 of Mediato
  ------ inclusion threshold ------
      0.076   11.6   0.8      0.096   11.3   0.8    1.2  1  FapA            Flagellar Assembly Protein A
       0.15   12.6   2.5       0.68   10.5   0.2    2.7  3  EF-G-binding_N  Elongation factor G-binding protein, N-termin
       0.16   12.3   4.6       0.52   10.6   0.1    2.7  3  GAT             GAT domain
       0.19   12.4   2.4        7.9    7.2   0.0    2.7  2  DUF2203         Uncharacterized conserved protein (DUF2203)
       0.78   10.4   5.4         41    4.9   0.6    3.1  3  DUF4404         Domain of unknown function (DUF4404)
        1.5    9.3   7.1         29    5.2   1.5    3.0  2  NPV_P10         Nucleopolyhedrovirus P10 protein
        1.9    8.9   5.1       0.49   10.8   0.3    2.1  2  RIC3            Resistance to inhibitors of cholinesterase ho


Domain annotation for each model (and alignments):
>> Med10  Transcription factor subunit Med10 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.4   1.1e-41   2.4e-38       1     120 [.      33     155 ..      33     156 .. 0.98

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 1.1e-41
                 HHHHHHHHHHHHHHHHHHHS--TT.S-TTHHHHHHHHHHHHHHHHHHHHH.....HH--EEEHHHHHHHHTTB-HHHHHHHHHHHHHHHHHHHHHHHHH CS
       Med10   1 eqqlkeviqsllelgvqvsdydenessqevlaqklktlvesLqelsktaskl...lqdikiPlelieyvenGrNPdiYtrefvelvrrkNqlmkGkmea 96 
                 eqq+ ++i+s++elgv ++d+ ++++ ++ + ++lk+ v++L++l++ ++++   l++i+iP e+++y+e+GrNPdiYtrefve++rr+Nq++++km++
  CCD24331.1  33 EQQVGSIIESFIELGVSIYDFPGTDEGTQGMITNLKRNVDRLAKLNQRSNDPtsqLNNISIPFEVFQYIEDGRNPDIYTREFVEAIRRSNQYQRAKMNS 131
                 79************************************************9999999****************************************** PP

                 HHHHHHHHHHHHHHH-GGGHHHHH CS
       Med10  97 fkkfrdvLaeelekalPelredve 120
                 +k++rd Lae++++++P+++++v+
  CCD24331.1 132 LKQLRDSLAEKITEEFPDMENNVK 155
                 *********************997 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.8   4.3e-05     0.096     314     415 ..      34     153 ..      14     162 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.3e-05
        FapA 314 kklGselgtkteiev.gldepelkeklkeleeeleeleeeleklkkk.................ikklpklkaekqlesekkeqlkklletkeklkeel 394
                 +++Gs +++ +e+ v   d+p ++e ++ + ++l++  ++l kl+++                 ++ +++ ++++ ++ e+ e + +  +++ + +++l
  CCD24331.1  34 QQVGSIIESFIELGVsIYDFPGTDEGTQGMITNLKRNVDRLAKLNQRsndptsqlnnisipfevFQYIEDGRNPDIYTREFVEAIRRSNQYQRAKMNSL 132
                 48999999999999989999999***9999999999999999999999999999999999988888888888888888888888777777777777777 PP

        FapA 395 eeleeelk.elkeeleskkeea 415
                 ++l++ l+ ++ ee+ ++ e++
  CCD24331.1 133 KQLRDSLAeKITEEFPDM-ENN 153
                 777777776777777666.343 PP

>> EF-G-binding_N  Elongation factor G-binding protein, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.5   3.3e+03      66      75 ..      20      29 ..      10      45 .. 0.56
   2 ?    1.9   0.1      0.15   3.3e+02      10      67 ..      67     126 ..      65     135 .. 0.62
   3 ?   10.5   0.2    0.0003      0.68      29      58 ..     131     160 ..     121     165 .] 0.87

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
  EF-G-binding_N 66 ekaeklLeeL 75
                    e+ ekl eeL
      CCD24331.1 20 ETLEKLHEEL 29
                    3333333333 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.15
  EF-G-binding_N  10 IkkqveqllnayrsvnDkkvveavkalaaekIlelfpelseeq...kelLeqiddiktkek 67 
                     +k+ v+ l +  + +nD+   +    ++  ++++  ++  + +   +e++e+i   ++ ++
      CCD24331.1  67 LKRNVDRLAKLNQRSNDPT-SQLNNISIPFEVFQYIEDGRNPDiytREFVEAIRRSNQYQR 126
                     5888899999999999985.45555566666666655433332344777777776664444 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.0003
  EF-G-binding_N  29 vveavkalaaekIlelfpelseeqkelLeq 58 
                      ++ +++++aekI+e fp+++++ k++L+ 
      CCD24331.1 131 SLKQLRDSLAEKITEEFPDMENNVKDILQR 160
                     678899*********************964 PP

>> GAT  GAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00023      0.52      15      46 ..      12      42 ..       5      48 .. 0.85
   2 ?   -2.3   0.0       2.6   5.9e+03      38      42 ..      72      76 ..      56      90 .. 0.50
   3 ?    2.9   0.3     0.062   1.4e+02      31      60 ..     130     160 ..     122     163 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00023
         GAT 15 epdeellenellkeLyetckamqpriqkliee 46
                ++ ++ ++ne+l++L+e++ + ++++  +ie+
  CCD24331.1 12 PN-DQSSNNETLEKLHEELATTEQQVGSIIES 42
                33.4889*******************999986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.6
         GAT 38 priqk 42
                 r+ k
  CCD24331.1 72 DRLAK 76
                22222 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.062
         GAT  31 etckamqpriqklieet.adeedllaelLql 60 
                 +++k+++ ++ + i+e  +d e+ ++++Lq 
  CCD24331.1 130 NSLKQLRDSLAEKITEEfPDMENNVKDILQR 160
                 7899999999999988778888899999985 PP

>> DUF2203  Uncharacterized conserved protein (DUF2203)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0035       7.9      39      79 ..      13      53 ..       3      64 .. 0.77
   2 ?    4.0   0.8     0.035        79      12      78 ..     115     156 ..      56     164 .. 0.51

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0035
     DUF2203 39 akaeaekseaaeleaeleeleaeieelveeieelGvevkdl 79
                + +++++++ ++l++el++ e+++ +++e + elGv + d+
  CCD24331.1 13 NDQSSNNETLEKLHEELATTEQQVGSIIESFIELGVSIYDF 53
                33333444489999999******************998776 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.035
     DUF2203  12 LpllkelleelralrkeleeleeeleeakaeaekseaaeleaeleeleaeieelveeieelGvevkd 78 
                 +  +++  +  ra+ + l++l+++l+e+                         ++ee+ ++  +vkd
  CCD24331.1 115 VEAIRRSNQYQRAKMNSLKQLRDSLAEK-------------------------ITEEFPDMENNVKD 156
                 2222222222223333333333333333.........................33344444444444 PP

>> DUF4404  Domain of unknown function (DUF4404)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.6     0.018        41       3      16 ..      20      33 ..      19      39 .. 0.86
   2 ?    1.9   0.0      0.16   3.5e+02      15      60 ..      53      95 ..      39      98 .. 0.70
   3 ?    4.5   0.2     0.024        54      13      47 ..     119     153 ..     112     163 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.018
     DUF4404  3 elLekLheeLeqne 16
                e+LekLheeL+ +e
  CCD24331.1 20 ETLEKLHEELATTE 33
                89********9765 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.16
     DUF4404 15 nesldeetralLeslaedieellaeedaaaeeeelaerlneaverF 60
                 + +de t++ +++l++++ +l + ++  ++    + +ln++   F
  CCD24331.1 53 FPGTDEGTQGMITNLKRNVDRLAKLNQRSNDP---TSQLNNISIPF 95
                56789999999999999999877766655554...45555555555 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.024
     DUF4404  13 eqnesldeetralLeslaedieellaeedaaaeee 47 
                 +++++ + ++ ++L++l++ + e + ee +  e++
  CCD24331.1 119 RRSNQYQRAKMNSLKQLRDSLAEKITEEFPDMENN 153
                 55666677777788888888888887777666664 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.4     0.038        85      33      61 ..      11      39 ..       5      46 .. 0.76
   2 ?    5.2   1.5     0.013        29      24      56 ..      61      93 ..      58     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.038
     NPV_P10 33 nlpdvtelnekLdaqsaqLaeletkvenI 61
                + +d +  ne L+++ ++La+ e++v +I
  CCD24331.1 11 QPNDQSSNNETLEKLHEELATTEQQVGSI 39
                55555666889999999999999999877 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.013
     NPV_P10 24 qqqvddvqenlpdvtelnekLdaqsaqLaelet 56
                q  +++++ n+  + +ln++ ++ + qL++++ 
  CCD24331.1 61 QGMITNLKRNVDRLAKLNQRSNDPTSQLNNISI 93
                677889999999999999999999999988865 PP

>> RIC3  Resistance to inhibitors of cholinesterase homologue 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00022      0.49     109     144 ..       6      40 ..       2      41 .. 0.81
   2 ?    0.2   0.6      0.39   8.8e+02     113     135 ..     121     141 ..      65     152 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00022
        RIC3 109 kkkakenakkkteteeeLeeLqerLaeTEramekil 144
                 +++++++++++ + +e Le+L+e La TE+   +i+
  CCD24331.1   6 TDATSQPNDQSSN-NETLEKLHEELATTEQQVGSII 40 
                 5666677777766.999*************999887 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.39
        RIC3 113 kenakkkteteeeLeeLqerLae 135
                 +++ +++  + + L++L++ Lae
  CCD24331.1 121 SNQYQRA--KMNSLKQLRDSLAE 141
                 2233333..45788888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1718  (0.0958224); expected 358.6 (0.02)
Passed bias filter:                      909  (0.0507); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.45
# Mc/sec: 1103.69
//
Query:       CCD24332.1  [L=213]
Description: hypothetical protein NDAI_0D00180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-53  180.6   0.0      2e-53  180.3   0.0    1.1  1  Ras       Ras family
    5.6e-20   71.7   0.0    1.2e-19   70.6   0.0    1.5  2  Roc       Ras of Complex, Roc, domain of DAPkinase
      4e-05   23.1   0.0    5.2e-05   22.8   0.0    1.2  1  Arf       ADP-ribosylation factor family


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.3   0.0   3.3e-57     2e-53       1     160 [.      12     183 ..      12     185 .. 0.98

  Alignments for each domain:
  == domain 1  score: 180.3 bits;  conditional E-value: 3.3e-57
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeik 98 
                 Kl +vGd+++GKt+ll+ f k++F+e y +T+ +++y++++++dg++v+l +wDTAGqe++++lr+l+y d+++il++++++  +s+env+ kw+ e+ 
  CCD24332.1  12 KLTVVGDGSCGKTCLLIVFSKGQFPEVYVPTV-FENYVADVDIDGRHVELALWDTAGQEDYDRLRPLSYPDSNVILICFSVDIPDSLENVQeKWIAEVL 109
                 899*****************************.**********************************************************9******* PP

                 HHSTTTSEEEEEEETTTGGG............G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  99 rvaeenvpivLvGnKvDlee............kravsteegeelakelg.lkfletSAktnenveeafeellrei 160
                 + ++  vpi+L G KvDl++            ++ v+t+eg+e+a+++g + ++e+SAkt  +v+e+fe++++++
  CCD24332.1 110 HFCQ-GVPIILAGCKVDLRNdpqviealraegQQPVTTAEGQEVAEQIGaAGYYECSAKTGFGVREVFEAATKAA 183
                 ****.7*******************************************999*****************999876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0   2.1e-23   1.2e-19       1     120 []      12     126 ..      12     126 .. 0.88
   2 ?   -2.8   0.2       1.1   6.8e+03      35      35 ..     194     194 ..     175     211 .. 0.47

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 2.1e-23
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCH. CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenl. 95 
                 K+ +vGd++ GKt+ll  f +++f e + +t+  +++   v +i+g       ++v+l++WDtaGqe+++ l+pl + +++++++++     +s en+ 
  CCD24332.1  12 KLTVVGDGSCGKTCLLIVFSKGQFPEVYVPTVFENYVAD-V-DIDG-------RHVELALWDTAGQEDYDRLRPLSYPDSNVILICFSvdiPDSLENVq 101
                 899****************************99888754.4.4444.......689*****************************99754544557763 PP

                 HHHHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  96 keWlkelkkvagkspvilvgnkiDl 120
                 ++W+ e+ + ++  p+il g k+Dl
  CCD24332.1 102 EKWIAEVLHFCQGVPIILAGCKVDL 126
                 68*********************95 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.1
                 E CS
         Roc  35 d 35 
                 +
  CCD24332.1 194 S 194
                 1 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   8.7e-09   5.2e-05      14     146 ..      10     145 ..       1     182 [. 0.72

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 8.7e-09
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEE.EEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHH.HHHH CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTigfn.veelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakee.Lkal 107
                   ++ ++G  + GKt +l  ++++++ +  vPT+  n v ++ i  +++++ +wD  Gqe   +l    +++ ++++ +  +   + le+ +e+ ++++
  CCD24332.1  10 RRKLTVVGDGSCGKTCLLIVFSKGQFPEvYVPTVFENyVADVDIdgRHVELALWDTAGQEDYDRLRPLSYPDSNVILICFSVDIPDSLENVQEKwIAEV 108
                 56788999999**************988589**987746778776689************998888888888888776655555666777766525666 PP

                 CTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS CS
         Arf 108 leeeelkevallvlaNKqDlpealseeelrellgleelk 146
                 l+    + v++++ + K Dl+++ +  e  ++ g + ++
  CCD24332.1 109 LH--FCQGVPIILAGCKVDLRNDPQVIEALRAEGQQPVT 145
                 64..47899999999999999988777766666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1576.54
//
Query:       CCD24333.1  [L=2632]
Description: hypothetical protein NDAI_0D00190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.1e-115  386.8  61.2   2.1e-115  386.8  61.2    1.7  2  Fmp27        Mitochondrial protein from FMP27
   3.2e-113  379.1   7.0   3.2e-113  379.1   7.0    2.0  2  Fmp27_WPPW   RNA pol II promoter Fmp27 protein domain
    1.2e-77  261.8  13.5    2.1e-54  185.2   9.1    2.6  2  Apt1         Golgi-body localisation protein domain
    7.2e-56  188.6   0.1    1.9e-55  187.3   0.1    1.8  1  Fmp27_GFWDK  RNA pol II promoter Fmp27 protein domain
    9.7e-51  171.7   0.6    8.7e-50  168.6   0.5    2.8  2  DUF2405      Domain of unknown function (DUF2405)
    8.6e-32  109.9   0.0    5.1e-31  107.4   0.0    2.5  1  Fmp27_SW     RNA pol II promoter Fmp27 protein domain
  ------ inclusion threshold ------
       0.13   12.6   0.0       0.55   10.6   0.0    2.2  1  B5           tRNA synthetase B5 domain


Domain annotation for each model (and alignments):
>> Fmp27  Mitochondrial protein from FMP27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.8  61.2  8.1e-119  2.1e-115       2     875 ..      18     930 ..      17     932 .. 0.90
   2 ?   -2.8   0.3      0.47   1.2e+03     675     775 ..    2238    2348 ..    2235    2363 .. 0.70

  Alignments for each domain:
  == domain 1  score: 386.8 bits;  conditional E-value: 8.1e-119
       Fmp27   2 lasivllllirlitgisikrigylslrritittkdvkIeIrslrlrlfanptwlridnlelldvrvskkkdrekkseeskseepedksksnsnlkekls 100
                 ++s ++ ++ir+ tgi i+ ++++s + i++++k  k +I s++l l   ++ ++i +l+ +  ++  +     ++  +k+  + +++  +s++  +  
  CCD24333.1  18 AVSTIIRFIIRYMTGIDIQLVNPFSCKFINVSYKG-KFSINSIQLLL--LKREIIIEGLT-INKEI--SNSAVDEGILEKTAIKLKENHNKSKHEVYTP 110
                 6788999****************************.***********..***********.99999..3333333333333333332233345555555 PP

       Fmp27 101 ltppkellkrlvrtllriinavdihirntsisdedvhetiigslsltvderkkkvdreeekaefeilvrnveftvdg..keaeildectlslkgk.lsi 196
                 +t+p   lk++  ++++ ++++++ ++n++i+ + ++++  g++ +++    ++v+     ++f+++ rn+++  +   ++  i+  +tl + +  + +
  CCD24333.1 111 ITLP-TWLKKYYVMISNSLDKFHVNLENCEIKGSAIKIERFGFIIAAD----SQVNG----ISFDFYARNIYWLDKVlcNDGFITLKTTLQFENEmINL 200
                 5555.55556666669********************************....55555....99**********77777666655555666665531334 PP

       Fmp27 197 dlsggLrdlevslklgrlniplddlenlvkqlkkskeekdeesvkaeerdeksledqseeleepg........skdekkvekvaksl.elvssllrlis 286
                 ++    + +e+ ++   l i l ++  +++ +kk+k+  +++s  ++++++ks  +++e l+e+           +ek+v k++ ++ + ++ ++   +
  CCD24333.1 201 KK----DHIELPFSNSVLDIKLGNISLSMSAIKKFKNITVSKSKLNTDSSNKSNNNNIEGLKEQTkkesplteLEIEKAVSKLQYIVqNQIRTYIAPCT 295
                 44....566666666666666666666666777777777777777777777777777777777666777777778888888888776256999999*** PP

       Fmp27 287 eiqikvenlglsdipfsslddlssvsdy....vsakevslnlsrldkksPgfkmlfkpddipvqlllaltslkvsldkn.....shkedeileIPsatl 376
                 e++i ++++++ d+p +s ++ls+++ +    ++a+++++n+sr+++++Pgfk+ f++ddip +++la+++l++ l+k+     +++  +i+e+P++++
  CCD24333.1 296 ELNISIDKISFADFPITSQPKLSKINQFlsyhICASNFTFNVSRFRNEMPGFKLIFQEDDIPYKISLAFSRLNLCLNKSdkenkTRELLKIAEVPNISI 394
                 **************************************************************************88888*999999999********** PP

       Fmp27 377 tgktnllsktvs.sdtvtakefqnlilelnltlssPtiDldheqlslllsllknikllkkskslkkkkks...........rrllsllsellpkvnlKf 463
                 +g++nlls++++ + tv++   + +i ++++ + sPtiD+d++ ls+l+s+l nik++++++++ +k  +           ++l+  ++ +lp +n++ 
  CCD24333.1 395 FGESNLLSQKFEiFKTVDGLPINRPICNIKANIASPTIDVDIKSLSFLKSFLDNIKVFEQTFTDPMKVTNrtenciikrrkQILQAVFKKFLPIFNTRC 493
                 *******************************************************************9999*********999**************** PP

       Fmp27 464 sieepvlrihlpekgkskfnllissisvlsfdlessht...dyasesellyklitrlelsssqlyysn.nkgvkheilkldslelkvqlnllpnlkvka 558
                 ++e+p++ i++    ++  nl+i+++s l f+++ +       ++++++ y++ ++lel +++l++    +++k +ilk++s+ +k+q ++lp++ +++
  CCD24333.1 494 ILEDPKIAINDG---EN-LNLFIFKFSALIFHTRQRNIllkITRKKKHISYESKSSLELLDMKLQHLIkDSTYKITILKIESISFKNQFKMLPESIFTL 588
                 ***********8...35.****************666699999***********************988****************************** PP

       Fmp27 559 sgslntlsldlseleilkgindvvrqlrrqvrnrlnlsveqkyfndeikekredltnseekesen.........stlkeklfrrlPswlsslkfelssl 648
                  g+++ + +dlsel +++++n++vr+l++q+     l+ve+ yf+  +  ++++++ se+++s +         +  +e lf  lP  ++++k++++++
  CCD24333.1 589 NGDIDSIEVDLSELPTMVTLNKIVRRLDCQM-----LNVEENYFKELYMSFASNIETSENQCSLIakenigekkLLPSEFLFTSLPANFDYFKVNIRNI 682
                 *******************************.....**************************99999****99988899******************** PP

       Fmp27 649 sldlgcrsvlipkiiydstldeevsdfsrgvslklrklsveykklklslgnsvkqireftrsssssesdsd..dkspresdselsDlssldstas.... 741
                 ++ lg+rsv++p+  ++s+++++ +d  +g   klrk+++++++ ++sl++ ++q++ ++ ss++ +++s   d  ++   ++l+D+s+ d t++    
  CCD24333.1 683 KIMLGSRSVFMPPEVFSSMESQSSHDLVDG---KLRKFCFTIDRIQISLFGDKTQWHNKITSSNADMVRSGstDGFKKFAEEGLDDISTSDATEVehlw 778
                 ******************************...*************************************9656556********************** PP

       Fmp27 742 ..........isledevdesddklesrpflsLpsfdikvstlsdks....gpklrlnleikeidgryslfklfciiyalsllksffpkpiktvkrkssk 826
                           +s+ +e+ e  d+l+ r+++++ +f++k+++ ++       +k+ +++e ++ ++ +sl+++f +++ +++l+++f+++i+t +r+s +
  CCD24333.1 779 ninvlintmsSSIIAETAEVTDELTHRVVNKVSVFSLKIFPETEFFspdePKKIAVQIENQKLKSVVSLMNIFLMVSGVHTLHQIFGQEITTRRRSSWA 877
                 ********************************************889998899*********************************************9 PP

       Fmp27 827 devqelskpstk....vkkdkkslkellkldvklksiavivrLpndvplllei 875
                 ++++ + + s+k    +  d+  lk l+++++++  i  i+ Lpn+++++le+
  CCD24333.1 878 KKYLIAIGNSKKkscfRNIDWSELKTLVEMTLSSNFITEIIILPNGLKTKLEV 930
                 9999888888888**************************************97 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.47
       Fmp27  675 fsrgvslklrklsveykklklslgnsvkqireftrsssssesdsddksp.resdselsDlssldstas..............isledevdesddkle 756 
                  ++  ++ +++kl + y+  ++   +++  i+ f++  ++ e+ +   +    ++  l+D+s++d+++               +++ +  ++ +d  e
  CCD24333.1 2238 DKEELQKQINKLIIGYDTENIV-KTKNLVISLFYNYKKL-ELLE---NElLFKRALLDDVSRIDLSNIhnekqshllslyylMNILNVSSKWKDTSE 2329
                  6677788888888888888888.8888889999999984.4555...25699999999999999988856666666666666666666666666666 PP

       Fmp27  757 srpflsLpsfdikvstlsd 775 
                  + ++++ ++ ++ ++ l+d
  CCD24333.1 2330 KTLIFDFNIKEVLIHMLHD 2348
                  6666666666666666665 PP

>> Fmp27_WPPW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.6      0.72   1.9e+03     316     359 ..     223     266 ..     197     294 .. 0.54
   2 !  379.1   7.0  1.3e-116  3.2e-113       1     482 [.    1705    2162 ..    1705    2162 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.72
  Fmp27_WPPW 316 msrkavkfiedlveeqekskkkkskekeesseksssedeesnee 359
                 +s  a+k ++++  +++k ++++s+++++++ +  +e+ ++++ 
  CCD24333.1 223 LSMSAIKKFKNITVSKSKLNTDSSNKSNNNNIEGLKEQTKKESP 266
                 55666666666666666655554444333333333333222222 PP

  == domain 2  score: 379.1 bits;  conditional E-value: 1.3e-116
  Fmp27_WPPW    1 GlKakvdsfklDLHQRreelttvnkklnkqkkvsklkinegeidlksaDiRavsasfketsveeikesslsslsseqssessesdlsrfeipdnDls 97  
                  GlKak+++fk+DLHQR+e +t++++ l+ +k+v+klk+ e++i ++++D+R+++++f++ ++ e+ke+++                  ++i+dnD+ 
  CCD24333.1 1705 GLKAKASHFKMDLHQRKELVTEYQEMLDVTKRVKKLKFLEADIIVNNIDVRTLHGMFRKLNYIEEKEDAE------------------YHIFDNDMR 1783
                  9**************************************************************9999987..................89******* PP

  Fmp27_WPPW   98 WiDmdDFveldwiepeesnpkikilPLaysPrftYfRqtdegdkiqvdek...rispFgnektHdCilgkendpervqkelleeRleeleeqiekle 191 
                  W+D+ DF+e+++++++++ p i+i P++y+P f+Y +++++gdk+qvd k   +i+pF+n+ +H+Cilg+   p ++  e++++Rl+ l++   k++
  CCD24333.1 1784 WLDIMDFQEAFFVDVNNYFPVIEINPMLYAPGFMYKKRASYGDKYQVDAKdykPIKPFENKVSHNCILGS---PVEIHPEVFQKRLDVLKAFEMKTT 1877
                  **************************************************555555**************...77********************** PP

  Fmp27_WPPW  192 ekleelelksekedeelkeeieelekeikelkeklefletlledlkeseesseeeeskskelsaastsesfseldelasseesaseFknRFiihniq 288 
                  ++l+ +e+ ++k         ++lek ++++++ ++ ++tll d+++ +        k+ +  ++s + ++s l+ l+ s++ ++ F+nR++i+ ++
  CCD24333.1 1878 QELNVVEDPEKK---------KKLEKLVRDTRSTIKDVQTLLVDFNSVCP-------KTGRVLTSSGKLKYSALQLLHDSKMCNEAFENRYFIFGML 1958
                  ************.........8999************************8.......6788999********************************* PP

  Fmp27_WPPW  289 lkwnnslRnillrylhqvsqrrgfvyymsrkavkfiedlveeqekskkkkske..........keesseksssedeesneeleerieelledvkkae 375 
                  l+wn+s+R++++++ +++s +++f+ +  +++++++e++++e+ +s+ k ++           k++ + +++++++  ++el e++e+ l++ + + 
  CCD24333.1 1959 LQWNESVRDVVFKFWYYFSLSKDFNILSAQHSLEIFENIIKERISSEGKPNSPlddntsasriKSHFQFEDTNDQSVLTAELLEMFERGLSELSCSF 2055
                  *********************************************9987666588777666554444445555555778999******999999999 PP

  Fmp27_WPPW  376 efeaqnsylvrLIaPQiqlqSeknpksvvlvtakdielkivsiedkervsddvsglverRfgvllddaqfFvlkkkdfskksesllsgnkyGaekgs 472 
                  +f+ +++++v++I+PQ+ql ++++p+s+++v++++i lk+  +e+  +++ ++++ + +R+gv +++a++F+++k+ f++++++++++n+yG++kgs
  CCD24333.1 2056 DFNKKENHYVQFITPQVQLLTKEEPDSCIIVSTPNILLKVHAFEEAGHEAINMNNSFLKRTGVFFTNANAFLFHKDVFKNRFALYFDTNSYGQKKGS 2152
                  ************************************************************************************************* PP

  Fmp27_WPPW  473 sWpPWvplEv 482 
                  +WpPW++lE+
  CCD24333.1 2153 DWPPWLGLEL 2162
                  ********96 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.2   9.1   8.1e-58   2.1e-54      37     306 ..    2202    2470 ..    2174    2495 .. 0.89
   2 !   79.6   0.2   8.8e-26   2.3e-22     397     478 .]    2488    2576 ..    2461    2576 .. 0.82

  Alignments for each domain:
  == domain 1  score: 185.2 bits;  conditional E-value: 8.1e-58
        Apt1   37 vdelsvefpklratanSsQYyalydivtdLLlysePlekerserlekimlasdfsdleglpemvkklqerirqleeikehfqieskyldkegwedrl 133 
                   d+++v++pk+++++nS++Y  +y i+t+LLly+eP ++e +++++k+++ +d +++ ++++ v++l  ++++le +++++ +++++ld+ ++ d+ 
  CCD24333.1 2202 DDKITVYVPKINISTNSKNYLFMYKIITNLLLYVEPDKEELQKQINKLIIGYDTENIVKTKNLVISLFYNYKKLELLENELLFKRALLDDVSRIDLS 2298
                  699********************************************************************************************** PP

        Apt1  134 klekelaeceeeLfllmkaittsqlrkkekskskslsaalrwsisadeivWhlldddgeplaelqLknaeydrtdnsdgsnsnrleigslqglNllp 230 
                  ++ +e ++   +L++lm+ ++ s + k   + s+   + l ++++++e+  h+l d+g+p++++++++ + +r ++s g n n+l+++++q++Nl+ 
  CCD24333.1 2299 NIHNEKQSHLLSLYYLMNILNVSSKWK---DTSE---KTLIFDFNIKEVLIHMLHDSGKPFLDVAIAKLHLERRQSSYGFNRNQLTVKMMQIFNLER 2389
                  ********************9998433...3333...4599******************************************************** PP

        Apt1  231 naiypellspy.....edepedkkkpmlrvywkmlepvgGipvlehfevnlfPlkiqLeeevgkklfeYiFPkrdsdaqea 306 
                  + iy++ll py     ++ p ++ kp++ ++w+m +p+gGi+v+ ++e +l  lki++ee++ k++++++  k++  ++ +
  CCD24333.1 2390 DVIYHDLLGPYfakhkRNIPAADLKPLIFIKWEMDQPIGGIKVVHNVETELEGLKINIEEHTIKRIIDWLLLKESFLSSTD 2470
                  ***************988999************************************************987766444444 PP

  == domain 2  score: 79.6 bits;  conditional E-value: 8.8e-26
        Apt1  397 r.......asddleemksRaskymtfayikipsvvlclSYkgkkeknledvhdlvfrlPtleyrnktwsnldLalalKkdvikallsht 478 
                           ++dl+em++R+s y+ ++ +++++++lc+SYkgk+ +++ +v+d+ f++Ptl + n+t    d+++alK+  +++ l ht
  CCD24333.1 2488 PeseisdgLNEDLNEMIKRSSDYIIIHALQLNQFKLCISYKGKGTRRIANVSDFLFTFPTLSFANQTLRTIDILNALKRVLVRVFLRHT 2576
                  12233445899*****************************************************************************7 PP

>> Fmp27_GFWDK  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.3   0.1   7.3e-59   1.9e-55       1     156 []    1285    1443 ..    1285    1443 .. 0.99

  Alignments for each domain:
  == domain 1  score: 187.3 bits;  conditional E-value: 7.3e-59
  Fmp27_GFWDK    1 DYplplvhvp...seqskslkalklkgdlviaEelveseeslRkievplvpsaeaeeeesfysvtvertltsvKlysdlevdiesseptrltWGks 93  
                   DYplp+v +p   ++q k+++a++l+gd++++E+l +++++lR+++vplvps + e+++++ys++v+rt+ts+Kly+ l++di+s+++t++  G+s
   CCD24333.1 1285 DYPLPFVYIPpldASQTKEKSAIRLYGDFIVTEKLSHKDNALRTLFVPLVPSIALENTDTYYSLYVPRTVTSIKLYTSLKLDINSKDSTTVQIGNS 1380
                   9*********9999999******************************************************************************* PP

  Fmp27_GFWDK   94 yqpaiqqvmqaldkftkppvDpSpklgfWDKirllfhgkielkvkkdgelelalkgsrdPYki 156 
                   yqpaiqq+mq++d+f+kpp+DpSpk+g WDK+r++fh+++++++k++g++el +k+ r+PYk+
   CCD24333.1 1381 YQPAIQQAMQCFDNFSKPPLDPSPKMGLWDKLRYIFHASVTISWKNNGRFELGMKSDRSPYKL 1443
                   *************************************************************96 PP

>> DUF2405  Domain of unknown function (DUF2405)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.6   0.5   3.4e-53   8.7e-50       2     146 ..     948    1104 ..     947    1109 .. 0.98
   2 ?   -2.2   0.0       1.4   3.5e+03      24      57 ..    1456    1489 ..    1455    1490 .. 0.87

  Alignments for each domain:
  == domain 1  score: 168.6 bits;  conditional E-value: 3.4e-53
     DUF2405    2 klirlyvesptvkkvwarllsikdlrvdlre............kkseeeksidveteairlriPhkfvvykiidniittvKaikqlkhrfktsknee 86  
                  ++ir++ve p+ +++w+r++si+++++++++            + ++ e+++ +e+e+++++iPhkf++y++idni+t+vK++kql ++++tskn+ 
  CCD24333.1  948 EHIRMLVELPSAPNIWSRFVSISKYSISANIhqlleqvsadfdNFENLEPAVLLENESWHFSIPHKFAMYRLIDNITTVVKSLKQLLYSLRTSKNDL 1044
                  689********************************************************************************************** PP

     DUF2405   87 vlepkeekpkklPkiklkskrllfeleDDpFEaeLglIyriGlvEqkeRlakeeaFeekv 146 
                  +++pke+ + +lPki+lks+r++f++ DDp+Ea+L+++++iGl+Eq++Rl+k+e+F+++v
  CCD24333.1 1045 IIFPKEVPTPTLPKITLKSNRCVFSVADDPIEAKLNMVFQIGLQEQRARLTKLEEFNTSV 1104
                  *********************************************************987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
     DUF2405   24 kdlrvdlrekkseeeksidveteairlriPhkfv 57  
                  k+++++++e+ +  ++ ++ +++ + ++iP++f+
  CCD24333.1 1456 KNVKLTCNEDADPMKNFLSCSADELYFSIPNHFA 1489
                  5788888888888899999*************95 PP

>> Fmp27_SW  RNA pol II promoter Fmp27 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.0     2e-34   5.1e-31       1     103 []    1165    1267 ..    1165    1267 .. 0.99

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 2e-34
    Fmp27_SW    1 arerLqehnsksWirrikaakekqkeeikeirerlygkeelskedkdknekilplpkrppLlrltiedldleldkpsfpledlpdFlhdvGkGvPkd 97  
                  a+++Lqeh+s sWi+ri+++k+k++ee+++++++l+g+ ++sk + d n+k+++++++p L++l+i++++++l kps++ e + dF+h++G+GvPkd
  CCD24333.1 1165 AYRNLQEHISDSWIKRIQEYKRKEREEFRKNFQFLWGNIDYSKLPLDINRKVIAFTTNPFLMTLIIDQINIDLYKPSCGTEGVVDFIHNTGNGVPKD 1261
                  789********************************************************************************************** PP

    Fmp27_SW   98 teYslL 103 
                  teYs++
  CCD24333.1 1262 TEYSIM 1267
                  ****98 PP

>> B5  tRNA synthetase B5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00022      0.55       5      65 ..    1102    1166 ..    1099    1167 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00022
                  HHHHHHHHTS..---HHHHHHHHHHTT-E.EESSTTCEEEE..--TT-TT--SHHHHHHHHHHHH CS
                  xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
          B5    5 vekinkllGi..dlseeeiikiLkrlgceriekdkdlllVt..vPswRsDlereeDliEEvaRly 65  
                   + +nk++G   d+s +e+ kiL++ +c  ++ ++++       P     l++ee l E++ R+y
  CCD24333.1 1102 TSVLNKVIGRkpDVSIDEVYKILEKANCSSKSLNQNKSMMPtpFPINDKELTLEEMLTEDIHRAY 1166
                  66789****66699**************9665555544444114444469999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.33u 0.30s 00:00:01.63 Elapsed: 00:00:00.49
# Mc/sec: 16188.18
//
Query:       CCD24334.1  [L=490]
Description: hypothetical protein NDAI_0D00200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00038   20.2   0.0    0.00072   19.3   0.0    1.5  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
       0.71    9.6  11.2        1.3    8.8  11.2    1.4  1  Pox_Ag35  Pox virus Ag35 surface protein


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     8e-08   0.00072       3      69 ..     116     187 ..     114     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 8e-08
                 EESETTTSSHHHHHHHHH....TTSCEEEEEEEEE..TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   3 VgnLppdvteeeLkelFs....kfGpiksiklvrd..etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++n+p+d++ e +k++ +    k + +++i+l++      + kg af++ + + d  kAl  +ng+kl+ r++
  CCD24334.1 116 INNIPWDISPEGVKAWVEdglnKPEAVEEIDLPKSikDPTRLKGLAFITLKERNDLVKALT-FNGTKLNERTV 187
                 789999999988887765111156789*********99***********************.********997 PP

>> Pox_Ag35  Pox virus Ag35 surface protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  11.2   0.00014       1.3      56     127 ..     384     483 ..     370     490 .] 0.47

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00014
    Pox_Ag35  56 r..........attprkkpakkekkkkeeekeeaaeee................eledseedeenendedeseesvqaeee..ksnesteddadeldeS 126
                 +          a+  +k++++ +++k+++ k++ + ++                 ++d++ed+e+e++  e++ ++++e++  ++  +++ + +  d+ 
  CCD24334.1 384 EpelnwgdargANFGKKPTTTTTSTKEKASKSSIKANKpveepvkiqksafdvlRTDDDDEDDEEEEEAAENSTEPKVENKevDTLATETAKLAVDDDN 482
                 355555555553333343333333332222222222223444666667788888555555555555444444444444444004445555555555555 PP

    Pox_Ag35 127 d 127
                 +
  CCD24334.1 483 E 483
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       988  (0.0551063); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3439.84
//
Query:       CCD24335.1  [L=753]
Description: hypothetical protein NDAI_0D00210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-16   59.7   2.9    3.1e-11   43.6   0.4    2.6  2  RGS       Regulator of G protein signaling domain
    1.5e-12   47.4   0.0    1.6e-11   44.1   0.0    2.6  2  DEP       Domain found in Dishevelled, Egl-10, and Pleckstrin


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.4   3.4e-15   3.1e-11       2      82 ..     470     592 ..     469     613 .. 0.95
   2 !   15.8   0.1   1.4e-06     0.012      87     117 ..     711     741 ..     683     742 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 3.4e-15
                 HHHHHTSHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHTS..........................................SHHHHHHHHHHHHHHHHT CS
         RGS   2 leslledqpgrslFreFlesefseenlsFwlaveefkka..........................................keqeelkkkakeIyneyl 58 
                 l+++l d+  r lFr  le+e + enl+ ++++++f k+                                          k+ +e +++a+ I + y+
  CCD24335.1 470 LDDILRDPGMRYLFRRHLEKELCVENLDALIDIKKFSKKmtllkklldakhnkesnnknkskvksksfednilstidsalmKQANECLEMAYHISSSYI 568
                 89************************************************************************************************* PP

                 STTSTTSSTS-HHHHHHHHHHHCS CS
         RGS  59 apsspkelnidkklreelekrlek 82 
                 + +sp ++nid++lre+++k +  
  CCD24335.1 569 MVGSPYQVNIDHNLRESVTKIMLS 592
                 ******************999876 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 1.4e-06
                 TTTTHHHHHHHHHHHHHHHHHHHHTSHHHHH CS
         RGS  87 rklfeeaqeevfellekdsypkFlkselylr 117
                   lfe++ ++ + l++ ds +kF++s++y++
  CCD24335.1 711 YPLFEKVSRQMYHLMKIDSLQKFMNSDVYQE 741
                 569**************************97 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.13   1.2e+03      34      59 ..     100     125 ..      87     138 .. 0.78
   2 !   44.1   0.0   1.8e-15   1.6e-11      10      71 ..     321     390 ..     312     391 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.13
                 SSHHHHHHHHHHHHHCTSCECSSSSH CS
         DEP  34 edreeAvalgqlLldqgliehvedkh 59 
                 ++   A +l + +++ +l++   d+ 
  CCD24335.1 100 IKPTLAFHLLKVFMSANLLHTPADRT 125
                 667889************99766665 PP

  == domain 2  score: 44.1 bits;  conditional E-value: 1.8e-15
                 T...TEEESSE-HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTSCECS.....SSSHCC--SSSSS-EE CS
         DEP  10 h...lktypncftGseavdWLldnldiedreeAvalgqlLldqgliehv.....edkhqeFrdskqafYq 71 
                 +   ++++ +cft +++++WL+d+ di+  +eAv+++ l+l+ g+i+++     ++++++F  s ++fY 
  CCD24335.1 321 FgknKTIIDYCFTTKAIWQWLMDCTDIMYPKEAVSVAALFLKMGFIVPIllppsKNSKKKFHISRSSFYT 390
                 44448899*****************************************777653333339999999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       987  (0.0550505); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5278.90
//
Query:       CCD24336.1  [L=944]
Description: hypothetical protein NDAI_0D00220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.7e-08   33.8  10.4    5.4e-08   32.8  10.4    1.5  1  Zn_clus     Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.029   14.5   3.8      0.071   13.2   3.8    1.6  1  DUF2054     Uncharacterized conserved protein (DUF2054)
       0.28   12.0   5.1       0.98   10.2   5.1    1.9  1  zf-3CxxC_2  Zinc-binding domain
        1.6    9.1   6.4        5.2    7.5   6.4    1.8  1  PBP1_TM     Transmembrane domain of transglycosylase PBP1 at 
          5    6.7   8.6      0.054   13.1   0.5    1.8  2  DUF2968     Protein of unknown function (DUF2968)


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8  10.4   1.5e-11   5.4e-08       2      38 ..      47      86 ..      46      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.5e-11
                S-HHHHHCT---ST..SSSS.-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  2 aCdnCrkkKvKCda..kkPa.CsnCkklnleCtfysessk 38
                aC +Cr++K+KCda  k P  C++C+k++++C+ ++++++
  CCD24336.1 47 ACVECRQQKSKCDAydKAPDpCTKCQKKGVPCVLKKDFRR 86
                9**************977777************7777665 PP

>> DUF2054  Uncharacterized conserved protein (DUF2054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   3.8     2e-05     0.071      38     114 ..      34     112 ..       5     126 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
     DUF2054  38 ee.ekeeekskrfsCktCdkkseCCeeyeyCvsCClepdkkelleevlekaakkrkkvllasvedqf.elClakCRtss 114
                 ++ + +++k+++f+C +C+++++ C+ y+     C + +kk +   +++  +++ k++  +++e++f el ++    ss
  CCD24336.1  34 TSaSVSSTKKRKFACVECRQQKSKCDAYDKAPDPCTKCQKKGVPCVLKKDFRRTYKRARNEAIEKRFkELTQTLTNLSS 112
                 33246677889******************************99888888888888888888899998335555555555 PP

>> zf-3CxxC_2  Zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.1   0.00027      0.98       7      48 ..      45      87 ..      44     107 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00027
  zf-3CxxC_2  7 efkCekCgkeWsSanafaneaQeCkkCkekvepyklre..kdkk 48
                +f C +C+++ s   a+ +    C+kC++k +p  l++  + ++
  CCD24336.1 45 KFACVECRQQKSKCDAYDKAPDPCTKCQKKGVPCVLKKdfR-RT 87
                79**********************************99542.22 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.4    0.0014       5.2      18      70 ..     694     747 ..     688     754 .. 0.52

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0014
     PBP1_TM  18 akparkkasrrrrrdddydd.eydde.edDdddddeeeev.prkgkkkkpprkkrr 70 
                 ak +r++   +  +ddd dd e +   +dD +dd+ +e+  ++k ++++    k +
  CCD24336.1 694 AKLQRETNGTQEYKDDDDDDgEEEGVvNDDTHDDEKQEDGiSKK-RSSQ-DSIKLS 747
                 45567777776777777777644444155555555444432665.4443.333333 PP

>> DUF2968  Protein of unknown function (DUF2968)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.5   1.5e-05     0.054      97     176 ..      82     163 ..      78     166 .. 0.86
   2 ?   -4.4   2.3       3.6   1.3e+04     114     176 ..     426     486 ..     422     490 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
     DUF2968  97 veirrikleaqkaqlerqiaasearaerLqad..lavarqQeqavaerQkqarkeaaaLeaqreaaqaqlralqrqirqLqa 176
                 ++ rr+   a ++ +e+  ++  + +++L+++  l+  +q +q++ ++ + ++++ ++L++  ++  + l++   qi  L+ 
  CCD24336.1  82 KDFRRTYKRARNEAIEKRFKELTQTLTNLSSEeiLKKIEQEQQTLLDNRNFTKEKIKKLRESSSSSTTSLNSFTSQIPILND 163
                 689**************************99833333345556788899999*************************99985 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 3.6
     DUF2968 114 qiaasearaerLqadlavarqQeqavaerQkqarkeaaaLeaqreaaqaqlralqrqirqLqa 176
                  i++ ++  ++L++ +++a+  +q +++  ++  ++    ++q  + q  l+ l +q++qL+ 
  CCD24336.1 426 SINEVQNISKELKQMVQIAHFENQIINTMNSNPSNKLGMVSDQ--EKQPLLHVLSQQLSQLEI 486
                 5777777778888888888888888887777776666666655..345667777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (944 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1748  (0.0974957); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 6641.25
//
Query:       CCD24337.1  [L=445]
Description: hypothetical protein NDAI_0D00230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-22   78.1  21.0    1.9e-14   53.4  18.0    2.2  2  MFS_1       Major Facilitator Superfamily
     0.0023   16.3   2.5     0.0023   16.3   2.5    2.9  3  OATP        Organic Anion Transporter Polypeptide (OATP) fami
     0.0025   16.8  13.9     0.0025   16.8  13.9    2.5  3  Sugar_tr    Sugar (and other) transporter
     0.0081   15.1  19.4       0.01   14.7   4.4    2.7  3  MFS_1_like  MFS_1 like family
  ------ inclusion threshold ------
        1.1    7.7  36.6      0.025   13.1  13.3    3.6  3  MFS_2       MFS/sugar transport protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4  18.0   5.3e-18   1.9e-14       1     297 [.      17     343 ..      17     360 .. 0.81
   2 !   34.1  15.3   3.7e-12   1.3e-08      10     177 ..     267     437 ..     258     445 .] 0.79

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 5.3e-18
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslwlllvlrvlqGlg 98 
                 l+l++fl  la+++++ +l+ +  ++  ++++ ig+ ++l  +g ++ s++l + +d +Grr vl+ g +++ l++l++  f  ++++ll + ++  + 
  CCD24337.1  17 LWLSVFLRLLAYGLTNQVLT-LFLRAIDMTEDKIGIFMSLTLVGDVFCSYILTWYADSWGRRNVLIYGSIMMMLSGLVFNyF-ENFYILLTFAIFGVIS 113
                 699*****************.6669999***********************************************4444457.9988666666655555 PP

       MFS_1  99 .....agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...........Wravfyilaivsllafvlfllllpeepperkr 181
                       g + ++  ++ia+++p ++r+  +++ ++   +G++lg++  g+++++l            + +vf++ a+++   ++++lll   ++ + + 
  CCD24337.1 114 pssdeVGPFKSIEESMIAHLSPMNRRPEIYAMHALVGTMGSALGAISCGIFIDLLKkmtwatsdlqcYKLVFLLYALFASGKVIVMLLLSEKTELDGRF 212
                 333323567788889**************************************************************9999988666777777777777 PP

       MFS_1 182 kspkeee...kgtgpaplvpawkallkdpvl...w.....illialllfffgfsg.....lltllplylqevlglsglllaglllallalvgailalla 264
                   ++e+e   +  ++ ++vp++++l ++++    +     ++l+ ll++f++ s+     ++ ++  y + ++ +s ++ +g+++ ++++v+a + + +
  CCD24337.1 213 HDHIEDEhlaEAIVNDEMVPLIEQLSHPNQKsnkLsqetvSVLVKLLVIFMVDSLgsgfmTSGWMVYYYKNTFAMS-AVGLGMTFFVSQFVMASSTIPS 310
                 777777799977777777778888888885544424445567777777777777766666777888889*******.8999999*************** PP

       MFS_1 265 grlsdrlgrrrrlllallllllaalglallavt 297
                 + +++ +g+ r++ll  +   ++++++ ++  +
  CCD24337.1 311 SIIARMFGPVRATLLVQIPSGIFSILIPFAESY 343
                 ********9777777777777777776666655 PP

  == domain 2  score: 34.1 bits;  conditional E-value: 3.7e-12
       MFS_1  10 larsi.lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fasslw.lllvlrvlqGlgagalfpa 105
                 l++++ ++ ++  ++++++ +s+  +g+ + +  +++a +++p + ++  fG+ r  ll  + ++++  +l+ fa s+  + ++l     l++++ ++ 
  CCD24337.1 267 LGSGFmTSGWMVYYYKNTFAMSAVGLGMTFFVSQFVMASSTIPSSIIARMFGPVRATLLVQIPSGIF-SILIpFAESYLpISILLLNCHFLTTAMDVTP 364
                 444432566666699999*************************************888888888888.3333377666646666666666666****** PP

       MFS_1 106 gaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivslla.fvlfllllpeepp 177
                  ++l++ + ++++ ++++g++++g  ++  +gp++ g+la  ++ W ++++i + + + a f+l+ ++lp ++ 
  CCD24337.1 365 RQILLTNIIKPKDLTKVMGIVNIGKTFSRCIGPIFTGILAkMNYLW-LCYIISGSLVITAdFILACWFLPIDAQ 437
                 ****************************************444445.5577777777777999999**998876 PP

>> OATP  Organic Anion Transporter Polypeptide (OATP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   2.5   6.5e-07    0.0023       6      84 ..      17      95 ..      14     106 .. 0.93
   2 ?    1.6   2.7     0.019        67     174     334 ..     143     315 ..     140     338 .. 0.47
   3 ?   -1.2   0.2      0.13   4.5e+02     464     520 ..     348     403 ..     339     416 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.5e-07
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP  6 lsllglvqamvsgyfkstittiEkrFklpsstsgliassneignillilfvsYfggrghrPrwigigallmalgsllla 84
                l l +++ ++++g+++ ++t + +  +++  ++g+ +s+  +g ++++ ++++++++  r  ++ +g+++m l+ l++ 
  CCD24337.1 17 LWLSVFLRLLAYGLTNQVLTLFLRAIDMTEDKIGIFMSLTLVGDVFCSYILTWYADSWGRRNVLIYGSIMMMLSGLVFN 95
                45667888*******************************************************************9985 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.019
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxx...x......... RF
        OATP 174 yalrilGpalGfllGslllklyvdidseisltpkdprWvgaWWlgflilgvllllaaiplffFPke..lpkkkeerakkkseeesa...e......... 258
                 ya+ +l   +G +lG++   +++d+ ++++  ++d +    + l fl+ ++++   +i+++++ ++  l ++ +++ ++++ +e     e         
  CCD24337.1 143 YAMHALVGTMGSALGAISCGIFIDLLKKMTWATSDLQ---CYKLVFLLYALFASGKVIVMLLLSEKteLDGRFHDHIEDEHLAEAIvndEmvplieqls 238
                 6777777788999999999999999888887777755...44455555555555555555555555345555555555555544434431333332211 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 259 kkeekkkkeksksseeeelkslkdfpkalkrllknpifllvilssvfeillv.aGfitFlpkylEtqFslsaseAnl 334
                 + ++k++k ++++ +   +  +  ++ +l + +     +++  +++f +++v  G+  F+++++     + +s  + 
  CCD24337.1 239 HPNQKSNKLSQETVSVLVKLLVIFMVDSLGSGFMTSGWMVYYYKNTFAMSAVgLGMTFFVSQFVMASSTIPSSIIAR 315
                 11111111111111101111111112222333333333333333333333331455555555554444444444444 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.13
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        OATP 464 lillflvsflgalgrvpallvilRcVkkedksfalGlqlllirllgliPgPiifGai 520
                 ++ll +  +++a+  +p  +++  ++k++d +  +G+  +  ++++   gPi+ G +
  CCD24337.1 348 ILLLNCHFLTTAMDVTPRQILLTNIIKPKDLTKVMGIVNI-GKTFSRCIGPIFTGIL 403
                 4455555667899999999999999999999999999765.4577888888887765 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  13.9   6.9e-07    0.0025      47     299 ..      48     305 ..      28     318 .. 0.73
   2 ?    2.8   2.8     0.012        42      23     124 ..     231     338 ..     223     343 .. 0.61
   3 ?   -0.4   0.4      0.11   3.9e+02      51      95 ..     381     429 ..     352     433 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.9e-07
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHH.....HHHHHHHHHHHHHTTS-SCCHHHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGig.....vGlasvlvPmyisEiApkklRgalv 140
                  +g+++s++lvG ++ s+++ + +d +GR+++l+ ++++++ ++++    +   ++++l++  ++  i+     vG +  +    i+ ++p + R  + 
  CCD24337.1  48 KIGIFMSLTLVGDVFCSYILTWYADSWGRRNVLIYGSIMMMLSGLVFNYFE---NFYILLTFAIFGVISpssdeVGPFKSIEESMIAHLSPMNRRPEIY 143
                 689***************************************999998888...899999987666664555669*9********************** PP

                 HHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.. CS
    Sugar_tr 141 slyqlaitfGilvaaifglgl.nktsnadgwrillglqlvpallllilllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee 238
                  ++ l  t+G  ++ai+  ++ +  ++  +w     lq+   ++ll++l+        l+  +k+e + ++   +++e +a+  +++e+  l ++ +  
  CCD24337.1 144 AMHALVGTMGSALGAISCGIFiDLLKK-MTWAT-SDLQCYKLVFLLYALFASGKVIVMLLLSEKTELDGRFHDHIEDEHLAEAIVNDEMVPLIEQLSHP 240
                 **************9988888355555.55543.34555555566666666666666677778889889999999999666666666665555554443 PP

                 ...HTTHHHHSH........HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHH CS
    Sugar_tr 239 kaswkellsskt.....vrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvv 299
                 +++ ++l ++ t      +  ++++  l ++   +G+++ +y  +  ++ +gl  ++ v+  v++ 
  CCD24337.1 241 NQKSNKLSQE-TvsvlvKLLVIFMVDSLGSGFMTSGWMVYYYKNTFAMSAVGLGMTFFVSQFVMAS 305
                 3333333333.2231113445555555666677889888888788889999999996666555554 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.012
                 HHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHH.HHHHHHTTHHHHHHH..HHHHHHHHHHHHH-TTTTSS-TGGGGG....HHHHHH CS
    Sugar_tr  23 ltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfa.gllgdrfGRkkslli..aavlfvigavlqaaakgknsvevlivg....RvlvGi 114
                 + l++++++ +++++k s+e+ svl+ l+v if+v ++ +++++ g+++ ++ +  ++ +   ++ f+++++++a ++  +s+ + ++g     +lv i
  CCD24337.1 231 VPLIEQLSHPNQKSNKLSQETVSVLVKLLV-IFMVDSLGSGFMTsGWMVYYYKNTFAMSAvgLGMTFFVSQFVMASSTIPSSIIARMFGpvraTLLVQI 328
                 667777777777888877777555555554.45555554444441444444444444443223456888899988888666666666666655567777 PP

                 HHHHHHHHHH CS
    Sugar_tr 115 gvGlasvlvP 124
                 + G++s+l+P
  CCD24337.1 329 PSGIFSILIP 338
                 7777777776 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.11
                 HHHTHHHH....HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH- CS
    Sugar_tr  51 ivsiflvG....aiiGslfagllgdrfGRkkslliaavlfvigavlqaa 95 
                 +++i+++G    + iG +f+g+l+++     +++i++ l++ + ++ a+
  CCD24337.1 381 VMGIVNIGktfsRCIGPIFTGILAKMNYLWLCYIISGSLVITADFILAC 429
                 4445555511114567788888888887788888888888888777765 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   4.4   2.8e-06      0.01     229     321 ..      16     108 ..       3     115 .. 0.87
   2 !    9.8   2.5   8.8e-05      0.32     141     269 ..     137     299 ..     122     345 .. 0.70
   3 ?   -2.2   0.2       0.4   1.4e+03      38     375 ..     384     405 ..     369     442 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.8e-06
  MFS_1_like 229 ifllvalilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpiev 321
                 ++ l +++   ++g+ ++ l+l+L   + ++  +G+++ l+ v+ +   ++  +  +  G +++li + ++++l  l+ +++en+ ++l + +
  CCD24337.1  16 LLWLSVFLRLLAYGLTNQVLTLFLRAIDMTEDKIGIFMSLTLVGDVFCSYILTWYADSWGRRNVLIYGSIMMMLSGLVFNYFENFYILLTFAI 108
                 4556777778899999**********************************************************9999999999999888765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 8.8e-05
  MFS_1_like 141 gedrkdyGrqrlfGsvGyaifafitGilidhysvnllp......ysallyvlaallvisllvvlilnetekesklkvtksl.................. 215
                 + + + y+   l G+ G a+ a+  Gi+id ++  +        y+ +++++a++    ++v+l l e++  +     +++                  
  CCD24337.1 137 NRRPEIYAMHALVGTMGSALGAISCGIFIDLLKKMTWAtsdlqcYKLVFLLYALFASGKVIVMLLLSEKTELDGRFHDHIEdehlaeaivndemvplie 235
                 55666799999********************9986666799**99999999999998888887777766665544444444788999999999999999 PP

  MFS_1_like 216 .....qvllnilknpeviifl..lvalil.gmswgiien.FlflYL.kelgasntllGslvalg 269
                      ++  n l++  v +++  lv++++    +g++ + ++  Y+ +    s   lG++ ++ 
  CCD24337.1 236 qlshpNQKSNKLSQETVSVLVklLVIFMVdSLGSGFMTSgWMVYYYkNTFAMSAVGLGMTFFVS 299
                 9999944555555555554431133333312344555441355555223344555555555554 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.4
  MFS_1_like  38 iitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsvaqdvdaektfwilfllvvlasfflaailvlldaat 136
                 i+     + + ++p ++g la                                                                              
  CCD24337.1 384 IVNIGKTFSRCIGPIFTGILA------------------------------------------------------------------------------ 404
                 333333444444444444433.............................................................................. PP

  MFS_1_like 137 lkelgedrkdyGrqrlfGsvGyaifafitGilidhysvnllpysallyvlaallvisllvvlilnetekesklkvtkslqvllnilknpeviifllval 235
                                                                                                                    
  CCD24337.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

  MFS_1_like 236 ilgmswgiienFlflYLkelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpievLhgisfgllwaaa 334
                                                                                                                    
  CCD24337.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

  MFS_1_like 335 veyvskiapksleatgqgllsglyfglGralGsliGGllwd 375
                                                         +
  CCD24337.1 405 ----------------------------------------K 405
                 ........................................3 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  13.3   7.1e-06     0.025     228     384 ..      16     168 ..       2     209 .. 0.73
   2 ?    1.6   9.8     0.022        80     226     331 ..     255     360 ..     240     374 .. 0.73
   3 ?    0.6   1.5     0.045   1.6e+02     107     193 ..     353     432 ..     343     443 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.1e-06
       MFS_2 228 illllfllaalalgvlnglllYyltyvlgngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllviagf 326
                 +l l+++l++la+g++n  l ++l+ +  +++++ +f+ ++ ++ +  + +  + a  +g++n+ + g++++++ ++++  +  +n +++l++++ + +
  CCD24337.1  16 LLWLSVFLRLLAYGLTNQVLTLFLRAIDMTEDKIGIFMSLTLVGDVFCSYILTWYADSWGRRNVLIYGSIMMMLSGLVFNYF--ENFYILLTFAIFGVI 112
                 45568899******************999*******************************************9999999999..555555555444444 PP

       MFS_2 327 g.....vgvaallpwsmladvvDygelktGkrregvffavlsfisklatgiglgvsgllLsaf 384
                 +     vg + ++ +sm+a         ++ +r+ +++a+ +++  +++++g++  g+ +++ 
  CCD24337.1 113 SpssdeVGPFKSIEESMIAH-------LSPMNRRPEIYAMHALVGTMGSALGAISCGIFIDLL 168
                 41122234455555555544.......457778888899999999999998888888888877 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.022
       MFS_2 226 flillllfllaala.lgvlnglllYyltyvlg.ngsaasvfllvvtisallgiplwqplakrlgkkntyllgalltivllvlvlllqpsnlllflvllv 322
                 +++ll++f++ +l+ ++++ g+++Yy++ +   ++    + ++v    ++ +++  + +a+ +g  +++ll ++   ++++l+ ++  +++l+  +ll+
  CCD24337.1 255 LVKLLVIFMVDSLGsGFMTSGWMVYYYKNTFAmSAVGLGMTFFVSQFVMASSTIPSSIIARMFGPVRATLLVQIPSGIFSILIPFA--ESYLPISILLL 351
                 5678888888887626788999****9999987777777777777555555666678899********************999999..44444444444 PP

       MFS_2 323 iagfgvgva 331
                    f + ++
  CCD24337.1 352 NCHFLTTAM 360
                 333333333 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.045
       MFS_2 107 lrilytlfeipyvslvpvltkdydeRtsltsvrsflsvlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgt 193
                 ++ l+t++++    ++ +   ++++ t+++++ ++ +++  +++ i++++l+ +          +l +++ ++l++++ +i+++++ 
  CCD24337.1 353 CHFLTTAMDVTPRQILLTNIIKPKDLTKVMGIVNIGKTFSRCIGPIFTGILAKMNYL-------WLCYIISGSLVITADFILACWFL 432
                 556666666644443333335889999999999999999999999999999777776.......***************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3177.99
//
Query:       CCD24338.1  [L=225]
Description: hypothetical protein NDAI_0D00240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-36  125.6   2.1    1.7e-36  125.1   2.1    1.2  1  Ribosomal_S7  Ribosomal protein S7p/S5e


Domain annotation for each model (and alignments):
>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.1   2.1   9.7e-41   1.7e-36      16     149 .]      83     225 .]      72     225 .] 0.95

  Alignments for each domain:
  == domain 1  score: 125.1 bits;  conditional E-value: 9.7e-41
                   SSTTSBHHHHHHHHHSB....TTBHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHCS-SEEEEEEBSSSSBEEEEEEE-HHHHHHHHHHHHHHHH CS
  Ribosomal_S7  16 pkynselveklinklmk....dGkkslAekivygaldiieektkkdplevleeAlenvkPrvevksrrvGGatyqvpvevrpkRrqalAlrwiieaa 108
                    k++++++e+l+n lm+    +Gkk +A +iv+++l+ii+  t+++pl+v+++A+ n+ Pr++++++  GGa+ +++v+v+p Rr+++A+  ++ ++
    CCD24338.1  83 RKAQCPIIERLTNSLMMngrnNGKKLKALRIVKHTLEIINVLTDANPLQVVVDAIANTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGS 179
                   45899************99999************************************************************************998 PP

                   ...STSSSS-HHHHHHHHHHHHHTT-..SHHHHHHHHHHHHHHHTG CS
  Ribosomal_S7 109 ...rkrkeksmaekLaeElidAaege..gaavkkreethrmAeanr 149
                      ++r+ k++ae LaeEli+Aa+g+  ++a+kk++e++r+A++nr
    CCD24338.1 180 reaAFRNIKTIAETLAEELINAAKGSstSYAIKKKDELERVAKSNR 225
                   77799********************9999****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1780.81
//
Query:       CCD24339.1  [L=540]
Description: hypothetical protein NDAI_0D00250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   11.8   0.0         11    5.3   0.0    2.3  2  GCV_T     Aminomethyltransferase folate-binding domain


Domain annotation for each model (and alignments):
>> GCV_T  Aminomethyltransferase folate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0    0.0016        29      44      70 ..      67      93 ..      61     105 .. 0.88
   2 ?    5.3   0.0   0.00061        11      78     100 ..     148     170 ..     144     216 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0016
       GCV_T 44 DvShmgkievsGpdaaalLqrlltndi 70
                ++S  + i+++Gpda ++L+ ++t+++
  CCD24339.1 67 ELSNKSYIKIRGPDAPKFLNGTITSKL 93
                5788899*************9999876 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.00061
       GCV_T  78 atytlllnedGgvidDlivarld 100
                 ++yt lln +G  i Dliv+ + 
  CCD24339.1 148 GQYTGLLNGKGKLITDLIVYPTP 170
                 58*****************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4043.49
//
Query:       CCD24340.1  [L=512]
Description: hypothetical protein NDAI_0D00260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.1e-63  212.1   0.0    1.1e-62  211.4   0.0    1.3  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    2.1e-23   82.6   1.0    5.8e-23   81.2   1.0    1.8  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
     0.0017   17.8   0.2     0.0028   17.0   0.2    1.4  1  ATPase         KaiC
     0.0098   15.1   0.7      0.078   12.1   0.1    2.1  2  NB-ARC         NB-ARC domain
  ------ inclusion threshold ------
      0.037   13.9   0.2       0.12   12.3   0.0    1.9  2  NACHT          NACHT domain
      0.039   13.9   0.1       0.09   12.7   0.1    1.5  1  RsgA_GTPase    RsgA GTPase
      0.045   14.2   0.1       0.63   10.5   0.0    2.7  2  AAA            ATPase family associated with various cellular
       0.05   13.5   0.6       0.31   10.9   0.6    2.1  1  T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
       0.07   13.5   0.1       0.28   11.6   0.1    2.0  1  AAA_16         AAA ATPase domain
      0.096   13.1   0.0       0.23   11.9   0.0    1.7  1  RNA_helicase   RNA helicase
       0.18   11.8   0.1       0.49   10.4   0.1    1.8  1  TsaE           Threonylcarbamoyl adenosine biosynthesis prote
       0.51   10.7   4.3       0.49   10.7   0.2    2.6  3  AAA_19         AAA domain


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.4   0.0   7.7e-66   1.1e-62       1     213 []     171     389 ..     171     389 .. 0.96

  Alignments for each domain:
  == domain 1  score: 211.4 bits;  conditional E-value: 7.7e-66
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSS..EEEEEEESEEHHHHHHHHHHCHHSS.....GGGGEEEEEEETTS-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvisqslskqsnsdd..aiiyvgiGergnevaevleefpegt.....imkrtvlvantsnepvaareasiy 91 
                  Gi+v+D+l p+++G++++++g++gvGktv +q+l+++  +++   +++ g+Ger++e +++++e++e++       +++ lv+ ++nep+ ar ++++
   CCD24340.1 171 GIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHggFSVFTGVGERTREGNDLYREMKETGvinleGESKVALVFGQMNEPPGARARVAL 268
                  99*********************************998887457***********************6644444667********************* PP

                  HHHHHHHHHHH.TTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEETSSEEEEEEEEEEE-GGCSTTSHHHHHHHHHSS CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  92 tgitlAEyfrd.qgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagkapdrtGsvtivaavspaggDfsdpvttatlgitd 188
                  tg+t+AEyfrd +g++vll++d+++r+++A  e+s++lg++p++ gy+++l++++  l+ER++++  ++Gsvt+v+av+++++D++dp + +t++++d
   CCD24340.1 269 TGLTIAEYFRDeEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGVLQERITTT--KKGSVTSVQAVYVPADDLTDPAPATTFAHLD 364
                  ***********9*****************************************************..89***************************** PP

                  EEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 189 gfivLdkklaqrkhfPainvlvSvS 213
                  +++vL++++ + +++Pa+++l S S
   CCD24340.1 365 ATTVLSRSISELGIYPAVDPLDSNS 389
                  **********************987 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   1.0   3.9e-26   5.8e-23       3      69 .]      48     114 ..      46     114 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 3.9e-26
                    EEETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N   3 qviGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69 
                    +viG++vdv+f++g lp+i+nale++ +e+g+l+l+va++lge++Vr+i+m++t+Gl+rG++V +TG
     CCD24340.1  48 AVIGAIVDVHFDQGTLPAILNALEIKTPEGGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVFDTG 114
                    79****************************************************************8 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   1.9e-06    0.0028       2      85 ..     169     253 ..     168     298 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.9e-06
      ATPase   2 ktgIeglDeilkgGipegrvvlitGepGtGKtifalqFlikgaekygepgvfvtveepa...edlrenakslGwdlekleeegklai 85 
                 +tgI+  D +    + +g  + + G++G GKt+f ++ + + a+  g   vf  v e+    +dl++++k+ G+   + e++  l++
  CCD24340.1 169 ETGIKVVDLLA--PYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTregNDLYREMKETGVINLEGESKVALVF 253
                 68999999885..8999999*************************************999999*********986666666655555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   5.2e-05     0.078      23      55 ..     187     219 ..     173     248 .. 0.90
   2 ?    1.0   0.0      0.13     2e+02      50     101 ..     401     449 ..     392     453 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.2e-05
                 EEEEESTTSSHHHHHHHHCCSHCCCCCCBTEEE CS
      NB-ARC  23 valvGmgGvGKttlakqilnksdevegrFdsva 55 
                 ++l G +GvGKt+ +++ +n+ ++ +g F ++ 
  CCD24340.1 187 IGLFGGAGVGKTVFIQELINNIAKAHGGFSVFT 219
                 799******************999999998775 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.13
                 CBTEEEEEEEESXXHHHHHHHXXHHHHHCCCTTSSSS-STTSHHHHHHHHCC CS
      NB-ARC  50 rFdsvawvvvsktdkseeiletilkeLslseddleekeeveslkrklvrlLl 101
                 ++d+   v   +t + ++ l++i++ L+  e   + k +ve ++rk++r+L 
  CCD24340.1 401 HYDVATKV--QETLQAYKSLQDIIAILGMDELSEQDKLTVE-RARKIQRFLS 449
                 66665544..4666666667778888888877777777788.8999999886 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     8e-05      0.12       6      28 ..     190     212 ..     187     246 .. 0.80
   2 ?   -2.8   0.0       3.6   5.4e+03      60     105 ..     424     444 ..     407     454 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8e-05
                 EC-TTTCHHHHHHHHHHHHCTS- CS
       NACHT   6 qGeaGsGKTtLlqklalawaegk 28 
                  G aG+GKT+++q+l+  +a+ +
  CCD24340.1 190 FGGAGVGKTVFIQELINNIAKAH 212
                 699*****************988 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.6
                 CCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH........ CS
       NACHT  60 sqlpepaapvsevwavllelperlLlilDglDelvtdlgq..kekqpv 105
                   +                            Del+++++   ++++++
  CCD24340.1 424 ILGM---------------------------DELSEQDKLtvERARKI 444
                 4444...........................44444444333333333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1     6e-05      0.09      90     152 ..     175     237 ..     160     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 6e-05
                  HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTT CS
  RsgA_GTPase  90 leelkellkdktsvlvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaeg 152
                  ++ l+++ ++  + l G  GvGK+ +i +l+++   + g  s  +g G  T     l++  ++
   CCD24340.1 175 VDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKE 237
                  5667788888888899**********************************9988888865444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00042      0.63       3      74 ..     189     299 ..     187     309 .. 0.64
   2 ?   -0.2   0.0      0.86   1.3e+03      43      74 ..     405     434 ..     387     451 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
                 EESSTTSSHHHHHHHHHHHH.....THE...............EEEEETTTCSSS...............................STTHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel.....gve...............fleisgsellsk...............................yvgesekkirelf 50 
                 l+G  G+GKT +++ +++++     g++               +                                           v  +   i+e+f
  CCD24340.1 189 LFGGAGVGKTVFIQELINNIakahgGFSvftgvgertregndlY----------RemketgvinlegeskvalvfgqmneppgaraRVALTGLTIAEYF 277
                 89*****************7544432333334444444444441..........034444443344555555677777777777777888888888888 PP

                 HHHHHTSTSEEEEEETGGGHHHHH CS
         AAA  51 keakekakpsilfiDEidalaksr 74 
                 ++ +e +  + lfiD+i +++++ 
  CCD24340.1 278 RD-EEGQ-DVLLFIDNIFRFTQAG 299
                 77.4444.5889999887776655 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.86
                 HHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA  43 ekkirelfkeakekakpsilfiDEidalaksr 74 
                 + k++e++++ k+ +   i+ i  +d+l +++
  CCD24340.1 405 ATKVQETLQAYKSLQ--DIIAILGMDELSEQD 434
                 668888888888887..666666666665444 PP

>> T3SS_ATPase_C  T3SS EscN ATPase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   0.00021      0.31       2      28 ..     398     424 ..     397     459 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00021
  T3SS_ATPase_C   2 spehlqaarklrellatyqenedLini 28 
                     +eh++ a+k+ e l++y++ +d+i i
     CCD24340.1 398 GQEHYDVATKVQETLQAYKSLQDIIAI 424
                    68***********************98 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00019      0.28      27      62 ..     187     224 ..     173     315 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00019
      AAA_16  27 vllsGesGvGKsslvrellralekdggif..lrgkcdq 62 
                 + l G +GvGK+  ++el + + k++g f  ++g  ++
  CCD24340.1 187 IGLFGGAGVGKTVFIQELINNIAKAHGGFsvFTGVGER 224
                 557899*******************8888544444443 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00015      0.23       3      26 ..     189     212 ..     187     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00015
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l+G +g+GK+++++eL+++++k+ 
    CCD24340.1 189 LFGGAGVGKTVFIQELINNIAKAH 212
                   89******************9766 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00033      0.49      14      43 ..     174     208 ..     159     244 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00033
                 HHHCH.....TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  14 lakal.....gdvilLeGdLGaGKTtlvrglakal 43 
                 + + l     g  i L G  G+GKT+++++l++++
  CCD24340.1 174 VVDLLapyarGGKIGLFGGAGVGKTVFIQELINNI 208
                 444333333444599****************9986 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1         2   2.9e+03      48      71 ..       8      27 ..       4      96 .. 0.63
   2 ?   10.7   0.2   0.00033      0.49       9      38 ..     183     212 ..     177     220 .. 0.84
   3 ?    0.2   0.1      0.57   8.4e+02      68     118 ..     356     437 ..     320     447 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2
      AAA_19 48 vaftgrAakelrerlaalgaeatT 71
                 + t+ +a +l+++l  ++++  T
  CCD24340.1  8 TTSTRASATQLAKNL--MKRS--T 27
                566777777777766..2222..1 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00033
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelg 38 
                 + + + + +G+G GKT  +++ ++ + +++
  CCD24340.1 183 RGGKIGLFGGAGVGKTVFIQELINNIAKAH 212
                 56678899**************99888776 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.57
      AAA_19  68 eatTiHrlal.................................ldfddlltealelleeaeeekklqeee.llivDEfqdvdelq 118
                 +atT+ +l                                    +  d  t+  e l+     k lq+   +l  DE ++ d+l 
  CCD24340.1 356 PATTFAHLDAttvlsrsiselgiypavdpldsnsrlldaavvgQEHYDVATKVQETLQ---AYKSLQDIIaILGMDELSEQDKLT 437
                 3777766644666666667777777777776666666666655222233333334433...345555555578888888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3694.21
//
Query:       CCD24341.1  [L=867]
Description: hypothetical protein NDAI_0D00270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.5e-37  126.3   0.9      3e-36  124.3   0.9    2.1  1  JmjC        JmjC domain, hydroxylase
      1e-09   38.2   0.0    4.2e-09   36.2   0.0    2.2  1  JmjN        jmjN domain
     0.0021   17.9  14.1     0.0021   17.9  14.1    2.4  2  PHD         PHD-finger


Domain annotation for each model (and alignments):
>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.3   0.9     5e-40     3e-36       1     114 []     451     569 ..     451     569 .. 0.95

  Alignments for each domain:
  == domain 1  score: 124.3 bits;  conditional E-value: 5e-40
                 EEEEE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHH...HHCCSTTGCCTTTCEE-HHH..HHHTT---EEEEE-TT-EEEE- CS
        JmjC   1 wlylgmpksttpwhiedqglySinylhfgapkvWyiipeekkeklekvlskk...nskeqpdllrhkstlispkq..lekegipvyrfvqkpgefVfvf 94 
                 wly+g+++st++wh+edq ++S+ny+h g+pk+Wy+ip+ +   +++++ +     + +qpd l+++ +lisp++  ++ke+i++y+  q+p+e++++f
  CCD24341.1 451 WLYVGSKFSTFCWHMEDQYTLSANYQHEGSPKIWYSIPPIYYGIFNSLIFDIcpdLTFKQPDILHQLISLISPYDkrFQKERIKCYKAIQNPNEYIITF 549
                 9*********************************************6666666665679****************99********************** PP

                 TT-EEEEEESSSEEEEEEEE CS
        JmjC  95 pgayHsvfnlgfniaeavnf 114
                 p +yHs+fn+g+n++eavnf
  CCD24341.1 550 PHCYHSGFNTGYNLNEAVNF 569
                 *******************9 PP

>> JmjN  jmjN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0     7e-13   4.2e-09       1      34 []      14      49 ..      14      49 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 7e-13
                -EE---HHHHC-HHHHHHHHHH..HHCCCSEEEE-- CS
        JmjN  1 PvFyPTeeEFkdplkYiekiep..lgekyGIcKIvP 34
                P +yPT eEF++p++Y+++ +   lg +yGI K +P
  CCD24341.1 14 PSLYPTDEEFANPIEYLSRPAIrdLGLEYGILKLIP 49
                779***************977777***********9 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9  14.1   3.4e-07    0.0021       2      50 ..     276     324 ..     275     326 .. 0.85
   2 ?   -0.4   0.5      0.19   1.1e+03      15      23 ..     703     711 ..     689     713 .. 0.57

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.4e-07
                 BTTTTSTTSTTSCEE.EETTTSCEEETTTSSSTHSHHSHHSS.TBSSTTTH CS
         PHD   2 CavCkkksdeeeelv.qCdgCkrwfHqkClkppleseekpeg.ewlCekCk 50 
                 C++C++   ++e+ + +Cd+C+r fH +C+  ++ + + p+   w+C++C+
  CCD24341.1 276 CHICHR--FTKEFCIeFCDSCERPFHFACIASSKIKLDCPNPkTWVCKNCM 324
                 ******..445555538***************99999888878*******7 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.19
                 EEEETTTSC CS
         PHD  15 lvqCdgCkr 23 
                  ++C +Ck+
  CCD24341.1 703 DIYCTKCKT 711
                 356666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1024  (0.0571142); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.24s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 6216.56
//
Query:       CCD24342.1  [L=183]
Description: hypothetical protein NDAI_0D00280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-11   42.2   8.4    4.1e-08   33.1   8.4    2.1  1  Ilm1      Increased loss of mitochondrial DNA protein 1


Domain annotation for each model (and alignments):
>> Ilm1  Increased loss of mitochondrial DNA protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   8.4   2.3e-12   4.1e-08      10     161 ..      14     141 ..       5     144 .. 0.87

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.3e-12
        Ilm1  10 lalfhltlavylltspeviadqelvyllgealridaarsfskpssplAflgvlLlvlalvDlvllslneelavaeywgrqaplRlllffivslyiYlss 108
                    f lt+++  ++  ++i +++  ++l +a++++a  ++ + s  l + g+l+++ al D+v++  n++     y+++ +p+Rll ff+++  ++l +
  CCD24342.1  14 RITFLLTISYCCFKDVNLILQNTYFLILTQAMNLPA-LQLPQHSGQLGLFGILFIFSALNDIVAILENNKK----YLNSIVPIRLLGFFVLTGISFLWE 107
                 557999****************************98.568888999*****************99877766....89999*****************66 PP

        Ilm1 109 esswlaakgasyaaavsgvgleeLknrvvftfaflEmmfwfwvfvtLreErre 161
                 ++                     ++n+ vf + flEm + f ++ +LreE++e
  CCD24342.1 108 TN------------L-------FIHNNSVFIYSFLEMWINFVIYNSLREEKNE 141
                 52............2.......357889***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1512.77
//
Query:       CCD24343.1  [L=522]
Description: hypothetical protein NDAI_0D00290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-22   77.6   0.1    1.9e-21   76.2   0.1    1.7  1  Rpn3_C    Proteasome regulatory subunit C-terminal
    3.8e-20   72.4   1.3    6.6e-20   71.6   0.2    2.0  2  PCI       PCI domain


Domain annotation for each model (and alignments):
>> Rpn3_C  Proteasome regulatory subunit C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.1   2.1e-25   1.9e-21       1      67 []     450     518 ..     450     518 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 2.1e-25
      Rpn3_C   1 DvYsTkePqeaFdeRIkFclqlHneavkAMRYpedak.kkelesaeearerqqeeelakeled.edldD 67 
                 +vY TkePq+aFdeRI+F++qlH+e++ AMRYped+k ++ + ++++ + + ++ el +el d +d++D
  CCD24343.1 450 NVYGTKEPQTAFDERIRFVYQLHDECIVAMRYPEDKKlSNHNGKDDDGHGEFIDGELFDELDDfSDIED 518
                 8************************************977777777778889***********999998 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.63   5.6e+03      47      64 ..      38      55 ..      18      82 .. 0.72
   2 !   71.6   0.2   7.4e-24   6.6e-20       2     104 ..     344     446 ..     343     447 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.63
                HHHHHHHHHHCESEEEHH CS
         PCI 47 rerllrqvskiyssisle 64
                + +ll+++sk  ++++  
  CCD24343.1 38 IIHLLKEISKTTTTLDPR 55
                557777777777776544 PP

  == domain 2  score: 71.6 bits;  conditional E-value: 7.4e-24
                 HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESEEEHHHHHHHHTSSH.HHHHHHHHHHHHTTSSSEEEETTTT CS
         PCI   2 sysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyssislerlaklldlsv.devEkilvklIrdgeirakidqesg 99 
                 +y  l ka+r g+l++f ++  ++ ++ ++ dg++ql  +L+ +v+++ +r +s+ y++isl+++  +l l++ + +E++++++Irdg i+aki++e+g
  CCD24343.1 344 PYYNLSKAVRLGDLKKFTQTITKY-KKNFITDGNYQLCVRLRSNVIKTGIRIISLTYKKISLKDICLKLRLDSeQTAEYMVSRAIRDGVIEAKINHEKG 441
                 6889********************.777778******************************************999*********************** PP

                 EEEEC CS
         PCI 100 ivvfk 104
                  ++ +
  CCD24343.1 442 FIETS 446
                 99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4064.00
//
Query:       CCD24344.1  [L=459]
Description: hypothetical protein NDAI_0D00300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-58  198.0  10.2    1.3e-58  198.0  10.2    2.2  2  Peptidase_M48_N  CAAX prenyl protease N-terminal, five membra
    1.5e-42  145.6   0.5    5.3e-42  143.8   0.5    1.8  1  Peptidase_M48    Peptidase family M48
  ------ inclusion threshold ------
       0.03   13.9   0.0      0.054   13.1   0.0    1.3  1  DUF2268          Predicted Zn-dependent protease (DUF2268)
      0.051   13.4   0.1        0.1   12.5   0.1    1.4  1  SprT-like        SprT-like family


Domain annotation for each model (and alignments):
>> Peptidase_M48_N  CAAX prenyl protease N-terminal, five membrane helices
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.0  10.2   2.8e-62   1.3e-58       1     181 [.      40     224 ..      40     225 .. 0.99
   2 ?    0.4   1.0      0.11   5.1e+02      69     112 ..     301     342 ..     280     394 .. 0.69

  Alignments for each domain:
  == domain 1  score: 198.0 bits;  conditional E-value: 2.8e-62
  Peptidase_M48_N   1 qlrklketkkvPeeladaitkekfdksraYgldksrfglvsslyslilllallllgllpflwklsgkl.....lgldaeseilqslvfllllsl 89 
                      q+++l++++ +P+ l ++i+ke+f+ks++Y+++k++f++vs++++l+++la++ ++++p lw++ +kl     +++   s+++qsl fll+ls 
       CCD24344.1  40 QYKVLSKKE-LPPVLVNEIDKETFEKSEEYSKAKAKFSIVSDILGLVEKLAIIKYDVFPRLWHMGNKLatilpYKYRVVSTVAQSLWFLLVLSN 132
                      899***997.**********************************************************9999988899**************** PP

  Peptidase_M48_N  90 istlislPfslYstFviEekhGfnkqtlklfikdklkslllalviglpllaallwiiewggeyfylylwlfllvfslllmtiyPtlIaPLFn 181
                      ist+++lP+++Y++F++Eek+Gfnk t+kl+i+d++k+++l+++ig+p+l+a+l+i+e+++++f++y++lfll++++l+mt++P++I+PLFn
       CCD24344.1 133 ISTITGLPLAYYQHFILEEKFGFNKLTIKLWIMDMIKGIVLGTAIGGPILYAFLKIFEKFETNFIWYVCLFLLIVQILAMTLIPVYIMPLFN 224
                      *******************************************************************************************9 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
  Peptidase_M48_N  69 lgldaeseilqslvfllllslistlislPfslYstFviEekhGf 112
                      +g ++++ il  l++  + +l   ++sl  s+Y++    + +Gf
       CCD24344.1 301 IGHWQKNHILNMLFYSQIHTLA--IFSLFTSVYRNLSFYNAFGF 342
                      4446666666666665555554..77777777777766666666 PP

>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.8   0.5   1.2e-45   5.3e-42       1     193 [.     228     451 ..     228     454 .. 0.92

  Alignments for each domain:
  == domain 1  score: 143.8 bits;  conditional E-value: 1.2e-45
                    E--SSHHHHHHHHHHHHTT-..-EEEEEEE-GGGT....-EEEEESSS-E.EEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48   1 plreaelkevveelakeaglpkpltkvyvvnspkr....NAFalgggknk.rivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllas 91 
                    pl++++lke +e+lak++g+  pl+k++v++++kr    NA+++g   ++ rivl+d+L+ ++ s ee+ aVl+HE+GH++++h + +l+ s++ +
     CCD24344.1 228 PLEDGKLKESIENLAKSVGF--PLDKIFVIDGSKRsshsNAYFTGLPFTSkRIVLFDTLV-DNNSVEEITAVLAHEIGHWQKNHILNMLFYSQIHT 320
                    6899****************..*********99999999*******99888*********.*********************************** PP

                    HHHHHHHHHHTT-SHHHHHTT--S---HH..HHHHHHHHTT..............................HHHHHHHHHHHHHHHHTTT.HHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  92 illllglallisraeedaagafldalavl..iglliillfl..............................alSRkrEyqADeagvellkrakdlv 155
                    ++++ +++ ++++ +  +a++f  a +++   +  +    +                               +SR  EyqAD++++ l++ +++l 
     CCD24344.1 321 LAIFSLFTSVYRNLSFYNAFGFFIADTQMdiNVHTPTK--VfidsfpiiigfmffndlltplecgmqfmmsLISRLHEYQADAYAKALGY-TQHLC 413
                    ********************997665544003333333..255999********************************************.***** PP

                    HHHHHHHHHTT--S---HHHHHHS-SS--HHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 156 raliklakdlerqdvsaslrsellstHPplleRiqalk 193
                    rali+l+ +++++ + + l+s ++++HP l+eR+ al 
     CCD24344.1 414 RALIELQIKNLSTMNVDTLYSSYHYSHPTLAERLTALG 451
                    ***********************************995 PP

>> DUF2268  Predicted Zn-dependent protease (DUF2268)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.2e-05     0.054      22      76 ..     248     304 ..     231     313 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
     DUF2268  22 dvf.ilpvneenrklieekgykgglai.pdkiflfl.leneyskerlaallaHEyhHv 76 
                 ++  i++++ ++r+   +++y +gl + +++i+lf  l +++s e++ a+laHE+ H 
  CCD24344.1 248 PLDkIFVIDGSKRSS-HSNAYFTGLPFtSKRIVLFDtLVDNNSVEEITAVLAHEIGHW 304
                 333477888888555.55555666665155677776888999999**********996 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.2e-05       0.1      46      77 ..     275     306 ..     254     321 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
   SprT-like  46 hasIeLseklldsrsedrllntLaHElcHlal 77 
                 +++I L  +l+d++s +++  +LaHE+ H   
  CCD24344.1 275 SKRIVLFDTLVDNNSVEEITAVLAHEIGHWQK 306
                 679**************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3598.49
//
Query:       CCD24345.1  [L=279]
Description: hypothetical protein NDAI_0D00310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-33  116.3  23.4    1.4e-33  116.3  23.4    1.5  2  TRAM_LAG1_CLN8  TLC domain


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.16   2.8e+03      79      79 ..      27      27 ..       6      48 .. 0.50
   2 !  116.3  23.4   7.9e-38   1.4e-33       1     198 []      67     261 ..      67     261 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.16
  TRAM_LAG1_CLN8 79 H 79
                    H
      CCD24345.1 27 H 27
                    2 PP

  == domain 2  score: 116.3 bits;  conditional E-value: 7.9e-38
  TRAM_LAG1_CLN8   1 kfdervvslvqyllstvfglivlssspelwegyperilgathfllkayyllalgYfiydllvlllyekkrkdfvemliHhiitlvllvlsyvrnl 95 
                     +f++++vs++q+++s+++ +  l+  +    +++ +i+++ h    +++ l lgYfi+dllv+l++ k  +  +++l H++ +l+++++++ +++
      CCD24345.1  67 DFNVHTVSMIQAIISMIIIYPTLFLPN----DNTLNITTYHHHYTSMVASLTLGYFIWDLLVCLKHFKLYG--FQFLGHAVGALYVMIIAL-KPF 154
                     69******************9999997....5566777777777777***********************9..******************.*** PP

  TRAM_LAG1_CLN8  96 grvglvvlllhelsdpflnlrkilsylkkk.sks.....sklvlfngllfllsFfvcRlvllpylillsildvaklslstaplwlpliflilllv 184
                     ++ +++ ++l+e+s+pf+n+++++++l +  + +     ++  + ngl++l++Ff++R+ ++++ +l  + ++++++ ++ pl + +i++  +++
      CCD24345.1 155 CQPWIGKFVLYEASTPFVNINWFIIQLTDPiT-KkcvipTWVNVLNGLMLLVVFFLVRIAWGTLATLMIVKNMWHVK-HQIPLISAFILMSINVL 247
                     ***************************66653.3488888999999***************************9844.44567777777777788 PP

  TRAM_LAG1_CLN8 185 LqllnlyWfylivk 198
                     L+ ln++Wf++++k
      CCD24345.1 248 LNGLNFVWFSKMIK 261
                     9***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2231.39
//
Query:       CCD24346.1  [L=428]
Description: hypothetical protein NDAI_0D00320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-73  246.1   0.9      7e-73  245.6   0.9    1.2  1  PfkB          pfkB family carbohydrate kinase
    0.00034   20.1   0.0    0.00056   19.4   0.0    1.3  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
      0.048   14.2   0.4      0.075   13.6   0.4    1.3  1  ANAPC1        Anaphase-promoting complex subunit 1
       0.13   12.0   0.0       0.27   11.0   0.0    1.6  1  AMP_N         Aminopeptidase P, N-terminal domain


Domain annotation for each model (and alignments):
>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.6   0.9   1.6e-76     7e-73       8     300 ..     119     422 ..     111     424 .. 0.96

  Alignments for each domain:
  == domain 1  score: 245.6 bits;  conditional E-value: 1.6e-76
                 EEEEEEEEEECSSH..TTSEEEESEEEEEEESHHHHHHHHHHHTT.....-EEEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEETT CS
        PfkB   8 Gealidliavsekl..egelvevktveksaGGagaNvAvalarlg.....advafigavGdDnfGeflleelkkegvdtdyvkidedtrtglalivvde 99 
                 + +l+d++ ++ek   ++e  + ++v++ aGGa++N+A+++a+       ++v ++g vG+D+f+e ll+e+kk+gv  + ++i+ d  tg++++++++
  CCD24346.1 119 DAILVDASSNDEKMkiFDEILTFPDVKFVAGGAAQNTARGAAYILgsqktNQVGYFGSVGNDKFSENLLNENKKAGV-LSLYQIQSDIGTGKCAALITG 216
                 55679999999999*****************************999*******************************.668888**************9 PP

                 TSEEEEEEEEGGGGGHHHHHHHHHHHHHGCTSEEEEESEECTTSHHHHHHHHHHHHHHTTEEEEEECESSSHH.HHHHHHHHHCTESEEEEEHHHHHHH CS
        PfkB 100 dgertivfnrgaaadltkeeleededlleeadllyisgllsselpeavleelaeaaknggtfdpnlldplgaq.fkeallellaladllkpneeEleal 197
                 + +r++v+++gaa+++++++le +++ +++a+l+y++g++ +++pea++ + ++a++ g+  ++nl++p+++q fk+al ++l++a+++++ne+E+e  
  CCD24346.1 217 H-DRSLVTDLGAANHFKPSHLEANWEFVQNAKLFYVGGFHLTVSPEAIVLLGKHAKETGKPLVLNLSAPFIPQfFKDALVKVLPYATVVIGNESEAESY 314
                 7.9************************************************************************************************ PP

                 HTSCT..HSHHHHHHHHHHHHHTTS.SEEEEEEGGGEEEEEE..TTEEEEEEE.SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHT CS
        PfkB 198 tgekl..edieealaalhklkakga.ktvvvtlGkeGalvve..kdgelkvpavpkvkvvDttGAGDsfvggflaallegksleealrfanavAalvvq 291
                 +++ +   d ++++a ++ ++     ktv++t+G e+++vv+  ++ ++ v+++ +  +vDt+GAGD+f+ggf+a+l++gk+le+++ +++++Aal++q
  CCD24346.1 315 AESFGldCDKKDLVAIAKSIVGNDDkKTVIFTHGLEPTVVVStkGVSTFAVKPLESSSIVDTNGAGDAFAGGFMAGLTQGKDLETCIDMGQWLAALSIQ 413
                 ***99999999999999998877778************************************************************************* PP

                 SSSSSTCSC CS
        PfkB 292 kkgaiaslp 300
                 + g++++++
  CCD24346.1 414 EIGPSYPTE 422
                 ***998765 PP

>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.2e-07   0.00056     110     225 ..     292     405 ..     277     417 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.2e-07
                   HHHHHHTGGG-SEEE-BHHHHHHHHT.---S.SHHHHHHHHHHHHH.TT-SEEEEEEGGS-SSSEEEEEEEETSSEEEEEEEE----S...--BTHH CS
  Phos_pyr_kin 110 ealkeeLlplatvitPNlpEaeaLlg.ekik.teedmkeaakkllk.lgakaVlikGghlegeeavvtdvlydgeeveeleaerietk...nthGtG 200
                   +al + +lp atv++ N  Eae  ++   ++ +++d+ + ak+++    +k+V+ + g    e +    v++++++v ++  + +e++   +t+G+G
    CCD24346.1 292 DALVK-VLPYATVVIGNESEAESYAEsFGLDcDKKDLVAIAKSIVGnDDKKTVIFTHGL---EPT----VVVSTKGVSTFAVKPLESSsivDTNGAG 380
                   55665.99****************996444468889999****9995667777766664...233....455555555555555554312289**** PP

                   HHHHHHHHHHHHCTSSHHHHHHHHH CS
  Phos_pyr_kin 201 CtlssaiaaelakgesleeAvkkAk 225
                   ++++    a l +g++le+ +++++
    CCD24346.1 381 DAFAGGFMAGLTQGKDLETCIDMGQ 405
                   *******************999886 PP

>> ANAPC1  Anaphase-promoting complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.4   1.7e-05     0.075      76     130 .]      39     106 ..       7     106 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.7e-05
      ANAPC1  76 sqtssqkttfstesrgspkrlsltlsstles.............kkdsslPslfsLtdPlsevglvvt 130
                 +++++ +++ s  s++++++l++t++st ++             +++++ P l++L +Pl +++++vt
  CCD24346.1  39 QHYHHYNFNSSYYSTTNSASLRSTSTSTSTPspieilkfimstaSTTKEFPPLICLGNPLLDLQATVT 106
                 333333334444466666666666666655577999*****99666666**************99986 PP

>> AMP_N  Aminopeptidase P, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   5.9e-05      0.27      29      99 ..     234     321 ..     210     345 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 5.9e-05
                 ET.TEE------HHHHHHH---...-SS-EEEEEESSEEEE...EEEE-.............---HHHHHHH----HHHHHHHHHT-S CS
       AMP_N  29 sg.dveypFrqnsdFlYltGfn...epdavlvlekeedkkehkstLfvp.............rkdpekelWdGarlgleeakelfgvd 99 
                 s+ +++ +F qn +++Y+ Gf     p+a+++l k+ ++  + ++L +              +  p++ +  G+ ++ e+++e fg d
  CCD24346.1 234 SHlEANWEFVQNAKLFYVGGFHltvSPEAIVLLGKHAKETGKPLVLNLSapfipqffkdalvKVLPYATVVIGNESEAESYAESFGLD 321
                 4458899**************99999*******8765444444444333335545555555555555666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3119.45
//
Query:       CCD24347.1  [L=744]
Description: hypothetical protein NDAI_0D00330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-50  170.5  31.9      4e-28   98.3   6.2    2.8  3  Na_Ca_ex  Sodium/calcium exchanger protein
    1.8e-06   27.9   4.1       0.16   11.9   0.0    3.7  3  PIG-P     PIG-P


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   6.2   4.5e-32     4e-28       2     149 ..      28     199 ..      27     201 .. 0.81
   2 ?   -2.2   0.4      0.41   3.7e+03     107     120 ..     491     504 ..     419     518 .. 0.65
   3 !   83.6  11.4   1.5e-27   1.3e-23       3     148 ..     550     736 ..     548     739 .. 0.86

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 4.5e-32
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH..................TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHT.........TTHHHHHHHHHH CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiaks..................lgisgsvlGltllAlgnslpElissiiaalt.........gevdlaignvlG 73 
                  +++++ ++ll+++++d+l++++++i++                   ++ sg ++++ ll+++ns+p+l+s+++++ t         + + l+ig+vlG
  CCD24347.1  28 IIHVILSFVLLGMCASDYLCPNVAQISELnrssvstrrrnsrtqdnsTNSSGVLMAV-LLSWCNSSPDLFSNLMSWTTtpkssdpslNAAALSIGEVLG 125
                 5799***********************645667777777777777777777755555.*******************878777766555********** PP

                 HHHHHHHTHHHHHHHHHH......BTTSSCECCHHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  74 snifnlllviGlialigs......lkvdseslkldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvls 149
                 ++ ++l++v G+i++++s       k ++++l  dl  + ++a+++ ++++ l       +r+t+l++l+++++Y+ ylv +
  CCD24347.1 126 ACGIILCIVEGSIFIVMSrtnisiNKLQRRNLLKDL-SFTTIAMCF-MTYISLR------NRVTILNCLLMCFVYVTYLVGK 199
                 ******************999554344444444444.556666666.5566667......*******************965 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.41
                 HHHHHHHHHHHHHT CS
    Na_Ca_ex 107 llvallllllvlll 120
                 +++al+ ++lv+ +
  CCD24347.1 491 SIIALCYIVLVISF 504
                 23444444444443 PP

  == domain 3  score: 83.6 bits;  conditional E-value: 1.5e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHH..................TTTHHHHHHHHHHHHHHHHHTHH CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaal..................tgevdlaignvlGsnifnlllvi 83 
                  ++++ s+l isv+a+ l++++e +++++gis+++lGlt++A+gns+ +lis+i++++                  t+   ++i ++lG++++n +++i
  CCD24347.1 550 SIGILNSILYISVIANSLIEMMEIYQSITGISKAILGLTIFAWGNSISDLISNIAMCRlylrvphqddiehitkiaTKFFIISITSCLGGVMLNSMGGI 648
                 5799******************************************************88888877776666555446699999*************** PP

                 HHHHHHHH................BTTSSCECCHHHHHHHHHHHHHHHHHHHTCHHHHH........HTEEHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  84 Glialigs................lkvdseslkldlgllllvallllllvlllllplfv........pgrltvleglvllllYalylvl 148
                 G+++li++                + +++es + + + +++v+++ ++++l++l++ f+          r ++l g++++ ++++ ++ 
  CCD24347.1 649 GFSGLIAMlfihkgsnywwflryvELKEGES-TTNYNHKFIVSCIGIIIQLIILIIIFGgpdqvrewAQRKMRLLGIIMCNIWGVATLC 736
                 ********87766666666666643444444.5666679*****************999********9999*************99876 PP

>> PIG-P  PIG-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0018        16      38      87 ..      13      62 ..       7      89 .. 0.79
   2 !   11.9   0.0   1.8e-05      0.16      42     117 ..     177     248 ..     161     250 .. 0.77
   3 !    9.5   0.4   9.9e-05      0.88      22     121 .]     465     559 ..     449     559 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0018
       PIG-P 38 yypnryWalavpayllmlvlyiyvalaslnlevltppldsletivDeaak 87
                +ypn  +++++ + +++ v++ +v+l ++  ++l p++ +++ +  ++ +
  CCD24347.1 13 LYPNASYSFTFIIPSIIHVILSFVLLGMCASDYLCPNVAQISELNRSSVS 62
                69**9999999999999999999999999999*****9999887666554 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 1.8e-05
       PIG-P  42 ryWalavpayllmlvlyiyvalaslnlevltppldsletivDeaakveeeeeeeelkeyaseetdavmDlpigeVn 117
                 r+ + ++ ++l+++v ++y++  + + e +  ++++ e+i+ e+ +    +++e+++e  + + d++mDl+ ++ n
  CCD24347.1 177 RNRVTILNCLLMCFVYVTYLVGKFSHNESKFISINDEENIIHEHGS----ASSEQIDEQMEASSDPFMDLSTNQLN 248
                 555566667777666666655555555588888999********96....78999***************998876 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 9.9e-05
       PIG-P  22 lwallPeevlhalgityypnryWalavpayllmlvlyiyvalaslnlevltppldsletivDeaakveeeeeeeelkeyaseetdavmDlpigeVnevl 120
                 l+ ++P  +l++l       r+W +++p+++  +++yi+++  ++++  + ++++ + t  D+ ++++e++++++  e   + + ++  l+ig  n +l
  CCD24347.1 465 LCPFVPYFLLSSLLF--REPRMWLITLPSII--ALCYIVLVISFYQTIRSHNKFSIIITTADQESEINEKSQSRRSIES-LNTIINITFLSIGILNSIL 558
                 555666666666622..3349*******975..5667777778888867788899999999999986555555544444.4556678889999999999 PP

       PIG-P 121 Y 121
                 Y
  CCD24347.1 559 Y 559
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1087  (0.060628); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 5099.68
//
Query:       CCD24348.1  [L=375]
Description: hypothetical protein NDAI_0D00340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-35  122.6   0.0    3.8e-35  120.8   0.0    1.8  2  Lipase_3       Lipase (class 3)
  ------ inclusion threshold ------
      0.027   14.0   1.0        1.8    8.1   0.0    2.8  3  DUF2974        Protein of unknown function (DUF2974)
      0.047   13.5   0.0      0.088   12.6   0.0    1.4  1  Abhydrolase_5  Alpha/beta hydrolase family
      0.054   13.4   0.0       0.12   12.3   0.0    1.5  1  DUF3173        Domain of unknown function (DUF3173)
       0.15   12.6   0.0       0.22   12.1   0.0    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8   0.0   1.1e-38   3.8e-35       2     141 ..     144     309 ..     143     310 .. 0.95
   2 ?   -1.9   0.0      0.77   2.7e+03      42      71 ..     340     371 ..     326     371 .. 0.73

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 1.1e-38
                 EEE----------------EEE-HHHH-G..............TT-EEEHHHHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHH CS
    Lipase_3   2 vafRGtesakdwltdldfslteakellek..............eggkvhsgfleayeeslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldl 86 
                  afR +++++dw++d+++s+t+ ++++++              +++ +h+gf ++ + +l   +l++l+++l++yp+y  +vtGHSLG+alA++a+++l
  CCD24348.1 144 CAFRSSTTIQDWFSDFEISPTKWNPVCVDeykkmiergiikecKDCMIHRGFSKFSR-TLGRFFLNKLENILRQYPDYHSIVTGHSLGAALASMAGIEL 241
                 69************************999***************************9.***************************************** PP

                 HHTT-SS---EEEEEES----B-HHHHHHHH.................T-TTEEEEEEEETT--GGG-S-SS CS
    Lipase_3  87 vengenekkkvtvvtfGqPrvgnkefaklvd.................sqlnkkvlrvvntnDivPrlppld 141
                 + +g     +++v+t+++Pr +n e++++vd                  +l k ++r+++t+D++P++pp++
  CCD24348.1 242 RLRG----YEPSVITYATPRLFNNEMKEWVDelfhskelhdtyvskgeMKLDKGYYRIIHTRDYIPMVPPFY 309
                 ****....88*********************9999999999888887766777****************986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.77
                 HHHS-HHHHHHHHHHHHHHHTT..-EEEEEEE CS
    Lipase_3  42 ayeeslreqvlkelkrllekyp..eysivvtG 71 
                 a ++s+r+++ ++++++l+  +  +y i ++G
  CCD24348.1 340 ASKQSIRDDLIEKVEEWLRTEEhrSYFINLAG 371
                 45579999999999997755443378777766 PP

>> DUF2974  Protein of unknown function (DUF2974)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.82   2.9e+03     127     144 ..      42      59 ..      35      65 .. 0.78
   2 ?    3.4   0.0     0.014        49      29      68 ..     132     170 ..     117     198 .. 0.73
   3 ?    8.1   0.0   0.00049       1.8      75     103 ..     210     239 ..     204     245 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.82
     DUF2974 127 evveseeykkikskikkl 144
                 +v ++++y+++++ki k+
  CCD24348.1  42 SVSSRQQYQANSKKIVKI 59 
                 566789999999999887 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.014
     DUF2974  29 aatfrleedtlvvaFRGTddtlvgWkedfnmafrsevpaq 68 
                 +++++ e+++ + aFR    t+ +W  df+++ +++ p  
  CCD24348.1 132 YVAIDHEKKVVICAFRSS-TTIQDWFSDFEISPTKWNPVC 170
                 5667778899999***98.89**********988877754 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00049
     DUF2974  75 lnkileesegk.iylgGhSkGGnlAvyaam 103
                 l++il+++++   +++GhS G+ lA  a +
  CCD24348.1 210 LENILRQYPDYhSIVTGHSLGAALASMAGI 239
                 78999***996599***********99876 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.5e-05     0.088      41      73 ..     205     236 ..     192     253 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.5e-05
  Abhydrolase_5  41 lgknkaeeiikeapklekfvvgGhslGGvvasr 73 
                    +  nk e+i++++p+  + +v+GhslG ++as 
     CCD24348.1 205 FFLNKLENILRQYPDY-HSIVTGHSLGAALASM 236
                    66799*********95.599********99985 PP

>> DUF3173  Domain of unknown function (DUF3173)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.3e-05      0.12      13      38 ..     174     199 ..     174     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.3e-05
     DUF3173  13 fkehtArdiIrqaKkilVkkGysfYn 38 
                 +k+   r iI+++K  ++++G+s ++
  CCD24348.1 174 YKKMIERGIIKECKDCMIHRGFSKFS 199
                 77778899**************9986 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.2e-05      0.22      65     103 ..     218     258 ..     192     342 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.2e-05
                    TSE..EEEEETCHHHHHHHHHHCC..EE...EEES-..----TT CS
  Abhydrolase_6  65 gpv..vlvGHSlGGalalaaaplalvvg...vlldppptalpag 103
                    ++   ++ GHSlG+ala++a+  ++++g    ++     a+p +
     CCD24348.1 218 PDYhsIVTGHSLGAALASMAGIELRLRGyepSVITY---ATPRL 258
                    333459*************77777777766633333...33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2685.09
//
Query:       CCD24349.1  [L=79]
Description: hypothetical protein NDAI_0D00350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-18   67.1   6.6    2.2e-18   66.9   6.6    1.0  1  DUF5137   Protein of unknown function (DUF5137)


Domain annotation for each model (and alignments):
>> DUF5137  Protein of unknown function (DUF5137)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   6.6   1.2e-22   2.2e-18       1      72 [.       1      71 [.       1      78 [. 0.94

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 1.2e-22
     DUF5137  1 MeeeseDpYeeyYlnrssaeskeeaeelqqiqaeeiYeRSlqpek.lPaLkpiqketasanlkrkraeesdsk 72
                Me++  D++eeyYlnr s++++e+++++++ q+++iY+R++q+++ ++++k++q+e+as+++++kr++++++ 
  CCD24349.1  1 MEGN--DTVEEYYLNRLSSKDLEQQQQFKKLQEQQIYQRNSQAQQnMSVVKIVQAEQASTTNGQKRVRNNMDV 71
                8999..*************************************999************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3356  (0.187183); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 616.58
//
Query:       CCD24350.1  [L=1116]
Description: hypothetical protein NDAI_0D00360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.3e-112  373.6   0.0    1.8e-84  282.5   0.0    2.4  2  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    1.9e-40  138.0   0.2      4e-40  137.0   0.2    1.6  1  CPSase_L_D3      Carbamoyl-phosphate synthetase large chain, 
    1.5e-18   66.9   0.1    1.7e-08   34.2   0.0    2.4  2  ATP-grasp        ATP-grasp domain
    1.6e-15   57.0   0.0    6.7e-08   32.3   0.0    2.7  2  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T
    1.9e-15   56.9   0.6    2.8e-07   30.3   0.0    2.4  2  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    3.3e-05   23.6   0.1      0.049   13.2   0.0    2.5  2  RimK             RimK-like ATP-grasp domain
     0.0012   18.6   0.2        2.6    7.8   0.0    3.0  2  GARS_A           Phosphoribosylglycinamide synthetase, ATP-gr
     0.0038   16.7   0.0      0.086   12.3   0.1    2.5  2  ATP-grasp_5      ATP-grasp domain
  ------ inclusion threshold ------
      0.013   15.7   0.0       0.05   13.8   0.0    2.1  1  MGS              MGS-like domain
      0.073   12.9   0.2       0.22   11.3   0.0    1.9  2  MCPsignal        Methyl-accepting chemotaxis protein (MCP) si


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.5   0.0     1e-87   1.8e-84       1     210 [.     149     352 ..     149     353 .. 0.99
   2 !   88.8   0.0   1.8e-28   3.3e-25       1     203 [.     690     886 ..     690     891 .. 0.94

  Alignments for each domain:
  == domain 1  score: 282.5 bits;  conditional E-value: 1e-87
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D++ +++alk+in+p+++s a+  et+++al++a++++yPvi+++a++lGG+G+++a+n ee+++l++++l+ a      +q+lvekslkg+ke+E+e
   CCD24350.1 149 DRDLFAQALKEINIPIAESIAC--ETIDQALDAAEQVKYPVIVRSAYALGGLGSGFANNAEEMKQLASQSLSLA------PQILVEKSLKGWKEVEYE 238
                  99********************..**************************************************......8***************** PP

                  EEEETTS-EEEEEEEEECCEC..TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS-- CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql..rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGld 194
                  v+rD+ gn+itvc++en+++l  +t+++++ APsqtL+dee+++lr+aa+k++r++gv+g+++v+++l+p+  +y+viEvN+Rls++sala+kaTG++
   CCD24350.1 239 VVRDRVGNCITVCNMENFDPLgiHTGDSMVFAPSQTLSDEEYHMLRSAAIKIIRHLGVIGECNVQYALQPNGLDYCVIEVNARLSRSSALASKATGYP 336
                  ************************************************************************************************** PP

                  HHHHHHHHHTT--GCG CS
  CPSase_L_D2 195 lvkeaakialgekLee 210
                  l+++aakialg++L+e
   CCD24350.1 337 LAYTAAKIALGYTLPE 352
                  **************97 PP

  == domain 2  score: 88.8 bits;  conditional E-value: 1.8e-28
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  D+++++++l+ i+v   + s+   +++eea  +a+++g+Pv+i++++ l G  m v++neeel++ ++ a++ ++    ++ v + k+++g +ei+v+
   CCD24350.1 690 DRHKFSSILDSIEVGQPDWSEL--SSVEEANVFAAKVGFPVLIRPSYVLSGAAMSVVNNEEELKNKLTLASDVSP----DHPVVMSKFIEGAQEIDVD 781
                  8999*********999998888..9*************************************************6....9****************** PP

                  EEEETTS-EEEEEEEEECCEC.TCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--H CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslql.rtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldl 195
                   ++ +    i+  +     +  + ++   + P qtL+d+    l+e a kv+ + +++g  +++ + d  +k   viE N R s++ +  +k+ G + 
   CCD24350.1 782 AVAYKGHVLIHAISEHVENAGvHSGDASLILPPQTLSDKVKADLKEIADKVAVAWKITGPFNMQIIKDG-DKPLKVIECNIRASRSFPFVSKVLGTNF 878
                  ***9999999887765555446******************************************99997.9*************************** PP

                  HHHHHHHH CS
  CPSase_L_D2 196 vkeaakia 203
                  +++a+k  
   CCD24350.1 879 IEIAVKAF 886
                  **999965 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.2   2.2e-43     4e-40       2     122 .]     439     564 ..     438     564 .. 0.95

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 2.2e-43
  CPSase_L_D3   2 elkeptdeRifaiaeal.rrglsveeiheltkidpwFLekleelvelekelkkkkk..eldeellreakklGfsDkqiaell...eeeeeeevrelrk 93 
                  +l+ ptd+R++ai +al +++++ve++h+ltkid+wFL+k+ ++v++ kel++ +k  +l++++l++akk+GfsDkqia+ +   +  +e +vr+lrk
   CCD24350.1 439 ALSVPTDRRVLAIGQALiHENYTVEKVHDLTKIDKWFLHKCMNIVKMYKELEQVEKlnDLTQDILQRAKKVGFSDKQIASSIkdpN-VNEFDVRKLRK 535
                  6999*************99***********************************9999*********************8876743.67788****** PP

  CPSase_L_D3  94 klgilpvykrvDtcAaeFeaetpYlYstY 122
                  + gi p +kr+Dt+AaeF+a+t+YlY+tY
   CCD24350.1 536 SFGIIPFVKRIDTLAAEFPATTNYLYTTY 564
                  ****************************9 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   9.6e-12   1.7e-08       2     146 ..     158     307 ..     157     325 .. 0.85
   2 !   30.3   0.0   1.5e-10   2.7e-07       4     158 ..     701     861 ..     698     866 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 9.6e-12
                 HTTT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC..GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEE CS
   ATP-grasp   2 eklglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal..keekvivEefvpfekElsvlvvrsaeGetafypvvet 98 
                 ++ ++p+++ +a e+ +++ +aae++++pv+v+ +  +  G G+ + +++e+++q++++    + +++vE+  +  kE+   vvr++ G+  ++  +e+
  CCD24350.1 158 KEINIPIAESIACETIDQALDAAEQVKYPVIVR-SAYALGGLGSGFANNAEEMKQLASQSlsLAPQILVEKSLKGWKEVEYEVVRDRVGNCITVCNMEN 255
                 7899*****************************.999******************99998788899***************************99**** PP

                 EEETTEEE...EEEECEE-SCHHH.HHHHHHHHHHHHHHTSSEEEEEEEEEE CS
   ATP-grasp  99 vqedgilr...lsvapaevsekaq.kkaeeiakkiveeLggvGvfavElFvl 146
                     gi     +++ap++  ++++ +  ++ a ki+++Lg++G   v   ++
  CCD24350.1 256 FDPLGIHTgdsMVFAPSQTLSDEEyHMLRSAAIKIIRHLGVIGECNVQYALQ 307
                 *99999853337899988776655055566666**********877766555 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 1.5e-10
                 TT--B-EEEEECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC....GTTCEEEEE----SEEEEEEEEEETTC-EEE--EEEE CS
   ATP-grasp   4 lglpvprflaveskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal....keekvivEefvpfekElsvlvvrsaeGetafypvvet 98 
                  ++  p++  ++s ee++ +a+++g+pv+++ +    +G   svv++ee+l++ l+ +     +++v++ +f++  +E+ v +v + +G++ + ++ e+
  CCD24350.1 701 IEVGQPDWSELSSVEEANVFAAKVGFPVLIR-PSYVLSGAAMSVVNNEEELKNKLTLAsdvsPDHPVVMSKFIEGAQEIDVDAV-AYKGHVLIHAISEH 797
                 567789*************************.99999****************999998888899**************98666.789*9999999999 PP

                 EEETTE....EEEEEECEE-SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEES CS
   ATP-grasp  99 vqedgi....lrlsvapaevsekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElap 158
                 v++ g+      l + p+++s+k ++  +eia k++ +  + G f + +    d+ l v E   
  CCD24350.1 798 VENAGVhsgdASLILPPQTLSDKVKADLKEIADKVAVAWKITGPFNMQIIKDGDKPLKVIECNI 861
                 9976551111678999*****************************9988766555477766655 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   7.6e-08   0.00014      49     128 ..     283     365 ..     272     368 .. 0.86
   2 !   32.3   0.0   3.7e-11   6.7e-08       5     115 ..     766     894 ..     763     909 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7.6e-08
  ATPgrasp_Ter  49 lielaerlaeefgldglvnvQvrededg..pkLLEiNpRasGGlg.ysalaGvnlpylalklllgleteeveepeeglrvrei 128
                   l ++a ++++++g+ g  nvQ+  + +g  ++++E+N+R s      s ++G  l+y a+k +lg   +e ++p ++ +v++ 
    CCD24350.1 283 LRSAAIKIIRHLGVIGECNVQYALQPNGldYCVIEVNARLSRSSAlASKATGYPLAYTAAKIALGYTLPELPNPITKTTVANF 365
                   567899******************99998899********96555156777***************99999999999998875 PP

  == domain 2  score: 32.3 bits;  conditional E-value: 3.7e-11
  ATPgrasp_Ter   5 llvmeyLeg.pEySvDvlaekgevl.aavpRrKekgglq...........elek..deelielaerlaeefgldglvnvQvrededg.pkLLEiNpR 85 
                   +++ +++eg +E+ vD +a kg+vl  a+    e+ g++           +l++  +++l e+a ++a + +++g +n+Q+ +d+d+ +k++E N R
    CCD24350.1 766 VVMSKFIEGaQEIDVDAVAYKGHVLiHAISEHVENAGVHsgdaslilppqTLSDkvKADLKEIADKVAVAWKITGPFNMQIIKDGDKpLKVIECNIR 862
                   566677887579999999999999835666666655555567778899986655226899************************99999******** PP

  ATPgrasp_Ter  86 asGGlgy.salaGvnlpylalklllgl.etee 115
                   as  +   s + G n++++a+k++lg  ++++
    CCD24350.1 863 ASRSFPFvSKVLGTNFIEIAVKAFLGGdKVPK 894
                   ****98526677**************643333 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.6e-10   2.8e-07      29     173 ..     177     319 ..     158     321 .. 0.84
   2 !   24.5   0.1   8.9e-09   1.6e-05      19     153 ..     707     840 ..     697     861 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.6e-10
                      HHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS-HHHHHC.TT CS
  Dala_Dala_lig_C  29 ekveeelgypvfVKpareGSSvGvskveseeelkeaieeafkydekvlvEeai.egreievavlgneklevsevgeivvkkgfydyeakysddk 121
                       +  e+++ypv+V++a +   +G   ++++ee+k+  +++++   ++lvE+ +   +e+e  v+     +v +++ +   ++f d    +++d+
       CCD24350.1 177 LDAAEQVKYPVIVRSAYALGGLGSGFANNAEEMKQLASQSLSLAPQILVEKSLkGWKEVEYEVVR---DRVGNCITVCNMENF-DPLGIHTGDS 266
                      456799************99*********************************6679********...567777766665555.5445556677 PP

                      -EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTT.EEEEEEEE CS
  Dala_Dala_lig_C 122 aqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteeg.eivlnEvN 173
                      + +    +l++e+++ ++ +a+k+ + l++ G + v + l+ +g +  + EvN
       CCD24350.1 267 MVFAPSQTLSDEEYHMLRSAAIKIIRHLGVIGECNVQYALQPNGlDYCVIEVN 319
                      777777889*******************************9998445677888 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 8.9e-09
                      HHCH-H-.HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHH..HTT-SCEEEEE--.ESEEEEE.EEEETSSCEEEEEEEEE-S CS
  Dala_Dala_lig_C  19 eakeekk.ellekveeelgypvfVKpareGSSvGvskveseeelkeaieea..fkydekvlvEeai.egreiev.avlgneklevsevgeivvk 107
                      +++e ++ e  +   +++g+pv+++p+   S   +s v++eeelk+ +  a  ++ d+ v++ ++i  ++ei+v av  ++++ ++ + e+v +
       CCD24350.1 707 DWSELSSvEEANVFAAKVGFPVLIRPSYVLSGAAMSVVNNEEELKNKLTLAsdVSPDHPVVMSKFIeGAQEIDVdAVAYKGHVLIHAISEHVEN 800
                      55554442445566799*****************************999882245699********8899****55666999********9999 PP

                      SSSS-HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--S CS
  Dala_Dala_lig_C 108 kgfydyeakysddkaqlevpaklekeveekiqelalkaykaldlrG 153
                       g+        +d++ +  p +l+++v++ ++e+a k+  a +++G
       CCD24350.1 801 AGVHS------GDASLILPPQTLSDKVKADLKEIADKVAVAWKITG 840
                      99864......45556777888888888888888888766666665 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.7e-05     0.049      10     165 ..     156     320 ..     147     339 .. 0.68
   2 !    7.8   0.0    0.0013       2.3       2     100 ..     689     790 ..     688     883 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.7e-05
                 HHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH...GGG--EEEEE--SS-SEEEEEEEETTEEEEEEEE CS
        RimK  10 lLakakikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea...lkeailvqeyieeaenediRvlvvddevvaalrr 105
                  L   +i++ ++   +  ++a +  e++  + Pv+v+s ++  G++  +a++ +++kq+ +    l  +ilv + ++  + +++   vv d v   +  
  CCD24350.1 156 ALKEINIPIAESIACETIDQALDAAEQV--KYPVIVRSAYALGGLGSGFANNAEEMKQLASQslsLAPQILVEKSLK--GWKEVEYEVVRDRVGNCITV 250
                 4555567777777788889999999999..59***************************776777888888887554..44677777888887666655 PP

                 E--SSS---.-TTTT-E...EEE----HHHHHH....HHHHHHHCT-S.EEEEE..EEEETTEEEEEEEES CS
        RimK 106 vskeGdFRs.nlhrGgv...aeklqlseeekel....Aikaakamelv.vaGvD..llrakrgllvlEvns 165
                    e +F    +h G     a   +ls+ee ++    Aik+ + ++++  + v   l ++  ++ v+Evn+
  CCD24350.1 251 CNME-NFDPlGIHTGDSmvfAPSQTLSDEEYHMlrsaAIKIIRHLGVIgECNVQyaLQPNGLDYCVIEVNA 320
                 5444.675426777764222345567777644323336776666554324666653444555667777776 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0013
                 H-HHHHHHHHHHTT-----EEEESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH.....GGG--EEEEE--SS-SEEEEEEEE CS
        RimK   2 rdKlkslklLakakikvpntalardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea.....lkeailvqeyieeaenediRvlvv 95 
                 +d+ k   +L   +++ p      + e+a+ +  k+  +fPv+++ ++   G  + + ++e++lk+ l        ++ +++ ++ie a++ d+  +  
  CCD24350.1 689 EDRHKFSSILDSIEVGQPDWSELSSVEEANVFAAKV--GFPVLIRPSYVLSGAAMSVVNNEEELKNKLTLasdvsPDHPVVMSKFIEGAQEIDVDAVAY 785
                 566666777777777778777777888999999999..6***************9999999999987654346545566799*********99988887 PP

                 TTEEE CS
        RimK  96 ddevv 100
                 +++v 
  CCD24350.1 786 KGHVL 790
                 77774 PP

>> GARS_A  Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0017       3.1       8      96 ..     155     237 ..     149     289 .. 0.86
   2 !    7.8   0.0    0.0015       2.6       9      98 ..     697     782 ..     691     810 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0017
                 HHHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S.EEEEE CS
      GARS_A   8 dllkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvsl 96 
                 + lk+++ip+ae  a +  ++a +  e+++ ++ +v+++   +g g   a+++ee  + +++ l+         ++++E+ l+G +Ev  
  CCD24350.1 155 QALKEINIPIAESIACETIDQALDAAEQVKYPV-IVRSAYALGGLGSGFANNAEEMKQLASQSLS------LAPQILVEKSLKGwKEVEY 237
                 4589*****************************.77777777899**********9999999996......5689999999999446655 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0015
                 HHHHTT--B--EEEESSHHHHHHHHHHHSSSEEEEEESC-GGGT-EEEESSHHHHHHHHHHHCTS-TTCCCCSSEEEEE---S.EEEEEEE CS
      GARS_A   9 llkkagiptaeyeaftdpeeakeyieeatakalVvKadglaagKgvivakseeealkavkeilekkkfGeagekvviEelleG.eEvslla 98 
                 +l+ +++  +++++++++eea+ +  ++++++  ++++ + +g  ++v+++eee  + ++   +     +  + vv+ +++eG +E+ + a
  CCD24350.1 697 ILDSIEVGQPDWSELSSVEEANVFAAKVGFPV-LIRPSYVLSGAAMSVVNNEEELKNKLTLASD----VSPDHPVVMSKFIEGaQEIDVDA 782
                 78899999************************.9****************99997776653322....34578888888888834666555 PP

>> ATP-grasp_5  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   4.8e-05     0.086      17      52 ..     155     190 ..     142     194 .. 0.91
   2 ?    1.2   0.0      0.12   2.1e+02      12      51 ..     691     730 ..     686     733 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.8e-05
  ATP-grasp_5  17 elleaygipvvetrlassaeeaveaaeeigypvvlK 52 
                  + l+ ++ip++e++ +++ ++a++aae+++ypv ++
   CCD24350.1 155 QALKEINIPIAESIACETIDQALDAAEQVKYPVIVR 190
                  67999****************************987 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.12
  ATP-grasp_5  12 eaeakelleaygipvvetrlassaeeaveaaeeigypvvl 51 
                   ++  ++l+ +++  ++    ss+eea   a+++g+pv +
   CCD24350.1 691 RHKFSSILDSIEVGQPDWSELSSVEEANVFAAKVGFPVLI 730
                  567789999*****************************87 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   2.8e-05      0.05       5      94 ..     980    1069 ..     977    1070 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
                  HHHHHHHTTCEEEEEHHHH.HHHHHT.T--EEECCCCHSTGSGGTHCHHHHHHHHTTSCCEEEEE--THHHHHHCHHHHHHHHHHHTTSHEE CS
         MGS    5 lakklkelgfellATgGTa.kllkea.gipvtevvektgegerlggrveildaikngeidlvintlypfkatvakdgykirraaenidIplp 94  
                  +a  l+ l+++l+ T   a k++ ++ g  + ++v++++++ +++ + ++ ++ ++++i++v n+ +++++++ + +y +rr a+++ Ipl+
  CCD24350.1  980 VAAILAPLKYKLYVTNEAAqKYILQHiGETAGSIVKIIEFP-KND-KRKLRELFQKYDIKAVFNLASKRAENTDDVDYVMRRNAIDFAIPLF 1069
                  6677888899999998777344444437777899*******.666.467**********************99988999***********96 PP

>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.22      64      91 ..     196     223 ..     160     246 .. 0.87
   2 ?   -3.4   0.0         4   7.2e+03     135     165 ..     490     520 ..     482     524 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
                 CCCCHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  64 GeqGrGFaVVAdEVrkLAersaqaakei 91 
                 G+ G GFa  A+E ++LA++s   a +i
  CCD24350.1 196 GGLGSGFANNAEEMKQLASQSLSLAPQI 223
                 889******************9999887 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 135 eavaevadlvqeiaaaseeqsasieevnqav 165
                 e+v++++dl q+i + +++   s +++++++
  CCD24350.1 490 EQVEKLNDLTQDILQRAKKVGFSDKQIASSI 520
                 4555566666666666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 7269.71
//
Query:       CCD24351.1  [L=278]
Description: hypothetical protein NDAI_0D00370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-14   52.3   1.9    9.3e-14   51.5   1.9    1.4  1  Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centrom
  ------ inclusion threshold ------
       0.11   11.3   0.2       0.13   11.1   0.2    1.1  1  DUF2079       Predicted membrane protein (DUF2079)
          2    7.7   8.1        3.7    6.8   8.1    1.4  1  NOA36         NOA36 protein


Domain annotation for each model (and alignments):
>> Yippee-Mis18  Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   1.9   1.6e-17   9.3e-14       1      91 [.     181     275 ..     181     278 .] 0.82

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 1.6e-17
                   EEEEETTTS-EEEECCCEEE...EECCCEEEES---CCCEEEECEEEET.TSTTEEEEEEEETTT--EEEEEEEECSCC.CCCCCTCEEEEGGGEE CS
  Yippee-Mis18   1 lvfqCkkCktilgdslqlvs...egralnivvlkkvtrnvvvgkelvtd.eegkctystlsCkgCnsvlGwkYksteee.lkykrglfiletkait 91 
                   ++f C++C+t+l+ s++++s   +g+  + +++++v  nv+ g+  ++   +g++ +  + C+ C++ +GwkY + e + +k k+g++ile + i+
    CCD24351.1 181 MTFGCRHCRTHLSSSNEIMSkdyRGKTGDAYLMDHVV-NVIEGTMETRPmITGEYLVCDILCHWCKNLVGWKYIQSEMNdQKFKEGKYILELETIC 275
                   589*****************77756667778888776.555455444442456788888******************999************9997 PP

>> DUF2079  Predicted membrane protein (DUF2079)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   2.2e-05      0.13     353     412 ..      50     107 ..      24     150 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.2e-05
     DUF2079 353 vvylstlaqlqasrellklIpsdasvlatsnLaPhlanRayvylfpeneelydleyllee 412
                 + +++++++l+  + +++ + + +sv++ts ++Phl + +  ++ ++n ++++++   ++
  CCD24351.1  50 PSPIPPPRHLRYENGAFRIVRTPSSVVTTSLIYPHLNHESS-TRSYRNGRRNHRN-HQNR 107
                 5578889999999*************************777.5556666664444.2222 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.1   0.00062       3.7     228     292 ..      89     149 ..      82     162 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00062
       NOA36 228 lstrslkfgrqkqadgsdddddde.edsdydaylkalasgddeddegdedddddddeedddeeedd 292
                  strs++ gr+++ ++++ +   + +d+d+++ +++   ++ + +e+++d   ++   d+de+ ++
  CCD24351.1  89 SSTRSYRNGRRNHRNHQNRHTVFSpTDNDFNSIYNNQYDENGNGNENEND---EY--YDEDEDGEG 149
                 599*******9977665555433214445555444433322222222222...22..222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       677  (0.0377601); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2006.52
//
Query:       CCD24352.1  [L=739]
Description: hypothetical protein NDAI_0D00380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.2e-137  457.7   1.2   2.8e-137  457.4   1.2    1.1  1  Myotub-related  Myotubularin-like phosphatase domain
     0.0012   18.8   0.1     0.0039   17.1   0.1    2.0  1  GRAM            GRAM domain
  ------ inclusion threshold ------
      0.021   14.6   0.0      0.058   13.2   0.0    1.7  1  DSPc            Dual specificity phosphatase, catalytic domai
       0.12   12.3   0.0        0.2   11.6   0.0    1.3  1  Y_phosphatase3  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> Myotub-related  Myotubularin-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  457.4   1.2  6.2e-141  2.8e-137       1     350 [.     135     606 ..     135     608 .. 0.94

  Alignments for each domain:
  == domain 1  score: 457.4 bits;  conditional E-value: 6.2e-141
                     XXXXXXXXXXXXXXX-GGGSS-TTHHHHHTT-.............SSSSEEEE-TTTTSSS-TTS-SSEEEETT--HHHHHHHHTTBGGG---EE CS
  Myotub-related   1 lyafsykeeekeleengwkiydaekefkrlgvs........eekksssewrisevNedyklcetYpsllvvPksisdevlkkaakfrskgRiPvl 87 
                     lyaf y++++ el+ ngw++y++e+efkr+g++        +e+ ++  wr+s +N+dyk+++tYps+l+vP+s sd+ l++aak+rs++RiPvl
      CCD24352.1 135 LYAFLYTPNRAELQFNGWNLYSPEREFKRQGLQlignndehTEHGETFPWRLSLINSDYKFSSTYPSKLIVPTSTSDSLLTHAAKYRSQNRIPVL 229
                     79******999999*****************99999999887788999*********************************************** PP

                     EEE-TTT--EEEEE--BS-TT.T---HHHHHHHHHHHTTT..........TS..S-EEEEE-S-HHHHHHHHCTT-----CCCST.......... CS
  Myotub-related  88 sylhkengavitrssqplvglkqkrskeDeklleaifkssk.........ssaekkllivDarpkanavankakgggteneenYk.......... 163
                     +y++k+nga+i+rs+qpl g+ ++rs++Dekl+ ++f++++         s ++++++ivDarp++na+a+ a gggten++nY           
      CCD24352.1 230 TYFYKRNGASIVRSAQPLPGIINQRSIQDEKLVMECFNCCNklplnnniaSISTRQNVIVDARPMTNAIAQVALGGGTENMDNYAfpqlstpngk 324
                     ***************************************888*******97779*******************************8888888777 PP

                     .TEEEEE-----HHHHHHHHHHHHH.HH....................TSS--HHHHHHHHHH.........H-HHHHHHHHHHHHHHHHHHHHC CS
  Myotub-related 164 .naklvflgienihvmreslkklve.alkds.................ekeasekkwlsaLek.........skWlkhiksiLeaaaliaksvel 230
                      ++k++flgi+nihvm + +++l++ +l d                  +       + ++L++          +Wlk+ik +L+++ +++ksv  
      CCD24352.1 325 nHTKRMFLGIDNIHVMSDIMNSLIDnFLVDGdlnlpinkrqlngitnsN-------LKKNLKNnsantsskgKNWLKTIKILLSSTETLVKSVIF 412
                     77***********************655555899999988765555441.......44444445555555559********************** PP

                     S---EEEE-SSSSSHHHHHHHHHHHHH-GGGGSHHHHHHHHHHHTTTTT--HHHHTTSS-...T............................... CS
  Myotub-related 231 ekssvLvhcsdGwDrtsqlsslaqllLdpyyRTieGFqvLiekeWlsfGhkFaeRsghlaseka............................... 294
                     ++s+ L+hcsdGwDrt+q++sl++l++dpyyRT+eGF++L+ekeW+sfGhkF eR+ghl se++                               
      CCD24352.1 413 NGSNLLIHCSDGWDRTAQVCSLIELCIDPYYRTMEGFIILVEKEWVSFGHKFLERCGHLGSERIfhdnttfsttsttknipskiindqrgllggg 507
                     *************************************************************999******************************* PP

                     ...........................................TSTT---HHHHHHHHHHHHHHH-TTT-SB-HHHHHHHHHHHHH--SSTT-SS CS
  Myotub-related 295 ...........................................kskersPvFlqFldcvyqllrqfptaFeFnerfLirlldhlyscqfgtFlyn 346
                                                                + k  sP+F+qFldcvyqll q+pt+FeFnerfL+rl++hlyscq+gtFl++
      CCD24352.1 508 dshndydellimdkslqnninsnsvlinkmsnkfkinkkwknnDLKFISPIFQQFLDCVYQLLIQNPTSFEFNERFLRRLVYHLYSCQYGTFLFD 602
                     ****************************************9888888************************************************ PP

                     SHHH CS
  Myotub-related 347 seke 350
                     +e+ 
      CCD24352.1 603 NERT 606
                     *985 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   8.6e-07    0.0039      23      60 ..      13      48 ..       5     129 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.6e-07
                EEESS.SEEEEEEEEESSEEEEEE-STT---EEEEEGG CS
        GRAM 23 yllrdggpvqGrlyltnyrlcFrskplgsskkvvlpla 60
                 l++ g+pv G+l lt+++l+F+s+ l +++   + + 
  CCD24352.1 13 VLHKRGIPVIGTLHLTTHHLIFSSNALSTEF--WFAYP 48
                577888*******************987774..44333 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.3e-05     0.058      50      91 ..     391     432 ..     340     434 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
                 STTSCCGGGHHHHHHHHHHHHHTT-EEEEEESSSSSHHHHHH CS
        DSPc  50 ehetkiskyleeavefidkakqkgkkvlVHCqaGisRSatli 91 
                 ++ + i   l+++ + ++++  +g + l+HC  G  R+a ++
  CCD24352.1 391 NWLKTIKILLSSTETLVKSVIFNGSNLLIHCSDGWDRTAQVC 432
                 666777778889999999*********************998 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.6e-05       0.2     107     143 ..     400     437 ..     330     445 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.6e-05
  Y_phosphatase3 107 kkayrkvfealadee.pvlfHCtaGKDRTGvlaallls 143
                      ++ +++++ ++ ++  +l+HC+ G DRT  ++ l+  
      CCD24352.1 400 LSSTETLVKSVIFNGsNLLIHCSDGWDRTAQVCSLIEL 437
                     35666777777774579************999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 5028.15
//
Query:       CCD24353.1  [L=292]
Description: hypothetical protein NDAI_0D00390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-05   23.3   0.0    0.00015   21.7   0.0    1.8  1  CMD       Carboxymuconolactone decarboxylase family


Domain annotation for each model (and alignments):
>> CMD  Carboxymuconolactone decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   8.6e-09   0.00015      19      76 ..     221     278 ..     204     282 .. 0.86

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 8.6e-09
                 STS-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHSHHHH CS
         CMD  19 ggLdpkereLialavsaangceyCvdaHtraAleaGvteeeiaevlaqaaayagwpaa 76 
                 + L+++e++Li +a ++ ++    ++ H+++Al+ G++ e i ++ +     ++w+ +
  CCD24353.1 221 DVLNAQEKSLIVIASLVPQDVNPQLRGHLKGALNIGCDFETIEATRRLSILVSQWCGI 278
                 3499*******************99**********************99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2237.88
//
Query:       CCD24354.1  [L=280]
Description: hypothetical protein NDAI_0D00400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-34  118.4   0.7    2.9e-34  117.9   0.7    1.2  1  Ribosomal_S7   Ribosomal protein S7p/S5e
  ------ inclusion threshold ------
       0.12   12.6   1.9       0.42   10.9   0.2    2.3  2  TcdB_N         TcdB toxin N-terminal helical domain
       0.14   11.9   0.2       0.64    9.7   0.0    1.9  2  ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydro


Domain annotation for each model (and alignments):
>> Ribosomal_S7  Ribosomal protein S7p/S5e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.7   4.9e-38   2.9e-34      14     149 .]     138     274 ..     125     274 .. 0.94

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 4.9e-38
                   --SSTTSBHHHHHHHHHSBTTBHHHHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHCS-SEEEEEEBSS.SSBEEEEEEE-HHHHHHHHHHHHHHHHS CS
  Ribosomal_S7  14 pdpkynselveklinklmkdGkkslAekivygaldiieektkkdplevleeAlenvkPrvevksrrvG.GatyqvpvevrpkRrqalAlrwiieaar 109
                   p p   +++v++++n++m+dGk+++Ae+i+++al +++++ k dp++vl+e len++P + +k++++  +++  +pv +++++r+++A++wi+e+a+
    CCD24354.1 138 PIPLKFDPIVKHVTNMIMRDGKRAKAERIISKALYLVHRQLKVDPIQVLKENLENLSPLMITKTFKTKvAKAAMIPVTLNERQRHRIAWKWIVEGAN 234
                   66677799**********************************************************87588899*********************** PP

                   TSSSS-HHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTG CS
  Ribosomal_S7 110 krkeksmaekLaeElidAaegegaavkkreethrmAeanr 149
                   +r +k ++ +L eEl+++++g+++a++kr+++h++  a+r
    CCD24354.1 235 SRVSKDFSVRLGEELVAVYKGQSSAFDKRDQIHKTSIAHR 274
                   **********************************998876 PP

>> TcdB_N  TcdB toxin N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   7.1e-05      0.42       9      35 ..      63      89 ..      60      92 .. 0.93
   2 ?    0.4   0.1      0.14   8.1e+02      21      42 ..     115     134 ..     108     138 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.1e-05
                HHHHHHHTTTTS-HHHHHHHHHHHHHH CS
      TcdB_N  9 nleeklnklseeqskkkyellkklkke 35
                nl e l++l++e + + +e++++lkk+
  CCD24354.1 63 NLNESLQSLTDEEVDQWLESINELKKQ 89
                999**********************98 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.14
                 -HHHHHHHHHHHHHHHHHHHHH CS
      TcdB_N  21 qskkkyellkklkkeidnYnnl 42 
                 ++++   +++  k+++ +Y++l
  CCD24354.1 115 SLQD--QQFQPTKEQLEEYESL 134
                 4444..6777888888888877 PP

>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.13   7.6e+02     187     205 ..      66      84 ..      63      96 .. 0.74
   2 ?    9.7   0.0   0.00011      0.64     112     170 ..     202     257 ..     155     259 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.13
                    HCT----HHHHHHHHHHHH CS
  ELFV_dehydrog 187 larlswteeevdeklkkim 205
                     +  s t+eevd+ l++i+
     CCD24354.1  66 ESLQSLTDEEVDQWLESIN 84 
                    4566899********9884 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00011
                    SS-SEEEE-SSTTSB-HHHHTHTHHTT-SEEE-SSSS-B-HHHHHHHHHTT-EEE-HHH CS
  ELFV_dehydrog 112 lkvdilvPcAtqneideenakalikngvklvvEgANlpttqeAkeileeagvlvvpdka 170
                    +k+ ++  + ++  ++e++ + +i+   k++vEgAN  ++++   +l e+ v v+++ +
     CCD24354.1 202 FKTKVAKAAMIPVTLNERQRH-RIA--WKWIVEGANSRVSKDFSVRLGEELVAVYKGQS 257
                    566666667777788888888.899..9*******************999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2247.42
//
Query:       CCD24355.1  [L=320]
Description: hypothetical protein NDAI_0D00410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1282  (0.0715043); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2268.03
//
Query:       CCD24356.1  [L=155]
Description: hypothetical protein NDAI_0D00420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-47  159.8   4.5    5.1e-47  159.6   4.5    1.0  1  Sod_Cu    Copper/zinc superoxide dismutase (SODC)


Domain annotation for each model (and alignments):
>> Sod_Cu  Copper/zinc superoxide dismutase (SODC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.6   4.5   2.8e-51   5.1e-47       6     142 .]      12     150 ..       8     150 .. 0.96

  Alignments for each domain:
  == domain 1  score: 159.6 bits;  conditional E-value: 2.8e-51
                 EEEEEEEEEEECSTTSTCEEEEEEEECSS-STEEEEEEEESSTTTTTTTGGG-SB-STT-.CSSTTTTTCS-TTEEEEEEESTTSEEEEEEEEESC.BC CS
      Sod_Cu   6 gevsGtvtftqeeskesgsvevtvevkglppggkhgfHiHengdcsagfksagghfnptgkkhgapndeerhaGDLgnievdadgtakleittdklvsl 104
                 + vsG+v+f+q+++  s+ + v++e++g +p  + gfH+He+gd+s+g+ sag+hfnp+g++hgap+d+ rh+GD+gn+++d++g+ak ++  d++++l
  CCD24356.1  12 AGVSGVVHFEQKSE--SDPTLVSWEITGNSPDAMRGFHVHEFGDVSNGCVSAGPHFNPFGQTHGAPTDKVRHVGDMGNVKTDSQGVAKGSLS-DHMIKL 107
                 5699*******884..45699*********************************************************************98.****** PP

                 STTTBCTTEEEEEESS---TT.....SCHHHTTSSSEEEEEEE CS
      Sod_Cu 105 kgensilgralvihagaDdlg.....eskptgnagariacGvI 142
                  g+nsi+gra+vihag+Ddlg     es++tgnag+r acGvI
  CCD24356.1 108 IGPNSIIGRAVVIHAGQDDLGkggneESLKTGNAGGRNACGVI 150
                 ******************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       250  (0.0139439); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1243.89
//
Query:       CCD24357.1  [L=200]
Description: hypothetical protein NDAI_0D00430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-41  142.3   5.8    1.5e-41  141.9   5.8    1.1  1  ESCRT-II  ESCRT-II complex subunit


Domain annotation for each model (and alignments):
>> ESCRT-II  ESCRT-II complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.9   5.8   8.4e-46   1.5e-41       2     140 .]      27     167 ..      26     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 141.9 bits;  conditional E-value: 8.4e-46
    ESCRT-II   2 ysFpPfFTlqpnlttrkkqlekWsslilaycrhhrifklslseaeeeeeeselFknkkinRrlsledirevleelvkkgraewvdkek...skalvywr 97 
                 ysFpP++T+qpn  +rk+q+++W ++il++++ h+ + +s +++  + ++ ++F+n++i+R++++ +i+e++++++++++a  v++++   ++++++w+
  CCD24357.1  27 YSFPPLYTRQPNVMIRKQQINAWIDIILQFAQLHKYWIISQDGTPVS-SNLSIFNNESIQRSVPQVFIDEIWSQMIQEKKALPVQEHHkniNQYFILWK 124
                 ******************************************87655.889******************************99944444449999**** PP

    ESCRT-II  98 tpeewasliyewveetgqkgsvlTlyeLtegdetrgeefhgld 140
                  +++was+i++w+e+ ++ ++v+T+yeL+++det + efh+++
  CCD24357.1 125 DIQSWASIILQWFEDFNKLNQVVTIYELSQSDETMEYEFHQMP 167
                 *****************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1444.71
//
Query:       CCD24358.1  [L=267]
Description: hypothetical protein NDAI_0D00440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-14   53.1   2.1    7.9e-09   35.6   0.6    2.5  2  Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal do


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.2e-07    0.0075       2      61 ..     114     176 ..     113     194 .. 0.77
   2 !   35.6   0.6   4.4e-13   7.9e-09      48     102 .]     210     264 ..     198     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 4.2e-07
                 -HHHHHHHHHHHS..SHHHHHHHHHHHHH.HSSSSEEEEEEEETTTEEEEEEEETTTBGGGGT CS
    Sod_Fe_C   2 sgelaeaieedfg..slekfkkefkaaal.avfgsGwawLvldkkkkLeivttknqdnplvke 61 
                 s+ + ++++e f+    e++k+ + ++a+ +  g+Gw +Lv + +k+L+++  +n+ +p+  +
  CCD24358.1 114 SKMFLNRVKEYFDgkTWEELKELMIQEAMtRCLGQGWLFLVERANKRLDLMVLQNNGTPYYFG 176
                 556667777777522578999988776661578***********************9998754 PP

  == domain 2  score: 35.6 bits;  conditional E-value: 4.4e-13
                 EEEEETTTBGGGGTTCEEEEEE-SGGGTHHHH.TT-HHHHHHHHGGGBBHHHHHHH CS
    Sod_Fe_C  48 ivttknqdnplvkeakplLalDvwehAYyldy.qnkradYieafwnvvnWkeveer 102
                 +v+ +++dn+  + ++p++++++w+hAY  dy    ++dYi+++++ +nW  +++r
  CCD24358.1 210 VVEGQEHDNNKDW-TVPIICVNLWDHAYLNDYgFLGKKDYIKNVLDNLNWAVINNR 264
                 5556666664443.56****************5579***************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2012.31
//
Query:       CCD24359.1  [L=334]
Description: hypothetical protein NDAI_0D00450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-68  230.9   0.1    1.4e-68  230.5   0.1    1.1  1  Scramblase  Scramblase
  ------ inclusion threshold ------
       0.05   13.4   0.1      0.092   12.5   0.1    1.3  1  CdiI        CDI immunity protein


Domain annotation for each model (and alignments):
>> Scramblase  Scramblase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.5   0.1   1.5e-72   1.4e-68      11     221 .]      69     315 ..      59     315 .. 0.91

  Alignments for each domain:
  == domain 1  score: 230.5 bits;  conditional E-value: 1.5e-72
  Scramblase  11 dpaaleiLleldsllveqqiellevllgfEtaNrYvvkdvagqkvavaaer....snalaRqllgthRpfvvkilDnlgnevltlkRpfkcis...c.. 100
                  ++++++L+e +++l+e+qie+++v+lg+E++N+Y+++dv+g+++++++e+     +++ Rq+++ hRpf+v+++Dn++n ++ +kRpf++i+   +  
  CCD24359.1  69 WNSQTSFLNE-PTILIERQIEMMNVFLGYEQSNKYIIMDVMGNRLGYMIEKdlslWKSILRQFYKLHRPFTVDVFDNWNNLIMSIKRPFSWINshiKty 166
                 4556667777.****************************************999989************************************654278 PP

  Scramblase 101 ..........lasvlqeaei....eapegttiGevlqkwhlwrrkyellnakreqvlsiegplvkid.cvldteFevktadgevvgsisrkwsGllrEl 184
                           +   ++++ +    +  +g  iGe++q+whlwrr+yel++ +++   +  +++ +id ++l++eF+v +  g++++si+r+w+Gl+rE+
  CCD24359.1 167 vpreyehipsS---SETSGShsvlDEHDGILIGETIQNWHLWRRRYELFQRSSKGQNEGMDQFGEIDaPFLSFEFPVLDSRGKIMASIDRNWVGLGREM 262
                 88898885542...33332233469***************************999999***************************************** PP

  Scramblase 185 ftDadtyvvrFpl................dLdlklkavllgaafliDfdyFer 221
                 ftD++ y +rF++                 L+l+++a+ll++a++iDfdyF+r
  CCD24359.1 263 FTDTGVYNLRFDSrqsfngiypqesmsnqVLNLNQRAILLANAVSIDFDYFSR 315
                 ***************************************************97 PP

>> CdiI  CDI immunity protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1     1e-05     0.092       8      60 ..      77     128 ..      72     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1e-05
                 -SS-EEEEEEEESSSEEE-TTS--EEE-TT--HHHHHHHHHHHHHT--B-SHH CS
        CdiI   8 ngkfisissylesrlllldpkqslklLspdvsdselGkairkaLsksreiepe 60 
                 n+  i i++ +e +  +l ++qs+k++ +dv+ ++lG  i k Ls  + i ++
  CCD24359.1  77 NEPTILIERQIEMMNVFLGYEQSNKYIIMDVMGNRLGYMIEKDLSLWKSI-LR 128
                 778899***************************************98888.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2526.45
//
Query:       CCD24360.1  [L=278]
Description: hypothetical protein NDAI_0D00460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2188.85
//
Query:       CCD24361.1  [L=351]
Description: hypothetical protein NDAI_0D00470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2577.45
//
Query:       CCD24362.1  [L=254]
Description: hypothetical protein NDAI_0D00480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.2e-48  162.8   0.1    1.1e-47  162.6   0.1    1.0  1  Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 


Domain annotation for each model (and alignments):
>> Peptidase_C12  Ubiquitin carboxyl-terminal hydrolase, family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.1   5.9e-52   1.1e-47       2     198 ..      13     214 ..      12     233 .. 0.83

  Alignments for each domain:
  == domain 1  score: 162.6 bits;  conditional E-value: 5.9e-52
                    --EE--HHHHHHHHHHHT--S...EEEE--S.SH.HHTTS-..--EEEEEEE.----------.---------..T...TS------STTGHHHHH CS
  Peptidase_C12   2 lplEsdPevftelleklGvkg.vqfeevysldde.llaslp..vyglillfkyieeeeeeeerekeeeekdeeeeevsekvfFakQtiqnaCgtiA 93 
                    +plEs+Pevft+++++lG++  ++f+++ysl+d  lla+lp  v+++illf+ i++++e++++   ++++++  + +s++ +++kQti+naCg++A
     CCD24362.1  13 IPLESNPEVFTDFAKNLGLDPlFAFHDIYSLTDAdLLAFLPrpVKAIILLFP-ISDKQEKQDD-VIKNDTQSVMSLSSKDAVWFKQTIKNACGLYA 106
                    79*****************************7777*****556*********.7777444444.44334333345667899*************** PP

                    HHHHHHH..STS--.-TTSHHHHHHHHHTTS-HHHHHHHHH.T-HHHHHHHTTSC.....---SSTHHHHS--EEEEEEEEE.TTEEEEE-TTS.. CS
  Peptidase_C12  94 lLhvllNlekeaeeielgseLkkfkeftkelspeergeale.nseeireahnsfa...segqteapeeeedvafHFiafvpv.ngklyeLDGlk.e 183
                    +Lh+l+N  ++ + ++ +s+L +f+++  e ++e++g+  e ++++i ++ n+f    ++g+t+ap++++dv++HFi+fv   +++++eLDG++ +
     CCD24362.1 107 ILHSLAN--NK-SMLTSDSILGQFINDNYETKNENNGNKNElTDDFIFDICNKFLkifEAGETKAPDAHSDVDLHFITFVSNdKNQIFELDGRNpK 199
                    *******..44.5669*********************999834567999***99988888999***999************9679********978 PP

                    S-EEEEE--T..TTH CS
  Peptidase_C12 184 gPidlgeveeeeedl 198
                    gP  lg++++++++ 
     CCD24362.1 200 GPSYLGDITASKNNA 214
                    9*******5444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       600  (0.0334653); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1999.54
//
Query:       CCD24363.1  [L=773]
Description: hypothetical protein NDAI_0D00490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-06   25.6   0.0    1.2e-05   24.7   0.0    1.4  1  LCAT            Lecithin:cholesterol acyltransferase
    1.6e-05   24.8   0.0    6.9e-05   22.7   0.0    2.0  2  PGAP1           PGAP1-like protein
    3.4e-05   23.2   0.0     0.0001   21.6   0.0    1.8  2  Hydrolase_4     Serine aminopeptidase, S33
    8.6e-05   23.2   0.0    0.00016   22.4   0.0    1.4  1  Abhydrolase_6   Alpha/beta hydrolase family
    0.00022   20.9   0.0    0.00053   19.7   0.0    1.6  1  Abhydrolase_1   alpha/beta hydrolase fold
     0.0023   17.8   0.3     0.0055   16.6   0.0    1.7  2  Ser_hydrolase   Serine hydrolase
     0.0057   16.2   0.0      0.014   14.9   0.0    1.6  1  DUF900          Alpha/beta hydrolase of unknown function (DUF
  ------ inclusion threshold ------
      0.018   14.8   0.0      0.053   13.3   0.0    1.8  1  Abhydrolase_5   Alpha/beta hydrolase family
       0.09   12.6   0.0       0.18   11.6   0.0    1.5  1  Palm_thioest    Palmitoyl protein thioesterase
      0.091   12.1  11.0       0.14   11.4  11.0    1.2  1  BUD22           BUD22
       0.56   10.3   9.9        1.2    9.3   9.9    1.4  1  DUF2052         Coiled-coil domain containing protein (DUF205
       0.75    8.1   3.9        1.2    7.5   3.9    1.2  1  Mem_trans       Membrane transport protein
        2.6    7.4   7.4        4.4    6.6   7.4    1.4  1  Plasmodium_Vir  Plasmodium vivax Vir protein


Domain annotation for each model (and alignments):
>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   8.5e-09   1.2e-05      90     162 ..     441     508 ..     423     611 .. 0.79

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 8.5e-09
        LCAT  90 apYDWRlsleerd.kYfskLkelieealklsgkkvvliaHSmGnllvlyflkwveaeaWvdqhikafislgapl 162
                   YDWR+sl+  + k   kL+el ++  + ++k   liaHSmG+l+    l+    +    + + ++i+++ap 
  CCD24363.1 441 FGYDWRVSLDISAiKLKDKLQELYDKQPEGNKKGTYLIAHSMGGLVAHKVLQD---YT---HLVRGIIYVAAPS 508
                 57******77555266678888888888888999**************99988...44...6789999999985 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.4   3.3e+03     168     200 ..     358     390 ..     356     392 .. 0.89
   2 !   22.7   0.0     5e-08   6.9e-05      78     134 ..     459     513 ..     453     522 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.4
       PGAP1 168 sitggirdsmvpaeyssleelvpstnglsvatt 200
                  i gg+r+s++++  +  +  vp + g++++t+
  CCD24363.1 358 VILGGYRGSILRDAHTGKRIWVPIKAGFNMITN 390
                 589*************99999999999999886 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 5e-08
       PGAP1  78 yIlslysssek.eptsviliGHSmGGivaraaltlknyikqsvntiltlasPhalppl 134
                 ++++ly+++++ +++   li+HSmGG+va  +l   +   + v+ i+ +a+P + p +
  CCD24363.1 459 KLQELYDKQPEgNKKGTYLIAHSMGGLVAHKVLQDYT---HLVRGIIYVAAPSQCPNI 513
                 567899666551566799***********77665555...479*********998865 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.2   4.4e+03     199     238 ..     112     153 ..     111     154 .. 0.77
   2 !   21.6   0.0   7.5e-08    0.0001      74     112 ..     471     509 ..     455     541 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.2
  Hydrolase_4 199 GeaDkvvdpeasrelyerlgsk..dktlklypglyHellnEp 238
                  ++aD++v  +a+  + + l+ +  + + ++ + + H   +E+
   CCD24363.1 112 SAADTIVAASAASSATDDLSPSssNRSQHTWHSFIHRPSREQ 153
                  578999999999888888875545888888888888888776 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 7.5e-08
  Hydrolase_4  74 pelplfllGhSmGGliallyllrypdkvaglilsaPalk 112
                  +++  +l++hSmGGl+a ++l++y + v+g+i +a+  +
   CCD24363.1 471 NKKGTYLIAHSMGGLVAHKVLQDYTHLVRGIIYVAAPSQ 509
                  334689**************************9997655 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.1e-07   0.00016      37     104 ..     443     519 ..     420     571 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1.1e-07
                    STS-GGCS--HHHCHHHHHHHCCTT..........TTSEEEEEETCHHHHHHH.HHHCC...EE.EEES-......----TTT CS
  Abhydrolase_6  37 hGrsdpppldledladlaalldelaa........gggpvvlvGHSlGGalala.aapla.lvvg.vlldppp....talpagl 104
                    +  +++  ld ++      l d+l +        + +  +l++HS+GG++a   +++++ lv+g +++++p+      +p+++
     CCD24363.1 443 Y--DWRVSLDISA----IKLKDKLQElydkqpegNKKGTYLIAHSMGGLVAHKvLQDYThLVRGiIYVAAPSqcpnILGPLRF 519
                    3..3444444444....2233333334445554777777**************555555988889999997766553333333 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.8e-07   0.00053      71     108 ..     470     508 ..     452     539 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.8e-07
                    TTSSEE.EEEETHHHHHHHHHHHHHGGGEEEEEEESECS CS
  Abhydrolase_1  71 gddklt.lvGhSmGGmialayaaeyperVkalvllgaid 108
                    g++k t l++hSmGG++a  ++++y + V++++ ++a++
     CCD24363.1 470 GNKKGTyLIAHSMGGLVAHKVLQDYTHLVRGIIYVAAPS 508
                    6777777*****************************933 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.4       7.6   1.1e+04       8      34 ..     135     161 ..     131     176 .. 0.72
   2 !   16.6   0.0     4e-06    0.0055      52      92 ..     470     509 ..     445     530 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 7.6
                    T--TTTTCHHHHHHHHCCTEEEEEC-- CS
  Ser_hydrolase   8 qgsgpeHWqsrwekklpaarrveqadw 34 
                     +++++ W+s +++   +++r +++++
     CCD24363.1 135 SNRSQHTWHSFIHRPSREQERKRKQSI 161
                    577778899988887777766665554 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 4e-06
                    C-STTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SG CS
  Ser_hydrolase  52 aaeekvvlvAHSlgclavlhaaelqlakkvagalLVapadv 92 
                      ++ ++l+AHS+g l++ +++ +   + v+g++ Va ++ 
     CCD24363.1 470 GNKKGTYLIAHSMGGLVAHKVL-QDYTHLVRGIIYVAAPSQ 509
                    344559**********999999.99************9975 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-05     0.014      66     114 ..     441     493 ..     435     498 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-05
      DUF900  66 ynyD.resaeasrdalekllrylatkks...akkihllaHSmGtwlvlealrq 114
                 + yD r s   s+ +l++ l++l  k++   +k  +l+aHSmG  ++ ++l+ 
  CCD24363.1 441 FGYDwRVSLDISAIKLKDKLQELYDKQPegnKKGTYLIAHSMGGLVAHKVLQD 493
                 55663559999************999652225779*************99985 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.8e-05     0.053      39      89 ..     453     506 ..     442     513 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.8e-05
  Abhydrolase_5  39 avlgknkaeeiikeapklek..fvvgGhslGGvvasrfaaeee.kiegvvflas 89 
                    a+  k+k +e+ +++p+ +k   ++  hs+GG va ++ ++    + g++++a+
     CCD24363.1 453 AIKLKDKLQELYDKQPEGNKkgTYLIAHSMGGLVAHKVLQDYThLVRGIIYVAA 506
                    455678889999988876543357778*************98549******997 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013      0.18      48     104 ..     453     509 ..     411     583 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
  Palm_thioest  48 fgnlndqveavckk..lelangfhaiGfSQGglflRaliercddkknvrnlislggpqa 104
                     +l+d++++  +k  + +++g  +i++S Ggl++  +++ +  +  vr +i +++p +
    CCD24363.1 453 AIKLKDKLQELYDKqpEGNKKGTYLIAHSMGGLVAHKVLQDY-THL-VRGIIYVAAPSQ 509
                   456778888877777867799*********************.455.9****9999987 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  11.0    0.0001      0.14     169     284 ..     125     240 ..      78     249 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
       BUD22 169 sdkeeesedsed..eekeeseddeeeeeededdedaee.....deedeeaeerelaqydgllasddededeyneetdeesseesdssdssesasesese 260
                 s  ++ s +s++  +  + s   + ++e+++      +     +ee++  +   +a+ +++l+ ++e+e+e++ e de+ss  s+ss++ + ++  ++ 
  CCD24363.1 125 SATDDLSPSSSNrsQHTWHSFIHRPSREQER------KrkqsiNEEEDRINAVTAAEQEAVLETEEEEEEEEEGEGDETSSIISSSSSRASVQKLTTTT 217
                 2222222222222211122222222222222......12223333333344444555555777666666655566666666666666666555555554 PP

       BUD22 261 ssekkkkkkkkkkkkakakkvtss 284
                 s  + +++k kk kk+++ k++++
  CCD24363.1 218 SMVT-TRTKIKKPKKKTTIKPNTT 240
                 4444.4455455445555555433 PP

>> DUF2052  Coiled-coil domain containing protein (DUF2052)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   9.9   0.00085       1.2      48     138 ..     133     232 ..     114     244 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00085
     DUF2052  48 dksdskeeslseiLlr..reeeaaaaerleaqqeel.......eeeeeeeeeeeeeeeeeeeeeeedekekaea.........deedeeeeeek.eeke 127
                 ++s+++++++ +++ r  re+e+++++ +++++ +        +       e + e+eeeeeeeee e +++++         +   ++ ++ +  + +
  CCD24363.1 133 SSSNRSQHTWHSFIHRpsREQERKRKQSINEEEDRInavtaaeQ-------EAVLETEEEEEEEEEGEGDETSSiisssssraS--VQKLTT-TtSMVT 221
                 34455889999999982244555555555555555577766541.......222222222222222222222222322332221..111111.122222 PP

     DUF2052 128 eeeekeeeaea 138
                 ++ ++++ +++
  CCD24363.1 222 TRTKIKKPKKK 232
                 22222332233 PP

>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.9   0.00086       1.2     156     256 ..     151     246 ..     140     253 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00086
   Mem_trans 156 seefpdtaasivsikvdsdvvsldgrk.pleteaeikedgklhvtvrksnasrsdivssstprpsnltnaeiyslqmtrlilimvlrklirnPntyssl 253
                 +e++ +  +si+++++  + v+  +++  lete+e +e+++        +++ s+i+sss++r+s +      s+  tr   ++  +k  ++Pnt   +
  CCD24363.1 151 REQERKRKQSINEEEDRINAVTAAEQEaVLETEEEEEEEEE------GEGDETSSIISSSSSRASVQKLTTTTSMVTTRTKIKKPKKKTTIKPNTTHTI 243
                 34555667777777777777777777777777777666554......3456666667777777777778888888899999999999999999998877 PP

   Mem_trans 254 lgl 256
                 +++
  CCD24363.1 244 FSF 246
                 765 PP

>> Plasmodium_Vir  Plasmodium vivax Vir protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.4    0.0032       4.4     219     322 ..     150     251 ..      87     293 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0032
  Plasmodium_Vir 219 kqekaaeapellnkekaeqgksekslgseslssekpearkgveeqlvhaltsassgtgndaspesiansssslesvseelssnfirniimaaail 313
                     + e++ + ++++n+e+ + +  +  ++++ l++e++e++  +ee+++ +++s  s  +++as ++  +++s+ ++++++++++  ++i   ++ +
      CCD24363.1 150 SREQERKRKQSINEEEDRINAVTAAEQEAVLETEEEEEE--EEEGEGDETSSIISSSSSRASVQKLTTTTSMVTTRTKIKKPKKKTTIKPNTTHT 242
                     478888999999999999999999999888887666554..455555555555555679*************************99999888877 PP

  Plasmodium_Vir 314 gtgiflfsy 322
                     +  ++l++ 
      CCD24363.1 243 IFSFSLPFG 251
                     777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1589  (0.0886274); expected 358.6 (0.02)
Passed bias filter:                      659  (0.0367561); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.41
# Mc/sec: 5659.54
//
Query:       CCD24364.1  [L=190]
Description: hypothetical protein NDAI_0D00500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-17   63.3   0.3    2.6e-17   62.3   0.3    1.5  1  zf-CSL           CSL zinc finger
    2.3e-17   62.9   1.6    5.7e-17   61.6   1.6    1.7  1  DnaJ             DnaJ domain
  ------ inclusion threshold ------
      0.023   14.6   0.1        7.9    6.5   0.0    2.5  2  RPT              A repeated domain in UCH-protein
      0.075   13.5   0.1          1    9.9   0.0    2.2  2  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D
      0.098   12.1   0.1       0.21   11.1   0.1    1.5  1  Mu-like_Com      Mu-like prophage protein Com


Domain annotation for each model (and alignments):
>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.3   7.1e-21   2.6e-17       1      59 []     100     175 ..     100     175 .. 0.97

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 7.1e-21
                 EEEEGGGSEEETTTTEEEEEE.TTSSE..EEEEHHHHHTT..................--EEEETTSSEEEEEE-- CS
      zf-CSL   1 develedfefdeeeesyyypC.RCgde..Felteedleegae..............gaevvvqCssCSLwikVkfa 59 
                 de++l+df+fde++  y ++C RC+    F++ e+ l e a+               ++v++qC+sCSLw+kV+fa
  CCD24364.1 100 DEFSLDDFTFDETTCNYNMNCpRCKTLngFQFNEDSLDEFANtnintntntnggssAFQVLAQCNSCSLWLKVNFA 175
                 79*************************************9889*******************************95 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   1.6   1.6e-20   5.7e-17       1      63 []       9      80 ..       9      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 1.6e-20
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTS.........CCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDkn.........pkdpeaeekFkeineAyevLsdpekRkqYD 63
                ++Ye+L++++da+ +eIkkaY+++ l++HPDk+         + +   +   ++i++Ay++Ls+++ R+qYD
  CCD24364.1  9 THYEVLNINSDATLQEIKKAYKQKLLNIHPDKSstqilpisiTTNDLTSVSINQIQQAYKILSNESTREQYD 80
                59*****************************99666666555555555569********************9 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0044        16       6      33 ..      11      39 ..      11      46 .. 0.83
   2 ?    6.5   0.0    0.0022       7.9       2      25 ..      63      88 ..      62      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0044
         RPT  6 yklLgidentdDdviitayqvkl.eddps 33
                y++L+i+++++  +i +ay+ kl + +p+
  CCD24364.1 11 YEVLNINSDATLQEIKKAYKQKLlNIHPD 39
                99********************9655554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0022
         RPT  2 veeAyklLg..identdDdviitayq 25
                +++Ayk+L    +++  D+++++ ++
  CCD24364.1 63 IQQAYKILSneSTREQYDEELLETFK 88
                79*******44477777899999987 PP

>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.14     5e+02      29      42 ..      18      31 ..      15      43 .. 0.86
   2 ?    9.9   0.0   0.00029         1      27      57 ..      54      83 ..      48     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.14
                     -HHHHHHHHHHHHH CS
  Acetyltransf_11 29 seeeikalkkayrl 42
                     s+++++++kkay+ 
       CCD24364.1 18 SDATLQEIKKAYKQ 31
                     578899******85 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00029
                     T--HHHHHHHHHHHHHHHSSSS-HHHHHHHH CS
  Acetyltransf_11 27 gfseeeikalkkayrllyrsglsleealeel 57
                      +++  i+++++ay++l +++ + e+  eel
       CCD24364.1 54 DLTSVSINQIQQAYKILSNES-TREQYDEEL 83
                     678889***********9877.566655555 PP

>> Mu-like_Com  Mu-like prophage protein Com
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   5.7e-05      0.21      24      36 ..     117     129 ..     108     138 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.7e-05
  Mu-like_Com  24 tiKCPRCGtLnHl 36 
                  ++ CPRC tLn  
   CCD24364.1 117 NMNCPRCKTLNGF 129
                  478********65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1280  (0.0713927); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1590.81
//
Query:       CCD24365.1  [L=348]
Description: hypothetical protein NDAI_0D00510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-71  235.9   3.7    3.4e-23   81.4   0.0    3.3  3  Mito_carr  Mitochondrial carrier protein
    0.00067   19.4   2.8     0.0015   18.3   2.7    1.6  1  Ysc84      Las17-binding protein actin regulator


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0   1.5e-26   1.4e-22       3      96 ..      10     102 ..       8     103 .. 0.93
   2 !   74.5   0.8   5.2e-25   4.7e-21       2      96 ..     106     229 ..     105     230 .. 0.87
   3 !   81.4   0.0   3.8e-27   3.4e-23       3      95 ..     235     329 ..     233     331 .. 0.93

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 1.5e-26
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                  +++ +l+aGg+ag++++l+++Pld++K+r+q++++s++ +  ++++++   iy +eG+++ly+Gl++ +++++p+ a++f++ye+++  l++k
  CCD24365.1  10 SGPIINLVAGGTAGLFEALCCHPLDTIKVRMQIARRSANIKP-HGFIKTGNLIYSQEGFLALYKGLGAVVMGIIPKMAIRFSSYEYYRSALTNK 102
                 567889*******************************98755.56*******************************************999876 PP

  == domain 2  score: 74.5 bits;  conditional E-value: 5.2e-25
                 HHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH............................CCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHH CS
   Mito_carr   2 elsvlkellaGglagav.atlvttPldvvKtrlqt............................qkksskksksaaildvlkkiykeeGlrglyrGllpn 71 
                 ++s+ ++++aG+ ag++ a+lv++P++vvK+rlq+                            ++  +++ k++++++++++i+keeG+++lyrG++ +
  CCD24365.1 106 TISTGNTFIAGVGAGITeAVLVVNPMEVVKIRLQSqhipvtapavtatsavlssggtaaatgtAAAVGSAPKYTNAIHAVYTIVKEEGVSALYRGVSLT 204
                 678899***********88999*************9999999999999888887777766555444444444455************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr  72 llrvapasalkfvlyetlkrlllkk 96 
                   r+a +++++f++y +lk++l+k+
  CCD24365.1 205 AARQATNQGANFTVYSQLKDYLQKY 229
                 **********************997 PP

  == domain 3  score: 81.4 bits;  conditional E-value: 3.8e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllk 95 
                 l+ +++ l+G+++ga++ +  +Pld++Ktrlq + + s+k++sa   i  +  +++keeG+r+ly+G++p+++rvap +a++f++ye++++ + k
  CCD24365.1 235 LPSWETSLVGLISGAIGPFSNAPLDTIKTRLQKDHSLSSKNHSAWkkITIIGTQLIKEEGFRALYKGITPRVMRVAPGQAVTFTVYEFVRKQMEK 329
                 678999*******************************9999987788888999************************************998877 PP

>> Ysc84  Las17-binding protein actin regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   2.7   1.7e-07    0.0015       8      99 ..     116     221 ..     109     245 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.7e-07
       Ysc84   8 qiGvdiydcvlvlntkealeaftkktrvslGgdlsvaa.Gpvgaggeaeaaaaak...........lkapvysysksrG...lyaGvsldgtviterkd 91 
                  +G+ i++ vlv+n  e ++   +++++ + + +  a  + +  gg+a+a+ + +           + ++vy+++k +G   ly Gvsl  +  ++++ 
  CCD24365.1 116 GVGAGITEAVLVVNPMEVVKIRLQSQHIPVTAPAVTATsAVLSSGGTAAATGT-AaavgsapkytnAIHAVYTIVKEEGvsaLYRGVSLTAARQATNQG 213
                 58999***************988888888866553333133334444433322.24677778888889999*******9555699************** PP

       Ysc84  92 aNaafYge 99 
                 aN  +Y +
  CCD24365.1 214 ANFTVYSQ 221
                 ******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2628.77
//
Query:       CCD24366.1  [L=316]
Description: hypothetical protein NDAI_0D00520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1136  (0.063361); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2457.50
//
Query:       CCD24367.1  [L=371]
Description: hypothetical protein NDAI_0D00530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-20   71.0   0.3    7.7e-20   70.1   0.3    1.5  1  Fip1      Fip1 motif


Domain annotation for each model (and alignments):
>> Fip1  Fip1 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.3   4.3e-24   7.7e-20       2      43 .]     197     238 ..     196     238 .. 0.96

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 4.3e-24
        Fip1   2 idldqleekpWrkpGaDisDYFNYGfdEetWkeYcekqeklr 43 
                 id + l ekpWr+pGa++sDYFNYGf+E+tW eY+++ eklr
  CCD24367.1 197 IDPEVLREKPWRQPGANLSDYFNYGFNEFTWLEYLKRHEKLR 238
                 788999*********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1164  (0.0649228); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2737.06
//
Query:       CCD24368.1  [L=1334]
Description: hypothetical protein NDAI_0D00540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-08   33.1   0.5    3.7e-07   30.6   0.0    2.8  2  PH        PH domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.54   9.7e+03      43      88 ..     415     462 ..     392     467 .. 0.53
   2 !   30.6   0.0   2.1e-11   3.7e-07       2     104 ..    1203    1310 ..    1202    1311 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.54
                 SEEEEEESTTEEEEEEEC...TTSSSSTSEEEEEESTSSSTEEEEEEES CS
          PH  43 epkgsislsncevvevva...tedpkrkfcfelriverngsrtyllqas 88 
                 ++++ +slsn  ++  v+   ++   ++ ++e++i+e+n+ +  +lq s
  CCD24368.1 415 TKRTNLSLSNDIDKLAVNseiDNPDINEPKIEVKIAENNQ-SLRYLQKS 462
                 3333333333333333335546677777778888887776.66666655 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 2.1e-11
                  EEEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC...........TTSSSSTSEEEEEESTSSSTEEEEEEE CS
          PH    2 vkeGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevva...........tedpkrkfcfelriverngsrtyllqa 87  
                   keG+Ll+ g++  +++++r+f L++ e++ y +       epk  i+l ++ +v   +           t++     cf+l+++  +g + +++ +
  CCD24368.1 1203 NKEGYLLQEGGDVTGIFQRRYFKLNGIEMIGYHEI----TQEPKVNINLLKVIDVINIDdtvteankrifTDSVLMGECFQLVFD--DG-EIITFNV 1292
                  69***********99********************....7777777777777777766677767799999999999999******..99.******* PP

                  S.SHHHHHHHHHHHHHHH CS
          PH   88 s.seeerkeWikaiqsai 104 
                  + +  erk+W++ i++++
  CCD24368.1 1293 EaNYKERKDWYRKIKKVV 1310
                  ***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1383  (0.0771376); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.45
# Mc/sec: 8934.09
//
Query:       CCD24369.1  [L=1233]
Description: hypothetical protein NDAI_0D00550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-28   97.0   1.8    1.1e-05   24.8   0.0    6.7  6  PUF          Pumilio-family RNA binding repeat
    5.6e-07   29.3   0.0    1.3e-06   28.1   0.0    1.6  1  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   6.2e-08   0.00056       1      29 [.     747     774 ..     747     780 .. 0.83
   2 !   16.1   0.0   7.2e-07    0.0065       4      33 ..     786     816 ..     785     818 .. 0.87
   3 !   24.8   0.0   1.2e-09   1.1e-05       2      35 .]     821     853 ..     820     853 .. 0.89
   4 !   11.9   0.0   1.5e-05      0.14       3      27 ..     857     881 ..     856     889 .. 0.81
   5 !   14.0   0.0   3.4e-06      0.03       7      35 .]     900     928 ..     897     928 .. 0.92
   6 !    3.3   0.0    0.0083        74       2      35 .]     932     966 ..     931     966 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 6.2e-08
                 HHGGGHHHHHTSTTHHHHHHHHHHHSCHH CS
         PUF   1 sikgnlvqLstdqyGnyvvQkllehatee 29 
                 s++++l +Ls+d  Gn +vQkl+e+ ++ 
  CCD24369.1 747 SMIDELPELSSDYLGNTIVQKLFEK-SSD 774
                 699*********************6.444 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 7.2e-07
                 GGHHHHHTSTTHHHHHHHHHHH.SCHHHHHH CS
         PUF   4 gnlvqLstdqyGnyvvQklleh.ateeqkkl 33 
                 ++l+++ ++++G++++Qk++++  t  q++l
  CCD24369.1 786 KYLTSMGVHKNGTWACQKMITMaKTARQIDL 816
                 589999****************888887776 PP

  == domain 3  score: 24.8 bits;  conditional E-value: 1.2e-09
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqkklil 35 
                  k++ + L++dq+Gnyv+Q++l+ ++ ++ ++i+
  CCD24369.1 821 VKNFATPLMNDQFGNYVIQCVLK-FGFPWNDFIF 853
                 5899999***************9.8888888886 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 1.5e-05
                 GGGHHHHHTSTTHHHHHHHHHHHSC CS
         PUF   3 kgnlvqLstdqyGnyvvQkllehat 27 
                 + n++ +++++yG+++v+ +le ++
  CCD24369.1 857 ISNFWIIVQNRYGARAVRACLESHE 881
                 56777799**************865 PP

  == domain 5  score: 14.0 bits;  conditional E-value: 3.4e-06
                 HHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   7 vqLstdqyGnyvvQkllehateeqkklil 35 
                  +Lst+ +G+ ++ ++l+++t++ ++ il
  CCD24369.1 900 KYLSTNNNGTLLLTWFLDTCTLPKRHTIL 928
                 68*********************999886 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.0083
                 HGGGHHHHHTSTTHHHHHHHHHHH.SCHHHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQklleh.ateeqkklil 35 
                 +++n+v+L+ ++ ++  + k+l    +ee +kli+
  CCD24369.1 932 LIPNIVELCRHRLASLTILKILNFrGDEEARKLIF 966
                 689************99999999988888888886 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.5e-10   1.3e-06      10      64 ..     469     518 ..     466     519 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 1.5e-10
                 SSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1  10 vteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkkl 64 
                 +t   L +l sk+G++ s + +r       ++a VeF++ e+A+++++al+gk +
  CCD24369.1 469 LTSTSLATLCSKYGQVISSRTFRG-----LNMALVEFDTVENATRCMDALQGKDV 518
                 68899******************7.....***********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2854  (0.159183); expected 358.6 (0.02)
Passed bias filter:                      610  (0.0340231); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.20u 0.36s 00:00:01.56 Elapsed: 00:00:00.52
# Mc/sec: 7114.72
//
Query:       CCD24370.1  [L=1125]
Description: hypothetical protein NDAI_0D00560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.21   12.1   0.3        1.5    9.3   0.0    2.5  3  Preseq_ALAS  5-aminolevulinate synthase presequence


Domain annotation for each model (and alignments):
>> Preseq_ALAS  5-aminolevulinate synthase presequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.12   2.2e+03       2      35 ..     450     484 ..     449     497 .. 0.79
   2 ?    9.3   0.0   8.5e-05       1.5       2      40 ..     502     544 ..     501     561 .. 0.80
   3 ?   -3.8   0.1      0.97   1.7e+04      31      50 ..     650     669 ..     621     679 .. 0.56

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.12
  Preseq_ALAS   2 avvrrCPFlsrvpqaflqkark.sLlsyAqkCPvm 35 
                  av++ C +l++v  + +++     + s A+ CP +
   CCD24370.1 450 AVLNNCKYLQSVDITGVKEISDdVFDSLARSCPRL 484
                  78999999999998888876663666889999987 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 8.5e-05
  Preseq_ALAS   2 avvrrCPFlsrvpqaflqkarksLl.syAqkCPvmmela...a 40 
                   ++++ P l+rv  ++  +    L+ ++A kCP ++e+    +
   CCD24370.1 502 NFIHHVPMLKRVKITANVNMNDELVeLMADKCPLLVEVDitsS 544
                  589*********9999988888888469********9875444 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 0.97
  Preseq_ALAS  31 kCPvmmelaaralstsaaal 50 
                  +C  + + + r+l +s  + 
   CCD24370.1 650 HCFNITDQGVRTLVQSCPRI 669
                  45555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.31s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 7413.42
//
Query:       CCD24371.1  [L=996]
Description: hypothetical protein NDAI_0D00570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-06   28.9  10.7    4.2e-05   24.1   1.8    2.6  2  BIR       Inhibitor of Apoptosis domain


Domain annotation for each model (and alignments):
>> BIR  Inhibitor of Apoptosis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   1.8   2.3e-09   4.2e-05       1      72 [.      21     112 ..      21     113 .. 0.88
   2 !    9.2   1.8   0.00011       1.9      21      72 ..     175     247 ..     156     248 .. 0.60

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2.3e-09
         BIR   1 RlatFkkn.........WpeskkeakpsaeeLaeaGFyytpts......eskdnvqCfyCklaldgweedD.........dpleeHkkhspkCefl 72 
                 Rl+tF+++         W+++        e++++ GF+y p +       ++d v C+yC++  +++++           ++l++H+  sp+C++l
  CCD24371.1  21 RLQTFRETttidkkkfkWRYTV----IPFENMSQLGFFYHPFKdpktnqIHRDAVCCIYCHHLTSNFQKCRtksiiqtftKVLKKHLDSSPNCSIL 112
                 8999977678898888888554....44589***********9999988899***************999889999999999***********976 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00011
         BIR  21 eeLaeaGFyytpts...............eskdnvqCfyCklal......dgweedDdpleeHkkhspkCefl 72 
                  ++ eaG++ ++ s               + k +++C+yC+  +      ++ +++++ +++ +k+s+kC+fl
  CCD24371.1 175 ISIKEAGLVKYDPSftkfnnllkdkqnkkNFKHSCYCWYCNTLIipdetnNNLSPKEHHIQKIEKNSKKCYFL 247
                 5555566655555555566666666655577899*******9883322223444444555555788899**98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (996 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1884  (0.105081); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 6656.64
//
Query:       CCD24372.1  [L=189]
Description: hypothetical protein NDAI_0D00580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-23   82.2   0.4    5.3e-23   81.4   0.4    1.4  1  Evr1_Alr       Erv1 / Alr family
     0.0093   16.2   0.1      0.017   15.4   0.1    1.5  1  APOBEC1        APOBEC1
  ------ inclusion threshold ------
      0.065   12.0   0.5      0.077   11.8   0.5    1.1  1  O-antigen_lig  O-antigen ligase like membrane protein


Domain annotation for each model (and alignments):
>> Evr1_Alr  Erv1 / Alr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.4   8.8e-27   5.3e-23       2      95 ..      88     174 ..      87     179 .. 0.94

  Alignments for each domain:
  == domain 1  score: 81.4 bits;  conditional E-value: 8.8e-27
                 HHHHHHHHHHHCSHSS..HHHHHHH-CHHHHHHHHHHHSSCHHHHHHHHHHHHHCH.CCCGSSHHHHHHHHHHHHHHHHHHTT...T-HHCHHH CS
    Evr1_Alr   2 slWtllHtlaaevpekpteeqqkelavlkaflkliakfypCeeCaehfekvlaenppekevesrdelvlWlweaHNeVnkrlakeefdcsedkv 95 
                 ++W+ +Htl a++pe+pt+e++++l   k+f++l a++ypC eC+ hf k+l ++p++  ++sr ++++W +++HN Vn+ l+k+++dcs  k+
  CCD24372.1  88 ASWKYFHTLLARFPENPTDEERSKL---KSFIQLYAELYPCGECSYHFVKLLDKHPVQ--TSSRLAAATWGCHMHNIVNQFLKKKQYDCS--KI 174
                 68*****************999999...**********************999**987..9*****************************..55 PP

>> APOBEC1  APOBEC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   2.8e-06     0.017      27      85 ..     104     161 ..      83     174 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.8e-06
     APOBEC1  27 laserhfkpsvscsitwflstspcgkcskaileflsqhpnvtlv.iyvaklfkhldernr 85 
                  ++e+  +++++ +i  + +  pcg+cs +  ++l++hp  t   + +a    h+ +  +
  CCD24372.1 104 PTDEE--RSKLKSFIQLYAELYPCGECSYHFVKLLDKHPVQTSSrLAAATWGCHMHNIVN 161
                 55555..5778899999**********************877651444444456655555 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   1.3e-05     0.077     242     321 ..       6      84 ..       1     102 [. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.3e-05
  O-antigen_lig 242 lkkkklllaiillvligillaiypyspiyrrkelkekeieiksekkeeeeikneikenykseglkeavleqyeyandkqf 321
                    l+kk + l++ ++++++i+++i+ ys+  + +  ++ +  ++s+ ++e+e+++e +e   ++ ++e+++ + +  + k++
     CCD24372.1   6 LNKKHIRLVVGIITMVTIFVLITRYSEELQGQINNISSSTSNSSGNNEKERDPE-AEAKHKKMMEETIMPSMTDTKAKKE 84 
                    677777666667777788889999988888777777777777777788888888.4555555555555544444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1505  (0.0839422); expected 358.6 (0.02)
Passed bias filter:                      878  (0.0489709); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1367.49
//
Query:       CCD24373.1  [L=104]
Description: hypothetical protein NDAI_0D00590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-25   88.9   0.1    2.5e-25   88.3   0.1    1.3  1  G-gamma     GGL domain
  ------ inclusion threshold ------
       0.17   11.8   3.7       0.24   11.3   3.7    1.3  1  JAKMIP_CC3  JAKMIP CC3 domain


Domain annotation for each model (and alignments):
>> G-gamma  GGL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.1   2.8e-29   2.5e-25       4      68 .]      25     104 .]      22     104 .] 0.97

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 2.8e-29
     G-gamma   4 klklkrei.eqLkkeLkrerikvSkAceelidYvestkDpllpevwgppsageNpwiek..............sgcCwil 68 
                 klk+++e+ ++L++eL+reri++S+Ac+++i+Y+++tkD++lp +wg+p++g+N++++                gcC+i+
  CCD24373.1  25 KLKRINELnNKLRNELSRERITASNACLTIINYTNNTKDYTLPDIWGYPPPGSNHFRNNlkrsiqrpttssnsAGCCTIM 104
                 89***********************************************************************9****98 PP

>> JAKMIP_CC3  JAKMIP CC3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   3.7   2.7e-05      0.24     139     176 ..       2      44 ..       1      52 [. 0.74

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.7e-05
  JAKMIP_CC3 139 kwveekQalikrnqeLvekikkle.....eeeskLkqeiqdlr 176
                  +++e+Q + +++q+L  kik+++     e ++kL++e++  r
  CCD24373.1   2 SNLQEQQPFSQQKQQLNLKIKNIKlkrinELNNKLRNELSRER 44 
                 589************8878776542111166788888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1530  (0.0853366); expected 358.6 (0.02)
Passed bias filter:                      735  (0.040995); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 740.19
//
Query:       CCD24374.1  [L=327]
Description: hypothetical protein NDAI_0D00600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-45  153.3   0.1    9.5e-45  153.0   0.1    1.0  1  Aldo_ket_red  Aldo/keto reductase family
     0.0072   16.2   0.0      0.011   15.6   0.0    1.4  1  NT5C          5' nucleotidase, deoxy (Pyrimidine), cytosolic 


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.0   0.1   1.1e-48   9.5e-45      14     291 ..      30     325 ..      23     327 .] 0.90

  Alignments for each domain:
  == domain 1  score: 153.0 bits;  conditional E-value: 1.1e-48
                   TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH.-TTTGGG-EEEEEE....................--SSSTTSSSS-HHHHHHH CS
  Aldo_ket_red  14 eiskeealellrraleaGinffDtAevYgkgqseellGealkk.srkkreeviiatKv....................dlrdaeiksglskenires 89 
                   ++++++ +++l+++++ G+++fDtA+vY +g+se+llGe+lk+ + kk  +  + tK                     +  d  +++gls+++i ++
    CCD24374.1  30 KMTRKKFFQILKHCYDIGFRTFDTADVYSNGESERLLGEFLKEfNIKKGNSGYLLTKTyfpmdetlvlamveapqsesGVLDLVNQQGLSRKHILQA 126
                   6789999************************************999999999*************************99999*************** PP

                   HHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-BTT-HHHHTTHHHHHHHT CS
  Aldo_ket_red  90 leeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveynllreleeegllelckkk 182
                   +++s++rLgt y+D+l++Hr d+++p i  +++al+++v+ G +r+iG S+    q  ++     k    ++v vq +ynll + +e+     ckk+
    CCD24374.1 127 VKNSVERLGT-YIDVLQIHRFDSTTP-IKGTMKALNDVVENGDVRYIGASSMLPTQFVEMqavaDKYDWFQFVNVQSQYNLLYRKDERD----CKKH 217
                   *********6.***************.***********************77766666666668999999************5555554....99** PP

                   T-EEEEBSTTGGGTTGTTTSS---SSSCCC-------..TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEEE--SSHHHHHHHHGGG CS
  Aldo_ket_red 183 gvpliaysplggGlltgkyqseedkedkeprkdlkrd..ertsknldaaeelselakehgvslaqlalryalsqpavgivipgasnieqlednldal 277
                   +++l ++sp  + llt  +   e+  +k+ +++l +    ++ ++ + ++++++l k++g  +a++  ++++    v  +i+g s+++++++  +al
    CCD24374.1 218 NIALTPWSPNYQSLLTISVG-VESIRSKTDKSSLIEIckIWMLQHKEIINRVEDLSKKKGAPMATIPTAWVM--AMVCQSIVGRSSVKRVDEAREAL 311
                   ****************5544.5555555555555555867777888999***********************..9********************** PP

                   G----HHHHHHHHH CS
  Aldo_ket_red 278 elklseeevaelde 291
                   ++k++eee+a+l++
    CCD24374.1 312 KIKFTEEELAYLEK 325
                   **********9987 PP

>> NT5C  5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.3e-06     0.011      52     107 ..     133     195 ..     111     236 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-06
        NT5C  52 slyrf..ltepglFadlepipgarevLeeladegrlvvitaallqfyd.....avkekveWld 107
                 +l  +  + +   F +  pi+g+ + L+ ++++g +++i a+ +   +     av +k +W +
  CCD24374.1 133 RLGTYidVLQIHRFDSTTPIKGTMKALNDVVENGDVRYIGASSMLPTQfvemqAVADKYDWFQ 195
                 555554467778899************************99987533235588********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2312.83
//
Query:       CCD24375.1  [L=486]
Description: hypothetical protein NDAI_0D00610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-38  132.0   0.4    1.2e-38  132.0   0.4    1.8  2  ENTH        ENTH domain


Domain annotation for each model (and alignments):
>> ENTH  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.4   6.4e-43   1.2e-38       1     125 []      16     138 ..      16     138 .. 0.97
   2 ?   -2.9   0.2      0.37   6.7e+03      86     100 ..     220     234 ..     207     243 .. 0.50

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 6.4e-43
                 --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSHHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B-T CS
        ENTH   1 yseteskvreatnndpwGpsnkllteiarltyskkelseiisvitkrLqnnkgkewrsvlKaLtlieYLlknGseqvidwlkenisiiktlsefkyide 99 
                 ys t++ vr+at+nd+  ps + l+ei++ +++++++ ei+++++krL n+kgk w+++ K+Lt+++YL++ Gse+++ w+k+n++iiktl+efk+ d 
  CCD24375.1  16 YSTTQVLVRDATSNDSSNPSFEILYEISKRSFDSVDFFEIMDMLDKRL-NDKGKYWKHIAKSLTVLDYLVRFGSENCVLWCKQNLYIIKTLKEFKLED- 112
                 799*********************************************.*********************************************9955. PP

                 TS-B-HHHHHHHHHHHHHHHT-HHHH CS
        ENTH 100 egkdeglniRkkakkiislledeerl 125
                 ++ de + iR kak++++ll+d+erl
  CCD24375.1 113 DNVDESSIIRVKAKELTALLQDDERL 138
                 589999******************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.37
                 HHHHGGGG---B-TT CS
        ENTH  86 siiktlsefkyidee 100
                 + +++l++++ ++++
  CCD24375.1 220 KKLQELQRLQQLQQQ 234
                 333344444333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3917  (0.218473); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                       157  (0.00875676); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.48
# Mc/sec: 3067.32
//
Query:       CCD24376.1  [L=916]
Description: hypothetical protein NDAI_0D00620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-25   86.7   0.3    3.6e-06   27.5   0.0    7.6  7  Sel1      Sel1 repeat
    1.4e-05   25.4   0.5        3.5    8.5   0.0    5.0  4  TPR_6     Tetratricopeptide repeat
    4.9e-05   23.8   0.1       0.16   12.5   0.0    3.6  3  TPR_19    Tetratricopeptide repeat
    0.00051   20.0   2.8       0.13   12.5   0.0    5.1  5  TPR_8     Tetratricopeptide repeat
     0.0043   16.7   1.0      0.019   14.6   0.1    2.7  2  TPR_11    TPR repeat
     0.0087   16.3   0.1        1.7    9.0   0.0    3.8  3  TPR_12    Tetratricopeptide repeat
     0.0098   15.7  11.9       0.22   11.4   0.1    6.2  7  TPR_1     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.011   16.4   0.0        0.2   12.3   0.0    2.9  2  TPR_16    Tetratricopeptide repeat
      0.012   15.6   0.1       0.29   11.2   0.0    3.4  3  TPR_7     Tetratricopeptide repeat
       0.02   15.7   0.0         16    6.6   0.0    3.3  2  TPR_14    Tetratricopeptide repeat
      0.025   14.5   1.7        2.1    8.4   0.3    2.9  2  Turandot  Stress-inducible humoral factor Turandot
      0.027   14.6  12.5       0.35   11.1   0.0    7.1  8  TPR_2     Tetratricopeptide repeat
      0.052   13.8   0.9       0.63   10.3   0.0    2.9  3  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
       0.12   12.0   0.2       0.43   10.3   0.1    2.0  2  TPR_21    Tetratricopeptide repeat-like domain
       0.29   11.1   0.9         32    4.6   0.0    3.5  3  TPR_10    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0082       9.7       3      28 ..     143     167 ..     141     167 .. 0.89
   2 !   27.5   0.0     3e-09   3.6e-06       3      38 .]     183     218 ..     181     218 .. 0.89
   3 ?    6.2   0.1     0.015        18      11      30 ..     227     246 ..     224     248 .. 0.86
   4 !    9.0   0.0    0.0019       2.3       6      33 ..     415     448 ..     410     450 .. 0.78
   5 ?    1.1   0.0       0.6   7.2e+02      30      38 .]     591     599 ..     583     599 .. 0.92
   6 ?    0.2   0.0       1.2   1.4e+03      24      38 .]     629     643 ..     625     643 .. 0.86
   7 !   24.2   0.1   3.3e-08     4e-05       2      31 ..     677     704 ..     676     708 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0082
        Sel1   3 AmyrLGmfylylnGl.gvpkDpekAie 28 
                 + y L   +++l+G+ g p+++++A++
  CCD24376.1 143 STYLLS--QIHLYGKfGFPQNKSEAHK 167
                 6699**..*******889*******75 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 3e-09
        Sel1   3 AmyrLGmfylylnGl.g.vpkDpekAiewyekAAeqGd 38 
                 A+++L+m+y   +Gl g +p D++k + +++k+A++G+
  CCD24376.1 183 ALFDLAMMY--STGLfGtIPIDISKSLIYFQKSASLGN 218
                 99****888..****995555***************97 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.015
        Sel1  11 ylylnGlgvpkDpekAiewy 30 
                 y y+ Gl vp+D +kA+ +y
  CCD24376.1 227 YKYYMGLNVPRDFNKALLLY 246
                 6689************9988 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.0019
        Sel1   6 rLGmfylylnGl.......gvpk.DpekAiewyekA 33 
                  LG   +y+ G         +pk D + Ai+++e+A
  CCD24376.1 415 LLG--HIYFMGEhietppnEDPKpDLNIAIHYLERA 448
                 699..99999999877764244469999*******9 PP

  == domain 5  score: 1.1 bits;  conditional E-value: 0.6
        Sel1  30 yekAAeqGd 38 
                 y kAAeqG+
  CCD24376.1 591 YSKAAEQGY 599
                 89*****96 PP

  == domain 6  score: 0.2 bits;  conditional E-value: 1.2
        Sel1  24 ekAiewyekAAeqGd 38 
                 + Ai ++ +A +q++
  CCD24376.1 629 NMAITYFSRAFKQNN 643
                 679*******99986 PP

  == domain 7  score: 24.2 bits;  conditional E-value: 3.3e-08
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewye 31 
                  A ++LG  y+y++GlgvpkD+++A ++y 
  CCD24376.1 677 QAVWDLG--YMYEHGLGVPKDIHLAKRYYD 704
                 57789**..999****************95 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0031       3.7       3      30 ..     362     394 ..     362     397 .. 0.82
   2 ?   -1.3   0.0       3.8   4.5e+03       9      28 ..     470     489 ..     466     491 .. 0.84
   3 !    8.5   0.0    0.0029       3.5       7      26 ..     651     670 ..     646     673 .. 0.90
   4 ?    1.8   0.0      0.38   4.6e+02       2      28 ..     678     708 ..     677     710 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0031
                 HHHHHHHHHHH.....HHHHHHHHHHHHHHHH- CS
       TPR_6   3 lyklalsyrkl.....gdtdkAlealerlikeY 30 
                 l++ a+ ++k+      d  +A+++le++ik+Y
  CCD24376.1 362 LFYTAWDLYKGtytqlRDVPQAKRILEKIIKDY 394
                 67777777776687778999************9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.8
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealerlik 28 
                 ++++ ++  kAl  +++ ++
  CCD24376.1 470 CHYAENNIPKALGFYNKMVD 489
                 899988********998765 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0029
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerl 26 
                 +  y+ +g+ dkA+ ++++ 
  CCD24376.1 651 GDIYYDMGQFDKAISIYQSA 670
                 889**************975 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.38
                 HHHHHHHHHHHH....HHHHHHHHHHHHHHH CS
       TPR_6   2 Alyklalsyrkl....gdtdkAlealerlik 28 
                 A + l++ y+ +    +d   A+++++++++
  CCD24376.1 678 AVWDLGYMYEHGlgvpKDIHLAKRYYDQILE 708
                 66789999999669999999********986 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.062        74      35      58 ..     374     397 ..     366     403 .. 0.86
   2 ?    2.7   0.0      0.16   1.9e+02      14      57 ..     445     493 ..     437     506 .. 0.64
   3 !   12.5   0.0   0.00014      0.16      10      54 ..     631     673 ..     629     682 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.062
      TPR_19  35 llalgqldeAealLdalpeedpdd 58 
                 + +l ++ +A+++L+++ +++ +d
  CCD24376.1 374 YTQLRDVPQAKRILEKIIKDYEND 397
                 789999999999999999998875 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.16
      TPR_19  14 leqalqe........dpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 le+a +         +  n +++l   ++++a +++ +A    ++  ++  +
  CCD24376.1 445 LERAVKVletstvvkSRANVDLAL---ICHYAENNIPKALGFYNKMVDSRYN 493
                 555444433333333556666666...9999999999999888887777766 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00014
      TPR_19  10 AlalleqalqedpknaearllLAeallalgqldeAealLdalpee 54 
                 A+ ++++a++++  n +a     ++++ +gq+d+A+ + + + ++
  CCD24376.1 631 AITYFSRAFKQN--NVDAGVVAGDIYYDMGQFDKAISIYQSAALK 673
                 888999998885..55555555*************9999887765 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       5.3   6.3e+03      10      29 ..     373     392 ..     373     392 .. 0.86
   2 ?   -0.7   0.0       1.9   2.3e+03      17      29 ..     438     450 ..     437     451 .. 0.83
   3 ?   -0.8   0.0       2.1   2.5e+03      16      29 ..     627     640 ..     626     644 .. 0.84
   4 !   12.5   0.0   0.00011      0.13       7      27 ..     650     670 ..     648     677 .. 0.86
   5 ?    2.2   0.0      0.22   2.7e+02      15      31 ..     694     710 ..     694     712 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.3
                 HHHHTT-HHHHHHHHHHHHH CS
       TPR_8  10 iylklgdyeeAkeyyekale 29 
                 +y +l d  +Ak  +ek ++
  CCD24376.1 373 TYTQLRDVPQAKRILEKIIK 392
                 5889999999******9886 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHH CS
       TPR_8  17 yeeAkeyyekale 29 
                 ++ A+ y+e+a++
  CCD24376.1 438 LNIAIHYLERAVK 450
                 5669*******98 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 2.1
                 -HHHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekale 29 
                 ++++A+ y+ +a +
  CCD24376.1 627 RKNMAITYFSRAFK 640
                 7899*****99987 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 0.00011
                 HHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyeka 27 
                  g+iy ++g++++A++ y+ a
  CCD24376.1 650 AGDIYYDMGQFDKAISIYQSA 670
                 59**************99865 PP

  == domain 5  score: 2.2 bits;  conditional E-value: 0.22
                 T-HHHHHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekaleld 31 
                 +d++ Ak yy + le++
  CCD24376.1 694 KDIHLAKRYYDQILEIN 710
                 68999**********97 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.9   2.3e+03       7      22 ..     581     596 ..     579     597 .. 0.84
   2 !   14.6   0.1   1.6e-05     0.019       1      20 [.     651     670 ..     651     686 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.9
      TPR_11   7 qGkyeeAieaYkkAlk 22 
                 +G++e A+ +Y+kA +
  CCD24376.1 581 LGNIEIALWEYSKAAE 596
                 6899999999999965 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.6e-05
      TPR_11   1 GdayyeqGkyeeAieaYkkA 20 
                 Gd+yy+ G++++Ai  Y+ A
  CCD24376.1 651 GDIYYDMGQFDKAISIYQSA 670
                 9****************975 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.18   2.1e+02      23      70 ..     442     486 ..     437     491 .. 0.72
   2 !    9.0   0.0    0.0014       1.7      52      71 ..     651     670 ..     648     672 .. 0.59
   3 ?   -1.5   0.0       2.7   3.3e+03      19      36 ..     696     713 ..     694     718 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.18
      TPR_12  23 lellekaleiarrllGpdhpltattlrnLgrly.ralgryeeAlellee 70 
                 + +le+a+ +     ++     +++  +L+ ++ +a ++  +Al ++++
  CCD24376.1 442 IHYLERAVKVL----ETSTVVKSRANVDLALIChYAENNIPKALGFYNK 486
                 55555554444....5667788999999999973677999999999987 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0014
      TPR_12  52 grlyralgryeeAlelleea 71 
                 g++y+ +g++++A+++++ a
  CCD24376.1 651 GDIYYDMGQFDKAISIYQSA 670
                 55566666666666666554 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.7
      TPR_12  19 ydeAlellekaleiarrl 36 
                  + A +++++ lei  +l
  CCD24376.1 696 IHLAKRYYDQILEINHKL 713
                 567889999999997766 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       3.5   4.2e+03      23      30 ..     238     245 ..     237     248 .. 0.53
   2 ?   -0.0   0.0      0.74   8.9e+02      19      30 ..     440     451 ..     437     454 .. 0.82
   3 ?    1.2   0.0      0.31   3.7e+02      10      26 ..     470     486 ..     469     489 .. 0.91
   4 ?   -2.2   0.0       3.7   4.5e+03      14      29 ..     526     541 ..     525     541 .. 0.88
   5 ?    0.5   0.0      0.51   6.1e+02      18      30 ..     629     641 ..     626     642 .. 0.79
   6 !   11.4   0.1   0.00019      0.22       8      27 ..     651     670 ..     651     671 .. 0.91
   7 ?    3.6   0.2     0.055        66      16      33 ..     695     712 ..     694     713 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.5
                 HHHHHHHH CS
       TPR_1  23 yyekALel 30 
                 +++kAL l
  CCD24376.1 238 DFNKALLL 245
                 55566544 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.74
                 HHHHHHHHHHHH CS
       TPR_1  19 eAleyyekALel 30 
                  A+ y e+A+++
  CCD24376.1 440 IAIHYLERAVKV 451
                 59*******986 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.31
                 HHHHTT-HHHHHHHHHH CS
       TPR_1  10 ayfklgkydeAleyyek 26 
                 +++  ++  +Al +y+k
  CCD24376.1 470 CHYAENNIPKALGFYNK 486
                 99*************98 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.7
                 TT-HHHHHHHHHHHHH CS
       TPR_1  14 lgkydeAleyyekALe 29 
                 +++y  A+ +y k Le
  CCD24376.1 526 MKRYPPAVYDYAKMLE 541
                 799********99776 PP

  == domain 5  score: 0.5 bits;  conditional E-value: 0.51
                 HHHHHHHHHHHHH CS
       TPR_1  18 deAleyyekALel 30 
                 + A+ y+++A + 
  CCD24376.1 629 NMAITYFSRAFKQ 641
                 6899****99776 PP

  == domain 6  score: 11.4 bits;  conditional E-value: 0.00019
                 HHHHHHTT-HHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekA 27 
                 G +y+ +g++d+A+  y+ A
  CCD24376.1 651 GDIYYDMGQFDKAISIYQSA 670
                 789***********999876 PP

  == domain 7  score: 3.6 bits;  conditional E-value: 0.055
                 -HHHHHHHHHHHHHHSTT CS
       TPR_1  16 kydeAleyyekALelnPn 33 
                 +   A  yy++ Le+n++
  CCD24376.1 695 DIHLAKRYYDQILEINHK 712
                 566799**********86 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.1   1.4e+03      16      62 ..     441     489 ..     437     492 .. 0.63
   2 ?   12.3   0.0   0.00017       0.2       3      46 ..     650     688 ..     631     693 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.1
      TPR_16  16 AaaaleaalkrdpssPd.aaeAllllgdaal.rqgrlaeAaalyraalr 62 
                 A+++le+a+k    s +   +A   l++++  + ++ ++A+ +y+++++
  CCD24376.1 441 AIHYLERAVKVLETSTVvKSRANVDLALICHyAENNIPKALGFYNKMVD 489
                 5555555555443333335556666666555599999999999988765 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00017
      TPR_16   3 laraalragdyddAaaal.eaalkrdpssPdaaeAllllgdaalr 46 
                 +++++++ g++d+A+  +  aalk+    P+   A + lg ++ +
  CCD24376.1 650 AGDIYYDMGQFDKAISIYqSAALKMS---PQ---AVWDLGYMYEH 688
                 57888888888888888877777777...76...88888877765 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       8.1   9.7e+03       8      24 ..     373     389 ..     373     393 .. 0.88
   2 ?   11.2   0.0   0.00024      0.29       6      24 ..     651     669 ..     650     677 .. 0.86
   3 ?   -2.6   0.0       6.6   7.9e+03       8      21 ..     696     709 ..     695     715 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.1
       TPR_7   8 lysrlGdyeeAielyeq 24 
                 +y +l+d  +A +++e+
  CCD24376.1 373 TYTQLRDVPQAKRILEK 389
                 69999**9999999987 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00024
       TPR_7   6 arlysrlGdyeeAielyeq 24 
                 +++y ++G++++Ai++y+ 
  CCD24376.1 651 GDIYYDMGQFDKAISIYQS 669
                 89***************98 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 6.6
       TPR_7   8 lysrlGdyeeAiel 21 
                 ++ + ++y++ +e+
  CCD24376.1 696 IHLAKRYYDQILEI 709
                 56666677766665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.039        47       3      36 ..     366     399 ..     365     405 .. 0.91
   2 ?    6.6   0.0     0.014        16       7      33 ..     650     677 ..     644     687 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.039
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddae 36 
                 a+ ++   + +l+d  +A ++l+++++++ +d +
  CCD24376.1 366 AWDLYKGTYTQLRDVPQAKRILEKIIKDYENDVD 399
                 7999999********************9998865 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.014
      TPR_14   7 laeallalGdpdeAiallrra.lalaPd 33 
                 ++++++  G++d+Ai +++ a l+  P+
  CCD24376.1 650 AGDIYYDMGQFDKAISIYQSAaLKMSPQ 677
                 57899**************973555554 PP

>> Turandot  Stress-inducible humoral factor Turandot
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.3    0.0017       2.1       3      45 ..     355     397 ..     353     403 .. 0.91
   2 ?    4.1   0.1     0.037        44       8      42 ..     474     508 ..     471     514 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0017
    Turandot   3 DdatkikniqeliaiYekyssslqlspderekldrlireykee 45 
                 D++++++  +++ ++Y+  +++l + p+ +  l+++i++y+++
  CCD24376.1 355 DEDQLVDLFYTAWDLYKGTYTQLRDVPQAKRILEKIIKDYEND 397
                 88899999999*****************************974 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.037
    Turandot   8 ikniqeliaiYekyssslqlspderekldrlirey 42 
                 ++ni++++ +Y+k++ s   + + + +l +l +e+
  CCD24376.1 474 ENNIPKALGFYNKMVDSRYNNGNIDYQLSKLAKEH 508
                 69************999766666666666665555 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1         5     6e+03      23      31 ..     238     246 ..     237     248 .. 0.57
   2 ?   -0.9   0.0         2   2.4e+03      11      33 ..     374     396 ..     373     397 .. 0.86
   3 ?   -0.6   0.0       1.6   1.9e+03      19      29 ..     440     450 ..     437     454 .. 0.81
   4 ?    1.6   0.0      0.32   3.8e+02      10      28 ..     470     488 ..     469     494 .. 0.88
   5 ?   -0.1   0.1       1.1   1.3e+03       6      22 ..     580     596 ..     575     597 .. 0.87
   6 ?   -0.6   0.0       1.7     2e+03      18      31 ..     629     642 ..     626     643 .. 0.82
   7 ?   11.1   0.0   0.00029      0.35       8      27 ..     651     670 ..     649     674 .. 0.91
   8 ?    1.3   0.1      0.39   4.6e+02      19      31 ..     698     710 ..     694     713 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5
       TPR_2  23 afekAleld 31 
                 +f+kAl l+
  CCD24376.1 238 DFNKALLLY 246
                 566666665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2
       TPR_2  11 yyklgdyeeAleafekAleldPn 33 
                 y +l d  +A++ +ek ++ ++n
  CCD24376.1 374 YTQLRDVPQAKRILEKIIKDYEN 396
                 779999**********9998776 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.6
       TPR_2  19 eAleafekAle 29 
                  A++++e+A++
  CCD24376.1 440 IAIHYLERAVK 450
                 599******98 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.32
       TPR_2  10 ayyklgdyeeAleafekAl 28 
                 ++y+ ++  +Al +++k +
  CCD24376.1 470 CHYAENNIPKALGFYNKMV 488
                 89*************9965 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 1.1
       TPR_2   6 nlGlayyklgdyeeAle 22 
                  lG++ ++l +y +A+e
  CCD24376.1 580 LLGNIEIALWEYSKAAE 596
                 699999*******9987 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 1.7
       TPR_2  18 eeAleafekAleld 31 
                 + A+ +f +A + +
  CCD24376.1 629 NMAITYFSRAFKQN 642
                 679*******9876 PP

  == domain 7  score: 11.1 bits;  conditional E-value: 0.00029
       TPR_2   8 GlayyklgdyeeAleafekA 27 
                 G++yy +g++++A+  ++ A
  CCD24376.1 651 GDIYYDMGQFDKAISIYQSA 670
                 99*************99977 PP

  == domain 8  score: 1.3 bits;  conditional E-value: 0.39
       TPR_2  19 eAleafekAleld 31 
                  A++++++ le++
  CCD24376.1 698 LAKRYYDQILEIN 710
                 69*********98 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       5.7   6.8e+03      18      34 ..     136     152 ..     119     156 .. 0.66
   2 ?    0.0   0.1      0.85     1e+03       7      60 ..     440     499 ..     437     507 .. 0.62
   3 ?   10.3   0.0   0.00053      0.63       8      51 ..     631     672 ..     626     680 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 5.7
                 HHH--HHHHHHHHHHHH CS
      ANAPC3  18 aetespedayllAlcly 34 
                  + ++ +++yll++ ++
  CCD24376.1 136 ENFNNVQSTYLLSQIHL 152
                 44566677888888775 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.85
                 HHHHHHHHHH......HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHH CS
      ANAPC3   7 nAiflaerll.....aaetespedayllAlclylngqykrAyellrka.klnskslgcry 60 
                  Ai ++er++     ++  +s  ++ l   c+y  ++  +A+ +++k+ +++ ++ ++ y
  CCD24376.1 440 IAIHYLERAVkvletSTVVKSRANVDLALICHYAENNIPKALGFYNKMvDSRYNNGNIDY 499
                 566677777744433233444444444335999999999999999988666666655555 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00053
                 HHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSH CS
      ANAPC3   8 AiflaerllaaetespedayllAlclylngqykrAyellrkakl 51 
                 Ai +++r++  ++++ ++    +  +y +gq+++A+ ++++a l
  CCD24376.1 631 AITYFSRAF--KQNNVDAGVVAGDIYYDMGQFDKAISIYQSAAL 672
                 889999999..777777777789****************99944 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.3   5.2e+03      30      46 ..     598     614 ..     594     644 .. 0.75
   2 ?   10.3   0.1   0.00036      0.43     151     179 ..     649     677 ..     635     686 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.3
      TPR_21  30 dyqeeqaeeAsalYqql 46 
                  y+++q ++As +Yq+ 
  CCD24376.1 598 GYETAQVSAASLMYQTP 614
                 68899999999999975 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00036
      TPR_21 151 lrGDilvaqgkldeAraaYqaAlaaleek 179
                 + GDi++ +g++d+A + Yq A  +++++
  CCD24376.1 649 VAGDIYYDMGQFDKAISIYQSAALKMSPQ 677
                 68********************9998877 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.08        96      11      33 ..     373     395 ..     372     396 .. 0.93
   2 ?   -2.5   0.0       4.5   5.4e+03      19      31 ..     439     451 ..     437     454 .. 0.76
   3 ?    4.6   0.0     0.027        32      10      28 ..     652     670 ..     650     672 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.08
      TPR_10  11 alrqrgrydeAealleealairr 33 
                 +++q+++  +A ++le+ +  ++
  CCD24376.1 373 TYTQLRDVPQAKRILEKIIKDYE 395
                 79****************99887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.5
      TPR_10  19 deAealleealai 31 
                 + A  +le+a+ +
  CCD24376.1 439 NIAIHYLERAVKV 451
                 5688999999987 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.027
      TPR_10  10 nalrqrgrydeAealleea 28 
                  +++++g++d+A  +++ a
  CCD24376.1 652 DIYYDMGQFDKAISIYQSA 670
                 58************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 6623.87
//
Query:       CCD24377.1  [L=300]
Description: hypothetical protein NDAI_0D00630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-19   70.4  17.3      8e-05   23.3   0.3    6.4  6  WD40          WD domain, G-beta repeat
    3.9e-06   27.1   5.6      0.053   13.8   0.2    4.8  5  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
  ------ inclusion threshold ------
      0.035   14.0   0.9      0.035   14.0   0.9    2.1  2  TFIIIC_delta  Transcription factor IIIC subunit delta N-term
      0.072   12.0   0.3          7    5.5   0.0    3.5  4  Ge1_WD40      WD40 region of Ge1, enhancer of mRNA-decapping 


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.4e-05       0.2       9      37 ..       7      36 ..       2      37 .. 0.84
   2 !   23.3   0.3   1.8e-08     8e-05       2      38 .]      44      83 ..      43      83 .. 0.82
   3 !    7.5   0.1    0.0019       8.3       9      36 ..      97     127 ..      89     128 .. 0.68
   4 !    8.3   0.1     0.001       4.5      24      38 .]     169     189 ..     136     189 .. 0.65
   5 !   17.7   0.8   1.1e-06    0.0048       6      37 ..     202     237 ..     198     238 .. 0.90
   6 !    8.5   0.1   0.00085       3.8      14      38 .]     261     285 ..     250     285 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.4e-05
                SSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  9 GHss.vtslafspdgawlasGsdDgtvriW 37
                +H+  +++   + +g+ la++s D+t++i+
  CCD24377.1  7 AHNElIHDAVLDYYGKRLATCSSDKTIKIF 36
                7866788888999********88*****97 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 1.8e-08
                EEEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40  2 qclrtltGH.ssvtsla..fspdgawlasGsdDgtvriWd 38
                +++ tl GH ++v+ ++   ++ g+ las+s+Dg+v iW+
  CCD24377.1 44 KLIDTLIGHeGPVWRVDwaHPKFGTILASCSYDGKVLIWK 83
                567899***999****5555555555*************6 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0019
                 SS.SSEEEEEEETTSSE.........EEEEETTSEEEE CS
        WD40   9 GH.ssvtslafspdgaw.........lasGsdDgtvri 36 
                  H  sv+s+      +w         la++s Dg+v +
  CCD24377.1  97 VHsASVNSI------QWapheygavlLAAAS-DGKVSV 127
                 58666****......5555555566556778.**9975 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.001
                 E......EEEEETTSEEEEEE CS
        WD40  24 w......lasGsdDgtvriWd 38 
                        +++G+ D+ v++W+
  CCD24377.1 169 NvdelrrFVTGGADNLVKVWK 189
                 1444444789*99*******6 PP

  == domain 5  score: 17.7 bits;  conditional E-value: 1.1e-06
                 EEESS.SSEEEEEEETTSSE...EEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtslafspdgaw...lasGsdDgtvriW 37 
                 tl+GH ++v+++a+sp+  +   las s D+++ iW
  CCD24377.1 202 TLEGHsDWVRDVAWSPSVLLrsyLASVSQDRSCIIW 237
                 799**666****99999999*999999********* PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.00085
                 EEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  14 tslafspdgawla.sGsdDgtvriWd 38 
                 +  ++s +g+ la sG+ D++v +W+
  CCD24377.1 261 WRASWSLSGNILAlSGG-DNKVTLWK 285
                 666799999**977***.*******6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0068        30      48      89 ..      19      61 ..       4      64 .. 0.73
   2 !    9.5   0.3   0.00027       1.2      36      90 ..      51     108 ..      24     110 .. 0.70
   3 !   13.8   0.2   1.2e-05     0.053      14      81 ..      74     144 ..      68     156 .. 0.71
   4 ?    0.4   0.1      0.19   8.4e+02      33      67 ..     202     239 ..     181     262 .. 0.64
   5 !    5.5   0.1    0.0045        20      45      65 ..     264     284 ..     236     290 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0068
  ANAPC4_WD40 48 pdgklLavaysdgevrlldae..sgkvvhslsvksekavtclgW 89
                   gk La   sd +++++++e  + k++ +l  ++   v  ++W
   CCD24377.1 19 YYGKRLATCSSDKTIKIFEVEgeNYKLIDTLIGHEG-PVWRVDW 61
                 5699**************997225566776666555.4666666 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00027
  ANAPC4_WD40  36 kedsevrsLaWkpd..gklLavaysdgevrlldaesgkv..vhslsvksekavtclgWg 90 
                  ++++ v  + W +   g++La    dg+v + + e+g+   + s  v+s  +v++++W+
   CCD24377.1  51 GHEGPVWRVDWAHPkfGTILASCSYDGKVLIWKEENGRWsqIASHAVHSA-SVNSIQWA 108
                  56777888888653349********************8622445556666.69****97 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 1.2e-05
  ANAPC4_WD40  14 tedgellvfRlngqrvwtl.eedkedsevrsLaWkpd..gklLavaysdgevrlldaesgkvvhslsvkse 81 
                  + dg++l+   +  r  ++ +++ ++ +v+s++W p   g +L  a sdg+v++++ ++  +++ + ++++
   CCD24377.1  74 SYDGKVLIWKEENGRWSQIaSHAVHSASVNSIQWAPHeyGAVLLAAASDGKVSVVEFKENGTLSPIIIDAH 144
                  555666665554433333345588999*******8764489***************998888877766655 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.19
  ANAPC4_WD40  33 eedkedsevrsLaWkpd...gklLavaysdgevrllda 67 
                  + ++++  vr++aW+p+    + La + +d ++ +   
   CCD24377.1 202 TLEGHSDWVRDVAWSPSvllRSYLASVSQDRSCIIWTQ 239
                  55667777899999886222355666666666666555 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.0045
  ANAPC4_WD40  45 aWkpdgklLavaysdgevrll 65 
                  +W+ +g++La +  d++v l 
   CCD24377.1 264 SWSLSGNILALSGGDNKVTLW 284
                  7*****************986 PP

>> TFIIIC_delta  Transcription factor IIIC subunit delta N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.18   8.2e+02     116     143 ..      70      93 ..      27     135 .. 0.65
   2 ?   14.0   0.9   7.8e-06     0.035      78     141 ..     190     248 ..     182     288 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.18
  TFIIIC_delta 116 LavLtttgeLsiyeasgnkekssWtrvl 143
                   La  + +g++ i++     e+++W +++
    CCD24377.1  70 LASCSYDGKVLIWK----EENGRWSQIA 93 
                   55555556666663....3345555443 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7.8e-06
  TFIIIC_delta  78 igeeqsslisldtkinaqsqvvaaaWSPlgLsknrrClLavLtttgeLsiyeasgnkekssWtr 141
                   +++e+s +i  dt ++ +  v+++aWSP+    + r++La ++++    i+++++n  ++ W +
    CCD24377.1 190 YNKENSTYILDDTLEGHSDWVRDVAWSPSV---LLRSYLASVSQDRSCIIWTQEDN--EGPWKK 248
                   67888885444445555567789*****97...89****************97766..888854 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0016         7     185     218 ..       7      40 ..       1      54 [. 0.83
   2 ?    0.2   0.0     0.065   2.9e+02     199     215 ..      67      83 ..      49     114 .. 0.74
   3 ?    0.2   0.1     0.062   2.8e+02     111     160 ..     200     248 ..     183     263 .. 0.77
   4 ?    0.0   0.0     0.074   3.3e+02     189     221 ..     259     291 ..     224     295 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0016
    Ge1_WD40 185 eehsliveaafspdGtalatasedGevkffqvyl 218
                  ++ li +a++   G  lat+s+d ++k f v  
  CCD24377.1   7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG 40 
                 3445899***********************9965 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.065
    Ge1_WD40 199 GtalatasedGevkffq 215
                 Gt la +s dG+v  ++
  CCD24377.1  67 GTILASCSYDGKVLIWK 83 
                 88899999999887664 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.062
    Ge1_WD40 111 eapietvvsesdrviWCPyipeedaeesdddeaskllvltrgdkaeiwsv 160
                 ++  e ++  ++ v W P +   +   s++++    +++t++d+   w+ 
  CCD24377.1 200 DDTLEGHSDWVRDVAWSPSVLLRSYLASVSQDR-SCIIWTQEDNEGPWKK 248
                 556677888899999999999998766666655.5789999998877765 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.074
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqvylede 221
                  +  a++s  G  la +  d +v +++ +le++
  CCD24377.1 259 VLWRASWSLSGNILALSGGDNKVTLWKENLEGN 291
                 57899999**************99999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2322.39
//
Query:       CCD24378.1  [L=315]
Description: hypothetical protein NDAI_0D00640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-43  149.0   0.0    1.5e-43  148.8   0.0    1.1  1  PNP_UDP_1  Phosphorylase superfamily


Domain annotation for each model (and alignments):
>> PNP_UDP_1  Phosphorylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   0.0   8.3e-48   1.5e-43       3     233 ..      41     312 ..      39     313 .. 0.91

  Alignments for each domain:
  == domain 1  score: 148.8 bits;  conditional E-value: 8.3e-48
                 EEEESSH.....HHHHHHHHH....EEEEEEEEEE.....TTEEEEEEEETTEEEEEEE--....SSHHHHHHHHHHHHHHHC...--SEEEEEEEEEE CS
   PNP_UDP_1   3 aiivgsp.....gevellaes....pleetpfgre....grgfkfvtGtlkgkpvvivstG....iGkpnaavvaeirllkef...gvkaiiriGtaGg 81 
                  ii+gs+     +++ +l+      p+ e+p  ++    g+++++++G+++g pvv+        +G +  ++v++ir+l++     +k +i++++aGg
  CCD24378.1  41 LIICGSGlggisNRLSTLSPPpliiPYSEIPRVKKstvpGHSGTLIFGKMNGSPVVLMNGRlhtyEGNSIWETVFPIRALHSMpknAIKNLIVTNAAGG 139
                 699999998888888888888*****************************88888886666***99999999*********555558************ PP

                 SSTTT-TT-EEEEEEEEE...SSSCCGCCTHHCC..TCCCCTTSSEE--HHHHHHHHHCHHTTT....TTEEEEEEEEESESS-CHHHHHHHHHHTC-C CS
   PNP_UDP_1  82 lnpdlkvGDvvipddain...fdgrsplygpkee..gqyfpdsydapadpelrallkeaaealg....ikvhrGvvatadgfyaeteaelrllrrlgad 171
                 lnp++k  D++++ d+in   ++g++pl gp+ +  g++f++ +da +d elr+ll+ + ++lg    +k+ +G++ +++g+++et+ae+r++r++g d
  CCD24378.1 140 LNPEFKACDLMCIYDHINlpgLSGLHPLKGPNFDeeGPRFLPLSDA-YDLELRKLLFGKFKELGinerRKLFEGTYTFVSGPTFETRAESRFIRSMGGD 237
                 ******************888888888888888899**********.**************************************************** PP

                 EEESSHHHHHHHHHHTT--EEEEEEEEETTTBETTCTCH..............HCCCHHHHHHHHHHHHHHHHHH CS
   PNP_UDP_1 172 aveMEtaavaqlArelgipfaairvvsdlaaggadaeath.............eeveefaqeaaknaaalllall 233
                 av+M+t++++++Ar++g++++a+++++++ + ++ a+a               +ev e++++a+ ++++l++a++
  CCD24378.1 238 AVGMSTVPEVIVARHCGWKVLALSLITNESVLDHPASALDenpvpldagiashKEVLENGKAASSDVEILIEAIV 312
                 ****************************8888666666556666777777777******************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       278  (0.0155056); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2521.90
//
Query:       CCD24379.1  [L=435]
Description: hypothetical protein NDAI_0D00650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-44  151.2   0.3    2.5e-44  150.1   0.3    1.6  1  Cyclin_N  Cyclin, N-terminal domain
    1.8e-32  111.9   0.4    4.5e-32  110.6   0.0    1.9  2  Cyclin_C  Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1   0.3   2.8e-48   2.5e-44       1     126 [.     181     306 ..     181     307 .. 0.99

  Alignments for each domain:
  == domain 1  score: 150.1 bits;  conditional E-value: 2.8e-48
                 HHHHHHHHHHCHTS-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHH CS
    Cyclin_N   1 dilknlieqelkflpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlv 99 
                 di+++++  el+ +p+p+y+d qp+l++++Ra+lidw+vev+ kf+l petlfl++n++dRflskk v+ +k+qlvga++L++AaK+eei++p+l+d++
  CCD24379.1 181 DIFTYMRDLELNLRPNPHYMDVQPHLKWSYRATLIDWIVEVHLKFQLLPETLFLTINLIDRFLSKKLVTLNKFQLVGASALFIAAKYEEINCPTLKDMI 279
                 89************************************************************************************************* PP

                 HHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N 100 yitdeafteeeilemErliLetLnfdl 126
                 yi d+ +t+ee+le+E+ +++ L+f++
  CCD24379.1 280 YILDNLYTREELLEAEKFMIDSLEFEI 306
                 *************************98 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.59   5.3e+03      69     103 ..      68     102 ..      50     116 .. 0.64
   2 !  110.6   0.0     5e-36   4.5e-32       1     116 [.     309     421 ..     309     424 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.59
                 HHHC---HHHHHHHHHHHHHHHHHHHGSS--HHCC CS
    Cyclin_C  69 ehytgyskedlkpcvelilellssapssklqavrr 103
                  hy+++  + +++ +e  ++++++ ++ ++++  +
  CCD24379.1  68 PHYSKFASKYINQYYENKEPAAINDNNIRTTNKVN 102
                 56777777777777777776665555555544444 PP

  == domain 2  score: 110.6 bits;  conditional E-value: 5e-36
                 --HHHHHHHHHCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC---HHHHHHHHHHHHHHHHHHHGSS-- CS
    Cyclin_C   1 ptplsFlrrflkaadasedselrtlakylleltlldydflsyppSliAaaalllarstlnspewtetlehytgyskedlkpcvelilellssapssklq 99 
                 p p+sFlrr++ka+++  ++++rtlakylle+t++d ++ s p S++A++a++l++ +l++++w+ ++++y+gy++++l p+v+li +++ + p+ ++ 
  CCD24379.1 309 PGPMSFLRRISKADEY--EYNTRTLAKYLLETTIMDPKLCSSPTSWLASGAYYLSKIILGDNDWSLKHVYYSGYTQDQLIPLVSLIIDNC-RIPNINHP 404
                 88***********999..889*********************************************************************.9******* PP

                 HHCCCCTCGGGCCCGGS CS
    Cyclin_C 100 avrrkyssskfhkvstl 116
                 a+++kyss+++h++s+ 
  CCD24379.1 405 AIWEKYSSRRYHRSSQT 421
                 *************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1022  (0.0570026); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3306.83
//
Query:       CCD24380.1  [L=354]
Description: hypothetical protein NDAI_0D00660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.4e-06   25.6   2.4    1.2e-05   24.9   2.4    1.3  1  zf-C2H2_10  C2H2 zinc-finger
  ------ inclusion threshold ------
       0.56   10.0   2.7       0.52   10.1   1.2    1.7  2  zf-CCHC_4   Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   2.4   1.3e-09   1.2e-05       5      21 ..     285     301 ..     282     302 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.3e-09
  zf-C2H2_10   5 tCSYChetGHtRAkCek 21 
                 +CSYCh +GHtR +C+k
  CCD24380.1 285 KCSYCHIVGHTRDQCFK 301
                 8**************87 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         1   9.1e+03       2      23 ..     189     210 ..     189     211 .. 0.76
   2 ?   10.1   1.2   5.9e-05      0.52      33      47 ..     285     299 ..     281     301 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1
   zf-CCHC_4   2 DvtkpLrafmkikkesGeeati 23 
                 D+t  +r+ +++ +e+ e a i
  CCD24380.1 189 DITIIMRKLRDLHFEGKEPAFI 210
                 6777788889999998886655 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 5.9e-05
   zf-CCHC_4  33 fCyiCgvlGHsdkrC 47 
                 +C+ C ++GH++++C
  CCD24380.1 285 KCSYCHIVGHTRDQC 299
                 7************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2819.47
//
Query:       CCD24381.1  [L=107]
Description: hypothetical protein NDAI_0D00670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 791.99
//
Query:       CCD24382.1  [L=234]
Description: hypothetical protein NDAI_0D00680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-15   55.2   0.0    9.7e-15   54.8   0.0    1.2  1  rve       Integrase core domain
  ------ inclusion threshold ------
      0.074   12.8   0.0       0.22   11.3   0.0    1.8  1  rve_3     Integrase core domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   1.1e-18   9.7e-15       3     118 ..      27     144 ..      25     145 .. 0.91

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 1.1e-18
         rve   3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsde..mdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftr 98 
                 +p +++++Dv+  v++ +    +++ +++d ++r+ ++++l ++  +   +v+ +l + ++r+++++++ ++ D+g+ey +k ++++l+++gi+  f+ 
  CCD24382.1  27 EPFQYIHTDVFgPVSVDKPY-PSWFVAFTDEATRFRWVFPLENKtaDLMLHVITALVNTIKRQFNSKVLCFQFDHGREYDNKLLQNYLESNGIQSIFNS 124
                 799********999977777.***********************44444567788889999999999******************************** PP

         rve  99 pgrpqdnGkvErfhrtlkde 118
                 ++++ +nG++Er++ tl ++
  CCD24382.1 125 VADSASNGVAERMNLTLLND 144
                 ***************99876 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.4e-05      0.22       2      32 ..     117     147 ..     116     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.4e-05
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdelln 32 
                 gi+  +  + +   Ng +E++n tl + + +
  CCD24382.1 117 GIQSIFNSVADSASNGVAERMNLTLLNDCRT 147
                 788888999999**************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1698.42
//
Query:       CCD24383.1  [L=514]
Description: hypothetical protein NDAI_0D00690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-69  231.7   2.2    3.6e-69  231.7   2.2    2.2  2  Flo11        Flo11 domain
      0.004   17.3   0.1        1.4    9.2   0.0    2.6  2  MucB_RseB_C  MucB/RseB C-terminal domain


Domain annotation for each model (and alignments):
>> Flo11  Flo11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.7   2.2     4e-73   3.6e-69       1     150 []      43     193 ..      43     193 .. 0.99
   2 ?   -0.8   0.7      0.16   1.5e+03      72      93 ..     413     434 ..     384     472 .. 0.67

  Alignments for each domain:
  == domain 1  score: 231.7 bits;  conditional E-value: 4e-73
                 S-TTSB-HHHHHTTTB--EEEEEEEEEEEETTEEEEEEEEEESS---GGGEEEEEEES-SSS-S-EEEEETTTTEE--S-TTEEEEEEEEE--.BSSSS CS
       Flo11   1 gcpdldfewhakntnipkydldvesvewvkdnlYevtihvkgeeqidlkylssLkiigisgpdstvvlygknektslidnptdftatfqvygd.ekdnc 98 
                 gcp+l+f++++k tn++kydl++++vew+++nlY++ti+vkge+qi+lkyl+sLkii+++gp++tv+lygkne+t+lidnptdftatfq+yg    d+c
  CCD24383.1  43 GCPNLNFDFKSKCTNTLKYDLKILNVEWLHENLYQITINVKGEKQIPLKYLYSLKIIEVDGPQGTVQLYGKNENTYLIDNPTDFTATFQIYGGsPRDRC 141
                 6********************************************************************************************999*** PP

                 EEE----EEEEEES-GGGGGGGGG--SB-SEEEEEB-SS-B-TTSBBSSSB- CS
       Flo11  99 kvwlPnFqiqyeylqgdaaqysetwkwgttsFdlstgcdnydnqgnsqtdfp 150
                  +wlPnFqiqyeylqgdaaqy++tw+wgtt+Fdl++gc+n+dn+gnsqtdfp
  CCD24383.1 142 DIWLPNFQIQYEYLQGDAAQYADTWEWGTTAFDLISGCNNFDNMGNSQTDFP 193
                 ***************************************************8 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.16
                 TTTEE--S-TTEEEEEEEEE-- CS
       Flo11  72 nektslidnptdftatfqvygd 93 
                  + ++ + n+t +++t++  ++
  CCD24383.1 413 TTTINTTANTTTYSITINTIPN 434
                 4446666777777777765555 PP

>> MucB_RseB_C  MucB/RseB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0     0.002        18       3      33 ..     325     355 ..     323     362 .. 0.77
   2 !    9.2   0.0   0.00015       1.4       3      60 ..     363     419 ..     361     436 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.002
                  XXXSEEES---TT-EEEEEEEEE-SSSS-EE CS
  MucB_RseB_C   3 easgWqlkwlpaGFkkvsesrrklaaseeev 33 
                  ++s+W+ ++lp GF  +s+++ + ++s  ++
   CCD24383.1 325 TTSHWSSSTLPTGFLSISNTTSHWSSSTLPT 355
                  5789*************99988876655555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00015
                  XXXSEEES---TT-EEEEEEEEE-SSSS-EEEEEEEESSS-EEEEEEEE--TT-.-EE CS
  MucB_RseB_C   3 easgWqlkwlpaGFkkvsesrrklaaseeeveqllysDGLasvsvfvepaseeseegl 60 
                  ++s+W+ ++lp GF ++s+++ + ++s  ++ +ll s+  +svs+ + p+++++ +++
   CCD24383.1 363 TTSHWSSSTLPTGFLLTSNTTSHRSSSTLPTGYLLTSN-TTSVSIPILPSTTTTINTT 419
                  6799************9999988877777777776666.6899999988877663333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3712.42
//
Query:       CCD24384.1  [L=265]
Description: hypothetical protein NDAI_0D00700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0036   17.5   0.3      0.012   15.8   0.3    2.0  1  HALZ         Homeobox associated leucine zipper
     0.0065   16.5   0.9      0.014   15.4   0.9    1.6  1  SUIM_assoc   Unstructured region C-term to UIM in Ataxin3
  ------ inclusion threshold ------
      0.013   15.7   1.8      0.013   15.7   1.8    2.0  2  DUF4770      Domain of unknown function (DUF4770)
      0.089   12.9   1.9       0.11   12.5   0.3    2.0  2  MIT          MIT (microtubule interacting and transport) doma
       0.78   10.3  14.7      0.054   14.0   1.6    2.8  2  Spectrin     Spectrin repeat
       0.86   10.0  17.3       0.28   11.5   2.7    2.6  2  Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C te
        1.4    9.8   8.8       0.59   11.0   0.5    2.5  2  Csm2_III-A   Csm2 Type III-A
        6.2    6.9   8.7       0.14   12.2   0.7    2.3  3  Prp18        Prp18 domain


Domain annotation for each model (and alignments):
>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   5.5e-06     0.012      20      41 ..     230     251 ..     224     253 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 5.5e-06
        HALZ  20 dydsLkkenekLkaelqeLkek 41 
                 + d+L ken+kL++++ +L+e+
  CCD24384.1 230 NLDNLIKENKKLLNQIVKLRER 251
                 679*****************96 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.9   6.3e-06     0.014      33      60 ..      77     104 ..      26     107 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.3e-06
  SUIM_assoc  33 qqqqqqqqqdppgqlshprekpttSsga 60 
                  q+qqqqqq+  gq+  ++ +p + s++
  CCD24384.1  77 IQRQQQQQQQHNGQVQGLNQRPNSKSSN 104
                 5888888889999999999999876655 PP

>> DUF4770  Domain of unknown function (DUF4770)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.7   1.8   5.9e-06     0.013      49     116 ..      50     117 ..      28     160 .. 0.75
   2 ?   -0.5   0.4      0.56   1.2e+03     120     141 ..     207     238 ..     166     263 .. 0.49

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.9e-06
     DUF4770  49 vneqlllsaiakLDleaTlreLdriLPlpeeskkerkkqekkkkkrlklkkkkekkrkekekkkkknk 116
                  ne l+   + k D+  T+ eLd++L + ++++++++++ + +  +++ ++k+++ + ++++ ++ ++
  CCD24384.1  50 NNEILVALDMLKKDISKTICELDKLLTIQRQQQQQQQHNGQVQGLNQRPNSKSSNVSFNHRTPNMLSS 117
                 4666666778889*****************99999999998888888888877777666665555544 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.56
     DUF4770 120 s..........pYfekqvrpkttrskkfsskp 141
                 s          +Y +k++    t+ +++++++
  CCD24384.1 207 SqfdmfrkelgFYEQKKFSEYDTNLDNLIKEN 238
                 12323333333666666555555533333322 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3     5e-05      0.11       6      52 ..       9      52 ..       8      58 .. 0.85
   2 ?   -2.5   0.1       2.5   5.7e+03      46      62 ..     238     254 ..     230     260 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5e-05
         MIT  6 elvkkAveeDnagnyeeAlelYkealelLlqalkekneerrellrek 52
                el+  A ee ++gn+   +++Yke ++ L +++k  + ++re + ++
  CCD24384.1  9 ELIDDAEEESRKGNITNSVRKYKETVKSLEELIK--S-TKREDINNE 52
                79999****************************9..3.556655544 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.5
         MIT  46 rellrekieeYleRaee 62 
                  ++l ++i +  eR ++
  CCD24384.1 238 NKKLLNQIVKLRERWDS 254
                 44555566666666555 PP

>> Spectrin  Spectrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   5.6      0.38   8.4e+02      30      88 ..      31      97 ..       2     100 .. 0.66
   2 ?   14.0   1.6   2.4e-05     0.054      27     102 ..     188     265 .]     175     265 .] 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.38
                SSSHHHHHHHHH..HHHHHHHHHHHH.....HHHHHHHHHHHHHH.HHTTHTTHHHHHHHHHHHHHH CS
    Spectrin 30 gkdleevqallk..khkaleaelaaq.....qervkalnelaekl.ldeghsaseeieerleelner 88
                 +++ ++++l+k  k +++ +e+  +     ++  k+++el + l ++++++++++ + ++++ln+r
  CCD24384.1 31 KETVKSLEELIKstKREDINNEILVAldmlkKDISKTICELDKLLtIQRQQQQQQQHNGQVQGLNQR 97
                5566666666666655556665544311111444456778888888888888888888888888876 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.4e-05
                 SSCSSSHHHHHHHHH.....HHHHHHHHHHH.HHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Spectrin  27 edlgkdleevqallk.....khkaleaelaa.qqervkalnelaeklldeghsaseeieerleelnerWeeLkelaaerkqk 102
                 ++  +d +e  ++l+     +++ +++el   +q+++ + ++  ++l++e    ++++ +++ +l+erW++L e a++r++k
  CCD24384.1 188 DERKNDEDEFIKQLNttfesQFDMFRKELGFyEQKKFSEYDTNLDNLIKE----NKKLLNQIVKLRERWDSLVESAKQRRNK 265
                 45567777777777778888999********9999999999999999888....7************************985 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   6.5     0.032        72       4      75 ..      14      85 ..      12      96 .. 0.80
   2 ?   11.5   2.7   0.00013      0.28       9      78 ..     194     262 ..     185     265 .] 0.89

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.032
  Uso1_p115_C  4 seleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekeke 75
                 +e+es++ ++ +  +k+k  ++sl++ ++s++++  ++++    ++l++ ++k+  el+kl    +++++++
   CCD24384.1 14 AEEESRKGNITNSVRKYKETVKSLEELIKSTKREDINNEILVALDMLKKDISKTICELDKLLTIQRQQQQQQ 85
                 6899******************************77777778888888888888888877765555555544 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00013
  Uso1_p115_C   9 eaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekekek 78 
                  e + +k++n++ +++ +  +k+l   eqk ++ + +++ ++l +enkkl +++ klr++ +   e++k+ 
   CCD24384.1 194 EDEFIKQLNTTFESQFDMFRKELGFYEQK-KFSEYDTNLDNLIKENKKLLNQIVKLRERWDSLVESAKQR 262
                  455599***********************.999****************************999999864 PP

>> Csm2_III-A  Csm2 Type III-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   0.00027      0.59       8      63 ..      11      63 ..       4      68 .. 0.81
   2 ?    2.4   2.3      0.12   2.7e+02      49      99 ..     196     256 ..     146     259 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00027
                HHHHHHHHHHHH.TTS-STTTHHHHHHHHHHHHHHHHTHHHH.HHHTHHHHHHHHHH CS
  Csm2_III-A  8 vekaeeigkelkkkklktsqiRkfydevkrieekikkkkeee.seeilrklkllkpk 63
                ++ aee ++    k   t+ +Rk+ ++vk++ee ik++k e+ ++eil  l +lk  
  CCD24384.1 11 IDDAEEESR----KGNITNSVRKYKETVKSLEELIKSTKREDiNNEILVALDMLKKD 63
                455554444....5567999******************9999************965 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.12
                 H.....HHHTHHHHHHHHHHH.HHHHHH....HHHHHHHHHHHHHHHHH--SH.HHHHHHH CS
  Csm2_III-A  49 e.....seeilrklkllkpkl.aYaagr....eeavkelsevlkkaidkvkkskekfkrfv 99 
                 e     +   ++++ +++ +l  Y++++    + ++ +l ++ kk+++++ k +e+ + +v
  CCD24384.1 196 EfikqlNTTFESQFDMFRKELgFYEQKKfseyDTNLDNLIKENKKLLNQIVKLRERWDSLV 256
                 2666677788899999999995678888776668999999999999999988888776665 PP

>> Prp18  Prp18 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.7   6.3e-05      0.14      17      66 ..      12      61 ..       2      70 .. 0.82
   2 ?   -1.5   0.1         1   2.3e+03      23      31 ..      84      92 ..      65     147 .. 0.54
   3 ?   -1.8   0.2       1.3   2.8e+03      31      48 ..     220     237 ..     185     262 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6.3e-05
       Prp18 17 erseeekksvegkkesatlkqtkedlkpLlkklkkkkleedileklveiv 66
                +  eee ++ +  +++  +k+t ++l++L+k+ k+++++++il +l  + 
  CCD24384.1 12 DDAEEESRKGNITNSVRKYKETVKSLEELIKSTKREDINNEILVALDMLK 61
                45566777778899999**************************9987655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1
       Prp18 23 kksvegkke 31
                +++++g+ +
  CCD24384.1 84 QQQHNGQVQ 92
                222222222 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.3
       Prp18  31 esatlkqtkedlkpLlkk 48 
                 e++ +++  ++l +L+k+
  CCD24384.1 220 EQKKFSEYDTNLDNLIKE 237
                 344444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2696  (0.150371); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 1939.63
//
Query:       CCD24385.1  [L=493]
Description: hypothetical protein NDAI_0D00710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-62  211.8   0.8      2e-62  210.9   0.2    1.7  2  Tubulin          Tubulin/FtsZ family, GTPase domain
    1.2e-19   70.8   0.3    2.4e-19   69.7   0.3    1.6  1  Tubulin_C        Tubulin C-terminal domain
    1.9e-06   28.2   0.6    6.5e-06   26.4   0.6    1.9  1  Misat_Tub_SegII  Misato Segment II tubulin-like domain
  ------ inclusion threshold ------
        0.1   11.8   0.3       0.24   10.6   0.2    1.6  1  Tubulin_2        Tubulin like


Domain annotation for each model (and alignments):
>> Tubulin  Tubulin/FtsZ family, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.9   0.2   4.4e-66     2e-62       1     195 [.       4     222 ..       4     224 .. 0.96
   2 ?   -2.2   0.0      0.91   4.1e+03      66     109 ..     418     453 ..     385     467 .. 0.63

  Alignments for each domain:
  == domain 1  score: 210.9 bits;  conditional E-value: 4.4e-66
                 EEEEEEEHHHHHHHHHHHHH...HHHCH.........................HHHT......TTEEEEE....EEESBHHHHHTS-GS.......EEE CS
     Tubulin   1 eiivigvGqcGnqignelwellakehgiqsdg.....................dslesfFse.sgkveyiprsvaidtdpqvlneikags.elfnpnkl 76 
                 eii++++GqcGn++g+++w++la+ehg++++g                     d ++ fF+e +++ +y+pr+++id++p+++  ++++   +f+ ++ 
  CCD24385.1   4 EIITLQIGQCGNHVGKQFWSQLADEHGLNRSGestqattnttdnnaktniardDFTTPFFKEnNNSTRYTPRAIMIDMEPSAIFDVQNHFpGFFDDRNT 102
                 7***************************98788*******************777788998756678899***************************** PP

                 E--CCC..CTTC--TT-HHHHHHHHHHTHHHHHHHHTT-SE.SEEEEEEETTSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE--GG.G-HHHHHHHHHH CS
     Tubulin  77 llgkeg..agnngaggypevgkeaaeeileeirkevekcdslqgffitaslgGGTGSGlgpvilevlkeeypkalvvtvvvlPsefsevvvepynaila 173
                 ++++ +  agn +a+gy   g+  +++ l++i+ke++++++++gf+i++s++GGTGSGlg+ +le+++e+ypk+++ t++v+P ++sevvv+pyn+il+
  CCD24385.1 103 WISQGElgAGNTWAKGYDC-GTTNEDTFLNMIDKEIDSTENFEGFQIIHSVAGGTGSGLGSSLLEAISERYPKKFLSTYSVFPGKESEVVVQPYNTILT 200
                 **999999********998.******************************************************************************* PP

                 HHHHHHT-SEEEEEEHHHHHCC CS
     Tubulin 174 lkelieesdavividNdaLlki 195
                 l++l e+sda i++dN+aLl++
  CCD24385.1 201 LRRLAENSDAAIIFDNNALLDL 222
                 *******************986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.91
                 GS......EEEE--CCCCTTC--TT-HHHHHHHHHHTHHHHHHH CS
     Tubulin  66 agselfnpnklllgkegagnngaggypevgkeaaeeileeirke 109
                 a       +k +l++ + gn++ +g+ e   +  e +++ i++ 
  CCD24385.1 418 A-------KKAFLKTFEDGNLFKNGQDEF-IASREVVQNVIDEY 453
                 2.......355666666788888888775.34555555555554 PP

>> Tubulin_C  Tubulin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.3   5.4e-23   2.4e-19       1     125 [.     273     410 ..     273     411 .. 0.93

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 5.4e-23
                 TTC-EEEEEEESSSCTT........TTTCS-HHHHHHHHHTCSGGGBSSSTSTTTSSEEEEEEEEEESSSHHHHHHHHHHHHHTTTS-BSTTSTTTEEE CS
   Tubulin_C   1 PrlhFlltsyaPlvsae........kaavektsvqdvtrallepknimvkvdprkgkylaiallirGdvepkevnkavqrikekkkaqfveWiptgikv 91 
                 P l Fl  s++P++s+         ++  ++++  dv+ +ll+p+n ++++++++ +y+++ ++i G+v+ +++++a+ +i+++ +  f +W ++ ++v
  CCD24385.1 273 PDLQFLSPSFTPFTSDYvtqtqthhNTYKRNNTAYDVLLDLLDPSNSLISSHVNNPTYFNVFNTIIGNVDRNDITRAIGKIQQRIN--FAPWASNIVHV 369
                 8899***********998877655555567899**************************************************998..*********** PP

                 EEEECECT-TTTS.......SCEEEEEEEEGGGHHHHHHHH CS
   Tubulin_C  92 alnkkspyvkkqs.......kvsvlmlaNttsiaelfkrll 125
                 ++ ++spy+ +++       + +++mla +t i +++ r++
  CCD24385.1 370 NVGRRSPYLIEKKtnntctnEINGMMLASSTQILSVLDRAC 410
                 *********9999999***99************99998875 PP

>> Misat_Tub_SegII  Misato Segment II tubulin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.6   1.5e-09   6.5e-06       2      66 ..       4      82 ..       3      87 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.5e-09
  Misat_Tub_SegII  2 EivtlqlGnyaNyvgtHfWNt..Qesyftydeeeee...........sevdhdvlfreget......kqgqvtytPRllivDlk 66
                     Ei+tlq+G+  N+vg +fW +   e+ ++ + e+ +           +++ +        t      +++++ ytPR++++D++
       CCD24385.1  4 EIITLQIGQCGNHVGKQFWSQlaDEHGLNRSGESTQattnttdnnakTNIAR-----DDFTtpffkeNNNSTRYTPRAIMIDME 82
                     9******************963367778777666666776665444434422.....22112333337899***********86 PP

>> Tubulin_2  Tubulin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.2   5.2e-05      0.24     157     185 ..     145     173 ..      75     188 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.2e-05
   Tubulin_2 157 nvfVvgSLaGGTGSGiflDvayllrkilk 185
                  + ++ S+aGGTGSG+   ++  + + ++
  CCD24385.1 145 GFQIIHSVAGGTGSGLGSSLLEAISERYP 173
                 46799**********97777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3577.79
//
Query:       CCD24386.1  [L=505]
Description: hypothetical protein NDAI_0D00720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-45  153.8   0.4    5.2e-45  153.1   0.4    1.3  1  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   0.4   2.9e-49   5.2e-45       3     176 ..     163     338 ..     161     339 .. 0.93

  Alignments for each domain:
  == domain 1  score: 153.1 bits;  conditional E-value: 2.9e-49
                     TTB-SEE-GGGEEEETTSEEEEEEEEEE.EEEEEECCEESSEEEEEEEE---STTEEEEEEEETGGTSTTEEEEEEEETT-TTEEEEEEEBTTBS CS
  Glyco_hydro_16   3 eefevtwsksavsvengetltltldkes.gsrikskksflyGkvearikaaksaGvvtafylssedekahdEiDiEflGndtgkvqtnvygkGkg 96 
                     + +++++s+s+    n   ++l ++k++ gs+i s+k+flyGk ++r+++++s+Gvvt ++l+s   +  dEiD+EflG++ + vq+n+y +G+ 
      CCD24386.1 163 KMYNFIYSGSTSIDPNLGDIVLGMPKRTtGSQIASTKQFLYGKAKVRMRTGRSRGVVTGLVLIS---QVGDEIDFEFLGSELNSVQSNYYYQGEL 254
                     5688888888886666689*******888**********************************9...89*************************9 PP

                     GE..EEEEETSS-TTTS-EEEEEEEETTEEEEEETTEEEEEEESSHHH.HT.....--EESEEEEEEEEEEBSHHHSSE-EEEEEEE CS
  Glyco_hydro_16  97 kr..ekrlslwfdptedfHtYaieWtpdkikfyVDgkpvrtltkkeae.ev....kyPqftpmkvavslwpgsdwateqgkvkidwa 176
                      +   +r+  + d  +++H+Y+i+W++++i+++VDg +vrtl k++++ ++    kyPq tpm++++ +wpg+ ++++ g  +i wa
      CCD24386.1 255 IHtrMQRFFINTDIWANYHDYEIDWNQERIQWIVDGHVVRTLFKRDTWdGNlrifKYPQ-TPMRLEIAIWPGGAETNAPG--TISWA 338
                     8556999999**************************************666988778**.********************..99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3739.50
//
Query:       CCD24387.1  [L=447]
Description: hypothetical protein NDAI_0D00730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-14   53.8   0.3    1.8e-14   53.8   0.3    1.6  2  Cellulase  Cellulase (glycosyl hydrolase family 5)
  ------ inclusion threshold ------
       0.21   11.6   0.1        1.7    8.6   0.0    2.5  3  DUF3783    Domain of unknown function (DUF3783)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.3     2e-18   1.8e-14      11     172 ..     105     270 ..      94     334 .. 0.72
   2 ?   -2.7   0.2      0.35   3.1e+03     139     170 ..     381     411 ..     373     439 .. 0.59

  Alignments for each domain:
  == domain 1  score: 53.8 bits;  conditional E-value: 2e-18
                 EEECETTSCGGSHHHHHHHHHHHT-SEEEEEEE.C.TGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESS.........TTTCSSSSTTTTH CS
   Cellulase  11 kglstswgnpyttkalidevkdagfntvRlpvs.w.gelvenapdykvdenslerveevvkyakenglyvildiHse.........egwltkadgnsse 98 
                 + l+ +w++ y +++ ++ ++++gfn+vR+p++ w    + n++ y v+  + + +++++++a +ngl+v +d+H           +       g  ++
  CCD24387.1 105 NRLQQHWSSFY-QESDFKDIASQGFNLVRIPIGyWaF-KTLNDDPY-VTGLQESYLDQAIQWARNNGLKVWVDLHGAagsqngfdnS-------GLRDT 193
                 56677899865.778889999***********95644.44478888.77778899*********************95544333320.......22222 PP

                 HHHHHH............HHHHHHHH.HHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHH.HHHHHHHHHHHHH.HTTSSEEEEEC CS
   Cellulase  99 dtaeef............fkklwtqi.AerykkndevvifelmNEPhgnntgaewtseeadev.kayaeeaikaIRa.vgpnrliiveg 172
                  +                +k l+++  ++++   d+v++ el NEP g          ++d++ ++y + +++ +R+ v ++++ii+  
  CCD24387.1 194 IQ---MlddnnlavtldvIKYLLKKYsSNQF--TDTVIGVELINEPLGPA-------MDVDKLkNDYLKPCYDYLRNeVQGDQVIIIHD 270
                 22...11223333332224444444414555..899************33.......23466625799*******97367789999876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.35
                 CTCHHHTTHHHHHHHHHHHHHHHHTTSSEEEE CS
   Cellulase 139 ewtseeadevkayaeeaikaIRavgpnrliiv 170
                 +w++e +++ ++y+e+ ++a    g+ ++i +
  CCD24387.1 381 SWSYERRNNTRRYVEAQLDAFEMRGG-WIIWC 411
                 56666666666666666665544444.44444 PP

>> DUF3783  Domain of unknown function (DUF3783)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.28   2.5e+03       7      27 ..     151     171 ..     150     175 .. 0.83
   2 ?   -2.1   0.0      0.44   3.9e+03       6      27 ..     183     204 ..     183     206 .. 0.84
   3 ?    8.6   0.0    0.0002       1.7      28      47 ..     408     427 ..     391     429 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.28
     DUF3783   7 gfsseeldklldalkkaglpi 27 
                 g+++  ld++++  +++gl++
  CCD24387.1 151 GLQESYLDQAIQWARNNGLKV 171
                 6777889**********9984 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.44
     DUF3783   6 sgfsseeldklldalkkaglpi 27 
                 +gf++  l + +++l+ ++l++
  CCD24387.1 183 NGFDNSGLRDTIQMLDDNNLAV 204
                 799***9*99999999988765 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.0002
     DUF3783  28 plkAvlTptNinWtlkeLle 47 
                 ++++  T+t+++W++  L++
  CCD24387.1 408 IIWCYKTETSLEWSVQNLIQ 427
                 688999************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3179.77
//
Query:       CCD24388.1  [L=1484]
Description: hypothetical protein NDAI_0D00740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-54  184.0   0.0    8.3e-54  182.6   0.0    1.7  1  SNF2_N        SNF2 family N-terminal domain
    2.2e-15   57.0   0.0    7.2e-15   55.3   0.0    2.0  1  Helicase_C    Helicase conserved C-terminal domain
    3.7e-05   23.5   1.6     0.0001   22.1   1.6    1.7  1  Prok-RING_4   Prokaryotic RING finger family 4
    8.8e-05   22.4   5.0    0.00021   21.2   5.0    1.7  1  zf-RING_5     zinc-RING finger domain
    0.00019   21.2   1.5    0.00044   20.0   1.5    1.6  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    0.00039   20.2   3.1    0.00096   19.0   3.1    1.6  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0029   17.9   5.0     0.0063   16.8   5.0    1.6  1  zf-RING_2     Ring finger domain
     0.0072   16.3   2.5      0.016   15.2   2.5    1.6  1  zf-RING_UBOX  RING-type zinc-finger
  ------ inclusion threshold ------
      0.014   15.4   0.0      0.014   15.4   0.0    3.3  3  ResIII        Type III restriction enzyme, res subunit
      0.036   13.9   5.2      0.079   12.9   5.2    1.6  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
      0.042   14.1   1.0       0.13   12.5   1.0    1.9  1  23S_rRNA_IVP  23S rRNA-intervening sequence protein
        6.9    7.3   8.4         51    4.5   5.0    3.7  3  YtxH          YtxH-like protein


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.6   0.0   5.6e-57   8.3e-54      52     350 .]     823    1145 ..     810    1145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 182.6 bits;  conditional E-value: 5.6e-57
                  HHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS.-EEE--SSHHHH------------- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N   52 kqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsss.alrvlvyggqkkmkkkntkvapkll 147 
                  ++  +GG+LaD+mGLGKTvq +al+la+r+k e++k            Liv+P ++l+ W+ e+e+ v+++ a   ++ygg+      n++ + k l
  CCD24388.1  823 QSRKKGGLLADDMGLGKTVQGIALMLANRSKDESRKT----------NLIVAPVAVLRVWQGELETKVKKQgAFSTFIYGGN------NKVSSWKDL 903 
                  56789*********************99987777775..........5********************98725667777775......45667889* PP

                  ----EEEE-HHHHHHHT....................................TTS-S-S...-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE CS
                  xxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  148 adydvvittYdvlsreaelq..............................kkrsvlkqve...wkrvvlDEghtlknstskaaeavskLstsnrwil 211 
                  a yd v+++Y +l+ e +                                    ++   +    +r++lDEg+++kn+++kaa+a+++L++ +rw+ 
  CCD24388.1  904 ARYDAVMVSYPTLAIEFKKHwptklgkeskdlppvpdvramnslerkrriI-FPPFFTNKiltFFRIILDEGQNIKNKNTKAAKACCTLDGIYRWVF 999 
                  *************977665588************************99963.3344333323389******************************** PP

                  -S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHHHHH.........HHHHHHHHHHHTT-STTEE---GGGT.....--S---EEEEEEEEE--H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxx RF
      SNF2_N  212 tGTPiqnsledlygLlkfLreepfgekqtfdkllqrpie.........aqaekgrsrLlqllqrlmlrrakkdv.....eknlPpkteeiiflklsk 294 
                  +GTPiqns+ +ly+L+ fLr+ p+   + f   + rp+          + +++ +++ + ll+ +mlrr+k+d        +lP k++e+   kl+ 
  CCD24388.1 1000 SGTPIQNSMDELYSLVRFLRIAPYHREERFMADIGRPFLrnrsgsyddQDKKQAIKKVRVLLSAIMLRRTKTDKidgkpLLELPGKEVEVNTSKLEG 1096
                  **********************************************988889999*****************9887655569*************** PP

                  HHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHHH---XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  295 verksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacnhpqlv 350 
                  +e+++Y++l ++  kka+  ++ +  a         +++l lll+lrqac hp+lv
  CCD24388.1 1097 EELEFYTDLETKNQKKAAILMRRK--ARGGY-----SNVLTLLLRLRQACVHPELV 1145
                  *******55555554444444333..33333.....459**************986 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   4.8e-18   7.2e-15       8     110 ..    1318    1422 ..    1307    1423 .. 0.87

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 4.8e-18
                  HHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHH CS
  Helicase_C    8 ellkleeeggkilifvntidrlekvklllekk.gikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyi 101 
                  e + ++++++ki+if+++++ ++ ++ +le+k ++ ++ ++g l+ ++r +i+++f  + e++ +Li+ +++  G++++++n+Vi++d+ +n+    
  CCD24388.1 1318 EVF-ENSSTDKIVIFSQFTSFFDIFSHFLETKlKVPYLLYTGALSGQKRSDIISRFYrEAEQRiLLISMKAGNSGLTLTCANHVIIVDPFWNPFVEE 1413
                  333.78999***********9988677777777***********************7644555499******************************* PP

                  HHHTTSSST CS
  Helicase_C  102 qriGRtgRa 110 
                  q+ +R++R+
  CCD24388.1 1414 QAQDRCYRI 1422
                  ********7 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   1.6   6.9e-08    0.0001       1      27 [.    1194    1223 ..    1194    1229 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 6.9e-08
  Prok-RING_4    1 CvlCgeq...ekkailepCgHlvCkeCfds 27  
                   C +C eq   e++ il  CgH++C++Cfd 
   CCD24388.1 1194 CFVCMEQlelESTSILTGCGHMMCEACFDP 1223
                   99****9999******************95 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   5.0   1.4e-07   0.00021       2      33 ..    1194    1225 ..    1193    1251 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.4e-07
   zf-RING_5    2 CnkCfeklskeekfyltsCgHifCekClkkll 33  
                  C +C+e+l+ e+  +lt CgH++Ce+C++   
  CCD24388.1 1194 CFVCMEQLELESTSILTGCGHMMCEACFDPFY 1225
                  9*******99******************9876 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   1.5     3e-07   0.00044       3      31 ..    1192    1222 ..    1190    1230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3e-07
                  SB-TTTSSS...BS-EEETTEEEEEE-HHHHH CS
  zf-C3HC4_3    3 eeCviCler...prnvvllpCgHlvlCeeCae 31  
                   +C +C+e+   +++ +l  CgH+ +Ce+C++
  CCD24388.1 1192 MTCFVCMEQlelESTSILTGCGHM-MCEACFD 1222
                  68******77779999999*****.*****86 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   3.1   6.4e-07   0.00096       2      32 ..    1194    1226 ..    1193    1230 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.4e-07
  zf-C3HC4_2    2 CpiCldml..kdpsvvtpCgHvfCqkCilrsLe 32  
                  C +C++ l  + +s +t CgH  C+ C+++  e
  CCD24388.1 1194 CFVCMEQLelESTSILTGCGHMMCEACFDPFYE 1226
                  *****976116778888***********98655 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   5.0   4.2e-06    0.0063       2      36 ..    1193    1227 ..    1192    1250 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.2e-06
   zf-RING_2    2 eCpICleelssadsvlllpCgHvfhreClerwlrs 36  
                  +C +C+e+l+ +++ +l+ CgH++++ C++ + ++
  CCD24388.1 1193 TCFVCMEQLELESTSILTGCGHMMCEACFDPFYEE 1227
                  7********9877777779**********986555 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   2.5     1e-05     0.016       1      26 [.    1194    1227 ..    1194    1247 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1e-05
  zf-RING_UBOX    1 CpIClelft...dPlvlpCGHtFCreCl.....w 26  
                    C +C+e+++   + ++++CGH  C+ C      +
    CCD24388.1 1194 CFVCMEQLElesTSILTGCGHMMCEACFdpfyeE 1227
                    88******9643224469*********9655431 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   2.9       2.2   3.3e+03      88     119 ..     441     473 ..     382     529 .. 0.53
   2 ?   15.4   0.0   9.3e-06     0.014      12     118 ..     815     920 ..     773    1003 .. 0.80
   3 ?   -3.7   0.2       7.1   1.1e+04      96     112 ..    1295    1317 ..    1263    1341 .. 0.42

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.2
                 EESSS-B--........-SEEEEEHHHHHHTH. CS
      ResIII  88 kvsgdkkka.kekdstnkkilvttiqsldadse 119
                 kv++ ++++   ++++ ++ +v++ q+l +++e
  CCD24388.1 441 KVKEAQQSFtITQKDNVTQNVVMERQKLLKEKE 473
                 222222222333444445555555555555552 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 9.3e-06
                 HHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEE CS
      ResIII  12 ienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvtt 110
                 +  +l k+++ r+k gl++   G GKT+  ++l+ + ++k + +k+ ++v   ++l  ++ e++   +++ ++ + ++ g++k ++ kd    + ++++
  CCD24388.1 815 L-HWLLKIEQSRKKGGLLADDMGLGKTVQGIALMLANRSKDESRKTNLIVAPVAVLRVWQGELETKVKKQGAFSTFIYGGNNKVSSWKDLARYDAVMVS 912
                 3.34557777999***************************9999*******************999999988888888888887777777777777777 PP

                 HHHHHHTH CS
      ResIII 111 iqsldads 118
                 + +l  + 
  CCD24388.1 913 YPTLAIEF 920
                 77776666 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 7.1
                  -.............-SEEEEEHH CS
      ResIII   96 a......kekdstnkkilvttiq 112 
                  +      + + s+++k ++  i+
  CCD24388.1 1295 NyridfnHLEPSQKMKQCFDVIN 1317
                  22223332222333333333333 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   5.2   5.3e-05     0.079       1      32 [.    1194    1227 ..    1194    1249 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.3e-05
                  -TTT-S--SS-E...E-TTS--B-CHHHHHHHHC CS
    zf-C3HC4    1 CpiCleeakepn..elleCkHsfCskCirkilks 32  
                  C +C+e ++ ++   l+ C+H +C++C +  +++
  CCD24388.1 1194 CFVCMEQLELEStsILTGCGHMMCEACFDPFYEE 1227
                  999***9998887899***********9999885 PP

>> 23S_rRNA_IVP  23S rRNA-intervening sequence protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.0   8.9e-05      0.13      57     105 ..     338     386 ..     330     387 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.9e-05
                   HHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHH CS
  23S_rRNA_IVP  57 efirflniargslaEletqlelakdlgylseeefeelleeleeiskmln 105
                   +  r+ n  r sl  +e+q++++k++    eee+++++++++++sk l+
    CCD24388.1 338 KMNRYENRLRESLTNTENQVKILKRRLTFREEELKDIQKKCDSLSKRLV 386
                   4556667799************************************997 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.35   5.2e+02      33      70 ..     331     385 ..     329     390 .. 0.72
   2 ?    4.5   5.0     0.034        51      19      64 ..     406     450 ..     388     506 .. 0.73
   3 ?   -3.3   0.1       9.6   1.4e+04      52      70 ..    1436    1457 ..    1413    1462 .. 0.54

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.35
        YtxH  33 kaddlkekakelleeakeka.................kekaedlkekvkekadel 70 
                 +++++ +k++++ ++++e                   +e+ +d+++k ++ +++l
  CCD24388.1 331 QYNNYMNKMNRYENRLRESLtntenqvkilkrrltfrEEELKDIQKKCDSLSKRL 385
                 5566666666666666666666666668888888999999999999988877766 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.034
        YtxH  19 APksGketRkdlkekaddlkekakelleeakekakekaedlkekvk 64 
                 A ++  +tR++l++++  +++++ +l+ e+ e  +ek+++++++++
  CCD24388.1 406 AKEKRDNTREKLRQQTGVASDQTRKLI-EFVELKNEKVKEAQQSFT 450
                 555666666666666666666665554.333333666666666655 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 9.6
        YtxH   52 a...kekaedlkekvkekadel 70  
                      ++++++l++k +e +d +
  CCD24388.1 1436 KnsvEDRIAALQDKKREMVDAA 1457
                  0333555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1889  (0.10536); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.99u 0.33s 00:00:01.32 Elapsed: 00:00:00.50
# Mc/sec: 8923.51
//
Query:       CCD24389.1  [L=243]
Description: hypothetical protein NDAI_0D00750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-42  144.1   0.0    5.7e-42  144.0   0.0    1.0  1  HRI1      Protein HRI1


Domain annotation for each model (and alignments):
>> HRI1  Protein HRI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.0   3.2e-46   5.7e-42       2     230 .]       4     240 ..       3     240 .. 0.87

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 3.2e-46
                 EEEEEEEESSS--.B..--B--EEE.-T.--EEEEEEBSS--CC.CTTS-..EEEEEEE-GGGEEEE..-SSE.E.EEEE--SEEHHH........... CS
        HRI1   2 iskRksirwppeepsEptsTlvLts.ps.grfVDiRilkepesekeeepeplleWafaGtststset..tegelvshstfthwiDsrv......eeaaa 90 
                 + kR+ +++  ++ +  ++T++L+s ++ g++ ++R+l++p++ + +e++  +eWafaGt++++ +t  + +e++ +++f++wiD ++      ++  +
  CCD24389.1   4 LLKRIAFEVAGNP-D--ERTFTLSSgSNdGHYLSLRPLVKPRTPEGKEFP--FEWAFAGTNKDITVTpiEGSENTVKQDFNFWIDINAylnvpnTHRGV 97 
                 6789999998866.5..577777775445************999999888..***************652455677************99776544666 PP

                 ......HCTTS-EEEEEEE-.TT-..S--EEEEEEEEEB-TTSSS-BB--....---EEEEEE-S.T...EEEEEEETTEEEEEE.ETT...GGGEEEE CS
        HRI1  91 DeGdmyelpsgltlEkGemvnpat..gkveeYeElWrdldpakteeeeev....kvrcvvleledsedderGlvvrvGqycqGil.rkg...ekeltve 179
                  +  +++ +sg+++E Ge++ p +  ++  ++ ElW+++d++k++    +    + +++vl+++dse+   Glv++vG+++qGil +k+   +k+l++ 
  CCD24389.1  98 VNTVWTTWDSGCIKEAGEVF-PFGkdKQAVPFIELWQPIDANKEDLVIVQesnkTLKSIVLKIDDSEY--SGLVIVVGKWVQGILiKKSdgtKKGLNFM 193
                 677788888***********.888789999************99987766888899********9888..9**************5544899899**** PP

                 EEEE-TTS-.EEEEEEEST.GGGS.--...--TT--TT-EEEETTEEEEEEE CS
        HRI1 180 RweweedegewkrtvriGe.adkflPcvaleaeelevgdtvevgglkWevvE 230
                 R ++ +++g++k ++++G  ++kf P    ++++le++++++v gl+W+v+E
  CCD24389.1 194 RLQE-ASNGSYKSLIEYGIdSSKF-PK---KFDSLEKDAVLSVAGLNWTVIE 240
                 ****.88889********977788.**...********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1653.55
//
Query:       CCD24390.1  [L=267]
Description: hypothetical protein NDAI_0D00760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2028.88
//
Query:       CCD24391.1  [L=1289]
Description: hypothetical protein NDAI_0D00770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.9e-205  682.1   0.0   4.9e-205  681.8   0.0    1.1  1  Hydantoinase_B  Hydantoinase B/oxoprolinase
   5.6e-101  337.6   0.6   1.3e-100  336.5   0.0    1.8  2  Hydantoinase_A  Hydantoinase/oxoprolinase
    5.9e-58  195.5   0.6    4.4e-56  189.4   0.0    2.5  2  Hydant_A_N      Hydantoinase/oxoprolinase N-terminal region
  ------ inclusion threshold ------
       0.17   12.4   1.3       0.33   11.5   0.2    2.0  2  DUF2482         Hypothetical protein of unknown function (DUF
       0.67   10.7   4.1        2.9    8.6   0.2    3.4  4  Ribosomal_L6    Ribosomal protein L6


Domain annotation for each model (and alignments):
>> Hydantoinase_B  Hydantoinase B/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  681.8   0.0  1.4e-208  4.9e-205       1     515 [.     752    1288 ..     752    1289 .] 0.96

  Alignments for each domain:
  == domain 1  score: 681.8 bits;  conditional E-value: 1.4e-208
  Hydantoinase_B    1 DpitlevfrnrlmsiaeemgrtlqrtaiSpnikerlDfscalfdadgelvaqaphipvhlgsmseavkavlekfegelkpGDvlltNdPyagg 93  
                      Dp+ l++f++r+m iae+mg  l++t++S+n+kerlDfscalfd++g+lva+aph+pvhlgsms++v a+++ ++g+lkpGDv++tN+P  gg
      CCD24391.1  752 DPVLLSIFSHRFMDIAEQMGIQLRKTSVSTNVKERLDFSCALFDPEGNLVANAPHVPVHLGSMSTCVAAQAKLWNGKLKPGDVIITNHPDIGG 844 
                      9*************************************************************************99***************** PP

  Hydantoinase_B   94 tHlpDitvitPvfhege.lvffvasraHhaDiGGitpGsmppdateifeEGlrippvklveegeleedvlelllanv..........Rtpedn 175 
                      tHlpDitvi+P f +   ++f+vasraHhaDiGGi pGs+pp+++e++eEG++i +  l+++g  +ed++e+l              R ++dn
      CCD24391.1  845 THLPDITVISPAFSSSGnILFYVASRAHHADIGGILPGSIPPNSKELYEEGAAIYSELLMKDGIFQEDLVEYLFITEpashpgcsgaRRISDN 937 
                      *************86546**********************************************999999966644459************** PP

  Hydantoinase_B  176 lgDlkAqiaanqvgerrlkelieeyGldtveaamdeildnaeravraalaelpd....gtyeaedylddgipikvtvt..idgdeatvDftgt 262 
                      l+DlkAqiaan++g++++++l++e+   ++ ++m++i+ na ++++++l++l +    ++y+  dy+ddg++i+++vt  i++++ ++Dftgt
      CCD24391.1  938 LSDLKAQIAANNKGIQLIAALVKEFKYPVILKYMQAIQLNASQTIKEMLRQLVQhfgsNEYSGVDYMDDGSRIELKVTldITNEKYIFDFTGT 1030
                      *************************************************99999999889**********999888875588888******** PP

  Hydantoinase_B  263 spqvkgniNaplavtlsaviyvlrclvdediplNeGclrpievklpegsllnpsepaavvggnvetsqrvvdvvlkalaqalpervaAasqgt 355 
                      spq++gn+Nap+a+t+sa++y+lrclv++diplN+Gcl+pi++k+p+gs+l+p+ +aavvggnv+tsqrv+dv+lk l+      ++A sqg+
      CCD24391.1 1031 SPQIYGNTNAPKAITYSAILYCLRCLVGKDIPLNQGCLDPITIKIPDGSILSPNTNAAVVGGNVLTSQRVTDVILKTLN------IQADSQGD 1117
                      *******************************************************************************......******** PP

  Hydantoinase_B  356 mnnltfggvderg......geffgyyetiagGaGAr......pgkdGasavhvhmtntrntdvEilErryPvlverfelrpdsgGaGkyrGGd 436 
                      +nn+tfg  + ++       + fgyyeti+gG+GA+      +g++G++avh++mtntr+td+E++ErryPv++++f++r++sgG Gk+ GG+
      CCD24391.1 1118 CNNFTFGTSSFKDpqtnetFSGFGYYETICGGSGAGcdswesKGWNGTDAVHTNMTNTRMTDTEVFERRYPVILREFSIRQGSGGLGKFTGGN 1210
                      ******98777668999995667************8788888*************************************************** PP

  Hydantoinase_B  437 GvvreieflepevtvsilserrvfapwGlaGGepGargrvvlnllvr...geeenlggkatvelkagdvlvietpGGGGyGd 515 
                      Gv+r+ief+++ vt s+lserrv+ap Gl+GG++G+rg+   n+++r   ++++n+ggk+t+  k+ d+l+i+tpGGGGyG+
      CCD24391.1 1211 GVIRDIEFRQE-VTTSVLSERRVTAPHGLKGGQDGKRGE---NIWIRgdkETVVNIGGKNTIIAKPKDRLIIKTPGGGGYGK 1288
                      **********7.***************************...99*9999999*****************************7 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.36   1.3e+03      82      95 ..      14      27 ..       7      38 .. 0.83
   2 !  336.5   0.0  3.5e-104  1.3e-100       1     290 [.     249     542 ..     249     543 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.36
  Hydantoinase_A 82 ItfDmGGTstDvsl 95
                    I +D GGT tDv+ 
      CCD24391.1 14 ISIDRGGTFTDVIG 27
                    999********985 PP

  == domain 2  score: 336.5 bits;  conditional E-value: 3.5e-104
  Hydantoinase_A   1 rtetavvnAylspilreylesvekslekrgakarlmvmqsdGglvsadearkkpvetilSGPaaGvvgaaat.sklagekkvItfDmGGTstDvs 94 
                     r++++v +Ayl+p++++yl+s++k l +++ ++ +++mqsdGglv+ +++++   + ilSGPa+Gvvg+++t  +++ + ++I+fDmGGTstDvs
      CCD24391.1 249 RAHSSVADAYLTPVIKSYLDSISKGLVNSE-NTSIQFMQSDGGLVEGEKFSGL--KSILSGPAGGVVGYSRTcFDRKSKVPLIGFDMGGTSTDVS 340
                     7889************************86.69*******************9..*****************98999999*************** PP

  Hydantoinase_A  95 likdgevevsleteiagvkvrlpaldirtvgagGgsilvvdeggklrvgpesagadpgpacyrkGgteltvTDanlvLGrlqpedfls..gpdgd 187
                     ++ dg+ e+++et++ag+ +++p+ldi+tv+agG sil ++e+g ++vgp sa adpgp +yrk g +lt+TDanlvLGrl p++f+   gp++d
      CCD24391.1 341 RFGDGKLEHVFETTTAGIIIQSPQLDIHTVAAGGSSIL-TWENGLFKVGPGSAAADPGPSAYRKNG-PLTITDANLVLGRLVPQFFPNifGPNED 433
                     **************************************.***************************.**************************** PP

  Hydantoinase_A 188 qkldvelarrafeelakelnlk......veevAegilsvavenmanavrklsvergldpkeltlvvfGGaGaqhaaalaeelgvkkvivppyagv 276
                     q+ld e+ +++f+ela ++n++       eevA+g+++va+e ma+++r +++++g+ +++++lv fGGaG+qha a+ae+lg+++vi+++y++v
      CCD24391.1 434 QPLDLETPTKKFNELALKINKDlnlemtSEEVAYGFIEVANESMARPIRAITEAKGYSVSKHNLVTFGGAGGQHAVAVAESLGISTVIAHRYSSV 528
                     *********************************************************************************************** PP

  Hydantoinase_A 277 lsalGmalAdvree 290
                     lsa+G+ lAdv ee
      CCD24391.1 529 LSAYGIYLADVVEE 542
                     ***********986 PP

>> Hydant_A_N  Hydantoinase/oxoprolinase N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.4   0.0   1.2e-59   4.4e-56       1     178 []      13     230 ..      13     230 .. 0.98
   2 ?    3.8   0.3     0.012        42       2      28 ..     328     353 ..     327     370 .. 0.78

  Alignments for each domain:
  == domain 1  score: 189.4 bits;  conditional E-value: 1.2e-59
  Hydant_A_N   1 rigIDvGGTfTDavaldeke..eevavlKllst.....pdavaegirealeevleesipr.....tskidvvrmGTTvatNallerkgervaLittkgf 87 
                 ri ID+GGTfTD++  ++    e  +++Klls+     pda+ egir++le  ++++ipr      s+++++rmGTT+atN  lerkger+a+ittkgf
  CCD24391.1  13 RISIDRGGTFTDVIGNKGSGkqEDDVIFKLLSVdpknyPDAPLEGIRRILEIFEHKKIPRgmpldISNVASIRMGTTLATNSALERKGERCAFITTKGF 111
                 799*************9877778899************************************************************************* PP

  Hydant_A_N  88 rdlleigrqnrpdlfelrikkplvlyeevvevdervead............................gevlkpldeeevrealkalkaagvesiavvll 158
                 +d+l ig+q+rp++fel+ikk   lye+vve+derv+++                            +++lk+ +e  v+++l++++++g++si +++l
  CCD24391.1 112 KDALLIGDQTRPKIFELNIKKSKPLYETVVEIDERVTLEdfteqspfkkssvhagdnnlvlgesgeiVRILKKPNEVDVKKILNSIYNTGIRSIGIAFL 210
                 **************************************99*********************************************************** PP

  Hydant_A_N 159 hSylnpehElrvaeiareig 178
                 hSy++p+hE+ v++ia+e+g
  CCD24391.1 211 HSYTYPNHEKLVGRIAKEVG 230
                 *****************985 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.012
  Hydant_A_N   2 igIDvGGTfTDavaldekeeevavlKl 28 
                 ig D+GGT TD+  + ++ +  +v+ +
  CCD24391.1 328 IGFDMGGTSTDVSRFGDG-KLEHVFET 353
                 799********9877755.55555555 PP

>> DUF2482  Hypothetical protein of unknown function (DUF2482)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   9.2e-05      0.33       5      83 ..     119     198 ..     117     205 .. 0.74
   2 ?   -3.9   0.1         5   1.8e+04      63      88 ..     952     977 ..     940     982 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.2e-05
     DUF2482   5 dmtqeeikdllaeKskeLyelieeikeetdFdill....fsaigvsdgdaqvsssslvvGkivglanlLkneee..fkdivnviq 83 
                 d t+ +i +l  +Ksk Lye++ ei+e    + +     f + +v+ gd     ++lv+G++ +++ +Lk+ +e   k+i n+i 
  CCD24391.1 119 DQTRPKIFELNIKKSKPLYETVVEIDERVTLEDFTeqspFKKSSVHAGD-----NNLVLGESGEIVRILKKPNEvdVKKILNSIY 198
                 66888999999****************9876654310114444666666.....99*************9766511677888775 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 5
     DUF2482  63 vglanlLkneeefkdivnviqaiklk 88 
                 ++l   L++e ++  i + +qai+l+
  CCD24391.1 952 IQLIAALVKEFKYPVILKYMQAIQLN 977
                 66667788899999999999988875 PP

>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2   0.00082       2.9      12      51 ..     166     202 ..     160     208 .. 0.84
   2 ?   -2.6   0.1       2.5     9e+03       4      34 ..     489     517 ..     488     521 .. 0.81
   3 ?   -3.4   0.0       4.7   1.7e+04      19      40 ..    1058    1077 ..    1056    1081 .. 0.76
   4 ?    1.1   0.0      0.17   6.3e+02      23      67 ..    1229    1270 ..    1227    1283 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00082
                   TTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSES CS
  Ribosomal_L6  12 gqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgi 51 
                   g ++lvlG++ge+ r +++  +v+vk   + ++ i  +gi
    CCD24391.1 166 GDNNLVLGESGEIVRILKKPNEVDVK---KILNSIYNTGI 202
                   5789********************99...56777777776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.5
                   TEEEEEETTTEEEEEESSEEEEEE-CTTSEE CS
  Ribosomal_L6   4 gvrvsikggqlvlvlGpkgeltreipegvtv 34 
                   g++vs    +lv++ G  g+  + + e + +
    CCD24391.1 489 GYSVSKH--NLVTFGGAGGQHAVAVAESLGI 517
                   8888888..8****99999988888877766 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.7
                    ESSEEEEEE-CTTSEEEEEECS CS
  Ribosomal_L6   19 Gpkgeltreipegvtvevkveg 40  
                    G+  +l++ + + +t++++  +
    CCD24391.1 1058 GKDIPLNQGCLDPITIKIP--D 1077
                    7777888888999999988..4 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.17
                    EEEEE-CTTSEEEEEECSTEEEEEECSESCHHHHHHHHHHHHHHH CS
  Ribosomal_L6   23 eltreipegvtvevkvegnkvtvivvsgidkekvAligtvrslin 67  
                    e++++ p+g++    ++g+ ++ i + g++++ v +ig   ++i+
    CCD24391.1 1229 ERRVTAPHGLKGG--QDGKRGENIWIRGDKETVV-NIGGKNTIIA 1270
                    6788888887777..8888888888899999999.9987777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.47
# Mc/sec: 8284.55
//
Query:       CCD24392.1  [L=420]
Description: hypothetical protein NDAI_0D00780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2285  (0.127447); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 2967.06
//
Query:       CCD24393.1  [L=401]
Description: hypothetical protein NDAI_0D00790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-50  168.3   0.0    9.4e-50  167.6   0.0    1.4  1  Ribo_biogen_C  Ribosome biogenesis protein, C-terminal
    5.3e-14   51.7   0.3    1.1e-13   50.8   0.3    1.5  1  RLI            Possible Fer4-like domain in RNase L inhibitor
  ------ inclusion threshold ------
       0.21   12.1   0.9         27    5.4   0.0    3.2  3  RHS_repeat     RHS Repeat


Domain annotation for each model (and alignments):
>> Ribo_biogen_C  Ribosome biogenesis protein, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.6   0.0   1.6e-53   9.4e-50       1     127 []     148     278 ..     148     278 .. 0.96

  Alignments for each domain:
  == domain 1  score: 167.6 bits;  conditional E-value: 1.6e-53
                    EEE-TT-SSB--GGGHHHHHHT-EEEE---TTT--GGGTTT-....E....EB--S-B--STTTTT-BS---HHHHHHHHHHHTT-HHHHHHHHTS CS
  Ribo_biogen_C   1 ivlspkakkvlspaDreiveksgiavvdcsWarleevkfkkl....kakeerlLPyLvAaNpvnYgkplkLscvEAlaaalyilglkeeaeellsk 92 
                    +++sp++kkv+sp+D++i+++ g avv+csWarl+e++f+kl     +k+erlLPyLvAaN vnYg+p+kL+cvEAlaa+++i+g +++a++lls+
     CCD24393.1 148 LIISPNGKKVVSPDDADIIKEFGAAVVECSWARLDEIPFSKLnggnGGKNERLLPYLVAANQVNYGRPWKLNCVEALAACFAIIGRSDWASDLLSN 243
                    689**************************************95554445*********************************************** PP

                    STTHHHHHHHCHHHHHHH.TT--HHHHHHHHHHHH CS
  Ribo_biogen_C  93 fkwgeeFlelnkelleeYakckdseevvevqkeyl 127
                    f+wg +Fl+ln+el+e Y+kc+ds++v+++q+e+l
     CCD24393.1 244 FSWGLNFLKLNEELFELYSKCTDSDSVKAAQEEWL 278
                    ********************************996 PP

>> RLI  Possible Fer4-like domain in RNase L inhibitor, RLI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.3   1.8e-17   1.1e-13       2      35 .]     111     144 ..     110     144 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 1.8e-17
                 -EEEES---------TTHHHHHTTSEEEESS--S CS
         RLI   2 rlAivdadqCdPKKCtgkkcarfcpvrlvrtgkk 35 
                 +l ++d+d+CdPK+C+gkk++r+++++ +++g++
  CCD24393.1 111 KLGMWDFDHCDPKRCSGKKLERLGLIKSLKIGQR 144
                 677*****************************95 PP

>> RHS_repeat  RHS Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       1.5   9.3e+03      29      37 ..      26      34 ..      23      35 .. 0.72
   2 ?    5.4   0.0    0.0045        27      20      34 ..     342     356 ..     332     359 .. 0.82
   3 ?    3.5   0.0     0.018   1.1e+02      19      28 ..     390     399 ..     368     401 .] 0.57

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
  RHS_repeat 29 ttlTdpdGr 37
                +t T++dG+
  CCD24393.1 26 QTKTRGDGT 34
                778999997 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0045
  RHS_repeat  20 YtYDaqGrlttlTdp 34 
                 ++YD +G++ + Td 
  CCD24393.1 342 LRYDNLGNVIEDTDE 356
                 79*******998886 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.018
  RHS_repeat  19 tYtYDaqGrl 28 
                  ++YD++G++
  CCD24393.1 390 ELRYDSLGNI 399
                 5899999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1206  (0.0672653); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2938.31
//
Query:       CCD24394.1  [L=1193]
Description: hypothetical protein NDAI_0D00800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-09   35.6   1.3    2.6e-08   34.0   1.3    1.9  1  VPS9      Vacuolar sorting protein 9 (VPS9) domain
    1.4e-05   25.6   5.2       0.13   12.9   0.3    3.8  3  Ank_2     Ankyrin repeats (3 copies)
  ------ inclusion threshold ------
      0.017   15.4   0.0       0.97    9.8   0.0    3.5  3  Ank_5     Ankyrin repeats (many copies)
       0.11   13.2   1.1        5.7    7.9   0.0    4.2  5  Ank_3     Ankyrin repeat


Domain annotation for each model (and alignments):
>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   1.3   5.9e-12   2.6e-08       4     102 ..     335     444 ..     332     445 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 5.9e-12
        VPS9   4 aseeLkklseaksPreKlkcllrtieeiteav.......skseegeslgaDdlLPiliyviiksspp..nlysnvqfikrFr..sktllegeegYyltt 91 
                  + ++ kl+++ks +eK  +l+++ ++it++         k+++g+ ++aD+lL++l++vi++s++   +l +n++++k F   +++   g  +Y  +t
  CCD24394.1 335 SVTCINKLKSTKSYTEKSTILIESLQIITDSNtggeeskDKNKSGYLIDADNLLNLLTLVILQSNITlhDLKANLYYLKYFStdESSSSFGILNYTIAT 433
                 678999*************************99****99999999*******************986669***********853445555799999999 PP

        VPS9  92 leaavefiesl 102
                 ++ +   +e++
  CCD24394.1 434 FHMVSHVLENV 444
                 99999988875 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.3   2.9e-05      0.13      24      74 ..     483     549 ..     451     559 .. 0.73
   2 ?    3.0   0.0     0.034   1.5e+02      19      60 ..     567     609 ..     547     631 .. 0.58
   3 !   10.1   0.4   0.00021      0.94      14      74 ..     639     705 ..     616     713 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
       Ank_2  24 k...ngktaLhyAakng.nleivklLleh.........ad...ndgrtpLhyAarsghleivklLle 74 
                     ng++ L ++++n  n+++ ++L+e+          +    d  t L  A+rs+++e++ +L++
  CCD24394.1 483 YrnsNGESLLALSIINKqNKKFTQYLIEYedilnmdiiSNdqsMDSSTLLLQAIRSNNFEAAIILVK 549
                 1334999****99998625589******7788775565224555688***************99984 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.034
       Ank_2  19 gadpnkngktaLhyAakngnl.eivklLle.h.adndgrtpLhyA 60 
                  +d++  ++++ hy ++n  + +i+  +++ +  d +grtpL+  
  CCD24394.1 567 QVDIH--NRNIGHYLVINLTIlKIIGQFINwKqKDVNGRTPLFTI 609
                 34443..67888877777522255555554425567788888754 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00021
       Ank_2  14 klLlegadpnk.ngktaLhyAakngnleivklLleh............adndgrtpLhyAarsghleivklLle 74 
                 k+ +  +d ++ ng++ Lh+  +n+    +++Ll++            ++++g tpL++  ++++++ +++ ++
  CCD24394.1 639 KFQM--NDHDDsNGNSLLHIL-QNN----ISILLDYakdqnipinlnkMNCKGFTPLMMYFKYKRYDNIRMIIK 705
                 2222..333335999999966.443....88999855565777665455599******9999999999998883 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.2   8.9e+02      12      36 ..     524     548 ..     515     556 .. 0.81
   2 ?   -1.9   0.0         1   4.6e+03      41      53 ..     594     606 ..     593     606 .. 0.91
   3 ?    9.8   0.0   0.00022      0.97       6      36 ..     674     704 ..     670     712 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.2
       Ank_5  12 ldgggntpLhvAakygaadvvrlLl 36 
                 +  ++ t L +A++ ++++ +++L+
  CCD24394.1 524 QSMDSSTLLLQAIRSNNFEAAIILV 548
                 4455669999*************98 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1
       Ank_5  41 dlnltdsrGltal 53 
                 +++++d +G+t+l
  CCD24394.1 594 NWKQKDVNGRTPL 606
                 7999*******98 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00022
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLl 36 
                 p+++n  + +g+tpL++  ky + d +r+++
  CCD24394.1 674 PINLNKMNCKGFTPLMMYFKYKRYDNIRMII 704
                 7788888889*******************99 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.7   1.2e+04       1      23 [.     487     510 ..     487     515 .. 0.76
   2 ?    7.9   0.0    0.0013       5.7       4      24 ..     530     554 ..     527     557 .. 0.76
   3 ?   -2.7   0.0       3.4   1.5e+04       1       7 [.     601     607 ..     601     609 .. 0.86
   4 ?    0.1   0.1      0.43   1.9e+03       1      30 [.     649     676 ..     649     677 .. 0.59
   5 ?   -2.3   0.0       2.5   1.1e+04       2      22 ..     684     704 ..     683     707 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.7
       Ank_3   1 nGetpLhlAarsgnle.ivkfLle 23 
                 nGe++L l + +   +   ++L+e
  CCD24394.1 487 NGESLLALSIINKQNKkFTQYLIE 510
                 688888888888877657889998 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0013
       Ank_3   4 tpLhlAarsgnle..i..vkfLlen 24 
                 t+L +A+rs+n+e  i  vk+L++n
  CCD24394.1 530 TLLLQAIRSNNFEaaIilVKLLFQN 554
                 9***********8442448777775 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.4
       Ank_3   1 nGetpLh 7  
                 nG+tpL+
  CCD24394.1 601 NGRTPLF 607
                 7*****8 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.43
       Ank_3   1 nGetpLhlAarsgnle.ivkfLlenkgadvn 30 
                 nG+++Lh+  +++n++ ++++  +  ++++n
  CCD24394.1 649 NGNSLLHI--LQNNISiLLDYAKD-QNIPIN 676
                 79999995..44444323666655.566655 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 2.5
       Ank_3   2 GetpLhlAarsgnleivkfLl 22 
                 G tpL++  ++ +++ +++++
  CCD24394.1 684 GFTPLMMYFKYKRYDNIRMII 704
                 889999877777775466666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1061  (0.0591779); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 8328.61
//
Query:       CCD24395.1  [L=349]
Description: hypothetical protein NDAI_0D00810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-22   77.6   0.8    4.4e-22   77.6   0.8    2.7  2  SGTA_dimer  Homodimerisation domain of SGTA
    3.7e-20   70.9   7.0    3.3e-07   29.8   0.3    4.3  4  TPR_1       Tetratricopeptide repeat
    9.8e-17   59.7   5.6    7.4e-05   22.6   0.3    4.1  4  TPR_2       Tetratricopeptide repeat
      2e-14   53.0   5.5    0.00062   19.4   0.5    3.6  3  TPR_11      TPR repeat
    6.8e-09   35.2  12.2    0.00041   20.3   0.6    4.3  4  TPR_8       Tetratricopeptide repeat
    7.9e-08   32.2   0.5     0.0034   17.7   0.1    3.6  3  TPR_17      Tetratricopeptide repeat
    7.8e-07   29.3   2.4      0.023   15.0   0.1    3.1  3  TPR_12      Tetratricopeptide repeat
    3.8e-06   26.9   1.1       0.11   12.5   0.0    3.6  3  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
    8.4e-06   26.2   0.1       0.19   12.6   0.1    3.3  3  TPR_14      Tetratricopeptide repeat
    1.7e-05   25.4   0.1     0.0016   19.0   0.0    2.4  2  TPR_16      Tetratricopeptide repeat
    2.2e-05   24.2   1.2       0.27   11.1   0.1    3.4  3  TPR_10      Tetratricopeptide repeat
    2.4e-05   24.8   0.3     0.0028   18.1   0.0    2.9  2  TPR_19      Tetratricopeptide repeat
    0.00019   21.9   0.0     0.0012   19.3   0.0    2.2  3  BTAD        Bacterial transcriptional activator domain
    0.00054   19.8   0.3        2.6    8.3   0.1    3.6  3  TPR_7       Tetratricopeptide repeat
     0.0048   16.8  12.9       0.17   11.9   2.0    2.6  2  STI1        STI1 domain
      0.006   16.5   2.7      0.058   13.4   2.4    2.6  1  GerD        Spore germination GerD central core domain
     0.0099   16.5   0.5        2.2    9.1   0.0    3.5  3  TPR_6       Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.037   14.2   0.0       0.12   12.5   0.0    1.9  1  TPR_9       Tetratricopeptide repeat
       0.06   13.4   5.3        6.3    6.9   0.2    3.6  3  DUF3856     Domain of Unknown Function (DUF3856)
       0.14   12.4   2.6        1.2    9.4   2.0    2.2  2  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
        4.2    7.5   9.2         49    4.1   0.3    4.2  4  MIT         MIT (microtubule interacting and transport) domai


Domain annotation for each model (and alignments):
>> SGTA_dimer  Homodimerisation domain of SGTA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.8   5.2e-25   4.4e-22       1      66 [.       4      69 ..       4      70 .. 0.98
   2 ?    0.5   0.2       0.6   5.1e+02      17      34 ..      73      90 ..      70     120 .. 0.66

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 5.2e-25
  SGTA_dimer  1 skkrlalaIidFLstslkdgtvseDdaESleVAiqCIaeaFevdkedkaavkkakfggqsLleile 66
                ++k++ ++I+dFLst +++++vseD+a+Sl+VA++CI+ea e+d+e   +++k+kf+g++L++il+
  CCD24395.1  4 NNKDIGALIVDFLSTIIEKNEVSEDNADSLNVAMDCISEALEFDREVVPETIKNKFNGKTLVDILN 69
                79**************************************************************97 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.6
  SGTA_dimer 17 lkdgtvseDdaESleVAi 34
                +++ + + +++ES+eV i
  CCD24395.1 73 TATANTTIEKEESVEVNI 90
                555566667788888865 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.58     5e+02      20      32 ..      36      48 ..      36      49 .. 0.88
   2 !   16.3   0.0   7.5e-06    0.0064       1      34 []     101     134 ..     101     134 .. 0.96
   3 !   29.8   0.3   3.9e-10   3.3e-07       2      34 .]     136     168 ..     135     168 .. 0.95
   4 !   25.0   0.1   1.3e-08   1.1e-05       2      34 .]     170     202 ..     169     202 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.58
                HHHHHHHHHHHST CS
       TPR_1 20 AleyyekALelnP 32
                A ++ ++ALe + 
  CCD24395.1 36 AMDCISEALEFDR 48
                899*******986 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 7.5e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a+a++  Gn  + ++++  A+e y +A+++ P+n
  CCD24395.1 101 AEAFKLEGNKAMAMKDFHLAVEKYTEAIKILPTN 134
                 7899999*************************97 PP

  == domain 3  score: 29.8 bits;  conditional E-value: 3.9e-10
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                   + n+++a+ +l++++eA+++ e A++++P++
  CCD24395.1 136 IYYANRAAAHSSLKEFEEAIKDAESAIKIDPSY 168
                 6799***************************97 PP

  == domain 4  score: 25.0 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 k + +l+ a + lgk++eAle y+k+L ++ +n
  CCD24395.1 170 KGYSRLAFAKYGLGKHEEALESYKKVLDIEGDN 202
                 78**************************98765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       3.9   3.4e+03      20      31 ..      36      47 ..      32      49 .. 0.83
   2 !   16.5   0.0   7.5e-06    0.0064       1      34 []     101     134 ..     101     134 .. 0.95
   3 !   22.6   0.3   8.6e-08   7.4e-05       1      33 [.     135     167 ..     135     168 .. 0.95
   4 !   20.5   0.1   3.9e-07   0.00033       2      34 .]     170     202 ..     169     202 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 3.9
       TPR_2 20 AleafekAleld 31
                A ++  +Ale d
  CCD24395.1 36 AMDCISEALEFD 47
                889999999987 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 7.5e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPnn 34 
                 aea    G+ +++++d+  A+e + +A+++ P+n
  CCD24395.1 101 AEAFKLEGNKAMAMKDFHLAVEKYTEAIKILPTN 134
                 7899999*************************97 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 8.6e-08
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a ++ n++ a+  l+++eeA+++ e A+++dP 
  CCD24395.1 135 AIYYANRAAAHSSLKEFEEAIKDAESAIKIDPS 167
                 6799****************************7 PP

  == domain 4  score: 20.5 bits;  conditional E-value: 3.9e-07
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +++ +l+ a y lg++eeAle ++k+l ++ +n
  CCD24395.1 170 KGYSRLAFAKYGLGKHEEALESYKKVLDIEGDN 202
                 6799***********************998765 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.5   7.2e-07   0.00062       5      38 ..     112     145 ..     108     149 .. 0.85
   2 !   18.8   0.1   1.1e-06   0.00092       7      42 .]     148     183 ..     146     183 .. 0.94
   3 !   18.8   0.2   1.1e-06   0.00094       5      30 ..     180     205 ..     178     205 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 7.2e-07
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                 ++  ++  A+e+Y +A+k+ P+na  y n+++a+
  CCD24395.1 112 MAMKDFHLAVEKYTEAIKILPTNAIYYANRAAAH 145
                 56667778************************98 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.1e-06
      TPR_11   7 qGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42 
                 + ++eeAi++ + A+k+dP++   y+ L++a y +G
  CCD24395.1 148 LKEFEEAIKDAESAIKIDPSYSKGYSRLAFAKYGLG 183
                 5699****************************9988 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 1.1e-06
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdnaea 30 
                 y +Gk eeA+e+Ykk l++  dna+a
  CCD24395.1 180 YGLGKHEEALESYKKVLDIEGDNATA 205
                 568********************987 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       4.6     4e+03      19      32 ..      35      48 ..      30      49 .. 0.83
   2 ?    3.4   0.0      0.13   1.1e+02      12      30 ..     112     130 ..     107     134 .. 0.86
   3 !   20.3   0.6   4.8e-07   0.00041       3      33 ..     137     167 ..     135     168 .. 0.95
   4 !   17.4   0.2   4.2e-06    0.0036       3      33 ..     171     201 ..     169     202 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 4.6
                HHHHHHHHHHHHHH CS
       TPR_8 19 eAkeyyekaleldp 32
                 A+ ++ +ale d+
  CCD24395.1 35 VAMDCISEALEFDR 48
                5999999***9987 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.13
                 HHTT-HHHHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekalel 30 
                 + ++d++ A+e y +a+++
  CCD24395.1 112 MAMKDFHLAVEKYTEAIKI 130
                 579999*****9***9998 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 4.8e-07
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +y n + ++++l+++eeA++  e a+++dp+
  CCD24395.1 137 YYANRAAAHSSLKEFEEAIKDAESAIKIDPS 167
                 799***************************7 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 4.2e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                  y +l+ +   lg++eeA e+y+k+l+++ d
  CCD24395.1 171 GYSRLAFAKYGLGKHEEALESYKKVLDIEGD 201
                 688999999******************9876 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1     4e-06    0.0034       2      34 .]     124     156 ..     123     156 .. 0.96
   2 !   10.3   0.0   0.00088      0.75       4      34 .]     160     190 ..     158     190 .. 0.93
   3 ?   -1.1   0.0       3.8   3.3e+03       2      14 ..     192     204 ..     191     205 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4e-06
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 y++a+++ P+na  y n+A ++++++++++A++
  CCD24395.1 124 YTEAIKILPTNAIYYANRAAAHSSLKEFEEAIK 156
                 99****************************985 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00088
      TPR_17   4 kaleldPnnadaynnLAelllknGdlmtArq 34 
                  a+++dP++++ y  LA + + +G++++A++
  CCD24395.1 160 SAIKIDPSYSKGYSRLAFAKYGLGKHEEALE 190
                 59*************************9975 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.8
      TPR_17   2 ylkaleldPnnad 14 
                 y+k+l+++ +na 
  CCD24395.1 192 YKKVLDIEGDNAT 204
                 99*****999996 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.3   0.00013      0.11      14      76 ..     112     166 ..     108     167 .. 0.89
   2 !   15.0   0.1   2.7e-05     0.023       6      32 ..     172     198 ..     167     205 .. 0.83
   3 ?   -2.6   0.0       8.2     7e+03      60      73 ..     210     223 ..     207     227 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00013
      TPR_12  14 rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 +++++++ A e + +a+ i      p++   a+++ n + +++ l+++eeA++  e a++i++
  CCD24395.1 112 MAMKDFHLAVEKYTEAIKIL-----PTN---AIYYANRAAAHSSLKEFEEAIKDAESAIKIDP 166
                 57899999999999999999.....876...99*************************99975 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 2.7e-05
      TPR_12   6 lnnlaavlrrlgrydeAlellekalei 32 
                 +++la + + lg+++eAle ++k+l+i
  CCD24395.1 172 YSRLAFAKYGLGKHEEALESYKKVLDI 198
                 678999999999999999999999987 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 8.2
      TPR_12  60 ryeeAlelleeala 73 
                 +ye A ++ ee+++
  CCD24395.1 210 DYETAKKRVEESMN 223
                 45555555555543 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0051       4.4       4      33 ..     136     167 ..     133     170 .. 0.85
   2 !   12.5   0.0   0.00013      0.11       7      35 ..     175     203 ..     174     207 .. 0.93
   3 ?    3.4   0.0     0.094        80      15      31 ..     209     225 ..     208     234 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0051
                 HHH..HHHHHHHHT-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C   4 lYy..lAlGhyklgeYseArryvdalLeiEPe 33 
                 +Yy   A +h  l+e++eA + ++  ++i+P+
  CCD24395.1 136 IYYanRAAAHSSLKEFEEAIKDAESAIKIDPS 167
                 66633599***********************7 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00013
                 HHHHHHHHT-HHHHHHHHHHHHHHTTS-H CS
  Fis1_TPR_C   7 lAlGhyklgeYseArryvdalLeiEPenr 35 
                 lA+++y lg+++eA++  + +L iE +n 
  CCD24395.1 175 LAFAKYGLGKHEEALESYKKVLDIEGDNA 203
                 8************************9996 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.094
                 T-HHHHHHHHHHHHHHT CS
  Fis1_TPR_C  15 geYseArryvdalLeiE 31 
                 ++Y++A++ v+  +++E
  CCD24395.1 209 RDYETAKKRVEESMNVE 225
                 69*********999998 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.82     7e+02      12      37 ..     112     137 ..     102     142 .. 0.76
   2 !   12.6   0.1   0.00023      0.19       6      43 ..     140     177 ..     135     178 .. 0.90
   3 !   10.6   0.0   0.00099      0.84       4      37 ..     172     205 ..     169     207 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.82
      TPR_14  12 lalGdpdeAiallrralalaPddaea 37 
                 +a  d+  A++ + +a++  P++a +
  CCD24395.1 112 MAMKDFHLAVEKYTEAIKILPTNAIY 137
                 56677888888888888888888755 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00023
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                  +a+a+  l +++eAi+ ++ a++ +P+    + +la+
  CCD24395.1 140 NRAAAHSSLKEFEEAIKDAESAIKIDPSYSKGYSRLAF 177
                 6899************************9999888886 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00099
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaea 37 
                 + +la a + lG+++eA++ ++++l+   d+a+a
  CCD24395.1 172 YSRLAFAKYGLGKHEEALESYKKVLDIEGDNATA 205
                 5678899999********************9986 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.9e-06    0.0016       4      67 ..     108     168 ..     106     169 .. 0.93
   2 ?    3.9   0.0       0.1        89       6      32 ..     178     201 ..     173     207 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.9e-06
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapda 67 
                 ++ a++ +d+  A++ +++a+k     P +a  + +++ a+  +++++eA+   ++a++ +p++
  CCD24395.1 108 GNKAMAMKDFHLAVEKYTEAIKIL---PTNAIYYANRAAAHSSLKEFEEAIKDAESAIKIDPSY 168
                 6778999*****************...************************8888889999975 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.1
      TPR_16   6 aalragdyddAaaaleaalkrdpssPd 32 
                 a + +g+ ++A++ ++ +l+      d
  CCD24395.1 178 AKYGLGKHEEALESYKKVLDIE---GD 201
                 5678899999999999999877...44 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       2.4   2.1e+03      17      35 ..     109     127 ..     107     131 .. 0.67
   2 !   11.1   0.1   0.00032      0.27       5      31 ..     138     164 ..     135     164 .. 0.91
   3 !    9.7   0.0   0.00091      0.78       5      31 ..     172     198 ..     172     199 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.4
      TPR_10  17 rydeAealleealairrrl 35 
                 + + A+++++ a++ + ++
  CCD24395.1 109 NKAMAMKDFHLAVEKYTEA 127
                 5666777777777777665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00032
      TPR_10   5 lnNLanalrqrgrydeAealleealai 31 
                 + N a+a++++++++eA +++e a+ i
  CCD24395.1 138 YANRAAAHSSLKEFEEAIKDAESAIKI 164
                 8899********************976 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.00091
      TPR_10   5 lnNLanalrqrgrydeAealleealai 31 
                 ++ La a + +g+++eA++ ++++l+i
  CCD24395.1 172 YSRLAFAKYGLGKHEEALESYKKVLDI 198
                 57799******************9986 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1    0.0015       1.3       1      46 [.     111     156 ..     111     156 .. 0.96
   2 !   18.1   0.0   3.3e-06    0.0028       6      59 ..     150     203 ..     148     211 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0015
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAea 46 
                 ++a++d+  A++ +++a++  p na   ++ A a+ +l++++eA++
  CCD24395.1 111 AMAMKDFHLAVEKYTEAIKILPTNAIYYANRAAAHSSLKEFEEAIK 156
                 689*****************************************85 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 3.3e-06
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdda 59 
                  ++eA++  e+a++ dp ++    +LA a + lg  +eA +  +++++ + d+a
  CCD24395.1 150 EFEEAIKDAESAIKIDPSYSKGYSRLAFAKYGLGKHEEALESYKKVLDIEGDNA 203
                 689*********************************************999965 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         6   5.1e+03      18      45 ..      29      56 ..      21      86 .. 0.72
   2 ?   -1.9   0.0       4.9   4.2e+03      10      33 ..     105     128 ..      92     132 .. 0.65
   3 !   19.3   0.0   1.4e-06    0.0012      66     122 ..     139     195 ..     135     210 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 6
                HTT-HHHHHHHHHHHHTT--SSTTGGGT CS
        BTAD 18 aagdpeeaaelleaAlalwrGpaladle 45
                +a+  + a++++++Al++ r+ + + ++
  CCD24395.1 29 NADSLNVAMDCISEALEFDREVVPETIK 56
                5667777888888888887777766655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 4.9
                 HHHHHHHHHTT-HHHHHHHHHHHH CS
        BTAD  10 vaagraalaagdpeeaaelleaAl 33 
                 + +g++a a  d++ a+e++ +A+
  CCD24395.1 105 KLEGNKAMAMKDFHLAVEKYTEAI 128
                 445666666666666666666665 PP

  == domain 3  score: 19.3 bits;  conditional E-value: 1.4e-06
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH CS
        BTAD  66 ealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerl 122
                 + +a+a+++l + eea++++e++++ +P   + +  l  A + +G+ +eALe Y+++
  CCD24395.1 139 ANRAAAHSSLKEFEEAIKDAESAIKIDPSYSKGYSRLAFAKYGLGKHEEALESYKKV 195
                 679999************************************************987 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.95   8.2e+02      14      28 ..     116     128 ..     112     133 .. 0.63
   2 ?    6.3   0.0     0.013        11       2      21 ..     138     157 ..     138     168 .. 0.81
   3 !    8.3   0.1    0.0031       2.6      12      29 ..     182     199 ..     173     228 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.95
       TPR_7  14 dyeeAielyeqsLal 28 
                 d+  A+e y++  a+
  CCD24395.1 116 DFHLAVEKYTE--AI 128
                 56666666666..32 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
       TPR_7   2 LlnLarlysrlGdyeeAiel 21 
                 + n a ++s+l ++eeAi+ 
  CCD24395.1 138 YANRAAAHSSLKEFEEAIKD 157
                 67899*************85 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0031
       TPR_7  12 lGdyeeAielyeqsLalt 29 
                 lG++eeA+e y+++L ++
  CCD24395.1 182 LGKHEEALESYKKVLDIE 199
                 8************88776 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   2.0   0.00019      0.17      17      41 ..     274     298 ..     271     299 .. 0.92
   2 !   10.2   5.7   0.00065      0.55      13      48 ..     296     331 ..     295     337 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00019
        STI1  17 llsDPefvakleeiqsNPqalqqym 41 
                 lls+P+f++  ++++s+P+a+qq +
  CCD24395.1 274 LLSNPDFMSTAQKLMSDPNAMQQVQ 298
                 89********************975 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00065
        STI1  13 etrellsDPefvakleeiqsNPqalqqymsDprimt 48 
                 +++ ++sDP+++   + ++++ + ++  m++p i +
  CCD24395.1 296 QVQSMMSDPSMRDLANNFKNGNTDMNDIMNNPAIRN 331
                 79******************************9976 PP

>> GerD  Spore germination GerD central core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   2.4   6.7e-05     0.058      52     109 ..     273     336 ..     271     340 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.7e-05
        GerD  52 dLmkDpeYqkmlleilkdpemekqllellkskeyr......kqlekviqetlesPlfkaklqel 109
                 +L+++p++ +   +++ dp+ ++q+++++  +++r      k+ ++ +++ +++P +++  ++l
  CCD24395.1 273 SLLSNPDFMSTAQKLMSDPNAMQQVQSMMSDPSMRdlannfKNGNTDMNDIMNNPAIRNMASNL 336
                 6899999999999999999999999999999999933322223345688999999888776665 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.96   8.2e+02      13      28 ..     114     129 ..     101     134 .. 0.55
   2 ?    2.1   0.0      0.44   3.7e+02       6      31 ..     141     166 ..     138     168 .. 0.84
   3 !    9.1   0.0    0.0026       2.2       5      28 ..     174     197 ..     171     202 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.96
                 HHHHHHHHHHHHHHHH CS
       TPR_6  13 lgdtdkAlealerlik 28 
                 ++d   A+e + + ik
  CCD24395.1 114 MKDFHLAVEKYTEAIK 129
                 3455556666666555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.44
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYP 31 
                 +a ++ +l++ ++A++  e+ ik  P
  CCD24395.1 141 RAAAHSSLKEFEEAIKDAESAIKIDP 166
                 5677788899**********999888 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0026
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +la + + lg++++Ale ++++++
  CCD24395.1 174 RLAFAKYGLGKHEEALESYKKVLD 197
                 7899999999************97 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00014      0.12       4      66 ..     144     206 ..     141     210 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00014
       TPR_9   4 iaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdae 66 
                 ++ + +++e+a++ +e+ + ++P     +   +++ + lG  ++Al+     l++++d+++a 
  CCD24395.1 144 AHSSLKEFEEAIKDAESAIKIDPSYSKGYSRLAFAKYGLGKHEEALESYKKVLDIEGDNATAG 206
                 6788899**************************************************999986 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1       0.2   1.7e+02     103     132 ..      97     126 ..      92     133 .. 0.85
   2 ?    6.9   0.2    0.0073       6.3      54      83 ..     134     163 ..     123     165 .. 0.90
   3 ?    4.6   0.0     0.037        32      58      82 ..     172     196 ..     169     199 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.2
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
     DUF3856 103 vfsravaleelGrkdealkafrmagemiae 132
                 +   a a++  G+k+ a+k f+ a+e  +e
  CCD24395.1  97 IKANAEAFKLEGNKAMAMKDFHLAVEKYTE 126
                 556789999999*********999997766 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0073
                 HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
     DUF3856  54 dalchaglsealaklgrydealesadkalr 83 
                 +a+ +a  + a   l++++ea++ a++a++
  CCD24395.1 134 NAIYYANRAAAHSSLKEFEEAIKDAESAIK 163
                 7999**********************9986 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.037
                 HHHHHHHHHHTT-HHHHHHHHHHHH CS
     DUF3856  58 haglsealaklgrydealesadkal 82 
                 ++ l+ a  +lg+++eales +k l
  CCD24395.1 172 YSRLAFAKYGLGKHEEALESYKKVL 196
                 5678888888888888888877765 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.38   3.2e+02      66      79 ..     118     131 ..     110     134 .. 0.81
   2 ?    9.4   2.0    0.0015       1.2      24      81 ..     134     194 ..     121     195 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.38
                 HHHTT-HHHHHHHH CS
      ANAPC3  66 llkLkkyeeAiaaL 79 
                  l+ +ky eAi++L
  CCD24395.1 118 HLAVEKYTEAIKIL 131
                 57789999999987 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0015
                 HHHHHH..HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  24 edayll..AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 +++y+   A ++ +++++++A++ +++a k++++  +    +A + + L+k+eeA+  ++k
  CCD24395.1 134 NAIYYAnrAAAHSSLKEFEEAIKDAESAiKIDPSYSKGYSRLAFAKYGLGKHEEALESYKK 194
                 5555547899***********************99999999***************98876 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.4   1.2e+03      16      33 ..      29      46 ..      20      62 .. 0.65
   2 ?    3.9   0.0     0.068        58      18      34 ..     115     131 ..     113     133 .. 0.87
   3 ?    1.4   0.7       0.4   3.4e+02       3      25 ..     134     156 ..     133     164 .. 0.87
   4 ?    4.1   0.3     0.057        49      18      32 ..     183     197 ..     176     223 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.4
         MIT 16 nagnyeeAlelYkealel 33
                na     A+++ +eale 
  CCD24395.1 29 NADSLNVAMDCISEALEF 46
                555555555555555443 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.068
         MIT  18 gnyeeAlelYkealelL 34 
                 +++  A+e+Y+ea+++L
  CCD24395.1 115 KDFHLAVEKYTEAIKIL 131
                 67889*********987 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.4
         MIT   3 kAlelvkkAveeDnagnyeeAle 25 
                 +A+ ++++A+   + +++eeA++
  CCD24395.1 134 NAIYYANRAAAHSSLKEFEEAIK 156
                 589999***************97 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.057
         MIT  18 gnyeeAlelYkeale 32 
                 g+ eeAle Yk+ l+
  CCD24395.1 183 GKHEEALESYKKVLD 197
                 789999999998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1080  (0.0602376); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2693.26
//
Query:       CCD24396.1  [L=562]
Description: hypothetical protein NDAI_0D00820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-162  541.7  31.7   1.6e-162  541.5  31.7    1.0  1  Sugar_tr  Sugar (and other) transporter
    7.1e-33  114.0  21.5    7.1e-33  114.0  21.5    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
        4.2    7.7   8.6          8    6.8   3.5    3.5  4  DUF1772   Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.5  31.7  2.6e-166  1.6e-162       1     452 []      60     520 ..      60     520 .. 0.99

  Alignments for each domain:
  == domain 1  score: 541.5 bits;  conditional E-value: 2.6e-166
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++l++a+gg++ g+dtg+ig+fl+ ++++++fg s+s++sk+ s+v++gl+vsif+vG++iGs+++g lgd++GR+k+++ia++++++g+v+q+a+   
  CCD24396.1  60 MCLMVAFGGFISGWDTGTIGGFLSHSDYINRFGSSHSDGSKYLSKVRTGLLVSIFNVGCAIGSVVLGRLGDTVGRRKGIVIAVFIYIVGIVIQIASI-- 156
                 69***********************************************************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  +++++++gR+++G+g G++ vl+Pm+isEi+pk+lRg+lvs+yql+itfG+++++++++g+++++n+ +wr++lgl++++al+++ +++ +PESPryl
  CCD24396.1 157 DKWYQYFIGRIIAGLGSGTIAVLSPMLISEISPKHLRGTLVSCYQLMITFGMFLGYCTNYGTKTYDNSIQWRVPLGLCFAWALVMIGAMFIVPESPRYL 255
                 56************************************************************************************************* PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksllv 292
                 vekg+ eeak+++ak+++++ +d++  +e++  + ++e+e    +asw+el+++kt v+qr+l+gv + ++qqltG+n+++yy++ if+ +gl++s+++
  CCD24396.1 256 VEKGQIEEAKRSVAKSNKVTIDDPATIQEIELVQIAVEAEqaagSASWSELFQTKTkVLQRTLMGVIVLALQQLTGCNYFFYYGTIIFKAVGLEDSFQT 354
                 *******************9999999999999999988888999******************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS........CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvR 384
                 ++i+g+vnf++tfva+++vd+ GRRt+ll+Gaagm +c+v+++  +v+ l+++++     k+a++ +ivf ++fi++fa++w+p+p+v++sE fp++v+
  CCD24396.1 355 SLIFGIVNFASTFVALYVVDKYGRRTCLLWGAAGMVCCMVVFAsvGVTKLWPNGQdqpssKGAGNTMIVFSCFFIFCFATTWAPIPFVIISESFPLRVK 453
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 385 skalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +k++a+ +++n ++nf i++++p+it+ai+ +y+++vf g++v+++ +vf fvpetkg++le+++ ++
  CCD24396.1 454 AKGMALGTVSNQMWNFCIGFFTPFITGAIN-FYYGYVFLGCLVFSYCYVFAFVPETKGLQLEDVNLMW 520
                 ******************************.*********************************9998 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0  21.5   1.2e-36   7.1e-33       1     346 [.      64     465 ..      64     469 .. 0.76
   2 !    6.5   8.3   0.00055       3.3      87     183 ..     420     514 ..     416     560 .. 0.75

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 1.2e-36
       MFS_1   1 lllaaflsalarsilgpalpl.alaedlgispse.........igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.l 87 
                 +++++f+s+++ +++g +l+   + + +g+s+s           gll++++ +g+a++s++lGrl+d +Grr+ ++++++++++g +++ +a +  w  
  CCD24396.1  64 VAFGGFISGWDTGTIGGFLSHsDYINRFGSSHSDgskylskvrTGLLVSIFNVGCAIGSVVLGRLGDTVGRRKGIVIAVFIYIVG-IVIQIAsIDKWyQ 161
                 589****************988888999966666666666666******************************************.555544444455* PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgg..lla.sslgWravfyilaivsllafvlfllllpeepperkrks 183
                  +++r+++Glg+g+++ ++  li++++pk  rg  ++++++++ +G+ lg+        +  s+ Wr++  ++ + +l+++  +++ +pe+p+    k 
  CCD24396.1 162 YFIGRIIAGLGSGTIAVLSPMLISEISPKHLRGTLVSCYQLMITFGMFLGYCTNYgtKTYdNSIQWRVPLGLCFAWALVMIG-AMFIVPESPRYLVEKG 259
                 **************************************************665442233434555**************944.3355566666666666 PP

       MFS_1 184 pkeee...............................kgtgpaplvpawkallkdp..vl...w.illialllfffgfsglltllplylqevlgls.gll 244
                 ++ee                                +  g a+    w++l+  +  vl   +  +++ +l   +g ++++++ +++  +  gl  + +
  CCD24396.1 260 QIEEAkrsvaksnkvtiddpatiqeielvqiaveaeQAAGSAS----WSELFQTKtkVLqrtLmGVIVLALQQLTGCNYFFYYGTII-FKAVGLEdS-F 352
                 6666588888888888888888888887777775543333333....5555555532222222345555555566777788888885.899999944.7 PP

       MFS_1 245 laglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..........ssavllllvlvl...iGfglgfv.fpsllalasdla 329
                 +++l   ++++v++++ ++a +++d++grr+ ll++ ++++++ + +a ++vt          ss+ ++  ++v+   + f+++++  p+ ++++s+++
  CCD24396.1 353 QTSL---IFGIVNFASTFVALYVVDKYGRRTCLLWGAAGMVCCMVVFASVGVTklwpngqdqpSSKGAGNTMIVFscfFIFCFATTwAPIPFVIISESF 448
                 7775...555555555999**********************************999999988833333333333333233466666588889999**** PP

       MFS_1 330 ppeeagtasglfntags 346
                 p +  ++ ++l ++ ++
  CCD24396.1 449 PLRVKAKGMALGTVSNQ 465
                 *9999999999888776 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00055
       MFS_1  87 lllvlrvlqGlgagalf.pagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrks 183
                 +++v+ ++  ++ ++ + p+  ++i++ fp + ++++++l ++++++   +   + ++++ ++++ + +++l+ + +  +    ++ ++++++    +
  CCD24396.1 420 TMIVFSCFFIFCFATTWaPIPFVIISESFPLRVKAKGMALGTVSNQMWNFCIGFFTPFITGAINFYYGYVFLGCLVFSYCY---VFAFVPETKGLQLE 514
                 467777777777766662667899*******************99999999999999999999999999999999999966...55555554444443 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.4   8.4e+03      56      78 ..     128     150 ..      99     156 .. 0.51
   2 ?   -2.2   0.0      0.78   4.6e+03     113     136 ..     156     179 ..     148     180 .. 0.85
   3 ?   -0.1   0.0      0.18     1e+03      49      95 ..     208     258 ..     193     286 .. 0.62
   4 ?    6.8   3.5    0.0013         8      36      80 ..     355     396 ..     285     409 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.4
     DUF1772  56 raasrgarllylaaaallllsiv 78 
                      g+r+ +++a  +++++iv
  CCD24396.1 128 LGDTVGRRKGIVIAVFIYIVGIV 150
                 23333334444343444666665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.78
     DUF1772 113 lerWgrlnlvRavlalaaavlgll 136
                 +++W ++  +R+++ l ++ +++l
  CCD24396.1 156 IDKWYQYFIGRIIAGLGSGTIAVL 179
                 5799999999*9999999988875 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.18
     DUF1772  49 afa.yla....araasrgarllylaaaallllsivpyTllvmvPtN.nkLaal 95 
                 +f+ y +    +   ++ ++++ l+  ++++ ++v + ++++vP   + L ++
  CCD24396.1 208 MFLgYCTnygtKTYDNSIQWRVPLG--LCFAWALVMIGAMFIVPESpRYLVEK 258
                 3443444555566667777888844..55555578888888888443444444 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.0013
     DUF1772  36 kavfpplallsalafaylaaraasrgarllylaaaal.lllsivpy 80 
                 + +f+ + ++s+ +++y++ ++ +r+++ll+ +aa++ +++  v++
  CCD24396.1 355 SLIFGIVNFASTFVALYVV-DKYGRRTCLLW-GAAGMvCCM--VVF 396
                 3567778888888888776.8899999****.555553774..443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 4214.47
//
Query:       CCD24397.1  [L=374]
Description: hypothetical protein NDAI_0D00830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-29  102.0   0.1      3e-28   98.0   0.0    2.2  2  Pirin     Pirin
    1.4e-18   67.1   0.0      6e-18   65.1   0.0    2.0  2  Pirin_C   Pirin C-terminal cupin domain
    0.00019   21.1   1.8    0.00032   20.3   0.8    1.9  2  Cupin_2   Cupin domain
  ------ inclusion threshold ------
      0.069   13.4   0.5       0.15   12.3   0.5    1.6  1  DUF4441   Domain of unknown function (DUF4441)
       0.25   11.2   2.5       0.58   10.0   2.5    1.6  1  PsbM      Photosystem II reaction centre M protein (PsbM)


Domain annotation for each model (and alignments):
>> Pirin  Pirin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   8.3e-32     3e-28       2     108 .]      90     189 ..      89     189 .. 0.92
   2 ?    1.7   0.0     0.067   2.4e+02      36      68 ..     251     283 ..     235     291 .. 0.78

  Alignments for each domain:
  == domain 1  score: 98.0 bits;  conditional E-value: 8.3e-32
                 EEECCGTCC.TTCCEECTCEECCEEESS.S.ETTEEEET-EEEEEEEBSEEEEEEEECSEEEEEETTS-EEEEETT-EEEEE-TT-EEEEEEE-SS..S CS
       Pirin   2 vrvrralgkaaelqsvdpFlfldefdpaelevgeedvigagfpphphrgletvtylleGevehrDslGnkgvirpGdvqwmtAgsGivhsEmneee..e 98 
                 +rvrra+g+ +e+ ++ pFl+ld+f+ + +   e     +gfp+hph+g et+ty+l+G + h+D +G+kgv+rpGd+q mtAg+GivhsEm+     +
  CCD24397.1  90 ARVRRAIGT-NEMPRFPPFLMLDHFKVTPP---E-----QGFPDHPHHGQETITYILDGMIAHEDFTGSKGVLRPGDLQFMTAGKGIVHSEMPVLMkdG 179
                 688999999.9999************6555...3.....8*****************************************************876568 PP

                 S-EEEEEEEE CS
       Pirin  99 esleglqlWv 108
                 ++  glqlWv
  CCD24397.1 180 RPGIGLQLWV 189
                 9999*****8 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.067
                 EEEET-EEEEEEEBSEEEEEEEECSEEEEEETT CS
       Pirin  36 edvigagfpphphrgletvtylleGevehrDsl 68 
                  d+ g++f++    ++++  y+++G+v   D+ 
  CCD24397.1 251 SDKAGVEFKQSVPDDFNVFLYVMKGAVVIDDQI 283
                 56668889999999*************998876 PP

>> Pirin_C  Pirin C-terminal cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.88   3.2e+03      17      53 ..     127     166 ..     114     181 .. 0.64
   2 !   65.1   0.0   1.7e-21     6e-18       7     103 ..     253     348 ..     247     349 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.88
                 -TT-EEEEEEEES-E...EESSTTEEE-TTEEEEE-SSSE CS
     Pirin_C  17 pegleaavyvleGel...evggerseieeeqlavlgdgds 53 
                  +g e++ y+l+G +    + g++  +++++l  +++g+ 
  CCD24397.1 127 HHGQETITYILDGMIaheDFTGSKGVLRPGDLQFMTAGKG 166
                 5567888899999884444445545555555555555544 PP

  == domain 2  score: 65.1 bits;  conditional E-value: 1.7e-21
                 -TT-EEEEE--TT-EEEEEEEES-EEESSTTEEE-TTEEEEE-.SSSEEEEE--SS-EEEEEEEE----S--EEETTEEESSHHHHHHHHHHHHTT-T CS
     Pirin_C   7 eagaelelplpegleaavyvleGelevggerseieeeqlavlg.dgdslvvkaeekgarvlLlaGePlgepvvqyGpfVmntkeeieqafedyregrf 103
                 +ag e+++++p+++++++yv++G + ++++   +++++ + ++ dg+s++ ++  +++++ +++G+ l++p vq+GpfV  t+e++ + fe+y++g +
  CCD24397.1 253 KAGVEFKQSVPDDFNVFLYVMKGAVVIDDQ--IFKQNTAVFFNvDGHSIKGQSATNDTEFAIIGGKILDQPLVQHGPFVETTREDLYKVFENYQQGIN 348
                 7899*************************9..59999999999**********99***************************************9965 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.8     9e-08   0.00032       5      52 ..     116     164 ..     112     170 .. 0.88
   2 ?   -2.6   0.0       1.3   4.7e+03      22      32 ..     269     279 ..     267     283 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 9e-08
                 EETTEEEEEECSSSEEEEEEEEESEEEEE.ECTEEEEEETTEEEEE-TT CS
     Cupin_2   5 lppGesapshrHpgedeffyVleGegelt.vdgeeveleaGdsvyfpag 52 
                  pp + +p h H+g++ + y+l+G ++ +   g + +l++Gd+ +  ag
  CCD24397.1 116 TPPEQGFPDHPHHGQETITYILDGMIAHEdFTGSKGVLRPGDLQFMTAG 164
                 46766************************9*************999998 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
                 EEEEEESEEEE CS
     Cupin_2  22 ffyVleGegel 32 
                 f+yV +G +++
  CCD24397.1 269 FLYVMKGAVVI 279
                 889*9999875 PP

>> DUF4441  Domain of unknown function (DUF4441)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   4.1e-05      0.15      32      79 ..      37      84 ..      12      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.1e-05
     DUF4441 32 kkqksleeikkkfkryikkkkfnnstlklLikhknygkiFkyfLenea 79
                + +k++e+  ++ ++ +++k++ n  + ++ + +  + i+kyf+  e 
  CCD24397.1 37 SMSKTKEQQPQQHQQVFTNKNIVNEDIARIATTDDARTILKYFIPDEQ 84
                557899999**********************************97665 PP

>> PsbM  Photosystem II reaction centre M protein (PsbM)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.5   0.00016      0.58       8      23 ..      21      36 ..      18      38 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00016
                HHHHHHHHHHHHHHHH CS
        PsbM  8 fiATaLfVliPtaFLi 23
                f AT+L+ l+P +F+i
  CCD24397.1 21 FLATLLLFLVPLIFSI 36
                99************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2839.89
//
Query:       CCD24398.1  [L=208]
Description: hypothetical protein NDAI_0D00840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-56  188.6   0.3    6.5e-56  188.4   0.3    1.1  1  Ras          Ras family
    7.1e-34  116.6   0.1      1e-33  116.1   0.1    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    1.9e-15   56.7   0.0    2.2e-15   56.5   0.0    1.1  1  Arf          ADP-ribosylation factor family
    3.2e-07   29.9   0.2    3.9e-07   29.6   0.2    1.1  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    9.7e-07   28.9   0.1    2.3e-06   27.7   0.0    1.6  2  MMR_HSR1     50S ribosome-binding GTPase
    2.6e-06   27.1   0.2    8.3e-05   22.2   0.2    2.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00014   21.3   0.2    0.00019   20.9   0.2    1.2  1  SRPRB        Signal recognition particle receptor beta subuni
    0.00015   21.7   0.1      0.029   14.3   0.0    2.4  3  RsgA_GTPase  RsgA GTPase
     0.0014   18.5   0.3      0.028   14.2   0.0    2.1  2  ATP_bind_1   Conserved hypothetical ATP binding protein
      0.005   17.1   0.0      0.011   16.0   0.0    1.6  1  AAA_22       AAA domain
     0.0059   16.2   0.0      0.016   14.8   0.0    1.6  2  cobW         CobW/HypB/UreG, nucleotide-binding domain
  ------ inclusion threshold ------
      0.015   15.0   0.3       0.12   12.1   0.1    2.1  2  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
      0.016   14.6   0.0      0.024   14.1   0.0    1.3  1  TniB         Bacterial TniB protein
      0.017   15.5   0.1      0.021   15.2   0.1    1.6  1  AAA_16       AAA ATPase domain
      0.024   14.6   0.1        0.1   12.5   0.0    1.9  2  NTPase_1     NTPase
      0.026   14.5   0.0      0.045   13.7   0.0    1.4  1  NACHT        NACHT domain
      0.028   13.9   0.1      0.044   13.3   0.1    1.3  1  AAA_7        P-loop containing dynein motor region
      0.029   14.1   0.2      0.076   12.7   0.1    1.9  1  AAA_24       AAA domain
      0.034   13.4   0.3       0.22   10.8   0.0    2.1  2  Septin       Septin
        0.2   12.2   0.4       0.31   11.6   0.4    1.7  1  ABC_tran     ABC transporter


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   0.3   7.3e-59   6.5e-56       1     161 [.      10     177 ..      10     178 .. 0.96

  Alignments for each domain:
  == domain 1  score: 188.4 bits;  conditional E-value: 7.3e-59
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET.TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd.gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeik 98 
                 K++++Gds+vGKtsl++r+v+dk++++y++Tig+df+tke+++d +k +++++wDTAGqe+f+sl  ++yr+a++++lvyd+t+++sfen+k+w +e+ 
  CCD24398.1  10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTIDdDKIATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNAKSFENIKSWRDEFL 108
                 99*****************************************9455669************************************************* PP

                 HHST....TTSEEEEEEETTTGGG.G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras  99 rvae....envpivLvGnKvDlee.kravsteegeelakelg.lkfletSAktnenveeafeellreil 161
                  +a+    e++p+v++GnK+D+ee k+ vs +++ elak+lg ++ + tSAk++ n+e+afee++r++l
  CCD24398.1 109 IHANistpETFPFVILGNKIDVEEsKKIVSSNSATELAKSLGdIPLFFTSAKDSINIENAFEEIARSAL 177
                 **99999999************995778999**********************************9876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.1   1.2e-36     1e-33       1     119 [.      10     129 ..      10     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 1.2e-36
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 Kv+++GdsgvGKtsl++r+v+dk+s+++k+tig+dfltkev +i+     +  k  ++++WDtaGqerf+sl   ++r+a++++lvyd   ++s+en+k
  CCD24398.1  10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEV-TIDD----D--KIATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDvtnAKSFENIK 101
                 9**************************************98.4443....3..4579*******************************86666789*** PP

                 HHHHHHHHHCS....SS.-EEEEEE-TT CS
         Roc  97 eWlkelkkvag....ks.pvilvgnkiD 119
                 +W +e+  +a+    ++ p++++gnkiD
  CCD24398.1 102 SWRDEFLIHANistpETfPFVILGNKID 129
                 ****98666542222225899******9 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.0   2.5e-18   2.2e-15      12     172 ..       6     173 ..       1     176 [. 0.82

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 2.5e-18
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE...TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei...knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeL 104
                 k+ l++++lG  + GKt +++++ +++ ++  + Tig  f ++e++i   k  +++vwD  Gqe+  +l   +++  d  + v D+++ + +e+ k+  
  CCD24398.1   6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQqYKATIGadFLTKEVTIdddKIATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNAKSFENIKSWR 104
                 44579******************99997664789998445689999966556789***********************************999999999 PP

                 HHHCTSGCCT...TSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHH CS
         Arf 105 kalleeeelk...evallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewls 172
                 +++l + +++   + ++++l+NK+D++e+ +    +++ +l +     ++ ++ +sa    ++++++e ++
  CCD24398.1 105 DEFLIHANIStpeTFPFVILGNKIDVEESKKIVSSNSATELAKSL--GDIPLFFTSAKDSINIENAFEEIA 173
                 998888877655589*************99988888888877644..466677788888778887777765 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.2   4.4e-10   3.9e-07       1     161 [.      10     161 ..      10     197 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4.4e-10
   Gtr1_RagA   1 kvLLmGksgsGKts.mrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 kv+++G sg GKts m++ + d+y+ +   ++ga   +++ ++   +  t+++wD  Gqe+f+   +   +     ++ vl+y  Dv++ +  e+++++
  CCD24398.1  10 KVIILGDSGVGKTSlMHRYVNDKYSQQYKATIGADFLTKEVTIDDDKIATMQVWDTAGQERFQSLGVAFYR---GADCCVLVY--DVTNAKSFENIKSW 103
                 89***********977999************************999999*************988644433...345556655..99888877777777 PP

   Gtr1_RagA  99 ke.ilealrqyspe.akvfvlihKmDliqedereeifeerkeeireeieklekeeiqffaTSiwd 161
                 ++  l ++    pe   + +l +K+D    + ++ + ++ ++e+ + + +     i +f TS  d
  CCD24398.1 104 RDeFLIHANISTPEtFPFVILGNKIDVE--ESKKIVSSNSATELAKSLGD-----IPLFFTSAKD 161
                 6513334444444404556666999976..45555555556665555544.....5577777665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   2.6e-09   2.3e-06       1     103 [.      10     106 ..      10     127 .. 0.68
   2 ?   -1.6   0.0       3.1   2.8e+03      52      75 ..     151     174 ..     128     195 .. 0.64

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 2.6e-09
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT...EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg...keielvDtpGliegaseekglgkaflaleeadlillvvdaseeklkpldee 96 
                 +v+i+G + vGK++L+ + +++k   + k+    d  +++v++++     ++++Dt+G  e   + ++lg af +   ad  +lv d++ +  k   e+
  CCD24398.1  10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTIDDdkiATMQVWDTAG-QE---RFQSLGVAFYR--GADCCVLVYDVT-N-AKSF-EN 99 
                 699******************976555555555555555555444114668*******.54...44489999995..578999999966.3.2333.66 PP

                 HHHHHHH CS
    MMR_HSR1  97 leellee 103
                 ++++++e
  CCD24398.1 100 IKSWRDE 106
                 6666543 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3.1
                 ECGGCSSHHHHHHHHHHHHHHHHC CS
    MMR_HSR1  52 DtpGliegaseekglgkaflalee 75 
                 D+p ++ +a+++ ++++af+++ +
  CCD24398.1 151 DIPLFFTSAKDSINIENAFEEIAR 174
                 444444445555566666666554 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2   9.3e-08   8.3e-05       2     189 ..       7     173 ..       6     179 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 9.3e-08
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEE CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlv 100
                 +i++++i+g+   GKt+L+ r + ++   +    ka  +   D+l +E    +Ti+   i +         ++ Dt G + F++   + +r +D++vlv
  CCD24398.1   7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQY---KA--TIGADFLTKE----VTIDDDKIATM--------QVWDTAGQERFQSLGVAFYRGADCCVLV 88 
                 7788888888888888888887744433222...22..2346666655....67776666555........999************************* PP

                 EETTTB........STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHH CS
    GTP_EFTU 101 vdaveG........vepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealv 189
                  d+++                ++++   e  p++++ NK+D  +++   + + +  +l         ++  g  ++p++f+Sa++  ++++ +e + 
  CCD24398.1  89 YDVTNAksfeniksWRDEFLIHANISTPETFPFVILGNKIDVEESKKIVSSNSAT-EL---------AKSLG--DIPLFFTSAKDSINIENAFEEIA 173
                 ****5544444433555666677778888999*********75433333333332.44.........12223..69999999999999998888776 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   2.2e-07   0.00019       5     144 ..      10     152 ..       5     190 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 2.2e-07
                 EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHH.HHH CS
       SRPRB   5 avllvGlsdsGKTslftrLttdsvkktvtSq..essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkev.AEl 98 
                 +v+++G s  GKTsl++r  +d++ + + +   +  ++++v  +++k  ++++ D  G+e++++ l   +   +    lv+ v  +    ++k+   E+
  CCD24398.1  10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATigADFLTKEVtiDDDKIATMQVWDTAGQERFQS-LGVAFYRGADCCVLVYDVTNAKSFENIKSWrDEF 107
                 69********************99888776655666777774456666788899*******975.5555455566777777776666666777642466 PP

                 HHHHHHHHHHHTT---EEEEEE-TTSTT---HHHHH..HHHHHHHHHH CS
       SRPRB  99 lyeilliteklkdavdiliACnKqelflakspklik..daLEkElnki 144
                 l++    +++++++ +++i  nK ++  +k+        +L k l+ i
  CCD24398.1 108 LIH---ANISTPETFPFVILGNKIDVEESKKIVSSNsaTELAKSLGDI 152
                 544...455568999999999999998888754333003455666654 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.3e-05     0.029     102     123 ..      11      32 ..       3      73 .. 0.79
   2 ?   -1.5   0.0       2.2     2e+03      70      96 ..      77     103 ..      56     111 .. 0.78
   3 ?    5.4   0.0     0.018        16      45      97 ..     117     172 ..      81     178 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.3e-05
                  EEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpel 123
                  ++++G SGvGK++L+ + ++++
   CCD24398.1  11 VIILGDSGVGKTSLMHRYVNDK 32 
                  6899***********9988753 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.2
                  HHHHHTTSEEEE--TTTHTTHHHHHHH CS
  RsgA_GTPase  70 eelealgyevllvsaktkegleelkel 96 
                  + ++ +++ vl+ ++++ +++e++k++
   CCD24398.1  77 AFYRGADCCVLVYDVTNAKSFENIKSW 103
                  567888889999999999999999887 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.018
                  TT-EEEEEEE-GGG--HHH..HHHHHHHHHHHTT.SEEEE--TTTHTTHHHHHHHC CS
  RsgA_GTPase  45 kgiepvivlnKiDlleeee..eleelkeelealg.yevllvsaktkegleelkell 97 
                  +  + vi+ nKiD+ e+++  + ++  e  ++lg ++++++sak++ ++e+  e++
   CCD24398.1 117 ETFPFVILGNKIDVEESKKivSSNSATELAKSLGdIPLFFTSAKDSINIENAFEEI 172
                  345678888*******9998866666666777765799999999998888766555 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.096        86       1      17 [.      13      29 ..      13      41 .. 0.82
   2 !   14.2   0.0   3.1e-05     0.028      70     175 ..      41     135 ..      29     184 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.096
  ATP_bind_1  1 vvGpaGsGKttfvgals 17
                ++G  G+GKt+++++ +
  CCD24398.1 13 ILGDSGVGKTSLMHRYV 29
                6899********98765 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.1e-05
  ATP_bind_1  70 valeflresldwl.deelekeeddyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltd...ptkfisgllsalsamlrlelPhvvvln 164
                 + ++fl++++  + d+++    +   + Dt GQ ++  +  +          ++a ++v + D++ +++     ++ ++ l+  ++      P+v+  n
  CCD24398.1  41 IGADFLTKEV-TIdDDKI----ATMQVWDTAGQERFQSLGVAFY--------RGADCCVLVYDVTNAKSfenIKSWRDEFLIHANISTPETFPFVILGN 126
                 4556666666.3313333....58999********999988888........9***********99999887888999********************* PP

  ATP_bind_1 165 kfDllkeklek 175
                 k+D+ ++k  k
  CCD24398.1 127 KIDVEESK--K 135
                 ****6644..2 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-05     0.011       9      38 ..      12      53 ..       5     103 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-05
      AAA_22  9 vvtGesGtGKTtllrrlleqldeeakaee............e 38
                ++ G sG+GKT l+ r+++ +  +++ ++             
  CCD24398.1 12 IILGDSGVGKTSLMHRYVNDKYSQQYKATigadfltkevtiD 53
                799**************9877555554444644444444443 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.8e-05     0.016       3      70 ..      11      92 ..       9     109 .. 0.74
   2 ?   -0.4   0.0      0.86   7.7e+02     140     156 ..     118     134 ..      80     150 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
                EEEEESTTCCHHHHHHHHH.CT--SS-EEEEESS-..SSCHCCCCCC......HCCCT..........EEEETTTTECCHCTT-HH CS
        cobW  3 tvltGflGsGKTtLlnhll.enraglklavivNef..gevsiDaell......retgve.........ivelenGciCctlredll 70
                +++ G  G GKT+L+ +++ ++ +++  a i  +f  +ev iD + +      +               v +  G  Cc l  d++
  CCD24398.1 11 VIILGDSGVGKTSLMHRYVnDKYSQQYKATIGADFltKEVTIDDDKIatmqvwD----TagqerfqslGVAFYRGADCCVLVYDVT 92
                6889999************55555666689999*94346999999994544441....0344456666888999999998777764 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.86
                 HTSSEEEEE-HHHHCHC CS
        cobW 140 aaadllvlnKtDlldee 156
                 ++  +++ nK+D+ +++
  CCD24398.1 118 TFPFVILGNKIDVEESK 134
                 44446777777766655 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   0.00014      0.12       3      36 ..      10      45 ..       8      56 .. 0.74
   2 ?    0.6   0.0      0.49   4.4e+02      98     140 ..     127     171 ..     106     174 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
   PduV-EutP  3 killiGkvgsGKttLtqalkg..eelkYkktqaief 36
                k++++G +g+GKt+L+++  +   + +Yk t   +f
  CCD24398.1 10 KVIILGDSGVGKTSLMHRYVNdkYSQQYKATIGADF 45
                89*************998766223456888766665 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.49
   PduV-EutP  98 kidlaedeeni..eaveelLksaGaekifevsavekegieellky 140
                 kid+ e+++ +  + + el ks G   +f +sa ++++ie+ ++ 
  CCD24398.1 127 KIDVEESKKIVssNSATELAKSLGDIPLFFTSAKDSINIENAFEE 171
                 788886555552134556667788888899999999999987765 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   2.6e-05     0.024      32      63 ..       5      36 ..       2      71 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
        TniB 32 rkrmpnlllvGdsnnGKtmivekFarlhppek 63
                +k + +++++Gds +GKt++++++ +++ +++
  CCD24398.1  5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ 36
                56677899*****************9986665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.2   0.1   2.3e-05     0.021      27      52 ..      11      42 ..       2     199 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.3e-05
      AAA_16 27 vllsGesGvGKsslv.rellralekd.....g 52
                v++ G+sGvGK+sl+ r + + ++++     g
  CCD24398.1 11 VIILGDSGVGKTSLMhRYVNDKYSQQykatiG 42
                89*************66666677777444442 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00011       0.1       1      53 [.      10      66 ..      10     102 .. 0.71
   2 ?   -0.3   0.0      0.96   8.6e+02      77     103 ..     164     189 ..     138     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
                EEEEE--TTSSHHHHHHHHHHHH...GGGEE.E..EEEEEE-------.EEEEEET. CS
    NTPase_1  1 kvfiTGppGvGKtTlvkkvlellkssgvkvg.G..fyteevreggrri.gFkivdla 53
                kv+i G +GvGKt l+++ ++   s+++k + G  f+t+ev+ ++ +i   ++ d a
  CCD24398.1 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATiGadFLTKEVTIDDDKIaTMQVWDTA 66
                58999*************999888888876334449999999555554145666663 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.96
                 -HHH.HHHHHHHHHHHHHHHH-EEEE-- CS
    NTPase_1  77 dves.feelalealrkalseadviviDE 103
                 ++e+ fee+a +al++  +++dv   DE
  CCD24398.1 164 NIENaFEEIARSALQQ--NQNDVDAFDE 189
                 4544499999999987..6777777776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.1e-05     0.045       3      23 ..      11      31 ..       9      48 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.1e-05
                EEEEC-TTTCHHHHHHHHHHH CS
       NACHT  3 vilqGeaGsGKTtLlqklala 23
                vi+ G++G+GKT L+++ + +
  CCD24398.1 11 VIILGDSGVGKTSLMHRYVND 31
                89*************997765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   4.9e-05     0.044      34      64 ..       9      39 ..       1      48 [. 0.82

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.9e-05
       AAA_7 34 kpvllvGptGtGKtviikdllkkldkekyls 64
                 +v++ G++G+GKt++++++++   +++y+ 
  CCD24398.1  9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKA 39
                57999**************888877787765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   8.5e-05     0.076       3      23 ..       9      32 ..       7      90 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.5e-05
      AAA_24  3 lkiliyGpsgiGKTtlakel...g 23
                lk++i G+sg+GKT+l+ ++   +
  CCD24398.1  9 LKVIILGDSGVGKTSLMHRYvndK 32
                699**************9985541 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00025      0.22       5      50 ..       9      54 ..       5      68 .. 0.73
   2 ?    0.2   0.0      0.42   3.7e+02     182     220 ..      99     137 ..      88     144 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00025
                EEEEEEEBTTSSCCCCCCTTSSSS------------------S-EE CS
      Septin  5 ftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikk 50
                + +++ G+sg+Gkt+l+   ++++  ++ k +  ++  +k+v+i+ 
  CCD24398.1  9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTIDD 54
                6899**************9999888877655555555555555554 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.42
                 -SSSS-SCCHHHHHHHHHHC-SEEB-SSSSEEEESSSEE CS
      Septin 182 deeededeeakelseklkeslPfaivgsneliekkgkkv 220
                 ++++  de   +++ +  e++Pf i+g +  +e++ k v
  CCD24398.1  99 NIKSWRDEFLIHANISTPETFPFVILGNKIDVEESKKIV 137
                 556666777888888899999****99999988876665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   0.00035      0.31      13      37 ..      10      34 ..       6     193 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00035
                EEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkp 37
                kv i+G++G GK++L+    +    
  CCD24398.1 10 KVIILGDSGVGKTSLMHRYVNDKYS 34
                689************9765554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       858  (0.0478554); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.51u 0.31s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 1432.93
//
Query:       CCD24399.1  [L=790]
Description: hypothetical protein NDAI_0D00850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-46  156.4   1.2    7.3e-45  152.8   0.1    2.4  2  DNA_pol_A_exo1  3'-5' exonuclease
    6.4e-21   74.9   4.8    6.4e-21   74.9   4.8    3.4  3  PMC2NT          PMC2NT (NUC016) domain
    4.9e-12   45.7   0.0    1.1e-11   44.6   0.0    1.6  1  HRDC            HRDC domain


Domain annotation for each model (and alignments):
>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8   0.1   1.2e-48   7.3e-45       3     175 ..     236     401 ..     234     402 .. 0.99
   2 ?    1.8   0.1     0.029   1.7e+02      90     133 ..     520     584 ..     509     603 .. 0.83

  Alignments for each domain:
  == domain 1  score: 152.8 bits;  conditional E-value: 1.2e-48
                     EEHSHHHHHHHHHHHTTSSEEEEEEEEE-SSSTTSSEEEEEEEEECSSEEEEEECTTTTTT-HGHHHHHHHT-TTSEEEESSHHHHHHHHHHHHT CS
  DNA_pol_A_exo1   3 ivtdeeeleelieelknlkvvavDtEttsldlisatlvliliqlgekeeayiidplelgddvalealkrlledenitkvghnakfDlevlardfg 97 
                     +v++ e l+++i+ l+n++++avD E++++++  +++ ++l+q+++++++yi+d+l+l+    l++l++ +++++itkv+h+a +D+ +l+rd g
      CCD24399.1 236 WVDTPESLQSMIKDLNNCTEFAVDLEHHDYRT--YYGIVCLMQISTRTQDYIVDTLKLRSH--LQPLNEPFTNPQITKVLHGAFMDIIWLQRDLG 326
                     89******************************..**************************8..******************************** PP

                     S--SSEEEHHHHHHHTTHSTTSSHHHHHHHHHSB---GHCCTTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHHH CS
  DNA_pol_A_exo1  98 ielenlfdtmlaayvldyershsLdsLaekylgdleldkeeqiakwqkarplleeqllYAaeDadvllrlfkkLtkel 175
                      ++ +lfdt  a++ l++++  sL++L+ek+ + ++++k++q+a+w+  rpl++ + +YA+ D+++ll++f++++++l
      CCD24399.1 327 LYIVSLFDTFHASRALGFPK-NSLAYLLEKFSN-FKTSKKYQMADWR-IRPLSKAMNSYARSDTHFLLNIFDQMRNKL 401
                     ********************.9***********.*************.***************************997 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.029
                     HHHHHHHTS--SSEEEH.HHHHHHTTHSTT...................SSHHHHHHHHHS.B-- CS
  DNA_pol_A_exo1  90 evlardfgielenlfdt.mlaayvldyers...................hsLdsLaekylg.dle 133
                     ++la+ ++ +l  + dt ++++ +l+ e++                   h L++L  ++l+ + +
      CCD24399.1 520 KILANLIKNCLTKIKDTtDADSLILQQEQNqpgtsttttnvdlseqlsiHQLNTLKSQFLSlYSK 584
                     688899999999999999999999999999999999999999999999***********994433 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   4.8   1.1e-24   6.4e-21       1      89 [.      33     117 ..      33     120 .. 0.93
   2 ?    2.9   0.4     0.031   1.9e+02      21      56 ..     507     542 ..     504     566 .. 0.78
   3 ?   -2.4   0.3       1.3   8.1e+03      50      64 ..     710     724 ..     698     758 .. 0.53

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 1.1e-24
      PMC2NT   1 veatraanaLpaeDldfyrsldpefaksldeqserllslinsllklaaskseisassklededdveekfksvvdvvDsllEkadtcLDe 89 
                 v+++ra+ aL+a+D+dfyrs+d+ +ak l+e++++l ++ins+l +++++se+ +  ++e+++d   ++k++++++D+llEk+d ++D 
  CCD24399.1  33 VQTVRASVALAAQDVDFYRSMDKTTAKTLKETTSQLADMINSVLLAVDENSETLDG-TKENLED---NWKDFSNLMDNLLEKSDRSMDM 117
                 79***************************************************887.5555555...*********************6 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.031
      PMC2NT  21 ldpefaksldeqserllslinsllklaaskseisas 56 
                 +++ ++++++++s+ l +li+++l  ++  +++ + 
  CCD24399.1 507 VSNMVTDHVRSNSKILANLIKNCLTKIKDTTDADSL 542
                 566788999****************99999888554 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.3
      PMC2NT  50 kseisassklededd 64 
                 ++ ++ + k+ d dd
  CCD24399.1 710 NKGKKRERKHSDDDD 724
                 444333323333333 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   1.8e-15   1.1e-11       4      67 ..     462     525 ..     459     526 .. 0.92

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.8e-15
                 HHHHHHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHHHHHHHHHHH CS
        HRDC   4 llkaLrewReelAreedvppyvvfpdktLleiAeklPttleeLlqiegvgkrklekygeeilea 67 
                 llk+L++wR+++Ar+ d++p++++p++ L+++++++P  ++ + +++ + +  ++ + + + ++
  CCD24399.1 462 LLKELYQWRDKIARRDDESPRYIMPNQLLVSLVAYAPVEPAGVVSVSNMVTDHVRSNSKILANL 525
                 89**********************************************9999999887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1632  (0.0910257); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5397.28
//
Query:       CCD24400.1  [L=666]
Description: hypothetical protein NDAI_0D00860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-124  415.2  16.9   8.1e-124  413.7  16.9    1.8  1  NPR2      Nitrogen permease regulator 2
  ------ inclusion threshold ------
        2.2    8.2  14.1        6.8    6.6   0.1    3.1  3  FAM60A    Protein Family FAM60A


Domain annotation for each model (and alignments):
>> NPR2  Nitrogen permease regulator 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.7  16.9    9e-128  8.1e-124       2     436 ..      18     655 ..      17     659 .. 0.86

  Alignments for each domain:
  == domain 1  score: 413.7 bits;  conditional E-value: 9e-128
        NPR2   2 pikaifyavFhpteGtkivhqvPegsivtssesdekealFeFdtvknyviPkpqlcnrllslkinkykvlgyPvnienekYsRneFtFnfafvidydes 100
                 pi++ify+ FhpteGtk+  ++P+        s+ +++  +Fd++kny+iPk+qlcn+ll++k   y+++ yP++i+ + Y+Rn F+Fnf fv++yd  
  CCD24400.1  18 PIHTIFYSIFHPTEGTKVRYEFPP--------SNLAASDIHFDAIKNYIIPKKQLCNKLLTFKYANYRIVSYPITINSDFYARNFFSFNFVFVFPYD-C 107
                 89**********************........56677779*********************************************************.* PP

        NPR2 101 dttpYesvvkrlgrllrvlEeqnkfLskedkdvvffk.............................................................. 137
                 +t+pYe+++ rlg++++vlEeqn++Lsk ++d + fk                                                              
  CCD24400.1 108 ETSPYEPAIARLGKMFKVLEEQNQILSKAENDPIYFKsdytpyqptliiptnndndgkrnkklmkkentifstrqqrsnsnrileensnsnsnsnsnsn 206
                 ************************************9***********************************************998888888766554 PP

        NPR2 138 ..saklaeadatvnvpgasklssieslieqileDLnnysEcviplddsnsvdlKLfPilpePv..nikayqvPiatvklsslvdvnwDltlkkilpyin 232
                   +   + ++ +   + +s + s+++li +i++DLnnysEc+ip+dd n vd+K+fP+l++P+   ++   vP++ v l+++ dvnwD+t+ k++p+in
  CCD24400.1 207 gnENDNNYNTIEQYLNNNS-RISVQDLIMRIYQDLNNYSECLIPIDDGNNVDIKIFPLLKPPPanSLSIEDVPMSLVDLTKITDVNWDPTMLKLIPFIN 304
                 4322223333334444444.599***********************************9977633477889**************************** PP

        NPR2 233 GinsvkriaeladadlsLtkqciqhLlyYkcielldiFqfsniYaptneigdFlkdegeiadeCqayvvveeskl........................ 307
                 Gin++ +i++l +  ++L+ +ci+hL+yY+c+ + diFqfsn+Y +t  i+ Fl+d+ ++a  Cq+yvv +                            
  CCD24400.1 305 GINDISKISKLSNSSPMLVIECIKHLIYYNCVIITDIFQFSNTYSTTSLISTFLTDP-NMATLCQNYVVLPLGSKltrlpfhietetsvqsssayrhhh 402
                 *********************************************************.************96555699********************* PP

        NPR2 308 .................gsnsvsplsktsllsksskkvteakadeeevevkvpskttlfrLyrslkqgqtvkeWvlqekkl..lagiDvrRliqFGvlk 387
                                  g +s s+  ++++ ++ +++    ++ +    ++ p+k++lf+Lyrsl+q   +k+W++++  +   ++iD+r++i+FG++k
  CCD24400.1 403 nrhektpsfgssitsnnGRSSFSADDRKQSETSLNSSN-DPSNSNLISTAHLPTKMSLFELYRSLNQRTDLKNWYKLNYTTiiENNIDIRKFIKFGIIK 500
                 ******99966665333222222222222222222222.2223344556789**************************99855699************* PP

        NPR2 388 gliyrvhkypilnssak.................................................................................. 404
                 gliyr h+ypi+ + +                                                                                   
  CCD24400.1 501 GLIYRCHSYPIVITPVVsapesakstspfvsssgisssvdskqhtqkgpisrfpglgshvpssgvrdtrdklmksfyeklekgknhskvsfsdkiafqn 599
                 ***********9997667888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP

        NPR2 405 ........................antllksldglkslDellkelkvkeekleekl 436
                                          n ll s+ ++ ++D+++ +l+   +++ee l
  CCD24400.1 600 dendhsatssdnddksksqltlkqRNILLDSISNMDNMDKICVKLGRPRSQIEEWL 655
                 88888888888888888888888777888888888888888888877777776665 PP

>> FAM60A  Protein Family FAM60A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.3    0.0014        12     104     163 ..     164     223 ..     124     246 .. 0.60
   2 ?    6.6   0.1   0.00076       6.8     103     206 ..     398     518 ..     376     524 .. 0.54
   3 ?    1.8   0.8     0.022     2e+02     108     152 ..     578     619 ..     533     646 .. 0.48

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0014
      FAM60A 104 eekfekklkkkkklkktkakasdasssereaspassdsasedsdesedeeekkrkkllek 163
                  ++ +k +kk++++ +t+++ s++++  +e+s+++s+s+s+++ +++d++ +  ++ l++
  CCD24400.1 164 GKRNKKLMKKENTIFSTRQQRSNSNRILEENSNSNSNSNSNSNGNENDNNYNTIEQYLNN 223
                 233444455555555555555555555555555555555555544444444433333332 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00076
      FAM60A 103 ieekfekklkkkkklkktkakasda....sssereaspassdsasedsdesedeeek........................krkkllekkkkrsaeklv 173
                   ++ +++ k     ++ ++++       s ++r++s +s +s+++          +                        +r++l++  k + ++ + 
  CCD24400.1 398 YRHHHNRHEKTPSFGSSITSNN--GrssfSADDRKQSETSLNSSNDP---------SnsnlistahlptkmslfelyrslnQRTDLKNWYKLNYTTIIE 485
                 2222222222222222211111..11122112222222221111111.........0223445566778999999998875555555555666666777 PP

      FAM60A 174 sfldlsylkrekvCCGiifkglsgevlidpkll 206
                 + +d   + +  +  G i+++ s  ++i p + 
  CCD24400.1 486 NNIDIRKFIKFGIIKGLIYRCHSYPIVITPVVS 518
                 889999999999*********999999998765 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.022
      FAM60A 108 ekklkkkkklkktkakasdasssereaspassdsasedsdesede 152
                 ek  k k+++k + +++ + +++e+++s++ssd+   d++++++ 
  CCD24400.1 578 EKLEKGKNHSKVSFSDKIAFQNDENDHSATSSDN---DDKSKSQL 619
                 2222222221222222222233333333333332...22222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1707  (0.0952089); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.49
# Mc/sec: 4111.63
//
Query:       CCD24401.1  [L=1069]
Description: hypothetical protein NDAI_0D00870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.8e-96  322.3  20.6    4.4e-61  206.7   6.8    3.3  3  Kinesin      Kinesin motor domain
    1.6e-21   76.8   0.3    1.6e-21   76.8   0.3    2.9  2  Microtub_bd  Microtubule binding


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.5     3e-40   2.7e-36       1     177 [.      59     249 ..      59     280 .. 0.86
   2 !  206.7   6.8   4.9e-65   4.4e-61     157     333 .]     340     508 ..     288     508 .. 0.92
   3 ?   -2.7   0.6      0.25   2.2e+03     153     187 ..     582     615 ..     538     660 .. 0.73

  Alignments for each domain:
  == domain 1  score: 125.2 bits;  conditional E-value: 3e-40
                 EE-SSSHHHHTTTTEBCEEEEC.....TCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTB CS
     Kinesin   1 RvRplnekekeeeeeeevevee.....ekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmeg 94 
                 R+R +ne+e + +++ +v+v +     e + +++++   + + ++k+++ dkvf+++a+q+ +++e+a+pl  ++++Gyn+t++ YG+t++GKTyTm+g
  CCD24401.1  59 RCRGRNEREIKLKSSVIVTVPDingsnEVSINTTDDVGITAQMNSKTYTVDKVFGPSANQQLIFDEVAEPLFLDFIKGYNCTVLVYGMTSTGKTYTMTG 157
                 9****************9998866543333344444455778899****************************************************** PP

                 C.......TTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTT......TSTSSEBEEEECTTSCCEEETTS--EEESS CS
     Kinesin  95 k.......eeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskk......skkkkklkiredskkgevyvkgltevevks 177
                 +        +e++Giipr+l +lF++++ ++e    ++ vk+s++E+Yne + DLL++++      +++ +kl+i ++s+ ++v+v g +  +  +
  CCD24401.1 158 DeklyngeLSESAGIIPRILFKLFDTLEMNQE----DYVVKCSFIELYNEDLKDLLNDNNnsinnsKSNINKLRIFDSSTASNVNVPGSNASSRAN 249
                 *******98889***************88665....59********************99999876555569********99****9988766555 PP

  == domain 2  score: 206.7 bits;  conditional E-value: 4.9e-65
                 EECTTSCCEEETTS--EEESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHH CS
     Kinesin 157 redskkgevyvkgltevevksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlk 255
                 ++d+++g +y+++l+e ++++a+e l ll+kg k r+va+tk+n+ SSRSH++ftitl ++++ +      + sk+nLvDLAGsE+++++ga  ++r k
  CCD24401.1 340 QDDNNNG-IYIQNLQEFHISNAKEGLALLQKGLKYRQVASTKMNDFSSRSHTIFTITLYKEHQGT----LFRLSKMNLVDLAGSENINRSGA-INQRAK 432
                 5667766.****************************************************99663....368*******************6.6999** PP

                 HHHHHHHHHHHHHHHHHHHHHTCCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 256 EaaniNkSLlaLgrvisaLaekkkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 E+++iN+SLl+Lgrvi++La++  ++hip+R+SkLTrlLqdsLgGn+kt++i+t+sp++ + eet stl++a++ak+i
  CCD24401.1 433 ETGSINQSLLTLGRVINSLADR--NNHIPFRESKLTRLLQDSLGGNTKTALIATISPAKVTSEETCSTLEYASKAKNI 508
                 **********************..****************************************************98 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.25
                 EBEEEECTTSCCEEETTS--EEESSHHHHHHHHHH CS
     Kinesin 153 klkiredskkgevyvkgltevevksaeevlellek 187
                 +  + +d++++   v++l+ ++++++++ +++l++
  CCD24401.1 582 NALLLKDKRTS-NEVNELQRIKLSKFQDSINMLQE 615
                 33444555544.67777777777777777777765 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.3   1.8e-25   1.6e-21      21     149 .]      53     209 ..      33     209 .. 0.76
   2 ?   -3.9   3.0       1.3   1.2e+04      53      67 ..     640     655 ..     547     724 .. 0.58

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 1.8e-25
                  B-EEEEEEECCCS-T...........EEEETTT....................TTTEEEE-SEEEECTTHCCCCCCCCH.HHHHHHHTT--EEEEEEE CS
  Microtub_bd  21 niRvfarvrpelesek..........akikfpe.................eekkkkkefsFdrvfeseseqeevfeeis.qlvqsaldgynvcifayg 90 
                  ni v +r+r ++e+e                 +                 + + ++k+++ d+vf ++++q+ +f+e++  l    ++gyn++++ yg
   CCD24401.1  53 NITVAVRCRGRNEREIklkssvivtvP-----DingsnevsinttddvgiTAQMNSKTYTVDKVFGPSANQQLIFDEVAePLFLDFIKGYNCTVLVYG 145
                  555555555555554333444333330.....1333334444445589998899***********************9625778888*********** PP

                  S........................ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  91 qTGsGKtyTmeg........eeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                   T  GKtyTm+g         +e+ag ipr++ ++f+t++ +   + +y ++++f+e+yne+++DlL
   CCD24401.1 146 MTSTGKTYTMTGdeklyngeLSESAGIIPRILFKLFDTLEMN---QEDYVVKCSFIELYNEDLKDLL 209
                  ************988887665788899999999999998888...78*******************8 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.3
                  E-SEEEECTT.HCCCC CS
  Microtub_bd  53 sFdrvfeses.eqeev 67 
                  +F +++e+ + +q +v
   CCD24401.1 640 TFKKMIENYEcQQIDV 655
                  3333333322233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1069 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2606  (0.145351); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 6893.01
//
Query:       CCD24402.1  [L=579]
Description: hypothetical protein NDAI_0D00880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-86  291.0   9.8    3.4e-86  289.9   9.8    1.5  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.9   9.8   1.9e-90   3.4e-86       1     489 [.      52     556 ..      52     558 .. 0.93

  Alignments for each domain:
  == domain 1  score: 289.9 bits;  conditional E-value: 1.9e-90
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHH....HHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPa....akllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegye 95 
                 lad+v+ttlGPkG+++++++++g++++T+DG+t++k++ +e+      akll+e+a++++e +GDGTt++++L +++ +e+ k +aag +p ++++g +
  CCD24402.1  52 LADAVSTTLGPKGRNVLIEQPFGAPKITKDGVTVAKSIVLEDKFenmgAKLLQEVASKTNEAAGDGTTSATVLGRAIFSESVKNVAAGCNPMDLRKGSQ 150
                 79************************************************************************************************* PP

                 HHHHHHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCSEECSCCCEECCCCEECECTTSEEE..SEEEESS--SS CS
  Cpn60_TCP1  96 kalekaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieenekeldlgrikvvkieggsledselv..eGlvldkgvls 192
                  a+ek++++L+e+++ei ++    ee+++va++s++++       +++kl++ A+          ++g+ +v++i +g+ ++ el+  eG+ +d+g++s
  CCD24402.1 151 LAVEKVIKYLSEKKKEITTS----EEIAQVATISANGD------VHVGKLLASAM---------EKVGKEGVITIREGRTMEDELEvtEGMRFDRGFIS 230
                 *************9999988....9*************......9**********.........79*************965555555*********** PP

                 T.......TSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S-... CS
  Cpn60_TCP1 193 p.......dmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrv... 281
                 p       + + ++e++ +ll +++L+  ++                        +++ le   +s +++++++++id +al+ +  n++++  +v   
  CCD24402.1 231 PyfitdakSGKVEFEKPLLLLSEKKLSSIQD------------------------ILPALELSNQSRRPLLIIAEDIDGEALAACILNKLRGQVKVcav 305
                 *888766544667799999999999999999........................**************************************9999** PP

                 ........-HHHHHHHHHHHT--EBSCGGGGGCGC.....-EEEEEEEECCETTCCEEEEE....................................CE CS
  Cpn60_TCP1 282 ........kkkdlerlakatGatavssledltpee.....lGtakkveeekigsekttiie....................................ev 331
                         +k+ l ++a++tG+t++++  dl+p++     lG+++++   +i++e+t+i++                                      
  CCD24402.1 306 kapgfgdnRKNVLGDIAILTGSTVFTEELDLKPDQctiehLGSCDSI---TITKEDTVILNgngskeniqerieqiknsiditttnsyekeklqerlAK 401
                 ****************************999998889999*******...***********88888888877777777776666666655555554433 PP

                 SSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHHHHHHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHH CS
  Cpn60_TCP1 332 ksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelelakklkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlak 430
                 +sg++a+i ++g++++++ e++++ +dAln++++a+e e+++pGGG +++++++ l +  +  + +++l++++++kA++ ++k+++eNaG ++  ++ k
  CCD24402.1 402 LSGGVAVIRVGGSSEVEVGEKKDRYDDALNATRAAVE-EGILPGGGTALVKASRIL-DDIEVENFDQKLGVDIIRKAITRPAKQIIENAGEEGSVIVGK 498
                 9************************************.******************.6667789*********************************** PP

                 HHHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCEEEEEXX CS
  Cpn60_TCP1 431 lraahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLrideiika 489
                 l+++  ++    g+d+++ge++d++++g++Dp+kv+r++l  A+ +as++ +++  i++
  CCD24402.1 499 LTDEYGEDF-AKGYDAAKGEYTDMLASGIIDPFKVVRSGLVDASGVASLLATTEVAIVD 556
                 ***887777.***************************************9999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4411.81
//
Query:       CCD24403.1  [L=539]
Description: hypothetical protein NDAI_0D00890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.8e-70  235.9   2.2    2.8e-70  235.9   2.2    2.5  2  RNA_pol_I_TF  RNA polymerase I specific initiation factor
  ------ inclusion threshold ------
       0.13   12.7   0.2       0.37   11.2   0.2    1.7  1  IMS_HHH       IMS family HHH motif
       0.31   10.0   0.6       0.48    9.3   0.6    1.2  1  DDR           Diol dehydratase reactivase ATPase-like domain


Domain annotation for each model (and alignments):
>> RNA_pol_I_TF  RNA polymerase I specific initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2      0.07   4.2e+02      90     119 ..      12      45 ..       4      58 .. 0.64
   2 !  235.9   2.2   4.7e-74   2.8e-70       3     199 .]     177     395 ..     175     395 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.07
  RNA_pol_I_TF  90 eeetsse...kflewlssvys.skkafnqstsrr 119
                   ++ t+++    +++ ls+ y  +++++n++++++
    CCD24403.1  12 RTATERKiryTYINQLSKKYNrTQNRHNNNNNNN 45 
                   333333366689999*****95555555555554 PP

  == domain 2  score: 235.9 bits;  conditional E-value: 4.7e-74
  RNA_pol_I_TF   3 knldssekkakanflikskglevlpdskseirsyktkhienltqllhlnilrrnwklAykiFslLiRlpevdirsiWplGveiLekleeetssekfl 99 
                   ++l + +k +k  f+++s+gle++     +i++   +hie+lt+ll+ln++r+nw++Ay+iF+lLiR+++ dirsiW++Gv+iL++++ +++  +fl
    CCD24403.1 177 VPLLHASKINKLCFEAMSEGLELVT-PLVTIENFSLQHIEKLTTLLYLNVSRENWDIAYRIFTLLIRIKKLDIRSIWGIGVRILSEKSPTKTL-DFL 271
                   678999*****************99.99**********************************************************9998776.*** PP

  RNA_pol_I_TF 100 ewlssvysskkafnqstsrrslapvfrsGsrthtplyvitsLWkllikrk.......................ssssvldk........leelidkl 165
                   +w++svyss+ +f q  ++r ++pvf+sGsrthtp+y +t+LWk+li+ +                       +               l  li+k+
    CCD24403.1 272 NWMNSVYSSRLNFIQGINYR-MDPVFKSGSRTHTPKYTLTWLWKSLIQYStkkiisgnnnsnesledgssselD------IdinidrnnLLDLIEKI 361
                   ********************.***************************99888888888887777776544442......14455557799****** PP

  RNA_pol_I_TF 166 selvLePPysedgelyfllalcklleaeelsskf 199
                   se+vL+PP++ed+e++f+++lc+++ a++lsskf
    CCD24403.1 362 SEMVLIPPFMEDSEVWFIYSLCHMVLADDLSSKF 395
                   *******************************998 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   6.1e-05      0.37       8      22 ..     243     257 ..     239     261 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.1e-05
     IMS_HHH   8 LwplpitkipGiGgk 22 
                 +++l+i++i+GiG +
  CCD24403.1 243 IKKLDIRSIWGIGVR 257
                 789**********65 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.6   8.1e-05      0.48     196     256 ..     117     177 ..     100     183 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 8.1e-05
         DDR 196 eslfhireEdgtvqFfdkpldpevfarvvllkedelvpleed.lslekirsvRreaKekvfv 256
                 es +hi+ E+ +++Ff+k  +p+    +   ++ + vp++++ ++  k++++ ++aK+k+ v
  CCD24403.1 117 ESAHHIH-ENEERKFFKKYEKPQETFEIWQTNNLKRVPINKSmITYTKLKKIEKQAKRKITV 177
                 8999995.88999*********99999999999999**976616789************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1649  (0.0919739); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 3874.06
//
Query:       CCD24404.1  [L=865]
Description: hypothetical protein NDAI_0D00900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-08   34.9  10.4    1.2e-08   34.9  10.4    2.0  3  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9  10.4   6.7e-13   1.2e-08       1      37 [.      29      64 ..      29      67 .. 0.93
   2 ?   -3.7   0.0      0.77   1.4e+04      28      36 ..     508     516 ..     505     518 .. 0.74
   3 ?   -2.5   0.3      0.34   6.1e+03      27      36 ..     594     603 ..     587     606 .. 0.70

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 6.7e-13
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysess 37
                h+C++C+ +K +Cd+++P+Cs+C++ + +C+ y+ ++
  CCD24404.1 29 HVCITCKNQKLRCDRERPSCSRCRRIGRDCV-YESPT 64
                89*****************************.87765 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.77
                 HHHCCCCTC CS
     Zn_clus  28 leCtfyses 36 
                 l+Ct +s+ 
  CCD24404.1 508 LDCTSNSQE 516
                 699988775 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.34
                 THHHCCCCTC CS
     Zn_clus  27 nleCtfyses 36 
                 +++C+ ++e+
  CCD24404.1 594 EKKCSNNWEK 603
                 4899999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 6110.51
//
Query:       CCD24405.1  [L=343]
Description: hypothetical protein NDAI_0D00910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-19   69.9   0.0    3.1e-19   69.4   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
    4.4e-13   48.9   0.1    6.4e-13   48.3   0.1    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    5.5e-07   29.3   0.4    5.7e-06   26.0   0.4    2.1  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    9.6e-07   28.9   0.0    2.9e-06   27.3   0.0    1.8  2  NAD_binding_10   NAD(P)H-binding
    1.1e-06   28.0   0.0    1.1e-05   24.8   0.0    2.0  1  NAD_binding_4    Male sterility protein
      2e-05   24.1   0.5    0.00036   20.1   0.0    2.6  2  adh_short        short chain dehydrogenase
    0.00013   21.2   0.1     0.0025   17.0   0.1    2.3  2  Polysacc_synt_2  Polysaccharide biosynthesis protein
    0.00018   21.2   0.1     0.0038   16.8   0.0    2.2  2  NmrA             NmrA-like family
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.024   14.5   0.0    1.5  1  KR               KR domain
      0.014   16.0   0.0      0.042   14.4   0.0    1.8  1  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.071   12.7   0.0        0.3   10.6   0.0    2.0  2  adh_short_C2     Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   1.9e-22   3.1e-19       1     228 [.       3     256 ..       3     266 .. 0.77

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 1.9e-22
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC.......EEEE--TT-HHHHHHHHHHH..T-SEEEE--S---HHHHHHSHHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl.......elveldltdrsalerlfkee..qpdavihlAavggvaassedpadfiek 90 
                 +++ GatGfi +++v +lle++ +vig  r +++  + +++           +  d+  ++a++++f+++  ++ +v+h        +s ++ +d++  
  CCD24405.1   3 VFISGATGFIAQHIVAQLLENDFKVIGSVRSQEKADKLLKQ-FnnnenltLEIVKDISLPNAFHEVFAKYkgKIKYVLHT-SSPFFFDSDDYEKDLLIP 99 
                 6899***********************99995554433333.2578877522345888899*******998889999999.788999999********* PP

                 HTHHHHHHHHHHHHH...TCTEEEEEEE.GGGGT...........SCSS.SS.BSTCSTTS--.--SSHHHHHHHHHHHHHHHHHHHHT....-EEEEE CS
   Epimerase  91 nlqgtlnlleaarka...gvkrllflsS.sevYG...........kdae.qp.keettltgpl.kpnspYaaaKlageklveayaaqyg....lnaiil 167
                  l+gt n+l+a+ ++    v+r++  sS +++             + ++  p  +e    + l +   +Y a+K  +ek+++++ ++++    +  +++
  CCD24405.1 100 ALNGTENILNAILDHaadTVERVVITSSeAAMIDitryfdptffyDENSwNPtSHE----EALiNGVHAYTASKKFAEKYAWDFIEEHKnqikFALTTV 194
                 *************99555666*******4445556666666666533332343222....233599*******************999667778899** PP

                 EESEEESTTS-TTSTTSHHHHHHHHHHTTS.SSEEEETTST-EEEEEEHHHHHHHHHHHHHH CS
   Epimerase 168 rlfnlyGprngegevsrvipalirkilegk.qevtllgdgtalRdflyveDvaeaillvleh 228
                 +++n++Gp +++++v++ +    + i++    +v    d t    f++v+Dva+a+ll+l++
  CCD24405.1 195 NPCNVFGPQQFDENVTSPMNTSCEIINKLVhSSVDTKVDRTTMGKFIDVRDVAKAHLLALQN 256
                 *********77766666555444433332234677777999********************9 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.1   3.9e-16   6.4e-13       2     231 ..       5     256 ..       4     261 .. 0.69

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 3.9e-16
   3Beta_HSD   2 vtGgaGFlGralvkeLvrleelkevrvlDlrespellee.lskvnvkk....viegDvtdkdkleealeg....vdvvihlaslvdvagkltedeimkv 91 
                 + G++GF+ +++v +L++ +     +v+  + s+e+ ++ l+++n+++     i  D+   +  +e+  +    ++ v+h+ s     + ++e+ +   
  CCD24405.1   5 ISGATGFIAQHIVAQLLEND----FKVIGSVRSQEKADKlLKQFNNNEnltlEIVKDISLPNAFHEVFAKykgkIKYVLHTSSPFFFDSDDYEKDLLIP 99 
                 68***************988....45555444444444413445555522244555666666555555422222689****99999999999999**** PP

   3Beta_HSD  92 nvkGTrnvleacvka...gvrvlvYtSsaevvgp.nslgeeilngdEeleyesl.......hqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpa 179
                  ++GT+n+l+a +++    v+++v tSs  ++ +   + ++    dE+   +++        ++ay+ sK+ aEk+     + + kn  ++    + p 
  CCD24405.1 100 ALNGTENILNAILDHaadTVERVVITSSEAAMIDiTRYFDPTFFYDENSWNPTSheealinGVHAYTASKKFAEKYAWDFIE-EHKNQIKFALTTVNPC 197
                 ************987333699*******9888772345566655677655555411122225789************99999.7788889999999*** PP

   3Beta_HSD 180 giyGegd...kllvpllkqlaklglalfki....gdeevlsdrvYvgNvawahilAara 231
                  ++G+++   ++++p+   +   ++ + ++    +d+ ++  ++ v  va+ah+lA ++
  CCD24405.1 198 NVFGPQQfdeNVTSPMNTSCEIINKLVHSSvdtkVDRTTMGKFIDVRDVAKAHLLALQN 256
                 *****8432244444444444333333333111155667788999***********975 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.4   3.5e-09   5.7e-06       1     241 [.       4     258 ..       4     281 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 3.5e-09
                    EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEE.EE--TT-HHHHHHHHHHH..T-SEEEE--S---HHHHTT CS
  GDP_Man_Dehyd   1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlkl.hkgDltDssslerllaev..qpdevynLAAqshVdvsfe 93 
                    +i G +Gfi ++++ +Lle++++v+g vr +++      ++l k+  ++++enl+l +  D++  ++ ++++a++  +++ v++     + d    
     CCD24405.1   4 FISGATGFIAQHIVAQLLENDFKVIGSVRSQEKA-----DKLLKQ--FNNNENLTLeIVKDISLPNAFHEVFAKYkgKIKYVLHTSSPFFFDSDDY 92 
                    599***********************98877663.....334332..2234455542345**************9677999999998888876544 PP

                    SHHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGG.............G-S-SSSS.B-TTS-----SHHHHHHHHHHHHHHHHHHH....H CS
  GDP_Man_Dehyd  94 kPeytaevnvlGtlrLLeairalglekkvrfyqaStsEv.............YGkvqevp.qtEttpfyPrsPYaaaKlyadwivvnyrea....y 171
                    + +  +   + Gt ++L+ai ++  ++  r++++S+                Y + +  p  +E+  ++    Y a+K +a+  + ++ e+     
     CCD24405.1  93 E-KDLLIPALNGTENILNAILDHAADTVERVVITSSEAAmiditryfdptffYDENSWNPtSHEEALINGVHAYTASKKFAEKYAWDFIEEhknqI 187
                    4.444445589************9988899999999875233333222222133333334246888899999********9998887766611115 PP

                    ---EEEEEE-EEESTTS-TTSCCCHHHHHHHHHHTTS-C-EEC.TTTT-EEEEEEHHHHHHHHHHHHHCSS CS
  GDP_Man_Dehyd 172 glfavngilfnhesprrgetfvtrkitravarialgkqevlyl.GnldakRdwghvkDyveamwlmlqqdk 241
                    ++  ++ +  n  +p +  + vt  + +    i++  ++ +    +      +  v+D+++a  l+lq+d+
     CCD24405.1 188 KFALTTVNPCNVFGPQQFDENVTSPMNTSCEIINKLVHSSVDTkVDRTTMGKFIDVRDVAKAHLLALQNDN 258
                    567888999*******9988888766655555555445544443566677899999999999999999986 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.8e-09   2.9e-06       1      99 [.       7     128 ..       7     178 .. 0.65
   2 ?   -1.9   0.0       1.6   2.7e+03     160     183 ..     233     256 ..     218     257 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.8e-09
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH....HHHCTTTCEE.EE--TT-CCHHHHHHTT-S....EEEES-......--TCCHHHH... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpekla....eleaeeglev.vegdvtdvedlaealkgad....aVvsal......ggggkdeeg... 77 
                     GAtG +++++v++ll++ +++v   vR++ek++    ++ ++e+l++ ++ d++ +++  e+++ +      V+ +       +      +    
      CCD24405.1   7 GATGFIAQHIVAQLLEN-DFKVIGSVRSQEKADkllkQFNNNENLTLeIVKDISLPNAFHEVFAKYKgkikYVLHTSspfffdS------DDyek 94 
                     9****************.7************98333355677888865556888888888888766531113333333333221......11222 PP

                     .........HHHHHHHH...HHCT--EEEEEEET CS
  NAD_binding_10  78 .........aknivdaa...keagvkRfvlvsai 99 
                              ++ni++a     +  v+R+v+ s+ 
      CCD24405.1  95 dllipalngTENILNAIldhAADTVERVVITSSE 128
                     3455555556666666522234568888887774 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
                     TSS----EEEHHHHHHHHHHHCTX CS
  NAD_binding_10 160 gepfkggsisradVAdvlvavldd 183
                     + +  g+ i  +dVA++ + +l++
      CCD24405.1 233 DRTTMGKFIDVRDVAKAHLLALQN 256
                     444566778888999888877776 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   6.5e-09   1.1e-05       1     216 [.       5     218 ..       5     243 .. 0.70

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 6.5e-09
                    EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHHHHHTTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--S CS
  NAD_binding_4   1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksgesaeeRleeelekkelfsallkelaerikvveGDlseprlGLseedlqelaeevdviihsaA 96 
                    + GaTGF++++++++LL+++   k++  vR++++   +++l +++ ++e    l+      ++ ++ D+s p+     e + +   +++ ++h   
     CCD24405.1   5 ISGATGFIAQHIVAQLLENDF--KVIGSVRSQEK---ADKLLKQFNNNEN---LT------LE-IVKDISLPN--AFHEVFAKYKGKIKYVLHTSS 83 
                    67***************9976..9******9966...4555344443333...32......33.567*****9..468899999************ PP

                    S-S.ST.TSSE.EHHHHHHHHHHHHHHHTSSS--...-EEEEEE..GGGTTS-TTT--SSS-H......HHH--EEEETTTCCCHHHHHHHHHHHH CS
  NAD_binding_4  97 tvnfde.pyke.llrvNveGtrevlelakklkkl..kvllhvST..ayvngeregeveekvyeegekeekldederaklkglpntYeqsKalaEkl 186
                       fd+ +y++ ll + ++Gt+++l+     ++   + ++  S+  a+++ +r+  ++ +++   e++    + e+a  +g+ ++Y+ sK  aEk 
     CCD24405.1  84 PFFFDSdDYEKdLLIPALNGTENILNAILDHAADtvERVVITSSeaAMIDITRY--FDPTFFY-DENSWNPTSHEEALINGV-HAYTASKKFAEKY 175
                    ****986676559999*********97775444433778888886666666666..5455554.334444444444444444.68*********96 PP

                    ....HHHHHHHH---EEEEEE-EEE-.........-SSST--- CS
  NAD_binding_4 187 ....vrearrrsglpvvivRpsiitg.........esktGwin 216
                        ++e++++ ++ ++ v p ++ g         ++++ +++
     CCD24405.1 176 awdfIEEHKNQIKFALTTVNPCNVFGpqqfdenvtSPMNTSCE 218
                    2222666666667778899999888877777555555444444 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.2e-07   0.00036       3      76 ..       3      76 ..       1     136 [. 0.87
   2 ?    1.4   0.1      0.12   1.9e+02     145     170 ..     161     186 ..     156     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.2e-07
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHS CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklg 76
                v++ Ga++ I + i+ +l+++++kv+   rs+ek+ +++k+++++++  l i  D++  ++  ++++k + k++
  CCD24405.1  3 VFISGATGFIAQHIVAQLLENDFKVIGSVRSQEKADKLLKQFNNNENLTLEIVKDISLPNAFHEVFAKYKGKIK 76
                8899****************************************999999999999988888888777766554 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.12
                 TBHHHHHHHHHHHHHHHHHHHHHGGG CS
   adh_short 145 gvaaYsAsKaavagltrslakelapt 170
                 gv aY+AsK + ++++  + +e++++
  CCD24405.1 161 GVHAYTASKKFAEKYAWDFIEEHKNQ 186
                 7889******9999888887777664 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.6e-06    0.0025       1     131 [.       3     130 ..       3     137 .. 0.78
   2 ?    1.6   0.0     0.075   1.2e+02     132     173 ..     159     201 ..     153     203 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.6e-06
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT....T-SEEEE------HHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel..kvdvvfhaAAlKhVPl 92 
                      v+++Ga+G i +++v q+l+++ k i  + ++E++   +++ +    ++++l++e   ++ d+   +  ++++ ++  k+++v+h+        
       CCD24405.1   3 VFISGATGFIAQHIVAQLLENDFKVIGSVRSQEKADKLLKQFN----NNENLTLE---IVKDISLPNAFHEVFAKYkgKIKYVLHTSSPFFFDS 89 
                      78***************************99999888887765....45567445...999************998445899***998777766 PP

                      HHHSHHHHHHHHHHHHHHHHHHHHHT...T-SEEEEEEEGGG CS
  Polysacc_synt_2  93 veenpleaiktNvlgtenvieaaiea...gvkkvvliStDKA 131
                       +++  + +     gten+++a +++    v++vv+ S+  A
       CCD24405.1  90 DDYE-KDLLIPALNGTENILNAILDHaadTVERVVITSSEAA 130
                      5554.4556667888888888876542225888888888766 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.075
                      SS--SHHHHHHHHHHHHHHHGGG--.SSS--EEEEEEE-EETT CS
  Polysacc_synt_2 132 vnPtnvmGatKrlaekllqalakes.eekktkfvvvRfGNVlg 173
                      +n + ++ a+K++aek++  + +e+ ++ k ++++v   NV+g
       CCD24405.1 159 INGVHAYTASKKFAEKYAWDFIEEHkNQIKFALTTVNPCNVFG 201
                      56788999*********99887766034456677777777776 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.3e-06    0.0038       2      48 ..       4      52 ..       3     127 .. 0.83
   2 ?    2.5   0.0     0.056        91     139     197 ..     200     257 ..     162     281 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.3e-06
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S..-SHHHHHHHHSTTEEE CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdt..kselakslkeaGvelv 48
                 + GaTG +++++v+ ll++++kv   vR +    +l+k+++++ + ++
  CCD24405.1  4 FISGATGFIAQHIVAQLLENDFKVIGSVRSQekADKLLKQFNNNENLTL 52
                688**************************99555678899988877666 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.056
                 EEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHHHHHHHHHHHHHHH CS
        NmrA 139 vyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaeeDiGafvikilkdp 197
                 + ++ f en++s++ +      +  + +v  + +  + ++++ +++D++++ + +l++ 
  CCD24405.1 200 FGPQQFDENVTSPMNTSCEIINKLVHSSVDTKVDRTTMGKFI-DVRDVAKAHLLALQND 257
                 446779999999999977777777888999999999999999.******9998888765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.5e-05     0.024       3     142 ..       3     133 ..       2     138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TTT- CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklleem 100
                 ++i G++G ++++++ +l+e+  + +    Rs   +e++++l+++++++ + + e+v+ D+s ++a +++++++k   ++ik v+h+      +++   
  CCD24405.1   3 VFISGATGFIAQHIVAQLLENDFKVIG-SVRS---QEKADKLLKQFNNNeNLTLEIVK-DISLPNAFHEVFAKYK---GKIKYVLHTS-----SPFFFD 88 
                 579****************99776443.3455...56677799999999345666665.***************9...89******86.....455555 PP

                 -HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH- CS
          KR 101 taedleqvlapKvkGawnLhelled...esldffvlfSSiagllg 142
                 +++  + +l p ++G++n+ +++ d   ++++ +v++SS a+++ 
  CCD24405.1  89 SDDYEKDLLIPALNGTENILNAILDhaaDTVERVVITSSEAAMID 133
                 666667899999999999999998867677788899999998875 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.6e-05     0.042       6      47 ..       8      45 ..       3      62 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.6e-05
                   TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC CS
  F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelg 47
                   ++G +++ ++ +ll+++    +++ ++ r++eka++l ++++
     CCD24405.1  8 ATGFIAQHIVAQLLEND---FKVI-GSVRSQEKADKLLKQFN 45
                   58***************...****.99************998 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00018       0.3       2      76 ..       8      81 ..       7     137 .. 0.88
   2 ?   -1.0   0.0      0.67   1.1e+03     187     213 ..     226     252 ..     197     260 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00018
                  TTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHH.SSEEEEEE- CS
  adh_short_C2  2 aasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.vlecDVtdeeqvealveevvekf.gklDilvnn 76
                  a   I+++i+ +l e+  +v+ + +++e+   +++l ++++++  l + + ++ ++ +++ ev +k+ gk+ ++++ 
    CCD24405.1  8 ATGFIAQHIVAQLLENDFKVIGSVRSQEK---ADKLLKQFNNNeNLTLEIVKDISLPNAFHEVFAKYkGKIKYVLHT 81
                  55569********************9999...899999999774699999999999999999999999999999885 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.67
                   HHHHHHHHHSTTSS-B-HHHHHHHHHH CS
  adh_short_C2 187 elleelearaplgrlgtpeevaeaalf 213
                   +  +   +r+ +g+++++++va+a l 
    CCD24405.1 226 SSVDTKVDRTTMGKFIDVRDVAKAHLL 252
                   445566678999999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2339.64
//
Query:       CCD24406.1  [L=656]
Description: hypothetical protein NDAI_0D00920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-232  772.1   6.5   2.4e-232  771.6   6.5    1.2  1  PLA2_B    Lysophospholipase catalytic domain
  ------ inclusion threshold ------
      0.028   14.6   1.2      0.054   13.7   1.2    1.4  1  IBR       IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> PLA2_B  Lysophospholipase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  771.6   6.5  2.7e-236  2.4e-232       1     490 [.      99     585 ..      99     586 .. 0.99

  Alignments for each domain:
  == domain 1  score: 771.6 bits;  conditional E-value: 2.7e-236
      PLA2_B   1 iaiavSGGGyramltgaGvlkAldsRtdnat..glgGlLqsatYlaGlsGgsWlvgslavNnftsvqelskk.keddsvweleksilnpeglelvknik 96 
                 i++a+SGGGyraml+gaG+l+A+d+Rt++a+  glgGlLqs+tYlaGlsGg+Wl+g+la+Nn+tsvq++ ++ + dds+w++++si+n +g +++++++
  CCD24406.1  99 IGVACSGGGYRAMLSGAGMLSAMDNRTEGANehGLGGLLQSTTYLAGLSGGNWLTGTLAWNNWTSVQDIINNmTVDDSIWDISDSIINSGGWNILSSAE 197
                 8***************************99999****************************************************************** PP

      PLA2_B  97 rydeivdevekKkdagfnvsltDiwGralseklve.aeeggvnltlsslkdaekfqeaemplPiivadgrkpgetvinlNatvfEfsPyelgswdakln 194
                 r+d+i+d+v+ K+dagfn+s++D+wGrals+++++ + +ggv++t+s+++da++f+++emp+Pi+vadgr+pg+tvinlNatvfEf+P+e+gswd++ln
  CCD24406.1 198 RWDHISDAVQAKQDAGFNISMADVWGRALSYNFFPsLYRGGVGYTWSTIRDADVFKNGEMPFPISVADGRYPGTTVINLNATVFEFNPFEMGSWDPTLN 296
                 ***********************************99************************************************************** PP

      PLA2_B 195 sFvpveylGtklsnGtvvkkgkcvagfdnaGflmgtsstlFnevlleinstsmlesllkellkkllkdlsedsedisqyapnpfkdaeeenqnatqsiv 293
                 sF++v+ylGt++snG++ ++g cvagfdn+Gf+mgtsstlFn++ll+in+ts l+s++++l++++lkdlsed +di++y+pnpfkdae++ +n+++siv
  CCD24406.1 297 SFTDVKYLGTNVSNGKPINEGTCVAGFDNTGFIMGTSSTLFNQFLLQINNTS-LPSFIRNLATHFLKDLSEDYNDIAIYSPNPFKDAEFIGSNHSKSIV 394
                 ****************************************************.********************************************** PP

      PLA2_B 294 esktLdlvdggedgqniplvpllqkerevdvifaldnsadteeswpdgvslvatyeRvleskqvkgkkfpyvpdqntfvnlgLnkrptffGcDarnltd 392
                 esk L+lvdgged+qniplvpllq+er++dvifaldnsadt+eswpdg+slv+ty+R++   q+++++fpyvpd +tf+nlgLnk+ptffGcDarnltd
  CCD24406.1 395 ESKDLFLVDGGEDNQNIPLVPLLQEERNLDVIFALDNSADTNESWPDGASLVNTYQRQFG-IQGESMTFPYVPDVETFINLGLNKKPTFFGCDARNLTD 492
                 ************************************************************.************************************** PP

      PLA2_B 393 lsatvdestpPlvvylpnekysylsnlstfklsykdseregliengfeaatqdnetdddefaacvacaiirRklerknltlpsecekcFedycwngtv 490
                 l     +++pPl+vy+pn++ys++sn+stfk+sy++ser ++i+ngfea+t++n+tdd++f++cv+cai+rRk++++n tlpsece+cF++ycwngt 
  CCD24406.1 493 L-----SYVPPLIVYIPNTRYSFNSNQSTFKMSYSTSERLNMIKNGFEATTRGNFTDDEDFLGCVGCAIMRRKQQSLNETLPSECERCFTNYCWNGTR 585
                 *.....9*****************************************************************************************95 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.2     6e-06     0.054      13      51 ..     543     582 ..     534     588 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6e-06
         IBR  13 esdpnlkwCprpdCeaiiekseg.cks...vtCskCgfefCfn 51 
                 ++d+++  C   +C  + +k+++ + +   ++C++C +++C+n
  CCD24406.1 543 TDDEDFLGCV--GCAIMRRKQQSlN-EtlpSECERCFTNYCWN 582
                 56888999*9..***6666666662.346689**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4685.04
//
Query:       CCD24407.1  [L=318]
Description: hypothetical protein NDAI_0D00930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-55  186.5   3.1    7.9e-55  186.5   3.1    1.7  2  TAF4      Transcription initiation factor TFIID component TAF


Domain annotation for each model (and alignments):
>> TAF4  Transcription initiation factor TFIID component TAF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.7      0.12   2.2e+03     210     225 ..      37      52 ..      18      63 .. 0.43
   2 !  186.5   3.1   4.4e-59   7.9e-55       1     277 []      64     313 ..      64     313 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.12
        TAF4 210 gggksgaskssssggk 225
                 +++++++sk+++++g+
  CCD24407.1  37 NSSTKSKSKGTVNSGN 52 
                 1222222222222222 PP

  == domain 2  score: 186.5 bits;  conditional E-value: 4.4e-59
        TAF4   1 LnDvlasaGVdLkeEeerLlqssakeasrvseavravvrsekeepfLqknpLqkklaeiakkeglk..............sidpDvlellSlAveerLr 85 
                 ++Dvl+saGVd++eEe++L +s     ++ +++    ++ + ++pfL++++++k++++++ +++ +              ++ p++l+++S A+e++++
  CCD24407.1  64 MQDVLFSAGVDIREEEALLHSSI----NQSKSKTPLDIKIPPHPPFLHPEQVNKFMQRVMLEQQHHqilinqqnykqnpkQKTPEILQMISDACEDYMK 158
                 79******************777....6666788999*************************998889999**************************** PP

        TAF4  86 gLltklivlskhRrrgekskkrtesltsdvrkqLrelaqkekeeeekrqakRieereglekaakdrskgedeeekklkaketakevqkeedekarhraA 184
                 +++t+++v+s+hRr+++k+++     +s+++  Lr++a +ek+eeekr++kRi+  +glek++          e+kl+++et+            hra+
  CCD24407.1 159 DIITNTLVISRHRRKAIKVNT---GRRSEISMILRTMAINEKKEEEKRVKKRIA--LGLEKEDL---------ENKLDSEETL------------HRAS 231
                 ********************6...59****************************..********.........9*********............**** PP

        TAF4 185 NatAlaavgeprkKkyswmsagsgsgggksgaskssssggkglkgk.sgviserGknglrlrerergkritlrDllaaLEqerrtsksallyky 277
                 N+tA +++g  +kK+y+w +++ +   +++ +s++          k +++i++rG+ gl++re+++  +i++rDll+aLE++r + ++ + ++y
  CCD24407.1 232 NVTAGLRAG--SKKQYGWLTSSVNKPTNTTVKSAG----------KvAAEIAARGELGLKFREAREEPGIVMRDLLFALENRRIGVHNVISKGY 313
                 *********..********9999844444444433..........4457899************************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1433  (0.0799264); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2496.19
//
Query:       CCD24408.1  [L=223]
Description: hypothetical protein NDAI_0D00940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-29  102.8   0.8    3.2e-29  101.3   0.8    1.8  1  MINDY_DUB  MINDY deubiquitinase
    0.00068   17.8   0.8    0.00094   17.3   0.8    1.2  1  Dicty_REP  Dictyostelium (Slime Mold) REP protein
  ------ inclusion threshold ------
      0.014   15.2   0.0        3.4    7.8   0.0    2.9  2  EF-hand_6  EF-hand domain
      0.018   14.6   0.0        1.3    8.7   0.0    2.7  2  EF-hand_1  EF hand
       0.04   14.0   0.5      0.082   13.0   0.1    1.7  2  UPF0240    Uncharacterised protein family (UPF0240)
      0.062   12.8   0.1        8.3    6.1   0.0    2.6  2  EF-hand_5  EF hand
      0.085   12.8   1.2       0.14   12.1   1.2    1.4  1  DUF3439    Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> MINDY_DUB  MINDY deubiquitinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.8   1.3e-32   3.2e-29      16     116 ..     104     202 ..      46     203 .. 0.91

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 1.3e-32
   MINDY_DUB  16 dreevsleeLlelladilldnnp...lnqeenlsellelLpklqtgldvnprFdgidsFektselalFdllnipLvHGwlvdpqdaeaaealsaksYne 111
                 ++ +vsleeL+++la+ +l+ n+   +++++++++ll+lLp+l+tgl++nprFdg  +Fe+++el++F+l++ipLvHGw++d +   ++ a+ + sY++
  CCD24408.1 104 KNGKVSLEELIQILANNALQGNTledQDYQNDVDQLLHLLPQLHTGLNINPRFDG--TFEDSKELSIFRLFGIPLVHGWVIDHD---KYPAIYHLSYED 197
                 4567*******************988889999***********************..*************************95...8*********** PP

   MINDY_DUB 112 avell 116
                 a++ l
  CCD24408.1 198 AQNIL 202
                 **987 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.8   3.7e-07   0.00094     228     307 ..      52     133 ..      25     142 .. 0.55

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.7e-07
   Dicty_REP 228 eesdieqesiesentqrensqpske..knkttttttttttttsqartrkrkaidddklse.nqakekkknskksdddpqsdfs 307
                 ++++i++  +++++  ++ +++++   +++ttttttttttt+++   +k+k ++  k+s  ++ ++  +n+ + ++  ++d++
  CCD24408.1  52 SSNEISSLGVVTKQELKKLISKDSIpiTAATTTTTTTTTTTENEDGIKKKKVKN-GKVSLeELIQILANNALQGNTLEDQDYQ 133
                 456677777777777766666655411344555555555555555555555544.5554403333333333333333333333 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.024        61      15      28 ..      60      73 ..      59      80 .. 0.90
   2 ?    7.8   0.0    0.0013       3.4      13      27 ..     104     118 ..     102     124 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.024
   EF-hand_6 15 GkidaeElrkalrk 28
                G ++++El+k+++k
  CCD24408.1 60 GVVTKQELKKLISK 73
                89********9985 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0013
   EF-hand_6  13 gdGkidaeElrkalr 27 
                 ++Gk++ eEl+++l 
  CCD24408.1 104 KNGKVSLEELIQILA 118
                 79***********96 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.037        95      15      28 ..      60      73 ..      60      74 .. 0.89
   2 ?    8.7   0.0    0.0005       1.3      13      27 ..     104     118 ..     104     120 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.037
                SEEEHHHHHHHHHH CS
   EF-hand_1 15 GkIdfeEfkellkk 28
                G ++++E+k+l++k
  CCD24408.1 60 GVVTKQELKKLISK 73
                89*******99875 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0005
                 SSSEEEHHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkellk 27 
                 ++Gk+++eE++++l+
  CCD24408.1 104 KNGKVSLEELIQILA 118
                 79**********996 PP

>> UPF0240  Uncharacterised protein family (UPF0240)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   3.2e-05     0.082      70     137 ..      61     127 ..      37     137 .. 0.67
   2 ?   -2.0   0.0       1.2   3.2e+03     146     158 ..     191     203 ..     183     217 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.2e-05
     UPF0240  70 VeSkdpvkaaeaeqkekkkeerrlpkkrekvedeefgllepekvpkGkltlrealellsnhqkdpekw 137
                 V +k+  k+  ++++ + ++ +  + + +++ ++e   ++ +kv++Gk++l+e +++l+n++ + ++ 
  CCD24408.1  61 VVTKQELKKLISKDSIPITAATTTTTTTTTTTENED-GIKKKKVKNGKVSLEELIQILANNALQGNTL 127
                 444444433334444444333333333333333444.47799******************99888776 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
     UPF0240 146 YkLeekdvksllk 158
                 Y+L+ +d++++l+
  CCD24408.1 191 YHLSYEDAQNILT 203
                 8888888888874 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.014        36      14      24 ..      60      70 ..      60      71 .. 0.90
   2 ?    6.1   0.0    0.0032       8.3      12      24 ..     104     116 ..     104     117 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.014
                SCE-HHHHHHH CS
   EF-hand_5 14 GkIskeELktl 24
                G ++k+ELk+l
  CCD24408.1 60 GVVTKQELKKL 70
                89*******97 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0032
                 -SSCE-HHHHHHH CS
   EF-hand_5  12 gDGkIskeELktl 24 
                 + Gk+s eEL ++
  CCD24408.1 104 KNGKVSLEELIQI 116
                 57********875 PP

>> DUF3439  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.2   5.6e-05      0.14      44      58 ..      79      92 ..      55     121 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.6e-05
     DUF3439 44 icptttttttttttt 58
                   t tttttttttt
  CCD24408.1 79 TAAT-TTTTTTTTTT 92
                2222.2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1624.35
//
Query:       CCD24409.1  [L=173]
Description: hypothetical protein NDAI_0D00950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.33    9.2   9.0       0.38    9.0   9.0    1.1  1  CDC45          CDC45-like protein
        0.7   10.6   9.7        1.3    9.8   9.7    1.4  1  TbpB_A         N-Lobe handle Tf-binding protein B
        8.6    5.4  14.0         10    5.2  14.0    1.1  1  SprA-related   SprA-related family


Domain annotation for each model (and alignments):
>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   9.0   6.4e-05      0.38     138     220 ..      84     165 ..      31     171 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 6.4e-05
       CDC45 138 eeeeeddddeeeeeeeeedeedeeedeeeskkkrk..sksdeeee.sddddersrkrrrsepsakklrrqlkkerrkyeavlekyy 220
                  ee+e+++++++eeee++++++ +e+e ++ ++++  +k+ +e+e ++  +++++k+ r    +k+ r+q+ k   +y+++++k+ 
  CCD24409.1  84 TEEQEQEQEQGQEEEEDTSRRTLNEEEIHQIENDEllAKQLQEDEdHHIGNTQKEKKIR----EKSNRKQQIKVMYQYQNRITKNK 165
                 23333333333333333333333333333333333332222222212222233333333....34667778888888888877765 PP

>> TbpB_A  N-Lobe handle Tf-binding protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   9.7   0.00022       1.3      34      95 ..      93     157 ..      81     158 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00022
      TbpB_A  34 iapkdeegeeevplseediekvedellkipkeke.vkkksdeke..sfvhshdgskksrkrdyqY 95 
                   +++ee ++++ l+ee+i ++e+++l +++++e ++  +++++  + ++ +++ k++ k  yqY
  CCD24409.1  93 QGQEEEEDTSRRTLNEEEIHQIENDELLAKQLQEdEDHHIGNTQkeKKIREKSNRKQQIKVMYQY 157
                 4455666667*****************99999997455555554338888888888888888888 PP

>> SprA-related  SprA-related family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  14.0    0.0017        10     118     192 ..      87     161 ..      57     167 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0017
  SprA-related 118 kekeqqkkdeqsqqerekvaqeqkqkqvfaketqeSnaqqsqeEnd..iaktreqekireqekqaae.kaieaqkaqv 192
                   +e+eq + +e++++  +   +e++ +q    e++e  a+q qe++d  i +t++++kire+ ++ ++ k + + + ++
    CCD24409.1  87 QEQEQEQGQEEEEDTSRRTLNEEEIHQ---IENDELLAKQLQEDEDhhIGNTQKEKKIREKSNRKQQiKVMYQYQNRI 161
                   344444444444444444445555555...788999999999998844678999999999877655426666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2396  (0.133638); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1325.67
//
Query:       CCD24410.1  [L=151]
Description: hypothetical protein NDAI_0D00960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1798  (0.100284); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1148.80
//
Query:       CCD24411.1  [L=531]
Description: hypothetical protein NDAI_0D00970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-19   68.5   2.0    3.2e-19   68.5   2.0    2.9  3  NUFIP1    Nuclear fragile X mental retardation-interacting pr


Domain annotation for each model (and alignments):
>> NUFIP1  Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.9       0.3   5.3e+03      15      22 ..     192     199 ..     177     205 .. 0.47
   2 ?   -2.8   0.2      0.33   5.9e+03       5      18 ..     273     291 ..     272     296 .. 0.54
   3 !   68.5   2.0   1.8e-23   3.2e-19       3      53 .]     353     403 ..     351     403 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.3
      NUFIP1  15 leTpeeIa 22 
                   T e I+
  CCD24411.1 192 NTTVEKIQ 199
                 44445554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.33
      NUFIP1   5 nvkiegtsit.....leTp 18 
                 n++ egt+ +      +T+
  CCD24411.1 273 NEHGEGTNTIitgkkRKTE 291
                 6777777433244444455 PP

  == domain 3  score: 68.5 bits;  conditional E-value: 1.8e-23
      NUFIP1   3 eknvkiegtsitleTpeeIakWreERkKnyPtkaniekkkkkeeekkkrge 53 
                  ++++i+gtsitl T+e+I+kWreER+K++++k++++k k++  +++k++e
  CCD24411.1 353 SNPTTIPGTSITLLTEEDIEKWREERRKMWLLKISNNKIKHMASMGIKEDE 403
                 6899********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2261  (0.126109); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3691.42
//
Query:       CCD24412.1  [L=725]
Description: hypothetical protein NDAI_0D00990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-10   38.4   0.1    1.9e-09   37.2   0.1    1.7  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
     0.0022   17.6   0.0     0.0091   15.6   0.0    2.0  2  RRM_5     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.1   2.1e-13   1.9e-09       1      60 [.     350     402 ..     350     413 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 2.1e-13
                 EEEESET.TTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHT CS
       RRM_1   1 lfVgnLp.pdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealn 60 
                 lf+gnLp ++v++e+L ++Fs++G i  i++ +        ++f++++++ + ++A+e l 
  CCD24412.1 350 LFIGNLPlKNVSKEDLFRIFSPYGHILQINIKN-------AYGFIQYNNPQSVKDAIE-LE 402
                 8*****658************************.......6****************9.43 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     1e-06    0.0091      26     103 ..     347     421 ..     326     440 .. 0.87
   2 ?   -2.3   0.0      0.34   3.1e+03      96     123 ..     528     555 ..     510     556 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1e-06
       RRM_5  26 gsVllVyglepdkvnldklFnlfclYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlevalSKqqa 103
                  s l++ +l  ++v  + lF +f+ Yg + ++ +   k+ + ++q  + ++v+ a++  +n+  f k+l + +S  ++
  CCD24412.1 347 KSRLFIGNLPLKNVSKEDLFRIFSPYGHILQINI---KNAYGFIQYNNPQSVKDAIELESNEMNFSKKLILEVSSSNS 421
                 5678899**********************99987...88999***************9999999*****999997665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.34
       RRM_5  96 valSKqqavsekepfeleddspsfkdfs 123
                 v l K ++v  +  ++++ +++ f +++
  CCD24412.1 528 VFLNKSRNVDIQTFYKGPRGETKFDEYI 555
                 4567888887799999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2274  (0.126834); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                       230  (0.0128284); expected 17.9 (0.001)
Passed Fwd filter:                        94  (0.0052429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.01u 0.43s 00:00:02.44 Elapsed: 00:00:00.59
# Mc/sec: 3713.03
//
Query:       CCD24413.1  [L=450]
Description: hypothetical protein NDAI_0D01000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-98  327.4  10.7    8.5e-98  326.7  10.7    1.3  1  SUN       Beta-glucosidase (SUN family)


Domain annotation for each model (and alignments):
>> SUN  Beta-glucosidase (SUN family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.7  10.7  4.7e-102   8.5e-98       1     245 []     195     437 ..     195     437 .. 0.97

  Alignments for each domain:
  == domain 1  score: 326.7 bits;  conditional E-value: 4.7e-102
         SUN   1 dgkikCsefpsdeglvavdalglgGwagiqdvkge.sqeCkegsyCsyaCppGylktqwpsaqgatgssvGGLyCnkdGklektnkdskklCekgagkv 98 
                 dg+i C++fps++g+++vd+l+++Gw+gi++++ + + +C egsyCsyaC+pG++ktqwps+q+a+g+s+GGL+C k+G l+++n+ds++lCe+g +++
  CCD24413.1 195 DGTIPCDQFPSGQGVISVDWLDTNGWSGIENTDKStGGSCAEGSYCSYACQPGMSKTQWPSEQPADGRSIGGLLC-KNGFLYRSNTDSNYLCEWGIEAA 292
                 689****************************88777889************************************.7********************** PP

         SUN  99 kvknklsksvavCrTdyPGtEamlipteveagssaelavpdedtyykwkgkktsaqYYvNkaGvsvedaCvWgseskpvGNwaplvlGagkdedgktyl 197
                 +v++++++ va+CrTdyPGtE+m+ipt veag+s +l+v+d+d+yy+w+g+ktsaqYYvN+aGvsved+CvWg++++ vGNwapl++Gag+++ g  yl
  CCD24413.1 293 EVVSEIDQGVAICRTDYPGTENMVIPTFVEAGNSLPLTVVDQDSYYTWRGMKTSAQYYVNNAGVSVEDGCVWGTDGSGVGNWAPLNFGAGYTN-GIGYL 390
                 ********************************************************************************************9.***** PP

         SUN 198 sifqNptskeklnfnvkieae.egdsvsgkCkyesgklskgggadgCtv 245
                 s+++Np++k+ lnfnvki+a+ +++ v g+C ye+g++++g  +dgCtv
  CCD24413.1 391 SLIPNPNNKSPLNFNVKIVAAdDNSVVDGTCYYENGSFVNG--EDGCTV 437
                 ******************9986788899***********66..99**98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 3628.09
//
Query:       CCD24414.1  [L=422]
Description: hypothetical protein NDAI_0D01010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.24   11.7   1.6       0.42   10.9   1.6    1.3  1  DUF5426   Family of unknown function (DUF5426)


Domain annotation for each model (and alignments):
>> DUF5426  Family of unknown function (DUF5426)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.6   2.4e-05      0.42      55     114 ..      87     146 ..      85     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.4e-05
     DUF5426  55 fqkienafqklanivffietqvnellgllleresikeekeperifetvkleavvvlekee 114
                 +++++++ + +ani+ f ++  n++l+++le+e ++ ek +e+  +t +  + + ++ ++
  CCD24414.1  87 LKDLDIDQEVIANIHSFDDETFNKYLSIILEKERKNIEKIKETNLNTLNQIIDKCIQSDD 146
                 5778889999**************************************999999999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1519  (0.0847231); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 2921.94
//
Query:       CCD24415.1  [L=592]
Description: hypothetical protein NDAI_0D01020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-39  134.4  15.5    4.4e-39  134.4  15.5    1.5  2  MFS_1     Major Facilitator Superfamily
    4.5e-16   58.8   9.6    1.8e-15   56.8   3.9    2.5  2  Sugar_tr  Sugar (and other) transporter
    8.4e-05   21.2   2.7    0.00013   20.5   2.7    1.2  1  TRI12     Fungal trichothecene efflux pump (TRI12)
     0.0026   16.8   0.3     0.0048   15.9   0.3    1.4  1  MFS_5     Sugar-tranasporters, 12 TM
  ------ inclusion threshold ------
       0.21   12.0   0.9         37    4.9   0.6    3.1  2  DUF4231   Protein of unknown function (DUF4231)
       0.78   10.0   0.0       0.78   10.0   0.0    3.5  3  DUF3784   Domain of unknown function (DUF3784)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4  15.5   1.5e-42   4.4e-39       2     352 ..     108     512 ..     107     513 .. 0.85
   2 ?   -2.8   0.4      0.75   2.3e+03     280     297 ..     524     541 ..     518     554 .. 0.51

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 1.5e-42
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 ++++f s+l++ i++pal   l +++++++  ++  +++y l++++a  + G l+d fGrr+++l g+++++++++ l+ +++++ ++++lr++q++g 
  CCD24415.1 108 VMCGFWSSLGSPIYYPALR-QLEKEFNMDENKVNVTVVVYLLFQGIAPTVSGGLADVFGRRPIILGGMVIYVVASIGLA-CAPSYgVICFLRCIQSIGI 204
                 68999999***********.8*****************************************************55555.355555************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.......... 188
                 +  ++++  ++ d + k erg  +g  s+ + lG  +g l+g++l++ + Wra+f++lai s +a++++++ lpe++++   + +++ +          
  CCD24415.1 205 SPTIAISSGVVGDFTLKHERGTFVGATSGLVLLGQCFGSLIGAVLTARWDWRAIFWFLAIGSGVALIVAAFTLPETKRTIVGNLSIKPKnilnrapvfl 303
                 ****************************************************************************************99999999999 PP

       MFS_1 189 ...................kgtgpaplvpawkallkdpvlwillialllfffgfsg....lltllplylqevlglsglllaglllallalvgailalla 264
                                    k   +  l++a+k+   +     +l++l+ +++ f++    l++ + ++    +++  l ++g+ +  ++++g+ +++l+
  CCD24415.1 304 lkpvqkrfkydnpdyetldKTIPRLDLASAFKICALPE----ILLSLFPAGLQFALwtlmLSSISSTLSAPPYNYR-LTIIGVCYLPGGVGGLLGSMLT 397
                 99999999999888888877777777777999999999....6666666655555532234444444556666666.8888888888888888889999 PP

       MFS_1 265 grlsdr.............lgr............rrrlllallllllaalglallavtssavllllvlvl....iGfglgfvfpsllalasdlappeea 334
                 gr++d                +            + rl+ +++  ++a+++++l++++ ++ + + ++++     +f++  + +s+++l++dl+p ++a
  CCD24415.1 398 GRFLDYiykkalrdfekkkQ-NgtipeneefntiKVRLNAIIPQNFIAVISFLLFGWSADKGWKIPAMLItscvSSFCAMSTLSSSTTLLVDLYP-KKA 494
                 99999987777777665550.055556666666899******************************88885664555555569999999999997.9** PP

       MFS_1 335 gtasglfntagslggalg 352
                  tas+ fn++++  ++++
  CCD24415.1 495 STASSCFNFIRCSLSSIF 512
                 ************666654 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.75
       MFS_1 280 allllllaalglallavt 297
                 ++++++++ +gl+l++++
  CCD24415.1 524 TVGGTFTFMVGLILVGNF 541
                 444444444444444433 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   3.9   6.1e-19   1.8e-15      47     198 ..     138     284 ..      68     298 .. 0.86
   2 !    4.9   0.3    0.0033       9.9      88     435 ..     446     545 ..     433     588 .. 0.60

  Alignments for each domain:
  == domain 1  score: 56.8 bits;  conditional E-value: 6.1e-19
                 HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHH CS
    Sugar_tr  47 lsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyql 145
                  + ++v ++l+ + i   ++g l+d+fGR++++l + v++v++++  a+a+   s+ v+++ R +  ig+  + ++++  ++ ++ k+ Rg++v+ +  
  CCD24415.1 138 KVNVTVVVYLLFQGIAPTVSGGLADVFGRRPIILGGMVIYVVASIGLACAP---SYGVICFLRCIQSIGISPTIAISSGVVGDFTLKHERGTFVGATSG 233
                 4567788888888888899999*****************************...********************************************* PP

                 HHHHHHHHHHHHHHHHHTSS-TTHHHHHHH.CCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 146 aitfGilvaaifglglnktsnadgwrillg.lqlvpallllilllflPESPryl 198
                  + +G+ +++ +g++l      + wr  ++ l++ + ++l+++ ++lPE++r  
  CCD24415.1 234 LVLLGQCFGSLIGAVLTAR---WDWRAIFWfLAIGSGVALIVAAFTLPETKRTI 284
                 *************999655...55**888725666889999999******9955 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0033
                 HHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHH CS
    Sugar_tr  88 igavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpalllli 186
                 i+ +l ++                                                                                           
  CCD24415.1 446 ISFLLFGW------------------------------------------------------------------------------------------- 453
                 33333333........................................................................................... PP

                 HGGGS---HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.....HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS CS
    Sugar_tr 187 lllflPESPrylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeeekaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlg 285
                                                                                                                    
  CCD24415.1   - ---------------------------------------------------------------------------------------------------   -
                 ................................................................................................... PP

                 -THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTH CS
    Sugar_tr 286 lsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvR 384
                                                                          +++k+++i a+  +  +  + a++  +    l+ +l+p++  
  CCD24415.1 454 ---------------------------------------------------------SADKGWKIPAMLITSCVSSFCAMSTLSSSTTLLVDLYPKKA- 494
                 .........................................................33355555555555555666666666666666666666654. PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 385 skalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvff 435
                 s+a+++  ++    + +   +f  +  a++ g++f + +gl +++ + +++
  CCD24415.1 495 STASSCFNFIRCSLSSIFMGCFAKMKFAMTVGGTFTFMVGLILVGNFLMLI 545
                 333444444444444444445555555555566666666666665555544 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   2.7   4.4e-08   0.00013      77     215 ..     135     273 ..     118     298 .. 0.74

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.4e-08
       TRI12  77 senss.lfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfnt..llaamtllgvaagpagasplfvgelm..snktkflglli 170
                  en+  +   ++ + q ++  v g l+d fgrrp+++   ++ +v +i  + a  +    +l ++  +g++   a +s  +vg++    ++  f+g   
  CCD24415.1 135 DENKVnVTVVVYLLFQGIAPTVSGGLADVFGRRPIILGGMVIYVVASIGLACAPSYGVicFLRCIQSIGISPTIAISSG-VVGDFTlkHERGTFVG--A 230
                 5555413345677889999999********************9999997767777765115677777777777776665.6887651155666776..5 PP

       TRI12 171 vsipvvvtsglspylgqrlaiqgswrwifyiyiitsaiavllivv 215
                  s  v+  ++ +  +g  l+ + +wr if+   i s +a++  v 
  CCD24415.1 231 TSGLVLLGQCFGSLIGAVLTARWDWRAIFWFLAIGSGVALI--VA 273
                 67788888999************************998854..33 PP

>> MFS_5  Sugar-tranasporters, 12 TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3   1.6e-06    0.0048      29     136 ..      91     205 ..      79     252 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-06
       MFS_5  29 dpkfkafkrtyllvyslavagdw..lqgpyvya.....lyesygldkgdieilfiagfgssllfgtivgsladkfgrkracltyailyilacit.khsg 119
                   ++ ++k+++ +v+ l+++g w  l  p +y+     l +++ +d +++++  +  +    +  t+ g lad fgr+   l   + y++a i     +
  CCD24415.1  91 PYTLLSYKQKWGMVFLLVMCGFWssLGSP-IYYpalrqLEKEFNMDENKVNVTVVVYLLFQGIAPTVSGGLADVFGRRPIILGGMVIYVVASIGlACAP 188
                 335779*****************543444.443333337889*********99999988888999************************9999724578 PP

       MFS_5 120 eykvlmigrvlggiats 136
                  y v+   r +  i  s
  CCD24415.1 189 SYGVICFLRCIQSIGIS 205
                 89998888888766554 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.6     0.012        37      19      64 ..     233     276 ..     219     280 .. 0.86
   2 ?    3.7   0.0     0.028        82       8      82 ..     495     562 ..     487     568 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.012
     DUF4231  19 llrlitivlgallpilvssklgagvsvlkiltallsalvailaale 64 
                 +l l+  ++g l+ ++ +   +++++++ ++ a+ s ++ i+aa++
  CCD24415.1 233 GLVLLGQCFGSLIGAVLT--ARWDWRAIFWFLAIGSGVALIVAAFT 276
                 566778899999999999..899999999999999*******9986 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.028
     DUF4231   8 kkasrakrrfrllrlitivlgallpilvssklgagvsvlkiltallsalvailaaleeffrykerWrryRstaEs 82 
                 ++as+++++ r ++l +i++g ++ +  +       +v   +t++++++++    +   ++y+  Wrr R++ E+
  CCD24415.1 495 STASSCFNFIR-CSLSSIFMGCFAKMKFA------MTVGGTFTFMVGLILVGNFLMLIPMKYGMEWRREREAKEQ 562
                 46777788777.88999999988888777......4666666666666555555555668999999999999997 PP

>> DUF3784  Domain of unknown function (DUF3784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00026      0.78      34      86 ..     131     184 ..     122     187 .. 0.89
   2 ?   -1.5   0.6      0.98   2.9e+03      54      89 ..     240     272 ..     228     281 .. 0.46
   3 ?    0.7   1.6      0.21   6.2e+02      39      85 ..     492     538 ..     487     546 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00026
     DUF3784  34 kekydekklsrfmgivllligilflllgll.saiesealliialiviiiiviyl 86 
                   ++de+k+   + ++ll+ gi+  ++g l + +++  +++++++++++++i+l
  CCD24415.1 131 EFNMDENKVNVTVVVYLLFQGIAPTVSGGLaDVFGRRPIILGGMVIYVVASIGL 184
                 4489*******************99999988999***************99987 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.98
     DUF3784  54 gilflllgllsaiesealliialiviiiiviylivy 89 
                 +   l+ ++l   +  + + +++ ++ i++ +++++
  CCD24415.1 240 CFGSLIGAVL---TARWDWRAIFWFLAIGSGVALIV 272
                 4445555555...22222222222333333333333 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.21
     DUF3784  39 ekklsrfmgivllligilflllgllsaiesealliialiviiiiviy 85 
                 +k+ +  ++  ++ +++  + +g++++++ ++++ +++ ++++++++
  CCD24415.1 492 KKASTASSCFNFIRCSLSSIFMGCFAKMKFAMTVGGTFTFMVGLILV 538
                 66667777888888888899999994444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 3965.33
//
Query:       CCD24416.1  [L=411]
Description: hypothetical protein NDAI_0D01030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-40  137.1   0.2    6.1e-40  136.7   0.2    1.1  1  DnaJ_C         DnaJ C terminal domain
    4.5e-27   94.0   1.9    7.2e-27   93.3   1.9    1.3  1  DnaJ           DnaJ domain
    9.8e-16   57.9  16.9    1.7e-15   57.1  16.9    1.4  1  DnaJ_CXXCXGXG  DnaJ central domain
  ------ inclusion threshold ------
       0.11   12.9   0.3       0.65   10.4   0.1    2.2  2  DUF2277        Uncharacterized conserved protein (DUF2277)
       0.24   11.4  11.6          2    8.5   2.3    2.4  2  HypA           Hydrogenase/urease nickel incorporation, metal


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   0.2   1.7e-43   6.1e-40       1     148 []     118     338 ..     118     338 .. 0.95

  Alignments for each domain:
  == domain 1  score: 136.7 bits;  conditional E-value: 1.7e-43
                 EEEEEEE-HHHHHH-.EEE.EEEE..........................................................................T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................xxxxx RF
      DnaJ_C   1 ieveleisleelykGktkkikikrnvi...................................................................kkekk 32 
                 i++el+ +leelykG t k++++++                                                                     ++e+k
  CCD24416.1 118 IKHELSATLEELYKGRTAKLALNKQILcktcegrggkkgavkkcsscngqgvkfvtrqmgpmlqrfqaecevchgtgdiidpkdrcktcnakkvTNERK 216
                 689********************9988*****************************************************************9877888 PP

                 EEEEEE-TT--TT-EEEETT-SSSS...S---EEEEEEE---SS-EEETTEEEEEEEEEHHHHHHTEEEEEE-SS-E.EEE.....EE--TT-EEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.....xxxxxxxxxxxxx RF
      DnaJ_C  33 tlevkipaGikdgqkirlegeGdeeg.gepGDlivtikvkphpvFkrkgndlyveveislaeallGgklevptldgk.vkl.....kitqpgevlrikg 124
                 +lev+i++G+kdgqk++++ge+d+ +   pGD+i+++++kph++F+r g+dl++e+ei+l +a+ Gg++ ++ ++g+  k+     ++++pg  + i++
  CCD24416.1 217 ILEVHIEPGMKDGQKVVFKGEADQAPdIIPGDVIFVVSQKPHEHFQRAGDDLVYEAEIDLLTAIAGGEFAIKHVSGEwLKVaivpgEVISPGARKIISD 315
                 ***********************9999******************************************9999955413444478888*********** PP

                 -S-EET...TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C 125 kGmpklkkpgkrGdlyvevkvefP 148
                 kGmp+ k  g++G+l+v+++++fP
  CCD24416.1 316 KGMPIPK-YGGYGNLIVKFNIKFP 338
                 ******8.***************9 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   1.9     2e-30   7.2e-27       2      63 .]       7      67 ..       6      67 .. 0.96

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 2e-30
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +Y+iLgvs++as++eIkkaYrk alkyHPDkn  ++ea+ekFke ++AyevLsd+ekR++YD
  CCD24416.1  7 FYDILGVSPSASSSEIKKAYRKFALKYHPDKN-PSEEAAEKFKEASAAYEVLSDDEKREMYD 67
                8*******************************.66679***********************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1  16.9   4.7e-19   1.7e-15       1      66 [.     145     209 ..     145     210 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 4.7e-19
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgkkktCktCkGsG.vvreeqktlgpfvqqsqstCpeCeGtGkvikekdkCkkCkGk 66 
                    Ck+C+G+g kkg++k+C++C+G+G + +++q  +gp+ q++q +C+ C+GtG +i++kd+Ck+C+ k
     CCD24416.1 145 CKTCEGRGGKKGAVKKCSSCNGQGvKFVTRQ--MGPMLQRFQAECEVCHGTGDIIDPKDRCKTCNAK 209
                    ************************4456665..99*****************************987 PP

>> DUF2277  Uncharacterized conserved protein (DUF2277)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00018      0.65      10      51 ..      12      53 ..       6      61 .. 0.91
   2 ?   -0.6   0.0      0.48   1.7e+03       4      24 ..     347     367 ..     346     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
     DUF2277 10 nlePpateeeiraAAlqyVRKvsGvrkpsaaneeaferAvee 51
                ++ P a++ ei+ A +++  K    ++ps++++e f++A ++
  CCD24416.1 12 GVSPSASSSEIKKAYRKFALKYHPDKNPSEEAAEKFKEASAA 53
                789**********************************99775 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.48
     DUF2277   4 nIktLrnlePpateeeiraAA 24 
                 ++k+L ++ Pp t+ +i + A
  CCD24416.1 347 SLKKLEEILPPRTKTNIPEGA 367
                 578999999999999998766 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.0   0.00085       3.1      69     101 ..     141     173 ..     120     177 .. 0.83
   2 ?    8.5   2.3   0.00055         2      68      98 ..     182     212 ..     175     223 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00085
                 -EEEETTTS-EEECHHHHHS-TTTSSS-EEEEE CS
        HypA  69 vkvrCreCgkefeleekalrCpkCgsadveivs 101
                  ++ C++C+ ++ ++ +  +C +C++++v++v+
  CCD24416.1 141 KQILCKTCEGRGGKKGAVKKCSSCNGQGVKFVT 173
                 5789*****99998876679********99876 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00055
                 --EEEETTTS-EEECHHHHHS-TTTSSS-EE CS
        HypA  68 pvkvrCreCgkefeleekalrCpkCgsadve 98 
                 + +++C++C+ ++++ + + rC++C++++v+
  CCD24416.1 182 RFQAECEVCHGTGDIIDPKDRCKTCNAKKVT 212
                 5789**********7754679******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3037.37
//
Query:       CCD24417.1  [L=458]
Description: hypothetical protein NDAI_0D01040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-99  332.7   1.7    2.2e-99  332.4   1.7    1.1  1  Gcd10p          Gcd10p family
  ------ inclusion threshold ------
      0.023   14.8   0.7       0.71   10.0   0.0    2.5  2  Mrr_N           Mrr N-terminal domain
       0.21   12.2   1.4        1.1    9.9   0.0    2.5  2  RPA_interact_M  Replication protein A interacting middle
       0.23   11.9   1.6       0.67   10.4   1.6    1.8  1  Linker_histone  linker histone H1 and H5 family
       0.98    9.6   4.1        1.5    9.0   3.4    1.6  1  CREPT           Cell-cycle alteration and expression-elevated


Domain annotation for each model (and alignments):
>> Gcd10p  Gcd10p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.4   1.7  6.1e-103   2.2e-99       1     300 []       6     310 ..       6     310 .. 0.92

  Alignments for each domain:
  == domain 1  score: 332.4 bits;  conditional E-value: 6.1e-103
      Gcd10p   1 lIkpndhvllkLpsenlkivqvkpnttisLgKfgsfplnliigrpygltfeildkreeeeks..............rlrvvpaaeleaeslaeeeaeee 85 
                 +I +++hv++kLps+n k+vq+kp+t+isLgKfg+f++n+iig+p+g++feil++ +e+e++              +++v+       ++++++e e  
  CCD24417.1   6 TICAEQHVIIKLPSDNNKLVQLKPDTSISLGKFGAFNVNDIIGYPLGTKFEILYDGDEKEEQvpatgkfkykiptgKIKVL------DDDVEKTEGERL 98 
                 5899****************************************************9988886777766554443333333......444444444555 PP

      Gcd10p  86 eeeeearsnreiiddga.rQkLtkeeIeeLKkegtsagkeiIaklleshtafdqKTaFSqeKYlkrKkkKYlkrftvlpldvsllleyllekkdaqkil 183
                 e+  ++++n+++++ g+  QkL++eeIe+LK++++s ++eiI+k++esh +fd+KT++SqeKYlkrKk+K+ k ftv++l++s+ll++l++k d+q+i+
  CCD24417.1  99 ENVVNSENNQHLVNLGNeVQKLSAEEIEALKEKSVS-SSEIISKMIESHGSFDKKTVYSQEKYLKRKKQKFDKIFTVDYLSSSALLQFLIDKGDIQRIM 196
                 55566*********7777******************.************************************************************** PP

      Gcd10p 184 elreetlglllslanvhaggryLvvDdtgGLlvaalaeRmgif.essakegtivliheneqpnlsllkyfnydaaepehplkkhlktlswlqllepeed 281
                 ++++e++++ll+lan++ +g+yL++D+tgGLlv++l+eRm++  ++s++ g+i+++hene+pnl+llk++ny    +e+++++h+ t+s+l+++ep + 
  CCD24417.1 197 DMSQESVAMLLNLANIKENGNYLCMDETGGLLVYFLLERMFGGdDKSKSPGKIIVVHENEHPNLDLLKFSNY----SESFINEHVITISLLEFFEPPTI 291
                 *******************************************9****************************....9********************** PP

      Gcd10p 282 etyeeepeevseeelaelk 300
                 e+ ++ ++++s++el +lk
  CCD24417.1 292 EDINKGFTPLSKDELYQLK 310
                 *************998876 PP

>> Mrr_N  Mrr N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.045   1.6e+02       9      50 ..     125     168 ..     118     185 .. 0.68
   2 ?   10.0   0.0    0.0002      0.71      30      61 ..     297     328 ..     290     338 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.045
       Mrr_N   9 Lealadgsehrlkeirervaerf....glseeeraellpsgkqtrf 50 
                 +eal+++s+++ +ei+++++e+     + + + ++++l+  kq +f
  CCD24417.1 125 IEALKEKSVSS-SEIISKMIESHgsfdKKTVYSQEKYLKRKKQ-KF 168
                 799*******9.******9998862233334445555555555.44 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0002
       Mrr_N  30 rf.glseeeraellpsgkqtrfknrvgWartyL 61 
                  f  ls++e+ +l +sg+++++ +r+ W++t++
  CCD24417.1 297 GFtPLSKDELYQL-KSGQKNKYYRRLKWYHTKM 328
                 4545666666665.6**99***********987 PP

>> RPA_interact_M  Replication protein A interacting middle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.1      0.48   1.7e+03       8      23 ..     122     137 ..     115     212 .. 0.72
   2 ?    9.9   0.0    0.0003       1.1       9      48 ..     304     389 ..     302     390 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.48
  RPA_interact_M   8 sdElekLkrssessek 23 
                      +E+e+Lk++s ss++
      CCD24417.1 122 AEEIEALKEKSVSSSE 137
                     5899999988887772 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0003
  RPA_interact_M   9 dElekLkrssesse.......klad.dDm........................................seseelllemerllyedir 48 
                     dEl +Lk++++++             +D+                                        s+++e lle++++lyed+r
      CCD24417.1 304 DELYQLKSGQKNKYyrrlkwyH--TkMDIlkfsteiefdaliiastlhlpslvpilgekvhgsrpivcySQFKETLLELAHVLYEDLR 389
                     8999999998877787543332..247778888888999999999999999999999999999999*********************8 PP

>> Linker_histone  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.6   0.00019      0.67      10      49 ..     123     160 ..     116     170 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00019
  Linker_histone  10 eAIkalkerkGsSrqaIkkyikakykvvdvskfksllkka 49 
                     e I+alke++ sS   I k i+++ ++ d + + +   k 
      CCD24417.1 123 EEIEALKEKSVSSSEIISKMIESHGSF-DKKTV-YSQEKY 160
                     669**********************99.65555.333444 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.4   0.00043       1.5      33     111 ..      94     173 ..      82     182 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00043
       CREPT  33 dvsllekikdkeeaekllkqveealellaeYnkrLeae.leeRkklakmledfleaqkellakaeekleelkeklekvks 111
                 + + le++ ++e+ ++l++  +e ++l ae  + L++  ++  + ++km+e+  +  k+++  +e+ l++ k+k +k+ +
  CCD24417.1  94 EGERLENVVNSENNQHLVNLGNEVQKLSAEEIEALKEKsVSSSEIISKMIESHGSFDKKTVYSQEKYLKRKKQKFDKIFT 173
                 55789******************************876277888899*****************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       827  (0.0461264); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3509.05
//
Query:       CCD24418.1  [L=625]
Description: hypothetical protein NDAI_0D01050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-81  273.4   0.0    2.5e-81  272.1   0.0    1.7  1  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
    4.3e-08   33.5   0.0    3.2e-07   30.8   0.0    2.5  2  Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransfer
  ------ inclusion threshold ------
      0.036   14.2   1.7      0.038   14.1   0.0    1.9  2  FtsJ             FtsJ-like methyltransferase


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.1   0.0   4.2e-85   2.5e-81       1     200 []     345     554 ..     345     554 .. 0.94

  Alignments for each domain:
  == domain 1  score: 272.1 bits;  conditional E-value: 4.2e-85
                      HHHH---TT-EEEESS-TTSHHHHHHHHHTTTTSEEEEEESSCCCHHHHHHHHHHTT--SEEEEES-CTCCHHHHCC..EEEEEEEE--CCGGG CS
  Methyltr_RsmB-F   1 allLapqeeetilDlcaaPGgKTthiaelmknkgtvvAvdankeRlkrvaenlkrLgvtntivleaDarkidkvlggelfDriLlDaPCsgtgv 94 
                      +++L+p+e+e+ilD++aaPGgKTt+i++lmkn+gtv+A+dank+R+k++++n++rLg+tntiv+++Dar+++kv+gg  fDriLlDaPCsgtgv
       CCD24418.1 345 VIALDPHENERILDMAAAPGGKTTYISALMKNTGTVFANDANKNRTKSLIANIHRLGCTNTIVCNYDAREFPKVIGG--FDRILLDAPCSGTGV 436
                      589*************************************************************************9..*************** PP

                      TTT-TCHHHH--HHHHHHHHHHHHHHHHHHCCCE....EEEEEEEEEES--STTTTHHHHHHHHHH-TTEEEESSBSTTSTTSSECEEC..... CS
  Methyltr_RsmB-F  95 irrdpdvklrrkekdiaqlaklqkellsaaidll....kkgGvlvYsTCsvlveEneevieeaLkkredvelvetelsepkglklgeea..... 179
                      i +d++vk++r+ekd++q+ +lqk+ll +aid++    k+gG++vYsTCsv+veE+e+v+++aL+kr++v+lv+t l        g++      
       CCD24418.1 437 IGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVdcnsKHGGIIVYSTCSVAVEEDEAVVDYALRKRPNVKLVDTGLAI------GKDGftsfr 524
                      ***************************************************************************6554......333333344 PP

                      .........TSEEE-TTTTSS-SEEEEEEE CS
  Methyltr_RsmB-F 180 .........gtlrllPhtenkdgffiaklk 200
                                t+r++Pht+n+dgf++ak++
       CCD24418.1 525 gknfhpsikLTKRYYPHTYNVDGFYVAKFQ 554
                      4678999999******************96 PP

>> Methyltr_RsmF_N  N-terminal domain of 16S rRNA methyltransferase RsmF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   5.3e-11   3.2e-07      14      89 ..     262     341 ..     251     342 .. 0.87
   2 ?   -2.6   0.0       1.3   7.9e+03       8      38 ..     369     399 ..     367     406 .. 0.80

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 5.3e-11
                      GGGHHHHHHHHH-----EEE--TTS..TTHHHHHHH..-SS--B-.TT-TTEEES---....TTSHHHHTTS-EE--TTT CS
  Methyltr_RsmF_N  14 geeaeaflaaleeprkkglRvNtlKisveeleklse..efelepv.pwceeGfyleeeerp.gkhplheaGlyYiQEpSa 89 
                      ++ea +f++a e  r+  +R+NtlK+++++l+++    +++l+p+  w++ G  + +++ p g +p++ aG y +Q +S+
       CCD24418.1 262 PAEAMEFFEANEIARPITIRTNTLKTRRRDLAQALVnrGVNLQPIgSWTKVGLQIFDSQVPiGATPEYLAGNYILQAASS 341
                      44999*************************998655589******77******998888777*****************8 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
                      HHHHHHGGGHHHHHHHHH-----EEE--TTS CS
  Methyltr_RsmF_N   8 kmkellgeeaeaflaaleeprkkglRvNtlK 38 
                      ++++l+++  + f +  +++r+k+l  N  +
       CCD24418.1 369 YISALMKNTGTVFANDANKNRTKSLIANIHR 399
                      5778888888999999999999999888765 PP

>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.6       1.6   9.6e+03     148     168 ..      40      60 ..      26      62 .. 0.73
   2 ?   14.1   0.0   6.3e-06     0.038      21     136 ..     352     485 ..     334     503 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.6
                 HHCCEEEEEEEE-SS--CCG- CS
        FtsJ 148 lkkfFekvsvvkPkssrsess 168
                  k +F++ + vkPks++++ +
  CCD24418.1  40 KKPKFDDKKDVKPKSEKKSKN 60 
                 6789999999***99988776 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 6.3e-06
                 TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSS...HHHTTEEEE...CS-CCCSSHHHHHCHCHHHSSEEEEEE--S-SS-CHHHHHHHHH... CS
        FtsJ  21 pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpm...aplpgvtti...qgditdpetiekikealserkvdlvvsDgapdvsgvhdldeylq... 110
                 ++++++D +aaPGg + +++  ++++g v+a D +++   +++ +++ +   ++ + + +++ ++ + +++  +d ++ D   + +gv  +d+ ++   
  CCD24418.1 352 ENERILDMAAAPGGKTTYISALMKNTGTVFANDANKNrtkSLIANIHRLgctNTIVCNYDAR-EFPKVIGG--FDRILLDAPCSGTGVIGKDQSVKvsr 447
                 6788*******************999********9986553334444444212222222222.23333333..55555554433333333333333333 PP

                 ............CCCCHHHHCCHCCCCECCCEEEECCC CS
        FtsJ 111 ............sqLllaalelalkllkpggtfvlkif 136
                              qLll+a+       k+gg++v  ++
  CCD24418.1 448 tekdfiqiphlqKQLLLSAIDSVDCNSKHGGIIVYSTC 485
                 33333334445457777777776677777777776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2452  (0.136762); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.31s 00:00:01.25 Elapsed: 00:00:00.50
# Mc/sec: 3755.33
//
Query:       CCD24419.1  [L=753]
Description: hypothetical protein NDAI_0D01060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-53  181.1   0.0    7.7e-31  107.1   0.0    2.4  2  Actin     Actin


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.1   0.0   4.3e-35   7.7e-31       7     190 ..      39     230 ..      34     300 .. 0.87
   2 !   71.7   0.0   2.4e-24   4.2e-20     267     403 ..     547     742 ..     440     745 .. 0.70

  Alignments for each domain:
  == domain 1  score: 107.1 bits;  conditional E-value: 4.3e-35
       Actin   7 vVlDnGssttraGyagedaPkavipslvgkprgrkveaklyvgde..altkrpelevrspvedGvvedwdaveelwehvlkeelkvdp...eehplllt 100
                 + +D+Gsst+raGy  e  P +++p+ + ++r+rk ++++ +  +  +l++    +++sp +  ++++wd ve+++++++ + l v p    ++p+++t
  CCD24419.1  39 IAIDFGSSTVRAGYTNEARPSHIFPTKLTRYRDRKINKTFTFTGNdcSLDQTIRSQMKSPFDGALITNWDYVEDILQYTFNH-LGVVPdhgVQNPIIIT 136
                 789**********************************99988777344457888999**********************988.55554233689***** PP

       Actin 101 epplnppkqrekalEivfEkfkvpalylaksavlsafasgks....tglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssk 190
                 e+  + ++qr +  +++fE+++vp   ++ +  ++ +++       tg+v+D+ +++t ++p++dG+ +    +r + gG++  ++l +ll  k
  CCD24419.1 137 EKLATIQSQRSNWYQLLFETYNVPKATFGIDSLFAFYNNNNGsatsTGMVIDCSHEETNIIPIVDGQGILTDAKRINWGGRHAIDYLSNLLALK 230
                 *************************************987666677*******************************************99886 PP

  == domain 2  score: 71.7 bits;  conditional E-value: 2.4e-24
       Actin 267 g.............................................................seiklgeeRfkvpEiLFdpsligsesaleeekskllg 304
                                                                               ++i l+ eR +vpEi F+ps+ g ++a         g
  CCD24419.1 547 AfeealeeeykeiieleglllehdpnfteedtveaqydwrnstlhlflrgprphdsedihqqHQIHLNVERIRVPEIVFQPSMGGLDQA---------G 636
                 155555555555555555555555556666666666666666666666666666666666557999***********************.........6 PP

       Actin 305 iselivaain.......acdvdlrpeLlanivvtGGnsllpglteRlekelaqlaskgvkvkiiapeeerkysaWiGGSiLAslg.tfqqlwvskqEYe 395
                 i+el  + +        +   +l  ++++ni +tGGns +pgl+eR+ ke ++ ++ +++ ++  ++ ++ + aW G + LA+++ + +++ +sk+EYe
  CCD24419.1 637 IAELSETILLrkfgsepKHLSELSLTMANNIWLTGGNSKIPGLRERIVKEFREFLPVNTQFNVNMTS-DPTFDAWNGMAKLAQNEtDYKKTIISKKEYE 734
                 66655444431111100445788999****************************9999****99999.****************96789********** PP

       Actin 396 EqGssvve 403
                 E+G+++++
  CCD24419.1 735 EYGPEYIK 742
                 ****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1714  (0.0955993); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 4991.76
//
Query:       CCD24420.1  [L=414]
Description: hypothetical protein NDAI_0D01070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.036   14.3   0.2      0.064   13.5   0.2    1.6  1  HemY_N    HemY protein N-terminus


Domain annotation for each model (and alignments):
>> HemY_N  HemY protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   3.6e-06     0.064       4      43 ..      96     135 ..      93     220 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.6e-06
      HemY_N   4 liawggyrietslvvavlllvllfvllylllrllrlllrl 43 
                 +i+  ++r++ ++  av +++++++l ++++rll+++ + 
  CCD24420.1  96 YITGRDTRLDGTVFIAVGAIIGAIFLTMIVWRLLATIKSN 135
                 6777899***************************998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1311  (0.0731218); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3079.04
//
Query:       CCD24421.1  [L=183]
Description: hypothetical protein NDAI_0D01080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-51  174.1   0.0    1.9e-51  173.9   0.0    1.0  1  Y_phosphatase2  Tyrosine phosphatase family
    1.2e-05   25.4   0.0    1.3e-05   25.3   0.0    1.1  1  Y_phosphatase3  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.9   0.0   2.1e-55   1.9e-51       1     158 [.       7     166 ..       7     173 .. 0.93

  Alignments for each domain:
  == domain 1  score: 173.9 bits;  conditional E-value: 2.1e-55
                     B---TT-EEEET...TEEEESS--HHHHHHHHH.CT-SEEEE-SSS---HHHHH.HHHHCT-EEEE-------GGG----HHHHHHHHHHHH-GG CS
  Y_phosphatase2   1 lvpplnFsaves...elyrssyprasnfsflks.LkLktiislspeeesqdelq.fleeekiklyhiaiesnkeelveiksdllkkalklllnke 90 
                     ++pplnFs+v+s   +lyrs+yp++ n+ f+k  L+Lktii++ ++e    e+  fle e+i +yh+ ++s ++   +++++ + ++lkl+l+++
      CCD24421.1   7 YIPPLNFSPVVStdvSLYRSGYPMPLNYQFIKDqLNLKTIIYIGDKEPISPEYSdFLERENISYYHVYMDSCRD---KDIQKGMDQVLKLVLDVD 98 
                     69********999999****************99*********998776666666*******************...9999************** PP

                     G-SEEEE-SSSSSHHHHHHHHHH.HHTTB-HHHHHHHHHHHHCCC--HHHHHHHHC---HHHHHHHH.H CS
  Y_phosphatase2  91 nypvllhckrGkhrtglvigclR.klqkWslasilnEyrrFsgskkrivdeefienfdselevekknkk 158
                     nyp+l+h+++Gkhr+g+v+g++R  lq+Ws+a i +Ey  Fsg  k   d efi++f ++l+v++++  
      CCD24421.1  99 NYPILMHSNKGKHRVGVVVGIIRkLLQGWSIAGIYQEYGIFSGGLKGDADLEFITMFATDLTVRNEK-I 166
                     ***********************44699**********************************99875.4 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.4e-09   1.3e-05      94     156 ..      69     136 ..      23     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.4e-09
  Y_phosphatase3  94 tlaelYrelle..sakkayrkvfealad.ee.pvlfHCtaGKDRTGvlaalllsll.GvdeedivaDY 156
                     ++ ++Y++ ++  + +k + +v++ ++d ++ p+l+H   GK R Gv++ ++ +ll G + + i+++Y
      CCD24421.1  69 SYYHVYMDSCRdkDIQKGMDQVLKLVLDvDNyPILMHSNKGKHRVGVVVGIIRKLLqGWSIAGIYQEY 136
                     3344455555466667************8889********************9988577888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       334  (0.018629); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1415.90
//
Query:       CCD24422.1  [L=1224]
Description: hypothetical protein NDAI_0D01090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-28  100.5  12.1    1.2e-22   80.9   0.2    4.8  4  Vac7      Vacuolar segregation subunit 7
  ------ inclusion threshold ------
        0.9    9.6   5.4        1.4    9.0   0.0    3.8  4  ETRAMP    Malarial early transcribed membrane protein (ETRAMP


Domain annotation for each model (and alignments):
>> Vac7  Vacuolar segregation subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -11.1  11.5         2   1.8e+04     231     239 ..      85      93 ..      27     255 .. 0.56
   2 !   31.8   7.0   1.1e-11   9.7e-08      57      93 ..     373     409 ..     347     555 .. 0.83
   3 ?    2.0   4.5     0.012   1.1e+02     107     192 ..     578     661 ..     573     753 .. 0.70
   4 !   80.9   0.2   1.4e-26   1.2e-22     132     378 ..     786    1061 ..     768    1063 .. 0.67

  Alignments for each domain:
  == domain 1  score: -11.1 bits;  conditional E-value: 2
        Vac7 231 srktasskk 239
                  ++t++ ++
  CCD24422.1  85 VSSTQQMQR 93 
                 222222222 PP

  == domain 2  score: 31.8 bits;  conditional E-value: 1.1e-11
        Vac7  57 tassKADiFeakvAsavdeanssDSdETFvYeSNPpd 93 
                 +  +K D F+ak+Asav ++++sDS+ETFvYeS    
  CCD24422.1 373 QKPTKTDFFAAKLASAVGDNEVSDSEETFVYESAANS 409
                 4568*****************************7654 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.012
        Vac7 107 PSatSmasqvdqrsglrsiaevldseksvagkksmKFsnttynssaldsdseesdegkkrsrgegsgrgtarhhhigrygrkakng 192
                 P at m s  +     r++++  +++ s+    +   +ntt+n+++++++++ ++++ ++s+ ++ ++ t+r+ +i+r+  +  ++
  CCD24422.1 578 PQATGMISSPSI--PRRNMNGNTNNNYSMNNINNSDNTNTTNNNNNNNNNNNIQSKTYGTSMNATLSNPTQRKSSITRHTANLPKQ 661
                 667777766332..346666666655555555555666666555555555544444444555555577788888999998743333 PP

  == domain 4  score: 80.9 bits;  conditional E-value: 1.4e-26
        Vac7  132 eksvagkksmKFsnttynssaldsdseesdegkk....rsrgegsgrgtar.hhhigrygrkaknghsslfdeespftqaqksrakkl......... 214 
                  + ++ +k sm F   + n+s+l++   ++de       rs+   s r +   + hi  y  +     + + ++++p ++ ++ +++++         
  CCD24422.1  786 SINSNKKESMNFNHPN-NNSNLEQMLDDDDEM-VpdddRSMFYYSHRDDLEaRPHIADYRNDFVDDEEDVGEDHDPLSHNNHVNNQNHplyydngyt 880 
                  55678899****7654.555666655444433.2245577666666655554689999999888888888888999999999888888899987665 PP

        Vac7  215 .....srqssrpksprssass.......................srktasskkkkeeas.ydldaegaddErtPLvgsvRsarsrr.srrrpnsasl 281 
                              +s ++   +                       +    +  +++++a+      ++ ++   P ++ +   r ++  +r+  s s 
  CCD24422.1  881 teinnG-----RRSFKH---TsyydptlsptffqhqqlpqqhnlT---LTGAQSQHNAGfLATHPQQQQQQLQPNINENTPLRPKNrPARNGFSYSP 966 
                  333331.....223333...1334666667777777998764331...3333333333332333445555555555444333333312334434554 PP

        Vac7  282 rqleelqqrrrsllsrfaaClvltvlll.lvvsg.aigflfattkpLedvevvkiqnvlaseqelmlDlevkAvNpNvvavtvdeldvniFAkSkyv 376 
                  +++++    ++s +s++  C+ +t++++ l+++g  +gfl+at+k L+++ +v ++n++ s +el++D++v+A Np  +++t+ ++d+++FA+S+++
  CCD24422.1  967 HNFNT----KKSSWSKIKNCVYFTFVVIsLLTVGfILGFLLATNKELQGIDIVVMDNIISSSDELVFDVTVSAFNPGFFSITIRDIDIDVFARSSFI 1059
                  55544....66777899999988776653555662579*********************************************************98 PP

        Vac7  377 gt 378 
                   +
  CCD24422.1 1060 NK 1061
                  76 PP

>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.49   4.4e+03      22      69 ..     430     477 ..     408     480 .. 0.79
   2 ?   -2.3   2.7      0.54   4.8e+03      30      46 ..     614     628 ..     589     651 .. 0.59
   3 ?    9.0   0.0   0.00016       1.4      39      81 ..     966    1007 ..     859    1009 .. 0.66
   4 ?   -2.6   0.0      0.68   6.1e+03      16      54 ..    1111    1147 ..    1110    1155 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.49
      ETRAMP  22 eslcdevnkkkekakkaikkiddkiekkkkkkKliiistiatalallv 69 
                 +++ + + ++++k +  i + ++k+    k+++ i    i t+ ++++
  CCD24422.1 430 QVSENRSHGITPKMSVPILNNNKKLLSRLKNTRHISTGGIPTTSLAAL 477
                 455666667778999999999999999999999777766666665555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.54
      ETRAMP  30 kkkekakkaikkiddki 46 
                 +    ++++ ++ +++i
  CCD24422.1 614 N--TTNNNNNNNNNNNI 628
                 2..22222223333333 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00016
      ETRAMP   39 ikkiddkiekkkkkkKliiistiatalallvasalGlgiykkk 81  
                    ++++k     +k K++++ t +++ +l v+ +lG+ + ++k
  CCD24422.1  966 PHNFNTKKSSW-SKIKNCVYFTFVVISLLTVGFILGFLLATNK 1007
                  45666666666.899*********************9999987 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 0.68
      ETRAMP   16 vnlltpeslcdevnkkkekakkaikkiddkiekkkkkkK 54  
                  +++l p+s+  ++n+ +   +++ ++ dd  ++  k+ K
  CCD24422.1 1111 IKILHPGSNDAKHNGGS--GGNDEDDNDDRDKQGAKQEK 1147
                  78999999999999854..22222222222222223444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1957  (0.109153); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.29s 00:00:01.32 Elapsed: 00:00:00.48
# Mc/sec: 7648.86
//
Query:       CCD24423.1  [L=530]
Description: hypothetical protein NDAI_0D01100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-36  124.9   0.8    5.3e-36  123.4   0.8    1.9  1  DSPc             Dual specificity phosphatase, catalytic doma
     0.0065   16.1   0.0      0.019   14.5   0.0    1.8  1  Y_phosphatase    Protein-tyrosine phosphatase
  ------ inclusion threshold ------
       0.01   16.0   0.5      0.031   14.4   0.0    2.0  2  PTPlike_phytase  Inositol hexakisphosphate


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.8   8.9e-40   5.3e-36       1     132 [.     235     362 ..     235     363 .. 0.92

  Alignments for each domain:
  == domain 1  score: 123.4 bits;  conditional E-value: 8.9e-40
                 EEEEECCHHCHHHHHHHTCSEEEEESSSSSEC..ECCTTTTSEEEEECCESSTTSCCGGGHHHHHHHHHHHHHTT-EEEEEESSSSSHHHHHHHHHHHH CS
        DSPc   1 lylgskstaslallsklgitlvinvtkevpna..nalkkseieklripvedehetkiskyleeavefidkakqkgkkvlVHCqaGisRSatliiaYlmk 97 
                 +yl+s+++++    ++l+++lvinv++e++n   ++  +++ie+ +i    +h++kis++l+e++e+   a+ +++++l+HCq+G+sRSa+li+aY+m+
  CCD24423.1 235 IYLYSEPRLE----EILSFDLVINVAEEIDNLstHLPTNKNIEYYQILW--SHNSKISEDLKELTEIMYHATLQNRRILIHCQCGVSRSASLIVAYIMR 327
                 7*********....****************9866666666666666654..679********************************************* PP

                 HHTSCHHHHHHHHHHHSTT-SSTHHHHHHHHHHHH CS
        DSPc  98 tknlslneayeflkerrpaispnagfirqLleyek 132
                 +++l+ln+ay+ lk+ + +ispn+g+i+qL+e+++
  CCD24423.1 328 YHHLNLNKAYDELKSIAHDISPNMGLIFQLMEWNE 362
                 *********************************97 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.2e-06     0.019     143     196 ..     279     329 ..     253     348 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.2e-06
                    S-.SSSSGSCCHHHHHHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHHH CS
  Y_phosphatase 143 Wp.dhgvpesaksllklirkvekskeaksgpvvVhCsaGvgRtgtfvaldillqq 196
                    W+ ++++ e+ k+l++++  +      ++  +++hC  Gv+R+++++++ i+  +
     CCD24423.1 279 WShNSKISEDLKELTEIMYHAT----LQNRRILIHCQCGVSRSASLIVAYIMRYH 329
                    5533444455555555544444....4569*****************99887544 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   5.1e-06     0.031      89     154 ..     261     326 ..     219     327 .. 0.85
   2 ?   -1.8   0.6       0.5     3e+03      33      33 ..     437     437 ..     356     511 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.1e-06
                      E-HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS.-TT-EEEEE-SSSSHHHHHHHHHHHH CS
  PTPlike_phytase  89 vyerelaeelslrYaRipitdekapeeedfdalvsilkea.pektalvfnCqmGrgRTTtamviatL 154
                        + +l ++ +++Y+ i  + +  ++ ed+++l++i+ +a  ++  ++++Cq G+ R+   +v++ +
       CCD24423.1 261 NLSTHLPTNKNIEYYQILWSHNSKIS-EDLKELTEIMYHAtLQNRRILIHCQCGVSRSASLIVAYIM 326
                      556788899999***99998888876.69***********999***************999888766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.5
                      H CS
  PTPlike_phytase  33 g 33 
                      +
       CCD24423.1 437 S 437
                      1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1757  (0.0979977); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.29s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3526.17
//
Query:       CCD24424.1  [L=393]
Description: hypothetical protein NDAI_0D01110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-38  132.0   6.3    1.4e-38  132.0   6.3    3.1  3  COG5      Golgi transport complex subunit 5
  ------ inclusion threshold ------
      0.069   13.6   0.3         25    5.4   0.0    3.4  3  FOXO-TAD  Transactivation domain of FOXO protein family


Domain annotation for each model (and alignments):
>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   6.3   1.6e-42   1.4e-38       1     130 [.       8     140 ..       8     142 .. 0.95
   2 ?   -2.1   1.3      0.45   4.1e+03      32      65 ..     161     194 ..     144     205 .. 0.59
   3 ?    1.5   0.1     0.035   3.1e+02      37      72 ..     282     316 ..     260     325 .. 0.71

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 1.6e-42
                 XXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXX-TTH CS
        COG5   1 eaFLepdFdpksfanallkatnnn..ddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslss.vlselksslesLsasyerlkskvl 96 
                 ea+Le++F+  +fan+llkatn++  ++teld++tp+k+l+yd++e+d r+++l+++n ++++++l k ks ++ +++el+ s  +Ls+sy+rl+++vl
  CCD24424.1   8 EALLEDSFNKRQFANDLLKATNDEssTTTELDIETPIKKLKYDLDEVDARIDDLLRNNSTNIINQLYKGKSSQNiINNELNDSFGYLSMSYKRLQEEVL 106
                 789****************88875226789********************************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        COG5  97 epyeeaeklqsalkrlhqtldLlrralrflhlsk 130
                 epye+a+klqs l+++hqt+ Llr++l+++h+++
  CCD24424.1 107 EPYEKAQKLQSVLSKVHQTSILLRDSLIYIHIIN 140
                 *******************************986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.45
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  32 stplkrlnydiqeldkrlrqlitsnhleLlehls 65 
                  +++ +l    ++l+  l+q+++ + l++++hl+
  CCD24424.1 161 TAKAIKLATLYSQLQLNLNQNVNLKSLQVIKHLE 194
                 2233345555677777777777777777777775 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.035
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  37 rlnydiqeldkrlrqlitsnhleLlehlskskslss 72 
                 + +ydi  l++ l+++ + + ++Ll++ +k+++ +s
  CCD24424.1 282 KRSYDIYSLEDALHNI-KFEDTNLLTEYTKQRKPKS 316
                 5589999999999875.5555556666555555444 PP

>> FOXO-TAD  Transactivation domain of FOXO protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0028        25       6      24 ..      36      54 ..      34      57 .. 0.93
   2 ?    1.7   0.0     0.039   3.5e+02      23      32 ..      81      90 ..      80      98 .. 0.81
   3 ?    1.9   0.0     0.033     3e+02      23      35 ..     251     263 ..     250     264 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0028
    FOXO-TAD  6 sDLDldmfqesLeCDvdsI 24
                ++LD++  +++L +D+d++
  CCD24424.1 36 TELDIETPIKKLKYDLDEV 54
                68***************87 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.039
    FOXO-TAD 23 sIirndLmdg 32
                +Ii+n+L+d+
  CCD24424.1 81 NIINNELNDS 90
                7********8 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.033
    FOXO-TAD  23 sIirndLmdgdgL 35 
                 +I++n Lmd++ L
  CCD24424.1 251 YILSNVLMDSQTL 263
                 79********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1325  (0.0739026); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2885.53
//
Query:       CCD24425.1  [L=257]
Description: hypothetical protein NDAI_0D01120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-18   67.0   0.1    2.4e-18   66.2   0.1    1.4  1  DUF2011   Fungal protein of unknown function (DUF2011)
  ------ inclusion threshold ------
        5.4    6.5   6.6        7.3    6.1   6.6    1.1  1  SseC      Secretion system effector C (SseC) like family


Domain annotation for each model (and alignments):
>> DUF2011  Fungal protein of unknown function (DUF2011)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.1   2.6e-22   2.4e-18       1      89 []      68     173 ..      68     173 .. 0.95

  Alignments for each domain:
  == domain 1  score: 66.2 bits;  conditional E-value: 2.6e-22
     DUF2011   1 fe.FrLFssaak....................aaktqklkirLrspspeegeggfivpeRpksYYfaeplseeereqfeeaAvsgedvlaeaks..rwp 76 
                 fe F+LFs+a++                    +++++++ki+Lr+pspe     +i+++Rpks+Yfa+ +s+ee ++f+ +A+++++ l+e +   +  
  CCD24425.1  68 FEfFPLFSMATEptsridgvetstteydeergRSTNRLMKISLREPSPE-----IINQKRPKSHYFAS-YSKEEIDKFQLSAITYDSLLKEFEMgpNKG 160
                 6669*******9*******************99****************.....**************.***********************9897777 PP

     DUF2011  77 gcelpwrvihlke 89 
                   +++++vi+lke
  CCD24425.1 161 FEQFRGKVIDLKE 173
                 7899******985 PP

>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.6   0.00081       7.3      18      56 ..     194     237 ..     183     239 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00081
        SseC  18 eskqkllkelqekqeklrqeqveeireqikka.....eekakka 56 
                 + kq l k+l +++ k+r+ +++eir++ikk+      +k+kk+
  CCD24425.1 194 SQKQRLAKKLGAERLKERENRAKEIRKMIKKQfhkrgGKKNKKK 237
                 6789999*************************988887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1528  (0.0852251); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1941.93
//
Query:       CCD24426.1  [L=917]
Description: hypothetical protein NDAI_0D01130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-66  223.6   0.0    6.1e-66  222.5   0.0    1.6  1  Sec23_trunk     Sec23/Sec24 trunk domain
    3.8e-22   78.0   0.5    3.8e-22   78.0   0.5    2.1  2  Sec23_helical   Sec23/Sec24 helical domain
    1.4e-14   53.8   5.2    2.8e-14   52.9   5.2    1.5  1  zf-Sec23_Sec24  Sec23/Sec24 zinc finger
    2.5e-14   53.8   0.0    5.3e-14   52.7   0.0    1.6  1  Sec23_BS        Sec23/Sec24 beta-sandwich domain
    1.1e-09   38.0   0.0    6.7e-09   35.5   0.0    2.3  2  Gelsolin        Gelsolin repeat
  ------ inclusion threshold ------
       0.03   14.3   0.5       0.11   12.5   0.0    2.0  2  DUF3219         Protein of unknown function (DUF3219)


Domain annotation for each model (and alignments):
>> Sec23_trunk  Sec23/Sec24 trunk domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.5   0.0     2e-69   6.1e-66       1     243 []     303     545 ..     303     545 .. 0.98

  Alignments for each domain:
  == domain 1  score: 222.5 bits;  conditional E-value: 2e-69
                  SS--EEEEEEE-SHHHHHHTHHHHHHHHHHHHCTTSS.TSTT-EEEEEEESSSEEEEETSTTS..SSSEEEEECHTTSCCSSTSSSSSEETTTTHHHH CS
  Sec23_trunk   1 pkppvflFviDvsleaikegelkalkeslkqsLdllP.eepralvglitfdsvvhffelksel..rqpkelvvsdlqdvflpladrlLvplseseavl 95 
                  p p ++ F++Dvs++ai++g+l+++ +s++++L++lP ++ r++v+++++d+++h+f +  ++  +q +++ + dl+++flp++++l+ +l+ ++++l
   CCD24426.1 303 PPPSIYTFILDVSQNAIRNGLLATATRSILDNLEYLPnHDGRTRVSILCVDNAIHYFAVPNDEesDQIEMMDICDLDEPFLPRPNSLVASLRLCRNNL 400
                  6899*********************************99********************999878999****************************** PP

                  HHHHHHHHHHSTT-TTC-----HHHHHHHHHHHHCHCTS-EEEEEEESS---SSTTTSS-SBTTSCCTSSTTCHHCHSCSSSCHHHHHHHHHHHCTEE CS
  Sec23_trunk  96 edlLeelpemfavtagkrperalgpalkaavellkavetggkiivfvgslptvgaggklksredeslldidkekaklvkkadkfYkkLakecvkqgis 193
                  e++L+++pe+f+ +    ++ algp lkaa++l++   +ggkiiv++ +lp++g+ g+l++r+++++ ++ ke+++l++++d+fYk+++ +c+k +i+
   CCD24426.1 401 EKVLNKIPEIFQAN--SMTKFALGPGLKAAYNLIS--GIGGKIIVISATLPNIGI-GALQKRQENNVTNTPKESSALLSCQDNFYKNFTVDCSKLQIA 493
                  **************..*******************..899***************.****************************************** PP

                  EEEEEECSS--SHHHHTHHHHTTT-EEEEETTTC..CHHHHHHHHHHHHHHH CS
  Sec23_trunk 194 vDlFlfsldyvdlaelkqlaeltgGqvvlydsFs..aekdasklkqdlkrvv 243
                  +D+F++s+dy d+a+l++l+++tgGq++ y+ F   +  d  k+ +++ +++
   CCD24426.1 494 IDIFVASDDYKDIATLSNLTRFTGGQIHQYPGFIatNLIDVTKFTKEFSKHI 545
                  *********************************966778*********9975 PP

>> Sec23_helical  Sec23/Sec24 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.4   4.1e+03      20      46 ..      80     106 ..      68     144 .. 0.61
   2 !   78.0   0.5   1.3e-25   3.8e-22       1     102 [.     644     746 ..     644     747 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.4
                    S-HHHHHHHHHHHHHHHHHHHHHH--- CS
  Sec23_helical  20 sgladarealdtslvdllsayrkvgas 46 
                      ++ a  +l++   d  ++y++++++
     CCD24426.1  80 TAYSMANLQLNNNAMDPSAYYQQQQQQ 106
                    344444445555555555555555544 PP

  == domain 2  score: 78.0 bits;  conditional E-value: 1.3e-25
                    -HHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHHHHHHHH----..---------GGGTTHHHHHHHHHTSTTTS--TT--HHHHHHHHHHHH CS
  Sec23_helical   1 Dqeavtvllakqaidkalesgladarealdtslvdllsayrkvgasg..sspsqlqlpeslklLPlyilallKspafrggnsvpaDervfalslll 94 
                    Dq a+t++l+++ai+ka +s+l++ar++l++s+ d+l +y+k+ +s+  +++s l+l+++l++LPl+i++l K++afr  + +p+D+r+ al+ l 
     CCD24426.1 644 DQLAITAVLTQKAIQKAINSSLNEARDFLTRSIQDILLSYKKEIVSSnvTGTSPLRLSSNLRMLPLLIHCLTKNAAFRA-SIIPSDHRSGALNYLE 738
                    99******************************************9998877778************************7.59************** PP

                    H--HHHHH CS
  Sec23_helical  95 slpvdqll 102
                    ++p++ l+
     CCD24426.1 739 TAPLKYLI 746
                    ***99876 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   5.2   9.4e-18   2.8e-14       2      37 ..     229     265 ..     228     266 .. 0.92

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 9.4e-18
  zf-Sec23_Sec24   2 irCrrCraylNpfckidfg.gkrwiCnfCnhknevpp 37 
                      rCrrCr+y+Npf+kid++ ++rw+CnfC   n++p 
      CCD24426.1 229 SRCRRCRSYMNPFVKIDNDaNRRWRCNFCRLANDIPM 265
                     69**************9995688************96 PP

>> Sec23_BS  Sec23/Sec24 beta-sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   1.8e-17   5.3e-14       3      95 ..     552     632 ..     550     633 .. 0.95

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 1.8e-17
                 EEEEEEEE-TTEEEEEEESSSEECSTBESSEESECSESEEEEEEEETT--EEEEEEESSBTCTTSEEEEEEEEEEEETTSEEEEEEEEEEEEE CS
    Sec23_BS   3 natlevrtSkelkvsgliGncvslsnvsekeiGeggtsewklcsldpdstlavyfdideklksgkqayiQfatlYthssgerrlRVttvalpv 95 
                 + +++ r S++++  +++G+++++s         +++  +++++l +d+ ++++++ de+l  g+ +yiQ+atl + ++g+rr+RV+t++lp+
  CCD24426.1 552 ETVMRARGSPGVRTDKFYGHFFNRS---------SDL--CAFSALPRDQEYVFELTLDENLI-GEYCYIQVATLLSLNTGQRRIRVITLCLPT 632
                 679**********************.........9**..*******************7776.8**************************997 PP

>> Gelsolin  Gelsolin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       0.6   1.8e+03      38      69 ..     133     167 ..     123     171 .. 0.78
   2 !   35.5   0.0   2.2e-12   6.7e-09       3      73 ..     773     844 ..     771     847 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.6
                 HHHHHHHHHHHHHHHH...HCTTTTTSEEEEEETT CS
    Gelsolin  38 sqeeknfaadlaaeld...seerfplpeliredqg 69 
                  +  ++f+ dl + l+   +e  +p p++++e+ +
  CCD24426.1 133 KPMNQLFSIDLLTSLPphiEELQYPPPPIMVEPSN 167
                 56678889999999999985556999999998876 PP

  == domain 2  score: 35.5 bits;  conditional E-value: 2.2e-12
                 EEEEEBSSSGGGEETTSEEEEEESSEEEEEEHTT..SHHHHHHHHHHHHHHHHHCTTTTTSEEEEEETTHHHH CS
    Gelsolin   3 vlpkvvklsssslesgdcyLLdngftiflWiGke..ssqeeknfaadlaaeldseerfplpeliredqgkepa 73 
                 vlp++v++ss s++  + yL+dn +++flW+G +  s +  ++f+   + +++ + + +lp++   + +++ +
  CCD24426.1 773 VLPQPVNASSASFDKYGLYLIDNSKELFLWMGGDavSELISDVFGTPEIFQIP-TGKAELPVVPSSTFNERVR 844
                 79***************************************************.5558888876666666655 PP

>> DUF3219  Protein of unknown function (DUF3219)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.1   3.4e+03       2      24 ..      87     109 ..      86     112 .. 0.79
   2 ?   12.5   0.0   3.6e-05      0.11      14      43 ..     480     510 ..     475     517 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.1
                 EEETTEEE--SEEEEE-.SSS-E CS
     DUF3219   2 vvlnkrkidveaykeesvkgkkk 24 
                 + ln++ +d  ay +++ + +++
  CCD24426.1  87 LQLNNNAMDPSAYYQQQQQQQQQ 109
                 689******99998888666665 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.6e-05
                 EEEE-..SSS-EEEEEEEE-TTTHHHHTT-B CS
     DUF3219  14 ykeesv.kgkkkiafdlkvtseeyhdiatll 43 
                 yk+ +v  +k +ia+d+ v+s++y diatl 
  CCD24426.1 480 YKNFTVdCSKLQIAIDIFVASDDYKDIATLS 510
                 888888345669*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       997  (0.0556082); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.45
# Mc/sec: 6100.51
//
Query:       CCD24427.1  [L=245]
Description: hypothetical protein NDAI_0D01140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-39  135.1   0.1    1.6e-39  134.7   0.1    1.1  1  UQ_con    Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.058   13.7   0.3       0.12   12.6   0.3    1.7  1  RWD       RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7   0.1   1.8e-43   1.6e-39       9     139 ..      30     160 ..      23     161 .. 0.94

  Alignments for each domain:
  == domain 1  score: 134.7 bits;  conditional E-value: 1.8e-43
                 HHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TTSBB-CGGGSTTT--TTSHHHHHHH.HHH CS
      UQ_con   9 lakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ksGevcldiLkeekWspaltlesvll.siq 105
                 ++k  +s  +++lv+d n++e+ + + gp+dtpYe+gv++l++e+p++YP+k+P++ fv+kifHPn+d +sG++cld+++++ Wsp ++l +++   i 
  CCD24427.1  30 VMKLLMSDHDVELVND-NMQEFYIKFCGPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDiASGSICLDVINST-WSPLYDLLNIVEwMIP 126
                 4566778889999997.***************************************************************55.************9*** PP

                 HHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con 106 sLlaepnpesplnkeaakllkkdreeykkkvkey 139
                  Ll+epn ++pln+eaa+l  kd++ y++++key
  CCD24427.1 127 GLLKEPNGSDPLNNEAATLELKDKKLYEERIKEY 160
                 *******************************987 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   1.4e-05      0.12      52      79 ..      64     105 ..      19     171 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.4e-05
                 CEEEEEEEEE-SSTTSS--EEEEEECC..............S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx..............x RF
         RWD  52 kpslkleiklpeeYPeeaPiislsste..............n 79 
                 +   +l+++lp +YP++ P i + ++               +
  CCD24427.1  64 NGVWRLHVELPDNYPYKSPSIGFVNKIfhpnidiasgsiclD 105
                 45668***************9988877556444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1859.98
//
Query:       CCD24428.1  [L=703]
Description: hypothetical protein NDAI_0D01150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-27   95.5   0.1    7.6e-27   93.6   0.1    2.1  1  Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
    3.4e-16   59.4   0.1    7.8e-16   58.2   0.1    1.7  1  CBM_48           Carbohydrate-binding module 48 (Isoamylase N
    3.6e-15   56.4   0.2    1.3e-13   51.2   0.1    2.7  2  Alpha-amylase    Alpha amylase, catalytic domain
     0.0073   15.0   0.0      0.015   13.9   0.0    1.4  1  Glyco_hydro_66   Glycosyl hydrolase family 66


Domain annotation for each model (and alignments):
>> Alpha-amylase_C  Alpha amylase, C-terminal all-beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   0.1   1.7e-30   7.6e-27       1      95 [.     608     702 ..     608     703 .] 0.97

  Alignments for each domain:
  == domain 1  score: 93.6 bits;  conditional E-value: 1.7e-30
                      EEEEEETTSSEEEEEECTTTEEEEEEE-SSSSEEECEEESSSSSEEEEETTCTTSGCCTTT-.SSTSS-EEEECT..TCBSEEEEEEESTTEEE CS
  Alpha-amylase_C   1 wvsakdeenkviaFeRgdgekllvvfNfhpsnsrqdyrvgvpaagkyrdvlntdaeeyggsg.lgntgkvvtvdd..dgransltltlpprsal 91 
                      +vs k+e +kviaFeR++    l++fNfhp+ns++dyr+gv++ag yr +lntd +e+gg++ ++++ +++t+d   ++r+n++++++p+r+a+
       CCD24428.1 608 YVSLKHEVDKVIAFERNG---KLFIFNFHPTNSFSDYRIGVEQAGSYRIILNTDRQEFGGQNrIDENARFFTTDLewNNRKNFIQVYIPCRTAI 698
                      78999************9...9****************************************9**********9999***************** PP

                      EEEE CS
  Alpha-amylase_C  92 vlkv 95 
                      +l++
       CCD24428.1 699 ILAL 702
                      *986 PP

>> CBM_48  Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.1   1.7e-19   7.8e-16       2      83 ..      62     148 ..      61     149 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.7e-19
                 SEEEEESSCEEEEEEEE-TTSSEEEEEECGTTTEEECCB-EEECGGCEEEEEEET......TSTTTT.EEEEEEEETTSCEEEE--TT CS
      CBM_48   2 lGahvsedekgvnfrvwapnAekVslvldfnnwdaeeiplkrrrtggvWelflpg......dlphgslrYkyrvkgpsgekklllDPy 83 
                 +G+h +++ k++ +++wapnA+++ lv+ fnnwd+++++lk+++++g + +++p+      ++ph+s ++k++++ ++g++ ++l+++
  CCD24428.1  62 YGLHANPQTKEISYKEWAPNAKRAFLVGEFNNWDGSNHELKNKDEFGNFYITIPPlsngdyAIPHDS-KIKVKFQLEDGSEIYRLPAW 148
                 8999998779********************************************************8.******************99 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.1     3e-17   1.3e-13      10      90 ..     221     302 ..     217     326 .. 0.85
   2 ?    1.6   0.0     0.037   1.6e+02     144     179 ..     326     362 ..     319     394 .. 0.75

  Alignments for each domain:
  == domain 1  score: 51.2 bits;  conditional E-value: 3e-17
                    CCCCCCCT-SCEEE-B-CE.-S-TTTTSS-SCECCE-CCC--CCCCCCHHHHHHCTT-EEEEEE--SC--TTSCCCHCCHHS CS
  Alpha-amylase  10 LdYlkeLGvtaiwlsPifk.spqadhgYdiadytkidpefGtnedlkeLiskahekgikvilDlVvNHtsdehewfkeslkk 90 
                    L+ +k+LG +ai l  i++ + +a +gY ++++ +   ++Gt edlkeLi+ ah  gi v+lD+V  H s+++e   ++++ 
     CCD24428.1 221 LPRIKKLGYDAIQLMAIMEhAYYASFGYQVTNFFAPSSRYGTPEDLKELIDTAHGMGILVLLDVVHSHASKNVEDGLNNFDG 302
                    5669**************9777899**********************************************99864444443 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.037
                    B-TTTCCCCCCCCCCCCCCCTTT.-SEEEETTCCCTT CS
  Alpha-amylase 144 Lnteneevrkelkdvvkfwlekg.idGfRlDvvkhvs 179
                    +n+ n ev++ l   ++++++    dGfR D v  + 
     CCD24428.1 326 FNYGNFEVQRFLLSNLTYYIDVYqFDGFRFDGVTSML 362
                    578888999999998899999777*******887654 PP

>> Glyco_hydro_66  Glycosyl hydrolase family 66
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.4e-06     0.015     166     297 ..     264     392 ..     246     411 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.4e-06
                     HHHHHHHHHHHHTT-EEEEEEESSEEETTSSBTTBSTTSB-EEETTEEEE..................EEB-TT-HHHHHHHHHHHHHHHHHHT- CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_66 166 savkeyiaaahskgikamaYnliyaalkdeaeadgvkkewalfkdknateqdkvklpse.....ksdiylmdpsnkeWqkyiieqnkkvvkafdf 255
                     + +ke+i++ah  gi  ++ ++   a+k+      v++  +  + +++ +q+ ++l+s+      +d  l++++n e q++++++ +  +++++f
      CCD24428.1 264 EDLKELIDTAHGMGILVLLDVVHSHASKN------VEDGLN--NFDGSDHQYFHSLSSGrgehpLWDSRLFNYGNFEVQRFLLSNLTYYIDVYQF 350
                     56788899999999888776655555555......222222..222222223444422222123489999************************* PP

                     -EEEEE-S---.EEEEGGGTT--CHHHHHHHHHHHHHHSTTS CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_66 256 DGvhiDqlGdrgevydadgksvdlsatfaefleaakealekk 297
                     DG++ D + +   +++  g+    s +++e+l++ ++ ++++
      CCD24428.1 351 DGFRFDGVTSMLYLHHGVGEGGAFSGDYNEYLSKERSGVDHE 392
                     ***********99*******************9999888773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 5019.86
//
Query:       CCD24429.1  [L=65]
Description: hypothetical protein NDAI_0D01160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      190  (0.0105974); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 495.96
//
Query:       CCD24430.1  [L=342]
Description: hypothetical protein NDAI_0D01170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-06   26.3   2.2    9.6e-06   25.5   2.2    1.5  1  zf-CCHC         Zinc knuckle
     0.0025   17.7   2.9      0.024   14.5   1.2    2.2  2  DUF637          Possible hemagglutinin (DUF637)
  ------ inclusion threshold ------
      0.059   13.7   0.1       0.18   12.1   0.0    1.9  2  Retrotrans_gag  Retrotransposon gag protein
       0.06   13.5   0.0          1    9.6   0.0    2.2  2  ApbA_C          Ketopantoate reductase PanE/ApbA C terminal
      0.065   13.8   0.1       0.21   12.2   0.0    1.9  2  5_3_exonuc      5'-3' exonuclease, C-terminal SAM fold
       0.56   10.0   3.4       0.96    9.2   3.4    1.4  1  zf-C2H2_10      C2H2 zinc-finger
       0.56   10.6   4.5       0.17   12.3   0.9    2.0  2  eIF3g           Eukaryotic translation initiation factor 3 su
       0.77    9.5   2.7        1.5    8.6   2.7    1.5  1  zf-CCHC_5       GAG-polyprotein viral zinc-finger


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   2.2   4.3e-09   9.6e-06       2      18 .]     322     338 ..     321     338 .. 0.94

  Alignments for each domain:
  == domain 1  score: 25.5 bits;  conditional E-value: 4.3e-09
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                  Cy+C+e+GH+a  Cp+
  CCD24430.1 322 RCYRCNETGHFAAKCPS 338
                 6***************6 PP

>> DUF637  Possible hemagglutinin (DUF637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.2   1.1e-05     0.024      42     132 ..      40     131 ..      22     145 .. 0.81
   2 ?    2.5   0.0      0.05   1.1e+02       7      32 ..     252     277 ..     250     283 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.1e-05
      DUF637  42 taavtAGllsgiddaslatsqdvaknavpqadastvsgvaqrlaaqlaqsvisagvntainGGsfkdNlktallsslvsqlaaeganlIG.d 132
                 taa+t G  + +++++++ s + + +  + +  s++++v   l + ++q ++++ ++tai+G   ++ l++  lss ++++a  +a++ G +
  CCD24430.1  40 TAAATVGGEEHVGSKVITRSVNSTIEPSTTTTSSVSQDVMVSLHNPALQTLMQSLIKTAIEGAKSQTQLAETSLSSKLHKAASTVAKFDGkN 131
                 67777777777887777777777777777778888888888889999999999999999999999999988888888888888888876644 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.05
      DUF637   7 aslasqAavslinNkGdlsktlkdlg 32 
                 ++l  + a++l    Gdlsktl + +
  CCD24430.1 252 MGLGETNAAQLLGEIGDLSKTLDECQ 277
                 67777889999999********9875 PP

>> Retrotrans_gag  Retrotransposon gag protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.2   2.8e+03      54      78 ..     130     154 ..      79     181 .. 0.59
   2 ?   12.1   0.0   7.9e-05      0.18      13      79 ..     177     237 ..     131     254 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.2
  Retrotrans_gag  54 sslrQgtesvreYvtrfktladqld 78 
                     +++  +++   e v+r++ +a ++d
      CCD24430.1 130 KNFYDPEKDWVEWVARLRNVAMDID 154
                     3333444444455555555555555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 7.9e-05
  Retrotrans_gag  13 swlkslvarsidasesWkdlkkaflktflpserkdqleeelsslrQgtesvreYvtrfktladqlde 79 
                     + + +++++     +s +d+kk++++   + + + ++ + + s+r     v++Y +rf++l + l+ 
      CCD24430.1 177 ELFLRHKDE----LKSLDDFKKVMMSASTN-SPYWKSAKAITSIRF-GGDVEDYNRRFNRLKSSLPA 237
                     444444433....45689*******99999.556666666******.99*************99996 PP

>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00044         1      12      76 ..      60     126 ..      55     139 .. 0.85
   2 ?    1.4   0.0      0.15   3.4e+02      42      76 ..     271     305 ..     254     322 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00044
      ApbA_C  12 inaainpltalldckngell...espelralvrallkEalavaeaegvelseerleeaveavlektaa 76 
                 +n++i+p t+ + +  ++++   ++p+l+ l+++l+k a++ a+++  +l e +l  ++++++ ++a+
  CCD24430.1  60 VNSTIEPSTTTTSSVSQDVMvslHNPALQTLMQSLIKTAIEGAKSQT-QLAETSLSSKLHKAASTVAK 126
                 79***********9999999999********************9988.67777677777777776665 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.15
      ApbA_C  42 allkEalavaeaegvelseerleeaveavlektaa 76 
                 + l+E+ ++a+ +  +l+ e+ ++  +a + k+++
  CCD24430.1 271 KTLDECQQIATNLSFKLKRESSDDSFHARVGKKRK 305
                 5689**********999999988888888877665 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       4.8   1.1e+04      53      62 ..     101     110 ..      84     126 .. 0.46
   2 ?   12.2   0.0   9.2e-05      0.21      25      65 ..     253     292 ..     249     318 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.8
  5_3_exonuc  53 ekklkekLee 62 
                 + k +++L+e
  CCD24430.1 101 GAKSQTQLAE 110
                 2233333333 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 9.2e-05
  5_3_exonuc  25 giGektAakLlkeygsleeilenldelkekklkekLeenke 65 
                 g Ge  Aa+Ll e+g+l + l++ +++++ +l  kL+++  
  CCD24430.1 253 GLGETNAAQLLGEIGDLSKTLDECQQIAT-NLSFKLKRESS 292
                 99*********************999886.77777766543 PP

>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.4   0.00043      0.96       8      21 ..     325     338 ..     319     339 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00043
  zf-C2H2_10   8 YChetGHtRAkCek 21 
                  C+etGH  AkC  
  CCD24430.1 325 RCNETGHFAAKCPS 338
                 5***********86 PP

>> eIF3g  Eukaryotic translation initiation factor 3 subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.9   4.2e+03      68      80 ..      71      96 ..      57     124 .. 0.51
   2 ?   12.3   0.9   7.4e-05      0.17      93     123 ..     309     340 ..     270     342 .] 0.60

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.9
       eIF3g 68 tttvgeevelkl.............e 80
                t +v+++v ++l             +
  CCD24430.1 71 TSSVSQDVMVSLhnpalqtlmqsliK 96
                34455777666644444434433330 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 7.4e-05
       eIF3g  93 ekaklkkk.ekklvkCriCk.gdHfTskCPykd 123
                  +++++ + ++k  +C  C+   Hf +kCP k+
  CCD24430.1 309 LANRITPNmTAK-SRCYRCNeTGHFAAKCPSKS 340
                 333344343344.79****7699*******996 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.7   0.00068       1.5       4      22 ..     322     340 ..     319     342 .] 0.91

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00068
                 B-TTT-SSBS-TTT---SE CS
   zf-CCHC_5   4 lCpRCkkgkHwardChskf 22 
                 +C RC    H a  C sk 
  CCD24430.1 322 RCYRCNETGHFAAKCPSKS 340
                 9****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2656.85
//
Query:       CCD24431.1  [L=148]
Description: hypothetical protein NDAI_0D01180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-46  155.4   5.0    8.6e-46  155.2   5.0    1.0  1  Swm2      Nucleolar protein Swm2


Domain annotation for each model (and alignments):
>> Swm2  Nucleolar protein Swm2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   5.0   4.8e-50   8.6e-46       1     130 []      18     145 ..      18     145 .. 0.99

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 4.8e-50
        Swm2   1 ldnltdlekipkeysplLspyyeaiakdeelkkkalkkCkevfekweekddavdkevvkrcldlwlvlkgkeYklkeeeslsNliieevdvsevks..s 97 
                 l+n++dl+ i+++y+++L+py+eai+kd++l++ a+kkCk++fe+w +++d   ke+ +r++++w++l+g+ Y+l e + ++Nlii+evd++e+++  +
  CCD24431.1  18 LNNFDDLNLISENYTEFLLPYFEAISKDNKLRRLAKKKCKNYFERWVSTND---KEISTRYQEFWFILNGTFYEL-EGNLFHNLIINEVDIKEYENvlN 112
                 79************************************************9...*********************.*********************99 PP

        Swm2  98 elerlefdestnkliknpLnNLilEEvevtdfv 130
                 ++++ ef+++t+k++ npLnNLilEEvevtd+v
  CCD24431.1 113 NQAKKEFEPDTGKPLPNPLNNLILEEVEVTDYV 145
                 ********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1067.67
//
Query:       CCD24432.1  [L=283]
Description: hypothetical protein NDAI_0D01190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-27   95.0   0.1    3.6e-27   94.0   0.1    1.5  1  DUF2373        Uncharacterised conserved protein (DUF2373)
  ------ inclusion threshold ------
       0.07   13.2   0.0       0.18   11.9   0.0    1.6  1  Biotin_carb_C  Biotin carboxylase C-terminal domain
          5    5.7   7.0         11    4.5   1.7    2.2  2  CENP-I         Mis6


Domain annotation for each model (and alignments):
>> DUF2373  Uncharacterised conserved protein (DUF2373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.1   6.1e-31   3.6e-27       1      60 [.      94     188 ..      94     190 .. 0.99

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 6.1e-31
     DUF2373   1 eYLiqfykdrsn...................................WKFsKqkQnwLlkhlfdaeeipseyfellleYlkglkGgarerlleea 60 
                 +YLi+fyk+r++                                   WKFsKqkQnwL+kh+f+ eeipsey++ll++Y+k+l G+++++l+e++
  CCD24432.1  94 RYLIEFYKSRVEntlpkelyalenvklnfpgndeddkidpasgvieiWKFSKQKQNWLIKHFFNMEEIPSEYDPLLISYFKDLPGKSKDDLSEKC 188
                 7*********************************************************************************************9 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     3e-05      0.18       8      51 ..     126     169 ..     123     175 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
                    ETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEE CS
  Biotin_carb_C   8 dpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsll 51 
                    d ++++ p+sG ++ +++ ++++ ++ +++ +  e++++yD+ll
     CCD24432.1 126 DEDDKIDPASGVIEIWKFSKQKQNWLIKHFFNMEEIPSEYDPLL 169
                    5678899***********************************98 PP

>> CENP-I  Mis6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.3    0.0024        14      36      95 ..      65     121 ..      33     164 .. 0.70
   2 ?    4.5   1.7    0.0019        11      22      86 ..     197     261 ..     179     269 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0024
      CENP-I  36 leeksseedsesaddqkkdseedslkkalryfekvqkkvslkknevlekhlktvenvalk 95 
                  + k+s +  +  +dq+  ++ ++lk  lry+    k+   + +++l k l ++env l+
  CCD24432.1  65 SKLKKSGKREKLPKDQRITKKSKVLKDQLRYLIEFYKS---RVENTLPKELYALENVKLN 121
                 2233333444566799999999*********9766543...557899999*9*9999887 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0019
      CENP-I  22 awrvkekvdssksvleeksseedsesaddqkkdseedslkkalryfekvqkkvslkknevlekhl 86 
                 ++  ke+++ s  v++++++e  +++ +d++  +e++  +k  + + k++++v  +k+ +++ hl
  CCD24432.1 197 EYVEKEEAKMSAIVNGDENKEGTNDEGNDDEASKEDEIKEKKPEDISKIEIEVVPNKEATIRSHL 261
                 3445677777777888888888778888888788888888999*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1121  (0.0625244); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2035.32
//
Query:       CCD24433.1  [L=322]
Description: hypothetical protein NDAI_0D01200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-08   35.1   0.0    4.4e-07   30.5   0.0    2.1  1  HAD              haloacid dehalogenase-like hydrolase
     0.0024   17.3   0.0       0.78    9.1   0.0    2.3  2  Put_Phosphatase  Putative Phosphatase


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   4.9e-11   4.4e-07       1     184 [.       6     236 ..       6     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 4.9e-11
         HAD   1 alfDfDgTLldgdsle..lllrfllrrgaprlwralreklllal..................................frellrldraglaellea... 60 
                 +++DfD T+++ d+    + l +++++g ++ w   + k++ a                                   +                a   
  CCD24433.1   6 IISDFDETITTRDTTSlvASLPYKVKQGLSPPWSYFKDKYMDACveykkenanciqnrklpllpfldvsrnhgfrsafN----------------Aefv 88 
                 689******9998888777778899999999999999998888888889988888888888855444444444444433................4555 PP

         HAD  61 ....................llagls.eelaaelerfvaevirpklldpgalella.ahraaGdrvvvvSgg.lrplvepllaelg..adevlatelev 134
                                     l++g +  ++ +++  ++  +  p l++pg++ +++  ++ +++  ++vS +  ++++  +l+  +  + ++ + +l +
  CCD24433.1  89 yqsdskfvelksiseieeynLFKGIThHQVQEYASNLL-NEEDP-LIRPGFMNFISsNVKPENF--YIVSVNwSKEFIYSILRYANidPSHIFCDHLLS 183
                 66666666666669999888999999777777777777.45555.588********88877777..******779*******98888899********* PP

         HAD 135 dd.rltgelglegkpvrgegkvaalrewlaaegegidlee....vvayGDspsDl 184
                  +  +tg    +  +  g +k++ l+  l  +++++dl +    v+++GDs++D+
  CCD24433.1 184 SGsEYTGI--FSKELMTGCDKANILDTILLSRSNDLDLLSkntrVWYIGDSETDI 236
                 ********..*****************9999*****999999************8 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0   0.00063       5.7       2      56 ..       5      56 ..       4     123 .. 0.63
   2 !    9.1   0.0   8.7e-05      0.78     151     211 ..     202     265 ..     197     288 .. 0.72

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00063
  Put_Phosphatase  2 lvvfDFDktiidedsdnwvvdelpatelfeelretlrkglwnelmdrvlkelheq 56
                     +++ DFD+ti   d+ +  v  lp + + + l +     +  ++md  +++ +e+
       CCD24433.1  5 IIISDFDETITTRDTTSL-VASLPYKVK-QGLSPPWS-YFKDKYMDACVEYKKEN 56
                     5788*********99665.567887766.55655544.34445555555444433 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 8.7e-05
  Put_Phosphatase 151 Kgkvleelvaeqare...gveyerliYvGDganDlCpvlklrekDvampRkgfpleklisenks 211
                      K ++l+ ++ +++++     + +r+ Y+GD+  D+ p l+   +  +++   ++l+k ++ ++ 
       CCD24433.1 202 KANILDTILLSRSNDldlLSKNTRVWYIGDSETDILPLLHPSVNGAILINPLHELKKYLTISRD 265
                      67888888888877632234789**************998777777776666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2495.59
//
Query:       CCD24434.1  [L=291]
Description: hypothetical protein NDAI_0D01210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-94  315.0  16.9    2.3e-94  314.8  16.9    1.0  1  Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family
  ------ inclusion threshold ------
        1.4    8.9  12.6       0.33   10.8   3.4    2.3  2  DUF2721          Protein of unknown function (DUF2721)


Domain annotation for each model (and alignments):
>> Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.8  16.9   2.6e-98   2.3e-94       1     206 [.      78     283 ..      78     284 .. 0.99

  Alignments for each domain:
  == domain 1  score: 314.8 bits;  conditional E-value: 2.6e-98
  Gpr1_Fun34_YaaH   1 fggtlnpglapvpkrkfaNPaPlgllafalttfvlslvnlgargitepnvvvglalfyGGlvqllaGiwefavgntFgatalssYGgFwlsyaa 94 
                      fggtlnpglap++ ++faNPaPlgl+afalttfvls++n +a+git+pnvvvgla+fyGG+vq++aGiwe+a +ntFgatal+sYGgFwls++ 
       CCD24434.1  78 FGGTLNPGLAPTSVHRFANPAPLGLSAFALTTFVLSMFNSKAQGITTPNVVVGLAMFYGGVVQIIAGIWEVALENTFGATALCSYGGFWLSFGS 171
                      89******************************************************************************************** PP

  Gpr1_Fun34_YaaH  95 ilipgfgilaaYeedeeelnnalglyllgwfiftfllllatlrstvalfllfffldltflllaigeltgsakvlkAggvfgiiaaflawYnala 188
                      i+ip+fgil+aY+++e+el nalg+yllgw+iftf l ++t++stv++f+lff+l +tflll+ige++g+++v++Agg++g+i+af+awYna+a
       CCD24434.1 172 IYIPWFGILDAYTDKESELGNALGFYLLGWCIFTFGLSVCTMKSTVMFFALFFLLGVTFLLLSIGEFSGESRVTRAGGILGVIVAFIAWYNAYA 265
                      ********************************************************************************************** PP

  Gpr1_Fun34_YaaH 189 glatkensyftlpviplp 206
                      gla+k+nsy+ ++++plp
       CCD24434.1 266 GLANKQNSYILAHPFPLP 283
                      *****************9 PP

>> DUF2721  Protein of unknown function (DUF2721)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.8    0.0093        83      70     121 ..     103     153 ..      98     174 .. 0.63
   2 ?   10.8   3.4   3.7e-05      0.33      71     123 ..     193     245 ..     187     248 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.0093
     DUF2721  70 lvlsallvvlvvlllflsallsldlsllaailfvlalllllvslllflrEir 121
                  +++++++vl+++   ++ ++ +   ++  ++f  +++ +++++  +++E +
  CCD24434.1 103 SAFALTTFVLSMFNSKAQGIT-TPNVVVGLAMFYGGVVQIIAGIWEVALENT 153
                 445555555555555554443.334455566677777777777766666655 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 3.7e-05
     DUF2721  71 vlsallvvlvvlllflsallsldlsllaailfvlalllllvslllflrEirls 123
                 +l++ l+  ++++  ls+ +  ++ ++ a++f+l++ +ll+s+  f  E r++
  CCD24434.1 193 ALGFYLLGWCIFTFGLSVCTMKSTVMFFALFFLLGVTFLLLSIGEFSGESRVT 245
                 6889999*************************************999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2337.74
//
Query:       CCD24435.1  [L=618]
Description: hypothetical protein NDAI_0D01215 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-69  232.2   4.6    4.9e-69  231.2   4.6    1.6  1  Flo11     Flo11 domain


Domain annotation for each model (and alignments):
>> Flo11  Flo11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.2   4.6   2.8e-73   4.9e-69       1     150 []      41     191 ..      41     191 .. 0.99

  Alignments for each domain:
  == domain 1  score: 231.2 bits;  conditional E-value: 2.8e-73
                 S-TTSB-HHHHHTTTB--EEEEEEEEEEEETTEEEEEEEEEESS---GGGEEEEEEES-SSS-S-EEEEETTTTEE--S-TTEEEEEEEEE--.BSSSS CS
       Flo11   1 gcpdldfewhakntnipkydldvesvewvkdnlYevtihvkgeeqidlkylssLkiigisgpdstvvlygknektslidnptdftatfqvygd.ekdnc 98 
                 gcpdl+f wha++tn++ky+ld++ vew++dnlYe+ti+v+geeqidlkyl+sLk+ig++gp+st++lygkne+t lidnpt++t+tfqvyg  +kd c
  CCD24435.1  41 GCPDLNFGWHATTTNLLKYYLDILYVEWLGDNLYEITIQVTGEEQIDLKYLYSLKVIGVQGPKSTIQLYGKNENTFLIDNPTNYTVTFQVYGGaKKDGC 139
                 6********************************************************************************************9***** PP

                 EEE----EEEEEES-GGGGGGGGG--SB-SEEEEEB-SS-B-TTSBBSSSB- CS
       Flo11  99 kvwlPnFqiqyeylqgdaaqysetwkwgttsFdlstgcdnydnqgnsqtdfp 150
                 ++wlP+Fqiqyeylqgda++y++ wkwgtt+Fdlstgc+nydnq nsqtdfp
  CCD24435.1 140 NIWLPDFQIQYEYLQGDASKYQDSWKWGTTTFDLSTGCTNYDNQMNSQTDFP 191
                 ***************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 4817.61
//
Query:       CCD24436.1  [L=288]
Description: hypothetical protein NDAI_0D01220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-06   26.9   0.0    6.2e-06   26.0   0.0    1.4  1  RVT_2           Reverse transcriptase (RNA-dependent DNA poly
     0.0058   16.6   0.1          2    8.3   0.0    2.2  2  Glyco_hydro_44  Glycoside hydrolase family 44


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   6.9e-10   6.2e-06     193     241 ..       1      50 [.       1      51 [. 0.94

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 6.9e-10
       RVT_2 193 lkdlgkvskfLGieiaq.eaggiklsladyiakvvkkfeltdaktvatPl 241
                 +kdlg+++kfLG +  q + g+i+l+++dyi+k+ + ++  + k+++ P+
  CCD24436.1   1 MKDLGPINKFLGTNCSQdKDGNITLKMTDYITKATDAMDNESKKPTYNPM 50 
                 9****************77899***************9999999999998 PP

>> Glyco_hydro_44  Glycoside hydrolase family 44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0   0.00087       7.8      21      51 ..       8      38 ..       2      61 .. 0.81
   2 !    8.3   0.0   0.00022         2      99     150 ..     186     235 ..     129     252 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00087
                    ESHHHHHTT--GGEEEEE--SSEEES--.SE CS
  Glyco_hydro_44 21 defletnkkagaksllTvpligyvakdkasg 51
                    ++fl+tn +++++  +T+ +++y++k++++ 
      CCD24436.1  8 NKFLGTNCSQDKDGNITLKMTDYITKATDAM 38
                    68999********************998654 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00022
                     EEEHHH.....HHHHHHHHH--.TSTTS--EEEESS-GGGHHHH-TTT--S-- CS
  Glyco_hydro_44  99 svyadeeftkewvnhlvkklgs.asatgvkfysLDNEpelWssTHrdvhpekv 150
                       ++++   + w+  l +++g   s    ++  +DNEp++  + H+ +h  + 
      CCD24436.1 186 IAASEAVLETMWLYNLLEHMGYpLS---ENLLMIDNEPAIKLASHPILHSRTK 235
                     3334444556799999999999544...47889****************9743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       454  (0.0253221); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2315.08
//
Query:       CCD24437.1  [L=176]
Description: hypothetical protein NDAI_0D01230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-37  128.0   1.6    2.5e-37  127.7   1.6    1.1  1  PRA1      PRA1 family protein
  ------ inclusion threshold ------
       0.37    9.5   3.3       0.49    9.1   3.3    1.4  1  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> PRA1  PRA1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   1.6   2.8e-41   2.5e-37       2     141 ..      32     171 ..      31     173 .. 0.97

  Alignments for each domain:
  == domain 1  score: 127.7 bits;  conditional E-value: 2.8e-41
        PRA1   2 elaplRpwsefldlsrfslPkslskatsRvkkNllyfrtNYlivvllvlllslltnplslivllllvlawlflyflrseplvlfgrelsdrvvlivllv 100
                 +l++lR+ +ef++++++s+P++++++++Rv+ Nl+++++NY++++ l+++++lltn l l+v++l++++++ ++ lr ++lv+   ++++++++++ll+
  CCD24437.1  32 KLSTLRSPQEFFNVKNMSKPQNVGDLQNRVSFNLNHYSSNYALIIGLLSIYTLLTNLLLLFVIILVFFGIAGINRLRGQDLVTPLGTFKTSQLYTALLC 130
                 689************************************************************************************************ PP

        PRA1 101 vsvlllfltgavlvllwalliglllvllHAsfrkrndkfkd 141
                 ++++l fl+++++++lw +++++++v+ HA++++++ + ++
  CCD24437.1 131 LALPLGFLASPISTMLWLIGASAVTVFGHAALMEKPVESVF 171
                 *********************************99988766 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.3   5.5e-05      0.49     349     422 ..      18     102 ..       1     166 [. 0.65

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 5.5e-05
     DUF2207 349 kakkfkkalkkwksavkk..kergyfdkkg...........kkklkklsalglgliilglilillallllvlllvfllilllillli 422
                   +++k+++++++ ++    + +++f+ k+           ++  + l+ ++  +++++ +l++++ll+    l +++i+l++++++
  CCD24437.1  18 SVENMKNQFQSLQTKLSTlrSPQEFFNVKNmskpqnvgdlqNRVSFNLNHYSSNYALIIGLLSIYTLLTNL--LLLFVIILVFFGIA 102
                 55778888888888888899777777777777777788887777777777777777777777777765432..22222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1380.39
//
Query:       CCD24438.1  [L=661]
Description: hypothetical protein NDAI_0D01240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-49  166.5   2.8      1e-48  165.8   2.8    1.3  1  Peptidase_M1     Peptidase family M1 domain
    2.6e-33  114.5   0.2    8.4e-33  112.8   0.0    2.0  2  Leuk-A4-hydro_C  Leukotriene A4 hydrolase, C-terminal
    4.1e-28   98.8   0.0    6.7e-28   98.1   0.0    1.3  1  Peptidase_M1_N   Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
      0.049   13.3   0.1       0.27   10.9   0.1    2.1  2  Peptidase_MA_2   Peptidase MA superfamily
      0.066   12.7   0.0       0.12   11.9   0.0    1.3  1  Peptidase_M64    IgA Peptidase M64
       0.23   11.9   1.5        4.8    7.6   1.4    2.4  1  Peptidase_M61    M61 glycyl aminopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.8   2.8   3.4e-52     1e-48       2     206 ..     262     465 ..     261     478 .. 0.84

  Alignments for each domain:
  == domain 1  score: 165.8 bits;  conditional E-value: 3.4e-52
                   HHHHHHHHHHHHHHHHTS--SSSEEEEEEE.SSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHH CS
  Peptidase_M1   2 alevtkkllefleeyfkvpYplpkldlval.pdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEG 97 
                   ++  +++ + +++e++ ++Y++ ++d+++  +++++g+ME++++++++++l+++d         +s+ +viaHElaH+W+GnlVt+++W+++wLnEG
    CCD24438.1 262 EFSDDVEKFIQAAENIIFDYEWGTYDILINvNSYPYGGMESPNMTFATPTLIAHD---------KSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEG 349
                   55666778888899999*********98866************************.........8899***************************** PP

                   HHHHHHHHHHHHHSC..CCHCHHHHHHHCHHHHHHHHTSTTHHHSS...GG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHCT.HHHHHHHHHHHHHH CS
  Peptidase_M1  98 fatyleylildklep..ewevseqllleeveealsedaldeshpit...qevekpseidevFdsiaYeKGasllrmlekllg.eevFqkglksYlke 188
                   +++yle++i+ ++++  ++++s+ +    +  ++s  a+++ ++++   q++++ +++de+F+s++YeKG++ll  le+llg +++F+ ++k+Y+k+
    CCD24438.1 350 WTVYLERRIVAAIHGesTRHFSALI--GWNDLENSIHAMRNPNRFStlvQNLNDGTDPDEAFSSVPYEKGFNLLFFLENLLGgTKEFDPFIKHYFKK 444
                   ***************5333344444..44444556666777666666669*******************************99************** PP

                   CTTEEE-HHHHHHHHHH...C CS
  Peptidase_M1 189 fkyknaetedlwdalee...a 206
                   f+yk+++t +++d+l e    
    CCD24438.1 445 FSYKSLDTFQFLDTLFEfftD 465
                   **************9985421 PP

>> Leuk-A4-hydro_C  Leukotriene A4 hydrolase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.8   1.4e+04      37      60 ..     332     355 ..     317     362 .. 0.75
   2 !  112.8   0.0   2.8e-36   8.4e-33       1     113 []     530     655 ..     530     655 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.8
                      ---HHHHHHHHHHHHHTT-GGGHH CS
  Leuk-A4-hydro_C  37 skNaeirlrwlqlalkakyeeavp 60 
                      s+N    ++w  + l+++++ +++
       CCD24438.1 332 SGNLVTNCSWNHFWLNEGWTVYLE 355
                      667777888888888888877765 PP

  == domain 2  score: 112.8 bits;  conditional E-value: 2.8e-36
                      --HHHHHHHHHHHHTT-...........GGG-HHHHHHHHHHTI..IIT---HHHHHHHHHHHHHTT-GGGHHHHHHHTTT---HHHHHHHHHH CS
  Leuk-A4-hydro_C   1 fssnqkvlfLekLleke...........kplpaekleaLdelYk..lseskNaeirlrwlqlalkakyeeavpevaeflgsqGrmkfvrplYra 81 
                      f+snq+vlfLe L++ke           ++  + ++++L ++Y+  +++s+Naei ++ +++ + ++ + +++++a++lg++Grmkfvrp+Yr 
       CCD24438.1 530 FNSNQIVLFLEVLVQKEflghnapggydWANYPLASSSLLSIYSekIAQSQNAEIIFKTFKFEILCALNIYYEKLAAWLGTVGRMKFVRPGYRL 623
                      79*************999**********9999***********777************************************************ PP

                      HHTT-HHHHHHHHHHHGGGS-HHHHHHHHHHT CS
  Leuk-A4-hydro_C  82 LnkvdrdlAketFektkdfyhpiarklvekdL 113
                      L +vd++lA++tF+k+kd+yhpi++ lv++dL
       CCD24438.1 624 LDSVDHKLAVDTFHKFKDSYHPICKMLVSQDL 655
                      ******************************98 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   2.3e-31   6.7e-28       4     186 .]      61     230 ..      53     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 2.3e-31
                     EEEEEEEEETTTTEEEEEEEEEEEES.S-ECEEEEEESSEEEECEEEEECTTCTCEEEEEEEECTTTTCEEEEECCEEETTCEEEEEEEEEEE-B CS
  Peptidase_M1_N   4 hYdldlkidlkektfkGsvtitlqlk.eatseivldakdlkiksvslsaevksesvkidfkieqkdeelltiklkeslqqtskytLeieyegeln 97 
                     h +l+l+i ++e  +kG+v  +l+++  + +ei+ld+++l+i+s++l+ ++++e+ ++  +i +  + ++tik ++   ++++++L  ++++  +
      CCD24438.1  61 HTRLELQILFDECIVKGRVIYNLSARgVDFHEIALDSSFLNIESIQLN-NETIENFEVLPRI-EPLGSKITIKPPTI--PKEPFELGLTFTT--T 149
                     456***********************99**************999999.8889998888775.56677799999995..56***********..* PP

                     SSSSEEEEEEEEETSCEEEEEEEE-TTTTGGGTS-B--STTSEBEEEEEEEEETTSEEEESSECCCEEEETTCEEEEEEEEEESBEGGG CS
  Peptidase_M1_N  98 dklaGlykstYtdkgekkvvvvTqfeatdARsafPCfDePsvKAtftisikapkeetalSnmpeeeseklengqkiteFeqtpkmstYL 186
                     d +++l+  t +++   +++v++q+ea++ARs+fPCfD+PsvK+ f+ si++p + +++S+++        +  +i+ Feq++++++YL
      CCD24438.1 150 DRCTALQWLT-KKQTSGMPYVFSQLEAIHARSLFPCFDTPSVKSPFSASITSPLP-VVFSGISTG------SKNNIYCFEQKVPIPAYL 230
                     *******655.34556689************************************.******999......22359************8 PP

>> Peptidase_MA_2  Peptidase MA superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1     9e-05      0.27      69     106 ..     322     358 ..     304     366 .. 0.85
   2 ?   -1.7   0.0      0.61   1.8e+03     161     183 ..     390     412 ..     381     421 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9e-05
  Peptidase_MA_2  69 avvhelahkvtnqitanpyndlpvwlneglsmyaegnl 106
                      ++helah  ++++ +n   +   wlneg ++y e  +
      CCD24438.1 322 VIAHELAHSWSGNLVTNCSWN-HFWLNEGWTVYLERRI 358
                     589********9999987665.57*********99765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.61
  Peptidase_MA_2 161 eklsdlleefaegasadeallav 183
                     +++s l++++ +g+  dea+ +v
      CCD24438.1 390 NRFSTLVQNLNDGTDPDEAFSSV 412
                     79****************99876 PP

>> Peptidase_M64  IgA Peptidase M64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     4e-05      0.12     109     154 ..     284     331 ..     254     335 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4e-05
                    S--SEEEEEES-SS--EEEETTT.E..EEEESSSTTHHHHHHHHHHHHT CS
  Peptidase_M64 109 apydlvivlvNtekYgGgGifnl.y..atvaadnsyatyilvHElgHsl 154
                    ++yd +++ vN+  YgG    n+ +   t+ a+++    +++HEl+Hs 
     CCD24438.1 284 GTYD-ILINVNSYPYGGMESPNMtFatPTLIAHDKSNIDVIAHELAHSW 331
                    5566.568899******9999986544345556666888999*****96 PP

>> Peptidase_M61  M61 glycyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.4    0.0016       4.8       3      53 ..     320     359 ..     318     375 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0016
                    HHHHHHHHHHTTBTTTB-BGGGSS---SS----STHHHHTHHHHHHHHHHH CS
  Peptidase_M61   3 lgllaHEyfHsWnvkrirPaelepfdyekenytellwvaEGlTsYygdlll 53 
                    ++++aHE+ HsW ++             ++   +  w+ EG+T Y++  ++
     CCD24438.1 320 IDVIAHELAHSWSGNL-----------VTNCSWNHFWLNEGWTVYLERRIV 359
                    6889999999998854...........345556677777888777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 5087.72
//
Query:       CCD24439.1  [L=210]
Description: hypothetical protein NDAI_0D01250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1022  (0.0570026); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1523.13
//
Query:       CCD24440.1  [L=460]
Description: hypothetical protein NDAI_0D01260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-81  271.9   2.4    3.2e-80  269.1   0.9    2.2  2  ALG11_N          ALG11 mannosyltransferase N-terminus
    2.3e-14   53.3   0.0    4.2e-14   52.4   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
     0.0003   20.8   0.0    0.00054   20.0   0.0    1.4  1  Glyco_transf_4   Glycosyltransferase Family 4
    0.00081   19.8   0.0     0.0024   18.3   0.0    1.8  2  Glyco_trans_1_4  Glycosyl transferases group 1
     0.0026   17.1   0.1     0.0051   16.2   0.1    1.4  1  DUF2220          Uncharacterized protein conserved in bacteri
  ------ inclusion threshold ------
       0.18   11.7   0.0        0.3   11.0   0.0    1.2  1  DUF2399          Protein of unknown function C-terminus (DUF2


Domain annotation for each model (and alignments):
>> ALG11_N  ALG11 mannosyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.1   0.9   1.1e-83   3.2e-80       3     209 .]     102     297 ..     100     297 .. 0.97
   2 ?    2.0   0.0     0.063   1.9e+02      30      88 ..     319     379 ..     312     386 .. 0.70

  Alignments for each domain:
  == domain 1  score: 269.1 bits;  conditional E-value: 1.1e-83
     ALG11_N   3 ivgffHPycnaggGGErVLwaavkalqkekkkvkivvYtgdlevskeeilekvkerfnieldkkrikfvaLkkrklveaktyprfTLlgqslgsvllal 101
                 i+gffHPycnaggGGE+VLw+av+a++++++++++++Ytgd++++ ++il++v+e+f+++ld++ri f++Lk r+lv++kt+prfTLlgq +gs++l++
  CCD24440.1 102 IYGFFHPYCNAGGGGEKVLWKAVEATLTDDSTNIVLIYTGDIDTDGATILRNVQEKFDYTLDSNRIVFIYLKYRTLVDDKTWPRFTLLGQGFGSIILSI 200
                 79************************************************************************************************* PP

     ALG11_N 102 eallklvpdvfidtmGyaftyplvkllagvkvvaYvHYPtistdmlkrvkereakynnkeavakskllsllkllYyklfallYslvgsladvvmvnssW 200
                 eal+++ pdv++dtmGy+f yp+v++l g+++v+Y+HYP+istdmlk++++           + +++++llk++Y+++f+l Y+++g++++v+++ns+W
  CCD24440.1 201 EALFTCPPDVWCDTMGYPFGYPFVSFLLGIPIVTYTHYPIISTDMLKKLRK-----------QPRTMKNLLKYYYWRIFMLSYQAIGKYVTVIVTNSTW 288
                 *************************************************55...........34567789***************************** PP

     ALG11_N 201 Tknhikslw 209
                 T+nhik++w
  CCD24440.1 289 TNNHIKQIW 297
                 ********* PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.063
     ALG11_N  30 kekkkvkivvYtgdlevskeeilekvkerf.nieldkkrikfvaLkk.rklveaktyprfT 88 
                 ++++k+++vv ++    ++++++ +  + f n + d k++++v+L + r+++++++ + +T
  CCD24440.1 319 ETSRKNQCVVLAQFRPEKRHKLIIRSYHSFmNKHPDCKPLNLVFLGStRSVIDKAYVKELT 379
                 56678899999887666666666555555515557779*******9956677777777777 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   1.4e-17   4.2e-14      13     135 ..     321     454 ..     311     458 .. 0.86

  Alignments for each domain:
  == domain 1  score: 52.4 bits;  conditional E-value: 1.4e-17
                      TT-EEEEEESS-TTTTTHHHHHHHHHCCCCC..HCSCEEEEEES.......STTHHHHHHHH.HHHCTTCG.GGEEECCHSSSHHHHHHCESEE CS
  Glycos_transf_1  13 ekkkiilsvgrlekeKgvdllikafallkkq..lnpnvklviaG......ngeeekelkkla.eelelsdn.viflgevsredleellknadif 96 
                      ++k+  ++++++++eK+++l+i++++++  +    ++++lv+ G      ++++ kel +l+ eel++ ++ ++f    ++e+++++l+  + f
       CCD24440.1 321 SRKNQCVVLAQFRPEKRHKLIIRSYHSFMNKhpDCKPLNLVFLGstrsviDKAYVKELTNLCfEELKIPKHlIEFKTDCPYEEIKAILNE-STF 413
                      6789999*********************87744555678*********************974777777772457777889999999998.677 PP

                      EEEESS.BSS-HHHHHHHHTT--EEEET.TTTHCHHCHTTT CS
  Glycos_transf_1  97 vlpsis.EgfGivllEAmaaglpviasn.aggpaevvkdge 135
                       +++++ E+fGi+++E++a+gl+ ++++ ag+++++v++++
       CCD24440.1 414 GINAMWnEHFGIAVVEYLASGLIPLVHAsAGPLLDIVVPWD 454
                      7787888*********************99******99875 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.8e-07   0.00054      49     169 ..     184     312 ..     152     313 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.8e-07
  Glyco_transf_4  49 pllkrllrslaflrrlrrllkrekpDvvHahspaalgaallalrrrlgiplVltvHglye...........krllkarlkplsrllralerrl.. 130
                     p +  l++ + ++    ++l    pDv    + +++g+  +  +  lgip+V++ H +             +r  k+ lk ++ ++++l      
      CCD24440.1 184 PRFTLLGQGFGSIILSIEALFTCPPDVWCDTMGYPFGYPFVSFL--LGIPIVTYTHYPIIstdmlkklrkqPRTMKNLLKYYYWRIFML---Syq 273
                     45555666667777777788888999996666688889999999..8***************999777655333333333322222233...134 PP

  Glyco_transf_4 131 ..lrradrviavSeatadelrerygvppekitVipnGvDle 169
                        + +  ++++S +t +++++    +  + t+i+++  +e
      CCD24440.1 274 aiGKYVTVIVTNSTWTNNHIKQ-IWSD-FPTTIIYPPCSTE 312
                     46999999**************.7766.4899999987776 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.5     1e+04      93     107 ..      12      24 ..      10      42 .. 0.70
   2 !   18.3   0.0     8e-07    0.0024       4     100 ..     326     440 ..     323     455 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.5
                      TT-EEEE-TGGGTTT CS
  Glyco_trans_1_4  93 aglpvVatdvggiae 107
                       glp++ t++  +++
       CCD24440.1  12 IGLPIIITRI--LCN 24 
                      5999999998..344 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 8e-07
                      EEEES---GG.GTHHHHHHHHHHHH.H..H...EEEEEES---.........HHHHHHHT...T-T.T.EEEE---..THHHHHHHH-SEEEE- CS
  Glyco_trans_1_4   4 ilfvGrleenvkgvdllleavpllrkk..d...vrlvivGdgprp.......eeleelaa...gleer.veftGfv..edlaellaaadvfvaP 79 
                       + + ++ +++k+++l+++  +   +k  d   ++lv+ G+  r+       +el +l+    ++ ++ +ef      e+++++l++++  ++ 
       CCD24440.1 326 CVVLAQF-RPEKRHKLIIRSYHSFMNKhpDckpLNLVFLGST-RSvidkayvKELTNLCFeelKIPKHlIEFKTDCpyEEIKAILNESTFGINA 417
                      5677788.55699999***9966665545377899*****65.4444554555555444254555566799*99999999************** PP

                      -..---SHHHHHHHHTT-EEEE- CS
  Glyco_trans_1_4  80 s..egfglkllEamaaglpvVat 100
                      +  e fg++++E++a+gl   + 
       CCD24440.1 418 MwnEHFGIAVVEYLASGLIPLVH 440
                      **99*************865544 PP

>> DUF2220  Uncharacterized protein conserved in bacteria C-term(DUF2220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.7e-06    0.0051      84     109 ..     133     158 ..     113     166 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.7e-06
     DUF2220  84 kekrlvYWGDiDthGfaILsrlRekl 109
                 ++  l+Y GDiDt+G  IL++++ek+
  CCD24440.1 133 TNIVLIYTGDIDTDGATILRNVQEKF 158
                 344799*****************998 PP

>> DUF2399  Protein of unknown function C-terminus (DUF2399)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0001       0.3      65      93 ..     132     160 ..     122     167 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
     DUF2399  65 aagarlrYhGDfDwpGlaianklaerfga 93 
                  +++ l Y GD D +G +i  +++e+f+ 
  CCD24440.1 132 STNIVLIYTGDIDTDGATILRNVQEKFDY 160
                 57999********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3267.40
//
Query:       CCD24441.1  [L=603]
Description: hypothetical protein NDAI_0D01270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-68  224.3  26.3    8.9e-12   44.6   0.0   10.6 10  Arm            Armadillo/beta-catenin-like repeat
    2.1e-18   66.4  13.5     0.0004   20.8   0.1    8.0  8  HEAT_EZ        HEAT-like repeat
    2.3e-16   59.9   4.9    0.00091   19.6   0.0    7.2  8  HEAT_2         HEAT repeats
    1.4e-11   43.7  12.5    6.7e-08   31.5   2.3    2.7  2  Adaptin_N      Adaptin N terminal region
    1.1e-10   40.4   4.2    7.9e-09   34.2   0.3    2.9  2  KAP            Kinesin-associated protein (KAP)
    2.2e-10   39.8  24.1       0.14   12.4   0.0    9.6  9  HEAT           HEAT repeat
    2.5e-08   33.7  11.0    0.00015   21.4   3.9    3.9  4  Arm_2          Armadillo-like
    1.7e-05   24.3   5.5    0.00057   19.3   1.0    3.5  3  V-ATPase_H_N   V-ATPase subunit H
    1.9e-05   24.7   5.2       0.39   10.8   0.3    5.4  6  V-ATPase_H_C   V-ATPase subunit H
    5.7e-05   23.2  13.3       0.18   11.9   0.2    5.2  5  Cnd1           non-SMC mitotic condensation complex subunit 1
    0.00018   21.2   0.2      0.026   14.1   0.0    3.1  3  Tti2           Tti2 family
    0.00023   21.7   1.0       0.99   10.0   0.0    3.7  2  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
     0.0003   20.8   8.5      0.053   13.5   0.3    4.3  4  DUF3361        Domain of unknown function (DUF3361)
  ------ inclusion threshold ------
       0.04   14.3   4.2         33    4.9   0.0    4.7  5  RasGEF_N_2     Rapamycin-insensitive companion of mTOR RasGEF
       0.43   10.1   4.2        6.4    6.3   0.1    3.3  3  CLASP_N        CLASP N terminal


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.066        79      14      40 ..      73      99 ..      73     100 .. 0.89
   2 !   21.3   0.3   1.6e-07   0.00019      13      40 ..     110     137 ..     105     138 .. 0.93
   3 !   37.1   0.3   1.7e-12     2e-09       1      40 [.     139     178 ..     139     179 .. 0.98
   4 !   25.6   0.0   7.3e-09   8.8e-06       2      40 ..     181     219 ..     180     220 .. 0.95
   5 !   44.6   0.0   7.5e-15   8.9e-12       3      40 ..     223     260 ..     222     261 .. 0.97
   6 !   21.9   0.1   1.1e-07   0.00013      13      41 .]     276     304 ..     265     304 .. 0.89
   7 !   26.3   0.1   4.3e-09   5.2e-06       7      40 ..     311     344 ..     306     345 .. 0.95
   8 !   33.9   0.0   1.7e-11   2.1e-08       6      41 .]     351     387 ..     346     387 .. 0.93
   9 ?    0.3   0.0      0.66   7.9e+02       2      35 ..     390     423 ..     389     428 .. 0.82
  10 !   19.0   0.2   8.5e-07     0.001       7      41 .]     436     470 ..     431     470 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.066
                HHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm 14 vppLvrLLssedeevqeeAawALsNLa 40
                +++L +L +s++ ++q+ Aa A + ++
  CCD24441.1 73 LKALTTLVYSDNLNLQRSAALAFAEIT 99
                578999**************9988776 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1.6e-07
                 HHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  13 avppLvrLLssedeevqeeAawALsNLa 40 
                 +++p + LL+s d ++q +A++AL+NLa
  CCD24441.1 110 VLEPILILLQSNDSQIQIAACAALGNLA 137
                 79999**********************8 PP

  == domain 3  score: 37.1 bits;  conditional E-value: 1.7e-12
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n+enk +++e+G++ pL++ +  +++evq++A+++++NLa
  CCD24441.1 139 NNENKLLIVEMGGLNPLINQMMGDNVEVQCNAVGCITNLA 178
                 89*************************************9 PP

  == domain 4  score: 25.6 bits;  conditional E-value: 7.3e-09
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++nk  +  +Ga+ pL +L +s++ +vq++A++AL N++
  CCD24441.1 181 DDNKSKIATSGALIPLTKLAKSKHMRVQRNATGALLNMT 219
                 68999********************************97 PP

  == domain 5  score: 44.6 bits;  conditional E-value: 7.5e-15
                 HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 en++++++aGavp+Lv+LLss+d++vq  +++ALsN+a
  CCD24441.1 223 ENRKELVNAGAVPILVSLLSSTDPDVQYYCTTALSNIA 260
                 79***********************************8 PP

  == domain 6  score: 21.9 bits;  conditional E-value: 1.1e-07
                 HHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  13 avppLvrLLssedeevqeeAawALsNLaa 41 
                  v  Lv+L++s++ +v+++A+ AL+NLa+
  CCD24441.1 276 LVTKLVNLMDSTSSRVKCQATLALRNLAS 304
                 5778***********************96 PP

  == domain 7  score: 26.3 bits;  conditional E-value: 4.3e-09
                 HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   7 avieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++++aG++p+Lv+L++s++  +  +++++++N++
  CCD24441.1 311 EIVRAGGLPHLVKLIQSDSIPLILASVACIRNIS 344
                 79*******************************8 PP

  == domain 8  score: 33.9 bits;  conditional E-value: 1.7e-11
                 HHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   6 davieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                  ++++aG ++pLv+LL+  ++ee+q+ A+++L+NLaa
  CCD24441.1 351 GLIVDAGFLKPLVNLLDyKDSEEIQCHAVSTLRNLAA 387
                 589********************************96 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 0.66
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawA 35 
                 ++n+++  e+Gav+   +L      +vq e+ ++
  CCD24441.1 390 EKNRKEFFESGAVEKCKELALVSPISVQSEISAC 423
                 67999999******99999999999999887666 PP

  == domain 10  score: 19.0 bits;  conditional E-value: 8.5e-07
                 HHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   7 avieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                  + ++ ++++L+ + +s ++ev  +Aa+AL+NL++
  CCD24441.1 436 DLLDMDILDALIPMTYSANQEVSGNAAAALANLCS 470
                 578899****************************7 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   2.2e-05     0.026       3      55 .]      87     136 ..      85     136 .. 0.87
   2 !   20.8   0.1   3.4e-07    0.0004       2      55 .]     124     177 ..     123     177 .. 0.97
   3 ?    0.4   0.0      0.85     1e+03      33      52 ..     196     215 ..     192     218 .. 0.87
   4 !   11.8   0.0   0.00022      0.27      16      55 .]     223     259 ..     205     259 .. 0.73
   5 !   17.4   0.1   3.8e-06    0.0046      16      55 .]     263     302 ..     260     302 .. 0.94
   6 ?   -0.7   0.0       1.9   2.3e+03      30      44 ..     318     332 ..     313     343 .. 0.73
   7 ?    6.2   0.0     0.012        15      30      55 .]     359     385 ..     356     385 .. 0.88
   8 !    7.6   0.6    0.0045       5.4      28      55 .]     441     468 ..     423     468 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.2e-05
     HEAT_EZ   3 vRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++r+Aa+a++   +    ++ ++  ++l + l lL++ ++ ++ aA+ aLgnl
  CCD24441.1  87 LQRSAALAFA---EITEKYVCQVDRKVLEPILILLQSNDSQIQIAACAALGNL 136
                 89*******9...88888888888888888887888888899*********97 PP

  == domain 2  score: 20.8 bits;  conditional E-value: 3.4e-07
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +++ aA++aLG+la+++ + l  +    l +L++ ++ d+ eV+++A+g+++nl
  CCD24441.1 124 QIQIAACAALGNLAVNNENKLLIVEMGGLNPLINQMMGDNVEVQCNAVGCITNL 177
                 6799***********************************************997 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.85
     HEAT_EZ  33 LlalLnddsdeVRaaAagaL 52 
                 L +l ++++ +V+ +A gaL
  CCD24441.1 196 LTKLAKSKHMRVQRNATGAL 215
                 7789999999**99999998 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.00022
     HEAT_EZ  16 ggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++++el++     ++p L++lL++ +++V++++  aL+n+
  CCD24441.1 223 ENRKELVN---AGAVPILVSLLSSTDPDVQYYCTTALSNI 259
                 55555555...6789***********************97 PP

  == domain 5  score: 17.4 bits;  conditional E-value: 3.8e-06
     HEAT_EZ  16 ggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +++++ l++  p+++  L++l+ + s++V+++A  aL+nl
  CCD24441.1 263 EENRQKLSQTEPRLVTKLVNLMDSTSSRVKCQATLALRNL 302
                 789999********************************97 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 1.9
     HEAT_EZ  30 lpaLlalLnddsdeV 44 
                 lp L++l ++ds + 
  CCD24441.1 318 LPHLVKLIQSDSIPL 332
                 799999999998744 PP

  == domain 7  score: 6.2 bits;  conditional E-value: 0.012
     HEAT_EZ  30 lpaLlalLnddsd.eVRaaAagaLgnl 55 
                 l++L++lL  +++ e+++ A+ +L+nl
  CCD24441.1 359 LKPLVNLLDYKDSeEIQCHAVSTLRNL 385
                 789*****99777699********997 PP

  == domain 8  score: 7.6 bits;  conditional E-value: 0.0045
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgnl 55 
                 +il+aL+++  + ++eV ++Aa aL+nl
  CCD24441.1 441 DILDALIPMTYSANQEVSGNAAAALANL 468
                 89***********************997 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.15   1.8e+02      20      60 ..      52     100 ..      45     106 .. 0.69
   2 !   11.1   0.2   0.00033      0.39      10      60 ..      81     138 ..      73     147 .. 0.76
   3 !   11.6   0.0   0.00023      0.28       2      58 ..     153     218 ..     152     231 .. 0.82
   4 !   19.6   0.0   7.6e-07   0.00091      29      88 .]     230     300 ..     222     300 .. 0.81
   5 !    9.4   0.0    0.0011       1.3      29      78 ..     273     332 ..     267     343 .. 0.73
   6 ?    3.2   0.0       0.1   1.2e+02      27      59 ..     353     386 ..     318     396 .. 0.56
   7 ?    5.6   0.0     0.017        20      20      59 ..     425     469 ..     418     491 .. 0.76
   8 ?   -3.0   0.0       8.5     1e+04      32      46 ..     508     522 ..     505     524 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.15
      HEAT_2  20 airaLgrignp........ealpaLvellededpavRraaaeaLgaigd 60 
                 +   Lg + n+          l+aL+ l+ +++ + +r aa a ++i +
  CCD24441.1  52 VTALLGYLENKdnldfysgGPLKALTTLVYSDNLNLQRSAALAFAEITE 100
                 44455544444333444445699******9***********99998865 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00033
      HEAT_2  10 ndpdpevrraairaLgrignp.......ealpaLvellededpavRraaaeaLgaigd 60 
                  + + +++r a+ a ++i ++       ++l+ ++ ll++ d+ ++ aa+ aLg ++ 
  CCD24441.1  81 YSDNLNLQRSAALAFAEITEKyvcqvdrKVLEPILILLQSNDSQIQIAACAALGNLAV 138
                 577778888888888877666556566699************************8864 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 0.00023
      HEAT_2   2 daLlqalendpdpevrraairaLg..........rignpealpaLvellededpavRraaaeaLgai 58 
                 ++L++++    + ev+ +a+ ++           +i++  al  L++l+++++++v+r+a  aL  +
  CCD24441.1 153 NPLINQM-MGDNVEVQCNAVGCITnlatrddnksKIATSGALIPLTKLAKSKHMRVQRNATGALLNM 218
                 7888888.68899***********66666666655666699*******************9999655 PP

  == domain 4  score: 19.6 bits;  conditional E-value: 7.6e-07
      HEAT_2  29 npealpaLvellededpavRraaaeaLgaig............dpealpaLkellddddddvvReaAaeaLa 88 
                 n  a+p+Lv+ll+++dp+v++   +aL+ i+            +p+ +  L  l+d+ ++++v+ +A+ aL+
  CCD24441.1 230 NAGAVPILVSLLSSTDPDVQYYCTTALSNIAvdeenrqklsqtEPRLVTKLVNLMDS-TSSRVKCQATLALR 300
                 5679************************995444444555554699*******9976.56777999999985 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.0011
      HEAT_2  29 npealpaLvellededpavRraaaeaLgaig..........dpealpaLkellddddddv 78 
                 +p+++  Lv+l+++++++v  +a  aL  ++          +   lp+L +l ++d+ ++
  CCD24441.1 273 EPRLVTKLVNLMDSTSSRVKCQATLALRNLAsdtsyqleivRAGGLPHLVKLIQSDSIPL 332
                 5789999********************988722222222223446888888888887665 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.1
      HEAT_2  27 ignpealpaLvelleded.pavRraaaeaLgaig 59 
                 i +   l+ Lv+ll+ +d ++++ +a+ +L  ++
  CCD24441.1 353 IVDAGFLKPLVNLLDYKDsEEIQCHAVSTLRNLA 386
                 3344558888899965443789988888887665 PP

  == domain 7  score: 5.6 bits;  conditional E-value: 0.017
      HEAT_2  20 airaLg.....rignpealpaLvellededpavRraaaeaLgaig 59 
                 ai aL+     ++ + ++l+aL+++  +++ +v  +aa aL+ + 
  CCD24441.1 425 AILALAdvsklDLLDMDILDALIPMTYSANQEVSGNAAAALANLC 469
                 777777665555567799***********************9875 PP

  == domain 8  score: -3.0 bits;  conditional E-value: 8.5
      HEAT_2  32 alpaLvellededpa 46 
                 al+++++lle++++ 
  CCD24441.1 508 ALWTILQLLESHNEK 522
                 678999999999986 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   2.3   5.6e-11   6.7e-08     118     298 ..      75     263 ..      73     273 .. 0.82
   2 !   16.5   3.0     2e-06    0.0024     113     301 ..     274     522 ..     268     534 .. 0.71

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 5.6e-11
                 HHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC.....HHHHHHHCCHHHHHHCS-HHHHHH CS
   Adaptin_N 118 aikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleeikkndrlll.....kllpklvrrLcnllteldpwlqvk 211
                 a+++l+ +++  ++++Aala++ + +k+  ++ ++++e i  ll+++d  ++ aA a+l  +  n+++ l       l+ l++++       +   q+ 
  CCD24441.1  75 ALTTLVYSDNLNLQRSAALAFAEITEKYVCQVDRKVLEPILILLQSNDSQIQIAACAALGNLAVNNENKLlivemGGLNPLINQMM----GDNVEVQCN 169
                 67888999999*********************8889**************************444444111244422333333333....345568*** PP

                 HHHHHCC---SSHHHH....HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST.....HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHX CS
   Adaptin_N 212 iiklltrlarqepeersk..kellesllnllqssnnaVlletvnlivelapkne.....livlavnaLvrllsskdenlryvaLrtllkivkke 298
                  + ++t+la +++ +++   +  l  l++l +s+++ V  ++  ++ ++  + e     ++  av +Lv+llss d+ ++y   ++l+ i+  e
  CCD24441.1 170 AVGCITNLATRDDNKSKIatSGALIPLTKLAKSKHMRVQRNATGALLNMTHSGEnrkelVNAGAVPILVSLLSSTDPDVQYYCTTALSNIAVDE 263
                 ************9999559999999*****************999998777777667777777999****************999999998665 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 2e-06
                 HHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.H..HHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC......HHHHHHHCCHHHHHH CS
   Adaptin_N 113 edlapaikkllkdrspyvrkkAalailklykkdpdllrkq.l..veeikellsdkdpgvvlaAvalleeikkndrlll......kllpklvrrLcnllt 202
                 + l++++ +l+ ++s+ v+ +A la+  l + ++ +l+      ++++++l++++++ ++la va +  i   + l+         l+ lv+ L+    
  CCD24441.1 274 PRLVTKLVNLMDSTSSRVKCQATLALRNLASDTSYQLEIVrAggLPHLVKLIQSDSIPLILASVACIRNI-SIHPLNEglivdaGFLKPLVNLLD---Y 368
                 6789999************************97766654333349*************************.444444433234455555555555...6 PP

                 CS-HHHHHHHHHHHCC---SSHHHH..............................................HHHHHHHCGGCGCSSCHHHHHHHHHCCH CS
   Adaptin_N 203 eldpwlqvkiiklltrlarqepeer.......................................sk.....kellesllnllqssnnaVlletvnlive 257
                   ++ +q+  +++l++la++ ++ r                                       sk      ++l+ l +  +s+n+ V  +++ ++ +
  CCD24441.1 369 KDSEEIQCHAVSTLRNLAASSEKNRkeffesgavekckelalvspisvqseisacfailaladvSKldlldMDILDALIPMTYSANQEVSGNAAAALAN 467
                 777889**************9999988888888888888888888888888888888888887633422333455555555558888888777777776 PP

                 CCCCST...........HHHCCHHCHHHHHHSSCCTCHHHHHCHHHHHHHHXXTT CS
   Adaptin_N 258 lapkne...........livlavnaLvrllsskdenlryvaLrtllkivkkepka 301
                 l ++ +           +   +   L r+l+s       +aL t+l++++++ ++
  CCD24441.1 468 LCSRINnynkiiefwnkPSNGIRGFLLRFLDSDYATFEHIALWTILQLLESHNEK 522
                 6666663444555555443444445667777666667777777777777766444 PP

>> KAP  Kinesin-associated protein (KAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.5    0.0087        10     419     461 ..     116     158 ..     108     161 .. 0.88
   2 !   34.2   0.3   6.6e-12   7.9e-09     296     519 ..     156     386 ..     154     388 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0087
         KAP 419 allesldekvdlelialcinlalnkrnaqlivegnglkllmkr 461
                 +ll+s+d ++++   a   nla+n++n  live  gl+ l+++
  CCD24441.1 116 ILLQSNDSQIQIAACAALGNLAVNNENKLLIVEMGGLNPLINQ 158
                 57889999****9999999***************999998875 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 6.6e-12
         KAP 296 vkaldrdniellilvvsflkklsivvenkdemaeldiveklaklvqsehedllnitlklllnlsfdtglrrkmikvgllpklvalla..ddkhklialk 392
                 +  +  dn+e+    v  +  l+   +nk ++a    +  l+kl +s+h  + + +   lln++  ++ r+ ++++g +p lv ll+  d + +  + +
  CCD24441.1 156 INQMMGDNVEVQCNAVGCITNLATRDDNKSKIATSGALIPLTKLAKSKHMRVQRNATGALLNMTHSGENRKELVNAGAVPILVSLLSstDPDVQYYCTT 254
                 666778999999999999*********************************999999999*************************97224456777888 PP

         KAP 393 vlyhvslddkvksmftytdc..iqmlmkallesldekvdlelialcinlalnkrnaqlivegnglkllmkralkfkdalll...kllrnlsqhdgslkl 486
                  l  +++d+  +  +++t+   + +l   l++s++ +v+ +      nla +      iv   gl  l+k       +l+l     +rn+s h    + 
  CCD24441.1 255 ALSNIAVDEENRQKLSQTEPrlVTKL-VNLMDSTSSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLVKLIQSDSIPLILasvACIRNISIHP-LNEG 351
                 99***************995213333.346788999999998777789999998888899999******998888889987322479******8.4455 PP

         KAP 487 qfid..yvgdlarilkesddeelvveclgilanla 519
                 +++d  ++  l ++l  +d ee+   ++ +l nla
  CCD24441.1 352 LIVDagFLKPLVNLLDYKDSEEIQCHAVSTLRNLA 386
                 55554589999999*****************9998 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.83   9.9e+02      11      30 ..      82     101 ..      73     102 .. 0.70
   2 !   11.5   0.2   0.00024      0.28       2      28 ..     111     137 ..     110     139 .. 0.93
   3 ?    4.7   0.0     0.037        44       3      28 ..     153     178 ..     152     180 .. 0.82
   4 ?    2.5   0.0      0.19   2.3e+02       5      27 ..     196     218 ..     193     220 .. 0.85
   5 !   12.4   0.0   0.00012      0.14       2      28 ..     234     260 ..     233     261 .. 0.96
   6 !    8.6   0.1     0.002       2.4       4      29 ..     279     304 ..     276     306 .. 0.88
   7 ?    2.3   0.0      0.23   2.7e+02       2      27 ..     318     343 ..     318     346 .. 0.85
   8 ?    0.5   0.0      0.85     1e+03       2      29 ..     359     387 ..     358     389 .. 0.76
   9 ?    5.5   0.1      0.02        24       1      29 [.     442     470 ..     442     472 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.83
                 -SSHHHHHHHHHHHHHHHHC CS
        HEAT  11 DpspeVReaAakaLgalaev 30 
                 +++ +  ++Aa+a++++ e+
  CCD24441.1  82 SDNLNLQRSAALAFAEITEK 101
                 55666678899999999875 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00024
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 l ++l ll+++++++  aA+ aLg+la
  CCD24441.1 111 LEPILILLQSNDSQIQIAACAALGNLA 137
                 7889999******************98 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.037
                 HHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgala 28 
                 ++l++ ++ ++ eV ++A+ ++++la
  CCD24441.1 153 NPLINQMMGDNVEVQCNAVGCITNLA 178
                 5566667788999***********98 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.19
                 HHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgal 27 
                 l kl ++++++V ++A  aL ++
  CCD24441.1 196 LTKLAKSKHMRVQRNATGALLNM 218
                 58999***********9999765 PP

  == domain 5  score: 12.4 bits;  conditional E-value: 0.00012
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 +P+l++lls+++p+V + +  aL ++a
  CCD24441.1 234 VPILVSLLSSTDPDVQYYCTTALSNIA 260
                 79**********************997 PP

  == domain 6  score: 8.6 bits;  conditional E-value: 0.002
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                  l++l+ ++s++V + A +aL +la+
  CCD24441.1 279 KLVNLMDSTSSRVKCQATLALRNLAS 304
                 58899999****************97 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.23
                 HHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgal 27 
                 lP+l+kl++++s     a++ ++ ++
  CCD24441.1 318 LPHLVKLIQSDSIPLILASVACIRNI 343
                 8*******999888889999998887 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.85
                 HHHHHHHHT-.SSHHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsD.pspeVReaAakaLgalae 29 
                 l +l++ll   +s e+ + A+ +L +la 
  CCD24441.1 359 LKPLVNLLDYkDSEEIQCHAVSTLRNLAA 387
                 6678888866455559********99985 PP

  == domain 9  score: 5.5 bits;  conditional E-value: 0.02
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 +l++l+ +  + + eV  +Aa aL++l++
  CCD24441.1 442 ILDALIPMTYSANQEVSGNAAAALANLCS 470
                 78899999999*****************8 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   3.9   1.2e-07   0.00015      12     173 ..     109     271 ..      99     273 .. 0.84
   2 !    7.5   0.3     0.002       2.4      21      97 ..     199     275 ..     192     313 .. 0.72
   3 !   12.1   0.1   8.4e-05       0.1      13      90 ..     317     394 ..     306     420 .. 0.81
   4 ?   -1.2   0.0      0.94   1.1e+03      65      96 ..     452     483 ..     438     492 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.2e-07
       Arm_2  12 kelekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnqvckdivssplNse 110
                 k le +l lL +s+d+ iq +a  +lgn a+   n+ +i ++gg+  + n +   n ev+ +a+  + nl++ ++n++ki +    +    ++ +    
  CCD24441.1 109 KVLEPILILL-QSNDSQIQIAACAALGNLAVNNENKLLIVEMGGLNPLINQMMGDNVEVQCNAVGCITNLATRDDNKSKIATSGALIPLTKLAKSKHMR 206
                 5566666666.589******************************976666666779************************9987777666677777889 PP

       Arm_2 111 vQlagLklltnlsvtneyqhll..vsyisellsLLskGnekikvqvLkvllnlseNpamtrells 173
                 vQ  +   l n++   e +  l  +  ++ l+sLLs+ +  ++ +    l+n++  +++ ++l +
  CCD24441.1 207 VQRNATGALLNMTHSGENRKELvnAGAVPILVSLLSSTDPDVQYYCTTALSNIAVDEENRQKLSQ 271
                 ************9876655444014589**************************99999998865 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.002
       Arm_2  21 Lkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsksnaevkekalnalnnlsenvenqkkikvyvnq 97 
                 L +s+   +q+ a+ +l n      n++ + + g ++i+ +lls++++ v+    +al n ++ +en +k+    ++
  CCD24441.1 199 LAKSKHMRVQRNATGALLNMTHSGENRKELVNAGAVPILVSLLSSTDPDVQYYCTTALSNIAVDEENRQKLSQTEPR 275
                 56666666777777777777766777777778899999999999999999999999999999999988887655444 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 8.4e-05
       Arm_2  13 elekllalLkssedpliqeialltlgnsaaysvnqdiirdlggitiianllsks.naevkekalnalnnlsenvenqkk 90 
                  l +l++l++s + pli   +  +  n   +++n+ +i d g +  + nll  + ++e++ +a+++l nl+ ++e+++k
  CCD24441.1 317 GLPHLVKLIQSDSIPLILASVACI-RNISIHPLNEGLIVDAGFLKPLVNLLDYKdSEEIQCHAVSTLRNLAASSEKNRK 394
                 67899************9998865.56679**************9999999865167899**********998887655 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 0.94
       Arm_2  65 ksnaevkekalnalnnlsenvenqkkikvyvn 96 
                 + n+ev+ +a  al nl +  +n++ki  + n
  CCD24441.1 452 SANQEVSGNAAAALANLCSRINNYNKIIEFWN 483
                 578999999**************999876655 PP

>> V-ATPase_H_N  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   1.0   4.8e-07   0.00057      90     272 ..      95     307 ..      75     329 .. 0.78
   2 !   11.3   0.4   0.00013      0.15     105     279 ..     233     397 ..     207     420 .. 0.81
   3 ?    2.5   0.2     0.061        72      20     143 ..     368     527 ..     359     537 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 4.8e-07
  V-ATPase_H_N  90 rvelflslakkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllql.Lssqlss......................... 160
                   ++e+ +++  + ++++++p+l ll+++d++i+  a+  l +l+v +++k   ++   Ln l++  + ++ +                          
    CCD24441.1  95 FAEITEKYVCQVDRKVLEPILILLQSNDSQIQIAACAALGNLAVNNENKLLIVEMGGLNPLINQmMGDNVEVqcnavgcitnlatrddnkskiatsg 191
                   455666666677888******************************9999998775666444433144433334555777777888888888888888 PP

  V-ATPase_H_N 161 ...........stnevieiavrllqellrtkeyRelfveadgvstlisilrstvanstrvgiQlqYqvllclWlLsFekkiaeelvkkk.elipllv 245
                              +   v+  a+ +l ++ ++ e R+ +v+a  v++l+s+l       ++++ ++qY+    l  ++ +++  ++l++++ +l+ +lv
    CCD24441.1 192 alipltklaksKHMRVQRNATGALLNMTHSGENRKELVNAGAVPILVSLL-------SSTDPDVQYYCTTALSNIAVDEENRQKLSQTEpRLVTKLV 281
                   8888888877766777799*******************************.......8999************************************ PP

  V-ATPase_H_N 246 dilrdsv.KEKvtRvilatlrNllekae 272
                   +++ ++  + K+   +   lrNl +   
    CCD24441.1 282 NLMDSTSsRVKCQ--ATLALRNLASDTS 307
                   **96543388886..6667777776665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00013
  V-ATPase_H_N 105 pwkpflkllnrqddfivllalrllakllvqgkkksnklvesaLnrllqlLssqlssstnevieiavrllqellrtkeyRelfveadgvstlisilrs 201
                    + +++ ll+++d  ++  + + l +++v ++++++   ++  +rl++ L ++++s ++ v   a+ +l +l++  +y   +v a g++ l++++  
    CCD24441.1 233 AVPILVSLLSSTDPDVQYYCTTALSNIAVDEENRQKL--SQTEPRLVTKLVNLMDSTSSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLVKLI-- 325
                   4455666999999999999999999999999998888..66678999999998888888888889999999999999999999999999999999.. PP

  V-ATPase_H_N 202 tvanstrvgiQlqYqvllclWlLsFekkiaeelvkkkelipllvdilrdsvKEKvtRvilatlrNllekaeksskela 279
                        ++ +i l+  ++ c+  +s  +   + +v+   +++ lv++l     E +   +++tlrNl ++ ek++ke+ 
    CCD24441.1 326 -----QSDSIPLILASVACIRNISIHPLNEGLIVDAG-FLKPLVNLLDYKDSEEIQCHAVSTLRNLAASSEKNRKEFF 397
                   .....55678899999999999999998888887777.9999999999999999999999999999999998875554 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.061
  V-ATPase_H_N  20 yvrsqliseedlkliksldkakkeqrakll.dedgpqyvklll..............................nLlskl......skedtlqyiLvl 79 
                   y  s++i+   ++++++l + ++++r++++ +   +++++l+l                              ++l  l       ++++  +    
    CCD24441.1 368 YKDSEEIQCHAVSTLRNLAASSEKNRKEFFeSGAVEKCKELALvspisvqseisacfailaladvskldlldmDILDALipmtysANQEVSGNAAAA 464
                   5566777777777777777777777777775666667777777777777777777776666666666666666344433444476777777777777 PP

  V-ATPase_H_N  80 idDllsedksrvelflslakkeeqdpwkpflkllnrqddfivllalrllakllvqgkkksnklv 143
                   ++ l+s  +++ ++++  +k +++ + + +l++l+++ + + ++al  + +ll  +++k  +lv
    CCD24441.1 465 LANLCSRINNYNKIIEFWNKPSNG-IRGFLLRFLDSDYATFEHIALWTILQLLESHNEKIMNLV 527
                   777777777777777776665554.777777777777777777777777777777777666655 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.3   0.00033      0.39      41     112 ..     108     177 ..      73     181 .. 0.86
   2 ?    3.2   0.0     0.079        94      57     112 ..     202     259 ..     183     263 .. 0.67
   3 !    6.9   0.0    0.0055       6.6      44     112 ..     234     302 ..     222     309 .. 0.68
   4 ?    4.5   0.1      0.03        36      31      65 ..     264     297 ..     262     346 .. 0.73
   5 ?    2.1   0.0      0.17   2.1e+02      46     112 ..     320     385 ..     304     389 .. 0.74
   6 ?    0.8   0.0      0.44   5.2e+02      34     113 ..     433     516 ..     429     520 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00033
  V-ATPase_H_C  41 fkllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                    k+l+ ++ ll +s+d++++  a+  +g+l+ + +e k ++ ++++ + +++ +  ++ ev+ +A  ++ +l
    CCD24441.1 108 RKVLEPILILL-QSNDSQIQIAACAALGNLAVN-NENKLLIVEMGGLNPLINQMMGDNVEVQCNAVGCITNL 177
                   56777777788.69999*9999********988.66677777888888899999999***********9876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.079
  V-ATPase_H_C  57 ktvlavalnDigelvkllp..egkkvleklkaKekimellehedeevkyeALkavqkl 112
                   ++ + v  n  g l+++++  e +k l + +a   +++ll+++d++v+y   +a++++
    CCD24441.1 202 SKHMRVQRNATGALLNMTHsgENRKELVNAGAVPILVSLLSSTDPDVQYYCTTALSNI 259
                   4455566666666665555113444455667788999************998888776 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0055
  V-ATPase_H_C  44 lkkLiklleeskdktvlavalnDigelvkllpegkkvl.eklkaKekimellehedeevkyeALkavqkl 112
                   +  L++ll +s+d+ v+  +   +++++   ++ +k+  ++ +  +k+++l++++ ++vk +A +a+ +l
    CCD24441.1 234 VPILVSLL-SSTDPDVQYYCTTALSNIAVDEENRQKLSqTEPRLVTKLVNLMDSTSSRVKCQATLALRNL 302
                   55678888.5788876666666666665554444444423334478889999999999999998888766 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.03
  V-ATPase_H_C  31 enaekleeknfkllkkLiklleeskdktvlavaln 65 
                   en +kl + + +l+ kL++l++ s++++v + a  
    CCD24441.1 264 ENRQKLSQTEPRLVTKLVNLMD-STSSRVKCQATL 297
                   7888888888889999999884.444444433333 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.17
  V-ATPase_H_C  46 kLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehe.deevkyeALkavqkl 112
                   +L+kl+  ++d+  l +a     + ++ +p  + ++ + +  + +++ll+ +  ee++ +A  ++ +l
    CCD24441.1 320 HLVKLI--QSDSIPLILASVACIRNISIHPLNEGLIVDAGFLKPLVNLLDYKdSEEIQCHAVSTLRNL 385
                   677777..355555566666667778888989999988888888888888662568999999998765 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.44
  V-ATPase_H_C  34 ekleeknfkllkkLiklleeskd..ktvlavalnDigelvkllpegkkvleklka..KekimellehedeevkyeALkavqkll 113
                   +kl+  ++++l +Li + ++ ++  + + a al ++ + ++++++  ++++k ++  +  ++++l+++ ++ +  AL ++ +ll
    CCD24441.1 433 SKLDLLDMDILDALIPMTYSANQevSGNAAAALANLCSRINNYNKIIEFWNKPSNgiRGFLLRFLDSDYATFEHIALWTILQLL 516
                   566666778888888888544442346678888888888888888888887644333888888888888888888888877766 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   1.1    0.0035       4.2      34     105 ..      84     156 ..      73     188 .. 0.72
   2 !    9.4   0.2   0.00083      0.99      25     129 ..     154     262 ..     151     269 .. 0.65
   3 !   11.9   0.2   0.00015      0.18      24     114 ..     194     290 ..     189     314 .. 0.81
   4 ?    2.0   0.0      0.15   1.8e+02      45      92 ..     340     392 ..     334     408 .. 0.78
   5 ?    5.5   0.2     0.014        16      55     106 ..     438     487 ..     414     541 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0035
        Cnd1  34 dpyVRktaaivvakLilndmvkekg.flselaklleDenprVvanalaalteiseksenaiynllpdiiskls 105
                 +   ++ aa+++a++ ++ ++++   +l+ ++ ll+ ++++++  a aal +++ ++en+++ +    ++ l 
  CCD24441.1  84 NLNLQRSAALAFAEITEKYVCQVDRkVLEPILILLQSNDSQIQIAACAALGNLAVNNENKLLIVEMGGLNPLI 156
                 5667789999999999999999888799999999999999999999999999999987777655555454444 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00083
        Cnd1  25 pLrkrLkDedpyVRktaaivvakL....ilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqiti 119
                 pL +++  ++  V+ +a+ ++++L     ++  +  +g l  l kl + ++ rV+ na  al ++ + +en    ++   +  l++ l + + + q + 
  CCD24441.1 154 PLINQMMGDNVEVQCNAVGCITNLatrdDNKSKIATSGALIPLTKLAKSKHMRVQRNATGALLNMTHSGENRKELVNAGAVPILVSLLSSTDPDVQYYC 252
                 666667777888888888888888533323336778888888888888888888888888888888886655555555555555555555666666666 PP

        Cnd1 120 lefLlsyipk 129
                  ++L++   +
  CCD24441.1 253 TTALSNIAVD 262
                 6666554444 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00015
        Cnd1  24 epLrkrLkDedpyVRktaaivvakL....ilndmvkekgflselaklleDenprVvanalaalteisek..senaiynllpdiisklsdalnecsew 114
                  pL+k  k +++ V+++a  +++++     +++   + g +  l +ll+ ++p V+  + +al++i+    + +++ +  p ++ kl++ +++ s  
  CCD24441.1 194 IPLTKLAKSKHMRVQRNATGALLNMthsgENRKELVNAGAVPILVSLLSSTDPDVQYYCTTALSNIAVDeeNRQKLSQTEPRLVTKLVNLMDSTSSR 290
                 68999999999**************86654555677899****************************995455789999999999999866555444 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.15
        Cnd1  45 vakL....ilndmvkekgflselakll.eDenprVvanalaalteiseksena 92 
                 + ++    ++++++ + gfl+ l +ll   ++++++  a++ l +++  se++
  CCD24441.1 340 IRNIsihpLNEGLIVDAGFLKPLVNLLdYKDSEEIQCHAVSTLRNLAASSEKN 392
                 5555556688999**************54455889999999999999886554 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.014
        Cnd1  55 kekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsd 106
                  + ++l+ l  +    n++V+ na aal ++ ++   + yn  ++  +k s+
  CCD24441.1 438 LDMDILDALIPMTYSANQEVSGNAAAALANLCSRI--NNYNKIIEFWNKPSN 487
                 4667899999999999***************9996..346666666666555 PP

>> Tti2  Tti2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.24   2.9e+02     127     158 ..     113     144 ..     110     160 .. 0.80
   2 !   14.1   0.0   2.2e-05     0.026     102     165 ..     254     318 ..     225     325 .. 0.85
   3 ?    1.8   0.0      0.12   1.4e+02     127     158 ..     361     393 ..     358     403 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.24
        Tti2 127 piLnllDdtdtsvKlrGlklLqtlleklessk 158
                 piL ll ++d ++ + ++  L +l  + e++ 
  CCD24441.1 113 PILILLQSNDSQIQIAACAALGNLAVNNENKL 144
                 8*********************9988777764 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.2e-05
        Tti2 102 isvlawiirqlqskeieanwplivPpiLnllDdtdtsvKlrGlklLqtlleklessk.llkrtGL 165
                 +++ ++++++  ++++++  p++v  ++nl+D+t+ +vK ++   L++l + ++ +  +++  GL
  CCD24441.1 254 TALSNIAVDEENRQKLSQTEPRLVTKLVNLMDSTSSRVKCQATLALRNLASDTSYQLeIVRAGGL 318
                 4455778888889999*********************************9988766555555555 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.12
        Tti2 127 piLnllDdtd.tsvKlrGlklLqtlleklessk 158
                 p++nllD +d +++  ++++ L++l ++ e+++
  CCD24441.1 361 PLVNLLDYKDsEEIQCHAVSTLRNLAASSEKNR 393
                 89*******99*************998887765 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00083      0.99      18      64 ..     100     146 ..      88     178 .. 0.76
   2 !    7.9   0.0    0.0038       4.6      27      89 ..     232     296 ..     208     305 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00083
  Vac14_Fab1_bd  18 ekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlk 64 
                    ek + ++ +++++p+l  ++ +ds++   ac +l n+a   ++++l 
     CCD24441.1 100 EKYVCQVDRKVLEPILILLQSNDSQIQIAACAALGNLAVNNENKLLI 146
                    4557788899**************************99887777664 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0038
  Vac14_Fab1_bd  27 eivkpvlkcfsDkdsrvRyyacEslynia..kvakgevlkllneifdalvklvaDsdesvksgae 89 
                      v+++++ +s +d  v yy + +l nia     ++++ ++  ++ + lv+l+  + + vk  a 
     CCD24441.1 232 GAVPILVSLLSSTDPDVQYYCTTALSNIAvdEENRQKLSQTEPRLVTKLVNLMDSTSSRVKCQAT 296
                    4678889999999**************98223445555566667777777777777777776655 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   4.4e-05     0.053      52     135 ..     108     188 ..      65     207 .. 0.76
   2 ?    3.8   0.0     0.042        50      67     137 ..     203     270 ..     192     276 .. 0.79
   3 ?    4.0   0.0     0.037        45      99     143 ..     359     403 ..     332     414 .. 0.74
   4 ?   -2.1   0.1       2.8   3.4e+03      78     127 ..     442     471 ..     420     480 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.4e-05
     DUF3361  52 deFikkiasivnksaadasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllkaddskrke 135
                  + ++ i   ++++  d++i+ ++ a L ++++n++++  +ve    l+ Li+ +  +n e+q+na+  ++ L ++ d++ + +
  CCD24441.1 108 RKVLEPILILLQSN--DSQIQIAACAALGNLAVNNENKLLIVEMG-GLNPLINQMMGDNVEVQCNAVGCITNLATRDDNKSKIA 188
                 55555566666666..9*******************999888765.6999**********************999877665544 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.042
     DUF3361  67 adasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllkaddskrkela 137
                 +  +++++++  L ++ ++ ++  elv+    ++ L++ L+s+++ +q ++ + l  +   +d+++r++l+
  CCD24441.1 203 KHMRVQRNATGALLNMTHSGENRKELVNAG-AVPILVSLLSSTDPDVQYYCTTALSNI--AVDEENRQKLS 270
                 5688999************99888888765.6899************99987655544..34555666665 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.037
     DUF3361  99 lesLiehLqssnqe.iqtnalaLlnALllkaddskrkelaetlskk 143
                 l+ L++ L+ +++e iq++a++ l  L + ++ ++rke+ e+ + +
  CCD24441.1 359 LKPLVNLLDYKDSEeIQCHAVSTLRNLAASSE-KNRKEFFESGAVE 403
                 677899997766666*********99988776.7777777665555 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 2.8
     DUF3361  78 iLesivlnsselyelvekevtlesLiehLqssnqeiqtnalaLlnALllk 127
                 iL                    + Li +  s+nqe++ na a l  L+ +
  CCD24441.1 442 IL--------------------DALIPMTYSANQEVSGNAAAALANLCSR 471
                 44....................4455555555555555555555444443 PP

>> RasGEF_N_2  Rapamycin-insensitive companion of mTOR RasGEF_N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.4   1.7e+03       7      45 ..     111     149 ..     105     167 .. 0.73
   2 ?    0.1   0.0      0.86     1e+03       7      42 ..     152     187 ..     151     218 .. 0.77
   3 ?    4.0   0.1     0.053        64       7      50 ..     234     287 ..     229     311 .. 0.77
   4 ?    1.5   0.0      0.33   3.9e+02       7      43 ..     359     397 ..     358     424 .. 0.81
   5 ?    4.9   0.0     0.027        33       9      49 ..     445     485 ..     442     519 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.4
  RasGEF_N_2   7 iellvnqLydqsrevvaaaleiLeeacddkeslevlvel 45 
                 +e ++  L+  +++++ aa  +L +   ++e+   +ve+
  CCD24441.1 111 LEPILILLQSNDSQIQIAACAALGNLAVNNENKLLIVEM 149
                 566677789999999999999999998888777777764 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.86
  RasGEF_N_2   7 iellvnqLydqsrevvaaaleiLeeacddkeslevl 42 
                 ++ l+nq+  ++ ev+  a+ ++ +  + +++  ++
  CCD24441.1 152 LNPLINQMMGDNVEVQCNAVGCITNLATRDDNKSKI 187
                 6789****************9999996555444443 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.053
  RasGEF_N_2   7 iellvnqLydqsrevvaaaleiLeeacddkeslevlvelkpsl..........q 50 
                 +++lv  L+  +++v+     +L ++  d+e+ ++l +++p+l           
  CCD24441.1 234 VPILVSLLSSTDPDVQYYCTTALSNIAVDEENRQKLSQTEPRLvtklvnlmdsT 287
                 7899*************************************9976665555440 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.33
  RasGEF_N_2   7 iellvnqL.ydqsrevvaaaleiLeeacddk.eslevlv 43 
                 ++ lvn L y++s+e++ +a++ L +   +  ++ ++++
  CCD24441.1 359 LKPLVNLLdYKDSEEIQCHAVSTLRNLAASSeKNRKEFF 397
                 5789999999**************999555536666555 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.027
  RasGEF_N_2   9 llvnqLydqsrevvaaaleiLeeacddkeslevlvelkpsl 49 
                  l+   y  ++ev+  a+ +L + c+  ++ ++++e++++ 
  CCD24441.1 445 ALIPMTYSANQEVSGNAAAALANLCSRINNYNKIIEFWNKP 485
                 56777899****************************98765 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.25     3e+02      50     123 ..     106     179 ..      94     255 .. 0.68
   2 ?    6.3   0.1    0.0054       6.4      87     131 ..     267     312 ..     252     316 .. 0.84
   3 ?    2.4   0.1     0.084     1e+02      85     133 ..     432     480 ..     409     528 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.25
     CLASP_N  50 clkqlleailkalssLrttlsstgchllkelaiqlkeqldpm.veillptLlkllgdtKkiisqnanqalaalls 123
                 + +++le il  l+s  +++  ++c  l +la  ++++l  + +  l p++ +++gd+ ++   na  +++ l +
  CCD24441.1 106 VDRKVLEPILILLQSNDSQIQIAACAALGNLAVNNENKLLIVeMGGLNPLINQMMGDNVEV-QCNAVGCITNLAT 179
                 5577888999999999999999999999999999999965554777888888888887775.4556666666554 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0054
     CLASP_N  87 q.ldpmveillptLlkllgdtKkiisqnanqalaallsnasfspri 131
                 q l +   +l++ L++l+ +t  ++  +a+ al  l s++s++ +i
  CCD24441.1 267 QkLSQTEPRLVTKLVNLMDSTSSRVKCQATLALRNLASDTSYQLEI 312
                 34777778999******************************98776 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.084
     CLASP_N  85 keqldpmveillptLlkllgdtKkiisqnanqalaallsnasfsprilq 133
                  ++ld +   +l+ L+ +  +  + +s na++ala l+s ++  ++i+ 
  CCD24441.1 432 VSKLDLLDMDILDALIPMTYSANQEVSGNAAAALANLCSRINNYNKIIE 480
                 5567777677899999*************************97777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       725  (0.0404373); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.55
# Mc/sec: 3328.36
//
Query:       CCD24442.1  [L=580]
Description: hypothetical protein NDAI_0D01280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-16   59.2   0.0      9e-16   58.2   0.0    1.5  1  YjeF_N    YjeF-related protein N-terminus
    2.5e-06   28.3  12.0    2.5e-06   28.3  12.0    4.0  4  FDF       FDF domain


Domain annotation for each model (and alignments):
>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.0     1e-19     9e-16       2     167 ..     300     523 ..     299     526 .. 0.83

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1e-19
      YjeF_N   2 eeLmenagravaevlrallg...............nspaekkvlvlvGs.gnnGgdglaaArhLaqe.gakVtv.........llleeeekldedaera 74 
                 ++L+en + + + +l+++l                n+++++  ++++++ g++G +++ +A +L q  +++V++            +++++  +++ ++
  CCD24442.1 300 DSLAENFAINSSYFLKDKLLdksknkndknfkndkNNDKNPLAVIIASDvGRSGLKAISLAKYLVQSnKIDVILlfvqssfsnNADNNNSNKMREISEN 398
                 6799*********999999999************97777777777777647*************6550555888776755332222334466778999* PP

      YjeF_N  75 lellkkaggkvveekpeedleekls................apvdlviDAllGi......glrgelreelaeliewlnss........eapvlavDiPS 143
                 l++++k+ggk++  ++++++e                     + +lviD+l+G+       +++ l+ el e+++w+n +        +   +++D PS
  CCD24442.1 399 LKIFEKCGGKLIIRNNDKNKEGVNRkniieslkaifqtlnnPSIELVIDGLQGFdcdlldDFDTGLEYELIEILTWCNYQknnknnnsNCELWSIDFPS 497
                 ************999999887666699************98889****************9*****************9999****98888******** PP

      YjeF_N 144 GldadtGavs.gtavk.advtvtfga 167
                 G++++tG+ + +++++  d +++  +
  CCD24442.1 498 GYESSTGMKNfENCINhVDGILCSNW 523
                 *******9885455543666666666 PP

>> FDF  FDF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   2.5     0.069   6.2e+02      33      71 ..      63     103 ..      45     107 .. 0.63
   2 !   28.3  12.0   2.8e-10   2.5e-06       1      65 [.     108     169 ..     108     183 .. 0.77
   3 ?   -2.5   2.5       1.1   9.4e+03      35      53 ..     207     228 ..     195     276 .. 0.43
   4 ?   -1.4   0.1      0.51   4.6e+03      28      41 ..     321     334 ..     306     347 .. 0.48

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.069
                 XXXXXXX....XXXXXXXXXXXXXXXXXXXBXXBXXXXXXX CS
         FDF  33 eeklaknen..aatatatneqpgekvegvdkkksffDkiSs 71 
                 ++k+a+++n  a++a+++n+q + ++e+ +  ++++D + +
  CCD24442.1  63 AKKKAVSNNinANNANNNNKQRQISNEIGNGNANEIDWKND 103
                 23333333344777777777777777777777777776655 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 2.8e-10
                 SSSSS---HCCCCCTSSCCHHCCHHHCC-XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXBXXBX CS
         FDF   1 ikfeeDFDFesanakFnkkevfeellkkaklkeeklaknenaatatatneqpgekvegvdkkksf 65 
                 ik++eDFDF+ +++ Fnkk++f++l+++++ ++    +   ++  +++ne + + +e+v++ +++
  CCD24442.1 108 IKQDEDFDFQGNLNLFNKKDIFNQLREYDNNNNITHVV---NKDHYQNNEMIVTGNENVNNDEDE 169
                 79****************************99977777...566666666666666666665543 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.1
                 XXXXX.....XXXXXXXXXXXX CS
         FDF  35 klaknen...aatatatneqpg 53 
                 k+a+++n   +++ + +n + +
  CCD24442.1 207 KDANSHNintNNKDVLQNIENL 228
                 3333333112222222222222 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 0.51
                 C-XXXXXXXXXX.. CS
         FDF  28 kaklkeeklaknen 41 
                 k+k k++k+ kn +
  CCD24442.1 321 KSKNKNDKNFKNDK 334
                 22222222222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1512  (0.0843326); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4199.65
//
Query:       CCD24443.1  [L=392]
Description: hypothetical protein NDAI_0D01290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.4e-29  100.7   0.1    1.6e-28   99.7   0.1    1.6  1  eRF1_2    eRF1 domain 2
    1.4e-23   83.5   0.1    4.1e-23   82.0   0.1    1.8  1  eRF1_3    eRF1 domain 3
    6.2e-21   74.7   0.1    9.7e-21   74.1   0.1    1.3  1  eRF1_1    eRF1 domain 1


Domain annotation for each model (and alignments):
>> eRF1_2  eRF1 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.1   2.6e-32   1.6e-28       2     131 ..     145     275 ..     144     277 .. 0.94

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 2.6e-32
                 EEEEEEETTEEEEEEEESSCEEEEEEEE------BSTTBSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTTESEEEEEESSTHHHHHHHHHHHHH CS
      eRF1_2   2 vglivldegeAtigllkgsrtevlkkievsvPkKhkrGgqsarrfeRlreekleeflkkvaeaankafllvdkdklkgiilagpgfvkeefldkdllda 100
                 ++++vl+eg A+++ll++s+t +++kie+s+PkK++  +++  +f    +ek+ +f+k ++e+++k+   +d+++lk i+l++p+f+++ ++dk+l++a
  CCD24443.1 145 TAAVVLQEGIAHVCLLTPSSTILKQKIEYSMPKKKR--STDVMKF----DEKTTKFYKAIYESIKKN---FDISNLKLILLCSPAFYAKTLYDKILQYA 234
                 79*********************************9..5999999....6*****************...89**************************9 PP

                 HHHT........CCEEEEE-S-TSCHHHHHHHHC..CHHHH CS
      eRF1_2 101 elkk........kviklvdvsyggesglnevlek..aaevl 131
                 ++++        +++ ++++s+g+ +g++evl++    ++l
  CCD24443.1 235 KEEQnklilsnqNKFLVAHCSTGYLQGISEVLKDplFTSKL 275
                 999999**************************997666666 PP

>> eRF1_3  eRF1 domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.1   6.9e-27   4.1e-23       2     113 .]     281     379 ..     280     379 .. 0.95

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 6.9e-27
                 HHHHHHHHHHHHHHHCTCSSEEESHHHHHHHHHTT-EEEEEEEHCHHTSSSH.HHHHS-HHH-HHHHHHHHHHHHHHHHHTT-EEEEE-TTSHHHHHHH CS
      eRF1_3   2 iqekklleefleelakdtgkavYGveevlkalemgAvetLLvseelersrdt.lkekvketgeelelvelieelvenveesgakveiisseseeGeqlv 99 
                  q++++l++fl++l  d+ ka+YG+ ev ka+emgA++ LL+++ + rs+d  +++k             ++++++ ve++g+kv+++s+ +e+Ge+l 
  CCD24443.1 281 TQDVQILDDFLKHLDADDFKAWYGESEVVKAAEMGAINYLLITDIIMRSSDLvQRKK-------------FQNVADVVEQNGGKVIVFSTLHESGEEL- 365
                 6899*********************************************99956666.............99**************************. PP

                 HHTTTEEEEESS-- CS
      eRF1_3 100 kafgGiaaiLRykv 113
                 ++++G+a+iL+y++
  CCD24443.1 366 DKLTGVACILKYPL 379
                 ************85 PP

>> eRF1_1  eRF1 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1   0.1   1.6e-24   9.7e-21       1     129 []       1     137 [.       1     137 [. 0.93

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 1.6e-24
                 HEEEEECTBTTSCCEEEEEE-SCHHHHHHHHHCHTTHEE...EEEEEECHHH.......--CEEEEEEEEEEEEEEECTTSSEEEEEEEEEEGGGG... CS
      eRF1_1   1 mkllkrdlekdgsgsvtLipeddedlwhlynliapgdsv...rastvrkvqresstgsreservklkLtikvekvdfdkdagvlrisGkvieeneh... 93 
                 m++lk   +  g  s++L+ped+edl+++ +li+++d++   ++ t++  q +++++++++++ + +L+ikv + +f+ ++++l+++G +++++     
  CCD24443.1   1 MRVLKLLKNATGGASISLLPEDKEDLFTIHQLIDKDDEIifkKKFTTKTAQVNEQSSTTKKTTDLARLRIKVLSNEFSLADDYLKYKGVTTTDESGqsn 99 
                 7888887888999**************************99878888888777788888899*****************************99988899 PP

                 ..--TTSEEEEEE-TTSEEEEEECEESHHHHHHHHHHC CS
      eRF1_1  94 ..vklgafhtldlelkrpftiikeewdsfalerLkeal 129
                   +++g+f ++ ++   pftiik+e+d++a + L++a+
  CCD24443.1 100 vdIPVGKFLSFVVNFTYPFTIIKDEFDKYAEKLLNNAC 137
                 99*********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1082  (0.0603492); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3048.62
//
Query:       CCD24444.1  [L=319]
Description: hypothetical protein NDAI_0D01300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     4e-105  351.1   2.8   4.8e-105  350.9   2.8    1.0  1  Septin        Septin
    3.4e-10   40.0   0.2    7.4e-10   38.9   0.2    1.6  1  MMR_HSR1      50S ribosome-binding GTPase
      8e-08   32.4   1.1    4.9e-07   29.8   0.2    2.1  2  RsgA_GTPase   RsgA GTPase
    1.8e-06   27.6   2.4      4e-05   23.2   0.7    2.2  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    2.7e-06   27.5   1.5      0.034   14.2   0.1    2.6  2  Dynamin_N     Dynamin family
    6.8e-06   25.6   0.6    1.7e-05   24.2   0.6    1.8  1  AIG1          AIG1 family
     0.0014   19.0   0.0      0.003   18.0   0.0    1.5  1  AAA_16        AAA ATPase domain
     0.0036   16.5   0.0      0.006   15.8   0.0    1.3  1  NB-ARC        NB-ARC domain
      0.004   17.4   0.1     0.0087   16.3   0.1    1.8  1  AAA_22        AAA domain
     0.0042   16.5   0.0     0.0088   15.4   0.0    1.5  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
     0.0062   16.4   0.3      0.059   13.2   0.0    2.2  2  CLP1_P        mRNA cleavage and polyadenylation factor CLP1 P
  ------ inclusion threshold ------
      0.014   15.5   0.5      0.041   13.9   0.1    2.1  2  AAA_14        AAA domain
      0.015   15.0   0.9      0.031   14.0   0.3    1.9  2  AAA_24        AAA domain
      0.015   15.8   2.7      0.033   14.7   2.7    1.9  1  ABC_tran      ABC transporter
      0.017   14.6   0.1      0.033   13.7   0.1    1.5  1  AAA_7         P-loop containing dynein motor region
      0.021   14.6   0.0      0.048   13.4   0.0    1.6  1  AAA_29        P-loop containing region of AAA domain
      0.024   14.0   1.7       0.41   10.0   1.7    2.2  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
      0.025   14.7   0.0        0.1   12.8   0.0    2.2  3  AAA_33        AAA domain
      0.036   14.3   0.1      0.082   13.1   0.1    1.6  1  Roc           Ras of Complex, Roc, domain of DAPkinase
       0.06   13.1   0.4        1.5    8.5   0.2    2.7  2  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
      0.096   12.2   2.4        1.5    8.4   1.0    2.6  2  FeoB_N        Ferrous iron transport protein B
       0.21   10.6   0.4       0.37    9.7   0.0    1.5  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.9   2.8  5.9e-108  4.8e-105       1     279 [.      31     309 ..      31     311 .. 0.97

  Alignments for each domain:
  == domain 1  score: 350.9 bits;  conditional E-value: 5.9e-108
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------.------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdlieeekleease.kkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylr 98 
                 +g++f++mvvG+sglGk+tlintlf+++li++ + ++ ++  ++kt+e+k +++++ ed+v+ln+++iDtpgfGd+++n+k wepiv+yi+eq++ ylr
  CCD24444.1  31 RGFQFNIMVVGHSGLGKSTLINTLFASHLIDTATGNDITKlPISKTTEMKVSTHSLIEDKVRLNINIIDTPGFGDQINNDKVWEPIVKYIKEQHSIYLR 129
                 69*****************************9777776666********************************************************** PP

                 HCTSS--.SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHHHH CS
      Septin  99 eesklkR.kkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakelse 196
                 +e +++R +++ D+RvHa+lyf++P+++gl +ld++++kkl+e +n+iPviaK+D+lt +E  +f+++i+++++++++kiy  +d e+  dee  el++
  CCD24444.1 130 KELTAQReRHLPDTRVHAILYFLQPNNKGLTKLDIAALKKLTELANVIPVIAKSDALTIDERVNFRSNIQKQFQKYNFKIYP-YDNEDLTDEE-LELNK 226
                 *******88999**********************************************************************.9*****9999.99*** PP

                 HHHHC-SEEB-SSSSEEEESSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XXXXXX CS
      Septin 197 klkeslPfaivgsneliekkgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklsklkeka 279
                 ++++ +Pfa+vgs+++ie +g++ rgRk++WG+++ve+ ++++F+ Lr++l++thl+dL+e+t+ ++Ye++R+++l +lke+a
  CCD24444.1 227 SIRSIIPFAVVGSEKEIEVDGQTFRGRKTRWGAINVEDMNQCEFVYLREFLIRTHLQDLIESTSYIHYERFRARQLIALKENA 309
                 ****************************************************************************9999876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.2   9.1e-13   7.4e-10       1     103 [.      36     172 ..      36     185 .. 0.60

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 9.1e-13
                 EEEEEESTTSSHHHHHHHHHT.............S..TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGC................SSHHHHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg.............e..kaivsdkpgtTrdinegrvklkgkeielvDtpGl................iegaseekglgk 68 
                 ++++vG++  GKStLin+l+              +   +++++++  T   +e +v+    +i+++DtpG+                i+ ++ +  l+k
  CCD24444.1  36 NIMVVGHSGLGKSTLINTLFAshlidtatgnditKlpISKTTEMKVSTHSLIEDKVR---LNINIIDTPGFgdqinndkvwepivkyIK-EQHSIYLRK 130
                 589*****************7333333333333323345666666666666666665...67********7777677776666544322.233333444 PP

                 HHHH.......HHCTSEEEEEEETTTTCSHHHHHHHHHHHHH CS
    MMR_HSR1  69 afla.......leeadlillvvdaseeklkpldeeleellee 103
                 ++ a         ++++il+ ++ ++++l++ld    + l+e
  CCD24444.1 131 ELTAqrerhlpDTRVHAILYFLQPNNKGLTKLDIAALKKLTE 172
                 444421122223357888888876677888887776666653 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.2     6e-10   4.9e-07     101     162 ..      36     104 ..       7     107 .. 0.78
   2 ?    0.9   0.0      0.46   3.7e+02      48      86 ..     175     216 ..     154     238 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 6e-10
                  EEEEECSTTSSHHHHHHHHCTT-..----S--------------SEEEEEETT.....TEEEESS-SSS CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpel..elktgevseklgrGkhTTtavellelae.....gglliDtPGfr 162
                   +++vG+SG GKStLin+l  ++  +++tg+  +kl   k T  +v+ ++l e     +  +iDtPGf 
   CCD24444.1  36 NIMVVGHSGLGKSTLINTLFASHliDTATGNDITKLPISKTTEMKVSTHSLIEdkvrlNINIIDTPGFG 104
                  35679**************997534788888888899999999999998887755666788******95 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.46
                  EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEEEE--TTT CS
  RsgA_GTPase  48 epvivlnKiDlleeee...eleelkeelealgyevllvsakt 86 
                  +++ v+ K D l+ +e     +++++++++++++++  ++++
   CCD24444.1 175 NVIPVIAKSDALTIDErvnFRSNIQKQFQKYNFKIYPYDNED 216
                  566689999999988855545677888888888888776654 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.7   4.9e-08     4e-05       5      82 ..      36     105 ..      34     110 .. 0.83
   2 ?    4.0   0.0      0.04        33     121     172 ..     172     236 ..     158     289 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 4.9e-08
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGG CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvd 82 
                 ni+++gh   GK+TL+ +L +++ +++         +  D +k    +   +k+++ sl +++ + +in+iDtPG  d
  CCD24444.1  36 NIMVVGHSGLGKSTLINTLFASHLIDTA--------TGNDITKLPISKTTEMKVSTHSLIEDKVRLNINIIDTPGFGD 105
                 9******************977666544........2358888888888889999999988899999********765 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.04
                 TTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT..............TTEEEEE CS
    GTP_EFTU 121 egvpiivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekge..............kevpvvf 172
                 e  ++i +i K D l ++e  +  +++++++  ++++ + y++++e              +++p++ 
  CCD24444.1 172 ELANVIPVIAKSDALtIDERVNFRSNIQKQF--QKYNFKIYPYDNEdltdeelelnksirSIIPFAV 236
                 44569**********9888888899999999..4445555555555445555555554444555544 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.3   0.00019      0.15       1      25 [.      37      61 ..      37      82 .. 0.84
   2 !   14.2   0.1   4.2e-05     0.034      90     131 ..      82     126 ..      62     129 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00019
                EEEEEBTTTTHHHHHHHHHTS--S- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilp 25
                i+vvG+   GKS+++n L  +++  
  CCD24444.1 37 IMVVGHSGLGKSTLINTLFASHLID 61
                89****************9888654 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 4.2e-05
                 -EEEEEEETTS-SEEEEE---B-SSSGTTS..HHHHHHH.STTEE CS
   Dynamin_N  90 villkilsllvkgltlvDlPGldsvnkrdq..elvkeyi.kkadi 131
                  ++  i +  + +++++D+PG+ ++ ++d+  e + +yi ++++i
  CCD24444.1  82 STHSLIEDKVRLNINIIDTPGFGDQINNDKvwEPIVKYIkEQHSI 126
                 455667889999************999999999999***555544 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.6   2.1e-08   1.7e-05       2      75 ..      36     118 ..      35     176 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 2.1e-08
                 EEEEESSTTSSHHHHHHHHHTS--SS--T....TTS---SS-EEEEE....EETT..EEEEEEE--SCCCTTCCHHCHHHHHHH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFeskl....saqsvtkkcqkksr....twdg..kkinViDTPglfdlsvsadkiskeivr 75 
                 +i++vG +g GkS+ +N++  ++  ++ +    ++ ++ k+ ++k++     +d+   +in+iDTPg  d   ++dk+ + iv+
  CCD24444.1  36 NIMVVGHSGLGKSTLINTLFASHLIDTATgndiTKLPISKTTEMKVSthslIEDKvrLNINIIDTPGFGDQ-INNDKVWEPIVK 118
                 89*****************777776665310004445555555554411113343446899******8775.556666666665 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.6e-06     0.003      14      49 ..      27      59 ..      15      92 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.6e-06
      AAA_16 14 salervrsgrpelvllsGesGvGKsslvrellrale 49
                ++l+r  +    +++++G+sG GKs+l+++l+ +  
  CCD24444.1 27 RLLKRGFQ---FNIMVVGHSGLGKSTLINTLFASHL 59
                44444443...4789**************9997654 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.3e-06     0.006       6      64 ..      22      78 ..      18     101 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 7.3e-06
                HHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCCCC.CBTEEEEEEEESXXH CS
      NB-ARC  6 ekviekLlekdelqslvvalvGmgGvGKttlakqilnksdeveg.rFdsvawvvvsktdk 64
                 ++ ++Ll k ++q + + +vG  G+GK+tl++  + + + ++  + + +  + +skt +
  CCD24444.1 22 TQIEHRLL-KRGFQ-FNIMVVGHSGLGKSTLINTLFAS-HLIDTaTGNDITKLPISKTTE 78
                57889999.99999.9999***************9998.444443555666666666655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   1.1e-05    0.0087       8      38 ..      37      79 ..      34     237 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.1e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee............e 38
                ++v+G+sG GK+tl+++l+ ++ ++ +  +            +
  CCD24444.1 37 IMVVGHSGLGKSTLINTLFASHLIDTATGNditklpisktteM 79
                79******************99765544445555544444441 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-05    0.0088      40      65 ..      35      60 ..      10      69 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
                  .SEEEE--TTSSHHHHHHHHHHHHHT CS
  FtsK_SpoIIIE 40 shllvaGatgsGKStalntLilSlat 65
                   +++v+G +g GKSt +ntL +S + 
    CCD24444.1 35 FNIMVVGHSGLGKSTLINTLFASHLI 60
                  69*******************99765 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.37     3e+02       1      16 [.      41      56 ..      41      65 .. 0.85
   2 !   13.2   0.0   7.2e-05     0.059      93     159 ..      83     149 ..      61     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.37
      CLP1_P  1 GpkdsGKSTlarlLlN 16
                G++  GKSTl+ +L  
  CCD24444.1 41 GHSGLGKSTLINTLFA 56
                78899******99975 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 7.2e-05
      CLP1_P  93 ekleenkkakasgliIntpGwvkglga.ellleliealepdvvvvldqeellnelkrdlplskvkvvk 159
                 +++  ++k++ ++ iI+tpG+ ++++  ++ + ++++++ ++ ++l++ el ++ +r+lp+++v+++ 
  CCD24444.1  83 THSLIEDKVRLNINIIDTPGFGDQINNdKVWEPIVKYIKEQHSIYLRK-ELTAQRERHLPDTRVHAIL 149
                 44444568999999**********975388899**************8.799********88887764 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1     5e-05     0.041       5      90 ..      37     124 ..      34     133 .. 0.79
   2 ?   -1.1   0.1       2.3   1.9e+03      42      42 ..     216     216 ..     147     271 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikell...vkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpewekalkslvdeg 90 
                 ++++G    GK+tl+++l+ ++l   ++ ++i  + + + ++ k ++ + +++ ++ +++   +t  f D i + + we ++k++ +++
  CCD24444.1  37 IMVVGHSGLGKSTLINTLFASHLidtATGNDITKLPISKTTEMKVSTHSLIEDKVRLNINI-IDTPGFGDQINNDKVWEPIVKYIKEQH 124
                 67899999***************99988999999999999998877664333444333333.446689999*********999998865 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.3
      AAA_14  42 r 42 
                 +
  CCD24444.1 216 D 216
                 1 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.3   3.8e-05     0.031       4      91 ..      36     126 ..      34     135 .. 0.74
   2 ?   -2.4   0.0       3.9   3.2e+03     113     139 ..     165     191 ..     158     206 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.8e-05
      AAA_24   4 kiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvelaaeladyktlviDt........ideleelclaevirqnek 91 
                 +i+++G sg GK+tl+++l     +idt  G    d +k+p i++ ++++    +l +++ ++++ +iDt         d+++e +++++++q+++
  CCD24444.1  36 NIMVVGHSGLGKSTLINTL-FASHLIDTATGN---DITKLP-ISKTTEMKVSTHSLIEDKVRLNINIIDTpgfgdqinNDKVWEPIVKYIKEQHSI 126
                 79*****************.888889998876...666666.667788888888888888888888888733333333467777777777777765 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.9
      AAA_24 113 rllkklqelrknvifiahektrkdedp 139
                  +lkkl+el + + +ia+++  +++++
  CCD24444.1 165 AALKKLTELANVIPVIAKSDALTIDER 191
                 567888888888888888888777766 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   2.7     4e-05     0.033      14      36 ..      37      59 ..      34     245 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4e-05
                EEEEESTTSSHHHHHHHHTTSS- CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllk 36
                + +vG++G GKStL+++l   + 
  CCD24444.1 37 IMVVGHSGLGKSTLINTLFASHL 59
                679*************9975433 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.1e-05     0.033      33      85 ..      34      90 ..      17     107 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.1e-05
       AAA_7 33 kkpvllvGptGtGKtviikd.llkkld..kekylsltinfsaqtsan.qlqdiiesk 85
                + ++++vG++G GK+++i++ + ++l    +   ++++ +s++t+ + ++ ++ie+k
  CCD24444.1 34 QFNIMVVGHSGLGKSTLINTlFASHLIdtATGNDITKLPISKTTEMKvSTHSLIEDK 90
                5689****************6666665122334455566666666542455666665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.9e-05     0.048      24      40 ..      36      52 ..      21      60 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.9e-05
      AAA_29 24 atlltGpsGsGKSTllD 40
                +++++G+sG GKSTl+ 
  CCD24444.1 36 NIMVVGHSGLGKSTLIN 52
                6899***********95 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.7    0.0005      0.41       2      65 ..      37     110 ..      36     231 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0005
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFdnyla.....rdtlrlgati.....dveksevrflgnltlnlwDcgGqeafveey 65 
                 ++ +G+sg GK+++ + +F+  l      +d+++l ++        ++s ++    l++n++D +G  + +++ 
  CCD24444.1  37 IMVVGHSGLGKSTLINTLFASHLIdtatgNDITKLPISKttemkVSTHSLIEDKVRLNINIIDTPGFGDQINND 110
                 7999***************87665111116666654332333322234555556678999******98888773 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.7   5.5e+03      99     120 ..      12      33 ..       7      35 .. 0.80
   2 ?   12.8   0.0   0.00012       0.1       2      22 ..      37      57 ..      37     145 .. 0.91
   3 ?   -3.0   0.0       9.2   7.5e+03     102     122 ..     179     199 ..     164     206 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.7
      AAA_33  99 vrivvvetdeetlkeRlakRaa 120
                  + v ++t   ++++Rl kR +
  CCD24444.1  12 TSYVGFDTITTQIEHRLLKRGF 33 
                 5677788888999999999976 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00012
      AAA_33  2 vllvGlpGsGKstlaerllkk 22
                +++vG++G GKstl+  l + 
  CCD24444.1 37 IMVVGHSGLGKSTLINTLFAS 57
                79************9998754 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 9.2
      AAA_33 102 vvvetdeetlkeRlakRaang 122
                 v+ ++d  t+ eR+  R++ +
  CCD24444.1 179 VIAKSDALTIDERVNFRSNIQ 199
                 666777778888888887764 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1    0.0001     0.082       2      65 ..      37     102 ..      36     110 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.0001
                 EEEESSTTSSHHHHHHCHCT-CCC-E....EETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-S CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsek....ekstigvdfltkevtkikgvendkkvkkvklniWDtaG 65 
                 +++vG sg GK++l++ +  ++  ++      + + ++ +t+  +k+++ +  +++ ++++ni Dt G
  CCD24444.1  37 IMVVGHSGLGKSTLINTLFASHLIDTatgnDITKLPISKTTE--MKVSTHSLIEDKVRLNINIIDTPG 102
                 89**************99876653320000222222222221..233333322333346777777765 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0019       1.5       3      27 ..      36      60 ..      34     175 .. 0.88
   2 ?   -1.8   0.0       2.8   2.3e+03      91     121 ..     175     204 ..     167     220 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0019
   PduV-EutP  3 killiGkvgsGKttLtqalkgeelk 27
                +i+++G++g GK tL ++l   +l+
  CCD24444.1 36 NIMVVGHSGLGKSTLINTLFASHLI 60
                69*************9999876655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.8
   PduV-EutP  91 eviGiitkidlaedeenieaveelLksaGae 121
                 +vi +i k d  + +e+++  ++ +++   +
  CCD24444.1 175 NVIPVIAKSDALTIDERVNF-RSNIQKQFQK 204
                 68999999999888888876.4445544444 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   1.0    0.0018       1.5       2      29 ..      36      66 ..      35     103 .. 0.56
   2 ?   -2.4   0.0       3.6   2.9e+03     121     145 ..     158     183 ..     142     188 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0018
                EEEEEESTTSSHHHHHHHHHTTS...EEEEE CS
      FeoB_N  2 tvalvGnpnvGkttlfnaltgak...qkvgN 29
                ++++vG    Gk+tl+n+l  ++   +  gN
  CCD24444.1 36 NIMVVGHSGLGKSTLINTLFASHlidTATGN 66
                6899**************9877622234444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.6
                 TTEEE-HHHHHHHHT.S-EEEEBTTT CS
      FeoB_N 121 kgieidlkkLsekLg.vpvvktsakk 145
                   +++d+++L++  +  +v++++ak+
  CCD24444.1 158 GLTKLDIAALKKLTElANVIPVIAKS 183
                 44688999998888734688888876 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00045      0.37      27      84 ..      32      94 ..      16     104 .. 0.75
   2 ?   -3.4   0.1       4.6   3.7e+03     162     181 ..     168     187 ..     163     204 .. 0.64

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00045
                S-SEEEEEEE-TTSSHHHHHHHHH.HHHHC..TT--EEEEEE-----..-------------H CS
        MeaB 27 GraqvvGltGvPGaGkstlvealg.lelrr..rGkrvavlavDPssp..ftGGsilGDklRle 84
                G    + + G  G Gkstl++ l   +l++   G+ ++ l +  + +  ++  s++ Dk+Rl+
  CCD24444.1 32 GFQFNIMVVGHSGLGKSTLINTLFaSHLIDtaTGNDITKLPISKTTEmkVSTHSLIEDKVRLN 94
                566678899************975157775226899999999888752257889999999997 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.6
                 -CCCHHH-SEE.EEE---HHH CS
        MeaB 162 kkGileiaDii.vvnkaDkke 181
                 kk + e+a++i v+ k+D   
  CCD24444.1 168 KK-LTELANVIpVIAKSDALT 187
                 44.778988765889999443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 2424.35
//
Query:       CCD24445.1  [L=318]
Description: hypothetical protein NDAI_0D01310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-08   33.7   0.0      4e-08   33.0   0.0    1.2  1  MTS              Methyltransferase small domain
      7e-07   29.2   0.0    9.5e-07   28.7   0.0    1.2  1  Methyltransf_31  Methyltransferase domain
     0.0011   19.6   0.0     0.0017   19.0   0.0    1.4  1  Methyltransf_25  Methyltransferase domain
     0.0013   18.3   0.1      0.002   17.6   0.1    1.3  1  AviRa            RRNA methyltransferase AviRa
     0.0014   18.3   0.0     0.0025   17.5   0.0    1.4  1  Cons_hypoth95    Conserved hypothetical protein 95
     0.0024   17.6   0.0     0.0037   17.0   0.0    1.3  1  UPF0020          Putative RNA methylase family UPF0020
      0.005   16.2   0.0     0.0074   15.6   0.0    1.2  1  N6_Mtase         N-6 DNA Methylase
  ------ inclusion threshold ------
      0.056   12.6   0.0       0.09   11.9   0.0    1.2  1  TRM              N2,N2-dimethylguanosine tRNA methyltransfera
       0.14   11.6   1.2        2.4    7.6   0.3    2.5  3  CheR             CheR methyltransferase, SAM binding domain
       0.17   12.6   0.0       0.32   11.8   0.0    1.4  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   2.2e-11     4e-08      33     114 ..     119     209 ..      99     217 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2.2e-11
                 SEEEEET-TTSHHHHHHHHHTTC.E....EEEEESBHHHHHHHHHHHHHTTGC.EEEEE-STTTTST.T...S-EEEEEE---STTTCHCH CS
         MTS  33 gkvlDlGcGaGvlgaalakespeae....vtlvdvdarAlesakenleankle.vevvasdvleeve.e...kkfdlivsNPPfhagkate 114
                  ++ Dl++G G +++  ++e ++a+    +t++d + +A+ + k n+++ k++ ++v + ++l+  + +   +++d++++NPP+  +++ +
  CCD24445.1 119 LSIWDLCSGSGCISLLSKSELNKADiksnITAIDLSSAAISLIKLNMQKLKIQaINVKQLNILDCGPtNnsfQEIDVLICNPPYIPKHDFN 209
                 2499**********98877766543223499**********************9999999988744422112689********98777655 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   5.3e-10   9.5e-07       3      84 ..     117     202 ..     115     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 5.3e-10
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgp...kaevvGiDiseeaielArenaqklgldnveFeqgdiee.lekl.ledekfDlilsnevl 84 
                      k l++ Dl +G+G +++   +el++   k++++ iD s  ai+l + n qkl+++ ++++q +i +  +++    + +D++++n + 
       CCD24445.1 117 KPLSIWDLCSGSGCISLLSKSELNKadiKSNITAIDLSSAAISLIKLNMQKLKIQAINVKQLNILDcGPTNnS-FQEIDVLICNPPY 202
                      678999***************9999866677***********************************8887642.389******9554 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   9.6e-07    0.0017       1      83 [.     121     209 ..     121     222 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 9.6e-07
                      EEEET-TTSHHHHHHHCTS.T...SSEEEEEESSHHHHHHHHHHHHHTTT.TEEEEESBCCGBSSSTTTE...EEEEEESTGGGSSHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.g...kakvtgvDiseemleaareraeeegl.nvefvqgdaedlpfedgsf...Dlvvssgalhhlsdedle 83 
                      + dl+ G+G ++l    +l +   k+++t++D+s++++  ++ ++++ ++  +++ q ++ d+   ++sf   D+ +++    +++++d  
       CCD24445.1 121 IWDLCSGSGCISLLSKSELnKadiKSNITAIDLSSAAISLIKLNMQKLKIqAINVKQLNILDCGPTNNSFqeiDVLICN--PPYIPKHDFN 209
                      679******9999988888524589********************9988889999999999988777766222555553..4566666655 PP

>> AviRa  RRNA methyltransferase AviRa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.1e-06     0.002      42     112 ..     106     178 ..      98     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
       AviRa  42 alellekkeegapltlyDpCCGgay..LltvlgllhgkkikkvlasDvdeevlelakkNLsLLtkeglakree 112
                  +++ ++++  +pl+++D C G++   Ll+   l +++  ++++a D ++++++l k N++ L  ++++ ++ 
  CCD24445.1 106 LIKYWKNHQLRKPLSIWDLCSGSGCisLLSKSELNKADIKSNITAIDLSSAAISLIKLNMQKLKIQAINVKQL 178
                 456777788899***********9633788888888888889*********************9999987765 PP

>> Cons_hypoth95  Conserved hypothetical protein 95
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.4e-06    0.0025      44     126 ..     120     205 ..     104     226 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.4e-06
                    EEEETT-TTSHHHHHHHHTT-.....SEEEEEES-HHHHHHHHHHHCCCT--TTTEEEEES-HHHHCTS--SS-EEEEEEE--SSSTT CS
  Cons_hypoth95  44 rvLDlfaGsGalglEAlSRga.....kkavlvekdkeavkilkenleelkleeetaelkedaleallklakkkeefdivflDPPyake 126
                    ++ Dl++GsG ++l   S        +++++++ +++a++++k n+++lk+++ +++ + + l+  +++ +  +e+d+   +PPy  +
     CCD24445.1 120 SIWDLCSGSGCISLLSKSELNkadikSNITAIDLSSAAISLIKLNMQKLKIQA-INVKQLNILDCGPTN-NSFQEIDVLICNPPYIPK 205
                    566999999999997777532112225789********************996.444444444445555.677899*********765 PP

>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.1e-06    0.0037      69     131 ..     137     202 ..     102     214 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.1e-06
                 HHHHHHHH--..EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--...STTS---EEEE---- CS
     UPF0020  69 aeeearaelk..lygsDldrrvvqgareNaekagvgdliefsqadaakLr...lkegevdvivtnpPY 131
                  e ++  ++k  + ++Dl ++++   + N +k +++  i+++q+++ +     ++ +e+dv+++npPY
  CCD24445.1 137 SELNKA-DIKsnITAIDLSSAAISLIKLNMQKLKIQ-AINVKQLNILDCGptnNSFQEIDVLICNPPY 202
                 333333.33335**********************97.689999999998865566779********** PP

>> N6_Mtase  N-6 DNA Methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.1e-06    0.0074      48     138 ..     119     205 ..     100     228 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4.1e-06
    N6_Mtase  48 esvyDpacGsggllvqaekvlkeedgktkelsiyGqeknettyrLakmNlllhgieykkvkirlgdtle.kpkfekdkkfdvvvaNppfnqk 138
                  s+ D ++Gsg + + +++ l+   +   + +i   ++ + ++ L k+N+    i+   +++++ + l   p  ++ +++dv + Npp+  k
  CCD24445.1 119 LSIWDLCSGSGCISLLSKSELN---KADIKSNITAIDLSSAAISLIKLNMQKLKIQA--INVKQLNILDcGPTNNSFQEIDVLICNPPYIPK 205
                 48***********999999886...444455677889************96433333..33444444431344445679**********776 PP

>> TRM  N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     5e-05      0.09      43     125 ..     111     194 ..      97     202 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5e-05
                 HHHHH-S-EEEEESS-TTSHHHHHHHHH-S-...EEEEEEE-S-HHHHHHHHHHHHHTT--GGEEEE-S-HHHHHC.--SS-EEEEE CS
         TRM  43 lkkklgekikvldaLsasGlRaiRfalEvpg...vkevlaNDisekAvelikeNvklneveeivvineddAnvlla.ekkkrfdviD 125
                 ++++l +++++ d  s+sG  ++    E+++   ++++ a D+s+ A+ lik N++  +++    in ++ n+l    +++ f+ iD
  CCD24445.1 111 KNHQLRKPLSIWDLCSGSGCISLLSKSELNKadiKSNITAIDLSSAAISLIKLNMQKLKIQA---INVKQLNILDCgPTNNSFQEID 194
                 44566679******************99987332579*****************88777776...2222234443345666666666 PP

>> CheR  CheR methyltransferase, SAM binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.081   1.5e+02     129     147 ..      70      90 ..      29      91 .. 0.65
   2 ?    7.6   0.3    0.0013       2.4      22      79 ..     108     160 ..      92     180 .. 0.70
   3 ?   -1.3   0.0      0.69   1.2e+03     118     142 ..     171     198 ..     160     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.081
                 T..-SGGG--EEEEEE-SSGG CS
        CheR 129 e..kksvlgklDvifcrnvli 147
                      +++g+l +i  rnvli
  CCD24445.1  70 YilGTQPFGSLNIICKRNVLI 90 
                 333578999***********8 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0013
                 HHHHHHHTSSSEEEEEES-TTTHHHHHHHHHHHCHSTTTSSS-EEEEEEESSCHHHHH CS
        CheR  22 pllakaknekrvriwsagcssGeEpYslAmllketlpkaaklkvkilAtDidlkvlek 79 
                 +  ++ + +k+++iw   ++sG     +++l k+   ++a++k +i+A+D+++++++ 
  CCD24445.1 108 KYWKNHQLRKPLSIWDLCSGSGC----ISLLSKS-ELNKADIKSNITAIDLSSAAISL 160
                 34444555589******999994....5555555.67777889**********99975 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.69
                 TTEEEEE--TTT...-SGGG--EEEEEE CS
        CheR 118 elvkFeklnlle...kksvlgklDvifc 142
                 + ++ ++ln+l+   +++ ++++Dv++c
  CCD24445.1 171 QAINVKQLNILDcgpTNNSFQEIDVLIC 198
                 5688899999998888899999999999 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00018      0.32      18      72 ..     139     198 ..     123     200 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00018
  Methyltransf_12  18 l....pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg....ssfDlvva 72 
                      l    + +++t++D+s++ai   k  ++k +    + +++++l++ld  +     +  D+ ++
       CCD24445.1 139 LnkadIKSNITAIDLSSAAISLIKLNMQKLKI---QAINVKQLNILDCGPTnnsfQEIDVLIC 198
                      24457999************888888777775...6677777777766555666778888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2286.29
//
Query:       CCD24446.1  [L=339]
Description: hypothetical protein NDAI_0D01320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-08   33.4   0.0    5.5e-08   32.7   0.0    1.3  1  FMN_red       NADPH-dependent FMN reductase
     0.0007   19.8   0.5     0.0041   17.3   0.1    2.4  2  Flavodoxin_1  Flavodoxin
  ------ inclusion threshold ------
      0.073   12.8   0.8       0.12   12.1   0.0    1.7  2  Flavodoxin_2  Flavodoxin-like fold


Domain annotation for each model (and alignments):
>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   9.2e-12   5.5e-08       1     144 [.       1     141 [.       1     147 [. 0.83

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 9.2e-12
                 -EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS.--..---HCHGHT.CGGSHHHHHHHHHHHH-SCEEEEEEECTTCE-HHHHHHHHCH CS
     FMN_red   1 mkilvisGSlrkgsntrklaewaaealkeagaevelidladlilpcalcdkdlese.gqtsddvaellekiaaadaliivtPeYngsysgllKnalDrl 98 
                 mki++i  S+   +    la+++++ ++ +g +++++++ +  l    ++ d+ s+  ++sd   + ++++ + da++++ P+ +g+ +++  +++D +
  CCD24446.1   1 MKIAIITYSTY--GHITNLAKAVQSGIESMGGHADIFRVEET-LT--QVVLDKMSApPKPSDIPVATKDTLIEYDAFLFGIPTRFGNLPAQWCAFWDKT 94 
                 78888877764..88899*********999***********8.55..33334444437778888999******************************** PP

                 T-.SSCHCCTT-EEEEEEE-SSTTTTHHHHHHHHHHHH.HTT-EEEE CS
     FMN_red  99 srtrgkkelrgKpvalvavgggrrgglraeeqlrqvla.elgaivvp 144
                 + ++ k +l gK+++l++  ++  gg++++ +    +  ++g i+vp
  CCD24446.1  95 GSIWVKGQLDGKIAGLFVSTASYGGGQEVTIKTCLNYLaHHGIIYVP 141
                 **************888777788999999887765555477777776 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   6.8e-07    0.0041       1     130 [.       5     122 ..       5     131 .. 0.78
   2 ?   -2.2   0.0       0.7   4.2e+03      90      90 ..     197     197 ..     152     264 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.8e-07
                   EEEETSSSHHHHHHHHHHHHHHHTTTEEEEEEEEGTTSCGGGGGTHSEEEEEEEEETTTBEEGGGHHHHHHHHHHHCHHGCCSTTTTEEEEEEEEEC CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelgehgfnadvvslsdydeslseieeealllvvtsTfgnGdppengesffqdllelkgdeledgdlsgvrfavfglGd 97 
                   i+ +S++G+  +lAk+++ ++++ g +ad++++++     + + +++ +    s    + p  +  +  + ++ l+g +   + + ++  ++ +++d
    CCD24446.1   5 IITYSTYGHITNLAKAVQSGIESMGGHADIFRVEETLT--QVVLDKMSAPPKPS----DIPVATKDTLIEYDAFLFGIP---TRFGNLPAQWCAFWD 92 
                   7889**********************999998888883..45555555555555....555555555555555566543...4589999******** PP

                   TTSSSTTHHHHHHHHHHHHTTCEEESSSEEEET CS
  Flavodoxin_1  98 sayenFcaagkkldekleelGaerllkllegde 130
                   ++++   ++ ++ld k+ +l++++    + g+e
    CCD24446.1  93 KTGSI--WVKGQLDGKIAGLFVSTASY-GGGQE 122
                   *****..**************999887.66665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.7
                   E CS
  Flavodoxin_1  90 f 90 
                    
    CCD24446.1 197 S 197
                   1 PP

>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.9e-05      0.12       1     136 [.       1     116 [.       1     139 [. 0.73
   2 ?   -2.8   1.0       0.7   4.2e+03     118     153 ..     205     240 ..     186     269 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
                   -EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCC.T-----CCCCHCCHHHHTTC.HHHHHHHHHHHHCSSEEEEEEE-BTTB--HH CS
  Flavodoxin_2   1 mkiLiinahprpeksfssalaqafvealekagphevtvrdLyad.flpvlttrdlaaklayeekp.adveseqiekllaadaivlqfPlwwfgvPai 95 
                   mki ii  +  +  +   +la+a+ +++e+ g    +++ + ++    vl++      ++++ kp     + + + l + da +++ P  + ++Pa+
    CCD24446.1   1 MKIAIITYSTYG--HI-TNLAKAVQSGIESMG-GHADIFRVEETlTQVVLDK------MSAPPKPsDIPVATK-DTLIEYDAFLFGIPTRFGNLPAQ 86 
                   888889888887..45.7999*********99.7799999999855555554......444444635556677.99********************* PP

                   HHHHHHHHS-TTTSCEETTCSSCCCCTTTTSEEEEEEEESS CS
  Flavodoxin_2  96 lKgwiDrvltagfafyteeggegrgggLkgkkalvivttGg 136
                     ++ D+    g +          +g L gk a + v+t +
    CCD24446.1  87 WCAFWDKT---GSIW--------VKGQLDGKIAGLFVSTAS 116
                   ******96...4433........246666777777777644 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.7
                   CCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHH CS
  Flavodoxin_2 118 grgggLkgkkalvivttGgpeesyqerglegaamde 153
                   +++++ k k  +   t+G ++++  + g  g++ d+
    CCD24446.1 205 KTSNRDKEKGTMATGTAGTTGATEAAVGAGGRSGDD 240
                   334444445555544444444444444444444454 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2599.42
//
Query:       CCD24447.1  [L=350]
Description: hypothetical protein NDAI_0D01330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.43   11.6   3.5        0.8   10.7   3.5    1.4  1  EBP50_C   EBP50, C-terminal


Domain annotation for each model (and alignments):
>> EBP50_C  EBP50, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.5   4.5e-05       0.8       5      80 ..     153     230 ..     149     269 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.5e-05
     EBP50_C   5 FkkckvvPteehltg...plPepvvnle.aeeksneeeleeeelsellsksrklsssasessassetsleessskespea 80 
                  ++++ +P+++  ++   p P+p+++++ ++   n++++ + ++s +l++  +lsss+ +ss++++   ++ ++ +  ++
  CCD24447.1 153 SNRLGFAPSSAPSSVsksPSPQPLTQKNiVSTSNNNISVLSTSTSPILTPAVPLSSSSLSSSTTTTH--PTITTTTINNN 230
                 567778888766444444**********989999999999999999998887777776555554422..22222221111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1126  (0.0628033); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2786.08
//
Query:       CCD24448.1  [L=427]
Description: hypothetical protein NDAI_0D01340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.61    9.9  11.4       0.97    9.3  11.4    1.3  1  Myc_N     Myc amino-terminal region
        1.1    7.3  15.3        1.3    7.0  15.3    1.1  1  AF-4      AF-4 proto-oncoprotein
        1.1    7.4  18.5        1.5    7.0  18.5    1.1  1  Nop14     Nop14-like family
        1.3    7.6   8.6        1.8    7.1   8.6    1.2  1  Hamartin  Hamartin protein
        5.6    6.7   7.1        8.4    6.2   7.1    1.2  1  TMEM51    Transmembrane protein 51


Domain annotation for each model (and alignments):
>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  11.4   0.00027      0.97     199     272 ..     121     213 ..      78     239 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00027
       Myc_N 199 e..............saalaldppas....ssssasaassssssdskalssseedvlsesdeeeeeeeeeeeeidV..Vtvekrrssskrkevs 272
                 +              + +++l+p+++    ss+s s++ss s s+  ++ +se+++++ ++ee+eeee eeee+    + +e    +++++e+ 
  CCD24448.1 121 QydskiedhnidiasKISSQLAPASNseftSSASVSGTSSASDSEL-DEITSENETNEGEEEEAEEEEAEEEEVGKeeIEIETDTDTENENESK 213
                 0444444444554433333344444434423334444444444444.44445555555556666666666666533113334333334434433 PP

>> AF-4  AF-4 proto-oncoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  15.3   0.00037       1.3     422     512 ..      97     190 ..      78     253 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00037
        AF-4 422 smLeddLklsssedsdeeqapekp..ksssapssapqstpes..vesahsssaeSeSsSeSeSSSeSDSesEssssdseanepprtatpepeppa 512
                    ed + l+++e+++++++++ +  +s+ ++ +   +++ s   ++a +s+   +S S S  SS SDSe +  +s+ e+ne  + ++ e e+ +
  CCD24448.1  97 KRVEDAIVLNEEEKENQQEVASGSqyDSKIEDHNIDIASKISsqLAPASNSEF-TSSASVSGTSSASDSELDEITSENETNEGEEEEAEEEEAEE 190
                 45688888888888877744433301333344444433333311444444444.567799**********9999********9999987766554 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  18.5   0.00041       1.5     304     461 ..     109     283 ..      97     299 .. 0.34

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00041
       Nop14 304 eekkkkkkkeasaDdldddfvleeeeeeeefglgkglka..........taeeeeeededdfeedddlveseseeee.eeeeedeeeeedeeeeeeeee 391
                 e++++++         + +   +++ e+ ++++ +++++          t         ++ + + + ++s+se +e  +e+e +e ee+e eeee+ee
  CCD24448.1 109 EKENQQE--------VASGSQYDSKIEDHNIDIASKISSqlapasnsefT---------SSASVSGTSSASDSELDEiTSENETNEGEEEEAEEEEAEE 190
                 1111111........11222222222333333333332122222222221.........1111122223333333333222222222222222222222 PP

       Nop14 392 deddlsdlese......eeeeedeleeelleeekkaaeekkekk.................kkkkkseekakeelpytfpcPesheellelle 461
                 +e  +++ e e      +e+e++++++ + ++ +++++++k+ k                 ++ ++++ ++ +++ ++f+  e +  ++ +++
  CCD24448.1 191 EEVGKEEIEIEtdtdteNENESKNFNNLNFKTIDQESSFAKRFKfnfhecindivdktsrlNRYTQDSLSTVASVDFIFHSIEFIVLFNYIFK 283
                 222222222111110012222233322223333333333333335555666666665555545555555555566666655555555555555 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   8.6   0.00051       1.8     408     531 ..     120     249 ..      75     268 .. 0.60

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00051
    Hamartin 408 sspprkdeks.esskpdlskqeevenekeleeslk..skssvtlseLsdvikel..leaesedsvekeeeeaai.sqelseiteekketlvsrggldsp 500
                 s+  +k e +     +++s+q   +++ e+++s++   +ss++ seL +++ e+   e e+e+++e+e ee+++ ++e++  t++++e     + ++  
  CCD24448.1 120 SQYDSKIEDHnIDIASKISSQLAPASNSEFTSSASvsGTSSASDSELDEITSENetNEGEEEEAEEEEAEEEEVgKEEIEIETDTDTENENESKNFNNL 218
                 2222222222133344466665555555555555556888999999999998885533333444443333333314445444555556678999***** PP

    Hamartin 501 fsrtleslaksqrrkrlasalssesisdaeg 531
                 +++t++++++  +r ++++  + + i d+++
  CCD24448.1 219 NFKTIDQESSFAKRFKFNFHECINDIVDKTS 249
                 *********9998777777766664544443 PP

>> TMEM51  Transmembrane protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.1    0.0023       8.4      92     220 ..     112     239 ..     102     246 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0023
      TMEM51  92 eeeelaraqeslqeeeeeqeeeesaeeaasryavPsYeEvvtsgeypvrqsnlrestsqLPsyedlvevdeneaeeeae.aeaaasaeepsaaaasrsn 189
                 +++e ++++++ + ++ e ++ + a + +s+ a  s  E  +s + + + s   ++  ++ s ++  e +e+eaeee+  +e+ +++e  +++ ++++n
  CCD24448.1 112 NQQE-VASGSQYD-SKIEDHNIDIASKISSQLAPASNSEFTSSASVSGTSSASDSELDEITSENETNEGEEEEAEEEEAeEEEVGKEEIEIETDTDTEN 208
                 1122.22233333.33333333444555555555566666666665556666668899999999999998887766554377889999999999***** PP

      TMEM51 190 srasrllkplkvrrikseklhlkdfrlnlse 220
                 +  s++++ l+ + i  e    k f+ n +e
  CCD24448.1 209 ENESKNFNNLNFKTIDQESSFAKRFKFNFHE 239
                 ************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2295  (0.128005); expected 358.6 (0.02)
Passed bias filter:                      727  (0.0405488); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 2822.44
//
Query:       CCD24449.1  [L=292]
Description: hypothetical protein NDAI_0D01350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.2e-50  170.5   0.0    4.7e-50  170.4   0.0    1.0  1  CN_hydrolase  Carbon-nitrogen hydrolase


Domain annotation for each model (and alignments):
>> CN_hydrolase  Carbon-nitrogen hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.4   0.0   2.6e-54   4.7e-50       1     260 [.      10     270 ..      10     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: 170.4 bits;  conditional E-value: 2.6e-54
                   EEEEEEBB-STTHHHHHHHHHHHHHHHHHHT..TESEEEEETTTTTBSSSHHHHHHHHB.....HSSSHHHHHHHHHHHHHTEEEEEEEEEEEC.CT CS
  CN_hydrolase   1 rvAvvQlpqkaadleanlqklleliaeAark..gadLivlPElfitgykeeahfleaAe.....aglgetlallaalarkngiavviglierel.tn 89 
                   +vA++Q ++ + ++  nlq+++++i++A+ +  ++++ + P +f+ +y +  +f ++Ae      +  +tl  l++++ k++i++v+g i++ + t 
    CCD24449.1  10 KVALIQFKSSNVNKLINLQNVEKFIDKAMIQqpDTKINCPPRMFNSPY-SIYKFKDYAEpisstDLTTPTLSILSKISLKYKIILVGGSIPELDpTT 105
                   79*******999***************99888****************.555555555555555999*********************888866799 PP

                   TEEEEEEEEEEEETTSEEEEEEE-SS--E.ECTTSCECCGHHTSCS-SSS-EEEETTEEEEEEEGGGGGSHHHHHHHHHTT-SEEEE.BH.GCCCTC CS
  CN_hydrolase  90 gklqayntavlldldgklvgkyrKlhLfp.geprpptaverelfepgdgipvfdtpvgkiGaaiCyeigfpellralalkgaeilvn.lserapvpk 184
                    kl  ynt +++++ g+l+gk+rK hLf+ ++p++ t+ e+++++pg + + ++t +g+iG+ iCy+ +fpel+++ a+k+a ++++ +     +  
    CCD24449.1 106 SKL--YNTSIIFNEMGQLIGKHRKAHLFDiDIPNGITFKESTTLSPGSKATTLKTTYGNIGIGICYDLRFPELAMISARKNAFVMIYpG----AFNT 196
                   999..********************************************9999**********************************62....4677 PP

                   HHHHHHHHHHHHHHHHHHTSEEEEEEBEEEHCETTEEEE--EEEE-TTS-EEEECCSSSTEEEEEEEEHHHHHHHH CS
  CN_hydrolase 185 smgppqwellgraralengcfviaanqvggyeqlilwpvghSaiidpdGrilaglgeeeegvliaeidladvratr 260
                    +gp +w+ll+++r+++n++++i ++++ +  +++++ +ghS +++p+G+i+a++ge ee ++ a++d  +++ +r
    CCD24449.1 197 VTGPMHWHLLAKSRSIDNQIYTILCSPARN-LESDYHAYGHSLVVNPKGEIIAEAGEGEE-IVFATLDPMEIENFR 270
                   9*****************************.****************************7.*******99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2139.87
//
Query:       CCD24450.1  [L=394]
Description: hypothetical protein NDAI_0D01360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-18   65.8   0.0    1.5e-17   63.7   0.0    2.2  2  GST_N_2   Glutathione S-transferase, N-terminal domain
    6.6e-10   38.9   0.0    1.2e-09   38.0   0.0    1.4  1  GST_C_2   Glutathione S-transferase, C-terminal domain
     0.0029   18.0   0.0        1.1    9.7   0.0    2.6  2  GST_N_3   Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   2.5e-21   1.5e-17       2      69 ..      33     203 ..      32     204 .. 0.95
   2 ?   -2.9   0.0       1.5   8.8e+03      25      47 ..     364     384 ..     339     385 .. 0.46

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 2.5e-21
                 -HHHHHHHHHHHHCT--EEEEEE.H...-TTSHHHHH.............................................................. CS
     GST_N_2   2 CPwahRvlialalkglediisvv.vlepkgfekseef.............................................................. 37 
                 CP+ahR+lia+ l+gl d i  + v+++   +ks+e+                                                              
  CCD24450.1  33 CPFAHRALIARSLLGLNDLIGISvVHWHLEPSKSWELfvppnndtvsdedtrrsltdseinieskneqgqeqakwkiddrffqvdggiittrcnesass 131
                 *******************998668*********999************************************************************** PP

                 ......................................HHHCTTTSSSEEE-CTTE..EEESHHHHHHHHHH CS
     GST_N_2  38 ......................................prlnprgtVPvLwdkdgq..vineSseIlrylet 69 
                                                        ++++r tVPvLwd + +  ++neSseI+r++++
  CCD24450.1 132 fadikvddkrewfdftydpienvhylrelydksekyydCKYTGRITVPVLWDSQRKtiINNESSEIIRIFNS 203
                 ************************************999999**********744467999*********97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.5
                 H...-TTSHHHHHHHHCTTTSSS CS
     GST_N_2  25 vlepkgfekseefprlnprgtVP 47 
                 ++   g+++    p++np+g  P
  CCD24450.1 364 DHLKLGYTR--SQPKINPLGITP 384
                 222223332..247778877666 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0     2e-13   1.2e-09       1      68 [.     251     346 ..     251     347 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 2e-13
                 HHHHCHHHHHCCHCHHHCTTT--.....................-SS.CTTCS--HHHHHHHHHHHHHHHHHHS-......---.TT-HHHHHHHH CS
     GST_C_2   1 eaaveraleqldaaldaleahLa.....................dspflfGdqptlaDialapflvrlraagpgf......dir.eaypnlraWle 68 
                 ++++er++ +l++ ld++ea+L                      ++ ++ G+++t +Di+l+p+++r++++++++       ir  +y+ l+ Wl+
  CCD24450.1 251 PQVYERIVLNLFKYLDKIEAILSknyskleerysrdkdsndeimKRYYMVGEEITEVDIRLYPTIIRFDTVYYQHfkcnlkMIRsNEYKYLNLWLK 346
                 578999999**************************986666665555************************9988899777666669999999997 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00019       1.1       1      23 [.      27      49 ..      27      78 .. 0.75
   2 !    5.5   0.0    0.0037        22      39      67 ..     170     201 ..     146     209 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00019
                EES-TTSHHHHHHHHHHHHHT-- CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglp 23
                Ly + ++p+a r+ +a  ++gl 
  CCD24450.1 27 LYVSLGCPFAHRALIARSLLGLN 49
                99*******************96 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0037
                 HHH-TT--SSEEETTS-...EEESHHHHHHHH CS
     GST_N_3  39 laknplgkvPvLeddge...altdSlaIidyL 67 
                 ++++++ +vPvL d ++   +  +S++Ii+ +
  CCD24450.1 170 CKYTGRITVPVLWDSQRktiINNESSEIIRIF 201
                 788899******98744444445*****9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       734  (0.0409393); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2892.09
//
Query:       CCD24451.1  [L=398]
Description: hypothetical protein NDAI_0D01370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.7e-176  584.8   0.8   6.6e-176  584.6   0.8    1.0  1  Gsf2      Glucose signalling factor 2


Domain annotation for each model (and alignments):
>> Gsf2  Glucose signalling factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  584.6   0.8  3.7e-180  6.6e-176       1     371 [.       1     379 [.       1     381 [. 0.97

  Alignments for each domain:
  == domain 1  score: 584.6 bits;  conditional E-value: 3.7e-180
        Gsf2   1 leiyvRlndDlekDyafqvkkedtlkdkllkifekek....glakllvLrPsifykkkPvgfkksihpGyltedGcllfdydadeekylekldedkkil 95 
                 +e+y+RlndD+ekDyafq+++++++++kl++if+++k    +la+++vLrPsif++ kP +f+ks+hpGylte+Gcl+fdydad  +y++k+de+k+++
  CCD24451.1   1 MEVYLRLNDDTEKDYAFQISRDEKINTKLSQIFSTDKnnekALANTMVLRPSIFHNYKPDYFNKSTHPGYLTEGGCLIFDYDADLPQYISKIDEEKPLF 99 
                 9********************************998878889********************************************************* PP

        Gsf2  96 dqlWPgqLilPkwelskknilsfvaillaWLYtDlPDvisPtPGiCltnqlsrlliklaea.lelkklaeklreeiqvnsssvlaqilffvlhivkvll 193
                 dqlWPgqLilPkw+++kk+i+++ +i+l+WLYtDlPDvisPtPGiC+tn lsr+li+++e+ +++ +la+klreeiq+n+ss++aq++ff++hi+k+ l
  CCD24451.1 100 DQLWPGQLILPKWSYNKKYITIYSMIMLFWLYTDLPDVISPTPGICVTNLLSRILIPILEKgFDSIDLANKLREEIQPNYSSFWAQWCFFIFHILKIGL 198
                 **********************************************************9998************************************* PP

        Gsf2 194 itlllklGlvnpisfnpikvlklkk...kelskkkdelkeelkslGWiGarratldeYkekyyeykikkaGgavqayraGllkklanpGveLeeGeGfq 289
                 itl+l+lG++npi+fnpi+++kl++    +   k+d+lk+ l+s+GWiG++++ +d+Y++++y+y+i+k+Gg vqayraG++k++a+pG++L++GeGfq
  CCD24451.1 199 ITLFLQLGIANPITFNPITIIKLTTaasPQEFIKNDDLKHLLRSIGWIGSKKGGYDSYQSNFYSYIINKFGGPVQAYRAGMIKTAAKPGIPLNNGEGFQ 297
                 *********************9998333344689***************************************************************** PP

        Gsf2 290 tpleerftlktleeieeeekfilseeyfveleknlkenlekkegdvgklneeikrfRryGllesdeklkklvklRkevaeek 371
                 tpl+erft++t++++ee++kfilseeyf+ele+nlkenl+ +egdvgk+neei+rfRr+Gl+e++ek+kk+v++Rk+v+ ++
  CCD24451.1 298 TPLNERFTADTFKTMEETGKFILSEEYFIELENNLKENLDLCEGDVGKMNEEIRRFRRFGLYEPNEKIKKMVAKRKQVYLND 379
                 *****************************************************************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1265  (0.0705561); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2954.74
//
Query:       CCD24452.1  [L=1417]
Description: hypothetical protein NDAI_0D01380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.7e-48  164.5   1.4    3.4e-47  161.3   0.9    2.4  2  CPSF_A       CPSF A subunit region
    2.2e-47  161.8  23.0    2.2e-47  161.8  23.0    3.0  3  MMS1_N       Mono-functional DNA-alkylating methyl methanesul


Domain annotation for each model (and alignments):
>> CPSF_A  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.032   2.9e+02      93     145 ..     517     574 ..     512     576 .. 0.82
   2 !  161.3   0.9   3.8e-51   3.4e-47      77     321 ..    1066    1381 ..    1044    1382 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.032
                 ---EEEETTEEEEE-SSEEEEEEE-TTS-EEEEEEEE-SS......-EEEEEEETTEEE CS
      CPSF_A  93 vtalaefqGrllvgvgqkvrvydlgedktLlrkafldtql......yvvslkvlgnrii 145
                 +  ++++++ l ++++++ ++ +++ d+ +   +f  t+       +++ +k lgn+ii
  CCD24452.1 517 PKTVSHYHDILFLAFNNSMIILKIKPDS-MENLSFKHTNPfimkndCTLLIKKLGNLII 574
                 67899***********************.999999888875555556666677777766 PP

  == domain 2  score: 161.3 bits;  conditional E-value: 3.8e-51
                  --EEEEEEEEEEEES----EEEETTEEEEE-SSEEEEEEE-TTS-EEEEEEEE-SS.....-EEEEEEETT.EEEEEESSS-EEEEEE-S.SS--EE CS
      CPSF_A   77 tnrkLklvhkeevkgavtalaefqGrllvgvgqkvrvydlgedktLlrkafldtql.....yvvslkvlgn.riivgDlmkSvtfveyde.enykli 166 
                  +n kL+ +h++ + + ++ ++ef+  +l++  +++++ +lg+++ Ll+k+ + ++      ++v++++ +n ri+vg l +Svtf+++d+  n+ +i
  CCD24452.1 1066 SNFKLESLHETLISDHIYTMVEFNQMILLSSLNNLILLNLGKKQ-LLKKSITIISKklsikKIVKITQWNNeRIAVGELNESVTFFQFDSlTNS-FI 1160
                  689*****************************************.****99866656688989999988888******************5555.** PP

                  EEEEESS---EEEEEEE--SSSEEEEEETTSEEEEEE--TTSGGGTTTT..........................................EEEEEE CS
      CPSF_A  167 lfardtqkrwvtaaeflvdgedtvlvaDkfgnlfvlrydpeasessdgdp.........................................rleera 222 
                  ++a+d++kr+vt++ fl d+ +tv+++Dkfgn+++lr+  e+  ++   +                                         +l+  +
  CCD24452.1 1161 PLADDITKRHVTSLLFL-DK-STVIGGDKFGNVWTLRLSRENERKVLNAQsianasassssssslsfqellnrnitkstqinksniydvpfKLKLLN 1255
                  *****************.99.8*****************988888777778********************************************** PP

                  EEE-SS----E...EEEE...SSS--S-EEEEEE-TTS-EEEEEE.--HHHHHHHHHHHHHHHHHS-.............................. CS
      CPSF_A  223 efhlgeivtslrkgslvp..geaesssspqllyatldGsigllvPliseeeyrrlqaLqqqLrkelk.............................. 287 
                  +f++++i+  +   +l++  +  +   +p ++y+tl+Gsig+l+Pl+s++++  l++++++L+++                                
  CCD24452.1 1256 HFFINDIILNF---HLIEniN-WS--DRPTIIYTTLQGSIGCLIPLLSKSQIIILKQIEKKLSNVDTilndhneddeitndndaereikkknkgtdd 1346
                  ***********...9999532.22..3799******************************************************************* PP

                  .....-SSS--HHHHS---..----.---EEHHHHHHHH CS
      CPSF_A  288 .....hlgGldhrafRsyyspkseevkgviDgdllerfl 321 
                       +++G+dh+++R+yy+p    v++viDgdl+e f+
  CCD24452.1 1347 efimySIVGRDHSKYRGYYTP----VRNVIDGDLCETFS 1381
                  *********************....************96 PP

>> MMS1_N  Mono-functional DNA-alkylating methyl methanesulfonate N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8  23.0   2.4e-51   2.2e-47       2     478 ..     104     648 ..     103     662 .. 0.80
   2 !    3.9   1.0    0.0019        17     260     330 ..     695     766 ..     667     770 .. 0.73
   3 ?   -1.6   0.4     0.085   7.6e+02      87     164 ..    1073    1164 ..     980    1216 .. 0.65

  Alignments for each domain:
  == domain 1  score: 161.8 bits;  conditional E-value: 2.4e-51
      MMS1_N   2 lLvvgsdsgelvfl.......synpekn.....qfetvhshetlgksgsrrsqpGqylavDPkgraiavsayekvflvyslkkkeilnrealll.sspl 87 
                 ++v+++d g+ +++       +     n      ++t+    ++ +sg+rr +p q+l +   +  i++sa+ek +l+++l  ++  +++ + + sspl
  CCD24452.1 104 FIVITTDNGDFSIIklslqnnN-----NnnnnyNIKTIL-NYQFTRSGIRRLSPIQFLEINDDSLTIILSALEKNKLIFNLTYSK-NDSSLQIMdSSPL 195
                 69************88764322.....234567999999.99*************************************998843.3334444469*** PP

      MMS1_N  88 earksegvilsmvFldpgykeedn............piialle.qdrrgkteltlyewdlglnlvrkisktsepkknldsganlLiplpk.....p... 165
                 e+ ks+ + + +  ++ ++++ +n            p++a +e  + ++  +l++y +dl+lnl+ k+++ +      d+  n+L +lp+         
  CCD24452.1 196 EIIKSNFITMILINCYNKNNNISNivsshhyhhkenPFFASIEiDTITNDFFLIFYMIDLNLNLIIKKNQLK----LSDKNINFLCSLPNdlittTnkn 290
                 *96666655555555555554442333444444444*******53345579****************66543....358899********666550566 PP

      MMS1_N 166 ..........gg.vlVcgetiitykdildqedirkkswarPrrekatn...........fv...aweklds.fffllatedGdLylleiekdedsgkvv 238
                           +  vl   +++i++kd +++ +i+    ++P +++ +            ++     + +d+ + +ll++ +GdL++l++  ++     +
  CCD24452.1 291 nntkvdtplpSPlVLLGFNDYILIKDLNNHYNIKL---DIPNNNNLSLkknypttiingIIqklNSKDNDNsYLILLQSNNGDLFKLNF--NS----LK 380
                 66677776754469999999*******88887998...9**9997777999999976654476555555559*****************..33....47 PP

      MMS1_N 239 tsislkyfdtvsvasalvilksgfLfvasefGdgqlyqieargedd....................knleliqtldNlaPilDfkvvkesdlasegqdq 317
                 ++ +l+yfd ++ a++l i+k+g Lfv  ef+++ l+q+e+++ ++                    +n +     +Nl+Pi+  +     + +++ +  
  CCD24452.1 381 NNFKLSYFDSIPMAQSLNIFKNGLLFVNNEFNNNYLLQFENINTTEsihnseednfyklnnliipsSNNNNNNIQKNLNPIISSSYS---HSQNNTNID 476
                 9*****************************************8777********************6666677779*********99...655555566 PP

      MMS1_N 318 iytcsGagkrgsLrelRsGieveelavseepgspitgvWtlklssede..yddylvlSfvneTlvlsidgdgeveevt..e.dsglllsvpTLaagnlg 411
                 ++     + +++L  l ++i+  ++ +s++p + ++++W+l+l+ ++   y+d+l+l+f n+ ++l+i+ d ++e+++  + +  +  +  TL+++ lg
  CCD24452.1 477 LWIN---SMNSKLFNLTNSINFIDIINSNLPPN-VKNLWSLSLHPKTVshYHDILFLAFNNSMIILKIKPD-SMENLSfkHtNPFIMKNDCTLLIKKLG 570
                 6664...46799****************9**66.7********8885555******************998.99****965455**************9 PP

      MMS1_N 412 dgslvQVtpngi....rliradk......rvsewkppngksiiaaaangeqllvalsgrelvyfel.d.lieevekkdl 478
                  + ++QV++n++      i+ ++        s w pp g +ii   a ++ql++als++e++yf+l d   ++++++++
  CCD24452.1 571 -NLIIQVCKNQFkqitFSIEEKNddynfvEKSVWYPPAGIHIIHSIATNSQLILALSNNEIIYFQLyDtTTTTNNNNNI 648
                 .7**********5544223333367888766689999999**************************5443333333333 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0019
      MMS1_N 260 sgfLfvasefGdgqlyqieargeddknleliqtldNlaPilDfkvvkesdlasegqdqi...ytcs.GagkrgsL 330
                 s++L++a + +   ++ ++  ++d+  le+++  + +aPi D k ++++  ++++++qi   +t++ G++ ++++
  CCD24452.1 695 SDYLAIALDNSTINILSLKRNNQDE-FLEVVSLQNTMAPINDLKLISNN--YNNSNKQInlhVTLTnGVYMNSKI 766
                 5678888888888888898887776.9*******************333..344444442255555566666655 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.085
      MMS1_N   87 learksegvilsmvFldpgykeed.npiialle.qdrrgkteltlyewdlglnlvrkisktsepkk.............nldsganlLiplpk 164 
                  l++++ + +i+ mv ++     ++ n  i+l + +++  k+ +t+++ +l+ ++++ki+++  + +             + ds +n  ipl  
  CCD24452.1 1073 LHETLISDHIYTMVEFNQMILLSSlNNLILLNLgKKQLLKKSITIISKKLSIKKIVKITQWNNE-RiavgelnesvtffQFDSLTNSFIPLAD 1164
                  3444444444444433322222223333333332444446777777777777777777777554.3466666666666666666667777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1526  (0.0851135); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.28s 00:00:01.24 Elapsed: 00:00:00.44
# Mc/sec: 9777.51
//
Query:       CCD24453.1  [L=300]
Description: hypothetical protein NDAI_0D01390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.7e-37  127.3   0.0    9.7e-37  126.7   0.0    1.2  1  Suc_Fer-like  Sucrase/ferredoxin-like
  ------ inclusion threshold ------
      0.091   13.1   0.1       0.19   12.1   0.1    1.5  1  GST_N         Glutathione S-transferase, N-terminal domain
       0.58   10.2   5.5      0.067   13.2   0.9    1.8  2  gp32          gp32 DNA binding protein like


Domain annotation for each model (and alignments):
>> Suc_Fer-like  Sucrase/ferredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.0   1.6e-40   9.7e-37       3     195 .]      70     294 ..      69     294 .. 0.85

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 1.6e-40
  Suc_Fer-like   3 gtvkayskhvlvatgk....sdWpskvedekg....slaealkklk........lllsasslp.......eekseeekttvlllPdfklveevtpss 76 
                   g ++ay++hvl+ ++      +W s+++ +      +++++l++          +l++a+sl+       + +++e+  +vl+lPd+k++ ++++++
    CCD24453.1  70 GLIPAYNRHVLLISPIgvsgFQWCSNLKMDGLswpfNVIKQLQDSFrfenegndILINAISLQnhtwgelKLSKNENICHVLVLPDYKIY-KIKKDK 165
                   66889******9999444459999997766445777888888886269********************99656789999*********99.778777 PP

  Suc_Fer-like  77 veelvkeflkp..............kvrklpekaliLvCshktrDarCgilapllrkelerelrekederpggvrvgfisHvGGHkfAgnviiyrke 159
                   ve  v++f++               + ++   k +i++C+h++rD+rCgi+++ l   +e+ + +       + +++ isH+GGHk+Agnvi+y + 
    CCD24453.1 166 VE--VDKFIQFlkckpndnmpvlwkNYEE-CLKDWIFICGHQQRDERCGIIGHELVPLFEKYYGD-------KKNIAIISHIGGHKYAGNVIYYNQI 252
                   77..5555553334578889988854344.4467*****************************98.......689********************99 PP

  Suc_Fer-like 160 k.......agqgiwygrvepedvegiveetilkgkvvkellRg 195
                   k        ++++w+g+v p ++++++++ ++++k++kel+Rg
    CCD24453.1 253 KnddknkeLADCLWFGKVLPPNLKTLCDS-LENKKIIKELYRG 294
                   999**99989******************9.8899********9 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.2e-05      0.19      28      71 ..     156     201 ..     142     203 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.2e-05
                 EEEEEECSTTTCGGC.HHHHHHCTTS-SSEEEET.TEEEESHHHHH CS
       GST_N  28 yevvpldfeageeks.pellklnplgkvPaLedn.gkkltESraIl 71 
                 y++ +++ ++ e ++  ++lk +p+ ++P+L+ n + +l    +I+
  CCD24453.1 156 YKIYKIKKDKVEVDKfIQFLKCKPNDNMPVLWKNyEECLKDWIFIC 201
                 444444444444444589****************999997666665 PP

>> gp32  gp32 DNA binding protein like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3      0.45   2.7e+03      55      66 ..      47      58 ..      33      62 .. 0.75
   2 ?   13.2   0.9   1.1e-05     0.067      45     118 ..     197     271 ..     152     298 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.45
                .T-HHHHHHTTH CS
        gp32 55 epCplceaakel 66
                ++C lc+++++l
  CCD24453.1 47 NECKLCDKENKL 58
                5699**998877 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.1e-05
                 -.........T.T-HHHH.HHTTHHH..H..-HHHHHHHS-E..E.EEEEEEEEEE-T.T-GGGTT-EEEEEE-HHH CS
        gp32  45 l.yiCekkthdepCplce.aakellaeaktgdeklekvlkkrksktrYlvnilvvkdp.adpenegkvfllefgktv 118
                   +iC +++ de+C +   +  +l++++  gd+k+++ + +     +Y  n++  ++  +d +n++ +  l fgk +
  CCD24453.1 197 WiFICGHQQRDERCGIIGhELVPLFEKYY-GDKKNIAIISHI-GGHKYAGNVIYYNQIkNDDKNKELADCLWFGKVL 271
                 25*************9883578999*998.************.778*******976643555566656666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2377.57
//
Query:       CCD24454.1  [L=444]
Description: hypothetical protein NDAI_0D01400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-08   33.3   0.0      1e-07   32.8   0.0    1.2  1  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.39   10.7   0.0    1.8  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.1e-11     1e-07       1     116 [.      18     146 ..      18     150 .. 0.93

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 1.1e-11
                   EEEEEETTSHH....HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE...EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-... CS
  GFO_IDH_MocA   1 lrvaiiGaGki....gskhlrplnesqrleevvalldpdaeraeavaesfgve...aysdleelladpeidavivatpngtheelakaaleagk... 87 
                   +rv++iG+  +     + h +++ + +++ +++al++pd   a    ++++++   ays le  +++ ++d+++  +  ++ +e  + +le  k   
    CCD24454.1  18 IRVGFIGLSSFkgwaIKTHYPAILQLSSQFQITALYNPDIGTALSTIRTLKLSnatAYSTLESFASSANVDMIVLSIQVSKNFETLIPLLEYSKtnp 114
                   699****98887777899999*************************8888888888************************************99999 PP

                   ...EEEEESSS-SSHHHHHHHHHHHHHHTS-E CS
  GFO_IDH_MocA  88 ...hvllEKPlattveeakelvelaekkgklv 116
                       +++E  la +v+ea+ ++++a+++g + 
    CCD24454.1 115 nlkYLFVEWALACSVQEAETIYKMAAERGLQT 146
                   9999************************9875 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.4e-05      0.39       1      64 [.     162     228 ..     162     247 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.4e-05
                     HHHHHTTTTSSEEEEEEEEECBEEECHHHHCCGGSH....HCSTSHHHHTCHHHHHHHHHHHTSEEEE CS
  GFO_IDH_MocA_C   1 KelIengklGevvsvdvwtldtragaeakkrwkrrk....kksgGvlgdlgiHdiDllqwLfGqppsv 64 
                     KelI +g +G+++s+++   + ++g+e+   +  ++     k+  ++++   H+iDllq+ +G+  s+
      CCD24454.1 162 KELIHEGYIGDINSIEIAGNGGWYGYERLQKSP-SYiyelGKGVDLVTTAFGHTIDLLQYMTGSYFSR 228
                     9**************999999999888777666.455886677788888889***********97765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 3279.28
//
Query:       CCD24455.1  [L=310]
Description: hypothetical protein NDAI_0D01410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-39  133.4  13.5    1.2e-38  132.9  13.5    1.2  1  SUR7      SUR7/PalI family
     0.0011   18.9   6.0     0.0016   18.4   6.0    1.3  1  Fig1      Ca2+ regulator and membrane fusion protein Fig1
  ------ inclusion threshold ------
        1.6    9.1  10.5       0.16   12.4   5.9    1.6  2  DUF805    Protein of unknown function (DUF805)
        3.5    7.8   7.2         15    5.7   6.2    2.1  2  DUF2614   Zinc-ribbon containing domain
        6.3    5.4   9.5        2.3    6.9   6.1    2.0  2  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.9  13.5   3.4e-42   1.2e-38       2     208 ..      10     201 ..       9     203 .. 0.98

  Alignments for each domain:
  == domain 1  score: 132.9 bits;  conditional E-value: 3.4e-42
        SUR7   2 rlillflslaalilllfailgsiknstpltsiylskfdlsgldlaqigladvysfgvwgyCdnsdvnytkCskp.kagypfdpleelnsesngkvdlPs 99 
                 rl+ l++ ++ ++ll+++i+++++++ p+ ++y+++ d+sg+++a    ++ +++++wg C +  +++t+Cs    ++yp++p++++n++ n    +Ps
  CCD24455.1  10 RLLGLLFFAGNTLLLILIIISGTTRHYPVDRFYWVQGDTSGIPNA----PNLTRWTYWGAC-ERLDGVTHCSGNlAPAYPISPVDNFNTKVN----VPS 99 
                 78999****************************************....************.99*********88*****************....*** PP

        SUR7 100 nlrktlsklnnltkalfilhiialvlsfislvvgllaicvspdnsrllsflnlllsvlsflatllaalldtllfvfvrkkinlkefgikaslglkflaf 198
                 ++ ++++++++lt+++f++++ial++  i++++ ++++c     s++++ + ++l ++ f++++ +++l+t++ v++r+++  ++++++as+g + +++
  CCD24455.1 100 KFISNRDAFYYLTRFSFCFFWIALAFIGITFILYIFSWC-----SSIMLKIIFILMIFGFIFNITSVVLQTAASVMARNAF--HDADRSASVGASLMGI 191
                 ***************************************.....999**********************************..**************** PP

        SUR7 199 aWlalaaall 208
                 aW+++ +++l
  CCD24455.1 192 AWASVTLCFL 201
                 ****998876 PP

>> Fig1  Ca2+ regulator and membrane fusion protein Fig1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   6.0   4.4e-07    0.0016      83     179 ..     118     203 ..      59     213 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.4e-07
        Fig1  83 mvaiiLtlllfllllyfplgseipllPfkskavskvalvlsflllllwlvgalwqhvassaastlveeasmgivkskvGkkaealgWfafaflllvc 179
                 ++ i+L+++++ ++ly+        +   s  + k++ +l+++ +++ + ++++q+ as+ a ++  +a  +   ++vG ++++++W+++++ +l +
  CCD24455.1 118 FFWIALAFIGITFILYI--------FSWCSSIMLKIIFILMIFGFIFNITSVVLQTAASVMARNAFHDADRS---ASVGASLMGIAWASVTLCFLEL 203
                 45566666666666663........444555599**************************999999999985...79*************9999843 PP

>> DUF805  Protein of unknown function (DUF805)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.3   8.1e+03      83      95 ..      20      32 ..       7      36 .. 0.52
   2 ?   12.4   5.9   4.5e-05      0.16      13      82 ..     118     192 ..     103     223 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.3
      DUF805 83 lllllvllllpgt 95
                  lll+l+++ gt
  CCD24455.1 20 NTLLLILIIISGT 32
                3344445555554 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 4.5e-05
      DUF805  13 fwwfvlfllllvivlallaavlaa.....aavasalsvvlallllvps..lavtvRR.lHDtgrsgwllllllvplia 82 
                 f+w++l+ + ++++l +++ +  +     + + +++++++ +  +v++  ++v++R  +HD +rs+ + + +l+  ia
  CCD24455.1 118 FFWIALAFIGITFILYIFSWCS-SimlkiIFILMIFGFIFNITSVVLQtaASVMARNaFHDADRSASVGA-SLMG-IA 192
                 3355555555555544443332.233333444444444444444444476777777558******99533.2222.22 PP

>> DUF2614  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.16   5.8e+02      26      46 ..      12      33 ..       4      80 .. 0.68
   2 ?    5.7   6.2    0.0043        15      13      61 ..     120     170 ..     114     180 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.16
     DUF2614 26 ig.llfkeselllvlflllGll 46
                +g l+f  ++lll+l+++ G+ 
  CCD24455.1 12 LGlLFFAGNTLLLILIIISGTT 33
                4524566666666666666665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0043
     DUF2614  13 alllvfigli.vmyigllfkesel.llvlflllGlllvlastvvyfwiGll 61 
                  + l fig+  ++yi  + +++ l ++ +++++G+++ ++s+v+     ++
  CCD24455.1 120 WIALAFIGITfILYIFSWCSSIMLkIIFILMIFGFIFNITSVVLQTAASVM 170
                 567888888537788766666554377899***********9997766655 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.14   4.9e+02     211     250 ..      12      43 ..       2      54 .. 0.51
   2 ?    6.9   6.1   0.00064       2.3     380     434 ..     113     159 ..      86     212 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.14
     DUF2207 211 llilllilllllllllliklllwkkygrepkvkevdpeYe 250
                 l +ll ++   lll+l+i       +g  + +++ d++Y+
  CCD24455.1  12 L-GLLFFAGNTLLLILIII------SGTTRHYPV-DRFYW 43 
                 2.22222222222222222......677777776.77777 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00064
     DUF2207 380 lkklsalglgliilglilillallllvlllvfllilllillliaiivlllfsrll 434
                 ++++++++++l+++g+ +il++       +++++ ++l +++i++i+ ++f  ++
  CCD24455.1 113 RFSFCFFWIALAFIGITFILYI-------FSWCSSIMLKIIFILMIFGFIFN-IT 159
                 3455555555555555555555.......55555555555555555555542.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2185.69
//
Query:       CCD24456.1  [L=217]
Description: hypothetical protein NDAI_0D01420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-44  151.4   0.1    2.5e-44  151.2   0.1    1.0  1  Thymidylate_kin  Thymidylate kinase
  ------ inclusion threshold ------
      0.018   14.5   1.3        0.2   11.1   1.3    2.3  1  KTI12            Chromatin associated protein KTI12
      0.098   13.2   0.0       0.24   12.0   0.0    1.7  2  AAA_18           AAA domain


Domain annotation for each model (and alignments):
>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.2   0.1   4.2e-48   2.5e-44       1     185 []       9     196 ..       9     196 .. 0.90

  Alignments for each domain:
  == domain 1  score: 151.2 bits;  conditional E-value: 4.2e-48
                      EEESTTSSHHHHHHHHHHHHHHTTE.EEEESSSTTSHHHHHHHHHHH.TCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEES-HHHHH CS
  Thymidylate_kin   1 iEGlDGaGKttqaellkerlkeegikvvltrepggteiGekirelll.keeeleeqteallfaadriehleekikpalkqgktvivdRylfSsl 93 
                      +EGlD++GKttq+ ll ++l+++  k ++++++++t+iG++i+++l+ ke  l +q+++llf+a+r ++++++ik+ l +gk+vi+dRy++S++
       CCD24456.1   9 VEGLDRTGKTTQTTLLLKKLSSQDAK-LIKFPDRTTPIGKLIDNYLTdKEFHLPDQAVHLLFSANR-WEVADSIKQLLLEGKIVILDRYVYSGI 100
                      7***********************87.********************9999***************.*************************** PP

                      HHHHTTTTTTCHHHHHHGGGTTS.E-SEEEEEESSHHHHHTSCCTTSSTTTSHHHHHHHHHHHHHHHHHHHH...TTSTEEEEETTS-.HHHHH CS
  Thymidylate_kin  94 aYqgakegvdldlvlslnedvll.kPdltflldvdpevalkRlakrdeldeeeeeqldflrkvrerylelak...ederiliidasks.ieevh 182
                      aY++ak+  ++dl ++l++d +l kPdlt++l  d ++   + ++++e++e++++q+++ +++ +++ el     e e+++i++ +++ i +v+
       CCD24456.1 101 AYSAAKNIPGMDLKWCLQPDKGLlKPDLTIFLTNDNDND-DKKGFGEERYENVQFQKEVKNQFIKVFSELDSidkESETLKIVNVTNKsIIQVE 193
                      *******99************99**********666555.566677777****************99998544145566777766665599999 PP

                      HHH CS
  Thymidylate_kin 183 eeI 185
                      eeI
       CCD24456.1 194 EEI 196
                      987 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.3   3.3e-05       0.2       3     154 ..       6     183 ..       5     214 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.3e-05
                 EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH.........TTSSS-.-GGGH....HHHHHHHHHHHHHHHTT.SEEEE-S---SHHHHHH CS
       KTI12   3 LvvltGlPssGKstrakeLakaleeekrsvvviddeslg........iekdsyk.dsake....kalRsslrsavkrdLskekvVIvDslnyikgfRYe 88 
                 L+++ Gl  +GK+t +  L k+l++++ + +   d +          ++ ++++   ++      a R ++  ++k+ L + k+VI+D   y  g  Y 
  CCD24456.1   6 LILVEGLDRTGKTTQTTLLLKKLSSQDAKLIKFPDRTTPigklidnyLTDKEFHlPDQAVhllfSANRWEVADSIKQLLLEGKIVILDRYVYS-GIAYS 103
                 99***********************6666666666665544444444333333312222211114668899999999999********98884.55443 PP

                 HHHHHHHTT-EEEEEEEE--..................HHHHHHHHHHTT-S..S-HHHHHHHHHH---TTSS-GGGS-SEEEE CS
       KTI12  89 Lyciakaakttlcvvyvvap..................ldvlvkwneereekeeyekelldaLiqRyeePdsknrWDsPlftvl 154
                    +ak++   + +  ++ p                  +d    + eer e+ +++ke+ ++ i+ + e ds  +  + l  v 
  CCD24456.1 104 ---AAKNIPG-MDLKWCLQPdkgllkpdltifltndndNDDKKGFGEERYENVQFQKEVKNQFIKVFSELDSIDKESETLKIVN 183
                 ...3333322.2233333333333443333333333333333444466666666777777777777777776666555555555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     4e-05      0.24       1      80 [.       7      93 ..       7     138 .. 0.70
   2 ?   -1.3   0.0      0.51   3.1e+03      40      69 ..     147     174 ..     127     196 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf...............gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvid 80
                Il+ G  ++GKtt +  L k+l +               g  +  ++++++  l++++   +    ++++    + d +++    l egk +++d
  CCD24456.1  7 ILVEGLDRTGKTTQTTLLLKKLSSqdaklikfpdrttpiGKLIDNYLTDKEFHLPDQAV--HLLFSANRWE---VADSIKQL---LLEGKIVILD 93
                99****************88885567777777887777766666677666666666666..3333333333...44444443...2345555555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.51
      AAA_18  40 evdpealdeskrldedkldklldaleenss 69 
                 e+ ++   +++++++++  k++++l+ +++
  CCD24456.1 147 ERYEN--VQFQKEVKNQFIKVFSELDSIDK 174
                 33333..34444444555566666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1543.34
//
Query:       CCD24457.1  [L=160]
Description: hypothetical protein NDAI_0D01430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-49  165.3   3.6    1.1e-47  161.6   3.6    1.9  1  Clat_adaptor_s  Clathrin adaptor complex small chain


Domain annotation for each model (and alignments):
>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6   3.6     6e-52   1.1e-47       2     141 ..       3     159 ..       2     160 .] 0.88

  Alignments for each domain:
  == domain 1  score: 161.6 bits;  conditional E-value: 6e-52
                     EEEEEEE-TTS-EEEEEESSSS............-CHHH...HHHHHHHHHHHHTT-SSS.-SEEEETT.EEEEEEEETTEEEEEEEETTS-HHH CS
  Clat_adaptor_s   2 ikaililnkkgkvrlakfytav............ddkkk...qklieevyelvsaRdskl.sniveled.lkviYkryasLYFvvivdeqeneli 79 
                     i++il++nk+g vrl ++y+ +            +++ +   q+li+++y+l+saRd+k+ sn+ve+++ +k++Y+rya+LYFv+++d q++e+i
      CCD24457.1   3 IQFILCFNKQGVVRLLRWYDMCacngngsggsssNNNDEllpQDLIAQIYRLISARDHKHqSNFVEFSErTKLVYRRYAGLYFVMGIDLQDEEPI 97 
                     99*****************6432233333332211222245699***************999******99************************* PP

                     HHHHHHHHHHHHHHHCTS-SHHHHHHCHHHHHHHHHCCEETTEES---HHHHHHCHHHHHHH CS
  Clat_adaptor_s  80 ilelihlfvesLdkyfgnVceldlvfnfekvylildEivsgGeiletskkevlkrvelldkl 141
                     +l++ihl ve+Ld++fgnVceld+vfnf+k y++ldE++ gGei+e sk+++l+++ +ld+l
      CCD24457.1  98 YLSHIHLVVEVLDAFFGNVCELDIVFNFYKTYMVLDEVFLGGEIQEVSKDMLLEKLGTLDRL 159
                     ********************************************************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1229.54
//
Query:       CCD24458.1  [L=1085]
Description: hypothetical protein NDAI_0D01440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-51  173.0   0.0    1.4e-43  148.5   0.0    2.9  2  AAA              ATPase family associated with various cellul
      1e-20   73.9   0.2    2.9e-20   72.5   0.2    1.8  1  PEX-1N           Peroxisome biogenesis factor 1, N-terminal
    1.7e-08   34.2   0.0    6.6e-08   32.2   0.0    2.0  2  AAA_lid_3        AAA+ lid domain
      5e-08   33.5   0.1      0.025   14.9   0.0    3.6  3  AAA_16           AAA ATPase domain
    1.9e-06   27.9   0.3      0.075   12.9   0.0    3.8  3  NACHT            NACHT domain
    2.4e-06   27.6   0.3      0.063   13.3   0.0    3.3  3  AAA_14           AAA domain
    5.2e-05   22.6   0.7      0.056   12.6   0.0    3.3  3  TIP49            TIP49 P-loop domain
    0.00023   20.9   0.0     0.0034   17.1   0.0    2.8  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00029   21.1   3.2        1.3    9.3   0.1    4.6  4  AAA_22           AAA domain
     0.0007   20.1   7.6      0.063   13.8   0.0    3.8  3  AAA_18           AAA domain
    0.00081   19.6   0.0      0.042   14.0   0.0    2.7  2  AAA_33           AAA domain
    0.00086   19.1   0.1       0.71    9.6   0.0    2.7  2  AAA_24           AAA domain
     0.0011   18.3   0.0        1.5    8.0   0.0    2.7  2  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0011   18.9   0.0       0.14   12.2   0.0    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0023   18.0   0.0       0.45   10.5   0.0    3.2  2  AAA_5            AAA domain (dynein-related subfamily)
     0.0024   18.0   0.0     0.0084   16.2   0.0    2.0  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0026   18.1   0.0       0.34   11.3   0.0    3.2  2  RNA_helicase     RNA helicase
     0.0048   16.7   0.0       0.74    9.5   0.0    2.6  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0056   16.3   0.1       0.68    9.5   0.1    3.0  3  AAA_25           AAA domain
     0.0079   16.0   0.0       0.25   11.0   0.0    2.4  2  IstB_IS21        IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.015   15.8   2.4       0.28   11.6   0.0    3.1  2  AAA_17           AAA domain
      0.018   15.5   0.2        9.8    6.7   0.0    3.5  3  ABC_tran         ABC transporter
      0.031   13.5   2.3        3.2    6.9   0.0    3.1  2  NB-ARC           NB-ARC domain
      0.058   13.3   0.1        4.4    7.2   0.0    2.8  2  NTPase_1         NTPase
      0.066   13.5   0.0       0.92    9.7   0.0    2.4  2  AAA_28           AAA domain
      0.074   12.3   0.1        2.8    7.1   0.0    2.6  3  Zeta_toxin       Zeta toxin
       0.11   12.7   0.2       0.52   10.5   0.1    2.2  1  Skp1             Skp1 family, dimerisation domain
       0.12   12.2   0.0       0.34   10.8   0.0    1.8  1  AAA_3            ATPase family associated with various cellul
       0.13   11.6   0.0        0.6    9.5   0.0    2.0  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
       0.14   11.2   0.0        1.2    8.1   0.0    2.2  2  T2SSE            Type II/IV secretion system protein
          2    8.1   4.7       0.57    9.9   0.1    2.5  3  ATP_bind_1       Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   4.9e-07   0.00028       2     101 ..     473     586 ..     472     610 .. 0.78
   2 !  148.5   0.0   2.4e-46   1.4e-43       1     128 [.     764     890 ..     764     893 .. 0.97

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 4.9e-07
                 EEESSTTSSHHHHHHHHHHHHT.....HEEEEEETTTCSSS.STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.........TTCCCHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelg.....vefleisgsellsk.yvgesekkirelfkeakekakpsilfiDEidalaksr.........sgseseeeerv 85 
                 ++ G  G GKT+l   + k+l+      ++  i++ ++++   + +++  ++e+++++  +  psil++D++d l++++          +++++ ++++
  CCD24458.1 473 IVEGRQGSGKTSLLLNIWKTLSsspypYYVKYIDCETITDVfSFDNMKTMLNECISSLYWHY-PSILILDNADYLFTESltdeqqqgkINNNNSISSKL 570
                 7889****************975555566899999999965467778888888888888887.****************99888766555677777888 PP

                 HHHHHHHHHHTTTSSS CS
         AAA  86 vnqLlteldgvkkkes 101
                  + L++ +d+ ++k+ 
  CCD24458.1 571 TANLINIVDNISNKRP 586
                 8888888888888743 PP

  == domain 2  score: 148.5 bits;  conditional E-value: 2.4e-46
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +llyG pG+GKTlla+a+a+++g +f++++g+e+l+ky+g+se+++relf++a++ + p+ilf+DE+d++a++r ++++++++rvvnqLlt++dg +  
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQCGLNFISVKGPEILNKYIGASEQNVRELFERAQSVQ-PCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQMDGAEGL 861
                 69****************************************************998.****************999*********************8 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEE CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrki 128
                 e+ v +++at rpd +dpallr gR+d+ +
  CCD24458.1 862 EG-VYILAATSRPDLIDPALLRpGRLDKSV 890
                 77.************************976 PP

>> PEX-1N  Peroxisome biogenesis factor 1, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.2     5e-23   2.9e-20       4      77 .]     112     184 ..     109     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 5e-23
      PEX-1N   4 evePltsdDwEiielhaefleenlLsQvravspgqvltvwlspttvakfkvtslepatskfvkLspdteviVaP 77 
                  +eP tsdDwEiie +  fl+++++ Q+r+++ + v+++++ + +vakf+v++++p++ +++k+s +t +iV+P
  CCD24458.1 112 LIEPCTSDDWEIIENNVPFLQDQIIYQTRVMTLNSVIICYV-GDIVAKFQVKKISPENLDVGKISAGTMIIVEP 184
                 59***************************************.9*****************************99 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0         6   3.5e+03       1      23 [.     651     673 ..     651     675 .. 0.81
   2 !   32.2   0.0   1.1e-10   6.6e-08       1      35 [.     922     956 ..     922     967 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 6
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalc 23 
                 d++l++   + eGyS  D++ l+
  CCD24458.1 651 DLNLNDMSLEIEGYSILDIEKLI 673
                 677888888889***99999887 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 1.1e-10
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgi 35 
                 d dlk+++++T GySGADl+ lc++A l A+ r +
  CCD24458.1 922 DTDLKAVVQATVGYSGADLQGLCYNAYLKAVHRYL 956
                 78*****************************9965 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00054      0.32       3      61 ..     449     505 ..     447     586 .. 0.73
   2 !   14.9   0.0   4.4e-05     0.025      25      49 ..     762     786 ..     748     800 .. 0.80
   3 ?    2.1   0.0      0.39   2.2e+02     123     147 ..     809     832 ..     795     855 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00054
      AAA_16   3 vGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcd 61 
                 vG ++ ++++  +l     ++ + +++ G +G+GK+sl+  + + l+ +  +  + k+ 
  CCD24458.1 449 VGMDNTIDEIVKYLTIPILPS-PGIIVEGRQGSGKTSLLLNIWKTLSSS-PYPYYVKYI 505
                 677788888888888666666.6888*************7777777777.333333333 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 4.4e-05
      AAA_16  25 elvllsGesGvGKsslvrellrale 49 
                 + +ll+G++G+GK+ l+ +++++  
  CCD24458.1 762 SGILLYGYPGCGKTLLASAIAQQCG 786
                 689***************9998755 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.39
      AAA_16 123 lkrllallsrderplvlvlDdlqwa 147
                 +++l++++++  +p +l++D+++ +
  CCD24458.1 809 VRELFERAQS-VQPCILFFDEFDSI 832
                 6778889999.778********965 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00013     0.075       3      48 ..     472     513 ..     471     592 .. 0.80
   2 !    8.9   0.1    0.0023       1.3       3      23 ..     764     784 ..     762     788 .. 0.90
   3 ?    0.8   0.0      0.72   4.2e+02      63     115 ..     803     854 ..     795     876 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00013
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrs 48 
                 +i++G++GsGKT Ll  +  ++ ++ +p     +v ++ + ++++ 
  CCD24458.1 472 IIVEGRQGSGKTSLLLNIWKTLSSSPYPY----YVKYIDCETITDV 513
                 79*******************99988776....6666677666665 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0023
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 ++l G +G+GKT L+  +a++
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQ 784
                 7899**************986 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.72
                 TS--SSS-CCHHHHCCSCCCEE...EEEE-STT-SS-TCH.........HHHHHCT CS
       NACHT  63 pepaapvsevwavllelperlL...lilDglDelvtdlgqkekqpvrtlLselirk 115
                  +++++v+e    l e+++++    l +D +D ++ + g++    ++++ ++l+++
  CCD24458.1 803 GASEQNVRE----LFERAQSVQpciLFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQ 854
                 566777777....55555544444488********999996666666666666554 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       7.9   4.6e+03      29      79 ..     263     312 ..     252     328 .. 0.60
   2 !   13.3   0.0   0.00011     0.063       5      75 ..     472     545 ..     469     597 .. 0.75
   3 !   10.4   0.0   0.00085      0.49       5      75 ..     764     831 ..     761     857 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 7.9
      AAA_14  29 kkesilyinldderdkkladpekllelilek..lkeekktylflDEiqevpew 79 
                 +ke+   +++ d+r++k   ++   ++i +   ++ ++k+ ++ D i  ++++
  CCD24458.1 263 TKEKQKKLDFHDDRNEKPMSFN--KKIIVKIkrFE-KRKHTIMKDHILLSDSL 312
                 4566677788888887755553..34444432233.46666766666655555 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.00011
      AAA_14   5 lvitGaRrvGKTtllkqlikell..vkkesilyinldderdkkladpekllelileklke...ekktylflDEiqe 75 
                 ++++G   +GKT ll ++ k+l     +  + yi++++ +d  + d+  + +++ e +++   +  ++l+lD + +
  CCD24458.1 472 IIVEGRQGSGKTSLLLNIWKTLSssPYPYYVKYIDCETITDVFSFDN--MKTMLNECISSlywHYPSILILDNADY 545
                 799****************9999876678889999999988543332..333333333333346789999998766 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00085
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqe 75 
                 +++ G   +GKT l+  ++++      +++ ++  +  +k +  +e++ ++++e++++ +  +lf+DE   
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQCG---LNFISVKGPEILNKYIGASEQNVRELFERAQSVQPCILFFDEFDS 831
                 67889999*******99998877...7888888888777777766677777777755568899*****876 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.4      0.53   3.1e+02      90     161 ..     201     275 ..     169     292 .. 0.72
   2 ?    5.2   0.0     0.017        10      52      77 ..     471     496 ..     457     527 .. 0.75
   3 !   12.6   0.0   9.8e-05     0.056      52      98 ..     763     807 ..     759     820 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.53
                 XXXXXXXXXXXXXXXXXXXXXXXX-S-EEEEEEEEEEE......-SSS-..TTS--EEEEEE-SS-EEEEEE-HH CS
       TIP49  90 slevkktevltqalrksigvrikeekevleGevvelevee...aenplskekkikevkitlktakeekklklgsk 161
                  ++ +   ++ q++ +s++  i++   + +  vv ++ ++    ++++   +  ++   ++kt++++kkl+ +  
  CCD24458.1 201 NNDGEHDIIIKQKILRSLQWNIQDDCALEDDIVVWIDQNDdkiLDCKYAFVSVLHNKLEIMKTKEKQKKLDFHDD 275
                 555556668899999999999999999999999999886422234444444455555567899999999998865 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.017
                 XXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelged 77 
                 ++++ G +g+Gkt+l + i k l+++
  CCD24458.1 471 GIIVEGRQGSGKTSLLLNIWKTLSSS 496
                 799********************954 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 9.8e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktev 98 
                 ++Ll G +g Gkt la ai+++ g  + f++++g e+    +  +e 
  CCD24458.1 763 GILLYGYPGCGKTLLASAIAQQCG--LNFISVKGPEILNKYIGASEQ 807
                 79********************99..99*********9988877764 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   5.9e-06    0.0034      36      70 ..     764     798 ..     759     835 .. 0.83
   2 ?   -0.6   0.0       1.7   9.7e+02      11      58 ..     853     900 ..     845     927 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 5.9e-06
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvle 70 
                 +llyG PG Gkt la+ ia++ g ++ +  gP + 
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQCGLNFISVKGPEIL 798
                 8*******************************874 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.7
      RuvB_N  11 gqekvkeklk.ifieaakkreealdhvllyGpPGlGkttlakiiakelg 58 
                  q +  e l+ ++i aa +r + +d  ll  p  l k+ l++i  +e  
  CCD24458.1 853 TQMDGAEGLEgVYILAATSRPDLIDPALLR-PGRLDKSVLCNIPNEEDR 900
                 555555556448999**********99985.667999999999777655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.031        18       9      31 ..     473     495 ..     470     584 .. 0.66
   2 !    9.3   0.1    0.0022       1.3       7      29 ..     763     785 ..     759     819 .. 0.74
   3 ?   -1.3   0.0       4.1   2.3e+03      80     116 ..     811     855 ..     796     862 .. 0.63
   4 ?   -1.0   0.0       3.4     2e+03      48      71 ..     983    1014 ..     944    1064 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.031
      AAA_22   9 vvtGesGtGKTtllrrlleqlde 31 
                 +v G  G+GKT ll ++ ++l  
  CCD24458.1 473 IVEGRQGSGKTSLLLNIWKTLSS 495
                 67777777777777777666643 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0022
      AAA_22   7 ilvvtGesGtGKTtllrrlleql 29 
                  ++++G +G+GKT+l+  +++q 
  CCD24458.1 763 GILLYGYPGCGKTLLASAIAQQC 785
                 589*************9999884 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 4.1
      AAA_22  80 ealeqalrarav..ielliiDEaqhlr....s......eealeeLrsll 116
                 e++e+a        + +l  DE++ +     +      ++++++L + +
  CCD24458.1 811 ELFERAQ----SvqPCILFFDEFDSIApkrgHdstgvtDRVVNQLLTQM 855
                 3333333....24557999*****9976544144556677777766655 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 3.4
      AAA_22   48 psst...sskdllrellralglelka.....e 71  
                   +++     kd+l e+  +l+ +l++     +
  CCD24458.1  983 INENvtlANKDILDEINGELQGRLSKekgtdQ 1014
                  44443346778888888888887777333321 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.5       7.5   4.3e+03      26      97 ..     221     287 ..     195     304 .. 0.61
   2 ?    7.4   1.4      0.01         6       1      69 [.     472     583 ..     472     611 .. 0.66
   3 !   13.8   0.0   0.00011     0.063       1      32 [.     764     793 ..     764     858 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 7.5
      AAA_18  26 vnlrdvakenglllevdpe..aldeskrldedkldklldaleenssaleegknlvidghlaeleseaakdikkv 97 
                  +  d a e++++ + d++  +    +  +  ++ +l+++le      e++k   +d h   +e+++ + +k +
  CCD24458.1 221 NIQDDCALEDDIVVWIDQNddK---ILDCKYAFVSVLHNKLEIMKT-KEKQKK--LDFHDDRNEKPMSFNKK-I 287
                 4556677777777777777333...333333344444444444432.333444..66666666665555544.4 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.01
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...........................................gvnlrdvakenglllevdpealdeskrldedk 56 
                 I++ G +G+GKt+l  ++ k l +                                                d+++ + l +e+++ ++++++ +  + 
  CCD24458.1 472 IIVEGRQGSGKTSLLLNIWKTLSSspypyyvkyidcetitdvfsfdnmktmlnecisslywhypsilILDNADYLFTESLTDEQQQGKINNNNSISSKL 570
                 99***************9888844588888888998888888876666555555555555555544444444444444444444444555555555555 PP

      AAA_18  57 ldklldaleenss 69 
                 +++l+++++++s+
  CCD24458.1 571 TANLINIVDNISN 583
                 5555555555554 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 0.00011
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdva 32 
                 Ill G+pG+GKt la ++++ +  g n ++v 
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQC--GLNFISVK 793
                 99******************99..66655543 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.27   1.5e+02       2      21 ..     472     491 ..     472     521 .. 0.87
   2 !   14.0   0.0   7.2e-05     0.042       2      52 ..     764     816 ..     764     878 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.27
      AAA_33   2 vllvGlpGsGKstlaerllk 21 
                 +++ G +GsGK+ l+ ++ k
  CCD24458.1 472 IIVEGRQGSGKTSLLLNIWK 491
                 6899********99877655 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 7.2e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqsktdytrvl 52 
                 +ll G pG+GK+ la  ++++ g  ++ +  +++++++ g  +q+ +++ + +
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQCGlnFISVKGPEILNKYIGASEQNVRELFERA 816
                 6789*******************999999999999988885555555443333 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0012      0.71       5     124 ..     472     588 ..     469     604 .. 0.66
   2 ?    6.6   0.0      0.01       5.9       5      22 ..     764     781 ..     761     796 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0012
      AAA_24   5 iliyGpsgiGKTtlakel.........gpkplfidtekGlksldadkfpdieswedfldevvel..aaeladyktlviDtideleelclaevirqneka 92 
                 i++ G +g+GKT+l++++         ++ + +id+e  ++   +d+++           ++e   +  ++  ++l++D++d l    l + ++q ++ 
  CCD24458.1 472 IIVEGRQGSGKTSLLLNIwktlssspyPYYVKYIDCETITDVFSFDNMK---------TMLNECisSLYWHYPSILILDNADYLFTESLTDEQQQGKI- 560
                 67789*************8888887777777777888855555555544.........4444444333444448999999999977666665555555. PP

      AAA_24  93 eskedkgdgkGygelaeefrrllkklqelrk.n 124
                 ++++++++     +l++ ++++++++++ r   
  CCD24458.1 561 NNNNSISS-----KLTANLINIVDNISNKRPeA 588
                 55555554.....77888888888777766554 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.01
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 il+yG +g GKT la+ +
  CCD24458.1 764 ILLYGYPGCGKTLLASAI 781
                 89************9876 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0026       1.5       4      29 ..     472     497 ..     470     523 .. 0.84
   2 !    7.5   0.0    0.0037       2.2       4      46 ..     764     799 ..     761     844 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0026
     DUF2075   4 vlVtGvaGtGKtvvllnllaeledde 29 
                 ++V+G+ G+GKt +lln+  +l+++ 
  CCD24458.1 472 IIVEGRQGSGKTSLLLNIWKTLSSSP 497
                 79****************99995544 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0037
     DUF2075   4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlv 46 
                 +l  G +G GKt+++++++ ++         +++sv +p++l 
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQC-------GLNFISVKGPEILN 799
                 6789***************999.......44555555555444 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.093        54      21      44 ..     471     494 ..     449     522 .. 0.78
   2 !   12.2   0.0   0.00024      0.14      19      59 ..     761     801 ..     739     812 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.093
                 EEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  21 vilLeGdLGaGKTtlvrglakalg 44 
                  i+ eG  G+GKT l  ++ k+l 
  CCD24458.1 471 GIIVEGRQGSGKTSLLLNIWKTLS 494
                 3899***********999999885 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00024
                 TEEEEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEE CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeY 59 
                 ++ ilL+G  G+GKT l+ ++a+++g++  +vk P   ++++Y
  CCD24458.1 761 RSGILLYGYPGCGKTLLASAIAQQCGLNfiSVKGP--EILNKY 801
                 4459***********************98889988..566666 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0       0.1        58       2      27 ..     472     498 ..     471     512 .. 0.79
   2 !   10.5   0.0   0.00078      0.45       2      32 ..     764     794 ..     763     836 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.1
                 EEEE--SSSSHHHHHHHGGGGB.S--E CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nrev 27 
                 +++ G +G+gK++l   + + l  +++
  CCD24458.1 472 IIVEGRQGSGKTSLLLNIWKTLsSSPY 498
                 7899**********9999888864443 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00078
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvql 32 
                 +lL G pG+gK+ la  +a+  + ++  v +
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQCGLNFISVKG 794
                 89****************9987766666655 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-05    0.0084       5     105 ..     763     857 ..     759     859 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.5e-05
                 -EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS...EEEEETGGG----.---------HHHHHHH CS
       AAA_2   5 silllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpk.essgadvSregVqrdL 99 
                  ill g  g+Gkt+la a+a+   +    ++i +   e+l      +++   +++     +++++    i+++DE d i+pk ++ +  v    V++ L
  CCD24458.1 763 GILLYGYPGCGKTLLASAIAQQCGL----NFISVKGPEILN-----KYIGASEQNVRELFERAQSVqpcILFFDEFDSIAPKrGHDSTGVTDR-VVNQL 851
                 5899999****************98....999999999999.....66666666666666666666788************976777777665.55555 PP

                 HHHHH- CS
       AAA_2 100 Lqileg 105
                 L  ++g
  CCD24458.1 852 LTQMDG 857
                 555565 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.21   1.2e+02       1      24 [.     472     495 ..     472     523 .. 0.83
   2 !   11.3   0.0   0.00059      0.34       1      27 [.     764     793 ..     764     850 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.21
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallk 24 
                   i++ G++g GK++l  ++ k+l++
    CCD24458.1 472 IIVEGRQGSGKTSLLLNIWKTLSS 495
                   6789**********9998888874 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00059
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...k 27 
                   i+lyG +g+GK++la  +a++   ++   k
    CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQCGLNFisvK 793
                   689**************9998774444442 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.05        29       1      21 [.     472     492 ..     472     540 .. 0.87
   2 !    9.5   0.0    0.0013      0.74       3      71 ..     766     829 ..     764     833 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.05
  Viral_helicase1   1 ivvhGvpGcGKStlirkllrt 21 
                      i+v G  G+GK++l+ ++ +t
       CCD24458.1 472 IIVEGRQGSGKTSLLLNIWKT 492
                      6899999***********999 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0013
  Viral_helicase1   3 vhGvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDEy 71 
                        G pGcGK+ l   +++++ l++ +++   e+l++    ++++  + ++ +++  v+++   il++DE+
       CCD24458.1 766 LYGYPGCGKTLLASAIAQQCgLNFISVKG-PEILNKYIGASEQNVRELFERAQS--VQPC---ILFFDEF 829
                      5699*****************88887777.899999874444443333333333..2334...8999986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.21   1.2e+02      36      53 ..     472     489 ..     458     509 .. 0.89
   2 !    9.5   0.1    0.0012      0.68      34      54 ..     762     782 ..     755     788 .. 0.86
   3 ?   -0.4   0.0       1.2     7e+02     128     172 ..     807     851 ..     797     858 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.21
      AAA_25  36 allaGapgtGKttlaldl 53 
                 +++ G++g+GKt l+l++
  CCD24458.1 472 IIVEGRQGSGKTSLLLNI 489
                 5788***********986 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0012
      AAA_25  34 elallaGapgtGKttlaldla 54 
                 + +ll+G pg+GKt la+ +a
  CCD24458.1 762 SGILLYGYPGCGKTLLASAIA 782
                 5589*************9887 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.2
      AAA_25 128 advdaleaaieevegvrlvviDplsralggdensnsdv.galveal 172
                 + v++l +++++v ++  + +D ++++ +   ++++ v +++v++l
  CCD24458.1 807 QNVRELFERAQSV-QPCILFFDEFDSIAPKRGHDSTGVtDRVVNQL 851
                 6789999999997.599*************9999999999999998 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.24   1.4e+02      49     121 ..     471     547 ..     466     560 .. 0.83
   2 !   11.0   0.0   0.00044      0.25      47      71 ..     761     785 ..     757     799 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.24
   IstB_IS21  49 nivllGpsGvGKshlaialgveavr..aglsvlfvrvedLveelkrarrdgklaralkrllkv..dllilDdlgllp 121
                 +i++ G  G GK+ l   + +        + v ++  e +    + ++ +  l++ +++l     ++lilD+  +l 
  CCD24458.1 471 GIIVEGRQGSGKTSLLLNIWKTLSSspYPYYVKYIDCETITDVFSFDNMKTMLNECISSLYWHypSILILDNADYLF 547
                 68999*********9999987766633678999**999999999999999999999999865435999999998864 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00044
   IstB_IS21  47 kenivllGpsGvGKshlaialgvea 71 
                 + +i+l G +G GK+ la a++++ 
  CCD24458.1 761 RSGILLYGYPGCGKTLLASAIAQQC 785
                 56899*****************985 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2      0.33   1.9e+02      11      69 ..     160     226 ..     158     278 .. 0.68
   2 ?   11.6   0.0   0.00049      0.28       1      25 [.     767     791 ..     767     817 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.33
                 HHHHHH.HHHTEEEEEHHHHHHHHHHTTTS.HSS..HHHHC....TSHHHHHHHHHHHHHHHHHHHH CS
      AAA_17  11 qceklv.ekygfthlsaGdllreeakrggl.aka..rdemr....klpleekkelqkeaaekiaeea 69 
                 q++k+  e++++  +saG +++ e k+++  +++  ++ m     + ++ +k+++++ ++ +i++++
  CCD24458.1 160 QVKKISpENLDVGKISAGTMIIVEPKENEIrNQQfkKQSMInndgEHDIIIKQKILRSLQWNIQDDC 226
                 77777767899999********999999874322112334433322344444444444444555544 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00049
                 EE-TTSSHHHHHHHHHHHHTEEEEE CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthls 25 
                 +G PG+GK+ +++ ++++ g+ ++s
  CCD24458.1 767 YGYPGCGKTLLASAIAQQCGLNFIS 791
                 7*******************99998 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1      0.12        69      16      33 ..     474     491 ..     460     497 .. 0.81
   2 ?   -0.6   0.0       2.9   1.7e+03     118     135 ..     526     543 ..     520     600 .. 0.84
   3 ?    6.7   0.0     0.017       9.8      14      64 ..     764     812 ..     757     860 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.12
                 EEESTTSSHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllag 33 
                 + G+ G+GK++Ll  + +
  CCD24458.1 474 VEGRQGSGKTSLLLNIWK 491
                 569*********987765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 2.9
                 HHHHHHHHTSSEEEEEST CS
                 xxxxxxxxxxxxxxxxxx RF
    ABC_tran 118 alarallkkpkllllDEp 135
                 ++  + +  p++l+lD++
  CCD24458.1 526 CISSLYWHYPSILILDNA 543
                 677778888888888876 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.017
                 EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  14 vaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvl 64 
                 + + G  G+GK+ L++++a++       i ++g ++ ++ +  ++++++ l
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQCGL--NFISVKGPEILNKYIGASEQNVREL 812
                 6789**************998643..4455555555555555555555555 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.021        12      22      45 ..     471     494 ..     451     534 .. 0.77
   2 ?    6.9   0.0    0.0055       3.2      23      43 ..     764     784 ..     760     789 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.021
                 EEEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnksd 45 
                  + + G+ G+GKt l+ +i + ++
  CCD24458.1 471 GIIVEGRQGSGKTSLLLNIWKTLS 494
                 47899**************99855 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0055
                 EEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  23 valvGmgGvGKttlakqilnk 43 
                 + l+G +G+GKt la+ i ++
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQ 784
                 679*************99876 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0075       4.4       2      28 ..     472     498 ..     471     504 .. 0.90
   2 ?    2.9   0.0      0.16        92       2      32 ..     764     794 ..     763     800 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0075
                 EEEE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgv 28 
                 +++ G++G+GKt l+ ++ ++l+ss +
  CCD24458.1 472 IIVEGRQGSGKTSLLLNIWKTLSSSPY 498
                 7899******************98765 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.16
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgG 32 
                 +++ G pG GKt l + +++++  + ++v+G
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQCGLNFISVKG 794
                 67889**************999665556655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.9   5.2e+02       2      18 ..     472     488 ..     471     514 .. 0.82
   2 ?    9.7   0.0    0.0016      0.92       2      35 ..     764     802 ..     763     829 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.9
      AAA_28   2 ivitGgestGKTtllea 18 
                 i++ G +++GKT+ll +
  CCD24458.1 472 IIVEGRQGSGKTSLLLN 488
                 788999********954 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0016
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvv....pEaareil 35 
                 i + G +++GKT l++a+a++ g + +    pE+  +++
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQcGLNFIsvkgPEILNKYI 802
                 7899***************99855544124666666665 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.21   1.2e+02      19      38 ..     472     491 ..     468     498 .. 0.82
   2 ?    7.1   0.0    0.0049       2.8      19      50 ..     764     793 ..     761     808 .. 0.88
   3 ?   -3.0   0.0       6.4   3.7e+03     136     182 ..     947     998 ..     946     999 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.21
  Zeta_toxin  19 illgGqpGAGKselaellkd 38 
                 i++ G +G+GK++l+  + +
  CCD24458.1 472 IIVEGRQGSGKTSLLLNIWK 491
                 6889*********9877655 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0049
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrld 50 
                 ill G pG+GK+ la++++++   + n++ ++
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQC--GLNFISVK 793
                 7899****************98..78888776 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 6.4
  Zeta_toxin 136 SrlgvldRyeeevae.....gRlvpkeehdeafeglresvealeeekqldrv 182
                 ++l++  Ry+ +  e      R+ +   h++   +l ++  +l+++  ld++
  CCD24458.1 947 AYLKAVHRYLSQESEpsqmkKRMNKNAGHINLIFNLINENVTLANKDILDEI 998
                 5678889999994445777569999999999888888877777877777665 PP

>> Skp1  Skp1 family, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1    0.0009      0.52      11      30 ..     577     596 ..     569     598 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0009
        Skp1  11 vAdmikgktpeeiReiFnIe 30 
                 + d i++k+pe iR+iF+++
  CCD24458.1 577 IVDNISNKRPEAIRVIFGVK 596
                 457899************97 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00059      0.34       2      39 ..     764     800 ..     763     875 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00059
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPs 39 
                 +ll g PG +ktll++a+a++ +l+f  ++  p++l  
  CCD24458.1 764 ILLYGYPGCGKTLLASAIAQQCGLNFISVK-GPEILNK 800
                 7999*********************98886.4666654 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.9   1.7e+03      25      44 ..     472     491 ..     460     515 .. 0.81
   2 ?    9.5   0.0     0.001       0.6      25      43 ..     764     782 ..     761     786 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.9
  Mg_chelatase  25 lllvGppGsGKtmlakrlps 44 
                   +++ G  GsGKt l   + +
    CCD24458.1 472 IIVEGRQGSGKTSLLLNIWK 491
                   7899*******988666555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.001
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll+G pG+GKt+la++++
    CCD24458.1 764 ILLYGYPGCGKTLLASAIA 782
                   89*************9986 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0021       1.2      98     153 ..     438     493 ..     337     497 .. 0.74
   2 ?   -0.1   0.0      0.66   3.8e+02     125     152 ..     757     784 ..     733     789 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0021
       T2SSE  98 ksakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkei 153
                 k+  +l++ +++ + ++ ++i + l  ++     i+v G  gsGKt ll  + k++
  CCD24458.1 438 KELTNLKVPKIVGMDNTIDEIVKYLTIPILPSPGIIVEGRQGSGKTSLLLNIWKTL 493
                 4566778888888888889999999*********************9997666655 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.66
       T2SSE 125 avrerglilvsGgTgsGKttllyallke 152
                 ++r r  il+ G  g GKt l+ a+ ++
  CCD24458.1 757 PLRLRSGILLYGYPGCGKTLLASAIAQQ 784
                 6778999**************9998765 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.91   5.3e+02       2      25 ..     475     498 ..     474     502 .. 0.78
   2 ?    9.9   0.1   0.00099      0.57     111     210 ..     486     580 ..     482     604 .. 0.73
   3 ?   -1.9   0.0         4   2.3e+03       2      21 ..     767     786 ..     766     792 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.91
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgr 25 
                  G  GsGKt++  ++ ++l+++ +
  CCD24458.1 475 EGRQGSGKTSLLLNIWKTLSSSPY 498
                 6999*******9998888877755 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00099
  ATP_bind_1 111 lakiveeLesefalvvvyLvDsqrltdptkf..isgllsalsamlrlelPhvvvlnkfDllkeklekeleffedvealslllekeeekykklaeaiael 207
                 l +i ++L+s+  +  v  +D++++td+ +f  ++++l  +   l  + P + +l ++D l ++       ++d +  +  ++++++  +kl++++ ++
  CCD24458.1 486 LLNIWKTLSSSPYPYYVKYIDCETITDVFSFdnMKTMLNECISSLYWHYPSILILDNADYLFTE------SLTDEQ-QQGKINNNNSISSKLTANLINI 577
                 5678899999888889999********6665559**************************8833......333222.2233333345555666666655 PP

  ATP_bind_1 208 lee 210
                 +++
  CCD24458.1 578 VDN 580
                 554 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4
  ATP_bind_1   2 vGpaGsGKttfvgalseile 21 
                  G +G GKt + +a+++ + 
  CCD24458.1 767 YGYPGCGKTLLASAIAQQCG 786
                 599********999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1085 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.42
# Mc/sec: 7676.74
//
Query:       CCD24459.1  [L=722]
Description: hypothetical protein NDAI_0D01450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-37  128.7   0.0      4e-37  128.0   0.0    1.3  1  Pkinase      Protein kinase domain
    1.3e-15   57.5   0.0    2.1e-15   56.7   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
     0.0013   18.1   0.0     0.0022   17.4   0.0    1.3  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
       0.07   12.4   0.0       0.12   11.7   0.0    1.3  1  Kinase-like  Kinase-like
      0.085   13.2   0.7          2    8.8   0.1    2.8  2  ACDC         AP2-coincident C-terminal


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.0   0.0   1.1e-40     4e-37       4     263 ..     230     535 ..     228     536 .. 0.78

  Alignments for each domain:
  == domain 1  score: 128.0 bits;  conditional E-value: 1.1e-40
                 EEEEEEESSEEEEEEEET.TTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEE.........SSEEEEEEE--TTEBHHHHHH CS
     Pkinase   4 leklGeGsfGkVykavek.etgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfee.........kdelylvleyveggeladlle 90 
                  + +G+G+++ V k+v++ ++++i+A+Kk++   ++  ++  k+  +E  i k+l++++ ++++++f+          ++   +++e+++++ l++l++
  CCD24459.1 230 YKLIGSGGSSDVCKVVSTfKKKEIYALKKLNMVYDETPERfyKRCSKEFIISKHLSSSKNIHIVNTFYLlkiatttytTRGWGFIMELCSKD-LFNLIQ 327
                 678***********9986478899*******99888877788**************665555555555556666555344444*******76.9****9 PP

                 ....HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHH........ CS
     Pkinase  91 ....rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk........ltsfvgtseYlAPEvl........ 169
                     r++ lse+    ++kqi+eg++++H++g+ HrDlKpeN+L+ ++g  KitDFG++  ++ +             ++g+  Y +PEv+        
  CCD24459.1 328 ktgwRNVPLSEK--YCLFKQIVEGVKFMHEQGVAHRDLKPENVLLTQDGICKITDFGISDWYHIKPLdfsspvkkCAGMIGSAPYASPEVMmydakkky 424
                 665555555555..5589******************************************99998878999998888999***********99976544 PP

                 ...TTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHH.HHHHHHHTHHHHHHHCTSHH...HHHTTS.....................-HHHHHHHH CS
     Pkinase 170 ...keney.skkvDvWslGvilyelltgkppfsgekgke.kvekeldqlekilkilgetkeklpeasei.....................seeakdllk 242
                     + +y   k D +slG+il++++++  pf ++ +k+ k++k ++  e++++   +++        +                     +  a ++  
  CCD24459.1 425 pesLQIPYdPLKLDSYSLGIILITMVNNIIPFLNSCNKDaKFRKYVTSYENFIRHQ-NST--------FrqkgcykagpgaeytlaknfkNTAASRVAW 514
                 4332356645589*******************966555402333333333222222.112........1223345668999999999998889999999 PP

                 HHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 243 kllkkdpkkRltaeellqhpy 263
                 +l + +p++R+t+e+l+++p+
  CCD24459.1 515 RLADPNPETRYTMEDLVNDPW 535
                 9*******************9 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.0     6e-19   2.1e-15       5     200 ..     231     451 ..     228     483 .. 0.72

  Alignments for each domain:
  == domain 1  score: 56.7 bits;  conditional E-value: 6e-19
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH...HHHHHHHHHHHHTS...-BTTB--EEEEEE......SSSSEEEEEE--TTEBHHH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateee...keelleeakimkkl...khpnivkllgvct......keepllivteyvkgGdLlk 90 
                  k +G+G  ++V++   +    kk++  a+K+l+  ++e+     ++  +e  i k+l   k+ +iv+   +         ++   +++e++++ dL +
   CCD24459.1 231 KLIGSGGSSDVCKVVST---FKKKEIYALKKLNMVYDETPerfYKRCSKEFIISKHLsssKNIHIVNTFYLLKiatttyTTRGWGFIMELCSK-DLFN 324
                  56888888888888777...66677778888876555543122566667877777765114445676544433332444455589******97.8999 PP

                  HHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.....EETTSSTSGGGGS-HHHHHHSE.. CS
  Pkinase_Tyr  91 fLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey.....vkkeeaklpvkWmapEslkekk.. 181
                   ++k+  +++ l++++++  q+ +G+++++++ + Hrdl   NvLl+++ ++ki+DfG+++  + +        +k  +   +  + +pE++++    
   CCD24459.1 325 LIQKTGWRNVPLSEKYCLFKQIVEGVKFMHEQGVAHRDLKPENVLLTQDGICKITDFGISDWYHIKPLDfsspvKKCAGMIGSAPYASPEVMMYDAkk 422
                  ****99******************************************************87644433323332445555677889999998877656 PP

                  ..........EEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 182 ..........ftsksDvWsfGvllwEift 200
                               k D +s G++l+ +++
   CCD24459.1 423 kypeslqipyDPLKLDSYSLGIILITMVN 451
                  66766666633356677777777766665 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   6.2e-07    0.0022     112     155 ..     331     374 ..     319     385 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.2e-07
         Kdo 112 waelaeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 w++++ + k  l+k++   ++ +h+ gv H+dl + n+ll q++
  CCD24459.1 331 WRNVPLSEKYCLFKQIVEGVKFMHEQGVAHRDLKPENVLLTQDG 374
                 55566777788999***************************998 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.4e-05      0.12     110     247 ..     292     453 ..     276     469 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.4e-05
  Kinase-like 110 vvnallllpaasvdl.............eilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft..aLv 192
                  +vn + ll+ a +               + l++++qk   ++ +l +  +  l  q++  +  ++++g+ h +++++n+ll ++g  ++++f+    +
   CCD24459.1 292 IVNTFYLLKIATTTYttrgwgfimelcsKDLFNLIQKTGWRNVPLSE--KYCLFKQIVEGVKFMHEQGVAHRDLKPENVLLTQDGICKITDFGisDWY 387
                  55666555555555555566555544444444444444444444433..445677999999*****************************99621333 PP

  Kinase-like 193 ragtkvvlseve........kgfaPpEllgsrgg..ytrknktkm.thkldaWqlGlviyriwclk 247
                    +     s v+        + +a pE++   ++  y +  +  +   kld + lG+    +    
   CCD24459.1 388 HIKPLDFSSPVKkcagmigsAPYASPEVMMYDAKkkYPESLQIPYdPLKLDSYSLGIILITMVNNI 453
                  333333334444444555555566666654433323555444444235666666666666665555 PP

>> ACDC  AP2-coincident C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1       0.1   3.7e+02      39      72 ..     446     479 ..     414     483 .. 0.81
   2 ?    8.8   0.1   0.00057         2      24      60 ..     686     721 ..     677     722 .] 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.1
        ACDC  39 lkrvieahikyvenakslkelqpylklFstcilk 72 
                 l +++++ i + +++++ +++++y+   +++i+ 
  CCD24459.1 446 LITMVNNIIPFLNSCNKDAKFRKYVTSYENFIRH 479
                 5678999999999999999999999999998875 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00057
        ACDC  24 pqlasslanktsskelkrvieahikyvenakslkelq 60 
                 ++++ ++ n ts ++ ++v+++h+++v++++ ++ ++
  CCD24459.1 686 SSISIRNGNFTS-RRKRKVVHNHMHIVNSVTGMSNIR 721
                 455666666654.9*****************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1027  (0.0572815); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5053.65
//
Query:       CCD24460.1  [L=1071]
Description: hypothetical protein NDAI_0D01460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-54  183.1   2.5    8.2e-54  183.1   2.5    2.7  3  LicD      LicD family


Domain annotation for each model (and alignments):
>> LicD  LicD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   1.3     0.092   1.7e+03     102     184 ..     286     367 ..     244     393 .. 0.59
   2 !  183.1   2.5   4.6e-58   8.2e-54       1     227 []     584     836 ..     584     836 .. 0.91
   3 ?   -3.2   0.0      0.43   7.7e+03     130     169 ..     980    1019 ..     955    1046 .. 0.65

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.092
        LicD 102 dyvpkskllikkkkekeklkkklalkkslskkdkkelkkkillkkksfklkklnkkkklkkleklekkkeydlkkseyiavlk 184
                 d+++++k+ +   ++++ +++  +++k   k ++++++ ++ +    +kl +++++ k+k+l ++ + +  +l++++yi + +
  CCD24460.1 286 DKYDNKKW-YRLARKSSVRHESTKIDKVCEKINPEDTYVNLRNSSIPKKLPRFTTQFKIKRLFDKLRPEVFQLQARNYILTTQ 367
                 33333332.22222222222222222344444445555555555555666666666666666666666566666666665555 PP

  == domain 2  score: 183.1 bits;  conditional E-value: 4.6e-58
        LicD   1 ckkngleywLsgGTllGavRhggfIPWDDDiDlqmprkdyerLaevfnq.lilkkedlreaekdknylenfaklldkntsiterkngngkn........ 90 
                 +++ngl++wLs+GTl+G++++g+ +PWD+D+Dlq+p+k++++La++fnq lil  ed+re        +n+++l+d +tsit+r+ngngkn        
  CCD24460.1 584 TRSNGLISWLSHGTLYGYLYNGHSFPWDNDFDLQLPIKHLHLLAQYFNQsLIL--EDPRE--------GNGRYLIDIGTSITVRTNGNGKNnidarlvd 672
                 689**********************************************9999..9**99........99***************************** PP

        LicD  91 .dsglyiDIfpldyvpkskll.ikkkkekeklkkklalk...................kslskkdkkelkkkillkkksfklkklnkkkklkkleklek 168
                  d+glyiD ++l+ v + +    ++ ++k+k k+++++                    k+l k + ++l ++i++++++f++++l+k  ++ k+e +  
  CCD24460.1 673 vDTGLYIDLTGLS-VSNGEVReNFADWMKKKAKELHINLdkekvydesevkdldkfdgKDLRKLNCTQLVTWIEKHQEKFSKNDLDKAREAVKKETVDI 770
                 ************7.4444333444455555444444444555689999999999999*****************************************9 PP

        LicD 169 kk....eydlkkseyiavlksgkl...rnkeilpleelsplkkvkFegvevpipnnydkyLtelYg 227
                  k    +++l+++e+++v+k+ +l   rn+++++le +spl++++F+gv+++ip +y + L+++Yg
  CCD24460.1 771 PKsrsgSKNLNPRERYEVNKKLQLfncRNNHYTNLELVSPLINTVFHGVPALIPSKYIASLKKEYG 836
                 999********************9*****************************************8 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 0.43
        LicD  130 lskkdkkelkkkillkkksfklkklnkkkklkkleklekk 169 
                  +   +    +++ ++ ++++k ++l+   k+kk++ +  +
  CCD24460.1  980 INDTTVVAALENSIQMEHVSKVWELTMALKHKKFDIFNIT 1019
                  4445555566666677777777777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1071 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 7161.56
//
Query:       CCD24461.1  [L=2460]
Description: hypothetical protein NDAI_0D01470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.4e-124  414.2   0.0   1.3e-123  412.6   0.0    1.9  1  FAT             FAT domain
    6.9e-71  239.0   0.1    1.7e-70  237.7   0.1    1.7  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    4.3e-62  208.8  14.6    2.1e-61  206.5   0.1    5.1  4  DUF3385         Domain of unknown function (DUF3385)
      3e-42  143.0   3.4    3.5e-42  142.8   0.7    2.7  2  FRB_dom         FKBP12-rapamycin binding domain
    3.2e-16   58.8   1.1    1.1e-15   57.2   1.1    2.0  1  FATC            FATC domain
    1.6e-08   34.1   2.0       0.03   14.6   0.0    6.2  6  HEAT            HEAT repeat
    1.5e-07   31.7   0.0       0.17   12.3   0.0    7.3  7  HEAT_2          HEAT repeats
    0.00018   21.9   8.4       0.23   12.0   0.0    8.5 10  HEAT_EZ         HEAT-like repeat
  ------ inclusion threshold ------
      0.024   15.2   0.0       0.93   10.0   0.0    3.3  2  TPR_19          Tetratricopeptide repeat
       0.16   12.6   7.8        4.9    7.8   0.0    5.5  7  Vac14_Fab1_bd   Vacuolar 14 Fab1-binding region
       0.16   11.9   1.4        1.5    8.8   0.0    3.4  3  DUF3437         Domain of unknown function (DUF3437)
       0.17   11.8  16.9        1.5    8.7   2.4    5.5  4  Sec7_N          Guanine nucleotide exchange factor in Golgi t
        1.2    8.7   6.6        1.2    8.6   0.0    4.2  6  CLASP_N         CLASP N terminal


Domain annotation for each model (and alignments):
>> FAT  FAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.6   0.0  9.4e-127  1.3e-123       1     346 []    1456    1835 ..    1456    1835 .. 0.95

  Alignments for each domain:
  == domain 1  score: 412.6 bits;  conditional E-value: 9.4e-127
                  CCCTTCCCCTSSSGHHCCCCT....TSSSS--CCCHCCCCHH--CCHCHHCCCHCCCCCCCCCTS---SCCCCCHHHHHCCCCCHHHCHHCCHHCSS CS
         FAT    1 aplaaeaaWrlgqWdsmeeylsvlkkdspdkaffeailalhrnqfdeakeliekarqlldtelsalvgesynraygvlvrvQmlaEleeiiqykqkl 97  
                  aplaa aaW+lgqWd++eey  v++ +s dk+ff+ail++hrn++de + +i +ar+ll tels l +esynraygvlvr Q+++Eleeii+yk+ +
  CCD24461.1 1456 APLAAGAAWGLGQWDKLEEYSTVMNVHSSDKEFFDAILCIHRNNLDEGQHHILNARDLLLTELSTLINESYNRAYGVLVRAQIVSELEEIISYKKLP 1552
                  79*********************************************************************************************** PP

                  ----TTTTTTT----TTS-TTTGCCCTTTCCCCTCCCHCCCHCHCCS-STTCCCCCCCCHCHHHHCCSTTHHCCCCCHCTT...........TT.TS CS
         FAT   98 ssseklksllktWrkRlpgcqdnvevwqdiltvRslvlspiedllkgvkaemwlkfanlarksgrlslAekaLkelleedp...eewlp...rappe 188 
                   +s+k+  ++ktW+kRl+gcq+nv++wq++l++Rslv++p++d      a+ w+kfanl+rksgr++lA+kaL++lleed            ra+p 
  CCD24461.1 1553 YNSSKRGLMRKTWNKRLLGCQKNVDIWQRVLRIRSLVIKPKQD------ADLWIKFANLCRKSGRMGLAKKALTSLLEEDGephR---FntvRASPL 1640
                  *******************************************......********************************5422...2457***** PP

                  SCCCHHHHHHHCCHHHHHSSCCHHHHCCTSSCCCSS-SS---...................HHHHCCCTCCCCCCCCCCCT.S...-SSCCHHHHCC CS
         FAT  189 vvyaylKylwssgeqkealqkLreftsellekkeelqsgleaq.......keptnleeftkllarcylkkGewqealqkldwseekieeilqsysaa 278 
                  vvy++lKylw+ g q++al+ L  fts+++ + +  +s+++ +         p+  ee+ kllarc+lk+Gew+ al+  +w+ ++++e+l sy++a
  CCD24461.1 1641 VVYSQLKYLWAIGSQEKALKYLMNFTSRVACDLGLDPSNMISEhypqndrIAPEATEEYMKLLARCFLKQGEWRVALEP-NWRLKNPDEVLGSYLLA 1736
                  **********************************888887777788899989***************************.***************** PP

                  HHCTCCCHSTTCCCCHHHHHCCHHHHHH...SSSS...............................S-TCC.HHHHCCT..CCHHHHTTTSSTTTCH CS
         FAT  279 teidpswykawhtwalfnfevvskeeeq...keeee..............................pedlq.eyvvpavkgflksislssenslqdt 341 
                  t++d+swykawh+wal+nfev+s  +++   +                                  p +++ ++v+pa++gf++sisls+++slqd+
  CCD24461.1 1737 THFDNSWYKAWHNWALANFEVISVITSGggtN---ItdkdislgninlqksgmigantfdteggnyPLTMInRHVIPAIRGFFHSISLSDSSSLQDA 1830
                  *************************9996541...1456778999999999*********999999666666************************* PP

                  HHHHC CS
         FAT  342 lRLLt 346 
                  lRLLt
  CCD24461.1 1831 LRLLT 1835
                  ****8 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.7   0.1   1.2e-73   1.7e-70       2     248 ..    2109    2356 ..    2108    2358 .. 0.99

  Alignments for each domain:
  == domain 1  score: 237.7 bits;  conditional E-value: 1.2e-73
                      EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHH.HHHHCH CS
  PI3_PI4_kinase    2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasves.lrvald 93  
                      +++++k+++d rqd+l++q+f+l++++l+++ ++ rr+l++++y +ipl++k+gi+++v++s+t++ l++e++e++++p + ++ + l++a+d
      CCD24461.1 2109 YQYVLKGHEDIRQDSLVMQLFGLVNTLLKNDDECFRRHLNIQQYPAIPLSPKSGILGWVQNSDTFHVLIKEYREARKIPLNLEHWViLQMAPD 2201
                      78999*******************************************************************************999****** PP

                      CHCCHHHHHCC.HHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHC CS
  PI3_PI4_kinase   94 kkklkkekklk.fekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewk 185 
                       ++l++++k++ f++  +++  ++l++ ++ ks s e wle+r+ ++rsla++s+++yilg+gDRh++N+++++ +gk++hIDfG++++ +  
      CCD24461.1 2202 FDNLTLLEKVEvFTHALENTQGQDLYKVLWFKSRSSESWLERRTIYTRSLAVMSMAGYILGLGDRHPSNLMLNRITGKVVHIDFGDCFEAAIL 2294
                      ********************************************************************************************* PP

                      SSSS-.SSSSSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSS CS
  PI3_PI4_kinase  186 llpfpqekvPfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglilw 248 
                      + +fp ekvPfrltr+l +a++ s+ eg+fr +ce+++++lr +++ l+++l++++ d+li w
      CCD24461.1 2295 REKFP-EKVPFRLTRMLRKAMEVSGIEGTFRITCENVMRVLRDNKESLMAILEAFAFDPLIHW 2356
                      *****.*******************************************************99 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.38   5.3e+02     106     147 ..     357     398 ..     242     411 .. 0.73
   2 ?    4.0   0.8      0.03        41      10     156 ..     629     776 ..     622     819 .. 0.62
   3 !  206.5   0.1   1.5e-64   2.1e-61       1     161 []     824     983 ..     824     983 .. 0.99
   4 ?    3.6   0.4      0.04        55     106     157 ..    1009    1059 ..    1002    1061 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.38
     DUF3385 106 avveaimnifktlglkc..vpfLdqiipallsvirtteesnlre 147
                 + v ai+  +++ ++k    ++Ld i+ ++l v+++t++s  + 
  CCD24461.1 357 KEVYAILPLLSSFDTKLfiKSYLDPIMLHYLMVLKSTTSS--ST 398
                 3455777777777777654789***********9988763..33 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.03
     DUF3385  10 qLLelLlnilkteqsqsirrevikllGilGALDPykhkqveer...aedkkrreeaaretdlsll..mvglspsneeyyptvvinaLlrilkdpsls.. 101
                 ++L+ Ll++  t+   +ir+ev++ l+   A D +  +  ++r          +++  + +++++  + +ls+ n  y+     ++Ll++l +  +s  
  CCD24461.1 629 EVLSKLLTVSITDPVSEIRLEVLRHLTS--AFDSHLAQPDNSRllfM----AVNDEIFTIQIEAIkiVARLSSVNPAYFMPSLRKTLLELLTQLRYSnm 721
                 5677777777777788888888888876..88888886655443321....223333344444444466777777777777777777777755444422 PP

     DUF3385 102 shhaavveaimnifktlglkc.vpfLdqiipallsvirtteesnlrefllqqLatL 156
                 + +++   ++++ + + g++   p+++ ++  ll  +++ ++ ++  + l++L+ L
  CCD24461.1 722 PRKKEEYATLLYTMIQSGSEItKPYIEPVLDVLLPRCQDPSS-SVASTSLKALGEL 776
                 333333444444444446666577777777777777776655.6666666666665 PP

  == domain 3  score: 206.5 bits;  conditional E-value: 1.5e-64
     DUF3385   1 VvdPyleypqLLelLlnilkteqsqsirrevikllGilGALDPykhkqveeraedkkrreeaaretdlsllmvglspsneeyyptvvinaLlrilkdps 99 
                 V++P+l+yp+LL++L+nil+ +  q+++re+ikl+GilGALDPyk++ +e+ra+ +++ e+++++ d++llm+g+sps++eyyptvv+n+Ll+il dp+
  CCD24461.1 824 VIEPLLDYPELLGILINILRGDGPQDVKRETIKLIGILGALDPYKVRAIEGRASLESQIEQNTPSIDIALLMKGMSPSDDEYYPTVVVNTLLKILYDPT 922
                 9***************************************************999999***************************************** PP

     DUF3385 100 lsshhaavveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLatLvsivk 161
                 lsshh+av++ai+ni+++lg++cv+fLd+++p llsv+rt+++ +l+ef++qqL++L+siv+
  CCD24461.1 923 LSSHHTAVIQAILNIYQSLGVRCVSFLDKVVPGLLSVMRTCTP-SLLEFYFQQLSMLISIVR 983
                 *******************************************.*****************7 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.04
     DUF3385  106 avveaimnifktlglkcvpfLdqiipallsvirtteesnlrefllqqLatLv 157 
                  +++++i  i k l+++  ++++ ++ ++l ++++ ++ n + + ++ L +L+
  CCD24461.1 1009 TIISTIEAISKALESEFKKYVPLVLTSYLAILENDKS-NKKAVSIRILKSLI 1059
                  6899*****************************9776.88888887777776 PP

>> FRB_dom  FKBP12-rapamycin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       4.2   5.9e+03      10      26 ..    1389    1408 ..    1385    1430 .. 0.71
   2 !  142.8   0.7   2.5e-45   3.5e-42       1      99 []    1942    2040 ..    1942    2040 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 4.2
     FRB_dom   10 hElwhegL...eeAsrlyfg 26  
                  +E+w+e L   e+A ++y +
  CCD24461.1 1389 KEIWYEKLqrwEDALTAYNE 1408
                  79999999666666666644 PP

  == domain 2  score: 142.8 bits;  conditional E-value: 2.5e-45
     FRB_dom    1 ELiRvAilwhElwhegLeeAsrlyfgeknveamlklleplhellekgpetlreasFaqafgreLkeaeewlkkykkteneedlnqawdiyyevfrri 97  
                  ELiRvA+lwhElw+egLe+Asr+yfge+++++ml+ leplh+ll++g+etlre+sF++afgr+L++a+ew+++yk+t+++++lnqawdiyy+vfr+i
  CCD24461.1 1942 ELIRVAVLWHELWYEGLENASRHYFGENDISKMLSSLEPLHDLLQNGAETLREISFQNAFGRDLNNAYEWVNNYKQTKDKTNLNQAWDIYYNVFRKI 2038
                  9************************************************************************************************ PP

     FRB_dom   98 kk 99  
                  +k
  CCD24461.1 2039 SK 2040
                  86 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   1.1   7.7e-19   1.1e-15       2      32 .]    2430    2460 .]    2429    2460 .] 0.97

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 7.7e-19
        FATC    2 LsveqQVdrLIkeATdpeNLaqmyiGWcPww 32  
                  L v++QV++LI++A ++eNL+q+yiGWcP+w
  CCD24461.1 2430 LAVPEQVEQLIQQAISVENLCQHYIGWCPFW 2460
                  789**************************** PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.8   3.8e+03      12      28 ..     174     190 ..     173     190 .. 0.87
   2 ?   -0.1   0.0       1.1   1.5e+03       9      22 ..     591     604 ..     585     610 .. 0.82
   3 ?   -1.6   0.0       3.5   4.9e+03       5      24 ..     635     654 ..     631     656 .. 0.76
   4 !   11.6   0.1   0.00019      0.26       1      28 [.     750     777 ..     750     779 .. 0.93
   5 !   14.6   0.0   2.1e-05      0.03       1      29 [.     791     819 ..     791     821 .. 0.95
   6 ?   -1.9   0.1       4.2   5.7e+03      19      30 ..    1090    1101 ..    1089    1102 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.8
                 SSHHHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLgala 28 
                 ++ eV + Aa++Lg+la
  CCD24461.1 174 NDIEVMRLAANTLGKLA 190
                 57899999******997 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.1
                 HT-SSHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAak 22 
                 +++++++VR+ Aa+
  CCD24461.1 591 IEHEDSDVRKLAAL 604
                 6799*******996 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3.5
                 HHHHHT-SSHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaL 24 
                 l   ++Dp +e+R  +++ L
  CCD24461.1 635 LTVSITDPVSEIRLEVLRHL 654
                 445579*******9888765 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 0.00019
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 +l++ll  ++Dps++V ++++kaLg+l+
  CCD24461.1 750 VLDVLLPRCQDPSSSVASTSLKALGELS 777
                 5899*********************995 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 2.1e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l+Pl+++  +D s++ R aA+k+L +la 
  CCD24461.1 791 LMPLIINTFQDHSSFKRNAALKTLSQLAT 819
                 8**************************96 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 4.2
                  HHHHHHHHHHHC CS
        HEAT   19 aAakaLgalaev 30  
                   A+ aLg+la++
  CCD24461.1 1090 IAVIALGKLAKN 1101
                  5999******97 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.29     4e+02      31      61 ..     162     192 ..     145     202 .. 0.85
   2 ?    0.7   0.0       0.5   6.8e+02      19      52 ..     565     603 ..     558     606 .. 0.69
   3 ?    3.9   0.0     0.052        72       3      70 ..     633     708 ..     628     715 .. 0.79
   4 !   12.3   0.0   0.00012      0.17       1      85 [.     751     856 ..     751     859 .. 0.75
   5 ?    1.5   0.0      0.29     4e+02       4      26 ..     838     862 ..     835     880 .. 0.80
   6 ?   -1.3   0.0       2.1     3e+03      51      80 ..    1091    1128 ..    1073    1133 .. 0.69
   7 ?    0.3   0.0       0.7   9.6e+02       2      51 ..    1867    1918 ..    1858    1933 .. 0.51

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.29
      HEAT_2  31 ealpaLvellededpavRraaaeaLgaigdp 61 
                 ++ ++L+ l+ + d +v r aa++Lg+++ p
  CCD24461.1 162 RLANYLRVLIPSNDIEVMRLAANTLGKLAVP 192
                 6788899999999*************99755 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.5
      HEAT_2  19 aairaLgrignpea.....lpaLvellededpavRraaa 52 
                 +a++ L +i+ +++     +++++ ++e+ed++vR+ aa
  CCD24461.1 565 QALKMLRSINYKKSltefaRQIIIFYIEHEDSDVRKLAA 603
                 56666665555544333337777778899*****99998 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.052
      HEAT_2   3 aLlqalendpdpevrraairaLg.....rignpealpaLvellededpavRraaaeaLgaigd..pe.alpaLkel 70 
                 +Ll +  +dp  e+r +++r L       ++ p+  ++L+ +++de   ++ +a++  +++ +  p+ + p+L++ 
  CCD24461.1 633 KLLTVSITDPVSEIRLEVLRHLTsafdsHLAQPDNSRLLFMAVNDEIFTIQIEAIKIVARLSSvnPAyFMPSLRKT 708
                 566666689999***********9888778889999********************99988753322355555554 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 0.00012
      HEAT_2   1 ldaLlqalendpdpevrraairaLg..........rignpealpaLvellededpavRraaaeaLgaig............dpealpaLkelldddddd 77 
                 ld+Ll +  +dp+  v+ + ++aLg          +++   ++p++++  +d+++  R aa ++L++++             pe l +L  +l+ d  +
  CCD24461.1 751 LDVLLPRC-QDPSSSVASTSLKALGelsvvagediKKHLNVLMPLIINTFQDHSSFKRNAALKTLSQLAtsssyvieplldYPELLGILINILRGDGPQ 848
                 58899999.8***************8776665533223335688888888****************996444444444332488899999999998888 PP

      HEAT_2  78 vvReaAae 85 
                 +v++++++
  CCD24461.1 849 DVKRETIK 856
                 88888776 PP

  == domain 5  score: 1.5 bits;  conditional E-value: 0.29
      HEAT_2   4 LlqalendpdpevrraairaLg..r 26 
                 L+++l+ d  ++v+r++i+ +g   
  CCD24461.1 838 LINILRGDGPQDVKRETIKLIGilG 862
                 8999*99***********9999442 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 2.1
      HEAT_2   51 aaeaLgaig........dpealpaLkellddddddvvR 80  
                  a+ aLg+++        +++ ++ L +ll++ + d+++
  CCD24461.1 1091 AVIALGKLAkninlcemSSRIVQTLIRLLNRGEPDLIK 1128
                  66677766444444444566777777777776666665 PP

  == domain 7  score: 0.3 bits;  conditional E-value: 0.7
      HEAT_2    2 daLlqalendpdpevrraairaLgrignp...ealpaLvellededpavRraa 51  
                  ++L++++ + p++ v r  +  L ++g      ++  L+ ++++e+   +raa
  CCD24461.1 1867 PQLISRI-HQPNQFVSRSLLSLLSELGKAypqALVYPLTVAIKSESVSRQRAA 1918
                  4455555.455555555555555543332111334444444444443333333 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.4   1.9e+03      43      55 .]     177     189 ..     158     205 .. 0.69
   2 ?   -0.1   0.0         1   1.4e+03       5      52 ..     230     277 ..     225     279 .. 0.69
   3 ?   -2.7   0.0       6.6   9.1e+03       6      38 ..     404     437 ..     403     439 .. 0.84
   4 ?   -2.6   0.0       6.4   8.8e+03      23      53 ..     625     655 ..     617     656 .. 0.71
   5 !   10.2   0.0   0.00062      0.86      16      55 .]     737     776 ..     729     776 .. 0.90
   6 !   12.0   0.0   0.00016      0.23       8      55 .]     770     817 ..     769     817 .. 0.91
   7 ?    0.8   0.0      0.54   7.4e+02       4      46 ..     807     853 ..     804     859 .. 0.77
   8 ?   -1.1   0.0       2.2     3e+03      21      41 ..    1277    1297 ..    1275    1302 .. 0.84
   9 ?   -2.5   0.1       5.9   8.1e+03      46      54 ..    1460    1468 ..    1449    1469 .. 0.62
  10 ?   -1.9   0.1       3.7     5e+03      20      51 ..    1925    1951 ..    1914    1951 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.4
     HEAT_EZ  43 eVRaaAagaLgnl 55 
                 eV   Aa +Lg+l
  CCD24461.1 177 EVMRLAANTLGKL 189
                 6666666666654 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1
     HEAT_EZ   5 raAawaLGrlaggepellqplvpeilpaLlalLnddsd.eV.RaaAagaL 52 
                 +aA++ + +la + p ll p++  il    ++L   +  +V R  Aa +L
  CCD24461.1 230 HAALLLITALADNSPYLLYPYINPILENIWRAL--RDIkLViRMDAAVTL 277
                 566668877***********9999998776666..444455566666665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 6.6
     HEAT_EZ   6 aAaw.aLGrlaggepellqplvpeilpaLlalLn 38 
                 aA++  +G +a++ + ++  +++ il+    +L+
  CCD24461.1 404 AAILvSIGDIAFQVKSHITRYIDPILDTIRDGLK 437
                 788888999**************99998886665 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 6.4
     HEAT_EZ  23 qplvpeilpaLlalLnddsdeVRaaAagaLg 53 
                 q + +++ ++L    +d+ +e+R  ++++L+
  CCD24461.1 625 QSVSEVLSKLLTVSITDPVSEIRLEVLRHLT 655
                 4444455555557779999999999999996 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00062
     HEAT_EZ  16 ggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 + ++e  +p+++ +l+ Ll++ +d+s++V  +++ aLg l
  CCD24461.1 737 QSGSEITKPYIEPVLDVLLPRCQDPSSSVASTSLKALGEL 776
                 667788899*****************************86 PP

  == domain 6  score: 12.0 bits;  conditional E-value: 0.00016
     HEAT_EZ   8 awaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 + aLG+l ++++e++++++ +++p+ +++ +d s+  R aA+ +L++l
  CCD24461.1 770 LKALGELSVVAGEDIKKHLNVLMPLIINTFQDHSSFKRNAALKTLSQL 817
                 679***************************9866666********997 PP

  == domain 7  score: 0.8 bits;  conditional E-value: 0.54
     HEAT_EZ   4 RraAawaLGrlaggepellqp..lvpeilpaLlalLnddsd.eV.Ra 46 
                 R+aA+ +L+ la   +  ++p    pe+l  L++ L+ d + +V R+
  CCD24461.1 807 RNAALKTLSQLATSSSYVIEPllDYPELLGILINILRGDGPqDVkRE 853
                 78888899888888888888877779999999999966665599554 PP

  == domain 8  score: -1.1 bits;  conditional E-value: 2.2
     HEAT_EZ   21 llqplvpeilpaLlalLndds 41  
                  l +p+ +++++aL+ +L++++
  CCD24461.1 1277 LYSPYRDDLIKALCVALSSPQ 1297
                  6689999**********9976 PP

  == domain 9  score: -2.5 bits;  conditional E-value: 5.9
     HEAT_EZ   46 aaAagaLgn 54  
                  a Aa+ Lg+
  CCD24461.1 1460 AGAAWGLGQ 1468
                  445555555 PP

  == domain 10  score: -1.9 bits;  conditional E-value: 3.7
     HEAT_EZ   20 ellqplvpeilpaLlalLnddsdeVRaaAaga 51  
                    ++  v ++ ++L+     +s ++R a++++
  CCD24461.1 1925 MRMHSPVLVAQAELV-----SSELIRVAVLWH 1951
                  556666666778999.....999******997 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00068      0.93      23      62 ..    1594    1633 ..    1586    1638 .. 0.87
   2 ?    0.6   0.0      0.61   8.4e+02      30      42 ..    1702    1714 ..    1689    1718 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00068
      TPR_19   23 knaearllLAeallalgqldeAealLdalpeedpddarya 62  
                  ++a++++  A+++ ++g+   A+++L  l+eed    r  
  CCD24461.1 1594 QDADLWIKFANLCRKSGRMGLAKKALTSLLEEDGEPHRFN 1633
                  59*******************************9865555 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.61
      TPR_19   30 lLAeallalgqld 42  
                  lLA++ l++g++ 
  CCD24461.1 1702 LLARCFLKQGEWR 1714
                  59********985 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.9   8.1e+03      22      55 ..     248     281 ..     231     305 .. 0.62
   2 ?    2.5   0.0      0.16   2.2e+02       4      58 ..     404     458 ..     401     479 .. 0.88
   3 ?    0.7   0.2      0.57   7.9e+02      18      84 ..     576     646 ..     566     651 .. 0.63
   4 ?    7.1   0.0    0.0059       8.1       5      44 ..     768     807 ..     728     817 .. 0.68
   5 ?    7.8   0.0    0.0036       4.9       5      55 ..     768     818 ..     764     854 .. 0.82
   6 ?   -1.2   0.1       2.3   3.1e+03      15      72 ..     939     996 ..     901    1001 .. 0.57
   7 ?   -3.1   0.0       9.3   1.3e+04       9      38 ..    1013    1042 ..    1009    1047 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.9
  Vac14_Fab1_bd  22 keyleeivkpvlkcfsDkdsrvRyyacEslynia 55 
                     +y++ i++ + ++++D    +R  a+ +l    
     CCD24461.1 248 YPYINPILENIWRALRDIKLVIRMDAAVTLRKCL 281
                    4556666666666666666666655555554444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.16
  Vac14_Fab1_bd   4 kggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakva 58 
                     + l+++  +a +++++i++y++ i++++ + ++ k ++ + +  E +y i k a
     CCD24461.1 404 AAILVSIGDIAFQVKSHITRYIDPILDTIRDGLKSKFKHRKLFEKELFYCIGKLA 458
                    55688899999999999***********999999999999999999999998875 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.57
  Vac14_Fab1_bd  18 ekkikeyleeivkpvlkcfsDkdsrvRyya....cEslyn..iakvakgevlkllneifdalvkl.vaDsdesv 84 
                    +k+++e+ ++i+   + +++ +ds vR  a    cE +    i+k++  ++l+ ++e+++ l  + ++D  +++
     CCD24461.1 576 KKSLTEFARQII---IFYIEHEDSDVRKLAalitCELFTKdpICKQISRNALQSVSEVLSKLLTVsITDPVSEI 646
                    555555555554...44555556666644322227766545599999999999999999887665256666665 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0059
  Vac14_Fab1_bd   5 ggligLaavaialekkikeyleeivkpvlkcfsDkdsrvR 44 
                     +l +L  +++  +++ik++l+ +++ ++++f+D++s  R
     CCD24461.1 768 TSLKALGELSVVAGEDIKKHLNVLMPLIINTFQDHSSFKR 807
                    3566666667777777777777777777777777766544 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0036
  Vac14_Fab1_bd   5 ggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslynia 55 
                     +l +L  +++  +++ik++l+ +++ ++++f+D++s  R  a  +l  +a
     CCD24461.1 768 TSLKALGELSVVAGEDIKKHLNVLMPLIINTFQDHSSFKRNAALKTLSQLA 818
                    578899999***************************998888887776665 PP

  == domain 6  score: -1.2 bits;  conditional E-value: 2.3
  Vac14_Fab1_bd  15 ialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifda 72 
                     +l+ +  ++l+++v+ +l++++     +  +    l  ++ +++++v  ++ eif++
     CCD24461.1 939 QSLGVRCVSFLDKVVPGLLSVMRTCTPSLLEFYFQQLSMLISIVRQHVRPYVDEIFSV 996
                    3444455556666666666665555444444444555555556666666666666655 PP

  == domain 7  score: -3.1 bits;  conditional E-value: 9.3
  Vac14_Fab1_bd    9 gLaavaialekkikeyleeivkpvlkcfsD 38  
                     ++ a++ ale++ k+y+  ++++ l++++ 
     CCD24461.1 1013 TIEAISKALESEFKKYVPLVLTSYLAILEN 1042
                     567889999999999999999998888764 PP

>> DUF3437  Domain of unknown function (DUF3437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0011       1.5       3      52 ..     228     278 ..     226     281 .. 0.93
   2 ?   -1.7   0.0         2   2.7e+03       9      41 ..    1012    1045 ..    1007    1054 .. 0.77
   3 ?   -3.1   0.0       5.7   7.8e+03      22      60 ..    2298    2336 ..    2296    2337 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0011
     DUF3437   3 erhaavlglsAlvlafpydvPkwlpevleeLaraardpa.pirktvkktls 52 
                 ++haa+l + Al    py + +++ ++le++ ra rd +  ir  +  tl+
  CCD24461.1 228 RKHAALLLITALADNSPYLLYPYINPILENIWRALRDIKlVIRMDAAVTLR 278
                 79************************************9889999988876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2
     DUF3437    9 lglsAlvlafpydvPkwlpevlee.Laraardpa 41  
                    + A+ +a   ++ k++p vl++ La  ++d++
  CCD24461.1 1012 STIEAISKALESEFKKYVPLVLTSyLAILENDKS 1045
                  5667888889999999***999998888888876 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.7
     DUF3437   22 vPkwlpevleeLaraardpapirktvkktlseFkrthqD 60  
                  +P+ +p  l+++ r+a + + i+ t + t+++  r  +D
  CCD24461.1 2298 FPEKVPFRLTRMLRKAMEVSGIEGTFRITCENVMRVLRD 2336
                  799999999999999999889999999988887776665 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.4      0.32   4.4e+02      63     102 ..     625     664 ..     606     717 .. 0.79
   2 ?    6.7   0.0    0.0046       6.4      65     144 ..     750     826 ..     731     831 .. 0.88
   3 ?    8.7   2.4    0.0011       1.5      50     137 ..     971    1060 ..     956    1068 .. 0.78
   4 ?    0.8   0.3       0.3   4.2e+02      63     111 ..    1109    1156 ..    1094    1181 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.32
      Sec7_N  63 qklcplLlknlsespsfpvferslrivllLlkkfrseLkt 102
                 q + ++L+k+l+ s + pv+e+ l+++ +L + f s+L +
  CCD24461.1 625 QSVSEVLSKLLTVSITDPVSEIRLEVLRHLTSAFDSHLAQ 664
                 567778888888999999************9999999975 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0046
      Sec7_N  65 lcplLlknlsespsfpvferslrivllLlkkfrseLktEievflsllilillesdsslwqrvlaLeilrrlcsdpqllve 144
                 ++++Ll  + + ps +v + sl+ +  L     + +k+ + v++ l+i  +  +d s+ +r  aL++l +l + +  ++e
  CCD24461.1 750 VLDVLLPRC-QDPSSSVASTSLKALGELSVVAGEDIKKHLNVLMPLIINTF--QDHSSFKRNAALKTLSQLATSSSYVIE 826
                 667788888.899**************************************..7778899***********998887765 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0011
      Sec7_N   50 vfrkhpellqllkqklcplLlknls.espsfpvferslrivllLlkkfrseLktEievflsllililles..dsslwqrvlaLeilrrlcs 137 
                   f++ + l+++++q++ p +  ++s  +  fp++ + + i+++ ++  ++ L++E + ++ l++   l    + +++++++ ++il++l+ 
  CCD24461.1  971 YFQQLSMLISIVRQHVRPYVDEIFSvIQMFFPIIKLQITIIST-IEAISKALESEFKKYVPLVLTSYLAIleNDKSNKKAVSIRILKSLIV 1060
                  47799999****************9656799****99999987.466666777776666666665555444477779*********99875 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.3
      Sec7_N   63 qklcplLlknlsespsfpvferslrivllLlkkfrseLktEievflsll 111 
                  +++++ L+++l ++ ++ ++  s++++ lLl ++ + ++  i ++ ++l
  CCD24461.1 1109 SRIVQTLIRLL-NRGEPDLIKTSMNTLCLLLLQQGTDFVVFIPILNKVL 1156
                  57888999999.8899999999999999999888777664444444443 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       0.4   5.6e+02      73     122 ..     232     281 ..     220     288 .. 0.87
   2 ?   -2.5   0.1       2.2   3.1e+03      56     101 ..     387     434 ..     371     441 .. 0.80
   3 ?   -3.1   0.0       3.5   4.8e+03     169     194 ..     625     649 ..     585     674 .. 0.71
   4 ?    8.6   0.0   0.00088       1.2      63     127 ..     759     823 ..     723     829 .. 0.87
   5 ?   -2.8   0.0       2.7   3.7e+03      31      63 ..     978    1009 ..     972    1078 .. 0.62
   6 ?   -2.4   0.0       2.1   2.9e+03      82     162 ..    1059    1142 ..    1048    1174 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.4
     CLASP_N  73 gchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaall 122
                 +++l+  la      l p+++ +l+++ + l d K +i++ a+++l   l
  CCD24461.1 232 ALLLITALADNSPYLLYPYINPILENIWRALRDIKLVIRMDAAVTLRKCL 281
                 66788888888888899***************************998655 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
     CLASP_N  56 eailkalssLrttlsstgchllk..elaiqlkeqldpmveillptLlk 101
                  ++lk+++s +t  s ++  l++  ++a q k+++  +++ +l+t+ +
  CCD24461.1 387 LMVLKSTTSSSTVNSDKAAILVSigDIAFQVKSHITRYIDPILDTIRD 434
                 57888899999999999988875559999*********9999999876 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.5
     CLASP_N 169 easllldliekslkkgleDanptVR.e 194
                 +   + + + k+l+  ++D+ +++R e
  CCD24461.1 625 QS--VSEVLSKLLTVSITDPVSEIRlE 649
                 22..33677888888888888888844 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.00088
     CLASP_N  63 ssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnasf 127
                 ++ ++++ st+++ l el+ + +e++++ ++ l+p++++  +d+    +++a  +l++l ++ s+
  CCD24461.1 759 QDPSSSVASTSLKALGELSVVAGEDIKKHLNVLMPLIINTFQDHSSFKRNAALKTLSQLATSSSY 823
                 56679999************************************************999988876 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 2.7
     CLASP_N   31 lrslikgnvpedaveelleclkqlleailkals 63  
                  l s+++++  + +v+e++++++ +   i  +++
  CCD24461.1  978 LISIVRQH-VRPYVDEIFSVIQMFFPIIKLQIT 1009
                  55666666.556666677666644333333332 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 2.1
     CLASP_N   82 iqlkeqldpmveillptLlkllgdtKkiisqnanqalaallsnas...fsprilqvlsvalqdKnvqpReysaiwLkilltrfe 162 
                  i+l++ l+ +++ ++p+ +++      +  + a +al  l +n++   +s+ri+q l  +l+   + +  +s++ L +ll +++
  CCD24461.1 1059 IVLGPYLEDFSHLIIPSVVRMSEYSPGMLGKIAVIALGKLAKNINlceMSSRIVQTLIRLLNRGEPDLIKTSMNTLCLLLLQQG 1142
                  566777777777777777777777777777777777777777755333566666666666666566666666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.25u 0.30s 00:00:01.55 Elapsed: 00:00:00.47
# Mc/sec: 15627.60
//
Query:       CCD24462.1  [L=1065]
Description: hypothetical protein NDAI_0D01480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.4e-36  125.0  10.1    1.5e-35  122.4   0.7    4.3  5  Xpo1         Exportin 1-like protein
  ------ inclusion threshold ------
      0.056   13.4   3.6       0.66    9.9   0.3    3.4  3  IBN_N        Importin-beta N-terminal domain
       0.27   11.1   3.6        1.4    8.7   0.1    3.0  3  MOR2-PAG1_C  Cell morphogenesis C-terminal


Domain annotation for each model (and alignments):
>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.51   3.1e+03      27      51 ..      41      65 ..      26      94 .. 0.56
   2 !  122.4   0.7   2.5e-39   1.5e-35       1     149 []     101     272 ..     101     272 .. 0.97
   3 ?    0.4   0.0       0.1   6.2e+02      64     115 ..     338     381 ..     323     424 .. 0.58
   4 ?    1.6   0.1     0.043   2.6e+02       3      79 ..     349     450 ..     347     462 .. 0.69
   5 !    4.0   0.0    0.0082        49      75     121 ..     893     940 ..     875     952 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.51
                HHHHHHHHHCT.HHHHHHHHHHHHH CS
        Xpo1 27 ffddllsllssspsglelllriLkv 51
                +f++ll  l+s++ +  + l++L  
  CCD24462.1 41 LFSSLLTDLQSDDLARFVALQVLCD 65
                3444444444444444444444444 PP

  == domain 2  score: 122.4 bits;  conditional E-value: 2.5e-39
                 THHHHHHHHHHHHHHHHHHT....TTTSTTHHHHHHHHHCT............HHHHHHHHHHHHHHHHHHHT..SHTTTSCHHHHHHHHHHHHHH.HH CS
        Xpo1   1 pkflrnklaealaelflqey....pnnWpsffddllsllsss...........psglelllriLkvlpeEiad..fsrskleqerrndlkdllrsn.vq 81 
                 p+++rnk++e+++ lf+++y     n+W+sff+dl+ l++ +           + gl+++lri+  +++Eiad  f rsk+ q ++n+lkd++r + +q
  CCD24462.1 101 PEYVRNKISELITGLFYNMYgdcnSNHWSSFFQDLITLSKIDsltkspidefsKLGLDYFLRICGFINSEIADqtFIRSKELQIKNNNLKDTMRIRdIQ 199
                 689*****************99999****************88******************************************************** PP

                 HHHHHHHHHHHHHHHCC.....HHHHHHHHHHHHHHHHTTTS-HHHHHTSCHHHHHHHHCCSCCCHHHHHHHH CS
        Xpo1  82 kilelllqileqsqskk.....qsselveavLkclsswvswidiglivnnpllnllfqlLsdpelreaavecL 149
                 ++++++l+ l++s  ++     + + +v  +L +++s++swid++livn++++++++++L+ p +r+a+++ L
  CCD24462.1 200 TLVTIWLNTLKASIPQQlqqqsNATGIVVLTLSVIGSYISWIDLSLIVNPEYISVIYSYLDFPGTRIACAQAL 272
                 ************9999999998999********************************************9976 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.1
                 SCHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT CS
        Xpo1  64 leqerrndlkdllrsn.vqkilelllqileqsqskkqsselveavLkclsswv 115
                 + q+ +n   +++ ++ ++ +++++++  ++         ++++++  +s+++
  CCD24462.1 338 EIQQVANSADQQILTQvAPLVFKFMSHEYDS---------VTQQCFPFISQYL 381
                 5555555555555555444444444443333.........3333333333333 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.043
                 HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.........................HHHHHHHHHHHHHHHHHHH.TSHTTTSCHHHHHHHHHHH CS
        Xpo1   3 flrnklaealaelflqeypnnWpsffddllsllsss........................psglelllriLkvlpeEia.dfsrskleqerrndlkdll 76 
                  +++++a ++ +++ +ey +  +++f+ + + ls                          p+++e+++ +L+++ +    d s+++ ++++ +++ +++
  CCD24462.1 349 QILTQVAPLVFKFMSHEYDSVTQQCFPFISQYLSILkkifalggkpgcaialmskkqpldPQHQEFIISLLNIIFKKMKiDESSDEDSEDEIEEFTETI 447
                 678888888888888888666666666666655554455666666688888888888888999999999999886655404455556666677777777 PP

                 HHH CS
        Xpo1  77 rsn 79 
                 rs+
  CCD24462.1 448 RSK 450
                 776 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.0082
                 HHHHHHHHHHHHHHHHHHHHHHCC.HHHHHHHHHHHHHHHHTTTS-HH CS
        Xpo1  75 llrsnvqkilelllqileqsqskk.qsselveavLkclsswvswidig 121
                 ll++++ +il +ll+ l +++ ++ q+++  + +L++l+++++ +  g
  CCD24462.1 893 LLTEKTRQILPSLLTELLTYTPEEvQETSAMKLALNVLNNFIKYFGSG 940
                 455557777776665555555555599999999999999999866555 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00011      0.66       4      72 ..      28     112 ..      25     113 .. 0.86
   2 ?    2.6   0.0     0.022   1.3e+02      14      45 ..     268     300 ..     264     343 .. 0.90
   3 ?   -3.6   0.0       1.8   1.1e+04      31      44 ..     917     935 ..     891     939 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00011
                 HHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHC................GSXHHHH..HHHHHHHHHHH CS
       IBN_N   4 qLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekq................slpseek..eqIrnnllnll 72 
                  L ++ + p+++++ +++l++ +s+  +R+ A+++L   ++ +  +++++q                +++++++  e++rn++ +l+
  CCD24462.1  28 FLTEARSDPNAAQLFSSLLTDLQSDDLARFVALQVLCDIVKDS--SNNNSQqslifikdvvsellqtKITNNIRdpEYVRNKISELI 112
                 5888999**************99999***************99..556666689999999999888888888888888888887765 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.022
                 HHHHHHHHHHCTTSHH.HHHHHHHHHHHHHHHH CS
       IBN_N  14 flsallqilansesel.evRqlAalyLknlitk 45 
                 +++al++i+a++ +++  + +l+ l L+ ++t+
  CCD24462.1 268 CAQALCEIIAKKMKPMeKLNLLSMLNLTDKVTS 300
                 899********999955999*****99999986 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.8
                 HH.....HHHHHHHHHHHH CS
       IBN_N  31 vR.....qlAalyLknlit 44 
                 v+      lA+ +L n+i+
  CCD24462.1 917 VQetsamKLALNVLNNFIK 935
                 3333333567777777776 PP

>> MOR2-PAG1_C  Cell morphogenesis C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.036   2.2e+02     162     232 ..      23      92 ..      14     100 .. 0.80
   2 ?    8.7   0.1   0.00024       1.4      77     215 ..     292     431 ..     287     442 .. 0.83
   3 ?   -1.8   0.1      0.38   2.3e+03     233     244 ..     918     929 ..     863     937 .. 0.48

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.036
  MOR2-PAG1_C 162 kqvvkalreayfpehesealvlllgllengpewlrrktlqiLkvllqeidlrkpaeisslgsdllspllrl 232
                  kq++  l ea ++ +++++++ ll  l+ + +  r   lq+L+ ++++   ++++++  +  d++s ll+ 
   CCD24462.1  23 KQALDFLTEARSDPNAAQLFSSLLTDLQ-SDDLARFVALQVLCDIVKDSSNNNSQQSLIFIKDVVSELLQT 92 
                  6788888888888888888888888775.567789999*********999998888877888887777765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00024
  MOR2-PAG1_C  77 lellskLtklsddelvdssds.rllllilalLPrllqaleekeedqkvlevAenlaalaeekglenLarvltsyakgrfr....tkddflkqvvkalr 169
                  l+l +k t+l++d++   ++   l   +   L  +l++++e+++++++++vA++    a+++ l+++a ++ +++++++     ++  f++q ++ l+
   CCD24462.1 292 LNLTDKVTSLEHDDIEVYEQLaKLSASVGLELSIILEQCNEGDSTPEIQQVANS----ADQQILTQVAPLVFKFMSHEYDsvtqQCFPFISQYLSILK 385
                  6677888888888886655656888889999***********99****999986....778888888888888888877522125667********** PP

  MOR2-PAG1_C 170 eayfpehesealvlllgllengpewlrrktlqiLkvllqeidlrkp 215
                  + +    +  +++ l++  +   ++ ++ ++++L++++++++++++
   CCD24462.1 386 KIFALGGKPGCAIALMSKKQPLDPQHQEFIISLLNIIFKKMKIDES 431
                  *********9999999999999999****************99965 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.38
  MOR2-PAG1_C 233 letelcseALeV 244
                   et+ ++ AL+V
   CCD24462.1 918 QETSAMKLALNV 929
                  133344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1065 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       938  (0.0523175); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 7329.66
//
Query:       CCD24463.1  [L=200]
Description: hypothetical protein NDAI_0D01490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-50  171.9   0.0    1.5e-50  171.7   0.0    1.0  1  Ham1p_like  Ham1 family


Domain annotation for each model (and alignments):
>> Ham1p_like  Ham1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.7   0.0   8.4e-55   1.5e-50       1     186 [.       7     191 ..       7     192 .. 0.87

  Alignments for each domain:
  == domain 1  score: 171.7 bits;  conditional E-value: 8.4e-55
                 EEEC-S-HHHHHHHHHHTTTECCCE..EECCC.CEE----BS.SSHHHHHHHHHHHHHHH...TS-EEEEEEEEEEGGGTTTBGGGTTTTTHTTCHHHH CS
  Ham1p_like   1 ivfaTgNkgKlrevkeilaeellevk.slkel.elpeveEtq.gtfeenalkKaraaaea...glpvladDsgLevdaLnglPGvysarfagegaedee 93 
                 i+f+TgN++Kl+evk ila+++ e + s++ + e  ++eE q  ++e++al+K+++a+++   g pv+++D++L +d +nglPG y+++f      ++ 
  CCD24463.1   7 IIFVTGNANKLKEVKMILAPSENEPSpSFTIVnEALDLEELQdIDLEAIALAKCKQAVQIlgpGRPVFVEDTALRFDEFNGLPGAYIKWFV-----KSM 100
                 89****************984333332443337778889***99**************95578888************************5.....345 PP

                 HHHHHHHHCTHTT.S--EEEEEEEEEEEETTTTEEEEEEEEEEEEE-SS.--SSSSTTGGGEEETT-SS.BTTTS.CHHHHHHSHHHHHHHHHHH CS
  Ham1p_like  94 nlaklleeleeee.edrsArfvcvlaladpeeeeellfeGeveGeiveeprgeggfGyDpiFvpeegek.tfaelskeeknaiShRgkAleklle 186
                 +lak++++l+  + e+++A++v+++++ad+ ++++++f+G+++G+iv+ +rg++ fG+D+iF+p eg++ t+ae++k+ kn iS Rg+A+++l++
  CCD24463.1 101 GLAKIVQMLQ--PfENKGAEAVTTIVYADG-KGQYHTFQGITRGTIVD-SRGPTTFGWDSIFQPIEGKGqTYAEMEKKDKNLISQRGRAFAQLKD 191
                 7788888885..55689************8.7777************8.9**************966667***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1467.27
//
Query:       CCD24464.1  [L=321]
Description: hypothetical protein NDAI_0D01500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-36  122.4   2.2    1.2e-17   64.0   0.0    3.3  3  HEAT_2     HEAT repeats
      1e-20   72.2   5.2    1.1e-05   25.7   0.0    6.7  7  HEAT_PBS   PBS lyase HEAT-like repeat
    3.4e-13   48.6   3.1        0.1   12.9   0.0    6.0  6  HEAT       HEAT repeat
    1.9e-05   24.8   0.1       0.22   11.5   0.0    4.2  6  Cnd1       non-SMC mitotic condensation complex subunit 1
    2.3e-05   24.8   2.0        1.5    9.4   0.2    5.2  5  HEAT_EZ    HEAT-like repeat
  ------ inclusion threshold ------
      0.076   11.6   0.3        3.4    6.1   0.0    2.8  3  Adaptin_N  Adaptin N terminal region


Domain annotation for each model (and alignments):
>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.6   2.8e-18   8.4e-15      10      88 .]      68     148 ..      59     148 .. 0.92
   2 ?    5.1   0.0      0.01        31      16      45 ..     201     230 ..     185     232 .. 0.77
   3 !   64.0   0.0   4.1e-21   1.2e-17       2      87 ..     219     304 ..     218     305 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 2.8e-18
      HEAT_2  10 ndpdpevrraairaLgrignpealpaLvell..ededpavRraaaeaLgaigdpealpaLkellddddddvvReaAaeaLa 88 
                  d+++ ++++++ +Lg+ +n ++ ++L++++   d+ p+vR++aaeaLga+g + al+ L+++l++d+++ v++ A+ a+a
  CCD24464.1  68 GDKSELLKHEVAYVLGQTKNMDSTDILRKVMldADQQPMVRHEAAEALGALGAQVALEDLQKCLKEDPHPAVQQTAELAIA 148
                 699999***********************99666677***************************************99985 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.01
      HEAT_2  16 vrraairaLgrignpealpaLvellededp 45 
                  r++a   L ++g++ea++aL +   d++p
  CCD24464.1 201 ERYRAMFRLRDLGSTEAIDALASGFADPSP 230
                 58999999*************998888887 PP

  == domain 3  score: 64.0 bits;  conditional E-value: 4.1e-21
      HEAT_2   2 daLlqalendpdpevrraairaLgrignpealpaLvell.e.dedpavRraaaeaLgaigdpealpaLkellddddddvvReaAaeaL 87 
                 daL +    dp+p  +++++ + g++gnp a+p+Lve+l +  e p+vR++aaeaLgai++pe++p+Lk++l+ d++dvvRe+A+ aL
  CCD24464.1 219 DALASGF-ADPSPLFKHEIAYVFGQMGNPLAVPCLVEVLgRmEEAPMVRHEAAEALGAIATPEVVPVLKQYLN-DEVDVVRESAIVAL 304
                 5666666.7******************************742577*************************995.7899*******998 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.11   3.2e+02       3      26 ..      76      99 ..      74     100 .. 0.86
   2 !   24.8   0.7   6.7e-09     2e-05       1      26 [.     107     132 ..     107     133 .. 0.97
   3 ?    0.4   0.1      0.52   1.6e+03      15      27 .]     182     194 ..     145     194 .. 0.54
   4 !   11.8   0.1    0.0001      0.31       2      24 ..     202     224 ..     201     227 .. 0.90
   5 ?    1.6   0.0      0.21   6.4e+02       3      25 ..     234     256 ..     233     258 .. 0.85
   6 !   25.7   0.0   3.5e-09   1.1e-05       1      27 []     265     291 ..     265     291 .. 0.97
   7 ?   -2.3   0.0       3.7   1.1e+04       1       9 [.     296     304 ..     296     305 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.11
                HHHHHHHHHCTSGGGHHHHHHHCT CS
    HEAT_PBS  3 raAakaLgqlgdeeaipaLleaLq 26
                ++ a+ Lgq +  ++ ++L+++  
  CCD24464.1 76 HEVAYVLGQTKNMDSTDILRKVML 99
                789*********999999999875 PP

  == domain 2  score: 24.8 bits;  conditional E-value: 6.7e-09
                 HHHHHHHHHHHCTSGGGHHHHHHHCT CS
    HEAT_PBS   1 vRraAakaLgqlgdeeaipaLleaLq 26 
                 vR++Aa+aLg+lg++ a++ L+++L+
  CCD24464.1 107 VRHEAAEALGALGAQVALEDLQKCLK 132
                 9************************8 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.52
                 GGGHHHHHHHCTC CS
    HEAT_PBS  15 eeaipaLleaLqd 27 
                 + +ip L+ +L+d
  CCD24464.1 182 QMSIPDLQTLLND 194
                 5567777777765 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.0001
                 HHHHHHHHHHCTSGGGHHHHHHH CS
    HEAT_PBS   2 RraAakaLgqlgdeeaipaLlea 24 
                 R++A++ L  lg++eai+aL   
  CCD24464.1 202 RYRAMFRLRDLGSTEAIDALASG 224
                 9*******************765 PP

  == domain 5  score: 1.6 bits;  conditional E-value: 0.21
                 HHHHHHHHHCTSGGGHHHHHHHC CS
    HEAT_PBS   3 raAakaLgqlgdeeaipaLleaL 25 
                 ++ a+  gq+g + a+p L+e+L
  CCD24464.1 234 HEIAYVFGQMGNPLAVPCLVEVL 256
                 678999******99999888877 PP

  == domain 6  score: 25.7 bits;  conditional E-value: 3.5e-09
                 HHHHHHHHHHHCTSGGGHHHHHHHCTC CS
    HEAT_PBS   1 vRraAakaLgqlgdeeaipaLleaLqd 27 
                 vR++Aa+aLg++ ++e++p+L++ L+d
  CCD24464.1 265 VRHEAAEALGAIATPEVVPVLKQYLND 291
                 9***********************997 PP

  == domain 7  score: -2.3 bits;  conditional E-value: 3.7
                 HHHHHHHHH CS
    HEAT_PBS   1 vRraAakaL 9  
                 vR +A+ aL
  CCD24464.1 296 VRESAIVAL 304
                 899999998 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     5e-05      0.15       8      28 ..      98     119 ..      94     122 .. 0.87
   2 !    6.5   0.0     0.004        12       5      27 ..     127     150 ..     124     150 .. 0.88
   3 ?   -1.3   0.0       1.3   3.8e+03       3      12 ..     186     195 ..     185     200 .. 0.80
   4 ?   -1.3   0.0       1.3   3.8e+03       3      27 ..     219     243 ..     217     244 .. 0.74
   5 !   11.1   0.0   0.00013      0.39      12      28 ..     261     277 ..     249     278 .. 0.87
   6 !   12.9   0.0   3.4e-05       0.1       1      24 [.     281     304 ..     281     306 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 5e-05
                 HH.T-SSHHHHHHHHHHHHHHH CS
        HEAT   8 ll.sDpspeVReaAakaLgala 28 
                 +l  D+ p VR  Aa+aLgal 
  CCD24464.1  98 MLdADQQPMVRHEAAEALGALG 119
                 56679***************96 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.004
                 HHHHH.T-SSHHHHHHHHHHHHHH CS
        HEAT   5 llkll.sDpspeVReaAakaLgal 27 
                 l+k+l +Dp+p V ++A +a++++
  CCD24464.1 127 LQKCLkEDPHPAVQQTAELAIARI 150
                 899**9***********8888876 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.3
                 HHHHHHHT-S CS
        HEAT   3 PlllkllsDp 12 
                 P l++ll+D+
  CCD24464.1 186 PDLQTLLNDQ 195
                 77999****6 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 1.3
                 HHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgal 27 
                 ++l +   Dpsp      a+ +g++
  CCD24464.1 219 DALASGFADPSPLFKHEIAYVFGQM 243
                 5677888899998777777777775 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 0.00013
                 SSHHHHHHHHHHHHHHH CS
        HEAT  12 pspeVReaAakaLgala 28 
                 ++p VR  Aa+aLga+a
  CCD24464.1 261 EAPMVRHEAAEALGAIA 277
                 789*************8 PP

  == domain 6  score: 12.9 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaL 24 
                 ++P+l + l+D+   VRe+A+ aL
  CCD24464.1 281 VVPVLKQYLNDEVDVVRESAIVAL 304
                 589*****************9887 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.4   4.2e+03      57      82 ..      15      40 ..       9      67 .. 0.64
   2 ?    1.2   0.0      0.11   3.4e+02      68      82 ..     101     115 ..      53     123 .. 0.67
   3 !   10.1   0.0    0.0002       0.6      35      88 ..     105     153 ..      89     173 .. 0.60
   4 !   11.5   0.0   7.4e-05      0.22      23      86 ..     124     189 ..     120     218 .. 0.76
   5 ?   -3.2   0.0       2.5   7.3e+03      23      48 ..     218     243 ..     215     250 .. 0.78
   6 !    6.0   0.0    0.0036        11       2      45 ..     265     304 ..     260     315 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.4
        Cnd1 57 kgflselaklleDenprVvanalaal 82
                ++ l++l+++l ++++  ++  +a++
  CCD24464.1 15 ENNLEQLRDILVNKDSVLSNRFRALF 40
                33466666666666654444444433 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.11
        Cnd1  68 eDenprVvanalaal 82 
                  D++p+V+  a  al
  CCD24464.1 101 ADQQPMVRHEAAEAL 115
                 444455554444444 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.0002
        Cnd1  35 pyVRktaaivvakLilndmvkekgflselakll.eDenprVvanalaalteisek 88 
                 p+VR  aa ++  L  +        l++l+k+l eD++p V++ a +a+  i+ +
  CCD24464.1 105 PMVRHEAAEALGALGAQ------VALEDLQKCLkEDPHPAVQQTAELAIARINWE 153
                 55555555555554322......23556667776677777777777766666543 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 7.4e-05
        Cnd1  23 vepLrkrLk.DedpyVRktaaivvakL.ilndmvkekgflselaklleDenprVvanalaalteis 86 
                 +e+L+k+Lk D++p V++ta +++a++  ++    e++ l+e + + +D+ p  +  +++++ +++
  CCD24464.1 124 LEDLQKCLKeDPHPAVQQTAELAIARInWEHSPAHESERLQESLYCSTDPAPPLSLETQMSIPDLQ 189
                 678888886588999999999999999888888888888888888888887776666666655555 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 2.5
        Cnd1  23 vepLrkrLkDedpyVRktaaivvakL 48 
                 ++ L +++ D++p  +   a+v+ ++
  CCD24464.1 218 IDALASGFADPSPLFKHEIAYVFGQM 243
                 67899999999999888888877665 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.0036
        Cnd1   2 iRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivv 45 
                 +R  a  +lg+i  p++    v+ L++ L+De   VR+ a++++
  CCD24464.1 265 VRHEAAEALGAIATPEV----VPVLKQYLNDEVDVVRESAIVAL 304
                 56666666666666654....46788888888888888888765 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.12   3.5e+02       3      54 ..      34      84 ..      33      84 .. 0.59
   2 !    6.7   0.2    0.0036        11       1      33 [.     105     127 ..     105     150 .. 0.59
   3 ?   -1.6   0.0       1.4   4.1e+03      28      43 ..     216     231 ..     210     243 .. 0.69
   4 !    6.6   0.1    0.0037        11      29      55 .]     248     276 ..     246     276 .. 0.71
   5 !    9.4   0.2    0.0005       1.5       1      52 [.     263     304 ..     263     304 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.12
     HEAT_EZ  3 vRraAawaLGr....laggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54
                +R+ A+ +L +        +p + +++v+ +   ++    d+s + +  +a+ Lg+
  CCD24464.1 34 NRFRALFNLKCvaeqFK-INPSDAKKAVDYMAETFG----DKSELLKHEVAYVLGQ 84
                68888888877333333.456666655555555555....4444558888888876 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0036
     HEAT_EZ   1 wrvRraAawaLGr......laggepellqplvpeilpaL 33 
                 + vR+ Aa aLG+      l                  L
  CCD24464.1 105 PMVRHEAAEALGAlgaqvaL----------------EDL 127
                 67999999999975533221................222 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.4
     HEAT_EZ  28 eilpaLlalLnddsde 43 
                 e+++aL+++  d+s++
  CCD24464.1 216 EAIDALASGFADPSPL 231
                 7788888888888776 PP

  == domain 4  score: 6.6 bits;  conditional E-value: 0.0037
     HEAT_EZ  29 ilpaLlalL..nddsdeVRaaAagaLgnl 55 
                 ++p+L+  L  + + ++VR  Aa aLg++
  CCD24464.1 248 AVPCLVEVLgrMEEAPMVRHEAAEALGAI 276
                 68888865543335559999999999986 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.0005
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeV.RaaAagaL 52 
                 + vR+ Aa aLG++a   pe ++    ++  +L      d+ +V R+ A+ aL
  CCD24464.1 263 PMVRHEAAEALGAIA--TPEVVP----VLKQYLN-----DEVDVvRESAIVAL 304
                 679*********888..333333....3333333.....44455599988887 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.2     6e+02     399     428 ..      19      48 ..       8      99 .. 0.45
   2 ?    6.1   0.0    0.0011       3.4     115     161 ..     123     167 ..     102     197 .. 0.79
   3 ?    1.8   0.0     0.023        69     101     138 ..     271     304 ..     257     314 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.2
                 HHHHHHHHHSTTTSTTCHHHHCCTCCGXXS CS
   Adaptin_N 399 evirdliqkvpelheeiiekLaellekies 428
                 e++rd++++++++  +  + L++l +  e+
  CCD24464.1  19 EQLRDILVNKDSVLSNRFRALFNLKCVAEQ 48 
                 555555555554444444444444433222 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0011
                 HHHHHHHHHT.-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCT CS
   Adaptin_N 115 lapaikkllk.drspyvrkkAalailklykkdpdllrkqlveeikell 161
                  +++++k+lk d++p v+++A lai+++    + +  ++  e+++e+l
  CCD24464.1 123 ALEDLQKCLKeDPHPAVQQTAELAIARINWEHSPA--HE-SERLQESL 167
                 57889999999999999999999999986555544..34.45666555 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.023
                 HHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHH CS
   Adaptin_N 101 rvLssirvpelaedlapaikkllkdrspyvrkkAalai 138
                  +L+ i +pe+    +p +k+ l+d+  +vr +A++a+
  CCD24464.1 271 EALGAIATPEV----VPVLKQYLNDEVDVVRESAIVAL 304
                 55555655554....56789999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.29s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2295.59
//
Query:       CCD24465.1  [L=383]
Description: hypothetical protein NDAI_0D01510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-81  272.5   0.2      5e-81  272.0   0.2    1.2  1  ATP_bind_1   Conserved hypothetical ATP binding protein
      1e-07   31.7   0.3    2.1e-06   27.4   0.2    2.8  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    2.3e-05   24.4   0.0     0.0032   17.5   0.0    3.4  2  MMR_HSR1     50S ribosome-binding GTPase
    5.9e-05   23.3   0.0    0.00013   22.2   0.0    1.6  1  AAA_33       AAA domain
    8.9e-05   22.3   0.1    0.00027   20.7   0.0    1.8  2  AAA_24       AAA domain
     0.0003   20.6   0.1      0.014   15.1   0.0    2.7  2  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
    0.00049   19.2   0.0       0.44    9.5   0.0    2.3  2  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
    0.00062   19.7   0.0     0.0011   18.9   0.0    1.4  1  NACHT        NACHT domain
    0.00076   19.3   0.0        1.6    8.5   0.0    2.5  2  CLP1_P       mRNA cleavage and polyadenylation factor CLP1 P-
    0.00092   18.9   0.0      0.048   13.3   0.0    2.4  2  SRP54        SRP54-type protein, GTPase domain
     0.0016   18.0   0.1      0.034   13.7   0.0    2.3  2  FeoB_N       Ferrous iron transport protein B
     0.0021   18.0   0.2        2.7    7.9   0.2    3.5  2  RsgA_GTPase  RsgA GTPase
     0.0028   17.1   0.4       0.31   10.5   0.0    2.5  2  SRPRB        Signal recognition particle receptor beta subuni
     0.0037   17.5   0.0      0.014   15.6   0.0    2.0  1  AAA_22       AAA domain
     0.0072   15.9   0.0      0.018   14.6   0.0    1.6  1  AAA_7        P-loop containing dynein motor region
     0.0095   16.3   0.0      0.021   15.2   0.0    1.6  1  AAA_16       AAA ATPase domain
  ------ inclusion threshold ------
       0.01   16.0   0.1       0.67   10.2   0.0    2.7  3  Roc          Ras of Complex, Roc, domain of DAPkinase
       0.01   16.4   0.6      0.034   14.7   0.0    2.2  2  AAA_18       AAA domain
      0.014   15.1   0.0      0.049   13.4   0.0    1.9  2  PRK          Phosphoribulokinase / Uridine kinase family
      0.023   13.9   0.0      0.058   12.6   0.0    1.6  1  NB-ARC       NB-ARC domain
      0.026   14.3   0.0      0.043   13.5   0.0    1.3  1  AAA_30       AAA domain
      0.027   13.9   1.8        1.1    8.7   0.0    3.1  3  Arf          ADP-ribosylation factor family
      0.044   13.9   0.4        5.3    7.1   0.0    2.4  2  DUF87        Helicase HerA, central domain
      0.046   13.2   0.0      0.088   12.2   0.0    1.5  1  KTI12        Chromatin associated protein KTI12
      0.054   13.1   0.3       0.52    9.9   0.3    2.3  1  cobW         CobW/HypB/UreG, nucleotide-binding domain
      0.058   13.5   2.6        9.8    6.2   0.2    3.2  2  Dynamin_N    Dynamin family
      0.059   12.6   0.3       0.42    9.9   0.3    2.1  1  Septin       Septin
      0.085   12.8   0.1        1.8    8.4   0.1    2.3  1  AAA_31       AAA domain
      0.087   12.7   0.1        2.7    7.9   0.1    2.2  2  NTPase_1     NTPase
        2.8    8.3   5.3       0.39   11.1   0.9    1.8  1  ATP-synt_E   ATP synthase E chain


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.0   0.2   8.4e-84     5e-81       1     240 [.       8     257 ..       8     258 .. 0.98

  Alignments for each domain:
  == domain 1  score: 272.0 bits;  conditional E-value: 8.4e-84
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmedlglgpngalvvaleflresldwldeeleke.ed.dyllfD 97 
                 ++G+aGsGKttf+++l+++l++++++++v+NLDPA+ ++pY a++dir+ i++++vme+++lgpnga+v++l+++++++d++ + +ek+ e+ +++++D
  CCD24465.1   8 CIGMAGSGKTTFMQRLNSHLRTKKTPPYVINLDPAVLKIPYGANIDIRDSIKYKKVMENYQLGPNGAIVTSLNLFSTKIDQVIKLVEKKkEKyNHCIID 106
                 59************************************************************************************999666899**** PP

  ATP_bind_1  98 tPGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkeklekeleffedvealslllekee.. 194
                 tPGQie+f +s+s+a+i+e+++s+f++v+ y+vD++r t+pt+f+s++l+a+s++++++lP++vv+nk D+ +  ++++ ++++d+e+++++  +++  
  CCD24465.1 107 TPGQIECFVWSASGAIITESFASTFPTVIAYIVDTPRNTSPTTFMSNMLYACSILYKTKLPMIVVFNKNDVTN--ADFAKDWMTDFESFQRAVRDDQel 203
                 ***********************************************************************77..******************99999* PP

  ATP_bind_1 195 ........ekykklaeaiaelleefalvlrflplssekeesiedllslidealq 240
                         +++++l ++++ +leef+ +l+++ +ss ++e+++d+l+++d++++
  CCD24465.1 204 ngdlgmgsGYMSSLINSMSLMLEEFYSQLDMVSVSSFTGEGFDDFLTAVDNKVD 257
                 **************************************************9876 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.2   3.6e-09   2.1e-06       5     192 ..       5     256 ..       1     258 [. 0.66

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 3.6e-09
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST.....................HCHSHHHHHHTSCSSCEEEEEE.........TTCSSEEEE CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv.....................lDtlkeErergiTiksaaisle.........ketkkylin 73 
                 +++ ig   +GKtT++ rL  ++ + +    + + + +                     + + +   +  i  + +  s++         k+++ky+  
  CCD24465.1   5 TVICIGMAGSGKTTFMQRLNSHLRTKKTPPYVINLDPAvlkipyganidirdsikykkvMENYQLGPNGAIVTSLNLFSTKidqviklveKKKEKYNHC 103
                 567778888888888888887777776666666411112344444444444444444444444444444444444444444889998886699999999 PP

                 EEEESSSGG.GHHHHHHH......HHT-SEEE.EEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH...... CS
    GTP_EFTU  74 liDtPGHvd.Fskevirg......lrvlDgav.lvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk...... 153
                 +iDtPG ++ F+   + +      +++   ++  +vd  +       +++      ++ k ++p+iv+ NK D ++a++ +   +  ++++r       
  CCD24465.1 104 IIDTPGQIEcFVWSASGAiitesfASTFPTVIaYIVDTPRNtspttFMSNMLYACSILYKTKLPMIVVFNKNDVTNADFAKDWMTDFESFQRAvrddqe 202
                 ********98887766654444443444444415777776655555777777788889999999***********999988887777788666566566 PP

                 ...............HHHHHHHHHTTT..........TTEEEEEEBTTTTBTHHHHHHHHHHHS CS
    GTP_EFTU 154 ...............eeklekygekge..........kevpvvfgSalkgegvktllealvell 192
                                           +          ++  +v +S+++geg++++l a+++++
  CCD24465.1 203 lngdlgmgsgymsslI----------NsmslmleefySQLDMVSVSSFTGEGFDDFLTAVDNKV 256
                 6666666655555541..........04445555555789********************9876 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.4e-06    0.0032       2     114 .]       6     174 ..       5     174 .. 0.65
   2 ?    0.5   0.0         1     6e+02      47      63 ..     346     362 ..     321     381 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.4e-06
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE....ETTEE................................................. CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk....lkgke................................................. 47 
                 v+++G+  +GK+t++++l   + +++++p   ++   + +k        +                                                 
  CCD24465.1   6 VICIGMAGSGKTTFMQRLNS-HLRTKKTPPYVINLDPAVLKipygA---Nidirdsikykkvmenyqlgpngaivtslnlfstkidqviklvekkkeky 100
                 7899*************954.4555555544444444444322220...13344445555566666677777777777777777777777777777777 PP

                 .EEEEECGGCSS...HHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHHHHHHHH......TTSEEEEEEES CS
    MMR_HSR1  48 .ielvDtpGlie...gaseekglgkaflaleeadlillvvdaseeklkpldeeleellee......akkplilvlnk 114
                    ++DtpG ie    + ++  ++++f++     +i+++vd   ++ +p    + ++l        +k p+i+v+nk
  CCD24465.1 101 nHCIIDTPGQIEcfvWSASGAIITESFASTFP-TVIAYIVDTP-RNTSPT-TFMSNMLYAcsilykTKLPMIVVFNK 174
                 79*******88766666667789999997554.9*******65.323333.444444433444444999*******8 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1
                 EEEEEECGGCSSHHHHH CS
    MMR_HSR1  47 eielvDtpGliegasee 63 
                 ei+  DtpGl ++ +e 
  CCD24465.1 346 EITEKDTPGLQKRYQEA 362
                 566679***53322222 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.1e-07   0.00013       2      78 ..       6     108 ..       5     145 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.1e-07
      AAA_33   2 vllvGlpGsGKstlaerl.....lkklgavllssdt..................lrrrlfgtdqqskt..........dytrvldrlyqilnelarkal 67 
                 v+++G++GsGK+t+ +rl      kk++ ++++ d                   +++ +++                  ++ +++++ q + +l++k+ 
  CCD24465.1   6 VICIGMAGSGKTTFMQRLnshlrTKKTPPYVINLDPavlkipyganidirdsikYKKVMEN------YqlgpngaivtSLNLFSTKIDQVI-KLVEKKK 97 
                 799***************7776666666999999996777777777775555543333333......133333445523344556677777.9999999 PP

      AAA_33  68 sagrnvildat 78 
                 ++ +++i+d +
  CCD24465.1  98 EKYNHCIIDTP 108
                 99999999987 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   4.6e-07   0.00027       5      81 ..       6     115 ..       3     121 .. 0.79
   2 ?   -2.2   0.0       4.9   2.9e+03     176     189 ..     255     277 ..     210     285 .. 0.52

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 4.6e-07
      AAA_24   5 iliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdie.............swedfldevvel.......................a 60 
                 ++++G +g+GKTt++ +l       +  p +i+++  + ++      di+                                                +
  CCD24465.1   6 VICIGMAGSGKTTFMQRLnshlrtkKTPPYVINLDPAVLKIPYGANIDIRdsikykkvmenyqL----------GpngaivtslnlfstkidqviklvE 94 
                 6789********************9999********9999988888889877744444444440..........36666666666666666666999** PP

      AAA_24  61 aeladyktlviDtideleelc 81 
                 +++++y+  +iDt +++e ++
  CCD24465.1  95 KKKEKYNHCIIDTPGQIECFV 115
                 *************99987655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.9
      AAA_24 176 d.........kvgervlktskse 189
                 +         ++ er+lk+++++
  CCD24465.1 255 KvdeyeeyykAERERILKAKEEK 277
                 03233333344444444444444 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.4e-05     0.014       1      31 [.       3      32 ..       3      59 .. 0.81
   2 ?    2.7   0.0      0.16        98      35      65 ..      99     130 ..      70     187 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.4e-05
   PduV-EutP  1 mkkilliGkvgsGKttLtqalkgeelkYkkt 31
                m+ ++ iG  gsGKtt +q+l+  +l+ kkt
  CCD24465.1  3 MSTVICIGMAGSGKTTFMQRLNS-HLRTKKT 32
                789******************75.6777777 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.16
   PduV-EutP  35 efsdeviDtPGeylenrkl..ysalivtsaead 65 
                 ++++ +iDtPG+  e   +  + a+i+ s+ + 
  CCD24465.1  99 KYNHCIIDTPGQI-ECFVWsaSGAIITESFAST 130
                 4566789***984.3333311445666555554 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00073      0.44      35      68 ..       9      42 ..       3     111 .. 0.90
   2 !    7.5   0.0    0.0031       1.8     171     258 ..     169     285 ..     164     293 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00073
                EE-TTSSHHHHHHHHHHHHHCTT--EEEEEE--- CS
        MeaB 35 tGvPGaGkstlvealglelrrrGkrvavlavDPs 68
                 G+ G+Gk t++++l  +lr + +   v+ +DP+
  CCD24465.1  9 IGMAGSGKTTFMQRLNSHLRTKKTPPYVINLDPA 42
                699********************9999*****97 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0031
                 EEEEE---HHHHHHHHHHHHHHHHHCST.............................TBTTB--EEEEEBCCCTBSHHHHHHHHHHHHHHHHHTTHHHH CS
        MeaB 171 iivvnkaDkkeaekaarelraaleleee.............................kekeWrpkvlktsavegeGidelvdaieehrevlkktGllek 240
                 i+v nk+D ++a+ a+ +++   + ++                              +e   +  ++ +s+ +geG d++++a+ +  +  ++  + e+
  CCD24465.1 169 IVVFNKNDVTNADFAKDWMTDFESFQRAvrddqelngdlgmgsgymsslinsmslmlEEFYSQLDMVSVSSFTGEGFDDFLTAVDNKVDEYEEYYKAER 267
                 8999****999999999998888888778889999999999999*999999999875555567789999***********9999988888888877777 PP

                 HHHHHHHHHHHHHHHHHH CS
        MeaB 241 rrrerakeelrelvedel 258
                  r  +akee  +l +d+ 
  CCD24465.1 268 ERILKAKEEKEKLRKDKS 285
                 776677776666666655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.9e-06    0.0011       2      30 ..       5      33 ..       4      41 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.9e-06
                CEEEEC-TTTCHHHHHHHHHHHHCTS-SC CS
       NACHT  2 lvilqGeaGsGKTtLlqklalawaegklp 30
                +vi  G aGsGKTt++q+l + ++++k p
  CCD24465.1  5 TVICIGMAGSGKTTFMQRLNSHLRTKKTP 33
                8999*****************99998865 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0     0.003       1.8       1      33 [.      10      42 ..      10      49 .. 0.87
   2 !    8.5   0.0    0.0027       1.6      83     115 ..      81     112 ..      68     147 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.003
      CLP1_P  1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvG 33
                G   sGK+T+++ L   +  k+  p +++lD+ 
  CCD24465.1 10 GMAGSGKTTFMQRLNSHLRTKKTPPYVINLDPA 42
                5678**********999888888889*****95 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0027
      CLP1_P  83 lvkelareveekleenkkakasgliIntpGwvk 115
                 l++  +++v  kl e+kk k +++iI+tpG ++
  CCD24465.1  81 LFSTKIDQVI-KLVEKKKEKYNHCIIDTPGQIE 112
                 4444555555.344467999**********987 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   8.1e-05     0.048       3      38 ..       5      40 ..       3      42 .. 0.90
   2 ?    3.1   0.0      0.11        65      75      95 ..      92     111 ..      74     114 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.1e-05
                EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEES CS
       SRP54  3 villvGlqGaGKTttlaKLaallkkegkkvllvaaD 38
                 ++ +G+ G+GKTt + +L  +l+++++ + ++ +D
  CCD24465.1  5 TVICIGMAGSGKTTFMQRLNSHLRTKKTPPYVINLD 40
                57889*********************9999998887 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.11
                 HHHHHHHTTSSEEEEEE--SS CS
       SRP54  75 avekakeekidvvlvDTaGrl 95 
                  ve +k+ek+++ ++DT G+ 
  CCD24465.1  92 LVE-KKKEKYNHCIIDTPGQI 111
                 444.466699********986 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.29   1.7e+02       2      21 ..       5      24 ..       4      30 .. 0.87
   2 !   13.7   0.0   5.8e-05     0.034      42     120 ..      95     180 ..      81     191 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.29
                EEEEEESTTSSHHHHHHHHH CS
      FeoB_N  2 tvalvGnpnvGkttlfnalt 21
                tv+++G   +Gktt++ +l 
  CCD24465.1  5 TVICIGMAGSGKTTFMQRLN 24
                6899************9985 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 5.8e-05
                 EEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEG.......GGHHHHHHHHHHHHHTTSSEEEEEETHHHHHH CS
      FeoB_N  42 lklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvda.......tnlernLyLtlqllelgvpvvlalnmideaek 120
                  k ++++  i+D PG  +    s    + ++ ++++ p v+  +vd+       t +   Ly    l  +++p+++++n+ d+ ++
  CCD24465.1  95 KKKEKYNHCIIDTPGQIECFVWSASGAIITESFASTFPTVIAYIVDTprntsptTFMSNMLYACSILYKTKLPMIVVFNKNDVTNA 180
                 344668899*************************************7333333245778899999999*************98765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.2    0.0045       2.7     100     125 ..       4      29 ..       1     115 [. 0.84
   2 ?    5.8   0.0      0.02        12      42      77 ..     161     195 ..     134     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0045
                  SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelel 125
                  +t++ +G  G GK+t++ +l+++l++
   CCD24465.1   4 STVICIGMAGSGKTTFMQRLNSHLRT 29 
                  688999**************998433 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.02
                  HHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTS CS
  RsgA_GTPase  42 aeekgiepvivlnKiDlleeeeeleelkeelealgy 77 
                  + ++++++++v+nK D+++ +  ++++++++e+++ 
   CCD24465.1 161 LYKTKLPMIVVFNKNDVTNADF-AKDWMTDFESFQR 195
                  568999************9998.8999888887755 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00051      0.31       4      30 ..       4      31 ..       1      44 [. 0.83
   2 ?    4.3   0.1      0.04        24      44     130 ..      95     183 ..      75     198 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00051
                -EEEEE-STTSSHHHHHHHHHHS.S--- CS
       SRPRB  4 pavllvGlsdsGKTslftrLttd.svkk 30
                 +v+ +G+  sGKT++++rL +   +kk
  CCD24465.1  4 STVICIGMAGSGKTTFMQRLNSHlRTKK 31
                689*****************98844444 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.04
                 ...GGTT-SEEEETT-GC.CSHHHHHHHHHHGGEEE....EEEEEETTS-HHHHHHHHHHHHHHHHH.HHHHTT---EEEEEE-TTSTT---H CS
       SRPRB  44 ksekgskltliDfPGhek.lrqklleklkaksslkg....lvfvvDStidpkevkevAEllyeilli.teklkdavdiliACnKqelflaksp 130
                 k++++ +  +iD PG+ + +    +  ++++s + +    + ++vD   +    ++   ++ ++l   +++ k ++++++  nK++++ a  +
  CCD24465.1  95 KKKEKYNHCIIDTPGQIEcFVWSASGAIITESFASTfptvIAYIVDTPRN----TSPTTFMSNMLYAcSILYKTKLPMIVVFNKNDVTNADFA 183
                 44667778899999985414444444555444444401115566665444....4444555555554144458999**********9988655 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.4e-05     0.014       8      38 ..       6      39 ..       2     105 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.4e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleqldeeakaee...e 38
                ++++G +G+GKTt ++rl + l   + + +    
  CCD24465.1  6 VICIGMAGSGKTTFMQRLNSHLRTKKTPPYvinL 39
                79*****************999655444335544 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     3e-05     0.018      35      69 ..       5      39 ..       2      44 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3e-05
       AAA_7 35 pvllvGptGtGKtviikdllkkldkekylsltinf 69
                 v+++G +G+GKt+ +++l ++l ++k+ + +in+
  CCD24465.1  5 TVICIGMAGSGKTTFMQRLNSHLRTKKTPPYVINL 39
                699*************************9999997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.5e-05     0.021      25      69 ..       4      48 ..       2     138 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 3.5e-05
      AAA_16 25 elvllsGesGvGKsslvrellralekd..ggiflrgkcdqlesaipy 69
                + v+++G++G+GK++ +++l  +l+++    ++++ +   l  +ipy
  CCD24465.1  4 STVICIGMAGSGKTTFMQRLNSHLRTKktPPYVINLDPAVL--KIPY 48
                5799******************9999953367776666666..6666 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0011      0.67       2      28 ..       6      32 ..       5      56 .. 0.86
   2 ?    2.4   0.0      0.28   1.7e+02      55     119 ..     110     176 ..      74     177 .. 0.48
   3 ?    1.0   0.0      0.81   4.8e+02      79     104 ..     164     192 ..     152     196 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0011
                EEEESSTTSSHHHHHHCHCT-CCC-EE CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfseke 28
                v+++G +g+GKt++++r+ ++  ++k+
  CCD24465.1  6 VICIGMAGSGKTTFMQRLNSHLRTKKT 32
                799**************9987776665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.28
                 CEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE..GHHH..HCHHHHHHHHH.HHCSSS-EEEEEE-TT CS
         Roc  55 kvklniWDtaGqerfrslhplylreaalailvyd..srss..enlkeWlkelk.kvagkspvilvgnkiD 119
                 +++  +W  +G   ++s ++ + +  a +  ++d  +++s  + +++ l  ++  + +k p+i+v nk D
  CCD24465.1 110 QIECFVWSASGAIITESFASTFPTVIA-Y--IVDtpRNTSptTFMSNMLYACSiLYKTKLPMIVVFNKND 176
                 355555555555555555555544332.2..233222222112333333333313456779999999988 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.81
                 TSCEEEEEEEGHHH...HCHHHHHHHHHH CS
         Roc  79 eaalailvydsrss...enlkeWlkelkk 104
                  +  +i+v+++++    + +k+W++++++
  CCD24465.1 164 TKLPMIVVFNKNDVtnaDFAKDWMTDFES 192
                 34445566664433111445778877765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   5.7e-05     0.034       2      80 ..       7     106 ..       6     117 .. 0.52
   2 ?   -1.5   0.2       5.9   3.5e+03      46      66 ..     259     279 ..     202     310 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.7e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf...........................gvnlrdvakenglllevdpealdeskrldedkldklldaleenss.... 69 
                 +  G++G+GKtt+ ++L+++l                             +                    ++ +k+++  +l  +  ++   +     
  CCD24465.1   7 ICIGMAGSGKTTFMQRLNSHLRTkktppyvinldpavlkipyganidirdS--------------------IKYKKVMENYQLGPNGAIVTSLNLfstk 85 
                 557**************9998446777774444444343343333222221....................3333333333333333333333323333 PP

      AAA_18  70 ..........aleegknlvid 80 
                           + e+ ++++id
  CCD24465.1  86 idqviklvekKKEKYNHCIID 106
                 333333333334566666666 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 5.9
      AAA_18  46 ldeskrldedkldklldalee 66 
                 ++e+ ++++++  k+ ++ e+
  CCD24465.1 259 YEEYYKAERERILKAKEEKEK 279
                 344444444443333333333 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.2e-05     0.049       6      36 ..      10      40 ..       6      72 .. 0.86
   2 ?   -2.4   0.0       5.5   3.3e+03     159     177 ..      86     104 ..      83     108 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.2e-05
         PRK  6 gsSGaGkttvarklekifgrekvkaaeiegd 36
                g  G+Gktt++++l++ ++ +k ++ +i++d
  CCD24465.1 10 GMAGSGKTTFMQRLNSHLRTKKTPPYVINLD 40
                788****************999999988776 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 5.5
         PRK 159 leavldsilrrkpdyvnyi 177
                 +++v++ ++ +k++y+++i
  CCD24465.1  86 IDQVIKLVEKKKEKYNHCI 104
                 7889999999999999998 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   9.7e-05     0.058      23      46 ..       6      29 ..       2      38 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.7e-05
                EEEEESTTSSHHHHHHHHCCSHCC CS
      NB-ARC 23 valvGmgGvGKttlakqilnksde 46
                v   Gm+G+GKtt ++  ++++ +
  CCD24465.1  6 VICIGMAGSGKTTFMQRLNSHLRT 29
                5568*************9999655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   7.2e-05     0.043      20      45 ..       5      30 ..       1      42 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.2e-05
      AAA_30 20 vavltGpAGtGKttalkalreaweaa 45
                +++  G AG+GKtt ++ l+ +++++
  CCD24465.1  5 TVICIGMAGSGKTTFMQRLNSHLRTK 30
                57899**************9988776 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0018       1.1      17      46 ..       6      35 ..       2      69 .. 0.87
   2 ?    2.6   0.0      0.14        83     110     132 ..     160     182 ..     127     203 .. 0.69
   3 ?   -1.0   0.3       1.7     1e+03      92     135 ..     265     309 ..     259     316 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0018
                EEEEESTTSSHHHHHHHHHHSSCEECSSSS CS
         Arf 17 illlGLDnaGKtTilkklkleelvttvPTi 46
                ++ +G+ ++GKtT +++l+++  ++ +P  
  CCD24465.1  6 VICIGMAGSGKTTFMQRLNSHLRTKKTPPY 35
                7899***************99888777755 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.14
                 SGCCTTSEEEEEEE-TTSTTSS- CS
         Arf 110 eeelkevallvlaNKqDlpeals 132
                      + +++v+ NK D+++a  
  CCD24465.1 160 ILYKTKLPMIVVFNKNDVTNADF 182
                 444568899*********99865 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.7
                 T-CTTHHHHHHHHHHHCTSGCCTTSE.EEEEEE-TTSTTSS-HHH CS
         Arf  92 adreRleeakeeLkalleeeelkeva.llvlaNKqDlpealseee 135
                 a+reR+ +akee ++l +++ ++  +  l l  K+D +e+  ++e
  CCD24465.1 265 AERERILKAKEEKEKLRKDKSINGLMkDLGLNDKKDGNESDASAE 309
                 57899999**99999999998886541466777777776665555 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0088       5.3      29      52 ..       9      31 ..       5      42 .. 0.78
   2 ?    4.7   0.2     0.046        28     117     169 ..     260     311 ..     220     379 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0088
       DUF87 29 lgsTGsGKSntvavLleellekkg 52
                +g++GsGK++++  L + l  +k+
  CCD24465.1  9 IGMAGSGKTTFMQRLNSHLR-TKK 31
                69***********9988887.443 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.046
       DUF87 117 qrsvleealdqakakeekeklssdepveklleelkkekeelrklknqaiarll 169
                 ++ + +e  + +kakeekekl  d++++ l ++l   +++ + + ++a a+++
  CCD24465.1 260 EEYYKAERERILKAKEEKEKLRKDKSINGLMKDLG-LNDKKDGNESDASAEVI 311
                 223333333333447******************99.33333333333333333 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015     0.088       1      38 [.       3      40 ..       3      67 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
                E.EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH CS
       KTI12  1 MpLvvltGlPssGKstrakeLakaleeekrsvvvidde 38
                M  v+  G+  sGK+t+ ++L+++l+ +k   +vi+ +
  CCD24465.1  3 MSTVICIGMAGSGKTTFMQRLNSHLRTKKTPPYVINLD 40
                778999************************99999855 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00086      0.52       3     102 ..       6     119 ..       4     197 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00086
                 EEEEESTTCCHHHHHHHHH.....CT--....SS-EEEEESS-SSCHCC.CCCCHCCCT..EEEE.TTTTECCH...CTT-HHHHHHHHHHHHTT-SEE CS
        cobW   3 tvltGflGsGKTtLlnhll.....enra....glklavivNefgevsiD.aellretgve.ivel.enGciCct...lredllkelealeereerldvi 86 
                 ++  G  GsGKTt++++l      +++     +l+ av+   +g  +iD ++ ++ ++v+   +l  nG i  +    ++++ ++++ +e+++e++++ 
  CCD24465.1   6 VICIGMAGSGKTTFMQRLNshlrtKKTPpyviNLDPAVLKIPYG-ANIDiRDSIKYKKVMeNYQLgPNGAIVTSlnlFSTKIDQVIKLVEKKKEKYNHC 103
                 566799*********99986544311111122345566666666.555522333333222355552467766652223455555555556666777777 PP

                 EEEECTTTTHHHHHTT CS
        cobW  87 liEttGlaePapvaft 102
                 +i t G  e   +  +
  CCD24465.1 104 IIDTPGQIECFVWSAS 119
                 7777777776666334 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.2     0.016       9.8      83     111 ..      82     110 ..       6     142 .. 0.62
   2 ?    5.1   0.1     0.036        22      60     126 ..     251     370 ..     215     378 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.016
                 SSS--SS-EEEEEEETTS-SEEEEE---B CS
   Dynamin_N  83 nkgiskkvillkilsllvkgltlvDlPGl 111
                  ++  ++vi+l  ++  + +  ++D+PG 
  CCD24465.1  82 FSTKIDQVIKLVEKKKEKYNHCIIDTPGQ 110
                 23444569999999999999999999996 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.036
                 -EB--CHHHHHHHHHHHHHHHTSSSS--SS.....................................................-EEEEEEETTS-SEEE CS
   Dynamin_N  60 kkledfsevreeieketekiagankgiskk.....................................................villkilsllvkgltl 105
                 + +++++e++e++++e+e+i +a+++  k                                                        ++   + ++ ++t 
  CCD24465.1 251 AVDNKVDEYEEYYKAERERILKAKEEKEKLrkdksinglmkdlglndkkdgnesdasaevisdieagdgdglvdrdedegverEYTFPGEERTQGEITE 349
                 556677788888888888877544444333777888888888888888888888888889999999999999999999998777777777888888888 PP

                 EE---B-SSSGTTSHHHHHHH CS
   Dynamin_N 106 vDlPGldsvnkrdqelvkeyi 126
                  D+PGl+++ ++  e v +++
  CCD24465.1 350 KDTPGLQKRYQEALESVAKTA 370
                 9******99988876666555 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3    0.0007      0.42       6      71 ..       5     109 ..       2     147 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0007
                 EEEEEEBTTSSCCCCCCTTSSSS----........................................------------.....--S-EEEEEEEEETT CS
      Septin   6 tlmvvGesglGkttlintlfetdliee........................................ekleeasekkkk.....tveikkkkvvieedg 59 
                 t++++G  g Gktt+++ l ++  +++                                        +        + +     +++i++  +++e+++
  CCD24465.1   5 TVICIGMAGSGKTTFMQRLNSHLRTKKtppyvinldpavlkipyganidirdsikykkvmenyqlgpN------GAIVTslnlfSTKIDQVIKLVEKKK 97 
                 89**************9997766555556666666666666666666666666666666543332221......2222200011344555555566666 PP

                 CEEEEEEEE--- CS
      Septin  60 vklnltviDtpg 71 
                  k n  +iDtpg
  CCD24465.1  98 EKYNHCIIDTPG 109
                 666666666666 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0031       1.8      97     133 ..      79     115 ..       4     124 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0031
      AAA_31  97 lvelekkeeilkellekvkdeYDyiiiDcpPsLgllt 133
                 l  +++k +++ +l+ek k++Y  +iiD+p ++++++
  CCD24465.1  79 LNLFSTKIDQVIKLVEKKKEKYNHCIIDTPGQIECFV 115
                 33333444455689999999*********99988775 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0046       2.7       3      26 ..       7      30 ..       5      34 .. 0.85
   2 ?    2.5   0.0       0.2   1.2e+02      75     115 ..      80     119 ..      55     146 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0046
                EEE--TTSSHHHHHHHHHHHH... CS
    NTPase_1  3 fiTGppGvGKtTlvkkvlellkss 26
                +  G+ G+GKtT+++++ + l+ +
  CCD24465.1  7 ICIGMAGSGKTTFMQRLNSHLRTK 30
                5669*************9999876 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.2
                 EE-HHHHHHHHHHHHHHHHHHH-EEEE---STTGGG-HHHH CS
    NTPase_1  75 vvdvesfeelalealrkalseadviviDEiGkmElkskkfk 115
                  ++ ++++++ ++ ++k+ ++ + ++iD  G++E ++ + +
  CCD24465.1  80 NLFSTKIDQV-IKLVEKKKEKYNHCIIDTPGQIECFVWSAS 119
                 4555666665.888999999999***********9986655 PP

>> ATP-synt_E  ATP synthase E chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.9   0.00065      0.39      37      85 ..     255     301 ..     245     313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00065
  ATP-synt_E  37 kkeekereleaqekliekakaayakkkqakseakslaegssakiddedp 85 
                 k +e e+ ++a+++ i kak++++k +++ks ++ l+++  ++ d++d 
  CCD24465.1 255 KVDEYEEYYKAERERILKAKEEKEKLRKDKS-INGLMKDLGLN-DKKDG 301
                 5567788999********************9.99898888877.55554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1193  (0.0665402); expected 358.6 (0.02)
Passed bias filter:                      687  (0.0383178); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 2758.81
//
Query:       CCD24466.1  [L=270]
Description: hypothetical protein NDAI_0D01520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-55  187.1   2.3    2.6e-55  186.7   2.3    1.1  1  EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like


Domain annotation for each model (and alignments):
>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.7   2.3   1.5e-59   2.6e-55       1     169 [.      18     211 ..      18     212 .. 0.98

  Alignments for each domain:
  == domain 1  score: 186.7 bits;  conditional E-value: 1.5e-59
  EMC3_TMCO1   1 dlvldplirdwvllPivivillvgiltgllsellqkllidkkkmekeqkrekelqkrarelqkngdklklkklekrqeelmedqsem............ 87 
                 +l ldp++++wvllPi+iv++l+gil+++++ l+ ++l  k+   +++ +e+++  +a++l  ng++l+ +++e r+ +l +  se+            
  CCD24466.1  18 ELTLDPQLKYWVLLPISIVMVLTGILRQYITVLIGPKL--KT-EPRVKLTESQYIIKAQALLGNGSNLSTESFEIRKDYLVKILSEGkyvakanqsqeg 113
                 5789*********************************9..66.89****************************************************** PP

  EMC3_TMCO1  88 ..............mmdqmkpmivtmipqiliffwlnsffsgfvvaklpfpltgrfksllqrgl..esldvrfvssiswYflcsfglsqiirklLgea 169
                               mm ++k++++++ipq+li++w+n+ff+gfv++klpfplt rfk++lq+g+  ++ldvr+vssiswYf++++gl++++++lL e+
  CCD24466.1 114 qvpnpftdpnmsesMMAMAKGNLANFIPQTLIMWWVNHFFAGFVLMKLPFPLTLRFKEMLQSGImtSDLDVRWVSSISWYFISVVGLNPVYNLLLAEN 211
                 **********************************************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2220.79
//
Query:       CCD24467.1  [L=242]
Description: hypothetical protein NDAI_0D01530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1840.55
//
Query:       CCD24468.1  [L=1293]
Description: hypothetical protein NDAI_0D01540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.5e-105  351.2  38.8    5.6e-55  186.9  16.3    2.2  2  ABC_membrane     ABC transporter transmembrane region
    2.9e-64  215.7   0.8    2.4e-31  109.1   0.0    3.0  2  ABC_tran         ABC transporter
    3.5e-16   59.3   8.8    2.5e-06   27.1   0.0    5.1  4  SMC_N            RecF/RecN/SMC N terminal domain
    3.4e-11   43.5   0.3      1e-05   25.4   0.0    3.1  3  AAA_15           AAA ATPase domain
    1.3e-09   38.4   1.2     0.0016   18.7   0.1    3.7  2  AAA_22           AAA domain
      5e-09   36.8   0.1     0.0064   16.9   0.0    3.4  2  AAA_16           AAA ATPase domain
    2.2e-07   31.2   0.1      0.011   16.2   0.0    2.7  2  RNA_helicase     RNA helicase
    2.3e-07   30.0   1.0      0.018   13.8   0.0    3.4  4  ABC_ATPase       Predicted ATPase of the ABC class
    3.2e-07   30.0   8.5    0.00098   18.8   0.2    3.4  2  AAA_29           P-loop containing region of AAA domain
    3.3e-07   30.4   0.2      0.014   15.3   0.0    2.8  2  RsgA_GTPase      RsgA GTPase
    1.9e-06   28.1   3.0       0.13   12.4   0.0    3.7  3  DUF87            Helicase HerA, central domain
    9.4e-06   25.7   0.4        0.2   11.8   0.0    2.9  2  MMR_HSR1         50S ribosome-binding GTPase
    1.4e-05   24.9   0.1       0.19   11.4   0.0    3.6  3  AAA_30           AAA domain
    3.7e-05   23.7   0.0       0.64   10.0   0.0    3.5  3  AAA_5            AAA domain (dynein-related subfamily)
    4.6e-05   23.4   1.8        2.6    7.9   0.0    3.7  3  NACHT            NACHT domain
    0.00011   21.6   0.0       0.48    9.7   0.0    2.6  2  Zeta_toxin       Zeta toxin
    0.00012   22.6   0.1       0.44   11.1   0.0    3.4  2  AAA_18           AAA domain
    0.00016   21.7   0.0       0.11   12.4   0.0    2.4  2  Ploopntkinase3   P-loop Nucleotide Kinase3
    0.00029   20.6   1.3       0.36   10.5   0.0    2.7  2  AAA_24           AAA domain
    0.00054   19.3   0.4       0.14   11.4   0.0    2.5  2  Septin           Septin
    0.00055   20.5  11.7      0.038   14.5   0.1    3.4  2  AAA_23           AAA domain
     0.0008   19.2   0.0       0.78    9.4   0.0    2.6  2  Sigma54_activat  Sigma-54 interaction domain
    0.00083   19.1   0.0      0.088   12.5   0.0    2.5  2  PRK              Phosphoribulokinase / Uridine kinase family
     0.0011   18.1   1.3       0.54    9.3   0.1    2.8  3  T2SSE            Type II/IV secretion system protein
     0.0017   17.5   0.0       0.55    9.2   0.0    2.3  2  DUF3987          Protein of unknown function (DUF3987)
     0.0019   18.1   0.1        2.1    8.2   0.0    2.6  2  APS_kinase       Adenylylsulphate kinase
     0.0028   17.7   7.7       0.27   11.3   0.0    5.2  4  AAA_14           AAA domain
     0.0029   17.8   0.2       0.76    9.9   0.2    2.7  2  AAA_33           AAA domain
     0.0044   16.5   2.3          1    8.9   0.1    3.0  3  AAA_7            P-loop containing dynein motor region
     0.0053   17.0   0.7        5.4    7.3   0.0    3.4  3  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0055   16.0   0.0       0.35   10.0   0.0    2.5  2  KAP_NTPase       KAP family P-loop domain
  ------ inclusion threshold ------
      0.011   14.9   0.9          3    6.9   0.1    3.0  3  NB-ARC           NB-ARC domain
      0.013   15.3   0.7         12    5.6   0.0    3.4  3  ATP_bind_1       Conserved hypothetical ATP binding protein
      0.016   15.0  13.7       0.82    9.4   0.1    4.3  5  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
      0.017   14.8   0.0       0.78    9.4   0.0    2.4  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
      0.017   14.3   0.0       0.97    8.5   0.0    2.5  2  DUF815           Protein of unknown function (DUF815)
      0.039   13.8   0.8        5.8    6.8   0.1    2.9  2  MobB             Molybdopterin guanine dinucleotide synthesis
      0.046   12.6   0.1        4.6    6.0   0.0    2.4  2  AAA_10           AAA-like domain
      0.091   12.1   1.1         15    4.8   0.1    3.2  3  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.093   12.1   0.4         17    4.6   0.1    2.8  2  ATPase           KaiC
       0.18   11.9   0.2         12    6.0   0.1    2.7  2  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.2  14.5   1.6e-52   7.2e-50       1     270 [.      28     302 ..      28     306 .. 0.97
   2 !  186.9  16.3   1.3e-57   5.6e-55       3     272 ..     724     996 ..     722     998 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.2 bits;  conditional E-value: 1.6e-52
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHH CS
  ABC_membrane   1 liliillailagvlsplfplvlgrildtlldkgdpet.....ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsff 92 
                   ++lii+++i++g++  ++++++gr++d l+  g+ ++     ++l++ s+ +++l++a + +++++ + ++ +ger+ +++r++l++  l  pm+++
    CCD24468.1  28 ICLIIISTIANGLVPAITSILTGRVFDLLSNIGQFHSmneilSELTIRSMSIMALAAACLPVMWISISSWMSLGERQGFAIRKRLLNEYLVKPMEWY 124
                   589********************************************************************************************** PP

                   HH..SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  93 dt..nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEsl 187
                   d   +  G++ + +++ v+ lr++ +e   + fq+++ ++++++ +fy++w+ltl++l+ +pliil++++++++++k+++ e+++++ka +++++s+
    CCD24468.1 125 DChdKLLGDF-TQVNRCVEELRSSSAEASAITFQNFVAMLALIGTSFYYSWSLTLIILCSAPLIILFAILFSHMIHKYTELENSETGKAAQLLNWSM 220
                   **6666****.99************************************************************************************ PP

                   HTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHH.HH CS
  ABC_membrane 188 sgirtVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfa.il 270
                   +  + Vk+++ ++y+++ f++ + +++   ik++++ +++ +i+++l+l +++  +wfG+ +v++g+ls++d  v++++ + ++
    CCD24468.1 221 NSAQLVKLYCTQAYEIHSFKELVGQCNDLFIKSCFYVSANTSILRFLSLSMFVQGFWFGAIMVKKGKLSIKD--VITCFHScLM 302
                   ************************************************************************..9999998444 PP

  == domain 2  score: 186.9 bits;  conditional E-value: 1.3e-57
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHH.. CS
  ABC_membrane   3 liillailagvlsplfplvlgrildtlldkgdpet...ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdt.. 94 
                   ++i+ +++ag+++p+f+++++++l+ +++  + ++     l ++s ++l++ +a++i+++l+sy+l +++e ++++lr++++ +i++  + +f++  
    CCD24468.1 724 FGIFWSLIAGATNPIFSYCFSYLLNGIVPMTNGQYrsqLYLLKWSFIVLGISAADAISNFLKSYILGYCSELWIMDLRNEAMAAIMNKRLDWFSKee 820
                   789**************************98888888899********************************************************* PP

                   SCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH CS
  ABC_membrane  95 nsvGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgir 191
                   n+++el+++l nd+++lr++++e+l+ +++++++ ++gli+++++gwkl+lv+++++pliilvs +++++l++++  +++ava++ ++ +E+++ i+
    CCD24468.1 821 NKSSELSALLLNDLRDLRSLVSEFLSAMTTFIVVSLVGLIWALVSGWKLSLVCISMFPLIILVSGIYGSTLQRYETMYKTAVAELENHEYEIMTKIK 917
                   ************************************************************************************************* PP

                   HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHH CS
  ABC_membrane 192 tVkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfg 272
                   t++++ + +yf+++++   ++ kk++ k+ ia+g+ i+it+ ++ +++++ +++G  lv +ge+s+++  +f ++  +lf+
    CCD24468.1 918 TIRYLQASKYFIKNYKVLENNLKKIAHKRSIATGFGISITNTIAVCIQSILYYYGLRLVFKGEYSSKK--MFETFTLLLFT 996
                   ********************************************************************..88888888876 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.3     2e-32   8.8e-30       1     136 [.     373     531 ..     373     532 .. 0.86
   2 !  109.1   0.0   5.5e-34   2.4e-31       2     137 .]    1074    1222 ..    1073    1222 .. 0.89

  Alignments for each domain:
  == domain 1  score: 104.0 bits;  conditional E-value: 2e-32
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................esd 82 
                 lk+vs+++++g+ + i+G++G+GKStL++ll++ +++ +G+i++ ++++k++++++l ++i v++q  +lf+++ +r+n                 e  
  CCD24468.1 373 LKDVSITFQPGRSTFIIGKSGSGKSTLANLLLKFYNDYQGSIKIGNTNVKKINKNWLFENITVVEQRCTLFNDT-LRNNlllgisnsnqkveqddiE-- 468
                 79************************************************************************.9999******887666555552.. PP

                 TC............HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 ee............iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                               +e+++++l +    dt+++ ++ sLSgGq+qrva+ara +k++++l+lDE+ 
  CCD24468.1 469 -IsqrlkdacriamLEELIRELPD--GLDTIIGAGGVSLSGGQQQRVAIARAYIKDSSVLILDEAV 531
                 .03334444544445555555554..66************************************96 PP

  == domain 2  score: 109.1 bits;  conditional E-value: 5.5e-34
                  EEEEEEEETTS.EEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH........HHHTCHHHHH CS
                  xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxx RF
    ABC_tran    2 knvslklkege.kvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren........esdeeiekal 89  
                  kn++l++  ++ +++ivGe+G+GKStL+ ll++l+k  + +i +dg+d++e ++ +lrk+i+v++q+p+lf+++ vr+n         s+ ei+++l
  CCD24468.1 1074 KNITLHVTSSQkTIGIVGESGSGKSTLMYLLTKLYKTPANSIYIDGTDVNEWDTLKLRKQISVVEQNPTLFEGT-VRDNlvygtlndISEIEIYDVL 1169
                  78999987665168************************************************************.**********9999999***** PP

                  HHSTTGG.......TTCBGESTTS..GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxxxxx.......xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   90 sklglke.......lkdtvvkssp..ssLSgGqkqrvalarallkkpkllllDEpta 137 
                  + lg+ e         d++       + +SgGq qr+++arall+kp++l+lDE+t+
  CCD24468.1 1170 KYLGIYEfienlpmGLDSR----IdtKLVSGGQAQRLCIARALLRKPTILILDECTS 1222
                  *****99555544433333....144999**************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   1.6   2.3e-07    0.0001      18     202 ..     376     565 ..     371     577 .. 0.64
   2 ?    0.5   0.0      0.76   3.3e+02      92     141 ..     905    1014 ..     891    1023 .. 0.62
   3 !    7.4   0.2     0.006       2.6      13      41 ..    1073    1101 ..    1067    1107 .. 0.82
   4 !   27.1   0.0   5.7e-09   2.5e-06     104     212 ..    1108    1265 ..    1101    1271 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 2.3e-07
                 EEEETTSS.EEEEEESTTSSHHHHHHHH.HHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEEEEEE.........EETTEESSSSSSCEEEEEEEE CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  18 vilpfsks.ftaivGpNGSGKsnlldAi.lFvLGersakklrseklsdlihk.skekasvkkaeveitf.........dnedkklkiekeevsisrrvk 104
                 v++ f+++  t+i+G+ GSGKs l + + +F+   + + k+ +++++++ ++   e+  v + + +++            +++++k+e+++++is+r+k
  CCD24468.1 376 VSITFQPGrSTFIIGKSGSGKSTLANLLlKFYNDYQGSIKIGNTNVKKINKNwLFENITVVEQRCTLFNdtlrnnlllGISNSNQKVEQDDIEISQRLK 474
                 566666642689***********9997526888888887888888888776652233333333333322222222233222222335555555555554 PP

                 TTSEEEEEETTEEE-HHHHHHHHHCTT-STT...........CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 105 rkgeseykingkevtkkevsellesagiske...........lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQf 192
                    +    i   e   +e+           +           +LSgG+++ va+a       +k +++ +lDe  +aLD  +++ + + +k+ ++    
  CCD24468.1 475 DACR----IAMLEELIRELP----------DgldtiigaggvSLSGGQQQRVAIA----RAYIKDSSVLILDEAVSALDIIHRELIMKAIKNWRSGKTT 555
                 4433....222222222333..........1333334444449*******99876....5699*******************************99999 PP

                 EEE-SSHHHC CS
                 xxxxxxxxxx RF
       SMC_N 193 ivislreeml 202
                 i+ +++  +l
  CCD24468.1 556 IILTHDLSQL 565
                 9999986665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.76
                  SSSSCEEEEEEEETTSE...EEEEETTEEE-HHHHHHHHHCTT-STT.................................................. CS
                  xxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................. RF
       SMC_N   92 iekeevsisrrvkrkge...seykingkevtkkevsellesagiske.................................................. 135 
                   e++e++i++++k+      s+y+i++ +v +++++++ ++  i                                                     
  CCD24468.1  905 LENHEYEIMTKIKTIRYlqaSKYFIKNYKVLENNLKKIAHKRSIATGfgisitntiavciqsilyyyglrlvfkgeysskkmfetftlllftiisct 1001
                  455566665555543322249***************9999998876655555555555555555555555555555555555555555555555555 PP

                  .......CS-HHH CS
                  .......xxxxxx RF
       SMC_N  136 .......lLSgGe 141 
                          +S+G+
  CCD24468.1 1002 slvsqipDISRGQ 1014
                  5555555555555 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.006
                  EECEEEEEETTSSEEEEEESTTSSHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   13 yagktvilpfsksftaivGpNGSGKsnll 41  
                  y++ t  +  s++   ivG+ GSGKs l+
  CCD24468.1 1073 YKNITLHVTSSQKTIGIVGESGSGKSTLM 1101
                  5555778888899999**********998 PP

  == domain 4  score: 27.1 bits;  conditional E-value: 5.7e-09
                  ETTSEEEEEETTEEE-HHHHHHHHHCTT-STT.....................................................CS-HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................................................xxxxxxxxxxxx RF
       SMC_N  104 krkgeseykingkevtkkevsellesagiske.....................................................lLSgGektLval 147 
                  +++  ++++i+g++v++ +  +l ++  + ++                                                     l SgG+      
  CCD24468.1 1108 YKTPANSIYIDGTDVNEWDTLKLRKQISVVEQnptlfegtvrdnlvygtlndiseieiydvlkylgiyefienlpmgldsridtkLVSGGQA----Q 1200
                  555556666666666666666666666655556666666666666666666666666666666666666677777777777777699***95....5 PP

                  HHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  148 aLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvt 212 
                   L +A    ++  + +lDe  +aLD++  + + +l+k+   ++  ivi+++++m+e +++l  ++
  CCD24468.1 1201 RLCIARALLRKPTILILDECTSALDAASAHLINNLVKNGLPTVLTIVITHSKQMMEACNSLAVIK 1265
                  77777778899999********************************************9987665 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.4e-08     1e-05      14     183 ..     373     648 ..     372     736 .. 0.66
   2 ?   -2.3   0.4       6.5   2.8e+03     114     147 ..     904     937 ..     889     985 .. 0.59
   3 !   14.4   0.1   5.2e-05     0.023      14      78 ..    1073    1135 ..    1055    1152 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 2.4e-08
      AAA_15  14 lkdveidlsee.ltvliGkNnsGKSsilealdlFlnnkekkn...........................................kkvikiekedleif 68 
                 lkdv+i +++   t++iGk +sGKS+++++l +F n   + +                                           ++  k+e++d+ei+
  CCD24468.1 373 LKDVSITFQPGrSTFIIGKSGSGKSTLANLLLKFYNDY-QGSikigntnvkkinknwlfenitvveqrctlfndtlrnnlllgisNSNQKVEQDDIEIS 470
                 799*******99************************44.333667777777777777777777777777776666666555555544555555555555 PP

      AAA_15  69 eniseskdikIdvef..............................................................aek..ekakeyektlkskekkk 103
                   +  +   +I++ +                                                              +++  + + + + t++ ++ ++
  CCD24468.1 471 --QRLKDACRIAMLEelirelpdgldtiigaggvslsggqqqrvaiarayikdssvlildeavsaldiihrelimkaIKNwrSGKTTIILTHDLSQLDY 567
                 ..3344444444444889999999999999999999999999999999999999999999999999988888887762225444455566666677777 PP

      AAA_15 104 adlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkid.kedlkklikkleeslkke 183
                 +d+l+ +++ + k+   ++ l  +++ + ++ ++++++k + + p+e++  ++  +e+  +   ++ ++++++  + ++ke
  CCD24468.1 568 DDFLYVFEDGEVKESGYQQALLQDEKTIFSKLYDIQMRKHMSYSPSESTIVETPGDEKKRFSsTNTSTSTSYEVDTPISKE 648
                 777777777777777777777777777777777777777766666666555554444444443333333333333333333 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 6.5
      AAA_15 114 dlkktikdkklklkknelsdekisvekkkskkel 147
                 +l ++  + ++k+k++++ + +++  k+ +  e 
  CCD24468.1 904 ELENHEYEIMTKIKTIRYLQASKYFIKNYKVLEN 937
                 4444444444455555555555444444332111 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 5.2e-05
      AAA_15   14 lkdveidlsee..ltvliGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdik 78  
                  +k++++++ ++  +  ++G+ +sGKS+++++l ++ ++      + i+i+  d+++++  +  k+i 
  CCD24468.1 1073 YKNITLHVTSSqkTIGIVGESGSGKSTLMYLLTKLYKTP----ANSIYIDGTDVNEWDTLKLRKQIS 1135
                  5666666666565778****************9999988....78999*******999888777765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   3.7e-06    0.0016       6      85 ..     384     485 ..     380     559 .. 0.66
   2 !   15.6   0.1   3.4e-05     0.015       4      58 ..    1083    1131 ..    1080    1251 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.7e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee...............erpevvfvtlpsstsskdllrellralglelka........erlsseell.e 80 
                 ++++++G sG+GK+tl++ ll+ ++ ++   +               e+ +vv+  ++  +  ++l+++ll  + +++ +        +   +++++ +
  CCD24468.1 384 RSTFIIGKSGSGKSTLANLLLKFYNDYQGSIKigntnvkkinknwlfENITVVEQRCTLFN--DTLRNNLLLGISNSNQKveqddieiSQRLKDACRiA 480
                 7899********************9888777799999999999999988888866666666..556666666666666665555666633333333333 PP

      AAA_22  81 aleqa 85 
                 +le+ 
  CCD24468.1 481 MLEEL 485
                 33333 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 3.4e-05
      AAA_22    4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl.lr 58  
                  +++ + ++GesG+GK+tl+  l++ ++        ++  ++++ +  +++++l lr
  CCD24468.1 1083 SQKTIGIVGESGSGKSTLMYLLTKLYKT-------PANSIYIDGTDVNEWDTLkLR 1131
                  5677889******************975.......777778888877777776433 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.5e-05    0.0064      23      63 ..     381     443 ..     369     530 .. 0.64
   2 !   15.3   0.0   4.6e-05      0.02      24     161 ..    1084    1238 ..    1071    1247 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.5e-05
      AAA_16  23 rp.elvllsGesGvGKsslvrellralekd.....................ggiflrgkcdql 63 
                 +p ++++++G sG+GKs+l++ ll+ +++                      ++ +++++c+ +
  CCD24468.1 381 QPgRSTFIIGKSGSGKSTLANLLLKFYNDYqgsikigntnvkkinknwlfeNITVVEQRCTLF 443
                 34699*******************865554666777777777777644443344455555555 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 4.6e-05
      AAA_16   24 pelvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala............. 106 
                     + ++GesG+GKs+l+  l + +++  + i++ g+ +           +++l+   l +q+         e+ ++ +e++++             
  CCD24468.1 1084 QKTIGIVGESGSGKSTLMYLLTKLYKTPaNSIYIDGTDVNE---------WDTLK---LRKQISVV------EQNPTLFEGTVRdnlvygtlndise 1162
                  367889************99998777774366666666666.........55552...33333322......2222222222222223334556666 PP

      AAA_16  107 ...........................avpelagaeasrllellkrllallsrderplvlvlDdlq.wadeaslqllaaLlrl 161 
                                             +++ ++g +a+rl+ + ++ll      ++p++l+lD+    +d+as++l+ +L+++
  CCD24468.1 1163 ieiydvlkylgiyefienlpmgldsriDTKLVSGGQAQRLCIA-RALL------RKPTILILDECTsALDAASAHLINNLVKN 1238
                  6677777788888899888888888877777778888888877.4444......679******99978899999999999876 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00041      0.18       2      61 ..     387     449 ..     386     466 .. 0.82
   2 !   16.2   0.0   2.4e-05     0.011       3      56 ..    1089    1138 ..    1087    1169 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00041
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfw.dgYt..gqevvvidDfgqv 61 
                   ++ G+sg GKStla+ L k   +  +++k +++ +++ +++++ ++ t  +q ++++ D  ++
    CCD24468.1 387 FIIGKSGSGKSTLANLLLKFYNDYQGSIKIGNTNVKKINKNWLfENITvvEQRCTLFNDTLRN 449
                   689*************99988888888888888887777777755666678888888887665 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 2.4e-05
  RNA_helicase    3 lyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYt.gqevvvid 56  
                    ++G+sg GKStl++ L+     kl ++ ++s+y+ +++ + wd  + ++++ v++
    CCD24468.1 1089 IVGESGSGKSTLMYLLT-----KLYKTPANSIYIDGTDVNEWDTLKlRKQISVVE 1138
                    89************933.....3334567**************999777777765 PP

>> ABC_ATPase  Predicted ATPase of the ABC class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.7   7.5e+02     247     264 ..     386     403 ..     379     412 .. 0.83
   2 !   12.2   0.0   0.00013     0.056     304     366 ..     484     547 ..     476     568 .. 0.86
   3 ?   -1.8   0.0       2.3     1e+03     245     262 ..    1085    1102 ..    1048    1107 .. 0.77
   4 !   13.8   0.0   4.2e-05     0.018     300     367 ..    1172    1237 ..    1164    1267 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.7
                 EEEEE-TTSSHHHHHHHH CS
  ABC_ATPase 247 tlIvGggfhGKsTLLeAl 264
                 t I+G    GKsTL + l
  CCD24468.1 386 TFIIGKSGSGKSTLANLL 403
                 89************8755 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00013
                 TTB---CCC--ST.TEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS CS
  ABC_ATPase 304 pFinnLPegkdtt.kfstedASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelv 366
                   i++LP g dt   +     SG   q ++i++a   ++++l++DE  sA  +++r   m+++ 
  CCD24468.1 484 ELIRELPDGLDTIiGAGGVSLSGGQQQRVAIARAYIKDSSVLILDEAVSALDIIHRELIMKAIK 547
                 679999999999977777888************************************9999875 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.3
                  SEEEEEE-TTSSHHHHHH CS
  ABC_ATPase  245 GvtlIvGggfhGKsTLLe 262 
                  + + IvG    GKsTL+ 
  CCD24468.1 1085 KTIGIVGESGSGKSTLMY 1102
                  45669***********85 PP

  == domain 4  score: 13.8 bits;  conditional E-value: 4.2e-05
                  E--TTTB---CCC--STTEEESS--HHHHHHHHHHHHHHTT-SEEEEEGGGS-HHHH---HHHHHHS- CS
  ABC_ATPase  300 vDispFinnLPegkdttkfstedASGStsqAanimealeagakllLiDEDtsAtNlmirDermqelvs 367 
                  + i  Fi+nLP+g d ++  t+  SG   q   i++al ++ ++l++DE tsA       +++++lv+
  CCD24468.1 1172 LGIYEFIENLPMGLD-SRIDTKLVSGGQAQRLCIARALLRKPTILILDECTSALDAAS-AHLINNLVK 1237
                  56889**********.78999********************************76544.555555555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   2.2e-06   0.00098      14      38 ..     375     399 ..     370     403 .. 0.87
   2 !   15.0   0.2   3.5e-05     0.015      17      39 ..    1078    1101 ..    1071    1114 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.2e-06
      AAA_29  14 ghtieidlkgatlltGpsGsGKSTl 38 
                 + +i++++  +t+++G+sGsGKSTl
  CCD24468.1 375 DVSITFQPGRSTFIIGKSGSGKSTL 399
                 4678999888**************9 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.5e-05
      AAA_29   17 ieidlkg.atlltGpsGsGKSTll 39  
                  ++++ ++ ++ ++G+sGsGKSTl+
  CCD24468.1 1078 LHVTSSQkTIGIVGESGSGKSTLM 1101
                  55555555778************8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.2e-05     0.014      90     121 ..     373     405 ..     354     423 .. 0.80
   2 !   12.0   0.0   0.00033      0.15      87     121 ..    1070    1106 ..    1055    1118 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.2e-05
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallp 121
                  l++++  ++  + ++++G+SG GKStL n ll 
   CCD24468.1 373 LKDVSITFQPgRSTFIIGKSGSGKSTLANLLLK 405
                  556666666658999**************9986 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00033
                   HTTHHHHHHHCTT..SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase   87 kegleelkellkd..ktsvlvGqSGvGKStLinallp 121 
                    e +++++ ++++  kt+ +vG+SG GKStL+  l+ 
   CCD24468.1 1070 VEIYKNITLHVTSsqKTIGIVGESGSGKSTLMYLLTK 1106
                   5555555544443349999************988865 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1    0.0011      0.46      25      45 ..     385     405 ..     382     416 .. 0.87
   2 ?    3.0   0.1      0.21        93     113     189 ..     534     617 ..     512     643 .. 0.78
   3 !   12.4   0.0   0.00029      0.13      23      48 ..    1084    1108 ..    1071    1150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0011
       DUF87  25 HlAilgsTGsGKSntvavLle 45 
                 ++ i+g++GsGKS+++ +Ll+
  CCD24468.1 385 STFIIGKSGSGKSTLANLLLK 405
                 5669***************97 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.21
       DUF87 113 aaavqrsvleealdqaka.......keekeklssdepveklleelkkekeelrklknqaiarlldkledllrkggsf.snsstdl 189
                 +  ++r+++ +a++++++       +++  +l++d++++ ++e+ + ++++++++  q ++++ +kl+d++ ++    s s++++
  CCD24468.1 534 LDIIHRELIMKAIKNWRSgkttiilTHDLSQLDYDDFLY-VFEDGEVKESGYQQALLQDEKTIFSKLYDIQMRKHMSySPSESTI 617
                 4446889999999999999999999999999*****999.555555578899****************99776655534444444 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00029
       DUF87   23 trHlAilgsTGsGKSntvavLleell 48  
                  ++ ++i+g++GsGKS+++ +L + l+
  CCD24468.1 1084 QKTIGIVGESGSGKSTLMYLLTK-LY 1108
                  6779*************977654.44 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00078      0.34       3      22 ..     387     411 ..     385     476 .. 0.79
   2 !   11.8   0.0   0.00045       0.2       2      21 ..    1087    1106 ..    1086    1141 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00078
                 EEEESTTSSHHHHHHHHHT.....S CS
    MMR_HSR1   3 aivGrpNvGKStLinaltg.....e 22 
                  i+G++ +GKStL n l++     +
  CCD24468.1 387 FIIGKSGSGKSTLANLLLKfyndyQ 411
                 69***************97443331 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00045
                  EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltg 21  
                  ++ivG + +GKStL+  lt+
  CCD24468.1 1087 IGIVGESGSGKSTLMYLLTK 1106
                  89**************9997 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0041       1.8      17     128 ..     382     565 ..     376     567 .. 0.56
   2 !   11.4   0.0   0.00043      0.19      14      44 ..    1080    1110 ..    1074    1130 .. 0.84
   3 ?   -1.9   0.0       5.5   2.4e+03      81     110 ..    1198    1233 ..    1175    1245 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0041
      AAA_30  17 gdrvavltGpAGtGKttalkalreaweaa.g...................................grviglAptgkaAkvLaeelgieastiakllkr 79 
                 + r +++ G  G+GK+t+ + l + +++  g                                   ++                               
  CCD24468.1 382 PGRSTFIIGKSGSGKSTLANLLLKFYNDYqGsikigntnvkkinknwlfenitvveqrctlfndtlRNN------------------------------ 450
                 5567899******************99995543333333333333333333333333333333333222.............................. PP

      AAA_30  80 lk...............................................................grarlepgtllivDEagmv.dtkqlaallkaaek 114
                                                                                  +ra ++++++li DEa  + d+ + + ++ka+++
  CCD24468.1 451 -LllgisnsnqkveqddieisqrlkdacriamleelirelpdgldtiigaggvslsggqqqrvaiARAYIKDSSVLILDEAVSAlDIIHRELIMKAIKN 548
                 .13333333333333333333333333334444444447778888888888888888888888776677777788888887544366666666666655 PP

      AAA_30 115 .a..gakvilvGDerQl 128
                  +  ++++il  D  Ql
  CCD24468.1 549 wRsgKTTIILTHDLSQL 565
                 31224666666666666 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00043
      AAA_30   14 ltsgdrvavltGpAGtGKttalkalreawea 44  
                  +ts++++  ++G  G+GK+t++  l++++++
  CCD24468.1 1080 VTSSQKTIGIVGESGSGKSTLMYLLTKLYKT 1110
                  45666799*****************999986 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 5.5
      AAA_30   81 k......grarlepgtllivDEagmvdtkqlaallk 110 
                  +      +ra l++ t+li DE   +  +  a+l++
  CCD24468.1 1198 QaqrlciARALLRKPTILILDECTSALDAASAHLIN 1233
                  244555555667778*******87764444444444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0015      0.64       2      24 ..     386     408 ..     385     434 .. 0.86
   2 !    8.5   0.0    0.0044       1.9       4      34 ..    1089    1121 ..    1087    1145 .. 0.79
   3 ?    0.2   0.0       1.6   6.8e+02      53      89 ..    1187    1235 ..    1172    1244 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0015
                 EEEE--SSSSHHHHHHHGGGGBS CS
       AAA_5   2 vlLvGppGtgKselaerlaaaln 24 
                  +++G++G+gKs+la  l++++n
  CCD24468.1 386 TFIIGKSGSGKSTLANLLLKFYN 408
                 589****************9995 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0044
                  EE--SSSSHHHHHHHGGGGB..S--EEEEE--T CS
       AAA_5    4 LvGppGtgKselaerlaaal..nreveyvqltr 34  
                  +vG++G+gKs+l+  l +++   ++  y+ +t+
  CCD24468.1 1089 IVGESGSGKSTLMYLLTKLYktPANSIYIDGTD 1121
                  69******************6666666666665 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.6
                  ....--------............G-SEEEEESGGG--HHHHHHHHHHH CS
       AAA_5   53 slvdsplvraar............egeilvlDEveraesevlnsLlsll 89  
                  s+ d +lv  ++            ++ il+lDE + a +++ + L++ l
  CCD24468.1 1187 SRIDTKLVSGGQaqrlciarallrKPTILILDECTSALDAASAHLINNL 1235
                  5666666666666667777777789**********99988888887655 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0059       2.6       3      19 ..     386     402 ..     384     409 .. 0.86
   2 !    7.9   0.1    0.0062       2.7       2      21 ..    1086    1105 ..    1085    1113 .. 0.81
   3 ?    4.5   0.1     0.067        29      77     131 ..    1207    1254 ..    1187    1272 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0059
                 EEEEC-TTTCHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqk 19 
                  ++ G++GsGK+tL+  
  CCD24468.1 386 TFIIGKSGSGKSTLANL 402
                 689***********975 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0062
                  CEEEEC-TTTCHHHHHHHHH CS
       NACHT    2 lvilqGeaGsGKTtLlqkla 21  
                  ++ + Ge+GsGK+tL+  l 
  CCD24468.1 1086 TIGIVGESGSGKSTLMYLLT 1105
                  67799**********97665 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.067
                  CCSCCCEEEEEE-STT-SS-TCH.........HHHHHCTTTTT--EEEEEEECCC CS
       NACHT   77 lelperlLlilDglDelvtdlgqkekqpvrtlLselirkkllpeasllltvrpra 131 
                  + l++ + lil   De+ + l++    ++ +l+++l++  l++  ++++t + + 
  CCD24468.1 1207 ALLRKPTILIL---DECTSALDA----ASAHLINNLVKNGLPTVLTIVITHSKQM 1254
                  44555555665...688888888....8889*****9996666666666655444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0011      0.48      19      57 ..     386     424 ..     372     432 .. 0.89
   2 !    8.9   0.0    0.0019      0.84      14      54 ..    1082    1122 ..    1070    1125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0011
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrldpDdlRel 57 
                  ++ G +G+GKs+la+ll +  + +++ +++  +++++ 
  CCD24468.1 386 TFIIGKSGSGKSTLANLLLKFYNDYQGSIKIGNTNVKKI 424
                 6888******************9*******999998876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0019
  Zeta_toxin   14 erPklillgGqpGAGKselaellkdelerqgnvvrldpDdl 54  
                  ++ k i ++G +G+GKs+l+ ll++  ++  n + +d++d+
  CCD24468.1 1082 SSQKTIGIVGESGSGKSTLMYLLTKLYKTPANSIYIDGTDV 1122
                  4556677889***************99999******99886 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0     0.001      0.44       2      21 ..     387     406 ..     387     484 .. 0.69
   2 ?    7.5   0.0     0.013       5.8       1      22 [.    1087    1108 ..    1087    1150 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.001
      AAA_18   2 lltGtpGvGKttlakeLskr 21 
                 ++ G++G+GK+tla+ L k 
  CCD24468.1 387 FIIGKSGSGKSTLANLLLKF 406
                 699*************9443 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.013
      AAA_18    1 IlltGtpGvGKttlakeLskrl 22  
                  I++ G +G+GK+tl   L k+ 
  CCD24468.1 1087 IGIVGESGSGKSTLMYLLTKLY 1108
                  89*************9998873 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.014       6.1       4      29 ..     384     409 ..     382     434 .. 0.82
   2 !   12.4   0.0   0.00026      0.11       4      29 ..    1085    1110 ..    1082    1134 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.014
  Ploopntkinase3   4 rliylvGqPGaGkstlmaeltkgfdr 29 
                     r  +++G+ G+Gkstl   l k ++ 
      CCD24468.1 384 RSTFIIGKSGSGKSTLANLLLKFYND 409
                     6679************9988887764 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00026
  Ploopntkinase3    4 rliylvGqPGaGkstlmaeltkgfdr 29  
                      + i +vG+ G+Gkstlm  ltk ++ 
      CCD24468.1 1085 KTIGIVGESGSGKSTLMYLLTKLYKT 1110
                      67889*****************9975 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.6    0.0042       1.8       4      22 ..     385     403 ..     383     555 .. 0.86
   2 !   10.5   0.0   0.00082      0.36       3      30 ..    1085    1118 ..    1083    1238 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0042
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 + +i+G+sg+GK+tla+ l
  CCD24468.1 385 STFIIGKSGSGKSTLANLL 403
                 678*************987 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00082
      AAA_24    3 lkiliyGpsgiGKTtlakel......gpkplfid 30  
                  + i i+G+sg+GK+tl++ l      + + ++id
  CCD24468.1 1085 KTIGIVGESGSGKSTLMYLLtklyktPANSIYID 1118
                  7899*************99977665555555554 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1     0.019       8.5       8      28 ..     387     407 ..     384     465 .. 0.73
   2 !   11.4   0.0   0.00032      0.14       6      76 ..    1086    1158 ..    1082    1172 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.019
                 EEEEBTTSSCCCCCCTTSSSS CS
      Septin   8 mvvGesglGkttlintlfetd 28 
                 +++G+sg Gk+tl n l++  
  CCD24468.1 387 FIIGKSGSGKSTLANLLLKFY 407
                 689************998643 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00032
                  EEEEEEBTTSSCCCCCCTTSSSS-------..-----------S-EEEEEEEEETTCEEEEEEEE---BSSSS CS
      Septin    6 tlmvvGesglGkttlintlfetdlieeekl..eeasekkkktveikkkkvvieedgvklnltviDtpgfGdav 76  
                  t+ +vGesg Gk+tl+  l +   ++++++  + +  ++  t++++k+ +v+e++ + ++ tv D   +G   
  CCD24468.1 1086 TIGIVGESGSGKSTLMYLLTKLYKTPANSIyiDGTDVNEWDTLKLRKQISVVEQNPTLFEGTVRDNLVYGTLN 1158
                  7779************988877777665441144444788999999*******99999999999988888655 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   8.6e-05     0.038      11      38 ..     374     402 ..     366     489 .. 0.87
   2 !   13.3   0.1    0.0002     0.088      17      38 ..    1072    1103 ..    1055    1106 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.6e-05
      AAA_23  11 rdqeidFsk.gltlItGpNGaGKTTildA 38 
                 +d++i F +   t I+G+ G+GK+T+ + 
  CCD24468.1 374 KDVSITFQPgRSTFIIGKSGSGKSTLANL 402
                 8999***88469**************885 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 0.0002
      AAA_23   17 F..........skgltlItGpNGaGKTTildA 38  
                             s++   I+G+ G+GK+T++  
  CCD24468.1 1072 IyknitlhvtsSQKTIGIVGESGSGKSTLMYL 1103
                  3333333557788999*************965 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0018      0.78      10      63 ..     371     426 ..     365     436 .. 0.70
   2 ?    6.7   0.0     0.012       5.4      11      45 ..    1072    1107 ..    1064    1124 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0018
                      HHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS..-EEEEETTTS-T CS
  Sigma54_activat  10 elleqikkvaktdlsvlitGesGtGKellaraiheaskrkek..pfvavncaaipe 63 
                      ++l+ ++ + +   s++i G+sG+GK++la+++ +  +  ++  ++ + n+ +i++
       CCD24468.1 371 TVLKDVSITFQPGRSTFIIGKSGSGKSTLANLLLKFYNDYQGsiKIGNTNVKKINK 426
                      5666677777777899****************988655544411444455555555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.012
                       HHHHHH.HHCTSSS-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat   11 lleqik.kvaktdlsvlitGesGtGKellaraihea 45  
                       ++++i+ +v++++ ++ i+GesG+GK++l  ++ + 
       CCD24468.1 1072 IYKNITlHVTSSQKTIGIVGESGSGKSTLMYLLTKL 1107
                       44444415667779999**********988776654 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.096        42       4      24 ..     388     408 ..     387     442 .. 0.82
   2 !   12.5   0.0    0.0002     0.088       2      37 ..    1087    1121 ..    1086    1140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.096
         PRK   4 vagsSGaGkttvarklekifg 24 
                 + g+SG+Gk+t+a+ l k  +
  CCD24468.1 388 IIGKSGSGKSTLANLLLKFYN 408
                 679**********99988777 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.0002
         PRK    2 IgvagsSGaGkttvarklekifgrekvkaaeiegds 37  
                  Ig+ g+SG+Gk+t++  l+k+ + +  ++ +i+g+ 
  CCD24468.1 1087 IGIVGESGSGKSTLMYLLTKLYK-TPANSIYIDGTD 1121
                  9*******************998.444456665554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0072       3.1     133     159 ..     387     413 ..     357     419 .. 0.85
   2 ?   -3.2   0.0         8   3.5e+03     140     182 ..     551     592 ..     551     605 .. 0.75
   3 !    9.3   0.1    0.0012      0.54     124     162 ..    1079    1116 ..    1041    1152 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0072
       T2SSE 133 lvsGgTgsGKttllyallkeinksder 159
                  + G  gsGK+tl++ llk+ n+++  
  CCD24468.1 387 FIIGKSGSGKSTLANLLLKFYNDYQGS 413
                 45699***************9988655 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8
       T2SSE 140 sGKttll.yallkeinksderivtvEDpvEiqleganqvqlnak 182
                 sGKtt++    l++++ + + + + ED  E++ +g +q  l+++
  CCD24468.1 551 SGKTTIIlTHDLSQLDYD-DFLYVFEDG-EVKESGYQQALLQDE 592
                 89*998636678888877.888888985.888888888777766 PP

  == domain 3  score: 9.3 bits;  conditional E-value: 0.0012
       T2SSE  124 kavrerglilvsGgTgsGKttllyallkeinksderivt 162 
                  +  +++++i + G  gsGK+tl+y l k  ++  + i  
  CCD24468.1 1079 HVTSSQKTIGIVGESGSGKSTLMYLLTKLYKTPANSI-Y 1116
                  3336799999**************9999888884444.3 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0013      0.55      39      66 ..     386     413 ..     370     427 .. 0.87
   2 ?    5.6   0.0     0.015       6.6      41      61 ..    1089    1109 ..    1077    1116 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0013
     DUF3987  39 tlvvapsGerKSpvdklvlrpleeieae 66 
                 t++++ sG++KS++++l+l+  ++++  
  CCD24468.1 386 TFIIGKSGSGKSTLANLLLKFYNDYQGS 413
                 9*******************99999865 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.015
     DUF3987   41 vvapsGerKSpvdklvlrple 61  
                  +v++sG++KS+++ l++++ +
  CCD24468.1 1089 IVGESGSGKSTLMYLLTKLYK 1109
                  9************99999865 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0098       4.3       5      28 ..     386     409 ..     383     472 .. 0.84
   2 !    8.2   0.0    0.0048       2.1       4      41 ..    1086    1122 ..    1083    1136 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0098
                 EEEESSTTSSHHHHHHHHHHHHHH CS
  APS_kinase   5 vwltGlsgsGKstianalekkLve 28 
                  ++ G sgsGKst+an l k  ++
  CCD24468.1 386 TFIIGKSGSGKSTLANLLLKFYND 409
                 5889************99765544 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0048
                  EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH CS
  APS_kinase    4 vvwltGlsgsGKstianalekkLvekgisvylLdGdnv 41  
                  ++ + G sgsGKst+ + l  kL ++  + + +dG  v
  CCD24468.1 1086 TIGIVGESGSGKSTLMYLLT-KLYKTPANSIYIDGTDV 1122
                  77899**********99887.89999999999999877 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.29   1.3e+02       5      27 ..     386     408 ..     383     454 .. 0.69
   2 ?    0.4   0.0       1.5   6.4e+02      12      39 ..     550     576 ..     549     610 .. 0.62
   3 !   11.3   0.0   0.00062      0.27       2      45 ..    1084    1126 ..    1083    1172 .. 0.77
   4 ?    3.0   0.0      0.23     1e+02      61     105 ..    1209    1256 ..    1180    1268 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.29
      AAA_14   5 lvitGaRrvGKTtllkqlikell 27 
                  +i G   +GK+tl++ l+k + 
  CCD24468.1 386 TFIIGKSGSGKSTLANLLLKFYN 408
                 57899999******998876555 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 1.5
      AAA_14  12 rvGKTtllkqlikellvkkesilyinld 39 
                 r+GKTt++ +   ++l + +++ly+  d
  CCD24468.1 550 RSGKTTIILTHDLSQL-DYDDFLYVFED 576
                 79*****966544444.67888887433 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00062
      AAA_14    2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkk 45  
                  +k + i+G   +GK+tl++ l k +  ++ + +yi+  d ++ +
  CCD24468.1 1084 QKTIGIVGESGSGKSTLMYLLTKLYK-TPANSIYIDGTDVNEWD 1126
                  5788999***********99986666.99******999877633 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.23
      AAA_14   61 keekktylflDEiqevpeweka..lkslvdeg..knldvivtGSnskll 105 
                    +k t+l+lDE   + ++ +a  +++lv++g  + l +++t S++++ 
  CCD24468.1 1209 L-RKPTILILDECTSALDAASAhlINNLVKNGlpTVLTIVITHSKQMME 1256
                  3.37899*******99776543339*****9986668999999998875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2    0.0017      0.76       3      21 ..     387     405 ..     386     518 .. 0.92
   2 ?    5.0   0.0     0.058        25       4      19 ..    1089    1104 ..    1087    1162 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0017
      AAA_33   3 llvGlpGsGKstlaerllk 21 
                 +++G +GsGKstla  llk
  CCD24468.1 387 FIIGKSGSGKSTLANLLLK 405
                 789***********98875 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.058
      AAA_33    4 lvGlpGsGKstlaerl 19  
                  +vG +GsGKstl   l
  CCD24468.1 1089 IVGESGSGKSTLMYLL 1104
                  69*********97655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.015       6.5      30      58 ..     380     408 ..     360     425 .. 0.83
   2 ?   -2.7   0.1       7.9   3.5e+03      66     101 ..     650     685 ..     628     688 .. 0.59
   3 !    8.9   0.1    0.0023         1      18      55 ..    1068    1106 ..    1059    1118 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.015
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkld 58 
                 ++ +++++++G++G+GK+++++ llk ++
  CCD24468.1 380 FQPGRSTFIIGKSGSGKSTLANLLLKFYN 408
                 56788999************999888766 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.9
       AAA_7  66 tinfsaqtsanqlqdiiesklekrrkgvygPpggkk 101
                 +++fs   ++ +    + +    +rk++y P ++kk
  CCD24468.1 650 KMSFSTGRDSWSENVKLSDVHRTQRKRIYLPENNKK 685
                 444444444444444455555567888888888876 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0023
       AAA_7   18 dtvry.syllelllknkkpvllvGptGtGKtviikdllk 55  
                  +tv + + ++ ++ +++k + +vG++G+GK++++  l+k
  CCD24468.1 1068 QTVEIyKNITLHVTSSQKTIGIVGESGSGKSTLMYLLTK 1106
                  555540444445667788899***********9976554 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1     0.038        17       4      33 ..     388     417 ..     386     439 .. 0.67
   2 ?   -0.6   0.0       3.4   1.5e+03      64      88 ..     506     530 ..     505     561 .. 0.63
   3 ?    7.3   0.0     0.012       5.4       2      41 ..    1087    1127 ..    1086    1140 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.038
                 EESSTTSSHHHHHHCHCT-CCC-EEETTTT CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsekekstig 33 
                 ++G+sg+GK++l++ +++   + + +  ig
  CCD24468.1 388 IIGKSGSGKSTLANLLLKFYNDYQGSIKIG 417
                 8************99985433333333333 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 3.4
                 -SGGCTTTT-HHHHCTSCEEEEEEE CS
         Roc  64 aGqerfrslhplylreaalailvyd 88 
                 +Gq++  ++++ y+++++++il   
  CCD24468.1 506 GGQQQRVAIARAYIKDSSVLILDEA 530
                 6899999999999999999987533 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.012
                  EEEESSTTSSHHHHHHCHCT-CCC-EEETTT.TEEEEEEEC CS
         Roc    2 vvlvGdsgvGKtsllkrfvedkfsekeksti.gvdfltkev 41  
                  + +vG+sg+GK++l+  +++   ++ ++  i g d+ ++++
  CCD24468.1 1087 IGIVGESGSGKSTLMYLLTKLYKTPANSIYIdGTDVNEWDT 1127
                  569************99887666655544333666666654 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.088        38      23      48 ..     386     411 ..     371     620 .. 0.82
   2 !   10.0   0.0   0.00081      0.35      18      65 ..    1082    1146 ..    1069    1258 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.088
  KAP_NTPase  23 vgLygkWGsGKssllnkledelkefa 48 
                   + gk GsGKs+l n+l + +++ +
  CCD24468.1 386 TFIIGKSGSGKSTLANLLLKFYNDYQ 411
                 5566888***********99999884 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00081
  KAP_NTPase   18 atpivvgLygkWGsGKssllnkledelkefa.................kpvrflfaefnawsfkg 65  
                  + + ++g+ g+ GsGKs+l  +l + +k+ a                   +++ ++e n+ +f+g
  CCD24468.1 1082 SSQKTIGIVGESGSGKSTLMYLLTKLYKTPAnsiyidgtdvnewdtlkLRKQISVVEQNPTLFEG 1146
                  55679************************997888888888888777766677777777777766 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.029        13      24      42 ..     387     405 ..     377     421 .. 0.84
   2 ?    6.9   0.1    0.0069         3      19      38 ..    1084    1102 ..    1068    1111 .. 0.81
   3 ?   -2.0   0.0       3.7   1.6e+03      94     111 ..    1202    1219 ..    1184    1237 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.029
                 EEEESTTSSHHHHHHHHCC CS
      NB-ARC  24 alvGmgGvGKttlakqiln 42 
                 ++ G+ G+GK+tla+  l+
  CCD24468.1 387 FIIGKSGSGKSTLANLLLK 405
                 799**********986655 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0069
                  CSEEEEEEESTTSSHHHHHH CS
      NB-ARC   19 qslvvalvGmgGvGKttlak 38  
                  q   +++vG  G+GK+tl+ 
  CCD24468.1 1084 Q-KTIGIVGESGSGKSTLMY 1102
                  3.589*************85 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.7
                  HHHHHHCCCTTEEEEEEE CS
      NB-ARC   94 rklvrlLltkrfllvlDD 111 
                    + r+Ll+k ++l+lD 
  CCD24468.1 1202 LCIARALLRKPTILILDE 1219
                  45889************7 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       2.2   9.7e+02     135     178 ..     290     329 ..     276     345 .. 0.76
   2 ?    5.6   0.0     0.026        12       1      23 [.     388     410 ..     388     419 .. 0.84
   3 ?    5.6   0.0     0.027        12       1      23 [.    1089    1111 ..    1089    1119 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2.2
  ATP_bind_1 135 ltdptkfisgllsalsamlrlelPhvvvlnkfDllkeklekele 178
                 ++d+++ ++++l+  s +l+  l ++vvl k D++    +k l+
  CCD24468.1 290 IKDVITCFHSCLMLGS-TLNNTLQQIVVLQKGDVAL---KKILD 329
                 5778888888777555.577899**********955...33333 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.026
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelr 23 
                 ++G  GsGK+t+ + l +++++ 
  CCD24468.1 388 IIGKSGSGKSTLANLLLKFYNDY 410
                 79************999998876 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.027
  ATP_bind_1    1 vvGpaGsGKttfvgalseilelr 23  
                  +vG  GsGK+t++  l++++++ 
  CCD24468.1 1089 IVGESGSGKSTLMYLLTKLYKTP 1111
                  79***********9999888765 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.7    0.0021      0.92       2      33 ..     386     415 ..     385     439 .. 0.65
   2 ?   -2.3   0.0         7     3e+03     238     298 ..     505     561 ..     453     565 .. 0.68
   3 ?   -1.6   0.1       4.3   1.9e+03      60     105 ..     641     684 ..     620     687 .. 0.77
   4 ?    9.4   0.1    0.0019      0.82       3      63 ..    1088    1151 ..    1087    1190 .. 0.72
   5 ?    3.3   0.1      0.14        59     237     299 ..    1194    1252 ..    1170    1256 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0021
      AAA_21   2 nvliGpNgsGKSnLLdaldllarldrdveglt 33 
                 +++iG+ gsGKS+L  +l  l+++++++ + +
  CCD24468.1 386 TFIIGKSGSGKSTLANLL--LKFYNDYQGSIK 415
                 89************9999..665533333333 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7
      AAA_21 238 SdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHS 298
                 S G+++  a++ a++ +    s+l++DE  + L+    + +++ +k+ ++ g   i+ TH+
  CCD24468.1 505 SGGQQQRVAIARAYIKDS---SVLILDEAVSALDIIHRELIMKAIKNWRS-GKTTIILTHD 561
                 556555544444444444...99999998888888556666688877766.5555555665 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 4.3
      AAA_21  60 feieeflsqgvryryglrlersqveeklssvetllesgllldkrsl 105
                   ++   ++++ ++ g +   ++v  kls+v+++++++++l++ ++
  CCD24468.1 641 VDTPISKENKMSFSTGRDSWSENV--KLSDVHRTQRKRIYLPENNK 684
                 555556778888999999999999..**************998876 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.0019
      AAA_21    3 vliGpNgsGKSnLLdaldllarl...drdvegltdelsggggirkipslldlydpeipfefeie 63  
                  +++G  gsGKS+L+++l  l  +     +++g+  +++++ ++rk++s    + +  +++ +++
  CCD24468.1 1088 GIVGESGSGKSTLMYLLTKLYKTpanSIYIDGTDVNEWDTLKLRKQISVVEQNPTLFEGTVRDN 1151
                  69***************88877788777777777777777777777777777766666666666 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.14
      AAA_21  237 lSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299 
                  +S G+ + l+++ allr +   ++l++DE  + L+ +  + +  l+k+     +  i+ THS 
  CCD24468.1 1194 VSGGQAQRLCIARALLRKP---TILILDECTSALDAASAHLINNLVKNGLP-TVLTIVITHSK 1252
                  5777777778888888877...**************988888899999988.66669999995 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0018      0.78       6      49 ..     375     441 ..     370     968 .. 0.64
   2 ?    3.3   0.0      0.13        56      15      47 ..    1085    1117 ..    1077    1262 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0018
                  HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEEE.......................E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................x RF
  ATP-synt_ab   6 DalfpivqGqrtlipgafgvGktvisqslskqsnsddaiiyvg.......................i 49 
                  D+ +++  G  t i+g++g Gk+++++ l+k  n+ + +i +g                        
   CCD24468.1 375 DVSITFQPGRSTFIIGKSGSGKSTLANLLLKFYNDYQGSIKIGntnvkkinknwlfenitvveqrcT 441
                  77789999**********************9987766666555444444444444444444444440 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.13
                   -EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   15 qrtlipgafgvGktvisqslskqsnsddaiiyv 47  
                   ++++i+g++g Gk++++  l+k  ++   +iy+
   CCD24468.1 1085 KTIGIVGESGSGKSTLMYLLTKLYKTPANSIYI 1117
                   6899*************8888775544455654 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0022      0.97      52     116 ..     382     447 ..     371     450 .. 0.82
   2 ?    2.9   0.0      0.12        53      39      80 ..    1071    1111 ..    1051    1144 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0022
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeegLrlievekedlkelpk..lvellrerperfilfvDDL 116
                 p +  +++G+ G+GKS+l   ll+ y++ +   i++ ++++k+++k  l+e++  +++r+ lf D L
  CCD24468.1 382 PGRSTFIIGKSGSGKSTLANLLLKFYNDYQ-GSIKIGNTNVKKINKnwLFENITVVEQRCTLFNDTL 447
                 56677899**********999998887766.5577777777777655599*************9976 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.12
      DUF815   39 alventeqfleglpannvLLwGarGtGKSslvkallneyaee 80  
                  ++ +n++ +++    + + ++G+ G+GKS+l+  l++ y++ 
  CCD24468.1 1071 EIYKNITLHVTSS-QKTIGIVGESGSGKSTLMYLLTKLYKTP 1111
                  5666666555543.3567789**********98777766554 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.083        36       4      24 ..     388     408 ..     386     423 .. 0.84
   2 ?    6.8   0.1     0.013       5.8       2      23 ..    1087    1108 ..    1086    1116 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.083
        MobB   4 ivgksgsGKTtLleklipelk 24 
                 i+gksgsGK tL + l++  +
  CCD24468.1 388 IIGKSGSGKSTLANLLLKFYN 408
                 89***********99998765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.013
        MobB    2 lgivgksgsGKTtLleklipel 23  
                  +givg sgsGK tL+  l +  
  CCD24468.1 1087 IGIVGESGSGKSTLMYLLTKLY 1108
                  89************98887665 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.011       4.6      23      46 ..     385     408 ..     375     484 .. 0.84
   2 ?    3.9   0.0     0.046        20      19      59 ..    1081    1121 ..    1072    1141 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
      AAA_10  23 asliiGdlGnGKSvlakllvlyis 46 
                  ++iiG+ G GKS la+ll  +  
  CCD24468.1 385 STFIIGKSGSGKSTLANLLLKFYN 408
                 469***************988765 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.046
      AAA_10   19 tnasas.liiGdlGnGKSvlakllvlyisllggkaliiDpkk 59  
                  t + ++  i+G+ G GKS l+ ll          +++iD + 
  CCD24468.1 1081 TSSQKTiGIVGESGSGKSTLMYLLTKLYK-TPANSIYIDGTD 1121
                  555555479**********9987765443.456677888665 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1     0.034        15      42      59 ..     386     403 ..     366     405 .. 0.77
   2 ?    3.5   0.1     0.089        39      42      56 ..    1087    1101 ..    1062    1115 .. 0.78
   3 ?   -0.5   0.0       1.4   6.3e+02     157     198 ..    1222    1265 ..    1208    1272 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.034
                   EEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  42 llvaGatgsGKStalntL 59 
                   + ++G +gsGKSt  n L
    CCD24468.1 386 TFIIGKSGSGKSTLANLL 403
                   78***********88766 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.089
                    EEEE--TTSSHHHHH CS
  FtsK_SpoIIIE   42 llvaGatgsGKStal 56  
                    + ++G +gsGKSt +
    CCD24468.1 1087 IGIVGESGSGKSTLM 1101
                    569*********964 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.4
                    ....................-----------B--.---EEEEEE CS
  FtsK_SpoIIIE  157 ddlaaene.ritsLsnqgpsygvhvlvtagrele.krpslvviv 198 
                    ++l a  +  i+ L+++g+  +  +++t  ++ +    sl vi 
    CCD24468.1 1222 SALDAASAhLINNLVKNGLPTVLTIVITHSKQMMeACNSLAVIK 1265
                    3444444459*************999998887775666666665 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1      0.04        17      17      37 ..     381     401 ..     376     408 .. 0.88
   2 ?    4.2   0.0     0.055        24      19      54 ..    1084    1117 ..    1079    1135 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.04
      ATPase  17 pegrvvlitGepGtGKtifal 37 
                   gr++ i G++G+GK+++a 
  CCD24468.1 381 QPGRSTFIIGKSGSGKSTLAN 401
                 66899*************985 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.055
      ATPase   19 grvvlitGepGtGKtifalqFlikgaekygepgvfv 54  
                  ++++ i+Ge+G+GK+++   +l++ + k+  + +++
  CCD24468.1 1084 QKTIGIVGESGSGKSTL--MYLLTKLYKTPANSIYI 1117
                  68999**********97..46666666666666666 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.027        12       4      21 ..     388     405 ..     386     414 .. 0.80
   2 ?    2.8   0.0      0.26   1.1e+02       6      38 ..    1091    1123 ..    1089    1267 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.027
                 EESSTTSSHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
        CbiA   4 astkGGvGKTtlaanLar 21 
                 + +k+G+GK+tla  L++
  CCD24468.1 388 IIGKSGSGKSTLANLLLK 405
                 569*********977765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.26
                  SSTTSSHHHHHHHHHHHHHHTT--EEEEE.EEES CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
        CbiA    6 tkGGvGKTtlaanLaralarrglrVllvD.aDpq 38  
                  + +G+GK+tl   L ++ +    + + +D +D+ 
  CCD24468.1 1091 GESGSGKSTLMYLLTKLYKT-PANSIYIDgTDVN 1123
                  689******99888876655.6666666656665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1194  (0.066596); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                       115  (0.00641419); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              41  [number of targets reported over threshold]
# CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.48
# Mc/sec: 8085.37
//
Query:       CCD24469.1  [L=65]
Description: hypothetical protein NDAI_0D01550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-08   34.5   6.7    1.9e-08   34.5   6.7    1.0  1  DPM2      Dolichol phosphate-mannose biosynthesis regulatory 
  ------ inclusion threshold ------
       0.51   10.3   4.0       0.63   10.0   4.0    1.2  1  PIG-P     PIG-P


Domain annotation for each model (and alignments):
>> DPM2  Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   6.7   2.1e-12   1.9e-08      12      70 ..       6      63 ..       1      65 [] 0.89

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 2.1e-12
        DPM2 12 valllfvYYtiwvillPfvdedhvlhkyflpreyairipvillvvlllfvgtFiglvli 70
                + l++ ++Yt+w++ lP++  d  +  +  p +yai +p++ll+++++++gtF+g++li
  CCD24469.1  6 LILVIAAFYTLWLF-LPIFGWDGKIPFFPIPSDYAIYLPIFLLMTGFTLIGTFLGFLLI 63
                5577889*****75.7******99998888**************************998 PP

>> PIG-P  PIG-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.0     7e-05      0.63      11      62 ..       5      56 ..       2      65 .] 0.79

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 7e-05
       PIG-P 11 llstlafllyllwallPeevlhalgityypn.ryWalavpayllmlvlyiyva 62
                 l+ ++ ++y lw +lP    +   i ++p    +a+++p++llm+ ++ + +
  CCD24469.1  5 ALILVIAAFYTLWLFLPIFGWDGK-IPFFPIpSDYAIYLPIFLLMTGFTLIGT 56
                57789999*********8777665.889997578**********987665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      183  (0.0102069); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 501.34
//
Query:       CCD24470.1  [L=391]
Description: hypothetical protein NDAI_0D01560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-35  122.0   7.1    5.8e-35  120.9   7.1    1.7  1  Ribosomal_L1    Ribosomal protein L1p/L10e family
  ------ inclusion threshold ------
      0.014   16.0   1.0       0.21   12.2   0.1    2.6  2  Porphyrn_cat_1  Porphyranase catalytic subdomain 1
      0.086   13.2   1.8       0.21   11.9   1.8    1.6  1  HalX            HalX domain


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   7.1   9.8e-39   5.8e-35      12     204 .]      67     289 ..      21     289 .. 0.83

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 9.8e-39
                   E..........EEEEEEESSS-.TTSGGG-.-EEEEE-STSTSSC...........S-EEEEE-HHHHH.........HHHHTT...-SEEETCHHH CS
  Ribosomal_L1  12 s..........veialnlttkk.pkkadqr.kpgkipLphplgke...........vkiclitkdpqaey......akeakeag.riakviglkklk 78 
                   +          + ++l+  +   +  ++++ k++ ++++++++k+           +k++li+kd++ ++      +++++e g +i++++ +k+lk
    CCD24470.1  67 KsqlleddelsKSVNLIAVNATsFSGSSKNfKSKLLTIKNSFYKPwkassttsikdFKTLLILKDSDMKNvteddvYDKLNEFGiTIDEIVCGKDLK 163
                   04444445666334433333330334444479***********9999999***************9999999889988899999************* PP

                   HHHT-HHHHHHTCCH-SEEEEEGGGHHHHHHHCHHHH.GGGT-S-ECC.....C.T.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETT.SSHH CS
  Ribosomal_L1  79 kkyksfeakrkllkefdlfladdrimpllpklLGkvf.gkrkkmPipv...ltk.gtvkedvkkevekalkstvvvrldkgtclsvkvGkls.ftae 169
                   +kyk+fea+r++++ef l+ladd+i+++lpklLG +   k +++Pip+   ++k  ++k  ++++++k++  +++v+l++gt+++v+ G+l+ f++e
    CCD24470.1 164 TKYKAFEARRAFISEFSLILADDNIVTTLPKLLGGKAyEKIETTPIPIrcyANKeFSLK-ALTNSIKKVYLTQLPVKLPRGTTMNVHLGNLEwFKPE 259
                   *************************************45558******65322223344.6*******************************999** PP

                   HHHHHHHHHHHHHHHTSTTTSGSEEEEEEEETTS- CS
  Ribosomal_L1 170 elaeNieavvkalvekvpkkwkniksiylkttmsp 204
                   ela Nie++ ++lv++      +i++i++k+++sp
    CCD24470.1 260 ELATNIENITESLVKN-----YKIRAIFIKSNKSP 289
                   ****************.....9***********98 PP

>> Porphyrn_cat_1  Porphyranase catalytic subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.5e-05      0.21      10      75 ..     243     309 ..     240     311 .. 0.92
   2 ?    1.4   0.1     0.083   4.9e+02      36      63 ..     350     377 ..     318     386 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.5e-05
  Porphyrn_cat_1  10 gnkayvilnNLe.deaetvtLnllglsgnsvqsvtikrlkitkngapvlseetlksapksltLaaee 75 
                     g +++v l NLe +++e+++ n+ + +++ v++ +i+ + i++n++pvl    ++++++++t+ a e
      CCD24470.1 243 GTTMNVHLGNLEwFKPEELATNIENITESLVKNYKIRAIFIKSNKSPVLPLYYNQDVIDEITVSATE 309
                     678899999**95689**********************************************99877 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.083
  Porphyrn_cat_1  36 gnsvqsvtikrlkitkngapvlseetlk 63 
                     +++++sv+ kr +++++++ + +e++ +
      CCD24470.1 350 EKQIESVKRKRATLEDSKTKEEEEKNEE 377
                     5679999999999555554444444433 PP

>> HalX  HalX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.8   3.5e-05      0.21      12      37 ..     353     378 ..     344     380 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.5e-05
        HalX  12 lfaLasKravLeaekseaeLadseeY 37 
                  +++++Kra+Le +k+ +e + +ee+
  CCD24470.1 353 IESVKRKRATLEDSKTKEEEEKNEEK 378
                 6899********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1970  (0.109878); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2797.05
//
Query:       CCD24471.1  [L=377]
Description: hypothetical protein NDAI_0D01570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-28   98.1   0.0    5.5e-28   97.5   0.0    1.3  1  ApbA           Ketopantoate reductase PanE/ApbA
    9.4e-27   93.7   0.0    1.5e-26   93.0   0.0    1.4  1  ApbA_C         Ketopantoate reductase PanE/ApbA C terminal
  ------ inclusion threshold ------
       0.16   12.6   0.0       0.35   11.5   0.0    1.5  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
       0.41    9.4   3.1       0.26   10.0   1.3    1.5  2  BBS2_C         Ciliary BBSome complex subunit 2, C-terminal


Domain annotation for each model (and alignments):
>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   1.2e-31   5.5e-28       1     151 [.       9     172 ..       9     173 .. 0.91

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 1.2e-31
                 EEEES-SHHHHHHHHHHHH.HTHCEEEE-SCH.HHHH.HHHHCEEEEETTCEEEEEECEEECCH.......SCCCCS-ESEEEE-SSGGGHHHHHHHHG CS
        ApbA   1 iailGaGaiGsllaakLak.agadvtlilrsr.rlea.lkknGlrltseggeeilrppealsae.......ekselepidlvivtvKayqteealeeik 89 
                 ++ +G+G++G ++aa L + ++a ++ i+rs+ +l++  ++++++l +++  ++l+ +  l  +       e+  +ep+ +++v++K++qt++al ++ 
  CCD24471.1   9 VHLIGLGSMGAIFAADLLNyTNASIIPIFRSKeKLAKfQNEANSELMIHR--NYLPSRPILKYKfakaycpESTINEPFKNLVVSTKTFQTKSALTPYL 105
                 689**************999************999998889999999999..4444444444445588999999************************* PP

                 GGECTCEEEEEESSSSCHHHHHTTTS.....TTSEEEEEEEE-EEEEEETTEEEECS--EEEEEESS CS
        ApbA  90 plldpntvvlllqNGlgheeelreal.....pkprvlggvtthgatregpgevhhagkgeikigela 151
                 +++d+nt+ ll+qNGlg+++ l+  +     ++p++++gv+thg  + ++++++  ++g++ki+ l+
  CCD24471.1 106 KYIDSNTNLLLIQNGLGVLDDLKNDVfidetRRPQLFQGVITHGGSQISDFTINNSSQGDLKISRLP 172
                 ******************************9999*****************************9876 PP

>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   3.4e-30   1.5e-26       6     123 ..     221     361 ..     216     363 .. 0.85

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 3.4e-30
      ApbA_C   6 rweKllinaainpltalldckngellespelralvrallkEalavaeaeg......................velseerleeaveavlektaanrsSMl 82 
                 ++ K+++n++inp+ta+ldc++ge+   p    l+++++ E l v++++                        +ls++ +  ++ ++lek ++ +sSM+
  CCD24471.1 221 QLYKFVFNCCINPVTAILDCSIGEMK--PNSTPLLTSIVVETLFVLRKAFsplfqyesmyngqedypaidvnGKLSTDYMVGELLKYLEKHKNSSSSMR 317
                 889**********************9..999***************999955555555555555555544322355555999999999999999***** PP

      ApbA_C  83 qDveagrktEidyinGavvklAeklgve...tPvnellyellka 123
                 +D  + r+tEidyinG+vv+lA++lg++   t+vn++++ell++
  CCD24471.1 318 EDAVHLRNTEIDYINGYVVRLANALGLStesTKVNKTICELLNL 361
                 ***************************98889*********986 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   7.8e-05      0.35       3      51 ..      10      55 ..       8      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7.8e-05
                   EEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEE CS
  F420_oxidored  3 giiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvt 51
                    +iG G+mg+ +a  ll+    + +i+ +  r++ek++++++e++ +++
     CCD24471.1 10 HLIGLGSMGAIFAADLLNYT--NASIIPI-FRSKEKLAKFQNEANSELM 55
                   589***************97..6777755.8**********99986655 PP

>> BBS2_C  Ciliary BBSome complex subunit 2, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.49   2.2e+03     102     135 ..     178     211 ..     158     258 .. 0.65
   2 ?   10.0   1.3   5.8e-05      0.26     355     413 ..     314     372 ..     308     375 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.49
      BBS2_C 102 klqvslsvnkeekhvelvvsttndtiiraviifa 135
                  +q s+  +++ ++ el+  +t++t+++   i++
  CCD24471.1 178 MIQKSCVLKEDRNENELMHLLTSETMVKGFNITH 211
                 4566666677777777777777788887766654 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 5.8e-05
      BBS2_C 355 ksmrksyselkdlnkeLikeykkRsnNheellaaLKevnqiIqkasrLRvGkaktqvva 413
                 +smr+   +l +++ + i+ y +R  N   l +   +vn++I +  +LR+G +k + ++
  CCD24471.1 314 SSMREDAVHLRNTEIDYINGYVVRLANALGLSTESTKVNKTICELLNLRLGLNKVRSLN 372
                 689************************************************99998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2834.43
//
Query:       CCD24472.1  [L=299]
Description: hypothetical protein NDAI_0D01580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-10   40.2   1.5    3.1e-10   40.2   1.5    2.2  2  GCR1_C       Transcriptional activator of glycolytic enzymes
  ------ inclusion threshold ------
      0.035   14.2   0.5      0.083   13.0   0.5    1.6  1  MerR_1       MerR HTH family regulatory protein
          7    7.2   9.1        1.3    9.5   3.2    2.6  3  Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) pr


Domain annotation for each model (and alignments):
>> GCR1_C  Transcriptional activator of glycolytic enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.29   1.7e+03       8      28 ..      36      56 ..      31      72 .. 0.55
   2 !   40.2   1.5   5.2e-14   3.1e-10       3      80 .]     198     273 ..     196     273 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.29
      GCR1_C  8 ktVedlwnEykeglngkpsik 28
                ++ +++w++++     + +++
  CCD24472.1 36 NKMSEIWEDFTRKSLDEEKVH 56
                555666666665444444444 PP

  == domain 2  score: 40.2 bits;  conditional E-value: 5.2e-14
      GCR1_C   3 lsreiktVedlwnEykeglngkpsikslekky.gkrWrkdskesklfsrRkkiidfierlieeegitreeavkileelR 80 
                 +  +++++++l  Ey++ l   p++k ++kky +k++++ ++  ++ +rRk+++++i++ +++++++ +e +++ e +R
  CCD24472.1 198 MAVKPNSITELFYEYENVLT--PKVKDIQKKYgKKCLKQITN-IRTLQRRKALVSEIKKFAKQNRKSIKETLEVAEYIR 273
                 77899************999..**********8889998888.99*****************************99988 PP

>> MerR_1  MerR HTH family regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.5   1.4e-05     0.083      19      67 ..     209     256 ..     207     258 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
                 HHHHHTT-S-EE-TTS-EEEEHHHHHHHHHHHHHHHTT--GGG---XXX CS
      MerR_1  19 ywekegllkpkrteggrryYtdedierLklikyLlkrGltlkgikklln 67 
                 ++e e +l pk  +  +  Y+++ ++++ +i++L+ r   +++ikk  +
  CCD24472.1 209 FYEYENVLTPKV-KDIQKKYGKKCLKQITNIRTLQRRKALVSEIKKFAK 256
                 89**********.6666****************************9876 PP

>> Fungal_TACC  Fungal Transforming acidic coiled-coil (TACC) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.33     2e+03      24      59 ..      34      69 ..      33      84 .. 0.72
   2 ?   -0.9   0.2      0.38   2.3e+03      38      68 ..      69      99 ..      48     107 .. 0.61
   3 ?    9.5   3.2   0.00022       1.3      12      68 ..     207     265 ..     191     273 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.33
  Fungal_TACC 24 KVkllkkgyeakyqkkldklelenkslkqeieqLkk 59
                 K++ + + +e   +k+ld+ +++n ++++ +++L++
   CCD24472.1 34 KINKMSEIWEDFTRKSLDEEKVHNFTFQEKLKTLEE 69
                 566666667777777888888888888887777766 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.38
  Fungal_TACC 38 kkldklelenkslkqeieqLkkqleaerkEK 68
                 + +d ++ +n s   +++ L+++l     E 
   CCD24472.1 69 EIFDLIQGQNASILIDVDLLSRNLLKSDIES 99
                 3345566677777777777777766655555 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00022
  Fungal_TACC  12 dLYvqYSsKHEqKVkllkkgyeakyqkkldklel..enkslkqeieqLkkqleaerkEK 68 
                  +L+ +Y +    KVk ++k+y +k  k++ ++++   +k+l +ei+++ kq     kE 
   CCD24472.1 207 ELFYEYENVLTPKVKDIQKKYGKKCLKQITNIRTlqRRKALVSEIKKFAKQNRKSIKET 265
                  588888888899*****************998752267899********9987777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1189  (0.0663171); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2348.82
//
Query:       CCD24473.1  [L=622]
Description: hypothetical protein NDAI_0D01590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.2e-69  231.3  28.4    3.8e-41  140.4   9.6    2.3  2  MatE             MatE
    0.00023   21.2   4.2    0.00023   21.2   4.2    3.6  4  Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domai


Domain annotation for each model (and alignments):
>> MatE  MatE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.4   9.6   4.3e-45   3.8e-41       1     161 []     179     340 ..     179     340 .. 1.00
   2 !   96.8  10.8   1.1e-31   9.7e-28       2     161 .]     409     569 ..     408     569 .. 0.98

  Alignments for each domain:
  == domain 1  score: 140.4 bits;  conditional E-value: 4.3e-45
        MatE   1 PialenllesllslidtllvgrlgskalAavsialsilsllfv.fllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqil 98 
                 P++++++l+++lsl++++ v++lg+k+l++v++++++++++++  + gl+t+l+tl++qa+Ga+n++ +++ ++++ ++++l  l+i+ +++ +se+il
  CCD24473.1 179 PLIFTFILQNSLSLASIFSVSHLGTKELGGVTLGSMTANITGLaAIQGLCTCLDTLCSQAYGANNYHLVGVLVQRCAVITILAFLPIMYIWFSWSEIIL 277
                 9******************************************9******************************************************* PP

        MatE  99 slftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislislllniplnyl 161
                 s +  + e+++la++yl+++++g+p+++l+++ +++l+++g+++++++i++++++ln+++ny+
  CCD24473.1 278 SWMIPERELCKLAANYLKVTAFGVPGFILFECGKRFLQCQGIFHASTIILFVCAPLNALMNYI 340
                 **************************************************************7 PP

  == domain 2  score: 96.8 bits;  conditional E-value: 1.1e-31
        MatE   2 ialenllesllslidtllvgrlgskalAavsialsilsllfvfllglstalttlvgqalGaknfkrakealrqglilllllsliiallvllfseqilsl 100
                  ++++ +e+l + i+t++ ++lg+  lAa si+++++sl + +++++s++++t+v++++Ga  +k   +++ ++l+l++++s   +++++ f ++i++l
  CCD24473.1 409 GIIMVEAEFLGFEILTIFSSHLGTAPLAAQSIVSTVASLAYQVPFSISVSTSTRVANFIGASLYKSCITTCKMALLLSFVCSSMNMFIIFEFKDKIAKL 507
                 5777888999***************************************************************************************** PP

        MatE 101 ftqdeevlelakrylrililgipalalqlvlsgilrgagktkvplyislisl.llniplnyl 161
                 f+++ +v+ l+   l+il+  ++++a++  ++g lrg+g++k++ yi+l+++  ++ip++yl
  CCD24473.1 508 FSNESDVVILVVSTLPILACMQVFDAFNASTAGCLRGQGRQKIGGYINLFAFyCVGIPMAYL 569
                 ************************************************************97 PP

>> Polysacc_synt_C  Polysaccharide biosynthesis C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.5      0.69   6.2e+03      91      91 ..     254     254 ..     178     281 .. 0.55
   2 !   21.2   4.2   2.6e-08   0.00023       1      82 [.     293     378 ..     293     391 .. 0.90
   3 ?   -0.7   0.9      0.15   1.4e+03      59     109 ..     436     489 ..     418     504 .. 0.53
   4 !   14.3   4.6   3.5e-06     0.032       2      77 ..     522     600 ..     521     602 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.69
  Polysacc_synt_C  91 l 91 
                      +
       CCD24473.1 254 C 254
                      1 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 2.6e-08
  Polysacc_synt_C   1 vLailalsiiflslstvlssiLqglgrqkialkalvigalvklilnllli....plfgivGaaiatvlallvvavlnlyalrrllg 82 
                      +L + a++++ + l+  +   Lq  g  ++ +++l+++a ++ ++n++l+      +g++Ga ++ ++ + ++++ ++++   +++
       CCD24473.1 293 YLKVTAFGVPGFILFECGKRFLQCQGIFHASTIILFVCAPLNALMNYILVwdkrIGIGYLGAPLSVAINYWLMTLGLIIYTTTTTN 378
                      58899*********************************************884445567******************999877665 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.15
  Polysacc_synt_C  59 aiatvlallvvavln.lyalrrllgikl..ellrrllkpllaalvmgivvylll 109
                      a+ ++++ +++++++  + ++  +  ++   +  +l+k ++ +  m++++ +++
       CCD24473.1 436 AAQSIVSTVASLAYQvPFSISVSTSTRVanFIGASLYKSCITTCKMALLLSFVC 489
                      444444444444444334444444444443344455566666666666655444 PP

  == domain 4  score: 14.3 bits;  conditional E-value: 3.5e-06
  Polysacc_synt_C   2 LailalsiiflslstvlssiLqglgrqkialkalvigal.vklilnllliplf..givGaaiatvlallvvavlnlyal 77 
                      L ila + +f +++  +++ L g grqki  +++++++  v + + +ll  +f  gi G  +++++al+++++++ ya+
       CCD24473.1 522 LPILACMQVFDAFNASTAGCLRGQGRQKIGGYINLFAFYcVGIPMAYLLAFKFnmGISGLWYGITCALIMMSICQGYAV 600
                      88***************************999888887559*********7665599*****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 3986.45
//
Query:       CCD24474.1  [L=327]
Description: hypothetical protein NDAI_0D01600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-41  142.2   0.0    2.8e-41  141.7   0.0    1.2  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
       0.15   12.2   0.0        0.3   11.2   0.0    1.5  1  TT1725        Hypothetical protein TT1725


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   0.0   3.1e-45   2.8e-41       5     293 ..      19     307 ..      14     308 .. 0.91

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 3.1e-45
                   E-SSS-ST.TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH....-TTTGGG-EEEEEE--SSSTTSSSS-HHHHHHHHHHHHHHH CS
  Aldo_ket_red   5 GtwqlgskeeiskeealellrraleaGinffDtAevYgkgqseellGealkk....srkkreeviiatKvdlrdaeiksglskeniresleeslkrL 97 
                   G w      +i+ ++ ++ +  a++ G+++fD A  Y    +e+++G+ +k+      +kre+++i++K+      ++  ++++++  +l++ lk L
    CCD24474.1  19 GCW------KIPTSTCAQQIYDAIKVGYRLFDGATDY---GNEKEVGQGIKRaideGLVKREDLFIVSKL------WNNFHHPDHVKLNLQRNLKDL 100
                   444......5566778888889***************...899999998888888899************......99******************* PP

                   T-S-EEEEEE-S--TTS-.............................HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHHTTT--EEEEE-B-BT CS
  Aldo_ket_red  98 gtdyvDllllHrpdpslp............................sieevldaleelvkeGkiraiGvSnfsveqlekakkkkkvkivavqveynl 166
                   g+dyvDl+++H p                                  + ++++a+e+lv+eG+i++iG+Sn++ + +   ++   +k+va+q+e+++
    CCD24474.1 101 GLDYVDLYYIHFPIAFKFvspderyppgmytgkedeakgilteenvPLIDTYRAMEKLVDEGLIKSIGISNYNGGLVADTLRGCRIKPVALQIEHHP 197
                   ***********9975555577******************************************************999999**************** PP

                   T-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT-.-HHHHHHHHHTTSTT-SEEEE CS
  Aldo_ket_red 167 lreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrdertsknldaaeelselakehgv.slaqlalryalsqpavgivip 262
                   +  l +e+lle+ck ++v+++ays +g  ++    q+ ++  +    +               ++++++a ++   + +q+ lr+a+  ++++ +ip
    CCD24474.1 198 Y--LTQEKLLEYCKIHDVQVVAYSSFGPQSFVDCGQEMAKNTP----PL-----------FDHPTIKKIADKYEAvTTSQVLLRWAT--QRGVAIIP 275
                   *..*****************************88888777653....33...........4679********6655***********..9******* PP

                   --SSHHHHHHHHGGG.G----HHHHHHHHHHH CS
  Aldo_ket_red 263 gasnieqlednldal.elklseeevaeldell 293
                   ++s+ e+l +nl    +++l ee+++e+ +l+
    CCD24474.1 276 KSSKKERLLENLTIDqKVTLAEEDLREISALN 307
                   *************98566*********98875 PP

>> TT1725  Hypothetical protein TT1725
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.3e-05       0.3      17      57 ..     246     286 ..     241     313 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.3e-05
                 HHHHHHHHHHHHTTTEEEEEEEETTEEEES--S------SE CS
      TT1725  17 peelaekleklaeeelkLkmitnrGvkvyPegleetfctdh 57 
                  +++a+k e+++++++ L+  t+rGv + P++ +++ + ++
  CCD24474.1 246 IKKIADKYEAVTTSQVLLRWATQRGVAIIPKSSKKERLLEN 286
                 6899***************************9998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2540.49
//
Query:       CCD24475.1  [L=759]
Description: hypothetical protein NDAI_0D01610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-51  175.0   3.7    1.1e-48  166.2   3.7    2.3  1  PIF1             PIF1-like helicase
    1.5e-20   73.8   0.0    1.9e-19   70.2   0.0    2.2  2  AAA_30           AAA domain
      2e-10   41.2   0.1    3.8e-10   40.3   0.1    1.5  1  AAA_19           AAA domain
    9.2e-07   27.2   0.7    0.00061   17.9   0.0    2.3  2  Herpes_Helicase  Helicase
    6.8e-05   22.1   2.0    0.00014   21.0   2.0    1.4  1  T2SSE            Type II/IV secretion system protein
    0.00013   22.2   0.0    0.00044   20.5   0.0    1.9  1  AAA_22           AAA domain
    0.00046   19.7   2.0    0.00055   19.5   0.1    2.1  2  AAA_7            P-loop containing dynein motor region
     0.0031   17.3   0.0     0.0097   15.7   0.0    1.8  1  SH3_13           ATP-dependent RecD-like DNA helicase SH3 dom
     0.0052   17.2   0.1      0.019   15.4   0.1    2.0  1  AAA              ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.057   13.5   0.0    2.3  1  AAA_14           AAA domain
      0.018   14.3   0.3      0.048   12.9   0.1    1.8  2  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.026   14.0   0.0      0.066   12.7   0.0    1.7  1  PhoH             PhoH-like protein
      0.039   13.3   0.1      0.082   12.3   0.1    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.053   13.4   0.5       0.23   11.3   0.5    2.1  1  Helicase_RecD    Helicase
      0.095   12.6   0.3       0.49   10.3   0.3    2.1  1  UvrD_C_2         UvrD-like helicase C-terminal domain
       0.26   11.7   1.4        1.7    9.1   0.3    2.9  2  RNA_helicase     RNA helicase


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.2   3.7     1e-51   1.1e-48       1     361 [.     266     569 ..     266     572 .. 0.90

  Alignments for each domain:
  == domain 1  score: 166.2 bits;  conditional E-value: 1e-51
                 ---HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHC..TCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHH..HHHTSCC CS
        PIF1   1 qLneeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrs..egkivlavAssGvAalllegGrtahsrfkiplekdeestc..kikrgsk 95 
                 +L++eQ+ v+d ii     +k  ++F+tGs+GtgK+ ++k++++kl s   ++ ++ +As+G+Aa  + gG+t+h  ++++l+  +++++  +i+r+++
  CCD24475.1 266 KLTKEQELVIDLII-----RKRLNVFYTGSAGTGKSVILKTIISKLGSihGKEAIAITASTGLAATTI-GGTTLHKWAGVGLGDRSADQLanSIQRRKD 358
                 599**********4.....45667999*******************99867789999***********.*******************99999****** PP

                 CHHHHHC-SEEEEECGGGSBHHHHHHHHHHHHHHCT-...-SCCCC-EEEEE--TTS-----SSSSS.---BGC...CSCHHHH--..EEEE-S-STTT CS
        PIF1  96 laellkktsliiwDEapmverecfealdrtlrdilkekeidkpFGGktvvlgGDfrQilPviekgsr.aeivaasikeSklWkevk..vlkLtknmRll 191
                 + + +k+t+++i+DE++m++   + +l++++r ++++   ++pFGG+++vl GDf+Q++P+ ++ s   +++++   eSk+W+++   ++ Ltk++R++
  CCD24475.1 359 VLNSWKNTRVLIIDEISMIDGLFLTKLETVARTVRRS---NRPFGGIQLVLTGDFFQLPPIQKRDSPvLSQFCF---ESKMWSQCIqrTILLTKVFRQQ 451
                 ************************************8...89*******************9766541466666...9******6558*********** PP

                 T...........HHHHHHHHHHHCT---CCCCHH.................HHCHCCS---SS--...........EEEESSCCHHHHHHHHHHCCSSS CS
        PIF1 192 sesldetekkelkeFskwllkigdGkineedeeealieiPedlllkksedkieeivsevygdllqeltdkeyleerailcptnedvdeiNnyvlsklpg 290
                 ++           e  ++l++i+ G+i+++   +                +++   +  y+d ++           ++l++t+++v+  N + l++lpg
  CCD24475.1 452 DN-----------ELVDILNSIRFGEIDQTMAAQ--------------VYNLK--RKVNYDDGIA----------PTELYATRREVEISNSRQLKELPG 513
                 95...........899************999876..............12333..3456999777..........479********************* PP

                 --EEEE-EEE...........ESBSSCHHCHHHCCTTSS-SCEEE-TT-EEEE-S--CTT-SC-TCEEEEE CS
        PIF1 291 eekeylssDsisksseeieeldalypteflnslkanglpnhvLkLkvGvpvmllrNldqsaGLcNGtrliv 361
                  e++y+s D                ++e+ + l+ + ++++++ Lk  ++vm+l+N  +++ L+NG+ ++v
  CCD24475.1 514 IERRYESDDA--------------GTPELIKLLDSSLMVEKIITLKEDAQVMMLKN-KPEVNLVNGSLGKV 569
                 *******999..............4799****************************.67789*****9988 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.31   3.4e+02     144     174 ..      60      90 ..      52      99 .. 0.73
   2 !   70.2   0.0   1.7e-22   1.9e-19       2     184 ..     267     479 ..     266     486 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.31
      AAA_30 144 agigtaeLtevvRqke.seeraaalalregda 174
                 ++ +t++Lte+vR +e ++  ++++  +egd+
  CCD24475.1  60 KASHTHSLTEIVRSSEiESSSQVSH-EKEGDV 90 
                 56789*********99555555544.455665 PP

  == domain 2  score: 70.2 bits;  conditional E-value: 1.7e-22
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.g.grviglAptgkaAkvLa.......eelgi...eastiakllkrlk.grarle 87 
                 l++eQ+ +++ ++ ++ + ++ tG AGtGK+ +lk++   + +  g + +++ A+tg aA +++       +++g+    a+ +a+ ++r k   ++++
  CCD24475.1 267 LTKEQELVIDLIIRKR-LNVFYTGSAGTGKSVILKTIISKLGSIhGkEAIAITASTGLAATTIGgttlhkwAGVGLgdrSADQLANSIQRRKdVLNSWK 364
                 7889999998777766.7999****************655555545478899************65555443555466688888888888886445667 PP

      AAA_30  88 pgtllivDEagmvd...tkqlaallkaaeka.....gakvilvGDerQlasVea..Ggvlrdlveaagi......gtaeLtevvRqkeseeraaalalr 170
                 + ++li+DE++m+d    ++l+++++ ++++     g++++l GD  Ql+++++    vl++ + ++++      +t+ Lt+v+Rq+++e  ++ + +r
  CCD24475.1 365 NTRVLIIDEISMIDglfLTKLETVARTVRRSnrpfgGIQLVLTGDFFQLPPIQKrdSPVLSQFCFESKMwsqciqRTILLTKVFRQQDNELVDILNSIR 463
                 77***********733345666666666665788988***************9976778888876643334444599********************** PP

      AAA_30 171 egdae..ealealadr 184
                  g+++   a + ++ +
  CCD24475.1 464 FGEIDqtMAAQVYNLK 479
                 **99955555555555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   3.4e-13   3.8e-10      11     143 ..     283     415 ..     271     418 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 3.4e-13
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelle....eaeeekklqeeel 105
                  +++ t+ +GtGK+ +lk+i++ l +++g   e i++ a tg Aa  +           tT+H+ a +++ d+  ++l+  +    +++  +  +++ +
  CCD24475.1 283 LNVFYTGSAGTGKSVILKTIISKLGSIHGK--EAIAITASTGLAATTIGG---------TTLHKWAGVGLGDRSADQLA--NsiqrRKDVLNSWKNTRV 368
                 467789**********************88..89***********99884.........579**999999888744433..22334444455565666* PP

      AAA_19 106 livDEfqdvdelqyrLlkallgekkk.........lllvGDpdQliy 143
                 li+DE++++d l  + l++++ +  +         l+l GD  Ql++
  CCD24475.1 369 LIIDEISMIDGLFLTKLETVARTVRRsnrpfggiqLVLTGDFFQLPP 415
                 **********8888888888844444677999999999999999987 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1   0.00082      0.92       9      95 ..     235     325 ..     228     335 .. 0.78
   2 !   17.9   0.0   5.4e-07   0.00061     733     788 ..     691     745 ..     686     752 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00082
  Herpes_Helicase   9 LnltsaakvrrivekikeLsrertaeepelewfrseldleeeeeselslPFsaylitGtAGaGkstsiqalaenldCl.......itgatvvAa 95 
                      L l++ +++++iv++ ++Ls+  ta  +  + f+ + + e   +  ++   +++  tG+AG+Gks  ++++  +l  +       it++t +Aa
       CCD24475.1 235 LKLSAPKRIKPIVRQKSSLSS--TAYGRLTQEFKLTKEQELVIDLIIRKRLNVF-YTGSAGTGKSVILKTIISKLGSIhgkeaiaITASTGLAA 325
                      77899999************7..7778888899988888888888665555555.6*************9999997654444444677776666 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 5.4e-07
  Herpes_Helicase 733 amtiaksqGlslekvAicFgnhknlklssvYvalsRatdsefl.vmdvnPLrereek 788
                      a+ i ksqG  +++  ++  n     + +vYvalsRa++ e+l v++  P + r ++
       CCD24475.1 691 ALSIHKSQGQTIQRLKVDLKNI--FEAGQVYVALSRAVSKEQLqVLNFSPSKIRSND 745
                      899***************9987..99**************99946799998877664 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   2.0   1.2e-07   0.00014      37     156 ..     180     309 ..     162     320 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.2e-07
       T2SSE  37 reveelekaalerlisriaalakldiseerplqdarlp.........ekgvrlrvvllPvvagealviR.kksakeltlddlgaeealkekiaevlrka 125
                 r++++ + + ++   ++ +   +++++++ + q+ +++         ++  +++++ l + +  +  +R k+s ++  +  l +e +l+++++ v+   
  CCD24475.1 180 RQLSFTSTQSATLASENTQLNFSQSTQTSILSQSTQVQrsskrsispTRTSSFQGLKLSAPKRIKPIVRqKSSLSSTAYGRLTQEFKLTKEQELVIDLI 278
                 5566666666666677777777777777777777777777777777888999999999999999999997888899999******************** PP

       T2SSE 126 vrerglilvsGgTgsGKttllyallkeinks 156
                 +r+r ++  +G  g+GK+++l ++++++ + 
  CCD24475.1 279 IRKRLNVFYTGSAGTGKSVILKTIISKLGSI 309
                 ************************9998765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.9e-07   0.00044       8     129 ..     285     408 ..     279     413 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 3.9e-07
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsst.....sskdllrellralglelkaerlsseellealeqalraravielliiDEa 100
                 ++ tG +GtGK++ l+++ ++l         +++e + +t++ +      + ++l ++    lg++  +   ++   +++  + l++ + +++liiDE+
  CCD24475.1 285 VFYTGSAGTGKSVILKTIISKLG------SiHGKEAIAITASTGLaattiGGTTLHKWAGVGLGDRSAD---QLANSIQRRKDVLNSWKNTRVLIIDEI 374
                 5669*****************94......1356666655555544222377777777777777765555...666666666666666666899****** PP

      AAA_22 101 qhlr..seealeeL...rsllnlsrkgvqliLvG 129
                   ++    + le++   ++++n    g+ql+L G
  CCD24475.1 375 SMIDglFLTKLETVartVRRSNRPFGGIQLVLTG 408
                 **96541444444422255666588888888887 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2       8.1   9.1e+03      40      63 ..       5      29 ..       4      36 .. 0.73
   2 !   19.5   0.1   4.9e-07   0.00055      21      60 ..     270     308 ..     264     328 .. 0.82

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 8.1
       AAA_7 40 GptGtGKtviikd.llkkldkekyl 63
                G+t  GK+++ ++  +++ +++++ 
  CCD24475.1  5 GNTSNGKSLTGRRtATSSKPNQSFA 29
                899999*999998666666666555 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 4.9e-07
       AAA_7  21 rysyllelllknkkpvllvGptGtGKtviikdllkkldke 60 
                  ++ +++l+++++ +v+++G++GtGK+vi+k++++kl  +
  CCD24475.1 270 EQELVIDLIIRKRLNVFYTGSAGTGKSVILKTIISKLG-S 308
                 577899**************************999997.4 PP

>> SH3_13  ATP-dependent RecD-like DNA helicase SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   8.6e-06    0.0097      25      55 ..     543     573 ..     533     582 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.6e-06
      SH3_13  25 vfrvgDkVmqlkNnydkgvfNGDiGiikeid 55 
                 ++++  +Vm+lkN+++ ++ NG +G++  + 
  CCD24475.1 543 TLKEDAQVMMLKNKPEVNLVNGSLGKVLFFT 573
                 4788899*******************97665 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.7e-05     0.019       4      69 ..     288     376 ..     285     393 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-05
                 ESSTTSSHHHHHHHHHHHHT....HEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGG CS
         AAA   4 yGppGtGKTllakavakelg....vefleisgsellsk............yvgesekkirelfkeakeka.......kpsilfiDEida 69 
                 +G  GtGK+ + k ++++lg     e + i +s+ l               vg + ++  +l +++++ +       ++ +l+iDEi  
  CCD24475.1 288 TGSAGTGKSVILKTIISKLGsihgKEAIAITASTGLAAttiggttlhkwaGVGLGDRSADQLANSIQRRKdvlnswkNTRVLIIDEISM 376
                 799***************9543335555555555553346666666667755555555555555555555556899656*******965 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     5e-05     0.057       6      81 ..     286     382 ..     281     408 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5e-05
      AAA_14   6 vitGaRrvGKTtllkqlikell.vkkesilyinldderd..................kkladpekllelilek..lke..ekktylflDEiqevpewek 81 
                 + tG   +GK+++lk++i++l  ++ ++ + i+  +                     +  +  ++l + i+++  + +  +++++l++DEi+++++++ 
  CCD24475.1 286 FYTGSAGTGKSVILKTIISKLGsIHGKEAIAITASTGLAattiggttlhkwagvglgD--RSADQLANSIQRRkdVLNswKNTRVLIIDEISMIDGLFL 382
                 56888899**********9999*88888888888876666778888888777777432..3334577777775343337889999*********77654 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.3e-05     0.048       4      43 ..     285     323 ..     282     373 .. 0.65
   2 ?   -3.5   0.0         4   4.5e+03      31      52 ..     546     567 ..     535     580 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.3e-05
     DUF2075   4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvNhpl 43 
                 v+ tG aGtGK+v+l +++ +l  + ++++a+ ++ +  l
  CCD24475.1 285 VFYTGSAGTGKSVILKTIISKL-GSIHGKEAIAITASTGL 323
                 7889*****************9.77777777666655544 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4
     DUF2075  31 ertavylsvNhplvlvlreala 52 
                 e  +v++++N+p+v+ +   l 
  CCD24475.1 546 EDAQVMMLKNKPEVNLVNGSLG 567
                 4556677777777777665554 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.9e-05     0.066       5      35 ..     267     298 ..     265     309 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.9e-05
                 -SHHHHHHHHHHHH-S.EEEEE--TTSSTTHH CS
        PhoH   5 ktkeQkeylealkknd.ivfaiGpaGtGKtyl 35 
                  tkeQ+ +++ + ++   vf +G+aGtGK+ +
  CCD24475.1 267 LTKEQELVIDLIIRKRlNVFYTGSAGTGKSVI 298
                 589********996662699*********986 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   7.3e-05     0.082      23      66 ..     283     326 ..     265     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.3e-05
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagk 66 
                    n++ +G++G+GK+++ k + s l +++ +ea+ +++ + +a +
    CCD24475.1 283 LNVFYTGSAGTGKSVILKTIISKLGSIHGKEAIAITASTGLAAT 326
                   58999******************************999888764 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   0.00021      0.23       3     111 ..     288     386 ..     286     395 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00021
  Helicase_RecD   3 tAdRGRGKSaalGlalaalia.egksnilvtapskenvktlfeflakglealglkeeekkkkaekaelrvrkqrieyiapdellklkeqadllvvD 97 
                    t++ G+GKS +l  ++++l + +gk  i +ta +  +++t+     ++   +gl +++  +++         ++i+  + +++l++ +++ +l++D
     CCD24475.1 288 TGSAGTGKSVILKTIISKLGSiHGKEAIAITASTGLAATTIGGTTLHKWAGVGLGDRS--ADQL-------ANSIQ--RRKDVLNSWKNTRVLIID 372
                    6788*************9987355699**************99998888888776433..3333.......23444..5566677777889***** PP

  Helicase_RecD  98 EAAaiplpllkkll 111
                    E ++i+  +l kl 
     CCD24475.1 373 EISMIDGLFLTKLE 386
                    *****999988874 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.3   0.00043      0.49       2      45 ..     689     725 ..     688     728 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00043
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRA 45 
                 ++al+ihk+QG+  +   v+  +  +a         +Y+a++RA
  CCD24475.1 689 CWALSIHKSQGQTIQRLKVDLKNIFEA-------GQVYVALSRA 725
                 89*********9877666633333332.......2466666666 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.3    0.0015       1.7       2      59 ..     286     375 ..     285     388 .. 0.70
   2 ?   -1.5   0.0       2.9   3.3e+03      40      64 ..     430     454 ..     417     479 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0015
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl...............................klkkkdsvys.rnpeddfwdgYtgqevvvidDfg 59 
                   + +G++g+GKS++ k+++++l +                                 ++ ++d++    + ++d+++++++  v++id+++
    CCD24475.1 286 FYTGSAGTGKSVILKTIISKLGSIHgkeaiaitastglaattiggttlhkwagvglGDRSADQLANsIQRRKDVLNSWKNTRVLIIDEIS 375
                   66899***************9943355566777777777777777777777777773333344333366777777777777777777665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.9
  RNA_helicase  40 eddfwdgYtgqevvvidDfgqvkde 64 
                   e+++w+++ + ++++   f q+ +e
    CCD24475.1 430 ESKMWSQCIQRTILLTKVFRQQDNE 454
                   7899**9999999988888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 5389.56
//
Query:       CCD24476.1  [L=492]
Description: hypothetical protein NDAI_0D01620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-64  216.1   0.3    1.1e-63  215.1   0.0    1.6  2  Pkinase         Protein kinase domain
    3.8e-31  108.3   0.4    6.7e-31  107.5   0.0    1.6  2  Pkinase_Tyr     Protein tyrosine kinase
     0.0049   15.9   0.8      0.016   14.2   0.1    2.1  2  Haspin_kinase   Haspin like kinase domain
      0.007   16.0  17.8      0.011   15.4  17.8    1.2  1  Spt20           Spt20 family
     0.0072   16.6   5.1       0.02   15.2   5.1    1.7  1  DUF4230         Protein of unknown function (DUF4230)
     0.0079   16.1   3.3       0.17   11.8   0.1    2.4  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.044   14.7   0.0       0.16   12.9   0.0    2.0  1  WD40            WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.1   0.0   4.1e-67   1.1e-63       1     264 []      23     318 ..      23     318 .. 0.90
   2 ?   -2.7   0.7       1.1   2.9e+03     209     236 ..     378     398 ..     360     424 .. 0.45

  Alignments for each domain:
  == domain 1  score: 215.1 bits;  conditional E-value: 4.1e-67
                 EEEEEEEEEESSEEEEEEE..ETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE......SSEEEEEEE--TTEBHHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykav..eketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee......kdelylvleyveggeladlle 90 
                 ++ ++++G+G++G+V +a+  e+ ++ +vA+Kk+ +   k    k+ lrE+k+l++++ h+ni  ly++          + lyl  e++e++ ++++++
  CCD24476.1  23 FQLIKEIGHGAYGVVCSARfaEAVEETTVAIKKVTNVFSKTLLCKRSLRELKLLRHFRgHKNITCLYDMDIVfypdgsFNGLYLYEELMECD-MHQIIK 120
                 57789**********9987225557889***************************************975445557888999********99.99**** PP

                 HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHH CS
     Pkinase  91 rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvl.keneyskkvDvWsl 183
                  ++ l++++ +++++qil gl+y+Hs+ ++HrDlKp N+L++ + +lKi+DFGla+ ++++       lt++v+t++Y+APE++ ++++y+k++D+Ws 
  CCD24476.1 121 SSQPLTDAHYQSFIYQILCGLKYIHSADVLHRDLKPGNLLVNADCQLKICDFGLARGFSENPVennqfLTEYVATRWYRAPEIMlSYQGYTKAIDIWST 219
                 999******************************************************99987789999***************99************** PP

                 HHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT...SHH...HHHTTS...........................-HHHHHHHHHHT-SSGCCS CS
     Pkinase 184 Gvilyelltgkppfsgekgkekvekeldqlekilkilg...etkeklpeasei...........................seeakdllkkllkkdpkkR 252
                 G+il+e+l gkp+f+   gk+     +dql +il++lg   +  e+l++   i                           + +a+dll+k+l+ dp++R
  CCD24476.1 220 GCILAEFLGGKPIFK---GKD----YVDQLNRILEVLGtppD--ETLRR---IgsknvqdyihnlgyipkvpfvnlypnaNLQALDLLEKMLAFDPQRR 306
                 ***************...666....8999999*****96432..22222...233456888999***************999***************** PP

                 TTHHHHHTSGGG CS
     Pkinase 253 ltaeellqhpyl 264
                 +t++e+l+hpyl
  CCD24476.1 307 ITVDEALEHPYL 318
                 **********97 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.1
                 HHHTHHHHHHHCTSHH...HHHTTS-HH CS
     Pkinase 209 eldqlekilkilgetkeklpeaseisee 236
                 +l+  ++ +++      +++++++ +++
  CCD24476.1 378 QLQA-QQQAQV------QMQQQQQAEQQ 398
                 2222.112222......12222222222 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.0   2.6e-34   6.7e-31       2     207 ..      24     234 ..      23     255 .. 0.85
   2 ?   -4.3   1.0       3.4   8.8e+03      28      42 ..     382     396 ..     369     407 .. 0.41

  Alignments for each domain:
  == domain 1  score: 107.5 bits;  conditional E-value: 2.6e-34
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS.-BTTB--EEEEEE...SSSS...EEEEEE--TTEBHHHH CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkkl.khpnivkllgvct...keep...llivteyvkgGdLlkf 91 
                  +l k++G+Ga+G V++++    +  +e++Va+K++++  +++   ++ l+e+k+++++  h+ni  l+ + +    +++   l++  e+++  d+++ 
   CCD24476.1  24 QLIKEIGHGAYGVVCSARFA--EAVEETTVAIKKVTNVFSKTLlCKRSLRELKLLRHFrGHKNITCLYDMDIvfyPDGSfngLYLYEELMEC-DMHQI 118
                  6899***************9..89999********9888877657899**********99*******9986655633335558888888875.9**** PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE.EETTSSTSGGGGS.-HHHHHHSE.EEHHH CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey.vkkeeaklpvkWm.apEslkekk.ftsks 186
                  ++++  ++lt  +  sf++q+ +G++y++s +++Hrdl   N L++ + + ki+DfGLar  +++    ++  ++ +  +W+ apE++ + + +t++ 
   CCD24476.1 119 IKSS--QPLTDAHYQSFIYQILCGLKYIHSADVLHRDLKPGNLLVNADCQLKICDFGLARGFSENPVEnNQFLTEYVATRWYrAPEIMLSYQgYTKAI 214
                  *997..9*******************************************************76666625556777999**98***9766655***** PP

                  HHHHHHHHHHHHHTTSSGTTT CS
  Pkinase_Tyr 187 DvWsfGvllwEiftlgespyp 207
                  D+Ws G +l E +  g+  ++
   CCD24476.1 215 DIWSTGCILAEFLG-GKPIFK 234
                  ***********875.554444 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 3.4
                  EEEEEEEEESTTSSH CS
  Pkinase_Tyr  28 evkVavKtlkeeate 42 
                  +++  v + ++++ e
   CCD24476.1 382 QQQAQVQMQQQQQAE 396
                  222222222222222 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   6.2e-06     0.016     211     256 ..     133     177 ..      24     189 .. 0.66
   2 ?   -0.7   0.1      0.21   5.5e+02     133     159 ..     338     364 ..     292     413 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.2e-06
  Haspin_kinase 211 ifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRl 256
                      +qi+  L+   ++ +  HRdL+ +n Lv++  +  ++d+ l+R 
     CCD24476.1 133 FIYQILCGLKYIHSA-DVLHRDLKPGNLLVNADCQLKICDFGLARG 177
                    555555555544433.556*************************96 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.21
  Haspin_kinase 133 levledvtiskelslkelkslklvkgt 159
                    +ev++d++  k + + e + ++ +  +
     CCD24476.1 338 FEVVNDMEELKQMVIDEVHDFRKFVRK 364
                    466666666666666555555544333 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4  17.8   4.3e-06     0.011      85     155 ..     349     423 ..     335     436 .. 0.56

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.3e-06
       Spt20  85 GclIvqvrDhrnsvaqsqktqdqkqsqqnqqqqqqqqqqqqqqqq....qqeqqqqqnekdsttteekekksksk 155
                   +I +v+D+r+ v +   +++++++ q q q+qqq q q qqqq    q++qq q + + s+ +++   +s+ +
  CCD24476.1 349 QMVIDEVHDFRKFVRKPLLEEEEQAKHQAQLQAQQQAQVQMQQQQqaeqQAQQQIQGSINGSNYSQQMGFQSPIQ 423
                 56899***********99888666555444444444444444444021133333333334443333333333333 PP

>> DUF4230  Protein of unknown function (DUF4230)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   5.1   7.6e-06      0.02      87     141 ..     353     413 ..     335     421 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.6e-06
     DUF4230  87 k.....rgllnritdedeeellkeaeakikeeae.englleqAeenakklleqllkslgye 141
                 +     r + ++   e+ee++  +a+ +++++a+ +++  +qAe++a++++++ ++  +y+
  CCD24476.1 353 DevhdfRKFVRKPLLEEEEQAKHQAQLQAQQQAQvQMQQQQQAEQQAQQQIQGSINGSNYS 413
                 23334455556667789*****************9999***************99655554 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   6.6e-05      0.17     168     196 ..     149     175 ..     144     176 .. 0.84
   2 ?    4.5   0.5     0.011        28     104     155 ..     354     402 ..     220     416 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.6e-05
                 EE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfeda 196
                 +lH+Dl+pgNllv+ +d ++  + Df++a
  CCD24476.1 149 VLHRDLKPGNLLVN-ADCQL-KICDFGLA 175
                 69************.66777.68888887 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.011
                 CHHCH.-STTTB-SHHCHTCCHHHHHHCHHHCCCGCCTCCHHHHHHHHHHHH CS
         APH 104 alhqvdpaalpladflaqdlellrqlesatarllaselldlleeleeqvlaa 155
                 ++h++++  +++  +++ ++++++ql ++  ++ + + ++ ++++e+q+ ++
  CCD24476.1 354 EVHDFRKFVRKPLLEEEEQAKHQAQLQAQ--QQAQVQMQQ-QQQAEQQAQQQ 402
                 66777755566666666679999999999..666666666.66888887665 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.2e-05      0.16       2      24 ..      74     101 ..      73     110 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.2e-05
                 EEEEEEESSSSEEEEE.....EETTSSE CS
        WD40   2 qclrtltGHssvtsla.....fspdgaw 24 
                 ++lr+++GH+++t+l      f pdg++
  CCD24476.1  74 KLLRHFRGHKNITCLYdmdivFYPDGSF 101
                 689******99****8888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3022  (0.168554); expected 358.6 (0.02)
Passed bias filter:                     1276  (0.0711696); expected 358.6 (0.02)
Passed Vit filter:                       180  (0.0100396); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.40
# Mc/sec: 3658.09
//
Query:       CCD24477.1  [L=299]
Description: hypothetical protein NDAI_0D01630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-68  230.2   0.0    3.8e-68  230.0   0.0    1.0  1  PhzC-PhzF  Phenazine biosynthesis-like protein


Domain annotation for each model (and alignments):
>> PhzC-PhzF  Phenazine biosynthesis-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.0   0.0   2.1e-72   3.8e-68       1     283 []      10     295 ..      10     295 .. 0.92

  Alignments for each domain:
  == domain 1  score: 230.0 bits;  conditional E-value: 2.1e-72
                 EEET-SSTTSSEEEEEEESTT....CS-HHHHHHHHHHHTSSEEEEEE--SSTTSSEEEEEE-SSSEES--HHHHHHHHHHHHHHCT-..S-SCEEEEE CS
   PhzC-PhzF   1 vdaFtespfkGNpaaVvldad....elddeelqsiAaelnlseTaFllkpsdekarfrlRyFTPvaEvdlcGHatlasahalaekglv..asaetvele 93 
                 +d+Ft+ pfkGNp+aVv++ +    e++ ++lqsiA+++nlseT+Fl+ ps+++++++lR+FTP aE++++GH+t++s++a +e++       +t+ +e
  CCD24477.1  10 IDVFTAVPFKGNPVAVVNFLEtpeaEVTTQQLQSIAKWTNLSETTFLFAPSNKEYNYKLRIFTPAAELPFAGHPTIGSCRAYLEFTNQlnSGPQTILQE 108
                 79*****************999********************************************************999877665544899****** PP

                 ETTEEEEE.EEEEETCEECCEEEEE-SEEEEEE-HHHHHHHHHHCCTSGG-TTS-BEEEESSSEEEEEEBSTCCHHHH----H...HHHHHHCT-EEEE CS
   PhzC-PhzF  94 tkaGilpvkslkekddgeellielkfPvikteevssedlallakllklaaqkalpiavkstglekvivplsseeavaelspdl...aeeikkcpkkgvi 189
                 + +Gi+p+k       +ee  i++++  ++ ee+s+e ++++ak+l+ +     p+++ + g+ +v+  +s++eav +l+pd+   ++ + k  + gvi
  CCD24477.1 109 CGVGIVPLK------FDEEGKISFQAKKTEVEEISRETASDYAKALGIH--AIEPPKLLQVGPAWVVYLVSNAEAVIDLNPDFnflKQVSDKAGHTGVI 199
                 ********8......677888999999*******************999..789*****************************8887888888777777 PP

                 EEEET.TTSSCCEEEEEEEE.GGGTEEEESS-HHHHHHHHHHHHHCC-SSSEEEEEEEE-GGGT--EEEEEEEE.E-TTCEEEEEEEE-EEEEEEE CS
   PhzC-PhzF 190 vtaaa.eagskkdfhsRmFa.PklGivEDpvtGsAsgaLaaylseklnleesakikieqgqalgrsgtlevevevkvdkekervkvtGkAvtvmeg 283
                    ++   +s +++++R+F  P + + EDpv+Gs+ +aL +yl+e  n ++++ ++++qg +l r+g+l+ ++e+ ++  + +++v G Avtv++g
  CCD24477.1 200 LAGSKnDGNSGEQYEMRAFYcPTISVLEDPVCGSGCVALLRYLQEIKNYQKTTLVNVTQGIRLCRDGHLRGRIEIDEKTSQISYHVGGDAVTVING 295
                 6655505567799*****966****************************************************998889999***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2166.84
//
Query:       CCD24478.1  [L=145]
Description: hypothetical protein NDAI_0D01640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-29  102.4   1.1    1.3e-29  102.0   1.1    1.1  1  Elf1             Transcription elongation factor Elf1 like
     0.0049   16.9   1.3     0.0082   16.2   1.3    1.3  1  Ribosomal_L37ae  Ribosomal L37ae protein family
  ------ inclusion threshold ------
       0.02   14.3   2.2      0.033   13.6   2.2    1.4  1  Vps36-NZF-N      Vacuolar protein sorting 36 NZF-N zinc-finge
       0.14   12.3   6.4       0.91    9.6   2.0    2.2  2  zf-Sec23_Sec24   Sec23/Sec24 zinc finger
        0.5   10.7   3.6        2.4    8.5   0.5    2.1  2  zf-C2H2_2        C2H2 type zinc-finger (2 copies)


Domain annotation for each model (and alignments):
>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   1.1   3.7e-33   1.3e-29       1      78 []       2      79 ..       2      79 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 3.7e-33
        Elf1  1 gkRkkkakkrkkkkkkklptkFdCpfCnheksvevkldkkekiaevsCkvCgesfetkvnalsepvDvYskwiDacee 78
                gkRkk++  + kk ++kl+tkF+C+fCnh++sv+++ldk+++i++++Ck+Cg+sf+t++n ls+pvDvYs+w+Da+ee
  CCD24478.1  2 GKRKKSSRGPVKKIVQKLNTKFNCLFCNHDNSVSCTLDKRNSIGSLQCKICGQSFQTRINGLSQPVDVYSDWFDAVEE 79
                89***888999****************************************************************986 PP

>> Ribosomal_L37ae  Ribosomal L37ae protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.3   2.3e-06    0.0082      18      61 ..       7      56 ..       4      59 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.3e-06
                     HHHHHHHHHHHHHHS-BEESSSSSS.EE.....EEEETTEEEETTTTEEE CS
  Ribosomal_L37ae 18 slrkrvkkieisqhakytCpfcgkt.kv.....kRkavgiwkCkkcgktv 61
                     s r  vkki ++ ++k++C fc+++ +v     kR+++g  +Ck cg+ +
       CCD24478.1  7 SSRGPVKKIVQKLNTKFNCLFCNHDnSVsctldKRNSIGSLQCKICGQSF 56
                     67888******************99666667778************9987 PP

>> Vps36-NZF-N  Vacuolar protein sorting 36 NZF-N zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.2   9.2e-06     0.033       4      40 ..      17      53 ..      14      60 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.2e-06
  Vps36-NZF-N  4 eavtatWvCpICsfsNevpsnfdpnastplPpClaCG 40
                 ++ +++  C  C  +N+v+ ++d ++s     C  CG
   CCD24478.1 17 QKLNTKFNCLFCNHDNSVSCTLDKRNSIGSLQCKICG 53
                 6789999*****************************9 PP

>> zf-Sec23_Sec24  Sec23/Sec24 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   2.0   0.00026      0.91      21      35 ..      20      34 ..      11      37 .. 0.83
   2 ?    5.2   0.2    0.0063        22      15      34 ..      36      57 ..      34      60 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00026
  zf-Sec23_Sec24 21 gkrwiCnfCnhknev 35
                    + ++ C fCnh n v
      CCD24478.1 20 NTKFNCLFCNHDNSV 34
                    6789*********98 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0063
  zf-Sec23_Sec24 15 ckidfggkr..wiCnfCnhkne 34
                    c+ d +++    +C +C+++ +
      CCD24478.1 36 CTLDKRNSIgsLQCKICGQSFQ 57
                    5566665444489*****9876 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.5   0.00068       2.4      40      61 ..      12      33 ..       5      41 .. 0.81
   2 ?    3.1   0.1     0.034   1.2e+02      46      62 ..      43      58 ..      37      65 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00068
   zf-C2H2_2 40 leylrekieekleClyCekefk 61
                ++++ +k++ k++Cl+C+++++
  CCD24478.1 12 VKKIVQKLNTKFNCLFCNHDNS 33
                7889999**********98864 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.034
   zf-C2H2_2 46 kieekleClyCekefks 62
                 i + l+C +C+++f++
  CCD24478.1 43 SIGS-LQCKICGQSFQT 58
                5555.99****999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1076.44
//
Query:       CCD24479.1  [L=158]
Description: hypothetical protein NDAI_0D01650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-39  134.7   1.7    1.3e-39  134.4   1.7    1.1  1  COX5A      Cytochrome c oxidase subunit Va
  ------ inclusion threshold ------
      0.081   13.1   0.0       0.15   12.3   0.0    1.4  1  Nterm_IS4  Insertion element 4 transposase N-terminal


Domain annotation for each model (and alignments):
>> COX5A  Cytochrome c oxidase subunit Va
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   1.7   1.4e-43   1.3e-39       2     102 ..      52     150 ..      51     151 .. 0.98

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 1.4e-43
       COX5A   2 eetdeefdaryekfferediDlfelrrglnnlfayDlvPepkvieaalracrrvndfalavRilEavkekvenkkqiYeyllqelkpvleeLgistkee 100
                 eet+eef+aryek f+++  Dlfe++r lnn+f+yDlvP+p+v+e+alra+rrvnd+++a+R++Ea+k kven++q Y+++l+elk+v+eeLg+++kee
  CCD24479.1  52 EETFEEFTARYEKEFDEAY-DLFEVQRVLNNCFSYDLVPAPAVVEKALRAARRVNDLPTAMRVFEALKFKVENEDQ-YKAYLDELKDVREELGVPLKEE 148
                 79****************9.********************************************************.********************** PP

       COX5A 101 lg 102
                 l+
  CCD24479.1 149 LF 150
                 96 PP

>> Nterm_IS4  Insertion element 4 transposase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.6e-05      0.15       6      67 ..      78     141 ..      75     157 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.6e-05
   Nterm_IS4   6 vLtrvlppelvd..evlaetgtaevRkrkLPaevvvylvlalaLfrdesyeevvrrLtagleee 67 
                 vL + ++ +lv   +v++++ +a++R  +LP+ + v+  l     ++++y+  +++L+++ ee 
  CCD24479.1  78 VLNNCFSYDLVPapAVVEKALRAARRVNDLPTAMRVFEALKFKVENEDQYKAYLDELKDVREEL 141
                 6788888888863369*****************************************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       895  (0.0499191); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1265.31
//
Query:       CCD24480.1  [L=553]
Description: hypothetical protein NDAI_0D01660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-93  311.9  11.8    8.3e-93  311.2  11.8    1.3  1  Nramp     Natural resistance-associated macrophage protein


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.2  11.8   4.6e-97   8.3e-93       3     353 ..      80     461 ..      78     466 .. 0.93

  Alignments for each domain:
  == domain 1  score: 311.2 bits;  conditional E-value: 4.6e-97
       Nramp   3 tdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerlpkkvsillwilaelaiiatdlaeviGaAialnllfgipllvgvlitavl 101
                 t+++aG++  ykLl  +l+s+++a++ q l+a+LG vTg +la++++++lp  ++i l+ilae+aiiatdlaev+G+Ai+ln+lfg+pl +gv++t+v+
  CCD24480.1  80 TAVAAGSAHRYKLLFSILVSNFMAAFWQCLCAKLGAVTGLDLAQNCKKHLPHGLNITLYILAEVAIIATDLAEVVGTAISLNILFGVPLALGVVLTVVD 178
                 899************************************************************************************************ PP

       Nramp 102 vllllfle..kgg...yrklEaliialvlvialsFiaelflvkp.dwgevlkglvvPslpg..keslllavgilGatvmphnlflhsslvqerkitidr 192
                 vl++l+    +g+   +r +Ea++ +lv++ + +F++elf +++ ++gev++g++ Ps      + l+l ++ilGatvmph l+l s +vq r ++ d 
  CCD24480.1 179 VLIVLMAYkpNGDmklIRLFEAFVSLLVVLTVGCFTIELFYSDIgSVGEVFSGFL-PSRAVfdGDGLYLSLAILGATVMPHSLYLGSGVVQPRLRDYDI 276
                 *****98643333455899************************9668******99.99888889***************************99977755 PP

       Nramp 193 ...................seke......ealkyeriDtiial.ivaflinlailivaAavly..sggkdvesledaaeaLepllGskaasvlFaigLl 263
                                    +         e l+y+  + +i+l +va+++n+ailiv+ a+ly  ++ +  ++l++++++L   l+ k a ++F ++Ll
  CCD24480.1 277 kngnylpdetdvennhdnyK--PsfdainETLHYTIAELLISLfTVALFVNCAILIVSGATLYgtTQDTGEADLFSIYNLLCSTLS-KGAGTIFVLALL 372
                 889****9999987766551..155667799************99******************855555789**************.7*********** PP

       Nramp 264 aaGlsStitgtlagqyvmegflglrislwlrrlitralafvpalivilligaelelvkllvlsqvllslllPfaliplllltsskklMGe 353
                  +G+s+ i++tl+gq+v egfl++ +++  rr itra+a++p li++l++g ++    +l +sqv+lslllPf+ +pll++t +k++M  
  CCD24480.1 373 FSGQSAGIVCTLSGQMVSEGFLNWTVPPAIRRSITRAVAITPCLILVLVAGRSGL-SGALNASQVVLSLLLPFVSAPLLYFTCNKSIMRV 461
                 *****************************************************99.********************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 4270.60
//
Query:       CCD24481.1  [L=245]
Description: hypothetical protein NDAI_0D01670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.2e-63  212.8   0.0    4.8e-63  212.7   0.0    1.0  1  FSH1           Serine hydrolase (FSH1)
      0.004   16.8   0.0       0.23   11.1   0.0    2.8  3  Abhydrolase_1  alpha/beta hydrolase fold
  ------ inclusion threshold ------
      0.022   14.6   0.8        1.2    8.9   0.6    2.7  2  Abhydrolase_2  Phospholipase/Carboxylesterase
       0.13   11.8   0.0       0.32   10.5   0.0    1.7  1  DLH            Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.7   0.0   1.1e-66   4.8e-63       3     211 ..       5     233 ..       1     234 [. 0.95

  Alignments for each domain:
  == domain 1  score: 212.7 bits;  conditional E-value: 1.1e-66
        FSH1   3 kkkkiLcLhGytqsgeiFraktsalrkllkklnvelvyldaplelaekadlpkseseeee.kseeeeesraWfrkkdekneyegleesldavkdyiken 100
                 + +k+L+LhG++q+g++F++k+s++rkllkk n++++y+d+p++l ek+dlp++++ee++ ++ +++ +++Wf++++  ++  +l +++++v+ yiken
  CCD24481.1   5 TIPKLLFLHGFLQNGKVFSEKSSGIRKLLKKANIQCDYIDGPVSL-EKKDLPFETDEERWkATVDAQMNKSWFYHSE-ISKELDLTDAINTVTSYIKEN 101
                 5689*****************************************.********99999988999999********9.99******************* PP

        FSH1 101 gpfdGiiGFSqGaalaallaslleellkeashpslkfailvsGfkleepk............yeeyy.eedkiqtptLhvlGelDtvvdeerseaLaea 186
                 gp+dGi+GFSqGaal++++++++ el +  shp++k+++++sG++++e +            y++ +  +++ +t++++++G++D+ v+ +r+++L + 
  CCD24481.1 102 GPYDGIVGFSQGAALSTIITNKITELVP--SHPEFKVSVIISGYSFTEADpehegqlriterYRDSFtPKKDSKTKIIFIYGTSDQAVPAKRTQYLCNL 198
                 ***************************9..9***************99999999****999999999888888************************** PP

        FSH1 187 fkns..........skvlkHpggHfvPnkkeyvda 211
                 fk+s           kv++HpggH+vPnkk+++++
  CCD24481.1 199 FKESegtvgadserIKVFEHPGGHMVPNKKDIIRP 233
                 ***9999999999889**************99875 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.083   3.7e+02       3      18 ..       9      24 ..       7      43 .. 0.80
   2 ?    1.3   0.0     0.048   2.2e+02      77      93 ..     107     123 ..      77     130 .. 0.81
   3 !   11.1   0.0   5.1e-05      0.23     190     256 ..     156     218 ..     140     219 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.083
                   EEEE-STTTCGGGGTT CS
  Abhydrolase_1  3 lvilhGlpgssdvwae 18
                   l++lhG++ ++ v+ e
     CCD24481.1  9 LLFLHGFLQNGKVFSE 24
                   89*******9999876 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.048
                    EEEETHHHHHHHHHHHH CS
  Abhydrolase_1  77 lvGhSmGGmialayaae 93 
                    +vG+S+G ++++    +
     CCD24481.1 107 IVGFSQGAALSTIITNK 123
                    69********9987665 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 5.1e-05
                    HHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 190 eqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafleg 256
                     ++++++++++  + ++    + ++++i+gtsD++vp k   +l++l+++++  v +d++ + ++e+
     CCD24481.1 156 LRITERYRDSFTPKKDS----KTKIIFIYGTSDQAVPAKRTQYLCNLFKESEGTVGADSERIKVFEH 218
                    56677777788877666....89***************9999999**99988777777777777766 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.6   0.00026       1.2     109     122 ..     107     120 ..       6     131 .. 0.72
   2 ?    3.0   0.0     0.017        76     155     184 ..     172     201 ..     152     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00026
                    EEEETHHHHHHHHH CS
  Abhydrolase_2 109 igGFSqGaalalyl 122
                    i+GFSqGaal++  
     CCD24481.1 107 IVGFSQGAALSTII 120
                    67*******99865 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.017
                    GG-EEEEEEETT-SSS-HHHHHHHHHHHHT CS
  Abhydrolase_2 155 kklpilqiHgeeDpvvplalgkaakevlkk 184
                     k+ i+ i+g+ D+ vp    + + +++k+
     CCD24481.1 172 SKTKIIFIYGTSDQAVPAKRTQYLCNLFKE 201
                    5789999**********9887776666665 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.2e-05      0.32      82     173 ..      87     202 ..      57     218 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 7.2e-05
         DLH  82 lkaavaylksvpevstkkvgvvGfCmGGalalllaaevpevdaavafYG...........................lspekeleeaakikapilalfge 153
                 l +a++++ s  +++    g+vGf  G+al+  +  +       v+ ++                            +     +  +++k+ i++++g+
  CCD24481.1  87 LTDAINTVTSYIKENGPYDGIVGFSQGAALSTIITNKI---TELVPSHPefkvsviisgysfteadpehegqlritERYRDSFTPKKDSKTKIIFIYGT 182
                 45666666666666666668888888888876655443...33444444444444444488888888888888877777788888999*********** PP

         DLH 154 eDefipadevekleealkaa 173
                  D+ +pa+ ++ l + +k++
  CCD24481.1 183 SDQAVPAKRTQYLCNLFKES 202
                 ********999998888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2045.95
//
Query:       CCD24482.1  [L=516]
Description: hypothetical protein NDAI_0D01680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-35  120.7  32.2    6.4e-35  120.7  32.2    1.9  2  MFS_1     Major Facilitator Superfamily
    0.00033   19.7  40.8    0.00099   18.1  40.8    1.9  1  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7  32.2   7.2e-39   6.4e-35       3     353 .]      83     466 ..      80     466 .. 0.85
   2 ?   -0.2   3.2      0.04   3.6e+02     136     173 ..     464     499 ..     460     512 .. 0.64

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 7.2e-39
       MFS_1   3 laaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlgaga 101
                 ++ +++++ +s+ +++ p  + e ++is+ +  l +t+y +g +++ l+l+++s+ +Grr +++++++l++++ +l ++++++  ++++r+l+G++++a
  CCD24482.1  83 FTSLVITIISSCWTFVSP-KVIERYHISHEVSVLGITFYIFGLGFGPLFLSPISELYGRRLTFIFSMTLSIIWQCLTTWSHNVVGMMFGRFLSGFFGSA 180
                 666777777777777777.888********99999999***********************************66666888888*************** PP

       MFS_1 102 lfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee............ 188
                 ++++++  i+d+f k   +  ++l++++   G++lgp+++g+l+   ++r+vf  l i+s +++vl+++ +pe++++    +++e+             
  CCD24482.1 181 FLSIAGGSISDIFDKATITIPMSLYTLSCFYGPVLGPIVSGALY-RENYRWVFATLLIASGVCLVLIIFTIPETYKPILLIKKAERMrkergderycap 278
                 ********************************************.6679****************99999999999999999888889*9999999999 PP

       MFS_1 189 ...........kgtgpaplvpawkallkdpvlw.illialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdr..... 270
                            +++  ++ +p + +l+ dp +  +++++ l+ + +++++++ +p ++++ +g++ +++++    l+++vg+ la  ++ + ++     
  CCD24482.1 279 lertrkessfvSSVLLSSKRP-FLLLFLDPMMGvLCFYTGLVLA-IVYLYFVAFPYIFKKLYGFG-VMQIA-CCYLGMMVGMTLAAPTSLIFQKryemn 373
                 996555544444444444444.8888888866455666666665.5555666666667*******.77777.899999999999999999996669988 PP

       MFS_1 271 .......lgrrrrlllallllllaalglallavtssavllll....vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                          ++ r    + +++++ +gl+++a+t  + ++++    +++++G g++fvf+ ++++++d +  ++a++ ++ +++++s ++ ++p
  CCD24482.1 374 viknnniRTPEMRFEPLFYGAFCCPIGLMIFAWTCYQNVHWMgpmiGSAIFGSGVFFVFVGVFNYTVDAYR-RYAASGMACNSFVRSTMSGIFP 466
                 87777775568889999999**************5555555544558888********************5.***************9998887 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.04
       MFS_1 136 lgpllggllasslgWravfyilaivsllafvlfllllp 173
                 + pl+g  ++   g  ++ ++la v++l++ +   +l+
  CCD24482.1 464 IFPLFGLQMYKGMGINWAGFLLAMVTILMIPV--PFLF 499
                 56777777777777777777777777777553..3332 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1  40.8   1.1e-07   0.00099      44     437 ..     109     500 ..      65     502 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.1e-07
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                 s   s l   ++++G  +G lf++++++ +GR+ +++++ +l++i ++l+ +++   +v  +++gR+l+G++  ++  ++   is i  k+   + +sl
  CCD24482.1 109 SHEVSVLGITFYIFGLGFGPLFLSPISELYGRRLTFIFSMTLSIIWQCLTTWSH---NVVGMMFGRFLSGFFGSAFLSIAGGSISDIFDKATITIPMSL 204
                 44567778889999999*************************************...9999999*********************************** PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCC.HHHHHHHHHHGGGS---..HHHHHHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.. CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglq.lvpallllilllflPES..Prylvekgkeeeakevlaklrgeedadrelaeekdsleaeqeee 238
                 y l++  G +++ i+  +l + ++    r+ ++   +++ + l+++++++PE+  P  l++k ++ + +++ ++     +++r+    ++s   +++  
  CCD24482.1 205 YTLSCFYGPVLGPIVSGALYRENY----RWVFATLlIASGVCLVLIIFTIPETykPILLIKKAERMRKERGDERYCAPLERTRKESSFVSSVLLSSK-- 297
                 *************99887755554....777765505566777788899****65666666666667777777754445555555555555544422.. PP

                 ...HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHT.TTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHH............. CS
    Sugar_tr 239 kaswkellssktvrqrlligvvlqifqqltGinaimyys.ptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllG............. 323
                     +++l     +   ++gv++  +  +  i ++++ + p+if++l     +++   +  + + +t++a +++  f +R+ + +              
  CCD24482.1 298 ----RPFLLL---FLDPMMGVLCFYTGLVLAIVYLYFVAfPYIFKKLYGFGVMQIACCYLGMMVGMTLAA-PTSLIFQKRYEMNVIknnnirtpemrfe 388
                 ....222222...3345677777777777777777777679*****998888888888888888888888.99999*9999999999************ PP

                 ..HHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHH CS
    Sugar_tr 324 ..aagmaicfvilgivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvfl 420
                   + g+++c + l i a  + ++  +++ ++  +i+   ++f   + +v+  +  +    +  ++++a+  +v  +++ +  l+  ++ + +g  + ++
  CCD24482.1 389 plFYGAFCCPIGLMIFAWTCYQNVHWMGPMIGSAIFGSGVFFV--FVGVFN-YTVDA-YRRYAASGMACNSFVRSTMSGIFPLFGLQMYKGMGINWAGF 483
                 8555555555555455555555558999888888888888887..445553.33454.56788999***************************999999 PP

                 HHHHHHHHHHHHHHHHS CS
    Sugar_tr 421 vfaglavlfiifvfffv 437
                 + a++ +l+i + f+f+
  CCD24482.1 484 LLAMVTILMIPVPFLFT 500
                 99999999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       989  (0.055162); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.92
# Mc/sec: 1691.11
//
Query:       CCD24483.1  [L=310]
Description: hypothetical protein NDAI_0D01690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.6e-68  231.2   0.0    1.8e-68  231.0   0.0    1.0  1  Inositol_P  Inositol monophosphatase family
  ------ inclusion threshold ------
      0.072   13.1   0.4       0.11   12.5   0.4    1.3  1  DUF327      Protein of unknown function (DUF327)


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.0   0.0     2e-72   1.8e-68       1     258 [.      30     301 ..      30     310 .] 0.92

  Alignments for each domain:
  == domain 1  score: 231.0 bits;  conditional E-value: 2e-72
                 CCHHHHHHHHHHHH.HHHHHHHHHTTTSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCCCT.SSSSSEEEEEEEEETHHH CS
  Inositol_P   1 dleevtkaavelaa.kagevlreefsenelvieekskegeedlvtaadeaveelilealaekfpshkilgeetlakgekseltedgltwivDPiDGTkn 98 
                 dl+++ k+ ++la+ k+g++++ + + ++ + + k++++++d+vt++d++ve+li+++l++++p+ +++gee++ kg  +++t+d +t+ivDPiDGT+n
  CCD24483.1  30 DLRSIEKFLCKLATeKVGTIIKTKSG-TQQTYDLKTGSRKVDIVTEIDKQVEKLIWDSLKTEYPTFQFIGEESYVKGI-TKITDD-PTFIVDPIDGTTN 125
                 6788999******************9.***************************************************.9*****.************* PP

                 HHHT-SG-EEEEEEEETTEEEEEEEEETTTTEEECEETTTEEEETCEEEEECTTS.....EGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCH.... CS
  Inositol_P  99 FvrgipqvaVsigllvegkpvlGviaqPllgqlysaakgkGaflngeklplsrap.....piseallvtlfavssrkdtseasllekvesavsae.... 188
                 Fv+ +p  ++sigl+ +++pv+Gvi++P+l+ l+sa+kg G  +nge +  +++       + ++++v+l ++s+r+  + ++ ++  e ++s+     
  CCD24483.1 126 FVHDFPFSCTSIGLTINKEPVVGVIYNPHLDLLISASKGYGVRINGEDFDHVEKLgsmgpLLLNKSVVALQPGSAREGKNFKIKMATFENLLSCDggfv 224
                 **********************************************88877777778888999999********************************* PP

                 .EEEBESSHHHHHHHHHHTSTSEEEEEC.EBHHHHHHHHHHHHHTTEEEEESSSC.......SSSTTSSEEEEESCHH CS
  Inositol_P 189 .gvrsvgssalklaavaeGkadaylefgrekkWDhAAGeaileeaGGvvtdakge.......grlllargiiaanqke 258
                  g+r++gssa++la++a+G +day++ g ++ WD++AG++il+e GG+v+ a+         +r++la +++    ++
  CCD24483.1 225 hGFRNIGSSAMSLAYIAMGYLDAYWDGG-CYSWDVCAGWCILNETGGRVVGANPLewdigvdNRTYLAVRGTKRGDEK 301
                 ****************************.***********************99966665555555555554444444 PP

>> DUF327  Protein of unknown function (DUF327)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4   1.2e-05      0.11      80     137 ..      46     105 ..      14     107 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHT....-----HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH CS
      DUF327  80 vknslklkk..ersldrkgrsrvykivkeiDekldeLteellkeekealdilakideIkG 137
                 v   +k k+  ++  d+k  sr+  iv+eiD+++++L  + lk+e  +++ + +   +kG
  CCD24483.1  46 VGTIIKTKSgtQQTYDLKTGSRKVDIVTEIDKQVEKLIWDSLKTEYPTFQFIGEESYVKG 105
                 44455555555778899999************************9999998876655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2193.51
//
Query:       CCD24484.1  [L=578]
Description: hypothetical protein NDAI_0D01700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4343.38
//
Query:       CCD24485.1  [L=368]
Description: hypothetical protein NDAI_0D01710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1344  (0.0749624); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2849.75
//
Query:       CCD24486.1  [L=228]
Description: hypothetical protein NDAI_0D01720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-05   24.4   0.0      3e-05   23.8   0.0    1.2  1  DUF4637         Domain of unknown function (DUF4637)
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.014   14.8   0.0    1.1  1  Glyco_hydro_42  Beta-galactosidase
       0.55    8.3   7.2       0.79    7.8   7.2    1.1  1  HSP70           Hsp70 protein
       0.69    8.8   5.5       0.94    8.3   5.5    1.2  1  DUF2722         Protein of unknown function (DUF2722)
        2.6    6.5   7.1        3.8    5.9   6.7    1.4  2  RRN3            RNA polymerase I specific transcription initi


Domain annotation for each model (and alignments):
>> DUF4637  Domain of unknown function (DUF4637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   8.3e-09     3e-05      22     105 ..     129     211 ..     114     220 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 8.3e-09
     DUF4637  22 aeeeseeedeeedraeeesaaegeeesreaeeaegrekgsvsysPlrqessaqev.allrradsgfwgwlsPlallsglaaPadr 105
                  ee ++++d+++d+   ++ +e+ ++++e ++++  +k+ vsy P+     a  + ++lr++++ f g++  ++ l +  + +dr
  CCD24486.1 129 VEETDDDDDDTKDKL--KNRKEKTNKREEKKDNDDTKKKDVSYDPILMFGGALSIpSSLRQCQTNFKGCIPLFSDLISCRMKIDR 211
                 344444444443333..3444444444555555555589******9887777666489************999999999999998 PP

>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.9e-06     0.014     127     180 ..      36      90 ..      33     127 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.9e-06
                     TTEEEEE-SSSTTTT.S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---S CS
  Glyco_hydro_42 127 pavilwhidnEygch.ecycetceeaFrkwlkekYgtidelneawgtafWsqeys 180
                     p+++l ++   y++  e  ++++ + F++  +++Y++ d ln ++g ++W ++y 
      CCD24486.1  36 PYIHLLNLLSRYDQLlEQLSNSISTGFHNLSRANYHNKDSLNGRYGKDYWDESYV 90 
                     555555555566666678899999****************************995 PP

>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.2   0.00022      0.79     476     531 ..     109     163 ..     105     170 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00022
                 TSCEEEEEEETTTCCEEEEEEECCSSSBHHHHHHHHHHHHHCHHHHHHHHHHHHHH CS
       HSP70 476 nGiltvsakdketgkeeeitieaseglseeeiekmvkdaeesaeedkkkkeaieak 531
                 +Gi+++  k+ +t+++++i +e++++ ++++ +k+ + +e+++++++kk +  ++k
  CCD24486.1 109 QGIVHIVRKKLHTDEKADIIVEETDDDDDDTKDKLKNRKEKTNKREEKKDND-DTK 163
                 7****************************************99999887766.443 PP

>> DUF2722  Protein of unknown function (DUF2722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.5   0.00026      0.94     385     430 ..     123     166 ..     100     178 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00026
     DUF2722 385 nsaiasqe.keddddddddekerkkeeekdkekdsikadddkdlsmd 430
                 ++a++  e  +ddddd++  ++ k+ +ek++++ + k+d+d++ ++d
  CCD24486.1 123 EKADIIVEeTDDDDDDTK--DKLKNRKEKTNKR-EEKKDNDDTKKKD 166
                 444433330333333333..3333333333333.3344455554444 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.47   1.7e+03      97     117 ..      43      63 ..      18      78 .. 0.58
   2 ?    5.9   6.7    0.0011       3.8     194     253 ..     107     167 ..      92     176 .. 0.52

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.47
        RRN3  97 Lvsaqpkylsevlsklvqnft 117
                 L+s+  + l++ ++++ ++f+
  CCD24486.1  43 LLSRYDQLLEQLSNSISTGFH 63 
                 334444444444444444443 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0011
        RRN3 194 lsedileliverlikiDV..e.iqveledlddeedeeleeeleededdedddeddeesdlddl 253
                 l++ i++ iv + ++ D   + i  e +d dd+++++l+++ e+ +++ ++++d+++ + +d+
  CCD24486.1 107 LQQGIVH-IVRKKLHTDEkaDiIVEETDDDDDDTKDKLKNRKEK-TNKREEKKDNDDTKKKDV 167
                 5555555.445555556523213345556666665555555433.222222333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1743  (0.0972168); expected 358.6 (0.02)
Passed bias filter:                      687  (0.0383178); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 1694.25
//
Query:       CCD24487.1  [L=132]
Description: hypothetical protein NDAI_0D01730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-23   82.2   0.2    3.3e-23   81.5   0.2    1.4  1  IGR       IGR protein motif
     0.0098   16.0   0.0      0.019   15.0   0.0    1.5  1  SAM_2     SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> IGR  IGR protein motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.2   3.7e-27   3.3e-23       2      54 ..      39      92 ..      38      93 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 3.7e-27
         IGR  2 tFLkkIGRnceehaekfes.wekLfelsskqlkelGipvrqRRYiLrwrekyrq 54
                +FL+kIGRnc e++e++e+ w++L+++++k lke+GipvrqR+YiL+++e++rq
  CCD24487.1 39 AFLTKIGRNCTEYTETYENqWDNLLKWDGKMLKEKGIPVRQRKYILNQVENLRQ 92
                7****************************************************8 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.2e-06     0.019       5      66 .]      33      91 ..      30      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.2e-06
                HHHHHHHHHHHT..TTGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHHHHHH CS
       SAM_2  5 sledvaeWLrsi..glkqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkkiqelk 66
                +l+dv+ +L +i  ++ +yt+ ++ ++++    ll+ + ++Lk+ Gi  v +rk il+++++l+
  CCD24487.1 33 KLPDVSAFLTKIgrNCTEYTETYE-NQWDN---LLKWDGKMLKEKGI-PVRQRKYILNQVENLR 91
                6789******997799******96.67999...9*************.89999********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1067.66
//
Query:       CCD24488.1  [L=309]
Description: hypothetical protein NDAI_0D01740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-53  178.1   0.1    9.8e-53  177.5   0.1    1.3  1  Med6       MED6 mediator sub complex component
  ------ inclusion threshold ------
      0.042   13.2   0.0      0.073   12.5   0.0    1.4  1  CoA_trans  Coenzyme A transferase


Domain annotation for each model (and alignments):
>> Med6  MED6 mediator sub complex component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.5   0.1   1.1e-56   9.8e-53       1     133 []       8     201 ..       8     201 .. 0.97

  Alignments for each domain:
  == domain 1  score: 177.5 bits;  conditional E-value: 1.1e-56
        Med6   1 iqwkspewlqalgLtennvldYFaespFydktsnNevlkmqrqfnqaaeeal............................................... 52 
                 +qwkspew+qa+gL ++nvldYF+espF+dktsnN+v+kmqrqf+q + +                                                 
  CCD24488.1   8 LQWKSPEWIQAFGLGTENVLDYFSESPFFDKTSNNHVIKMQRQFSQLPPAPNggetngntdpqrdangnfipigastnidgssssnlttfkyvdpirra 106
                 69*********************************************988867888899999999999******************************* PP

        Med6  53 ..............LkkmkGleyvlahvqepdlfvirkqerksatevtvlaaYyiiggniYqapslysvvqsrllsalsslskalkelsslakfs 133
                               L+k+kG+eyvla v+epd+++irkq+r s++++++l++Yyiig+n+Yq+p+++++vqsrl+s++ +lsk+l+++ +l++f+
  CCD24488.1 107 ilnryplhamleteLMKLKGIEYVLADVSEPDFWLIRKQRRYSREQIEILQDYYIIGANVYQSPTVFNIVQSRLMSTSLHLSKTLEQIYKLTQFE 201
                 *******************************************************************************************9995 PP

>> CoA_trans  Coenzyme A transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   8.1e-06     0.073     110     167 ..      70     155 ..      69     178 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 8.1e-06
                 TEETTEEEESTTTTSHGGTT............................ESEEEEETTEEEEEEESSSEEEEEEECCEEETTCSEES CS
   CoA_trans 110 glpelgfltntgigtlvapk............................lkkvpgfgGaeyilepalkadvalikaskadeegnlvf 167
                 + + +g++ ++g  t +++                               ++   +G ey+l  + ++d++li+ +++ + + + +
  CCD24488.1  70 QRDANGNFIPIGASTNIDGSsssnlttfkyvdpirrailnryplhamlETELMKLKGIEYVLADVSEPDFWLIRKQRRYSREQIEI 155
                 66788999999999999999998888888888889999999999999855999999**********************99888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2261.82
//
Query:       CCD24489.1  [L=564]
Description: hypothetical protein NDAI_0D01750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-31  109.7  23.2    1.4e-31  109.7  23.2    1.7  2  MFS_1     Major Facilitator Superfamily
    3.4e-08   33.2   1.6    3.4e-08   33.2   1.6    2.2  2  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
        0.1   12.4   0.2        0.2   11.5   0.2    1.4  1  BrkDBD    Brinker DNA-binding domain
       0.11   12.8   0.1         28    5.2   0.0    2.9  2  ERGIC_N   Endoplasmic Reticulum-Golgi Intermediate Compartmen


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7  23.2   3.2e-35   1.4e-31       2     348 ..     107     479 ..     106     490 .. 0.77
   2 ?    1.2   0.6      0.03   1.3e+02     241     296 ..     467     521 ..     453     525 .. 0.64

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 3.2e-35
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavasl.plGrlsdrfGrrr.vlllglllfalglllllfa.sslwlllvlrvlqGl 97 
                 +l++++ +++ + +g+a+ + l edlg+ +++++++ +++++g+++++l p+ ++ +r      +l l ++++++ l+l +++  +++++++lrvl G 
  CCD24489.1 107 CLLYAVQFMDKTSTGSAAVMGLREDLGMHGDQYSWVGSAFYFGYLFMNLgPVQFIFQRSDKMAkLLALFVVIWGILLALHAVPsVNYPAFIALRVLLGC 205
                 78999***************************************99998777888777655555888888888888344443357888*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllllpeepperkrkspkeee.. 188
                 ++++++p   +++a++++ ee+   + ++ ++++lG+i+  +++  ++ +        Wr++f+i +i++++++ l+++++p++p++ k  s++e++  
  CCD24489.1 206 AESVVTPCFTIITAQYWKTEEQFTRVCIWFGMNGLGSIILSAIAYGVYVHEDsysikgWRLLFVITGILTIFVGGLIYFWIPDDPSKAKFLSKREKLmv 304
                 ****************************************999998884433678999***************************************** PP

       MFS_1 189 ........kgtgpaplvp..awkallkdpvlwillialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrls.dr..lg 272
                         +g g++++++  +++  lkd   w++++  ++  + + g++ +l ++l++++g+s    +l+++  +++ l+g++l+ +++ ++ ++    
  CCD24489.1 305 verirsnqQGFGNQQIKQyqIIE-ALKDVRTWLYFLFTVSSNIPNGGISNFLSILLHSDFGYStkDTFLISIPTGAVELIGCPLFGILAIYAaNKrvPF 402
                 *****999566666666653233.44444456444444444557888******************55999999**********9666666665886633 PP

       MFS_1 273 rrrrlllallllllaalglallavt.........ssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslg 348
                 ++ rl +a+++++la+++ ++l+++               +++ ++  + + +v + + a  s ++ +    t+s+++ +a++++
  CCD24489.1 403 WKYRLSWAIFAAILALIASCMLGFAngskkarlaG-----AYLWYISPVSYICVISNISANSSGYTKK---WTVSSITLVAYAAS 479
                 37788888888888888888888888788444443.....4455555555555555555555555522...23333333333333 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.03
       MFS_1 241 sglllaglllallalvgail..allagrlsdrlgrrrrlllallllllaalglallav 296
                 + + +++  l ++a+ ++++   ++a++  +  g++  +++ ++++++++ +l+l++ 
  CCD24489.1 467 T-VSSIT--LVAYAASNLAGpqTFIASQAPQYHGAKVSMVVCYACMIIILSALLLINI 521
                 3.33333..3333333333333777777777788888888888888888888888875 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   1.6   7.6e-12   3.4e-08      19     166 ..     128     279 ..     125     304 .. 0.79
   2 ?    1.8   1.8     0.027   1.2e+02     187     246 ..     396     456 ..     391     529 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 7.6e-12
       MFS_4  19 llaegqlslsqagllaaaNylGYL...vGallaafalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaar 114
                 l++++++   q +++++a y GYL   +G + ++f++s + ++l +l  ++   ll+l  +   +  af+++R+l+G a  vv    + +  +  +  +
  CCD24489.1 128 LREDLGMHGDQYSWVGSAFYFGYLfmnLGPVQFIFQRSDKMAKLLALFVVIWGILLALHAVPSVNYPAFIALRVLLGCAESVVTPCFTIITAQYWKTEE 226
                 67888889999*************6666****************99999999999999999999***************99998888777766655444 PP

       MFS_4 115 rervgallfaGvGlGiavsgllvllllqlglsassl.Wlalavlsavllllva 166
                 + +   + f+  GlG ++ + +++ + +++ s s   W +l v+  +l++ v 
  CCD24489.1 227 QFTRVCIWFGMNGLGSIILSAIAYGVYVHEDSYSIKgWRLLFVITGILTIFVG 279
                 444556778888***6666666666666555555445***********99874 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.027
       MFS_4 187 eqkslpllalllaYglaGfGYiitatFlvaiardgaggalleallWllvGlaaivgv.lvw 246
                 ++k +p +++ l + ++++ + ++a  +  +a+   +++l+ a lW +  ++ i  +  ++
  CCD24489.1 396 ANKRVPFWKYRLSWAIFAAILALIASCMLGFANGSKKARLAGAYLWYISPVSYICVIsNIS 456
                 6788999*****************************************9999875442222 PP

>> BrkDBD  Brinker DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   4.4e-05       0.2       7      46 ..     297     336 ..     292     338 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.4e-05
                 -HHHHHHHHHHHHH-TTTTT-HHHHHHHTTS-H..HHHHHHH CS
      BrkDBD   7 sasfKLqvvesfesdndCkGdyRAvAkkynisr..knvekWl 46 
                 s  +KL+vve  +s+ +  G++    k+y i +  k v+ Wl
  CCD24489.1 297 SKREKLMVVERIRSNQQGFGNQQ--IKQYQIIEalKDVRTWL 336
                 5679*****************97..59****98779*****8 PP

>> ERGIC_N  Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.012        56      50      87 ..      82     119 ..      61     122 .. 0.84
   2 ?    5.2   0.0    0.0062        28      17      53 ..     493     531 ..     488     550 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.012
                 EEEEE--S--SEEEEEEEEEE.SS-GGGEEEEEEETTE CS
     ERGIC_N  50 eelvvdksrsekleinlditfpalpCellsldvqDesg 87 
                  e+ + ++++ kl+ ++d+ ++ l C l  ++ +D++ 
  CCD24489.1  82 REIDITTEEDIKLRWKIDLCMFPLMCLLYAVQFMDKTS 119
                 4556667788899999*******************986 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0062
                 XXXXXXXXXXXXXXXXXXXXXXXXX..XX.XXX-EEEEE CS
     ERGIC_N  17 ktlsGgiislvcillilfLllselt..eylttevkeelv 53 
                 +  +G+ +s+v++  +++++ls l   + ++++ + ++ 
  CCD24489.1 493 PQYHGAKVSMVVCYACMIIILSALLliNIRENKRRDKMA 531
                 7789******99999999998876522444555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3863.32
//
Query:       CCD24490.1  [L=203]
Description: hypothetical protein NDAI_0D01760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-45  155.2   0.1      2e-45  154.9   0.1    1.1  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.9   0.1   1.1e-49     2e-45       2     155 ..      35     189 ..      34     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 154.9 bits;  conditional E-value: 1.1e-49
  Pro_isomerase   2 vdietss..kGrivieLfadkaPktvenFlklvkeg....fYdgttFhRvikgfmvqgGdptgktsageqekkggesi..raipdEitsklkh.kr 88 
                    +di++++   Griv+ L+++++PktvenF +l+ ++     Y +++FhRvi++fm+qgGd+t+++        gg+si   +++dE+ +k+kh k+
     CCD24490.1  35 FDITHGDekVGRIVMGLYGKTVPKTVENFYQLTISKdpkmGYLQSIFHRVIPNFMIQGGDFTHSSG--I----GGKSIygPRFKDEN-FKIKHdKP 123
                    6788877767***********************9778888********************999844..3....333222269*****.89999899 PP

  Pro_isomerase  89 GalamartgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetde.erpkknvkivs 155
                    G l+ma++g  ++++gsqFfIt+ ++p+ldg+++vFG+V++Gmd+v  ie+v++d+ + p k+v+i  
     CCD24490.1 124 GKLSMANAG--KDTNGSQFFITTVATPWLDGHHVVFGEVLDGMDIVHYIENVPRDRrDVPLKKVQISA 189
                    ********8..6****************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1451.29
//
Query:       CCD24491.1  [L=785]
Description: hypothetical protein NDAI_0D01770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-07   31.5   7.2    2.2e-07   30.9   7.2    1.3  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   7.2   1.2e-11   2.2e-07       2      37 ..      19      54 ..      18      57 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.2e-11
                S-HHHHHCT---STSSSS-HHHHHCT.HHHCCCCTCC CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkkln.leCtfysess 37
                aC +Crk+K+ Cd+ +P C+nC +l  l+Ct y+ + 
  CCD24491.1 19 ACVRCRKRKIGCDRVHPICGNCFRLKrLDCT-YPLKD 54
                9***********************999****.99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1093  (0.0609627); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5681.45
//
Query:       CCD24492.1  [L=106]
Description: hypothetical protein NDAI_0D01780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       197  (0.0109878); expected 358.6 (0.02)
Passed bias filter:                      178  (0.00992805); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 852.27
//
Query:       CCD24493.1  [L=1041]
Description: hypothetical protein NDAI_0D01790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.5e-113  377.7   0.3   4.5e-113  377.7   0.3    1.8  3  RPN1_RPN2_N     RPN1/RPN2 N-terminal domain
    4.4e-29  100.3   0.0    8.3e-29   99.4   0.0    1.5  1  RPN1_C          26S proteasome non-ATPase regulatory subunit 
    5.1e-25   86.6  13.9      2e-06   28.0   0.2    8.4  7  PC_rep          Proteasome/cyclosome repeat
    0.00054   20.3   0.6        2.2    8.7   0.0    4.5  5  HEAT_2          HEAT repeats
  ------ inclusion threshold ------
        4.1    5.8  21.7       0.01   14.5   9.2    2.1  2  Macoilin        Macoilin family


Domain annotation for each model (and alignments):
>> RPN1_RPN2_N  RPN1/RPN2 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.7   0.3  1.2e-116  4.5e-113       1     308 [.      51     365 ..      51     366 .. 0.96
   2 ?   -7.7   4.7         5   1.8e+04     103     129 ..     679     705 ..     668     721 .. 0.48
   3 ?   -4.1   0.0       2.3   8.2e+03     180     206 ..     871     898 ..     870     904 .. 0.70

  Alignments for each domain:
  == domain 1  score: 377.7 bits;  conditional E-value: 1.2e-116
  RPN1_RPN2_N   1 LellverlkdadaelaklaLeaLkeeirtstssmTSvPkPLKfLrphyetlkeiyetlkkskakklladilsvlamtlsdegkresLkyrlegskedi 98 
                  Lellv+rlk++d +l++++L +Lk++i+tstssmT+vPkPLKfLrp y +l ++y++++++++k ++ad+lsvlamt+ d+++++sL+yrl ++  +i
   CCD24493.1  51 LELLVQRLKEDDSSLYETSLTQLKTLIKTSTSSMTAVPKPLKFLRPSYPDLCAVYDKWTDKDMKSNMADVLSVLAMTYGDKEEHDSLRYRLLSDVPNI 148
                  89************************************************************************************************ PP

  RPN1_RPN2_N  99 gsWGheYvrhLaaeiaeeyqerqeeekee..............etkekkkkvkellelvkeivpfllkhnaeaeAvDLllEvekleklvklvdeenyq 182
                  +sWGheY+rhL+ ei+e+y +   e++++              +    + +++++++l+ eivp++lkhn+e eAvDLl Eve+++kl  +vde++yq
   CCD24493.1 149 ESWGHEYIRHLSLEIGEAYFTHVVEREAQihgyawdptkvatpSPPPIDFQKDSIINLALEIVPYYLKHNGEEEAVDLLFEVESVDKLPPFVDENTYQ 246
                  *******************999988877788888887765443333677899********************************************** PP

  RPN1_RPN2_N 183 rvclYLlscakylaepddvellrvafeiyrklkkyseaLrvalrlndkelvkevfkaaedklvkkQlayllarqqvkleleeledededlneilsnek 280
                  r+c+Y++ c+++l++p+d + l++af+iy+++++++eaL +a+rl+++el+++vf+a++dk++++Qlay+l++q++++e+e        +++i++n+k
   CCD24493.1 247 RICQYMIACVPLLPQPEDKTYLNTAFSIYLTQSQLPEALALAIRLGNEELIRSVFDATSDKTMHQQLAYILSTQKISFEYE-------GIQDIIGNTK 337
                  ******************************************************************************999.......79******** PP

  RPN1_RPN2_N 281 lsehfkaLakdLdvlepktpediYKshL 308
                  lsehf+ Lak+L+++ pktpediYKshL
   CCD24493.1 338 LSEHFLYLAKELNLTIPKTPEDIYKSHL 365
                  ***************************9 PP

  == domain 2  score: -7.7 bits;  conditional E-value: 5
  RPN1_RPN2_N 103 heYvrhLaaeiaeeyqerqeeekeeet 129
                  heY ++ + e ++e+++++e+e+ee++
   CCD24493.1 679 HEYENEHEHEHEHEHEHENENENEENN 705
                  344444444444444444333333322 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 2.3
  RPN1_RPN2_N 180 nyqrvclYLlscakylaepddv.ellrv 206
                  n +r  + L ++a+y ++++d+  + r+
   CCD24493.1 871 NNARLAQLLRQLASYYSREQDAlFITRI 898
                  6778888888888888887777444444 PP

>> RPN1_C  26S proteasome non-ATPase regulatory subunit RPN1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0   2.3e-32   8.3e-29       1      54 []     984    1037 ..     984    1037 .. 1.00

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 2.3e-32
      RPN1_C    1 VgqaGkpktItGfqThttPVlLaageRAELateeYiplssvLEgivilkknpdy 54  
                  VgqaGkpktItG+ T++tPVlL++geRAEL+++eYi+ls+ LEg+vilkknpdy
  CCD24493.1  984 VGQAGKPKTITGWITQSTPVLLNHGERAELENDEYISLSKSLEGVVILKKNPDY 1037
                  9****************************************************9 PP

>> PC_rep  Proteasome/cyclosome repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.4e-05     0.087       1      34 [.     419     450 ..     419     451 .. 0.93
   2 !   18.4   0.2   6.1e-07    0.0022       1      32 [.     452     486 ..     452     489 .. 0.92
   3 !   28.0   0.2   5.5e-10     2e-06       1      30 [.     490     519 ..     490     522 .. 0.95
   4 ?    5.0   0.0      0.01        37       2      25 ..     528     552 ..     527     561 .. 0.78
   5 ?    3.5   0.0     0.032   1.1e+02       3      22 ..     569     590 ..     568     594 .. 0.78
   6 !   17.8   0.0   9.4e-07    0.0034       2      31 ..     859     888 ..     858     891 .. 0.92
   7 ?    2.2   0.1     0.083     3e+02       4      20 ..     898     913 ..     898     914 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHHSSHHH CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdtsaevr 34 
                 +A++++G i+ + + + ++++L++yl+  ++e++
  CCD24493.1 419 SAVASIGSIYQW-NLD-GLQQLDKYLYVEENEIK 450
                 699*********.999.9*********9999986 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 6.1e-07
                 HHHHHHHHHCTTSTCH...HHHHHHHHHHHHHSSH CS
      PC_rep   1 GAllALGlihaGsgne...eaislLkpylsdtsae 32 
                 GAll++G+  +G+ ++   +a+ lL++y+ +++a+
  CCD24493.1 452 GALLGIGISACGVHDGdvePALLLLQEYVNNPNAK 486
                 9***********88888*************99987 PP

  == domain 3  score: 28.0 bits;  conditional E-value: 5.5e-10
                 HHHHHHHHHCTTSTCHHHHHHHHHHHHHHS CS
      PC_rep   1 GAllALGlihaGsgneeaislLkpylsdts 30 
                 +++l+LG+++aGs nee++ lL+p++ dts
  CCD24493.1 490 ASILGLGIAFAGSANEEVLGLLLPIAADTS 519
                 589*************************97 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.01
                 HHHHHHHHCTTSTCH.HHHHHHHHH CS
      PC_rep   2 AllALGlihaGsgne.eaislLkpy 25 
                 A+l+LG i+ G++n+  +++++++y
  CCD24493.1 528 ACLSLGHIFVGTCNGdITTAIIDNY 552
                 9**************6555555565 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.032
                 HHHHHHHCTTSTCH..HHHHHH CS
      PC_rep   3 llALGlihaGsgne..eaislL 22 
                 +l+LGl+++G  ++  ++ + L
  CCD24493.1 569 ALSLGLLYLGKPDQisDIADTL 590
                 79********888766665555 PP

  == domain 6  score: 17.8 bits;  conditional E-value: 9.4e-07
                 HHHHHHHHCTTSTCHHHHHHHHHHHHHHSS CS
      PC_rep   2 AllALGlihaGsgneeaislLkpylsdtsa 31 
                 +++A+Gl + G++n ++ +lL++++s++s 
  CCD24493.1 859 SIFAMGLCGVGTNNARLAQLLRQLASYYSR 888
                 79***********************99875 PP

  == domain 7  score: 2.2 bits;  conditional E-value: 0.083
                 HHHHHHCTTSTCHHHHH CS
      PC_rep   4 lALGlihaGsgneeais 20 
                 +A+Gl+h+G g+  +++
  CCD24493.1 898 IAQGLLHLGKGTM-TMD 913
                 69*******9998.665 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.83     3e+03      61      78 ..      48      65 ..      41      73 .. 0.77
   2 ?   -0.9   0.0      0.64   2.3e+03      24      55 ..     285     319 ..     276     325 .. 0.80
   3 !    5.2   0.0    0.0079        28       4      55 ..     475     530 ..     471     547 .. 0.83
   4 !    8.7   0.0   0.00062       2.2      22      70 ..     826     882 ..     793     900 .. 0.76
   5 ?   -2.2   0.0       1.5   5.5e+03      15      33 ..     974     993 ..     961     998 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.83
      HEAT_2 61 pealpaLkellddddddv 78
                +e+l++L ++l++dd+++
  CCD24493.1 48 KEDLELLVQRLKEDDSSL 65
                678888999999888765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.64
      HEAT_2  24 Lg...rignpealpaLvellededpavRraaaeaL 55 
                 L+   r+gn+e+++ ++++ +d+ ++ + a + + 
  CCD24493.1 285 LAlaiRLGNEELIRSVFDATSDKTMHQQLAYILST 319
                 4444899************9999998888877765 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0079
      HEAT_2   4 LlqalendpdpevrraairaLg....rignpealpaLvellededpavRraaaeaL 55 
                 Llq  +n p+ ++  a i  Lg      +n+e+l +L++++ d++     a++  L
  CCD24493.1 475 LLQEYVNNPNAKLSTASILGLGiafaGSANEEVLGLLLPIAADTSIPFETAVVACL 530
                 7888889999999999999999*9998999***********999977777776655 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00062
      HEAT_2  22 raLg..rignp..ealpaLvellededpavRraaaeaLgaig....dpealpaLkel 70 
                  a+g  +i++p  +++++L +l  d+d +v ++ + a+g +g    + + +++L++l
  CCD24493.1 826 LAMGlvSIADPqmKVFDTLSRLSHDADLDVAMNSIFAMGLCGvgtnNARLAQLLRQL 882
                 444444899887788************************998443223333444443 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 1.5
      HEAT_2  15 evrr.aairaLgrignpeal 33 
                 +vr  +a+++ g+ g p+++
  CCD24493.1 974 NVRVgQAVETVGQAGKPKTI 993
                 57766888999988888765 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   4.6      0.61   2.2e+03     507     552 ..      19      69 ..       2      93 .. 0.39
   2 ?   14.5   9.2   2.8e-06      0.01     234     367 ..     634     765 ..     615     848 .. 0.54

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.61
    Macoilin 507 valaaasrsecteslkskkreleaeikkLekel.....klkeeqirelelk 552
                 v +  + ++ + +  k++ +el  e +kL+++l     +lke++   +e+ 
  CCD24493.1  19 VNIDESVKKTKKKDGKTEEEELSEEDQKLKEDLellvqRLKEDDSSLYETS 69 
                 222222222222223333334444444444444333333444443333333 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 2.8e-06
    Macoilin 234 lsknnhslnkk.dsslklpeley...rekkksakssrsdskkkhehn..esvdsklqekeymenkskskrls..ksessgsesellveesvksksssss 324
                  + n+++ n++ d + ++  l++   ++ ++ +++++++++++heh+  +++++++++++ +en+ ++++ +   +++++++ ++ +ee+v+ + ++++
  CCD24493.1 634 KNANEENENDEdDGTGQINSLSEflgEKASEGETETGEEHEHEHEHEyeNEHEHEHEHEHEHENENENEENNtnDNNEDADQMDVDQEEHVETTGTTEN 732
                 333333333333344455544431102222223333333333333335544444444444444444444333003334444555555555555444433 PP

    Macoilin 325 sssnknskkasags..agssnssskkhsessksvtsssssknskk 367
                 +++ ++s +++ ++   + ++   kk+se+++           +k
  CCD24493.1 733 QTE-PTSTNNAEETkpKEGAQDEEKKKSEKEG-----------EK 765
                 332.2222222211001112222222222222...........22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1041 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2323  (0.129567); expected 358.6 (0.02)
Passed bias filter:                      779  (0.0434492); expected 358.6 (0.02)
Passed Vit filter:                       204  (0.0113782); expected 17.9 (0.001)
Passed Fwd filter:                        85  (0.00474092); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.63u 0.37s 00:00:02.00 Elapsed: 00:00:00.59
# Mc/sec: 5303.43
//
Query:       CCD24494.1  [L=213]
Description: hypothetical protein NDAI_0D01800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-23   81.3  38.9    2.8e-16   59.6  13.3    2.5  3  ATP-synt_C  ATP synthase subunit C
  ------ inclusion threshold ------
        1.6    9.2   3.7         11    6.5   0.8    2.4  2  ATP-synt_8  ATP synthase protein 8


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.5         2   1.8e+04      53      59 ..      23      29 ..      19      34 .. 0.60
   2 !   59.6  13.3   3.2e-20   2.8e-16       1      59 [.      62     120 ..      62     121 .. 0.98
   3 !   34.1  10.8   2.8e-12   2.5e-08       3      60 .]     148     205 ..     146     205 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2
                HHHHHHH CS
  ATP-synt_C 53 gLivali 59
                 Li+ +i
  CCD24494.1 23 YLIITII 29
                5555554 PP

  == domain 2  score: 59.6 bits;  conditional E-value: 3.2e-20
                 HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   1 lgaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivali 59 
                 lg++l++Gls++g+++gi ++g+++i+a +r p+++tk li ++f+e++a+ygLi++++
  CCD24494.1  62 LGIALCIGLSVVGAAWGIFITGASIIGAGVRAPRITTKNLISIIFCEVVAIYGLIISIV 120
                 79*******************************************************97 PP

  == domain 3  score: 34.1 bits;  conditional E-value: 2.8e-12
                 HHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   3 aglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60 
                  g+ vGls l +G+++G++g++++ + a +  lf+k l+i +f  +++l+gLiv+l++
  CCD24494.1 148 GGITVGLSNLVCGVAVGVTGATAAVSDAADSALFVKILVIEIFGSILGLLGLIVGLLM 205
                 599*****************************************************97 PP

>> ATP-synt_8  ATP synthase protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.8    0.0013        11       7      26 ..      18      37 ..      17      41 .. 0.91
   2 ?    2.7   0.1     0.019   1.7e+02      18      45 ..     115     141 ..     108     147 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0013
  ATP-synt_8  7 stWltiillmwltLfiliql 26
                s W+  ++++++t+ il  l
  CCD24494.1 18 SQWFYYLIITIITIYILYKL 37
                78**************9876 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.019
  ATP-synt_8  18 ltLfiliqlkllsftyptnpkskslkli 45 
                 l++ i++++k++    ++++ sks+ ++
  CCD24494.1 115 LIISIVFSSKITVAS-TETLLSKSNLFT 141
                 8899********999.999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1618.90
//
Query:       CCD24495.1  [L=357]
Description: hypothetical protein NDAI_0D01810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-09   38.5   0.0    1.9e-09   37.6   0.0    1.5  1  GHMP_kinases_N  GHMP kinases N terminal domain
    0.00016   22.0   0.0    0.00044   20.5   0.0    1.7  1  GHMP_kinases_C  GHMP kinases C terminal


Domain annotation for each model (and alignments):
>> GHMP_kinases_N  GHMP kinases N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   2.2e-13   1.9e-09       1      66 []      96     157 ..      96     157 .. 0.83

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 2.2e-13
                     EEEEEESSHTTSSSCHHHHHHHHHHHHHHHHTTEHHHHHHHHHHHHHHH...HHHHHHSHHHHHHHHSS CS
  GHMP_kinases_N   1 divikseiPvgaGLGSSAAlavalvaAllallglsleeaklaleaerla...qggngsggDvaasvyGg 66 
                     +++i++ iP+g+GLGSS+A++v++v+ +++         kl+++  r+       + ++++++a+++Gg
      CCD24495.1  96 KVHIHNPIPLGRGLGSSGAAVVGGVVLANEVG-------KLGFTRQRMLdfcLMIERHPDNITAAMMGG 157
                     589*****************************.......5555555555444345569*********98 PP

>> GHMP_kinases_C  GHMP kinases C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     5e-08   0.00044      20      79 ..     271     329 ..     254     337 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5e-08
  GHMP_kinases_C  20 sqrs..elkavvgilppeleellealselG...algaklsGaGgGptvfalfkdkdeaeqvaral 79 
                     +q+   ++  +++ l p l+e+l++    +    lg +lsGa  Gpt+ al+   ++ +++a+++
      CCD24495.1 271 MQDRvhQP--YRKTLIPGLTEILSSVTPTThpgLLGICLSGA--GPTILALA--TENFDDIAQEI 329
                     34447789..***************98777888*********..*******9..33333344433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       255  (0.0142228); expected 358.6 (0.02)
Passed bias filter:                      250  (0.0139439); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2710.22
//
Query:       CCD24496.1  [L=466]
Description: hypothetical protein NDAI_0D01820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-43  149.5   0.0    3.9e-43  147.6   0.0    1.8  2  Peptidase_M16_C  Peptidase M16 inactive domain
    4.9e-41  140.2   0.0    1.7e-40  138.4   0.0    1.9  2  Peptidase_M16    Insulinase (Peptidase family M16)
     0.0055   16.7   0.0      0.015   15.3   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.25   1.5e+03     140     177 ..      98     132 ..      72     137 .. 0.70
   2 !  147.6   0.0   6.5e-47   3.9e-43       2     183 .]     181     373 ..     180     373 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.25
                      EEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHH CS
  Peptidase_M16_C 140 lfgisatadpenveevvevilkelrklkkeglteeele 177
                       +  +a++ +++v +++e++ +++r      +t++el+
       CCD24496.1  98 TMMYQASVFNQDVPKMLELMTETVRYP---NITQQELD 132
                      566778888889999999999988742...24455555 PP

  == domain 2  score: 147.6 bits;  conditional E-value: 6.5e-47
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEES......SSSSEEEEEEEEEEC CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkl......deeqahlslafegps 89 
                      +++  l e+++kfY+pen v ++vG v+he++v+++ ky+gd+++++      ++ ++++a++++++ +++        + e  ++++++eg++
       CCD24496.1 181 ISKYYLNEYRNKFYTPENTVASFVG-VPHEKAVEYASKYLGDWESTN------PPMTQESAHYTGGETCIPPApvfgnlP-ELYYIQIGYEGLP 266
                      6667799******************.******************775......567777788888888888888888645.9************ PP

                      TCTHTTHHHHHHHHHHHHSS...........TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHT.. CS
  Peptidase_M16_C  90 kendeddlalavlntlLggg...........mesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeg.. 170
                      + ++ed++ala+l+tlLggg           m+srLyt+++++   ++++++fn+sy+dsg+fgis+ + pe + ++ e i ++l     ++  
       CCD24496.1 267 I-DHEDIYALATLQTLLGGGgsfsaggpgkgMYSRLYTHVLNQYYFIENCVSFNHSYSDSGIFGISIACLPEAAKQATEIIAQQLYSTFANKnl 359
                      *.*****************************************************************************************889 PP

                      .S-HHHHHHHHHHH CS
  Peptidase_M16_C 171 .lteeeleraknql 183
                       l+ +e++raknql
       CCD24496.1 360 rLSHDEVSRAKNQL 373
                      *************8 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.4   0.0   2.8e-44   1.7e-40       1     148 [.      28     174 ..      28     175 .. 0.99
   2 ?   -1.6   0.1      0.41   2.4e+03      80     135 ..     335     385 ..     331     396 .. 0.52

  Alignments for each domain:
  == domain 1  score: 138.4 bits;  conditional E-value: 2.8e-44
                    EEEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHH CS
  Peptidase_M16   1 rvalesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfk 96 
                    rva+ +d p ++sa+gl+v+aG r e+ +l+G +H+l+++afk+T++ +++ ++e+le lGg++++t+sre+++Y+++v+++d++k+l+++ ++++
     CCD24496.1  28 RVATSND-PGHFSALGLYVGAGPRFENGNLRGSTHILDRLAFKSTEHIDGRTMTETLELLGGNYQCTSSRETMMYQASVFNQDVPKMLELMTETVR 122
                    6899999.**************************************************************************************** PP

                    SBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS-T CS
  Peptidase_M16  97 aplleesevererkvvekeveavdaepekvveenlhaaayrekalgrsllgp 148
                     p ++++e++++++++e+e+++++++p+ +++e lh++ay+ k+lg +ll+p
     CCD24496.1 123 YPNITQQELDEQKLTTEYEIDEIWTKPDLILPELLHTTAYSGKTLGAPLLCP 174
                    ***************************************************9 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.41
                    EGGGHHHHHHHHHHHHHSBTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH CS
  Peptidase_M16  80 lskdlekaldvladvfkaplleesevererkvvekeveavdaepekvveenlhaaa 135
                    l+++ ++a +++a+ +++ ++ ++++         ev+ ++++ + ++++nl+++ 
     CCD24496.1 335 LPEAAKQATEIIAQQLYS-TFANKNLRL----SHDEVSRAKNQLKSSLLMNLESKL 385
                    556666666666666654.444444444....333444444444444455555555 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.4e-06     0.015       9     124 ..     292     433 ..     290     442 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.4e-06
                 SSSHHHHHHHGGGGBS--EEE...EE--TT--HHHHH--B--...............--------.G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   9 GtgKselaerlaaalnrevey...vqltrdtteedlkgrreik......ngttslvdsplvraar.egeilvlDEveraesevlnsLlslleerrllle 97 
                 G gK + ++ + ++ln+ +++   v ++ +++ + ++g    +      ++ t+   + l+  +  +   l  DEv ra+ +  +sLl+ le + + le
  CCD24496.1 292 GPGKGMYSRLYTHVLNQYYFIencVSFNHSYSDSGIFGISI-AclpeaaKQATEIIAQQLYSTFAnKNLRLSHDEVSRAKNQLKSSLLMNLESKLIELE 389
                 899999999******99999822244566777777777544.5588899777777777777666626666889************************** PP

                 -SSSEEE---.......................-EEEEEESS-- CS
       AAA_5  98 eggelvkakndd.ller................frviatanpld 124
                 ++g++++ +n +    +                 r i+t+n  +
  CCD24496.1 390 DMGRQIQLRNRKvPVAKmiekiekltpeditrvARMIFTGNVKN 433
                 ********998766555899999999999999999999999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.37
# Mc/sec: 3786.97
//
Query:       CCD24497.1  [L=1890]
Description: hypothetical protein NDAI_0D01830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.2e-272  904.7  14.3   3.2e-272  904.7  14.3    3.1  3  Myosin_head      Myosin head (motor domain)
    0.00025   20.6   1.0     0.0015   18.1   0.5    2.5  2  AAA_7            P-loop containing dynein motor region
     0.0047   16.9   0.1      0.018   15.0   0.1    2.0  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0073   16.5   0.4     0.0073   16.5   0.4   10.6 11  HALZ             Homeobox associated leucine zipper
  ------ inclusion threshold ------
      0.054   13.5   1.7        1.5    8.8   0.0    3.5  3  AAA_5            AAA domain (dynein-related subfamily)
        0.2   12.1   1.3        7.1    7.1   0.1    3.5  2  RNA_helicase     RNA helicase
       0.26   11.7   0.0       0.26   11.7   0.0    3.7  3  AAA_16           AAA ATPase domain
          7    6.9   9.9        0.3   11.3   0.1    3.8  3  AAA_22           AAA domain


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  904.7  14.3  1.4e-275  3.2e-272       2     677 .]      70     753 ..      69     753 .. 0.97
   2 ?   -4.0   2.8       1.4   3.1e+03     504     604 ..    1367    1472 ..    1360    1485 .. 0.61
   3 ?   -3.7   3.3       1.1   2.5e+03     513     585 ..    1658    1729 ..    1626    1764 .. 0.52

  Alignments for each domain:
  == domain 1  score: 904.7 bits;  conditional E-value: 1.4e-275
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSHH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklkiysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGKt 99 
                  ++++eL++lne+svl nl++Ryk+dliYtysgl+lva+nPy ++kiy+++ i+ ++g ++ee +PHifa+a+eay++ll++k+nqs+l++GEsGAGKt
   CCD24497.1  70 DNMSELTHLNEPSVLYNLENRYKDDLIYTYSGLFLVAINPYSNIKIYTQEYINLFNGSQKEENKPHIFAVAEEAYQNLLSEKQNQSVLVTGESGAGKT 167
                  89************************************************************************************************ PP

                  HHHHHHHHHHHHHSSSSSC............TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT--- CS
  Myosin_head 100 eatKkvlqylasvaeskek............veeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqa 185
                  e+tKk+lqylas+++s+++            ++e+++e+kilqsnPilE+fGnA+tvrn+nssRFGKfi+iefd +gki+ga+ie+YLLEksRv++q+
   CCD24497.1 168 ENTKKILQYLASITSSTTTisnptspnktnfIQEGTFERKILQSNPILESFGNAQTVRNNNSSRFGKFIKIEFDDRGKINGAHIEWYLLEKSRVIEQH 265
                  *****************99************999**************************************************************** PP

                  TT--SBHHHHHHHHCSTHHHHHHTT--..TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSE CS
  Myosin_head 186 keERnyHiFYqllagaseeekkelkle..dvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqa 281
                  ++ERnyHiFYqll g+se+e ++l+l   +++dy yls+ ++ +++g++d+++f+e+ +al ++g++++e+ +if+i+++ilh+Gn+ef +e++++ a
   CCD24497.1 266 PDERNYHIFYQLLTGLSEQELRKLELYskSTSDYYYLSR-SNSSIPGVNDAQDFQELLDALGTVGFTKNEIDDIFKIISIILHVGNVEFVSEKAQQ-A 361
                  **************************866899*******.6899***********************************************99885.6 PP

                  EESSHHHHHHHHHHHTS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-S-SEEEEEEEEE-B---SS CS
  Myosin_head 282 vledeeklekaaellgvdaeelekalvkrriktgkevvskalnveqaevardalakaiyerlFdwlverinkslekkkeekksfiGvLDiaGFEifek 379
                  ++++++  ++ a+llgv +e+ ++a+++++ k+g+e+vs+ ++ +q++++ ++la+++yerlF ++verin+sl++ +  ++++iG+LDiaGFEif++
   CCD24497.1 362 SFKNDQ--SILAKLLGVTVEQWSTAILRPKAKAGREWVSQGKDAKQSRFILNSLARTLYERLFAYIVERINHSLDHGS-MTTNYIGLLDIAGFEIFKH 456
                  666665..789******************************************************************9.999**************** PP

                  B-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHS..SSTSHHHHHHHHHTSTTS-HHHHHHHHHHHH.TTSTTEEE CS
  Myosin_head 380 nsFEqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiek..kplGilslLdeecllpkatdetfleklvkaf.skhakfek 474
                  nsFEqlciny+nEkLqq+Fn+++++lEq+eY+rE+i+w+f+dfg d+qa i Li+k  +p+Gil +Ldee++lpk++d++f +kl++++ +k+ +f++
   CCD24497.1 457 NSFEQLCINYTNEKLQQFFNHHMFILEQNEYMRENIHWDFVDFGKDLQASIHLIDKrgSPMGILPILDEESILPKSSDDSFFSKLISNWdKKSDRFKR 554
                  ********************************************************999******************************566669*99 PP

                  TTSTTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCCCCSBHHHHHHHHHHHHHHH CS
  Myosin_head 475 srlkkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeekeakaeakksekkkkkkkkkkkfktvgskfkeslaeLmkt 572
                  s+l   e++Fi+kHyAg+veY++eg+l+KnkD+l+e ++++l+ss+++l++e f++  ++++++a+ +  ++k k++ +  +t++++++e+l+ L+++
   CCD24497.1 555 SKL---EKCFILKHYAGNVEYNIEGWLSKNKDPLSEYMLNMLSSSSDSLISEFFNNPLTSSSSSASIATMDDKPKNRGSAIRTAAMRHREQLNFLLDQ 649
                  986...9*************************************************9999999999999999999*********************** PP

                  HCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS.SSSHHHHHHHHHHHTTS-GCGEEEC CS
  Myosin_head 573 lestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkllkedakkaveailkeleldkeeykiG 670
                  l++t+phfvRCi+pn++k ak++d++l+l+qlrc+Gvlegiri+r+G+pnRi f+ef+qrYk+la+++   + ++++kk++e ++ +l+l+ + ykiG
   CCD24497.1 650 LSTTHPHFVRCIIPNNRKMAKSFDRKLILDQLRCNGVLEGIRIAREGYPNRIFFKEFFQRYKILASSHDLFS-NSNSKKNCEILIASLDLEPNLYKIG 746
                  *****************************************************************9986444.899********************** PP

                  SSEEEET CS
  Myosin_head 671 ktKiFfr 677
                  +tK+Ff+
   CCD24497.1 747 NTKLFFK 753
                  ******8 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.4
                   HH----HHHHHH..HHTSSSHHHHHHCCSHCHB--.........CSSSECCCCC...SBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT- CS
  Myosin_head  504 nkDtlnedlvel..lksskkkllaelfkeeekeakaeakksekkkkkkkkkkkf...ktvgskfkeslaeLmktlestnphfvRCikpnekkkakk 594 
                   n+D++++  +e+   k  + kl +++ + ++k ++ +++  +++++++ +k++    k     +  + + L++t+ +++  f  C++  ++++++ 
   CCD24497.1 1367 NRDSVTKYEEEVrfHKLENYKLQETIADANNKISHLNHDIRQSQSREELHKEQIvrlKKNLESIEYQKGLLLTTIDQQKKRFDECVQDLHENETQL 1462
                   555554433333103333335555555555553333333333333333333332011333445566778899999999999999999999999988 PP

                   --HHHHHHHH CS
  Myosin_head  595 ldeslvleql 604 
                    + +l+l+q 
   CCD24497.1 1463 NEYKLALKQA 1472
                   8888988886 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 1.1
                   HHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCCCCSBHHHHHHHHHHHHHHHHCTSEEEEEEEE- CS
  Myosin_head  513 vellksskkkllaelfkeeekeakaeakksekkkkkkkkkkkfktvgskfkeslaeLmktlestnphfvRCik 585 
                    +++ ++++++ ++l +++++ +++ a  +e+ + +++++++   + ++ +es+ +L ++l++ + + +   +
   CCD24497.1 1658 KSAMGKTTDDFSKSLQEKDKI-SSNVAYLQETLAFQQEQNARNGLLVKQLQESVDTLKNALNQEKEKNIELYQ 1729
                   334444444444444333333.222222223333333333333444444444444444444444444444333 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.5   6.7e-07    0.0015      31      89 ..     151     207 ..     136     211 .. 0.90
   2 ?   -1.6   0.0      0.71   1.6e+03      54      91 ..     760     797 ..     753     804 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 6.7e-07
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekr 89 
                 k++++vl++G++G GKt  +k++l+ l   +++s t ++s+ ts+n++  i e  +e++
  CCD24497.1 151 KQNQSVLVTGESGAGKTENTKKILQYLA--SITSSTTTISNPTSPNKTNFIQEGTFERK 207
                 68899**********************9..9999**************99999988886 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.71
       AAA_7  54 lkkldkekylsltinfsaqtsanqlqdiiesklekrrk 91 
                 l++ +++k++ ++i +++q   ++++d +  kl++ r 
  CCD24497.1 760 LESRKDQKIKQVIIRLNSQVRGKMIRDEVGGKLKRIRA 797
                 5555679999*******************999998764 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   8.1e-06     0.018      16      58 ..     145     190 ..     131     200 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.1e-06
                 HCH.....TEEEEEEESTTSSHHHHHHHHHHHTT------TTTTSEEE CS
        TsaE  16 kal.....gdvilLeGdLGaGKTtlvrglakalgveevkSPTFtlvee 58 
                 ++l     ++ +l +G+ GaGKT  ++++++ l   +++S T t+ ++
  CCD24497.1 145 QNLlsekqNQSVLVTGESGAGKTENTKKILQYLA--SITSSTTTISNP 190
                 33333333667*********************95..699999999876 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   4.2       4.6     1e+04      22      41 ..     876     896 ..     860     898 .. 0.74
   2 ?   -1.8   0.2       1.7   3.8e+03      17      35 ..     912     927 ..     911     932 .. 0.77
   3 ?    0.8   6.6      0.26   5.9e+02       1      29 [.     949     974 ..     949     998 .. 0.76
   4 ?   -2.0   0.6       1.9   4.3e+03      25      40 ..     993    1009 ..     991    1011 .. 0.79
   5 ?    3.0   0.3     0.052   1.2e+02       9      36 ..    1024    1051 ..    1023    1054 .. 0.91
   6 ?   -3.7   0.0       6.6   1.5e+04      33      41 ..    1069    1077 ..    1068    1078 .. 0.83
   7 ?   -3.7   0.9       6.6   1.5e+04      28      42 ..    1525    1539 ..    1517    1540 .. 0.79
   8 ?    1.6   0.2      0.15   3.4e+02      29      42 ..    1567    1580 ..    1553    1581 .. 0.76
   9 !   16.5   0.4   3.3e-06    0.0073       7      41 ..    1626    1660 ..    1622    1662 .. 0.92
  10 ?   -2.6   6.7       3.1     7e+03       2      42 ..    1705    1745 ..    1704    1746 .. 0.71
  11 ?   -3.5   0.1       5.8   1.3e+04      11      27 ..    1867    1876 ..    1859    1880 .. 0.53

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.6
        HALZ  22 dsLkkenekLk.aelqeLkek 41 
                   L+ e+ekLk +el  L+ k
  CCD24497.1 876 SILETEKEKLKeKELVLLSTK 896
                 578999999973566666655 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.7
        HALZ  17 LksdydsLkkenekLkael 35 
                 Lk   d++++e+ kLk e 
  CCD24497.1 912 LK---DAIEEEKWKLKDEY 927
                 56...88999999998875 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.26
        HALZ   1 KQLErDYdvLKasYdaLksdydsLkkene 29 
                 KQLE  Y +L+   + L+   + L  ++e
  CCD24497.1 949 KQLEEKYQTLQIEVNTLQ---EKLTSQKE 974
                 888888888888888888...66666655 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.9
        HALZ   25 kkenekLka.elqeLke 40  
                  +ke++kL+  e+q+L +
  CCD24497.1  993 LKEKNKLQElEIQKLQN 1009
                  58999998659999976 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.052
        HALZ    9 vLKasYdaLksdydsLkkenekLkaelq 36  
                  +L +s+++ k++   L +en  L+++l 
  CCD24497.1 1024 SLEKSCNSAKTRLGTLADENADLRSQLS 1051
                  588999999*****************96 PP

  == domain 6  score: -3.7 bits;  conditional E-value: 6.6
        HALZ   33 aelqeLkek 41  
                  ae+++Lk+k
  CCD24497.1 1069 AEIERLKAK 1077
                  799999998 PP

  == domain 7  score: -3.7 bits;  conditional E-value: 6.6
        HALZ   28 nekLkaelqeLkekl 42  
                  n+ L a l+ Lke+l
  CCD24497.1 1525 NNLLNADLAHLKERL 1539
                  778999999999987 PP

  == domain 8  score: 1.6 bits;  conditional E-value: 0.15
        HALZ   29 ekLkaelqeLkekl 42  
                   +Lk+e+++Lk kl
  CCD24497.1 1567 TSLKKEVATLKYKL 1580
                  58*********997 PP

  == domain 9  score: 16.5 bits;  conditional E-value: 3.3e-06
        HALZ    7 YdvLKasYdaLksdydsLkkenekLkaelqeLkek 41  
                  Y+ L a+ ++L+s ++sL +e+ +L + l+eLk+ 
  CCD24497.1 1626 YEELIAKVNSLTSTVESLSNEKSNLASRLEELKSA 1660
                  99999****************************86 PP

  == domain 10  score: -2.6 bits;  conditional E-value: 3.1
        HALZ    2 QLErDYdvLKasYdaLksdydsLkkenekLkaelqeLkekl 42  
                  QL    d+LK   ++ k ++  L +en++L +   +Lkekl
  CCD24497.1 1705 QLQESVDTLKNALNQEKEKNIELYQENQTLIKMDSQLKEKL 1745
                  55555566666666667777778889999998888888887 PP

  == domain 11  score: -3.5 bits;  conditional E-value: 5.8
        HALZ   11 KasYdaLksdydsLkke 27  
                  K ++ +L        +e
  CCD24497.1 1867 KDQFQSLN-------AE 1876
                  55555555.......44 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00066       1.5       2      45 ..     156     202 ..     155     225 .. 0.85
   2 ?   -1.6   0.1       1.1   2.4e+03      82     113 ..    1252    1284 ..    1246    1311 .. 0.85
   3 ?    1.4   0.0      0.13     3e+02      69      92 ..    1547    1570 ..    1521    1626 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00066
                 EEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B CS
       AAA_5   2 vlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrr 45 
                 vl+ G++G gK+e ++++++ l   +++++++ ++ + ++++++++ 
  CCD24497.1 156 VLVTGESGAGKTENTKKILQYLasiTSSTTTISNPTSPNKTNFIQEG 202
                 899******************99999999999999998888888865 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
                  HHHHHHHHHSSEEE..-SSSEEE---....... CS
       AAA_5   82 lnsLlslleerrllleeggelvkakndd.ller 113 
                  +n+L  ++ +  +++e  +el+++k+d+  le+
  CCD24497.1 1252 INKLKEIIKNANIQVELDKELTDVKPDEvNLEK 1284
                  899**********************99876665 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.13
                  EEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5   69 lvlDEveraesevlnsLlslleer 92  
                  ++ DE+er++s++++s+++  + +
  CCD24497.1 1547 YYTDEIERLKSDIAESMNTETSLK 1570
                  578**************9866555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1    0.0032       7.1       1      34 [.     156     186 ..     156     203 .. 0.70
   2 ?    1.6   0.2      0.16   3.5e+02      16      77 ..    1170    1228 ..    1162    1249 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0032
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsv 34 
                   ++++G+sg GK+  +k++ + l++    +++ ++
    CCD24497.1 156 VLVTGESGAGKTENTKKILQYLASI---TSSTTT 186
                   5799*************99988832...222233 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.16
  RNA_helicase   16 keLakallkkl.klkkkdsvys.rnpeddfwdgYtgqevvvidDfgqvkdeenpsdlaelirlv 77  
                    k+L+++l+++   ++ ++ +y    +++++ ++Y++ ++ + d +++ +de     ++e+ +l+
    CCD24497.1 1170 KKLSARLANETlLTNDNNMFYNsEISKEQIISMYNDMKIKLADVMKNLEDE-----IEEKKNLI 1228
                    4555566644337777888898888999999****9999888777776666.....44444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.26      21      49 ..     149     178 ..     139     226 .. 0.79
   2 ?   -4.6   3.0         8   1.8e+04      63      63 ..    1058    1058 ..     899    1182 .. 0.62
   3 ?   -2.7   1.8         3   6.8e+03     116     116 ..    1560    1560 ..    1473    1735 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
      AAA_16  21 sgrp.elvllsGesGvGKsslvrellrale 49 
                 s    ++vl++GesG GK+   +++l++l 
  CCD24497.1 149 SEKQnQSVLVTGESGAGKTENTKKILQYLA 178
                 3333499************99999986544 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 8
      AAA_16   63 l 63  
                  +
  CCD24497.1 1058 S 1058
                  0 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3
      AAA_16  116 a 116 
                  a
  CCD24497.1 1560 A 1560
                  1 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00014       0.3       3      29 ..     151     177 ..     149     206 .. 0.75
   2 ?   -2.5   1.1       2.5   5.5e+03      78      91 ..     947     960 ..     874    1064 .. 0.68
   3 ?   -1.5   0.4       1.3   2.9e+03      75     109 ..    1528    1563 ..    1461    1589 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
      AAA_22   3 ktagilvvtGesGtGKTtllrrlleql 29 
                 k+ ++++vtGesG+GKT   +++l+ l
  CCD24497.1 151 KQNQSVLVTGESGAGKTENTKKILQYL 177
                 578999************999998876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.5
      AAA_22  78 llealeqalrarav 91 
                  l++le+  ++ + 
  CCD24497.1 947 SLKQLEEKYQTLQI 960
                 33444333333322 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.3
      AAA_22   75 seellealeqalraravielliiDEaqhlrs..eeal 109 
                  + + l++l + l ++++      DE+++l s  +e +
  CCD24497.1 1528 LNADLAHLKERLTSTQD-TSYYTDEIERLKSdiAESM 1563
                  22223344444444444.5777888888842344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1890 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3271  (0.182442); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                       184  (0.0102627); expected 17.9 (0.001)
Passed Fwd filter:                        75  (0.00418317); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 3.29u 0.42s 00:00:03.71 Elapsed: 00:00:00.80
# Mc/sec: 7113.02
//
Query:       CCD24498.1  [L=376]
Description: hypothetical protein NDAI_0D01840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-25   90.1   0.9    9.5e-18   64.3   0.3    2.2  2  Ras        Ras family
    1.3e-10   41.5   0.1      9e-05   22.7   0.0    2.4  2  Roc        Ras of Complex, Roc, domain of DAPkinase
     0.0024   17.3   0.2      0.015   14.6   0.2    2.1  2  Gtr1_RagA  Gtr1/RagA G protein conserved region


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     3e-09   1.8e-05       2      44 ..      25      67 ..      24      82 .. 0.89
   2 !   64.3   0.3   1.6e-21   9.5e-18      39     160 ..     166     295 ..     132     297 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 3e-09
                EEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET CS
         Ras  2 lvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd 44
                + ++Gd+++GKtsl++r+ ++ F++  + T  +d y k+++++
  CCD24498.1 25 ITVMGDNHCGKTSLIFRWLTNAFQQIEDGTYQEDIYHKTLNIE 67
                789***********************************99987 PP

  == domain 2  score: 64.3 bits;  conditional E-value: 1.6e-21
                 EEEEETTEEEEEEEEEETTSG..GGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST..TTSEEEEEEETTTGGGG-SS-HHHHHHHHHH CS
         Ras  39 keievdgkevkleiwDTAGqe..efkslrelyyrdaegillvyditsresfenvkkwveeikrvae..envpivLvGnKvDleekravsteegeelake 133
                 k++  + +++kl+i+D    e  +f++lr++ ++++++++l++d t+resf++++++ ++i+r     +n+pi+L+ +K+D  ++r+vs +e ++l  +
  CCD24498.1 166 KHFLNRPHNIKLQILDSQPLEiaDFSELRSKQIQQSDAFILCFDSTNRESFHDIRTYQRKIERARGidDNIPIILCCTKTDKINERKVSPDEIKDLVYK 264
                 444445799********9887669***************************************9988899*************************9976 PP

                 HT....SEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 134 lg....lkfletSAktnenveeafeellrei 160
                  g    + f+e+S k+ +nv+ ++ + l +i
  CCD24498.1 265 SGldirTDFFEVSSKHGTNVQSLLLTTLVKI 295
                 55222268*************9998877666 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.5e-08     9e-05       1      50 [.      24      72 ..      24      80 .. 0.90
   2 !   16.5   0.1   1.2e-06    0.0071      41     120 .]     162     247 ..     132     247 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.5e-08
                EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTB CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvend 50
                ++ ++Gd++ GKtsl+ r++++ f++ e+ t++ d+++k++ +i+++ nd
  CCD24498.1 24 RITVMGDNHCGKTSLIFRWLTNAFQQIEDGTYQEDIYHKTL-NIETLLND 72
                58899*********************************997.78876654 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.2e-06
                 CGGSGGCTTBTTTTCEEEEEEEE-SGG..CTTTT-HHHHCTSCEEEEEEE...GHHHHCHHHHHHHHHHHCS...SS-EEEEEE-TTT CS
         Roc  41 vtkikgvendkkvkkvklniWDtaGqe..rfrslhplylreaalailvyd...srssenlkeWlkelkkvag...kspvilvgnkiDl 120
                 +++ k++ n  + +++kl+i D    e  +f++l++  +++++++il++d   ++s+++++++ +++++ +g   ++p+il+++k+D+
  CCD24498.1 162 YQTHKHFLN--RPHNIKLQILDSQPLEiaDFSELRSKQIQQSDAFILCFDstnRESFHDIRTYQRKIERARGiddNIPIILCCTKTDK 247
                 222333323..3457899999998876336889*****************543335678889999999876543388*********95 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.081   4.8e+02       2      15 ..      25      38 ..      24      47 .. 0.86
   2 !   14.6   0.2   2.6e-06     0.015      47     128 ..     174     252 ..     144     282 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.081
   Gtr1_RagA  2 vLLmGksgsGKtsm 15
                +  mG ++ GKts+
  CCD24498.1 25 ITVMGDNHCGKTSL 38
                568*********97 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 2.6e-06
   Gtr1_RagA  47 nltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletlkeilealrqyspeakvfvlihKmDliqede 128
                 n++l+++D   q   ++  +s+ +++  ++ ++ i  fD+++re  +d++t+++ +e++r ++ ++ +     K+D+i+e++
  CCD24498.1 174 NIKLQILDS--QPLEIA-DFSELRSKQIQQSDAFILCFDSTNRESFHDIRTYQRKIERARGIDDNIPIILCCTKTDKINERK 252
                 555555553..222233.35666777778889**********************************************7654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1336  (0.0745161); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2874.79
//
Query:       CCD24499.1  [L=82]
Description: hypothetical protein NDAI_0D01850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-30  103.7   2.8      4e-30  103.3   2.8    1.2  1  Ribosomal_S27e  Ribosomal protein S27
      0.005   17.0   0.9     0.0059   16.8   0.9    1.2  1  IBR             IBR domain, a half RING-finger domain
  ------ inclusion threshold ------
      0.024   14.2   4.2      0.035   13.6   4.2    1.3  1  TF_Zn_Ribbon    TFIIB zinc-binding
        3.2    7.9   6.4         19    5.4   0.2    2.3  2  zf-ACC          Acetyl-coA carboxylase zinc finger domain


Domain annotation for each model (and alignments):
>> Ribosomal_S27e  Ribosomal protein S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.3   2.8   8.9e-34     4e-30       1      55 []      28      82 .]      28      82 .] 0.99

  Alignments for each domain:
  == domain 1  score: 103.3 bits;  conditional E-value: 8.9e-34
                    -S--EEEEE-TTTS-EEEEESS-SS-EEESSSTCEEEEECSSSEEESSCEEEEES CS
  Ribosomal_S27e  1 prskFldvkCpdCenetvvFshaatvvkCisCgkvLvePtGGkaklkaqilerlk 55
                    prs+FldvkCp+C n+t+vFsha+t+v+C+sC++vL++PtGGkakl++++++r+k
      CCD24499.1 28 PRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTVLCTPTGGKAKLSEGTSFRRK 82
                    89***************************************************97 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.9   1.3e-06    0.0059       7      50 ..      20      65 ..      14      72 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.3e-06
         IBR  7 klkkslesdpn...lkwCprpdCeaiiekseg.cksvtCskCgfefCf 50
                klk+ ++s ++    ++Cp  +C +i    ++ ++ vtC++C++  C+
  CCD24499.1 20 KLKTLVQSPRSyflDVKCP--GCLNITTVFSHaQTAVTCESCSTVLCT 65
                55555555444444489**..*****98888867779**********6 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.2   7.9e-06     0.035       2      29 ..      36      63 ..      35      65 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.9e-06
                  EETTTTCEECHEETSTTCEEESSSSBEE CS
  TF_Zn_Ribbon  2 kCPnCgstnlveDpergelvCtdCGlVl 29
                  kCP C + ++v+ ++++ ++C++C +Vl
    CCD24499.1 36 KCPGCLNITTVFSHAQTAVTCESCSTVL 63
                  9******889**************8876 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2    0.0042        19       2       9 ..      35      42 ..      35      44 .. 0.79
   2 ?    5.0   1.5     0.006        27       3      11 ..      55      63 ..      54      65 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0042
      zf-ACC  2 tKCpsCge 9 
                +KCp+C +
  CCD24499.1 35 VKCPGCLN 42
                7*****55 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.006
      zf-ACC  3 KCpsCgeml 11
                 C+sC+++l
  CCD24499.1 55 TCESCSTVL 63
                7*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 653.35
//
Query:       CCD24500.1  [L=514]
Description: hypothetical protein NDAI_0D01860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.7e-54  181.4   0.0      2e-53  180.3   0.0    1.5  1  NIF            NLI interacting factor-like phosphatase


Domain annotation for each model (and alignments):
>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.3   0.0   1.1e-57     2e-53       1     152 [.     344     501 ..     344     506 .. 0.93

  Alignments for each domain:
  == domain 1  score: 180.3 bits;  conditional E-value: 1.1e-57
         NIF   1 ktLVLDLDetLvhskleks.k...klkve..gekvevsvlkRpgldefLkelsklyevvifTasseeyaeavidildpekkllshrlyrescvkkkgey 93 
                 k+LVLDLDetLvhs+++   +   +l+v+  ++ ++v+v+kRpg+defL+++ kl+evvifTas ++y ++ +d ldp++k+++hrl+re+c  ++g+y
  CCD24500.1 344 KCLVLDLDETLVHSSFKYLpNadfNLPVNidDQIHNVYVIKRPGVDEFLEKVGKLFEVVIFTASVSRYGDPLLDRLDPKGKSIHHRLFREACYNYEGNY 442
                 79*************9555447775555566999**********************************************************766**** PP

         NIF  94 vKdLsllgrdlsrvvivDdspdsfelqpengipiksffsdkkDneLlkllpllkelakv 152
                 +K+Ls +gr+ls+++i+D+sp s+ ++p+++ipi+s+fsd++DneLl+++pll++l+k 
  CCD24500.1 443 IKNLSQMGRPLSEIIILDNSPASYIFHPQHAIPISSWFSDSHDNELLDIIPLLEDLSKN 501
                 *******************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3473  (0.193709); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                       147  (0.00819901); expected 17.9 (0.001)
Passed Fwd filter:                        63  (0.00351386); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.43u 0.36s 00:00:01.79 Elapsed: 00:00:00.55
# Mc/sec: 2800.13
//
Query:       CCD24501.1  [L=506]
Description: hypothetical protein NDAI_0D01870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-16   59.3   0.1    4.3e-16   58.2   0.1    1.6  1  Abhydro_lipase   Partial alpha/beta-hydrolase lipase region
    2.3e-05   23.8   0.0    0.00024   20.5   0.0    2.4  3  Hydrolase_4      Serine aminopeptidase, S33
    5.8e-05   22.9   1.2    0.00011   22.0   0.0    2.0  3  Abhydrolase_1    alpha/beta hydrolase fold
      0.006   15.8   1.4     0.0065   15.7   0.4    1.4  2  Phyto_Pns9_10    Phytoreovirus nonstructural protein Pns9/Pns
  ------ inclusion threshold ------
      0.012   15.2   0.1      0.028   13.9   0.0    1.6  2  DUF900           Alpha/beta hydrolase of unknown function (DU
      0.037   12.9   0.0       0.11   11.4   0.0    1.7  2  Chlorophyllase2  Chlorophyllase enzyme
      0.077   12.5   0.0       0.29   10.6   0.0    1.9  1  Lipase_2         Lipase (class 2)


Domain annotation for each model (and alignments):
>> Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.1   1.7e-19   4.3e-16       3      64 .]     102     164 ..     100     164 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.2 bits;  conditional E-value: 1.7e-19
  Abhydro_lipase   3 eiirkhGypveeheVqTeDGYiLtlhRipaknk.svssklekkpvVlLqHGLlasSevwvlng 64 
                     ++++++G+++ee++++T+DG+i++l++++ k + +++++ +++ +Vl+ HGLl+sS+++ +ng
      CCD24501.1 102 HYYNQYGIEIEEFQLETKDGFIIDLWHLKSKTNfQCQNNIGQNSPVLMIHGLLQSSGSFASNG 164
                     7999****************************9777778888899**************9985 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.35     9e+02     118     179 ..       8      96 ..       1     107 [. 0.75
   2 !   20.5   0.0   9.3e-08   0.00024       7     127 ..     147     290 ..     143     299 .. 0.83
   3 ?   -1.0   0.0      0.33   8.3e+02     192     223 ..     402     435 ..     384     445 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.35
  Hydrolase_4 118 kappllklllkllgkllpklqv...........................snnlkadslsrdpevvaayeadplvhgkitvrlllellda 179
                  +++ ++k  ++++++l+ +l++                           ++n+++ds s+ +e+   +++++ v+++  ++ + e l++
   CCD24501.1   8 PIKLFKKTSRRIVSSLILNLSLslifivalykiyfieyynsmspfgkfiTKNVDKDSSSSARENNNTTKQKKNVIRNNNNNKFKEDLNL 96 
                  46677777777777777777777777888888888888888888888888999999999999999999999999777777766666655 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 9.3e-08
  Hydrolase_4   7 vvlvHGlaehsgrya.....elaeaLaaqGfavyalDhr.GhGrse.........gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGli 89 
                  v+++HGl ++sg +a      la+++ + Gf+v+  ++r G+  ++          kr++++  + +  Dl  ++++v +  + ++l +++hS G + 
   CCD24501.1 147 VLMIHGLLQSSGSFAsngqnSLAYYMFNSGFDVWLGNNRcGF--TPnwnpklipkKKRWDWDINEMVNYDLPMLIDHVLKVTNFEKLSIVCHSQGTTQ 242
                  899*********9963333359************99998455..55559*****99*****************************************9 PP

  Hydrolase_4  90 allyllrypd..........kvaglilsaPalkikaklkappllklll 127
                  ++l ll+ +           k++ +i  aPal + + l+ +p+ kl++
   CCD24501.1 243 VFLNLLQDKGkdkncapmidKIENVIALAPALYPGPILNDHPIFKLMS 290
                  998884443336778889999999999999999998877667766655 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.33
  Hydrolase_4 192 lP.llllhGeaDkvvdpeasrelyerlgsk.dkt 223
                  +P +l+++ ++Dk+vd +   + +++   +   +
   CCD24501.1 402 IPnFLIFIPGQDKLVDGQRVIKHFRNFENEaSYK 435
                  555899999*******999988888777653444 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       2.5   6.5e+03     142     183 ..      65      91 ..      55     109 .. 0.45
   2 !   22.0   0.0   4.1e-08   0.00011       2      94 ..     146     250 ..     145     295 .. 0.79
   3 ?   -1.8   0.0      0.75   1.9e+03     193     233 ..     384     425 ..     361     441 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.5
                    HHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHHH CS
  Abhydrolase_1 142 plladelaaleqrhrlvdalkfpdkskrfpssgsdnasslat 183
                     ++a+e++ ++ + ++v ++++               +++  
     CCD24501.1  65 SSSARENNNTTKQKKNVIRNNN---------------NNKFK 91 
                    3334444444444444444333...............33333 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 4.1e-08
                    EEEEE-STTTCGGGGTTGHHHHHHHHT....TSEEEEEEET.TSTTSSSTTTGB...........CHHSHHHHHHHHHHHHHHCTTSSEEEEEETH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd....gfdvillDlr.GvgySspapacin..........ddygtasvaddldrildalgddkltlvGhSm 82 
                    +++++hGl+ ss+++a +g  +         gfdv+l + r G+     ++              +++ + ++   +d +l  ++ +kl +v hS+
     CCD24501.1 146 PVLMIHGLLQSSGSFASNGQNSLAY-YmfnsGFDVWLGNNRcGFTPNWNPKL--IpkkkrwdwdiNEMVNYDLPMLIDHVLKVTNFEKLSIVCHSQ 238
                    89************99865442222.24556*********944544444444..15699999999999999999999999**************** PP

                    HHHHHHHHHHHH CS
  Abhydrolase_1  83 GGmialayaaey 94 
                    G+++++  +++ 
     CCD24501.1 239 GTTQVFLNLLQD 250
                    ****99866665 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.75
                    HHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCH.HHHHHH CS
  Abhydrolase_1 193 pttdsaklllrlrelknvlaptlvisgtsDplvpp.kaledl 233
                    +++ ++++l++++  ++++ + l+++  +D+lv+  +++  +
     CCD24501.1 384 QYKKWFSKLGDDDTKQKIIPNFLIFIPGQDKLVDGqRVIKHF 425
                    444455555555555666668888888999998865555555 PP

>> Phyto_Pns9_10  Phytoreovirus nonstructural protein Pns9/Pns10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.4   2.5e-06    0.0065     164     252 ..      42     140 ..      29     164 .. 0.75
   2 ?   -3.7   0.0         2     5e+03     163     190 ..     374     402 ..     368     444 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.5e-06
  Phyto_Pns9_10 164 lkeyytaleeveaylekl..pddskdslln.qkskevlrvifsnakvliatkinky..vtlyedsy....leyvreva.eyvadlwdvqtttntqg 249
                    + eyy ++     +++k    d+s  +  n + +k++  vi +n +++  + +n+y  ++ y + y     e+  e+   ++ dlw++++ tn q 
     CCD24501.1  42 FIEYYNSMSPFGKFITKNvdKDSSSSARENnNTTKQKKNVIRNNNNNKFKEDLNLYptLNHYYNQYgieiEEFQLETKdGFIIDLWHLKSKTNFQC 137
                    3589************985444444444443778888999999**********9994445566766222234444555679*************99 PP

  Phyto_Pns9_10 250 hen 252
                    ++n
     CCD24501.1 138 QNN 140
                    887 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2
  Phyto_Pns9_10 163 ilkeyytaleeveaylekl.pddskdsll 190
                    ++k+y     + + ++ kl  dd+k+ ++
     CCD24501.1 374 FIKNYNDFFPQYKKWFSKLgDDDTKQKII 402
                    77888888888888888886566666665 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.6   4.1e+03      61      79 ..      53      71 ..      52      87 .. 0.80
   2 ?   13.9   0.0   1.1e-05     0.028      78     136 ..     213     272 ..     200     274 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.6
      DUF900 61 gklldynyDresaeasrda 79
                gk++ +n+D++s++ +r++
  CCD24501.1 53 GKFITKNVDKDSSSSAREN 71
                6788999999998887764 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.1e-05
      DUF900  78 dalekllrylatkksakkihllaHSmGtwlv.lealrqlaieadepaveakikeviLaAP 136
                  +l  l+  + + ++ +k+++++HS Gt  v l+ l+   + ++   +  ki++vi +AP
  CCD24501.1 213 YDLPMLIDHVLKVTNFEKLSIVCHSQGTTQVfLNLLQDKGKDKNCAPMIDKIENVIALAP 272
                 57788999999999*************86650555555555555466888******9999 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.3e-05      0.11      86     126 ..     225     272 ..     197     300 .. 0.66
   2 ?   -2.1   0.0      0.56   1.4e+03     194     208 ..     437     451 ..     422     478 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.3e-05
  Chlorophyllase2  86 epdlsklalsgHSrGgktafalalgkaktsl.......kfsaligvdP 126
                      + +++kl++++HS+G+  +f   l+ +  +        k++ +i++ P
       CCD24501.1 225 VTNFEKLSIVCHSQGTTQVFLNLLQDKGKDKncapmidKIENVIALAP 272
                      479************999987666665533323444555555555555 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.56
  Chlorophyllase2 194 lvvkdyGHldmlddd 208
                        +++y H+d+l  +
       CCD24501.1 437 WYIEEYSHVDILWAN 451
                      35789*****99655 PP

>> Lipase_2  Lipase (class 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00012      0.29       2     103 ..     145     257 ..     144     274 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00012
    Lipase_2   2 ePviivhGns...dlaaeklskliqkfl.ekgy.....teaelYattygdteestslerlekCeyvk..qlRklilaVlkyTgakkvdivahsmGvpia 89 
                 +Pv ++hG     + +a++ ++++++++ + g+     ++   ++ +++ +   ++ ++  + +++    l  li  Vlk T+ +k +iv hs+G +  
  CCD24501.1 145 SPVLMIHGLLqssGSFASNGQNSLAYYMfNSGFdvwlgNNRCGFTPNWNPKLIPKKKRWDWDINEMVnyDLPMLIDHVLKVTNFEKLSIVCHSQGTTQV 243
                 7888999877556555666666666655366762222224455888888887766666666555554124778999*******************9866 PP

    Lipase_2  90 RkailGgkcvdtne 103
                     l  k++d+n+
  CCD24501.1 244 FLNLLQDKGKDKNC 257
                 55555566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1201  (0.0669864); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 3728.25
//
Query:       CCD24502.1  [L=1047]
Description: hypothetical protein NDAI_0D01880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-53  175.9  19.1    5.5e-07   28.9   0.1    8.6  8  PUF            Pumilio-family RNA binding repeat


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.2e-08   0.00022       2      35 .]     702     735 ..     701     735 .. 0.94
   2 !   24.6   0.0   7.5e-10   1.3e-05       4      33 ..     740     769 ..     737     771 .. 0.82
   3 !   22.6   0.0     3e-09   5.5e-05       2      32 ..     774     804 ..     773     807 .. 0.89
   4 !   18.4   0.0   6.8e-08    0.0012      10      27 ..     818     835 ..     817     840 .. 0.89
   5 !   28.9   0.1   3.1e-11   5.5e-07       1      33 [.     845     876 ..     845     878 .. 0.83
   6 !   27.8   0.2   7.2e-11   1.3e-06       1      28 [.     881     908 ..     881     915 .. 0.84
   7 !   19.7   0.1   2.5e-08   0.00046       2      35 .]     929     962 ..     928     962 .. 0.94
   8 !   19.9   0.1   2.2e-08    0.0004       9      34 ..     985    1010 ..     982    1011 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 1.2e-08
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqkklil 35 
                 i g++++ + dqyG++++Q+ l  ++e++k+ i+
  CCD24502.1 702 IFGHILEFCRDQYGSRFIQHELSICSESEKEIIF 735
                 789*************************999886 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 7.5e-10
                 GGHHHHHTSTTHHHHHHHHHHHSCHHHHHH CS
         PUF   4 gnlvqLstdqyGnyvvQkllehateeqkkl 33 
                 ++ + Ls+d +Gnyv+Qk++e  + +q++ 
  CCD24502.1 740 NEALILSNDVFGNYVIQKFFEFGSITQRDI 769
                 555669***************988888875 PP

  == domain 3  score: 22.6 bits;  conditional E-value: 3e-09
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqkk 32 
                 + g+  +Ls   y+++v+Qk le  ++eq+ 
  CCD24502.1 774 FNGKMKELSLQMYACRVIQKALEFIKPEQRL 804
                 568999********************99985 PP

  == domain 4  score: 18.4 bits;  conditional E-value: 6.8e-08
                 HTSTTHHHHHHHHHHHSC CS
         PUF  10 stdqyGnyvvQkllehat 27 
                 ++dq+Gn+v+Qk +e+ +
  CCD24502.1 818 IKDQNGNHVIQKAIEYIP 835
                 68*************865 PP

  == domain 5  score: 28.9 bits;  conditional E-value: 3.1e-11
                 HHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHH CS
         PUF   1 sikgnlvqLstdqyGnyvvQkllehateeqkkl 33 
                 s++g++  Lst+ yG++v+Q+lle  ++   ++
  CCD24502.1 845 SLIGHIYHLSTHSYGCRVIQRLLEF-GSDKDQY 876
                 589*********************5.5555555 PP

  == domain 6  score: 27.8 bits;  conditional E-value: 7.2e-11
                 HHGGGHHHHHTSTTHHHHHHHHHHHSCH CS
         PUF   1 sikgnlvqLstdqyGnyvvQkllehate 28 
                 ++k+++ +L++dqyGnyv+Q++l+ ++ 
  CCD24502.1 881 ELKDFIPYLIQDQYGNYVIQYILQQHED 908
                 589********************86555 PP

  == domain 7  score: 19.7 bits;  conditional E-value: 2.5e-08
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqkklil 35 
                  ++n+v+ s+++++++vv+k + +  e+q+kli+
  CCD24502.1 929 VSKNVVEFSKHKFASNVVEKSIIYGNESQRKLII 962
                 579*******************99*******996 PP

  == domain 8  score: 19.9 bits;  conditional E-value: 2.2e-08
                  HHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF    9 LstdqyGnyvvQkllehateeqkkli 34  
                  ++ dq++nyvvQkl + ++ e+kkli
  CCD24502.1  985 MMRDQFANYVVQKLVTISENEDKKLI 1010
                  799*************9999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1047 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3082  (0.1719); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.33u 0.32s 00:00:01.65 Elapsed: 00:00:00.50
# Mc/sec: 6258.53
//
Query:       CCD24503.1  [L=110]
Description: hypothetical protein NDAI_0D01890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-21   77.2   7.5    1.3e-21   77.0   7.5    1.1  1  Rab5ip    Rab5-interacting protein (Rab5ip)


Domain annotation for each model (and alignments):
>> Rab5ip  Rab5-interacting protein (Rab5ip)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   7.5   7.2e-26   1.3e-21       2      82 .]      26     106 ..      25     106 .. 0.97

  Alignments for each domain:
  == domain 1  score: 77.0 bits;  conditional E-value: 7.2e-26
      Rab5ip   2 lsnlrsltalllGvvaGilgLeslsGflfylllsllvsllfyalkvkgkskkyfrgalkelwteglvnglagFvLtWtlfY 82 
                 l +l++ t l++G++ Gil+Les+ Gf +++l++++v+ lf+++ ++gk++kyf ++++++++e+++++l+gFv++Wt++Y
  CCD24503.1  26 LLFLQDSTTLIFGLCSGILQLESMNGFYMFVLSYVFVCSLFLMWICHGKPAKYFMSPIQDIFLESFFRELMGFVMAWTFSY 106
                 567999*************************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 845.01
//
Query:       CCD24504.1  [L=387]
Description: hypothetical protein NDAI_0D01900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-62  209.9   3.1    7.4e-62  208.4   1.8    2.2  2  DUF383           Domain of unknown function (DUF383)
      1e-20   73.3   0.3    3.8e-20   71.5   0.1    2.2  2  DUF384           Domain of unknown function (DUF384)
  ------ inclusion threshold ------
       0.11   12.7   8.6       0.27   11.5   8.6    1.6  1  DUF4611          Domain of unknown function (DUF4611)
       0.53   10.5   8.7       0.77   10.0   8.7    1.4  1  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3
        1.3    8.3   9.4        1.9    7.7   9.4    1.2  1  NOA36            NOA36 protein
        3.1    6.1   6.1        4.3    5.7   6.1    1.2  1  Cytomega_UL84    Cytomegalovirus UL84 protein
          6    6.5  11.4         12    5.6  11.4    1.4  1  Cwf_Cwc_15       Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> DUF383  Domain of unknown function (DUF383)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.25   6.5e+02       7      22 ..      59      74 ..       3      91 .. 0.61
   2 !  208.4   1.8   2.9e-65   7.4e-62       1     189 [.      95     288 ..      95     289 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.25
      DUF383  7 slladlacmLLsNltk 22
                ++l +  + +L+Nl+ 
  CCD24504.1 59 KILVQQSITILANLSD 74
                3344444444444444 PP

  == domain 2  score: 208.4 bits;  conditional E-value: 2.9e-65
      DUF383   1 kildskslladlacmLLsNltkeesiaaqlle...aklkvsqtpeessksvkalekLldlfvkgatkdlnksanydylayvfanlsqlpegRelllepq 96 
                 ki+d ++++ad++c+LLsNl+k ++i++ +++   ++ +++  +++ +ks++++++L+d+fv g++++lnk an+dyla +fa+ls+++ gR++++++q
  CCD24504.1  95 KICDLENTSADIMCILLSNLAKDDAIKN-VFDiiaTEENIKVLNKDVFKSKRVIDCLMDCFVMGYDRKLNKFANFDYLAFFFADLSRFKIGRNYFVNEQ 192
                 699***********************98.8876654445566667778*************************************************** PP

      DUF383  97 esdkelplqkllpfteh.ksiirRgGvastiKNccFekeahklLlseeevdllpylllpLagp..eeldeedqekLpeelqllpedKeRepdsdir 189
                 e+d+++p++kll+fte+ ++++rR+GvastiKN +F++e+h  Lls+e+++llpy+llp++    +e+deed+ +Lp+elqllpedK+R+p ++i+
  CCD24504.1 193 EYDHVVPISKLLVFTEKyDNKTRREGVASTIKNSLFDSEHHVELLSDENINLLPYILLPITSYkdSEIDEEDMFNLPDELQLLPEDKTRDPINSII 288
                 ***************988*******************************************994455************************99997 PP

>> DUF384  Domain of unknown function (DUF384)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       4.9   1.3e+04      38      51 ..     118     131 ..     117     132 .. 0.80
   2 !   71.5   0.1   1.5e-23   3.8e-20       1      53 [.     294     346 ..     294     348 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.9
      DUF384  38 eaierlVqvLirdE 51 
                 +ai+++ +++  +E
  CCD24504.1 118 DAIKNVFDIIATEE 131
                 68899999988887 PP

  == domain 2  score: 71.5 bits;  conditional E-value: 1.5e-23
      DUF384   1 sLllLcatrhgReyLRskgvYpilRelhkaekdeeveeaierlVqvLirdEse 53 
                 s+llLc+t++ ReyLRsk+vYp++Relhk ++de++ e + r+V+ L+r ++ 
  CCD24504.1 294 SILLLCSTKSSREYLRSKSVYPLVRELHKSVEDEDIGELCYRIVNTLMRGDPA 346
                 89***********************************************9876 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   8.6   0.00011      0.27      38      80 ..     341     383 ..     332     386 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00011
     DUF4611  38 lreevsellstlveqeaqddvaaagdeeeegededdeeeekni 80 
                 +r + +e  +++ +++++d+ ++++d++ e+ededd++++ +i
  CCD24504.1 341 MRGDPAEQVEEILSKDIEDENEDENDKKAEDEDEDDDDDDDEI 383
                 7777788888888888888888888888888888888888776 PP

>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   8.7    0.0003      0.77     168     213 ..     347     380 ..     253     385 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0003
  RNA_pol_3_Rpc31 168 kelleklkelaeeeddeeekkekedeeeee..eeeeddefddddedgg 213
                      ++++e l++            + ede+e+e  ++ ed++ dddd+  +
       CCD24504.1 347 EQVEEILSK------------DIEDENEDEndKKAEDEDEDDDDD--D 380
                      222222222............222222222111222222222222..1 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   9.4   0.00074       1.9     263     302 ..     343     382 ..     300     386 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00074
       NOA36 263 lasgddeddegdedddddddeedddeeeddedeeeeeeee 302
                    +++ ++  ++d +d++++e+d++ ed++++++++++e
  CCD24504.1 343 GDPAEQVEEILSKDIEDENEDENDKKAEDEDEDDDDDDDE 382
                 3333555555666666666655555544444444444433 PP

>> Cytomega_UL84  Cytomegalovirus UL84 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.1    0.0017       4.3     144     183 ..     343     382 ..     331     387 .] 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0017
  Cytomega_UL84 144 tapatsqeeetaashepekkkekeekkeeededdrnddre 183
                      pa   ee  +   e e+  e+++k e+ededd +dd e
     CCD24504.1 343 GDPAEQVEEILSKDIEDENEDENDKKAEDEDEDDDDDDDE 382
                    5677777888888889999999999999999999998876 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  11.4    0.0046        12     113     145 ..     355     382 ..     319     386 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0046
                 --------------------------------- CS
  Cwf_Cwc_15 113 addedseeeeeeeeeesdddsdsdsdddddede 145
                 +d ed+     +e+e++++ +d+d+ddddd+de
  CCD24504.1 355 KDIEDE-----NEDENDKKAEDEDEDDDDDDDE 382
                 222222.....2222233333344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1164  (0.0649228); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 2802.17
//
Query:       CCD24505.1  [L=775]
Description: hypothetical protein NDAI_0D01910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-05   23.2  43.6    2.3e-05   23.2  43.6    3.3  2  TFIIF_alpha  Transcription initiation factor IIF, alpha subun
  ------ inclusion threshold ------
       0.29   11.8   3.1       0.56   10.8   1.1    2.5  2  ATP-cone     ATP cone domain
        1.9    8.8   5.4        1.2    9.4   0.2    3.0  3  Phage_TAC_4  Phage tail assembly chaperone


Domain annotation for each model (and alignments):
>> TFIIF_alpha  Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   1.8      0.52   3.1e+03     422     422 ..     223     223 ..     156     293 .. 0.48
   2 !   23.2  43.6   3.8e-09   2.3e-05      70     442 ..     331     713 ..     321     762 .. 0.50

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.52
                  X CS
  TFIIF_alpha 422 s 422
                  s
   CCD24505.1 223 S 223
                  2 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 3.8e-09
                  XXXXXXXGGGCCSXXEEEEEEEXXCTT.SXEEEEESSTTS..EEEEEEEXSSSSSSEEEEEEEEETTSEEEEEEEEEEEEEEEGGCSTXXSSTTTHHH CS
  TFIIF_alpha  70 sefnralREearrkkyGiiskkyrldd.qPWiLevggkeggqkkfrGireGgvsenasyyvltkapdgafeAypvneWynFnpvaryktLtleeAEee 166
                  s+ +++ R   + k     +kk r ++  PW++e   +  g + + G  e g s   sy +l    dg+f  +p+++ y+F+  ++y tLt+eeAE++
   CCD24505.1 331 SKRGNSRRKTRQLKVLDENAKKLRFEEfYPWVME---DYDGYNTWVGSYEAGNS--DSYVMLSVEDDGSFTMIPADKVYKFTARNKYATLTIEEAEKR 423
                  333344444444455677899***98747*****...5555999********99..6666666667788***************************** PP

                  HHHHXSSSXSHHHHHHXXXXXX.....XXXXXXX.....XXXXXXXXX.......XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIIF_alpha 167 ferRkktlngfslmlkkalkkgeaavgdedeeeek....kkgggGrsk.......dLkik.dkegddeedsdesdkgdededeekkkkKkkkkaknkk 252
                  ++++     +  ++l+k l +   +++  d  + +    +  + G +        ++ +  d+e dd+e+++  d ++++++e++++ K +    n+ 
   CCD24505.1 424 MDKKS---GEVPRWLMKHLDNIGTTTTRYDRTKRRlkavS--NAGDEDeahddnsEIELDyDEEFDDDEEAPIIDGNEQENKESEQRIKREMLQANAM 516
                  *9765...56678999999887665554444444333332..22222222333332222124445555566666655555555555555444445555 PP

                  X....XXXXXXXXXXXXX..XXX.XXXXXXX.....X..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIIF_alpha 253 kldddkkkkrgsdddadey.dsd.dGddegr.....E..ldyisDdsasendpeeredkkseEeeekkeieqdedeeekeeekkeeegklskkkkkak 341
                   l dd+  + +++dd +    +d +G+   +     E    y sDd++ +    e e + +eE+e+k ++e+ ++   + + + ++++k    +  +k
   CCD24505.1 517 GLRDDEIIPDDDEDDLFSKkKIDvEGERIKKalqktElaALYSSDDEEINPYLSESETEIKEEDEKKIKKEEVDKGSLSKKSS-PRKQKSPSANNIPK 613
                  56666666655555544320111123322220111111123444444444444444444444443333322222222222222.22212222222222 PP

                  XXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX..XXXXXXXXXXXXXXXXXXXXXXXX..XXXXXX...XXXXXXX CS
  TFIIF_alpha 342 klkkkkkek.dkkdSddeedsddsDideedsvslvkakKkkekkkeekvdsnes..sagnsrparpspeqkdskskrkaaseeskspvsvpaKklkte 436
                  ++k k k + d     ++++       + + ++   ++K++e+  ee + s  +  ++ n  p   ++ ++++ +  k+ ++e ++p    +Kk+kte
   CCD24505.1 614 QPKLKVKSInDCVVVLQGDKKILKNFPQGEWNPNAPKRKRQEPTPEESTTSEIGvkQEINNNPRLATAPSSPTPTIMKQ-EGENEEPL---SKKVKTE 707
                  2222222220111111222222222222222333333333333333333333221012233333333333333333333.55556666...5666666 PP

                  XXXXXX CS
  TFIIF_alpha 437 napkss 442
                   +  +s
   CCD24505.1 708 FSADNS 713
                  655444 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.7   4.2e+03      17      50 ..     451     485 ..     448     490 .. 0.75
   2 ?   10.8   1.1   9.3e-05      0.56      13      59 ..     540     591 ..     532     593 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.7
                 HHHHHHHHHHHH.-HHHHHHHHHHHHHHHHHHHII CS
    ATP-cone  17 kIkraiekAceg.seeeideiaeeveaevrkrlrd 50 
                 ++kr++++  ++ +e+e+++  +e+e++  ++++d
  CCD24505.1 451 RTKRRLKAVSNAgDEDEAHDDNSEIELDYDEEFDD 485
                 67777777777777788888888998887777665 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 9.3e-05
                 --HHHHHHHHHHHHHH.....-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHH CS
    ATP-cone  13 fdvekIkraiekAceg.....seeeideiaeeveaevrkrlrdgisteeIqd 59 
                 ++ e+Ik+a++k   +     ++eei+++ +e e e++++ +++i+ ee+++
  CCD24505.1 540 VEGERIKKALQKTELAalyssDDEEINPYLSESETEIKEEDEKKIKKEEVDK 591
                 5567888888888555799999***************************986 PP

>> Phage_TAC_4  Phage tail assembly chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00021       1.2       5      59 ..     138     194 ..     134     240 .. 0.83
   2 ?    0.0   0.2      0.17   9.9e+02      35      51 ..     547     575 ..     533     626 .. 0.68
   3 ?   -3.0   0.0       1.5   8.8e+03      47      84 ..     691     728 ..     688     731 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00021
  Phage_TAC_4   5 klvlgqaPtFklpvklprldgekakveftfkam..drkelaeleeereqseakeeek 59 
                  k ++ ++ +F+lp+ l r d  + + ++t   +   +ke+a+  ++++q++ +++++
   CCD24505.1 138 KKKINPNESFHLPIRLHRKDTRNLQFQLTRAEIvqRQKEIADYKKTQQQQQGQQQGN 194
                  66788899********************99888878899***999999988777654 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.17
  Phage_TAC_4  35 kamdrkelaeleeere............q 51 
                  ka++++ela l+++ +            +
   CCD24505.1 547 KALQKTELAALYSSDDeeinpylsesetE 575
                  67799999999999885555554433331 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.5
  Phage_TAC_4  47 eereqseakeeekaaaeedleasidkglaldaelikev 84 
                  ++++++e+  ++k+++e +  +s++  l ++a++i ++
   CCD24505.1 691 KQEGENEEPLSKKVKTEFSADNSTAIPLITEADIIAAI 728
                  56777778888899999999999999999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1649  (0.0919739); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 5274.37
//
Query:       CCD24506.1  [L=2077]
Description: hypothetical protein NDAI_0D01920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-16   58.3  14.9    6.2e-16   58.3  14.9    2.3  3  zf-UBR     Putative zinc finger in N-recognin (UBR box)
    3.6e-05   23.5   0.0    0.00012   21.8   0.0    1.9  1  ClpS       ATP-dependent Clp protease adaptor protein ClpS
     0.0007   19.9   1.7     0.0007   19.9   1.7    3.0  3  zf-RING_2  Ring finger domain
     0.0029   17.4   1.5      0.014   15.3   1.5    2.2  1  zf-C3HC4   Zinc finger, C3HC4 type (RING finger)
     0.0058   16.9   0.5     0.0058   16.9   0.5    2.0  2  zf-rbx1    RING-H2 zinc finger domain


Domain annotation for each model (and alignments):
>> zf-UBR  Putative zinc finger in N-recognin (UBR box)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3  14.9   1.7e-19   6.2e-16       1      68 [.     198     266 ..     198     268 .. 0.88
   2 ?   -4.7   2.0         5   1.8e+04       9      25 ..    1386    1405 ..    1369    1421 .. 0.59
   3 ?   -3.7   0.2       3.9   1.4e+04      15      36 ..    1788    1796 ..    1781    1814 .. 0.52

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 1.7e-19
      zf-UBR   1 kCtkvfkkgevvyrCltCsldetsviCeeCfkaskHeghelvelstkrng..gvCdCGdeeawkeegfCk 68 
                 +C+k+fk ge++yrC++C+ d+t+v+C +Cf+  +He+h++ ++ ++++   g+CdCGd eaw+++ +Ck
  CCD24506.1 198 NCGKKFKVGEPLYRCKECGYDDTCVLCINCFNPDEHENHHV-YTDICHDFtsGICDCGDAEAWNTTLHCK 266
                 6************************************9998.4444443336************9999*8 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 5
      zf-UBR    9 g...evvyrCltCsldetsv 25  
                  +   + ++ C  C++ ++++
  CCD24506.1 1386 KrfvNNAFICPLCQTFSNCI 1405
                  23445566666666665554 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.9
      zf-UBR   15 CltCsldetsviCeeCfkaskH 36  
                  CltC+ +              H
  CCD24506.1 1788 CLTCGVK------------I-H 1796
                  5555544............3.3 PP

>> ClpS  ATP-dependent Clp protease adaptor protein ClpS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.4e-08   0.00012       3      58 ..     379     433 ..     378     437 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 3.4e-08
                 X--EEEEEES-S-S-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHSEEEEEEE-HHH CS
        ClpS   3 pkqYkvvLlNDdvttmefVvevLqkvfgkskeeAteimlevhreGravvgvgtrei 58 
                 pk Y v+++ND+++++++ +  L++ +  +  +   ++ +v+ eGra+ ++ ++ +
  CCD24506.1 379 PKDYAVIIYNDEFHNYSQATMALRQGVPDNI-HIDLLTSKVDSEGRAMLKCSDKMS 433
                 899**********************999765.568999************998765 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.2   8.2         5   1.8e+04       6      30 ..     199     228 ..     198     260 .. 0.64
   2 ?   -3.0   0.2       2.7   9.5e+03       2      10 ..    1294    1302 ..    1293    1304 .. 0.79
   3 !   19.9   1.7     2e-07    0.0007      15      44 .]    1365    1399 ..    1357    1399 .. 0.85

  Alignments for each domain:
  == domain 1  score: -6.2 bits;  conditional E-value: 5
   zf-RING_2   6 Cleelssadsvlll.pCgH...v.fhreCl 30 
                 C ++++ ++ + ++ +Cg+   +  + +C+
  CCD24506.1 199 CGKKFKVGEPLYRCkECGYddtCvLCINCF 228
                 666677777766554577643332444444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.7
   zf-RING_2    2 eCpICleel 10  
                  +C++C+++ 
  CCD24506.1 1294 TCSLCQDDT 1302
                  699999875 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 2e-07
   zf-RING_2   15 svlllpCgHvfhreClerwlrssst......CPlCr 44  
                  +v +  C+H++h +C++r++++++       CPlC+
  CCD24506.1 1365 KVFVS-CNHHIHNNCFKRYIQKKRFvnnafiCPLCQ 1399
                  45555.*************99998899********5 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.5   3.9e-06     0.014      14      41 .]    1367    1398 ..    1350    1398 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.9e-06
                  E-TTS--B-CHHHHHHHHC....TSSB--TTT CS
    zf-C3HC4   14 lleCkHsfCskCirkilks....rkkvkCPlC 41  
                  +  C+H ++++C ++++++    ++++ CPlC
  CCD24506.1 1367 FVSCNHHIHNNCFKRYIQKkrfvNNAFICPLC 1398
                  678***************9999989999**** PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.5   2.4         5   1.8e+04      13      22 ..     223     232 ..     208     246 .. 0.52
   2 !   16.9   0.5   1.6e-06    0.0058      25      55 .]    1363    1399 ..    1347    1399 .. 0.81

  Alignments for each domain:
  == domain 1  score: -5.5 bits;  conditional E-value: 5
     zf-rbx1  13 acieckapgd 22 
                  ci+c +p++
  CCD24506.1 223 LCINCFNPDE 232
                 3444444433 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.6e-06
     zf-rbx1   25 cpvvlGeCgHaFHlhCiskWlkt....rkv..CPlcr 55  
                    +v+ +C+H+ H +C ++++++    +++  CPlc+
  CCD24506.1 1363 SRKVFVSCNHHIHNNCFKRYIQKkrfvNNAfiCPLCQ 1399
                  567899*****************999844345****6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2077 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1452  (0.0809861); expected 358.6 (0.02)
Passed bias filter:                      587  (0.0327403); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.18u 0.30s 00:00:01.48 Elapsed: 00:00:00.50
# Mc/sec: 12417.38
//
Query:       CCD24507.1  [L=68]
Description: hypothetical protein NDAI_0D01930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-25   88.5   3.0    2.2e-25   88.3   3.0    1.0  1  UCR_UQCRX_QCR9  Ubiquinol-cytochrome C reductase, UQCRX/QCR9 
  ------ inclusion threshold ------
      0.014   15.2   0.2      0.015   15.1   0.2    1.1  1  DUF2976         Protein of unknown function (DUF2976)


Domain annotation for each model (and alignments):
>> UCR_UQCRX_QCR9  Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   3.0   2.5e-29   2.2e-25       2      52 ..       5      55 ..       4      56 .. 0.96

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 2.5e-29
                    HHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHTGG CS
  UCR_UQCRX_QCR9  2 tlYntlfrrnstfvltifagAfvferafDsatdkiWdsiNkGKlWkDIkhk 52
                    ++Y++lf+rns+fv+tif++Af+f+ +fD+ ++++++++NkGKlWkD++++
      CCD24507.1  5 SVYKVLFKRNSVFVGTIFVSAFIFQAVFDTSVTSWYENHNKGKLWKDVQAR 55
                    89**********************************************986 PP

>> DUF2976  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.2   1.6e-06     0.015      26      71 ..      14      59 ..       5      61 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.6e-06
     DUF2976 26 dgvillgLvlaavaflaVakaalkkfneisegkaewgkfgltlvvG 71
                + v ++ + ++a+ f aV  + ++++ e +++ + w ++++ ++ G
  CCD24507.1 14 NSVFVGTIFVSAFIFQAVFDTSVTSWYENHNKGKLWKDVQARIAAG 59
                568899999******************************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 524.00
//
Query:       CCD24508.1  [L=101]
Description: hypothetical protein NDAI_0D01940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-19   69.3   2.9    2.4e-19   68.7   2.9    1.3  1  zf-Tim10_DDP  Tim10/DDP family zinc finger
  ------ inclusion threshold ------
      0.047   13.7   0.1      0.053   13.5   0.1    1.0  1  SYCP2_ARLD    Synaptonemal complex 2 armadillo-repeat-like do


Domain annotation for each model (and alignments):
>> zf-Tim10_DDP  Tim10/DDP family zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   2.9   2.7e-23   2.4e-19       2      62 ..      32      88 ..      31      90 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 2.7e-23
  zf-Tim10_DDP  2 qleqeqqvanaqelvnkltekCfkkCigkypgssLdsseesCldnCvdryldvsnlvskrl 62
                  q++qe++vana+elv+klte+CfkkC         ds+ e+C+d+C  +y++++n vsk++
    CCD24508.1 32 QIAQELAVANATELVSKLTENCFKKCLMA----PYDSKNETCVDQCLTKYMKSWNAVSKAY 88
                  89*************************54....5899999*******************99 PP

>> SYCP2_ARLD  Synaptonemal complex 2 armadillo-repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   5.9e-06     0.053      27     105 ..      16      96 ..       4      99 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.9e-06
  SYCP2_ARLD  27 evsqkyskqllnkLdklinkeLd.knefknvsllL.kciqkflkndgeeglsllikqgLvqkmvswfekakeflileenek 105
                 + ++  s  + n++ + i +eL   n  + vs l  +c +k+l    +++ ++ + q L + m sw   +k++++  ++++
  CCD24508.1  16 NQPKVESSPVANQIKTQIAQELAvANATELVSKLTeNCFKKCLMAPYDSKNETCVDQCLTKYMKSWNAVSKAYVARIQEAS 96 
                 4455556778899*********834667789988658*****************************999999988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1181  (0.0658709); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 807.50
//
Query:       CCD24509.1  [L=352]
Description: hypothetical protein NDAI_0D01950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-84  283.0   0.3    3.4e-84  282.6   0.3    1.1  1  Ribonuc_red_sm  Ribonucleotide reductase, small chain


Domain annotation for each model (and alignments):
>> Ribonuc_red_sm  Ribonucleotide reductase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.6   0.3   1.9e-88   3.4e-84       1     279 []      41     307 ..      41     307 .. 0.98

  Alignments for each domain:
  == domain 1  score: 282.6 bits;  conditional E-value: 1.9e-88
                     TT-TTS-SSHHHHHHHHHHHCT---GGGS-GHHHHHHHHSTS-HHHHHHHHHHHHHHHHHHHHHHHCHHHCHHCCBSSHHHHHHHHHHHHHHHHH CS
  Ribonuc_red_sm   1 rfvlfpikypeiwelykkleanfWtpeevdlskDlkdwkekLsedekefikkvlaflalldtivnenlverllsevqipearafygfqaamEniH 95 
                     rfv+fpiky+eiw++ykk+ea+fWt+ee++l+kD+kd++ kL++d+kefi +vla l++++ i+n+ lve+++ e+q+pe ++ ygfq++mEni+
      CCD24509.1  41 RFVMFPIKYHEIWAAYKKVEAAFWTAEEIELEKDVKDFS-KLNDDQKEFIARVLAYLTVSEDIINKHLVEKFSAELQNPEGKSLYGFQIMMENIY 134
                     79************************************9.6****************************************************** PP

                     HHHHHHHHHHHT.-HHHHHHHHCHHHH-HHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSSHHHHHHHHHHHHH CS
  Ribonuc_red_sm  96 aesYsllletlvkdekekdelfnaieenpalqkkaewikkwyeskkdeekfaerlvafallegilfysgFaailwlkkrgllpglaeiielilrD 190
                      e+Ys+++++l  +  e   +f+++ +  + q+ka++i++w+++ ++   + erlva+++ egi+f++ +aa+ wl +   +pg+++++++i+rD
      CCD24509.1 135 DEVYSMIVDALY-NGPENVPYFKQVPSTVQHQEKAAFIQRWIHNPDS--LYGERLVALSAKEGIFFSGVYAALGWLGNTAGFPGISTANKFICRD 226
                     ************.77778*************************8884..589******************************************* PP

                     HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.BTTCHHHHHHHHHHHHHHHHHHCTT---SS-TT---C CS
  Ribonuc_red_sm 191 eglHtdfagllfkelkeenelenkeleeeveelikeavelEkefitdalpvellglnkedvkqYieyvadrllmnlgyeklYnveeenP 279
                     +g ++df++llf +l  +    +k+  + ve++i+eav++E + +++a++ve +g++ +++kqY++++ad ll ++g +k+Ynv  +nP
      CCD24509.1 227 KGAYADFGCLLFAHL--K----TKPDAKIVEKIITEAVDIELDVMNKAFEVEKFGVDPALIKQYVQFIADSLLSSFGNDKVYNV--TNP 307
                     ***************..6....67************************************************************..998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2739.82
//
Query:       CCD24510.1  [L=481]
Description: hypothetical protein NDAI_0D01960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
        3.6    7.1   7.4        6.6    6.2   7.4    1.4  1  Exonuc_VII_L  Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   7.4   0.00037       6.6     150     263 ..     342     461 ..     302     477 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00037
  Exonuc_VII_L 150 eelerrlekaikrlleekkqrle..klasrl..............kspeellerkrqrldeleerleralkkqlkkkrerleelkerlkekleekke 230
                   +++++  ek +   l++ kqrl+  ++  rl              k  +e++++++++l++++ +l++        +++ l+e k+ ++  +++++e
    CCD24510.1 342 KKIHKMKEKLMGDILQKVKQRLRlsAFPVRLngedldseyifakrKYIKERYNTEAESLKKFKLELKQ--------AQKLLSERKALIE--TKRQNE 428
                   33333333333333333333333113333332211111111111111233333333333333333333........2222222221111..222233 PP

  Exonuc_VII_L 231 rlkklkerlelleekkerleeleeklealsplk 263
                   + +k ++r++++ee++++l+ + + ++ ++p+k
    CCD24510.1 429 EQEKEEQRTRNIEEERNKLHPILRDIDEYEPKK 461
                   333333444455555555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2175  (0.121312); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3434.47
//
Query:       CCD24511.1  [L=740]
Description: hypothetical protein NDAI_0D01970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-29  100.5   0.3    5.6e-29  100.5   0.3    2.4  2  LsmAD        LsmAD domain
    2.8e-15   56.2   0.3    8.9e-15   54.6   0.3    1.9  1  SM-ATX       Ataxin 2 SM domain
  ------ inclusion threshold ------
      0.016   15.3   0.2      0.037   14.1   0.2    1.6  1  LSM14        Scd6-like Sm domain
       0.16   11.3   0.1       0.33   10.3   0.1    1.6  1  DUF1776      Fungal family of unknown function (DUF1776)
       0.92    9.1   3.3        6.3    6.4   0.0    3.3  3  DUF3452      Domain of unknown function (DUF3452)
        1.6    9.3   9.9       0.37   11.3   0.8    2.9  3  Tox-REase-5  Restriction endonuclease fold toxin 5


Domain annotation for each model (and alignments):
>> LsmAD  LsmAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.5   0.3   1.9e-32   5.6e-29       1      71 []     207     278 ..     207     278 .. 0.98
   2 ?   -2.9   1.0       3.5   1.1e+04      25      57 ..     496     510 ..     487     521 .. 0.39

  Alignments for each domain:
  == domain 1  score: 100.5 bits;  conditional E-value: 1.9e-32
       LsmAD   1 FgvkstYdEnlYTtkldksspeykereaeAeriArEIess.astnahvaeerglkvddsgldEEdkYSaVrR 71 
                 Fgv+ t+dE++YTtk++k++p+y++r +eAeriA+EIes+ a++n+h+ae+rg  +ddsg+dEEd+YS+V+R
  CCD24511.1 207 FGVTNTFDEHFYTTKINKNDPQYRQRLKEAERIAKEIESQgAQGNIHLAEDRGIIIDDSGMDEEDLYSGVDR 278
                 9***************************************8888**********99**************99 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.5
       LsmAD  25 ereaeAeriArEIessastnahvaeerglkvdd 57 
                 e+++e                   ee++ +vd+
  CCD24511.1 496 EKMKEK------------------EEQESTVDT 510
                 222222..................222222233 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.3     3e-18   8.9e-15       1      81 []      30     114 ..      30     114 .. 0.87

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 3e-18
                 XXX-HHHHHTTTTSEEEEEETTS-EEEEEEEEE-T....T--EEEEEEEETTS.............-EEEEEEE-GGGEEEEXXX CS
      SM-ATX   1 ndrllflltslvGkevevtvknGevyeGifstvsl..ekdfsvvLkmarkvkk..anskssspssgeipdtliikakdivdieak 81 
                 n+r+ +l+t++vG++v vtv++G +yeG++ +++l  +++++vvLk +++v++  + + + ++ s+++  tlii+++d++++e k
  CCD24511.1  30 NNRFDYLMTNSVGSNVFVTVSSGITYEGLLVSCNLesQDGVDVVLKFPKVVNSssKVDGDIEKLSNALGSTLIINGSDVAELELK 114
                 68999********************************99**************64333555555566666**********99875 PP

>> LSM14  Scd6-like Sm domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.2   1.2e-05     0.037       3      73 ..      41     114 ..      39     116 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.2e-05
       LSM14   3 IGskislisksdirYeGilceinleds...tiaLqnvrsfGtegrkdneqippskevyeyivFrgsDikdLevl 73 
                 +Gs++ ++  s+i YeG l++ nle++    + L+  +      + d+   + s+ + + ++ +gsD+ +Le+ 
  CCD24511.1  41 VGSNVFVTVSSGITYEGLLVSCNLESQdgvDVVLKFPKVVNSSSKVDGDIEKLSNALGSTLIINGSDVAELELK 114
                 8********************99988733347777766666666544433235666667788999999988875 PP

>> DUF1776  Fungal family of unknown function (DUF1776)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00011      0.33      10      65 ..     465     521 ..     463     547 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
     DUF1776  10 GsptePltRsialDLerrGFiVfvtvesaeeeklvesedred.Irplsvdddpssie 65 
                 Gs +  + ++i  DL rr F  f+ ++++ +ek+ e+e++e  ++ ++ +++++ +e
  CCD24511.1 465 GSKKPTVSSAIKKDLFRRSFNMFIKAKENYDEKMKEKEEQEStVDTTKKTKEDKVME 521
                 5555556678999************************99554377777666444444 PP

>> DUF3452  Domain of unknown function (DUF3452)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0021       6.3       7      59 ..      51     103 ..      47     106 .. 0.91
   2 ?   -1.0   2.5      0.41   1.2e+03      94     112 ..     475     493 ..     352     521 .. 0.46
   3 ?   -1.5   0.1      0.56   1.7e+03      65      90 ..     541     569 ..     535     581 .. 0.51

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0021
     DUF3452   7 ncvsLtrLLrscklsikqFfkklkkwadmanldeelrqeieelernfsvttvi 59 
                 ++++   LL sc+l+ ++ ++ + k+++ +n++ +++ +ie+l +++  t +i
  CCD24511.1  51 SGITYEGLLVSCNLESQDGVDVVLKFPKVVNSSSKVDGDIEKLSNALGSTLII 103
                 5678889*************************************999888776 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.41
     DUF3452  94 sisklfefgWlLFlllkne 112
                   ++lf+ +  +F+ +k++
  CCD24511.1 475 IKKDLFRRSFNMFIKAKEN 493
                 2233333333333333333 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.56
     DUF3452  65 qiFeelFlspa...dkeskrskknsaave 90 
                 + +++lF++++   +k++ + +++ ++++
  CCD24511.1 541 KSYKDLFPDQKtlmQKAQVKMQQRAQMNQ 569
                 45667777777554333323333323233 PP

>> Tox-REase-5  Restriction endonuclease fold toxin 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2     0.037   1.1e+02      41      89 ..     202     252 ..     178     255 .. 0.58
   2 ?   11.3   0.8   0.00012      0.37      28      65 ..     474     515 ..     462     523 .. 0.74
   3 ?   -3.5   0.2       5.1   1.5e+04      61      75 ..     553     567 ..     541     578 .. 0.44

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.037
  Tox-REase-5  41 llEaKagYdqffdkkep..klkksfkgadklleqaerqaravealgppakl 89 
                    EaK g  + fd++    k  k + ++++ l++aer a+ +e++g ++++
   CCD24511.1 202 VNEAKFGVTNTFDEHFYttKINKNDPQYRQRLKEAERIAKEIESQGAQGNI 252
                  345555555555554445566666667777788888888887777776665 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00012
  Tox-REase-5  28 dvdfDGfksaeclllEaKagYdqffdkkep....klkksfkg 65 
                  +++ D f+ + ++++ aK +Yd+ +++ke+    +++++++ 
   CCD24511.1 474 AIKKDLFRRSFNMFIKAKENYDEKMKEKEEqestVDTTKKTK 515
                  6777999*********************99554433333333 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5.1
  Tox-REase-5  61 ksfkgadklleqaer 75 
                   ++k + k+ + a+ 
   CCD24511.1 553 LMQKAQVKMQQRAQM 567
                  233333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1570  (0.0875676); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.66u 0.24s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 5557.43
//
Query:       CCD24512.1  [L=538]
Description: hypothetical protein NDAI_0D01980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     3e-147  491.2   5.2   3.5e-147  491.0   5.2    1.0  1  AATase        Alcohol acetyltransferase
  ------ inclusion threshold ------
      0.069   12.6   0.0       0.13   11.6   0.0    1.4  1  DUF1256       Protein of unknown function (DUF1256)
       0.15   10.7   0.2        5.6    5.5   0.0    2.5  3  Condensation  Condensation domain


Domain annotation for each model (and alignments):
>> AATase  Alcohol acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  491.0   5.2  5.8e-151  3.5e-147       1     499 [.      33     531 ..      33     532 .. 0.96

  Alignments for each domain:
  == domain 1  score: 491.0 bits;  conditional E-value: 5.8e-151
      AATase   1 rlGslEkyfvvrnrqklysnfsvyaelnkevdkeqLalalrslilknpiLaaniipkkfpeheayyssdeyyskPfpkeDyvkviekiklddvvlneqp 99 
                 r+G+lE+yf+ ++rq+ly+nf +y+e+n+ v+ +qL   lr+++ k+piLa++iipk  p+  + y+s++y+++P p +D++++++++kl+d+ +n+q 
  CCD24512.1  33 RMGHLENYFALLQRQELYTNFQIYGEFNEPVSDSQLRESLREILFKHPILAHTIIPKDQPDFRKWYQSEKYLNTPYPLHDFIRILPELKLSDILINKQQ 131
                 8************************************************************************************************99 PP

      AATase 100 e.ysellekileeykdddekvdeelnellselvipvgdpkkPlwrlivlpsaddkkkwkkfvfitdHllfDGisgvnffkdlleelekikqdna..... 192
                 e ys++l  il+e++  ++k+++ l++  s l +p+ dpk+P+wrl+ l         ++f+++++H+++D+isgvn+f+d++e+l+ +++ ++     
  CCD24512.1 132 EeYSDILPGILNEFES-EKKITSSLLSRASCLRVPIYDPKRPNWRLLRLSP-------RQFIYVSNHCCSDAISGVNLFQDIAEHLSSSSTSSSfpred 222
                 88*************9.9*******************************99.......79*******************************99987776 PP

      AATase 193 .lkkdevildyekdveelekLPkpieekvdyrpsllalpklllvsfiasklnfkkseekpltkehsavqksnkshq.iilkispeevkkirakikknvh 289
                   + +++i++y++d +  +kL +pi++k++yrp+  alpk++ + f++s l + +++  p ++ +++ +  +k  q + l++++ee++ ir+kik    
  CCD24512.1 223 dKNDNNTIFNYNSDWKFFNKLYDPITDKIEYRPKVKALPKFACSIFVKSYLSYFNWNGLPTMRVDQPLPLLHKQFQfQLLEFTNEELNTIRDKIKTM-- 319
                 666778*************************************************************9998887773679*****************.. PP

      AATase 290 gkatlTpflqavffvalyklgkl.fkeknsevsidvaipvntRrylpe..deevrdsykYgtvvggseFsylissldieedskeklwelveeyhkrlse 385
                   +t+Tpflqa++f+a+yk+gk+   ++++e+ id+a+p++ Rr+l e  d+ ++++ykYg++vgg ++syliss++i++ +++k+ elv++y++  s+
  CCD24512.1 320 -GCTFTPFLQACWFIAMYKCGKVfNLKSWKEWAIDIAVPSSSRRFLIEedDNSLKEMYKYGSNVGGFHYSYLISSFNIDRSENDKFFELVQYYQDGYSK 417
                 .*******************99725689******************75226779********************************************* PP

      AATase 386 slsngkelkglgtlildlllkyvnidkllkkkilktkrstaevsNlGlfsqeeeskykvkdliFsqaagslknafslnvistnsgGlnlslsvvedlls 484
                 s++ng++l glg ++ d +++ +nidk++k+++l+++r++++ sN+G+f+q+e++ky+v+dl+F+qa+gs+k++f+ln+ stn++Gl +s+ v e +  
  CCD24512.1 418 SYENGDHLIGLGIMMMDGIVQRKNIDKMIKDDYLNQTRAGVLFSNAGFFPQDESKKYHVTDLVFNQAQGSMKFSFGLNIASTNVNGLKISVNVAEGTFD 516
                 *************************************************************************************************** PP

      AATase 485 eqteseefvallekk 499
                 e + + ++++ ++++
  CCD24512.1 517 ETADFAHLCNEFKAN 531
                 *****99*9999876 PP

>> DUF1256  Protein of unknown function (DUF1256)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.2e-05      0.13      54      86 ..      48      80 ..      42      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.2e-05
     DUF1256 54 kkipklnvyGtleepvhalNlkeklkeIkkkyk 86
                +  +++++yG  +epv  + l+e+l+eI  k++
  CCD24512.1 48 ELYTNFQIYGEFNEPVSDSQLRESLREILFKHP 80
                45678***********************99996 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0   0.00093       5.6      19      80 ..      43     104 ..      39     111 .. 0.86
   2 ?    2.3   0.0    0.0087        52     228     266 ..     297     338 ..     280     341 .. 0.83
   3 ?   -3.5   0.1      0.52   3.1e+03     385     417 ..     484     517 ..     395     525 .. 0.56

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.00093
                   HHSSSSSTTEEEEEEEEES---HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT--- CS
  Condensation  19 kleeessaynmqavlklegeldlerlekalqelierhdaLRtvfleeengepvQvileerev 80 
                    l++++   n q++ ++++ +  + l+++l+e++ +h++L ++++ +++ +++ ++++e+ +
    CCD24512.1  43 LLQRQELYTNFQIYGEFNEPVSDSQLRESLREILFKHPILAHTIIPKDQPDFRKWYQSEKYL 104
                   55555556699********************************9999999999999988766 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.0087
                   EEEEE...EE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHH CS
  Condensation 228 lsikl...deeteeklrklakeqgvtlndvllaalgllLsky 266
                   ++++l    +e  +++r+  k  g t +  l+a++ ++++k 
    CCD24512.1 297 FQFQLlefTNEELNTIRDKIKTMGCTFTPFLQACWFIAMYKC 338
                   4555544488899999999********************986 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.52
                   E.....SSEEEEEEE.TTSSEEEEEEEETTTS-H CS
  Condensation 385 aeeeskydlslease.tngkltikieYntslFde 417
                   a+   k+ + l++   + ++l+i+++ ++  Fde
    CCD24512.1 484 AQGSMKFSFGLNIAStNVNGLKISVNVAEGTFDE 517
                   2333344444443332356677777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3935.63
//
Query:       CCD24513.1  [L=492]
Description: hypothetical protein NDAI_0D01990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.5e-118  392.5   0.0   9.7e-118  392.2   0.0    1.1  1  SE               Squalene epoxidase
    2.8e-14   53.1   0.0    4.3e-14   52.5   0.0    1.2  1  FAD_binding_3    FAD binding domain
      2e-07   31.0   0.1    4.4e-05   23.2   0.1    2.2  2  DAO              FAD dependent oxidoreductase
     0.0004   20.9   0.8     0.0011   19.5   0.1    2.1  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
    0.00092   19.4   0.1     0.0021   18.2   0.1    1.6  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
     0.0016   17.8   0.5     0.0066   15.7   0.1    2.1  3  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
     0.0053   15.9   1.6     0.0088   15.2   0.7    1.7  2  FAD_binding_2    FAD binding domain
     0.0053   16.8   0.0     0.0094   16.0   0.0    1.3  1  Shikimate_DH     Shikimate / quinate 5-dehydrogenase
     0.0074   15.7   0.6      0.016   14.5   0.6    1.5  1  FAD_oxidored     FAD dependent oxidoreductase
     0.0082   16.1   0.1      0.013   15.4   0.1    1.3  1  3HCDH_N          3-hydroxyacyl-CoA dehydrogenase, NAD binding
  ------ inclusion threshold ------
      0.024   13.9   0.0      0.043   13.0   0.0    1.4  1  Thi4             Thi4 family
      0.025   14.3   0.6       0.08   12.6   0.6    1.9  1  DUF1331          Protein of unknown function (DUF1331)
      0.051   13.2   0.0      0.093   12.4   0.0    1.4  1  ApbA             Ketopantoate reductase PanE/ApbA
       0.13   11.8   0.4       0.47   10.0   0.1    1.9  2  UDPG_MGDP_dh_N   UDP-glucose/GDP-mannose dehydrogenase family
       0.14   12.4   0.1       0.29   11.4   0.1    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma


Domain annotation for each model (and alignments):
>> SE  Squalene epoxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.2   0.0  8.1e-121  9.7e-118       1     276 []     197     469 ..     197     469 .. 0.99

  Alignments for each domain:
  == domain 1  score: 392.2 bits;  conditional E-value: 8.1e-121
          SE   1 kAkltvvcDGifsklRkels.dnkvevtssfvGlvlknaelpkknkghvilgk.pspvllYqisstetRilveikskklPsiangelkeylkeevaPql 97 
                 kA+lt+vcDGifs++R+els +++++v ssfvG++l +a+ p +++ghvilg+ ++p+l+Yqis++etRil++++s+klP     ++k+++ ++v+ ++
  CCD24513.1 197 KAHLTFVCDGIFSHFRRELSpEHVPTVGSSFVGMSLFDAKTPVPMHGHVILGTkHMPILVYQISPEETRILCAYNSPKLPG----DIKTWMANNVQAYI 291
                 69**************************************************99**************************9....9************* PP

          SE  98 PkelrksfkkaleegklrsmpnkflpasknekkGlillGDalnmRHPltggGmtvalnDivllskllkpledlsdeekvleelksfyvkRkeldavvnv 196
                 P++lr+sf+kal +gk+rsmpn++l+a++n+++Gl+++GDalnmRHPl ggGmtv+lnD+vll++ + ++ d+s++ek+l+el +++++Rk++d+v+nv
  CCD24513.1 292 PESLRPSFDKALAQGKFRSMPNSYLSARQNNVTGLCVIGDALNMRHPLGGGGMTVGLNDVVLLVEKIGDM-DFSQREKILDELLDYHFQRKSYDSVINV 389
                 **********************************************************************.**************************** PP

          SE 197 LsialyslfaadsdelkalrkgCfdYlkrGgecvsgpvallsgllprPllLikhffavalysvylllkerpllglplall 276
                 Lsialyslfaad+++l+ l++gCf+Y++rGg+cv+ pv++l+gl p+P+lL+++ffav +y++yl ++er++lglp all
  CCD24513.1 390 LSIALYSLFAADNNNLRDLQRGCFKYFQRGGDCVKLPVEFLAGLMPNPFLLTRVFFAVVFYTIYLKFEERGFLGLPFALL 469
                 ****************************************************************************9985 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   3.6e-17   4.3e-14       2     320 ..      15     360 ..      14     382 .. 0.74

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 3.6e-17
                    EEEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSSS--EEEHHHHHHHHHTT-HHHHHH.HSEECCCCEEEEEEE................. CS
  FAD_binding_3   2 tdVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlpradglnqrtmellrqlGledrila.egapnelmgealyne................. 79 
                    +d l+VGaG  G   a+ L+++G +v++ve+     +   ++ +++  ++ lr+lG+ ++i + +++p  + + ++++e                 
     CCD24513.1  15 YDALVVGAGVIGPCVATALARKGKKVLIVERDWAMPDRIVGELMQPGGVRALRSLGMIQSINNiDAYPVTGYTVIFNGEkvdipypykadvkpvek 110
                    689****************************99999999**********************98356666777777777799999***999999999 PP

                    ............CCCCCEEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHT.EEETCSEEEECCEECCCCC.CCEEEECCTTEEEEEEEEEEEE- CS
  FAD_binding_3  80 ............lsdtpkaradlelesspervtvypqteleriLvehaeerg.lqvrfktevesleqdeegv.taevrdketgeeetvrakYlvGa 161
                                l+d   +  d+e e + er  ++   ++++ L++  +++  ++  ++  +e l+++ ++v  a+v     g+  +++a  +  +
     CCD24513.1 111 lpdlvkdgndkvLEDKTIHIKDYE-EGERERGVAFVHGRFLNNLRNITAQEKnVTRLQGDVIEILKNEAKEViGAKVNIDGRGKV-DFKAHLTFVC 204
                    888866655554444445555555.888888888888899999988766666344444444554455544442456665555555.9********* PP

                    -GTT-HHHHHHTGG.EEEEEEEEEEEEEEEEEEC-SCCCTTCCEEEEECCTTEE..EEEECCETEEEEEEEEECCE-GGGS.CCCHHHHHHHHHHH CS
  FAD_binding_3 162 DGgrStvrktlgie.fegeetvyeagvldvlfdadlsdiveplvlilsaesrgv..mviPlentlerfyvqvearaekeer.sekfteeevkarlr 253
                    DG  S  r++l  e +++ ++   + v   lfda+++ +++++v+++ ++ +++   + P e       +++ ++ +k     +    ++v a ++
     CCD24513.1 205 DGIFSHFRRELSPEhVPTVGS---SFVGMSLFDAKTPVPMHGHVILGTKHMPILvyQISPEET-----RILCAYNSPKLPGdIKTWMANNVQAYIP 292
                    ************774444433...344444788888878888999999999986655566555.....3455555444444144444555555555 PP

                    HHHTTSSCEE.EEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-STTSHHHHHHHHHHHHHHHHHHH CS
  FAD_binding_3 254 eivgektldv.eieevsawtvaqrvaekyrkgrvflaGDAaHihpPtgGqGlNtaiqDavnLawkLaa 320
                    e+  +++ ++    ++++++++   a++ +   ++++GDA  +  P gG G+ ++++D+v L+ k++ 
     CCD24513.1 293 ESLRPSFDKAlAQGKFRSMPNSYLSARQNNVTGLCVIGDALNMRHPLGGGGMTVGLNDVVLLVEKIGD 360
                    55555555554555677888888999999999********************************9976 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   3.7e-08   4.4e-05       1      29 [.      16      46 ..      16      51 .. 0.94
   2 !    5.9   0.0     0.007       8.4     145     298 ..     146     293 ..      62     347 .. 0.68

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.7e-08
                EEEEECTSHHHHHHHHHHHHTT..EEEEESS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekg 29
                d +++G+G+iG ++A +Lar+g  V+++e++
  CCD24513.1 16 DALVVGAGVIGPCVATALARKGkkVLIVERD 46
                789******************99*******8 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.007
                 HHHHHHHHHHH.HHHTT-EEEESECEEEE.EEEETCEEEEE.EECT.EEE.EEEEEEEE--GGGHHHHHTTCTTTSEEEEEEEEEEEEEECCTHSTGSG CS
         DAO 145 pakltaalara.aealGveilegtevtgl.eeedgkvwgve.rttp.gen.daadavVnaaGawsdllgllkeldlpispvrgqvlvlkplseklvspa 238
                   ++++ l++  a+++ v+ l+g  v ++ ++e + v g + +    g + ++a+   ++ G++s +    +el +  +p+ g+++v   l +      
  CCD24513.1 146 HGRFLNNLRNItAQEKNVTRLQG-DVIEIlKNEAKEVIGAKvNIDGrGKVdFKAHLTFVCDGIFSHFR---RELSPEHVPTVGSSFVGMSLFD------ 234
                 45788888888899999*****9.77775376667777776744444766557688********9755...5555555999999998855555...... PP

                 CSEEEEE........EEETTTTEEEEEETTSEEEEEESSEEETTCSSTSCSHHHHHHHHHHHHHHSGG CS
         DAO 239 ailpvpe........tdddgrgvyvtprkdgrvlvGgtadeesgdddpevdeedidellealrklfPq 298
                 a  pvp+        ++++  ++ + p ++ r+l ++        ++p+ + +   ++ + +++++P+
  CCD24513.1 235 AKTPVPMhghvilgtKHMPILVYQISP-EETRIL-CAY-------NSPKLPGDIKTWMANNVQAYIPE 293
                 333444333444443333333333333.233333.443.......24566667777777777777777 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   9.1e-07    0.0011       2      31 ..      17      46 ..      16      70 .. 0.88
   2 ?   -2.6   0.0       7.1   8.4e+03      51      67 ..     138     154 ..     123     178 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 9.1e-07
                EEEECSSHHHHHHHHHHHHTTSEEEEEESS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgkkVtvvers 31
                ++vvG+G+ig  +A+ala+ gkkV +ver 
  CCD24513.1 17 ALVVGAGVIGPCVATALARKGKKVLIVERD 46
                58*************************996 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.1
                 HHTTEEEECSEEEEEEE CS
   Pyr_redox  51 ekngievllntkveeie 67 
                 +++g+ +++++ +++++
  CCD24513.1 138 RERGVAFVHGRFLNNLR 154
                 56677777776666555 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.8e-06    0.0021       1      29 [.      19      47 ..      19      49 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.8e-06
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSS CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrd 29
                   +vGaG+ G + A +La++g++vl++e+ +
     CCD24513.1 19 VVGAGVIGPCVATALARKGKKVLIVERDW 47
                   8*************************987 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   5.5e-06    0.0066     144     178 ..      16      49 ..       6      70 .. 0.85
   2 ?   -1.3   0.0      0.85     1e+03      76      82 ..     171     177 ..     117     218 .. 0.53
   3 ?   -2.1   0.0       1.5   1.7e+03     135     155 ..     210     230 ..     178     232 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.5e-06
                  EEEEES-SHHHHHHHHHHHHHT-EEEEEESSSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgkevtlveardrll 178
                  +++vvG+G+iG  +A ala+ gk+v +ve+ d+ +
   CCD24513.1  16 DALVVGAGVIGPCVATALARKGKKVLIVER-DWAM 49 
                  579**********************99998.6555 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.85
                  EEEEESC CS
                  xxxxxxx RF
  Pyr_redox_2  76 vkidpgk 82 
                  ++i +++
   CCD24513.1 171 IEILKNE 177
                  2222222 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.5
                  HHCCSS-TSEEEEES-SHHHH CS
                  xxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 135 alklkllpkrivvvGgGyiGv 155
                   ++++l p+++  vG++++G+
   CCD24513.1 210 HFRRELSPEHVPTVGSSFVGM 230
                  466677778888888888887 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.7   7.3e-06    0.0088       1      30 [.      16      45 ..      16      49 .. 0.95
   2 ?   -1.6   0.0       0.9   1.1e+03     166     210 ..     173     215 ..     147     225 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 7.3e-06
                   SEEEE--SHHHHHHHHHHHHTTT-EEEEES CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaaeaGlkvavvek 30
                   D++V+G+G+ G + A+++a++G+kv++ve 
     CCD24513.1 16 DALVVGAGVIGPCVATALARKGKKVLIVER 45
                   89**************************96 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.9
                    EEEECTTEEEEEEEEETTTTCEEEEEESEEEE-----GG...... CS
  FAD_binding_2 166 eLivedgrvtGavvenpesgrevrirakavvlatgGfgrallkel 210
                     L  e ++v Ga v+  ++ ++v ++a+ + +  g f++ + +el
     CCD24513.1 173 ILKNEAKEVIGAKVN-IDGRGKVDFKAHLTFVCDGIFSH-FRREL 215
                    333356699999998.66777788999877777788886.44443 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   7.9e-06    0.0094      13      56 ..      15      57 ..       7      84 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.9e-06
                  -EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHH CS
  Shikimate_DH 13 kkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeel 56
                    +l++GaG ++  va++L++kg k v+++ R+ +  ++++ el
    CCD24513.1 15 YDALVVGAGVIGPCVATALARKGKK-VLIVERDWAMPDRIVGEL 57
                  679*****************99988.******999888888877 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.6   1.4e-05     0.016       1      31 [.      16      46 ..      16      55 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.4e-05
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGakvlLveer 31
                  D +VvG+g+ G + A a ar+G+kvl+ve++
    CCD24513.1 16 DALVVGAGVIGPCVATALARKGKKVLIVERD 46
                  679**************************85 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   1.1e-05     0.013       4      40 ..      19      55 ..      16      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
                EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHH CS
     3HCDH_N  4 viGaGtmGagiaavfasagleVvlvdiseealekale 40
                v+GaG++G  +a+++a++g +V +v+++ +  ++   
  CCD24513.1 19 VVGAGVIGPCVATALARKGKKVLIVERDWAMPDRIVG 55
                9*************************99887776655 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.6e-05     0.043       9      52 ..       6      48 ..       1      56 [. 0.87

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.6e-05
                HHHHHHHTEEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS CS
        Thi4  9 fedllkyaesDvvivGaGssGLtaayylakkpdlkvailersvs 52
                + d ++ +  D ++vGaG  G   a  la+k + kv+i+er  +
  CCD24513.1  6 LIDADNSITYDALVVGAGVIGPCVATALARK-GKKVLIVERDWA 48
                5677888999*********************.********9876 PP

>> DUF1331  Protein of unknown function (DUF1331)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.6   6.7e-05      0.08      10      33 ..     446     469 ..     443     470 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.7e-05
     DUF1331  10 TVVaLTVYPKVRERRvLKmPFFLl 33 
                  VV+ T+Y K  ER  L +PF Ll
  CCD24513.1 446 AVVFYTIYLKFEERGFLGLPFALL 469
                 69*******************998 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   7.8e-05     0.093       2      30 ..      18      46 ..      17      52 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.8e-05
                EEES-SHHHHHHHHHHHHHTHCEEEE-SC CS
        ApbA  2 ailGaGaiGsllaakLakagadvtlilrs 30
                +++GaG iG ++a  La++g +v ++ r+
  CCD24513.1 18 LVVGAGVIGPCVATALARKGKKVLIVERD 46
                69*********************999885 PP

>> UDPG_MGDP_dh_N  UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00039      0.47       5      32 ..      19      46 ..      16      54 .. 0.92
   2 ?   -1.1   0.1      0.98   1.2e+03      32      71 ..     159     197 ..     152     205 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00039
                    EE--STTHHHHHHHHHHCTSEEEEE-S- CS
  UDPG_MGDP_dh_N  5 viGlGYvGlvtaavlaeighevigvDid 32
                    v+G+G +G   a++la++g++v++v  d
      CCD24513.1 19 VVGAGVIGPCVATALARKGKKVLIVERD 46
                    9***********************9876 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.98
                     -HHHHHHHCTTS-SS--TTHHHHHHHHCHTTTEEEES-HH CS
  UDPG_MGDP_dh_N  32 deekvdklnsgkipiyepgLeelvkkavesgrlsfttdve 71 
                     +e+ v  l+ + i+i  ++ +e++ ++v +   +++ d++
      CCD24513.1 159 QEKNVTRLQGDVIEILKNEAKEVIGAKV-NIDGRGKVDFK 197
                     6789999999999999999999999998.45555555554 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00025      0.29       2      41 ..      18      54 ..      17      80 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00025
                     EEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHH CS
  Sacchrp_dh_NADP  2 liiGaGsvGqavaellarhfdvdaeitvadrskekleala 41
                     l++GaG +G +va  lar+++   ++ +++r+ +  ++++
       CCD24513.1 18 LVVGAGVIGPCVATALARKGK---KVLIVERDWAMPDRIV 54
                     89*****************98...59**999988777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3659.55
//
Query:       CCD24514.1  [L=146]
Description: hypothetical protein NDAI_0D02000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-54  183.9   2.3    1.2e-54  183.6   2.3    1.1  1  CBP4      CBP4
    0.00053   19.8   2.8    0.00057   19.7   0.1    2.1  2  DUF4574   Ubiquinol-cytochrome-c reductase complex assembly f
  ------ inclusion threshold ------
      0.084   13.5   0.5      0.084   13.5   0.5    2.2  2  LAMTOR    Late endosomal/lysosomal adaptor and MAPK and MTOR 


Domain annotation for each model (and alignments):
>> CBP4  CBP4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.6   2.3   2.1e-58   1.2e-54       1     129 [.       3     130 ..       3     131 .. 0.97

  Alignments for each domain:
  == domain 1  score: 183.6 bits;  conditional E-value: 2.1e-58
        CBP4   1 kplwvrwlkvllaGgaiigtGvllfkyttPtdeeLikrlsPelrkkyeknrelRqkeqqelvkivketsksddpiWktgpikspfeknadeklkdkekf 99 
                 +plwvrwlkv+++Gg+iigtG+llfkyttP+d++Li++lsP+lr +ye++++lRq+eqqel+k+v++t++s+dpiWktgpi+sp+e+++++  + ++kf
  CCD24514.1   3 RPLWVRWLKVYAVGGVIIGTGLLLFKYTTPSDQQLIDSLSPQLRLQYEQEKKLRQAEQQELMKVVQKTAASNDPIWKTGPIQSPWETKTSSL-SIDDKF 100
                 69************************************************************************************998888.679*** PP

        CBP4 100 ekaeaeekqkeelerakeeleeirkeeeek 129
                 +ka+aee+q++el r+k+el++++ +++ k
  CCD24514.1 101 QKANAEEAQRNELARIKKELNDLQVQSQMK 130
                 ************************998876 PP

>> DUF4574  Ubiquinol-cytochrome-c reductase complex assembly factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   9.5e-08   0.00057       9      80 ..      11      82 ..       6      86 .. 0.84
   2 ?   -0.6   0.3      0.22   1.3e+03      37      60 ..     115     135 ..     106     141 .. 0.51

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 9.5e-08
     DUF4574  9 svvallgaGaGlGsaLfvLvtPgeer.kqeilkempeqdpqrrdeaakkkaLvlatLqeAaatqenvawRknw 80
                 v a+ g+  G G  Lf  +tP++++ ++++  +++ q +q++   + +++ ++++ q+ aa+++++ w+  +
  CCD24514.1 11 KVYAVGGVIIGTGLLLFKYTTPSDQQlIDSLSPQLRLQYEQEKKLRQAEQQELMKVVQKTAASNDPI-WKTGP 82
                566776777789999999*****999457888899999999998888889999**************.98665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.22
     DUF4574  37 eilkempeqdpqrrdeaakkkaLv 60 
                 +i+ke++    ++ + ++k+k++v
  CCD24514.1 115 RIKKELN---DLQVQSQMKTKEIV 135
                 4555554...33333334555554 PP

>> LAMTOR  Late endosomal/lysosomal adaptor and MAPK and MTOR activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.5   1.4e-05     0.084      27      52 ..      47      72 ..      25      73 .. 0.77
   2 ?    1.6   0.4     0.072   4.3e+02      34      52 ..     104     122 ..      83     140 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.4e-05
      LAMTOR 27 qqeqespekltdeqeaLnkIvqetsd 52
                 q+++++  +++eq++L k+vq+t+ 
  CCD24514.1 47 LQYEQEKKLRQAEQQELMKVVQKTAA 72
                456666666789************96 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.072
      LAMTOR  34 ekltdeqeaLnkIvqetsd 52 
                 +++ +++++L +I  e++d
  CCD24514.1 104 NAEEAQRNELARIKKELND 122
                 3444678889988888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2168  (0.120921); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1104.33
//
Query:       CCD24515.1  [L=369]
Description: hypothetical protein NDAI_0D02010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-36  122.5   1.0    1.4e-35  121.5   1.0    1.5  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
    1.3e-21   76.8   0.0    2.7e-21   75.8   0.0    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
    5.8e-20   71.1   0.0    1.2e-19   70.1   0.0    1.5  1  TGS           TGS domain
    2.4e-13   49.9   0.0    4.2e-13   49.1   0.0    1.4  1  FeoB_N        Ferrous iron transport protein B
    0.00011   22.3   0.3      0.053   13.6   0.0    2.4  2  Dynamin_N     Dynamin family
    0.00063   19.1   0.0     0.0011   18.3   0.0    1.4  1  AIG1          AIG1 family
  ------ inclusion threshold ------
      0.012   15.9   0.6       0.11   12.8   0.1    2.5  2  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.013   15.0   0.3      0.098   12.1   0.0    2.2  2  SRPRB         Signal recognition particle receptor beta subun
      0.031   13.9   0.3       0.89    9.1   0.0    2.3  2  Ras           Ras family
      0.041   13.0   0.0        0.1   11.7   0.0    1.6  1  MCM           MCM P-loop domain
      0.049   14.0   0.2       0.11   12.9   0.2    1.6  1  AAA_16        AAA ATPase domain
       0.13   12.6   0.1       0.25   11.7   0.1    1.4  1  DUF1178       Protein of unknown function (DUF1178)
       0.21   11.5   1.7        2.1    8.2   0.0    2.9  3  RsgA_GTPase   RsgA GTPase


Domain annotation for each model (and alignments):
>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   1.0     1e-38   1.4e-35       1     106 []     186     294 ..     186     294 .. 0.94

  Alignments for each domain:
  == domain 1  score: 121.5 bits;  conditional E-value: 1e-38
  MMR_HSR1_Xtn   1 kgGikitstvkltk.ldeetvkkilkeykihnaevlir.edvtvDdlidvieg.nrvYipclyvlNKiDlisleeldelarepnsvviSaekelnld 94 
                   +gG+k+t t + +k l+e+ +k ilk+y+ihna+vl+r +++t+Dd+id++++ +r+Y++clyv+NKiD++slee+d+larepn+vv+S+e+el+++
    CCD24515.1 186 TGGVKVTFTAPPKKyLTEDGIKMILKDYRIHNADVLVRdDQCTIDDFIDILNDqHRNYVKCLYVYNKIDAVSLEEVDKLAREPNTVVMSCEMELGIQ 282
                   59*****887766559**********************778**********5549****************************************** PP

  MMR_HSR1_Xtn  95 eLkekiweeLnL 106
                   +++e+iw +LnL
    CCD24515.1 283 DVVEEIWYQLNL 294
                   **********97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.8   0.0     2e-24   2.7e-21       1     105 [.      66     175 ..      66     184 .. 0.83

  Alignments for each domain:
  == domain 1  score: 75.8 bits;  conditional E-value: 2e-24
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETTTTCSHHHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdaseeklkpldeele 98 
                 +v+++G+p vGKS+L+ ++t +k++++++++tT++ + g +k++g ei++vD+pG+i gas++kg g+++ a  + adl+l+v+da++   ++++e+le
  CCD24515.1  66 RVVLIGYPSVGKSSLLGQITSTKSEIAHYAFTTLTSVPGVLKYQGAEIQIVDLPGIIYGASQGKGRGRQVVATARtADLVLMVLDATK--SEHQRESLE 162
                 699****************************************************9999************988878********883..344555555 PP

                 HHHHH......TT CS
    MMR_HSR1  99 ellee......ak 105
                 + le       ++
  CCD24515.1 163 KELEAvgirlnKE 175
                 5544333335444 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   8.4e-23   1.2e-19       2      60 .]     296     368 ..     295     368 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 8.4e-23
                 EEEE.TTSSEEE......EETTB-HHHHHHHHSTTHHHHEEEEEECS.......EEEETTSBB-SSEEEEEEE CS
         TGS   2 rvyt.PdGkvpd......lprgatveDfAykIhrslakkfiyAlVnG.......qrvgldhvLedgdvveIvt 60 
                 rvyt ++G  p+      +++++t+ D++++Ihr++++kf+yAlV+G       q++gl+h+++d+dvv+++t
  CCD24515.1 296 RVYTkKRGVRPKfddplvVRTNSTIGDLCHSIHRDFKEKFKYALVWGssakhspQKCGLNHKIDDEDVVTLFT 368
                 8***99*****9**********************************************************987 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0     3e-16   4.2e-13       2      93 ..      66     156 ..      65     170 .. 0.89

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 3e-16
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH.CTSSSEEEEEEEGGGHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsayseeekvardfll.eeepdvvvnvvdatnler 93 
                 +v+l+G p vGk++l+ ++t +k++++ ++ +t     g lk++g e++ivDlPGi  +   s+ +   r++++  +++d+v+ v+dat+ e 
  CCD24515.1  66 RVVLIGYPSVGKSSLLGQITSTKSEIAHYAFTTLTSVPGVLKYQGAEIQIVDLPGI--IYGASQGKGRGRQVVAtARTADLVLMVLDATKSEH 156
                 699****************************************************8..456777778888888735679*********98765 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.2    0.0051       7.1       1      22 [.      67      88 ..      67     112 .. 0.71
   2 !   13.6   0.0   3.8e-05     0.053     101     154 ..     111     165 ..     104     173 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0051
                EEEEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlged 22
                ++++G  S GKSS+l +++  +
  CCD24515.1 67 VVLIGYPSVGKSSLLGQITSTK 88
                799************9997643 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.8e-05
                 -SEEEEE---B-SSSGTTS...HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHH CS
   Dynamin_N 101 kgltlvDlPGldsvnkrdq...elvkeyikkadiilavtsanhdlsnsealflarev 154
                  ++ +vDlPG++  + + +   + v  +++ ad++l+v++a ++    +++ l++e+
  CCD24515.1 111 AEIQIVDLPGIIYGASQGKgrgRQVVATARTADLVLMVLDATKSEH--QRESLEKEL 165
                 6799********99988888889999999************99665..555555555 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.1e-07    0.0011       2     107 ..      66     165 ..      65     169 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.1e-07
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEE.EETTEEEEEEE--SCCCTTCCHHCHHHHHHHHHHHCTT-ESEEEEEEETTB-SHH CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksr.twdgkkinViDTPglfdlsvsadkiskeivrclllseegihalllvlslgrftee 99 
                 ++vl+G   +GkS+    i      +s++++ + t+  +     + +g +i+++D Pg++   ++ +   +++v     ++   + +l+vl++++ +++
  CCD24515.1  66 RVVLIGYPSVGKSSLLGQITS---TKSEIAHYAFTTLTSVPGVlKYQGAEIQIVDLPGIIYGASQGKGRGRQVV----ATARTADLVLMVLDATKSEHQ 157
                 89***********75555544...4577665555544444444599*************999998887777777....466679********9988877 PP

                 HHHHHHHH CS
        AIG1 100 dekalktl 107
                  e++ k+l
  CCD24515.1 158 RESLEKEL 165
                 77766666 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   7.7e-05      0.11       1      28 [.      66      93 ..      66     185 .. 0.77
   2 ?    0.9   0.1      0.37   5.1e+02      48     119 ..     171     254 ..     149     255 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.7e-05
                EEEEESSTTSSHHHHHHCHCT-CCC-EE CS
         Roc  1 KvvlvGdsgvGKtsllkrfvedkfseke 28
                +vvl+G  +vGK+sll ++++ k +  +
  CCD24515.1 66 RVVLIGYPSVGKSSLLGQITSTKSEIAH 93
                69****************9988776444 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.37
                 TTBTTTTCEEEEEEEE-SGG.CTTTT-HHHHCTSCEEEEEEE.........GHHHH.CHHHHHHHHHHHCSSS.-EEEEEE-TT CS
         Roc  48 endkkvkkvklniWDtaGqe.rfrslhplylreaalailvyd.........srsse.nlkeWlkelkkvagks.pvilvgnkiD 119
                 + +k++ ++ ++   t+G +  f +  + yl+e+ + +++ d          r+++ ++++ ++ l+++ ++  +++ v nkiD
  CCD24515.1 171 RLNKEKPNIYFKKKETGGVKvTFTAPPKKYLTEDGIKMILKDyrihnadvlVRDDQcTIDDFIDILNDQHRNYvKCLYVYNKID 254
                 444455556666667777541455556677777777777665444433333222223567888888877666537888999998 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.1e-05     0.098       4      58 ..      65     120 ..      62     130 .. 0.77
   2 ?    0.5   0.1      0.26   3.6e+02     130     150 ..     154     174 ..     133     195 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.1e-05
                 -EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG...GGTT-SEEEETT CS
       SRPRB   4 pavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgskltliDfPG 58 
                  +v+l+G    GK sl+ ++t+ + + +  +    +++  v + +g +++++D+PG
  CCD24515.1  65 ARVVLIGYPSVGKSSLLGQITSTKSEIAHYAFtTLTSVPGVLKYQGAEIQIVDLPG 120
                 579******************996555555542333333344559**********9 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHCHHH CS
       SRPRB 130 pklikdaLEkElnkiierrsk 150
                  +  +++LEkEl+ +  r +k
  CCD24515.1 154 SEHQRESLEKELEAVGIRLNK 174
                 4556899*****988665544 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00065      0.89       1      23 [.      66      88 ..      66     119 .. 0.81
   2 ?    2.6   0.1     0.067        92      61      98 ..     232     269 ..     198     292 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00065
                EEEEEESTTSSHHHHHHHHHHSS CS
         Ras  1 KlvlvGdsavGKtslllrfvkdk 23
                ++vl+G  +vGK+sll + ++ k
  CCD24515.1 66 RVVLIGYPSVGKSSLLGQITSTK 88
                59**************9887655 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.067
                 GHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHH CS
         Ras  61 fkslrelyyrdaegillvyditsresfenvkkwveeik 98 
                 f  + +   r+   +l vy+  ++ s+e+v+k+ +e +
  CCD24515.1 232 FIDILNDQHRNYVKCLYVYNKIDAVSLEEVDKLAREPN 269
                 33344444455555555555555555555555555433 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.5e-05       0.1      55      94 ..      62     102 ..      51     112 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.5e-05
                 CSS-EEEEEESSTSTHHHHHHHHHH.HSSSEEEEESSSSSS CS
         MCM  55 rgdinvllvgdpgtaKsqlLkyvek.lapravytsgkgssa 94 
                  gd  v+l+g p+++Ks lL ++++  ++ a y+  + +s 
  CCD24515.1  62 SGDARVVLIGYPSVGKSSLLGQITStKSEIAHYAFTTLTSV 102
                 6999****************988651566677776666555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   7.8e-05      0.11      19      48 ..      60      87 ..      56     176 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 7.8e-05
      AAA_16 19 vrsgrpelvllsGesGvGKsslvrellral 48
                ++sg+   v+l+G++ vGKssl+ ++    
  CCD24515.1 60 AKSGD-ARVVLIGYPSVGKSSLLGQITS-T 87
                55666.4677*************99984.3 PP

>> DUF1178  Protein of unknown function (DUF1178)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   0.00018      0.25      88     142 ..     154     208 ..     127     211 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00018
     DUF1178  88 laelrrkveknsedVGerFaeeArkihygeaeeraIrGeataeeakeLleeGiev 142
                  ++ r+++ek+ e VG r  +e  +i+ +++e+ +++ + ta  +k L+e+Gi++
  CCD24515.1 154 SEHQRESLEKELEAVGIRLNKEKPNIYFKKKETGGVKVTFTAPPKKYLTEDGIKM 208
                 5567899**********************************************97 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0015       2.1     100     123 ..      65      88 ..      58     121 .. 0.86
   2 ?   -1.0   0.0       1.1   1.4e+03      18      78 ..     144     171 ..     133     195 .. 0.57
   3 ?    0.9   0.1      0.27   3.7e+02      42      75 ..     239     271 ..     207     294 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0015
                  SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpel 123
                    +vl+G   vGKS+L+ ++++++
   CCD24515.1  65 ARVVLIGYPSVGKSSLLGQITSTK 88 
                  5689**************999863 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
                  EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSE CS
  RsgA_GTPase  18 qllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgye 78 
                   +l+v                                 +D +++e++ e+l++elea+g++
   CCD24515.1 144 LVLMV---------------------------------LDATKSEHQRESLEKELEAVGIR 171
                  33344.................................44444444455555555555544 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.27
                  HHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHT CS
  RsgA_GTPase  42 aeekgiepvivlnKiDlleeeeeleelkeeleal 75 
                   +++ ++ + v nKiD ++ ee +++l+ e +++
   CCD24515.1 239 QHRNYVKCLYVYNKIDAVSLEE-VDKLAREPNTV 271
                  4566678888999999999998.66655544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2687.96
//
Query:       CCD24516.1  [L=259]
Description: hypothetical protein NDAI_0D02020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-12   48.0  14.3    1.5e-12   47.5  14.3    1.2  1  Yip1      Yip1 domain


Domain annotation for each model (and alignments):
>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5  14.3   8.6e-17   1.5e-12      17     163 ..     106     243 ..      90     257 .. 0.85

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 8.6e-17
        Yip1  17 p...........ilrapdlallllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliakllg.gkgsfkqtlsv 103
                             il+++dla++l+++l + l+ll++                 +++++g+i+g +l   +g + l  l +l++ +   ++  f  t s+
  CCD24516.1 106 IptrstasvsqeILHDSDLAGPLIFFLLFGLSLLTA-----------------GKIHFGYIYGVAL---FGTVSLHNLSKLMCNMNTgTSLQFFNTASI 184
                 444555555566999*********************.................899****999999...9***********99987745666******* PP

        Yip1 104 vgyallPlilgaliaillllllgtllllvgllaliWslvllylglkaahnlskkkallaa 163
                 +gy++lPl+++++i+i+ +l ++t ++++g ++++Ws++  +++l+++  l + +al+a 
  CCD24516.1 185 LGYCFLPLCFLSIIGIFHSL-NDTMGYVLGCIFVLWSTWSSSGFLNSLLELYNARALIAY 243
                 **************998776.5556**************************999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       622  (0.0346924); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2111.39
//
Query:       CCD24517.1  [L=579]
Description: hypothetical protein NDAI_0D02030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-89  299.6   0.8    1.5e-87  293.9   0.8    2.2  1  tRNA-synt_1g  tRNA synthetases class I (M)
    5.9e-26   90.9   1.1    2.5e-12   45.8   0.1    3.4  3  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    1.4e-07   31.1   0.1     0.0013   18.1   0.0    2.2  2  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.9   0.8   2.5e-91   1.5e-87       3     390 ..      28     413 ..      26     414 .. 0.90

  Alignments for each domain:
  == domain 1  score: 293.9 bits;  conditional E-value: 2.5e-91
                   EEE--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-.HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHH CS
  tRNA-synt_1g   3 vttalpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvt.peelvekvheeikelfkklnisfdkygrttseehke 98 
                   +tt+++Y+n+k+HlGhl++ +  D+f+R++++++   lf +gtDehG +i+++Aek+g t p+ +v+k ++ + +l +++ni+f+ ++rtt+ +h +
    CCD24517.1  28 ITTPIFYPNAKPHLGHLYSSLLCDVFHRWNQMKNVPSLFTTGTDEHGLKIQMAAEKNGFTnPKFFVDKLYQDFISLDQHFNIKFTRFIRTTDPDHIK 124
                   9*********************************************************7648899******************************** PP

                   HHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-EE........-TTS-EE-TTSSB-E................EEE.EEEEEE-GGGGHHHH CS
  tRNA-synt_1g  99 lvqeifkklkekgliyekeieqlycpkderflpdryvegtCPkckseeargdqceecgkkleptelinpksaisgskpevketehlffklskfekkl 195
                    v+++++ + ++g+iy++e +++y+ +de+f+p++ +  + P+      ++d++ +  ++ e                 ++++e++ffkls f++kl
    CCD24517.1 125 NVEQLWNLCLNNGFIYKGEHNGWYSISDETFYPESKII-KDPH------NNDKYINTETNNE---------------VFFQSEENYFFKLSTFQEKL 199
                   ************************************83.3453......4455555444444...............67999*************** PP

                   HHHH.HH-TT...SHHHHHHHH.HHHHT-..---EE-E...SS-SSS-EETTECCEEE-HHHHHHHHHHHTTTTT-....................T CS
  tRNA-synt_1g 196 kewieeeeke...leenvkkivkewlkeg..Lkdlais...rdldwGipvPgaekkvlYVWldAligYisatkelakkk.................g 267
                    + i+  +++    +e+ +k++++ l++g  L+dl+is   ++l+wGi+vP+++++ +YVW+dAl +Yi++++ +                     +
    CCD24517.1 200 IHLISDPNSKfqiYPESKRKQILKELQNGtpLQDLSISrssSRLKWGIQVPNDPSQKIYVWFDALCNYITSIGGINALLitrntssgntttepttiH 296
                   ****888888888556666666666665445*******666689***************************98876333667789999999998765 PP

                   TSGGGG.G--S......EEEEEGGGHHHHHTHHHHHHHHTT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-E CS
  tRNA-synt_1g 268 eeekwkeyWakdkevelvhfigkdiikFHtifwPaillgaelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDl 364
                   e  + k +W     ++ +h+igkdi+kFHt++wP++l++a+l lpk+vv h+++  +g K+SkS g+vv++  +++++ ad++R+yl+ +++ ++D 
    CCD24517.1 297 EGIDSKVWW-----SNTTHLIGKDIMKFHTVYWPSFLMAAGLPLPKQVVIHNHWISDGLKMSKSLGNVVDPIMMANKYGADIVRWYLLENSKLDEDG 388
                   666889999.....4599******************************************************************************* PP

                   EE-HHHHHHHHHHHCCCHHHHHHHHH CS
  tRNA-synt_1g 365 dfswedfvervNseLadklgnlvnRv 390
                   df++ ++ + + s L++k+gnl+nR+
    CCD24517.1 389 DFQELKL-KSLRSLLVSKWGNLINRC 413
                   **99887.57889************8 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.4e-11   8.2e-08      32      91 ..      33      91 ..      10     154 .. 0.84
   2 !   11.0   0.0   1.5e-05     0.091     366     432 ..     174     250 ..     159     256 .. 0.86
   3 !   45.8   0.1   4.2e-16   2.5e-12     518     598 ..     293     387 ..     258     391 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 1.4e-11
  tRNA-synt_1 32 PyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekke 91
                  y + ++H+Gh + + l d+  r+++mk   +l+++G+D +Gl i+++ ek+ g ++ k 
   CCD24517.1 33 FYPNAKPHLGHLYSSLLCDVFHRWNQMKNVPSLFTTGTDEHGLKIQMAAEKN-GFTNPKF 91
                 467889********************************************98.5555544 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 1.5e-05
  tRNA-synt_1 366 erskkpiiyrateqWfvrvkeladaalkave....kvqfvpkskekryaswlen...iqdWciSRq...rwWGhrip 432
                    +++ + +++ e +f +++++++++++ ++    k q++p+sk+k++ + l+n    qd  iSR+   + WG ++p
   CCD24517.1 174 TETNNEVFFQSEENYFFKLSTFQEKLIHLISdpnsKFQIYPESKRKQILKELQNgtpLQDLSISRSssrLKWGIQVP 250
                  557788999****************99999888889*****************966669******644478**9998 PP

  == domain 3  score: 45.8 bits;  conditional E-value: 4.2e-16
  tRNA-synt_1 518 dmlleGlDiirgWvarlillslaltgse...............PfkevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltli.lsdvgrd 598
                   ++ eG+D    W ++  l++  +++ +               P k+v++h   + ++G KmSKslgNv+dp+ +++kygad++R++l+ +s+  +d
   CCD24517.1 293 TTIHEGIDSKVWWSNTTHLIGKDIMKFHtvywpsflmaaglplP-KQVVIHNHWI-SDGLKMSKSLGNVVDPIMMANKYGADIVRWYLLeNSKLDED 387
                  46899****************99998888899999999999655.5555555433.67*******************************77766655 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   3.6e-05      0.21      22     142 ..      38     159 ..      30     194 .. 0.80
   2 !   18.1   0.0   2.2e-07    0.0013     240     297 ..     339     396 ..     313     400 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.6e-05
                   --BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEBB--SHHHHHHHHHTTS-HHH.HHHHHHHHHHHHHHHTT----SB.--BGGGGHHHHHHHHHHHH CS
  tRNA-synt_1e  22 ashlGhaRslvafDilrrilqalgYdvqfvqnvtDidDkiikrareeeksvke.laekfieefkkdleaLnvlkptl.eprvsekvdeiielvekli 116
                   + hlGh  s + +D+++r+ q+++    f     +   ki   a++++ +  + +++k  ++f +  ++ n++ + + ++   ++++++ +l +  +
    CCD24517.1  38 KPHLGHLYSSLLCDVFHRWNQMKNVPSLFTTGTDEHGLKIQMAAEKNGFTNPKfFVDKLYQDFISLDQHFNIKFTRFiRTTDPDHIKNVEQLWNLCL 134
                   57*********************99999988877777788888888887776626899999999999999999865414556689************ PP

                   HTTSEEE-TTS-EEE-GGG-TTTTTT CS
  tRNA-synt_1e 117 ekgyaYavsdgdvyfdvskkeeYgkl 142
                   ++g+ Y+ +  +  ++ s++  Y + 
    CCD24517.1 135 NNGFIYKGE-HNGWYSISDETFYPES 159
                   *******99.6777888877777654 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 2.2e-07
                   EEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS.-TTS-EEE-HHHHH CS
  tRNA-synt_1e 240 yflhnghlkiegekmsksLknfitikdvlkkfdprqlRllllsa.hyrsqldfkeelle 297
                     +hn +++ +g kmsksL+n++    + +k+ + ++R++ll++ +  +  df+e +l+
    CCD24517.1 339 VVIHNHWIS-DGLKMSKSLGNVVDPIMMANKYGADIVRWYLLENsKLDEDGDFQELKLK 396
                   568888886.99***************************99864267777888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4312.35
//
Query:       CCD24518.1  [L=1147]
Description: hypothetical protein NDAI_0D02040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-52  177.8   0.0    3.1e-52  177.0   0.0    1.4  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase
    1.5e-19   70.1   0.6    5.5e-12   45.9   0.1    3.3  3  C2              C2 domain
     0.0029   17.3   2.5     0.0074   16.0   2.5    1.7  1  RRM             Putative RRM domain


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.0   0.0   5.2e-56   3.1e-52       1     199 [.     875    1083 ..     875    1084 .. 0.90

  Alignments for each domain:
  == domain 1  score: 177.0 bits;  conditional E-value: 5.2e-56
  PS_Dcarbxylase    1 lneffvrklkdgaRpi.dddpgaivsPaDgrilqigeieegsviqvKgityslrdLlgeasessadsfkngyfvviyLspgdyHryhaPvsgk 92  
                      +neff+rklk+g R + ++dp  ++sPaD+r++ + ++++++ i++Kg ++s+  L ++++ +   + k +++ +++L+p+dyHr+h+P++gk
      CCD24518.1  875 FNEFFYRKLKPGSRLPeSNDPRVLISPADSRCTMFSTVHQSKEIWIKGDKFSIGRLTQNHRLDM-FNDKSCSLGIFRLAPQDYHRFHSPCNGK 966 
                      8*************997888999*************************************9965.5555889999****************** PP

  PS_Dcarbxylase   93 veerrhipGellsvnpsalkelrglftlneRvvlview..kGkvavvpvGatnvgsivlnvlkgdelkkGeelGyFqf.GStvvlvfeag..k 180 
                      + +  +++G++++vnp+a++++ ++f +n Rv++ ie+  +G+++++p+Ga++vgsi l+v++ +++ +G+elGyF+f GSt+v+v++ +   
      CCD24518.1  967 ILKPIYVEGNYYTVNPMAVRSELDIFGENVRVIVPIESpeFGTILFIPIGAMMVGSIILTVEESETVVRGQELGYFKFgGSTIVIVIPSQkvI 1059
                      *************************************5569***********************************************77553 PP

  PS_Dcarbxylase  181 fieslvekgq.....kvkmGeklg 199 
                       +++l++++       vk+G ++g
      CCD24518.1 1060 LDSDLLKNSSegietLVKVGMSIG 1083
                      334444444345556777777666 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   5.7e-08   0.00034       2      71 ..      19      87 ..      18      96 .. 0.81
   2 ?   -2.5   0.0         1   6.2e+03      80     101 ..     162     183 ..     151     185 .. 0.74
   3 !   45.9   0.1   9.2e-16   5.5e-12       5     100 ..     502     603 ..     498     606 .. 0.85

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 5.7e-08
                EEEEEEEEEESS.SSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC.HTTSEEEEEEEE CS
          C2  2 klevtvieAknL.pnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae.leeakLeveVfd 71
                +l+++vi+A+n+   k k   ++p + v  + ++ akT+  kns n +Wne+++++++  ++++ L++  +d
  CCD24518.1 19 TLKIQVIQARNIdIIK-K-FDCSPVCFVGTNINSYAKTNKLKNS-NTKWNESIKLKLPRnPNSEWLHLAMYD 87
                699*********5444.3.3555655555555999999967999.**************999999*999998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1
                 EEEEEEEEGHHHHTTHHHHEEE CS
          C2  80 fiGkveiplstllsgeeaegwy 101
                  iG+v+i+l +l +++  + +y
  CCD24518.1 162 YIGEVSISLLDLFQNADSSTSY 183
                 79******99988887776665 PP

  == domain 3  score: 45.9 bits;  conditional E-value: 9.2e-16
                 EEEEEEESSSSSST.....TSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESC.HTTSEEEEEEEEECSSSTEEEEEEEEEEGHH.HHTTHH CS
          C2   5 vtvieAknLpnkdk.....kgssdpyvkvsldgkqkakTrviknslnPvWnekftfevae.leeakLeveVfdndrlskddfiGkveiplst.llsgee 96 
                 ++  + +nLp+        +  +dp++  ++ g +++k++ +k  lnP++ne ++fe+++ + +   +++V d+d++s++d i ++++  ++ ++s++ 
  CCD24518.1 502 IKLDKIRNLPQLRNkisrtNYFMDPFIITTF-GRRVFKSSWKKHDLNPIFNEYIVFEIYPtEMDYGFHFKVIDKDSFSSNDEIAECSLTWKEmINSQAT 599
                 5666788897773324443444*********.********99**************************************************7777777 PP

                 HHEE CS
          C2  97 aegw 100
                   +w
  CCD24518.1 600 TPEW 603
                 7777 PP

>> RRM  Putative RRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.5   1.2e-06    0.0074      13      50 ..      97     134 ..      91     136 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.2e-06
         RRM  13 YgasLLPShLLvgSPFissPnlpsqyappslanssska 50 
                 Y ++L PS +L++SP +s+ +l sq +++++ n+s++ 
  CCD24518.1  97 YNKPLYPSSMLLNSPSVSTISLNSQISSSRHGNESNTR 134
                 999*************************9999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.25s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 8150.17
//
Query:       CCD24519.1  [L=90]
Description: hypothetical protein NDAI_0D02050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.74    9.0   5.8       0.79    8.9   5.8    1.1  1  Ribosomal_S2  Ribosomal protein S2


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   5.8   4.4e-05      0.79      65     126 ..      18      80 ..       5      90 .] 0.71

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 4.4e-05
  Ribosomal_S2  65 kkqakeavkeaakr.angyyvnerWlgGtLTNfktikksikklkeleeleedgeldltkkeal 126
                   kk+ +  +k+ a+r  +     ++W++G   N ++++++ kk ++l++++e+++l   ++e+l
    CCD24519.1  18 KKAENAKIKARAEReRKEAEEASKWTQGAKSNQRKLEEEQKKQEKLKAKKEREALLAAEEEEL 80 
                   567777788889883444455899***************999999988876666643333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3159  (0.176195); expected 358.6 (0.02)
Passed bias filter:                      814  (0.0454013); expected 358.6 (0.02)
Passed Vit filter:                       151  (0.00842211); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 686.46
//
Query:       CCD24520.1  [L=406]
Description: hypothetical protein NDAI_0D02060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-27   94.6   0.0    9.9e-27   94.0   0.0    1.3  1  PseudoU_synth_2  RNA pseudouridylate synthase
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.029   14.1   0.1    1.6  1  partial_CstF     Partial cleavage stimulation factor domain


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   0.0   1.1e-30   9.9e-27       1     159 [.     123     292 ..     123     293 .. 0.89

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 1.1e-30
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvf...gapeee 91 
                      d++v+nKP+g+p +p++      +          +++ k + ++ RLDk tsGll++Ak++ aa k++ ++++r ++K Yla v+    + +e+
       CCD24520.1 123 DILVINKPNGIPIHPTG------QFYQNTITEILKSHDKPVLPCYRLDKVTSGLLIMAKNKIAAGKVQSKIRARDMSKLYLARVQgkfPNVPER 210
                      579**************......6666666677778889999*******************************************666455666 PP

  PseudoU_synth_2  92 egaikkkiskd.................tekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                      + +i++ i++                   + + ++ + a  +  ++a+t + +l++     ++++s+v +++ tGr+hQiR+hla
       CCD24520.1 211 SMIINNTINDAsimfddstivttvdshvYTIEPKKQFPAGLSMSREAITLFYPLSYL---PKENQSVVVCKPLTGRTHQIRIHLA 292
                      6777777777788888888899888888888889999999*****************...***********************98 PP

>> partial_CstF  Partial cleavage stimulation factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   3.2e-06     0.029       4      47 ..      60     103 ..      57     104 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.2e-06
  partial_CstF   4 ddllsgvepaeeaLVdeViknkdiLqnilkskpedmtsWpsEqk 47 
                   + + ++++    +  +  iknkdi++ i       + +W +Eq 
    CCD24520.1  60 KIIRDDIPLKPTEVFESAIKNKDIIETISHKHEPPVRQWCNEQE 103
                   5444899999999*****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       553  (0.0308439); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3179.25
//
Query:       CCD24521.1  [L=72]
Description: hypothetical protein NDAI_0D02070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-20   72.7   3.6      3e-20   72.4   3.6    1.1  1  ATP_synt_H       ATP synthase subunit H
     0.0012   17.5   0.6     0.0012   17.5   0.6    1.0  1  MFS_2            MFS/sugar transport protein
  ------ inclusion threshold ------
      0.026   14.5   0.3      0.026   14.5   0.3    1.0  1  Halogen_Hydrol   5-bromo-4-chloroindolyl phosphate hydrolysis
      0.031   14.1   0.2      0.034   14.0   0.2    1.1  1  DUF5373          Family of unknown function (DUF5373)
      0.041   13.2   2.2      0.043   13.2   2.2    1.0  1  Glucos_trans_II  Glucosyl transferase GtrII
       0.15   12.0   0.6       0.15   12.0   0.6    1.7  2  FixQ             Cbb3-type cytochrome oxidase component FixQ
       0.21   10.8   2.5       0.26   10.5   2.5    1.0  1  DUF1385          Protein of unknown function (DUF1385)


Domain annotation for each model (and alignments):
>> ATP_synt_H  ATP synthase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   3.6   1.2e-23     3e-20       3      61 ..       7      64 ..       5      65 .. 0.91

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 1.2e-23
                HHHHHHHHHHHTCSCSSS-S.TTHHHHHHHHHHHHHHHHHTCHHTSSSS-SS---XXSX CS
  ATP_synt_H  3 lvgtiifavlgvvatfvvpkgenrglirvlviltavccWlfWlcvYlaQmnPLiaPils 61
                l +++ +++++vv+++++pk en++++r++v+l++++++l+W+++Yl Q++PLi+P++s
  CCD24521.1  7 LGVLFTVIIISVVFWVLAPK-ENQTVWRSTVTLSLAMMFLMWAITYLTQLHPLIEPRRS 64
                5566778889*********9.8***********************************97 PP

>> MFS_2  MFS/sugar transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.6   4.8e-07    0.0012     143     199 ..       4      60 ..       1      71 [. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.8e-07
       MFS_2 143 svlggvlaailafllvlilgglkserkgylifaliialLmllgviivvlgtkervem 199
                  ++ gvl++++++ +v++  ++k++++ ++ ++ +  ++m+l+  i++l++ +   +
  CCD24521.1   4 YTVLGVLFTVIIISVVFWVLAPKENQTVWRSTVTLSLAMMFLMWAITYLTQLHPLIE 60 
                 4666788999999999999999***************************99988765 PP

>> Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.3     1e-05     0.026       2      45 ..       7      50 ..       6      69 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1e-05
  Halogen_Hydrol  2 lgwllsiliavivalvsffllgfsfflalliailggilvyvasr 45
                    lg+l++++i+ +v++v++   +++++ +++++ l+++++++a+ 
      CCD24521.1  7 LGVLFTVIIISVVFWVLAPKENQTVWRSTVTLSLAMMFLMWAIT 50
                    89999***********************9999999999999876 PP

>> DUF5373  Family of unknown function (DUF5373)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   1.3e-05     0.034      92     147 ..       7      61 ..       1      70 [. 0.69

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
     DUF5373  92 vplavlvlliilaflkilflnleaielksvlslvvaliilcvyivYltlCrkLvka 147
                 + +  + ++ii++++ +l+ + +++  +s+++l  a+++l+  i Ylt  + L++ 
  CCD24521.1   7 LGVL-FTVIIISVVFWVLAPKENQTVWRSTVTLSLAMMFLMWAITYLTQLHPLIEP 61 
                 3333.23333344444455556788889999********************99974 PP

>> Glucos_trans_II  Glucosyl transferase GtrII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.2   1.7e-05     0.043     226     279 ..       2      55 ..       1      64 [. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
  Glucos_trans_II 226 kpkklllililliliilllalllkkkkkkkksllllllllllllpfalnlillk 279
                      +++++l++l+ +i+i +++++l  k+ +  ++  + l l++++l  a++ ++  
       CCD24521.1   2 SFYTVLGVLFTVIIISVVFWVLAPKENQTVWRSTVTLSLAMMFLMWAITYLTQL 55 
                      689999*************************99888888888888888776644 PP

>> FixQ  Cbb3-type cytochrome oxidase component FixQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.6     6e-05      0.15      11      35 ..       4      28 ..       3      33 .. 0.89
   2 ?   -0.9   0.1      0.66   1.7e+03      18      21 ..      42      45 ..      29      53 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6e-05
        FixQ 11 dswgllflvllfygvviyafrpgnr 35
                ++++ ++++++ + vv++++ p+ +
  CCD24521.1  4 YTVLGVLFTVIIISVVFWVLAPKEN 28
                788999**************99975 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.66
        FixQ 18 lvll 21
                ++ l
  CCD24521.1 42 MMFL 45
                2222 PP

>> DUF1385  Protein of unknown function (DUF1385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.5    0.0001      0.26     139     179 ..       9      52 ..       7      58 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
     DUF1385 139 flllvlivsilvfslvgassll...lrvllrllllpvvagisYe 179
                  l++v+i+s+++ +l+++++ +    +v+l l+++ ++ +i+Y 
  CCD24521.1   9 VLFTVIIISVVFWVLAPKENQTvwrSTVTLSLAMMFLMWAITYL 52 
                 5899********999887765555667788999999******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1193  (0.0665402); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 516.93
//
Query:       CCD24522.1  [L=382]
Description: hypothetical protein NDAI_0D02080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       684  (0.0381505); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2666.82
//
Query:       CCD24523.1  [L=234]
Description: hypothetical protein NDAI_0D02090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-54  183.4  18.5    7.9e-54  183.1  18.5    1.0  1  Clathrin_lg_ch  Clathrin light chain


Domain annotation for each model (and alignments):
>> Clathrin_lg_ch  Clathrin light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.1  18.5   4.4e-58   7.9e-54       1     230 []       1     234 []       1     234 [] 0.90

  Alignments for each domain:
  == domain 1  score: 183.1 bits;  conditional E-value: 4.4e-58
  Clathrin_lg_ch   1 maDkFpsle.deg.............aeteasaaaeedpaadFLarekaelgddaqfateqdeealleaeeeeddllgaaaangeedeeidefes 81 
                     m+DkFp+l+ de+             ++ e+s+++e++++++FL+re+++lgd+  f+teqd+++l        d +       +++eei++f++
      CCD24523.1   1 MSDKFPALDhDEQiipddvsddnninNDVEVSNDNENNDETAFLKREAEVLGDE--FKTEQDDDLL--------DPV-------DAHEEIENFQD 78 
                     99*******86668999999999999999999**********************..*********7........222.......46799****** PP

  Clathrin_lg_ch  82 qfpaieaadeqvapegtites.....eess...saeeeeeeepesirkWReerkkeieerdeasekkkeetkekAkkeiddfyenynekkektka 168
                     q+p+i+++++ + + +++  +     e  s   s++++++  +e++ +WRe+r++ i+e+dea+ k+k++++e+A + i +fye+yn kkek+++
      CCD24523.1  79 QYPDINDVSAGNVDINENIVKneshlE--SatkSQQATPSGPSEAVTQWRENRANAIREKDEADYKEKASLQEEATEYILNFYEEYNAKKEKQIE 171
                     ******888876655444444455542..134689999********************************************************* PP

  Clathrin_lg_ch 169 qnrkeeeeflkerddt.spgGteWeRvakLvdfnpkssksgkdksRfrelLlsLKqdekaPga 230
                      ++ke eefl++rd++ ++++t+W+Rv +L+++ +    +g+d+s+f+e+Ll+LK+++++Pga
      CCD24523.1 172 ITQKESEEFLQHRDEFfAQDNTTWDRVLQLINLDDADVFAGRDRSKFKEILLKLKGKTEVPGA 234
                     *********************************99999***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1757  (0.0979977); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1740.66
//
Query:       CCD24524.1  [L=560]
Description: hypothetical protein NDAI_0D02100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-42  146.2   3.0    3.5e-42  144.9   3.0    1.7  1  Trs65     TRAPP trafficking subunit Trs65
  ------ inclusion threshold ------
        1.6    8.8   8.5        1.9    8.5   1.8    3.1  3  DUF916    Bacterial protein of unknown function (DUF916)


Domain annotation for each model (and alignments):
>> Trs65  TRAPP trafficking subunit Trs65
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   3.0     4e-46   3.5e-42       2     316 .]     246     559 ..     245     559 .. 0.81

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 4e-46
       Trs65   2 pffdcevvlekidlslkggtvedl..nqkdglslPlscvahDhltllYkLa..peeldvk.................lesnsssksssrelsIsieakv 79 
                 +++++e+ ++++ ++l ++   ++  ++++++++P++   +D+++++YkL   p++ +++                 ++++s    s++++++++ +++
  CCD24524.1 246 NQSEFELFFKDVIFELIDQ-NGQIklDHISNFEIPFKATLYDSFSICYKLPliPRSPSSNnttlpningsstsgffsSSASSMLLPSTHRVRVTLIYEL 343
                 6789999999**9999994.33333488999********************9944443335679************999999999************** PP

       Trs65  80 lvspk.ctpkismsWtTsldftlpvnpgfgtpsqsssliqrshrpsqlsisggsassslsspsvsrpdalpsleasasrtretsspdlgitltfsgpsk 177
                 ++ ++  +  i+++W+T+++++     ++ t+ ++s+l+++++r++ +           ss+++s ++ ++         +  +++  +++++f++++ 
  CCD24524.1 344 NLPHErTKIPIMTKWETDVTLK-----KQPTVPNNSMLTNTQKRFYGVAT---------SSSRFSIQS-TT---------SLVNNKVNNVKFKFINNNL 418
                 *877776667************.....5566777888999******8882.........222333332.22.........234567789********** PP

       Trs65 178 kvkvGeefswkvfvvNrsskerkLaLivipkrrrnevrvsrpssssassk....nkkdeevadavldenvvhamqksskvdsaevvcLsnDiRvGpLap 272
                 kv +Ge+f+++++++N+ss++++L+++++++   n + ++ +s  +++      +  ++ ++ ++ ++  +  ++ +s++   ++++LsnD++++++ p
  CCD24524.1 419 KVLKGEKFTLRLQIINSSSTALNLVVYYNNTVSNNPSTMTTTSAGNMKGTnnfeRFPTPGIKLSLEKQIEMRRLNTQSSQ---GIILLSNDYNIPVIGP 514
                 ********************************966655555555555555656533455566666666666666665555...**************** PP

       Trs65 273 gacyevelrflalreG.vlsleavrvvDlgsqehvdirelpevvv 316
                 +++y+v+lr++++++G + +l +++++Dl+s+e+++++   +v+v
  CCD24524.1 515 QESYFVDLRLIGIMSGyYSNLSGLKILDLNSNEVIEVGMGASVLV 559
                 ****************8899*******************999987 PP

>> DUF916  Bacterial protein of unknown function (DUF916)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.3     0.015   1.3e+02      18      83 ..      74     142 ..      67     156 .. 0.68
   2 ?   -1.3   0.0      0.25   2.2e+03      79     117 ..     354     392 ..     341     395 .. 0.78
   3 ?    8.5   1.8   0.00022       1.9      20      59 ..     417     456 ..     397     488 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.015
      DUF916  18 YFdLkvkpgqeqelevkikNs..sdkeitveitvntAvTnd.nGvidYskskekkdkslkvslselvki 83 
                  FdL +  ++ +el  ++k +  +d+  + ++ +n+  +n+   v++Ys ++ ++ ++   + +++++ 
  CCD24524.1  74 VFDLILPESTDDELIWEMKSNisTDHMFRSSVVMNNGSSNNiIVVVKYSYKQAAYSENNISQEKNIATE 142
                 588888888888888877765114555666666777766551678899988888766555555555544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.25
      DUF916  79 elvkipkeitlpakesktvklkikmPkeefdGvilGGiy 117
                  ++k ++ +tl+++ ++  +  ++  +++f Gv   + +
  CCD24524.1 354 IMTKWETDVTLKKQPTVPNNSMLTNTQKRFYGVATSSSR 392
                 466777899999999999999999999999999877665 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00022
      DUF916  20 dLkvkpgqeqelevkikNssdkeitveitvntAvTndnGv 59 
                 +Lkv +g++ +l+++i Nss++++++ +  n+ v+n+  +
  CCD24524.1 417 NLKVLKGEKFTLRLQIINSSSTALNLVVYYNNTVSNNPST 456
                 799********************************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       767  (0.0427799); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 4333.88
//
Query:       CCD24525.1  [L=353]
Description: hypothetical protein NDAI_0D02110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-58  196.1   0.5      7e-58  195.6   0.5    1.2  1  Bot1p     Eukaryotic mitochondrial regulator protein
     0.0032   17.6   0.1     0.0095   16.2   0.1    1.7  1  DUF2316   Uncharacterized protein conserved in bacteria (DUF2


Domain annotation for each model (and alignments):
>> Bot1p  Eukaryotic mitochondrial regulator protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.6   0.5   7.9e-62     7e-58       2     167 ..     139     306 ..     138     311 .. 0.93

  Alignments for each domain:
  == domain 1  score: 195.6 bits;  conditional E-value: 7.9e-62
       Bot1p   2 lqPFPlNpsfrsepvlseelreeIyeevakkgksvrevSvkygvkikRveAivrLkelekkw..knkgkpllkkysralekmlPlnapekkakeenlnd 98 
                 lqPFP+Np++++++++s+el+ eI++ ++++g s+++vS+k+g+ki+R+eAi++L ++ekkw  +n+++++lk++s+++ +m+P+++pe   k+enl++
  CCD24525.1 139 LQPFPSNPHCKTNYIISDELKGEIVNMISNDGFSTQQVSQKLGIKIPRIEAILKLSQIEKKWeaQNRINSNLKEFSNTMFNMFPIFKPE--IKRENLSE 235
                 89************************************************************999*********************999..9******* PP

       Bot1p  99 ipvpsktassrfvpvaesepFtpvdaakvlelepaaetlekaeevkeekesaeevteeeakk..kkvvlke 167
                 ipvp+kt ssrfv+++esepF+pvdaa++lelepa +tle++++++e+++ + ev ++++ +  k+ vl+e
  CCD24525.1 236 IPVPEKTLSSRFVTLSESEPFGPVDAAELLELEPAVKTLEQLATTGEHSQGHLEVLQNKKLNnkKRIVLGE 306
                 ****************************************************9998888544324445555 PP

>> DUF2316  Uncharacterized protein conserved in bacteria (DUF2316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.1e-06    0.0095      19      69 ..     166     214 ..     155     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.1e-06
     DUF2316  19 felsgltveevaedLnlttekvekvLelkasrledvWilrdyLeekikeqg 69 
                  +  g ++++v ++L+++  ++e++L+l+  ++e+ W  ++ +++++ke  
  CCD24525.1 166 ISNDGFSTQQVSQKLGIKIPRIEAILKLS--QIEKKWEAQNRINSNLKEFS 214
                 5667899*********************8..89*************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2691.35
//
Query:       CCD24526.1  [L=690]
Description: hypothetical protein NDAI_0D02120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-09   37.9   0.2      1e-07   32.0   0.2    2.5  1  Sad1_UNC      Sad1 / UNC-like C-terminal
  ------ inclusion threshold ------
        1.6    9.0   8.0        9.4    6.6   1.7    2.9  3  DUF4709       Domain of unknown function (DUF4709)
        4.7    7.2  17.8       0.12   12.4   2.3    4.0  5  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C


Domain annotation for each model (and alignments):
>> Sad1_UNC  Sad1 / UNC-like C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.2   1.7e-11     1e-07      23     128 ..     484     616 ..     465     620 .. 0.87

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 1.7e-11
                 EEESS-EEEEEEEEEEEEEEEEEEE---GGGSG..-TTSB-EEEEEEESSTT---.....................-EEEEEEE-.-TTS-SEEEEE-- CS
    Sad1_UNC  23 sfkgsrgfvvieLseeiiveavtlehveksvap..isSapKdfevsgskrypekk.....................wvllgefsy.dedgknaqtFele 97 
                 s +g ++ ++i+++e+i+++++++ h ++      ++Sap+ +++++  + ++++                     ++++ + +y  +d ++ qtF+l 
  CCD24526.1 484 SKSGYKCSWAIRFQEPIYLTKISYVHGRFLNNLhmMNSAPRLISLYVRLTNNKDTeelirrakkhnqgqtfvksydYIKISQHTYsIDDLETRQTFPLP 582
                 5678899*******************9995544789***********98888887799**********9999999999999999977889999*****9 PP

                 TT---...-EEEEEEEE--BSS-SSEEEESEEEE CS
    Sad1_UNC  98 eskdi...lvkyvkleilsnyGneeytclyrlrV 128
                 +   +   lv  + ++i +nyGne+yt+l ++ +
  CCD24526.1 583 KWYIEmkpLVHSLVFQIDDNYGNEKYTSLKKFLI 616
                 99544778999999***************99976 PP

>> DUF4709  Domain of unknown function (DUF4709)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.8   1.1e+04      56      73 ..       5      22 ..       3      26 .. 0.82
   2 ?    5.2   0.1    0.0041        25      66     103 ..     183     220 ..     178     225 .. 0.54
   3 ?    6.6   1.7    0.0016       9.4      15      87 ..     325     400 ..     321     416 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.8
     DUF4709 56 llqakyeeklkeealely 73
                +l++++ + + ee++el 
  CCD24526.1  5 TLEMNHTKDIDEESMELS 22
                688999999999999985 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0041
     DUF4709  66 keealelytrlndklkeleklykekvevvRksfkqQLa 103
                 +++  +ly+ ln++ +++ + + + v++v   f++ L 
  CCD24526.1 183 QKQINTLYHDLNKRDDKITNDFDKSVKIVISQFEKNLR 220
                 44445555555555555555555555555555555544 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0016
     DUF4709  15 tDhatQTdvsEilelkeltevtqkLvk..evkslkrdfef.lkqllqakyeeklkeealelytrlndklkelekly 87 
                 tD  +QT  +   +l e++++ +  +   +++ l +++++  k+   a+ ++kl+ + le+++++n+kl++++ + 
  CCD24526.1 325 TDLVAQTLNTSRDNLDEISKKWEYNMDtyITEYLTNELKYvNKHDFLAELNSKLESNKLEIFEEMNNKLNDIRFQN 400
                 6777777777777777777777654431146778888886256778999**********************98655 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.5   8.8e+03      16      34 ..      19      37 ..      16      41 .. 0.76
   2 ?   12.4   2.3     2e-05      0.12      36     104 ..     182     251 ..     177     254 .. 0.62
   3 ?    0.3   2.6      0.11   6.8e+02      28      81 ..     320     368 ..     293     396 .. 0.49
   4 ?    2.6   0.2     0.022   1.3e+02      14      31 ..     385     402 ..     371     417 .. 0.80
   5 ?   -3.6   0.1       1.8   1.1e+04      65      89 ..     627     651 ..     616     655 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.5
  Baculo_PEP_C 16 ldLtnvLnairlqnvqila 34
                  ++L++  n +r+qn ++ a
    CCD24526.1 19 MELSKEPNGLRSQNYTLNA 37
                  6888888999999999854 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2e-05
  Baculo_PEP_C  36 latlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq....dtlrneLtnlnsiltnLlssvtNi 104
                   l+++++++   Ln+ ++++++   ++d+ ++ ++++ ++ l +l      +++++L++l+ +++nL s + N 
    CCD24526.1 182 LQKQINTLYHDLNKRDDKITN---DFDKSVKIVISQFEKNLRNLLpvdlVDFKSQLDSLKGQVNNLSSIISNW 251
                   344444444444444444444...4444555555566666666556655678999***********9999996 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.11
  Baculo_PEP_C  28 qnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltn.Ltdalnalq.d 81 
                   + + i+  +a++l++   +L+++s+       + + ++dt +t+ Lt+ l+ ++  
    CCD24526.1 320 LHSYITDLVAQTLNTSRDNLDEISK-------KWEYNMDTYITEyLTNELKYVNkH 368
                   4444433344444444444444443.......333344443222144444444432 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.022
  Baculo_PEP_C  14 qfldLtnvLnairlqnvq 31 
                    f +++n Ln+ir qn q
    CCD24526.1 385 IFEEMNNKLNDIRFQNDQ 402
                   5679***********987 PP

  == domain 5  score: -3.6 bits;  conditional E-value: 1.8
  Baculo_PEP_C  65 ldtlltnLtdalnalqdtlrneLtn 89 
                   l+++  +L ++++++ d ++++ +n
    CCD24526.1 627 LKNNNGALRKSVKTVPDYIHQKVKN 651
                   5556666777777777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4995.32
//
Query:       CCD24527.1  [L=535]
Description: hypothetical protein NDAI_0D02130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   2.9e-164  547.3   4.3   3.3e-164  547.1   4.3    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
  ------ inclusion threshold ------
        0.1   12.9   0.3        0.1   12.9   0.3    2.1  2  NusA_N      NusA N-terminal domain
       0.15   12.2   0.0         31    4.7   0.0    2.7  2  DUF3683     Protein of unknown function (DUF3683)


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  547.1   4.3  5.6e-168  3.3e-164       1     488 [.      31     528 ..      31     531 .. 0.98

  Alignments for each domain:
  == domain 1  score: 547.1 bits;  conditional E-value: 5.6e-168
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHH.HHHCTXXHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaek.liaagvhpttiiegyekal 98 
                 +ad+++t+lGPk m+Kml +++g +v+TnDG++il+e+++ hPaak++ e++++qdeevGDGTttv+iLag +l +++  li++++hp+ ii++++kal
  CCD24527.1  31 VADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGDILAQCAPyLIEKNIHPVIIIQALKKAL 129
                 689*************************************************************************99626788*************** PP

                 HHHHHHHHHHXEEBXSCSTT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHHHCHCCCS.........EECSCCC.EECCCCEECECTTSEEESEEEES CS
  Cpn60_TCP1  99 ekaleaLkeiaveisseekdreeLlkvartslsskltskeaeelsklvvdAvklieene.........keldlgr.ikvvkieggsledselveGlvld 187
                 ++ale +k++++ +++e  ++e+++k+++ s+++k++s+++e++++l++ Avk+++ +           e+d++r ++v+ki gg++ ds++++G++l+
  CCD24527.1 130 SDALEVIKQVSKPVDVE--NDEAMKKLIQASIGTKYVSHWSEKMCELALSAVKIVRVDLgqtiegtpnFEIDIKRyVRVEKIPGGEVLDSNVLNGVMLN 226
                 **********6666665..899******************************9998777999***999899**************************** PP

                 S--SSTTSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEESS-B-HHHHHHHHHCT-EEE-S--HHHH CS
  Cpn60_TCP1 188 kgvlspdmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvcqkgiddlalhflakngilalrrvkkkdl 286
                 k+v++p+m++++en++++lld++Le++k e++t++++++ e+++++++ ee+q++ ++e+i + + +vv+++kg++dla+hfl k g  +lrrvkk+d 
  CCD24527.1 227 KDVVHPKMSRHIENPRIVLLDCPLEYKKGESQTNIEITNDEDWNRILQIEEEQVQLMCEQILAIKPDVVITEKGVSDLAQHFLLKGGCSVLRRVKKSDN 325
                 *************************************************************************************************** PP

                 HHHHHHHT--EBSCGGGGGCGC-EEEEEE.EECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTCHHHHHH CS
  Cpn60_TCP1 287 erlakatGatavssledltpeelGtakkv.eeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGatelela 384
                 +r+a+++Gat+v+++edl+++++Gt + v ++e ig+e++t+++++k++k++tillrg ++++l+eier+++dA+ v++n++ ++ + pGGGate++++
  CCD24527.1 326 NRIARVIGATIVNRVEDLKESDVGTQCGVfKVELIGDEYFTFLDDCKEPKACTILLRGGSKDILNEIERNLDDAMAVTRNVMLSPSLSPGGGATEMAVS 424
                 *************************************************************************************************** PP

                 HHHHCCCCTSXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHHHTTXTTEEEETTTTCEEECCCCTXEEEHHHHHHHHHHHHHHHHHHHCE CS
  Cpn60_TCP1 385 kklkeyaksvsgeeqlaieafakALevipktLaeNaGldpievlaklraahnkgekelgidvesgeiidlveagvvDplkvkrqalksAteaastiLri 483
                  kl+e+ak+++g +q+ ++a+a+A+e ip+tL++NaG dpi vl++lra+h++g++++gid + g+++d+v+ g+++p  +k+q++k+A e+a+++Lr+
  CCD24527.1 425 LKLAEHAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRVLSQLRAKHAQGNFTMGIDGDAGKVVDMVDYGIWEPEVIKQQSIKTAIESACLLLRV 523
                 *************************************************************************************************** PP

                 EEEEX CS
  Cpn60_TCP1 484 deiik 488
                 d+i++
  CCD24527.1 524 DDIVS 528
                 ***97 PP

>> NusA_N  NusA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   1.8e-05       0.1      12      92 ..     113     192 ..     105     207 .. 0.76
   2 ?   -1.9   0.1      0.67     4e+03      38      62 ..     257     281 ..     250     344 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
                 CS---HHHHHHHHHHHHHHHHH..CCT-SSS-EEEEE-TTT--.EEEEEEEEEESS-S-TTTEEEHHHHHCCSTT--TTBEEEE CS
      NusA_N  12 ekgiskevviealeeaLakayk..knygedenveveidretge.ikvyskktVveevedpekeIsleeakkidpkikvGdtvee 92 
                 ek+i + ++i+al++aL  a++  k++   + v+ve d+  ++ i+     + v + +++  e +l+ +k +  +  +G+t+e 
  CCD24527.1 113 EKNIHPVIIIQALKKALSDALEviKQV--SKPVDVENDEAMKKlIQASIGTKYVSHWSEKMCELALSAVKIVRVD--LGQTIEG 192
                 8********************955555..457******9987746666666667567778888999988644444..8888876 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.67
                 SSS-EEEEE-TTT--EEEEEEEEEE CS
      NusA_N  38 edenveveidretgeikvyskktVv 62 
                 +++n+e++ d++ + i  +++ +V 
  CCD24527.1 257 SQTNIEITNDEDWNRILQIEEEQVQ 281
                 4466777777766666666665554 PP

>> DUF3683  Protein of unknown function (DUF3683)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0064        38      45     104 ..      94     157 ..      67     167 .. 0.80
   2 ?    4.7   0.0    0.0052        31      14      55 ..     323     364 ..     320     408 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0064
     DUF3683  45 rllyevlGdiwvvrRnpylqddlldnkkrrkalvealehrleeiekrr.....ereekveellea 104
                   +  + Gdi+  +  pyl +  ++     +al +al++ le i++ +     e++e +++l++a
  CCD24527.1  94 TTVIILAGDIL-AQCAPYLIEKNIHPVIIIQALKKALSDALEVIKQVSkpvdvENDEAMKKLIQA 157
                 55555678986.5789****************************998878887777788888776 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0052
     DUF3683  14 sDreivirllgeeawelleeLreerrtgrsarllyevlGdiw 55 
                 sD++ + r++g+++++ +e+L+e+ +  +   +  e++Gd +
  CCD24527.1 323 SDNNRIARVIGATIVNRVEDLKESDVGTQCGVFKVELIGDEY 364
                 89999*******************999999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4038.57
//
Query:       CCD24528.1  [L=1025]
Description: hypothetical protein NDAI_0D02140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-30  104.0   2.1    1.3e-29  102.7   2.1    1.8  1  Mad3_BUB1_I     Mad3/BUB1 homology region 1
    1.4e-23   82.8   1.9    3.7e-23   81.5   1.9    1.7  1  Mad3_BUB1_II    Mad3/BUB1 homology region 2
    3.8e-18   65.8   0.0    8.3e-18   64.7   0.0    1.6  1  Pkinase         Protein kinase domain
    1.4e-05   24.5   0.0    4.1e-05   23.0   0.0    1.7  2  Pkinase_Tyr     Protein tyrosine kinase
    2.5e-05   24.4   3.8      3e-05   24.1   1.9    2.1  2  Mad3_BUB1_I_2   Putative Mad3/BUB1 like region 1 protein
  ------ inclusion threshold ------
      0.048   12.8   0.0      0.089   11.9   0.0    1.3  1  NRDE-2          NRDE-2, necessary for RNA interference
      0.053   12.8   0.0      0.098   12.0   0.0    1.3  1  Kinase-like     Kinase-like
      0.074   12.9   0.3       0.53   10.2   0.5    2.4  2  Pox_A_type_inc  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> Mad3_BUB1_I  Mad3/BUB1 homology region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   2.1   5.9e-33   1.3e-29       3     124 .]      44     173 ..      42     173 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 5.9e-33
                  HHHHHHHHHTG.....-THHHHHHHHHHHHHH-TT-T.TT-HHHHHHHHHHHTTTSGGGTT-HHHHHHHHHHHTTS.........S-HHHHHHHHHHH CS
  Mad3_BUB1_I   3 rqefeeeleea.eegdDpLelwlryikwieesypqsskesgllellerclkkfkdderYknDpRylklwlkyadlv.........eepreifkflask 90 
                  + +fe++l ++ e++dDpLel+l+y+  +++ +p+  +++ l+el+er l +++d ++Y+nDpRyl+lw ky+d++         ee  ++ k+++s 
   CCD24528.1  44 KLHFERKLLNElEDMDDPLELFLDYLGALSQLIPE--NNQFLIELIERSLLYLRDIDTYQNDPRYLQLWHKYIDFLdrqqsvdnlEEIFNVLKYMFSL 139
                  678*******99***********************..67*************************************99999988888888889***** PP

                  TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH. CS
  Mad3_BUB1_I  91 kiGtklalfYeewAellekkgrfkeAeevyelGi 124
                  +iG klalfYe ++++l + +rf eA+ ++e Gi
   CCD24528.1 140 HIGYKLALFYEYFSTYLFQVDRFIEAHYILEVGI 173
                  ********************************98 PP

>> Mad3_BUB1_II  Mad3/BUB1 homology region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   1.9   1.7e-26   3.7e-23       1      66 [.     293     359 ..     293     360 .. 0.95

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 1.7e-26
                   XXXXXXX.....XXXX-----EEE--TTS--EEESS-HHHHSTTSSS---HHHHHHHHTT-SSXXXXX CS
  Mad3_BUB1_II   1 KlpiFkD..esnskgrsdpvyklieikgkkpEkidcNfeLlYpedeeEfsieeiLAisRglykkkrnk 66 
                   KlpiF D  e++s+ ++++vyk+ie++g+kpEkidcNf LlY +++ E+ +eeiLA+sR+ y +++++
    CCD24528.1 293 KLPIFADsqEKISEVDNEKVYKIIENPGRKPEKIDCNFSLLYLDNQ-EYAVEEILAMSRNYYFTQKKE 359
                   9******999999999****************************96.***************998875 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   3.7e-21   8.3e-18       4     199 ..     710     928 ..     707     975 .. 0.81

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 3.7e-21
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHH.HHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.....HHSS- CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEik.ilkklk.hpnivrlyevfeekdelylvleyveggeladlle.....rkgsl 95 
                   +lGeG++++Vy a  ++tg+  A+K+ k  +  +     +l+ i+  l+ l+  + i++  +    +de ylvl+y+++g++ dl++      + ++
  CCD24528.1 710 RAELGEGGYATVYLAE-SATGNLRALKVEKPASVWEYY---ILKQIEdRLNGLNiLNSIINANSLHCFTDESYLVLNYANQGTILDLINyqkekFQNTV 804
                 578************9.79********86666555533...3443321345555556677777777779***************9*9998765545568 PP

                 -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTE................EEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHHHTTSCB CS
     Pkinase  96 seeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekge................lKitDFGlakelesssk...ltsfvgtseYlAPEvlkeney 174
                 +e+ + +i+ ++++ ley+H+ giiH DlKpeN +i  ++g+                + ++DFG +  l+   +   ++    t +    E+ ++++ 
  CCD24528.1 805 DESLCMFITIELIKVLEYVHEIGIIHGDLKPENCMIRfQEGHlgsynatgldgwdkkgIYLIDFGRSFDLSLFPSdtkFKADWKTDKQDCYEMQSGKSW 903
                 889**********************************986666666677777777778*********887755544448888899999999999***** PP

                 SHHHHHHHHHHHHHHHHHSS-STTT CS
     Pkinase 175 skkvDvWslGvilyelltgkppfsg 199
                 + ++D+++l+ i+  +l+g+ + + 
  CCD24528.1 904 TYEADYYGLAGIIHAMLFGSLIDPI 928
                 *******************987663 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.9   4.1e+03     198     230 ..     296     328 ..     296     333 .. 0.83
   2 !   23.0   0.0   1.8e-08   4.1e-05       5     137 ..     711     841 ..     708     871 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.9
                  HHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTS CS
  Pkinase_Tyr 198 iftlgespypglkneevleklkegkrlekpekc 230
                  if  +++ +++++ne+v++ +++  r ++  +c
   CCD24528.1 296 IFADSQEKISEVDNEKVYKIIENPGRKPEKIDC 328
                  67888999999**********999988877766 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 1.8e-08
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEES.....TTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT.. CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlk.....eeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk.. 95 
                   +lGeG +++V+ ++       +    a+K+ k     e +  ++ e+ l+ ++i+++     i++   +   +++ ++v++y+++G++l+ ++ +  
   CCD24528.1 711 AELGEGGYATVYLAESA-----TGNLRALKVEKpasvwEYYILKQIEDRLNGLNILNS-----IINANSLHCFTDESYLVLNYANQGTILDLINYQke 798
                  57888888888888777.....333334444430000123333334444444444443.....333333333346689*********77777665511 PP

                  .CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE CS
  Pkinase_Tyr  96 .ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls 137
                    +++++ +  + +++++ k +ey+++  ++H dl   N++++
   CCD24528.1 799 kFQNTVDESLCMFITIELIKVLEYVHEIGIIHGDLKPENCMIR 841
                  1444444455555678899**********************97 PP

>> Mad3_BUB1_I_2  Putative Mad3/BUB1 like region 1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   1.9   1.4e-08     3e-05       6      92 ..      96     192 ..      91     209 .. 0.85
   2 ?   -2.0   0.0       1.7   3.8e+03      18      36 ..     664     682 ..     662     731 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.4e-08
  Mad3_BUB1_I_2   6 dipyfrnnpsyiekwkel..Y.kktkd.......lkilfLmklKkIskfyyfvYlelsryFlkkgkkeaalfiLqegiknkvydkeilkeelksik 91 
                    di  ++n+p y+++w+++  +  ++++        ++l  m+  +I+   +  Y  +s y  +++    a++iL+ gik  + + + l  +l++++
     CCD24528.1  96 DIDTYQNDPRYLQLWHKYidFlDRQQSvdnleeiFNVLKYMFSLHIGYKLALFYEYFSTYLFQVDRFIEAHYILEVGIKRRARPLNRLLITLHELE 191
                    77889************966323444488999999**********************************************999888777776665 PP

  Mad3_BUB1_I_2  92 k 92 
                    +
     CCD24528.1 192 S 192
                    5 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
  Mad3_BUB1_I_2  18 ekwkelYkktkdlkilfLm 36 
                    e ++++Y+++++l++  L+
     CCD24528.1 664 ENYSTYYHYNQSLNMSSLL 682
                    6677888888887776654 PP

>> NRDE-2  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     4e-05     0.089      43     132 ..      37     137 ..      16     142 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4e-05
      NRDE-2  43 rkalaeiklsilekAleknksnpdserLllelLklgseiwdse.k.lakeWeellk.........enpnsvkLWreyldfrqsnfasfsvekvkelyek 130
                 +++l ++kl+  +k l++ ++ +d  +L l +L + s++  ++ + l +  e+ l          + p +++LW++y+df  ++ +  ++e++ ++++ 
  CCD24528.1  37 QQELNDVKLHFERKLLNELEDMDDPLELFLDYLGALSQLIPENnQfLIELIERSLLylrdidtyqNDPRYLQLWHKYIDFLDRQQSVDNLEEIFNVLKY 135
                 5679999***********9999999*********9999944442336677776666778888886788****************999999999888776 PP

      NRDE-2 131 cl 132
                 ++
  CCD24528.1 136 MF 137
                 65 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.4e-05     0.098     126     177 ..     788     840 ..     766     852 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.4e-05
  Kinase-like 126 ilnkvlqkrset.hkkletiarlllTlqlirlaanLqakglvhgkftvdnlll 177
                  ++ ++++ ++e+ ++   +     +T++li++  + ++ g++hg+++++n + 
   CCD24528.1 788 TILDLINYQKEKfQNTVDESLCMFITIELIKVLEYVHEIGIIHGDLKPENCMI 840
                  5666777666664444444455789************************9876 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.5   5.7e+03       1      14 [.     688     701 ..     688     702 .. 0.85
   2 ?   10.2   0.5   0.00024      0.53       4      19 ..     990    1005 ..     990    1008 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.5
  Pox_A_type_inc   1 rEmsrlRsRIsDLE 14 
                     ++m++ ++ I+D +
      CCD24528.1 688 ESMNENKNPIVDFK 701
                     68******9*9976 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00024
  Pox_A_type_inc    4 srlRsRIsDLErqLse 19  
                      ++lRs I DLE++Ls+
      CCD24528.1  990 DQLRSIILDLESELSI 1005
                      79************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1025 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1216  (0.0678231); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.75u 0.26s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 7018.82
//
Query:       CCD24529.1  [L=460]
Description: hypothetical protein NDAI_0D02150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-46  158.3   0.9    1.3e-46  158.3   0.9    2.6  3  Glyco_hydro_16  Glycosyl hydrolases family 16


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.3   0.9   7.5e-51   1.3e-46       3     176 ..      53     220 ..      51     221 .. 0.96
   2 ?   -4.9  10.3      0.92   1.7e+04      11      66 ..     280     339 ..     270     349 .. 0.64
   3 ?   -2.1   0.2      0.13   2.3e+03      38      38 ..     390     390 ..     349     433 .. 0.58

  Alignments for each domain:
  == domain 1  score: 158.3 bits;  conditional E-value: 7.5e-51
                     TTB-SEE-GGGEEEETTSEEEEEEEEEE.EEEEEECCEESSEEEEEEEE---STTEEEEEEEETGGTSTTEEEEEEEETT-TTEEEEEEEBTTBS CS
  Glyco_hydro_16   3 eefevtwsksavsvengetltltldkes.gsrikskksflyGkvearikaaksaGvvtafylssedekahdEiDiEflGndtgkvqtnvygkGkg 96 
                     + f+ +++ +++++ ++ ++tlt++k+  ++++ks+++++yG++e+ +kaa ++G++++++l+s   ++ dEiDiE++G dt++vq+n+++kG+ 
      CCD24529.1  53 KWFSSINNPGKITYGDD-GVTLTIEKQLdNPSLKSNFYIMYGRLEVVAKAAPGTGIISSVFLQS---DDLDEIDIEWVGGDTTQVQSNYFSKGNV 143
                     567889999*****999.********999**********************************9...99************************** PP

                     GE..EEEEETSS-TTTS-EEEEEEEETTEEEEEETTEEEEEEESSHHHHT.--EESEEEEEEEEEEBSHHHSSE-EEEEEEE CS
  Glyco_hydro_16  97 kr..ekrlslwfdptedfHtYaieWtpdkikfyVDgkpvrtltkkeaeevkyPqftpmkvavslwpgsdwateqgkvkidwa 176
                     ++  +  ++ ++ p++++HtYa++Wt++++++yVDg++vr+l ++++e  +yP  tpm v +++w+g+d +++ g  +i+wa
      CCD24529.1 144 ETydRGAFHPVSSPQTEYHTYAVDWTQEQLTWYVDGVAVRVLPNTSSE--GYPE-TPMYVSIGVWAGGDPSNAPG--TIEWA 220
                     *8788889999**********************************987..8***.********************..****8 PP

  == domain 2  score: -4.9 bits;  conditional E-value: 0.92
                     GGGEEEETTSEEEEEEEE..EE.EEEEEECCEESSEEEEEEEE.---STTEEEEEEEETG CS
  Glyco_hydro_16  11 ksavsvengetltltldk..es.gsrikskksflyGkvearik.aaksaGvvtafylsse 66 
                     +++ + +++++++ ++++  ++ +s+ +s++s++++  + +i  ++ks+ + ++f l s+
      CCD24529.1 280 GQNTESTSSTSASTSTSSsfSTaASTTSSSSSIHFSSSSSSITsTSKSTSTLSSFTLKSS 339
                     44444443322222222244333777777999******9999999999999****99542 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.13
                     C CS
  Glyco_hydro_16  38 k 38 
                     k
      CCD24529.1 390 K 390
                     1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2048  (0.114228); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                       144  (0.00803168); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.92u 0.37s 00:00:01.29 Elapsed: 00:00:00.49
# Mc/sec: 2796.45
//
Query:       CCD24530.1  [L=587]
Description: hypothetical protein NDAI_0D02160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-138  462.6  33.8   1.7e-138  462.2  33.8    1.0  1  AA_permease    Amino acid permease
    2.2e-39  135.5  36.1    2.6e-39  135.3  36.1    1.0  1  AA_permease_2  Amino acid permease
     0.0036   16.5   0.0      0.018   14.3   0.0    2.1  2  CobD_Cbib      CobD/Cbib protein
  ------ inclusion threshold ------
       0.79    9.8  10.0          1    9.4   0.2    3.1  3  DUF2269        Predicted integral membrane protein (DUF2269)


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  462.2  33.8  3.7e-142  1.7e-138       1     473 [.      78     539 ..      78     543 .. 0.98

  Alignments for each domain:
  == domain 1  score: 462.2 bits;  conditional E-value: 3.7e-142
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+l  a+gg+iG+glfv +g +l+++Gp+++++ ++++ +++f v+++lge+a ++p++ggf++y++rf++p++Gf++++nyl +w++ l+lel+aas
   CCD24530.1  78 HLLTLAVGGAIGVGLFVNSGAALASGGPASLVIDWVIISTCLFTVINALGEMAAAFPVVGGFNVYITRFVDPSVGFAVNINYLAQWLVLLPLELVAAS 175
                  88999********************************************************************************************* PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                  ++i++w  ++ ++  ++++a+f++v+ + n++ vk +ge+ef+l+++ki+aii+f i+gi+l++gg+p+ g+ g+++++++gs    ++++     ++
   CCD24530.1 176 MTIKYW--NDTIN-SDAWVAIFYAVIAFANMLEVKSFGETEFVLSMVKILAIIGFTILGIVLSCGGGPQGGYlGGKYWHNPGS----FVGHT----SG 262
                  ******..88888.*********************************************************************....44444....55 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa...aspfvifikesgvsvlap 290
                    fk+ +svfv+++f+++Gie++a+ a+E+kdP+++iPka ++++++it +Y+ +l lig lvp++ + ll++s s+   +sp+vi+i++ g+++l++
   CCD24530.1 263 TKFKGLCSVFVTAAFSYSGIEMTAVSAAESKDPRRTIPKAAKRTFWLITASYITILTLIGCLVPYDEPRLLSGSSSVdaaSSPLVIAIENGGIKGLPS 360
                  55**********************************************************************9999999******************* PP

  AA_permease 291 linaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsyl 388
                  l+na+il++++s+ans++y++sR + ++a+ g +P vlk ++k+g+P++ail++++++ll++++as + a  +vf++l+a+s+l+++++w++i++s++
   CCD24530.1 361 LMNAIILISIISVANSAVYACSRCMVAMAHIGNLPQVLKHIDKKGRPVNAILFTLFFGLLSFVAASDKQA--EVFTWLSALSGLSTIFCWMAINISHI 456
                  **********************************************************************..************************** PP

  AA_permease 389 rfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                  rfR+a+k+q++s++el++ ++++++g+++++++l ++l++ +++ ++++++++   +a+sf++ yl+++++++++vg+kl +++k
   CCD24530.1 457 RFRQAMKKQRKSLDELPYLSQTGVWGSWYGVIVLFLVLIVSFWTSLFPLGGSG--ADAESFFQGYLSFPILIACYVGHKLVYRKK 539
                  ************************************************88888..56**********************999875 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3  36.1   5.8e-43   2.6e-39       1     418 [.      74     517 ..      74     528 .. 0.84

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 5.8e-43
  AA_permease_2   1 lsllsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlas 94 
                    ls + ++ l++g +ig+g fv +  ++asggpa++++ w+++  ++++v+ ++ E+++a+p  gG  vy  ++  + v+f + + ++ ++++ l++
     CCD24530.1  74 LSIRHLLTLAVGGAIGVGLFVNSgaALASGGPASLVIDWVIISTCLFTVINALGEMAAAFPVVGGFNVYITRFVDPSVGFAVNINYLAQWLVLLPL 169
                    567788899************99999999****88877766666669*********999******************************9999999 PP

  AA_permease_2  95 ilsvaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl...stetdt...ffp 184
                     l++a  ++ + ++ +++ + w      +++++++a+ n + +k  +   ++l  +ki l +i + ilg+++ +ggg +        +++   f++
     CCD24530.1 170 ELVAASMTIKY-WNDTINSDAWV-----AIFYAVIAFANMLEVKSFGETEFVLSMVKI-LAIIGFTILGIVLSCGGGPQGGylgGKYWHNpgsFVG 258
                    88777766666.67666666544.....4569**************************.69999999********999988888445554444666 PP

  AA_permease_2 185 n..gwpg..vllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsv......aalffeavg 268
                    +  g ++    +++ ++++s++G+e+ a+ + e k   +++pka+   + +++ +y+ +  ++   vp de   ls++ sv      + +  e+ g
     CCD24530.1 259 HtsGTKFkgLCSVFVTAAFSYSGIEMTAVSAAESKDprRTIPKAAKRTFWLITASYITILTLIGCLVPYDEPRLLSGSSSVdaasspLVIAIENGG 354
                    6334444435889999*****************6655489*******************9999999999**9666665555555444888888877 PP

  AA_permease_2 269 gkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas..saaynfllsvsslgliisy 362
                     k + ++++++i +s++  +n+av+++sr + a+a  g lP ++++++k+g+p++ai +t+ + l+ +  +++++  ++ +++l+++s l+ i+++
     CCD24530.1 355 IKGLPSLMNAIILISIISVANSAVYACSRCMVAMAHIGNLPQVLKHIDKKGRPVNAILFTLFFGLLSF--VAASDkqAEVFTWLSALSGLSTIFCW 448
                    78999***********************************************************6665..4455688******************* PP

  AA_permease_2 363 llliigalilrkkrphlkr.............pgkilvaiigalfllfllvalffppkgpatqssliyt 418
                    +++ i+ +  r  ++++++             +g +  +i+ +l+l++ + +  fp+ g+ +  +++++
     CCD24530.1 449 MAINISHIRFRQAMKKQRKsldelpylsqtgvWGSWYGVIVLFLVLIVSFWTSLFPLGGSGADAESFFQ 517
                    ***********9999987789999889988888888777777777777777777998887766666655 PP

>> CobD_Cbib  CobD/Cbib protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.27   1.2e+03      43      88 ..     408     454 ..     378     477 .. 0.47
   2 !   14.3   0.0   3.9e-06     0.018      42     131 ..     483     576 ..     447     578 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.27
   CobD_Cbib  43 laGvllalllvllallvallllllalaall..glvlealllkltlalr 88 
                 ++ +l++l++ ll++++a   ++  + ++l     l+++++++++ + 
  CCD24530.1 408 VNAILFTLFFGLLSFVAASDKQA-EVFTWLsaLSGLSTIFCWMAINIS 454
                 33333333333333332221111.111122221235555555555443 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3.9e-06
   CobD_Cbib  42 rlaGvllalllvllallvalllllla..laall....glvlealllkltlalrsLleevrkvakalk.gdleaaReavsmiVgRdtseldeeeiarA 131
                  ++Gv++++l+++++++++l+ l  +      +    +  l+  +l ++  ++ L    +++  al+  d++++R++v   ++R+  + ++e++a++
  CCD24530.1 483 SWYGVIVLFLVLIVSFWTSLFPLGGSgaD---AesffQGYLSFPILIACYVGHKLVYRKKQIVVALEdMDIDTGRRQVDLTIRRQEMKEEQEHLAKS 576
                 23555555555555555444444433321...1333434788888999999999999999999***648****************999999999876 PP

>> DUF2269  Predicted integral membrane protein (DUF2269)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   0.00023         1      58      92 ..      92     126 ..      62     137 .. 0.85
   2 ?   -2.7   0.1       1.3   5.6e+03      24      61 ..     285     320 ..     271     325 .. 0.49
   3 ?    4.9   1.6    0.0057        25      60     142 ..     415     495 ..     385     500 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00023
     DUF2269  58 llpvtGlwlvhlagwplkqsWlllslvLyllagal 92 
                 l + +G +l+   +++l  +W+++s++L++++ al
  CCD24530.1  92 LFVNSGAALASGGPASLVIDWVIISTCLFTVINAL 126
                 45669*************************98776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
     DUF2269  24 yllrasrtrdaav.iaevarlvvladwlftatavillpv 61 
                  ++ a  ++d++  i ++a+   ++ wl+ta  +++l +
  CCD24530.1 285 TAVSAAESKDPRRtIPKAAK---RTFWLITASYITILTL 320
                 44555555555430222222...2334444444444444 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0057
     DUF2269  60 pvtGlwlvhlagwplkqsWlllslvLyllagalwlpVvwlqirlrrlaeaaeeegaalpeeyvrlfriwf.algvlaflaliai 142
                 ++ Gl+  + a  +  + + +ls +  l ++++w+++ +  ir r++ ++  ++ ++lp  y++ + +w  ++gv+ ++ l++i
  CCD24530.1 415 LFFGLLSFVAASDKQAEVFTWLSALSGLSTIFCWMAINISHIRFRQAMKKQRKSLDELP--YLSQTGVWGsWYGVIVLF-LVLI 495
                 5556666666666666777777888888999****************999888888666..555666665144444433.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3995.34
//
Query:       CCD24531.1  [L=332]
Description: hypothetical protein NDAI_0D02170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-72  241.0   0.0    6.4e-72  240.3   0.0    1.3  1  Gp_dh_C   Glyceraldehyde 3-phosphate dehydrogenase, C-termina
    5.5e-38  129.4   0.0    1.3e-37  128.1   0.0    1.7  1  Gp_dh_N   Glyceraldehyde 3-phosphate dehydrogenase, NAD bindi
  ------ inclusion threshold ------
        0.1   12.7   0.4       0.39   10.8   0.4    2.2  1  DapB_N    Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> Gp_dh_C  Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.3   0.0   1.1e-75   6.4e-72       1     158 []     155     312 ..     155     312 .. 1.00

  Alignments for each domain:
  == domain 1  score: 240.3 bits;  conditional E-value: 1.1e-75
                 HHHHHHHHHHHHEEEEEEEEEEEECTTTSBSSSS--.SSTTTTSBTTCSSEEEE-THHHHHHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSTS-H CS
     Gp_dh_C   1 LaplakvlndkfgikkglmttvhaytndQkllDgpskkdlrraraaaeniiptstgaakavglVlpelkgkldglAvrVPtpnvsvvdlvvelekevtv 99 
                 Laplakv+nd+fgi++glmttvh+ t++Qk++Dgps+kd+r +r+a+ niip+stgaakavg+Vlpel+gkl+g+A+rVPt++vsvvdl+v+l+ke+t+
  CCD24531.1 155 LAPLAKVINDAFGIEEGLMTTVHSQTATQKTVDGPSHKDWRGGRTASANIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTY 253
                 8************************************************************************************************** PP

                 HHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGCEEETTTEEEEEEEE CS
     Gp_dh_C 100 eevnaalkeaaegalkgilsyteeelvssDlvgdphssifdaketivveenlvkvvawy 158
                 +e+++++kea+eg++ gil+yte+ +vssD+ gd +ssifda ++i+++ ++vk+v+wy
  CCD24531.1 254 DEIKKVIKEASEGKMAGILGYTEDAVVSSDFLGDARSSIFDAAAGIQLSPKFVKLVSWY 312
                 **********************************************************9 PP

>> Gp_dh_N  Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   0.0   2.2e-41   1.3e-37       2     100 ..       3     102 ..       2     103 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 2.2e-41
                 EEEEESTSHHHHHHHHHHHHHTTCEEEEEE-.TS-HHHHHHHHHEETTTEC-SS-EEEETTEEEETTEEEEEE--SSGGGS-CHHHTSSEEEE-SSS-- CS
     Gp_dh_N   2 kvainGfGRIGrlvlralleekelevvaind.ltdletlayllkyDsvhgrfkgeveaeeealvvngkkikvlaekdpeelpwkelgvdlVvestGvft 99 
                 +vainGfGRIGrlvlr+++++k++ev+aind +++++++ay++kyDs+hgr+ gev++++++++++g ki++++e+dp++lpw++l+vd+ ++stGvf+
  CCD24531.1   3 SVAINGFGRIGRLVLRVAMARKNVEVLAINDpFITNDYAAYMFKYDSTHGRYAGEVTHDDKHIIIDGVKIATFQERDPANLPWASLKVDIAIDSTGVFK 101
                 79*****************************99*****************************************************************8 PP

                 S CS
     Gp_dh_N 100 d 100
                 +
  CCD24531.1 102 E 102
                 6 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   6.5e-05      0.39       2      33 ..       3      33 ..       2     126 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 6.5e-05
                EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEE CS
      DapB_N  2 kvavvGasGrmGkevvkaveeaedlelvaavd 33
                +va++G+ Gr+G+ v++++ +++++e+ a  d
  CCD24531.1  3 SVAINGF-GRIGRLVLRVAMARKNVEVLAIND 33
                79*****.******************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2552.69
//
Query:       CCD24532.1  [L=407]
Description: hypothetical protein NDAI_0D02180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-21   75.7   0.5    4.8e-21   74.4   0.5    1.8  1  Biotin_lipoyl    Biotin-requiring enzyme
    8.7e-06   26.0   0.0    2.1e-05   24.7   0.0    1.7  1  E3_binding       e3 binding domain
     0.0052   16.6   1.3       0.57   10.1   0.0    3.4  3  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
       0.47   10.9   2.8        0.7   10.3   0.1    2.4  2  SRP9-21          Signal recognition particle 9 kDa protein (S


Domain annotation for each model (and alignments):
>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.5   1.1e-24   4.8e-21       2      73 .]      31     104 ..      30     104 .. 0.97

  Alignments for each domain:
  == domain 1  score: 74.4 bits;  conditional E-value: 1.1e-24
                    EEEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEE.E-TTCEEEEE CS
  Biotin_lipoyl   2 eiksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdt.vevgdllaki 73 
                    ++ +P++++++e+g +++++ k+Gd+ +ag+vl+eve++K+++++ea+++G++++i +++G++ v+vg+++a +
     CCD24532.1  31 KFGMPAMSPTMEKGgIISWKFKEGDSFSAGDVLLEVETDKAQIDVEAQDDGKLAKIIANDGTKdVNVGEVIAYL 104
                    689********************************************************************976 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   4.8e-09   2.1e-05       5      36 .]     174     209 ..     171     209 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 4.8e-09
                 HHHHHHHHHCT--TTTS....---CTTTBE-HHHHC CS
  E3_binding   5 PaaRklAkelGidLsdv....kGtGpgGRItkeDVl 36 
                 P+++ l ++++i  +dv    k++G++G I+k+DVl
  CCD24532.1 174 PSVSLLMAQNNIQVEDVlgkiKPSGRNGTILKGDVL 209
                 9***********66655221168************7 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00013      0.57      11      39 ..      44      72 ..      37      78 .. 0.84
   2 ?    3.1   0.5     0.019        86       4      35 ..      74     106 ..      71     112 .. 0.82
   3 ?   -0.2   0.0       0.2   8.8e+02      26      33 ..     205     212 ..     200     216 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
  Biotin_lipoyl_2 11 GrVaqlnVkdGqrVkaGdvLaelDsralq 39
                     G + ++  k+G+   aGdvL+e ++++ q
       CCD24532.1 44 GGIISWKFKEGDSFSAGDVLLEVETDKAQ 72
                     5577899***************9998766 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.019
  Biotin_lipoyl_2   4 sIaapvsGrVaqlnVkdG.qrVkaGdvLaelDs 35 
                       + a+ +G++a++   dG + V+ G v+a l  
       CCD24532.1  74 DVEAQDDGKLAKIIANDGtKDVNVGEVIAYLAE 106
                      567777999999999999557********9965 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.2
  Biotin_lipoyl_2  26 aGdvLael 33 
                      +GdvLa l
       CCD24532.1 205 KGDVLAYL 212
                      9*****88 PP

>> SRP9-21  Signal recognition particle 9 kDa protein (SRP9)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.4      0.35   1.6e+03      36      37 ..     149     150 ..     119     184 .. 0.56
   2 ?   10.3   0.1   0.00016       0.7      11      42 ..     315     346 ..     307     372 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.35
     SRP9-21  36 kk 37 
                 +k
  CCD24532.1 149 EK 150
                 11 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00016
     SRP9-21  11 sslLlearPsttrittkYsikakkkkkkkkkk 42 
                  ++L++ +P++ r+t+ Y++++ +k++k+k++
  CCD24532.1 315 FEDLIKVEPKNIRFTVDYKLSPLEKESKSKRQ 346
                 578******************44444333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1711  (0.095432); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 2885.51
//
Query:       CCD24533.1  [L=583]
Description: hypothetical protein NDAI_0D02190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-21   75.9   0.0    8.4e-12   45.2   0.0    2.3  2  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
    5.2e-12   45.9   0.0    3.1e-11   43.4   0.0    2.2  2  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom


Domain annotation for each model (and alignments):
>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   1.3e-10   1.2e-06       1      92 [.       7     107 ..       7     119 .. 0.78
   2 !   45.2   0.0   9.3e-16   8.4e-12      98     242 ..     136     289 ..     134     291 .. 0.93

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 1.3e-10
                 EEEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SST......T--EE-HHH....HHHHHHHHHHHHHHHCT.-GCCEEEEEEEE-SS-EEEEETTT CS
      FGGY_N   1 lilglDcGttstkaivldekgkvvasaqaelelsspke......gwaeqdpee....iwqalaeairkvleqagisekqikaIgisgqreglvllDknd 89 
                 ++lg+D++t+++k ++++++ k+++s+++e+e + p+         +e +++     +++a+  +  k ++  g++  ++kaI+ s+q++g v +  + 
  CCD24533.1   7 YYLGFDLSTQQLKCLAINQDLKIIHSETVEFEKELPHYntkkgvYLHEDEVASpvfmWLEAIDLVFMKYVNS-GFNLGKVKAISGSAQQHGSVYWTTEA 104
                 89********************************99986666554466665542222555555555555554.6********************98776 PP

                 EES CS
      FGGY_N  90 kpL 92 
                   L
  CCD24533.1 105 DFL 107
                 555 PP

  == domain 2  score: 45.2 bits;  conditional E-value: 9.3e-16
                 TT--TTHHHHHHHHH.TTCHCCHHHHHSS-SSTTSHHHHHHHHHHHSCCHHCCHCEEEEHHHHHHHHHCT--E.EEHHHHCTTTSEETTTTEE-HHHHH CS
      FGGY_N  98 wkdrrtaeiveklke.egnekklyektglvlstgftlsklkWlkenepevfekiekflliddyLiwrLtgqfv.tdvtnasesmlfnikklewdeella 194
                 w+d+ t +++++ ++  g++k+l++ tg+ ++  ft+  +  +   +pe +e+++++ l++++L   L g+ v  ++ +a +++l++ik+ ++de  l 
  CCD24533.1 136 WQDHSTGSQCTEFEKkVGGPKQLASLTGSKAHYRFTGPQIMKFVGKNPEGYERTKTISLVSNFLSSILCGKLVpLEEADACGMNLYDIKEHKFDEGCLS 234
                 ***************8899***************************************************98847************************ PP

                 HTT--GG......GS-EEE-TCCEE.EEEECCCCCCTT.S-EEEEEEEEEHHHHH CS
      FGGY_N 195 ilgipee......lLPklvesseii.gelkpelaaklGlkegvpvvggggDqqaa 242
                 +++ + +      + P+ + ++ i+ g++ ++  +k G++ +  + +++gD+ a+
  CCD24533.1 235 LIDKDTNnirrklMDPPTRCPEPIClGNISQYFVKKYGFQSNCSIYPITGDNLAT 289
                 *9988777777655588888888866**************************887 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.16   1.4e+03      89     110 ..     122     143 ..      87     153 .. 0.79
   2 !   43.4   0.0   3.5e-15   3.1e-11       3     197 ..     302     530 ..     300     531 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.16
      FGGY_C  89 vvfvpafsglrapywdpdargt 110
                 v+   afs + +p+w +++ g+
  CCD24533.1 122 VLAPNAFSWELSPNWQDHSTGS 143
                 5566899********9999885 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 3.5e-15
      FGGY_C   3 vslGTssflllvgtkpv..isehglltpvagedgkpeyalegsiavagslvawlldnlglreeirdagev.eeslaelaaaeavada............ 86 
                 vslGTs+++llv++++   ++ h + +p+       + ++ + ++++gsl    +++  +r+e+++++    +s++++++a ++ d             
  CCD24533.1 302 VSLGTSTTVLLVTDHYNpsPNYHLFIHPTI-----ANNFMGMICYCNGSL---AREE--IRDELNKSAGLtNSSWDLFDKAVLADDIhtdnelglyfpl 390
                 89*********99999888***********.....99*************...4444..6666766666688888888887766666677776555543 PP

      FGGY_C  87 ggvvfvpafsglrapywdpdargtitglssstt.lahiarAaleavalqlrailealekd............................sgkpldrlavd 156
                 g++v  +  +  r   +dp+++  i  +  +++   h a  ++e++al+ r ++  l ++                             +k ++r + +
  CCD24533.1 391 GEIVPSTKATYKRIE-LDPKTKL-ISKIVPKFQdIRHDAKNIVESQALSCRIRIYPLLSSdaehsretsdnihtkvkfdgselplseyLNKRPNRAFFV 487
                 444444444444433.5777777.4555444445*****************99999955557777888889999999999999999889999******* PP

      FGGY_C 157 GGgskndllmqllAdilg..vpVerpktaeatalGaAilAava 197
                 GG+sknd +++ +A+++g     +r++t +++alG   +A ++
  CCD24533.1 488 GGASKNDSIVRKFAQVIGakEANYRLDTPNSCALGGCFKAIWS 530
                 ******************985569***********99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 4691.57
//
Query:       CCD24534.1  [L=891]
Description: hypothetical protein NDAI_0D02200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1047  (0.058397); expected 358.6 (0.02)
Passed bias filter:                      232  (0.0129399); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.40
# Mc/sec: 6629.47
//
Query:       CCD24535.1  [L=535]
Description: hypothetical protein NDAI_0D02210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-128  428.6  24.8   2.3e-128  428.4  24.8    1.1  1  DUF3533   Protein of unknown function (DUF3533)
  ------ inclusion threshold ------
       0.26   11.2   0.1       0.26   11.2   0.1    3.0  2  PDR_CDR   CDR ABC transporter


Domain annotation for each model (and alignments):
>> DUF3533  Protein of unknown function (DUF3533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.4  24.8  2.5e-132  2.3e-128       2     377 ..     113     508 ..     112     509 .. 0.95

  Alignments for each domain:
  == domain 1  score: 428.4 bits;  conditional E-value: 2.5e-132
     DUF3533   2 vlllavlilailslywGalyrrsdrlknlnvlvVneDeg...gseltpvvgeavaqainettssslgtwtvvnpsefke.........seeeveelvhk 88 
                  l+lav++++il +ywGa yr+ +++++ln+++V+++++   +++ +p++   + ++i +++    g+w+++n+s f++         +++++++lvh+
  CCD24535.1 113 NLFLAVVCFSILPIYWGATYRTASNYHKLNIIAVIQEDQlnnNNTAIPLMTTVFPTLIHSVP----GNWHIYNQSHFQQkfnvqdpsqINAKINHLVHE 207
                 589************************************98888888999999999999999....99******************************* PP

     DUF3533  89 ekywgaivvkenateklyaalsangassynstelleliyesgRdattvssyilpaltqleaaalakygsqllqqliqslsntaqaaqlsna........ 179
                 e+yw +++vk+n+t++l ++l +++++s+nst+ +e+ yes+Rd+ ++++yilp ++++e+ ++++y +++l++l+++l n +++  + na        
  CCD24535.1 208 EHYWISLNVKANVTAALIDSLLNSTSPSFNSTNFFEVAYESARDPANLKAYILPLAQEVETLYRNYYNEEYLPTLLSTLLNATNNGDN-NAtsiatqfn 305
                 *********************99999***************************************99999999887776665544442.2235677899 PP

     DUF3533 180 ....llaspiafnsidlrPftdgvalaplqvgliyliiltffqfaflgklhaemglsrklkfkqllvyrllisvvslfvlSlffslvslafqvdftvaf 274
                     + + ++ f+++dl  f+++ ++aplqvgliy+iilt+fq++++g+lhaem  ++ l++k+++vyr+lis+ ++f+lSlff+++s++fqvdft+af
  CCD24535.1 306 sknwANSGKMLFQYNDLVSFDNRLLMAPLQVGLIYCIILTVFQLSLFGPLHAEM--AKVLRPKHMIVYRILISWCTYFFLSLFFCTISAMFQVDFTRAF 402
                 999999************************************************..9****************************************** PP

     DUF3533 275 GragFvvyWmitwlvmaavglanenvasil...gppylpvwllfwvilNvsstfvPlelspgFYrygyalPlhniveilrvIffdtakgqlgrnlgiLl 370
                 G++gFvvyWm+t+l+m+a+g+anenv+s++   +p+yl++wl++w+i+N+s+tf+P++l + FYrygy +P+hn+++i++v++++++k ++grn+giL+
  CCD24535.1 403 GKGGFVVYWMTTFLTMMALGGANENVLSLVlifFPQYLSLWLITWIITNISVTFYPMALTSYFYRYGYMMPIHNAFDIYKVVLLNVSKRKMGRNYGILV 501
                 ****************************99999****************************************************************** PP

     DUF3533 371 awvvvnt 377
                 awvv+nt
  CCD24535.1 502 AWVVINT 508
                 *****98 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.4   4.8         2   1.8e+04      58      63 ..     385     390 ..     367     422 .. 0.54
   2 ?   11.2   0.1   2.9e-05      0.26      39      77 ..     486     524 ..     479     533 .. 0.85

  Alignments for each domain:
  == domain 1  score: -5.4 bits;  conditional E-value: 2
     PDR_CDR  58 ifflal 63 
                 +ff+++
  CCD24535.1 385 LFFCTI 390
                 223333 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 2.9e-05
     PDR_CDR  39 fgyssshlwrnfgiliaflifflalyllatelisaeksk 77 
                 ++ s+ ++ rn+gil+a++++ +al  ++++++ ++ +k
  CCD24535.1 486 LNVSKRKMGRNYGILVAWVVINTALFPFVSKIVGWKIKK 524
                 567888999*****************9999999988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1049  (0.0585086); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3757.15
//
Query:       CCD24536.1  [L=827]
Description: hypothetical protein NDAI_0D02220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00015   21.9   1.4        1.1    9.8   0.0    4.5  3  TPR_17    Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.32   11.6  10.0        1.1    9.9   1.0    4.2  4  RPAP3_C   Potential Monad-binding region of RPAP3
        1.2    9.6  10.2        6.4    7.3   0.1    4.9  5  TPR_8     Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.028   1.6e+02      15      29 ..      94     108 ..      92     123 .. 0.81
   2 !    4.5   0.1    0.0092        55      17      34 .]     479     496 ..     473     496 .. 0.92
   3 !    9.8   0.0   0.00019       1.1       5      29 ..     502     526 ..     500     555 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.028
      TPR_17  15 aynnLAelllknGdl 29 
                 +yn+LA l++++ ++
  CCD24536.1  94 VYNLLAILYYHKSQS 108
                 8********966654 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0092
      TPR_17  17 nnLAelllknGdlmtArq 34 
                 +n+A++l+++++ ++++q
  CCD24536.1 479 FNYAYVLSQQNKIDQCIQ 496
                 8**************997 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00019
      TPR_17   5 aleldPnnadaynnLAelllknGdl 29 
                  le +P +++a+++LA +++   d+
  CCD24536.1 502 ILEFYPFHFKAWHLLALCYSTEEDK 526
                 699****************965554 PP

>> RPAP3_C  Potential Monad-binding region of RPAP3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.01        61      31      78 ..     135     222 ..     110     238 .. 0.69
   2 ?   -1.8   0.1      0.81   4.8e+03      49      83 ..     334     377 ..     323     381 .. 0.59
   3 ?    9.9   1.0   0.00018       1.1      19      91 ..     435     500 ..     428     501 .. 0.68
   4 ?   -0.2   0.3      0.25   1.5e+03      22      62 ..     570     611 ..     552     636 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.01
     RPAP3_C  31 p.......................................kqlpkiFknsledeilsdildalnerlqeekaeds.slvleiLdrLsk 78 
                 +                                       +++ +iF+n++ ++ ++ i+d++   +q  + +++    ++iL++L+ 
  CCD24536.1 135 KrkfssiydefikllklenlyyqgkllhgstvkdrhtfyyENILRIFNNNIPTNSMGLIFDYILLIIQDLRINKTiVEPVQILKNLKS 222
                 044444444444444455566666677777777777777789999****************999998887655445566777777765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.81
     RPAP3_C  49 dildalnerlqeekaeds.........slvleiLdrLskvkRFd 83 
                  +++++++ +++++ +++         s  l iL++ +kv+  d
  CCD24536.1 334 NFMNVVKYTKKQSELNNNqltdplsliSSYLFILQNTTKVDNID 377
                 45555555555554444457778866666666666666666655 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00018
     RPAP3_C  19 dkdlkavllqinpkqlpkiFknsledeilsdild.....alnerlqeekaedsslvleiLdrLskvkRFdmlvmflsd 91 
                 +k ++  l qi++++l k+++n+l++++++ +                   +++l +++   Ls+ ++ d +++fl++
  CCD24536.1 435 SKTWQT-LYQIQSTDLSKLLSNELSSHLINAMNLqtsttN-----------KMDLKFNYAYVLSQQNKIDQCIQFLEN 500
                 455555.9*****************988888743233220...........344566677777777777777766654 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.25
     RPAP3_C  22 lka.vllqinpkqlpkiFknsledeilsdildalnerlqeek 62 
                 ++  +l +++ +  ++iF+++   ++++++++ +ne ++ ++
  CCD24536.1 570 WQFiQLKMTQITLVEEIFGALDALDMIEELFTSFNELFNDST 611
                 333455557888889999999999999999999999988864 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.9   1.1e+04       7      29 ..      98     108 ..      94     112 .. 0.48
   2 ?   -3.5   0.1         3   1.8e+04      18      27 ..     120     129 ..     117     131 .. 0.76
   3 ?    4.1   0.1     0.011        67       4      25 ..     478     499 ..     476     500 .. 0.91
   4 ?    7.3   0.1    0.0011       6.4       2      23 ..     511     532 ..     510     539 .. 0.83
   5 ?    1.4   0.0     0.078   4.7e+02       4      30 ..     634     661 ..     633     664 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.9
                 HHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekale 29 
                 l+            + yy k  +
  CCD24536.1  98 LA------------ILYYHKSQS 108
                 55............444444444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3
                 HHHHHHHHHH CS
       TPR_8  18 eeAkeyyeka 27 
                  +A++y+ k 
  CCD24536.1 120 IKAQKYLLKL 129
                 5899999986 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.011
                 HHHHHHHHHHTT-HHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyye 25 
                  +n ++++++++++++ ++++e
  CCD24536.1 478 KFNYAYVLSQQNKIDQCIQFLE 499
                 589****************998 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0011
                 CHHHHHHHHHHHTT-HHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkey 23 
                 +a+++l+++y++ +d+e++   
  CCD24536.1 511 KAWHLLALCYSTEEDKEKSYRI 532
                 79***************98665 PP

  == domain 5  score: 1.4 bits;  conditional E-value: 0.078
                 HHHHHHHHHHTT-HHH.HHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyee.Akeyyekalel 30 
                 +   ++iy+kl d+++ A +++++a+++
  CCD24536.1 634 WIFVSNIYIKLDDHKMdALAAIKEATKI 661
                 677789*******996577777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1437  (0.0801495); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 5876.23
//
Query:       CCD24537.1  [L=524]
Description: hypothetical protein NDAI_0D02230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.7e-113  377.1  16.9   1.2e-112  376.7  16.9    1.1  1  DUF3533   Protein of unknown function (DUF3533)
  ------ inclusion threshold ------
      0.014   15.3   0.0      0.014   15.3   0.0    4.0  4  PDR_CDR   CDR ABC transporter


Domain annotation for each model (and alignments):
>> DUF3533  Protein of unknown function (DUF3533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.7  16.9  1.3e-116  1.2e-112       2     377 ..     110     496 ..     109     497 .. 0.96

  Alignments for each domain:
  == domain 1  score: 376.7 bits;  conditional E-value: 1.3e-116
     DUF3533   2 vlllavlilailslywGalyrrsdrlknlnvlvVneDeg...gseltpvvgeavaqainettssslgtwtvvnpsefke.........seeeveelvhk 88 
                  +++a++++++l ++wG+ly+ +++++++n l+V++De     + ++p++g+ + q+i e++    gtw+++n++ f++         ++++v +++++
  CCD24537.1 110 NFVIALFCFTVLPIFWGSLYDSTRYFHKVNYLAVIQDEPvnvRGVTVPAMGSFIPQIIAELP----GTWHIYNTTTFQDkfgvnsageIDQKVIDEIFD 204
                 5789***********************************99888899999999999999999....99******************************* PP

     DUF3533  89 ekywgaivvkenateklyaal..sangassynstelleliyesgRdattvssyilpaltqleaaalakygsqllqqliqslsntaqaaqlsna.llasp 184
                 e+yw+ai+vk+nat++l+++   +    + +ns++ +e++yes++d t+v s+il  +++le+ +++ y s++l+ l ++l +   + + + a  +a++
  CCD24537.1 205 EHYWLAINVKANATQTLVESFlvPPPLGQVFNSSNFFEVVYESAKDITSVPSSILAPVQALETYFKQIYNSRYLPGLFSQLPSNLSDYNPE-AlSYATS 302
                 *****************998768999999**********************************************9999987544444433.359**** PP

     DUF3533 185 iafnsidlrPftdgvalaplqvgliyliiltffqfaflgklhaemglsrklkfkqllvyrllisvvslfvlSlffslvslafqvdftvafGragFvvyW 283
                 ++f + d+rPft++++ +pl  g iy + +t+fqf ++++lh +m  +  l++k++++yrl+i++ ++f+lSlf+++vs++fq+ f+ +fGr+ F+vyW
  CCD24537.1 303 MSFHYFDYRPFTPRTLYGPLLGGCIYALTITIFQFLIFTPLHIKM--AGLLSPKHIILYRLAIAWCCFFFLSLFYCTVSAIFQISFRGTFGRGKFMVYW 399
                 *********************************************..9*************************************************** PP

     DUF3533 284 mitwlvmaavglanenvasil...gppylpvwllfwvilNvsstfvPlelspgFYrygyalPlhniveilrvIffdtakgqlgrnlgiLlawvvvnt 377
                 m+twl+m+avg+anenvasi+   +ppy ++w +f+vi+N+s++f+ ++l++ F+r+gy lP+hn+ +++rvI+ d+++  +grn+giL+awvv+nt
  CCD24537.1 400 MTTWLYMLAVGGANENVASIIftfCPPYFGFWVVFFVIINMSTSFFSMALNNYFFRFGYMLPMHNALDLYRVILADLSRSHMGRNYGILVAWVVLNT 496
                 ***********************************************************************************************98 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.7      0.16   1.4e+03      46      61 ..     107     123 ..      99     132 .. 0.74
   2 ?   -1.0   1.3      0.18   1.6e+03      54      68 ..     363     377 ..     352     403 .. 0.65
   3 ?    0.7   2.8     0.056     5e+02      54      74 ..     428     448 ..     426     454 .. 0.84
   4 ?   15.3   0.0   1.6e-06     0.014      41      75 ..     476     510 ..     473     518 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.16
     PDR_CDR  46 lwrnfgi.liafliffl 61 
                 lw nf+i l++f+++ +
  CCD24537.1 107 LWINFVIaLFCFTVLPI 123
                 68999884466776655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.18
     PDR_CDR  54 iaflifflalyllat 68 
                 ia++ ff++  +++t
  CCD24537.1 363 IAWCCFFFLSLFYCT 377
                 566666655443333 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.056
     PDR_CDR  54 iaflifflalyllatelisae 74 
                 ++f+++f+++  + t+++s++
  CCD24537.1 428 FGFWVVFFVIINMSTSFFSMA 448
                 789999999999999999886 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 1.6e-06
     PDR_CDR  41 yssshlwrnfgiliaflifflalyllatelisaek 75 
                 +s+sh+ rn+gil+a++++ +al  ++++++ a+ 
  CCD24537.1 476 LSRSHMGRNYGILVAWVVLNTALFPFIMKFVGATI 510
                 689************************99997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       999  (0.0557198); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 3821.72
//
Query:       CCD24538.1  [L=748]
Description: hypothetical protein NDAI_0D02240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-89  297.7  20.1    6.4e-89  297.7  20.1    1.9  2  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
    2.9e-56  190.2  16.9    2.9e-56  190.2  16.9    2.3  2  PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltra
    2.1e-23   83.1   0.2    5.6e-23   81.7   0.3    1.6  2  MIR       MIR domain
  ------ inclusion threshold ------
        4.2    7.6  16.4        5.9    7.1   1.5    3.6  3  AzlD      Branched-chain amino acid transport protein (AzlD)


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.7  20.1   1.4e-92   6.4e-89       2     245 .]      65     308 ..      64     308 .. 0.99
   2 ?   -3.2   2.0       1.1   5.1e+03     151     222 ..     620     651 ..     600     678 .. 0.48

  Alignments for each domain:
  == domain 1  score: 297.7 bits;  conditional E-value: 1.4e-92
         PMT   2 iltllallirlwrlslpnsvvfdevhfgkfasdYlehsffmdvhpplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsallgslivplv 100
                 ++t+l+++ r+ +++ +n+vv+de+hfgkf+s+Y+ h+f++dvhpplgkml+al+ yLag+dg+f f+s+  ++yp++++  ++R+f+a++g+l+vpl+
  CCD24538.1  65 LFTILSFYLRFKNIDKNNHVVWDEAHFGKFGSYYITHEFYHDVHPPLGKMLVALSEYLAGFDGHFSFDSN--TKYPSEMNFKFMRQFNATFGALCVPLT 161
                 689*******************************************************************..89************************* PP

         PMT 101 yltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkfe..rkapfsrswwlwllltgvalglavsvKwvglftvllvgllli 197
                 ++t+++lgfs  t++l +l+v+le+s+itls++illds+Llfftl++++clvk +  rk++++r+w+lw+lltg+++g+++svKwvglf++++vg++++
  CCD24538.1 162 FFTAKNLGFSWQTTYLVTLMVTLEHSYITLSKFILLDSILLFFTLTTFACLVKIYtlRKKQLTRKWSLWMLLTGISVGCVCSVKWVGLFITIVVGIYTL 260
                 *********************************************************9***************************************** PP

         PMT 198 welwqllgdkslllksivkhllaralaliviPvtlylavftvhfwllf 245
                 ++l+ l  d+ l+ ++++kh+l+r++ li+iP+++y+++f++hf ll+
  CCD24538.1 261 MDLFSLHHDENLSRVKYYKHWLIRIIDLIIIPFLIYMFCFKIHFALLY 308
                 ********************************************9987 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
         PMT 151 lvkferkapfsrswwlwllltgvalglavsvKwvglftvllvgllliwelwqllgdkslllksi..vkhllara 222
                 +v                                          ll+ ++ +++g+++  l +   +k l+  +
  CCD24538.1 620 FV------------------------------------------LLMLRIIFKWGRQTINLTEDqiWKLLITGV 651
                 22..........................................333445555554444444333322222222 PP

>> PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   3.2      0.87   3.9e+03     154     174 ..     226     259 ..     194     308 .. 0.50
   2 !  190.2  16.9   6.5e-60   2.9e-56       1     199 []     547     744 ..     547     744 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.87
    PMT_4TMC 154 k.............klvklivvvvllvlviavFi 174
                 k              ++++  v++++++v++++ 
  CCD24538.1 226 KwslwmlltgisvgCVCSVKWVGLFITIVVGIYT 259
                 3444444444443322233333333333333333 PP

  == domain 2  score: 190.2 bits;  conditional E-value: 6.5e-60
    PMT_4TMC   1 Flkkflelqkamltsnnaltes....hpyaSepyeWplllrgisywtkneekkqiyllGNpvlwwlstiallvfvllllalllrrqrgvkdleeeetr. 94 
                 F+++f+ ++ am +sn+al+++    +p+aSep+eWp+l++g+++++++++++++yl+G+p+ +w+st++l+ fvll+l  ++++ r+  +l+e++ + 
  CCD24538.1 547 FWTDFVLINFAMASSNSALIPDqdkfDPLASEPWEWPTLHKGLRMCSWSRDSYRYYLMGSPFNTWISTLSLFGFVLLMLRIIFKWGRQTINLTEDQIWk 645
                 9********************559*****************************************************************9995555556 PP

    PMT_4TMC  95 llnsglflllgwalhylPfflmgRvlflhhYlpAllfailllaalldfllkslkkslkkkklvklivvvvllvlviavFiffspltyGlpgtseevkkl 193
                 ll++g+f+++ w++h+lPf++mgRv+++hhY+pAl+fail++++++++l+ s +       ++k+ ++++l++ +i+v+i+f+p++ Gl+g+  ++ +l
  CCD24538.1 646 LLITGVFPFFSWIMHFLPFVMMGRVTYVHHYVPALYFAILVFGFVIEQLFVSAH------PIIKYPAFIILATGCIWVYIIFAPICQGLHGPLTQYLRL 738
                 *************************************************94444......4679*********************************** PP

    PMT_4TMC 194 kwlssW 199
                 +wl+sW
  CCD24538.1 739 QWLPSW 744
                 ****** PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.6   7.2e+03      37      62 ..     307     331 ..     305     343 .. 0.79
   2 !   81.7   0.3   1.3e-26   5.6e-23      11     183 ..     354     521 ..     353     527 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.6
         MIR  37 lypsadaanssraLWeievvqkdawr 62 
                 ly+s++  +s++ L+ i ++++ + +
  CCD24538.1 307 LYKSGTGDASTNTLFQINLENT-KIE 331
                 7888888899999****99998.544 PP

  == domain 2  score: 81.7 bits;  conditional E-value: 1.3e-26
         MIR  11 LfHshqdeyltiseqqqkqevflritlypsadaanssraLWeievvqkd....awrgglikwgkvyRlkHlaTgryLaseeekksplseseddqkevsa 105
                 L Hsh + y+ +s+q+q       +t y + da+n+    We     ++    ++ ++ + +g+ +Rl H +T ++L+s++   s +s   + + evs 
  CCD24538.1 354 LLHSHVQLYPDGSKQRQ-------VTGYAHSDANNN----WEFHFADHNyspnDTIIRDVMDGMDIRLVHKNTRNNLHSHKI-PSHVS---RGNFEVSG 437
                 78***************.......************....********9888778999999********************9.77776...89****** PP

         MIR 106 ygleg.fegdnDk......veifekksttgmksaklv.prdsyvrlqHvvtgcwLhstsvklkkekfekvqqkvicakekedkeal 183
                 yg++  f ++nD+       +++++++++ ++++++  p ++ +rl+H + gc+L st  + ++++f+  q +++c+++ +++++ 
  CCD24538.1 438 YGNDDdFVDSNDIwtielvDQLDSSNPNYPKEDPTILhPVSTFFRLRHKKLGCYLASTGLTYPQWGFQ--QAEIVCKNSWSKRDKA 521
                 **965245559999964444444455566666777767******************************..*******999988875 PP

>> AzlD  Branched-chain amino acid transport protein (AzlD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2    0.0014       6.1      42      83 ..     151     192 ..     149     202 .. 0.89
   2 ?    7.1   1.5    0.0013       5.9      53      96 ..     217     261 ..     196     264 .. 0.76
   3 ?    0.7   2.8      0.13   5.9e+02      13      77 ..     657     716 ..     610     726 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0014
        AzlD  42 avLaaliapellaetgklsaslglarllaalvavlvalltrn 83 
                 a ++al++p  +++ ++l +s++  +l+ ++v++  +++t +
  CCD24538.1 151 ATFGALCVPLTFFTAKNLGFSWQTTYLVTLMVTLEHSYITLS 192
                 6789*****************************988888765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0013
        AzlD  53 laetgklsasl.glarllaalvavlvalltrnlllsilvGmavya 96 
                    +++l+ ++ ++  l+++ v+++++++   l+++i+vG+ +++
  CCD24538.1 217 TLRKKQLTRKWsLWMLLTGISVGCVCSVKWVGLFITIVVGIYTLM 261
                 3345566667757777889999999999999**********9987 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.13
        AzlD  13 yltRylplllfrrlklppwlqrllryvPiavLaaliapellaetgklsasl..glarllaalvavlv 77 
                 +++ +lp+++++r++      ++ +yvP+  +a+l++  ++ e+   sa+   + + ++ +++++++
  CCD24538.1 657 WIMHFLPFVMMGRVT------YVHHYVPALYFAILVFGFVI-EQLFVSAHPiiKYPAFIILATGCIW 716
                 555666666666554......77777777655555555444.3233333221255555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 5725.91
//
Query:       CCD24539.1  [L=795]
Description: hypothetical protein NDAI_0D02250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-32  109.0  26.7    7.3e-07   29.8   0.1   11.0 12  WD40            WD domain, G-beta repeat
    4.7e-10   39.6   4.3        1.1    9.6   0.0    7.3  8  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom
     0.0001   21.4   0.7       0.42    9.5   0.2    4.2  5  Ge1_WD40        WD40 region of Ge1, enhancer of mRNA-decappin
     0.0047   16.3   3.7       0.11   11.8   0.3    3.1  3  WD40_like       WD40-like domain
  ------ inclusion threshold ------
        2.9    7.9   4.4         40    4.3   0.0    3.6  5  PD40            WD40-like Beta Propeller Repeat
        7.2    7.1   6.9       0.36   11.2   0.3    2.1  2  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.1   2.4e-10   7.3e-07       4      38 .]      50      85 ..      48      85 .. 0.95
   2 !    8.1   0.3    0.0018       5.2       1      37 [.      91     126 ..      91     127 .. 0.67
   3 !   15.7   0.0   6.9e-06      0.02       6      37 ..     197     233 ..     192     234 .. 0.76
   4 !    8.6   0.1    0.0012       3.7       9      37 ..     281     310 ..     270     311 .. 0.79
   5 ?   -2.9   0.8       5.4   1.6e+04      15      37 ..     346     370 ..     336     371 .. 0.60
   6 !   14.0   0.0   2.4e-05      0.07       8      36 ..     386     415 ..     377     416 .. 0.82
   7 ?   -1.0   0.0       1.3     4e+03      15      37 ..     448     469 ..     430     470 .. 0.68
   8 !   18.1   0.0   1.2e-06    0.0035       6      30 ..     560     585 ..     552     589 .. 0.83
   9 !   10.2   0.0   0.00039       1.2       8      37 ..     610     640 ..     605     641 .. 0.83
  10 !   12.6   0.4   6.8e-05       0.2      21      38 .]     665     690 ..     659     690 .. 0.81
  11 ?   -2.8   0.0       4.9   1.5e+04      10      17 ..     706     714 ..     702     728 .. 0.76
  12 ?    0.6   0.0       0.4   1.2e+03       2      37 ..     747     790 ..     746     791 .. 0.55

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.4e-10
                EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                ++tl+GH  +vt+++f +  ++++s+s+D++v++W+
  CCD24539.1 50 IQTLKGHeADVTCVKFIHGTPFMISASEDHHVKVWK 85
                689****999*************************6 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0018
                 TEEEEEEESS..SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH..ssvtslafspdgawlasGsdDgtvriW 37 
                 ++c++t+  H  + + +l  +   ++++ G+ Dg+v iW
  CCD24539.1  91 WNCVQTI-QHyqNTIVAL--DVLEDLFVVGCADGNVSIW 126
                 5788887.4775556666..223333677999******* PP

  == domain 3  score: 15.7 bits;  conditional E-value: 6.9e-06
                 EEESS.SSEEEEE...EETTSSE.EEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtsla...fspdgaw.lasGsdDgtvriW 37 
                 +l+GH +++ s+a       g++ l+sGs D+ +r+W
  CCD24539.1 197 KLEGHeDWIKSMAfrhQETPGDYlLCSGSQDRYIRLW 233
                 689**888****8878444444435799********* PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0012
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriW 37 
                 GH ++++sl+++     l++++ D  +++W
  CCD24539.1 281 GHdDWISSLQWHETRLQLLASTADTALMVW 310
                 9*777****66666666887877******* PP

  == domain 5  score: -2.9 bits;  conditional E-value: 5.4
                 EEEEETTSSE..EEEEETTSEEEEE CS
        WD40  15 slafspdgaw..lasGsdDgtvriW 37 
                 +l fs++ +   +++ ++ g+ riW
  CCD24539.1 346 CLWFSSEDNVdyILTNGRTGSWRIW 370
                 4444444444445554557888888 PP

  == domain 6  score: 14.0 bits;  conditional E-value: 2.4e-05
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvri 36 
                 +G  + vt++a+ p+g++l++ s D+t r+
  CCD24539.1 386 SGPiKEVTDIAWAPNGKYLLATSLDQTTRL 415
                 577778************998899**9998 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 1.3
                 EEEEETTSSEEEEEETTSEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriW 37 
                 ++    + +++ sG+d + +r +
  CCD24539.1 448 CVEPITNTRFI-SGGDEKILRSF 469
                 55555666776.89988877755 PP

  == domain 8  score: 18.1 bits;  conditional E-value: 1.2e-06
                 EEESSSS.EEEEEEETTSSEEEEEET CS
        WD40   6 tltGHss.vtslafspdgawlasGsd 30 
                 +l GH+  +t++++spdg+++as+++
  CCD24539.1 560 KLYGHGYeITCVDVSPDGKFIASACR 585
                 577**446**************9875 PP

  == domain 9  score: 10.2 bits;  conditional E-value: 0.00039
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 + H   +t l fs+d+++l+s ++D+   +W
  CCD24539.1 610 EFHtLTITRLEFSHDNKYLLSVCRDRQWAVW 640
                 456434**************9999**99888 PP

  == domain 10  score: 12.6 bits;  conditional E-value: 6.8e-05
                 TSSE........EEEEETTSEEEEEE CS
        WD40  21 dgaw........lasGsdDgtvriWd 38 
                 dg+w        +++Gs+D+t+++W+
  CCD24539.1 665 DGDWvptefgtaFITGSRDRTIKMWN 690
                 567766666666679**********8 PP

  == domain 11  score: -2.8 bits;  conditional E-value: 4.9
                 S.SSEEEEE CS
        WD40  10 H.ssvtsla 17 
                 H ++vt+l+
  CCD24539.1 706 HtKPVTALS 714
                 878999995 PP

  == domain 12  score: 0.6 bits;  conditional E-value: 0.4
                 EEEEEEESS.SS...EEEEEEETTSSE.........EE.EEETTSEEEEE CS
        WD40   2 qclrtltGH.ss...vtslafspdgaw.........la.sGsdDgtvriW 37 
                 q+++tl+   ++   +t l      +w         l+  +s D + ri+
  CCD24539.1 747 QLVHTLEDSiTPagkITRL------RWstadmdkrmLLgVSSNDSSARIY 790
                 6677777555445669999......7733333333343213457777776 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.31   9.1e+02      35      79 ..      54     100 ..      43     111 .. 0.73
   2 ?    3.6   0.3     0.027        80      27      69 ..      88     130 ..      71     141 .. 0.69
   3 ?    0.9   0.1      0.19   5.7e+02      37      82 ..     201     250 ..     161     294 .. 0.69
   4 ?   -0.6   0.0      0.57   1.7e+03      37      62 ..     282     307 ..     274     316 .. 0.79
   5 !    8.6   0.0   0.00075       2.3      28      65 ..     368     416 ..     356     429 .. 0.76
   6 !    5.6   0.0    0.0065        20      36      61 ..     563     588 ..     548     600 .. 0.84
   7 ?    3.3   0.0     0.034     1e+02      35      64 ..     610     639 ..     591     665 .. 0.80
   8 !    9.6   0.0   0.00036       1.1       9      67 ..     725     792 ..     720     794 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.31
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesg..kvvhslsvk 79 
                  ++++  v+++++ +   ++  a +d +v++ ++ +   ++v++++  
   CCD24539.1  54 KGHEADVTCVKFIHGTPFMISASEDHHVKVWKVTDNvwNCVQTIQHY 100
                  56788899999999999999999999999998876533455555554 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.027
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                   +vw+  ++ +  + + +a    + l++v+++dg+v++   e+
   CCD24539.1  88 DNVWNCVQTIQHYQNTIVALDVLEDLFVVGCADGNVSIWVREN 130
                  4566665555555555566667789***********9976655 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.19
  ANAPC4_WD40  37 edsevrsLaWkpdgk....lLavaysdgevrlldaesgkvvhslsvksek 82 
                  ++  ++s+a++++++    lL+ + +d  +rl  +   +++++ + ++++
   CCD24539.1 201 HEDWIKSMAFRHQETpgdyLLCSGSQDRYIRLWRIRINDLIEEQDDENDE 250
                  55567777777664333338899999999999888888877777666655 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.57
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgev 62 
                  +d  ++sL+W++    L  +++d+++
   CCD24539.1 282 HDDWISSLQWHETRLQLLASTADTAL 307
                  67779999999998888888888766 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.00075
  ANAPC4_WD40  28 rvwtl...........eedkedsevrsLaWkpdgklLavaysdgevrll 65 
                  r+w+l             +++ +ev+++aW p+gk L     d + rl+
   CCD24539.1 368 RIWKLtdnnqtceqelGISGPIKEVTDIAWAPNGKYLLATSLDQTTRLF 416
                  555555555555444444566789*************999888888775 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.0065
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdge 61 
                  +++ e++++  +pdgk++a a+  ++
   CCD24539.1 563 GHGYEITCVDVSPDGKFIASACRSNT 588
                  67899*****************9886 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 0.034
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrl 64 
                  + +  +++ L++++d+k L  ++ d +  +
   CCD24539.1 610 EFHTLTITRLEFSHDNKYLLSVCRDRQWAV 639
                  457889*****************9987665 PP

  == domain 8  score: 9.6 bits;  conditional E-value: 0.00036
  ANAPC4_WD40   9 LiAlatedgellvfRlngqrvwtl.....eedkedsevrsLaWkpdg....klLavaysdgevrllda 67 
                  L+A++ e+ge+ v+  + +  ++l     ++ ++ ++++ L+W+  +     lL v+ +d++ r++++
   CCD24539.1 725 LVAVGLETGEIFVYKYDSEDGFQLvhtleDSITPAGKITRLRWSTADmdkrMLLGVSSNDSSARIYSI 792
                  99**************9955555555557777899********9754222246778888889999886 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.2   0.00014      0.42     260     288 ..      72     102 ..      49     126 .. 0.76
   2 ?   -3.9   0.0       1.7   5.1e+03      68      95 ..     147     178 ..     136     184 .. 0.73
   3 ?    0.7   0.0     0.067     2e+02     175     230 ..     376     433 ..     349     442 .. 0.75
   4 !    5.4   0.0    0.0024       7.3      20      90 ..     566     637 ..     557     656 .. 0.77
   5 ?   -1.9   0.0      0.43   1.3e+03      76     100 ..     720     745 ..     712     768 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00014
    Ge1_WD40 260 itgadnnselklWsc..elWtClqtikfaps 288
                 + +a++++ +k+W +  ++W+C+qti+   +
  CCD24539.1  72 MISASEDHHVKVWKVtdNVWNCVQTIQHYQN 102
                 446788999****873469*******87654 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.7
    Ge1_WD40  68 vldlafah...vsskillavd.ekgslfvykv 95 
                 vl l+fa    +++k lla+   ++++f+y+ 
  CCD24539.1 147 VLPLSFALsnvTDNKYLLAIGgTNVNVFIYSF 178
                 67788885222578899999625689999975 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.067
    Ge1_WD40 175 eeieegllkieehs.liveaafspdGtalatasedGevkffqvylede.eeprCLheW 230
                 +++ e  l i+    ++++ a++p+G  l ++s d + ++f  +l ++ +++r    W
  CCD24539.1 376 NQTCEQELGISGPIkEVTDIAWAPNGKYLLATSLDQTTRLFAPWLYNAdKSKRSTITW 433
                 44445666777664489999999****99999*******9999988762445555555 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0024
    Ge1_WD40  20 yvGqLvavhregkylayaikvkntgeglvrvvnk..eteeraLlkglkgevldlafahvsskillavdekgsl 90 
                 y    v v+ +gk++a a +++   ++++r+ ++   +e + +l   + +++ l+f+h + k ll+v    + 
  CCD24539.1 566 YEITCVDVSPDGKFIASACRSNTPQHAVIRIFETgnWLEVKPVLEFHTLTITRLEFSHDN-KYLLSVCRDRQW 637
                 55567889999**********99999*****87522578888999899999999999965.455555555555 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 0.43
    Ge1_WD40  76 vsskillav.dekgslfvykveeves 100
                 v++kil+av  e+g++fvyk +++++
  CCD24539.1 720 VDKKILVAVgLETGEIFVYKYDSEDG 745
                 5778888884589*******998875 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.3   3.6e-05      0.11      13     121 ..      26     140 ..      18     147 .. 0.76
   2 ?   -2.4   0.0      0.77   2.3e+03      64     138 ..     229     300 ..     202     314 .. 0.59
   3 !    3.9   0.1    0.0097        29      83     110 ..     711     741 ..     683     757 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.6e-05
   WD40_like  13 slilyGgkddkctv...lkleslesvsivesfedSvifvkllddd.lilvvtlDGtillsllenee..eve.nekieedistvkviddklliGtnkGsi 104
                 +++++G+ + ++++   l+  ++ +++ +++ e  v  vk++++   ++ ++ D  +   +++ +    v+ +++ ++ i   +v++d +++G   G++
  CCD24539.1  26 NIVAFGACN-TIALwdpLDPSNHGVIQTLKGHEADVTCVKFIHGTpFMISASEDHHVKVWKVTDNVwnCVQtIQHYQNTIVALDVLEDLFVVGCADGNV 123
                 556666544.3333111344567788899999999*********9566778999999988888876775551577899********************* PP

   WD40_like 105 yvfskdlqleevllgqs 121
                  ++ ++ +l++ +++q+
  CCD24539.1 124 SIWVRENELDTFVMSQE 140
                 99998877888887775 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.77
   WD40_like  64 tillslleneeevenekieedistvkviddklliGtnkGsiyv...fskdlqleevllgqsseIkeikiennkiysLs 138
                 +i l  ++ ++ +e+++ e+d  + + +++k +      + +v   ++  +++e +++g+   I +++ ++ ++  L+
  CCD24539.1 229 YIRLWRIRINDLIEEQDDENDENKLELLNNKQY------KFHVaddLKVCINFEALIMGHDDWISSLQWHETRLQLLA 300
                 555555555555555555555555555554433......222222234446677788888888888887777665554 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.0097
   WD40_like  83 edistvkvi.ddk..lliGtnkGsiyvfskd 110
                  ++s+ +++ d+k  +++G ++G+i+v++ d
  CCD24539.1 711 TALSVYDYVvDKKilVAVGLETGEIFVYKYD 741
                 5555555431344225689999999999887 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2         2   6.1e+03      29      37 ..     363     370 ..     362     371 .. 0.88
   2 ?    4.3   0.0     0.013        40      12      23 ..     393     404 ..     385     408 .. 0.84
   3 ?   -3.6   0.1       4.2   1.3e+04       3      12 ..     451     460 ..     450     461 .. 0.80
   4 ?    3.5   0.0     0.025        73      11      24 ..     568     581 ..     564     581 .. 0.78
   5 ?   -3.1   0.0       2.7   8.2e+03      19      33 ..     634     647 ..     634     648 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2
                 CT.TCEEEE CS
        PD40  29 RgsGkpdIy 37 
                 R+ G+++I+
  CCD24539.1 363 RT-GSWRIW 370
                 89.****** PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.013
                 EEEEE-TTSSEE CS
        PD40  12 gaPsfSPDGkrl 23 
                 +++++ P+Gk+l
  CCD24539.1 393 TDIAWAPNGKYL 404
                 789*******98 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 4.2
                 E--SSSS.EE CS
        PD40   3 rltntpgneg 12 
                 ++tnt ++ g
  CCD24539.1 451 PITNTRFISG 460
                 89**999876 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.025
                 EEEEEE-TTSSEEE CS
        PD40  11 egaPsfSPDGkrla 24 
                 +++  +SPDGk +a
  CCD24539.1 568 ITCVDVSPDGKFIA 581
                 566668*****997 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 2.7
                 TSSEEEEEEECT.TC CS
        PD40  19 DGkrlaFsSdRgsGk 33 
                 D ++ ++ ++ + Gk
  CCD24539.1 634 DRQWAVWERTAD-GK 647
                 889999999887.75 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.7       2.6   7.9e+03      29      36 ..     243     250 ..     238     259 .. 0.51
   2 ?   11.2   0.3   0.00012      0.36      28      77 ..     509     557 ..     504     564 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.6
  CENP-B_dimeris  29 dedeedde 36 
                     ++d+e+de
      CCD24539.1 243 EQDDENDE 250
                     22222222 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00012
  CENP-B_dimeris  28 ededeeddedddevpvpsfgeamayfamvkryltsfpiddrvqshilhle 77 
                     ++ d+ +dedddev      + +a   +v   +t+ p +d++q h+l  e
      CCD24539.1 509 DNPDDSEDEDDDEVNHVGEEKNIATSELVEG-MTTPPKEDQLQRHLLWPE 557
                     4567888999999998888888999888875.7888*********99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5459.71
//
Query:       CCD24540.1  [L=164]
Description: hypothetical protein NDAI_0D02260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-08   34.6   0.1      3e-08   34.1   0.1    1.3  1  Rhodanese  Rhodanese-like domain
  ------ inclusion threshold ------
      0.097   13.0   0.2       0.21   11.9   0.2    1.5  1  YnfE       Uncharacterized YnfE-like


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   3.4e-12     3e-08      15     106 ..      28     145 ..      14     146 .. 0.70

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 3.4e-12
   Rhodanese  15 a......llDvRppeeYekghIpgAvnv..........skdtlsrakkseapllelpeellel.gidnkktv...vvycdgggr.aaaaaa.llk.... 87 
                        ++DvR ++ Y  ghI  + +             d l++  ++e+   +l e+ +   ++d+++tv   v++c+ +++   +aa+ ll+    
  CCD24540.1  28 SlgqpfqVIDVRGSD-YIGGHIFQSWHYpykelshnliLLDELKKRLENERLESKLKEKSATTsDVDEDETVinaVFHCAQSQQrGPSAAMkLLRhlnd 125
                 2344566******76.************99999766654444444444444555555555555999*****944459*******888887735555544 PP

   Rhodanese  88 .klGyknvsvldGGfkawke 106
                  +l + +++vl+GGf+ w+ 
  CCD24540.1 126 gELEHIQIWVLRGGFNHWQD 145
                 4488777***********96 PP

>> YnfE  Uncharacterized YnfE-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   2.3e-05      0.21      33      65 ..      72     107 ..      66     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.3e-05
        YnfE  33 keqlelYekqLkqesssdedfDe...vvdavvkcAa 65 
                 + + e+ e +Lk++s++  d De   v++av +cA+
  CCD24540.1  72 RLENERLESKLKEKSATTSDVDEdetVINAVFHCAQ 107
                 3345999**********99998555599******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1020  (0.0568911); expected 358.6 (0.02)
Passed bias filter:                      742  (0.0413855); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1206.66
//
Query:       CCD24541.1  [L=948]
Description: hypothetical protein NDAI_0D02270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-251  835.2   0.2   2.8e-251  834.6   0.2    1.3  1  FTHFS            Formate--tetrahydrofolate ligase
    8.2e-62  207.2   0.3    2.2e-61  205.9   0.3    1.8  1  THF_DHG_CYH_C    Tetrahydrofolate dehydrogenase/cyclohydrolas
    3.7e-38  130.4   0.6    8.3e-38  129.2   0.6    1.7  1  THF_DHG_CYH      Tetrahydrofolate dehydrogenase/cyclohydrolas
  ------ inclusion threshold ------
      0.018   14.6   0.1      0.051   13.1   0.1    1.7  1  GTP_EFTU         Elongation factor Tu GTP binding domain
       0.02   15.3   0.0      0.074   13.5   0.0    2.0  1  Glyco_trans_1_4  Glycosyl transferases group 1
       0.04   14.0   3.3       0.66   10.0   0.2    3.1  3  AdoHcyase_NAD    S-adenosyl-L-homocysteine hydrolase, NAD bin
      0.099   12.7   0.0       0.47   10.5   0.0    2.3  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai


Domain annotation for each model (and alignments):
>> FTHFS  Formate--tetrahydrofolate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  834.6   0.2  1.1e-254  2.8e-251       2     554 .]     317     948 .]     316     948 .] 0.98

  Alignments for each domain:
  == domain 1  score: 834.6 bits;  conditional E-value: 1.1e-254
                 -HHHHHHCS----HHHHHHCTT--CCCEEEBSTTEEEE-CHHCCTCTTTS-.-EEEEEEESS--TT--SHHHHHHHHHHHHH.HTT--EEEEE----SH CS
       FTHFS   2 sdieiaqeaklkpieeiaeklglkeeelelyGkykakvslkvlerllkekkkgklilvtaitPtplGeGKttttigLaqaln.klgkkavaalRepslG 99 
                  d+ei++++++k+i+++a + g+  +e+e+yG++k kvsl+vl+rl +++++gk+ilvt+itPtplGeGK+ttt+gLaqa++ +l+k+++a++R+ps+G
  CCD24541.1 317 ADFEISRAQTPKEITQVALESGILPSEFEPYGSTKGKVSLDVLDRL-QDRENGKYILVTGITPTPLGEGKSTTTVGLAQAFGaHLNKTVFANVRQPSMG 414
                 69*****************************************976.9*********************************99**************** PP

                 HHHCST--SCEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTTT............................................. CS
       FTHFS 100 PvfgiKGgAaGGGysqvvPmedinLhltGDihaitaannllaalidnrifhene............................................. 153
                 P fgiKGgAaGGGysqv+Pm+d+nLh+tGDihai+ annllaa+id+r+fhe++                                             
  CCD24541.1 415 PSFGIKGGAAGGGYSQVIPMDDFNLHVTGDIHAISIANNLLAAAIDTRMFHESTqkdgplykrlvpakkgvraftpsmlrrlkklgidktnpddlteee 513
                 *************************************************************************************************** PP

                 ......T-EECCCE---EEESS--GGGSSEEES-SSTTS---EEE-EEEGGGSHHHHHHHH-SSHHHHHHHHHC-EEEEETTS-EEECCCCT-HHHHHH CS
       FTHFS 154 ......ldidpkkitwkrvlDvndraLRkivvglggkekgvpretgfditvasEimailaLakdledlkerlgrivvaytkdgepvtaedlkvagalav 246
                       ldidp++itw+rv+D+ndr+LR i++g++++e+g++r+tgfdi+vasE+mailaL+++l+d++erlg+iv++ +k+gep+t+ed+++aga+++
  CCD24541.1 514 itrfarLDIDPETITWRRVVDCNDRMLRGITIGEAPTERGFTRHTGFDISVASECMAILALTNSLADMRERLGKIVIGASKAGEPITCEDIGCAGAMTA 612
                 *************************************************************************************************** PP

                 HTTTTTS-EEEEETT--EEEE-----SSSS--B--HHHHHHHHHH...............-SEEEEEBSSSTTTHHHHHHHTHHHHHT---SEEEEEEE CS
       FTHFS 247 llkdaikPnlvqtlegtpalvHggPFAniahGcnsviatklalkl...............adyvvtEaGFgadlgaekfldikcrasglkpdavvlvat 330
                 llkdaikPn++qtlegtp++vH+gPFAni++G++sv+a+k+alkl                +yv+tEaGF++++g e+f++ikcr+sgl pd+vv+vat
  CCD24541.1 613 LLKDAIKPNIMQTLEGTPVFVHAGPFANISIGASSVLADKMALKLagveptlteslkkerVGYVITEAGFDFTMGGERFINIKCRSSGLVPDVVVIVAT 711
                 ***********************************************************99************************************** PP

                 HHHHHHHTT....--C.....CCTTS--HHHHHHHHHHHHHHHHHHCTTT--EEEEEE--TT--HHHHHHHHHHH.HCTTSEEEEE-HHHHGGGGGHHH CS
       FTHFS 331 vraLklhgg....vek.....eelkeenlealekGlanlekhienvkkfgvpvvvainkfktDteaelelvkela.eakavevalsevwakGgeGalel 419
                 vraLk+hgg      +     +e+ +en+++l+kG+anl+khi+n++++++pv+vaink++tDt+ae++++ke++ +a+a+++++s++w++Gg Ga++l
  CCD24541.1 712 VRALKVHGGgaevK-AgaplpAEYLTENVDMLRKGCANLAKHISNARQYNLPVIVAINKMSTDTAAEHQVIKEESlKAGAYDAIVSNHWEEGGLGAVDL 809
                 *********87750.2557789***************************************************999*********************** PP

                 HHHHHHHCC..-.-.---SS-TT.S-HHHHHHHHHHHTT--SEEEE-HHHHHHHHHHHHTTCTTS-EEEE--SSSSSSSTT--SS--S-EEEEEEEEEE CS
       FTHFS 420 aeavveale..e.kefkflYdle.lsieekietiakeiYgadgvelseeakkklkklekqgldklpvciaKtqySlsddpklkgapegftltvrevrls 514
                 a+ ++ea++  + ++f+flY++e +++ee+ietia+e+Yga++ve+ +ea+kk++ ++kqg+++lp+ciaKtqySls+d+klkg+p+gft+++r+vr+s
  CCD24541.1 810 ANGIIEATQktNnDDFQFLYKTEgQTVEERIETIAQEMYGAKDVEFLPEAQKKIELYTKQGFGNLPICIAKTQYSLSHDAKLKGVPTGFTFPIRDVRAS 908
                 ********9642356*****9885899************************************************************************ PP

                 TTTTEEEEESST--SS----SS-GGGC-EE-TTSEEES-- CS
       FTHFS 515 aGagfivalageimtmPGlpkkpaaekidvdeegkieGlf 554
                 +Gag+++ala+ei+t+PGlp+++ +++i+v+++g+ieG+f
  CCD24541.1 909 IGAGYLYALAAEIQTIPGLPTHCGFMNIEVNDDGEIEGMF 948
                 **************************************97 PP

>> THF_DHG_CYH_C  Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.9   0.3   8.4e-65   2.2e-61       2     159 ..     126     294 ..     125     295 .. 0.96

  Alignments for each domain:
  == domain 1  score: 205.9 bits;  conditional E-value: 8.4e-65
                    HHHHHHHHTT..--SS--HHHHHHHHHHHHCT---TT-EEEEE---TTTHHHHHHHHHCTT-EEEEE-TTSCCHHHHHCCSSEEEE-SS-TT-B-G CS
  THF_DHG_CYH_C   2 plnlgrlvkg..eeallpctpkgvvellketgielegkkvvvvGrsnivgkplallLleknatVtvchsktkdlaeitreadivvvavGkpelika 95 
                    p+n+g+l k+  ++ +lpctpkgv+ellk+ +++++g k vvvGrs+ivg+p+a lL++ ++tVt++hsktkd++++++ adivvva+G+pe++k+
     CCD24541.1 126 PMNIGELNKKngNPDFLPCTPKGVIELLKRFNVTIAGSKSVVVGRSDIVGSPVAELLKSLDSTVTITHSKTKDIPSYLKDADIVVVAIGRPEFVKG 221
                    79******997899********************************************************************************** PP

                    GGS...-TT-EEEE---EEC......-TTEEE-SB-HHHHCTTSSEE--TTTSCHHHHHHHHHHHHHHHHHCH CS
  THF_DHG_CYH_C  96 emv...kegavviDvGinrv......ekgklvGDvdfeevkevasaitPvpgGVGpmTvamllkntleaakrq 159
                    e++   k+g vviDvG+n v      ++ k+vGDv+f+e+ +++++itPvpgGVGpmTvaml++ntl aakr+
     CCD24541.1 222 EWFkdnKKGCVVIDVGTNYVedstkkSGFKCVGDVEFNEALKYVKLITPVPGGVGPMTVAMLMQNTLIAAKRE 294
                    ***5555799***********999888889****************************************985 PP

>> THF_DHG_CYH  Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.6   3.2e-41   8.3e-38       1     116 []       5     122 ..       5     122 .. 0.98

  Alignments for each domain:
  == domain 1  score: 129.2 bits;  conditional E-value: 3.2e-41
                  E--HHHHHHHHHHHHHHHHHHHHHH..T---EEEEEEES--HHHHHHHHHHHHHHHHTT-EEEEEEE-TT--HHHHHHHHHHHHH-TT--EEEE-SS- CS
  THF_DHG_CYH   1 lldGkalakeireelkeeveklkek..gvkpkLavilvgddpasevYvrnkkkaceevGieseliklpedvseeellklieelneddsvdGilvqlPl 96 
                  l+dGka+ak iree+++e+++lke+   +kp+La+i+vg++p+s++Yvr+k ka+ee+Gi  + i+l+e+++e el k + +lned++ +Gi+vqlPl
   CCD24541.1   5 LIDGKATAKVIREEISQEITSLKEQipTFKPNLAIIQVGTRPDSATYVRMKCKAAEEAGIIANFIHLEESITEHELYKHVVKLNEDPETHGIIVQLPL 102
                  69*********************966699********************************************************************* PP

                  STTS-HHHHHCCS-GGGBTT CS
  THF_DHG_CYH  97 pkhidekaileaispeKDVD 116
                  p+hi+e++i++a+  +KDVD
   CCD24541.1 103 PSHINEDRITSAVLSSKDVD 122
                  *******************9 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1     2e-05     0.051     108     150 ..     746     788 ..     738     870 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2e-05
                 THHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHH CS
    GTP_EFTU 108 epqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqkl 150
                 +++  +++  a+++++p+iv+iNKm    a   ++++e + k 
  CCD24541.1 746 CANLAKHISNARQYNLPVIVAINKMSTDTAAEHQVIKEESLKA 788
                 677789*******************887444444444444344 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.9e-05     0.074      15      81 ..     147     217 ..     141     250 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.9e-05
                      GTHHHHHHHH.HHHH.HHEEEEEES---...HHHHHHHTT-T.TEEEE---.THHHHHHHH-SEEEE--...- CS
  Glyco_trans_1_4  15 kgvdllleav.pllrkkdvrlvivGdgp.rpeeleelaagleerveftGfv.edlaellaaadvfvaPs...e 81 
                      kgv  ll+ +   ++ +  + v+vG+++   + + el++ l+++v++t    +d++++l++ad++v+ +   e
       CCD24541.1 147 KGVIELLKRFnVTIAGS--KSVVVGRSDiVGSPVAELLKSLDSTVTITHSKtKDIPSYLKDADIVVVAIgrpE 217
                      77777888885556644..6677776655334555566788899999998889*************9876443 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       4.5   1.1e+04      99     126 ..      58      85 ..      49      90 .. 0.76
   2 ?   10.0   0.2   0.00026      0.66      18     114 ..     157     241 ..     143     251 .. 0.78
   3 ?   -3.0   0.0       2.6   6.6e+03      84     108 ..     773     797 ..     762     800 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.5
                    CS-TTEEEEE-SSTTTTBTHHHHHTTT- CS
  AdoHcyase_NAD  99 kmkddaivcniGhfdseidvaaleanal 126
                    + ++  i++n  h ++ i  ++l ++ +
     CCD24541.1  58 AAEEAGIIANFIHLEESITEHELYKHVV 85 
                    5567889999999999999888877654 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00026
                    -S--TTSEEEEE--SH.HHHHHHHHHHHCT-EEEEE-S-HHHHHHHHCTT-EE--HHHCTTT-SEEEE-SSSSSSB-HHHHCCS-TTEEEEE-SST CS
  AdoHcyase_NAD  18 dvllaGkvavvaGyGd.vGkGcaaslkglGarvivtevdPicalqaameGfevvtleevvkkadivvtttGnkdiitlehlkkmkddaivcniGhf 112
                    +v +aG + vv+G  d vG   a+ lk+l + v++t               + + +   +k+adivv + G  + ++ e +k  k+ ++v ++G  
     CCD24541.1 157 NVTIAGSKSVVVGRSDiVGSPVAELLKSLDSTVTITHS-------------KTKDIPSYLKDADIVVVAIGRPEFVKGEWFKDNKKGCVVIDVGTN 239
                    57778877788887775688888888888888888763.............456677888999999999999999999999999999999999976 PP

                    TT CS
  AdoHcyase_NAD 113 ds 114
                      
     CCD24541.1 240 YV 241
                    55 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.6
                    E-SSSSSSB-HHHHCCS-TTEEEEE CS
  AdoHcyase_NAD  84 tttGnkdiitlehlkkmkddaivcn 108
                     t+  +++i+ e lk+   daiv+n
     CCD24541.1 773 DTAAEHQVIKEESLKAGAYDAIVSN 797
                    4566789999999999999999998 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00019      0.47       9      29 ..     382     402 ..     376     794 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00019
                 TSSHHHHHHHHHHHHHHTT-- CS
                 xxxxxxxxxxxxxxxxxxxxx RF
        CbiA   9 GvGKTtlaanLaralarrglr 29 
                 G+GK+t++++La+a+  + ++
  CCD24541.1 382 GEGKSTTTVGLAQAFGAHLNK 402
                 99*************985333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (948 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       499  (0.027832); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 6620.11
//
Query:       CCD24542.1  [L=296]
Description: hypothetical protein NDAI_0D02280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.014   15.5   0.0      0.025   14.7   0.0    1.4  1  Torsin        Torsin
      0.015   15.7   0.0      0.035   14.5   0.0    1.7  1  RNA_helicase  RNA helicase
       0.03   14.4   0.0      0.068   13.2   0.0    1.6  1  AAA_14        AAA domain
      0.046   14.3   0.2        0.1   13.1   0.1    1.8  2  AAA_18        AAA domain
      0.059   13.7   0.0      0.096   13.1   0.0    1.4  1  AAA_16        AAA ATPase domain
       0.12   12.3   0.0       0.17   11.8   0.0    1.3  1  ATPase_2      ATPase domain predominantly from Archaea
       0.17   11.2   0.0       0.27   10.5   0.0    1.2  1  Zeta_toxin    Zeta toxin


Domain annotation for each model (and alignments):
>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   9.9e-06     0.025      49      80 ..      25      56 ..       6      85 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 9.9e-06
                S-SS-EEEEEEE-TTSSHHHHHHHHHHHHSTT CS
      Torsin 49 kpkkpLvlsfhGwtGtGknfvaeiiaenlyrd 80
                 ++ pL + f G  G+Gk++ ++ii e+l ++
  CCD24542.1 25 GTRDPLFIFFSGPQGSGKSYTSKIIYEHLLKK 56
                5689***********************99875 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   1.4e-05     0.035       1      33 [.      32      64 ..      32      89 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.4e-05
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkkds 33
                  i+++Gp+g GKS+++k + ++llkk+  + +++
    CCD24542.1 32 IFFSGPQGSGKSYTSKIIYEHLLKKYSGEGEGN 64
                  789********************9995444444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.7e-05     0.068       5      49 ..      32      86 ..      28     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.7e-05
      AAA_14  5 lvitGaRrvGKTtllkqlikell..........vkkesilyinldderdkkladp 49
                ++ +G+  +GK++  k ++++ll          v k+ i y+++dd  ++ +++ 
  CCD24542.1 32 IFFSGPQGSGKSYTSKIIYEHLLkkysgegegnVGKKTIAYVSIDDFYLTHRDQL 86
                6679**********877777777***********************887654444 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   4.1e-05       0.1       1      45 [.      32      81 ..      32     174 .. 0.70
   2 ?   -2.6   0.0       2.9   7.5e+03      40      40 ..     201     201 ..     158     237 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.1e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrl.gf..gvnlrdvakenglllevdpe..a 45
                I+ +G++G+GK+  +k + ++l +   g+  + v k+   + + d++   
  CCD24542.1 32 IFFSGPQGSGKSYTSKIIYEHLlKKysGEGEGNVGKKTIAYVSIDDFylT 81
                899***************99975335844444444444444444443332 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.9
      AAA_18  40 e 40 
                  
  CCD24542.1 201 L 201
                 1 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.8e-05     0.096      21      69 ..      26      72 ..      20     134 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.8e-05
      AAA_16 21 sgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql..esaipy 69
                + +p  +++sG++G+GKs   + ++++l k+     +g+ + +  ++ i+y
  CCD24542.1 26 TRDPLFIFFSGPQGSGKSYTSKIIYEHLLKK----YSGEGEGNvgKKTIAY 72
                567899**********************999....5666655543444555 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.7e-05      0.17       9      47 ..      16      56 ..      16     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.7e-05
    ATPase_2  9 keleeilerepneiyfiY..GpegsGKtaLlkeiienledk 47
                k++ ++  +++++++fi+  Gp+gsGK+   k i+e l++k
  CCD24542.1 16 KYIPQWFATGTRDPLFIFfsGPQGSGKSYTSKIIYEHLLKK 56
                57899************999********9999888888553 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00011      0.27      14      40 ..      27      53 ..      18      59 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00011
  Zeta_toxin 14 erPklillgGqpGAGKselaellkdel 40
                + P  i+ +G +G+GKs++++ + + l
  CCD24542.1 27 RDPLFIFFSGPQGSGKSYTSKIIYEHL 53
                78*****************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2395.04
//
Query:       CCD24543.1  [L=115]
Description: hypothetical protein NDAI_0D02290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-38  129.1   1.7    8.2e-38  128.7   1.7    1.1  1  Mvb12     ESCRT-I subunit Mvb12


Domain annotation for each model (and alignments):
>> Mvb12  ESCRT-I subunit Mvb12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7   1.7   4.6e-42   8.2e-38       1      90 []      25     114 ..      25     114 .. 0.99

  Alignments for each domain:
  == domain 1  score: 128.7 bits;  conditional E-value: 4.6e-42
                 HHHS--EESSSTTS------------------HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHS--XXXXXXXXXXXXXXXXX CS
       Mvb12   1 LrkipLynklgedfPkeklsklevpelkleelqptkemlepwykecdelvealekhdksgeeFdkWYkekyLskkPpGllessvLsPskk 90 
                 LrkipLynk+gedfPke+l+ ++vpe+k++elqpt++m++pwy+ecd+lv+++e+hdks+e+Fd+W  +kyL++kPpG++ s++LsPsk+
  CCD24543.1  25 LRKIPLYNKYGEDFPKETLQLMKVPEFKYNELQPTETMFKPWYEECDNLVKTCEQHDKSNESFDNWLYDKYLKTKPPGMMGSTLLSPSKR 114
                 8***************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 965.63
//
Query:       CCD24544.1  [L=270]
Description: hypothetical protein NDAI_0D02300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-35  122.5   0.0    2.4e-35  122.1   0.0    1.1  1  ETF       Electron transfer flavoprotein domain


Domain annotation for each model (and alignments):
>> ETF  Electron transfer flavoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.0   1.3e-39   2.4e-35       9     181 ..      36     226 ..      29     227 .. 0.91

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 1.3e-39
                 .CCCE-HHHHHHHHHHHHHHHH...HT.--EEEEEEES....S-CHHHHHHCT-SEEEEEE-GGGSS-.....-CCHHHHHHHHHHHHC--SEEEEESS CS
         ETF   9 vdgklnpvdlealeaArrlkek...ag.gevtavvvGppeaeealrealaamGadkvilvddpalagy.....daeatakalaalikkedpdlvlagat 98 
                  + ++np+d  a+e+ + ++++   a   + +av++G+p++e+ lr++la +G++k+ l++++a +       +++ +ak+l++++kked+ lv++g++
  CCD24544.1  36 LKFSINPFDDIAIEESLTIRKNlskAIpVSTHAVTIGSPKSESILRTCLA-KGVEKATLIKHDAKDDEasssfEPLIIAKILKEMVKKEDIGLVIMGKQ 133
                 5678***************999886334889*******************.*********9888776555666************************** PP

                 CC.H..HHHHHHHHHHCT-EEEEEESEEEEETCC.....EEEEEECCCCTEEEEEE-TSSSEEEEE-TTSS--.....--S-TT---EEEE--HHH CS
         ETF  99 ai.g..kqvaprlAalLgvplitdvteleveggk.....ltvtRpieggnglaevveadlpavltvrpgafep.....aaimaakkkeveevevad 181
                 ai +  ++++++lA lL++p+it+vt+le  + +     ++++R+i+g  g+ e++  +lp ++tv+ g++ p     +++m+akkk++e +++++
  CCD24544.1 134 AIdDdfNNTGQMLAGLLNWPQITNVTKLEFLDATgdqlkVRAVREIDG--GN-ETLVMKLPGLITVDLGLNTPryvklQNMMKAKKKPIEILDLKE 226
                 **66***********************8884344578***********..99.99***********************99**********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 2341.95
//
Query:       CCD24545.1  [L=313]
Description: hypothetical protein NDAI_0D02310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-16   61.8   0.0    2.3e-16   60.8   0.0    1.5  1  Hydrolase      haloacid dehalogenase-like hydrolase
    8.5e-12   45.9   0.0    1.2e-11   45.4   0.0    1.2  1  HAD            haloacid dehalogenase-like hydrolase
    2.9e-10   40.3   0.9    1.7e-08   34.5   0.0    3.0  3  Hydrolase_3    haloacid dehalogenase-like hydrolase
    1.2e-05   25.5   1.0       0.17   11.9   0.5    2.6  2  HAD_2          Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.073   12.6   0.1        0.5    9.9   0.0    2.0  2  S6PP           Sucrose-6F-phosphate phosphohydrolase
      0.073   11.9   0.1        0.1   11.5   0.1    1.1  1  CALCOCO1       Calcium binding and coiled-coil domain (CALCOC
       0.08   12.9   0.5       0.77    9.7   0.4    2.4  1  RE_BsaWI       BsaWI restriction endonuclease type 2
       0.08   13.2   0.3       0.24   11.7   0.1    2.0  2  Peptidase_C34  Putative closterovirus papain-like endopeptida


Domain annotation for each model (and alignments):
>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0     1e-19   2.3e-16       2     210 .]      89     264 ..      88     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 1e-19
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtv 100
                 k++vfD+d TL+  e     vi+ +                     a + +++ ++ +++      +++ ++ ++ ++l      ++++  + +   + 
  CCD24545.1  89 KLFVFDMDSTLIYQE-----VIELI---------------------ASYANVEDQVREITN-----RAMNNEIDFKESL------RERVKLLTGLRID- 149
                 89**********888.....99999.....................999999*********.....*************......4444444443333. PP

                 HHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGE.SEEEEHHCES...........STTTSHHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx...........xxxxxxxxxxxxxxxxx RF
   Hydrolase 101 allqaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyf.daviasdiet...........vakpspegkvaaireLq 187
                       ++  ++++    +  +++e+++ Lk +g+++++l+g++ ++a  + +ql +d+  ++ ++ d ++            +  + + ++++++e++
  CCD24545.1 150 -----TLYDKIKLQLR--ITNGVKELCQFLKVKGCKLAVLSGGFIQFATFIKDQLEFDFAkANLLEMDSNGnltgnvlgeivDGQCKADTLKQLCKEYN 241
                 .....45557777766..**************************************6666566666666668745554444444448888888888889 PP

                 STGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 188 gkpeevamVGDgvnDaaalaaAg 210
                 +k+ee +mVGDg nD++a+  Ag
  CCD24545.1 242 VKIEESCMVGDGGNDLPAMGTAG 264
                 ******************98776 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   5.3e-15   1.2e-11       2     187 ..      92     260 ..      91     261 .. 0.77

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 5.3e-15
         HAD   2 lfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaellea...llagls.eelaaelerfvaevirpklldpgalellaa 96 
                 +fD+D TL+ ++ +el++           ++ ++ + +++    ++ +++ +++e l++   ll gl+ + l + ++  +        ++ g++el++ 
  CCD24545.1  92 VFDMDSTLIYQEVIELIAS----------YANVEDQVREIT--NRAMNNEIDFKESLRErvkLLTGLRiDTLYDKIKLQL-------RITNGVKELCQF 171
                 9**********77776666..........555555555555..3333334444555555011555555444444444444.......4668******** PP

         HAD  97 hraaGdrvvvvSgglrplvepllaelgadevlatelevdd..rltgelglegkpvrgegkvaalrewlaaegegidleevvayGDspsDlpll 187
                  + +G +++v+Sgg+ +++  + ++l +d   a+ le d    ltg   + g +v g+ k++ l++    ++++ ++ee++ +GD+ +Dlp++
  CCD24545.1 172 LKVKGCKLAVLSGGFIQFATFIKDQLEFDFAKANLLEMDSngNLTGN--VLGEIVDGQCKADTLKQ--LCKEYNVKIEESCMVGDGGNDLPAM 260
                 **********************************77777778*****..*****************..88888899999************98 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.065   1.5e+02       2      34 ..      92     132 ..      91     133 .. 0.79
   2 ?    1.1   0.0      0.12   2.7e+02      15      66 ..     160     216 ..     149     227 .. 0.77
   3 !   34.5   0.0   7.7e-12   1.7e-08     180     243 ..     222     283 ..     187     293 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.065
                  EEEIIIIIS-........TTS---HHHHHHHHHHHHTTSEE CS
  Hydrolase_3   2 alDlDGTLln........sdkkisektkeaikklkekgikv 34 
                  ++D+D TL+         s  +++++ +e+ +++++++i +
   CCD24545.1  92 VFDMDSTLIYqevieliaSYANVEDQVREITNRAMNNEIDF 132
                  89******987777777777778888888888888887765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.12
                  ---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC.....SEEEE..GGGTEE CS
  Hydrolase_3  15 kisektkeaikklkekgikvviATGRslravlpvleelgld.....lpvia..lNGali 66 
                  +i++  ke ++ lk kg+k+++ +G  ++++  + ++l++d     l      +NG l+
   CCD24545.1 160 RITNGVKELCQFLKVKGCKLAVLSGGFIQFATFIKDQLEFDfakanLL--EmdSNGNLT 216
                  588889999999999******999999999999988999885543333..144777776 PP

  == domain 3  score: 34.5 bits;  conditional E-value: 7.7e-12
                  EEEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE CS
  Hydrolase_3 180 eimpkgvsKgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvt 243
                  ei+  g  K+ +lk+l+ke+n++ ee   +GDg ND++ +  ag+g+A  na+++v+++A +  
   CCD24545.1 222 EIVD-GQCKADTLKQLCKEYNVKIEESCMVGDGGNDLPAMGTAGFGIAW-NAKPKVQEVAPCKL 283
                  4444.445****************************************6.9********98755 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.5   7.7e-05      0.17       2     104 ..      92     185 ..      91     201 .. 0.65
   2 !   11.4   0.0   0.00011      0.25     138     177 ..     230     269 ..     219     270 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.7e-05
       HAD_2   2 iFDlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeLkeagyklgi 100
                 +FD+D Tl+ +e +i  ++ ++  e ++ e+++  +++ i ++   +lr+  +      +    +++ +++ k  ++++ +gvkel + Lk +g kl++
  CCD24545.1  92 VFDMDSTLIYQE-VIELIASYANVEDQVREITNRAMNNEIDFKE--SLRERVK-----LLTGLRIDTLYDKIKL-QLRITNGVKELCQFLKVKGCKLAV 181
                 7******99654.4444444555555556666666666555544..3333333.....2333334444444444.5999******************** PP

       HAD_2 101 vTsk 104
                  + +
  CCD24545.1 182 LSGG 185
                 9986 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00011
       HAD_2 138 peviekaleklklkkeeviyvGDsptDieaakkagikvia 177
                 +++++++++++++k ee  +vGD  +D+ a   ag  +++
  CCD24545.1 230 ADTLKQLCKEYNVKIEESCMVGDGGNDLPAMGTAGFGIAW 269
                 788999************************9999977665 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.19   4.2e+02       2      17 ..      88     103 ..      87     131 .. 0.74
   2 ?    9.9   0.0   0.00022       0.5     166     204 ..     229     267 ..     218     285 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.19
                 SEEEEE-TBTTTB.S- CS
        S6PP   2 klllvsdLDntlvdgd 17 
                 k+l+v d+D+tl+ ++
  CCD24545.1  88 KKLFVFDMDSTLIYQE 103
                 6899********9433 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHHT--GGGEEEEE-SGGGHHHHTSSSEEE CS
        S6PP 166 kgeAlryLakkleleleqilvcGdsgnDeellignvlgV 204
                 k+++l+ L+k ++++ e+  ++Gd gnD   + +   g+
  CCD24545.1 229 KADTLKQLCKEYNVKIEESCMVGDGGNDLPAMGTAGFGI 267
                 899*************************99886665665 PP

>> CALCOCO1  Calcium binding and coiled-coil domain (CALCOCO1) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   4.5e-05       0.1     133     190 ..     113     171 ..      92     177 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.5e-05
    CALCOCO1 133 ELEeDiktltqralekEteL.eRlkerakkalaqrkeeeaerkqlqakleqseeelrsl 190
                  +E+ ++ +t+ra++ E+++ e l+er+k ++ +r +   ++ +lq ++ +  +el+++
  CCD24545.1 113 NVEDQVREITNRAMNNEIDFkESLRERVKLLTGLRIDTLYDKIKLQLRITNGVKELCQF 171
                 679****************9568******************************999875 PP

>> RE_BsaWI  BsaWI restriction endonuclease type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.4   0.00034      0.77      42      69 ..     130     163 ..      54     172 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00034
    RE_BsaWI  42 IsaKtSlreRvt.......qtgfwslklkldkktk 69 
                 I  K SlreRv+        t + ++kl+l ++ +
  CCD24545.1 130 IDFKESLRERVKlltglriDTLYDKIKLQLRIT-N 163
                 899****************99999999998765.4 PP

>> Peptidase_C34  Putative closterovirus papain-like endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       5.2   1.2e+04      22      42 ..     102     124 ..      92     133 .. 0.50
   2 ?   11.7   0.1   0.00011      0.24      39      63 ..     223     247 ..     191     268 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.2
  Peptidase_C34  22 kkpeevmlkvpnvld..rcisnk 42 
                    ++  e+++   nv d  r i+n+
     CCD24545.1 102 QEVIELIASYANVEDqvREITNR 124
                    44444444444444422223333 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00011
  Peptidase_C34  39 isnkgcslddlkaiceayeikveve 63 
                    i++  c+ d lk++c++y++k+e  
     CCD24545.1 223 IVDGQCKADTLKQLCKEYNVKIEES 247
                    44567*****************943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2266.88
//
Query:       CCD24546.1  [L=103]
Description: hypothetical protein NDAI_0D02320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-31  109.0   0.5    1.1e-31  108.8   0.5    1.0  1  Thioredoxin    Thioredoxin
    1.1e-08   34.9   0.2    1.3e-08   34.7   0.2    1.1  1  Thioredoxin_9  Thioredoxin
    1.9e-07   31.5   0.4    6.4e-06   26.6   0.4    2.1  1  Thioredoxin_2  Thioredoxin-like domain
    1.3e-06   28.7   0.1    4.6e-06   26.9   0.1    1.8  1  Thioredoxin_8  Thioredoxin-like
    6.5e-05   22.8   0.1    7.7e-05   22.6   0.1    1.1  1  AhpC-TSA       AhpC/TSA family
    0.00045   19.7   0.1    0.00052   19.5   0.1    1.1  1  OST3_OST6      OST3 / OST6 family, transporter family
     0.0015   18.4   0.1     0.0016   18.2   0.1    1.1  1  DIM1           Mitosis protein DIM1
     0.0018   18.0   0.1     0.0028   17.4   0.1    1.5  1  Redoxin        Redoxin
     0.0052   16.9   0.3      0.012   15.8   0.3    1.6  1  Thioredoxin_7  Thioredoxin-like
     0.0083   16.0   0.1      0.011   15.6   0.1    1.3  1  TraF           F plasmid transfer operon protein
  ------ inclusion threshold ------
      0.018   15.0   0.0      0.027   14.4   0.0    1.2  1  HyaE           Hydrogenase-1 expression protein HyaE
        0.1   12.4   0.4       0.27   11.0   0.2    1.7  2  DSBA           DSBA-like thioredoxin domain


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.5   7.5e-35   1.1e-31       5     102 ..       6     100 ..       2     101 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 7.5e-35
                  SSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHHH CS
  Thioredoxin   5 ltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaflk 102
                   ++++Fe+++++ +klv+v+F+A wCg+Ck++aP++ek+ae++  +  ++k+dvde +++a+k ev+++Ptl++fkngke+ ++ ga++ +++++ ++
   CCD24546.1   6 KSADEFEKAINQ-DKLVVVDFFAVWCGPCKMIAPMIEKFAEQYP-QADFVKLDVDELSEVAQKNEVSSMPTLVFFKNGKEITRVIGANP-AAIKQAIA 100
                  56789*******.*******************************.********************************************.88988875 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.2   8.4e-12   1.3e-08      35     125 ..      12      99 ..       2     103 .] 0.82

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 8.4e-12
                    HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEESS-HHHHH.. CS
  Thioredoxin_9  35 kiksiekklkilvltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqyltngaraiPtliildeegeelgvwgerPaevqelv 125
                    + +  ++kl ++ + + wCg + ++ P+++k+ae+ p+ ++  l  de  e+ +   +n+  + Ptl++++++ e   v g  Pa++++++
     CCD24546.1  12 EKAINQDKLVVVDFFAVWCGPCKMIAPMIEKFAEQYPQADFVKLDVDELSEVAQ---KNEVSSMPTLVFFKNGKEITRVIGANPAAIKQAI 99 
                    3344566677777999*********************99998888888777776...6899************9999**********9965 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.4   4.3e-09   6.4e-06       4     103 ..      17      94 ..      14      99 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 4.3e-09
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlpG 98 
                    + k v+v+f +++C+ Ck +   +++    +++       p+++++  +++               +e+a+k +v+++Pt+v f +gk +++r+ G
     CCD24546.1  17 QDKLVVVDFFAVWCGPCKMIAPMIEKF--AEQY-------PQADFVKLDVDE-------------LSEVAQKNEVSSMPTLVfFKNGK-EITRVIG 89 
                    67899**************99988888..2222.......333333333333.............45678**********88466666.999**** PP

  Thioredoxin_2  99 yvpae 103
                    + pa+
     CCD24546.1  90 ANPAA 94 
                    99885 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   3.1e-09   4.6e-06       2      68 ..      19      80 ..      17      87 .. 0.85

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 3.1e-09
                   SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS.-HHHHHHHGGGS-TTSEE.EE-T CS
  Thioredoxin_8  2 kvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldk.keeefekylkknkkpwlsvpfdd 68
                   k+v++ f+a wc pck + p + ++ e++    +  +v + +d+ +e ++++ ++++   ++ v f++
     CCD24546.1 19 KLVVVDFFAVWCGPCKMIAPMIEKFAEQYP---QADFVKLDVDElSEVAQKNEVSSM---PTLVFFKN 80
                   89***************************6...9*********87899999999999...44444554 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   5.1e-08   7.7e-05      23     101 ..      15      91 ..       4     100 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 5.1e-08
                 H.TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHHTT-E CS
    AhpC-TSA  23 y.kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvakaygvl 101
                 + ++k vv+ f++  wc +C+  +p ++k +e++    ++ + + vd++ ++++  e  s++  ++  + +++ +  g+ 
  CCD24546.1  15 InQDKLVVVDFFAV-WCGPCKMIAPMIEKFAEQYP--QADFVKLDVDELSEVAQKNEVSSMPTLVFFKNGKEITRVIGAN 91 
                 34789*********.********************..6788999999999999999999999999999998888877765 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   3.5e-07   0.00052      46     106 ..      30      82 ..      21      99 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.5e-07
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkk 106
                 C +C+ ++p +e+ a+++ + +        F+k+d+de ++v qk +++s P l++f+  k
  CCD24546.1  30 CGPCKMIAPMIEKFAEQYPQAD--------FVKLDVDELSEVAQKNEVSSMPTLVFFKNGK 82 
                 9*******************95........***************************9855 PP

>> DIM1  Mitosis protein DIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.1e-06    0.0016       2      88 ..       2      85 ..       1     100 [. 0.89

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.1e-06
                S-EE-SHHHHHHHHHH-SSSEEEEEEE-TT-HHHHHHHHHHHHHHHHTTTTEEEEEEETTT--TTSCCCTT-SSSEEEEEETTEEEE CS
        DIM1  2 lpkLetkeevdqailseeerlvviRFGrdedaeClklDelLakiaeklknfaviylvdidevpdfnkmyeledpvtilffyrnkhmk 88
                + ++++++e ++ai+  +++lvv+ F   +   C  +  +++k ae+  + a +   d+de+++  +  e+++  t++ff ++k ++
  CCD24546.1  2 VSQIKSADEFEKAIN--QDKLVVVDFFAVWCGPCKMIAPMIEKFAEQYPQ-ADFVKLDVDELSEVAQKNEVSSMPTLVFFKNGKEIT 85
                678899999999996..689**************************9876.777788***************999*****9999886 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   1.9e-06    0.0028      27      66 ..      17      55 ..       7     101 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.9e-06
                TTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEE CS
     Redoxin 27 kgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvv 66
                ++k vvv f++  +c++C+  +p +ek+ae++ + ++ ++
  CCD24546.1 17 QDKLVVVDFFAV-WCGPCKMIAPMIEKFAEQYPQADFVKL 55
                455567777777.***************999988887664 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3     8e-06     0.012       8      81 ..       9      78 ..       4      80 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8e-06
                   HHHHHHHHHT--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS--S-GGG.-TT-.--SSEEEEE CS
  Thioredoxin_7  8 ealakaaergkpvlvffgaswcftCqalerdflsdeevkaalaekfvllrvdvterdanilelde.qgvPvvafl 81
                   + ++ka  + k v v+f a wc++C+ ++ + ++  e  +  + +fv l vd    ++   +  e +  P+++f+
     CCD24546.1  9 DEFEKAINQDKLVVVDFFAVWCGPCKMIAPMIEKFAEQYP--QADFVKLDVDE--LSEVA-QKNEvSSMPTLVFF 78
                   56789999*******************9988877744433..45555555554..33322.22233558888877 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   7.2e-06     0.011     131     211 ..      20      90 ..       3      98 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.2e-06
        TraF 131 ygLlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpksqkvvpvaa 211
                    + F++  c+ c++ ap++++fa++y  +  +V++d   l e+++         + +v+++P+lv+++  ++ + +++a
  CCD24546.1  20 LVVVDFFAVWCGPCKMIAPMIEKFAEQYP-QADFVKLDVDELSEVAQ---------KNEVSSMPTLVFFKNGKEITRVIGA 90 
                 5566699999******************6.77888888888877777.........99************99877778875 PP

>> HyaE  Hydrogenase-1 expression protein HyaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.8e-05     0.027      49      96 ..      35      84 ..      32      92 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.8e-05
                HHHHHHCT-TTS-EEEEEE..THHHHHHHHHCCT-TSSSEEEEEETTEEE CS
        HyaE 49 vlpEllkaFpnalraavva..dreqeealaerfgvlktPsllflrdgeyl 96
                +++ ++++F ++  +a +   d ++ +++a++ +v+ +P+l+f+++g+ +
  CCD24546.1 35 MIAPMIEKFAEQYPQADFVklDVDELSEVAQKNEVSSMPTLVFFKNGKEI 84
                6777888888887776444268888899*****************99865 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00018      0.27       2      36 ..      22      56 ..      21      73 .. 0.85
   2 ?    0.6   0.0      0.28   4.2e+02     150     183 ..      54      91 ..      51     101 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                EEEEEBTTBHHHHHHHHHHHHHHHHCCTEEEEEEE CS
        DSBA  2 vdeffDvlCPyCylgkerleklaarspdvkvvlrp 36
                v+ ff v C+ C++ ++ +ek a+++p++ +v+ +
  CCD24546.1 22 VVDFFAVWCGPCKMIAPMIEKFAEQYPQADFVKLD 56
                667999********************988887654 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.28
                 HHHHHHHHHHHHHTT-SSSSEEEE..TTC..EEEESSS CS
        DSBA 150 keavrentaaaqslgvtGvPtvvv..dgk..rmvfGad 183
                 k +v+e  + aq+  v+  Pt v+  +gk    v Ga 
  CCD24546.1  54 KLDVDELSEVAQKNEVSSMPTLVFfkNGKeiTRVIGAN 91 
                 55677777788888888888888877776665666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 808.24
//
Query:       CCD24547.1  [L=421]
Description: hypothetical protein NDAI_0D02330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-36  123.9   0.1    6.8e-36  123.2   0.1    1.3  1  MMR_HSR1_C      GTPase of unknown function C-terminal
    4.2e-20   71.9   0.0    9.3e-20   70.8   0.0    1.6  1  MMR_HSR1        50S ribosome-binding GTPase
    1.1e-07   31.5   0.1    2.6e-06   27.0   0.0    2.4  2  FeoB_N          Ferrous iron transport protein B
    0.00098   19.2   0.0     0.0059   16.7   0.0    2.3  3  Dynamin_N       Dynamin family
    0.00099   18.7   0.1       0.31   10.5   0.1    2.5  2  GTP_EFTU        Elongation factor Tu GTP binding domain
     0.0052   16.2   0.1          2    7.7   0.0    2.2  2  FtsK_SpoIIIE    FtsK/SpoIIIE family
     0.0066   16.3   0.2        3.1    7.5   0.0    2.2  2  ATP_bind_1      Conserved hypothetical ATP binding protein
  ------ inclusion threshold ------
      0.019   14.9   1.3        2.9    7.8   0.0    2.6  3  RsgA_GTPase     RsgA GTPase
      0.036   14.0   0.0      0.084   12.8   0.0    1.6  1  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.086   12.3   0.0       0.23   10.9   0.0    1.7  2  KTI12           Chromatin associated protein KTI12
      0.091   11.7   0.2       0.85    8.5   0.0    2.3  2  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
       0.13   12.1   0.1        1.2    8.9   0.0    2.3  2  AAA_29          P-loop containing region of AAA domain
       0.14   12.7   0.0       0.48   10.9   0.0    1.9  2  ABC_tran        ABC transporter


Domain annotation for each model (and alignments):
>> MMR_HSR1_C  GTPase of unknown function C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2   0.1     5e-39   6.8e-36       1     112 []     234     346 ..     234     346 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 5e-39
  MMR_HSR1_C   1 alNKaDlpaadenieklkekypkdkkvvpvsAaaElaLrkaakqglikYepgdedfeiked...klkeldekqkkaLekirdlvlkrygsTGVqealna 96 
                 alNK+D+p+ad+n++k++ kyp++k +v++sA +E++Lrk++kqg+ikYe+g+e++++ ed   +lk+ldek+ +++e+irdlvl+r+gsTGV+++l+a
  CCD24547.1 234 ALNKMDHPDADKNVSKIMLKYPNTK-AVLTSAITEVFLRKLKKQGFIKYEEGTEFIDTYEDdpeNLKPLDEKLLNRIENIRDLVLYRFGSTGVVQVLQA 331
                 89********************887.********************************88889999********************************* PP

  MMR_HSR1_C  97 avfelldlivVYPVed 112
                 a   +ldli+VY V++
  CCD24547.1 332 AA-GVLDLIPVYTVKN 346
                 **.***********97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   6.7e-23   9.3e-20       2      91 ..       7     140 ..       6     168 .. 0.77

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 6.7e-23
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE...................................EEEEECGGCSSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke...................................ielvDtpGliegaseekg 65 
                 ++ivG+p +GKSt++n+lt+++a v+++p++T+d+n+++  l+  +                                   i l+D++Gl+ ga++++g
  CCD24547.1   7 IGIVGKPSSGKSTMLNSLTDANAAVGAFPFCTIDPNQATGYLEV-DcacsrfkdtedkgekmmslckpnygwcdhgkrhipIMLLDVAGLVPGAHSGRG 104
                 89************************************977431.123333334445566677777777777777777777********999******* PP

                 HHHHHHHHHC.TSEEEEEEETT.........TTCSH CS
    MMR_HSR1  66 lgkaflalee.adlillvvdas.........eeklk 91 
                 lg++fl+  + ad++++vvd+s         +++++
  CCD24547.1 105 LGNKFLDDLRhADALIHVVDVSgttdsegknTRGYD 140
                 *******88879********8866655544322444 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.9e-09   2.6e-06       3      40 ..       7      44 ..       6      55 .. 0.89
   2 ?    1.6   0.1      0.13   1.7e+02     105     122 ..     228     245 ..     219     276 .. 0.67

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.9e-09
                EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEE CS
      FeoB_N  3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkeg 40
                + +vG+p +Gk+t++n+lt+a+  vg +p  t++ +++
  CCD24547.1  7 IGIVGKPSSGKSTMLNSLTDANAAVGAFPFCTIDPNQA 44
                578******************************97765 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.13
                 TSSEEEEEETHHHHHHTT CS
      FeoB_N 105 gvpvvlalnmideaekkg 122
                 + p+vlaln++d+ ++++
  CCD24547.1 228 KFPTVLALNKMDHPDADK 245
                 5799********865443 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.3e-06    0.0059       1      25 [.       7      31 ..       7      72 .. 0.84
   2 ?   -2.3   0.0       2.9     4e+03     123     139 ..     110     126 ..      77     147 .. 0.64
   3 ?   -1.2   0.0       1.3   1.8e+03      26      71 ..     256     304 ..     218     318 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.3e-06
                EEEEEBTTTTHHHHHHHHHTS--S- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilp 25
                i +vG+ SsGKS++ln+L+ ++  +
  CCD24547.1  7 IGIVGKPSSGKSTMLNSLTDANAAV 31
                789***************9888544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.9
                 HHHHSTTEEEEEEEETT CS
   Dynamin_N 123 keyikkadiilavtsan 139
                    +++ad++++v++ +
  CCD24547.1 110 LDDLRHADALIHVVDVS 126
                 44456666666666654 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 1.3
                 --SSS---S-EEEEECCT---CCS...SSEEEE.....T-EB--CHHHHHH CS
   Dynamin_N  26 rgpnptTrrplelqlgeeeeaseravkeelkek.....ekkledfsevree 71 
                 + + + T +++e+ l++ ++  +++ k+e + +     e++ e+++ ++e+
  CCD24547.1 256 NTKAVLTSAITEVFLRKLKK--QGFIKYEEGTEfidtyEDDPENLKPLDEK 304
                 44556677777777766665..22333332222443344444444444444 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0076        10       6      28 ..       7      29 ..       3      34 .. 0.86
   2 !   10.5   0.1   0.00023      0.31     113     148 ..     219     254 ..     215     351 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0076
                EEEEESTTSSHHHHHHHHHHHTT CS
    GTP_EFTU  6 igiighvDhGKtTLtdrLlyktg 28
                igi+g   +GK+T++ +L+ ++ 
  CCD24547.1  7 IGIVGKPSSGKSTMLNSLTDANA 29
                89****************97665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00023
                 HHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHH CS
    GTP_EFTU 113 evlrlalkegvpiivfiNKmDrlkaelkeiveevkq 148
                 +v++    e+ p+++++NKmD+++a+ + ++ ++k+
  CCD24547.1 219 KVVKAFMMEKFPTVLALNKMDHPDADKNVSKIMLKY 254
                 688889999**************7666655555554 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0014         2      44      59 ..       9      24 ..       5      36 .. 0.90
   2 !    6.2   0.0    0.0041       5.6     107     200 ..     256     349 ..     224     351 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0014
                  EE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE 44 vaGatgsGKStalntL 59
                  ++G + sGKSt+ln+L
    CCD24547.1  9 IVGKPSSGKSTMLNSL 24
                  89************98 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0041
                   HHHHHHHHHHHHHH.HHHHHTT-SSHHHHHHHHHHHHHTT---B-TT-......................-----------B--.---EEEEEEC- CS
  FtsK_SpoIIIE 107 raleeLvkemeery.alfreagvrsiaaydgeiaedpldifgdvflvlDnyddlaaeneritsLsnqgpsygvhvlvtagrele.krpslvvivde 200
                   ++ + L++++ e++ ++++++g+ + + + + i ++++d ++     lD++   + en r  +L   g+ ++v+vl +a++ l  ++ + v+++  
    CCD24547.1 256 NTKAVLTSAITEVFlRKLKKQGFIKYEEGTEFIDTYEDDPEN--LKPLDEKLLNRIENIRDLVLYRFGSTGVVQVLQAAAGVLDlIPVYTVKNIQT 349
                   677889999999999*************99999999999654..334588888888888**********************999899998888865 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0022       3.1       1      23 [.       9      31 ..       9      45 .. 0.85
   2 !    6.7   0.1    0.0041       5.6     149     192 ..     221     263 ..     215     294 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0022
  ATP_bind_1  1 vvGpaGsGKttfvgalseilelr 23
                +vG ++sGK+t+ ++l++   + 
  CCD24547.1  9 IVGKPSSGKSTMLNSLTDANAAV 31
                79**************9876665 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0041
  ATP_bind_1 149 lsamlrlelPhvvvlnkfDllkeklekeleffedvealslllek 192
                 ++a ++ + P+v +lnk+D  +  ++   + +    + +++l++
  CCD24547.1 221 VKAFMMEKFPTVLALNKMDHPD-ADKNVSKIMLKYPNTKAVLTS 263
                 566778899***********55.455555666655555555554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.011        15     104     124 ..       9      28 ..       3      38 .. 0.81
   2 ?   -4.1   0.1       9.6   1.3e+04     139     148 ..     171     180 ..     168     185 .. 0.58
   3 ?    7.8   0.0    0.0021       2.9      32      93 ..     214     273 ..     209     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.011
                  EECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase 104 lvGqSGvGKStLinallpele 124
                  +vG+   GKSt++n+l+   +
   CCD24547.1   9 IVGKPSSGKSTMLNSLTDA-N 28 
                  7899999*********986.3 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 9.6
                  ----SEEEEE CS
  RsgA_GTPase 139 hTTtavelle 148
                  hT t++++++
   CCD24547.1 171 HTATKSSIVD 180
                  6666655543 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0021
                  HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHH CS
  RsgA_GTPase  32 lnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleel 93 
                   + +++++ ++  ++ + v++lnK+D  + ++++++++ ++ ++  + +l+sa t+  l++l
   CCD24547.1 214 DEWITKVVKAFMMEKFPTVLALNKMDHPDADKNVSKIMLKYPNT--KAVLTSAITEVFLRKL 273
                  5678899999999******************9888888887766..6666666666555555 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.1e-05     0.084       5      26 ..       6      27 ..       2      33 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.1e-05
  Ploopntkinase3  5 liylvGqPGaGkstlmaeltkg 26
                    li +vG+P +Gkst++ +lt++
      CCD24547.1  6 LIGIVGKPSSGKSTMLNSLTDA 27
                    899*****************86 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00017      0.23       2      24 ..       5      27 ..       4      66 .. 0.88
   2 ?   -2.3   0.0       1.7   2.4e+03     218     251 ..     251     282 ..     215     294 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
                .EEEEE--TTSSHHHHHHHHHHH CS
       KTI12  2 pLvvltGlPssGKstrakeLaka 24
                pL+ + G PssGKst+ + L +a
  CCD24547.1  5 PLIGIVGKPSSGKSTMLNSLTDA 27
                9***************9999876 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
                 HHH................HHHHHHHHHH.HHHHH CS
       KTI12 218 kltlpgsseslelpakkltlaeLsrlrrq.Fvkln 251
                 +l++p+++ +l  +   +t   L++l++q F+k+ 
  CCD24547.1 251 MLKYPNTKAVLTSA---ITEVFLRKLKKQgFIKYE 282
                 33345554333333...334444455444466665 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00062      0.85      31      57 ..       6      32 ..       2      46 .. 0.80
   2 ?    0.1   0.0      0.23   3.2e+02     160     189 ..     220     250 ..     214     268 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00062
                EEEEEE-TTSSHHHHHHHHHHHHHCTT CS
        MeaB 31 vvGltGvPGaGkstlvealglelrrrG 57
                 +G+ G P +Gkst+++ l+   ++ G
  CCD24547.1  6 LIGIVGKPSSGKSTMLNSLTDANAAVG 32
                69***************9987655555 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.23
                 T--CCCHH.H-SEEEEE---HHHHHHHHHHH CS
        MeaB 160 gikkGile.iaDiivvnkaDkkeaekaarel 189
                 ++k+ ++e    ++++nk D+++a+k   ++
  CCD24547.1 220 VVKAFMMEkFPTVLALNKMDHPDADKNVSKI 250
                 567777774567999*******999977655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00087       1.2      27      42 ..       9      24 ..       2      31 .. 0.84
   2 ?   -0.1   0.0      0.58     8e+02      35      44 ..     175     184 ..     167     188 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00087
      AAA_29 27 ltGpsGsGKSTllDAi 42
                ++G+  sGKST+l ++
  CCD24547.1  9 IVGKPSSGKSTMLNSL 24
                89**********9765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.58
      AAA_29  35 KSTllDAiqa 44 
                 KS+++D +q+
  CCD24547.1 175 KSSIVDTLQT 184
                 9*****9997 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00035      0.48      12      33 ..       5      26 ..       1      33 [. 0.87
   2 ?   -1.6   0.0       2.7   3.7e+03      79      97 ..     181     229 ..     125     248 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00035
                SEEEEEESTTSSHHHHHHHHTT CS
                xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 12 ekvaivGenGaGKStLlkllag 33
                 +++ivG+  +GKSt+l+ l+ 
  CCD24547.1  5 PLIGIVGKPSSGKSTMLNSLTD 26
                579***************9985 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.7
                 H..............................HHHTCHHHHHHHSTTGGT CS
                 x..............................xxxxxxxxxxxxxxxxxx RF
    ABC_tran  79 n..............................esdeeiekalsklglkel 97 
                 +                              ++de+i+k+++ + ++++
  CCD24547.1 181 TlqtqfggygslapmvqralatlkglpplesWDDEWITKVVKAFMMEKF 229
                 1344444444444444445555555666666777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      646  (0.036031); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3022.16
//
Query:       CCD24548.1  [L=480]
Description: hypothetical protein NDAI_0D02340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-13   50.0   5.2    2.1e-13   50.0   5.2    2.8  3  RSF       Respiratory growth transcriptional regulator


Domain annotation for each model (and alignments):
>> RSF  Respiratory growth transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.1   8.4         1   1.8e+04     272     272 ..     106     106 ..      38     134 .. 0.60
   2 !   50.0   5.2   1.2e-17   2.1e-13     135     256 ..     219     347 ..     169     368 .. 0.82
   3 ?   -5.4  10.4      0.77   1.4e+04     349     378 ..     423     451 ..     404     452 .. 0.77

  Alignments for each domain:
  == domain 1  score: -10.1 bits;  conditional E-value: 1
         RSF 272 t 272
                 +
  CCD24548.1 106 Q 106
                 1 PP

  == domain 2  score: 50.0 bits;  conditional E-value: 1.2e-17
         RSF 135 setlnlrsdimkslelpvpkrrdik...gnhlskllfakspltintycqfydrrt....kricnqemiwkdknsrekhgsrkyqrhlskvhdvqltpqn 226
                 s++ ++ s + k l l +p +  +k    n ++k++fa    + n  cqfyd         icn+ +    k  + +  +rk + hl   hd+++ p+n
  CCD24548.1 219 SHLTTFPSSLSKRLSLIIPSKTTLKkksANTFAKFIFAEDRYSDNLICQFYDPNNtnedSSICNKIIKMSSKSIKRRTQARKCKDHLRLEHDIEINPNN 317
                 56678999************99987444699*********************653122258*****999****************************** PP

         RSF 227 fteffdhnsplfqecydyqsrlmrdllvep 256
                 + ++++hns lf++ y  ++      lve 
  CCD24548.1 318 YLHYLNHNSELFKKAYTTKTLANVKPLVES 347
                 ****************98776655556665 PP

  == domain 3  score: -5.4 bits;  conditional E-value: 0.77
         RSF 349 gvnelehnrnesssnlsnsisstphnhnqn 378
                   n    n n++ +n +n++ + phn ++n
  CCD24548.1 423 SANAPVNN-NNNGNNSNNNNNNIPHNIDRN 451
                 55554444.7788899999999****9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2746  (0.15316); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.31s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3365.50
//
Query:       CCD24549.1  [L=486]
Description: hypothetical protein NDAI_0D02350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.4e-115  380.2   4.5    4.3e-57  192.4   0.8    2.2  2  zf-ZPR1          ZPR1 zinc-finger domain
     0.0011   19.0   2.8       0.73    9.9   0.5    2.6  2  HypA             Hydrogenase/urease nickel incorporation, met
  ------ inclusion threshold ------
       0.11   12.7   0.2       0.45   10.7   0.1    2.0  2  DUF2294          Uncharacterized conserved protein (DUF2294)
       0.16   12.9   2.0        2.2    9.2   0.5    2.8  3  Cytochrom_C_2    Cytochrome C'
       0.21   11.6   6.1       0.31   11.0   1.0    2.7  2  zinc-ribbons_6   zinc-ribbons
       0.72   10.0   6.7        1.8    8.7   0.4    2.9  2  zf-RRPl_C4       Putative ribonucleoprotein zinc-finger pf C4
        6.9    6.7   7.1         18    5.3   0.0    3.3  3  OrfB_Zn_ribbon   Putative transposase DNA-binding domain
        8.9    6.2  14.7        6.1    6.7   0.6    4.3  4  zinc_ribbon_2    zinc-ribbon domain
        9.2    6.4  12.8        4.3    7.4   2.3    3.6  3  DZR              Double zinc ribbon


Domain annotation for each model (and alignments):
>> zf-ZPR1  ZPR1 zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.4   0.8   2.2e-60   4.3e-57       1     159 []      51     209 ..      51     209 .. 0.95
   2 !  189.3   0.2   1.9e-59   3.8e-56       1     159 []     292     451 ..     292     451 .. 0.93

  Alignments for each domain:
  == domain 1  score: 192.4 bits;  conditional E-value: 2.2e-60
     zf-ZPR1   1 slCpsCgkengetrllltkiPyfkeviimsfeCehCgyknnevksageieekGkritlkveseedlnrqvlkSetatveipeleleippgtlegrlttv 99 
                 slC++C+ +ng+trlllt+iPyf+ev++msfeC+hCg kn+e+++a++i+ekG ++ lkve++ed+nr+v+kSeta++++ el++eipp  ++g+lttv
  CCD24549.1  51 SLCMNCH-KNGTTRLLLTSIPYFREVVLMSFECPHCGLKNSEIQPASTIQEKGAKYLLKVECKEDFNREVIKSETASCKFVELDIEIPP--KRGQLTTV 146
                 58****7.99*******************************************************************************..******** PP

     zf-ZPR1 100 EGlLeqikeelekeegdqaer..ed.eekekieeflekleeliegee...pftlildDpagnSfie 159
                 EGlL++++++l   ++dq+ r   d + +++i+++++k++++i+ e    p+t+ildDpagnS+ie
  CCD24549.1 147 EGLLSEMIDDL---QSDQEMRkkIDeNLYNQIDAVIKKVRSYINCEPntvPLTFILDDPAGNSWIE 209
                 ***********...77888885523479****************775899**************96 PP

  == domain 2  score: 189.3 bits;  conditional E-value: 1.9e-59
     zf-ZPR1   1 slCpsCgkengetrllltkiPyfkeviimsfeCehCgyknnevksageieekGkritlkveseedlnrqvlkSetatveipeleleippgtlegrlttv 99 
                 s+CpsC   ++et+++ ++iP+fkevi+ms++C+hCgyk+nevk++g+i+ekG++itl +++++dl+r++lkSet+++++pel l+i++gtl+gr+tt+
  CCD24549.1 292 SSCPSCT-TECETHMKPVNIPHFKEVILMSTVCDHCGYKSNEVKTGGAIPEKGRKITLYCDDPADLSRDILKSETCSMTVPELHLDIQEGTLGGRFTTL 389
                 58****5.88***************************************************************************************** PP

     zf-ZPR1 100 EGlLeqikeele....keegdqaeredeekekieeflekleeliegeepftlildDpagnSfie 159
                 EG+L+q+++ele    ++++d++++  ++ke++ +f+ +l+e+i+g+ +ft+i+ Dp++ S+i+
  CCD24549.1 390 EGILKQVYDELEsrvfSQTSDSMDE--ATKERWVSFFGRLKEAIAGKVKFTVIMVDPLAGSYIQ 451
                 ***********96432223444443..67**********************************7 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1     0.001       2.1      67     100 ..      47      93 ..      30     100 .. 0.81
   2 !    9.9   0.5   0.00037      0.73      62     102 ..     283     336 ..     268     340 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.001
                 E--EEEETTTS-EEECHHHHH...............S-TTTSSS-EEEE CS
        HypA  67 vpvkvrCreCgkefeleekal...............rCpkCgsadveiv 100
                 ++++  C +C+k+++++   l               +Cp+Cg ++ ei+
  CCD24549.1  47 QEIESLCMNCHKNGTTRL--LltsipyfrevvlmsfECPHCGLKNSEIQ 93 
                 677889*****9999774..12456889999***********9998886 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00037
                 EEEEEE--EEEETTTS-EEECHHHHH.............S-TTTSSS-EEEEES CS
        HypA  62 LeieevpvkvrCreCgkefeleekal.............rCpkCgsadveivsG 102
                 ++ e +  +  C +C +e e++ k +              C +Cg ++ e+++G
  CCD24549.1 283 FSNEVQTFRSSCPSCTTECETHMKPVniphfkevilmstVCDHCGYKSNEVKTG 336
                 55677888999*********8765124588999**************9999998 PP

>> DUF2294  Uncharacterized conserved protein (DUF2294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00023      0.45      42      84 ..     140     182 ..     113     185 .. 0.84
   2 ?   -1.9   0.0       1.8   3.6e+03      61      93 ..     392     424 ..     387     428 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00023
     DUF2294  42 egvlTpaEkfLaetkeGrelvkqvRteLveeikpelkelieei 84 
                 +g lT++E +L+e  +  ++ +++R++++e++++++ ++i+++
  CCD24549.1 140 RGQLTTVEGLLSEMIDDLQSDQEMRKKIDENLYNQIDAVIKKV 182
                 689*************************************987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.8
     DUF2294  61 lvkqvRteLveeikpelkelieeitgvkvisll 93 
                 ++kqv  eL   + ++  + + e t+ + +s++
  CCD24549.1 392 ILKQVYDELESRVFSQTSDSMDEATKERWVSFF 424
                 578888888888888888888888888877776 PP

>> Cytochrom_C_2  Cytochrome C'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.5    0.0011       2.2      76     119 ..      15      59 ..       4      59 .. 0.81
   2 ?    1.5   0.0      0.26   5.2e+02      94     116 ..     275     297 ..     242     300 .. 0.90
   3 ?   -2.1   0.0       3.6   7.1e+03      20      51 ..     389     422 ..     381     435 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
                    HHHHHHHHHHHHHHHH.HHHHCTSHHHHHHHHHHHHHHHHHHHHH CS
  Cytochrom_C_2  76 fkakaaaleeaaaeLa.aaakagdlaalkaafgkvgksCkaCHdk 119
                    + ++a+++++++++    ++++g ++a+   ++++++ C +CH++
     CCD24549.1  15 VGEAAQEIQDETTAPDdGVTATGAEDAMGHPVQEIESLCMNCHKN 59 
                    45667777777777776777889999*****************85 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.26
                    HHCTSHHHHHHHHHHHHHHHHHH CS
  Cytochrom_C_2  94 akagdlaalkaafgkvgksCkaC 116
                    ++a+d +++ +++++ ++sC +C
     CCD24549.1 275 SDATDIENFSNEVQTFRSSCPSC 297
                    5678999**************** PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.6
                    HHHHH.TTSST--HHHHHHHHHHHHHHHCSGG.G CS
  Cytochrom_C_2  20 lgaml.kgeapydaeavaaaaealaalakklp.a 51 
                    l+++l + + + + + +++  +++++++k+ + +
     CCD24549.1 389 LEGILkQVYDELESRVFSQTSDSMDEATKERWvS 422
                    5555533334555666666666666666666634 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.4     0.085   1.7e+02       3      37 ..      53      87 ..      49     121 .. 0.70
   2 ?   11.0   1.0   0.00016      0.31       2      47 ..     293     338 ..     292     341 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.085
                    -SSS-S--EE-SSEEE-TTT--EEEEEEE-SSS-S CS
  zinc-ribbons_6  3 CpeCqqelekrgeqyhCeaCqedlkkealCpeCeq 37
                    C +C+++ ++r   ++    +e + +   Cp+C+ 
      CCD24549.1 53 CMNCHKNGTTRLLLTSIPYFREVVLMSFECPHCGL 87
                    77777777777645555555555666666666654 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00016
                     --SSS-S--EE-SSEEE-TTT--EEEEEEE-SSS-S---EEEETTE CS
  zinc-ribbons_6   2 kCpeCqqelekrgeqyhCeaCqedlkkealCpeCeqelevlkaCga 47 
                     +Cp+C +e e++ + ++  + +e + + ++C++C+ + + +k  ga
      CCD24549.1 293 SCPSCTTECETHMKPVNIPHFKEVILMSTVCDHCGYKSNEVKTGGA 338
                     6**********************************99999998888 PP

>> zf-RRPl_C4  Putative ribonucleoprotein zinc-finger pf C4 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.3      0.05        99      33      90 ..      62     115 ..      43     129 .. 0.54
   2 ?    8.7   0.4   0.00088       1.8      48      92 ..     287     332 ..     254     362 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.05
  zf-RRPl_C4  33 ekqkvelvpik.elekislrdkLCtkCkeknekekeircetfeeylkklklCkeCkerv 90 
                 ++   +++p + e   + l +  C +C  kn++  +  ++t++e  +k  l  eCke+ 
  CCD24549.1  62 TRLLLTSIPYFrE---VVLMSFECPHCGLKNSE--IQPASTIQEKGAKYLLKVECKEDF 115
                 3333333443333...33344457777776666..334556677777777777777664 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00088
  zf-RRPl_C4  48 islrdkLCtkCkeknekeke.ircetfeeylkklklCkeCkervek 92 
                 +   +  C +C+++ e++ + ++  +f+e +   ++C++C  ++++
  CCD24549.1 287 VQTFRSSCPSCTTECETHMKpVNIPHFKEVILMSTVCDHCGYKSNE 332
                 4444677999999999988889999999999999999999877665 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.009        18      28      41 ..      79      99 ..      72     122 .. 0.68
   2 ?   -1.2   3.9      0.98   1.9e+03      28      39 ..     320     331 ..     285     332 .. 0.73
   3 ?    3.5   0.4     0.033        66      28      40 ..     320     332 ..     314     352 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.009
  OrfB_Zn_ribbon 28 SktCseCgsknke.......a 41
                    S +C++Cg kn+e       +
      CCD24549.1 79 SFECPHCGLKNSEiqpastiQ 99
                    678999999999976554442 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.98
  OrfB_Zn_ribbon  28 SktCseCgsknk 39 
                     S+ C +Cg+k++
      CCD24549.1 320 STVCDHCGYKSN 331
                     666666666654 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.033
  OrfB_Zn_ribbon  28 SktCseCgsknke 40 
                     S+ C +Cg+k++e
      CCD24549.1 320 STVCDHCGYKSNE 332
                     8899999999998 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.038        76       6      20 ..      43      57 ..      43      61 .. 0.83
   2 ?    6.7   0.6     0.003       6.1       2      11 ..      82      91 ..      81      94 .. 0.86
   3 ?    0.7   0.4      0.23   4.6e+02       2       8 ..     294     300 ..     286     306 .. 0.74
   4 ?    2.9   0.2     0.049        98      16      22 ..     323     329 ..     320     332 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.038
  zinc_ribbon_2  6 GaelqdnakFCpyCG 20
                   G+++q+ +  C +C 
     CCD24549.1 43 GHPVQEIESLCMNCH 57
                   8899999999****4 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.003
  zinc_ribbon_2  2 CpnCGaelqd 11
                   Cp+CG ++++
     CCD24549.1 82 CPHCGLKNSE 91
                   9****99976 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.23
  zinc_ribbon_2   2 CpnCGae 8  
                    Cp+C +e
     CCD24549.1 294 CPSCTTE 300
                    6666555 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.049
  zinc_ribbon_2  16 CpyCGtp 22 
                    C +CG++
     CCD24549.1 323 CDHCGYK 329
                    6666654 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   2.8      0.25   4.9e+02      28      37 ..      50      59 ..      24      86 .. 0.65
   2 ?   -0.9   3.5      0.89   1.8e+03      15      19 ..      82      86 ..      53     113 .. 0.64
   3 ?    7.4   2.3    0.0022       4.3      14      38 ..     293     330 ..     284     337 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.25
         DZR 28 edrCpsCgek 37
                e  C++C++ 
  CCD24549.1 50 ESLCMNCHKN 59
                6778888765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.89
         DZR 15 CseCg 19
                C++Cg
  CCD24549.1 82 CPHCG 86
                44444 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0022
         DZR  14 fCseCgtklkavaa.............edrCpsCgekv 38 
                  C+ C t+ +   +             +++C++Cg+k 
  CCD24549.1 293 SCPSCTTECETHMKpvniphfkevilmSTVCDHCGYKS 330
                 69999998774444788899******9********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3392.35
//
Query:       CCD24550.1  [L=470]
Description: hypothetical protein NDAI_0D02360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-67  228.8   5.0    1.3e-67  228.5   5.0    1.0  1  AATase          Alcohol acetyltransferase
    1.3e-05   24.0   0.3     0.0018   17.0   0.1    2.1  2  Condensation    Condensation domain
  ------ inclusion threshold ------
       0.01   15.6   0.0       0.02   14.7   0.0    1.4  1  WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransfer
      0.066   13.4   0.5        2.3    8.5   0.2    2.9  3  eIF_4G1         Eukaryotic translation initiation factor 4G1


Domain annotation for each model (and alignments):
>> AATase  Alcohol acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.5   5.0   2.8e-71   1.3e-67       3     484 ..       8     457 ..       6     465 .. 0.91

  Alignments for each domain:
  == domain 1  score: 228.5 bits;  conditional E-value: 2.8e-71
      AATase   3 GslEkyfvvrnrqklysnfsvyaelnkevdkeqLalalrslilknpiLaaniipkkfpeheayyssdeyyskPfpkeDyvkviekiklddvvlneqpey 101
                  slE++f+ r+  +l+s+f     ln  + k+qL+ al+  i  +p+L +ni +   ++ ++y   ++  ++P            i+++dvv       
  CCD24550.1   8 SSLENFFYHRSEVNLHSCFYLALLLNALPAKKQLYKALQDTIATYPQLHQNITK---NKEDEYLYVEDIKKTP------------IEFEDVV------- 84 
                 589**************************************************8...9999************............*******....... PP

      AATase 102 sellekileeykdddekvdeelnellselvipvgdpkkPlwrlivlpsaddkkkwkkfvfitdHllfDGisgvnffkdlleelekikqdnalkkdevil 200
                          e+  +++  ++e+n++++ +++ + +++ Plw+++v+ps       + f+   dH lfDGis+v++++  +e+l+k+++ + +++   ++
  CCD24550.1  85 ---------EFVAWEKFEEKEINSIFQTYNFHYRNDR-PLWKILVVPSL------NTFILLLDHALFDGISAVKIWETFMEKLNKSSEIENIDVTVPLY 167
                 .........9***999999******************.**********6......99*******************************99977777777 PP

      AATase 201 dy.......ekdveele.kLPkpieekvdy..rpsllalpklllvsfiasklnfkks.......eekpltkehsavqksnkshqiilkispeevkkira 282
                  +           ++++   P pi +kv+     +l++  + +++s   +  +fk +       +++p        +  n + q+ +k+ p +++ i +
  CCD24550.1 168 IPeenhegtLVASQHPYdIWPVPIAWKVKSfiATKLFNWYPQAIISPNSNLFEFKGYkfpegflSQYPKD-GVTSFKVRNDNTQKLIKMAPGKLETILK 265
                 77444443312234555578999******999999***********999999999999999987666666.777888999999**************** PP

      AATase 283 kikknvhgkatlTpflqavffvalyklgklfkeknsevsidvaipvntRrylpedeev.rdsykYgtvvggseFsylissldieedskeklwelveeyh 380
                 ++k n    ++lT+++ a++++al ++    +e++ +  ++v ip+ntR+   ++ ++  ++ + g +vg ++F     +  i+ ds   +w+ +   +
  CCD24550.1 266 NCKTN---AVSLTSYIVAIIIIALRNV---TQESYTGNLLKVSIPINTRNICANQVNTpEEMLQLGNFVGSMDF-----EHPINSDS--GIWDIARDVQ 351
                 *****...******************7...89*********************9988834789***********.....33343355..89******** PP

      AATase 381 krlseslsngkelkglgtlildl.llkyvnidkllkkkilktk...rstaevsNlGlfsq....eeeskykvkdliFsqaagslknafslnvistnsgG 471
                 + +++     + ++g+ + i+++ ll+ +n+++++kkki+  +    st+ev+NlG++s+     e+s+y +kd++F++++g ++  f+ +vist++gG
  CCD24550.1 352 QFITK-----NTTVGISDIINNIkLLDGINCEEFVKKKIEFSSngpASTFEVTNLGFQSFkgscMESSSYFIKDAVFNEPQG-MSDIFTCSVISTPIGG 444
                 ****9.....999***************************99878899************999999****************.**************** PP

      AATase 472 lnlslsvvedlls 484
                 l +sls+++d  +
  CCD24550.1 445 LRCSLSYPKDIAQ 457
                 ********99876 PP

>> Condensation  Condensation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   4.1e-07    0.0018      41     156 ..      38     149 ..       9     170 .. 0.77
   2 !    5.3   0.0    0.0015       6.6     223     321 ..     246     353 ..     228     416 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.1e-07
                   HHHHHHHHHHHHHH-SSCCEEEEE..TTEEEEEE-TT-----EEEE-T..TSSS..HHHHHHHHHHHHHTC--SCCCS.-SEEEEEEESSTTEEEEE CS
  Condensation  41 lerlekalqelierhdaLRtvfleeengepvQvileerevelevleisdleese..eeeaieefaqkdlqepfdLekg.pLfraalfkiaenrllll 134
                   ++ l kalq  i  ++ L   ++++ +++ ++++++ +++++e++++ +  + e  ee+ i+++ q     +f  +++ pL+++ ++  + n + ll
    CCD24550.1  38 KKQLYKALQDTIATYPQLHQNITKN-KEDEYLYVEDIKKTPIEFEDVVEFVAWEkfEEKEINSIFQT---YNFHYRNDrPLWKILVVP-SLNTFILL 129
                   56899*****************755.9999*****99999999888876544331135569999994...788888888********9.9999*999 PP

                   EEEECCT--TTTHHHHHHHHHH CS
  Condensation 135 lsvHHiivDGvSlgillrdlak 156
                   l+  H ++DG+S   + + +++
    CCD24550.1 130 LD--HALFDGISAVKIWETFME 149
                   99..9*******7766666654 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0015
                   --S-EEEEEEEE-S-HHHHHHHHSTSS-HHHHHHHHHHHHHHHHHT-SE....EEEEEEEESSTT...CSTCHHC-..-SS-EEEEEEEEE--TT-B CS
  Condensation 223 fkadrlsikldeeteeklrklakeqgvtlndvllaalgllLskytgqdd....ivvgteisgRes...eikdierm..vGlFvntlPlridvkeakt 310
                    ++ ++ ik+++   e++ k +k + v+l++   a+  ++L  +t+++     + v+++i  R+    ++++ e+m  +G Fv  + ++  ++ +  
    CCD24550.1 246 NDNTQKLIKMAPGKLETILKNCKTNAVSLTSYIVAIIIIALRNVTQESYtgnlLKVSIPINTRNIcanQVNTPEEMlqLGNFVGSMDFEHPINSDSG 342
                   34456778889**********************************9754111156777777777655544444554224666666666666666666 PP

                   HHHHHHHHHHH CS
  Condensation 311 fselikrvked 321
                     ++ ++v++ 
    CCD24550.1 343 IWDIARDVQQF 353
                   66666666655 PP

>> WES_acyltransf  Wax ester synthase-like Acyl-CoA acyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.5e-06      0.02     112     163 ..     111     158 ..     109     176 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.5e-06
  WES_acyltransf 112 srPlWevhviEGleggriAillkvHHAliDGvgglkllarlldldpddpprp 163
                     +rPlW++ v++ l+      +l + HAl DG++++k+ + ++++  + ++ +
      CCD24550.1 111 DRPLWKILVVPSLNT----FILLLDHALFDGISAVKIWETFMEKLNKSSEIE 158
                     8**********9985....577899****************99887766655 PP

>> eIF_4G1  Eukaryotic translation initiation factor 4G1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.095   4.2e+02      14      28 ..     146     160 ..     143     165 .. 0.88
   2 ?    8.5   0.2   0.00051       2.3      32      61 ..     206     234 ..     183     241 .. 0.85
   3 ?   -2.1   0.0         1   4.6e+03      30      38 ..     448     456 ..     429     462 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.095
     eIF_4G1  14 aflesLksArpiedi 28 
                  f+e+L+++++ie+i
  CCD24550.1 146 TFMEKLNKSSEIENI 160
                 69***********98 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00051
     eIF_4G1  32 kYPegiesPdpalnkeakkyrYdpdFLLQF 61 
                  YP+ i sP+++l  e k y++  +FL Q+
  CCD24550.1 206 WYPQAIISPNSNLF-EFKGYKFPEGFLSQY 234
                 5***********99.8888********997 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1
     eIF_4G1  30 svkYPegie 38 
                 s++YP++i+
  CCD24550.1 448 SLSYPKDIA 456
                 589***997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3477.36
//
Query:       CCD24551.1  [L=338]
Description: hypothetical protein NDAI_0D02370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-62  211.0  12.9    1.4e-62  211.0  12.9    1.3  2  RTA1      RTA1 like protein
  ------ inclusion threshold ------
        1.2    9.4   5.4        1.9    8.8   1.1    2.7  2  DUF4257   Protein of unknown function (DUF4257)


Domain annotation for each model (and alignments):
>> RTA1  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.3       1.3   1.1e+04     144     154 ..      30      40 ..      22      48 .. 0.50
   2 !  211.0  12.9   1.6e-66   1.4e-62       1     198 [.      84     285 ..      84     294 .. 0.96

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 1.3
        RTA1 144 llalyaavlli 154
                 ++++++++++i
  CCD24551.1  30 IILFAISSVAI 40 
                 23333333333 PP

  == domain 2  score: 211.0 bits;  conditional E-value: 1.6e-66
        RTA1   1 lilGcileviGYigRilsakntskaslgpfiiqivllllaPafiaaaiYmllgrlilll.geelsllrpklytkiFvvlDvvslllqaaGGglaasass 98 
                 li+Gci+e+iGYigR++s ++  k+ lgp+i+q+vlll+aP+++aa+iYml+gr+++ll +e+l+++++++ t+iFv++D+ sl++qaaGGgl+asa+s
  CCD24551.1  84 LIVGCIVELIGYIGRAISGND--KEALGPYIMQSVLLLIAPTLYAATIYMLFGRMAHLLfAESLMIMPARFNTLIFVLGDIASLFMQAAGGGLMASADS 180
                 589******************..789*********************************9*************************************99 PP

        RTA1  99 saeaklGeniiiaGlalQvvvlvvFlllaldFllrvr........kskkfkkfllalyaavlliliRsiyRvvElaeGwdgylithEvyfyvLdallil 189
                    ak G+n+++aGl++Q++++++F++  + F++rv         +  ++k + ++l++ ++liliRsi R++E++eG+dg +++hE+y+yv+d+l++ 
  CCD24551.1 181 ---AKSGSNLVTAGLFVQIAFFGLFIINEFLFIFRVGklpnpiqsRCASWKSLNMVLIVNSFLILIRSIVRAIEFIEGFDGFIASHEWYLYVFDSLPMY 276
                 ...89**************************************996678*************************************************9 PP

        RTA1 190 lavvllnvf 198
                 + +v+ +++
  CCD24551.1 277 ALTVISIAT 285
                 999987654 PP

>> DUF4257  Protein of unknown function (DUF4257)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2     0.043   3.8e+02      46      68 ..      23      45 ..      21      56 .. 0.86
   2 ?    8.8   1.1   0.00021       1.9       2      66 ..     124     189 ..     123     200 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.043
     DUF4257 46 slaaillvlssdpesllelvlls 68
                + aail ++++  +s   ++++s
  CCD24551.1 23 MGAAILFIILFAISSVAIIIFIS 45
                6799****999999999999887 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00021
     DUF4257   2 liAvliGgllGlvgHliknkgklekPkkkkkfly.lGFledlliGslaaillvlssdpesllelvl 66 
                 l+A  i  l G ++Hl+  +  +++P + ++ ++ lG ++ l++ +++  l+  +  ++s  +lv+
  CCD24551.1 124 LYAATIYMLFGRMAHLLFAESLMIMPARFNTLIFvLGDIASLFMQAAGGGLMASADSAKSGSNLVT 189
                 7999999********************977665549********9999999988877777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 2937.24
//
Query:       CCD24552.1  [L=247]
Description: hypothetical protein NDAI_0D02380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.3e-25   87.1   0.4    1.3e-13   50.6   0.0    2.4  3  Ribosomal_S2  Ribosomal protein S2
  ------ inclusion threshold ------
      0.033   15.5  11.1       0.07   14.5  11.1    1.6  1  40S_SA_C      40S ribosomal protein SA C-terminus


Domain annotation for each model (and alignments):
>> Ribosomal_S2  Ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   9.8e-13   8.8e-09       1      98 [.      17     112 ..      17     116 .. 0.90
   2 !   50.6   0.0   1.5e-17   1.3e-13     147     212 ..     116     181 ..     111     183 .. 0.94
   3 ?   -3.0   0.0       0.4   3.6e+03     149     168 ..     199     218 ..     193     235 .. 0.62

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 9.8e-13
  Ribosomal_S2   1 LLeagvhfGhqtrrwnpkmkpyIyger.ngihiidlektlaalrraykvvkevaakggkilfvgtkkqakeavkeaakrangyyvnerWlgGtLTNf 96 
                   LL+a++h+G  +r+++ + +py++++r +g+ +i++ kt ++l  a++++  +  + + ++ ++++   ++av + a+ +++  +  r+++G +TN+
    CCD24552.1  17 LLAANTHLG--ARNVQVHQEPYVFNTRpDGVNVINVGKTWEKLVLAARIIAAIP-NPEDVVAISSRTYGQRAVLKYAAHTGATPIAGRFTPGNFTNY 110
                   89*******..677788899****999679********************9765.677888999999999999999999*****************8 PP

  Ribosomal_S2  97 kt 98 
                    t
    CCD24552.1 111 IT 112
                   65 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 1.5e-17
  Ribosomal_S2 147 klPdlvvvldpkkekiavkEakklgipviaivDtnvdpdlvdypIpaNddsirsiklilgvladai 212
                   k P lv+v+dp+++  a+kEa+ +++pvia++D ++  + vd +Ip+N+    si li  +la+ +
    CCD24552.1 116 KEPRLVIVTDPRSDAQAIKEASYVNVPVIALTDLDSPSEYVDVAIPCNNRGRHSIGLIWYLLAREV 181
                   78************************************************************9987 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.4
  Ribosomal_S2 149 PdlvvvldpkkekiavkEak 168
                   Pdl +  +p++ +   +Ea+
    CCD24552.1 199 PDLYFYRNPEEAEQTTEEAT 218
                   55555555555555555554 PP

>> 40S_SA_C  40S ribosomal protein SA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5  11.1   7.8e-06      0.07       1      49 [.     202     245 ..     202     247 .] 0.71

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.8e-06
    40S_SA_C   1 fFYRdPEeiekeeqaaaekalvkkee.qeewtapveftepevadWaeegv 49 
                 +FYR+PEe+e+    a e+a  ++ee +ee t     +++ +++Waee +
  CCD24552.1 202 YFYRNPEEAEQTTEEATEEA--GEEEvKEEAT----EEQAGASEWAEEMP 245
                 9*********9988888888..4544244444....35678899995544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1737.92
//
Query:       CCD24553.1  [L=105]
Description: hypothetical protein NDAI_0D02390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-34  116.8   0.2    4.8e-34  116.5   0.2    1.1  1  MRP-S33   Mitochondrial ribosomal subunit S27


Domain annotation for each model (and alignments):
>> MRP-S33  Mitochondrial ribosomal subunit S27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   0.2   2.7e-38   4.8e-34       1      88 []       6      93 ..       6      93 .. 0.99

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 2.7e-38
     MRP-S33  1 arllelaklsarIFgevynptnlrtgsKvlrkrlkgplladYY.pprivsfkqlkkllrellkfrDeaeefrlemvalrkrRGKgapkK 88
                arll++a+lsa+IF+e++npt++rtg+K+l++rlkgp++a+YY +p++++fk+lk+l+++ ++f+D++e++rl +++++krRGKgapkK
  CCD24553.1  6 ARLLKVAELSAKIFDENFNPTGARTGAKILSQRLKGPAIASYYgNPDVLKFKHLKTLYPN-FQFTDPEENYRLAKIEAKKRRGKGAPKK 93
                69**********************************************************.***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       289  (0.0161191); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.28s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 746.19
//
Query:       CCD24554.1  [L=622]
Description: hypothetical protein NDAI_0D02400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-56  189.3  17.8      7e-56  189.3  17.8    1.8  2  Gpi1      N-acetylglucosaminyl transferase component (Gpi1)


Domain annotation for each model (and alignments):
>> Gpi1  N-acetylglucosaminyl transferase component (Gpi1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.35   6.2e+03      95     108 ..     181     194 ..     137     216 .. 0.55
   2 !  189.3  17.8   3.9e-60     7e-56       1     187 []     284     474 ..     284     474 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.35
        Gpi1  95 kllallsllGltfa 108
                 + ++l  ++G+tf+
  CCD24554.1 181 TSTGLHRFIGCTFL 194
                 44444444454443 PP

  == domain 2  score: 189.3 bits;  conditional E-value: 3.9e-60
        Gpi1   1 fnslwlilnDvllGilllslllenaeviaelieklleellvdslekllewlsgnPaGlKLNkeLasflgklflwviklwks.llesll..sllelllkl 96 
                 fn++wlilnD+ +G++l++++ ++ ++i+++++ +++ ++++ l k  ++l +nP+G+KLN+eL  fl+++flw+i+++ + ++e ++  ++l ++lk+
  CCD24554.1 284 FNTIWLILNDISFGLILAAIIGQYFDFIISMFHFVVHFFINNILIKGSKTLANNPFGVKLNEELGVFLSDIFLWIISFFYEsFIEPITreNNLGIFLKI 382
                 79***************************************************************************97766*****999999999987 PP

        Gpi1  97 lallsll.GltfalsllsDllslltlhiylfyvlsariyrlqlevlksLfqlfrGkkyNvLrnrvDsldyeldqlllGtllFtvlvfLlPTv 187
                 +  + ++ G++f +s+++D++s+l l iy+fy++s ++y++ l+++ sLf+lf+Gkk NvLr+r+D+  ++ldq+l+Gt+lF++l+fL+PTv
  CCD24554.1 383 TIQVTCCiGCSFGISMIVDFFSILFLPIYIFYHISRKLYHWDLSIMLSLFYLFCGKKNNVLRDRIDHNYFQLDQMLVGTVLFIILLFLTPTV 474
                 65555555***********************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4381.15
//
Query:       CCD24555.1  [L=2002]
Description: hypothetical protein NDAI_0D02410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.9e-100  334.1 114.0    1.9e-35  122.3  17.7    5.1  4  Ion_trans    Ion transport protein
       0.01   15.4   0.0      0.046   13.3   0.0    2.2  2  EF-hand_1    EF hand
  ------ inclusion threshold ------
       0.13   12.3   0.0       0.55   10.3   0.0    2.1  1  EF-hand_6    EF-hand domain
       0.17   11.7   0.0       0.38   10.6   0.0    1.6  1  GPHH         Voltage-dependent L-type calcium channel, IQ-ass


Domain annotation for each model (and alignments):
>> Ion_trans  Ion transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3  17.7   4.3e-39   1.9e-35       7     242 ..     314     685 ..     309     688 .. 0.93
   2 !   51.2  25.0   2.1e-17   9.6e-14       4     237 ..     735     965 ..     732     972 .. 0.87
   3 !  109.1  18.2   4.4e-35     2e-31       4     243 ..    1177    1447 ..    1173    1449 .. 0.87
   4 !   66.6  29.1   4.3e-22   1.9e-18       2     242 ..    1495    1741 ..    1494    1742 .. 0.86

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 4.3e-39
                 HHHHHHHHHHHHHHCCCSSSSHHHHC.....HHHHHHHHHHHHHHHHHHHHHHHHHTH......................................... CS
   Ion_trans   7 filllillncvflaletyfpedelek.....tileilelvftaiftlemllkilalgl......................................... 59 
                  ++ll+l  +++l ++ty+p+ + +      ++ +++ l+  a ft+  + kila+g+                                         
  CCD24555.1 314 AYFLLLLFFTILLSYRTYNPR-NVDFfyiltNWSDYVILTLFAYFTVNDITKILAFGFwddsqmfdaqgrnyrtivnrigfwksykhlrkkygsniidf 411
                 6789999**************.222257777999999999*********************************************************** PP

                 ....................................HHHHHHCHSHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHGGGGGGHHHCHSHHHHHH CS
   Ion_trans  60 ....................................likkrYlrdpwnilDflvvlpsllslvlse...esllllsvlrlfrvlrllklisrleglrtl 119
                                                      +++ + r+ wn++D+++ + ++l ++ls     + ++++v++ + vlr+l+l++   gl+ +
  CCD24555.1 412 fippkllnleekakskkhhlkssltkeefeqeeklfYSPRAFARSSWNRIDLVSSFSFWLGIFLSIrgyDKRVGIRVFKPLSVLRILRLVNTDTGLSSI 510
                 ************************************************************995544556679*************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC.............................................CC.......SCCST CS
   Ion_trans 120 vtalirsvkdllnvlllllvvlfifaligvqlfkgklrek.............................................ne.......caktw 166
                 ++ +++ +++l+nv ++l+ ++ +f+++gvq fkg++r++                                             +        ++ + 
  CCD24555.1 511 LRGVKHGIRQLINVGFMLVYFWAFFGILGVQTFKGSFRRQcvwinpenptdtyqysnqfcggylepvtkarmpyvfadgspgpisKGflcpqysQCISN 609
                 **************************************99***************99999999999998888888888777666500555556666889 PP

                 SSSTTTSSSSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 167 enpnngntnFdnfftallwlfrlmttegwgdilyatldekskvaliyfvifiilgsflllNlliaviadnfqelte 242
                 +np ng+++Fdn+++++  +f +m+ + ++d++y+t+d+ ++ a+++f+  i++ +++++Nlliav +++f+  +e
  CCD24555.1 610 SNPYNGRISFDNIVNSMEMVFIIMSANTFTDLMYYTMDSDEMAACLFFLFSIFVLTIWMMNLLIAVLVSSFELANE 685
                 9**********************************************************************98776 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 2.1e-17
                 HHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH....HHHHHHHHHHHHH CS
   Ion_trans   4 felfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl....vlseesllllsvl 98 
                 +e+ +++lil+ +++  + ++    ++    +  ++ ++ ++ +le  +++l+ ++ + +++l+++  + Df++ +++l++     +  +    + + l
  CCD24555.1 735 IEWTMVVLILTDLIMRSCIDATTTADSL-LYFAKVDRAISIVLFLESMFRLLCHFP-NIWKFLTNTSYVYDFVISIVTLITSclaaD--KRLGRVYYWL 829
                 6899999999999998885555553333.56677799999*************888.7899*******************8866432..367999**** PP

                 HHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHHHHHTTSSHHH CS
   Ion_trans  99 rlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlfrlmttegwgd 197
                 ++f++ r+ ++i +++ ++ l + +++   +++n+  +++ + f+ ++i+  +f+g +             +++   ++++++++l+lf++ +te+w+d
  CCD24555.1 830 SIFQISRFYRVILSFPFVKKLWKQVLKNGIMIWNLSSFYFSLTFLSSIIMALYFEGVIP--------LDAMQDNLLGMTSLPNSFLSLFVIGSTENWTD 920
                 ******************************************************55555........3333445555899******************* PP

                 HHHHHHHHS.....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans 198 ilyatldek.....skvaliyfvifiilgsflllNlliaviadnf 237
                 ilya ++++      +++ ++++i++il++ ++lN++ia+i+ ++
  CCD24555.1 921 ILYALQQYSpnissAFFCSVLLIIWFILSNSVVLNIFIALISQSL 965
                 *************999*************************9876 PP

  == domain 3  score: 109.1 bits;  conditional E-value: 4.4e-35
                  HHHHHHHHHHHHHHHHHCCCSSSSHHHHC.HHHHHHHHHHHHHHHHHHHHHHHHHTH.HHHHHHCHSHHHHHHHHHHHHHHHHHHHHH.HHHHHHHH CS
   Ion_trans    4 felfilllillncvflaletyfpedelek.tileilelvftaiftlemllkilalgl.likkrYlrdpwnilDflvvlpsllslvlse.esllllsv 97  
                  ++++ +ll++++c + ++   + +  ++  ++ + l+++f+ +f++e+ +k +a g   ++  Y+r+pwn++Dflv++  ++ lv+   ++  + ++
  CCD24555.1 1177 YAIVTVLLVVCSCYVTPIYRRDHH--MNVwSWDTSLDCAFIFVFLFEFMVKTVADGWlYSPNAYIRNPWNLIDFLVLVSLIINLVSYLhNEGNVSRI 1271
                  567788999999999999555555..55569999********************999999**********************9977667889999** PP

                  HHHHGGGGGGHHHCHSHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC...........CC........SCCSTSSSTTTSS CS
   Ion_trans   98 lrlfrvlrllklisrleglrtlvt.alirsvkdllnvlllllvvlfifaligvqlfkgklrek...........ne........caktwenpnngnt 174 
                  ++ +  lr+l++++ + + r + t  +++ +k+++   l+++ +lf f + g++lf g+l ++           ne        +    +  ++++ 
  CCD24555.1 1272 FKGLTALRALRCLTISTTARQTFTlVMFDGIKKIGEAGLISFSLLFPFTVWGLNLFRGRLGKCndssmglnscfNEyteevfqwDIMMPRVYQQPHL 1368
                  *************99999888777689************************************6666666444411555566663333444456677 PP

                  SSSSHHHHHHHHHHHHTTSSHHHHHHHHHHHS..........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  175 nFdnfftallwlfrlmttegwgdilyatldek..........skvaliyfvifiilgsflllNlliaviadnfqelter 243 
                   Fd+f++a+ +l ++++ egw d+l + +++           s  + +++v+f++l+++++lNl++ +i++n++++t +
  CCD24555.1 1369 YFDSFGSAFRSLYEIISLEGWVDLLEDIMNSTgvgsipsafsSASSAAFLVLFNFLSMVFILNLFVSFIITNHAKTTGQ 1447
                  8*************************************************************************99865 PP

  == domain 4  score: 66.6 bits;  conditional E-value: 4.3e-22
                  HHHHHHHHHHHHHHHHHHHCCCSSSSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHCHSHHHHHHHHHHHHHHHHH........HHHHH CS
   Ion_trans    2 svfelfilllillncvflaletyfpedelektileilelvftaiftlemllkilalgllikkrYlrdpwnilDflvvlpsllsl........vlsee 90  
                  +++++f  +++++++++l  + y ++ +++ ++ +i  ++ t if++  ll++ + gl     Y+++ wni+ +++++ s++          +    
  CCD24555.1 1495 FYYAMFLQIVLYVHILMLLTKRYTKSTTKT-SADTIYFMISTTIFLIQELLRLCGEGL---HLYIKQKWNIIRLIILMDSFVLTiigfsvpyI---- 1583
                  678888888888999999889898885555.44455567899****************...*****************999866455553321.... PP

                  HHHHHHHHHHHGGGGGGHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSCCSTSSSTTTSSSSSSHHHHHHHHH CS
   Ion_trans   91 sllllsvlrlfrvlrllklisrleglrtlvtalirsvkdllnvlllllvvlfifaligvqlfkgklreknecaktwenpnngntnFdnfftallwlf 187 
                   +   ++  +f ++ +l li + + l+ l+ + + s++ +l + + ++++++++a++ +q+f g  r           +  +n nF++++++l++lf
  CCD24555.1 1584 WVWFHNMKEVFHLIFFLFLIPQNDMLSELIETAMASLPPILSLTYTWAILFLVYAIALNQIF-GLTR--------LGPNTTDNLNFRTVIKSLIALF 1671
                  3444556667799999999999999999**********************************.4444........3444467789************ PP

                  HHHTTSSHHHHHHHHHHHS...............HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Ion_trans  188 rlmttegwgdilyatldek...............skvaliyfvifiilgsflllNlliaviadnfqelte 242 
                  r+ ++egw+ i+++ +  +                 +a+i+++++++l++++++N++i +i+ nf+++++
  CCD24555.1 1672 RCSFGEGWNYIMDDLTVLEpycyvndvgnsdcgsLTYAYILLMSWNVLSMYIFMNMFITLIIGNFSYVYR 1741
                  **************999999************99999*****************************9985 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.4   6.3e+03      14      26 ..     614     626 ..     614     628 .. 0.79
   2 !   13.3   0.0     1e-05     0.046       2      28 ..    1757    1783 ..    1756    1784 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.4
                 SSEEEHHHHHHHH CS
   EF-hand_1  14 dGkIdfeEfkell 26 
                 +G+I+f+  ++ +
  CCD24555.1 614 NGRISFDNIVNSM 626
                 8*****9877655 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1e-05
                  HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1    2 lkeiFrefDkDgdGkIdfeEfkellkk 28  
                  + e+++++D Dg+G +df+ + +l+ +
  CCD24555.1 1757 FVEAWAKYDSDGTGELDFSYLPRLMHS 1783
                  679****************99988875 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00012      0.55       1      26 [.    1756    1781 ..    1756    1785 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00012
   EF-hand_6    1 elreaFklfDkdgdGkidaeElrkal 26  
                  ++ ea+ ++D dg+G++d++ l +++
  CCD24555.1 1756 KFVEAWAKYDSDGTGELDFSYLPRLM 1781
                  5889**************99877666 PP

>> GPHH  Voltage-dependent L-type calcium channel, IQ-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   8.4e-05      0.38       1      35 [.    1756    1790 ..    1756    1807 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8.4e-05
        GPHH    1 eFvrvWaeyDPeAtgrikvqdmyellrrlspPLGf 35  
                  +Fv++Wa+yD   tg    + +  l+ +   PL f
  CCD24555.1 1756 KFVEAWAKYDSDGTGELDFSYLPRLMHSFDGPLSF 1790
                  5***********************99999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2002 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.10u 0.28s 00:00:01.38 Elapsed: 00:00:00.48
# Mc/sec: 12573.14
//
Query:       CCD24556.1  [L=1084]
Description: hypothetical protein NDAI_0D02420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.5e-134  446.7   2.5   4.5e-134  446.7   2.5    3.1  3  CRM1_C         CRM1 C terminal
    1.4e-36  125.8   6.4    1.4e-36  125.8   6.4    3.8  4  Xpo1           Exportin 1-like protein
    5.1e-32  109.3   2.2    1.3e-31  108.0   2.2    1.8  1  CRM1_repeat_2  CRM1 / Exportin repeat 2
    3.5e-28   97.5   0.4    2.4e-27   94.8   0.4    2.7  1  CRM1_repeat_3  CRM1 / Exportin repeat 3
    5.2e-16   57.9   0.9    5.2e-16   57.9   0.9    2.1  2  CRM1_repeat    Chromosome region maintenance or exportin repe
    1.2e-15   57.2   0.9      7e-15   54.7   0.2    2.8  2  IBN_N          Importin-beta N-terminal domain
    0.00036   20.5   0.7       0.38   10.7   0.2    2.8  2  DUF507         Protein of unknown function (DUF507)
     0.0072   16.4   2.6       0.11   12.7   0.2    3.4  3  V-ATPase_H_C   V-ATPase subunit H
  ------ inclusion threshold ------
       0.12   12.3   6.2       0.19   11.6   0.1    3.8  4  DUF3385        Domain of unknown function (DUF3385)
        0.2   11.6   1.7        8.9    6.2   0.1    3.8  3  DrrA_P4M       DrrA phosphatidylinositol 4-phosphate binding 


Domain annotation for each model (and alignments):
>> CRM1_C  CRM1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.99   1.8e+03     270     307 ..      69     110 ..      16     115 .. 0.65
   2 ?    0.6   1.1      0.14   2.6e+02     132     168 ..     561     604 ..     552     655 .. 0.60
   3 !  446.7   2.5  2.5e-137  4.5e-134       1     320 [.     720    1043 ..     720    1044 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.99
      CRM1_C 270 eyvvellsnaFpnlsqkq...veafvvglf.elandlkkfke 307
                 + + +l+s++++ l ++q   +++fvvg++ ++++d++ f++
  CCD24556.1  69 SILNKLISTKWKLLPAEQrigIRNFVVGMIiTMCQDDMVFQT 110
                 445566666666665555555899999986267789998886 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.14
      CRM1_C 132 eyPehrveFfellrainkkcfkallk.......lpseqfklvid 168
                 +yP + + ++++l+ ++ k f+ +++       +  ++f  +++
  CCD24556.1 561 QYPRFLKAHWNFLKTVVLKLFEFMHEthegvqdMACDTFIKIVQ 604
                 79999999999999999999998887333322233334444444 PP

  == domain 3  score: 446.7 bits;  conditional E-value: 2.5e-137
      CRM1_C    1 QlgkiyldllklyklvseliseavaaegeiatktpkvrllrtvkkeiLkLietyiekaedleevlnnlveplleavLvdYkknvpeardaevLsllt 97  
                  Qlg+iy+++l+ly++vs++ise+va +g iatktpkvr+lrt+kkeiLkLietyi++a++leev+++lv pll+avL+dY +nvp+ardaevL+++t
  CCD24556.1  720 QLGHIYFNMLQLYRAVSSMISEQVALDGLIATKTPKVRGLRTIKKEILKLIETYISQAKNLEEVVKDLVDPLLNAVLEDYLNNVPDARDAEVLNCMT 816 
                  9************************************************************************************************ PP

      CRM1_C   98 tlveklenlisdevpkileavfectldmikkdfeeyPehrveFfellrainkkcfkallklpseqfklvidsivwafkHterdvaetgLnillellk 194 
                  t+v+k++++i + v  il++vfectl+mi+kdf+eyPehrveF+ellr in+k+f a+l+lp+++fkl+id+i+wafkH++rdv+ +gL+i+l+l+k
  CCD24556.1  817 TVVSKVGHMIPQGVILILQSVFECTLNMINKDFTEYPEHRVEFYELLRVINEKSFGAFLELPPTAFKLFIDAICWAFKHNNRDVEVNGLQIALDLVK 913 
                  ************************************************************************************************* PP

      CRM1_C  195 nvee.kkkeaanqFyknyylsllkevlkvltDtdhksgfklqaelLaklirlvesgsikvpllee...eqvtsnkvflseyvvellsnaFpnlsqkq 287 
                  nve+  ++ +an+Fykn+y+++++e+++vltD+dhksgf++q++lL+kli+lv +++i+vp+++e   +q+tsn+v+l++y++++l naFpnl+ +q
  CCD24556.1  914 NVERmGNTPFANSFYKNFYFTFVSETFYVLTDSDHKSGFSKQCLLLMKLISLVYENKIQVPIYDEssaPQGTSNQVYLNQYLANMLGNAFPNLTGEQ 1010
                  ***978999*******************************************************99999**************************** PP

      CRM1_C  288 veafvvglfelandlkkfkehlrDflislkefs 320 
                  +++f+ +l+++++dl+kf+ +lrDfl+++ke +
  CCD24556.1 1011 ITNFLGALTKQYGDLSKFNGILRDFLVQIKEIG 1043
                  *******************************86 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   6.4   7.7e-40   1.4e-36       2     149 .]     112     256 ..     111     256 .. 0.98
   2 ?   -1.5   0.1       1.3   2.4e+03      15      40 ..     358     383 ..     356     392 .. 0.72
   3 ?   -2.0   0.0       1.8   3.3e+03      24      35 ..     622     633 ..     569     670 .. 0.56
   4 ?    0.2   0.0      0.38   6.9e+02      50      84 ..     760     796 ..     730     859 .. 0.58

  Alignments for each domain:
  == domain 1  score: 125.8 bits;  conditional E-value: 7.7e-40
                 HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.HHHHHHHHHHHHHHHHHHHTSHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH CS
        Xpo1   2 kflrnklaealaelflqeypnnWpsffddllsllssspsglelllriLkvlpeEiadfsrskleqerrndlkdllrsnvqkilelllqileqsqskkqs 100
                 k+l +k +++l+++++qe+p+nWp+f+++l+s+++ss++++++++ iLk+l+eE++dfs ++++q ++ +lk+ +++++++i++l++q+leq +     
  CCD24556.1 112 KNLISKSDLTLVQILKQEWPQNWPEFIPELISSSTSSLNVCQNNMVILKLLSEEVFDFSAEQMTQAKALHLKTSMAKEFEQIFKLCFQVLEQGSA---- 206
                 78999***************************************************************************************987.... PP

                 HHHHHHHHHHHHHHTTTS-HHHHHTSCHHHHH.HHHCCSCCCHHHHHHHH CS
        Xpo1 101 selveavLkclsswvswidiglivnnpllnll.fqlLsdpelreaavecL 149
                 ++lv a+L+ l +++ wi+  +i++++ll+ll  ++L+++++r  +++cL
  CCD24556.1 207 PSLVVAALESLLRYLHWIPNRYIFETNLLELLsTKFLGSSDIRAITLKCL 256
                 9*******************************99***************8 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
                 HHHHHTTTTSTTHHHHHHHHHCT..HH CS
        Xpo1  15 lflqeypnnWpsffddllsllss.sps 40 
                 lf++   + W+++++dl+  +++  ++
  CCD24556.1 358 LFKMT-LDYWNNLVSDLFYEVQKlPLN 383
                 66665.799********9988883344 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.8
                 STTHHHHHHHHH CS
        Xpo1  24 Wpsffddllsll 35 
                 +++++ d+ s +
  CCD24556.1 622 IQTIIRDIQSTT 633
                 223333333333 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.38
                 HHHHHHHHTSHTTTSCHHH..HHHHHHHHHHHHHHHH CS
        Xpo1  50 kvlpeEiadfsrskleqer..rndlkdllrsnvqkil 84 
                 +++++Ei +  ++  +q +  ++ +kdl +  ++++l
  CCD24556.1 760 RTIKKEILKLIETYISQAKnlEEVVKDLVDPLLNAVL 796
                 4555555554444444433212222222222222222 PP

>> CRM1_repeat_2  CRM1 / Exportin repeat 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   2.2   7.5e-35   1.3e-31       2      68 .]     417     483 ..     416     483 .. 0.98

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 7.5e-35
  CRM1_repeat_2   2 kqlYkeiLsqlrlvlierMakPeEVliveneeGeivretvkdtdtialYktmretLvyLthLdvedt 68 
                    k++Y++i+sqlr v+ie+M++PeEVl+ven+eGeivre+vk++dti+lYk+ re+LvyLthL+vedt
     CCD24556.1 417 KHIYENICSQLRWVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVEDT 483
                    89***************************************************************98 PP

>> CRM1_repeat_3  CRM1 / Exportin repeat 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.4   1.4e-30   2.4e-27       1      51 []     496     546 ..     496     546 .. 0.99

  Alignments for each domain:
  == domain 1  score: 94.8 bits;  conditional E-value: 1.4e-30
  CRM1_repeat_3   1 dgseWswnnlnkLCWAiGSISgamseedEkrfLvtvikdLLnLceekrgkd 51 
                    dgseWsw+n+n+L+WAiGSISg+m+ee+Ekrf+vtvikdLL L+e+krgkd
     CCD24556.1 496 DGSEWSWHNINTLSWAIGSISGTMNEETEKRFVVTVIKDLLALTEKKRGKD 546
                    79***********************************************98 PP

>> CRM1_repeat  Chromosome region maintenance or exportin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.5       3.7   6.6e+03      20      25 ..     192     197 ..     191     198 .. 0.83
   2 !   57.9   0.9   2.9e-19   5.2e-16       1      37 []     338     374 ..     338     374 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 3.7
                  HHHHHH CS
  CRM1_repeat  20 EiFKIC 25 
                   iFK C
   CCD24556.1 192 QIFKLC 197
                  59**** PP

  == domain 2  score: 57.9 bits;  conditional E-value: 2.9e-19
                  HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH CS
  CRM1_repeat   1 eallaalqYLvkISeVedrEiFKICLEYWnkLvseLY 37 
                  e+ll+a+qYL+++S++++rE+FK  L+YWn Lvs+L+
   CCD24556.1 338 ELLLSAHQYLIELSKIDERELFKMTLDYWNNLVSDLF 374
                  689*********************************8 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.2   3.9e-18     7e-15       1      73 [.      34      99 ..      34     100 .. 0.98
   2 ?   -1.5   0.0       1.4   2.4e+03       8      35 ..     187     213 ..     183     222 .. 0.78

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 3.9e-18
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnllg 73
                A++ L +++++p+++++  qil+ s+++ +++++++++L +li+ +W+       lp+e++  Irn+++ +++
  CCD24556.1 34 AQEVLTKFQEHPDAWQRADQILQFSNNP-QAKFIGLSILNKLISTKWK------LLPAEQRIGIRNFVVGMII 99
                8999************************.*******************......***************9997 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.4
                 HHCSTCHHHHHHHHHHCTTSHHHHHHHH CS
       IBN_N   8 lekqpgflsallqilanseselevRqlA 35 
                 ++++++ + +++q+l++++ + ++ ++A
  CCD24556.1 187 AKEFEQIFKLCFQVLEQGSAP-SLVVAA 213
                 56789999*********9988.555555 PP

>> DUF507  Protein of unknown function (DUF507)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0     0.003       5.3      18      81 ..     296     362 ..     282     365 .. 0.80
   2 !   10.7   0.2   0.00021      0.38       3      61 ..     731     789 ..     729     800 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.003
      DUF507  18 dLlnsglielekeleeikkeieeileeelkkEkel...dekvkeil.eeneeeiefervderelFlri 81 
                 dL +s + +++ + +++ ++ + +l+ +l + ++l   de  +e+l ++++  ie  ++derelF+++
  CCD24556.1 296 DL-KSTYATANGTDQSFLQDFAMFLTTYLTHHRDLlesDESLRELLlSAHQYLIELSKIDERELFKMT 362
                 55.67777777788889999999999999999987565788888752667777************996 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00021
      DUF507   3 lklkhveyiaekiakd.LlnsglielekeleeikkeieeileeelkkEkeldekvkeile 61 
                 l++++  +i+e++a d L+  ++ +++  l +ikkei +++e ++ + k+l+e vk++++
  CCD24556.1 731 LYRAVSSMISEQVALDgLIATKTPKVRG-LRTIKKEILKLIETYISQAKNLEEVVKDLVD 789
                 5666667788888766577778888887.99**************************987 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       6.5   1.2e+04      41      75 ..     191     225 ..     181     239 .. 0.69
   2 ?    1.6   0.1      0.16   2.9e+02      51      98 ..     431     479 ..     412     487 .. 0.80
   3 !   12.7   0.2   5.9e-05      0.11      41     114 ..     529     604 ..     518     606 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 6.5
  V-ATPase_H_C  41 fkllkkLiklleeskdktvlavalnDigelvkllp 75 
                    +++k  +++le+ + ++ ++ al  + ++++ +p
    CCD24556.1 191 EQIFKLCFQVLEQGSAPSLVVAALESLLRYLHWIP 225
                   45667777888766667777777777777666665 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.16
  V-ATPase_H_C  51 l.eeskdktvlavalnDigelvkllpegkkvleklkaKekimellehed 98 
                   + e+  +++ + v+ nD ge+v++  + +++++ +k   +++ +l+h +
    CCD24556.1 431 IiENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN 479
                   3344455788999***********************9999999999876 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 5.9e-05
  V-ATPase_H_C  41 fkllkkLiklleeskdktvlavalnDigelvkllpeg.kkvleklka.KekimellehedeevkyeALkavqkllv 114
                   + ++k L++l e+++ k + av+++Di  +v ++p+  k++++ lk+   k++e+++++ e v+  A  +  k+++
    CCD24556.1 529 VTVIKDLLALTEKKRGKDNKAVVASDIMYVVGQYPRFlKAHWNFLKTvVLKLFEFMHETHEGVQDMACDTFIKIVQ 604
                   56899999999887889******************751666777766577899999999*****999999988876 PP

>> DUF3385  Domain of unknown function (DUF3385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       4.9   8.8e+03      97     138 ..     104     150 ..      92     163 .. 0.45
   2 ?   11.6   0.1   0.00011      0.19      73     158 ..     517     604 ..     467     607 .. 0.82
   3 ?   -1.7   0.0       1.4   2.5e+03     121     149 ..     617     645 ..     608     656 .. 0.79
   4 ?    1.2   0.1      0.17     3e+02      96     144 ..     691     738 ..     679     750 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 4.9
     DUF3385  97 dpslsshhaavveai....mnifktlglkc.vpfLdqiipallsvir 138
                 d  + + +++ ++      ++i+k+   +   +f++++i++  s ++
  CCD24556.1 104 DDMVFQTQKNLISKSdltlVQILKQEWPQNwPEFIPELISSSTSSLN 150
                 55554555554443221114444432222223344444444444444 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00011
     DUF3385  73 vglspsneeyyptvvinaLlrilkdpslsshhaavveaimnifkt..lglkc.vpfLdqiipallsvirtteesnlrefllqqLatLvs 158
                  ++ + +e  +  +vi+ Ll++ +++  ++++a v + im+++ +    lk   +fL+ ++ +l++ +++t+e  ++++  + + ++v+
  CCD24556.1 517 GTMNEETEKRFVVTVIKDLLALTEKKRGKDNKAVVASDIMYVVGQypRFLKAhWNFLKTVVLKLFEFMHETHE-GVQDMACDTFIKIVQ 604
                 4455666999999******************************984433555588***************998.999888877777765 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.4
     DUF3385 121 kcvpfLdqiipallsvirtteesnlrefl 149
                 +  pf++ ii ++ s++++ +++++  f+
  CCD24556.1 617 ETEPFIQTIIRDIQSTTSDLQPQQVHTFY 645
                 45689999999999999999997777766 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.17
     DUF3385  96 kdpslsshhaavveaimnifktlglkcvpfLdqiipallsvirtteesn 144
                  d+   +  a+++++ + +++++g    + L +i  ++l++ r  ++  
  CCD24556.1 691 LDSETVKIIANIIKTNVAVCSSMGADFYSQLGHIYFNMLQLYRAVSS-M 738
                 45555667778888889999999999999999999999999998776.3 PP

>> DrrA_P4M  DrrA phosphatidylinositol 4-phosphate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1    0.0049       8.9      69      93 ..     171     195 ..     145     204 .. 0.83
   2 ?   -0.2   0.0      0.49   8.8e+02      30      51 ..     762     783 ..     750     815 .. 0.74
   3 ?    0.7   0.0      0.25   4.6e+02      12      45 ..    1008    1042 ..    1000    1063 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0049
                 S-SSHHHHHHT---HHHHHHHHHHH CS
    DrrA_P4M  69 tgQglftrlfglkTssvkalekivk 93 
                  +Q +  + ++lkTs  k++e+i+k
  CCD24556.1 171 AEQMTQAKALHLKTSMAKEFEQIFK 195
                 566667778**************98 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.49
                 HHHHHHHHHHHHHTT--SHHHH CS
    DrrA_P4M  30 LKtkILkdfKdkleeistkeeL 51 
                  K++ILk   + ++++++ ee+
  CCD24556.1 762 IKKEILKLIETYISQAKNLEEV 783
                 4666777666666666666654 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.25
                  STT-TTS-GGGTT--HHHHH.HHHHHHHHHHHTT- CS
    DrrA_P4M   12 akkskklkekyqklkGDaLK.tkILkdfKdkleei 45  
                   ++ +++   + k  GD  K + IL+df  +++ei
  CCD24556.1 1008 GEQITNFLGALTKQYGDLSKfNGILRDFLVQIKEI 1042
                  567888888999999*****667*****9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1084 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 7147.31
//
Query:       CCD24557.1  [L=271]
Description: hypothetical protein NDAI_0D02430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-17   62.1   0.8    1.3e-13   50.7   0.6    2.1  2  Ribosomal_L3  Ribosomal protein L3


Domain annotation for each model (and alignments):
>> Ribosomal_L3  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.6   7.3e-18   1.3e-13     205     291 ..     152     241 ..     111     244 .. 0.89
   2 !   11.0   0.0   8.6e-06      0.15     322     347 ..     242     267 ..     240     271 .] 0.89

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 7.3e-18
                   EEECCCCS-TTSEEEEEEEE---EEE-HHHHCT----STTTSSS..SSS-S-SS-.SSSSS--TTS--SEEESCCEEEEEEEEEEEEETT CS
  Ribosomal_L3 205 tvavaavFrqgeliDvigvtkGkGfeGvvkRWgvkklprkthrg..lRkvaaiga.wdparVsstvaraGqkGyhhRtelnkkiyrigkg 291
                   t+   + F+ g+++D  +v kGkGf Gv+k++++k+l++ ++ +  +R+ ++ g   dp+r+ ++ +++G++G  + t  n +i ++++ 
    CCD24557.1 152 THLKPSFFKVGQFVDLKSVSKGKGFAGVMKKYHFKGLRASHGTSvmHRHGGSYGQnQDPGRILPGKKMPGRMGGKQVTVQNAQILKVDDA 241
                   5566688***********************************9999*******97369****************************9984 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 8.6e-06
                   SCEEEEES--SSSTTEEEEEEE-SSG CS
  Ribosomal_L3 322 ndfilvkGsvpGpkkrlvklrksllt 347
                   n++i vkGs+pGpk+  vk+++++  
    CCD24557.1 242 NNVIWVKGSIPGPKDTFVKIQEAIKK 267
                   799******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2040.76
//
Query:       CCD24558.1  [L=679]
Description: hypothetical protein NDAI_0D02440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.6    8.7   5.1        5.8    6.9   0.1    3.2  3  PuR_N     Bacterial purine repressor, N-terminal


Domain annotation for each model (and alignments):
>> PuR_N  Bacterial purine repressor, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.2      0.01   1.8e+02      35      60 ..     154     178 ..     148     181 .. 0.84
   2 ?    6.9   0.1   0.00033       5.8      29      46 ..     267     284 ..     259     302 .. 0.80
   3 ?   -1.1   0.1       0.1   1.8e+03      23      38 ..     452     467 ..     448     471 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.01
       PuR_N  35 SsiSeDlaiikealekeglGkletva 60 
                 S+i +D +++++ +++ ++ k+et++
  CCD24558.1 154 STITDDFDFVEKNISN-KISKVETIT 178
                 9***********9975.688888875 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00033
       PuR_N  29 rfeaAKSsiSeDlaiike 46 
                  ++aAK si eD++++++
  CCD24558.1 267 IYSAAKNSIMEDIEFVNA 284
                 699***********9975 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.1
       PuR_N  23 ltyfaerfeaAKSsiS 38 
                 l++f ++f ++ SsiS
  CCD24558.1 452 LEDFRKSFLSTSSSIS 467
                 899************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1233  (0.0687713); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4623.17
//
Query:       CCD24559.1  [L=292]
Description: hypothetical protein NDAI_0D02450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2254.01
//
Query:       CCD24560.1  [L=64]
Description: hypothetical protein NDAI_0D02460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-16   57.6   0.1      1e-15   57.4   0.1    1.0  1  Thiamine_BP     Thiamine-binding protein
  ------ inclusion threshold ------
      0.031   13.8   0.0      0.033   13.7   0.0    1.0  1  Fijivirus_P9-2  Fijivirus P9-2 protein


Domain annotation for each model (and alignments):
>> Thiamine_BP  Thiamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.1   1.1e-19     1e-15       1      53 [.       9      61 ..       9      63 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 1.1e-19
                 EEEEEEECSSSSSGHHHHHHHHHHHHHTTSSEEEEETTEEEEEEEHHHHHHHH CS
  Thiamine_BP  1 veisviPlgtegesvskyVakvvevlkesglkyeltpmgTtiegeldevmevv 53
                 ++++++P+gt+++svs++Va v   ++es+lk +l++ gTtieg++d++m+++
   CCD24560.1  9 ADVCMVPIGTSTASVSDFVASVEIKIRESELKSTLHSAGTTIEGPWDDIMNLI 61
                 69************************************************998 PP

>> Fijivirus_P9-2  Fijivirus P9-2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.6e-06     0.033      14      59 ..       6      51 ..       3      61 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.6e-06
  Fijivirus_P9-2 14 felakvemkaisntmhkvddfvstidvnfsdselddkvddleikie 59
                    f la v m  i  +   v dfv+++++++ +sel   +      ie
      CCD24560.1  6 FCLADVCMVPIGTSTASVSDFVASVEIKIRESELKSTLHSAGTTIE 51
                    789*******************************988776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 506.15
//
Query:       CCD24561.1  [L=476]
Description: hypothetical protein NDAI_0D02470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    0.00037   20.7   0.0       0.35   11.2   0.0    2.8  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0034   18.2   0.1        6.7    7.8   0.0    3.7  3  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.014   14.4   1.6      0.023   13.6   0.1    2.1  2  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.9   1.7e+04      43      60 ..      22      39 ..      15      59 .. 0.74
   2 !   11.2   0.0   5.9e-05      0.35      35      78 ..     223     267 ..     189     273 .. 0.88
   3 !    6.9   0.0    0.0013       7.5      39      71 ..     272     304 ..     266     324 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.9
  ANAPC4_WD40 43 sLaWkpdgklLavaysdg 60
                 ++++++d++ +  a +dg
   CCD24561.1 22 HVNFNQDDSCFSCALEDG 39
                 567888888888888887 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 5.9e-05
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdg.evrlldaesgkvvhslsv 78 
                  ++++s +r ++ +++g+++a   ++g  +r+++ ++g ++++++ 
   CCD24561.1 223 KAHKSDIRLIKLNHQGTMIASCSEKGtIIRIFSTHNGSLIKEFRR 267
                  568999*******************9568***********99875 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0013
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                   e+ +++++p+g+ La+  ++ +++++++++ +
   CCD24561.1 272 VEIYDMEFSPKGNKLAIISDKQTLHIFQVYDHN 304
                  68999************************9865 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.43   2.6e+03       7      32 ..      10      39 ..       4      43 .. 0.70
   2 !    7.8   0.0    0.0011       6.7       6      34 ..     221     250 ..     217     255 .. 0.85
   3 !    6.9   0.0    0.0021        12       3      37 ..     250     298 ..     248     299 .. 0.75

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.43
                EESS.SS...EEEEEEETTSSEEEEEETTS CS
        WD40  7 ltGH.ss...vtslafspdgawlasGsdDg 32
                 +GH s+     ++ f++d + ++++ +Dg
  CCD24561.1 10 TKGHtSNkpqFLHVNFNQDDSCFSCALEDG 39
                579963366756999999999986554565 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0011
                 EEESS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtv 34 
                 ++++H s+++ ++ ++ g+++as+s++gt+
  CCD24561.1 221 IIKAHkSDIRLIKLNHQGTMIASCSEKGTI 250
                 6789*888988889999********99987 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0021
                 EEEEEESSSS..............EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGHss..............vtslafspdgawlasGsdDgtvriW 37 
                  +r++++H++              ++++ fsp g+ la  sd++t++i+
  CCD24561.1 250 IIRIFSTHNGslikefrrgidsveIYDMEFSPKGNKLAIISDKQTLHIF 298
                 67899999445877777777776667777*******9844669999986 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   3.9e-06     0.023     139     225 ..     213     309 ..     160     318 .. 0.63
   2 ?   -2.1   0.2      0.24   1.4e+03     133     166 ..     413     443 ..     406     466 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.9e-06
    Ge1_WD40 139 dddeaskllvltrgdkaeiwsvdmiaskygsgelsveeieegllkieehsl...............iveaafspdGtalatasedGevkffqvyledee 222
                 +d++   l++ ++++     ++  i+ +++ + + + + + ++++i ++ +               i +  fsp G  la+ s   +++ fqvy ++++
  CCD24561.1 213 VDEDFPTLIIKAHKS-----DIRLIKLNHQGTMIASCSEKGTIIRIFSTHNgslikefrrgidsveIYDMEFSPKGNKLAIISDKQTLHIFQVYDHNNQ 306
                 333333444444444.....3445555555555555555555555554443345566666666666******************************997 PP

    Ge1_WD40 223 epr 225
                  ++
  CCD24561.1 307 FNK 309
                 554 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.24
    Ge1_WD40 133 edaeesdddeaskllvltrgdkaeiwsvdmiask 166
                 +d++ ++d+e s +lv+   +   iw+  +i +k
  CCD24561.1 413 DDNDNDNDEEDSLVLVW---KDCGIWEKYVILEK 443
                 23333333333444444...44566665555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3266.00
//
Query:       CCD24562.1  [L=161]
Description: hypothetical protein NDAI_0D02480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-49  165.4   0.7    3.2e-49  165.0   0.7    1.1  1  GSHPx     Glutathione peroxidase
    3.1e-05   23.9   0.1    0.00018   21.4   0.1    2.0  1  AhpC-TSA  AhpC/TSA family
  ------ inclusion threshold ------
      0.012   15.3   0.1      0.065   13.0   0.1    2.0  1  Redoxin   Redoxin


Domain annotation for each model (and alignments):
>> GSHPx  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.0   0.7   5.4e-53   3.2e-49       1     108 []       4     111 ..       4     111 .. 0.99

  Alignments for each domain:
  == domain 1  score: 165.0 bits;  conditional E-value: 5.4e-53
                 GGGBEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEE-TTTT---S-GGGHHHTSSHTTT-SSEEB--BBSSSTT CS
       GSHPx   1 iyelsakdidgekvkleklrgkvvlivnvaskCglteqykeleelqkrykdkglvilgfPCnqfgkqepgsdeeikkfrqgkyevtfellekievnGek 99 
                 +y+l++kd++ge+ ++ +l+gkvvlivnvaskCg+t+qykele+l+k+y+dkglvilgfPCnqfg+qepg+de+i +f+q +y+vtf++l+ki+vnG++
  CCD24562.1   4 FYKLTPKDKKGEDYPFTQLEGKVVLIVNVASKCGFTPQYKELESLYKKYQDKGLVILGFPCNQFGHQEPGTDEQIGQFCQLNYGVTFPILKKINVNGND 102
                 79************************************************************************************************* PP

                 B-HHHHHHH CS
       GSHPx 100 edplykflk 108
                  dp+y+flk
  CCD24562.1 103 MDPVYEFLK 111
                 *******98 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1     3e-08   0.00018       9      87 ..       8      93 ..       2     155 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 3e-08
                EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H...........SSEEE CS
    AhpC-TSA  9 elknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes..........lnfpll 87
                + k+++ge++ +++++gk+v+++ +++  c ++  + ++l+ ly++++++g+ ++g  +++   h++   +e+          ++fp+l
  CCD24562.1  8 TPKDKKGEDYPFTQLEGKVVLIVNVAS-KCGFT-PQYKELESLYKKYQDKGLVILGFPCNQFG-HQEPGTDEQigqfcqlnygVTFPIL 93
                556999***********9999999999.99876.789*******************9887655.5555555554555555556666665 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.1e-05     0.065      15      83 ..      11     121 ..       3     157 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
                 TTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEE....................................EESSSHHHH CS
     Redoxin  15 atdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvav....................................vadndafvk 77 
                 +++g+++   +++gk+v+++ v++  c+  +++  +le l++++ +kg  +++                                     + ++ ++v+
  CCD24562.1  11 DKKGEDYPFTQLEGKVVLIVNVAS-KCGF-TPQYKELESLYKKYQDKGLVILGFpcnqfghqepgtdeqigqfcqlnygvtfpilkkinvNGNDMDPVY 107
                 588999999***************.9*98.67777*************999888666666665555555555555555555555555533333333355 PP

                 HHHHH........T CS
     Redoxin  78 efwgk........e 83 
                 ef+++        +
  CCD24562.1 108 EFLKSkksgllgfK 121
                 55555555555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.69
# Mc/sec: 708.26
//
Query:       CCD24563.1  [L=648]
Description: hypothetical protein NDAI_0D02490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-07   30.5   6.8        1.1   10.2   0.0    6.5  6  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.015   14.8   1.0         19    4.7   0.1    3.5  3  HPS3_N       Hermansky-Pudlak syndrome 3
      0.016   14.0   1.1       0.15   10.8   0.1    2.5  3  Lgl_C        Lethal giant larvae(Lgl) like, C-terminal
      0.017   14.1   0.0       0.04   12.9   0.0    1.7  1  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
      0.023   15.0   0.7         30    5.0   0.3    4.1  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
       0.11   11.8   0.1       0.45    9.7   0.1    2.0  2  RAB3GAP2_N   Rab3 GTPase-activating protein regulatory subuni


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.052   1.6e+02      12      38 .]     296     331 ..     286     331 .. 0.68
   2 ?    3.7   0.3     0.042   1.2e+02      12      34 ..     372     394 ..     360     398 .. 0.73
   3 !    8.2   0.0    0.0016       4.9      15      38 .]     446     469 ..     436     469 .. 0.90
   4 !   10.2   0.0   0.00037       1.1      12      37 ..     487     515 ..     477     516 .. 0.66
   5 ?    0.9   0.0      0.33   9.9e+02       9      27 ..     530     546 ..     521     554 .. 0.74
   6 ?   -0.1   0.0       0.7   2.1e+03      16      37 ..     585     605 ..     574     606 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.052
                 S.EEEEEEETTSSE........EEEEETTSEEEEEE CS
        WD40  12 s.vtslafspdgaw........lasGsdDgtvriWd 38 
                 + vt+++f++ ++         ++ G+++g++ ++d
  CCD24563.1 296 DlVTCVSFDSTNSSsniydstyFLVGTKNGSLLLFD 331
                 469999944444444445666655699999999887 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.042
                 S.EEEEEEETTSSEEEEEETTSEE CS
        WD40  12 s.vtslafspdgawlasGsdDgtv 34 
                 s  +++++ +++++l+ G+d g++
  CCD24563.1 372 ScFCCIQWISNSKFLV-GDDSGSI 394
                 4248999*******98.9988887 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0016
                 EEEEETTSSEEEEEETTSEEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriWd 38 
                 +++ ++++++la G+ D+++ +W+
  CCD24563.1 446 GISINSNNSLLAVGGNDNSCTLWN 469
                 5678999999*************8 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00037
                 SEEEEEEETTSSE.EEEE..ETTSEEEEE CS
        WD40  12 svtslafspdgaw.lasG..sdDgtvriW 37 
                  v ++ f+p ++  la+G  s+D+++++W
  CCD24563.1 487 AVKAVTFCPWSSSlLATGggSKDRKIKFW 515
                 4555554444444367875579******* PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.33
                 SSSSEEEEEEETTSSEEEE CS
        WD40   9 GHssvtslafspdgawlas 27 
                 G+  vtsl +s++++ +++
  CCD24563.1 530 GQ--VTSLIWSKSKKQIVA 546
                 44..*******99999875 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.7
                 EEEETTSSEEEEEETTSEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriW 37 
                 +  sp+++ ++ +  D t+r++
  CCD24563.1 585 V-LSPSSTSICIAANDETIRFY 605
                 4.6777777765666*****98 PP

>> HPS3_N  Hermansky-Pudlak syndrome 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.025        74     132     175 ..     250     293 ..     214     310 .. 0.80
   2 ?    4.7   0.1    0.0064        19      26      68 ..     381     424 ..     363     425 .. 0.79
   3 ?    3.3   0.0     0.017        50      48      91 ..     519     562 ..     489     567 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.025
      HPS3_N 132 esptciacCqvtgnllvgvkkklslfrlkvktqdiselkllDfe 175
                   +++i+  + t n+lv+ ++++ l++  +   +i ++k+l+  
  CCD24563.1 250 FYSNLISWSNRTNNVLVALGCSVYLWSESFGALQILNQKFLNDR 293
                 556889999*****************999988888888887655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0064
      HPS3_N  26 agdkLlvatesgcvevydleeeeckvlcrfstvdk.vlkiayse 68 
                 ++ k+lv+  sg++  +++++ + + l++f+++++ v  + y++
  CCD24563.1 381 SNSKFLVGDDSGSITFFKINNTNIEFLNKFKAQNQqVCGMLYCS 424
                 3346***************************9986255588885 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.017
      HPS3_N  48 eckvlcrfstvdkvlkiaysesGdyvatlEeknkredatfvRvY 91 
                    +l++f+t ++v+++  s+s + +++    n+ e+ t ++vY
  CCD24563.1 519 TGILLNEFKTCGQVTSLIWSKSKKQIVATFGFNDTENPTLLKVY 562
                 556789**********9999888777665555555778888888 PP

>> Lgl_C  Lethal giant larvae(Lgl) like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   4.9e-05      0.15     126     214 ..     286     378 ..     275     385 .. 0.75
   2 ?   -1.0   0.0      0.18   5.4e+02     158     188 ..     385     414 ..     380     421 .. 0.80
   3 ?    0.1   0.0     0.084   2.5e+02     239     305 ..     511     580 ..     499     605 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.9e-05
                 GG..T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE....--SS----.EEEEEETTT--B-B-BHH CS
       Lgl_C 126 sekllskeksskvttieFsvmelggdgyssilllvGtnkGelltfkilPessGrfevefadkt....aaddskil.kiasieketgesalAtis 214
                 ++k+l+ +++  vt++ F   +   + y s + lvGt++G ll+f    + +   + +f +k+    +++d+++l +i  +  +t++s++  i+
  CCD24563.1 286 NQKFLNDRNKDLVTCVSFDSTNSSSNIYDSTYFLVGTKNGSLLLFDQFISLNFLLDNNFNKKKsnddNTEDKRLLkPISQF-DSTASSCFCCIQ 378
                 457889999999*********************************755466655556665555555555555554056666.678888877665 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.18
                 EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE CS
       Lgl_C 158 llvGtnkGelltfkilPessGrfevefadkt 188
                  lvG + G +  fki  +++ +f  +f+ + 
  CCD24563.1 385 FLVGDDSGSITFFKIN-NTNIEFLNKFKAQN 414
                 6899999999999999.88888888887665 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.084
                 EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE...EEEEETTT--EEEEEE-SS--- CS
       Lgl_C 239 vikpakskethksfedellcsaisvvkteekkkgivlvaltkdge...vkvlslPsLkeikkvklpeald 305
                  ik +++k +    e + + ++ s +  + kk+ ++    +++ +   +kv+s P++ ei +vk p++l 
  CCD24563.1 511 KIKFWHTKTGILLNEFKTCGQVTSLIWSKSKKQIVATFGFNDTENptlLKVYSYPKMIEILQVKSPAPLR 580
                 56667777777777777888888887655444444444444443344489************99987654 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.3e-05      0.04     181     222 ..     570     613 ..     500     621 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.3e-05
    Ge1_WD40 181 llkieehs..liveaafspdGtalatasedGevkffqvyledee 222
                 +l++++ +   + +a++sp  t++ +a++d +++f++++ e+++
  CCD24563.1 570 ILQVKSPAplRVLTAVLSPSSTSICIAANDETIRFYKLWSEKDD 613
                 4445554434599************************9988765 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.047   1.4e+02      42      87 ..     375     420 ..     360     424 .. 0.73
   2 ?    5.0   0.3      0.01        30      46      69 ..     449     472 ..     443     540 .. 0.81
   3 ?    2.2   0.0     0.077   2.3e+02      58      91 ..     508     539 ..     491     585 .. 0.76
   4 ?   -1.7   0.0       1.3   3.8e+03      50      69 ..     590     609 ..     569     621 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.047
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlldaesgkv..vhslsvksekavtcl 87 
                   +++W  + k+L v+ + g++ +++++++++  ++++++++++ v+ +
   CCD24563.1 375 CCIQWISNSKFL-VGDDSGSITFFKINNTNIefLNKFKAQNQQ-VCGM 420
                  578899999987.799999999999888754227788877774.6555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.01
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaes 69 
                   + +++lLav+ +d+++ l ++e+
   CCD24563.1 449 INSNNSLLAVGGNDNSCTLWNIEN 472
                  567888999999999999888876 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.077
  ANAPC4_WD40  58 sdgevrlldaesgkvvhslsvksekavtclgWge 91 
                  +d ++++ + ++g +++++++  +  vt+l W++
   CCD24563.1 508 KDRKIKFWHTKTGILLNEFKTCGQ--VTSLIWSK 539
                  566677777777777777766655..67776654 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 1.3
  ANAPC4_WD40  50 gklLavaysdgevrlldaes 69 
                   + +++a +d ++r+++  s
   CCD24563.1 590 STSICIAANDETIRFYKLWS 609
                  45566677777776665433 PP

>> RAB3GAP2_N  Rab3 GTPase-activating protein regulatory subunit N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00015      0.45      60      93 ..     298     332 ..     276     348 .. 0.84
   2 ?   -1.8   0.0      0.48   1.4e+03      58      97 ..     372     403 ..     344     417 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00015
  RAB3GAP2_N  60 ilclplss.kssqgspdwtviavGlssGylrfyte 93 
                 + c++++s +ss++ +d+t+ +vG+++G+l+++++
  CCD24563.1 298 VTCVSFDStNSSSNIYDSTYFLVGTKNGSLLLFDQ 332
                 78999999777888******************986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.48
  RAB3GAP2_N  58 tailclplsskssqgspdwtviavGlssGylrfytengel 97 
                 ++ +c+ + s        ++  +vG +sG++ f++ n++ 
  CCD24563.1 372 SCFCCIQWIS--------NSKFLVGDDSGSITFFKINNTN 403
                 4555555555........55678999********998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 4252.87
//
Query:       CCD24564.1  [L=529]
Description: hypothetical protein NDAI_0D02500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     5e-110  368.5  38.0     5e-110  368.5  38.0    1.5  2  DIE2_ALG10  DIE2/ALG10 family


Domain annotation for each model (and alignments):
>> DIE2_ALG10  DIE2/ALG10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.14   2.5e+03     202     229 ..      30      55 ..       3      63 .. 0.44
   2 !  368.5  38.0  2.8e-114    5e-110       2     396 .]      66     461 ..      65     461 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.14
  DIE2_ALG10 202 slkkllkkllkilkkllpyllvlvlFaa 229
                 ++k+ +++  +++ ++l y l+l+ F++
  CCD24564.1  30 NFKEEITN--AFILNFLSYPLILLYFLI 55 
                 33333332..245555555555555543 PP

  == domain 2  score: 368.5 bits;  conditional E-value: 2.8e-114
  DIE2_ALG10   2 pepylDEiFHvpQaqkYckgkfkeWdpkiTTpPGLYllsvlllkllklelslselc.slavlRlvnllllllllplllrrllkkkkkeskekkavlsal 99 
                 p++++DE FH++Q+ +Y++g++++WdpkiTTpPGLY+l++l +k++++   ++++  +l++lRl+nl++ l++lp+++ r + +       ++  ++ +
  CCD24564.1  66 PYEFIDEKFHINQTLTYLNGHWTQWDPKITTPPGLYILGWLNYKIVHIIPFIKSWFsDLTTLRLTNLFGGLIVLPIFILRPIFQ------LNAVGFWPV 158
                 789********************************************988888876599*****************99986543......34589**** PP

  DIE2_ALG10 100 nlalfPllfffsfLYYTDvlStllvlla.......yllalkkkkklsallglvsllfRQTNivWvvfvaglevvktleeakkkkkkskkeekslkeled 191
                 +l++fPll +f++LYYTDv+St+++l++        +   k + ++s+ l+l+s+lfRQTNivW+ f++++ v+   ++a  +kk ++++      +++
  CCD24564.1 159 SLMCFPLLSTFYYLYYTDVWSTVFILWSltvaltlPFGDNKWSIWFSSGLALISCLFRQTNIVWTGFIMIIVVE---RKAIIDKKFDNHT------FNN 248
                 ****************************5555444333444447999***********************9988...5666666654434......559 PP

  DIE2_ALG10 192 llklllsllsslkkllkkllkilkkllpyllvlvlFaaFvvwNggivlGdksnHeatlhlpQllYfllfiaffslplllskllklkellkallklslls 290
                 +lkl+++ ++++++l          +lpy++++vlFa+F++wN++i+lGdksnH+a++hl+Ql+Y+++f++++slpl++s     k ++k +l ++ l+
  CCD24564.1 249 FLKLFIHSIDQFNML----------VLPYFVNFVLFALFLIWNRSITLGDKSNHSAGIHLVQLFYCFTFLTVLSLPLWYS-----KVFMKLYLIRWRLK 332
                 999999999988444..........79****************************************************8.....45899999999999 PP

  DIE2_ALG10 291 llltllllllillivkkftivHpflLADNRHYtFYiwrrllkrh.pliky.llvpvYllslwlvlealaksks.....................vllvl 366
                 l+ t++ ll+i+l++++ft +HpflLADNRHYtFY++++l+ ++ +liky l++p+Y++s+++++  +++s+                      +++ l
  CCD24564.1 333 LFRTIFELLMIMLVIRYFTKIHPFLLADNRHYTFYLFKKLIGNKhKLIKYfLMAPIYHFSTFVYMGLIKESELnltlttqqifknsyelpiqltHISRL 431
                 999*************************************976549****999*************99766659************************* PP

  DIE2_ALG10 367 alllatllslvpapLlEpRYfiiPyvllrl 396
                 al+++t++++vp+pL+EpRY+i+Py+++r+
  CCD24564.1 432 ALVVCTIFTIVPSPLFEPRYYILPYFFWRI 461
                 ****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 3652.41
//
Query:       CCD24565.1  [L=550]
Description: hypothetical protein NDAI_0D02510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-29  101.3   0.0    5.1e-29  101.3   0.0    3.1  4  SMI1_KNR4  SMI1 / KNR4 family (SUKH-1)


Domain annotation for each model (and alignments):
>> SMI1_KNR4  SMI1 / KNR4 family (SUKH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.0   2.8e-33   5.1e-29       1     132 [.     128     312 ..     128     313 .. 0.87
   2 ?   -3.0   0.0       0.5     9e+03      90     105 ..     315     333 ..     314     356 .. 0.71
   3 ?   -2.5   0.7      0.35   6.3e+03      55      55 ..     369     369 ..     326     409 .. 0.60
   4 ?   -2.1   3.3      0.27   4.8e+03       5      69 ..     469     531 ..     467     545 .. 0.63

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 2.8e-33
                 ---HHHHHHHHHHHTS---HHHHHHHHHHTSEEEEETT...SEEETTEEEEEE-T....HHHHS................................... CS
   SMI1_KNR4   1 pateedlqefekdlgikLPndyreflkltnGgelfges...nglifglkllslde....ieeer................................ees 60 
                 p+t +d++ +e+dl i +P++++++++ ++G+e  ++    +g+i+g  l++ld+    ++ +r                                +++
  CCD24565.1 128 PCTLNDIANVEEDLEIFFPPSVKASFRVHDGQEDLESMtgtSGIIYGMPLMTLDQivamSQTWRkvaknmnkihhsnnqsrsnlpsnnnstssfhqQQQ 226
                 8******************************7777777788**************98855555599999999999999999998888877777766444 PP

                 ....HHHCCCHHH.HHHCHHCC.........SST.TEEEEEEETTCEEEECEEEE..TTTTEEEECC.HHHGG-EEEESSHHHHHH CS
   SMI1_KNR4  61 rssseeladdkek.kkiprqra.........lph.gwipfatdgggnyicidlsp..qgeegqvilf.rdddekfqiadsfgdfll 132
                 +++++++a+++ k ++ip+q++         ++h +wip+ td++gn++++dl+p   g++gq+i+f r+ d+k+++a+++g+fll
  CCD24565.1 227 QQQQQQQAKNQFKlPFIPEQQSfppnhiltvYAHpNWIPLLTDNAGNHVGVDLAPgpMGKYGQIIIFgREWDTKYVVASNWGEFLL 312
                 4444666666677799999999*********6666********************************7767**************8 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.5
                 EEE.TTCEEEECEEEE..T CS
   SMI1_KNR4  90 atd.gggnyicidlsp..q 105
                 a+d ++gn++++d ++   
  CCD24565.1 315 ANDlEAGNWLLVDDNDdfF 333
                 5544889999988777443 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.35
                 H CS
   SMI1_KNR4  55 e 55 
                 +
  CCD24565.1 369 Q 369
                 1 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.27
                 HHHHHHHHHHTS---HHHHHHHHHHTSEEEEETTSEEETTEEEEEE-THHHHS.......HHHCC CS
   SMI1_KNR4   5 edlqefekdlgikLPndyreflkltnGgelfgesnglifglkllsldeieeereesrssseelad 69 
                 edl+++e +l+  + nd  e+ k  +   +++e + + +++++   ++++e +ee+r++++e+ +
  CCD24565.1 469 EDLSRIEDELDNDFENDEAELTK--DEELIGEEPSTTNEQQDIVADEQTKEDNEEDRKEQQEQHQ 531
                 78888888888888888888885..3333333334455777777777777777666666544332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3627  (0.202298); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                       113  (0.00630264); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.49
# Mc/sec: 3370.96
//
Query:       CCD24566.1  [L=217]
Description: hypothetical protein NDAI_0D02520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-17   63.2   4.8    1.4e-17   63.2   4.8    2.4  2  Spo12     Spo12 family


Domain annotation for each model (and alignments):
>> Spo12  Spo12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.6      0.19   3.5e+03      13      19 ..     134     140 ..     134     144 .. 0.83
   2 !   63.2   4.8   8.1e-22   1.4e-17       2      35 .]     147     180 ..     146     180 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.19
       Spo12  13 qKLnahK 19 
                 +KLn +K
  CCD24566.1 134 KKLNSIK 140
                 79*9998 PP

  == domain 2  score: 63.2 bits;  conditional E-value: 8.1e-22
       Spo12   2 SPTDnllSPCsqKLnahKsKlfkakskPtkllFa 35 
                 SPTD+llSPCsqKLn+hKsKlf  ks+Ptkl+Fa
  CCD24566.1 147 SPTDKLLSPCSQKLNDHKSKLFVNKSNPTKLNFA 180
                 9*********************999********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1055  (0.0588432); expected 358.6 (0.02)
Passed bias filter:                      199  (0.0110993); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1664.32
//
Query:       CCD24567.1  [L=316]
Description: hypothetical protein NDAI_0D02530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-22   78.1   0.9    1.2e-21   77.6   0.9    1.2  1  Band_7    SPFH domain / Band 7 family
  ------ inclusion threshold ------
      0.085   13.0   0.3       0.19   11.9   0.3    1.6  1  Med2      Mediator complex subunit 2


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.9   1.3e-25   1.2e-21       3     168 ..      66     235 ..      64     245 .. 0.90

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 1.3e-25
      Band_7   3 ieegevgvvvr..fGklsrvlepGlhfilPfgrsvtvvsvrvqtldvsvsltvptkDglpvtidvtviy..rvpddapklvaaveresanldnlirrvl 97 
                 ++ g++++v+    G   r+++ G+hf +P++++ ++++vr    +v     + tkD ++v+i+ +v    +v  + p +++++  ++++ ++++ +++
  CCD24567.1  66 VDGGHRAIVYSriSGVSPRIYPEGTHFAIPWIETPIIYDVRAKPRNVAS--LTGTKDLQMVNITCRVLSrpNV-GQLPTIYRTL--GQDYDERVLPSIV 159
                 899******6668888888******************************..777*********9999773356.9999999999..************* PP

      Band_7  98 esalrevisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaea.....q 168
                 +++l++v++++++ +l+  re++ + +++ l  +++++++ + dv+it  +++pe+ +a++akq a+++a     +
  CCD24567.1 160 NEVLKAVVAQFNASQLITQREKVSKLIRENLMGRANRFNILLDDVSITFMTFSPEFTNAVEAKQIAQQDAqraafV 235
                 **********************************************************************766442 PP

>> Med2  Mediator complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.3   2.1e-05      0.19      36      94 ..     167     241 ..     155     246 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.1e-05
        Med2  36 vtGfnnql............qksLkekikkFhsiLDdleiklnd.aksyveqlveikkekeeekeke....eeerq 94 
                 v+ fn ++             + L  + ++F+ +LDd+ i++ + + ++ ++++  k+  ++  ++     ++ rq
  CCD24567.1 167 VAQFNASQlitqrekvskliRENLMGRANRFNILLDDVSITFMTfSPEFTNAVEA-KQIAQQDAQRAafvvDKARQ 241
                 334444444444445556668899999**************98824556555555.44444444444454433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2461.22
//
Query:       CCD24568.1  [L=236]
Description: hypothetical protein NDAI_0D02540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-36  122.7   0.1    1.5e-12   48.0   0.0    3.1  3  Ank_2     Ankyrin repeats (3 copies)
    5.2e-33  112.7   0.0    1.1e-11   44.7   0.0    5.9  6  Ank_5     Ankyrin repeats (many copies)
    3.6e-32  110.3   0.5    1.2e-10   41.7   0.0    4.4  4  Ank_4     Ankyrin repeats (many copies)
    4.9e-31  103.3   0.1    0.00052   20.3   0.0    6.2  6  Ank_3     Ankyrin repeat
    1.6e-27   94.7   0.2    3.2e-06   27.3   0.0    6.1  6  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   1.6e-13   5.8e-10      28      80 ..       8      72 ..       2      75 .. 0.82
   2 !   48.0   0.0   4.1e-16   1.5e-12      25      83 .]      78     143 ..      67     143 .. 0.83
   3 !   33.4   0.0   1.4e-11   4.9e-08      25      83 .]     145     211 ..     141     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 1.6e-13
       Ank_2 28 taLhyAakngnleivklLleh..........adndgrtpLhyAarsghleivklLlek..gadin 80
                 +Lh A++n+ l  v+ ++eh           d+d+rt+Lh+A++++++eiv +Ll +  +ad++
  CCD24568.1  8 YPLHQACMNNELSKVQEIVEHmtnpsveivaKDSDNRTALHWAISFQNEEIVTYLLSHmkDADVD 72
                69********66669****9887777666644499*********************765567765 PP

  == domain 2  score: 48.0 bits;  conditional E-value: 4.1e-16
       Ank_2  25 ngktaLhyAakngnleivklLleh....ad...ndgrtpLhyAarsghleivklLlekgadinlkd 83 
                   +t++h+A + gn +i+k L+e     ++    +g+tp+h+A++++hl+i+k+Lle+ga++ +kd
  CCD24568.1  78 SLWTPIHIASSVGNSNILKQLIEGrnvdLNlqtVQGTTPIHLAVSKKHLQICKFLLENGASVRIKD 143
                 449*******************9555562255699***************************9997 PP

  == domain 3  score: 33.4 bits;  conditional E-value: 1.4e-11
       Ank_2  25 ngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlek.gadinlkd 83 
                 +g+ +Lh Aa+ g+  +v++L+++        d++g+tpL++A  +gh +++ lL++  +ad++l d
  CCD24568.1 145 QGQLPLHRAASIGSMGLVEMLCKEgrspvnvKDKQGWTPLFHALAEGHGDVAVLLVNTfNADYDLED 211
                 799**********9999*****9777885555599*********9***9999999966889988765 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.049   1.8e+02      18      36 ..       8      26 ..       2      34 .. 0.76
   2 !   22.3   0.0   3.4e-08   0.00012      10      56 .]      37      86 ..      30      86 .. 0.89
   3 !   24.6   0.0   6.5e-09   2.3e-05       7      52 ..      71     116 ..      63     116 .. 0.83
   4 !   44.7   0.0     3e-15   1.1e-11       2      56 .]      99     153 ..      98     153 .. 0.94
   5 !   36.2   0.0   1.5e-12   5.4e-09       1      53 [.     132     184 ..     132     187 .. 0.98
   6 !    9.3   0.1   0.00039       1.4      18      55 ..     182     220 ..     182     221 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.049
       Ank_5 18 tpLhvAakygaadvvrlLl 36
                 pLh+A+ ++ ++ v++++
  CCD24568.1  8 YPLHQACMNNELSKVQEIV 26
                7******988777776666 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 3.4e-08
       Ank_5 10 nrldgggntpLhvAakygaadvvrlLl..argadlnltdsrG.ltaldlA 56
                 ++d +  t+Lh+A++ ++ ++v +Ll  +  ad ++  ++  +t++++A
  CCD24568.1 37 VAKDSDNRTALHWAISFQNEEIVTYLLshMKDADVDTLKDDSlWTPIHIA 86
                56677777***************************99999999*****99 PP

  == domain 3  score: 24.6 bits;  conditional E-value: 6.5e-09
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGlta 52 
                 +d+   d  + tp+h+A++ g++++++ L+  r++dlnl++ +G t+
  CCD24568.1  71 VDTLKDDSLW-TPIHIASSVGNSNILKQLIeGRNVDLNLQTVQGTTP 116
                 4444444444.*********************************998 PP

  == domain 4  score: 44.7 bits;  conditional E-value: 3e-15
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 +e +++d+n +   g+tp+h+A+++ +++++++Ll++ga+ +++d++G+++l+ A
  CCD24568.1  99 IEGRNVDLNLQTVQGTTPIHLAVSKKHLQICKFLLENGASVRIKDKQGQLPLHRA 153
                 56559***********************************************976 PP

  == domain 5  score: 36.2 bits;  conditional E-value: 1.5e-12
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltal 53 
                 Lle+g a+v  +d+ g++pLh Aa+ g+  +v++L+ + ++  n++d++G+t+l
  CCD24568.1 132 LLENG-ASVRIKDKQGQLPLHRAASIGSMGLVEMLCkEGRSPVNVKDKQGWTPL 184
                 89***.***********************************************8 PP

  == domain 6  score: 9.3 bits;  conditional E-value: 0.00039
       Ank_5  18 tpLhvAakygaadvvrlLl.argadlnltdsrGltaldl 55 
                 tpL +A   g+ dv+ lL+  ++ad++l d++G  a+d+
  CCD24568.1 182 TPLFHALAEGHGDVAVLLVnTFNADYDLEDNNGIKAVDV 220
                 788899999************************999986 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   1.2e-09   4.2e-06       4      55 .]       9      63 ..       6      63 .. 0.91
   2 !   41.5   0.0   3.8e-14   1.4e-10       1      54 [.      43      98 ..      43      99 .. 0.93
   3 !   41.7   0.0   3.3e-14   1.2e-10       2      54 ..     114     165 ..     101     166 .. 0.96
   4 !   15.3   0.0   6.4e-06     0.023      27      54 ..     173     199 ..     167     200 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.2e-09
       Ank_4  4 aLhyaaisgrlelvrlLlek..gadinaq.dnrsGetalhiAakrgnveilklLl 55
                +Lh+a++ + l  v+ ++e+  ++++  + ++++ +talh A+++ n ei+ +Ll
  CCD24568.1  9 PLHQACMNNELSKVQEIVEHmtNPSVEIVaKDSDNRTALHWAISFQNEEIVTYLL 63
                6******************876777777777999********************8 PP

  == domain 2  score: 41.5 bits;  conditional E-value: 3.8e-14
       Ank_4  1 eltaLhyaaisgrlelvrlLlek..gadinaqdnrsGetalhiAakrgnveilklL 54
                ++taLh+a++++++e+v +Ll++  +ad++  +++s +t++hiA + gn +ilk L
  CCD24568.1 43 NRTALHWAISFQNEEIVTYLLSHmkDADVDTLKDDSLWTPIHIASSVGNSNILKQL 98
                68********************986799***********************99866 PP

  == domain 3  score: 41.7 bits;  conditional E-value: 3.3e-14
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 +t++h a+++ +l+++++Lle+ga++    +++G+ +lh+Aa++g+   +++L
  CCD24568.1 114 TTPIHLAVSKKHLQICKFLLENGASVRIK-DKQGQLPLHRAASIGSMGLVEML 165
                 89************************998.****************9999887 PP

  == domain 4  score: 15.3 bits;  conditional E-value: 6.4e-06
       Ank_4  27 inaqdnrsGetalhiAakrgnveilklL 54 
                 +n   +++G+t+l +A+  g+ +++ lL
  CCD24568.1 173 VNVK-DKQGWTPLFHALAEGHGDVAVLL 199
                 7887.*************9999998887 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00022      0.78       4      24 ..       8      28 ..       6      34 .. 0.87
   2 !   17.6   0.0   1.1e-06    0.0038       1      24 [.      42      65 ..      42      72 .. 0.89
   3 !   19.7   0.0   2.2e-07   0.00081       3      30 ..      80     107 ..      78     108 .. 0.95
   4 !   20.3   0.0   1.4e-07   0.00052       4      30 ..     115     140 ..     112     141 .. 0.92
   5 !   13.2   0.0   2.9e-05       0.1       2      29 ..     146     173 ..     145     175 .. 0.86
   6 !   14.2   0.0   1.4e-05     0.049       2      30 ..     180     208 ..     179     209 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00022
       Ank_3  4 tpLhlAarsgnleivkfLlen 24
                +pLh+A++++ l+ v+ ++e+
  CCD24568.1  8 YPLHQACMNNELSKVQEIVEH 28
                69**********889999985 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 1.1e-06
       Ank_3  1 nGetpLhlAarsgnleivkfLlen 24
                +++t+Lh+A++++n eiv +Ll +
  CCD24568.1 42 DNRTALHWAISFQNEEIVTYLLSH 65
                589*******************95 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 2.2e-07
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                 +tp+h+A + gn +i+k L+e +++d+n
  CCD24568.1  80 WTPIHIASSVGNSNILKQLIEGRNVDLN 107
                 8*************************99 PP

  == domain 4  score: 20.3 bits;  conditional E-value: 1.4e-07
       Ank_3   4 tpLhlAarsgnleivkfLlenkgadvn 30 
                 tp+hlA++  +l i+kfLle +ga v+
  CCD24568.1 115 TPIHLAVSKKHLQICKFLLE-NGASVR 140
                 9*******************.8**987 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 2.9e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+ pLh+Aa+ g+  +v++L+++   +v
  CCD24568.1 146 GQLPLHRAASIGSMGLVEMLCKEGRSPV 173
                 899*****************99665555 PP

  == domain 6  score: 14.2 bits;  conditional E-value: 1.4e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvn 30 
                 G+tpL++A+  g+ +++ +L++ ++ad +
  CCD24568.1 180 GWTPLFHALAEGHGDVAVLLVNTFNADYD 208
                 9********************99999976 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.017        60       4      14 ..       8      18 ..       8      37 .. 0.74
   2 !   21.1   0.0   8.4e-08    0.0003       1      31 [.      42      76 ..      42      77 .. 0.82
   3 !   17.5   0.0   1.2e-06    0.0042       3      31 ..      80     110 ..      79     111 .. 0.89
   4 !   27.3   0.0   8.9e-10   3.2e-06       2      32 .]     113     144 ..     112     144 .. 0.94
   5 !   11.6   0.0   8.2e-05       0.3       2      31 ..     146     177 ..     145     178 .. 0.81
   6 !    5.2   0.0    0.0089        32       2      31 ..     180     211 ..     179     212 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.017
                BHHHHHHHHTT CS
         Ank  4 TPLHlAatngk 14
                +PLH A++n+ 
  CCD24568.1  8 YPLHQACMNNE 18
                6******8764 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 8.4e-08
                TSBBHHHHHHHHTTHHHHHHHH.T..TTST.TCBT CS
         Ank  1 dGnTPLHlAatngkkriiklLL.h..GAnl.nald 31
                d +T+LH+A+++ +++i+ +LL h   A++ +++d
  CCD24568.1 42 DNRTALHWAISFQNEEIVTYLLsHmkDADVdTLKD 76
                568*******************8764599944555 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.2e-06
                 BBHHHHHHHHTTHHHHHHHHTT..TSTTCBT CS
         Ank   3 nTPLHlAatngkkriiklLLhG..Anlnald 31 
                 +TP H+A++ g+ +i+k L+ G   +ln+++
  CCD24568.1  80 WTPIHIASSVGNSNILKQLIEGrnVDLNLQT 110
                 7*******************76569999987 PP

  == domain 4  score: 27.3 bits;  conditional E-value: 8.9e-10
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 G TP HlA++ ++++i+k+LL +GA++ ++d+
  CCD24568.1 113 GTTPIHLAVSKKHLQICKFLLeNGASVRIKDK 144
                 89*******************99****99985 PP

  == domain 5  score: 11.6 bits;  conditional E-value: 8.2e-05
                 SBBHHHHHHHHTTHHHHHHHH.TT.TSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hG.Anlnald 31 
                 G  PLH+Aa++g+   +++L   G + +n +d
  CCD24568.1 146 GQLPLHRAASIGSMGLVEMLCkEGrSPVNVKD 177
                 566******999999***99977856679988 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.0089
                 SBBHHHHHHHHTTHHHHHHHH.T.TTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.h.GAnlnald 31 
                 G+TPL  A  +g+ +++ lL+    A+ ++ d
  CCD24568.1 180 GWTPLFHALAEGHGDVAVLLVnTfNADYDLED 211
                 9*****99877887799999853467766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       605  (0.0337442); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1834.32
//
Query:       CCD24569.1  [L=1201]
Description: hypothetical protein NDAI_0D02550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-27   94.7   5.7    1.5e-11   44.7   0.1    3.7  3  Ank_2     Ankyrin repeats (3 copies)
    3.9e-23   83.0  26.7    5.8e-10   39.6   1.1    4.6  4  SPX       SPX domain
    5.9e-23   80.9   7.0    9.9e-07   29.2   0.0    5.0  4  Ank_4     Ankyrin repeats (many copies)
    1.2e-16   59.1   8.7      0.059   13.9   0.1    6.7  6  Ank_3     Ankyrin repeat
    2.7e-16   59.2  14.7     0.0045   17.4   0.0    6.9  6  Ank       Ankyrin repeat
    3.6e-16   59.0   8.7      0.011   16.0   0.3    5.7  5  Ank_5     Ankyrin repeats (many copies)


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.3   6.3e-14   1.9e-10      13      80 ..     434     508 ..     426     511 .. 0.80
   2 !    9.5   0.1    0.0005       1.5      28      48 ..     533     553 ..     514     571 .. 0.60
   3 !   44.7   0.1     5e-15   1.5e-11       1      73 [.     572     656 ..     572     667 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 6.3e-14
       Ank_2  13 vklLlegadpnkngktaLhyAakngnleivklLleh........adndgrtpLhyAarsghleivklLlek.gadin 80 
                 +k Ll+ +d+   +kt+LhyAa+ g++ +vklLl+         +d + rtpL +A+ ++h+++++lLl   ++++n
  CCD24569.1 434 LKVLLNAKDI--YEKTPLHYAAELGKVSFVKLLLKSslldnidpLDTNLRTPLTLAINNNHIDVMELLLTLgNSNPN 508
                 5777755666..479**********9999*****966766666666889********99**********54345555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0005
       Ank_2  28 taLhyAakngnleivklLleh 48 
                 +++ +A++++n e++klLl++
  CCD24569.1 533 SPISIACHSNNYEAIKLLLNY 553
                 455555555555555555553 PP

  == domain 3  score: 44.7 bits;  conditional E-value: 5e-15
       Ank_2   1 LhlAakngnl.elvklLl.egadpn..k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLl 73 
                 Lh+ +kng++ +l+klLl +gadpn  +  n++t+++yA+++ +  +vk Ll++      +d++g +pLh+  ++++ ei+++Ll
  CCD24569.1 572 LHIVCKNGADaKLIKLLLaHGADPNrmDdyNKWTPIFYAIQESHPVTVKELLNNgarlniQDDEGISPLHLVLWESNVEILNILL 656
                 8******95549*************98358**************999******88786666699*********99********99 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.4   9.9e-10     3e-06       1      34 [.       1      36 [.       1      55 [. 0.87
   2 !   26.8   4.7   1.6e-09   4.7e-06     170     233 ..      62     123 ..      37     140 .. 0.65
   3 !   39.6   1.1   1.9e-13   5.8e-10     324     383 ..     135     193 ..     119     194 .. 0.85
   4 ?    4.3   1.3     0.011        32      92     183 ..     287     452 ..     202     474 .. 0.64

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 9.9e-10
         SPX  1 MKFakeLeenlv..pEWrdaYldYkqLKKlIkkvqr 34
                MKF+k+Le+     pE    ++dYk+LKKlIk+++ 
  CCD24569.1  1 MKFGKYLESRQLelPEYNGYFIDYKALKKLIKQLAI 36
                ********98777*******************9986 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1.6e-09
         SPX 170 ksersyetrplraekeFferLdseLnkvetFykakeeefterlesLrkqlealrprrikeaeer 233
                 +++  y+ +++++++ Ff  +d eL+k+++Fyk+ke ++t ++++L++ +++l+ ++ +e +++
  CCD24569.1  62 DESVLYQ-TLQENKSTFFFKMDRELEKINNFYKEKELNLTIKFNILQSKFNKLK-LKLNELSSS 123
                 3333333.577799**************************************93.333322222 PP

  == domain 3  score: 39.6 bits;  conditional E-value: 1.9e-13
         SPX 324 enrvklkkakkklkkafvelYrgLelLKsYqeLNrtAFrKIlKKfDKvtaltaskrymke 383
                  ++ +l + k+ l + f+++ r+L    +++eLNrt+F+K lKK+DK+++ + ++ y++ 
  CCD24569.1 135 ASQINLIAFKN-LFDTFIAFQRDLNHFEQFIELNRTGFSKALKKWDKRSHSHEKEFYLET 193
                 47788888888.9**************************************999998876 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.011
         SPX  92 e.........................................................slprrsplsrssrssssygglvssppsansssssddssesn 133
                 e                                                         s+ + ++ls + ++ +s+++l+ +++  ++++s+dd +   
  CCD24569.1 287 EsklddwytelinisklkdhnkksnqilsfipnkiepsfsntrlltlwltklfklligSPMDDETLSIFYDKGKSFMNLTYNNNITSNNDSDDDAEILT 385
                 022334444555555555555566666666666666666666666666666666666666666666666666666666666666555555555555555 PP

         SPX 134 pa......................dssssssssesesssssspsllrrlfsesesreeksersyetrplrae 183
                 ++                      +s s+s+ +++ +++++++++++rl     +   ++++ ye++pl + 
  CCD24569.1 386 KKnifheatsclydsrlfilqnalSSLSPSKTTTTTTTTTTANERINRL-----KVLLNAKDIYEKTPLHYA 452
                 449**********************************************.....789999999999999843 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   4.6e-08   0.00014       3      55 .]     447     500 ..     430     500 .. 0.89
   2 !   12.8   0.3   4.5e-05      0.13       4      46 ..     534     579 ..     533     584 .. 0.87
   3 !   26.3   0.0   2.8e-09   8.3e-06       3      47 ..     570     615 ..     568     617 .. 0.87
   4 !   29.2   0.0   3.3e-10   9.9e-07       4      55 .]     606     656 ..     606     656 .. 0.96

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 4.6e-08
       Ank_4   3 taLhyaaisgrlelvrlLlek.gad.inaqdnrsGetalhiAakrgnveilklLl 55 
                 t+Lhyaa+ g++  v+lLl +   d i+   + + +t+l  A+ ++++++ +lLl
  CCD24569.1 447 TPLHYAAELGKVSFVKLLLKSsLLDnIDPL-DTNLRTPLTLAINNNHIDVMELLL 500
                 89*****************65356666665.66889*****************98 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.5e-05
       Ank_4   4 aLhyaaisgrlelvrlLlek.gadinaqdn..rsGetalhiAakrg 46 
                 ++  a++s+++e+++lLl++   +in ++n  + G+  lhi++k+g
  CCD24569.1 534 PISIACHSNNYEAIKLLLNYiPHQINLSTNfdAKGLGTLHIVCKNG 579
                 7889**************9977778888666677**********99 PP

  == domain 3  score: 26.3 bits;  conditional E-value: 2.8e-09
       Ank_4   3 taLhyaai.sgrlelvrlLlekgadinaqdnrsGetalhiAakrgn 47 
                 ++Lh  ++   + +l++lLl++gad+n+ d+ + +t++ +A++ ++
  CCD24569.1 570 GTLHIVCKnGADAKLIKLLLAHGADPNRMDDYNKWTPIFYAIQESH 615
                 678888887777799***************************8766 PP

  == domain 4  score: 29.2 bits;  conditional E-value: 3.3e-10
       Ank_4   4 aLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 +++ya+++++  +v+ Ll++ga +n q +++G ++lh +++ +nveil  Ll
  CCD24569.1 606 PIFYAIQESHPVTVKELLNNGARLNIQ-DDEGISPLHLVLWESNVEILNILL 656
                 69*************************.*******************98876 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   6.4e-05      0.19       3      23 ..     446     466 ..     444     475 .. 0.90
   2 !   11.5   0.1   0.00012      0.36       2      26 ..     480     504 ..     479     509 .. 0.84
   3 !   11.1   0.1   0.00016      0.48       4      25 ..     533     553 ..     532     561 .. 0.86
   4 !   13.9   0.1     2e-05     0.059       6      30 ..     572     596 ..     571     597 .. 0.95
   5 !    8.6   0.0    0.0011       3.3       1      31 []     602     631 ..     602     631 .. 0.91
   6 ?   -0.1   0.0      0.74   2.2e+03       1      22 [.     635     656 ..     635     659 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.4e-05
       Ank_3   3 etpLhlAarsgnleivkfLle 23 
                  tpLh+Aa+ g+++ vk+Ll+
  CCD24569.1 446 KTPLHYAAELGKVSFVKLLLK 466
                 6******************98 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00012
       Ank_3   2 GetpLhlAarsgnleivkfLlenkg 26 
                  +tpL lA+ +++++++++Ll   +
  CCD24569.1 480 LRTPLTLAINNNHIDVMELLLTLGN 504
                 69*******************9433 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00016
       Ank_3   4 tpLhlAarsgnleivkfLlenk 25 
                 +p+ +A++s+n+e +k+Ll+ +
  CCD24569.1 533 SPISIACHSNNYEAIKLLLN-Y 553
                 7999***************9.3 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 2e-05
       Ank_3   6 LhlAarsgnle.ivkfLlenkgadvn 30 
                 Lh+++++g  + ++k+Ll  +gad+n
  CCD24569.1 572 LHIVCKNGADAkLIKLLLA-HGADPN 596
                 9*********779******.9****9 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.0011
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkgadvna 31 
                 n +tp+++A+   ++  vk Ll+ +ga +n+
  CCD24569.1 602 NKWTPIFYAIQESHPVTVKELLN-NGARLNI 631
                 579************77******.8*99986 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.74
       Ank_3   1 nGetpLhlAarsgnleivkfLl 22 
                 +G +pLhl++   n+ei+  Ll
  CCD24569.1 635 EGISPLHLVLWESNVEILNILL 656
                 589****998666666666555 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06    0.0045       2      23 ..     445     467 ..     444     477 .. 0.83
   2 !   12.8   0.3   4.1e-05      0.12       3      28 ..     481     508 ..     479     510 .. 0.87
   3 ?    3.2   0.1     0.046   1.4e+02       3      22 ..     532     551 ..     532     563 .. 0.79
   4 !   14.2   0.5   1.5e-05     0.045       6      31 ..     572     599 ..     572     600 .. 0.82
   5 !   11.8   0.0     9e-05      0.27       3      32 .]     604     634 ..     602     634 .. 0.93
   6 ?    4.1   0.2     0.024        71       2      22 ..     636     656 ..     635     677 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-06
                 SBBHHHHHHHHTTHHHHHHHH.T CS
         Ank   2 GnTPLHlAatngkkriiklLL.h 23 
                   TPLH+Aa  gk++ +klLL +
  CCD24569.1 445 EKTPLHYAAELGKVSFVKLLLkS 467
                 57******************933 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.1e-05
                 BBHHHHHHHHTTHHHHHHHH.TT.TSTT CS
         Ank   3 nTPLHlAatngkkriiklLL.hG.Anln 28 
                 +TPL lA++n++ ++ +lLL  G +n+n
  CCD24569.1 481 RTPLTLAINNNHIDVMELLLtLGnSNPN 508
                 7******************964778888 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.046
                 BBHHHHHHHHTTHHHHHHHH CS
         Ank   3 nTPLHlAatngkkriiklLL 22 
                 ++P  +A++ ++ + iklLL
  CCD24569.1 532 FSPISIACHSNNYEAIKLLL 551
                 578999**99*********9 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 1.5e-05
                 HHHHHHHTT.HHHHHHHH.TTTSTTCBT CS
         Ank   6 LHlAatngk.kriiklLL.hGAnlnald 31 
                 LH+ + ng  +  iklLL hGA++n  d
  CCD24569.1 572 LHIVCKNGAdAKLIKLLLaHGADPNRMD 599
                 899784333699*************877 PP

  == domain 5  score: 11.8 bits;  conditional E-value: 9e-05
                 BBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   3 nTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 +TP  +A+++ ++  +k+LL +GA ln++d+
  CCD24569.1 604 WTPIFYAIQESHPVTVKELLnNGARLNIQDD 634
                 8*******************88*******96 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.024
                 SBBHHHHHHHHTTHHHHHHHH CS
         Ank   2 GnTPLHlAatngkkriiklLL 22 
                 G +PLHl  ++ +++i+  LL
  CCD24569.1 636 GISPLHLVLWESNVEILNILL 656
                 99*****66888899999886 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   6.1e-05      0.18       7      36 ..     436     465 ..     432     468 .. 0.88
   2 !   16.0   0.3   3.8e-06     0.011       1      37 [.     469     504 ..     469     514 .. 0.79
   3 ?    2.6   0.0     0.059   1.8e+02      18      37 ..     533     552 ..     521     557 .. 0.87
   4 !   13.6   0.0   2.2e-05     0.066      19      53 ..     571     607 ..     560     610 .. 0.84
   5 !   14.9   0.2   8.5e-06     0.025       1      39 [.     622     657 ..     622     663 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.1e-05
       Ank_5   7 advnrldgggntpLhvAakygaadvvrlLl 36 
                 + +n++d +  tpLh+Aa+ g  + v+lLl
  CCD24569.1 436 VLLNAKDIYEKTPLHYAAELGKVSFVKLLL 465
                 67888888888******************9 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 3.8e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLl...a 37 
                 Ll+  ++d+ +++ +  tpL +A+++++ dv++lLl   +
  CCD24569.1 469 LLD--NIDPLDTNLR--TPLTLAINNNHIDVMELLLtlgN 504
                 666..4888888888..*******************5333 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.059
       Ank_5  18 tpLhvAakygaadvvrlLla 37 
                 +p+ +A++ ++ + ++lLl+
  CCD24569.1 533 SPISIACHSNNYEAIKLLLN 552
                 89****************95 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 2.2e-05
       Ank_5  19 pLhvAakygaadvvrlLl.argadlnltdsrG.ltal 53 
                  Lh+ +k+ga   +++Ll a+gad+n  d+++ +t++
  CCD24569.1 571 TLHIVCKNGADAKLIKLLlAHGADPNRMDDYNkWTPI 607
                 69*****777777777777****************97 PP

  == domain 5  score: 14.9 bits;  conditional E-value: 8.5e-06
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlarg 39 
                 Ll++g a++n +d +g +pLh+  +  + +++++Ll  +
  CCD24569.1 622 LLNNG-ARLNIQDDEGISPLHLVLWESNVEILNILL--P 657
                 89***.******************************..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       988  (0.0551063); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 8394.56
//
Query:       CCD24570.1  [L=1294]
Description: hypothetical protein NDAI_0D02560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-23   82.6  10.4    6.3e-20   71.4   2.4    4.5  4  RTT107_BRCT_6  Regulator of Ty1 transposition protein 107 BRC
    4.4e-18   65.0   0.0      3e-17   62.3   0.0    2.5  1  RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRC
    7.1e-12   45.5  11.3    0.00021   21.6   0.1    4.7  4  BRCT           BRCA1 C Terminus (BRCT) domain
    4.6e-07   29.7   0.0    0.00035   20.4   0.0    2.9  2  PTCB-BRCT      twin BRCT domain


Domain annotation for each model (and alignments):
>> RTT107_BRCT_6  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   1.1       1.4   6.1e+03      46      79 ..     289     322 ..     275     331 .. 0.74
   2 ?   -1.3   1.0      0.54   2.4e+03      19      52 ..     700     737 ..     685     791 .. 0.52
   3 !   71.4   2.4   1.4e-23   6.3e-20       1      86 [.    1101    1207 ..    1101    1213 .. 0.92
   4 !   25.5   1.2   2.6e-09   1.2e-05      65     111 ..    1233    1276 ..    1212    1279 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.4
  RTT107_BRCT_6  46 edlvknekkkkkekkkspeyvliatkasqvkkfk 79 
                      l kn+++ + +k++ ++ ++++  +s  k f+
     CCD24570.1 289 LKLKKNTTSGDGKKSQIFKNLYVTVSKSMSKDFN 322
                    4577888888888888888888888888888776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.54
  RTT107_BRCT_6  19 ggtevissiLkahG..ikevkvlsk..klkiedlvkne 52 
                    g  eviss   +h+  + + kv++   +++++d  +n+
     CCD24570.1 700 GELEVISSSQDSHSndVISNKVIEGknETEEQDDQSND 737
                    66677777777775223344566552222233333331 PP

  == domain 3  score: 71.4 bits;  conditional E-value: 1.4e-23
  RTT107_BRCT_6    1 kvFerakikkiNlvsdipggtevissiLkahGikevkvlsk..klkiedlvkn...................ekkkkkekkkspeyvliatkas 73  
                     k+Fer +i++ N+++di+gg+e+issiL++hGi++++vl+k  ++ ++dl++n                    ++ + +++ ++ey+lia+k+s
     CCD24570.1 1101 KLFERYGITNANIFQDITGGVETISSILRSHGIRHINVLKKntNFAKSDLMRNvqesnngsidmlrlnprtyGENDEPKEQVNVEYLLIAQKSS 1194
                     89***************************************999999******999999999999999998767777778888*********** PP

  RTT107_BRCT_6   74 qvkkfkkllkeek 86  
                     q+k+fk+++++++
     CCD24570.1 1195 QIKAFKRVMTKSQ 1207
                     *********9764 PP

  == domain 4  score: 25.5 bits;  conditional E-value: 2.6e-09
  RTT107_BRCT_6   65 yvliatkasqvkkfkkllkeekenkkvlvveWdWcvksifnlevdle 111 
                     +v   ++asq  + +  +++ k +   ++v+W+Wcv+sif+l++d++
     CCD24570.1 1233 HV---NEASQNASSEDAMATIKMTRVSMAVDWNWCVNSIFSLSCDFK 1276
                     33...5566666666677767889999****************9987 PP

>> RTT107_BRCT_5  Regulator of Ty1 transposition protein 107 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   6.7e-21     3e-17       8      89 ..     951    1042 ..     946    1053 .. 0.87

  Alignments for each domain:
  == domain 1  score: 62.3 bits;  conditional E-value: 6.7e-21
                     HTSSSXXX--EEEEESSS.TT..SSHHHHHHHHHTTEEE-S.....GCCT-SEEE-SS---SHHHHHHCCCTT..EEE-CHHHHHHHH.....H CS
  RTT107_BRCT_5    8 kkkkskpevkiravlTgceeevnkedsdkkkLrklGikivq.....eakkcntliApkilRTeKFLksLskap..kilspdfiedvLk.....k 89  
                     ++  + p ++i a+ T+c e+  ++  ++k L++lGi+i+      +++++n +iApk+ RT KFLks s++p  ++l p+fi dvLk     k
     CCD24570.1  951 AAFLHLPLYDIDAIPTNCLED--ITPFETKVLNRLGIRIYFtinseNMNTLNGIIAPKKSRTIKFLKSYSFQPlrYLLLPNFIYDVLKalrqgK 1042
                     56667889***********99..9****************9999988888**************************************776431 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.17   7.5e+02      46      78 ..      87     119 ..      83     120 .. 0.83
   2 !   20.9   0.2   7.7e-08   0.00034       4      53 ..     152     206 ..     149     234 .. 0.78
   3 !    6.4   0.5    0.0025        11       3      78 ..     303     386 ..     301     387 .. 0.70
   4 !   21.6   0.1   4.7e-08   0.00021       7      78 ..     418     495 ..     412     496 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.17
                 EEEESSSHSHHHHHHHHHHTTSEEEETHHHHHH CS
        BRCT  46 hlvvgepesrslkylealklnipivheewlldc 78 
                 h++v++++     ++ + +l+ip+v++ wl + 
  CCD24570.1  87 HIIVSNTINLPFYKMVTYDLMIPVVSIYWLEQV 119
                 7777777777788888999**********9876 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 7.7e-08
                 TTTTTEEEEEEESTSSHHHHHH...HHHHHHTTCEEESSCSTTSSEEEESSS....H CS
        BRCT   4 llfhgckfvitgvldnftrdel...eelikehGGkvttevskktthlvvgep....e 53 
                 l+f++ +f+i ++ ++ t+ e+    +li+ +GG++t+ +s+ +t +v+ +p    +
  CCD24570.1 152 LPFKDEIFYI-SK-SSVTKLEYifySKLIQYMGGTMTDLLSTSVTKIVTNDPndmvC 206
                 79********.55.55555555599*************************9955551 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0025
                 TTTTTTEEEEE...EESTSSHHHHHH......HHHHHHTTCEEESSC.STTSSEEEESSSHSHHHH...HHHHHHTTSEEEETHHHHHH CS
        BRCT   3 ellfhgckfvi...tgvldnftrdel......eelikehGGkvttev.skktthlvvgepesrslk...ylealklnipivheewlldc 78 
                 + +f+++ + +    ++  n     +       +li+ h Gk+tt + +++t+ l++++    + k    + a++++  i ++ w+ld+
  CCD24570.1 303 SQIFKNLYVTVsksMSKDFN-----InlqkfiTKLIRYHYGKITTKLtDPRTDTLITSTAMDPTYKdclSTNAKNKCNFIGTPFWILDM 386
                 67888888888544333333.....2233446***********8888688999999888855555565567777777788999999885 PP

  == domain 4  score: 21.6 bits;  conditional E-value: 4.7e-08
                 TTEEEEE.EESTSSHHHHHHHHHHHHTTCEEESSCSTT.SSEEEESSS....HSHHHHHHHHHHTTSEEEETHHHHHH CS
        BRCT   7 hgckfvi.tgvldnftrdeleelikehGGkvttevskk.tthlvvgep....esrslkylealklnipivheewlldc 78 
                 ++  f i ++++ + +r ++ +li ++ +  ++++s+k tthl+ + +    +  ++k++ a +++i+iv+  wl d+
  CCD24570.1 418 KNTRFNIsYTGFFGLQRLYIHNLILLLNANPMPQLSTKlTTHLISKFDpietHDNNKKLKIATARGIKIVSSFWLEDS 495
                 56778888999********************999966537888854448899999********************997 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0025        11      18      43 ..     176     201 ..     161     206 .. 0.91
   2 !   20.4   0.0   7.9e-08   0.00035       3      63 .]     424     491 ..     422     491 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0025
                 HHHHHTT-EEESSEETT-SEEEECSS CS
   PTCB-BRCT  18 klieamGaeyskdltksvTHLicksg 43 
                 kli+ mG+++++ l++svT  + +++
  CCD24570.1 176 KLIQYMGGTMTDLLSTSVTKIVTNDP 201
                 899****************9999886 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 7.9e-08
                 EEEECB-TTCHHHHHHHHHHTT-EEESSE.ETT-SEEEE......CSS-CHHHHHHHHCT-EEE-CHH CS
   PTCB-BRCT   3 icvtgysgddrkslqklieamGaeyskdl.tksvTHLic......ksgeGekyekAkkwgipvVsveW 63 
                 i++tg+ g +r ++ +li  + a+ + +l tk +THLi+      ++ + +k + A+ +gi++Vs  W
  CCD24570.1 424 ISYTGFFGLQRLYIHNLILLLNANPMPQLsTKLTTHLISkfdpieTHDNNKKLKIATARGIKIVSSFW 491
                 899**************************999*******999999999****************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1645  (0.0917508); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.24s 00:00:01.08 Elapsed: 00:00:00.43
# Mc/sec: 9036.40
//
Query:       CCD24571.1  [L=399]
Description: hypothetical protein NDAI_0D02570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-09   37.8   0.0    9.1e-09   35.9   0.0    2.0  2  Globin         Globin
    1.4e-08   35.0   0.0    2.3e-08   34.3   0.0    1.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    1.7e-07   31.8   0.0    5.6e-07   30.2   0.0    1.9  1  NAD_binding_1  Oxidoreductase NAD-binding domain
  ------ inclusion threshold ------
      0.068   13.3   0.1       0.26   11.4   0.1    1.9  2  NAD_binding_6  Ferric reductase NAD binding domain
      0.095   12.6   0.1        0.3   11.0   0.1    1.8  1  Protoglobin    Protoglobin


Domain annotation for each model (and alignments):
>> Globin  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   2.5e-12   9.1e-09       2     109 ..       7     102 ..       6     103 .. 0.90
   2 ?   -1.4   0.0      0.93   3.3e+03      22      56 ..     117     152 ..     105     161 .. 0.77

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2.5e-12
                 HHHHHHHHHHHHTHHHHHHHHHHHHHHHHSGGGGGGSTTTTTTT-HHHHCTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCSTT--HH CS
      Globin   2 kalvkaswekvkanaeelgaeilkrlFkaypdtkklFkkfgdlssaedlksspkfkahakkvlaalgeavknldndealkaalkklaarHaergkvdpa 100
                 ++ vka+++ ++++ + +++ ++k+++ ++ ++ ++F+++ +       k+ ++  a a++vlaa  +    +d+ + l +++k+++++H++ + ++p+
  CCD24571.1   7 RTIVKATVPVLEQQGAVITRCFYKNMLGEHTELLNIFNRV-N-Q-----KKGAQPTALATTVLAAAKN----IDDLTPLLEHVKQIGHKHRALQ-IKPE 93 
                 678***********************************99.4.4.....79************98655....444458****************.**** PP

                 HHHHHHHHH CS
      Globin 101 nFklfgeal 109
                 +++++ge l
  CCD24571.1  94 HYPIVGEYL 102
                 ****99876 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.93
                 HHHHHHHHHSGGGGGGSTTT.TTTT-HHHHCTSHHH CS
      Globin  22 eilkrlFkaypdtkklFkkf.gdlssaedlksspkf 56 
                 ei +++ +ay ++ ++F ++ +++++ +++k+ ++f
  CCD24571.1 117 EIINAWGEAYGEIANVFISVeKEMYDEAAWKGWEEF 152
                 555566678899999999999999988888887776 PP

>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   6.5e-12   2.3e-08       2      97 ..     152     261 ..     151     263 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 6.5e-12
                    EEEEEEEECCTTEEEEEEE....ESTTTS-----TT-EEEEEEC....ETTCCEEEEEE.BSSTTECCEEEEEEE--......TT-HHHHHH.HCS CS
  FAD_binding_6   2 lkltekeevsedtrifrfk....lpsekqklglpvGqhvflrlk....ikgeaviRsYtpissenekGelellvkvy......pgGkmsqaL.del 82 
                    +++++ke v +d+  f+++    ++ + ++l +++Gq++ ++++     +  + +R Y+ i s +++G l++ vk        p G +s+ L + +
     CCD24571.1 152 FTVVDKELVADDIYQFTVQpvdsTKVNLKNLPIVAGQYITVNTHpirqDNHYDALRHYS-ICSISDQGGLKFGVKLEssqnnnPVGLVSEFLhKDV 246
                    68999************963222344456778899*******9984323355789****.77788999********99***999********666* PP

                    -TT-EEEEEEEE-SE CS
  FAD_binding_6  83 kigdtleikGPlGkf 97 
                    k+gd+l++++P G f
     CCD24571.1 247 KVGDKLKLSAPAGDF 261
                    *************98 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.6e-10   5.6e-07       1     106 [.     277     370 ..     277     373 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.6e-10
                    EEEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEE CS
  NAD_binding_1   1 miagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvy 96 
                    ++++G+G++P++s+l++ +   +++++++++  +  + +l++++++++l +k+p++ k v     + ++       +++++l+  ++   + ++vy
     CCD24571.1 277 LLSAGVGVTPILSMLEKQISV-NPERPIYWIQSAYDDGHLAFKKQVNALLEKAPNHKKSVVL--TNTSK------PIDAEFLKANVP---AHADVY 360
                    689*****************7.99*******************************4333333..33333......488888888888...8899** PP

                    EECSHHHHHH CS
  NAD_binding_1  97 vCGppgMika 106
                    +CG  g+++ 
     CCD24571.1 361 LCGSLGFMQT 370
                    ***9999886 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   7.3e-05      0.26       4      25 ..     275     296 ..     274     322 .. 0.88
   2 ?   -2.1   0.0         1   3.6e+03     132     150 ..     352     370 ..     319     372 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 7.3e-05
                    xxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   4 vllvagGiGitpfisilkdllk 25 
                    ++l+++G+G+tp++s+l + + 
     CCD24571.1 275 LVLLSAGVGVTPILSMLEKQIS 296
                    79***************98765 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1
                    xxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 132 hknssvgvfvCGppklvke 150
                    +  +   v+ CG+ +++++
     CCD24571.1 352 NVPAHADVYLCGSLGFMQT 370
                    4455667899999888776 PP

>> Protoglobin  Protoglobin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   8.4e-05       0.3      14     119 ..       2     110 ..       1     122 [. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.4e-05
                  -SHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC.TSHHHHHHHCH.....HCHHHHHHHHHHHHHHHCCCSSCCHHHHHHHHHHHHHHCHCT--HHHHH CS
  Protoglobin  14 lteedlaaLralapliealipavvdafYekll.sfpetarifet.....ssqierlkdflksyllklfsgpfdsayveyldkvGkmhtrlgleprwyi 105
                  l+e++  +++a  p++e++   +++ fY+++l ++ e+  if++      +q   l  +  +  +++   +     +e ++++G+ h  l+++p +y 
   CCD24571.1   2 LSEQTRTIVKATVPVLEQQGAVITRCFYKNMLgEHTELLNIFNRvnqkkGAQPTALATTVLAAAKNI---DDLTPLLEHVKQIGHKHRALQIKPEHYP 96 
                  67788889999999**************998725699*****9955333222222222222222222...4667799********************8 PP

                  HCHHHHHHHHHHHH CS
  Protoglobin 106 aalglvqevlleal 119
                     +++++ + e l
   CCD24571.1  97 IVGEYLLKAIKEVL 110
                  87777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2703.72
//
Query:       CCD24572.1  [L=228]
Description: hypothetical protein NDAI_0D02580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-29  101.7   0.0    3.9e-29  101.2   0.0    1.2  1  ApoO      Apolipoprotein O


Domain annotation for each model (and alignments):
>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.2   0.0   2.2e-33   3.9e-29       2     129 ..      55     178 ..      54     179 .. 0.96

  Alignments for each domain:
  == domain 1  score: 101.2 bits;  conditional E-value: 2.2e-33
        ApoO   2 lysvrtpseeptdrLeegvrslRkslepytsavqdelnkvkskvetaeqsvtdtiasLkepp.edllPrlgyilvagLaGsilarrrsilkRvlyPlal 99 
                 ++s+r+p+     +L  ++rs R  l   +++++ ++n+++s++ ++eq++t+ti+ L+  p e+llP+l y +va ++Gsil+ +r++++R ++P++l
  CCD24572.1  55 GISIRNPN-----YLNDYIRSQRTKLAGFVEKTNGKINDATSRYIDKEQNITTTIKDLHTNPeEKLLPGLSYTAVAFMTGSILVSKRNFMLRYTVPMVL 148
                 67888888.....**********************************************9999************************************ PP

        ApoO 100 gglaaslfyPqtakntgdllykyeqekvpa 129
                 g+ ++s+++P t++n++ l y++e++++p 
  CCD24572.1 149 GISCFSIVMPCTFNNVKHLTYNLENKYMPN 178
                 *************************98885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1826.38
//
Query:       CCD24573.1  [L=781]
Description: hypothetical protein NDAI_0D02590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.069   13.1   0.1       0.17   11.9   0.1    1.7  1  Taeniidae_ag  Taeniidae antigen


Domain annotation for each model (and alignments):
>> Taeniidae_ag  Taeniidae antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   9.4e-06      0.17      39      63 ..     423     447 ..     418     448 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.4e-06
  Taeniidae_ag  39 ltaicqklrkKvreaLkeYvkkLvn 63 
                   ++ai   +rkK re L  Yvk+Lvn
    CCD24573.1 423 IEAIYEEARKKCREILDYYVKRLVN 447
                   6789999****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1527  (0.0851693); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 5081.59
//
Query:       CCD24574.1  [L=1167]
Description: hypothetical protein NDAI_0D02600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-34  115.7   7.8    1.3e-06   28.2   0.7    6.5  6  Kelch_5   Kelch motif
    2.7e-31  107.3  13.5    5.3e-05   23.1   0.3    7.1  7  Kelch_4   Galactose oxidase, central domain
    2.5e-29  100.9   2.5    6.1e-05   23.2   0.0    6.6  6  Kelch_3   Galactose oxidase, central domain
    6.1e-28   96.2   9.0    7.5e-05   22.9   0.0    6.7  6  Kelch_6   Kelch motif
      2e-21   75.3   4.5      9e-07   28.4   0.1    6.0  6  Kelch_1   Kelch motif
    1.9e-15   56.1   7.8      0.014   15.3   0.1    6.8  6  Kelch_2   Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.7   4.5e-10   1.3e-06       2      38 ..     169     206 ..     168     210 .. 0.87
   2 !   13.5   0.1   1.7e-05     0.052       1      41 [.     227     270 ..     227     271 .. 0.89
   3 !   21.8   0.1   4.5e-08   0.00013       2      42 .]     283     326 ..     283     326 .. 0.88
   4 !   19.3   0.0   2.7e-07    0.0008       1      38 [.     342     377 ..     342     380 .. 0.94
   5 !   21.4   0.0   5.9e-08   0.00018       1      41 [.     398     437 ..     398     438 .. 0.96
   6 !    9.7   0.0   0.00027      0.81       1      22 [.     450     472 ..     450     478 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 4.5e-10
     Kelch_5   2 PppRaghcav.tvs..ekiYvyGGkvgrdgsvsddvyvLd 38 
                 P pR++h a  +vs  +kiYv+GG    d+sv++d ++L+
  CCD24574.1 169 PFPRYRHVASsYVSddGKIYVIGGLH--DQSVYGDTWILS 206
                 99*******8556445**********..9**********8 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.7e-05
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvg...rdgsvsddvyvLdlps 41 
                 +PppR gh+a  +++   ++GG ++    dgs  dd+y ++++s
  CCD24574.1 227 TPPPRVGHAATLCGNAFVIFGGDTHkvnKDGSMDDDIYLFNINS 270
                 6*************99999999999*87777778******9987 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 4.5e-08
     Kelch_5   2 PppRaghcavtv..s...ekiYvyGGkvgrdgsvsddvyvLdlpsf 42 
                 P +R+gh + +   s   +k+Y++GG    d+ +++d+ v+dl sf
  CCD24574.1 283 PLGRYGHKISIIatSqmkTKLYLFGGQF--DDTYFNDLVVFDLSSF 326
                 899******97635356699********..9*************98 PP

  == domain 4  score: 19.3 bits;  conditional E-value: 2.7e-07
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLd 38 
                 iPpp+++h ++ +++k++v+GG +   +++++ v+ +d
  CCD24574.1 342 IPPPLTNHTMCSYDHKLWVFGGDTL--QGLTNQVFMYD 377
                 7***********************7..99999999998 PP

  == domain 5  score: 21.4 bits;  conditional E-value: 5.9e-08
     Kelch_5   1 iPppRaghcavtvsekiYvyGGkvgrdgsvsddvyvLdlps 41 
                 iPpp+  h+av +++ + v+GGk+ +++++ +dvy L+l++
  CCD24574.1 398 IPPPIQEHAAVLYKDLMCVIGGKD-ESDNYLNDVYFLNLKT 437
                 7***********************.89***********987 PP

  == domain 6  score: 9.7 bits;  conditional E-value: 0.00027
     Kelch_5   1 iPppRaghcavtv.sekiYvyGG 22 
                 +P++R+gh++  + ++ki+++GG
  CCD24574.1 450 VPQGRSGHSVTLLkNDKILIMGG 472
                 6***********966*******9 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   6.8e-08    0.0002       1      39 [.     171     210 ..     171     227 .. 0.83
   2 !   17.8   0.0     8e-07    0.0024       1      42 [.     230     274 ..     230     283 .. 0.78
   3 !   20.0   0.1   1.7e-07   0.00051      13      38 ..     301     325 ..     286     326 .. 0.89
   4 !   23.1   0.3   1.8e-08   5.3e-05       4      44 ..     348     386 ..     347     400 .. 0.88
   5 !   20.8   0.0   9.4e-08   0.00028       1      41 [.     401     440 ..     401     451 .. 0.85
   6 !    7.0   0.0    0.0019       5.7       1      23 [.     453     475 ..     453     489 .. 0.84
   7 ?   -1.8   0.0       1.1   3.2e+03       1      14 [.     636     649 ..     636     650 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 6.8e-08
     Kelch_4   1 pRaghsatsi..pdgtiylfGGrgedgtllndlylldlstn 39 
                 pR  h+a s   +dg+iy++GG  ++ ++++d+++l+ ++n
  CCD24574.1 171 PRYRHVASSYvsDDGKIYVIGGLHDQ-SVYGDTWILSYENN 210
                 67777755555889************.7********98777 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 8e-07
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedg...tllndl.ylldlstntWr 42 
                 pR+gh+at ++ + +++fGG + +    ++++d  yl+++ + +W+
  CCD24574.1 230 PRVGHAATLCG-NAFVIFGGDTHKVnkdGSMDDDiYLFNINSYKWT 274
                 9*********7.78888***988745776666666**********4 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 1.7e-07
     Kelch_4  13 gtiylfGGrgedgtllndlylldlst 38 
                  ++ylfGG+ +d t +ndl ++dls+
  CCD24574.1 301 TKLYLFGGQFDD-TYFNDLVVFDLSS 325
                 689********9.9**********96 PP

  == domain 4  score: 23.1 bits;  conditional E-value: 1.8e-08
     Kelch_4   4 ghsatsipdgtiylfGGrgedgtllndlylldlstntWrrl 44 
                 +h+++s  d ++++fGG + +g l n ++ +d  +n W  +
  CCD24574.1 348 NHTMCSY-DHKLWVFGGDTLQG-LTNQVFMYDPVDNDWCVV 386
                 89****9.7************6.***************987 PP

  == domain 5  score: 20.8 bits;  conditional E-value: 9.4e-08
     Kelch_4   1 pRaghsatsipdgtiylfGGrgedgtllndlylldlstntW 41 
                 p + h+a+   d  ++ +GG  e +  lnd+y+l+l+t +W
  CCD24574.1 401 PIQEHAAVLYKDLMCV-IGGKDESDNYLNDVYFLNLKTLKW 440
                 5678899988655555.************************ PP

  == domain 6  score: 7.0 bits;  conditional E-value: 0.0019
     Kelch_4   1 pRaghsatsipdgtiylfGGrge 23 
                 +R ghs+t + +++i + GG   
  CCD24574.1 453 GRSGHSVTLLKNDKILIMGGDKF 475
                 599*****************655 PP

  == domain 7  score: -1.8 bits;  conditional E-value: 1.1
     Kelch_4   1 pRaghsatsipdgt 14 
                 pR++hs+ s+ + t
  CCD24574.1 636 PRISHSSSSDLNAT 649
                 9******9986666 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   2.7e-08   8.1e-05       2      48 ..     185     238 ..     184     239 .. 0.80
   2 !   19.8   0.0   2.4e-07   0.00071       1      48 [.     240     293 ..     240     294 .. 0.85
   3 !   17.4   0.0   1.4e-06    0.0041       3      48 ..     302     353 ..     301     354 .. 0.76
   4 !   11.4   0.0    0.0001       0.3       2      30 ..     356     388 ..     355     409 .. 0.71
   5 !   23.2   0.0   2.1e-08   6.1e-05       2      48 ..     412     461 ..     411     462 .. 0.92
   6 ?   -2.3   0.0         2   6.1e+03      39      48 ..     632     644 ..     622     645 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.7e-08
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtn......tWaei...aslppaRaghaata 48 
                 +++y++GGl    q +++d++ ++ ++n      t +++    ++pp+R+ghaat+
  CCD24574.1 185 GKIYVIGGLH--DQSVYGDTWILSYENNglsttiTSKTVdisENTPPPRVGHAATL 238
                 68********..59*******998888877663433333777999*********95 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 2.4e-07
     Kelch_3   1 gdrlyifGGlgd.dgqdrl..ndvyvydldtntWa...eiaslppaRaghaata 48 
                 g+ ++ifGG +   + d++   d y++++++ +W+    +++ p +R+gh ++ 
  CCD24574.1 240 GNAFVIFGGDTHkVNKDGSmdDDIYLFNINSYKWTipkPVGQRPLGRYGHKISI 293
                 799********9966666666**************7655599********9985 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 1.4e-06
     Kelch_3   3 rlyifGGlgddgqdrlndvyvydl.......dtntWaeias.lppaRaghaata 48 
                 +ly+fGG  d   ++ nd+ v+dl       + +++ +  s  pp+ ++h++++
  CCD24574.1 302 KLYLFGGQFD--DTYFNDLVVFDLssfrrpdSHWEFIRPKSfIPPPLTNHTMCS 353
                 59*******6..6***********5444443333555666645**********7 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.0001
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydl.dtn.....t 30 
                 ++l++fGG +   q  +n+v++yd+ d++     t
  CCD24574.1 356 HKLWVFGGDT--LQGLTNQVFMYDPvDNDwcvveT 388
                 79********..69***********5444544444 PP

  == domain 5  score: 23.2 bits;  conditional E-value: 2.1e-08
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtntWaei....aslppaRaghaata 48 
                 d + ++GG++  + ++lndvy ++l t +W ++       p++R+gh++t+
  CCD24574.1 412 DLMCVIGGKD-ESDNYLNDVYFLNLKTLKWFKLpfykEGVPQGRSGHSVTL 461
                 789*******.799*******************9996668********995 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 2
     Kelch_3  39 p...aRaghaata 48 
                 p   +R +h++++
  CCD24574.1 632 PnekPRISHSSSS 644
                 24679*****986 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.4   7.9e-07    0.0023       3      38 ..     175     210 ..     173     219 .. 0.80
   2 !   12.6   0.1   4.4e-05      0.13       1      41 [.     230     274 ..     230     275 .. 0.90
   3 !   15.1   0.0   7.2e-06     0.022      12      42 ..     301     335 ..     289     343 .. 0.81
   4 !   22.4   0.1   3.5e-08    0.0001       3      40 ..     347     383 ..     344     389 .. 0.93
   5 !   22.9   0.0   2.5e-08   7.5e-05       5      47 ..     405     447 ..     403     451 .. 0.93
   6 ?    3.9   0.0     0.023        69       2      21 ..     454     474 ..     454     488 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 7.9e-07
     Kelch_6   3 a.ghslvsvggkiYifGGytdsspylnkvwvydpetk 38 
                 + + s vs +gkiY++GG+ d  + + + w+++ e++
  CCD24574.1 175 HvASSYVSDDGKIYVIGGLHD-QSVYGDTWILSYENN 210
                 437788**************9.588888888886666 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.4e-05
     Kelch_6   1 praghslvsvggkiYifGGytds....spylnkvwvydpetksWe 41 
                 pr+gh+++++g+ ++ifGG t+     ++  ++++++++ + +W+
  CCD24574.1 230 PRVGHAATLCGNAFVIFGGDTHKvnkdGSMDDDIYLFNINSYKWT 274
                 699*******************99999444499999999999996 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 7.2e-06
     Kelch_6  12 gkiYifGGytdsspylnkvwvydpetks.....Weq 42 
                  k+Y+fGG+ d ++y+n++ v+d+++ +     We+
  CCD24574.1 301 TKLYLFGGQFD-DTYFNDLVVFDLSSFRrpdshWEF 335
                 68*********.9**********9985545555555 PP

  == domain 4  score: 22.4 bits;  conditional E-value: 3.5e-08
     Kelch_6   3 aghslvsvggkiYifGGytdsspylnkvwvydpetksW 40 
                 + h+++s++ k+++fGG t     +n+v+ ydp ++ W
  CCD24574.1 347 TNHTMCSYDHKLWVFGGDTL-QGLTNQVFMYDPVDNDW 383
                 58******************.5999***********99 PP

  == domain 5  score: 22.9 bits;  conditional E-value: 2.5e-08
     Kelch_6   5 hslvsvggkiYifGGytdsspylnkvwvydpetksWeqlpplp 47 
                 h++v++ +  +++GG + s++yln+v++++++t +W +lp ++
  CCD24574.1 405 HAAVLYKDLMCVIGGKDESDNYLNDVYFLNLKTLKWFKLPFYK 447
                 889**********************************999776 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.023
     Kelch_6   2 raghslvs.vggkiYifGGyt 21 
                 r ghs+++  ++ki i+GG +
  CCD24574.1 454 RSGHSVTLlKNDKILIMGGDK 474
                 679999885888*******86 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.7   2.2e-05     0.067       8      37 ..     181     210 ..     176     210 .. 0.85
   2 !    7.3   0.0    0.0012       3.5       1      40 [.     230     274 ..     230     279 .. 0.93
   3 !   10.9   0.0     9e-05      0.27      10      35 ..     299     324 ..     295     340 .. 0.81
   4 !   28.4   0.1     3e-10     9e-07       2      42 ..     346     386 ..     345     389 .. 0.94
   5 !   11.1   0.0   7.7e-05      0.23       5      43 ..     405     444 ..     404     444 .. 0.87
   6 ?   -1.1   0.0       0.5   1.5e+03      11      22 ..     464     475 ..     454     485 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.2e-05
                 EEETTEEEEEEEBCSSSBEEEEEEEETTTT CS
     Kelch_1   8 vvvggkiYviGGsdggnalssvevyDpetn 37 
                 v+ +gkiYviGG  +++   + ++++ e+n
  CCD24574.1 181 VSDDGKIYVIGGLHDQSVYGDTWILSYENN 210
                 899**********99998888888888776 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0012
                 BBBSEEEEEETTEEEEEEEBCS.....SSBEEEEEEEETTTTEEE CS
     Kelch_1   1 aragagavvvggkiYviGGsdg.....gnalssvevyDpetntWr 40 
                 +r g++a+ +g+   ++GG  +     g+  ++++ ++  + +W+
  CCD24574.1 230 PRVGHAATLCGNAFVIFGGDTHkvnkdGSMDDDIYLFNINSYKWT 274
                 79*********************9999999999999999999998 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 9e-05
                 ETTEEEEEEEBCSSSBEEEEEEEETT CS
     Kelch_1  10 vggkiYviGGsdggnalssvevyDpe 35 
                 + +k+Y +GG+++ ++ +++ v+D+ 
  CCD24574.1 299 MKTKLYLFGGQFDDTYFNDLVVFDLS 324
                 678*********************98 PP

  == domain 4  score: 28.4 bits;  conditional E-value: 3e-10
                 BBSEEEEEETTEEEEEEEBCSSSBEEEEEEEETTTTEEEEE CS
     Kelch_1   2 ragagavvvggkiYviGGsdggnalssvevyDpetntWrel 42 
                  +++++++ ++k+ v+GG   +  ++ v++yDp+ n W+ +
  CCD24574.1 346 LTNHTMCSYDHKLWVFGGDTLQGLTNQVFMYDPVDNDWCVV 386
                 689***********************************987 PP

  == domain 5  score: 11.1 bits;  conditional E-value: 7.7e-05
                 EEEEEETTEEEEEEEBCS.SSBEEEEEEEETTTTEEEEEC CS
     Kelch_1   5 agavvvggkiYviGGsdg.gnalssvevyDpetntWrelp 43 
                 ++av   + + viGG d+  n+l++v+ ++++t +W +lp
  CCD24574.1 405 HAAVLYKDLMCVIGGKDEsDNYLNDVYFLNLKTLKWFKLP 444
                 566777777779************************8776 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 0.5
                 TTEEEEEEEBCS CS
     Kelch_1  11 ggkiYviGGsdg 22 
                 ++ki ++GG  +
  CCD24574.1 464 NDKILIMGGDKF 475
                 789******766 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   4.8e-06     0.014       1      37 [.     171     223 ..     171     227 .. 0.76
   2 !    9.2   0.1    0.0004       1.2       1      48 [.     230     279 ..     230     280 .. 0.83
   3 !    9.0   0.0   0.00049       1.5       2      38 ..     286     324 ..     285     325 .. 0.86
   4 !    7.6   0.1    0.0013       3.9       2      43 ..     346     384 ..     345     387 .. 0.80
   5 !    9.2   0.0    0.0004       1.2       5      46 ..     405     444 ..     402     444 .. 0.93
   6 ?    4.1   0.0     0.017        51       1      19 [.     453     472 ..     453     490 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.8e-06
     Kelch_2   1 rrgghsssvp...ggkiyvvGGa.............htdnpnlsssdvhvldl 37 
                 +r++h++s+    +gkiyv+GG              ++ n+++ +++  + d 
  CCD24574.1 171 PRYRHVASSYvsdDGKIYVIGGLhdqsvygdtwilsYENNGLSTTITSKTVDI 223
                 79999999777************888887777777666666666666655555 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0004
     Kelch_2   1 rrgghsssvpggkiyvvGGa.htdnpnls.ssdvhvldlekhvWeevtpl 48 
                 +r+gh+++ +g+  +++GG  h  n++ s  +d++ ++ ++++W+  +p+
  CCD24574.1 230 PRVGHAATLCGNAFVIFGGDtHKVNKDGSmDDDIYLFNINSYKWTIPKPV 279
                 79*****************98666666552678999********988776 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00049
     Kelch_2   2 rgghsssvp.....ggkiyvvGGahtdnpnlsssdvhvldle 38 
                 r+gh +s +       k+y++GG     ++ +++d+ v+dl+
  CCD24574.1 286 RYGHKISIIatsqmKTKLYLFGGQ---FDDTYFNDLVVFDLS 324
                 7777777777777799********...*************86 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0013
     Kelch_2   2 rgghsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWe 43 
                 +  h++++ ++k+ v+GG         ++ v  +d+ ++ W 
  CCD24574.1 346 LTNHTMCSYDHKLWVFGGD---TLQGLTNQVFMYDPVDNDWC 384
                 567***************9...66666666666888888886 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.0004
     Kelch_2   5 hsssvpggkiyvvGGahtdnpnlsssdvhvldlekhvWeevt 46 
                 h+++   + ++v+GG   d+++ + +dv++l+l++ +W +++
  CCD24574.1 405 HAAVLYKDLMCVIGGK--DESDNYLNDVYFLNLKTLKWFKLP 444
                 8999999999******..********************9986 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.017
     Kelch_2   1 rrgghsssvp.ggkiyvvGG 19 
                 +r+ghs++ + ++ki+++GG
  CCD24574.1 453 GRSGHSVTLLkNDKILIMGG 472
                 599*****999********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2127  (0.118635); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.12u 0.34s 00:00:01.46 Elapsed: 00:00:00.59
# Mc/sec: 5968.52
//
Query:       CCD24575.1  [L=276]
Description: hypothetical protein NDAI_0D02610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.51   10.3   4.7       0.88    9.6   4.7    1.4  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr
        3.3    6.5   5.1        3.9    6.3   5.1    1.1  1  LMBR1           LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.7   9.9e-05      0.88      96     209 ..      60     238 ..      46     253 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 9.9e-05
                     HHHTTHHHHHHC--------------.........................................................------------ CS
  Neur_chan_memb  96 rkvfldklprllfmkrpsevkdnekkl........................................................ssgasseaeeli 134
                      +vfl++ p+ll ++   ++ +n+ +l                                                        ss+ + ++ + +
      CCD24575.1  60 DQVFLNENPQLLQFSPY-SNGSNHMSLpvhqnnrtafngtsnnnacnssndagsdwvpefssmqindplefsqeykklysnyeSSKIPGKSTSNS 153
                     56677777777766533.44444444446666666666666666666666666666666666666666666555555565555444444666666 PP

                     --------------------------SS---TTGGG--...............-----TTTTTHHHHHHHHHHHHHHHHHHHHHH CS
  Neur_chan_memb 135 lskskseskkaklseeqgsekastckckckegeeaspstqlsk..........eelspelkkavegvkyiadhlraededksvke 209
                      ++++++++  ++s+ ++++ +s ++++++ +++++++++ ++          +++++el++  e    + d+ r    d++ +e
      CCD24575.1 154 INNQSAQFQLRNKSQLHPQMGSSSQQYNNNMQQQQHQQQHSNQnidsyfdlefKSVEEELSRRNEDDTLMTDQERTPMFDEEQSE 238
                     6666667888888888888888888888877776665555544677666666666666666666666555555555555544444 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.1   0.00043       3.9     227     306 ..     130     233 ..      82     271 .. 0.66

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00043
       LMBR1 227 lkevkklrksisesdplrkyleeilkkvPeeiaeklks....nenkteeslaklekqlikalqkrertekqwkrllekalele................ 305
                  +e kkl++++++s+   k  ++ +++  +       +    n+++ + ++ ++ +q  +++q+++ ++++ +++++ +++le                
  CCD24575.1 130 SQEYKKLYSNYESSKIPGKSTSNSINNQSA-------QfqlrNKSQLHPQMGSSSQQYNNNMQQQQHQQQHSNQNIDSYFDLEfksveeelsrrneddt 221
                 445555555555555322333333333333.......244445555666999999999*********************99987666655555555544 PP

       LMBR1 306 ...........d 306
                            d
  CCD24575.1 222 lmtdqertpmfD 233
                 444444443330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2013  (0.112276); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 1943.52
//
Query:       CCD24576.1  [L=987]
Description: hypothetical protein NDAI_0D02620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.4e-183  606.1   3.1   6.2e-105  350.6   0.5    2.1  2  PFK       Phosphofructokinase
    1.3e-27   96.1   0.3    2.6e-27   95.1   0.3    1.6  1  Pfk_N     Phosphofructokinase N-terminal domain yeast
  ------ inclusion threshold ------
      0.023   14.3   0.1      0.082   12.5   0.1    2.0  1  DAGK_cat  Diacylglycerol kinase catalytic domain
       0.45   10.3   1.8        1.1    9.1   0.4    2.2  2  UVR       UvrB/uvrC motif


Domain annotation for each model (and alignments):
>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.6   0.5  1.4e-108  6.2e-105       1     284 []     206     513 ..     206     513 .. 0.94
   2 !  256.1   0.1   8.5e-80   3.8e-76       1     284 []     594     884 ..     594     884 .. 0.91

  Alignments for each domain:
  == domain 1  score: 350.6 bits;  conditional E-value: 1.4e-108
                 EEEEEEESS--TTHHHHHHHHHHHHHHTT-EEEEETTHHHHHHTT..-EEEE-SGGGTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT--EEEE CS
         PFK   1 riailtsGGdapGmNaairavvrtaikkglevygireGfeGliee..eiekltledvsgilsegGtiLgsaRskefkeregrkkaaenlkklgidaLvv 97 
                 +ia++tsGGd+pGmNaa+ravvrt+i+ g++v++++eG+eGl+++   ++++ +edv+g+lsegGt++g+aRs efk+regrk+aa nl ++gidaLvv
  CCD24576.1 206 KIAVMTSGGDSPGMNAAVRAVVRTGIHFGCDVFAVYEGYEGLLRGgkYLRQMAWEDVRGWLSEGGTLIGTARSMEFKKREGRKRAAGNLIAEGIDALVV 304
                 7******************************************99877779************************************************ PP

                 EESHHHHHHHHHHHHT..T.....................--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHHT-EEEEEES-TT-TH CS
         PFK  98 iGGdgslkganklseerkgllee.................lkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstakshkrvfvvEvmGrncGw 179
                 +GGdgsl+ga+ +++e+++l+e+                 lkivg++++idND+ gtd tiG+++Al++i+e++d +  taksh+r+fv+EvmGr+cGw
  CCD24576.1 305 CGGDGSLTGADLFRHEWPSLVEDlvkegtfteaqvapyknLKIVGLVGSIDNDMSGTDSTIGAYSALERICEMVDYIDATAKSHSRAFVIEVMGRHCGW 403
                 *******************9999**************************************************************************** PP

                 HHHHHHHHHT-SEEE-TTS---HH....HHHHHHHHHHT.T-S-EEEEEESSS..S-.....HHHHHHHHHHHHSS-EEEEE-GGGGG-S---HHHHHH CS
         PFK 180 lAlmaglaggadvilipEepfdie....eliekikklrkkgkkksiivvaEgakdkeg..iiaeelakeieektgievrvtvlGhlqrGgspsafDril 272
                 lAlmag+a+gad+i+ipE+ +       el + ++++r+kg++++ i+vaEga d++    +a+++++ + e +g++++vt+lGh+qrGg++ a Dr+l
  CCD24576.1 404 LALMAGIATGADYIFIPERAVPHGkwqeELKQVCQRHRAKGRRNNTIIVAEGALDDQLnpVTADNVKDALIE-LGLDTKVTILGHVQRGGTAVAHDRWL 501
                 *******************99877333344444455557799999*********64447899********77.7************************* PP

                 HHHHHHHHHHHH CS
         PFK 273 atrlGikavell 284
                 at+ G+ av+++
  CCD24576.1 502 ATLQGVDAVKAI 513
                 *********986 PP

  == domain 2  score: 256.1 bits;  conditional E-value: 8.5e-80
                 EEEEEEESS--TTHHHHHHHHHHHHHHTT-EEEEETTHHHHHHTT.-EEEE-SGGGTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT--EEEEE CS
         PFK   1 riailtsGGdapGmNaairavvrtaikkglevygireGfeGliee.eiekltledvsgilsegGtiLgsaRskefkeregrkkaaenlkklgidaLvvi 98 
                 +i+i+++G++++++Naa+ra++ +++++g+++++i +Gf+Gli+  e+++l++ dv+++++ gG+ +g++Rs      e++ ++a  ++k ++d+L+++
  CCD24576.1 594 NIGIVHVGAPSAALNAATRAATLYCLSHGHKPLAIMNGFSGLIQTgEVKELEWIDVENWHNLGGSEIGTNRSVAA---EDLGTIAYYFQKIKLDGLIIL 689
                 59*****************************************999999***********************996...45******************* PP

                 ESHHHHHHHHHHHHT..T.....--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEES-TT-THHHHHHHHHHT-SEEE- CS
         PFK  99 GGdgslkganklseerkgllee.lkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstaksh.krvfvvEvmGrncGwlAlmaglaggadvili 195
                 GG++ ++ +++l++ r++++ + +++ +iP+Ti+N++pgt+y++G+dT+ln +v++ d++k++a+++ krvfvvEv+G+++G++A  +gl +ga  +++
  CCD24576.1 690 GGFEGFRSLKQLRDGRSQHPIFnIPMTLIPSTISNNVPGTEYSLGVDTCLNALVNYTDDIKQSASATrKRVFVVEVQGGHSGYIASFTGLITGAVSVYT 788
                 *************9998866547**************************************************************************** PP

                 TTS---HHHHHHHHHHHH.......T.T-S-EEEEEESSS..S-...HHHHHHHH.HHHHSS.-EEEEE-GGGGG-S---HHHHHHHHHHHHHHHHHH CS
         PFK 196 pEepfdieeliekikklr.......kkgkkksiivvaEgakdkegiiaeelakei.eektgi.evrvtvlGhlqrGgspsafDrilatrlGikavell 284
                 pE+++d+ ++ e+++ l+        ++++++i +++E+a++   ++++ +a+ i e+++g   vr++++Gh q+Gg ps+ Dr++++r+++k+++++
  CCD24576.1 789 PEDKIDLSSIREDLTLLQenfrhdkGENRNGKILIRNEEASS--VYSTQLIADIIsESSKGSfGVRTAIPGHAQQGGVPSSKDRVVSSRYAVKCIKFI 884
                 ********888887777765544212234445********86..4679999999954444435*******************************9975 PP

>> Pfk_N  Phosphofructokinase N-terminal domain yeast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.3   5.9e-31   2.6e-27       2      97 ..       9     100 ..       8     101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.1 bits;  conditional E-value: 5.9e-31
       Pfk_N   2 gvsftslvtnkeekyeelikfYkklGfkvvksyskeantksel..kGvstdslkeiWlesFplsevdsnGkviPlqesseyksdkleklsegvvlkiR 97 
                 gv+f s+vt+++  ++e+i+fY+klGf+ +k ++k +n++++l   G+s+ds+ke+Wle+F+lse+d +G+++P+qe+++      +++s+g +lk+R
  CCD24576.1   9 GVAFRSVVTTDDTLFQETIQFYHKLGFSTIKDFNKFKNSDNHLlsVGTSQDSIKEVWLEAFKLSEIDGQGFRVPQQEAAN------KNQSQGALLKVR 100
                 79*************************************9999889*********************************9......899*******99 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.8e-05     0.082      20      68 ..     260     311 ..     249     314 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
                 HHCHHHHHHCTC...EEEEEE--STTHHHHHHHHHHHCC-SEEEEEESHHHH CS
    DAGK_cat  20 rkvrelleeagv...elelieteepgdakelakeakeegvdlivvaGGDGtv 68 
                 + vr  l+e g    +++ +e ++++  k+ a ++ +eg+d++vv+GGDG +
  CCD24576.1 260 EDVRGWLSEGGTligTARSMEFKKREGRKRAAGNLIAEGIDALVVCGGDGSL 311
                 66666666666555567778888888899999999999************87 PP

>> UVR  UvrB/uvrC motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.4   0.00025       1.1      13      29 ..     549     565 ..     548     567 .. 0.91
   2 ?   -0.4   0.0      0.24   1.1e+03      25      35 ..     974     984 ..     973     985 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00025
         UVR  13 eAaenedFEkAAklRDq 29 
                  A+en dF+kA  lRD 
  CCD24576.1 549 AAIENKDFDKAISLRDT 565
                 59**************7 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.24
         UVR  25 klRDqinalkk 35 
                 +lRD+++al++
  CCD24576.1 974 RLRDEVAALSA 984
                 89******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 7026.17
//
Query:       CCD24577.1  [L=94]
Description: hypothetical protein NDAI_0D02630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.066   11.9  26.1      0.058   12.1  26.1    1.2  1  TT_ORF1     TT viral orf 1
        1.3    7.3  11.0        1.1    7.4  11.0    1.1  1  CDC45       CDC45-like protein
        1.9    6.9  10.5        1.8    7.0  10.5    1.1  1  Rrn6        RNA polymerase I-specific transcription-initiatio
        4.1    7.3   6.2        4.3    7.2   6.2    1.2  1  EOS1        N-glycosylation protein


Domain annotation for each model (and alignments):
>> TT_ORF1  TT viral orf 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  26.1   1.3e-05     0.058      21      63 ..      47      92 ..       5      94 .] 0.58

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.3e-05
     TT_ORF1 21 rrrvrrrrrrrrv.RR..Rrrgrrrrrrrrrrrrrrrrkrkklilk 63
                r+ +++ +r+r+  R+  R+r+r+r r+rrrrrrrrrrk +k++++
  CCD24577.1 47 RKDIQENTRKRKNeRKrkRKRKRKRNRKRRRRRRRRRRKNRKVKIR 92
                3333222222222122012222333334444444466666666665 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  11.0   0.00026       1.1     178     215 ..      52      89 ..       4      93 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00026
       CDC45 178 eeesddddersrkrrrsepsakklrrqlkkerrkyeav 215
                 e+++++++er+rkr+r++++++k+rr+++++rrk+++v
  CCD24577.1  52 ENTRKRKNERKRKRKRKRKRNRKRRRRRRRRRRKNRKV 89 
                 22244455555555555545556666666666666554 PP

>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  10.5    0.0004       1.8     744     784 ..      49      86 ..       2      93 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0004
        Rrn6 744 esaleaeeqrqrarrkrekrrrrkeklklasraeassssss 784
                 + ++++   r r++++++kr+r++++ ++++r+++ +++++
  CCD24577.1  49 DIQENT---RKRKNERKRKRKRKRKRNRKRRRRRRRRRRKN 86 
                 333332...33333333333333333223333333333322 PP

>> EOS1  N-glycosylation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.2   0.00097       4.3     112     151 ..      18      92 ..       1      94 [] 0.44

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00097
        EOS1 112 l...................................eskasslrqgksrhkrsvskseakkkrertsskrtldle 151
                 +                                   + k+++ r++k+++kr++++++++ +r+r +++r+++++
  CCD24577.1  18 KpvlpwnkadhgvamktftgynvnltgwirkdiqenTRKRKNERKRKRKRKRKRNRKRRRRRRRRRRKNRKVKIR 92 
                 144455555555556666666666666666554332222222222222223333333334455555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2242  (0.125049); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.29s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 660.24
//
Query:       CCD24578.1  [L=1188]
Description: hypothetical protein NDAI_0D02640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.5e-142  474.6  14.4   3.5e-142  474.6  14.4    2.9  3  DUF1708   Domain of unknown function (DUF1708)
     0.0076   16.1   0.3      0.025   14.4   0.0    2.1  2  RhoGAP    RhoGAP domain


Domain annotation for each model (and alignments):
>> DUF1708  Domain of unknown function (DUF1708)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.6  14.4  3.9e-146  3.5e-142       1     431 []      71     481 ..      71     481 .. 0.94
   2 ?   -4.4   1.6      0.92   8.2e+03     314     357 ..     497     561 ..     488     594 .. 0.55
   3 ?   -5.7   2.5         2   1.8e+04     312     338 ..     852     880 ..     821     930 .. 0.45

  Alignments for each domain:
  == domain 1  score: 474.6 bits;  conditional E-value: 3.9e-146
     DUF1708   1 evereevkelihliteelKargldtpfllLpFrpesdpsalrtflrnfFpkgqeegsslkgeellqelrktdiltLisvlkylWsrlpgg.vvgwdaYe 98 
                 e++re+vk +ihlit+e+K++gldt++l++pFrpe+++++l +fl+++Fp g+  g++++++++++++++t+++tL++ lky+W+rlp+  +vgw+aY 
  CCD24578.1  71 EFKRENVKGVIHLITAEIKNKGLDTEYLMIPFRPEQTNEKLLKFLNQIFPLGN--GQPVNEKKQIKIISNTNVFTLFQSLKYIWCRLPNAeIVGWKAYL 167
                 589***********************************************844..699***************************************** PP

     DUF1708  99 eFkkkEkeselprdaFltfipkslssearasivydFldLlvaiaahgkknglggrklsrlaglwAF..........ehkdk.................. 169
                 eFk +E++ ++p++aFl+++p++l+s+++asivydF+dL+v++a+++k n++++rk+s+++++wAF          +   +                  
  CCD24578.1 168 EFKYREQNLDYPQKAFLELMPQCLDSPNHASIVYDFFDLIVTLASNSKVNKMSARKISKMCAIWAFsgdmnqhfngN---Nesqnydfdyrkplssnvp 263
                 ******************************************************************77666555541...0556788888889999999 PP

     DUF1708 170 gnsfeeglkswskaadAlshLflayLrsllpekeketegsklprsLqkllqeteYPPekstllqsstlltvplvvlivdkvsptpfaLLrrakktlkfd 268
                 +ns+++gl++w++a+d ++hL+l++L+s++pe+ ++   sklprsL++ll+++eYPP+ st ++s+t+lt+plv+l++dk+s++p++LL+r++++l+f+
  CCD24578.1 264 NNSIQDGLNQWIPASDVMFHLLLSFLKSFVPEDLES---SKLPRSLKSLLFNNEYPPKGSTIYKSETILTIPLVTLKTDKFSRKPWQLLERCNNLLDFE 359
                 ********************************7776...9*********************************************************** PP

     DUF1708 269 nkdaFeareddalLkelfk...eledivkalseeskrvlkaissanqsqssstsledaswsrfkdigfeagleeeerpttpsWadflssglkssqsdkk 364
                 ++++Feared+alLk+lfk   ++e i+k++s+es+r++k +s                    k+++f+ag           W ++++  l+  + ++ 
  CCD24578.1 360 DHNSFEAREDYALLKSLFKkknNVEGISKKMSQESRRLMKLMS-------------------TKHSTFQAG-----------WTSRKC--LE--NIHE- 423
                 *******************9*9*********************...................3899*****...........**9877..33..3333. PP

     DUF1708 365 elelkeelepgelasvsrvdiddyFiwvWlsslsseetsekkalfGrslvieteikgfkkWlvveeq 431
                    lke      +++v+r+diddyFiw+Wls+ls+e+ts+kk+lfGr +++e+e++gfkkW+ ++e+
  CCD24578.1 424 ---LKE------HIEVTRIDIDDYFIWTWLSTLSYEQTSQKKQLFGRPIILEFEFDGFKKWVLFQEI 481
                 ...445......9***************************************************995 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 0.92
     DUF1708 314 qssstsledaswsrfkdigfeagleeeerpttpsWadflssgl.....................k 357
                 ++++ts + a  +  +d++ ++ +++e+r  tp+  +f ++                        
  CCD24578.1 497 KNKNTSSDTAALEPSEDLKNQPLQKPEKRNITPAYEKFQQEVSensikladspgmyhtvisketI 561
                 23355666666666677777777555788888888887663223333333333333333333221 PP

  == domain 3  score: -5.7 bits;  conditional E-value: 2
     DUF1708 312 qsqssstsledaswsrfkdigfeagl..e 338
                 +++s+ +  ++++ +++ +++++++   +
  CCD24578.1 852 NTKSNLNYEDEQQSNNNTRSNYSSNPslN 880
                 11122111122222233334444432221 PP

>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.8e-06     0.025       7     137 ..      84     226 ..      79     233 .. 0.71
   2 ?   -3.8   0.0       1.1     1e+04      88     112 ..     375     399 ..     353     402 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.8e-06
                 HHHHHHHHTTTSTTT...TTS-S-HHHH.HHHHHHHHHTGGGCT.......TTTTSCHHHHHHHHHHHHHHSSS.TTTTGGHHHHHHHHHTSSSHHHHH CS
      RhoGAP   7 cvefiekrgldtegi...yRvsgskarv.kelreafdkgkavds.......dleeedvhavaslLKrfLrelpe.pLltkelyeelieaaksedeeerl 93 
                 ++++i+++gldte +   +R +  ++++ k l + f  g+ +          +++++v ++ + LK     lp+  ++  ++y e+    +++ +  ++
  CCD24578.1  84 ITAEIKNKGLDTEYLmipFRPEQTNEKLlKFLNQIFPLGNGQPVnekkqikIISNTNVFTLFQSLKYIWCRLPNaEIVGWKAYLEFK-YREQNLDYPQK 181
                 5677777777777776667766544444033444443333332244777779999***********98888887369**********.54555555555 PP

                 HHHHHHHTTS-HHHHHHHHH.HHHHHHHHHHTHHHH---HHHHHH CS
      RhoGAP  94 ealkellekLPkenrdtLry.LlehLkrvaenskenkMtaknLai 137
                   l+ + + L  +n++ + y  +++++++a+nsk+nkM+a+ ++ 
  CCD24578.1 182 AFLELMPQCLDSPNHASIVYdFFDLIVTLASNSKVNKMSARKISK 226
                 66666667998888877666599*****************99875 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.1
                 SHHHHHHHHHHHHTTS-HHHHHHHH CS
      RhoGAP  88 deeerlealkellekLPkenrdtLr 112
                 +  +++++++ + +k+++e r++++
  CCD24578.1 375 SLFKKKNNVEGISKKMSQESRRLMK 399
                 3333445555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1429  (0.0797033); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.47
# Mc/sec: 7652.39
//
Query:       CCD24579.1  [L=446]
Description: hypothetical protein NDAI_0D02650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-60  202.4   0.3    6.6e-60  202.0   0.3    1.2  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    7.3e-28   97.1   0.1    1.4e-27   96.2   0.1    1.5  1  GTP_EFTU_D3  Elongation factor Tu C-terminal domain
    2.8e-20   72.5   2.6    4.1e-20   72.0   1.6    1.9  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    0.00011   22.2   0.0    0.00024   21.1   0.0    1.6  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0076   16.2   0.1      0.039   13.8   0.0    2.0  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.025   14.3   0.3        7.1    6.4   0.0    2.3  2  PduV-EutP    Ethanolamine utilisation - propanediol utilisati
      0.039   13.5   0.8      0.073   12.7   0.0    1.8  2  cobW         CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.0   0.3   2.6e-63   6.6e-60       1     193 [.      51     248 ..      51     249 .. 0.95

  Alignments for each domain:
  == domain 1  score: 202.0 bits;  conditional E-value: 2.6e-63
                 TCEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHH..HHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEE CS
    GTP_EFTU   1 krirnigiighvDhGKtTLtdrLlyktgaiskkgeka..eeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDga 97 
                 k+++nig+ighvDhGKtTLt ++++++++ s +g+ka   + + +D+++eEr+rgiTi++a++++e  t+k++++++D+PGH+d++k++i+g++++Dga
  CCD24579.1  51 KPHVNIGTIGHVDHGKTTLTAAITKTLSQHSAEGTKAsfLDYSSIDKAPEERARGITISTAHVEYE--TAKRHYSHVDCPGHADYIKNMITGAAQMDGA 147
                 579*****************************999997633667**********************..******************************* PP

                 EEEEETTTBSTHHHHHHHHHHHHTTTE.EEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTB..........THHHH CS
    GTP_EFTU  98 vlvvdaveGvepqteevlrlalkegvp.iivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkge..........gvktl 184
                 ++vv+a++G +pqt+e+l la+++gv+ i+vf+NK+D + + e+ e+ve+  ++l      l++yg++g+ + p+++gSal +           ++ +l
  CCD24579.1 148 IIVVAATDGQMPQTREHLLLARQVGVQhIVVFVNKVDTIdDPEMLELVEMEMREL------LNEYGFDGD-NAPIIMGSALCALegrqpeigekAILKL 239
                 ***************************************999*************......********6.***********998888888888777** PP

                 HHHHHHHSH CS
    GTP_EFTU 185 lealvellp 193
                 l+a++e++p
  CCD24579.1 240 LDAVDEYIP 248
                 *******99 PP

>> GTP_EFTU_D3  Elongation factor Tu C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.1   5.5e-31   1.4e-27       1     111 [.     346     444 ..     346     445 .. 0.96

  Alignments for each domain:
  == domain 1  score: 96.2 bits;  conditional E-value: 5.5e-31
                  --EEECCEEEEEEESSS.....SS-BSTT-EEEEESSS-EEEEEEEEEEECCSSTTSB-BSS-SSCCSTT-CEEEEEEECCEEEE--TTTHCCCCEEE CS
  GTP_EFTU_D3   1 sikphtkfeAqvyileke...rhtpitagYrpvlyirtadvtgkvveLlskldkktekvsekkpefvkpGdnvivevelikpialekgseypqlGrFa 95 
                  ++k+htk+ A++yil+ke   rh+ + ++Yrp+++irtadvt+ v+++       + +v e++++ v+pGdnv++e+el +p  +e g+      rF+
   CCD24579.1 346 TVKAHTKILASMYILSKEeggRHSGFGENYRPQMFIRTADVTA-VMKF-------PPEV-EDHSKQVMPGDNVEMECELVHPTPVEVGQ------RFN 428
                  589****************************************.9999.......7777.8899*************************......*** PP

                  EECTTCEEEEEEEEEE CS
  GTP_EFTU_D3  96 iReggrTvaaGvvtei 111
                  iRegg+Tv++G vt+i
   CCD24579.1 429 IREGGKTVGTGLVTRI 444
                  **************98 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   1.6   1.6e-23   4.1e-20       1      73 [.     272     341 ..     272     342 .. 0.96
   2 ?   -3.5   0.0       5.5   1.4e+04      51      51 ..     402     402 ..     376     414 .. 0.51

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 1.6e-23
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  Gtv++grv++G+lk+G+e++i+g n++   + +t+++++e+f++++dea+ag+naG++++++  ++ +++G++l
   CCD24579.1 272 GTVVTGRVERGELKRGEELEIVGhNKV---PLKTTVTGIEMFRKELDEAMAGDNAGILLRGIRRDQ-LKRGMVL 341
                  9********************999988...666*********************************.9*****9 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 5.5
                  T CS
  GTP_EFTU_D2  51 g 51 
                   
   CCD24579.1 402 Q 402
                  2 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   9.5e-08   0.00024       2      99 ..      56     167 ..      55     205 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 9.5e-08
                 EEEEESTTSSHHHHHHHHHT....................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg....................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlil 80 
                 ++ +G+   GK+tL  a+t+                    +ka  ++  g T+ + + ++++ ++++  vD+pG  +       +++ +    ++d ++
  CCD24579.1  56 IGTIGHVDHGKTTLTAAITKtlsqhsaegtkasfldyssiDKAPEERARGITISTAHVEYETAKRHYSHVDCPGHAD------YIKNMITGAAQMDGAI 148
                 889****************7777777888888888776544888888899999999999999999*********322......4556666666788888 PP

                 EEEETTTTCSHHHHHHHHH CS
    MMR_HSR1  81 lvvdaseeklkpldeelee 99 
                 +vv a+++++ + +e+l  
  CCD24579.1 149 IVVAATDGQMPQTREHLLL 167
                 8887774444444333333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.4     1e+03     105     126 ..      59      80 ..       5      90 .. 0.74
   2 !   13.8   0.0   1.5e-05     0.039      13      74 ..     141     201 ..     101     210 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.4
                  ECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase 105 vGqSGvGKStLinallpelelk 126
                  +G+   GK+tL  a++ +l+++
   CCD24579.1  59 IGHVDHGKTTLTAAITKTLSQH 80 
                  5666779999999988877665 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.5e-05
                  EES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-.EEEEEEE-GGG--HHHHHHHHHHHHHH CS
  RsgA_GTPase  13 vaNvdqllivvslkepelslnlldrfLvlaeekgi.epvivlnKiDlleeeeeleelkeelea 74 
                  +a +d ++ivv++++   ++ +    L+la + g+ ++v+ +nK+D +++ e le ++ e+++
   CCD24579.1 141 AAQMDGAIIVVAATD--GQMPQTREHLLLARQVGVqHIVVFVNKVDTIDDPEMLELVEMEMRE 201
                  899**********94..4444555667777777774778889*********966666666554 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0028       7.1       6      23 ..      58      75 ..      54      98 .. 0.82
   2 ?    5.7   0.0    0.0046        12      39     116 ..     123     200 ..     108     208 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0028
   PduV-EutP  6 liGkvgsGKttLtqalkg 23
                 iG+v+ GKttLt a+++
  CCD24579.1 58 TIGHVDHGKTTLTAAITK 75
                69***********99976 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0046
   PduV-EutP  39 eviDtPGeylenrklysalivtsaeadvialvqdateeesvfppgf....asvfnkeviGiitkidlaedeenieaveelLk 116
                 + +D+PG    +  + + +i+ +a+ d   +v++at+ +   + +     ++v  ++++  + k+d+ +d e +e ve +++
  CCD24579.1 123 SHVDCPG----HADYIKNMITGAAQMDGAIIVVAATDGQMPQTREHlllaRQVGVQHIVVFVNKVDTIDDPEMLELVEMEMR 200
                 4689999....4677788899999999888888888776655544311113444567788899***********99998776 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.98   2.5e+03       8      22 ..      61      75 ..      56      85 .. 0.71
   2 ?   12.7   0.0   2.9e-05     0.073     104     169 ..     136     202 ..     125     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.98
                STTCCHHHHHHHHHC CS
        cobW  8 flGsGKTtLlnhlle 22
                 +  GKTtL  ++++
  CCD24579.1 61 HVDHGKTTLTAAITK 75
                55579***9888773 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 2.9e-05
                 HHHHHCCCECEEEEEEETTTH.CCHCCHHHHHHHHHHTSSEEE.EE-HHHHCHC..HHHHHHHHHHH CS
        cobW 104 eelksdltldavvavvDaknleaeeekieekaedqlaaadllv.lnKtDlldeeallekleerlrql 169
                 + ++ ++++d+ + vv a+  +  +++++ ++ +q+ +  ++v +nK+D++d+ ++le +e ++r+l
  CCD24579.1 136 NMITGAAQMDGAIIVVAATDGQMPQTREHLLLARQVGVQHIVVfVNKVDTIDDPEMLELVEMEMREL 202
                 56778999**********9999999************99987648*********9999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3088.47
//
Query:       CCD24580.1  [L=148]
Description: hypothetical protein NDAI_0D02660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-20   71.9   0.1    5.1e-20   71.2   0.1    1.4  1  ATP_sub_h  ATP synthase complex subunit h
  ------ inclusion threshold ------
      0.031   14.8   0.0      0.041   14.5   0.0    1.3  1  DUF2407    DUF2407 ubiquitin-like domain


Domain annotation for each model (and alignments):
>> ATP_sub_h  ATP synthase complex subunit h
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.1   5.7e-24   5.1e-20       2      69 .]      34     107 ..      31     107 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 5.7e-24
   ATP_sub_h   2 tfsttavrrkDlvqdLYlkeLkayk.....pkplkaadaegaVkkwsaPaaPkaPel..eadlaseLkaYeaqev 69 
                 +f+ t+v+r+D+vqdLYl+eLk+++     p++++ +++ +a k+w+aP +P+ P+l  +++ +s Lk+Y++qev
  CCD24580.1  34 NFH-TTVNRQDVVQDLYLRELKSLRngkglPSKEELEASLEAAKQWTAPGTPTKPTLlgQQEEESLLKSYKDQEV 107
                 478.9************************999999**************************************97 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.5e-06     0.041      22      72 ..      28     103 ..       7     132 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.5e-06
     DUF2407  22 ntttvagLkqli.RerlpaelasrrLrLIyaGrlLedttslasslklpees........................v 72 
                 n   + + ++++ R+ + ++l  r L+ +++G+ L ++++l++sl+ +++                         +
  CCD24580.1  28 NMYRTMNFHTTVnRQDVVQDLYLRELKSLRNGKGLPSKEELEASLEAAKQWtapgtptkptllgqqeeesllksyK 103
                 44444444444439999*****************************997767777777766666555444444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       671  (0.0374254); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1069.94
//
Query:       CCD24581.1  [L=220]
Description: hypothetical protein NDAI_0D02670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-50  169.6   0.0    4.9e-50  169.3   0.0    1.1  1  Ras           Ras family
    1.7e-30  105.7   0.1    4.5e-30  104.3   0.0    1.6  2  Roc           Ras of Complex, Roc, domain of DAPkinase
    3.3e-11   43.0   0.0    4.4e-11   42.5   0.0    1.2  1  Arf           ADP-ribosylation factor family
    0.00073   19.9   0.2     0.0082   16.5   0.2    2.2  1  RNA_helicase  RNA helicase
     0.0013   18.8   0.0     0.0023   18.0   0.0    1.5  2  MMR_HSR1      50S ribosome-binding GTPase
      0.005   16.4   0.2      0.021   14.4   0.2    1.9  1  GTP_EFTU      Elongation factor Tu GTP binding domain
     0.0056   16.1   0.0      0.008   15.6   0.0    1.3  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
     0.0079   15.4   1.1        1.2    8.2   0.1    2.7  3  G-alpha       G-protein alpha subunit
  ------ inclusion threshold ------
      0.018   14.5   0.0      0.034   13.6   0.0    1.4  1  Pox_A32       Poxvirus A32 protein
      0.025   14.5   0.1        8.1    6.3   0.0    2.2  2  RsgA_GTPase   RsgA GTPase
       0.03   13.9   0.1      0.051   13.1   0.1    1.3  1  AAA_7         P-loop containing dynein motor region
      0.033   13.6   0.0      0.056   12.9   0.0    1.4  1  SRPRB         Signal recognition particle receptor beta subun
      0.064   13.0   0.1       0.11   12.2   0.1    1.4  1  AAA_24        AAA domain
      0.075   13.0   0.0       0.18   11.8   0.0    1.6  1  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
       0.09   12.1   0.1       0.13   11.5   0.1    1.2  1  ATPase        KaiC
       0.11   12.6   0.6       0.23   11.6   0.2    1.7  2  AAA_33        AAA domain
       0.12   12.7   0.0       0.23   11.8   0.0    1.4  1  AAA_16        AAA ATPase domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.3   0.0   4.7e-53   4.9e-50       1     160 [.      15     171 ..      15     173 .. 0.98

  Alignments for each domain:
  == domain 1  score: 169.3 bits;  conditional E-value: 4.7e-53
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 KlvlvGd+++GKt+++ r+ +++F+++y++Tigv+ +  ++ ++  e+k++ wDTAGqe+f  lr+ yy +a++ ++++d+tsr +++nv +w++++ r
  CCD24581.1  15 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNYGEIKFDCWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVR 113
                 99************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellrei 160
                 v+e n+pivL+GnKvD++e r+v++++   ++++++l+++++SAk+n+n+e+ f  l+r++
  CCD24581.1 114 VCE-NIPIVLCGNKVDVKE-RKVKAKTIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 171
                 ***.7*************6.***998865.***************************9986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   4.2e-33   4.5e-30       1     119 [.      15     128 ..      15     129 .. 0.91
   2 ?   -1.8   0.0       3.3   3.5e+03      54      70 ..     143     159 ..     130     171 .. 0.61

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 4.2e-33
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE..GH.HHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd..sr.ssenlk 96 
                 K+vlvGd+g+GKt+++kr+++++f++k+ +tigv+++  ++ +     n     ++k+++WDtaGqe+f  l++ y+ +a++ i+++d  sr +++n+ 
  CCD24581.1  15 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYT-----N---YGEIKFDCWDTAGQEKFGGLRDGYYINAQCGIIMFDvtSRiTYKNVP 105
                 99**********************************9877632.....2...34799*******************************65334679*** PP

                 HHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  97 eWlkelkkvagkspvilvgnkiD 119
                 +W ++l +v++++p++l+gnk+D
  CCD24581.1 106 NWHRDLVRVCENIPIVLCGNKVD 128
                 **********************9 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.3
                 TCEEEEEEEE-SGGCTT CS
         Roc  54 kkvklniWDtaGqerfr 70 
                 +k +l+ +D++ + +++
  CCD24581.1 143 RKKNLQYYDISAKSNYN 159
                 34567888887776665 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   4.2e-14   4.4e-11      14     140 ..      13     142 ..       5     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 4.2e-14
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEEEEE....TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHH CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTigfnveelei....knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkal 107
                  ++++l+G  ++GKtT +k+  ++e+++  + Tig +v+ l++     ++kf +wD  Gqek   l + Y+ + +  i + D++ r   ++  +  + l
  CCD24581.1  13 TFKLVLVGDGGTGKTTFVKRHLTGEFEKkYIATIGVEVHPLSFytnyGEIKFDCWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDL 111
                 5799***************999998876489********9975555599**********************************9999888888888888 PP

                 CTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHT CS
         Arf 108 leeeelkevallvlaNKqDlpealseeelrell 140
                 ++    +++++++ +NK D++e   +++  +  
  CCD24581.1 112 VRV--CENIPIVLCGNKVDVKERKVKAKTITFH 142
                 876..5689***********9877665544333 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2   7.7e-06    0.0082       2     101 ..      17     139 ..      16     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 7.7e-06
  RNA_helicase   2 wlyGpsgeGKStlake.Lakallkkl..................klkkkdsvys.rnpeddfwdgYt..gqevvvidDfgqvkdee.npsdlaelir 75 
                   +l+G+ g+GK+t++k+ L+ +++kk+                  + k + +  + +++     dgY    q  ++++D+ ++ + +  p++  +l+r
    CCD24581.1  17 VLVGDGGTGKTTFVKRhLTGEFEKKYiatigvevhplsfytnygEIKFDCWDTAgQEKFGGLRDGYYinAQCGIIMFDVTSRITYKnVPNWHRDLVR 113
                   799***********9878888888889*************99864444444444344555556999886788899*****9999888999******* PP

  RNA_helicase  76 lvsstpyplnmasleekgtlftSkvv 101
                   ++++ p+ l+  +++ k++ +++k +
    CCD24581.1 114 VCENIPIVLCGNKVDVKERKVKAKTI 139
                   *****************999999887 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.2e-06    0.0023       2     114 .]      16     126 ..      15     170 .. 0.79
   2 ?   -1.3   0.0       2.2   2.3e+03      53      53 ..     152     152 ..     122     210 .. 0.50

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 2.2e-06
                 EEEEESTTSSHHHHHHH.HHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH.HHHHHHHHHHCTSEEEEEEETTTTCSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLina.ltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek.glgkaflaleeadlillvvdaseeklkpldeel 97 
                  ++vG   +GK+t++++ ltge + +  ++ g+  ++  +  ++++ ++  +Dt+G  e    +  gl++ +  + ++ +i++ v ++  ++k++    
  CCD24581.1  16 LVLVGDGGTGKTTFVKRhLTGEfEKKYIATIGVEVHPLSFYTNYGEIKFDCWDTAG-QE----KFgGLRDGYYINAQCGIIMFDVTSR-ITYKNV---- 104
                 689************87367777777788889999998888889999*********.54....4479999999777777666666633.334333.... PP

                 HHHHHH.....TTSEEEEEEES CS
    MMR_HSR1  98 eellee.....akkplilvlnk 114
                  ++ ++     +++p++l+ nk
  CCD24581.1 105 PNWHRDlvrvcENIPIVLCGNK 126
                 3333223334567788777776 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.2
                 C CS
    MMR_HSR1  53 t 53 
                 +
  CCD24581.1 152 I 152
                 2 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2     2e-05     0.021      53     150 ..      45     145 ..      12     212 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2e-05
                 TSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHH CS
    GTP_EFTU  53 giTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrlkaelkeiveev 146
                  i ++++  s+++++ + ++ + Dt G ++F       +  + + ++++d+++      v +  + ++r++  e++pi+++ NK+D  + ++k    + 
  CCD24581.1  45 TIGVEVHPLSFYTNYGEIKFDCWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRityknVPNWHRDLVRVC--ENIPIVLCGNKVDVKERKVKAKTITF 141
                 4667788888999999************************************7722222555555555555..69***********9977777666665 PP

                 HHHH CS
    GTP_EFTU 147 kqkl 150
                 ++k 
  CCD24581.1 142 HRKK 145
                 5544 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.6e-06     0.008       1     133 [.      15     139 ..      15     166 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.6e-06
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrf...lgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedle 96 
                 k++L+G +g GKt+  +        +      ati ve + + f   +g+++++ wD  Gqe+f      ++  +i  ++g+++  fDv+sr   +++ 
  CCD24581.1  15 KLVLVGDGGTGKTTFVKRHLTGEFEKK---YIATIGVEVHPLSFytnYGEIKFDCWDTAGQEKFGGL---RDGYYINAQCGIIM--FDVTSRITYKNVP 105
                 799**********98876555444333...334555555555441116779************9887...58888888888765..7999775444444 PP

   Gtr1_RagA  97 tlkeilealrqyspeakvfvlihKmDliqedereeif 133
                 ++    + l+++ +++ +    +K+D  +++ +++++
  CCD24581.1 106 NW---HRDLVRVCENIPIVLCGNKVDVKERKVKAKTI 139
                 44...44555555666666666777776655555444 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1    0.0011       1.2      23      42 ..      13      32 ..       3      41 .. 0.85
   2 ?   -0.6   0.0      0.54   5.7e+02     186     213 ..      43      73 ..      37      74 .. 0.86
   3 ?    4.4   0.1     0.016        17     267     294 ..     115     142 ..     109     177 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0011
                EEEEEEEESTTSSHHHHHHH CS
     G-alpha 23 evkllllGqseSGKsTilkq 42
                ++kl+l+G ++ GK+T++k 
  CCD24581.1 13 TFKLVLVGDGGTGKTTFVKR 32
                68***************995 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.54
                 ----SEEEEEEEC....T-TEEEEEEEE-SSH CS
     G-alpha 186 lktvGisetkfev....dsklefrivdvgGqr 213
                 + t+G++ + +++    + +++f  +d++Gq 
  CCD24581.1  43 IATIGVEVHPLSFytnyG-EIKFDCWDTAGQE 73 
                 679999999999999966.99*********96 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.016
                 GTTSEEEEEEE-HHHHHHHCCCS-GGGC CS
     G-alpha 267 lkntpiiLflnKlDileeKlkkgklsky 294
                  +n+pi+L  nK+D+ e+K+k + ++ +
  CCD24581.1 115 CENIPIVLCGNKVDVKERKVKAKTITFH 142
                 689*****************88866553 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   3.2e-05     0.034      13      35 ..      13      35 ..       8      50 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 3.2e-05
     Pox_A32 13 pFrlalvGgsGsGktvyLlsLlr 35
                 F+l+lvG  G Gkt++++  l+
  CCD24581.1 13 TFKLVLVGDGGTGKTTFVKRHLT 35
                6****************997554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0077       8.1     102     118 ..      16      32 ..       8      50 .. 0.80
   2 ?    6.2   0.0    0.0086       9.1      45      92 ..     116     162 ..      88     173 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0077
                  EEEECSTTSSHHHHHHH CS
  RsgA_GTPase 102 svlvGqSGvGKStLina 118
                   vlvG  G GK+t++++
   CCD24581.1  16 LVLVGDGGTGKTTFVKR 32 
                  69************975 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0086
                  TT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHH CS
  RsgA_GTPase  45 kgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkeglee 92 
                  ++i++v++ nK+D+ e++    ++ +  ++ +++ + +sak++ ++e+
   CCD24581.1 116 ENIPIVLCGNKVDVKERKV-KAKTITFHRKKNLQYYDISAKSNYNFEK 162
                  689***********99999.6666777778889999999998877776 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   4.9e-05     0.051      35      64 ..      15      45 ..      12      58 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.9e-05
       AAA_7 35 pvllvGptGtGKtviikd.llkkldkekyls 64
                +++lvG+ GtGKt+ +k+ l+ +++k+ + +
  CCD24581.1 15 KLVLVGDGGTGKTTFVKRhLTGEFEKKYIAT 45
                5789**************6666676444444 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.3e-05     0.056       6     122 ..      16     127 ..      12     149 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.3e-05
                 EEEE-STTSSHHHHHHHHHHSS---B---S...S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHH CS
       SRPRB   6 vllvGlsdsGKTslftrLttdsvkktvtSq...essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllye 101
                 ++lvG   +GKT++ +r +t++++k +++    e +    +++  + k++  D  G+ek+   l + +  +++   ++f v S i  k+v +    l+ 
  CCD24581.1  16 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATigvEVHPLSFYTNYGEIKFDCWDTAGQEKFG-GLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVR 113
                 789******************99998887633233333344899999************96.6999999999999999*******99999765443333 PP

                 HHHHHHHHTT---EEEEEE-T CS
       SRPRB 102 illiteklkdavdiliACnKq 122
                 +        ++++i++  nK 
  CCD24581.1 114 VC-------ENIPIVLCGNKV 127
                 32.......345555555555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   0.00011      0.11       4      22 ..      15      33 ..      13      70 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
      AAA_24  4 kiliyGpsgiGKTtlakel 22
                k++++G+ g+GKTt++k+ 
  CCD24581.1 15 KLVLVGDGGTGKTTFVKRH 33
                899*************975 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00017      0.18      21      41 ..      15      35 ..       2      44 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00017
                EEEEEESTTSSHHHHHHHHHH CS
        TsaE 21 vilLeGdLGaGKTtlvrglak 41
                 ++L Gd G+GKTt+v+  + 
  CCD24581.1 15 KLVLVGDGGTGKTTFVKRHLT 35
                389*************98665 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00013      0.13      23      75 ..      17      67 ..      11      78 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
      ATPase 23 litGepGtGKtifalqFlikgaekygepgvfvtveepaedlrenakslGwdle 75
                 ++G+ GtGKt+f+++ l    ek  +    + ve ++ +++ n  ++  d  
  CCD24581.1 17 VLVGDGGTGKTTFVKRHLTGEFEK--KYIATIGVEVHPLSFYTNYGEIKFDCW 67
                468***************999888..788899999999999999888777765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.2   0.00021      0.23       3      20 ..      17      34 ..      16      47 .. 0.88
   2 ?   -2.7   0.0       5.7     6e+03      16      47 ..     168     200 ..     167     209 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00021
      AAA_33  3 llvGlpGsGKstlaerll 20
                +lvG  G+GK+t+++r+l
  CCD24581.1 17 VLVGDGGTGKTTFVKRHL 34
                789*************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 5.7
      AAA_33  16 aerllkklgavllssdtlrr.rlfgtdqqsktd 47 
                 a++l+ + + ++++s++l    + +++q  +++
  CCD24581.1 168 ARKLAGNPQLEFVASPALAPpEVQVDEQLMQQY 200
                 566666666666666665544444444333333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00022      0.23      27      54 ..      16      44 ..      11      67 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00022
      AAA_16 27 vllsGesGvGKsslv.rellralekdggi 54
                ++l+G+ G+GK++ v r+l  ++ek+++ 
  CCD24581.1 16 LVLVGDGGTGKTTFVkRHLTGEFEKKYIA 44
                689************77777788888544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1588.07
//
Query:       CCD24582.1  [L=386]
Description: hypothetical protein NDAI_0D02680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-89  297.8   1.2    5.3e-88  294.9   1.2    1.9  1  IF-2B     Initiation factor 2 subunit family
  ------ inclusion threshold ------
      0.046   13.7   0.0      0.096   12.6   0.0    1.5  1  DUF2621   Protein of unknown function (DUF2621)
       0.08   13.0   0.1       0.18   11.8   0.1    1.5  1  DUF4570   Domain of unknown function (DUF4570)
       0.11   11.8   0.7       0.17   11.3   0.7    1.2  1  Lyase_1   Lyase


Domain annotation for each model (and alignments):
>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.9   1.2   1.2e-91   5.3e-88       1     282 []      34     367 ..      34     367 .. 0.96

  Alignments for each domain:
  == domain 1  score: 294.9 bits;  conditional E-value: 1.2e-91
                 SS-SHHHHHHHHHHHHHHHHHHCCCSTHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHCCTTTSSHHHHHHH..................... CS
       IF-2B   1 kvrGspaiaiaalevllevikdaktskvaeLkeelrkaidlLkkarPtavslgnairrllkeiselksssdvkeakks..................... 78 
                 +++Gs+aia+++l++l+++i++a++s+v+eL++++r+ +++L+ka+Pta+s+gn+irr+l+ i++++ ++d +e ++s                     
  CCD24582.1  34 QIQGSYAIALETLQLLKRFISAARWSHVNELISQIRHLANRLEKAQPTAFSCGNVIRRILA-ILRDEIEEDNNESSASndpqnatssssstaeplissm 131
                 79***********************************************************.666666666666666666777**************** PP

                 ............................HHHHHHHHHHHHHHHHHHHHHHHHTTC-TTEEEEEES.--SHHHHHHHH.HHHTTEEEEEEEEEXTT.TTH CS
       IF-2B  79 ............................liekikelikeieeadekigdiaaelikdgdtilTic.nsktvlevlra.aakekkkfkVivvEsrP.rlq 146
                                             +i+ ik+li+ei ++de i++ia++li+d++++lT++ +sktvl++l+a +++ +++f+V+v+E++P +++
  CCD24582.1 132 fnllqkpeqnlnnsqtkkyktktdfrqvAIQGIKDLIDEITNIDEGIQQIAIDLIHDHEILLTPTpDSKTVLKFLIAaRERGNRTFTVLVTEGFPtNTS 230
                 *****************************************************************************677788************8888 PP

                 H.HTHHHHHHHTTXEEEEEEGGGHHHHHHCTESEEEEEXSEEETTSE.EEEETTHHHHHHHHHHTTXEEEEEXXGGGBESTSSSGGGSSXXBEXTHHHH CS
       IF-2B 147 G.rltakeLvqagipvtlitdsavayvmseevdkvivGAdrilenGa.iankiGTsslAvlAkefnipvlvvaeslkfservqldedifieerdpeell 243
                 + +++ak+L+q++i++ +i+dsav+++ms+ v kvi+GA +++ nG+ i++ +G+ss++ +A+ef++pv++va+++k+s+ +++d+++f+e+++++++l
  CCD24582.1 231 NaHQFAKTLAQHDIETIIIPDSAVFALMSR-VGKVIIGARAVFINGGsISSTAGVSSVCECANEFKTPVFAVAGLYKLSPLYPFDQEKFVEFGGSQQIL 328
                 9*****************************.***************99*************************************************** PP

                 EETTEESSTTTEEEEEBSEEEEEGGGXSEEEETTEEEXC CS
       IF-2B 244 nitgeriaeeelkvvnpafDvtPpelItliITevGvlpp 282
                 ++t+++    +l+++np++D+ Ppe+I+++IT++G+++p
  CCD24582.1 329 PKTSHNNGTMRLDTINPITDYIPPENINIYITNIGGFNP 367
                 *************************************98 PP

>> DUF2621  Protein of unknown function (DUF2621)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.2e-05     0.096      50     125 ..     128     206 ..     111     216 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
     DUF2621  50 iektrhlwtdeekelleelvsp..vpelfrdvakekiagkigela.leekakeitedliikGyilatpkrdhkflkkkl 125
                 i+   +l ++ e++l ++  +       fr+va + i   i e++ ++e  ++i  dli    il tp  d k + k l
  CCD24582.1 128 ISSMFNLLQKPEQNLNNSQTKKykTKTDFRQVAIQGIKDLIDEITnIDEGIQQIAIDLIHDHEILLTPTPDSKTVLKFL 206
                 5555556666666666555544113457***************9659**************************999887 PP

>> DUF4570  Domain of unknown function (DUF4570)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1     4e-05      0.18      16      77 ..     125     187 ..     118     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4e-05
     DUF4570  16 eeiLaqRalLLqqmeseledqkk.kkasqaeaskaakkRNkqllqdleaaekelkkrakqlpe 77 
                 e +++    LLq+ e++l+++++ k ++++ + ++a +  k l++++ + ++ +++ a  l +
  CCD24582.1 125 EPLISSMFNLLQKPEQNLNNSQTkKYKTKTDFRQVAIQGIKDLIDEITNIDEGIQQIAIDLIH 187
                 566777789********999998466899***********************99998776655 PP

>> Lyase_1  Lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.7   3.7e-05      0.17      48     146 ..      87     182 ..      47     187 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.7e-05
                 HHHHHHHHHHHHHHCHCHHCGGHHHBSSSSSHHHHHHHHHHHHHHHHTTHSSGIIIIITTT--HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH CS
     Lyase_1  48 eeaaaiikaldevleegklddqfvlkviqegsgtavnmnlnevigellgekvepndkvhtgqSsnDqvpTalrlalkkalsekLlpaleqLidalkeka 146
                 ++   i++ l++ +ee + +  +  ++ + +s +     ++ +i+++ + + +p++ ++ +q+     +T++r ++ + +++ L+++++++ +++++ a
  CCD24582.1  87 NVIRRILAILRDEIEEDNNESSASNDPQNATSSS--SSTAEPLISSMFNLLQKPEQNLNNSQTKKYKTKTDFRQVAIQGIKD-LIDEITNIDEGIQQIA 182
                 4555666777766664444433333333333333..3345889999999999****************************55.********99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1156  (0.0644765); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2771.96
//
Query:       CCD24583.1  [L=396]
Description: hypothetical protein NDAI_0D02690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-40  137.6   0.0    7.3e-40  137.1   0.0    1.2  1  Aminotran_5  Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0   4.1e-44   7.3e-40       4     371 .]      11     384 ..       9     384 .. 0.87

  Alignments for each domain:
  == domain 1  score: 137.1 bits;  conditional E-value: 4.1e-44
                  BTTTS----HHHHHHHHHHHHCTCCSSSS..SSSHHHHHHHHHHHHHHHHHHHHHT-STGGGEEEESSHHH.HHHHHHHHCCCC.-TTTSEEE...EE CS
  Aminotran_5   4 dsaAttqkpqeVldalqeyytdynanvhr..svhhlgkeatkaveearekvaelinaeseeeiiftsGtte.ainlvalslars.lkpgdeiv...vt 94 
                  + a+++q+p eVl+++++ + +yn+ +    +++h++k+at+++e  +++++el+n+++++e+ f++G+++ +++  a +la++ + +  +i    + 
   CCD24583.1  11 FGAGPAQLPTEVLQQAAKDLLNYNNLGLGigEISHRSKDATQIIESSKQNLKELMNIPDTHEVFFMQGGGTtGFSSLATNLAAAyVGKTGQIAnagYL 108
                  689********************98776666************************************99888*********99997777766544488 PP

                  TTSHGGGTHHHHHHHHHHTEEEEEE....EBETTSCBE..GGGH..HHH--.TTEEEEEEESBETTTTE.B--HHHHHHHHHHTT-EEEEE-TTTTTT CS
  Aminotran_5  95 eaehhanlvpwqelakrtgakvkvi....pldeegeld..ldel..eklln.ektklvaithvsnvtGt.iqpveeigklakkkgalvlvDaaqavgh 182
                  +++ ++     qe++ r  +  ++i     +++eg+    +de   e+ ++ +k ++v+++ +++v+G+ ++++++ +  + + ++ +++D ++ +++
   CCD24583.1 109 VTGSWSLK-SFQEAK-RLHVPCEIIfnskDFNDEGKFVdiPDESlwEDRVKgKKFSYVYLCENETVHGIeWNQLPKCI--VDDPNIELVADLSSDILS 202
                  99****99.888886.5566655553333566777654464444227777669***********************99..9999************** PP

                  S---HHHHTESEEEEETTTTTSSTT-EEEEEEHHHHHTS..S...S.STTS..EEEEETTEEEEHCTTGGGS.SS--HHHHHHHHHHHHHH.HCHHHH CS
  Aminotran_5 183 ipidvkklgvDflafsghKllgPtGiGvlyvrkelleklepl...llggem..veevsleettfaeapskfeaGTpnvagiiglgaaleyl.eeigle 274
                  ++idv+k+gv  ++++++K++g +G+++ +++k++l ++e++   ll      v+ + +++ t+ ++ s ++  T +++ + ++++++e+l +++g+e
   CCD24583.1 203 RKIDVSKYGV--IMAGAQKNIGLAGLTLYIIKKSILTNIEKVddtLLHEFDipVTPIAFDYPTVVKNNSAYN--TIPIFTLHVMNLVFEHLiKKGGVE 296
                  **********..************************99966521133343311344555999999*******..************************ PP

                  HHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHT.TEEEEE..E-TTTHHHHHHTT.S-EEEEE--TTS-HHHHH CS
  Aminotran_5 275 aiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdee.gIavrs..GhhcaqplmkrlalegtvRaSlyiynteeevd 369
                  a ek+++++a+ l++ l+++p++++    ++++ +s ++++f+  +    +++L+++ +  +++  Gh+++          g++RaS+y++ t + v+
   CCD24583.1 297 AQEKENDAKAKILYDILDAYPNFYN--LPVKPNARSRMNVVFTLKKEGLDEKFLKDAaERKLTGlkGHRSV----------GGFRASIYNALTLASVE 382
                  ***********************99..3589***********************999888999899*****..........**************999 PP

                  HH CS
  Aminotran_5 370 rl 371
                  +l
   CCD24583.1 383 KL 384
                  87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2961.47
//
Query:       CCD24584.1  [L=63]
Description: hypothetical protein NDAI_0D02700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-30  102.8   5.6    9.1e-30  102.6   5.6    1.0  1  Ribosomal_S30  Ribosomal protein S30


Domain annotation for each model (and alignments):
>> Ribosomal_S30  Ribosomal protein S30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   5.6   5.1e-34   9.1e-30       1      58 []       3      61 ..       3      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 5.1e-34
                   XTBX-STTTTHHHHHS-------------THHHHHHHHHHHTTS.SS--SSSSS-S--- CS
  Ribosomal_S30  1 kvhGsLarAGKVrnqTPKveKqekkKkptGRakkRlqYnrRfvn.vvvggkkkkgpnsq 58
                   kvhGsLarAGKV++qTPKveK ek+K+p+GRa+kRl+Y+rRfvn ++++gk+k++p+++
     CCD24584.1  3 KVHGSLARAGKVKSQTPKVEKTEKPKQPKGRAYKRLLYTRRFVNvTLTNGKRKMNPSPN 61
                   9*******************************************99999*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 523.74
//
Query:       CCD24585.1  [L=661]
Description: hypothetical protein NDAI_0D02710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-35  121.4   0.0    2.3e-35  120.9   0.0    1.2  1  WH1       WH1 domain
    2.1e-06   27.4   1.0    4.7e-06   26.3   1.0    1.6  1  WH2       WH2 motif


Domain annotation for each model (and alignments):
>> WH1  WH1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.9   0.0   2.6e-39   2.3e-35       2     110 ..      14     123 ..      13     124 .. 0.97

  Alignments for each domain:
  == domain 1  score: 120.9 bits;  conditional E-value: 2.6e-39
                 SSS...E.EEEEEEEEEEEEEETTTTCEEEECECEEEEEEEEETTTTEEEEEEEETT.T-SEEEEEEE-SS---B-SSSSEEEEESSSSEEEEEESSHH CS
         WH1   2 sllgkkc.qtiasavaqvyladpakketWikakhagavslvkdstqnsyflrlvklq.dakvvieqeiyknleynqarqkfhtfederavvGLnFasee 98 
                 ++l+k + ++i+ +va++y+a+p+k e W+++  +ga++lv+d++ n++fl+lv+++ ++ v+++qe+y n+ey+q+r++fhtfe e++++GL F+++ 
  CCD24585.1  14 RALPKSSnKIIDITVARLYIAYPDKSE-WKYTGLSGAIALVDDTVGNTFFLKLVDINgHRGVLWDQELYVNFEYYQDRTFFHTFELEECFAGLLFVDIH 111
                 578999989******************.*****************************99**************************************** PP

                 HHHHHHHHHHHH CS
         WH1  99 eakkFakkvqea 110
                 ea++F+k+vq++
  CCD24585.1 112 EAAHFLKRVQKR 123
                 **********97 PP

>> WH2  WH2 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   1.0   5.2e-10   4.7e-06       1      27 [.     567     594 ..     567     597 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 5.2e-10
                 X-TCCHHHHHHHHHH...HTTBSS--XE CS
         WH2   1 ggggRgALLadIraGs.kaqLKKveetn 27 
                 g++gR+ALLa+Ir+++ +  LKKv+++ 
  CCD24585.1 567 GDPGRDALLASIRGAGgINALKKVDKSQ 594
                 689*********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       739  (0.0412181); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 4483.41
//
Query:       CCD24586.1  [L=278]
Description: hypothetical protein NDAI_0D02720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-18   67.6   0.0    8.3e-18   64.6   0.0    1.9  1  ECH_1         Enoyl-CoA hydratase/isomerase
    3.4e-08   33.4   0.0    6.4e-08   32.5   0.0    1.3  1  ECH_2         Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
      0.087   13.1   0.1       0.18   12.1   0.1    1.5  1  Init_tRNA_PT  Rit1 DUSP-like domain


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   1.4e-21   8.3e-18       3     210 ..      11     233 ..       9     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 1.4e-21
                 ETTEEEEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHCHHHHHHHCCHH.HHHH............HHHHSS CS
       ECH_1   3 eagvaviklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeekakqallkeevl.elwt............klytvp 88 
                 e  v  i+ln+P+++N+l+     E++  lek+++d+++    L +   +F++G+ +  ++   +a++++++ + + + +               ++  
  CCD24586.1  11 EGPVFIITLNDPRHLNSLTFDDFVEIALLLEKADNDPKIFITALQSTADFFSSGGKFSTVLDSRPANDNEINGASKvSQMIgvisspnvfvadTFRKHR 109
                 567999*******************************************************99996666655433303332111111111111344556 PP

                 SEEEEEE-SEEETHHHHHHHHSSEEEEETTTEEE-.GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESG..GGHHHHHH CS
       ECH_1  89 kpviaavnGaaigGGlelalacDiviaadnasfgl.nelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpe..eqlleeal 184
                 k ++  +nG a+g  + l++ cDiv++ +++++ l ++++lG+ +++g + +la+k+G +k +e l++ k+++ ++++   l  + v +  +++ ++ +
  CCD24586.1 110 KLLVCCLNGPAVGLSACLVMLCDIVYCKNDSVYLLfPFTNLGFSAEVGSSVTLAKKIGINKTNEHLIFSKPLTYEDLKGKVLNYNYVMKdtDEFNKKVV 208
                 777889**************************76549****************************************9888876655554789999999 PP

                 HHHHHHHHSCHHHHHHHHHHHHHHHH CS
       ECH_1 185 elaeklaekspaalrqlkealnakle 210
                   ++k ++  + +l+ lk a++++++
  CCD24586.1 209 LDLQKKLKGTNISLNNLK-AMKTQIR 233
                 999999977777777776.5666655 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.1e-11   6.4e-08       2     141 ..      15     164 ..      14     189 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 1.1e-11
                 EEEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS-TH.....H.HH....HHHHHHHHHHHHHC-SS-E CS
       ECH_2   2 gvitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakegkke.....e.ee....ffreeYklnyliatypkpv 90 
                  +itLn p+ lN+L+ + + +++  l++ ++d+++ +  l+++    f++Gg + ++ +++ ++++e     + ++    + + +  +  +  + +k +
  CCD24586.1  15 FIITLNDPRHLNSLTFDDFVEIALLLEKADNDPKIFITALQSTA-DFFSSGGKFSTVLDSRPANDNEingasKvSQmigvISSPNVFVADTFRKHRKLL 112
                 58****************************************76.9**************99995444443323441111333344455566677899* PP

                 EEEE-BEEETHHHHHHTTSSEEEE-TT-.EEE--GGGGT----TTHHHHHHC CS
       ECH_2  91 valmdGivmGgGvGlsvhgsfrvvtert.vfAmPEtaIGlfPDvGgsyfLsr 141
                 v+ ++G ++G  + l + + +    +++  +  P t++G+  +vG s  L++
  CCD24586.1 113 VCCLNGPAVGLSACLVMLCDIVYCKNDSvYLLFPFTNLGFSAEVGSSVTLAK 164
                 ******************998766555526789**************99987 PP

>> Init_tRNA_PT  Rit1 DUSP-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1     3e-05      0.18      27      63 ..     100     134 ..      88     180 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3e-05
  Init_tRNA_PT  27 fvrkrlsedkkkkilvacetGkdlsvgvaLailcklf 63 
                   fv++++++++  k+lv+c +G  +  + +L++lc ++
    CCD24586.1 100 FVADTFRKHR--KLLVCCLNGPAVGLSACLVMLCDIV 134
                   7888888877..9*********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1970.81
//
Query:       CCD24587.1  [L=1225]
Description: hypothetical protein NDAI_0D02730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-19   69.4   2.3    4.8e-19   68.4   2.3    1.5  1  Fungal_trans  Fungal specific transcription factor domain
    8.7e-06   25.8  10.8    2.2e-05   24.5  10.8    1.7  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   2.3   5.3e-23   4.8e-19       1     266 [.     324     599 ..     324     600 .. 0.84

  Alignments for each domain:
  == domain 1  score: 68.4 bits;  conditional E-value: 5.3e-23
  Fungal_trans   1 ldrffsnfhpqfpilhk...psflpktssenssksayasplll......lailalGalfsesetkesnssltsesqefiafplraeilihedfssps 88 
                   ld+ff+ ++  +p+l++    sf++ +   n+++ +y ++ +       ++++++ a +  ++ k++ +       +++ ++  a   i + + s+ 
    CCD24587.1 324 LDTFFTRLQFKYPLLDEneiYSFHEAY--INNRIYRYPPNEFHfncgrmWLVYSISACLHMTTGKYKGQ-------PPVRYFSTAIRHI-TRCGSQL 410
                   799**************9999999999..55555555555555555667*****************833.......5555555555555.6777777 PP

  Fungal_trans  89 sslwilqsLlllelyektssdralher.hhgvavr.larslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinl 183
                   +s++ ++ L ll ly + +++ +++ + ++g +++ +  +l+L+r+  +       ++ ++ ++   R++w+++ l+++i++ +G  +++++s+i+l
    CCD24587.1 411 TSMEKVELLTLLVLYILRTDRDSMVLYeIIGDVMKiCQLDLKLNRRNDHDD-----TVLAN-KKL--RIFWCVYLLERMICVAVGKSYIIKESDIDL 499
                   77******************98888778*******************9988.....35555.777..****************************** PP

  Fungal_trans 184 pLPcddddlwesddaseetlvetk....lsneeksrkiasfllaLkkilskiagsl..lsiekqlqqrdlq............seklswveeleral 262
                   pL+++++ ++ s +  e  l++         ++k++ + ++ l+L +i s+++ +l  l  +++   ++++            +e+l+ v++++ +l
    CCD24587.1 500 PLFDESS-FNTSQHQKEPPLYQPHekgtTTTHHKGVHFINQSLKLRRIESQFVEELgiLPDKNFNVTTNTAalttnhhdkfvlREQLPLVRDIFQSL 595
                   ***9999.888888888888775579**9**********************9987521555555555555599999999999999999999999999 PP

  Fungal_trans 263 dnWr 266
                   ++Wr
    CCD24587.1 596 EVWR 599
                   9998 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5  10.8   2.5e-09   2.2e-05       1      31 [.      39      69 ..      39      77 .. 0.94

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.5e-09
                SS-HHHHHCT---STSSSS-HHHHHCTHHHC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCt 31
                ++C  Cr++K KCd k P+C+ C k  ++C+
  CCD24587.1 39 RSCLLCRRRKQKCDHKLPSCTACLKAAVKCV 69
                59****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1035  (0.0577277); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.41
# Mc/sec: 8950.35
//
Query:       CCD24588.1  [L=974]
Description: hypothetical protein NDAI_0D02740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-25   88.4   7.8    3.5e-25   88.4   7.8    3.0  3  CBM_21    Carbohydrate/starch-binding module (family 21)
     0.0091   16.6   7.3     0.0091   16.6   7.3    3.5  2  CBM53     Starch/carbohydrate-binding module (family 53)
  ------ inclusion threshold ------
      0.057   13.2   2.6       0.22   11.4   2.6    2.0  1  NOP19     Nucleolar protein 19


Domain annotation for each model (and alignments):
>> CBM_21  Carbohydrate/starch-binding module (family 21)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.5   8.9e+03      95     106 ..      88      99 ..      72     100 .. 0.74
   2 !   88.4   7.8   5.9e-29   3.5e-25       2     112 ..     268     387 ..     267     388 .. 0.88
   3 ?   -4.7   2.3         3   1.8e+04      72     106 ..     618     658 ..     599     660 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.5
      CBM_21  95 evneeeyWdnNe 106
                 e ++e++W nN+
  CCD24588.1  88 ELETEKFWFNNR 99 
                 456788999996 PP

  == domain 2  score: 88.4 bits;  conditional E-value: 5.9e-29
      CBM_21   2 lqeqkvllerlelsk.dkkvlvGlvaVknlafeKavavrytldnWktilevpaeyvksaeeslkennt....drFkFkiklknllnseka....klelc 91 
                 lq+q++ l++l  +  d+ ++vGl++V+nl+feK+ +v++t+++Wk++++v+a y+ks++++ +e+++    ++ kF +++knll+s+ +    ++elc
  CCD24588.1 268 LQGQNIRLHSLDQDPkDSYKIVGLIYVNNLNFEKFSEVKFTFNHWKDMHYVSAVYNKSITSNIDEFKFiidlNSLKFFLQVKNLLSSKVDqnnlSIELC 366
                 57899******998878889*************************************9888888887777777888888877777766446677***** PP

      CBM_21  92 ikYevneeeyWdnNegkNYev 112
                 ++Y+vn+e+y+dnN+++NY++
  CCD24588.1 367 CRYDVNNETYYDNNNYQNYHI 387
                 *******************98 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 3
      CBM_21  72 kFkiklknllnseka......klelcikYevneeeyWdnNe 106
                 +++ ++ nl n +++      + + c +Y+    + ++nN 
  CCD24588.1 618 NYSFNSVNLKNPNNNplndndNEDSCFNYSSPFLSTYNNNG 658
                 44444444444433333344478889999998888888885 PP

>> CBM53  Starch/carbohydrate-binding module (family 53)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.9      0.15     9e+02      50      79 ..     177     207 ..     170     209 .. 0.73
   2 !   16.6   7.3   1.5e-06    0.0091      14      80 ..     304     388 ..     292     389 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.15
       CBM53  50 vpkeaseldfvfds.egeenWDNNngqnYkv 79 
                 v ++   +++v +  ++++  DNN+g+ +++
  CCD24588.1 177 VMENDDGHNMVNNAhNHHSLIDNNHGNHFTY 207
                 555555577776445779999******9986 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.5e-06
       CBM53  14 tlhygfngWkssqdvamtksassgdseedwfeatvtvpkea.....seldfvfds.....................egeenWDNNngqnYkvp 80 
                  ++++fn+Wk+ + v + +  +s +s+ d f++ +++++       +       +                     ++e+++DNNn qnY++ 
  CCD24588.1 304 EVKFTFNHWKDMHYVSAVYN-KSITSNIDEFKFIIDLNSLKfflqvK-------NllsskvdqnnlsielccrydvNNETYYDNNNYQNYHIS 388
                 5899**********999999.57778889999999999855444441.......133334555667777777789999*************96 PP

>> NOP19  Nucleolar protein 19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.6   3.6e-05      0.22      34      94 ..     888     948 ..     869     957 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.6e-05
       NOP19  34 eseeekssssedkeeledskkaFfnLpvvqiGsGLsfseeeeesskedihtiGeFiksdkk 94 
                 e++e+++++++d ee ++ +++F+n p+  +Gs  ++++++++++++d++t    i+s  +
  CCD24588.1 888 EEQERQQEEENDFEEHNKMQNEFINTPIALAGSLDNINSDHNNDNNTDTNTNNSNIQSYSS 948
                 5566666667899********************999999999*******998777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1581  (0.0881812); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 6931.19
//
Query:       CCD24589.1  [L=1515]
Description: hypothetical protein NDAI_0D02750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-70  238.1   0.4    3.5e-64  216.7   0.0    2.7  2  Pkinase      Protein kinase domain
    9.1e-35  120.2   0.1    6.6e-33  114.1   0.0    2.4  2  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.011   15.1   0.0       0.03   13.7   0.0    1.7  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
      0.064   13.2   0.0       0.12   12.3   0.0    1.3  1  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.8e-07    0.0008       3      47 ..      95     137 ..      93     162 .. 0.84
   2 !  216.7   0.0   7.9e-68   3.5e-64      38     263 ..     192     406 ..     178     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.8e-07
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlr 47 
                   ++lG+Gs+G+V  a++ etg+  A+K++ k+++  +k+    +
  CCD24589.1  95 LGKTLGKGSSGRVRLAKNVETGQLAAIKIVPKRNKFVMKN--SNS 137
                 6799*****************************9988776..344 PP

  == domain 2  score: 216.7 bits;  conditional E-value: 7.9e-68
                 CHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTT CS
     Pkinase  38 kkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekg 135
                  ++++  + rEi i+k ++hpn++ lyev+e+k+elyl+leyv+ggel+d+l  +g+l+e+ea +++kqi++g++y+Hs +i+HrDlKpeN+Lid +k+
  CCD24589.1 192 IQNNTYGIEREIVIMKLISHPNVMGLYEVWENKSELYLILEYVDGGELFDYLVSRGKLPEAEAIHYFKQIIQGVSYCHSFNICHRDLKPENLLIDkKKK 290
                 333336799**************************************************************************************6666 PP

                 EEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS CS
     Pkinase 136 elKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei 233
                  +Ki+DFG+a+    ++ l++ +g+++Y +PE++ +++y + ++DvWs+G+il+ lltg+ pf+   + +    ++++      +l+ +  k++ ++++
  CCD24589.1 291 SIKIADFGMAALELPKKLLQTSCGSPHYASPEIVMGKSYhGGPSDVWSCGIILFALLTGHLPFN---D-D----NIKK-----LLLKVQAGKYQMPKNL 376
                 6**********9999999****************766666************************...2.2....3444.....22223456899***** PP

                 -HHHHHHHHHHT-SSGCCSTTHHHHHTSGG CS
     Pkinase 234 seeakdllkkllkkdpkkRltaeellqhpy 263
                 s+eakdl++++l + p+kRlt  e+l+hp 
  CCD24589.1 377 SDEAKDLISRILVVSPSKRLTTVEILNHPL 406
                 ****************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.1    0.0085        38       2      58 ..      94     145 ..      93     166 .. 0.68
   2 !  114.1   0.0   1.5e-36   6.6e-33      42     256 ..     193     402 ..     184     404 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0085
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl 58 
                  +lgk+lG+G+ G+V  ++      ++ +  a+K++ ++++   +++  +++++m+++
   CCD24589.1  94 KLGKTLGKGSSGRVRLAKNV----ETGQLAAIKIVPKRNKFV-MKNSNSNISFMSAT 145
                  6899*************999....666677777774443333.44445555555544 PP

  == domain 2  score: 114.1 bits;  conditional E-value: 1.5e-36
                  HHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEET CS
  Pkinase_Tyr  42 eeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsen 139
                  ++++  + +e+ imk ++hpn++ l+ v  ++++l++++eyv+gG+L ++L ++   kl   + +++  q+ +G++y +s ++ Hrdl   N L++++
   CCD24589.1 193 QNNTYGIEREIVIMKLISHPNVMGLYEVWENKSELYLILEYVDGGELFDYLVSR--GKLPEAEAIHYFKQIIQGVSYCHSFNICHRDLKPENLLIDKK 288
                  455667889********************************************8..9**************************************985 PP

                  T.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEH.HHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHH CS
  Pkinase_Tyr 140 k.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkfts.ksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeely 235
                  k  +ki+DfG+a     ++    ++++  + ++ +pE+++ k++    sDvWs G++l+ ++t g+ p+++ + +++l k+++gk  ++p++ ++e +
   CCD24589.1 289 KkSIKIADFGMAALELPKKLL--QTSC-GSPHYASPEIVMGKSYHGgPSDVWSCGIILFALLT-GHLPFNDDNIKKLLLKVQAGK-YQMPKNLSDEAK 381
                  549*********987444433..3444.4568*********9987527***************.********9999999998775.6789999***** PP

                  HHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 236 elmkkcweedpeeRptfselv 256
                  +l+++ +  +p++R t  e++
   CCD24589.1 382 DLISRILVVSPSKRLTTVEIL 402
                  **************9988876 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.7e-06      0.03     106     173 ..     240     304 ..     222     311 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.7e-06
         Kdo 106 edllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrl 173
                  d+l +  +l+e+   + +k++ + ++  h+ +++H+dl + n+l+++++     i + D+  a+l l
  CCD24589.1 240 FDYLVSRGKLPEAEAIHYFKQIIQGVSYCHSFNICHRDLKPENLLIDKKK---KSIKIADFGMAALEL 304
                 4455554557777777889999999***********************98...677777887777666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.6e-05      0.12     168     197 ..     273     301 ..     267     305 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
                 EE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfedag 197
                 ++H+Dl+p Nll+d+ +   + + Df++a 
  CCD24589.1 273 ICHRDLKPENLLIDKKKKS-IKIADFGMAA 301
                 8*************44444.4789999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1644  (0.091695); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.43
# Mc/sec: 10579.56
//
Query:       CCD24590.1  [L=255]
Description: hypothetical protein NDAI_0D02760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-67  228.5  28.9    1.3e-67  228.3  28.9    1.0  1  Utp11     Utp11 protein
     0.0019   17.8   0.0     0.0059   16.3   0.0    1.8  2  DUF2529   Domain of unknown function (DUF2529)


Domain annotation for each model (and alignments):
>> Utp11  Utp11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.3  28.9   1.5e-71   1.3e-67       1     245 []      10     255 .]      10     255 .] 0.92

  Alignments for each domain:
  == domain 1  score: 228.3 bits;  conditional E-value: 1.5e-71
       Utp11   1 rrnHkERsQpaeRaklGlLEKkKDYklRAkdyhkKqaklkaLreKAaerNpDEFyfgMikskt.kkgvhv.ekekdrgnealsedqvkllktqDlnYvr 97 
                 +++H+ERsQ+++R++lG+LEK+KDY++RA+dyh+K+++lk Lr+K++erNpDE+y++M+++++  kg  v +++ ++++e+ls+dqvkllktqD nYvr
  CCD24590.1  10 KKQHRERSQLNSRSRLGFLEKHKDYVKRAQDYHRKENTLKILRSKVKERNPDEYYHAMHSRRVdAKGLLVtSRRGEDEDESLSTDQVKLLKTQDSNYVR 108
                 79*************************************************************55666668778889999******************* PP

       Utp11  98 tkraierkkiekleeelhlleaeakseakeskkkkknkhivFvdseeeakefdaaekfetepelleeeeeeekeerkenrkkvkq.............. 182
                 t r++e kk+e+  ++l++ +              +++h+vFvd+++++k+f+a+e+f t++ell+         r+enr +++q              
  CCD24590.1 109 TLRQVELKKLENKSKTLMFSA--------------SGNHTVFVDNRDDFKSFNAEEHFGTTTELLT---------RNENRLTKEQlihsalmnpsgnia 184
                 *****************9844..............356****************************.........888888877788888888999999 PP

       Utp11 183 ........k..ekkkeklykeLkarlerekqLkkaeqelelqralmkkgakkkvkkgkkkkaavykwkkeRkr 245
                         +  +kkk k++k +k++lere+qLk++++++++qr++mkkg+kkk+ + +   ++ +kwkk+Rkr
  CCD24590.1 185 sssaimprEslNKKKLKKFKIVKQHLERENQLKEVQSRMDMQREVMKKGSKKKIIDTR--GKVSFKWKKQRKR 255
                 999888862689******************************************9855..4589********9 PP

>> DUF2529  Domain of unknown function (DUF2529)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.25   2.2e+03      89     119 ..      30      60 ..      25      83 .. 0.72
   2 !   16.3   0.0   6.5e-07    0.0059       2      60 ..      96     154 ..      95     225 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.25
                 --HHHHHHHHHHHHHT--EEEEESS---T.. CS
     DUF2529  89 ndkealklakkleekgievvavsskvkeeda 119
                 ++k+ +k a+ ++ k+ ++ ++ skvke+++
  CCD24590.1  30 KHKDYVKRAQDYHRKENTLKILRSKVKERNP 60 
                 5678889999999999999888888888765 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 6.5e-07
                 HHHHHHHHHHHHHHH.HCCHHHHHHHHHHHHHHHHTT--EEEEE-GGGGGGHHHHHCST CS
     DUF2529   2 lkiftTQLtGllkriqekeeesiedaarlLaqavigdgkvyikgfgeleaveaealegk 60 
                 +k+++TQ + +++++++ e +++e+  + L  ++ g+++v+++  ++++ + ae   g+
  CCD24590.1  96 VKLLKTQDSNYVRTLRQVELKKLENKSKTLMFSASGNHTVFVDNRDDFKSFNAEEHFGT 154
                 599**********************************************9988765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1845  (0.102906); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1915.78
//
Query:       CCD24591.1  [L=362]
Description: hypothetical protein NDAI_0D02770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0032   16.3   0.6     0.0032   16.3   0.6    1.8  2  BRO1      BRO1-like domain


Domain annotation for each model (and alignments):
>> BRO1  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.6   1.8e-07    0.0032     293     351 ..      52     110 ..      33     126 .. 0.82
   2 ?   -0.9   0.1     0.031   5.5e+02     315     371 ..     305     360 ..     289     361 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.8e-07
                 ..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1 293 skkaeelledlkglkdvveeklkeaekDNdlIYheevPsesslpeikkaslvkaiplee 351
                 +++++++++++++l+++ eek  +ae D+d I  +++P+ ++lp+ ++++lv+ +   +
  CCD24591.1  52 KAASCTVVSKISDLQTSYEEKDLSAESDDDKIVISIIPNMNTLPSSDQLNLVRIMNAIK 110
                 45678889******************************************999876633 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.031
                 XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1 315 keaekDNdlIYheevPsesslp.eikkaslvkaipleeekeeekseesgkdlFakLvP 371
                 ++ e+DN + Y +++   ++l  +i k++ +++ +l  e++   ++   +d+++k++P
  CCD24591.1 305 NKPERDNSILYGSKIRLVNELLdKIIKVKSYEVEEL--ENPLFLESLVVQDVLKKVIP 360
                 667999**9999999999777424555555555444..23344555667777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       508  (0.028334); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2869.27
//
Query:       CCD24592.1  [L=137]
Description: hypothetical protein NDAI_0D02780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   14.0   0.5      0.054   13.7   0.5    1.1  1  Aha1_N    Activator of Hsp90 ATPase, N-terminal


Domain annotation for each model (and alignments):
>> Aha1_N  Activator of Hsp90 ATPase, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.5     3e-06     0.054      68     135 ..      36     113 ..      21     115 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-06
      Aha1_N  68 kedgkkvkGeieipelsse.nddddyeievsvkk.........deekkekqklkelikskgvpklreklakfvkeLke 135
                 +++++kv+ +i+++ l ++ +++ +   + ++ +         ++e+ +k k+ ++ik    ++lr+++++f+keL +
  CCD24592.1  36 EQSNDKVDAHIKVNTLLNDiTSKPNLAAKLETIQnimikrnlvSTEDTSKPKVWQMIKILTNKELRSAMEDFKKELAK 113
                 78999**************777766654433222344444778667788899*****9999***************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1133.50
//
Query:       CCD24593.1  [L=308]
Description: hypothetical protein NDAI_0D02790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-26   90.9   2.4    7.3e-26   90.9   2.4    2.4  2  TFIIS_M   Transcription factor S-II (TFIIS), central domain
    1.6e-17   63.0   6.4    3.2e-17   62.1   6.4    1.5  1  TFIIS_C   Transcription factor S-II (TFIIS)
    1.8e-08   34.3   2.3    1.8e-08   34.3   2.3    2.3  2  Med26     TFIIS helical bundle-like domain
  ------ inclusion threshold ------
      0.047   13.7   4.9       0.13   12.3   0.7    2.4  2  HypA      Hydrogenase/urease nickel incorporation, metallocha
       0.22   11.8   7.9        1.3    9.3   4.9    2.8  2  PIN_4     PIN domain


Domain annotation for each model (and alignments):
>> TFIIS_M  Transcription factor S-II (TFIIS), central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   3.3     0.078   2.8e+02       8      71 ..       9      86 ..       2      99 .. 0.72
   2 !   90.9   2.4     2e-29   7.3e-26       2     111 ..     146     254 ..     145     255 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.078
                HHHHHHHTT---...-................--THHHHHHHHHHHHHHHT------HHHHHHHHHHHHHS-T..T-HHHH CS
     TFIIS_M  8 relLaealeedsseaee...............eedveelaaeiEealfekekkstdkkykqkvrslvfNLkdk..kNpeLr 71
                + +L + le+ + ++++               e+  +e  + +E   f+   ks+++++ + v+++++  kd   kN++Lr
  CCD24593.1  9 VAVLVKNLEKSKHNDSTvleillklnrevvptEKLLRETKVGVEVNKFK---KSSNEQIAKVVKKMISSWKDTinKNKKLR 86
                5677788888875444466677777666666556777777778988888...67888899999999999998755777777 PP

  == domain 2  score: 90.9 bits;  conditional E-value: 2e-29
                 HHHHHHHHHHHHHTT---...-.--THHHHHHHHHHHHHH.HT------HHHHHHHHHHHHHS-TT-HHHHHTSSSS--STTTTS---TTTSS-HHHHH CS
     TFIIS_M   2 kvRdkcrelLaealeedsseaeeeedveelaaeiEealfe.kekkstdkkykqkvrslvfNLkdkkNpeLrrrvlsgeispeklvkmspeElaseelke 99 
                 k+Rd+++++L++al++ s+     +++ +  ++iE+++f+ +++ +++k+yk+k+r +++N+  k+N++L++++ +++ispe lv+++p+Ela+e+lk+
  CCD24593.1 146 KLRDSVIRALYDALAKGSEH-P-PNSILHTVKSIESEMFKlNNCTENEKAYKEKYRIIYSNIISKNNADLKNKIANNDISPEYLVTCDPKELAPEHLKQ 242
                 68****************53.3.57***************8778888899************************************************* PP

                 HHHHHHHHHHHT CS
     TFIIS_M 100 ereklekealee 111
                 + e+++k++l++
  CCD24593.1 243 KLEEIKKQNLFN 254
                 *********986 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   6.4   8.9e-21   3.2e-17       1      39 []     268     306 ..     268     306 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 8.9e-21
     TFIIS_C   1 akCpkCgsreayffqlQtRsaDEpmtvfykCtkCghrWr 39 
                 ++C kC++++++++qlQtRsaDEp t+f++C +Cg+rW+
  CCD24593.1 268 FTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 306
                 68************************************7 PP

>> Med26  TFIIS helical bundle-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.38   1.4e+03      22      35 ..      10      23 ..       5      26 .. 0.75
   2 !   34.3   2.3     5e-12   1.8e-08       1      51 [.      28      77 ..      28      79 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.38
                HHHHHHHHH-TTS- CS
       Med26 22 GkvVnalrkhkhet 35
                 + V++l k+kh +
  CCD24593.1 10 AVLVKNLEKSKHND 23
                56799999999955 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 5e-12
                HHHHHS---....H.HHHHHSHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHH CS
       Med26  1 kiLaqLeklpitte.tLkstgIGkvVnalrkhkhetaevktlAksLvekWkk 51
                +iL +L++ +++te +L++t++G+ Vn+ +k++  ++++++ +k+ ++ Wk 
  CCD24593.1 28 EILLKLNREVVPTEkLLRETKVGVEVNKFKKSS--NEQIAKVVKKMISSWKD 77
                5999*****88***888************7754..****************6 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.2      0.03   1.1e+02       9      67 ..      28      90 ..      21     112 .. 0.74
   2 ?   12.3   0.7   3.7e-05      0.13      37      94 ..     233     303 ..     201     307 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.03
                HHHHHHHHHH.CCTT..EEEEEEEEEETTCT--HHHHHHHHHHHH...CC.TTTT-EEEEEEE CS
        HypA  9 sivevveeea.keaaarkvtkvkvevGelsgvepeaLefafella...egtvlegaeLeieev 67
                +i+  +++e+  +++  + tkv vev ++++ ++e+++ + + +    ++t+ ++++L+++++
  CCD24593.1 28 EILLKLNREVvPTEKLLRETKVGVEVNKFKKSSNEQIAKVVKKMIsswKDTINKNKKLRLQQQ 90
                455555555535567778899****************99999887677777777777776655 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 3.7e-05
                 CT--HHHHHHHHHHHHCC.TTTT-EEEEE.EE--EEEETTTS-EEECHHHHH.............S-TTTSS CS
        HypA  37 sgvepeaLefafellaegtvlegaeLeie.evpvkvrCreCgkefeleekal.............rCpkCgs 94 
                 +++ pe L++ +e ++++++++    +ie +v  +++C +C+++  +  + l             +C++Cg+
  CCD24593.1 233 KELAPEHLKQKLEEIKKQNLFNAQGATIErSVTDRFTCGKCKEKKVSYYQ-LqtrsadeplttfcTCEACGN 303
                 67899**************976555555537889********76554433.2346788999*********97 PP

>> PIN_4  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.044   1.6e+02      82     102 ..      17      37 ..       4      44 .. 0.75
   2 ?    9.3   4.9   0.00036       1.3      30      81 ..      49     102 ..      47     204 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.044
       PIN_4  82 seseknDnrIlavalelkeek 102
                 ++s++nD+++l++ l+l++e 
  CCD24593.1  17 EKSKHNDSTVLEILLKLNREV 37 
                 24679************9875 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00036
       PIN_4  30 VleELdklKkgsserelarlarqanrlldelleke.sgrlkvqtsaeelp..eee 81 
                 V  E++k+Kk+s+ +++a+ ++++++  +++++k+ + rl+ q++ae  +  +++
  CCD24593.1  49 VGVEVNKFKKSSN-EQIAKVVKKMISSWKDTINKNkKLRLQQQKEAEAAKlnSNQ 102
                 778*********9.99999999999766666555416888888885544421322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2719  (0.151654); expected 358.6 (0.02)
Passed bias filter:                      632  (0.0352502); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2188.27
//
Query:       CCD24594.1  [L=315]
Description: hypothetical protein NDAI_0D02800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-20   72.1   0.0    5.7e-20   70.9   0.0    1.7  1  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
      1e-07   32.3   0.4      1e-07   32.3   0.4    2.0  2  CSTF2_hinge     Hinge domain of cleavage stimulation factor s
    4.9e-07   29.2   0.2    9.8e-07   28.3   0.2    1.5  1  CSTF_C          Transcription termination and cleavage factor
     0.0003   20.6   0.0    0.00077   19.3   0.0    1.7  2  RRM_occluded    Occluded RNA-recognition motif
     0.0088   16.0   0.0      0.018   15.0   0.0    1.5  1  ASF1_hist_chap  ASF1 like histone chaperone
  ------ inclusion threshold ------
      0.096   12.8   0.0        0.3   11.2   0.0    1.9  1  RRM_7           RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   1.9e-23   5.7e-20       1      70 []      49     119 ..      49     119 .. 0.98

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 1.9e-23
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +++g +p+d tee++ +l +++Gp++++k++ d +tg+skg+af+eF++ e  ++A+++lng++lg+r l+
  CCD24594.1  49 VYLGSIPYDQTEEQILDLCNNVGPVVNLKMMFDqQTGRSKGYAFIEFKDLETSASAIRNLNGYQLGSRFLR 119
                 799****************************************************************9875 PP

>> CSTF2_hinge  Hinge domain of cleavage stimulation factor subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.4   3.3e-11     1e-07       2      79 ..     154     232 ..     153     234 .. 0.89
   2 ?   -1.5   0.2       1.2   3.5e+03      41      57 ..     264     283 ..     252     285 .. 0.53

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 3.3e-11
  CSTF2_hinge   2 lPqgvqlppglsapd.aIsktLsslppeqllellsqlKalaqqnpsqarelLkqnpqLayAllqalllmglvdpdvvtk 79 
                  lP g++++ ++++p  +Is+ Ls+ ++e  l ll++lK+  ++n++ a el+++ pqL+  ++++ll  g+   d +++
   CCD24594.1 154 LPSGIDVNINMTTPAmMISSELSKKSKEDQLNLLQKLKEWTSENKDLAVELFNEYPQLSFVIAEILLTNGICKVDDLAQ 232
                  79999999966665527****************************************************9987766655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
  CSTF2_hinge  41 aqqnp...sqarelLkqnpq 57 
                  ++++p   +  +elL++  q
   CCD24594.1 264 LSNDPellETQKELLRKVLQ 283
                  34444333333444444444 PP

>> CSTF_C  Transcription termination and cleavage factor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.2   3.3e-10   9.8e-07       5      36 ..     274     305 ..     271     310 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 3.3e-10
      CSTF_C   5 kaeLlqQVLqLseeqIaaLPpdqRrsImiLrq 36 
                 ++eLl+ VLqLs+  Ia LP+++R+s    +q
  CCD24594.1 274 QKELLRKVLQLSDGEIAILPENERMSMWDIKQ 305
                 89***********************9766555 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.6e-07   0.00077       2      72 ..      47     122 ..      46     129 .. 0.86
   2 ?   -3.4   0.0         3   8.9e+03      21      42 ..     270     291 ..     269     294 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.6e-07
  RRM_occluded   2 rtisllplsDtvnkariralveekegeikkivLvpdheG......AivefkdekiagkasLaLdgsefegkklrcGt 72 
                   r++ l  ++   ++++i +l+++  g+++++ ++ d++       A++efkd ++ + a+  L+g+++  + lrcG 
    CCD24594.1  47 RIVYLGSIPYDQTEEQILDLCNNV-GPVVNLKMMFDQQTgrskgyAFIEFKDLETSASAIRNLNGYQLGSRFLRCGY 122
                   566666677777899999999999.99999999999875566667******************************95 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3
  RRM_occluded  21 lveekegeikkivLvpdheGAi 42 
                   l+e++++ ++k++  +d e Ai
    CCD24594.1 270 LLETQKELLRKVLQLSDGEIAI 291
                   5666667788888877777666 PP

>> ASF1_hist_chap  ASF1 like histone chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.1e-06     0.018      41     143 ..      47     154 ..      43     164 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 6.1e-06
                     EEEEESSS.SSGGGEEEEEEE.EEES--SEEEEEEEEE--.--GGGSSSGGGSE.EEEEE.EEEEETTEEEEEEEEEEEEEETT--CTTHHHS-- CS
  ASF1_hist_chap  41 kliyvgsa.eseeedqeLdsv.lvGPikvGvnkFvfeadp.pdvskipkedvlg.vtvil.ltasYkeqeFvrvGYyvnneyedeelkenppekp 130
                     +++y gs   +++e+q+Ld +  vGP+ + +++F  ++     ++ i+ +d+    ++i  l     +  F+r GY  nn+ +++ ++ n+++  
      CCD24594.1  47 RIVYLGSIpYDQTEEQILDLCnNVGPVVNLKMMFDQQTGRsKGYAFIEFKDLETsASAIRnLNGYQLGSRFLRCGYSSNNDISSTGISSNDQSMG 141
                     79*****8789999*****9846***********98876515567777777754144554155555699***************99999988877 PP

                     -GGGEEEEE-TTS CS
  ASF1_hist_chap 131 kieklvRniladk 143
                     ++++ +  +++d 
      CCD24594.1 142 NVDDGSNVLFSDL 154
                     7776666555555 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0    0.0001       0.3       1      65 [.      46     103 ..      46     121 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0001
       RRM_7   1 srkvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvka 65 
                 sr v++G +P D tee++ +  ++ g+v+ +            +++   kgy+f+ f+d ++ ++
  CCD24594.1  46 SRIVYLGSIPYDQTEEQILDLCNNVGPVV-NLKMMF------DQQTGRSKGYAFIEFKDLETSAS 103
                 789***********************985.432222......22223357999999988655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1254  (0.0699426); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2407.43
//
Query:       CCD24595.1  [L=252]
Description: hypothetical protein NDAI_0D02810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-06   26.0   9.3    8.4e-06   26.0   7.6    2.0  1  zf-rbx1       RING-H2 zinc finger domain
    2.1e-05   24.8  10.9    2.4e-05   24.6   4.5    2.9  2  zf-RING_2     Ring finger domain
     0.0031   17.7   6.4     0.0061   16.7   5.9    1.9  1  FANCL_C       FANCL C-terminal domain
     0.0097   15.6  10.8       0.01   15.6   2.1    3.1  2  zf-RING_11    RING-like zinc finger
  ------ inclusion threshold ------
      0.012   15.4   0.1      0.015   15.1   0.1    1.1  1  DUF2157       Predicted membrane protein (DUF2157)
      0.021   14.7   8.2       0.16   11.9   8.2    2.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
       0.03   14.2   0.7       0.03   14.2   0.7    3.2  3  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      0.037   13.7   0.3      0.037   13.7   0.3    2.9  3  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
      0.061   13.4   7.1      0.049   13.7   4.9    2.1  1  zf-RING_UBOX  RING-type zinc-finger
        3.7    7.7   9.9        8.4    6.5   7.3    2.7  2  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f


Domain annotation for each model (and alignments):
>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   7.6   4.7e-09   8.4e-06       2      55 .]     148     227 ..     147     227 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4.7e-09
     zf-rbx1   2 tCaiCrneleeacieckapgdee..........cpvvlGeCgHaFHlhCiskWlkt................rkvCPlcr 55 
                  C+iC + ++    + + +++++           +vv   C+H FH++Ci++W++t                   CPlcr
  CCD24595.1 148 CCIICLERVKVVPSTNDLEKQQNgteqttdmipSKVVKLPCEHYFHKCCIKDWFSTirkgmkssthsfaigpTYFCPLCR 227
                 799**99998554444444444444559999887777779****************999999999999998888899997 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.4     0.081   1.4e+02       2      11 ..     148     157 ..     140     165 .. 0.83
   2 !   24.6   4.5   1.3e-08   2.4e-05      14      44 .]     181     227 ..     173     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.081
   zf-RING_2   2 eCpICleels 11 
                  C ICle+++
  CCD24595.1 148 CCIICLERVK 157
                 5999*99875 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 1.3e-08
   zf-RING_2  14 dsvlllpCgHvfhreClerwlrssst................CPlCr 44 
                 ++v++lpC H fh+ C+++w+ + ++                CPlCr
  CCD24595.1 181 SKVVKLPCEHYFHKCCIKDWFSTIRKgmkssthsfaigptyfCPLCR 227
                 578899**************7555556678888*************9 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   5.9   3.4e-06    0.0061      16      62 ..     177     227 ..     145     235 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.4e-06
                 -----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--E..EE...-TTT- CS
     FANCL_C  16 gevpdisCdnekCnkkfHsaCLkeWlrslkesrqsfdvlf..Ge...CPyCk 62 
                 + +p ++     C + fH+ C+k+W+ +++++ +s + +f  G    CP C+
  CCD24595.1 177 DMIPSKVVK-LPCEHYFHKCCIKDWFSTIRKGMKSSTHSFaiGPtyfCPLCR 227
                 455555543.45***************9998777655554113233488876 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   1.6      0.03        53       2      10 ..     149     157 ..     147     161 .. 0.86
   2 !   15.6   2.1   5.7e-06      0.01      14      29 .]     182     197 ..     176     197 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.03
  zf-RING_11   2 CsICLeefk 10 
                 C ICLe +k
  CCD24595.1 149 CIICLERVK 157
                 889***997 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 5.7e-06
  zf-RING_11  14 alfilpCsHtFHfkCI 29 
                 +++ lpC H+FH  CI
  CCD24595.1 182 KVVKLPCEHYFHKCCI 197
                 46789**********9 PP

>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.1   8.4e-06     0.015      35      70 ..      31      66 ..       4      82 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.4e-06
     DUF2157 35 leallvlGalllglGlilfvAanWqglsrlvkflll 70
                ++++++lG +++ lGl++++ +   ++s+++k  +l
  CCD24595.1 31 QTLFFWLGGIFFFLGLFFIILQYHSEISNFIKGTML 66
                789***************************998776 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   8.2   8.8e-05      0.16       1      41 []     149     226 ..     149     226 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.8e-05
                 -TTT-S--SS-E........................E-TTS--B-CHHHHHHHHC..............TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn.......................elleCkHsfCskCirkilks..............rkkvkCPlC 41 
                 C+iCle +k                            l+C+H f++ Ci+ + ++                ++ CPlC
  CCD24595.1 149 CIICLERVKVVPstndlekqqngteqttdmipskvVKLPCEHYFHKCCIKDWFSTirkgmkssthsfaiGPTYFCPLC 226
                 9999999988778899999999999999999999999****************9998888887777764444448888 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   1.1      0.41   7.4e+02       2      10 ..     149     157 ..     148     162 .. 0.85
   2 ?   14.2   0.7   1.7e-05      0.03       7      31 ..     177     201 ..     176     206 .. 0.79
   3 ?   -2.2   2.2       2.2     4e+03      37      40 .]     223     226 ..     220     237 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.41
  zf-C3HC4_2   2 CpiCldmlk 10 
                 C iCl++ k
  CCD24595.1 149 CIICLERVK 157
                 99***9887 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.7e-05
  zf-C3HC4_2   7 dmlkdpsvvtpCgHvfCqkCilrsL 31 
                 dm+   +v  pC+H f++ Ci+ + 
  CCD24595.1 177 DMIPSKVVKLPCEHYFHKCCIKDWF 201
                 6666655555***********9986 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.2
  zf-C3HC4_2  37 CPlC 40 
                 CPlC
  CCD24595.1 223 CPLC 226
                 6666 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.7       2.7   4.8e+03       6      11 ..     148     153 ..     143     159 .. 0.53
   2 ?   13.7   0.3   2.1e-05     0.037      22      39 ..     186     203 ..     180     211 .. 0.85
   3 ?    2.2   0.6     0.077   1.4e+02       4      22 ..     220     238 ..     218     240 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.7
  Zn_ribbon_17   6 sCayCe 11 
                    C +C 
    CCD24595.1 148 CCIICL 153
                   344554 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.1e-05
  Zn_ribbon_17  22 gvCeHvlHasCarewfen 39 
                     CeH  H+ C+++wf++
    CCD24595.1 186 LPCEHYFHKCCIKDWFST 203
                   56**************97 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.077
  Zn_ribbon_17   4 lksCayCelavkgrvvlcg 22 
                   ++ C +C l +++   +c 
    CCD24595.1 220 TYFCPLCRLDLHRCQQICD 238
                   67799******99999985 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   4.9   2.8e-05     0.049       1      30 [.     149     206 ..     149     224 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
  zf-RING_UBOX   1 CpIClelft.....................dP..lv.lpCGHtFCreCl..w..elsk 30 
                   C ICle  +                      P  +v lpC H F++ C+  w  +++k
    CCD24595.1 149 CIICLERVKvvpstndlekqqngteqttdmIPskVVkLPCEHYFHKCCIkdWfsTIRK 206
                   88999988888888888899999999998878875558***********876553333 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   7.3    0.0047       8.4      47      67 ..     183     203 ..     126     232 .. 0.72
   2 ?    0.2   0.2      0.44   7.9e+02      22      34 ..     221     233 ..     202     241 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0047
                 EEEBTTS-EEEHHHHHHHHHH CS
  zf-ANAPC11  47 lvlGkckhnfhlhcilkwlet 67 
                 +v   c+h fh+ ci  w++t
  CCD24595.1 183 VVKLPCEHYFHKCCIKDWFST 203
                 44455*************987 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.44
                 SB-TTT-SBTTS- CS
  zf-ANAPC11  22 dvcGicrvsfdGt 34 
                   c +cr++ + +
  CCD24595.1 221 YFCPLCRLDLHRC 233
                 4555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1812.66
//
Query:       CCD24596.1  [L=234]
Description: hypothetical protein NDAI_0D02820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-16   60.8   0.1    2.5e-16   60.4   0.1    1.2  1  RNase_PH  3' exoribonuclease family, domain 1


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   1.4e-20   2.5e-16       4     132 .]      44     165 ..      41     165 .. 0.87

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 1.4e-20
                 EEEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CCEEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-CCGCCTCEEEE CS
    RNase_PH   4 slsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddaegaldveveyapfasgerrregrpsdeeielsrlleralrpsillekkpkstidi 102
                 slsi+ ++++++nGS ++e+++ ++++sv+gp+  r+s++ +  +g+++++ +   ++ ++      +++e +e+++ l  ++++++ lek+pks idi
  CCD24596.1  44 SLSIKSDIIENCNGSTLIESDEFSIVTSVYGPKSIRGSFT-S--QGTISIQLKNG-IV-EK-----YQTNELKEVASWLVGIFNSVVNLEKYPKSGIDI 132
                 789******************************9976666.5..45688888855.33.23.....3789***************************** PP

                 EEEEEECCC...S-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH 103 ditvlssdg...gslldalinaaslALadagip 132
                 ++ ++ ++    + l+   +++++lAL+d+gi+
  CCD24596.1 133 FVNLVIDKTndiSKLIPFIVMSTCLALVDSGIE 165
                 **98777666889999999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1773.68
//
Query:       CCD24597.1  [L=630]
Description: hypothetical protein NDAI_0D02830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-18   67.4   0.0    1.3e-18   67.4   0.0    2.8  3  Arrestin_N   Arrestin (or S-antigen), N-terminal domain
    1.3e-06   28.9   0.3    1.3e-06   28.9   0.3    3.5  3  Arrestin_C   Arrestin (or S-antigen), C-terminal domain
  ------ inclusion threshold ------
      0.027   14.4   0.9      0.065   13.2   0.9    1.7  1  Lipocalin_7  Lipocalin / cytosolic fatty-acid binding protein


Domain annotation for each model (and alignments):
>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   2.2e-22   1.3e-18       2     145 ..      44     199 ..      43     200 .. 0.88
   2 ?   -2.3   0.3       0.7   4.2e+03      56      82 ..     247     273 ..     232     283 .. 0.48
   3 ?   -0.5   0.2      0.19   1.1e+03      32      78 ..     516     562 ..     504     564 .. 0.60

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 2.2e-22
                 EEEES-SEEEEETT--EEEEEEE-CCCCTT.CEEEEEEEEEEEESSSSTTTT.....CCCEEEEEEEEEEEEESTSSSSS.SSSSHHHHHHHH-TTEEE CS
  Arrestin_N   2 tieldkrdevyhpgetvdGkvlleteelkkarkvkielsgkartgweeseva.....gktfrkdltlkkkqeyleteksllkskkdsqekLpkGehafp 95 
                  i+ld++++ ++p+e ++G+v+l+ ++++++ +++ +l  +++++ +    +     +k  +k+++l +++ + ++++ +  ++ d  + L kGeh+fp
  CCD24597.1  44 YIKLDEPHRLWKPNEYIKGEVILDIKKDLTNIALRFSLISEIKVKLKSTGPTtnkkiEKLVEKSSFLYGSEGIQQETNNNAIPHADPINGLTKGEHRFP 142
                 689****************************************99996554455666666777777777788888888888888999999********* PP

                 EEE---TT..S--SECSGEEEEEEEEEEEEECCC.....E--C.CCEEEEEEEEEEB CS
  Arrestin_N  96 FsfelPkn..lpsSfeGkaggvrYevkvtldrpw.....kidkkkkkvftVirkldl 145
                 F++++P+   + sS+++++g+++Y++++ l++       k+  ++++ f+V+ +ld+
  CCD24597.1 143 FRIKIPNGkhIFSSIKFEKGSIDYYLQCSLESLGinqheKPISRCEQGFSVLVPLDV 199
                 ******87558*******************99888888888888********99997 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.7
                 CEEEEEEEEEEEEESTSSSSS.SSSSH CS
  Arrestin_N  56 tfrkdltlkkkqeyleteksllkskkd 82 
                 t +k+++ +++ ++ +++k+l  ++++
  CCD24597.1 247 TNSKSSKSSSSSKVSKSSKELSLKTNE 273
                 233333333333333333333333333 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.19
                 .CEEEEEEEEEEEESSSSTTTTCCCEEEEEEEEEEEEESTSSSSS.S CS
  Arrestin_N  32 arkvkielsgkartgweesevagktfrkdltlkkkqeyleteksllk 78 
                 +++  ie+   ++ + +++ ++++t+ ++l+ +++ ey ++++ l +
  CCD24597.1 516 VTGMSIEIVVGTTKQPTQNITTQSTEASNLQTSTRNEYSSETNDLSE 562
                 33334444433333444444459999999999999999999887755 PP

>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   2.3    0.0092        55      18     113 ..      56     173 ..      45     279 .. 0.75
   2 !   28.9   0.3   2.2e-10   1.3e-06       2     130 ..     284     412 ..     283     414 .. 0.84
   3 ?   -2.7   1.3       1.2   7.4e+03      38      67 ..     465     495 ..     439     559 .. 0.49

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0092
                 TT--EEEEEEEEE-SSSEEEEEEEEEEEEEEEESS.....SEEEEEEEEEE.EEE---..................B-TTEE.EEEEEEE.----B--. CS
  Arrestin_C  18 pGetipvtvkidndskkkvkkikvslvqhvdvcafnr...snkkeknvvak.sdsvkv..................tsaakdkletevelqiPeeltp. 93 
                 p e i+ +v +d ++ ++   +++sl+  ++v+ ++     nkk ++ v+k s+  +                   +  +k++  + + ++iP + +  
  CCD24597.1  56 PNEYIKGEVILDIKKDLTNIALRFSLISEIKVKLKSTgptTNKKIEKLVEKsSFLYGSegiqqetnnnaiphadpiNGLTKGEHRFPFRIKIP-NGKHi 153
                 566666666666677777777777777777777776666666666666666444444344444444444444444466666666666777777.55555 PP

                 .---S---EEEEEEEEEEEEE CS
  Arrestin_C  94 .ssarnvelikvsYklkvklt 113
                  ss+ + e  +++Y+l+ +l+
  CCD24597.1 154 fSSI-KFEKGSIDYYLQCSLE 173
                 5554.7777777888777665 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 2.2e-10
                 ---EEEEEEES-SEEETT--EEEEEEEE.E-SSSEEEEEEEEEEEEEEEESS..SEEEEEEEEEEEEE---B-TTEE.EEEEEEE.----B-----S-- CS
  Arrestin_C   2 dgkvsleaslpkkgyvpGetipvtvkid.ndskkkvkkikvslvqhvdvcafnrsnkkeknvvaksdsvkvtsaakdkletevelqiPeeltpssarnv 99 
                 d++v++++ + k+gy+ G+ ip+++ i+  +       + ++lv+ +++  +n s   +++ + +++ + +  +++ + + ++ l++P ++ ++ +  +
  CCD24597.1 284 DKTVQISVDIGKSGYILGDLIPIHIAIQhYKECHHSAGLILTLVRICRIGNQNTSMETFRKDICQNIAPLYIDPETLQSNSTLYLKVPLDTLSTFTSFN 382
                 679*************************546668888999999999999999887778888888866666677777778889******9999988889* PP

                 -EEEEEEEEEEEEEEESSEEEEEEEEEEEEE CS
  Arrestin_C 100 elikvsYklkvkltlsgsggelslelPivlg 130
                 ++ + +Y+++v ++ls +++ +  e+  ++g
  CCD24597.1 383 KFFSFQYYVEVMVNLS-RKNMVYTESNRIIG 412
                 ****************.44566666666665 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.2
                 EEEEEEEEEEEEESS..SEEEEEEEEEE.EE CS
  Arrestin_C  38 kikvslvqhvdvcafnrsnkkeknvvak.sd 67 
                 +i+ ++ + v+ + ++++n++++   ++ ++
  CCD24597.1 465 HIQKKVLKIVTQTENGKNNGSDNILNNQnDI 495
                 4444444444444444433333222222222 PP

>> Lipocalin_7  Lipocalin / cytosolic fatty-acid binding protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.9   1.1e-05     0.065      44      92 ..     434     483 ..     398     523 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.1e-05
                  ETTEEEEE.EEETTTEEEEEEEETTSEEEEEETTSCEEEEEEEEETTEEE CS
  Lipocalin_7  44 dgqnftws.qsysgghsltnkftigkeseiqtlggkkfkatvkmeggkvv 92 
                  d +n + s  + + g+++ nk t g e +i+ +  k +k   + e gk  
   CCD24597.1 434 DNNNASTSnGNNNNGNTIRNKVTQGVENNINHIQKKVLKIVTQTENGKNN 483
                  44444444146789*********************************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1853  (0.103352); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4791.57
//
Query:       CCD24598.1  [L=426]
Description: hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-44  150.1   0.0    2.7e-21   75.2   0.1    2.3  2  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    0.00013   22.0   0.1       0.34   11.0   0.0    2.8  2  RRM_7         RNA recognition motif
     0.0031   17.5   0.1       0.96    9.5   0.0    2.4  2  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
  ------ inclusion threshold ------
      0.017   15.1   0.0       0.72    9.9   0.0    2.3  2  DbpA          DbpA RNA binding domain
      0.041   13.5   0.0          2    8.0   0.0    2.3  2  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
      0.085   12.7   0.0        3.1    7.7   0.0    2.3  2  RRM_occluded  Occluded RNA-recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   4.6e-24   1.4e-20       1      69 [.     173     242 ..     173     243 .. 0.99
   2 !   75.2   0.1   8.9e-25   2.7e-21       1      70 []     272     342 ..     272     342 .. 0.98

  Alignments for each domain:
  == domain 1  score: 72.9 bits;  conditional E-value: 4.6e-24
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fVg L++++++e Lk+ F+++G+++ ++++++  t++s+g+++V+Fe+k+ AekA+++++gk+++gr++
  CCD24598.1 173 IFVGRLSWSIDDEWLKKEFEHIGGVVGARVIYErGTDRSRGYGYVDFEDKSYAEKAIQEMQGKEIDGRPI 242
                 8*******************************************************************98 PP

  == domain 2  score: 75.2 bits;  conditional E-value: 8.9e-25
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 lf+gnL++++++++++e Fsk+G+i s+++++  et+++kgf++V+F + edA+kAle l+g+ +++r ++
  CCD24598.1 272 LFLGNLSFNADKDNIYETFSKYGEIISVRIPTHpETEQPKGFGYVQFSNIEDAKKALEGLQGEYIDNRAVR 342
                 89******************************************************************875 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0012       3.4       4      66 ..     173     228 ..     171     240 .. 0.68
   2 !   11.0   0.0   0.00012      0.34       3      52 ..     271     313 ..     269     337 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaL 66 
                 +FvG l + i++e lk+ f++ g v+      a+   ++ +     +gy ++ fed++  ++ 
  CCD24598.1 173 IFVGRLSWSIDDEWLKKEFEHIGGVVG-----ARVIYERGT--DRSRGYGYVDFEDKSYAEKA 228
                 9*******************9998763.....222222221..22357777777776655555 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00012
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkv.lvdwPkkaeskkkaaenskaakgy 52 
                  +F+G l  + +++++++tf+++g++ +v  P ++e+++ +        g+
  CCD24598.1 271 TLFLGNLSFNADKDNIYETFSKYGEIiSVRIPTHPETEQPK--------GF 313
                 68**********************96369999998775442........44 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0048        14      21      52 ..     191     228 ..     191     229 .. 0.85
   2 !    9.5   0.0   0.00032      0.96      15      53 .]     284     328 ..     280     328 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0048
  Nup35_RRM_2  21 FasfGeIvk...hyvp...kevsvmyvkfesekdaekA 52 
                  F+++G +v    +y +   +++ + yv fe++  aekA
   CCD24598.1 191 FEHIGGVVGarvIYERgtdRSRGYGYVDFEDKSYAEKA 228
                  78888888866666668888999**************9 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00032
  Nup35_RRM_2  15 elVlehFasfGeIvkhyvp......kevsvmyvkfesekdaekAL 53 
                  + ++e F  +GeI    +p      + + + yv+f +  da+kAL
   CCD24598.1 284 DNIYETFSKYGEIISVRIPthpeteQPKGFGYVQFSNIEDAKKAL 328
                  567888999******99999999997799***************8 PP

>> DbpA  DbpA RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00024      0.72      47      70 ..     221     244 ..     216     246 .. 0.93
   2 ?    2.7   0.0     0.043   1.3e+02      49      70 ..     322     343 ..     318     344 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00024
                 -TT-HHHHHHHHTT--SSS----E CS
        DbpA  47 pkekaeevlkalkkkkikGrkvrv 70 
                 +k++ae++++ +++k+i+Gr+++v
  CCD24598.1 221 DKSYAEKAIQEMQGKEIDGRPINV 244
                 5899******************99 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.043
                 T-HHHHHHHHTT--SSS----E CS
        DbpA  49 ekaeevlkalkkkkikGrkvrv 70 
                 e+a+++l+ l+++ i++r vr+
  CCD24598.1 322 EDAKKALEGLQGEYIDNRAVRL 343
                 689***************9986 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00068         2      65     100 ..     213     248 ..     209     263 .. 0.89
   2 ?    2.9   0.0     0.026        78      41      95 ..     283     342 ..     272     352 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00068
       RRM_5  65 etalvqmgdasaveravqHLnnaklfgkrlevalSK 100
                 ++  v+  d s +e+a+q ++++++ g++++v +S 
  CCD24598.1 213 GYGYVDFEDKSYAEKAIQEMQGKEIDGRPINVDMST 248
                 67789999***********************99985 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.026
       RRM_5  41 ldklFnlfclYgnvervkf.....lktkketalvqmgdasaveravqHLnnaklfgkrle 95 
                  d+++  f+ Yg++  v++       + k+   vq ++  ++++a++ L+++ + ++ ++
  CCD24598.1 283 KDNIYETFSKYGEIISVRIpthpeTEQPKGFGYVQFSNIEDAKKALEGLQGEYIDNRAVR 342
                 5789999********999933222234567788999999999999999988877555555 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0     0.001       3.1      43      70 ..     217     244 ..     213     247 .. 0.94
   2 ?    2.3   0.0      0.05   1.5e+02      42      69 ..     315     342 ..     270     344 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.001
  RRM_occluded  43 vefkdekiagkasLaLdgsefegkklrc 70 
                   v f+d++ a ka+ +++g+e++g+ +++
    CCD24598.1 217 VDFEDKSYAEKAIQEMQGKEIDGRPINV 244
                   89**********************9986 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.05
  RRM_occluded  42 ivefkdekiagkasLaLdgsefegkklr 69 
                    v+f++ ++a ka+  L+g  ++++ +r
    CCD24598.1 315 YVQFSNIEDAKKALEGLQGEYIDNRAVR 342
                   699********************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2614  (0.145797); expected 358.6 (0.02)
Passed bias filter:                      921  (0.0513693); expected 358.6 (0.02)
Passed Vit filter:                       602  (0.0335769); expected 17.9 (0.001)
Passed Fwd filter:                       249  (0.0138881); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 2.60u 0.40s 00:00:03.00 Elapsed: 00:00:00.62
# Mc/sec: 2056.39
//
Query:       CCD24599.1  [L=405]
Description: hypothetical protein NDAI_0D02850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-43  145.9   0.0    1.6e-42  145.0   0.0    1.5  1  AAA              ATPase family associated with various cellul
    3.1e-14   52.5   0.4      9e-14   51.0   0.0    2.0  1  AAA_lid_3        AAA+ lid domain
    1.2e-07   31.6   0.9    2.8e-07   30.4   0.9    1.7  1  Prot_ATP_ID_OB   Proteasomal ATPase OB C-terminal domain
    1.3e-06   28.7   0.0    2.5e-06   27.7   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
    1.4e-06   28.4   0.0    7.7e-06   25.9   0.0    2.4  1  AAA_5            AAA domain (dynein-related subfamily)
    2.1e-05   25.0   0.1    0.00032   21.1   0.0    2.4  2  AAA_16           AAA ATPase domain
    3.3e-05   24.2   0.2     0.0094   16.2   0.0    2.5  2  AAA_22           AAA domain
    9.3e-05   22.2   0.0    0.00019   21.2   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0013   19.3   0.4      0.023   15.2   0.0    2.7  3  AAA_18           AAA domain
     0.0015   18.3   0.0     0.0025   17.6   0.0    1.3  1  IstB_IS21        IstB-like ATP binding protein
     0.0022   18.2   0.0     0.0046   17.1   0.0    1.6  1  AAA_33           AAA domain
     0.0042   17.3   0.0     0.0085   16.4   0.0    1.5  1  AAA_28           AAA domain
      0.007   16.2   0.0      0.018   14.9   0.0    1.7  1  AAA_3            ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.011   15.1   0.2      0.028   13.8   0.0    1.7  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.011   14.9   0.0      0.028   13.6   0.0    1.6  1  TIP49            TIP49 P-loop domain
      0.019   15.3   0.2      0.038   14.3   0.2    1.5  1  DUF2072          Zn-ribbon containing protein
       0.02   14.9   0.0      0.039   13.9   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.022   14.8   0.0      0.049   13.7   0.0    1.6  1  AAA_14           AAA domain
      0.023   14.2   0.0      0.077   12.4   0.0    1.8  2  PhoH             PhoH-like protein
      0.029   14.1   0.0       0.17   11.6   0.0    2.2  3  Sigma54_activat  Sigma-54 interaction domain
      0.041   14.3   0.0      0.095   13.1   0.0    1.7  1  RNA_helicase     RNA helicase
      0.048   14.0   0.1       0.65   10.3   0.1    2.3  2  AAA_19           AAA domain
      0.052   13.3   0.0       0.19   11.4   0.0    1.9  2  AAA_24           AAA domain
      0.054   13.1   0.0       0.14   11.7   0.0    1.6  1  AAA_25           AAA domain
      0.069   12.3   0.0       0.14   11.3   0.0    1.5  1  DUF815           Protein of unknown function (DUF815)
      0.082   12.4   0.0       0.14   11.7   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
      0.091   12.0   0.0       0.25   10.6   0.0    1.8  1  Zeta_toxin       Zeta toxin
       0.11   11.6   0.0       0.18   10.9   0.0    1.2  1  Parvo_NS1        Parvovirus non-structural protein NS1
       0.13   11.9   0.0       0.32   10.7   0.0    1.6  1  AAA_30           AAA domain
       0.15   12.0   0.0       0.43   10.5   0.0    1.7  2  NACHT            NACHT domain
       0.23   11.7   3.1        0.4   10.9   3.1    1.3  1  ATG16            Autophagy protein 16 (ATG16)


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0   0.0   2.8e-45   1.6e-42       1     131 [.     184     317 ..     184     318 .. 0.97

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 2.8e-45
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH....TTCCCHHHHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr....sgseseeeervvnqLlteldg 95 
                 v+lyGppGtGKTlla+ava++++ +f+++sg+el++ky+ge+++ +relf  a+++a psi+f+DEid++++sr    sg+ ++e +r++ +Ll++ldg
  CCD24599.1 184 VILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMARQHA-PSIIFMDEIDSIGSSRveggSGGGDSEVQRTMLELLNQLDG 281
                 79******************************************************9.******************9999999**************** PP

                 TTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  96 vkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 ++++++ + +i+atnr d ldpallr gR+drkie++
  CCD24599.1 282 FETSKD-IKIIMATNRLDILDPALLRpGRIDRKIEFP 317
                 ***855.***************************997 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   1.6e-16     9e-14       2      44 ..     341     383 ..     340     384 .. 0.97

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 1.6e-16
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 ++l ++Ae+++G+SGAD + +c eA++ Alr+ + ++t+edfe
  CCD24599.1 341 INLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFE 383
                 799***************************************8 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.9   4.8e-10   2.8e-07       1      56 [.      71     125 ..      71     126 .. 0.98

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 4.8e-10
                     EEEEEEE-TTSSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE CS
  Prot_ATP_ID_OB   1 VatVsEvlddteraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkL 56 
                     V++V +v+ d ++++Vk     +++v +a+ ++ + L+p+ +V + +d+++ +++L
      CCD24599.1  71 VGEVIKVVSD-KKVLVKVQPEGKYIVDVAKDIDIKNLKPSQRVCLKSDSYMLHKVL 125
                     89********.*****************************************9998 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   4.3e-09   2.5e-06       7     104 ..     185     277 ..     180     297 .. 0.88

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 4.3e-09
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..EEEEETGGG----.---------HHHHHHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..ivllDEidKihpk.essgadvSregVqrdLLqi 102
                 +l gp g+Gkt+la+a+a + ++    k+ir+   el +    + + +     ++  v a ++   i+++DEid i ++  + g+     +Vqr +L +
  CCD24599.1 185 ILYGPPGTGKTLLARAVAHHTDC----KFIRVSGAELVQ----KYIGEGSRMVRELFVMARQHApsIIFMDEIDSIGSSrVEGGSGGGDSEVQRTMLEL 275
                 5679******************8....************....88888888999999999999999************988888888899********9 PP

                 HH CS
       AAA_2 103 le 104
                 l 
  CCD24599.1 276 LN 277
                 96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.3e-08   7.7e-06       1      80 [.     183     255 ..     183     306 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 1.3e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGGG--HH CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEveraese 80 
                 +v+L GppGtgK+ la+ +a+ + +++  v +      ++l++++   +++ ++v   +v a +  ++i+++DE++ + s+
  CCD24599.1 183 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSG------AELVQKYI--GEGSRMVRELFVMARQhAPSIIFMDEIDSIGSS 255
                 59************************998876......56999999..45555555555544445999*******988765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   5.6e-07   0.00032      15      47 ..     172     204 ..     168     221 .. 0.83
   2 ?    0.7   0.0       1.1   6.2e+02     124     149 ..     230     254 ..     225     280 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 5.6e-07
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellra 47 
                 ++e++   +p  v+l+G++G+GK+ l+r+++++
  CCD24599.1 172 LFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 204
                 56777778999*******************975 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.1
      AAA_16 124 krllallsrderplvlvlDdlqwade 149
                 ++l++ +++ + p ++++D+++ + +
  CCD24599.1 230 RELFVMARQ-HAPSIIFMDEIDSIGS 254
                 455567777.778********95544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.6e-05    0.0094       8      29 ..     184     205 ..     179     218 .. 0.84
   2 ?    5.6   0.0     0.031        18      80     128 ..     230     293 ..     208     301 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.6e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++++G++GtGKT+l+r +++  
  CCD24599.1 184 VILYGPPGTGKTLLARAVAHHT 205
                 689**************99876 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.031
      AAA_22  80 ealeqalraravielliiDEaqhlr..s.............eealeeLrsllnl.srkgvqliLv 128
                 + l   +r++a  +++  DE++ +   +              ++le L +l  +  +k++++i++
  CCD24599.1 230 RELFVMARQHAP-SIIFMDEIDSIGssRveggsgggdsevqRTMLELLNQLDGFeTSKDIKIIMA 293
                 444444455555.9**********87615566678888888999999988888899999999986 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.4e-07   0.00019      35      96 ..     183     252 ..     157     258 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.4e-07
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvleka..gd...laa...lltnleekdvlfideihrl 96 
                  v+lyGpPG Gkt la+ +a+  + k+   sg  l ++  g+   ++    ++++ ++  ++f+dei  +
  CCD24599.1 183 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKyiGEgsrMVRelfVMARQHAPSIIFMDEIDSI 252
                 599**********************987777765543323331113331112233344578999998765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       8.9   5.1e+03     122     122 ..      55      55 ..      28     125 .. 0.63
   2 !   15.2   0.0     4e-05     0.023       1      25 [.     184     214 ..     184     249 .. 0.80
   3 ?    0.9   0.0         1     6e+02      18      44 ..     346     374 ..     325     399 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 8.9
      AAA_18 122 e 122
                 +
  CCD24599.1  55 R 55 
                 1 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 4e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf......g 25 
                 ++l G+pG+GKt la++++ ++ +      g
  CCD24599.1 184 VILYGPPGTGKTLLARAVAHHTDCkfirvsG 214
                 79****************9998776665552 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 1
      AAA_18  18 Lskrl.gf.gvnlrdvakenglllevdpe 44 
                 +++++ g+ g  ++ v++e g++  ++  
  CCD24599.1 346 VAEKMnGCsGADVKGVCTEAGMYALRERR 374
                 23333244555555555555555444444 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.3e-06    0.0025      44      71 ..     178     205 ..     161     249 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.3e-06
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgvea 71 
                 i++ ++++l Gp+G+GK+ la a+++++
  CCD24599.1 178 IAQPKGVILYGPPGTGKTLLARAVAHHT 205
                 667789*****************99865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   7.9e-06    0.0046       2      39 ..     184     223 ..     184     252 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 7.9e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfg 39 
                 v+l G+pG+GK+ la+ ++ +++  ++++s  +l +++ g
  CCD24599.1 184 VILYGPPGTGKTLLARAVAHHTDckFIRVSGAELVQKYIG 223
                 7899*************99777788999988777666655 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.5e-05    0.0085       2      39 ..     184     226 ..     183     246 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.5e-05
      AAA_28   2 ivitGgestGKTtlleaLaar....gypvv.pEaareileekl 39 
                 +++ G+++tGKT l++a a +     ++v  +E + +++ e++
  CCD24599.1 184 VILYGPPGTGKTLLARAVAHHtdckFIRVSgAELVQKYIGEGS 226
                 789****************998675566667777777776655 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.2e-05     0.018       2      31 ..     184     213 ..     183     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.2e-05
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriq 31 
                 v+l g PG++ktll++a+a++ d++f r+ 
  CCD24599.1 184 VILYGPPGTGKTLLARAVAHHTDCKFIRVS 213
                 7899***********************995 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.9e-05     0.028      24      42 ..     183     201 ..     174     206 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.9e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrl 42 
                    ++l+GppG+GKt+la+++
    CCD24599.1 183 GVILYGPPGTGKTLLARAV 201
                   689*************987 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   4.9e-05     0.028      51      90 ..     182     219 ..     171     233 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevys 90 
                 ++v+l Gp+gtGkt la a++++  +d +f+ +sg+e+ +
  CCD24599.1 182 KGVILYGPPGTGKTLLARAVAHH--TDCKFIRVSGAELVQ 219
                 89*******************97..5799*****999865 PP

>> DUF2072  Zn-ribbon containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   6.5e-05     0.038      73     128 ..      38      98 ..       4     102 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 6.5e-05
     DUF2072  73 kkekekaekekeeedrvesvr.....ilepGsYelNlekLlerdelvmalkeegkYvvdlp 128
                  + ++ + ++++ +d+v  ++     + epGsY   + k+++ + ++++++ egkY+vd++
  CCD24599.1  38 ENLRRLEAQRNALNDKVRFIKdelrlLQEPGSYVGEVIKVVSDKKVLVKVQPEGKYIVDVA 98 
                 22334444555555665444322223458******************************97 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.8e-05     0.039      19      59 ..     181     221 ..     153     234 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.8e-05
                 TEEEEEEESTTSSHHHHHHHHHHHTT------TTTTSEEEE CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgveevkSPTFtlveeY 59 
                  + ++L+G+ G+GKT l+r++a++ +++ ++     lv++Y
  CCD24599.1 181 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 221
                 4459********************99995555555677776 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   8.4e-05     0.049       3      76 ..     182     252 ..     180     295 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 8.4e-05
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 k +++ G+  +GKT l++ ++++      +++ ++  +  +k + + +++ ++++ +++++  +++f+DEi  +
  CCD24599.1 182 KGVILYGPPGTGKTLLARAVAHHTD---CKFIRVSGAELVQKYIGEGSRMVRELFVMARQHAPSIIFMDEIDSI 252
                 5689***************997777...8999999888777666654434433333334468899******877 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00013     0.077      19      41 ..     181     203 ..     171     211 .. 0.85
   2 ?   -2.5   0.0         5   2.9e+03      76     114 ..     268     306 ..     261     311 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
                 -SEEEEE--TTSSTTHHHHHHHH CS
        PhoH  19 ndivfaiGpaGtGKtylavalav 41 
                  + v+  Gp GtGKt+la a+a 
  CCD24599.1 181 PKGVILYGPPGTGKTLLARAVAH 203
                 566899************99986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5
                 --TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGT CS
        PhoH  76 vdpylrplydaLkdllgaekvekllekgkievaplaymR 114
                 v+  +  l ++L+ +  ++ ++ ++ ++++ +++ a +R
  CCD24599.1 268 VQRTMLELLNQLDGFETSKDIKIIMATNRLDILDPALLR 306
                 556666778888888888889999999999999988888 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00029      0.17      21      61 ..     180     217 ..     167     233 .. 0.79
   2 ?   -2.1   0.0       4.8   2.8e+03      95     105 ..     242     252 ..     234     256 .. 0.80
   3 ?   -2.0   0.0       4.5   2.6e+03     131     143 ..     284     296 ..     262     298 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00029
                      SSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS CS
  Sigma54_activat  21 tdlsvlitGesGtGKellaraiheaskrkekpfvavncaai 61 
                      ++  v++ G  GtGK+llara+ +++   + +f++v  a++
       CCD24599.1 180 QPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAEL 217
                      556799**************996554...355666666655 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4.8
                      SEEEEETGGGS CS
  Sigma54_activat  95 GtlfLDeigel 105
                      +++f+Dei ++
       CCD24599.1 242 SIIFMDEIDSI 252
                      689*****986 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.5
                      EE--EEEEEEESS CS
  Sigma54_activat 131 ikvdvriiaatne 143
                      ++ d++ii+atn+
       CCD24599.1 284 TSKDIKIIMATNR 296
                      5668999999986 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00016     0.095       1      23 [.     184     206 ..     184     258 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00016
  RNA_helicase   1 iwlyGpsgeGKStlakeLakall 23 
                   ++lyGp+g+GK++la+ +a++  
    CCD24599.1 184 VILYGPPGTGKTLLARAVAHHTD 206
                   689*************9555433 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1    0.0011      0.65       9      33 ..     180     204 ..     175     218 .. 0.79
   2 ?    0.7   0.0       1.1   6.1e+02      15      53 ..     257     296 ..     251     297 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0011
      AAA_19   9 kekvllvtaGpGtGKTrvlkhival 33 
                 + k +++ ++pGtGKT + +++ ++
  CCD24599.1 180 QPKGVILYGPPGTGKTLLARAVAHH 204
                 567789**********877666555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 1.1
      AAA_19  15 vtaGpGtGKTrvlkhivallvelggvkp.eeillvaftgr 53 
                 v +G G G ++v +++++ll++l g +  ++i ++  t+r
  CCD24599.1 257 VEGGSGGGDSEVQRTMLELLNQLDGFETsKDIKIIMATNR 296
                 789*****************99988765366777766665 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00033      0.19       5      22 ..     184     201 ..     180     210 .. 0.85
   2 ?   -2.0   0.0       4.2   2.4e+03      89     124 ..     250     287 ..     241     296 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00033
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +++yGp+g+GKT la+  
  CCD24599.1 184 VILYGPPGTGKTLLARAV 201
                 89***********99865 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.2
      AAA_24  89 nekaeskedkgdgkGygelaeefrrllkklqelrk..n 124
                 +++++s+ ++g+g G +e+++ + +ll++l+ +    +
  CCD24599.1 250 DSIGSSRVEGGSGGGDSEVQRTMLELLNQLDGFETskD 287
                 56666777777777889999999999999987765554 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00024      0.14      36      56 ..     184     204 ..     178     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00024
      AAA_25  36 allaGapgtGKttlaldlala 56 
                 ++l+G+pgtGKt la  +a++
  CCD24599.1 184 VILYGPPGTGKTLLARAVAHH 204
                 69*************998887 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00024      0.14      54     115 ..     182     248 ..     132     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00024
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeegLrl..ievekedlkelpklvellr...erperfilfvDD 115
                 + v+L+G  GtGK  l +a+ +++  + +r+   e+ ++ + e +++v++l    +++   i+f+D 
  CCD24599.1 182 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVsgAELVQKYIGEGSRMVRELFvmaRQHAPSIIFMDE 248
                 679***********************99998556888999999888888764222566667999986 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00024      0.14      30      58 ..     178     206 ..     169     251 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00024
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkld 58 
                 +++ k v+l+Gp GtGKt++++ + ++ d
  CCD24599.1 178 IAQPKGVILYGPPGTGKTLLARAVAHHTD 206
                 678899***************99988877 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00044      0.25      14      51 ..     179     214 ..     171     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00044
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerqgnvvrldp 51 
                  +Pk ++l G pG GK+ la++++  +  + +++r+++
  CCD24599.1 179 AQPKGVILYGPPGTGKTLLARAVAHHT--DCKFIRVSG 214
                 58*********************9987..677777765 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0003      0.18     117     138 ..     184     205 ..     179     208 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0003
   Parvo_NS1 117 vwfyGpantGktnlaeaIakav 138
                 v +yGp+ tGkt la+a a+ +
  CCD24599.1 184 VILYGPPGTGKTLLARAVAHHT 205
                 789****************976 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00056      0.32      21      43 ..     184     206 ..     172     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00056
      AAA_30  21 avltGpAGtGKttalkalreawe 43 
                 ++l Gp+GtGKt + +a++++ +
  CCD24599.1 184 VILYGPPGTGKTLLARAVAHHTD 206
                 7899**********999988765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00074      0.43       3      22 ..     184     203 ..     182     210 .. 0.90
   2 ?   -2.4   0.0         7     4e+03      67     113 ..     227     276 ..     212     285 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00074
                 EEEEC-TTTCHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklal 22 
                 vil G++G GKT L++ +a+
  CCD24599.1 184 VILYGPPGTGKTLLARAVAH 203
                 89**************9987 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7
                 SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH.............HHHHH CS
       NACHT  67 apvsevwavllelperlLlilDglDelvtdlgq....kekqpvrtlLseli 113
                 + v+e   v++++     + +D +D + +   +     +  +v++ + el+
  CCD24599.1 227 RMVRE-LFVMARQHAPSIIFMDEIDSIGSSRVEggsgGGDSEVQRTMLELL 276
                 45555.334444555555567888888876655666644444455454554 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.1   0.00069       0.4     109     148 ..      24      63 ..      22      66 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00069
       ATG16 109 eelqkleeklkedeerlaeleaeraaletklkdreeelre 148
                 +++q+ e k+++++e+l++lea+r+al++k++  ++elr 
  CCD24599.1  24 QQIQETELKIRSKTENLRRLEAQRNALNDKVRFIKDELRL 63 
                 68999***************************99999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                       134  (0.00747392); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 3101.72
//
Query:       CCD24600.1  [L=955]
Description: hypothetical protein NDAI_0D02860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-49  168.1   1.3    3.3e-49  167.4   1.3    1.3  1  MIF4G     MIF4G domain
    4.7e-22   78.0   1.5    4.7e-22   78.0   1.5    2.4  2  eIF_4G1   Eukaryotic translation initiation factor 4G1
  ------ inclusion threshold ------
       0.21   11.2   0.0       0.35   10.4   0.0    1.2  1  SseC      Secretion system effector C (SseC) like family


Domain annotation for each model (and alignments):
>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.4   1.3   5.5e-53   3.3e-49       2     212 .]     610     853 ..     609     853 .. 0.99

  Alignments for each domain:
  == domain 1  score: 167.4 bits;  conditional E-value: 5.5e-53
                 HHHHHHHHCHTTTTHHHHHHHHHHHHHCS....CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSH..............HHHHHHHHHHHHHH CS
       MIF4G   2 kkvkgilnklskenfevlikqllklamdd....dknelkevielifekaveepsfsplyarlcgklnsrfq..............qnFrikllnklqee 82 
                  k+k++lnkl+ e+f+++  ++l +  ++    ++++l+ vie+if ka++ep++s++ya+lcgk++++++              + + ++l+++++ e
  CCD24600.1 610 SKMKSLLNKLTLEKFDTISNDILAITEQSkwekNGETLNLVIEQIFLKACDEPHWSSMYAQLCGKVVKELDpeikdetnegktgpKLVLHYLVARCHTE 708
                 589************************************************************************************************ PP

                 HHHHC...............-S-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGCCCCSCCHSCHHHHHHHHHHHHHHHHHHHC CS
       MIF4G  83 fekry...............eleneleenedgnrrrrlglvrflgelfklkmltskilldclkellssltketaddppqdleeieilltllttigktle 166
                 f+k +               e+++ +++++++++rr lglvrf+g+l++l++lt k++++c+++l+++l +      ++++e +e +++ll+t+gk++e
  CCD24600.1 709 FQKGWtdklptnedgsplepEMMSDEYYQAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLIKDLSD------NPSEEILESVVELLMTVGKQFE 801
                 ***********************************************************************......78******************** PP

                 ........CCHHHHHHHHHHHHHHHHHHHCCHCSSSSHHHHHHHHHHHHHHHTT CS
       MIF4G 167 ........nnekakkeldqffkriqkiledatrqelssrirfmlkdlielkknk 212
                         ++ + + +ld +f+ iq+ +    + ++ssri+f l d+ el+++k
  CCD24600.1 802 hdtfragnATLEGCVLLDSLFQIIQNLIDT--DTQISSRIKFKLLDVKELREKK 853
                 *****************************9..6******************986 PP

>> eIF_4G1  Eukaryotic translation initiation factor 4G1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.0       1.5   9.1e+03      25      54 ..      32      68 ..       9      70 .. 0.51
   2 !   78.0   1.5   7.8e-26   4.7e-22       6      70 .]     383     447 ..     378     447 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.5
     eIF_4G1 25 iediysvkYPegiesPdpalnkeakk.......yrYd 54
                  + ++ +YP +  +  +++n+ + +       y Y+
  CCD24600.1 32 TTSNTTNSYPTKSVNSYQKYNQVNGPgneqqptYSYG 68
                4555667788765544444443332233333347776 PP

  == domain 2  score: 78.0 bits;  conditional E-value: 7.8e-26
     eIF_4G1   6 aeeeptisaflesLksArpiediysvkYPegiesPdpalnkeakkyrYdpdFLLQFkdvvkekpd 70 
                 +  ++t++++le+Lk++ pi+diy+++Y+++++sPd +++++++ky+Y+p+FLLQFkd+++++pd
  CCD24600.1 383 SMPSMTFTELLEKLKKVDPIKDIYAFNYSKDVTSPDIKYKSTHVKYTYGPEFLLQFKDKINVTPD 447
                 56789*********************************************************997 PP

>> SseC  Secretion system effector C (SseC) like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   5.9e-05      0.35     177     299 ..     761     880 ..     755     894 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 5.9e-05
        SseC 177 aigkaikkaaekagkevaeqvskqvlnelakkatkvakavkegvvasavakalikavvvaeggngiaqGainiqrAklqkkaaqlqAdtkllravleql 275
                  +gk++ +   +++k+++++ s+++l+++ ++ ++v+k+ +  + ++a   +l  ++v +++  +i q+ i+++  ++ + ++   +d+k+lr    ++
  CCD24600.1 761 LTGKMMFECFRRLIKDLSDNPSEEILESVVELLMTVGKQFEHDT-FRAGNATL-EGCVLLDSLFQIIQNLIDTD-TQISSRIKFKLLDVKELREKKHWN 856
                 5899999******************************9999988.66655555.55559*************87.5999******************** PP

        SseC 276 qkvldeaaeeikellesiqellks 299
                  + ++   ++i+++ +  +++ + 
  CCD24600.1 857 SDKQESGPKTIQQIHQEEEKARQL 880
                 ************999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (955 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1733  (0.096659); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.25s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 6500.93
//
Query:       CCD24601.1  [L=287]
Description: hypothetical protein NDAI_0D02870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-66  223.2   0.3    4.5e-66  222.2   0.0    1.6  2  TYW3      Methyltransferase TYW3
  ------ inclusion threshold ------
      0.047   13.3   0.5      0.066   12.8   0.5    1.2  1  DUF2347   Uncharacterized conserved protein (DUF2347)
      0.099   12.5  13.6       0.16   11.8  13.6    1.2  1  MAT1      CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TYW3  Methyltransferase TYW3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.2   0.0   7.6e-70   4.5e-66       1     212 [.       9     222 ..       9     223 .. 0.94
   2 ?   -2.1   0.3      0.34     2e+03     114     116 ..     254     256 ..     227     283 .. 0.51

  Alignments for each domain:
  == domain 1  score: 222.2 bits;  conditional E-value: 7.6e-70
                 HHHHHHHHHH....HHHHHCCHC-GGGHHHHHHHHC-SSEEEEEEES-EEEEE............EESSTT-STT-EEEEEESS---HHHHHHHHCS-- CS
        TYW3   1 erKakiLeeLsvpdtdkspkGsvDekirelideinsledlvTtSSCsGRvsvflegrksaeaeeeaaksggkkgggkwlfvsHdpvkeeellaelfgle 99 
                 ++K++iL++L++ + d+spkG+vDe ++++i++ins++d+vTtSSCsGR+svf eg k+   ++++ k ggk++gg wl vsHd+ +  +++++++gl+
  CCD24601.1   9 QKKKSILHDLASIQPDLSPKGTVDELCLPIIHLINSHPDMVTTSSCSGRISVFAEGLKD---HKNNVKVGGKGQGGAWLHVSHDEDNVLNWIDSVTGLD 104
                 68******************************************************996...78899******************************98 PP

                 ................SSEEEEEEE--EEEEEESSHHHHHHHHHHHHHCT-TT-EEEEECTTEEEEEEE---EEEEEEE........STS---HHHHHH CS
        TYW3 100 eeegsaksseseee..erlilfkfePmILHvlcrslesAqkllsaAleaGfreSGivslkkkkvivairsglklevpig........kellvseeylkl 188
                  ++++++ s+++    +r+il+k+eP+I+Hv+cr++e A+kl+++A+++GfreSGi s    +++vair+++k+++pig        k l+vs++y+++
  CCD24601.1 105 FSQNNNTLSARDLLanTRYILYKYEPFIIHVKCRNFEMAAKLYNTAMACGFRESGIGS----NFLVAIRINIKMDIPIGyidesenmK-LFVSQDYIHI 198
                 7666555444443377******************************************....9*********************9733.********** PP

                 HHHHHHHHHHHHHHHHHHHHHHC- CS
        TYW3 189 lvklanerfeenkkrierfeealk 212
                 l kl+  +f en+++++ ++++++
  CCD24601.1 199 LDKLTLIKFSENRRKMDDLYKKFN 222
                 ********************9986 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.34
                 SSE CS
        TYW3 114 erl 116
                 +r+
  CCD24601.1 254 KRQ 256
                 222 PP

>> DUF2347  Uncharacterized conserved protein (DUF2347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   1.1e-05     0.066      75     144 ..     177     260 ..     148     280 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
     DUF2347  75 svGvlvdssnerlskawryaekLkell.kkllesedntsvLeeyfekekakkedeessse.............kksesrersls 144
                  +G + +s+n+ l  ++ y++ L++l   k+ e++ +++ L + f++e ++k++ +s+++             ++  +r+ +++
  CCD24601.1 177 PIGYIDESENMKLFVSQDYIHILDKLTlIKFSENRRKMDDLYKKFNEELIEKDNVNSKESnketkeerrerkrREGLKRQLEMK 260
                 577788889999999**********9779****************666663333222222223333333333222222233333 PP

>> MAT1  CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  13.6   2.6e-05      0.16      62     137 ..     206     282 ..     196     286 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.6e-05
        MAT1  62 dveeTekkleq.YekenkelIlknkeklkqeeeeleeleelekeekeekrkeekqeeeeekekkekakeelideLat 137
                   +e ++k+++ Y+k n+elI+k + ++k++++e +e +++ k+ +  kr++e++ e+ + +++e+  +++++++++
  CCD24601.1 206 KFSENRRKMDDlYKKFNEELIEKDNVNSKESNKETKEERRERKRREGLKRQLEMKSESAQDTNQEQLDKKVVESIES 282
                 567778888755*********************************************************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2070  (0.115455); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2039.32
//
Query:       CCD24602.1  [L=447]
Description: hypothetical protein NDAI_0D02880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.8e-144  481.0   0.0     2e-144  480.8   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    1.8e-10   40.5   0.0    2.7e-10   39.9   0.0    1.2  1  Aminotran_1_2    Aminotransferase class I and II
    9.1e-10   38.0   0.3    1.3e-09   37.5   0.3    1.1  1  Aminotran_5      Aminotransferase class-V
    1.4e-08   34.5   0.0    2.1e-08   33.9   0.0    1.2  1  DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
    3.5e-06   26.5   0.0    5.5e-06   25.9   0.0    1.3  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00041   19.0   0.1    0.00083   18.0   0.1    1.5  1  Met_gamma_lyase  Methionine gamma-lyase
  ------ inclusion threshold ------
      0.035   13.0   0.0      0.049   12.5   0.0    1.1  1  GDC-P            Glycine cleavage system P-protein
      0.088   13.0   0.0       0.21   11.8   0.0    1.6  1  Asparaginase_C   Glutaminase/Asparaginase C-terminal domain
       0.15   11.0   0.4       0.89    8.5   0.4    1.9  1  SelA             L-seryl-tRNA selenium transferase
       0.18   11.2   0.0       0.31   10.5   0.0    1.3  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  480.8   0.0  1.1e-147    2e-144       1     382 []       6     439 ..       6     439 .. 0.97

  Alignments for each domain:
  == domain 1  score: 480.8 bits;  conditional E-value: 1.1e-147
                      HHHHHHTTTTCHT..TTTBSS--B---SBBBESSHHHH...CTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS- CS
  Cys_Met_Meta_PP   1 eTllvhagqekde..qtgavavpiyltstykfkdvdea...fageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallk 89 
                      +T+++hagqe+ +  + + +avpiy+t++y+f+d++++   f+ +  gy+YsR++npt++vleer+aaLegg aa+av+sG+aA+++ai  l++
       CCD24602.1   6 DTIQLHAGQENPDdnANRPRAVPIYATTSYVFNDSEHGsnlFGLKVPGYVYSRFQNPTQNVLEERMAALEGGVAAVAVASGQAAQTLAICGLAH 99 
                      799******98665588899*****************9999***************************************************** PP

                      TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHT.TTS CS
  Cys_Met_Meta_PP  90 aGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfasp.llq 182
                      +Gd+i++++ lYggt++++k  +k+lgie++fv  ++++++ek i+++tk+vylE+++np+++v+D+eki+++a+k+gv+vvvDntf ++ +++
       CCD24602.1 100 SGDNIISTSFLYGGTYNQFKVAFKRLGIEARFVTGDNPDDFEKLIDDKTKAVYLESIGNPKYNVPDFEKIVEIAHKHGVPVVVDNTFGAGgFFC 193
                      ****************************************************************************************998*** PP

                      -GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHH................................HHHT-B--HHHHHHHHH CS
  Cys_Met_Meta_PP 183 rplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflq................................nalGavlspfdawlllr 244
                      +p+k+gaDiv+hSaTK++gGh++++aG+iv++gk+ +++  ++++                                ++lG+++spf+a+ll++
       CCD24602.1 194 QPIKYGADIVTHSATKWIGGHGTTIAGMIVDSGKFPWADYPEKFPqfskpaegyhgtifneaygnlayivhvrvellRDLGPAISPFAAFLLIQ 287
                      ***************************************9999888************************************************ PP

                      HHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-TTSTTSTTHHHHHHHSS.SG-SEEEEEESSHH.............HHHHHHHHC-SSSEE CS
  Cys_Met_Meta_PP 245 GlkTLslRlerhqenAlkvAefLekhpkvekvyYpglpshpqhelakkqlk.gaggvlsFelksee.............ekakkfvdnlklfsl 324
                      G++TLslR erh +nAlk+A++Le++p v++v+Ypglpshp he akk+l+ g+ggvlsF +k+               ++ +++vd+lkl+s+
       CCD24602.1 288 GIETLSLRGERHGQNALKLAQWLEQSPYVSWVSYPGLPSHPYHENAKKYLSnGFGGVLSFGVKDIPgqtkeelaakpfsASGAQVVDSLKLASN 381
                      ************************************************98625778******987777888999999988899*********** PP

                      CSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HHHHHHHHHHHHH CS
  Cys_Met_Meta_PP 325 aeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvdDliaDlkqale 382
                      ++++G+ ++l+++p+++th++++++e+  +gvt+dliR+svG E +dD+iaD++q++e
       CCD24602.1 382 LANVGDSKTLVIAPYFTTHEQLDDDEKLLSGVTKDLIRVSVGTEFIDDIIADFQQSFE 439
                      *******************************************************996 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.5e-13   2.7e-10      41     230 ..      60     218 ..      55     237 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.5e-13
                    -BTTHHHHHHHHHHHHHCTCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-EEEEEES....S-THHHHHHHHTTSEEEEEEBEETTTTEE-H CS
  Aminotran_1_2  41 gpidglpeleealakflgrseklklkreaavvvgsGagaliealifllklnpgdeilvpdp....tyasyknilrlsggevvryplyseedfhldl 132
                    ++++ +  lee++a + g          aav v sG  a   a+  l++   gd+i++ +     ty ++k +++  g+e + +        + + 
     CCD24602.1  60 QNPT-QNVLEERMAALEG--------GVAAVAVASGQAAQTLAICGLAH--SGDNIISTSFlyggTYNQFKVAFKRLGIEARFVT-------GDNP 137
                    5555.7778999999999........77799999998877777777776..******998644448899****************.......8899 PP

                    HHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTTSSGGG CS
  Aminotran_1_2 133 ealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKafGlaGe 228
                    +++e+++++      ktk +++es+ NP   v++ e+++++   a+k+++ ++vD +++++ f        +  ++ + +++++ s  K  G  G 
     CCD24602.1 138 DDFEKLIDD------KTKAVYLESIGNPKYNVPDFEKIVEI---AHKHGVPVVVDNTFGAGGFF-------CQPIKYG-ADIVTHSATKWIGGHGT 216
                    *********......*************9888888888888...***************99996.......3334333.34777777777666665 PP

                    -E CS
  Aminotran_1_2 229 Rv 230
                     +
     CCD24602.1 217 TI 218
                    55 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.3   7.5e-13   1.3e-09      75     210 ..      91     218 ..      76     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 7.5e-13
                  HHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCBEGGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EE CS
  Aminotran_5  75 nlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegeldldelekllnektklvaithvsnvtGtiqpveeigklakkkgalv 172
                  +l++ +l    + gd+i+ t+  + ++ +  + + kr g++ ++++ d     ++d++ekl+++ktk+v++  + n   ++ ++e+i+++a+k+g+ v
   CCD24602.1  91 TLAICGL---AHSGDNIISTSFLYGGTYNQFKVAFKRLGIEARFVTGD-----NPDDFEKLIDDKTKAVYLESIGNPKYNVPDFEKIVEIAHKHGVPV 180
                  4445555...56788888888888888888888888888888888774.....589****************************************** PP

                  EEE-TTTTTTS---HHHHTESEEEEETTTTTSSTT-EE CS
  Aminotran_5 173 lvDaaqavghipidvkklgvDflafsghKllgPtGiGv 210
                  +vD + ++g    +  k+g+D+++ s+ K +g  G+++
   CCD24602.1 181 VVDNTFGAGGFFCQPIKYGADIVTHSATKWIGGHGTTI 218
                  ***********************************997 PP

>> DegT_DnrJ_EryC1  DegT/DnrJ/EryC1/StrS aminotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.2e-11   2.1e-08      22     146 ..      61     185 ..      53     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.2e-11
                      SHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHTTTTTT-EEEEESSS-THHHH....HHHHTT-EEEEE-B-TTTSSB-GGGCGGG--TT CS
  DegT_DnrJ_EryC1  22 gpeveeFEkafaaylgvkhaiavssGtaAlhlaLralgvgpgdeVIvpsltFvatan....avlelgakpvfvDvdpdtynidpaaieaaiter 111
                      +p+ + +E+++aa  g   a+av+sG aA  la+  l  + gd +I +s+ + +t n    a  +lg ++ fv  d      +p++ e++i  +
       CCD24602.1  61 NPTQNVLEERMAALEGGVAAVAVASGQAAQTLAICGLAHS-GDNIISTSFLYGGTYNqfkvAFKRLGIEARFVTGD------NPDDFEKLIDDK 147
                      788999*************************999888777.**************994444457899999999988......89********** PP

                      EEEEEEB-GGG...B---HHHHHHHHHHCT-EEEEE-T CS
  DegT_DnrJ_EryC1 112 tkaIlpVhlyG...qvadmdalkaiaakhglkvieDaA 146
                      tka+ +  +     +v d++++ +ia+khg++v+ D  
       CCD24602.1 148 TKAVYLESIGNpkyNVPDFEKIVEIAHKHGVPVVVDNT 185
                      ***998766543224559****************9965 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   3.1e-09   5.5e-06      30     168 ..      60     184 ..      55     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 3.1e-09
                      --HHHHHHHHHHHHHTT-SEEEEES-HHHHHHHHHHHH--TTEEEEEETT-HHHHSSTTHHHHC.C--EEEEE-EBTTTBE-HHHHHHHS--S- CS
  Beta_elim_lyase  30 edktvnrLedavaelfgkeaalfvpqGtaAnsillkillqrgeevivtepahihfdetgaiael.agvklrdlknkeaGkmdlekleaaikevg 122
                      +++t n+Le+++a+l g  aa+ v++G aA  +++  l+++g+++i t+   + ++ +  +a+   g+++r +++++     ++++e++i++  
       CCD24602.1  60 QNPTQNVLEERMAALEGGVAAVAVASGQAAQTLAICGLAHSGDNIISTSFLYGGTYNQFKVAFKrLGIEARFVTGDN-----PDDFEKLIDD-- 146
                      58999*******************************************999999999966666558999*******9.....*********9.. PP

                      TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEE CS
  Beta_elim_lyase 123 aheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDg 168
                          k+k+++l+   n      + +   +++ +ia+k+g+p+++D 
       CCD24602.1 147 ----KTKAVYLESIGN----PKYNVPDFEKIVEIAHKHGVPVVVDN 184
                      ....699****98777....58***********************5 PP

>> Met_gamma_lyase  Methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   4.6e-07   0.00083     113     238 ..     103     224 ..      50     233 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4.6e-07
  Met_gamma_lyase 113 eviGlrgegqgslkdfgikykevdlleegkv..dieavkeaikektkliliqrskGyserkslsieeieeiiklvkeinedvivfvdncyGefv 204
                      ++i ++    g+ ++f++ +k++ + +      + +  ++ i +ktk + +  s G    + +++ + e+i+++ ++  + v v vdn +G   
       CCD24602.1 103 NIISTSFLYGGTYNQFKVAFKRLGIEARFVTgdNPDDFEKLIDDKTKAVYLE-SIG---NPKYNVPDFEKIVEIAHK--HGVPVVVDNTFGAGG 190
                      5555555666788888888888887775322215677889999999999986.777...57899********99765..5677889*****999 PP

  Met_gamma_lyase 205 eekePtevGadliaGsliknpGGgiaktGGyiaG 238
                         +P++ Gad+++ s  k +GG  +++ G i+ 
       CCD24602.1 191 FFCQPIKYGADIVTHSATKWIGGHGTTIAGMIVD 224
                      999********************99999999985 PP

>> GDC-P  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.7e-05     0.049     195     258 ..     144     208 ..      79     216 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.7e-05
                 ..S-EEEEEEE.ES-TTSB----HHHHHHHHHTT-EEEEEE-TTGGGTB--HHHHT-SEEEEE-T CS
       GDC-P 195 kekevagvlvq.ypnteGriedlkelvekakkkkslvvvaadllaLtllkpPgelgaDivvGsaq 258
                   +++ +v +    n + ++ d++++ve a+k+ + vvv     a + +  P ++gaDiv  sa 
  CCD24602.1 144 IDDKTKAVYLEsIGNPKYNVPDFEKIVEIAHKHGVPVVVDNTFGAGGFFCQPIKYGADIVTHSAT 208
                 44566666655134667799****************************************98875 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.21       8      58 ..     132     183 ..     129     200 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                     -TT--HHHHHHHHHTT--EEEEEEBTTTB--H.HHHHHHHHHHTTT-EEEEE CS
  Asparaginase_C   8 hpgmdtkvlkallkkgakGvvlegtGvGnlps.allealkeakargivvvat 58 
                     + g +++ +++l++ + k+v le+ G+ + +  ++ + ++ a ++g++vv+ 
      CCD24602.1 132 VTGDNPDDFEKLIDDKTKAVYLESIGNPKYNVpDFEKIVEIAHKHGVPVVVD 183
                     67889999***********************77*****************85 PP

>> SelA  L-seryl-tRNA selenium transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.4    0.0005      0.89      50     224 ..      65     223 ..      60     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0005
                 HHHHHHHHHHHT-SEEEEES-HHHHHHHHHHHHHBTSEEEEETTSGTEETTTEEHHHH.HHHHTBEEEEESBSSB--HHHHHHT--TTEEEEE..EE-- CS
        SelA  50 alveellkeltgaedalvvnnnaaavllvLntlaagkeviisrGeLveiGGsfriPdv.mkkaGvkLvevGttnkthlkDyekainentalll..kvht 145
                 + +ee +  l g  +a+ v    aa  l++  la+  + iis   L   GG++   +v +k+ G++ + v   n     D+ek i+++t  +    + +
  CCD24602.1  65 NVLEERMAALEGGVAAVAVASGQAAQTLAICGLAHSGDNIISTSFL--YGGTYNQFKVaFKRLGIEARFVTGDNP---DDFEKLIDDKTKAVYleSIGN 158
                 5678888999999999999999999999999999999999998877..588887766636888999999988775...799999999886543114666 PP

                 -SEEEEES-B---HHHHHHHHHHHT--EEEEEES-B-S-GGGGT-----BHHHHHHTT-SEEEEETTSTT-S...SS-EEEE CS
        SelA 146 snyrieGftkevelaeLvelgkekglpvleDlGsGllvdlseyglskePtvqealaeGvdlvsfsGDkllGg...pqaGiiv 224
                   y++  f       ++ve+++++g+pv+ D   G+       g+     + + ++ G+d+v+ s  k +Gg     aG+iv
  CCD24602.1 159 PKYNVPDFE------KIVEIAHKHGVPVVVDNTFGA------GGF-----FCQPIKYGADIVTHSATKWIGGhgtTIAGMIV 223
                 678777775......577899999999999965553......244.....44558899999999999999882223578777 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00017      0.31      24      51 ..     163     190 ..     143     208 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00017
                  BSSHHHHHHHHHHH-SSEEEEETTCCTT CS
  CPSase_L_D2  24 vetleealaiakeigyPviikaafglGG 51 
                  v + e+ ++ia+++g+Pv++  +fg GG
   CCD24602.1 163 VPDFEKIVEIAHKHGVPVVVDNTFGAGG 190
                  678899*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3316.44
//
Query:       CCD24603.1  [L=783]
Description: hypothetical protein NDAI_0D02890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.6e-150  501.0   0.0   4.6e-150  500.6   0.0    1.1  1  Aconitase    Aconitase family (aconitate hydratase)
    1.9e-47  160.9   0.0    3.8e-47  159.9   0.0    1.5  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  500.6   0.0  5.1e-154  4.6e-150       1     461 []      66     503 ..      66     503 .. 0.94

  Alignments for each domain:
  == domain 1  score: 500.6 bits;  conditional E-value: 5.1e-154
   Aconitase   1 ekiwdahlv..ee....egiayv...pdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefL 90 
                 eki+++hl   +e    +g++y+   pdrv++qd+t+++a+ ++++a+ +             + pv++++dh+++a+ + ek+l+++++ nke+y+fL
  CCD24603.1  66 EKILYSHLDnpQEqdieRGVSYLklrPDRVACQDATAQMAILQFMSAGLPE-----------VAKPVTVHCDHLIQAQIGGEKDLKRAIDINKEVYDFL 153
                 79999999976224565568888899**********************999...........999********************************** PP

   Aconitase  91 ksaakafgirvvppgqGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavi 189
                  +a++++++ ++ pg+GI+Hq++lE+ +a+pg++++gtDSHT+++gglG laiGvGg++a++v++  p+elk+pk++gvkltGk++ ++++kD++l+++
  CCD24603.1 154 TTATAKYNMGFWGPGSGIIHQIVLEN-YAFPGALIIGTDSHTPNAGGLGQLAIGVGGADAVDVMADLPWELKAPKILGVKLTGKMNGWTSPKDIILKLA 251
                 **************************.************************************************************************ PP

   Aconitase 190 gklrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaavlveaydkaqalfelaadedaeydkvleldlstle 288
                 g+ ++kg++gk+vE+fG+gv++ s++++ Ti+NM+aE+GAtt++fp+++++++YLkat+r e a     ++  q+ f l+ad+++eyd+++eldl tle
  CCD24603.1 252 GITTVKGGTGKIVEYFGPGVDTFSATGMGTICNMGAEIGATTSVFPFNKSMVDYLKATRRGEIAD-F--AQLYQKDF-LSADKGCEYDEIVELDLTTLE 346
                 ************************************************************99883.3..33334455.89******************* PP

   Aconitase 289 psvagpkrPqdavplselvkkefkeelekeaaekaleyklkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgvktsvaPGSevv 387
                 p+v+gp++P+ a+p+s++++      +           +  +g++l+   + +++igSCTNss+ed+++ a++++ a+++glk+k+   ++v+PGSe++
  CCD24603.1 347 PYVNGPFTPDLATPISKMKD------V-----------AVASGWPLD---IRVGLIGSCTNSSYEDMSRSASIIKDAASHGLKAKT--IFTVTPGSEQI 423
                 ***************55553......2...........25679****...**********************************99..9********** PP

   Aconitase 388 kayleaeGlleiLekaGfevvgagCstCignsdrle....egeaivsssNRNFegRq..gpntrayLaSPelvvaaAlaG 461
                 +a++e++G l+++++ G  v++++C++Cig++dr +    e+++ivss+NRNF  R+  +p+t+a++aSPelv+a+A+aG
  CCD24603.1 424 RATIERDGQLQTFKEFGGIVLANACGPCIGQWDRQDikkgEKNTIVSSYNRNFTSRNdgNPQTHAFVASPELVTAFAIAG 503
                 **********************************878877777**************8669******************9 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.9   0.0   4.2e-51   3.8e-47       1     130 [.     582     711 ..     582     712 .. 0.99

  Alignments for each domain:
  == domain 1  score: 159.9 bits;  conditional E-value: 4.2e-51
                  CCCCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHH CS
  Aconitase_C   1 mekllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalr 98 
                  m++l+k+ G+tt+d++s+++++lk+++++e++++n+++g++++e+k+an+ +++++ge++ v+d+a++y+++g+k+vvi+++nfGeGSSRehAA+++r
   CCD24603.1 582 MPILIKALGKTTTDHISMAGPWLKYRGHLENISNNYMIGAINAENKKANSIRNVYTGEYKGVPDTARDYRDQGIKWVVIGDENFGEGSSREHAALEPR 679
                  68899********************************************************************************************* PP

                  HTTEEEEEES-B-HHHHHHHHHTT-EEEEEST CS
  Aconitase_C  99 llGikaviaeSFerIfennliknglLplefke 130
                  +lG+ a+i+ SF+rI+e+nl+k+glLpl+fk+
   CCD24603.1 680 FLGGFAIITRSFARIHETNLKKQGLLPLNFKN 711
                  ******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5378.11
//
Query:       CCD24604.1  [L=1929]
Description: hypothetical protein NDAI_0D02900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-43  148.0   0.0    9.7e-41  140.2   0.0    2.7  1  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    8.5e-28   97.0   0.1    2.6e-27   95.4   0.1    1.8  1  PI3Ka           Phosphoinositide 3-kinase family, accessory d
  ------ inclusion threshold ------
      0.089   13.3   0.8         29    5.3   0.0    3.5  3  CCM2_C          Cerebral cavernous malformation protein, harm
       0.25   11.6   1.2        5.7    7.2   0.1    2.7  2  DUF5354         Family of unknown function (DUF5354)


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.2   0.0   2.2e-44   9.7e-41       2     249 ..    1671    1876 ..    1670    1877 .. 0.96

  Alignments for each domain:
  == domain 1  score: 140.2 bits;  conditional E-value: 2.2e-44
                      EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHHHHHHCHC CS
  PI3_PI4_kinase    2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasveslrvaldk 94  
                       + i+kvgdd+rqd l +q+++++++++s+ +++      + +y+v +++++cg+i ++++s + + l +e                      
      CCD24604.1 1671 QGAIFKVGDDCRQDVLALQLISMFKTIWSSIGLDVY----VFPYRVTATAPGCGVIDVLPNSISRDMLGREAV-------------------- 1739
                      5789*******************************9....*******************************98.................... PP

                      HCCHHHHHCCHHHHHHTSSTTHHHHHHHHHSSSH..HHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHC CS
  PI3_PI4_kinase   95 kklkkekklkfekrtalkpksgllqeFvkkspsa..eewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewk 185 
                                          +gl+++F+ k+ s+   e+++ar++Fv+sla++sv++y+l+  DRh++Ni+  +++g++ h DfG+i++  + 
      CCD24604.1 1740 --------------------NGLYEYFITKFGSEstIEFQNARNNFVKSLAGYSVISYLLQFKDRHNGNIMY-DDKGHCLHTDFGFIFDIVPG 1811
                      ....................89***********955599999******************************.***************88888 PP

                      SSSS-.SSSSSS-THHHHHHT...STTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase  186 llpfpqekvPfrltrelvlai...dpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249 
                        +f  e vPf+lt+e+v+++   ++ + ++ f+e+c +a+ ++r +++ ++++ k ++++gl++++
      CCD24604.1 1812 GVKF--EAVPFKLTKEMVKVMggsSQAAAYQDFEELCIKAYLSARPHMDSILECVKPMLESGLPCFK 1876
                      8888..6**************98889999***********************************986 PP

>> PI3Ka  Phosphoinositide 3-kinase family, accessory domain (PIK domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.1   5.7e-31   2.6e-27      60     184 ..    1442    1572 ..    1429    1573 .. 0.92

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 5.7e-31
                  HHHHHHHHHHTTSHHTTHHHHTTTTSTTS--.HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHGGSSSSSSHHHHHHHHHHHHSHHHHHHHHHHHHHH CS
       PI3Ka   60 sevkealelldsWaeididdaLeLLdskfkd.esvreyavkvLekasdeelllYllQLVqalkyepikdsalaefLlkralknkrlghfffWyLkse 155 
                  s+ k++++++ +W+++++ ++++L+ +++++ ++  +y+v +Le+ + +  ++Y++Q+Vq+l+y+  k+++++++++++a++n +++h+++W+L ++
  CCD24604.1 1442 SKLKDKMHIVLYWKPVSPLKSINLFLPQWNSdSFLLQYSVFSLESHDVNVTFFYVPQIVQCLRYD--KTGYVERLIFDTAKINILFSHQIIWNLFAN 1536
                  5578999**********************998*********************************..****************************** PP

                  H.......HCCTHHHHHHHHHHHHHHHCHHHHHHHH CS
       PI3Ka  156 i.......edkevserfksllesylrklskslkell 184 
                  +          ++++++++++e++++++  + ++++
  CCD24604.1 1537 CykddegtVPDDIKPTLDRVRERMVSSFDADTLDFY 1572
                  *99876655567899999999999999988877765 PP

>> CCM2_C  Cerebral cavernous malformation protein, harmonin-homology
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.013        58      40      83 ..     162     208 ..     125     211 .. 0.77
   2 ?    5.3   0.0    0.0065        29      65      85 ..     361     381 ..     299     398 .. 0.84
   3 ?   -3.8   0.0         4   1.8e+04      17      36 ..    1881    1900 ..    1879    1911 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.013
      CCM2_C  40 rlgaeieefcsellqLYgderkfLl..lG.lrPfipdkdvgvfesfl 83 
                 r ++ i+ ++s ++qLY  ++  Ll  lG +  fi  k++    +f+
  CCD24604.1 162 RCSKLIDGYLSAVKQLYSSKQSSLLslLGfMNGFIQGKNSPELATFV 208
                 77888999************999853367578999999988877775 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0065
      CCM2_C  65 lGlrPfipdkdvgvfesfles 85 
                 l l Pfi d d++ f++f++ 
  CCD24604.1 361 LCLVPFIADPDSELFQDFIRI 381
                 5678**************975 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 4
      CCM2_C   17 letLrsklspeelqkfalLl 36  
                  +++Lr++++pe  q+ a+L+
  CCD24604.1 1881 IKNLRNRFQPERDQHEAALF 1900
                  57899999999877666554 PP

>> DUF5354  Family of unknown function (DUF5354)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.047   2.1e+02      37      83 ..     279     326 ..     274     340 .. 0.77
   2 ?    7.2   0.1    0.0013       5.7      15      74 ..    1159    1221 ..    1150    1239 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.047
     DUF5354  37 elcsympdpkdlekfyvnGvdeesddyenvlklfeeteekya..vlnvC 83 
                 +l+sy+ + ++  ++++   d++sdd ++++  f+ + +k++  ++++C
  CCD24604.1 279 DLSSYLLEMQH-LTYQITQEDNDSDDKTQIVDEFTYKIRKHKevLTSIC 326
                 58899985555.4567777899*************99998862234566 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0013
     DUF5354   15 rCwepvdekn...assgysLSepiyelcsympdpkdlekfyvnGvdeesddyenvlklfeete 74  
                   Cw ++ ++n    s++y L e+ y++ +y p +k+  +   n v+++ + + +v+k+f ++ 
  CCD24604.1 1159 YCWLESIKNNvgvYSRKYDLIEEEYQIMTYKPYNKKAINREANFVSQSMQPHRHVIKFFLSHF 1221
                  5996655544222699****************999999999**************99997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1929 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       651  (0.0363099); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.03u 0.28s 00:00:01.31 Elapsed: 00:00:00.48
# Mc/sec: 12017.16
//
Query:       CCD24605.1  [L=189]
Description: hypothetical protein NDAI_0D02910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-34  118.9   0.0    1.7e-34  118.5   0.0    1.3  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.0   9.5e-39   1.7e-34      33     138 ..      70     173 ..      34     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 118.5 bits;  conditional E-value: 9.5e-39
                 EEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHH CS
      UQ_con  33 likgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltlesvllsiqsLlaepnpesplnkeaakllkkdree 131
                 +   p++++Y+gg F+++lef++ YP++pP+v +++k++HPn+d +G+vcl+iL+e+ Wspal+++s+++ ++ Ll epn ++plnk+aa +l++d ++
  CCD24605.1  70 TAY-PDEGFYKGGHFTFKLEFNDAYPIEPPTVICTSKLYHPNIDIDGKVCLNILRED-WSPALDVQSIIIGLLFLLLEPNAKDPLNKDAAMMLSTDTAR 166
                 444.69*************************************************55.***************************************** PP

                 HHHHHHH CS
      UQ_con 132 ykkkvke 138
                 + + v++
  CCD24605.1 167 FASLVNR 173
                 **99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1390.32
//
Query:       CCD24606.1  [L=306]
Description: hypothetical protein NDAI_0D02920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.9e-26   90.6   0.0    1.2e-25   89.8   0.0    1.3  1  Polysacc_deac_1  Polysaccharide deacetylase
  ------ inclusion threshold ------
      0.055   13.5   0.0          9    6.4   0.0    2.3  2  RuBisCO_small    Ribulose bisphosphate carboxylase, small cha


Domain annotation for each model (and alignments):
>> Polysacc_deac_1  Polysaccharide deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   1.3e-29   1.2e-25       9     123 ..     116     227 ..     112     228 .. 0.96

  Alignments for each domain:
  == domain 1  score: 89.8 bits;  conditional E-value: 1.3e-29
                      EEEEEEESSCSCHHHHHHHHHHCT--EEEEE-HHHHCH-HHHHHHHHHTTEEEEE--SS--EGGGSHHHHHHHHHHHHHHHHHHHHS----EEE CS
  Polysacc_deac_1   9 valTfDdgprdntteilpvLkkykvkatffvigglvedypdevremaasGveignHtinhsnlkrlseeevrreierakdalrkalgreprlfr 102
                      ++ TfDdgp    ++ l +L+k k + tff +g ++ ++pd+ r+  ++G+  g+Ht++h +l +ls+e++ ++i+++  a+++  ++ p++fr
       CCD24606.1 116 LSQTFDDGP---SPATLRLLNKLKHNTTFFALGINTVNHPDIYRKTMEAGHLMGSHTWSHAYLPSLSNEQIIAQIQWSIWAMNATGHHFPKWFR 206
                      578******...8999********************************************************************9999****** PP

                      -GGGEE-HHHHHHHHHTT.EE CS
  Polysacc_deac_1 103 yPygsasatvlevarelgfay 123
                      +Pyg ++++v+++ r+ g+++
       CCD24606.1 207 PPYGGIDNRVRAITRQFGLQA 227
                      ******************986 PP

>> RuBisCO_small  Ribulose bisphosphate carboxylase, small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.001         9       5      23 ..     173     191 ..     169     203 .. 0.87
   2 ?    4.8   0.0    0.0032        28       4      38 ..     240     274 ..     237     285 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.001
                    TTS----HHHHHHHHHHHH CS
  RuBisCO_small   5 sylpdltdeeiakqveyll 23 
                     ylp+l++e+i +q++  +
     CCD24606.1 173 AYLPSLSNEQIIAQIQWSI 191
                    79*************9866 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0032
                    TTTS----HHHHHHHHHHHHHTT-EEEEEEE-GGG CS
  RuBisCO_small   4 fsylpdltdeeiakqveyllsqgwapaiEfedkek 38 
                    +s  p  t+e+i ++v++  sqg  + +E++ +++
     CCD24606.1 240 VSNDPIRTEEQIYEEVRKWKSQGGGLILEHDGSHR 274
                    57788999**********************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2241.49
//
Query:       CCD24607.1  [L=960]
Description: hypothetical protein NDAI_0D02930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-13   49.6   0.4    7.1e-13   48.2   0.4    1.8  1  GRIP          GRIP domain
    0.00017   20.6 152.7    0.00092   18.2  19.2    6.7  7  Spc7          Spc7 kinetochore protein
     0.0032   17.5 151.2      0.015   15.3  10.8    9.4 10  TPR_MLP1_2    TPR/MLP1/MLP2-like protein
     0.0058   17.0   3.7     0.0058   17.0   3.7    9.6  8  OmpH          Outer membrane protein (OmpH-like)
  ------ inclusion threshold ------
        1.1    8.9  10.1       0.61    9.8   5.7    2.8  2  DUF2291       Predicted periplasmic lipoprotein (DUF2291)
        1.5    9.0   7.3          2    8.7   1.0    4.5  2  DASH_Dad1     DASH complex subunit Dad1


Domain annotation for each model (and alignments):
>> GRIP  GRIP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.4   2.4e-16   7.1e-13       3      44 .]     916     955 ..     914     955 .. 0.95

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 2.4e-16
        GRIP   3 nleYLKNVllqFLeskeaserkqLvpVlstlLkfspeEeqkl 44 
                 ++ Y KNVll FLe++e  +r qL+pV+s+lL++++ +e++l
  CCD24607.1 916 KVAYMKNVLLGFLEHRE--QRSQLLPVISMLLQLDSNDEKRL 955
                 578**************..********************986 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6  16.6      0.67     2e+03     206     275 ..     134     203 ..      66     209 .. 0.61
   2 ?   -2.4  30.8      0.59   1.8e+03     153     254 ..     145     253 ..     126     256 .. 0.76
   3 !    9.4  24.3   0.00015      0.44     138     271 ..     197     321 ..     195     331 .. 0.86
   4 !   18.2  19.2   3.1e-07   0.00092     169     281 ..     377     491 ..     350     493 .. 0.83
   5 !    7.9  20.1   0.00042       1.3     137     255 ..     485     599 ..     482     602 .. 0.94
   6 !   12.6  23.6   1.6e-05     0.047     144     290 ..     604     753 ..     601     761 .. 0.93
   7 !    8.4  17.7   0.00029      0.88     138     267 ..     739     874 ..     738     881 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.67
        Spc7 206 eelaelkaeieekkkelaelqeqleeleekieelke.qkseleeeiaeaervleeckgwsesevsrlkeev 275
                 +e+++l +e +e +++l+++ +++eele+k+++ +e   +e+ e+ ++ ++v +++  +s++ev+rlk+ +
  CCD24607.1 134 DEIKRLTKENNESRERLSDR-TEIEELEKKFNSEREnLQREIDEAKEQRQNVERQKDTSSADEVDRLKTLL 203
                 34455555555554444443.34555555544332202233333333333444444455666777776655 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.59
        Spc7 153 edkelLekqeeeldellpeleeekaeleeeleklqeaaeeles....idkeeLeelreelaelka....eieekkkelaelqeqleeleekieelkeqk 243
                 e +e+L+ ++ e++el +++++e+++l++e+++ +e+++++e     +  +e+  l+  l+e ++    ei+ ++++la  q++++++++k+e++++q+
  CCD24607.1 145 ESRERLS-DRTEIEELEKKFNSERENLQREIDEAKEQRQNVERqkdtSSADEVDRLKTLLEEKETmylsEIKILEDKLAAAQKEKDDKQNKLEKVEKQY 242
                 3344444.4567888889999999999998888888666666555557788888888888887743333889999************************ PP

        Spc7 244 seleeeiaeae 254
                 +e ++++ e++
  CCD24607.1 243 DEEQAQLLESQ 253
                 ****9998876 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00015
        Spc7 138 egLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleeki 236
                 + Lk+ lee+ +   ++ + Le++ + +++ +++ +++ +++e++++++q+   +l +++  e+ +l+ +l+e ++ +     +++ l+eql e++++i
  CCD24607.1 197 DRLKTLLEEKETMYLSEIKILEDKLAAAQKEKDDKQNKLEKVEKQYDEEQA---QLLESQAREVTTLKTQLDESNKRLGDITSKMKPLEEQLVEKAKTI 292
                 678888888888889999999999999999999999999999999999999...5666999************************************** PP

        Spc7 237 eelkeqkseleeeiaeaervleeckgwsesevsrl 271
                 +el+eq ++  ++i+   ++      ++e+e+ +l
  CCD24607.1 293 QELQEQLNKSTSAIELPTKT------VTETEITTL 321
                 ************99955554......445555555 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 3.1e-07
        Spc7 169 lpeleeekaeleeeleklqe...aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgws 264
                 ++ l + +++ ++e+++ ++   +++e +++  eeL+ + e+lael++e +++ +el++ +e l+++++++ee +e ++e+ +++ +a++ ++e    +
  CCD24607.1 377 YNTLLKDFEAFQSEHKDCKDweeKYNE-TKSHLEELKDVSEKLAELEEEKNNLGAELSKTKEALTAKNTEVEEQREMMREIGNDLVAAKDQIKESSLGK 474
                 344445555555555555552213333.447899***************************************************************** PP

        Spc7 265 esevsrlkeevkaleel 281
                 ++e+ r++++v++l+++
  CCD24607.1 475 NEEIARWTAQVENLKNE 491
                 **************986 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.00042
        Spc7 137 legLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleek 235
                 +e+Lk++ e+++++ ++ +++Lek+ + l++  ++l++++ + +++l++ +++ +e       ++++  ++l++++ ++++ k+++ ++++ +  le++
  CCD24607.1 485 VENLKNENEKIISENKTKQSELEKNTAALTDEIEKLKTKYMDASKRLKDNEARMNE----ALSKIQNENNRLSNQMRDYNSVKTNVLQKEKTISYLENQ 579
                 89**************************************************8888....78899999******************************* PP

        Spc7 236 ieelkeqkseleeeiaeaer 255
                 i+  +e+k ++e+ i   +r
  CCD24607.1 580 IKGYTEEKIKTEKSIDMLKR 599
                 ***********999987765 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 1.6e-05
        Spc7 144 leenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesid...keeLeelreelaelkaeieekkkelaelqeqleeleekieel 239
                 l+++l+ l++++++L+++ ++ ++ ++++ +e  +l+e+l  lq++++ l++i+   +e+  +++++ +el+++++e +k++ +l+++l++ ++ i++ 
  CCD24607.1 604 LTNRLDLLKKENQTLHDNVKKNSNSYENYLKENGKLSERLSILQDKYDALQNIKsnsNEQTDSIKRQCEELNVKLREASKRIISLEDELNDYTTIIQDK 702
                 788999***************************************999998855334889999************************************ PP

        Spc7 240 keqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltgwkivsls 290
                 + + ++++  ++e+++  + +++  ++ v +l++e ++l++++ ++  +++
  CCD24607.1 703 TRETDTMRRLLSESQNDEKTRQHQLTEKVTQLTNEKEKLDSELSLQTARIN 753
                 *****************************************9998877765 PP

  == domain 7  score: 8.4 bits;  conditional E-value: 0.00029
        Spc7 138 egLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles......idkeeLeelreelaelkaeieekkkelaelqeqle 230
                 e+L ++l+ + + ++++ +  ++  + l++ +++l+ ++++l +e+++l++ ++ ++        d+ eLe+l ++l+e+ ++ + k +el++ +eql 
  CCD24607.1 739 EKLDSELSLQTARINREINDWKHITNDLKSEVHALKLREQQLLSEITTLNSLNDTMKRksvathEDSGELEKLTSNLKEALSKADGKIQELQNSNEQLM 837
                 678888999999999999999999***************************555555444555588999998877777777777777777777777777 PP

        Spc7 231 eleekieelkeqkseleeeiaeaervleeckgwsese 267
                 +l++++++  e++++    ++++ + l+e k++s+ e
  CCD24607.1 838 HLNNDVNKKLERITKNYRTLSNQLNALREGKEISARE 874
                 7766666666666655555555555555566555554 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1  11.6    0.0037        11      64     119 ..     134     188 ..     123     190 .. 0.79
   2 !    9.1  23.1   0.00043       1.3       4     109 ..     201     307 ..     198     321 .. 0.93
   3 ?   -2.2   0.9       1.3     4e+03      67      91 ..     329     353 ..     310     386 .. 0.53
   4 !    9.9  14.8   0.00024      0.73      25     110 ..     378     462 ..     360     470 .. 0.81
   5 !   10.4   9.8   0.00017       0.5      51     117 ..     462     529 ..     455     532 .. 0.85
   6 !    8.3   5.0   0.00077       2.3      57     128 ..     540     610 ..     533     611 .. 0.70
   7 !   15.3  10.8   5.2e-06     0.015       5     107 ..     589     694 ..     586     701 .. 0.88
   8 !    7.1   7.4    0.0018       5.4      53     117 ..     679     743 ..     676     747 .. 0.93
   9 ?   -0.4  12.7      0.37   1.1e+03       9      87 ..     705     784 ..     699     800 .. 0.71
  10 !    6.3   7.4    0.0031       9.2      11      83 ..     799     871 ..     792     887 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0037
  TPR_MLP1_2  64 eelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqN 119
                 +e+++l++e +e ++++   ++e+ee e++ ++++e+l++e++e+++++++++ q 
  CCD24607.1 134 DEIKRLTKENNESRERLS-DRTEIEELEKKFNSERENLQREIDEAKEQRQNVERQK 188
                 556666666666665554.47889999***********************999995 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00043
  TPR_MLP1_2   4 ksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkY.erelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeel 101
                 + lee+ +++++e++ +e+kl+++q++   +++ +++ +++Y e++ ++ +++++e+++l+++l+e ++++ +++++ + ++++l e+ + ++e +e+l
  CCD24607.1 201 TLLEEKETMYLSEIKILEDKLAAAQKEKDDKQNKLEKVEKQYdEEQAQLLESQAREVTTLKTQLDESNKRLGDITSKMKPLEEQLVEKAKTIQELQEQL 299
                 5689999999********************************445689999************************************************ PP

  TPR_MLP1_2 102 ekelsele 109
                  k  s +e
  CCD24607.1 300 NKSTSAIE 307
                 **998776 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.3
  TPR_MLP1_2  67 nelkaeiaelkaeaesakaeleese 91 
                 n+ k  +++ k+++++ + + +e+e
  CCD24607.1 329 NQKKRNRKKNKKQNNAPTVATKEEE 353
                 2233333333333333333333333 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00024
  TPR_MLP1_2  25 qklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselek 110
                 ++l +d e+ +++ k+ ++  e+  ++ ++ ++el+++ e+l+el++e ++l ae+ ++k++l ++  + eeq+e++++  ++l +
  CCD24607.1 378 NTLLKDFEAFQSEHKDCKD-WEEKYNETKSHLEELKDVSEKLAELEEEKNNLGAELSKTKEALTAKNTEVEEQREMMREIGNDLVA 462
                 5566666666666666665.788888999***********************************************9986666555 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00017
  TPR_MLP1_2  51 khaedvkelqalr.eelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlne 117
                   ++++ke +  + ee+++ +a++++lk+e+e+  +e++++++++e+   +l +e+++l++++ d ++
  CCD24607.1 462 AAKDQIKESSLGKnEEIARWTAQVENLKNENEKIISENKTKQSELEKNTAALTDEIEKLKTKYMDASK 529
                 555556655554426889*********************************************99876 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 0.00077
  TPR_MLP1_2  57 kelqalreelnelkaeiaelkaeaesakaeleesees...weeqkeelekelselekriedlneqNklLhdQlEs 128
                 ++l+++ +e n+l +++++ +    s+k+++ ++e+    +e+q + + +e+ ++ek i+ l+  N +L ++l+ 
  CCD24607.1 540 EALSKIQNENNRLSNQMRDYN----SVKTNVLQKEKTisyLENQIKGYTEEKIKTEKSIDMLKRENGILTNRLDL 610
                 455555555555555555554....455555555554112788999999************************97 PP

  == domain 7  score: 15.3 bits;  conditional E-value: 5.2e-06
  TPR_MLP1_2   5 sleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkee... 100
                 + e+ i++lk e+  ++++l  l+++ ++ ++ +k+  ++Ye+ l ++ + ++ l+ l ++++ l++  ++ +++ +s k ++ee   ++ e  ++   
  CCD24607.1 589 KTEKSIDMLKRENGILTNRLDLLKKENQTLHDNVKKNSNSYENYLKENGKLSERLSILQDKYDALQNIKSNSNEQTDSIKRQCEELNVKLREASKRiis 687
                 5678899999999999***********************************************************************999998886222 PP

  TPR_MLP1_2 101 lekelse 107
                 le+el++
  CCD24607.1 688 LEDELND 694
                 5555555 PP

  == domain 8  score: 7.1 bits;  conditional E-value: 0.0018
  TPR_MLP1_2  53 aedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlne 117
                  e++k + +l +eln++++ i++ + e ++ +  l+es++  ++++ +l +++++l++  e l++
  CCD24607.1 679 REASKRIISLEDELNDYTTIIQDKTRETDTMRRLLSESQNDEKTRQHQLTEKVTQLTNEKEKLDS 743
                 688999999*************************************************9999986 PP

  == domain 9  score: -0.4 bits;  conditional E-value: 0.37
  TPR_MLP1_2   9 eikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvk.elqalreelnelkaeiaelkaeaesakael 87 
                 e ++++   +e+++++++ q++l+++  ++++ ++k  +el ++ + ++ e+++ +   n+lk+e++ lk + +++ +e+
  CCD24607.1 705 ETDTMRRLLSESQNDEKTRQHQLTEKVTQLTNEKEKLDSELSLQTARINrEINDWKHITNDLKSEVHALKLREQQLLSEI 784
                 55566666677777777777888888888888888888888777777643688888888888888888877777766665 PP

  == domain 10  score: 6.3 bits;  conditional E-value: 0.0031
  TPR_MLP1_2  11 kslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesa 83 
                  +  e++ e+e+  ++l+e l k     +e q++ e+ + ++++  k+l+++ + + +l ++++ l++  e  
  CCD24607.1 799 VATHEDSGELEKLTSNLKEALSKADGKIQELQNSNEQLMHLNNDVNKKLERITKNYRTLSNQLNALREGKEIS 871
                 5566777788888888999999999999999999999999999999999999999999999999998877643 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.3     0.052   1.6e+02      57     103 ..      43     104 ..       2     107 .. 0.68
   2 ?  -12.9  34.1         6   1.8e+04      22      96 ..     157     251 ..     120     277 .. 0.64
   3 ?   -5.5  21.3         6   1.8e+04      23      80 ..     273     344 ..     257     419 .. 0.71
   4 ?    0.1  14.2      0.31   9.4e+02      11      86 ..     408     491 ..     377     498 .. 0.64
   5 !    6.2  17.7    0.0042        12      15     114 ..     486     597 ..     480     610 .. 0.67
   6 ?    4.1   6.3     0.019        55      25     106 ..     598     686 ..     589     690 .. 0.66
   7 !    5.6   5.8    0.0063        19      24      94 ..     688     756 ..     685     758 .. 0.83
   8 !   17.0   3.7   1.9e-06    0.0058       7     107 ..     749     852 ..     745     859 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.052
                 ..................-HHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  57 e.................keekeqelqkkeqelqqkqqqka.qelqkkqqellkpildkinkaik 103
                 +                 +++  +++q+k +++++ ++ k+   l++ ++e +++  +ki+k+++
  CCD24607.1  43 NsttdglqptgvgndsdgTQDLPKDIQAKLRKFEK-YELKYpALLNAYKNEKIRN--EKIEKILT 104
                 2445555555555555667777788**********.9999988888888888886..88888876 PP

  == domain 2  score: -12.9 bits;  conditional E-value: 6
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS..............-HHHHHH.........HHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHH CS
        OmpH  22 eqlekkfkklqaeleakekelqklqeelqkkakkl.e............keekeqe.........lqkkeqelqqkqqqka...qelqkkqqellkpil 95 
                 e+lekkf++ ++ l+++ +e ++++++ ++++ ++ +            k     e         l++k ++ q++++ k+   ++++k+  e+++++l
  CCD24607.1 157 EELEKKFNSERENLQREIDEAKEQRQNVERQKDTSsAdevdrlktlleeK-----EtmylseikiLEDKLAAAQKEKDDKQnklEKVEKQYDEEQAQLL 250
                 45666666666666666666666666666555554437788877664331.....13466666666666666666555555444444444444444444 PP

                 H CS
        OmpH  96 d 96 
                 +
  CCD24607.1 251 E 251
                 3 PP

  == domain 3  score: -5.5 bits;  conditional E-value: 6
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS...............-HHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  23 qlekkfkklqaeleakekelqklqeelqkkakkle..............keekeqelqkkeqelqqkqqqka 80 
                 ++ +k k+l+++l +k+k +q+lqe+l+k++++ e              k++   + qkk+++ ++k+q++a
  CCD24607.1 273 DITSKMKPLEEQLVEKAKTIQELQEQLNKSTSAIElptktvteteittlKTTPMSKNQKKRNRKKNKKQNNA 344
                 677888*********************977666537984444444433322222223333333333233332 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.31
                 HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.........-HHHHHH.HHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  11 leespegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e.......keekeqe.lqkkeqelqqkqqqkaqelqkk 86 
                 lee ++  +  ++le+++++l ael + +++l+++ +e +++ + + e        +++ +e    k++e+ +   ++ ++l+++
  CCD24607.1 408 LEELKDVSEKLAELEEEKNNLGAELSKTKEALTAKNTEVEEQREMMrEigndlvaAKDQIKEsSLGKNEEIAR-WTAQVENLKNE 491
                 5666677777778888888888888888888888888887666665445555555222223334444444444.22222444444 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0042
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS......-HHHHHH....HHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  15 pegkaaqeqlekkfkklqaeleakekelqklqeelqkkakkl.e....keekeqe....lqkkeqelqqkqqqka..qelqkkqqellkpildkinkai 102
                 +  k+ +e++ ++ k+ q ele+  ++l++++e+l++k +++ +    +e++ +e    +q+++++l ++++  +  +    ++++ +  + ++i+  +
  CCD24607.1 486 ENLKNENEKIISENKTKQSELEKNTAALTDEIEKLKTKYMDAsKrlkdNEARMNEalskIQNENNRLSNQMRDYNsvKTNVLQKEKTISYLENQIKGYT 584
                 566778888888889999999999999999999998888777667666555555576668888888888666666773333333335566778888888 PP

                 .HHHHHHTT-SEE CS
        OmpH 103 .kevakekgydlv 114
                  +++ +ek +d+ 
  CCD24607.1 585 eEKIKTEKSIDML 597
                 3345556666665 PP

  == domain 6  score: 4.1 bits;  conditional E-value: 0.019
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.....-HHHHHH.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  25 ekkfkklqaeleakekelqklqeelqkkakkle....keekeqe.......lqkkeqelqqkqqqkaqelqkkqqellkpildkinkaikeva 106
                 +++   l + l+ ++ke q+l ++ +k++++ e    ++    +       lq+k ++lq+ +++ +++  + +++  +++  k+++a k + 
  CCD24607.1 598 KRENGILTNRLDLLKKENQTLHDNVKKNSNSYEnylkENG---KlserlsiLQDKYDALQNIKSNSNEQTDSIKRQC-EELNVKLREASKRII 686
                 5555556677777778888888888654444324554222...13336777**********8888887766666553.347789999888775 PP

  == domain 7  score: 5.6 bits;  conditional E-value: 0.0063
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  24 lekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpi 94 
                 le++ +++ + +++k +e +++++ l +++++  +++++ +l +k+++l +++++   el  + + + ++i
  CCD24607.1 688 LEDELNDYTTIIQDKTRETDTMRRLLSESQND--EKTRQHQLTEKVTQLTNEKEKLDSELSLQTARINREI 756
                 78899999******************755555..8999999**********66666699988887777666 PP

  == domain 8  score: 17.0 bits;  conditional E-value: 1.9e-06
                 HHHHHHHSHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHH CS
        OmpH   7 vqkileespegkaaqeqlekkf...kklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqka...qelqkkqqellkpildkin 99 
                 +++i +e +++k + ++l+++    k ++++l ++ + l++l +++++k+ +  + e+  el+k+  +l+++++++    qelq+ +++l+  + + +n
  CCD24607.1 749 TARINREINDWKHITNDLKSEVhalKLREQQLLSEITTLNSLNDTMKRKSVA--THEDSGELEKLTSNLKEALSKADgkiQELQNSNEQLMH-LNNDVN 844
                 778999***************9999999******************955544..89999999999999999888888999999999999888.666666 PP

                 HHHHHHHH CS
        OmpH 100 kaikevak 107
                 k ++ + k
  CCD24607.1 845 KKLERITK 852
                 66666655 PP

>> DUF2291  Predicted periplasmic lipoprotein (DUF2291)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   5.7   0.00021      0.61      17     123 ..     220     326 ..     208     342 .. 0.68
   2 ?   -0.9   0.1      0.38   1.1e+03      51     109 ..     785     843 ..     773     853 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
                 XXXXX......X--HHHHHHHHHHHHHHHHHH--SEEHHHHHHHHHH-HHHHHHHHEB--TTSSEEEEEEEEEEEEEEEETTE........EEEE-SSS CS
     DUF2291  17 deaakaaeka.afdpeayvaeiWdekllpaleekAvdlaellaalkadpeaagekygkrvgissplvfaVkgtGtvvsvdtesragt..ltvdvdgddg 112
                 + aa+++ek  + +  + v++ +de++ + le++A ++ +l+++l+++ + +g+  +k++  +++lv   k   t+++ +++ +++t  +++ +++ ++
  CCD24607.1 220 KLAAAQKEKDdKQNKLEKVEKQYDEEQAQLLESQAREVTTLKTQLDESNKRLGDITSKMKPLEEQLVEKAK---TIQELQEQLNKSTsaIELPTKTVTE 315
                 44444433335899999********************************9999999888777776655555...4444444433333004444444455 PP

                 -SS-SEEEES- CS
     DUF2291 113 kadvkvqiGpv 123
                 ++ +++ ++p+
  CCD24607.1 316 TEITTLKTTPM 326
                 55555556655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.38
                 EEHHHHHHHHHH-HHHHHHHHEB-.-TTSSEEEEEEEEEEEEEEEETTE......EEEE- CS
     DUF2291  51 vdlaellaalkadpeaagekygkr.vgissplvfaVkgtGtvvsvdtesragtltvdvdg 109
                  +l+ l  ++k +  a++e  g+  + +s+ +  + k +G++++ ++++ +  + ++ d 
  CCD24607.1 785 TTLNSLNDTMKRKSVATHEDSGELeKLTSNLKEALSKADGKIQELQNSN-EQLMHLNNDV 843
                 5677778888888888888888888888888888888888888887775.7777766555 PP

>> DASH_Dad1  DASH complex subunit Dad1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.7      0.56   1.7e+03       2      16 ..     163     177 ..     162     183 .. 0.86
   2 ?    8.7   1.0   0.00066         2      10      35 ..     826     851 ..     821     859 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.56
   DASH_Dad1   2 FerqRdrliqeIaes 16 
                 F  +R+ l +eI e 
  CCD24607.1 163 FNSERENLQREIDEA 177
                 999*********886 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00066
   DASH_Dad1  10 iqeIaesmeevlnnlnaLNRsLEevi 35 
                 iqe+ +s e++++  n++N++LE ++
  CCD24607.1 826 IQELQNSNEQLMHLNNDVNKKLERIT 851
                 89*********************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (960 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4095  (0.228401); expected 358.6 (0.02)
Passed bias filter:                      662  (0.0369234); expected 358.6 (0.02)
Passed Vit filter:                       330  (0.0184059); expected 17.9 (0.001)
Passed Fwd filter:                       164  (0.00914719); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 4.97u 0.43s 00:00:05.40 Elapsed: 00:00:00.99
# Mc/sec: 2924.71
//
Query:       CCD24608.1  [L=1717]
Description: hypothetical protein NDAI_0D02940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-56  191.7   0.2    1.2e-56  191.7   0.2    3.3  5  RasGEF    RasGEF domain
    1.3e-18   67.2   2.1      8e-18   64.6   0.0    3.7  3  RasGEF_N  RasGEF N-terminal motif
    5.8e-08   32.5   0.0    1.4e-07   31.3   0.0    1.6  1  SH3_9     Variant SH3 domain
    1.6e-06   27.6   0.1    5.8e-06   25.8   0.1    2.1  1  SH3_1     SH3 domain
    0.00026   20.6   0.0    0.00066   19.3   0.0    1.7  1  SH3_2     Variant SH3 domain
  ------ inclusion threshold ------
      0.031   12.7   3.5      0.059   11.8   3.5    1.4  1  DUF1631   Protein of unknown function (DUF1631)


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   0.6         6   1.8e+04      94     129 ..      72     107 ..      68     114 .. 0.73
   2 ?   -2.1   0.0       1.2   3.7e+03      95     141 ..     533     558 ..     506     588 .. 0.53
   3 ?   -2.9   0.4       2.2   6.6e+03      81     132 ..     666     681 ..     635     726 .. 0.49
   4 ?   -3.0   0.0       2.4   7.2e+03     118     139 ..    1185    1206 ..    1147    1227 .. 0.77
   5 !  191.7   0.2     4e-60   1.2e-56       2     176 ..    1480    1660 ..    1479    1661 .. 0.96

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 6
      RasGEF  94 qsspvsrLkktweavskkslktleeleelmspennf 129
                 qss+ s Lk++ ++  k+s  +++++ el+s +n+ 
  CCD24608.1  72 QSSSSSSLKNSTDKGRKRSSSSFSSFAELLSLNNKN 107
                 677778888888888888888888887777665544 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.2
      RasGEF  95 sspvsrLkktweavskkslktleeleelmspennfknyrealkssa...s 141
                 s                        +++ + +++fk++ e l+s +   +
  CCD24608.1 533 S------------------------QKVQDLKKDFKKIAESLSSRNggeA 558
                 2........................2333334445555555544444443 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.2
      RasGEF  81 nNfnslmailsaLqsspvsrLkktweavskkslktleeleelmspennfkny 132
                  Nfn +m+ ++ +q                                     +
  CCD24608.1 666 ENFNKTMSYMTYIQ------------------------------------MV 681
                 23333333332222....................................22 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 2.4
      RasGEF  118 eleelmspennfknyrealkss 139 
                   +e+l+++++n+ ny +++ +s
  CCD24608.1 1185 IVEQLIESRENILNYVARMMQS 1206
                  4567777888888887777766 PP

  == domain 5  score: 191.7 bits;  conditional E-value: 4e-60
      RasGEF    2 lAeqltlieaelfskikpeellgsawsked....rspnveaviarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfnslmailsaLq 94  
                  lA+q  l+e+elf +i+ +e+l+ +w k+      sp+++++i+  n+l+n+++++i++e+++k+Rak+i +fi++a+  + lnN++s+ ai+s+L 
  CCD24608.1 1480 LAQQSALLEHELFTEITIFECLDRVWGKKYcdmgGSPHITKFISVANNLTNMISTTIIRERDIKQRAKLIDHFIQVAEASKALNNYSSMTAIISGLY 1576
                  8**************************999655445************************************************************* PP

      RasGEF   95 sspvsrLkktweavskkslktleeleelmspennfknyrealkssasskpciPflglyltdltfieegnpdtl..egk.iNfeKr 176 
                  ssp++rLkktwe v+++s+++l+el+elm++++nf nyr+ lks++ + pciPf+g+yl+dltf+++gnpd+l  + + iNf+Kr
  CCD24608.1 1577 SSPIFRLKKTWELVPENSKNLLKELNELMDSKKNFINYRQSLKSVK-DVPCIPFFGVYLSDLTFTHSGNPDFLpgSANmINFNKR 1660
                  *********************************************5.***************************96666*****7 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.2   6.6e+03      43      88 ..     136     192 ..     129     206 .. 0.44
   2 ?   -3.6   0.1       4.4   1.3e+04      62      86 ..    1225    1254 ..    1196    1267 .. 0.61
   3 !   64.6   0.0   2.7e-21     8e-18       1      95 [.    1272    1368 ..    1272    1378 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.2
    RasGEF_N  43 ekLierye...........inppnnlesdesnswnsksssnirlrvlsvlkewvenh 88 
                 ++L +r +           ++++++++s++s+s   +s+++++++ l+++ ++ + +
  CCD24608.1 136 SNLRQRPKnntrgqsdghlVSHSSKSSSSSSSSSSLESATKASINPLDIVISLYDFF 192
                 555555544333333333322222222222222223333335555555555555544 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.4
    RasGEF_N   62 s.....nswnsksssnirlrvlsvlkewve 86  
                        +s+n+++++++  r++++ + +v 
  CCD24608.1 1225 VndwsqESFNENENEEVDERTFDANRNLVP 1254
                  122333677777777777777776666665 PP

  == domain 3  score: 64.6 bits;  conditional E-value: 2.7e-21
    RasGEF_N    1 qvkagtlekLierLtskrlldddfletFLltyrsFttpaeLlekLieryeinppnnlesdesnswnsksssnirlrvlsvlkewvenhyy..dfsdd 95  
                  +vk+gt ++Lie+Lts++++d  ++ t+Llt+rs +t+ e+l +Li ry+i pp++l+ +e+n+w  k++ +++++v++++   +e++++   f++ 
  CCD24608.1 1272 RVKGGTKDALIEHLTSTEFVDHWYNVTMLLTFRSIFTTREFLFALICRYNIYPPEGLSFGEYNKWATKKAIPVKINVVRIMTIFLEQYWApgYFEEG 1368
                  59***************************************************************************************96556655 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.5e-11   1.4e-07      13      49 .]     206     247 ..     194     247 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 4.5e-11
       SH3_9  13 LsLqrGDvitvieesedgWlegs.....ltGrtGlvPanyve 49 
                 Ls+++++ i+v+e+  +gW++g+     ++ ++G++P+nyv+
  CCD24608.1 206 LSFPKNELIYVLEKNFSGWWDGIiissqNDVKRGWFPQNYVT 247
                 9*************88******866665588*********96 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1     2e-09   5.8e-06      11      47 ..     203     242 ..     186     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2e-09
                 TTBXEBSTTEEEEEEEECSSSEEEEEETTS...TEEEEEE CS
       SH3_1  11 sdELsfkkGDviivleksedgWwkgrlkgt...gkeGliP 47 
                  + Lsf k++ i vlek+ +gWw+g  +++    k+G++P
  CCD24608.1 203 NSQLSFPKNELIYVLEKNFSGWWDGIIISSqndVKRGWFP 242
                 589**********************9998888889***** PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.2e-07   0.00066      11      54 ..     201     246 ..     193     249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.2e-07
                 CGCCB--B-TTEEEEEE..EEEECTTEEEEEE...CCCE..EEEEGCGE CS
       SH3_2  11 edkseLsfkkGdvikvlslgskdsdgwwegev...gGrv..GlfPsslv 54 
                 + +s Lsf k+++i+vl   +k+  gww g     ++ v  G+fP ++v
  CCD24608.1 201 YTNSQLSFPKNELIYVL---EKNFSGWWDGIIissQNDVkrGWFPQNYV 246
                 34455************...99999*****76666555577******99 PP

>> DUF1631  Protein of unknown function (DUF1631)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   3.5     2e-05     0.059     228     376 ..      51     199 ..      22     207 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2e-05
     DUF1631 228 gaaeekeeeqkaPaaaaaaaagaaeaqasaaaaaegaae...lfsaLqqLLsqareaaaaaaqaassasgaearalssaeLlqa.Lselqqqaaaeaaa 322
                 +++ +++e+++ P++ a+a+++++++++ ++++++g ++    fs+ ++LLs  +++   ++  +ss+s++++ a +s++  ++ Ls l+q+++    +
  CCD24608.1  51 SNKDNENENEHDPTSIAHATSQSSSSSSLKNSTDKGRKRsssSFSSFAELLSLNNKNNNSKSG-KSSGSPSSRSANPSPSTSSVgLSNLRQRPK---NN 145
                 333444555555666666655555554444444443333555999999999988776666544.444455455555555555555********9...89 PP

     DUF1631 323 gaeasvedlreqllnllrqesgeaaaqalgqededvidlVamLFdfIlddrrlp 376
                 ++ +s+  l+++ ++   ++s+++  ++ +++  + +d+V  L+df  ++r+  
  CCD24608.1 146 TRGQSDGHLVSHSSKSSSSSSSSSSLESATKASINPLDIVISLYDFFPENRNST 199
                 9999*****************9999999999999***********988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1741  (0.0971052); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.14u 0.29s 00:00:01.43 Elapsed: 00:00:00.50
# Mc/sec: 10240.41
//
Query:       CCD24609.1  [L=564]
Description: hypothetical protein NDAI_0D02950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-76  257.6   0.2    1.4e-76  257.6   0.2    1.5  2  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    3.3e-07   30.2   0.3    7.4e-07   29.1   0.3    1.6  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.017   14.6   0.5        2.9    7.3   0.0    2.5  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)
          1    9.5   8.4        2.1    8.5   8.4    1.5  1  MAS20            MAS20 protein import receptor
        8.3    5.4   9.8         12    4.8   9.8    1.2  1  Atg14            Vacuolar sorting 38 and autophagy-related su


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   1.2       1.9   6.9e+03     175     197 ..      40      62 ..      39      74 .. 0.76
   2 !  257.6   0.2     4e-80   1.4e-76       3     313 ..     236     558 ..     234     559 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 1.9
                  HHHHHHHTS-SS--HHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 175 eaieklneigkdldkaderalvk 197
                  +a++kl+++++  +k++eral  
   CCD24609.1  40 KALKKLQKEQEKQKKKHERALQL 62 
                  68888888888888888888754 PP

  == domain 2  score: 257.6 bits;  conditional E-value: 4e-80
                  CHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.TEEE....-E-S-SHHHHHHHHHCTHSEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   3 elrlknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekekeff....aLtqspqlylellivagidrvfq 96 
                  ++rl+ r++dlrt   +++++++s v +++r++l++ +f+e++tP L  + +e+g+  F v       ++f    +L+qspq+ ++ liva +++vf+
   CCD24609.1 236 DTRLDARVIDLRTVTNQAIFKIQSGVCQLFREFLSNLKFTEVHTPKLLGAPSEGGSSVFEV-------SYFkgkaYLAQSPQFNKQQLIVADFEKVFE 326
                  799**********************************************************.......44445555********************** PP

                  EEEEE--S--BTTB-S-CEEEEEEEEET-SCHH.HHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS....EE-SSS.-EEEEHHHHHHHHHTS..... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxx.xxxxxxxxxxxxxxxx..... RF
  tRNA-synt_2  97 iaraFRaEdsrtdrhlaEFtqieaemsfieeed.imqvleelikslvkevlessakdiefvirrns....kdlkkp.fkrltykeaieklnei..... 183
                  i+++FRaE+s+t rh++EFt +++em+f e+ + +++vl +l+  +++e++++  k+ie v ++      k +k+  + r++yke ie l+       
   CCD24609.1 327 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHeVLDVLSDLFVFIFSELKKRFSKEIEIVRKQYPvedfKLPKDGkMVRIKYKEGIEMLRAAgkeig 424
                  *****************************98888******************999999999988777666333333488**********999999999 PP

                  .-SS--HHHHHHHHH....HS--SEEEEEEEBGGGSTTCBBBSTTSTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHHSSSGGGGHHHHHH CS
                  .xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 184 .gkdldkaderalvk....keknepvfvtdfPaelkpFyarkeeddkkltesyDllingvElvgGslRiedpeeleeklkskgldeeaeekfswylea 276
                    +dl++++e++l k    k +++++ + +fP +++pFy+  + +d++ ++syD++++g E+++G++Ri+d+e+l+e++k +gl+ ++   +++y++ 
   CCD24609.1 425 dFDDLSTENEKFLGKlvreKYDTDFYILDKFPLAIRPFYTMPDAEDPRYSNSYDFFMRGEEILSGAQRIHDHELLQERMKVHGLS-SEDPGLKDYCDG 521
                  9899********99988889999****************9999999***************************************.88999******* PP

                  HHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-XX CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 277 leyGapphgGlglGldRlvmlllgsesIrdviaFPkl 313
                  ++yG+pph+G g+Gl+R+vm+ l++++Ir +++FP+ 
   CCD24609.1 522 FSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRD 558
                  ***********************************95 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.3   2.1e-10   7.4e-07       1      75 [.     115     203 ..     115     204 .. 0.93

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 2.1e-10
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET........HHHHHHHTTS-TTSEEEEEEEEEECTTS.......SEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr........eeatklaenlkeGdvvrvtGrvkrrpgg.......elelkveeiel 75 
                      V +++rv++++ ++g+ ++f++lr  ++ iq  +          +++ k+  +l  +++v v+G vk+ ++         le+++++i  
       CCD24609.1 115 VLFRARVHNTR-QQGATLAFLTLRQQHDLIQGLVKVnnedgsisKQMVKWVGSLNLESIVLVRGIVKKVDEPiksatvqSLEVHITKIYT 203
                      56899*****9.*******************9999999*******************************77788889999*****99975 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2    0.0046        17     103     134 ..     323     355 ..     317     392 .. 0.67
   2 ?    7.3   0.0    0.0008       2.9     215     233 ..     533     551 ..     526     563 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0046
                   EEEEEEEEEBSST.-SSSB-SEEEEEEEEEEET CS
  tRNA-synt_2d 103 kiisigrvfRrda.vDathlaeFhqveglvvde 134
                   k++ ig vfR ++    +h+ eF+ +++ ++ e
    CCD24609.1 323 KVFEIGPVFRAENsNTHRHMTEFTGLDMEMAFE 355
                   89**********955566777887777644433 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0008
                   EEEHHHHHHHHHT-SSGHH CS
  tRNA-synt_2d 215 GlGveRlamlkygieDiRe 233
                   G+G+eR+ m+ +++++iR+
    CCD24609.1 533 GIGLERVVMFYLDLKNIRR 551
                   9*****************6 PP

>> MAS20  MAS20 protein import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.4   0.00057       2.1      23      94 ..      36     108 ..      33     130 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00057
       MAS20  23 pefkkklrerrkkqakaakeeeeaekaekkkkealeeakee.lptdaeevekfFleevqlGEellaqgeeeea 94 
                 p  kk l++ +k+q+k++k++e+a + +++k++  +ea  +   +d+  + + + + v++GE+ ++ +e +ea
  CCD24609.1  36 PLSKKALKKLQKEQEKQKKKHERALQLQQEKEQREKEALLNdTAKDNYGKGALVQSTVRTGEKRIKFNELDEA 108
                 556888888888888766666666555555543334444445779999***************9998555444 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   9.8    0.0034        12      28     137 ..      39     147 ..      37     193 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0034
       Atg14  28 rerlaklksekeslkkkiekalegkeeaeql.edkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqnel 125
                 ++ l+kl++e+e  kkk e+al+ ++e+eq+ ++++ n++ak +  k    ++  r+ e + k  +l++++++ k+ l + +  + +R++ + ++   l
  CCD24609.1  39 KKALKKLQKEQEKQKKKHERALQLQQEKEQReKEALLNDTAKDNYGKGALVQSTVRTGEKRIKFNELDEANDDGKEVLFRARVHN-TRQQGATLAFLTL 136
                 57899********************96665515667899999999999****************************999888777.5666666666666 PP

       Atg14 126 eerrkkqiaklq 137
                 ++ ++++i++l+
  CCD24609.1 137 RQ-QHDLIQGLV 147
                 55.455666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1865  (0.104021); expected 358.6 (0.02)
Passed bias filter:                      771  (0.043003); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 3892.85
//
Query:       CCD24610.1  [L=107]
Description: hypothetical protein NDAI_0D02960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.049   13.9   0.3      0.077   13.2   0.3    1.3  1  COX6B       Cytochrome oxidase c subunit VIb
       0.05   13.5   0.0       0.06   13.2   0.0    1.0  1  Arteri_env  Arterivirus envelope protein
       0.11   12.6   3.0       0.81    9.9   2.9    2.1  2  CHCH        CHCH domain
       0.17   12.2   2.6       0.43   10.9   2.6    1.7  1  Pet191_N    Cytochrome c oxidase assembly protein PET191
       0.53   10.7   3.4          5    7.5   0.7    2.2  2  COX17       Cytochrome C oxidase copper chaperone (COX17)


Domain annotation for each model (and alignments):
>> COX6B  Cytochrome oxidase c subunit VIb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.3   2.1e-05     0.077       9      46 ..      27      66 ..      20      74 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.1e-05
       COX6B  9 rkaCwearddyfkCldkkgeekae..kkeeqdekkCkaek 46
                 ++C++a  +y +C++  + e+a+  +   ++  kC+  +
  CCD24610.1 27 DNECYDAMVKYLNCMKLVKGENAPncRLLAKSYLKCRMDH 66
                589*************966656663433344445566555 PP

>> Arteri_env  Arterivirus envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.7e-05      0.06      36     106 ..      22      95 ..      20     105 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
  Arteri_env  36 fplaeGktslelslnytlcklclvseaa.aeilepgkslfcrigddrceesdsdeldl..svpdgvdllklegy 106
                 fpl + +  ++ ++ y  c+     e+a + +l   + l cr+ ++  + ++ ++l+l  + p++ +++k++  
  CCD24610.1  22 FPLDHDNECYDAMVKYLNCMKLVKGENApNCRLLAKSYLKCRMDHQLMDRDEWEHLGLpkDQPPQQQQVKSDSS 95 
                 9******************988777776256788899999*****99887777777653377888888877654 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.5    0.0065        23      21      34 ..      29      42 ..      25      43 .. 0.88
   2 ?    9.9   2.9   0.00023      0.81       1      34 [.      30      64 ..      30      65 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0065
                TTHHHHHHHHHHHC CS
        CHCH 21 kCrkefeafkeCvk 34
                +C + + ++ +C+k
  CCD24610.1 29 ECYDAMVKYLNCMK 42
                69999*******97 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00023
                THHHHHHHHHHHHHCTSS.TTTTHHHHHHHHHHHC CS
        CHCH  1 CgeefkeylkClkdnsde.fskCrkefeafkeCvk 34
                C+  + +yl C+k    e    Cr + + + +C++
  CCD24610.1 30 CYDAMVKYLNCMKLVKGEnAPNCRLLAKSYLKCRM 64
                7777999******988877***************9 PP

>> Pet191_N  Cytochrome c oxidase assembly protein PET191
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.6   0.00012      0.43      20      57 ..      30      66 ..      25      73 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
    Pet191_N 20 CvkkerktpkeClkekaeelpeeCkqlrkayfeCkrgl 57
                C+     +  +C+k  + e   +C+ l k+y +C+++ 
  CCD24610.1 30 CYDAM-VKYLNCMKLVKGENAPNCRLLAKSYLKCRMDH 66
                55544.45678***99999999*************974 PP

>> COX17  Cytochrome C oxidase copper chaperone (COX17)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.7    0.0014         5      27      42 ..      27      42 ..      21      44 .. 0.84
   2 ?    3.9   0.1     0.019        67      23      40 ..      45      62 ..      43      67 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0014
       COX17 27 eekCkelieahkaCmr 42
                +++C + + ++ +Cm+
  CCD24610.1 27 DNECYDAMVKYLNCMK 42
                349************8 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.019
       COX17 23 sgaeeekCkelieahkaC 40
                +g+++++C+ l + + +C
  CCD24610.1 45 KGENAPNCRLLAKSYLKC 62
                676777************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      196  (0.010932); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 808.52
//
Query:       CCD24611.1  [L=919]
Description: hypothetical protein NDAI_0D02970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.2e-37  127.2   6.7    1.3e-34  119.8   0.1    4.2  3  Pkinase         Protein kinase domain
    2.6e-11   43.3   0.8    1.3e-10   41.1   0.0    2.5  2  Pkinase_Tyr     Protein tyrosine kinase
     0.0078   15.6   0.1      0.021   14.2   0.1    1.7  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.078   12.7   3.8         62    3.3   9.1    2.8  2  EMC3_TMCO1      Integral membrane protein EMC3/TMCO1-like
      0.082   13.1   0.3       0.26   11.5   0.3    1.9  1  DUF3420         Domain of unknown function (DUF3420)
       0.11   12.4   9.0        0.4   10.7   9.0    1.9  1  Rpp20           Rpp20 subunit of nuclear RNase MRP and P
       0.19   10.8   6.3       0.39    9.8   6.3    1.5  1  Roughex         Drosophila roughex protein
       0.29    9.5   1.8       0.21    9.9   0.1    1.7  2  Mem_trans       Membrane transport protein
        2.2    7.1  12.1        3.6    6.3  12.1    1.2  1  Androgen_recep  Androgen receptor


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   1.4      0.94   1.9e+03      38      50 ..     375     387 ..     351     445 .. 0.57
   2 !    6.9   0.0    0.0017       3.5       2      21 ..     476     495 ..     475     500 .. 0.85
   3 !  119.8   0.1   6.6e-38   1.3e-34      21     264 .]     523     905 ..     513     905 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.94
                 CHHHHHHHHHHHH CS
     Pkinase  38 kkkkekkvlrEik 50 
                 +++++++ ++E +
  CCD24611.1 375 QQQQQQQQQQEQQ 387
                 1111111222211 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0017
                 EEEEEEEEESSEEEEEEEET CS
     Pkinase   2 ekleklGeGsfGkVykavek 21 
                 + +  lG+G+fGkV+k++++
  CCD24611.1 476 KSIGLLGQGTFGKVLKCIDA 495
                 56788************976 PP

  == domain 3  score: 119.8 bits;  conditional E-value: 6.6e-38
                 TTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS......CTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHH.HHSS--HHHHHHHHHHHHHHH CS
     Pkinase  21 ketgkivAvKkikkekakkkkekkvlrEikilkklk......hpnivrlyevfeekdely.lvleyveggeladlle.rkgslseeeakkiakqilegl 111
                 ++++k vA+K+i+  ++  +   ++ +E+++l+++         + + l e+f  k++++ l l y e+++     +     ++ ++++ ia+q+++++
  CCD24611.1 523 RRRKKLVAIKIIRAVDRYRE---AAKTELRVLQTIMendphgQYQCLILNEAFDYKNHIFvLSLIYSENQSTILCATnGIARFPGSHIQAIARQLIRSM 618
                 67899*******99988774...46788888888765556333457778899999999883555566655533333323344***************** PP

                 HHHHHTTEE-SS-SGGGEEEET................................TTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHH CS
     Pkinase 112 eylHskgiiHrDlKpeNiLide................................kgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkv 178
                 ++lH+ giiH DlKpeNiL+ +                                + e+Ki+DFG a  +++ +    ++ t++Y+APE++ + + s ++
  CCD24611.1 619 AFLHDLGIIHTDLKPENILLCDeeyiekdlpieilaclskrrreasggrrkilkSPEIKIIDFGSAVFYNEYH--PPVISTRHYRAPEIVLGLGWSFPC 715
                 ******************998448***************999999888877776666************9976..7899******************** PP

                 HHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT...SHH...HHHTTS......................................... CS
     Pkinase 179 DvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg...etkeklpeasei......................................... 233
                 D+Ws++++l+el+ g+ +++ ++       +l+++ ++++i g   ++k+  +  +++                                         
  CCD24611.1 716 DIWSIACVLVELIIGESLYPIHE-------NLEHMAMMQRINGatfPKKLIEKMFYKVdhklgnlpsdlnttvvkhfnrstyqlvwpevnkktgnivtk 807
                 ********************333.......333333334444433333333333333355568999999****************************** PP

                 ...................................................................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ...................................................................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                                                                       ++dll+k+++ dp+kR+ta+e+l+h+++
  CCD24611.1 808 eksirrvkdscerldifiskflkldygedfeinwdlsiernweiiqkisawngtektqnvdketflfWYWFIDLLRKMFEFDPTKRITAMEALDHEWF 905
                 *************************************************************************************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   1.4         7   1.4e+04      40      47 ..     374     381 ..     359     399 .. 0.44
   2 !   41.1   0.0   6.3e-14   1.3e-10       6     234 ..     480     762 ..     475     768 .. 0.81

  Alignments for each domain:
  == domain 1  score: -5.0 bits;  conditional E-value: 7
                  SSHHHHHH CS
  Pkinase_Tyr  40 ateeekee 47 
                  ++++++++
   CCD24611.1 374 QQQQQQQQ 381
                  11111111 PP

  == domain 2  score: 41.1 bits;  conditional E-value: 6.3e-14
                  EEEEESSEEEEEEEEET........................TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE....SSS CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkg........................ekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct....kee 74 
                   lG+G+fGkV ++                            + ++++  Va+K++++  +   +e+  +e+++++++ +++   ++  +++    + +
   CCD24611.1 480 LLGQGTFGKVLKCIDAApssssssvpssiplyhttsninsvDIRRRKKLVAIKIIRAVDRY--REAAKTELRVLQTImENDPHGQYQCLILneafDYK 575
                  5889999999988777677788888888888888888877777788999******653333..45666666666666322222222222223334788 PP

                  SEEEEEE--TTEBHHHHHHHT.CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE................................T CS
  Pkinase_Tyr  75 pllivteyvkgGdLlkfLrkk.ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse................................n 139
                  ++++v+ ++ + + ++ L ++   +++  +++  +a q+ + m++L++  ++H dl   N+Ll++                                +
   CCD24611.1 576 NHIFVLSLIYSENQSTILCATnGIARFPGSHIQAIARQLIRSMAFLHDLGIIHTDLKPENILLCDeeyiekdlpieilaclskrrreasggrrkilkS 673
                  8999*****999999999877145788889999*******************************99******************************99 PP

                  TEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHH CS
  Pkinase_Tyr 140 kvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeel 234
                    +ki DfG a      +ey  +       ++ apE++     +   D+Ws + +l E++  ges yp  +n e ++++++ +  + p+k  e++
   CCD24611.1 674 PEIKIIDFGSAVFY---NEY--HPPVISTRHYRAPEIVLGLGWSFPCDIWSIACVLVELII-GESLYPIHENLEHMAMMQRINGATFPKKLIEKM 762
                  9********88877...333..34556677899***************************9.************999999988888888776655 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.1e-05     0.021     115     155 ..     602     642 ..     525     654 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
         Kdo 115 laeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 ++++  +a+ +++ r +a lh++g+ H+dl + nill  ee
  CCD24611.1 602 FPGSHIQAIARQLIRSMAFLHDLGIIHTDLKPENILLCDEE 642
                 56666677777888888889****************98876 PP

>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.2   3.9e+02      47      47 ..     119     119 ..      42     247 .. 0.47
   2 ?    3.3   9.1     0.031        62      36      87 ..     336     385 ..     327     454 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.2
  EMC3_TMCO1  47 e 47 
                 +
  CCD24611.1 119 I 119
                 0 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.031
  EMC3_TMCO1  36 kllidkkkmekeqkrekelqkrarelqkngdklklkklekrqeelmedqsem 87 
                  +  + +  + ++ ++k l+ r+++l+ +++++k+k+ +++q++ +++q++ 
  CCD24611.1 336 TNNNYNN--STTKSIKKILLLRYKKLTTSSKNKKKKQQQQQQQQQQQQQQQE 385
                 4443444..78899999999******99888777777666666666665543 PP

>> DUF3420  Domain of unknown function (DUF3420)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   0.00013      0.26       3      23 ..     640     660 ..     639     677 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
     DUF3420   3 dreiLEKeLPievlakIkelR 23 
                 d e++EK LPie+la +  +R
  CCD24611.1 640 DEEYIEKDLPIEILACLSKRR 660
                 789***********9986655 PP

>> Rpp20  Rpp20 subunit of nuclear RNase MRP and P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   9.0    0.0002       0.4      15      68 ..     342     396 ..     332     402 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0002
       Rpp20  15 msavkRvqklLeqaekrataslal.eqkkkeekkklealekkeeelkkeeVfvka 68 
                  s  k ++k+L    k+ t+s ++ ++k+++++++++++++++e+++++++++ a
  CCD24611.1 342 NSTTKSIKKILLLRYKKLTTSSKNkKKKQQQQQQQQQQQQQQQEQQHQKQILLSA 396
                 5899*******99888888888773555666667777778888889999999887 PP

>> Roughex  Drosophila roughex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   6.3    0.0002      0.39     268     328 ..     360     427 ..     302     451 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0002
     Roughex 268 dasepdlpdqnkeedkdeqeqqaeqeeqaqqqaeea...........pvssdistalketnppaepivgern 328
                  +s  +   +++++++++q+qq +qe+q+q+q               p+ ++ist+  +tn        + +
  CCD24611.1 360 TTSSKNKKKKQQQQQQQQQQQQQQQEQQHQKQ---IllsastsapssPT-TSISTTSSKTNNNNSNNNNNND 427
                 44444444444444455555555555555555...03445667755444.5677777777755444444444 PP

>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.2       1.3   2.5e+03     163     205 ..     244     282 ..     240     303 .. 0.76
   2 ?    9.9   0.1   0.00011      0.21     160     227 ..     358     423 ..     343     764 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.3
   Mem_trans 163 aasivsikvdsdvvsldgrkpleteaeikedgklhvtvrksna 205
                 a+ i  ++ d+++++l g+      +  + ++++h++v++s +
  CCD24611.1 244 ANFISRKQNDDELLHLVGSS----AKTLDGNKSIHLNVVHSMS 282
                 56678889999999999999....5566777899999988765 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00011
   Mem_trans 160 pdtaasivsikvdsdvvsldgrkpleteaeikedgklhvtvrksnasrsdivssstprpsnltnaeiy 227
                 + t+ s +++k++++  ++++++  ++++e ++++++ ++ + s  s++  + s+t+++ n  n    
  CCD24611.1 358 KLTTSSKNKKKKQQQQQQQQQQQ--QQQQEQQHQKQILLSASTSAPSSPTTSISTTSSKTNNNNSNNN 423
                 44556666666666655555555..5666667999999999999999988888555555444443333 PP

>> Androgen_recep  Androgen receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  12.1    0.0018       3.6     190     237 ..     370     417 ..     356     430 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0018
  Androgen_recep 190 lqqqqqehhhqqhqhqqqqqqeaavvedsssgrareaagasasskdny 237
                      qqqqq++++qq+q++qq+q++  +++ +s+  +  ++ +++ssk n 
      CCD24611.1 370 QQQQQQQQQQQQQQQEQQHQKQILLSASTSAPSSPTTSISTTSSKTNN 417
                     233334434444444555566667778888888888899999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4322  (0.241062); expected 358.6 (0.02)
Passed bias filter:                      708  (0.0394891); expected 358.6 (0.02)
Passed Vit filter:                       204  (0.0113782); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.46u 0.35s 00:00:01.81 Elapsed: 00:00:00.55
# Mc/sec: 4996.58
//
Query:       CCD24612.1  [L=1491]
Description: hypothetical protein NDAI_0D02980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-25   86.6   5.2    8.1e-12   44.5   0.4    2.7  2  GIT_SHD   Spa2 homology domain (SHD) of GIT


Domain annotation for each model (and alignments):
>> GIT_SHD  Spa2 homology domain (SHD) of GIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.5   8.5e-16   1.5e-11       1      28 [.      67      94 ..      67      95 .. 0.97
   2 !   44.5   0.4   4.5e-16   8.1e-12       1      29 []     127     155 ..     127     155 .. 0.97

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 8.5e-16
     GIT_SHD  1 ARqKLarLsnkqFeeLvtDVydEldRRe 28
                AR KL++Ls++qF+eL+tDV dEl+RR+
  CCD24612.1 67 ARAKLLKLSSSQFYELSTDVSDELQRRI 94
                9**************************7 PP

  == domain 2  score: 44.5 bits;  conditional E-value: 4.5e-16
     GIT_SHD   1 ARqKLarLsnkqFeeLvtDVydEldRRet 29 
                 ARqKLa+Ls+++F++Lv D+++E++RR++
  CCD24612.1 127 ARQKLANLSQTRFNDLVDDILFEIKRRGY 155
                 9**************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2049  (0.114284); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.42u 0.34s 00:00:01.76 Elapsed: 00:00:00.58
# Mc/sec: 7716.92
//
Query:       CCD24613.1  [L=396]
Description: hypothetical protein NDAI_0D02990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00083   19.6   0.1      0.059   13.7   0.1    2.8  2  TPR_12           Tetratricopeptide repeat
     0.0017   17.9  18.0     0.0017   17.9  18.0    1.6  2  SDA1             SDA1
     0.0032   16.9   0.0      0.077   12.5   0.0    2.8  3  SHNi-TPR         SHNi-TPR
  ------ inclusion threshold ------
      0.078   12.8   4.3        1.6    8.7   0.0    3.6  4  TPR_1            Tetratricopeptide repeat
       0.36   10.8   3.0        0.6   10.1   3.0    1.3  1  AP-5_subunit_s1  AP-5 complex subunit sigma-1
       0.61   10.5   5.2         12    6.4   0.0    4.2  5  TPR_8            Tetratricopeptide repeat
        1.2    6.9   9.7        1.8    6.3   9.7    1.2  1  Ycf1             Ycf1
        3.7    7.2  18.9       0.44   10.2  14.8    1.6  2  DUF5523          Family of unknown function (DUF5523)


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.071   1.6e+02      19      55 ..      33      69 ..      16      75 .. 0.54
   2 !   13.7   0.1   2.6e-05     0.059      25      76 ..     213     263 ..     210     264 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.071
      TPR_12 19 ydeAlellekaleiarrllGpdhpltattlrnLgrly 55
                y++ l+ l k +e+    ++++ + +a+++  +++++
  CCD24613.1 33 YAKILDSLIKGRELDDVDFNKEDLIVARYMVSMAQCL 69
                3444444444444444445555555555555555555 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 2.6e-05
      TPR_12  25 llekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaiae 76 
                 l eka+e+++++ G +  + + +   +g++ ++++ +e A++ ++ al+ ++
  CCD24613.1 213 LAEKAYELYNKS-GSYCQESIDASKIIGDINLEWESFETAVDCYKTALKTYQ 263
                 679******888.99*********************************9997 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9  18.0   7.5e-07    0.0017      91     181 ..      90     208 ..      16     244 .. 0.51
   2 ?   -2.3   0.3         1   2.3e+03     305     313 ..     350     358 ..     335     392 .. 0.53

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 7.5e-07
        SDA1  91 eeedsddeddeedwevesdddseedseggwidvesdee..............eieesdesedeeeeeeeeeekeekeeeeeeee....eeeeeeeeeee 171
                  +ed+d+edd  +++ + +++s +d +g+    +sd+e              e    +e+e+ee++++ eeek+  ++e+++ +    e+eee+   e+
  CCD24613.1  90 ADEDDDNEDD--NDDGSPSSHSGSDIDGE----DSDNEgkptlnktffqfdhE----EEEEEEEDDDT-EEEKKGTRKENKQFNesniESEEESA-LES 176
                 2333233333..33333333455677777....56666889999998855332....32222222222.22222222222222112221111111.111 PP

        SDA1 172 eeekekkkk........................k 181
                 ee +e+  +                        +
  CCD24613.1 177 EEAEEE--EdindgdnsimkckhfsdyltgdflM 208
                 111112..12344555556666666666665541 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1
        SDA1 305 ttNkeKark 313
                 + Nk+K+rk
  CCD24613.1 350 KNNKNKKRK 358
                 333333333 PP

>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.25   5.6e+02      20      35 ..      22      37 ..      21      39 .. 0.83
   2 !   12.5   0.0   3.4e-05     0.077       7      36 ..     238     267 ..     235     268 .. 0.93
   3 ?   -0.9   0.0      0.53   1.2e+03       8      16 ..     312     320 ..     312     320 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.25
    SHNi-TPR 20 AveDlrkaLeLreqll 35
                A +D++ka e++ ++l
  CCD24613.1 22 ANKDFTKAAEIYAKIL 37
                779*****99998876 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 3.4e-05
    SHNi-TPR   7 LGEislEnenFpqAveDlrkaLeLreqllp 36 
                 +G+i+lE e F++Av  +++aL+ ++ +++
  CCD24613.1 238 IGDINLEWESFETAVDCYKTALKTYQRVYN 267
                 7**********************9999887 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.53
    SHNi-TPR   8 GEislEnen 16 
                 +E++l++en
  CCD24613.1 312 AELGLWAEN 320
                 7*******9 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.026        57       7      28 ..      16      37 ..      13      38 .. 0.87
   2 ?   -2.1   0.2       1.8     4e+03      18      26 ..     215     223 ..     215     224 .. 0.82
   3 ?    8.7   0.0   0.00072       1.6       7      29 ..     238     260 ..     232     264 .. 0.82
   4 ?   -2.1   0.0       1.8     4e+03      19      27 ..     279     287 ..     279     288 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.026
                HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1  7 lGnayfklgkydeAleyyekAL 28
                +G  y  ++++ +A e y k L
  CCD24613.1 16 RGTKYTANKDFTKAAEIYAKIL 37
                7999**********99998766 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.8
                 HHHHHHHHH CS
       TPR_1  18 deAleyyek 26 
                 ++A e y+k
  CCD24613.1 215 EKAYELYNK 223
                 789999998 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00072
                 HHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   7 lGnayfklgkydeAleyyekALe 29 
                 +G + ++ + ++ A+++y+ AL+
  CCD24613.1 238 IGDINLEWESFETAVDCYKTALK 260
                 56667777889***********8 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.8
                 HHHHHHHHH CS
       TPR_1  19 eAleyyekA 27 
                 eA +y+e++
  CCD24613.1 279 EAMKYCEEV 287
                 89****985 PP

>> AP-5_subunit_s1  AP-5 complex subunit sigma-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.0   0.00027       0.6      21      78 ..     128     186 ..     118     227 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00027
  AP-5_subunit_s1  21 srvfgae.ekdeseeereeadeeerllrkeqiavvarqvksecalkrqasgrpvvedll 78 
                       ++f+ + e++e+eee+++++ee++  rke+ ++++ +++se +   + ++++  ed++
       CCD24613.1 128 KTFFQFDhEEEEEEEEDDDTEEEKKGTRKENKQFNESNIESEEESALESEEAEEEEDIN 186
                      56788775677778888888999999***********7777665555444444345444 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.28   6.3e+02      11      28 ..      20      37 ..      17      39 .. 0.84
   2 ?   -2.0   0.1       2.7   6.1e+03      21      25 ..     218     222 ..     212     234 .. 0.60
   3 ?    6.4   0.0    0.0053        12       7      29 ..     238     260 ..     237     263 .. 0.93
   4 ?    1.8   0.0      0.16   3.5e+02      19      33 ..     279     293 ..     279     294 .. 0.91
   5 ?   -2.8   0.0       4.7     1e+04      24      34 .]     299     309 ..     299     309 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.28
                HHHTT-HHHHHHHHHHHH CS
       TPR_8 11 ylklgdyeeAkeyyekal 28
                y   +d+ +A e y k l
  CCD24613.1 20 YTANKDFTKAAEIYAKIL 37
                667899999999999876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.7
                 HHHHH CS
       TPR_8  21 keyye 25 
                  e y+
  CCD24613.1 218 YELYN 222
                 33333 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0053
                 HHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekale 29 
                 +g+i l+ + +e A+ +y+ al+
  CCD24613.1 238 IGDINLEWESFETAVDCYKTALK 260
                 7999*****************98 PP

  == domain 4  score: 1.8 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHH CS
       TPR_8  19 eAkeyyekaleldpd 33 
                 eA++y+e+++ ++p+
  CCD24613.1 279 EAMKYCEEVTGAKPS 293
                 8*********99985 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 4.7
                 HHHHHHHHHH. CS
       TPR_8  24 yekaleldpdn 34 
                 y k +++d+dn
  CCD24613.1 299 YLKQISIDEDN 309
                 7899****986 PP

>> Ycf1  Ycf1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   9.7   0.00081       1.8     234     320 ..     134     223 ..     122     250 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00081
        Ycf1 234 eteereeseeetdveiekasetkgtkqeqersteedpspslfseekedldkideteeirvngk...ekikdefefhlketcyknsplyet 320
                 + ee ee+ee+ d e ek+  +k+ kq +e+  e +  ++l see e+ + i++ ++  ++ k   + +  +f +h  + + k   ly++
  CCD24613.1 134 DHEEEEEEEEDDDTEEEKKGTRKENKQFNESNIESEEESALESEEAEEEEDINDGDNSIMKCKhfsDYLTGDFLMHSSHLAEKAYELYNK 223
                 3467788889999**************99999999*************999998887666665222556667766666666666666655 PP

>> DUF5523  Family of unknown function (DUF5523)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  14.8    0.0002      0.44      63     129 ..     129     194 ..      90     222 .. 0.75
   2 ?   -3.8   0.1       3.8   8.4e+03     148     163 ..     352     366 ..     340     389 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0002
     DUF5523  63 nfftfnfdpepeeseekkkkkekeekeeeeeegeeeeeeeeeeeeeeeekdeeellvkkeeeeflld 129
                 +ff+f+ ++e+ee+e+ ++++ek+ +++e+++ +e++ e+eee+  e+e+ eee+   ++ ++ +++
  CCD24613.1 129 TFFQFDHEEEEEEEEDDDTEEEKKGTRKENKQFNESNIESEEESALESEEAEEEEDI-NDGDNSIMK 194
                 689999999988888888888888888888888887666666655555555555434.456666655 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 3.8
     DUF5523 148 erlkkekellFvPSlr 163
                 ++ +k++++ + PS++
  CCD24613.1 352 NK-NKKRKTQWLPSVS 366
                 22.2223333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1910  (0.106531); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 2579.06
//
Query:       CCD24614.1  [L=283]
Description: hypothetical protein NDAI_0D03000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-26   93.0  15.2    2.2e-26   92.7  15.2    1.1  1  UPF0121   Uncharacterised protein family (UPF0121)


Domain annotation for each model (and alignments):
>> UPF0121  Uncharacterised protein family (UPF0121)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7  15.2   1.3e-30   2.2e-26      14     230 ..      33     252 ..      20     261 .. 0.85

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 1.3e-30
     UPF0121  14 kankielalwltrlltllftvlyliplflsssysaYykallanaatsalrlhqrl..pqlrlsreyle...rllledsvhyLlysliFlfsaPvtlall 107
                  ++ +++ ++l + +tl+ ++ y++ + ++  +s+Y+ a+  +  ++ ++++q+   ++ + s+  ++   ++l  +++ y++++l ++  + +++al+
  CCD24614.1  33 LTKSLQFYWFLGHAITLFASFIYFFTFSFK--QSWYRIAFFGALQSFGVLIYQQQflSKSTTSKPAASeevQILEYENILYFILALTWISTPKLSIALV 129
                 56789********************97777..89*******************87667777777666433368889*********************** PP

     UPF0121 108 PvflfallHaasytktlldvlgsnslvvarll.kvislvesqaeniLrliAlieivlmpllivlll.lgkaslllpllYyqfLklRYsSrrnPytreaf 204
                 P++ f++lH++sy+++ l        ++ +++  + ++ e  +e+ ++++A  e+++  +li+ +l ++ +s + +++Y  fLk+ +    + y+ ++f
  CCD24614.1 130 PYIAFSTLHFSSYLQSTLLPKLFPGATADKVSsYISKFHECYNEKSMYWVASGELLIECILILRALlFFPKSWIVLIIYSLFLKVKFE--LSKYSTTVF 226
                 ***************999844444444556663446777888999****************9976515788*****************..********* PP

     UPF0121 205 seLrvlletlanhpscPavirsliek 230
                 ++ rv ++ +++hp +P+ i+++++ 
  CCD24614.1 227 AQWRVIFDGIISHPMVPPQIKKAYNF 252
                 **********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       626  (0.0349155); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2037.28
//
Query:       CCD24615.1  [L=778]
Description: hypothetical protein NDAI_0D03010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00023   21.3   0.0    0.00058   20.0   0.0    1.6  1  rve       Integrase core domain
  ------ inclusion threshold ------
        3.8    7.7   7.2       0.95    9.7   3.2    2.1  2  CH        Calponin homology (CH) domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   6.5e-08   0.00058      23      96 ..     261     333 ..     240     338 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 6.5e-08
         rve  23 kayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsf 96 
                 k  +l + d +s+ ++ +al+ e+da+++l +le+++       p+ ++ Dn++ ++++++++flad++i+v f
  CCD24615.1 261 KNAILYIGDYHSGAVWLFALDGEEDATDILLVLEMFLNVVLIT-PKHIQVDNQKIFRDENIAKFLADNNIEVVF 333
                 667778889*************************999999997.**************************9987 PP

>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1      0.89   7.9e+03      44      70 ..     302     325 ..     293     334 .. 0.71
   2 ?    9.7   3.2   0.00011      0.95       4      82 ..     348     422 ..     345     443 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.89
                 HSTTTSSGGGSTTTHHHHHHHHHHHHH CS
          CH  44 lapglvdkkklnksefkkleNinlald 70 
                 ++p+++++++    +  + eNi+++l 
  CCD24615.1 302 ITPKHIQVDNQ---KIFRDENIAKFLA 325
                 46777777766...6777777777775 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTS CS
          CH   4 kkellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnksefkkleNinlaldvaekklgvpkvl 82 
                 k+ +++Wi +h +++++++   + ++   DG      +n+ +p + d ++l+ +++ + +Nin+a +  ++++g+++++
  CCD24615.1 348 KEVITTWIGEHKGHSINQR--PNTTSTVTDGANIE--ANNAQPATSDNSSLTSQQTSNNNNINYATNNTNNNVGMNTIN 422
                 7899********9987776..7*********9986..59***********************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1604  (0.089464); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.49
# Mc/sec: 4728.95
//
Query:       CCD24616.1  [L=392]
Description: hypothetical protein NDAI_0D03020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2232  (0.124491); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.48
# Mc/sec: 2477.17
//
Query:       CCD24617.1  [L=255]
Description: hypothetical protein NDAI_0D03030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-87  291.2   5.3    4.3e-87  290.9   5.3    1.0  1  Ribosomal_S3Ae   Ribosomal S3Ae family
  ------ inclusion threshold ------
      0.034   13.7   0.0       0.13   11.8   0.0    1.9  2  Abhydro_lipase   Partial alpha/beta-hydrolase lipase region
      0.045   13.8   0.2      0.061   13.3   0.2    1.2  1  HIGH_NTase1_ass  Cytidyltransferase-related C-terminal region


Domain annotation for each model (and alignments):
>> Ribosomal_S3Ae  Ribosomal S3Ae family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.9   5.3   7.2e-91   4.3e-87       3     202 .]      17     221 ..      15     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: 290.9 bits;  conditional E-value: 7.2e-91
                     ----S-TCCSEEEEEEEB-TTSSSSEEEEEEEE--BSSSESHHSHTT-EEEEESHHHHTCSHTSSSEEEEEEEEEEESSEEEEEEEEEEE-HHHH CS
  Ribosomal_S3Ae   3 kkkvvDkfkkKeWydvkaPslfgkreiGktlvnrtqgtkiaseklkgrvvevslaDLtndekeqafrklklkieevqgknaltnFkgmeltrDkl 97 
                     kkkvvD+f++KeW+d+kaPs+f++r++Gktlvn+++g k+a+++lkgrvvev laDL+++e +++frk+kl+++evqgkn+ltnF+gm++t+Dkl
      CCD24617.1  17 KKKVVDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSAADALKGRVVEVCLADLQGSE-DHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKL 110
                     89**********************************************************8.668****************************** PP

                     HHH--SSB-EEEEEEEEEESSSEEEEEEEEEEE-ST.T.....B---HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHTTTHHHHHHHHHHTTTS CS
  Ribosomal_S3Ae  98 rslvrkwsslIeaivdvktkDgyllrvfvvafTkkr.n.....sYakssqkkaIrkkmveilteeaseldlkelvkklipeslgkeiekeakkIy 186
                     rs+vrkw++lIea+v+vkt+D+y+lrvf++afT+k+ n      Ya+ss+++aIrk++ eilt+e+++++l +l +klipe ++keie+++k+I+
      CCD24617.1 111 RSMVRKWQTLIEANVTVKTADDYVLRVFAIAFTRKQaNqvkrtAYAQSSHIRAIRKVISEILTREVQNCTLAQLTSKLIPEVINKEIENATKDIF 205
                     ************************************989******************************************************** PP

                     -EEEEEEEEEEEEE-S CS
  Ribosomal_S3Ae 187 plrnveirKvkvlkkP 202
                     pl+nv+irKvk+lk+P
      CCD24617.1 206 PLQNVHIRKVKLLKQP 221
                     **************98 PP

>> Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.2e-05      0.13      14      40 ..     124     150 ..     111     167 .. 0.78
   2 ?   -1.5   0.0      0.33     2e+03      18      34 ..     200     216 ..     195     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.2e-05
  Abhydro_lipase  14 eheVqTeDGYiLtlhRipaknksvssk 40 
                     + +V+T D+Y+L ++ i   +k+ ++ 
      CCD24617.1 124 NVTVKTADDYVLRVFAIAFTRKQANQV 150
                     468**************9999643333 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.33
  Abhydro_lipase  18 qTeDGYiLtlhRipakn 34 
                      T+D + L+  +i++ +
      CCD24617.1 200 ATKDIFPLQNVHIRKVK 216
                     69999999999998755 PP

>> HIGH_NTase1_ass  Cytidyltransferase-related C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2     1e-05     0.061     123     199 ..     127     203 ..      94     208 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1e-05
  HIGH_NTase1_ass 123 letvneldldelldlnlldeklankliekrpyes..ieeikeaiprgfskhykerilsvLeakiekdviskyienyPak 199
                      ++t++++ l+       +  k an+++++++ +s  i+ i+++i++ ++++ ++ +l+ L +k+  +vi+k ien  + 
       CCD24617.1 127 VKTADDYVLRV-F-AIAFTRKQANQVKRTAYAQSshIRAIRKVISEILTREVQNCTLAQLTSKLIPEVINKEIENATKD 203
                      45555555554.2.23578899****88875543339*************************************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1880.14
//
Query:       CCD24618.1  [L=214]
Description: hypothetical protein NDAI_0D03040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-28   98.0   0.0      5e-28   97.7   0.0    1.1  1  Ras        Ras family
    4.4e-20   72.1   0.0    6.1e-20   71.6   0.0    1.2  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    0.00099   18.1   0.2      0.039   12.8   0.1    2.0  2  DLIC       Dynein light intermediate chain (DLIC)
     0.0015   17.9   0.1     0.0017   17.7   0.1    1.2  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
     0.0024   17.3   0.1      0.003   17.0   0.1    1.2  1  Arf        ADP-ribosylation factor family
  ------ inclusion threshold ------
       0.01   15.9   0.0      0.016   15.3   0.0    1.3  1  MMR_HSR1   50S ribosome-binding GTPase
       0.11   12.0   0.0       0.22   11.0   0.0    1.5  1  AAA_7      P-loop containing dynein motor region
       0.18   11.8   0.1       0.65   10.0   0.0    2.0  2  STAT2_C    Signal transducer and activator of transcription 2


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   2.2e-31     5e-28       4     160 ..      25     185 ..      22     187 .. 0.94

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 2.2e-31
                 EEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST CS
         Ras   4 lvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikrvae 102
                 lvGd +vGKtsl++++v++ F+eey++T+gv+ ++++++++++++  +++D  Gq ef ++ +    ++++i+ ++d+t+ e+++++k+w+++++   +
  CCD24618.1  25 LVGDAQVGKTSLMVKYVQNIFDEEYTQTLGVNYLKRKVRLHSTDIIYSLMDLGGQREFINMLPIAAVGSSAIIFLFDLTRPETLNSIKDWYRQVNGLND 123
                 8***********************************************************************************************999 PP

                 TTSEEEEEEETTTGGG......G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 103 envpivLvGnKvDlee......kravsteegeelakelglkfletSAktnenveeafeellrei 160
                      +LvG+K Dl        ++++s++ + e++k ++ + + +S  +  n++++f+ +l +i
  CCD24618.1 124 V-AIPILVGTKYDLFIgldsnyQNHISNS-AIEYSKIMNSPLVFCSTAEGINIQKIFKIALAKI 185
                 5.6668********888889989999876.566************************9998877 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   2.7e-23   6.1e-20       2     119 ..      23     135 ..      22     136 .. 0.90

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 2.7e-23
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHHH CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlke 97 
                 v lvGd++vGKtsl+ ++v++ f+e++++t+gv++l+++v ++++       +++ +++ D++Gq +f ++ p+   +++++i+++d    ++ +++k+
  CCD24618.1  23 VGLVGDAQVGKTSLMVKYVQNIFDEEYTQTLGVNYLKRKV-RLHS-------TDIIYSLMDLGGQREFINMLPIAAVGSSAIIFLFDltrPETLNSIKD 113
                 679*********************************9987.3332.......4699*******************************7434456899** PP

                 HHHHHHHHCSSS-EEEEEE-TT CS
         Roc  98 WlkelkkvagkspvilvgnkiD 119
                 W+++++  ++ ++ ilvg+k+D
  CCD24618.1 114 WYRQVNGLNDVAIPILVGTKYD 135
                 ********************99 PP

>> DLIC  Dynein light intermediate chain (DLIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   1.8e-05     0.039      28     128 ..      23     119 ..      13     150 .. 0.80
   2 !    4.0   0.0    0.0083        19     236     281 ..     159     204 ..     121     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
        DLIC  28 vlvlGedgsGkttliak.lqGv..eeekkGrGleylyldvkdedrddltrlnvwildGdlyhkgllkfaleaeslkdtlvilvvdlsrPwtileslqkw 123
                 v ++G+   Gkt+l+ k +q +  ee+ +  G++yl  +v+ +  d     +   l G     ++l  a     +  + +i+  dl+rP  +l+s++ w
  CCD24618.1  23 VGLVGDAQVGKTSLMVKyVQNIfdEEYTQTLGVNYLKRKVRLHSTDII--YSLMDLGGQREFINMLPIAA----VGSSAIIFLFDLTRPE-TLNSIKDW 114
                 6789***********996799866778888888888888888877755..56677889999999888774....567889*********6.58999999 PP

        DLIC 124 asvlr 128
                  + ++
  CCD24618.1 115 YRQVN 119
                 98775 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0083
        DLIC 236 yGaallytsvkedknldllykylvhkiyglpfrtPalvvekdavli 281
                 + + l++ s  e  n+  ++k    ki++l + +P +    d +li
  CCD24618.1 159 MNSPLVFCSTAEGINIQKIFKIALAKIFNLTLVIPEITTVGDPLLI 204
                 35679******************************98877777776 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   7.7e-07    0.0017       4     106 ..      25     122 ..      22     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.7e-07
   Gtr1_RagA   4 LmGksgsGKts.mrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletlkei 101
                 L+G  + GKts m + + + +  + t++lg+    +k +++ +  +  +l+D+gGq++f++       + + +  +++i++fD +  e  ++++++ + 
  CCD24618.1  25 LVGDAQVGKTSlMVKYVQNIFDEEYTQTLGVNYLKRKVRLH-STDIIYSLMDLGGQREFINML---PIAAVGS--SAIIFLFDLTRPETLNSIKDWYRQ 117
                 89*********445566555566668888887777777775.556788************985...5566655..59*******977777777776666 PP

   Gtr1_RagA 102 lealr 106
                 ++ l 
  CCD24618.1 118 VNGLN 122
                 65554 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.3e-06     0.003      16     132 ..      22     141 ..      14     185 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.3e-06
                 EEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEE....EEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCT CS
         Arf  16 rilllGLDnaGKtTilkklkleelvt.tvPTigfnvee....leiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalle 109
                 ++ l+G  + GKt ++ k+ ++ +++  + T+g n  +    l+  ++ +++ D+GGq++  ++         a+if+ D +  e l++ k+  +++  
  CCD24618.1  22 QVGLVGDAQVGKTSLMVKYVQNIFDEeYTQTLGVNYLKrkvrLHSTDIIYSLMDLGGQREFINMLPIAAVGSSAIIFLFDLTRPETLNSIKDWYRQVNG 120
                 5557777889***********99987578999999754121245589999********************************99999999887766543 PP

                 SGCCTTSEE.EEEEE-TTSTTSS- CS
         Arf 110 eeelkeval.lvlaNKqDlpeals 132
                    l++va+ ++++ K Dl   l+
  CCD24618.1 121 ---LNDVAIpILVGTKYDLFIGLD 141
                 ...333333144567777765554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.0     7e-06     0.016       1     100 [.      22     114 ..      22     133 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7e-06
                 EEEEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHH..HHHHHHHHHHCTSEEEEEEETT.TTCSHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseek..glgkaflaleeadlillvvdas.eeklkpld 94 
                 +v++vG   vGK++L+ + +++    + +++ g+    ++ r++  +  + l+D+ G       e   +l  a      +++i++++d++     + l 
  CCD24618.1  22 QVGLVGDAQVGKTSLMVKYVQNifDEEYTQTLGVNYLKRKVRLHSTDIIYSLMDLGG-QR----EFinMLPIAAV---GSSAIIFLFDLTrP---ETL- 108
                 599******************96556778888888888888888777889*******.32....22123333333...36889999997731...222. PP

                 HHHHHH CS
    MMR_HSR1  95 eeleel 100
                 ++++++
  CCD24618.1 109 NSIKDW 114
                 444444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.6e-05      0.22      35      94 ..      22      82 ..      15     109 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.6e-05
       AAA_7 35 pvllvGptGtGKtviikd.llkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvy 94
                +v lvG++ +GKt+++ + + + +d+e +++l +n  ++    +  dii s ++   ++ +
  CCD24618.1 22 QVGLVGDAQVGKTSLMVKyVQNIFDEEYTQTLGVNYLKRKVRLHSTDIIYSLMDLGGQREF 82
                6789**************4555566777778889888888888888888777775554444 PP

>> STAT2_C  Signal transducer and activator of transcription 2 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         2   4.5e+03      44      52 ..      42      50 ..      41      52 .. 0.84
   2 ?   10.0   0.0   0.00029      0.65      22      48 ..     184     210 ..     175     213 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2
     STAT2_C 44 qstmdeayi 52
                q++ de y 
  CCD24618.1 42 QNIFDEEYT 50
                89****996 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00029
     STAT2_C  22 eifrNsikieeimpngdPlLagqstmd 48 
                 +if  ++ i ei++ gdPlL  ++ ++
  CCD24618.1 184 KIFNLTLVIPEITTVGDPLLIYKNLGN 210
                 68888899************9988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1539.47
//
Query:       CCD24619.1  [L=897]
Description: hypothetical protein NDAI_0D03050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-41  138.9   0.0    1.5e-40  137.3   0.0    1.9  1  AAA_lid_10       AAA lid domain
    2.6e-19   69.9   0.0    5.8e-19   68.8   0.0    1.6  1  AAA              ATPase family associated with various cellul
    5.3e-11   42.4   0.1    1.3e-10   41.2   0.1    1.7  1  BAH              BAH domain
    4.7e-06   26.9   0.0    2.4e-05   24.6   0.0    2.2  2  AAA_22           AAA domain
    0.00046   20.6   0.0     0.0078   16.6   0.0    2.4  1  AAA_16           AAA ATPase domain
    0.00067   19.6   0.3    0.00067   19.6   0.3    2.5  2  ATPase_2         ATPase domain predominantly from Archaea
      0.008   16.5   0.0      0.024   15.0   0.0    1.9  1  AAA_19           AAA domain
  ------ inclusion threshold ------
      0.033   14.6   0.0       0.47   10.9   0.0    3.0  2  RNA_helicase     RNA helicase
      0.065   13.0   0.6       0.53   10.0   0.0    2.5  2  AAA_11           AAA domain
       0.13   12.0   0.1       0.63    9.7   0.0    2.1  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.15   11.9   0.0       0.31   10.9   0.0    1.5  1  NACHT            NACHT domain


Domain annotation for each model (and alignments):
>> AAA_lid_10  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.3   0.0   9.2e-44   1.5e-40       2      99 .]     643     738 ..     642     738 .. 0.96

  Alignments for each domain:
  == domain 1  score: 137.3 bits;  conditional E-value: 9.2e-44
                 HHH----------------------------------------------HHHHHHHHHHT-TTTTHHHHHHHHHHHHHHHTT-XXXXXXXXXXXXXXX CS
  AAA_lid_10   2 frlkglnksffyvnektgsailieaeeekkqklPenvkkvrlkisddaieiasrkvAsvsgdarrAlkiCkrAvEiaekdyvakhGlgydgkavvseE 99 
                 frlkgln s+fyv+++tgsai++e++ee ++ lP+++kk+rl++s daieiasrkvAsvsgdarrAlkiCkrA+Eiae++y+ khG+ +++++++s+E
  CCD24619.1 643 FRLKGLNGSYFYVDSQTGSAIQLESTEE-TDPLPAGMKKIRLQMSPDAIEIASRKVASVSGDARRALKICKRAAEIAETNYMVKHGY-SYDATINSDE 738
                 8************************999.99********************************************************.7788888887 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.0   3.6e-22   5.8e-19       2     131 ..     481     625 ..     480     626 .. 0.93

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 3.6e-22
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS................STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsellsk................yvgesekkirelfkeakekakp.silfiDEidalaks 73 
                 ++ G+pG+GKTl++k v+k+l          +++f+ei+g ++++                 ++ +s+++++ +f+++ +++k  +++++DE+dal+++
  CCD24619.1 481 YVAGTPGVGKTLTIKEVIKDLissanqhelpKFKFVEINGLKMVKAtdsyevlwnkisgerlTWAASMESLEFYFNKVPQNKKFaTVVLLDELDALVNK 579
                 789*****************88877777777799**********558******************************98888445************** PP

                 HTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEETT CS
         AAA  74 rsgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkieie 131
                 +           ++ +++++++ +  ++k+ivi+++n++d ++++l  ++++++i ++
  CCD24619.1 580 S-----------QDIMYNFFNWTTYTNAKLIVIAVANTMDLPERQLG-SKVSSRIGFT 625
                 *...........***********************************.9999999875 PP

>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.1   7.8e-14   1.3e-10       3     121 ..      50     185 ..      48     186 .. 0.86

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 7.8e-14
                 EETTGEEEEEETTSTTEEEEEEEEEEEEETTSTCEEEEEE..EEEE...................ECGGGS.TTTTHCCCT....TEEEEEEEEEEEEG CS
         BAH   3 yavGdfVyfddtstdepyqirrIeeLkenakneeaeatvl..vdwf...................lrpeet.ksalklrqk....rElfltrqseilpl 75 
                 ++ Gd+V++++++ +++  +++I+e++ n+ n+ +e++ +  ++wf                        t ++ ++  ++     El+lt +++++ l
  CCD24619.1  50 IGRGDSVVMNNKK-TDTWAVYMIHEIRLNTLNNLVEIWSFnyLRWFeldaiqffkafdkdqlkgtP----TiEDLNRIIAEnvnkSELYLTLELSEILL 143
                 578**********.9******************888888878*****************9955443....4444455544444337************* PP

                 GGEEEEEEEEEHHHHCTECCHCHHCSTTEEEEEEEEETTTTEEEE- CS
         BAH  76 aairgkcrVvllsdleeaqnylpkklddtFycslvydptaktfkkd 121
                  +++  +++++ +d+ +++n+++    ++F+++++  p++++f+ +
  CCD24619.1 144 VDFISMANIMSQEDWDKSENNPK----KDFVVRYISYPSTEKFREI 185
                 *******************9886....9**************9876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.5e-08   2.4e-05       4     128 ..     476     601 ..     472     611 .. 0.73
   2 ?   -2.5   0.0       3.4   5.5e+03      39      81 ..     770     811 ..     749     826 .. 0.61

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.5e-08
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav....iellii 97 
                 +a+ l+v G +G+GKT++++++ + l   a++ e ++ ++v+++  +  + +d ++ l +++  e+ +      + +e le ++++         ++++
  CCD24619.1 476 SATTLYVAGTPGVGKTLTIKEVIKDLISSANQHElPKFKFVEINGLKMVKATDSYEVLWNKISGERLT----WAASMESLEFYFNKVPQnkkfATVVLL 570
                 78899*******************9966655555788888888888888**************87666....44444444444444444444589**** PP

      AAA_22  98 DEaqhlr..seealeeLrsllnlsrkgvqliLv 128
                 DE + l   s++++ ++ ++     ++ +li++
  CCD24619.1 571 DELDALVnkSQDIMYNFFNWTT--YTNAKLIVI 601
                 *****87675666655545544..555555554 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.4
      AAA_22  39 rpevvfvtlpsstsskdllrellralglelkaerlsseellea 81 
                 ++++v +    + +sk +l +ll+ ++ ++ + ++++ ++++ 
  CCD24619.1 770 NSHTVDYISHLPFTSKLFLYALLNLTKKNGLY-EQNLGDVIDE 811
                 66666555556666777777777777766555.6665555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.8e-06    0.0078       2      51 ..     454     504 ..     453     601 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.8e-06
      AAA_16   2 lvGReeeleqL.lsalervrsgrpelvllsGesGvGKsslvrellralekd 51 
                 l+ Re+  + + ls+++++ s +   +++ G +GvGK+  ++e+ + l  +
  CCD24619.1 454 LPARENKFASIyLSIYSALESESATTLYVAGTPGVGKTLTIKEVIKDLISS 504
                 788999999999999999999999*******************99977666 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.7       2.2   3.6e+03      46     109 ..     371     431 ..     357     449 .. 0.46
   2 !   19.6   0.3   4.1e-07   0.00067      11     163 ..     468     603 ..     465     643 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.2
    ATPase_2  46 dkdkyviyyialrees....iskldefieeeeekkklekalgiavpkaeleeilkeksklvfkaiell 109
                  k+ky  +   +r+++    + k+++f e +++++ +   l +++++ +++++++         ++++
  CCD24619.1 371 AKKKYTPFSKRFRSIAaipdLRKVSSFKESSDKSDLAHHNLEDKLKTSNGHKVVE-------TIFSKV 431
                 4555666666666553111134455553333333333344444444444444433.......222222 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 4.1e-07
    ATPase_2  11 leeilerepneiyfiYGpegsGKtaLlkeiienl.edkdkyviyyialreesiskldefieeeeekkklekalgiavpkaeleeilkeksklvfkaiel 108
                 + + le+e+++ +++ G  g+GKt  +ke+i+ l ++ +++ +  +++ e++  k+ +        +   ++l +++   +l      + +   +++e 
  CCD24619.1 468 IYSALESESATTLYVAGTPGVGKTLTIKEVIKDLiSSANQHELPKFKFVEINGLKMVKA------TD-SYEVLWNKISGERL------TWAASMESLEF 553
                 67889*****************************5555666666666666655555554......22.23444555666666......45677899999 PP

    ATPase_2 109 llekikkkgkk.iiiiiDelqklidlglngaellvkeLlnliesltkekhlcvvic 163
                 +++k+ +++k   ++++Del  l+    n++++ +++++n   +   + +l+v+ +
  CCD24619.1 554 YFNKVPQNKKFaTVVLLDELDALV----NKSQDIMYNFFNWTTY--TNAKLIVIAV 603
                 99***99987789***********....999*********9999..5556666654 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.5e-05     0.024       8      39 ..     475     506 ..     469     601 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvelgg 39 
                  ++++l v + pG GKT ++k++++ l++  +
  CCD24619.1 475 ESATTLYVAGTPGVGKTLTIKEVIKDLISSAN 506
                 4678899******************9987654 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.9   3.2e+03      28      50 ..      50      72 ..      40      76 .. 0.79
   2 ?   10.9   0.0   0.00029      0.47       1      30 [.     480     509 ..     480     536 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.9
  RNA_helicase 28 lkkkdsvysrnpeddfwdgYtgq 50
                    + dsv+++n+++d w  Y  +
    CCD24619.1 50 IGRGDSVVMNNKKTDTWAVYMIH 72
                  566789999********999855 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00029
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkk 30 
                   +++ G +g+GK++++ke++k+l ++ ++++
    CCD24619.1 480 LYVAGTPGVGKTLTIKEVIKDLISSANQHE 509
                   5899******************98875554 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00033      0.53      10      44 ..     468     504 ..     462     533 .. 0.79
   2 ?   -0.4   0.3      0.48   7.8e+02     102     185 ..     695     773 ..     662     785 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00033
      AAA_11  10 iksalsese..itliqGPPGtgKTktivellsqllsr 44 
                 i+sal++++     + G PG gKT ti e+++ l+s+
  CCD24619.1 468 IYSALESESatTLYVAGTPGVGKTLTIKEVIKDLISS 504
                 7788888886556799*****************9854 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.48
      AAA_11 102 eavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeae 185
                 ++v svs + +   ++ k      a ei++++  +++  + ++  +++e+ k+ k+++ +++e++  +++   + l+++l++++
  CCD24619.1 695 RKVASVSGDARRALKICK-----RAAEIAETNYMVKHGYSYDATINSDETAKEGKSEDTDQEEVQTIHIRHIMQALNESLNSHT 773
                 444444433333333322.....2222333333333333333333334777888888888888888888888888888887766 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00038      0.63       2      43 ..     481     520 ..     480     542 .. 0.71
   2 ?   -1.4   0.1      0.95   1.5e+03     146     183 ..     731     772 ..     703     783 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00038
  Viral_helicase1   2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegk.pklp 43 
                      +v+G pG GK+  i++++++   +++ ++  el +  + + ++
       CCD24619.1 481 YVAGTPGVGKTLTIKEVIKD--LISSANQ-HELPKFKFvEING 520
                      699****************9..4444333.6776666554444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.95
  Viral_helicase1 146 veversgel..kvetepkgqe..kvlvyltftqalkealgvr 183
                      + + +s+e   ++++e  +qe  +++++ +  qal e+l+++
       CCD24619.1 731 DATINSDETakEGKSEDTDQEevQTIHIRHIMQALNESLNSH 772
                      444455555332222222221358999999999998888887 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00019      0.31       2     137 ..     479     612 ..     478     636 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC..-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-C...CHHHHCC.SCCCEEEEEE-STT-S CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqga..fklvFflslrelsrsgnarsladllfsqlpepaapvse...vwavlle.lperlLlilDglDelv 94 
                 ++ + G +G+GKT  +++++ ++ ++  +++   fk+v    l++++       l + +  + +  aa  +    +++ + +  +  ++ +lD lD lv
  CCD24619.1 479 TLYVAGTPGVGKTLTIKEVIKDLISSANQHELpkFKFVEINGLKMVKATDSYEVLWNKISGERLTWAASMESlefYFNKVPQnKKFATVVLLDELDALV 577
                 67899*************999999888777655566666666666666666689999999999888888877777555554404457789999999999 PP

                 S-TCH.........HHHHHCTTTTT--EEEEEEECCCHHHHCT CS
       NACHT  95 tdlgqkekqpvrtlLselirkkllpeasllltvrpralrdlee 137
                 ++ +          + + ++ +  ++a+l++++  ++    e+
  CCD24619.1 578 NKSQD--------IMYNFFNWTTYTNAKLIVIAVANTMDLPER 612
                 86666........889999999999999888887777644444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       876  (0.0488594); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.40
# Mc/sec: 6780.42
//
Query:       CCD24620.1  [L=1303]
Description: hypothetical protein NDAI_0D03060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-32  111.9   0.9    6.4e-32  111.1   0.9    1.3  1  RVT_2            Reverse transcriptase (RNA-dependent DNA pol
    8.9e-14   51.7   0.0      2e-13   50.5   0.0    1.7  1  rve              Integrase core domain
    3.1e-05   23.8   0.1    9.8e-05   22.1   0.1    1.9  1  gag_pre-integrs  GAG-pre-integrase domain
    5.8e-05   22.7   2.4    5.8e-05   22.7   2.4    2.2  2  zf-C2H2_10       C2H2 zinc-finger


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.9   1.4e-35   6.4e-32      11     208 ..     905    1103 ..     900    1136 .. 0.83

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 1.4e-35
       RVT_2   11 drkaigsrWvftkkkddlkevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkqPpGfeidr 107 
                  ++k i s ++ft+k+    ++ +k+rlva+G +qk g    ++ a  ++  ++   l+ +  + + + qld++sa+L a++de++y++ Pp +++  
  CCD24620.1  905 KNKIINSMFIFTIKR----DGTHKCRLVARGDQQKDGTYNTDMTANTVHHYALMTCLSNCLSNSYDIIQLDISSAYLYADIDETLYIRAPPHMNMK- 996 
                  678999********5....9****************99877887776665554444444455678899***********************99988. PP

       RVT_2  108 eeekvykLnkslyGlkqapllWnekidkvLk.klgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfklkdlgk..... 198 
                    +kv++L+kslyGlkq++  W++ i+ +L+ kl++++  +   ++++ + ++ li+ l+vdd+++ +++ k+  d  + l+++f  k + +     
  CCD24620.1  997 --NKVFQLQKSLYGLKQSGANWYKLIKGFLTdKLNMTEVLGWPCVFMKRKDKQVLIICLFVDDMILFTNSNKMATDAIELLKTRFATKVINDgkdnt 1091
                  ..9***************************8358999999999******99999*******************************999876422222 PP

       RVT_2  199 vskf..LGieia 208 
                  ++k+  LG+ei 
  CCD24620.1 1092 INKYdiLGMEIE 1103
                  455444666665 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   4.6e-17     2e-13       3     118 ..     410     527 ..     408     528 .. 0.91

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 4.6e-17
         rve   3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsde..mdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftr 98 
                 +p +++++Dv+  v++ +    +++ +++d ++r+ ++++l ++  +   +v+ +l + ++r+++++++ ++ D+g+ey +k ++++l+++gi+  f+ 
  CCD24620.1 410 EPFQYIHTDVFgPVSVDKPY-PSWFVAFTDEATRFRWVFPLENKtaDLMLHVITALVNTIKRQFNSKVLCFQFDHGREYDNKLLQNYLESNGIQSIFNS 507
                 799********999977777.***********************44444567788889999999999******************************** PP

         rve  99 pgrpqdnGkvErfhrtlkde 118
                 ++++ +nG++Er++ tl ++
  CCD24620.1 508 VADSASNGVAERMNLTLLND 527
                 **************999876 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   2.2e-08   9.8e-05      23      67 .]     341     392 ..     327     392 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.2e-08
  gag_pre-integrs  23 sinlWHrRLGHpsfsrlkkLfkkgllpglkisk.......sevCeaCqlgKq 67 
                      ++++ Hr LGH+++++l++ +k++ ++ ++i++        ++C +C +gK+
       CCD24620.1 341 PLDVVHRLLGHVNVKSLQQSIKNKTFDHFTIEDidwtgisTFQCITCLQGKS 392
                      56889**************************88666666677*********6 PP

>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   2.4   1.3e-08   5.8e-05       5      21 ..     129     145 ..     126     145 .. 0.93
   2 ?   -1.4   0.8      0.44     2e+03       1       7 [.    1266    1272 ..    1266    1272 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.3e-08
  zf-C2H2_10   5 tCSYChetGHtRAkCek 21 
                 +CSYCh +GHtR +C+k
  CCD24620.1 129 KCSYCHIVGHTRDQCFK 145
                 8**************86 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.44
  zf-C2H2_10    1 KnkitCS 7   
                  K+ itCS
  CCD24620.1 1266 KSTITCS 1272
                  899***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1244  (0.0693848); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.42
# Mc/sec: 9383.47
//
Query:       CCD24621.1  [L=381]
Description: hypothetical protein NDAI_0D03070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.085   13.2   0.0        0.3   11.4   0.0    1.9  2  Methyltransf_FA  Farnesoic acid 0-methyl transferase
       0.19   11.3  11.8       0.97    9.0  11.8    2.1  1  SUR7             SUR7/PalI family


Domain annotation for each model (and alignments):
>> Methyltransf_FA  Farnesoic acid 0-methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.3e-05       0.3      53      96 ..      69     111 ..      59     116 .. 0.79
   2 ?   -3.6   0.0       1.6   1.5e+04      13      26 ..     184     197 ..     177     199 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.3e-05
  Methyltransf_FA  53 efrkfwiswtkdGlievgkggeeepflewsdskplsvnyigfst 96 
                       + ++ + w+ + li     ++e+ + +++ds+ ++vny+gf++
       CCD24621.1  69 SYLTLDMGWS-NELIDPEIYKDENLIDTFQDSNVYKVNYLGFCK 111
                      5666777785.88887777778899******************8 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.6
  Methyltransf_FA  13 sdemyeIviGgwgN 26 
                      ++   +I +G ++N
       CCD24621.1 184 DKGFSKILLGDQKN 197
                      55578899999998 PP

>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  11.8   0.00011      0.97      48     176 ..      76     285 ..       6     307 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00011
        SUR7  48 i....................gladvysfgvwgyC.....................................dnsdvnytkCskpkagypfdpleelns 89 
                                      +  +vy++ + g+C                                     +                          
  CCD24621.1  76 GwsnelidpeiykdenlidtfQDSNVYKVNYLGFCkkndiedkkiycvsnglagmdilgilirdiglqlgelS-------------------------- 148
                 0444555555555555666556667888888888866444444444444444444444444444444444442.......................... PP

        SUR7  90 esngkvd..................................................lPsnlrktlsklnnlt...kalfilhiialvlsfi..slvvg 133
                                                                           P+n+r  ++  ++l+   k+l i++++ + +sfi  ++vv+
  CCD24621.1 149 ------SahvndtrqlgdsmvftyhltlnslrklfkndkkkdkgfskillgdqknadGPKNYRRGIDIAYTLMlfnKVLTITYLTEFSISFIcvAIVVA 241
                 ......2444444444444444444444444444455555556788889999999999*******9997776544488999999999888886577888 PP

        SUR7 134 llaicvspdnsrllsflnlllsvlsflatllaall.dtllfvfv 176
                 +  ++ + ++ r++ ++  ++  l +l++++++++ ++ l ++ 
  CCD24621.1 242 FGMVLLWGKHHRFIPLFLKIFGSLLMLLSTITFCCnIIYLLILK 285
                 88888899999976655556655555555555555155555533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2870.87
//
Query:       CCD24622.1  [L=353]
Description: hypothetical protein NDAI_0D03080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-30  104.2   0.1    1.3e-29  103.6   0.1    1.1  1  COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
    1.8e-23   82.7   0.0      4e-23   81.6   0.0    1.6  1  ERGIC_N          Endoplasmic Reticulum-Golgi Intermediate Com


Domain annotation for each model (and alignments):
>> COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   0.1   1.5e-33   1.3e-29      50     219 ..     159     321 ..     146     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 103.6 bits;  conditional E-value: 1.5e-33
  COPIIcoated_ERV  50 kkegCrikGklevnkvaGnfhiap.gksfqeekrhvhdlssyekeklnfsHtihkLsfgeelpgekknPLdgtk.keeeekalmfqYflkvvpt 141
                        +gC+i G+++vn+vaG+++++  g+ + + +r      ++  ek+nf H+i+++sfge +p    nPLd++   + ++  + + Y  +v+p+
       CCD24622.1 159 DFNGCHIFGSVNVNQVAGELQVTAkGHGYADYHR-----APL--EKVNFAHVINEFSFGEFFPYI-DNPLDNSAkFNMDDPLTAYVYDTSVIPM 244
                      339*****************98641555555332.....233..48*****************99.6******975678999************ PP

  COPIIcoated_ERV 142 kyekldkkkietnqysvtehersleggkdesekglPGvffsYeisPlkvivkeerksflhfltslcaiiGGvltvasl 219
                       y+k++  +++t+qysv eh+ + ++++++++  +PG+ff+Y++  l+++v+ +r  f++f+++l+ai++ ++ +as+
       CCD24622.1 245 IYRKMGA-EVDTFQYSVAEHQYKSKESSSSNSFRVPGIFFQYNFENLSIVVSDRRLGFIQFIVRLVAILSFAVYIASW 321
                      ****987.6*****************99999999***********************************988888876 PP

>> ERGIC_N  Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   4.5e-27     4e-23       1      89 [.       5      92 ..       5      94 .. 0.97

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 4.5e-27
                XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX-EEEEEE--S--SEEEEEEEEEE.SS-GGGEEEEEEETTECE CS
     ERGIC_N  1 lrrfDafpKvpedltqktlsGgiislvcillilfLllselteylttevkeelvvdksrsekleinlditfpalpCellsldvqDesgeh 89
                l+ fDafpK++++ ++k+++Ggi s+++++li+f+ +se+ +y+ + v+++++vd   +e++ inld+ + ++pCe+++++v+D++ ++
  CCD24622.1  5 LKVFDAFPKIEDQNKKKSTKGGITSILTYVLIIFIAWSEFGSYFGGFVDQQYIVDGMLRETVPINLDLYV-NVPCEWVHVNVRDQTLDR 92
                688***********99******************************************************.*************99776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2748.57
//
Query:       CCD24623.1  [L=454]
Description: hypothetical protein NDAI_0D03090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-15   56.6  26.3    3.5e-09   36.7  13.7    4.0  3  IBR            IBR domain, a half RING-finger domain
     0.0044   17.3   8.6     0.0044   17.3   8.6    4.6  5  zf-RING_2      Ring finger domain
  ------ inclusion threshold ------
        2.7    8.0  26.8        4.3    7.4   0.0    5.7  5  zinc_ribbon_4  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   9.7         3   1.8e+04      31      56 ..     179     204 ..     157     226 .. 0.54
   2 !   36.7  13.7   5.9e-13   3.5e-09       1      62 []     262     328 ..     262     328 .. 0.81
   3 !   33.7   4.7   5.1e-12     3e-08      12      54 ..     383     423 ..     370     428 .. 0.86

  Alignments for each domain:
  == domain 1  score: -5.3 bits;  conditional E-value: 3
         IBR  31 eksegcksvtCskCgfef.CfnCkkew 56 
                   ++g k+++ + Cg+ f C+ C k +
  CCD24623.1 179 DVKKGDKMIQLP-CGEHFlCLYCTKTY 204
                 445555554555.55555555555443 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 5.9e-13
         IBR   1 ekyeklklkksles.dpn....lkwCprpdCeaiieksegcks.vtCskCgfefCfnCkkewHegl.sC 62 
                 e+yekl +++  ++ ++     +++Cp   C++++ k++  ++ ++CskC+f fCf+C+++wH+   +C
  CCD24623.1 262 ERYEKLFYEQAATKiSKHsplaCTNCP--SCKRPCIKDDLDDYmIQCSKCKFTFCFDCLHSWHGYNnRC 328
                 5788888888766644446689*****..9**********555377*****************966576 PP

  == domain 3  score: 33.7 bits;  conditional E-value: 5.1e-12
         IBR  12 lesdpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCkk 54 
                  e+ +nl+ Cp  +C ++i+ segc++++C+ Cg+ fC+ C +
  CCD24623.1 383 AEKGSNLQRCP--KCRTVIQRSEGCNKMKCTICGTTFCYICTQ 423
                 566899*****..****************************75 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   8.6   7.3e-07    0.0044       2      43 ..     173     222 ..     172     223 .. 0.80
   2 ?   -1.8   3.7      0.69   4.1e+03      36      44 .]     279     291 ..     257     296 .. 0.71
   3 !    5.8  14.3     0.003        18       2      40 ..     286     328 ..     285     329 .. 0.70
   4 ?    1.0   0.5     0.092   5.5e+02      38      44 .]     390     396 ..     383     396 .. 0.74
   5 ?   -2.4  10.9         1   6.2e+03       2      34 ..     391     425 ..     390     441 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.3e-07
   zf-RING_2   2 eCpICleelssadsvlllpCg.HvfhreClerwlrssst........CPlC 43 
                 +C+IC  +++++d++++lpCg H+ +  C +++ ++ ++        CP C
  CCD24623.1 173 DCCICV-DVKKGDKMIQLPCGeHFLCLYCTKTYYTQMIEegnivnvrCPEC 222
                 6****6.999***********5668****977654444456669999**99 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.69
   zf-RING_2  36 ssst....CPlCr 44 
                 +s+     CP C+
  CCD24623.1 279 HSPLactnCPSCK 291
                 3433666799996 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.003
   zf-RING_2   2 eCpICleel...ssads...vlll.pCgHvfhreClerwlrssstC 40 
                 +Cp C  ++   +       ++++ +C+ +f+++Cl  w   +++C
  CCD24623.1 286 NCPSCKRPCikdD---LddyMIQCsKCKFTFCFDCLHSWHGYNNRC 328
                 5888876663322...22334444489888***************9 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.092
   zf-RING_2  38 stCPlCr 44 
                 ++CP Cr
  CCD24623.1 390 QRCPKCR 396
                 45****9 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 1
   zf-RING_2   2 eCpICleelssadsvlllp...CgHvfhreClerwl 34 
                  Cp C   +++++ + +++   Cg +f++ C +++l
  CCD24623.1 391 RCPKCRTVIQRSEGCNKMKctiCGTTFCYIC-TQIL 425
                 69999988888888775543359999*****.4545 PP

>> zinc_ribbon_4  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0027        16      21      31 ..     212     222 ..     206     224 .. 0.82
   2 ?   -0.7   1.7      0.23   1.4e+03       4       9 ..     286     291 ..     278     292 .. 0.79
   3 ?    5.1   1.8    0.0037        22      25      35 ..     303     313 ..     300     321 .. 0.78
   4 ?    7.4   0.0   0.00071       4.3      19      35 ..     382     399 ..     377     400 .. 0.70
   5 ?    2.6   3.0     0.021   1.3e+02      25      35 ..     407     417 ..     402     418 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0027
  zinc_ribbon_4  21 akgvkvrCskC 31 
                    +++v+vrC+ C
     CCD24623.1 212 GNIVNVRCPEC 222
                    67889999999 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.23
  zinc_ribbon_4   4 tCpsCk 9  
                     CpsCk
     CCD24623.1 286 NCPSCK 291
                    588886 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0037
  zinc_ribbon_4  25 kvrCskCghvF 35 
                    +++CskC+ +F
     CCD24623.1 303 MIQCSKCKFTF 313
                    56777777666 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.00071
  zinc_ribbon_4  19 lpakgvkv.rCskCghvF 35 
                    +++kg+++ rC+kC++v+
     CCD24623.1 382 IAEKGSNLqRCPKCRTVI 399
                    5556664428****9997 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.021
  zinc_ribbon_4  25 kvrCskCghvF 35 
                    k++C+ Cg++F
     CCD24623.1 407 KMKCTICGTTF 417
                    89********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       934  (0.0520944); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3412.26
//
Query:       CCD24624.1  [L=543]
Description: hypothetical protein NDAI_0D03100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-30  103.0   3.7    3.8e-28   97.2   0.1    3.7  4  SSrecog   Structure-specific recognition protein (SSRP1)
    1.7e-29  102.1   0.3    1.1e-26   93.1   0.1    2.7  2  POB3_N    POB3-like N-terminal PH domain
    2.8e-28   98.2   0.1    1.2e-25   89.7   0.0    3.2  3  Rtt106    Histone chaperone Rttp106-like


Domain annotation for each model (and alignments):
>> SSrecog  Structure-specific recognition protein (SSRP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.1   6.3e-32   3.8e-28       1      69 []     110     179 ..     110     179 .. 0.99
   2 ?    1.6   0.0     0.045   2.7e+02      37      59 ..     315     337 ..     308     366 .. 0.69
   3 ?    3.1   0.0     0.015        90      20      38 ..     398     416 ..     391     454 .. 0.79
   4 ?   -3.7   0.1         2   1.2e+04      37      55 ..     508     524 ..     502     527 .. 0.64

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 6.3e-32
     SSrecog   1 GwNwGkaefegselvfqvdnkpafeiplsevsncnlagknEvaleFh.qdddaaenedqLvEmRfyvPgt 69 
                 GwNwGk++++++el f  ++kp fe+p+s+++n+nl++knEv +eF+ q++++++++d+LvEmRfy+Pgt
  CCD24624.1 110 GWNWGKTDLARNELIFALNGKPTFEVPYSHINNTNLTSKNEVGIEFNiQNEEYQPAGDELVEMRFYIPGT 179
                 9*******************************************************************96 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.045
     SSrecog  37 agknEvaleFhqdddaaenedqL 59 
                  + +Ev l++ +dd  a+ +d+L
  CCD24624.1 315 DEETEVQLNLEDDDYEANYKDKL 337
                 55689999997555555555554 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.015
     SSrecog  20 nkpafeiplsevsncnlag 38 
                  kp   ip s+vs +n++ 
  CCD24624.1 398 TKPTLYIPFSDVSSVNISR 416
                 689999**********964 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 2
     SSrecog  37 agknEvaleFhqdddaaen 55 
                 +g ++va eF  d+da ++
  CCD24624.1 508 SGEEDVAEEF--DSDAPVS 524
                 5677888899..4444444 PP

>> POB3_N  POB3-like N-terminal PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.1   1.8e-30   1.1e-26       2      93 .]       4     103 ..       3     103 .. 0.96
   2 !    6.5   0.0    0.0019        11      37      86 ..     404     460 ..     397     468 .. 0.75

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 1.8e-30
      POB3_N   2 efeniylelsgdsGklrlsesglgwknsktgkv........vqikasdissaqWvrvargyqLrillkdgkvvrfdGFkeedfdkLskllkknfniele 92 
                 +f++iyl++s+ +G++r+++sglgwk+s +g +        + ++a+++s++qW+r++rgy+L+i++k+++vv++dGF+++df+ +++ ++++f+i++e
  CCD24624.1   4 DFDRIYLNQSKFNGRFRIADSGLGWKASASGGSasnkakapFLLPATELSTIQWSRACRGYELKINTKNQGVVQLDGFSQDDFNLIKSEFHHRFSIQIE 102
                 7*****************************97778899999********************************************************98 PP

      POB3_N  93 k 93 
                 +
  CCD24624.1 103 H 103
                 6 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0019
      POB3_N  37 ikasdissaqWvrva......rgyqLrillk.dgkvvrfdGFkeedfdkLskllkkn 86 
                 i+ sd+ss++ +r++      r++ L++ l+ +++ ++f+  ++e+++ L+++lk++
  CCD24624.1 404 IPFSDVSSVNISRAGqsstssRTFDLEVVLRlNRGSTTFGNISKEEQQLLEQFLKSK 460
                 555666666655543221225899******99**********************975 PP

>> Rtt106  Histone chaperone Rttp106-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.04   2.4e+02      27      87 ..      42     101 ..      39     103 .. 0.80
   2 ?    2.3   0.0     0.038   2.3e+02      20      49 ..     123     150 ..     118     174 .. 0.74
   3 !   89.7   0.0   2.1e-29   1.2e-25       2      89 .]     375     466 ..     374     466 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.04
      Rtt106  27 kPllfiplediesvsfeRvsvtsrtfdlvvelkk.eeveFsmidqeelegid.efvkskgiki 87 
                 k ++++p ++ + ++ +    + r  +l++++k+   v+++  +q++++ i+ ef ++  i+i
  CCD24624.1  42 KAPFLLPATELSTIQWS---RACRGYELKINTKNqGVVQLDGFSQDDFNLIKsEFHHRFSIQI 101
                 55677777777777777...5678899*****887788*************988888888877 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.038
      Rtt106  20 gllfgfkkPllfiplediesvsfeRvsvts 49 
                  ++ +  kP++ +p+++i+  +++  s ++
  CCD24624.1 123 LIFALNGKPTFEVPYSHINNTNLT--SKNE 150
                 4566678***************99..4333 PP

  == domain 3  score: 89.7 bits;  conditional E-value: 2.1e-29
      Rtt106   2 gVkasrkakeGlLyflekgllfgfkkPllfiplediesvsfeRv...svtsrtfdlvvelkk..eeveFsmidqeelegidefvkskgikiks 89 
                 +V++s+ka+eG+Ly+l+++++f + kP+l+ip++d++sv+++R+   s++srtfdl+v+l+    +++F++i++ee++ +++f+ksk++++k+
  CCD24624.1 375 AVSCSYKANEGYLYPLDNAFFF-LTKPTLYIPFSDVSSVNISRAgqsSTSSRTFDLEVVLRLnrGSTTFGNISKEEQQLLEQFLKSKNLRVKN 466
                 69********************.************************************944559*************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 4006.81
//
Query:       CCD24625.1  [L=582]
Description: hypothetical protein NDAI_0D03110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.4e-109  364.5   1.4   4.8e-109  364.0   1.4    1.2  1  Dak1      Dak1 domain
    3.7e-45  154.0   2.0    6.5e-45  153.1   2.0    1.4  1  Dak2      DAK2 domain


Domain annotation for each model (and alignments):
>> Dak1  Dak1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.0   1.4  5.4e-113  4.8e-109       1     302 [.      15     328 ..      15     338 .. 0.93

  Alignments for each domain:
  == domain 1  score: 364.0 bits;  conditional E-value: 5.4e-113
                 HHHHHH-TTEEEETTTTEEEETT-S-TTS-EEEEEEEESSTTTTGGGBSBTSBSEEEEEEETS---HHHHHHHHHHH--S.S-EEEEEESSHHHHHHHH CS
        Dak1   1 eGlvaanpelklleeekvvvrkkekkkgkValisgGGSGHePahagfVGkgmldaavaGevFaSPsakqilaaikavdsg.kGvllivkNYtGDvlnfg 98 
                 +G+v anp+++l++eek+++r+  ++k+k+alisgGGSGHeP+hagf+G+gml++av+G+vFaSPs+kqil+ i+ ++++ kGvllivkNYtGDvl+fg
  CCD24625.1  15 KGFVLANPSITLVPEEKFLYRT--TDKNKIALISGGGSGHEPTHAGFIGEGMLSGAVCGDVFASPSTKQILNGIQLIAENsKGVLLIVKNYTGDVLHFG 111
                 69*******************4..568*************************************************95544****************** PP

                 HHHHHHHHTT--EEEEEE--B-SSS.SSTTCSSSB--THHHHHHHHHHHHH...HHT--HHHHHHHHHHHHTTEEEEEEEEE--B-TTTSSBSS---TT CS
        Dak1  99 lAaekakaegikvetvvvdDDvave.dseekagrRGvagtvlveKiaGaaA...eegasLeevaelaekvaenlrsigvalsactvpgagkpsfelaed 193
                 l+ae+a+a gi++++vvv++Dvav+ +++ ++grR++agtvlv+Ki+Ga+A   +e++ L+  +++a  v++++++ig +l++c+vpg++ +s+ l+e+
  CCD24625.1 112 LSAERARALGIDCRVVVVGEDVAVGrEKGGMVGRRALAGTVLVHKIVGAFAekySEKYGLDGTESVAYIVNDAMVTIGSSLDHCKVPGRKFESE-LNEK 209
                 ************************999************************44445899*******************************8875.**** PP

                 EEEETE-TTS---SEEEE---HHH..HHHHHHHHHHH............TT-EEEEEEEE-BSS-HHHHHHHHHHHHHHHHHT.T-EEEEEEEESSS-- CS
        Dak1 194 eielGlGiHgEpGvervklksade..lveelleklle..dke.....lkkgdevvllvNglGgtsllelyivarevaelleek.gikvvrvlvGeyvTs 282
                 ++elG+GiH+EpGv+  ++ +++e  + +++l kll+  dk+     +kk+devvll+N+lGg+s+l ++ +a+ +++ l+e+ +ik+v+++vG+++Ts
  CCD24625.1 210 QMELGMGIHNEPGVKVLEPIPSTEdlISNHMLPKLLDstDKDrafvdFKKDDEVVLLINNLGGVSNLIISSIASITTDFLAEQyNIKPVKTIVGTVMTS 308
                 ********************9988988899******85544488888888********************************99*************** PP

                 TTBEEEEEEEEEE-HHHHHH CS
        Dak1 283 ldmaGfsitllklddellel 302
                 ++++Gfsitll++++  +el
  CCD24625.1 309 FNGNGFSITLLNASKVNKEL 328
                 ************98655554 PP

>> Dak2  DAK2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.1   2.0   7.2e-49   6.5e-45       1     173 [.     410     579 ..     410     580 .. 0.95

  Alignments for each domain:
  == domain 1  score: 153.1 bits;  conditional E-value: 7.2e-49
                 TTS-S-HHHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHHH--STHHHHHHHHHHHHHHHC............TT---HHHHHHHHHHHHHHHH-- CS
        Dak2   1 pvGDGDtGtnmargaeavlkaleeleeaslaevlkalakallsgagGtsGvlysqflralakal....kekee...ldaedlaaalkaaleaiqavgka 92 
                 +vGDGD+G ++ +g++ ++++l++l+++sl+ + ++++++++ ++gGtsG lys++++++++ l    k+  +   ++ae+ a+a++ ale++ +++ka
  CCD24625.1 410 QVGDGDCGYTLVAGVNGITENLDKLSKTSLSVATAQISDIIEGSMGGTSGGLYSILISGFSHGLiqvlKN--KgdpVTAEATAEAFEIALETLFKYTKA 506
                 59***********************************************************999655544..24459********************** PP

                 -TTSSSTHHHHHHHHHHHHT...........T---HHHHHHHHHHCCS---SSGGGGGGGGGTTS--HHHHHHHHHHHHHH CS
        Dak2  93 rpgdkTmlDvlrpavealekakdgedlkealekaakaaekgaeaTkellaklgrAsylgerslgvvDpGAvglalileala 173
                 r+g  T++D+l+p++e+++k+kd       ++ka++aa +ga++T   +ak+grAsy+g++s  v DpGAvg+  +l+++ 
  CCD24625.1 507 RKGSSTLVDALAPFIEEFAKSKD-------FKKAVQAAAEGAKSTGTFEAKFGRASYVGDSSN-VADPGAVGFTEFLKGIE 579
                 ***********************.......******************************998.**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.37
# Mc/sec: 4720.15
//
Query:       CCD24626.1  [L=458]
Description: hypothetical protein NDAI_0D03120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-46  158.9   8.1    2.2e-46  158.1   8.1    1.3  1  Dor1             Dor1-like family
  ------ inclusion threshold ------
      0.016   15.8   1.1      0.016   15.8   1.1    3.2  4  ING              Inhibitor of growth proteins N-terminal hist
      0.018   13.5   0.2      0.029   12.8   0.2    1.2  1  Lipoxygenase     Lipoxygenase
       0.02   14.8   2.0       0.14   12.0   0.7    3.0  2  Clathrin         Region in Clathrin and VPS
      0.026   14.5   0.0       0.18   11.9   0.0    2.4  1  TPR_7            Tetratricopeptide repeat
      0.051   13.8   1.4       0.18   12.1   0.1    2.4  2  ABC_tran_CTD     ABC transporter C-terminal domain
      0.055   13.8   0.1       0.23   11.8   0.1    2.0  1  Lzipper-MIP1     Leucine-zipper of ternary complex factor MIP
      0.063   13.4   0.3       0.17   12.0   0.3    1.8  1  TypeIII_RM_meth  Type III restriction/modification enzyme met
        1.9    9.0   9.5        7.6    7.0   4.3    2.8  3  FlgN             FlgN protein
        4.6    7.6   8.4         18    5.7   0.0    2.3  2  ESM4             Enhancer of split M4 family


Domain annotation for each model (and alignments):
>> Dor1  Dor1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.1   8.1   1.2e-49   2.2e-46       2     321 ..      32     351 ..      31     364 .. 0.92

  Alignments for each domain:
  == domain 1  score: 158.1 bits;  conditional E-value: 1.2e-49
        Dor1   2 selsskpleelek...epelLaeeaeeilaqiqdLarknyktlidaaealeairqelediraqledLvlklpkLteectrfskkaeeisekrkenklll 97 
                  ++ +k ++ +++     + ++ee++ei+a+i++L rk +  l+ + +a+ +    +ed  +ql ++++ l++L+e         ++i+++ k+ +++ 
  CCD24626.1  32 LQSDNKSYDTYFSsraSSGTITEEIAEIDAEISNLERKMRDLLVSNKNAIVNEVLRNED-TKQLGSIRSDLEQLWEL--------DNIVTNTKKLNST- 120
                 5788999***9997777889***************************************.9**************86........4566664444443. PP

        Dor1  98 dkheqllellelPqlmdrcirngyydealeLeayvsrLkqristnpviqsiaaeveetvqelleqLiqkLrsplqLaeclrvigYlrrvavlteae.Lr 195
                  ++e+ +++l + +l+ ++ ++ + d+ +e++ ++++L++r+s+   ++ +  ++ ++v  +l ++++ ++ p  +++c+r+++Y+++v+ +t+++ Lr
  CCD24626.1 121 GVQETTSDDLSIEELLGQSQSK-KEDKDDEFHTALKKLRNRMSKAQEKNTVTGNL-ASVLDNLTNITDLMELPYLARTCIRTGHYQEAVMLYTHTNsLR 217
                 688999***********99765.67999****************99998887765.6899999********************************99** PP

        Dor1 196 lkflqs..rdavLekileeldtknasellkrlieivrvnlfdvllqYraifp.degst.....lrdlaseekaagdaifswvlskissflqtlermlkr 286
                 +k ++s   ++ ++++l+e++t+++ +l+k l++   vn+ +++l+Y+a +p +++++     +++l  ++k+++++i  + +    s+ +++e+m+kr
  CCD24626.1 218 VKYPDStiIEEICQNVLKEINTTMLTGLVKLLSTSSTVNSMKKILKYLAAIPpFDVKEssaflNVFLPVRYKFIQGEISAYSIGTDVSNDSLMEMMVKR 316
                 ******889************************************************9999*99*********************************** PP

        Dor1 287 gievslekvldqlmyfaksfgrvgaDfrallppll 321
                 +iev++e+++ +l++f ksf+  +     +l p+l
  CCD24626.1 317 KIEVLREHIYVSLNVFCKSFSFATEEINFPLIPQL 351
                 *********************99998876666665 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.3     0.024        42      20      72 ..      53     107 ..      48     109 .. 0.73
   2 ?   15.8   1.1     9e-06     0.016      16      92 ..      97     183 ..      95     188 .. 0.85
   3 ?   -3.2   0.0       7.5   1.3e+04      29      41 ..     229     241 ..     226     265 .. 0.59
   4 ?   -4.0   0.0        10   1.8e+04      17      31 ..     384     398 ..     381     399 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.024
                 HHHHHHHHHHHHHHHHHH...HHHHHHHHTS..S-HHHHHHHHHHHHHHHHHHHHH CS
         ING  20 ltelreiDakvqellkei...dskiekflkngslqknekeeelsriqeelkeaqel 72 
                  +e+ eiDa++++l +++     + ++ +  ++   ne+ ++l +i+++l+++ el
  CCD24626.1  53 TEEIAEIDAEISNLERKMrdlLVSNKNAI-VNEVLRNEDTKQLGSIRSDLEQLWEL 107
                 58999*****9999888843322333333.45777888888888999999887665 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 9e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..........TS..S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING  16 lqrnltelreiDakvqellkeidskiekfl..........kngslqknekeeelsriqeelkeaqelldeKiqlaqqaldlvdkhlr 92 
                 ++  l++l e+D+ v +++k +++ +++             +++ +k+ k++e+++  ++l++ +  ++eK +++  ++ ++d+ ++
  CCD24626.1  97 IRSDLEQLWELDNIVTNTKKLNSTGVQETTsddlsieellGQSQSKKEDKDDEFHTALKKLRNRMSKAQEKNTVTGNLASVLDNLTN 183
                 677899999***********995555555556666666669999*************************************999876 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 7.5
                 HHHHHHHHHHHHH CS
         ING  29 kvqellkeidski 41 
                  +q++lkei++ +
  CCD24626.1 229 ICQNVLKEINTTM 241
                 5777777776544 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 10
                 HHHHHHHHHHHHHHH CS
         ING  17 qrnltelreiDakvq 31 
                 + +l+el ++D k++
  CCD24626.1 384 SFLLKELTAVDLKYK 398
                 667899999999985 PP

>> Lipoxygenase  Lipoxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   1.6e-05     0.029     557     648 ..      75     167 ..      72     192 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.6e-05
                   TTTS----BS----TTSHHHHHHHH-HHHHH.HCTS--HHHHHHHHHHHHHHT-B-TT--BTT--SSTTS-S-HHHHHHHHHHHHHHHHHHHH CS
  Lipoxygenase 557 lpnrptlarrliPeegskeyeellenpekvf.lktlpsqlqatlvlavlevlskHssdeeylgqreepewtedeevleafekfseklkeiekk 648
                   + n+ +++ +++ +e++k++ ++ ++ e+ + l+ + ++++ +    v e+ s   s ee lgq+++++  +d+e ++a +k ++++++ ++k
    CCD24626.1  75 VSNKNAIVNEVLRNEDTKQLGSIRSDLEQLWeLDNIVTNTKKLNSTGVQETTSDDLSIEELLGQSQSKKEDKDDEFHTALKKLRNRMSKAQEK 167
                   5789999999999*************99987699*****************************************************987654 PP

>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.7     8e-05      0.14      30      97 ..     136     214 ..     131     271 .. 0.76
   2 ?   -0.6   0.0      0.61   1.1e+03      45      65 ..     306     325 ..     304     332 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 8e-05
                 HCCHHHCHTS--HHHHHHHHHHHHHT...........T-HHHHHHTTSS---....S-TTHHHHHHHT-SSHHHHHHHHHTTX CS
    Clathrin  30 Lekvlkedskenpalqtallelyaky...........ddpqeleeflkknnn....ydlekvaklcekadlyeeavilykkin 97 
                 L + +++++ ++ +++tal +l  ++           +    l ++l++++n    + l+ +a+ c  ++ y+eav ly++ n
  CCD24626.1 136 LGQSQSKKEDKDDEFHTALKKLRNRMskaqekntvtgN----LASVLDNLTNitdlMELPYLARTCIRTGHYQEAVMLYTHTN 214
                 55555544445556666666655555555555554432....444444444444459**********************9854 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.61
                 HHHHHHHHHHTT-HHHHHHTT CS
    Clathrin  45 qtallelyakyddpqeleefl 65 
                 +++l+e+++k + +++l+e++
  CCD24626.1 306 NDSLMEMMVKRK-IEVLREHI 325
                 5789********.8*****98 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0    0.0001      0.18       4      24 ..     192     212 ..     191     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.0001
       TPR_7   4 nLarlysrlGdyeeAielyeq 24 
                 +Lar++ r G+y+eA+ ly+ 
  CCD24626.1 192 YLARTCIRTGHYQEAVMLYTH 212
                 69**************99998 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1    0.0001      0.18      12      61 ..      51     105 ..      39     106 .. 0.78
   2 ?   -0.8   0.1         1   1.9e+03      41      55 ..     152     166 ..     131     185 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.0001
  ABC_tran_CTD  12 eleaeIeaLEeeiaeleaeladpelysdpek......laelsaeleeleaeLeely 61 
                   ++ +eI+++++ei++le ++ d  +  + ++       +e +++l  ++++Le+l 
    CCD24626.1  51 TITEEIAEIDAEISNLERKMRDLLVS-NKNAivnevlRNEDTKQLGSIRSDLEQLW 105
                   5889*****************98665.44332334556788888999999999885 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1
  ABC_tran_CTD  41 eklaelsaeleelea 55 
                   ++l++l +++ ++++
    CCD24626.1 152 TALKKLRNRMSKAQE 166
                   334444444444443 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00013      0.23      29      77 ..      27      73 ..      19      78 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
  Lzipper-MIP1 29 aLekal...ssssdgsllslstllpkkakellkeiallEeevvkLEqkllsL 77
                  aL++ l   ++s+d+    +s  +   ++e+++ei    +e+++LE+k+ +L
    CCD24626.1 27 ALRDILqsdNKSYDT--YFSSRASSGTITEEIAEID---AEISNLERKMRDL 73
                  555555321133433..2233335678888888888...**********998 PP

>> TypeIII_RM_meth  Type III restriction/modification enzyme methylation subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   9.7e-05      0.17      11      47 ..     418     454 ..     413     456 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.7e-05
  TypeIII_RM_meth  11 neeikehFfeevdgvlvFdkekFaefienkeflpdSY 47 
                      n+++++ F+++v +  +F+ke+++++i++++ l   Y
       CCD24626.1 418 NANFHKLFLNQVYESGLFKKEQLINAIKKRSELASVY 454
                      789**************************99887665 PP

>> FlgN  FlgN protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.3      0.02        35      42     107 ..      51     118 ..      50     120 .. 0.64
   2 ?    7.0   4.3    0.0042       7.6      32     114 ..      86     175 ..      84     184 .. 0.71
   3 ?   -2.9   0.0       4.9   8.9e+03      58      82 ..     227     250 ..     224     266 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCT.......TCCHHHHHHHHHHHHHHHHHHHHH CS
        FlgN  42 elleekqellekleqleqkrakllaelglsaeeatlsellak.......eedeelkelwqelkelleelkeln 107
                 +++ee++e+ ++++ le+k++ ll   ++      ++e+l++       + +  l++lw el++++ + k+ln
  CCD24626.1  51 TITEEIAEIDAEISNLERKMRDLLVSNKNA----IVNEVLRNedtkqlgSIRSDLEQLW-ELDNIVTNTKKLN 118
                 588888888899999999999999888888....5555555522222222555666666.6666666666666 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0042
                 HHTTHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHTT--.SCHHHHHHHHCT......TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        FlgN  32 LkagdieaLeelleekqel..lekleqleqkrakllaelgls.aeeatlsellak......eedeelkelwqelkelleelkelnelNgrli 114
                 L+++d+++L ++  + ++l  l+++ ++ +k+  +  +   + +++++++ell +      ++d+e  ++ ++l++++ +++e+n+  g+l 
  CCD24626.1  86 LRNEDTKQLGSIRSDLEQLweLDNIVTNTKKLNSTGVQE--TtSDDLSIEELLGQsqskkeDKDDEFHTALKKLRNRMSKAQEKNTVTGNLA 175
                 566666666666666666622333333333333333222..257999999999999999999***********************9988875 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.9
                 HHHHHHHHHHTT--SCHHHHHHHHC CS
        FlgN  58 eqkrakllaelglsaeeatlsella 82 
                 e+ ++++l+e++++   ++l +ll+
  CCD24626.1 227 EEICQNVLKEINTT-MLTGLVKLLS 250
                 67777777777777.4444444444 PP

>> ESM4  Enhancer of split M4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   6.2      0.18   3.2e+02       9      97 ..      76     167 ..      62     186 .. 0.64
   2 ?    5.7   0.0      0.01        18       4      39 ..     232     267 ..     228     290 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.18
        ESM4   9 ksesntiaenkansekkavrrlkkvlkp...Lrrllkkggkgrkteltlahpnnvdlentqqqqqqqqeeldednssn...aeLeqqlveeevek 97 
                 +++++ ++e   n+ +k+  +++  l     L  +++ ++k  +t ++++   + ++e+   q+q++  ++d+d++     ++L++++++ + ek
  CCD24626.1  76 SNKNAIVNEVLRNEDTKQLGSIRSDLEQlweLDNIVTNTKKLNSTGVQETTSDDLSIEELLGQSQSK--KEDKDDEFHtalKKLRNRMSKAQ-EK 167
                 5666666666667777776666655444000677899999999999999999889999855444444..55667766622345555555544.44 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.01
        ESM4   4 dtknlksesntiaenkansekkavrrlkkvlkpLrr 39 
                 ++ +  ++++ +   k  s++++v ++kk+lk L+ 
  CCD24626.1 232 NVLKEINTTMLTGLVKLLSTSSTVNSMKKILKYLAA 267
                 4444455666666678999*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1342  (0.0748508); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.39
# Mc/sec: 3556.19
//
Query:       CCD24627.1  [L=1495]
Description: hypothetical protein NDAI_0D03130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-64  215.3   1.0    7.7e-22   77.5   0.0    5.7  5  C2        C2 domain
     0.0025   17.3   0.0       0.26   10.7   0.0    2.5  1  SMP_LBD   Synaptotagmin-like mitochondrial-lipid-binding doma
     0.0099   15.7   1.2       0.63    9.8   0.0    3.5  3  DOCK-C2   C2 domain in Dock180 and Zizimin proteins


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   9.2e-16   5.5e-12       2      98 ..     469     570 ..     468     575 .. 0.87
   2 !   23.3   0.0     1e-08   6.1e-05       7      92 ..     633     718 ..     627     727 .. 0.79
   3 !   47.9   0.0   2.2e-16   1.3e-12       3     101 ..     764     861 ..     762     862 .. 0.93
   4 !   77.5   0.0   1.3e-25   7.7e-22       1      98 [.    1097    1194 ..    1097    1199 .. 0.94
   5 !   13.8   0.0   9.1e-06     0.054      32      91 ..    1393    1454 ..    1366    1464 .. 0.79

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 9.2e-16
                 EEEEEEEEEESSSSSST.TSSCEEEEEEEE.....ECEEEEEE-SCSSSSS.SEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHT CS
          C2   2 klevtvieAknLpnkdk.kgssdpyvkvsl.....dgkqkakTrviknsln.PvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstlls 93 
                  l vt ++A++L+  d  ++++dpy++++      ++ +  +++ ik+ ++ P+Wne+ ++ ++   ++kL++++fd++ ++kd +iG +ei+l +lls
  CCD24627.1 469 VLAVTLKSAEGLKGSDFiTNTVDPYIVLKTektpnNEIKDIRSS-IKSDIKdPRWNETKYLLLPT-LNQKLTFSCFDFNDVRKDTLIGDIEIDLGSLLS 565
                 699************99999************998888888888.5555444*************.***********8888***************766 PP

                 THHHH CS
          C2  94 geeae 98 
                 + ++e
  CCD24627.1 566 EPNQE 570
                 65554 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 1e-08
                 EEEEESSSSS.STTSSCEEEEEEEEECEEEEEE-SCSSSSS.SEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHH CS
          C2   7 vieAknLpnk.dkkgssdpyvkvsldgkqkakTrviknsln.PvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstll 92 
                   + k L     ++g+ +p +k+++dg+ k+  r  ++  n P Wne+ ++ +  ++++k+++++fd++  ++++++ + + ++++ll
  CCD24627.1 633 LQKVKYLDTStSVTGNLSPSAKLYIDGQLKKSYRALRRI-NePSWNEETEILIGSKSTSKITIKIFDERI-GGSEVLCEYSSNVEDLL 718
                 5555556333144999*********77777777766666.55*************************998.99999999999888855 PP

  == domain 3  score: 47.9 bits;  conditional E-value: 2.2e-16
                 EEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHHHHEEE CS
          C2   3 levtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsgeeaegwy 101
                 +++ v++Ak   n  + g +dpy +v+l++++k+k++  +n ++Pv++e  +++v+  e+++++v++ d++++++d  iG v++p+s+  ++++++g y
  CCD24627.1 764 IKIDVVKAKVTSNLSGLGDIDPYFSVQLNRHTKYKSKYYSNCVEPVFHEAAYIPVTS-ENQHITVSLIDYQSVGSDRPIGSVQLPVSSYVKKNKETGEY 861
                 68999****999999999*******************99******************.******************************88888777766 PP

  == domain 4  score: 77.5 bits;  conditional E-value: 1.3e-25
                  TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTHHH CS
          C2    1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsgeea 97  
                  g+l+++ i+A nL   d +g+sdp+v++++d+k+ +kT++ik++l+PvWne+ +++++   + +L + Vfd+dr +++d +G v+i+l++l+ ++ +
  CCD24627.1 1097 GYLKLKFISADNLMSADRNGKSDPFVVAYVDRKKEYKTQIIKKTLSPVWNETAKIPIPARDRNQLILNVFDWDRAGDNDDLGAVKIDLTELEPEKTY 1193
                  689***********************************************************************999999**********7776665 PP

                  H CS
          C2   98 e 98  
                  +
  CCD24627.1 1194 D 1194
                  4 PP

  == domain 5  score: 13.8 bits;  conditional E-value: 9.1e-06
                  CEEEEEE-SC..SSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH..H CS
          C2   32 gkqkakTrvi..knslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplst..l 91  
                   k+ +kTrv   +++   v+ne + f+ ++  ea+L +    +++lskd+ +G ++++l +  +
  CCD24627.1 1393 MKHLYKTRVQkaNDNGTNVFNEACAFKASP--EATLVIGAVAHHKLSKDKSLGIAQVNLGDpqI 1454
                  57889***9844444558********9999..88999988888888************998432 PP

>> SMP_LBD  Synaptotagmin-like mitochondrial-lipid-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   4.4e-05      0.26       3      91 ..     251     340 ..     249     455 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 4.4e-05
                 B--HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTT-GG..GTTEEEEEEE--SS--EEEEEEEE-TT--TTSEEEEEEEEEEEEEEEEEE CS
     SMP_LBD   3 eraewlnktvkhmwpficqfieklfretiepavrganth..lstfsftkvdvgqqplringvkvytenvdkrqiildlqisfvgnceidle 91 
                 e + wln  + ++w +   ++   ++e+++p +    +   + ++s+ +  +g +   i g+k yt+   k  + +d   +f  n e d+ 
  CCD24627.1 251 ETTLWLNSFLSKFWVIYMPVLSSQVKEAVNPILASVVPGygIDALSLEEFTLGSKAPAIRGIKSYTKT-GKNSLEMDWSFAFTPNDESDMT 340
                 66789*********999999999********9988876422788999999*****99********975.7899999999999999887753 PP

>> DOCK-C2  C2 domain in Dock180 and Zizimin proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.04   2.4e+02      53      98 ..     503     548 ..     470     578 .. 0.78
   2 ?   -0.2   0.2      0.13   7.5e+02     117     159 ..     813     877 ..     788     904 .. 0.55
   3 !    9.8   0.0    0.0001      0.63      55      87 ..    1128    1160 ..    1072    1167 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.04
     DOCK-C2  53 eelvsefrsvvlyhnkqptfneeiKialpieltekhHLlFtfrhvs 98 
                 ++  +  rs++  + k p++ne+  + lp+   + ++  F f +v 
  CCD24627.1 503 NNEIKDIRSSIKSDIKDPRWNETKYLLLPTLNQKLTFSCFDFNDVR 548
                 44667899***************99999998888777777777776 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.13
     DOCK-C2 117 yaflpLlkedgraflk............dgehelpvy...kkelppsgYlslpssr.......ts 159
                  a++p ++e++++ ++             g+ +lpv+   kk+ +++ Y  +++++       ++
  CCD24627.1 813 AAYIPVTSENQHITVSlidyqsvgsdrpIGSVQLPVSsyvKKNKETGEYEDNSKTAaptifslKN 877
                 57888887655555445555555554444778888874442333445777665554554443322 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0001
     DOCK-C2   55 lvsefrsvvlyhnkqptfneeiKialpieltek 87  
                   ++e+++ ++ ++ +p +ne+ Ki +p+ + ++
  CCD24627.1 1128 RKKEYKTQIIKKTLSPVWNETAKIPIPARDRNQ 1160
                  5789***********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.89u 0.25s 00:00:01.14 Elapsed: 00:00:00.39
# Mc/sec: 11409.00
//
Query:       CCD24628.1  [L=176]
Description: hypothetical protein NDAI_0D03140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-38  130.1   1.7      7e-38  129.6   1.7    1.2  1  Ribosomal_L6e  Ribosomal protein L6e


Domain annotation for each model (and alignments):
>> Ribosomal_L6e  Ribosomal protein L6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6   1.7   3.9e-42     7e-38       1     111 []      71     176 .]      71     176 .] 0.94

  Alignments for each domain:
  == domain 1  score: 129.6 bits;  conditional E-value: 3.9e-42
  Ribosomal_L6e   1 lNgvPLrRvnqryVIatstkvdlsgvdekipeklndeyFkkekkkkkkkkkeeelfeekkekkelseerkadqkavDkallaaikkekllkkYLks 96 
                    +NgvPLrRvn+ryVIatst+v+++gv  ++++ +n eyF+kek +kk+ kke++lf e++ ++e+s++r++dqk+vDkalla+ikk++llk+YL+s
     CCD24628.1  71 VNGVPLRRVNARYVIATSTNVSVEGV--NVEK-FNVEYFTKEKLSKKE-KKEANLFPEQQ-NREVSATRVEDQKSVDKALLAEIKKTPLLKQYLAS 161
                    7*************************..7777.999******998887.999****8875.559******************************** PP

  Ribosomal_L6e  97 kFsLrkgdyphelkF 111
                    +FsL++gd+ph lkF
     CCD24628.1 162 SFSLKNGDKPHLLKF 176
                    **************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       895  (0.0499191); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1285.51
//
Query:       CCD24629.1  [L=1188]
Description: hypothetical protein NDAI_0D03150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-62  212.1   0.0    1.5e-62  211.6   0.0    1.3  1  Piwi      Piwi domain
    1.6e-51  173.7   0.4    1.6e-51  173.7   0.4    2.5  2  AGO_N     Argonaute N domain
    4.6e-42  142.4   1.5    2.3e-41  140.1   1.5    2.4  1  Ago_N_1   Fungal Argonaute N-terminal domain
     0.0048   17.5   0.1      0.019   15.6   0.1    2.1  1  ArgoN     N-terminal domain of argonaute
  ------ inclusion threshold ------
      0.013   15.3   1.7      0.032   14.0   1.7    1.6  1  PAZ       PAZ domain
       0.16   11.4   0.1       0.16   11.4   0.1    2.1  2  UPF0524   UPF0524 of C3orf70


Domain annotation for each model (and alignments):
>> Piwi  Piwi domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.6   0.0   5.1e-66   1.5e-62       2     301 ..     829    1146 ..     828    1147 .. 0.91

  Alignments for each domain:
  == domain 1  score: 211.6 bits;  conditional E-value: 5.1e-66
                  EEEEECS.SGHHCHHHHHHHHHHTCCCCEEEEEHHHHCTCCHHHHHHHHHHHHHHHHTT-BS-EEESSSTTSSE.........EEEEEEEEEECCCS CS
        Piwi    2 ilvilpe.kkkdkyheikkyletdlgiisqcillktilkrqlkkqtltnvllkinvKlGgknvliveikleldv.....sptliiGidishgtagtv 92  
                  +l+il+  + + +y+ +k   + + g+i  c+ +++ +k+  + q+  n ++k+n+Kl g+n  + e +l+l +      p +++G+d++h ++++ 
  CCD24629.1  829 FLFILACgDDSLTYNRLKYLADLKYGVINSCLVWDKFKKK--SAQYNVNACMKMNLKLQGINHCLEEKDLNL-LkdsngLPFMVLGADVTHYPEKD- 921 
                  78999987778889999999999*****************..78******************6666666554.235588899***********999. PP

                  CCCEEEEEEEEEETSSEEEEEEEEESS.CCCCHHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEESS....S..S-HHHHHHHHHHHHHHHHHC.... CS
        Piwi   93 dnpsvaavvasldkensrylaevstqa.ssqelleklkeiikellrefkksskkkkperiivyRdGvseGqfkqvlnsEvkelkealkklkeq.... 184 
                   + s+a++vas+d++ +++ ++  +q+ +++e++  + + i + l+ +kk ++ k+p++i++yRdGvse+qf+qv+++Ev++lke l++++++    
  CCD24629.1  922 -QNSIASLVASFDNHFAQFPGNYLLQSsPGEEMISGIGNLIGDRLKLYKKYNNGKLPSKILFYRDGVSESQFSQVVQIEVRALKESLRRIGSNlrgs 1017
                  .9*****************9999988626999********************************************************888763333 PP

                  .TTTEEEEEEEECSCS--E...EESESTC........CCEETTTCEEETTEEEEEEEECCEEECCCCEEEEEEEEEEEEEEES..S-CCHHHHHHHH CS
        Piwi  185 .yqpkltvivvqkrhhtrf...Fasdkae........ksqnippGtvvdkkitlpeekdfylcshaglqgtvkPtkytvlvdeaklsadelqsltyk 269 
                   y+p +t + v kr++ rf   F++ ++e           n+ pGtvvd  it+++ +df+l s+++l+gt  P +y  ++de+++++d lq +t+ 
  CCD24629.1 1018 pYNPAITTVAVVKRNQVRFmplFKNGINEqgetcavqSMDNVMPGTVVDRGITSTAHFDFFLQSQQSLKGTGVPGHYWCIYDENEFTSDLLQYITHC 1114
                  366*************9986668888888*******9999********************************************************* PP

                  HCTGGTTTTSS-SS-HHHHHHHHHHHHHHTCC CS
        Piwi  270 lchmyqrstrsvsiPapvyyAhklAkrvrnnl 301 
                   c+++ rs++s+++  p+yyA++l +r+++  
  CCD24629.1 1115 FCYLFGRSSTSIKVASPIYYADLLCERAAQLF 1146
                  ***************************99865 PP

>> AGO_N  Argonaute N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   2.3         6   1.8e+04      84      99 ..      56      71 ..      45      92 .. 0.61
   2 !  173.7   0.4   5.2e-55   1.6e-51       1     122 []     221     340 ..     221     340 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 6
                ---------------- CS
       AGO_N 84 snkqkkkkasvkeaks 99
                  k+kkk++s+++ + 
  CCD24629.1 56 RGKKKKKNKSKESSDD 71
                3444444444433333 PP

  == domain 2  score: 173.7 bits;  conditional E-value: 5.2e-55
                 TTTS-EEEEEEEEE.-----------------HHHHHHHHHHHHHS-TTTGGGTTSEEE-SSSEEEESS-GGGSTT-TT-------------------- CS
       AGO_N   1 WWkkafiytyhidfkapqkkekpkkgpppelskpkkyeliealfeedetllkykdriafnGedtlyshvpleeftlfdgcWdvsnkqkkkkasvkeaks 99 
                 WW++a+i++yh+dfka+q k++++k p++  +++kkye++e+lfeedetl+kykdriafnGedtlyshv+leeftlf+gcW+vsnk+ kk+a++ ++ +
  CCD24629.1 221 WWRDAMIFSYHVDFKASQPKYPTQK-PSTGSFQTKKYEILESLFEEDETLFKYKDRIAFNGEDTLYSHVRLEEFTLFEGCWAVSNKK-KKHAYIPHLPH 317
                 **********************999.***********************************************************99.8999******* PP

                 --------GGGGEEEEEEEEEEG CS
       AGO_N 100 kekeeleelasqitlkftskvsl 122
                 k++  +++l s++tlk++++++l
  CCD24629.1 318 KSNPPEDDLPSKVTLKSNATIPL 340
                 *******************9987 PP

>> Ago_N_1  Fungal Argonaute N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   1.5   7.8e-45   2.3e-41       1      94 [.     437     533 ..     437     534 .. 0.98

  Alignments for each domain:
  == domain 1  score: 140.1 bits;  conditional E-value: 7.8e-45
                 -SSS-TTSHHHHH-TT----HHHHHHHHHHHHH...HHHSTTTS----CCHHHHHHHH-HHHHCCCTT-EEE-TT-------------------EE- CS
     Ago_N_1   1 htkylPGdpkfkenekeqytlldWilecykqae...aarkaktkgkpsakdlnlfveknkdikdllkGlkvyrpyinysvnpdGtpkppkkrkskgi 94 
                 h+kylPGdp+f++n+k+ ytl+dW++ecy+q++   +a++++++gk++++dlnlf++kn+++++l+kGlkvy+++i+y+v+++G++kp++k+k k+i
  CCD24629.1 437 HSKYLPGDPRFQDNHKAPYTLMDWLIECYQQTDpnnVAKRPAFNGKVTSNDLNLFISKNTELQNLTKGLKVYCNHIQYDVDSYGQKKPSAKMKPKQI 533
                 9******************************998878899*******************************************************99 PP

>> ArgoN  N-terminal domain of argonaute
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   6.3e-06     0.019      16     115 ..     223     343 ..     192     371 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 6.3e-06
       ArgoN  16 pdktlyhYdveit.........kka.krvg....lrriiellleeykksela.gkkpayDgrknlysakkLpkefedlpa.................ae 82 
                  d  ++ Y+v+++         k++    +    + +i+e l+ee+ ++ ++ + ++a+ g+ +lys ++L +ef+ ++                  + 
  CCD24629.1 223 RDAMIFSYHVDFKasqpkyptqKPStG--SfqtkKYEILESLFEED-ETLFKyKDRIAFNGEDTLYSHVRL-EEFTLFEGcwavsnkkkkhayiphlP- 316
                 567899999877666676766422223..14455577******854.68899899****************.33332221444555566655543331. PP

       ArgoN  83 esakkepsekrrrksrtfkvtikfaksinlqsL 115
                       ++++ ++++   kvt+k   +i l+++
  CCD24629.1 317 ------HKSNPPEDDLPSKVTLKSNATIPLKDI 343
                 ......122222333345677777655666666 PP

>> PAZ  PAZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.7   1.1e-05     0.032      26     125 ..     501     614 ..     482     622 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.1e-05
                 CCTTBEEEETTTTS-.............CEEEEEEEESS--TTSEECCTTCT...............CECCHHHHCCT---ST-TT--EEEEEES-SS- CS
         PAZ  26 alkgliVmtwynnrn.............ktyyvadittdlapsstFpdkdke.............neitfaeYfkkkYnieikdqdqplldvdkktese 98 
                   kgl+V++++ + +             k   +++++ ++a+ ++F+ k ++               it + Yf kkY++ +k  d+ +   dk     
  CCD24629.1 501 LTKGLKVYCNHIQYDvdsygqkkpsakmKPKQIKGFSIESARVYKFKVKPSDldnniaktnyerdISITTETYFLKKYKMVLKYPDMKMAYLDK----- 594
                 5678888888866223344445667667777888999999999999999877889999999988889***************766666666666..... PP

                 ---EEEEE-CCCCEEESSBCCCCCTCC CS
         PAZ  99 hssqkqiLvpElcdihpisasqrykkk 125
                       ++++E ++i   +++q+ k k
  CCD24629.1 595 ----GGYVPLECLTI---VPGQKLKGK 614
                 ....6799***9999...999987765 PP

>> UPF0524  UPF0524 of C3orf70
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.8       1.4   4.1e+03     145     183 ..      38      76 ..      26     109 .. 0.68
   2 ?   11.4   0.1   5.3e-05      0.16      82     151 ..     638     707 ..     621     725 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.4
     UPF0524 145 eeaekkeaavkqlkkekvkgpkldhcsspsssedsgina 183
                 e++ + +++++++kk++v+g k  +  s  ss+d+  n 
  CCD24629.1  38 ESSYRLHENESESKKNTVRGKKKKKNKSKESSDDASKNG 76 
                 333334444556778888888888888888888887664 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.3e-05
     UPF0524  82 dlsislaerflklapsfkapllpespkycvisdlfiddyvvkringkmcyvqrpapkveeakkeeaekke 151
                  l++ l+ + lk     k p++  + ++  i   +id   +k  n ++cy ++p + +   k+ ++++++
  CCD24629.1 638 ALALPLITKALKPEEETKQPPCDSYYQFLRIPSRIIDAPAIKFQNSQICYTDKPFNASVVDKTIPNQETK 707
                 47788999999*9****************************************87665544444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1206  (0.0672653); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.88u 0.26s 00:00:01.14 Elapsed: 00:00:00.44
# Mc/sec: 8156.33
//
Query:       CCD24630.1  [L=387]
Description: hypothetical protein NDAI_0D03160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.4e-29   99.9   0.2    2.3e-28   98.4   0.0    1.9  2  FKBP_C           FKBP-type peptidyl-prolyl cis-trans isomeras
    1.5e-22   80.1   2.6    1.5e-22   80.1   2.6    2.6  2  NPL              Nucleoplasmin-like domain
  ------ inclusion threshold ------
       0.67   10.0  21.4       0.89    9.6   1.0    2.2  2  Peptidase_S49_N  Peptidase family S49 N-terminal
        1.2    7.5   0.0        1.2    7.5   0.0    2.0  3  DcuC             C4-dicarboxylate anaerobic carrier
        2.1    8.4  23.5        2.9    8.0  11.8    2.1  2  CCSAP            Centriole, cilia and spindle-associated
        3.9    7.8   9.0         15    6.0   4.8    2.2  2  DUF4228          Domain of unknown function (DUF4228)
        4.8    7.9  21.4        1.1    9.9   2.0    2.3  2  AATF-Che1        Apoptosis antagonizing transcription factor


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.6   1.2e+04      63      91 ..     128     154 ..     124     155 .. 0.64
   2 !   98.4   0.0   8.9e-32   2.3e-28       2      94 .]     296     384 ..     295     384 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.6
                 EEEEGGGTTTTTTBCTTTB.TTSEEEEEE CS
      FKBP_C  63 ltippelaYgekglaggvippnatLvFev 91 
                 +t  p+ ++++      +i+p++++ F v
  CCD24630.1 128 VTLSPKSQFQQALD--ITIAPEEDVQFVV 154
                 55666666666555..3488888888876 PP

  == domain 2  score: 98.4 bits;  conditional E-value: 8.9e-32
                 SCBB-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   2 keeakegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 ++ +k+g+++ + y gkl++gkvfd++ +++kp++fk+G g+vikG++ ++ gm vG++r+++ip ++aYg++ l g  ip+n++L F+v+L+
  CCD24630.1 296 PQ-VKKGSKIGMRYIGKLKNGKVFDKN-TNGKPFSFKLGHGEVIKGWDIGVAGMAVGGERRIIIPAPYAYGKQALPG--IPANSQLTFDVKLV 384
                 55.89**********************.9**********************************************66..************95 PP

>> NPL  Nucleoplasmin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   2.6   5.8e-26   1.5e-22       2     105 .]      10     167 ..       9     167 .. 0.81
   2 ?  -12.7  13.6         7   1.8e+04      38      49 ..     228     239 ..     178     288 .. 0.61

  Alignments for each domain:
  == domain 1  score: 80.1 bits;  conditional E-value: 5.8e-26
                 EEEEE-STTEEE...E-TTSSEEEEEEEE-TT.......................................................-BT-EEEEEEEE CS
         NPL   2 yGlevppgkpvt...lavpadlritmaaldpsa...................................................ekekekgrvtlkvkv 46 
                 y l+++p  p +   +++p ++ritmaal+p+a                                                   +k++++++++ + ++
  CCD24630.1  10 YNLNIEPYTPTPaidIDMPVTIRITMAALNPEAydkdktpstlrvikrnpdyndgdiddvlngdfdedemddasseeeeeeekeTKKSKTKKSKKEEES 108
                 566777777555334669999**********99*****************************************9776554332111222233333333 PP

                 GGGT.................EEEEEEEEEBTTBSEE---EEEESS-EEEEEEES---EEEEEEEE CS
         NPL  47 ekkkekeke.......eeeeleefvlctLdpeknyqqpldltfsegeevffkvtGthtVhLtGnyv 105
                 e       e        ++e+eefvl tL+p+++ qq+ld+t+ ++e+v f+vtG++++ L+Gnyv
  CCD24630.1 109 E-------EdsededdIDDEFEEFVLVTLSPKSQFQQALDITIAPEEDVQFVVTGSYSISLSGNYV 167
                 3.......1445555599***********************************************7 PP

  == domain 2  score: -12.7 bits;  conditional E-value: 7
                 -EEEEEEEEGGG CS
         NPL  38 grvtlkvkvekk 49 
                 ++ + k k +k+
  CCD24630.1 228 SKKETKNKKRKQ 239
                 111111111111 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.0   0.00035      0.89      61      92 ..      78     109 ..      29     128 .. 0.57
   2 ?    5.3  13.4    0.0074        19      52     108 ..     209     265 ..     186     279 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00035
  Peptidase_S49_N  61 lldeeelkaaekkekkeekeekkaekkkakee 92 
                       +d+++  ++e +ek+++k+++k++kk++++e
       CCD24630.1  78 EMDDASSEEEEEEEKETKKSKTKKSKKEEESE 109
                      33333333333333333333333333333321 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0074
  Peptidase_S49_N  52 elkeeleealldeeelkaaekkekkeekeekkaekkkakeeeekkrvfvldFkGdik 108
                      + + ++ee   +eee k+++kke k++k+++++e k++ e++++krv  +dFk d++
       CCD24630.1 209 DEEVKIEEIEENEEEIKKESKKETKNKKRKQEEEAKAEAESNKSKRVKKVDFKKDLE 265
                      445567777777888888888888888888877766666788999999999999886 PP

>> DcuC  C4-dicarboxylate anaerobic carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.2   3.1       3.4   8.7e+03     221     248 ..      96     121 ..      83     130 .. 0.52
   2 ?    7.5   0.0   0.00046       1.2     202     251 ..     150     199 ..     146     204 .. 0.87
   3 ?   -8.4   5.0         7   1.8e+04     231     248 ..     231     248 ..     221     258 .. 0.36

  Alignments for each domain:
  == domain 1  score: -5.2 bits;  conditional E-value: 3.4
        DcuC 221 kikkdpvysekdeskelfskeksesees 248
                 k k ++  s+k+e+ e  s+++++++ +
  CCD24630.1  96 KSKTKK--SKKEEESEEDSEDEDDIDDE 121
                 333333..44444444444444444444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00046
        DcuC 202 lvlviltlisiaflyfYakkikkdpvysekdeskelfskekseseesfsk 251
                 ++ v+    si+ + +Y+k  ++ p+++++de++  +  + +e++e++s+
  CCD24630.1 150 VQFVVTGSYSISLSGNYVKHPFDTPMMDDEDEHEDEEDYDSEEDDEEYSS 199
                 567888899************************99999999888888655 PP

  == domain 3  score: -8.4 bits;  conditional E-value: 7
        DcuC 231 kdeskelfskeksesees 248
                 + ++k++ ++e+++ e++
  CCD24630.1 231 ETKNKKRKQEEEAKAEAE 248
                 222222222222222222 PP

>> CCSAP  Centriole, cilia and spindle-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.9    0.0036       9.1      95     128 ..      79     112 ..      36     138 .. 0.54
   2 ?    8.0  11.8    0.0011       2.9      76     169 ..     185     276 ..     155     299 .. 0.43

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0036
       CCSAP  95 ekaseeeteekevkekekqqakaeasksekekke 128
                  + +++e+ee+e+ke +k+++k++++++e+e++ 
  CCD24630.1  79 MDDASSEEEEEEEKETKKSKTKKSKKEEESEEDS 112
                 2223333333333333332222221111111111 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0011
       CCSAP  76 kleeeeeekeeeraaaeeeek.aseeeteekevkekekqqakaeasksekekkekekseskqqkpkssalakrekrksakspqqpsekkkenrhP 169
                 +++  +ee  ee ++ae++ +  s+ee + +e +e+e+ ++k+e++k++k+kk+k+++e+k +   +s+ +kr k++  k++ ++  +kk+  +P
  CCD24630.1 185 EEDYDSEEDDEEYSSAEDDLDdISDEEVKIEEIEENEE-EIKKESKKETKNKKRKQEEEAKAEA--ESNKSKRVKKVDFKKDLEEGPTKKKDEKP 276
                 22222222111111122222212222333333333222.3333322222222222222222222..23444444444444444444444444444 PP

>> DUF4228  Domain of unknown function (DUF4228)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1      0.02        51     126     154 ..      83     109 ..      32     155 .. 0.64
   2 ?    6.0   4.8    0.0057        15      95     155 ..     214     268 ..     176     303 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.02
     DUF4228 126 sssesskgssssgrsrsrvlelkrelser 154
                 ss+e++++++++++s+ + +  k+e ++ 
  CCD24630.1  83 SSEEEEEEEKETKKSKTKKS--KKEEESE 109
                 22222222222222222222..1111111 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0057
     DUF4228  95 klalkaskalaakkkkskkkrrs.aaakk.sqssssesskgssssgrsrsrvlelkrelsere 155
                  +++++++++ +k+        s +++k+ ++++++e++++++s++++r++ + +k++l+e  
  CCD24630.1 214 IEEIEENEEEIKKE--------SkKETKNkKRKQEEEAKAEAESNKSKRVKKVDFKKDLEEGP 268
                 33322222222222........11222223555666777777777777788887778777763 PP

>> AATF-Che1  Apoptosis antagonizing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.0   0.00043       1.1      85     133 ..      82     130 ..      30     132 .. 0.65
   2 ?    3.4  11.8     0.045   1.2e+02      41     116 ..     185     253 ..     167     275 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00043
   AATF-Che1  85 laeskeeeekkkskrkrkkkkkeetsleelwkeleklekalkpfrnatl 133
                 +++++eeee+k++k++++kk+k+e+++ee +++ ++ ++++++f   tl
  CCD24630.1  82 ASSEEEEEEEKETKKSKTKKSKKEEESEEDSEDEDDIDDEFEEFVLVTL 130
                 2344444445555555555555555556558888888888888876665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.045
   AATF-Che1  41 lkefles..seefeealeeaekalkklleslleLreelleqne.ikklaeskeeeekkkskrkrkkkkkeetsleelwk 116
                  +    +  see +e++++ae++l ++ ++ +++ e   e++e ikk    ++++e+k++krk++++ k+e ++++ +k
  CCD24630.1 185 EE----DydSEEDDEEYSSAEDDLDDISDEEVKIEEIE-ENEEeIKK----ESKKETKNKKRKQEEEAKAEAESNK-SK 253
                 23....1347999*********************9999.55556774....2223444455555544444443333.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3303  (0.184227); expected 358.6 (0.02)
Passed bias filter:                      949  (0.052931); expected 358.6 (0.02)
Passed Vit filter:                       363  (0.0202465); expected 17.9 (0.001)
Passed Fwd filter:                       187  (0.01043); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.64u 0.34s 00:00:01.98 Elapsed: 00:00:00.51
# Mc/sec: 2292.79
//
Query:       CCD24631.1  [L=1073]
Description: hypothetical protein NDAI_0D03170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.5e-143  477.5   0.1   3.6e-143  477.0   0.1    1.2  1  HMG-CoA_red     Hydroxymethylglutaryl-coenzyme A reductase
      2e-46  157.7   1.0    4.6e-46  156.5   1.0    1.7  1  HPIH            N-terminal domain with HPIH motif
     0.0054   16.6   8.9     0.0054   16.6   8.9    2.2  2  Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activ


Domain annotation for each model (and alignments):
>> HMG-CoA_red  Hydroxymethylglutaryl-coenzyme A reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  477.0   0.1    6e-147  3.6e-143       2     367 .]     655    1034 ..     654    1034 .. 0.97

  Alignments for each domain:
  == domain 1  score: 477.0 bits;  conditional E-value: 6e-147
                   HHHHHHHHHH...S-HHHHHHHTT----.HHHHHHHSSS---------EEEEEEEETTEEEEEEE---STTHHHHHHHHHHHHHHTT-B.EEEE-- CS
  HMG-CoA_red    2 veeRrkllee...lteeeleelkeesld.eevadkmiEnviGyvqlPlGvagpllingkeylvPmAteEgslvAsasrgakainesgGvkttvlkd 93  
                   v+ Rrk+l+        + e+l+++++d ++v+++++EnviGy++lP+Gv gpl i+g  y++PmAt+Eg+lvAsa rg+kain++gG++t+++kd
   CCD24631.1  655 VAVRRKALSIladAPVLDSERLPYKNFDyDRVFGACCENVIGYMPLPVGVIGPLIIDGVPYHIPMATTEGCLVASAMRGCKAINSGGGATTVLTKD 750 
                   6678888866222444566779************************************************************************** PP

                   --EEEEEEEE.--S-HHHHHHHHHTHHHHHHHHHHCSHHCCT-EEEEEEEEE-SSEEEEEEEEE-TTC--HHHHHHHHHHHHHHHHHHHTS..EEE CS
  HMG-CoA_red   94 gmtraqvvllesvedaaelkkwiekkeeleelanaaestsrggglkdievvlagrlvvlrlkvdtgDAmGaNmvnkateaaaelieeefge..eel 187 
                   gmtr++vv+++++++  ++k w++++e  e++++a++stsr+++l++i+++lag+l+++r++++tgDAmG+Nm++k++e  ++ + eefg+  +e+
   CCD24631.1  751 GMTRGPVVRFPTLKRSGACKIWLDSEEGQEKIKKAFNSTSRFARLQHIQTALAGDLLFIRFRTTTGDAMGMNMISKGVEFSLNQMVEEFGWddMEI 846 
                   ****************************************************************************************99888*** PP

                   EEEE-S--GGGEEEEEEEEEHHHH..-SSTTHHHHHHHHHHHHHHHHHH-HHHH....HHHHHHH........HHHHHHHHHHTT--HHHHHHHHH CS
  HMG-CoA_red  188 lsilsNlctdkkasainaiegrgksvvaeatigeevvekilkasaealvdlnra.n.igtankGi.ggfnahaaNgiaAvflAtGqDlaaveessh 280 
                   +s+++N+c dkk++ain+iegrgks+vaeati+++vv+k+lk ++ alv+ln+a n ig+a++G+ ggfnahaaN ++AvflA GqD+a+++ess+
   CCD24631.1  847 VSVSGNYCVDKKPAAINWIEGRGKSIVAEATIPRDVVKKVLKSEVSALVELNIAkNlIGSAMAGSvGGFNAHAANLVTAVFLALGQDPAQNVESSN 942 
                   ************************************************************************************************ PP

                   HHTTSEEETTTEEEEEEEEE.----SBSHHHHH-HHHHHHHHTT---HH.........HHHHHHHHHHHHHHHHHHHHHT-----HHHHHHHH CS
  HMG-CoA_red  281 aiaaleevedgdlygsvtlPsleVGtvGGgtklppqaellkllgvkgak......nakeLaeiiaavgLAqelsalrALaaeglqkgHmklhr 367 
                   +i++++ev dgdl +sv++Ps+eVGt+GGgt l+pq ++l+llgv+g++      na++La+i+a+++LA+els+++ALaa++l+++Hm+++r
   CCD24631.1  943 CITLMKEV-DGDLRISVSMPSIEVGTIGGGTVLEPQGAMLDLLGVRGPHptspgeNARQLARIVACAVLAGELSLCSALAAGHLVQSHMTHNR 1034
                   ********.888*******************************************************************************97 PP

>> HPIH  N-terminal domain with HPIH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   1.0   7.6e-50   4.6e-46       1     155 [.      10     159 ..      10     160 .. 0.96

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 7.6e-50
        HPIH   1 kvtkllaslskfaakhPIhtIvvvallasttYlsvleeslfdwkldsksissagkvdvdsLlegsrhlrlgeetawkWqvldseeaaslsakdaqhlaL 99 
                 +v+k++a+l++f+a++PIh+I++++++++++Ylsv+++++++w+lds+si+s+++ d+++++++++h+ ++++++  W ++++  a+++ +   qh++L
  CCD24631.1  10 HVAKPFAYLARFSARNPIHVILTTLIISTAAYLSVIQYYFSGWQLDSNSIFSSNTRDQEQFFQECTHYVKEPSSR-AWGLVSNGVAKDTFT--RQHYYL 105
                 699************************************************************************.*******97766655..5***** PP

        HPIH 100 ltLvFpdsnstssataPelenvplpsnlsaylLpstpnllselssdsslafrlpyd 155
                 ++++F++ n++ +  +Pelen+ +++++++y+L+s+ +l++ l s++++++rl+++
  CCD24631.1 106 FDMNFQTDNHSIP--LPELENTYFQRGNEKYVLSSQLDLPTILESSDGTQWRLKAS 159
                 ********99898..**************************************975 PP

>> Sterol-sensing  Sterol-sensing domain of SREBP cleavage-activation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   8.9     9e-07    0.0054       4     139 ..     215     360 ..     213     371 .. 0.79
   2 ?   -2.6   0.9      0.72   4.3e+03     113     139 ..     490     516 ..     486     528 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9e-07
                     HHHHHHHHHHHHHHCCHHHHC.CHHHHHHHHHHHHH.HHHHHHHHHHHCHHCCHHCH....HHHHHHHTTTCH..HHHHHHHHHHHCCCCHHCCC CS
  Sterol-sensing   4 skfgLglagviivllsvassl.gllaylgltltlii.levlPflvlavgvdnifvlv....kavqrtsrslde..seriaealgevgpsilltsl 90 
                     s ++L+la +++ +++++ +l +   +++ ++++ + +e lPf+ +++g      +     + v+++  s++   ++ i  a ++vg  +++  +
      CCD24631.1 215 SNVWLSLATIFNSIFALFLALyTTECIIEAPVNIFSlVEGLPFIFVIIGFKYKVKMAayalNKVEKIGISKKMttDKIIFDAASHVGGRLMQDHF 309
                     7899************999863566788999988762578*********997776651111444444333333548888999************9 PP

                     HHHHHHH.HH.HHCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH CS
  Sterol-sensing  91 tellall.lg.altdvpavqeFclfaavavlvdFllqitfFvavLsldirr 139
                       ++a++  + +++++ a+++Fc+ + + +  + +l  tfF+a+Lsl+++ 
      CCD24631.1 310 LCVIAFVgCSiYASHLEALTNFCILCSFILSYELILTGTFFAAILSLKLEI 360
                     99999997552468899******************************9765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.72
                     HHHHHHHHHHHHHHTHHHHHHHHHHHH CS
  Sterol-sensing 113 faavavlvdFllqitfFvavLsldirr 139
                     +  va+   F+ +++fF+ ++s  i  
      CCD24631.1 490 YISVAIRDRFVSKMVFFALIFSATINI 516
                     667888889999999999999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.41
# Mc/sec: 7890.63
//
Query:       CCD24632.1  [L=989]
Description: hypothetical protein NDAI_0D03180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    0.00088   19.3   8.9     0.0017   18.4   8.9    1.4  1  Zn_clus         Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   8.9   9.7e-08    0.0017       2      39 ..      85     127 ..      84     128 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 9.7e-08
                 S-HHHHHCT---ST.......SSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus   2 aCdnCrkkKvKCda.......kkPaCsnCkklnleCtfysesskr 39 
                 aC +C++ K KC         ++P C +C + ++ C+ ++ s+++
  CCD24632.1  85 ACVRCHSLKQKCVPsdtndiyRRP-CERCLRTGKLCK-FDLSKRT 127
                 9***********87788999****.************.9988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 7169.28
//
Query:       CCD24633.1  [L=159]
Description: hypothetical protein NDAI_0D03190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-19   68.2   0.4    8.2e-19   67.9   0.4    1.1  1  Sybindin  Sybindin-like family
    0.00035   20.7   0.1    0.00046   20.3   0.1    1.2  1  Sedlin_N  Sedlin, N-terminal conserved region
     0.0032   16.8   1.0     0.0042   16.4   1.0    1.2  1  LptD      LPS transport system D


Domain annotation for each model (and alignments):
>> Sybindin  Sybindin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.4   1.4e-22   8.2e-19       1     121 [.       3     121 ..       3     139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 1.4e-22
    Sybindin   1 ifslyiinkaGgliyqkeaneekkea....rpklstneklllasmlhslkaiasklspvkakeelqgssgievletdtfkLhclqtltGiKfvlitdtk 95 
                 i+s +i++k+  +i+ +e++ +++++    ++k +++ ++ll++m++sl++i++kls    k        ++++ t ++++h + t +G+ fvl++d k
  CCD24633.1   3 IYSFWIFDKHCNCIFDREWTLTTNSTsgttNSKQNQETAKLLYGMIYSLRSITQKLSRGLNK------NEMRSISTGKYRVHTYCTASGLWFVLLSDFK 95 
                 899****************988776544436677778899******************3333......459999************************* PP

    Sybindin  96 tnaeadsllrkiyelYsdyvlknPfy 121
                 ++   ++l  +++ +Y+ yv  n f 
  CCD24633.1  96 QQSYSQVLEYIYSSIYVTYVANNLFS 121
                 ********************999764 PP

>> Sedlin_N  Sedlin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   7.7e-08   0.00046      20     123 ..      35     139 ..      13     144 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.7e-08
    Sedlin_N  20 keekelkeLnqfilhasLDivedlqwktnnlylgkvdkfeklsvsayvtnskikflllhesssskkkdekikqffqevhelyvk.tlmnP..Fykvnee 115
                 k+++e+ +L+  ++  sL  + ++ ++  n +     ++ k+ v  y+t+s++ f+ll +  +++  ++ ++ +++ ++ +yv   l +P  F + ++e
  CCD24633.1  35 KQNQETAKLLYGMI-YSLRSITQKLSRGLNKNEMRSISTGKYRVHTYCTASGLWFVLLSD-FKQQSYSQVLEYIYSSIYVTYVAnNLFSPydFAENEDE 131
                 23333444433333.37777777777755555444456799*******************.888999999************96257788334477788 PP

    Sedlin_N 116 irSpaFdk 123
                 +r + F+k
  CCD24633.1 132 MRGQGFRK 139
                 88888876 PP

>> LptD  LPS transport system D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   1.0     7e-07    0.0042     147     233 ..      39     129 ..      17     138 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 7e-07
                 EEEEEE.EEEEEEE-CCHHHHCCCCH---SEEEEEEEEEEEEEEE-EEEEECCT.......TCCEEEEEEEEEEEEEE----GCCS.-SS--B-- CS
        LptD 147 pelklr.qtaYdldtnlqskerakgldldssvnrslpdfsvdsglpferdttlf.......gksytqtlePraqylyvPyrdqnnlpnyDsssls 233
                 +++kl  ++ Y+l + +q+ +r    +l+++ +rs+++ + ++ +++  +  +f       ++sy+q+le +   +yv y+ +n +  yD+++++
  CCD24633.1  39 ETAKLLyGMIYSLRSITQKLSR----GLNKNEMRSISTGKYRVHTYCTASGLWFvllsdfkQQSYSQVLEYIYSSIYVTYVANNLFSPYDFAENE 129
                 4455553444777555553333....9**********************************9*********************999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1256.13
//
Query:       CCD24634.1  [L=435]
Description: hypothetical protein NDAI_0D03200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.1e-45  151.7   0.1    9.1e-45  151.7   0.1    1.8  2  ENTH         ENTH domain
    3.1e-05   23.1   0.0    4.6e-05   22.6   0.0    1.2  1  ANTH         ANTH domain
     0.0051   16.7   0.0     0.0088   15.9   0.0    1.3  1  VHS          VHS domain


Domain annotation for each model (and alignments):
>> ENTH  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   0.1   1.5e-48   9.1e-45       1     124 [.      29     152 ..      29     153 .. 0.98
   2 ?   -4.2   2.2       2.9   1.7e+04       2      22 ..     397     418 ..     396     420 .. 0.73

  Alignments for each domain:
  == domain 1  score: 151.7 bits;  conditional E-value: 1.5e-48
                 --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSHHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B-T CS
        ENTH   1 yseteskvreatnndpwGpsnkllteiarltyskkelseiisvitkrLqnnkgkewrsvlKaLtlieYLlknGseqvidwlkenisiiktlsefkyide 99 
                 y+e+eskvreatnn+pwG+s++l+++ia+ ty+ +e +ei+ +i++r++++ g+ewr+++KaL+l++YL+k+Gse +id++++++++i++l++f+yid+
  CCD24634.1  29 YTEMESKVREATNNEPWGASSTLMEQIAQGTYNVRERYEIVGMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSEPFIDDVRSSLKLIQMLETFHYIDS 127
                 799************************************************************************************************ PP

                 TS-B-HHHHHHHHHHHHHHHT-HHH CS
        ENTH 100 egkdeglniRkkakkiislledeer 124
                 eg+d+g+n+R++ak +++ll+d++ 
  CCD24634.1 128 EGRDQGINVRNRAKLLVELLQDDSN 152
                 **********************975 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 2.9
                 -HHHHHHHHHTSSSSS.S--HH CS
        ENTH   2 seteskvreatnndpw.Gpsnk 22 
                 s+t ++ ++at+n    G +n+
  CCD24634.1 397 SSTAANTNNATTNSTStGTTNS 418
                 7888899999888755477765 PP

>> ANTH  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   7.7e-09   4.6e-05       2     135 ..      32     164 ..      31     188 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 7.7e-09
                 HHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS...SHHHHHHHHHHHHHHHHHS-CHHHHHHHHTT-----TT---TSHHHST CS
        ANTH   2 levavvKAtshdevPpkekhvreilvltssrekvaalvwalsrrlklt..rnwvvalKaLilvHklLreGhpsveqellsarrrisellnlssfddsss 98 
                 +e  v+ At+ +   +   ++++i  +t + ++  ++v +++rr +++  ++w + +KaL l+  l+++G++ ++ ++ s+ + i+ l+ ++      s
  CCD24634.1  32 MESKVREATNNEPWGASSTLMEQIAQGTYNVRERYEIVGMIFRRFTEKagSEWRQIYKALQLLDYLIKHGSEPFIDDVRSSLKLIQMLETFHY-I--DS 127
                 5678999***********************777899********98873469****************************9998888888887.3..46 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHSS-...CCCS- CS
        ANTH  99 kswdysafiraYakyLderlefhrklkvdkgeleree 135
                 +++d++ ++r+ ak+L e l+  ++ ++++ ++++++
  CCD24634.1 128 EGRDQGINVRNRAKLLVELLQDDSNIRQERKKARETS 164
                 9***************998887777777643333333 PP

>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.5e-06    0.0088      20     136 ..      41     166 ..      29     170 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.5e-06
                 SS--HHHHHHHHHHHHCS...TCHHHHHHHHHHHHHT-...SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH.HHHHHHHHHHHCTTTCHCS...HHHH CS
         VHS  20 reedlslileicDlinek...eagpkeavrlikkkins...knphvallaLklldalvkNcGskfhleiask.eflnelvklilekknsklak..vkkk 109
                 ++e + +   + ++i +      +  e v +i ++  +   ++   ++ aL+lld+l+k++ ++f++ + s  ++++ l       ++++++   v+++
  CCD24634.1  41 NNEPWGASSTLMEQIAQGtynVRERYEIVGMIFRRFTEkagSEWRQIYKALQLLDYLIKHGSEPFIDDVRSSlKLIQMLETFHYIDSEGRDQGinVRNR 139
                 4455777777777777774432333345667778887745445566889********************665155555544333333333333569999 PP

                 HHHHHHHHHHHTTT-TTGHHHHHHHHH CS
         VHS 110 vlelleeWadafknkpelkkisdvykl 136
                 ++ l+e ++d+ + ++e kk +++ k+
  CCD24634.1 140 AKLLVELLQDDSNIRQERKKARETSKK 166
                 999999999998666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       846  (0.0471861); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3126.77
//
Query:       CCD24635.1  [L=179]
Description: hypothetical protein NDAI_0D03210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-50  169.4   0.2    7.7e-50  169.2   0.2    1.0  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.2   0.2   4.3e-54   7.7e-50       4     157 ..      26     175 ..      23     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 169.2 bits;  conditional E-value: 4.3e-54
  Pro_isomerase   4 ietsskGrivieLfadkaPktvenFlklvkeg...fYdgttFhRvikgfmvqgGdptgktsageqekkgge.siraipdEitsklkh.krGalama 94 
                    ++t+ kGri++eL++d +Pkt++nF  l+++    +Y +t FhR+i+gfm+qgGd ++   +g +    +  + +++pdE+ +  kh k+G+l+ma
     CCD24635.1  26 FKTN-KGRIEFELYDDIVPKTAKNFFTLCTRDtgaTYINTPFHRIIPGFMIQGGDTDHM--KGFGG---KSiYGNKFPDEN-FIKKHtKPGLLSMA 114
                    7997.************************987889********************5554..23322...2224479*****.5556779******* PP

  Pro_isomerase  95 rtgkepnsagsqFfItlkeaphldgkytvFGkVveGmdvvekiekvetdeerpkknvkivsae 157
                    ++g  pn++gsqFfIt+ ++p+ldgk++vFG+V++Gmdvv+kie++ ++   pk+++ i++a+
     CCD24635.1 115 NAG--PNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDVVKKIEACGSSTGTPKEEIIIEDAG 175
                    *98..8***************************************8777789***99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      194  (0.0108205); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1325.46
//
Query:       CCD24636.1  [L=217]
Description: hypothetical protein NDAI_0D03220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-43  148.9   0.0    1.2e-43  148.6   0.0    1.1  1  Cupin_5   Cupin superfamily (DUF985)


Domain annotation for each model (and alignments):
>> Cupin_5  Cupin superfamily (DUF985)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.6   0.0   6.9e-48   1.2e-43       2     140 ..      41     194 ..      40     195 .. 0.94

  Alignments for each domain:
  == domain 1  score: 148.6 bits;  conditional E-value: 6.9e-48
                 HHHHHTT-EEBTTSSEEEEEEE.SSEEE.CSS.............STC.....CES-EEEEEEEE.TTBEEEEEEESSEEEEEEEEES-EEEEEESTTS CS
     Cupin_5   2 eliaklnLephpegGyfretdrseltvpsskl............edgk....eRsasTaIyyllt.sgevsalhrvksdevwhyhaGrpLrlvllhadg 83 
                 eli++++L +h egGyf+etdrs+  ++++++            +  k    +R++sT Iyyllt +++++++h+++++ ++++++G++ ++vl+ ++g
  CCD24636.1  41 ELIDTWGLIKHGEGGYFKETDRSPFVMDAPTKitkkgsweeeetT--KlvllKRNYSTLIYYLLTpDSPIGKMHKNRNRIIHILQRGKG-QYVLIYPNG 136
                 89****************************999*****9987551..2445589***********************************.********* PP

                 CEEEEEESS-TTTTEBSEEEE-TTSEEEEEESSSST.SSEEEEEEEESSC--GGGEEE CS
     Cupin_5  84 rvetvvlGpdvaageklqlvVpagkwkaaellgdde.eeylLvsctvaPGFefedfel 140
                 +v+++ +G d+a+ge  q+vVp+g++ka++l++++e +++lL+s++v+PGF+fed+ +
  CCD24636.1 137 QVKSFRVGFDYANGEVSQWVVPGGVYKASFLVPNEEfHNGLLISEVVVPGFDFEDHLF 194
                 *********************************87799******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1660.04
//
Query:       CCD24637.1  [L=429]
Description: hypothetical protein NDAI_0D03230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-79  266.5   0.0    3.5e-79  266.1   0.0    1.1  1  Dus       Dihydrouridine synthase (Dus)


Domain annotation for each model (and alignments):
>> Dus  Dihydrouridine synthase (Dus)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.1   0.0     2e-83   3.5e-79       1     297 [.      19     319 ..      19     345 .. 0.83

  Alignments for each domain:
  == domain 1  score: 266.1 bits;  conditional E-value: 2e-83
                 EE---TTTS-HHHHHHHHHTT-SSEEEEEEEE-SSS---HHHHHHH-GGGGGT....SCEEEEEE-S-HHHHHHHHHHHHHTT-SCEEEEESSTTEEET CS
         Dus   1 llaPmagvtdlpfRelvrefgataLvvtemvtakaivreekvrirmlseeeee....tplavQlggsdpallaeaAklvadlgadeIdlNvGCPskkvt 95 
                 ++aPm+++++l++R l+r++gat L++t+m++ak ++++ek+r +m+se + +    +pl+vQ++++dp++l++aAkl ++ ++d++dlN+GCP+  + 
  CCD24637.1  19 IVAPMVDQSELAWRILSRRYGAT-LTYTPMLHAKLFATSEKYRKDMWSEYDGDadldRPLVVQFCANDPEYLLKAAKLIEN-KCDAVDLNLGCPQGIAR 115
                 58*********************.*************************99999999************************.***************** PP

                 TEEEGGGGGGSHHHHHHHHHHHHCCSSS-EEEEEESESSTTTC.HHHHHHHHHHCT-SEEEEESSECCCTT-C..G--CHHHHHHHHH-S..S-EEEES CS
         Dus  96 rggaGaaLlrkpdlvaqivkavvkaveiPvtvkirigiddeeenalelakiveaaGaqaltvHgRtraqnyeg..tadweaIkevkqavs..ipviaNG 190
                 +g++G++L++++dl+++++k++++++++Pvt+kir++ +   e++le+ak+v +aGaq+ltvHgR r+q+ ++   adwe Ik+++++++  ++++aNG
  CCD24637.1 116 KGHYGSFLMEEWDLIHKLIKTLHDNLNVPVTAKIRVFPE--REKTLEYAKMVLDAGAQFLTVHGRLREQKGQKtgLADWEIIKYLRDNLPsdTVFFANG 212
                 *************************************88..8889*************************999889*********************** PP

                 S--SHHHHHHHHHHH--SEEEESCHHCCSTTHHHH.HHHHHHSC------HHHHHHHHHHHHHHCHHTTCCCCCCHHHHH.HHHHHHHH.HTTTTCHHH CS
         Dus 191 dIkdaedaqaileetGadgvmigrgalgnPwlfae.stavktgeaepapplaeeaeiveehlkkleeelgedkglrkirk.hlawylkg.lkkaaelrr 286
                 ++ ++ed++++l +  +dgvm ++g+l+nP +f +  + +  +e ++a p   +++++ + + +++++++  ++ r ++k h +++l   l+++  +r 
  CCD24637.1 213 NVLYPEDISRCLTYMHCDGVMSAEGNLYNPGIFVNiPNDATCEELKKAFP---RVDKITREYFEIVKKYQGSQASRIAMKsHFFKILRPfLPNHVDIRT 308
                 *********************************86544444444444444...5555555555555555555555555542233333334444445555 PP

                 HHHHHHHHHCC CS
         Dus 287 eleevsdkeea 297
                 el+++++k++ 
  CCD24637.1 309 ELAKLNAKSSF 319
                 55554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3154.84
//
Query:       CCD24638.1  [L=1362]
Description: hypothetical protein NDAI_0D03240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-06   28.0  15.2     0.0001   22.6   3.5    2.9  2  zf-C2H2      Zinc finger, C2H2 type
    5.8e-06   26.5  11.5    4.1e-05   23.8   4.9    2.6  2  zf-H2C2_2    Zinc-finger double domain
  ------ inclusion threshold ------
      0.021   15.7  14.6       0.11   13.4   2.8    2.9  2  zf-C2H2_4    C2H2-type zinc finger
       0.13   12.4   0.6        1.1    9.5   0.1    2.6  2  DnaJ         DnaJ domain
       0.29   11.5   1.4        1.2    9.5   0.1    2.6  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   3.5   2.8e-08    0.0001       1      23 []      71      93 ..      71      93 .. 0.98
   2 !   10.3   4.0   0.00022      0.78       2      23 .]     100     122 ..      99     122 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.8e-08
                EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                ++C+ C++ F r+++LkrH+r+H
  CCD24638.1 71 FVCSTCTRGFVRQEHLKRHQRSH 93
                89********************9 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00022
                 EETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                  C  Cg++F r+++  rH+ + H
  CCD24638.1 100 LCVFCGRCFARRDLVLRHQHKlH 122
                 599****************9988 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.5     0.004        14      10      25 ..      66      81 ..      58      82 .. 0.81
   2 !   23.8   4.9   1.1e-08   4.1e-05       1      25 [.      85     109 ..      85     110 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.004
   zf-H2C2_2 10 tgekpyeCplCdkaFk 25
                 +++p+ C+ C   F+
  CCD24638.1 66 NKPRPFVCSTCTRGFV 81
                4789********9997 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.1e-08
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 +L+rH+r+Ht+ekp+ C +C+  F+
  CCD24638.1  85 HLKRHQRSHTNEKPFLCVFCGRCFA 109
                 79********************997 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.8   3.1e-05      0.11       1      23 [.      71      93 ..      71      94 .. 0.96
   2 ?    7.0   4.1    0.0034        12       1      24 []      99     122 ..      99     122 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.1e-05
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlkth 23
                f C+ C++ F ++++L+rH ++h
  CCD24638.1 71 FVCSTCTRGFVRQEHLKRHQRSH 93
                89********************9 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0034
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkthH 24 
                 f C +Cg+ F +++ +lrH  + H
  CCD24638.1  99 FLCVFCGRCFARRDLVLRHQHKLH 122
                 78*************999988877 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00029       1.1      14      34 ..     195     215 ..     186     223 .. 0.70
   2 ?   -0.8   0.1      0.48   1.7e+03      24      40 ..     662     678 ..     660     690 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00029
                 HHHHHHHHHHHHHHHSTTTSC CS
        DnaJ  14 edeIkkaYrklalkyHPDknp 34 
                 e+  k +Yr+ + ++HPD  +
  CCD24638.1 195 EARNKHEYRRTSNEWHPDVTS 215
                 3446899***********774 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.48
                 HHHHHSTTTSCCHHHHH CS
        DnaJ  24 lalkyHPDknpkdpeae 40 
                 la++ HP  n++++ a+
  CCD24638.1 662 LAVNTHPNLNTQNNHAS 678
                 8999****997777554 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00033       1.2       2      24 ..      71      93 ..      70      93 .. 0.95
   2 ?   -1.0   0.1      0.64   2.3e+03      16      24 ..     570     578 ..     570     578 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00033
                 CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnHlkSK 24
                 f C +C + F  ++ l+ H++S+
   CCD24638.1 71 FVCSTCTRGFVRQEHLKRHQRSH 93
                 88*******************97 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.64
                  HHHCCTTSH CS
  zf-C2H2_jaz  16 aldnHlkSK 24 
                  ++++Hl++K
   CCD24638.1 570 DYQQHLSTK 578
                  59*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1006  (0.0561102); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.44
# Mc/sec: 9213.92
//
Query:       CCD24639.1  [L=65]
Description: hypothetical protein NDAI_0D03250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-28   97.4   0.3    2.8e-28   97.2   0.3    1.0  1  ATP-synt_J  ATP synthase j chain


Domain annotation for each model (and alignments):
>> ATP-synt_J  ATP synthase j chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.3   1.6e-32   2.8e-28       1      51 []       4      54 ..       4      54 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 1.6e-32
                -----SSSSSHHHHHHHHHHHHHHHHHHHHSTTSSSSSS-TTSTTTTSS-- CS
  ATP-synt_J  1 kfptpvlkpmwPFfaaglivlygvnkaqnammnsdEfknDPRNPraakgkk 51
                +fptpvlk+ wPFf+ag+i+++gv+k+++a+ nsdE++nDPRNPr+akg+k
  CCD24639.1  4 RFPTPVLKQNWPFFVAGAITYWGVSKITTASENSDEWINDPRNPRFAKGGK 54
                8***********************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 520.68
//
Query:       CCD24640.1  [L=696]
Description: hypothetical protein NDAI_0D03260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-21   76.2   0.0    1.5e-11   43.4   0.1    2.8  3  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.021   3.8e+02      69      89 ..     330     350 ..     325     358 .. 0.80
   2 !   43.4   0.1   8.5e-16   1.5e-11     123     218 ..     418     514 ..     396     527 .. 0.82
   3 !   28.9   0.0   2.3e-11   4.1e-07     274     381 ..     582     690 ..     567     691 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.021
                      EEEEESSHHHHHHHHHHTTS- CS
  Cys_Met_Meta_PP  69 aalavssGmaAiaaailallk 89 
                       +++++sGmaA+++a + ll+
       CCD24640.1 330 DVYLFTSGMAALFTAHRLLLH 350
                      5789********888776665 PP

  == domain 2  score: 43.4 bits;  conditional E-value: 8.5e-16
                      STTSHHHHHHHCCT..TEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTTS-GGGGT-SEEEEETTTTTTCSSS--EEEEEES CS
  Cys_Met_Meta_PP 123 dtsdleelekaike..ntklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspllqrplklgaDivvhSaTKylgGhsdvvaGvivvk 214
                      + s +++l++ +++  +  +v++E+p+npllk+ D+ ++ +l    g  ++vD t+a  +++ ++ + aDi++ S TK   G s+v+aG +v +
       CCD24640.1 418 ENSAMSKLKEILHSgeQILAVFIEAPSNPLLKMGDLIELKRLSDMYGFFIIVDETIAGFVNIDAIIH-ADIICSSLTKVFTGDSNVIAGSMVLN 510
                      44556667766665548889********************************************976.9********************99987 PP

                      SCHH CS
  Cys_Met_Meta_PP 215 gkee 218
                         +
       CCD24640.1 511 PMSK 514
                      6555 PP

  == domain 3  score: 28.9 bits;  conditional E-value: 2.3e-11
                      EEEE-TTSTTSTT...HHHHH.HHSSSG-SEEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEE CS
  Cys_Met_Meta_PP 274 ekvyYpglpshpq...helak.kqlkgaggvlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRl 363
                      +k+yYp   s++    ++  k k   g+ggv+s + ++  ekak f +nlkl   + slG+  + +  p++   +  + e+  ++g+ ++liR+
       CCD24640.1 582 KKIYYPTTTSKETkmcYDAIKcKTYGGYGGVFSITFHDI-EKAKLFFNNLKLS-KTISLGSNYTTVC-PYTVLKHGDELEKVSEYGLDETLIRV 672
                      789999988776533366555255566778*****9988.89*********96.578****999885.5555555557788899********** PP

                      E--SS-HHHHHHHHHHHH CS
  Cys_Met_Meta_PP 364 svGiEdvdDliaDlkqal 381
                      +vG+E+   l++ +++a+
       CCD24640.1 673 CVGLENKTSLKENFSRAI 690
                      **************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 5101.79
//
Query:       CCD24641.1  [L=521]
Description: hypothetical protein NDAI_0D03270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-27   94.6   0.0    2.4e-26   92.1   0.0    2.3  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
    1.4e-19   70.4   0.1    2.4e-19   69.6   0.1    1.3  1  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    1.4e-14   54.2   0.0    2.9e-14   53.1   0.0    1.6  1  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b


Domain annotation for each model (and alignments):
>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   4.1e-30   2.4e-26       3     122 ..     161     280 ..     159     290 .. 0.90
   2 ?   -1.9   0.0      0.44   2.6e+03       4      23 ..     386     405 ..     384     412 .. 0.85

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 4.1e-30
                   HHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTTT CS
  TPP_enzyme_M   3 kaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgsep 98 
                    ++el+k +k+p+ilv+  ++r+++++e ++l+e +++P + t+mgkg+i+e+hp+y g ++g ++++++++a+e+aDl+l +Ga ++d++t gs++
    CCD24641.1 161 MILELIKDSKNPAILVDACASRHDVKAETNKLIELTQFPHFVTPMGKGAINEQHPRYGGvYVGTLSKPEVKKAVESADLILSVGALLSDFNT-GSFS 256
                   689**************************************************************************************655.5555 PP

                   .TTTTT-EEEEEESSCCCCTTCC-- CS
  TPP_enzyme_M  99 .efapeakiihididpaeigknyqv 122
                     ++  ++i+++++d  +i ++  +
    CCD24641.1 257 ySYK-TKNIVEFHSDYIKIRNATFP 280
                   3544.448********999987655 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.44
                   HHHHHHH-SSEEEEE-CHHC CS
  TPP_enzyme_M   4 aaellkaakrpvilvGggva 23 
                   aae l  +kr++++ G g  
    CCD24641.1 386 AAEELDPHKRVILFTGDGSL 405
                   7899999*********9965 PP

>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.1     4e-23   2.4e-19      41     169 ..       2     135 ..       1     137 [. 0.89

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 4e-23
                   EEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE--CCCHH.....S..TC--T..-CCHHHCCCSSEEEE- CS
  TPP_enzyme_N  41 rvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsgdrptslrg.....qgvlqqel..dqlalfrpvtkyaerv 130
                   r+    +E +aa+aAdgyar++g + ++++t g+G ++al+++a+ + +++ +l+++g ++t+++      +++l +        +  ++ + +  +
    CCD24641.1   2 RWAGNANELNAAYAADGYARVKG-MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGTPSTTSQAknlllHHTLGNGDftVFHRMSSNLSETTAMI 97 
                   667789***************97.99999999**********************************88888666664445545666779******** PP

                   SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N 131 tspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                   t+++++p +++r+irt  +  ++Pvyl +p++ ++ +v+
    CCD24641.1  98 TDVTTAPAEIDRCIRTT-YIAQRPVYLGIPANYFDLKVP 135
                   *****************.99999*********9988776 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   4.9e-18   2.9e-14      24     128 ..     367     471 ..     350     496 .. 0.79

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 4.9e-18
                   ETTTS-TTTHHHHHHHHHHH....STTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTCCTTTTSBB.BS----HHHH CS
  TPP_enzyme_C  24 sgglgtmGyglpaAiGakla....kpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfggkrksgpagkdlkpvdfakl 116
                   + ++g++Gy+ +  +Ga +a    +p+++v+ ++GDG+++ ++qe++t++r nl   +++lnN+gy   +  + p+ + ++        ++ d+ kl
    CCD24641.1 367 QVLWGSIGYATGCTLGATMAaeelDPHKRVILFTGDGSLQLTVQEISTMIRWNLRPYLFILNNNGYTIEKLIHGPTAQYNE-------IQSWDHLKL 456
                   55899**************54555889***************************************999988666665332.......6688***** PP

                   HHHTTSE.EE..EES CS
  TPP_enzyme_C 117 aealGak.ga..rve 128
                    e +Gak     rv 
    CCD24641.1 457 LETFGAKdYEnhRVA 471
                   ******944455443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4019.69
//
Query:       CCD24642.1  [L=135]
Description: hypothetical protein NDAI_0D03280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-23   82.4   0.5    3.4e-16   59.8   0.0    2.1  2  Ctf8      Ctf8


Domain annotation for each model (and alignments):
>> Ctf8  Ctf8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   1.9e-20   3.4e-16       2      99 ..      27     113 ..      26     115 .. 0.91
   2 !   23.6   0.1   2.8e-09   5.1e-05     118     142 .]     110     134 ..     108     134 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 1.9e-20
        Ctf8   2 lqtpsglalLElQGtinlpekekeeaeeesvsdeakaqetveevkiGrldfpdyspeaedtkwmkrvyLyvgkhQrLtGevkkLakplavlrrrksek 99 
                 + tp g ++LE+QG++++p++ +++a +++   ++ ++ + + v++G l++         ++++k ++L++g++QrL G++ kL++pl++l+  +s+k
  CCD24642.1  27 IPTPLGHTMLEIQGDLEMPKTVPTDAPDSR--YSKYNDGEIDIVRFGLLNL---------DQEKKLATLFIGTKQRLLGKIVKLDTPLGLLKFDNSSK 113
                 77*************************998..56667778899********.........78899***************************997765 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 2.8e-09
        Ctf8 118 eseeeleivdivkykiifssrPePv 142
                 +s++++++vd+++ykiifs rP+P+
  CCD24642.1 110 NSSKKVQLVDVINYKIIFSDRPLPI 134
                 6789********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       213  (0.0118802); expected 358.6 (0.02)
Passed bias filter:                      200  (0.0111551); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1038.63
//
Query:       CCD24643.1  [L=301]
Description: hypothetical protein NDAI_0D03290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-14   53.2   1.2    4.3e-14   52.0   1.2    1.7  1  zinc_ribbon_10   Predicted integral membrane zinc-ribbon meta
     0.0003   20.8   0.2    0.00053   20.0   0.2    1.4  1  DUF4271          Domain of unknown function (DUF4271)
     0.0009   19.5   0.5     0.0009   19.5   0.5    2.8  3  End3             Actin cytoskeleton-regulatory complex protei
  ------ inclusion threshold ------
      0.032   13.8   0.0      0.044   13.3   0.0    1.1  1  LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
      0.035   14.3   0.3      0.055   13.6   0.3    1.3  1  DUF3792          Protein of unknown function (DUF3792)
      0.054   13.1   0.6       0.11   12.2   0.6    1.6  1  Wzy_C            O-Antigen ligase
      0.077   12.5   4.2       0.22   11.1   4.2    1.9  1  TF_Zn_Ribbon     TFIIB zinc-binding
       0.16   12.7   0.0       0.29   11.9   0.0    1.3  1  PrgI             PrgI family protein
       0.25   10.8   5.3          4    6.9   0.4    2.3  2  Allexi_40kDa     Allexivirus 40kDa protein
       0.43   10.7  12.0        0.3   11.2   6.9    2.9  2  Cep57_CLD_2      Centrosome localisation domain of PPC89
        1.1    9.2   5.7        2.2    8.3   1.0    2.2  2  DUF489           Protein of unknown function (DUF489)
        1.3    9.5   3.9         12    6.5   0.1    2.6  2  DUF4140          N-terminal domain of unknown function (DUF41
        2.1    9.1   7.4        3.9    8.2   0.4    2.3  2  DNA_repr_REX1B   DNA repair REX1-B
        2.8    7.7   6.4        4.6    7.0   0.0    3.1  4  USP8_interact    USP8 interacting
        5.1    7.4   8.2         18    5.6   8.2    2.2  1  CTU2             Cytoplasmic tRNA 2-thiolation protein 2
        9.8    5.6  11.0         84    2.6  11.1    2.0  1  Exonuc_VII_L     Exonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   1.2   3.8e-17   4.3e-14       1      52 [.     206     255 ..     206     257 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 3.8e-17
  zinc_ribbon_10   1 wfDrvldvLvGddetsaknryalICskChshnGlapkeeleevkyrCpkCga 52 
                     wfD+v+++L+G+++ + +++ +++Cs+C+ h G + +  +++++y+Cp Cg 
      CCD24643.1 206 WFDKVIGILAGGND-LNNTIRPIVCSNCKRHTGAY-RLLNKPLQYVCPVCGC 255
                     9*************.99******************.**************96 PP

>> DUF4271  Domain of unknown function (DUF4271)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.2   4.8e-07   0.00053      47     113 ..      55     118 ..      15     128 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 4.8e-07
     DUF4271  47 esrfqlflllltclllglllylllsefgslfgsylassllllliiflilllylllKlllykllgwlF 113
                 +    +f+ l  +++l+ + y+++s++  ++g+   +++  + +++l+++l+ +lK++ ykl gw  
  CCD24643.1  55 FQSQLTFYGLSAIVCLASAAYYYSSSYSENEGN---TEWVWITVLVLGVILLGFLKWVSYKLEGWYK 118
                 444456888888899999999999999999998...**************************99965 PP

>> End3  Actin cytoskeleton-regulatory complex protein END3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.5     8e-07    0.0009     152     198 ..       9      55 ..       2      56 .. 0.89
   2 ?    3.4   4.4     0.065        73      48     121 ..     124     202 ..     107     209 .. 0.67
   3 ?   -2.1   1.0       3.2   3.6e+03      57      63 ..     282     288 ..     257     300 .. 0.44

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8e-07
        End3 152 lreleegegkskeknlksvkedietveeqVegLesylssrkeeLeqL 198
                 l++++++ ++sk++ +++ +ed++ + +q++ Les l++r+++L++ 
  CCD24643.1   9 LSKVNNTITNSKKTLIQRYTEDLSHITSQIHALESSLQRRQAVLDHF 55 
                 667778888888899*****************************875 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.065
        End3  48 ssasktaaksksetstgkkakf..gdsylsrlGvgsks.ekgtdfsatk.gtdwe.evrLkreLaeLeeklekveeeae 121
                 + ++ +a++sk+ +s +++ +f   +s ++r   gs++ + ++ + +++  ++++  ++Lk eL++L++  e v+++++
  CCD24643.1 124 KLSKLRATHSKKLESLKRETQFheTNSIIQRFSSGSNQdDDAMVLMDEQlSAKYDeFNQLKNELNKLQKDNEFVNNKEK 202
                 44444455555555556666662246789***99999656666666666677766379**********99999988766 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 3.2
        End3  57 sksetst 63 
                 ++s+++t
  CCD24643.1 282 NDSNKKT 288
                 1111111 PP

>> LPG_synthase_TM  Lysylphosphatidylglycerol synthase TM region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.9e-05     0.044     118     197 ..      61     144 ..      53     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.9e-05
  LPG_synthase_TM 118 lldllalvllgllallllggllaegaa....vllllalallllavlalllllllrrrlarlarvlkrlarllarfarklasakr 197
                      +++l a+v+l  +a+++ +++++++++    ++++l+l+++ll++l ++ + l  +++ r  + l++l++  ++  ++l+++++
       CCD24643.1  61 FYGLSAIVCLASAAYYYSSSYSENEGNtewvWITVLVLGVILLGFLKWVSYKLEGWYKERQDKKLSKLRATHSKKLESLKRETQ 144
                      456777788888888888888777777***********************************9999999987766666555544 PP

>> DUF3792  Protein of unknown function (DUF3792)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   4.9e-05     0.055       7      65 ..      56     116 ..      51     118 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.9e-05
     DUF3792   7 kgllialvitlilllilalllyftsls..ekvlsililiililsvfigGflagkkakkkgl 65 
                  + l+ + +++i++l+ a+ +y +s s  e + +++ + +l+l+v++ Gfl   + k  g+
  CCD24643.1  56 QSQLTFYGLSAIVCLASAAYYYSSSYSenEGNTEWVWITVLVLGVILLGFLKWVSYKLEGW 116
                 56688999***************999977889******************98777777777 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.6   9.6e-05      0.11      21      80 ..      63     144 ..      55     206 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 9.6e-05
       Wzy_C  21 gllvalivlliifykrri........pfllllgilvgvilliilfvlstnletlknitkafgkldkk...............k 80 
                 gl ++++++ +++y             ++++ ++++gvill  l ++s +le+++++ + ++kl+k                +
  CCD24643.1  63 GLSAIVCLASAAYYYSSSysenegntEWVWITVLVLGVILLGFLKWVSYKLEGWYKERQ-DKKLSKLrathskkleslkretQ 144
                 553444444444444444477777878888888**********************9754.45555546654444444444431 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   4.2    0.0002      0.22       2      42 ..     228     269 ..     227     270 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0002
                   EETTTTCEE.C..HEETSTTCEEESSSSBEEEECCCCCCCHHHH CS
  TF_Zn_Ribbon   2 kCPnCgstn.l..veDpergelvCtdCGlVlednsidegpewre 42 
                   +C nC+  +    ++ ++   +vC+ CG+ l+ + i++  e+re
    CCD24643.1 228 VCSNCKRHTgAyrLL-NKPLQYVCPVCGCKLD-ETIKNQHEERE 269
                   788888766323344.46689**********7.55888888876 PP

>> PrgI  PrgI family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00025      0.29      21      78 ..      58     120 ..      57     131 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00025
        PrgI  21 Qliflvlallv..aiglylllrafl...eelasvlvillavPvaalgfykkdglplekylkai 78 
                 Ql f++l ++v  a ++y++ +++     ++  v +++l++ v++lgf k   ++le ++k  
  CCD24643.1  58 QLTFYGLSAIVclASAAYYYSSSYSeneGNTEWVWITVLVLGVILLGFLKWVSYKLEGWYKER 120
                 777777777753366677777777798444555555566999***************999865 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.5    0.0066       7.4      62     113 ..       6      57 ..       1      69 [. 0.62
   2 ?    6.9   0.4    0.0035         4      41     110 ..     126     203 ..     120     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0066
  Allexi_40kDa  62 dsiinklnpvsllsqttlLselrdalrtltklldklksvekklelsaetasd 113
                     i++k+n++ + s++tl+++  ++l ++t++++ l+s  ++ ++  ++ ++
    CCD24643.1   6 STILSKVNNTITNSKKTLIQRYTEDLSHITSQIHALESSLQRRQAVLDHFQS 57 
                   4566666666666666666666666666666666666666665555554443 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0035
  Allexi_40kDa  41 GqLhaLhqnsLeWLthis..hdvdsiinklnpvslls......qttlLselrdalrtltklldklksvekklelsaet 110
                    +L a h   Le L   +  h+++sii+++ + s         +  +Ls   d+ ++l+++l+kl+++++ +++++++
    CCD24643.1 126 SKLRATHSKKLESLKRETqfHETNSIIQRFSSGSNQDddamvlMDEQLSAKYDEFNQLKNELNKLQKDNEFVNNKEKS 203
                   578999999999997643349*********988766666777788889999999999999999999888887777665 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2       1.7   1.9e+03       9      27 ..      28      46 ..      19      54 .. 0.76
   2 ?   11.2   6.9   0.00027       0.3      38      62 ..     171     195 ..     123     204 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.7
  Cep57_CLD_2  9 qnrLdsltrklqvheeelk 27
                  ++L+++t+++ + e+ l+
   CCD24643.1 28 TEDLSHITSQIHALESSLQ 46
                 6889999999998887665 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00027
  Cep57_CLD_2  38 rqLgvAyeelneLkaevealrkELk 62 
                   qL+ +y+e n+Lk+e++ l+k+++
   CCD24643.1 171 EQLSAKYDEFNQLKNELNKLQKDNE 195
                  69*********************54 PP

>> DUF489  Protein of unknown function (DUF489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.0    0.0019       2.2      61     136 ..       7      83 ..       2      87 .. 0.83
   2 ?    3.1   0.3     0.075        84      84     116 ..     166     198 ..     123     210 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0019
                 HHHHHHHT--S.CHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHTTHHHHTTS-TTSHHHHHHHHHHHHHHTGG CS
      DUF489  61 tlleqlekekk.kkdaeltryalsllalerkLsknkealaklgerieqierqlehfdllhenvlanlasiYsdtiSk 136
                 t+l+ ++++ + +k++ + ry+  l +++++++  ++ l++ +  +++ ++ql+ ++l+    la+ a  Ys+  S+
  CCD24643.1   7 TILSKVNNTITnSKKTLIQRYTEDLSHITSQIHALESSLQRRQAVLDHFQSQLTFYGLSAIVCLASAAYYYSSSYSE 83 
                 4444555544425667889***************************************9999999999999988876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.075
                 HHHHHHHHHHSTTHHHHHHHHHHTTHHHHTTS- CS
      DUF489  84 llalerkLsknkealaklgerieqierqlehfd 116
                 ++ + ++Ls + + +++l+++++++++  e  +
  CCD24643.1 166 MVLMDEQLSAKYDEFNQLKNELNKLQKDNEFVN 198
                 6778899*******************9988654 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1      0.01        12      64      97 ..      28      61 ..       7      62 .. 0.78
   2 ?    3.1   1.2      0.12   1.3e+02      65      91 ..     164     197 ..     118     203 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.01
     DUF4140 64 eeelkalraeleeledelaaledelaaaearlaf 97
                +e+l+++++++++le  l++ ++ l+  +++l f
  CCD24643.1 28 TEDLSHITSQIHALESSLQRRQAVLDHFQSQLTF 61
                2249***********************9999987 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.12
     DUF4140  65 e.......elkalraeleeledelaaledelaaa 91 
                 +       +l+a  +e ++l+ el++l+++ + +
  CCD24643.1 164 DamvlmdeQLSAKYDEFNQLKNELNKLQKDNEFV 197
                 2444444335555555555555555555555544 PP

>> DNA_repr_REX1B  DNA repair REX1-B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.4    0.0035       3.9      36      64 ..      20      48 ..       4      58 .. 0.82
   2 ?    3.8   1.7     0.084        95      18      80 ..     126     193 ..     117     197 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0035
  DNA_repr_REX1B 36 ykqlvkevTeefseiSkevleieaaLree 64
                     k+l+++ Te++s+i +++ ++e++L+++
      CCD24643.1 20 KKTLIQRYTEDLSHITSQIHALESSLQRR 48
                    47899*********************986 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.084
  DNA_repr_REX1B  18 kefeegfkaylksgaeeeykqlvkevTeefseiSke....vleieaaLreea.sredlaelirkvqek 80 
                     ++++  +++ l+s + e+  + ++++ ++fs+ S++    ++ + ++L+ +  + ++l++ ++k+q++
      CCD24643.1 126 SKLRATHSKKLESLKRETQFHETNSIIQRFSSGSNQdddaMVLMDEQLSAKYdEFNQLKNELNKLQKD 193
                     688999999999877777555678999*******9999998899999999987889999999999985 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.22   2.5e+02      32      63 ..      19      51 ..       2      66 .. 0.61
   2 ?   -0.4   1.1      0.77   8.6e+02      12      58 ..     124     173 ..     118     195 .. 0.43
   3 ?   -0.2   0.2       0.7   7.8e+02      15      52 ..     161     198 ..     147     209 .. 0.64
   4 ?    7.0   0.0    0.0041       4.6     106     137 ..     256     287 ..     241     297 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.22
  USP8_interact 32 relellkeyiralrstnpvlraladqler.dev 63
                    + +l+++y   l +++++++al+++l+r ++v
     CCD24643.1 19 SKKTLIQRYTEDLSHITSQIHALESSLQRrQAV 51
                   334567777777777777777777777553333 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.77
  USP8_interact  12 kiaelkkevaeqkqqlseqkrelellkeyiralrstn......pvlraladql 58 
                    k+++l+   a+++++l++ kre ++ ++    +r ++       ++  + +ql
     CCD24643.1 124 KLSKLR---ATHSKKLESLKRETQFHETNSIIQRFSSgsnqddDAMVLMDEQL 173
                    444444...44444455555554444433333333332222224444444444 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.7
  USP8_interact  15 elkkevaeqkqqlseqkrelellkeyiralrstnpvlr 52 
                    + ++++  + +qls + +e ++lk+ ++ l++ n+ ++
     CCD24643.1 161 QDDDAMVLMDEQLSAKYDEFNQLKNELNKLQKDNEFVN 198
                    44555556666777777777777777777766666554 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0041
  USP8_interact 106 llnelvenaherrWPeglstLetRqlnrrrye 137
                     l+e ++n he+r P+++ t++t+ +n ++ +
     CCD24643.1 256 KLDETIKNQHEEREPSAVDTIDTKDTNDSNKK 287
                    47899*******************99987655 PP

>> CTU2  Cytoplasmic tRNA 2-thiolation protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   8.2     0.016        18      43      93 ..     245     295 ..     116     301 .] 0.72

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.016
        CTU2  43 etsekCalCglplddkakewkrtitiselseteseeekeelekakeeeeee 93 
                   +  C++Cg++ld++ k++ ++ + s ++   +++++++++k+k++++++
  CCD24643.1 245 PLQYVCPVCGCKLDETIKNQHEEREPSAVDTIDTKDTNDSNKKTKKSKKKN 295
                 55788********99888887777777777666666544444443333332 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  11.1     0.075        84     148     261 ..       8     192 ..       2     205 .. 0.65

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.075
  Exonuc_VII_L 148 qleelerrlekaikrlleekkqrleklasrlkspeellerkrqrldeleerler........................................... 201
                    l+++++ ++++ k+l+++  + l++++s+++  e+ l+r++  ld+++++l+                                            
    CCD24643.1   8 ILSKVNNTITNSKKTLIQRYTEDLSHITSQIHALESSLQRRQAVLDHFQSQLTFyglsaivclasaayyysssysenegntewvwitvlvlgvillg 104
                   5677778888888888888888899998888888889999999999988888888888888888888888888888888888888888888888888 PP

  Exonuc_VII_L 202 ...................alkkqlkkkrerleelkerlk.ekleekkerlkklkerle...............lleekkerleeleeklealsp 261
                                      +l+k  ++++++le+lk++++ +++++  +r+       +               +l++k +++++l+++l++l+ 
    CCD24643.1 105 flkwvsyklegwykerqdkKLSKLRATHSKKLESLKRETQfHETNSIIQRF-------SsgsnqdddamvlmdeQLSAKYDEFNQLKNELNKLQK 192
                   887777766666655444333333444444444444333222222222222.......1222233344455556677777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2564  (0.143009); expected 358.6 (0.02)
Passed bias filter:                      894  (0.0498633); expected 358.6 (0.02)
Passed Vit filter:                       159  (0.00886831); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 2217.51
//
Query:       CCD24644.1  [L=174]
Description: hypothetical protein NDAI_0D03300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-16   59.8   0.8      1e-15   57.4   0.2    2.1  2  NAC       NAC domain
  ------ inclusion threshold ------
      0.021   14.6   0.6      0.045   13.6   0.0    1.9  2  UBA_4     UBA-like domain


Domain annotation for each model (and alignments):
>> NAC  NAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   0.2   1.1e-19     1e-15       1      56 [.      16      70 ..      16      71 .. 0.98
   2 ?    0.4   0.0     0.072   6.4e+02      26      43 ..     137     153 ..     135     158 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 1.1e-19
         NAC  1 ekKlrkalkklglkeipgieeVtirksdgkvlvfdnPkVqkspgsntyvvfGeaee 56
                ekK+r+ + klgl+ +pgi +V +rk++++++ +++P+V++s g n yvvfGea++
  CCD24644.1 16 EKKARELIGKLGLRLVPGIIRVAFRKKNNEIVAIEKPEVYRSVGGN-YVVFGEAKV 70
                8*********************************************.*******96 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.072
         NAC  26 ksdgkvlvfdnPkVqksp 43 
                 k+d   lv+++  V+k +
  CCD24644.1 137 KED-IDLVIQQTNVTKNK 153
                 677.99********9654 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2      0.72   6.5e+03      10      18 ..     112     121 ..     110     122 .. 0.59
   2 ?   13.6   0.0     5e-06     0.045      11      33 ..     147     169 ..     137     171 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.72
       UBA_4  10 iTGa.deekA 18 
                  TGa de+ A
  CCD24644.1 112 ATGAlDEAIA 121
                 5776566555 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 5e-06
       UBA_4  11 TGadeekArqlLeannWdLerAi 33 
                 T+++ +kA++ L+ +n+d+ +Ai
  CCD24644.1 147 TNVTKNKAIKALKEHNGDIVNAI 169
                 99999*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1288.89
//
Query:       CCD24645.1  [L=620]
Description: hypothetical protein NDAI_0D03310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.5e-215  716.9   6.6   2.2e-215  716.3   6.6    1.2  1  MDM31_MDM32  Yeast mitochondrial distribution and morphology 


Domain annotation for each model (and alignments):
>> MDM31_MDM32  Yeast mitochondrial distribution and morphology (MDM) proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  716.3   6.6  1.2e-219  2.2e-215       1     525 []      96     616 ..      96     616 .. 0.94

  Alignments for each domain:
  == domain 1  score: 716.3 bits;  conditional E-value: 1.2e-219
  MDM31_MDM32   1 keelLaaangflsrlkirlkwllirsvrpfnaddisafvswlllgnvlwillgtTtfvslvillintvfaqetlakkigdyltkst.gvkvvFEsaiv 97 
                  k++ L++a++++++lki+++w+l++s++pfnaddisa++sw+l++nv++++l+tTtfvsl+i+l+n++++q++l k ig+++t++t +++v+FE+aiv
   CCD24645.1  96 KNRRLSQATNIFQKLKINIRWILKKSYKPFNADDISAVISWVLVSNVIIFILWTTTFVSLIIYLLNSISLQDYLVKSIGNLITRGTpNLSVIFEDAIV 193
                  7889********************************************************************************9989********** PP

  MDM31_MDM32  98 pkwkdgkisfknvfvsrrPkqkkskvekgsskeaaakaaaaaaaeekese...eeeeeeeddgnytqfdltidtvdvtLsfakwlngkGllkdvevkG 192
                  p+w++gki fknvfvsrrPk   + ++kgs+++a+++a+ a ++++       ++++++e+d nytqfdltid+v+++L+f+kwlngkG+l++v+++G
   CCD24645.1 194 PDWSSGKIIFKNVFVSRRPK-LLKGFQKGSQEDAVQRANLALTEKNLLFLspeSSSSANENDWNYTQFDLTIDKVEISLNFTKWLNGKGCLDEVSING 290
                  ********************.789************999998775443335666777889************************************** PP

  MDM31_MDM32 193 vrGvvdrthvkwkeeeldpksyrhehqpgdfelesfkledvlvtvyqpegfrpfkvsifscdlpqLRkqwlfyDflsAnnvsGsfdnslFtiHkrqsl 290
                  +rG+vdrth++wk+ ++dp+++r+++q gdfe+++f+++d l+t+yqp+gfrpf+vsif+cdlpqLRk+wlfyD+l+A+nvsG++dns+FtiH+  ++
   CCD24645.1 291 LRGIVDRTHIRWKD-NDDPRDFRNVYQLGDFEISKFSMNDGLFTLYQPNGFRPFQVSIFNCDLPQLRKHWLFYDILKATNVSGTYDNSMFTIHRTLQN 387
                  **************.7******************************************************************************9995 PP

  MDM31_MDM32 291 ekeeeekeeea...........skwkklsrlridglnidhlnrgvegpfsWiteGkvdivaDimlPede.delslskvlseildkleeevtskkalee 376
                  +++++e+++++            +w+k++rlr+d+l+++hlnrg+egpf+Wi +G+vd+v+D+ lP++e d+++++++l+ei d++ +e+++ ++   
   CCD24645.1 388 TNTQQEATNDNnnnndshhgdsPPWRKITRLRVDNLDVEHLNRGIEGPFGWIRQGQVDMVGDVLLPDKEaDKSEIKAILAEIGDRFLNEAKKLSS--- 482
                  554444444434556677788799******************************************9777999*************998887772... PP

  MDM31_MDM32 377 eekseelakeaksaeeseeekeeeeekeeeeeekyvvvdlklklndvkAavPlftkdlsyvnnaliRpivayiNskrtyipikcrvvkklsdfdgswt 474
                                 +s++++++++e+++ ++e+y+++ + lkl++vkA+vPlf ++l+y+n +liRpiv+yiNs+rtyipi+c+v+k+++df+gswt
   CCD24645.1 483 ---------------SSTTRSSRDTENTTIDPEQYFIMKFFLKLKNVKAEVPLFPSELNYINGTLIRPIVGYINSRRTYIPIECKVIKNVADFEGSWT 565
                  ...............2344555667778899******************************************************************* PP

  MDM31_MDM32 475 vydsgLmddlsaevYealakdvadeearkrrlkkvglWslqlavqalllgl 525
                  +yds Lm+dlsaevY+a+ak+vad+++rk+r+k++++Wslq+++q++l+++
   CCD24645.1 566 IYDSYLMKDLSAEVYDAFAKYVADQQQRKKRFKRISFWSLQMLIQLVLMSV 616
                  ************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4360.39
//
Query:       CCD24646.1  [L=457]
Description: hypothetical protein NDAI_0D03320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.14   12.1   0.0       0.34   10.9   0.0    1.6  1  DUF218    DUF218 domain


Domain annotation for each model (and alignments):
>> DUF218  DUF218 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.9e-05      0.34      44      94 ..      21      68 ..       8     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.9e-05
      DUF218 44 eamaeylrelgvpeeailledrsrnTeenarfskell...kersillVTsafHm 94
                + ++++lr+   pe + l+ +++++T en+  + el+   +      V++a+H+
  CCD24646.1 21 KGLKRVLRKYDLPE-NWLTPTQGNSTQENINKTNELIsilQ-----EVSNAMHS 68
                56899********7.9********************96542.....48888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1238  (0.0690501); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 3299.75
//
Query:       CCD24647.1  [L=780]
Description: hypothetical protein NDAI_0D03330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-51  174.2   4.3    2.4e-51  174.2   4.3    2.1  2  RIX1      rRNA processing/ribosome biogenesis
  ------ inclusion threshold ------
      0.055   13.9   0.5       0.13   12.7   0.1    1.8  2  DUF281    Domain of unknown function (DUF281)


Domain annotation for each model (and alignments):
>> RIX1  rRNA processing/ribosome biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   4.3   2.6e-55   2.4e-51       5     187 ..      11     200 ..       7     201 .. 0.96
   2 ?   -2.8   0.0      0.48   4.3e+03      50      84 ..     377     411 ..     353     417 .. 0.61

  Alignments for each domain:
  == domain 1  score: 174.2 bits;  conditional E-value: 2.6e-55
        RIX1   5 llnrLsstppkelpsilstlashkllceellkseleelvhklvtrilsLlqskspegrwaGvcLakvtveesgeellssgstWlrallsiLekp..... 98 
                 l ++L +++++e++++l+tl+s+++++e++lksel      l+t+il+Ll+s+++ ++w+G++ a v++++++ +l+s++s++l+a++s+Le++     
  CCD24647.1  11 LVKQLDQASGYEFQTLLKTLTSPVYINEQILKSELGL----LNTKILKLLRSSDDFDVWKGCHTAVVICSYNPLVLCSHASQLLAAIYSKLEQKvgyyq 105
                 779999*******************************....*********************************************************8 PP

        RIX1  99 ......dppavlelaistlsriftltrgkptltREiltpnlpkfitallqlleeeletvlealstllplhPttfRpfankirslllsllassess 187
                       + +++le++is+ls i++l+r+kpt++RE l+p+l ++i++l++l+++e++++l++l+tll++++ttf+pf nk+r +l +l+ ++++s
  CCD24647.1 106 stistmQGKTLLETLISSLSIIMDLMRNKPTVSREGLVPKLRAIIPTLITLSQDEPQLCLPVLQTLLKRNSTTFKPFVNKYRIVLSNLIVNHYHS 200
                 77765555*********************************************99**********************************998875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.48
        RIX1  50 ilsLlqskspegrwaGvcLakvtveesgeellssg 84 
                 ++s +++  p+    G++L   +++++ ++++  g
  CCD24647.1 377 LNSIIHDIFPQIQLNGIHLWTNLIRSCNKCCIPLG 411
                 44444444455555666777767776666666555 PP

>> DUF281  Domain of unknown function (DUF281)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.4e-05      0.13       3      44 ..      67     109 ..      66     112 .. 0.88
   2 ?   -3.8   0.0         2   1.8e+04      17      28 ..     208     220 ..     205     236 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
      DUF281   3 GCstlavkCerndgtkCtdaa.Lyadttsgettsigtgpgnva 44 
                 GC t  v C+ n+ + C+ a+ L a   s  ++++g+++++++
  CCD24647.1  67 GCHTAVVICSYNPLVLCSHASqLLAAIYSKLEQKVGYYQSTIS 109
                 9*******************98888888888999999977765 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2
      DUF281  17 tkCtdaa.Lyadt 28 
                 ++C+++a L++ +
  CCD24647.1 208 LICNNFAyLHLIK 220
                 5788877555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1437  (0.0801495); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 5377.17
//
Query:       CCD24648.1  [L=338]
Description: hypothetical protein NDAI_0D03340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-62  211.5   0.0    1.8e-62  210.7   0.0    1.4  1  Chalcone_2       Chalcone isomerase like
  ------ inclusion threshold ------
      0.015   15.4   6.0      0.045   13.9   0.3    2.8  3  Chalcone_3       Chalcone isomerase-like
       0.19   10.6   0.0       0.27   10.1   0.0    1.2  1  Glyco_hydro_79n  Glycosyl hydrolase family 79, N-terminal dom


Domain annotation for each model (and alignments):
>> Chalcone_2  Chalcone isomerase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.7   0.0   3.1e-66   1.8e-62       2     204 .]     131     331 ..     130     331 .. 0.99

  Alignments for each domain:
  == domain 1  score: 210.7 bits;  conditional E-value: 3.1e-66
  Chalcone_2   2 eytLlGlGvRtVsflsiqVYvvGlYvaksdiaklqkvlqskllskkviat.tlvssekeelkkalldpekseelweelldegirtavrivPvrnTdfsh 99 
                 +y+LlG+GvR+V++++++VY++G+Yva++d+  + k ++s++lsk++i+t ++++s+ e+l+ al dp ks  l++elld+gi+++++i+P+rnT+f+h
  CCD24648.1 131 KYSLLGVGVRSVTVVTFKVYALGIYVADKDKYMIPKLFNSNYLSKAFIDTfDSTKSHAENLRLALMDPVKSTILINELLDNGINLMAKISPMRNTNFNH 229
                 69************************************************999********************************************** PP

  Chalcone_2 100 LrDGfvraitarakkkkeeeedeefgeslkefkslFnrkgsvpkgkeLlLerdangeLsvlyedkkkkkleklGrvedervsrllwlnYLagkkvasee 198
                 LrDG++r+i+++++++   +++e++++++ +++++Fnrkg + k+++L++++ ++g+L++++++kk++++ klGr+ed++++r+l+++Y +g+ ++s  
  CCD24648.1 230 LRDGMIRTIKKHPEAE---KNKEALDKGILDLRKAFNRKGALDKDDDLYVQLLNDGALQLTFHSKKRDEFFKLGRCEDPIIGRYLFSQYVSGPAPLSIM 325
                 ***************9...89****************************************************************************** PP

  Chalcone_2 199 arksvv 204
                 +r+ vv
  CCD24648.1 326 TRDAVV 331
                 **9986 PP

>> Chalcone_3  Chalcone isomerase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.36   2.1e+03      58      98 ..      32      70 ..      13      82 .. 0.60
   2 ?   13.9   0.3   7.5e-06     0.045      19      47 ..     131     161 ..     117     177 .. 0.84
   3 ?    3.6   0.1     0.011        65      67     134 ..     223     294 ..     210     311 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.36
  Chalcone_3 58 kairleilsrdvsseklkkaleegfekntaeelaelkarie 98
                k  rl+    ++s++ +++++++   ++++++ +   + i+
  CCD24648.1 32 KSSRLTS--LMLSNKPFQRKFSSTTGRSQQQQQQTEPPAIK 70
                3445544..45677888888877777776666655555555 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 7.5e-06
  Chalcone_3  19 eLkLnGaGlRs..kfffkvYvagLYlpekss 47 
                 + +L G+G+Rs  ++ fkvY+ g Y+++k +
  CCD24648.1 131 KYSLLGVGVRSvtVVTFKVYALGIYVADKDK 161
                 56799*****83356799********99865 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.011
  Chalcone_3  67 rdvsseklkkaleegfek..ntaeelaelkariekfkalfak..evkkgdvitldylpgkgvvvvvngkqlg 134
                 r+ + + l + + + ++k  ++++++++l++ i +++++f++   + k+d + ++ l++  +++++  k++ 
  CCD24648.1 223 RNTNFNHLRDGMIRTIKKhpEAEKNKEALDKGILDLRKAFNRkgALDKDDDLYVQLLNDGALQLTFHSKKRD 294
                 5556677778888888884446778899************863369***********999999998877765 PP

>> Glyco_hydro_79n  Glycosyl hydrolase family 79, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   4.6e-05      0.27     231     276 ..     137     186 ..      93     194 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 4.6e-05
  Glyco_hydro_79n 231 sgekvvdvvthhiynlG...aGvdkelvekildpsyldkv.aetfkdlqk 276
                       g ++v vvt+ +y lG   a +dk ++ k+ +++yl+k   +tf++ ++
       CCD24648.1 137 VGVRSVTVVTFKVYALGiyvADKDKYMIPKLFNSNYLSKAfIDTFDSTKS 186
                      56789************6666889*************9862577777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2525.29
//
Query:       CCD24649.1  [L=283]
Description: hypothetical protein NDAI_0D03350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.9e-18   65.5   0.0    5.9e-18   65.5   0.0    2.0  2  VWA_2           von Willebrand factor type A domain
    8.9e-05   22.8   0.5    0.00015   22.0   0.5    1.3  1  VWA             von Willebrand factor type A domain
    0.00021   21.2   0.3    0.00033   20.5   0.3    1.3  1  Ssl1            Ssl1-like
     0.0057   16.7   0.1     0.0057   16.7   0.1    1.8  2  Serine_rich     Serine rich protein interaction domain
  ------ inclusion threshold ------
      0.013   15.7   2.7      0.022   15.0   2.7    1.4  1  DUF5308         Family of unknown function (DUF5308)
       0.02   13.7   3.2      0.023   13.5   3.2    1.2  1  Presenilin      Presenilin
        4.8    6.7  28.2        8.9    5.8  28.2    1.4  1  Spt20           Spt20 family
        5.1    8.1  11.9        9.7    7.2  11.9    1.5  1  DUF4834         Domain of unknown function (DUF4834)


Domain annotation for each model (and alignments):
>> VWA_2  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   2.6e-21   5.9e-18       1     103 [.       6     114 ..       6     117 .. 0.89
   2 ?   -2.0   0.7       2.6   5.8e+03      11      24 ..     237     250 ..     224     269 .. 0.51

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 2.6e-21
       VWA_2   1 lvfvlDtSgSmrngdygptrleaakdaveallk....slpgdrvglvtfsd.gpevlipltkdkakilnalrnleakgggtnlaaaLqlarkalkkrr. 93 
                 +v+++D+S++ rngdy  tr+ea+ dave +++    s+p+++++l++ ++ +p+vl+++t+  +kil+ l+++ + gg  ++++a+q a  +lk+r+ 
  CCD24649.1   6 TVLIVDNSEYSRNGDYPRTRFEAQIDAVEFIFQakrnSNPENTLALLSSAGsNPTVLSTFTSEFGKILSGLHDTSI-GGSIQFTTAIQIAALTLKHRQn 103
                 69*******************************8665559*******999989**********************9.6********************9 PP

       VWA_2  94 .kgekrvivli 103
                   +++r+++++
  CCD24649.1 104 qIQHQRIVMFV 114
                 44445555544 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.6
       VWA_2  11 mrngdygptrleaa 24 
                 m+++++++ r  ++
  CCD24649.1 237 MEEEQQRQERVRQQ 250
                 33333323222222 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.5   6.8e-08   0.00015       3     148 ..       7     153 ..       7     181 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 6.8e-08
                 EEEEE-STTS.....CHHHHHHHHHHHHHHHHHHTBTTTTEEEEEEEESSS.EEEEEETTSHCHHHHHHHHHHTGSGGGGSSC-HHHHHHHHHHHHHHH CS
         VWA   3 vfvlDgSgsm.....geenfekvkefikklveklevgpegtrvglvqfsse.vktefslndysskeellsalnnlkysgggttntgkalkyaleklfks 95 
                 v+++D+S+        + +fe   ++++ +++    +++   ++l++ +++ +++   +++  +  ++ls l+++  +gg+ +   +a++ a+ +l ++
  CCD24649.1   7 VLIVDNSEYSrngdyPRTRFEAQIDAVEFIFQAKRNSNPENTLALLSSAGSnPTVLSTFTS--EFGKILSGLHDT-SIGGSIQ-FTTAIQIAALTLKHR 101
                 6788999888666667788889999999999999987777778888777665888899999..4489******95.6666666.899*****9999888 PP

                 HGTSSTTSEEEEEEEES..S--CSSHTHHHHHHHHGCTEEEEEEEESSSHHHHHH CS
         VWA  96 sagaRenakkviilltd..GksndgdpkeaaneakeqgikvfavGvgnadekelL 148
                 ++    +++++++++ +   +++d ++ + a+++k+++i + ++ +g++d++++L
  CCD24649.1 102 QNQ--IQHQRIVMFVCSpiTEPKD-ELIKLAKKLKKNKIAIDIINFGEIDTNNEL 153
                 888..8888888888886666666.*********************888876644 PP

>> Ssl1  Ssl1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.3   1.5e-07   0.00033       1     138 [.       9     144 ..       9     168 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 1.5e-07
                 EEE-SGGGGSSSSSS-HHHHHHHHHHHHHHHHHHHSTT-EEEEEEEETTEEEEEEEEES-HHHHHHHHHHHTTS---S---HHHHHHHHHHHHSSS-TT CS
        Ssl1   1 vlDlsrameekdlkpsrlavviklleefveeffdqnPisqlgliavkdkkaekltelsGnprkhikaLkslreveakgepsLqnaLelalasLkkvpsh 99 
                 ++D s+   + d + +r++ +i ++e   +   + nP   l+l++        l++++    ++ k L  l ++++ g      a+++a  +Lk+    
  CCD24649.1   9 IVDNSEYSRNGDYPRTRFEAQIDAVEFIFQAKRNSNPENTLALLSSAGSNPTVLSTFT---SEFGKILSGLHDTSIGGSIQFTTAIQIAALTLKHRQNQ 104
                 689***********************999999***********998777666666555...56777788888999*******************99887 PP

                 SEEE.EEEEE-SS----SS-HHHHHHHHHHTT-EEEEEEE CS
        Ssl1 100 asre.vliifsslstcDPgdiyetidelkkekirvsvigL 138
                  +   +++ + s  t    ++ ++ ++lkk+ki + +i  
  CCD24649.1 105 IQHQrIVMFVCSPITEPKDELIKLAKKLKKNKIAIDIINF 144
                 6544144444444454455699**************9975 PP

>> Serine_rich  Serine rich protein interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.5e-06    0.0057      86     155 ..     115     184 ..      76     185 .. 0.82
   2 ?   -5.1   4.3         8   1.8e+04      79     102 ..     244     267 ..     227     278 .. 0.59

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.5e-06
  Serine_rich  86 lqkledsdqilqetsqeLdsceWslealasdkkqekpddlDrlvmvartvpdDvkqlasfiqgnaklLFk 155
                   +++++ ++ l + +++L +++ +++ +   + +++++ l  +++va +v+d+ ++l+++  +n++lL++
   CCD24649.1 115 CSPITEPKDELIKLAKKLKKNKIAIDIINFGEIDTNNELLMEFISVANNVSDESSNLVTIAPSNSRLLYE 184
                  4789999999**********************************************************86 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 8
  Serine_rich  79 qtkLrkqlqkledsdqilqetsqe 102
                  q++ r+q q+ ++++q  q+ +qe
   CCD24649.1 244 QERVRQQEQQQQQQQQQQQQQQQE 267
                  455555555555555555554444 PP

>> DUF5308  Family of unknown function (DUF5308)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   2.7     1e-05     0.022      51     122 ..     179     277 ..     160     283 .] 0.63

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1e-05
     DUF5308  51 qrimVetessgpvvlqsyldpaeaa................................assssspesaasssadssrekktesaeaeeqdqlagaetssa 117
                  r++ e   s++v+l+s ++ ++ +                                +      e++++++++ +++++++++++++q+q++ +++ss+
  CCD24649.1 179 SRLLYESIASSAVILESGVTGNDLMmgaggaggmdggfmdfgvdpsmdpelamalrlS-----MEEEQQRQERVRQQEQQQQQQQQQQQQQQQEQQSSE 272
                 5888899999***********98889*****************999988776443221.....222222222222222222222222333333333333 PP

     DUF5308 118 gsaaa 122
                 ++ ++
  CCD24649.1 273 DQPSN 277
                 33333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.2     1e-05     0.023     236     274 ..     239     275 ..     165     283 .] 0.60

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1e-05
  Presenilin 236 eeeeeaekkkeeasesskeeeseeesseksaqsseseee 274
                 ee++++e+ +++++++++++++++++++++++s++  + 
  CCD24649.1 239 EEQQRQERVRQQEQQQQQQQQQQQQQQQEQQSSED--QP 275
                 11111111111111111111111111111111111..11 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  28.2     0.004       8.9     107     143 ..     240     280 ..     224     283 .] 0.49

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.004
       Spt20 107 qkqsq....qnqqqqqqqqqqqqqqqqqqeqqqqqnekdst 143
                 ++q+q    q++qqqqqqqqqqqqqqq+q+++++q +++++
  CCD24649.1 240 EQQRQervrQQEQQQQQQQQQQQQQQQEQQSSEDQPSNQEE 280
                 33444344444444444444444444444444444443333 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  11.9    0.0043       9.7      40      78 ..     241     279 ..     221     283 .] 0.50

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0043
     DUF4834  40 ksaqkqfgnstnsnqqksqsrsetkeegeiieeerseke 78 
                 ++ q++ +++ +++qq++q+++++++e+++ e+++s++e
  CCD24649.1 241 QQRQERVRQQEQQQQQQQQQQQQQQQEQQSSEDQPSNQE 279
                 333444344444444444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4040  (0.225333); expected 358.6 (0.02)
Passed bias filter:                     1320  (0.0736237); expected 358.6 (0.02)
Passed Vit filter:                       336  (0.0187406); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.33s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 1883.46
//
Query:       CCD24650.1  [L=362]
Description: hypothetical protein NDAI_0D03360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-54  182.2   0.1    1.1e-53  181.8   0.1    1.2  1  Homoserine_dh  Homoserine dehydrogenase
    7.1e-23   81.5   0.0    1.4e-22   80.6   0.0    1.5  1  NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
  ------ inclusion threshold ------
      0.025   15.1   0.0        0.1   13.2   0.0    2.1  1  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
      0.099   12.1   0.0       0.26   10.7   0.0    1.6  2  Nop            snoRNA binding domain, fibrillarin


Domain annotation for each model (and alignments):
>> Homoserine_dh  Homoserine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.8   0.1   2.3e-57   1.1e-53       1     173 []     154     356 ..     154     356 .. 0.92

  Alignments for each domain:
  == domain 1  score: 181.8 bits;  conditional E-value: 2.3e-57
                    --HHHH.HHTCTTSEEEEEEEE--HHHHHHHHHHHCHT...T-HHHHHHHHHHTTSS-SSTHHHHTTHHHHHHHHHHHHHHCTTT-.-GGGSEE-- CS
  Homoserine_dh   1 Piiktl.keilsgdritrieGilngtlnyiltemeeeg...asfsevlkeaqelGyaeaDptdDveGlDaarKlailarlafglev.eledveveg 91 
                    Pii+ l + i++gd++++ieGi++gtl+yi++e+++ +    +fs+v+k a++lGy+e+Dp+dD++GlD+arK++i+ar+  glev ++++++v++
     CCD24650.1 154 PIISFLrEIIATGDEVEKIEGIFSGTLSYIFNEFSTIApndVKFSDVVKVAKKLGYTEPDPRDDLNGLDVARKVTIVARIS-GLEVeNPTSFPVQS 248
                    9*****888999***********************54454577************************************99.****88999***** PP

                    ST...............TS-HHH......HHHHHCTTEEEEEEEEE....CEEEEEEEEEETTSGGGHSSST-EEEEEEESSSEE.EEEEES-SSH CS
  Homoserine_dh  92 is...............kltaed......ikeakeegkvlklvasa....vearVkpelvpkshplasvkgsenavlvetdrlge.lviqGpgaGa 161
                    +                kl+++d       +ea++egkvl++++++     +++V++e++++shp+a +kgs+n+++++t+r+++ +viqG+gaGa
     CCD24650.1 249 LIpkalesietadefleKLSQYDdelsklKEEAAKEGKVLRFIGKVdvktNTVSVGIEKYDASHPFAALKGSDNVISIKTKRYHNpVVIQGAGAGA 344
                    8888888777777777777777789999899999***********8855438********************************99********** PP

                    HHHHHHHHHHHH CS
  Homoserine_dh 162 epTAsavlsDll 173
                    ++TA++vl+D++
     CCD24650.1 345 DVTAAGVLGDVI 356
                    **********97 PP

>> NAD_binding_3  Homoserine dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   3.1e-26   1.4e-22       1     115 [.      13     144 ..      13     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 3.1e-26
                    --SHHHHHHHHHHHH---SSEEEEEEEEESS.EEE-TT............HHHHHT--CB---HHHHHHHH....S-EEEEE-S--HHHHTTHHHH CS
  NAD_binding_3   1 GlGaiGsavleqlkrqqseielelvavadrd.sllskd............rkallasealtldlddliahl....dpdvvVEcasseavaelvlka 79 
                    G+G++Gs++l+ql + + +i+++l a+a+++ sl s++            + al +++++tl+l+dli++l    +p ++++++ss+++a++++k+
     CCD24650.1  13 GAGVVGSSLLNQLIALNTNIKYNLIALAEAEkSLYSHNyeplqtshtwdwATALQNATEKTLPLPDLITFLskspKPVILIDNTSSAYIASFYPKI 108
                    99*****************************99*9999***********66677778889*********99***99******************** PP

                    HHTTEEEE-S--CGGG.-HHHHHHHTSSSTTS--.EE CS
  NAD_binding_3  80 Lkagkdvvtankgala.dealyeeLreaaeangakiy 115
                    +++g+++ t+nk+a++ d++++++L++  e+ g  +y
     CCD24650.1 109 VENGISIATPNKKAFSsDLKTWNQLFAGNETDGL-VY 144
                    ***************************9999887.55 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   2.2e-05       0.1       2      36 ..       9      43 ..       8      70 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
                   EEEETTSHHHHHHHHHHHHTTS.-GGCEEEEEESSC CS
  F420_oxidored  2 igiiGaGnmgealasgllaaga.qpheivvansrnp 36
                   +++iGaG +g++l+++l+a ++  +++++ a    +
     CCD24650.1  9 VAVIGAGVVGSSLLNQLIALNTnIKYNLI-ALAEAE 43
                   89******************976666666.544444 PP

>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.77   3.4e+03     156     181 ..     120     150 ..     119     154 .. 0.70
   2 ?   10.7   0.0   5.8e-05      0.26      19     108 ..     179     270 ..     165     281 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.77
                 HHHHCCCHHT--.....-SSSCHHHCSHHHH CS
         Nop 156 ekalfralkkkn.....tpkyGliyhselvq 181
                 +ka+++ lk+ n     +   Gl+yh   v+
  CCD24650.1 120 KKAFSSDLKTWNqlfagNETDGLVYHEATVG 150
                 566666666443355568899*****99997 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 5.8e-05
                 HHTTTSTCHHHHS-SHHHHHHHHHHCCCCHCCT.HH.TT.HH...HHHHHHHHHHCHHHH-SSS-S-HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         Nop  19 wYswhFpELeslvkdnleYakvvkligneredlekk.eedee...lakevimaakvtastsmgaelseedlknikelcdrvleleelrkelleY 108
                   s+ F E +++ ++++++ +vvk+ ++    +e + ++d++   +a++v+ +a+++   + +++ s    + i ++ +++ + +e+ ++l++Y
  CCD24650.1 179 TLSYIFNEFSTIAPNDVKFSDVVKVAKK-LGYTEPDpRDDLNgldVARKVTIVARIS-GLEVENPTSFPVQSLIPKALESIETADEFLEKLSQY 270
                 56788******************99994.3444333333343444888888888883.335555555556666666667777777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2532.73
//
Query:       CCD24651.1  [L=397]
Description: hypothetical protein NDAI_0D03370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-29  101.0   0.2    9.3e-29  100.4   0.2    1.3  1  DHHA2     DHHA2 domain
    1.5e-10   41.2   0.3    4.1e-10   39.8   0.1    1.9  2  DHH       DHH family
  ------ inclusion threshold ------
       0.02   15.8   0.0      0.045   14.6   0.0    1.5  1  CWC25     Pre-mRNA splicing factor


Domain annotation for each model (and alignments):
>> DHHA2  DHHA2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.2   1.6e-32   9.3e-29       1     143 []     236     391 ..     236     391 .. 0.86

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 1.6e-32
                 HHHHHHHT-STTS-HHHHTTTTEEEEE.....ETTEEEEEEEEEES-HHHHHT.THHH..HHHHHHHHH.HHT-SEEEEEEE.....ETTTEEEEEE.. CS
       DHHA2   1 kelkkaksdlsglsledllrrDyKeft....geggvkvgiasvpvslsewleekrkge..llaalekfaeerkldllvlmttfeeegdirrelllaal. 92 
                 kel +ak+d+ ++s++d+l +DyK+f+    ++  + +g+as+++sl+ wl ++ + +  +++++ +f++erkl +lvlmt  ++e+ ++rel ++   
  CCD24651.1 236 KELNHAKKDIRDFSVKDILCKDYKQFEfktkNNVPIVIGVASIVKSLD-WLYKNISPDssFKKQCVEFRNERKLTVLVLMTKKSDENGFKRELGIIPDp 333
                 699**************************9977799************.****99988************************99************867 PP

                 ......STTHHHHHT---BTEEET.....................T---HHHHTHHHHHHH CS
       DHHA2  93 ....daaeklaealekaseeleLeewkeg......aewrrvykqgnvkasRKqvaPllrea 143
                     + ++kl +   + +++l L + + +      ++ + v+ q+nv+a+RKqv+P ++ea
  CCD24651.1 334 sfkpENVNKLVD---MITGQLALVNDTIStmtdteEDPYLVFDQQNVQATRKQVVPFVKEA 391
                 544433333444...444456666444447788889999*******************997 PP

>> DHH  DHH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   6.8e-14   4.1e-10       3      83 ..      32     171 ..      31     214 .. 0.85
   2 ?   -3.0   0.0       1.4   8.6e+03      39      55 ..     246     262 ..     222     282 .. 0.62

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 6.8e-14
                 EEE-ECSSSHHHHHHHHHHHHC.................................................................ECS--TCGGCGC CS
                 xxxxxxxxxxxxxxxxxxxxxx.................................................................xxxxxxxxxxxx RF
         DHH   3 livghknpDtDsigSaialanl.................................................................lvDhneksqave 36 
                 +++g ++ D Dsi+Sai +a++                                                                 lvDhn++ +++ 
  CCD24651.1  32 IVYGNESADFDSITSAISYAYFsyihhgyqkginpiipiiniprlelklrkdvmialdkmsinedtlffmddldkwedihkgkvsarLVDHNDQPKQQY 130
                 5889*****************777777777777777777788888888888888888888888888889999999999999999999**********98 PP

                 CHHCCCSEEEEEEE-S---SS---SS--EEEE-SSS-HHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         DHH  37 geakeeaedviiiDHHrlgeefetlapilflnepvgstaeivaelle 83 
                 g     ++ + iiDHH  +++f + +p +++  p+gs+ ++v+++  
  CCD24651.1 131 G----VDKVTGIIDHHFDQKNFLDAKPRIIR--PTGSCTSLVFNYWY 171
                 8....89999***************999997..99999999998744 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
                 HCCCSEEEEEEE-S--- CS
                 xxxxxxxxxxxxxxxxx RF
         DHH  39 akeeaedviiiDHHrlg 55 
                  +++ +d+++ D+ + +
  CCD24651.1 246 RDFSVKDILCKDYKQFE 262
                 34556666666666665 PP

>> CWC25  Pre-mRNA splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   7.6e-06     0.045       3      98 ..     280     383 ..     279     385 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 7.6e-06
       CWC25   3 erleWMYe..gpkeagaaeeeneeyllGKkrvdkllegkdkaekkkkakas.......kaesaaeqggaarle...kvansardtanklreDPllaIkk 89 
                 + l+W+Y+  +p  +++++++  e+  ++k     l  k+++e+  k   +       + + ++ ++  ++++   + +n + +t++  +eDP l + +
  CCD24651.1 280 KSLDWLYKniSP--DSSFKKQCVEFRNERKLTVLVLMTKKSDENGFKR--ElgiipdpSFKPENVNKLVDMITgqlALVNDTISTMTDTEEDPYLVFDQ 374
                 579*****5545..67799*********99443444444444544433..3569***9444444455555555323556667777777*********99 PP

       CWC25  90 qeqealkal 98 
                 q  +a +++
  CCD24651.1 375 QNVQATRKQ 383
                 999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2894.39
//
Query:       CCD24652.1  [L=294]
Description: hypothetical protein NDAI_0D03380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-84  280.2   0.2    9.2e-84  279.1   0.0    1.6  2  Mgm101p       Mitochondrial genome maintenance MGM101
  ------ inclusion threshold ------
      0.032   14.2   0.0       0.24   11.3   0.0    2.2  2  CHASE5        Periplasmic sensor domain found in signal trans
          2    7.5  11.2        2.6    7.1  11.2    1.1  1  SprA-related  SprA-related family


Domain annotation for each model (and alignments):
>> Mgm101p  Mitochondrial genome maintenance MGM101
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.85   5.1e+03      84     116 ..      20      53 ..       7      54 .. 0.58
   2 !  279.1   0.0   1.5e-87   9.2e-84       1     170 []     125     294 .]     125     294 .] 1.00

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.85
     Mgm101p  84 grlvsearGeqeyfeees.iptategcksnalmR 116
                 +rl+++++  ++  ++ +  +tat +  sn+ +R
  CCD24652.1  20 TRLITTTTSTSSSTSTATaPATATATISSNSTVR 53 
                 5666666655555444431456666667776665 PP

  == domain 2  score: 279.1 bits;  conditional E-value: 1.5e-87
     Mgm101p   1 dweesfkglskkpfskeaadvllapleeedveikpdGllYlpeikYrriLnkafGpggWglaprgetvvtekivtreyaLvvegrlvsearGeqeyfee 99 
                 dw++s++g+++kpf+++++  l+++l+++d+eikpdGl+YlpeikYrriL k fG ggWgl+pr+et+vt+++vtreyaL+++g+lvs+arGeq+yf+e
  CCD24652.1 125 DWTKSWHGIGSKPFNATIQTELMKELDPKDIEIKPDGLIYLPEIKYRRILTKVFGAGGWGLVPRSETIVTSSLVTREYALICHGQLVSVARGEQDYFNE 223
                 8************************************************************************************************** PP

     Mgm101p 100 esiptategcksnalmRcCkDlGiaseLWdPefirkfkkkkaeevwvehvttkkkkklwkrkdeeveyPyk 170
                  +iptategcksnalmRcCkDlGi+seLWdP fi+kfk++ + +++vehv+tkkkkk+w rkd++veyP+k
  CCD24652.1 224 GGIPTATEGCKSNALMRCCKDLGIGSELWDPVFIKKFKTTFCMDKFVEHVVTKKKKKIWLRKDRQVEYPFK 294
                 *********************************************************************97 PP

>> CHASE5  Periplasmic sensor domain found in signal transduction proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.14   8.5e+02      22      54 ..      83     116 ..      71     136 .. 0.69
   2 ?   11.3   0.0     4e-05      0.24      27      83 ..     146     208 ..     133     216 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.14
      CHASE5  22 evLaeslWnlDerl.lklqLeGlvrLPdidyiei 54 
                 ++L +sl n+  +   ++  +Gl  LP+i   e 
  CCD24652.1  83 KTLNQSLGNIPLEStTTTATKGLPDLPEIITKEE 116
                 5678888888765415567789999999865543 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4e-05
      CHASE5  27 slWnlDerllklqLeGlvrLPdidyieike....dsdvrv..aaGepktssilnkefpLeyks 83 
                  +  lD + ++ + +Gl+ LP+i+y +i       ++  +       +tss +++e++L  + 
  CCD24652.1 146 LMKELDPKDIEIKPDGLIYLPEIKYRRILTkvfgAGGWGLvpRSETIVTSSLVTREYALICHG 208
                 556799999****************99987555422222211233346778888888886655 PP

>> SprA-related  SprA-related family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  11.2   0.00044       2.6      41     112 ..      22      98 ..       9     125 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00044
  SprA-related  41 vasvvsstnsssvdati.sdatsinstvktard...atasastsesgsvsdtikpssaeqan.ekadfaaifgqeee 112
                   ++++++st ss+++at+ + at++ s+ +t+r+   +  s s s+ +s++ t++++ a +++ ++++  +i  ++ +
    CCD24652.1  22 LITTTTSTSSSTSTATApATATATISSNSTVRKpttTYRSSSASQPSSTTATKTATKAVFSKtLNQSLGNIPLESTT 98 
                   45666777777777554345566666666665411155677777778888888888888776257777777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1145  (0.063863); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 2150.45
//
Query:       CCD24653.1  [L=610]
Description: hypothetical protein NDAI_0D03390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.02   15.1   0.0      0.038   14.2   0.0    1.5  1  5_nucleotid_C  5'-nucleotidase, C-terminal domain


Domain annotation for each model (and alignments):
>> 5_nucleotid_C  5'-nucleotidase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   2.1e-06     0.038      23      76 ..     405     458 ..     375     477 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.1e-06
                    HHHHHHHHHTGSTT--EEEEEGGG----BTTTEEEHHHHHHHS-S--EEEEEEE CS
  5_nucleotid_C  23 lgnliadalraaagadialangggiradlpaGditvkdlltvlpfgntlvvvel 76 
                    l +l  d + +++   ++++n g++r+dl +G+ t++  + v+pf n+   +e+
     CCD24653.1 405 LPRLRSDTFDTNSISRFVIMNTGAVRYDLHKGPFTKDSEYIVMPFTNDWKYLEI 458
                    44444455566666679******************************8766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4678.78
//
Query:       CCD24654.1  [L=261]
Description: hypothetical protein NDAI_0D03400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-39  131.5   1.0    5.9e-38  128.6   0.7    2.1  2  Ribosomal_S4e  Ribosomal family S4e
    1.4e-25   88.7   0.0    2.8e-25   87.7   0.0    1.5  1  40S_S4_C       40S ribosomal protein S4 C-terminus
    2.4e-19   69.2   6.9    2.4e-19   69.2   6.9    1.8  2  RS4NT          RS4NT (NUC023) domain
    4.2e-08   32.8   0.6    8.5e-08   31.8   0.0    1.8  2  S4             S4 domain
    4.1e-06   26.5   1.8    4.1e-06   26.5   1.8    3.0  4  KOW            KOW motif
  ------ inclusion threshold ------
       0.04   13.1   0.1       0.14   11.4   0.0    1.8  2  dCache_2       Cache domain


Domain annotation for each model (and alignments):
>> Ribosomal_S4e  Ribosomal family S4e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.7     2e-41   5.9e-38       1      75 []      95     169 ..      95     169 .. 0.99
   2 ?    0.7   0.0      0.17   5.1e+02      13      53 ..     203     244 ..     200     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 2e-41
                    TTEEEEEEE-TTSSEEEEEE-TTCCCEEEEEECEEEEECCCEEEEEETTS-EEEESSTT-STTEEEEEETTTTEE CS
  Ribosomal_S4e   1 tgenyrllydtkgrfalhkItseeakyKLcKikkkttvkkgipqlvthdGrtirypdpdikvnDtvkidleenkI 75 
                    t+en+rl+yd+kgrfa+h+It+eea+yKL K+kk++++kkg+p++vthdGrtirypdp+ikvnDtvk+dl ++kI
     CCD24654.1  95 TNENFRLVYDVKGRFAVHRITDEEASYKLAKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKVDLASGKI 169
                    8*************************************************************************9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.17
                    SSEEEEEE-TTCCCEEEEEECEEEEE.CCCEEEEEETTS-EE CS
  Ribosomal_S4e  13 grfalhkItseeakyKLcKikkkttv.kkgipqlvthdGrti 53 
                    g f l++I+++  +  +++ ++++++   g+p++ +  G+ i
     CCD24654.1 203 GGFDLVHIKDSLDNTFVTRLNNVFIIgEPGKPYISLPKGKGI 244
                    678888888888888899999998751579999999988766 PP

>> 40S_S4_C  40S ribosomal protein S4 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   9.2e-29   2.8e-25       1      48 []     212     259 ..     212     259 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 9.2e-29
                 -SSS-EEEEEGGGEEE--STTS-SS---SS-S----HHHHHHHHHHHH CS
    40S_S4_C   1 DaaGntFATRlsNvFvIGkgnkpwvsLPkgkGiklsiaeerdkrlakk 48 
                 D+++ntF+TRl+NvF+IG+  kp++sLPkgkGikl+iaeerd+r+a++
  CCD24654.1 212 DSLDNTFVTRLNNVFIIGEPGKPYISLPKGKGIKLTIAEERDRRRAQQ 259
                 99*******************************************985 PP

>> RS4NT  RS4NT (NUC023) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   6.9     8e-23   2.4e-19       1      37 []       3      39 ..       3      39 .. 0.98
   2 ?   -3.5   0.0         4   1.2e+04      18      27 ..     131     140 ..     130     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 8e-23
                -S----EETTTS-TTS---SSSSSEE----SSSS-TT CS
       RS4NT  1 rGpkkHLKrlaAPkhWpldkkegvfavkPspGPHklr 37
                rGpkkHLKrlaAP+hW+ldk++g +a++Ps+GPHklr
  CCD24654.1  3 RGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLR 39
                8**********************************97 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4
                 --SSSSSEE- CS
       RS4NT  18 ldkkegvfav 27 
                 l kk+  ++v
  CCD24654.1 131 LGKKGVPYVV 140
                 8899999988 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.8e-11   8.5e-08       2      48 .]      43      90 ..      42      90 .. 0.95
   2 ?   -2.4   0.1       1.4   4.1e+03      31      48 .]     143     160 ..     140     160 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.8 bits;  conditional E-value: 2.8e-11
                EHHHHH.HHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCEE CS
          S4  2 RLdkvl.arlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDvi 48
                +L ++l  rl++a   re++ + ++++V+V+Gkv++d  y+ +++Dvi
  CCD24654.1 43 PLIVFLrNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPTGFMDVI 90
                67889999**************************************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
                 TTEEE--TT-EE-TTCEE CS
          S4  31 NGkvvkdpsyrVkpgDvi 48 
                 +G+ ++ p  ++k++D++
  CCD24654.1 143 DGRTIRYPDPNIKVNDTV 160
                 788888888888888876 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       3.3   9.8e+03      20      25 ..      70      75 ..      69      77 .. 0.62
   2 ?   -1.1   0.3      0.72   2.1e+03      16      26 ..     123     133 ..     122     141 .. 0.72
   3 ?   -2.9   0.2       2.5   7.6e+03       2       7 ..     157     162 ..     156     163 .. 0.76
   4 !   26.5   1.8   1.4e-09   4.1e-06       2      32 .]     178     211 ..     177     211 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.3
                EEEETT CS
         KOW 20 vkvdqh 25
                vkvd +
  CCD24654.1 70 VKVDGK 75
                566665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.72
                 EEEEEEEETTT CS
         KOW  16 tGkVvkvdqhk 26 
                  +kV+kv   k
  CCD24654.1 123 LAKVKKVQLGK 133
                 68999998776 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.5
                 TSEEEE CS
         KOW   2 GdhVkV 7  
                  d+VkV
  CCD24654.1 157 NDTVKV 162
                 688988 PP

  == domain 4  score: 26.5 bits;  conditional E-value: 1.4e-09
                 TSEEEESSSTTTTCEEEEEEEETTT...TEEEEE CS
         KOW   2 GdhVkVvsGphkGktGkVvkvdqhk...vrVfvd 32 
                 G+ V+V++G++ G++G++v+ ++h    + V+++
  CCD24654.1 178 GKLVYVTGGRNLGRIGTIVHKERHDggfDLVHIK 211
                 99***********************999999986 PP

>> dCache_2  Cache domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.35   1.1e+03     195     252 ..      40      96 ..      36     110 .. 0.57
   2 ?   11.4   0.0   4.5e-05      0.14     194     240 ..     123     168 ..     110     205 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.35
    dCache_2 195 ktlksirygnngyifiydtdg.niilhplkkelngknllevkdkkgkllqelleaakkk 252
                 ++l  i +  n+  ++++    ++il   + + +gk +++++ ++g  + + +    ++
  CCD24654.1  40 ESLPLIVFLRNRLKYALNGREvKAILMQRHVKVDGKVRTDTTYPTG--FMDVITLEATN 96 
                 4555555555555555555545666666677777777776666555..55555555555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4.5e-05
    dCache_2 194 lktlksirygnngyifiydtdgniilhplkkelngknllevkdkkgk 240
                 l+++k++++g++g  ++ + dg++i +p +++++ +++++v+ ++gk
  CCD24654.1 123 LAKVKKVQLGKKGVPYVVTHDGRTIRYP-DPNIKVNDTVKVDLASGK 168
                 789*************************.888888888877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1907.55
//
Query:       CCD24655.1  [L=818]
Description: hypothetical protein NDAI_0D03410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   9.2e-111  370.9   0.0   1.1e-110  370.6   0.0    1.1  1  Glyco_hydro_47  Glycosyl hydrolase family 47


Domain annotation for each model (and alignments):
>> Glyco_hydro_47  Glycosyl hydrolase family 47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.6   0.0  6.3e-115  1.1e-110       2     457 ..      55     523 ..      54     524 .. 0.92

  Alignments for each domain:
  == domain 1  score: 370.6 bits;  conditional E-value: 6.3e-115
                     HHHHHHHHHHHCTTSSEEETTTTEE.............E-SS.SS-CCHHHHHHHHHHCCHHHHHHHHHHHHHHC-..---S.SS.EEEHHHHHH CS
  Glyco_hydro_47   2 fkhswegYkkyAwghDelrPlskkg.............rdtfgglgatlvDsLdtllimglkeefeeaveavekki..dfdtsdskevsvFEttI 81 
                     f+ + ++Y + ++++De+rP+s+++             +d++g+++atl+DsL t+++mg k++f + ve v+ ++  +f+  d+ +v+vFEttI
      CCD24655.1  55 FQFGLSKYLEVGYPYDEVRPISCEPktrnfndltdlptNDVLGNFTATLIDSLTTVAVMGDKNQFYNLVELVRVTFpnKFE-IDA-TVQVFETTI 147
                     888999*******************************************************************88855566.455.89******* PP

                     HHHHHHHHHHHHH............S-HHHHHHHHHHHHHHHHGGGSSTTS---SEEETTT--EE-.STCGCEEEHHHHCSSHHHHHHHHHHHT- CS
  Glyco_hydro_47  82 RyLGGLlsaydls...........ekkedvllekAveladrLlpAFdtpsglpvarvnlkkrkaskkerassesvlAelgslslEftrLsqlTgd 165
                     R+LG+L+s++ ++            +++ +ll+ A+++++rLlp + t+sglpv+r+nlk ++++ ++ + +e++lA +++ +lEf  Ls lTgd
      CCD24655.1 148 RILGSLISSHLYAtdarkscnlldMGYDGILLDLAKDIGERLLPVYLTESGLPVSRINLKAGFERYSRLQMNENNLAGMATPMLEFGMLSLLTGD 242
                     ************99*********999**********************************999999999998999******************** PP

                     CHHHHHHHCCHHHHHCHCC.HHHTTB-BSEEETTT--EESTEE-SSTTTHHHHHHHHHHHHHCTS--HHHHHHHHHHHHHHHHH.TEEE-TTT.. CS
  Glyco_hydro_47 166 kkYedlaervtkaleelqektklpglvpikidastgkfvaekislgargDSyYEYllKqylllggeeeqyrkmyeealdaikkhllfrpskkked 260
                     +kY+++++ +++ l++ q     +gl+p ++d+++ ++ +  +++ga++DS+YEY+lK ++l++  +e++ +++ee++++++ +     sk +  
      CCD24655.1 243 RKYMEVTRFTFDRLWK-QF-RARTGLLPVSLDPHDFTIYSFATGVGASADSFYEYALKGAILFD--DEELMNIWEESYKSLNAN-----SKLD-- 326
                     ****************.53.3479****************************************..889************999.....2223.. PP

                     --EEE-EECTTCTS.EE-EEEGGGGHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTSTTS---SEEEE-SS................S-EC CS
  Glyco_hydro_47 261 dllfvgevtsteegklspeidhLscFlgGllalgakllekeedlelAkkltegcvkayeatktglmPEifevkpces...........aeecewn 344
                       +f g+v++ + +++ p+id+Ls+F++Gl++l+       +d++     +  ++k ++ +  g +PE++e+++              +      
      CCD24655.1 327 --WFYGNVNTMGVNQVLPWIDSLSAFFPGLQVLA-------GDVDDSMMKHLLFLKQWDYF--GGIPERWEFEKPMVnivnrdvrggfR------ 404
                     ..8999999889999*******************.......9*******************..*********95432455443333221...... PP

                     TSSSSEEE-..............GGG--B----HHHHHHHHHHHHH--THHHHHHHHHHHHHHHHCEETTEE--ECETTSSS-EE-S-B-HHHHH CS
  Glyco_hydro_47 345 eekkdealk.............riedrkyllRPEaiESlfylYritgdekyrevgwemfealekatktesgysaledVtkeepekeDemeSFwla 426
                     +       +              +  ++y+lRPE+iES++ylYr+t+d+ y+++g++++++++ ++k ++g++++e+    + +++D+me+F+l+
      CCD24655.1 405 K-------EtkeqgsggggggvVLPLPWYPLRPEFIESTYYLYRATKDPFYLNIGYRILQDFKYRFKFSCGFAGIENLL--TDQRQDRMETFVLS 490
                     1.......133445567777778999*****************************************************..899*********** PP

                     THHHHHHHHC-S-TTT-..TTTEEE-TTS-EEE CS
  Glyco_hydro_47 427 EtlKYlYLlFsdedvls..ldeyVfnTeAHplk 457
                     EtlKYlYLlF+++++++   d+++f+TeAHp++
      CCD24655.1 491 ETLKYLYLLFDEDNEINhsRDNVIFSTEAHPMW 523
                     ***************99889***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 6066.20
//
Query:       CCD24656.1  [L=801]
Description: hypothetical protein NDAI_0D03420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-67  227.8   0.0    4.6e-67  226.1   0.0    1.8  2  Pkinase         Protein kinase domain
    3.8e-31  108.3   0.0    1.4e-30  106.5   0.0    1.8  2  Pkinase_Tyr     Protein tyrosine kinase
    8.6e-11   42.4   1.2    8.6e-11   42.4   1.2    2.8  1  Pkinase_C       Protein kinase C terminal domain
    4.1e-09   36.2   0.0      2e-08   33.9   0.0    2.0  2  Kinase-like     Kinase-like
    4.3e-09   36.6   4.8    9.7e-06   25.8   0.7    2.8  3  C2              C2 domain
     0.0032   16.4   9.3       0.22   10.4   9.3    2.8  1  Haspin_kinase   Haspin like kinase domain
  ------ inclusion threshold ------
      0.016   14.0   0.8        4.5    6.0   0.3    2.4  2  Pkinase_fungal  Fungal protein kinase
      0.019   14.6   0.2       0.67    9.5   0.1    2.7  2  FTA2            Kinetochore Sim4 complex subunit FTA2
      0.023   14.2   0.9       0.11   12.0   0.0    2.2  2  YrbL-PhoP_reg   PhoP regulatory network protein YrbL
       0.11   12.5   0.0       0.21   11.5   0.0    1.4  1  Adeno_E3_15_3   Adenovirus 15.3kD protein in E3 region
       0.52   10.3   5.5      0.088   12.8   0.9    2.0  2  eIF3_p135       Translation initiation factor eIF3 subunit 13


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2      0.93   1.5e+03     189     247 ..     247     308 ..     223     323 .. 0.57
   2 !  226.1   0.0   2.9e-70   4.6e-67       1     264 []     394     653 ..     394     653 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.93
                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT...SHH...HHHTTS-HHHHHHHHHHT-S CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilg...etkeklpeaseiseeakdllkkllkk 247
                 e l +kp++ ++++++ ++   d++ +  +  +   +++++ +++++ +++ ++ll+++ + 
  CCD24656.1 247 EYLKKKPVYTHRSSSQLNRLTDDDTNNNNNNNNnstTVTNQQQQQEDNKQQHQELLTNCSNP 308
                 55566666664444443333333322222222233334444444444477777777777665 PP

  == domain 2  score: 226.1 bits;  conditional E-value: 2.9e-70
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk...hpnivrlyevfeekdelylvleyveggeladllerkgsl 95 
                 +e+l+ lG+G+fG+Vy++++k+t++i+A+K+++k+ + kk+e ++++ E +il ++    +p+iv l+ +f+++++lylv+++++ggel+ +l+++g +
  CCD24656.1 394 FEVLRLLGKGTFGQVYQVKKKDTQRIYAMKVLSKKVIVKKNEvDHTIGERNILVTTAsnaSPFIVGLKFSFQTPTDLYLVTDFMSGGELFWHLQKEGRF 492
                 678999*******************************9999999*****999988766799************************************** PP

                 -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase  96 seeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltg 193
                 +e++ak+++++++ +leylH++ i++rDlKpeNiL+d +g++ ++DFGl+k   ++  +++f+gt eYlAPE+l +e++y+k vD WslGv+++e+ +g
  CCD24656.1 493 TEDRAKFYIAELVLALEYLHDNDIVYRDLKPENILLDANGNIALCDFGLSKADLKDR-TNTFCGTTEYLAPELLlDESGYTKMVDFWSLGVLIFEMCCG 590
                 **************************************************9877776.9***************999********************** PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT....HHHHHTSGGG CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt....aeellqhpyl 264
                   pf +e++++ ++k++             k+k+p ++ +s+e ++++k ll+++pk+Rl+     +el +hp++
  CCD24656.1 591 WSPFFAEDNQKMYQKIAFG-----------KVKFP-RDVLSPEGRSFVKGLLNRNPKHRLGaiddGRELRAHPFF 653
                 *****77777655555555...........23333.3467********************955444677777776 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.86   1.4e+03     219     253 ..     283     317 ..     269     322 .. 0.66
   2 !  106.5   0.0   8.4e-34   1.4e-30       3     249 ..     396     637 ..     394     640 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.86
                  HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HH CS
  Pkinase_Tyr 219 kegkrlekpekcpeelyelmkkcweedpeeRptfs 253
                  +  ++ ++ e+ +++ +el+++c +   ++ +tf 
   CCD24656.1 283 TVTNQQQQQEDNKQQHQELLTNCSNPIWHHKTTFD 317
                  44455566666778888888888888777777776 PP

  == domain 2  score: 106.5 bits;  conditional E-value: 8.4e-34
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS...-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl...khpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  + + lG+G+fG+V++ + k++++   +kV  K++    +++e ++ + e +i+ ++     p iv l         l++vt++++gG+L  +L+k+  
   CCD24656.1 396 VLRLLGKGTFGQVYQVKKKDTQRIYAMKVLSKKV--IVKKNEVDHTIGERNILVTTasnASPFIVGLKFSFQTPTDLYLVTDFMSGGELFWHLQKE-- 489
                  6788***********9999655555666666555..4556667788888888877743445778888888888999******************98.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGvl 194
                   ++t ++   +++++  ++eyL+++++v rdl   N+Ll+ n  + ++DfGL+++  k     ++++     +++apE l +++ +t+  D Ws Gvl
   CCD24656.1 490 GRFTEDRAKFYIAELVLALEYLHDNDIVYRDLKPENILLDANGNIALCDFGLSKADLK----DRTNTFCGTTEYLAPELLLDESgYTKMVDFWSLGVL 583
                  9999999999999****************************************98733....33334446789*****9887766************* PP

                  HHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 195 lwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                  ++E+++ g sp+   +n+++++k+  gk     +  ++e  +++k  ++++p++R
   CCD24656.1 584 IFEMCC-GWSPFFAEDNQKMYQKIAFGKVKFPRDVLSPEGRSFVKGLLNRNPKHR 637
                  *****9.*****************9888777777777777777777777777777 PP

>> Pkinase_C  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   1.2   5.3e-14   8.6e-11       3      46 .]     676     719 ..     674     719 .. 0.95

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 5.3e-14
   Pkinase_C   3 sdeDtsNFDpeFTeedprdtppddmpagspltssvqenFrGFtY 46 
                 s++DtsNFDpeFT ++     ++++ a +pl++ +q +F GFtY
  CCD24656.1 676 SETDTSNFDPEFTQTSTSYMNKHQPLAATPLSPAMQAKFAGFTY 719
                 9***************888888888******************9 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.41   6.8e+02      18      50 ..     398     430 ..     387     455 .. 0.82
   2 !   33.9   0.0   1.2e-11     2e-08     139     288 .]     491     637 ..     465     637 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.41
  Kinase-like  18 ellkkgdrsvvfevkdqetgeplavkvfllpse 50 
                   ll+kg ++ v++vk + t+   a+kv + +  
   CCD24656.1 398 RLLGKGTFGQVYQVKKKDTQRIYAMKVLSKKVI 430
                  6899**************999999999876655 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 1.2e-11
  Kinase-like 139 kkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaW 234
                  +  e+ a+ ++ ++l+    +L+++ +v  +++++n+lld +g + l +f+ L +a  k + ++ +    +  pEll    gy        t  +d W
   CCD24656.1 491 RFTEDRAKFYI-AELVLALEYLHDNDIVYRDLKPENILLDANGNIALCDFG-LSKADLKDRTNTFCgtTEYLAPELLLDESGY--------TKMVDFW 578
                  44566777888.7788888*******************************7.9999999999999966668889999997775........5589*** PP

  Kinase-like 235 qlGlviyriwclklPl.tlateeakeewkfklck.k...ipekvkaLlkkfLqlsqedR 288
                   lG+ i+ + c   P+  ++ +++ ++  f ++k +    + + +  +k++L+++ ++R
   CCD24656.1 579 SLGVLIFEMCCGWSPFfAEDNQKMYQKIAFGKVKfPrdvLSPEGRSFVKGLLNRNPKHR 637
                  ***************73567777777777887763211123334677777777776665 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00013      0.21       1      35 [.     186     217 ..     186     253 .. 0.75
   2 !   25.8   0.7   5.9e-09   9.7e-06      30     101 ..     288     360 ..     259     362 .. 0.69
   3 ?   -3.3   0.0       6.8   1.1e+04      69      90 ..     429     449 ..     408     454 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEE CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqk 35 
                 gklevt++eAknL     ++ s+pyv++++ +++ 
  CCD24656.1 186 GKLEVTIVEAKNLFTI--SNDSQPYVVCTF-ESSE 217
                 68***********777..789********9.3333 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 5.9e-09
                 E....ECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH.HHTTHHHHEEE CS
          C2  30 l....dgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplst.llsgeeaegwy 101
                      d+kq ++     n  nP+W++k tf+v   ++++L ++V+d  +  +d f+G+v+++ +   ++ + +++w+
  CCD24656.1 288 QqqqeDNKQQHQE-LLTNCSNPIWHHKTTFDVLG-AHSELDISVYDAAH--DDMFLGQVRLRPKIhTTNYASQDQWH 360
                 3444233333333.356666**************.***********777..777******99665445666666666 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 6.8
                 EEEECSSSTEEEEEEEEEEGHH CS
          C2  69 VfdndrlskddfiGkveiplst 90 
                 V  +++ + d+ iG+ +i ++t
  CCD24656.1 429 VIVKKN-EVDHTIGERNILVTT 449
                 333333.445689988887776 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   9.3   0.00013      0.22      17     262 ..     253     550 ..     239     559 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00013
  Haspin_kinase  17 sslkhktshssLqkfssssse.ssssnkislPvkdqvsrdkikkklrnsesllslnsqeev...kdfdevilsqilelc.....kikkilneadla 103
                    +   h++s s L+++++ +++ ++++n+ s+ v +q  +++ ++k +  + ll  +s+      + fd    ++ l+++        + l + +l 
     CCD24656.1 253 PVYTHRSS-SQLNRLTDDDTNnNNNNNNNSTTVTNQ-QQQQEDNKQQ-HQELLTNCSNPIWhhkTTFDVLGAHSELDISvydaaHDDMFLGQVRLR 345
                    33445544.899999554443033444555666666.3333333332.233333333322223333433333333333311000111223333333 PP

  Haspin_kinase 104 sllnd..................................................seklssevyqtkekdkevvlKviplevledvtiskelsl.. 147
                    +++++                                                  +++ +++vyq+k+kd++ ++ +  l   + v+++k   +  
     CCD24656.1 346 PKIHTtnyasqdqwhtlqsrvlnekvtgellikweytstkkrhygpndfevlrllGKGTFGQVYQVKKKDTQRIYAMKVL--SKKVIVKKN-EVdh 438
                    33333222222222334556666666666666666666666666777777777777777777777777666555432222..222332221.1111 PP

  Haspin_kinase 148 ..kelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeevklkswkqalsifwqivkiLyvaEt..kfeFEHRdLhldniL 239
                       e + l   + + +  +     +++  k  f++ ++l+lv  +  +G+   +++ +   +  +  + i++ + + E     +   RdL+ +niL
     CCD24656.1 439 tiGERNILVT-TAS-NASP-----FIVGLKFSFQTPTDLYLVTDFMSGGELFWHLQKEGRFTEDRAKFYIAELVLALEYlhDNDIVYRDLKPENIL 527
                    1022222222.222.2222.....233333566678899999999999999999966665555555555666666666511445779********* PP

  Haspin_kinase 240 vdknlnvtlidlklsRlessegk 262
                    +d+n+n+ l+d+ ls++  ++ +
     CCD24656.1 528 LDANGNIALCDFGLSKADLKDRT 550
                    ****************9844444 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.3    0.0027       4.5     247     311 ..     250     321 ..     191     327 .. 0.69
   2 ?    5.8   0.0    0.0029       4.8     314     390 ..     503     569 ..     500     588 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0027
  Pkinase_fungal 247 e.......lsskaevklkksesskkvekrsvdssvstskrsrlenrvhrrlvispvGkpiekaespkellea 311
                     +        ss++  +l++  ++++ ++++ +++v+++++++ +n+ ++  +++++ +pi++ ++  ++l a
      CCD24656.1 250 KkkpvythRSSSQLNRLTDDDTNNNNNNNNNSTTVTNQQQQQEDNKQQHQELLTNCSNPIWHHKTTFDVLGA 321
                     03334333444445556666666666666666666555555559999****************999888876 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0029
  Pkinase_fungal 314 DaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgee 390
                     + + +++ L+ +  i+ rD   +Nil+      ++ +  L D+ l k   +d+     ++  GT+e++a e+l +e+
      CCD24656.1 503 ELVLALEYLH-DNDIVYRDLKPENILLD-----ANGNIALCDFGLSKADLKDR----TNTFCGTTEYLAPELLLDES 569
                     56789999**.****************9.....67778888888887665432....24579999999999998644 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00041      0.67      19      56 ..     389     428 ..     385     458 .. 0.72
   2 ?    1.7   0.0       0.1   1.7e+02     178     212 ..     501     540 ..     491     542 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00041
        FTA2  19 saekdiefleyLgkglhsiVlkvkirgk..eYALKlFrfl 56 
                  +++d+e l +Lgkg+ ++V++vk ++   +YA+K+  + 
  CCD24656.1 389 YGPNDFEVLRLLGKGTFGQVYQVKKKDTqrIYAMKVLSKK 428
                 56789******************9987556*****97665 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.1
        FTA2 178 lpkllrdlkklhklgIvvrDlkeenyi...dg..kLvDls 212
                 + +l+  l+ lh   Iv rDlk+en++   +g   L+D++
  CCD24656.1 501 IAELVLALEYLHDNDIVYRDLKPENILldaNGniALCDFG 540
                 5677778999***************975443322467775 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4      0.52   8.5e+02      37      66 ..     276     305 ..     251     318 .. 0.71
   2 ?   12.0   0.0   6.6e-05      0.11     128     156 ..     504     532 ..     481     541 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.52
  YrbL-PhoP_reg  37 aarrrrkrllkqlqrekkykqilrElkeyv 66 
                    +++++   +  q q+++ +kq  +El  + 
     CCD24656.1 276 NNNNNSTTVTNQQQQQEDNKQQHQELLTNC 305
                    445555566677777777788888877655 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 6.6e-05
  YrbL-PhoP_reg 128 LdefleelldnhivtndlsakNivvkkns 156
                    L   le+l dn+iv++dl+++Ni++  n 
     CCD24656.1 504 LVLALEYLHDNDIVYRDLKPENILLDANG 532
                    444579******************98775 PP

>> Adeno_E3_15_3  Adenovirus 15.3kD protein in E3 region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.21      32     111 ..     397     479 ..     375     482 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
  Adeno_E3_15_3  32 lhqckrgifcvvkqaklt.yektttgnrlsyklptqrqklvlmvgekpitvtqhsaete..gclhfpyqgpedlctliktmcg 111
                    l+   +g f  v q k    ++  + + ls k+  +++++   +ge+ i vt  s  +     l+f +q p dl  +   m g
     CCD24656.1 397 LRLLGKGTFGQVYQVKKKdTQRIYAMKVLSKKVIVKKNEVDHTIGERNILVTTASNASPfiVGLKFSFQTPTDLYLVTDFMSG 479
                    55566888998888876514566677889***********************998776522579**********988887776 PP

>> eIF3_p135  Translation initiation factor eIF3 subunit 135
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3       1.7   2.7e+03      91      91 ..      70      70 ..       3     128 .. 0.54
   2 ?   12.8   0.9   5.4e-05     0.088      77     159 ..     260     398 ..     244     413 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.7
   eIF3_p135 91 k 91
                +
  CCD24656.1 70 E 70
                2 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 5.4e-05
   eIF3_p135  77 shflnClLgseenskpkvsidellkklykkkkkkknkkk..........................................................es 117
                 s  ln l   ++n+++++++++++ ++++ +++++nk++                                                          + 
  CCD24656.1 260 SSQLNRLTDDDTNNNNNNNNNSTTVTNQQ-QQQEDNKQQhqelltncsnpiwhhkttfdvlgahseldisvydaahddmflgqvrlrpkihttnyasQD 357
                 55677777777666644444444333322.233333333457999***************************************************99* PP

   eIF3_p135 118 ewtkltpeslweqiekevkarfryeleedsieeelkkislLR 159
                 +w++l+++ l e+++ e+  +++y+ +++    + + +++LR
  CCD24656.1 358 QWHTLQSRVLNEKVTGELLIKWEYTSTKKRHY-GPNDFEVLR 398
                 *************************9888776.666777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2116  (0.118021); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.89u 0.28s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 5335.61
//
Query:       CCD24657.1  [L=597]
Description: hypothetical protein NDAI_0D03430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-31  107.0   1.5    1.3e-30  105.8   1.5    1.7  1  HSF_DNA-bind  HSF-type DNA-binding
    4.4e-28   97.7   0.6    9.2e-28   96.7   0.6    1.6  1  Response_reg  Response regulator receiver domain
  ------ inclusion threshold ------
      0.018   14.8   0.2      0.018   14.8   0.2    2.0  2  SHE3          SWI5-dependent HO expression protein 3
      0.062   13.2   1.4          6    6.7   0.1    2.5  2  GyrB_insert   DNA gyrase B subunit insert domain


Domain annotation for each model (and alignments):
>> HSF_DNA-bind  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   1.5   2.9e-34   1.3e-30       1      96 []      83     184 ..      83     184 .. 0.94

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 2.9e-34
                   HHHHHHHHHCT...TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSB...TTB--TTSEEEEESS--XXXXXXXX CS
  HSF_DNA-bind   1 FlkkLyklled...eelisWsedgksfvvkdkeefakevlpkyfkhsnfssFvrqLnlYgFrkvkrkee...kkkkkskvweFshenFkrgkpelLk 91 
                   F++kLyk+le+    +l++W+++g+sfvv d+ +f++++lp++fkhsnfssFvrqLn Y+F+kvkrk++   +kk  + +weF+h++Fkr++++ L+
    CCD24657.1  83 FVRKLYKILETntfPNLVRWTPEGTSFVVLDTGKFTTQILPTHFKHSNFSSFVRQLNKYDFHKVKRKSDepgRKKYGELSWEFTHPSFKRHDEAGLE 179
                   9********98667788**********************************************998887888888888999**************** PP

                   XXXXX CS
  HSF_DNA-bind  92 kikrk 96 
                   +ikrk
    CCD24657.1 180 NIKRK 184
                   ****7 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.6     2e-31   9.2e-28       1     111 [.     426     535 ..     426     536 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 2e-31
                   EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHESEEEEESSCSSSEHHHHHHHHHHCTTTSEEEEEESSTSHHHHHHHHHCTESEE CS
  Response_reg   1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeekvdlillDinmpgmdGlellkeireedpelpviiltahseeedavealkagaddf 97 
                   vl+v+Dd + ++l++++l+++g+ +v++++dg +a+ +l++ ++dl+l+Di mp++dG ++++ ir+ d+e+p+i++t++ e++d++ +l+ g+ d+
    CCD24657.1 426 VLLVEDDAVSIQLCSKFLRKSGC-TVEVVTDGLAAISILEAFRYDLVLMDIVMPNLDGATATSIIRNFDKETPIIAMTGNIEDQDLITYLQHGMTDI 521
                   89*********************.************************************************************************* PP

                   EESSG-HHHHHHHH CS
  Response_reg  98 lsKpfdpeeLlkal 111
                   l+Kpf++++Ll++l
    CCD24657.1 522 LAKPFTRDDLLSML 535
                   **********9876 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4       1.3   5.9e+03      29      42 ..      28      42 ..      14      49 .. 0.40
   2 ?   14.8   0.2     4e-06     0.018      79     138 ..     213     272 ..     205     286 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.3
                HHHHH.HHHHHHHHH CS
        SHE3 29 Llekl.elaqkkesk 42
                 ++++ +  q+++sk
  CCD24657.1 28 NTDQMsQEDQERQSK 42
                221110112222222 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4e-06
                 HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SHE3  79 kesveelklekkqlkkrlenssaseteleeelerlkvqYdalvdsqkeYkehYqqeieeL 138
                 k ++++lk + ++++  +++   + t++++el rl + Y++lv+s   +k   ++ +++ 
  CCD24657.1 213 KMQFDKLKSDFENMERTMNDMMTKYTRTQDELTRLTNRYNTLVESLFTFKTVNENVVNNF 272
                 6799*****************************************999998777666665 PP

>> GyrB_insert  DNA gyrase B subunit insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0013         6      16      59 ..     229     271 ..     226     286 .. 0.82
   2 ?    5.0   0.2    0.0045        20      36      77 ..     289     330 ..     278     364 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0013
  GyrB_insert  16 aLeeLvrqyrkaeaiIkRlsrrydeevLeallelpeldeedled 59 
                  ++++++++y ++++ ++Rl++ry++ ++e+l ++++++e+ +++
   CCD24657.1 229 TMNDMMTKYTRTQDELTRLTNRYNT-LVESLFTFKTVNENVVNN 271
                  67899******************86.568999999998776665 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0045
  GyrB_insert  36 rrydeevLeallelpeldeedledeaaaeawakalearlnqe 77 
                   +yd++ L++l+++ +l++++l+ +++++  a ++++ l +e
   CCD24657.1 289 SLYDSNKLNQLATYNPLQQQQLARSSSLSLNAPSIQSILARE 330
                  68**************************99999999999543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1312  (0.0731775); expected 358.6 (0.02)
Passed bias filter:                      645  (0.0359752); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 4268.53
//
Query:       CCD24658.1  [L=566]
Description: hypothetical protein NDAI_0D03440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-15   57.2   0.8    3.2e-14   53.7   0.8    2.5  1  SET             SET domain
      0.007   16.6   2.2        1.9    8.8   0.2    2.7  2  Myticin-prepro  Myticin pre-proprotein from the mussel
  ------ inclusion threshold ------
      0.096   12.8   0.5       0.21   11.8   0.5    1.5  1  LepA_C          GTP-binding protein LepA C-terminus
        3.4    7.8   8.2       0.14   12.2   1.6    2.1  2  DZR             Double zinc ribbon


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.8   7.2e-18   3.2e-14       1     168 [.     132     430 ..     132     431 .. 0.55

  Alignments for each domain:
  == domain 1  score: 53.7 bits;  conditional E-value: 7.2e-18
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH............................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................................... RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele............................................................... 36 
                 Gr+++At++I+++ +i++  + +++t  ++dk +l                                                                
  CCD24658.1 132 GRCLIATDHIEANKLIFQE-PTPLITIPPMDKLGLIergkicshcgntlhslsthfimmngldcdscgtiwcskkcklanshihsilkhqksgkkkmmn 229
                 9***************644.4568888888888888999999999988877777776666666666666666666666666666666666665555556 PP

                 ........................................................................................HTEEEEEXGGX CS
                 ........................................................................................xxxxxxxxxxx RF
         SET  37 ........................................................................................aylfslpeapk 47 
                                                                                                                    
  CCD24658.1 230 nnnvavdskawnefeklcikfnqrdifsvgfiwativsmekpdlkseletkwnslcslsqrirsnaadstniggtfdksnggggtsagT---------- 318
                 66555555555555555555555555555555555555555544444444443333333222222222222222221111111111111.......... PP

                 XGGSXHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSXXXHCCCCCHCCCHEEEETEEEEEECCC........................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
         SET  48 nlaftkelakasastllqklakdqkqaekedtdaalkasskaesdlnaskpeagafsaiagysidaralksgnga........................ 122
                            ++ ++ +k ++++++ +                                                                       
  CCD24658.1 319 ------VIDTRDTINETEKVKSREEEHK----------------------------------------------Nedmehiwksafklfqsalpkvgdt 365
                 ......1111112222222222222222..............................................0223333333333333333333333 PP

                 ......................GTTGGGCEEXSSSSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXT CS
                 ......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 123 ......................gplarflNHsCdpNcnltvqnvlrgprvavfAtrdIkkGeEltidY 168
                                       + l +flNH+C+pN+ +++++     ++ +f++++I+kGe+l+ +Y
  CCD24658.1 366 idfeqflceigrfnlnqiegqiYYLNSFLNHNCEPNVRFEIDS---KLCLKIFSRKPINKGEQLFTTY 430
                 34444444444444444455555555***********999998...*********************9 PP

>> Myticin-prepro  Myticin pre-proprotein from the mussel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1     0.002       8.8      17      41 ..     189     213 ..     181     242 .. 0.78
   2 !    8.8   0.2   0.00043       1.9      48      91 ..     447     492 ..     441     496 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.002
  Myticin-prepro  17 vqeaeavsCasryCkkfCrsarCty 41 
                      +  +  sC + +C+k+C+ a+ + 
      CCD24658.1 189 MNGLDCDSCGTIWCSKKCKLANSHI 213
                     44455667**********9887654 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00043
  Myticin-prepro  48 hkgklCkClrCsreesplavs.qkaksvneg.eldmtpkmnemenl 91 
                     + g +CkC rC +e    + s q+ ++++++  +d++++m++ e+l
      CCD24658.1 447 NYGIFCKCNRCENEFLKSKQSrQDNNNIDNRiLSDTPAIMKSPERL 492
                     56789******998744443314444555557789999****9987 PP

>> LepA_C  GTP-binding protein LepA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.5   4.7e-05      0.21      77     104 ..     215     242 ..     204     245 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.7e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      LepA_C  77 Kllekqkegkkrlkkignveipqeafla 104
                   l++qk gkk++ + +nv ++++a+ +
  CCD24658.1 215 SILKHQKSGKKKMMNNNNVAVDSKAWNE 242
                 579********************99876 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.6   3.1e-05      0.14      12      44 ..     169     208 ..     165     211 .. 0.87
   2 ?   -2.7   0.6       1.5   6.6e+03      31      36 ..     454     459 ..     450     467 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.1e-05
         DZR  12 arfCseCgtklkavaa......edrCpsCgek.vdpearf 44 
                  + Cs+Cg++l + ++         C+sCg+  ++++++ 
  CCD24658.1 169 GKICSHCGNTLHSLSThfimmnGLDCDSCGTIwCSKKCKL 208
                 589********988889***9999*******999999876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.5
         DZR  31 CpsCge 36 
                 C +C+ 
  CCD24658.1 454 CNRCEN 459
                 444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3992.76
//
Query:       CCD24659.1  [L=292]
Description: hypothetical protein NDAI_0D03450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   14.0   0.0       0.11   12.9   0.0    1.6  1  4HBT      Thioesterase superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.9e-06      0.11       3      76 ..     206     279 ..     206     282 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.9e-06
                 SB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTC.EEEEEEEEEEEESSEEEEEEEEEETTSC CS
        4HBT   3 vvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgd.eltvearvlrlgrtsavvevevrdedgr 76 
                 +vhgG +++ ++  + + +  +  +  +  + el+i ++ p    + +++ +++v  +g+ s+ ++v++ d++g+
  CCD24659.1 206 IVHGGILATVMEDLMREGIQIIKQK-NGEKTNELTISYKMPTFANQfVIVRTTQVDDIGKDSVNMKVDLMDQNGQ 279
                 79**********************8.999************9999955555789*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2256.12
//
Query:       CCD24660.1  [L=259]
Description: hypothetical protein NDAI_0D03460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-29  102.6   0.0    4.6e-29  101.6   0.0    1.5  1  5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family


Domain annotation for each model (and alignments):
>> 5-FTHF_cyc-lig  5-formyltetrahydrofolate cyclo-ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   2.6e-33   4.6e-29       1     186 [.      19     248 ..      19     249 .. 0.85

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 2.6e-33
                     HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHTSHHHHH-SEEEE----.TTS---HHHHHHHHHTTEEEEEEEECSSC................ CS
  5-FTHF_cyc-lig   1 KqelRkqllaalralseeevaaesealsqrieslkesqeakrvalyvsv.kgeidtkelikklleegkevllPrvrles................ 78 
                     Kq+lRkq+   l+++s+ +v  +s  ++  +  + +    + +a+++s+   e++t+ +ik ++e+gk+++lPr++++                 
      CCD24660.1  19 KQALRKQFNVSLSQVSKTSVDIQSAIIVDSLAPILKPY--HSIACFMSMdHSEVNTQGIIKWIFEQGKSLYLPRCTNTRdthqvklrtqtkdltk 111
                     89**********************99888777665554..99*******889*************************999*************** PP

                     .....TEECEEEEEECCCCCCCCCHCTSSCE--TTECCBCGGG..........G-SEEEE--SEE....ETTS-EE-SSTTHHHHHHHHHTS.T- CS
  5-FTHF_cyc-lig  79 .....gslkvvrlttlkeedslesgkyglkePeeeeerelale..........kldlvlvPgvAf....dkeGaRlGkGkGyyDrflarlkg.ga 153
                          ++ k+++++++ +    ++gky+l eP +e+  +++++          +ld++lvP+v f    dk GaRlG+G+G+yD+f++r+++  +
      CCD24660.1 112 dhphlTFHKMKSYEEVLN--LQPQGKYKLREPMPENVSSSSSSasasalylppQLDVILVPSVIFgingDKPGARLGHGAGFYDDFFKRYQYyNP 204
                     996666666655444444..446889*******9999988877899****************9886666899********************855 PP

                     .SS--EEEEE--GGGEES..........-----ST----SEEE- CS
  5-FTHF_cyc-lig 154 .gdkpltvglaldeqlve..........rlPleehDvpvdevvt 186
                       + pl++g+ l+eq+++          ++P+++hD+ +d++v 
      CCD24660.1 205 dKKMPLLIGIGLKEQIIDnnatssstnvQIPIDDHDYFMDCIVS 248
                     1566899*********9643333333456*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2037.21
//
Query:       CCD24661.1  [L=399]
Description: hypothetical protein NDAI_0D03470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-34  120.1   0.0    1.6e-34  119.7   0.0    1.1  1  Aminotran_4  Amino-transferase class IV


Domain annotation for each model (and alignments):
>> Aminotran_4  Amino-transferase class IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   8.9e-39   1.6e-34       2     223 .]      98     350 ..      97     350 .. 0.94

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 8.9e-39
  Aminotran_4   2 lfEtmrvy...ngei..ffldeHleRLrksaellglelpfdeeelrkileelleannsen.......grlrllvsrgggglgaatsepsvavyvsalp 87 
                  lfE++++y   +++i  f+ d +++R++ksa+++   ++f+ eel k++ +l+e+++  +       +++r++++++ + lg  ++ ++++++v+++p
   CCD24661.1  98 LFEGLKAYrtpDNKItmFRPDMNMARMNKSAARI-CLPTFQSEELVKLMGKLIEQDKHLVpqgqgysLYIRPTLIGTTAALG-VSTPDKALLFVICSP 193
                  8**********99999788************555.5**********************99****88888*************.99999********** PP

  Aminotran_4  88 pgpeseke.....lplvtssdvrrdapsplpgaKtlnyldnvlarreakergadevl.lvdedgnvtEgstsNv.fivk.....ggelitPplssgiL 173
                   gp++++      l++++++ +r+++  +  +    ny++++l +++a+erg+++ l l+ ++ n+tE++t+Nv f+++      +el+t+pl+++iL
   CCD24661.1 194 VGPYYKTGfkavrLEATDYA-TRAWPGGVGDKKLGANYAPCILPQLQAAERGYQQNLwLFGPEKNITEVGTMNVfFVFQnkatgKKELVTAPLDGTIL 290
                  ***********866666555.*********************************8888****************666679999999************ PP

  Aminotran_4 174 pGitrrallelakal....gleveereitlkdle......eadeafltntlrgvlpvrsi 223
                  +G+tr+++l+la+++     +ev er ++++++       e  eaf ++t++ v p+++i
   CCD24661.1 291 EGVTRDSVLALAREKldpnEWEVNERYYSITEVAekaqkgELLEAFGSGTAAVVSPIKEI 350
                  **************99*9999*************999999999***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 3271.14
//
Query:       CCD24662.1  [L=708]
Description: hypothetical protein NDAI_0D03480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-07   30.8   5.1    1.5e-07   30.8   5.1    1.9  2  Fungal_trans  Fungal specific transcription factor domain
    2.9e-06   27.3   7.6    6.4e-06   26.2   7.6    1.6  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   5.1   1.7e-11   1.5e-07       1     249 [.     169     464 ..     169     477 .. 0.73
   2 ?   -1.6   0.3      0.12   1.1e+03     209     256 ..     571     640 ..     536     665 .. 0.59

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.7e-11
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpkt....ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwi 93 
                   +d++f+ +hp +p+l++  +  k     +s +s+   + s+lll++ +   +++s  ++++           +++++++++ l+  + ++ ++ l++
    CCD24662.1 169 IDTYFETIHPIIPVLDRSLVRQKLigiyNSIQSGTDLSISNLLLIMSIFFCSSYSIVASSIIPDL-----LLCNKYYQSHKYLLELSVFPTRPTLES 260
                   789**************988888888885555555555555555555555555555555554222.....2456788999999999999******** PP

  Fungal_trans  94 lqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddd 190
                   lqs+l++++      +   +  ++ + vr+a++lg  ++    ++k+  + +eee + ++ lw +  y++   ++++G p++  +++ + p+ +   
    CCD24662.1 261 LQSFLIVNFIQDPNMT--EAIGYSVMLVRIAQQLGVEKKLMEHSTKQEDNIQEEEYQHLKLLWSYLLYIEGSASVVYGLPFMSEKFNPDWPMEKIPT 355
                   ********98877665..4444777777777777777777777777778899999999***********************7788888888777777 PP

  Fungal_trans 191 dlwesddaseetlvetk...............lsneeksrkiasfllaLkkilsk..........................iagsllsiekqlqqrd 246
                    l++   + ++ ++ ++                +++ek r  +  + +L++ ls+                          ++g l+s +++ + +d
    CCD24662.1 356 CLESIPLEFTIGRLIINaafydimehkkyvemKEDHEKLRCVYAKIERLNNQLSGrnfphsnyfintlkvflyrlylkyfgLLG-LYSAGSKNNDND 451
                   777777777777777777777766666776665555666666666666665555577777777777777777778888888888.888888888888 PP

  Fungal_trans 247 lq..........s 249
                   ++          +
    CCD24662.1 452 NDkrkncaqqqqQ 464
                   8866555544433 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.12
  Fungal_trans 209 sneeksrkiasfllaLkkilsk..................iagsllsiekqlqqrdlq..........seklswve 256
                    +  +   +++ +l+L+ +++k                  i+++++s +  l+ + ++                 +
    CCD24662.1 571 RYLLIEQAMNLLELKLAPLWKKddiykfmlvrtvkekvweIHSNFISSNESLRDELNSstifiesrqnI------K 640
                   455556666666677777777777777777777777777766666666666666666655553333222......2 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   7.6   7.2e-10   6.4e-06       1      33 [.      19      51 ..      19      55 .. 0.93

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 7.2e-10
                SS-HHHHHCT---STSSSS-HHHHHCT..HHHCCC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkkln..leCtfy 33
                ++C+ C  +K KC+++kP Cs+C+ ++   eC  y
  CCD24662.1 19 KSCKYCYTHKLKCNKEKP-CSKCIAVGliDECI-Y 51
                59****************.********999998.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 5180.45
//
Query:       CCD24663.1  [L=433]
Description: hypothetical protein NDAI_0D03490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.1e-12   46.4   0.6       0.01   16.7   0.0    4.9  5  WD40          WD domain, G-beta repeat
    0.00031   21.0   0.0        3.9    7.8   0.0    4.2  4  ANAPC4_WD40   Anaphase-promoting complex subunit 4 WD40 domai
     0.0086   15.9   0.8       0.12   12.2   0.0    2.6  3  DUF4738       Domain of unknown function (DUF4738)
  ------ inclusion threshold ------
      0.062   13.4   0.3       0.13   12.4   0.3    1.6  1  F5_F8_type_C  F5/8 type C domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.9e-05      0.13       9      38 .]     162     192 ..     153     192 .. 0.87
   2 !   16.7   0.0   2.3e-06      0.01       2      37 ..     197     233 ..     196     234 .. 0.74
   3 !   10.7   0.0   0.00018       0.8      17      38 .]     322     344 ..     276     344 .. 0.76
   4 ?   -1.0   0.0      0.86   3.8e+03      13      34 ..     363     383 ..     358     385 .. 0.62
   5 ?   -3.0   0.0       3.8   1.7e+04      13      26 ..     409     422 ..     401     425 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.9e-05
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +H + ++ l+  p+g  l+s+s D  ++iW+
  CCD24663.1 162 AHfDEISNLKIFPSGEVLLSASIDMQLKIWS 192
                 89556*************************5 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.3e-06
                 EEEEEEESSSS.EEEEE.EETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGHss.vtsla.fspdgawlasGsdDgtvriW 37 
                 ++ rt+ GH++ vt+     +  ++l s+s+Dg++r+W
  CCD24663.1 197 SNPRTFLGHKGkVTDTVlIERGRNFL-SSSRDGSIRLW 233
                 5678999**555*8665366666776.7899******* PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00018
                 E.EETTSSEEEEEETTSEEEEEE CS
        WD40  17 a.fspdgawlasGsdDgtvriWd 38 
                   +++d++++ +G ++g++ iWd
  CCD24663.1 322 IvNPQDNNYVYAGYENGSILIWD 344
                 267899****************9 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.86
                 EEEEEEETTSSEEEEEETTSEE CS
        WD40  13 vtslafspdgawlasGsdDgtv 34 
                 +++l++ +++  ++sG+ D ++
  CCD24663.1 363 INALKYYDNKLAISSGT-DTSL 383
                 56665444444466666.9887 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 3.8
                 EEEEEEETTSSEEE CS
        WD40  13 vtslafspdgawla 26 
                 vts+a+++ + +++
  CCD24663.1 409 VTSFATDSKKIYIV 422
                 88888888777765 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0061        27      34      72 ..     160     198 ..     137     211 .. 0.81
   2 !    7.8   0.0   0.00087       3.9      37      82 ..     205     250 ..     190     262 .. 0.82
   3 ?    2.0   0.0     0.058   2.6e+02      42      76 ..     276     310 ..     266     318 .. 0.88
   4 ?    0.8   0.0      0.13     6e+02      49      87 ..     327     366 ..     319     371 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0061
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  +d++  e+++L+  p+g++L  a  d ++++ + ++g  
   CCD24663.1 160 DDAHFDEISNLKIFPSGEVLLSASIDMQLKIWSLKDGSN 198
                  5667789**************************999975 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00087
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                  ++++v++    + g+ +  +  dg++rl + ++g+++++++ k++ 
   CCD24663.1 205 HKGKVTDTVLIERGRNFLSSSRDGSIRLWECSTGTTIRTFTRKENP 250
                  5677777777889999999********************9987664 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.058
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  +sL +  +gk    +++ g + l+d+ +++ + ++
   CCD24663.1 276 NSLDFGTKGKTVISSHKSGVLTLHDVFTKESLLQM 310
                  5899999*******************999987766 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.13
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkv.vhslsvksekavtcl 87 
                  d++    +y++g++ + d+ s +v ++++ +++  a++ l
   CCD24663.1 327 DNNYVYAGYENGSILIWDIRSNTVpLEEVVINKGIAINAL 366
                  66777899**********9988763555555555555555 PP

>> DUF4738  Domain of unknown function (DUF4738)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.3      0.16   7.4e+02      35      80 ..     113     155 ..     106     166 .. 0.80
   2 ?   -0.4   0.0      0.21   9.4e+02      58      85 ..     157     184 ..     142     187 .. 0.77
   3 !   12.2   0.0   2.6e-05      0.12      50      97 ..     353     401 ..     345     407 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.16
     DUF4738  35 YhlyvqvnrtadkvlktvyneegvevdnkYyDNiihlsvyrggkkl 80 
                 Y+     n ++ +++ +++n+    v+    DN+ ++sv+ +  +l
  CCD24663.1 113 YQ-PSILNNKTFTSIDVIQNNSA--VKFAVGDNVGNISVFDDTMNL 155
                 55.45678888899999998888..777788999999999997665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.21
     DUF4738  58 vevdnkYyDNiihlsvyrggkklfskdf 85 
                  ++d+  +D i +l+++  g+ l+s  +
  CCD24663.1 157 CQLDDAHFDEISNLKIFPSGEVLLSASI 184
                 4789999999999999999998888765 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 2.6e-05
     DUF4738  50 ktvyneegvevdn.kYyDNiihlsvyrggkklfskdftKkdFaslvpae 97 
                 + v+ ++g++++  kYyDN+  +s   + + l++ d + ++F++++p+ 
  CCD24663.1 353 EEVVINKGIAINAlKYYDNKLAISSGTDTSLLLDLDSSGSQFQNYIPTF 401
                 566667888887549*******************************975 PP

>> F5_F8_type_C  F5/8 type C domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   2.9e-05      0.13      62      99 ..      54      88 ..      39     134 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
                  EEEEEEEEEESSSSSEEEEEEECEEESSSSSSSEEEEE CS
  F5_F8_type_C 62 yvksykiqvsddgetWttvkdekvpgnsdnstpvtntf 99
                   vk+y+i+vs+ g+ +++v+d    +n+ n+++++ ++
    CCD24663.1 54 EVKEYRIRVSNKGTRFQPVHD---RQNTFNHSSQNGRL 88
                  79*******************...44444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 3369.59
//
Query:       CCD24664.1  [L=279]
Description: hypothetical protein NDAI_0D03500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0008   19.4   0.6     0.0061   16.6   0.1    2.4  3  DUF1664       Protein of unknown function (DUF1664)
     0.0024   18.1   5.5      0.099   12.8   0.2    3.1  3  COG5          Golgi transport complex subunit 5
      0.003   18.1   9.7       0.21   12.2   0.2    3.4  3  Syntaxin-6_N  Syntaxin 6, N-terminal
  ------ inclusion threshold ------
      0.016   15.0   0.2      0.048   13.4   0.2    1.8  1  SKA2          Spindle and kinetochore-associated protein 2
       0.04   14.1   4.0       0.25   11.6   0.2    2.9  3  TMF_TATA_bd   TATA element modulatory factor 1 TATA binding
      0.043   13.9   1.4      0.085   12.9   0.1    2.1  3  TPR_MLP1_2    TPR/MLP1/MLP2-like protein
      0.066   13.5   2.6        2.4    8.5   0.0    3.2  3  ABC_tran_CTD  ABC transporter C-terminal domain
      0.093   13.1   0.1      0.093   13.1   0.1    2.7  3  CLZ           C-terminal leucine zipper domain of cyclic nucl
       0.14   12.1   5.6       0.17   11.8   1.1    2.6  3  Sec34         Sec34-like family
       0.25   11.4  13.6       0.12   12.4   4.4    3.0  2  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
       0.26   11.2   6.9       0.13   12.2   1.6    2.7  3  Takusan       Takusan
       0.48    9.5   8.4        0.6    9.2   6.6    2.0  1  APG17         Autophagy protein Apg17
        1.2    9.3   6.9        2.2    8.4   0.7    2.8  2  Swi5          Swi5
        3.2    6.6   4.9          4    6.2   4.9    1.4  1  LMBR1         LMBR1-like membrane protein
        5.2    7.2   9.0       0.66   10.1   0.9    3.0  3  DASH_Dad3     DASH complex subunit Dad3


Domain annotation for each model (and alignments):
>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.6   6.7e+03      63      77 ..      64      78 ..      45      86 .. 0.55
   2 !   16.6   0.1   5.1e-06    0.0061      48     115 ..     105     172 ..     100     179 .. 0.93
   3 ?    0.1   0.0      0.64   7.7e+02      54      73 ..     219     238 ..     193     263 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.6
     DUF1664 63 hLssridrvdkklde 77
                 L++++++  + l++
  CCD24664.1 64 YLTKELETTIWDLEK 78
                344444444444444 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 5.1e-06
     DUF1664  48 kqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegles 115
                 ++le   ++l ++ r L+ ++d+vd+kld+ +   ++ ++++++  ++l++i++ +++v +++++l+ 
  CCD24664.1 105 SKLEYYIDTLGSAVRGLETDMDKVDSKLDALNSNYEKNSNNLMQKLKGLETIKSRLNNVLQTFNELKI 172
                 578999999****************************************************9999875 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.64
     DUF1664  54 seslaatkrhLssridrvdk 73 
                 se+ ++  ++L +rid++++
  CCD24664.1 219 SEKSNEINDELLKRIDQLND 238
                 34455667788888888876 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0076       9.1       1      54 [.      19      74 ..      19      83 .. 0.83
   2 !   12.8   0.2   8.3e-05     0.099      74     117 ..     125     168 ..     116     176 .. 0.90
   3 ?   -0.5   0.1       1.1   1.3e+03      62      85 ..     214     237 ..     175     242 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0076
                XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  1 eaFLepdFdpksfanallk..atnnnddteldlstplkrlnydiqeldkrlrqlit 54
                e F ++ F p+++    ++  ++n+ ++ +   s+ l+rl + ++ l+k+l++ i 
  CCD24664.1 19 EMFFDEGFVPQAYIDIFIStlNANKPNQIQTASSALLARLDFYTKYLTKELETTIW 74
                56999**********9999555666666667777889***************9885 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 8.3e-05
                 XXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHHHHHHHH CS
        COG5  74 lselksslesLsasyerlkskvlepyeeaeklqsalkrlhqtld 117
                 +++++s+l++L++ ye+ +++++++ + +e+ +s+l+++ qt +
  CCD24664.1 125 MDKVDSKLDALNSNYEKNSNNLMQKLKGLETIKSRLNNVLQTFN 168
                 57899************************************986 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.1
                 XXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  62 ehlskskslssvlselksslesLs 85 
                 ++  +s++ +++++el +++++L+
  CCD24664.1 214 NESLDSEKSNEINDELLKRIDQLN 237
                 333344445555555555555555 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2   0.00018      0.21      28      66 ..      48      85 ..      37     108 .. 0.69
   2 ?    6.4   0.0     0.011        13      20      74 ..      87     142 ..      84     163 .. 0.78
   3 ?    4.2   2.9     0.052        62       8      82 ..     154     230 ..     149     239 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00018
  Syntaxin-6_N 28 ledtssstseeldetrteLrkalrsiewdledLeetvri 66
                  ++ +s +    ld  ++ L k+l++  wdle L e+  +
    CCD24664.1 48 QTASS-ALLARLDFYTKYLTKELETTIWDLEKLSEALPA 85
                  44433.357889999********************9833 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.011
  Syntaxin-6_N  20 lyrrwerlledtss.stseeldetrteLrkalrsiewdledLeetvriveknpskf 74 
                   l ++w  + +  ++    ++l+   + L +a+r +e+d++  +   +++++n +k 
    CCD24664.1  87 LSSNWPAIEDHDPTsFGASKLEYYIDTLGSAVRGLETDMDKVDSKLDALNSNYEKN 142
                   6788877777777744799999999*********************9999986663 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.052
  Syntaxin-6_N   8 eeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvrivek....npskfkidekels 82 
                   e +++ ln++ +++++ + +l+ +s++ +++  + r+   ++l++    l+ Le+t+ i       + +k +  ++el 
    CCD24664.1 154 ETIKSRLNNVLQTFNELKIILDISSDE-KDKDVNRRKIATTSLDDFTISLRTLEDTI-ISALneslDSEKSNEINDELL 230
                   568899999999999999999887764.566666667777899*************9.333311223345444444544 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2     4e-05     0.048       6      64 ..     113     170 ..     108     172 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4e-05
        SKA2   6 klealFqkaesdLdyvqhrLekefqqsypdnaeNpvkLlerlkkvkeelqaLkeqceel 64 
                  l +     e+d+d v+++L+  ++ +y++n +N+++ l+ l+ +k++l+++ + ++el
  CCD24664.1 113 TLGSAVRGLETDMDKVDSKLDA-LNSNYEKNSNNLMQKLKGLETIKSRLNNVLQTFNEL 170
                 555556666899********96.899999999*******************99999887 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.9   2.3e+03       9      40 ..      50      81 ..      43      86 .. 0.70
   2 ?   11.6   0.2   0.00021      0.25      14      72 ..     111     169 ..     101     175 .. 0.82
   3 ?    2.2   0.3      0.17     2e+02      35      77 ..     195     237 ..     181     240 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.9
  TMF_TATA_bd  9 psvqlverlsseirrlEgElaslkeelerlea 40
                 +s+ l+ rl    + l  El+++ ++le+l++
   CCD24664.1 50 ASSALLARLDFYTKYLTKELETTIWDLEKLSE 81
                 56666777777777777777777777777765 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00021
  TMF_TATA_bd  14 verlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleeleke 72 
                  ++ l+s++r lE+++ ++ ++l  l+++ ++ ++ +++ +k  e+ k+  +++ ++ +e
   CCD24664.1 111 IDTLGSAVRGLETDMDKVDSKLDALNSNYEKNSNNLMQKLKGLETIKSRLNNVLQTFNE 169
                  7899***********************99999999888888888877766666555444 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.17
  TMF_TATA_bd  35 lerleaerdeareeivklmkeneelkelkkeleelekeleelq 77 
                  l  ++ + +++++ i++ ++e+ + +++++ ++el k++++l+
   CCD24664.1 195 LDDFTISLRTLEDTIISALNESLDSEKSNEINDELLKRIDQLN 237
                  5555666677888888888888888888888888888888776 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       9.8   1.2e+04      68      80 ..      68      80 ..      62      89 .. 0.46
   2 ?   12.9   0.1   7.1e-05     0.085      18      78 ..     112     172 ..     104     187 .. 0.88
   3 ?   -1.5   0.0       2.1   2.5e+03      77      98 ..     206     227 ..     181     238 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9.8
  TPR_MLP1_2 68 elkaeiaelkaea 80
                el+++i +l++  
  CCD24664.1 68 ELETTIWDLEKLS 80
                2333333333333 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 7.1e-05
  TPR_MLP1_2  18 eeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelka 78 
                 + + ++++ l++d+ k  + + + + +Ye+  ++  + +k l++++++ln++ ++ +elk 
  CCD24664.1 112 DTLGSAVRGLETDMDKVDSKLDALNSNYEKNSNNLMQKLKGLETIKSRLNNVLQTFNELKI 172
                 56667888999**********************************************9986 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.1
  TPR_MLP1_2  77 kaeaesakaeleeseesweeqk 98 
                 ++   sa +e   se+s e   
  CCD24664.1 206 EDTIISALNESLDSEKSNEIND 227
                 4444444444444444444333 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1      0.09   1.1e+02       9      33 ..      65      89 ..      46      97 .. 0.73
   2 ?    8.5   0.0     0.002       2.4      13      67 ..     121     170 ..     105     171 .. 0.64
   3 ?   -0.6   0.1       1.4   1.6e+03      39      57 ..     218     236 ..     203     240 .. 0.52

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.09
  ABC_tran_CTD  9 eleeleaeIeaLEeeiaeleaelad 33
                    +ele +I  LE+  ++l a l++
    CCD24664.1 65 LTKELETTIWDLEKLSEALPATLSS 89
                  4467888888888888888777775 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.002
  ABC_tran_CTD  13 leaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelyerWeeL 67 
                   le ++++ + ++ +l+   +++     ++ l++  + le++++ L++ ++ + eL
    CCD24664.1 121 LETDMDKVDSKLDALNSNYEKN-----SNNLMQKLKGLETIKSRLNNVLQTFNEL 170
                   4455555555555555444433.....3557777788999999999999888887 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.4
  ABC_tran_CTD  39 dpeklaelsaeleeleaeL 57 
                   d+ek +e++ el +  ++L
    CCD24664.1 218 DSEKSNEINDELLKRIDQL 236
                   3344444444443333333 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.8   6.9e+03      62      62 ..      66      66 ..      45      83 .. 0.53
   2 ?   13.1   0.1   7.8e-05     0.093      29      70 ..     114     155 ..     105     156 .. 0.92
   3 ?   -1.1   0.3       2.1   2.5e+03      56      67 ..     224     235 ..     179     239 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.8
         CLZ 62 k 62
                +
  CCD24664.1 66 T 66
                2 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 7.8e-05
         CLZ  29 leekverLessLeaLqtrlarLlaeyessqrkLkqRitkLEk 70 
                 l + v+ Le+ ++  + +l  L ++ye+  + L+q+++ LE+
  CCD24664.1 114 LGSAVRGLETDMDKVDSKLDALNSNYEKNSNNLMQKLKGLET 155
                 6678999********************************995 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.1
         CLZ  56 ssqrkLkqRitk 67 
                 + + +L +Ri +
  CCD24664.1 224 EINDELLKRIDQ 235
                 223334444444 PP

>> Sec34  Sec34-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.9   5.8e+03     104     106 ..      61      63 ..      38      82 .. 0.56
   2 ?   11.8   1.1   0.00014      0.17      20      77 ..     112     173 ..     104     210 .. 0.78
   3 ?    1.9   0.0      0.16   1.9e+02       8      56 ..     222     269 ..     215     279 .] 0.65

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.9
       Sec34 104 cle 106
                   +
  CCD24664.1  61 YTK 63 
                 222 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00014
       Sec34  20 dealeqLeeleekfksvsektsslh....eaceqlleeqkrleelaeeieekLkyFeeldpi 77 
                 d++ + ++ le+++++v++k  +l+    +++++l+++ k le+++  +++ L+ F+el+ i
  CCD24664.1 112 DTLGSAVRGLETDMDKVDSKLDALNsnyeKNSNNLMQKLKGLETIKSRLNNVLQTFNELKII 173
                 5555667778888888888888876111156789*************************876 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.16
       Sec34   8 keeecdelleqtdealeqLeeleekfksvsektsslheaceqlleeqkr 56 
                 ++e  dell+++d+++++L  l + f++ ++  s+++++ ++ ++e  +
  CCD24664.1 222 SNEINDELLKRIDQLNDLLP-LFNGFDKFNTVYSQFSTNIKHGVKEYLS 269
                 55667888999988877764.5566666666666666666666665555 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   4.4    0.0001      0.12      23     119 ..      45     171 ..      35     187 .. 0.75
   2 ?    2.3   1.9      0.14   1.6e+02      46      92 ..     201     238 ..     184     269 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
  Baculo_PEP_C  23 nairlqnvqilaqlatlldaietqLnalsedlksllaeldt....................rldtlltnLtdalnalq...dtlrneLtnlnsil.. 94 
                   n+i++ ++ +la l    + + ++L++   dl++l+++l +                    +l+  +++L +a+  l+   d+++++L++lns+   
    CCD24664.1  45 NQIQTASSALLARLDFYTKYLTKELETTIWDLEKLSEALPAtlssnwpaiedhdptsfgasKLEYYIDTLGSAVRGLEtdmDKVDSKLDALNSNYek 141
                   5677777777777777777777777777777777777776677777888888999999999999999999999999998888999999999886433 PP

  Baculo_PEP_C  95 ..tnLlssvtN...instLnnllqalnnld 119
                     +nL+ ++ +   i+s Lnn+lq+ n l+
    CCD24664.1 142 nsNNLMQKLKGletIKSRLNNVLQTFNELK 171
                   337888887652225678999999988874 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.14
  Baculo_PEP_C  46 qLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlns 92 
                   +L +l++ +        ++l+++l+  +++ n+++d+l ++++ ln 
    CCD24664.1 201 SLRTLEDTII-------SALNESLD--SEKSNEINDELLKRIDQLND 238
                   2333332222.......22222222..12333333333333333332 PP

>> Takusan  Takusan
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.37   4.4e+02      53      79 ..      55      81 ..      36      87 .. 0.78
   2 ?   12.2   1.6   0.00011      0.13       8      50 ..     142     184 ..     136     197 .. 0.83
   3 ?   -1.9   0.1       2.7   3.2e+03       9      27 ..     216     234 ..     205     239 .. 0.58

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.37
     Takusan 53 svrlnpeyekLklqhekvMsdlqklqn 79
                 +rl++ ++ L  + e +++dl+kl +
  CCD24664.1 55 LARLDFYTKYLTKELETTIWDLEKLSE 81
                568888888899999999999999876 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00011
     Takusan   8 ailekeqakkklEeLkleLrkitreRdELrdiLalytegslnd 50 
                 + ++ +q+ k lE++k+ L ++ +  +EL  iL++++ +  +d
  CCD24664.1 142 NSNNLMQKLKGLETIKSRLNNVLQTFNELKIILDISSDEKDKD 184
                 5567789999**************************9886555 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.7
     Takusan   9 ilekeqakkklEeLkleLr 27 
                  l++e+ ++  +eL++ + 
  CCD24664.1 216 SLDSEKSNEINDELLKRID 234
                 4455555555555555554 PP

>> APG17  Autophagy protein Apg17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.6    0.0005       0.6      41     137 ..     114     238 ..      89     273 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0005
                 HHHHHHHHHHHHHHHHHIIIIIIIIIIIIIIIIIHHHHHHHHHHHHHHHHHHHHHTSS-TTS.................STGGGC.S--TTT.....TH CS
       APG17  41 teflrdglkqQlkllekirkslerklekgkeefkdlikeldaanerLektlekLrktkvepsfrpegee..........ktLlDF.vdedsv.....ee 123
                 ++  ++gl+  ++ +++  + l+ ++ek ++ + + +k l++ ++rL++ l++ ++ k+ +++ +++++          ++L DF ++ ++      ++
  CCD24664.1 114 LGSAVRGLETDMDKVDSKLDALNSNYEKNSNNLMQKLKGLETIKSRLNNVLQTFNELKIILDISSDEKDkdvnrrkiatTSLDDFtISLRTLedtiiSA 212
                 444555566666666666666777777777777777777777777777777777777777777777755999999999988999855544442111133 PP

                 HHHHHHHH............HHHHHH CS
       APG17 124 lkealkes............idelqa 137
                 l+e+l+++            id+l++
  CCD24664.1 213 LNESLDSEksneindellkrIDQLND 238
                 44444333333333333333333333 PP

>> Swi5  Swi5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.7    0.0018       2.2       2      50 ..     122     171 ..     117     174 .. 0.73
   2 ?    3.8   0.2     0.052        62      10      49 ..     200     239 ..     191     240 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHH.HHHHHHHH CS
        Swi5   2 eaeikeleeqleelekelaelkeelkekkdpeetvkrhIkl.LheYNEiK 50 
                 e+++ ++ ++l++l++++++ +++l +k +  et+k+ ++  L+++NE+K
  CCD24664.1 122 ETDMDKVDSKLDALNSNYEKNSNNLMQKLKGLETIKSRLNNvLQTFNELK 171
                 5566666777777777777777777766677788777776449*****99 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.052
                 HHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHH CS
        Swi5  10 eqleelekelaelkeelkekkdpeetvkrhIklLheYNEi 49 
                   l++le+ + ++ +e  + ++++e+ ++ +k++ + N++
  CCD24664.1 200 ISLRTLEDTIISALNESLDSEKSNEINDELLKRIDQLNDL 239
                 5667778777766666666778*******99999999986 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   4.9    0.0033         4     198     295 ..     121     224 ..      25     268 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0033
       LMBR1 198 ldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklks......nenkteeslaklekqlikalqkrert 290
                 l+ +++k+  +++ ln++ e++ ++l ++lk ++++++++++  +  + l++il+ +  e  +++++      +  + + sl  le  +i+al+++ ++
  CCD24664.1 121 LETDMDKVDSKLDALNSNYEKNSNNLMQKLKGLETIKSRLNNVLQTFNELKIILDISSDEKDKDVNRrkiattSLDDFTISLRTLEDTIISALNESLDS 219
                 556677778888888988999999999999999999999988887778999999999999999999966655434445559999999999998888887 PP

       LMBR1 291 ekqwk 295
                 ek  +
  CCD24664.1 220 EKSNE 224
                 77633 PP

>> DASH_Dad3  DASH complex subunit Dad3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.4   8.8e+03      17      31 ..      67      81 ..      58      95 .. 0.55
   2 ?   10.1   0.9   0.00055      0.66      15      46 ..     121     155 ..     119     161 .. 0.92
   3 ?    0.7   0.9      0.49   5.8e+02      36      46 ..     197     207 ..     158     239 .. 0.51

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.4
   DASH_Dad3 17 enlktLaselkeLas 31
                ++l+t    l++L++
  CCD24664.1 67 KELETTIWDLEKLSE 81
                444443334444443 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00055
   DASH_Dad3  15 LaenlktLaselkeLasn...steeildgLReLEr 46 
                 L++ +++++s+l+ L+sn   ++++++++L+ LE+
  CCD24664.1 121 LETDMDKVDSKLDALNSNyekNSNNLMQKLKGLET 155
                 7889**************9989************7 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.49
   DASH_Dad3  36 eildgLReLEr 46 
                 + + +LR LE 
  CCD24664.1 197 DFTISLRTLED 207
                 33333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1192  (0.0664845); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 1924.31
//
Query:       CCD24665.1  [L=1223]
Description: hypothetical protein NDAI_0D03510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-42  145.1   4.7    1.8e-42  145.1   4.7    2.5  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    1.6e-39  135.3   0.7    1.6e-39  135.3   0.7    2.9  3  E1-E2_ATPase     E1-E2 ATPase
    5.2e-16   58.5   0.0    1.4e-15   57.1   0.0    1.8  1  Cation_ATPase    Cation transport ATPase (P-type)
    8.3e-16   58.9   0.1      2e-12   47.8   0.0    2.5  2  Hydrolase        haloacid dehalogenase-like hydrolase
    2.5e-07   30.3   0.0      9e-07   28.5   0.0    2.0  1  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    0.00081   19.2   0.3    0.00081   19.2   0.3    3.1  3  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
        6.5    6.6   9.1        2.6    7.9   0.0    3.5  3  DUF1980          Domain of unknown function (DUF1980)


Domain annotation for each model (and alignments):
>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.2      0.18   4.7e+02      56      77 ..     382     405 ..     351     457 .. 0.63
   2 !  145.1   4.7     7e-46   1.8e-42       2     180 ..     976    1167 ..     975    1169 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.18
  Cation_ATPase_C  56 iqgllqalvtllvffltlllf..g 77 
                      ++g++ a++ +lv+f+ +l++  +
       CCD24665.1 382 VYGCVAAIILFLVLFVRFLFYvfA 405
                      556666666666666655544221 PP

  == domain 2  score: 145.1 bits;  conditional E-value: 7e-46
  Cation_ATPase_C    2 lplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllf.....gisekenkls.s 87  
                       ++l+a+q+Lw+nL++D+l+alaLa+++p+++im+r+P+ ++ pli ++ +++il q++lq+++t++++f +  +f     +        + +
       CCD24665.1  976 SVLTAVQLLWVNLIMDTLAALALATDKPDPNIMDRKPKGRSSPLIYPSTWKMILSQSFLQLIITFTLHFHGKEIFfkgkeS-----ITGHeQ 1062
                       78**********************************************************************988433331.....222247 PP

  Cation_ATPase_C   88 nyaqtmaFitlvlsqifnalnlrsrre..............slfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewlia 165 
                       ++ ++m+F+t+v++q+f ++++r+++e              +l++f+ l +n+++l++++l+ + qvli+++  ++a f++a  + e+w++a
       CCD24665.1 1063 QQLNAMTFNTFVWLQFFTLFVSRKLDEgdgiknwrkriskaNLNFFQDLLRNYYFLVIMALIGGCQVLIMFF--GGAPFSIAHQTKEMWATA 1152
                       88**********************999*********************************************..9***************** PP

  Cation_ATPase_C  166 lllalvvllvdelvK 180 
                       +l++ ++++++ +v+
       CCD24665.1 1153 ILCGTLSIPIGLIVR 1167
                       **********99987 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.3   0.7   6.2e-43   1.6e-39       4     180 ..     219     458 ..     216     459 .. 0.96
   2 ?   -2.6   2.6       1.3   3.3e+03     114     155 ..     945     984 ..     941     999 .. 0.80
   3 ?   -0.7   0.2      0.34   8.7e+02     116     164 ..    1110    1165 ..    1098    1174 .. 0.55

  Alignments for each domain:
  == domain 1  score: 135.3 bits;  conditional E-value: 6.2e-43
                   --EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-.................................... CS
  E1-E2_ATPase   4 pptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvek.................................... 64 
                    +++ v+r+ +ee + +++l +GDi++l++gd++paD ++v g++e+des++TGEs  ++k                                    
    CCD24665.1 219 NRKVIVVRNAQEEMVSIHDLLVGDIIKLQTGDVIPADSVLVRGECEIDESSVTGESDTIKKvrlssalrkfasinetnkknnnnnnnngslheldig 315
                   5678899****************************************************************************************** PP

                   ........G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT........ CS
  E1-E2_ATPase  65 ........ekgdmvfsGtvvvsgeakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla........ 145
                              +m++sG+ ++sg  +avVta+g ++  g+ + +++ +  ++tplq+ l++l+  +++ ++++a+++fl++++++ + +        
    CCD24665.1 316 svtpegvhLPDCMLISGSKILSGLGTAVVTAVGVNSIHGRTMMSLKVE-TEETPLQERLSQLADSISVYGCVAAIILFLVLFVRFLFYVfapngrfh 411
                   ***999966**********************************99987.9*********************************88888888889999 PP

                   ............HHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 146 ............eallralallvaaiPcaLplavplalalgarrlak 180
                               ++++ a++++v+a+P++Lplav+lala++++r+ k
    CCD24665.1 412 dldpaqkgnkfmNIFITAVTIIVVAVPEGLPLAVTLALAFATTRMTK 458
                   99999*****99*********************************87 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
                   HHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHH CS
  E1-E2_ATPase 114 kldklgkvlvpvvlliallvflialllgkslaeallralall 155
                    ++k++++  +v +++++l+f+ a+  +++  +++l a++ll
    CCD24665.1 945 SIKKFIQFQLIVNITAVILTFVSAVASEDE--TSVLTAVQLL 984
                   688999999999999999999999887777..5777777776 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.34
                    HHHHHHHHHHHHHHHHHHHHS-STTTSSTT.......HHHHHHHHHHHHHS-TTHH CS
  E1-E2_ATPase  116 dklgkvlvpvvlliallvflialllgksla.......eallralallvaaiPcaLp 164 
                    d l +++++v+++++  + ++ ++ g+ ++       e+   a+   + +iP++L+
    CCD24665.1 1110 DLLRNYYFLVIMALIGGCQVLIMFFGGAPFsiahqtkEMWATAILCGTLSIPIGLI 1165
                    55556655555555544444444444444447777754444455555556666664 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   5.6e-19   1.4e-15      18      89 ..     569     697 ..     536     699 .. 0.72

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 5.6e-19
  Cation_ATPase  18 k..............................................llGnktEsALlvlaekl...........gldteelreetkkvqeipFns 56 
                    +                                              ++G+ktE+ALl +a++              d+ee     +++q+ipF+s
     CCD24665.1 569 NqqtsspskwnilswfrsghckkanndkdddddddlmkhamegrqepYIGSKTETALLAMAKRSlnlkfgslqdlRDDPEERFGVDEIIQVIPFES 664
                    04444455555666666666666666666666666777777777777****************9999988887777777777777*********** PP

  Cation_ATPase  57 srKrmsvvlklepekkvrlyvKGApeiilkrCt 89 
                    srK+ ++v+k + ++ +r ++KGA+ei+ ++C 
     CCD24665.1 665 SRKWGGIVVKYKASGLIRFFIKGAAEIVSNCCH 697
                    ********************************7 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00073       1.9       2      23 ..     476     497 ..     475     567 .. 0.88
   2 !   47.8   0.0     8e-16     2e-12     107     210 .]     780     903 ..     606     903 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00073
                 SEEEEESBTTTBCHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvi 23 
                 ++v+ Dk+GTLt+ ++s+++ +
  CCD24665.1 476 TAVCSDKTGTLTENRMSIVKGF 497
                 5899***********9987754 PP

  == domain 2  score: 47.8 bits;  conditional E-value: 8e-16
                 HHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT...GGGE.SEEEEHHCESSTTT..................SHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxx.xxxxxxxxxxxxxx..................xxxxxxxxx RF
   Hydrolase 107 alavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlG...ddyf.daviasdietvakp..................spegkvaai 183
                 +++++ i+dp  ++++++  v++ ++ag+ v ++tgdn  ta+++a++++   ++++ d   a +  ++ k                   spe+k+ ++
  CCD24665.1 780 LDGIVGIQDP--LREGVKNSVQQCQKAGVIVRMVTGDNVLTARAIARNCNilsEEAYnDPDSAMEGPKFRKLtkderikllpklrvlarsSPEDKRVLV 876
                 6789999***..**************************************7763333222222222223333555666666666666666********* PP

                 HHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 184 reLqgkpeevamVGDgvnDaaalaaAg 210
                 + L+g +e va+ GDg nDa+al+ A+
  CCD24665.1 877 ETLKGMGEVVAVTGDGTNDAPALKLAD 903
                 ************************997 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   3.5e-10     9e-07       9      69 .]      84     155 ..      78     155 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.5 bits;  conditional E-value: 3.5e-10
  Cation_ATPase_N   9 vlekLetdlenGLtq...........aeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69 
                      +++ L+t+l++G+++               +r k y  N+++e+ +k+++++++++f++ +++lL  aa+vs
       CCD24665.1  84 IFKYLNTSLQTGIKTptrnnsnikwnYSNTKRYKLYSDNRIPERIPKTFLQLVWEAFNDKTMLLLTGAAIVS 155
                      667777777777766343333333333334566**************************************8 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.9       3.3   8.4e+03     130     167 ..      57      94 ..      26     123 .. 0.46
   2 ?    0.4   0.0      0.17   4.4e+02      18      54 ..     792     828 ..     785     834 .. 0.87
   3 !   19.2   0.3   3.2e-07   0.00081     197     255 .]     877     936 ..     873     936 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.3
                  EESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTT CS
  Hydrolase_3 130 eidseeeledeeiakililkdkekldelekelksklnk 167
                  + ++ +el+d + +   i+  +++  +++k+l+  l++
   CCD24665.1  57 TTKQLSELHDPKSMRSYISLFQNDKLNIFKYLNTSLQT 94 
                  22222222222222222444444444444444444443 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.17
                  HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCC CS
  Hydrolase_3  18 ektkeaikklkekgikvviATGRslravlpvleelgl 54 
                  e  k+ +++++++g+ v   TG ++ +++ ++++ ++
   CCD24665.1 792 EGVKNSVQQCQKAGVIVRMVTGDNVLTARAIARNCNI 828
                  5678999****************99999999888775 PP

  == domain 3  score: 19.2 bits;  conditional E-value: 3.2e-07
                  HHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE--GGG.THHHHHH CS
  Hydrolase_3 197 kelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtksnne.dGVakal 255
                  ++l+   e v++ GDg ND + L+ a++g+ mg +  ev   A+ ++  +++ +++++a+
   CCD24665.1 877 ETLKGMGEVVAVTGDGTNDAPALKLADVGFSMGISGTEVAREASDIILMTDDfGAIVDAI 936
                  6666667789999******************************99999999999999987 PP

>> DUF1980  Domain of unknown function (DUF1980)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   2.8       2.5   6.4e+03     112     146 ..      15      49 ..       3      69 .. 0.48
   2 ?    7.9   0.0     0.001       2.6      37     110 ..     387     473 ..     379     574 .. 0.64
   3 ?    2.5   0.1     0.048   1.2e+02      38      84 ..    1117    1164 ..    1113    1175 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.5
     DUF1980 112 kseqkedegtqeqslkpdtssyvtkdgydkemkke 146
                 +++ ++++ + +++l  ++s + + ++ ++++++ 
  CCD24665.1  15 QDADSDEQASAQDYLLDNDSLSQEREQEQEAEAQD 49 
                 23333333333334333333333333222222222 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.001
     DUF1980  37 famvvllilalvqliraqkkkecghdHeeksfikkllsylilviPlllglllptkvldssiakakGfnfslak..............e 110
                  a++++l+l++  l+ ++  + + hd ++ ++ +k+++++i ++ ++++ ++    l  ++a a   ++ ++k              +
  CCD24665.1 387 AAIILFLVLFVRFLFYVFAPNGRFHDLDPAQKGNKFMNIFITAVTIIVVAVPEGLPLAVTLALAF-ATTRMTKdgnlvrnlracetmG 473
                 34445555554445555555523366669999****************99998777777776665.2222222355555555666652 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.048
     DUF1980   38 amvvllilalvqliraqkkke.cghdHeeksfikkllsylilviPlll 84  
                   +v++++++  q++ ++         H++k++++ ++ +  l+iP+ l
  CCD24665.1 1117 FLVIMALIGGCQVLIMFFGGApFSIAHQTKEMWATAILCGTLSIPIGL 1164
                  4566666666665555555544788999*****************954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1180  (0.0658152); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.45
# Mc/sec: 8110.27
//
Query:       CCD24666.1  [L=909]
Description: hypothetical protein NDAI_0D03520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-48  164.3   4.9    8.3e-48  162.3   3.8    2.5  2  E1-E2_ATPase     E1-E2 ATPase
    1.4e-19   71.3   0.1      4e-19   69.7   0.1    1.9  1  Hydrolase        haloacid dehalogenase-like hydrolase
    1.7e-10   40.4   0.2    5.6e-10   38.8   0.0    2.0  2  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
     0.0022   18.1   0.0     0.0042   17.1   0.0    1.4  1  Cation_ATPase    Cation transport ATPase (P-type)
     0.0024   17.6   0.1     0.0046   16.7   0.1    1.5  1  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.037   14.1   0.1       0.62   10.1   0.0    2.5  2  SIS_2            SIS domain


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   3.8   2.8e-51   8.3e-48       3     181 .]     166     346 ..     164     346 .. 0.98
   2 ?   -0.6   0.0      0.28   8.4e+02      53      79 ..     545     571 ..     534     576 .. 0.87

  Alignments for each domain:
  == domain 1  score: 162.3 bits;  conditional E-value: 2.8e-51
                   S--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S..EEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTT CS
  E1-E2_ATPase   3 lpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa..evdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgki 97 
                   l+++a virdg+++e++a+e+vpGDi++l+ g ++paDgriv + +  ++d+sa+TGEsl+v+k++gd+ fs+++v++gea +v+tatg +t++g++
    CCD24666.1 166 LANSAIVIRDGQLTEVPANEVVPGDILQLEDGTIIPADGRIVTEDCfvQIDQSAITGESLAVDKHYGDQTFSSSTVKRGEAFMVITATGDNTFVGRA 262
                   678999******************************************************************************************* PP

                   STTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT CS
  E1-E2_ATPase  98 arlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplalalgarrlakk 181
                   a+lv++a+  + ++++ l+ +g +l ++v++ +llv+ + ++++++++++l  +l++ ++ +P +Lp++v++++a+ga+ lakk
    CCD24666.1 263 AALVNKAAGGQGHFTEVLNGIGIILLVLVIVTLLLVWTASFYRTDGIVRILRYTLGITIVGVPVGLPAVVTTTMAVGAAYLAKK 346
                   ***********************************************999999*****************************97 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.28
                   TTTS---S-EE-G-TTEE-TT-EEEE- CS
  E1-E2_ATPase  53 saLTGEslpvekekgdmvfsGtvvvsg 79 
                    +LTG+++ + ke+  ++  Gt++ + 
    CCD24666.1 545 KMLTGDAVGIAKETCRQLGLGTNIYNA 571
                   69*************999999999875 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.1   1.3e-22     4e-19       3     210 .]     364     636 ..     362     636 .. 0.68

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 1.3e-22
                 EEEEESBTTTBCHH.HHHHHHHHHH....CHHHHHHHHHH.................HHCHHHHHHHHHHHHH........HHHHHHHHHETTTE.... CS
                 xxxxxxxxxxxxxx.xxxxxxxxxx....xxxxxxxxxxx.................xxxxxxxxxxxxxxxx........xxxxxxxxxxxxxx.... RF
   Hydrolase   3 tvvfDkdGTLttge.psvedvivsa....alalaaaletg.................sehpigkalvaaakar........sgaltgfatfigrg.... 67 
                  ++ Dk+GTLt+ + + +e  +v+     +l l a l+ +                 ++ p +k+   ++k +        s                 
  CCD24666.1 364 ILCSDKTGTLTKNKlSLHEPYTVEGvsadDLMLTACLAASrkkkgldaidkaflkslAQYPQAKNALTKYKVLefhpfdpvS------------Kkvta 450
                 6899*******99963344444444555555666666665444433332222333333333333333333333444444444............04444 PP

                 ..........HHHHTHHHHHHHH.........HCHHHHHHHHHHHHHHCHHHHHH.......TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEE CS
                 ..........xxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  68 ..........ayaigkpewltal.........dippdlgaaigsaqsqgrtvall.......qaralavftiadplkvkpeaaeavasLkaagievvll 140
                              +g p ++ +          d+++++++++ ++ s+g  +  +         ++l+v    dp  +++++ae+v + ++ g++v +l
  CCD24666.1 451 vvespegeriICVKGAPLFVLKTveedhpipeDVHENYENKVAELASRGFRALGVarkrgegHWEILGVMPCMDP--PRDDTAETVTEARRLGLRVKML 547
                 4444444588777888888888888888555555555555555666666666666877776655***********..********************** PP

                 ESSEHHHHHHHHHHTT...............GGGESEEEEHHCES................STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxx................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 141 tgdnpetaeraanqlG...............ddyfdaviasdiet................vakpspegkvaaireLqgkpeevamVGDgvnDaaalaa 208
                 tgd    a+++ +qlG                            +                +a++ p++k ++++ Lq ++  vam GDgvnDa+ l++
  CCD24666.1 548 TGDAVGIAKETCRQLGlgtniynaerlglsgG------------GdmpgseladfvenadgFAEVFPQHKYRVVEILQNRGYLVAMTGDGVNDAPSLKK 634
                 ****************9976666555444442............14444555555556999*****************99999**************** PP

                 TT CS
                 xx RF
   Hydrolase 209 Ag 210
                 A+
  CCD24666.1 635 AD 636
                 98 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   1.9e-13   5.6e-10      12      69 .]      69     125 ..      60     125 .. 0.95
   2 ?   -3.2   0.3       2.4   7.2e+03      55      68 ..     280     293 ..     277     294 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.8 bits;  conditional E-value: 1.9e-13
  Cation_ATPase_N  12 kLetdlenGLtqaeaaerlkkyGpNelkekkkkslwvkllkqftnplvilLlvaalvs 69 
                       L+td++ GLt +e+ +r+kkyG N++  +  +sl+vk++  f  p+  ++++aa+++
       CCD24666.1  69 LLQTDPSYGLTADEVSRRRKKYGLNQM-SEDNESLVVKFVMFFVGPIQFVMEAAAILA 125
                      579************************.9**************************985 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.4
  Cation_ATPase_N  55 tnplvilLlvaalv 68 
                       n + i+Llv+++v
       CCD24666.1 280 LNGIGIILLVLVIV 293
                      677789****9998 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.4e-06    0.0042      22      87 ..     410     473 ..     398     476 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.4e-06
  Cation_ATPase  22 nktEsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkr 87 
                    ++ + A l+  ++   + +++  ++k ++  pF+ + K  + v++  pe++ ++ vKGAp  +lk 
     CCD24666.1 410 DAIDKAFLKSLAQY-PQAKNALTKYKVLEFHPFDPVSKKVTAVVES-PEGERIICVKGAPLFVLKT 473
                    56677888888888.888899999**************99999998.9************999986 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.5e-06    0.0046     206     243 ..     619     656 ..     606     668 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.5e-06
                  EEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE CS
  Hydrolase_3 206 viafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvt 243
                  v+  GDg ND + L++a++g+A++ a++ + +aAd v 
   CCD24666.1 619 VAMTGDGVNDAPSLKKADTGIAVEGATDAARSAADIVF 656
                  6778*******************************997 PP

>> SIS_2  SIS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00021      0.62      76     126 ..     216     266 ..     200     271 .. 0.81
   2 ?    0.9   0.0      0.14   4.2e+02      43     116 ..     548     627 ..     528     652 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00021
                 ST..THHHHHTT-TTHHHHHHHHTT--TT-EEEEE-SS--SHHHHHHHHHH CS
       SIS_2  76 daeatkssalerdegyakqilrlvrlkpgDvLlviSnsGnnavvveaaeaa 126
                 d++a + + l+ d+ y++q  +++ +k g++++vi + G n+ v  aa  +
  CCD24666.1 216 DQSAITGESLAVDKHYGDQTFSSSTVKRGEAFMVITATGDNTFVGRAAALV 266
                 445677788999*****************************9987777655 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.14
                 SGGGHHHHHHTSSSTT-BTTEEEE--GGGSSSSST...THHHHHTT-TTHHHHHHHH.TT-....-TT-EEEEE-SS--S CS
       SIS_2  43 sGhSaalaeelaaragglaeferialpalalhtda.eatkssalerdegyakqilrl.vrl....kpgDvLlviSnsGnn 116
                 +G +  +a+e++ ++g   +++      l    d+ +   + ++e+ +g+a+ + ++ +r+    +++  L+ +  +G+n
  CCD24666.1 548 TGDAVGIAKETCRQLGLGTNIYNAERLGLSGGGDMpGSELADFVENADGFAEVFPQHkYRVveilQNRGYLVAMTGDGVN 627
                 56666667777777776666666666666666666667777777777777777655542222224666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       851  (0.047465); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 6220.89
//
Query:       CCD24667.1  [L=809]
Description: hypothetical protein NDAI_0D03530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-65  212.0  14.5    2.6e-09   36.3   0.3    8.4  8  PUF       Pumilio-family RNA binding repeat
    0.00038   20.8   1.3       0.42   11.0   0.1    3.6  3  CPL       CPL (NUC119) domain


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   1.1e-10   9.7e-07       3      35 .]     489     521 ..     487     521 .. 0.91
   2 !   29.0   0.0   5.8e-11   5.2e-07       5      31 ..     527     553 ..     523     556 .. 0.85
   3 !   23.4   0.0   3.6e-09   3.2e-05       3      29 ..     561     588 ..     559     594 .. 0.81
   4 !   36.3   0.3   2.9e-13   2.6e-09       1      35 []     596     630 ..     596     630 .. 0.95
   5 !   28.8   0.4   6.6e-11     6e-07       5      33 ..     636     664 ..     635     666 .. 0.91
   6 !   29.7   0.1   3.4e-11     3e-07       2      33 ..     669     700 ..     668     702 .. 0.92
   7 !   21.7   0.0   1.2e-08   0.00011       2      28 ..     709     733 ..     708     741 .. 0.83
   8 !   17.2   0.0   3.2e-07    0.0028       6      25 ..     750     769 ..     747     775 .. 0.87

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.1e-10
                 GGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   3 kgnlvqLstdqyGnyvvQkllehateeqkklil 35 
                  gn+ +L++dq+G++++Qk l+ +++e  ++i+
  CCD24667.1 489 AGNIYSLCKDQHGCRFLQKQLDILGTEAADKIF 521
                 689********************9999888886 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 5.8e-11
                 GHHHHHTSTTHHHHHHHHHHHSCHHHH CS
         PUF   5 nlvqLstdqyGnyvvQkllehateeqk 31 
                 + ++L+td +Gny++Qkl+e+ ++eq+
  CCD24667.1 527 HTIELMTDSFGNYLIQKLIERVSTEQR 553
                 889******************777776 PP

  == domain 3  score: 23.4 bits;  conditional E-value: 3.6e-09
                 GGGHHHHHTSTTHHHHHHHHHHH.SCHH CS
         PUF   3 kgnlvqLstdqyGnyvvQklleh.atee 29 
                 ++ +v+++ d++G++++Qkl+e+  t  
  CCD24667.1 561 SPQFVEIALDPHGTRALQKLIECiDTDD 588
                 6899******************944444 PP

  == domain 4  score: 36.3 bits;  conditional E-value: 2.9e-13
                 HHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   1 sikgnlvqLstdqyGnyvvQkllehateeqkklil 35 
                 s++g++vqLs+d +Gn+vvQk+l+++ +++ ++i+
  CCD24667.1 596 SLSGSIVQLSKDLNGNHVVQKCLQKLHPKDFQFIF 630
                 5899*********************9999999997 PP

  == domain 5  score: 28.8 bits;  conditional E-value: 6.6e-11
                 GHHHHHTSTTHHHHHHHHHHHSCHHHHHH CS
         PUF   5 nlvqLstdqyGnyvvQkllehateeqkkl 33 
                 n v+++t+++G++v+Q++++h t+eq++ 
  CCD24667.1 636 NSVDIATHRHGCCVLQRCFDHGTKEQCET 664
                 6799*********************9876 PP

  == domain 6  score: 29.7 bits;  conditional E-value: 3.4e-11
                 HGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehateeqkkl 33 
                 +++++ +L  d++GnyvvQ+++++ te++k++
  CCD24667.1 669 LLKHVDKLTLDPFGNYVVQYIITKETEKDKFD 700
                 789*********************99999876 PP

  == domain 7  score: 21.7 bits;  conditional E-value: 1.2e-08
                 HGGGHHHHHTSTTHHHHHHHHHHHSCH CS
         PUF   2 ikgnlvqLstdqyGnyvvQkllehate 28 
                 +k+++ +Ls++++G++v++kll +  +
  CCD24667.1 709 LKPKIAELSVHKFGSNVIEKLLRT--P 733
                 79999*****************84..4 PP

  == domain 8  score: 17.2 bits;  conditional E-value: 3.2e-07
                 HHHHHTSTTHHHHHHHHHHH CS
         PUF   6 lvqLstdqyGnyvvQklleh 25 
                 +  L +d yGnyv+Q+ l+ 
  CCD24667.1 750 IPNLLNDSYGNYVLQTALDI 769
                 7789**************95 PP

>> CPL  CPL (NUC119) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.45     4e+03     102     124 ..      36      58 ..      11      60 .. 0.63
   2 !   11.0   0.1   4.7e-05      0.42      45     133 ..     470     583 ..     459     592 .. 0.82
   3 !    6.7   0.0     0.001       8.9      57     106 ..     663     713 ..     658     765 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.45
         CPL 102 akgdlvaee....kdeelhliekpfgs 124
                 + ++    +    ++e++h+ ++p++s
  CCD24667.1  36 VMEE----QpgkvVAEQMHVNNNPSSS 58 
                 2222....2344799999999998876 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 4.7e-05
         CPL  45 evRrkELleaispallsaiaknaeellsdnlgsqfva...evLlsaegdkq......................eaieaiaklakgdlvaeekdeelhli 118
                 ++R+ E ++++++a l+  a n+ +l +d+ g+ f++   ++L ++  dk                       ++ie++ +    +l +    + + ++
  CCD24667.1 470 NQRKLEEMSRYADATLDQFAGNIYSLCKDQHGCRFLQkqlDILGTEAADKIfeetkyhtielmtdsfgnyliqKLIERVSTEQRTELAKIASPQFVEIA 568
                 678888888999999999999999999999999999633356777777766888999999999999999888888888888888887777788889999 PP

         CPL 119 ekpfgsrlLKaLiqg 133
                  +p+g+r+L++Li++
  CCD24667.1 569 LDPHGTRALQKLIEC 583
                 9************97 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.001
         CPL  57 pallsaiaknaeellsdnlgsqfvaevLlsaegdkq.eaieaiaklakgdl 106
                 + l + + k++++l+ d +g  +v+ ++++++++++ + +++i+ l+k ++
  CCD24667.1 663 ETLCDELLKHVDKLTLDPFGNYVVQYIITKETEKDKfDYTHKIVHLLKPKI 713
                 67888999********************99888666688888888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 5769.87
//
Query:       CCD24668.1  [L=1107]
Description: hypothetical protein NDAI_0D03540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-29  102.5   1.6    1.9e-29  102.5   1.6    1.9  2  Fungal_trans  Fungal specific transcription factor domain
    3.7e-07   30.2  16.7    7.3e-07   29.2  16.7    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
        5.8    7.0   6.3         79    3.3   5.1    2.4  2  HypA          Hydrogenase/urease nickel incorporation, metall


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3      0.28   1.7e+03     192     230 ..     116     144 ..      96     226 .. 0.51
   2 !  102.5   1.6   3.2e-33   1.9e-29       1     261 [.     357     697 ..     357     703 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.28
  Fungal_trans 192 lwesddaseetlvetklsneeksrkiasfllaLkkilsk 230
                   +++ ++          ++n+ +  +++s +++L ++ s+
    CCD24668.1 116 INNLNN----------INNNNNVISNSSNENSLRNMESN 144
                   222222..........34555555555555555555544 PP

  == domain 2  score: 102.5 bits;  conditional E-value: 3.2e-33
  Fungal_trans   1 ldrffsnfhpqf............pilhkpsflpkt..........ssenssksayaspllllailalGalfsesetkesnssltses......... 66 
                   l rff+ +++++            ++l + +++  t           s +s+++a+ ++l++l+i+  +++f e+ tk++ ++l + +         
    CCD24668.1 357 LLRFFDMCFQHLndgcvsianpleNYLRRKNLMAPTptptpsgnssVSVGSPNTANEKSLVVLLINRFPQPFIENLTKITIKQLMETVdkdfemfkl 453
                   689******9999********9999999999999999999999999999*******************************88888777999988888 PP

  Fungal_trans  67 ................................................qefiafplraeili...........hedfsspssslwilqsLlllelye 104
                                                                                i           ++    +++ l++l+ L+ l    
    CCD24668.1 454 vldmfeahrsgfesfmvneapkkvkdngayelttelietfhrfceseeL------------IlaltysyynstLYRQIENNDGLEYLEILVSLLGHQ 538
                   8888888888888888888888887777766665554444444333320............1444445555554455555555************** PP

  Fungal_trans 105 ktssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcddddlwesddasee 201
                   +++++ +++ ++++va++ a+++gL+r+++y g      l+e +a +rr++ww+ ++++k + +k+G +p++dds++n++LP+++   ++ ++a+++
    CCD24668.1 539 LWCEEFYGFQKVLSVALNQAVKMGLQRWEFYIG------LDEQTALRRRKVWWKLYSFEKVFISKMGCQPTIDDSKMNCLLPKSFISAGFLTNADFI 629
                   *********************************......*******************************99************************* PP

  Fungal_trans 202 tlvetk.....lsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlq...seklswveelera 261
                    +++++     ++++++s++ +++ +a+ +++s +++ +l++e  +++r+ +   s k+  + e++++
    CCD24668.1 630 CKINKVskpdhFDSMPISDLAEYGTYAVLQVVSVFFSDVLYNERYTSIRNVAkppSIKTHYLSEISNE 697
                   ****99********************************************996666666666666665 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2  16.7   1.2e-10   7.3e-07       1      39 [.      42      78 ..      42      80 .. 0.90

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.2e-10
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39
                +aCdnCrk+K+KC +k P C  C+ ++++C  ys ++ r
  CCD24668.1 42 KACDNCRKRKIKCTGKMP-CPTCEAYQCPCI-YSAPKPR 78
                59****************.************.7776665 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   5.1     0.013        79      58      96 ..      29      67 ..      15      72 .. 0.77
   2 ?    2.0   0.0     0.035   2.1e+02       3      36 ..     210     245 ..     209     252 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.013
                TT-EEEEEEE--EEEETTTS-EEECHHHHHS-TTTSSS- CS
        HypA 58 egaeLeieevpvkvrCreCgkefeleekalrCpkCgsad 96
                ++++++    +v+  C++C+k+  + + ++ Cp+C++ +
  CCD24668.1 29 QDTKIKKPAAKVSKACDNCRKRKIKCTGKMPCPTCEAYQ 67
                556666677889999*****87765544799****9976 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHHHHHH.CC.TT..EEEEEEEEEETT CS
        HypA   3 Elsiaesivevveeea.ke.aaarkvtkvkvevGel 36 
                 Elsi + +v+++e+   ++ ++ +++ ++k+++ +l
  CCD24668.1 210 ELSILQTMVRQLEKLHkSDsHRNNTIANIKLQINDL 245
                 9************99954468899*******99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       946  (0.0527637); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 7335.79
//
Query:       CCD24669.1  [L=1118]
Description: hypothetical protein NDAI_0D03550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-29  102.0   3.5    2.7e-29  102.0   3.5    2.4  3  Fungal_trans  Fungal specific transcription factor domain
    9.8e-08   32.0  15.4    2.2e-07   30.9  15.4    1.6  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2      0.29   2.6e+03     192     230 ..     110     148 ..     101     243 .. 0.67
   2 !  102.0   3.5     3e-33   2.7e-29      18     249 ..     401     698 ..     358     716 .. 0.82
   3 ?   -2.7   0.1      0.26   2.3e+03      57      57 ..     999     999 ..     928    1052 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.29
  Fungal_trans 192 lwesddaseetlvetklsneeksrkiasfllaLkkilsk 230
                    ++ ++++e t+v ++++n++++  ++++ + L++++++
    CCD24669.1 110 SNNNNSNNENTNVINNIENSKMPGYKSLSPIVLNELQNN 148
                   444445555555554455555555555555555555444 PP

  == domain 2  score: 102.0 bits;  conditional E-value: 3e-33
  Fungal_trans  18 psflpkt.ssenssksayaspllllailalGalfsesetkesnssltses..............................................q 67 
                    +++++t ss +s+++a  ++l++++i+ l+++f+++ t+ +n+ l + +                                               
    CCD24669.1 401 STYNNNTtSSVGSPNTATEKSLVAILINRLPQPFVQNMTSLTNNHLLNTMnddfamfklilkmceahrngfeklmmnsipgqtpparftqmkpdalE 497
                   344445599***************************************99*9999998888888888888888888888888888888877777774 PP

  Fungal_trans  68 efiafplraeili...........hedfsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrr 153
                    + +f+ + eil+           ++ ++s +  l +l+ L+ l    ++ss+ +++e++ +vav+ a +lgL r+++yvg      l+e++ae+rr
    CCD24669.1 498 SYSCFCEEEEILLalaysyynstlYHIMQSGDV-LVYLELLVSLLEHQLWSSEFYGFEKVTCVAVNHAMRLGLPRWEYYVG------LDEATAERRR 587
                   444444455555566566666664566666666.99999******************************************......********** PP

  Fungal_trans 154 RlwwaaFylDktialklGrppllddsqinlpLPcddddlwesddaseetlvetk.....lsneeksrkiasfllaLkkilskiagsllsiekqlqqr 245
                   R+ww+ ++++k+i l +G + ++d+ ++n++L  d+++ ++ ++++++++v++      ++++ + +++++++ a+ +i s+++++ll++e  ++++
    CCD24669.1 588 RIWWKLYCFEKIIILETGTNLFIDERKMNCLLTSDFREAGFLNSVEFIEKVDKIprskvFDKMNIKELKSYGECAMLQIASNLYSELLYNERYTSIK 684
                   ***************************************************855******************************************* PP

  Fungal_trans 246 dlq..........s 249
                   + +          +
    CCD24669.1 685 NISkpeyikeiymN 698
                   ***55555555554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.26
  Fungal_trans  57 e 57 
                   +
    CCD24669.1 999 Q 999
                   1 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9  15.4   2.5e-11   2.2e-07       1      39 [.      61      97 ..      61      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 2.5e-11
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39
                +aCdnCr++K+KC +k+P C+ C+ +++ C  ys ++ r
  CCD24669.1 61 KACDNCRRRKIKCTGKTP-CATCEAYQCLCI-YSTQRGR 97
                59****************.************.8877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1205  (0.0672095); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.26s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 7403.97
//
Query:       CCD24670.1  [L=172]
Description: hypothetical protein NDAI_0D03560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-33  114.5   0.1    4.5e-33  114.3   0.1    1.0  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.3   0.1   2.5e-37   4.5e-33      48     189 ..       1     147 [.       1     148 [. 0.94

  Alignments for each domain:
  == domain 1  score: 114.3 bits;  conditional E-value: 2.5e-37
                 EEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHH CS
  Proteasome  48 vafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgrrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaa 146
                 +++ G ++Dar+ + ra+aea+++r++yg+++p+++l++r+a++ q ytqr+++rp+gv l +++vdee gp++y+ dp+G y+++k a+a+G +++++
  CCD24670.1   1 MVANGPIPDARNAATRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKSDPAGYYVGYK-ATATGPKQQEI 98 
                 7899**********************************************************************************8.*****889*** PP

                 HHHHHHHH....STTBSHHHHHHHHHHHHHHHHH..HBTTSCSSEEEEE CS
  Proteasome 147 ktalekey....kedltleeavelavkalkeale..rdklsgknievav 189
                 +t le+ +    ++ l++++++++++ a+ ++++  + ++++k +ev++
  CCD24670.1  99 TTNLENYFkkkeTSYLEEDSWEKVVEFAIAHLIDslGTEFTKKDLEVGI 147
                 ********765555599****************9667779999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1248.20
//
Query:       CCD24671.1  [L=169]
Description: hypothetical protein NDAI_0D03570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-26   92.1   0.8    3.7e-26   91.1   0.8    1.5  1  DUF962           Protein of unknown function (DUF962)
  ------ inclusion threshold ------
          2    9.1   9.5       0.26   12.0   5.7    1.4  2  Phage_holin_4_2  Mycobacterial 4 TMS phage holin, superfamily


Domain annotation for each model (and alignments):
>> DUF962  Protein of unknown function (DUF962)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   0.8   4.1e-30   3.7e-26       2      94 ..       6     147 ..       5     148 .. 0.97

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 4.1e-30
      DUF962   2 ksleefyafYlaeHsnpinrllHfigvplilltvlllllrak.................................................lklllalf 51 
                 ++l++ + fY+ +H+n+in+l+H i+vp+il++++++l r++                                                 l + ++lf
  CCD24671.1   6 AKLRKELLFYKYYHHNRINVLIHSIFVPTILFSACCFLNRIElfkgitvtnlfsigytlyyihlylptgllaglifiivniglkkrwihlsLPTEITLF 104
                 57889999*********************************************************************************99999***** PP

      DUF962  52 vvgyifafvGHfvfEkrkPAlfknplqsllidplmvllellgk 94 
                 ++g+ ++f+GH+vfE+rkPA+++n++qsl+++p+++l e+l+k
  CCD24671.1 105 IIGWLVQFIGHGVFERRKPAVLDNLIQSLVLAPYFILFEFLFK 147
                 *************************************999987 PP

>> Phage_holin_4_2  Mycobacterial 4 TMS phage holin, superfamily IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   5.7   2.9e-05      0.26       4      72 ..      32     113 ..      25     120 .. 0.80
   2 ?   -3.1   0.1       1.4   1.3e+04      52      59 ..     133     140 ..     122     148 .. 0.44

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.9e-05
  Phage_holin_4_2   4 llrllvnalallvaalllpgvevas..............fltallaalvlgllnalvkpilkllslpltiltlGlftlvinal 72 
                      + ++l +a  +l    l++g++v++              + t lla+l++ ++n+ +k   + lslp t +tl +++++++++
       CCD24671.1  32 VPTILFSACCFLNRIELFKGITVTNlfsigytlyyihlyLPTGLLAGLIFIIVNIGLKKRWIHLSLP-TEITLFIIGWLVQFI 113
                      5567888888888888889999988555555555544444444************************.899999999998865 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.4
  Phage_holin_4_2  52 llslplti 59 
                      l+  p  i
       CCD24671.1 133 LVLAPYFI 140
                      22233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1289.56
//
Query:       CCD24672.1  [L=785]
Description: hypothetical protein NDAI_0D03580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.1e-158  529.1   0.0   1.4e-158  528.8   0.0    1.1  1  Aconitase    Aconitase family (aconitate hydratase)
    1.1e-44  151.9   0.0    2.1e-44  151.0   0.0    1.5  1  Aconitase_C  Aconitase C-terminal domain


Domain annotation for each model (and alignments):
>> Aconitase  Aconitase family (aconitate hydratase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.8   0.0  1.5e-162  1.4e-158       1     461 []      17     474 ..      17     474 .. 0.96

  Alignments for each domain:
  == domain 1  score: 528.8 bits;  conditional E-value: 1.5e-162
   Aconitase   1 ekiwdahlvee..eg..iayvpdrvllqdvtgvqalvdlaaareavrrlggtlatidhlvpvdlvidhsvgaeealeknledefernkeryefLksaak 95 
                 +k++dah+v++  +g  ++y+ dr+++++vt++qa+++l++a ++vrr ++tlat+dh++p++ + d      e++++ ++++ +r   ++++L+++ k
  CCD24672.1  17 DKVFDAHVVHKddDGsyLLYI-DRHIIHEVTSPQAFEGLENADRKVRRRDCTLATVDHNIPTESRKDF-----ESIDTFIKQADSR--LQVKTLEKNVK 107
                 699****99553344667777.*****************************************55555.....5599999999999..*********** PP

   Aconitase  96 afgirvvppg...qGIvHqvnlEyglalpgktvvgtDSHTtmigglGvlaiGvGgieaeavllgqplelkipkvvgvkltGklkegvtakDlvlavigk 191
                 ++++ ++ +    qGIvH +++E+g++lpg+tvv++DSHT+++g++G la+G+G++e+e+vl++q++ + + k++++++ Gkl++gvt+kDl+l++ig+
  CCD24672.1 108 THNVPYFGMTdprQGIVHTIGPEQGFTLPGTTVVCGDSHTSTHGAFGSLAFGIGTSEVEHVLATQTIIQARSKNMRINVPGKLNPGVTSKDLILHIIGQ 206
                 **88887766666************************************************************************************** PP

   Aconitase 192 lrkkgvvgkvvEffGegvesLsledraTiaNMaaEvGAttglfpvdektleYLkatgreeaavlveaydkaqalf.elaadedaeydkvleldlstlep 289
                 ++++g++g+v+Ef+Ge++esLs+e+r++++NM++E+GA++g++++de+t++Y k  gr+ a+ +++++ ka +++ +l++de+a++d  +++ ++++ p
  CCD24672.1 207 IGTAGGTGCVIEFAGEAIESLSMEARMSMCNMSIEAGARAGMIKPDETTFKYTK--GRPLAP-KGAEWVKAIKYWkTLHSDEGAHFDYDITIKAEDVMP 302
                 ******************************************************..******.7***********88********************** PP

   Aconitase 290 svagpkrPqdavplselvk.k.efkeelekeaaekaley.klkegtklkdgkvdiaaigSCTNssnedvraaagllakavekglkvkpgv.ktsvaPGS 384
                 +++++++Pqda+p+s++v+ + + ++ ++k+ +e+al+y +l+++t+lk +k+d+++igSCTN+++ed+r+a ++++     g+k +++v +++v+PGS
  CCD24672.1 303 TITWGTSPQDALPISGSVPdPaKENDPIRKAGMERALKYmGLEPNTPLKSIKIDKVFIGSCTNARIEDLRNASAVVK-----GHKLADNViQAMVVPGS 396
                 ******************97557889999************************************************.....*******99******** PP

   Aconitase 385 evvkayleaeGlleiLekaGfevvgagCstCig.nsdrleegeaivsssNRNFegRqgpntrayLaSPelvvaaAlaG 461
                 + vka++e+eGl++i+e+aGfe+++agCs+C+g n+d l+++e+++s+sNRNFegRqg+ +r++L+SP++++aa + G
  CCD24672.1 397 GLVKAQAEREGLDKIFEEAGFEWREAGCSMCLGmNPDILQPHERCASTSNRNFEGRQGALARTHLMSPAMAAAAGIYG 474
                 *************************************************************************99977 PP

>> Aconitase_C  Aconitase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.0   0.0   2.4e-48   2.1e-44       1     130 [.     551     677 ..     551     678 .. 0.97

  Alignments for each domain:
  == domain 1  score: 151.0 bits;  conditional E-value: 2.4e-48
                  CCCCCCCTT--CHHHHSTGGGCCGHCCHHHCCCGGTTTCCCCTTTSBBSEEEETTTTEEEEHHHHHHHHHHTT--EEEE--SSBTBS---THHHHHHH CS
  Aconitase_C   1 mekllklkGlttedeksnvdtdlkipkqfegtianiglgnelveekrankttdlddgekedvvdaaerykkegaklvviagknfGeGSSRehAAkalr 98 
                  m+ + kl Gl+++++k+nvdtd++ipkqf++ti+++gl+n l++e r+ k+++ +d+e+ d+v+++++++  +a+++v++g+nfG+GSSRehA++al+
   CCD24672.1 551 MKPFVKLDGLAAPLDKANVDTDAIIPKQFLKTIKRTGLKNGLFYELRFVKDEQGKDKET-DFVLNVNPWR--KAEVLVVTGDNFGCGSSREHAPWALK 645
                  68899*************************************************99766.**********..9************************* PP

                  HTTEEEEEES-B-HHHHHHHHHTT-EEEEEST CS
  Aconitase_C  99 llGikaviaeSFerIfennliknglLplefke 130
                  ++Gik +ia+SF++If+nn++knglLp+++++
   CCD24672.1 646 DFGIKSIIAPSFGDIFYNNSFKNGLLPIRIEQ 677
                  *****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5405.59
//
Query:       CCD24673.1  [L=1008]
Description: hypothetical protein NDAI_0D03590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1008 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 6829.72
//
Query:       CCD24674.1  [L=537]
Description: hypothetical protein NDAI_0D03600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-40  139.3   0.2    2.6e-40  138.2   0.2    1.6  1  ATE_C     Arginine-tRNA-protein transferase, C terminus
    1.4e-25   89.5   2.5      3e-25   88.4   2.5    1.6  1  ATE_N     Arginine-tRNA-protein transferase, N terminus


Domain annotation for each model (and alignments):
>> ATE_C  Arginine-tRNA-protein transferase, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   0.2   2.9e-44   2.6e-40       1     128 [.     178     320 ..     178     325 .. 0.95

  Alignments for each domain:
  == domain 1  score: 138.2 bits;  conditional E-value: 2.9e-44
       ATE_C   1 ekfeLykkYqkavhgdkeeksseesfarflvdsplseeei.................sakekklgsyhqeyrldgkLvavgvvDvlpeglSsvYffydp 82 
                 ek+ L+++Yq+avh+d ++  s ++f+rfl++ p++++ +                  ++++  g++h +y+ d+kL+a++v+D+lp+g+SsvYf++dp
  CCD24674.1 178 EKYLLFARYQEAVHKDFDH--SPKGFERFLCHCPFTNTGTeeqwkqlnearihdiriASQKEVSGPVHECYYYDDKLIALSVLDILPTGISSVYFIWDP 274
                 7999**********99877..6788*********999888999*************99999999*********************************** PP

       ATE_C  83 dyaklslGklsiLreielarelglkyyylGYyiescpkmrYKaeyk 128
                 dy+++slGk+s+Lre++l+++++ kyyylG y ++cpkm+YK+ y 
  CCD24674.1 275 DYRDWSLGKISALRELALVERESKKYYYLGLYADDCPKMNYKGAYG 320
                 *********************************************8 PP

>> ATE_N  Arginine-tRNA-protein transferase, N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   2.5   3.4e-29     3e-25       2      80 ..      23     119 ..      22     120 .. 0.97

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 3.4e-29
       ATE_N   2 sCgYckgkkerkavssekesa..................tvgvsaesltvedyqelldrGfRRsGkylYkpdckrtCcpqytiRldveefkpsksqk 80 
                 +CgYckg+k++ ++ ++ es+                  ++g++a +++v++y++l++ GfRRsG+++Y++++ r+Cc++ytiR+++++fk++k+ k
  CCD24674.1  23 DCGYCKGEKKDPRYFFALESFfekyrtdvlkdklqiehsSIGFQAMKMNVRQYERLCNLGFRRSGDFIYRTEMLRNCCRLYTIRTSLKQFKITKEFK 119
                 8************999999999************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1101  (0.0614089); expected 358.6 (0.02)
Passed bias filter:                      696  (0.0388198); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3650.61
//
Query:       CCD24675.1  [L=190]
Description: hypothetical protein NDAI_0D03610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-20   72.1   7.0    2.9e-19   69.3   3.0    2.3  2  HSCB_C     HSCB C-terminal oligomerisation domain
    2.5e-08   33.9   0.8    2.5e-08   33.9   0.8    2.9  3  DnaJ       DnaJ domain
  ------ inclusion threshold ------
        0.1   12.7   0.2        0.1   12.7   0.2    2.1  3  Cnl2_NKP2  Cnl2/NKP2 family protein
       0.17   12.5   3.1        0.3   11.7   1.7    2.0  2  DUF5398    Family of unknown function (DUF5398)


Domain annotation for each model (and alignments):
>> HSCB_C  HSCB C-terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.1     0.009        41      43      76 .]      61      93 ..      37      93 .. 0.83
   2 !   69.3   3.0   6.4e-23   2.9e-19       2      76 .]     107     178 ..     106     178 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.009
                HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHH CS
      HSCB_C 43 eaeleeafekkdleaaadllrrlrYlekikeeik 76
                +++ ++++ +k +  +++ lrr +Y+ k++++i+
  CCD24675.1 61 IDKQSTLL-NKAYHVLKEPLRRSQYMIKLLHDID 93
                44555666.668899***************9996 PP

  == domain 2  score: 69.3 bits;  conditional E-value: 6.4e-23
                 -HHHHHHHHHHHHHHHCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHH CS
      HSCB_C   2 dpefLmevMelrEeleeaeeaadkeeleelkaeveerieeleaeleeafekkdleaaadllrrlrYlekikeeik 76 
                 dp++Lm+v +++E+l+e+   +d+++++++++e++eri+++e++l +afe+kd+++a +l+++l+Y+++++ +ik
  CCD24675.1 107 DPDILMKVIDIHEQLMEI---EDENDVNKVRQENQERIDAIEKKLTDAFERKDFDTAIKLTVELKYWSNVAYAIK 178
                 9*****************...4779************************999*****************998886 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.23     1e+03      21      33 ..      18      30 ..      12      35 .. 0.86
   2 !   33.9   0.8   5.5e-12   2.5e-08      13      62 ..      36      84 ..      31      84 .. 0.94
   3 ?    0.0   1.5      0.22   9.6e+02      31      63 .]     126     158 ..     126     158 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.23
                HHHHHHHHSTTTS CS
        DnaJ 21 YrklalkyHPDkn 33
                +++l  k  PDk+
  CCD24675.1 18 FYELFPKTFPDKK 30
                7899999****98 PP

  == domain 2  score: 33.9 bits;  conditional E-value: 5.5e-12
                -HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHH CS
        DnaJ 13 sedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqY 62
                ++ +++k+Yr l  ++HPD   k+ e++++   +n+Ay vL++p +R+qY
  CCD24675.1 36 DQTKLRKEYRALQAQHHPDMV-KEGEIDKQSTLLNKAYHVLKEPLRRSQY 84
                67889**************99.7789***********************9 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.22
                 TTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  31 DknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 D+n+ ++  +e+ ++i +  + L+d+ +Rk++D
  CCD24675.1 126 DENDVNKVRQENQERIDAIEKKLTDAFERKDFD 158
                 5566666777788899999999****9999998 PP

>> Cnl2_NKP2  Cnl2/NKP2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.2   2.3e-05       0.1      20      51 ..      14      53 ..       5      59 .. 0.72
   2 ?   -3.3   0.0       2.3     1e+04      53      61 ..      96     104 ..      91     105 .. 0.79
   3 ?   -2.4   0.1       1.2   5.4e+03      47      57 ..     135     145 ..     122     152 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
   Cnl2_NKP2 20 sleqFkklFPrk.krssPq.......ikrLYrdLqrqrsa 51
                +l++F +lFP++   ++P        +++ Yr Lq+q++ 
  CCD24675.1 14 TLTTFYELFPKTfPDKKPIwsidqtkLRKEYRALQAQHHP 53
                67888888888843334445555556***********985 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.3
   Cnl2_NKP2  53 ldkVranIe 61 
                  d+V+++I+
  CCD24675.1  96 QDSVKEKIT 104
                 588999996 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.2
   Cnl2_NKP2  47 rqrsavldkVr 57 
                 +++++++d+++
  CCD24675.1 135 QENQERIDAIE 145
                 34445555555 PP

>> DUF5398  Family of unknown function (DUF5398)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.6   2.7e+03      55      71 ..      59      76 ..      44      84 .. 0.67
   2 ?   11.7   1.7   6.7e-05       0.3      23      59 ..     123     159 ..     112     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.6
     DUF5398 55 eefdkfgtlLh.GYtall 71
                 e dk+ tlL+  Y  l 
  CCD24675.1 59 GEIDKQSTLLNkAYHVLK 76
                467788887751455544 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 6.7e-05
     DUF5398  23 dlkdvkkakeikqkvesriqkikeaLReGenkeefdk 59 
                 +++d    ++++q+ ++ri  i++ L +  ++++fd 
  CCD24675.1 123 EIEDENDVNKVRQENQERIDAIEKKLTDAFERKDFDT 159
                 455666778899***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1501  (0.0837191); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1421.80
//
Query:       CCD24676.1  [L=273]
Description: hypothetical protein NDAI_0D03620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-69  233.1   0.8    4.7e-69  231.8   0.8    1.6  1  CK_II_beta  Casein kinase II regulatory subunit
  ------ inclusion threshold ------
        0.3   11.2   2.9       0.57   10.3   2.9    1.3  1  DUF4530     Domain of unknown function (DUF4530)


Domain annotation for each model (and alignments):
>> CK_II_beta  Casein kinase II regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.8   0.8   5.3e-73   4.7e-69       1     182 []      24     236 ..      24     236 .. 0.95

  Alignments for each domain:
  == domain 1  score: 231.8 bits;  conditional E-value: 5.3e-73
  CK_II_beta   1 sWiswflslkgneyfvevdedfiedkfnltgLseevpnykealelildv............................eeeeeleeseksevessaelLY 71 
                 +Wi +f+s+ g+eyf+ev+++fied+fnlt L +evp+y++al++ild                             +++++    ++s +e++ae+LY
  CCD24676.1  24 EWIPSFCSRFGHEYFCEVPHEFIEDDFNLTSLAQEVPHYRKALDMILDLedisddeedeeeeeedqdmlgengsqnsSSKRKPPIVNRSIIEHAAEQLY 122
                 6***********************************************************************9986655556667899*********** PP

  CK_II_beta  72 gliHaryiltkkglakmlekykkkefgrCprvlCekqkvLPvGlsdkpgektvklyCpkCedvYspkssrsrsidGafFGttfphlllltypele...p 167
                 gliHaryiltk+gl++m+ek+++kefg Cpr++C+++++LP+Glsd++g+ tv+lyCp+C+d+Y p+ssr   ++Gaf+Gt+fp ++l++++ele   +
  CCD24676.1 123 GLIHARYILTKQGLQSMAEKFDHKEFGICPRYHCSGMQLLPCGLSDTIGKYTVRLYCPSCQDIYLPQSSRFLCLEGAFWGTSFPGVFLKHFKELEeyvE 221
                 ********************************************************************9888******************999875557 PP

  CK_II_beta 168 kkskekyepriyGfk 182
                 +k+ke+ye +++Gf+
  CCD24676.1 222 RKTKETYELKVFGFR 236
                 8999**********7 PP

>> DUF4530  Domain of unknown function (DUF4530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   2.9   6.4e-05      0.57      72     109 ..      52      89 ..      49      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.4e-05
     DUF4530  72 lcslglemgalreelvtileeeeeeeeeeeeeeeeepe 109
                 l sl+ e+  +r+ l+ il+ e+ +++ee+eeeeee +
  CCD24676.1  52 LTSLAQEVPHYRKALDMILDLEDISDDEEDEEEEEEDQ 89 
                 889*****************999888888887777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2039.10
//
Query:       CCD24677.1  [L=238]
Description: hypothetical protein NDAI_0D03630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-49  165.9   4.4    7.7e-49  165.6   4.4    1.1  1  CHD5       CHD5-like protein
    0.00092   19.7   3.3    0.00092   19.7   3.3    2.1  2  DUF16      Protein of unknown function DUF16
     0.0075   15.5   0.5       0.01   15.1   0.5    1.2  1  DDE_Tnp_2  Archaeal putative transposase ISC1217
  ------ inclusion threshold ------
       0.79    9.5   8.4          1    9.2   3.2    2.4  2  DivIC      Septum formation initiator


Domain annotation for each model (and alignments):
>> CHD5  CHD5-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.6   4.4   1.7e-52   7.7e-49       3     158 ..      11     191 ..       9     192 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.6 bits;  conditional E-value: 1.7e-52
        CHD5   3 ifllvlvtkllntigkstiknllwllylkkvssksakeqrklkkellklkeelnsisaqDefAkWaKlnRkldkleeeleklkkelsaskssfkkklkk 101
                  +++v+++k+l++ ++++ ++++ ++++++v++ks+ +++k+ +e+l+l+ee+++isaqD++AkW+K+nRkl+kl+ee+++l  +l++++ss++k++kk
  CCD24677.1  11 SLVFVTINKFLQYSTSYHASWMS-KIIQHSVHKKSYDDYHKKLQERLELQEENTTISAQDNYAKWTKNNRKLEKLNEEIKALGIQLKSQQSSIEKQMKK 108
                 689*******************7.566788999****************************************************************** PP

        CHD5 102 vllvlttvpqlvlkfwyrktpvfylpkg.wfPllvewlls.....lplaplg....................sVSltiWlfac 158
                 ++lv++t+p+++lk+w++k pv+ylp++ +fP+++ +++s     l+l+pl+                    sVSl+iWl+a+
  CCD24677.1 109 FKLVTLTAPFIILKLWKGKFPVYYLPHSdMFPKIIGGVMSqgwlyLALLPLQilrgsskvetqgeesmaiqvSVSLGIWLWAL 191
                 *********************************************77777766669999999999999999**********98 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   3.3   2.1e-07   0.00092      20      89 ..      40     113 ..      13     125 .. 0.65
   2 ?   -1.0   0.0      0.55   2.4e+03      54      71 ..     165     182 ..     156     210 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.1e-07
                 -BHHHHHHB-..BHHHH..HHHHHHHH............HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHH CS
       DUF16  20 VTrkqlnefkdsnkqrL..kkieakvd.........klgeqinkleqkvekqgekikelkveqkaqgeelnkvdetlelil 89 
                 V +k ++++ +  ++rL  ++ +++++         k        + k ek++e+ik l  + k q+ +++k+ + ++l+ 
  CCD24677.1  40 VHKKSYDDYHKKLQERLelQEENTTISaqdnyakwtK-------NNRKLEKLNEEIKALGIQLKSQQSSIEKQMKKFKLVT 113
                 7899999999986666510555556665544444444.......5555555555555555555555555555555555543 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.55
                 HHHHHHHHHHHHHHHHHH CS
       DUF16  54 eqkvekqgekikelkveq 71 
                   kve+qge+ + ++v +
  CCD24677.1 165 SSKVETQGEESMAIQVSV 182
                 456667776666555544 PP

>> DDE_Tnp_2  Archaeal putative transposase ISC1217
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.5   2.3e-06      0.01     232     295 ..      32      98 ..      13     123 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.3e-06
   DDE_Tnp_2 232 lveyldtvikllvlddykk..dgrrylfstdlndtdediittW.enrWdievlirelkalGledssf 295
                 +  +++  ++ +  ddy+k  ++r+ l   ++  +++d  + W +n  ++e+l  e+kalG++  s 
  CCD24677.1  32 MSKIIQHSVHKKSYDDYHKklQERLELQEENTTISAQDNYAKWtKNNRKLEKLNEEIKALGIQLKSQ 98 
                 444455555566667776523578999999*************667889************975443 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.7    0.0091        41      12      39 ..      41      68 ..      38      73 .. 0.90
   2 ?    9.2   3.2   0.00023         1      20      67 ..      65     111 ..      62     113 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0091
                XXXXXXHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC 12 gkkgllaykqlkqeiaalqaelaklkae 39
                +kk++ +y+++ qe+ +lq+e+ +++a+
  CCD24677.1 41 HKKSYDDYHKKLQERLELQEENTTISAQ 68
                689999****************999987 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00023
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXX CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerARselgl 67 
                  + + ++a+ ++++ kl + nee +a   +Lks+++ ie++ + ++ l
  CCD24677.1  65 ISAQDNYAKWTKNNRKLEKLNEEIKALGIQLKSQQSSIEKQMK-KFKL 111
                 5667889999*******************************88.7666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2148  (0.119806); expected 358.6 (0.02)
Passed bias filter:                      688  (0.0383736); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 1873.42
//
Query:       CCD24678.1  [L=698]
Description: hypothetical protein NDAI_0D03640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-149  498.3  48.0   5.8e-147  490.6  44.0    2.1  2  STT3      Oligosaccharyl transferase STT3 subunit


Domain annotation for each model (and alignments):
>> STT3  Oligosaccharyl transferase STT3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  490.6  44.0  3.2e-151  5.8e-147      10     488 .]       3     453 ..       1     453 [. 0.98
   2 !    9.5   0.1   2.3e-05       0.4     448     485 ..     474     512 ..     465     514 .. 0.93

  Alignments for each domain:
  == domain 1  score: 490.6 bits;  conditional E-value: 3.2e-151
                 HCCCCCHCC.CCCCCCT--S--SSCHHHHHHHCCCHHHT-C.....CCHHSSEETTSSTTT-EEESTTCCHCCC.CHHHHHHCCHHC.....HHHHHHH CS
        STT3  10 ialvavasrdlFtdedglsylsefDpYYnyRltenllnnGfpGdvvikkknwfdhsqyyPpGsrvdygplivlLamlasaiinhsld.....vsirevc 103
                 i+++av++r lF++++++s+++efDp++n+R+t++l+nn+f     +++ nwfd++++yP+G rv++g+l+++L m++sa+i+h l+     ++ir++c
  CCD24678.1   3 IFGAAVSAR-LFSVIRFESIIHEFDPWFNFRATKYLINNSF-----YDFLNWFDDRTWYPLG-RVTGGTLYPGL-MTTSALIWHTLRkiglpIDIRNIC 93 
                 7899999**.*******************************.....****************.***********.************************ PP

                 HCCHHHHHHHHCHHHHHHHHHHS-CCCHHHHHHHCCC-CCCCCTTSTT--STCCCCHHHHHHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHTTSCCGG CS
        STT3 104 lwlpallgsLlaIpiyflvrelksdiaGllAAlllaiaPgYlsrtvaGfyDtdmfeivlllfvlffflkaiktksnkislaviaaliiflivlaWggya 202
                 +++++++++++aI++y+l++e+k+  aG+lAA+++ai+PgY+sr+vaG yD+++++i+ll+++++f++k++kt+s  i +++ aal++f++v+aWggy 
  CCD24678.1  94 VLFAPAFSGVTAIATYYLTKEIKDSSAGVLAAAFIAIVPGYISRSVAGAYDNEAIAITLLMVTFMFWIKGQKTGS--ILYSSFAALFYFYMVSAWGGY- 189
                 ***************************************************************************..*********************. PP

                 HHHHCCHHHHHHHHHCTTTS-CCHHHHHHHHHHHHHHH..CCCCCCCTTCHHHSTTTCHHCCCCHHHHHHHHCCCHHC..CCCCCHHCCCHHTT.HHHH CS
        STT3 203 iliyallllfilalLiigrfelklkiavtfsviiaflviaiivllflgfqvvavseiigalgifgllqlvafgsvvvlvaelkfyqfislfqpgilsev 301
                 ++i++l++++i++l+++grf++kl++a++++ ii++++  +++++f+gf +++++++++alg+fgllq+va+g++v++  +l   +f+ ++ ++ l ++
  CCD24678.1 190 VFITNLIPFHIFLLILMGRFTSKLYVAYNTWFIIGTVA--SMQIPFVGFLPIRSNDHMAALGVFGLLQIVALGDFVKS--KLPPRKFKIVMIVS-LLII 283
                 **************************************..**************************************..**************.9*** PP

                 TT--GGGHHHHHHHHHHHHCCCCCCTS-----TTHHHHHHHHHS---S--CCHHHCCSSSTTTTCCCHHHCHHCCHHCTCHHHHHHHHHHHHHCCC-SC CS
        STT3 302 lgligevvtalavlglialwlgilyslldleyaklkikiiilvsvwlpvgllaltkglrfliftvPlgiifvgllleflavfvkiysvsqilfsgvvvi 400
                 l+++   +++l+++glia+w+g++ysl+d++yak++i+ii++vs+++pv + a++++++fli+++P+g++++++ l++++vf+++ysv++ +f+gv+v+
  CCD24678.1 284 LAIGIAGLFLLTYMGLIAPWTGRFYSLWDTSYAKIHIPIIASVSEHQPVAWPAFFFDTHFLIWLFPAGVFLLFMDLKDEHVFIIAYSVLCSYFAGVMVR 382
                 *************************************************************************************************** PP

                 HCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT.TTTTHHHTTHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCS CS
        STT3 401 llmltllpvlallaavkiskifstykdekeakikvaakavaptksnglkeslewkantnrdsvvitwwdyghilaveadrpVtfdggs 488
                  lmltl+pv+++ aav++sk+f++y d+ +a+                     +  +  ++ +v+  + ++++l+v++ ++Vt +++s
  CCD24678.1 383 -LMLTLTPVICITAAVALSKVFDVYLDFSSAIDPQRR----------------NLTSLLSRLIVSGTFIFYLYLFVFHCTWVTQTAYS 453
                 .***************************999988622................34699****************************98 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 2.3e-05
                 TTTTHHH.TTHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
        STT3 448 lkeslew.kantnrdsvvitwwdyghilaveadrpVtfd 485
                   e+ +w + nt +d+ v  wwdyg+ +  +adr +++d
  CCD24678.1 474 FREAYYWlRMNTDEDAKVAAWWDYGYQIGGMADRTTLVD 512
                 578999******************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       765  (0.0426683); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4831.21
//
Query:       CCD24679.1  [L=976]
Description: hypothetical protein NDAI_0D03650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-14   51.8  10.6    1.5e-13   50.6  10.6    1.7  1  FYVE      FYVE zinc finger


Domain annotation for each model (and alignments):
>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6  10.6   8.6e-18   1.5e-13       2      67 ..     829     921 ..     828     922 .. 0.73

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 8.6e-18
                 ---...--SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EE......................GGGTEEEEE............EE-HHHHHHH CS
        FYVE   2 kwkddsevkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvall......................ekeaeeksv............rvCkeClael 66 
                 +w +ds+ ++C +C+kkF+l +r+hhCr+CG+++C+++ ++ + l                       +       +            +vC+ Cl+++
  CCD24679.1 829 HWIPDSKRSECLKCHKKFTLCERKHHCRHCGEIFCSEHLRHWLYLDhqanfiistkidlfenvnmnntN-------NnnnsnngggvlcKVCDFCLEKY 920
                 8**********************************9999666654445555555555555555544330.......0233445666677******9987 PP

                 H CS
        FYVE  67 s 67 
                 +
  CCD24679.1 921 E 921
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (976 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2586  (0.144236); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.20u 0.33s 00:00:01.53 Elapsed: 00:00:00.49
# Mc/sec: 6002.72
//
Query:       CCD24680.1  [L=304]
Description: hypothetical protein NDAI_0D03660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.5   0.0       0.24   10.8   0.0    1.3  1  NSs       Rift valley fever virus non structural protein (NSs


Domain annotation for each model (and alignments):
>> NSs  Rift valley fever virus non structural protein (NSs) like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.4e-05      0.24      32     139 ..     128     237 ..     111     246 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 1.4e-05
         NSs  32 vgpccvflmhhrpshevrlrfsdfynvgefpyrvglgdfasnvapppakpfqrlidlighmtls..dftrfpnlkeaiswplgepslaffdlsstrvhr 128
                  g    fl  hr   +v   + d+y      ++  lg f  ++a  p   +     +i +m+l+   ++  p +         e sl +  l+++ +++
  CCD24680.1 128 GGTILSFLYEHRYELDVPKEYIDVYHFYTSHFQKNLGKFMQEIAFNPNSSLVGNDRIIMRMALTyvKYSSCPSFWFQSLESYSEDSLVYEFLTTSGIKK 226
                 577788*****************************************9998877777777766422788889988877788899999999999999999 PP

         NSs 129 nddirrdqiat 139
                 n +ir  ++a+
  CCD24680.1 227 NMQIRCIDLAS 237
                 99999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2100.21
//
Query:       CCD24681.1  [L=329]
Description: hypothetical protein NDAI_0D03670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2396.03
//
Query:       CCD24682.1  [L=385]
Description: hypothetical protein NDAI_0D03680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-146  488.7  47.4   1.7e-146  488.5  47.4    1.0  1  Med3       Mediator complex subunit 3 fungal
     0.0018   18.8  17.6     0.0018   18.8  17.6    2.2  2  DUF3682    Protein of unknown function (DUF3682)
  ------ inclusion threshold ------
       0.21   11.5   0.1       0.21   11.5   0.1    2.3  2  DUF3504    Domain of unknown function (DUF3504)
       0.29   10.2   4.5       0.43    9.6   4.5    1.2  1  FAM199X    Protein family FAM199X
        1.6    8.5   6.5        4.8    6.9   6.5    1.8  1  DUF3464    Photosynthesis affected mutant 68
        2.9    6.4  12.5        3.7    6.1  12.5    1.3  1  Ndc1_Nup   Nucleoporin protein Ndc1-Nup


Domain annotation for each model (and alignments):
>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  488.5  47.4  5.9e-150  1.7e-146       1     405 []      11     385 .]      11     385 .] 0.97

  Alignments for each domain:
  == domain 1  score: 488.5 bits;  conditional E-value: 5.9e-150
        Med3   1 svltaklkLdeLevklakeed..........skakdvvakrikeaedeiLPLrLqfnefiqimaslDeertkekskqekflsirdkvLdLnerlqelss 89 
                 ++lt+kl+Ld+Le++la+++d          s +k+v+a++++e+e++iLPLrL+fn++iq+ma+lD+  ++eks+qe+flsir+++LdL++++qe+s+
  CCD24682.1  11 KLLTPKLTLDQLEDRLAGDIDnldttdlsddSLPKQVIANSLIETEKSILPLRLVFNKLIQTMATLDT--MPEKSQQEMFLSIRNQLLDLYTKIQEIST 107
                 689*****************************************************************..***************************** PP

        Med3  90 dleeLqPLfatveeysktaknkdksfqlLenL.........saynkkGkasaskasvvnstpssaastPtttatPgantktaakslpapnatatigtpt 179
                 d+++LqPLf+t+eeys+  kn++k+f++Le+L         +a+++kG+as+sk+++v++tp+s+++tP++t tPg++t+t+a+++pa     +i+++t
  CCD24682.1 108 DFQHLQPLFGTIEEYSE--KNNTKKFHMLETLkpivepapaTAKATKGDASHSKKKSVAGTPGSVGNTPVGT-TPGSSTGTVAANVPA-----NINANT 198
                 *****************..****************************************************8.**************9.....777777 PP

        Med3 180 ..nsaaaaattatttssqakkPrkPrqtkkaaakaaakaqaqaqaqaqaqqqvlanpnqvqtP....iaanamnnmnamraalpnptpsmlnsvsPtnv 272
                   +s+++aa+t++ttss+akkPrkPrq+kk    aaakaq+q+q+q+++qqq      q+q+P    ia+n+m+nmnam     n+tp m+nsvsP+nv
  CCD24682.1 199 tnTSTTSAASTTQTTSSTAKKPRKPRQNKK----AAAKAQQQQQQQLLQQQQ------QQQIPkqqgIATNPMMNMNAM-----NATP-MMNSVSPSNV 281
                 668999************************....99****************......777777777************.....****.********** PP

        Med3 273 mGtPltnmmsPmaavqlnnaysmqaenqsgqfaqqqsnGdnpnnntnannlplqsdlnlnnitPaniLsmntkgkdqnidldqqqqqqqsqqqpqnqny 371
                 mGtPl+n++sPm+av+++++ys+++++qs+qf+qq++nGd+   ntn+nn+     +n+nnitPaniLsmnt+g++      q++++++sqq+p     
  CCD24682.1 282 MGTPLNNGISPMGAVMAGGFYSQPPGSQSQQFDQQMNNGDH---NTNNNNF-----QNMNNITPANILSMNTVGDP------QSRMASSSQQYP----- 361
                 *****************************************...*******.....9*******************......************..... PP

        Med3 372 smnmnmnndnnngkeldslDlnnLdLssLnmDfL 405
                      +nn+nnn     +lDlnnLdLssLnmDfL
  CCD24682.1 362 -----TNNNNNN-----TLDLNNLDLSSLNMDFL 385
                 .....8999999.....9***************8 PP

>> DUF3682  Protein of unknown function (DUF3682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8  17.6     6e-07    0.0018      21     125 ..     143     254 ..     124     257 .. 0.60
   2 ?   -1.5   1.7       1.1   3.2e+03      53      67 ..     342     356 ..     269     369 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 6e-07
     DUF3682  21 pspaappsapaapgvdss...agssdGeAgssgsnssnttGdsstgdqtpaaaa...an..nss..ppegpagttsgtghtrqeeeEeee.enekqqqs 108
                 p+pa    ++ a++ d+s     s  G+ gs g+++  tt  sstg  + ++ a   an  n+s   +  +++tts+t ++ ++   + +   + qqq 
  CCD24682.1 143 PAPA----TAKATKGDAShskKKSVAGTPGSVGNTPVGTTPGSSTGTVAANVPAninANttNTSttSAASTTQTTSSTAKKPRKPRQNKKaAAKAQQQQ 237
                 2222....223555554411266789999*****************86644322222441133311455677889998877555544444244555555 PP

     DUF3682 109 dEaQvqqhqqhehpaes 125
                 +    qq+qq   p ++
  CCD24682.1 238 QQQLLQQQQQQQIPKQQ 254
                 55556777777777665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
     DUF3682  53 ssnttGdsstgdqtp 67 
                 s nt+Gd++    ++
  CCD24682.1 342 SMNTVGDPQSRMASS 356
                 567777776655544 PP

>> DUF3504  Domain of unknown function (DUF3504)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     7e-05      0.21      26      91 ..      93     158 ..      81     174 .. 0.78
   2 ?    0.1   4.0      0.22   6.6e+02      64     102 ..     207     250 ..     188     258 .. 0.37

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 7e-05
     DUF3504  26 ntllyfntkyfglrtveeHlkLsfsnverqtkknprekltylryleps.......esekkteskkskkeeees 91 
                 n ll + tk   ++t  +Hl+  f+++e  ++kn+++k  +l++l+p        +       k  k ++++s
  CCD24682.1  93 NQLLDLYTKIQEISTDFQHLQPLFGTIEEYSEKNNTKKFHMLETLKPIvepapatA-------KATKGDASHS 158
                 677888999999***********************************966555442.......3333332222 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.22
     DUF3504  64 ltylryleps....esekkteskkskkeeees.kvveqaensen 102
                 +++ +++ ++    ++++++++   k +++++ + ++q+++++ 
  CCD24682.1 207 ASTTQTTSSTakkpRKPRQNKKAAAKAQQQQQqQLLQQQQQQQI 250
                 22222222212222222222222222222222244555555554 PP

>> FAM199X  Protein family FAM199X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.5   0.00014      0.43     206     289 ..     162     241 ..     133     263 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00014
     FAM199X 206 ssastsgvsaasssnasmvssassstasvgssa.ansaanisrahsdsnlssaaerirdskkrskqrklqqkalrkrqlkeqrqa 289
                 s a t g    s  n+ + ++  sst++v++++ an  an + + + s+ s++      +kk  k r  ++ka  k q ++q+q 
  CCD24682.1 162 SVAGTPG----SVGNTPVGTTPGSSTGTVAANVpANINANTTNTSTTSAASTTQTTSSTAKKPRKPR-QNKKAAAKAQQQQQQQL 241
                 2222222....33344444444555555555443333333333333322222222222223322222.23344444444444432 PP

>> DUF3464  Photosynthesis affected mutant 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   6.5    0.0016       4.8      10      54 ..     209     253 ..     196     293 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0016
     DUF3464  10 pkkkrkkkpkkkkkskkakkeekekakeeekkdkeekeeaaiPev 54 
                 +++++++++kk +k++++kk+ ++++++++++  +++++++iP++
  CCD24682.1 209 TTQTTSSTAKKPRKPRQNKKAAAKAQQQQQQQLLQQQQQQQIPKQ 253
                 234445566666666666666666667777777788888889975 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  12.5    0.0012       3.7     364     467 ..     147     253 ..     112     367 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0012
    Ndc1_Nup 364 kapknkasapvkelprlsksplkkkddeifgn....sltaeaspkssssskegvekalsslakspgqs.psptarls...prarkllekaksrllskeq 454
                 +a+++k  a+ +++++++ +p    +   +g+    s+ + a++ + +   ++++++++s+a+++ q+ +s     +   pr+++  +ka+ ++++++q
  CCD24682.1 147 TAKATKGDASHSKKKSVAGTPGSVGNT-PVGTtpgsSTGTVAANVPANINANTTNTSTTSAASTT-QTtSS-----TakkPRKPRQNKKAAAKAQQQQQ 238
                 233333333444444444333333222.2232343211111222222122222222222222222.22122.....12235555555555555555555 PP

    Ndc1_Nup 455 kealsestikkk..v 467
                 ++ l+++++++    
  CCD24682.1 239 QQLLQQQQQQQIpkQ 253
                 555555544444330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3137  (0.174968); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.81u 0.33s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 2446.61
//
Query:       CCD24683.1  [L=811]
Description: hypothetical protein NDAI_0D03690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.5e-172  572.3   0.4     4e-171  570.1   0.4    1.8  1  Glyco_hydro_63   Glycosyl hydrolase family 63 C-terminal doma
    1.4e-63  215.1   0.2    2.1e-63  214.5   0.2    1.2  1  Glyco_hydro_63N  Glycosyl hydrolase family 63 N-terminal doma
     0.0014   17.7   0.0     0.0025   16.8   0.0    1.3  1  GDE_C            Amylo-alpha-1,6-glucosidase
  ------ inclusion threshold ------
      0.022   14.8   0.0       0.11   12.5   0.0    2.3  1  MHCassoc_trimer  Class II MHC-associated invariant chain trim
      0.075   12.8   1.5       0.53   10.0   0.1    2.6  2  DUF3841          Domain of unknown function (DUF3841)


Domain annotation for each model (and alignments):
>> Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  570.1   0.4  1.1e-174    4e-171       4     490 ..     309     809 ..     306     810 .. 0.97

  Alignments for each domain:
  == domain 1  score: 570.1 bits;  conditional E-value: 1.1e-174
                     HHHHHHHHHHHHHHHHHHHHH----S--S-HHHHHHHHHHHHHHHHHT-EEEEEEEEE--SS---TT--S---........EEEEEE--SBTTTB CS
  Glyco_hydro_63   4 eelseklekkkkefeekfekkFklkekldlekeelklakealsnllGgigyfyGdslvkresvleedefvkyk........paeLftavPsRpfF 90 
                     +e+s+ ++++ +e++ kf+k+F+++++     e++++a e+lsnllGgigyf+G ++++r +v++ed+f+++k        p +Lft+vPsR+ F
      CCD24683.1 309 NEISSLITSALNEINIKFDKIFTIDSE-----EKRNFALETLSNLLGGIGYFHGTQIIDRTTVFDEDQFQEIKlingkeegPYSLFTSVPSRSKF 398
                     6789999***************99877.....899************************************************************ PP

                     -SEEHHHHHHHHHHHHHH-HHHHHHHHHHHHTT--TT----SEE--HHHHHTTS-GGGTEE-TT-----HHHHHHHHHHHHHH............ CS
  Glyco_hydro_63  91 PRGFlWDeGFhqllilkwdvdltleilasWldlinedGWipReqilgaearskvPeefvvqkpeianPPtlllalkklleklk............ 173
                     PRGF+WDeGFh+l+i+++d dl++ei+asW+dli+edGW++Re ilg+ears+vP+ef+vq+p+ianPPtllla++++l++++            
      CCD24683.1 399 PRGFYWDEGFHLLQIMEYDLDLAFEIMASWVDLIDEDGWVAREVILGDEARSRVPAEFTVQSPKIANPPTLLLAFSEMLQRVTgnvdnfhcdest 493
                     *********************************************************************************************** PP

                     ..........---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTB---STT..................B--TT--SS.......--GGGS-TTS CS
  Glyco_hydro_63 174 ..........lekvsekekeklleflkklyprlkkwfewfrktqkGkleet..................yrWrGRdatakrelnpktLasGlDDy 240
                                 +  e++++ ++e+++k+yp+l k+++wfr+tqkG ++e+                  ++W GR+at       ++L+sGlDDy
      CCD24683.1 494 eddtigdftqDGNRLENNPDLIKEYARKVYPKLLKHYNWFRRTQKGVIDEYsdifeeegiwdsihkdevFKWVGRTAT-------HCLPSGLDDY 581
                     ********986678999*************************************************************.......********** PP

                     ---SS--TT-B-HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTEETTTTEE-EEEE-T.....................TT CS
  Glyco_hydro_63 241 PRashpseaelhvDlrsWvalaakslksiaellgeeeekekyaktekelsenleklhwseeekayaDlgvhtekvklkkkevegqkkelvrvvee 335
                     PRa  p+ aelhvD +sWv+++++s+k+ia++l++e++++ ya++e+++ enle+lhw+ +++ y+D+++++                     e 
      CCD24683.1 582 PRAPTPDIAELHVDALSWVGIMTRSMKQIANILNQENDEKLYAQIESNIIENLETLHWNPKSGSYCDITIDE---------------------EY 655
                     **********************************************************************98.....................56 PP

                     SS-EEEE---BHHHHHHHHTT-S-TT-THHHHHHHHHH-TTTTEETTEEBSB-TTSTTTT-.....TT-SSSS-B-HHHHHHHHHHHHHH-.... CS
  Glyco_hydro_63 336 epelqlvealGYvslfPlllklldadsekleklldlikdpeelwsdyGlrslskksslygkrntehdenYWrgpiWininylilsalkhys.... 426
                      ++++++++ GY+sl+P+ lkl+++ds++l+k+++li d+++l+s++G+ slsk+++++g+      enYWrgpiW+ninyl+l+alk+y+    
      CCD24683.1 656 GDSREFICHDGYISLLPFALKLIPKDSPNLDKVVSLIADEDKLFSPFGILSLSKQDEYFGR-----GENYWRGPIWMNINYLVLDALKYYYpeit 745
                     78999********************************************************.....************************98766 PP

                     --SS-.--HHHHHHHHHHHHHHHHHHHHHHHTSS--SEE-TTT--EESSSS-TTGGGGHHHHHH CS
  Glyco_hydro_63 427 kvegpykekakeiykeLrsnlvnnivkqyketGfvweqYddktGkgkgakeFtGWtslvvlima 490
                     +++  ++  a+++ +eL + l++n+++ +k++G+++e+Y++++G+g+g+++FtGWt+l+v+i++
      CCD24683.1 746 STQKSKRTPAAKLCNELSNRLIKNVYRVWKHSGYCYENYSPIDGHGMGTEHFTGWTALIVNILG 809
                     55556677899**************************************************986 PP

>> Glyco_hydro_63N  Glycosyl hydrolase family 63 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.5   0.2   5.9e-67   2.1e-63       2     218 ..      36     251 ..      35     264 .. 0.87

  Alignments for each domain:
  == domain 1  score: 214.5 bits;  conditional E-value: 5.9e-67
  Glyco_hydro_63N   2 LlWGpYrpnlYfGlrpRipks..lltGLmWfkvddyasvqkklrhtceqgdglkkygWeeyDgrtgGkqtikDkennldlttsfvKvkdgegGs 93 
                      LlWGpYr+n+YfG+ pR++++  +++GLmWf+++ +++++ ++rh+++++d++kkygW+ +D+r gG+++i+D+enn++l  sfvK++dg   +
       CCD24683.1  36 LLWGPYRSNCYFGITPRYIDEspFVMGLMWFDSHLTNGIS-SMRHFVDENDRMKKYGWNAFDPRIGGEEVIIDEENNVNLSLSFVKSHDGL--N 126
                      9*****************88778*****************.9*************************************************..* PP

  Glyco_hydro_63N  94 WavrvkgkpredakkaktsvvfYiglegegslele.eedekglegdvkleGeskelgefkleitegpktn.khpesnhkse.kekplsktlvls 184
                      Wa+rvkgkp++ +kk++ts+v+Y++++g+++ +   ++     e++++l+G+s++lg+++++i+++++   k p+ ++ +  +  ++s++ +ls
       CCD24683.1 127 WALRVKGKPLDLNKKSTTSIVLYMQQQGDANTNELlKT---RDEEHFVLKGKSTQLGKYDISIKDNEGRYyKDPTLKSMKIaEGADCSQMSHLS 217
                      ***************************97543322222...236789******************876663445444444434466******** PP

  Glyco_hydro_63N 185 lkvpdenvwkakdillselkesvqaliekygkek 218
                      l+vpd++ wka+di+++ + +s+++++++ g+ +
       CCD24683.1 218 LNVPDHESWKARDIFQTIIGDSIKDIVQEQGSMD 251
                      ****************************888763 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.9e-07    0.0025     163     335 ..     582     752 ..     572     781 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.9e-07
       GDE_C 163 PRdGkaveinaLwyaaL.......kileelaekalgeakkssykelaekikesfekkFwdeaaaavakreilaDvlkssee.kdlslRpNf....lial 249
                 PR++ + +i  L  +aL       ++++++a+   +e++++ y+++ ++i e++e+ +w+      +k++ + D+   +e  +  ++ +      l+ +
  CCD24683.1 582 PRAPTP-DIAELHVDALswvgimtRSMKQIANILNQENDEKLYAQIESNIIENLETLHWN------PKSGSYCDITIDEEYgDSREFICHDgyisLLPF 673
                 555555.6666677777333334455666666555559999*******************......777777776555554355566665411113333 PP

       GDE_C 250 slapellseekakkvleka..eeeLltplGlktLdpedpeYkgnYdgsedsrdaaYHqGtvWvwllgsyveallkfgeklgkskeale 335
                 +l+  + ++ + +kv++ +  e +L  p+G+ +L+++d  + g        r  +Y  G++W+      ++al +   ++++++++ +
  CCD24683.1 674 ALKLIPKDSPNLDKVVSLIadEDKLFSPFGILSLSKQDEYF-G--------RGENYWRGPIWMNINYLVLDALKYYYPEITSTQKSKR 752
                 444444455567788776633679************99644.3........5667999999998777777887777766555555433 PP

>> MHCassoc_trimer  Class II MHC-associated invariant chain trimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.2e-05      0.11       5      35 ..     608     638 ..     604     644 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.2e-05
  MHCassoc_trimer   5 dqvkhlLlksdPlkvypelkeslleNlkeLk 35 
                      +q+ ++L +++  k y +++++++eNl++L+
       CCD24683.1 608 KQIANILNQENDEKLYAQIESNIIENLETLH 638
                      7999************************996 PP

>> DUF3841  Domain of unknown function (DUF3841)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2      0.13   4.5e+02     118     163 ..     296     338 ..     274     348 .. 0.74
   2 ?   10.0   0.1   0.00015      0.53      16      71 ..     503     561 ..     494     574 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.13
     DUF3841 118 feeelekygvneaeavtsigkfypelkkkiikSWerlFdakeekee 163
                 f+   +k+++   e +++i+++  +  ++i   ++++F++++e++ 
  CCD24683.1 296 FNSAQSKQRI---ESYNEISSLITSALNEINIKFDKIFTIDSEEKR 338
                 4555555555...666667779999999999999*****9998875 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00015
     DUF3841  16 ktg.vliakkeyieekyeeiaelfleaYdWlvkeakkrvkkpeev..eypiWvwvreka 71 
                 ++g +l+++   i+e+ +++ + +l++Y+W+++  k ++++ +++  e  iW ++++++
  CCD24683.1 503 QDGnRLENNPDLIKEYARKVYPKLLKHYNWFRRTQKGVIDEYSDIfeEEGIWDSIHKDE 561
                 4442788999*************************999999866533556777775555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.32s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 5265.00
//
Query:       CCD24684.1  [L=511]
Description: hypothetical protein NDAI_0D03700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0026   18.1  22.0      0.004   17.5  22.0    1.2  1  MMR1          Mitochondrial Myo2 receptor-related protein
  ------ inclusion threshold ------
      0.074   13.0  22.5        0.1   12.6  22.5    1.2  1  TFIIA         Transcription factor IIA, alpha/beta subunit
       0.35   10.8  10.3       0.54   10.2  10.3    1.2  1  Suf           Suppressor of forked protein (Suf)
        1.1    8.3  26.6        1.8    7.6  26.6    1.3  1  SOG2          RAM signalling pathway protein
        1.2    7.6  25.1        1.7    7.1  25.1    1.1  1  SWI-SNF_Ssr4  Fungal domain of unknown function (DUF1750)
        1.6    7.2  17.4        2.2    6.8  17.4    1.1  1  Macoilin      Macoilin family
        2.7    6.7  11.7        4.5    5.9  11.7    1.5  1  Presenilin    Presenilin
        5.6    5.5  21.8          7    5.2  21.8    1.1  1  Hamartin      Hamartin protein


Domain annotation for each model (and alignments):
>> MMR1  Mitochondrial Myo2 receptor-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5  22.0   1.8e-06     0.004      37     236 ..      90     298 ..      85     324 .. 0.56

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.8e-06
        MMR1  37 MLKpEYl.sqkqnsn......lPllSallknsskntenskkaseqeatgskqnnek..elnvekski.skltiketleqlreeksqqksksaekekqkr 125
                  LK+ Y+  ++q+++       Pl  a + ++s+n + ++++ + +a+ + +n ++  +++v+ ++i  ++ti  +le  ++  ++ +  s+++++q++
  CCD24684.1  90 ILKK-YItLASQTNTlptmttTPLKAAATPSASSNHQHNSNNAQVSAQVTISNVNEvtTADVQSTEIkNQITITSQLENNQQ--NNLQPTSTTQSQQPQ 185
                 5555.88755689996666667777788887777776666655555555555555555888899999999999999999944..333333333333334 PP

        MMR1 126 svaakseqesekveelek...sksereisetssaiSestlleledle.tteaetlnpnnsveekkpavektk..spskrivStssvassleevelnelp 218
                 ++++++ +++  ++++e+   ++      + ++   + t + + d++ t +++++ +++s    +p   ++   +      S  +v+s l+ +++++++
  CCD24684.1 186 TTTTQQTTSTTSTNAEEQvqqPTTTTSTTQENQQPVTTTTT-QGDIQtTANSASNGNSGSALTSVPRALAYSpyNADGTCKSGDAVYSDLQAMKEKGVS 283
                 44444444333333333311122222222222222333333.233554555555555555555544433332102445567777888888888888887 PP

        MMR1 219 kdleldalptDknGFvql 236
                 k      + tD n F  +
  CCD24684.1 284 KI---RVYGTDCNSFETI 298
                 63...3677777777654 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  22.5   4.6e-05       0.1      99     262 ..     102     231 ..      27     296 .. 0.39

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.6e-05
       TFIIA  99 ksvqslt.a.nssaataatfslpakleppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqq.sqgsaaqssvaalqaqsqqaqalaepqqq 194
                 ++++ +t +  ++aat ++ s +  ++ + q+ a+vt ++++                       v+   +q+  ++++++  ++ ++++q   +p ++
  CCD24684.1 102 NTLPTMTtTpLKAAATPSASSNHQHNSNNAQVSAQVTISNVNE----------------------VTTAdVQSTEIKNQITITSQLENNQQNNLQPTST 178
                 1111111112111122222222222222222222222222221......................1111222222222222221111111111111111 PP

       TFIIA 195 .lekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqasqeqvagsqvessqtdgaedaleeespvlegels 262
                  ++     qq q++++qq+++++ + + ++q qq+         ++ s+t+++++  ++ +   +g+++
  CCD24684.1 179 tQS-----QQPQTTTTQQTTSTT-STNAEEQVQQP--------TTTTSTTQENQQPVTTTT--TQGDIQ 231
                 111.....111111111111111.11011111111........111111111111111100..111111 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  10.3   0.00024      0.54     106     249 ..      87     232 ..      54     256 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00024
         Suf 106 akelykkfleyestfgdlssilklekRmeelfpe......dskleqfvdRYklknldpikkrelksetkqeeekallqkkeeqaasleeskvpqaqesk 198
                 + ++ kk++  +s+ + l   +    + +++ +       +s+ +q+++   + n++++++ +++s + + +   + q +++q+++l++++++q+q+ +
  CCD24684.1  87 ITKILKKYITLASQTNTLPTMTTTPLKAAATPSAssnhqhNSNNAQVSAQVTISNVNEVTTADVQSTEIKNQITITSQLENNQQNNLQPTSTTQSQQPQ 185
                 556666666666666666666665555555444355555577778888888888888888888888877777777766666677776666444444444 PP

         Suf 199 krklesedssvkkPdklqmvespkkgaagrrleqqrksessksaeaasksq 249
                 ++ +++ +s+ +  ++ + v++p+ ++     +q+++++++ ++++   ++
  CCD24684.1 186 TTTTQQTTST-TSTNAEEQVQQPTTTT---STTQENQQPVTTTTTQGDIQT 232
                 4444444433.2222222222222222...222222222222222222222 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  26.6   0.00082       1.8     164     342 ..      79     261 ..      39     306 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00082
        SOG2 164 ptaskkkragrtksksisttssgssstlvssaesstesrassvtytartRhagsfsaqdveqGaaltplrsdqipfnl...............srsrrs 247
                 pta +++++++ ++k i  +s++++     ++  +t+ +a +++      ++   ++++ + +a++t +++++++ +                 +++++
  CCD24684.1  79 PTAEPTTTITKILKKYITLASQTNTL----PTMTTTPLKAAATPSA---SSNHQHNSNNAQVSAQVTISNVNEVTTADvqsteiknqititsqLENNQQ 170
                 55556666666666655555544443....3333333333333322...22222222333334444433333222222232333333344433223333 PP

        SOG2 248 sssgnsaspaangaqsetsersasssg.vqssasstPlgegstsppgalsrqslsttgststltsssksrsssrsntnasastprslattpappas 342
                 ++ +++++ +++++q++t+++++s++  +  ++ ++P +++st++    ++q ++tt+ + + ++ ++s s+ +s  +a +s pr la +p  +a 
  CCD24684.1 171 NNLQPTSTTQSQQPQTTTTQQTTSTTStNAEEQVQQPTTTTSTTQ---ENQQPVTTTTTQGDIQTTANSASNGNSG-SALTSVPRALAYSPY-NAD 261
                 333444444444444444444444433344555555555555554...2222233333333444444444433333.556788888887776.333 PP

>> SWI-SNF_Ssr4  Fungal domain of unknown function (DUF1750)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  25.1   0.00078       1.7     524     685 ..      92     244 ..      62     269 .. 0.58

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.00078
  SWI-SNF_Ssr4 524 nnfptpqeqlsaaqsaaatpasanvaspapaqataqeaqsaesededvemggteekeketetapdaatesgdwVvvpkggkspseaaakaaaeasae 620
                   +++ t ++q+++ ++ ++tp +a +a+p++++++ q+++++++ + +v++++++e     +ta+ ++te ++ + + ++ ++ ++++ + + +++++
    CCD24684.1  92 KKYITLASQTNTLPTMTTTPLKA-AATPSASSNH-QHNSNNAQVSAQVTISNVNE----VTTADVQSTEIKNQITITSQLENNQQNNLQPTSTTQSQ 182
                   36667777777777777777333.3334433333.35677788889999999988....66788999999999999876555555554444444444 PP

  SWI-SNF_Ssr4 621 agaaaaekaa.kesa.akateaagkeattpaakaasaaatpealetanseldandfsslgDldsaGd 685
                   ++++++++++ ++++ ++++++++ ++tt++++++++  t+++ ++++ +++an+ s+     ++G 
    CCD24684.1 183 QPQTTTTQQTtSTTStNAEEQVQQPTTTTSTTQENQQPVTTTT-TQGDIQTTANSASNG----NSGS 244
                   4444444444123332444444444444444444443333333.445555455544443....4444 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  17.4   0.00097       2.2     224     355 ..     110     244 ..      76     292 .. 0.45

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00097
    Macoilin 224 kelv.evdpvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymen..kskskrlsksessgsesellveesvksk 319
                 + l   + p+a s+++h+ n+ + s +++  + +e +++  +s ++ k++ + ++++++++q++   ++  +s++ + +++++++s++++++ee+v++ 
  CCD24684.1 110 TPLKaAATPSASSNHQHNSNNAQVSAQVTISNVNEVTTADVQS-TEIKNQITITSQLENNQQNNLQPTSttQSQQPQTTTTQQTTSTTSTNAEEQVQQP 207
                 2222122344444444444444333333333333322222222.2222222222333333333222222002223333334445555555555555555 PP

    Macoilin 320 ssssssssnknskkasagsagssns.sskkhsessks 355
                 ++++s+++++++  +++++ g  ++ +    + +s+s
  CCD24684.1 208 TTTTSTTQENQQPVTTTTTQGDIQTtANSASNGNSGS 244
                 5444443322222222222222222022222222333 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  11.7     0.002       4.5     231     291 ..     144     213 ..      92     308 .. 0.54

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.002
  Presenilin 231 evaeseeeeeaekkkeeasesskeeeseeesseksaqsse.........seeeseeesseaessaeesse 291
                 ev++++ ++++ k++ +++++ +++++++ ++++++qs++         ++++s+++++++++ ++++s+
  CCD24684.1 144 EVTTADVQSTEIKNQITITSQLENNQQNNLQPTSTTQSQQpqttttqqtTSTTSTNAEEQVQQPTTTTST 213
                 2223333333222222333333222222222222222221111110000111111111111111111111 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  21.8    0.0031         7     312     458 ..      83     233 ..      26     299 .. 0.54

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0031
    Hamartin 312 avlsvessrskddeislWSPs.svcgmttppsspgivpttelelsssasllsskvsstpeaagkatpe...tTPakssrklppslsesavvvalpassr 406
                 ++++ + + +k +  +l S + ++ +mtt+p + + +p+ +++ ++++ + + +++ t +++++ t++   +T +k   ++ ++l +++    +p+s+ 
  CCD24684.1  83 PTTTITKILKKYI--TLASQTnTLPTMTTTPLKAAATPSASSNHQHNSNNAQVSAQVTISNVNEVTTAdvqSTEIKNQITITSQLENNQQNNLQPTSTT 179
                 2233333333333..334444466677777777777776555555555555555555555555555554444444444444444444444433333333 PP

    Hamartin 407 ksspprkdeks.esskpdlskqeevenekeleeslk.skssvtlseLsdvikel 458
                 +s++p++  ++ + s ++++ +e+v++ ++ +++++ +++ vt++  +  i+++
  CCD24684.1 180 QSQQPQTTTTQqTTSTTSTNAEEQVQQPTTTTSTTQeNQQPVTTTTTQGDIQTT 233
                 333333333332333333333333322222222222233444443333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3017  (0.168275); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                       146  (0.00814323); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.89u 0.35s 00:00:01.24 Elapsed: 00:00:00.47
# Mc/sec: 3252.72
//
Query:       CCD24685.1  [L=105]
Description: hypothetical protein NDAI_0D03710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-23   81.1   0.1    4.1e-23   80.9   0.1    1.0  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.1   2.3e-27   4.1e-23       2      94 ..       9     101 ..       8     102 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 2.3e-27
                     HHHHHHHHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHH..HTTEEEEEESCHHHHHHHTTSSSECSEEEEEESTTTHHH CS
  Ribosomal_L7Ae   2 aieevlkkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealck..ekevpyvkvkskkeLGelvgkkrpvsalaikdegdskdl 94 
                     +i+++l ++ k+gk++lG+k ++k+l++g+ kl+i+A++++  +k++ le++++  +++v+y+++ + +eLG++vgk ++v +++i ++gds++l
      CCD24685.1   9 SINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSE-LEYYAMlsKTKVYYFQGGN-NELGTAVGKLFRVGVVSILEAGDSDIL 101
                     689********************************************.*******************.************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      216  (0.0120475); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 804.09
//
Query:       CCD24686.1  [L=156]
Description: hypothetical protein NDAI_0D03720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-30  103.1   0.2    6.7e-30  103.1   0.2    2.0  2  Ribosomal_L24e  Ribosomal protein L24e


Domain annotation for each model (and alignments):
>> Ribosomal_L24e  Ribosomal protein L24e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.2   3.8e-34   6.7e-30       1      66 []       1      66 [.       1      66 [. 0.99
   2 ?   -3.0   2.5       0.5   8.9e+03      39      57 ..     106     124 ..      93     133 .. 0.55

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 3.8e-34
                    XXX-B-TTT-SB--SS--EEEE-TTS-EEEESSHHHHHHHHTT--GGGSTTSTTT-XXXXXXXX.. CS
  Ribosomal_L24e  1 mktekCsFsgykiyPGhGkrfvrnDgkvfrFlssKceklfkqkrnPrklkWTkayRrahkkeltee 66
                    mk+e+ sFsg+kiyPG+G++fvr D+k+frF +sK+++lfkq++nPr+++WT++yRr hkk++tee
      CCD24686.1  1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRVAWTVLYRRHHKKGITEE 66
                    9*************************************************************9986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.5
                     HHHTT--GGGSTTSTTT-X CS
  Ribosomal_L24e  39 lfkqkrnPrklkWTkayRr 57 
                       k+kr  rk k T ++ r
      CCD24686.1 106 EEKKKRLIRKEKRTDKAAR 124
                     4445555555555544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1427  (0.0795917); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1148.57
//
Query:       CCD24687.1  [L=86]
Description: hypothetical protein NDAI_0D03730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-26   91.3   9.7    2.7e-26   91.0   9.7    1.1  1  AGA2      A-agglutinin-binding subunit Aga2


Domain annotation for each model (and alignments):
>> AGA2  A-agglutinin-binding subunit Aga2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   9.7   1.5e-30   2.7e-26       1      58 []      27      86 .]      27      86 .] 0.99

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 1.5e-30
        AGA2  1 tiPt.atlEtTPYStsTttilangksmvgVteyYrSvtYvsnCd.ttttkaeptstitvf 58
                t+Pt at+EtTPYS+sTt+i++ng++ +gV+eyY+SvtYvsnCd +t++k++ ++t+t+f
  CCD24687.1 27 TVPTgATVETTPYSSSTTNIVQNGVTKIGVFEYYKSVTYVSNCDpNTSSKGALIVTQTIF 86
                79*********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      207  (0.0115455); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 651.16
//
Query:       CCD24688.1  [L=147]
Description: hypothetical protein NDAI_0D03740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.012   14.9   1.7      0.015   14.6   1.7    1.1  1  TMPIT         TMPIT-like protein
      0.054   13.5   2.3      0.074   13.1   2.3    1.1  1  DUF2887       Protein of unknown function (DUF2887)
      0.055   13.9   0.2      0.071   13.5   0.2    1.2  1  Terminase_3C  Terminase RNAseH like domain
      0.085   12.8   2.3        3.1    7.8   0.3    2.4  2  DUF5345       Family of unknown function (DUF5345)
        0.4   10.7   2.4        1.3    9.1   2.5    1.8  2  Noelin-1      Neurogenesis glycoprotein
        1.2    7.7   4.6        1.4    7.4   4.6    1.1  1  FapA          Flagellar Assembly Protein A


Domain annotation for each model (and alignments):
>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   1.7   4.9e-06     0.015       4      82 ..      17      97 ..      14     111 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.9e-06
       TMPIT  4 weelekefkeleetakeykqkleelsklqs..kcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvl 82
                +++l++++ ele + + ++ +l++++k  s  ++   i++ k+++k l+++l++l+++ + e+e+++eel e+ + ++k l
  CCD24688.1 17 ISDLRSQLMELERKRNLLQDNLNNIHKYPSnaRLLDIIQERKEEMKTLTKRLHHLEEEENPENEKIIEELIESRRLAEKEL 97
                578999999****************997651156789********************************988765555544 PP

>> DUF2887  Protein of unknown function (DUF2887)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   2.3   2.5e-05     0.074     114     182 ..      23      89 ..      11      96 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.5e-05
     DUF2887 114 elleservkriYLdeLeeeeelslglalvkLvveeeeeaiekarqLlerakqeledeeeqrklleliet 182
                 +l+e er ++++ d+L++ ++ + +++l+ ++ e++ee+++ +++L +  ++e  ++  ++ + elie+
  CCD24688.1  23 QLMELERKRNLLQDNLNNIHKYPSNARLLDIIQERKEEMKTLTKRLHHLEEEENPEN--EKIIEELIES 89 
                 677788889999**********************************98877766544..4667788885 PP

>> Terminase_3C  Terminase RNAseH like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   2.4e-05     0.071      62     130 ..      14      96 ..       4     107 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.4e-05
  Terminase_3C  62 vkgiaalksq................thrktvrakkaqgsvlqkdrflktfravlkgeyLdpeaipkleqlisElnkyqykrdkg 130
                   ++ i  l+sq                ++ k+  + +  + +   ++ +kt+ + l    L+ e++p++e++i+El++  +  +k+
    CCD24688.1  14 FEIISDLRSQlmelerkrnllqdnlnNIHKYPSNARLLDIIQERKEEMKTLTKRL--HHLEEEENPENEKIIEELIESRRLAEKE 96 
                   55556666666666666666666666667777777888888889999****9999..59******************99877766 PP

>> DUF5345  Family of unknown function (DUF5345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0053        16       9      35 ..      36      63 ..      27      67 .. 0.87
   2 ?    7.8   0.3     0.001       3.1       5      55 ..      65     111 ..      61     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0053
     DUF5345  9 Dqlievet.Psleeleqllaeekerkrk 35
                D l++ +  Ps + l ++++e+ke+ + 
  CCD24688.1 36 DNLNNIHKyPSNARLLDIIQERKEEMKT 63
                677788888***************9985 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.001
     DUF5345   5 lerlDqlievetPsleeleqllaeekerkrkrlrrElllFlliAllilsll 55 
                  +rl +l e+e+P+ e++ + l     ++r+   +El++ + ++l +l+++
  CCD24688.1  65 TKRLHHLEEEENPENEKIIEEL----IESRRLAEKELAIRTRMSLALLGVI 111
                 5677787788889999999988....899***********99999999986 PP

>> Noelin-1  Neurogenesis glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.25   7.3e+02      74      94 ..      15      35 ..       9      44 .. 0.64
   2 ?    9.1   2.5   0.00043       1.3      41      97 ..      24      82 ..      17      85 .. 0.73

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.25
    Noelin-1 74 tllktlesklkvveedrkels 94
                +++++l+s+l ++e +r+ l+
  CCD24688.1 15 EIISDLRSQLMELERKRNLLQ 35
                456667777776666555444 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00043
    Noelin-1 41 lrqllekvqnlsqsievldlR..tsrdlqyvrktetllktlesklkvveedrkelsaks 97
                l +l+ k + l ++++ +++    +r l+ +++ ++ +ktl+++l+++ee+++  ++k 
  CCD24688.1 24 LMELERKRNLLQDNLNNIHKYpsNARLLDIIQERKEEMKTLTKRLHHLEEEENPENEKI 82
                5556555555566666666641145779*********************9998777765 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.6   0.00048       1.4     340     411 ..      18      85 ..       7     123 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00048
        FapA 340 keleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeelesk 411
                 ++l+ +l ele++ + l+++++ + k    +  +++ ++ +++ +e+++ l+++l++leee +  +e++ + 
  CCD24688.1  18 SDLRSQLMELERKRNLLQDNLNNIHK----YPSNARLLDIIQERKEEMKTLTKRLHHLEEEENPENEKIIEE 85 
                 55555555555555555555555555....333444445555555555555555555555555333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1704  (0.0950416); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1085.54
//
Query:       CCD24689.1  [L=493]
Description: hypothetical protein NDAI_0D03750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-07   29.4  11.1     0.0051   17.2   0.8    3.4  3  zf-H2C2_2   Zinc-finger double domain
    1.2e-05   25.5  12.5      0.031   14.7   0.5    2.5  2  zf-C2H2     Zinc finger, C2H2 type
     0.0091   16.8  10.7       0.81   10.7   4.7    2.5  2  zf-C2H2_4   C2H2-type zinc finger
  ------ inclusion threshold ------
      0.056   13.4   1.3       0.15   12.1   1.3    1.8  1  ADK_lid     Adenylate kinase, active site lid
        0.6   10.2   4.5         14    5.9   1.8    2.5  2  zf-C2H2_6   C2H2-type zinc finger
       0.64   10.7   0.1       0.64   10.7   0.1    2.8  3  FOXP-CC     FOXP coiled-coil domain


Domain annotation for each model (and alignments):
>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1    0.0011       3.3      12      24 ..      40      52 ..      34      54 .. 0.89
   2 !   17.2   0.8   1.7e-06    0.0051       3      25 ..      59      83 ..      59      84 .. 0.87
   3 !    9.5   0.6   0.00045       1.3       2      14 ..      88     100 ..      87     101 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0011
   zf-H2C2_2 12 ekpyeCplCdkaF 24
                ++p+ Cp+C  aF
  CCD24689.1 40 PRPHVCPVCQRAF 52
                689*******999 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 1.7e-06
   zf-H2C2_2  3 rrHirkHtgekpyeCp..lCdkaFk 25
                +rH+r+Htgekp  C+   C k+F+
  CCD24689.1 59 TRHLRTHTGEKPNVCDfpGCIKRFS 83
                59**************655999997 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00045
   zf-H2C2_2   2 LrrHirkHtgekp 14 
                 L+rH r Ht+++p
  CCD24689.1  88 LTRHKRIHTNPNP 100
                 99*********98 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   5.8   1.2e-05     0.037       1      23 []      43      65 ..      43      65 .. 0.98
   2 !   14.7   0.5     1e-05     0.031       3      23 .]      73      95 ..      71      95 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.2e-05
                EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirtH 23
                ++Cp+C + F r ++ +rH+rtH
  CCD24689.1 43 HVCPVCQRAFHRLEHQTRHLRTH 65
                79********************9 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1e-05
                ET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2  3 Cp..dCgksFkrksnLkrHirtH 23
                C+  +C k+F+r+++L+rH r+H
  CCD24689.1 73 CDfpGCIKRFSRSDELTRHKRIH 95
                6666888**************99 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   4.7   0.00027      0.81       1      23 [.      43      65 ..      43      66 .. 0.94
   2 !    9.2   0.3   0.00081       2.4       3      23 ..      73      95 ..      72      96 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00027
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlkth 23
                + Cp+C++ F++ ++  rHl+th
  CCD24689.1 43 HVCPVCQRAFHRLEHQTRHLRTH 65
                58*************999****9 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00081
   zf-C2H2_4  3 Cpi..CgksFsskkaLlrHlkth 23
                C++  C k+Fs++++L rH + h
  CCD24689.1 73 CDFpgCIKRFSRSDELTRHKRIH 95
                66666**************9998 PP

>> ADK_lid  Adenylate kinase, active site lid
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   1.3   5.1e-05      0.15       3      34 ..      44      84 ..      43      86 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.1e-05
                E-TTT--EEETTTB--S........STTB-TTT--..-B-- CS
     ADK_lid  3 vCpkCGrsYhvvfnpPk........veglCDkCGe.pLvqR 34
                vCp C+r +h+  +  +        ++++CD +G  + + R
  CCD24689.1 44 VCPVCQRAFHRLEHQTRhlrthtgeKPNVCDFPGCiKRFSR 84
                9********9553444445555556******9997555555 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.8    0.0046        14       2      24 ..      43      65 ..      43      68 .. 0.82
   2 ?    4.3   0.1     0.014        41       7      24 ..      78      95 ..      77      96 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0046
   zf-C2H2_6  2 heCsvCsksFpslqaLggHkksH 24
                h+C+vC + F+ l   + H+++H
  CCD24689.1 43 HVCPVCQRAFHRLEHQTRHLRTH 65
                99*********987766666666 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.014
   zf-C2H2_6  7 CsksFpslqaLggHkksH 24
                C k+F+  ++L+ Hk+ H
  CCD24689.1 78 CIKRFSRSDELTRHKRIH 95
                88*************966 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.51   1.5e+03      10      28 ..      46      64 ..      44      70 .. 0.86
   2 ?   10.7   0.1   0.00021      0.64       5      35 ..      71     101 ..      69     118 .. 0.76
   3 ?   -2.2   1.0       2.2   6.7e+03      43      54 ..     400     411 ..     382     416 .. 0.57

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.51
     FOXP-CC 10 PgCekvledveeflkhlns 28
                P C+++++ +e+ ++hl++
  CCD24689.1 46 PVCQRAFHRLEHQTRHLRT 64
                8899999999999999986 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00021
     FOXP-CC   5 gvCkWPgCekvledveeflkhlnseHalddk 35 
                 +vC+ PgC k ++ ++e+++h + + +++ k
  CCD24689.1  71 NVCDFPGCIKRFSRSDELTRHKRIHTNPNPK 101
                 79******************97665555554 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.2
     FOXP-CC  43 qmqvvqqlekql 54 
                 q+q +qq ++q+
  CCD24689.1 400 QQQQLQQQNQQF 411
                 334444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1416  (0.0789782); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3655.89
//
Query:       CCD24690.1  [L=177]
Description: hypothetical protein NDAI_0D03760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-08   34.2  13.7    2.9e-06   28.6   2.6    2.9  2  Ecl1      ECL1/2/3 zinc binding proteins
  ------ inclusion threshold ------
      0.043   13.9   0.8      0.059   13.5   0.8    1.3  1  DUF3612   Protein of unknown function (DUF3612)
      0.056   13.4   1.7       0.13   12.2   1.7    1.6  1  zf-FCS    MYM-type Zinc finger with FCS sequence motif
        0.3   11.1   2.3       0.68   10.0   0.3    2.1  2  DUF2116   Uncharacterized protein containing a Zn-ribbon (DUF


Domain annotation for each model (and alignments):
>> Ecl1  ECL1/2/3 zinc binding proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   4.2   0.00058       2.6       1      20 [.       1      21 [.       1      50 [. 0.87
   2 !   28.6   2.6   6.4e-10   2.9e-06      19      83 ..      54     123 ..      49     168 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00058
        Ecl1  1 aasflqfCamCEkqi.vpsns 20
                +  f+++C++CEk i +  +s
  CCD24690.1  1 MSPFNDYCIVCEKLIvSTPSS 21
                677************755555 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 6.4e-10
        Ecl1  19 nsiLYCSEaCRrkDsekslssssssss.....spplsprsssapseprdsavpsrp..sfsripsdssdsks 83 
                 ++ LYCSE+CR+kD++ + + + s +s     +   s+++ +++ +p+  ++  +   + ++ +++++d+++
  CCD24690.1  54 SERLYCSESCRLKDANAQQQQQRSVLSlppinNDEISTFALNSANKPN--IIINTTenKNTQSNNNIHDNTN 123
                 568***********5555555555554111115555555555555553..2222222222333333333333 PP

>> DUF3612  Protein of unknown function (DUF3612)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.8   1.3e-05     0.059      53     102 ..      36      84 ..      31     132 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.3e-05
     DUF3612  53 sepskgssaqisilnvgdepriyccesikvkdlagnnhvlcagidlnpai 102
                 ++++++s + is+    ++ r+yc es ++kd+  +++   + + l p i
  CCD24690.1  36 NNNASSSNSSISLSTLVESERLYCSESCRLKDANAQQQQQRSVLSLPP-I 84 
                 55677788899999999***************9988877666666644.4 PP

>> zf-FCS  MYM-type Zinc finger with FCS sequence motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.7   2.9e-05      0.13       5      39 ..       7      65 ..       5      66 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.9e-05
      zf-FCS  5 rCwfCkkyikgkpef.tyvlend.......................gvvgqFCStsCld 39
                 C  C k+i   p + +++l+nd                        ++  +CS+sC+ 
  CCD24690.1  7 YCIVCEKLIVSTPSSfVNQLSNDhgnsnsnnnasssnssislstlvESERLYCSESCRL 65
                7********8888559*****************************************97 PP

>> DUF2116  Uncharacterized protein containing a Zn-ribbon (DUF2116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.14   6.3e+02       6      13 ..       8      15 ..       6      21 .. 0.80
   2 ?   10.0   0.3   0.00015      0.68      13      38 ..      52      77 ..      47      81 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.14
     DUF2116  6 CivCGkaI 13
                CivC k I
  CCD24690.1  8 CIVCEKLI 15
                ****9877 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00015
     DUF2116 13 IpldesfCsekCqeeyekkrkkvars 38
                ++++   Cse C+ +  +++++++rs
  CCD24690.1 52 VESERLYCSESCRLKDANAQQQQQRS 77
                6889999******9999888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1175  (0.0655363); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1366.91
//
Query:       CCD24691.1  [L=651]
Description: hypothetical protein NDAI_0D03770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2282  (0.12728); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4398.11
//
Query:       CCD24692.1  [L=707]
Description: hypothetical protein NDAI_0D03780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-11   42.7   3.3      8e-11   41.6   3.3    1.7  1  NUC153          NUC153 domain
    0.00044   21.0   0.5        5.5    8.0   0.0    4.0  4  WD40            WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.16   12.3   0.0        2.1    8.7   0.0    2.6  4  ANAPC4_WD40     Anaphase-promoting complex subunit 4 WD40 dom


Domain annotation for each model (and alignments):
>> NUC153  NUC153 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   3.3   1.3e-14     8e-11       1      29 []     479     507 ..     479     507 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.6 bits;  conditional E-value: 1.3e-14
      NUC153   1 DpRFkalFedhdFaIDptspeFkktnpmk 29 
                 D+RFk++Fed+dF++D++   +k++np+k
  CCD24692.1 479 DDRFKEMFEDEDFQVDEDAYDYKQLNPVK 507
                 9**************************86 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.002        12      15      38 .]      61      85 ..      52      85 .. 0.88
   2 !    8.0   0.0   0.00092       5.5      11      38 .]     181     208 ..     170     208 .. 0.83
   3 ?   -1.0   0.0      0.64   3.8e+03      13      38 .]     231     256 ..     223     256 .. 0.77
   4 ?    0.3   0.3      0.25   1.5e+03      25      38 .]     289     301 ..     274     301 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.002
                EEEEETTSSE.EEEEETTSEEEEEE CS
        WD40 15 slafspdgaw.lasGsdDgtvriWd 38
                 +++spdg++ +a+G++++ ++++d
  CCD24692.1 61 KIKVSPDGQYaMATGTYKPQIHVYD 85
                5789******5579999******98 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00092
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                  +v++++ s+ + +++ G++D+ v +Wd
  CCD24692.1 181 EGVNHVSISDANGLISVGMEDNVVEFWD 208
                 45999999999999999**********9 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.64
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 vt  +f +dg  +a+G+ +g  +++d
  CCD24692.1 231 VTTTSFRKDGLNFACGTSNGYTYLYD 256
                 88888999999999996598877776 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.25
                 EEEEETTSEEEEEE CS
        WD40  25 lasGsdDgtvriWd 38 
                 +++++ ++  +iWd
  CCD24692.1 289 ILTSD-KRIAKIWD 301
                 45655.*******9 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.5   1.5e+04      44      69 ..      62      88 ..      55     102 .. 0.72
   2 ?   -0.3   0.0      0.23   1.4e+03      42      81 ..     142     181 ..     141     191 .. 0.84
   3 ?    0.1   0.0      0.16   9.8e+02      33      68 ..     175     210 ..     158     223 .. 0.73
   4 ?    8.7   0.0   0.00034       2.1       9      89 ..     194     279 ..     186     282 .. 0.69

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 2.5
  ANAPC4_WD40 44 LaWkpdgk.lLavaysdgevrlldaes 69
                 ++ +pdg+  +a ++ + +++++d  +
   CCD24692.1 62 IKVSPDGQyAMATGTYKPQIHVYDFAN 88
                 666777773478888888888888766 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.23
  ANAPC4_WD40  42 rsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  rsLa+++ +  L v+ s +e+  l+ e+g+ ++ +++++e
   CCD24692.1 142 RSLAYNKVNCDLFVGASGNELYRLNLEQGRFLNPFKTDTE 181
                  5788888888899******************999998876 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.16
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  + +++ + v++++ +  + l+ v+++d+ v++ d  
   CCD24692.1 175 PFKTDTEGVNHVSISDANGLISVGMEDNVVEFWDPR 210
                  445667789999999999999******999988755 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.00034
  ANAPC4_WD40   9 LiAlatedgellvfRl.ngqrvwtl....eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  Li++++ed+ ++        rv +l    e ++++ +v+  ++++dg  +a ++s+g   l+d  +       + +   +++++ W
   CCD24692.1 194 LISVGMEDNVVEFWDPrARSRVAKLflenELENSSFQVTTTSFRKDGLNFACGTSNGYTYLYDLRTSAPTTVKDQGYGFEIKKIIW 279
                  6666666666655321123344444444566788899**************************99887666666665556666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2101  (0.117184); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                       136  (0.00758548); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.15u 0.34s 00:00:01.49 Elapsed: 00:00:00.54
# Mc/sec: 3911.62
//
Query:       CCD24693.1  [L=966]
Description: hypothetical protein NDAI_0D03790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        2.1    7.2   4.7        9.7    5.1   0.1    2.3  2  Chloroplast_duf  Petal formation-expressed


Domain annotation for each model (and alignments):
>> Chloroplast_duf  Petal formation-expressed
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1   0.00054       9.7      13      37 ..     130     154 ..     120     159 .. 0.88
   2 ?    3.0   1.3    0.0023        42      10      53 ..     858     901 ..     852     915 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.00054
  Chloroplast_duf  13 vemhknigeqRdnWnklllnsinsi 37 
                      + +h+ i +  dnW +lllns  +i
       CCD24693.1 130 KSLHEFIIDSWDNWYHLLLNSQSTI 154
                      578******************9887 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0023
  Chloroplast_duf  10 adRvemhknigeqRdnWnklllnsinsitltaavmaglaaasss 53 
                      ++R++mh+ + +  +  ++++ nsi  +  t + ma+ +++++s
       CCD24693.1 858 SQRMDMHNAVPHRNNLSDEIMNNSISNMPKTPTSMASNNTSTTS 901
                      78********998888899****************998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1084  (0.0604607); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.27s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 6727.19
//
Query:       CCD24694.1  [L=213]
Description: hypothetical protein NDAI_0D03800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-27   95.3   0.0    6.8e-27   94.7   0.0    1.2  1  Isochorismatase  Isochorismatase family
  ------ inclusion threshold ------
       0.12   12.0   0.1       0.19   11.4   0.1    1.4  1  MRP-S34          Mitochondrial 28S ribosomal protein S34


Domain annotation for each model (and alignments):
>> Isochorismatase  Isochorismatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.0   7.6e-31   6.8e-27       2     158 ..       3     199 ..       2     209 .. 0.91

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 7.6e-31
  Isochorismatase   2 alvviDmqndfv.eegvkeseeisavveninkllkaarkagipviftrdvhe.......................leevkgdlderkaaphfkp 71 
                      al++iD+qndf+ ++g+ +++  +++v  i +l++  ++ + +v++trd h+                        + +k  ++   ++ h+++
       CCD24694.1   3 ALLIIDVQNDFLpPNGTLAVPHGDEIVHPILELIHDEKQDWHRVVMTRDWHPknhisfakrhnqepyskitykspKPGDKTTQEGVLWPVHCIQ 96 
                      9***********************************************************************99999999999*********** PP

  Isochorismatase  72 gttgaelvpelaple...gdvvvdKt......rfsaf......agtdldeiLkelgiktivlaGiatdvCVeatardaldlGyevvvvsDAvaa 150
                      +t+g++l + l         ++vdK        +saf       +t+l+e+L+++ i++++++G+a d+CV+ ta++a++lGy++++++D +  
       CCD24694.1  97 NTRGSQLADPLLKETyknHYKIVDKGflsdreYYSAFhdiwnfHKTELHEYLQKHHITEVYIVGLALDYCVKETAISAAKLGYKTTILKDYTKP 190
                      ********99987776755567776655555599999*****************************************************9999 PP

  Isochorismatase 151 lspel.hda 158
                      ++ ++  ++
       CCD24694.1 191 VNSDDeSMM 199
                      998874444 PP

>> MRP-S34  Mitochondrial 28S ribosomal protein S34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   2.1e-05      0.19      24      84 ..      59     121 ..      55     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.1e-05
     MRP-S34  24 swlqrydePcYlritkvepdmsaenlrkgkaw...gektfrGknegkvkeisktnkadwrLvpk 84 
                 s+++r+++  Y +it   p++ +++ ++g  w    ++  rG +   +   ++t+k+ +++v k
  CCD24694.1  59 SFAKRHNQEPYSKITYKSPKPGDKTTQEGVLWpvhCIQNTRGSQLADPLL-KETYKNHYKIVDK 121
                 6789999999********************99444567889*99999998.***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1601.74
//
Query:       CCD24695.1  [L=399]
Description: hypothetical protein NDAI_0D03810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-15   56.9   0.2    7.5e-15   55.4   0.0    1.9  2  Gly_transf_sug  Glycosyltransferase sugar-binding region cont
  ------ inclusion threshold ------
      0.011   15.1   0.6      0.023   14.1   0.6    1.4  1  SCF             Stem cell factor


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   8.3e-19   7.5e-15      18      92 ..      55     123 ..      28     129 .. 0.74
   2 ?   -2.3   0.0      0.78     7e+03      23      41 ..     317     335 ..     283     354 .. 0.56

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 8.3e-19
  Gly_transf_sug  18 yqvvvlskelekvrvaildlefllsd.tp...wfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlkslrnsig 92 
                     +q+ +++++         ++e+ll++ +     + +a++l+p++i ++D++R++iLy+ GGiY+D+D+i+lk+l ++++
      CCD24695.1  55 FQYSLITDD---------NIESLLNNvYGeapLVIDAFQLMPNNILKADFFRYLILYARGGIYSDMDTIPLKEL-KDWP 123
                     555555555.........556666553334558999**************************************.7776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.78
  Gly_transf_sug  23 lskelekvrvaildlefll 41 
                     +++++++++ +i +   l+
      CCD24695.1 317 MKNQQKNNHTKIENSLNLK 335
                     2222334444444444444 PP

>> SCF  Stem cell factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.6   2.5e-06     0.023      81     147 ..     285     348 ..     276     357 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.5e-06
         SCF  81 ltnlldkfseiseslsnysiidklvkiiddlvecleedknknfvkknlklyeeksfipeeffrlfnr 147
                 ++nl++  s+i    sny +i +l+     l+  + ++++kn   k  ++++ k++ip eff l  +
  CCD24695.1 285 MNNLVKTNSDIILINSNYVVIPNLRP---QLMRRIMKNQQKNNHTKIENSLNLKRLIPWEFFTLITE 348
                 78999999***************985...7999999999999999999**************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2844.13
//
Query:       CCD24696.1  [L=268]
Description: hypothetical protein NDAI_0D03820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-50  171.3   0.1    1.6e-50  170.9   0.1    1.2  1  Ras          Ras family
    2.9e-17   63.0   0.0    5.7e-17   62.0   0.0    1.5  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    2.6e-08   33.5   0.1    3.5e-08   33.1   0.1    1.2  1  Arf          ADP-ribosylation factor family
    7.1e-06   25.7   0.1    1.5e-05   24.7   0.1    1.6  1  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0012   18.8   0.0        1.7    8.5   0.0    2.4  2  RsgA_GTPase  RsgA GTPase
     0.0035   17.4   0.0     0.0067   16.5   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.041   14.2   2.4      0.063   13.6   0.8    1.9  2  RESP18       RESP18 domain
       0.19   12.5   2.0       0.59   11.0   2.0    1.8  1  PRC2_HTH_1   Polycomb repressive complex 2 tri-helical domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.9   0.1   6.9e-54   1.6e-50       1     161 [.       5     166 ..       5     167 .. 0.99

  Alignments for each domain:
  == domain 1  score: 170.9 bits;  conditional E-value: 6.9e-54
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Klv++G ++vGK++l+++fv++ + ++y++Ti +d+y+k+ie+d+k   lei+DTAG  +f+++rely+++++g+llvy++t+r+s++++ ++ e++ r
  CCD24696.1   5 KLVVLGAGGVGKSCLTVQFVQGVYLDTYDPTI-EDSYRKTIEIDNKVFDLEILDTAGVAQFTAMRELYIKSGMGFLLVYSVTDRQSLDELMELREQVLR 102
                 99******************************.****************************************************************** PP

                 HST.TTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vae.envpivLvGnKvDleekravsteegeelakelg.lkfletSAktnenveeafeellreil 161
                 +++ ++vp+vLvGnK+Dl+++r++s eeg e+++ +g ++f+etSA  + nv+e+f +l+r+i+
  CCD24696.1 103 IKDsSKVPMVLVGNKADLNDERVISVEEGIEVSSTWGkVPFYETSALLRSNVDEVFVDLVRQIM 166
                 **9988*******************************9***********************997 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   2.5e-20   5.7e-17       1     120 []       5     120 ..       5     120 .. 0.80

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 2.5e-20
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHH... CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlk... 96 
                 K+v++G +gvGK++l  +fv++ + +++++ti  ++  k++ +i+     +  k + l+i DtaG  +f ++++ly+++   ++lvy  ++ ++l+   
  CCD24696.1   5 KLVVLGAGGVGKSCLTVQFVQGVYLDTYDPTIEDSYR-KTI-EID-----N--KVFDLEILDTAGVAQFTAMRELYIKSGMGFLLVYSVTDRQSLDelm 94 
                 99*******************************9885.555.333.....2..5699******************************866555554000 PP

                 HHHHHHHHH..CSSS-EEEEEE-TTT CS
         Roc  97 eWlkelkkv..agkspvilvgnkiDl 120
                 e  +++ +   ++k p++lvgnk+Dl
  CCD24696.1  95 ELREQVLRIkdSSKVPMVLVGNKADL 120
                 45555554422345699*******95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.1   1.5e-11   3.5e-08      13     172 ..       2     162 ..       1     165 [. 0.80

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 1.5e-11
                 TEEEEEEEESTTSSHHHHHHHHHHSS.CEECSSSSSEEE.EEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHH CS
         Arf  13 kelrilllGLDnaGKtTilkklklee.lvttvPTigfnv.eelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkal 107
                 +++++++lG  + GK+ +  ++ ++  l+t  PTi     +++ei  k +++++ D  G  +   + + Y ++  + + v  ++dr+ l+e  e  +++
  CCD24696.1   2 RDYKLVVLGAGGVGKSCLTVQFVQGVyLDTYDPTIEDSYrKTIEIdnKVFDLEILDTAGVAQFTAMRELYIKSGMGFLLVYSVTDRQSLDELMELREQV 100
                 689***************99998886167789***865425666633668999***************************************99999** PP

                 CTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHH CS
         Arf 108 leeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewls 172
                 l+ ++ ++v++++++NK Dl++      ++e +++++     k+   ++sa+ +++++e +  l+
  CCD24696.1 101 LRIKDSSKVPMVLVGNKADLNDER-VISVEEGIEVSSTW--GKVPFYETSALLRSNVDEVFVDLV 162
                 ********************8753.44556666665554..445556677777777776666555 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   6.5e-09   1.5e-05      61     189 ..      44     162 ..       5     168 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 6.5e-09
                 EEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHHH CS
    GTP_EFTU  61 isleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrke 154
                 i++  + k + + ++Dt G ++F+   +  ++   g +lv ++++       ++  e+vlr+  + +vp++++ NK+D  ++++  + e ++ +     
  CCD24696.1  44 IEI--DNKVFDLEILDTAGVAQFTAMRELYIKSGMGFLLVYSVTDRqsldeLMELREQVLRIKDSSKVPMVLVGNKADLNDERVISVEEGIEVSS---- 136
                 334..488999**************99999999999999999995455555*********************************99999999443.... PP

                 HHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHH CS
    GTP_EFTU 155 eklekygekgekevpvvfgSalkgegvktllealv 189
                        + g  +vp++ +Sal   +v++++  lv
  CCD24696.1 137 -------TWG--KVPFYETSALLRSNVDEVFVDLV 162
                 .......234..58999999999999998554444 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00099       2.2     101     129 ..       5      33 ..       1      67 [. 0.69
   2 !    8.5   0.0   0.00075       1.7      34      94 ..      96     158 ..      77     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00099
                  EEEEECSTTSSHHHHHHHHCTT-----S- CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpelelktge 129
                    v++G  GvGKS L  ++++   l t +
   CCD24696.1   5 KLVVLGAGGVGKSCLTVQFVQGVYLDTYD 33 
                  57899**********99888877666655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00075
                  HHHHHHHHHHHTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTT.SEEEE--TTTHTTHHHHH CS
  RsgA_GTPase  34 lldrfLvlaeekgiepvivlnKiDlleeee.eleelkeelealg.yevllvsaktkegleelk 94 
                  l +++L +  ++++++v+v nK+Dl +e+  ++ee  e  +++g ++++ +sa  +++++e+ 
   CCD24696.1  96 LREQVLRIKDSSKVPMVLVGNKADLNDERViSVEEGIEVSSTWGkVPFYETSALLRSNVDEVF 158
                  34688999999****************999899999999999995677778877777777765 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     3e-06    0.0067       2     114 .]       6     117 ..       5     129 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3e-06
                 EEEEESTTSSHHHHHHHHHT.....S.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT..TTCSH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg.....e.kaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdas..eeklk 91 
                  +++G   vGKS L  + ++     +    ++d   +T++i  + ++     +e++Dt+G +    +   +++ + +      l+  v d +   ++l 
  CCD24696.1   6 LVVLGAGGVGKSCLTVQFVQgvyldTyDPTIEDSYRKTIEIDNKVFD-----LEILDTAG-VA---QFTAMRELYIKSGMgFLLVYSVTD-RqsLDELM 94 
                 6899***************8444322455777777777777777664.....9*******.54...122444444433322233333444.34533577 PP

                 HHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  92 pldeeleelleeakkplilvlnk 114
                 +l+e++ ++++++k p++lv nk
  CCD24696.1  95 ELREQVLRIKDSSKVPMVLVGNK 117
                 77788888877788999998887 PP

>> RESP18  RESP18 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.8   2.8e-05     0.063      41      95 ..     160     215 ..     158     227 .. 0.76
   2 ?   -0.3   0.1      0.61   1.4e+03      54      85 ..     223     254 ..     217     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-05
      RESP18  41 dltqevltqkmerisrlrpqdpclkdrkavfptrttgvr.gkqeeklqllfpkspv 95 
                 dl+++++ ++me i+    ++p ++ r++ +++  + +r g ++++ q l+ + p 
  CCD24696.1 160 DLVRQIMRNEMESIANAEIRNPSMQRRNGSSTNPSPVARsGARQQQQQQLRNQEPN 215
                 8999******************9999999988887777743334444555555454 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.61
      RESP18  54 isrlrpqdpclkdrkavfptrttgvrgkqeek 85 
                  sr +pq + +k  ++     t +v++ ++ k
  CCD24696.1 223 TSRTKPQRSGQKAVSGQQLSSTNAVNSSSDKK 254
                 68888998888888888888887777665554 PP

>> PRC2_HTH_1  Polycomb repressive complex 2 tri-helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.0   0.00026      0.59      11      72 ..     155     215 ..     152     264 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00026
  PRC2_HTH_1  11 deiFveLvnaLmqyeekeeeseseskekksek................kkkkkkaeedeekeekikkekskekkkfpa 72 
                 de+Fv+Lv+ +m++e+++ ++++ ++ +++++                ++++++                  +++ p+
  CCD24696.1 155 DEVFVDLVRQIMRNEMESIANAEIRNPSMQRRngsstnpspvarsgarQQQQQQL-----------------RNQEPN 215
                 99*************9998666555544444435555555555554431111111.................222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1395  (0.0778069); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2064.38
//
Query:       CCD24697.1  [L=340]
Description: hypothetical protein NDAI_0D03830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-120  401.2   0.0   3.4e-120  401.0   0.0    1.0  1  ALAD      Delta-aminolevulinic acid dehydratase


Domain annotation for each model (and alignments):
>> ALAD  Delta-aminolevulinic acid dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.0   0.0  1.9e-124  3.4e-120       8     317 .]      22     337 ..      18     337 .. 0.98

  Alignments for each domain:
  == domain 1  score: 401.0 bits;  conditional E-value: 1.9e-124
                 GSSHHHHHHC-S----GGGEEEEEEEESS-SS-EE-TTSTT-EEEEGGGHHHHHHHHHHTT--EEEEEEE-.SS..-BSS-GGGGSTTSHHHHHHHHHH CS
        ALAD   8 rksealrelvretrlsasdlilplfvkegeeekeeiksmpgvyrlsvdelvkeveelvklgikavllFgvp.ee..kdeegsealnedglvqrairaik 103
                 ++++ lre+++e++l++++li+plf++++e+   +i+s+p+++r++v++l++ ++ lv++g+++v+lFgvp +e  kd+ g++a++++g+v +ai+ ++
  CCD24697.1  22 YNHPLLREWQNERQLTKNMLIFPLFISDNEDDCCAIESLPNIKRFGVNKLKEYMKPLVAKGLRSVILFGVPlKEgsKDPVGTSADDPQGPVIQAIKLLR 120
                 57899******************************************************************75478*********************** PP

                 HH-TTSEEEEEE-STTTBSS-SSSEE.ESS.EEHHHHHHHHHHHHHHHHHCT-SEEEE-S--TTHHHHHHHHHHHTT-.TT-EEB---EEB--CGGHHH CS
        ALAD 104 eevpelvvitDvclceytshGhcgil.eekevdndetlellakvavsqaeaGadivapSdmmDgrvaaireaLdeagf.eevailsYsaKyaSafYgPF 200
                 +e+p+l++++DvclceytshGhcg+l ++++++ +++++++a+vav++a+aGa++vapSdm+Dgr+++i++ L +ag+ +++ +lsYsaK++ ++YgPF
  CCD24697.1 121 REFPDLYIMCDVCLCEYTSHGHCGVLyDDGTINREKSVARIAAVAVNYAKAGAHCVAPSDMIDGRIKEIKRGLINAGLaHKTFVLSYSAKFSGNLYGPF 219
                 **************************66777**********************************************9889****************** PP

                 HHHHT---S.S--TTTSB-TT-HHHHHHHHHHHHHTT-SBEEEES-TTGHHHHHHHHTT-.SS-EEEEE-HHHHHHHHHHHHTTSS-HHHHHHHHHHHH CS
        ALAD 201 rdaaesapsfgdrktYqmdpansrealreveldleeGADivmvKPalaylDiirevkeef.dlpvaayqvSGEYamikaaaengwldekkvvlEsllsi 298
                 rdaa saps gdrk+Yq++   +  a r++++dl eGAD ++vKP+++ylDi+r+++e + dlp++ay+vSGEYam++aaae+g++d k++++Es++++
  CCD24697.1 220 RDAACSAPSSGDRKCYQLPSGGRGLARRALRRDLGEGADGIIVKPSTFYLDIMRDASEICnDLPICAYHVSGEYAMLHAAAEKGIIDLKTMAFESHQGF 318
                 ************************************************************99************************************* PP

                 HHTT-SEEEETTHHHHHH. CS
        ALAD 299 kRAGadliltYfakevakl 317
                  RAGa li+tYfa++++++
  CCD24697.1 319 LRAGARLIITYFAPQFLEW 337
                 ***************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       283  (0.0157845); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2352.54
//
Query:       CCD24698.1  [L=279]
Description: hypothetical protein NDAI_0D03840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-30  105.2   0.1    4.5e-30  104.2   0.1    1.5  1  Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase


Domain annotation for each model (and alignments):
>> Pyridox_oxase_2  Pyridoxamine 5'-phosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.2   0.1   2.5e-34   4.5e-30       1      99 [.       5     101 ..       5     102 .. 0.97

  Alignments for each domain:
  == domain 1  score: 104.2 bits;  conditional E-value: 2.5e-34
                      --TTHHHHHHHHHHTT-GGGGEEEEEEE-T.TS-EEEEEEE---B-TT...SS-.EEEEEETTSHHHHHHH.H--EEEEEEEETTTTEEEEEEE CS
  Pyridox_oxase_2   1 sapWrsllesalkknkkkkstefqlaTvdeeegkPrvRtvvfRgfleekkeesdvltfttDvrseKvkqlessnaaveavfylketreQfRisG 94 
                      +apW++++ +++k+n+++++t fq+aT+d+ ++ PrvRtvvfR+fl+++k ++++ltf++D+rs+K+   +  ++ +e +fy+++t+eQ+R++G
       CCD24698.1   5 MAPWVPTFIQSCKNNTQQPFTPFQFATIDAVNNLPRVRTVVFRDFLFHDK-QTNILTFNSDLRSHKLCGNT-ASTPFESCFYFPQTWEQYRLTG 96 
                      68***************************99999**************97.****************9999.79******************** PP

                      EEEEE CS
  Pyridox_oxase_2  95 kafvi 99 
                      ++fvi
       CCD24698.1  97 QCFVI 101
                      ***98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2027.47
//
Query:       CCD24699.1  [L=474]
Description: hypothetical protein NDAI_0D03850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   6.7e-100  334.6   0.0   7.7e-100  334.4   0.0    1.0  1  Aminotran_3  Aminotransferase class-III


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.4   0.0  4.3e-104  7.7e-100       9     405 ..      45     468 ..      37     469 .. 0.96

  Alignments for each domain:
  == domain 1  score: 334.4 bits;  conditional E-value: 4.3e-104
                  SCEEEEEEEBTEEEETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHH...HHHCT-..SEEEEESSHHHHHHHH CS
  Aminotran_3   9 lllvitkaeGvyltdvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekl...lklapkgldkvflansGseAvetA 103
                  ++++ +k+ G+y++dvdg++ylDl+++ia+++lG+++P++++++k++++   +v ++al+n p+ +l+  l   lk apkg d+v    sG++A+e A
   CCD24699.1  45 FVADFEKSIGNYIVDVDGNTYLDLYAQIASIALGYNNPALIEVAKSPEMIRALVDRPALGNFPSKDLESMLkqiLKFAPKGQDHVWSGLSGADANELA 142
                  458899*********************************************************9999988877799********************** PP

                  HHHHHHHHHHTSHCTT-....................EEEEETTT---SSHHHHHHSS--TTTTTTCTTB...-TSEEEE-TT..BGGGTB-HHHHHH CS
  Aminotran_3 104 lKlarkyarekkatekt....................kiiafkgafHGrtlgalsvtgskkkyktlfgpf...lpevvrlkyp..deevlkeneeeea 176
                  +K+a++y+++k+++ k                     ++++fk afHGr++++ s+t sk+++k ++++f    +e+++ kyp  d+ ++++n++e++
   CCD24699.1 143 FKAAFMYYKNKQRQGKDftkeenesvmnnlppgspdlAVLSFKRAFHGRLFASGSATCSKPIHKLDLPAFrwpHAEFPSYKYPlgDKANAEFNQREDD 240
                  ************9999999***************************************************9997888887777337889999****** PP

                  HHHHHHHHHHCHTCCCEEEEEE-SCETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGCTS--..SEEEE-.GGGGTT.SS-E CS
  Aminotran_3 177 alleelealekkkkdevaAvivEpiqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAlehagvsp..Dlmtla.KaltgG.lpls 270
                  ++l+ +e+l+k++   vaA+++Epiq+egG+++as+ fl++lr+l+ k++v+ i+DEvqtG+G TGk++++e+a+++p  Dl+t++ K +++G +++ 
   CCD24699.1 241 RCLKNVEELIKTWPIPVAALLIEPIQSEGGDNHASKYFLQGLRDLTLKYNVVYIIDEVQTGVGSTGKFWCHEYADITPpvDLVTFSkKFQSAGyFFHD 338
                  ****************************************************************************9999******999********* PP

                  EEEEEHHHHTTS-TTSB--TTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-.TTEEEEEEE..TTEEEEEEBCCCETTCHHHHH CS
  Aminotran_3 271 avlataevmqalapgshgsTfgGnplacavalavleiieeekllenaqelgaalkegLeelqkky.evikevRgk..Glmiaielkeeaevkekeilk 365
                   ++ + ++++++      +T+ G+p ++++a a+ e i +++ll + +++ga++ ++Le lqk++   ++++Rgk  G++ia++l+++++++   +lk
   CCD24699.1 339 PAFIPSAPYRQF------NTWCGEPARMLIAGAIGEEIVKNDLLSQCSRVGAYMFKKLEGLQKEHpTLFHNLRGKdrGTFIAWDLPSSEQRD--LLLK 428
                  ************......**********************************************999*******999*************66..799* PP

                  HHHHCTEE-EEETTTEEEE---TT--HHHHHHHHHHHHHH CS
  Aminotran_3 366 kakekGvlilsaGdnvirllppliitdeeidelleilkka 405
                   ++++G +++++  n++rl+p+l+++++++d +++ l k 
   CCD24699.1 429 TLRANGCNVGGCSTNAVRLRPSLTFEEKHCDIFINVLAKS 468
                  **********************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       359  (0.0200234); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3529.84
//
Query:       CCD24700.1  [L=121]
Description: hypothetical protein NDAI_0D03860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-31  108.8   0.1    1.4e-31  108.6   0.1    1.0  1  ATP-synt_F      ATP synthase (F/14-kDa) subunit
  ------ inclusion threshold ------
      0.062   12.5   0.0      0.065   12.4   0.0    1.1  1  DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
      0.082   13.0   0.1       0.11   12.6   0.1    1.1  1  DUF2251         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> ATP-synt_F  ATP synthase (F/14-kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6   0.1   2.4e-35   1.4e-31       1      91 []       8     115 ..       8     115 .. 0.99

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 2.4e-35
                 EEEEESHHHHHHHHHTTCEEEE.................CSSHHHHHHHHHHHHH.HTTEEEEEEEHHHHCCCHHHHHHCTCSSSSEEEEESCSCCGGS CS
  ATP-synt_F   1 iavIGdedtvtgfrlaGvgeve.................vtdeeeieealkelle.redigiilitekiaeeirelideykeealPaileIPskegpyd 81 
                 iavIGdedt+tg++laG+g+v+                 +t++ee+ +++++++e r+di+i+li++++ae ir+++d++ + ++PaileIPsk++pyd
  CCD24700.1   8 IAVIGDEDTTTGLLLAGIGQVTnnnsnltdknffiyqdgKTTREEVSKIFEHYTEeRNDIAILLINQHVAEIIRSQVDSFVN-PFPAILEIPSKDHPYD 105
                 8*****************************************************99**************************.**************** PP

                 HHCHHHHHHH CS
  ATP-synt_F  82 eekdsvrkkv 91 
                 +ekdsv+k+v
  CCD24700.1 106 PEKDSVLKRV 115
                 *******998 PP

>> DXP_synthase_N  1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.1e-05     0.065     132     204 ..       3      78 ..       1      97 [. 0.67

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.1e-05
  DXP_synthase_N 132 ekkkvvaviGDgaltgGmafealnnigelkkkl....lvilNdNemsisknvGalskylskllsskayeklkkevkk 204
                     +k++++aviGD   t+G+ + ++ ++++++++l    + i+ d +    ++v  + ++ ++ +++ a+  ++++v +
      CCD24700.1   3 DKRTLIAVIGDEDTTTGLLLAGIGQVTNNNSNLtdknFFIYQDGKT-TREEVSKIFEHYTEERNDIAILLINQHVAE 78 
                     57899*****************999988887762222456665543.445566655555555555555555555555 PP

>> DUF2251  Uncharacterized protein conserved in bacteria (DUF2251)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.9e-05      0.11      10      75 ..       8      76 ..       2      86 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.9e-05
     DUF2251 10 yavvFeddgetGYfYa.ldkeqeeqe.vld.alliYnvedveekkeerkveilWsedgtkaaLlingya 75
                 av+ ++d+ tG + a + + ++++  + d  ++iY+  +++ ++  +++e   +e    a+Llin+ +
  CCD24700.1  8 IAVIGDEDTTTGLLLAgIGQVTNNNSnLTDkNFFIYQDGKTTREEVSKIFEHYTEERNDIAILLINQHV 76
                67888999999*999833333333334666369*******************999***********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 968.00
//
Query:       CCD24701.1  [L=321]
Description: hypothetical protein NDAI_0D03870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-62  209.0   4.5    9.8e-62  208.5   4.5    1.2  1  Transcrip_reg  Transcriptional regulator
  ------ inclusion threshold ------
       0.02   15.2   0.6      0.051   13.9   0.6    1.7  1  LPP20          LPP20 lipoprotein


Domain annotation for each model (and alignments):
>> Transcrip_reg  Transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.5   4.5   1.1e-65   9.8e-62       1     240 []      39     307 ..      39     307 .. 0.89

  Alignments for each domain:
  == domain 1  score: 208.5 bits;  conditional E-value: 1.1e-65
                    .XCHHCCCCCCHCCCCHHHHHHHHHHHHHHHHHTHH-S-GGG-HHHHHHHHHHHHTT--HHHHHHHHHHCCST..S.TS.--EEEEEEEEETTTEE CS
  Transcrip_reg   1 skWsnikhkKaandakkgklftklakeItvaakeeggpDpesNprLraaiekakkanvpkdnIeraIkkgage..kseganyeevtyegygpggva 94 
                    +kWs+ikh+K++nda k+k+ +k++ +It a+k+ +       ++L++++e a k+n+pk ++e+aI+kg+ +  +++++n + ++yeg+gpggva
     CCD24701.1  39 NKWSTIKHQKMKNDAIKNKAANKISLQITSAVKA-N-----DTTSLNNLVELAMKSNIPKRVVENAINKGKIGtiGDGSENNNLCMYEGIGPGGVA 128
                    8********************************7.3.....3689**************************9875545599999************ PP

                    EEEEEEES-HHHHHHHHHHHHHHTT-EEE-TTSSGGGEEEEEEEEEECCHCT-HHHHHHHHHHHH.TESEEEEE...................... CS
  Transcrip_reg  95 vivealTdnknrtaaevrsifsknggnlgesgsvsflFerkgvivveekeeevdedelleaaiea.GaeDveed...................... 167
                    ++ve+ Tdnknrt+  vrs+f k++g++   +++s+lF+ kg++ v +++e ++e++++e+ ie+ G+eD+e                        
     CCD24701.1 129 FVVECSTDNKNRTVGLVRSAFLKANGSM---TPTSYLFDVKGYLLVVPPKELDNEEKVFEKSIEIdGIEDIELLkgeeegdenrdsttirsvsdtk 221
                    ****************************...***************9999***************99*****889998888777777777776665 PP

                    ...TTTC..........EEEEEEGGGHHHHHHHHHHTTT---SE.EEEEEEESS-EE-...-HHHHHHHHHHHHHHHTSTTEEEEEESE CS
  Transcrip_reg 168 ...eeee.........vievitepedlaavkkaLeeaggleves.aeleyipkeevel...deeeaekleklidaLeeldDVqnvytNi 240
                       +  +         +  ++ +p+d+++v+++L+++g++ +e+  + +yi+k+++++   de+ +e+l+kli++Le++d+ +  ytN+
     CCD24701.1 222 qgvD--NnenlagekyYEIIVGDPADTSQVANELQREGFT-IEQqIGNKYIAKDDMKVnidDENVMERLQKLISQLEAIDEFRGFYTNC 307
                    5551..055677788544555**************99765.6655*********9999884489***********************95 PP

>> LPP20  LPP20 lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.6   5.7e-06     0.051      25      90 ..      52     116 ..      17     122 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.7e-06
       LPP20  25 raAkqnAlrdiaeqiqvqvksssstqetsaavqnsettnesvsqvvesvlrgieivev.eeledgky 90 
                 +a k++A+++i+ qi   vk++ +t+  +++  +  + ++  ++vve+ +++ +i  +   +e++++
  CCD24701.1  52 DAIKNKAANKISLQITSAVKANDTTS--LNNLVELAMKSNIPKRVVENAINKGKIGTIgDGSENNNL 116
                 78899999999999999999999994..49999******************9999988666667665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1251  (0.0697752); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2559.86
//
Query:       CCD24702.1  [L=584]
Description: hypothetical protein NDAI_0D03880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-65  219.4   2.8    1.7e-65  219.4   2.8    4.2  5  Mid2        Mid2 like cell wall stress sensor


Domain annotation for each model (and alignments):
>> Mid2  Mid2 like cell wall stress sensor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.6      0.32   5.8e+03      36      36 ..     157     157 ..     122     181 .. 0.54
   2 ?   -5.0   3.9         1   1.8e+04      18      37 ..     185     204 ..     168     245 .. 0.60
   3 ?   -3.0   1.3      0.32   5.7e+03      14      23 ..     265     274 ..     237     289 .. 0.46
   4 !  219.4   2.8   9.3e-70   1.7e-65       2     149 .]     293     441 ..     292     441 .. 0.97
   5 ?   -4.3   5.1       0.8   1.4e+04     122     147 ..     524     549 ..     515     572 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.32
        Mid2  36 s 36 
                 s
  CCD24702.1 157 S 157
                 2 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 1
        Mid2  18 lyttvtytptataessnksk 37 
                 +++ +  ++t++a+ +++s+
  CCD24702.1 185 TSSLIISSSTSSATIQSTSS 204
                 44444444444443333322 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.32
        Mid2  14 iLsdlyttvt 23 
                   s ++ tv+
  CCD24702.1 265 TTSSSSFTVS 274
                 1222222222 PP

  == domain 4  score: 219.4 bits;  conditional E-value: 9.3e-70
        Mid2   2 ektitsiiegktiLsdlyttvtytptataessnk.skssGLskknrniviGcvvGigvPlllvillllyifCikskrtdfidsdGkvitaYktnkltkl 99 
                 +kt+tsii+gktiLs++ytt+tytptata+ssn+ +++sGL+kknrniv+Gcv+Gig+Plll+i l+ly+fCiksk+t+fidsdGkvitaYktn+l+kl
  CCD24702.1 293 RKTVTSIIHGKTILSNYYTTITYTPTATANSSNSkNSHSGLTKKNRNIVLGCVLGIGIPLLLLIGLILYHFCIKSKSTNFIDSDGKVITAYKTNNLHKL 391
                 589***************************9998799************************************************************** PP

        Mid2 100 wkallGkki.teeyesdsPlGsslsddeeldlakaenndesltvevknlds 149
                 w+ l+Gkk+ +eey+s+ PlG s+++d+ ++ ++++n+d  ++++++n d+
  CCD24702.1 392 WNLLIGKKNnNEEYHSNLPLG-SRNNDGGENGYNFDNDDILVQRNIRNDDG 441
                 *******9989**********.899999********************996 PP

  == domain 5  score: -4.3 bits;  conditional E-value: 0.8
        Mid2 122 lsddeeldlakaenndesltvevknl 147
                  ++de+ +++++++n+ +++++++n 
  CCD24702.1 524 NDEDEDDNQNSFNDNEATNNINIHNN 549
                 55566666666677777777666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2050  (0.11434); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                       120  (0.00669307); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.18u 0.33s 00:00:01.51 Elapsed: 00:00:00.52
# Mc/sec: 3366.08
//
Query:       CCD24703.1  [L=399]
Description: hypothetical protein NDAI_0D03890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.36
# Mc/sec: 3348.51
//
Query:       CCD24704.1  [L=237]
Description: hypothetical protein NDAI_0D03900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-51  171.7   0.6    8.1e-51  171.3   0.6    1.2  1  Thg1      tRNAHis guanylyltransferase
      1e-36  125.8   0.1      2e-36  124.8   0.1    1.4  1  Thg1C     Thg1 C terminal domain


Domain annotation for each model (and alignments):
>> Thg1  tRNAHis guanylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.3   0.6     9e-55   8.1e-51       1     125 []       6     138 ..       6     138 .. 0.96

  Alignments for each domain:
  == domain 1  score: 171.3 bits;  conditional E-value: 9e-55
        Thg1   1 yeyvkefeqddkllpntlivvRiDGrgFhkfskkhkfekPnDeralklmneaakelvkef.edivlaYgqSDEislvlsketklynrraqklvslvasl 98 
                 +eyv+efe++d llp+++ivvRiDG++Fh+fsk ++f+kPnD+ralklmn+aak++v ++ +d++laYg+SDE+s++l+++t+l+nrr++k+ sl++sl
  CCD24704.1   6 FEYVREFESHDVLLPQCYIVVRIDGKKFHEFSKYYEFAKPNDDRALKLMNAAAKNVVLQYrNDVILAYGESDEYSFILKSDTSLFNRRRDKISSLFVSL 104
                 69**********************************************************55************************************* PP

        Thg1  99 ftaafvkllskaf.......eelpsFDarvvlyp 125
                 ft+++v+l++k+f       ++lp+FD+r+v+yp
  CCD24704.1 105 FTSNYVTLWPKFFvgvelhpKHLPFFDSRCVQYP 138
                 *************9998764367**********9 PP

>> Thg1C  Thg1 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.1   2.2e-40     2e-36       2      79 ..     142     219 ..     141     229 .. 0.96

  Alignments for each domain:
  == domain 1  score: 124.8 bits;  conditional E-value: 2.2e-40
       Thg1C   2 nlrDYlsWRqvDchinnlYNttFWalvqkgglteqeaeeeLkgtlskdkneiLfsefginYnnepeifrkGsvlvrek 79 
                  ++DYlsWR vD+hinnlYNt+FW+l+q  g++++eae++L+gt s+ k+eiLf+++ginYnnepe+++kGs ++r+ 
  CCD24704.1 142 AIKDYLSWRFVDTHINNLYNTAFWKLIQVCGMNPREAENRLSGTYSSGKQEILFKDCGINYNNEPEMYKKGSLITRKG 219
                 79************************************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 1657.74
//
Query:       CCD24705.1  [L=276]
Description: hypothetical protein NDAI_0D03910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.081   13.4   0.1      0.081   13.4   0.1    3.1  3  PhoR      Phosphate regulon sensor protein PhoR
       0.24   10.7  13.9      0.022   14.1   6.5    2.5  2  UPF0121   Uncharacterised protein family (UPF0121)


Domain annotation for each model (and alignments):
>> PhoR  Phosphate regulon sensor protein PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.8     0.045   4.1e+02      20      42 ..      25      48 ..      22      73 .. 0.62
   2 ?   -1.0   0.6      0.27   2.4e+03      12      32 ..     125     145 ..     114     157 .. 0.54
   3 ?   13.4   0.1     9e-06     0.081      10      84 ..     190     268 ..     184     270 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.045
        PhoR 20 gllvgalaalll.lalllllawhl 42
                 + vg+ + l++ ++  l  ++h+
  CCD24705.1 25 IWTVGHTMTLVFgALFTLTYFFHV 48
                588888888888533333334443 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.27
        PhoR  12 lllaallvgllvgalaallll 32 
                  +++++l+++l g  ++  ll
  CCD24705.1 125 QAMLMALLWFLGGGKSFYKLL 145
                 344444777777766655554 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 9e-06
        PhoR  10 allllaal.lvgllvgalaallllallll...lawhlyqllrLsrWLrkpkklepPdgsGlWeeifdglyrlqkrnrkr 84 
                 +++++++l  + +  g  +++l++ l ++   l +  y +  L r L+k +k+ pP+ +  W+ i + +y   k +++r
  CCD24705.1 190 FIVIALVLdTLLMKNGSSGIMLVIYLGIYwlrLNFSPYAQITLLRILSKFDKKIPPKHKNNWDTIKRFIYAKMKAHERR 268
                 33333333344555566666666555444112556778888899**************************999988876 PP

>> UPF0121  Uncharacterised protein family (UPF0121)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.6     0.097   8.7e+02      24      46 ..      28      54 ..      19      93 .. 0.50
   2 ?   14.1   6.5   2.5e-06     0.022      79     205 ..     116     233 ..      67     260 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.097
     UPF0121 24 ltrlltllf....tvlyliplflsssy 46
                + + +tl+f    t+ y++ ++l  +y
  CCD24705.1 28 VGHTMTLVFgalfTLTYFFHVLLFFKY 54
                555555544111144444422222233 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.5e-06
     UPF0121  79 erllledsvhyLlysliFlfsaPvt.lallPvflfallHaasytktlldvlgsnslvvarllkvislvesqaeniLrliAlieivlmpllivllllgka 176
                   ll+  +++++l +l++++    +   llP+++ + +H++   +   ++ ++++          + ++  + ++L+l++ +ei+++ +l++  ll k+
  CCD24705.1 116 YDLLSSSNFQAMLMALLWFLGGGKSfYKLLPFMILSYMHLLDKDN-EFNTESKKK---------EDQLTMANVHLLHLVSYSEIFIVIALVLDTLLMKN 204
                 46889999********999987655168********999876333.333222222.........24556677889***************998776654 PP

     UPF0121 177 ..slllpllYyqfLklRYsSrrnPytreafs 205
                   s +++++Y     lR +  ++Py + ++ 
  CCD24705.1 205 gsSGIMLVIYLGIYWLRLN--FSPYAQITLL 233
                 22678999***********..****998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2036.06
//
Query:       CCD24706.1  [L=108]
Description: hypothetical protein NDAI_0D03920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-39  133.9   7.0    2.2e-39  133.7   7.0    1.0  1  Ribosomal_S25  S25 ribosomal protein
    0.00026   20.7   0.1     0.0004   20.1   0.1    1.3  1  FtsK_gamma     Ftsk gamma domain
  ------ inclusion threshold ------
      0.032   13.5   0.1      0.037   13.3   0.1    1.2  1  EAP30          EAP30/Vps36 family
      0.036   13.6   0.1      0.056   13.0   0.1    1.3  1  HTH_CodY       CodY helix-turn-helix domain
      0.082   12.7   0.0       0.13   12.0   0.0    1.3  1  HTH_DeoR       DeoR-like helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Ribosomal_S25  S25 ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.7   7.0     6e-43   2.2e-39       2     101 .]       5     104 ..       4     104 .. 0.98

  Alignments for each domain:
  == domain 1  score: 133.7 bits;  conditional E-value: 6e-43
  Ribosomal_S25   2 ekkakkakaaaakaggkakkKKwskgkvkdklnnavlfdketydkllkevpkyklitpsvvserlkingslArraLreleekgliklvskhraqvi 97 
                    ++ +k+akaaaa+aggk++kKKwsk+ +kdk+++av++d+e +d+++kevp+y+++++sv+++rlki gs+Ar aLr+le++g+ik+vskh++q i
     CCD24706.1   5 QQLSKAAKAAAAMAGGKKSKKKWSKNNHKDKAQHAVILDQEKLDRIMKEVPTYRYVSVSVLVDRLKIGGSMARVALRDLEKQGIIKPVSKHSKQAI 100
                    7899******************************************************************************************** PP

  Ribosomal_S25  98 Ytra 101
                    Ytra
     CCD24706.1 101 YTRA 104
                    **95 PP

>> FtsK_gamma  Ftsk gamma domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   1.1e-07    0.0004       5      60 ..      45     100 ..      43     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.1e-07
  FtsK_gamma   5 elfeeavelvveegkaStSllQRrlriGYnRAarlidqLeeeGiVgpaegskpReV 60 
                 e ++++++ v + + +S+S l  rl+iG + A   + +Le++Gi+ p  +  +  +
  CCD24706.1  45 EKLDRIMKEVPTYRYVSVSVLVDRLKIGGSMARVALRDLEKQGIIKPVSKHSKQAI 100
                 567778888889999********************************987766665 PP

>> EAP30  EAP30/Vps36 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1     1e-05     0.037     174     232 ..      34      89 ..       4      90 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1e-05
       EAP30 174 ntdqvevlevakrlvsllaekssgggvtaselaeeeenlgwsvarakeaLeelereGll 232
                 ++ q +v+   ++l ++++e  + ++v++s l+++   l++  ++a+ aL++le++G++
  CCD24706.1  34 DKAQHAVILDQEKLDRIMKEVPTYRYVSVSVLVDR---LKIGGSMARVALRDLEKQGII 89 
                 3334455555566667777777779*******555...*******************86 PP

>> HTH_CodY  CodY helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   1.6e-05     0.056       7      37 ..      62      92 ..      58     104 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
    HTH_CodY  7 askiaDriGitrsvivnaLrkLesaGiiesr 37
                 s++ Dr+ i  s+   aLr Le  Gii   
  CCD24706.1 62 VSVLVDRLKIGGSMARVALRDLEKQGIIKPV 92
                6999************************865 PP

>> HTH_DeoR  DeoR-like helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.7e-05      0.13       3      45 ..      48      90 ..      46      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.7e-05
    HTH_DeoR  3 eqilellkqqgklsveelvellgvSeaTiRRDLneLeeqgllt 45
                + i++ +   +++sv  lv++l++    +R  L+ Le+qg+++
  CCD24706.1 48 DRIMKEVPTYRYVSVSVLVDRLKIGGSMARVALRDLEKQGIIK 90
                5789999999******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1107  (0.0617435); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 793.10
//
Query:       CCD24707.1  [L=354]
Description: hypothetical protein NDAI_0D03930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-36  125.2   0.0    3.5e-36  124.5   0.0    1.4  1  AAA              ATPase family associated with various cellul
    3.9e-12   45.8   0.4      1e-11   44.4   0.4    1.7  1  AAA_lid_3        AAA+ lid domain
    5.8e-06   26.3   0.4    0.00011   22.2   0.4    2.7  1  AAA_5            AAA domain (dynein-related subfamily)
    1.2e-05   25.1   0.0    3.9e-05   23.5   0.0    1.8  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.3e-05   25.2   0.0    3.1e-05   24.0   0.0    1.7  1  AAA_14           AAA domain
    1.6e-05   25.1   0.0    3.3e-05   24.1   0.0    1.5  1  AAA_2            AAA domain (Cdc48 subfamily)
    1.8e-05   25.0   0.9     0.0043   17.3   0.2    3.2  2  AAA_22           AAA domain
    4.5e-05   23.9   0.4     0.0018   18.7   0.0    2.5  2  AAA_16           AAA ATPase domain
     0.0002   21.5   0.0    0.00065   19.9   0.0    1.9  2  AAA_33           AAA domain
    0.00044   20.0   0.0    0.00085   19.1   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
     0.0013   18.2   0.1     0.0026   17.2   0.1    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0014   19.1   0.0     0.0038   17.8   0.0    1.7  1  AAA_18           AAA domain
     0.0021   18.4   0.0     0.0054   17.1   0.0    1.8  1  RNA_helicase     RNA helicase
     0.0026   17.4   0.1     0.0063   16.1   0.0    1.6  2  AAA_25           AAA domain
     0.0028   17.6   0.0     0.0071   16.3   0.0    1.7  1  NACHT            NACHT domain
     0.0035   17.5   0.0     0.0071   16.5   0.0    1.5  1  Sigma54_activ_2  Sigma-54 interaction domain
     0.0061   16.3   0.0      0.011   15.4   0.0    1.4  1  AAA_24           AAA domain
     0.0064   15.9   0.0        2.8    7.3   0.0    2.4  2  TniB             Bacterial TniB protein
     0.0084   15.6   0.1      0.031   13.8   0.1    1.9  1  AAA_7            P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.011   15.6   0.4      0.083   12.8   0.0    2.4  2  Rad17            Rad17 P-loop domain
      0.014   15.3   0.0      0.021   14.7   0.0    1.3  1  Bac_DnaA         Bacterial dnaA  protein
      0.016   15.5   0.1        2.7    8.2   0.1    2.3  2  Hydin_ADK        Hydin Adenylate kinase-like domain
      0.027   13.7   1.3          4    6.6   0.0    2.8  3  KAP_NTPase       KAP family P-loop domain
      0.042   13.2   0.0       0.22   10.8   0.0    2.0  2  ATPase           KaiC
      0.044   13.8   0.0      0.079   13.0   0.0    1.4  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.046   12.9   0.0      0.073   12.2   0.0    1.4  1  DUF815           Protein of unknown function (DUF815)
      0.047   13.6   0.4        0.3   11.0   0.0    2.2  3  ATPase_2         ATPase domain predominantly from Archaea
      0.048   13.9   0.0      0.091   13.0   0.0    1.5  1  AAA_28           AAA domain
       0.06   12.2   0.0       0.13   11.1   0.0    1.5  2  DNA_topoisoIV    DNA gyrase/topoisomerase IV, subunit A
      0.077   13.4   0.0       0.23   11.9   0.0    1.9  2  AAA_17           AAA domain
      0.081   12.6   0.0       0.32   10.7   0.0    2.0  2  Sigma54_activat  Sigma-54 interaction domain
       0.11   11.7   0.0       0.18   11.0   0.0    1.3  1  Zeta_toxin       Zeta toxin
       0.11   12.2   0.0       0.19   11.4   0.0    1.3  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.5   0.0   6.5e-39   3.5e-36       1     131 [.     128     255 ..     128     256 .. 0.97

  Alignments for each domain:
  == domain 1  score: 124.5 bits;  conditional E-value: 6.5e-39
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vllyGppG+GKT+lak++a e+g++f+++ +s+l++ky ges+k + +lf+ a + + p+i+fiDEid++ ++r++ ++e++ ++ ++++t +dg+ ++
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLALESGANFISVRMSTLMDKYYGESNKMVDALFSLANKIE-PCIIFIDEIDSVLRERTSFDHEVTANLKAEFMTLWDGLISS 225
                 79***************************************************9998.****************999********************97 PP

                 SSTEEEEEEESSGGGSTHHHHSTTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallrgRfdrkieie 131
                  ++++v+gatnr++++d+a+l +R+ ++++i+
  CCD24707.1 226 -RRIMVVGATNRINDIDDAFL-RRLPKRFYIS 255
                 .66******************.7******997 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.4   1.9e-14     1e-11       2      41 ..     279     318 ..     278     322 .. 0.93

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 1.9e-14
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgikeitme 41 
                 +dl+++++rT+G+SG Dl++lcreAal A ++ ik+  m+
  CCD24707.1 279 FDLEAVVARTDGMSGSDLKELCREAALKAAKEYIKKKRMQ 318
                 7*********************************998887 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.4   2.1e-07   0.00011       1      82 [.     127     201 ..     127     248 .. 0.63

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.1e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGGG--HHHH CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEveraesevl 82 
                 +vlL GppG+gK++la++la   ++++  v ++  +       ++   ++  ++vd  +  a + e++i+++DE++ + +e +
  CCD24707.1 127 GVLLYGPPGCGKTMLAKSLALESGANFISVRMSTLM------DKYY--GESNKMVDALFSLANKiEPCIIFIDEIDSVLRERT 201
                 59*****************98888888888777633......3333..34447888888777668999999999996665544 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   7.1e-08   3.9e-05      34      96 ..     126     196 ..     119     208 .. 0.72
   2 ?   -2.9   0.0       9.4   5.1e+03     132     149 ..     227     244 ..     223     256 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 7.1e-08
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkit.sgPvlek....agdlaalltnleek...dvlfideihrl 96 
                   vllyGpPG Gkt lak +a e g+++ +   +  ++k    ++ ++  l +l +k    ++fidei  +
  CCD24707.1 126 SGVLLYGPPGCGKTMLAKSLALESGANFISVrMSTLMDKyygeSNKMVDALFSLANKiepCIIFIDEIDSV 196
                 569**********************99755414444544222245666666666554222699****9866 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 9.4
      RuvB_N 132 kftlvgattragllssPl 149
                 +  +vgat r   +   +
  CCD24707.1 227 RIMVVGATNRINDIDDAF 244
                 456788888776665544 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   5.7e-08   3.1e-05       5      76 ..     128     196 ..     125     247 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 5.7e-08
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT+l+k l+ e+     +++ + + +  dk + +++k+ +++++++++ +  ++f+DEi  v
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLALESG---ANFISVRMSTLMDKYYGESNKMVDALFSLANKIEPCIIFIDEIDSV 196
                 6899***************9998...9*********999999988889999999865558899******988 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     6e-08   3.3e-05       6      87 ..     128     204 ..     124     211 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 6e-08
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----.---- CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk.essg 87 
                 +ll gp g+Gkt+lak+la    +    ++i + +s+l+     e++++v+ l   ++    + e  i+++DEid + ++ +s  
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLALESGA----NFISVRMSTLMDkyYGESNKMVDALFSLAN----KIEPCIIFIDEIDSVLRErTSFD 204
                 6899***************99985....************666677777777776554....55788********9998655544 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   7.9e-06    0.0043       8      47 ..     128     158 ..     123     231 .. 0.86
   2 ?    2.0   0.0      0.42   2.3e+02      41      89 ..     250     315 ..     233     321 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 7.9e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtl 47 
                 ++++G++G+GKT+l++ l+ +          ++ +++v +
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLALES---------GANFISVRM 158
                 689***************9987.........555555555 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.42
      AAA_22  41 evvfvtlpsstsskdllrellralglelka.................erlsseellealeqalrar 89 
                 + +++ lp+ + ++ +l+ ll+ ++l+ +                  ++l +e+ l+a  ++++++
  CCD24707.1 250 KRFYISLPNAEQRSHILQVLLKGTELDDEFdleavvartdgmsgsdlKELCREAALKAAKEYIKKK 315
                 557899999999999999999999999888888888888777666666666666666666555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.3e-06    0.0018      23      46 ..     124     147 ..     119     166 .. 0.81
   2 ?    2.5   0.0       0.3   1.6e+02     126     147 ..     175     196 ..     167     231 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.3e-06
      AAA_16  23 rpelvllsGesGvGKsslvrellr 46 
                  p+ vll+G++G+GK+ l+++l+ 
  CCD24707.1 124 APSGVLLYGPPGCGKTMLAKSLAL 147
                 5789***************99983 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.3
      AAA_16 126 ll.allsrderplvlvlDdlqwa 147
                 +l +l+ +  +p ++++D+++ +
  CCD24707.1 175 ALfSLANK-IEPCIIFIDEIDSV 196
                 45366666.778********943 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.2e-06   0.00065       2      43 ..     128     171 ..     128     245 .. 0.80
   2 ?   -1.8   0.0         6   3.3e+03      40      81 ..     288     332 ..     275     340 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.2e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqq 43 
                 vll G+pG+GK+ la++l+ + g  ++ ++  tl+++++g+ ++
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLALESGanFISVRMSTLMDKYYGESNK 171
                 7899***************9999888889999999999986554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 6
      AAA_33  40 tdqqsktdytr.vldrlyqilnelarkal.sagrn.vildatnls 81 
                 td  s +d+++ +++ + +  +e+++k++ +a+ + +  dat+l+
  CCD24707.1 288 TDGMSGSDLKElCREAALKAAKEYIKKKRmQAKEGeTNPDATLLK 332
                 666667776665556677777777766653333333666777766 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.6e-06   0.00085      40      84 ..     118     162 ..     101     195 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.6e-06
   IstB_IS21  40 tlsfiekkenivllGpsGvGKshlaialgveavraglsvlfvrve 84 
                 ++s +++  +++l Gp+G GK+ la +l+ e  ++ +sv+  ++ 
  CCD24707.1 118 NGSLLQAPSGVLLYGPPGCGKTMLAKSLALESGANFISVRMSTLM 162
                 5678889999******************99988888887766554 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   4.8e-06    0.0026      25      42 ..     128     145 ..     124     149 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 4.8e-06
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   +ll+GppG+GKtmlak l
    CCD24707.1 128 VLLYGPPGCGKTMLAKSL 145
                   79**************98 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   6.9e-06    0.0038       1      65 [.     128     212 ..     128     237 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6.9e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrl..gf...................gvnlrdvakenglllevdpealdeskrldedkldklldale 65 
                 +ll G+pG+GKt lak L+ +   +f                   ++ l ++a + ++++ + +e +d+ +r+++ +++++  +l+
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLALESgaNFisvrmstlmdkyygesnkmVDALFSLANKIEPCIIFIDE-IDSVLRERTSFDHEVTANLK 212
                 799***************65532233777777777777777777788888888888887777777.44444444444444444443 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   9.9e-06    0.0054       1      24 [.     128     151 ..     128     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 9.9e-06
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallk 24 
                   ++lyGp+g+GK++lak+La +   
    CCD24707.1 128 VLLYGPPGCGKTMLAKSLALESGA 151
                   689**************7755443 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-05    0.0063      30      55 ..     122     147 ..     109     152 .. 0.86
   2 ?   -3.0   0.0       8.6   4.7e+03     130     163 ..     173     205 ..     157     213 .. 0.68

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.2e-05
      AAA_25  30 lpagelallaGapgtGKttlaldlal 55 
                 l a + +ll+G+pg+GKt+la +lal
  CCD24707.1 122 LQAPSGVLLYGPPGCGKTMLAKSLAL 147
                 55566689****************98 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.6
      AAA_25 130 vdaleaaieevegvrlvviDplsralggdensns 163
                 vdal   ++++e +  + iD ++++l+     ++
  CCD24707.1 173 VDALFSLANKIE-PCIIFIDEIDSVLRERTSFDH 205
                 566666677765.778888888888776554444 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.3e-05    0.0071       3      23 ..     128     148 ..     126     154 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.3e-05
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 v+l G++G+GKT+L+++lal+
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLALE 148
                 799***************986 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.3e-05    0.0071      19      81 ..     123     196 ..     119     202 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.3e-05
                      T-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H...........HHHHHHTTTSEEEEEE-TT- CS
  Sigma54_activ_2  19 qsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp...........ldlleqakggtLylkdiadl 81 
                      q+ + v+l G++G+gk++ A+ L+ +sg +   +++ +l++              +l +++++ ++++ +i++ 
       CCD24707.1 123 QAPSGVLLYGPPGCGKTMLAKSLALESGANFISVRMSTLMDKYygesnkmvdalFSLANKIEPCIIFIDEIDSV 196
                      77889************************99999999988644445556666668999999*********9986 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-05     0.011       5      30 ..     128     155 ..     125     217 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.1e-05
      AAA_24   5 iliyGpsgiGKTtlakel..gpkplfid 30 
                 +l+yGp+g GKT+lak+l  +  + fi 
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLalESGANFIS 155
                 79***************97744444443 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0052       2.8      35      55 ..     125     145 ..     111     153 .. 0.82
   2 ?    6.0   0.0     0.013       6.9     105     147 ..     170     212 ..     158     218 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0052
        TniB  35 mpnlllvGdsnnGKtmivekF 55 
                 ++ +ll+G++ +GKtm++++ 
  CCD24707.1 125 PSGVLLYGPPGCGKTMLAKSL 145
                 4679*************9875 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.013
        TniB 105 skleqqvlrllrelkvrvLiiDEihnllagsarkqreflnalk 147
                 +k+ ++  +l +++++ ++ iDEi+++l+ + +  +e+++ lk
  CCD24707.1 170 NKMVDALFSLANKIEPCIIFIDEIDSVLRERTSFDHEVTANLK 212
                 5677778889999****************99999999999888 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   5.7e-05     0.031      28      66 ..     120     157 ..     111     204 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 5.7e-05
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkldkekylslt 66 
                  ll++   vll+Gp G+GKt+++k+l  +    +++s+ 
  CCD24707.1 120 SLLQAPSGVLLYGPPGCGKTMLAKSLALESG-ANFISVR 157
                 57888899*****************655544.3444444 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00015     0.083      48      75 ..     128     155 ..     116     171 .. 0.84
   2 ?   -1.4   0.0       3.4   1.8e+03     137     160 ..     244     269 ..     222     299 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00015
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklre 75 
                 +L+ GP+GCgk+   k L+ e g +++ 
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLALESGANFIS 155
                 5789***************999988765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.4
       Rad17 137 lvedlPnkfyrds..dalrevirkyl 160
                 ++  lP +fy+++     r  i+++l
  CCD24707.1 244 FLRRLPKRFYISLpnAEQRSHILQVL 269
                 67778888888875323333444444 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   3.8e-05     0.021      37     180 ..     128     271 ..     119     310 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 3.8e-05
                 EEEE-SSSSSHHHHHHHHHHHHHHHSSSS-EEEEEHHHH..HHHHHHHHHT..T-HHHHHHHHTT-SEEEEE-GGGGTT.-HHHHHHHHHHHHHHHTTT CS
    Bac_DnaA  37 lfiygevGlGktHLlkaignevlenapelrvvYltaeeF..lnelvkalrd..kkaeefkeklrkvDvLliDDiqflag.kektqeelfhtfnalleeg 130
                 +++yg+ G Gkt L k+++ e  +n+ + r++ l  +++   n++v+al +  +k+e    ++ ++D +l +   f ++   + + e++++++ l+ + 
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLALESGANFISVRMSTLMDKYYgeSNKMVDALFSlaNKIEPCIIFIDEIDSVLRERTSFDHEvTANLKAEFMTLWDGLISSR 226
                 79********************************9999855589****987679999999999999999999999976615578999*********999 PP

                 -EEEEEESS-TTT-SS--HHHHHHHHSSEEEE-----HHHHHHHHHHHHH CS
    Bac_DnaA 131 kqvvlssDrsPkeleeledrlrsrfeaGlvvdieppdletrlailkkkie 180
                 + +v+ +    +++++++d +  r+   + + +  p+ e r  il+  ++
  CCD24707.1 227 RIMVVGAT---NRINDIDDAFLRRLPKRFYISL--PNAEQRSHILQVLLK 271
                 98888875...4577777777777766655544..566666666665555 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.051        27       2      30 ..     128     156 ..     127     163 .. 0.90
   2 ?    8.2   0.1     0.005       2.7      39      77 ..     286     324 ..     277     347 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.051
   Hydin_ADK   2 iivhGaPlsGKtatavtLakkYeaAllti 30 
                 +++ G+P  GKt  a +La + +a ++++
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLALESGANFISV 156
                 5789***************9999999887 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.005
   Hydin_ADK  39 sdgnssaGlrArelCaeaaieqaekekeeaaeeaekkeg 77 
                 + +   +G   +elC eaa++ a++  +++ ++a++ e+
  CCD24707.1 286 ARTDGMSGSDLKELCREAALKAAKEYIKKKRMQAKEGET 324
                 44556889999***********99998888888866433 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.3   7.2e+02     268     318 ..      40      91 ..      28      99 .. 0.74
   2 ?    6.6   0.0    0.0075         4      17      44 ..     122     149 ..     104     182 .. 0.76
   3 ?    5.2   0.2     0.019        10     161     190 ..     172     201 ..     155     203 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.3
  KAP_NTPase 268 eettesesrdetlgnsas.ksnlqlaldlskilltedfsdvnpRemkrlina 318
                 ++ +es +r+et ++ +  ks+   +l l+ + +++  s ++p e+   + +
  CCD24707.1  40 GRSKESRQRQETQWKRLCeKSPDFANLELNAYEQSILASVITPEEINITFED 91 
                 5667777777777766665666667899999999999999999999876665 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0075
  KAP_NTPase  17 latpivvgLygkWGsGKssllnkledel 44 
                 l+ p+ v Lyg+ G+GK+ l ++l  e 
  CCD24707.1 122 LQAPSGVLLYGPPGCGKTMLAKSLALES 149
                 588999**************99997665 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.019
  KAP_NTPase 161 ladmektLdalqkrlVvviDdLDrceteev 190
                 + d+  +L+++  + +++iD++D++  e++
  CCD24707.1 172 MVDALFSLANKIEPCIIFIDEIDSVLRERT 201
                 444444455567789**********99986 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00041      0.22      13      43 ..     100     149 ..      91     159 .. 0.66
   2 ?   -0.7   0.0       1.4   7.5e+02     103     134 ..     168     198 ..     152     220 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00041
      ATPase  13 k..................gGipe.grvvlitGepGtGKtifalqFlikg 43 
                 +                  g + +  + vl++G pG+GKt++a+  ++++
  CCD24707.1 100 SelnesviypltmpelytnGSLLQaPSGVLLYGPPGCGKTMLAKSLALES 149
                 33555555555555555544444314679**************9877765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.4
      ATPase 103 dleelieelaeaikeikakrvviDsitglaye 134
                 + +++++ l +  ++i+   + iD i+++  +
  CCD24707.1 168 ESNKMVDALFSLANKIEPCIIFIDEIDSV-LR 198
                 55677888888889999999999999888.33 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00015     0.079      20      62 ..     126     168 ..     100     180 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00015
                 EEEEEEESTTSSHHHHHHHHHHHTT------TTTTSEEEEEE. CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgveevkSPTFtlveeYele 62 
                 + +lL+G+ G+GKT+l+++la + g + ++    tl+ +Y  e
  CCD24707.1 126 SGVLLYGPPGCGKTMLAKSLALESGANFISVRMSTLMDKYYGE 168
                 349******************9999984444445577777554 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00013     0.073      54     116 ..     126     193 ..      70     235 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00013
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlkelpklvellr...erperfilfvDDL 116
                 + vLL+G  G+GK  l k+l  e  ++   +r+  +  +   e +k+v++l    ++ e +i+f+D +
  CCD24707.1 126 SGVLLYGPPGCGKTMLAKSLALESGANFisVRMSTLMDKYYGESNKMVDALFslaNKIEPCIIFIDEI 193
                 579*****************99998887778999999999999999998876121555668****976 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00055       0.3      23      41 ..     128     146 ..     122     165 .. 0.87
   2 ?   -0.2   0.0       1.4   7.6e+02     109     131 ..     175     197 ..     147     234 .. 0.64
   3 ?   -2.7   0.0       8.1   4.4e+03     176     176 ..     301     301 ..     256     321 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00055
    ATPase_2  23 yfiYGpegsGKtaLlkeii 41 
                 +++YGp g+GKt L k ++
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLA 146
                 689***********99876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.4
    ATPase_2 109 llekikkkgkkiiiiiDelqkli 131
                 +l ++ +k    ii+iDe+  + 
  CCD24707.1 175 ALFSLANKIEPCIIFIDEIDSVL 197
                 33334444445677777776554 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 8.1
    ATPase_2 176 n 176
                 +
  CCD24707.1 301 R 301
                 2 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   0.00017     0.091       2      27 ..     128     154 ..     127     183 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00017
      AAA_28   2 ivitGgestGKTtlleaLa.argypvv 27 
                 + + G++++GKT l++ La + g + +
  CCD24707.1 128 VLLYGPPGCGKTMLAKSLAlESGANFI 154
                 6799**************954465554 PP

>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.7     2e+03     312     371 ..     153     214 ..     151     225 .. 0.61
   2 ?   11.1   0.0   0.00024      0.13     247     332 ..     235     323 ..     216     340 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 3.7
  DNA_topoisoIV 312 flevrlevyerrkeyllekleerle.ilegllkalnkidevievirkskk.ekkakkeLiee 371
                    f++vr++++  +   + +k+ + l  + +++   +  ide+ +v+r++ + +++ +++L +e
     CCD24707.1 153 FISVRMSTLMDKYYGESNKMVDALFsLANKIEPCIIFIDEIDSVLRERTSfDHEVTANLKAE 214
                    66666666666666666655554441444555556667777777777766666666666655 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00024
  DNA_topoisoIV 247 k.isdirde.sdr.gvrivielkrgaseekvleklykktkLessisvnnlvlfdkkpkylslkeilkeflevrlevyerrkeyllekle 332
                    + i+di+d    r   r+ i+l + ++++++l+ l+k t+L +++ ++ +v+  ++    +lke+ +e +    + y ++k+++ ++ e
     CCD24707.1 235 NrINDIDDAfLRRlPKRFYISLPNAEQRSHILQVLLKGTELDDEFDLEAVVARTDGMSGSDLKELCREAALKAAKEYIKKKRMQAKEGE 323
                    3477****98777899***************************************************9998888888888888777655 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00043      0.23       1      30 [.     131     162 ..     131     205 .. 0.82
   2 ?   -2.2   0.1       9.8   5.3e+03      32      51 ..     298     317 ..     290     328 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00043
                 EE-TTSSHHHHHHHHHHHH..TEEEEEHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky..gfthlsaGdll 30 
                 +G+PG+GK+ +++ l+ +   +f  + ++ l+
  CCD24707.1 131 YGPPGCGKTMLAKSLALESgaNFISVRMSTLM 162
                 7**************98872244445556665 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 9.8
                 HHHHTTTSHSSHHHHCTSHH CS
      AAA_17  32 eeakrgglakardemrklpl 51 
                 e +++  l+ a+++++k  +
  CCD24707.1 298 ELCREAALKAAKEYIKKKRM 317
                 44444444444444444433 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00059      0.32      19      57 ..     122     157 ..     112     170 .. 0.78
   2 ?   -2.0   0.0       4.7   2.5e+03      92     105 ..     183     196 ..     165     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00059
                      CTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEE CS
  Sigma54_activat  19 aktdlsvlitGesGtGKellaraiheaskrkekpfvavn 57 
                       + ++ vl+ G  G+GK++la+++  +s    ++f++v 
       CCD24707.1 122 LQAPSGVLLYGPPGCGKTMLAKSLALESG---ANFISVR 157
                      567889****************9876554...5566655 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.7
                      TTTSEEEEETGGGS CS
  Sigma54_activat  92 adgGtlfLDeigel 105
                       +  ++f+Dei ++
       CCD24707.1 183 IEPCIIFIDEIDSV 196
                      455799****9875 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00034      0.18      14      49 ..     123     156 ..     116     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00034
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerqgnvvrl 49 
                 + P  +ll G pG+GK+ la+ l+ e   + n++ +
  CCD24707.1 123 QAPSGVLLYGPPGCGKTMLAKSLALES--GANFISV 156
                 578999*****************9998..6777765 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00035      0.19       5      71 ..     132     193 ..     128     198 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00035
  Viral_helicase1   5 GvpGcGKStlirkllrts.liltvnrptaelltegk..pklpnlsvrtvdsflmalvkstkgkililDEy 71 
                      G pGcGK+ l ++l+ +s  +       ++ ++++   +k   +s+++vd++ + + k  +  i+++DE+
       CCD24707.1 132 GPPGCGKTMLAKSLALESgAN-------FISVRMSTlmDKYYGESNKMVDALFSLANK-IEPCIIFIDEI 193
                      78*************994433.......444444444555556667777776666655.45668888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       578  (0.0322383); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              33  [number of targets reported over threshold]
# CPU time: 0.59u 0.32s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 2368.61
//
Query:       CCD24708.1  [L=197]
Description: hypothetical protein NDAI_0D03940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-28   99.2   4.5    2.3e-28   98.6   4.5    1.3  1  Evr1_Alr  Erv1 / Alr family
  ------ inclusion threshold ------
      0.093   12.9   0.3       0.17   12.1   0.1    1.6  2  SNAD4     Secreted Novel AID/APOBEC-like Deaminase 4


Domain annotation for each model (and alignments):
>> Evr1_Alr  Erv1 / Alr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   4.5   2.6e-32   2.3e-28       2     100 .]     102     193 ..     101     193 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.6 bits;  conditional E-value: 2.6e-32
                 HHHHHHHHHHHCSHSS..HHHHHHH-CHHHHHHHHHHHSSCHHHHHHHHHHHHHCH.CCCGSSHHHHHHHHHHHHHHHHHHTT...T-HHCHHHCCCCC CS
    Evr1_Alr   2 slWtllHtlaaevpekpteeqqkelavlkaflkliakfypCeeCaehfekvlaenppekevesrdelvlWlweaHNeVnkrlakeefdcsedkvkerwp 100
                 s+Wt+lH+++a++p +p+++q+ e+   ++fl l++++ypC++Ca++fek +++n+p+  vesr+el +W++eaHN+Vn +l+k++f+c+   +++rw+
  CCD24708.1 102 SSWTFLHAMTAKYPGNPSDTQKMEM---ERFLTLFSHVYPCNWCAKDFEKFIQDNSPK--VESREELGRWMCEAHNHVNGKLNKPKFNCD--FWEKRWK 193
                 68************99*********...****************************88..******************************..77***96 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.1     1e+04      58      70 ..      42      54 ..      41      55 .. 0.80
   2 ?   12.1   0.1   1.8e-05      0.17      41      68 ..     127     154 ..     101     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.1
       SNAD4 58 ekiaeflaehpnv 70
                e++ +f+++h++v
  CCD24708.1 42 ESVKTFMQDHEKV 54
                5788999999987 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.8e-05
       SNAD4  41 eyrvtwylswsPCaeCaekiaeflaehp 68 
                 e  +t++ ++ PC  Ca++  +f+++++
  CCD24708.1 127 ERFLTLFSHVYPCNWCAKDFEKFIQDNS 154
                 4568********************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1504.92
//
Query:       CCD24709.1  [L=160]
Description: hypothetical protein NDAI_0D03950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-06   28.1   0.0    2.2e-06   27.4   0.0    1.4  1  Alba      Alba


Domain annotation for each model (and alignments):
>> Alba  Alba
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.2e-10   2.2e-06       2      65 ..      49     114 ..      48     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.2e-10
                 EEEE-STS-HHHHHHHHHHHHTHTTESEEEEEEETTHHHHHHHHHHHHHHHTCT.....T.EEEEEEEE CS
        Alba   2 eiyVsskspimsyvkralklLsnkkeeeVvlkatGraIskAvsvaeilkrrfgk.....glyqvnvlts 65 
                   ++s++++i++ v+++++     + e V+  a+G + +k++s+ ei k+ ++k     ++ q+n lt 
  CCD24709.1  49 YFKISKNDNIKQKVEKLQTVT---SGECVCAYAYGPHLQKMLSILEICKNVVKKndlegSISQWNHLTC 114
                 679******************...6799**********************9988888888999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1203.23
//
Query:       CCD24710.1  [L=312]
Description: hypothetical protein NDAI_0D03960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-23   82.9   0.2    2.3e-23   82.2   0.2    1.3  1  Ribosomal_L10  Ribosomal protein L10
    1.8e-21   75.9   0.0      3e-21   75.2   0.0    1.4  1  RL10P_insert   Insertion domain in 60S ribosomal protein L10P
    5.6e-18   65.3   2.3    5.6e-18   65.3   2.3    2.1  2  Ribosomal_60s  60s Acidic ribosomal protein
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.51   10.2   0.0    1.9  2  Alg14          Oligosaccharide biosynthesis protein Alg14 lik


Domain annotation for each model (and alignments):
>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.2   5.2e-27   2.3e-23       3      98 ..       5     103 ..       4     105 .. 0.94

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 5.2e-27
                    CCCHCCCCCCCCCCCTTSSEEEEEE-TTS-HHHHHHCCCHHHHHGCEEEEESCCCCCCCCHCCTSS.S....SCGCCSSSEEEEEESS-TCHHHHC CS
  Ribosomal_L10   3 kekKeelvkelkellkkyksvvvvdyegltvaqlqelRkklrengaelkvvKntlmrrAleetgeeek....lkellkgpvalvftnedpvalakv 94 
                    +ekK e++++l+  l++yks+++v +++++++q++e+Rk+lr+  + + ++Knt++r A+++   e++    l +++kg+v++vftn + +++++v
     CCD24710.1   5 REKKVEYFAKLRSYLEEYKSIFIVGVDNVSSQQMHEVRKELRGR-GVVLMGKNTMVRTAIRGLIGESSdfekLLPFIKGNVGFVFTNASLQDIKEV 99 
                    89*****************************************9.*****************999853477799********************** PP

                    CCCC CS
  Ribosomal_L10  95 leef 98 
                    + ++
     CCD24710.1 100 IISN 103
                    9877 PP

>> RL10P_insert  Insertion domain in 60S ribosomal protein L10P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   6.7e-25     3e-21       1      71 []     109     178 ..     109     178 .. 0.99

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 6.7e-25
  RL10P_insert   1 AraGtiAtedviipagplelaPgsiepeLrklglptklkkGkivleedylvckkGetltseqaqlLklLgi 71 
                   AraG+iA+ed++++a +++++Pg++ +++++lg+ptk+ +G+i++ +d++v+ +G+++++++a+lL+lL+i
    CCD24710.1 109 ARAGAIAPEDIWVRAVNTGMEPGKT-SFFQALGVPTKIARGTIEIVSDVKVVDAGQKVGQSEASLLNLLEI 178
                   9************************.*******************************************98 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.24   1.1e+03      33      52 ..      94     113 ..      82     118 .. 0.57
   2 !   65.3   2.3   1.2e-21   5.6e-18       1      88 []     229     311 ..     229     311 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.24
                    XXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  33 kdieellangaaklaaaaaa 52 
                    +di+e++   + ++ a+a+a
     CCD24710.1  94 QDIKEVIISNKVAAPARAGA 113
                    67888877775442222222 PP

  == domain 2  score: 65.3 bits;  conditional E-value: 1.2e-21
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS--STTT CS
  Ribosomal_60s   1 eptaenikkvlkaagveveaarvkllvkalegkdieellangaaklaaaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedddmGfgLF 88 
                    +pt  ++ + l + +++++a+++   +++ e +++ + ++n+ ++   a aa+aaaaa ++ aa+aee+++e ee  +ed+dmGfgLF
     CCD24710.1 229 YPTLPSVGHTLINNYKDLLAVAIGSGYHFAEIEELVDRIENPDKY---ASAAPAAAAASSGDAAPAEEAAAEDEE--SEDEDMGFGLF 311
                    5999***************************************99...558888888888888888888888886..89********* PP

>> Alg14  Oligosaccharide biosynthesis protein Alg14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.31   1.4e+03      26      54 ..      20      48 ..       8      62 .. 0.73
   2 ?   10.2   0.0   0.00011      0.51       2      52 ..     248     302 ..     247     310 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.31
       Alg14 26 nikrtyvvssgDelSaekakelesskaee 54
                  ++ +++   D+ S ++++e++++  ++
  CCD24710.1 20 EEYKSIFIVGVDNVSSQQMHEVRKELRGR 48
                45556666678999999999999887665 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00011
       Alg14   2 lvvlGSGGHTaEmlrllkkl....ekeknikrtyvvssgDelSaekakelesska 52 
                  v +GSG H aE+ +l++++    ++ + ++    +ssgD + ae+a+  +++++
  CCD24710.1 248 AVAIGSGYHFAEIEELVDRIenpdKYASAAPAAAAASSGDAAPAEEAAAEDEESE 302
                 6889****************98877788889999999999999988875544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2273.15
//
Query:       CCD24711.1  [L=363]
Description: hypothetical protein NDAI_0D03970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-17   62.9   0.0      1e-16   61.3   0.0    1.7  1  Abhydrolase_1  alpha/beta hydrolase fold
    1.4e-11   45.4   0.0    3.9e-11   44.0   0.0    1.7  1  Abhydrolase_6  Alpha/beta hydrolase family
    9.7e-11   41.4   0.0    1.3e-10   41.0   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
     0.0053   16.5   2.4       0.29   10.8   2.4    2.9  1  PGAP1          PGAP1-like protein
  ------ inclusion threshold ------
      0.037   13.6   0.2       0.29   10.7   0.1    2.1  2  LIDHydrolase   Lipid-droplet associated hydrolase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   2.9e-20     1e-16       2     257 .]     102     346 ..     101     346 .. 0.88

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 2.9e-20
                    EEEEE-STTTCGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH.HH.HHHCTTSSEEEEEETHHHHHHHHHHHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd.gfdvillDlrGvgySspapacinddygtasvaddld.ri.ldalgddkltlvGhSmGGmialayaaey 94 
                    +++ilhG+ g+  + +   l+++L+++   d++llDlr++g+S+   +   +dy+   +a d++ +i +  ++d k++++GhSmG  +++   ++ 
     CCD24711.1 102 PFIILHGFFGNKTNNRT--LGRGLNEQlNRDIYLLDLRNHGRSPHMER---HDYTS--MAHDVElFIeKHMTPDIKPIIIGHSMGAKVGMSIVLRK 190
                    79************999..************************66666...****9..******99999999999********************* PP

                    GGGEEEEEEESE.......CSSCCHHHHHHHHHHHHHH.CHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHHHHHHHCHHHH CS
  Abhydrolase_1  95 perVkalvllga.......idpaaslieaqrqqaksfp.dffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfpssgsdnassla 182
                    p+  ++lv ++         d+++ +i+  +++ +++  +++d + ++ ++  +  ++   l + ++r ++       ++s  +  s+++  + ++
     CCD24711.1 191 PSISSMLVNIENapvskvpEDTFPRYIRQLLRICNNPDiKTMDDVDEKLKEVEQTASVRQFLMTNLTRKKN------LETSEYAIKSRIPLDILND 280
                    ************88877766666666666666666654478888888888888888888888877777776......8999999999********* PP

                    HHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHSH CS
  Abhydrolase_1 183 tgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlaflegp 257
                     + +++i++w+ +++++   ++ +      ptl+i gt+ +++++++l  +   +p+ +++ +++agH+++ e+p
     CCD24711.1 281 SVIKGNISGWEFDPNFH---QWKG------PTLFIRGTESNYITDEYLPTIGLFFPRFEVRDVQGAGHWVNSENP 346
                    ***********999977...5566......*********************999***8889999******98875 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   1.1e-14   3.9e-11       2     219 ..     104     351 ..     103     352 .. 0.55

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 1.1e-14
                    EEE--GC.....G........CHHHHHHHHCCTCEEEEE--TTSTS-GGCS.--HHH.CHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC. CS
  Abhydrolase_6   2 lllHGagssassW........lvapLaallaagvhvlapDlpGhGrsdppp.ldled.ladlaalldelaagggpvvlvGHSlGGalalaaaplal 87 
                    + lHG+      +        l + L + l++++  + +Dl++hGrs+ +  +d++  ++d++ ++++  + + +++++GHS+G+ +++  +    
     CCD24711.1 104 IILHGF------FgnktnnrtLGRGLNEQLNRDI--YLLDLRNHGRSPHMErHDYTSmAHDVELFIEKHMTPDIKPIIIGHSMGAKVGMSIV---- 187
                    789994......2433222211346688889999..*********6644445999887788899999998666666********98777722.... PP

                    .EEEEES-...........----TTTS----TTHHHHHHTT-C..CCCHCCH.........S-HSCCCCHHH..C...CCCHCHCCCGHH...... CS
  Abhydrolase_6  88 vvgvlldp........pp.talpagllaaalelllallallrl..lawlsre.........plprlfladed..a...daawrarlarla...... 152
                    +++  +++        p+  ++ +++++ +++ll+  + + ++  +  +  e         ++++ ++ +++  +                     
     CCD24711.1 188 LRKPSISSmlvnienaPVsKVPEDTFPRYIRQLLRICNNPDIKtmDDVD--EklkeveqtaSVRQFLMTNLTrkKnleTS---------Eyaiksr 272
                    2224444411111222222333333344444444433333333222222..01223344444443333322223022222.........1222222 PP

                    .....HHCC.........HHCHTTCCHHTT-TTGCEEE.C.TT-CHHHHCHHCCCH.STTEEETCE...SSS-HHHHSHHHHHH CS
  Abhydrolase_6 153 .....alla.........glgllpaaawadlpvpllvl.g.geDplvprllerlla.qagarlpvvlpgaGHlphleepdevae 219
                            +         g+++ p  ++ +   p+l + g +++ +  ++l  ++   +++++   + gaGH+++ e+p +++e
     CCD24711.1 273 ipldiL--NdsvikgnisGWEFDP--NFHQWKGPTLFIrGtESNYITDEYLPTIGLfFPRFEV-RDVQGAGHWVNSENPNKCVE 351
                    223330..2333333333555556..88888888888776244446667777888888*****.************99988876 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   3.6e-14   1.3e-10       4     140 ..     100     244 ..      97     317 .. 0.73

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 3.6e-14
  Hydrolase_4   4 kavvvlvHGlaehsgryaelaeaLaaq.GfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyllrypdk 100
                  ka  +++HG+         l++ L++q + ++y lD r hGrs   +++ ++++++  D++ f+ek+    p+ + +++GhSmG+ + ++++lr+p+ 
   CCD24711.1 100 KAPFIILHGFFGNKTNNRTLGRGLNEQlNRDIYLLDLRNHGRS--PHMERHDYTSMAHDVELFIEKHM--TPDIKPIIIGHSMGAKVGMSIVLRKPS- 192
                  677899******************98779**************..677789*************9999..677788*********************. PP

  Hydrolase_4 101 va.gl..ilsaPalkikaklkappllklllkllgkllpklqv............s 140
                  ++  l  i  aP+ k+++++ +p++ + ll++ ++  p+++             +
   CCD24711.1 193 ISsMLvnIENAPVSKVPEDT-FPRYIRQLLRICNN--PDIKTmddvdeklkeveQ 244
                  44244114569999999886.88888888888776..444444445555555554 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   2.4   8.1e-05      0.29      84     122 ..     162     200 ..      23     250 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.1e-05
       PGAP1  84 sssekeptsviliGHSmGGivaraaltlknyikqsvnti 122
                 +++ ++  + i+iGHSmG +v  +++  k  i ++  +i
  CCD24711.1 162 EKHMTPDIKPIIIGHSMGAKVGMSIVLRKPSISSMLVNI 200
                 555566666799**********99998887777655444 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   8.1e-05      0.29      68     107 ..     157     191 ..     116     203 .. 0.76
   2 ?    0.4   0.0      0.11   3.9e+02     155     197 ..     211     252 ..     196     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.1e-05
  LIDHydrolase  68 kedflkellekaksekdvklilvGHSvGaYialevlkrls 107
                   +e f++++++      d+k i++GHS Ga + + ++ r +
    CCD24711.1 157 VELFIEKHMT-----PDIKPIIIGHSMGAKVGMSIVLRKP 191
                   3457777776.....99*************9999998755 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
  LIDHydrolase 155 kllPesvkslliklvlgkssspkeavettlkfvkspevvrqal 197
                   +++P+++++ll  +  ++ ++++  v+++lk v+++ +vrq l
    CCD24711.1 211 DTFPRYIRQLLRICNNPDIKTMD-DVDEKLKEVEQTASVRQFL 252
                   67899999999988888888865.89999****9**9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       486  (0.0271069); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2688.94
//
Query:       CCD24712.1  [L=1840]
Description: hypothetical protein NDAI_0D03980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
          0 1261.5   0.0          0 1260.7   0.0    1.4  1  Glucan_synthase  1,3-beta-glucan synthase component
    6.5e-42  142.9   1.0    6.5e-42  142.9   1.0    2.2  2  FKS1_dom1        1,3-beta-glucan synthase subunit FKS1, domai


Domain annotation for each model (and alignments):
>> Glucan_synthase  1,3-beta-glucan synthase component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1260.7   0.0         0         0       1     816 [.     774    1595 ..     774    1598 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1260.7 bits;  conditional E-value: 0
  Glucan_synthase    1 ffpknseaerRisfFaqslstplpealkvekmptFtvLiPhysEkillslkeiikeeekksrvtlleYLkqlypkeWknFvkdtkllaeeke 92  
                       ffpk+seaerRis Faqsl++p+ ++l+v++mptFtvL+PhysE+illsl+eii+e+++ srvtlleYLkql+p eW++Fvkdtk+laee++
       CCD24712.1  774 FFPKDSEAERRISSFAQSLAVPIDRPLPVDNMPTFTVLTPHYSERILLSLREIIREDDQFSRVTLLEYLKQLHPLEWDCFVKDTKILAEETA 865 
                       79****************************************************************************************99 PP

  Glucan_synthase   93 eeke.eeekkeeellkekiedlpfyliGfkssepeytlrtriWaslrsqtLyrtvsGfmnYskalkllyrvenaslvellseesekleeele 183 
                         +  eee  +ee  k++i+dlpfy+iGfks++peytlrtriWaslrsqtLyrtvsGfmnYs+a+kllyrven+++v++++ ++e le+ele
       CCD24712.1  866 VYEGqEEEMMKEEGEKSEIDDLPFYCIGFKSAAPEYTLRTRIWASLRSQTLYRTVSGFMNYSRAIKLLYRVENPDIVQAFGGNAEGLERELE 957 
                       87650555677888999*************************************************************************** PP

  Glucan_synthase  184 elaerKfklvvamqryakfkkeekenaelllkaypelkiayldeeaee.eeeekeyysvLidgsseideengkrkekyrirLsGnpilGdGK 274 
                       ++++rKfk++v+mqr+akfk +e enae+ll+ayp+l+iayldee++  e +e+++ys+Lidg++ei  eng+r++k+r++LsGnpilGdGK
       CCD24712.1  958 KMTRRKFKFLVSMQRLAKFKPHELENAEFLLRAYPDLQIAYLDEEPPLhEGDEPRIYSALIDGHCEIL-ENGRRRPKFRVQLSGNPILGDGK 1048
                       ********************************************8765599****************9.*********************** PP

  Glucan_synthase  275 sdnqnhaiiftRGeyiqviDanqdnyleEclKirsvLaefeeleleskkpyaeeiekeee..kepvailGaREyiFsenigvLgdiaagkEq 364 
                       sdnqnha+if+RGeyiq+iDanqdnyleEclKirsvLaefeel++e+  py++++++ee+  ++pvai+GaREyiFsen gvLgd+aagkEq
       CCD24712.1 1049 SDNQNHALIFYRGEYIQLIDANQDNYLEECLKIRSVLAEFEELDAEQIDPYIPGMKYEEQvtNHPVAIVGAREYIFSENSGVLGDVAAGKEQ 1140
                       *****************************************************99876652279**************************** PP

  Glucan_synthase  365 tFgtlfaRtlaeiggklHYGHPDflnaifmttRGGvsKaqkglhlnEDiyaGmnallRgGrikHseYiqcGKGRDlGfgsilnFttKigaGm 456 
                       tFgtlfaRtl++iggklHYGHPDf+na fmttRGGvsKaqkglhlnEDiyaGmna+lRgGrikH+eY+qcGKGRDlGfg+ilnFttKigaGm
       CCD24712.1 1141 TFGTLFARTLSQIGGKLHYGHPDFINATFMTTRGGVSKAQKGLHLNEDIYAGMNAMLRGGRIKHCEYYQCGKGRDLGFGTILNFTTKIGAGM 1232
                       ******************************************************************************************** PP

  Glucan_synthase  457 gEqlLsReyyylgtqlpldRfLsfyyahvGfhlnnllivlsvqlflllllnlgalekesiiceydkskkitdlekplgCynlkpvlewvkiv 548 
                       gEq+LsReyyylgtqlp+dRfLsfyyah+Gfhlnnl+i ls+q+f+l+l+n+ al++e+iic yd++++itd+  p+gCyn++pv +wv+++
       CCD24712.1 1233 GEQMLSREYYYLGTQLPIDRFLSFYYAHPGFHLNNLFIQLSLQMFMLTLVNMHALAHEAIICLYDRNRPITDVLYPIGCYNFSPVNDWVRRY 1324
                       ******************************************************************************************** PP

  Glucan_synthase  549 vlsifivffisflPllvqellergvlkavsrllkhllslsplfevfvcqiyaksllkdllfGgAkYiatGRgfavtrisfaelysrfasssi 640 
                        lsifivffi+f+P++vqel+erg++ka+ r+++hllslsp+fevf+ qiy+++ll+dl++GgA+YiatGRgfa++ri+f++lysrfa s+i
       CCD24712.1 1325 TLSIFIVFFIAFIPIIVQELIERGLWKATLRFFRHLLSLSPMFEVFAGQIYSSALLSDLTVGGARYIATGRGFATSRIPFSILYSRFAGSAI 1416
                       ******************************************************************************************** PP

  Glucan_synthase  641 ykgiellllllfatvtvwqaallyfwitvvslilaPflfn.PhqfslldffvDyrdflrWlsrgnskskeesWisyvrqsrlritglkkkvl 731 
                       y+g++ +++llf      +  +  +    v       lf    +f+ + ff+Dyrdf+rWlsrgn k++++sWi yvr+sr+ritg+k+k+l
       CCD24712.1 1417 YMGARSMIMLLFGYSCQLECCIALVLGFFVQHYYFHHLFSiLINFHGKIFFLDYRDFVRWLSRGNGKYHRNSWIGYVRMSRSRITGFKRKLL 1508
                       **********998776665544443333333333344444145799999******************************************* PP

  Glucan_synthase  732 geesekeskdvkrasllnlllseiilellvvlllliaylfinsqtgv..keaeatnsvlrlaivsllpillnvvvllvlfalslllg 816 
                       g+esek++ d++ra+ +nl+l e+i  +++++ ++ia++fin+qtgv  ++ +++nsvlrl+i++l+pi ln++vll+++ +s++ +
       CCD24712.1 1509 GDESEKAAGDASRAHRINLILGELIPCAVYAAGCFIAFTFINAQTGVstTDDDRVNSVLRLIICTLCPIGLNMAVLLFCVSISCCSN 1595
                       **********************************************955567899*****************************976 PP

>> FKS1_dom1  1,3-beta-glucan synthase subunit FKS1, domain-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.9   1.0   7.2e-46   6.5e-42       1     128 [.     266     374 ..     266     375 .. 0.97
   2 ?   -3.0   0.0      0.99   8.9e+03     110     119 ..    1668    1677 ..    1649    1680 .. 0.77

  Alignments for each domain:
  == domain 1  score: 142.9 bits;  conditional E-value: 7.2e-46
   FKS1_dom1   1 ekvlqiaLylliWGEaanvRflpeclcyifkcaadyleseeakeeeeelkeleeileekvseaaaseeeesfLkkvitPlyevlrkqeaeknkegkyvr 99 
                 ++v+q+aLyll+WGEa++vRf++eclc+i+kca dyl+s e++++ + +                  +e ++L+++itPly+++r+q++e+ +eg+y++
  CCD24712.1 266 QRVRQLALYLLCWGEANQVRFTAECLCFIYKCASDYLDSPECQNRIDPI------------------PEGDYLDRIITPLYQYIRNQVYEI-SEGRYIK 345
                 579****************************************999999..................9***********************.8999*** PP

   FKS1_dom1 100 rekdHskiigYDDlNelFWskegieklkl 128
                 re+dH++i+gYDD+N+lFW++egi+k++l
  CCD24712.1 346 RERDHHQIVGYDDVNQLFWYPEGIAKIVL 374
                 **************************987 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.99
   FKS1_dom1  110 YDDlNelFWs 119 
                   D +N  FWs
  CCD24712.1 1668 NDHVNTAFWS 1677
                  4888999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1840 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       764  (0.0426125); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.45
# Mc/sec: 12414.62
//
Query:       CCD24713.1  [L=248]
Description: hypothetical protein NDAI_0D03990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-56  189.9   0.0    2.8e-56  189.4   0.0    1.2  1  TIM21     TIM21


Domain annotation for each model (and alignments):
>> TIM21  TIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.4   0.0   1.6e-60   2.8e-56       1     145 []      76     228 ..      76     228 .. 0.99

  Alignments for each domain:
  == domain 1  score: 189.4 bits;  conditional E-value: 1.6e-60
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTHHHHHHHHHHHHHHH-HHHHHHT........----EEEC-ECCSSSSCCC--SEEEEEE-TT CS
       TIM21   1 kvkeatkntlsliivlagvgvtglvlYlilselfspsgdtkifnrAlekveedeevrevl........gerlkayGeetrrdrWtRnrpivstreldke 91 
                 k+k  t++tls +++l+g+g++++vlYli+selfspsgdt++fnrA+++ve+d+ vr++l        +erlkayGe +++drWtRnrpivst++ld++
  CCD24713.1  76 KLKTLTSFTLSGSLILGGIGISAIVLYLIISELFSPSGDTQLFNRAVTMVEKDPTVRDMLqckdsalrKERLKAYGELITHDRWTRNRPIVSTKKLDRS 174
                 788999********************************************************************************************* PP

                 SSEEEEEEEEEE-SS-EEEEEEEEEE-SS-SS-EEEEEEEEETTCEEEEEE--S CS
       TIM21  92 GkehlrmkFhvegkrkkgtvklelkesdesgklefrylyvdvpgekriylednk 145
                 G++h++m+Fhve+k+k+++v++e+k+s+++++++f ++yvd+pgekr+yl+++k
  CCD24713.1 175 GITHHFMRFHVESKKKRALVHIEAKDSQTNYQPDFTTVYVDIPGEKRFYLIRPK 228
                 ***************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1082  (0.0603492); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1904.63
//
Query:       CCD24714.1  [L=127]
Description: hypothetical protein NDAI_0D04000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-37  127.7   1.5    2.1e-37  127.4   1.5    1.1  1  Ribosomal_L26  Ribosomal proteins L26 eukaryotic, L24P archae
    0.00049   20.0   1.6    0.00058   19.7   0.5    1.7  2  KOW            KOW motif


Domain annotation for each model (and alignments):
>> Ribosomal_L26  Ribosomal proteins L26 eukaryotic, L24P archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.4   1.5   2.4e-41   2.1e-37       1      82 []       9     122 ..       9     122 .. 0.99

  Alignments for each domain:
  == domain 1  score: 127.4 bits;  conditional E-value: 2.4e-41
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................xxxxxxxxxxxxxxxxxxxxx RF
  Ribosomal_L26   1 sssrrkqrKahfnapshirrklmsapLskeLrekygvrslpir................................gvtrekangttvpvgihpSkv 64 
                    ss+rrk+rKa+f+aps++rr l+sapLskeLr++yg+++lpir                                +vt+ek+ng++vp++ihpSkv
     CCD24714.1   9 SSDRRKARKAYFTAPSSVRRVLLSAPLSKELRAQYGIKALPIRrddevlvargakkgqegkvssvyrlkfaiqvdKVTKEKSNGASVPINIHPSKV 104
                    89********************************************************************************************** PP

                    xxxxxxxxxxxxxxxxxx RF
  Ribosomal_L26  65 vItklklDkdrkkiLerk 82 
                    vItkl+lDkdrk++++rk
     CCD24714.1 105 VITKLHLDKDRKALIQRK 122
                    *****************8 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.5   6.4e-08   0.00058       2      32 .]      53      83 ..      52      88 .. 0.87
   2 ?   -2.2   0.0      0.52   4.7e+03      18      19 ..     105     106 ..      97     119 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 6.4e-08
                TSEEEESSSTTTTCEEEEEEEETTTTEEEEE CS
         KOW  2 GdhVkVvsGphkGktGkVvkvdqhkvrVfvd 32
                +d+V V +G  kG++GkV +v++ k  + vd
  CCD24714.1 53 DDEVLVARGAKKGQEGKVSSVYRLKFAIQVD 83
                89*********************99555554 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.52
                 EE CS
         KOW  18 kV 19 
                 ++
  CCD24714.1 105 VI 106
                 33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1010.68
//
Query:       CCD24715.1  [L=477]
Description: hypothetical protein NDAI_0D04010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-54  184.7   4.1    2.1e-54  184.2   4.1    1.2  1  6PF2K            6-phosphofructo-2-kinase
    4.2e-13   49.4   0.0    7.8e-13   48.6   0.0    1.4  1  His_Phos_1       Histidine phosphatase superfamily (branch 1)
    0.00029   21.0   0.0    0.00062   19.9   0.0    1.5  1  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.078   12.9   0.4       0.21   11.5   0.0    1.8  2  Colicin          Colicin pore forming domain
       0.12   13.1   0.0        7.9    7.1   0.0    2.4  2  Glycohydro_20b2  beta-acetyl hexosaminidase like


Domain annotation for each model (and alignments):
>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.2   4.1   5.9e-58   2.1e-54       4     220 ..      67     282 ..      64     285 .. 0.96

  Alignments for each domain:
  == domain 1  score: 184.2 bits;  conditional E-value: 5.9e-58
                 XHHHHT..S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS---GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHTS--SEEEE CS
       6PF2K   4 stvtnlknsklvivlvGLpargKtyiskkltrylkwlgvrtkvFnvgkyrreaskalsdaeffrpdneealklreklalaalkdllaylneeegqvaif 102
                 ++++ +++ k++ivlvGLpa++Kt++++ l ry kwlgv ++vFn+++yrr+++  ++++ f   ++++a+++r+++++  ++d++++++ee+gq+aif
  CCD24715.1  67 ESGKLFHAGKIMIVLVGLPATSKTLLAHSLERYCKWLGVVSRVFNLADYRRKFKDVPKEYFFGGETSTKAIEVRKQIRKVSINDMKKFFQEENGQLAIF 165
                 56788999******************************************************************************************* PP

                 ES---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEET.TTTEEE CS
       6PF2K 103 DAtNttrerRklilefveennlkvlflesicsdeeiikeNikevklsspDYkdketeeaikdflkRlenyekqyeplddeedeelsyIkvid.vgkslv 200
                 DA Nt++ +R++i e ++  n++vlf+esi +d+++ ++Nik+v ++ +  +d+ +++     l+++ + + +ye ++  + e+lsy+k  +  ++ +v
  CCD24715.1 166 DAMNTQKMERRCIQENFQCLNVNVLFVESIMTDKDLTERNIKLVMETIKEGNDEFDKKIRYSLLNKMLTSKPSYEEIE--DSEKLSYVKFNNfGKQIVV 262
                 ***********************************************99999999999999*****************..8899********6666677 PP

                 EE---SHHHHHHHHHHTT-- CS
       6PF2K 201 vnnvqgylqsrivyyllNih 220
                 +nn qgyl ++ v++l+N++
  CCD24715.1 263 KNNHQGYLLNKLVFFLMNLR 282
                 7899**************98 PP

>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   2.2e-16   7.8e-13      66     183 ..     354     469 ..     349     477 .] 0.90

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 2.2e-16
                 CTT--EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GG CS
  His_Phos_1  66 alglpveldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarhegetvlvVsHggvirallarllglple 164
                   +++++ + +Lr +++G+ egl+ +ei+++yp+e+++ ++d +++r+p+ Es++d+a R++  l el++++++  +l+++   v+r+l+ +++  +  
  CCD24715.1 354 DSDIELINKSQLRRMNLGAIEGLSEEEIEKQYPKEYKESFEDLYHYRYPRAESYHDLAIRLEGLLLELEHQQSD--LLIFADESVLRILYGYFMSSSCI 450
                 5678999999**********************************************************999986..9****************999988 PP

                 GGGGB---TT-EEEEEE-S CS
  His_Phos_1 165 elrrleldnaslsvlefde 183
                 e++ l++   ++++l+++ 
  CCD24715.1 451 EVPLLNFGKGEIVELSLKT 469
                 8888888888888887765 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.7e-07   0.00062       1     116 [.      78     206 ..      78     215 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.7e-07
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.....avllssdtlrrrlfg......tdqqsktdytrvldr....lyqilnelarkalsagrnvildatnlsrre 84 
                 +++lvGlp++ K+ la++l +  +       + +  ++rr+ +        + ++ t+ ++v+++     ++ +++++++  + g+ +i+da n+++ e
  CCD24715.1  78 MIVLVGLPATSKTLLAHSLERYCKwlgvvSRVFNLADYRRKFKDvpkeyfFGGETSTKAIEVRKQirkvSINDMKKFFQE--ENGQLAIFDAMNTQKME 174
                 689*************9997777744253223344446666665777777455555666666666111155555566653..66666************ PP

      AAA_33  85 rarflklarrlgvpvrivvvetdeetlkeRla 116
                 r+ + + ++ l+v+v+ v     ++ l eR+ 
  CCD24715.1 175 RRCIQENFQCLNVNVLFVESIMTDKDLTERNI 206
                 ****************9999999888888886 PP

>> Colicin  Colicin pore forming domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.8e-05      0.21      83     116 ..      87     120 ..      63     125 .. 0.88
   2 ?   -2.4   0.3       1.1   3.8e+03      74     113 ..     162     203 ..     135     218 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.8e-05
     Colicin  83 vdkkilaenleklskglGvvgkaidaekLleefk 116
                   k +la++le++ k lGvv+++ + ++ +++fk
  CCD24715.1  87 TSKTLLAHSLERYCKWLGVVSRVFNLADYRRKFK 120
                 56789***************************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
     Colicin  74 vaiakal..esvdkkilaenleklskglGvvgkaidaekLle 113
                  ai +a+  ++++++ + en++ l   + +v+ ++  ++L e
  CCD24715.1 162 LAIFDAMntQKMERRCIQENFQCLNVNVLFVESIMTDKDLTE 203
                 344444411457777788888877777777777766666655 PP

>> Glycohydro_20b2  beta-acetyl hexosaminidase like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.028     1e+02      13      87 ..      30     149 ..      18     250 .. 0.74
   2 ?    7.1   0.0    0.0022       7.9      22      73 ..     289     357 ..     278     407 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.028
  Glycohydro_20b2  13 ktlrlspsnfrlkvesaasea.....................................veellheafdrtlkelf.kskvvpwakeprnskfep 68 
                      +++r++++  r++ + + +++                                     ++ ll++ ++r++k+l   s+v   a ++r+ k  p
       CCD24715.1  30 EEVRINNHMARTNTRWQNQNHssnrnhdfypgqlygtesgklfhagkimivlvglpatSKTLLAHSLERYCKWLGvVSRVFNLADYRRKFKDVP 123
                      55555555555544444433345556778888888888888888888888888888889999*********88863445555555555433333 PP

  Glycohydro_20b2  69 kvst.........avskkkediktvevs 87 
                        ++         ++ + +++i++v+++
       CCD24715.1 124 --KEyffggetstKAIEVRKQIRKVSIN 149
                      ..22345555444444455555555444 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0022
  Glycohydro_20b2  22 frlkvesaaseaveellheafdrtlkelfkskvvpwakeprnskfepkvst.................a 73 
                      f+   +s ++e++++ l++ ++r+++++ k+  v+  ++p  ++ ++  s+                  
       CCD24715.1 289 FFCSSNSIHQEDISNCLKSIYNRVIEQIKKEDIVRRNFSPSLQEDDRPNSPiltiwcehkfqleedsdI 357
                      444445555999*************************99998776665555777777777555444442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3218.92
//
Query:       CCD24716.1  [L=236]
Description: hypothetical protein NDAI_0D04020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-19   68.7   1.0    4.1e-19   68.7   1.0    1.6  2  PAP2      PAP2 superfamily
  ------ inclusion threshold ------
      0.021   13.8   8.2      0.028   13.3   8.2    1.3  1  MFS_1     Major Facilitator Superfamily
      0.028   14.6   0.0       0.27   11.3   0.0    2.1  2  DUF212    Divergent PAP2 family
      0.028   14.3   0.4      0.076   13.0   0.4    1.7  1  UPF0542   Uncharacterised protein family UPF0542
       0.26   11.5   9.3        3.5    7.9   1.1    2.6  2  KleE      Uncharacterized KleE stable inheritance protein


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4         2   7.1e+03      69      95 ..      41      47 ..      28      54 .. 0.43
   2 !   68.7   1.0   1.1e-22   4.1e-19       3     131 ..      59     182 ..      57     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
        PAP2 69 lllalllrrkrkkiglvllalilllla 95
                l+l+++                    +
  CCD24716.1 41 LILSFY--------------------L 47
                222222....................2 PP

  == domain 2  score: 68.7 bits;  conditional E-value: 1.1e-22
        PAP2   3 lalllalalaalltsvlKdlvgrpRPfflaeetkldtqvstletseskeakesfPSgHsafafalalllalllrrkrkkig...lvllalillllavlv 98 
                 ++++ + ++  ++++++K++++++RP++    +  + ++    +      ++++PS Hs+f+++l l+l+l +  ++++ +   + l + ++++l  +v
  CCD24716.1  59 CIMAAGQLSNEIFNNIIKNIIKQTRPYHNYFGESFQQNTLR--S------GYGMPSAHSQFMGFLTLYLSLRYIYNWNNLSafwKFLGISFITILGGCV 149
                 5566667788999*************987777777776443..3......589**********************999999999*************** PP

        PAP2  99 alsRlylgvHflsDvlaGlliGialaalayrlv 131
                 ++sRlyl +H +++vl+G+ +G++++  +y lv
  CCD24716.1 150 CFSRLYLKYHSFNQVLVGWTLGTLTGSSYYLLV 182
                 ************************999888765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   8.2   7.9e-06     0.028     150     297 ..      30     184 ..      25     215 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.9e-06
       MFS_1 150 Wravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplvp...............awkallkdpvlwillialllfffgfsglltllply 233
                 + ++++ l ++++l+f l   ++  ++  ++    + ++      ++++                +++ + ++     l + +++  ++s+++ +l+ly
  CCD24716.1  30 FLSAYFSLLPILILSFYL--SWFIITRELEACIMAAGQL----SNEIFNniikniikqtrpyhnYFGESFQQN----TLRSGYGMPSAHSQFMGFLTLY 118
                 556777777777777666..7777777777777777774....333333321122222232333444555555....9999999999************ PP

       MFS_1 234 ..lqevlglsglllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt 297
                   l+  +++++l     +l+++++ +++++++++rl  ++ + ++ l++  l++l+  +++ll  +
  CCD24716.1 119 lsLRYIYNWNNLSAFWKFLGISFITILGGCVCFSRLYLKYHSFNQVLVGWTLGTLTGSSYYLLVGI 184
                 77777777778888888899999999999****************************999999877 PP

>> DUF212  Divergent PAP2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.7e-05      0.27      23      61 ..      85     123 ..      60     145 .. 0.66
   2 ?    0.9   0.0      0.13   4.8e+02     113     127 ..     159     173 ..     153     174 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.7e-05
      DUF212  23 iellkekkldlkllvstGgmPSsHsalvtalatavglee 61 
                 ++ +  ++++ ++l s  gmPS+Hs ++  l++++ l++
  CCD24716.1  85 YHNYFGESFQQNTLRSGYGMPSAHSQFMGFLTLYLSLRY 123
                 333455678888888889*********887777766643 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.13
      DUF212 113 HtpleVlvGallGii 127
                 H+  +VlvG +lG++
  CCD24716.1 159 HSFNQVLVGWTLGTL 173
                 999**********86 PP

>> UPF0542  Uncharacterised protein family UPF0542
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.4   2.1e-05     0.076      12      44 ..      19      50 ..       7      59 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.1e-05
     UPF0542 12 lvlyvakdPweFlttvlliltPllllsaflsyK 44
                ++ly  +dP +Fl    + l P+l+ls +ls+ 
  CCD24716.1 19 YILYDPNDPISFLSAY-FSLLPILILSFYLSWF 50
                689999*******875.6899***********5 PP

>> KleE  Uncharacterized KleE stable inheritance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.6    0.0014       4.8      61     103 ..     113     155 ..     107     159 .. 0.78
   2 ?    7.9   1.1   0.00098       3.5      38      60 ..     181     204 ..     172     210 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
        KleE  61 sidvlfqflrmlyhwntpgvhagwtfl..ahfavltlltyfvsly 103
                  + +l+  lr +y wn+  ++a w fl   ++++l    +f  ly
  CCD24716.1 113 GFLTLYLSLRYIYNWNN--LSAFWKFLgiSFITILGGCVCFSRLY 155
                 57789999*******97..67889997325667777888888777 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00098
        KleE  38 laalvkfvwva.tvlvwpvlkwvl 60 
                 l ++++ + ++  vl wp++kw+ 
  CCD24716.1 181 LVGIIREIGIIdWVLTWPIMKWLY 204
                 66677766544279********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1656.26
//
Query:       CCD24717.1  [L=86]
Description: hypothetical protein NDAI_0D04030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-30  102.7   1.4    9.8e-30  102.6   1.4    1.0  1  ACBP      Acyl CoA binding protein
     0.0047   17.3   0.2      0.065   13.6   0.0    1.9  2  FERM_M    FERM central domain


Domain annotation for each model (and alignments):
>> ACBP  Acyl CoA binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   1.4   1.1e-33   9.8e-30       2      83 ..       4      81 ..       3      83 .. 0.94

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 1.1e-33
                HHHHHHHHHH.H...HSTS---HHHHHHHHHHHHHHHTSS--S----TTSHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHH CS
        ACBP  2 eeFekavaavkklekklkkkpsneeklelYglyKqateGdvntsrPsaldfkgkaKwdaWkalkglskeeAkkkYiellkel 83
                + Fe+ ++av++    l+kkps++e+l+ Y+lyKqat+Gd n+++P+++++k + Kw+aW++lkg+s+eeA+kkYiel+++l
  CCD24717.1  4 QLFEEKAKAVQE----LPKKPSDDELLQVYALYKQATVGDNNKEKPGIFNLKDRSKWNAWEELKGMSQEEAEKKYIELVDSL 81
                57********55....67789********************999***********************************987 PP

>> FERM_M  FERM central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.027   2.4e+02      13      62 ..       4      49 ..       1      54 [. 0.70
   2 !   13.6   0.0   7.2e-06     0.065      86     110 ..      57      81 ..      53      85 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.027
                HHHHHHHHHHHTTSSXXXHHHHHHHHHHHHHHHHHHHHCXXXXXXXSSSX CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      FERM_M 13 llYeQakwdllegeldcteeeallLAaLqlqiekgdlsesssekakesln 62
                +l+e+  +++ e   + +++e+l+  aL  q++ gd +    +++++ +n
  CCD24717.1  4 QLFEEKAKAVQELPKKPSDDELLQVYALYKQATVGDNN----KEKPGIFN 49
                66666666666655667889999999999999999955....55555555 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 7.2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
      FERM_M  86 eahqnvaqlslaeaklkylqawqsl 110
                 +a+++++++s++ea+ ky++++ sl
  CCD24717.1  57 NAWEELKGMSQEEAEKKYIELVDSL 81 
                 5899*****************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       552  (0.0307881); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 625.78
//
Query:       CCD24718.1  [L=239]
Description: hypothetical protein NDAI_0D04040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-57  193.4   5.4    1.7e-57  193.0   5.4    1.2  1  ORMDL     ORMDL family
  ------ inclusion threshold ------
      0.033   14.1   0.0      0.074   13.0   0.0    1.5  1  PI3K_C2   Phosphoinositide 3-kinase C2
        4.6    7.7   6.2       0.61   10.5   2.1    1.7  2  SCIMP     SCIMP protein


Domain annotation for each model (and alignments):
>> ORMDL  ORMDL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.0   5.4   2.9e-61   1.7e-57       1     136 []      91     226 ..      91     226 .. 0.99

  Alignments for each domain:
  == domain 1  score: 193.0 bits;  conditional E-value: 2.9e-61
       ORMDL   1 nkntewvnskglwviyiviilllkllllalpgvseevawtltnlvhnlvtyillHwikGtPfetadqgeydeltlWEQidegeqytptrkfLtvvPivL 99 
                 n+n++wv+++g+w+i++viilllkl++++lpg+++e++wtltn+++++++y+++H+ikGtPf++ + g+yd+lt+WEQid+++ +tp+rkfL++vPi+L
  CCD24718.1  91 NMNASWVDQRGAWIIHVVIILLLKLFYNLLPGITTEWSWTLTNMTYVIGSYVMFHLIKGTPFDF-NGGAYDNLTMWEQIDDETLFTPSRKFLIAVPIAL 188
                 99**************************************************************.********************************** PP

       ORMDL 100 fllsthytkydlelfvinlivllvv.vipKlpfmhrvR 136
                 fl+sthy++yd +lf +n+i +++v v+pKlp++hr+R
  CCD24718.1 189 FLVSTHYSHYDFKLFSWNFILTFLVaVVPKLPVTHRLR 226
                 **********************9999**********99 PP

>> PI3K_C2  Phosphoinositide 3-kinase C2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.2e-05     0.074      22      66 ..     191     235 ..     185     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
                 E.E-S-SETT.TTTEEEEEEEEEEE.CCCS-TTEEEEEEEEEEEEC CS
     PI3K_C2  22 vqstklksfsfksikwnewltfpiq.isdLPrsarLvitiwevkgk 66 
                 v st +++++fk ++wn  ltf +  +++LP   rL+i+i  ++g+
  CCD24718.1 191 V-STHYSHYDFKLFSWNFILTFLVAvVPKLPVTHRLRISIPGITGR 235
                 5.9********************98459***********9887776 PP

>> SCIMP  SCIMP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.1    0.0001      0.61      49     123 ..       7      86 ..       1      95 [. 0.73
   2 ?   -2.3   0.1      0.97   5.8e+03       8      20 ..     102     114 ..      92     120 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0001
       SCIMP  49 qkerdeekmyenvlnqspvqlPplPPrgllssed...sspqetksqppatyslvnkvrnkktvsipsyiePe..edyddv 123
                 +++ +    y    +q++++l p+P  + +s  +   ss+  ++s +      v+  r+++  si s++ePe  ed +d 
  CCD24718.1   7 HSTPQATSSYTTSYDQKNSELKPFPSSSGHSIMTplsSSRSHSESLSKQNIEPVKDHRRRRSSSIISHVEPEtfEDENDQ 86 
                 5555667789999999999**99998765554433327777777777889999******************933344444 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.97
       SCIMP   8 fWiilavaiivvs 20 
                  Wii  v i+++ 
  CCD24718.1 102 AWIIHVVIILLLK 114
                 5888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1911.99
//
Query:       CCD24719.1  [L=366]
Description: hypothetical protein NDAI_0D04050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-67  226.7   0.0    3.8e-67  226.4   0.0    1.1  1  Pkinase        Protein kinase domain
    4.6e-34  117.9   0.1    7.6e-34  117.2   0.1    1.5  1  Pkinase_Tyr    Protein tyrosine kinase
    7.4e-05   22.2   0.0    0.00012   21.5   0.0    1.4  1  Kinase-like    Kinase-like
    0.00076   18.9   0.2      0.004   16.5   0.2    1.9  2  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0015   17.6   0.2     0.0025   16.8   0.2    1.4  1  Haspin_kinase  Haspin like kinase domain
  ------ inclusion threshold ------
      0.016   15.1   0.0       0.03   14.3   0.0    1.5  1  APH            Phosphotransferase enzyme family
      0.029   14.0   0.1      0.058   13.0   0.1    1.5  1  FTA2           Kinetochore Sim4 complex subunit FTA2
      0.041   13.5   0.1      0.067   12.8   0.1    1.3  1  RIO1           RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.4   0.0   1.7e-70   3.8e-67       1     264 []      13     312 ..      13     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 226.4 bits;  conditional E-value: 1.7e-70
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHH..H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee.....kdelylvleyveggeladlle..r 91 
                 y+ +  +GeG++G+V +a++k +g +vA+Kki+  ++     +++lrEik+l  ++ h+ni+ +++ ++       + +ylv+e++e++ l++++   +
  CCD24719.1  13 YQLVDLIGEGAYGTVCSAIHKPSGVKVAIKKIQPFSKAMFV-TRTLREIKLLTYFHnHENIISILDKVKPisvnkLNAVYLVQELMETD-LQKIIMnsN 109
                 677899**************************998777644.79***********99*********999888887899*********77.888887666 PP

                 HSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHH.TTSCBSHHHHHH CS
     Pkinase  92 kgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk........ltsfvgtseYlAPEvl.keneyskkvDvW 181
                 +  ls+++++ +++qil++l+ +Hs+++iHrDlKp+N+L++++ +lK++DFGl++ l+sss+        +t++v+t++Y+APE++ + +ey++++D+W
  CCD24719.1 110 NNPLSDDHIQYFTYQILRALKAIHSAQVIHRDLKPSNLLLNSNCDLKVCDFGLSRCLTSSSDsretlvgfMTEYVATRWYRAPEIMlTFQEYTTAMDIW 208
                 777********************************************************9999**********************9889********** PP

                 HHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT......SHH...HHHTTS......................-HHHHHHHHHHT-SSGCCS CS
     Pkinase 182 slGvilyelltgkppfsgekgkekvekeldqlekilkilg......etkeklpeasei......................seeakdllkkllkkdpkkR 252
                 s+G+il+e+++g+p+f+g++ +++ + +l+        lg        + k+++a+e                       +++++dll+k+l  +p+kR
  CCD24719.1 209 SVGCILAEMVSGRPLFPGRDYHHQLWLILEV-------LGtpsledFAQIKSKRAKEYisnlpmrspmpwvnvlntqrnlNPDMLDLLTKMLLFNPNKR 300
                 *****************66666655555554.......443222223334444444447788999999******************************* PP

                 TTHHHHHTSGGG CS
     Pkinase 253 ltaeellqhpyl 264
                 +ta+e+l+hpyl
  CCD24719.1 301 ITAAEALNHPYL 312
                 **********97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.2   0.1   3.4e-37   7.6e-34       3     208 ..      15     226 ..      13     308 .. 0.88

  Alignments for each domain:
  == domain 1  score: 117.2 bits;  conditional E-value: 3.4e-37
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE.....SSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct.....keepllivteyvkgGdLlkfLrk 94 
                  l + +GeGa+G+V+++  k     + vkVa+K+++  +++   ++ l+e+k+++ + +h+ni+++l  +      k + +++v e+++  dL+k + +
   CCD24719.1  15 LVDLIGEGAYGTVCSAIHK----PSGVKVAIKKIQPFSKAMFVTRTLREIKLLTYFhNHENIISILDKVKpisvnKLNAVYLVQELMET-DLQKIIMN 107
                  56789************99....899*****************************************998876655666********86.99999999 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE....EETTSSTSGGGGS.-HHHH.HHSEEEHHH CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey....vkkeeaklpvkWm.apEsl.kekkftsks 186
                  +++++l+ +++  f++q+ ++++ ++s +++Hrdl   N Ll++n   k++DfGL+r ++++++     v   ++ +  +W+ apE++ + +++t++ 
   CCD24719.1 108 SNNNPLSDDHIQYFTYQILRALKAIHSAQVIHRDLKPSNLLLNSNCDLKVCDFGLSRCLTSSSDSretlVGFMTEYVATRWYrAPEIMlTFQEYTTAM 205
                  99*******************************************************99777666222233456778999*98***8715577***** PP

                  HHHHHHHHHHHHHTTSSGTTTT CS
  Pkinase_Tyr 187 DvWsfGvllwEiftlgespypg 208
                  D+Ws G +l E+++ g+  +pg
   CCD24719.1 206 DIWSVGCILAEMVS-GRPLFPG 226
                  ************99.6655554 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   5.6e-08   0.00012     115     240 ..      92     214 ..      33     221 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 5.6e-08
  Kinase-like 115 lllpaasvdleilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.sevekgfaPpE 211
                  l+   +++dl+ +       ++++++l +   ++ T q++r    +++ +++h ++++ nlll+ +  l++ +f+ L r  t+     e+ +gf   E
   CCD24719.1  92 LVQELMETDLQKIIM-----NSNNNPLSDDHIQYFTYQILRALKAIHSAQVIHRDLKPSNLLLNSNCDLKVCDFG-LSRCLTSSSDsRETLVGFMT-E 182
                  333345666665532.....2335666666778999999***********************************8.56665555542577789885.5 PP

  Kinase-like 212 llgsrgg...ytrknktkmthkldaWqlGlvi 240
                   ++ r       +    ++t ++d W +G   
   CCD24719.1 183 YVATRWYrapEIMLTFQEYTTAMDIWSVGCIL 214
                  555543313333445567999*******9865 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.082   1.8e+02      75     109 ..      33      67 ..      29      80 .. 0.81
   2 !   16.5   0.2   1.8e-06     0.004      55     162 ..      53     158 ..      40     175 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.082
         Kdo  75 vpkpvaagavkvgleyrAlllterlegaqdLedll 109
                  p  v  +++k++++ +A+ +t+ l +++ L+ + 
  CCD24719.1  33 KPSGVKVAIKKIQPFSKAMFVTRTLREIKLLTYFH 67 
                 57788999999999999*****9999887776554 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.8e-06
         Kdo  55 rtravrEfrllkrLeeagvavpkpvaagavkvgle.yrAlllterlegaqdLedllakwae..laeelkrallkavgrliaklhragvnHadlyaknil 150
                 +tr  rE++ll  +++    +   +  +++ + ++   A+ l+ +l +  dL++++ + ++  l++   +    ++ r+ + +h+a+v H+dl + n+l
  CCD24719.1  53 VTRTLREIKLLTYFHNHENII--SILDKVKPISVNkLNAVYLVQELME-TDLQKIIMNSNNnpLSDDHIQYFTYQILRALKAIHSAQVIHRDLKPSNLL 148
                 566666666666666554222..2333333333433455555555544.4888888876667889999999999************************* PP

         Kdo 151 lqqeeeeeaeiw 162
                 l+ +   +++++
  CCD24719.1 149 LNSNC--DLKVC 158
                 *9987..44444 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   1.1e-06    0.0025     180     259 ..      84     168 ..      11     177 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 1.1e-06
  Haspin_kinase 180 seqqlflvlllkdkGtdLeevklkswkqal...sifwqivkiLyvaE..tkfeFEHRdLhldniLvdknlnvtlidlklsRless 259
                     ++ + ++l+ + + tdL+++ ++s ++ l   +i + + +iL +     + +  HRdL+  n L+++n    ++d+ lsR  +s
     CCD24719.1  84 VNKLNAVYLVQELMETDLQKIIMNSNNNPLsddHIQYFTYQILRALKaiHSAQVIHRDLKPSNLLLNSNCDLKVCDFGLSRCLTS 168
                    4566678888888999999996655554431124666666666554411456899**************************9733 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.3e-05      0.03     153     196 ..     126     163 ..      79     166 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.3e-05
                 HHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 153 laalaallpgelptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 l+al+a      +++++H+Dl+p Nll++++ +    v Df+++
  CCD24719.1 126 LRALKA-I---HSAQVIHRDLKPSNLLLNSNCDLK--VCDFGLS 163
                 333332.2...469***************554444..7777765 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.6e-05     0.058     161     211 ..      93     155 ..      52     162 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
        FTA2 161 VKel........ellkeqeelevsqlp....kllrdlkklhklgIvvrDlkeenyidgkLvDl 211
                 V+el         + +++++l+ ++++    ++lr lk +h++ +++rDlk++n++ ++ +Dl
  CCD24719.1  93 VQELmetdlqkiIMNSNNNPLSDDHIQyftyQILRALKAIHSAQVIHRDLKPSNLLLNSNCDL 155
                 55555555565555566666666665433339***********************98888887 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     3e-05     0.067      77     150 ..      86     161 ..      44     176 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3e-05
                 EEETTEEEEE--EETTEEGGBHHHCG.-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1  77 elkrhvlvmefigedgvaapklkdve.e.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvs 150
                 +l+   lv e++++d  ++   ++ +   +++++   +++l++++ +++ a+++H DL   N+l++++ ++ + D++
  CCD24719.1  86 KLNAVYLVQELMETDLQKIIMNSNNNpLsDDHIQYFTYQILRALK-AIHSAQVIHRDLKPSNLLLNSNcDLKVCDFG 161
                 445556899999955444443333333358889999999999655.556******************9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2801.70
//
Query:       CCD24720.1  [L=547]
Description: hypothetical protein NDAI_0D04060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       887  (0.0494729); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.35
# Mc/sec: 4667.57
//
Query:       CCD24721.1  [L=265]
Description: hypothetical protein NDAI_0D04070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-17   61.7   0.1    1.2e-16   60.7   0.1    1.5  1  DUF2439   Protein of unknown function (DUF2439)


Domain annotation for each model (and alignments):
>> DUF2439  Protein of unknown function (DUF2439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.1   6.9e-21   1.2e-16      12      81 .]       7      85 ..       5      85 .. 0.94

  Alignments for each domain:
  == domain 1  score: 60.7 bits;  conditional E-value: 6.9e-21
     DUF2439 12 vtkKsKkWhDGflklhsfnkrvvLyde.esklvessflkne........keeleegeelelekylvqveeliseeerdi 81
                ++kK+K+WhDG+lk++++n+r++Ly+e ++ +++s+f++n+         e ++ +e+  + ++l+ ++++is + r++
  CCD24721.1  7 IKKKHKTWHDGKLKYFEVNNRFILYTEeSNIVLASEFVTNSkavrsfldPEGFDIEEHQIFARFLIIISDVISDYTREV 85
                68*************************677789******99*******999***********************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.46
# Mc/sec: 1737.28
//
Query:       CCD24722.1  [L=337]
Description: hypothetical protein NDAI_0D04080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-90  303.0   1.4    2.3e-90  302.8   1.4    1.0  1  TAL_FSA   Transaldolase/Fructose-6-phosphate aldolase
  ------ inclusion threshold ------
      0.012   15.6   0.6      0.044   13.9   0.5    2.0  2  DUF5590   Domain of unknown function (DUF5590)


Domain annotation for each model (and alignments):
>> TAL_FSA  Transaldolase/Fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.8   1.4   2.5e-94   2.3e-90       1     284 [.      28     328 ..      28     331 .. 0.94

  Alignments for each domain:
  == domain 1  score: 302.8 bits;  conditional E-value: 2.5e-94
                 EEEE---HHHHHHHHHTT---EEE--HHHHHH..T...TS.-HHHHHHHHHHH............................H-S-EEEE-S-...-SHH CS
     TAL_FSA   1 lvlDtadrelikklleekgiqgvTtNPsliekaik...ykalydeaieeikkeg....kkvkeaydkLavedilealdllgadgrvslEVdarlsddte 92 
                 +v+Dt+d+e+i k+ +     + TtNP+li++a k   y++l+d+aie++k++g    +k+++a+dkL ve+++e+l+++  +g+vs+EVdarls+d+e
  CCD24722.1  28 VVADTGDFEQIAKYEP----MDSTTNPTLILAASKkeeYAKLMDNAIEYGKSHGdtleEKAENAIDKLLVEFGTEILKIV--PGKVSTEVDARLSFDKE 120
                 69**************....************9999*********************9**********************..***************** PP

                 HHHHHHHHHHTT-T.......TEEEEEESSHHHHHHHHHHH.HTT--EEEEEE-SHHHHHHHHHHT-SEEEEBHHHHHTTT............S-HHHH CS
     TAL_FSA  93 atieeArrlialye.....renvlIKiPateeGikAikeLk.keGinvnvTliFsleqalaaaeagasviSpFvgRiddllkkleekdklkgkddgval 185
                 a++ +A  l++ly+     +e+v+IK+ +t+eGi+A+keL+ k+Gi++n+Tl+Fs+ qa+a+aea++s++SpFvgRi d++k++++kd+  ++d+g ++
  CCD24722.1 121 AMVSKAIDLMKLYDeagisKERVYIKLSSTWEGIQAAKELEeKHGIHTNLTLLFSFVQAVACAEANVSLVSPFVGRITDYYKSKTGKDYPPEDDPGLKS 219
                 ****************************************9678******************************************************* PP

                 HHHHHHHHHHHT-S-EEEEBS--SHHHHHHHHT-SEEEE-HHHHHHHT--HHH.........................................HHHHH CS
     TAL_FSA 186 vkeiynyykklgysTkvmaasfrnveeveelagcdtvTippkllealakhgkt.......seklee.eeiek..lleklfrlginedavaeelldegik 274
                 v++iy+yykk++y+T +maas+rn+ +v++lag d +T+++++l+ l ++++        +++ e+ +e e+   +e++fr ++n da+a+++l++gi+
  CCD24722.1 220 VERIYYYYKKHSYDTVIMAASMRNIGQVKQLAGIDNLTLSLSVLDSLLNSHESiekrlvpEDAKEKgDEKETfiNDESKFRYQLNDDAMATDKLADGIR 318
                 ************************************************98777788776533333345555588999********************** PP

                 HHHHHHHHHH CS
     TAL_FSA 275 kFakdlekll 284
                 kFa+d+ +l 
  CCD24722.1 319 KFAADAITLT 328
                 *****98775 PP

>> DUF5590  Domain of unknown function (DUF5590)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.44   3.9e+03       1      14 [.     178     191 ..     178     192 .. 0.88
   2 ?   13.9   0.5     5e-06     0.044      11      31 ..     216     236 ..     214     236 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.44
                 HHHHHHHHHSSEEE CS
     DUF5590   1 eAiaiAkkeadLtk 14 
                 +A+a A+  ++L +
  CCD24722.1 178 QAVACAEANVSLVS 191
                 89*****9999976 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5e-06
                 SEEEEEEEEEEESSSEEEEEE CS
     DUF5590  11 dLtkvddfylYngketYyvVt 31 
                 +L++v+++y+Y+ k +Y +V+
  CCD24722.1 216 GLKSVERIYYYYKKHSYDTVI 236
                 69*****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2545.51
//
Query:       CCD24723.1  [L=456]
Description: hypothetical protein NDAI_0D04090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00024   21.4  12.8       0.01   16.2   0.1    4.4  4  zf-C2H2        Zinc finger, C2H2 type
     0.0018   18.0   2.5        3.1    7.7   0.0    3.4  3  zf-C2H2_11     zinc-finger C2H2-type
  ------ inclusion threshold ------
       0.72   10.8  15.9       0.74   10.8   0.1    4.8  5  zf-C2H2_4      C2H2-type zinc finger
       0.81   10.2  17.8         13    6.4   0.1    4.8  4  zf-H2C2_2      Zinc-finger double domain
        4.8    7.3  11.5        3.1    7.9   0.4    2.7  3  zf-C2H2_aberr  Aberrant zinc-finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       2.8   9.9e+03       5      17 ..     117     128 ..     116     129 .. 0.66
   2 !    7.6   0.1    0.0016       5.7       1      20 [.     304     323 ..     304     325 .. 0.95
   3 ?    4.3   0.5     0.018        64       1      19 [.     332     355 ..     332     360 .. 0.88
   4 !   16.2   0.1   2.9e-06      0.01       2      23 .]     383     407 ..     382     407 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.8
                 TTTEEESSHHHHH CS
     zf-C2H2   5 dCgksFkrksnLk 17 
                 +C++ + ++s+Lk
  CCD24723.1 117 HCSQNC-QQSELK 128
                 677777.677765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0016
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                 y+C +C+ +F +  ++ +H+
  CCD24723.1 304 YRCAHCPSMFGTIFEYAAHM 323
                 9******************9 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.018
                 EEET..TTT...EEESSHHHHHHH CS
     zf-C2H2   1 ykCp..dCg...ksFkrksnLkrH 19 
                 +kCp   C+      +r+s+L+rH
  CCD24723.1 332 FKCPfrLCPwkiLGLPRRSDLRRH 355
                 899999999999999********* PP

  == domain 4  score: 16.2 bits;  conditional E-value: 2.9e-06
                 EET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirt.H 23 
                 +Cp   C k F rk+ L+rHi + H
  CCD24723.1 383 ECPnlFCEKEFYRKDALNRHIAIvH 407
                 699999***************9988 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.071   2.6e+02       3      10 ..     302     309 ..     301     314 .. 0.85
   2 !    6.7   0.1    0.0017         6      20      29 .]     352     361 ..     350     361 .. 0.95
   3 !    7.7   0.0   0.00085       3.1      19      28 ..     398     407 ..     389     408 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.071
  zf-C2H2_11   3 stcqCleC 10 
                  +++C +C
  CCD24723.1 302 GSYRCAHC 309
                 599***** PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0017
  zf-C2H2_11  20 LsRHlfIvHK 29 
                 L+RH+ I HK
  CCD24723.1 352 LRRHCAIQHK 361
                 9********9 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.00085
  zf-C2H2_11  19 sLsRHlfIvH 28 
                 +L+RH  IvH
  CCD24723.1 398 ALNRHIAIVH 407
                 6********* PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0         5   1.8e+04      10      21 ..      41      51 ..      39      52 .. 0.79
   2 ?   -2.2   0.2       3.1   1.1e+04       4      13 ..     116     124 ..     116     129 .. 0.61
   3 ?    7.4   0.1    0.0026       9.4       1      20 [.     304     323 ..     304     325 .. 0.94
   4 ?   -0.2   2.3      0.74   2.7e+03      11      24 .]     347     360 ..     332     360 .. 0.58
   5 ?   10.8   0.1   0.00021      0.74       3      24 .]     384     407 ..     382     407 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5
   zf-C2H2_4 10 FsskkaLlrHlk 21
                F + +++  H+k
  CCD24723.1 41 F-TLDSMVEHIK 51
                6.8889999987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 3.1
   zf-C2H2_4   4 piCgksFssk 13 
                 p+C++++  +
  CCD24723.1 116 PHCSQNC-QQ 124
                 6787776.44 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0026
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHl 20 
                 ++C +C+  F +  ++  H+
  CCD24723.1 304 YRCAHCPSMFGTIFEYAAHM 323
                 89*****************9 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.74
   zf-C2H2_4  11 sskkaLlrHlkthH 24 
                 +++++L+rH++ +H
  CCD24723.1 347 PRRSDLRRHCAIQH 360
                 34455999988777 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 0.00021
   zf-C2H2_4   3 Cpi..CgksFsskkaLlrHlkthH 24 
                 Cp   C k F +k+aL+rH++ +H
  CCD24723.1 384 CPNlfCEKEFYRKDALNRHIAIVH 407
                 55556***************9998 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.6     0.035   1.3e+02       9      26 .]     299     315 ..     295     315 .. 0.72
   2 ?    3.4   0.2     0.032   1.2e+02       4      20 ..     321     339 ..     318     340 .. 0.75
   3 ?    6.0   1.9    0.0048        17       1      24 [.     351     393 ..     351     395 .. 0.73
   4 ?    6.4   0.1    0.0035        13       1      13 [.     398     411 ..     398     427 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.035
   zf-H2C2_2   9 HtgekpyeCplCdkaFkt 26 
                 H+    y C  C+  F t
  CCD24723.1 299 HK-RGSYRCAHCPSMFGT 315
                 33.234********9976 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.032
   zf-H2C2_2   4 rHirkHtgekpyeCp..lC 20 
                  H+ +   +++++Cp  lC
  CCD24723.1 321 AHMDEFEIKREFKCPfrLC 339
                 57777777889****6667 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0048
   zf-H2C2_2   1 nLrrHirk.Ht...gekpy..............eCp..lCdkaF 24 
                 +LrrH++  H+   +e+ +              eCp  +C k F
  CCD24723.1 351 DLRRHCAIqHKhelPES-LkeelnlkdeaypstECPnlFCEKEF 393
                 69***997577666555.234446667777999****99***99 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0035
   zf-H2C2_2   1 nLrrHir.kHtgek 13 
                 +L+rHi+ +H +e+
  CCD24723.1 398 ALNRHIAiVHEKEN 411
                 79****955*9997 PP

>> zf-C2H2_aberr  Aberrant zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       2.3   8.2e+03      59      80 ..     140     164 ..     117     186 .. 0.43
   2 ?    7.9   0.4   0.00087       3.1       8      75 ..     309     370 ..     304     379 .. 0.78
   3 ?    5.4   2.0     0.005        18       3      67 ..     384     448 ..     382     454 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.3
  zf-C2H2_aberr  59 ehlekeha...akllellkeleiei 80 
                    +h+e+  +   + l + +k+ + +i
     CCD24723.1 140 PHFEQCNTpniYYLPQEIKKETPNI 164
                    3444444411122222333332222 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00087
  zf-C2H2_aberr   8 CdlkyssvlglrrhlveykhslytnsefslkCpvrkCsesivelentelleehlekehaakllellke 75 
                    C  ++ ++  +  h+ e++       + ++kCp+r C   i  l     l+ h   +h ++l e lke
     CCD24723.1 309 CPSMFGTIFEYAAHMDEFE------IKREFKCPFRLCPWKILGLPRRSDLRRHCAIQHKHELPESLKE 370
                    5555555555555555554......46799****************************9999998886 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.005
  zf-C2H2_aberr   3 ClykaCdlkyssvlglrrhlveykhslytnsefslkCpvrkCsesivelentelleehlekehaa 67 
                    C+   C+  + + ++l+rh+   + +     +++lk  +++C+ + +e   + +++e l k h +
     CCD24723.1 384 CPNLFCEKEFYRKDALNRHIAIVHEKENSRFNKRLKKLYEECAYIATEEGRVAYIREQLLKDHKT 448
                    88899999999********9776665555556799999****98888877888888888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3396.11
//
Query:       CCD24724.1  [L=202]
Description: hypothetical protein NDAI_0D04100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1570.50
//
Query:       CCD24725.1  [L=373]
Description: hypothetical protein NDAI_0D04110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-51  174.6   0.1    3.1e-51  174.3   0.1    1.1  1  Pkinase         Protein kinase domain
    3.8e-28   98.5   0.0    5.7e-28   97.9   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    3.9e-07   30.2   0.0      0.018   15.0   0.0    2.1  2  APH             Phosphotransferase enzyme family
    8.7e-07   28.5   0.0    2.5e-06   27.0   0.0    1.6  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.032   13.6   0.0      0.056   12.8   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.084   11.6   0.0       0.13   11.0   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
      0.084   12.9   0.4        0.2   11.6   0.4    1.7  1  RXT2_N          RXT2-like, N-terminal
          9    5.8  13.2         16    5.0  13.2    1.3  1  SR-25           Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.3   0.1   1.4e-54   3.1e-51       3     208 ..       4     216 ..       2     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 174.3 bits;  conditional E-value: 1.4e-54
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS..CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH....HHSS- CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk..hpnivrlyevfeekdelylvleyveggeladlle....rkgsl 95 
                 +l+k+ +G+f++Vyka +++ ++ vA+K+++k+k + +    v++E +i+k+l   hpn++ +++++e++d+++lvley+e+g++ d+l     +  +l
  CCD24725.1   4 NLTKIQSGTFSTVYKAWSSTLERYVALKIMSKSKYSAN---GVANEYNIMKHLGtgHPNVCSMLDYYEDNDNYVLVLEYCECGDMYDFLAiaksQGDAL 99 
                 577899***************************99984...59**********99*****************************999999877633345 PP

                 -HH....HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCB.SHHHHHHHHHHHHH CS
     Pkinase  96 see....eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl.keney.skkvDvWslGvily 188
                 s++    +  ki++q++++++y Hs gi HrD+KpeN+L+ ++g++K++D+G+a+  + s+  ++ +gt +Y+APE   ++  y + k+D+WslGv+ +
  CCD24725.1 100 SPSiielDFTKILRQLVSAIKYAHSLGIAHRDIKPENVLLTKEGNVKLADWGHATLESYSK--DTHIGTDNYRAPETFeDRDAYnTYKIDYWSLGVTSL 196
                 5445555999*********************************************988876..9**************7555667************** PP

                 HHHHSS-STTTSSHHHHHHH CS
     Pkinase 189 elltgkppfsgekgkekvek 208
                  ll+g+ pf++ + +++ ++
  CCD24725.1 197 YLLFGQCPFKNLSIQNSSSS 216
                 **********6665554444 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   2.5e-31   5.7e-28       5     213 ..       6     212 ..       3     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 97.9 bits;  conditional E-value: 2.5e-31
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS..-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT..... CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl..khpnivkllgvctkeepllivteyvkgGdLlkfLrkk..... 95 
                  +k+ +G+f++V+++  +    + e  Va+K++++++ +   + + +e++imk+l   hpn+ ++l  + +++++++v+ey++ Gd+ +fL        
   CCD24725.1   6 TKIQSGTFSTVYKAWSS----TLERYVALKIMSKSKYS--ANGVANEYNIMKHLgtGHPNVCSMLDYYEDNDNYVLVLEYCECGDMYDFLAIAksqgd 97 
                  6899**********888....88999******665555..489***********989*********************************98767676 PP

                  .CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHH CS
  Pkinase_Tyr  96 .ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWs 190
                    ++++   d +++  q+ ++++y +s  + Hrd+   NvLl+++  vk++D G a         ++k+++    ++ apE+++++    t k D Ws
   CCD24725.1  98 aLSPSIIELDFTKILRQLVSAIKYAHSLGIAHRDIKPENVLLTKEGNVKLADWGHATLE-----SYSKDTHIGTDNYRAPETFEDRDayNTYKIDYWS 190
                  656667778999******************************************99876.....455666777889********998767899***** PP

                  HHHHHHHHHTTSSGTTTTSHHHH CS
  Pkinase_Tyr 191 fGvllwEiftlgespypglknee 213
                   Gv+   ++  g+ p+++l+ ++
   CCD24725.1 191 LGVTSLYLLF-GQCPFKNLSIQN 212
                  ****998887.999999985443 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.4e-05     0.055       3      84 ..       6      87 ..       4     106 .. 0.83
   2 !   15.0   0.0   8.1e-06     0.018     162     224 ..     117     181 ..      97     190 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.4e-05
                EEE--.SSCEEEEEEETT.--EE.EEEE-TT.S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS CS
         APH  3 relsggasnrtylvttpa.gryv.lrrnppa.raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr 84
                + +++g+ + +y+  +++  ryv l++ +++ ++a+ +++e+ ++++L    + v  +l++ +d++ +    +++ey++  ++++
  CCD24725.1  6 TKIQSGTFSTVYKAWSSTlERYVaLKIMSKSkYSANGVANEYNIMKHLGTGHPNVCSMLDYYEDNDNYV---LVLEYCECGDMYD 87
                6788999999********999999*************************999********988887776...5677766666665 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 8.1e-06
                 S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCCCHCHHHH CS
         APH 162 g....elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrswtseldpeflaal 224
                 +    + + ++ H+D++p N+l++++++    + D++ a+l  +  D  +  ++++ +++ e ++a+
  CCD24725.1 117 SaikyAHSLGIAHRDIKPENVLLTKEGNVK--LADWGHATLESYSKDTHIGTDNYRAPETFEDRDAY 181
                 33666778899*************777777..9******9987777766666556666666666555 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.1e-09   2.5e-06     151     258 ..     113     213 ..     105     227 .. 0.80
   2 ?   -2.3   0.0      0.96   2.1e+03     110     136 ..     309     335 ..     306     341 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1.1e-09
  Kinase-like 151 lqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclkl 248
                   ql+  + + +++g+ h +++++n+ll ++g ++l + ++      +         +  pE++         + +  t+k+d W lG++ +++   + 
   CCD24725.1 113 RQLVSAIKYAHSLGIAHRDIKPENVLLTKEGNVKLADWGHATLESYSKDTHIGTDNYRAPETFED-------RDAYNTYKIDYWSLGVTSLYLLFGQC 203
                  5788889999***************************99865555554433445899******99.......566778***********999998888 PP

  Kinase-like 249 Pltlateeak 258
                  P+ +   + +
   CCD24725.1 204 PFKNLSIQNS 213
                  8876555444 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.96
  Kinase-like 110 vvnallllpaasvdleilnkvlqkrse 136
                  +++ l+ + a +  l+ ++k+l+k  +
   CCD24725.1 309 IISTLICIEAEQRSLHKFHKLLNKICT 335
                  7889999999999********998655 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.5e-05     0.056     122     161 ..     110     145 ..     105     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.5e-05
         Kdo 122 allkavgrliaklhragvnHadlyaknillqqeeeeeaei 161
                 ++l+++  +i+  h++g+ H+d+ + n+ll +e+    ++
  CCD24725.1 110 KILRQLVSAIKYAHSLGIAHRDIKPENVLLTKEG----NV 145
                 578899999**********************998....33 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     6e-05      0.13     299     363 ..      99     157 ..      85     187 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6e-05
  Pkinase_fungal 299 iekaespkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakels 363
                     ++     +++ + lr+ + + +  +   gi HrDi  +N+l+t     +e +  L+D  +a+ +s
      CCD24725.1  99 LSPSIIELDFTKILRQLVSAIKYAH-SLGIAHRDIKPENVLLT-----KEGNVKLADWGHATLES 157
                     5555555566666677777777777.778**************.....44555566666665555 PP

>> RXT2_N  RXT2-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   9.1e-05       0.2      90     154 ..     270     334 ..     205     336 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.1e-05
      RXT2_N  90 npykkvrleelLaPltspsdlithpslsrtykskaLteLalqlieliekEqeslvklkkLlevll 154
                  p  +v+  ++ + l s   l + + + + y+   L++ + +++  ie Eq+sl k++kLl++++
  CCD24725.1 270 APIMNVKNGKIFSYLDSQVPLYRWKDMVNNYNLFYLSKVIISTLICIEAEQRSLHKFHKLLNKIC 334
                 5666777777777777788888888899999999***************************9987 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  13.2     0.007        16      63      88 ..     212     237 ..     205     245 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.007
       SR-25  63 ssssssssssssssssssssssssdd 88 
                 +sssss sssssssss ss  s + d
  CCD24725.1 212 NSSSSSFSSSSSSSSSDSSMDSIDVD 237
                 34444444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 2921.51
//
Query:       CCD24726.1  [L=289]
Description: hypothetical protein NDAI_0D04120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-19   69.4   1.0    1.1e-18   67.3   1.0    1.8  1  MMU163    Mitochondrial protein up-regulated during meiosis
  ------ inclusion threshold ------
      0.042   12.8   0.0      0.061   12.3   0.0    1.2  1  GDE_C     Amylo-alpha-1,6-glucosidase


Domain annotation for each model (and alignments):
>> MMU163  Mitochondrial protein up-regulated during meiosis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   1.0   1.2e-22   1.1e-18      16     223 ..      45     273 ..      39     283 .. 0.69

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 1.2e-22
      MMU163  16 deRilkLGktlriLs.erLPtlLvnpLPqeiLsPsitLhLfPsthPhLPtvkGrvaYraalWtaPvaWgsvPlvgnvkLeilserivragtvleeeeke 113
                 d+   +LG   + L+   +P+lL++++ ++ L  +++L+L P  +P +Pt++Gr  Y a+l +  ++  +  l  + +L+ils + v + ++le++++ 
  CCD24726.1  45 DDHHANLGTITKYLTvGGIPNLLQKSIDDKYLCEDVQLRLLPTIYPYIPTIHGRSKYNASLNAIRLIVRNFILSEKCRLHILSVQTVLSKSTLEKNANF 143
                 6777889988888872579*****************************************************************************998 PP

      MMU163 114 eedlgdeklvvrWktegkeskkkeeg............gkaekekveksasskssks...ekskkeesksalssskegvnkglsvl.....lggdapif 192
                 +  ++++kl+v+W+t+ +e++ k+++            +     ++++ +s+++  +   + sk + +++ +s+  + +n +++         g++ i 
  CCD24726.1 144 KFITNHDKLIVKWQTCLSEDDCKTHKlenmkstklagkN----AAADDDESTSHIVDyilDPSKGQLNENIVSKHFQDINLSVAEDkedgeASGEREIK 238
                 889999**********85555555445555554443210....11111111111111000122222233334444455555554322111145667776 PP

      MMU163 193 klek...eeeftGlfifefDe.eGRiathtiehad 223
                 +++    ++  +G+ ifef+e + +i+ ht e+++
  CCD24726.1 239 EQKPkkiSKLLKGIQIFEFNEdNTKIQVHTFENIE 273
                 544311145678*******862679*****99987 PP

>> GDE_C  Amylo-alpha-1,6-glucosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.8e-06     0.061      58     126 ..      50     118 ..      36     157 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.8e-06
       GDE_C  58 illtFaktlrhGliPNlldegqealyntvdaslwlieaiekYleyagdaeilrriypvlqeilqkyvqG 126
                  l t +k+l  G iPNll++ ++  y + d +l l+ +i+ Y+ + +  +  +  ++ ++ i+++++  
  CCD24726.1  50 NLGTITKYLTVGGIPNLLQKSIDDKYLCEDVQLRLLPTIYPYIPTIHGRSKYNASLNAIRLIVRNFILS 118
                 56677889999********************************99988877788888888888877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2335.84
//
Query:       CCD24727.1  [L=922]
Description: hypothetical protein NDAI_0D04130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-26   92.5   8.6    2.2e-14   53.3   2.1    2.8  2  Bromodomain  Bromodomain
    2.4e-23   82.3   0.0    5.8e-23   81.1   0.0    1.7  1  BAH          BAH domain


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   2.1   2.5e-18   2.2e-14       7      83 ..      26     100 ..      22     101 .. 0.93
   2 !   42.1   0.6   7.3e-15   6.5e-11      13      82 ..     293     359 ..     279     361 .. 0.87

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 2.5e-18
                  HBHTTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain   7 ellehklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyelae 83 
                  +   ++++++F+ ++++ e+pdyy++ikkP++L+t+kk++   +Y+ +++f  d+ ++  Na++yn ++s iye+a+
   CCD24727.1  26 DSQGNEIYHIFETCPPKNEYPDYYEMIKKPVSLNTLKKRV--PHYNEPQEFVRDIVQIQWNAKTYNTKDSIIYEYAT 100
                  5566889*******************************97..78******************************997 PP

  == domain 2  score: 42.1 bits;  conditional E-value: 7.3e-15
                  CGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHH CS
  Bromodomain  13 laepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyela 82 
                  +++ F+       +p y +vi+ P++L +Ikkk++++ Yk ++ f+ d+ l++ N + +++++    e a
   CCD24727.1 293 ITQDFM---RLPDDPSYNTVIQFPMCLDEIKKKIKKRAYKDFESFQYDFILMVRNYKSFYRSNPIAIEKA 359
                  445555...66899***********************************************998877766 PP

>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.0   6.5e-27   5.8e-23       1     121 [.     399     515 ..     399     516 .. 0.98

  Alignments for each domain:
  == domain 1  score: 81.1 bits;  conditional E-value: 6.5e-27
                 CEEETTGEEEEEETTSTTEEEEEEEEEEEEETTSTCEEEEEEEEEEECGGGS.TTTTHCCCTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHCTECCHCH CS
         BAH   1 vtyavGdfVyfddtstdepyqirrIeeLkenakneeaeatvlvdwflrpeet.ksalklrqkrElfltrqseilplaairgkcrVvllsdleeaqnylp 98 
                 v+y  Gd+V++++ ++ +++ i++I +++ +++ e   ++++ +w++rpe+t ++ ++ ++k+E++ t q+ +  ++++ gkc Vv++++++  ++   
  CCD24727.1 399 VMYNIGDWVLIKNPNDPNKPIIGQIFRFWSTPNGE---KWLNSCWYYRPEQTvHRVDRIFYKNEVMKTGQYRDNLIQDVVGKCFVVHFTRFQRGNPVGY 494
                 69********************************9...************************************************************9 PP

                 HCSTTEEEEEEEEETTTTEEEE- CS
         BAH  99 kklddtFycslvydptaktfkkd 121
                   +   F+c++ y+++++ f+k+
  CCD24727.1 495 --EGPLFVCEFRYNESDRAFNKI 515
                 ..******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (922 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1202  (0.0670422); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.22s 00:00:00.90 Elapsed: 00:00:00.37
# Mc/sec: 7453.30
//
Query:       CCD24728.1  [L=241]
Description: hypothetical protein NDAI_0D04140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-47  161.5   0.3    2.9e-47  160.9   0.3    1.3  1  Folliculin  Vesicle coat protein involved in Golgi to plasma 
     0.0082   15.8   0.0      0.015   14.9   0.0    1.4  1  DUF2321     Uncharacterized protein conserved in bacteria (DU


Domain annotation for each model (and alignments):
>> Folliculin  Vesicle coat protein involved in Golgi to plasma membrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.9   0.3   3.3e-51   2.9e-47       2     183 ..      71     232 ..      70     234 .. 0.95

  Alignments for each domain:
  == domain 1  score: 160.9 bits;  conditional E-value: 3.3e-51
  Folliculin   2 sYvStqePlsperysllrqaclrsLScEtlprasggpifFgDeaaGytlayiFrlkDvkARGkkRvYalialstdk.....erlllkawsfiveafekl 95 
                 +Yv+tq+  s+ ry+l+++++ r++S+Et+++ ++ p++F+D+ +G++l ++F+l+D++ARG++R+Y++i+++++k     +++l+++w+fi+  f k+
  CCD24728.1  71 CYVTTQY--SSIRYQLMNSIIRRCFSEETMVY-DNMPLVFYDQLRGLNLIMGFKLYDANARGNERRYCFILTIDSKdsdaaMKILSNNWNFIIGGFFKM 166
                 6******..9**********************.****************************************************************** PP

  Folliculin  96 aaeiqalaeaelereskeeeassaassssalkadgsglsrregssfslskekylrrsksklkarsLaelvgdediFvelHawfvwlLk 183
                 +++i++++++el+++s+e+                      ++++ s  +++ylr +kskl a++L+el++d++iF+++H+w+++lL+
  CCD24728.1 167 INHINESHNKELKNQSNER---------------------DHTNGLSPLMSNYLRGNKSKL-AKNLVELTNDKNIFLKMHKWNTYLLN 232
                 ************8887733.....................356778888999********9.*************************8 PP

>> DUF2321  Uncharacterized protein conserved in bacteria (DUF2321)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.7e-06     0.015      26      98 ..       9      75 ..       2      92 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.7e-06
     DUF2321 26 eeyCekcGektitkcpkCsteirGkyyvegvislgkeyevpsyCkkCgkpyPWtkakleaakelieeleelsd 98
                +++C+k G +++   ++ +    G+   +++  l  +y+++syC++C   +P  ++++ +++  ++e+  +++
  CCD24728.1  9 AHFCDKHGPRILLVTQSSQN---GA-RSDDL--LLPDYPIDSYCESCLLHFPQGNETIRSMRSTLDEKCYVTT 75
                67899999888887776654...44.34453..4459***********************9999998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1822.40
//
Query:       CCD24729.1  [L=345]
Description: hypothetical protein NDAI_0D04150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-09   38.3   3.1      4e-05   24.0   0.1    2.9  2  EF-hand_7  EF-hand domain pair
    3.9e-08   32.6   0.6      0.045   13.7   0.0    4.3  4  EF-hand_6  EF-hand domain
    6.3e-07   28.5   0.0        4.6    7.0   0.1    4.6  4  EF-hand_1  EF hand
     0.0049   16.7   0.1         10    6.1   0.0    3.9  4  EF-hand_8  EF-hand domain pair
  ------ inclusion threshold ------
      0.017   14.6   0.1         27    4.5   0.0    3.7  4  EF-hand_5  EF hand
        2.3    7.7  19.3        3.7    7.0  19.3    1.2  1  FAM75      FAM75 family


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   1.3e-08     4e-05       7      71 .]     175     234 ..     170     234 .. 0.94
   2 !   13.5   0.7   2.4e-05     0.072      27      70 ..     274     336 ..     240     337 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.3e-08
   EF-hand_7   7 aFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlklyr 71 
                  F+ +D +++g+l+ eel++ll++     + +s +   +++ l++ f  ++ G+++ +EF+ ly+
  CCD24729.1 175 LFNNHDIRKRGRLTAEELQNLLQN-----DDNSRFCISSIDSLINLFGATRFGTVNQQEFVSLYK 234
                 6**********************9.....9999999999**********************9986 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 2.4e-05
   EF-hand_7  27 llrkifqga.........gegsklsd..ee......lellfkefDtdkdG..visfdEFlkly 70 
                 +++k+f+++         + + k+++  e+      l ++f++fD+d++G  ++ + +F +++
  CCD24729.1 274 VCEKFFDQFaefinennfSKELKFDKfvEAlvwllrLTKVFRNFDSDQNGiaQVHYKDFIEMT 336
                 77777777778855554533333333432266666699************99*******9986 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.5e-05     0.045       4      27 ..     174     197 ..     172     203 .. 0.92
   2 ?    1.3   0.0      0.14   4.3e+02      12      27 ..     219     234 ..     209     245 .. 0.83
   3 ?    2.6   0.0     0.053   1.6e+02      10      27 ..     247     264 ..     239     270 .. 0.85
   4 !    9.4   0.1   0.00037       1.1       2      24 ..     310     334 ..     309     337 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.5e-05
   EF-hand_6   4 eaFklfDkdgdGkidaeElrkalr 27 
                 ++F+ +D  + G ++aeEl+++l+
  CCD24729.1 174 QLFNNHDIRKRGRLTAEELQNLLQ 197
                 79********************98 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.14
   EF-hand_6  12 dgdGkidaeElrkalr 27 
                 ++ G+++++E++++++
  CCD24729.1 219 TRFGTVNQQEFVSLYK 234
                 5669********9998 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.053
   EF-hand_6  10 DkdgdGkidaeElrkalr 27 
                 D +g+ +i+ +E+ + l+
  CCD24729.1 247 DINGSCTISSAEFYNSLQ 264
                 678**********98776 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00037
   EF-hand_6   2 lreaFklfDkdgdG..kidaeElrk 24 
                 l ++F+ fD d +G  ++++++++ 
  CCD24729.1 310 LTKVFRNFDSDQNGiaQVHYKDFIE 334
                 5689**********99999999876 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0016       4.6       4      27 ..     174     197 ..     172     198 .. 0.90
   2 ?    2.9   0.0     0.032        97      15      28 ..     222     235 ..     210     236 .. 0.92
   3 !    5.6   0.0    0.0045        13       5      24 ..     242     261 ..     238     266 .. 0.78
   4 !    7.0   0.1    0.0015       4.6       2      15 ..     310     323 ..     309     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0016
                 HHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   4 eiFrefDkDgdGkIdfeEfkellk 27 
                 ++F+  D  + G+++ eE+++ll+
  CCD24729.1 174 QLFNNHDIRKRGRLTAEELQNLLQ 197
                 579999**************9986 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.032
                 SEEEHHHHHHHHHH CS
   EF-hand_1  15 GkIdfeEfkellkk 28 
                 G+++ +Ef++l k+
  CCD24729.1 222 GTVNQQEFVSLYKR 235
                 99*******99886 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0045
                 HHHHHTTTSSSEEEHHHHHH CS
   EF-hand_1   5 iFrefDkDgdGkIdfeEfke 24 
                 +  + D +g+ +I+  Ef +
  CCD24729.1 242 VYVDNDINGSCTISSAEFYN 261
                 55566*************76 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0015
                 HHHHHHHHTTTSSS CS
   EF-hand_1   2 lkeiFrefDkDgdG 15 
                 l ++Fr fD D++G
  CCD24729.1 310 LTKVFRNFDSDQNG 323
                 5689*********9 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.041   1.2e+02      31      53 ..     175     197 ..     172     199 .. 0.83
   2 !    6.1   0.0    0.0033        10       3      54 ..     185     235 ..     183     235 .. 0.76
   3 ?   -0.7   0.0      0.44   1.3e+03      36      53 ..     247     264 ..     247     266 .. 0.80
   4 ?    4.1   0.1     0.014        43      31      51 ..     313     335 ..     294     337 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.041
   EF-hand_8  31 lfrefDtdgdGkisfeEFcvlle 53 
                 lf+ +D+ + G+++ eE  +ll+
  CCD24729.1 175 LFNNHDIRKRGRLTAEELQNLLQ 197
                 79999999999999999877765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0033
   EF-hand_8   3 gkItreelrrilrilglkk....glseeevdilfrefDtdgdGkisfeEFcvller 54 
                 g +t eel+       l+      +  + +d+l+++f   + G++++ EF+ l++r
  CCD24729.1 185 GRLTAEELQN-----LLQNddnsRFCISSIDSLINLFGATRFGTVNQQEFVSLYKR 235
                 6777777777.....3333346667777899********************99875 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.44
   EF-hand_8  36 DtdgdGkisfeEFcvlle 53 
                 D++g+ +is  EF++ l+
  CCD24729.1 247 DINGSCTISSAEFYNSLQ 264
                 677788899999999887 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.014
   EF-hand_8  31 lfrefDtdgdGk..isfeEFcvl 51 
                 +fr fD d++G+  +++++F+++
  CCD24729.1 313 VFRNFDSDQNGIaqVHYKDFIEM 335
                 6999*******655999999987 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.009        27      14      25 .]     185     196 ..     185     196 .. 0.91
   2 ?   -2.9   0.0         2   5.9e+03      14      23 ..     222     231 ..     222     233 .. 0.80
   3 ?    2.0   0.0     0.054   1.6e+02       9      23 ..     247     261 ..     247     263 .. 0.86
   4 ?    3.3   0.2     0.021        61       3      14 ..     312     323 ..     310     324 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.009
                 SCE-HHHHHHHH CS
   EF-hand_5  14 GkIskeELktlv 25 
                 G++++eEL++l+
  CCD24729.1 185 GRLTAEELQNLL 196
                 9********975 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2
                 SCE-HHHHHH CS
   EF-hand_5  14 GkIskeELkt 23 
                 G+++ +E+  
  CCD24729.1 222 GTVNQQEFVS 231
                 889999*965 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.054
                 -SS-SSCE-HHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELkt 23 
                 D Ng+ +Is  E+++
  CCD24729.1 247 DINGSCTISSAEFYN 261
                 7888889******97 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.021
                 HHHHHH-SS-SS CS
   EF-hand_5   3 dtFqaiDlNgDG 14 
                 ++F+ +D ++ G
  CCD24729.1 312 KVFRNFDSDQNG 323
                 68********99 PP

>> FAM75  FAM75 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  19.3    0.0013       3.7      60     123 ..      58     118 ..      50     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0013
       FAM75  60 pvqiqakespvLsqaqplplpevqpqpltqtlpqsqplplaqaqtqahlqsslpilppsslpqi 123
                 + q q+++sp+L q qpl++ ++qp p+ q +    plp + +  q ++ s  pi pps  +q+
  CCD24729.1  58 TQQLQQTNSPQLIQRQPLQYRNTQPLPVHQHH---PPLPNHLPLGQPNVRSNRPIPPPSNMSQV 118
                 77999************************999...5666777777889999999*9***99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2625.03
//
Query:       CCD24730.1  [L=512]
Description: hypothetical protein NDAI_0D04160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-85  286.9   3.1    2.9e-85  286.0   3.1    1.5  1  Septin           Septin
    1.9e-05   24.6   0.9    0.00074   19.5   0.1    2.5  2  RsgA_GTPase      RsgA GTPase
    0.00083   18.9   2.0       0.57    9.7   0.2    2.5  2  GTP_EFTU         Elongation factor Tu GTP binding domain
    0.00087   19.7   0.0      0.002   18.5   0.0    1.5  1  AAA_16           AAA ATPase domain
     0.0021   18.1   0.1     0.0059   16.7   0.1    1.8  1  MMR_HSR1         50S ribosome-binding GTPase
     0.0022   17.1   0.1     0.0038   16.3   0.1    1.3  1  T2SSE            Type II/IV secretion system protein
     0.0038   17.5   0.3      0.012   15.8   0.3    2.0  1  AAA_22           AAA domain
      0.005   16.6   0.1     0.0086   15.8   0.1    1.3  1  Sigma54_activat  Sigma-54 interaction domain
     0.0096   15.7   0.0      0.025   14.3   0.0    1.8  1  AAA_24           AAA domain
  ------ inclusion threshold ------
      0.013   14.9   0.1      0.022   14.1   0.1    1.3  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.028   14.9   2.1      0.047   14.2   0.8    1.9  1  ABC_tran         ABC transporter
      0.029   14.6   0.1      0.099   12.9   0.1    1.9  1  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.031   14.3   0.2        1.4    8.9   0.0    2.7  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.036   13.8   0.1      0.081   12.7   0.1    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.043   13.0   4.7       0.23   10.6   0.0    3.2  4  PIF1             PIF1-like helicase
      0.048   12.9   1.3      0.092   12.0   0.0    2.0  2  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.049   13.7   2.3       0.95    9.5   0.2    2.8  3  Dynamin_N        Dynamin family
      0.053   12.8   0.4      0.053   12.8   0.4    2.2  2  AIG1             AIG1 family
      0.092   12.5   0.2         16    5.2   0.0    2.6  2  ATP_bind_1       Conserved hypothetical ATP binding protein
        0.1   12.2   1.0        0.2   11.2   0.1    2.0  1  Ras              Ras family
        0.1   13.0   0.1       0.34   11.3   0.0    2.0  1  AAA              ATPase family associated with various cellul


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.0   3.1   3.4e-88   2.9e-85       1     279 [.      86     357 ..      86     359 .. 0.95

  Alignments for each domain:
  == domain 1  score: 286.0 bits;  conditional E-value: 3.4e-88
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHHH CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylre 99 
                 kg++f+l+v+G+sg+Gkttl+ntlf +++i+++    ++e+ ++   i+kkk++ie d+++lnlt+i+tp +G++ +ns sw p+v+y+deq+++y+ +
  CCD24730.1  86 KGTNFNLLVAGQSGTGKTTLVNTLFGQTIINNQ----ENESLTSCCGISKKKMIIEADDTQLNLTIIETPSYGNKTNNSMSWIPLVNYVDEQIRSYIFQ 180
                 799***************************997....456788899***************************************************** PP

                 CTSS--SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHHHHHH CS
      Septin 100 esklkRkkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakelsekl 198
                 e++ +R++++D+R+H+cly+++P+ ++l++ld+ +mk+ls++vnliPvi K D+l  + lk +K +++ +l++  ++i+++  e ++e   +  +  ++
  CCD24730.1 181 EEQPYREHLQDNRIHCCLYLLEPNLRKLNKLDLITMKELSKRVNLIPVINKVDILNPNMLKDLKIQVKYTLDNRGVSICQFLTEFNNE---NGVEFDDI 276
                 ********************************************************************************55544444...3467899* PP

                 HHC-SEEB-SSSSEEEE.SSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHHHHHHHHHTHHHHHHHHHH-XXXXXX CS
      Septin 199 keslPfaivgsneliek.kgkkvrgRkypWGvvevenekhsdFlkLrklllkthledLkevteellYetyRseklsklkeka 279
                 ++++Pf +++s+++i + +gk v gRky+WG++ev+n++ sdFlkL+++l++ ++ dL ++te+ +Ye +Rse l+++  ka
  CCD24730.1 277 RTQYPFGVISSDKQILNnSGKLVLGRKYKWGIIEVDNSEFSDFLKLKQFLINDYMVDLVKSTES-YYESCRSELLQTRILKA 357
                 ************9998879*******************************************98.9*********9987665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   8.7e-07   0.00074      85     126 ..      76     116 ..      43     151 .. 0.75
   2 ?    3.2   0.1     0.084        72      35      72 ..     211     247 ..     197     275 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8.7e-07
                  TTHTTHHHHHHHCTTSE.EEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  85 ktkegleelkellkdkt.svlvGqSGvGKStLinallpelelk 126
                     ++le+++++   ++  +++GqSG GK+tL+n+l +++ ++
   CCD24730.1  76 P--KQLERITRNKGTNFnLLVAGQSGTGKTTLVNTLFGQTIIN 116
                  3..6777777666665415678**************9986554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.084
                  HHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHH CS
  RsgA_GTPase  35 ldrfLvlaeekgiepvivlnKiDlleeeeeleelkeel 72 
                  ld + +   +k+++++ v+nK+D+l+ +  l++lk ++
   CCD24730.1 211 LDLITMKELSKRVNLIPVINKVDILNPNM-LKDLKIQV 247
                  444444555788999999******99998.55554443 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0016       1.4       4      35 ..      90     121 ..      88     152 .. 0.81
   2 !    9.7   0.2   0.00066      0.57     120     172 ..     220     284 ..     212     380 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0016
                 EEEEEEESTTSSHHHHHHHHHHHTTSSCHHHH CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrLlyktgaiskkge 35 
                  n+ ++g   +GKtTL+ +L  +t + ++++e
  CCD24730.1  90 FNLLVAGQSGTGKTTLVNTLFGQTIINNQENE 121
                 6999****************987777666443 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00066
                 HTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHH.......................HHHHHHHHHTTTTTEEEEE CS
    GTP_EFTU 120 kegvpiivfiNKmDrl.kaelkeiveevkqklsrk.......................eeklekygekgekevpvvf 172
                 +++v++i +iNK+D l  + lk ++ +vk++l+++                       +            ++p+  
  CCD24730.1 220 SKRVNLIPVINKVDILnPNMLKDLKIQVKYTLDNRgvsicqfltefnnengvefddirT------------QYPFGV 284
                 67999***********6667788899999999776666665555555433333333330............333333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.4e-06     0.002      21      45 ..      86     110 ..      72     131 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.4e-06
      AAA_16  21 sgrpelvllsGesGvGKsslvrell 45 
                 +g+  ++l+ G+sG+GK++lv++l+
  CCD24730.1  86 KGTNFNLLVAGQSGTGKTTLVNTLF 110
                 3333789***************998 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   6.9e-06    0.0059       3      93 ..      93     211 ..      91     231 .. 0.46

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 6.9e-06
                 EEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEE........ETTEEEEEEECGGC..........SSHHHHHHH...............HHH CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvk........lkgkeielvDtpGl..........iegaseekg...............lgk 68 
                 +++G++ +GK+tL+n+l+g++ i++++    ++   g  k          + +++++ tp            i                       +++
  CCD24730.1  93 LVAGQSGTGKTTLVNTLFGQT-IINNQENESLTSCCGISKkkmiieadDTQLNLTIIETPSYgnktnnsmswI-------PlvnyvdeqirsyifqEEQ 183
                 799***************973.333333333333333322122222213346689999999333333333330.......0333333333333333444 PP

                 HHHHHHC...TSEEEEEEETTTTCSHHH CS
    MMR_HSR1  69 aflalee...adlillvvdaseeklkpl 93 
                  ++++ +    +  l++++ + +kl++l
  CCD24730.1 184 PYREHLQdnrIHCCLYLLEPNLRKLNKL 211
                 4444443222566666666443344333 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   4.4e-06    0.0038     106     152 ..      57     112 ..      28     124 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 4.4e-06
       T2SSE 106 ddlgaeealk..........ekiaevlrkavrerglilvsGgTgsGKttllyallke 152
                 +d+++++ +           ++++++ r+   ++ ++lv+G  g+GKttl+++l  +
  CCD24730.1  57 KDYVYQKIMPgyhvgidnipKQLERITRNK-GTNFNLLVAGQSGTGKTTLVNTLFGQ 112
                 455555555566666666657777777777.8999*****************99753 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.3   1.4e-05     0.012       8      67 ..      92     173 ..      85     262 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.4e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee................erpevv...fvtlpsst..sskdl.lrellralgle 67 
                 l+v G+sGtGKTtl+++l+ q  + ++ +e                ++++++    ++ ps +  +  ++ +  l++ ++++
  CCD24730.1  92 LLVAGQSGTGKTTLVNTLFGQTIINNQENEsltsccgiskkkmiieADDTQLnltIIETPSYGnkTNNSMsWIPLVNYVDEQ 173
                 7999***************997544444437777777776666666444444555555555555544444444445555544 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1     1e-05    0.0086       9      59 ..      76     128 ..      70     139 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1e-05
                      HHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHS..TTTTS-EEEEETT CS
  Sigma54_activat   9 kelleqikkvaktdlsvlitGesGtGKellaraiheas..krkekpfvavnca 59 
                       ++le+i++   t+ ++l+ G+sGtGK++l ++++ ++  +++e++ ++  c+
       CCD24730.1  76 PKQLERITRNKGTNFNLLVAGQSGTGKTTLVNTLFGQTiiNNQENESLTSCCG 128
                      56778888888999*******************99854113333334444444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     3e-05     0.025       3      33 ..      90     120 ..      88     187 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3e-05
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtek 33 
                  ++l+ G+sg+GKTtl+++l  ++++ + e+
  CCD24730.1  90 FNLLVAGQSGTGKTTLVNTLFGQTIINNQEN 120
                 5789***************966666666665 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.6e-05     0.022      40      59 ..      90     109 ..      67     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.6e-05
                   .SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  40 shllvaGatgsGKStalntL 59 
                    +llvaG +g+GK+t +ntL
    CCD24730.1  90 FNLLVAGQSGTGKTTLVNTL 109
                   59*****************9 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.8   5.5e-05     0.047      15      40 ..      93     118 ..      82     181 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.5e-05
                 EEEESTTSSHHHHHHHHTTSS--SEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpteG 40 
                  + G++G+GK+tL+++l g++  ++ 
  CCD24730.1  93 LVAGQSGTGKTTLVNTLFGQTIINNQ 118
                 578****************9875333 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   0.00012     0.099       2      41 ..      92     134 ..      91     151 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00012
                 EEEESSTTSSHHHHHHCHCT-CC...C-EEETTTTEEEEEEEC CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkf...sekekstigvdfltkev 41 
                 +++ G+sg+GKt+l++ +  +++   +e+e+ t  + +++k++
  CCD24730.1  92 LLVAGQSGTGKTTLVNTLFGQTIinnQENESLTSCCGISKKKM 134
                 6789*************99998843223334454444545544 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0017       1.4      18      45 ..      83     115 ..      71     125 .. 0.67
   2 ?    2.4   0.0      0.17   1.4e+02      46     117 ..     171     248 ..     156     256 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0017
                 H.....TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  18 l.....gdvilLeGdLGaGKTtlvrglakalgv 45 
                 +     +  +l  G+ G+GKTtlv  l  +  +
  CCD24730.1  83 TrnkgtNFNLLVAGQSGTGKTTLVNTLFGQTII 115
                 232222234999************998876655 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.17
                 -.----TTTTSEEEEEE..SS.EEEEE-TT-S.STHHHHHCTTCCCCS.TSCEEEEETGGGGCCCS-S..-CEEEEEE CS
        TsaE  46 e.evkSPTFtlveeYelekeg.lyHfDlYRle.deeeleelgleeyle.eeavvlvEWpekleellpe..edleiele 117
                 + +++S  F+  ++Y+++ ++  +H+ lY le + ++l++l+l ++ e ++ v l+   +k++ l p+  +dl+i+++
  CCD24730.1 171 DeQIRSYIFQEEQPYREHLQDnRIHCCLYLLEpNLRKLNKLDLITMKElSKRVNLIPVINKVDILNPNmlKDLKIQVK 248
                 35788888888999988777689*******963455566666655554445677777777754443433355566554 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   9.4e-05     0.081      23      40 ..      89     107 ..      78     118 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.4e-05
      AAA_29  23 g.atlltGpsGsGKSTllD 40 
                 + + l++G+sG+GK+Tl+ 
  CCD24730.1  89 NfNLLVAGQSGTGKTTLVN 107
                 25789************94 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00026      0.23      15      62 ..      80     130 ..      73     141 .. 0.76
   2 ?    1.2   0.1      0.19   1.6e+02     263     294 ..     218     249 ..     205     274 .. 0.82
   3 ?    0.9   0.0      0.24     2e+02     280     300 ..     327     347 ..     323     385 .. 0.79
   4 ?   -3.9   0.1       6.6   5.6e+03      91     117 ..     447     473 ..     435     491 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00026
                 .....HCTS-E..EEEESTTSSCHHHHHHHHH.HCHCTCCCEEEEESSHHH CS
        PIF1  15 eavlnekgklf..FvtGsgGtgKtflwkallk.klrsegkivlavAssGvA 62 
                 e+++++kg +f   v G++GtgKt l ++l   ++ +++++   +  +G+ 
  CCD24730.1  80 ERITRNKGTNFnlLVAGQSGTGKTTLVNTLFGqTIINNQENESLTSCCGIS 130
                 7778888887633799*************9851456666776777777875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.19
                 .....EEEESSCCHHHHHHHHHHCCSSS--EE CS
        PIF1 263 yleerailcptnedvdeiNnyvlsklpgeeke 294
                  l++r+ l+p  ++vd +N ++l+ l+ ++k 
  CCD24730.1 218 ELSKRVNLIPVINKVDILNPNMLKDLKIQVKY 249
                 4899**********************998875 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.24
                 HHHHHHCCSSS--EEEE-EEE CS
        PIF1 280 iNnyvlsklpgeekeylssDs 300
                 iN+y+++ +++ e  y+s+ s
  CCD24730.1 327 INDYMVDLVKSTESYYESCRS 347
                 9*****************976 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 6.6
                 HTSCCCHHHHHC-SEEEEECGGGSBHH CS
        PIF1  91 krgsklaellkktsliiwDEapmvere 117
                 k+  k a+ lkk + ++  E+  + ++
  CCD24730.1 447 KKFFKWAQALKKKQTVLNKEITTMAKQ 473
                 444456666666666666666666554 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011     0.092       4      31 ..      92     119 ..      90     149 .. 0.81
   2 ?   -1.4   0.3       1.2     1e+03      25      76 ..     397     447 ..     389     475 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
     DUF2075   4 vlVtGvaGtGKtvvllnllael..eddeee 31 
                 +lV G++GtGKt + ++l+ +   +  ++e
  CCD24730.1  92 LLVAGQSGTGKTTLVNTLFGQTiiN--NQE 119
                 69******************99431..222 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.2
     DUF2075  25 leddeeertavylsvNhplvlvlrealakkeekkkkkeaf.eklssfinnlse 76 
                 +e++++++++ y + N++l+++++ + + +   ++++  f +k++++in  ++
  CCD24730.1 397 IENNKLKNYKCYEIFNKKLMDKIYIDWSPEF--MERQFLFkKKFNEIINLEEK 447
                 4677888888888999999999998887777..33333331334445554443 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2    0.0011      0.95       2      29 ..      93     120 ..      92     133 .. 0.85
   2 ?    1.5   0.1      0.32   2.7e+02      71     120 ..     114     183 ..     112     232 .. 0.66
   3 ?    2.4   0.0      0.17   1.4e+02      56     110 ..     439     494 ..     424     507 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0011
                 EEEEBTTTTHHHHHHHHHTS--S---SS CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpn 29 
                 +v G+   GK++++n L g+ i  +++n
  CCD24730.1  93 LVAGQSGTGKTTLVNTLFGQTIINNQEN 120
                 799******************9887766 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.32
                 HHHHHHHHHHTSSSS--SS-EEEEEEETTS-SEEEEE---B-SSSGTTS.....................H CS
   Dynamin_N  71 eieketekiagankgiskkvillkilsllvkgltlvDlPGldsvnkrdq.....................e 120
                  i+++++++ +++ giskk ++++  + ++ +lt++ +P + +  ++ +                     +
  CCD24730.1 114 IINNQENESLTSCCGISKKKMIIEADD-TQLNLTIIETPSYGNKTNNSMswiplvnyvdeqirsyifqeeQ 183
                 567777777788999999988888755.789999****987776666556788887777444444444444 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.17
                 EEE.T-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETTS-SEEEEE--- CS
   Dynamin_N  56 kek.ekkledfsevreeieketekiagankgiskkvillkilsllvkgltlvDlPG 110
                 +e  + ++++f + +++++k++  ++++  ++ k+v+ l+    + ++++lvD  G
  CCD24730.1 439 NEIiNLEEKKFFKWAQALKKKQTVLNKEITTMAKQVEFLEGECRNLERMVLVDKKG 494
                 444677888899999999999999999999***********************765 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   6.2e-05     0.053       2      58 ..      91     152 ..      90     164 .. 0.72
   2 ?   -1.4   1.2       1.4   1.2e+03     109     197 ..     409     501 ..     392     506 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.2e-05
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEE......EETTEEEEEEE--S CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksr......twdgkkinViDTPg 58 
                 ++++ G++g+Gk + +N++ g+++ + + +++s+t+ c  +++         + ++ +i+TP+
  CCD24730.1  91 NLLVAGQSGTGKTTLVNTLFGQTIINNQ-ENESLTSCCGISKKkmiieaDDTQLNLTIIETPS 152
                 799****************999998777.6777777774433321220033446778999997 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.4
                 HHHCGGGGGGEEE....EEEEGGGGTTCCHHHHHHHHH-HHHHHHHHHTTTSEEEEETTHHHHHHHHHHHHHHHHHHHHHH.HHTTTT--B-HH CS
        AIG1 109 elFGekilkyliv....vftrkddleddsledylsksspeaLkevlkecgnRvvlfnnktaskeekeeQvkellelveaiv.kenggkpytnel 197
                 e+F +k ++++ +     f + + l ++++++ ++ ++ +++ +  ++++++  ++n + ++ +++ e ++   +  e++v   ++g  y+n++
  CCD24730.1 409 EIFNKKLMDKIYIdwspEFMERQFLFKKKFNEIINLEEKKFF-KWAQALKKKQTVLNKEITTMAKQVEFLEGECRNLERMVlVDKKGGFYSNNS 501
                 567777777666633334788888899999999997776655.556668888888888877777777776666666665541455566777665 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.018        16       1      16 [.      94     109 ..      94     122 .. 0.88
   2 ?    4.7   0.0     0.026        22     101     182 ..     173     252 ..     173     287 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.018
  ATP_bind_1   1 vvGpaGsGKttfvgal 16 
                 v+G  G GKtt+v++l
  CCD24730.1  94 VAGQSGTGKTTLVNTL 109
                 89***********987 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.026
  ATP_bind_1 101 QielfthseslakiveeLesefalvvvyLvDsqrltd.ptkfisgllsalsamlrlelPhvvvlnkfDllkek....lekeleffed 182
                 Qi+ + + e+     e+L+ +   +++yL++++  +    ++i +        l+ ++  + v+nk+D+l+ +    l+ ++++  d
  CCD24730.1 173 QIRSYIFQEEQP-YREHLQDNRIHCCLYLLEPNLRKLnKLDLITM------KELSKRVNLIPVINKVDILNPNmlkdLKIQVKYTLD 252
                 777777777777.77999999999999999998766447888877......667788999*********996654444444444443 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00024       0.2       2      55 ..      92     150 ..      91     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00024
                 EEEEESTTSSHHHHHHHH.....HHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEE CS
         Ras   2 lvlvGdsavGKtslllrf.....vkdkFkeeyesTigvdfytkeievdgkevkleiwDT 55 
                 l++ G+s++GKt+l++       ++++ +e+ +s  g+ +++  ie+d+++++l+i  T
  CCD24730.1  92 LLVAGQSGTGKTTLVNTLfgqtiINNQENESLTSCCGISKKKMIIEADDTQLNLTIIET 150
                 6789***********875233335677778888999999****************9988 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0004      0.34       1      22 [.      92     113 ..      92     173 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0004
                 EEEESSTTSSHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakel 22 
                 +l+ G  GtGKT+l++ +  ++
  CCD24730.1  92 LLVAGQSGTGKTTLVNTLFGQT 113
                 5899************999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1175  (0.0655363); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 3509.20
//
Query:       CCD24731.1  [L=308]
Description: hypothetical protein NDAI_0D04170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-25   88.6  20.3    4.4e-25   88.6  20.3    2.0  2  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.3     0.054   9.6e+02      43      78 ..      37      76 ..      29     121 .. 0.63
   2 !   88.6  20.3   2.4e-29   4.4e-25       2     133 .]     146     282 ..     145     282 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.054
  FA_hydroxylase 43 aalrahplealllallllllllllgplsalll....vlvl 78
                     ++ a++  ++  ++l++ l+++l +  ++++    ++++
      CCD24731.1 37 EKYWAAWYTYMNNDILATGLMFFLLHEFVYFFrclpWFII 76
                    5555555555555555555555555555555543334444 PP

  == domain 2  score: 88.6 bits;  conditional E-value: 2.4e-29
  FA_hydroxylase   2 llallledfveYwvHrllHrvkllwrrlHkvHHsseaptalaalrahpleallla.llllllllllg.....plsalllvlvlaallelliHsgl 90 
                     +l+++led+++Yw Hrl+H   ++++ +Hk+HH++ ap  l+a++ahp+e+++l+  ++ +++l++      +l +l ++++l+ ++++  Hsg 
      CCD24731.1 146 MLFFVLEDMWHYWGHRLFHY-GVFYKYIHKQHHRYAAPFGLSAEYAHPVETMTLGfGTVGMPILYVMytgqlHLFTLCIWITLRLFQAVDSHSG- 238
                     799****************6.57********************************666666665554557555555555***************. PP

  FA_hydroxylase  91 hvslgwll....erllatpraHrlHHskneegnfgvllslwDrlfgT 133
                      +++++ l    ++  a++++H+lHH+++  gn+++++++wD ++ T
      CCD24731.1 239 -YDFPFSLnkfmPF-WAGAEHHDLHHHYFI-GNYASSFRWWDFCLDT 282
                     .4444444324244.69*************.***********99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2253.63
//
Query:       CCD24732.1  [L=1355]
Description: hypothetical protein NDAI_0D04180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.6e-100  334.0   0.1     7e-100  333.4   0.1    1.3  1  GATase_5        CobB/CobQ-like glutamine amidotransferase dom
    1.5e-40  138.9   0.1    8.4e-28   97.5   0.0    2.3  2  AIRS_C          AIR synthase related protein, C-terminal doma
    4.7e-25   87.8   0.0    8.7e-25   87.0   0.0    1.5  1  FGAR-AT_N       Formylglycinamide ribonucleotide amidotransfe
    7.8e-23   80.8   0.0    2.7e-22   79.0   0.0    2.0  1  FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransfe


Domain annotation for each model (and alignments):
>> GATase_5  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.4   0.1  1.6e-103    7e-100       1     260 []    1087    1354 ..    1087    1354 .. 0.95

  Alignments for each domain:
  == domain 1  score: 333.4 bits;  conditional E-value: 1.6e-103
    GATase_5    1 kpkvailreeGvngeyemaaafekaGfeavdvhmsdllegrvslddfqilalpGGfsygDelgsgkgwakslllneklrealekfl.nredtlaLGi 96  
                  +pkvailre+Gvng++ema++fe+aGf+ vdv+msdl++gr +ld+f +la++GGfsygD+lg+g+gwaks+l++e +r+++ kf+ +r+dt+a+G 
  CCD24732.1 1087 RPKVAILREQGVNGQMEMAWCFEQAGFTSVDVTMSDLIDGRFHLDEFVGLAACGGFSYGDVLGAGAGWAKSVLFHEGVRSQFVKFFqERQDTFAFGA 1183
                  79************************************************************************************6689******* PP

    GATase_5   97 CnGfqlLvklg.lvpggeieeaeksptltrNksgrfesrlvsv.v.....vsekspsvflkgmeglslp..vahGeGrfvfkseevlkeleangqva 184 
                  CnG+q+L++l+ ++pg      e++p ++rN s+++e+r+++v +       +k++ vfl+gm g++lp  vahGeG++ f+++++l+++e+ng++a
  CCD24732.1 1184 CNGCQFLSRLKeIIPG-----CENWPIFERNVSEQYEARVCMVeIlntinEGKKQENVFLNGMVGSKLPiaVAHGEGKATFTNNKQLEQFENNGLCA 1275
                  ****************.....8*********************4433322234689*************99************************** PP

    GATase_5  185 lrYvdeegkpteeyplNPNgSpegiagitspdGRvlalmpHpervveavqksiipe...eeeeevspwlrlFenavkyv 260 
                  +rY+d++ ++te++p+NPNgS +giagi+sp+GRvla+mpHperv++  ++s++p+   +e+e+++pw+rlF++a+k+v
  CCD24732.1 1276 IRYIDNYDNVTEKFPFNPNGSANGIAGIMSPNGRVLAMMPHPERVCRLEANSWYPAgkyDEWEGYGPWIRLFRSARKWV 1354
                  *******************************************************9655566669*************7 PP

>> AIRS_C  AIR synthase related protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   1.9e-31   8.4e-28       2     153 ..     473     629 ..     472     632 .. 0.95
   2 !   39.2   0.0   1.6e-13   7.2e-10      12     137 ..     880     994 ..     866    1005 .. 0.81

  Alignments for each domain:
  == domain 1  score: 97.5 bits;  conditional E-value: 1.9e-31
                 TTEEEEEEET....SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHH..HTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTH CS
      AIRS_C   2 pGdvliltgs....lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaal..kglvkaahDvTgGGLlgalaemapasgvgaeidldkv 94 
                  G +li++g+    +Glgg + s++  +  +++ld  +vq+g++++e+++++v +a+ al  ++++ ++hDv++GGL++al+e+++++++ga++d+ kv
  CCD24732.1 473 SGSCLIVLGGesmlIGLGGGAASSISSGEGSADLDFASVQRGNPEMERRCQQVIDACVALgdSNPIQSIHDVGAGGLSNALPELVHDNDLGAKFDIRKV 571
                 5999*****************9998888888888777************************************************************** PP

                 HHHHHHHHHHHHHHCSTTTEEEEEEEHGGHHHHHHHHHHTTCCCEEEEEEEEESSSEEE CS
      AIRS_C  95 pifdelesplemllsensGrllvavppeeadavlaileeeglpeaavIGevtakeelsv 153
                   +d+ +sp+e+++ e+++r+++ v+ ++   + +i+++e+ p +a +G++ta+++l v
  CCD24732.1 572 LSLDPGMSPMEIWCNESQERYVLGVSVNDYPIFEKICQRERAP-YALVGHATAEQKLIV 629
                 *****************************************97.**********98766 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 1.6e-13
                 SSCTCCHHHHHHHCHHHCTSHTTTSEHHHHHHHHHHHHHHHHHHHHHTTECEEEE--TTHHHHHHHHHHHTTTEEEEEECGTHHHHHHHHHHHHHHHCS CS
      AIRS_C  12 lGlggagtslkrkileeeglddsavqlgdvlleptliyvkralaalkglvkaahDvTgGGLlgalaemapasgvgaeidldkvpifdelesplemllse 110
                 + lgg++ +l++     ++ +     + d  l++  ++  ++l +  + v a hD ++GGLl++l ema+ s++g++i+       ++    + +l  +
  CCD24732.1 880 HSLGGSA-LLQVYNEVGNTSP----TVHDNGLLKSFLESLLELHQT-DIVLAYHDRSDGGLLVTLLEMAFTSRCGLNINTT--ATDKN----AILLSLF 966
                 6789999.4545455555555....59999***************6.*********************************9..44443....4677779 PP

                 TTTEEEEEEEHGGH.HHHHHHHHHTTCC CS
      AIRS_C 111 nsGrllvavppeea.davlaileeeglp 137
                 n++ + ++ ++e++ d++++il++ g+p
  CCD24732.1 967 NEELGSIFQVAESKlDEFKKILTRNGIP 994
                 999999999999999**********994 PP

>> FGAR-AT_N  Formylglycinamide ribonucleotide amidotransferase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0   1.9e-28   8.7e-25       2     109 ..      41     176 ..      40     183 .. 0.85

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 1.9e-28
   FGAR-AT_N   2 yvhfvel...eeelseeeravleqlLeygdkleeeeeege.....................lllVvPRlGtiSpWsSkAtdIahncgle.kvkRiErgi 75 
                 y+h+ve+   +++ls  + + l++lL+y+++l+  +++++                     l+ +vPR GtiSpWsSkAt+Iah+cgl+ +++RiErg+
  CCD24732.1  41 YIHYVETkdsDKDLSPGKYELLQTLLKYDSELDIINDSSSkqlfdlvakdipgstlgqdtyLIRIVPRSGTISPWSSKATNIAHVCGLAhDITRIERGL 139
                 89***987778999****************95544433333468888888888889999999***************************9********* PP

   FGAR-AT_N  76 ayvlel.k..elseeelaalaalLhDrmtesvleele 109
                 a  +++    +l e+ +++  + ++D+mt+ ++ +++
  CCD24732.1 140 ALLIKTvPnfPLLENLNDTSLKSVFDKMTQQLYLQEP 176
                 *****9625689999999999********99876554 PP

>> FGAR-AT_linker  Formylglycinamide ribonucleotide amidotransferase linker domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0     6e-26   2.7e-22       1      50 []     208     258 ..     208     258 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 6e-26
  FGAR-AT_linker   1 LeeankelglaLsdeEidylqeaf.eklgrnPtdvElemfaqvwSEHCrHK 50 
                     L++an++lglaL+d E+dyl +af e ++r+PtdvEl+mfaqv+SEHCrHK
      CCD24732.1 208 LQKANRNLGLALDDGEMDYLINAFkEIIHRDPTDVELFMFAQVNSEHCRHK 258
                     89**********************8789**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.84u 0.26s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 8978.97
//
Query:       CCD24733.1  [L=87]
Description: hypothetical protein NDAI_0D04190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-16   58.9  13.5    8.2e-16   58.5  13.5    1.2  1  DUF2462   Protein of unknown function (DUF2462)
  ------ inclusion threshold ------
       0.14   11.7   1.7       0.15   11.6   1.7    1.0  1  ECH_2     Enoyl-CoA hydratase/isomerase


Domain annotation for each model (and alignments):
>> DUF2462  Protein of unknown function (DUF2462)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5  13.5   9.2e-20   8.2e-16       1      77 []       1      75 [.       1      75 [. 0.98

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 9.2e-20
     DUF2462  1 MaQGklKkkkkkk.sakakkkaknpkkg.arviaPKkaklvkqqklkkklsaglnkktEkelasrAgsskLellkggkk 77
                M+Q++lK++kk+k +++ +kk+kn +k+ + + ++Kk++l++ +kl+k  sa+l+++tEk++asr+g  +Lellkg++k
  CCD24733.1  1 MVQKALKVTKKSKdPRRITKKQKNLRKAaPLQLKSKKKSLQHLKKLNK--SASLTETTEKLIASRVG--HLELLKGTRK 75
                **********9999**************9*******************..*****************..*******986 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.7   1.6e-05      0.15     236     314 ..       4      83 ..       1      86 [. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.6e-05
                 HHHH..T..--SHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTTS---- CS
       ECH_2 236 eaLek.aeaeedewakktletlkkrsPtslkvtleqlrrgrklsslaevlrmElrlalrllaekDfveGvrallvdkdkk 314
                 +aL+  +++++ + ++k +++l+k++P+ lk   ++l++ +kl++ a+  ++  +l+++ + + ++ +G r+ +  k++k
  CCD24733.1   4 KALKVtKKSKDPRRITKKQKNLRKAAPLQLKSKKKSLQHLKKLNKSASLTETTEKLIASRVGHLELLKGTRKEIERKNRK 83 
                 5666544445566899999************************98888877777777777779********999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1570  (0.0875676); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 661.13
//
Query:       CCD24734.1  [L=321]
Description: hypothetical protein NDAI_0D04200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-10   39.2   9.8      8e-10   38.9   1.7    2.3  2  60KD_IMP  60Kd inner membrane protein


Domain annotation for each model (and alignments):
>> 60KD_IMP  60Kd inner membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   1.4    0.0012        22       2      40 ..      61     100 ..      60     132 .. 0.71
   2 !   38.9   1.7   4.5e-14     8e-10      49     165 ..     152     314 ..     138     315 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0012
    60KD_IMP   2 glaIilltiivr.lillpltlkqlkssakmqelqPelkei 40 
                  + + ++t+++r l++lpl++ q k   k qel++ +++ 
  CCD24734.1  61 LFMVPMMTLTLRsLVTLPLSIWQRKRIVKQQELRKIVQAT 100
                 56667899999956789***************99888763 PP

  == domain 2  score: 38.9 bits;  conditional E-value: 4.5e-14
    60KD_IMP  49 qklqqemmklYkkegvnplaGclplLiqlpifialyrvlrsla.............sf.w.ikdLsapd......lpillavttflqqklsksk..... 121
                 ++  + + kl+kk++v  ++ ++  L+q+p+++ +   +r+l              +f + + dLs p       +pi+l+++ +l+ +++ ++     
  CCD24734.1 152 KETRKRQKKLFKKYNVPLWKNVVLPLVQIPLWVTISMGIRNLVdrrffevgeqwakDFdIdGIDLSGPLdplpmlVPIVLGTFSLLNVEFNGKMmlnkd 250
                 55778899*********************************8888766555443332242244555544898888888888888888555522122234 PP

    60KD_IMP 122 ..................kmqkmmlyv..mplmilffslsfpaglvlYwlvsnllsiaqqliin 165
                                    m ++m++     ++++ +s + ++ l+lYw+ s+++s++q++i+ 
  CCD24734.1 251 tnlvgiktytdesttlaqSMRSIMNVSrmGCIFMMGVSSQTSILLALYWISSQFFSLVQNMILD 314
                 4555555666666666653344444431033444445556777899**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2323.60
//
Query:       CCD24735.1  [L=95]
Description: hypothetical protein NDAI_0D04210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-24   85.7   0.0      2e-24   85.4   0.0    1.1  1  Spt4      Spt4/RpoE2 zinc finger


Domain annotation for each model (and alignments):
>> Spt4  Spt4/RpoE2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.0   1.1e-28     2e-24       5      77 .]       1      72 [.       1      72 [. 0.94

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 1.1e-28
        Spt4  5 llCklvktedqFeeegCpnC.eilelkgdkekvsectseefeGlvaildpekSwvAkwqrldkkvpglYAlkve 77
                +lC++v+t+++F+++gCpnC  i+e  ++   + ects++feGlv +++p kSwvAkw+++d ++pg+YA+kv+
  CCD24735.1  1 MLCGIVQTTNEFNTNGCPNCqGIFE--EAGVGTMECTSPSFEGLVGMCKPGKSWVAKWLSVDPYIPGMYAIKVD 72
                68******************66665..889999***************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 732.94
//
Query:       CCD24736.1  [L=616]
Description: hypothetical protein NDAI_0D04220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-18   64.3  17.2      9e-18   64.3  17.2    1.9  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3  17.2     5e-22     9e-18      14     337 ..     168     515 ..     154     532 .. 0.72
   2 ?    0.6   0.0     0.012   2.1e+02     153     185 ..     551     583 ..     540     602 .. 0.73

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 5e-22
       MFS_1  14 ilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllf.asslwlllvlrvlqGlgagalfpagaalia 111
                 +++ a+ + ++edl++ +  +    t+  +ga+v++lp+++l  ++ +  +l ++ l++  + +++++ a sl  l + r++  ++++a++p++++++ 
  CCD24736.1 168 NYTNAYVSNMKEDLHMKGNDYIHTSTISNVGAIVFQLPFMYLLPKYPAHIILPMMDLGWTWF-TFACYrAKSLSELQAYRFILNAFGAAYYPVSQYILG 265
                 455555559*************************************9999************.666652466669************************ PP

       MFS_1 112 dwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivslla.fvlfllll............peepperkrkspkeee.. 188
                  w++++e ++ + l+  g  lG +   ll + +  sl+       Wr++f+i ai+  l  ++l+++++            ++e+ + +r++ k+    
  CCD24736.1 266 CWYAPDELTSRVFLFFCGQLLGGVTSGLLQARIFKSLNgvnglagWRWMFLIDAIAISLPtAILGFFVIpgipskcyslflTDEEIRIARVRNKRNQik 364
                 *******************************88866666888888*******99865555155655555888888888877444444444443333344 PP

       MFS_1 189 ......kgtgpaplvp.....awkallkdpvlw.illialllfffgfsglltllplylqevlgls..glllaglllallalvgailallagrlsdrlgr 273
                       k        +     +wk+++  p +w +l++  +++   +++++   +l+l++  ++s    + ++  + l+a++g++  +++++ +d +  
  CCD24736.1 365 dgidssKLI------SlfkwdLWKKVFFTPTFWvLLIFDTCSWN-NMTAFSGSYTLWLKSNTKYSieQ-VNNL--SVLPACLGFAYVFVCAAGADLFHC 453
                 223333333......3566667********99965555555554.77777777777788888888533.5555..888888888888888888898777 PP

       MFS_1 274 rrrlllallllllaalglallavtssavllllvlvliGfglgfv.fpsllalasdlappeeagta 337
                 +++ +++ +++ ++++gl++   +  + + ++  +++++ ++++ +p+l+++++d++  + + +a
  CCD24736.1 454 KWIFMVFAAIMNCISCGLLIKWDI-PSNAKWF--AFLTTYFSVApSPCLWSFINDFLRFDPQVKA 515
                 555555555555555555443333.2333332..3333333333378888888888755544444 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.012
       MFS_1 153 vfyilaivsllafvlfllllpeepperkrkspk 185
                 v +i+++++  +  ++l ++  ++++++  +++
  CCD24736.1 551 VCLIFGAIYGAWTFVVLYFYKKNERKHALGNGI 583
                 456777777777777777888888777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4226.49
//
Query:       CCD24737.1  [L=130]
Description: hypothetical protein NDAI_0D04230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-24   86.6   0.2    2.2e-24   85.8   0.2    1.3  1  Ribosomal_S8  Ribosomal protein S8


Domain annotation for each model (and alignments):
>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.2   1.2e-28   2.2e-24       3     127 .]       7     130 .]       5     130 .] 0.85

  Alignments for each domain:
  == domain 1  score: 85.8 bits;  conditional E-value: 1.2e-28
                   HHHHHHHHHHHHHTT-SEEEE.E--HHHHHHHHHHHHCTSEEEEEEE.CCCCCCEEEEE-BSSS-SBSSS.....EEEE-SBTTC--EE-CCC---C CS
  Ribosomal_S8   3 iadmltrirNaekakkeevev.pasklkeeilkvLkeeGyikdfeve.eekkkkikielkynkkkksvik.....klkrvskpgrrvYakvkelpkv 92 
                   +ad+l++i+Naek++k++v + p+sk++ + l+v++++Gyi +fe+  ++++ ki i+l+ + +k++vi+     k+++++k   +       lp  
    CCD24737.1   7 LADALNAINNAEKTGKRQVMIrPSSKVIIKFLQVMQKHGYIGEFEYIdDHRSGKIVIQLNGRLNKCGVISprfnvKINDIEKWTAN------LLP-- 95 
                   8*********************************************9666667777777666667*****7666666666664444......333.. PP

                   GGGTSEEEEEETTEEEEHHHHHHCT--EEEEEEEE CS
  Ribosomal_S8  93 lnglGiaivsTskGvmtdkeArkkkvGGevlayvw 127
                    + +G +i++Ts+G+m ++eAr+k+v G++l +v+
    CCD24737.1  96 ARQFGFVILTTSAGIMDHEEARRKHVSGKILGFVY 130
                   456*******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1008.10
//
Query:       CCD24738.1  [L=1169]
Description: hypothetical protein NDAI_0D04240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-05   23.1   1.8      7e-05   23.1   1.8    3.5  3  zf-H2C2_2     Zinc-finger double domain
     0.0002   21.6  11.6      0.049   14.1   1.9    3.2  2  zf-C2H2       Zinc finger, C2H2 type
  ------ inclusion threshold ------
      0.011   16.5  11.1       0.61   11.1   2.4    3.1  2  zf-C2H2_4     C2H2-type zinc finger
      0.057   13.2   0.4        1.8    8.4   0.1    2.7  2  DUF3989       Protein of unknown function (DUF3989)
        1.1    9.7   6.3        1.4    9.3   1.8    2.9  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding


Domain annotation for each model (and alignments):
>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.4    0.0061        22      15      25 ..      87      97 ..      80      98 .. 0.84
   2 !   23.1   1.8   1.9e-08     7e-05       4      25 ..     104     125 ..     103     126 .. 0.95
   3 ?   -3.5   0.3         5   1.8e+04       4      10 ..     132     139 ..     132     141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0061
   zf-H2C2_2 15 yeCplCdkaFk 25
                + C++C+kaF+
  CCD24738.1 87 FICSFCAKAFS 97
                56********8 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1.9e-08
   zf-H2C2_2   4 rHirkHtgekpyeCplCdkaFk 25 
                 rH r+Htg kpy+C lCd +F+
  CCD24738.1 104 RHERSHTGFKPYKCLLCDHSFV 125
                 9********************8 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5
   zf-H2C2_2   4 rHirk.Ht 10 
                 rH+++ H+
  CCD24738.1 132 RHLKTvHK 139
                 8***7475 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   2.5   0.00011      0.39       1      23 []      87     109 ..      87     109 .. 0.97
   2 !   14.1   1.9   1.4e-05     0.049       1      23 []     115     138 ..     115     138 .. 0.98

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00011
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 + C+ C k F+r+++  rH r+H
  CCD24738.1  87 FICSFCAKAFSRSEHKIRHERSH 109
                 78*******************99 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.4e-05
                 EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt.H 23 
                 ykC  C+ sF r+++  rH++t H
  CCD24738.1 115 YKCLLCDHSFVRSDLTIRHLKTvH 138
                 9*********************99 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.4   0.00017      0.61       1      23 [.      87     109 ..      87     110 .. 0.94
   2 ?    9.2   1.6   0.00067       2.4       1      24 []     115     138 ..     115     138 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f+C++C k Fs++++  rH ++h
  CCD24738.1  87 FICSFCAKAFSRSEHKIRHERSH 109
                 89*********99999*****99 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00067
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkthH 24 
                 +kC +C+ sF +++   rHlkt+H
  CCD24738.1 115 YKCLLCDHSFVRSDLTIRHLKTVH 138
                 89********77777799*****9 PP

>> DUF3989  Protein of unknown function (DUF3989)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1   0.00049       1.8      38      79 ..     158     200 ..     156     208 .. 0.78
   2 ?    1.7   0.0     0.059   2.1e+02      61      82 ..     319     340 ..     301     344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00049
     DUF3989  38 fallslYmtvssiydigredger.lqieHirrlelpvqiekdt 79 
                 f+  s+ ++++s+ +i  +d+++  +i+Hi   +l+ + + + 
  CCD24738.1 158 FSQTSIETIIRSLIKIDHSDKNSnSNIKHISDKNLKIKTNSEI 200
                 8999****************975278****9888886655554 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.059
     DUF3989  61 lqieHirrlelpvqiekdtles 82 
                  qi+H ++l l++ +++d+ +s
  CCD24738.1 319 KQINHLTQLSLNHLLNTDHSKS 340
                 59*************9999765 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.8   0.00039       1.4       2      24 ..      87     109 ..      86     109 .. 0.95
   2 ?    1.2   0.2      0.13   4.8e+02       2      15 ..     115     128 ..     114     139 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00039
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  f C  C+K F+ ++    H++S+
   CCD24738.1  87 FICSFCAKAFSRSEHKIRHERSH 109
                  99*******************97 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.13
                  CBBTTTTBBBSSHH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksen 15 
                  + C lCd  F  + 
   CCD24738.1 115 YKCLLCDHSFVRSD 128
                  89*****7776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1959  (0.109264); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 7935.33
//
Query:       CCD24739.1  [L=650]
Description: hypothetical protein NDAI_0D04250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-21   76.0   0.9    2.1e-20   73.5   0.3    2.5  2  Arrestin_C    Arrestin (or S-antigen), C-terminal domain
    1.5e-05   25.1   0.0    0.00063   19.8   0.0    2.5  2  Arrestin_N    Arrestin (or S-antigen), N-terminal domain


Domain annotation for each model (and alignments):
>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.22   1.9e+03      59      96 ..     219     259 ..     159     284 .. 0.80
   2 !   73.5   0.3   2.3e-24   2.1e-20       1     133 [.     366     523 ..     366     524 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.22
                 EEEEEEEEEE---...B-TTEE.EEEEEEE.----B----- CS
  Arrestin_C  59 eknvvaksdsvkv...tsaakdkletevelqiPeeltpssa 96 
                 ++++++k+d+ +v       k+ +e+ +++ +P+el+++ +
  CCD24739.1 219 FNRTITKEDNNNVstyFHLRKGYYELPFNIMLPNELPETIE 259
                 56777777777776665666777888888888888888764 PP

  == domain 2  score: 73.5 bits;  conditional E-value: 2.3e-24
                 ----EEEEEEES-SEEETT--EEEEEEEE.E-SSSEEEEEEEEEEEEEEEESS..SEEEEEEEEEEEEE---.......B-TTEE.EEEEEEE.----B CS
  Arrestin_C   1 wdgkvsleaslpkkgyvpGetipvtvkid.ndskkkvkkikvslvqhvdvcafnrsnkkeknvvaksdsvkv.......tsaakdkletevelqiPeel 91 
                 w++k+++e+s+p++++++G+ +p+++ki   ++++ ++ki+v l q+++++++n++  +++ ++ k+   k+       t+  +dk+e++ +++iP++l
  CCD24739.1 366 WKNKLQYEISIPSRAIPIGSMTPINIKIFpFQKGYILNKISVNLNQYYSMKDSNNEVYDDEVTIFKQSMTKFgnlveneTNMLVDKFELSSNVKIPNNL 464
                 99***************************77**********************8877777777777777777999*********************888 PP

                 --...---S---EEEEEEEEEEEEEEE.............S.SEEEEEEEEEEEEEB-- CS
  Arrestin_C  92 tp...ssarnvelikvsYklkvkltls.............g.sggelslelPivlgsvp 133
                 ++   +++ n +li+v +kl ++++l+             g ++ e++++lP+ l+++p
  CCD24739.1 465 KKltqDCDLNDDLIRVLHKLIIRIHLKrrsddddgmngnnGfKSLEIKANLPVLLYISP 523
                 88888999******************************9945888***********998 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.017   1.6e+02      18      54 ..      74     110 ..      69     130 .. 0.81
   2 !   19.8   0.0     7e-08   0.00063      83     131 ..     233     282 ..     204     288 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.017
                 EEEEEEE-CCCCTT.CEEEEEEEEEEEESSSSTTTTC CS
  Arrestin_N  18 vdGkvlleteelkkarkvkielsgkartgweesevag 54 
                 ++Gk +++ +e++ ++k+ ++l g+++    + +++g
  CCD24739.1  74 LNGKLIIRLNEDIIVKKIGLKLFGNFKLDFLQTNNNG 110
                 68***********************998766666554 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 7e-08
                 HHHHHHH-TTEEEEEE---TTS--SECS.GEEEEEEEEEEEEECCCE--C CS
  Arrestin_N  83 sqekLpkGehafpFsfelPknlpsSfeG.kaggvrYevkvtldrpwkidk 131
                 +   L kG ++ pF++ lP++lp ++eG + g+v Y ++ ++dr +k++ 
  CCD24739.1 233 TYFHLRKGYYELPFNIMLPNELPETIEGlQSGSVLYNFEGHIDRRKKSSI 282
                 334599**********************778*************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1332  (0.074293); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 4485.35
//
Query:       CCD24740.1  [L=434]
Description: hypothetical protein NDAI_0D04260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-41  138.4   0.1    5.9e-40  135.8   0.0    2.2  2  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    2.7e-38  131.8   1.5    2.2e-30  106.1   0.3    2.3  2  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    1.9e-07   30.7   0.2    0.00072   19.1   0.1    2.4  2  Pribosyltran    Phosphoribosyl transferase domain
  ------ inclusion threshold ------
       0.46   10.0   1.8       0.84    9.1   1.8    1.4  1  EBV-NA3         Epstein-Barr virus nuclear antigen 3 (EBNA-3)


Domain annotation for each model (and alignments):
>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.8   0.0   1.3e-43   5.9e-40       2     116 .]       5     120 ..       4     120 .. 0.98
   2 ?   -0.4   0.0      0.23     1e+03      36      85 ..     315     361 ..     305     368 .. 0.77

  Alignments for each domain:
  == domain 1  score: 135.8 bits;  conditional E-value: 1.3e-43
  Pribosyltran_N   2 kifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgysrqdr 96 
                     kif g+s++eL++ +++rlg+e + +++++fa+gE++v+i  svr++dv++iqs s+ +nd++mell++++a+r +sa++itaViP ++ys+q +
      CCD24740.1   5 KIFVGNSHPELGKLVCERLGIEPAPCTLKKFANGETSVQIGVSVRDEDVYVIQSGSPTINDHIMELLILVSACRGGSARKITAVIPQFPYSKQCK 99 
                     8********************************************************************************************** PP

  Pribosyltran_N  97 k.ksrepisaklvaklLeaaG 116
                     + k+r +i+a+++a+lL  aG
      CCD24740.1 100 MkKHRGAITARMLANLLVMAG 120
                     *788*************9998 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.23
  Pribosyltran_N  36 EikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaV 85 
                     E  +++  +vr++  +i+ ++++++   +     m++ +    ak++ +V
      CCD24740.1 315 EQLITLVGNVRDRSAIILDDMVDSPRSFISAAEHMAQNC---GAKKVYVV 361
                     566677789999999999999998888887777777777...36666666 PP

>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   4.2e-09   1.9e-05       1      41 [.     161     201 ..     161     230 .. 0.85
   2 !  106.1   0.3   4.8e-34   2.2e-30      55     183 ..     289     428 ..     247     429 .. 0.81

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 4.2e-09
                     TGGGEEEEESSGGGHHHHHHHHHHTT-EEEEE--------- CS
  Pribosyl_synth   1 dyrnavivakspgsakkatsyaerlrlglavihGeqkeaea 41 
                     dy +av+v+k+pg +k+ t+ a+ l++  a+ih ++++a+ 
      CCD24740.1 161 DYEDAVVVSKNPGGTKRVTALADALKINFAMIHTDRRRAKD 201
                     89********************************9887654 PP

  == domain 2  score: 106.1 bits;  conditional E-value: 4.8e-34
                     -.........---------------------EES--TTSEEEEEEEEE-S-HHHHHHHHHH.HHTT--EEEEEEEEE---TTHHHHHHHSS.--E CS
  Pribosyl_synth  55 e.........savekslelpellakekppltvvGdvgGriaiivddliddvesfvaaaevl.kerGaykiyvlathGllssdaprlleesa.ide 138
                     +          av++++e      ++   +t+vG+v  r aii+dd++d  +sf++aae + ++ Ga k+yv+athG+++ d  ++le+ + i++
      CCD24740.1 289 SdsyalggtyDAVDSEDEKEIEELQKEQLITLVGNVRDRSAIILDDMVDSPRSFISAAEHMaQNCGAKKVYVVATHGIFTGDCLQELEKCEyIHK 383
                     366666666656666666555555566789****************************9662677***********************97549** PP

                     EEEESSS--HHHHHT-TTEEEE--HHHHHHHHHHHHHT---TT-S CS
  Pribosyl_synth 139 vvvtntipheiqklrcskiktvdislllaeairrihngesmsylf 183
                     ++vtnt p   + l+++k+  +d+s ++ae+irr h+ges+s lf
      CCD24740.1 384 IIVTNTYPIPQESLNSKKLVVIDVSPIFAECIRRDHYGESISVLF 428
                     ******9999999*******************************9 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00016       0.7      18      76 ..     151     210 ..     147     229 .. 0.80
   2 !   19.1   0.1   1.6e-07   0.00072      79     122 ..     307     362 ..     261     388 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00016
                   TTEEEEEE.--GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-TTT--EE..... CS
  Pribosyltran  18 laaeilee.yngkpdvvvgiargGvpfakiladeLevplayvrkvkyrpdgseeaargss 76 
                   la++i+e+  +++  vvv    gG  ++++lad+L++ +a++   ++r+++  ++ r + 
    CCD24740.1 151 LAKWIRENvEDYEDAVVVSKNPGGTKRVTALADALKINFAMIHTDRRRAKDIYSQNRDLQ 210
                   788888887779999********************************9998777766554 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.6e-07
                   ............EE----TTSEEEEE-SEESSSHHHHHHHHHHH.CC-BSEEEEEE CS
  Pribosyltran  79 s...........rlledpagkkVliVDDildtGgTllaalelLk.ekgpeevriav 122
                               +l +++++++ +i DD++d+ ++ + a+e+++ ++g+++v +++
    CCD24740.1 307 KeieelqkeqliTLVGNVRDRSAIILDDMVDSPRSFISAAEHMAqNCGAKKVYVVA 362
                   1333334444667999*************************664389999887665 PP

>> EBV-NA3  Epstein-Barr virus nuclear antigen 3 (EBNA-3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.8   0.00019      0.84     191     240 ..     243     289 ..     217     294 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00019
                 XXXXXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     EBV-NA3 191 aafargqaqgiellrtegepvedatsetseesedveaesddeelPqivpr 240
                 ++ + +++ +     + g+  ed t +++++++d+ +esd ++ P iv+ 
  CCD24740.1 243 NGIQTARIRNG---HVIGDDEEDETENNKNDDNDTALESDSDDAPSIVAS 289
                 44444444443...4456667788999999999*************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.37
# Mc/sec: 3479.21
//
Query:       CCD24741.1  [L=1070]
Description: hypothetical protein NDAI_0D04270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-24   84.5   0.2    5.5e-24   84.5   0.2    3.9  4  Vps39_1       Vacuolar sorting protein 39 domain 1
    1.2e-09   38.6   0.6    5.1e-09   36.6   0.4    2.3  2  Vps39_2       Vacuolar sorting protein 39 domain 2
  ------ inclusion threshold ------
      0.026   14.5   0.0       0.12   12.3   0.0    2.2  1  HSDR_N_2      Type I restriction enzyme R protein N terminus 
      0.029   14.3   0.3       0.08   12.8   0.3    1.7  1  CTP_transf_3  Cytidylyltransferase


Domain annotation for each model (and alignments):
>> Vps39_1  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.6   7.3e+03      58      82 ..     233     258 ..     232     270 .. 0.68
   2 !   84.5   0.2   1.2e-27   5.5e-24       2     108 .]     648     755 ..     647     755 .. 0.97
   3 ?   -3.1   0.2       2.1   9.5e+03      52      90 ..     758     799 ..     756     801 .. 0.69
   4 ?    0.5   0.4      0.16   7.4e+02      49      89 ..     886     931 ..     843     967 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.6
     Vps39_1  58 ALeLlkelade.deedeedsslkgek 82 
                 AL++l++ +++ d++d+  s++++e+
  CCD24741.1 233 ALKMLEQSCKKfDKTDSLPSQDNDEY 258
                 89999999997655555555555444 PP

  == domain 2  score: 84.5 bits;  conditional E-value: 1.2e-27
     Vps39_1   2 DTaLlkvYlktkpklvgpLlrleNaCdlkdveeiLkkekkykeLidlYygkklheeALeLlkelade.deedeedsslkgeketiiqylqklseedldl 99 
                 D +L+++Y  + p++vgp++ ++N Cd+++v   Lk++++++eLid+ y +++h +ALe+l++l +e + +++  + +++ k ++  yl+kl +e l++
  CCD24741.1 648 DMVLFEIYFDYAPNMVGPFISVPNMCDFSIVFDKLKSRHMFQELIDFSYLRGEHDKALEFLTNLENEiEFSSKIPNLNEKIKALVTFYLKKLPNEYLET 746
                 889****************************************************************9999999999999999999************* PP

     Vps39_1 100 ileyskwvl 108
                 i++y++w+l
  CCD24741.1 747 IFKYTNWLL 755
                 *******97 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.1
     Vps39_1  52 kklheeALeLlkelade...deedeedsslkgeketiiqylq 90 
                 +k++++ L Ll+ l d+   d ++  +  +++ ke+ +qyl+
  CCD24741.1 758 NKNDSHDLLLLIFLNDSitrDASKVYEYINDKDKELSLQYLE 799
                 566777777777777766556666777777777787788875 PP

  == domain 4  score: 0.5 bits;  conditional E-value: 0.16
     Vps39_1  49 YygkklheeALeLl.kelade....deedeedsslkgeketiiqyl 89 
                 +++ ++hee+++Ll +el++       +++  +  ++  +ti+ yl
  CCD24741.1 886 FQRLNQHEESIDLLfTELSEYklaaGYCSRVYEHSSDDGKTILLYL 931
                 4555788888887723444435544444444444455555555554 PP

>> Vps39_2  Vacuolar sorting protein 39 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.8   8.3e+03       9      28 ..     841     860 ..     834     870 .. 0.79
   2 !   36.6   0.4   1.1e-12   5.1e-09       1     108 [.     949    1062 ..     949    1063 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.8
     Vps39_2   9 erldplevLdllPdelplkd 28 
                 +  +p +vL+ll d++++ +
  CCD24741.1 841 SVYEPRSVLELLDDKIKFDS 860
                 66788999***999998765 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 1.1e-12
     Vps39_2    1 lelLskhaerldplevLdllPdelplkdlesflekalrnslekkreeqvvkklrkaeklsveeellklrskkvvvteekvCavCkkrlge.sv.... 92  
                  +++L++ + +ld++   + +P++  +k++ + l +++++ + kk e++++k+l+++e  ++ +el ++ s+  v++++ +C+vC++++++ +     
  CCD24741.1  949 IQFLEEFSCKLDVIFLYRSIPSSCNMKSIGDILLRSIKSLSIKKDEKRMLKNLLHVELINITNELWTNYSQYGVLNDSYKCSVCRRNFSTlNTdtvc 1045
                  578999999*******************************************************************************975222223 PP

     Vps39_2   93 .fvvyPngsvvHlgCak 108 
                   f +   ++ +H++Cak
  CCD24741.1 1046 wFTIHGKNVYTHSSCAK 1062
                  36667778888888876 PP

>> HSDR_N_2  Type I restriction enzyme R protein N terminus (HSDR_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.8e-05      0.12      39     101 ..     349     410 ..     315     416 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
    HSDR_N_2  39 aDivvykkdkkpllivecKapsvkiseevleqlksYlealkaeylvvtNglehivykvdkkkk 101
                  Di++++++ k+l +v++++  + ++    + +k+ ++  ++ +lv+tN +e+ +yk++ +++
  CCD24741.1 349 SDILIMNNS-KTLRFVDYRHGFTFLEAMIEKGIKKVVNLWGIHFLVWTNDDEICFYKYQVDDG 410
                 4******99.9999***********9999999************************9988765 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   1.8e-05      0.08      71     195 ..     776     898 ..     764     950 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
                   SSHHHHHHHHH....HHHTTT.TTSEEEEE-TT-TT--HHHHHHHHHHHHHSTTSSEEEEEEETTSHHHHTSTTSTEEEETTTSBEEEEESSESSEE CS
  CTP_transf_3  71 esdterflevv....kaflmseneeiivnlqGdnPllqeevikkaietlkenqedylstlvkkvgkeeevlnandlkvllddagkalyfeesvipyi 163
                    +d + ++e +    k+++ + +e ++  l +  P+ + ++i++ +e+l+e     + ++ + + ++++v++++++  lldd+ k +  ++ +    
    CCD24741.1 776 TRDASKVYEYIndkdKELSLQYLEFTVGTLKSNDPMAHMTLIERYLENLNEP---TTRNKLQGMLEKTSVYEPRSVLELLDDKIKFDSSSRNDNSVF 869
                   5555555555511115566666666************************999...46677777777*****************66666666655554 PP

                   HHHHHCTSTTTSEEEEEEEEEEHHHHHHHHHH CS
  CTP_transf_3 164 reeplelsrrlylshagiytfrkeqplkelvi 195
                   ++++     +++ + +++  +r +q+ +  + 
    CCD24741.1 870 KDDDDL---KFVKFLKTYSFQRLNQHEESIDL 898
                   444444...25566666666666655555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1070 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       996  (0.0555525); expected 358.6 (0.02)
Passed bias filter:                      570  (0.0317921); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 7601.25
//
Query:       CCD24742.1  [L=311]
Description: hypothetical protein NDAI_0D04280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-24   86.0   0.0    6.9e-24   85.0   0.0    1.5  1  Rxt3      Histone deacetylation protein Rxt3


Domain annotation for each model (and alignments):
>> Rxt3  Histone deacetylation protein Rxt3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0   3.8e-28   6.9e-24       1     127 []     154     276 ..     154     276 .. 0.73

  Alignments for each domain:
  == domain 1  score: 85.0 bits;  conditional E-value: 3.8e-28
        Rxt3   1 tvkvprerlkeskr...eeivarrelWGtdvYtdDSDvvaaliHsGfirgewaedvdvslldlakkkakkkskeekskdeseaekklekkkkrtpvnvp 96 
                 tv+v +e+l +  +   + +v+++e+WG+d+YtdDSD+++al H+Gf     +++ ++   d + k + ++ ++++ +++ ++ ++ ++ k +  ++++
  CCD24742.1 154 TVHVLYEQLYDLFNestSPRVNNNEIWGSDIYTDDSDPLLALKHCGFS---IPNNKNK---DRSYK-HPSSGSNNEFRRTPANLENPDNVKGESYISTS 245
                 67888888877776666999***************************9...3333222...22222.22222233333344444444444556677888 PP

        Rxt3  97 ekkDlhvtlliLpkLekYastvrygikSRew 127
                 +k+Dl++t+l L++L+ Y  ++r+gi+SR+w
  CCD24742.1 246 KKFDLDITILYLQPLRYYPPMYRNGIWSRSW 276
                 ******************************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 2234.05
//
Query:       CCD24743.1  [L=70]
Description: hypothetical protein NDAI_0D04290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-17   61.5   0.2    8.3e-17   61.2   0.2    1.1  1  Ribosomal_L31e  Ribosomal protein L31e


Domain annotation for each model (and alignments):
>> Ribosomal_L31e  Ribosomal protein L31e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.2   4.6e-21   8.3e-17      39      82 .]       1      44 [.       1      44 [. 0.99

  Alignments for each domain:
  == domain 1  score: 61.2 bits;  conditional E-value: 4.6e-21
  Ribosomal_L31e 39 mgtpdvridtrLnkavwakgirnvpyrirvrlsrkrnedEdskn 82
                    mgt dvr+ ++Ln+a+w+kgi+ v yr+r r+srkrne+Ed+kn
      CCD24743.1  1 MGTDDVRLAPELNQAIWKKGIKGVEYRMRLRISRKRNEEEDAKN 44
                    9*****************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.28s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 517.00
//
Query:       CCD24744.1  [L=743]
Description: hypothetical protein NDAI_0D04300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-22   77.9  13.9    4.7e-22   77.9  13.9    6.7  6  BRE1          BRE1 E3 ubiquitin ligase
    8.5e-08   31.9  10.9    1.5e-07   31.2  10.9    1.4  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    1.6e-06   27.8  12.9      3e-06   27.0  12.9    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    4.8e-06   26.3   9.8    9.5e-06   25.4   9.8    1.5  1  Prok-RING_4   Prokaryotic RING finger family 4
    1.6e-05   24.8  13.2    3.2e-05   23.8  13.2    1.5  1  zf-RING_5     zinc-RING finger domain
    6.1e-05   22.8  13.9    0.00013   21.8  13.9    1.6  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    0.00069   19.9  12.2     0.0013   19.1  12.2    1.5  1  zf-RING_2     Ring finger domain
     0.0022   18.0  10.2     0.0055   16.7  10.2    1.7  1  zf-RING_UBOX  RING-type zinc-finger
     0.0097   15.7   0.8     0.0097   15.7   0.8    7.2  7  DivIC         Septum formation initiator
  ------ inclusion threshold ------
       0.13   12.1   3.7       0.38   10.7   3.7    1.8  1  zf-RING_6     zf-RING of BARD1-type protein
       0.71    9.7  10.7        1.5    8.7  10.7    1.6  1  zf-RING_4     RING/Ubox like zinc-binding domain
        3.3    7.9  10.1          8    6.7  10.1    1.7  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
        5.1    7.3  12.9         45    4.3  13.0    2.4  1  FYVE          FYVE zinc finger


Domain annotation for each model (and alignments):
>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   3.8    0.0094        13       2      37 ..     159     194 ..     140     203 .. 0.59
   2 ?   -0.4   2.1       0.9   1.2e+03      45      84 ..     285     324 ..     270     334 .. 0.51
   3 ?   -1.7  12.1       2.2   3.1e+03       5      88 ..     311     398 ..     304     408 .. 0.83
   4 ?   -1.2   3.9       1.5   2.1e+03      17      83 ..     422     452 ..     397     466 .. 0.54
   5 !   77.9  13.9   3.4e-25   4.7e-22       1      95 []     478     572 ..     478     572 .. 0.99
   6 ?   -1.7  13.2       2.3   3.2e+03       1      69 [.     597     665 ..     597     688 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0094
        BRE1   2 qkELvklekafeelseqlskkvkeltileekklrle 37 
                  + L+kl++++ +ls q++k+ ++lt+l+     l 
  CCD24744.1 159 MQNLEKLTNEKSKLSLQNEKLNNQLTSLQTHYESLI 194
                 344555555555555555555555555544444443 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.9
        BRE1  45 qkyfaamrskdalenelkkLnkllsKsselieqLkeleke 84 
                 +k+ + + ++ +len+++ Ln  l+   e+  + ++  +e
  CCD24744.1 285 KKILQYEVKISDLENQIVILNDTLKSLEEIKLENENKIRE 324
                 4444444444455555555554444444443333332222 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 2.2
        BRE1   5 LvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLke....lekefvrk 88 
                 L++++ + e+  ++l++ v++  +    k r ++ ++        +m ++d+l++e+k L++ +++  ++ ++L      + ++++++
  CCD24744.1 311 LEEIKLENENKIRELNTQVSQKINISISKDRFNSSISVDNSDRDMLMIKIDQLTKENKELTETNEQFLSKFQKLSSdqefITNNIKEQ 398
                 67777788888888999999999999999************************************99999999988555644444444 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 1.5
        BRE1  17 eqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkelek 83 
                  + ++++++l+ile++k++                                     el ++L+++ k
  CCD24744.1 422 TTRDELLSKLAILEKEKSKS------------------------------------ELLTDLENVNK 452
                 44444444444444444432....................................34444444444 PP

  == domain 5  score: 77.9 bits;  conditional E-value: 3.4e-25
        BRE1   1 lqkELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefvrklkeleke 95 
                 l kE++++e af+++s +l+kk+ +l++ e+ +++l++ek+kadqkyfaamrskd++ +e+k++ k+ +K ++li qLk+ e  +++k+++l+k+
  CCD24744.1 478 LLKEIQDMEMAFKDVSTLLNKKYIKLSNSESTITKLSVEKTKADQKYFAAMRSKDSILIENKNILKKFNKINDLILQLKDNEIILTKKIENLQKQ 572
                 579******************************************************************************************98 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 2.3
        BRE1   1 lqkELvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnklls 69 
                 l++E+ +l+k   +l++++ +  ++lt l + ++ +e e +k   k  ++++   +l  +l k nk+++
  CCD24744.1 597 LNSEINNLKKINSNLNQLNLTQANDLTKLNSLMKSIEMENKKLTSKNGQLEKTNMKLSDKLFKDNKSNN 665
                 789999999999999999999999999999999999999999999999998888888777766666655 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2  10.9   1.1e-10   1.5e-07       4      46 ..     690     732 ..     687     735 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.1e-10
                 B-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B CS
  zf-C3HC4_3   4 eCviClerprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrp 46 
                 +C++C ++ +n+++  CgH+ +C++C+++ l+ r +kCp C+ p
  CCD24744.1 690 YCSLCSKNWKNMAIKTCGHV-FCQDCCKERLAaRMRKCPTCNNP 732
                 8*******************.******999988********998 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0  12.9   2.2e-09     3e-06       1      40 []     690     729 ..     690     729 .. 0.96

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.2e-09
  zf-C3HC4_2   1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn.eCPlC 40 
                 +C +C    k+ + ++ CgHvfCq+C ++ L +   +CP+C
  CCD24744.1 690 YCSLCSKNWKN-MAIKTCGHVFCQDCCKERLAARMrKCPTC 729
                 6*********9.8****************9*99999***** PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   9.8   6.9e-09   9.5e-06       1      39 [.     691     732 ..     691     738 .. 0.87

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 6.9e-09
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdskdls...sCPlCqrr 39 
                  C lC+++ k+++++ CgH++C++C ++   +    CP C++ 
   CCD24744.1 691 CSLCSKNWKNMAIKTCGHVFCQDCCKERLAArmrKCPTCNNP 732
                  **************************98444455*****975 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8  13.2   2.4e-08   3.2e-05       2      43 ..     691     730 ..     690     731 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.4e-08
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll.ekeavCpiCr 43 
                 C+ C+++    +++ + +CgH+fC++C+k++l +++++Cp+C+
  CCD24744.1 691 CSLCSKNW---KNMAIKTCGHVFCQDCCKERLaARMRKCPTCN 730
                 99999999...99*****************************8 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8  13.9   9.4e-08   0.00013       1      41 []     691     729 ..     691     729 .. 0.98

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 9.4e-08
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 C++C +++k+   + +C+H fC++C ++ l   + +kCP+C
  CCD24744.1 691 CSLCSKNWKNMA-IKTCGHVFCQDCCKERLA-ARMRKCPTC 729
                 ************.******************.89999**** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1  12.2   9.2e-07    0.0013       3      44 .]     691     730 ..     689     730 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9.2e-07
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerwlrssst.CPlCr 44 
                 C++C ++++  + ++++ CgHvf+++C ++ l+ + + CP+C+
  CCD24744.1 691 CSLCSKNWK--NMAIKT-CGHVFCQDCCKERLAARMRkCPTCN 730
                 ****99996..455555.********998877777777****5 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7  10.2     4e-06    0.0055       1      39 []     691     727 ..     691     729 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4e-06
  zf-RING_UBOX   1 CpIClelftdP.lvlpCGHtFCreClwelskslegafkCP 39 
                   C+ C   +++  ++ +CGH+FC++C   + +   + +kCP
    CCD24744.1 691 CSLCSKNWKNMaIK-TCGHVFCQDCC--KERLAARMRKCP 727
                   999***9*988656.5**********..688888888888 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   3.5     0.018        25      18      54 ..     154     190 ..     151     201 .. 0.81
   2 ?    1.9   3.2      0.14     2e+02      18      53 ..     293     327 ..     289     331 .. 0.90
   3 !   15.7   0.8   7.1e-06    0.0097      25      66 ..     359     400 ..     351     405 .. 0.91
   4 ?   -1.1   0.1       1.2   1.6e+03      27      52 ..     411     436 ..     401     442 .. 0.74
   5 ?   -0.5   1.6      0.77   1.1e+03      24      52 ..     543     571 ..     535     581 .. 0.76
   6 ?    1.5   0.8      0.18   2.5e+02      19      38 ..     594     613 ..     581     628 .. 0.55
   7 ?    3.8   0.7     0.035        49      19      45 ..     629     655 ..     616     663 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksde 54 
                 +  +l q++++l++e  kl+ +ne+L+ ++  L+  +
  CCD24744.1 154 DKNKLMQNLEKLTNEKSKLSLQNEKLNNQLTSLQTHY 190
                 66788999**********************9996543 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksd 53 
                 ++++l+++i+ l+++l++l + + e e ++++L ++
  CCD24744.1 293 KISDLENQIVILNDTLKSLEEIKLENENKIREL-NT 327
                 6899***************************99.44 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 7.1e-06
                 HHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXX CS
       DivIC  25 eiaalqaelaklkaeneeLeaevkdLksdedyieerARselg 66 
                 +i++l++e+++l+++ne+  ++ ++L+sd+++i+   ++++ 
  CCD24744.1 359 KIDQLTKENKELTETNEQFLSKFQKLSSDQEFITNNIKEQFK 400
                 799*******************************99998875 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC  27 aalqaelaklkaeneeLeaevkdLks 52 
                 + l+++l +++ +++eL ++++ L++
  CCD24744.1 411 QSLEKDLTRIRTTRDELLSKLAILEK 436
                 45777888888888888777777754 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.77
                 HHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC  24 qeiaalqaelaklkaeneeLeaevkdLks 52 
                 ++ +++++ + +lk+ +  L++++++L++
  CCD24744.1 543 KKFNKINDLILQLKDNEIILTKKIENLQK 571
                 55667777788888888888888888864 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHHHHH CS
       DivIC  19 ykqlkqeiaalqaelaklka 38 
                 +  l++ei+ l++ + +l++
  CCD24744.1 594 LVNLNSEINNLKKINSNLNQ 613
                 33344444444444444444 PP

  == domain 7  score: 3.8 bits;  conditional E-value: 0.035
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  19 ykqlkqeiaalqaelaklkaeneeLea 45 
                 +k+++ e ++l+ ++ +l ++n++L +
  CCD24744.1 629 MKSIEMENKKLTSKNGQLEKTNMKLSD 655
                 344555555555555555555555554 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.7   0.00027      0.38       5      50 ..     686     733 ..     682     740 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00027
   zf-RING_6   5 ekllrcsrctdilrepvclggcehifcsncisdcfgs...gcpvcytpa 50 
                  +l+ cs c+   ++ + +  c h+fc +c  + + +    cp c  p 
  CCD24744.1 686 RQLVYCSLCSKNWKN-MAIKTCGHVFCQDCCKERLAArmrKCPTCNNPF 733
                 67999****998875.7899***********998876333699998885 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  10.7    0.0011       1.5      16      47 ..     702     733 ..     691     734 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0011
   zf-RING_4  16 kpCeCgyqiClfCyhrileeeegrCPaCreeY 47 
                    +Cg+ +C++C+++ l++   +CP C +++
  CCD24744.1 702 AIKTCGHVFCQDCCKERLAARMRKCPTCNNPF 733
                 5557************************9998 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  10.1    0.0058         8       1      42 []     691     729 ..     691     729 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0058
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeqllCplC 42 
                 C  C++  ++ +   CGh+fC+ C ++           Cp C
  CCD24744.1 691 CSLCSKNWKNMAIKTCGHVFCQDCCKERLAARMR---KCPTC 729
                 777777777766668*********9887666644...59988 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  13.0     0.033        45       8      58 ..     687     725 ..     680     735 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.033
                 --SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EEGGGTEEEEEEE CS
        FYVE   8 evkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvallekeaeeksvrv 58 
                 +   C+ C+k+++        ++CG+v+C++C+++++a+         +r 
  CCD24744.1 687 QLVYCSLCSKNWKN----MAIKTCGHVFCQDCCKERLAAR--------MRK 725
                 55679999999943....34579***********998544........444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2924  (0.163088); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        44  (0.00245412); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.18u 0.32s 00:00:01.50 Elapsed: 00:00:00.53
# Mc/sec: 4231.53
//
Query:       CCD24745.1  [L=985]
Description: hypothetical protein NDAI_0D04310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-17   64.1  13.6    1.7e-17   64.1  13.6    3.6  4  DUF1765   Protein of unknown function (DUF1765)
     0.0086   15.8   0.2      0.026   14.3   0.2    1.8  1  APP_E2    E2 domain of amyloid precursor protein


Domain annotation for each model (and alignments):
>> DUF1765  Protein of unknown function (DUF1765)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.5      0.39   3.5e+03      68      68 ..     121     121 ..      61     176 .. 0.57
   2 ?   -1.2   0.6      0.31   2.8e+03      26      61 ..     275     310 ..     257     331 .. 0.67
   3 !   64.1  13.6   1.9e-21   1.7e-17       1     125 []     445     572 ..     445     572 .. 0.88
   4 ?   -3.7   0.1       1.8   1.6e+04      74      89 ..     817     832 ..     809     842 .. 0.63

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.39
     DUF1765  68 l 68 
                  
  CCD24745.1 121 N 121
                 1 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.31
     DUF1765  26 lleefinileenekselpelldwefwlsvikmmles 61 
                 l+++f +i++  +++++   + w++w+ +i ++ +s
  CCD24745.1 275 LVKNFKIIQSYLKNDQIFMSFYWHYWYIIICTLSSS 310
                 344444444444444688888999998877766655 PP

  == domain 3  score: 64.1 bits;  conditional E-value: 1.9e-21
     DUF1765   1 fdsllkaiakktslydsnavfllldlleefinileeneks..elpelldwefwlsvikmmlesdnvqsllrtlsflfniwdlipedeerkkklfldlLl 97 
                 +ds++ ++++++s+yd+n+ ++++++l +fi++ +++ ++  ++ + ++w+ wl+++  ml+++n +s++ t+++lfniw+l+p   +r ++ f   L+
  CCD24745.1 445 HDSFTLKFMSRISAYDYNTGNIIFNKLFQFIIYKFHKYDHnlTFVSSFNWSKWLDGMIAMLKTNNLNSQIVTIICLFNIWSLLP---SRIQMHFATELI 540
                 688999**************************9999888778999**************************************6...555555555554 PP

     DUF1765  98 see...vfeklflhws.plVRsyyirLLvwri 125
                 + +   +f++l+++   +++ ++ ++++++++
  CCD24745.1 541 ELNqslIFDTLLIESFsNVIPILLWKFIIFKM 572
                 4333459*****99876999**********97 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 1.8
     DUF1765  74 lfniwdlipedeerkk 89 
                 +fn++++++ ++e++k
  CCD24745.1 817 VFNVFHMVNFANESFK 832
                 4555555554444444 PP

>> APP_E2  E2 domain of amyloid precursor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   2.9e-06     0.026     107     158 ..       3      58 ..       1      73 [. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2.9e-06
      APP_E2 107 lnekrr..kalekylqalqeeppnaerilkaLkkllraeqkdrvhtlrh..ykhll 158
                 +n+ +r  ++l+++l+ l+++p n+++  k+Lk+ +r+++ d    lrh  ++h+l
  CCD24745.1   3 INDEQRlfQSLNEFLAVLDRKPSNTKQCAKCLKETIRILKMDLLSLLRHqlHQHVL 58 
                 56655533799*********************************999994445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (985 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1581  (0.0881812); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 6467.93
//
Query:       CCD24746.1  [L=739]
Description: hypothetical protein NDAI_0D04320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00044   20.5  17.1      0.076   13.5   1.1    4.2  3  zf-C2H2        Zinc finger, C2H2 type
     0.0023   18.6  17.4      0.063   14.2   0.6    4.1  4  zf-C2H2_4      C2H2-type zinc finger
     0.0038   17.5   0.5        3.4    8.1   0.1    3.0  2  zf-C2H2_jaz    Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
       0.17   12.4  15.4       0.19   12.2   1.0    3.3  3  zf-H2C2_2      Zinc-finger double domain


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.9     0.053   2.4e+02       6      23 .]     210     228 ..     204     228 .. 0.90
   2 !   13.5   1.1   1.7e-05     0.076       1      23 []     654     679 ..     654     679 .. 0.94
   3 !   12.9   1.8   2.6e-05      0.12       1      20 [.     715     734 ..     715     739 .] 0.94

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.053
                 TTEEESSHHHHHHHHHC.C CS
     zf-C2H2   6 CgksFkrksnLkrHirt.H 23 
                 Cg s ++ ++L rH+   H
  CCD24746.1 210 CGLSLPSLHDLLRHYEDaH 228
                 **************87666 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.7e-05
                 EEET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirt.H 23 
                 +kCp  +C k++k++  Lk H    H
  CCD24746.1 654 FKCPviGCEKTYKNQNGLKYHKLHgH 679
                 8********************98777 PP

  == domain 3  score: 12.9 bits;  conditional E-value: 2.6e-05
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHi 20 
                 y+C++Cgk++k+   Lk H+
  CCD24746.1 715 YRCEVCGKRYKNLNGLKYHR 734
                 9******************6 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.3      0.03   1.4e+02       5      24 .]     209     228 ..     203     228 .. 0.81
   2 ?   -3.9   0.1         4   1.8e+04      13      21 ..     475     483 ..     470     484 .. 0.61
   3 !   10.9   0.5   0.00015      0.69       1      20 [.     654     675 ..     654     677 .. 0.93
   4 !   14.2   0.6   1.4e-05     0.063       1      20 [.     715     734 ..     715     737 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.03
   zf-C2H2_4   5 iCgksFsskkaLlrHlkthH 24 
                  Cg s +s ++LlrH +  H
  CCD24746.1 209 CCGLSLPSLHDLLRHYEDAH 228
                 39*************87665 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4
   zf-C2H2_4  13 kkaLlrHlk 21 
                   ++ +H++
  CCD24746.1 475 FMNIDHHMA 483
                 445667986 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00015
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHl 20 
                 fkCp+  C k+++++++L+ H 
  CCD24746.1 654 FKCPVigCEKTYKNQNGLKYHK 675
                 89*******************5 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 1.4e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHl 20 
                 ++C++Cgk++++ ++L+ H 
  CCD24746.1 715 YRCEVCGKRYKNLNGLKYHR 734
                 89*****************4 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0023        10       7      21 ..     661     675 ..     659     676 .. 0.94
   2 !    8.1   0.1   0.00076       3.4       2      20 ..     715     733 ..     714     734 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0023
                  TTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   7 CdKyFksenaldnHl 21 
                  C+K++k++n l+ H+
   CCD24746.1 661 CEKTYKNQNGLKYHK 675
                  ************995 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00076
                  CBBTTTTBBBSSHHHHHCC CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnH 20 
                  + C++C K +k+ n l+ H
   CCD24746.1 715 YRCEVCGKRYKNLNGLKYH 733
                  89**********9999988 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.2   0.00035       1.6       9      26 .]     648     667 ..     645     667 .. 0.88
   2 ?   -2.5   0.6       1.9   8.7e+03       1      13 [.     670     683 ..     670     686 .. 0.79
   3 ?   12.2   1.0   4.2e-05      0.19      12      26 .]     712     726 ..     710     726 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00035
   zf-H2C2_2   9 HtgekpyeCp..lCdkaFkt 26 
                 H   kp++Cp   C k++k+
  CCD24746.1 648 HEEHKPFKCPviGCEKTYKN 667
                 8888******877*****97 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.9
   zf-H2C2_2   1 nLrrHirk.Htgek 13 
                 +L++H    H ++k
  CCD24746.1 670 GLKYHKLHgHQNQK 683
                 599**986698876 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 4.2e-05
   zf-H2C2_2  12 ekpyeCplCdkaFkt 26 
                 +kpy C++C+k++k+
  CCD24746.1 712 DKPYRCEVCGKRYKN 726
                 79***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2966  (0.16543); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.24u 0.32s 00:00:01.56 Elapsed: 00:00:00.50
# Mc/sec: 4428.02
//
Query:       CCD24747.1  [L=243]
Description: hypothetical protein NDAI_0D04330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-39  133.4   4.5    7.8e-39  132.6   4.5    1.4  1  Bap31     Bap31/Bap29 transmembrane region
  ------ inclusion threshold ------
      0.059   13.8   0.2       0.55   10.7   0.1    2.2  2  DUF4094   Domain of unknown function (DUF4094)
      0.086   12.5   0.6       0.15   11.7   0.6    1.4  1  Wzy_C     O-Antigen ligase


Domain annotation for each model (and alignments):
>> Bap31  Bap31/Bap29 transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   4.5   1.3e-42   7.8e-39       1     132 [.      75     213 ..      75     216 .. 0.96

  Alignments for each domain:
  == domain 1  score: 132.6 bits;  conditional E-value: 1.3e-42
       Bap31   1 msLqytlvaalLvaeivvvllLvlPlpsavrkklfksllvsklsaklqialkillifllllflDavrrvrkvseeeeea.......aaklkleaesevq 92 
                 msL+y+lv+a+Lv+ei+++++L lP+ps+ rk l  +ll ++ +  +qialk++l f+lllf+D++++v ++++e+++         a  +++++ e+ 
  CCD24747.1  75 MSLYYSLVFAILVTEIILFAILALPIPSKFRKPLTLILLKPFKIPPIQIALKCILSFILLLFIDSINKVININKELSTTssnsnptPAISSSNDRIEIL 173
                 9**************************************************************************9999899988755678899***** PP

       Bap31  93 arkFyaQRNlYlsGftLfLslvlrrlvtliselakleakl 132
                  rkF+aQRN+Yl+G+tLfL++++ r++tl++el+ l++++
  CCD24747.1 174 SRKFFAQRNMYLTGITLFLTFIVMRTFTLVNELLDLKDRY 213
                 ***********************************99987 PP

>> DUF4094  Domain of unknown function (DUF4094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   9.2e-05      0.55       5      63 ..       7      68 ..       5      81 .. 0.61
   2 ?    0.6   0.0      0.13   7.9e+02       9      21 ..     127     139 ..     121     177 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.2e-05
     DUF4094  5 vllLcvasflagllftnRlwtvp.s.diirqsk..eelklvsedcds.kdaesrskdilg.evsk 63
                +l +c +sf ++ ++t+ +  ++ s +++ +++  ee+ + + +c + +  +   k++l+ + ++
  CCD24747.1  7 MLYMCKGSFPLSSYLTGYITHTStSiHTTTTNRqvEEEVVRTYNCPNpS-LK--AKQLLQtQHQQ 68
                689**************99655544443333334444444558887632.22..33455533333 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.13
     DUF4094   9 cvasflagllftn 21 
                 c+ sf++ l++ +
  CCD24747.1 127 CILSFILLLFIDS 139
                 9999998877765 PP

>> Wzy_C  O-Antigen ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   2.5e-05      0.15      25     109 ..      90     189 ..      76     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.5e-05
       Wzy_C  25 alivlliifykrri...........pfllllg.ilvgvilliilfvlstnletlknitkafgkldkk...kgkdksgssRlyiwkralplikdspilGt 108
                 ++++++++++ +             pf++ ++ i++  il +il+++ ++++++ ni+k+ ++++     + +  s++ R++i +r + + ++  ++G+
  CCD24747.1  90 IILFAILALPIPSKfrkpltlillkPFKIPPIqIALKCILSFILLLFIDSINKVININKELSTTSSNsnpTPAISSSNDRIEILSRKFFAQRNMYLTGI 188
                 33333333333333677778888889*********************************9999888888888888999999999999988888888887 PP

       Wzy_C 109 G 109
                  
  CCD24747.1 189 T 189
                 6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1307  (0.0728987); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1737.39
//
Query:       CCD24748.1  [L=273]
Description: hypothetical protein NDAI_0D04340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2109.21
//
Query:       CCD24749.1  [L=60]
Description: hypothetical protein NDAI_0D04350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.038   14.1   0.0      0.042   14.0   0.0    1.0  1  COX6C     Cytochrome c oxidase subunit VIc


Domain annotation for each model (and alignments):
>> COX6C  Cytochrome c oxidase subunit VIc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.4e-06     0.042       7      57 ..       7      57 ..       4      60 .] 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.4e-06
       COX6C  7 mrgllakrlkrhlvvafvlslgvaaaykfavaepRKkayadFYknYDaeke 57
                + g l++r+   +++ f l  ++a ++  ++ +++ ++ +d+Y +    k+
  CCD24749.1  7 ITGTLRRRIFTDIFIGFSLGGVIASYWWWGFHKQKVNKREDYYAKLAELKN 57
                6799***************************************99766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 497.20
//
Query:       CCD24750.1  [L=424]
Description: hypothetical protein NDAI_0D04360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-70  237.7   0.0    2.3e-70  237.5   0.0    1.0  1  Iso_dh        Isocitrate/isopropylmalate dehydrogenase
  ------ inclusion threshold ------
       0.12   12.3   0.1       0.24   11.3   0.1    1.5  1  NTP_transf_6  Nucleotidyltransferase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.5   0.0   2.6e-74   2.3e-70       1     348 []      21     412 ..      21     412 .. 0.93

  Alignments for each domain:
  == domain 1  score: 237.5 bits;  conditional E-value: 2.6e-74
                 EEEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CSSSSSSHHH.HHHHHHHHTT.EEEE CS
      Iso_dh   1 kiallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpkekevrpen.gLlaLrkeld.lfan 97 
                 k++++ ++ +G+e+++ +++ +k++  k++l+++++++d++ +++d+t+++++ ++++aik++ v +++a++tp+  e+r+++  L++++k+++ +++n
  CCD24750.1  21 KVSTPVVELDGDEMTRIIWDQIKTKLIKPYLDIDLKYYDLSIQSRDATKDQITIDAANAIKKYGVGIKCATITPD--EARVKEfNLTKMWKSPNgTIRN 117
                 57788899*******************************************************************..55555556********99**** PP

                 EEEEE-B.CCTTCCSSBTHHHHCT.-EEEEEEE-SSCGGCSSEEEEET......................TG.GGGEEEEEEEEEHHH.HHHHHHHHHH CS
      Iso_dh  98 lrpvkvf.eklkvksplkrevvee.vdlvivReltggiYfgeekekkg......................sifteevavdtklyseee.ieriaraafe 171
                 ++ ++vf e+++ + +++  ++++ + ++i R++  ++Y ++++ + g                      +   + ++v +++y+++e ie +a+ +f+
  CCD24750.1 118 ILGGTVFrEPIVIPRIPR-LIPGWeKPIIIGRHAHADQYKATDTLIPGpgklqlnfipsnaqenspitldVYDYKGSGVALAMYNTDEsIEGFAHSSFK 215
                 *******99999999999.7****9*******************************************973356779***********9********** PP

                 HHHHTTTSEEEEEESTTTTHHHH.HHHHHHHHHHCC......TTTTSEEEEEEHHHHHHHHHHSGGGGS.EEEE-HHHHHHHHHHHHHHTTSGCC-EEE CS
      Iso_dh 172 lAlkrgkkkvtlvdKanvlksse.lwrkiveevaee......eypdielehqlvDsaamqlvkspkqfd.VivtkNlfGDilSDeaaalvGslGllpSa 262
                 lA+++ k ++ l++K+++lk+++ ++++i++ ++e       +  +i++eh+l+D++++q++ks    + +++ kN++GD++SD +a+ +GslGl++S 
  CCD24750.1 216 LAIDK-KLNLFLSTKNTILKKYDgRFKDIFQSIYEThykakfQQLNINYEHRLIDDMVAQMIKSK--GGfIMALKNYDGDVQSDIVAQGFGSLGLMTSI 311
                 *****.****************************99888866666899***************99..4449**************************** PP

                 EEET.SS-EEEEESS---CCCTTSS-......S-THHHHHHHHHHHHHTTT-HHHH......HHHHHHHHHHHHH.TSCCHHHCTTS.TCCCHHHHHHH CS
      Iso_dh 263 slge.kkvaifEavHGsapdiagkdk......aNpiavilSaalmLryslgleeaA......dkiekAvekvlea.givTkDlagea.akevstsefgd 346
                  + + +k+   Ea+HG+++++++k +      +N+ia+i+++++ L  + +l+++       + +e+A  +++++ gi+TkDla  + +++v+t+ f +
  CCD24750.1 312 LVTPdGKTFESEAAHGTVTRHFRKFQkgeetsTNSIASIFAWSRGLLKRGELDKNDqlckfaNLLEAATLNTVQQdGIMTKDLALASgSQYVNTDGFLN 410
                 ****8999****************88899999************9988766666644455559**********999********999899****99988 PP

                 HH CS
      Iso_dh 347 av 348
                 av
  CCD24750.1 411 AV 412
                 76 PP

>> NTP_transf_6  Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.6e-05      0.24      20      71 ..      36      87 ..      29     106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.6e-05
  NTP_transf_6 20 ntvWdklhgkesetginDiDviYFdpsdlseeaek.aleaklkelfpelpwev 71
                    +Wd+++ k   ++  DiD+ Y+d s +s++a+k ++   ++++++++ + +
    CCD24750.1 36 RIIWDQIKTK-LIKPYLDIDLKYYDLSIQSRDATKdQITIDAANAIKKYGVGI 87
                  679*****98.777788********9988877654155556666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       678  (0.0378158); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3127.74
//
Query:       CCD24751.1  [L=382]
Description: hypothetical protein NDAI_0D04370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-54  183.5  20.2    5.5e-54  183.5  20.2    1.4  1  Pex19     Pex19 protein family
  ------ inclusion threshold ------
        6.9    6.2  32.9        1.1    8.8   9.2    2.7  3  GET2      GET complex subunit GET2


Domain annotation for each model (and alignments):
>> Pex19  Pex19 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.5  20.2   6.1e-58   5.5e-54       4     244 .]      82     382 .]      79     382 .] 0.86

  Alignments for each domain:
  == domain 1  score: 183.5 bits;  conditional E-value: 6.1e-58
       Pex19   4 eefakqlekemeelmkel............keeeeeeaeedfeellkqleeaaeaaaeaksaeasssaaes.............kaeeesfqdiikkTl 77 
                 ++ ++++ +e++ lmk++            +eee+++  e+f+++l++l++ +++++++ +++++++++++             ++ee +f++i++kTl
  CCD24751.1  82 NKEVQNMIDEFAGLMKNQkksqdeskngdiDEEEDAKLMEKFTNVLNTLDNVTKHPQTSVKNDNTTTTTTTttatnnvmgndkeDDEEGGFHKIVSKTL 180
                 566789999*********999988888888778888888888888888888888888888888887777777888999999988899999********* PP

       Pex19  78 erLkesgdkvdaaa..............eseeknsddllaqlLkqLeagadvegeggeegedlekmllgmmeqLssKevLyePlkelnekfpewLeenk 162
                 +rLke+++k+++++              +se++n+dd+l++lL+qL +g++ +geg+  ++++++++l++++q+ssKevL++P+ke++ +f+ew+++++
  CCD24751.1 181 DRLKENDKKINDKLsdennggkknknvsSSENGNPDDILSSLLDQLVQGGE-QGEGDIGEDGMDNAILNILNQMSSKEVLHQPMKEMYLEFDEWFKDHR 278
                 ***************************999****************65544.444444449************************************** PP

       Pex19 163 ekls.aedlerYekQaeivkeIvakFekedysdedkekreeilellqelqelGspPkeLvgdmpegle.glpkleae...................... 237
                 e+++ ++++ +Y+kQ+ i+++Iv+ +ek+dy+++   +r+ei++ll+el++lG++P   vg+  +g   g  +++++                      
  CCD24751.1 279 EEEEfKDKIVTYDKQYLIIGKIVTLYEKDDYTND--LYRDEITNLLDELEQLGDTP---VGNVNAGAAnGSSNNNTTmddfskllnidglgddnmdgfd 372
                 99999*****************************..********************...5665554443222222112356667778888888899999 PP

       Pex19 238 ...eegCkqq 244
                    +++C+qq
  CCD24751.1 373 eklKDTCNQQ 382
                 9999***998 PP

>> GET2  GET complex subunit GET2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  18.8    0.0086        77      47     166 ..      19     144 ..       6     160 .. 0.56
   2 ?    8.8   9.2   0.00012       1.1      39     152 ..     134     267 ..     124     303 .. 0.51
   3 ?   -1.0   0.0      0.13   1.1e+03     119     145 ..     335     361 ..     305     380 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.0086
        GET2  47 d.epaaekttpasttasssssas.....ehddpeiediseiavkpkktasskkksplseesepeapqldqllkqllqqqqqgnsensqdaesstP.dlf 138
                 d  pa+ ++++++ + ++++s++     + +d+e+e++ +i  k + +a+ ++  +++++s+ +++++++++ ++++  ++++++++++++     +++
  CCD24751.1  19 DeDPATLDQSDIKVKLNNTDSKDsinviNDNDKEEEKTRSISEKVEDNATIDN-GTTNARSNANNKEVQNMIDEFAGLMKNQKKSQDESKNGDIDeEED 116
                 44344444444444444444444556555566677776666555555555554.444555677788999998888877544444444444333335799 PP

        GET2 139 sqllkmmkqgegg............sakseeetssspeea 166
                 ++l++++++  ++            +            ++
  CCD24751.1 117 AKLMEKFTNVLNTldnvtkhpqtsvK------------ND 144
                 99****99999995554444433321............22 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00012
        GET2  39 ksst.tsvLdepaaekttpasttasssssas...................ehddpeiediseiavkpkktasskkksplseesepeapqldqllkqllq 117
                 ++   tsv + +++++tt++++t++   +++                   +++d++i+d      +++++  +k+k+ +s+e+ + +  l +ll ql+q
  CCD24751.1 134 TKHPqTSVKNDNTTTTTTTTTATNNVMGNDKeddeeggfhkivsktldrlKENDKKINDK----LSDENNGGKKNKNVSSSENGNPDDILSSLLDQLVQ 228
                 333334555434444444444444443333355677888888887666666666666662....22233333334444444322223367788888888 PP

        GET2 118 qqqqgnsensqdaesstPdlfsqllkmmkqgegg.......s 152
                   +qg+++ ++d+++   + + ++l++m+++e          
  CCD24751.1 229 GGEQGEGDIGEDGMD---NAILNILNQMSSKEVLhqpmkemY 267
                 877777666665543...444445555555443355555442 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.13
        GET2 119 qqqgnsensqdaesstPdlfsqllkmm 145
                 + +++  n+++++++t d fs+ll+  
  CCD24751.1 335 NVNAGAANGSSNNNTTMDDFSKLLNID 361
                 455666666777777779999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2465  (0.137487); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 2780.69
//
Query:       CCD24752.1  [L=157]
Description: hypothetical protein NDAI_0D04380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-44  150.7   0.1    2.2e-44  150.5   0.1    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
    0.00021   21.0   0.0    0.00024   20.8   0.0    1.2  1  Prok-E2_B  Prokaryotic E2 family B
  ------ inclusion threshold ------
       0.12   12.7   2.9       0.43   10.9   2.8    1.9  1  RWD        RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.1   3.7e-48   2.2e-44       1     137 [.       8     149 ..       8     152 .. 0.96

  Alignments for each domain:
  == domain 1  score: 150.5 bits;  conditional E-value: 3.7e-48
                 HHHHHHHHHHHSTTTTEEEEEEET....TEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT.--TT CS
      UQ_con   1 rlqkelkelakkkpsgisaklvdd....enlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeek.Wspa 94 
                 rlq+e k+++k++p g+ ak++++     nl++w++ i g+e+t++++gv+ +++e p++YP kpPkvk+   ++HPnv++sG++cl+iL+ee+ W+pa
  CCD24752.1   8 RLQEERKKWRKDHPFGFFAKPTKKtdgtMNLQKWEAGIPGKEGTLWAEGVYPITIEYPNEYPSKPPKVKLPAGFYHPNVYPSGTICLSILNEEQdWRPA 106
                 89*********************556889**************************************************************7767**** PP

                 SHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHH CS
      UQ_con  95 ltlesvllsiqsLlaepnpesplnkeaakllkkdreeykkkvk 137
                 +tl++++l iq Ll++pnp+sp+++ a++ ++k++ ey+kkv 
  CCD24752.1 107 ITLKQICLGIQDLLDSPNPNSPAQEPAWRSFSKNKVEYEKKVA 149
                 *****************************************95 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     4e-08   0.00024      34     130 ..      54     146 ..       6     150 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4e-08
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.egisgdedaefagEfqsYweseed 130
                  +g++++++ yp+++p  pp+v l+        p +++ +g +Cl     + + w p+ +++++   +q++L+  ++ +  +++ +  f++   ++e+
  CCD24752.1  54 AEGVYPITIEYPNEYPSKPPKVKLPAGF---YHPNVYP-SGTICLS-ILNEEQDWRPAITLKQICLGIQDLLDsPNPNSPAQEPAWRSFSKNKVEYEK 146
                 689*********************9887...6789999.******4.355666799999999999********9999999999999988876555555 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.8   7.1e-05      0.43      57      75 ..      60      78 ..      46     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.1e-05
                EEEEE-SSTTSS--EEEEE CS
                xxxxxxxxxxxxxxxxxxx RF
         RWD 57 leiklpeeYPeeaPiisls 75
                ++i++p+eYP+++P+++l 
  CCD24752.1 60 ITIEYPNEYPSKPPKVKLP 78
                79*************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1146.63
//
Query:       CCD24753.1  [L=639]
Description: hypothetical protein NDAI_0D04390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4658.55
//
Query:       CCD24754.1  [L=56]
Description: hypothetical protein NDAI_0D04400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.7e-15   54.4   3.6    8.5e-15   54.3   3.6    1.0  1  Ribosomal_S14   Ribosomal protein S14p/S29e
  ------ inclusion threshold ------
      0.059   13.7   2.3          1    9.7   0.3    2.1  2  Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase


Domain annotation for each model (and alignments):
>> Ribosomal_S14  Ribosomal protein S14p/S29e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   3.6   9.5e-19   8.5e-15       2      54 .]       7      56 .]       6      56 .] 0.97

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 9.5e-19
                   ------SS..CTTT---SSS--SSSEE-GGG-..EHHHHHHHTTT...TT-EE-- CS
  Ribosomal_S14  2 laklprnssptrirnrCrvtGrprGvirkfgL..sRicfRelAlkgelpGvkKaS 54
                   + ++pr +  ++++++Crv++ + G++rk+ L  +R+cfRe+A++   +G+ K++
     CCD24754.1  7 WFSHPRRY--GKGSRQCRVCSSHTGLVRKYDLniCRQCFRERAND---IGFYKYR 56
                   889*****..***********************************...*****95 PP

>> Prim_Zn_Ribbon  Zinc-binding domain of primase-helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.3   0.00012         1      15      38 .]       8      30 ..       7      30 .. 0.87
   2 ?    4.3   0.1    0.0057        51      27      31 ..      38      42 ..      36      51 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00012
                    EEETT....S-EEETTTTBXXXXX CS
  Prim_Zn_Ribbon 15 FrfddkdgrGtwfCrqCggggdgl 38
                    F+ +++ g+G+  Cr+C ++++gl
      CCD24754.1  8 FSHPRRYGKGSRQCRVC-SSHTGL 30
                    677888999********.999986 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0057
                    EETTT CS
  Prim_Zn_Ribbon 27 fCrqC 31
                    +CrqC
      CCD24754.1 38 ICRQC 42
                    9**** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 416.45
//
Query:       CCD24755.1  [L=266]
Description: hypothetical protein NDAI_0D04410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-43  147.6   2.4    6.1e-43  146.4   2.4    1.6  1  Rad52_Rad22  Rad52/22 family double-strand break repair prote


Domain annotation for each model (and alignments):
>> Rad52_Rad22  Rad52/22 family double-strand break repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.4   2.4   3.4e-47   6.1e-43       1     152 [.      45     232 ..      45     233 .. 0.90

  Alignments for each domain:
  == domain 1  score: 146.4 bits;  conditional E-value: 3.4e-47
  Rad52_Rad22   1 kietlqskLekklgpeyvsqregksgkkvaylegskviqlaNevFgfnGWsseiesievdeieeeqegq............................. 69 
                  +i+ lqsk+ek+++++y+s+r gk++  ++++ ++k++++aNe Fgf+GW +++++i ++e+ +++ +                              
   CCD24755.1  45 RIGILQSKIEKYTYKIYHSNRFGKHNL-SKLIARHKLVEFANETFGFDGWHMDVIDIDARELLNSSAKVnltktigtntnnnensedndrkpkkigik 141
                  5788***********************.******************************666633222223556666666666777777899999**** PP

  Rad52_Rad22  70 ...............rysvkaealvrvtlkdGtyrediGfgtatnvpskgeafekakKeAvtdAlKrAllqfgnvlGnclydleqekkvkklkkedge 152
                                 +++v aea+vr+tlkdGt++++ G+g+at +p kg++f+kakKeAv+dAlK+All+f++++      l++e+kv++++++dg 
   CCD24755.1 142 ddeeskdndngdhniKHTVLAEAQVRITLKDGTNTQMGGIGKAT-MPFKGDSFSKAKKEAVNDALKKALLSFEKII------LDYETKVENNYYVDGL 232
                  ********************************************.*******************************......9**********99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1141  (0.0636399); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1976.84
//
Query:       CCD24756.1  [L=1914]
Description: hypothetical protein NDAI_0D04420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     9e-102  340.4   7.6     9e-102  340.4   7.6    2.4  2  Uso1_p115_head  Uso1 / p115 like vesicle tethering protein, h
    9.3e-09   35.7  56.4    9.3e-09   35.7  56.4   15.6 12  Uso1_p115_C     Uso1 / p115 like vesicle tethering protein, C
     0.0023   17.4  18.9     0.0023   17.4  18.9    9.8  9  Golgin_A5       Golgin subfamily A member 5
     0.0054   17.0  21.8     0.0054   17.0  21.8   12.3 12  ATG16           Autophagy protein 16 (ATG16)
  ------ inclusion threshold ------
      0.077   13.6   0.8        1.9    9.1   0.1    3.8  3  YdaT_toxin      Putative bacterial toxin ydaT


Domain annotation for each model (and alignments):
>> Uso1_p115_head  Uso1 / p115 like vesicle tethering protein, head region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.4   7.6  2.5e-105    9e-102       1     312 []     364     697 ..     364     697 .. 0.95
   2 ?   -5.5   1.7       4.9   1.8e+04     125     167 ..    1231    1273 ..    1225    1279 .. 0.72

  Alignments for each domain:
  == domain 1  score: 340.4 bits;  conditional E-value: 2.5e-105
  Uso1_p115_head   1 NaqlQeeFakidvp..dpslpseakaaeklkl..vlvidaLldlaLsaesvqvfdlRvAaleclkayltnneelkleflsraiegykesnde... 88 
                     N+ +Q eF+kidvp  dpslp+ +k++ ++++  + vid+L++++L+a+sv++fd+R+Aa e+lkay+++n +++++fls++ie y++sn+    
      CCD24756.1 364 NEYAQAEFTKIDVPyfDPSLPTVEKDTPQEETlsISVIDLLMNWILYANSVHTFDTRMAASELLKAYFYDNFQIQKDFLSHQIEVYTNSNSLssn 458
                     8899*********999*********999996669*******************************************************998999 PP

  Uso1_p115_head  89 ..tssassnllealleldaelaldpykvwFasvillhlleene....eakelarsvklgd.....eesg.eevvsliqtiselLitslraaadaR 171
                       ++s +sn +e+ll++d++l+l+pyk++F ++++++l+++++    e+k l+ s++ ++     e+++ +e++s iqt+ elL+tsl++ ad+R
      CCD24756.1 459 stHTSVKSNAFEVLLNYDPDLKLNPYKLFFVTDLVMYLFNDENgeamELKGLLKSLNHESvvvegEQEEvDEQMSPIQTVLELLLTSLNS-ADIR 552
                     988899*************************************999988999988877767777755556*******************9.9*** PP

  Uso1_p115_head 172 isigylmLLivWlfedpdaVndfLsessnlqsLiqalsqsssedvlvqGLcaflLGviyefstkdspvsRadlhslltkrigrdnyiskiaqlre 266
                     i+i+y +LLi+Wl++d +aVndf+s++ n+++L+++++q ++ed+++++++ +lLGv yefs+kdsp++R+++++++tk+igrdny+s+i+q+++
      CCD24756.1 553 IPISYTSLLIFWLYGDLNAVNDFVSNRANIEQLLTFSYQIQDEDITIKCMISMLLGVSYEFSSKDSPFPRKEYFEFFTKTIGRDNYSSRIKQFKN 647
                     *********************************************************************************************** PP

  Uso1_p115_head 267 delfrkfeeep...kl.ssskddtglpevyfdseFvelfkdnfsriqral 312
                     d+lf+k+++++   +  s ++d+tglp++yf+++F++lf+dnf+ri +al
      CCD24756.1 648 DSLFSKIDKSKlisHDlSFETDETGLPKIYFSEYFIHLFNDNFHRIINAL 697
                     ********999876334779999***********************9996 PP

  == domain 2  score: -5.5 bits;  conditional E-value: 4.9
  Uso1_p115_head  125 leeneeakelarsvklgdeesgeevvsliqtiselLitslraa 167 
                      l++ne   e +r+  l+d+++ +e++s++++  + L +  + +
      CCD24756.1 1231 LNQNEMEAEKLRENLLKDQNASKEEISALENTLKELHSEKETQ 1273
                      6677766677777777788888999999999999888876654 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.5       4.8   1.7e+04      86     122 ..     494     530 ..     493     533 .. 0.59
   2 !    4.8   7.4    0.0096        34       9      76 ..     720     789 ..     712     795 .. 0.59
   3 ?   -0.9  21.8      0.56     2e+03       4      83 ..     768     845 ..     759     864 .. 0.69
   4 ?  -18.0  31.9         5   1.8e+04      12      59 ..     892     965 ..     842    1044 .. 0.48
   5 ?    1.7  18.2     0.088   3.2e+02       2      83 ..    1044    1130 ..    1043    1131 .. 0.86
   6 ?   -2.7  19.3         2   7.1e+03       6      86 ..    1118    1200 ..    1113    1202 .. 0.84
   7 ?  -30.8  57.5         5   1.8e+04       3      61 ..    1263    1316 ..    1201    1399 .. 0.53
   8 ?  -21.2  43.1         5   1.8e+04       7      99 ..    1376    1489 ..    1373    1550 .. 0.53
   9 ?  -24.1  46.3         5   1.8e+04       6      98 ..    1630    1716 ..    1530    1722 .. 0.73
  10 ?    1.4  19.4      0.11     4e+02       2      76 ..    1678    1750 ..    1673    1771 .. 0.80
  11 ?   -9.8  24.6         5   1.8e+04      15      68 ..    1719    1798 ..    1705    1812 .. 0.42
  12 !   35.7  56.4   2.6e-12   9.3e-09       4     126 .]    1785    1902 ..    1772    1914 .] 0.64

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.8
  Uso1_p115_C  86 LlllgDleeKvekykarLkelGeevsddedddeddee 122
                  + l+ D+     ++k  Lk+l  e    e+++e+ +e
   CCD24756.1 494 MYLFNDENGEAMELKGLLKSLNHESVVVEGEQEEVDE 530
                  5566666666677777777777776444555444444 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0096
  Uso1_p115_C   9 eaaslkdeneklkaelqslskalesleqk..eakkaaesqakeleaenkklekeleklraelkeekekek 76 
                  + ++lk+e ++l+++ +s+ ++l+ +  +  +++++ + + k++e +n+ l+ +l +l++el+e+ke+ k
   CCD24756.1 720 KCNDLKNEIQELQTSSRSSIDSLQLKLDTitKEFEETSGNLKTYELNNSNLQAKLSQLESELNEAKETLK 789
                  5555555555555555555444444444455556666666777777777777777777777777777655 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.56
  Uso1_p115_C   4 seleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklek...eleklraelkeekekekekqkEld 83 
                  s+l+ + ++l++e +++k  l++ +++ ++l++       +++ ++le+ nkk ++   +l k+++elk + e +k++ ++++
   CCD24756.1 768 SNLQAKLSQLESELNEAKETLKKVNDECRELNKL-----KNENLQKLEKDNKKIQDldtKLHKVQQELKISSEAKKKAHDDIN 845
                  4556666666666666666666666666666666.....66677777777777777777999999999988887776655555 PP

  == domain 4  score: -18.0 bits;  conditional E-value: 5
  Uso1_p115_C  12 slkdeneklkaelqslskalesleqk..........................eakkaaesqakeleaenkklek 59 
                  + ++e e+l+++l++l+++++sle++                          e++k+ ++  k le+e+ +le+
   CCD24756.1 892 EKSKEIETLNKKLEELKNNITSLEKEkdgtalalqhwkskfeshdalvpkltEKLKSLATSFKLLEKEKLALEN 965
                  33334444444444444444444443333333333333333333333444444444444444444444444444 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.088
  Uso1_p115_C    2 kaseleseaaslkdeneklkaelqslskalesleqk.....eakkaaesqakeleaenkklekeleklraelkeekekekek.qkEld 83  
                   +++ele+e+a+  +  ++l+ +l+ ++k+le++ q+     e ++++++q  ++e+++++l+ + e+  ++l+++  + + k q+El 
   CCD24756.1 1044 QLKELETEKAEGDQKLANLEEKLNMMKKQLEDKDQQltklcEGEANNKKQLVTAEETISSLKADKETFMEKLEASGLEVE-KlQTELK 1130
                   689**********************************9999999999999*************88888888877555444.3366665 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 2
  Uso1_p115_C    6 leseaaslkdeneklkaelqslskalesleqk..eakkaaesqakeleaenkklekeleklraelkeekekekekqkEldDLL 86  
                   +  e+++l++e +++k + ++++++l++++++   +  a++++  +le+  kk +  ++k +a+++e +ek +ek++El D L
   CCD24756.1 1118 SGLEVEKLQTELKDTKLQHGEAETRLTNMKKEhaDKDIANNEKICSLEEDLKKQQIVMDKEKANAEELEEKLNEKETELADVL 1200
                   5557889999999999999999999999999966666677778889999999999999***************9*****9976 PP

  == domain 7  score: -30.8 bits;  conditional E-value: 5
  Uso1_p115_C    3 aseleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekel 61  
                   ++el se++++ +e++kl+++++sl+++l ++++k      +s+ ++l ++++k ++e 
   CCD24756.1 1263 LKELHSEKETQMEEKSKLESDIKSLETELDETKKK-----HASEIESLHEQIEKINEET 1316
                   34444455555555555555555555555555544.....2222222222222222222 PP

  == domain 8  score: -21.2 bits;  conditional E-value: 5
  Uso1_p115_C    7 eseaaslkdeneklkaelqslskalesleqk.........eakkaaesqakeleaenkklekeleklraelkeekekekek...........qkEl 82  
                   e++ ++l++  +  ++el++ +k+l +++++         + k aa+ ++++le+e+k+ + el++  ++ ++e++  +e             +El
   CCD24756.1 1376 ENRLKMLEEDVKLKEKELSEHKKSLLEAQEQeksstielaKLKSAAADEKNKLEEEIKSCKVELKNKAQAFEKERKLLNEGsssitkeysekVSEL 1471
                   566666666666677777777666666666655333333333333333333333333333333333333333333322222555555555554455 PP

  Uso1_p115_C   83 dDLLlll.gDleeKveky 99  
                   +D L+ + +  ++K+e++
   CCD24756.1 1472 EDKLEAVnSAHQSKLEEL 1489
                   554443312233333333 PP

  == domain 9  score: -24.1 bits;  conditional E-value: 5
  Uso1_p115_C    6 leseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekekekqkEldDLLlllgDleeKvek 98  
                   l+++++sl++ene+l +++++l++++ +  ++       + +k++ +e k   ++l kl+++l++ +++++++++ ++DL   +gD ee+ ++
   CCD24756.1 1630 LKEKNESLSEENETLSKSADQLKSEVSKRDEA------LKISKKVIDEYKVKDEQLSKLQSQLAQVNKEYSDSKQAMEDLQKRIGDAEENTKQ 1716
                   34444444444444444444444444444444......6677777777777777888888888888888888888888888888888888776 PP

  == domain 10  score: 1.4 bits;  conditional E-value: 0.11
  Uso1_p115_C    2 kaseleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekek 76  
                   ++s+l+s+ a++++e ++ k+ +++l+k++ ++e+    k+ ++ +k+ e+++k+leke+e+++a+l+ ++++  
   CCD24756.1 1678 QLSKLQSQLAQVNKEYSDSKQAMEDLQKRIGDAEEN--TKQFNNTKKDDEDKIKQLEKEVEDMKAKLELSESSVA 1750
                   567888888888888888888888888888888888..88888888999999999999***99999998777654 PP

  == domain 11  score: -9.8 bits;  conditional E-value: 5
  Uso1_p115_C   15 deneklkaelqslskalesleqk..........................eakkaaesqakeleaenkklekeleklrael 68  
                   + +++ ++++++l+k++e+++ k                          e + a +++++++e+++++le e +++ +e 
   CCD24756.1 1719 NTKKDDEDKIKQLEKEVEDMKAKlelsessvandqlkiselekiiednkEILLAEKEVNQKQEKSIQSLELEKKTVVEEK 1798
                   55555555555555555555555322111111111114333333444433333344444444444444444444444433 PP

  == domain 12  score: 35.7 bits;  conditional E-value: 2.6e-12
  Uso1_p115_C    4 seleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekekekqkEldDLLlllgDleeKveky 99  
                   ++le e++++ +e++kl+ +l++ s +  ++ ++      +++++e+++e + l+++l++l+++ ++ k+k  e+++EldDL+ll++ l+eK++ky
   CCD24756.1 1785 QSLELEKKTVVEEKRKLEEKLDEESAQHIKKTET-----FAKENEEQKDELETLKEKLKTLEEQNQKFKNKL-EDKSELDDLMLLVTELDEKNSKY 1874
                   2333334444444444444444443333333333.....455566666666666666666666666655555.35********************* PP

  Uso1_p115_C  100 karLkelGeev.sddedddeddeedeee 126 
                   + +L+elG e+ sdd+ddd+dd++d+ee
   CCD24756.1 1875 RLKLEELGAELtSDDDDDDDDDDDDDEE 1902
                   ***********76666666666666554 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4  18.9   6.5e-07    0.0023      61     177 ..     712     828 ..     703     831 .. 0.90
   2 !    7.1  21.1   0.00091       3.3      54     163 ..     800     912 ..     794     921 .. 0.81
   3 !    8.1  22.5   0.00045       1.6      25     163 ..     941    1081 ..     936    1095 .. 0.85
   4 ?    1.9  32.7     0.034   1.2e+02      20     189 ..    1073    1241 ..    1073    1245 .. 0.70
   5 !   14.3  24.1   5.8e-06     0.021      25     137 ..    1240    1351 ..    1237    1360 .. 0.85
   6 ?   -1.3  22.8      0.32   1.2e+03      73     164 ..    1357    1448 ..    1345    1455 .. 0.89
   7 ?    3.3  31.3     0.014        48      38     170 ..    1456    1593 ..    1447    1610 .. 0.82
   8 ?   -9.3  39.7         5   1.8e+04       8     154 ..    1608    1769 ..    1598    1790 .. 0.42
   9 ?   -9.1  29.4         5   1.8e+04      60     140 ..    1773    1854 ..    1746    1887 .. 0.36

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 6.5e-07
   Golgin_A5  61 eelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekeieklrnqlttk. 158
                 e  ++ + ++++l++e+q+l+++  + ++sl+ +l  + +++ee + + +++e + ++l+ +l+ le+el ++k+tl+ +++d  +e++kl+n+  +k 
  CCD24756.1 712 ETFEEIQLKCNDLKNEIQELQTSSRSSIDSLQLKLDTITKEFEETSGNLKTYELNNSNLQAKLSQLESELNEAKETLK-KVNDECRELNKLKNENLQKl 809
                 56788899******************************************************************9986.78899*********987773 PP

   Golgin_A5 159 slsssseselesRlkqLte 177
                 ++ + + ++l+ +l++  +
  CCD24756.1 810 EKDNKKIQDLDTKLHKVQQ 828
                 55566889******98765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00091
   Golgin_A5  54 qerdllreelqklnqqieqlrtelqdleaqqq..aea.eslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekeie 149
                 + ++   ++l+k n++i++l t+l++++++ +  +ea +++++ ++++   l   +++k+e+e +  +l++++++  ++  ++k++l+++i+++ keie
  CCD24756.1 800 KLKNENLQKLEKDNKKIQDLDTKLHKVQQELKisSEAkKKAHDDINKMSRDLIGLSREKQELEGKCGSLERDMKIKSNNFDQEKNKLNQKIQEKSKEIE 898
                 4445555778899999999*99999998875411444156788999999999999******************************************** PP

   Golgin_A5 150 klrnqlttkslsss 163
                  l+++l   +++ +
  CCD24756.1 899 TLNKKLEELKNNIT 912
                 ****9987655543 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00045
   Golgin_A5   25 kliasLkegsgeegl.es.stalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerl 119 
                  kl ++Lk+ +++ +l e  + al+ ++ + ++e+ ++++e qk+ + i + r  l+  ++   a++++l+e   +l+++ +  ++a e+v++ele+ 
  CCD24756.1  941 KLTEKLKSLATSFKLlEKeKLALENDFTKYRSEHSHQNAEFQKAIGDITKERDLLRSEKETLVANFSQLKELSDKLKTENSDHSAAYEAVKNELEES 1037
                  677888875544333033134567777888999*******************99999999999********************************** PP

   Golgin_A5  120 keelryleeelvrskatlqsrikdrekeieklrnqlttkslsss 163 
                  + +++   +el  +ka+  +++ + e++++ +++ql  k ++ +
  CCD24756.1 1038 MLHMNEQLKELETEKAEGDQKLANLEEKLNMMKKQLEDKDQQLT 1081
                  *************************************9977654 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.034
   Golgin_A5   20 LQsKekliasLkegsgeeglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqa.eaeslreqlqeleeqleeerkakeeveae 115 
                  L +K++ + +L eg+++++ ++  +++  +++lk++++++ e+l+++  ++e+l+tel+d++ q+ + e++ ++ + +++++ ++ ++++  ++e++
  CCD24756.1 1073 LEDKDQQLTKLCEGEANNKKQL-VTAEETISSLKADKETFMEKLEASGLEVEKLQTELKDTKLQHGEaETRLTNMKKEHADKDIA-NNEKICSLEED 1167
                  5689999999999998888777.5567789*******************************988844044444444444444444.44444446666 PP

   Golgin_A5  116 lerlkeelryleeelvrskatlqsrikdrekeiek.lrnqlttk.slsssse..selesRlkqLtesLiqKQtvlEal 189 
                  l++++    ++ +e   + ++l+++++++e+e+ + lrn+ + + +l++sse  + l++ l +Lte L q     E+l
  CCD24756.1 1168 LKKQQI---VMDKEK-ANAEELEEKLNEKETELADvLRNKAAIEkELTESSEkiKTLNAELEALTEKLNQNEMEAEKL 1241
                  655443...333333.35679999********988778776543255555442268999*******998877666666 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 5.8e-06
   Golgin_A5   25 kliasLkegsgeeglesstalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlke 121 
                  kl ++L +++ +++ e   al+  l el++e++++ ee  kl++ i++l tel+++++++ +e+esl+eq+++++e+ +  ++  e++ ++l+r++ 
  CCD24756.1 1240 KLRENLLKDQNASK-EEISALENTLKELHSEKETQMEEKSKLESDIKSLETELDETKKKHASEIESLHEQIEKINEETKDFKAIIEKAASNLKRTES 1335
                  55555443332222.333568999************************************************************************* PP

   Golgin_A5  122 elryleeelvrskatl 137 
                  +l++l+e  +++ ++l
  CCD24756.1 1336 DLKVLKEKYTKNEEKL 1351
                  *******999877765 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 0.32
   Golgin_A5   73 lrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekeieklrnqlttkslssss 164 
                    +e ++l+++q++e e l+++l+ lee ++ ++k+  e ++ l + +e+ ++   el + k+    + ++ e+ei++ + +l++k++   +
  CCD24756.1 1357 ASKEHAELKKKQESEYELLENRLKMLEEDVKLKEKELSEHKKSLLEAQEQEKSSTIELAKLKSAAADEKNKLEEEIKSCKVELKNKAQAFEK 1448
                  45677999******************************************************************************987555 PP

  == domain 7  score: 3.3 bits;  conditional E-value: 0.014
   Golgin_A5   38 gles.stalsaeldelkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrs 133 
                  g++s +++ s +++el+++ +++++  q+  +++++l+t++ +le++++++ ++ +  +  lee++++++k   ++++e+e  +e+ + ++++l+++
  CCD24756.1 1456 GSSSiTKEYSEKVSELEDKLEAVNSAHQSKLEELDSLKTNMIELENKNSEQLKKEKASIVILEETISKQKKDIDNLHSEVEDSQEKCKNINKDLTKK 1552
                  333324567889999999999**************************************************************************** PP

   Golgin_A5  134 katlqsrikdrekeieklrnqlttksls....ssseseles 170 
                    ++qs  +  +++++++++ +  k+ +    s s +ele+
  CCD24756.1 1553 LREMQSASETYDSNLKRMEETIEEKNVEieksSKSIEELEK 1593
                  ********************999985431000224445544 PP

  == domain 8  score: -9.3 bits;  conditional E-value: 5
   Golgin_A5    8 eledYKqkAarILQsKekliasLkegs..geeglesstalsaeldelkqe...rd.llr......eelqklnqqieqlrtelqdleaqqq...aeae 89  
                  e ++  +k + IL  K   i +Lke++   +e++e   +ls+  d+lk+e   rd +l+      +e +   +q+++l+++l++++++++   + +e
  CCD24756.1 1608 ENTEVIKKNKDILDEKISEIGNLKEKNesLSEENE---TLSKSADQLKSEvskRDeALKiskkviDEYKVKDEQLSKLQSQLAQVNKEYSdskQAME 1701
                  44555555556666665556666654311112222...22222222222110011111122222234444444555555555555544421112334 PP

   Golgin_A5   90 slreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatl...qsrikdrekeieklrnq 154 
                   l++++ ++ee+ ++ +++k++ e+++++l++e++ ++  l  s +++   q +i + ek ie+ ++ 
  CCD24756.1 1702 DLQKRIGDAEENTKQFNNTKKDDEDKIKQLEKEVEDMKAKLELSESSVandQLKISELEKIIEDNKEI 1769
                  44444455555555555555555555555555555554433333222211244555555555554443 PP

  == domain 9  score: -9.1 bits;  conditional E-value: 5
   Golgin_A5   60 reel.qklnqqieqlrtelqd.leaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsr 140 
                  ++e+ qk++++i++l  e +  +e++++ e +  +e  q+++++ +   k++ee ++ele lke+l++lee++++ k++l+ +
  CCD24756.1 1773 EKEVnQKQEKSIQSLELEKKTvVEEKRKLEEKLDEESAQHIKKTET-FAKENEEQKDELETLKEKLKTLEEQNQKFKNKLEDK 1854
                  1111011222233333332211222222222222222222222222.222223333344444444444444333333333332 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0  18.0   0.00021      0.74      84     183 ..     722     815 ..     696     818 .. 0.85
   2 ?    0.1   9.1      0.22   7.8e+02      61     130 ..     805     870 ..     798     882 .. 0.73
   3 !    8.4  10.6   0.00064       2.3      95     180 ..     881     966 ..     876     969 .. 0.95
   4 !    9.7  31.1   0.00025       0.9      15     181 ..     976    1150 ..     969    1152 .. 0.62
   5 ?    2.8  17.8     0.034   1.2e+02      53     149 ..    1097    1188 ..    1078    1193 .. 0.78
   6 !    4.8  29.7     0.008        29      68     180 ..    1174    1290 ..    1157    1290 .. 0.82
   7 !    5.2  19.8     0.006        21      70     177 ..    1250    1354 ..    1245    1355 .. 0.87
   8 ?   -6.4  38.0         5   1.8e+04      36     180 ..    1275    1431 ..    1269    1434 .. 0.75
   9 ?   -2.5  17.0       1.4     5e+03      95     184 ..    1423    1514 ..    1406    1516 .. 0.85
  10 !    8.8  20.9   0.00049       1.8      74     186 ..    1512    1621 ..    1505    1626 .. 0.48
  11 !   17.0  21.8   1.5e-06    0.0054      27     146 ..    1630    1749 ..    1623    1759 .. 0.83
  12 ?   -4.6  28.5         5   1.8e+04      88     179 ..    1754    1849 ..    1745    1866 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00021
       ATG16  84 aqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklekENk 182
                   l++   e +  ++ + +++ +l+ +l++  ++ +e + +l+  e ++++l+ kl+++e el+e +++++++ DE   L+   +   e+l+klek+Nk
  CCD24756.1 722 NDLKN---EIQELQTSSRSSIDSLQLKLDTITKEFEETSGNLKTYELNNSNLQAKLSQLESELNEAKETLKKVNDECRELN---KLKNENLQKLEKDNK 814
                 34444...45555677889999**********************************************************9...5667899*******9 PP

       ATG16 183 e 183
                 +
  CCD24756.1 815 K 815
                 7 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.22
       ATG16  61 keasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaelea 130
                 ++++ +    k+++kiq+l++kl+++++el+ +  ++ +  + +++++  l  l ++ +e e +  +le+
  CCD24756.1 805 NLQKLE----KDNKKIQDLDTKLHKVQQELKISSEAKKKAHDDINKMSRDLIGLSREKQELEGKCGSLER 870
                 333333....477888888888888888888888888888888888888888888877777776666665 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00064
       ATG16  95 ksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklekE 180
                 +++++l+q+++e+++e+++l++kl+e ++++ +le+e+     +l+  + +++  ++lv +l + l +L   ++ +E+++  le++
  CCD24756.1 881 QEKNKLNQKIQEKSKEIETLNKKLEELKNNITSLEKEKDGTALALQHWKSKFESHDALVPKLTEKLKSLATSFKLLEKEKLALEND 966
                 57899*************************************************************************99988876 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00025
       ATG16   15 kafaeliqaynrLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneel 111 
                  + +ae+ +a  ++ +  ++l++e+++l ++ ++ k+   s+k ++e+++ +++     +a  ++le+ ++ ++e+l+el  +++e  q+l +l+e+l
  CCD24756.1  976 HQNAEFQKAIGDITKERDLLRSEKETLVANFSQLKE--LSDKLKTENSDHSAA----YEAVKNELEESMLHMNEQLKELETEKAEGDQKLANLEEKL 1066
                  556666667777777777777777777555444443..333333333333333....5556666666666666666666666666666666666666 PP

       ATG16  112 qkleeklkedeerlaeleaeraaletklkdreeelrekeklvq..............dlqDElsaLqlqlnqaEeklrklekEN 181 
                     +++l+ ++++l +l +  a+ +++l   ee++  +++  +              +lq El   +lq   aE +l +++kE 
  CCD24756.1 1067 NMMKKQLEDKDQQLTKLCEGEANNKKQLVTAEETISSLKADKEtfmekleasgleveKLQTELKDTKLQHGEAETRLTNMKKEH 1150
                  666666666666666666666666666666665555444433344446666666666*************************96 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.034
       ATG16   53 sskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrek 149 
                  ++++ ++ k+     ++++  +k++++  ++ +l++el+++  ++ge ++rl+++++e+++++   +e+  +l+e  ++ + + +k k ++eel+ek
  CCD24756.1 1097 AEETISSLKA-----DKETFMEKLEASGLEVEKLQTELKDTKLQHGEAETRLTNMKKEHADKDIANNEKICSLEEDLKKQQIVMDKEKANAEELEEK 1188
                  2222222222.....44455889999999***********************************999999999999999999999999999999998 PP

  == domain 6  score: 4.8 bits;  conditional E-value: 0.008
       ATG16   68 snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdre....eelrekeklvqdlqDEl 160 
                     k++a+ ++le+kl +  +ela++++ ++  ++ l+e +e++++l+++l++ +e+l++ e e ++l+++l + +    ee+  +e+++++l+ E 
  CCD24756.1 1174 VMDKEKANAEELEEKLNEKETELADVLRNKAAIEKELTESSEKIKTLNAELEALTEKLNQNEMEAEKLRENLLKDQnaskEEISALENTLKELHSEK 1270
                  4556789999**********************************************************99986655122256666777777888888 PP

       ATG16  161 saLqlqlnqaEeklrklekE 180 
                  ++   + +++E+  + le+E
  CCD24756.1 1271 ETQMEEKSKLESDIKSLETE 1290
                  88888888888888887776 PP

  == domain 7  score: 5.2 bits;  conditional E-value: 0.006
       ATG16   70 skqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlq 166 
                  ++++++i++le++l++l +e ++   ++++l++ +++l++el++ ++k    ++++++l++++++++++ kd ++ ++  +  ++    +l  L+ +
  CCD24756.1 1250 NASKEEISALENTLKELHSEKETQMEEKSKLESDIKSLETELDETKKKH---ASEIESLHEQIEKINEETKDFKAIIEKAASNLKRTESDLKVLKEK 1343
                  5677899999999999999999999999999999999999999888775...567899999999999999999999999999999999999999999 PP

       ATG16  167 lnqaEeklrkl 177 
                  ++++Eekl+ +
  CCD24756.1 1344 YTKNEEKLKIM 1354
                  99999999865 PP

  == domain 8  score: -6.4 bits;  conditional E-value: 5
       ATG16   36 aenaklekaaasaks..sksskksakekeasasq......snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeer 124 
                  +e++kle+ ++s ++  ++++kk a+e e+  +q      ++++ +a i++ +++l+++ ++l+ l  + ++++++l+ ++ + ++  e  k++e++
  CCD24756.1 1275 EEKSKLESDIKSLETelDETKKKHASEIESLHEQiekineETKDFKAIIEKAASNLKRTESDLKVLKEKYTKNEEKLKIMEVASKEHAELKKKQESE 1371
                  444455444444444432222222333332222255566677889999************************************************* PP

       ATG16  125 laeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklr....klekE 180 
                   + le++ + le+ +k +e+el e +k + + q+   + +++l ++ ++      kle+E
  CCD24756.1 1372 YELLENRLKMLEEDVKLKEKELSEHKKSLLEAQEQEKSSTIELAKLKSAAAdeknKLEEE 1431
                  **************************9999999988888888876544332222267666 PP

  == domain 9  score: -2.5 bits;  conditional E-value: 1.4
       ATG16   95 ksrgelaqrllelneelqkleeklkedeerlaeleaera.aletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklr.klekENkeL 184 
                   ++++l++ +++ + el+ + +  +++++ l+e +++++ + ++k++++e++l+  + ++q   +El++L+  +  +E k+  +l+kE ++ 
  CCD24756.1 1423 DEKNKLEEEIKSCKVELKNKAQAFEKERKLLNEGSSSITkEYSEKVSELEDKLEAVNSAHQSKLEELDSLKTNMIELENKNSeQLKKEKASI 1514
                  5678899999999999999999999999999998887762699***********************************99865899998766 PP

  == domain 10  score: 8.8 bits;  conditional E-value: 0.00049
       ATG16   74 akiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqa 170 
                  a+i  le+++++++++  +l+ + ++++++ ++ n+ l k   kl+e++++ +   ++ +++e+ +++++ e++   k +++l  El + ql+l+ +
  CCD24756.1 1512 ASIVILEETISKQKKDIDNLHSEVEDSQEKCKNINKDLTK---KLREMQSASETYDSNLKRMEETIEEKNVEIEKSSKSIEELEKELGSQQLKLKDL 1605
                  4445555555555555555555555555555555544333...333333333334444444555555555555555555555555555555555555 PP

       ATG16  171 EeklrklekENkeLve 186 
                    ++ ++ k Nk+ ++
  CCD24756.1 1606 QNENTEVIKKNKDILD 1621
                  5555555555555444 PP

  == domain 11  score: 17.0 bits;  conditional E-value: 1.5e-06
       ATG16   27 Lldrtsaleaenaklekaaasakssksskksakekeasasq...snskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklke 120 
                  L ++ ++l++en++l+k+a + ks+ s++  a + ++   +   + +++++++++l+++laq+++e +++ ++ ++l++r+ +++e  ++ +++ k 
  CCD24756.1 1630 LKEKNESLSEENETLSKSADQLKSEVSKRDEALKISK---KvidEYKVKDEQLSKLQSQLAQVNKEYSDSKQAMEDLQKRIGDAEENTKQFNNTKKD 1723
                  7788899999999997777777763333333333333...25558999************************************************* PP

       ATG16  121 deerlaeleaeraaletklkdreeel 146 
                  de ++++le+e+++++ kl+  e  +
  CCD24756.1 1724 DEDKIKQLEKEVEDMKAKLELSESSV 1749
                  ******************99887766 PP

  == domain 12  score: -4.6 bits;  conditional E-value: 5
       ATG16   88 eelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrek....eklvqdlqDElsaLqlqlnqaEeklrklek 179 
                     +el k  +++++ ll+ +e  qk+e+++++ e + + + +e+++le+kl++  ++   k    +k +++++DEl++L+ +l+ +Ee+++k ++
  CCD24756.1 1754 LKISELEKIIEDNKEILLAEKEVNQKQEKSIQSLELEKKTVVEEKRKLEEKLDEESAQHIKKtetfAKENEEQKDELETLKEKLKTLEEQNQKFKN 1849
                  55566777777777777777777888888888888888888888888888888777665555111145677*********************8874 PP

>> YdaT_toxin  Putative bacterial toxin ydaT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00053       1.9      12      79 ..     147     222 ..     141     230 .. 0.76
   2 ?   -3.4   0.0       4.2   1.5e+04      47      69 ..     766     788 ..     764     802 .. 0.75
   3 ?   -1.3   0.0      0.96   3.5e+03      51      69 ..    1682    1700 ..    1671    1705 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00053
  YdaT_toxin  12 frwLdsdseaarekvreLtPailavLPleyrarllnvdsfmsrlavlekeiseak..vavllg......apkhqki 79 
                   +L+++  + r +  +L+ a++a  Pl  r+ +++  +  s +  l  +i e     a+ll       +p+ qk+
  CCD24756.1 147 ISFLETENFHIRLYTIQLLEAVMATRPLKARSAIISLPTSISTIVNLLDDIHEPVrdEAILLLmavvndSPHVQKL 222
                 5689999999**************************9999999998888777643123444332344446666666 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.2
  YdaT_toxin  47 nvdsfmsrlavlekeiseakvav 69 
                 n+  ++ +l++le e+ eak  +
  CCD24756.1 766 NNSNLQAKLSQLESELNEAKETL 788
                 55567789999999999998765 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.96
  YdaT_toxin   51 fmsrlavlekeiseakvav 69  
                  ++s+la+++ke s+ k+a+
  CCD24756.1 1682 LQSQLAQVNKEYSDSKQAM 1700
                  57899***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1914 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4145  (0.23119); expected 358.6 (0.02)
Passed bias filter:                      761  (0.0424452); expected 358.6 (0.02)
Passed Vit filter:                       491  (0.0273858); expected 17.9 (0.001)
Passed Fwd filter:                       180  (0.0100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 9.01u 0.53s 00:00:09.53 Elapsed: 00:00:01.44
# Mc/sec: 4018.41
//
Query:       CCD24757.1  [L=803]
Description: hypothetical protein NDAI_0D04430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-16   59.1   0.1    1.6e-05   25.1   0.1    3.5  3  Ank_5      Ankyrin repeats (many copies)
    4.4e-15   55.8   1.6    1.2e-07   32.1   0.1    3.3  2  Ank_4      Ankyrin repeats (many copies)
    8.4e-13   48.7   0.1    5.2e-05   23.8   0.2    3.0  2  Ank_2      Ankyrin repeats (3 copies)
    1.5e-09   37.3   0.7      0.036   14.6   0.0    4.8  4  Ank_3      Ankyrin repeat
    7.3e-09   35.7   3.7      0.001   19.4   0.2    4.5  4  Ank        Ankyrin repeat
    3.8e-08   33.1   1.8    1.3e-07   31.4   0.3    2.7  2  KilA-N     KilA-N domain
  ------ inclusion threshold ------
      0.056   13.7   1.8        3.9    7.9   0.7    2.7  2  DUF4061    Domain of unknown function (DUF4061)
       0.11   12.6   3.4       0.34   11.1   3.4    1.8  1  Fib_alpha  Fibrinogen alpha/beta chain family
       0.14   12.1   1.5       0.41   10.6   1.5    1.9  1  DUF4446    Protein of unknown function (DUF4446)


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.3e-08   2.5e-05      10      53 ..     415     456 ..     412     456 .. 0.92
   2 ?    5.2   0.0     0.014        28       9      28 ..     482     501 ..     477     513 .. 0.83
   3 !   25.1   0.1   7.9e-09   1.6e-05       8      52 ..     529     573 ..     524     576 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.3e-08
       Ank_5  10 nrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltal 53 
                  +++++  +++h+A++ g +++++ L++ ga++++t+s+G+t+l
  CCD24757.1 415 IDSEQH--SAFHWACSMGQLSIAEALFNAGANIRATNSEGQTPL 456
                 566677..9**********************************8 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.014
       Ank_5   9 vnrldgggntpLhvAakyga 28 
                 v ++d++g+t+Lh+ +k+ +
  CCD24757.1 482 VFDEDRHGQTVLHHIIKRKS 501
                 6799**********999765 PP

  == domain 3  score: 25.1 bits;  conditional E-value: 7.9e-09
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGlta 52 
                   n++d++gnt+Lh+Aa +g  + ++ L+ +g+ l++++++G+t+
  CCD24757.1 529 LMNAQDENGNTALHLAALNGDKRFFNTLISNGSLLTIQNKEGRTP 573
                 5699****************************************9 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.1     6e-11   1.2e-07       2      47 ..     420     464 ..     419     479 .. 0.91
   2 !   21.5   0.1   1.3e-07   0.00026       4      55 .]     492     557 ..     489     557 .. 0.69

  Alignments for each domain:
  == domain 1  score: 32.1 bits;  conditional E-value: 6e-11
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgn 47 
                 ++a+h+a+++g+l +++ L++ ga+i a+ n++G+t+l + a++ n
  CCD24757.1 420 HSAFHWACSMGQLSIAEALFNAGANIRAT-NSEGQTPLMRSAMFHN 464
                 589**************************.************9998 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 1.3e-07
       Ank_4   4 aLhyaai.....sgrlelvrlLlekgad..........inaqdnrsGetalhiAakrgnveilklLl 55 
                 +Lh+ ++      + + ++++ l + +d           naq +++G+talh Aa++g+++++  L+
  CCD24757.1 492 VLHHIIKrksttPSAVYYLDIFLGSLKDfaqpygidllMNAQ-DENGNTALHLAALNGDKRFFNTLI 557
                 566666664444444445555555555555555555999***.****************99887665 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.7e-07   0.00033      12      64 ..     396     463 ..     381     468 .. 0.72
   2 !   23.8   0.2   2.6e-08   5.2e-05      12      81 ..     474     565 ..     464     567 .. 0.65

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.7e-07
       Ank_2  12 lvklLl.egadpn....k....ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsg 64 
                 + + Ll    d      +    + ++a h+A++ g+l i+++L ++      ++++g+tpL+ +a + 
  CCD24757.1 396 VADELLrPPPDSApfidSpidsEQHSAFHWACSMGQLSIAEALFNAganiraTNSEGQTPLMRSAMFH 463
                 5566665222211123213345789*******************966567766699******999774 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 2.6e-08
       Ank_2  12 lvklLlegadpn.k.ngktaLhyAakngnle...............ivklLleh............adndgrtpLhyAarsghleivklLlekgadinl 81 
                 ++klL+ ++ ++ +  g+t+Lh+ +k+ ++                       +            +d++g+t+Lh+Aa +g  ++++ L+ +g+ +++
  CCD24757.1 474 IFKLLH-ETVFDeDrHGQTVLHHIIKRKSTTpsavyyldiflgslkD------FaqpygidllmnaQDENGNTALHLAALNGDKRFFNTLISNGSLLTI 565
                 445555.4444433579*********987634444444444444330......13444544554447799*********************88876665 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.8e-05     0.036       3      30 ..     420     446 ..     418     447 .. 0.91
   2 ?    2.4   0.0      0.17   3.4e+02       1      14 [.     451     465 ..     451     480 .. 0.69
   3 ?    1.9   0.0      0.26   5.1e+02       1      16 [.     488     503 ..     488     513 .. 0.79
   4 !   12.5   0.1   8.8e-05      0.18       1      23 [.     536     558 ..     536     563 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                  +++h+A++ g l+i+++L++  ga+++
  CCD24757.1 420 HSAFHWACSMGQLSIAEALFN-AGANIR 446
                 699******************.8**997 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.17
       Ank_3   1 nGetpLh.lAarsgn 14 
                 +G+tpL+  A+ +++
  CCD24757.1 451 EGQTPLMrSAMFHNS 465
                 69*****44444444 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.26
       Ank_3   1 nGetpLhlAarsgnle 16 
                 +G+t Lh+ ++  +++
  CCD24757.1 488 HGQTVLHHIIKRKSTT 503
                 79******99887764 PP

  == domain 4  score: 12.5 bits;  conditional E-value: 8.8e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLle 23 
                 nG+t+LhlAa++g+      L+ 
  CCD24757.1 536 NGNTALHLAALNGDKRFFNTLIS 558
                 7************9988888887 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0015       2.9       4      31 ..     421     449 ..     419     450 .. 0.90
   2 ?    4.2   0.0     0.033        65       2      14 ..     452     464 ..     451     480 .. 0.68
   3 ?    0.9   0.0      0.37   7.3e+02       1      13 [.     488     500 ..     488     519 .. 0.76
   4 !   19.4   0.2   5.3e-07     0.001       1      31 [.     536     567 ..     536     568 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0015
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 ++ H+A++ g+++i+++L   GAn+ a++
  CCD24757.1 421 SAFHWACSMGQLSIAEALFnAGANIRATN 449
                 789****99********9977****9988 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.033
                 SBBHHHHHHHHTT CS
         Ank   2 GnTPLHlAatngk 14 
                 G TPL++ a++ +
  CCD24757.1 452 GQTPLMRSAMFHN 464
                 9*****9885443 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.37
                 TSBBHHHHHHHHT CS
         Ank   1 dGnTPLHlAatng 13 
                 +G T+LH  + ++
  CCD24757.1 488 HGQTVLHHIIKRK 500
                 69*****856544 PP

  == domain 4  score: 19.4 bits;  conditional E-value: 5.3e-07
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +GnT+LHlAa ng+kr    L+ +G+ l++++
  CCD24757.1 536 NGNTALHLAALNGDKRFFNTLIsNGSLLTIQN 567
                 8*********************7795568887 PP

>> KilA-N  KilA-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.3   6.7e-11   1.3e-07       7     101 ..      24     100 ..      20     104 .. 0.86
   2 ?   -3.5   0.1       4.5     9e+03      30      42 ..     712     724 ..     695     746 .. 0.58

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 6.7e-11
      KilA-N   7 eiiirrvkdgyinatkllkaa.aedtkriddWlrnkstkelleeleedynisekkksektisenrkakpgrlqGtYvhpdlalava.sW.ispefalk 101
                 + ++ r++d+++nat++lk a  +++kr +++l+++  ke +e+++                       g++qGt+v+ ++al++a ++ +++e +++
  CCD24757.1  24 GSVMKRKSDDWVNATHILKVAnFSKAKR-TRILEKEVLKETHEKVQGG--------------------FGKYQGTWVPMNIALNLAeKYgVYDELKVF 100
                 56787878*************7667777.9****************76....................2679**************988888887775 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.5
      KilA-N  30 dtkriddWlrnks 42 
                 +tkr+d++++ +s
  CCD24757.1 712 ETKRLDHFMKENS 724
                 4555555555333 PP

>> DUF4061  Domain of unknown function (DUF4061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.031        62      52      88 .]     625     661 ..     616     661 .. 0.86
   2 ?    7.9   0.7    0.0019       3.9      31      71 ..     684     725 ..     676     747 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.031
     DUF4061  52 daeeeelaekeedalresdenlkkLvskLeqLsksIe 88 
                  ++++  a+  +d+ +++de+ k Lv+ L+++s++I+
  CCD24757.1 625 TNAMKRIADAYNDSYAQRDEEEKALVKTLKSISTTID 661
                 5666777778889999******************996 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0019
     DUF4061  31 leqleeiReqQekLarlhfeldaeeeelaekeedalr.esde 71 
                  +ql+++ e Q ++arl+ e++++ e  + k+ d++  e+++
  CCD24757.1 684 EKQLKDVEELQRSIARLKKEMESKLEYRETKRLDHFMkENSD 725
                 589**********************99998887777533333 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   3.4   0.00017      0.34      29     119 ..     613     705 ..     603     718 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00017
                 CCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHCC.CHHHHHHHCCHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  29 yekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn.dnvikksskeleeei.lrlketidaqesnirvLqnvlesneqkiq 119
                   +++++ + +++n +++i++ +++++    e ++ l ++ ks + + dn+  k ++ l++e   +l+  i +q + +++Lq  + +++++++
  CCD24757.1 613 AATTISRGIPNITNAMKRIADAYNDSYAQRDEEEKALVKTLKSISTTiDNIDGKTTEVLDNERgKDLDTLIEKQLKDVEELQRSIARLKKEME 705
                 5678899999*********************************99889***********9765277999999999****************96 PP

>> DUF4446  Protein of unknown function (DUF4446)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.5   0.00021      0.41      21      70 ..     657     706 ..     626     731 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
     DUF4446  21 lvklkklkkkykklmkgkdgksleellkekleeveelkeeseelekeiee 70 
                 ++ + +++ k ++++ +++gk+l++l++++l++veel+++ ++l+ke+e+
  CCD24757.1 657 STTIDNIDGKTTEVLDNERGKDLDTLIEKQLKDVEELQRSIARLKKEMES 706
                 56678888999999*******************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1394  (0.0777511); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 5915.22
//
Query:       CCD24758.1  [L=361]
Description: hypothetical protein NDAI_0D04440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-54  183.6   0.0    6.2e-54  183.2   0.0    1.1  1  NTP_transferase  Nucleotidyl transferase
    1.6e-10   40.3   7.5      2e-08   33.6   2.9    3.5  3  Hexapep          Bacterial transferase hexapeptide (six repea
    5.3e-10   39.9   0.0      7e-10   39.5   0.0    1.2  1  NTP_transf_3     MobA-like NTP transferase domain
    0.00072   19.3   5.5     0.0024   17.6   0.7    3.1  4  Hexapep_2        Hexapeptide repeat of succinyl-transferase
  ------ inclusion threshold ------
      0.021   13.0   0.6      0.031   12.4   0.6    1.2  1  DUF4954          Domain of unknown function (DUF4954)
      0.027   13.4   0.0       0.21   10.5   0.1    2.0  2  Fucokinase       L-fucokinase
      0.095   12.6   0.0       0.15   11.9   0.0    1.3  1  CTP_transf_3     Cytidylyltransferase


Domain annotation for each model (and alignments):
>> NTP_transferase  Nucleotidyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.2   0.0   2.4e-57   6.2e-54       1     242 [.       2     230 ..       2     236 .. 0.92

  Alignments for each domain:
  == domain 1  score: 183.2 bits;  conditional E-value: 2.4e-57
                      EEEEE--S--GGGTTCCTTSSGGGSEETTETETTHHHHHHHHHTT-SEEEEEEETTTHHHHHHHHTTSGGGTSEEEEEEESS--BGGHHHHHTH CS
  NTP_transferase   1 kavILaGGsGtRLwPLtrtlakklvpvlgkerliqatlsrlansgieeiivvltqehsflveeqlkegskfgvevlialepegkgtAdAvalaa 94 
                      k++IL+GG+GtRL+PLt t++k+lv +++  ++i +++++lan+g+++i++ ++++ + +ve+  k ++++gv++++++e+e+ +tA++++la+
       CCD24758.1   2 KGLILVGGYGTRLRPLTLTVPKPLVEFGNR-PMILHQIEALANAGVTDIVLAVNYRPEVMVETLQKYEKEYGVNITFSVEEEPLDTAGPLKLAE 94 
                      689***************************.*************************************************************** PP

                      HHHTTSSE..EEEEETTEEEESTTHHHHHHHHHTHSSTTSEEEEEEESS-CTTSEEEEEC..TTSBEEEEECS-SSHSHCSEECCSEEEEETTH CS
  NTP_transferase  95 elledeksdelvlvLggDhlikdayeeavkkaiekaakgtvtfgivpveeateyGviead..eegrverfvEKPkeakaselassGiYvfnsev 186
                      ++l++++s   ++vL++D+++++ ++e+ +++++++   + t+++++v+e+++yGvi +d    + + rfvEKPke    + +++GiY+ n+ev
       CCD24758.1  95 KILKKDDS--PFFVLNSDVICEYPFKELADFHKAHGG--KGTIVATKVDEPSKYGVIVHDiaTPNLIDRFVEKPKEFV-GNRINAGIYILNPEV 183
                      ******98..9**************************..89*******************754459************.9************** PP

                      HHHHHHCCHHHTTSSCHHHHHHHHHHHTTEEEEEECSTTEE-EEEXSSHHHHHHHH CS
  NTP_transferase 187 llflakdleelkrgedeitdilpkaleegkvalaflfkdaeyWsDvGtldsllean 242
                      ++ +     e+ + ++  ++++p +++e k  ++f+ ++   W+DvG+++++l  +
       CCD24758.1 184 IDLI-----EM-KPTSIEKETFPILVNE-KSLYSFDLEG--FWMDVGQPKDFLSGT 230
                      ****.....33.3345556677777766.68889*****..6*********99765 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   2.9   7.8e-12     2e-08       8      35 ..     267     294 ..     248     295 .. 0.91
   2 !    6.5   0.0    0.0028       7.1      18      35 ..     305     322 ..     300     323 .. 0.84
   3 !    6.0   0.1    0.0041        11      20      35 ..     307     322 ..     306     335 .. 0.61

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 7.8e-12
                 EEE-TTEEEETTEEE-TTEEEETTEEEE CS
     Hexapep   8 vlIgpfaviggnVkIGdnvkIgagvvig 35 
                 ++Igp++vig+nV+IGd+v+I++ vv++
  CCD24758.1 267 AKIGPNVVIGPNVTIGDGVRIERSVVLA 294
                 79***********************997 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0028
                 TTEEE-TTEEEETTEEEE CS
     Hexapep  18 gnVkIGdnvkIgagvvig 35 
                   +++G n+++g+++++ 
  CCD24758.1 305 KSTIVGWNSTVGRWCRLE 322
                 5789*********99886 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0041
                 EEE-TTEEEETTEEEE CS
     Hexapep  20 VkIGdnvkIgagvvig 35 
                 +++G n+++g+++++ 
  CCD24758.1 307 TIVGWNSTVGRWCRLE 322
                 4566666666666554 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   2.7e-13     7e-10       1     127 [.       3     141 ..       3     207 .. 0.76

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 2.7e-13
                   EEEEEESS-TTTTT.....THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSH.C.....HHHHHHTTCTS-E..EE-TTS..S-SHHHHHHHHHHH CS
  NTP_transf_3   1 aviLAGGrSsRmgg.....dKallplggkpllervldalraagvdevvvvggd.e.....evlaalarlgvrv..vededp..gkgplaslaaalra 82 
                   ++iL GG ++R+       +K+l+++g++p++ ++++al+ agv ++v+++++ +      ++++ +++gv +   ++e+p   +gpl+     l++
    CCD24758.1   3 GLILVGGYGTRLRPltltvPKPLVEFGNRPMILHQIEALANAGVTDIVLAVNYrPevmveTLQKYEKEYGVNItfSVEEEPldTAGPLKLAEKILKK 99 
                   69**********8344568**********************************53443322222334556554224444454358998888888886 PP

                   H.SSSCEEEEETT-TT--HHHHHHHHHCHHHHT.SSEEEEESSSEE CS
  NTP_transf_3  83 aadadavlvlacDmPlltpelverllaaaaasg.advvvptyeger 127
                     d+++++vl  D+++  +   ++l++ ++a+g + ++v+t  +e+
    CCD24758.1 100 --DDSPFFVLNSDVIC--EYPFKELADFHKAHGgKGTIVATKVDEP 141
                   ..79999999999987..5556777776666662345555555554 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.5   6.4e+03      26      32 ..     172     178 ..     171     179 .. 0.81
   2 ?   -2.5   0.0       1.7   4.4e+03       1       9 [.     191     199 ..     191     199 .. 0.87
   3 !   17.6   0.7   9.2e-07    0.0024       3      28 ..     268     295 ..     267     296 .. 0.91
   4 ?    2.3   0.1     0.054   1.4e+02       2      26 ..     307     333 ..     306     339 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.5
                 E-TT-EE CS
   Hexapep_2  26 vgaGvvi 32 
                 + aG++i
  CCD24758.1 172 INAGIYI 178
                 6799998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.7
                 .EEE-TT-E CS
   Hexapep_2   1 pviIGdnCl 9  
                 p++I++ ++
  CCD24758.1 191 PTSIEKETF 199
                 89***9987 PP

  == domain 3  score: 17.6 bits;  conditional E-value: 9.2e-07
                 EE-TT-EE-TT-EE..SEEE-TT-EE-T CS
   Hexapep_2   3 iIGdnCliGanagi..GvslGdncvvga 28 
                 +IG n++iG+n +i  Gv +++ +v+++
  CCD24758.1 268 KIGPNVVIGPNVTIgdGVRIERSVVLAN 295
                 79************888****9999987 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.054
                 EEE-TT-EE-TT-E.ES.EEE-TT-EE CS
   Hexapep_2   2 viIGdnCliGanag.iG.vslGdncvv 26 
                 +i+G n+ +G  +   G + lGd++ v
  CCD24758.1 307 TIVGWNSTVGRWCRlEGvTVLGDDVNV 333
                 567777777777774487889999866 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   1.2e-05     0.031     185     261 ..     249     322 ..     243     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.2e-05
     DUF4954 185 aglikNvkigdyatiegasklengtinSskeapveiGegViledfiissGskikdgavisrcfvGqavklkkqfsae 261
                 ++++ N+ i+++a+i+   k+    ++      v+iG+gV +e +++ + s+ik+ ++++ ++vG + ++++  ++e
  CCD24758.1 249 SNIVGNALIDPTAKISPLAKIGPNVVIG---PNVTIGDGVRIERSVVLANSNIKEHSLVKSTIVGWNSTVGRWCRLE 322
                 6788899999999999988887666654...4589******************************999999877665 PP

>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.084   2.2e+02      44     118 ..      96     165 ..      88     203 .. 0.76
   2 ?   10.5   0.1   8.1e-05      0.21     271     338 ..     282     347 ..     229     354 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.084
  Fucokinase  44 fpkrmkpGvlvtssDvlllf.dseeisfdka.gvtalavpstldigtnHGVfvlddqsseeeeleirsvkkflhKps 118
                 ++k+  + ++v++sDv+  +  +e ++f+ka g  +  v +++d  ++ GV+v d         + +++++f+ Kp 
  CCD24758.1  96 ILKKDDSPFFVLNSDVICEYpFKELADFHKAhGGKGTIVATKVDEPSKYGVIVHDIA-------TPNLIDRFVEKPK 165
                 555556678999999998775566778888775566666667778888888888877.......3466777777765 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 8.1e-05
  Fucokinase 271 kesavvinSvlessvsvgegsviehsslkgnvsigsnsivsglelesseeslelpddtilqtlslkls 338
                  +++ +  Sv+  + +++e+s++++  ++ n ++g ++ + g+ +  +  +++++d++ +++ ++  +
  CCD24758.1 282 GDGVRIERSVVLANSNIKEHSLVKSTIVGWNSTVGRWCRLEGVTVLGD--DVNVKDEIYINGGKVLPH 347
                 67888999**************************************87..799**9999988777665 PP

>> CTP_transf_3  Cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.9e-05      0.15      16      46 ..      23      52 ..      21      82 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.9e-05
                  GGGSEETTEEHHHHHHHHHHHTTTTSEEEEE CS
  CTP_transf_3 16 Knlldlggkpliayvleaalkskafekviva 46
                  K+l ++g++p+i + +ea+ ++++ +++++a
    CCD24758.1 23 KPLVEFGNRPMILHQIEALANAGV-TDIVLA 52
                  9********************999.555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       311  (0.0173462); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.35
# Mc/sec: 3049.81
//
Query:       CCD24759.1  [L=309]
Description: hypothetical protein NDAI_0D04450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-26   90.7  22.5    9.5e-26   90.7  22.5    2.2  2  FA_hydroxylase  Fatty acid hydroxylase superfamily


Domain annotation for each model (and alignments):
>> FA_hydroxylase  Fatty acid hydroxylase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.9     0.052   9.3e+02      49      74 ..      43      68 ..      16     109 .. 0.54
   2 !   90.7  22.5   5.3e-30   9.5e-26       2     133 .]     146     282 ..     145     282 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.052
  FA_hydroxylase 49 plealllallllllllllgplsalll 74
                    +  ++  + l++ l+++l +  ++++
      CCD24759.1 43 WYIYMQNDTLATGLMFFLLHEFMYFF 68
                    22222222333333322222222222 PP

  == domain 2  score: 90.7 bits;  conditional E-value: 5.3e-30
  FA_hydroxylase   2 llallledfveYwvHrllHrvkllwrrlHkvHHsseaptalaalrahpleallla.llllllllllg...plsalll..vlvlaallelliHsgl 90 
                     +l+++led+++Yw+Hrl+H  + +++ +Hk+HH++ ap  l+a++ahp+e++ l+  ++ ++++++    +l++++l  +++l+ ++++  Hsg 
      CCD24759.1 146 TLFFILEDIWHYWLHRLFHY-SYFYKYIHKQHHRYAAPFGLVAEYAHPIETMSLGfGTVGMPIFYVMytgRLHLFTLccWITLRLFQAVDAHSG- 238
                     689****************6.67********************************666667775555556666666666***************. PP

  FA_hydroxylase  91 hvslgwll...erllatpraHrlHHskneegnfgvllslwDrlfgT 133
                      ++++w l   + + a++++H+lHH+++  gn+++++++wD+ + T
      CCD24759.1 239 -YDFPWSLnkfMPFWAGAEHHDLHHHYFI-GNYASSFRWWDYYMDT 282
                     .9*****965533379*************.************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 2601.77
//
Query:       CCD24760.1  [L=530]
Description: hypothetical protein NDAI_0D04460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-11   41.5  28.2      2e-10   40.1  28.2    1.8  1  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.44   10.1   7.4        0.7    9.4   3.8    2.7  2  BCLP      Beta-casein like protein


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1  28.2   2.3e-14     2e-10       3     351 ..      34     472 ..      32     474 .. 0.70

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 2.3e-14
       MFS_1   3 laaflsalarsilgpalpl.alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll..f...a.ss.......... 84 
                 +++f ++++ +i++++l +   +++l++s  +i+++ ++  lg+ ++ ++lG ++d++G+  + +l++l+f+ + ++l   f   + ++          
  CCD24760.1  34 FSLFSAITSGFITLISLYSqPWQTHLHYSSWQINMISSVTNLGMYLTPPILGIIADNHGPITLSCLSILGFIPSYAYLGhiFynpPpHNsitnseplss 132
                 6677777777777777766699****************************************************5555567655413225666788888 PP

       MFS_1  85 .lw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgg..llasslg.............................W 150
                  ++ l l++ ++ G+ ++al+ ++++  ++++p  ++ + i+l +++f++++++g  l    +    ++                             +
  CCD24760.1 133 lSFnLTLLCFMIIGISTSALYFSALITCTKLYPT-KKLLSISLPTTSFGISSLVGSQLLRipW----FWsipssssssfsstaietdkilnlgrvfhtF 226
                 87779****************************9.********************66655343....33344477889999999999999976765555 PP

       MFS_1 151 ravfyilaivsllafvlfllll.........peepperkrkspkeee..........................................kgtgpaplvp 198
                  ++++i++i++ +a     + +                                                                   +     ++ p
  CCD24760.1 227 AWLYVIIGIFAWVATG--TVSMlncskeeelQ--------------IeqnyhssvnkyqdreqqpllsngtnsdysssgsniinevqteQ-----EIEP 304
                 5555555555555422..11113455555553..............03333444455555577888888888888898888888665431.....2222 PP

       MFS_1 199 ....awkallkdpvlwillialllfffgfsglltllplylqevlgls....glllaglllallalvgailallagrlsdrlgr....rrrlllalllll 285
                         ++kdp  ++l i++ll    + +++t + ++ +          +  l++ +l+++a+ +  ++l +g  +d ++r     + lll+ll+l 
  CCD24760.1 305 iksnSMVTIFKDPLTYVLAISMLLSLGPLEMFVTNMSSLSHL----LikheTTTLSSQILSIYAFSSTLARLSTGLTMDLFSRykisLKWLLLSLLSLG 399
                 333445567777733224444444434444466666663222....13344347888888888888888899999999998876655444444444444 PP

       MFS_1 286 laalglallavt.......ssavllll......vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggal 351
                 l++ +l+l  +t              +      +++l+G  +g  f+++ +++   ++++  gta+g  ++a ++g+++
  CCD24760.1 400 LFSQALILHFTTgattstvI------AstdllfMSILLGQVYGGLFTIYPTITLVIYGEKLFGTAYGSLMVAPAIGSIV 472
                 44444444444455443333......24566668888***********************************9999987 PP

>> BCLP  Beta-casein like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.041   3.6e+02      25      56 ..      17      48 ..      14      52 .. 0.89
   2 ?    9.4   3.8   7.8e-05       0.7      26      97 ..     343     415 ..     334     431 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.041
        BCLP 25 vlrhvskkkkavtleyavsnviavvsgllsii 56
                +l hv +k++ + + y  s   a++sg+++ i
  CCD24760.1 17 ILPHVLSKSSSRRVAYLFSLFSAITSGFITLI 48
                78999999999********999****999876 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 7.8e-05
        BCLP  26 lrhvskkkkavtleyavsnviavvsgllsiisGivaivlsrnlkn.kklqwallvlsllaallsaacavgLlv 97 
                 l h+  k++++tl+  + ++ a  s+l   ++G++  + sr++ + k l ++ll+l+l +  l +  + g + 
  CCD24760.1 343 LSHLLIKHETTTLSSQILSIYAFSSTLARLSTGLTMDLFSRYKISlKWLLLSLLSLGLFSQALILHFTTGATT 415
                 7899999**********************************97531334444555555444444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4319.93
//
Query:       CCD24761.1  [L=156]
Description: hypothetical protein NDAI_0D04470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1915  (0.10681); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1328.44
//
Query:       CCD24762.1  [L=266]
Description: hypothetical protein NDAI_0D04480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-33  115.0   0.0    2.7e-33  114.5   0.0    1.3  1  Acyltransferase  Acyltransferase
  ------ inclusion threshold ------
      0.091   12.0   0.0       0.17   11.1   0.0    1.4  1  Glyco_trans_1_3  Glycosyl transferase family 1
       0.11   12.3   0.1       0.41   10.5   0.1    1.9  2  GST_C_6          Glutathione S-transferase, C-terminal domain
       0.13   12.3   0.0       0.26   11.2   0.0    1.5  1  DUF5402          Family of unknown function (DUF5402)


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.5   0.0     6e-37   2.7e-33       2     134 ..      61     188 ..      60     189 .. 0.96

  Alignments for each domain:
  == domain 1  score: 114.5 bits;  conditional E-value: 6e-37
  Acyltransferase   2 vrvtglenlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegkl. 94 
                      v+v  +enl++  p+i+v+NHqs lD+l+l  l+     p+ + i akk+l+++p+lg++m l+g+ f+dR+++ +  ++l+n + +++++k  
       CCD24762.1  61 VKVIDEENLKN-LPFIVVSNHQSMLDILMLGKLF-----PPGCTITAKKSLKYVPFLGWFMALSGTLFLDRSNRTKSVTTLHNGLTKIRNNKRa 148
                      68889999996.**********************.....9**********************************************99999999 PP

  Acyltransferase  95 vviFPEGtrsregel..lpfkkGlvrlaakakkgvpivPvai 134
                      ++iFPEGtrs+++ l  lpfkkG+++la++   ++pivPv++
       CCD24762.1 149 IWIFPEGTRSHTTDLemLPFKKGAFHLAQQG--KLPIVPVVV 188
                      ************88888**************..*******86 PP

>> Glyco_trans_1_3  Glycosyl transferase family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.7e-05      0.17      54     129 ..     119     196 ..      99     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.7e-05
  Glyco_trans_1_3  54 glsivyeenrvrklktllknlqvaaklaknvkalvelvedfrpdlvvtDFealtallakrhkLPvisv..dnqqvvnr 129
                      g  +  + nr +++ tl + l+ +++ ++ +  + e ++++  dl +  F   + +la++ kLP++ v   n  +++ 
       CCD24762.1 119 GTLFLDRSNRTKSVTTLHNGLTKIRNNKRAIWIFPEGTRSHTTDLEMLPFKKGAFHLAQQGKLPIVPVvvANTSTIKS 196
                      55567789*********************************************************8641156666665 PP

>> GST_C_6  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   9.2e-05      0.41      28      63 ..      21      58 ..      21      59 .. 0.90
   2 ?   -1.8   0.0      0.61   2.7e+03      14      35 ..      71      93 ..      66     105 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.2e-05
     GST_C_6 28 AlvFGhlaqilytplespelrellk..eypNLvaycer 63
                ++++G++a+i+ t+++ ++l+++l+   y+N ++y+ +
  CCD24762.1 21 CAIYGVIASIVCTLIGKQHLAQYLTarCYSNAMKYIMN 58
                89***********************9778898888766 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.61
     GST_C_6 14 dkkyFfG.dkPtslDAlvFGhla 35
                + +++   ++ + lD l+ G l+
  CCD24762.1 71 NLPFIVVsNHQSMLDILMLGKLF 93
                55566654447889999999876 PP

>> DUF5402  Family of unknown function (DUF5402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.9e-05      0.26      28      72 ..     198     244 ..     184     253 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.9e-05
     DUF5402  28 evdifalrcGcvGil..ievrGlevddveifkekileklkelakdle 72 
                   +++ + c  v +l  +++ Gl+ dd+  f ek+++ +++ +k+l+
  CCD24762.1 198 KWKVYNTGCMVVKVLkpLSTEGLQKDDIPAFSEKVRDLMDKELKELG 244
                 456666666666666445899*******************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       896  (0.0499749); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1969.22
//
Query:       CCD24763.1  [L=279]
Description: hypothetical protein NDAI_0D04490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-23   80.6   0.0    1.9e-22   79.0   0.0    1.9  1  La        La domain
  ------ inclusion threshold ------
      0.061   13.1   0.3       0.16   11.8   0.3    1.7  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
       0.65   10.9   3.9        1.9    9.4   0.7    2.6  3  SCVP      Secreted clade V proteins


Domain annotation for each model (and alignments):
>> La  La domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   3.2e-26   1.9e-22       2      58 ..      30      84 ..      29      85 .. 0.95

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 3.2e-26
                HHHHHHHHHTT-TTT-HHHHHHHTTSTTS---HHHHHTSSHHHHHHSSHHHHHHHHH CS
          La  2 lkQvEfYFSdeNLpkDkFLrkkmdkdpegwVplsliasfkrmkkltkdveliaealr 58
                lkQvEfYFS++N p+DkFLr++ +k+ +gwVp+s+ia+f+rmkk++ +v++++e+l+
  CCD24763.1 30 LKQVEFYFSESNFPYDKFLRSTAEKN-DGWVPISTIATFNRMKKYR-PVDKVIEILK 84
                69*********************995.8*****************9.9*******98 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   2.6e-05      0.16      12      59 ..     141     188 ..     140     195 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHH CS
       RRM_1  12 eeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAleal 59 
                 +e+++ ++ +   ++ ++l +d ++k +g  +VeF++  d e+ ++++
  CCD24763.1 141 QENIENFLHDLANVNQVRLRKDHQKKFNGNVIVEFQTLNDCEDFKKKY 188
                 6889999999******************************99998865 PP

>> SCVP  Secreted clade V proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.078   4.7e+02      22      54 ..      28      59 ..      12      68 .. 0.76
   2 ?    9.4   0.7   0.00033       1.9      13      70 ..     132     186 ..     122     200 .. 0.79
   3 ?   -3.5   0.0         3   1.8e+04       6      18 ..     215     227 ..     202     239 .. 0.56

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.078
        SCVP 22 efekklkeyakslgisydkdlsdekvtnvnGkf 54
                +  k+++ y+++++ +ydk ++++++++++G +
  CCD24763.1 28 QCLKQVEFYFSESNFPYDK-FLRSTAEKNDGWV 59
                4445888999999*99975.9999999999975 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00033
        SCVP  13 psknksyldefekklkeyakslgisydk.dlsdekvtnvnGkfavtytlsnadCskvke 70 
                 + +   +  e++++++++ ++l  + ++ +l + ++++ nG++ v ++    dC+ +k+
  CCD24763.1 132 NVD--VEFIELQENIENFLHDLA-NVNQvRLRKDHQKKFNGNVIVEFQTL-NDCEDFKK 186
                 333..33336889**********.666669**************999994.79*99986 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3
        SCVP   6 vtnepydpsknks 18 
                  t++ +d ++++ 
  CCD24763.1 215 LTKKQFDLQREAT 227
                 3444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1031  (0.0575046); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2074.14
//
Query:       CCD24764.1  [L=270]
Description: hypothetical protein NDAI_0D04500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-51  173.7   8.6    2.7e-51  172.6   8.6    1.6  1  KRE9          Yeast cell wall synthesis protein KRE9/KNH1
    2.3e-10   41.1   0.3    2.3e-10   41.1   0.3    2.6  3  GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anc


Domain annotation for each model (and alignments):
>> KRE9  Yeast cell wall synthesis protein KRE9/KNH1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.6   8.6     3e-55   2.7e-51       1     101 [.     164     264 ..     164     265 .. 0.99

  Alignments for each domain:
  == domain 1  score: 172.6 bits;  conditional E-value: 3e-55
        KRE9   1 dsksftvpYtkQtgktrfAPmQtqPgtkvtattwsrrfptsavtyystlkksleqltTiTpgwsytltsavNyatpapfpsenGgwydpskrlslstrk 99 
                 ds+sftvpYtkQtgk+r+APmQ+qPgtk+ta++w+r+++tsavt+y++++ksl+q+tTiTpgwsy ++s+vNyat+apfps+nGgwydpskrlsl+trk
  CCD24764.1 164 DSRSFTVPYTKQTGKARYAPMQMQPGTKLTAKSWTRKYATSAVTFYTSMRKSLQQVTTITPGWSYAISSDVNYATHAPFPSDNGGWYDPSKRLSLTTRK 262
                 79************************************************************************************************* PP

        KRE9 100 ln 101
                 +n
  CCD24764.1 263 IN 264
                 98 PP

>> GPI-anchored  Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.3   2.5e-14   2.3e-10       3      92 ..      28     129 ..      26     130 .. 0.77
   2 ?    0.5   0.1      0.12   1.1e+03      38      72 ..     145     181 ..     141     201 .. 0.64
   3 ?   -0.4   0.2      0.22     2e+03      12      51 ..     189     226 ..     181     246 .. 0.57

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 2.5e-14
  GPI-anchored   3 Pssgevvtag....kpvtitWkdsgtdp.....gtvtlvLcagssnnlksvktiasgiknsd...gsytwtvpaslesggaYflqivsesne.giyn 86 
                   P+ ge+++ +     +++++W   +++p     +++t++Lc+g++ ++++++t+a+ ++ ++     y+ ++  +l+++g Y++qi  ++++  +++
    CCD24764.1  28 PEPGEKYDLSetgeVSIDLSWVYLDSTPskadiTSFTFSLCTGPNYKINCLATLAK-VSAAEvdsDIYKANILGTLGTDGVYYIQIFAQTESgYTIH 123
                   555555555543444578889887766667777************99*******73.3333233489********************777777**** PP

  GPI-anchored  87 ySdrFt 92 
                   yS++F 
    CCD24764.1 124 YSPKFY 129
                   *****7 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.12
  GPI-anchored  38 snnlksvktiasgiknsd.gsytwtvpaslesgga.Y 72 
                   s+++++++ i++g+ +++  s ++tvp + ++g+a Y
    CCD24764.1 145 SADPTPETRITTGAVGATiDSRSFTVPYTKQTGKArY 181
                   5567777888777776555666666665555555335 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.22
  GPI-anchored  12 gkpvtit.WkdsgtdpgtvtlvLcagssnnlksvktiasgi 51 
                   g+++t + W+ +    ++vt++    +s  l++v+ti+ g 
    CCD24764.1 189 GTKLTAKsWTRKY-ATSAVTFYTSMRKS--LQQVTTITPGW 226
                   5555543366532.23444444444433..67777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1956.81
//
Query:       CCD24765.1  [L=560]
Description: hypothetical protein NDAI_0D04510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-07   29.9  18.0    0.00051   20.7   0.7    4.9  4  zf-C2H2_4      C2H2-type zinc finger
    0.00013   21.9   7.5    0.00042   20.2   0.2    3.0  3  zf-C2H2_6      C2H2-type zinc finger
    0.00045   20.5  20.6    0.00058   20.2   1.4    4.9  4  zf-C2H2        Zinc finger, C2H2 type
    0.00092   19.4   1.4      0.076   13.3   0.0    3.3  3  zf-C2H2_jaz    Zinc-finger double-stranded RNA-binding
  ------ inclusion threshold ------
      0.072   13.4   5.7      0.044   14.1   1.9    2.5  3  zf-Di19        Drought induced 19 protein (Di19), zinc-bindin
       0.11   12.4   4.4        2.6    8.0   0.1    2.8  3  Rad50_zn_hook  Rad50 zinc hook motif
       0.12   12.7   4.7        5.9    7.2   0.2    3.5  3  zinc_ribbon_9  zinc-ribbon


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.6      0.09   2.3e+02       5      23 ..     358     376 ..     357     377 .. 0.73
   2 !   20.7   0.7     2e-07   0.00051       1      23 [.     384     406 ..     384     407 .. 0.96
   3 !    7.0   0.7     0.005        13       6      24 .]     494     514 ..     491     514 .. 0.86
   4 !    8.9   0.1    0.0012       3.1       2      20 ..     532     551 ..     532     554 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.09
   zf-C2H2_4   5 iCgksFsskkaLlrHlkth 23 
                 +C++  + + +L++H  th
  CCD24765.1 358 QCPTCLNYYANLSTHKSTH 376
                 6777776667789999998 PP

  == domain 2  score: 20.7 bits;  conditional E-value: 2e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 +kCpiC + F ++++L rH k+h
  CCD24765.1 384 HKCPICERGFARNNDLIRHKKRH 406
                 69********************9 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.005
   zf-C2H2_4   6 C..gksFsskkaLlrHlkthH 24 
                 C  +++Fs+++++++Hlk+ H
  CCD24765.1 494 ChqTGVFSRCDTYKNHLKALH 514
                 555689************998 PP

  == domain 4  score: 8.9 bits;  conditional E-value: 0.0012
   zf-C2H2_4   2 kCpiCgksFsskka.LlrHl 20 
                 +C++Cg  F + +  L++H+
  CCD24765.1 532 RCKHCGMGFVNVDVwLNKHV 551
                 6*********9999667797 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.3    0.0086        22      11      25 ..     363     377 ..     358     379 .. 0.80
   2 !   20.2   0.2   1.6e-07   0.00042       2      26 ..     384     408 ..     384     409 .. 0.98
   3 ?   -3.4   0.1       4.3   1.1e+04       3       8 ..     532     537 ..     532     540 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0086
   zf-C2H2_6  11 FpslqaLggHkksHr 25 
                 ++++ +L +Hk++H 
  CCD24765.1 363 LNYYANLSTHKSTHL 377
                 47999*********6 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.6e-07
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksHrk 26 
                 h+C++C + F    +L+ Hkk+H+k
  CCD24765.1 384 HKCPICERGFARNNDLIRHKKRHWK 408
                 9***********************8 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.3
   zf-C2H2_6   3 eCsvCs 8  
                 +C+ C+
  CCD24765.1 532 RCKHCG 537
                 699998 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.0     0.037        94       5      23 .]     358     376 ..     356     376 .. 0.94
   2 !   20.2   1.4   2.3e-07   0.00058       1      23 []     384     406 ..     384     406 .. 0.98
   3 ?    3.4   0.4     0.049   1.2e+02       9      23 .]     499     514 ..     494     514 .. 0.91
   4 ?    4.4   0.3     0.024        60       2      12 ..     532     542 ..     532     544 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.037
                 TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   5 dCgksFkrksnLkrHirtH 23 
                  C+ + +   nL +H +tH
  CCD24765.1 358 QCPTCLNYYANLSTHKSTH 376
                 6*****************9 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2.3e-07
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 +kCp+C + F r+ +L rH ++H
  CCD24765.1 384 HKCPICERGFARNNDLIRHKKRH 406
                 79********************9 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.049
                 EESSHHHHHHHHHC.C CS
     zf-C2H2   9 sFkrksnLkrHirt.H 23 
                 +F+r + +k+H++  H
  CCD24765.1 499 VFSRCDTYKNHLKAlH 514
                 7***********9877 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.024
                 EETTTTEEESS CS
     zf-C2H2   2 kCpdCgksFkr 12 
                 +C++Cg+ F +
  CCD24765.1 532 RCKHCGMGFVN 542
                 7******9975 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     3e-05     0.076       2      22 ..     384     404 ..     383     404 .. 0.94
   2 ?   -1.6   0.1       1.5   3.7e+03      16      22 ..     505     511 ..     504     511 .. 0.86
   3 ?    3.4   0.0     0.039        99       4      19 ..     533     548 ..     532     548 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3e-05
                  CBBTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlk 22 
                  + C++C++ F   n+l  H+k
   CCD24765.1 384 HKCPICERGFARNNDLIRHKK 404
                  89*****************87 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.5
                  HHHCCTT CS
  zf-C2H2_jaz  16 aldnHlk 22 
                  +++nHlk
   CCD24765.1 505 TYKNHLK 511
                  69***97 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.039
                  BTTTTBBBSSHHHHHC CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldn 19 
                  C++C   F +  ++ n
   CCD24765.1 533 CKHCGMGFVNVDVWLN 548
                  ********99988865 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.9   1.7e-05     0.044       4      48 ..     358     402 ..     352     407 .. 0.83
   2 ?   -1.1   0.0      0.94   2.4e+03       3       7 ..     463     467 ..     462     475 .. 0.83
   3 ?   -3.4   0.0       4.8   1.2e+04       5      15 ..     533     543 ..     532     553 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.7e-05
     zf-Di19   4 tCPyCgkeltvkeLveHvedeHrveskevvCPvCaekvtk..dlvaH 48 
                 +CP C + +  ++L +H +++ + e +++ CP+C+   ++  dl++H
  CCD24765.1 358 QCPTCLNYY--ANLSTHKSTHLTPEDRPHKCPICERGFARnnDLIRH 402
                 799999987..5799*****9999**********9765432388888 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.94
     zf-Di19   3 ftCPy 7  
                 f+CPy
  CCD24765.1 463 FKCPY 467
                 9***9 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.8
     zf-Di19   5 CPyCgkeltvk 15 
                 C +Cg ++  +
  CCD24765.1 533 CKHCGMGFVNV 543
                 77888875433 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2    0.0071        18       9      25 ..     345     362 ..     339     364 .. 0.88
   2 ?    8.0   0.1     0.001       2.6      20      31 ..     384     395 ..     380     401 .. 0.82
   3 ?   -2.8   0.0       2.3   5.8e+03      11      23 ..     452     466 ..     442     466 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0071
                    HHHHHHHTT-SE.E-TTT CS
  Rad50_zn_hook   9 nkkieelkeakg.cCPlC 25 
                    n ++++ k++k   CP C
     CCD24765.1 345 NSNANNSKSRKKkQCPTC 362
                    7899************** PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.001
                    EE-TTT--EE-H CS
  Rad50_zn_hook  20 gcCPlCgRelde 31 
                    ++CP C+R + +
     CCD24765.1 384 HKCPICERGFAR 395
                    69******9965 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.3
                    HHHHHTT-SE..E-T CS
  Rad50_zn_hook  11 kieelkeakg..cCP 23 
                     ++ l++ kg  +CP
     CCD24765.1 452 QLKSLHQIKGafKCP 466
                    566777777777998 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.62   1.6e+03      21      28 ..     350     363 ..     340     365 .. 0.59
   2 ?    7.2   0.2    0.0023       5.9      13      31 ..     376     393 ..     372     394 .. 0.83
   3 ?    4.9   0.1     0.013        32      23      32 ..     532     541 ..     518     543 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.62
  zinc_ribbon_9  21 d......vlCPhCg 28 
                    +      + CP C 
     CCD24765.1 350 NsksrkkKQCPTCL 363
                    233444337***95 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0023
  zinc_ribbon_9  13 svspdedsdvlCPhCgggF 31 
                    +++p++ + + CP C+ gF
     CCD24765.1 376 HLTPEDRPHK-CPICERGF 393
                    6678888888.*******9 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.013
  zinc_ribbon_9  23 lCPhCgggFV 32 
                     C hCg gFV
     CCD24765.1 532 RCKHCGMGFV 541
                    4********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1531  (0.0853924); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 3962.99
//
Query:       CCD24766.1  [L=986]
Description: hypothetical protein NDAI_0D04520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-07   31.3   1.2    1.5e-07   31.3   1.2    2.0  2  zf-BED    BED zinc finger


Domain annotation for each model (and alignments):
>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   1.2   8.3e-12   1.5e-07       3      44 .]     100     147 ..      98     147 .. 0.97
   2 ?   -2.4   0.0      0.28   5.1e+03      27      37 ..     594     603 ..     590     606 .. 0.68

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 8.3e-12
                 TTSSS----GGSS--EETTTTEE----......SSTHHHHHHHHHS-H CS
      zf-BED   3 vWkyftpvslkeqkavCryCgkilsrg......ggttnLkrHLrrkHp 44 
                 +W ++  ++   + ++C++C+ il+rg      ++t n++ HL+++H+
  CCD24766.1 100 LWTHYLGIDGALNIVKCKHCNTILKRGphdaakNSTVNFRMHLKTAHK 147
                 7**********************************************6 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.28
                 ---SSTHHHHH CS
      zf-BED  27 srgggttnLkr 37 
                  ++ ++++Lkr
  CCD24766.1 594 YSS-SIHCLKR 603
                 343.9****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (986 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 6761.41
//
Query:       CCD24767.1  [L=355]
Description: hypothetical protein NDAI_0D04530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-58  198.6  28.1    1.4e-58  198.4  28.1    1.1  1  ELO           GNS1/SUR4 family


Domain annotation for each model (and alignments):
>> ELO  GNS1/SUR4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.4  28.1   7.9e-63   1.4e-58       9     249 ..      86     324 ..      78     325 .. 0.95

  Alignments for each domain:
  == domain 1  score: 198.4 bits;  conditional E-value: 7.9e-63
         ELO   9 piliallYlllvllgpklmk..nrkpfklkalvilhnlflavlSavgfvgmvkallevlkkkglvdllckddssdegrlrngllaflvllfylsKfvEl 105
                 ++ ++++Y+++++ g+ +++  n kp+ ++ +++lhnlfl+  S+v+++ +v++l+ ++ ++gl +++c     +++++  +l+++++l + l+Kf+El
  CCD24767.1  86 AMGVIAVYYVIIFGGQTILRalNAKPVTINLIFQLHNLFLTSASLVLLLLLVEQLIPMIYQHGLLWSIC-----SPNAFAPKLITLYYLNY-LTKFIEL 178
                 567899**************8888*********************************************.....88899999999999888.******* PP

         ELO 106 lDTvflvlrkkqvsfLhvYHHatvmllmwaglrfatssgivfivllNsfvHaimYtYYflsalgakklvvpwkrliTslQilQfvvgllaavyllvsyt 204
                 +DTvflvl++k++ fLhvYHH +++ll++++l  +ts+++v i  lN++vH++mY+YYfls+++++   v+wk+++T++Qi+Qf++ l+++++++++ +
  CCD24767.1 179 IDTVFLVLKRKKLLFLHVYHHGATALLCYTQLVGHTSVEWVPI-SLNLGVHVVMYWYYFLSSCKIR---VWWKQWVTRFQIIQFIIDLVFVYFATYTFY 273
                 ***********************************99999999.*****************99998...7**********************9999999 PP

         ELO 205 lkk.........vgCdtsqtpkaairlnllyllslllLFlnffiksylkkkkkk 249
                 ++k         ++C+ +   + a+++++l+l+s+llLF++f++ sy ++  kk
  CCD24767.1 274 AHKyfdgilphmGTCYGD---QLAAAYGYLILTSYLLLFISFYVTSYYRRGAKK 324
                 9999***********888...99**************************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2492.21
//
Query:       CCD24768.1  [L=1431]
Description: hypothetical protein NDAI_0D04540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-78  263.0   0.3    3.3e-77  259.8   0.1    2.3  2  CNH       CNH domain
    6.2e-39  133.2   0.0    6.2e-39  133.2   0.0    4.1  3  PH_5      Pleckstrin homology domain
    1.6e-29  103.4   0.0    1.6e-29  103.4   0.0    2.7  3  RhoGEF    RhoGEF domain
    1.4e-13   50.7   0.0    3.1e-13   49.6   0.0    1.7  1  DEP       Domain found in Dishevelled, Egl-10, and Pleckstrin


Domain annotation for each model (and alignments):
>> CNH  CNH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.082   3.7e+02     135     155 ..     645     665 ..     585     678 .. 0.80
   2 !  259.8   0.1   7.4e-81   3.3e-77       2     274 ..    1105    1407 ..    1104    1408 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.082
         CNH 135 fqvpaevfsisvlkpklcvgv 155
                 f++ ae++s +++k+klc+++
  CCD24768.1 645 FTLLAECYSPTCTKHKLCYSI 665
                 455599************985 PP

  == domain 2  score: 259.8 bits;  conditional E-value: 7.4e-81
         CNH    2 apitggqrlllGteeGlyllnl..............sdeskpvkieklssvtqlaVleelnlllllsdkqLyvydlsaLeekeeesqlakkksenlt 84  
                  + ++gg++ll++t++Gly++++                 s p+++++ +++tq+aVlee++ +lll dk+Ly+++l  L+ +  +  + +kk+    
  CCD24768.1 1105 TTCDGGRKLLIATNSGLYSSDIkrqprdkkngskpsILFSTPIQLIQRNNITQVAVLEEFQSILLLVDKKLYSCPLTLLQVEGSSGTSFFKKH---- 1197
                  5799**********************999999888878889999999999*****************************99997778888898.... PP

         CNH   85 qklpetkgchffairngyskekfLvvavks...kivllewneplkkfk.....................kklrefqvpaevfsisvlkpklcvgvak 157 
                    ++ +++++ffa  +g +++k+L+v+++s   +i+ +e+++pl ++k                     kk+ e+++++e++sis+lk +lc+g++k
  CCD24768.1 1198 -SKELINHVNFFA--EGDCNGKRLIVTAHSsshSIKFFEHEHPLLSNKhgggssstsggnnnnskksikKKIIEVTFDSEPVSISFLKANLCIGCKK 1291
                  .9***********..********************************9************************************************* PP

         CNH  158 gFelvnldegaaeslldpednsldfaarkenlkplaviqisedefLlcydefavyvdlqGrrsr.dseleWegkPesvaclepyllafhknfieirs 253 
                  gF++v+++++a+eslldp+d+sl+f a +++lkp+a++++  ++fLl y+efa++v++qG+r++ +++++Weg+P+++a+++py+laf++nfieir+
  CCD24768.1 1292 GFQIVSVSQNAHESLLDPADTSLEF-ALRDSLKPMAIYRVG-NMFLLYYTEFAFFVNNQGWRKKeSHIIHWEGEPQKFAIWYPYILAFDPNFIEIRK 1386
                  **********************999.99*************.*******************9999******************************** PP

         CNH  254 vetgelvqeisgkklrfllsg 274 
                  +etgelv++i g+k+r+l+s+
  CCD24768.1 1387 IETGELVRCILGDKIRLLQSN 1407
                  ******************987 PP

>> PH_5  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.0   7.0         4   1.8e+04      72      72 ..     268     268 ..     228     332 .. 0.60
   2 ?   -1.2   0.8      0.45     2e+03      51      97 ..     557     599 ..     556     628 .. 0.57
   3 !  133.2   0.0   1.4e-42   6.2e-39       1     135 []     945    1075 ..     945    1075 .. 0.97

  Alignments for each domain:
  == domain 1  score: -6.0 bits;  conditional E-value: 4
        PH_5  72 r 72 
                 r
  CCD24768.1 268 R 268
                 1 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.45
        PH_5  51 PLeLLvvs.eaedvpkkkglkkrkssslikkkksssnlvlvpekaekk 97 
                 PL+LL+ s + ++ +  +g++ ++s+s ++++++ + l+     ++++
  CCD24768.1 557 PLMLLSSStQLSNNTADTGMVGSTSQSSLSSNQQMALLQ-----QQRQ 599
                 888888764667777777776666544444333333222.....2222 PP

  == domain 3  score: 133.2 bits;  conditional E-value: 1.4e-42
        PH_5    1 lifkgtlkkketsksesa...diqvyLfDhalLlvkiktvnkreqykvyrrPiPLeLLvvseaedvpkkkglkkrkssslikkkksssnlvlvpeka 94  
                  ++++g l++ke s+s+ +   d+q+yL+D++lL++k+k+vnk++q+kv++rPiPL+LL+v++ ed+p+         +++i ++ ++s + +++e +
  CCD24768.1  945 IKHEGILSRKELSRSDGTvvgDVQFYLLDNMLLFLKAKAVNKWHQHKVFQRPIPLPLLFVCAGEDMPPL--------RKYIGSNADTSGTIVQSEYN 1033
                  689*************99***************************************************........899**********99***** PP

        PH_5   95 ekkkgyaitflhlGkkgye.ltLyastlaarqkwlekiekqq 135 
                  ++++++aitfl++G+k+++ +tLya+++a+ q++l+k++++q
  CCD24768.1 1034 STNPRNAITFLYYGAKHRYqVTLYAAQFAGLQTLLDKVKEEQ 1075
                  ***************99888*******************998 PP

>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   0.8         4   1.8e+04     112     118 ..     258     264 ..     244     294 .. 0.51
   2 ?   -2.1   0.2       0.9     4e+03      83      96 ..     401     414 ..     331     471 .. 0.60
   3 !  103.4   0.0   3.6e-33   1.6e-29       2     182 .]     728     908 ..     727     908 .. 0.93

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 4
                 HHHHHHH CS
      RhoGEF 112 kkfkafl 118
                 ++ ++  
  CCD24768.1 258 QQQQQQQ 264
                 1111111 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.9
                 HHSTHHHHHHHHHC CS
      RhoGEF  83 fadkfkkYseYcsn 96 
                 +++ +++Y++Y ++
  CCD24768.1 401 LQSSQQQYYKYHQH 414
                 22222223333332 PP

  == domain 3  score: 103.4 bits;  conditional E-value: 3.6e-33
                 HHHHHHHHHHHHHHHHHHHHHTHCCCHHCT....CCHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHHHHHHHHC CS
      RhoGEF   2 ikElleTErsYvrdLkvlvevylkplsele....vlseeeikiiFsnieeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkkYseYcsn 96 
                 i E++++E+++v++L++  + ++k+lse +     + ++ ik +F +i++i++++ + +le+L++r+   +++   + igd++l+f++ f+ ++ Y++ 
  CCD24768.1 728 IYEVFTSEKKFVKSLEITRDTFMKTLSETNiipaDIRKNFIKHVFAHINDIYSVN-RRFLEALSDRQ---KSSPVVRGIGDIILRFIPFFEPFVAYVAS 822
                 89*************************9997777777888889************.99********9...89999************************ PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSH..HHHHHHHHHHHHHHHHHHHH CS
      RhoGEF  97 ypnalkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpeshp..dyealkkaleaikevaseiN 182
                  p+a+ l++++++ n++f++f e++ +++   +  ++s+L++ v R  rY LL++e++k+ +++++  d e l ka++a+k+++++i+
  CCD24768.1 823 RPYAKYLIETQRSVNPYFARFDEDMMNSS--LRHGIDSFLSQGVSRPGRYMLLVREIMKSSNPEKDsrDLEILTKAMDALKDFMKRID 908
                 ***********************976654..599***************************8886645889***********999885 PP

>> DEP  Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   6.9e-17   3.1e-13       2      72 .]     471     540 ..     470     540 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 6.9e-17
                 S-SCEEECTTEEESSE-HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHCTSCECSSSSHCC--SSSSS-EEE CS
         DEP   2 vklkdrrkhlktypncftGseavdWLldnldiedreeAvalgqlLldqgliehvedkhqeFrdskqafYqf 72 
                 ++l +++k++ +y+ +ftG+ avd++++ ++ +dr+ A+ lg++L +q+l+++v ++h+ +rds++ +Y f
  CCD24768.1 471 IELGEHKKDGLIYRGAFTGKHAVDVICSIIRSSDRNLALLLGRSLDAQKLFHDVVYEHR-LRDSPYEVYEF 540
                 78899******************************************************.*********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2122  (0.118356); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.17u 0.31s 00:00:01.48 Elapsed: 00:00:00.50
# Mc/sec: 8642.17
//
Query:       CCD24769.1  [L=308]
Description: hypothetical protein NDAI_0D04560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-22   78.4   0.0    9.5e-22   77.6   0.0    1.4  1  Voldacs   Regulator of volume decrease after cellular swellin


Domain annotation for each model (and alignments):
>> Voldacs  Regulator of volume decrease after cellular swelling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   5.3e-26   9.5e-22       1     130 [.      86     241 ..      86     246 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.6 bits;  conditional E-value: 5.3e-26
     Voldacs   1 gdLyvtesrllwvsekansgisipypsIalHAiqrdkk...deqeepclyvqldeeldesdnkeseegededdneededeeessveltlvPkna..... 91 
                 ++L++++s+++++     +g++ipy s ++H++++++    ++++e  l++++d +l+e + ++  eg+  + n++  d ++ss+el l Pk++     
  CCD24769.1  86 VELFILNSSIVLWFGILGHGLEIPYTSCIYHGTKSNNHerdGHKLEILLTLERDPILNEFFPRDHMEGTTFNYNNSAGDGDLSSIELLLKPKYStydrh 184
                 79******6555554478*****************9999*******************************************************77666 PP

     Voldacs  92 ...e...............etildnifealsacqelhpdpdeeddeedeeneeneee 130
                    e               ++++ n++eals ++e h++++e++d++de+n e e+e
  CCD24769.1 185 ynqEietlftfenfginrgDELVLNCHEALSLGMEVHGSEFEDTDNDDEDNTELESE 241
                 665055666666777778888********************8878888676666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2345.20
//
Query:       CCD24770.1  [L=471]
Description: hypothetical protein NDAI_0D04570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-79  265.2   0.0    7.1e-79  264.7   0.0    1.2  1  Orn_Arg_deC_N    Pyridoxal-dependent decarboxylase, pyridoxal
    2.6e-16   59.6   0.0    5.3e-16   58.7   0.0    1.6  2  Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-termina


Domain annotation for each model (and alignments):
>> Orn_Arg_deC_N  Pyridoxal-dependent decarboxylase, pyridoxal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.7   0.0   7.9e-83   7.1e-79       2     247 .]      94     326 ..      93     326 .. 0.98

  Alignments for each domain:
  == domain 1  score: 264.7 bits;  conditional E-value: 7.9e-83
                    HHHHHHHHHHHHHCTCCEEEEEGGG---HHHHHHHHHTTEEEEESSHHHHHHHHHCTTTGGGEEEEESS--HHHHHHHHHCTHTEEEESSHHHHHH CS
  Orn_Arg_deC_N   2 asierklkrwkkalprikvfYavKansdlavlellaelGlgldcaSkaElelvlaagvsperiifanpckqreelryalekgvkvvtvdnveelek 97 
                    ++i++ + +w+++lpri++fYavK+n+++ +l+ la+ G+++dcaSk E+e++l++gvsperii+anpck  +++r a+e++vk+ t+dnveel+k
     CCD24770.1  94 KEIRNLYDNWHNKLPRIQPFYAVKCNPNPLILRQLASMGVNFDCASKLEIETILKMGVSPERIIYANPCKVSSFIRFAKEQNVKKSTFDNVEELYK 189
                    789999****************************************************************************************** PP

                    HHHHHCCEEEEEEEE-SCCSSSSTCCCSSSTTSSSSEEHCHHHHHHHHHHHHTTEEEEEEE---BSSC-SCHHHHHHHHHHHHHHHHHH.HHT-.- CS
  Orn_Arg_deC_N  98 laklapeakvllRiktdvsaatcelistggessKFGaaleeavealleaakeenlqlvGvsfHvGSgvsdleafvkavekalklfdela.elGv.k 191
                    ++k++p+++++lRi+td+s+a+c+l      s+K+G++l ++v+ ll   ke+nl+lvGvsfHvGSg+sd+++++kav++a+ +fd++    ++ +
     CCD24770.1 190 IKKFHPNSDLFLRITTDDSTAQCRL------STKYGCEL-QNVDELLSKVKELNLNLVGVSFHVGSGASDFSTLYKAVRDARFVFDKAIkDHSLpA 278
                    *************************......********.**********************************************9986777779 PP

                    -SEEE--S-BS-HCSTTSSSSTHHHHHHHHHHHHHHHHHTSSS-EEEE--SHHHHG CS
  Orn_Arg_deC_N 192 lkiLdvGGGfgveyeeeeeplkleeiaekirealeeafpgdkevtiiaEpGRalva 247
                    lkiLdvGGGf  ++e       ++e   +++ a++e+fp+ ++v+iiaEpGR++va
     CCD24770.1 279 LKILDVGGGF--QFE------TFNESSAVLNMAIDEFFPENCGVDIIAEPGRYFVA 326
                    **********..888......69*******************************98 PP

>> Orn_DAP_Arg_deC  Pyridoxal-dependent decarboxylase, C-terminal sheet domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.89   7.9e+03      65      75 ..      74      84 ..      49      85 .. 0.75
   2 !   58.7   0.0   5.9e-20   5.3e-16       5      98 .]     189     443 ..      88     443 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.89
                     EEE-SSSSTT- CS
                     xxxxxxxxxxx RF
  Orn_DAP_Arg_deC 65 dvvGptCesgD 75
                     ++   tCe+gD
       CCD24770.1 74 TINDETCEPGD 84
                     67788999998 PP

  == domain 2  score: 58.7 bits;  conditional E-value: 5.9e-20
                      E............................................................................................. CS
                      x............................................................................................. RF
  Orn_DAP_Arg_deC   5 d............................................................................................. 5  
                      +                                                                                             
       CCD24770.1 189 Kikkfhpnsdlflrittddstaqcrlstkygcelqnvdellskvkelnlnlvgvsfhvgsgasdfstlykavrdarfvfdkaikdhslpalkil 282
                      0555555555555555555555555555555555555555555555555566666666666666666666666666666666666666666666 PP

                      ............................................GGEEEEEEEEEEEEETC........EEEEEES--TTTS-HHHHCTT-... CS
                      ............................................xxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxx... RF
  Orn_DAP_Arg_deC   6 ............................................eagvLvtrViavkesek........kkfvivdaGmndllrpalygsf... 44 
                                                                  +a++L+++Via++ +++        + ++++++G+        yg++   
       CCD24770.1 283 dvgggfqfetfnessavlnmaideffpencgvdiiaepgryfvaTAFTLAAHVIAKRSVSQfdsnddehRIMLYINDGV--------YGNMnci 368
                      666666666666667777777777777777777777777777779************97767899999999********........6666555 PP

                      ..................S-EESBT.......T-SCEEC.EEEEEEEE-SSSSTT-EEEEEEEEEE.--TT-EEEESS-S CS
                      ..................xxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
  Orn_DAP_Arg_deC  45 ..................heipvke.......eeaekeeeeeeevdvvGptCesgDvlakdrelpe.levGdllafedaG 98 
                                        h             + a+++    ++v+++GptC++ D+++k+++l+  l vGd+l+f + G
       CCD24770.1 369 lfdhqeptpkilyhdgnfH-----YddlqtstPLANNNGVCPYKVSMWGPTCDGLDCITKEYYLKYdLVVGDWLYFPNLG 443
                      5555577777777555541.....14455566333444556799*********************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3351.47
//
Query:       CCD24771.1  [L=809]
Description: hypothetical protein NDAI_0D04580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-08   32.9   8.1    1.2e-07   31.2   8.1    2.0  1  GATA      GATA zinc finger
  ------ inclusion threshold ------
          2    5.9   3.9        3.1    5.3   3.9    1.2  1  ACR_tran  AcrB/AcrD/AcrF family


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   8.1   1.3e-11   1.2e-07       1      35 [.     721     757 ..     721     758 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 1.3e-11
        GATA   1 CsnCgttkTplWRrg..pdgnksLCnaCGlyykkkgl 35 
                 C++C+++++p+WR    + ++ +LCn+CGl+ykk+++
  CCD24771.1 721 CVSCRSSDSPCWRPSwsKMKHDQLCNSCGLRYKKTHT 757
                 ***************99899999***********997 PP

>> ACR_tran  AcrB/AcrD/AcrF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   3.9   0.00035       3.1     562     674 ..     429     536 ..     406     545 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.00035
                 EEEEE-STTB-HHHHHHHHHHHH.HHHHTTTTEEEEEEEECECSSE..ECCCEEEEEEEES-GCGS-SGGGSHHHHHHHHHHHCTTSTSSEEEEEETTS CS
    ACR_tran 562 vtsvqlppgvsleqtqkvlkqve.kilkekpevesvfavtGfaesgdtagpnsakvfisLkpekerkeeeksvealierlrkelkkipganvellapiq 659
                 +t+ +   g   ++     k++e k l e+ ++ s++++tG     ++++ n+ ++   +kp k r   ++s+e + + +++ ++ki + n +  ++ +
  CCD24771.1 429 ITTTNNNTGHKKTN---SFKALEiKRLLENRDILSITSKTGHTTTRKNKNNNNMNMNKIFKPTKIR---QNSSEIFNSVVKDLVEKIDQRNSKHHHVNN 521
                 44444444433333...33333315888999***********99888888888888888*******...555555556666667777777777788888 PP

                 SCCCSSSSCEEEEEE CS
    ACR_tran 660 lreletlsgvrselq 674
                 ++ + +++  + +++
  CCD24771.1 522 IKKSAKITNNNNDIA 536
                 888777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2439  (0.136037); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 5424.22
//
Query:       CCD24772.1  [L=174]
Description: hypothetical protein NDAI_0D04590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-69  232.9   0.2    2.2e-69  232.6   0.2    1.0  1  Mtr2      Nuclear pore RNA shuttling protein Mtr2


Domain annotation for each model (and alignments):
>> Mtr2  Nuclear pore RNA shuttling protein Mtr2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.6   0.2   1.2e-73   2.2e-69       3     164 .]      10     173 ..       8     173 .. 0.95

  Alignments for each domain:
  == domain 1  score: 232.6 bits;  conditional E-value: 1.2e-73
                 HHHHHHHHHHHHHHHHH---HCCHHHHHCCB-SSS-EEEETTEEESSHHHHHHHHHHHS--EEEEEEEEEEEEETTTSEEEEEEEEEEEEBTTSB-TT- CS
        Mtr2   3 qaqatetfvkkvlahLDeqdvnkleqflqlFlkpqckivfngkPlaqaaaFlkiwlqsvvltqHaltalDfHvipgtgtliinanckvrfdesGrdklG 101
                 q ++ +tf+kk+l hLD++++++l+qfl  F++++cki+fng P+aq+++Fl++w+++ v+tqHalt+lD+ +ipg+gt+i+n+n+kvrfdesGrd+lG
  CCD24772.1  10 QPEILQTFIKKILLHLDDNETKNLQQFLSYFNNTNCKIIFNGAPFAQPMIFLQMWQEQFVQTQHALTSLDYQIIPGSGTMILNINSKVRFDESGRDRLG 108
                 677899********************************************************************************************* PP

                 -BSB--------..-------BEEEEEEEEEEEEEGGGGGT--TT-EEEEEEEEEE--TTXSXBX CS
        Mtr2 102 qdstlpaeaaka..ldkarplwgsyfgvslqLvlddrilrndlngvisslnYrivykPeDsliki 164
                 qd+ +    ++    +++rp++gsyfgvslqLv+ddri+rnd+ngvis +nY++ ykPeDsliki
  CCD24772.1 109 QDALIKDGSNRGglNNNTRPIFGSYFGVSLQLVIDDRIFRNDFNGVISCFNYNMLYKPEDSLIKI 173
                 ***98777555333799**********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1241.58
//
Query:       CCD24773.1  [L=766]
Description: hypothetical protein NDAI_0D04600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-14   52.6  19.2      2e-13   50.4  19.2    2.0  1  SUR7      SUR7/PalI family
  ------ inclusion threshold ------
          9    6.2  22.2         15    5.5   1.2    2.5  2  Fig1      Ca2+ regulator and membrane fusion protein Fig1


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4  19.2   2.3e-17     2e-13       4     209 ..      16     641 ..      13     644 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 2.3e-17
        SUR7   4 illflslaalilllfailgsiknstpltsiylskfdlsgldlaqi...................................................... 48 
                 i++++++  +i +++a +gs+ n  plt+iy+ ++d s ++ ++i                                                      
  CCD24773.1  16 IIILFLFTIFIVIIVATAGSTANYKPLTNIYIGDADISHINVTKIipavgpilvimgtaltapnssldeifgslkeiadtpaltplltllsnaedvens 114
                 6677777778888999***************************99****************************************************** PP

        SUR7  49 ................................................................................................... 48 
                                                                                                                    
  CCD24773.1 115 iialsdlaplalsgnpvsdtkelteisgllsvsnndtgtltglselvlpamahlnssssssasddsttivmtllndsidplnstislkylngltpddkv 213
                 *************************************************************************************************** PP

        SUR7  49 ................................................................................................... 48 
                                                                                                                    
  CCD24773.1 214 mmlpvfrifgssdnitmtlqslegimnadppippqlastllttiqsglersdnltavlssigslvpdaqrssfnsvgqllnassspnntlsilsdliee 312
                 *************************************************************************************************** PP

        SUR7  49 ................................................................................................... 48 
                                                                                                                    
  CCD24773.1 313 nitesqvaknsfgeltslmmnsnnksmvvqsvqslamvpntteadmqldalttmlrstdnqnatvdtlatlssglspnsstfeyipslfqllgaskepg 411
                 *************************************************************************************************** PP

        SUR7  49 ....................................................gladvysfgvwgyC.dnsdvnytkCskpkagypfdp..l..eelnse 90 
                                                                     +++   + ++++ C  n +++  +Cs+p+a  ++d   +  + l ++
  CCD24773.1 412 esfsslvtltawaqqnpetftpivailnsaesveqiseealtvmtptlleflKIPIHFRLSIFSLCkANLKNEIIECSSPHAVQNMDFrhIvyDALMDS 510
                 ******************************************************************99999**************99433233222222 PP

        SUR7  91 sngkvd................lPsnlrktlsklnnltkalfilhiialvlsfislvvgllaicvspdnsrllsflnlllsvlsflatllaall.dtll 172
                      d                l ++l++  + +   +ka++++ + a++ sf ++++ +l i+     + ++   ++++s++ +l++ l  +l +t++
  CCD24773.1 511 -----DfepylralnitadslqLDGRLQDREHEYVPSIKAVLAMNLLAIITSFFTMIFLFLLIF---LRRFIVHKTMWFCSLVLVLFVGLFTGLgATIC 601
                 .....12345567788999***************************************999998...33334666777777777777777777777777 PP

        SUR7 173 fvfvrkkin....lkefgikaslglkflafaWlalaaallv 209
                  v v   i+      ++g+ +s g ++++ +W+a+a+a+++
  CCD24773.1 602 QV-VVSIIKsgthHDRYGVVFSAGSAYFGCVWTAFALAVVS 641
                 77.4556666777999*********************9986 PP

>> Fig1  Ca2+ regulator and membrane fusion protein Fig1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.2    0.0016        15      81     135 ..      13      67 ..       6      82 .. 0.80
   2 ?    5.1  13.9    0.0022        20      79     185 ..     549     648 ..     536     651 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0016
        Fig1  81 llmvaiiLtlllfllllyfplgseipllPfkskavskvalvlsflllllwlvgal 135
                 ll ++i + +  f+++++ ++gs+++ +P+++  +  + ++ + ++ ++ +vg +
  CCD24773.1  13 LLSIIILFLFTIFIVIIVATAGSTANYKPLTNIYIGDADISHINVTKIIPAVGPI 67 
                 566677777788999999999***********99998888888877777766655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0022
        Fig1  79 pyllmvaiiLtlllfllllyfplgseipllPfkskavskvalvlsflllllwlvgalwqhvassaastlveeasmgivkskvGkkaealgWfafaflll 177
                  +ll +++ ++++ fl+ll f     + ++  k+  +    lvl+ ++ l++++ga    v++s +++ + +  +g+v  + G+   +  W+afa++++
  CCD24773.1 549 MNLLAIITSFFTMIFLFLLIFL----RRFIVHKT--MWFCSLVLVLFVGLFTGLGATICQVVVSIIKSGTHHDRYGVVF-SAGSAYFGCVWTAFALAVV 640
                 4677777777777777777776....44554444..58999999********************************985.68**************999 PP

        Fig1 178 vclglwvl 185
                 + ++++++
  CCD24773.1 641 SNFIMLYI 648
                 87777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1179  (0.0657594); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 5460.62
//
Query:       CCD24774.1  [L=892]
Description: hypothetical protein NDAI_0D04610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-65  221.8   9.6    1.1e-64  218.4   9.6    2.0  1  ABC_membrane_2  ABC transporter transmembrane region 2
    3.8e-19   69.5   0.2    7.1e-17   62.2   0.2    2.6  1  ABC_tran        ABC transporter
    2.8e-05   24.1   0.1    2.8e-05   24.1   0.1    3.6  4  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
  ------ inclusion threshold ------
      0.012   15.5   0.3      0.047   13.6   0.0    2.1  2  Rad17           Rad17 P-loop domain
      0.019   14.7   0.0      0.045   13.5   0.0    1.6  1  AAA_29          P-loop containing region of AAA domain
      0.069   13.4   0.0       0.71   10.1   0.0    2.5  2  AAA_22          AAA domain


Domain annotation for each model (and alignments):
>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.4   9.6   3.7e-68   1.1e-64       1     269 []     135     431 ..     135     431 .. 0.96

  Alignments for each domain:
  == domain 1  score: 218.4 bits;  conditional E-value: 3.7e-68
  ABC_membrane_2   1 LlkilipklkskeallllvlllllvlrtllsvlvaqldgklvkalvaknvraFvlsll.kfallavpasfvnsalkYltqkLalafRkrLtkhll 94 
                     Llki++  +++k+++l++++++ll++rt+ls+ va+ldgklv++lv+ ++ +F++ ll ++++l +pasf+n++++Ylt+ +++++++ ++k ll
      CCD24774.1 135 LLKIIL--NDKKCLILFFTQAILLIIRTFLSLHVATLDGKLVSSLVKAQYPKFLKILLgQWMVLGIPASFINALINYLTKLCSVTINRLISKVLL 227
                     567777..8899*****************************************998877************************************ PP

  ABC_membrane_2  95 seYlknr.tyYkvsnlde.........................ridnpDqritqDvekFtsslssLlsglvkpildvilftfiL....wslsgtl 159
                     ++Yl+ + t+Y v++  +                          ++++++++t+D+++F+ ++s Ll++l+kp+ld+il++f+L    ++++g++
      CCD24774.1 228 DKYLSSHhTFYAVAASTGvgtgttpnkkdgsdddnnnttqrinSVSEIQDNLTKDIYTFSTNTSILLNQLLKPMLDLILCSFKLlmssTNNMGEG 322
                     *****999*******999999*******************99999***************************************76666666666 PP

  ABC_membrane_2 160 gllllllyvllatvilriigpplgklvaeeeklegefRylhsrlitnaEeIAFyrGeevEkkqlqrrfkslidnlrrilsrrlrlgiieafvlkY 254
                     +l +l l+v+ +++il++i+p++++l++++++le++fR+lhs+++t++EeIA+++G+ +E ++l+  f++l+  l+r +++++ ++ +++f++kY
      CCD24774.1 323 TL-ALGLIVYGSNSILKLIQPNFTSLTMKRASLESAFRSLHSNIHTHSEEIALLKGQDRELANLDFTFYKLVLFLNREIKAKALYDLATTFIIKY 416
                     66.9******************************************************************************************* PP

  ABC_membrane_2 255 lasilgyvlvalpif 269
                     +++++g+vl+++pif
      CCD24774.1 417 TWGAAGLVLCSIPIF 431
                     **************8 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.2   2.4e-20   7.1e-17       1     137 []     544     785 ..     544     785 .. 0.72

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 2.4e-20
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.......SEEEEEETTCEGGG.B-HHHCCHCEEEE-SS--S-TTSBHHHH............ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx............ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp.......teGeilldgkdlke.qeleslrkeigvlpqepqlfpeltvren............ 79 
                 +kn+s++lk+g  + i+G+nG+GKS+L+++l gl           + ++ l +++l++ ++ ++ + +i +lpq+p + +++t re+            
  CCD24774.1 544 VKNLSFELKHGDHLLIIGPNGCGKSSLFRILGGLWPVrqiddpnLKTKLILPKRSLNDeTNGNKQECSIFYLPQKPYMGNRSTFREQiiypdtmeqflq 642
                 58*****************************9997654443333333335557777777888999999******************************* PP

                 .............................................................HHHTCHHHHHHHSTTGG..................... CS
                 .............................................................xxxxxxxxxxxxxxxxx..................... RF
    ABC_tran  80 .............................................................esdeeiekalsklglke..................... 96 
                                                                              e               +                     
  CCD24774.1 643 rfnndyekgdkeltkilealelddliaenlslilaqrsmndqtskkisiqeqsqaqaknqgE---------------Kiegddvddrdlimvpsngvet 726
                 *****996666666666666666666666666666666666666666655544444444440...............0444455555555555555666 PP

                 .....................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 .....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  97 .....................lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                      +  +++     +LS G +qr+a+ar+   +pk+ +lDE+t+
  CCD24774.1 727 ssaddaetsssssiinvrdafDLRRNW---SDELSIGVQQRLAMARMYYHRPKFAVLDECTS 785
                 666655555555555543322333333...49****************************96 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.3     0.057   1.7e+02      96     181 ..      44     129 ..      27     164 .. 0.81
   2 ?   -0.9   0.0      0.38   1.1e+03     111     219 ..     251     363 ..     248     389 .. 0.72
   3 ?   -2.5   0.1       1.2   3.6e+03     143     195 ..     473     524 ..     432     542 .. 0.57
   4 !   24.1   0.1   9.4e-09   2.8e-05       3      96 ..     558     650 ..     557     714 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.057
      AAA_21  96 sgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfake 181
                 +   ++++++++ d++ p ++++++  s++ +  +  ++ ++ + +++  +i+s++++ l+ ++++ + +     +++   + +k+
  CCD24774.1  44 RKDNKKSQVTDKNDKTLPSYQRNKIKNSGRIEGYSGNEDNDEGEESDVQALIISPKNDRLSKSRSGSNVEQEDKKNPNVSEPTPKR 129
                 556678899999*************************************************9999998755544444444444444 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.38
      AAA_21 111 fnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrke....rigllnifadyfgfakekrllqrlvrslklveielsdlgeg 205
                 ++++++g++++  +  ++  svse +d+  ++ +t++t++   l++ll  +++      ++l +  ++   +   ++l+   ++s+++   +  +++ +
  CCD24774.1 251 TPNKKDGSDDDNNNTTQRINSVSEIQDNLTKDIYTFSTNTSILLNQLLKPMLDLilcsFKLLMSSTNNMGEGTLALGLIVYGSNSILKLIQPNFTSLTM 349
                 567888899999999999999999999999999999999999999988777776777766666666666666666666666666666666666666666 PP

      AAA_21 206 eeliasvderlrer 219
                 ++ + ++++r++++
  CCD24774.1 350 KRASLESAFRSLHS 363
                 66666666666555 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.2
      AAA_21 143 altditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslklv 195
                 ++ +++ r+++l+++ + lr   +++ln f+d++  + +++l ++ ++ +  +
  CCD24774.1 473 TASSSIGRFVELKKNVQQLRG-VSLRLNEFNDLLDRNLNPQLEEKDTSMIEYN 524
                 344455555555555555555.6666666666666666666666555555555 PP

  == domain 4  score: 24.1 bits;  conditional E-value: 9.4e-09
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv.eeklssvetlles 96 
                 ++iGpNg+GKS+L+++l +l+     ++++ + +++   ++   +  +++++ + + f +++++  g+r +++ ++ + +  e  l++++++ e+
  CCD24774.1 558 LIIGPNGCGKSSLFRILGGLWP--VRQIDDPNLKTKLILPKRSLNDETNGNKQECSIFYLPQKPYMGNRSTFREQIIYPDTmEQFLQRFNNDYEK 650
                 69******************95..55666666666666666666666666666666666666777777777777777777765555555555444 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.6e-05     0.047      42     102 ..     551     613 ..     539     662 .. 0.63
   2 ?   -3.6   0.1       2.9   8.7e+03      19      39 ..     857     877 ..     855     884 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
       Rad17  42 srkkriLLisGPsGCgkstvvkvLskelgiklrewln.pvslkepdn.qksdfkgltekesrf 102
                  ++   LLi GP GCgks   ++L     ++ ++  n  ++l  p+   ++++ g  +  s f
  CCD24774.1 551 LKHGDHLLIIGPNGCGKSSLFRILGGLWPVRQIDDPNlKTKLILPKRsLNDETNGNKQECSIF 613
                 4444579*****************887766655554423344444443455666666666655 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.9
       Rad17  19 eelavhkkkieevkewlkadv 39 
                 +++ v kkk+ ++k + +++ 
  CCD24774.1 857 QQVPVWKKKLTDLKIARRSNL 877
                 689999****99997766555 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.5e-05     0.045      16      39 ..     548     571 ..     539     573 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
      AAA_29  16 tieidlkgatlltGpsGsGKSTll 39 
                 ++e++  +  l++Gp+G GKS+l+
  CCD24774.1 548 SFELKHGDHLLIIGPNGCGKSSLF 571
                 567775559************996 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00024      0.71       4      25 ..     553     574 ..     550     668 .. 0.85
   2 ?   -0.2   0.0      0.38   1.1e+03      75     128 ..     754     809 ..     696     817 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00024
      AAA_22   4 tagilvvtGesGtGKTtllrrl 25 
                 +  +l+++G+ G+GK+ l r l
  CCD24774.1 553 HGDHLLIIGPNGCGKSSLFRIL 574
                 7789*************99866 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.38
      AAA_22  75 seellealeqalrarav....ielliiDEaqh.lrseealeeLrsllnlsrkgvqliLv 128
                 s+el   ++q l  +++    +++ ++DE    + s+e+ ++  +++   ++g++li v
  CCD24774.1 754 SDELSIGVQQRLAMARMyyhrPKFAVLDECTSaV-SPEMEQKMYKISQ--DFGISLISV 809
                 55555566777777777778899*******9977.9999999999999..888888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (892 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 6263.87
//
Query:       CCD24775.1  [L=517]
Description: hypothetical protein NDAI_0D04620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.6e-110  369.6  15.7   2.6e-110  368.8  15.7    1.4  1  Mo25          Mo25-like


Domain annotation for each model (and alignments):
>> Mo25  Mo25-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.8  15.7  1.5e-114  2.6e-110       1     327 []      14     392 ..      14     392 .. 0.99

  Alignments for each domain:
  == domain 1  score: 368.8 bits;  conditional E-value: 1.5e-114
        Mo25   1 flfkk.qktpaelvkslkellskld........................................nskkkkkaeeelskqLkslkeillgdpdtepske 58 
                 f++kk +kt++++vk ++++l+k+                                         +s+++kk++ee+sk+L  lk+++l d+d +ps+e
  CCD24775.1  14 FWWKKnPKTSSDYVKLISNQLAKIAassssstvlstsssqpnstnaiaasnssmnpssspnstsaTSDSNKKLQEECSKYLIGLKHFILADTDPHPSPE 112
                 89**************************************************************99999****************************** PP

        Mo25  59 qvaqLlqeilkedllyklvknlkklefearkdvaqifsnllrrktksklpaveyletkpeilqlllegyes.........keialhagsilrecikyea 148
                 ++++L+++++++dl+y+l+ ++++lefeark+v+ if+++l++++++k+++v+y+ ++p++++l+l+ +es         ++++l +g+++ ecikye+
  CCD24775.1 113 AIDELYTAMFRSDLFYDLILHIPDLEFEARKEVMIIFAICLNYSKDNKFVTVDYFIQQPKTINLMLKICESslqqkrsasHDVFLVIGNMIIECIKYEQ 211
                 **********************************************************************77*******99****************** PP

        Mo25 149 lariiLyseefwkffeyvensnfeiasdafetlkelLtkhkklva.efl..eenfdeffkyinkllqsenYVtkrqslkLLgelLldrsnlkvmtrYvs 244
                 l+riiL+++++w+ffe+++  nfei+++++++l+ ++t+h+klv+ ef+  ++n+ +f+k+inkl+++ nYVtkrqs+kLL++l+++r+++++m++Y++
  CCD24775.1 212 LCRIILKDPQLWNFFEFAKLANFEISTQSLQILNAVFTTHSKLVSkEFFnnSNNIINFIKRINKLMTHGNYVTKRQSTKLLASLIIQRNFNQLMNTYIN 310
                 ********************************************999**77789999****************************************** PP

        Mo25 245 spenLklimnlLkdkskniqfeaFhvFKvfVanpnKskpvqkiLikNrdkLlkfledfqtdreeDeqfkdEkeflikqieeLp 327
                  pe Lk+imnl++dkskn+q+eaF++FK+++anp+Kskp+ +iLikNr+kLlk++e+f  d+ +D  f +E+ef+i++ie+Lp
  CCD24775.1 311 APESLKIIMNLMTDKSKNLQLEAFNCFKILIANPRKSKPILDILIKNREKLLKYFETFGLDN-QDPVFLNEREFVIDRIENLP 392
                 **************************************************************.******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1707  (0.0952089); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3568.66
//
Query:       CCD24776.1  [L=492]
Description: hypothetical protein NDAI_0D04630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-27   94.1   2.6    8.1e-27   93.1   2.6    1.5  1  Bromodomain      Bromodomain
    2.2e-09   37.6   0.0    4.2e-09   36.6   0.0    1.5  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    2.5e-06   27.5   0.0      5e-06   26.5   0.0    1.5  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    0.00037   20.8   0.1    0.00073   19.9   0.1    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   2.6   1.8e-30   8.1e-27       2      83 ..     390     471 ..     389     472 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.1 bits;  conditional E-value: 1.8e-30
                  HHHHHHBHTTTCGGGGCSTT-GCCSTTHHHH.SS---HHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain   2 ekilsellehklaepFlepvdpeefpdyyavikkPldLstIkkklesnkYksladfeadlkllfsNarkyngegsviyelae 83 
                  ++il+el +h +a pFl+pv++ee+pdyy++ik+P+dLst++ kle+nkY++++df  d++l+f+N+r+ynge++ ++++a+
   CCD24776.1 390 QNILTELQNHAAAWPFLQPVNKEEVPDYYEFIKEPMDLSTMEIKLENNKYQKMEDFIYDARLVFNNCRMYNGENTSYFKYAN 471
                  79*****************************************************************************997 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   9.5e-13   4.2e-09      38     117 .]     204     279 ..     173     279 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 9.5e-13
                     EEETTEEEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  38 aeedgeliGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYeklGF 117
                     +++  +++G i++++ +   ++ a+i ++a+s++ + +G+G +L+++l +++r+  +ik+ +l + +dn  ai++++k GF
      CCD24776.1 204 VRKPLTVVGGITYRPFDK--REFAEIVFCAISSTEQVRGYGAHLMNHLKDYVRNTsNIKY-FL-TYADN-YAIGYFKKQGF 279
                     45555799***9999988..9**********************************77777.77.77777.******88**9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.1e-09     5e-06      20     108 ..     187     281 ..     158     292 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.1e-09
  Acetyltransf_10  20 ealreri.eegealllvaeeggkivGvielrdgs.....hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnaspyavpfYeklGF 106
                      e +++ + + ++  + v+ +  ++vG i++r  +     +i  +++++  + +G+g+ L++++++++++   ++  +   a++ya+++++k+GF
       CCD24776.1 187 EYIARLVyDRSHLSMAVVRKPLTVVGGITYRPFDkrefaEIVFCAISSTEQVRGYGAHLMNHLKDYVRNTS-NIkYFLTYADNYAIGYFKKQGF 279
                      5555555556667777777778899999875555577899**************************97664.44499999999*********** PP

  Acetyltransf_10 107 ka 108
                      ++
       CCD24776.1 280 TK 281
                      86 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   1.6e-07   0.00073      13      75 ..     209     280 ..     193     281 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.6e-07
                     EEEEEEEEEEES....TCTEEEEE-GGGTTSSHHHHHHHH.....TT.SEEEEE.EEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  13 kivGfialslld....aeitrlaVdpeyrgkGiGraLlea.....ae.kgiile.qlelnaekaikfYeklGFe 75 
                      +vG i + + d    aei + a++   + +G+G  L+++     ++ ++i+ +  ++ ++ +ai++++k GF+
      CCD24776.1 209 TVVGGITYRPFDkrefAEIVFCAISSTEQVRGYGAHLMNHlkdyvRNtSNIK-YfLTYADN-YAIGYFKKQGFT 280
                     45788888888888777777799****************8544431134433.22334444.9**********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3636.91
//
Query:       CCD24777.1  [L=175]
Description: hypothetical protein NDAI_0D04640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-24   83.9  14.0    1.3e-05   24.4   0.2    4.3  4  EF-hand_1     EF hand
    2.6e-21   75.9   6.3    2.3e-12   47.2   1.3    2.5  2  EF-hand_7     EF-hand domain pair
    9.3e-20   68.8   7.5    0.00024   20.8   0.0    4.4  4  EF-hand_6     EF-hand domain
    1.5e-16   59.0  14.3    0.00071   19.0   0.2    4.5  4  EF-hand_5     EF hand
    9.3e-10   38.2  13.3     0.0059   16.4   1.3    4.4  4  EF-hand_8     EF-hand domain pair
    9.9e-07   28.7   9.5     0.0045   16.9   0.2    4.0  4  EF-hand_4     Cytoskeletal-regulatory complex EF hand
    5.8e-06   26.6   0.2        0.1   12.9   0.1    2.4  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
     0.0044   17.3   0.1        4.2    7.8   0.0    2.9  3  EF-hand_9     EF-hand domain


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.1e-07   0.00024       2      25 ..      26      49 ..      25      50 .. 0.92
   2 !   23.1   0.4   1.5e-08   3.3e-05       4      26 ..      60      82 ..      58      85 .. 0.91
   3 !   23.3   1.0   1.2e-08   2.8e-05       2      27 ..      95     120 ..      94     122 .. 0.90
   4 !   24.4   0.2   5.8e-09   1.3e-05       2      27 ..     136     161 ..     135     163 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.1e-07
                HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkel 25
                l++ F+++D+D +G Id++Ef+++
  CCD24777.1 26 LRKRFMKLDRDSSGSIDKNEFMSI 49
                7899*****************975 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1.5e-08
                HHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  4 eiFrefDkDgdGkIdfeEfkell 26
                +i+++fD D++G +df+Ef++ l
  CCD24777.1 60 RIMEVFDADNSGDVDFQEFITGL 82
                69*****************9987 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 1.2e-08
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 lk +F+++D D+dG+I+  E+  +lk
  CCD24777.1  95 LKFAFKIYDIDKDGFISNGELFIVLK 120
                 899*****************988877 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 5.8e-09
                 HHHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellk 27 
                 +++ ++e D DgdG+++feEfk++++
  CCD24777.1 136 VDRTIMENDLDGDGHLSFEEFKSAIE 161
                 68889999**************9986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.3   1.1e-10   2.4e-07       2      68 ..      24      80 ..      23      83 .. 0.83
   2 !   47.2   1.3     1e-15   2.3e-12       2      70 ..      93     160 ..      92     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.1e-10
   EF-hand_7  2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlk 68
                e+l+ +F +lD+d +g++dk+e++  +         g++ s     ++++ fD d++G ++f+EF +
  CCD24777.1 24 ERLRKRFMKLDRDSSGSIDKNEFM-SIP--------GVS-SNPLAGRIMEVFDADNSGDVDFQEFIT 80
                789*******************88.444........444.333456*******************86 PP

  == domain 2  score: 47.2 bits;  conditional E-value: 1e-15
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkef....DtdkdGvisfdEFlkly 70 
                 eklk aFk +D d+dg+++  el  +l++       gs+l de+l+++++      D+d+dG +sf+EF+ ++
  CCD24777.1  93 EKLKFAFKIYDIDKDGFISNGELFIVLKI-----MVGSNLNDEQLQQIVDRTimenDLDGDGHLSFEEFKSAI 160
                 89********************9989998.....**********999999977899*************9875 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.1e-07   0.00024       1      25 [.      25      49 ..      25      51 .. 0.93
   2 !   13.0   0.1   3.3e-05     0.074       8      27 ..      64      83 ..      60      86 .. 0.89
   3 !   20.8   0.4   1.1e-07   0.00024       2      27 ..      95     120 ..      94     124 .. 0.91
   4 !   15.6   0.0     5e-06     0.011      10      28 ..     144     162 ..     141     170 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.1e-07
   EF-hand_6  1 elreaFklfDkdgdGkidaeElrka 25
                +lr+ F+++D+d +G+id++E++++
  CCD24777.1 25 RLRKRFMKLDRDSSGSIDKNEFMSI 49
                6899******************976 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.3e-05
   EF-hand_6  8 lfDkdgdGkidaeElrkalr 27
                 fD d++G +d++E++  l+
  CCD24777.1 64 VFDADNSGDVDFQEFITGLS 83
                7**************98886 PP

  == domain 3  score: 20.8 bits;  conditional E-value: 1.1e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+ aFk++D d+dG+i+  El  +l+
  CCD24777.1  95 LKFAFKIYDIDKDGFISNGELFIVLK 120
                 789******************99987 PP

  == domain 4  score: 15.6 bits;  conditional E-value: 5e-06
   EF-hand_6  10 DkdgdGkidaeElrkalrk 28 
                 D dgdG++++eE+++a+ +
  CCD24777.1 144 DLDGDGHLSFEEFKSAIET 162
                 99*************9975 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.2   6.4e-07    0.0014       1      22 [.      26      47 ..      26      49 .. 0.90
   2 !   15.3   0.3   4.5e-06      0.01       6      23 ..      63      80 ..      60      83 .. 0.88
   3 !   14.4   0.4   8.7e-06     0.019       4      21 ..      98     115 ..      95     121 .. 0.90
   4 !   19.0   0.2   3.2e-07   0.00071       9      23 ..     144     158 ..     135     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 6.4e-07
                HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5  1 lkdtFqaiDlNgDGkIskeELk 22
                l++ F ++D + +G I+k E++
  CCD24777.1 26 LRKRFMKLDRDSSGSIDKNEFM 47
                5777*****************7 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 4.5e-06
                HHH-SS-SSCE-HHHHHH CS
   EF-hand_5  6 qaiDlNgDGkIskeELkt 23
                + +D++++G ++++E+ t
  CCD24777.1 63 EVFDADNSGDVDFQEFIT 80
                78**************77 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 8.7e-06
                 HHHHH-SS-SSCE-HHHH CS
   EF-hand_5   4 tFqaiDlNgDGkIskeEL 21 
                 +F+  D ++DG+Is  EL
  CCD24777.1  98 AFKIYDIDKDGFISNGEL 115
                 5*************8887 PP

  == domain 4  score: 19.0 bits;  conditional E-value: 3.2e-07
                 -SS-SSCE-HHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELkt 23 
                 Dl+gDG++s+eE+k 
  CCD24777.1 144 DLDGDGHLSFEEFKS 158
                 9************85 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   3.7e-05     0.082      32      49 ..      30      47 ..      26      49 .. 0.94
   2 !   11.5   0.4   9.3e-05      0.21      32      50 ..      62      80 ..      61      84 .. 0.88
   3 ?    4.8   0.2     0.011        25      25      45 ..      92     112 ..      86     121 .. 0.81
   4 !   16.4   1.3   2.6e-06    0.0059      23      51 ..     127     159 ..     106     163 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.7e-05
   EF-hand_8 32 frefDtdgdGkisfeEFc 49
                f+++D+d +G i+++EF+
  CCD24777.1 30 FMKLDRDSSGSIDKNEFM 47
                889**************9 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 9.3e-05
   EF-hand_8 32 frefDtdgdGkisfeEFcv 50
                +  fD d++G ++f EF+ 
  CCD24777.1 62 MEVFDADNSGDVDFQEFIT 80
                668**************86 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.011
   EF-hand_8  25 eeevdilfrefDtdgdGkisf 45 
                 +e++   f+  D+d+dG is 
  CCD24777.1  92 NEKLKFAFKIYDIDKDGFISN 112
                 56688899*********9985 PP

  == domain 4  score: 16.4 bits;  conditional E-value: 2.6e-06
   EF-hand_8  23 lseeevdilfr....efDtdgdGkisfeEFcvl 51 
                 l++e+++ +++    e D+dgdG++sfeEF   
  CCD24777.1 127 LNDEQLQQIVDrtimENDLDGDGHLSFEEFKSA 159
                 66666666654222267*************875 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.15   3.3e+02      43      66 ..      24      47 ..       6      56 .. 0.70
   2 !    9.0   0.1   0.00057       1.3      47      69 ..      60      82 ..      51      87 .. 0.84
   3 !    8.0   0.1    0.0012       2.8      41      72 ..      91     122 ..      82     124 .. 0.86
   4 !   16.9   0.2     2e-06    0.0045      33      68 ..     120     159 ..     118     165 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.15
   EF-hand_4 43 dklekiwdladidedgkldfeefc 66
                ++l k +   d d+ g++d +ef+
  CCD24777.1 24 ERLRKRFMKLDRDSSGSIDKNEFM 47
                345555666788999999999996 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00057
   EF-hand_4 47 kiwdladidedgkldfeefciam 69
                +i ++ d d+ g++df+ef+  +
  CCD24777.1 60 RIMEVFDADNSGDVDFQEFITGL 82
                799999*************8765 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0012
   EF-hand_4  41 eedklekiwdladidedgkldfeefciamrli 72 
                 +++kl+  +++ did+dg +   e+ i+++++
  CCD24777.1  91 KNEKLKFAFKIYDIDKDGFISNGELFIVLKIM 122
                 68899999*******************99986 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 2e-06
   EF-hand_4  33 pvlknskleedklekiwdla....didedgkldfeefcia 68 
                  ++  s+l++++l++i d +    d+d dg+l feef  a
  CCD24777.1 120 KIMVGSNLNDEQLQQIVDRTimenDLDGDGHLSFEEFKSA 159
                 68889***********986333349************765 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00012      0.27      55     111 ..      25      79 ..       9      81 .. 0.90
   2 !   12.9   0.1   4.6e-05       0.1      53     111 ..      92     157 ..      87     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
  SPARC_Ca_bdg  55 pvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkislkEwc 111
                    ++ +F klD +s ++++k+E  ++    v+ +    + +e  Dad+ ++++ +E++
    CCD24777.1  25 RLRKRFMKLDRDSSGSIDKNEFMSIPG--VSSNPLAGRIMEVFDADNSGDVDFQEFI 79 
                   56678********************99..99************************97 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.6e-05
  SPARC_Ca_bdg  53 kepvawkFsklDtnsdkvlsksELaplraplv.......klehCikpflescDadkdkkislkEwc 111
                   +e++++ F+  D ++d+++s+ EL  + + +v       +l++ +++ +++ D+d d+++s +E+ 
    CCD24777.1  92 NEKLKFAFKIYDIDKDGFISNGELFIVLKIMVgsnlndeQLQQIVDRTIMENDLDGDGHLSFEEFK 157
                   57899*******************9887766533322335677889999999**********9996 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.87     2e+03      31      59 ..      19      47 ..       5      49 .. 0.56
   2 !    6.5   0.0    0.0048        11       3      37 ..      61      95 ..      59      97 .. 0.87
   3 !    7.8   0.0    0.0019       4.2       3      59 ..      98     157 ..      96     163 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.87
   EF-hand_9 31 dpees.eLeelakelDPdgedasvdldtfl 59
                d  e  +L +   +lD d   +s+d++ f 
  CCD24777.1 19 DLDEIeRLRKRFMKLDRDSS-GSIDKNEFM 47
                44444455555556666666.777777775 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0048
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseL 37
                + ev+D +  G V  ++ i+ L +  ++ +++ +L
  CCD24777.1 61 IMEVFDADNSGDVDFQEFITGLSIFSGRGSKNEKL 95
                569*****************999999988877666 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0019
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelak....elDPdgedasvdldtfl 59 
                  F+++D++k G +   +l  +L+++ + + ++ +L++       e D dg  + + ++ f+
  CCD24777.1  98 AFKIYDIDKDGFISNGELFIVLKIMVGSNLNDEQLQQIVDrtimENDLDGD-GHLSFEEFK 157
                 69**********************999999999999865411113344443.556666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       528  (0.0294495); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1310.18
//
Query:       CCD24778.1  [L=592]
Description: hypothetical protein NDAI_0D04650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-67  227.9   0.7    4.2e-67  226.7   0.7    1.6  1  Diphthamide_syn  Putative diphthamide synthesis protein
  ------ inclusion threshold ------
      0.021   15.0   0.0      0.047   13.9   0.0    1.5  1  Metallophos_2    Calcineurin-like phosphoesterase superfamily
      0.054   14.3   0.0        7.9    7.3   0.0    2.6  2  GST_N_4          Glutathione S-transferase N-terminal domain
       0.18   12.2   2.0        2.5    8.5   0.3    2.8  3  Eaf7             Chromatin modification-related protein EAF7


Domain annotation for each model (and alignments):
>> Diphthamide_syn  Putative diphthamide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.7   0.7   9.3e-71   4.2e-67       1     303 []      84     440 ..      84     440 .. 0.86

  Alignments for each domain:
  == domain 1  score: 226.7 bits;  conditional E-value: 9.3e-71
  Diphthamide_syn   1 fPegllpdsaeiadil.eef......gae..........vvilgDttYGaCcvdevaaehlgadllvHyGhsclspvdrlpvlYvfveieldve 77 
                      fP+ l++ds+ i +il ++f        +          +++l+Dt Y+aCcvdevaaeh++adl+vH+G++cl+ +++lpv+Y +++  l ++
       CCD24778.1  84 FPDPLIKDSTFITNILqDKFaelktaT-SkeekntiipkFWVLADTAYSACCVDEVAAEHVNADLVVHFGDACLNAIQKLPVVYSLGRPYLPLH 176
                      9***************88888776551.05567888999******************************************************* PP

  Diphthamide_syn  78 hlvetlkknf.kekkkivlvstiqyahaleevkeeleee.gyevv...kvpqsekplspgevlgctspklkee..................... 145
                      +++e++k++f ++++k++l+s+  y+ +++ + ++l++  gye++   +++ + +   + ++lg + + + +e                     
       CCD24778.1 177 DIIEKFKTQFpDKSSKVCLMSNSAYTLHMKPLFDHLTDVeGYENLiysQINAA-MASDQATILGEEHSLTATEsdkcvvtlgsrllfsrnqdlt 269
                      **********666888***************9999984479999955434433.66778888888666665557788***************** PP

  Diphthamide_syn 146 ...............eeevdailyigdg.rfhllslmlsnpklpvyrydpyskklteesydakkllrrRyaaiekakdakkvGiivgtlgvqgr 223
                                     ++e+d ++++  + + hll l    +  +v+ yd  ++++ +        +++Ry+ ++ a++a  +Gi+v+tl+  ++
       CCD24778.1 270 igngiqddeetltilQNEYD-LFHLTVPqDPHLLYLTTVFK--SVVLYDNKNENVITG---PFPSMMKRYKYMSVARTAGCIGILVNTLSLRNT 357
                      ****9888777766544444.56665540456665555554..588899999865544...47889**************************** PP

  Diphthamide_syn 224 lelverlkkllkeagkksylvlvgelnpakLanfaeidafVlvaCprlsid..dgkeFekPvltpyElevalg.erewteeyv 303
                       e++++l kl++++gkk+yl++vg++n+akLanf+ +d++++++C ++ i+  + +eF+kP++tpyEl +al+ e +wt+++v
       CCD24778.1 358 KETINQLTKLIRNSGKKHYLFVVGKPNVAKLANFEPVDIWCILGCSQSGIIidQINEFYKPIITPYELTMALNdEVTWTGKWV 440
                      **********************************99***********998765889***********************9985 PP

>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     1e-05     0.047       3     141 ..     122     254 ..     121     265 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
  Metallophos_2   3 laiiSDlHsnldaleavlealkevgvdaiihaGDleeeepevleellelapvlaVrGNnDeevveedvlreaaelgtdlp.eeaelelagekvlli 97 
                    + +++D+  +   +++v++++ ++  d+++h GD+      +l+++++l pv++  G+         +++  ++++t++p ++ ++ l   +++ +
     CCD24778.1 122 FWVLADTAYSACCVDEVAAEHVNA--DLVVHFGDA------CLNAIQKL-PVVYSLGRPY-----LPLHDIIEKFKTQFPdKSSKVCLMSNSAYTL 203
                    6677888888888999999*9999..********7......99999996.999999*999.....89999*********9888888899999**** PP

  Metallophos_2  98 Hgdpl........gvkdalaellkeaeegsdvvvcGHtHvpevekeggvlvv 141
                    H +pl        g+++ + + +++a++ ++  ++G  H  ++++ +++ vv
     CCD24778.1 204 HMKPLfdhltdveGYENLIYSQINAAMASDQATILGEEHSLTATESDKC-VV 254
                    **988**996666666666666666777777********9999998654.34 PP

>> GST_N_4  Glutathione S-transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0018       7.9      41      74 ..      86     118 ..      61     136 .. 0.83
   2 ?    4.2   0.0     0.016        71      32      94 ..     160     221 ..     149     226 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0018
     GST_N_4  41 gelliadsefiieflkekgvdldaelseeqkada 74 
                 ++ li ds+fi + l++k+++l++  s+e+k++ 
  CCD24778.1  86 DP-LIKDSTFITNILQDKFAELKTATSKEEKNTI 118
                 34.9***************999988888888765 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.016
     GST_N_4  32 gklPfielngelliadsefiieflkekgvdldaelseeqkadaralkalveeklynallyerw 94 
                 +klP++   g+ ++   + iie  k++++d+++++     +     ++ + ++l++++ ye  
  CCD24778.1 160 QKLPVVYSLGR-PYLPLHDIIEKFKTQFPDKSSKVCLMSNSAYTLHMKPLFDHLTDVEGYENL 221
                 69999988778.7777799*********99996666644444455555555558888888765 PP

>> Eaf7  Chromatin modification-related protein EAF7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.3   0.00055       2.5      40      79 ..      37      76 ..      25      86 .. 0.76
   2 ?    1.5   0.0     0.085   3.8e+02      32      75 ..     100     142 ..      90     149 .. 0.85
   3 ?   -2.3   0.0       1.3   5.8e+03      51      51 ..     481     481 ..     447     521 .. 0.54

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00055
        Eaf7 40 qkekpksgkhtsiediwekLktlYdLkaldelenekeeee 79
                +  +   g ht++e+++ek++ +Y L++l    ne+++++
  CCD24778.1 37 EDREFYLGPHTTLEELREKINDYYALDELITFLNENQDKN 76
                555566789******************9877666545444 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.085
        Eaf7  32 kpdkytllqkekpksgkhtsiediwekLktlYdLkaldelenek 75 
                 + dk+ +l++ + k++k t i++ w   +t Y   ++de+  e+
  CCD24778.1 100 Q-DKFAELKTATSKEEKNTIIPKFWVLADTAYSACCVDEVAAEH 142
                 4.688999*************************99999997765 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.3
        Eaf7  51 s 51 
                 +
  CCD24778.1 481 K 481
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      445  (0.0248201); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.32s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3962.50
//
Query:       CCD24779.1  [L=372]
Description: hypothetical protein NDAI_0D04660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-29  101.2  66.6    1.6e-08   34.7   2.8    7.0 10  LRR_4     Leucine Rich repeats (2 copies)
    4.5e-21   74.4  32.7    3.4e-10   39.6   2.8    6.3  8  LRR_8     Leucine rich repeat
    7.5e-16   58.1  24.7    3.6e-07   29.9   2.3    5.0  5  LRR_9     Leucine-rich repeat
  ------ inclusion threshold ------
       0.22   12.2  32.5        2.7    8.9   0.4    8.8  9  LRR_1     Leucine Rich Repeat
       0.28   11.3  21.0       0.32   11.2   0.6    6.1  6  LRR_6     Leucine Rich repeat
        1.2   10.0  13.4        7.2    7.5   1.7    4.2  4  DUF3744   ATP-binding cassette cobalt transporter
        3.2    8.1   6.0        3.7    7.9   0.0    3.2  3  DUF1884   Domain of unknown function (DUF1884)


Domain annotation for each model (and alignments):
>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   1.0   0.00037      0.94       3      41 ..      83     117 ..      76     123 .. 0.73
   2 !   11.1   0.6   0.00016      0.41       2      40 ..     101     140 ..     100     142 .. 0.84
   3 !   19.7   6.0   3.3e-07   0.00085       3      42 ..     126     165 ..     124     169 .. 0.82
   4 !   24.4   5.2   1.1e-08   2.9e-05       2      39 ..     170     206 ..     169     209 .. 0.88
   5 !   22.3   3.1     5e-08   0.00013       1      43 [.     191     237 ..     191     238 .. 0.84
   6 !   21.7   1.1   7.8e-08    0.0002       2      43 ..     216     256 ..     215     257 .. 0.92
   7 !   34.7   2.8   6.3e-12   1.6e-08       1      44 []     237     279 ..     237     279 .. 0.94
   8 !   33.0   3.7   2.1e-11   5.4e-08       1      43 [.     259     300 ..     259     303 .. 0.93
   9 !   20.6   0.2   1.7e-07   0.00044       1      37 [.     281     316 ..     281     330 .. 0.88
  10 !    9.1   0.0   0.00072       1.8       1      36 [.     303     342 ..     303     347 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00037
                 --EEE--SS---E-S-HHH-TT--EEE-.-S-----GGG CS
       LRR_4   3 LevLdLsnNqltdiplleklpnLkeLdLsgNnlitdlde 41 
                 L++L +++  l +++l + ++ L++L L + nli++++e
  CCD24779.1  83 LIHLKIRS--LEELNLYR-FKELTQLCL-RQNLIESISE 117
                 45555555..55555555.999999988.6669999986 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00016
                 S--EEE--SS---E-S-HHH-TT..--EEE-.-S-----GG CS
       LRR_4   2 nLevLdLsnNqltdiplleklpn..LkeLdLsgNnlitdld 40 
                  L+ L+L++N + +i+  e lp+   + Ld  +N +i+ ++
  CCD24779.1 101 ELTQLCLRQNLIESISEVEVLPHdkITDLDFYDN-RIKHIS 140
                 79***************66688888******666.998885 PP

  == domain 3  score: 19.7 bits;  conditional E-value: 3.3e-07
                 --EEE--SS---E-S-.HHH-TT--EEE-.-S-----GGGG CS
       LRR_4   3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdldeL 42 
                  + Ld+ +N+++ i++  + l+nLk LdLs+N +i+++ ++
  CCD24779.1 126 ITDLDFYDNRIKHISSnVNYLTNLKNLDLSFN-KIKNIKNI 165
                 678*********88884555*********888.99888765 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 1.1e-08
                 S--EEE--SS---E-S-HHH-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdl 39 
                 nLe+L++ +N++++i++l+ l+nLk L L gN +++ l
  CCD24779.1 170 NLENLYFVQNKISKIENLSTLKNLKNLELGGN-RLQEL 206
                 9****************************888.55544 PP

  == domain 5  score: 22.3 bits;  conditional E-value: 5e-08
                 SS--EEE--SS---E-S-..HHH-TT--EEE-.-S..-----GGGGX CS
       LRR_4   1 pnLevLdLsnNqltdipl..leklpnLkeLdLsgN..nlitdldeLk 43 
                 +nL++L L++N+l++++   + +l nL+e++L  N  +++ +l++Lk
  CCD24779.1 191 KNLKNLELGGNRLQELEKdaFVGLENLQEIWLGKNaiPKLVNLSPLK 237
                 79****************8888**********778555556667776 PP

  == domain 6  score: 21.7 bits;  conditional E-value: 7.8e-08
                 S--EEE--SS---E-S-HHH-TT--EEE-.-S-----GGGGX CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdldeLk 43 
                 nL++++L+ N + ++ +l+ l+nLk L++  N +++++++L+
  CCD24779.1 216 NLQEIWLGKNAIPKLVNLSPLKNLKILSIQAN-RLKKIEGLE 256
                 9****************999*********555.*****9997 PP

  == domain 7  score: 34.7 bits;  conditional E-value: 6.3e-12
                 SS--EEE--SS---E-S-HHH-TT--EEE-.-S-----GGGGXX CS
       LRR_4   1 pnLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdldeLkn 44 
                 +nL++L+++ N+l++i++le l+nL+eL++ +Nn+i++l++L+n
  CCD24779.1 237 KNLKILSIQANRLKKIEGLEELTNLEELYV-SNNFISKLEGLEN 279
                 79*******88*******************.666******9986 PP

  == domain 8  score: 33.0 bits;  conditional E-value: 2.1e-11
                 SS--EEE--SS---E-S-HHH-TT--EEE-.-S-----GGGGX CS
       LRR_4   1 pnLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdldeLk 43 
                 +nLe+L+ snN ++++++le++++L+ Ld++ N +it++++++
  CCD24779.1 259 TNLEELYVSNNFISKLEGLENNKKLTILDITAN-KITKIENIS 300
                 7*****************************777.999998875 PP

  == domain 9  score: 20.6 bits;  conditional E-value: 1.7e-07
                 SS--EEE--SS---E-S-HHH-TT--EEE-.-S---- CS
       LRR_4   1 pnLevLdLsnNqltdiplleklpnLkeLdLsgNnlit 37 
                 ++L++Ld+  N++t+i++++ l++L+ L+ s+N +i+
  CCD24779.1 281 KKLTILDITANKITKIENISHLKQLTDLWASFN-KID 316
                 69*******88*******999*********888.663 PP

  == domain 10  score: 9.1 bits;  conditional E-value: 0.00072
                 SS--EEE--SS---.E-S-HH....H-TT--EEE-.-S--- CS
       LRR_4   1 pnLevLdLsnNqlt.diplle....klpnLkeLdLsgNnli 36 
                 ++L+ L+ s N++  ++++l+     lp  ++++L gN +i
  CCD24779.1 303 KQLTDLWASFNKIDqSFQSLGeemtDLPVFETIYLEGN-PI 342
                 589*************9999976644666999***999.54 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.6   0.00069       1.8       7      59 ..      82     134 ..      78     136 .. 0.78
   2 !   14.1   4.4   1.2e-05      0.03       2      61 .]     101     159 ..     100     159 .. 0.92
   3 !   14.0   7.4   1.2e-05     0.032       5      61 .]     128     181 ..     124     181 .. 0.90
   4 !   32.7   2.3   1.8e-11   4.7e-08       2      61 .]     170     227 ..     169     227 .. 0.91
   5 !   39.6   2.8   1.3e-13   3.4e-10       2      61 .]     192     249 ..     191     249 .. 0.97
   6 !   18.4   1.9   5.3e-07    0.0014      24      59 ..     236     269 ..     231     271 .. 0.94
   7 !   23.6   2.9   1.3e-08   3.3e-05       1      61 []     259     315 ..     259     315 .. 0.94
   8 ?    0.5   0.0       0.2   5.1e+02      43      61 .]     324     342 ..     318     342 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00069
                 E-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS CS
       LRR_8   7 dLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgN 59 
                 dL + ++ sl+    ++++ L+ L L++Nl++++s+       +++ Ld  +N
  CCD24779.1  82 DLIHLKIRSLEELNLYRFKELTQLCLRQNLIESISEVEVLPHDKITDLDFYDN 134
                 5556678889999999999***************9987777777776666555 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.2e-05
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +Lt L L+ N ++s++        + + Ld  +N+++++s      L++L+ LdLs N++
  CCD24779.1 101 ELTQLCLRQNLIESISEVEVLPHDKITDLDFYDNRIKHIS-SNVNYLTNLKNLDLSFNKI 159
                 699999*********99888888****************8.77899************97 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 1.2e-05
                 EEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   5 sLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                  Ld  +Nr+++++  + + l+nLk LdLs N+++ +  + ++ L +L+ L+  +N++
  CCD24779.1 128 DLDFYDNRIKHISSNVNY-LTNLKNLDLSFNKIKNI--KNIDKLINLENLYFVQNKI 181
                 56667899****999988.*****************..5************999987 PP

  == domain 4  score: 32.7 bits;  conditional E-value: 1.8e-11
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 nL++L+   N++++++    ++l+nLk L+L+ N+l+ l+++af+gL++L+++ L  N +
  CCD24779.1 170 NLENLYFVQNKISKIEN--LSTLKNLKNLELGGNRLQELEKDAFVGLENLQEIWLGKNAI 227
                 89999999999999975..6778*****************************99999976 PP

  == domain 5  score: 39.6 bits;  conditional E-value: 1.3e-13
                 T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 nL++L L  Nrl++l+++aF gl+nL+++ L+ N +  l    +s L++L+ L ++ NrL
  CCD24779.1 192 NLKNLELGGNRLQELEKDAFVGLENLQEIWLGKNAIPKL--VNLSPLKNLKILSIQANRL 249
                 9**************************************..59***************98 PP

  == domain 6  score: 18.4 bits;  conditional E-value: 5.3e-07
                 -TT--EEE--SS---GGGGGGGTT--S-.EEE--SS CS
       LRR_8  24 lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgN 59 
                 l+nLk+L++  N+l+ ++   ++ L++L++L++s+N
  CCD24779.1 236 LKNLKILSIQANRLKKIE--GLEELTNLEELYVSNN 269
                 89***************6..***************9 PP

  == domain 7  score: 23.6 bits;  conditional E-value: 1.3e-08
                 TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +nL++L++snN +++l+    +++++L++Ld++ N++t ++   +s+L++L+ L  s N++
  CCD24779.1 259 TNLEELYVSNNFISKLEG--LENNKKLTILDITANKITKIE--NISHLKQLTDLWASFNKI 315
                 59**************86..7999****************6..***********9999987 PP

  == domain 8  score: 0.5 bits;  conditional E-value: 0.2
                 GGGTT--S-.EEE--SS-- CS
       LRR_8  43 gafsgLpsLrsLdLsgNrL 61 
                 + + +Lp  + ++L+gN++
  CCD24779.1 324 EEMTDLPVFETIYLEGNPI 342
                 67789999999******87 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.3     0.013        33      43      81 ..      77     117 ..      68     123 .. 0.72
   2 !   18.3   1.6     5e-07    0.0013      54     117 ..     115     176 ..     113     178 .. 0.90
   3 !   29.9   2.3   1.4e-10   3.6e-07      49     116 ..     176     243 ..     173     247 .. 0.92
   4 !   13.2   1.0   1.8e-05     0.046      63     111 ..     236     282 ..     236     287 .. 0.82
   5 !   14.3   0.2   8.2e-06     0.021      46     101 ..     285     343 ..     279     350 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.013
       LRR_9  43 qfdtidlsdndirkldgfPl..lkrlktlllnnnrivriae 81 
                   d idl   +ir l+++ l  +k l  l l +n i  i+e
  CCD24779.1  77 DIDVIDLIHLKIRSLEELNLyrFKELTQLCLRQNLIESISE 117
                 46778888888888887665225677788888888887776 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 5e-07
       LRR_9  54 irkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklel 117
                 i +++ +P+  ++  l + +nri +i+ +++ +l nl++l l+ n+++++ ++d l++l++l +
  CCD24779.1 115 ISEVEVLPH-DKITDLDFYDNRIKHISSNVN-YLTNLKNLDLSFNKIKNIKNIDKLINLENLYF 176
                 677888887.6799999************96.899**************************976 PP

  == domain 3  score: 29.9 bits;  conditional E-value: 1.4e-10
       LRR_9  49 lsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkkle 116
                 +  n+i k++++  lk lk l l  nr+  ++++    l nl+e+ l +n + +l++l Pl +lk l+
  CCD24779.1 176 FVQNKISKIENLSTLKNLKNLELGGNRLQELEKDAFVGLENLQEIWLGKNAIPKLVNLSPLKNLKILS 243
                 678******************************************************99998777664 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 1.8e-05
       LRR_9  63 lkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlas 111
                 lk lk+l+++ nr+ +i eglee l nleel ++nn + +l  l+   +
  CCD24779.1 236 LKNLKILSIQANRLKKI-EGLEE-LTNLEELYVSNNFISKLEGLENNKK 282
                 6899**********999.68976.78************99988765444 PP

  == domain 5  score: 14.3 bits;  conditional E-value: 8.2e-06
       LRR_9  46 tidlsdndirkldgfPllkrlktlllnnnrivriaegleev...lPnleelvltnnelq 101
                  +d++ n+i k++++ +lk+l  l  + n+i +  + l+e    lP +e++ l +n +q
  CCD24779.1 285 ILDITANKITKIENISHLKQLTDLWASFNKIDQSFQSLGEEmtdLPVFETIYLEGNPIQ 343
                 57999***************************999999885333799999999999887 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.7      0.82   2.1e+03       1       7 [.      90      96 ..      90     118 .. 0.55
   2 ?   -2.3   0.0       4.8   1.2e+04       4      18 ..     128     142 ..     125     142 .. 0.72
   3 ?    4.0   2.4     0.043   1.1e+02       1      13 [.     148     165 ..     148     188 .. 0.79
   4 ?    7.2   0.1    0.0036       9.3       1      23 []     192     214 ..     192     214 .. 0.91
   5 ?   -0.8   0.1       1.6   4.2e+03       1      13 [.     216     228 ..     216     237 .. 0.77
   6 ?   -0.4   0.1       1.2   3.1e+03       1      12 [.     238     249 ..     238     256 .. 0.79
   7 ?    8.9   0.4     0.001       2.7       1      14 [.     260     276 ..     260     280 .. 0.76
   8 ?    3.0   0.0      0.09   2.3e+02       1      22 [.     282     321 ..     282     322 .. 0.66
   9 ?    3.6   0.0     0.056   1.4e+02       3      18 ..     333     347 ..     332     358 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.82
       LRR_1  1 nLrhLdL 7 
                +L++L+L
  CCD24779.1 90 SLEELNL 96
                5888887 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 4.8
       LRR_1   4 hLdLsnnpllglppn 18 
                  Ld  +n++ ++++n
  CCD24779.1 128 DLDFYDNRIKHISSN 142
                 588899998777665 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.043
       LRR_1   1 nLrhLdLsnnpl.....l 13 
                 nL+ LdLs n +     +
  CCD24779.1 148 NLKNLDLSFNKIkniknI 165
                 8*********98444442 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0036
       LRR_1   1 nLrhLdLsnnpllglppnsfqnL 23 
                 nL+ L L++n+l  l++++f +L
  CCD24779.1 192 NLKNLELGGNRLQELEKDAFVGL 214
                 8***********99999999776 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 1.6
       LRR_1   1 nLrhLdLsnnpll 13 
                 nL+++ L+ n ++
  CCD24779.1 216 NLQEIWLGKNAIP 228
                 8999999998765 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 1.2
       LRR_1   1 nLrhLdLsnnpl 12 
                 nL+ L +  n+l
  CCD24779.1 238 NLKILSIQANRL 249
                 89***9988877 PP

  == domain 7  score: 8.9 bits;  conditional E-value: 0.001
       LRR_1   1 nLrhLdLsnnpl...lg 14 
                 nL++L++snn++   +g
  CCD24779.1 260 NLEELYVSNNFIsklEG 276
                 8**********844455 PP

  == domain 8  score: 3.0 bits;  conditional E-value: 0.09
       LRR_1   1 nLrhLdLsnnpl..................lglppnsfqn 22 
                 +L+ Ld++ n +                  ++++++sfq+
  CCD24779.1 282 KLTILDITANKItkienishlkqltdlwasFNKIDQSFQS 321
                 7999999999986666666666666666666666666665 PP

  == domain 9  score: 3.6 bits;  conditional E-value: 0.056
       LRR_1   3 rhLdLsnnpllglppn 18 
                 ++++L++np+ +l+++
  CCD24779.1 333 ETIYLEGNPI-QLQNE 347
                 689******9.88876 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.5   3.7e+03       3      10 ..      89      96 ..      87      96 .. 0.87
   2 ?   11.2   0.6   0.00012      0.32       2      16 ..     146     160 ..     145     161 .. 0.89
   3 ?    2.4   0.3     0.082   2.1e+02       3      15 ..     191     203 ..     189     204 .. 0.86
   4 ?   -2.4   0.1       2.8   7.1e+03       4      14 ..     238     248 ..     236     250 .. 0.78
   5 ?    0.7   0.1      0.28   7.2e+02       3      13 ..     259     269 ..     257     272 .. 0.87
   6 ?    7.6   0.2    0.0017       4.3       1      16 [.     279     294 ..     279     295 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.5
       LRR_6  3 thLteLdL 10
                ++L+eL+L
  CCD24779.1 89 RSLEELNL 96
                69****98 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00012
       LRR_6   2 nthLteLdLsgNdIg 16 
                  t+L+ LdLs+N+I 
  CCD24779.1 146 LTNLKNLDLSFNKIK 160
                 589**********97 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.082
       LRR_6   3 thLteLdLsgNdI 15 
                  +L+ L+L gN +
  CCD24779.1 191 KNLKNLELGGNRL 203
                 58*********87 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 2.8
       LRR_6   4 hLteLdLsgNd 14 
                 +L+ L+++ N 
  CCD24779.1 238 NLKILSIQANR 248
                 79999998776 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.28
       LRR_6   3 thLteLdLsgN 13 
                 t+L+eL +s N
  CCD24779.1 259 TNLEELYVSNN 269
                 89*******99 PP

  == domain 6  score: 7.6 bits;  conditional E-value: 0.0017
       LRR_6   1 snthLteLdLsgNdIg 16 
                 +n +Lt Ld++ N+I+
  CCD24779.1 279 NNKKLTILDITANKIT 294
                 699***********98 PP

>> DUF3744  ATP-binding cassette cobalt transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.9   1.5e+04      31      45 ..      88     102 ..      79     116 .. 0.71
   2 ?    7.2   0.7    0.0035       8.9      14      37 ..     145     168 ..     144     186 .. 0.90
   3 ?    0.2   0.1       0.5   1.3e+03      25      38 ..     184     197 ..     177     212 .. 0.60
   4 ?    7.5   1.7    0.0028       7.2      25      73 .]     252     301 ..     224     301 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.9
     DUF3744  31 lsnleklalsqdkek 45 
                 + +le+l+l ++ke 
  CCD24779.1  88 IRSLEELNLYRFKEL 102
                 566777777666554 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0035
     DUF3744  14 YitaLKkagidltslnqlsnlekl 37 
                 Y+t LK+++ + +++++++n++kl
  CCD24779.1 145 YLTNLKNLDLSFNKIKNIKNIDKL 168
                 9********************998 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.5
     DUF3744  25 ltslnqlsnlekla 38 
                 +++l+ l+nl++l+
  CCD24779.1 184 IENLSTLKNLKNLE 197
                 44455555555555 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0028
     DUF3744  25 ltslnqlsnleklalsq.dkeklkewfekqkapkkekekeplLelenlsf 73 
                 ++ l++l+nle+l +s+ +  kl+   +++k +    +++++ ++en+s+
  CCD24779.1 252 IEGLEELTNLEELYVSNnFISKLEGLENNKKLTILDITANKITKIENISH 301
                 56679*******************************************95 PP

>> DUF1884  Domain of unknown function (DUF1884)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0014       3.7      40      66 ..      68      94 ..      55      97 .. 0.83
   2 ?    1.7   0.2      0.12     3e+02      33      72 ..     172     212 ..     157     219 .. 0.81
   3 ?   -1.9   0.1       1.6   4.1e+03      41      59 ..     248     265 ..     238     288 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0014
                HHHHHHHT------EETTEEEEE-GGG CS
     DUF1884 40 ealkkeleeeeevtelsnlkveileeL 66
                 +l  +l e+ +v++l+ lk++ leeL
  CCD24779.1 68 SDLTTDLPEDIDVIDLIHLKIRSLEEL 94
                4577789999****************9 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHT------EETTEEE..EE-GGGTTEEEE CS
     DUF1884  33 eaieflkealkkeleeeeevtelsnlkv..eileeLGgDavv 72 
                 e + f+++++ k +e+   + +l nl +  ++l+eL +Da v
  CCD24779.1 172 ENLYFVQNKISK-IENLSTLKNLKNLELggNRLQELEKDAFV 212
                 556788899986.88888888898888755789999999977 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.6
                 HHHHHHT------EETTEE CS
     DUF1884  41 alkkeleeeeevtelsnlk 59 
                  lkk +e+ ee+t+l +l 
  CCD24779.1 248 RLKK-IEGLEELTNLEELY 265
                 4553.55555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       861  (0.0480228); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.47
# Mc/sec: 2398.83
//
Query:       CCD24780.1  [L=459]
Description: hypothetical protein NDAI_0D04670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-44  149.6   0.0    1.4e-43  149.0   0.0    1.3  1  tRNA-synt_2b    tRNA synthetase class II core domain (G, H, P
    5.9e-17   61.6   0.0    9.7e-17   60.9   0.0    1.4  1  HGTP_anticodon  Anticodon binding domain


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.0   0.0   1.5e-47   1.4e-43       5     179 .]     119     330 ..     113     330 .. 0.91

  Alignments for each domain:
  == domain 1  score: 149.0 bits;  conditional E-value: 1.5e-47
                   ETTSEEEEE-SSSHHHHHHHHHHHEEEBGG.SSEEEEEEEEEEBTTTS.TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT...S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..x RF
  tRNA-synt_2b   5 drndreyiLkPtneetfvelirdevlrskr.LPlklyqiqtkyRdEks.dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlgl..e 97 
                   d +++ + LkP+n+++++ ++++    s++ LP++++++++++R+E+s +++GL+R+r+Fhq+dg++f++++++++++ +++k i+  + +++   +
    CCD24780.1 119 DIEKETFGLKPMNCPGHCVIFNKT-DHSYNeLPIRYSDFSPLHRNEPSgSLSGLTRLRKFHQDDGHIFCTPEQVEQEILNCLKFIDLCYIKVFKltN 214
                   667899****************99.999777****************99999*************************************99963214 PP

                   CEEEEEEGTTSC..................................BTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTSSEEEEE CS
                   xxxxxxxxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  98 fraiielmsaks..................................adykdkkefeavsesltkgieigtiqklgtrlserlgatvldennreksvi 160
                    + i  +++ ++                                  ++y++k+++++ ++  +k ++++tiq + ++l+er++++++d +n +k++i
    CCD24780.1 215 GYTINFSTRPTDhyigelpvwnhaenvlqsiltksgkpwelnegdgVFYGPKLDIMIKDH-NGKSHQVATIQLD-FQLPERFDLKYKDADNTYKRPI 309
                   45555555544478889999999999*********************************9.9************.********************** PP

                   EEEEE.EE.HHHHHHHHHHHH CS
                   xxxxx.xx.xxxxxxxxxxxx RF
  tRNA-synt_2b 161 micaa.ig.veRllsaileqn 179
                   mi++a +g veR+l+++++qn
    CCD24780.1 310 MIHRAvFGsVERFLGLLIDQN 330
                   ******************998 PP

>> HGTP_anticodon  Anticodon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   1.1e-20   9.7e-17       1      92 [.     342     452 ..     342     454 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 1.1e-20
                     SEEEEESSSSHHHHHHHHHHHHHHHHTTT..................SEEEEESSSSTHHHHHHHHHHTT-SEEEEE-HHHHHHTEEEEEETTTC CS
  HGTP_anticodon   1 qvvviplnekaeeleeyakklaeeLraag..................irvelddsnesigkkireadllgipfavvvGekelekgtvtvrdrdtr 77 
                     qv++ip+n+k+++++  ak l ++Lr                     ++++ldd++e +g++i++a l+ + + +++G++e+++g+ +v++rd+r
      CCD24780.1 342 QVMIIPINTKNQDHLATAKMLVDKLRGTTtgidnannlepipmhgyqFNADLDDRSEPVGYRIKDAILKYYSYLIIIGDEEVKTGKFSVKERDNR 436
                     8*********999*************98899**************************************************************** PP

                     .EEEEEETTHHHHHHH CS
  HGTP_anticodon  78 .eqervsldelveklk 92 
                        + ++ de++ek++
      CCD24780.1 437 sNLQHLTTDEIIEKFS 452
                     6669********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3556.27
//
Query:       CCD24781.1  [L=632]
Description: hypothetical protein NDAI_0D04680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-05   23.3   3.2    0.00012   22.2   3.2    1.6  1  CHCH      CHCH domain


Domain annotation for each model (and alignments):
>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   3.2   6.5e-09   0.00012       1      34 [.     564     599 ..     564     599 .. 0.97

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6.5e-09
                 THHHHHHHHHHHHHCTSS..TTTTHHHHHHHHHHHC CS
        CHCH   1 CgeefkeylkClkdnsde..fskCrkefeafkeCvk 34 
                 Cg efk +++C+ ++  e  +s+C + f++++ C++
  CCD24781.1 564 CGNEFKIAFSCFVYSKTEpkGSDCWDKFKNMQTCFR 599
                 *****************999**************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1496  (0.0834402); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4310.21
//
Query:       CCD24782.1  [L=200]
Description: hypothetical protein NDAI_0D04690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-15   56.2   1.2    3.7e-15   55.5   1.2    1.3  1  Synaptobrevin    Synaptobrevin
    5.8e-12   45.5   0.0      1e-11   44.7   0.0    1.4  1  Longin           Regulated-SNARE-like domain
  ------ inclusion threshold ------
      0.055   13.7   2.7      0.077   13.2   2.7    1.2  1  Fib_alpha        Fibrinogen alpha/beta chain family
      0.073   13.3   0.4       0.84    9.9   0.0    2.3  3  Cyclase_polyket  Polyketide synthesis cyclase
      0.076   13.1   3.2      0.072   13.2   2.0    1.6  1  DUF3461          Protein of unknown function (DUF3461)


Domain annotation for each model (and alignments):
>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   1.2     1e-18   3.7e-15       2      58 ..     138     194 ..     137     198 .. 0.96

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1e-18
                    XXHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHH CS
  Synaptobrevin   2 ndklakikaevdevkdimkeNidkvlergekldeLvdktenLqssaqqFkkqarklk 58 
                    +d ++k+++e+de+k ++++ i++vl+rgekld+Lvdk+e L++s++ F kqa+k +
     CCD24782.1 138 ADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTASSKMFYKQAKKTN 194
                    789**************************************************9976 PP

>> Longin  Regulated-SNARE-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   2.9e-15     1e-11       2      72 ..      45     112 ..      44     126 .. 0.83

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 2.9e-15
      Longin   2 klilkkishss.pqkltythdsytfhylaed.gltylviadesyprrlaFafLeeikreFlakygtaktadaa 72 
                 ++++++    + +q++++++++y+ h++a++ g++ + i+d++yp r a+++L++i +e+l ++ ++ t +++
  CCD24782.1  45 ETVASRT---NpGQRQSIEEGDYIGHVYARSeGICGVLITDKEYPVRPAYTLLNKILDEYLVAHTPQ-T-WQN 112
                 5666664...3589*****999*******888******************************99974.4.443 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.7   2.2e-05     0.077      49     116 ..     112     178 ..      98     198 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.2e-05
                 CHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH CS
   Fib_alpha  49 nstkeaee.lvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneq 116
                 n t++ e+  +ke+++++++ q  ++    +i k+++el+e  + l++ti +  ++ ++L n++++ e+
  CCD24782.1 112 NVTETNESlKMKELDTYITKYQDPSQ--ADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSES 178
                 54444443158999999999999998..799********************************998775 PP

>> Cyclase_polyket  Polyketide synthesis cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00023      0.84      66      93 ..      87     114 ..      67     120 .. 0.88
   2 ?   -0.1   0.0      0.32   1.1e+03      75      87 ..     123     135 ..     115     148 .. 0.74
   3 ?    0.6   0.1      0.18   6.6e+02       5      29 ..     129     153 ..     125     159 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00023
  Cyclase_polyket  66 ekpefkkvserlseyvspydpetWrspk 93 
                       +p+++ +++ l ey+ +++p+tW++ +
       CCD24782.1  87 VRPAYTLLNKILDEYLVAHTPQTWQNVT 114
                      5799********************9865 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.32
  Cyclase_polyket  75 erlseyvspydpe 87 
                      ++l +y+++y+  
       CCD24782.1 123 KELDTYITKYQDP 135
                      6899999999754 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.18
  Cyclase_polyket   5 ivarmkpgseeevakifaesDatel 29 
                      i    +p++++++ k+ +e D+t++
       CCD24782.1 129 ITKYQDPSQADAIMKVQQELDETKI 153
                      5556788899999999999998875 PP

>> DUF3461  Protein of unknown function (DUF3461)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.0     2e-05     0.072      57     121 ..     101     165 ..      92     172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2e-05
     DUF3461  57 vlvdsgseeykevseisavlrkvleeLdk.lte.kkkeekdikekllkdlkhlekvvnskikeierk 121
                  lv +  +++++v+e++++l+  ++eLd+ +t+ ++ +++d   k+ ++l     v+++ i+++ ++
  CCD24782.1 101 YLVAHTPQTWQNVTETNESLK--MKELDTyITKyQDPSQADAIMKVQQELDETKIVLHKTIENVLQR 165
                 5678899*************8..89***83577888999*************999999999988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1224  (0.0682693); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1536.50
//
Query:       CCD24783.1  [L=625]
Description: hypothetical protein NDAI_0D04700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.9e-118  394.1   0.0   5.9e-118  393.9   0.0    1.1  1  FMN_dh        FMN-dependent dehydrogenase
    3.6e-22   78.3   0.0    9.9e-22   76.9   0.0    1.8  2  Cyt-b5        Cytochrome b5-like Heme/Steroid binding domain
    7.8e-09   35.1   0.0    1.5e-08   34.2   0.0    1.4  1  Glu_synthase  Conserved region in glutamate synthase
    4.6e-05   23.0   0.0    7.7e-05   22.2   0.0    1.3  1  NMO           Nitronate monooxygenase
    0.00025   20.1   0.9     0.0098   14.9   0.1    2.7  3  IMPDH         IMP dehydrogenase / GMP reductase domain
  ------ inclusion threshold ------
      0.019   14.4   0.3        8.2    5.8   0.0    3.0  3  His_biosynth  Histidine biosynthesis protein
      0.094   12.0   0.0        3.8    6.7   0.0    2.3  2  ThiG          Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.9   0.0  2.3e-121  5.9e-118       1     347 [.     226     589 ..     226     590 .. 0.89

  Alignments for each domain:
  == domain 1  score: 393.9 bits;  conditional E-value: 2.3e-121
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTT.HHHHHHHHHHH..HTS-EEEETT CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpd.gelalaraaak..agipfvlstv 96 
                 A+k l+++a+ay+++ga+de+++ren++a+ ri ++p+vl+dvskvdlst++lG k+++P+++ +++l kl +p+ ge+ +ar++ +   ++p+++st+
  CCD24783.1 226 ASKILSNQAWAYYSSGANDEISYRENHSAYTRIFFKPKVLVDVSKVDLSTEMLGSKIEVPFYATATALCKLGNPEgGEMDIARGCGQglIKVPQMISTL 324
                 7899**********************************************************************989********9943577******* PP

                 -SS-HHHHHHH...HTT-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT--BSTT-T.G.TTGGGSTSGSCCTTH....... CS
      FMN_dh  97 astsleevaaa...aegplwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngfslppklklrnllqelakpewaaeal....... 185
                 as+s+ee++ a   +++ +w+q+y+++dr++t++++k++e++g+kal++tvD+p++g Re+dl+ +fs + + +++ ++ ++ak + +++ +       
  CCD24783.1 325 ASCSVEEIVGAapsKDQIQWYQVYINSDRNVTRHMIKKVEDLGVKALFVTVDAPFMGAREKDLKIKFSNSSQ-GPK-VMTSKAKDDINKSIVnkkeeaa 421
                 ********9852224469***********************************************9987777.433.3333344444444443445555 PP

                 ...THHHHHHCCCHB-TC--HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHHHHHH.......SS-EEEES CS
      FMN_dh 186 .kkasaaaefvgkqldpsltwddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpeiveavgg.....rievlvDg 278
                  + +++a++ ++k++dpsltw+di +l++ tklp+v+KGv+++ed+ +a+e+Gvdg+v+SNHGGRqld++ ++++ L e v  +++     ++e++vDg
  CCD24783.1 422 gDVTEGASRTLSKFIDPSLTWKDIIELKKWTKLPIVIKGVQRVEDVVKAAEIGVDGVVLSNHGGRQLDFSRPPVELLAESVPILKEkklddKLELYVDG 520
                 3444444499999****************************************************************999666654344449******* PP

                 S--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHCGGEE CS
      FMN_dh 279 GirrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeldrslls 347
                 GirrG+DvlkAl+lGA++v+lGRpfly+++++G++Gv+++++il++e+e +m+llGv+s++el+++ll+
  CCD24783.1 521 GIRRGTDVLKALCLGAKGVGLGRPFLYANSCYGKDGVQKAIDILKDEIEMSMRLLGVTSIKELNEDLLE 589
                 ****************************************************************99886 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.9     1e+04      17      35 ..      23      42 ..      10      45 .. 0.65
   2 !   76.9   0.0   3.9e-25   9.9e-22       1      73 [.     106     178 ..     106     179 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.9
                EETTEEEECTTTCCCST.TC CS
      Cyt-b5 17 airgkVYDvskflskhp.Gg 35
                  +++ Y  s+ l+khp +g
  CCD24783.1 23 LTNNNLYISSSILKKHPnTG 42
                45666676777789998644 PP

  == domain 2  score: 76.9 bits;  conditional E-value: 3.9e-25
                 EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHG.GEEEEE CS
      Cyt-b5   1 tleelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkk.ylvGkl 73 
                 t+ el khn+++d+wv+i+++VYD++ f++ hpGg  +i++ aGkD+t++f+   h ++ +e +l k ++vG l
  CCD24783.1 106 TPNELMKHNTPEDCWVVINNQVYDLTTFIQVHPGGPNIIRSNAGKDVTAIFNPL-HPPNTIETMLPKqCYVGPL 178
                 689***************************************************.*****************86 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   5.7e-12   1.5e-08     194     313 ..     445     552 ..     438     555 .. 0.79

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 5.7e-12
                   HHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEEHHHHHHB---HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHH CS
  Glu_synthase 194 iedLkevnkeakvsvKlvaeagvetiaagvakanadiilidGleGGTGAspkssikhaGlPlelalaevdqtlkeeglrdrvsliadGglktgadvv 290
                   i +Lk+ + + ++++K v ++++++++a  a+ ++d ++++ + G          + +  P+el lae +  lke++l d+++l +dGg++ g+dv+
    CCD24783.1 445 IIELKKWT-KLPIVIKGV-QRVEDVVKA--AEIGVDGVVLSNHGG-------RQLDFSRPPVEL-LAESVPILKEKKLDDKLELYVDGGIRRGTDVL 529
                   55666666.667777643.455666666..677777777765544.......356666677776.999***************************** PP

                   HHHHHT-SEEE-SHHHHHHTT-- CS
  Glu_synthase 291 kalalGAdavgigtaalialgCi 313
                   kal lGA  vg+g+  l a  C 
    CCD24783.1 530 KALCLGAKGVGLGRPFLYANSCY 552
                   *******************9995 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0     3e-08   7.7e-05     138     251 ..     456     570 ..     435     602 .. 0.72

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 3e-08
         NMO 138 vliptissvkearkvearGaDalivqGpeaGGhqGtpevgdkglfaLvpqvldavd......iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltke 230
                 ++i  +  v+++ k+++ G D +++  ++ GG q +++   +    L ++v+   +      + +   GGi ++ +v  aL+lGA+gv +g  fL ++ 
  CCD24783.1 456 IVIKGVQRVEDVVKAAEIGVDGVVL--SNHGGRQLDFSRPPV--ELLAESVPILKEkklddkLELYVDGGIRRGTDVLKALCLGAKGVGLGRPFLYANS 550
                 6777788888888888999999888..578888885554321..222222222222444566888889******************************* PP

         NMO 231 sdakdahkkklleaklddtel 251
                 +  kd ++k++     d++e+
  CCD24783.1 551 CYGKDGVQKAID-ILKDEIEM 570
                 ***999988764.33444444 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.53   1.4e+03     215     235 ..     460     480 ..     444     483 .. 0.79
   2 !   14.9   0.1   3.8e-06    0.0098     207     239 ..     513     545 ..     498     554 .. 0.85
   3 ?    2.8   0.0     0.018        47     297     328 ..     555     586 ..     548     603 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.53
                 ---SHHHHHHHHHTT-SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 215 GikysgdivkAlaaGadavml 235
                 G++  +d+vkA  +G d v+l
  CCD24783.1 460 GVQRVEDVVKAAEIGVDGVVL 480
                 799999999999999998887 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.8e-06
                 T-EEEEES---SHHHHHHHHHTT-SEEEESCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 207 gvpviaDGGikysgdivkAlaaGadavmlGsll 239
                 + ++  DGGi+   d+ kAl++Ga+ v lG+ +
  CCD24783.1 513 KLELYVDGGIRRGTDVLKALCLGAKGVGLGRPF 545
                 567889***********************9865 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.018
                 B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 297 gsvkevveqlvgglrsgmgylGaktieelkek 328
                   v++ ++ l  ++  +m  lG+++i+el+e+
  CCD24783.1 555 DGVQKAIDILKDEIEMSMRLLGVTSIKELNED 586
                 568999***********************874 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.11   2.8e+02     106     167 ..     315     374 ..     310     377 .. 0.83
   2 ?    3.7   0.0     0.014        36     185     219 ..     447     480 ..     442     484 .. 0.82
   3 ?    5.8   0.0    0.0032       8.2      74     102 ..     514     542 ..     502     555 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.11
                   HH-THHHHHHHHHHCGGGEEEEEEEEEC...EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEE CS
  His_biosynth 106 vknpelikelaekfgsqkivvaiDarrg...ykvaikgwreetgldavelakkleelgageillt 167
                   +k p++i+ la+ +  ++iv a  ++++   y+v+i+  r+     +  ++kk+e+lg++++ +t
    CCD24783.1 315 IKVPQMISTLAS-CSVEEIVGAAPSKDQiqwYQVYINSDRNV----TRHMIKKVEDLGVKALFVT 374
                   677888888888.67779999999999667899999999999....7889999999999998776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.014
                   HHHHHHSSEEEEESS--SHHHHHHHHHTTCSEEEE CS
  His_biosynth 185 elaeavkipviasGGvgsledlkelksegvdaviv 219
                   el++++k+p+++  Gv+++ed+ ++++ gvd+v++
    CCD24783.1 447 ELKKWTKLPIVI-KGVQRVEDVVKAAEIGVDGVVL 480
                   677788888776.4799999999999999999986 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0032
                   SEEEEESSSSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  74 ipvqvGGGIrsledveelleagadkviig 102
                   +++ v+GGIr+  dv ++l +ga+ v +g
    CCD24783.1 514 LELYVDGGIRRGTDVLKALCLGAKGVGLG 542
                   7889******************9988776 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0015       3.8     170     204 ..     448     481 ..     440     485 .. 0.84
   2 ?    2.7   0.0     0.026        66     175     201 ..     513     539 ..     499     549 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0015
                 HHHH-SS-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 170 iieeakvPvivDAGigspsdaaqamelGadavlln 204
                 + + +k+P+++  G+ + +d+++a e+G+d+v+l 
  CCD24783.1 448 LKKWTKLPIVI-KGVQRVEDVVKAAEIGVDGVVLS 481
                 45556999998.5******************9875 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.026
                 SS-BEEES---SHHHHHHHHHTT-SEE CS
        ThiG 175 kvPvivDAGigspsdaaqamelGadav 201
                 k+ + vD Gi++ +d+ +a+ lGa++v
  CCD24783.1 513 KLELYVDGGIRRGTDVLKALCLGAKGV 539
                 56678*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 4587.03
//
Query:       CCD24784.1  [L=616]
Description: hypothetical protein NDAI_0D04710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.2e-118  394.3   0.0   5.1e-118  394.1   0.0    1.1  1  FMN_dh        FMN-dependent dehydrogenase
    2.9e-20   72.2   0.0      6e-20   71.2   0.0    1.6  1  Cyt-b5        Cytochrome b5-like Heme/Steroid binding domain
    8.1e-09   35.1   0.0    1.4e-08   34.3   0.0    1.3  1  Glu_synthase  Conserved region in glutamate synthase
    0.00038   19.9   0.0    0.00061   19.3   0.0    1.3  1  NMO           Nitronate monooxygenase
    0.00083   18.5   2.8     0.0075   15.3   0.0    2.8  4  IMPDH         IMP dehydrogenase / GMP reductase domain
  ------ inclusion threshold ------
      0.063   12.7   0.2        8.4    5.8   0.0    2.8  3  His_biosynth  Histidine biosynthesis protein
        0.2   10.9   0.3        7.3    5.8   0.1    2.2  2  ThiG          Thiazole biosynthesis protein ThiG


Domain annotation for each model (and alignments):
>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.1   0.0    2e-121  5.1e-118       1     346 [.     217     574 ..     217     576 .. 0.89

  Alignments for each domain:
  == domain 1  score: 394.1 bits;  conditional E-value: 2e-121
                 HHCCS-HHHHHHHH--STTSHHHHHHHHGGGGEEE---SSSS-SS-B--EEETTEEESSSEEE--BSTGGGTSTT.HHHHHHHHHHH..HTS-EEEETT CS
      FMN_dh   1 ArkrlpkkafayvaggagdevtlrenraaferirlrprvlrdvskvdlsttllGqklslPvliaPvglaklahpd.gelalaraaak..agipfvlstv 96 
                 A+k l+++a+ay+++ga+de+++ren++a++ri ++pr+l+dvskvd++t++lG k ++P+++++++l kl +p+ ge  +ar++ +  +++p+++st+
  CCD24784.1 217 ASKILSNQAWAYYSSGAEDEISYRENHSAYRRIFFKPRILVDVSKVDTNTEMLGSKTDVPFYVSATALCKLGNPReGEKDIARGCGQgsTKVPQMISTL 315
                 7899*********************************************************************877*********8633788******* PP

                 -SS-HHHHHHHHT...T-EEEEEE-CSSHHHHHHHHHHHHHCTESEEEEESSTSS---BHHHHHCT--BSTT-T.G....TTGGGSTSGSCCTTH..TH CS
      FMN_dh  97 astsleevaaaae...gplwfqlyvpkdrelteellkraeaagykalvltvDtpvlgkRerdlrngfslppklklrn...llqelakpewaaealkkas 189
                 as+s++e+++aa+   +  w+q+yv++dr++t++++k++e++g+kal++tvD+p lg+Re+dl+ +f  + + +++      + + + +   ++ + a+
  CCD24784.1 316 ASCSVDEIVEAAPskdQIEWYQVYVNSDRKITKDMIKHVEKLGIKALFVTVDAPSLGRREKDLKIKFLGSDQ-GAKVmkeNPEIVNQDKNDNDS-EPAN 412
                 *********9644222699**********************************************9955444.322200022222222222222.4667 PP

                 HHHHHCCCHB-TC--HHHHHHHHHHHSSEEEEEEE-SHHHHHHHHHTTESEEEE--GGGTSSTT---HHHCHHHH.....HHHH..SS-EEEESS--SH CS
      FMN_dh 190 aaaefvgkqldpsltwddikwlreqtklplvvKGvltaedakraveaGvdgivvSNHGGRqldgapatidvLpei.....veavggrievlvDgGirrG 283
                 +a++ ++k++dpsltw+di ++r+ tklp+v+KGv+++ed+ +a+e+Gv+g+v+SNHGGRqld + ++i+ L e       +++++++e++vDgGirrG
  CCD24784.1 413 GASRALSKFIDPSLTWNDIMEMRKWTKLPIVIKGVQRVEDVVKAAEVGVNGVVLSNHGGRQLDYSRPPIELLAEAmpilkEKQLDDKLELYVDGGIRRG 511
                 777***********************************************************************9555555555679************ PP

                 HHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHCGGE CS
      FMN_dh 284 sDvlkAlalGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeldrsll 346
                 +DvlkAl+lGA++v+lGRpfly+++++G++Gv+r++e+l++ele +m+llGv+s+++l+++ll
  CCD24784.1 512 TDVLKALCLGAKGVGLGRPFLYANSCYGKDGVQRAIEMLTEELEMSMRLLGVTSIKDLSSDLL 574
                 ***********************************************************9987 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   2.3e-23     6e-20       1      73 [.      97     169 ..      97     170 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 2.3e-23
                 EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHG.GEEEEE CS
      Cyt-b5   1 tleelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkk.ylvGkl 73 
                 +++e++kh ++ d+wv+i++kVYD+++f+  hpGg ++i++ aGkD+t++f  + h + ++ek+l   +++G l
  CCD24784.1  97 SPDEVAKHHTPADCWVVIHDKVYDLTSFIPIHPGGPDIIKSNAGKDVTNIFGPI-HAPGVIEKYLPPrCYLGPL 169
                 579***************************************************.99999******99**9976 PP

>> Glu_synthase  Conserved region in glutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   5.3e-12   1.4e-08     253     313 ..     479     538 ..     429     541 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 5.3e-12
                   --HHHHHHHHHHHHHHTT-GGG-EEEEESS--SHHHHHHHHHHT-SEEE-SHHHHHHTT-- CS
  Glu_synthase 253 lPlelalaevdqtlkeeglrdrvsliadGglktgadvvkalalGAdavgigtaalialgCi 313
                    P+el lae+   lke++l d+++l +dGg++ g+dv+kal lGA  vg+g+  l a  C 
    CCD24784.1 479 PPIEL-LAEAMPILKEKQLDDKLELYVDGGIRRGTDVLKALCLGAKGVGLGRPFLYANSCY 538
                   45555.99*************************************************9995 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.4e-07   0.00061     199     242 ..     505     548 ..     420     580 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.4e-07
         NMO 199 aGGiidrrgvaaaLalGAsgvqigtrfLltkesdakdahkkkll 242
                  GGi ++ +v  aL+lGA+gv +g  fL ++ +  kd +++++ 
  CCD24784.1 505 DGGIRRGTDVLKALCLGAKGVGLGRPFLYANSCYGKDGVQRAIE 548
                 6********************************99999988774 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.5     4e+03     173     213 ..     300     343 ..     293     354 .. 0.70
   2 ?   -2.3   0.0      0.65   1.7e+03     215     235 ..     446     466 ..     430     469 .. 0.77
   3 !   15.3   0.0   2.9e-06    0.0075     207     239 ..     499     531 ..     478     541 .. 0.83
   4 ?    2.5   0.0     0.023        58     297     327 ..     541     571 ..     534     587 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.5
                 -SS-STTBHHHHHCSB---HHHHHHHHHHHHCTCT...-EEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx RF
       IMPDH 173 GiGpGsiCttrvvagvGvpqltAvaevaeaakkag...vpviaD 213
                 G G Gs  + ++++ +    +  ++e+a   ++ +   v v +D
  CCD24784.1 300 GCGQGSTKVPQMISTLASCSVDEIVEAAPSKDQIEwyqVYVNSD 343
                 88999999999999998888888888887666554322555555 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.65
                 ---SHHHHHHHHHTT-SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 215 GikysgdivkAlaaGadavml 235
                 G++  +d+vkA  +G + v+l
  CCD24784.1 446 GVQRVEDVVKAAEVGVNGVVL 466
                 799999*****9999998876 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 2.9e-06
                 T-EEEEES---SHHHHHHHHHTT-SEEEESCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 207 gvpviaDGGikysgdivkAlaaGadavmlGsll 239
                 + ++  DGGi+   d+ kAl++Ga+ v lG+ +
  CCD24784.1 499 KLELYVDGGIRRGTDVLKALCLGAKGVGLGRPF 531
                 477889***********************9865 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.023
                 B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH 297 gsvkevveqlvgglrsgmgylGaktieelke 327
                   v++ +e l+++l  +m  lG+++i++l +
  CCD24784.1 541 DGVQRAIEMLTEELEMSMRLLGVTSIKDLSS 571
                 568999**********************976 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.42   1.1e+03     110     167 ..     310     365 ..     304     368 .. 0.71
   2 ?    3.2   0.0      0.02        52     185     219 ..     433     466 ..     428     469 .. 0.80
   3 ?    5.8   0.0    0.0033       8.4      74     102 ..     500     528 ..     488     537 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.42
                   HHHHHHHHHHCGGGEEEEEEEEEC...EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEE CS
  His_biosynth 110 elikelaekfgsqkivvaiDarrg...ykvaikgwreetgldavelakkleelgageillt 167
                   ++i+ la+ +  ++iv a  ++++   y+v+++  r+     + +++k +e+lg++++ +t
    CCD24784.1 310 QMISTLAS-CSVDEIVEAAPSKDQiewYQVYVNSDRKI----TKDMIKHVEKLGIKALFVT 365
                   55555555.45556777777777556788888888888....7789999999999987766 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.02
                   HHHHHHSSEEEEESS--SHHHHHHHHHTTCSEEEE CS
  His_biosynth 185 elaeavkipviasGGvgsledlkelksegvdaviv 219
                   e+++++k+p+++  Gv+++ed+ ++++ gv++v++
    CCD24784.1 433 EMRKWTKLPIVI-KGVQRVEDVVKAAEVGVNGVVL 466
                   677788888776.4799999999999999999986 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0033
                   SEEEEESSSSSHHHHHHHHHCT-SEEEES CS
  His_biosynth  74 ipvqvGGGIrsledveelleagadkviig 102
                   +++ v+GGIr+  dv ++l +ga+ v +g
    CCD24784.1 500 LELYVDGGIRRGTDVLKALCLGAKGVGLG 528
                   7889******************9988776 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0029       7.3     167     204 ..     431     467 ..     426     488 .. 0.86
   2 ?    2.9   0.0     0.022        56     175     201 ..     499     525 ..     483     535 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0029
                 HHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEES CS
        ThiG 167 lkiiieeakvPvivDAGigspsdaaqamelGadavlln 204
                 +  +++ +k+P+++  G+ + +d+++a e+G+++v+l 
  CCD24784.1 431 IMEMRKWTKLPIVIK-GVQRVEDVVKAAEVGVNGVVLS 467
                 5567777899*9995.******************9875 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.022
                 SS-BEEES---SHHHHHHHHHTT-SEE CS
        ThiG 175 kvPvivDAGigspsdaaqamelGadav 201
                 k+ + vD Gi++ +d+ +a+ lGa++v
  CCD24784.1 499 KLELYVDGGIRRGTDVLKALCLGAKGV 525
                 56788*******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.36
# Mc/sec: 5076.31
//
Query:       CCD24785.1  [L=173]
Description: hypothetical protein NDAI_0D04720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-35  122.6   4.7    1.5e-35  122.4   4.7    1.0  1  SPC25     Microsomal signal peptidase 25 kDa subunit (SPC25)


Domain annotation for each model (and alignments):
>> SPC25  Microsomal signal peptidase 25 kDa subunit (SPC25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   4.7   8.2e-40   1.5e-35       2     161 ..      13     164 ..      12     165 .. 0.94

  Alignments for each domain:
  == domain 1  score: 122.4 bits;  conditional E-value: 8.2e-40
       SPC25   2 lKntlDdalkeyltdlgfkeshtltdvrLalGylavaiaavaflydykveFeeskpvlaiavvlYfilsgiltlystfvekntifvgkrktgskrieki 100
                 + + lD+al+++l++l++kes++l+d++L++Gy++ a+a+++fl+d+k+++++   ++ i+v+ Yf+ls++l+++++++ek + ++g+++++ +   ki
  CCD24785.1  13 VAKVLDEALPSVLETLNYKESFKLIDIKLIIGYSIAAVAGTSFLLDKKLGHKNVIAYQEILVACYFFLSALLWYFKKYIEKSVTYTGQHSQNGS---KI 108
                 55789***************************************************************************************99...** PP

       SPC25 101 tissslkklsptytltvsykdksnkgkslkakeleksvgewFdedGylveeefeqwlakll 161
                  is+s+++ +p+y +t+ ++d++ ++ +       ++ +++F+e Gyl+++ ++ w++++l
  CCD24785.1 109 AISTSYEEAEPKYYVTFVKNDTKDEEFK-----RVLETTKVFNEAGYLQTKLLHDWFQEQL 164
                 *******************888766322.....34589******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1449.25
//
Query:       CCD24786.1  [L=661]
Description: hypothetical protein NDAI_0D04730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-28   96.9   0.4    9.3e-28   95.9   0.4    1.6  1  DUF1899      Domain of unknown function (DUF1899)
    1.2e-15   57.6   6.8    0.00018   22.2   0.0    5.2  5  WD40         WD domain, G-beta repeat
    7.1e-05   23.0   0.1     0.0029   17.9   0.0    3.1  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    0.00017   20.4   0.1     0.0018   17.0   0.0    2.1  2  Nup160       Nucleoporin Nup120/160
     0.0004   19.5   0.0      0.028   13.4   0.0    2.4  2  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
    0.00045   20.0   1.0     0.0012   18.7   1.0    1.8  1  WD40_4       Type of WD40 repeat
  ------ inclusion threshold ------
      0.032   14.1   1.6        2.4    8.0   0.1    3.4  4  eIF2A        Eukaryotic translation initiation factor eIF2A
      0.039   14.0   0.4       0.13   12.4   0.4    1.8  1  DASH_Dad3    DASH complex subunit Dad3
      0.073   13.3   3.5      0.081   13.1   1.4    2.1  2  Fib_alpha    Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> DUF1899  Domain of unknown function (DUF1899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.4   4.7e-31   9.3e-28       1      66 []       6      72 ..       6      72 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 4.7e-31
     DUF1899  1 rfvrsSkfRhvfgkpakkeecydnirvsknawdsnlikaNpkflAvnwessGG.GafaVlplnktGk 66
                ++v++Sk+R+v+gk+akk+++y+ni+v++n+wdsnlik+N+kf+Avnw ssG  G+fa+l+++++Gk
  CCD24786.1  6 KIVQNSKYRYVYGKNAKKDLQYENIKVTTNPWDSNLIKCNEKFIAVNWFSSGSvGSFAILRIDQVGK 72
                589*************************************************9*************8 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       6.9   1.4e+04      15      29 ..      50      58 ..      43      60 .. 0.79
   2 !   19.8   0.3   5.1e-07     0.001       6      38 .]      79     113 ..      75     113 .. 0.89
   3 !   10.1   0.0    0.0006       1.2       9      38 .]     142     173 ..     135     173 .. 0.64
   4 !   22.2   0.0   9.2e-08   0.00018      10      38 .]     185     214 ..     178     214 .. 0.89
   5 ?    4.9   0.0     0.027        54       5      37 ..     222     260 ..     218     261 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 6.9
                EEEEETTSSEEEEEE CS
        WD40 15 slafspdgawlasGs 29
                ++      +w++sGs
  CCD24786.1 50 AV------NWFSSGS 58
                67......9999998 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 5.1e-07
                 EEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                  ++GH s + + +f+p +++ +as+sdD+++ iWd
  CCD24786.1  79 LFKGHkSQILDTDFDPFNTYrIASASDDCSIGIWD 113
                 589**666************99999*********9 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.0006
                 SS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 GH   v ++ ++p  +  las+s D +v+iW+
  CCD24786.1 142 GHaRKVGHILYHPTIPNiLASSSLDYSVKIWN 173
                 663336555444444442678899*******8 PP

  == domain 4  score: 22.2 bits;  conditional E-value: 9.2e-08
                 SSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 Hss.vtslafspdgawlasGsdDgtvriWd 38 
                 Hs+ vts++fs dga+la+ s+D+ +riWd
  CCD24786.1 185 HSDmVTSMSFSYDGAYLATISRDKMLRIWD 214
                 9778*************97699*******9 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.027
                 EEEESS.SS.EEEEEEETTSSEEE.EE.ET..TSEEEEE CS
        WD40   5 rtltGH.ss.vtslafspdgawla.sG.sd..DgtvriW 37 
                  + ++H ++ +  + +  d+++++ +G s+   + + +W
  CCD24786.1 222 SETRAHrGPkIQRVLWLGDSNYVVtTGfSKtcERQIGLW 260
                 5668998779************98355432336666666 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.5e-06    0.0029      35      89 ..     183     237 ..     164     240 .. 0.85
   2 ?    0.1   0.0      0.53   1.1e+03      54      80 ..     296     322 ..     288     337 .. 0.86
   3 ?   -0.3   0.0      0.69   1.4e+03      33      70 ..     542     581 ..     509     602 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.5e-06
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                    ++  v+s++++ dg  La    d  +r+ d+ + k++++ ++++  +++ + W
   CCD24786.1 183 LRHSDMVTSMSFSYDGAYLATISRDKMLRIWDIRENKIISETRAHRGPKIQRVLW 237
                  456778*****************************************99999999 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.53
  ANAPC4_WD40  54 avaysdgevrlldaesgkvvhslsvks 80 
                  +v+  d ++r ++ ++ ++++ ++++s
   CCD24786.1 296 VVGRGDANIRYYEFQNNELLQLSQYQS 322
                  78999*************999888776 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.69
  ANAPC4_WD40  33 eedkedsevrsLaWkpd..gklLavaysdgevrlldaesg 70 
                  ee++ ++  + L+W+ +  g  L + + ++++  +d++++
   CCD24786.1 542 EEPSIKQLSNTLKWNDNqiGVSLSINTPNTKIASIDIKKQ 581
                  3344444455788877644667777777888877777664 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.05        99     231     251 ..     158     178 ..     155     183 .. 0.91
   2 !   17.0   0.0   9.3e-07    0.0018     219     256 ..     186     224 ..     175     244 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.05
                 TEEEEEETT-EEEEEETTTTE CS
      Nup160 231 tylfalsrdgkLrvWnlltgk 251
                 ++l++ s+d+ +++Wn+ t+k
  CCD24786.1 158 NILASSSLDYSVKIWNIGTKK 178
                 789999***********9986 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 9.3e-07
                 EEEET......TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 219 ldvavavvei.gqtylfalsrdgkLrvWnlltgkclati 256
                 +d++++++ + + +yl+++srd+ Lr+W+++ +k+++  
  CCD24786.1 186 SDMVTSMSFSyDGAYLATISRDKMLRIWDIRENKIISET 224
                 4455555544699*********************99874 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.016        31      46      97 ..      63     116 ..      35     123 .. 0.76
   2 !   13.4   0.0   1.4e-05     0.028     178     248 ..     177     242 ..     158     256 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.016
    Ge1_WD40  46 glvrv..vnketeeraLlkglkgevldlafahvsskillavdekgslfvykvee 97 
                 +++r+  v k  ++ +L kg k+++ld  f   ++ ++++  +  s+ ++++ +
  CCD24786.1  63 AILRIdqVGKLPDQISLFKGHKSQILDTDFDPFNTYRIASASDDCSIGIWDIPK 116
                 5666633334557889**********************************9965 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 1.4e-05
    Ge1_WD40 178 eegllkieehsliveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhk 248
                 ++  + +++  ++++ +fs dG+ lat s d +++ + +     +e++ + e + h G ++  +l+l + +
  CCD24786.1 177 KKDEITLRHSDMVTSMSFSYDGAYLATISRDKMLRIWDI-----RENKIISETRAHRGPKIQRVLWLGDSN 242
                 556678888889************************988.....678899999999999999999988765 PP

>> WD40_4  Type of WD40 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.0   6.2e-07    0.0012       1      40 [.     356     394 ..     356     398 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 6.2e-07
      WD40_4   1 iepisftVPRkskeeFqdDlyPdtagtepaltAeeWlsGk 40 
                 i+p+sf VPR+  e Fq++      +++  ++A+eW+  k
  CCD24786.1 356 IVPVSFFVPRRV-EGFQKEKTSTSSKPQITMSASEWFGQK 394
                 89*********9.******98888888888*******866 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.061   1.2e+02      54     107 ..      42      99 ..      20     105 .. 0.76
   2 ?    8.0   0.1    0.0012       2.4     126     168 ..     168     211 ..     150     215 .. 0.84
   3 ?    0.5   0.0      0.24   4.9e+02     127     162 ..     210     248 ..     207     262 .. 0.73
   4 ?   -3.3   0.0       3.6   7.2e+03      72     100 ..     291     319 ..     286     321 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.061
                 CCEESSS.EEEEEE-TTSS..-EEEEE....SSSSCEEEEEECSCEEEEEEEEES--EEE CS
       eIF2A  54 velkkegpihdvaWspksk..efaviy....GkmpakvslfdlkvkviskleeqkrNtif 107
                 ++ +++   ++v+W ++++   fa++     Gk p ++slf+ + ++i +++ ++ Nt  
  CCD24786.1  42 IKCNEK--FIAVNWFSSGSvgSFAILRidqvGKLPDQISLFKGHKSQILDTDFDPFNTYR 99 
                 444444..788888766653478888555559*******************999999965 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0012
                 EEEEEETT.TTEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT-S CS
       eIF2A 126 eleiwdvk.kkkkiakaeaanatlvewspdgryvlTattaprlr 168
                 +++iw+   kk++i+  ++ + t++ +s+dg y++T +    lr
  CCD24786.1 168 SVKIWNIGtKKDEITLRHSDMVTSMSFSYDGAYLATISRDKMLR 211
                 789****9677788888888999*************98765555 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.24
                 EEEEETTTTEEEEEEE-TT--EEE...E-TTSSEEEEEE CS
       eIF2A 127 leiwdvkkkkkiakaeaanatlve...wspdgryvlTat 162
                 l iwd  + k i++++a    +++   w  d++yv+T  
  CCD24786.1 210 LRIWDIRENKIISETRAHRGPKIQrvlWLGDSNYVVTTG 248
                 578999999999988887654433333999999999964 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 3.6
                 S-EEEEESSSSCEEEEEECSCEEEEEEEE CS
       eIF2A  72 kefaviyGkmpakvslfdlkvkvisklee 100
                 ++++ + G  +a++  ++ + + + +l++
  CCD24786.1 291 TKILYVVGRGDANIRYYEFQNNELLQLSQ 319
                 56777888899999999998888877765 PP

>> DASH_Dad3  DASH complex subunit Dad3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   6.6e-05      0.13       7      49 ..     611     652 ..     607     654 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.6e-05
   DASH_Dad3   7 evLdeYerLaenlktLaselkeLasnsteeildgLReLErkig 49 
                 +vLd+ ++L +++ tL+++lk L++   ++ l  LR+LE+ki 
  CCD24786.1 611 SVLDNIASLGNHVTTLEDNLKYLQDM-DTSHLARLRSLEQKIQ 652
                 79*********************999.6677899*******96 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.83   1.6e+03      36     117 ..     528     559 ..     484     565 .. 0.58
   2 ?   13.1   1.4     4e-05     0.081      84     131 ..     611     657 ..     558     660 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.83
                 HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH CS
   Fib_alpha  36 dlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqk 117
                 +++k++ ++                                                  +  +++e +i++L n+l+ n+++
  CCD24786.1 528 KVAKITPQV--------------------------------------------------AATSTEEPSIKQLSNTLKWNDNQ 559
                 222222222..................................................22234445666666666666655 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 4e-05
                 HHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  84 keleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqkerk 131
                 + l+ +i+ l + +++ e n+++Lq++  s   ++  Leq+i+++e+k
  CCD24786.1 611 SVLD-NIASLGNHVTTLEDNLKYLQDMDTSHLARLRSLEQKIQILEEK 657
                 3456.9***************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 4704.09
//
Query:       CCD24787.1  [L=519]
Description: hypothetical protein NDAI_0D04740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.9e-133  443.4   2.4   5.9e-133  443.2   2.4    1.0  1  IMPDH          IMP dehydrogenase / GMP reductase domain
    1.8e-14   53.9   0.0    9.4e-07   29.2   0.0    2.5  2  CBS            CBS domain
    1.3e-07   30.9   2.6    3.3e-07   29.6   2.6    1.7  1  FMN_dh         FMN-dependent dehydrogenase
    3.3e-07   30.0   2.1     0.0016   17.9   1.1    2.4  2  NMO            Nitronate monooxygenase
     0.0014   18.2   1.0      0.013   15.0   1.0    2.3  1  His_biosynth   Histidine biosynthesis protein
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.024   14.7   0.0    1.5  1  YpsA           YspA SLOG family
      0.074   12.3   3.0        0.1   11.9   1.2    1.9  2  ThiG           Thiazole biosynthesis protein ThiG
        0.1   12.3   0.0       0.26   11.0   0.0    1.6  1  TFA2_Winged_2  TFA2 Winged helix domain 2


Domain annotation for each model (and alignments):
>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  443.2   2.4  2.6e-136  5.9e-133       1     343 [.      36     506 ..      36     508 .. 0.98

  Alignments for each domain:
  == domain 1  score: 443.2 bits;  conditional E-value: 2.6e-136
                 E--GGGEEEE---B-S-GGGSB--EESSTTEEESSSEEE-SSTTT-SHHHHHHHHHTTSEEEE-SSS-HHHHHHHHHHHHTS................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
       IMPDH   1 gltfddvllvpaksevlpkevdlktkltkkiklniPlvsaamdtvtesemAialareGgigvihknlsieeqaeevkkvkrs................. 82 
                 glt++d+l++p++  + +++v l+t+ltkki ln+P+vs++mdtvte++mAi++a  Ggig+ih+n+s +eqa++v+kvk++                 
  CCD24787.1  36 GLTYNDFLILPGYVGFGSTDVVLRTRLTKKIALNTPFVSSPMDTVTEADMAIHMALLGGIGIIHHNCSHDEQAAMVRKVKKYengfinspivvspqtti 134
                 79************************************************************************************************* PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       IMPDH  83 ................................................................................................... 82 
                                                                                                                    
  CCD24787.1 135 aearqmkqdygfsgfpvtengqfpgkllgivtsrdiqfvedatlpvseimtkdpvtslhgitlsegneilrkikkgkllivdeennlvsmlsradlmkn 233
                 *************************************************************************************************** PP

                 ...TTSXBX.TTSXB-EEEEE-SSTTHHHHHHHHHHTT-SEEEEE-STSSSHHHHHHHHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEEE-SS-S CS
                 ...xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       IMPDH  83 ...pnaakd.ekgrllvgaavgvkedalervkalveagvdvlvvdsahghsekvleavkeikkkveeveviaGnvataegakaLieagadavkvGiGpG 177
                    p a+k  ++++ll+ga++g+   +  r+++lveag+dv+v+ds++g+s  ++e++k+ik++++++eviaGnvat+e+a++Li+ag d++++G+G+G
  CCD24787.1 234 qnyPLASKSaTTKQLLCGASIGTLPTDRIRLTKLVEAGLDVVVIDSSQGNSLFQIEMLKWIKQTYPDLEVIAGNVATREQAANLIAAGCDGLRIGMGSG 332
                 ***88888647899************************************************************************************* PP

                 TTBHHHHHCSB---HHHHHHHHHHHHCTCT-EEEEES---SHHHHHHHHHTT-SEEEESCCCTTBTTSSSEEEEETTEEEEEEEETTSHHHHHH-..SS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xx RF
       IMPDH 178 siCttrvvagvGvpqltAvaevaeaakkagvpviaDGGikysgdivkAlaaGadavmlGsllagteEspgeviliegrkyKeyrGmgslgamkkg..sk 274
                 siC+t++v+++G+pq tAv++v+++a+++gvp++aDGG+ + g+ivkA+a+Ga++vm+G +lagt+Espge+++ +g+++K+yrGmgs++am+kg  s+
  CCD24787.1 333 SICITQEVMACGRPQGTAVYNVCQFANQFGVPCMADGGVANIGHIVKAIALGASTVMMGGMLAGTTESPGEYFFRDGKRLKSYRGMGSVDAMNKGaaSA 431
                 ********************************************************************************************8865588 PP

                 -TTS-...--SS-SBEEEEEE--B-HHHHHHHHHHHHHHHHHHHT-SSHHHHHH.....H-EEEEE-HHHHHHHS CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx RF
       IMPDH 275 dryfqk.keklvpeGvegrvpykgsvkevveqlvgglrsgmgylGaktieelke.....kakfvritaaglkesh 343
                 +ryf++ ++ +v++Gv g+v +kgs+k+++ +l++gl+++++++G++++++l+e     +++f+ +ta+++ e++
  CCD24787.1 432 SRYFSEdDKVFVAQGVAGSVVDKGSIKKFIPYLYNGLQHSCQDIGVTSVNALREevqsgNVRFEFRTASAQLEGG 506
                 9***953779********************************************899999999999999999985 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   4.2e-10   9.4e-07       8      51 ..     124     170 ..     111     174 .. 0.88
   2 !   22.2   0.0   6.6e-08   0.00015       1      53 [.     180     232 ..     180     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4.2e-10
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTT....BEEEEEEHHHH CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVVdedg....klvGivtlrDl 51 
                  +++v+p+tt++ea ++  ++g+s++PV+ e+g    kl+Givt rD+
  CCD24787.1 124 SPIVVSPQTTIAEARQMKQDYGFSGFPVT-ENGqfpgKLLGIVTSRDI 170
                 468************9977999*******.89966667*********9 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 6.6e-08
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHTS..SEEEEEETTTBEEEEEEHHHHHH CS
         CBS   1 Vgdimtrdvvtvppdttleealelmrekgv..srlPVVdedgklvGivtlrDllr 53 
                 V++imt+d+vt     tl+e  e++r+  +  + l++Vde+++lv ++++ Dl++
  CCD24787.1 180 VSEIMTKDPVTSLHGITLSEGNEILRK--IkkGKLLIVDEENNLVSMLSRADLMK 232
                 89***********************85..3227999*****************97 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   2.6   1.5e-10   3.3e-07     195     303 ..     278     394 ..     220     403 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 1.5e-10
                 CCCHB-TC--HHHHHHHHHHHS.SEEEEEEE-SHHHHHHHHHTTESEEEE--GGG......TSSTT---HHHCHHHHHHHH...SS-EEEESS--SHHH CS
      FMN_dh 195 vgkqldpsltwddikwlreqtk.lplvvKGvltaedakraveaGvdgivvSNHGG......RqldgapatidvLpeiveavgg.rievlvDgGirrGsD 285
                  ++q ++ ++ + +kw++++ + l+++   v t e a ++++aG+dg+ +    G        +    +   +  ++ + +++  ++ ++DgG+ +  +
  CCD24787.1 278 DSSQGNSLFQIEMLKWIKQTYPdLEVIAGNVATREQAANLIAAGCDGLRIGMGSGsicitqEVMACGRPQGTAVYNVCQFANQfGVPCMADGGVANIGH 376
                 4556677789999******98769***************************9999888886555555555566666666666545************** PP

                 HHHHHHTT-SEEEESHHH CS
      FMN_dh 286 vlkAlalGAdavllGRpf 303
                 ++kA+alGA+ v++G  +
  CCD24787.1 377 IVKAIALGASTVMMGGML 394
                 ***************865 PP

>> NMO  Nitronate monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00011      0.25       2      60 ..      60     117 ..      59     146 .. 0.88
   2 !   17.9   1.1   7.1e-07    0.0016     182     233 ..     349     402 ..     295     413 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
         NMO   2 slltellkikppvvqpgmggiskarLaaavsnaGgLGvlasgyltaDrlakeirkvkal 60 
                 ++lt+++  + p v ++m  +++a++a   +  Gg+G++     + D+ a+ +rkvk+ 
  CCD24787.1  60 TRLTKKIALNTPFVSSPMDTVTEADMAIHMALLGGIGIIH-HNCSHDEQAAMVRKVKKY 117
                 78999999*******************************9.88899**********975 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 7.1e-07
         NMO 182 faLvpqvldavd..iPviAaGGiidrrgvaaaLalGAsgvqigtrfLltkesda 233
                 +a+ +  + a +  +P +A GG+ +   +  a+alGAs v +g  + +t es+ 
  CCD24787.1 349 TAVYNVCQFANQfgVPCMADGGVANIGHIVKAIALGASTVMMGGMLAGTTESPG 402
                 44444444444466*************************************985 PP

>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.0   5.8e-06     0.013     165     223 ..     336     394 ..     262     398 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.8e-06
                   EEEETTTTTTSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTCSEEEESHHH CS
  His_biosynth 165 lltdidrdGtlsGpdleltkelaeavkipviasGGvgsledlkelksegvdavivgsal 223
                   + +++ + G  +G  +  + ++a+++ +p +a GGv+++ ++ ++ + g++ v++g +l
    CCD24787.1 336 ITQEVMACGRPQGTAVYNVCQFANQFGVPCMADGGVANIGHIVKAIALGASTVMMGGML 394
                   56678899999*****999*******************************999999776 PP

>> YpsA  YspA SLOG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   1.1e-05     0.024      31      71 ..     263     303 ..     261     307 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.1e-05
                 HHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EE CS
        YpsA  31 klkelleeglewviisgqlGvelwaaevvleLkeeypelkl 71 
                 +l++l+e gl+ v+i  ++G  l+ +e+++ +k++yp+l++
  CCD24787.1 263 RLTKLVEAGLDVVVIDSSQGNSLFQIEMLKWIKQTYPDLEV 303
                 6899*********************************9986 PP

>> ThiG  Thiazole biosynthesis protein ThiG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.36     8e+02     134     201 ..     261     325 ..     256     331 .. 0.69
   2 ?   11.9   1.2   4.5e-05       0.1     163     210 ..     350     397 ..     329     402 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.36
                 HHHHHHHHHTT-SEBEEBSSSTTS----S-HHHHHHHHHH-.SS-BEEES---SHHHHHHHHHTT-SEE CS
        ThiG 134 lvlarrleevGcaavmPlaapiGsglGllnkealkiiieea.kvPvivDAGigspsdaaqamelGadav 201
                  +   +l e+G  +v+  ++    g+ l + e+lk i ++  ++ vi    + + ++aa+ +  G+d++
  CCD24787.1 261 RIRLTKLVEAGLDVVVIDSS---QGNSLFQIEMLKWIKQTYpDLEVIA-GNVATREQAANLIAAGCDGL 325
                 55566777777777653333...2344677888888888887777663.45888899999999999985 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 4.5e-05
                 -HHHHHHHHHH-SS-BEEES---SHHHHHHHHHTT-SEEEESHHHHTS CS
        ThiG 163 nkealkiiieeakvPvivDAGigspsdaaqamelGadavllntavaea 210
                 + +++  + +++ vP + D G+ +  ++++a+ lGa++v++   +a +
  CCD24787.1 350 AVYNVCQFANQFGVPCMADGGVANIGHIVKAIALGASTVMMGGMLAGT 397
                 3577888899*******************************9888765 PP

>> TFA2_Winged_2  TFA2 Winged helix domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.26       7      28 ..      11      32 ..       6      35 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00011
  TFA2_Winged_2  7 lalLkkrpkaeGikvkdLkdsw 28
                   l++Lk++pk+ G++v +L+ds 
     CCD24787.1 11 LEHLKTYPKKDGLSVQELMDSN 32
                   79******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3694.96
//
Query:       CCD24788.1  [L=122]
Description: hypothetical protein NDAI_0D04750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0049   16.2   0.0     0.0054   16.0   0.0    1.1  1  Hepar_II_III_N  Heparinase II/III N-terminus
  ------ inclusion threshold ------
      0.091   11.8   0.5       0.93    8.4   0.5    1.9  1  DUF2333         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> Hepar_II_III_N  Heparinase II/III N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.1e-07    0.0054     183     255 ..       9      82 ..       2     119 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6.1e-07
                     HHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHHHHH-TTBTTHHH.HHHHHHHHHHHHHHHCB-TTS-BTT- CS
  Hepar_II_III_N 183 stflvsyaehaeyllknYseegNillfeaqalvtaGvlfPEfkeaek.WresgisilneeikkqvleDGvqyel 255
                     +++l+ +++ a+ ++++ + +    + ea++  +a ++ PEfk+ +   ++++  +l+++ ++ ++e G + e+
      CCD24788.1   9 LEYLKDVNSAADRIRHHLAMSHQQEVEEANRAQAATTVVPEFKRVPLpTMNTAPPMLEKNCTSSFYESGSTLEM 82 
                     689*************9999999*********************9862578999***************99997 PP

>> DUF2333  Uncharacterized protein conserved in bacteria (DUF2333)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.5    0.0001      0.93     167     212 ..      67     113 ..       1     121 [. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0001
     DUF2333 167 kekdaqFyaradnLneyleevekRLgslsqrL.sasvgkaklntdla 212
                 k+  ++Fy     L+ + e+ve++L ++ q + s+  g a+lnt  a
  CCD24788.1  67 KNCTSSFYESGSTLEMWEESVEQKLQNIDQDIkSNKFGAADLNTMFA 113
                 456789**********************9998355677778877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1013  (0.0565006); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 934.03
//
Query:       CCD24789.1  [L=78]
Description: hypothetical protein NDAI_0D04760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 557.87
//
Query:       CCD24790.1  [L=196]
Description: hypothetical protein NDAI_0D04770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-19   69.4   0.0    4.2e-19   69.2   0.0    1.2  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   2.4e-23   4.2e-19      21     125 ..      71     184 ..      42     191 .. 0.75

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 2.4e-23
                 -TTSSEEEEEEEETTSCCTCT.T...EEEEEEEEEETTSSEE-TTCEE-B-TTSS.CCCCS---B--STTS..EEEEEEEE....EESSSG......-- CS
         PBP  21 pegtksyalvviDpDapkvse.t...flHwvvtnipasvtslpegavqgknslge.esesgYlgpcPpkgdgkHrYvflly....aldvea......ld 104
                 + + + +++v++DpDap++++ t   ++H+v t+i  s++      ++g    g+ +  s+Y+gp+Pp+++gkHrYvflly                + 
  CCD24790.1  71 DLEHDRFTFVMTDPDAPSRTDkTyseYCHYVETDIDLSKAD-----AEGWRPIGNgKVVSSYIGPGPPPKTGKHRYVFLLYkqprD----LtkftevKG 160
                 446899**********9888875789*********944444.....33334444433447*********************66441....233555544 PP

                 .BGSS-SHHHHHHH.HC.TTEEEE CS
         PBP 105 .lkagftraelgaa.ia.ghvlak 125
                   ++g+  + +ga+ +a +++l+ 
  CCD24790.1 161 qFNWGYGIPGVGANkWAsENKLDL 184
                 499999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1547.22
//
Query:       CCD24791.1  [L=1609]
Description: hypothetical protein NDAI_0D04780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.9e-26   89.6   0.2      2e-12   47.0   0.0    6.4  6  cNMP_binding  Cyclic nucleotide-binding domain
      3e-17   63.5   3.9    5.6e-16   59.3   2.6    3.0  2  Patatin       Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0051        46       3      44 ..     202     241 ..     200     262 .. 0.79
   2 ?   -2.9   0.0      0.83   7.4e+03      25      49 ..     290     312 ..     290     331 .. 0.76
   3 !    4.7   0.0    0.0036        32      66      89 .]     403     426 ..     390     426 .. 0.87
   4 !   23.0   0.0   6.7e-09     6e-05       2      89 .]     762     859 ..     761     859 .. 0.84
   5 !   47.0   0.0   2.3e-16     2e-12       2      89 .]     888     999 ..     887     999 .. 0.84
   6 ?   -0.5   0.0      0.15   1.3e+03      60      82 ..    1136    1158 ..    1100    1162 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0051
                   EE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS.EEEEEE CS
  cNMP_binding   3 sfkagevifrqGdpadslyivlsGevrvyrlsedgkevvlav 44 
                   ++  ge+++  +    ++ iv++G+++v++  e+ +  +++ 
    CCD24791.1 202 KLDEGEILLLDNSI--GFAIVVEGTLQVFHEVEQTADEIVRN 241
                   67789999999999..5***********99888887777765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.83
                   ES-EEEEEEETTS.EEEEEEE-TTE CS
  cNMP_binding  25 sGevrvyrlsedgkevvlavlgpGd 49 
                   sG +r+  +++ gk ++l++++pG+
    CCD24791.1 290 SGYIRL--KNGLGKFQLLNTVKPGN 312
                   678888..89999**********95 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0036
                   EEESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding  66 vvAltdsellalprddflellqqd 89 
                   ++A td++++ +p ++f +l +++
    CCD24791.1 403 ARASTDCTIAIIPPQAFARLTAKY 426
                   89****************998775 PP

  == domain 4  score: 23.0 bits;  conditional E-value: 6.7e-09
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEEEEETTS...........EEEEEEE-TTEEESHHHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHHH CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvyrlsedg..........kevvlavlgpGdlfGelalltgeprtatvvAltdsellalprddflellqq 88 
                   + fk+g+ i++++  ++++++v+sG+++v+++s+++           e++l  +g+G + G l+ + g ++  ++ A+td+ + +lp + +++l+++
    CCD24791.1 762 KFFKQGSNIVEANSDGKGMFYVISGKISVSTSSDSDdhptnkknhkIEHTLFSIGSGGIAGYLSGIVGYKSFVNLKAQTDVYVGFLPNKVIERLCDK 858
                   579**************************8333333455555443355677788************8899*************************98 PP

                   - CS
  cNMP_binding  89 d 89 
                   +
    CCD24791.1 859 Y 859
                   6 PP

  == domain 5  score: 47.0 bits;  conditional E-value: 2.3e-16
                   EEE-TT-EEE-TTSB-SEEEEEEES-EEEE.......................EEETTS.EE........EEEEE-TTEEESHHHHHHTS--SSEEE CS
  cNMP_binding   2 rsfkagevifrqGdpadslyivlsGevrvy.......................rlsedgkev........vlavlgpGdlfGelalltgeprtatvv 67 
                   ++++a e++f q+dpa+++y+vl G++r                         +       +        v+++l +G+ fGe+++lt  +r +t+v
    CCD24791.1 888 VHLSASETLFSQDDPANGIYVVLNGRLRQLqerkrnttndvneaithhdskkdK-------MknsttypvVVGELAQGESFGEVEVLTAMNRFTTIV 977
                   68999************************9899988888888887665543321.......02233444488899********************** PP

                   ESSTEEEEEEEHHHHHHHHHH- CS
  cNMP_binding  68 Altdsellalprddflellqqd 89 
                   A+ dsel+++pr  f+++ +++
    CCD24791.1 978 AVRDSELARIPRTLFESIAMEH 999
                   ****************999876 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 0.15
                    S--SSEEEESSTEEEEEEEHHHH CS
  cNMP_binding   60 eprtatvvAltdsellalprddf 82  
                    +++t t++A++d+ ll  ++ ++
    CCD24791.1 1136 SSWTQTCIAQGDCILLLADATSL 1158
                    568899********998877665 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.42   3.8e+03      86     120 ..     157     200 ..     134     293 .. 0.59
   2 !   59.3   2.6   6.3e-20   5.6e-16       1     202 [.    1303    1465 ..    1303    1467 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.42
     Patatin  86 llgkgglfdaealrellr.........kvladktlkrlsarlgk 120
                  ++ +++ d+++l+++l+         ++l++  ++ l+++ ++
  CCD24791.1 157 NRNSNNINDDTFLSSYLDqflsaikifGYLEKPVFHALTKNMKT 200
                 56677788888888888844445522222433333333333333 PP

  == domain 2  score: 59.3 bits;  conditional E-value: 6.3e-20
     Patatin    1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaea 97  
                  Lvl+GGG+rg+++lg+++a+ +e g+ +d+i+GtS+G++++ l+a  +d   ++  +  +  + +  +             +l+ ++  +++ +++ 
  CCD24791.1 1303 LVLGGGGARGLSHLGVIQAI-EEQGIPIDMIGGTSIGSFVGGLYAKDYDLVPIYGRVKKFAGRISSLWR-----------TLLDLTWPVTSYTTGHE 1387
                  8*******************.*************************99999966666666666666666...........99*************** PP

     Patatin   98 lrellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglfppvsldgelyvDGGi 194 
                  + + + k+++d  ++++ ++  +                             ++   + ++    +  ++ +raS+++ gl+pp +  g  ++DGG 
  CCD24791.1 1388 FNRGIWKTFGDTRIEDFWIQYYCN---------------------------STNITNSVQEIHSFGYAWRYIRASMSLAGLLPPLEEHGSMLLDGGY 1457
                  *********************999...........................455555666666677899**************************** PP

     Patatin  195 lsNvPila 202 
                  l+N+P+l+
  CCD24791.1 1458 LDNLPVLE 1465
                  *****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1094  (0.0610185); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.45
# Mc/sec: 10781.77
//
Query:       CCD24792.1  [L=376]
Description: hypothetical protein NDAI_0D04790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-20   72.9   0.3    4.6e-20   71.9   0.3    1.5  1  OGG_N     8-oxoguanine DNA glycosylase, N-terminal domain
    2.6e-20   72.9   0.0    4.3e-20   72.2   0.0    1.3  1  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
  ------ inclusion threshold ------
      0.069   13.1   1.5         11    6.1   0.0    2.8  3  Elf4      Early Flowering 4 domain


Domain annotation for each model (and alignments):
>> OGG_N  8-oxoguanine DNA glycosylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.3   7.7e-24   4.6e-20       2     121 .]       7     124 ..       6     124 .. 0.87

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 7.7e-24
                 EEES-SS--HHHHHCSSS-SSEEE-TTS-.EEEEETT......EEEEEEEETTEEEEET--.............HHHHHHTHHHHTTTTS-HHHHH.HH CS
       OGG_N   2 llvskeeldlkktLkcGQsFrWkktekte.yvgvlgd......rvveLkqeeddllyrtlesesstkasseeakeeeteeilrdYfnLdvdleely.ke 92 
                 ++v+k el+l+++L++GQ+FrW  +ek++ y+++++        +v+L+q  ddl+  t          + + + e  +++l++Yf+Ldv+l++l  +e
  CCD24792.1   7 IKVNKDELSLTNVLQAGQAFRWVFNEKENhYTTTMKVtesnkyFIVVLSQPADDLIEFTSP--------DLSLDPEHLRSHLERYFRLDVSLNNLLlNE 97 
                 7899******************977555448888865677877899999888888766655........789**********************999** PP

                 HTT.SHHHHHHHCCTTT-------HHHHH CS
       OGG_N  93 wskkdplfkksadkftGiRllrqdpwEcL 121
                 w  kd +fk       G+R+l q+pwE+L
  CCD24792.1  98 WIPKDHRFKTISA--HGVRILAQEPWETL 124
                 *********9995..9***********98 PP

>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.2   0.0   7.3e-24   4.3e-20       1     101 [.     125     283 ..     125     287 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.2 bits;  conditional E-value: 7.3e-24
                 HHHHHHTTS-HHHHHHHHHHHHHHHS.............HCSHHHHHHSH.HHHHHHHHTTSTTHHHHHHHHHHHHHHHH................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx................... RF
     HhH-GPD   1 vsailsqqtsderanriierlferfg.............fptpedladad.eekLrelirelGfyrrKakyikelArilv................... 66 
                 +s+i+s++++++r+++++ +l+ ++g             fp+ + +a+ + e+ Lr+l    Gf+ ++akyi+e+A+++                    
  CCD24792.1 125 ISFICSSNNNIARITKMCHSLCTNYGeevgvfdgqkffsFPSSDVIAERAtETALRDL----GFG-YRAKYIIETAKKVSkvradgnyendtalfrklq 218
                 79**********************************************999*******....***.********************************* PP

                 ...............................S-SSS--TTSHHHHHHHHHHTTSSSSTTHHHHHHH CS
                 ...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
     HhH-GPD  67 ...............................gkpdvlivvDvhvrrilkrlrsikekktkkkvekk 101
                                                g +d +++vDvhv+ri+kr ++i ++++   + kk
  CCD24792.1 219 ssfsyiemrehlmgytgvgpkvadcvclmglG-MDDVVPVDVHVSRIAKRDYQIIANNKNISTLKK 283
                 ******************************87.5668899**************999776666555 PP

>> Elf4  Early Flowering 4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0018        11      48      74 ..     126     152 ..     122     157 .. 0.86
   2 ?   -3.4   0.0       1.6   9.6e+03       3      15 ..     210     222 ..     205     226 .. 0.61
   3 ?    5.1   0.1    0.0036        21      54      69 ..     275     290 ..     260     298 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0018
        Elf4  48 aLirelNgNIskvvslYsdLslsfsks 74 
                 + i   N+NI+++ ++   L++++ + 
  CCD24792.1 126 SFICSSNNNIARITKMCHSLCTNYGEE 152
                 667778****************99765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.6
        Elf4   3 dakvlqtlsksfr 15 
                 d+ ++ +l++sf+
  CCD24792.1 210 DTALFRKLQSSFS 222
                 5555566666665 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0036
        Elf4  54 NgNIskvvslYsdLsl 69 
                 N+NIs   +lY+dL +
  CCD24792.1 275 NKNISTLKKLYADLPI 290
                 9************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2843.49
//
Query:       CCD24793.1  [L=854]
Description: hypothetical protein NDAI_0D04800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-74  251.8   1.2    5.4e-57  193.6   0.2    2.2  2  PIF1             PIF1-like helicase
    9.7e-19   67.8   0.0    1.5e-18   67.2   0.0    1.3  1  AAA_30           AAA domain
    1.7e-09   38.2   0.0    3.6e-09   37.1   0.0    1.6  1  AAA_19           AAA domain
    0.00078   19.7   0.1      0.006   16.9   0.0    2.4  2  AAA_22           AAA domain
     0.0046   15.0   0.1      0.036   12.0   0.0    2.0  2  Herpes_Helicase  Helicase
     0.0058   16.2   0.0      0.012   15.1   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
     0.0071   16.2   0.0      0.017   14.9   0.0    1.7  1  UvrD_C_2         UvrD-like helicase C-terminal domain
  ------ inclusion threshold ------
      0.034   14.0   0.0      0.097   12.5   0.0    1.7  1  SH3_13           ATP-dependent RecD-like DNA helicase SH3 dom
      0.069   13.0   0.3       0.33   10.8   0.3    2.1  1  Helicase_RecD    Helicase
      0.087   12.2   0.0       0.18   11.2   0.0    1.4  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.093   11.6   0.0       0.15   10.9   0.0    1.2  1  TrwB_AAD_bind    Type IV secretion-system coupling protein DN
       0.11   11.7   0.0          1    8.5   0.0    2.2  2  DUF2075          Uncharacterized conserved protein (DUF2075)
       0.13   12.2   0.0       0.29   11.0   0.0    1.6  1  NACHT            NACHT domain


Domain annotation for each model (and alignments):
>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.6   0.2   3.9e-60   5.4e-57       2     225 ..     277     483 ..     276     492 .. 0.95
   2 !   57.2   0.1   1.1e-18   1.6e-15     268     363 ..     499     581 ..     484     582 .. 0.93

  Alignments for each domain:
  == domain 1  score: 193.6 bits;  conditional E-value: 3.9e-60
                 --HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHC..TCCCEEEEESSHHHHHCC.TSEECHHHHT-TTSSS-HHHH..HHHTSCCC CS
        PIF1   2 LneeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrs..egkivlavAssGvAalllegGrtahsrfkiplekdeestc..kikrgskl 96 
                 L++eQ++++  +      ekg ++F+tGs+GtgK++l+++++ +lr     + v+++As+G+Aa+++ gG+t+hs+++i+l++ e+  +  k++r++k+
  CCD24793.1 277 LSTEQENIITLA------EKGINIFYTGSAGTGKSILLREMIRALRRkyDADEVAVTASTGLAACNI-GGITVHSFAGIGLGNGEAVNLykKVRRSKKH 368
                 788888888877......9**************************98556789**************.******************999999******* PP

                 HHHHHC-SEEEEECGGGSBHHHHHHHHHHHHHHCT-...-SCCCC-EEEEE--TTS-----SSSSS---BGC...CSCHHHH.--.EEEE-S-STTTT. CS
        PIF1  97 aellkktsliiwDEapmverecfealdrtlrdilkekeidkpFGGktvvlgGDfrQilPviekgsraeivaasikeSklWke.vk.vlkLtknmRllse 193
                  ++++k++++++DE++m++ +++++ld ++++i+k+   + pFGG++++++GDf+Q++Pv+++++ ++ +a+   eSk+Wk  +k +++L+k++R++ +
  CCD24793.1 369 LRRWQKIKALVVDEISMIDGKLLDKLDYIAQKIRKN---HAPFGGIQLIFCGDFFQLPPVSKDPQNPTVFAF---ESKAWKAgIKsTIMLQKVFRQQGD 461
                 ***********************************9...88*******************************...*******9999************8 PP

                 ..........HHHHHHHHHHHCT---CCCCHH CS
        PIF1 194 sldetekkelkeFskwllkigdGkineedeee 225
                           +eF+ +l++++ Gki+e++e+e
  CCD24793.1 462 ----------AEFITMLNQMRLGKIDENTERE 483
                 ..........8****************99987 PP

  == domain 2  score: 57.2 bits;  conditional E-value: 1.1e-18
                 EEEESSCCHHHHHHHHHHCCSSS--EEEE-EEE...........ESBSSCHHCHHHCCTTSS-SCEEE-TT-EEEE-S--CTT-SC-TCEEEEEEE CS
        PIF1 268 ailcptnedvdeiNnyvlsklpgeekeylssDsisksseeieeldalypteflnslkanglpnhvLkLkvGvpvmllrNldqsaGLcNGtrlivtq 363
                 a+l++t+ +vd++N ++l+klpg  ++++s+D              l ++e++++l +n+l++++L+LkvG++vm+++N+d++  L+NG+ +++  
  CCD24793.1 499 AELYSTRAEVDRANFSRLNKLPGLTHTFESIDG-----------GELQDQEMKERLLQNFLAPKTLQLKVGAQVMMIKNMDET--LVNGSLGKILA 581
                 89*******************************...........568899*********************************..*****999865 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   1.1e-21   1.5e-18       2     178 ..     277     480 ..     276     489 .. 0.77

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 1.1e-21
      AAA_30   2 lnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa..ggrviglAptgkaAkvLa.......eelgi...eastiakllkrlk.grarle 87 
                 l++eQ+++++ l+++g    + tG AGtGK+ +l+++ +a++++    +v++ A+tg aA +++       +++g+   ea ++ k ++r k +  r++
  CCD24793.1 277 LSTEQENIIT-LAEKG-INIFYTGSAGTGKSILLREMIRALRRKydADEVAVTASTGLAACNIGgitvhsfAGIGLgngEAVNLYKKVRRSKkHLRRWQ 373
                 8899999995.44444.57899***************88888775559****************66655443555465688898888888886555666 PP

      AAA_30  88 pgtllivDEagmvdtkqlaallkaaeka........gakvilvGDerQlasVeaGgvlrdlvea......agi.gtaeLtevvRqke.seeraaalalr 170
                 + + l+vDE++m+d k l++l  +a+k         g+++i++GD  Ql++V++  +  ++++       agi  t+ L++v+Rq+  +e+ ++ +++r
  CCD24793.1 374 KIKALVVDEISMIDGKLLDKLDYIAQKIrknhapfgGIQLIFCGDFFQLPPVSKDPQNPTVFAFeskawkAGIkSTIMLQKVFRQQGdAEFITMLNQMR 472
                 66************99888886666663355899988***************9865444443223344545555899********7659********** PP

      AAA_30 171 egdaeeal 178
                  g+++e+ 
  CCD24793.1 473 LGKIDENT 480
                 **998543 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   2.6e-12   3.6e-09       1     144 [.     281     425 ..     281     427 .. 0.74

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 2.6e-12
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelle....ea 94 
                 q+++++ a k  +++ t+ +GtGK+ +l+++++ l +  +  ++e+++ a tg Aa ++            T+H++a +++ + +  a++l +    ++
  CCD24793.1 281 QENIITlAEKGINIFYTGSAGTGKSILLREMIRALRRKYD--ADEVAVTASTGLAACNIGGI---------TVHSFAGIGLGNGE--AVNLYKkvrrSK 366
                 6777876777778899********************9995..59**************9955.........58888776666666..455544443332 PP

      AAA_19  95 eeekklqeeellivDEfqdvd.elqyrLlkallgekkk.........lllvGDpdQliyv 144
                 ++ +  q+ ++l+vDE++++d +l  +L + ++++  k         l++ GD  Ql++v
  CCD24793.1 367 KHLRRWQKIKALVVDEISMIDgKLLDKL-DYIAQKIRKnhapfggiqLIFCGDFFQLPPV 425
                 33334444559**********6666655.555533322357899999**********987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   4.4e-06     0.006      10     129 ..     296     417 ..     289     419 .. 0.68
   2 ?   -1.6   0.0       2.2     3e+03      71     113 ..     532     580 ..     484     591 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4.4e-06
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav...ielliiDEaqhlrs 105
                  tG +GtGK+ llr++ + l + ++a+  ++ v   t  + ++   +  + +  +gl++    ++   l++++++  ++ ++   i++l++DE+  +  
  CCD24793.1 296 YTGSAGTGKSILLREMIRALRRKYDAD--EVAVTASTGLAACNIGGITVHSFAGIGLGN----GEAVNLYKKVRRSKKHLRRwqkIKALVVDEISMI-D 387
                 58*****************95543322..222223333344477777666666666544....4588888888888888888888************.7 PP

      AAA_22 106 eealeeLrsllnl......srkgvqliLvG 129
                  ++l +L  ++           g+qli++G
  CCD24793.1 388 GKLLDKLDYIAQKirknhaPFGGIQLIFCG 417
                 777777744433334435777788888877 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.2
      AAA_22  71 erlsseellealeqalrarav......ielliiDEaqh.lrseealeeLr 113
                  +l+ +e+ e+l q++ a ++       ++++i +++  l  +  l ++ 
  CCD24793.1 532 GELQDQEMKERLLQNFLAPKTlqlkvgAQVMMIKNMDEtL-VNGSLGKIL 580
                 3788899999999999988888888899999999998877.555555554 PP

>> Herpes_Helicase  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1     0.082   1.1e+02      64      98 ..     296     337 ..     274     346 .. 0.79
   2 !   12.0   0.0   2.6e-05     0.036     733     776 ..     735     776 ..     713     795 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.082
  Herpes_Helicase  64 itGtAGaGks....tsiqalaenld...ClitgatvvAaqnl 98 
                       tG+AG+Gks      i al ++ d     +t++t +Aa n+
       CCD24793.1 296 YTGSAGTGKSillrEMIRALRRKYDadeVAVTASTGLAACNI 337
                      59*******9444446778877766333589********998 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.6e-05
  Herpes_Helicase 733 amtiaksqGlslekvAicFgnhknlklssvYvalsRatdseflv 776
                      ++ i k+qG  l kv ++        + + YvalsRa++ e l 
       CCD24793.1 735 SLSIHKAQGQTLPKVKVDLRRV--FEKGQAYVALSRAVSREGLQ 776
                      789***************9765..99************998775 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.7e-06     0.012      28      73 ..     286     330 ..     266     335 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.7e-06
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqt 73 
                 +l +++ +++++G++GtGK++++++++++l  +ky    + ++a+t
  CCD24793.1 286 TLAEKGINIFYTGSAGTGKSILLREMIRALR-RKYDADEVAVTAST 330
                 678999************************9.99998888888776 PP

>> UvrD_C_2  UvrD-like helicase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.3e-05     0.017       2      45 ..     733     769 ..     732     772 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.3e-05
    UvrD_C_2   2 ayaltihkaQGsefpaVivfdpdlaaarmgelrrrlLYtavTRA 45 
                 a+ l+ihkaQG+  p V v  +    ++     +  +Y+a++RA
  CCD24793.1 733 AWSLSIHKAQGQTLPKVKV--DLRRVFE-----KGQAYVALSRA 769
                 899****************..3333333.....6679******9 PP

>> SH3_13  ATP-dependent RecD-like DNA helicase SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0     7e-05     0.097      25      54 ..     554     582 ..     534     593 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 7e-05
      SH3_13  25 vfrvgDkVmqlkNnydkgvfNGDiGiikei 54 
                 +++vg +Vm++kN  +  + NG +G+i ++
  CCD24793.1 554 QLKVGAQVMMIKNMDE-TLVNGSLGKILAF 582
                 4899*********977.899*******987 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00024      0.33       3     110 ..     297     394 ..     295     403 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00024
  Helicase_RecD   3 tAdRGRGKSaalGlalaaliaegk.snilvtapskenvktlfeflakglealglkeeekkkkaekaelrvrkqrieyiapdellklkeqadllvvD 97 
                    t++ G+GKS +l  ++ al ++ +  ++ vta +  ++ ++     +++  +gl + e  +  +         +++  + ++ l++ ++ ++lvvD
     CCD24793.1 297 TGSAGTGKSILLREMIRALRRKYDaDEVAVTASTGLAACNIGGITVHSFAGIGLGNGEAVNLYK---------KVR--RSKKHLRRWQKIKALVVD 381
                    6788**********9999999877799********99999999999999888876433222222.........222..222333333456789*** PP

  Helicase_RecD  98 EAAaiplpllkkl 110
                    E ++i+ +ll+kl
     CCD24793.1 382 EISMIDGKLLDKL 394
                    *********9987 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013      0.18      33      73 ..     286     325 ..     256     328 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
                   EEGGGS-.SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEE CS
  FtsK_SpoIIIE  33 ldlkkmashllvaGatgsGKStalntLilSlatthtPeeVq 73 
                   + + k   ++   G+ g+GKS  l+ +i +l  +++++eV+
    CCD24793.1 286 TLAEKG-INIFYTGSAGTGKSILLREMIRALRRKYDADEVA 325
                   333333.489999**************************97 PP

>> TrwB_AAD_bind  Type IV secretion-system coupling protein DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00011      0.15      17      44 ..     293     320 ..     283     333 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
  TrwB_AAD_bind  17 hilivGttGsGKtqalekllrairargd 44 
                     i+ +G++G+GK+  l++++ra+r++ d
     CCD24793.1 293 NIFYTGSAGTGKSILLREMIRALRRKYD 320
                    57899*******************9875 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00073         1       4      34 ..     294     325 ..     292     406 .. 0.72
   2 ?    0.3   0.0      0.23   3.2e+02     152     191 ..     440     479 ..     417     493 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00073
     DUF2075   4 vlVtGvaGtGKtvvllnllael.eddeeerta 34 
                 ++ tG aGtGK+++l +++ +l ++ + ++ a
  CCD24793.1 294 IFYTGSAGTGKSILLREMIRALrRKYDADEVA 325
                 6789**************99995333333333 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.23
     DUF2075 152 kkleveleekvhLksqfRvaaseaviewvdalldgkkeka 191
                 k +++ +++++ L++ fR++++++ i  ++++  gk +++
  CCD24793.1 440 KAWKAGIKSTIMLQKVFRQQGDAEFITMLNQMRLGKIDEN 479
                 678888889999***************9999876655554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.29       4      30 ..     295     321 ..     293     328 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
                 EEEC-TTTCHHHHHHHHHHHHCTS-SC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklp 30 
                 + +G aG GK++Ll+++++a++++++ 
  CCD24793.1 295 FYTGSAGTGKSILLREMIRALRRKYDA 321
                 568******************998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.72u 0.37s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 5600.23
//
Query:       CCD24794.1  [L=626]
Description: hypothetical protein NDAI_0D04810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-32  109.6   1.6    5.5e-15   54.9   0.0    3.8  3  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    3.4e-08   33.4   0.0     0.0006   19.8   0.0    2.7  2  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
     0.0016   18.2   0.0        2.1    8.3   0.0    3.0  3  RRM_occluded  Occluded RNA-recognition motif
     0.0063   16.5   0.2        3.6    7.7   0.2    2.9  2  RRM_3         RNA binding motif
  ------ inclusion threshold ------
      0.047   13.8   0.1        2.5    8.3   0.0    3.4  3  RRM_7         RNA recognition motif
          4    7.6   9.0         18    5.5   0.2    3.9  4  PHM7_cyt      Cytosolic domain of 10TM putative phosphate tra


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   8.4e-17   2.5e-13       1      70 []      60     131 ..      60     131 .. 0.94
   2 ?    1.9   0.1     0.067     2e+02      10      42 ..     149     181 ..     146     210 .. 0.83
   3 !   54.9   0.0   1.8e-18   5.5e-15       1      70 []     279     345 ..     279     345 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.6 bits;  conditional E-value: 8.4e-17
                 EEEESETTTSSHHHH....HHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeL....kelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +fV  L++++t++eL     ++F+kfG+i+++k+ rd  + ++++afV++++  dA++Al++ +g  l+gr+l+
  CCD24794.1  60 VFVASLTSTLTDDELcvsvTDYFKKFGEIVRVKVLRD--QANRPYAFVQYTNDKDANNALKTAHGSLLNGRRLR 131
                 7999*********9866667****************9..********************************986 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.067
                 SSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEE CS
       RRM_1  10 vteeeLkelFskfGpiksiklvrdetgkskgfa 42 
                 +++ e++ + +kfG+   +   rd t+ +++f 
  CCD24794.1 149 ISKMEIESICNKFGELDQLVPKRDDTQFTRRFS 181
                 678899999999999999888888888888875 PP

  == domain 3  score: 54.9 bits;  conditional E-value: 1.8e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +fVg Lp+++t+e+L+++F k G+i +++l+++   +++ faf+++es+ +A++Ale+ n+  + +++++
  CCD24794.1 279 IFVGQLPQETTKEDLETHFWKHGKILDLNLIHK---PTNVFAFIQYESEKSAAAALETENHSIFISKTIH 345
                 8*******************************7...*************************999988885 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     2e-07    0.0006      17      53 .]      78     117 ..      71     117 .. 0.91
   2 !   10.8   0.0   0.00013      0.39      18      53 .]     293     331 ..     283     331 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2e-07
  Nup35_RRM_2  17 VlehFasfGeIvkhyvp...kevsvmyvkfesekdaekAL 53 
                  V ++F+ fGeIv+  v     ++++++v++ + kda+ AL
   CCD24794.1  78 VTDYFKKFGEIVRVKVLrdqANRPYAFVQYTNDKDANNAL 117
                  889**********999889988****************98 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00013
  Nup35_RRM_2  18 le.hFasfGeIvkhyvp..kevsvmyvkfesekdaekAL 53 
                  le hF   G+I + +    +   ++++++esek+a+ AL
   CCD24794.1 293 LEtHFWKHGKILDLNLIhkPTNVFAFIQYESEKSAAAAL 331
                  44599999***99777665667789************98 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0032       9.6      12      70 ..      68     132 ..      58     136 .. 0.76
   2 ?   -1.7   0.0       0.9   2.7e+03      13      33 ..     149     168 ..     146     172 .. 0.86
   3 !    8.3   0.0   0.00069       2.1       3      70 ..     278     346 ..     276     349 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0032
  RRM_occluded  12 tvnkariralveek..e.geikkivLvpdheG...AivefkdekiagkasLaLdgsefegkklrc 70 
                   t +++++   v+++  + gei+++ +  d+     A+v++++ k+a  a+   +gs ++g++lrc
    CCD24794.1  68 TLTDDELCVSVTDYfkKfGEIVRVKVLRDQANrpyAFVQYTNDKDANNALKTAHGSLLNGRRLRC 132
                   56666666666666542488888887766654444*****************************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.9
  RRM_occluded  13 vnkariralveekegeikkiv 33 
                   ++k +i++++++  ge++++v
    CCD24794.1 149 ISKMEIESICNKF-GELDQLV 168
                   8999********9.9998765 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00069
  RRM_occluded   3 tisllplsDtvnkariralveekegeikkivL..vpdheGAivefkdekiagkasLaLdgsef.egkklrc 70 
                   +i + +l+   +k+ +++++ ++ g+i ++ L   p +  A++++++ek+a+  +L+ +++++   k++++
    CCD24794.1 278 SIFVGQLPQETTKEDLETHFWKH-GKILDLNLihKPTNVFAFIQYESEKSAAA-ALETENHSIfISKTIHV 346
                   667778999999***********.***9987733699999**********995.56666666425888876 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0058        17      17      58 ..      77     121 ..      59     135 .. 0.84
   2 !    7.7   0.2    0.0012       3.6       9      85 ..     284     362 ..     279     364 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0058
                 HHHHHCHCCS-ECEEEE-TTSSE...EEEEESSHHHHHHHHHHHH CS
       RRM_3  17 dikellsklgevayvdyekgdke...gevrFkedeeakkalekat 58 
                 ++ + ++k+ge+  v + +++++   + v++ +d++a++al+ a 
  CCD24794.1  77 SVTDYFKKFGEIVRVKVLRDQANrpyAFVQYTNDKDANNALKTAH 121
                 68899************99998756689***********999875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0012
                 -SSS--HHHHHHHCHCCS-ECEEE..E-TTSSEEEEEESSHHHHHHHHHHHHHC-B-CCTSSEEEEE--HHHHHHHHHH CS
       RRM_3   9 lnkelsredikellsklgevayvd..yekgdkegevrFkedeeakkalekateaklkikdaevtlelLeGeeEkeywkk 85 
                 l +e+++ed+ + + k+g++   +  ++ ++  + ++++++++a +ale   ++  + k  +v+++ + G + k+ +kk
  CCD24794.1 284 LPQETTKEDLETHFWKHGKILDLNliHKPTNVFAFIQYESEKSAAAALETENHSIFISKTIHVQYKEIGGIHNKKHLKK 362
                 678999************99766622567788899***************99998888999999999999999999987 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.21   6.3e+02       2      28 ..      58      88 ..      57     121 .. 0.60
   2 ?   -2.6   0.0         2     6e+03      13      39 ..     149     175 ..     147     200 .. 0.74
   3 ?    8.3   0.0   0.00084       2.5       3      29 ..     278     304 ..     276     338 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.21
       RRM_7  2 rkvFvGGlPiDiteeelkat....fkefgkv 28
                  vFv  l   +t++el  +    fk+fg++
  CCD24794.1 58 SCVFVASLTSTLTDDELCVSvtdyFKKFGEI 88
                5688888888888888765511115555553 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
       RRM_7  13 iteeelkatfkefgkvlvdwPkkaesk 39 
                 i+++e+++  ++fg++    Pk+  ++
  CCD24794.1 149 ISKMEIESICNKFGELDQLVPKRDDTQ 175
                 778899999999999988888885444 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00084
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvl 29 
                  +FvG lP + t+e+l++ f ++gk+l
  CCD24794.1 278 SIFVGQLPQETTKEDLETHFWKHGKIL 304
                 59**********************974 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   2.6     0.053   1.6e+02     104     141 ..      87     119 ..       5     139 .. 0.52
   2 ?   -0.2   0.0      0.35     1e+03      35      55 ..     155     175 ..     132     179 .. 0.81
   3 ?   -1.1   0.0      0.65   1.9e+03       2      25 ..     277     299 ..     276     311 .. 0.84
   4 ?    5.5   0.2    0.0061        18     120     154 ..     311     346 ..     301     365 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.053
    PHM7_cyt 104 eeldeeieeerekvkkkplgaaFvtfesersaaavakq 141
                 e +   ++ +r   ++  +++aFv++ + ++a++++k+
  CCD24794.1  87 EIVR--VKVLR---DQANRPYAFVQYTNDKDANNALKT 119
                 3332..22222...344689*************99852 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.35
    PHM7_cyt  35 vqivrdvkkldklveerekav 55 
                  +i+ ++++ld+lv +r++++
  CCD24794.1 155 ESICNKFGELDQLVPKRDDTQ 175
                 479**************9875 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.65
    PHM7_cyt   2 rTvlvtgiPkelrseeklkeffee 25 
                 ++++v ++P+e++ +e+l+++f +
  CCD24794.1 277 KSIFVGQLPQETT-KEDLETHFWK 299
                 579999******9.889***9976 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0061
    PHM7_cyt 120 kplga.aFvtfesersaaavak...qakcaaqiqqssnp 154
                 kp+++ aF+++ese+saaa+++   +   ++ i ++ + 
  CCD24794.1 311 KPTNVfAFIQYESEKSAAAALEtenH---SIFISKTIHV 346
                 566644**************986531...3344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1004  (0.0559987); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4424.62
//
Query:       CCD24795.1  [L=906]
Description: hypothetical protein NDAI_0D04820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-47  160.2   0.0    1.4e-45  155.5   0.0    2.6  2  AAA_2            AAA domain (Cdc48 subfamily)
    4.3e-28   97.3   6.9    1.1e-27   95.9   0.9    3.1  2  AAA_lid_9        AAA lid domain
      9e-23   81.2   0.1    1.8e-13   51.1   0.0    2.7  2  AAA              ATPase family associated with various cellul
    2.8e-22   78.6   0.5    9.7e-22   76.8   0.5    2.0  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    4.5e-15   55.8   0.1    4.1e-07   30.1   0.0    3.4  2  AAA_5            AAA domain (dynein-related subfamily)
    2.2e-13   50.1   4.9    1.4e-07   31.5   0.3    4.1  3  Clp_N            Clp amino terminal domain, pathogenicity isl
    2.3e-12   46.9   0.2    6.5e-08   32.5   0.0    2.7  2  Sigma54_activat  Sigma-54 interaction domain
    1.1e-08   35.6   4.3    0.00011   22.7   0.0    4.1  4  AAA_16           AAA ATPase domain
    3.9e-06   27.2   0.3        0.1   12.8   0.1    3.9  2  AAA_22           AAA domain
      2e-05   24.6   0.0      0.039   14.0   0.0    2.7  2  AAA_14           AAA domain
     0.0002   20.9   0.0      0.035   13.6   0.0    2.4  2  AAA_7            P-loop containing dynein motor region
    0.00033   20.1   0.0        1.2    8.5   0.0    3.4  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0012   18.6   0.0       0.13   11.9   0.0    2.9  3  AAA_24           AAA domain
     0.0016   18.6   0.0     0.0069   16.5   0.0    2.1  1  Torsin           Torsin
      0.002   17.9   0.0       0.21   11.3   0.0    2.5  2  IstB_IS21        IstB-like ATP binding protein
     0.0021   17.4   0.4       0.44    9.8   0.0    3.3  3  Zeta_toxin       Zeta toxin
     0.0023   17.9   7.0        3.9    7.3   0.1    4.8  4  ATPase_2         ATPase domain predominantly from Archaea
     0.0039   17.4   0.0       0.78    9.9   0.0    3.2  2  AAA_33           AAA domain
     0.0041   16.3   0.0       0.17   11.0   0.0    2.9  2  DUF815           Protein of unknown function (DUF815)
     0.0052   16.7   0.0        4.3    7.2   0.0    2.8  2  NACHT            NACHT domain
  ------ inclusion threshold ------
      0.014   15.9   3.2        1.9    9.0   0.0    3.7  3  ABC_tran         ABC transporter
       0.02   14.6   0.1        3.8    7.3   0.0    2.7  2  AAA_29           P-loop containing region of AAA domain
      0.022   14.7   0.0        3.1    7.7   0.0    2.9  2  RsgA_GTPase      RsgA GTPase
       0.03   14.5   0.0        8.7    6.6   0.0    2.9  2  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.047   13.6   0.0        1.1    9.2   0.0    2.8  2  AAA_3            ATPase family associated with various cellul
      0.047   12.4   0.0      0.081   11.6   0.0    1.3  1  PEPCK_ATP        Phosphoenolpyruvate carboxykinase
      0.048   14.0   0.1        7.9    6.9   0.0    3.0  2  RNA_helicase     RNA helicase
      0.065   13.0   0.0         14    5.3   0.0    2.7  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
        0.1   12.6   0.0        7.5    6.6   0.0    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
       0.52    9.1  16.2       0.94    8.3  16.2    1.5  1  Spc7             Spc7 kinetochore protein
       0.86   10.1   7.0        8.1    7.0   0.0    3.8  2  AAA_18           AAA domain
        3.3    8.1   8.7        7.2    7.0   2.3    3.7  2  BLOC1_2          Biogenesis of lysosome-related organelles co


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.43   2.4e+02       7      78 ..     209     287 ..     203     323 .. 0.70
   2 !  155.5   0.0   2.5e-48   1.4e-45       3     170 ..     607     768 ..     605     769 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.43
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS..............EEEEETGG CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG..............ivllDEid 78 
                  l+g+ gvGk+ + + +a+ +  +++ +    +a+ +         ++ l+  +++   +ee+               i+++DEi 
  CCD24795.1 209 CLIGEPGVGKSAIIEGVAQRII-DDDVPTLLQNAKLFSL------DLAALTAGAKYKGDFEERFkgvlkeveeskvliILFIDEIH 287
                 5778888888888888888876.7777777777777777......3344444444444444444557788888889999999*996 PP

  == domain 2  score: 155.5 bits;  conditional E-value: 2.5e-48
                 ---EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG---------- CS
       AAA_2   3 iisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessgad 89 
                  +s+l+lg +g+Gktelak++a +lf ++e+ +ir+d+sel e    + +vs+l+g++ gyvg++egG            ++l+DE++K+hp       
  CCD24795.1 607 PASFLFLGLSGSGKTELAKKIAGFLF-NDEDMMIRVDCSELGE----KYSVSKLLGTSAGYVGYDEGGfltnqlqykpysVLLFDEVEKAHP------- 693
                 589***********************.9***************....*********************************************....... PP

                 ---HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-STTTTSGGG--HHHHHHTT--HHHHTT--E CS
       AAA_2  90 vSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrskeeeeekkkeeveeelkkglipEllgRlpe 170
                     +V++++Lq+l++g++t  qg+++d++n+++Imt+++g++ i++++   ++ ++++ke v+ ++k++++pE+l+R+  
  CCD24795.1 694 ----DVLTVMLQMLDDGRITSGQGKTIDCSNCIIIMTSNLGAQYINNQKG--SKIQDATKELVMGAVKNHFRPEFLNRISS 768
                 ....*******************************************655..699***********************986 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.9     2e-30   1.1e-27       3     101 ..     346     446 ..     344     452 .. 0.92
   2 ?    3.0   0.6      0.17        95      65     100 ..     470     505 ..     461     508 .. 0.81

  Alignments for each domain:
  == domain 1  score: 95.9 bits;  conditional E-value: 2e-30
   AAA_lid_9   3 eetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeee..kekaer 99 
                  et++iLrgl++kye hHgv+i d+al++a++l+krY++ r+lPd+A+Dl+D  +a v+++++skpeel++ e++l+ +e e +ale++e+  ++ ++r
  CCD24795.1 346 RETVAILRGLQPKYEIHHGVRILDSALVTAAQLAKRYLPYRRLPDSALDLVDISCAGVAVARDSKPEELDSKERQLQLIEVEIKALERDEDadSTTKDR 444
                 79*************************************************************************************999844444555 PP

   AAA_lid_9 100 lk 101
                 lk
  CCD24795.1 445 LK 446
                 54 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.17
   AAA_lid_9  65 eskpeeleklekelaklekekealekeeekekaerl 100
                 ++  eel+k++k+l++le++  ++e++++++ a++l
  CCD24795.1 470 RHGHEELTKAKKKLDELENKALEAERRQDTATAADL 505
                 34568899************9999999999888776 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   3.2e-16   1.8e-13       2     118 ..     209     327 ..     208     341 .. 0.81
   2 !   27.2   0.0   7.6e-09   4.3e-06       2     111 ..     611     729 ..     610     741 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 3.2e-16
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeeervvn 87 
                 +l+G pG+GK+++++ va+ +          ++++++++++ l+   ky g+ e+++++++ke++e++    ilfiDEi+ l+++        +++++n
  CCD24795.1 209 CLIGEPGVGKSAIIEGVAQRIidddvptllqNAKLFSLDLAALTagAKYKGDFEERFKGVLKEVEESK-VlIILFIDEIHMLMGNG-------KDDAAN 299
                 79******************6666666666679999999999997788****************9998.55***************.......9999** PP

                 HHHHHHHHTTTSSSTEEEEEEESS..GGGSTHH CS
         AAA  88 qLlteldgvkkkeskvivigatnr..pdkldpa 118
                  L ++l++ +       vigat++  ++++ ++
  CCD24795.1 300 ILKPALSRGQL-----KVIGATTNneYRSIVEK 327
                 *******9988.....47777766344444443 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 7.6e-09
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS............STTHHHHHHHHHHHHHHHTS.TS.EEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk............yvgesekkirelfkeakeka.kp.silfiDEidalaksrsgseseeee 83 
                 l+ G  G GKT lak +a  l   +  ++++++sel +k            yvg  e  +      +   + kp s+l++DE+++ +++          
  CCD24795.1 611 LFLGLSGSGKTELAKKIAGFLfndEDMMIRVDCSELGEKysvskllgtsagYVGYDEGGFLTNQ--L---QyKPySVLLFDEVEKAHPDV--------- 695
                 899*****************96554779*********998888877776666666665442222..2...245779**********9999......... PP

                 HHHHHHHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  84 rvvnqLlteldgvkkk........eskvivigatnr 111
                   + ++l++ld+ +           s++i+i+++n 
  CCD24795.1 696 --LTVMLQMLDDGRITsgqgktidCSNCIIIMTSNL 729
                 ..**********999999999999788******997 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.5   1.7e-24   9.7e-22       1      80 [.     775     856 ..     775     857 .. 0.94

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 1.7e-24
                    SCHHHHHHHHHHHHHHHHHHSCT..TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlke..rgvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvr 80 
                    L++++++kIvd+++k+le+r+++  r+++l+v++ea+d+la+ gy+ ++GARpL+r+iq+ei+++la  il++e+ +++ v+
     CCD24795.1 775 LSRKAIHKIVDIRIKELEARFEAndRHYKLNVSPEAKDFLAKFGYSDDMGARPLNRLIQNEILNKLAVRILRKEVLDKEAVN 856
                    899******************654599***********************************************99988876 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.3e-07   0.00019       3      96 ..     209     312 ..     207     345 .. 0.76
   2 !   30.1   0.0   7.4e-10   4.1e-07       2     124 ..     610     731 ..     609     749 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 3.3e-07
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--H...HHHH--B--.........--------G-S...EEEEESGGG-....-HHHHHHHHHHHH CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrdtte...edlkgrreikngttslvdsplvraarege...ilvlDEvera....esevlnsLlslle 90 
                 +L+G+pG+gKs ++e +a+++  + v + + ++++ +   + l+ + ++k++ +++ +++l+ +++e++   il++DE++++    +++++n+L + l+
  CCD24795.1 209 CLIGEPGVGKSAIIEGVAQRIiDDDVPTLLQNAKLFSldlAALTAGAKYKGDFEERFKGVLK-EVEESKvliILFIDEIHMLmgngKDDAANILKPALS 306
                 9*********************7777777777766651114566677776777778888887.9998882334689****8644335899999999999 PP

                 SSEEE. CS
       AAA_5  91 errlll 96 
                 + +l +
  CCD24795.1 307 RGQLKV 312
                 988876 PP

  == domain 2  score: 30.1 bits;  conditional E-value: 7.4e-10
                 EEEE--SSSSHHHHHHHGGGGB......S--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSS CS
       AAA_5   2 vlLvGppGtgKselaerlaaal......nreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleer 92 
                 +l +G +G+gK+ela+++a +l        +v    l ++++ ++l+g     +     + + l+++ +    ++l++DEve+a+++vl ++l++l++ 
  CCD24795.1 610 FLFLGLSGSGKTELAKKIAGFLfndedmMIRVDCSELGEKYSVSKLLGTSA--GYVGYDEGGFLTNQLQykPYSVLLFDEVEKAHPDVLTVMLQMLDDG 706
                 7899******************95422222333334455666666666555..445555556677777787889************************* PP

                 EEE..-SSSEEE---......-EEEEEESS-- CS
       AAA_5  93 rllleeggelvkaknddllerfrviatanpld 124
                 r+     g+ ++++n        +i+t+n   
  CCD24795.1 707 RITS-GQGKTIDCSN------CIIIMTSNLGA 731
                 **94.4555666888......89999998765 PP

>> Clp_N  Clp amino terminal domain, pathogenicity island component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.2   8.7e-06    0.0048       1      26 [.      18      43 ..      18      54 .. 0.93
   2 !   31.5   0.3   2.4e-10   1.4e-07       1      52 [.      99     148 ..      99     149 .. 0.92
   3 ?    0.3   0.0       1.4   7.8e+02      24      52 ..     325     353 ..     324     354 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8.7e-06
                HHHHHHHTTCSSB-HHHHHHHHHHSC CS
       Clp_N  1 AqelAkslghqyistEHLLlALleed 26
                Aq+lA +++h ++ + HLL A++e +
  CCD24795.1 18 AQKLAEDHQHPQLQPIHLLAAFIETP 43
                9**********************976 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 2.4e-10
                 HHHHHHHTTCSSB-HHHHHHHHHHSCTSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N   1 AqelAkslghqyistEHLLlALleeddGlaarlLkkaGvdldalrkaiekll 52 
                 A +++k+ ++++i  +HLL AL++++   ++ ++k+  +d++a++++   l+
  CCD24795.1  99 AAKIQKQQKDSFIAQDHLLFALFNDS--SIQTVFKESQIDVEAIKQQALVLR 148
                 7899*******************987..******************976655 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 1.4
                 HSCTSHHHHHHHHTTSSHHHHHHHHHHHH CS
       Clp_N  24 eeddGlaarlLkkaGvdldalrkaiekll 52 
                  e+dG++ r ++k  v++ +lr+ +  l+
  CCD24795.1 325 VEKDGAFERRFQKIEVSEPTLRETVAILR 353
                 5899*******************997776 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00023      0.13       2     130 ..     187     318 ..     186     339 .. 0.70
   2 !   32.5   0.0   1.2e-10   6.5e-08      20     143 ..     605     728 ..     580     769 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00023
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE.HHHHHTTT CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk.Glfekadg 94 
                      ig++e+++++++ +++ +k+  +  + Ge G+GK+ + + + ++   ++ p +  n   ++ +l + +     kG F    +e+  G +++ ++
       CCD24795.1 187 IGREEEIRNTIRVLARRIKS--NPCLIGEPGVGKSAIIEGVAQRIIDDDVPTLLQNAKLFSLDLAALTAGAKYKGDF----EERFkGVLKEVEE 274
                      67777777777777666554..45677******************99999999988766666665555444445555....4443488888888 PP

                      S....EEEEETGGGS-HHHH...HHHHH.HHHHSEEESBTSSSE CS
  Sigma54_activat  95 G....tlfLDeigelplelQ...ekLlr.vlqegevervGsske 130
                      +    +lf+Dei+ l  ++    +++l+ +l +g+++ +G++++
       CCD24795.1 275 SkvliILFIDEIHMLMGNGKddaANILKpALSRGQLKVIGATTN 318
                      7555579******9987665121334433667777777776655 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 1.2e-10
                      TSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE..HHHHHTTTSEEEEETGGGS-HHHHH CS
  Sigma54_activat  20 ktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk..GlfekadgGtlfLDeigelplelQe 111
                      ++++s l +G sG+GK+ la++i     ++e  +++v+c+++ e+   s+L G+++G + G ++      +++    ++l++De+++  +++ +
       CCD24795.1 605 RQPASFLFLGLSGSGKTELAKKIAGFLFNDEDMMIRVDCSELGEKYSVSKLLGTSAG-YVGYDEGGFltNQLQYKPYSVLLFDEVEKAHPDVLT 697
                      456999************************************************998.8898887654578888999***************** PP

                      HHHHHHHHSEEESBTSSSEEE--EEEEEEESS CS
  Sigma54_activat 112 kLlrvlqegevervGsskeikvdvriiaatne 143
                       +l++l++g+++  G+ k+i+++  ii  t++
       CCD24795.1 698 VMLQMLDDGRITS-GQGKTIDCSNCIIIMTSN 728
                      ***********87.888888877777776654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.9e-07   0.00011       2      63 ..     186     244 ..     185     278 .. 0.75
   2 ?   -1.4   0.0       4.7   2.6e+03     110     146 ..     256     292 ..     237     313 .. 0.59
   3 !   11.3   0.0   0.00058      0.32       2      62 ..     580     645 ..     579     661 .. 0.73
   4 ?   -0.6   0.0       2.7   1.5e+03     137     159 ..     681     704 ..     670     713 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.9e-07
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 ++GReee++   ++l r  ++ p    l+Ge+GvGKs++++ +++++ +d++ +l ++++ +
  CCD24795.1 186 VIGREEEIRNTIRVLARRIKSNP---CLIGEPGVGKSAIIEGVAQRIIDDDVPTLLQNAKLF 244
                 78******666666655555544...578******************999877766666666 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 4.7
      AAA_16 110 elagaeasrllellkrllallsrderplvlvlDdlq....w 146
                 + +g+ ++r+  +lk+      + +  ++l++D+++     
  CCD24795.1 256 KYKGDFEERFKGVLKEVE----ESKVLIILFIDEIHmlmgN 292
                 444444444544444444....42334999***99965553 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00058
      AAA_16   2 lvGReeeleqLlsalervrsgrp.....elvllsGesGvGKsslvrellralekdggiflrgkcdq 62 
                 +vG  e ++++ +a++  rsg +      + l+ G sG+GK+ l+++++  l  d+   +r +c +
  CCD24795.1 580 VVGQMEAIKAVSNAVRLSRSGLSnprqpASFLFLGLSGSGKTELAKKIAGFLFNDEDMMIRVDCSE 645
                 67777788888888885555544556679****************999876666655555555555 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 2.7
      AAA_16 137 lvlvlDdlqwadeaslql.laaLl 159
                  vl++D++++a ++ l++ l+ L 
  CCD24795.1 681 SVLLFDEVEKAHPDVLTVmLQMLD 704
                 69**************99666554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   0.00019       0.1       9     126 ..     209     313 ..     202     324 .. 0.72
   2 !    9.3   0.0    0.0024       1.3       8      56 ..     610     652 ..     605     727 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00019
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst.sskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr.. 104
                 +++Ge+G+GK+  ++ ++++          +++     +p +  + k +  +l+  +   + +  ++ ee ++ + + +++ +v  +l iDE++ l+  
  CCD24795.1 209 CLIGEPGVGKSAIIEGVAQRII--------DDD-----VPTLLqNAKLFSLDLAALTAGAKYK--GDFEERFKGVLKEVEESKVLIILFIDEIHMLMgn 292
                 79*****************972........222.....2222225556666666666665666..8889999999999999888899999999999876 PP

      AAA_22 105 .seealeeLrsllnlsrkgvqli 126
                  +++a + L+  l   r ++++i
  CCD24795.1 293 gKDDAANILKPALS--RGQLKVI 313
                 54777777766555..6666655 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0024
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl 56 
                  +  G sG+GKT l+++++  l ++      ++  ++v+++++++  ++
  CCD24795.1 610 FLFLGLSGSGKTELAKKIAGFLFND------EDMMIRVDCSELGEKYSV 652
                 56679**************999765......778889999998854444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   6.9e-05     0.039       9     123 ..     212     341 ..     208     349 .. 0.67
   2 !    7.6   0.0    0.0064       3.6       8      90 ..     613     706 ..     608     715 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.9e-05
      AAA_14   9 GaRrvGKTtllkqlikell.......vkkesilyinldderd..kkla.dpekllelileklkeekkty..lflDEiqev.....pewekalkslvdeg 90 
                 G   vGK+ +++ ++++ +        ++ + + ++l   +   k ++ d+e+  + +l++++e  k +  lf+DEi+++     +++ ++lk  + +g
  CCD24795.1 212 GEPGVGKSAIIEGVAQRIIdddvptlLQNAKLFSLDLAALTAgaK-YKgDFEERFKGVLKEVEE-SKVLiiLFIDEIHMLmgngkDDAANILKPALSRG 308
                 55679******9999888899988655555555555555444432.223555556666666555.33333599*******9999999999999999999 PP

      AAA_14  91 knldvivtGSnskllsk.eiatslagrvaeiely 123
                  +l+vi +  n+   s  e    + +r ++ie+ 
  CCD24795.1 309 -QLKVIGATTNNEYRSIvEKDGAFERRFQKIEVS 341
                 .888886666655544325556667777777665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0064
      AAA_14   8 tGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe...........kllelileklkeekktylflDEiqev.pewekalkslvdeg 90 
                  G+  +GKT l+k+++  l+ +++ ++ +++ +  +k +  ++           +   ++ ++l+ +  ++l++DE+ ++ p++ +++ +++d+g
  CCD24795.1 613 LGLSGSGKTELAKKIAGFLFNDEDMMIRVDCSELGEKYSV-SKllgtsagyvgyDEGGFLTNQLQYKPYSVLLFDEVEKAhPDVLTVMLQMLDDG 706
                 688899**********888899999999999997774322.2222333344432222333333333456679*****987577777777777766 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   6.3e-05     0.035      33     113 ..     205     290 ..     191     303 .. 0.81
   2 ?    4.6   0.0     0.036        20      34      71 ..     608     645 ..     593     658 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.3e-05
       AAA_7  33 kkpvllvGptGtGKtviikdllkkldkekylsltin...fsaqtsanqlqdiiesklekrrkgvygPpggkkl..vvFvDDlnmpa 113
                 k + +l+G+ G+GK++ii+ + +++ ++++ +l  n   fs    a +     +  +e r kgv+    + k+  ++F+D+++m +
  CCD24795.1 205 KSNPCLIGEPGVGKSAIIEGVAQRIIDDDVPTLLQNaklFSLDLAALTAGAKYKGDFEERFKGVLKEVEESKVliILFIDEIHMLM 290
                 567789**************888877676655544444499999999999****************99988862367******976 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.036
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkekylsltinfsa 71 
                  ++l+ G +G+GKt ++k++   l +++ +++ + +s 
  CCD24795.1 608 ASFLFLGLSGSGKTELAKKIAGFLFNDEDMMIRVDCSE 645
                 578***************98888777777777777665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.075        42      22      49 ..     205     232 ..     183     264 .. 0.68
   2 !    8.5   0.0    0.0021       1.2      24      48 ..     609     633 ..     575     660 .. 0.71
   3 ?    3.9   0.0     0.055        31     109     159 ..     682     730 ..     676     778 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.075
  Mg_chelatase  22 gHnlllvGppGsGKtmlakrlpsllppl 49 
                   + n  l+G pG GK+ +++ +++ + + 
    CCD24795.1 205 KSNPCLIGEPGVGKSAIIEGVAQRIIDD 232
                   567789*********9988776655554 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0021
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllpp 48 
                   ++l++G +GsGKt lak++++ l +
    CCD24795.1 609 SFLFLGLSGSGKTELAKKIAGFLFN 633
                   589****************998854 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.055
  Mg_chelatase 109 vLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpc 159
                   vL++DE+ + + +vl v+ + l+dg++t    + k+   +++ ++++ N+ 
    CCD24795.1 682 VLLFDEVEKAHPDVLTVMLQMLDDGRITSG--QGKTIDCSNCIIIMTSNLG 730
                   99***********************98754..3444445677777777765 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.095        53       6      21 ..     209     224 ..     205     291 .. 0.89
   2 !   11.9   0.0   0.00024      0.13       3      92 ..     608     706 ..     606     716 .. 0.85
   3 ?   -2.0   0.0       4.4   2.4e+03      11      56 ..     710     753 ..     709     772 .. 0.64

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.095
      AAA_24   6 liyGpsgiGKTtlake 21 
                 +++G++g+GK+ ++  
  CCD24795.1 209 CLIGEPGVGKSAIIEG 224
                 89*********98765 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00024
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel...........aaeladyktlviDtideleelclaevirqne 90 
                 +++l  G sg+GKT lak++   +lf d ++ + ++d  ++ +  s+ ++l + +             + ++++y++l +D ++++   +l  + ++  
  CCD24795.1 608 ASFLFLGLSGSGKTELAKKI-AGFLFNDEDM-MIRVDCSELGEKYSVSKLLGTSAGYvgydeggfltnQLQYKPYSVLLFDEVEKAHPDVLTVMLQMLD 704
                 5678899*************.*******999.77889888887778888888877778999******999****************9999988888877 PP

      AAA_24  91 ka 92 
                 ++
  CCD24795.1 705 DG 706
                 74 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4.4
      AAA_24  11 sgiGKTtlakelgpkplfidtek.Glksldadkfpdie.swedfldev 56 
                 sg GKT  +++     ++i t + G++ +++ k+ +i+ + ++++  +
  CCD24795.1 710 SGQGKTIDCSNC----IIIMTSNlGAQYINNQKGSKIQdATKELVMGA 753
                 788999999998....66666666999999999998876444444433 PP

>> Torsin  Torsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-05    0.0069      14      80 ..     567     634 ..     559     643 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.2e-05
                 --HHHHHHHHHHH--S-HHHHHHHHHHHH.HHHT-SS-SS-EEEEEEE-TTSSHHHHHHHHHHHHSTT CS
      Torsin  14 anleeLekdlekklfGqhlvkklvvksvk.aylenekpkkpLvlsfhGwtGtGknfvaeiiaenlyrd 80 
                  +l ++e+dl+++++Gq  + k v ++v+ +     +p++p  + f G +G+Gk  +a+ ia  l++d
  CCD24795.1 567 EKLIHMENDLSSQVVGQMEAIKAVSNAVRlSRSGLSNPRQPASFLFLGLSGSGKTELAKKIAGFLFND 634
                 4667899*********************934455679*************************999976 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00037      0.21      47     113 ..     205     279 ..     193     318 .. 0.73
   2 ?    3.7   0.0     0.081        45      47      69 ..     607     629 ..     588     657 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00037
   IstB_IS21  47 kenivllGpsGvGKshlaialgveavraglsvlfvrve....dLveelkrarrdgklara....lkrllkvdlli 113
                 k n +l+G +GvGKs +   ++++ + +++ +l + ++    dL +  + a+ +g ++++    lk++ ++++li
  CCD24795.1 205 KSNPCLIGEPGVGKSAIIEGVAQRIIDDDVPTLLQNAKlfslDLAALTAGAKYKGDFEERfkgvLKEVEESKVLI 279
                 6789*************************9999888763333455555556655555444111145555556665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.081
   IstB_IS21  47 kenivllGpsGvGKshlaialgv 69 
                  +++++lG sG GK+ la  ++ 
  CCD24795.1 607 PASFLFLGLSGSGKTELAKKIAG 629
                 57899*************98875 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.15        83      21      40 ..     210     229 ..     197     237 .. 0.87
   2 ?   -0.4   1.1       1.1   5.9e+02     139     177 ..     452     490 ..     423     506 .. 0.75
   3 !    9.8   0.0   0.00079      0.44      12      50 ..     603     642 ..     594     649 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.15
  Zeta_toxin  21 lgGqpGAGKselaellkdel 40 
                 l G pG GKs+++e +++++
  CCD24795.1 210 LIGEPGVGKSAIIEGVAQRI 229
                 5599**********999886 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.1
  Zeta_toxin 139 gvldRyeeevae.....gRlvpkeehdeafeglresvealeeek 177
                 ++  R+     e      R+ ++++  e  +++++++++le++ 
  CCD24795.1 452 EASIRE-----EleplrQRYNEERHGHEELTKAKKKLDELENKA 490
                 333444.....1445546***********************986 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00079
  Zeta_toxin  12 sqerPklillgGqpGAGKselaellkdele.rqgnvvrld 50 
                 + ++P++ l  G +G+GK+ela++++  l   ++ ++r+d
  CCD24795.1 603 NPRQPASFLFLGLSGSGKTELAKKIAGFLFnDEDMMIRVD 642
                 4589*********************999885666677776 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.046        26       4      44 ..     189     229 ..     187     237 .. 0.74
   2 !    7.3   0.1     0.007       3.9     100     143 ..     259     302 ..     239     307 .. 0.82
   3 ?    2.6   0.1       0.2   1.1e+02      50      99 ..     505     554 ..     493     572 .. 0.80
   4 ?    2.7   0.0      0.18        98      23      44 ..     611     631 ..     602     652 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.046
    ATPase_2   4 Rekelke.leeilerepneiyfiYGpegsGKtaLlkeiienl 44 
                 Re+e+++ ++ +++r ++++ +  G  g+GK+a++  ++++ 
  CCD24795.1 189 REEEIRNtIRVLARRIKSNPCL-IGEPGVGKSAIIEGVAQRI 229
                 9****87155555555555555.5***********9998886 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.007
    ATPase_2 100 klvfkaielllekikkkgkkiiiiiDelqklidlglngaellvk 143
                  + ++ ++ +l+++++++  ii++iDe+ +l   g + a++ +k
  CCD24795.1 259 GDFEERFKGVLKEVEESKVLIILFIDEIHMLMGNGKDDAANILK 302
                 567788999**********************9777777766665 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.2
    ATPase_2  50 yviyyialreesiskldefieeeeekkklekalgiavpkaeleeilkeks 99 
                  + + i+  +e+i+k+++ ++eee++  ++ +++++v ++++ e   + +
  CCD24795.1 505 LRYFAIPGVKEQIAKFENQVAEEEKRAGANSMIQNVVDSDTISETAARLT 554
                 678999999***************************99999987755444 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.18
    ATPase_2  23 yfiYGpegsGKtaLlkeiienl 44 
                 +f  G  gsGKt L k+i+  l
  CCD24795.1 611 LF-LGLSGSGKTELAKKIAGFL 631
                 44.399**********998655 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.13        71       4      22 ..     210     228 ..     209     280 .. 0.90
   2 !    9.9   0.0    0.0014      0.78       3      20 ..     611     628 ..     610     656 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.13
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 l+G pG+GKs  +e+++++
  CCD24795.1 210 LIGEPGVGKSAIIEGVAQR 228
                 69************99975 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0014
      AAA_33   3 llvGlpGsGKstlaerll 20 
                 l+ Gl+GsGK+ la++++
  CCD24795.1 611 LFLGLSGSGKTELAKKIA 628
                 799************987 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0003      0.17      39      81 ..     191     233 ..     168     342 .. 0.75
   2 ?    1.6   0.0      0.22   1.3e+02      51     104 ..     605     658 ..     562     699 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0003
      DUF815  39 alventeqfleglpannvLLwGarGtGKSslvkallneyaeeg 81 
                 + ++nt + l+ +  +n  L+G+ G+GKS+++  + +++ ++ 
  CCD24795.1 191 EEIRNTIRVLARRIKSNPCLIGEPGVGKSAIIEGVAQRIIDDD 233
                 4468999999999999999****************99998876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.22
      DUF815  51 lpannvLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklvellre 104
                 ++    L+ G  G+GK  l k +   + +++  +i v+ ++l e  ++ +ll +
  CCD24795.1 605 RQPASFLFLGLSGSGKTELAKKIAGFLFNDEDMMIRVDCSELGEKYSVSKLLGT 658
                 555678999**************9999999999999999999887777766654 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0076       4.3       4      31 ..     209     236 ..     207     255 .. 0.83
   2 ?    6.3   0.0     0.015       8.5       5      21 ..     612     628 ..     609     691 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0076
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpq 31 
                 +l Ge+G+GK++ ++++a+ + +++ p 
  CCD24795.1 209 CLIGEPGVGKSAIIEGVAQRIIDDDVPT 236
                 799***************9988877765 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.015
                 EEC-TTTCHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqkla 21 
                   G +GsGKT L++k+a
  CCD24795.1 612 FLGLSGSGKTELAKKIA 628
                 6799************8 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.072        40      16      36 ..     210     230 ..     205     313 .. 0.78
   2 ?   -0.6   0.8       3.2   1.8e+03      49      96 ..     440     490 ..     415     550 .. 0.65
   3 ?    9.0   0.0    0.0035       1.9      16      41 ..     612     637 ..     606     759 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.072
                 EEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagllk 36 
                 ++Ge G GKS +++ +a+   
  CCD24795.1 210 LIGEPGVGKSAIIEGVAQRII 230
                 89**********998877665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 3.2
                 GGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx RF
    ABC_tran  49 lkeqeleslrkeigvlpqepqlfpeltvren...esdeeiekalsklglke 96 
                 +++++l+++r++ + + +e +  ++  ++e+   e+  +++k l++l++k 
  CCD24795.1 440 TTKDRLKQARQKEASIREELEPLRQRYNEERhghEELTKAKKKLDELENKA 490
                 333667777777777777744444444666645422222333333333333 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0035
                 EEESTTSSHHHHHHHHTTSS--SEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagllkpteGe 41 
                 ++G +G+GK+ L+k +ag l ++e+ 
  CCD24795.1 612 FLGLSGSGKTELAKKIAGFLFNDEDM 637
                 79****************98777664 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0068       3.8      24      41 ..     207     224 ..     195     229 .. 0.81
   2 ?    4.1   0.1     0.069        39      24      36 ..     609     621 ..     599     626 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0068
      AAA_29  24 atlltGpsGsGKSTllDA 41 
                 +  l+G+ G+GKS+++  
  CCD24795.1 207 NPCLIGEPGVGKSAIIEG 224
                 5689***********976 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.069
      AAA_29  24 atlltGpsGsGKS 36 
                 ++l+ G sGsGK+
  CCD24795.1 609 SFLFLGLSGSGKT 621
                 59**********8 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0056       3.1      86     120 ..     193     226 ..     160     237 .. 0.74
   2 ?    3.6   0.0     0.098        55      96     121 ..     604     629 ..     549     644 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0056
                  THTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  86 tkegleelkellkdktsvlvGqSGvGKStLinall 120
                   +++++ l++++k+   +l+G+ GvGKS++i+ ++
   CCD24795.1 193 IRNTIRVLARRIKS-NPCLIGEPGVGKSAIIEGVA 226
                  34555666666665.4689***********98765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.098
                  HCTTSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  96 llkdktsvlvGqSGvGKStLinallp 121
                    +    +++G SG GK+ L +++++
   CCD24795.1 604 PRQPASFLFLGLSGSGKTELAKKIAG 629
                  55567789************999876 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.016       8.7       3      25 ..     209     231 ..     208     248 .. 0.83
   2 ?    4.6   0.0     0.066        37       3      27 ..     611     635 ..     609     653 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.016
                 EEESSTTSSHHHHHHCHCT-CCC CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfs 25 
                 +l+G+ gvGK+ +++ + ++ ++
  CCD24795.1 209 CLIGEPGVGKSAIIEGVAQRIID 231
                 69************988776655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.066
                 EEESSTTSSHHHHHHCHCT-CCC-E CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsek 27 
                 +++G sg+GKt l+k++    f+++
  CCD24795.1 611 LFLGLSGSGKTELAKKIAGFLFNDE 635
                 689************9987777655 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.91   5.1e+02       5      23 ..     211     229 ..     209     272 .. 0.74
   2 ?    9.2   0.0    0.0019       1.1      64     110 ..     681     727 ..     610     737 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.91
       AAA_3   5 egvPGlaktllvkalakal 23 
                  g PG++k  +++ +a+ +
  CCD24795.1 211 IGEPGVGKSAIIEGVAQRI 229
                 588***********99864 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0019
       AAA_3  64 nllladeinrappktqsalleameerqvtve.gethklpepflvlatq 110
                 ++ll de+++a p + + +l+++++ ++t + g+t + ++  + + t 
  CCD24795.1 681 SVLLFDEVEKAHPDVLTVMLQMLDDGRITSGqGKTIDCSNCII-IMTS 727
                 689*************************986155666555544.4454 PP

>> PEPCK_ATP  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00015     0.081     212     242 ..     609     639 ..     584     643 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                 EEEEEE-TTSSHHHHH-BTTB-EEESSEEEE CS
   PEPCK_ATP 212 valfFGLSGtGKTtLsadperkligdDehgw 242
                 + lf+GLSG+GKT L++     l  d+++++
  CCD24795.1 609 SFLFLGLSGSGKTELAKKIAGFLFNDEDMMI 639
                 559***************9999999998865 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.014       7.9       2      24 ..     209     231 ..     208     244 .. 0.87
   2 ?    3.7   0.0      0.14        80       2      20 ..     611     629 ..     610     656 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.014
  RNA_helicase   2 wlyGpsgeGKStlakeLakallk 24 
                   +l G++g+GKS +++ +a+++ +
    CCD24795.1 209 CLIGEPGVGKSAIIEGVAQRIID 231
                   689************99998874 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.14
  RNA_helicase   2 wlyGpsgeGKStlakeLak 20 
                   ++ G sg GK+ lak++a 
    CCD24795.1 611 LFLGLSGSGKTELAKKIAG 629
                   57899***********764 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0      0.04        22       5      74 ..     212     289 ..     210     303 .. 0.77
   2 ?    5.3   0.0     0.025        14       4      81 ..     613     698 ..     610     708 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.04
  Viral_helicase1   5 GvpGcGKStlirkllrtsliltvnrptaelltegk...........pklpnlsvrtvdsflmalvkstkgkililDEylll 74 
                      G pG GKS +i  +++   i+  ++p + l ++ +            k + +  ++++ +l+   +s+   il++DE+ +l
       CCD24795.1 212 GEPGVGKSAIIEGVAQR--IIDDDVP-TLLQNAKLfsldlaaltagAKYKGDFEERFKGVLKEVEESKVLIILFIDEIHML 289
                      669********999998..5555555.444444445555588888877777888889999999999988999999**9887 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.025
  Viral_helicase1   4 hGvpGcGKStlirkllrts.....liltvnrptaelltegk.........pklpnlsvrtvdsflmalvkstkgkililDEylllhaGyill 81 
                       G  G+GK+ l +k++        + ++v+++  el  + +          +++ +++     fl ++++ + + +l++DE  ++h+ ++ +
       CCD24795.1 613 LGLSGSGKTELAKKIAGFLfndedMMIRVDCS--ELGEKYSvskllgtsaGYVGYDEGG----FLTNQLQYKPYSVLLFDEVEKAHPDVLTV 698
                      58889******999998866665644444444..3333333544554444444444444....66677777779999999999999866665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.013       7.5       4      43 ..     190     229 ..     187     236 .. 0.85
   2 ?    3.3   0.0      0.14        79      22      41 ..     610     629 ..     578     641 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE   4 eeetealgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                 eee+++  + la+ +++  +L G+ G+GK++++ g+a+ +
  CCD24795.1 190 EEEIRNTIRVLARRIKSNPCLIGEPGVGKSAIIEGVAQRI 229
                 678888888899988899******************9986 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.14
                 EEEEESTTSSHHHHHHHHHH CS
        TsaE  22 ilLeGdLGaGKTtlvrglak 41 
                 +l+ G  G+GKT l++++a 
  CCD24795.1 610 FLFLGLSGSGKTELAKKIAG 629
                 7788999*********9986 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  16.2    0.0017      0.94     146     263 ..     419     537 ..     412     587 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0017
        Spc7 146 enlegleedkelLekqeeel...dellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelke 241
                 ++l+ +e + + Le++e+     ++ l++ ++++a+++eele l+++++e e   +eeL +++++l+el+++  e +++ ++  +  +    +i  +ke
  CCD24795.1 419 RQLQLIEVEIKALERDEDADsttKDRLKQARQKEASIREELEPLRQRYNE-ERHGHEELTKAKKKLDELENKALEAERR-QDTATAADLRYFAIPGVKE 515
                 56666666777777766654001455566677788*************99.9999*************99988733333.23333333334578999** PP

        Spc7 242 qkseleeeiaeaervleeckgw 263
                 q++++e+++ae+e+   ++ ++
  CCD24795.1 516 QIAKFENQVAEEEKRAGANSMI 537
                 **********999987665544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.056        31       2      21 ..     209     228 ..     209     274 .. 0.87
   2 ?    7.0   0.0     0.014       8.1       3      19 ..     612     628 ..     611     693 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.056
      AAA_18   2 lltGtpGvGKttlakeLskr 21 
                 +l G pGvGK+ + + +++r
  CCD24795.1 209 CLIGEPGVGKSAIIEGVAQR 228
                 789**********9988877 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.014
      AAA_18   3 ltGtpGvGKttlakeLs 19 
                   G +G+GKt+lak ++
  CCD24795.1 612 FLGLSGSGKTELAKKIA 628
                 579***********994 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2      0.37     2e+02      54      78 ..     408     432 ..     403     434 .. 0.90
   2 ?    7.0   2.3     0.013       7.2      31      81 ..     440     490 ..     435     496 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.37
     BLOC1_2  54 nekyeelqpylqqidqiekqvteLe 78 
                 ++k eel+++ +q++ ie +++ Le
  CCD24795.1 408 DSKPEELDSKERQLQLIEVEIKALE 432
                 57889*******************9 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.013
     BLOC1_2  31 aasekykklkdvaaslekkleklnekyeelqpylqqidqiekqvteLeeav 81 
                 ++  + k+ +++ as++++le l+++y+e +   +++ + +k+++eLe+ +
  CCD24795.1 440 TTKDRLKQARQKEASIREELEPLRQRYNEERHGHEELTKAKKKLDELENKA 490
                 678899999***************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1314  (0.0732891); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 5994.28
//
Query:       CCD24796.1  [L=307]
Description: hypothetical protein NDAI_0D04830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-18   65.4   0.0    3.8e-17   62.5   0.0    2.3  2  Fe-S_biosyn  Iron-sulphur cluster biosynthesis
  ------ inclusion threshold ------
      0.043   14.0   1.7       0.48   10.6   0.0    2.4  2  DUF3853      Protein of unknown function (DUF3853)


Domain annotation for each model (and alignments):
>> Fe-S_biosyn  Iron-sulphur cluster biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.12   1.1e+03      73     106 ..     121     154 ..      66     156 .. 0.59
   2 !   62.5   0.0   4.2e-21   3.8e-17       3     111 .]     204     303 ..     202     303 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.12
                  GGGHHHS.TTEEEEEEEETTEEEEEEETCCEEEE CS
  Fe-S_biosyn  73 syslvfldeglvldfvedlgtlgLksdngilddn 106
                  ++++v+ +++  +d +e +++ +Lk  ++i++++
   CCD24796.1 121 PSKEVLAEQKKLIDEKEAKEQQRLKEAEKIVKTA 154
                  3444445555556777777777777777777665 PP

  == domain 2  score: 62.5 bits;  conditional E-value: 4.2e-21
                  EEE-HHHHHHHHHHHHCTTEC.EEEEEECCTSCCGGS.TT.EEEEEEEEESSTSTTTEEEEEETTEEEEEEGGGHHHS.TTEEEEEEEETTEEEEEEE CS
  Fe-S_biosyn   3 itlteaAaeklkkllaedkke.lrLdvddgggpyskggCsiggkyslvlvdeedeeydevlesnggkvyvksyslvfldeglvldfvedlgtlgLksd 99 
                  itl+++A+ +lk+l+++ + + +r++ ++ g       Cs g+ y+l++++e+  ++de +e++g+k++++s++l     g ++d+ +d+ + ++ ++
   CCD24796.1 204 ITLSPKAIVHLKALMDQPEPKmIRVGTRNRG-------CS-GTTYDLQYITEP-GKFDEIVEQDGIKIVIDSKALFSV-VGSEMDWIDDKLAAKFVFK 291
                  9****************66666*********.......**.************.************************.9****************** PP

                  TCCEEEEEEEEE CS
  Fe-S_biosyn 100 ngilddnvglgk 111
                  n++ ++++g+g+
   CCD24796.1 292 NPNSKGTCGCGE 303
                  **********85 PP

>> DUF3853  Protein of unknown function (DUF3853)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.5     0.032   2.9e+02      11      48 ..     118     155 ..     110     171 .. 0.81
   2 ?   10.6   0.0   5.4e-05      0.48      56      94 ..     234     274 ..     225     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.032
     DUF3853  11 lkmtGeellfLlkkaetkeeaktpkadakeekkfvyGi 48 
                 + m  +e+l  +kk+ +++eak ++  +++ek   + +
  CCD24796.1 118 YSMPSKEVLAEQKKLIDEKEAKEQQRLKEAEKIVKTAM 155
                 578899999999**********9988777777655555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 5.4e-05
     DUF3853  56 Gislpta..nrikksGkiDkaitqiGrkiivDadlaLelak 94 
                 G+s +t   + i + Gk D+ + q G ki++D++  +++++
  CCD24796.1 234 GCSGTTYdlQYITEPGKFDEIVEQDGIKIVIDSKALFSVVG 274
                 777777522579999*****************998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2559  (0.14273); expected 358.6 (0.02)
Passed bias filter:                      703  (0.0392102); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 2246.40
//
Query:       CCD24797.1  [L=639]
Description: hypothetical protein NDAI_0D04840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-39  134.8  31.7    3.2e-39  134.8  31.7    2.0  2  MFS_1     Major Facilitator Superfamily
    1.7e-09   37.0  27.4    1.9e-09   36.9  24.3    2.5  2  Sugar_tr  Sugar (and other) transporter
    4.7e-09   35.2   5.1    8.6e-09   34.4   5.1    1.4  1  TRI12     Fungal trichothecene efflux pump (TRI12)


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.8  31.7   5.4e-43   3.2e-39       9     352 ..     213     588 ..     201     589 .. 0.88
   2 ?    1.2   6.7     0.024   1.4e+02     133     172 ..     583     623 ..     577     636 .. 0.80

  Alignments for each domain:
  == domain 1  score: 134.8 bits;  conditional E-value: 5.4e-43
       MFS_1   9 alarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalg.lllllfasslwlllvlrvlqGlgagalfpag 106
                 ++++si+g+a+   + e + +   ++ l +tly lg+av+ +++++ls+ +Grr vl++++++f+++ +++++ a +l +++++r+++G+ ++a ++++
  CCD24797.1 213 SMGSSIFGSAVL-QICEIYDVIQVVAILGITLYVLGFAVSPVIYAPLSEIYGRRGVLVISAFAFCIFqFAVAT-AENLQTIMICRFFSGVIGSAPMAVV 309
                 466666777777.5667777888889999**************************************655555.48888******************** PP

       MFS_1 107 aaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee............kgtgp 193
                  a++ad+f  + rg+ai l+s+++ +G+il p++g+++a+   Wr++ y+++i++ ++fvl++l++ e+++++  ++++++             +  ++
  CCD24797.1 310 PAAFADMFDTNLRGKAICLFSLFVFVGPILSPVFGSYMAQRTTWRWLEYVVGIFAGVVFVLIVLFYEETHHPSILVNKAKQMrkqsnnwgihaaHENVE 408
                 *********************************************************************************999999988888855555 PP

       MFS_1 194 aplvpawkallkdpvlw.....illialllfffgfsglltllply.lqevlglsglllaglllallalvgailallagrlsdr...........lgrrr 275
                  ++++++++ +++p ++     +lli+ ++++f++ +l+ ll  y +++v g++ ++++g l+ ++ +vg+ ++ ++ +++d            l ++ 
  CCD24797.1 409 LSIKDIIQKTVTRPIFMlftepMLLIITIYNSFVYGILYLLLEAYpIVFVEGYG-FIENGELPYIALIVGMLVCSFFIWYMDTdylkrcakkggLVPEA 506
                 555557777777776644567799*************99999999889999999.**************************999*999999999889** PP

       MFS_1 276 rlllallllllaalglallavtssavllllvlvl......iGf.glgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 rlll++l  +++ +g++++ +t +++  + ++v       iGf   g++ p+l++++ +++    a++a++++++++s  ga++
  CCD24797.1 507 RLLLMILPSIFFPIGILWFCWTGNYPEKIHFMVPtvaggfIGFgLIGIFLPCLNYIIESYL--LLAASAVAANTFLRSGFGAVF 588
                 **********************6666666533334445559**999999************..9**********9999666665 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.024
       MFS_1 133 Ga.ilgpllggllasslgWravfyilaivsllafvlfllll 172
                 G+ ++ pl++g++ ++lg  ++ ++l+++++ ++ + lll+
  CCD24797.1 583 GFgAVFPLFAGYMFHNLGIGWSGLVLGLFAAAMIPVPLLLY 623
                 4447889***********************99988666666 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.5    0.0012       7.4     320     377 ..     199     260 ..     193     261 .. 0.60
   2 !   36.9  24.3   3.1e-13   1.9e-09      49     430 ..     238     616 ..     230     624 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHH.HH....HHHHTTSS.........CHHHHHHHHHHHHHHHTTTTHHHHHHHHH CS
    Sugar_tr 320 lllGaagmaicfvi.lg..ivalllvaks......kaasivaivfialfialfalgwgpvpwvlvsE 377
                 ++l+++ ++ c  i +g  i   +++a        +++++vai +i l++  fa  + pv++  +sE
  CCD24797.1 199 VILCVVLCLDCIGIsMGssI---FGSAVLqiceiyDVIQVVAILGITLYVLGFA--VSPVIYAPLSE 260
                 55555555444333033321...2222223335569******************..66777777777 PP

  == domain 2  score: 36.9 bits;  conditional E-value: 3.1e-13
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlai 147
                  l   ++++G +++ ++  +l++++GR+ +l+i+a+ f+i ++  a+a+   +++ ++++R+++G+   +  ++vP   + +  ++lRg+ + l+ l++
  CCD24797.1 238 ILGITLYVLGFAVSPVIYAPLSEIYGRRGVLVISAFAFCIFQFAVATAE---NLQTIMICRFFSGVIGSAPMAVVPAAFADMFDTNLRGKAICLFSLFV 333
                 56667899*****************************************...9********************************************** PP

                 HHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHG.GGS---HHHHHHTT-HHHHHHHHHHHHHC..HHHHHHHH.HHHHHHHHHHH.....H CS
    Sugar_tr 148 tfGilvaaifglglnktsnadgwrillglqlvpallllill.lflPESPrylvekgkeeeakevlaklrge..edadrela.eekdsleaeqeeekasw 242
                  +G +++ +fg  +++ +    wr+l ++  ++a ++++l+ lf +E+ +  + ++k   ak++ ++++++    a+++++  +kd ++++       +
  CCD24797.1 334 FVGPILSPVFGSYMAQRTT---WRWLEYVVGIFAGVVFVLIvLFYEETHHPSILVNK---AKQMRKQSNNWgiHAAHENVElSIKDIIQKT------VT 420
                 **********988887777...********999988776654999***888888884...4555555444443444444331333444444......23 PP

                 TTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHH.......HHHHHHHHHHH CS
    Sugar_tr 243 kellssktvrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllG.......aagmaicfvil 334
                 ++++  +t    lli+  +++f     +  +  y+ ++ e  g+ +  +   i  +v ++++ + i+ +d    +++   G       ++ m++  +++
  CCD24797.1 421 RPIFMLFT-EPMLLIITIYNSFVYGILYLLLEAYPIVFVEGYGFIENGELPYIALIVGMLVCSFFIWYMDTDYLKRCAKKGglvpearLLLMILPSIFF 518
                 34444433.222444444444443333344445666666666666664444444444444444444444443333344444333344433333322222 PP

                 H....HHHHTTSS....CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHH CS
    Sugar_tr 335 g..ivalllvaks.kaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfi 430
                    i  + ++ +  + + +++ +    fi +  +g+   +  ++ E +   + ++a a  +++   +  +  l+  +++ ++g g+++lv + +a+++i
  CCD24797.1 519 PigILWFCWTGNYpEKIHFMVPTVAGGFIGFGLIGIFLPCLNYIIESYL-LLAASAVAANTFLRSGFGAVFPLFAGYMFHNLGIGWSGLVLGLFAAAMI 616
                 2213333333222444455555555555555555544333344444433.3444555555566666666666666666666666666666666666555 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   5.1   1.4e-12   8.6e-09      82     233 ..     239     394 ..     205     401 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 1.4e-12
       TRI12  82 lfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgva.agpagasplfvgelmsnktkflgllivsipvvvts 179
                 l  tl+ +g avs ++   l++ +grr +++++     +     +ta++++t++ +  + gv  + p    p    +++  + +   + + s+ v v  
  CCD24797.1 239 LGITLYVLGFAVSPVIYAPLSEIYGRRGVLVISAFAFCIFQFAVATAENLQTIMICRFFSGVIgSAPMAVVPAAFADMFDTNLRGKAICLFSLFVFVGP 337
                 5579***********************988887777777788889************999986267999999999999999999999999999999999 PP

       TRI12 180 glspylgqrlaiqgswrwifyiyiitsaiavllivvwy...yppsfaqlhgkkvrkr 233
                  lsp +g  +a + +wrw+ y+  i + +  +liv++y   + ps+   + k++rk+
  CCD24797.1 338 ILSPVFGSYMAQRTTWRWLEYVVGIFAGVVFVLIVLFYeetHHPSILVNKAKQMRKQ 394
                 9************************************95556677777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.29s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 4137.73
//
Query:       CCD24798.1  [L=1544]
Description: hypothetical protein NDAI_0D04850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.4e-08   32.2   0.2    2.8e-06   27.0   0.0    2.4  2  Peptidase_M1    Peptidase family M1 domain
    2.2e-07   31.2   2.6      0.011   15.9   0.7    3.0  2  Peptidase_M1_N  Peptidase M1 N-terminal domain
  ------ inclusion threshold ------
       0.13   11.5  15.8       0.23   10.8  15.8    1.3  1  BUD22           BUD22
       0.36   10.2  12.9       0.67    9.3  12.9    1.3  1  CDC27           DNA polymerase subunit Cdc27
        1.3    7.2  11.2        2.5    6.3  11.2    1.5  1  CDC45           CDC45-like protein
        8.1    6.3  14.3         22    4.9  14.3    1.7  1  RPN2_C          26S proteasome regulatory subunit RPN2 C-term


Domain annotation for each model (and alignments):
>> Peptidase_M1  Peptidase family M1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   9.5e-10   2.8e-06       8     122 ..     507     616 ..     502     650 .. 0.81
   2 ?    2.4   0.0     0.033     1e+02     112     173 ..     676     738 ..     655     760 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 9.5e-10
                   HHHHHHHHHHTS--SSSEEEEEEESSTTSSEEEETTEEEEEGGGC-SSTTTS-HHHHHHHHHHHHHHHHHHHBTTTEEESSGGGGHHHHHHHHHHHH CS
  Peptidase_M1   8 kllefleeyfkvpYplpkldlvalpdfsagAMEnwglityreelllvdpenssesdkrsvaeviaHElaHqWfGnlVtmkwWddlwLnEGfatyley 104
                   k+++f++++f+ +Yp++ + +v+lp  s + M   +l++++   ll+ p+  +   + ++++  a  +a qW+G  +t    +d+w   G+a y+  
    CCD24798.1 507 KIIDFYSKEFG-SYPFTSYAMVFLPTVSDMTMDFASLTICNT-RLLYRPDIIDL--MFETTNQLAWSIANQWSGVNITPMEVNDIWCCIGMAGYMVL 599
                   78999999986.7*******************9999988765.67788777666..667778899******************************** PP

                   HHHHHHSCCCHCHHHHHH CS
  Peptidase_M1 105 lildklepewevseqlll 122
                   ++++ l +++e++ +l +
    CCD24798.1 600 QFSKTLLGNNEFKYRL-T 616
                   ******9988855444.2 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.033
                   CCCHCHHHHHHHCHHHHHHHHTSTTHHHSS..GG-GSHHHHHHTSSHHHHHHHHHHHHHHHHHC CS
  Peptidase_M1 112 pewevseqllleeveealsedaldeshpit..qevekpseidevFdsiaYeKGasllrmlekll 173
                   +  +v  ++ l++++ als+++l+++h  +  ++v+ +++++ +F++ +Y  G+ +lr+ +++ 
    CCD24798.1 676 GMSRVLPKIFLQAMSGALSNNSLTSQHFQHvcERVN-KNKLEYFFQQWVYGSGVPILRVTQRFN 738
                   34457777889999999*****99998777434555.669******************999875 PP

>> Peptidase_M1_N  Peptidase M1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.7   3.6e-06     0.011       4      53 ..      37      87 ..      34     200 .. 0.86
   2 !   13.7   0.2   1.8e-05     0.055      83     153 ..     199     269 ..     162     305 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.6e-06
                    EEEEEEEEETTTTEEEEEEEEEEEES.S-ECEEEEEESSEEEECEEEEECT CS
  Peptidase_M1_N  4 hYdldlkidlkektfkGsvtitlqlk.eatseivldakdlkiksvslsaev 53
                    h +++l+idl+++++kGs  i + +  ++ + i+ld+k+lki++v + ++ 
      CCD24798.1 37 HQKISLDIDLASHSIKGSTDIVIIPLvQNLDYISLDCKKLKINDVLIEKRR 87
                    7789*******************9999***************666555443 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.8e-05
                     TCEEEEEEEEEEE-BSSSSEEEEEEEEE.TSCEEEEEEEE-TTT.TGGGTS-B--STTSEBEEEEEEEEETTS CS
  Peptidase_M1_N  83 tskytLeieyegelndklaGlykstYtd.kgekkvvvvTqfeat.dARsafPCfDePsvKAtftisikapkee 153
                      +++t+ i+ye   n++ +G+   t+ + k    ++++T+ e    A++++PC+   + K+t++i+i++p + 
      CCD24798.1 199 FTPITIRIDYEV--NNPNTGVKFDTFLQdKPYLWNAYTTNAELCsTASYWMPCVNSLDEKSTWEIEINVPRKV 269
                     378899999977..*******9889988465567788999998779************************986 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8  15.8   7.6e-05      0.23     132     205 ..     275     410 ..     262     479 .. 0.40

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.6e-05
       BUD22 132 kkllgiek...kkkkkeeekkkkkkkkkkkkkkeeee...eeesdkeeesedsedeekeeseddeeeeeededdedaee.................... 204
                  k++g ++   +++++e+ k++ k k k ++++ e+    ++++d ee+++++++  +++++dd+++++++edd+++e+                    
  CCD24798.1 275 TKIIGQNDvisSNTNNEKTKSEHKIKLKLTSTEVEQGekqRKDEDLEEKNKKESN-IDDDHDDDDDDDDDEEDDDEDEDeqsrlendlsnpmnrdikvc 372
                 5666655565544444444444444444444444444222333333333333333.1111111111111111111111123345455543444444444 PP

       BUD22 205 .....................................d 205
                                                       
  CCD24798.1 373 cseystmvetthptdlskkvlsfqifnpvaphhigwaV 410
                 33333333333333333333333333333333333332 PP

>> CDC27  DNA polymerase subunit Cdc27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  12.9   0.00022      0.67     193     272 ..     278     355 ..     268     375 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00022
       CDC27 193 ekaekaasskaaslkkkasaksnimksffkakpaekkkkteakeqkveeeseeekekedkeleddsaaeeeeeeekstkk 272
                 + +++  ss+++++k+k   k +++    + ++ ek+ k e+ e+k ++es+  + ++d++ +dd++  e+++e++++++
  CCD24798.1 278 IGQNDVISSNTNNEKTKSEHKIKLKLTSTEVEQGEKQRKDEDLEEKNKKESNIDDDHDDDDDDDDDE--EDDDEDEDEQS 355
                 55667889999999*99999999999999999******************99999999999888887..55555555544 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  11.2   0.00084       2.5     125     166 ..     313     355 ..     277     472 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00084
       CDC45 125 aleeeeesdeede.....eeeeeddddeeeeeeeeedeedeeedeee 166
                 + +++e+ +e+++     +++++ddd    +++++e+++de+ede++
  CCD24798.1 313 KQRKDEDLEEKNKkesniDDDHDDDD----DDDDDEEDDDEDEDEQS 355
                 22222222111111111111111111....11111111111111111 PP

>> RPN2_C  26S proteasome regulatory subunit RPN2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  14.3    0.0074        22      31      99 ..     287     354 ..     284     370 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0074
                 S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG.--------------------------------- CS
      RPN2_C  31 eleekkekekekvatAvLSttakakarakkkekekeeeekeedkmdvdeekeekekkekekkekekeee 99 
                 +++++k+k+++k++    St   + ++++k+e+ + e++k+e+++d d+++++++++++e+++++++e+
  CCD24798.1 287 NTNNEKTKSEHKIKLKLTSTEVEQGEKQRKDEDLE-EKNKKESNIDDDHDDDDDDDDDEEDDDEDEDEQ 354
                 5778999999***********99999999999988.677888888888766666666655555554332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1346  (0.0750739); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:00.48
# Mc/sec: 9754.16
//
Query:       CCD24799.1  [L=764]
Description: hypothetical protein NDAI_0D04860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-40  138.0   0.3    2.8e-40  138.0   0.3    2.7  3  Creatinase_N_2   Creatinase/Prolidase N-terminal domain
    1.3e-37  129.5   0.0    1.9e-37  129.0   0.0    1.2  1  Peptidase_M24    Metallopeptidase family M24
    2.9e-21   75.3   0.7    2.9e-21   75.3   0.7    2.4  3  Peptidase_M24_C  C-terminal region of peptidase_M24
  ------ inclusion threshold ------
       0.22   11.1   1.2       0.81    9.2   0.1    2.4  3  TDH              Vibrio thermostable direct hemolysin


Domain annotation for each model (and alignments):
>> Creatinase_N_2  Creatinase/Prolidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.4       0.1   4.7e+02     104     159 ..     203     254 ..     173     256 .. 0.69
   2 !  138.0   0.3   6.4e-44   2.8e-40       3     161 .]     281     461 ..     280     461 .. 0.85
   3 ?   -2.5   0.0       1.1   4.7e+03     111     155 ..     479     499 ..     465     520 .. 0.57

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.1
                     -GGGH.HHHHHHHHHHH----EEE-TTSBHHHHHHH-GGGEEE-S-HHHHHHHC--H CS
  Creatinase_N_2 104 pyeev.vsdlkalasaskkkvlldpsktsyalasalkekkvveeespiallKavKNe 159
                     +  e+ ++++++   +++ k+ +dp+ +sy  + ++  +k++ +++ i++ K++KN+
      CCD24799.1 203 EAMEMaSNKMEKK--NDSIKIGIDPKLISYENVIQF--NKLI-QSKTIKINKSLKNQ 254
                     4333412233332..235788899999997775444..5544.56899*******97 PP

  == domain 2  score: 138.0 bits;  conditional E-value: 6.4e-44
                     --------EE--HHHHSS-HHHHHHHHHHHHHHT................T-SEEEE-SHHHHHHHTTEE--SBTTB----EEEEE.....ES.S CS
  Creatinase_N_2   3 ParpkepvfvlpeeyaGesvaeKlerlrkelkkk................kadalvlsaldeiAWllNlRGsDipynPvflsyaiv.....tkde 76 
                     P+r ++++ +l+e+y+Ges+++K++rl ++l +                  ++ +++ aldei+WllNlRGsDi+ynPvf++y+++     ++d+
      CCD24799.1 281 PERRSNELLLLDEKYHGESFNSKRKRLFEKLPSTtsssssssssssssssFDRSFLVVALDEICWLLNLRGSDIEYNPVFYAYLYLnesndDDDD 375
                     9999***************************75445566666667666667899********************************776553478 PP

                     -EEEEE-GGG-..-HHHHHHHTTEEEE-GGGHHHHHHHHHHHH----EEE-TTSBHHHHHHH-..GGGEEE-..S-HHHHHHHC--HHH CS
  Creatinase_N_2  77 katLFvdeeklteevkehleengveikpyeevvsdlkalasaskkkvlldpsktsyalasalk..ekkvvee..espiallKavKNevE 161
                     +++LF+d+  ++++++ +++en++ ikpy++++s+l++l+++ +++++l p+++s++++++++  +++++ +  +spi++lK++KN +E
      CCD24799.1 376 QTILFMDNP-INDKIEIYFKENNIIIKPYNDIWSYLENLTTS-TSTIFL-PDTLSWQIIRKIQknQNSLTYKliHSPIDILKSIKNMTE 461
                     9******77.8999*************************965.466666.59**********8543333333668***********998 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.1
                     HHHHHHHHH----EEE-TTSBHHHHHHH-GGGEEE-S-HHHHHHH CS
  Creatinase_N_2 111 dlkalasaskkkvlldpsktsyalasalkekkvveeespiallKa 155
                     + + l                        e+k+++++s i+ +Ka
      CCD24799.1 479 YFAWL------------------------ENKLINKQSLIDEFKA 499
                     22222........................4555555555555555 PP

>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.0   4.2e-41   1.9e-37      29     208 ..     498     682 ..     463     683 .. 0.87

  Alignments for each domain:
  == domain 1  score: 129.0 bits;  conditional E-value: 4.2e-41
                    HHHHHHHHHHHHHTTTCEESSSSEEEEGGGGGSTTTBC...SSSB--TTEEEEEEEEEEETTEEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M24  29 elaaeieattlkrhgarglafppivasgenaavlhytp...ndrvlkegdlvlidagaeydgyasDitrTvlvGkftpeqrelyeavleaqeaaik 121
                    ++ +++ + +  ++++ g +f++i ++g+naa++hy+p   n+  + + +++l+d ga++ + ++DitrT+++ ++t+eq ++y++vl++  a+ +
     CCD24799.1 498 KASEKLIEIRKTQKHFMGNSFQTISSTGANAAIIHYSPsmeNSSIIDPSKIYLCDTGAQFLEGTTDITRTLHLMEPTNEQIKNYTLVLKGNLAIER 593
                    4444444455567789**********************76556669*************************9999********************* PP

                    C-ST.T.SBHHHHHHHHHHHHHHTTBCCGBSSCSEEEES..SSSSEEEEE.ESSSTT.CSSB--TTBEEEEEEEEEEETTTEEEEEBEEEEEE CS
  Peptidase_M24 122 avkp.G.vtlseidaaarevlesaglakffphglGHgvG..levhdegps.vsresn.dgrkleeGmvftiEpgiyfapgeggvriedtvlvt 208
                    + +p G +t+ +ida ar++l++ gl  +++hg+GHg+G  l+vh++ p+ +  +++  + +l +G+++++Epg+y  +ge+g+rie++++v+
     CCD24799.1 594 LTFPeGtITGYQIDALARQFLWNDGL--DYRHGTGHGIGsfLNVHEG-PIgIGFKPSlINFPLMKGNIISNEPGFY-KDGEYGIRIENDLIVK 682
                    ****87347*************99**..88*********999***98.9855434447899***************.78************97 PP

>> Peptidase_M24_C  C-terminal region of peptidase_M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.8   1.2e+04      10      20 ..     262     272 ..     260     272 .. 0.88
   2 ?   -3.0   0.0       1.7   7.8e+03      32      43 ..     464     475 ..     460     486 .. 0.61
   3 !   75.3   0.7   6.5e-25   2.9e-21       1      63 []     702     764 .]     702     764 .] 0.96

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.8
                      -----STT--G CS
  Peptidase_M24_C  10 lvPidrklIdv 20 
                      lvP + +l+d+
       CCD24799.1 262 LVPVENNLVDK 272
                      89******995 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.7
                      HHHHHHHHHHHH CS
  Peptidase_M24_C  32 naYhakvrekls 43 
                      na++a+v ++ls
       CCD24799.1 464 NAHNAQVKDSLS 475
                      677777777776 PP

  == domain 3  score: 75.3 bits;  conditional E-value: 6.5e-25
                      -EEEEEES------STT--GGGS-HHHHHHHHHHHHHHHHHHHHHHHHT-H.HHHHHHHT--- CS
  Peptidase_M24_C   1 kfleFetlTlvPidrklIdvslLtpeEiawLnaYhakvreklsplLeeeneeleWLkraTrpl 63 
                      kfl+Fe++TlvP++rklIdv+lLt+eE+  Ln+Y+++++++l + L+ ++ + +WLkr+T+ +
       CCD24799.1 702 KFLTFENITLVPYCRKLIDVNLLTKEEKSQLNSYNKRIWDNLVQFLQPQSIAFKWLKRETATI 764
                      7*********************************************9998669*******976 PP

>> TDH  Vibrio thermostable direct hemolysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00018      0.81      23      94 ..     377     450 ..     374     481 .. 0.78
   2 ?   -3.9   0.0         2   8.8e+03     122     134 ..     545     557 ..     537     559 .. 0.75
   3 ?   -1.4   0.1      0.33   1.5e+03      18      49 ..     679     714 ..     675     737 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00018
                 GGGGSSS---EEEEEEEESSEEEE---SS-SS..EEEEEEEEESSEEEEEEEEETTEEEEEEEEEEEETTEEEE CS
         TDH  23 ttfntqapvnvkvsdfwtnrnvkrkpykdvyg..qsvfttsgtkwltsymtvnindkdytmaavsgyksghsav 94 
                 t +  + p+n k+  ++ + n+  kpy+d++   + + t++ t +l   ++ +i  k         yk  hs +
  CCD24799.1 377 TILFMDNPINDKIEIYFKENNIIIKPYNDIWSylENLTTSTSTIFLPDTLSWQIIRKIQKNQNSLTYKLIHSPI 450
                 5556789**********************966215666666788998888888888887777777888888766 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2
                 SEEEEEEE-SS-E CS
         TDH 122 pskmyldetpeyf 134
                 psk+yl +t   f
  CCD24799.1 545 PSKIYLCDTGAQF 557
                 9*****9998777 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.33
                 EEEEEGGGGSSS---EEEEEE....EESSEEEE--- CS
         TDH  18 fvvrdttfntqapvnvkvsdf....wtnrnvkrkpy 49 
                 ++v+d+ f  +   n +v +f     t  n+   py
  CCD24799.1 679 LIVKDACFSHNNNNNTNVGNFgqkfLTFENITLVPY 714
                 689999999999999888765111166677777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1137  (0.0634168); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5269.20
//
Query:       CCD24800.1  [L=878]
Description: hypothetical protein NDAI_0D04870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-05   23.2   0.0        0.2   11.5   0.0    3.8  3  KH_1      KH domain


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0013        23       5      32 ..     435     462 ..     431     475 .. 0.89
   2 !   11.5   0.0   1.1e-05       0.2       2      36 ..     517     551 ..     516     562 .. 0.91
   3 ?    1.6   0.0     0.013   2.4e+02      22      64 ..     623     676 ..     621     678 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0013
                 EEGGGHHHHHHTGGGHHHHHHHHHHT-E CS
        KH_1   5 lvPsslvgriIGkgGsnIkeIreetgak 32 
                 +++ s++ +i Gk++ ++ +I+e+ +++
  CCD24800.1 435 EIHPSFHEFISGKKNGKLIKIMEDNNTN 462
                 7899*******************87875 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 1.1e-05
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEE CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvp 36 
                 +++ +P  ++  +IG gGs I+  +++ ++ I++ 
  CCD24800.1 517 ESFFIPEIYHKPVIGSGGSLIQTTMRKNNVFIQFS 551
                 57899999******************88*****96 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.013
                 HHHHHHHHT-EEEEE.....S.STT.......T.-EEEEEE.SHHHHHHHHHHH CS
        KH_1  22 IkeIreetgakIkvp.....k.sedeg....sderevtisG.speavekAkeli 64 
                 I +++++ ++ I +p     + ++d++    ++++++ti+  ++++   A +++
  CCD24800.1 623 IGKLEKKFNVFIGFPnillhNcGDDQDinnyHHNETLTIKAnDENQLYLATNEL 676
                 66788878999999966666555555588999********98999998887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (878 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       965  (0.0538234); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 6115.95
//
Query:       CCD24801.1  [L=258]
Description: hypothetical protein NDAI_0D04880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1659  (0.0925317); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1885.81
//
Query:       CCD24802.1  [L=870]
Description: hypothetical protein NDAI_0D04890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-93  309.7   0.0    8.5e-47  158.9   0.0    2.5  2  AAA              ATPase family associated with various cellul
    7.3e-22   76.9   0.1    6.1e-10   38.8   0.0    2.8  2  AAA_lid_3        AAA+ lid domain
    1.3e-14   54.2   0.0    2.4e-07   30.6   0.0    2.6  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.9e-13   51.2   0.8    7.4e-05   23.2   0.0    4.1  2  AAA_16           AAA ATPase domain
    1.2e-10   41.8   0.0    0.00095   19.3   0.0    2.8  2  AAA_2            AAA domain (Cdc48 subfamily)
    2.2e-10   41.0   0.9       0.02   15.2   0.0    5.0  3  AAA_22           AAA domain
    2.7e-10   40.6   0.0    0.00015   21.9   0.0    3.1  2  AAA_33           AAA domain
    1.5e-09   38.0   0.3      0.001   19.1   0.1    3.5  2  AAA_5            AAA domain (dynein-related subfamily)
    3.4e-09   36.6   0.9    7.4e-05   22.7   0.1    3.5  3  Vps4_C           Vps4 C terminal oligomerisation domain
    7.9e-09   35.2   0.0    0.00033   20.0   0.0    2.5  2  TIP49            TIP49 P-loop domain
    1.3e-07   31.8   0.0      0.024   14.7   0.0    2.9  2  AAA_14           AAA domain
    1.6e-07   32.0   2.5     0.0016   19.0   0.0    3.6  2  AAA_18           AAA domain
    3.3e-07   30.7   0.0       0.03   14.7   0.0    3.0  2  RNA_helicase     RNA helicase
    1.6e-06   27.6   0.0      0.047   13.0   0.0    2.6  2  Zeta_toxin       Zeta toxin
    3.1e-06   27.1   0.1      0.048   13.4   0.0    2.6  2  IstB_IS21        IstB-like ATP binding protein
    3.9e-06   26.4   0.3      0.053   12.9   0.0    2.5  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    5.8e-06   26.4   0.0      0.025   14.5   0.0    2.7  2  Rad17            Rad17 P-loop domain
    5.9e-06   26.6   0.0      0.066   13.4   0.0    2.6  2  AAA_28           AAA domain
      7e-06   26.6   7.3      0.014   15.9   0.0    4.0  2  ABC_tran         ABC transporter
      7e-06   25.9   0.0      0.053   13.4   0.0    2.8  2  AAA_3            ATPase family associated with various cellul
    1.9e-05   24.9   0.0     0.0012   19.0   0.0    2.8  2  Cytidylate_kin2  Cytidylate kinase-like family
    7.3e-05   22.7   0.1       0.51   10.2   0.0    3.1  2  NACHT            NACHT domain
    9.4e-05   22.9   2.3       0.13   12.7   0.1    3.8  2  AAA_17           AAA domain
    0.00011   22.2   0.0       0.73    9.9   0.0    2.4  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0002   20.9   0.0       0.45   10.0   0.0    2.6  2  AAA_7            P-loop containing dynein motor region
    0.00026   20.8   0.3        1.1    8.9   0.0    3.1  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    0.00026   21.1   0.8        0.2   11.7   0.0    3.0  2  SKI              Shikimate kinase
    0.00027   20.6   0.4        1.8    8.1   0.0    3.8  4  AAA_25           AAA domain
    0.00031   20.0   0.0       0.15   11.2   0.0    2.8  2  DUF815           Protein of unknown function (DUF815)
    0.00038   20.2   0.0       0.29   10.8   0.0    2.8  3  Sigma54_activat  Sigma-54 interaction domain
    0.00048   19.9   0.4       0.91    9.2   0.0    3.1  2  AAA_24           AAA domain
    0.00094   18.4   0.0        1.1    8.4   0.0    3.1  3  NB-ARC           NB-ARC domain
     0.0013   18.6   0.0      0.031   14.1   0.0    2.5  2  CPT              Chloramphenicol phosphotransferase-like prot
     0.0014   18.0   0.0        1.7    7.9   0.0    3.3  3  ATPase           KaiC
     0.0014   18.7   0.0        2.9    8.0   0.0    2.5  2  Sigma54_activ_2  Sigma-54 interaction domain
     0.0026   17.7   0.0        2.2    8.1   0.0    3.3  3  ATPase_2         ATPase domain predominantly from Archaea
      0.004   16.3   2.2          2    7.4   0.0    2.9  2  Parvo_NS1        Parvovirus non-structural protein NS1
  ------ inclusion threshold ------
      0.018   15.4   0.1        5.3    7.4   0.0    2.7  2  AAA_19           AAA domain
      0.018   14.8   0.0        8.2    6.2   0.0    2.6  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
      0.023   14.2   0.1          3    7.2   0.0    2.4  2  PhoH             PhoH-like protein
      0.043   13.7   0.0         13    5.7   0.0    2.6  2  NTPase_1         NTPase
      0.049   13.4   4.5        1.1    9.0   0.0    3.8  4  Cytidylate_kin   Cytidylate kinase
       0.13   12.8   0.0       0.51   10.9   0.0    2.0  1  NifW             Nitrogen fixation protein NifW
       0.21   11.7   1.9        2.8    8.0   0.0    3.1  2  MMR_HSR1         50S ribosome-binding GTPase
       0.27   11.5  10.2       0.76   10.0   0.0    3.9  4  Hydin_ADK        Hydin Adenylate kinase-like domain
       0.42   10.3   0.0       0.62    9.8   0.0    4.3  3  AAA_11           AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.0   3.9e-46   1.5e-43       1     129 [.     261     393 ..     261     396 .. 0.96
   2 !  158.9   0.0   2.2e-49   8.5e-47       1     131 [.     603     732 ..     603     733 .. 0.98

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 3.9e-46
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkk 98 
                 vll+GppG+GKT++a+a+a el+v+f++is+++++s + gesekkirelf+eak+ a p+ +f+DEida++++r  g+++e e+r+v+qLlt +d+++ 
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELKVPFISISAPSVVSGMSGESEKKIRELFEEAKALA-PCLMFFDEIDAITPKRdGGAQREMERRIVAQLLTSMDELTM 358
                 79******************************************************9.****************88889*****************999 PP

                 S...SSTEEEEEEESSGGGSTHHHHS.TTSSEEEE CS
         AAA  99 k...eskvivigatnrpdkldpallr.gRfdrkie 129
                 +    ++vivigatnrpd+ld al+r gRfdr+i 
  CCD24802.1 359 EqtnGKPVIVIGATNRPDSLDAALRRaGRFDREIC 393
                 8777677*************************996 PP

  == domain 2  score: 158.9 bits;  conditional E-value: 2.2e-49
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 vll+GppG+GKTllakava+e+ ++f++i+g+ell+kyvgese+ ir++f++a+++  p+++f+DE+dal+++r++s se+++rvvn+Llteldg++++
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRARASV-PCVIFFDELDALVPRRDTSLSESSSRVVNTLLTELDGLNDR 700
                 79*****************************************************98.****************************************8 PP

                 SSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA 100 eskvivigatnrpdkldpallr.gRfdrkieie 131
                 ++ ++v+gatnrpd++dpa+lr gR+d+ ++ie
  CCD24802.1 701 RG-IFVVGATNRPDMIDPAMLRpGRLDKTLFIE 732
                 66.**************************9997 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0     2e-11   7.8e-09       1      38 [.     418     455 ..     418     460 .. 0.92
   2 !   38.8   0.0   1.6e-12   6.1e-10       1      41 [.     757     805 ..     757     833 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 2e-11
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikei 38 
                 ++d+ +LA++T+G++GADl++l  +A+ +A++r ++++
  CCD24802.1 418 SIDFLKLAKLTPGFVGADLKSLTTAAGTCAIKRIFETY 455
                 58*******************************99875 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 1.6e-12
   AAA_lid_3   1 dvdlkeLAe..rTeGySGADlaalcreAallAlrr......gikeitme 41 
                 dv+++e+ +  r+ ++SGADlaal+re++ lAl+r       i+++++ 
  CCD24802.1 757 DVQFSEIIKdeRCRNFSGADLAALVRESSVLALKRsffkndEIQSVGEN 805
                 89*********************************55543323345444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   6.1e-10   2.4e-07      35     151 ..     260     384 ..     253     392 .. 0.84
   2 !   20.6   0.0   7.7e-07    0.0003      35      70 ..     602     637 ..     577     679 .. 0.83

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 6.1e-10
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvl......ekagdlaalltnleekd..vlfideihrlsraveevlysamedfrldivigkGpsars 125
                  vll+GpPG Gkt++a+ +a el+v + + s+P +      e ++ +  l+ + ++    ++f dei  ++++ +      me   +  ++ +    ++
  CCD24802.1 260 GVLLHGPPGCGKTSIANALAGELKVPFISISAPSVvsgmsgESEKKIRELFEEAKALApcLMFFDEIDAITPKRDGGAQREMERRIVAQLLTSMDELTM 358
                 69*****************************9987444333445566666666554323389************************************* PP

      RuvB_N 126 ikldlpkftlvgattragllssPlrd 151
                  + + ++  ++gat r   l + lr 
  CCD24802.1 359 EQTNGKPVIVIGATNRPDSLDAALRR 384
                 ********************999984 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 7.7e-07
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvle 70 
                  vll GpPG Gkt lak +a+e  +++ +  gP l 
  CCD24802.1 602 GVLLWGPPGCGKTLLAKAVANESRANFISIKGPELL 637
                 69***************************9999874 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   4.3e-07   0.00017      24      63 ..     258     294 ..     249     384 .. 0.61
   2 !   23.2   0.0   1.9e-07   7.4e-05      15      88 ..     591     667 ..     590     706 .. 0.59

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 4.3e-07
      AAA_16  24 pelvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 p+ vll+G++G+GK+s++++l+ +l+     f++  + + 
  CCD24802.1 258 PRGVLLHGPPGCGKTSIANALAGELKVP---FISISAPSV 294
                 499******************9988866...444444444 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 1.9e-07
      AAA_16  15 alervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql......esaipysa.laqalareellrqllde 88 
                 ++e+v  + p  vll G++G+GK+ l+++++++ +++   f++ k  +l      es+++  + +++a  ++  +    de
  CCD24802.1 591 LYEKVGISAPAGVLLWGPPGCGKTLLAKAVANESRAN---FISIKGPELlnkyvgESERAIRQvFTRAR-ASVPCVIFFDE 667
                 6889999999*********************988877...87777777733333322233222233333.22333333333 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.4e-06   0.00095       6     116 ..     261     366 ..     257     410 .. 0.84
   2 !   19.3   0.0   2.5e-06   0.00099       6     105 ..     603     696 ..     600     705 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.4e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----..---------HHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk..essgadvSregVqrdLL 100
                 +ll gp g+Gkt +a+ala  l+v    ++i + a ++    + e+e+ + +l  ++++          ++DEid i+pk  + +++++ r  V   LL
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELKV----PFISISAPSVVSgmSGESEKKIRELFEEAKALAP----CLMFFDEIDAITPKrdGGAQREMERRIV-AQLL 350
                 6889*******************8....9999999999886677888999999999888874....59************97777778777655.5577 PP

                 HHHH--EE-------E CS
       AAA_2 101 qileggtltdkqgrkv 116
                   +++ t+++ +g++v
  CCD24802.1 351 TSMDELTMEQTNGKPV 366
                 7789999998888544 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 2.5e-06
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS...EEEEETGGG-------------HHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG...ivllDEidKihpkessgadvSregVqrdLLq 101
                 +ll gp g+Gkt+laka+a+  ++    ++i +   ell      ++v + + a      ++      ++++DE+d   p++ ++   S+  V++ LL 
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANESRA----NFISIKGPELLN-----KYVGESERAIRQVFTRARASvpcVIFFDELDALVPRRDTSLSESSSRVVNTLLT 692
                 6889****************9996....***********9.....55555554444444444444466************9777777788899999998 PP

                 HHH- CS
       AAA_2 102 ileg 105
                  l+g
  CCD24802.1 693 ELDG 696
                 7776 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.4e-05     0.025       8      51 ..     261     295 ..     256     369 .. 0.78
   2 !   15.2   0.0   5.1e-05      0.02       9      46 ..     604     632 ..     600     715 .. 0.78
   3 ?    3.1   0.1      0.27   1.1e+02      40     120 ..     726     821 ..     684     829 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.4e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst 51 
                 ++++G++G+GKT  ++ l+ +l         +++++++ +ps  
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGEL---------KVPFISISAPSVV 295
                 689******************9.........7777766666544 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 5.1e-05
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvt 46 
                 +++G++G+GKT+l++ ++++          r+ +++++
  CCD24802.1 604 LLWGPPGCGKTLLAKAVANES---------RANFISIK 632
                 799****************97.........44444433 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.27
      AAA_22  40 pevvfvtlpsstsskdllrellralglelka.............erlsseellealeqalraravielliiDEaqhlrs....eealeeLrsllnlsr 120
                 ++++f++lp+  +  d+ + l+r  g +l +             ++ s  +l +++++ +  + +++++  DE+q +      ++ +e+L+  +n ++
  CCD24802.1 726 DKTLFIELPNYDEKLDIITTLARSNGTPLADdvqfseiikdercRNFSGADLAALVRESSVLALKRSFFKNDEIQSV-GennlDKEFEDLSVGMN-KH 821
                 6789***********************99999999999987777666666666666666555555899999999999.44467888888877777.44 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.9e-07   0.00015       2      86 ..     261     379 ..     261     413 .. 0.65
   2 !   15.1   0.0   4.8e-05     0.019       2      46 ..     603     649 ..     603     702 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.9e-07
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt.................................dytrvldrlyqilnelark 65 
                 vll+G+pG+GK+  a  l+ +l+  ++ +s +++ + + g+ +++++                                    r+  +l   + + ++ 
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELKvpFISISAPSVVSGMSGESEKKIRelfeeakalapclmffdeidaitpkrdggaqreMERRIVAQLLTSM-DELTM 358
                 799********************99999*****999999877776665566666666666666666666665555544432223444455555.33335 PP

      AAA_33  66 alsagrnvildatnlsrrera 86 
                  ++ g++vi+     +++  +
  CCD24802.1 359 EQTNGKPVIVIGATNRPDSLD 379
                 566677766644444444444 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 4.8e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqskt 46 
                 vll G+pG+GK+ la+ ++++    ++ +  ++l+++++g+ ++ ++
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANESRanFISIKGPELLNKYVGESERAIR 649
                 6899***************9999888889999999988886655544 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   2.6e-06     0.001       1     136 [.     260     384 ..     260     385 .. 0.79
   2 !   14.4   0.0   7.1e-05     0.028       1      33 [.     602     634 ..     602     713 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 2.6e-06
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE.. CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrll.. 95 
                 +vlL GppG+gK+++a  la  l+ ++  +  ++      ++ +++   g+ + +  +l ++a+   ++++++DE++ + ++  +  ++ +e+r +   
  CCD24802.1 260 GVLLHGPPGCGKTSIANALAGELKVPFISISAPS------VVSGMS---GESEKKIRELFEEAKalAPCLMFFDEIDAITPKRDGGAQREMERRIVAql 349
                 59*********************99998887776......777777...67777778888888888999********9999999999999999987611 PP

                 ..-SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  96 leeggelvkaknddllerfrviatanpldrslnelspalrs 136
                 l +++el+ ++ +   +++ vi+++n++d    +l++alr+
  CCD24802.1 350 LTSMDELTMEQTN--GKPVIVIGATNRPD----SLDAALRR 384
                 2333444433333..24499999999999....88999886 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 7.1e-05
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE-- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqlt 33 
                 +vlL GppG+gK+ la+ +a   ++++  + ++
  CCD24802.1 602 GVLLWGPPGCGKTLLAKAVANESRANFISIKGP 634
                 59***************9998777776666555 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       3.7   1.4e+03      31      48 ..     157     174 ..     146     177 .. 0.90
   2 !    9.9   0.0    0.0018      0.72      19      45 ..     526     552 ..     516     557 .. 0.87
   3 !   22.7   0.1   1.9e-07   7.4e-05      26      61 .]     823     858 ..     809     858 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 3.7
      Vps4_C  31 lkDflkalkkarptVske 48 
                  +D+ k++  + +tV +e
  CCD24802.1 157 TNDMNKSVTAQWSTVKQE 174
                 68*************987 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0018
      Vps4_C  19 ipsdkllePpvtlkDflkalkkarptV 45 
                 +++++l +  ++++Dflkal + +pt 
  CCD24802.1 526 LNTEQLGQLAIKYEDFLKALPTIQPTA 552
                 568999999****************96 PP

  == domain 3  score: 22.7 bits;  conditional E-value: 1.9e-07
      Vps4_C  26 ePpvtlkDflkalkkarptVskeDLekheeFTkefG 61 
                 +  vt++Df kal k +p+Vs++D +k+++  k++G
  CCD24802.1 823 QIRVTMNDFHKALVKIKPSVSDKDRAKYDRLNKKMG 858
                 558*********************999988766665 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   8.5e-07   0.00033      51      94 ..     259     300 ..     255     316 .. 0.86
   2 !   12.4   0.0   0.00017     0.066      51     105 ..     601     654 ..     590     659 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 8.5e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevk 94 
                 r+vLl Gp+g Gkt++a a++ el   vpf+++s+  v s    
  CCD24802.1 259 RGVLLHGPPGCGKTSIANALAGELK--VPFISISAPSVVSGMSG 300
                 89**********************6..********999886544 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00017
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkkte.vltqalrk 105
                  +vLl Gp+g Gkt la a+++e      f++++g e+    v  +e ++ q + +
  CCD24802.1 601 AGVLLWGPPGCGKTLLAKAVANES--RANFISIKGPELLNKYVGESErAIRQVFTR 654
                 579*******************95..589*********999998887456666655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   6.2e-05     0.024       5      76 ..     261     329 ..     258     390 .. 0.66
   2 !   13.7   0.0   0.00012     0.048       5      76 ..     603     671 ..     601     722 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.2e-05
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderd..kkladpe.kllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT +++ l+ el      + +i++  ++    ++ ++e k+ el+ e  k+    ++f+DEi  +
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELK-----VPFISISAPSVvsGMSGESEkKIRELFEEA-KALAPCLMFFDEIDAI 329
                 7899***************8888.....444444444442233333331455555554.4557899******988 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 0.00012
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT l+k +++e+     +++ i+  +  +k   ++e+ ++ ++ +++++   ++f+DE   +
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANESR---ANFISIKGPELLNKYVGESERAIRQVFTRARASVPCVIFFDELDAL 671
                 5788999************9988...8888888888777776666655555555544457889*****8766 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.2e-06    0.0016       1     105 [.     261     400 ..     261     416 .. 0.75
   2 !   11.0   0.0    0.0012      0.47       1      22 [.     603     624 ..     603     656 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.2e-06
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf.....................gvnlrdvakenglllevdpe........aldeskrldedkldklldaleenssa 70 
                 +ll G+pG+GKt++a++L+ +l++                      ++l + ak   ++l++++e        +   ++++++  +++ll+ ++e    
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELKVpfisisapsvvsgmsgesekkIRELFEEAKALAPCLMFFDEidaitpkrDGGAQREMERRIVAQLLTSMDELTME 359
                 7899**************999988889999999999999999888777777777778888888888888876666667777777777777777777668 PP

      AAA_18  71 leegknlvidghlaeleseaakdikk......vvLtaspee 105
                 +++gk++++ g  + + s +a  +        ++L +++e+
  CCD24802.1 360 QTNGKPVIVIGATNRPDSLDAALRRAgrfdreICLNVPNEV 400
                 89999997755544443322222222246666999998886 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0012
      AAA_18   1 IlltGtpGvGKttlakeLskrl 22 
                 +ll G+pG+GKt lak+++++ 
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANES 624
                 7899**************7764 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.6e-05      0.03       1      36 [.     261     296 ..     261     312 .. 0.81
   2 !   12.6   0.0   0.00035      0.14       1      25 [.     603     627 ..     603     666 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.6e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvys 36 
                   ++l+Gp+g+GK+++a+ La +l   + +++++sv+s
    CCD24802.1 261 VLLHGPPGCGKTSIANALAGELKVPFISISAPSVVS 296
                   689****************99987666666666665 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00035
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkk 25 
                   ++l+Gp+g+GK++lak +a++   +
    CCD24802.1 603 VLLWGPPGCGKTLLAKAVANESRAN 627
                   679**************88876544 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00032      0.12      14      43 ..     256     283 ..     249     293 .. 0.84
   2 !   13.0   0.0   0.00012     0.047      14      51 ..     598     633 ..     590     640 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00032
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerq 43 
                 e P  +ll G pG+GK+++a++l+ el  +
  CCD24802.1 256 EPPRGVLLHGPPGCGKTSIANALAGEL--K 283
                 668899*****************9998..4 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00012
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerqgnvvrldp 51 
                 + P+ +ll G pG+GK+ la+++++e   + n++ +++
  CCD24802.1 598 SAPAGVLLWGPPGCGKTLLAKAVANES--RANFISIKG 633
                 57999*********************8..899999876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0009      0.35      48      70 ..     259     281 ..     251     294 .. 0.88
   2 !   13.4   0.0   0.00012     0.048      44      71 ..     597     624 ..     583     638 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0009
   IstB_IS21  48 enivllGpsGvGKshlaialgve 70 
                  +++l Gp+G GK+ +a al+ e
  CCD24802.1 259 RGVLLHGPPGCGKTSIANALAGE 281
                 5799****************865 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00012
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgvea 71 
                 i++ ++++l Gp+G GK+ la a++ e 
  CCD24802.1 597 ISAPAGVLLWGPPGCGKTLLAKAVANES 624
                 5667899****************99876 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00059      0.23      25      44 ..     261     280 ..     257     305 .. 0.91
   2 !   12.9   0.0   0.00014     0.053      24      42 ..     602     620 ..     591     623 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00059
  Mg_chelatase  25 lllvGppGsGKtmlakrlps 44 
                   +ll GppG+GKt +a++l++
    CCD24802.1 261 VLLHGPPGCGKTSIANALAG 280
                   79**************9976 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 0.00014
  Mg_chelatase  24 nlllvGppGsGKtmlakrl 42 
                    +ll GppG+GKt+lak++
    CCD24802.1 602 GVLLWGPPGCGKTLLAKAV 620
                   589*************987 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   6.4e-05     0.025      48     112 ..     261     326 ..     252     339 .. 0.84
   2 !    8.6   0.0    0.0042       1.6      48      82 ..     603     637 ..     597     676 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.4e-05
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklrewlnpvslkepdn.qksdfkgltekesrflsqiesfkel 112
                 +L+ GP+GCgk+ + + L+ el + ++  + p  +   +   ++ ++ l+e  + + + +  f e+
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELKVPFISISAPSVVSGMSGeSEKKIRELFEEAKALAPCLMFFDEI 326
                 699**********************99999998877666547778888888888888877777776 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0042
       Rad17  48 LLisGPsGCgkstvvkvLskelgiklrewlnpvsl 82 
                 +L+ GP+GCgk+   k ++ e   +++    p +l
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANESRANFISIKGPELL 637
                 5889*********9999999988777766666554 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00017     0.066       2      37 ..     261     297 ..     260     324 .. 0.74
   2 !   10.5   0.0    0.0013      0.52       2      35 ..     603     641 ..     602     659 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00017
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvvpEaareilee 37 
                 + + G++++GKT++++aLa + ++p +  +a  +++ 
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGElKVPFISISAPSVVSG 297
                 6799***************655888776555555555 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0013
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvv..pEaareil 35 
                 + + G++++GKT l++a a++   ++  +  pE   +++
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANEsraNFISIkgPELLNKYV 641
                 6789***************66445433334666666665 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.6e-05     0.014       5      70 ..     252     316 ..     250     388 .. 0.71
   2 !   11.7   0.0   0.00073      0.29       9      51 ..     598     638 ..     594     700 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.6e-05
                 EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
    ABC_tran   5 slklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pql 70 
                 s  +++ + v + G+ G+GK++++++lag+lk     i +   ++ +    +++k+i+ l++e + l
  CCD24802.1 252 STGVEPPRGVLLHGPPGCGKTSIANALAGELKVPF--ISISAPSVVSGMSGESEKKIRELFEEaKAL 316
                 56677888899*******************98643..333444444445666666666666664445 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00073
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke 51 
                 ++   v + G+ G+GK+ L+k++a++++     i ++g +l +
  CCD24802.1 598 SAPAGVLLWGPPGCGKTLLAKAVANESRA--NFISIKGPELLN 638
                 555668899***************99874..555556655555 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00014     0.053       2      93 ..     261     348 ..     260     379 .. 0.75
   2 !    9.6   0.0    0.0021       0.8       2      85 ..     603     682 ..     602     726 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 0.00014
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeeke.kefefkkGpvfanllladeinrappktqsalleameerqvtv 93 
                 vll+g PG +kt +++ala  l++ f  i       Ps + G++  +ek+ +e+  ++ ++   l++ dei+  +pk +      me r v+ 
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELKVPFISIS-----APSVVSGMSGESEKKiRELFEEAKALAPCLMFFDEIDAITPKRDGGAQREMERRIVAQ 348
                 89*******************998886665.....588888888777777255544455555667789********99999888888776653 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0021
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanllladeinrappktqsallea 85 
                 vll g PG +ktll+ka+a+   ++f  i+  p+ll   + G +  e++ +++ +++ + +  +++ de++   p+ +++l e+
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANESRANFISIK-GPELLNKYV-GES--ERAIRQVFTRARASVPCVIFFDELDALVPRRDTSLSES 682
                 7999*******************9999887.577776544.433..22223333333333344666666666666666666665 PP

>> Cytidylate_kin2  Cytidylate kinase-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.1e-06    0.0012       8      61 ..     267     321 ..     262     371 .. 0.69
   2 ?    2.4   0.0      0.39   1.5e+02       8      50 ..     609     651 ..     606     696 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.1e-06
  Cytidylate_kin2   8 yGsgGetigeaLAekLglpfydreiieevakelglseeev.eevdersrlssfls 61 
                       G+g++ i+ aLA +L++pf++   +  v+  +g se+++ e ++e+++l+  l 
       CCD24802.1 267 PGCGKTSIANALAGELKVPFISISAPSVVSGMSGESEKKIrELFEEAKALAPCLM 321
                      6***************************************888888544443332 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.39
  Cytidylate_kin2   8 yGsgGetigeaLAekLglpfydreiieevakelglseeeveev 50 
                       G+g++ +++a+A++ + +f++ + +e + k  g se  +++v
       CCD24802.1 609 PGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQV 651
                      59*************9999999888888777777777777554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0013      0.51       3      25 ..     261     283 ..     259     288 .. 0.89
   2 !    8.8   0.0    0.0036       1.4       3      23 ..     603     623 ..     602     628 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0013
                 EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawa 25 
                 v+l+G++G+GKT  +  la +++
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELK 283
                 89***************998886 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0036
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                 v+l G++G+GKT L++ +a +
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANE 623
                 6889************99876 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   0.00033      0.13       2      27 ..     265     290 ..     264     418 .. 0.92
   2 ?    7.4   0.0     0.015       5.8       2      25 ..     607     630 ..     606     656 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00033
                 E-TTSSHHHHHHHHHHHHTEEEEEHH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsaG 27 
                 G+PG+GK+ +++ l+ +++++++s +
  CCD24802.1 265 GPPGCGKTSIANALAGELKVPFISIS 290
                 9*****************99999865 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.015
                 E-TTSSHHHHHHHHHHHHTEEEEE CS
      AAA_17   2 GgPGsGKgtqceklvekygfthls 25 
                 G+PG+GK+ +++ ++ +    ++s
  CCD24802.1 607 GPPGCGKTLLAKAVANESRANFIS 630
                 9**********9999887555555 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0021       0.8      22      52 ..     261     293 ..     228     296 .. 0.81
   2 !    9.9   0.0    0.0019      0.73      20      59 ..     601     640 ..     579     651 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0021
                 EEEEESTTSSHHHHHHHHHHHTT--..----TT CS
        TsaE  22 ilLeGdLGaGKTtlvrglakalgve..evkSPT 52 
                 +lL+G+ G+GKT ++ +la +l+v   +++ P+
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELKVPfiSISAPS 293
                 9*********************99877888775 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0019
                 EEEEEEESTTSSHHHHHHHHHHHTT--..----TTTTSEEEE CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgve..evkSPTFtlveeY 59 
                 + +lL G+ G+GKT l++++a++   +  ++k P   l+++Y
  CCD24802.1 601 AGVLLWGPPGCGKTLLAKAVANESRANfiSIKGP--ELLNKY 640
                 3499******************998887778877..566666 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0012      0.45      29      58 ..     254     283 ..     246     338 .. 0.81
   2 !    8.0   0.0    0.0046       1.8      34      61 ..     601     627 ..     590     634 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0012
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkkld 58 
                  ++  + vll Gp G+GKt+i++ l  +l+
  CCD24802.1 254 GVEPPRGVLLHGPPGCGKTSIANALAGELK 283
                 5666678****************9988887 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0046
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkek 61 
                   vll Gp G+GKt+++k + ++    +
  CCD24802.1 601 AGVLLWGPPGCGKTLLAKAVANESR-AN 627
                 579***************9988776.44 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.3       3.3   1.3e+03     111     141 ..     161     191 ..      93     224 .. 0.62
   2 !    8.2   0.0    0.0049       1.9       2      21 ..     262     281 ..     261     329 .. 0.68
   3 !    8.9   0.0    0.0029       1.1       5      70 ..     607     667 ..     603     674 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.3
  Viral_helicase1 111 lahlpsslshrvgrrttyllpsdvaeilsak 141
                      +++ + + s +++ +tt   ++d ++ ++ k
       CCD24802.1 161 NKSVTAQWSTVKQESTTTTTNDDNTDTENNK 191
                      3334444455555555555555555555555 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0049
  Viral_helicase1   2 vvhGvpGcGKStlirkllrt 21 
                      + hG pGcGK+++   l+ +
       CCD24802.1 262 LLHGPPGCGKTSIANALAGE 281
                      68**********87777766 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0029
  Viral_helicase1   5 GvpGcGKStlirkllrts.liltvnrptaelltegkpklpnlsvrtvdsflmalvkstkgkililDE 70 
                      G pGcGK+ l + ++++s  ++ +++   ell++ + ++++  +r v +   a v+ +   ++++DE
       CCD24802.1 607 GPPGCGKTLLAKAVANESrANFISIKG-PELLNKYVGESERA-IRQVFTRARASVP-C---VIFFDE 667
                      77***************9988878887.88888887444433.4444444444444.3...677777 PP

>> SKI  Shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00052       0.2       1      22 [.     267     288 ..     267     314 .. 0.84
   2 ?    6.8   0.0     0.018       6.9       1      22 [.     609     630 ..     609     654 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00052
                 TTSSHHHHHHHHHHHHTSEEEE CS
         SKI   1 mGaGKstvGkllAkklglefiD 22 
                 +G+GK++++++lA +l+++fi 
  CCD24802.1 267 PGCGKTSIANALAGELKVPFIS 288
                 6*******************96 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.018
                 TTSSHHHHHHHHHHHHTSEEEE CS
         SKI   1 mGaGKstvGkllAkklglefiD 22 
                 +G+GK+ ++k++A++ + +fi 
  CCD24802.1 609 PGCGKTLLAKAVANESRANFIS 630
                 6*****************9985 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.013       5.2      36      54 ..     261     279 ..     254     283 .. 0.89
   2 ?   -2.0   0.0       5.9   2.3e+03     128     173 ..     304     350 ..     285     360 .. 0.82
   3 !    8.1   0.0    0.0047       1.8      32      52 ..     599     619 ..     578     624 .. 0.76
   4 ?    0.3   0.0       1.2   4.6e+02     128     185 ..     646     707 ..     628     709 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.013
      AAA_25  36 allaGapgtGKttlaldla 54 
                 +ll G+pg+GKt +a  la
  CCD24802.1 261 VLLHGPPGCGKTSIANALA 279
                 689***********98887 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.9
      AAA_25 128 advdaleaaieevegvrlvviDplsralgg.densnsdv.galveale 173
                  ++++l +++++ + + l  +D ++++++  d  +++++ +++v++l 
  CCD24802.1 304 KKIRELFEEAKALA-PCLMFFDEIDAITPKrDGGAQREMeRRIVAQLL 350
                 56888899999965.999999999999999999999998899988875 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0047
      AAA_25  32 agelallaGapgtGKttlald 52 
                 a + +ll+G+pg+GKt la  
  CCD24802.1 599 APAGVLLWGPPGCGKTLLAKA 619
                 556689***********9965 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.2
      AAA_25 128 advdaleaaieevegvrlvviDplsralgg.....densnsdvgalvealeriarrtgaavll 185
                 ++++++  ++++   + ++ +D l+++++      +e s++ v+ l++ l+ + +r g+ v++
  CCD24802.1 646 RAIRQVFTRARA-SVPCVIFFDELDALVPRrdtslSESSSRVVNTLLTELDGLNDRRGIFVVG 707
                 567777778888.56999999*****9999765545555555799999999999999998875 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.021       8.2      52      78 ..     257     283 ..     205     290 .. 0.79
   2 !   11.2   0.0   0.00038      0.15      55     103 ..     602     652 ..     595     672 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.021
      DUF815  52 pannvLLwGarGtGKSslvkallneya 78 
                 p + vLL G  G+GK s+  al  e++
  CCD24802.1 257 PPRGVLLHGPPGCGKTSIANALAGELK 283
                 56789***************9988765 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00038
      DUF815  55 nvLLwGarGtGKSslvkallneyaeeg..Lrlievekedlkelpklvellr 103
                  vLLwG  G+GK  l ka+ ne +++   ++  e+ ++ + e ++ ++++ 
  CCD24802.1 602 GVLLWGPPGCGKTLLAKAVANESRANFisIKGPELLNKYVGESERAIRQVF 652
                 69********************99887333334666666666666555554 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.024       9.2      23      44 ..     259     280 ..     250     298 .. 0.80
   2 ?   -2.2   0.0       7.4   2.9e+03      95     110 ..     319     334 ..     294     382 .. 0.60
   3 !   10.8   0.0   0.00074      0.29      20      52 ..     598     627 ..     584     644 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.024
                      S-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  23 lsvlitGesGtGKellaraihe 44 
                        vl++G  G+GK+ +a+a+  
       CCD24802.1 259 RGVLLHGPPGCGKTSIANALAG 280
                      569***************9864 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 7.4
                      SEEEEETGGGS-HHHH CS
  Sigma54_activat  95 GtlfLDeigelplelQ 110
                        +f+Dei  ++++  
       CCD24802.1 319 CLMFFDEIDAITPKRD 334
                      5678888887776643 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00074
                      TSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS- CS
  Sigma54_activat  20 ktdlsvlitGesGtGKellaraiheaskrkekp 52 
                      + ++ vl+ G  G+GK+lla+a+ ++s+   ++
       CCD24802.1 598 SAPAGVLLWGPPGCGKTLLAKAVANESR---AN 627
                      56789******************99886...34 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0086       3.4       5      22 ..     261     278 ..     258     334 .. 0.84
   2 !    9.2   0.0    0.0023      0.91       5      23 ..     603     623 ..     599     644 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0086
      AAA_24   5 iliyGpsgiGKTtlakel 22 
                 +l+ Gp+g GKT++a+ l
  CCD24802.1 261 VLLHGPPGCGKTSIANAL 278
                 799************988 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0023
      AAA_24   5 iliyGpsgiGKTtlakel..g 23 
                 +l++Gp+g GKT lak    +
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVanE 623
                 89*************988554 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.015       5.8      23      39 ..     261     277 ..     252     284 .. 0.86
   2 ?   -1.8   0.0       3.7   1.5e+03      48      77 ..     385     414 ..     375     420 .. 0.89
   3 !    8.4   0.0    0.0028       1.1      23      44 ..     603     624 ..     591     630 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.015
                 EEEEESTTSSHHHHHHH CS
      NB-ARC  23 valvGmgGvGKttlakq 39 
                 v l+G +G+GKt +a+ 
  CCD24802.1 261 VLLHGPPGCGKTSIANA 277
                 679***********986 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.7
                 CCCBTEEEEEEEESXXHHHHHHHXXHHHHH CS
      NB-ARC  48 egrFdsvawvvvsktdkseeiletilkeLs 77 
                  grFd+ + + v ++++  +il+++ ++L+
  CCD24802.1 385 AGRFDREICLNVPNEVSRLHILKKMSQNLK 414
                 479************************996 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0028
                 EEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC  23 valvGmgGvGKttlakqilnks 44 
                 v l G +G+GKt lak + n+s
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANES 624
                 6789**************9985 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.9e-05     0.031       4      52 ..     261     309 ..     259     418 .. 0.86
   2 ?    1.6   0.0      0.57   2.2e+02       4      33 ..     603     632 ..     601     646 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.9e-05
                 EEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSE CS
         CPT   4 ilLnGgsssGKsslaralqevldepwlhlgvDafvealppkrqdeadgl 52 
                 +lL+G +  GK+s+a+al   l+ p++ +   + v  +  +  ++  +l
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELKVPFISISAPSVVSGMSGESEKKIREL 309
                 89***************************99999998887777755555 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.57
                 EEEEE-TTSSHHHHHHHHHHHSSS-EEEEE CS
         CPT   4 ilLnGgsssGKsslaralqevldepwlhlg 33 
                 +lL G +  GK+ la+a+ + + + ++ ++
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANESRANFISIK 632
                 899***************999999998775 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.048        19      14      36 ..     253     275 ..     226     282 .. 0.75
   2 ?    1.0   0.0      0.58   2.2e+02     125     154 ..     326     356 ..     286     362 .. 0.82
   3 !    7.9   0.0    0.0045       1.7      15      38 ..     596     619 ..     589     630 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.048
      ATPase  14 gGipegrvvlitGepGtGKtifa 36 
                  G+   r vl+ G pG+GKt +a
  CCD24802.1 253 TGVEPPRGVLLHGPPGCGKTSIA 275
                 78888899************887 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.58
      ATPase 125 iDsitgl.ayeekeavaReilrqlvrvlkkl 154
                 iD it+  +  ++ ++ R+i+ ql++ + +l
  CCD24802.1 326 IDAITPKrDGGAQREMERRIVAQLLTSMDEL 356
                 888888888889999************9876 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0045
      ATPase  15 GipegrvvlitGepGtGKtifalq 38 
                 Gi   + vl+ G pG+GKt++a+ 
  CCD24802.1 596 GISAPAGVLLWGPPGCGKTLLAKA 619
                 78888889*************985 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0073       2.9      24      44 ..     261     281 ..     255     352 .. 0.67
   2 !    8.0   0.0    0.0077         3      21      46 ..     600     625 ..     590     671 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0073
                      EEEEEETT--HHHHHHCC--T CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhkn 44 
                      v+l G++G+gk+++A++L+ +
       CCD24802.1 261 VLLHGPPGCGKTSIANALAGE 281
                      9****************9743 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0077
                      SS-EEEEEETT--HHHHHHCC--TTS CS
  Sigma54_activ_2  21 klpvfltGekGsgkelvArlLhknsg 46 
                       + v+l G++G+gk+l A++ +++s 
       CCD24802.1 600 PAGVLLWGPPGCGKTLLAKAVANESR 625
                      5679****************998875 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.041        16      21      45 ..     259     283 ..     249     371 .. 0.63
   2 !    8.1   0.0    0.0057       2.2      23      45 ..     603     625 ..     598     649 .. 0.88
   3 ?   -1.8   0.0       6.3   2.5e+03     104     131 ..     639     672 ..     625     694 .. 0.65

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.041
    ATPase_2  21 eiyfiYGpegsGKtaLlkeiienle 45 
                 + +++ Gp g+GKt++ + ++ +l+
  CCD24802.1 259 RGVLLHGPPGCGKTSIANALAGELK 283
                 557899*********9999888774 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0057
    ATPase_2  23 yfiYGpegsGKtaLlkeiienle 45 
                 ++++Gp g+GKt L k ++++++
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANESR 625
                 5789************9999875 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 6.3
    ATPase_2 104 kaielllekikkkgkk......iiiiiDelqkli 131
                 k++ +  ++i++  ++       +i++Del  l+
  CCD24802.1 639 KYVGESERAIRQVFTRarasvpCVIFFDELDALV 672
                 44444444444443333446668999***98876 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0051         2     117     135 ..     261     279 ..     137     284 .. 0.76
   2 !    7.4   0.0    0.0051         2     117     137 ..     603     623 ..     601     627 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0051
   Parvo_NS1 117 vwfyGpantGktnlaeaIa 135
                 v+++Gp+ +Gkt +a+a+a
  CCD24802.1 261 VLLHGPPGCGKTSIANALA 279
                 6677*************98 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0051
   Parvo_NS1 117 vwfyGpantGktnlaeaIaka 137
                 v+++Gp+ +Gkt la+a a+ 
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANE 623
                 799**************9986 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.014       5.3      12      62 ..     260     310 ..     254     370 .. 0.66
   2 ?    4.9   0.0     0.079        31      13      31 ..     603     621 ..     595     634 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.014
      AAA_19  12 vllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerl 62 
                  +l+ ++pG+GKT + ++   +l+       ++ ++  + g + k++re  
  CCD24802.1 260 GVLLHGPPGCGKTSIANALAGELKVPFISISAPSVVSGMSGESEKKIRELF 310
                 5899**********9988877776554444455555555555555555554 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.079
      AAA_19  13 llvtaGpGtGKTrvlkhiv 31 
                 +l+ ++pG+GKT + k++ 
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVA 621
                 7899********8877665 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.021       8.2       4      24 ..     261     281 ..     259     285 .. 0.90
   2 ?    5.6   0.0     0.032        12       4      24 ..     603     623 ..     601     628 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.021
   PduV-EutP   4 illiGkvgsGKttLtqalkge 24 
                 +ll G+ g+GKt++++al ge
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGE 281
                 8999**************986 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.032
   PduV-EutP   4 illiGkvgsGKttLtqalkge 24 
                 +ll G+ g+GKt L++a+ +e
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANE 623
                 8999*************9987 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.067        26      22      40 ..     261     279 ..     256     284 .. 0.87
   2 ?    7.2   0.0    0.0077         3      22      41 ..     603     622 ..     594     629 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.067
                 EEEE--TTSSTTHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavala 40 
                 v   Gp G+GKt +a ala
  CCD24802.1 261 VLLHGPPGCGKTSIANALA 279
                 5678***********9988 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0077
                 EEEE--TTSSTTHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalav 41 
                 v   Gp G+GKt+la a+a 
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVAN 622
                 6778***********99985 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.044        17       2      24 ..     261     283 ..     260     297 .. 0.88
   2 ?    5.7   0.0     0.033        13       2      32 ..     603     633 ..     602     648 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.044
                 EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellk 24 
                 v++ GppG GKt + + ++ +lk
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELK 283
                 6789************9999996 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.033
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgG 32 
                 v++ GppG GKt l k v+++ + + ++++G
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANESRANFISIKG 633
                 6788**************9998877777776 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1         3   1.2e+03     158     180 ..     141     165 ..     130     181 .. 0.76
   2 ?    9.0   0.0    0.0027       1.1       3      28 ..     263     288 ..     261     292 .. 0.90
   3 ?    3.2   0.0      0.16        64       4      28 ..     606     630 ..     603     632 .. 0.89
   4 ?   -1.2   0.1       3.5   1.4e+03      43     113 ..     767     839 ..     759     844 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3
                     --HHHHHHH..HHHHHHHHHCTSSS CS
  Cytidylate_kin 158 vsleellae..ikeRDklDkerevg 180
                     ++ ++l+++  +++RD+ D++++v 
      CCD24802.1 141 TNEDALIQKnlMIARDTNDMNKSVT 165
                     6677787766699********9885 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0027
                     EE-STTSSHHHHHHHHHHHHT-EEEE CS
  Cytidylate_kin   3 iDGPagsGKssvaralaeklglkyld 28 
                     + GP g GK s+a ala +l++ +++
      CCD24802.1 263 LHGPPGCGKTSIANALAGELKVPFIS 288
                     68*******************99987 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.16
                     E-STTSSHHHHHHHHHHHHT-EEEE CS
  Cytidylate_kin   4 DGPagsGKssvaralaeklglkyld 28 
                      GP g GK  +a+a+a++  +++++
      CCD24802.1 606 WGPPGCGKTLLAKAVANESRANFIS 630
                     59***************99998875 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 3.5
                     TT--TT-HHHHHHHHHT--EEEEEEEEEETTE..E-TTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTT-BSS CS
  Cytidylate_kin  43 rkvdlldeaalvelakevelsfeaekvllnge..dveeelrsdevekavSavaaipavRailvkklrelvkka 113
                     +++  ++ a+l++l++e ++   +++++ n+e   v e+   +e e++   + ++ ++R ++++  ++lvk +
      CCD24802.1 767 ERCRNFSGADLAALVRESSVLALKRSFFKNDEiqSVGENNLDKEFEDLSVGMNKHDQIRVTMNDFHKALVKIK 839
                     566677778888888888887777788877753356677778899999999999999**99999999998844 PP

>> NifW  Nitrogen fixation protein NifW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0013      0.51      29      44 ..     399     414 ..     395     423 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.0013
        NifW  29 nvnRLHILkrfsqyla 44 
                 +v+RLHILk++sq l+
  CCD24802.1 399 EVSRLHILKKMSQNLK 414
                 599**********997 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0073       2.8       2      23 ..     261     283 ..     260     308 .. 0.86
   2 ?    1.5   0.0      0.76     3e+02       2      24 ..     603     626 ..     602     634 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0073
                 EEEEESTTSSHHHHHHHHHTS.T CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.k 23 
                 v++ G p  GK+++ nal ge k
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGElK 283
                 6789***************9743 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.76
                 EEEEESTTSSHHHHHHHHHTS.TE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.ka 24 
                 v++ G p  GK+ L +a  +e +a
  CCD24802.1 603 VLLWGPPGCGKTLLAKAVANEsRA 626
                 6789*************9997665 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   3.2       0.5   1.9e+02      94     147 ..     156     205 ..     104     228 .. 0.45
   2 ?   10.0   0.0     0.002      0.76       2      31 ..     261     290 ..     260     314 .. 0.82
   3 ?   -1.9   0.0       8.8   3.4e+03      49     131 ..     389     487 ..     382     513 .. 0.45
   4 ?    0.4   0.0       1.7   6.8e+02       3      30 ..     604     631 ..     602     633 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.5
   Hydin_ADK  94 aaeekaasskiskkkktsvvsgkkkaesegaksqkqkekktsetaqisssppla 147
                  +    + +  s +++ s+v++++++ + +  +  ++++k+ +t++ s +p+++
  CCD24802.1 156 DT----NDMNKSVTAQWSTVKQESTTTTTNDDNTDTENNKKVSTKKRSKDPTSK 205
                 11....112222222333333333332222222222222222222233333222 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.002
   Hydin_ADK   2 iivhGaPlsGKtatavtLakkYeaAlltiD 31 
                 +++hG+P  GKt++a +La + +  +++i 
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELKVPFISIS 290
                 689****************99999998885 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 8.8
   Hydin_ADK  49 ArelCaeaaieqaekekeeaaeeaekkegq........lsvealvkktselssaaeekaas...skiskkkktsvvsg...........kkkaesegak 125
                  re+C++   e +  +  ++ ++  k  g+        l++  + ++ + l++aa + a +   ++ s+   + +vs+            +k+++    
  CCD24802.1 389 DREICLNVPNEVSRLHILKKMSQNLKIDGSidflklakLTPGFVGADLKSLTTAAGTCAIKrifETYST-LTAPIVSNnntiedvdadaDDKMDI---- 482
                 577777776666665555555555555555455555555555555555555555544443344322222.2333333322222222222222222.... PP

   Hydin_ADK 126 sqkqke 131
                  ++ +e
  CCD24802.1 483 -DQVTE 487
                 .22222 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 1.7
   Hydin_ADK   3 ivhGaPlsGKtatavtLakkYeaAllti 30 
                 ++ G+P  GKt  a ++a +  a +++i
  CCD24802.1 604 LLWGPPGCGKTLLAKAVANESRANFISI 631
                 678***************9999988887 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   3.5       7.3   2.8e+03     126     158 ..      28      60 ..       2      92 .. 0.41
   2 ?    9.8   0.0    0.0016      0.62      20      42 ..     261     283 ..     250     320 .. 0.74
   3 ?    7.4   0.0    0.0085       3.3      19      41 ..     602     624 ..     586     658 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7.3
      AAA_11 126 akeiskeleklakelrafeeeeekeklkkskek 158
                  ++++++++ l+k+ +++++++++++ ++++++
  CCD24802.1  28 DEKTQDKKRYLKKKQQSQDNDDADNEGNQEDQE 60 
                 222222222222222222222222111111111 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0016
      AAA_11  20 tliqGPPGtgKTktivellsqll 42 
                 +l++GPPG+gKT+   +l  +l 
  CCD24802.1 261 VLLHGPPGCGKTSIANALAGELK 283
                 79**********99888887774 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0085
      AAA_11  19 itliqGPPGtgKTktivellsql 41 
                  +l++GPPG+gKT    ++ ++ 
  CCD24802.1 602 GVLLWGPPGCGKTLLAKAVANES 624
                 579**********7776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1608  (0.0896871); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        52  (0.00290033); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              46  [number of targets reported over threshold]
# CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.48
# Mc/sec: 5401.79
//
Query:       CCD24803.1  [L=675]
Description: hypothetical protein NDAI_0D04900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-27   95.0   0.5    2.7e-26   92.5   0.5    2.1  1  CLP1_P        mRNA cleavage and polyadenylation factor CLP1 P
    0.00096   19.2   0.1     0.0025   17.9   0.1    1.9  1  MMR_HSR1      50S ribosome-binding GTPase
      0.005   16.2   0.0     0.0083   15.5   0.0    1.3  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
     0.0066   15.7   3.7      0.013   14.7   3.7    1.6  1  G-alpha       G-protein alpha subunit
  ------ inclusion threshold ------
      0.014   15.9   0.1      0.096   13.2   0.0    2.2  2  ABC_tran      ABC transporter
       0.05   13.6   0.0       0.31   11.1   0.0    2.2  2  AAA_14        AAA domain


Domain annotation for each model (and alignments):
>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.5   9.1e-30   2.7e-26       1     148 [.     275     433 ..     275     488 .. 0.80

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 9.1e-30
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkgr.............kpvyvDlDvGqseispPgtislalverpi..dveegfsldapl..vyffGdtspsdnpslyla 82 
                 G+k+sGKST+ rlL++++l++++               +y+D+D+Gq+e+s P +isl+ ++      +++ +++++ +    + G tsp+d+p+ yl+
  CCD24803.1 275 GGKNSGKSTFLRLLIEKILSNKEstdnkinhnidsnDLLYLDMDPGQPEYSHPESISLSQLNGSKkvLGQHLCQSTSFFlkQIYLGVTSPQDEPTTYLK 373
                 89*****************98874444343334333357********************99886612444444443333233678************** PP

      CLP1_P  83 lvkelareveekleenkkakasgliIntpGwvkglgaellleliealepdvvvvldqeellnelkr 148
                 ++++l++++ee ++       +  +In pGw+kg+g+++l+++i+  +p++v++l+++ + +++ +
  CCD24803.1 374 QIDHLVTTFEELYSR------NTSVINLPGWIKGFGITVLNKIIAKYKPTNVIILESNSSSQNIDD 433
                 **********66555......699********************************9776666543 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   8.5e-07    0.0025       1      55 [.     270     320 ..     270     434 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 8.5e-07
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEEC.GG CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDt.pG 55 
                 +++i+G  N+GKSt+++ l+++  i s+k  t  +in+  ++   +++  +D+ pG
  CCD24803.1 270 RIMIIGGKNSGKSTFLRLLIEK--ILSNKESTDNKINHN-ID--SNDLLYLDMdPG 320
                 699*****************96..677777777777776.54..456666666555 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.8e-06    0.0083      39      65 ..     264     294 ..     243     300 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.8e-06
                   -.....SEEEE--TTSSHHHHHHHHHHHHHT CS
  FtsK_SpoIIIE  39 a....shllvaGatgsGKStalntLilSlat 65 
                        s ++++G++ sGKSt+l+ Li  +++
    CCD24803.1 264 NfeydSRIMIIGGKNSGKSTFLRLLIEKILS 294
                   34456889*****************977765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   3.7   4.4e-06     0.013       9     196 ..     253     436 ..     245     508 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.4e-06
                 XXXXXXXXXXXE...EEEEEEEESTTSSHHHHHHHHHHHCS----HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SCCCS-HCH CS
     G-alpha   9 kslkaerkarkk.krevkllllGqseSGKsTilkqlkllykkgfseeelatwraviqlnivrsiktilealesleselsesfelqelkerldplkkvea 106
                 + +++ +   ++ + + +++++G + SGKsT+l   +ll +k  s++e+    + i +ni +  +++l   + ++++      +   + +l++l+ +++
  CCD24803.1 253 TTIEKISLSHRNfEYDSRIMIIGGKNSGKSTFL---RLLIEKILSNKES--TDNKINHNIDS--NDLLYLDMDPGQPE----YSHPESISLSQLNGSKK 340
                 44444455555556678***************6...5666888998844..44678888766..55555555555555....46677777788877777 PP

                 HHH..................HHCCHHC....-HCHHHHHHHHCCSHHHHHHHCCG.CCTT--TTHHHH.HCTHHHHCSTT----CHHHHCS-----SE CS
     G-alpha 107 sliaklssateee........qeiefnp....raevgedikaLwndpgiqelyerr.nkiklednaeyF.lddleritspdYlptddDilkarlktvGi 191
                  l ++l ++t+          +     +     + + ++i  L+   ++ ely r+ + i+l+ +++ F +  l++i + +Y+pt+  il +   + +i
  CCD24803.1 341 VLGQHLCQSTSFFlkqiylgvT-----SpqdePTTYLKQIDHLV--TTFEELYSRNtSVINLPGWIKGFgITVLNKIIA-KYKPTNVIILESNSSSQNI 431
                 7776666654444544443331.....04233344566777777..79999999887888899***9994445666655.6****99999999888888 PP

                 EEEEE CS
     G-alpha 192 setkf 196
                  ++k+
  CCD24803.1 432 DDLKI 436
                 87776 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   3.2e-05     0.096       8      42 ..     265     299 ..     258     394 .. 0.71
   2 ?   -0.1   0.0      0.42   1.2e+03      26      74 ..     405     458 ..     401     499 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
                 EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlkllagllkpteGei 42 
                 ++ ++++ i+G   +GKSt+l+ll+++   ++++ 
  CCD24803.1 265 FEYDSRIMIIGGKNSGKSTFLRLLIEKILSNKEST 299
                 778999*****************998876644444 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.42
                 HHHHHHTTSS--SEEEEEET.TCEGGG.....B-HHHCCHCEEEE-SS--S-TTS CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxx.....xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  26 tLlkllagllkpteGeilld.gkdlke.....qeleslrkeigvlpqepqlfpel 74 
                 t+l+ ++ ++kpt+  i l+ + ++++     ++ e++r+++++ p  +++  + 
  CCD24803.1 405 TVLNKIIAKYKPTNVII-LEsNSSSQNiddlkIPDEFTRESFKYNPIITKIPANF 458
                 67888888999999888.5515555547667766666666666665554444444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0    0.0001      0.31       5      43 ..     271     312 ..     268     342 .. 0.71
   2 ?   -1.0   0.0      0.56   1.7e+03      81     104 ..     405     428 ..     400     443 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.0001
      AAA_14   5 lvitGaRrvGKTtllkqlikell...vkkesilyinldderd 43 
                 ++i G + +GK+t+l+ li++ l    + ++ +  n+d++++
  CCD24803.1 271 IMIIGGKNSGKSTFLRLLIEKILsnkESTDNKINHNIDSNDL 312
                 6799***************99998773334444444444433 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.56
      AAA_14  81 kalkslvdegknldvivtGSnskl 104
                 ++l++++ ++k  +vi+  Sns+ 
  CCD24803.1 405 TVLNKIIAKYKPTNVIILESNSSS 428
                 578999999999999999999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 4672.72
//
Query:       CCD24804.1  [L=618]
Description: hypothetical protein NDAI_0D04910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.4e-08   33.2  15.1    4.4e-08   33.2  15.1    2.9  3  WSC         WSC domain
     0.0012   19.1   0.3     0.0012   19.1   0.3    3.5  4  Orf78       Orf78 (ac78)
     0.0014   19.3   0.4     0.0067   17.1   0.0    2.3  2  RCR         Chitin synthesis regulation, resistance to Congo 
      0.005   16.8   1.0      0.005   16.8   1.0    4.7  3  TMEM154     TMEM154 protein family
     0.0069   16.2   0.6      0.014   15.2   0.0    1.8  2  YajC        Preprotein translocase subunit
  ------ inclusion threshold ------
      0.038   13.8   0.2       0.12   12.2   0.0    2.0  2  TMEM132D_C  Mature oligodendrocyte transmembrane protein, TME
        1.7    8.1   7.1        9.9    5.7   7.1    2.3  1  SKG6        Transmembrane alpha-helix domain


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2  15.1   1.7e-11   4.4e-08      11      81 ..      38     103 ..      28     104 .. 0.88
   2 ?   -1.7   1.1       1.4   3.5e+03       9      16 ..     186     193 ..     152     216 .. 0.61
   3 ?   -2.7   0.3       2.7     7e+03      23      23 ..     274     274 ..     250     302 .. 0.48

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 1.7e-11
         WSC  11 srrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCG 81 
                 s+++ ++++++d+ ++++ C+++C+  gy+ya+l+ +  C+C+n+ p+++++   s+Cn+ C+G++++ CG
  CCD24804.1  38 SENSAETTEYTDQYQSNGLCSNHCT--GYNYAILQGK-SCWCSNDRPTTQTSL--SNCNQFCPGYDKENCG 103
                 4567778899**************9..********55.*********987766..56*************9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.4
         WSC   9 sesrrllg 16 
                 s+s+++++
  CCD24804.1 186 SSSSSSSS 193
                 12222222 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.7
         WSC  23 s 23 
                 s
  CCD24804.1 274 S 274
                 1 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.2     3e+03      80      97 ..      12      29 ..       8      36 .. 0.63
   2 ?   -1.5   0.1       1.2   3.1e+03      52      52 ..     178     178 ..     134     215 .. 0.55
   3 !   19.1   0.3   4.6e-07    0.0012      31     101 ..     375     444 ..     361     446 .. 0.59
   4 ?   -1.5   1.2       1.2   3.1e+03      36      55 ..     514     533 ..     504     560 .. 0.47

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.2
       Orf78 80 lyviyYfvilrerqkssv 97
                l+ + +f+il +++k +v
  CCD24804.1 12 LFYLQFFLILSRDKKFQV 29
                566777877766665544 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.2
       Orf78  52 k 52 
                 +
  CCD24804.1 178 S 178
                 1 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 4.6e-07
       Orf78  31 ndkaenkkekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYfvilrerqkssvkeps 101
                 n++++  +++ +++++n+++++++++   ++  ++  + +++ ++vl +++v+++f+i+  r+k+ + e++
  CCD24804.1 375 NNSTNVLTNH-NNNNNNKSSNNKNSNGYWNSPGKVAGTFVVVGIVVLAIIIVLLWFFIINPRRKQRNFEKE 444
                 2222223333.333333333333333566666777777777778888888888888888888877665555 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.2
       Orf78  36 nkkekksaaeknditekesn 55 
                 ++++k+ +++++ +++++s 
  CCD24804.1 514 YNNNKNPNNSHTPMSKHNSI 533
                 22222222222222222222 PP

>> RCR  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.7   4.4e+03      68      87 ..     388     407 ..     342     409 .. 0.64
   2 !   17.1   0.0   2.6e-06    0.0067       3      72 ..     413     538 ..     411     577 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.7
         RCR  68 ptytpnaneedaGyydqeGk 87 
                  + ++ +n++ +Gy ++ Gk
  CCD24804.1 388 NNNKSSNNKNSNGYWNSPGK 407
                 22233335677888777665 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 2.6e-06
         RCR   3 vlfaiiivlillvllltlrvakrRrrrGlqplygtgWlvsa.......................................................ppp 46 
                 v++ i++++i++vll +++++ rR++r  +  y  + l+++                                                       ++ 
  CCD24804.1 413 VVVGIVVLAIIIVLLWFFIINPRRKQRNFEKEYNDAVLGNGgnydypispnhenknnsiiiddgrrspsslstspefvyadekgiieprtpsitdnNSS 511
                 7889999999999*************************884578999999*********************6666666666666666666666666666 PP

         RCR  47 PsYgqsqqqynqaes.ltsatvptytp 72 
                 P+Y++++++ n +++  +++   ++++
  CCD24804.1 512 PTYNNNKNPNNSHTPmSKHNSIIKFNQ 538
                 666666665555544444455555555 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -38.3  50.2         7   1.8e+04       8      55 ..     148     195 ..     138     334 .. 0.80
   2 !   16.8   1.0   1.9e-06     0.005      14      98 ..     358     450 ..     335     473 .. 0.52
   3 ?   -3.2   0.6       2.8   7.3e+03      17      17 ..     527     527 ..     499     568 .. 0.48

  Alignments for each domain:
  == domain 1  score: -38.3 bits;  conditional E-value: 7
     TMEM154   8 gdtaletatleeesadatsaasteseslkqeeakeslssaelsnesdq 55 
                 g++++et++++  s+++t++a +++ s+ ++++  s ss   s  s++
  CCD24804.1 148 GEVSTETTKTSISSSTSTTTAPATKTSISTSTTTSSSSSSSSSSSSSS 195
                 555555555555555555555555555554444444333333332222 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 1.9e-06
     TMEM154  14 tatleeesadatsaasteseslkqeeakeslssaelsnesdqlel........vlmiiiPlvllillllvviili.qkkkrkrsKddekseaes 98 
                 t+ ++++ +++t+++ + ++s +  +++++ ++ + sn++++              +++  v+l++++++  ++i +  +++r+ ++e+++a +
  CCD24804.1 358 TQVITKTFSPSTITTIS-NNSTNVLTNHNNNNNNKSSNNKNSNGYwnspgkvaGTFVVVGIVVLAIIIVLLWFFIiNPRRKQRNFEKEYNDAVL 450
                 22333333333333333.4444422222333333333333333335788887734556666666666666555550444444555566666554 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 2.8
     TMEM154  17 l 17 
                 +
  CCD24804.1 527 M 527
                 2 PP

>> YajC  Preprotein translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       4.3   1.1e+04      13      24 ..      13      26 ..       6      33 .. 0.60
   2 !   15.2   0.0   5.6e-06     0.014       3      33 ..     417     447 ..     415     453 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.3
        YajC 13 fy..fllirpqqkk 24
                fy  f+li ++ kk
  CCD24804.1 13 FYlqFFLILSRDKK 26
                33336666666665 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 5.6e-06
        YajC   3 llplvlifvifyfllirpqqkkqkehkemla 33 
                 +++l +i+v+++f++i p++k++   ke  +
  CCD24804.1 417 IVVLAIIIVLLWFFIINPRRKQRNFEKEYND 447
                 67788999**************998888765 PP

>> TMEM132D_C  Mature oligodendrocyte transmembrane protein, TMEM132D, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.7e-05      0.12       5      66 ..     385     442 ..     376     470 .. 0.68
   2 ?   -3.9   0.2       4.7   1.2e+04       9      23 ..     515     529 ..     508     534 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.7e-05
  TMEM132D_C   5 aqaeapkeegeksesdlvqasraltdLEiGmYaLlgvfClAilvflincvvyalkfrrkkvp 66 
                 ++++++k++++k++++  ++++++     G ++++g+  lAi+++l+   + + + ++++ +
  CCD24804.1 385 NNNNNNKSSNNKNSNGYWNSPGKV----AGTFVVVGIVVLAIIIVLLWFFIINPRRKQRNFE 442
                 233333333334555566666666....59*************9998665555555554443 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 4.7
  TMEM132D_C   9 apkeegeksesdlvq 23 
                 +++++ ++s++ +++
  CCD24804.1 515 NNNKNPNNSHTPMSK 529
                 333333334444444 PP

>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.1    0.0039       9.9      16      38 .]     415     437 ..     410     437 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0039
        SKG6  16 VaVPVaViiivLlailifvrRRk 38 
                 V++ V +iiivLl ++i+  RRk
  CCD24804.1 415 VGIVVLAIIIVLLWFFIINPRRK 437
                 34445668999999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2376  (0.132523); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                       176  (0.0098165); expected 17.9 (0.001)
Passed Fwd filter:                        49  (0.002733); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.29u 0.31s 00:00:01.60 Elapsed: 00:00:00.52
# Mc/sec: 3599.68
//
Query:       CCD24805.1  [L=170]
Description: hypothetical protein NDAI_0D04920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-30  103.7   2.0    5.5e-30  103.2   2.0    1.3  1  Prp19        Prp19/Pso4-like
    7.1e-05   22.8   6.2    0.00012   22.1   6.2    1.3  1  BRE1         BRE1 E3 ubiquitin ligase
    0.00018   21.6   0.2    0.00052   20.1   0.1    1.8  1  U-box        U-box domain
     0.0091   15.8   0.7       0.14   12.0   0.0    2.4  2  zf-Nse       Zinc-finger of the MIZ type in Nse subunit
  ------ inclusion threshold ------
      0.072   13.5   6.5       0.12   12.8   6.5    1.4  1  Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C te
       0.15   12.3   3.9       0.67   10.2   0.2    2.4  2  HALZ         Homeobox associated leucine zipper
       0.19   11.9   3.5       0.25   11.5   0.2    2.2  2  bZIP_1       bZIP transcription factor
        1.3    8.9   7.3       0.52   10.2   1.2    2.2  2  GIT_CC       GIT coiled-coil Rho guanine nucleotide exchange 
        1.6    9.4   6.5        3.4    8.4   5.2    1.9  2  YabA         Initiation control protein YabA


Domain annotation for each model (and alignments):
>> Prp19  Prp19/Pso4-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   2.0   2.8e-33   5.5e-30       2      68 .]      74     140 ..      73     140 .. 0.98

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 2.8e-33
                 SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH CS
       Prp19   2 atSiPslLstlqnEWDalmletfelrkqleqtrqeLsqaLYqnDAAvrViArllkerdearealael 68 
                 ++SiP+lLstlqnEWDa+mle+f+lrkql++++++ s+aLY++DAA++V++r++ke++++ ++l++l
  CCD24805.1  74 NYSIPNLLSTLQNEWDAIMLENFKLRKQLDSLTKQYSTALYERDAAKNVATRIMKEKNQLTKDLQNL 140
                 89**************************************************************986 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   6.2   5.8e-08   0.00012       5      71 ..      81     147 ..      78     166 .. 0.95

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 5.8e-08
        BRE1   5 LvklekafeelseqlskkvkeltileekklrleaekakadqkyfaamrskdalenelkkLnkllsKs 71 
                 L  l++++++   ++ k+ k+l +l+++ + +  e + a++    +m++k++l+++l++L+ +++K 
  CCD24805.1  81 LSTLQNEWDAIMLENFKLRKQLDSLTKQYSTALYERDAAKNVATRIMKEKNQLTKDLQNLTLQINKD 147
                 7889*************************************************************95 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   2.6e-07   0.00052       7      60 ..       3      56 ..       1      62 [. 0.89

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.6e-07
                -TTT-SB-SSEEEETTT.EEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHH CS
       U-box  7 dpitlelmkdPvilpsg.vvvdrstiekhllsrdktdPftrepltqdqlipnlel 60
                + i+  l k+Pv++p +  ++++s ie ++++ +  dP+ ++p+t+ +li+ ++ 
  CCD24805.1  3 CAISGKLPKEPVLSPKSkCIFEKSLIELYIDE-NGKDPISNTPMTKPELISISQT 56
                88999999*********9999***********.9************999976655 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0     7e-05      0.14      14      47 ..       3      36 ..       1      38 [. 0.90
   2 ?    2.8   0.1     0.053   1.1e+02      13      24 ..      37      48 ..      34      53 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7e-05
                -TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS CS
      zf-Nse 14 CPltlqpfeePvtskkCpHvFEreaIlelikrkk 47
                C ++ +  +ePv s k + +FE++ I+ +i+++ 
  CCD24805.1  3 CAISGKLPKEPVLSPKSKCIFEKSLIELYIDENG 36
                99999999**********************7765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.053
                B-TTTSSB-SSE CS
      zf-Nse 13 kCPltlqpfeeP 24
                k+P++  p+++P
  CCD24805.1 37 KDPISNTPMTKP 48
                89*********9 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   6.5     6e-05      0.12       5      81 ..      83     157 ..      79     165 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6e-05
  Uso1_p115_C   5 eleseaaslkdeneklkaelqslskalesleqkeakkaaesqakeleaenkklekeleklraelkeekekekekqkE 81 
                   l++e   +  en kl ++l+sl+k++  +  +    aa+++a+++ +e+++l+k+l++l  ++++   + +e+++E
   CCD24805.1  83 TLQNEWDAIMLENFKLRKQLDSLTKQYSTALYE--RDAAKNVATRIMKEKNQLTKDLQNLTLQINKDFASDNEDENE 157
                  566777777788999**************9999..99***************************9998888866444 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00034      0.67      17      41 ..      84     108 ..      82     110 .. 0.90
   2 ?    2.9   0.4     0.066   1.3e+02      25      39 ..     127     141 ..     123     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00034
        HALZ  17 LksdydsLkkenekLkaelqeLkek 41 
                 L+ ++d++  en kL+++l +L+++
  CCD24805.1  84 LQNEWDAIMLENFKLRKQLDSLTKQ 108
                 788999****************976 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.066
        HALZ  25 kkenekLkaelqeLk 39 
                  ke+++L + lq L+
  CCD24805.1 127 MKEKNQLTKDLQNLT 141
                 5899******99997 PP

>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   0.00012      0.25      30      58 ..      83     111 ..      80     117 .. 0.91
   2 ?    0.8   0.4      0.27   5.5e+02      39      55 ..     128     143 ..     119     147 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  30 eLerrvkaLekeNksLkseleelkkevek 58 
                  L+++ +a+  eN +L+++l++l+k++++
  CCD24805.1  83 TLQNEWDAIMLENFKLRKQLDSLTKQYST 111
                 799***********************985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHH CS
      bZIP_1  39 ekeNksLkseleelkke 55 
                 +++N+ L + l++l+ +
  CCD24805.1 128 KEKNQ-LTKDLQNLTLQ 143
                 33333.66666555544 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.2   0.00026      0.52      35      66 .]      70     101 ..      57     101 .. 0.87
   2 ?    2.2   0.6     0.085   1.7e+02      33      55 ..     124     146 ..     117     158 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00026
      GIT_CC  35 LlkvNtslsdelrlLQskvqkLqaeNaqlrdq 66 
                  l++N s+ + l+ LQ++ + ++ eN +lr+q
  CCD24805.1  70 TLNANYSIPNLLSTLQNEWDAIMLENFKLRKQ 101
                 6899**************************97 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.085
      GIT_CC  33 qqLlkvNtslsdelrlLQskvqk 55 
                 + ++k +++l++ l+ L  +++k
  CCD24805.1 124 TRIMKEKNQLTKDLQNLTLQINK 146
                 5689999******9999777765 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.2    0.0034       6.8      25      60 ..      75     110 ..      51     124 .. 0.64
   2 ?    8.4   5.2    0.0017       3.4       5      68 ..      97     160 ..      93     169 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0034
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXX CS
        YabA  25 eelkeelaelleenaeLeleneklrerleeeekkek 60 
                  ++ + l++l +e +++ len klr++l++ +k+ +
  CCD24805.1  75 YSIPNLLSTLQNEWDAIMLENFKLRKQLDSLTKQYS 110
                 456666777888888888888888888844443333 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXX CS
        YabA   5 elfdkleeleeqleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelse 68 
                 +l ++l++l++q ++ l e ++ k+  +++++e ++L+ + ++l  +++++ ++++e+++e + 
  CCD24805.1  97 KLRKQLDSLTKQYSTALYERDAAKNVATRIMKEKNQLTKDLQNLTLQINKDFASDNEDENEDEP 160
                 68899***************************************99994433333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1494  (0.0833287); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1302.61
//
Query:       CCD24806.1  [L=229]
Description: hypothetical protein NDAI_0D04930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.4e-102  333.6  13.3    1.9e-33  114.0   0.6    3.0  3  ubiquitin        Ubiquitin family
    1.3e-48  162.7  13.8    1.2e-15   57.1   0.7    3.0  3  Rad60-SLD        Ubiquitin-2 like Rad60 SUMO-like
    7.6e-18   64.8   6.1    0.00026   21.4   0.1    4.6  3  Ubiquitin_2      Ubiquitin-like domain
    1.7e-12   47.1   1.7      0.016   15.1   0.1    3.2  3  TBK1_ULD         TANK binding kinase 1 ubiquitin-like domain
    1.8e-12   47.5   2.2      0.013   15.8   0.1    3.1  3  Ubiquitin_5      Ubiquitin-like domain
    4.7e-11   42.8   1.3      0.073   13.2   0.0    3.9  3  Rad60-SLD_2      Ubiquitin-2 like Rad60 SUMO-like
    7.2e-10   39.4   0.3       0.21   12.1   0.0    3.2  3  DUF2407          DUF2407 ubiquitin-like domain
    2.4e-08   34.0   0.2       0.39   10.5   0.0    3.1  3  Sde2_N_Ubi       Silencing defective 2 N-terminal ubiquitin d
    2.4e-06   27.5  16.0         11    6.1   0.2    6.0  6  Ubiquitin_4      Ubiquitin-like domain
    8.5e-05   22.7   1.0          8    6.7   0.0    3.2  3  DUF3861          Domain of Unknown Function with PDB structur
    0.00015   21.5   2.1        6.9    6.6   0.0    3.3  3  ACT_5            ACT domain
    0.00028   21.2   0.0         20    5.6   0.0    3.6  3  DUF2870          Protein of unknown function (DUF2870)
    0.00061   19.2   0.1        1.1    8.5   0.0    2.3  2  Methyltrans_RNA  RNA methyltransferase
     0.0011   19.6   0.1         34    5.3   0.0    3.2  3  Big_7            Bacterial Ig domain
      0.003   17.7   2.9         19    5.5   0.1    3.3  3  YcgR_2           Flagellar protein YcgR
     0.0069   16.5   3.0        4.5    7.4   0.0    3.1  3  UDP-g_GGTase     UDP-glucose:Glycoprotein Glucosyltransferase
     0.0077   15.7   0.0         15    5.0   0.0    3.0  3  DUF969           Protein of unknown function (DUF969)
  ------ inclusion threshold ------
      0.031   14.9   0.0         95    3.7   0.0    3.1  3  DUF493           Protein of unknown function (DUF493)
      0.031   14.0   0.0         71    3.2   0.0    3.2  3  Raf1_HTH         Rubisco accumulation factor 1 helix turn hel
      0.032   14.8   0.3         96    3.7   0.0    3.3  3  ACT_4            ACT domain
      0.083   13.0   0.0         62    3.8   0.0    3.4  3  ORF11CD3         ORF11CD3 domain
       0.12   12.5   2.6         72    3.6   0.1    3.2  3  ProRS-C_2        Prolyl-tRNA synthetase, C-terminal
       0.13   12.4  18.4        4.5    7.6   1.4    3.3  3  Tash_PEST        Tash protein PEST motif
       0.27   11.1   3.4         76    3.3   0.0    4.3  3  Myosin_N         Myosin N-terminal SH3-like domain
       0.46   10.1   1.7    1.1e+02    2.5   0.0    3.2  3  DMA              DMRTA motif
       0.53    8.9  10.5        8.3    4.9   0.4    3.9  4  Plexin_cytopl    Plexin cytoplasmic RasGAP domain
       0.85    9.4   5.0         67    3.3   0.1    3.3  3  PI3K_p85B        PI3-kinase family, p85-binding domain
        2.8    7.9   4.9    1.2e+02    2.6   0.1    3.3  3  FlgD_ig          FlgD Ig-like domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.6     3e-36   1.9e-33       1      72 []       3      74 ..       3      74 .. 0.99
   2 !  114.0   0.6     3e-36   1.9e-33       1      72 []      79     150 ..      79     150 .. 0.99
   3 !  114.0   0.6     3e-36   1.9e-33       1      72 []     155     226 ..     155     226 .. 0.99

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 3e-36
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72
                i+vktl+gk+itleve+sdt++++K ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  CCD24806.1  3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                9********************************************************************986 PP

  == domain 2  score: 114.0 bits;  conditional E-value: 3e-36
                 EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin   1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72 
                 i+vktl+gk+itleve+sdt++++K ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  CCD24806.1  79 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150
                 9********************************************************************986 PP

  == domain 3  score: 114.0 bits;  conditional E-value: 3e-36
                 EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin   1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72 
                 i+vktl+gk+itleve+sdt++++K ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  CCD24806.1 155 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226
                 9********************************************************************986 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.7   1.8e-18   1.2e-15       1      72 []       1      71 [.       1      71 [. 0.98
   2 !   57.1   0.7   1.8e-18   1.2e-15       1      72 []      77     147 ..      77     147 .. 0.98
   3 !   57.1   0.7   1.8e-18   1.2e-15       1      72 []     153     223 ..     153     223 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.8e-18
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72
                ++i++k+ +gk+++++V+++ t+ +++++ ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  CCD24806.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
                89************************************.******************************986 PP

  == domain 2  score: 57.1 bits;  conditional E-value: 1.8e-18
                 EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD   1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72 
                 ++i++k+ +gk+++++V+++ t+ +++++ ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  CCD24806.1  77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147
                 89************************************.******************************986 PP

  == domain 3  score: 57.1 bits;  conditional E-value: 1.8e-18
                 EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD   1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72 
                 ++i++k+ +gk+++++V+++ t+ +++++ ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  CCD24806.1 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 223
                 89************************************.******************************986 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   4.5e-07   0.00029      17      80 ..      14      69 ..       2      70 .. 0.86
   2 !   21.4   0.1   4.1e-07   0.00026      15      80 ..      88     145 ..      77     146 .. 0.85
   3 !   21.4   0.1   4.1e-07   0.00026      15      80 ..     164     221 ..     153     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 4.5e-07
                 EEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2 17 errfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80
                 +  +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   CCD24806.1 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 69
                 5667899************************99........56678999********9999995 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 4.1e-07
                  EEEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2  15 sserrfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80 
                    +  +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   CCD24806.1  88 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 145
                  556678899************************99........56678999********9999995 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 4.1e-07
                  EEEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2  15 sserrfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80 
                    +  +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   CCD24806.1 164 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 221
                  556678899************************99........56678999********9999995 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.7e-05     0.017      19      53 ..      17      51 ..       5      71 .. 0.86
   2 !   15.1   0.1   2.6e-05     0.016      19      53 ..      93     127 ..      78     147 .. 0.86
   3 !   15.0   0.1   2.7e-05     0.017      19      53 ..     169     203 ..     154     221 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.7e-05
    TBK1_ULD 19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53
                +++ +t++++  +++++  i++++Q l+f g++l 
  CCD24806.1 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
                67899***************************973 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.6e-05
    TBK1_ULD  19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53 
                 +++ +t++++  +++++  i++++Q l+f g++l 
  CCD24806.1  93 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 127
                 6789****************************973 PP

  == domain 3  score: 15.0 bits;  conditional E-value: 2.7e-05
    TBK1_ULD  19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53 
                 +++ +t++++  +++++  i++++Q l+f g++l 
  CCD24806.1 169 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 203
                 6789****************************974 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.8e-05     0.018      34      93 ..      13      73 ..       5      78 .. 0.83
   2 !   15.8   0.1   2.1e-05     0.013      32      93 ..      87     149 ..      66     154 .. 0.83
   3 !   15.4   0.1   2.9e-05     0.018      33      92 ..     164     224 ..     153     228 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.8e-05
  Ubiquitin_5 34 klletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLkl 93
                  +le++ + t +++ ski ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+l
   CCD24806.1 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLRL 73
                 55666666678899999999****99***********************999875467765 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.1e-05
  Ubiquitin_5  32 kkklletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLkl 93 
                  k  +le++ + t +++ ski ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+l
   CCD24806.1  87 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLRL 149
                  4556777777788899999********9***********************999875467765 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 2.9e-05
  Ubiquitin_5  33 kklletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLk 92 
                    +le++ + t +++ ski ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+
   CCD24806.1 164 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLR 224
                  4566666677888999999******99***********************99987546666 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00013     0.082      17      87 ..      14      71 ..       2      75 .. 0.69
   2 !   13.2   0.0   0.00011     0.073      12      87 ..      86     147 ..      76     151 .. 0.69
   3 !   13.1   0.0   0.00012     0.076      12      87 ..     162     223 ..     152     226 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00013
                 EEEEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE CS
  Rad60-SLD_2 17 pvkfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvv 87
                  ++ ++++t++++k k+     +dke  p  +++ +li aGk Le+ +tl++++++        +++H+v+
   CCD24806.1 14 TLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVL 71
                 55666777777777777.....4555533..34559****************965433......3566665 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00011
                  S-EEEEEEEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE CS
  Rad60-SLD_2  12 GsDigpvkfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvv 87 
                  G+ +  ++ ++++t++++k k+     +dke  p  +++ +li aGk Le+ +tl++++++        +++H+v+
   CCD24806.1  86 GK-TITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVL 147
                  55.5556667777777777777.....4555533..34559****************965433......3566665 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 0.00012
                  S-EEEEEEEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE CS
  Rad60-SLD_2  12 GsDigpvkfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvv 87 
                  G+ +  ++ ++++t++++k k+     +dke  p  +++ +li aGk Le+ +tl++++++        +++H+v+
   CCD24806.1 162 GK-TITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVL 223
                  55.5556667777777777777.....4555533..34559****************965433......3566665 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00033      0.21      14      64 ..      13      59 ..       7      88 .. 0.82
   2 !   11.9   0.0   0.00038      0.25      14      64 ..      89     135 ..      80     148 .. 0.81
   3 !   11.9   0.0    0.0004      0.26      14      63 ..     165     210 ..     156     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00033
     DUF2407 14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslass 64
                ++L+++  ++ t+ ++k  i ++    +   + rLI+aG+ Led  +l++ 
  CCD24806.1 13 ITLEVE--SSDTIDNVKSKIQDKE--GIPPDQQRLIFAGKQLEDGRTLSDY 59
                566666..6789999999999987..67777789*************9874 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00038
     DUF2407  14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslass 64 
                 ++L+++  ++ t+ ++k  i ++    +   + rLI+aG+ Led  +l++ 
  CCD24806.1  89 ITLEVE--SSDTIDNVKSKIQDKE--GIPPDQQRLIFAGKQLEDGRTLSDY 135
                 566666..6789999999999987..67777789************99874 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.0004
     DUF2407  14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslas 63 
                 ++L+++  ++ t+ ++k  i ++    +   + rLI+aG+ Led  +l++
  CCD24806.1 165 ITLEVE--SSDTIDNVKSKIQDKE--GIPPDQQRLIFAGKQLEDGRTLSD 210
                 566666..6789999999999987..67777789************9986 PP

>> Sde2_N_Ubi  Silencing defective 2 N-terminal ubiquitin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00061      0.39       2      88 ..       2      76 ..       1      78 [. 0.85
   2 !   10.4   0.0   0.00065      0.42       2      88 ..      78     152 ..      77     153 .. 0.84
   3 !   10.4   0.0   0.00065      0.41       2      88 ..     154     228 ..     153     229 .] 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00061
  Sde2_N_Ubi  2 nvlvssfdgltlpstlsltlpstatvsdlvdklserlpeslkesliLttvsnkqlllssdvslssllassadsellslrllvrlrGG 88
                +++v+++ g+    t++l++ s+ t+ ++ +k++++      +   L  + + ql  ++  +ls++  ++++    +l+l++rlrGG
  CCD24806.1  2 QIFVKTLTGK----TITLEVESSDTIDNVKSKIQDKEGIPPDQ-QRLIFAGK-QL--EDGRTLSDYNIQKES----TLHLVLRLRGG 76
                8999999996....999*****************998877555.45555554.66..99999****999999....99********9 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00065
  Sde2_N_Ubi   2 nvlvssfdgltlpstlsltlpstatvsdlvdklserlpeslkesliLttvsnkqlllssdvslssllassadsellslrllvrlrGG 88 
                 +++v+++ g+    t++l++ s+ t+ ++ +k++++      +   L  + + ql  ++  +ls++  ++++    +l+l++rlrGG
  CCD24806.1  78 QIFVKTLTGK----TITLEVESSDTIDNVKSKIQDKEGIPPDQ-QRLIFAGK-QL--EDGRTLSDYNIQKES----TLHLVLRLRGG 152
                 8999999996....999*****************998877555.45555544.66..99999****999999....99********9 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00065
  Sde2_N_Ubi   2 nvlvssfdgltlpstlsltlpstatvsdlvdklserlpeslkesliLttvsnkqlllssdvslssllassadsellslrllvrlrGG 88 
                 +++v+++ g+    t++l++ s+ t+ ++ +k++++      +   L  + + ql  ++  +ls++  ++++    +l+l++rlrGG
  CCD24806.1 154 QIFVKTLTGK----TITLEVESSDTIDNVKSKIQDKEGIPPDQ-QRLIFAGK-QL--EDGRTLSDYNIQKES----TLHLVLRLRGG 228
                 8999999996....999*****************998877555.45555544.66..99999****999999....99********9 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.2     0.017        11       1      32 [.       1      32 [.       1      36 [. 0.94
   2 ?    5.6   0.0     0.026        17      58      86 ..      43      70 ..      39      73 .. 0.83
   3 ?    6.1   0.2     0.017        11       1      32 [.      77     108 ..      77     112 .. 0.94
   4 ?    5.6   0.0     0.026        17      58      86 ..     119     146 ..     115     149 .. 0.83
   5 ?    6.1   0.2     0.017        11       1      32 [.     153     184 ..     153     188 .. 0.94
   6 ?    5.6   0.0     0.026        17      58      86 ..     195     222 ..     191     225 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.017
  Ubiquitin_4  1 lkvtvkkldgeslevvvkqnatvkdLkkaier 32
                 +++ vk l g+++ ++v+++ t+ ++k  i+ 
   CCD24806.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQD 32
                 7899*************************997 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.026
  Ubiquitin_4 58 LsfegekLkddkaklkeygirnkselsFv 86
                 L+f g++L+ d  +l++y i+++s+l+ v
   CCD24806.1 43 LIFAGKQLE-DGRTLSDYNIQKESTLHLV 70
                 889999986.6789***********9976 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.017
  Ubiquitin_4   1 lkvtvkkldgeslevvvkqnatvkdLkkaier 32 
                  +++ vk l g+++ ++v+++ t+ ++k  i+ 
   CCD24806.1  77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQD 108
                  7899*************************997 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.026
  Ubiquitin_4  58 LsfegekLkddkaklkeygirnkselsFv 86 
                  L+f g++L+ d  +l++y i+++s+l+ v
   CCD24806.1 119 LIFAGKQLE-DGRTLSDYNIQKESTLHLV 146
                  889999986.6789***********9976 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.017
  Ubiquitin_4   1 lkvtvkkldgeslevvvkqnatvkdLkkaier 32 
                  +++ vk l g+++ ++v+++ t+ ++k  i+ 
   CCD24806.1 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQD 184
                  7899*************************997 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.026
  Ubiquitin_4  58 LsfegekLkddkaklkeygirnkselsFv 86 
                  L+f g++L+ d  +l++y i+++s+l+ v
   CCD24806.1 195 LIFAGKQLE-DGRTLSDYNIQKESTLHLV 222
                  889999986.6789***********9976 PP

>> DUF3861  Domain of Unknown Function with PDB structure (DUF3861)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.014       8.9      19      60 ..       9      50 ..       5      58 .. 0.87
   2 ?    6.7   0.0     0.013         8      19      60 ..      85     126 ..      77     134 .. 0.87
   3 ?    6.6   0.0     0.013       8.6      19      59 ..     161     201 ..     153     205 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.014
     DUF3861 19 eekpleFeaenhdDilkiverlkkkedldadeaaalavglkL 60
                + k++++e+e++d i ++  ++++ke++ +d+++ +  g +L
  CCD24806.1  9 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 50
                5579*************************9998877766655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.013
     DUF3861  19 eekpleFeaenhdDilkiverlkkkedldadeaaalavglkL 60 
                 + k++++e+e++d i ++  ++++ke++ +d+++ +  g +L
  CCD24806.1  85 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL 126
                 5579*************************9998877766655 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.013
     DUF3861  19 eekpleFeaenhdDilkiverlkkkedldadeaaalavglk 59 
                 + k++++e+e++d i ++  ++++ke++ +d+++ +  g +
  CCD24806.1 161 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQ 201
                 5579*************************999887766655 PP

>> ACT_5  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.012       7.9      34      53 ..      11      30 ..       1      31 [. 0.83
   2 ?    6.6   0.0     0.011       6.9      33      53 ..      86     106 ..      76     107 .. 0.82
   3 ?    6.6   0.0     0.011       6.9      33      53 ..     162     182 ..     152     183 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.012
       ACT_5 34 vrieltVesersvelLsnQl 53
                 +i+l+Ves+++++++ +++
  CCD24806.1 11 KTITLEVESSDTIDNVKSKI 30
                58**************9998 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.011
       ACT_5  33 tvrieltVesersvelLsnQl 53 
                   +i+l+Ves+++++++ +++
  CCD24806.1  86 GKTITLEVESSDTIDNVKSKI 106
                 468**************9998 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.011
       ACT_5  33 tvrieltVesersvelLsnQl 53 
                   +i+l+Ves+++++++ +++
  CCD24806.1 162 GKTITLEVESSDTIDNVKSKI 182
                 468**************9998 PP

>> DUF2870  Protein of unknown function (DUF2870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.031        20       3      25 ..      43      65 ..      41      76 .. 0.79
   2 ?    5.6   0.0     0.031        20       3      25 ..     119     141 ..     117     152 .. 0.79
   3 ?    5.6   0.0     0.032        21       3      25 ..     195     217 ..     193     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.031
     DUF2870  3 lWwagkelqrgkklsdyvGkNek 25
                l +agk+l++g++lsdy  + e 
  CCD24806.1 43 LIFAGKQLEDGRTLSDYNIQKES 65
                889*************9766555 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.031
     DUF2870   3 lWwagkelqrgkklsdyvGkNek 25 
                 l +agk+l++g++lsdy  + e 
  CCD24806.1 119 LIFAGKQLEDGRTLSDYNIQKES 141
                 889*************9766555 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.032
     DUF2870   3 lWwagkelqrgkklsdyvGkNek 25 
                 l +agk+l++g++lsdy  + e 
  CCD24806.1 195 LIFAGKQLEDGRTLSDYNIQKES 217
                 889*************9765555 PP

>> Methyltrans_RNA  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0018       1.2       2      61 ..      60     118 ..      59     124 .. 0.82
   2 !    8.5   0.0    0.0017       1.1       2      61 ..     136     194 ..     135     203 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0018
                      EEEHHHHHHHHTTTT--TT-EEEEEESSSEEEEEEEEEEESS.EEEEEEEEEEE---SSSS CS
  Methyltrans_RNA   2 sltdeeahHlvkVlRlkegdeiklfdgdgkeyeaeieeiskk.kvtvkilekeeenkespe 61 
                      ++++e + Hl  VlRl+ g +i +    gk ++ e+e+ +   +v+ ki++ke +++++++
       CCD24806.1  60 NIQKESTLHL--VLRLRGGMQIFVKTLTGKTITLEVESSDTIdNVKSKIQDKEGIPPDQQR 118
                      5788999999..*************************998751557778777777776655 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0017
                      EEEHHHHHHHHTTTT--TT-EEEEEESSSEEEEEEEEEEESS.EEEEEEEEEEE---SSSS CS
  Methyltrans_RNA   2 sltdeeahHlvkVlRlkegdeiklfdgdgkeyeaeieeiskk.kvtvkilekeeenkespe 61 
                      ++++e + Hl  VlRl+ g +i +    gk ++ e+e+ +   +v+ ki++ke +++++++
       CCD24806.1 136 NIQKESTLHL--VLRLRGGMQIFVKTLTGKTITLEVESSDTIdNVKSKIQDKEGIPPDQQR 194
                      5788999999..*************************998751567778777777776655 PP

>> Big_7  Bacterial Ig domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.052        34      13      42 ..       7      34 ..       6      56 .. 0.81
   2 ?    5.3   0.0     0.052        34      13      42 ..      83     110 ..      82     132 .. 0.81
   3 ?    5.3   0.0     0.052        34      13      42 ..     159     186 ..     158     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.052
                -EBTSEEEEEEEEE-SS-EEEEEEEETTEE CS
       Big_7 13 tvsggtvtisasAsddggvskVefyvdgtl 42
                t++g+t+t++++ sd   +++V+  +++++
  CCD24806.1  7 TLTGKTITLEVESSDT--IDNVKSKIQDKE 34
                6678899999999998..888888877766 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.052
                 -EBTSEEEEEEEEE-SS-EEEEEEEETTEE CS
       Big_7  13 tvsggtvtisasAsddggvskVefyvdgtl 42 
                 t++g+t+t++++ sd   +++V+  +++++
  CCD24806.1  83 TLTGKTITLEVESSDT--IDNVKSKIQDKE 110
                 6678899999999998..888888877766 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.052
                 -EBTSEEEEEEEEE-SS-EEEEEEEETTEE CS
       Big_7  13 tvsggtvtisasAsddggvskVefyvdgtl 42 
                 t++g+t+t++++ sd   +++V+  +++++
  CCD24806.1 159 TLTGKTITLEVESSDT--IDNVKSKIQDKE 186
                 6678899999999998..888888877766 PP

>> YcgR_2  Flagellar protein YcgR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1      0.03        19       3      26 ..      10      33 ..       9      45 .. 0.89
   2 ?    5.5   0.1      0.03        19       3      26 ..      86     109 ..      85     121 .. 0.89
   3 ?    5.5   0.1      0.03        19       3      26 ..     162     185 ..     161     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.03
                TSEEEEEEEETTEEEEEEEEEEEE CS
      YcgR_2  3 Gdkveieiesgdgekryksrvvdi 26
                G+ +++e+es+d   ++ks+++d 
  CCD24806.1 10 GKTITLEVESSDTIDNVKSKIQDK 33
                899***********99******85 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.03
                 TSEEEEEEEETTEEEEEEEEEEEE CS
      YcgR_2   3 Gdkveieiesgdgekryksrvvdi 26 
                 G+ +++e+es+d   ++ks+++d 
  CCD24806.1  86 GKTITLEVESSDTIDNVKSKIQDK 109
                 899***********99******85 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.03
                 TSEEEEEEEETTEEEEEEEEEEEE CS
      YcgR_2   3 Gdkveieiesgdgekryksrvvdi 26 
                 G+ +++e+es+d   ++ks+++d 
  CCD24806.1 162 GKTITLEVESSDTIDNVKSKIQDK 185
                 899***********99******85 PP

>> UDP-g_GGTase  UDP-glucose:Glycoprotein Glucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.7   1.1e+03      81      99 ..       2      20 ..       1      28 [. 0.82
   2 !    7.4   0.0     0.007       4.5      52     100 ..      49      97 ..      48     104 .. 0.84
   3 !    7.4   0.0     0.007       4.5      52     100 ..     125     173 ..     124     180 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.7
                  EEEE-STT-EEE--EEEE- CS
  UDP-g_GGTase 81 evvltsfegktlyprvkrk 99
                  ++++++++gkt++++v+  
    CCD24806.1  2 QIFVKTLTGKTITLEVESS 20
                  689999******9999876 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.007
                   EE-TTHHHHHEEEEE--SS-S--TT----EEEE-STT-EEE--EEEE-T CS
  UDP-g_GGTase  52 elregrssdiyeiesvgaeglsspkdegkevvltsfegktlyprvkrkp 100
                   +l++gr+ + y+i++ ++ +l  + + g ++++++++gkt++++v+  +
    CCD24806.1  49 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 97 
                   5889**********99999865555679***************998765 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.007
                   EE-TTHHHHHEEEEE--SS-S--TT----EEEE-STT-EEE--EEEE-T CS
  UDP-g_GGTase  52 elregrssdiyeiesvgaeglsspkdegkevvltsfegktlyprvkrkp 100
                   +l++gr+ + y+i++ ++ +l  + + g ++++++++gkt++++v+  +
    CCD24806.1 125 QLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 173
                   5889**********99999865555679***************998765 PP

>> DUF969  Protein of unknown function (DUF969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.023        15      70     117 ..      32      79 ..      28      86 .. 0.88
   2 ?    5.0   0.0     0.023        15      70     117 ..     108     155 ..     104     162 .. 0.88
   3 ?    2.1   0.0      0.17   1.1e+02      70     113 ..     184     227 ..     180     229 .] 0.90

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.023
      DUF969  70 eraGLkeraaklikkikkatagrlllvYllirelaaalglslgGhaqf 117
                 ++ G+    ++li   k++  gr l+ Y + +e +  l l+l G  q+
  CCD24806.1  32 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQI 79 
                 67888889999*****************************99887774 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.023
      DUF969  70 eraGLkeraaklikkikkatagrlllvYllirelaaalglslgGhaqf 117
                 ++ G+    ++li   k++  gr l+ Y + +e +  l l+l G  q+
  CCD24806.1 108 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQI 155
                 67888889999*****************************99887774 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.17
      DUF969  70 eraGLkeraaklikkikkatagrlllvYllirelaaalglslgG 113
                 ++ G+    ++li   k++  gr l+ Y + +e +  l l+l G
  CCD24806.1 184 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 227
                 67888889999***************************999988 PP

>> DUF493  Protein of unknown function (DUF493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.15        95      56      79 ..      12      35 ..       7      37 .. 0.89
   2 ?    3.7   0.0      0.15        95      56      79 ..      88     111 ..      83     113 .. 0.89
   3 ?    3.7   0.0      0.15        95      56      79 ..     164     187 ..     159     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.15
      DUF493 56 tvtvrveseeqldalyqeLkahpr 79
                t+t++ves++ +d++ +++++ + 
  CCD24806.1 12 TITLEVESSDTIDNVKSKIQDKEG 35
                89**************99999876 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.15
      DUF493  56 tvtvrveseeqldalyqeLkahpr 79 
                 t+t++ves++ +d++ +++++ + 
  CCD24806.1  88 TITLEVESSDTIDNVKSKIQDKEG 111
                 89**************99999876 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.15
      DUF493  56 tvtvrveseeqldalyqeLkahpr 79 
                 t+t++ves++ +d++ +++++ + 
  CCD24806.1 164 TITLEVESSDTIDNVKSKIQDKEG 187
                 89**************99999876 PP

>> Raf1_HTH  Rubisco accumulation factor 1 helix turn helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.11        71      34      55 ..      28      49 ..      26      52 .. 0.88
   2 ?    3.2   0.0      0.11        71      34      55 ..     104     125 ..     102     128 .. 0.88
   3 ?    3.2   0.0      0.11        71      34      55 ..     180     201 ..     178     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.11
    Raf1_HTH 34 qeIfEaTGiepvqQnqliVaaq 55
                ++I ++ Gi p qQ ++  + q
  CCD24806.1 28 SKIQDKEGIPPDQQRLIFAGKQ 49
                6899***********9998877 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.11
    Raf1_HTH  34 qeIfEaTGiepvqQnqliVaaq 55 
                 ++I ++ Gi p qQ ++  + q
  CCD24806.1 104 SKIQDKEGIPPDQQRLIFAGKQ 125
                 6899***********9998877 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.11
    Raf1_HTH  34 qeIfEaTGiepvqQnqliVaaq 55 
                 ++I ++ Gi p qQ ++  + q
  CCD24806.1 180 SKIQDKEGIPPDQQRLIFAGKQ 201
                 6899***********9998877 PP

>> ACT_4  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.16        99      51      75 ..      12      36 ..       6      37 .. 0.86
   2 ?    3.7   0.0      0.15        96      51      75 ..      88     112 ..      81     113 .. 0.86
   3 ?    3.7   0.0      0.15        96      51      75 ..     164     188 ..     157     189 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.16
       ACT_4 51 kitveVkdvehLsrviakLraipgV 75
                +it+eV++++ +++v  k++  +g+
  CCD24806.1 12 TITLEVESSDTIDNVKSKIQDKEGI 36
                69****************9976665 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.15
       ACT_4  51 kitveVkdvehLsrviakLraipgV 75 
                 +it+eV++++ +++v  k++  +g+
  CCD24806.1  88 TITLEVESSDTIDNVKSKIQDKEGI 112
                 69****************9976665 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.15
       ACT_4  51 kitveVkdvehLsrviakLraipgV 75 
                 +it+eV++++ +++v  k++  +g+
  CCD24806.1 164 TITLEVESSDTIDNVKSKIQDKEGI 188
                 69****************9976665 PP

>> ORF11CD3  ORF11CD3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.096        62      24      50 ..      53      79 ..      52      81 .. 0.93
   2 ?    3.8   0.0     0.096        62      24      50 ..     129     155 ..     128     157 .. 0.93
   3 ?    0.4   0.0       1.2   7.5e+02      24      38 ..     205     219 ..     204     227 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.096
    ORF11CD3 24 GrgLsewKqkKpqltqkveeLeeklQl 50
                Gr+Ls++ ++K   +  v +L+  +Q+
  CCD24806.1 53 GRTLSDYNIQKESTLHLVLRLRGGMQI 79
                9************99999999999997 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.096
    ORF11CD3  24 GrgLsewKqkKpqltqkveeLeeklQl 50 
                 Gr+Ls++ ++K   +  v +L+  +Q+
  CCD24806.1 129 GRTLSDYNIQKESTLHLVLRLRGGMQI 155
                 9************99999999999997 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.2
    ORF11CD3  24 GrgLsewKqkKpqlt 38 
                 Gr+Ls++ ++K   +
  CCD24806.1 205 GRTLSDYNIQKESTL 219
                 9******99986655 PP

>> ProRS-C_2  Prolyl-tRNA synthetase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1      0.11        72       7      26 ..      17      36 ..      12      37 .. 0.80
   2 ?    3.6   0.1      0.11        72       7      26 ..      93     112 ..      88     113 .. 0.80
   3 ?    3.6   0.1      0.11        72       7      26 ..     169     188 ..     164     189 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.11
                --....HHHHHHHCTTT-SE CS
   ProRS-C_2  7 envnlllenikeklsekkGv 26
                +++    +n+k k+++k G+
  CCD24806.1 17 VESSDTIDNVKSKIQDKEGI 36
                5567789**********997 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.11
                 --....HHHHHHHCTTT-SE CS
   ProRS-C_2   7 envnlllenikeklsekkGv 26 
                 +++    +n+k k+++k G+
  CCD24806.1  93 VESSDTIDNVKSKIQDKEGI 112
                 5567789**********997 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.11
                 --....HHHHHHHCTTT-SE CS
   ProRS-C_2   7 envnlllenikeklsekkGv 26 
                 +++    +n+k k+++k G+
  CCD24806.1 169 VESSDTIDNVKSKIQDKEGI 188
                 5567789**********997 PP

>> Tash_PEST  Tash protein PEST motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.4     0.007       4.5       7      16 ..      12      21 ..      12      21 .. 0.96
   2 ?    7.6   1.4     0.007       4.5       7      16 ..      88      97 ..      88      97 .. 0.96
   3 ?    7.6   1.4     0.007       4.5       7      16 ..     164     173 ..     164     173 .. 0.96

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.007
   Tash_PEST  7 TIpVEigSDe 16
                TI++E++S++
  CCD24806.1 12 TITLEVESSD 21
                9*******98 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.007
   Tash_PEST  7 TIpVEigSDe 16
                TI++E++S++
  CCD24806.1 88 TITLEVESSD 97
                9*******98 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.007
   Tash_PEST   7 TIpVEigSDe 16 
                 TI++E++S++
  CCD24806.1 164 TITLEVESSD 173
                 9*******98 PP

>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.34   2.2e+02      28      38 ..       5      15 ..       2      17 .. 0.86
   2 ?    3.3   0.0      0.12        76      25      38 ..      77      91 ..      70      92 .. 0.79
   3 ?    3.3   0.0      0.12        76      25      38 ..     153     167 ..     146     168 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.34
                EEETTSEEEEE CS
    Myosin_N 28 VetedGktvtV 38
                V+t +Gkt t+
  CCD24806.1  5 VKTLTGKTITL 15
                9*******995 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.12
                E.EEEEETTSEEEEE CS
    Myosin_N 25 k.vtVetedGktvtV 38
                + + V+t +Gkt t+
  CCD24806.1 77 MqIFVKTLTGKTITL 91
                4488********995 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.12
                 E.EEEEETTSEEEEE CS
    Myosin_N  25 k.vtVetedGktvtV 38 
                 + + V+t +Gkt t+
  CCD24806.1 153 MqIFVKTLTGKTITL 167
                 4488********995 PP

>> DMA  DMRTA motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.17   1.1e+02      14      24 ..      62      72 ..      60      76 .. 0.87
   2 ?    2.5   0.0      0.17   1.1e+02      14      24 ..     138     148 ..     136     152 .. 0.87
   3 ?    2.5   0.0      0.17   1.1e+02      14      24 ..     214     224 ..     212     228 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.17
         DMA 14 hkrsvLelvLq 24
                +k s+L+lvL+
  CCD24806.1 62 QKESTLHLVLR 72
                89********8 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.17
         DMA  14 hkrsvLelvLq 24 
                 +k s+L+lvL+
  CCD24806.1 138 QKESTLHLVLR 148
                 89********8 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.17
         DMA  14 hkrsvLelvLq 24 
                 +k s+L+lvL+
  CCD24806.1 214 QKESTLHLVLR 224
                 89********8 PP

>> Plexin_cytopl  Plexin cytoplasmic RasGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.2     0.033        21     200     223 ..       9      32 ..       1      35 [. 0.83
   2 ?    4.6   0.4     0.016        10     200     223 ..      85     108 ..      51     110 .. 0.70
   3 ?    4.9   0.4     0.013       8.3     199     223 ..     157     184 ..     124     194 .. 0.72
   4 ?   -2.2   0.0       1.8   1.2e+03     271     289 ..     206     224 ..     190     226 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.033
                    ---EEEEEEETT-BHHHHHHHHHH CS
  Plexin_cytopl 200 esekvevkvldcDtitQvkeKild 223
                      ++++++v + Dti+ vk+Ki d
     CCD24806.1   9 TGKTITLEVESSDTIDNVKSKIQD 32 
                    5678999**************976 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.016
                    ---EEEEEEETT-BHHHHHHHHHH CS
  Plexin_cytopl 200 esekvevkvldcDtitQvkeKild 223
                      ++++++v + Dti+ vk+Ki d
     CCD24806.1  85 TGKTITLEVESSDTIDNVKSKIQD 108
                    778899999************976 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.013
                    -...---EEEEEEETT-BHHHHHHHHHH CS
  Plexin_cytopl 199 e...esekvevkvldcDtitQvkeKild 223
                          ++++++v + Dti+ vk+Ki d
     CCD24806.1 157 VktlTGKTITLEVESSDTIDNVKSKIQD 184
                    1333778899999999999999999976 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.8
                    -BTTTTT--TTEEEEEE-T CS
  Plexin_cytopl 271 nTlahYkvsdgavlalvkk 289
                     Tl++Y+++ +++l+lv +
     CCD24806.1 206 RTLSDYNIQKESTLHLVLR 224
                    6999*****9999999865 PP

>> PI3K_p85B  PI3-kinase family, p85-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1       0.1        67       1      18 [.      13      30 ..      13      33 .. 0.92
   2 ?    3.3   0.1       0.1        67       1      18 [.      89     106 ..      89     109 .. 0.92
   3 ?    3.3   0.1       0.1        67       1      18 [.     165     182 ..     165     185 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.1
   PI3K_p85B  1 itlrvsreatLseiKeeL 18
                itl+v+++ t++++K+++
  CCD24806.1 13 ITLEVESSDTIDNVKSKI 30
                89*************986 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.1
   PI3K_p85B   1 itlrvsreatLseiKeeL 18 
                 itl+v+++ t++++K+++
  CCD24806.1  89 ITLEVESSDTIDNVKSKI 106
                 89*************986 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.1
   PI3K_p85B   1 itlrvsreatLseiKeeL 18 
                 itl+v+++ t++++K+++
  CCD24806.1 165 ITLEVESSDTIDNVKSKI 182
                 89*************986 PP

>> FlgD_ig  FlgD Ig-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1      0.19   1.2e+02       6      34 ..       7      35 ..       4      36 .. 0.84
   2 ?    2.6   0.1      0.19   1.2e+02       6      34 ..      83     111 ..      80     112 .. 0.84
   3 ?    2.6   0.1      0.19   1.2e+02       6      34 ..     159     187 ..     156     188 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.19
                E-SS--EEEEEE.ESSSEEEEEEEE-SS- CS
     FlgD_ig  6 llgdgeaplgvelpeaadevtvtikDasG 34
                +l++++  l+ve ++ +d+v+ +i+D++G
  CCD24806.1  7 TLTGKTITLEVESSDTIDNVKSKIQDKEG 35
                456777788899**************998 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.19
                 E-SS--EEEEEE.ESSSEEEEEEEE-SS- CS
     FlgD_ig   6 llgdgeaplgvelpeaadevtvtikDasG 34 
                 +l++++  l+ve ++ +d+v+ +i+D++G
  CCD24806.1  83 TLTGKTITLEVESSDTIDNVKSKIQDKEG 111
                 456777788899**************998 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.19
                 E-SS--EEEEEE.ESSSEEEEEEEE-SS- CS
     FlgD_ig   6 llgdgeaplgvelpeaadevtvtikDasG 34 
                 +l++++  l+ve ++ +d+v+ +i+D++G
  CCD24806.1 159 TLTGKTITLEVESSDTIDNVKSKIQDKEG 187
                 456777788899**************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       214  (0.011936); expected 358.6 (0.02)
Passed bias filter:                      154  (0.00858944); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1633.96
//
Query:       CCD24807.1  [L=3121]
Description: hypothetical protein NDAI_0D04940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-90  302.6  10.2    7.1e-86  287.9   1.1    3.5  3  SHR-BD         SHR-binding domain of vacuolar-sorting associa
    6.2e-73  245.1   1.2    6.2e-73  245.1   1.2    6.0  6  VPS13_mid_rpt  Repeating coiled region of VPS13
    9.3e-69  230.8  12.6    8.6e-67  224.3   0.7    3.6  3  VPS13_C        Vacuolar-sorting-associated 13 protein C-termi
    3.6e-68  229.9  13.0    5.7e-67  226.0   3.5    3.7  3  VPS13          Vacuolar sorting-associated protein 13, N-term
      3e-35  120.8   0.2    1.2e-34  118.9   0.2    2.2  1  Chorein_N      N-terminal region of Chorein or VPS13
  ------ inclusion threshold ------
       0.17   12.3   0.1       0.85   10.0   0.0    2.2  2  ATG_C          Autophagy-related protein C terminal domain


Domain annotation for each model (and alignments):
>> SHR-BD  SHR-binding domain of vacuolar-sorting associated protein 13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.4   7.6e-06     0.023       8     174 ..    1854    2029 ..    1851    2062 .. 0.77
   2 !    4.9   0.1     0.005        15     113     173 ..    2079    2143 ..    2073    2168 .. 0.82
   3 !  287.9   1.1   2.4e-89   7.1e-86       3     271 .]    2189    2469 ..    2188    2469 .. 0.98

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 7.6e-06
      SHR-BD    8 pywllNkTglpLevrqednsneaa..gqleee.....eearsltpllfSfddrdtknraqlrignskwskpfsldaigetnevelrsaekesevy.. 95  
                  py+l+N Tg +L+v  ++++n+ +  +++ ++      e ++ +++   +d++++k+    +i ns+++  +s+da  e + ++l ++  +  v+  
  CCD24807.1 1854 PYLLINDTGFDLSVWIKATQNTERngSTVLKNgerlpWEFEDWKNIREKLDTDNKKSVLGVSILNSNYTTTLSIDATYEGELLHLLKPAVNH-VHnr 1949
                  9***********99766555444310445544776653567888888999999999999****************************99975.4435 PP

      SHR-BD   96 iGisveegrgkykltkiVtiaPRyilkNklsekleiaqrgs..kkvielkpgeliplhwlrnke.ekelvirlpes.nsqwSg 174 
                  i  +++ ++++    k++t+ +  +l+N++    e+  + +   ++i+l+ g +  ++ + n+  + ++ ir ++s n +wS+
  CCD24807.1 1950 IITELKCAEDNI---KMITFRSTMLLENNTHTGFEVLVEDTtnGETITLSIGTSESRSIPVNVVyNANIRIRPMSSiNFEWSK 2029
                  777777777766...*************9988777665555324445777777777777766541577888877777888886 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.005
      SHR-BD  113 VtiaPRyilkNklsekleiaqrgs....kkvielkpgeliplhwlrnkeekelvirlpesnsqwS 173 
                  Vti+P  i++N l+++++++  ++    k+++ lk++e + +h  + +    l+++   +n+ +S
  CCD24807.1 2079 VTISPSLIIENLLPCDINFCLFSKkedmKTFKFLKEKEETYIHHASLDDFLLLSVQPLLENNPLS 2143
                  9******************9998866655667888888888888777777777777766666555 PP

  == domain 3  score: 287.9 bits;  conditional E-value: 2.4e-89
      SHR-BD    3 isIyapywllNkTglpLevrqednsneaagqleeeeearsltpllfSfdd.rdtknraqlrignskwskpfsldaigetnevelrsaekesevyiGi 98  
                  + Iy+py++lN+T+ +L+++  d sn a++++ +ee++r++ p +fSf++  +++nra++++++++ws p+s+da+g+t + +l +++ke+e+++G+
  CCD24807.1 2189 LRIYSPYIILNRTDRDLYIQR-DLSNIAQSKITDEEGKRKSAPKMFSFEQlHNKNNRAMIKFRETEWSIPLSFDAVGQTVDTTLAITNKEQEYNLGL 2284
                  57*****************99.666*********9***************99**************************************9****** PP

      SHR-BD   99 sveegrgkykltkiVtiaPRyilkNklsekleiaqrgskkvielkpgeliplhwlrnkeekelvirlpesnsqwSggfnisdvgslyvklrrqnseq 195 
                  +++eg+g ++l++i++++PR+i+kN ls+++ei++ gs +++ ++p++  pl++lrn+ +k+++i+l ++ s+wS  f+i+d+g +y+k+ ++n+ +
  CCD24807.1 2285 NITEGHGAFALSTIIEVTPRFIFKNGLSIPIEICEAGSVNIQVVEPQQISPLYKLRNVLNKKICIKLVGQLSDWSPSFFINDIGITYLKVLQENNTH 2381
                  ************************************************************************************************* PP

      SHR-BD  196 vllkveiiledatifikiedaeknewPfsirNeseveilfyqrdpelnsd.............eskplkytlppksvmpYawDePtakq 271 
                   llk+ei+l++at+fi+++d +++ wPfsirN+s+ e++fyqrd++l +d             e++pl+y++pp+svmpYawD+P+a+q
  CCD24807.1 2382 MLLKIEIVLQGATVFIQLKDGDNK-WPFSIRNFSDYEFIFYQRDIKLIDDyyendpsedvtdtEYTPLYYRVPPRSVMPYAWDYPAARQ 2469
                  ************************.*************************************************************986 PP

>> VPS13_mid_rpt  Repeating coiled region of VPS13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.24     7e+02     126     162 ..     131     170 ..     119     204 .. 0.68
   2 ?   -2.6   0.0         1   3.1e+03     166     227 ..     261     320 ..     239     325 .. 0.67
   3 !  245.1   1.2   2.1e-76   6.2e-73       1     234 [.     604     838 ..     604     838 .. 0.98
   4 ?    3.1   0.2     0.018        53       8      93 ..    1145    1218 ..    1138    1265 .. 0.60
   5 !    4.5   0.1    0.0069        21     165     231 ..    1265    1331 ..    1249    1334 .. 0.69
   6 ?   -1.5   0.8      0.45   1.3e+03     118     209 ..    1513    1640 ..    1489    1663 .. 0.58

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.24
  VPS13_mid_rpt 126 ikskskqqyseed...leeleelmYDkfslklsdtqvllg 162
                     +s+s+qq++++d   +++l  ++ D+++++++++ + + 
     CCD24807.1 131 PSSSSQQQQNNNDtsfTQSLVTKIIDNLQVTIKNIHIRYE 170
                    2222223333333456899999999*******99977554 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1
  VPS13_mid_rpt 166 edwkealsedssklhilepinlkltleksivpkalnlpkfkvsgelpslevnlsdkkykslm 227
                    +++ +++   s + ++l+pi+++ +l   ++ +  + p++ ++ +  ++ v+l+d+ y sl+
     CCD24807.1 261 SETDNQRI--SYNEYLLNPIDAEGKLIVNKAGTTKERPHTDLELSCNEFGVSLNDSVYASLL 320
                    22222222..2345699999998777777777777888999999999999999999999887 PP

  == domain 3  score: 245.1 bits;  conditional E-value: 2.1e-76
  VPS13_mid_rpt   1 fetnPldekadqrlsiklrpleiiYdaetveevvkffkppksvlesvealssaasstleelkeqtragleyaleehktldlkidlqapliiiPesi 96 
                    fe+nPld+ a ++l+iklr ++i+Y+++++ ev++ff+ppk++les+ al  aa+st+ ++++q+r+g+e +leehkt++l +dlq+pl+++P ++
     CCD24807.1 604 FESNPLDGIAHSNLNIKLRGMTIFYHVHFLTEVINFFTPPKQHLESMVALLGAAESTI-GWTNQSRMGIETILEEHKTVNLMLDLQSPLVVVPLDP 698
                    9***************************************************999998.9************************************ PP

  VPS13_mid_rpt  97 teeessllvlDlGhlsveselvdksaikeikskskqqyseedleeleelmYDkfslklsdtqvllgdsgedwkeals.ed.ssklhilepinlklt 190
                    + +e++++++D+Gh+sv s+ v+k++i+e+k+++ ++y++ d +e+++lmYD+f+++ +dtqv++g++ ++  ++l+ ++  ++l+il++++l++ 
     CCD24807.1 699 HVWETPCAIIDAGHISVASQVVPKNKINELKDMEAEEYERMDANEISRLMYDRFKVSSQDTQVIIGSNLQSLLSSLNdQEtLDNLNILKKMSLDII 794
                    *****************************************************************************6334678************ PP

  VPS13_mid_rpt 191 leksivpkalnlpkfkvsgelpslevnlsdkkykslmelidtsi 234
                    l++ i+ kal+lpk+++sg+lp+l ++l+d +yk +++l+d+++
     CCD24807.1 795 LDTLILGKALQLPKLRLSGHLPKLLLSLNDYQYKMMLQLLDKCV 838
                    *****************************************996 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.018
  VPS13_mid_rpt    8 ekadqrlsiklrpleiiYdaetveevvkffkppksvlesvealssaasstleelkeqtragleyaleehktldlkidlqapliiiP 93  
                     +++++ l++   ++++ ++   ++++++ f + ++ +  ++   +aa ++  ++             + + ++++i + apli  P
     CCD24807.1 1145 KDYNSFLKLVTGSMHVNFNESSFQKLMNYFYKFQKMKTFFDSARQAAYNQAPSIE------------TVNDMKMDILISAPLIRFP 1218
                     5566666667777777777777777777666555555455555555555555555............4555555555555555555 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.0069
  VPS13_mid_rpt  165 gedwkealsed.ssklhilepinlkltleksivpkalnlpkfkvsgelpslevnlsdkkykslmelid 231 
                       +    l++  +++l++++++ l +++  s      nl+kf +s  ++ le++ ++ ++  l+++i+
     CCD24807.1 1265 RMSSILNLTNGeEQHLYMVHNMALIFDIIHSQGVG-ENLTKFNISSYFDPLEIKATELQLAYLVNVIN 1331
                     44444444444245556666666666655555444.79***************************995 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 0.45
  VPS13_mid_rpt  118 vdksaikeikskskqqyseed...leeleelmYDkfslklsdt.......................qvllgdsgedwkeals..........ed 175 
                     v+k + ++++++ k  y++++   +ee ++   Dkf+ +++ +                       q+ll+ ++ +  +a +          ed
     CCD24807.1 1513 VNKLTTSDVHKQIKVDYESNNmleIEESSSPSNDKFQYSINIIdtsvilladptdidsdavvfsvgQFLLAAQNLTNISANNvglfltklnsED 1606
                     6666666666666666666654446666666777777666555556666666666666666666665555444444333333344444443322 PP

  VPS13_mid_rpt  176 ssklhilepinlkltleksivpkalnlpkfkvsg 209 
                     + kl++l+ ++ +lt+++   + +  l+ +  s+
     CCD24807.1 1607 DYKLRVLDDFSSSLTIDQRDSTAEKLLTLINFSI 1640
                     5557788888888888776666655665555544 PP

>> VPS13_C  Vacuolar-sorting-associated 13 protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.3       3.1   9.2e+03      27      53 ..     136     165 ..     124     169 .. 0.42
   2 !  224.3   0.7   2.9e-70   8.6e-67       1     178 []    2721    2896 ..    2721    2896 .. 0.96
   3 !   13.3   0.7   1.7e-05     0.052     107     170 ..    2919    2983 ..    2917    2988 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.1
     VPS13_C  27 eesleke........qsllslllllnslgvtltni 53 
                 +++   +        qsl++ +  +++l vt+ ni
  CCD24807.1 136 QQQ---QnnndtsftQSLVTKI--IDNLQVTIKNI 165
                 111...1111222223333333..66666666665 PP

  == domain 2  score: 224.3 bits;  conditional E-value: 2.9e-70
     VPS13_C    1 kiYfeklhlqPiklhlsfslsekknkeeslekeqsllslllllnslgvtltniddapikLnalelenvflslesliekikkhYsqqllkqlykilgs 97  
                  +iYfe +h+qP+ lhlsf ++e+ n+ +++    + l  l ++n+l+++++n++dapikLn+l+++nv+++l+ li+++k+hYsqq+++q++kilgs
  CCD24807.1 2721 DIYFEIFHIQPTLLHLSFARTERLNTANDQP---TELGSLFFINMLTMAIGNVNDAPIKLNSLYMDNVRVPLPVLISSMKTHYSQQFFYQIHKILGS 2814
                  69***********************998554...44444448******************************************************* PP

     VPS13_C   98 ldvlGNPvglfnnissGvkdlfyePiqglvkg..peefgeglakGaksLvkktvfGvadsvskitgsvskglaaltmDeeYqe 178 
                  +d+lGNPvglfn+issGv+dlfyeP+qg++++  p+e+g++lakG +s++kktvfG++ds++k+t sv+kgl++ t+D+++qe
  CCD24807.1 2815 ADFLGNPVGLFNTISSGVWDLFYEPYQGYMMNdrPQEIGIHLAKGGASFAKKTVFGLSDSMAKLTSSVAKGLSV-TQDSSFQE 2896
                  *******************************99****************************************9.******96 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 1.7e-05
     VPS13_C  107 lfnnissGvkdlfyePiqglvkg.peefgeglakGaksLvkktvfGvadsvskitgsvskglaal 170 
                  + ++++sG++    +P++++ k+  + f++gl kG   L +kt  G+ d +s++++ v+++ ++l
  CCD24807.1 2919 FATTLGSGFSGVALDPYKAAQKEgASGFFKGLGKGLIGLPTKTAIGFLDLTSNLSQGVKSTTTVL 2983
                  57899*****************88******************************99998877765 PP

>> VPS13  Vacuolar sorting-associated protein 13, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.0   3.5   1.9e-70   5.7e-67       1     234 [.     146     389 ..     146     391 .. 0.93
   2 !    6.8   0.2    0.0017       5.1     115     171 ..     780     837 ..     714     862 .. 0.68
   3 ?    1.3   0.1     0.083   2.5e+02      99     173 ..    1262    1335 ..    1127    1343 .. 0.75

  Alignments for each domain:
  == domain 1  score: 226.0 bits;  conditional E-value: 1.9e-70
       VPS13   1 FlesLiakIldNlqvtiknvHiryeDslsvp.grpfalGitLesLsaqstdenwkptfikgeeseekivyKlvelesLavYwdsdsse...dksledls 95 
                 F++sL++kI+dNlqvtikn+HiryeD  sv  + p+a+G+tL++Lsa+st+e+w+p+fi+    ++ i++Kl++l+s+++Yw++++++   d+ + +++
  CCD24807.1 146 FTQSLVTKIIDNLQVTIKNIHIRYEDMDSVFsKDPCAFGLTLKQLSAVSTNEDWEPSFIEL---TQIITHKLLTLDSFSAYWNTNATSlleDEMIPEIT 241
                 99*************************776647****************************...999*****************994456677778888 PP

       VPS13  96 leeleeafessikekseka........krhqYiLkPvsgeaklklnkkgetd.apklkldleldevgltLseeqyrdilklleslsrlerreeyrklrP 185
                  e+l++ +++  +++se++        +  +Y+L+P+++e+kl +nk g+t+ +p+ +l+l ++e+g++L+++ y+++l  + +++  + +++y+  rP
  CCD24807.1 242 FENLKSEISNNTSTNSENNsetdnqriSYNEYLLNPIDAEGKLIVNKAGTTKeRPHTDLELSCNEFGVSLNDSVYASLLYSITEIHLNSITQKYKVNRP 340
                 8888888887777777444578888998889***************99999978********************************************* PP

       VPS13 186 kvsvkenpraWWkYaikavleeirekrrkwsweaiaerrdlrkrYvely 234
                 + sv enp+ W+kY++ ++l+ei+ek+++w+w++i++  ++r++Yv+l+
  CCD24807.1 341 EYSVDENPSGWFKYTALCILQEIKEKKQMWTWDNIKKKGEQRRAYVDLW 389
                 ************************************************9 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0017
       VPS13 115 krhqYiLkPvsgeaklklnkkgetd.apklkldleldevgltLseeqyrdilkllesl 171
                  +   iLk +s ++ l     g++   pkl+l+ +l ++ l+L++ qy+ +l+ll+++
  CCD24807.1 780 LDNLNILKKMSLDIILDTLILGKALqLPKLRLSGHLPKLLLSLNDYQYKMMLQLLDKC 837
                 444558888888888855533333336****************************986 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.083
       VPS13   99 leeafessikeksekakrhqYiLkPvsgeaklklnkkgetdapklkldleldevgltLseeqyrdilklleslsr 173 
                   e+ + ssi + ++ +++h Y+++ +   + +  ++   ++  k++++  +d ++++ +e q++ ++++++++++
  CCD24807.1 1262 RESRM-SSILNLTNGEEQHLYMVHNMALIFDIIHSQGVGENLTKFNISSYFDPLEIKATELQLAYLVNVINAVQN 1335
                  22222.233333344599**************99988888889********************999999998875 PP

>> Chorein_N  N-terminal region of Chorein or VPS13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.9   0.2   3.9e-38   1.2e-34       1     115 [.       2     115 ..       2     116 .. 0.96

  Alignments for each domain:
  == domain 1  score: 118.9 bits;  conditional E-value: 3.9e-38
   Chorein_N   1 leslvskllnryLgeyvenldrdqlkvslwsGeveLenlkLkkealdklelPfevkegvigklrlkipwsnlkskpvvieiedvyllaeprseseeede 99 
                 lesl+++llnr+Lg+yven+d+ qlk+++wsG++ LenlkL+k++ld lelP++vk+gv+gkl l+++wsnlk+kpv+i+ied+y +++pr++  ++++
  CCD24807.1   2 LESLATTLLNRLLGSYVENFDPAQLKMGIWSGDARLENLKLRKDCLDRLELPIDVKYGVLGKLILNVSWSNLKNKPVKISIEDCYFICSPRTKL-SYNT 99 
                 799****************************************************************************************999.6666 PP

   Chorein_N 100 ekeekreqaakkkkLa 115
                 +++ +r  + k +kLa
  CCD24807.1 100 QEQIERDLRLKLSKLA 115
                 6699999999999987 PP

>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.4   1.3e+04      16      43 ..    1660    1687 ..    1659    1704 .. 0.79
   2 ?   10.0   0.0   0.00028      0.85      15      83 ..    2912    2980 ..    2902    2989 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.4
       ATG_C   16 qqAysslskglksaaqtilavpsevaes 43  
                  ++A+s l+++     q+i++ +  ++e+
  CCD24807.1 1660 NRAVSLLEEKTADSEQAIVKEEEPIYEH 1687
                  689999*************999888886 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00028
       ATG_C   15 lqqAysslskglksaaqtilavpsevaeskgakgavkavvravPvavlrPligateavsktlqGvrnql 83  
                  ++   +s+ + l+s  + +   p + a+++ga+g++k++ + +  +  + +ig  + +s++ qGv+ + 
  CCD24807.1 2912 FATSAQSFATTLGSGFSGVALDPYKAAQKEGASGFFKGLGKGLIGLPTKTAIGFLDLTSNLSQGVKSTT 2980
                  667789999999999999***********************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.37u 0.31s 00:00:01.68 Elapsed: 00:00:00.55
# Mc/sec: 17175.81
//
Query:       CCD24808.1  [L=264]
Description: hypothetical protein NDAI_0D04950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-32  112.3   0.1    1.7e-32  111.6   0.1    1.3  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain
      6e-08   33.1   5.1      6e-08   33.1   5.1    2.2  2  Fer4_17   4Fe-4S dicluster domain
    7.2e-07   29.6   3.8    7.2e-07   29.6   3.8    2.1  2  Fer4_8    4Fe-4S dicluster domain
    9.8e-07   28.8   2.8    9.8e-07   28.8   2.8    2.1  2  Fer4_10   4Fe-4S dicluster domain
    0.00036   21.1   2.6    0.00036   21.1   2.6    2.4  2  Fer4_7    4Fe-4S dicluster domain
     0.0051   16.7   1.5     0.0051   16.7   1.5    2.2  2  Fer2      2Fe-2S iron-sulfur cluster binding domain
  ------ inclusion threshold ------
        9.9    6.4  16.9       0.46   10.7   8.4    2.8  2  Fer4_9    4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   0.1   6.8e-36   1.7e-32       2     108 ..      35     140 ..      34     141 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.6 bits;  conditional E-value: 6.8e-36
      Fer2_3   2 lkvkRfdprrdrgkqkvqeyeveae.eedtvldaLlkikeevdptlafrasCregiCGscavainGkptlaCtatikdlakqkseieleplpkfpvirD 99 
                 +k++R++p+++++k+ +++++v+ +  + +vldaL kik+e d++lafr+sCreg+CGsca++i G++tlaCt +i++  kq+  +++ plp++ +i+D
  CCD24808.1  35 FKIYRWNPDSPAKKPFLETFQVDLDdCGPMVLDALIKIKNEKDSSLAFRRSCREGVCGSCAMNIGGRNTLACTCEIDNNLKQE--TKVYPLPHMFIIKD 131
                 89**********************999***************************************************99997..8************* PP

      Fer2_3 100 LvvDideml 108
                 Lv D ++++
  CCD24808.1 132 LVPDLTNFF 140
                 *****9997 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.6         1   2.7e+03       5      10 ..      91      96 ..      71     123 .. 0.66
   2 !   33.1   5.1   2.3e-11     6e-08       1      61 []     176     249 ..     176     249 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1
     Fer4_17  5 CgyClp 10
                Cg C+ 
  CCD24808.1 91 CGSCAM 96
                333433 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 2.3e-11
     Fer4_17   1 rCiqCgyClpeCpsyeaydne...pkkllraakl.........glleeaeke.ekaslCieCgeCerkCPqgld 61 
                 +Ci C++C  +Cpsy++++++   p+ ll+a+++         ++ +++ ++     +C+ + +C+r CP+gl+
  CCD24808.1 176 ECILCACCSTACPSYWWNQEQylgPAVLLQAYRWlvdsrdqafKERKKMLENaLSLYRCHFILNCTRTCPKGLN 249
                 6****************999666699999999999988885553333333332589***************996 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3  12.4    0.0051        13      28      63 ..     156     189 ..      84     190 .. 0.60
   2 !   29.6   3.8   2.8e-10   7.2e-07       3      64 ..     175     247 ..     172     248 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0051
      Fer4_8  28 argeaaedvqeeqvleeeealwsCttcgaCtevCpv 63 
                 ++g+ +   q+ + ++  ++ ++C  c +C+++Cp 
  CCD24808.1 156 PKGREIL--QSPEDRKRLDGYYECILCACCSTACPS 189
                 3333333..2222223357899************95 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 2.8e-10
      Fer4_8   3 ekCieCgaCqsaCp.............vlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvg 64 
                 ++Ci C +C +aCp             vl +  ++l d+r++a +  +++++le++ +l++C+   +Ct+ Cp+g
  CCD24808.1 175 YECILCACCSTACPsywwnqeqylgpaVLLQAYRWLVDSRDQAFK--ERKKMLENALSLYRCHFILNCTRTCPKG 247
                 58***********87777777777776666666999999999888..44444566889***************98 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2       0.4     1e+03      42      52 ..      83      95 ..      63     107 .. 0.70
   2 !   28.8   2.8   3.8e-10   9.8e-07       8      56 .]     176     245 ..     172     245 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.4
     Fer4_10 42 vekCtg..cgaCv 52
                  +C +  cg+C+
  CCD24808.1 83 RRSCREgvCGSCA 95
                5566666677774 PP

  == domain 2  score: 28.8 bits;  conditional E-value: 3.8e-10
     Fer4_10   8 tCirCgkCvkaCPadl.....................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                  Ci C+ C +aCP+++                     ++++a +e+++  ++   +++C+++ +C++ CP
  CCD24808.1 176 ECILCACCSTACPSYWwnqeqylgpavllqayrwlvdSRDQAFKERKKMLENALSLYRCHFILNCTRTCP 245
                 5**********************************9999999999999999999***************9 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   2.2       2.9   7.5e+03      41      44 ..      91      94 ..      35     108 .. 0.72
   2 !   21.1   2.6   1.4e-07   0.00036       2      51 ..     177     247 ..     176     248 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.9
      Fer4_7 41 CgaC 44
                Cg+C
  CCD24808.1 91 CGSC 94
                4444 PP

  == domain 2  score: 21.1 bits;  conditional E-value: 1.4e-07
      Fer4_7   2 CigCgaCvaaCpvkaieldeeenek..................gtekv...eidpekClgCgaCvavCPtg 51 
                 Ci C  C  aCp+++ + +++  ++                  +++k+   +++  +C +  +C ++CP+g
  CCD24808.1 177 CILCACCSTACPSYWWNQEQYLGPAvllqayrwlvdsrdqafkERKKMlenALSLYRCHFILNCTRTCPKG 247
                 ************999998864333333333333333333333333333444888999************98 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.5     2e-06    0.0051      21      75 ..      67     108 ..      52     120 .. 0.68
   2 ?   -0.1   0.1      0.37   9.5e+02      20      46 ..     162     186 ..     151     206 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2e-06
                 HHHH.....HTTTTTSTTSSSSSSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGS CS
        Fer2  21 daae.....enggidipysCggggCgtClvevlegevqsdetelegeeldegklrlaCqt 75 
                 da+      ++  ++++ sC++g Cg+C+  +             g++       laC++
  CCD24808.1  67 DALIkikneKDSSLAFRRSCREGVCGSCAMNIG------------GRN------TLACTC 108
                 5554444333568999*************9877............444......255554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.37
                 HHHHHHTTTTTSTTSSSSSSSSTTEEE CS
        Fer2  20 ldaaeenggidipysCggggCgtClve 46 
                 l+  e+ + +d  y+C    C+ C + 
  CCD24808.1 162 LQSPEDRKRLDGYYECI--LCACCSTA 186
                 44445444555555665..46666554 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.6      0.72   1.8e+03      35      43 ..      85      95 ..      59     110 .. 0.69
   2 ?   10.7   8.4   0.00018      0.46       1      49 [.     176     247 ..     176     249 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.72
      Fer4_9 35 aCig..CgaCv 43
                +C +  Cg+C+
  CCD24808.1 85 SCREgvCGSCA 95
                46544577775 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00018
      Fer4_9   1 kCtgCgaCveaCpagvv.vedaaerkarlraase......................eaCigCgaCveaCpkg 49 
                 +C+ C  C +aCp+  + +e+  +  + l+a+++                       +C++   C+  Cpkg
  CCD24808.1 176 ECILCACCSTACPSYWWnQEQYLGPAVLLQAYRWlvdsrdqafkerkkmlenalslYRCHFILNCTRTCPKG 247
                 5***********9876647888899999999999********************9999**999*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1842.00
//
Query:       CCD24809.1  [L=160]
Description: hypothetical protein NDAI_0D04960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-11   43.5   0.9    8.4e-11   42.3   0.3    1.9  2  Autophagy_act_C  Autophagocytosis associated protein, active-
  ------ inclusion threshold ------
       0.12   12.2   0.1       0.24   11.2   0.1    1.5  1  Elong-fact-P_C   Elongation factor P, C-terminal


Domain annotation for each model (and alignments):
>> Autophagy_act_C  Autophagocytosis associated protein, active-site domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.39   3.5e+03       1       1 [.      29      29 ..       4      55 .. 0.57
   2 !   42.3   0.3   9.3e-15   8.4e-11       1      55 []      64     133 ..      64     133 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.39
  Autophagy_act_C  1 I 1 
                     I
       CCD24809.1 29 I 29
                     2 PP

  == domain 2  score: 42.3 bits;  conditional E-value: 9.3e-15
  Autophagy_act_C   1 ItYsktYqvPvlyfrlyd........edgtplsleelyed................sadvtieehpl..lgvpwysiHPCk 55 
                      I+Ys +Y++P+l++r+++             +++                      +  + ++ h +  l ++wy+iHPC+
       CCD24809.1  64 IVYSVVYKEPQLLLRVWKyavdetgiT----VKV-----PvfppdikdflnlpawiQ--INLDIHSHdgLAETWYFIHPCD 133
                      9*****************888744441....332.....022333555577755442..555555554499*********7 PP

>> Elong-fact-P_C  Elongation factor P, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   2.7e-05      0.24      20      37 ..      79      96 ..      61      97 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.7e-05
                    TEEEEEETTS-EEEEETT CS
  Elong-fact-P_C 20 gtKpatletGaevqVPlF 37
                    + K a+ etG++v+VP F
      CCD24809.1 79 VWKYAVDETGITVKVPVF 96
                    5799999*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1270.01
//
Query:       CCD24810.1  [L=670]
Description: hypothetical protein NDAI_0D04970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-75  253.2   8.3    3.2e-75  252.7   8.3    1.1  1  MIP       Major intrinsic protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.7   8.3   1.8e-79   3.2e-75       4     227 .]     261     540 ..     257     540 .. 0.96

  Alignments for each domain:
  == domain 1  score: 252.7 bits;  conditional E-value: 1.8e-79
                 CHHHHHHHHHHHHHHHHHHHHHHH..HHHCCCSSCS.............................SSSTTSS.HHHHHHHHHHHHHHHHHHHHHHH..C CS
         MIP   4 svkflravlAEflatlllvfigvg..salnvkkkvs.............................slaslvs.vtleavalafglalavlvylaag..i 68 
                 + + l+++lAEf++t+++++ g++  +++  + k++                             +l s+vs +t++++al+++ a+++++++a+g  i
  CCD24810.1 261 KNSYLKEFLAEFMGTMVMIIYGSAvvCQVLAAGKYQqkqfndalnelqgdadvdtgsikiiqtleNLVSSVSgGTFDDIALGWAGAVVMGYFCAGGsaI 359
                 55679*******************8888888888889*************************998666777789************************* PP

                 HT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH...........HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHC CS
         MIP  69 SGaHlNPavTlallvarkisllrailYivaQllGaivaaallklltkgl...........esraglfanslkpglsagqalvvEiiltfvLvlvvfalt 156
                 SGaHlNP++T+a++++r ++++++++Yi aQllGa+++a++l++ +k++           e +a++f++++kp+ls+ +++++E++++++L+++vf++t
  CCD24810.1 360 SGAHLNPSITIANFIYRGFPAQKVPIYIGAQLLGAFCGALILFIYYKEVivqtyeewwktEAVASMFCVVPKPYLSSSRQFISEFLCGAMLQAGVFGIT 458
                 ************************************************************9************************************** PP

                 STTSSSSTCHGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTH............STTTTHHHHHHHHHHHHHHHHH CS
         MIP 157 ddkrkvslgelaplaigllvaliilvgipltGaamNpArslgpavvlnk............fedhwvylvGPliGailgalvY 227
                 d+++++s ++l+pl++++l+++i+++ +++tG+amN Ar+lgp+++l++            ++++wv++v P+iGai+g+l+Y
  CCD24810.1 459 DPYTCLS-SDLFPLMMFILIFMINASLAYQTGTAMNMARDLGPRLALYAvgfdrkmlwvahHHFFWVPIVSPIIGAIAGGLAY 540
                 *******.*************************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1854  (0.103408); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 4475.69
//
Query:       CCD24811.1  [L=256]
Description: hypothetical protein NDAI_0D04980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-23   81.1   0.3    5.7e-23   80.5   0.3    1.4  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil
    0.00026   21.1   0.1    0.00042   20.4   0.1    1.3  1  RNase_P_pop3    RNase P subunit Pop3


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.3   6.4e-27   5.7e-23       8      89 ..     124     206 ..     117     212 .. 0.86

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 6.4e-27
                     HHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHHHTTEEEEEESCHHHHHHHTTSSSE.CSEEEEEEST CS
  Ribosomal_L7Ae   8 kkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrp.vsalaikdeg 89 
                     +++ k+  ++ Gl++v+ ++e+++aklv++A+dv+p+e + +l+alck+++vpy +vk+k++LG+lv++k+  v+al+ +  +
      CCD24811.1 124 EASPKPYAVKFGLNHVVSLIENKKAKLVLIANDVDPIELVIFLPALCKKMGVPYAIVKGKARLGTLVNQKTSaVAALTEVRSE 206
                     56678889**************************************************************7644444444444 PP

>> RNase_P_pop3  RNase P subunit Pop3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   4.7e-08   0.00042      49     144 ..     125     226 ..     102     232 .. 0.73

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 4.7e-08
  RNase_P_pop3  49 keneeseltvglneivelLecsesddvvllvcnkDtPsvLlsqlpllvavanlt..........vklvqlpksaqakldeklGlskagmllvrkdas 135
                      ++  + +gln +v l+e +++++ vl++ + D P  L+  lp l++   +            +lv+  +sa a l e+   s++++ l +  ++
    CCD24811.1 125 ASPKPYAVKFGLNHVVSLIE-NKKAKLVLIANDVD-PIELVIFLPALCKKMGVPyaivkgkarlGTLVNQKTSAVAALTEV--RSEDEAALAKLVST 217
                   5567889*************.77777777777777.************998876456566655556666667777777777..66677777777777 PP

  RNase_P_pop3 136 ldkklaklv 144
                   +d ++a++ 
    CCD24811.1 218 IDANFADKY 226
                   777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       704  (0.039266); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1866.46
//
Query:       CCD24812.1  [L=186]
Description: hypothetical protein NDAI_0D04990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0044   16.7   0.3     0.0062   16.2   0.3    1.2  1  VasI      Type VI secretion system VasI, EvfG, VC_A0118
  ------ inclusion threshold ------
       0.11   11.3   0.1       0.18   10.7   0.1    1.3  1  FAM198    FAM198 protein
       0.19   11.6  13.3       0.52   10.2   0.5    3.2  3  HSBP1     Heat shock factor binding protein 1


Domain annotation for each model (and alignments):
>> VasI  Type VI secretion system VasI, EvfG, VC_A0118
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3     1e-06    0.0062      85     178 ..      85     180 ..      48     183 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1e-06
        VasI  85 mlsCidnitrleialpkalkssrvtvsl...edktaleqeWrvr.dsglllesgrGlpaielikkllsaerlvlrsn...ngaldgltFdlsglseaik 176
                 +l C d+i +l  +l++  ++s+ ++ +   ++ +a+ ++ ++     +l++ +r      l+k+ll  +r++l+sn   n+++++++F+l+++s++i+
  CCD24812.1  85 VLVCADSIKELLFNLNELEEESEQSINMdsiSNIQAFPEKSTSLtKLPYLFSYSR----LLLMKSLLL-SRFYLKSNyaiNARFQEMQFQLADMSQKID 178
                 688***************9999999988556666777665554438899999999....779999986.5899999999*******************9 PP

        VasI 177 pl 178
                  l
  CCD24812.1 179 DL 180
                 87 PP

>> FAM198  FAM198 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   2.9e-05      0.18     212     286 ..      79     156 ..      51     163 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.9e-05
      FAM198 212 evelahilqrksdpkklvfidnkgrfdrsednlnfrlleGidefPesavsvlksgrl....rkkllqslfldqeyWesq 286
                 ++ l+ +l+     k+l+f  n+   ++se+ +n   +  i+ fPe++ s+ k   l    r  l++sl l + y +s+
  CCD24812.1  79 TLPLQTVLVCADSIKELLFNLNE-LEEESEQSINMDSISNIQAFPEKSTSLTKLPYLfsysRLLLMKSLLLSRFYLKSN 156
                 56788888888888888876555.668899********************9987555333377899*******999886 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.5   8.6e-05      0.52      21      46 ..       1      26 [.       1      28 [. 0.91
   2 ?   -1.6   0.2      0.42   2.5e+03      39      49 ..      62      72 ..      56      74 .. 0.70
   3 ?    8.1   2.2   0.00039       2.3      16      43 ..     161     184 ..     158     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8.6e-05
       HSBP1 21 msdqilsriDdMssriDdLEksiadl 46
                m ++i + +D ++ r+D LE+si d+
  CCD24812.1  1 MKENISEILDLLEARVDILEQSIGDV 26
                78899999***************996 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.42
       HSBP1 39 LEksiadlmtq 49
                L ksi+++ +q
  CCD24812.1 62 LNKSISTMDEQ 72
                66777777766 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00039
       HSBP1  16 dkFqtmsdqilsriDdMssriDdLEksi 43 
                  +Fq+m  q    + dMs++iDdL ++i
  CCD24812.1 161 ARFQEMQFQ----LADMSQKIDDLINTI 184
                 678877766....579*******96666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       774  (0.0431703); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1425.85
//
Query:       CCD24813.1  [L=698]
Description: hypothetical protein NDAI_0D05000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-26   92.0  13.8    2.9e-26   92.0  13.8    2.5  2  Ferric_reduct  Ferric reductase like transmembrane component
    6.2e-20   71.3   0.0    1.1e-19   70.5   0.0    1.4  1  FAD_binding_8  FAD-binding domain
    1.1e-19   71.1   0.0    2.2e-19   70.1   0.0    1.5  1  NAD_binding_6  Ferric reductase NAD binding domain
     0.0067   16.7   2.5        1.8    8.9   0.0    3.4  3  MLANA          Protein melan-A


Domain annotation for each model (and alignments):
>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.4     0.053   2.4e+02      80     117 ..     157     195 ..     129     199 .. 0.67
   2 !   92.0  13.8   6.4e-30   2.9e-26       1     123 [.     273     388 ..     273     390 .. 0.96

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.053
  Ferric_reduct  80 nllGvl..alllliilaitSlkfirrrlsyelFyylHhll 117
                    n++G+l  +++l+++l+++ ++++  r +++  ++ H ++
     CCD24813.1 157 NYYGLLlcSYFLFVLLVASCFQYWD-RTGFNAVLFKHKFF 195
                    4455441156677777777788888.88888877777766 PP

  == domain 2  score: 92.0 bits;  conditional E-value: 6.4e-30
  Ferric_reduct   1 lGiaalillplalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilait 96 
                    +Gi+a+++lpl++l+++Rnn++e  tg++++++++fHkw+g++++l ++lH+++y+++++        ++l+   k++y+++G++a++++i+++i+
     CCD24813.1 273 TGIMAFAQLPLIILFSTRNNIFEYFTGFKYSTFIMFHKWIGRTMVLDLILHAFAYTIYAVN------YKNLSHSSKQSYFQFGIVACFIAILMIIL 362
                    69**********************************************************8......5689999********************** PP

  Ferric_reduct  97 SlkfirrrlsyelFyylHhllyvayll 123
                    S+++ir +++ye+F+y+H++l++++++
     CCD24813.1 363 SIGLIR-KNFYETFLYSHIILAILFFY 388
                    ******.999*************9986 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   2.5e-23   1.1e-19       3     108 ..     425     522 ..     423     523 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 2.5e-23
  FAD_binding_8   3 nvskakvalleedliklkvskpkks.lkykaGqyvyini.pslsklfwqsHPFtiasapeddklslvikvksgltkklakkllssskkelenkkak 96 
                    +++ ak +l+++dli+++++k  k+ ++  +Gqy ++++ ++l+  fwqsHPFt+++   dd+l +v ++k g+t+ + k+l+++       + ++
     CCD24813.1 425 GAPLAKFQLYGKDLIRITIPKTPKMnWNGRPGQYGFLYVlHPLI--FWQSHPFTFID--ADDHLIIVARAKTGATHTIFKQLVKQ------GGSTQ 510
                    5678999**************7776699****************..9**********..8************************8......899** PP

  FAD_binding_8  97 lkvlidGPYGap 108
                     +v i+GPYG+p
     CCD24813.1 511 FHVSIEGPYGTP 522
                    **********98 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   4.9e-23   2.2e-19       1     155 [.     528     677 ..     528     678 .. 0.82

  Alignments for each domain:
  == domain 1  score: 70.1 bits;  conditional E-value: 4.9e-23
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx RF
  NAD_binding_6   1 yenvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyea....edasdqlissie 92 
                    ++nvll+agG+G+++++ ++  l +    ++ k+ +i+li vvr ++ l++fk   +e+  +k+  +i++ iY T  + a     +  + +++s +
     CCD24813.1 528 FTNVLLLAGGSGLPGLLDHASILAQDAL-KSNKIVYITLILVVRGHDILKAFK---KEILALKPL-KINLIIYDTALQLAgfgeATPNSDSTNSFH 618
                    79******************99988886.899*********************...*********.*************97765333333334434 PP

                    xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  93 genseslkqgvdavsgtr.nvkihfgRPnlkevlkdiaskhknssvgvfvCGppklvkevkklv 155
                    ++ ++s++   +++  ++ ++ i ++RPnl++vl+d+    +n+ +++++CGpp++v+ v++ +
     CCD24813.1 619 EPLLQSTS---NILKDLQgSAIIYYKRPNLEKVLSDA--CDENKGLAIVCCGPPSFVDIVRNNT 677
                    44444333...345555544566777***********..99999****************9976 PP

>> MLANA  Protein melan-A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.017        75      21      59 ..     154     192 ..     134     203 .. 0.76
   2 ?    2.0   0.1     0.053   2.4e+02      11      41 ..     337     368 ..     330     374 .. 0.72
   3 !    8.9   0.0    0.0004       1.8      33     100 ..     380     447 ..     376     450 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.017
       MLANA  21 taeeaaGigllvvvLaillllgCwyykrrsGYkslrsks 59 
                  + +  G+ l    L +ll+ +C+ y  r G+ ++  k+
  CCD24813.1 154 DISNYYGLLLCSYFLFVLLVASCFQYWDRTGFNAVLFKH 192
                 5556667777888999****************9876664 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.053
       MLANA  11 yfrgkgrsyitae.eaaGigllvvvLaillll 41 
                   ++ ++sy++    a  i++l+++L+i l+ 
  CCD24813.1 337 LSHSSKQSYFQFGiVACFIAILMIILSIGLIR 368
                 4456677888765257789*******998875 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0004
       MLANA  33 vvLaillllgCwyykrrsGYkslrskslkvstlktlvgegeleelakadsklalqefknfesvvpdap 100
                 ++Lail+  +Cw    + G+k+   +sl + +++++++  +l ++ +  +k++l  +  ++ ++p+ p
  CCD24813.1 380 IILAILFFYSCWKHVEKLGWKEWIFSSLAIWAMERIFRLIQLLNFGAPLAKFQLYGKDLIRITIPKTP 447
                 8********************99999999999999888888888877777777777766666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4726.95
//
Query:       CCD24814.1  [L=574]
Description: hypothetical protein NDAI_0D05010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.4e-162  539.7  34.3   6.2e-162  539.6  34.3    1.0  1  Sugar_tr  Sugar (and other) transporter
      2e-28   99.4  38.5    4.6e-26   91.6  25.8    2.1  2  MFS_1     Major Facilitator Superfamily
    0.00063   18.3   1.1    0.00063   18.3   1.1    2.1  2  MFS_3     Transmembrane secretion effector
  ------ inclusion threshold ------
        7.2    6.9   7.4       0.51   10.6   0.7    2.7  2  DUF2530   Protein of unknown function (DUF2530)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  539.6  34.3  1.4e-165  6.2e-162       1     452 []      73     533 ..      73     533 .. 0.99

  Alignments for each domain:
  == domain 1  score: 539.6 bits;  conditional E-value: 1.4e-165
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++l++a+gg ++g+dtg+i++f+++++ +++fg+++++++++ s+v++gl+++if++G++iG+l ++ lgd++GR+k+l+++++++++g v+++a+   
  CCD24814.1  73 LCLMIAFGGYVYGWDTGTISGFVSQTDWIRRFGQQRADGTYYLSKVRTGLLLAIFNIGCAIGGLAFSRLGDIYGRRKALVFVTIVYMVGLVISIASI-- 169
                 69***********************************************************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  +++++++gR+++G+gvG++ v +P++isE++pk++Rg+lvs+yql+it+Gi++++++++g+ ++sn+++wr++lgl +++al++++++lf+PESPr+l
  CCD24814.1 170 DKWYQYFIGRIISGMGVGGIAVYSPLLISEVSPKHVRGTLVSCYQLMITLGIFLGYCTNYGTRNYSNSVQWRVPLGLGFAWALFMIAAMLFVPESPRFL 268
                 56************************************************************************************************* PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksllv 292
                 +e+ + +ea++++a++++++ +d+++ +e++ l a++e e    +asw+el+++k+ v+ r+++g+++q +qqltG n++++y++ if ++gl++ +++
  CCD24814.1 269 IEVSQFDEARRSVARSNKVSVDDPSVIAEVEFLTAGVELEkaagSASWGELFQTKGkVLHRVIMGIMIQTLQQLTGANYFFFYGTLIFASVGLNDGFQT 367
                 ************************************999999********************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS........CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvR 384
                 ++i+gvvnfv+tf ai++vdrfGRRt+ll+Gaagm++c+v+++  +v+ l+++++     k+a++++i f+++fi++fa++w+p+ +v+vsE fp++++
  CCD24814.1 368 SVIIGVVNFVSTFPAIYIVDRFGRRTCLLWGAAGMICCMVVFAsvGVTRLWPNGKdqpssKGAGNCMICFTMFFIFCFATTWAPCAYVIVSESFPLRIK 466
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 385 skalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +k++++a a+nw++nfl ++++p+it+ai  +y+++vf+g+++++ ++vf+fvpetkg+tlee+++++
  CCD24814.1 467 AKGMSLAIAANWFWNFLLGFFTPFITGAID-FYYGYVFMGCLCFAWVYVFLFVPETKGLTLEEVNTMW 533
                 ******************************.***********************************99 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6  25.8     1e-29   4.6e-26       2     323 ..      78     454 ..      74     456 .. 0.80
   2 !   12.9  10.6   8.7e-06     0.039      89     185 ..     436     529 ..     430     553 .. 0.79

  Alignments for each domain:
  == domain 1  score: 91.6 bits;  conditional E-value: 1e-29
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg.........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.ll 88 
                 ++++ +++++ ++++ ++++    + +g         +s+   glll+++ +g+a++ l ++rl+d +Grr+ l++  +++ +g l++++a +  w   
  CCD24814.1  78 AFGGYVYGWDTGTISGFVSQtDWIRRFGqqradgtyyLSKVRTGLLLAIFNIGCAIGGLAFSRLGDIYGRRKALVFVTIVYMVG-LVISIAsIDKWyQY 175
                 677778888888888888888887888877777777799999******************************************.666645544555** PP

       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrks 183
                 +++r+++G+g g+++  +  li++++pk  rg  ++++++++ lG+ lg+      + +++    Wr++  +  + +l+++  ++l++pe+p+    +s
  CCD24814.1 176 FIGRIISGMGVGGIAVYSPLLISEVSPKHVRGTLVSCYQLMITLGIFLGYCTNY-GTRNYSnsvqWRVPLGLGFAWALFMIA-AMLFVPESPRFLIEVS 272
                 *************************************************65555.4445556788****9999999988866.6799999999999999 PP

       MFS_1 184 pkeee...............................kgtgpaplvpawkallkdp......vlwillialllfffgfsglltllplylqevlgls.gll 244
                 + +e                                k  g a+    w++l+  +      v++ ++i  l   +g ++++++ +l+     gl+ g +
  CCD24814.1 273 QFDEArrsvarsnkvsvddpsviaevefltagveleKAAGSAS----WGELFQTKgkvlhrVIMGIMIQTLQQLTGANYFFFYGTLI-FASVGLNdG-F 365
                 9999899999999998888888888888888775543333333....4444444433222233358888888888888899999996.899999988.9 PP

       MFS_1 245 laglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..........ssavllllvlvl...iGfglgfvfpslla 323
                 +++++++++ +v+    + a +++dr+grr+ ll++ ++++++ + +a ++vt          ss+ ++ +++ +   + f++++++++ ++
  CCD24814.1 366 QTSVIIGVVNFVS---TFPAIYIVDRFGRRTCLLWGAAGMICCMVVFASVGVTrlwpngkdqpSSKGAGNCMICFtmfFIFCFATTWAPCAY 454
                 9997777777777...999**********************************999999998855555555333323244466666666655 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 8.7e-06
       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspk 185
                 ++  ++   +a + +p +++++++ fp + ++++++l+ a++ +   l   + ++++ ++ + + +++++ +++ ++    ++l++++++  + +++
  CCD24814.1 436 CFTMFFIFCFATTWAPCAYVIVSESFPLRIKAKGMSLAIAANWFWNFLLGFFTPFITGAIDFYYGYVFMGCLCFAWVY---VFLFVPETKGLTLEEV 529
                 555555556667788999**********************************************************44...6666666655555444 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.1   1.4e-07   0.00063     256     379 ..     120     245 ..     113     300 .. 0.77
   2 ?   -0.7   0.1     0.079   3.6e+02      64      95 ..     381     412 ..     368     419 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.4e-07
       MFS_3 256 yGillgalGvGAilgalllsrLRerlss.erlvllaavalAlvllslalasslwvavlvlllgGaa..WitalstlnvavqlavPrWvvgRalavYltv 351
                  G+ll+ + +G  +g+l  srL ++ +  ++lv ++ v +   ++s+a  ++ ++ ++  +++G +   i+++s l   +  ++P+ v+g  ++ Y+ +
  CCD24814.1 120 TGLLLAIFNIGCAIGGLAFSRLGDIYGRrKALVFVTIVYMVGLVISIASIDKWYQYFIGRIISGMGvgGIAVYSPLL--ISEVSPKHVRGTLVSCYQLM 216
                 59***********************9862568888888888899999***********9999976511677777765..5579**************** PP

       MFS_3 352 laGglaaG.sllWGavaealsvtlaLlaa 379
                 ++ g+ +G    +G+   + sv++ + ++
  CCD24814.1 217 ITLGIFLGyCTNYGTRNYSNSVQWRVPLG 245
                 ****9999345689888877777654332 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.079
       MFS_3  64 laGalaDnfdrRkvllavqlllalvsvlltvl 95 
                 +a  + D f rR  ll++ + ++   v+ +++
  CCD24814.1 381 PAIYIVDRFGRRTCLLWGAAGMICCMVVFASV 412
                 566799***********999888765554443 PP

>> DUF2530  Protein of unknown function (DUF2530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.7   0.00011      0.51      14      55 ..     148     190 ..     143     193 .. 0.83
   2 ?   -3.4   1.1       2.7   1.2e+04      43      56 ..     392     405 ..     365     415 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
     DUF2530  14 rpvivvgtllWlvalvvllvvgdaleswl.pvclaGlvvGllG 55 
                 r ++v +t++++v+lv+ ++++d++ +++    + G++vG ++
  CCD24814.1 148 RKALVFVTIVYMVGLVISIASIDKWYQYFiGRIISGMGVGGIA 190
                 5678999**************9999886515678999999876 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.7
     DUF2530  43 pvclaGlvvGllGl 56 
                  +cl   + G++  
  CCD24814.1 392 RTCLLWGAAGMICC 405
                 44444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.31s 00:00:00.85 Elapsed: 00:00:00.67
# Mc/sec: 2596.87
//
Query:       CCD24815.1  [L=573]
Description: hypothetical protein NDAI_0D05020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.5e-163  544.2  34.0   2.9e-163  543.9  34.0    1.1  1  Sugar_tr        Sugar (and other) transporter
    2.7e-29  102.2  37.7    1.7e-26   93.0  24.4    2.1  2  MFS_1           Major Facilitator Superfamily
     0.0022   16.5   1.2     0.0022   16.5   1.2    1.9  3  TRI12           Fungal trichothecene efflux pump (TRI12)
     0.0031   16.0   4.0     0.0031   16.0   4.0    2.0  2  MFS_3           Transmembrane secretion effector
  ------ inclusion threshold ------
       0.21   10.5   0.0       0.29   10.0   0.0    1.1  1  Glyco_hydro_92  Glycosyl hydrolase family 92


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  543.9  34.0  8.2e-167  2.9e-163       1     452 []      72     532 ..      72     532 .. 0.99

  Alignments for each domain:
  == domain 1  score: 543.9 bits;  conditional E-value: 8.2e-167
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++l++a+gg ++g+dtg+i++f+++++ +++fg+++++++++ s+v++gl+++if++G++iG+l+++ lgd++GR+k+l++++v++++g ++++a+   
  CCD24815.1  72 LCLMIAFGGYVYGWDTGTISGFVSQTDWIRRFGQKHHDGTHYLSKVRTGLLLAIFNIGCAIGGLLFSRLGDIYGRRKALVFVTVVYMVGLIISIASI-- 168
                 69***********************************************************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  +++++++gR+++G+gvG++ v +P++isE++pk++Rg+lvs+yql+it+Gi++++++++g+ ++sn+++wr++lgl +++al+++++++f+PESPryl
  CCD24815.1 169 DKWYQYFIGRIISGMGVGGIAVYSPLLISEVSPKHVRGTLVSCYQLMITLGIFLGYCTNYGTRNYSNSVQWRVPLGLGFAWALFMIAAMFFVPESPRYL 267
                 56************************************************************************************************* PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksllv 292
                 +e+g+ eeak ++a++++ + +d+++ +e++ l a++e+e    +asw+el+++k+ ++ r+++g+++q +qqltG n++++y++ if + gl++ +++
  CCD24815.1 268 IEVGQFEEAKLSVARSNKLTVDDPSVIAEVEFLTAGVEAEkaagSASWGELFQTKGkILHRVIMGIMVQTLQQLTGANYFFFYGTLIFASSGLEDGFET 366
                 **************************************999********************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS........CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvR 384
                 ++i+gvvnfv+tf ai++vdrfGRRt+ll+Gaagm++c+v+++  +v+ l+++++     k+a++++i f+++fi++fa++w+p+ +v+vsE fp++++
  CCD24815.1 367 SVIIGVVNFVSTFPAIYIVDRFGRRTCLLWGAAGMICCMVVFAsvGVTRLWPNGQdqpssKGAGNCMICFTMFFIFCFATTWAPCAYVIVSESFPLRIK 465
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 385 skalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +k++++a a+nw++nfl ++++p+it+ai+ +y+++vf+g+++++ ++vfff+petkg+tlee+++++
  CCD24815.1 466 AKGMSLAIAANWMWNFLLGFFTPFITGAIN-FYYGYVFMGCLCFSWVYVFFFIPETKGLTLEEVNTMW 532
                 ******************************.***********************************99 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0  24.4   4.8e-30   1.7e-26       2     321 ..      77     448 ..      76     452 .. 0.79
   2 !   14.1   9.8   4.7e-06     0.017      89     185 ..     435     528 ..     431     553 .. 0.78

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 4.8e-30
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg.........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw.ll 88 
                 ++++ +++++ ++++ ++++    + +g         +s+   glll+++ +g+a++ l+++rl+d +Grr+ l++  +++ +g l++++a +  w   
  CCD24815.1  77 AFGGYVYGWDTGTISGFVSQtDWIRRFGqkhhdgthyLSKVRTGLLLAIFNIGCAIGGLLFSRLGDIYGRRKALVFVTVVYMVG-LIISIAsIDKWyQY 174
                 677778888899999999888887888888888888899999******************************************.888865545555** PP

       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrks 183
                 +++r+++G+g g+++  +  li++++pk  rg  ++++++++ lG+ lg+      + +++    Wr++  +  + +l+++  +++++pe+p+    + 
  CCD24815.1 175 FIGRIISGMGVGGIAVYSPLLISEVSPKHVRGTLVSCYQLMITLGIFLGYCTNY-GTRNYSnsvqWRVPLGLGFAWALFMIA-AMFFVPESPRYLIEVG 271
                 *************************************************65555.4445556788****9999999999866.6699999999999999 PP

       MFS_1 184 pkeee...............................kgtgpaplvp...awkallkdpvlwillialllfffgfsglltllplylqevlgls.glllag 247
                 + ee                                k  g a++ +     +++l++  +  +++  l   +g ++++++ +l+     gl  g ++++
  CCD24815.1 272 QFEEAklsvarsnkltvddpsviaevefltagveaeKAAGSASWGElfqTKGKILHRVIM-GIMVQTLQQLTGANYFFFYGTLI-FASSGLEdG-FETS 367
                 999989999999999999999999999888877555333333333344334444444433.46666666667777788888885.777777777.7777 PP

       MFS_1 248 lllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..........ssavllllvlvliGf.glgfvfpsl 321
                 ++++++ +v+    + a +++dr+grr+ ll++ ++++++ + +a ++vt          ss+ ++ + ++++++ + +++ +++
  CCD24815.1 368 VIIGVVNFVS---TFPAIYIVDRFGRRTCLLWGAAGMICCMVVFASVGVTrlwpngqdqpSSKGAGNC-MICFTMfFIFCFATTW 448
                 6666666666...999**********************************999999887755555555.4444441333333333 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 4.7e-06
       MFS_1  89 lvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspk 185
                 ++  ++   +a + +p +++++++ fp + ++++++l+ a++ +   l   + ++++ ++++ + +++++ +++ ++    ++++ ++++  + +++
  CCD24815.1 435 CFTMFFIFCFATTWAPCAYVIVSESFPLRIKAKGMSLAIAANWMWNFLLGFFTPFITGAINFYYGYVFMGCLCFSWVY---VFFFIPETKGLTLEEV 528
                 555555555666778999**********************************************************44...6666666655554444 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.2     6e-07    0.0022      80     162 ..     119     203 ..     115     248 .. 0.79
   2 ?   -4.3   0.2       1.2   4.3e+03     100     113 ..     383     396 ..     369     415 .. 0.65
   3 ?   -2.7   0.3       0.4   1.4e+03     186     208 ..     468     490 ..     444     503 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6e-07
       TRI12  80 sslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgct.atkfntllaamtllgvaa.gpagasplfvgelmsnk 162
                 ++l+ +++ +g a+  l++ rl d +grr  ++   ++ +vg i+  +  +k+   +    + g+   g a  spl++ e+  ++
  CCD24815.1 119 TGLLLAIFNIGCAIGGLLFSRLGDIYGRRKALVFVTVVYMVGLIISIAsIDKWYQYFIGRIISGMGVgGIAVYSPLLISEVSPKH 203
                 57888999*********************99999999999999998751589999999988988876156889******986543 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 1.2
       TRI12 100 rltdrfgrrpfvil 113
                  + drfgrr  ++ 
  CCD24815.1 383 YIVDRFGRRTCLLW 396
                 57899999986653 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.4
       TRI12 186 gqrlaiqgswrwifyiyiitsai 208
                 g  lai  +w w f +   t  i
  CCD24815.1 468 GMSLAIAANWMWNFLLGFFTPFI 490
                 77899*******99876655544 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   4.0   8.7e-07    0.0031     256     392 ..     119     257 ..     115     300 .. 0.77
   2 ?   -0.8   0.0      0.11   3.9e+02      64      95 ..     380     411 ..     373     418 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.7e-07
       MFS_3 256 yGillgalGvGAilgalllsrLRerlss.erlvllaavalAlvllslalasslwvavlvlllgGaa..WitalstlnvavqlavPrWvvgRalavYltv 351
                  G+ll+ + +G  +g+ll srL ++ +  ++lv +++v +   ++s+a  ++ ++ ++  +++G +   i+++s l   +  ++P+ v+g  ++ Y+ +
  CCD24815.1 119 TGLLLAIFNIGCAIGGLLFSRLGDIYGRrKALVFVTVVYMVGLIISIASIDKWYQYFIGRIISGMGvgGIAVYSPLL--ISEVSPKHVRGTLVSCYQLM 215
                 59***********************986256888888888889999************9999976511677777765..5579**************** PP

       MFS_3 352 laGglaaG.sllWGavaealsvtlaLlaaaaalllaaailll 392
                 ++ g+ +G    +G+   + sv++ + ++     +  +i  +
  CCD24815.1 216 ITLGIFLGyCTNYGTRNYSNSVQWRVPLGLGFAWALFMIAAM 257
                 *****9993456899888888887665443333333333333 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.11
       MFS_3  64 laGalaDnfdrRkvllavqlllalvsvlltvl 95 
                 +a  + D f rR  ll++ + ++   v+ +++
  CCD24815.1 380 PAIYIVDRFGRRTCLLWGAAGMICCMVVFASV 411
                 566789***********999888765554443 PP

>> Glyco_hydro_92  Glycosyl hydrolase family 92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   8.2e-05      0.29     378     422 ..     248     291 ..     243     315 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 8.2e-05
                     HHHHHHHHTEE-SSTTS-EEEE---SSSEEEEE-GGG-EEEEE-T CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_92 378 awyvfsalGlYpvapgspeyllgsPlfekvtirlengktltieak 422
                     aw++f    ++ v p sp+yl+    fe+++++++  ++lt+  +
      CCD24815.1 248 AWALFMIAAMFFV-PESPRYLIEVGQFEEAKLSVARSNKLTVDDP 291
                     9************.***************************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       645  (0.0359752); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 4375.99
//
Query:       CCD24816.1  [L=156]
Description: hypothetical protein NDAI_0D05030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.15   11.9   0.1        1.9    8.3   0.0    2.2  2  SCP_3     Bacterial SCP ortholog


Domain annotation for each model (and alignments):
>> SCP_3  Bacterial SCP ortholog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.018   3.2e+02      12      38 ..      76     102 ..      68     108 .. 0.78
   2 ?    8.3   0.0    0.0001       1.9      26      64 ..     114     152 ..     105     155 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.018
       SCP_3  12 tleelaekapGksvEvRvpPfaavqcv 38 
                 t+ ++ ++a G ++   +pPf  v+ +
  CCD24816.1  76 TTCAIIQEAGGGGIAAYLPPFLYVKSL 102
                 444567889999*********999866 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0001
       SCP_3  26 EvRvpPfaavqcveGprhtrgtPpnvvetdpetwlalat 64 
                  + vpPf +     G r t   P +v+e  +  ++ala 
  CCD24816.1 114 PIWVPPFEVDSSNRGVRPTISIPNSVIEQGSVFFIALAS 152
                 578********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1125.26
//
Query:       CCD24817.1  [L=313]
Description: hypothetical protein NDAI_0D05040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-35  123.6   7.8    1.5e-33  116.5   7.8    2.2  1  PRP21_like_P  Pre-mRNA splicing factor PRP21 like protein
  ------ inclusion threshold ------
      0.021   14.8   1.1      0.033   14.2   0.1    1.9  2  Surp          Surp module
       0.06   13.7   0.2        1.4    9.3   0.0    2.6  3  DUF5045       Domain of unknown function (DUF5045)


Domain annotation for each model (and alignments):
>> PRP21_like_P  Pre-mRNA splicing factor PRP21 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.5   7.8   2.5e-37   1.5e-33       4     217 .]     123     311 ..     120     311 .. 0.89

  Alignments for each domain:
  == domain 1  score: 116.5 bits;  conditional E-value: 2.5e-37
  PRP21_like_P   4 dkqkileralkraewekqkekeeqkkeeeeeeeklafasiDWqdFvvvetieFdddeleelpkPltleelkarsleqkskaleeaeaetdvemevde 100
                   ++++ l+r++kr  ++++ ++ + +kee ++ +k++f s++W+ F+vv++i  d ++  + p+Pl++++l+ + +++  + l    +++++  +v+e
    CCD24817.1 123 SQNEFLQRCFKRSIFNEYAKEYHTEKEEANKLQKIQFYSFNWTKFKVVGKIIVDGIDETTVPEPLDFKMLSLKNINNTISTL----FNEPTAFKVAE 215
                   567889*********************************************999988999*************999999999....88888887776 PP

  PRP21_like_P 101 eeeeeseekiekkskesavseepalakaekkmkikadyesrlkkrknskatkekkka..kcpitgeliPedeleeHmrieLlDPrykeqkdklvekk 195
                    e  ++       sk              +k+ ++ ++e+r kk+kns + + ++    +cpit +++++d++++H+ri+L DP+yk++++k+  ++
    CCD24817.1 216 SEPGKK-------SK--------------RKLNVRGAGETRRKKNKNSPNLSTENGRmiECPITHKMVEADNFDKHLRILLSDPNYKQEREKY--EA 289
                   554322.......22..............6899*********99999877553332247*********************************9..99 PP

  PRP21_like_P 196 skesslltddevaenlkrlakk 217
                   ++  ++lt+de+ en++r+++k
    CCD24817.1 290 KHRLTNLTTDEIFENIQRIVQK 311
                   999****************986 PP

>> Surp  Surp module
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.4   8.7e+03      31      38 ..      27      34 ..      15      37 .. 0.73
   2 ?   14.2   0.1   5.5e-06     0.033       1      53 []      44      99 ..      44      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                TSGGGSTT CS
        Surp 31 qFaFLkdp 38
                 F+F +++
  CCD24817.1 27 PFSFIFSN 34
                49999877 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 5.5e-06
                HHHHHHHHHHHTT-S.....SHHHHHHHH.T--TTSGGGSTT.STTHHHHHHHHHHH CS
        Surp  1 leiIkktAqfVarnGk....eFeqklrerernnpqFaFLkdpdhpyhayYrwrvdey 53
                l+iI  tA++ + n        + +l+e  ++  qF+F k + hp++ ++ +++++y
  CCD24817.1 44 LQIIRITAEYFVANEItdlnSLLVQLKESFEDISQFNFCKAD-HPLNDLFLAFINQY 99
                579************5555599999999999999*****666.**********9998 PP

>> DUF5045  Domain of unknown function (DUF5045)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00023       1.4      32      73 ..      28      69 ..       7      79 .. 0.81
   2 ?   -3.7   0.0       2.5   1.5e+04      55      64 ..      94     103 ..      92     107 .. 0.75
   3 ?    1.2   0.0     0.079   4.7e+02      44      67 ..     221     243 ..     203     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00023
     DUF5045 32 YyllHkkYeksaavKrklpfRvtAgitqrqkvdkaeaidsal 73
                + ++  +Y+k+  +K  + +R+tA+    +++ + +++   l
  CCD24817.1 28 FSFIFSNYHKDVTNKDLQIIRITAEYFVANEITDLNSLLVQL 69
                778999*******************99999998888665555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.5
     DUF5045  55 Agitqrqkvd 64 
                 A i+q+++++
  CCD24817.1  94 AFINQYKQIK 103
                 6788898887 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.079
     DUF5045  44 avKrklpfRvtAgitqrqkvdkae 67 
                 ++Krkl +R  Ag+t r+k ++  
  CCD24817.1 221 KSKRKLNVR-GAGETRRKKNKNSP 243
                 579999999.58999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2299.89
//
Query:       CCD24818.1  [L=213]
Description: hypothetical protein NDAI_0D05050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-64  218.7  26.6    1.5e-64  218.5  26.6    1.0  1  Sugar_tr  Sugar (and other) transporter
     0.0018   17.3  21.0      0.004   16.1  21.0    1.5  1  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.5  26.6   1.7e-68   1.5e-64     257     452 .]       1     202 [.       1     202 [. 0.99

  Alignments for each domain:
  == domain 1  score: 218.5 bits;  conditional E-value: 1.7e-68
                 HHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS........ CS
    Sugar_tr 257 igvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.....kaa 348
                 +g+v+q++qqltG+n+++yy++tif+ +g+++s+l++i++gvvnf++tf+a+++v+rf  R++ll+G+a ma+cfv+++  +v+ l+++++     k+a
  CCD24818.1   1 MGAVVQSLQQLTGCNYFFYYGTTIFQAVGMEDSYLTSIVLGVVNFASTFAALWTVERFEHRRCLLFGSAAMAVCFVVFAstGVTELYPNGHdqatsKVA 99 
                 799************************************************************************************************ PP

                 CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCC CS
    Sugar_tr 349 sivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtlee 447
                  +++ivf++lfi++fa++w+p+p+v+v+E +p+ +++ a+aiav +nw++ f+i++++p++t++i+ +y++++f g ++++i++vfffv+etkg+ le+
  CCD24818.1 100 DNIMIVFTYLFIFFFATTWAPIPFVVVAESYPLLIKNRAMAIAVGANWMWGFAIGFCTPFVTSTIN-FYYGFIFFGYLIFSILYVFFFVCETKGLLLEK 197
                 ******************************************************************.******************************** PP

                 CGGGT CS
    Sugar_tr 448 ieelf 452
                 ++e++
  CCD24818.1 198 VTEMY 202
                 *9996 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1  21.0   4.5e-07     0.004      35     187 ..      33     201 ..       9     212 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.5e-07
       MFS_1  35 gllltlyalgaavaslplGrl.sdrfGrrrvlllglllfalglllllfass..................lw.lllvlrvlqGlgagalfpagaaliadw 113
                 + l++++  +  +as +++ + ++rf +rr+ll+g +++a+++++++  s+                     ++++  ++  ++a + +p+  +++a+ 
  CCD24818.1  33 SYLTSIVLGVVNFASTFAALWtVERFEHRRCLLFGSAAMAVCFVVFA--STgvtelypnghdqatskvaDNiMIVFTYLFIFFFATTWAPIPFVVVAES 129
                 446666555555555555555499******************55555..2223344444566677777766577778888888888888999******* PP

       MFS_1 114 fpkeergraigllsa.gfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkee 187
                 +p   ++ra++++ +  +  G+++g    ++++s +++ + f++++ + +    l ++++++e +    ++ +e 
  CCD24818.1 130 YPLLIKNRAMAIAVGaNWMWGFAIG-FCTPFVTSTINFYYGFIFFGYLIFSI--LYVFFFVCETKGLLLEKVTEM 201
                 ***6666666665441577788888.88899999999*********999999..666888887776666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1517.01
//
Query:       CCD24819.1  [L=161]
Description: hypothetical protein NDAI_0D05060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-45  152.3   0.3    3.7e-45  151.9   0.3    1.1  1  GSHPx     Glutathione peroxidase
      3e-05   23.9   0.1    6.6e-05   22.8   0.1    1.6  1  AhpC-TSA  AhpC/TSA family
    0.00049   19.8   0.1    0.00081   19.1   0.1    1.5  1  Redoxin   Redoxin


Domain annotation for each model (and alignments):
>> GSHPx  Glutathione peroxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.9   0.3   6.2e-49   3.7e-45       1     108 []       4     111 ..       4     111 .. 0.99

  Alignments for each domain:
  == domain 1  score: 151.9 bits;  conditional E-value: 6.2e-49
                 GGGBEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEE-TTTT---S-GGGHHHTSSHTTT-SSEEB--BBSSSTT CS
       GSHPx   1 iyelsakdidgekvkleklrgkvvlivnvaskCglteqykeleelqkrykdkglvilgfPCnqfgkqepgsdeeikkfrqgkyevtfellekievnGek 99 
                 +y+l+a   + e+++++ l+gkvvlivnvaskC++t+qyk le+l+++ykdkg++ilgfPCnqf  qepgsd++ikkf+q++++vtf+l++ki+vnG++
  CCD24819.1   4 FYDLTANLPNDETFHFSDLKGKVVLIVNVASKCSFTPQYKPLEHLYRKYKDKGFTILGFPCNQFAGQEPGSDADIKKFCQETFGVTFPLMKKINVNGSQ 102
                 799999999****************************************************************************************** PP

                 B-HHHHHHH CS
       GSHPx 100 edplykflk 108
                  dp+y++lk
  CCD24819.1 103 TDPVYQYLK 111
                 *******98 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   1.1e-08   6.6e-05       7      89 ..       6      95 ..       2     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.1e-08
                --EEESTTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCH........HHHHHHHH-H..SSEEEE- CS
    AhpC-TSA  7 dfelknadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspe........shkkfiekes.lnfpllsD 89
                d +++  + et+++sd+kgk+v+++ +++  c ++  + + l+ ly ++k++g++++g  +++ +        ++kkf+++   ++fpl+  
  CCD24819.1  6 DLTANLPNDETFHFSDLKGKVVLIVNVAS-KCSFT-PQYKPLEHLYRKYKDKGFTILGFPCNQFAgqepgsdaDIKKFCQETFgVTFPLMKK 95
                5666666779*********9999999999.99987.67899******************999988888999999999999887788888765 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   1.4e-07   0.00081      17      89 ..      13      92 ..       3     143 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.4e-07
                CEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEE........EESSSHHHHHHHHH.TT-TSEE CS
     Redoxin 17 dgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvav........vadndafvkefwgk.eglkfpv 89
                + ++++ s++kgk+v+++ v++  c   +++   le+l++++k+kg+++++            +da  k+f+ +  g++fp+
  CCD24819.1 13 NDETFHFSDLKGKVVLIVNVAS-KCSF-TPQYKPLEHLYRKYKDKGFTILGFpcnqfagqEPGSDADIKKFCQEtFGVTFPL 92
                568999****************.7876.566669***************998666554444444444777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1313.33
//
Query:       CCD24820.1  [L=617]
Description: hypothetical protein NDAI_0D05070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.2e-60  201.0  10.8      7e-31  107.2   1.9    3.7  3  Sir1      Regulatory protein Sir1


Domain annotation for each model (and alignments):
>> Sir1  Regulatory protein Sir1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   1.9   3.9e-35     7e-31       1     120 []       3     126 ..       3     126 .. 0.98
   2 !    8.6   0.7   0.00014       2.5       4      88 ..     158     243 ..     156     272 .. 0.66
   3 !   88.9   0.0   1.9e-29   3.3e-25       2     120 .]     437     553 ..     436     553 .. 0.98

  Alignments for each domain:
  == domain 1  score: 107.2 bits;  conditional E-value: 3.9e-35
        Sir1   1 kisdryavidgFlVdtekkkkiinpktkklkkltkeerekleklklvdldelkk.ysksdlipvdskeLFelveteerefyetedgliivnkrtk.... 94 
                 ++++ry++i+g++Vd+e++ kiinp+ k++k+l    +++l +l+++++de++k +++++l++ ds++LF l+e+e+++f++++d++i+ +k+++    
  CCD24820.1   3 MLNTRYTFINGWIVDLENG-KIINPDLKTYKPL----KKLLGDLQYWNWDEYFKqSDHCQLYCDDSSVLFGLIEMEDYNFLRMKDHTITREKESIwnrn 96 
                 5799***************.************9....*********************************************************99999 PP

        Sir1  95 ....kkkrkesievrvipirlkkkkvkYLy 120
                     +++++++iev++++i+++++kv+YL+
  CCD24820.1  97 rnrnRNRIVDIIEVQAHKISISNHKVVYLH 126
                 99999999*********************7 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00014
        Sir1   4 dryavidgFlVdtekkkkiinpktkklkkltkeerekleklklvdldelkk..ysksdlipvdskeLFelveteerefyete.dglii 88 
                 ++++ idgFlV++  + ++  +++k+l+ +  +  + l+ +   + ++l+k  +++s+ i ++ k +F  +e  ++  ++   d+++ 
  CCD24820.1 158 ESFLEIDGFLVNLISR-QLSSMHSKTLRAF-LSLENWLSLKSVANANSLEKlqNMTSNYIFTERKSIFHVLEGHVYVNFRLVnDHFVC 243
                 67888***********.8888888888876.555566666666676666666558999999999999999988777544444144444 PP

  == domain 3  score: 88.9 bits;  conditional E-value: 1.9e-29
        Sir1   2 isdryavidgFlVdtekkkkiinpktkklkkl.tkeerekleklklvdldelkkysksdlipvdskeLFelveteerefyetedgliivnkrtkkkkrk 99 
                  s+ry+++d+Fl+d+  k ++++p++++l k  t +ere    + l+d++ l +  ++d+ip+ s+ LF+lve+++ ++++++ g i++++++++++ +
  CCD24820.1 437 PSKRYIIVDRFLIDIVGK-RVVDPMDHELLKEmTYREREITFGKGLYDWNLLLF--NEDPIPTFSTILFNLVEYSSSQILWDRYGDIHLQPTMINANGS 532
                 59****************.********998777*********************..******************************************* PP

        Sir1 100 esievrvipirlkkkkvkYLy 120
                 +++ +r+++i+lk+++++Y+y
  CCD24820.1 533 NVQIRRTVAIDLKENGIRYIY 553
                 ********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 4817.35
//
Query:       CCD24821.1  [L=364]
Description: hypothetical protein NDAI_0D05080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-22   79.6   0.0    2.7e-22   78.7   0.0    1.4  1  ADH_N_2       N-terminal domain of oxidoreductase
    1.5e-16   60.5   0.1    2.8e-16   59.7   0.1    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
    0.00039   21.5   0.0    0.00094   20.2   0.0    1.7  2  ADH_zinc_N_2  Zinc-binding dehydrogenase
     0.0062   16.3   0.1     0.0085   15.9   0.1    1.2  1  DUF2855       Protein of unknown function (DUF2855)
  ------ inclusion threshold ------
       0.04   14.0   0.1      0.083   13.0   0.1    1.5  1  LAB_N         Lipid A Biosynthesis N-terminal domain


Domain annotation for each model (and alignments):
>> ADH_N_2  N-terminal domain of oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   7.4e-26   2.7e-22      13     108 .]      25     123 ..      17     123 .. 0.92

  Alignments for each domain:
  == domain 1  score: 78.7 bits;  conditional E-value: 7.4e-26
     ADH_N_2  13 ptesdfeleeeelp..elkdGevlvralylSvDPymRgrmnd.aksyvepvelgdvmrggavgeVveSknpdfkvGdlVvgllgwqdyavsdgkglekv 108
                  ++ +fel +++l   +l+ G++lv++ ylS DP++++++ + +k+y + v +g+ + + ++++V+eSkn+dfkvGd+V++++gw+++++ +++++ek+
  CCD24821.1  25 SKDATFELITKDLTsnDLQSGDILVETCYLSNDPAQKFWIATvDKNYSPGVSVGEIIPARGIAKVIESKNDDFKVGDYVSAYVGWTTHTIITKEQTEKI 123
                 67899*****9998779**********************99747888999*****************************************99998875 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.1   7.8e-20   2.8e-16       1     126 [.     177     312 ..     177     315 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 7.8e-20
                 HHHHHHHHHHH.HTT-.EEEEEESSHHHHHHHHHTTESEE.EETTTC.HHHHHHHHHTT.TSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC..TS CS
  ADH_zinc_N   1 gvGlaavqlAk.alGa.eviavdsseeklelakklGadev.inykea.dlverikeltg.gegvdvvfecvGsgatleaalkllkpgGrlvvvGg..gk 92 
                 +vG++ vqlA   ++a +via+++ +ekl++++++G  +v ++y ++ ++++ + ++ g ++ vd+ ++ vG g+ l+  ++llkp+ +l  +G   g+
  CCD24821.1 177 AVGSISVQLAVnVFKAsKVIAIAGGAEKLKYVESFGNQVVgVDY-KDpNFKDNLLKAAGgKNTVDYFIDNVG-GEILDLGVELLKPKTMLLACGSisGY 273
                 69********999***********************66653788.5559***9999998799**********.**********************7766 PP

                 SEEE...EEHHH.HHHTT-EEEEE-SSCHHHHHHH.HHH CS
  ADH_zinc_N  93 geee...fdlrn.lllkeksilGsllgslreefke.ald 126
                 ++++   f+ +  ++ k+++++G ll +  +ef++ +++
  CCD24821.1 274 NDSSklvFKNYVsVITKRLTLKGLLLTDNLDEFPQgLNK 312
                 666697655554689************999999995544 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.9   1.8e+04       2      28 ..      85     105 ..      85     116 .. 0.64
   2 !   20.2   0.0   2.6e-07   0.00094       6     105 ..     215     325 ..     212     357 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.9
                   T-SEEEETTSTTHHHHH-TT-EEEEEE CS
  ADH_zinc_N_2   2 GAdevidyrtedfeaatggegvDvvld 28 
                   G  +vi ++++df+  + g   D+v  
    CCD24821.1  85 GIAKVIESKNDDFK--V-G---DYVSA 105
                   56689999999994..4.2...44444 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2.6e-07
                   EE..ETTSTTHH.....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.........S-EEE-CHHHCTTT-EEEE--GGG...-... CS
  ADH_zinc_N_2   6 vi..dyrtedfe.....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpp........lsaallkpakkrkgrsvkyeflfsmkas... 84 
                   v+  dy++++f+     aa g++ vD+ +d+vgge l +  +++l++  +++  +g++        l         +++  sv ++ l+ +k     
    CCD24821.1 215 VVgvDYKDPNFKdnllkAAGGKNTVDYFIDNVGGEIL-DLGVELLKP-KTMLLACGSIsgyndsskL--------VFKNYVSVITKRLT-LKGLllt 300
                   5556***********976666699***********99.*******77.6775555555444443332........22333333333333.2222444 PP

                   .....-HHHHHHHHHHHHHHH---- CS
  ADH_zinc_N_2  85 ....aqadileelaalieeGklrpv 105
                       +  + l++l++li+eGkl + 
    CCD24821.1 301 dnldEFPQGLNKLTNLIKEGKLDVK 325
                   447766666************9875 PP

>> DUF2855  Protein of unknown function (DUF2855)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.4e-06    0.0085      38      83 ..      80     131 ..      62     193 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.4e-06
     DUF2855  38 ivPvWGfatVveStvpkiavGerlyGylPiashlvvspsdlkleg......f 83 
                 i+P+ G a+V+eS++++ +vG ++  y+  ++h++++ ++ ++        +
  CCD24821.1  80 IIPARGIAKVIESKNDDFKVGDYVSAYVGWTTHTIITKEQTEKITklstenV 131
                 79*********************************88877766554545550 PP

>> LAB_N  Lipid A Biosynthesis N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.3e-05     0.083      28      49 ..     131     152 ..     119     157 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.3e-05
       LAB_N  28 lpvlFWvlSllGslllliYail 49 
                 +  l+W+lS+lG++ l +Y+i+
  CCD24821.1 131 VDELWWYLSVLGGTALTAYFIF 152
                 56789***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2757.49
//
Query:       CCD24822.1  [L=343]
Description: hypothetical protein NDAI_0D05090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-16   59.2   0.0      6e-16   58.6   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
    3.6e-14   52.5   0.0    4.9e-14   52.0   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    1.3e-07   31.1   0.0     0.0017   17.6   0.0    2.4  2  NAD_binding_4    Male sterility protein
    7.5e-06   25.9   0.1      2e-05   24.6   0.0    1.9  2  NAD_binding_10   NAD(P)H-binding
    4.4e-05   23.0   0.0    0.00012   21.7   0.1    1.7  2  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
     0.0011   18.2   0.0     0.0021   17.3   0.0    1.5  1  OMS28_porin      OMS28 porin
     0.0026   17.9   0.0     0.0053   16.9   0.0    1.5  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
     0.0042   16.7   0.0      0.046   13.3   0.0    2.1  2  NmrA             NmrA-like family
     0.0053   16.2   0.1      0.013   15.0   0.0    1.7  2  adh_short        short chain dehydrogenase
  ------ inclusion threshold ------
      0.012   14.8   0.1      0.018   14.2   0.1    1.4  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.068   13.8   0.0       0.22   12.1   0.0    1.8  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
      0.077   12.1   0.0        0.1   11.7   0.0    1.2  1  RmlD_sub_bind    RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0     4e-19     6e-16       1     229 [.       3     257 ..       3     266 .. 0.79

  Alignments for each domain:
  == domain 1  score: 58.6 bits;  conditional E-value: 4e-19
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHH..T-SEEEE--S---HHHHHHSHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkee..qpdavihlAavggvaassedpadfie 89 
                 +++ GatGfi ++++ +lle++ +vig  r +s+  + + +          e +  d+ d +a++++f+++  ++ +v+h        +  ++ +d++ 
  CCD24822.1   3 VFISGATGFIAQHIISQLLEQNFKVIGSVRSQSKADKLLGQ-FngnknlsfE-IVEDISDLTAFNEVFAKHgkEIKYVLHT-SSPFFTDCDDYEKDLLV 98 
                 6899***********************99996555544333.2699999633.444**************98889999999.6889999999******* PP

                 HHTHHHHHHHHHHHHH...TCTEEEEEEE.GGGGTSCSS.SS....BSTCSTTS--.....--SSHHHHHHHHHHHHHHHHHHHHT....-EEEEEEES CS
   Epimerase  90 knlqgtlnlleaarka...gvkrllflsS.sevYGkdae.qp....keettltgpl.....kpnspYaaaKlageklveayaaqyg....lnaiilrlf 170
                   l+gt  +l+ + k+    v+r++  sS ++++   ++  p    +e t + +++         +Y  +K ++ek+++++ +++     ++ ++++++
  CCD24822.1  99 PALNGTKGILHSILKYaadTVERVVITSSvAAMFDFTKDlDPsysyNENTWNPDSYedaliDGGHAYNGSKKLAEKYAWDFVEEHRneikFKLTTVNPS 197
                 **************99555666*******667777333333555532222222222333368899***************999995588899******* PP

                 EEESTTS-TTSTTSHHHHHHHHHHTTSSSEEEET...TST-EEEEEEHHHHHHHHHHHHHHH CS
   Epimerase 171 nlyGprngegevsrvipalirkilegkqevtllg...dgtalRdflyveDvaeaillvlehv 229
                  ++Gp +++++vs+++    + i++    +   +   d + +  f++v+Dva+a+ll+ +++
  CCD24822.1 198 YVFGPQRFDENVSSKLNTSCELIHKLM--LSSADdkvDNSFVGSFIDVRDVAKAHLLAFQRP 257
                 ******999999999999988888744..222224447888899**************9986 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   3.3e-17   4.9e-14       2     230 ..       5     255 ..       4     261 .. 0.69

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 3.3e-17
   3Beta_HSD   2 vtGgaGFlGralvkeLvrleelkevrvlD.lrespelleelskvnvkk....viegDvtdkdkleeal....egvdvvihlaslvdvagkltedeimkv 91 
                 + G++GF+ ++++++L++ +  k + ++    + ++ll +++     k     i  D+ d    +e+     ++++ v+h+ s       ++e+ +   
  CCD24822.1   5 ISGATGFIAQHIISQLLEQNF-KVIGSVRsQSKADKLLGQFNGN---KnlsfEIVEDISDLTAFNEVFakhgKEIKYVLHTSSPFFTDCDDYEKDLLVP 99 
                 68***************9884.3333322122233333333333...233466777888887777765333368999****998777777777779999 PP

   3Beta_HSD  92 nvkGTrnvleacvka...gvrvlvYtSsaevvgpnslg.eeilngdEeleyesl.......hqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpa 179
                  ++GT+ +l + +k     v+++v tSs+ ++++ ++  ++    +E++  + +         +ay+ sK+laEk+     + + +n  ++    + p+
  CCD24822.1 100 ALNGTKGILHSILKYaadTVERVVITSSVAAMFDFTKDlDPSYSYNENTWNPDSyedalidGGHAYNGSKKLAEKYAWDFVE-EHRNEIKFKLTTVNPS 197
                 9*********9987522279**************4332267778899887776622223334579*************9999.56666666666779** PP

   3Beta_HSD 180 giyGeg..dkllvpllkqlaklgla.lfki....gdeevlsdrvYvgNvawahilAar 230
                 +++G++  d+ ++  l+++  l ++ ++++    +d++ + +++ v  va+ah+lA +
  CCD24822.1 198 YVFGPQrfDENVSSKLNTSCELIHKlMLSSaddkVDNSFVGSFIDVRDVAKAHLLAFQ 255
                 *****74456677777776665443144441111455556778899**********86 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.1e-06    0.0017       1      36 [.       5      38 ..       5      45 .. 0.90
   2 !   11.0   0.0   0.00012      0.18     121     226 ..      68     224 ..      65     250 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
                   EE-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHHH CS
  NAD_binding_4  1 lTGaTGFLGkvLlekLLrttpevkiyllvRaksges 36
                   + GaTGF++++++ +LL+++   k++  vR++s+++
     CCD24822.1  5 ISGATGFIAQHIISQLLEQNF--KVIGSVRSQSKAD 38
                   67****************987..9******999865 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00012
                    HHTSSS--.-EEEEEE.GGGTTS-TTT--SSS-H.................................................HHH--EEEETTTC CS
  NAD_binding_4 121 lakklkklkvllhvST.ayvngeregeveekvyeege...........................................keekldederaklkgl 172
                    +ak +k+ k +lh S+  + +++++++  + ++++ +                                           ++    +  ++ l + 
     CCD24822.1  68 FAKHGKEIKYVLHTSSpFFTDCDDYEK--DLLVPALNgtkgilhsilkyaadtvervvitssvaamfdftkdldpsysynENTWNPDSYEDALIDG 161
                    677777777788888865555555532..2333333355677888888888888888888888888888888887777765555555555666667 PP

                    CCHHHHHHHHHHHH....HHHHHHHH---EEEEEE-EEE-.....-SSST---TTSHHHHHHH CS
  NAD_binding_4 173 pntYeqsKalaEkl....vrearrrsglpvvivRpsiitg.....esktGwingsdlgirgll 226
                     ++Y+ sK laEk     v+e+r++ +++++ v ps++ g     e ++  +n+s  +i+ l+
     CCD24822.1 162 GHAYNGSKKLAEKYawdfVEEHRNEIKFKLTTVNPSYVFGpqrfdENVSSKLNTSCELIHKLM 224
                    789*********863333888998899999********9987777444444555544555444 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.3e-08     2e-05       1      59 [.       7      69 ..       7     197 .. 0.66
   2 ?   -2.6   0.0       2.9   4.3e+03     160     179 ..     233     252 ..     227     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.3e-08
                    TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCH....HHHCTTTCEE.EE--TT-CCHHHHHHT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRnpekla....eleaeeglev.vegdvtdvedlaealk 59
                    GAtG ++++++++ll++ +++v   vR+++k++    ++  +++l+  ++ d++d  +  e+++
      CCD24822.1  7 GATGFIAQHIISQLLEQ-NFKVIGSVRSQSKADkllgQFNGNKNLSFeIVEDISDLTAFNEVFA 69
                    9****************.6*************93333344555554323335555555555554 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.9
                     TSS----EEEHHHHHHHHHH CS
  NAD_binding_10 160 gepfkggsisradVAdvlva 179
                     +++f g+ i  +dVA++ + 
      CCD24822.1 233 DNSFVGSFIDVRDVAKAHLL 252
                     66788899999999988665 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   7.7e-08   0.00012       1      81 [.       4      80 ..       4     127 .. 0.81
   2 ?   -2.2   0.0       1.4     2e+03     163     206 ..     179     222 ..     155     269 .. 0.56

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 7.7e-08
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHH..T-SEEEE CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhkgDltDssslerllaev..qpdevyn 81
                   +i G +Gfi ++++ +Lle++++v+g vr +s+ +     +l  + + +++ +++++  D++D ++ ++++a++  +++ v++
     CCD24822.1  4 FISGATGFIAQHIISQLLEQNFKVIGSVRSQSKAD-----KLLGQFNGNKNLSFEIV-EDISDLTAFNEVFAKHgkEIKYVLH 80
                   599***********************999888744.....33333222223345555.5*************98555666655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.4
                    HHHHHHHHH---EEEEEE-EEESTTS-TTSCCCHHHHHHHHHHT CS
  GDP_Man_Dehyd 163 ivvnyreayglfavngilfnhesprrgetfvtrkitravarial 206
                    +v++ r++ ++  ++ + +   +p r  + v  k+ +    i++
     CCD24822.1 179 FVEEHRNEIKFKLTTVNPSYVFGPQRFDENVSSKLNTSCELIHK 222
                    45555555566666666666666666655555555444444333 PP

>> OMS28_porin  OMS28 porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.4e-06    0.0021      64     121 ..     205     263 ..     189     291 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.4e-06
  OMS28_porin  64 vtedvssklegvresslelv.esndagvvkkfvgsmslmsdvakgtvvasqeativakc 121
                    e+vsskl+   e   +l+  s d  v + fvgs+  + dvak  ++a q  t++ k 
   CCD24822.1 205 FDENVSSKLNTSCELIHKLMlSSADDKVDNSFVGSFIDVRDVAKAHLLAFQRPTLIGKR 263
                  6799*********9988875267899999*************************99885 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.5e-06    0.0053       1      70 [.       1      67 [.       1      70 [. 0.93

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.5e-06
                EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SE CS
      DapB_N  1 ikvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglgklgvavtddleevlekadv 70
                ++v + Ga+G + +++++ + e +++++ + v +++    +k +g++ g ++l++++ +d++++++ ++v
  CCD24822.1  1 MSVFISGATGFIAQHIISQLLE-QNFKVIGSVRSQS--KADKLLGQFNGNKNLSFEIVEDISDLTAFNEV 67
                789******************9.99*****999987..79999********************9998887 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.1e-05     0.046       2      35 ..       4      37 ..       3     123 .. 0.79
   2 ?    1.3   0.0      0.14     2e+02     141     212 ..     202     271 ..     168     284 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
                EESSTTSHHHHHHHHHHHHHT-EEEEEES-S-SH CS
        NmrA  2 lviGaTGrqGksvvrallkaghkvralvRdtkse 35
                 + GaTG +++++++ ll++++kv   vR +++ 
  CCD24822.1  4 FISGATGFIAQHIISQLLEQNFKVIGSVRSQSKA 37
                688**************************98543 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.14
                 E-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE...-HHHHHHHHHHHHHHHHHHHTTEEEEE-SEEE CS
        NmrA 141 agffmenflsllaqlkvgdtappedkvtllgpgnpkavll...daeeDiGafvikilkdprklkgkriklagntl 212
                 ++ f en++s+l +  ++  ++    +  +++ +++  ++   ++++D++++ + ++++p+   gkr+ l +   
  CCD24822.1 202 PQRFDENVSSKLNT-SCELIHK---LMLSSADDKVDNSFVgsfIDVRDVAKAHLLAFQRPTL-IGKRLLLISSRF 271
                 55677777776666.3333332...2455677777777777778************999864.455555555555 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.8e-06     0.013       3      77 ..       3      77 ..       1      80 [. 0.93
   2 ?   -2.8   0.0       2.5   3.7e+03     125     140 ..     116     131 ..      98     136 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.8e-06
                EEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHHHSS CS
   adh_short  3 vlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkklgk 77
                v++ Ga++ I + i  +l+++++kv+   rs++k+ +++ +++ +++  + i  D++d ++ +++++k  k+++ 
  CCD24822.1  3 VFISGATGFIAQHIISQLLEQNFKVIGSVRSQSKADKLLGQFNGNKNLSFEIVEDISDLTAFNEVFAKHGKEIKY 77
                8899*****************************************999999999***********9998888765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.5
                 HCTTEEEEEEEEGGGT CS
   adh_short 125 kqssGrIvnvsSvagk 140
                 +    r+v +sSva+ 
  CCD24822.1 116 ADTVERVVITSSVAAM 131
                 4455578888888875 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   1.2e-05     0.018       1      85 [.       3      82 ..       3     131 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.2e-05
                     EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT....T-SEEEE-- CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel..kvdvvfhaA 85
                     v+++Ga+G i +++++q+l+++ k i  + ++  k +++  ++     +k+l++e   ++ d+ d +  ++++ ++  ++++v+h+ 
       CCD24822.1  3 VFISGATGFIAQHIISQLLEQNFKVIGSVRSQS-KADKLLGQF---NGNKNLSFE---IVEDISDLTAFNEVFAKHgkEIKYVLHTS 82
                     78********************99887665544.444444444...356678788...88999999999999998733577899975 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00015      0.22       6      47 ..       8      45 ..       3      73 .. 0.84
   2 ?   -2.2   0.0       4.4   6.6e+03      57      81 ..     114     138 ..     101     144 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00015
                   TTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC CS
  F420_oxidored  6 GaGnmgealasgllaagaqpheivvansrnpekaeelaeelg 47
                   ++G +++ ++s+ll+++    +++ ++ r+++ka++l  +++
     CCD24822.1  8 ATGFIAQHIISQLLEQN---FKVI-GSVRSQSKADKLLGQFN 45
                   58***************...***9.99**********98887 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.4
                    HHHHH-SEEEE-S-HHHHHHHHHHC CS
  F420_oxidored  57 eaaeeadvvvlavkpedveevlsel 81 
                     aa+  + vv++   +++ ++ ++l
     CCD24822.1 114 YAADTVERVVITSSVAAMFDFTKDL 138
                    5677777888887777777777776 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.9e-05       0.1       1     109 [.       1     136 [.       1     185 [. 0.75

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.9e-05
                    EEEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT.....................T--TTSHHHHHHHHHHH--S..EEEE--..----HHHHHHSH CS
  RmlD_sub_bind   1 mkilvtGanGqlGseLakqlaeeglevlaltre.....................eldltdaeavaellkeakpd..vvvnaA..AytavDkaEsee 71 
                    m + + Ga+G ++++++ ql e++++v++  r+                       d++d +a +e+++++ ++   v ++   ++t+ D  E++ 
     CCD24822.1   1 MSVFISGATGFIAQHIISQLLEQNFKVIGSVRSqskadkllgqfngnknlsfeiVEDISDLTAFNEVFAKHGKEikYVLHTSspFFTDCDDYEKDL 96 
                    7899*************************9888899************999999889999999999997765543378887644799999999884 PP

                    HHHHHHHTH.H..HHHHHHHHHHCT-EEEEEEEGGGS-S-T CS
  RmlD_sub_bind  72 eaayavnae.a..vealAeaaaavgalLihvStDyVFdGek 109
                        a+n + +     l  aa  v+ ++i  S    Fd +k
     CCD24822.1  97 LVP-ALNGTkGilHSILKYAADTVERVVITSSVAAMFDFTK 136
                    332.2232202113445555666677777777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2695.20
//
Query:       CCD24823.1  [L=87]
Description: hypothetical protein NDAI_0D05100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      0.002   17.1   0.1      0.002   17.1   0.1    1.0  1  MFS_1            Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.068   13.2   2.5      0.078   13.0   2.5    1.0  1  ECF-ribofla_trS  ECF-type riboflavin transporter, S component


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   2.2e-07     0.002     123     172 ..       5      60 ..       1      84 [. 0.70

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.2e-07
       MFS_1 123 igllsagfslGailgpllggllasslg......Wravfyilaivsllafvlfllll 172
                  ++++ g  +G   g + +++++s+ g      Wr+ f+i  i+s++a+++++  l
  CCD24823.1   5 SAFYNFGQYIGLSSGGIQSAVFTSLDGvngmsgWRWNFIIDEIISVVAGIIGFYSL 60 
                 445555555555555555555554444999999*****************844433 PP

>> ECF-ribofla_trS  ECF-type riboflavin transporter, S component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   2.5   8.7e-06     0.078      50      96 ..      10      58 ..       7      72 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.7e-06
                     S--STHHHHHHHHHHHHHHHSS.-G.GGHHHHHHHHHHHHHHHHHH--S CS
  ECF-ribofla_trS 50 fGpvvGflvGaiGsalaDllsg.Yg.iwapftliikgliGlivGliakk 96
                     fG+ +G+ +G+i sa++  l+g  g   + + +ii  +i +++G+i  +
       CCD24823.1 10 FGQYIGLSSGGIQSAVFTSLDGvNGmSGWRWNFIIDEIISVVAGIIGFY 58
                     9****************99999745699****************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 764.38
//
Query:       CCD24824.1  [L=179]
Description: hypothetical protein NDAI_0D05110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 1271.45
//
Query:       CCD24825.1  [L=738]
Description: hypothetical protein NDAI_0D05120, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-08   34.7   0.0    3.4e-08   33.5   0.0    1.5  1  DEAD      DEAD/DEAH box helicase
      0.008   16.2   0.0      0.026   14.5   0.0    1.9  2  ResIII    Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.14   12.5   0.0       0.45   10.8   0.0    1.9  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   5.6e-12   3.4e-08       8     169 ..     492     650 ..     488     656 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.5 bits;  conditional E-value: 5.6e-12
                 HHHHHTTCEEE.EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   8 iplilgggdvl.vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtp 105
                 +++ l+g +++ ++a  G GKT+ f+ip+++  y   g++++  ++ +P   L  ++  +l++++ ++++   l+++g a  ++++     +d++vgt 
  CCD24825.1 492 VEIYLSGTQIIpIQALPGFGKTALFQIPLVALSY---GEQKTVSFVFVPYVCLLSNMKLRLSSCGINCGILKDLFVNGPAV-EEKNL---FCDVYVGTF 583
                 56677777777799****************8887...788889************************99777788888777.33333...49******* PP

                 HHHHH.HH....HCTSSHCTTE..EEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxx.xx....xxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 106 grldd.ll....stgklnlsqv..rflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                   l +  +    ++ +  ++++   ++V+DE ++l  + +++ +  r++ ++     + +l  +v+v++ T+
  CCD24825.1 584 NDLGSeNFvrlvNNWYNIYQDCilGMIVIDEFHNLETEqSYRGQSFRLIPEI-----NFNLAWKVVVMTGTA 650
                 66666322344355553377765588*********98878888888888888.....334445699998886 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.3e-06     0.026      27     168 ..     502     649 ..     480     652 .. 0.77
   2 ?   -3.7   0.1       1.8   1.1e+04      72     110 ..     695     730 ..     684     736 .. 0.45

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.3e-06
                 EEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH...... CS
      ResIII  27 glikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee..e 122
                 + i++  G GKT +  + l++  + ++k    +++vp   ll+ ++ +++++  ++   +  +v+g   ++   ++  ++++v t + l +++  +  +
  CCD24825.1 502 IPIQALPGFGKTALFqIPLVALSYGEQKTVS-FVFVPYVCLLSNMKLRLSSCGINCGILKDLFVNGPAVEE---KNLFCDVYVGTFNDLGSENFVRlvN 596
                 4488889*****9998888888887766544.4568*******************9755666688888887...88889*************9666777 PP

                 ....HHHTTT-SEEEEETGGGTTS.T.....TTHHH..HHT---SEEEEEESS CS
      ResIII 123 eeseellrdrfdviiiDEaHrlgakk.....swrei..lekfkeavllglTAT 168
                 ++ + +++    +i+iDE H+l  ++     s+r i  ++ + + +++ +T+T
  CCD24825.1 597 NWYNIYQDCILGMIVIDEFHNLETEQsyrgqSFRLIpeINFNLAWKVVVMTGT 649
                 777777777777************85344447777766666666777777777 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.8
                 HHGGGGTGG....GEEEESSS-B--.......-SEEEEE CS
      ResIII  72 eefkkflseaykeigkkvsgdkkkakekdstnkkilvtt 110
                 ++f+ f  ++++e  ++v++  +++ ++ +t++k++++ 
  CCD24825.1 695 KKFQAFERSTVAE--TEVEKLVDRF-MEYDTKSKVIIVC 730
                 4555555555533..3333333333.2234444444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.5e-05      0.45      44     105 ..     563     622 ..     496     649 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.5e-05
      AAA_22  44 fvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlr..s 105
                 fv+ p+ ++   ++   +  +++ +++   +  +l++  ++  +++   ++++iDE+++l   +
  CCD24825.1 563 FVNGPAVEEKNLFCDVYVGTFNDLGSE---NFVRLVNNWYNIYQDCIL-GMIVIDEFHNLEteQ 622
                 666666666666677777777765555...888888888888888888.***********5331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 5108.08
//
Query:       CCD24826.1  [L=185]
Description: hypothetical protein NDAI_0E00100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-25   88.9   0.0    4.8e-25   88.4   0.0    1.2  1  Sir1      Regulatory protein Sir1
  ------ inclusion threshold ------
      0.048   13.9   0.1       0.21   11.9   0.1    2.1  2  Reg_prop  Two component regulator propeller
       0.83    9.3   3.3       0.61    9.8   1.0    1.9  2  EABR      TSG101 and ALIX binding domain of CEP55


Domain annotation for each model (and alignments):
>> Sir1  Regulatory protein Sir1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0     8e-29   4.8e-25       8     120 .]       2     112 ..       1     112 [. 0.98

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 8e-29
        Sir1   8 vidgFlVdtekkkkiinpktkklkkl.tkeerekleklklvdldelkkysksdlipvdskeLFelveteerefyetedgliivnkrtkkkkrkesievr 105
                 v  +FlVd+ +k kiinp+++ + +  t+ee+e +e+++l d++ lk   ++++++vds++LF+ +++++++fye+++g +++ + t+ k + + +++r
  CCD24826.1   2 VTGRFLVDIIEK-KIINPNEQHYLRNlTDEEKEYIEECDLLDWNILKL--TKHPYAVDSPQLFDVLNANNEDFYEDKNGDLWIVPPTEYKGELTPRKYR 97 
                 789*********.*********99998*********************..************************************************* PP

        Sir1 106 vipirlkkkkvkYLy 120
                  ip+++k+ +++++y
  CCD24826.1  98 SIPLHFKSFGWRHIY 112
                 *************98 PP

>> Reg_prop  Two component regulator propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.6e-05      0.21       9      20 ..      70      81 ..      62      82 .. 0.85
   2 ?   -3.2   0.0         3   1.8e+04       9      16 ..     177     184 ..     172     184 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
                EEEE-TTSCEEE CS
    Reg_prop  9 aileDsdGrlWv 20
                +++eD++G+lW+
  CCD24826.1 70 DFYEDKNGDLWI 81
                89*********9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 3
                 EEEE-TTS CS
    Reg_prop   9 aileDsdG 16 
                 +++  s+G
  CCD24826.1 177 SLYIASQG 184
                 45555554 PP

>> EABR  TSG101 and ALIX binding domain of CEP55
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.64   3.8e+03       3      11 ..      59      67 ..      58      68 .. 0.84
   2 ?    9.8   1.0    0.0001      0.61      16      28 ..     160     172 ..     159     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.64
        EABR  3 qvkdvlelN 11
                q+ dvl+ N
  CCD24826.1 59 QLFDVLNAN 67
                889999988 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0001
        EABR  16 kYDqsREeYVrgl 28 
                  YDq+R  Y+++ 
  CCD24826.1 160 SYDQQRSYYIKSF 172
                 5**********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1371.91
//
Query:       CCD24827.1  [L=254]
Description: hypothetical protein NDAI_0E00110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.9   2.5       0.12   12.9   0.3    2.2  2  Sir1      Regulatory protein Sir1


Domain annotation for each model (and alignments):
>> Sir1  Regulatory protein Sir1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   6.7e-06      0.12       5      60 ..      12      75 ..       9     124 .. 0.69
   2 ?   -1.5   0.1      0.19   3.4e+03      30      45 ..     199     215 ..     182     229 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.7e-06
        Sir1  5 ryavidgFlVdtekk..........kkiinpktkklkkltkeerekleklklvdldelkkysksdl 60
                ++++idgFl++++ k          k++++p    l k ++++   l kl ++d + +++ +ks l
  CCD24827.1 12 QFTIIDGFLINLNSKvvtdlssddsKTTLTPGGWYLLK-NTYNPMSLTKLYFIDSNYMFT-NKSVL 75
                79************966555554444444444444444.556666666666666655555.44444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.19
        Sir1  30 lkkl.tkeerekleklk 45 
                 +k l +kee++k+++l+
  CCD24827.1 199 IKNLeKKEEQDKVKELE 215
                 23333555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       915  (0.0510346); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1825.19
//
Query:       CCD24828.1  [L=749]
Description: hypothetical protein NDAI_0E00120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-21   75.2   2.0    2.7e-20   73.0   0.0    3.0  3  Ribonuclease_3   Ribonuclease III domain
    1.3e-16   60.9   0.0    2.6e-16   59.9   0.0    1.5  1  Ribonucleas_3_3  Ribonuclease-III-like
    2.1e-14   53.9   0.1    2.7e-06   28.0   0.0    2.6  2  dsrm             Double-stranded RNA binding motif
  ------ inclusion threshold ------
       0.37   10.9   5.4        2.8    8.0   0.9    2.6  3  Lipase_GDSL_3    GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   5.9e-24   2.7e-20       1     103 [.     144     233 ..     144     235 .. 0.91
   2 ?   -0.2   0.1      0.35   1.6e+03      73      97 ..     360     393 ..     317     393 .. 0.69
   3 ?   -2.2   0.0       1.5   6.6e+03      66      66 ..     447     447 ..     407     520 .. 0.56

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 5.9e-24
                     HHHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSHHHHHHHHHCTTCHCCHCHH..............HHCCSTTCHCTSHHHHHHHHH CS
  Ribonuclease_3   1 erLeflGDavlklaittylfetypdahegrlsklrsklvsnenlarlakklglpkflrasefdpprnwlppgyklsddekedddadkvladvvEA 95 
                     erLeflGD+ l  ++   l+++yp a+eg lsk+++++v+n+nl ++ kklg+p+ lr          + p     ++ +++d+++k +ad+vEA
      CCD24828.1 144 ERLEFLGDSWLGALVAYSLYKKYPFANEGALSKMKQAIVNNDNLEKISKKLGFPEKLRG---------NIP----HTSLRKKDKKSKLYADCVEA 225
                     8*********************************************************3.........333....45666677789********* PP

                     HHHHHHHH CS
  Ribonuclease_3  96 liGaiyld 103
                     +iGa+++d
      CCD24828.1 226 YIGALVVD 233
                     *****998 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.35
                     ...........HHCCSTTCHCTSHHHHHHHHHHH CS
  Ribonuclease_3  73 y.........klsddekedddadkvladvvEAli 97 
                                + d+++e++da ++ + +vE+++
      CCD24828.1 360 DddestlalnPAVDSPSEASDAMSSTSALVESVV 393
                     0444444444588999999999999999999986 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.5
                     . CS
  Ribonuclease_3  66 r 66 
                     +
      CCD24828.1 447 T 447
                     1 PP

>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   5.9e-20   2.6e-16       2     119 ..     114     242 ..     113     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 5.9e-20
  Ribonucleas_3_3   2 eelleqaltHkSfan......grk...ghNerLefLGdavLklsvseyllekaek.degeltklraslvseeslaeiAkelgLgkvlrlrkgee 85 
                       +l + a+ H+S  n      +++    +NerLefLGd+ L  +v+  l++k+ + +eg+l+k+++++v++++l++i+k+lg+ + lr + +++
       CCD24828.1 114 ASLENLAFIHRSLPNmnvnltESQrtmMSNERLEFLGDSWLGALVAYSLYKKYPFaNEGALSKMKQAIVNNDNLEKISKKLGFPEKLRGNIPHT 207
                      6788899******6633333322233458***********************99979********************************88788 PP

  Ribonucleas_3_3  86 etegsgrek.vladaleAliGAiyldkgaevaqef 119
                      +++++++++ + ad++eA iGA  +d+  ++ +e+
       CCD24828.1 208 SLRKKDKKSkLYADCVEAYIGALVVDRYSAEFKEV 242
                      8666665555*************999888777776 PP

>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   6.1e-10   2.7e-06       2      65 ..     271     330 ..     270     331 .. 0.89
   2 !   23.3   0.0   1.7e-08   7.7e-05      11      66 ..     689     740 ..     681     741 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 6.1e-10
                 HHHHHHHHHHTT..SEEEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHH CS
        dsrm   2 KskLqeycqkkg..kppnyeyvseegpphslpkFvvtvkvngklygsGvgsnKKeAeqsAAedale 65 
                 K +L e++q ++  k+++y++ ++++p      F+v+v++++ + g Gvg n KeAeq+ A+ ale
  CCD24828.1 271 KGELAEILQFNKlgKKVEYKTLNKKSP------FRVEVRLGNIVLGVGVGDNIKEAEQRSAMFALE 330
                 788899888888778888888888877......*****************************9998 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 1.7e-08
                 HTTSEEEEEEEEEESSTSSSEEEEEEEEETTEEEE..EEEESSHHHHHHHHHHHHHHH CS
        dsrm  11 kkgkppnyeyvseegpphslpkFvvtvkvngklyg..sGvgsnKKeAeqsAAedalek 66 
                 k ++ p+ye+++e+ +      F++ ++++g+ ++  +G+g++KK +++ AA +al++
  CCD24828.1 689 KSNMCPEYETTNEGDG------FYTVCRIKGMGITigEGSGRSKKISQHIAAGNALRN 740
                 5555566665555555......99999998876662266668**************96 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.7   1.2e+04      27      55 ..     121     149 ..     119     151 .. 0.73
   2 ?    8.0   0.9   0.00063       2.8      43     126 ..     384     468 ..     379     489 .. 0.69
   3 ?    4.8   0.2    0.0062        28      86     131 ..     485     532 ..     465     550 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.7
  Lipase_GDSL_3  27 ilsrklgrevvnLgfsGnalleaeladvl 55 
                    +++r l +  vnL  s ++++ +e +++l
     CCD24828.1 121 FIHRSLPNMNVNLTESQRTMMSNERLEFL 149
                    56777777778888888888888777766 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00063
  Lipase_GDSL_3  43 GnalleaeladvlaevdasvfvldllpNasaeeirerleyfvktlrkahPktpillve.dlsttkglvdeklekeveaknkalee 126
                      + l + +++ + +    + ++d+l N+ ++ +++ +  +v+ + +++ +  +l  e +++ t+g+v+ k  k+++++ ++ ++
     CCD24828.1 384 STSALVESVVKEVGDSGNVAVLIDTLMNRMSNVVEQMVSSTVSNILEKKGDVSVLTPElKANSTMGEVEAKNIKRTRKETTNNTQ 468
                    44455556666677777778899**************************999999888345667777776544433333322222 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0062
  Lipase_GDSL_3  86 tlrkahPktpill..vedlsttkglvdeklekeveaknkaleelvkkl 131
                     +   +P+  i++  +e+ +++++++d +++k+v++ n+  +e++ ++
     CCD24828.1 485 PISYDEPDPNIIIinSESEDASESSFDDRRQKRVQTRNDLPNEAFINV 532
                    455555555555511667788999***************999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5269.36
//
Query:       CCD24829.1  [L=350]
Description: hypothetical protein NDAI_0E00130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-20   74.0   0.1    4.6e-20   72.6   0.0    1.7  2  GFO_IDH_MocA    Oxidoreductase family, NAD-binding Rossmann f
    2.9e-08   33.7   0.0    5.5e-08   32.8   0.0    1.4  1  GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta 
  ------ inclusion threshold ------
      0.077   12.6   0.0       0.21   11.2   0.0    1.7  1  BRCA-2_OB3      BRCA2, oligonucleotide/oligosaccharide-bindin


Domain annotation for each model (and alignments):
>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   7.7e-24   4.6e-20       1     113 [.       5     121 ..       5     127 .. 0.95
   2 ?   -1.9   0.0      0.94   5.6e+03      44      81 ..     294     333 ..     277     348 .. 0.55

  Alignments for each domain:
  == domain 1  score: 72.6 bits;  conditional E-value: 7.7e-24
                   EEEEEETTSHH.HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE...EESSHHHHHTCTTESEEEE-S-GGGHHHHHHHHHHTT-EEEEES CS
  GFO_IDH_MocA   1 lrvaiiGaGki.gskhlrplnesqrleevvalldpdaeraeavaesfgve...aysdleelladpeidavivatpngtheelakaaleagkhvllEK 93 
                   l+v+i+G+G +  ++hl++++e  ++ +vva++++ +++a+++a+  g++   +y++l+e+++d+++ ++    p++     +k+a+e +k +llEK
    CCD24829.1   5 LNVGIVGTGIFaRDRHLPSYQEYPNDFKVVAAFNRTKSKAQEFAKIAGIPddkVYDNLDEIMNDKNVSFIDALLPAQFNLSAVKKAIEVNKPILLEK 101
                   69*********88899********************************************************************************* PP

                   SS-SSHHHHHHHHHHHHHHT CS
  GFO_IDH_MocA  94 Plattveeakelvelaekkg 113
                   P+a+t+++a+e+v+l + ++
    CCD24829.1 102 PIAATMAQAREIVQLSDASD 121
                   **************987766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.94
                   HHTTHE.EESSHHHHHTCTTESEEEE-S-G...GGHHHHHHH CS
  GFO_IDH_MocA  44 esfgve.aysdleelladpeidavivatpn...gtheelaka 81 
                   esfgv+  + ++ e ++  + d  ++ + +    +h + + a
    CCD24829.1 294 ESFGVNpEFLNFHEAVS--KNDKSLIKSSPratFHHLACVAA 333
                   66666666666655555..44555555555432223333333 PP

>> GFO_IDH_MocA_C  Oxidoreductase family, C-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   9.1e-12   5.5e-08       8     109 ..     145     245 ..     139     251 .. 0.68

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 9.1e-12
                     TTSSEEEEEE.EEECBEEECHHHHCCGGSH.HCSTSHHHHTCHHHHHHHHHHHTSEEEEEEEEE.SEEESCTCCSCSEEEEEEEEEEETTEE.EE CS
  GFO_IDH_MocA_C   8 klGevvsvdv.wtldtragaeakkrwkrrk.kksgGvlgdlgiHdiDllqwLfGqppsvvaalgrmrqnaeaaededaavmsvlnlekgsge.vi 99 
                     ++G++v+++   t  +  ++ +   ++r+  ++ gG+l d g+H++ l+  L+G+  sv+a++    q+++ ++ +d + +s + + ++++  + 
      CCD24829.1 145 RIGPIVAFTHnSTGPFVSTNKYLATSWRQNpEHIGGFLSDGGVHQLALVTALLGEFESVSALTK---QVRPESGADDIV-FSTVKMRDNNVIgSF 235
                     46666666655555555555555555555558*******************************5...666666665555.455666665544366 PP

                     EEEECCTSSS CS
  GFO_IDH_MocA_C 100 tlesgvskgl 109
                     t++s++  ++
      CCD24829.1 236 TYGSAFGATE 245
                     6666666655 PP

>> BRCA-2_OB3  BRCA2, oligonucleotide/oligosaccharide-binding, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.5e-05      0.21      30      70 ..     252     291 ..     247     293 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.5e-05
                 EE--SSS--EEEEE-TT--EEEEEESS---....SS-.-TT CS
  BRCA-2_OB3  30 vvkkqglapvvyLsdeesnllavkfwsdlkelaledivkpr 70 
                 ++ k+g+  +v Lsd+ + l++v++  ++++ + e+i++++
  CCD24829.1 252 IYGKNGTV-TVELSDKTQPLVKVRIGDSIENAGKEEIFQVE 291
                 54555554.799*************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2706.56
//
Query:       CCD24830.1  [L=172]
Description: hypothetical protein NDAI_0E00140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-32  110.4   0.0    5.6e-32  109.6   0.0    1.4  1  TFIID-18kDa  Transcription initiation factor IID, 18kD subuni
  ------ inclusion threshold ------
      0.027   14.5   0.1      0.037   14.1   0.1    1.2  1  TFIID-31kDa  Transcription initiation factor IID, 31kD subuni
      0.027   14.8   6.0      0.037   14.4   0.0    2.8  3  Histone      Core histone H2A/H2B/H3/H4
          2    8.8  10.4       0.39   11.1   6.7    1.8  2  PBP1_TM      Transmembrane domain of transglycosylase PBP1 at


Domain annotation for each model (and alignments):
>> TFIID-18kDa  Transcription initiation factor IID, 18kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.0   1.2e-35   5.6e-32       1      93 []       9     101 ..       9     101 .. 0.99

  Alignments for each domain:
  == domain 1  score: 109.6 bits;  conditional E-value: 1.2e-35
                  X--CCCCHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC-XXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  TFIID-18kDa   1 slfrkelqsmlyalGdvkePlqetvqlledlvrgyliellqqaakvaklrgsrkitlEDllfliRkDkkKlnRlkellslkellkkakKqfde 93 
                  +lf+k+++s+lya+Gd+++Pl +++q+l++lv+ yl+++++ a ++ak+++++k++lED++f++R D  Kl+R++el+++++l+++akKqf+e
   CCD24830.1   9 HLFSKDVSSLLYAYGDIPHPLPQSIQCLDELVSSYLVDICHVAYQTAKNSQRNKVKLEDFKFAVRNDATKLGRAEELIATNKLITEAKKQFNE 101
                  68*****************************************************************************************97 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   8.2e-06     0.037      25      74 ..      30      79 ..      13     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 8.2e-06
  TFIID-31kDa 25 erVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAiqsrlekq 74
                 ++ ++ L +++  y +++ + A   a+++++++v+l+d ++A+ +  +k 
   CCD24830.1 30 PQSIQCLDELVSSYLVDICHVAYQTAKNSQRNKVKLEDFKFAVRNDATKL 79
                 67788899***********************************9887754 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.86   3.9e+03     113     125 ..       4      16 ..       3      20 .. 0.82
   2 ?   14.4   0.0   8.2e-06     0.037      87     129 ..      31      73 ..      30      75 .. 0.95
   3 ?   -0.2   3.4      0.27   1.2e+03      28      54 ..     141     167 ..     116     172 .] 0.51

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.86
                 HTTXSEEXHHHHH CS
     Histone 113 haKRvTitpkDiq 125
                 + KR  +++kD+ 
  CCD24830.1   4 KLKRTHLFSKDVS 16 
                 579999****997 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 8.2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  87 eavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 +++++l+e++  +lv++   A+ +ak++ R+ +  +D ++A+r
  CCD24830.1  31 QSIQCLDELVSSYLVDICHVAYQTAKNSQRNKVKLEDFKFAVR 73 
                 5799*************************************99 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.27
                 TS-SSSSB--TTT-XTTHHHHHHHHHH CS
     Histone  28 kasskskkkkkrryrpgtvalkeirky 54 
                 k +s++kkk +  ++p+t +  +  k+
  CCD24830.1 141 KLHSSTKKKARMITKPRTTKANKSSKK 167
                 444444444444444444444444443 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       2.3   1.1e+04      24      33 ..      57      66 ..      52      77 .. 0.50
   2 ?   11.1   6.7   8.8e-05      0.39      21      71 ..     101     152 ..      93     159 .. 0.65

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2.3
     PBP1_TM 24 kasrrrrrdd 33
                +++r++++ +
  CCD24830.1 57 NSQRNKVKLE 66
                2333333333 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 8.8e-05
     PBP1_TM  21 arkkasrrrrrdddydd.eyddeedDdddddeeeevprkgkkkkpprkkrrw 71 
                 + +  s +r r++++++ + d++ + +d +de+e+    gk +++ +kk r+
  CCD24830.1 101 ETDSNSLKRYREEEFEEgDDDEDLEGNDMEDENEHQGSTGKLHSSTKKKARM 152
                 44455667999*9999954444444455555555556667777778888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1215  (0.0677673); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1340.15
//
Query:       CCD24831.1  [L=602]
Description: hypothetical protein NDAI_0E00150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-117  392.3   5.5     2e-117  392.3   5.5    2.2  2  ERO1      Endoplasmic Reticulum Oxidoreductin 1 (ERO1)


Domain annotation for each model (and alignments):
>> ERO1  Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.3   5.5  1.1e-121    2e-117       2     354 .]      80     427 ..      79     427 .. 0.91
   2 ?    0.8   0.5     0.013   2.3e+02     157     245 ..     458     490 ..     429     552 .. 0.59

  Alignments for each domain:
  == domain 1  score: 392.3 bits;  conditional E-value: 1.1e-121
        ERO1   2 lrplLkeLvktdfFryfkvnldkeCpfweddeglCanraCavee.ceeeeiPekwraeelsklertlseeeesavkeakeeeeaeee...........d 88 
                 +r++L++Lv+tdfF+yfk++++k+Cpfw+d+++lC+  +C+++  ++++++Pe+w+ e+ls+l++++++++e+ v++ +  ++ +++           d
  CCD24831.1  80 IRNDLQSLVNTDFFKYFKLDIYKQCPFWDDSNRLCTDGSCSIDIvEDWSKLPEYWQPEHLSELKDPSNSSDEDLVTDCSFLDQLCNDnkklqymqndiD 178
                 7899***************************************98999******************996666666665555544444344555555558 PP

        ERO1  89 yceledeeeeeavyvdLlenperfTgYkGesaervWkaiYeencfkeeseseeseekeleelclekrvfyrliSGlhasisihlaaeylnqetgewepn 187
                 yc++++ e++e+v +dL++nperfTgY G++++++Wk iY encf+ +          ++++cl k++fyrl+SGlhasi +h+++e+ln+etg+w+pn
  CCD24831.1 179 YCDVNEFESKESVLIDLTKNPERFTGYGGQQSANIWKHIYGENCFSMD----------TQGKCLAKDAFYRLVSGLHASIGVHISNEMLNSETGQWGPN 267
                 *********************************************654..........5799************************************* PP

        ERO1 188 lelfkervgkhperlenlYfnyalvlrAvaklapyleelefstgeeeedeetkellkeelakellsalsskekafdesklfkdkeeaeelkeefrerfr 286
                 le+f++rvg++p+r++n+Yfnya+v+++++k+ p+l++l+f++   e d+++k ++ + +     s+l+  +++f+e+ lfk ++ + +lk+efr+rf+
  CCD24831.1 268 LEFFMSRVGNFPDRITNIYFNYAVVAKSLWKIMPFLKHLDFCN---EYDNDVKGKIINIT-----SQLD--SNIFQEDLLFK-NDLDYSLKDEFRSRFK 355
                 ******************************************7...88888888855544.....3333..36*********.89************** PP

        ERO1 287 nisrimdCVgCekCrLwGKlqttGlgtAlkilfeeeekeeek....klkLernevvALintlerlseSieav 354
                 n+++imdCV+C+ CrLwGK+qttG++t+lkilfe +e++ee+     +kL+++e++AL+nt++rls++iea+
  CCD24831.1 356 NVTKIMDCVDCDTCRLWGKVQTTGYATSLKILFEFDEADEESrqnvVDKLTKYELIALLNTFDRLSQAIEAI 427
                 ***********************************9998887899999*********************987 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.013
        ERO1 157 fyrliSGlhasisihlaaeylnqetgewepnlelfkervgkhperlenlYfnyalvlrAvaklapyleelefstgeeeedeetkellke 245
                 f+rl+ G                                                       +++y+++ +fs++++e++e tk+ +++
  CCD24831.1 458 FFRLLKG-------------------------------------------------------AKDYINN-NFSSSNAEQEEITKRDVNK 490
                 4444444.......................................................4444444.4444455555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1263  (0.0704445); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4250.86
//
Query:       CCD24832.1  [L=250]
Description: hypothetical protein NDAI_0E00160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.4e-58  195.4   0.0    8.1e-58  195.0   0.0    1.1  1  Proteasome      Proteasome subunit
    1.4e-09   37.5   0.2    4.7e-09   35.8   0.1    1.9  2  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.0   0.0     9e-62   8.1e-58       1     190 []      28     214 ..      28     214 .. 0.98

  Alignments for each domain:
  == domain 1  score: 195.0 bits;  conditional E-value: 9e-62
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHH.HHHHHHSSGTCHHHHHHHHHHHHHHHHHH CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaq.lyrlrygrpipverlvarvaaklqaytqr 98 
                 v++G t++Gik+++g+v+a++k+++  s l+ ++t++K+  i++ ig++++G+ +D+r+lv++ r+ a+ +y+  yg+ +p++ lv+++a+ +q+ tq+
  CCD24832.1  28 VNQGVTSIGIKATNGIVIATEKKSS--SPLALTETLSKVELITPDIGAVYSGMGPDYRVLVDKSRKVAHsNYKRIYGEYPPTKLLVSEIAKIMQEATQS 124
                 789**********************..99999**********************************998578899************************ PP

                 CTTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome  99 sgrrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 +g+rpfgvsll+ag de+ g +Lyq+dpsGsy+ +k a+aiG+gs aakt+lek+++++l+le+a+++a+ +lke++e++ ++g++ie+avi
  CCD24832.1 125 GGVRPFGVSLLVAGHDEHRGFSLYQVDPSGSYFPWK-ATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGE-FNGDTIEIAVI 214
                 ***********************************8.*****************************************77.*********97 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   5.2e-13   4.7e-09       1      23 []       5      27 ..       5      27 .. 0.97
   2 ?   -1.1   0.0      0.18   1.6e+03      14      18 ..     147     151 ..     146     151 .. 0.88

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 5.2e-13
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    Y +slttFSP+G+L Q++YA+ A
      CCD24832.1  5 YSFSLTTFSPSGKLGQIDYALTA 27
                    99******************988 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.18
  Proteasome_A_N  14 LfQVE 18 
                     L+QV+
      CCD24832.1 147 LYQVD 151
                     9***7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       386  (0.0215294); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1815.27
//
Query:       CCD24833.1  [L=63]
Description: hypothetical protein NDAI_0E00170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-22   78.6   1.8    2.5e-22   78.4   1.8    1.0  1  COX14     Cytochrome oxidase c assembly


Domain annotation for each model (and alignments):
>> COX14  Cytochrome oxidase c assembly
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   1.8   1.4e-26   2.5e-22       1      55 [.       2      52 ..       2      56 .. 0.93

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 1.4e-26
       COX14  1 akyargrrlaDkaHrltVltLiGvTlyaggllvytvysygkynrkqkaelierek 55
                a+ya+++r++D++HrltVltL+G+Tly++g l+yt y++gk+++kq +    +++
  CCD24833.1  2 ARYAWYTRVTDTLHRLTVLTLVGGTLYMSGALAYTLYMNGKRYEKQVT----QKE 52
                68*********************************************9....665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 498.40
//
Query:       CCD24834.1  [L=502]
Description: hypothetical protein NDAI_0E00180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-45  153.1  37.8    8.4e-11   42.0   0.0    6.8  6  Ish1      Putative stress-responsive nuclear envelope protein
  ------ inclusion threshold ------
       0.11   12.3   0.1        1.9    8.3   0.0    3.2  3  SAP       SAP domain
       0.17   12.0   9.2        5.9    7.1   0.2    4.8  5  SAM_2     SAM domain (Sterile alpha motif)
       0.18   12.3   4.6         42    4.7   0.0    4.3  4  DUF4286   Domain of unknown function (DUF4286)
       0.29   11.3  11.9       0.54   10.4   0.1    4.5  5  GP52      Phage gene product 52
        1.6    9.3  18.8         17    6.0   0.3    6.0  6  YtxH      YtxH-like protein
        2.4    8.7   7.2         14    6.2   0.1    3.9  4  SAM_1     SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> Ish1  Putative stress-responsive nuclear envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   1.1   9.5e-06     0.024       1      16 [.      34      49 ..      34      66 .. 0.92
   2 !   25.2   2.7   5.7e-09   1.4e-05       1      37 []     111     146 ..     111     146 .. 0.97
   3 !   32.5   2.2     3e-11   7.7e-08       1      37 []     166     203 ..     166     203 .. 0.96
   4 !   37.3   3.2   9.7e-13   2.5e-09       1      37 []     241     278 ..     241     278 .. 0.98
   5 !   20.9   0.2   1.3e-07   0.00032       2      36 ..     343     376 ..     343     377 .. 0.97
   6 !   42.0   0.0   3.3e-14   8.4e-11       1      37 []     433     468 ..     433     468 .. 0.98

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 9.5e-06
        Ish1  1 FdtWSdsdLkkWLdsh 16
                FdtW+++dLk++ ++h
  CCD24834.1 34 FDTWTEDDLKDYVNDH 49
                9***********7776 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 5.7e-09
        Ish1   1 FdtWSdsdLkkWLdshGipvskaastRdeLlklardn 37 
                 F++WS++dL+k+L ++ i++ +a  ++d +++la+++
  CCD24834.1 111 FNSWSKDDLHKYLLKNRIKA-DANDSKDAMVQLAKKY 146
                 9******************5.**************98 PP

  == domain 3  score: 32.5 bits;  conditional E-value: 3e-11
        Ish1   1 FdtWSdsdLkkWLdshGip.vskaastRdeLlklardn 37 
                 F++WS +dL +WLd+++i  + ++  ++++L +l+r+n
  CCD24834.1 166 FKDWSVEDLTNWLDKYKISyKRDMINKKEDLMHLVRKN 203
                 89*****************9889999***********8 PP

  == domain 4  score: 37.3 bits;  conditional E-value: 9.7e-13
        Ish1   1 FdtWSdsdLkkWLdshGip.vskaastRdeLlklardn 37 
                 FdtWS +dL kWL+sh ++ ++k   ++d+L+++a dn
  CCD24834.1 241 FDTWSSNDLEKWLESHDVQlDEKLMHSHDYLVEQANDN 278
                 9***********************************98 PP

  == domain 5  score: 20.9 bits;  conditional E-value: 1.3e-07
        Ish1   2 dtWSdsdLkkWLdshGipvskaastRdeLlklard 36 
                 d+WS+ +Lk++Ld   i   ++ +t+ +L++++rd
  CCD24834.1 343 DDWSKGRLKEFLDIRDID-YSMFATKKDLIQKVRD 376
                 89****************.7**************8 PP

  == domain 6  score: 42.0 bits;  conditional E-value: 3.3e-14
        Ish1   1 FdtWSdsdLkkWLdshGipvskaastRdeLlklardn 37 
                 F+ WS +dLk++L+s+Gi   k++stR+e+++ a++n
  CCD24834.1 433 FENWSQDDLKAYLESFGIRM-KPTSTREEMIQSAKEN 468
                 899****************9.**************98 PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.96   2.4e+03       2      12 ..      35      45 ..      34      45 .. 0.84
   2 ?   -1.8   0.1       1.1   2.8e+03      23      32 ..     366     375 ..     366     377 .. 0.82
   3 ?    8.3   0.0   0.00076       1.9       1      19 [.     433     451 ..     433     466 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.96
                TT--HHHHHHH CS
         SAP  2 skltVaeLKee 12
                 ++t ++LK++
  CCD24834.1 35 DTWTEDDLKDY 45
                689******85 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                 -HHHHHHHHH CS
         SAP  23 kKaeLieRLk 32 
                 +K++Li+ ++
  CCD24834.1 366 TKKDLIQKVR 375
                 79****9876 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00076
                 HTT--HHHHHHHHHHTT-- CS
         SAP   1 lskltVaeLKeeLkkrGLp 19 
                 +++++ ++LK++L+++G++
  CCD24834.1 433 FENWSQDDLKAYLESFGIR 451
                 579**************96 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       3.5   8.9e+03       3      13 ..      36      46 ..      35      53 .. 0.77
   2 ?   -1.9   0.1       1.5   3.9e+03       7      14 ..     104     111 ..     102     123 .. 0.60
   3 ?    3.6   0.1     0.028        72       4      15 ..     169     182 ..     167     192 .. 0.80
   4 ?    7.1   0.2    0.0023       5.9       2      18 ..     242     258 ..     241     270 .. 0.87
   5 ?    3.5   0.0      0.03        76       2      17 ..     434     449 ..     433     455 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.5
                GHHHHHHHHHH CS
       SAM_2  3 swsledvaeWL 13
                +w+ +d+ +++
  CCD24834.1 36 TWTEDDLKDYV 46
                78888888887 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.5
                 HHHHHHHH CS
       SAM_2   7 edvaeWLr 14 
                 ed+++WL 
  CCD24834.1 104 EDISDWLF 111
                 66777764 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.028
                 HHHHHHHHHHH..H CS
       SAM_2   4 wsledvaeWLr..s 15 
                 ws+ed+++WL+  +
  CCD24834.1 169 WSVEDLTNWLDkyK 182
                 **********9444 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0023
                 GGHHHHHHHHHHHHTTT CS
       SAM_2   2 eswsledvaeWLrsigl 18 
                 ++ws++d+ +WL+s++ 
  CCD24834.1 242 DTWSSNDLEKWLESHDV 258
                 79************986 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.03
                 GGHHHHHHHHHHHHTT CS
       SAM_2   2 eswsledvaeWLrsig 17 
                 e+ws++d+  +L+s g
  CCD24834.1 434 ENWSQDDLKAYLESFG 449
                 79***********876 PP

>> DUF4286  Domain of unknown function (DUF4286)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.016        42      44      81 ..      21      58 ..      13      64 .. 0.83
   2 ?   -0.2   0.1      0.57   1.5e+03      61      86 ..     170     195 ..     152     206 .. 0.79
   3 ?    4.6   0.1     0.018        47      57      84 ..     241     268 ..     225     273 .. 0.89
   4 ?    0.1   0.0      0.46   1.2e+03      53      77 ..     429     453 ..     405     459 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.016
     DUF4286 44 eeeeeegktysvqyeveseedleayieehapelreell 81
                +++ +++++ ++ + + +e+dl++y+++h ++l++  +
  CCD24834.1 21 SSSSSSSENSVFPFDTWTEDDLKDYVNDHMNNLKDIST 58
                45667777889999999****************98765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.57
     DUF4286  61 seedleayieehapelreellekFgd 86 
                 s edl+++++++    ++++++k +d
  CCD24834.1 170 SVEDLTNWLDKYKISYKRDMINKKED 195
                 67899999999999999888877555 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.018
     DUF4286  57 yeveseedleayieehapelreellekF 84 
                 + + s++dle+++e h  +l e+l++ +
  CCD24834.1 241 FDTWSSNDLEKWLESHDVQLDEKLMHSH 268
                 677899*****************99876 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.46
     DUF4286  53 ysvqyeveseedleayieehapelr 77 
                 +   +e  s++dl+ay+e ++ +++
  CCD24834.1 429 WYETFENWSQDDLKAYLESFGIRMK 453
                 5556777799999999999998876 PP

>> GP52  Phage gene product 52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.029        75      36      48 ..      35      47 ..      29      51 .. 0.86
   2 ?    1.9   0.1       0.1   2.6e+02      36      47 ..     112     123 ..     107     124 .. 0.85
   3 ?   -2.5   0.1       2.3   5.9e+03      36      46 ..     167     177 ..     161     179 .. 0.80
   4 ?   -0.7   0.1      0.66   1.7e+03      35      46 ..     241     252 ..     236     255 .. 0.82
   5 ?   10.4   0.1   0.00021      0.54      34      47 ..     432     445 ..     421     450 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.029
        GP52 36 enwsqedlelyvG 48
                + w+ +dl+ yv 
  CCD24834.1 35 DTWTEDDLKDYVN 47
                68*********95 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.1
        GP52  36 enwsqedlelyv 47 
                 + ws++dl +y+
  CCD24834.1 112 NSWSKDDLHKYL 123
                 68*******995 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.3
        GP52  36 enwsqedlely 46 
                  +ws edl  +
  CCD24834.1 167 KDWSVEDLTNW 177
                 68*****9765 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.66
        GP52  35 lenwsqedlely 46 
                 ++ ws +dle++
  CCD24834.1 241 FDTWSSNDLEKW 252
                 578******987 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00021
        GP52  34 rlenwsqedlelyv 47 
                  +enwsq+dl+ y+
  CCD24834.1 432 TFENWSQDDLKAYL 445
                 48*********997 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1     0.052   1.3e+02      27      54 ..      39      66 ..      37      77 .. 0.68
   2 ?    2.1   0.3      0.11   2.8e+02      27      62 ..     125     153 ..     117     168 .. 0.71
   3 ?   -0.8   0.1       0.9   2.3e+03      52      72 ..     211     238 ..     170     245 .. 0.54
   4 ?    6.0   0.3    0.0067        17      34      72 ..     279     335 ..     263     337 .. 0.68
   5 ?    4.8   0.3     0.016        40      26      73 ..     366     424 ..     365     426 .. 0.62
   6 ?    4.9   0.1     0.015        39      29      66 ..     413     468 ..     411     495 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.052
        YtxH 27 Rkdlkekaddlkekakelleeakekake 54
                 +dlk++++d  +++k++ ++  +  k 
  CCD24834.1 39 EDDLKDYVNDHMNNLKDISTKSLDDLKA 66
                6789999999999998887554444333 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.11
        YtxH  27 Rkdlkekaddlkekakelleeakekakekaedlkek 62 
                 ++++k  a+d+k+ + +l+       k+ ++d+++k
  CCD24834.1 125 KNRIKADANDSKDAMVQLA-------KKYFKDISKK 153
                 5667777777777776665.......5555555554 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.9
        YtxH  52 a.......kekaedlkekvkekadelke 72 
                 +        ++ + + +++ +ka elke
  CCD24834.1 211 VekerlnlLDSMDLANKQFLNKAGELKE 238
                 1333344444455555555555555554 PP

  == domain 4  score: 6.0 bits;  conditional E-value: 0.0067
        YtxH  34 addlkekakelleeakeka..................kekaedlkekvkekadelke 72 
                 ++ lk++++ +l+ +k+k+                  ++ ++d+ +k k+k++e+ +
  CCD24834.1 279 YSLLKDDINWYLKYLKKKTtpfmekspenvdstwksvTSAGQDMYSKTKKKTNEVIN 335
                 555555555555555555555555555555888888788899999999999888865 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.016
        YtxH  26 tRkdlkekaddlkekakelleeakeka..............kekaedlkekvkekadelkek 73 
                 t+kdl +k+ d+++ +   l ++k+++              ++++++ ++ +++ka ++kek
  CCD24834.1 366 TKKDLIQKVRDSRNAP---LRKLKDNMisfkdwscekrgemASQVTEGMDMASKKAGDMKEK 424
                 6677777766666666...5555666666666665555777777777777777777777776 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.015
        YtxH  29 dlkekaddlkekakelleeakeka..................kekaedlkekvkek 66 
                  +++ka d+kek+ e+ +e+ e+                   +++ e++ +++ke 
  CCD24834.1 413 MASKKAGDMKEKFGEIWYETFENWsqddlkaylesfgirmkpTSTREEMIQSAKEN 468
                 57899***********9999999897777777777777777766666666666665 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       3.6   9.3e+03      38      45 ..      38      45 ..      34      65 .. 0.63
   2 ?    6.2   0.1    0.0054        14       2      18 ..     168     184 ..     167     202 .. 0.79
   3 ?    3.9   0.2      0.03        76       1      17 [.     242     258 ..     242     267 .. 0.89
   4 ?   -0.8   0.0      0.87   2.2e+03       2      16 ..     435     449 ..     414     453 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.6
                CHHHHHHC CS
       SAM_1 38 teddLekl 45
                teddL+++
  CCD24834.1 38 TEDDLKDY 45
                55555552 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0054
                 CTTHSSHHHHHHHTTSG CS
       SAM_1   2 kwsvedVgeWLesiglg 18 
                  wsved+++WL++ + +
  CCD24834.1 168 DWSVEDLTNWLDKYKIS 184
                 6***********98765 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.03
                 CCTTHSSHHHHHHHTTS CS
       SAM_1   1 skwsvedVgeWLesigl 17 
                 ++ws +d+  WLes + 
  CCD24834.1 242 DTWSSNDLEKWLESHDV 258
                 68************875 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.87
                 CTTHSSHHHHHHHTT CS
       SAM_1   2 kwsvedVgeWLesig 16 
                 +ws++d+   Les+g
  CCD24834.1 435 NWSQDDLKAYLESFG 449
                 566666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1264  (0.0705003); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3453.82
//
Query:       CCD24835.1  [L=602]
Description: hypothetical protein NDAI_0E00190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0026   18.3   0.5      0.084   13.4   0.0    2.3  2  Peptidase_M4  Thermolysin metallopeptidase, catalytic domain


Domain annotation for each model (and alignments):
>> Peptidase_M4  Thermolysin metallopeptidase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.7     0.014   2.4e+02      30      74 ..      24      65 ..      13      97 .. 0.66
   2 !   13.4   0.0   4.7e-06     0.084      68     117 ..     430     478 ..     416     489 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.014
                  S.EEEEE-TTSS.TT.-SS-EE-EECTTEC-HHH-HHHHHHHHHHH CS
  Peptidase_M4 30 r.iktydlnnktssskelagtlvtssnnafsegnetaavdAhygaa 74
                     +t+d+nn++++++ ++g+  +++nn+fs+      v +++  +
    CCD24835.1 24 IpQQTLDANNNNNNNNVITGD-DNNNNNTFSNII---PVPIKVSRQ 65
                  357899999999877765555.477888888543...444444444 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.7e-06
                   HHHHHHHHHHHHHHHHHSS-TTTSS-S-EEEEECETTT---EEE-SSEEE CS
  Peptidase_M4  68 dAhygaakvydyYknkfgrnsidnkgaklksrVhygknyeNAfwdgsqmt 117
                   dA +     +  Y+ kf+ ++i+++g+kl + V++ kn++NAf d s+m+
    CCD24835.1 430 DAEFTQIALWRAYEAKFS-QPIRESGRKLLAAVEFIKNVSNAFHDASAMV 478
                   89999999999*****97.699*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.23s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4387.95
//
Query:       CCD24836.1  [L=314]
Description: hypothetical protein NDAI_0E00200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-29  101.6   0.0    4.4e-29  100.7   0.0    1.4  1  FAD_binding_6  Oxidoreductase FAD-binding domain
    2.8e-27   95.5   0.0    4.2e-27   95.0   0.0    1.3  1  NAD_binding_1  Oxidoreductase NAD-binding domain
    1.6e-05   25.0   0.0    0.00021   21.4   0.0    2.1  2  NAD_binding_6  Ferric reductase NAD binding domain
  ------ inclusion threshold ------
        7.6    6.6   7.7       0.82    9.7   0.9    2.2  2  DUF1656        Protein of unknown function (DUF1656)


Domain annotation for each model (and alignments):
>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   9.9e-33   4.4e-29       2      99 .]      77     174 ..      76     174 .. 0.98

  Alignments for each domain:
  == domain 1  score: 100.7 bits;  conditional E-value: 9.9e-33
                    EEEEEEEECCTTEEEEEEEESTTTS-----TT-EEEEEECETTCCEEEEEE.BSSTTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE-SE CS
  FAD_binding_6   2 lkltekeevsedtrifrfklpsekqklglpvGqhvflrlkikgeaviRsYtpissenekGelellvkvypgGkmsqaLdelkigdtleikGPlGkf 97 
                    l+l++++ +s++t+ +rfkl+++ ++l++p+G h+++r+ i+g++ iR+Y+piss+ +kG+++ll+k y++Gk+s+++  lk+g+++e+kGP+G++
     CCD24836.1  77 LELEDQTVISKNTALYRFKLKTPLESLNIPAGFHIAARVFIDGKEEIRYYNPISSKLDKGYFDLLIKSYADGKVSKYFAGLKPGESVEFKGPIGEL 172
                    6899*******************************************************************************************9 PP

                    EC CS
  FAD_binding_6  98 eY 99 
                    +Y
     CCD24836.1 173 NY 174
                    98 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   9.3e-31   4.2e-27       2     107 ..     185     289 ..     184     291 .. 0.97

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 9.3e-31
                    EEEGGGGHHHHHHHHHHHHHCTTCSEEEEEEEESSGCGSTTHHHHHHHHHHCTTEEEEEEEESSCTTTSSSEESSHHHHHHHHHHHHSSTTEEEEE CS
  NAD_binding_1   2 iagGtGiaPvrsvlraileeakdktkvvlvyGnrteedllyreeleelakklpgrlkvvavvsreeagweggkgrvqdalleellslkkeethvyv 97 
                    +agG+Gi+Pv+++l++i+  ++d tkv l+y+n te+d+l+++el+e+akk+p+ + + +vv+ ++++w+g  g v+ + ++++l+ +++++ +++
     CCD24836.1 185 VAGGSGITPVLQMLNEIITTPEDLTKVSLIYANDTENDILLKDELDEMAKKYPH-FDIHYVVRYPSETWKGDVGLVTREQMQKYLPESSDDHRLLI 279
                    8*****************************************************.9******************************999******* PP

                    ECSHHHHHHH CS
  NAD_binding_1  98 CGppgMikav 107
                    CGp+gM+++v
     CCD24836.1 280 CGPEGMENMV 289
                    *******998 PP

>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   4.7e-08   0.00021       3      65 ..     181     238 ..     179     266 .. 0.85
   2 ?    1.5   0.0     0.064   2.9e+02     138     155 ..     276     293 ..     260     294 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 4.7e-08
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   3 nvllvagGiGitpfisilkdllkkskkealktkkikliwvvressslewfkdvLneleeekse 65 
                    ++ +vagG+Gitp++ +l +++ + +    + +k++li ++  ++++ ++kd L+e++++ + 
     CCD24836.1 181 ALAIVAGGSGITPVLQMLNEIITTPE----DLTKVSLIYANDTENDI-LLKDELDEMAKKYPH 238
                    799**********************9....9********99888887.667788888776655 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.064
                    xxxxxxxxxxxxxxxxxx RF
  NAD_binding_6 138 gvfvCGppklvkevkklv 155
                     +++CGp+++ + v +++
     CCD24836.1 276 RLLICGPEGMENMVVNYA 293
                    5789*******9999886 PP

>> DUF1656  Protein of unknown function (DUF1656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.9   0.00018      0.82       4      24 ..      18      38 ..      17      39 .. 0.92
   2 ?    0.1   1.0      0.18   8.2e+02      14      31 ..      45      62 ..      43      66 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00018
     DUF1656  4 lgGvyvPpllvlallAllltl 24
                + G+y+P+ l+++ +All++l
  CCD24836.1 18 IHGIYIPTALFVFGIALLTYL 38
                78***************9875 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.18
     DUF1656 14 vlallAllltlllrrlla 31
                +lal  l+++l++r lla
  CCD24836.1 45 LLALPILFTSLVVRALLA 62
                666666777788888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2381.76
//
Query:       CCD24837.1  [L=613]
Description: hypothetical protein NDAI_0E00210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-44  150.0  17.9    3.2e-42  145.0  17.9    2.0  1  Sugar_tr  Sugar (and other) transporter
    3.5e-23   82.1  14.9    8.5e-15   54.5  11.5    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.017   15.2   2.5        7.1    6.8   0.8    3.5  3  DUF1206   Domain of Unknown Function (DUF1206)
       0.12   12.0   0.7        1.2    8.8   0.0    2.4  2  DUF3341   Protein of unknown function (DUF3341)
       0.22   10.4   0.0       0.43    9.5   0.0    1.4  1  FAM178    Family of unknown function, FAM178


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0  17.9   8.8e-46   3.2e-42       3     452 .]      78     580 ..      76     580 .. 0.82

  Alignments for each domain:
  == domain 1  score: 145.0 bits;  conditional E-value: 8.8e-46
                 HHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT.. CS
    Sugar_tr   3 lvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk.. 99 
                 l+a +g l   Yd++ i+  ++++++++  g   s++  +      +l+  +++vG +iG++ +g+++d++GRkk++    +l+++ ++lq ++ +   
  CCD24837.1  78 LIAGVGFLTDSYDIFAINLGISMMSYVYWAGNMPSST--N------TLLKVSTSVGTVIGQIGFGTMADIMGRKKIYGLELILMIVTTILQCMTGSSps 168
                 45556668889**************888888777775..4......489999***************************99999999999999887777 PP

                 .SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-...................TTHHHHHHHCC CS
    Sugar_tr 100 .nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglgl.nktsn...................adgwrillglq 177
                  n v +l++ R+++Gig+G+ + l+++ +sE++++k+Rga+++      ++G++++ i+ l+l + ++                    ++ wril+g+ 
  CCD24837.1 169 iNFVAILTFYRIVMGIGIGGDYPLSSIITSEFSTTKWRGAIMGAVFANQAWGQILGGIVALILvAAYKPmligaetgdmcgpdcikacDQMWRILVGIG 267
                 7888888999*****************************************************788887*******************9********** PP

                 HHHHHHHHHHGGGS---HHHHHHTT-HH..HHHHHHHH..HHHC..........HHHHHHHHHHHHHHHHHHH.............HTTHHHHSH.... CS
    Sugar_tr 178 lvpallllilllflPESPrylvekgkee..eakevlak..lrge..........edadrelaeekdsleaeqeee........kaswkellsskt..vr 252
                 +vp l+ l+++l++PESPry + ++  +  e+ e  +   ++++          +++d + ++  +sl +e+++         kas k +   ++    
  CCD24837.1 268 AVPGLIGLYFRLTIPESPRYSLDVDAASdlESIEYTKVeiIDEKqltssastssKLNDNNSNNDLTSLSREKTAVermeikppKASFKDFCHHFGqwKY 366
                 *********************999987733443333335433224555555566444444444444444443333677788999999999988887645 PP

                 .HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH..........HHHHHHHHHHHHHHHHHH.HHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHH CS
    Sugar_tr 253 qrlligvvlqifqqltGinaimyysptifenlglsks..........llvtiivgvvnfvatfva.iflvdrfGRRtllllGaagmaicfvilgivall 340
                  ++l+g +  +f   +    +     +i++++g+  s          +++++i+++   +    a +f++d +GR+++ l+G+++ +i+f+i+g   ++
  CCD24837.1 367 GKILLGTAGSWFMLDVAFYGLSLNTAVILQTIGFASSenvykklynsAVGNLILICAGSLPGYWAsVFTIDIVGRKPIQLMGFIILTILFCIIG---FA 462
                 5677776666666666666666667789999999999999999888889999999988887766659**************************9...78 PP

                 HTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH..........T-HHHHHHHHHHHHH CS
    Sugar_tr 341 lvakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaig..........ggyvflvfaglavlf 429
                 +++ s    ++++ +++l  ++ ++g++ + +++  E fp++ Rs+a  i++a+  +  ++ ++    + ++             + v  +fa +++l+
  CCD24837.1 463 YNKIS---DGGLLGLYILCQFFQNFGPNVTTFIVPGECFPTRYRSTAHGISAASGKIGAIIAQTALGSLIDHNCardgkpkncwLPHVMQIFALFMLLG 558
                 88876...788888888888999***************************************9987665554444999999666666667777777766 PP

                 HHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 430 iifvfffvpetkgrtleeieelf 452
                 i+ + + +petk  tleei+e +
  CCD24837.1 559 IFLT-LLIPETKRMTLEEINEKY 580
                 6555.579***********9975 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5  11.5   2.4e-18   8.5e-15      26     259 ..     109     422 ..      78     433 .. 0.74
   2 !   28.7   0.6   1.6e-10   5.9e-07      54     187 ..     434     578 ..     413     597 .. 0.74

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 2.4e-18
       MFS_1  26 dlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllll.fa.....sslw.lllvlrvlqGlgagalfpagaaliadwfpke 117
                 +  +  s+  ll +  ++g++++++ +G ++d +Gr++++ l l+l++++ ++l  ++     +++  +l + r+++G+g g+ +p++ +++++ ++ +
  CCD24837.1 109 N--MPSSTNTLLKVSTSVGTVIGQIGFGTMADIMGRKKIYGLELILMIVT-TILQcMTgsspsINFVaILTFYRIVMGIGIGGDYPLSSIITSEFSTTK 204
                 3..44455555666699*********************************.777767445567889999****************************** PP

       MFS_1 118 ergraigllsagfslGailgpllggllasslg.......................Wravfyilaivsllafvlfllllpeepperkrkspkeee..... 188
                  rg  +g + a  + G ilg +++ +l++++                        Wr +  i a+ +l++ + f l +pe+p+ +  +  + ++     
  CCD24837.1 205 WRGAIMGAVFANQAWGQILGGIVALILVAAYKpmligaetgdmcgpdcikacdqmWRILVGIGAVPGLIG-LYFRLTIPESPRYSLDVDAASDLesiey 302
                 ****************************9999*************************************8.5577788888888888888887799999 PP

       MFS_1 189 ...........................................kgtgpaplvpawkallkdpvlw.......illialllfffgfsglltllplylqev 237
                                                            +    +p +  +k ++++   w           ++++  ++f+gl+  + ++  ++
  CCD24837.1 303 tkveiidekqltssastssklndnnsnndltslsrektavermE---IKPPKASFKDFCHHFGQWkygkillGTAGSWFMLDVAFYGLSLNTAVI-LQT 397
                 99999999999999999999999998888888777777774331...222222344444444445444311144444444444455566666665.777 PP

       MFS_1 238 lgls...glllaglllallalvgai 259
                  g++   +++  ++ +a++ l+ ++
  CCD24837.1 398 IGFAsseNVYKKLYNSAVGNLILIC 422
                 7777666333333334444444444 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 1.6e-10
       MFS_1  54 rlsdrfGrrrvlllglllfalglllllfa......sslw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailg.pllggll 144
                 + +d +Gr+++ l+g++++ + ++++ fa       +l  l +++ ++q +g    + +  ++  + fp + r+ a g+ +a+  +Gai++  +lg+l+
  CCD24837.1 434 FTIDIVGRKPIQLMGFIILTILFCIIGFAynkisdGGLLgLYILCQFFQNFGP---NVTTFIVPGECFPTRYRSTAHGISAASGKIGAIIAqTALGSLI 529
                 338899****9999999999996666687666556567778888888888886...888889999**************************55555555 PP

       MFS_1 145 asslg.........Wravfyilaivsllafvlfllllpeepperkrkspkee 187
                  ++            + v+ i+a+++ll++    l l+ ++++r + +++ e
  CCD24837.1 530 DHNCArdgkpkncwLPHVMQIFALFMLLGIF---LTLLIPETKRMTLEEINE 578
                 555559*******889999999999999966...444444444444444433 PP

>> DUF1206  Domain of Unknown Function (DUF1206)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.8     0.002       7.1      39      59 ..     214     234 ..     200     239 .. 0.90
   2 ?    5.5   0.0     0.005        18      31      54 ..     353     376 ..     346     387 .. 0.85
   3 ?   -2.7   0.0       1.8   6.6e+03      13      24 ..     516     527 ..     511     538 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.002
     DUF1206  39 lleqpfGrvllglvglgllgy 59 
                 ++ q +G++l g+v+l+l+++
  CCD24837.1 214 FANQAWGQILGGIVALILVAA 234
                 6899**************986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.005
     DUF1206  31 gsdgalatlleqpfGrvllglvgl 54 
                 + +++ ++++++ +G++llg +g 
  CCD24837.1 353 SFKDFCHHFGQWKYGKILLGTAGS 376
                 6688999*************9986 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.8
     DUF1206  13 lgllalqaalgg 24 
                 +g++++q+alg+
  CCD24837.1 516 IGAIIAQTALGS 527
                 566666666654 PP

>> DUF3341  Protein of unknown function (DUF3341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.0       0.2   7.1e+02      65     119 ..     423     481 ..     409     491 .. 0.66
   2 ?    8.8   0.0   0.00033       1.2      60     110 ..     513     564 ..     502     596 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.2
                 HHHHHHIIIIISS---STT--SS-HHHHHHHHTHHHHHHHHH.....HHHHTTTTTT-S- CS
     DUF3341  65 alllqvytsvvdyplnigGkPlfslpafipitFEltvLfaal.....atvlgllllnglp 119
                 a +l  y + v + ++i G+  + l+ fi+ t  + +++ a+     + +lgl++l++++
  CCD24837.1 423 AGSLPGYWASV-FTIDIVGRKPIQLMGFIILTILFCIIGFAYnkisdGGLLGLYILCQFF 481
                 44444444444.699999999999*****9998888887776333333456666666665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00033
                 HHHHHHHHHHH.IIIIISS---STT--SS-HHHHHHHHTHHHHHHHHHHHHH CS
     DUF3341  60 lGlalalllqv.ytsvvdyplnigGkPlfslpafipitFEltvLfaalatvl 110
                  G + a++ q+ + s++d      GkP + + + ++ +F l++L++ ++t+l
  CCD24837.1 513 SGKIGAIIAQTaLGSLIDHNCARDGKPKNCWLPHVMQIFALFMLLGIFLTLL 564
                 44444444444055688999*************************9999876 PP

>> FAM178  Family of unknown function, FAM178
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00012      0.43     176     236 ..     528     585 ..     513     609 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00012
      FAM178 176 LldlsldalveesdekvkvWiPslqdvtevflnlGaslkaLfpleslqp.sfneedllsevq 236
                 L+d      + ++ +  ++W+P + ++ + f+ lG+ l+ L+p ++    +  +e+ ++ev+
  CCD24837.1 528 LIDHN----CARDGKPKNCWLPHVMQIFALFMLLGIFLTLLIPETKRMTlEEINEKYHQEVD 585
                 44333....445677799************************97654330222222233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       905  (0.0504769); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.39
# Mc/sec: 4774.03
//
Query:       CCD24838.1  [L=302]
Description: hypothetical protein NDAI_0E00220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-94  315.3   4.9    2.4e-94  315.1   4.9    1.1  1  Gtr1_RagA      Gtr1/RagA G protein conserved region
      2e-09   37.3   0.7    5.1e-09   35.9   0.2    1.9  2  Ras            Ras family
    9.6e-09   35.5   0.0    2.8e-08   34.0   0.0    1.8  1  Roc            Ras of Complex, Roc, domain of DAPkinase
    1.3e-07   31.7   0.0    2.8e-07   30.6   0.0    1.6  1  MMR_HSR1       50S ribosome-binding GTPase
    1.3e-07   31.2   0.2    2.2e-07   30.5   0.2    1.3  1  Arf            ADP-ribosylation factor family
  ------ inclusion threshold ------
      0.025   14.5   1.0       0.74    9.7   0.1    2.5  2  RsgA_GTPase    RsgA GTPase
      0.027   15.1   0.1      0.055   14.1   0.1    1.5  1  MEA1           Male enhanced antigen 1 (MEA1)
       0.17   11.5   3.2       0.15   11.8   0.4    2.2  2  Guanylate_kin  Guanylate kinase
        1.6    9.4  20.1       0.62   10.6   8.8    2.5  2  Secretin_N_2   Secretin N-terminal domain
        3.2    8.3   8.8        8.3    6.9   8.8    2.1  1  ABC_tran       ABC transporter


Domain annotation for each model (and alignments):
>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.1   4.9   1.3e-97   2.4e-94       1     232 []      30     286 ..      30     286 .. 0.97

  Alignments for each domain:
  == domain 1  score: 315.1 bits;  conditional E-value: 1.3e-97
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletlk 99 
                 k+LLmG+sgsGK+smrsiiF+ny+a dt+rlgatidve+s++rflgn+tlnlwDcgGq+ f+e+y+ +qk++if++v+vli+VfDves+++ +d+e ++
  CCD24838.1  30 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFGKQKDHIFQMVQVLIHVFDVESQDVLKDIEIFQ 128
                 89************************************************************************************************* PP

   Gtr1_RagA 100 eilealrqyspeakvfvlihKmDliqedereeifeerkeeireeieklekeeiqffaTSiwdeslykAfssivqklipnldvleelLkklaeaieaeev 198
                 ++l++l++ysp+ak+fvl+hKmDl+q d+r+++f+ ++e+++e++ +++++++  f TSiwdeslykA+s+iv++lipn+++++++Lk+l ++++a e+
  CCD24838.1 129 KALKQLKKYSPDAKIFVLLHKMDLVQLDKRNDLFQIMMEKLNETSISYGFNNVIGFPTSIWDESLYKAWSQIVCSLIPNMSIYQNNLKNLQKILNAYEI 227
                 *************************************************************************************************** PP

   Gtr1_RagA 199 lLferstflviatvsskeaeekdas.........................rfekvseii 232
                 +Lfer+tflvi+++++++++++  +                         rfek+s+i+
  CCD24838.1 228 ILFERTTFLVISSSNNNNNNNNILGnstnnnnnnnsnndnsnnsilldpkRFEKISNIM 286
                 ***************77776554449999****************************96 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.2   2.9e-12   5.1e-09       1     118 [.      30     154 ..      30     181 .. 0.75
   2 ?   -1.8   0.0       1.1     2e+03      84     105 ..     276     296 ..     273     300 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 2.9e-12
                 EEEEEESTTSSHHHHHHH.HHH.SSCSSSC.TTTSSEEEEEEEEEETTEEEEEEEEEETTSGGG.....HHHHHHHHTTESEEEEEEETTBHHHHHTHH CS
         Ras   1 KlvlvGdsavGKtslllr.fvk.dkFkeey.esTigvdfytkeievdgkevkleiwDTAGqeef.....kslrelyyrdaegillvyditsresfenvk 91 
                 Kl+l+G s+ GK+s+    f + + F+++   +Ti  d   +++++ g +++l++wD  Gq+ f      + ++  ++ +++++ v+d++s++ +++++
  CCD24838.1  30 KLLLMGRSGSGKSSMRSIiFSNySAFDTRRlGATI--DVEHSHLRFLG-NMTLNLWDCGGQDVFmenyfGKQKDHIFQMVQVLIHVFDVESQDVLKDIE 125
                 89************965414432568766514666..65556666555.689*********875211115678999**********************9 PP

                 HHHHHHHHHST..TTSEEEEEEETTTGGG CS
         Ras  92 kwveeikrvae..envpivLvGnKvDlee 118
                  + + +k+ ++   + +i ++  K+Dl +
  CCD24838.1 126 IFQKALKQLKKysPDAKIFVLLHKMDLVQ 154
                 8888887777766579999999****987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.1
                 HHHHHTHHHHHHHHHHHSTTTS CS
         Ras  84 resfenvkkwveeikrvaeenv 105
                  + fe+++++++++k+ +++ +
  CCD24838.1 276 PKRFEKISNIMKNFKQSCTK-L 296
                 5679999****999999984.4 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.6e-11   2.8e-08       1     119 [.      30     151 ..      30     152 .. 0.74

  Alignments for each domain:
  == domain 1  score: 34.0 bits;  conditional E-value: 1.6e-11
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTT.....T-HHHHCTSCEEEEEEEGHHH.. CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrs.....lhplylreaalailvydsrss.. 92 
                 K++l+G sg+GK+s+ + +  +++s   +  +g+++  ++  +++ +       +++ln+WD +Gq+ f +      +++ ++  +++i v+d +s+  
  CCD24838.1  30 KLLLMGRSGSGKSSMRSIIF-SNYSAFDTRRLGATIDVEHS-HLRFL------GNMTLNLWDCGGQDVFMEnyfgkQKDHIFQMVQVLIHVFDVESQdv 120
                 89************866555.77777778888888866543.44443......4689*********988642222267788888889999999554413 PP

                 ....HCHHHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  93 ....enlkeWlkelkkvagkspvilvgnkiD 119
                     e +++ lk+lkk++++++++++  k+D
  CCD24838.1 121 lkdiEIFQKALKQLKKYSPDAKIFVLLHKMD 151
                 3222456899*******************99 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.6e-10   2.8e-07       2     103 ..      31     133 ..      30     150 .. 0.67

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.6e-10
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEE.ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT....TTCSHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvk.lkgkeielvDtpGliegaseekglgkaflalee.adlillvvdas....eeklkpl 93 
                  +++Gr+ +GKS++ + ++ +  a  +++ g+T+d+++ +++ l++  ++l+D+ G  +    e+ +gk+   + + ++++++v+d++         ++
  CCD24838.1  31 LLLMGRSGSGKSSMRSIIFSNySAFDTRRLGATIDVEHSHLRfLGNMTLNLWDCGG-QD-VFMENYFGKQKDHIFQmVQVLIHVFDVEsqdvL----KD 123
                 5799**************999778889***************54559*********.32.2234445555555555479*******7743331....22 PP

                 HHHHHHHHHH CS
    MMR_HSR1  94 deeleellee 103
                  e +++ l++
  CCD24838.1 124 IEIFQKALKQ 133
                 2222222222 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.2   1.2e-10   2.2e-07      11     140 ..      25     165 ..      16     201 .. 0.79

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.2e-10
                 .TTEEEEEEEESTTSSHHH....HHHHHHHSSCEECSSSSSEEEEEEEE.TTEEEEEEEE-SSGGGGGGG.....GGGCTTESEEEEEEETT-CTTHHH CS
         Arf  11 kkkelrilllGLDnaGKtT....ilkklkleelvttvPTigfnveelei.knlkftvwDvGGqeklRplW.....knYfektdavifvvDsadreRlee 99 
                  ++  ++ll+G  ++GK+     i  +++  ++ +   Ti  +  +l++  n+++++wD GGq+   + +     ++ f+ ++++i+v D+  ++ l++
  CCD24838.1  25 PNNRKKLLLMGRSGSGKSSmrsiIFSNYSAFDTRRLGATIDVEHSHLRFlGNMTLNLWDCGGQDVFMENYfgkqkDHIFQMVQVLIHVFDVESQDVLKD 123
                 467789***********863333778899999999999**99999999769************986543324333789*************99998888 PP

                 HHHHHHHHCTSGCCT.TSEEEEEEE-TTSTTSS-HHHHHHHT CS
         Arf 100 akeeLkalleeeelk.evallvlaNKqDlpealseeelrell 140
                  +   kal + ++ + ++++ vl  K+Dl +  ++++l +++
  CCD24838.1 124 IEIFQKALKQLKKYSpDAKIFVLLHKMDLVQLDKRNDLFQIM 165
                 77666666666666559************9988888776544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00041      0.74      99     121 ..      28      50 ..       5      64 .. 0.78
   2 ?    2.9   0.1     0.052        93      36      75 ..     128     169 ..     102     183 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00041
                  TSEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallp 121
                   k  +l+G SG GKS++   + +
   CCD24838.1  28 RKKLLLMGRSGSGKSSMRSIIFS 50 
                  37789***********9776665 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.052
                  HHHHHHHHHT..T-EEEEEEE-GGG--HHHHHHHHHHHHHHT CS
  RsgA_GTPase  36 drfLvlaeek..giepvivlnKiDlleeeeeleelkeeleal 75 
                  +++L ++++   ++++ ++l K+Dl++ +++ + ++  +e+l
   CCD24838.1 128 QKALKQLKKYspDAKIFVLLHKMDLVQLDKRNDLFQIMMEKL 169
                  555555544311679999********9988444444444444 PP

>> MEA1  Male enhanced antigen 1 (MEA1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1     3e-05     0.055      58      96 ..     252     290 ..     217     291 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-05
        MEA1  58 eeeesevrevwsaprssessIpldaekveevkstMakvk 96 
                  ++++++++ +s+  +s++sI ld+++ e++ ++M ++k
  CCD24838.1 252 GNSTNNNNNNNSNNDNSNNSILLDPKRFEKISNIMKNFK 290
                 33333333444444899*******************997 PP

>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.4   8.1e-05      0.15       2     128 ..      28     153 ..      27     200 .. 0.77
   2 ?   -2.3   0.1       1.7     3e+03     120     147 ..     236     263 ..     212     291 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.1e-05
                    SSEEEEESTTTSSHHHHHHHHHHHSTTTEEE--EEESS---TTS-TTTSEEE--HH..HHHHHHHTTTEEE..EEEETTEEEEEEHHHHHHHHHTT CS
  Guanylate_kin   2 rrpvvlvgpsgaGksslkkaLlselpekfgvsvshtTrdprkgevdGkdYyFvske..emekdiskneflE..aaefsgnlygtsveaieevlekg 93 
                    r+ + l+g sg Gkss+++ ++s+++  +      t r     +v+  +  F+ +   ++  +  ++ f+E  +++ +++++  ++  i+    + 
     CCD24838.1  28 RKKLLLMGRSGSGKSSMRSIIFSNYSAFD------TRRLGATIDVEHSHLRFLGNMtlNLWDCGGQDVFMEnyFGKQKDHIFQMVQVLIHVFDVES 117
                    68899*****************9987665......4455555677778999996651156689999*****65599999***99999999999999 PP

                    SEEEEE--..CHHHHHHHHTTTTEEEEEEEESSHHHH CS
  Guanylate_kin  94 kiviLDvd..iqavkqlrkaelspiivFikppslkel 128
                    ++v+ D++   +a+kql+k ++ +  +F+  +  + +
     CCD24838.1 118 QDVLKDIEifQKALKQLKKYSPDAK-IFVLLHKMDLV 153
                    99******7556899**99999875.56655444443 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.7
                    EEESSHHHHHHHHTTSSSSHHHHHHHHH CS
  Guanylate_kin 120 ikppslkelqrrlksrgkeqeeklakrl 147
                    + ++s ++ +++++  g++++++ ++++
     CCD24838.1 236 LVISSSNNNNNNNNILGNSTNNNNNNNS 263
                    4444444444444444444444444433 PP

>> Secretin_N_2  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   3.5     0.039        69      24      49 ..       8      23 ..       2      68 .. 0.54
   2 ?   10.6   8.8   0.00035      0.62      27      57 ..     239     270 ..     228     301 .. 0.54

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.039
  Secretin_N_2 24 Gsvsssgsssssssssssssgsssss 49
                        ++s+s+s+++      s+++
    CCD24838.1  8 R-----NNSNSNSNNAI-----SNNN 23
                  1.....11111111111.....1111 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00035
  Secretin_N_2  27 sssgssssssssssss.sgsssssssssnsss 57 
                   sss++++++++  ++s +++++++s+++ns++
    CCD24838.1 239 SSSNNNNNNNNILGNStNNNNNNNSNNDNSNN 270
                   33333333333333333333333333333332 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   8.8    0.0047       8.3      11      37 ..      28      54 ..      23     297 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0047
                TSEEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 11 gekvaivGenGaGKStLlkllagllkp 37
                 +k+ ++G++G+GKS++ +++  +++ 
  CCD24838.1 28 RKKLLLMGRSGSGKSSMRSIIFSNYSA 54
                57899****************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1608  (0.0896871); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.36
# Mc/sec: 2536.40
//
Query:       CCD24839.1  [L=589]
Description: hypothetical protein NDAI_0E00230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.1e-49  166.6   0.0      1e-48  166.1   0.0    1.2  1  Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
    7.4e-13   48.9   0.1    5.7e-11   42.8   0.1    3.1  2  Pyr_redox    Pyridine nucleotide-disulphide oxidoreductase
     0.0057   16.0   7.1       0.47    9.7   0.1    3.7  4  Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.1   0.0   1.7e-52     1e-48       2     294 .]     116     476 ..     115     476 .. 0.89

  Alignments for each domain:
  == domain 1  score: 166.1 bits;  conditional E-value: 1.7e-52
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.......HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias.......evvkklnqgielllgeevvkidpgkkkvklekkke 92 
                   vv++G+G++++a+ +++ ++ ++v+++ + ++ +++++ll+++ +g+ ++++i++       +     + +++++ + ++++i p++ +v+++ +++
   CCD24839.1 116 TVVILGSGWGAIAFLKHIDTKRYNVAII-SPRNYFLFTPLLPSTPVGTVDEKSIIEpvvnfalK----KKGNVTYYEA-TATEINPDRNTVTINSLSN 207
                  69**************************.999999999******************99976551....3455776666.8888888888888877777 PP

                  .............................TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..................S CS
                  .............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................x RF
  Pyr_redox_2  93 .............................gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..................k 143
                                               +d  +i+yd+l+ A G++p+++gipGv++++ +l +++ +  ++++k                      
   CCD24839.1 208 vsklnhhpsqssanantntktnndtmltqDDCAEIKYDYLISAVGAEPNTFGIPGVEKHGLFL-KEIPNSLQIRQKFASnlekanllppgdperkrlL 304
                  888888888888888888888888888889999***********************8888888.************999999***********98888 PP

                  EEEEES-SHHHHHHHHHHHHHT-..............EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCE.. CS
                  xxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Pyr_redox_2 144 rivvvGgGyiGvElAaalaklgk..............evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgee.. 225
                  +ivvvGgG++GvE+A++l ++ +              +++lvea++++l++++k+ls +++e lek  ++++l+t v ++++++  ++++ +dg++  
   CCD24839.1 305 SIVVVGGGPTGVETAGELQDYVHqdlqkflpsvakevQIHLVEALPIVLNMFEKKLSSYAQETLEKTSIKLHLKTAVAKVEKDHLIAKTKSDDGKTvi 402
                  88****************88877788889999999999*******************************************9997444999999999* PP

                  ...EEESEEEE-S-EEES-HHCS..HCCT-EEEETTEEE--TTSBES.STTEEE-GGGCTECCSS--HHHHHHHH CS
                  ...xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 226 ...idadlvvvavGvrpstelle..eklglelderggivvdeflrtn.vpgiyaiGDvaggkggpelaqaAvqqG 294
                     i++ ++++a+G ++++   +   k+  + ++++++ v+++l++    +i+aiGD a   g p +aq+A+qq+
   CCD24839.1 403 eekIPYGTLIWATGNKARPIVTNlfPKITEQNKSTRALSVNKYLQVIgSNNIFAIGDNA-FIGLPPTAQVAHQQA 476
                  *****************998877754444444588889*******977*********99.889**********98 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.039   2.3e+02       2      38 ..     117     155 ..     116     204 .. 0.82
   2 !   42.8   0.1   9.5e-15   5.7e-11       1      69 [.     305     387 ..     305     397 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.039
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS..TTS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll..rll 38 
                 vv++G+G+ ++ + + +   + +V ++  ++ +l  +ll
  CCD24839.1 117 VVILGSGWGAIAFLKHIDTKRYNVAIISPRNYFLftPLL 155
                 899999999999999999999999999999988865555 PP

  == domain 2  score: 42.8 bits;  conditional E-value: 9.5e-15
                 EEEEECSSHHHHHHHHHH.......HHTT.........SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgal.......aelg.........kkVtvversdkllrllDeeaskilqeklekngievllntkveeiegs 69 
                 ++vvvGgG +g+E Ag+l          +          ++++ve+ + +l+++++++s++ qe lek  i+++l+t v+++e++
  CCD24839.1 305 SIVVVGGGPTGVETAGELqdyvhqdL--QkflpsvakeVQIHLVEALPIVLNMFEKKLSSYAQETLEKTSIKLHLKTAVAKVEKD 387
                 69****************66666550..1555555544888******************************************87 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3      0.62   3.7e+03     234     234 ..      57      57 ..       6     112 .. 0.55
   2 ?    1.8   0.1     0.019   1.1e+02     108     151 ..     226     268 ..     150     282 .. 0.74
   3 !    6.5   0.0   0.00072       4.3       1      19 [.     307     325 ..     307     332 .. 0.88
   4 !    9.7   0.1   7.9e-05      0.47      81     143 ..     358     426 ..     338     458 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.62
  Pyr_redox_3 234 e 234
                  +
   CCD24839.1  57 T 57 
                  2 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.019
  Pyr_redox_3 108 kkedegfevetsk.etyeAkkviiAtGefdkPnklnipGeeklvk 151
                  +k+++   ++++  ++++ +++i A G    Pn+ +ipG ek+  
   CCD24839.1 226 TKTNNDTMLTQDDcAEIKYDYLISAVGA--EPNTFGIPGVEKHGL 268
                  4544444444444258888999999998..999999999986554 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.00072
  Pyr_redox_3   1 iIiGaGPaGlaaaielkka 19 
                  +++G+GP G+++a el++ 
   CCD24839.1 307 VVVGGGPTGVETAGELQDY 325
                  79*************9975 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 7.9e-05
  Pyr_redox_3  81 kealeYlrevaksfelpiklfeeVesvkkedegfevetske......tyeAkkviiAtGefdkPnklni 143
                  k++ +Y +e  ++  ++ +l++ V +v+k++   + +++ +      ++   ++i+AtG   +P ++n 
   CCD24839.1 358 KKLSSYAQETLEKTSIKLHLKTAVAKVEKDHLIAKTKSDDGktvieeKIPYGTLIWATGNKARPIVTNL 426
                  567788888888888888888888888887766666666553322223334468888888777766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1295  (0.0722293); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 4259.10
//
Query:       CCD24840.1  [L=519]
Description: hypothetical protein NDAI_0E00240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        3.9    6.8   8.0       0.41   10.0   1.7    2.3  2  RtcR           Regulator of RNA terminal phosphate cyclase


Domain annotation for each model (and alignments):
>> RtcR  Regulator of RNA terminal phosphate cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.6     0.034   6.1e+02      93     152 ..      38     102 ..      28     134 .. 0.64
   2 ?   10.0   1.7   2.3e-05      0.41      77     180 ..     176     276 ..     148     279 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.034
        RtcR  93 dfakaykfdtekedYlvhittGth..vaqiclfLltea...rylParllqtsPpkkeeeeaagky 152
                 + a+ay+ +  ++dY  ++ t +   ++q   f +  a   +y P + ++ +P  ++++++ +++
  CCD24840.1  38 NTARAYNHNAYSNDYNYELQTDSVpiIQQQQQFTVNHAndyKYSPQKSMKNNPYLNQRHQSISDH 102
                 56888999999999999998876333666666766554333799999999999955555554443 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 2.3e-05
        RtcR  77 elkdpWdfeevyaalldfakaykfdtekedYlvhittGthvaqicl.fLltearylParllqtsPpkkeeeeaagkyeiiDldLsrydkiaerfekeqk 174
                 +++++ ++++vy+   +  ++y+ ++++++   + tt  h  qi+     t a+y Pa++  tsP+k+ + ++  + + i l  s y k++ + +  ++
  CCD24840.1 176 NINNSNNINHVYQYTKQ--NHYQNNNNNNNNNNNNTTQYH--QISSpQRQTTANYSPAKFQRTSPTKQYHYQEVKSESDILLTNSSYSKLNIKNRYFTE 270
                 56666666777654433..344555555555555565555..8876256799**************777766666666667888999986654444444 PP

        RtcR 175 eavsfL 180
                 ++ +++
  CCD24840.1 271 NKEQLI 276
                 444455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3112  (0.173574); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 3516.48
//
Query:       CCD24841.1  [L=93]
Description: hypothetical protein NDAI_0E00250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.9e-12   44.9   0.5    1.4e-11   44.1   0.5    1.4  1  Ribosomal_L30  Ribosomal protein L30p/L7e


Domain annotation for each model (and alignments):
>> Ribosomal_L30  Ribosomal protein L30p/L7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.5   7.7e-16   1.4e-11       1      51 []       4      54 ..       4      54 .. 0.98

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 7.7e-16
                   EEEEE-S-STTS-HHHHHHHHHTT-SSTTEEEE--SSHHHHHHHHHCCCGE CS
  Ribosomal_L30  1 lfVtrirsiigvppkvrktLqlLgLrkingtvvklntpsirGmLkkVkhlV 51
                   +++t+ rs+ig+p+ +r ++++ gL k+++ v++  tp+++G L kVk+l+
     CCD24841.1  4 YKITLQRSLIGLPKQTRTIVKTIGLGKRGSIVYRRVTPAMAGSLAKVKELI 54
                   69***********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 728.09
//
Query:       CCD24842.1  [L=498]
Description: hypothetical protein NDAI_0E00260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-16   60.7   0.0    2.2e-16   60.1   0.0    1.3  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
        2.7    6.4   9.6        0.9    8.0   1.1    2.1  2  LRIF1          Ligand-dependent nuclear receptor-interacting 


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   2.4e-20   2.2e-16       1     204 [.      94     433 ..      94     487 .. 0.86

  Alignments for each domain:
  == domain 1  score: 60.1 bits;  conditional E-value: 2.4e-20
                    EEEEESTG..........CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH...TTCEEEEECCHECSSSTTSSEEEEEECSTE CS
                    xxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos   1 ltwNvngq..........aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal...ggflgasstsptgggggggnggavlsrfpl 83 
                    +t+N++ q          +  al+++rrs+ l+++l+ yd D+l LQE+d  +    +   ++   + + ++         +g+ +g+ +++++ l
     CCD24842.1  94 MTYNCLAQsliqrdlfpgSGQALKWVRRSKVLLNELKYYDSDLLSLQEIDFVQFKQYWKIVLAklgYDCEFYKK-------NGKIHGVLIAWKRNL 182
                    8***********************************************99999999999998896655555544.......6************** PP

                    EEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEE.............................. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................. RF
  Exo_endo_phos  84 tslfrrtfiefndlvaalrreplaakleqlniashrdhdlvrdlqllalllqvealnadrgapviv.............................. 149
                    ++++   +i+f+     ++  ++ +k++ l+               +al   +++++a +++ vi+                              
     CCD24842.1 183 FAKVKSLPIDFDETLSGTIKPRTRTKNVGLV---------------IALEFLNKDKSAIKKKGVIIgtthlfwhlfgtfertrqcyvmmdqmdkfm 263
                    ****************************999...............78888888888888888888999999999999999999999999999999 PP

                    .............EEE-SSSTSGGGBSCGHHHHHHCTTTH........................................................ CS
                    .............xxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................ RF
  Exo_endo_phos 150 .............aGDfNarpsdddsrvlrtrglalapap........................................................ 176
                                 +GDfN+ p d ++ ++++ + +   +                                                         
     CCD24842.1 264 kklggiekwypffTGDFNSQPKDAPYVSITSKPVSFQNETkiviecsaaykyskkrngeeeeknegkekqheidssdssdaetdeekeeiipnqps 359
                    9999999999999*******************9999999999999999999999999999999998888888888888888888777777777777 PP

                    ..................H............................SSCESCETTTTTTTTTTTEB-BEEEEE CS
                    ..................x............................xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 177 ..................v............................glyllgggptptyvtraggsrlDrila 204
                                                                     ++++g+p+ + ++r + + lD+i++
     CCD24842.1 360 narplhftptreqaelvsQlaalhnslnlraislysvgyrkvdpenaYINNDRGEPELSEWARMWSGLLDYIFF 433
                    7666666666666665550555556666667777778888999999**************************87 PP

>> LRIF1  Ligand-dependent nuclear receptor-interacting factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.1    0.0001       0.9     485     552 ..       5      71 ..       1      85 [. 0.81
   2 ?    3.0   1.8    0.0032        29     583     647 ..     292     357 ..     279     378 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0001
       LRIF1 485 svdaatvllgktsqecvfsdqepkvqsekasslekeaqirsqekslqkqdaelrkkFGltkdlrVyLt 552
                 s+++ +    +t+q+ + + +++ +++ ++  +e  ++ir ++++ ++ + e r k G+  d+   L+
  CCD24842.1   5 SANDNAE-PHQTQQNNQKKRNQKMNKKRMMLNTEYITKIRAEREKKRELEREYRMKHGFEPDIPSELQ 71 
                 4444444.4678888888888888899999999*************************9998876665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.0032
       LRIF1 583 vvvkltkeieeekkkikl..eqdlskKRkaktsklvdsaKrrktsnksstssnsetsspssqllsss 647
                 +++k  + ++e k+ i+     + skKR+ +  +  +++K ++ +++ss ss+ et+  + ++++ +
  CCD24842.1 292 ITSKPVSFQNETKIVIECsaAYKYSKKRNGE-EEEKNEGKEKQHEIDSSDSSDAETDEEKEEIIPNQ 357
                 55555555556665554411457899**999.6777899**************99998887776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1789  (0.0997825); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 3369.73
//
Query:       CCD24843.1  [L=1198]
Description: hypothetical protein NDAI_0E00270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.7e-86  288.9  47.2    3.6e-65  220.5  18.7    4.0  4  Nab6_mRNP_bdg  RNA-recognition motif
    6.1e-18   64.3   9.4    2.8e-17   62.2   9.4    2.2  1  RRM            Putative RRM domain
    1.4e-05   24.9   0.1      0.012   15.4   0.0    3.2  3  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN


Domain annotation for each model (and alignments):
>> Nab6_mRNP_bdg  RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.5  18.7     6e-69   3.6e-65       1     183 [.     187     398 ..     187     407 .. 0.89
   2 !   82.7   6.9   5.6e-27   3.3e-23     179     317 .]     431     583 ..     423     583 .. 0.71
   3 ?    1.7   0.1     0.024   1.4e+02     188     228 ..     875     915 ..     867     969 .. 0.73
   4 ?   -4.1   1.8       1.4   8.5e+03     246     277 ..    1033    1070 ..    1002    1098 .. 0.47

  Alignments for each domain:
  == domain 1  score: 220.5 bits;  conditional E-value: 6e-69
  Nab6_mRNP_bdg   1 isYkiLPkGdDtYrtRSLLfeNvnesidlhsfvkkfvkynpvESvYlikdedtd.......dkskksillSFlsreicLdfYNnvLqrlaefKtkl 89 
                    isYk+LP+GdD+YrtRSLLf Nv +sidlhsf+  fv+y+++ES+Yli ++d +       dk+k+sillSFlsreicL fYNnvLqrl+efKt+l
     CCD24843.1 187 ISYKLLPTGDDAYRTRSLLFSNVASSIDLHSFIYDFVQYSSIESIYLISNTDDEkdqdnenDKNKRSILLSFLSREICLSFYNNVLQRLNEFKTNL 282
                    79***********************************************9997788999999999******************************* PP

  Nab6_mRNP_bdg  90 ksesLklsFVslkykkesedeeedk.....................kdaaevlveaslkydivnrgAtRSlaiefkdevekdelldkkLefL.kee 163
                    +s+sL+l+FV l+y ++++d  +++                     +  ++++++++lk+d++n +AtR ++ie+k++++k++ll+k+L fL +++
     CCD24843.1 283 QSKSLTLNFVILNYLEKTDDGSTANisnnqlnqiqenendvntnefDYRNSMNTVNALKFDLINPDATRFIMIELKTKCDKETLLNKHLSFLiDNK 378
                    **************8555555554456666666666666667777677889999*************************************94677 PP

  Nab6_mRNP_bdg 164 nnkrYvlesidlvntdekek 183
                    +n rY+lesidl+n  e+e+
     CCD24843.1 379 KNIRYILESIDLFNIIENEN 398
                    89**********99877766 PP

  == domain 2  score: 82.7 bits;  conditional E-value: 5.6e-27
  Nab6_mRNP_bdg 179 dekekeFpknYailtFlnismaievldylkkkskklkiskcffvsvakla....esssasslksisskgtksts..........sevsaeskenge 260
                    ++++++Fp++Ya+l+F+ni ma+e+ dylk +  k+ i++ ++v++++ +    +    ss++s  ++ t++++          +++ ++s+e ++
     CCD24843.1 431 NRSKRTFPNHYAVLSFINIYMAMELRDYLKLNGLKHGITNASYVQIKHVKkslnS----SSKRSSVTSTTDNKDksevdtnesvEGKDKKSEEAKS 522
                    667899******************************************9955552....3333333322222222222333333333333333337 PP

  Nab6_mRNP_bdg 261 ytsknaslvsless....vsldeeidslaekLksveleestlevdvsdYkePeieefddHl 317
                    +++k +s++ ++       + d +id + +kL++++l+e++  +d+++Y++P ++++d H+
     CCD24843.1 523 FNNKLSSITMSSPDttyeGEDDIDIDIIISKLQKLKLKETIQVLDIATYNTPLFQSHDSHM 583
                    777666654433333433455667899*********************************6 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.024
  Nab6_mRNP_bdg 188 nYailtFlnismaievldylkkkskklkiskcffvsvakla 228
                    + + ++F+ni+ ai +++ ++++ k+ ++sk f    + l+
     CCD24843.1 875 HCCWVNFMNITSAIKLVEDVNNNPKDNTFSKKFNHRYDGLI 915
                    678899*****************999999998765555555 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 1.4
  Nab6_mRNP_bdg  246 stssevsaeskeng......eytsknaslvslessvsl 277 
                     s+++e++ e+ e++       ++++ +s+ s++  + +
     CCD24843.1 1033 SHDDEQNDEKGEEQeevdviAHADDISSVNSSDVEIII 1070
                     22222222211111223323333333344444444332 PP

>> RRM  Putative RRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   9.4   4.7e-21   2.8e-17       1      44 [.      79     122 ..      79     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 4.7e-21
         RRM   1 lPnvPqTPFDlaYgasLLPShLLvgSPFissPnlpsqyappsla 44 
                 lPn+P+TPFD+aYga+LLPShLL+gSP++s+Pn   ++++++++
  CCD24843.1  79 LPNAPPTPFDTAYGATLLPSHLLMGSPYVSTPNGIVPSSQQQSQ 122
                 59******************************977666666654 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.84     5e+03      19      35 ..     222     237 ..     210     242 .. 0.82
   2 !    5.7   0.0    0.0022        13       1      52 [.     730     775 ..     730     781 .. 0.83
   3 !   15.4   0.0   2.1e-06     0.012      11      62 ..     851     897 ..     850     904 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.84
                 HHTTSCEEEEEEEEETT CS
       RRM_1  19 FskfGpiksiklvrdet 35 
                 F ++ +i+si l+++ t
  CCD24843.1 222 FVQYSSIESIYLISN-T 237
                 778999999999985.4 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0022
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedA 52 
                 +++gnL+p  + e++  + ++ G  +sikl+      sk+++fV+F   ++A
  CCD24843.1 730 IYIGNLNPRSKAEDVCNVVRG-GILQSIKLIA-----SKRICFVTFIEASAA 775
                 789999888888888888875.788999*999.....8********888777 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 2.1e-06
                 SHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTE CS
       RRM_1  11 teeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngk 62 
                 +e++L+  F+k+Gpi+ i+  +d       ++ V+F +  +A k +e +n+ 
  CCD24843.1 851 SEQQLRFDFNKYGPIEQINYLSD-----SHCCWVNFMNITSAIKLVEDVNNN 897
                 58999999***************.....*******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1665  (0.0928663); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.85u 0.23s 00:00:01.08 Elapsed: 00:00:00.42
# Mc/sec: 8471.14
//
Query:       CCD24844.1  [L=549]
Description: hypothetical protein NDAI_0E00280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-35  120.4  56.3    7.8e-33  113.8  56.3    2.4  1  MFS_1     Major Facilitator Superfamily
    0.00011   21.3   9.3    0.00011   21.3   9.3    4.0  3  Sugar_tr  Sugar (and other) transporter
     0.0094   16.2   2.0     0.0094   16.2   2.0    4.6  6  Ost5      Oligosaccharyltransferase subunit 5


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8  56.3   1.3e-36   7.8e-33      15     351 ..      96     483 ..      77     485 .. 0.87

  Alignments for each domain:
  == domain 1  score: 113.8 bits;  conditional E-value: 1.3e-36
       MFS_1  15 lgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa...sslwlllvlrvlqGlgagalfpagaali 110
                 +++++  ++++++ + +    +l++ + l+++ ++l+ Gr++d +G +++l+ g+l+f++++l+  f+   ++  +++++r++qGlg ++++p+++ ++
  CCD24844.1  96 TLSIMN-IITDSFKSEGGKETWLIASFPLVSGSFILISGRIGDIYGLKKTLIGGYLFFIIWSLISGFTdysHNDIFFIISRAFQGLGIAFILPNVMGIV 193
                 445555.78999999999999****************************************777778666688889*********************** PP

       MFS_1 111 adwfpk..eergraigllsagfslGailgpllggllasslg..Wravfyilaivsllafvlfllllpeepperkrkspkeee................. 188
                   ++++  ++++ +i++++a++ +Ga +g l++gl+ +     W+++fy++ai+s++   l++  +  ++  + +  +                     
  CCD24844.1 194 GNIYKPdtQRKNIVISMIGASAPIGAFMGSLFAGLIGTENPkqWPWAFYAFAIASAIN--LAISIYSIPNNIPTNIHGFAMDwigsimaviglillnfv 290
                 ******655888999**********************55446****************..55688888888888887777778**************** PP

       MFS_1 189 ................................kgtgpaplvpawkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallal 255
                                                  + +++p++p   ++ k++++ ++l+al+l++  f +++++ +++l   +++s +l ag+++ ++a+
  CCD24844.1 291 wnqgpivgwqkayiivlliisiialvlfftyeIKYAKSPILP--VEVTKNRHIIMILAALFLGWGSFGIFSFYYFSFLLNLRHYS-ALWAGTTYFMFAI 386
                 *99999999999999999998888888888866666666666..6666666666899999999999999****************.8************ PP

       MFS_1 256 vgailallagrlsdrlgrrrrlllallllllaalglallavtssavllll.vlvliGfglgfvfpsllalasdlappeeagtasglfntagslggal 351
                  g ++a+++g++++r+++  +l+++++++ +++++l +++v ++++ + l  +++++fg+ + fp+++ ++sd +  +++g+a +l+nt+ + +++l
  CCD24844.1 387 WGTVAAVIVGAFIKRISASVILFFSMIAFNIGLIMLSVTPVDQTYFRMNLgTMIILSFGMDMSFPAAAIILSDGLTMQYQGMAGSLANTMVNYSMSL 483
                 ******************************************7776666659999*********************************999988776 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   9.3   1.8e-08   0.00011      49     189 ..     115     257 ..      88     261 .. 0.80
   2 ?   -4.1   4.9       0.9   5.4e+03      49      95 ..     273     319 ..     242     357 .. 0.73
   3 ?   -8.6  20.1         3   1.8e+04      43     171 ..     359     507 ..     302     526 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.8e-08
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS.-SCCH.HHHHHHHHH CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiA.pkklR.galvslyql 145
                 +++ ++f +++    l++g +gd++G kk+l+ + ++f+i ++++++++   +   +i++R + G+g+ ++   v   ++ i  p++ R  +++s+   
  CCD24844.1 115 TWLIASFPLVSGSFILISGRIGDIYGLKKTLIGGYLFFIIWSLISGFTDYSHNDIFFIISRAFQGLGIAFILPNVMGIVGNIYkPDTQRkNIVISMIGA 213
                 455555555555556899*******************************77888888999**********999888888887658899955778999** PP

                 HHHHHHHHHHHHHHHHHTSS-TTHHHHHHH.CCHHHHHHHHHHGG CS
    Sugar_tr 146 aitfGilvaaifglglnktsnadgwrillg.lqlvpallllilll 189
                 +  +G ++++ f   + + +  ++w++ ++ +++++a+ l+i ++
  CCD24844.1 214 SAPIGAFMGSLFAGLIGTENP-KQWPWAFYaFAIASAINLAISIY 257
                 **********99888877777.9****986155555555555555 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 0.9
                 HHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH- CS
    Sugar_tr  49 glivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaa 95 
                  +i si+ v+++i   f+   g ++G +k+++i+ ++ +i a++ ++
  CCD24844.1 273 DWIGSIMAVIGLILLNFVWNQGPIVGWQKAYIIVLLIISIIALVLFF 319
                 45556666666666666666666677777777766665555555444 PP

  == domain 3  score: -8.6 bits;  conditional E-value: 3
                 H................HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGG.HHHHHHHHHHHHHHHHHHH CS
    Sugar_tr  43 e.............ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivg.RvlvGigvGlasvlvPmyi 127
                 +             s+++ g +  +f + +++ ++++g +++r++   +l ++ + f ig ++  +++ ++++  + +g  +++ +g+ +    + + +
  CCD24844.1 359 SfyyfsfllnlrhySALWAGTTYFMFAIWGTVAAVIVGAFIKRISASVILFFSMIAFNIGLIMLSVTPVDQTYFRMNLGtMIILSFGMDMSFPAAAIIL 457
                 0444444444444467899999999999********************************999999998855554444438889999999999999999 PP

                 HTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-.....TTHHH CS
    Sugar_tr 128 sEiApkklRgalvslyqlaitfGilvaaifglgl.nktsn.....adgwr 171
                 s   + ++ g+ +sl ++++   + +  ++g+ +  ++++      +g+r
  CCD24844.1 458 SDGLTMQYQGMAGSLANTMVNYSMSLCLGMGTTVeRQINKsgkeiLKGYR 507
                 99999999999999998888776666555555554344433445545555 PP

>> Ost5  Oligosaccharyltransferase subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1         1   6.1e+03      53      62 ..     173     182 ..     145     189 .. 0.50
   2 ?   -0.1   1.1      0.19   1.1e+03      47      59 ..     215     227 ..     174     232 .. 0.65
   3 !   16.2   2.0   1.6e-06    0.0094      11      63 ..     299     355 ..     296     363 .. 0.82
   4 ?   -3.1   1.7       1.6   9.6e+03      13      29 ..     382     398 ..     371     424 .. 0.55
   5 ?   -2.1   0.5      0.79   4.8e+03       8      30 ..     403     425 ..     397     444 .. 0.62
   6 ?   -3.7   0.0       2.6   1.6e+04      55      62 ..     482     489 ..     475     490 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1
        Ost5  53 vASlflGfGv 62 
                 ++ +f G+G+
  CCD24844.1 173 ISRAFQGLGI 182
                 3334445554 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.19
        Ost5  47 elllalvASlflG 59 
                  ++ a+++Slf+G
  CCD24844.1 215 APIGAFMGSLFAG 227
                 4566777777777 PP

  == domain 3  score: 16.2 bits;  conditional E-value: 1.6e-06
        Ost5  11 lqptlafvllligllltalfflyevtstkkkrs....lvkelllalvASlflGfGvv 63 
                 +q  + +vll+i+++ + lff+ye++  k+         +  ++ ++A+lflG G++
  CCD24844.1 299 WQKAYIIVLLIISIIALVLFFTYEIKYAKSPILpvevTKNRHIIMILAALFLGWGSF 355
                 5677889******************976665444455778889***********986 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 1.6
        Ost5  13 ptlafvllligllltal 29 
                 +++a+  +++++++ a+
  CCD24844.1 382 FMFAIWGTVAAVIVGAF 398
                 44444444444444333 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 0.79
        Ost5   8 ppslqptlafvllligllltalf 30 
                 + s+  ++++++  igl+++++ 
  CCD24844.1 403 SASVILFFSMIAFNIGLIMLSVT 425
                 55555666666666666666654 PP

  == domain 6  score: -3.7 bits;  conditional E-value: 2.6
        Ost5  55 SlflGfGv 62 
                 Sl+lG+G+
  CCD24844.1 482 SLCLGMGT 489
                 89999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1290  (0.0719505); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 3773.17
//
Query:       CCD24845.1  [L=522]
Description: hypothetical protein NDAI_0E00290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-119  398.2   0.0   2.3e-119  397.7   0.0    1.3  1  Anp1      Anp1
  ------ inclusion threshold ------
      0.048   14.0   0.0       0.25   11.7   0.0    2.1  2  Comm      Commissureless
       0.13   11.5   0.0       0.19   10.9   0.0    1.1  1  DUF2232   Predicted membrane protein (DUF2232)


Domain annotation for each model (and alignments):
>> Anp1  Anp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.7   0.0  3.8e-123  2.3e-119       2     264 .]     157     468 ..     156     468 .. 0.99

  Alignments for each domain:
  == domain 1  score: 397.7 bits;  conditional E-value: 3.8e-123
        Anp1   2 vekydlnklestadaaenkekvLiltplrdaekflpeyfenllkltyphelidLaflvsdtsegdktlealeeelkklq.................... 80 
                 vekydl+k+++++++aen++++L+++plrdae++lp +f++l+++typhelidLaflvsd+s+gd+tleal +++++lq                    
  CCD24845.1 157 VEKYDLKKFDGSRNGAENRDHLLLCVPLRDAESVLPLMFKHLMNMTYPHELIDLAFLVSDCSDGDNTLEALLQYSRHLQngtlsqvfqdmdeyqyehsd 255
                 89************************************************************************************************* PP

        Anp1  81 ............................kkkkk.krfrsitilekdfgekisqsesdrhkvevqklRRklmaraRNsLlssaLkpehswvlwlDaDive 150
                                              ++++ k+frs++i++kdfg+ i+q++sdrh+v+vq++RRklm+raRN+L+++aLkp+hswv+w+DaDi+ 
  CCD24845.1 256 dtrgtknlhlkymnqeylkmvetafntpPHENYdKPFRSVQIFRKDFGQVIGQGFSDRHAVKVQGIRRKLMGRARNWLMANALKPYHSWVYWRDADIEL 354
                 **************************99667778***************************************************************** PP

        Anp1 151 tpktliedlishdkdvivpnvlrklpdelekeqpYDlnsWveseealelakkldeddvivegyaelatkrvhlaklrdengdpeeeveLDgVGgvsilv 249
                 +p+t++ed+++ d+dv+vpnv+r+lp++l++eqpYDlnsW+es+eal+lak+l eddvivegyae++t+rvhla++r+++gdp+++v+LDgVGgvsil+
  CCD24845.1 355 CPGTIVEDMMANDYDVLVPNVWRPLPEFLDSEQPYDLNSWIESDEALKLAKTLPEDDVIVEGYAEYPTWRVHLAYIREAQGDPTSVVDLDGVGGVSILA 453
                 *************************************************************************************************** PP

        Anp1 250 kaevfrqGamFpaft 264
                 ka++fr+G++Fpaft
  CCD24845.1 454 KAKLFRSGVHFPAFT 468
                 **************6 PP

>> Comm  Commissureless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.1e-05      0.25       5      74 ..      44     111 ..      40     128 .. 0.82
   2 ?   -1.1   0.0      0.39   2.3e+03      68      95 ..     485     512 ..     469     520 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.1e-05
        Comm   5 riindvwigivltLlilslvFclcsCflyrkfrtWkkkktardakstranssdtlveiereelpeyeaes 74 
                 ++ ++v ig+v++ +i +l++c +s f+ ++ r  k   ++  +k+++  +s  ++e++ +e  +y+ e+
  CCD24845.1  44 STAKNVAIGSVVSFIICALIYCGYSYFFNTSPRLGK--INLYANKNNKVSTSYKTTELSDKEYYNYDFEN 111
                 677899**********************99999988..55555566666666788888888888888775 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.39
        Comm  68 peyeaeslPsYtivsGLpsYddaleelk 95 
                 + y +  lP Yti       dd l+e+ 
  CCD24845.1 485 MGYRVGGLPHYTIWHIYEPSDDDLKEIA 512
                 5688888999999776666666666655 PP

>> DUF2232  Predicted membrane protein (DUF2232)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.2e-05      0.19      77     142 ..      38     103 ..      37     118 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.2e-05
     DUF2232  77 llkkkksaertliagtlafllgillafallalllgvnllaqvekeikesveealklyeeaGmsede 142
                 ++ kkks ++ +++g++++++   l+++ ++ +++ ++    ++ + +  +++ ++y+ +++s++e
  CCD24845.1  38 FIPKKKSTAKNVAIGSVVSFIICALIYCGYSYFFNTSPRLGKINLYANKNNKVSTSYKTTELSDKE 103
                 68899999999************************8887777777778888888888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.46
# Mc/sec: 3399.16
//
Query:       CCD24846.1  [L=664]
Description: hypothetical protein NDAI_0E00300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-18   66.8   0.1    1.9e-18   66.8   0.1    3.5  3  TAF8_C    Transcription factor TFIID complex subunit 8 C-term


Domain annotation for each model (and alignments):
>> TAF8_C  Transcription factor TFIID complex subunit 8 C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.1     1e-22   1.9e-18       2      49 .]     180     227 ..     179     227 .. 0.98
   2 ?   -3.5   3.3      0.89   1.6e+04      24      33 ..     459     468 ..     443     482 .. 0.53
   3 ?   -3.3   0.1       0.8   1.4e+04      31      45 ..     592     606 ..     581     606 .. 0.66

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 1e-22
      TAF8_C   2 iPshlPpfPppHTYkrTpvyneretdpkkirekaaeqsrlaekaLrkL 49 
                 i s+lP+fPp+HTYk+Tp++n+++td+k i++k++e++ ++ekaL+++
  CCD24846.1 180 ISSWLPSFPPDHTYKFTPQFNNPITDEKLIKQKLVEEGTKSEKALLNF 227
                 789*******************************************97 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.89
      TAF8_C  24 retdpkkire 33 
                 r ++ +ki+e
  CCD24846.1 459 RLQELRKIQE 468
                 3334444444 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.8
      TAF8_C  31 irekaaeqsrlaeka 45 
                    + +e++ ++e+a
  CCD24846.1 592 QDIRTTEEQTNVEQA 606
                 445778888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2462  (0.137319); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 4406.71
//
Query:       CCD24847.1  [L=285]
Description: hypothetical protein NDAI_0E00310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1488  (0.082994); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2107.62
//
Query:       CCD24848.1  [L=407]
Description: hypothetical protein NDAI_0E00320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      3e-15   56.1   2.5    8.4e-15   54.7   2.5    1.8  1  CTK3_C         CTD kinase subunit gamma CTK3 C-terminus
    3.2e-05   23.9   4.5       0.03   14.3   0.1    3.0  3  CTK3           CTD kinase subunit gamma CTK3
  ------ inclusion threshold ------
      0.027   14.0   1.0      0.072   12.6   1.0    1.7  1  Fzo_mitofusin  fzo-like conserved region


Domain annotation for each model (and alignments):
>> CTK3_C  CTD kinase subunit gamma CTK3 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   2.5   1.4e-18   8.4e-15       5      66 ..     326     397 ..     324     400 .. 0.74

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.4e-18
      CTK3_C   5 ilkRiEeDRErhKRlrEniWvvprsk...eks..........lateaEfenlWeetsdlneddeeealeeleeln 66 
                 i++R+E+DRErhKRl+E+ Wvv+r+    + +          +++ +Efe lW++t+   ++ + ++ ++++e+n
  CCD24848.1 326 IIRRMENDRERHKRLKEKSWVVDRNIqrqR-QkgqplntkklILNVNEFESLWNNTNV--NKLTIDDIKNMKEMN 397
                 89*********************9985441.134443333445559*********994..556777777777776 PP

>> CTK3  CTD kinase subunit gamma CTK3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1     5e-06      0.03       1      22 [.       1      22 [.       1      30 [. 0.86
   2 !   10.3   0.2     9e-05      0.54      23     100 ..      43     122 ..      36     146 .. 0.69
   3 ?   -1.5   0.1       0.4   2.4e+03      90     118 ..     290     318 ..     278     323 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5e-06
                --HHHHHHHHHHHHTT--SSGG CS
        CTK3  1 mDpFEvrsqFsqlLrkLtasvq 22
                mD+FE+r qF+q+L++L+ +  
  CCD24848.1  1 MDSFEARLQFIQVLKNLQKNLS 22
                9****************87655 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 9e-05
                 GTHHHHHHHHH.TGGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHTT--S...THHHHHHHTHHHHHHHHS-H CS
        CTK3  23 slqkaaqfAlk.nkdkeedlfscileqlesadlNtranilyfidllleeslkegqseks.pYveslkrdilklvdsvvPg 100
                 s+  + qf l+ +kd+ ed+++c+++  ++ +   r n+l++   +l     + +++++    ++l   ++ l + ++P+
  CCD24848.1  43 STVDPIQFYLRsYKDHFEDFHQCLFDTTNKMNSLDRLNVLFYYSKILITLRSNMNEFNEkVIFNVLLPSLCDLYHLILPN 122
                 55566778887367889*************98888999987766555444444333333255566677777777777775 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.4
                 HHHHHHHHS-HHHHHHHHHHHHHHHHHHH CS
        CTK3  90 ilklvdsvvPgsgaaNlksvrkilkslkl 118
                  ++ v++ + +s   N  ++ k+ ksl +
  CCD24848.1 290 TPTAVHTNMHDSSGNNTTNINKVHKSLTT 318
                 55566666667778888888999988876 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.0   1.2e-05     0.072      81     154 ..     280     353 ..     276     357 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
  Fzo_mitofusin  81 rlivsltsancshqvqqelsstfarlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLek 154
                    +l v++t++n  + v+ +++    + ++++++++k+l+++ + +   i+++e+  ++ k l++k   +++++++
     CCD24848.1 280 QLAVTTTTNNTPTAVHTNMHDSSGNNTTNINKVHKSLTTNDRIIPIIIRRMENDRERHKRLKEKSWVVDRNIQR 353
                    7889*************************************************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1070  (0.0596798); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2905.30
//
Query:       CCD24849.1  [L=1041]
Description: hypothetical protein NDAI_0E00330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     9e-169  562.0  14.3     9e-169  562.0  14.3    3.1  3  Bul1_N    Bul1 N terminus
      4e-82  275.7  12.5    9.2e-58  195.8   4.5    5.0  5  Bul1_C    Bul1 C terminus


Domain annotation for each model (and alignments):
>> Bul1_N  Bul1 N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   9.2      0.24   2.1e+03      61     138 ..      22     107 ..       5     121 .. 0.41
   2 !  562.0  14.3    1e-172    9e-169       9     450 ..     176     627 ..     169     628 .. 0.93
   3 ?   -2.8   4.6      0.23     2e+03      59     166 ..     713     845 ..     700     848 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.24
      Bul1_N  61 sasslsssssasvsasseslsssslsevsareeeee........ealeteesleaeekkneeieddlndsdntildniykLpklts 138
                 s +++++++++++s+++++  ++ l++  ++++ +         ++++++++  ++++++++ +d++n + +   dn++ ++ ++ 
  CCD24849.1  22 SITTTTPNTTTTTSTTTSTARRPLLRSNPTADNIHLnldnrhylSKNNNKKNSDNTNHNDQSEDDNINGTSQQSNDNLQAMKSASM 107
                 22223333333333333333333333322222222233333222111112222222233333344455555555555555555554 PP

  == domain 2  score: 562.0 bits;  conditional E-value: 1e-172
      Bul1_N   9 esesssneeqtelvdvLPSfemynsllkrldqsnvdedlhdlPPsYeevesssasslsssssasvsasseslsssslsevsareeeee........... 96 
                  ++++++ +++ lvdvLPSf myn+l+++++q+nvd+d+hd PP Y+e+ ++ +  ls++s+++++a+++ +++  ++ ++++ ++++           
  CCD24849.1 176 GTTTTDQ-TNNLLVDVLPSFYMYNVLHRHIPQGNVDPDIHDYPPNYQETITHVNPLLSNASTNDTTATTTANENIVENLTTTTMTTTTppsnntsssnl 273
                 4555666.99****************************************9999997777777777666655555444444444433366677788889 PP

      Bul1_N  97 ......ealet.eesleaee...............kkneeieddlndsdntildniykLpkltskpleisikvtkkvpkpheknelesilkeytsGDli 173
                       ++l+t ++++++++               + ++eieddlndsd++i+d++y+Lpkl++ p+ei+i+vtk+v+kph kne+esilkeytsGD+i
  CCD24849.1 274 nilnnlHPLNTrHYNISSNTnstshinngsssstnELHTEIEDDLNDSDSIIIDKLYSLPKLAT-PIEIDIRVTKNVSKPHIKNEEESILKEYTSGDII 371
                 999999888888888888889999999999**999999**************************.********************************** PP

      Bul1_N 174 nGyviieNkssepvkFemfyvtLegtisvidkksakkkkkrtvkrfLrMvDlsASwsytnidrsvgievvpgevDsyDgtilgLdneriLePgtkYKkF 272
                 +Gy+iieN+ss+++kFemfyvtLe++is+id+    +++krtvkrfLrMvDlsASwsyt+id s+gi++vpg++DsyD++i+gL+n+riLeP+tkYKkF
  CCD24849.1 372 HGYCIIENRSSQRLKFEMFYVTLEAYISIIDN----VRGKRTVKRFLRMVDLSASWSYTDIDLSSGINLVPGQIDSYDNSIIGLKNNRILEPKTKYKKF 466
                 ********************************....*************************************************************** PP

      Bul1_N 273 FtFklPekLLDvtCkhellkHlllPPslGidktenykkyskikvnkaLGyGhlgikgspiltkdlsfedlSisYtveAriigkaskkeqkeeeildnkk 371
                 F+FklP++LLD+tCk+e+++H+llPPs+Gid+++n  kys+ikvn++LG+Ghlg+kgspilt+d+s+e++Si+Yt++Ari+gk+              k
  CCD24849.1 467 FMFKLPNQLLDITCKQEQFSHCLLPPSFGIDRYKNSRKYSSIKVNNVLGCGHLGVKGSPILTSDISDENVSINYTIDARIVGKD-------------LK 552
                 ************************************************************************************.............99 PP

      Bul1_N 372 edeyvimkekeyfLRviPfgkelyeesklvgeeeakkllkdlvklikeriealeeifkelekkeaitaediketdlsgt 450
                 +++++imkekey+LRviPfg+     ++l++++ + k+lkdl  li++ri+ale++f++l++ e+i ++di+++dlsgt
  CCD24849.1 553 TQKLNIMKEKEYNLRVIPFGFG----TTLTSRNVFDKQLKDLRLLIQDRIDALEKVFERLKNDEPIINSDIHSNDLSGT 627
                 **********************....99999*********************************************997 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.23
      Bul1_N  59 sssasslsssssasvsasseslsssslsevsareeeeeealet.eesleaee.....................kkneeieddlndsdntildniykLpk 135
                 +ss s ++s  s+++ ++s+++ss+    +s+r +  ++ ++t ++s+ ++                      +k++++e+  n++d+   +n  +L +
  CCD24849.1 713 ESSLS-TDSIISNNIPQQSSTSSSTIGIISSNRRTPLQHVSTTeHQSMDKSGlivistqipkaslpylspsllRKTNKFEN-KNRHDQ---ENWLRLSR 806
                 22222.345555555444444444443333333332333333334444444488888889999999999888633333332.222222...33333444 PP

      Bul1_N 136 lt.......skpleisikvtk.kvpkpheknelesilke 166
                 l+          lei++   + + + ph++++++s+  e
  CCD24849.1 807 LNtdeenteLTKLEIKLTCLQsNNSTPHNPPQIQSVNVE 845
                 433334435336777777665145677889999988766 PP

>> Bul1_C  Bul1 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   4.6      0.88   7.9e+03     212     217 ..      70      75 ..       9     130 .. 0.52
   2 ?   -2.3   2.2      0.26   2.3e+03     178     178 ..     274     274 ..     213     325 .. 0.46
   3 ?   -1.1   2.0      0.11     1e+03     145     194 ..     688     741 ..     582     763 .. 0.69
   4 !  195.8   4.5     1e-61   9.2e-58       1     169 [.     796     964 ..     796     971 .. 0.95
   5 !   94.0   1.0   1.1e-30   9.9e-27     198     272 .]     964    1039 ..     952    1039 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.88
      Bul1_C 212 eleyer 217
                 +++ + 
  CCD24849.1  70 NKKNSD 75 
                 111111 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.26
      Bul1_C 178 k 178
                 +
  CCD24849.1 274 N 274
                 1 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.11
      Bul1_C 145 vtelnevfkkqvetlkdesesslseksnsssssklssstssassteaes....s 194
                   +l++vf     + ++ s++s +++s+ s++s +s+++ ++sst++++    s
  CCD24849.1 688 SPNLKNVFFPGFLSGSHYSTNSVTTESSLSTDSIISNNIPQQSSTSSSTigiiS 741
                 347888888888888888888888888888888888887777777766555441 PP

  == domain 4  score: 195.8 bits;  conditional E-value: 1e-61
      Bul1_C   1 hdqenwlrllellseeekepLekldikLtciqsnnslphsppeiqsitteLicitaksdnsiPiklnselllnkeklkeikktfkefekkikeykkkfe 99 
                 hdqenwlrl+ l ++ee++ L+kl+ikLtc+qsnns+ph+pp+iqs+++eL++i+ ksdnsiPikl++  lln+ekl++i+  fk++++ i++y+k f+
  CCD24849.1 796 HDQENWLRLSRLNTDEENTELTKLEIKLTCLQSNNSTPHNPPQIQSVNVELLAINGKSDNSIPIKLQAAALLNEEKLSHITMSFKAYQNAISNYRKGFR 894
                 9************************************************************************************************** PP

      Bul1_C 100 enkeklneLynlsreistkreLkFtdfiskqlanDveslanlkvkvtelnevfkkqvetlkdesesslse 169
                 en +klneL+n+ r++s++r+L+Ftdfi++q+ nD+esl+nl+v+   + ++f k   +++  +e++ s+
  CCD24849.1 895 ENLMKLNELFNVGRTLSNARVLEFTDFITDQMRNDIESLCNLEVERIPVPDIFVKSALKQNVPEEKIPST 964
                 ******************************************************9998888777666554 PP

  == domain 5  score: 94.0 bits;  conditional E-value: 1.1e-30
      Bul1_C  198 kfkeqivkeWekkkeleyerevnvnLelne.dlketlvPsFesClcsRlYcvrvnikfdnhigsakidvPvsvkkl 272 
                  + ++ +++ W k + +ey+r++ +nLe+ e + ++tl+P FesClc+R+Yc+rv++kf+nhig a+id+Pvsvkkl
  CCD24849.1  964 TGSSSLTTPWIKCGPSEYQRKLILNLEYSEkNNNHTLIPDFESCLCCRFYCIRVQVKFENHIGLATIDIPVSVKKL 1039
                  556778899******************9764899****************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1041 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1482  (0.0826594); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.83u 0.28s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 6681.78
//
Query:       CCD24850.1  [L=313]
Description: hypothetical protein NDAI_0E00340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-97  324.5   0.1    3.8e-97  324.2   0.1    1.0  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
    9.6e-12   45.5   0.0      2e-11   44.4   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    5.3e-10   39.8   0.0      1e-09   38.9   0.0    1.5  1  Methyltransf_11  Methyltransferase domain
    3.7e-08   33.3   0.0      6e-08   32.6   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
    6.4e-08   33.2   0.0    1.1e-07   32.5   0.0    1.4  1  Methyltransf_12  Methyltransferase domain
    4.8e-07   29.8   0.0    7.4e-07   29.2   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.014   15.2   0.0       0.25   11.2   0.0    2.4  3  Methyltransf_8   Hypothetical methyltransferase


Domain annotation for each model (and alignments):
>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.2   0.1  1.5e-100   3.8e-97       5     233 .]      69     312 ..      65     312 .. 0.95

  Alignments for each domain:
  == domain 1  score: 324.2 bits;  conditional E-value: 1.5e-100
                      XXXXXXXXXX-HHHHHHHHHHHHHTTTHHHHHH.HHHHH--S--TT.....EEEEES-TT-HHHHHHHHHHHHHH.....EEEEEES-HHHHHH CS
  Ubie_methyltran   5 keekvkevfesvaskyDlmndvlslgihrlWkk.fveklvavkrga.....kvlDvagGtgDlafklsdsvgekg.....kvvvlDinenmLkv 87 
                      ke+ v +vf+svaskyDlmndv+slgihrlWk+ f++kl+ +kr +     +++DvagG+gD+af ++d ++ek+     +++++Din++mLk+
       CCD24850.1  69 KEKMVGHVFSSVASKYDLMNDVMSLGIHRLWKNhFINKLDPGKRLTskqplNFIDVAGGSGDIAFGILDYAKEKYhdqvsTMDIVDINPDMLKE 162
                      6778*****************************9***99866543334444***********************999999************** PP

                      HHHHHHHHTSS....TEEEEE--TTT-TTS-.T-EEEEEEES-GGG-S-HHHHHHHHHHHEEEEEEEEEEEE----SHHHHHHHHHHHH.HHHH CS
  Ubie_methyltran  88 gekklkeegki....nieflqanaeeLpfed.dsfDvvtvsfGlrnvtDklkaLkeayrvlkpGGrlvvlefskvelpllsqayelyskevlPv 176
                      gek++ ++g +    +++f++ ++e+L+  + +s+D++t+sfG+rn+tD++ +L++ayrvlkpGG +++lefsk+e+ l++ ay++++k +lPv
       CCD24850.1 163 GEKRALDQGRYyndpRVRFMVQDGEKLDAIEsNSKDIYTISFGIRNFTDIQAGLNTAYRVLKPGGLFYCLEFSKIENDLMDLAYQQWAK-ILPV 255
                      *********9999999***********98877*********************************************************.**** PP

                      HHHHHHS-HHHHHHHHHHHHHS--HHHHHHHHHHTTEEEEEEEEEGGGTEEEEEEEE CS
  Ubie_methyltran 177 lGkllakdldsyryLvesirafPdqetlkeliedaGfksveyesltgGvvaihigvk 233
                      +G+++a+d+dsy+yLvesi++fP+qe++k++ie+aGf+sv yeslt+G++aih+gvk
       CCD24850.1 256 MGSVIANDFDSYQYLVESIERFPNQENFKTMIEKAGFQSVGYESLTFGICAIHWGVK 312
                      *******************************************************98 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   7.7e-15     2e-11       2      97 .]     122     227 ..     121     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 44.4 bits;  conditional E-value: 7.7e-15
                      EEET-TTSHHHHHHHCTS....T..SSEEEEEESSHHHHHHHHHHHHHTTT.....TEEEEESBCCGBS.SSTTTEEEEEEESTGGGSSHHHHH CS
  Methyltransf_25   2 LdlGcGtGrltlalakrl....g..kakvtgvDiseemleaareraeeegl.....nvefvqgdaedlp.fedgsfDlvvssgalhhlsdedle 83 
                      +d++ G+G++++ +++      +   +++  vDi+++ml++ ++ra ++g      +v+f+++d e+l+  e++s D+ ++s+++  ++  d++
       CCD24850.1 122 IDVAGGSGDIAFGILDYAkekyHdqVSTMDIVDINPDMLKEGEKRALDQGRyyndpRVRFMVQDGEKLDaIESNSKDIYTISFGIRNFT--DIQ 213
                      6999****99988887755433234678899***************9955555666************945999********9999988..899 PP

                      HHHHHHHHHEEEEE CS
  Methyltransf_25  84 kalkeiarvLkpgG 97 
                      + l+ ++rvLkpgG
       CCD24850.1 214 AGLNTAYRVLKPGG 227
                      *************9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   4.1e-13     1e-09      15      96 .]     144     231 ..     122     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 4.1e-13
                      HHTTSEEEEEES-HHHHHHHHHHCCHHT-.....EEEETTEECCCT.SS-TT-EEEEEEES-CCC-CCHHHHHHHHHHHEEEEEEEEE CS
  Methyltransf_11  15 akrgarvvgvDlskemlklakekaseegl.....kvefvvadaekl.pfednsfDlvvssevlhhvedpekalkeiaRvLkpgGllvi 96 
                      ++++++   vD+++ mlk  +++a ++g      +v+f+v+d ekl  +e+ns D+ ++s+ + ++ d ++ l+ ++RvLkpgGl+++
       CCD24850.1 144 HDQVSTMDIVDINPDMLKEGEKRALDQGRyyndpRVRFMVQDGEKLdAIESNSKDIYTISFGIRNFTDIQAGLNTAYRVLKPGGLFYC 231
                      3444777789*******9998888888778899*************88*************************************986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   2.3e-11     6e-08       2     114 ..     116     244 ..     115     291 .. 0.74

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 2.3e-11
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkae.....vvGiDiseeaielArenaqklgld....nveFeqgdieeleklledekfDlilsnevlna 86 
                      ++ l+++D++ G+G+++f + + + +k +     +  +Di++++++  +++a ++g      +v+F ++d e+l+  +e ++ D+ +    +  
       CCD24850.1 116 KQPLNFIDVAGGSGDIAFGILDYAKEKYHdqvstMDIVDINPDMLKEGEKRALDQGRYyndpRVRFMVQDGEKLDA-IESNSKDIYTISFGIRN 208
                      567899***************94444444444557789************998877444599*************6.788*****88887889* PP

  Methyltransf_31  87 ladpdkileeiervlkpggilliedpr........l 114
                      ++d ++ l+ + rvlkpgg + + +++        l
       CCD24850.1 209 FTDIQAGLNTAYRVLKPGGLFYCLEFSkiendlmdL 244
                      *************************99533322221 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   4.2e-11   1.1e-07       2      99 .]     123     229 ..     122     229 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 4.2e-11
  Methyltransf_12   2 eiGcGtGsllrallekl......pdieytgvDispsai.edakeklakrennnnnnvelealdlldldgg..ssfDlvvasnvlhhlkdirevl 86 
                      ++ +G+G++++ +l++       + ++   vDi+p+++ e  k+ l + + +n  +v++ ++d ++ld    +s D+ ++s+ + ++ di++ l
       CCD24850.1 123 DVAGGSGDIAFGILDYAkekyhdQVSTMDIVDINPDMLkEGEKRALDQGRYYNDPRVRFMVQDGEKLDAIesNSKDIYTISFGIRNFTDIQAGL 216
                      899***********999999996666677*********6666666777788899999999999998888899********************** PP

  Methyltransf_12  87 dnirklLkpgGrl 99 
                      + ++++LkpgG +
       CCD24850.1 217 NTAYRVLKPGGLF 229
                      ***********75 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.9e-10   7.4e-07      20     162 ..     115     294 ..      87     296 .. 0.73

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 2.9e-10
  Methyltransf_23  20 lraggrvLdiGcGtG.il...levlrengf....svtgvDlspeaveiae.............kakkaqkdqfdeqeaaepqgkfdlIvlrevl 92 
                       +++ + +d++ G+G i    l++++e+ +    +++ vD++p + ++ e               +++++d +    +a ++++ d+ + ++++
       CCD24850.1 115 SKQPLNFIDVAGGSGdIAfgiLDYAKEKYHdqvsTMDIVDINPDMLKEGEkraldqgryyndpRVRFMVQDGE--KLDAIESNSKDIYTISFGI 206
                      45666**********5434556666665444334888888888887777799999998887555555555555..33333555667777789** PP

  Methyltransf_23  93 ehvpdppellrqiatllkpgGylllseplasl.....................kedrllldwlylvpagrhisffsarslkelleeaGlev 162
                       ++ d  + l+++++ lkpgG+++++e+ +                         ++++++++ylv+     +f + +++k++ e+aG++ 
       CCD24850.1 207 RNFTDIQAGLNTAYRVLKPGGLFYCLEFSK-IendlmdlayqqwakilpvmgsVIANDFDSYQYLVES--IERFPNQENFKTMIEKAGFQS 294
                      ***************************844.2355677777777777777764467777778888866..6699***************86 PP

>> Methyltransf_8  Hypothetical methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.99   2.5e+03      76     107 ..     121     158 ..      83     161 .. 0.63
   2 ?   11.2   0.0   9.8e-05      0.25     121     160 ..     195     235 ..     180     263 .. 0.76
   3 ?    0.9   0.0      0.14   3.5e+02     155     181 ..     269     295 ..     264     303 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.99
                     EEEES-TT-HHH......HH--S-..EEEEESS-SSTT CS
  Methyltransf_8  76 vadlGcGeakia......eavrekekvrsfdlvavner 107
                      +d+  G   ia       + + +++v ++d+v +n++
      CCD24850.1 121 FIDVAGGSGDIAfgildyAKEKYHDQVSTMDIVDINPD 158
                     45666666666633333222233457777777777765 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9.8e-05
                     T-EEEEEEES---.SS-HHHHHHHHHHHEEEEEEEEEEEEG CS
  Methyltransf_8 121 esvdvavfclslm.gtnladflkeanrvlkvGGllkvaevk 160
                     +s d+  + + +   t+++  l+ a+rvlk+GGl++  e +
      CCD24850.1 195 NSKDIYTISFGIRnFTDIQAGLNTAYRVLKPGGLFYCLEFS 235
                     55565555555531489999****************98864 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.14
                     EEEEEGGG-S-HHHHHHHHHCTTEEEE CS
  Methyltransf_8 155 kvaevksrfesvklfaraltklGfevk 181
                     ++ e   rf++ + f+  ++k Gf+ +
      CCD24850.1 269 YLVESIERFPNQENFKTMIEKAGFQSV 295
                     5567778*****************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2260.28
//
Query:       CCD24851.1  [L=1163]
Description: hypothetical protein NDAI_0E00350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-28   96.3   1.2    1.1e-27   95.4   1.2    1.4  1  Zds_C     Activator of mitotic machinery Cdc14 phosphatase ac
  ------ inclusion threshold ------
        2.8    7.9   5.0       0.84    9.6   1.0    2.1  2  DUF2824   Protein of unknown function (DUF2824)


Domain annotation for each model (and alignments):
>> Zds_C  Activator of mitotic machinery Cdc14 phosphatase activation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   1.2   1.3e-31   1.1e-27       2      52 .]    1062    1112 ..    1061    1112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 1.3e-31
       Zds_C    2 pdvvmydtRfpihvERaiYRlsHlKLanprRpLreQVLlSNfMYsYLnlvn 52  
                  ++v+m+d+R+ i+vERaiYRlsHlKL++ +R+LreQVLlSNfMY+YLnlvn
  CCD24851.1 1062 STVIMFDHRLGINVERAIYRLSHLKLSDSKRELREQVLLSNFMYAYLNLVN 1112
                  89************************************************8 PP

>> DUF2824  Protein of unknown function (DUF2824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2      0.37   3.3e+03      13      35 ..      78     100 ..      71     102 .. 0.83
   2 ?    9.6   1.0   9.4e-05      0.84       5      45 ..     601     641 ..     598     650 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.37
     DUF2824  13 flddkakvgaavengdeYqlkpd 35 
                  ++++ ++  +++n+++  ++++
  CCD24851.1  78 RVNNNNNISSISNNNNNLSIHNS 100
                 478999**********9999887 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 9.4e-05
     DUF2824   5 enidrlieflddkakvgaavengdeYqlkpdavYlgvyegl 45 
                 +nid+l +  ++++++ ++  n+++Y++  d  +  v+++ 
  CCD24851.1 601 NNIDKLTASNSNNTNTNNINSNNEQYNISSDLSHASVSQDS 641
                 7****************************999988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2630  (0.14669); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.44u 0.38s 00:00:01.81 Elapsed: 00:00:00.54
# Mc/sec: 6512.38
//
Query:       CCD24852.1  [L=122]
Description: hypothetical protein NDAI_0E00360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-51  172.0   9.9    9.6e-51  170.6   9.9    1.6  1  DUF1892         Protein of unknown function (DUF1892)
  ------ inclusion threshold ------
      0.045   13.9   0.0      0.059   13.5   0.0    1.1  1  SpoU_methylase  SpoU rRNA Methylase family


Domain annotation for each model (and alignments):
>> DUF1892  Protein of unknown function (DUF1892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.6   9.9   1.1e-54   9.6e-51       2     108 ..       3     122 .]       2     122 .] 0.98

  Alignments for each domain:
  == domain 1  score: 170.6 bits;  conditional E-value: 1.1e-54
     DUF1892   2 stenlyrllilleeeleeaelkdestsdakeee.............kkthefvdelllpfevdeldllnewfdkfdeeicipneGhikyeissdGlivl 87 
                 st+n+yrl+illeee+ e++lkd s+++a+e+e             kk+hef++el+lpf+++eldllnewfdkfdeeicipneGhikyei+sdGlivl
  CCD24852.1   3 STNNMYRLMILLEEEIGEPDLKDGSIDEATETEtkdvhnsdeeknvKKMHEFIEELILPFGTEELDLLNEWFDKFDEEICIPNEGHIKYEITSDGLIVL 101
                 799*************************9999999**************************************************************** PP

     DUF1892  88 lldkeieevveevkkfveknk 108
                 lldkeie+vv+e+kkf+e+n+
  CCD24852.1 102 LLDKEIEDVVGEIKKFIETNQ 122
                 ******************995 PP

>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.6e-06     0.059      79     128 ..      39      89 ..      21      91 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.6e-06
                     EEESTT-SEGCCS.HHHTTEEEEEEBTTTBS-HHHHCTSSEEEE----TTS CS
  SpoU_methylase  79 vatslkgkslsei.dlkekvalvfGnEdkGlsnelleladrlvkIpmsgev 128
                     v  s ++k+++++ ++ e+ +l fG+E+  l ne+ ++ d+ ++Ip +g++
      CCD24852.1  39 VHNSDEEKNVKKMhEFIEELILPFGTEELDLLNEWFDKFDEEICIPNEGHI 89 
                     44444566666555677*****************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1006  (0.0561102); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 942.91
//
Query:       CCD24853.1  [L=222]
Description: hypothetical protein NDAI_0E00370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-16   58.7   0.1    7.7e-16   58.0   0.1    1.3  1  Pribosyltran  Phosphoribosyl transferase domain


Domain annotation for each model (and alignments):
>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.1   4.3e-20   7.7e-16      11     127 ..      47     162 ..      40     168 .. 0.92

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 4.3e-20
                   EEEEEEETTEEEEEE--GGGEEEEEEETTTHHHHHHHHHHS.........TT-EE-EEEEEE-TTT--EE........EE----TTSEEEEE-SEES CS
  Pribosyltran  11 ildavarlaaeileeyngkpdvvvgiargGvpfakiladeL.........evplayvrkvkyrpdgseeaargssdesrlledpagkkVliVDDild 98 
                   +++ +  +a  i+++ + k dv++g+a++G+p+a+i+  +L         ++++ + rk+ ++++ ++++           +++ +k+Vli+DD+++
    CCD24853.1  47 LSNLATAYAIAIIQS-DLKFDVIFGPAYKGIPLASIVCVKLaeiggskfqNIQYSFNRKEAKDHGEGGNI---------VGASLNNKRVLIIDDVMT 133
                   556677777888888.8*****************************************************.........5799************** PP

                   SSHHHHHHHHHHHCC-BSEEEEEEEEE-H CS
  Pribosyltran  99 tGgTllaalelLkekgpeevriavlvdkp 127
                    G+++++a+e++ +++ ++v+++  +d+ 
    CCD24853.1 134 AGTAINEAFEIIGKANGTVVGSIIALDRQ 162
                   ***********************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1666.49
//
Query:       CCD24854.1  [L=278]
Description: hypothetical protein NDAI_0E00380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-30  104.6   0.0    7.4e-30  103.7   0.0    1.5  1  SRP19     SRP19 protein


Domain annotation for each model (and alignments):
>> SRP19  SRP19 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.0   4.1e-34   7.4e-30       1      94 []     101     197 ..     101     197 .. 0.92

  Alignments for each domain:
  == domain 1  score: 103.7 bits;  conditional E-value: 4.1e-34
                 EEECCCCBTTS-CCCT--S-CCCSBSS--HHHHHHHHHHCTSCEEEEEEECTTSSTTCCEEEEEC-.............SS-CHHHHHHHHHHHHHH CS
       SRP19   1 viYPvYldskktrkeGRrvpkelavenPtaqeiaealkalglevvvepeksyPrdwanpGrVrvklkedgkevnek...iknkkellkkiaellkel 94 
                 ++YP+Y+d+++++keGRrvpkelavenP+a+++a+a+ +lgl +v+e++k++P+d+ npGr+r+ lk++g+ + +    +  k+el+k+ia++l+++
  CCD24854.1 101 ILYPCYFDKNRSHKEGRRVPKELAVENPLAKTMADAAGNLGLICVFEDQKTHPQDFGNPGRIRILLKQNGQIAADGnrfKGGKRELMKSIAKYLQKH 197
                 69****************************************************************988776554445366*************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2253.93
//
Query:       CCD24855.1  [L=1170]
Description: hypothetical protein NDAI_0E00390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-35  120.7   2.0    6.8e-35  120.7   2.0    3.2  2  PXA       PXA domain
    2.5e-23   82.8   0.0    9.7e-23   80.9   0.0    2.1  1  Nexin_C   Sorting nexin C terminal
    3.6e-11   43.0   3.6    3.6e-11   43.0   3.6    2.9  2  PX        PX domain


Domain annotation for each model (and alignments):
>> PXA  PXA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   2.0   1.1e-38   6.8e-35       1     181 [.      85     270 ..      85     271 .. 0.85
   2 ?    1.0   0.3     0.061   3.6e+02     115     148 ..     723     767 ..     633     770 .. 0.71

  Alignments for each domain:
  == domain 1  score: 120.7 bits;  conditional E-value: 1.1e-38
         PXA   1 speldeelhellalilrdfVlsWYski.ss.deeFptevrsilrsviralanrlkkvDlaqllltrlldlltshlrdyrqaeekvkskkae.....ees 92 
                 s+++++el+++++lilrdf++sW+++i ++ d++Fp+++r +lr ++ +l++r+ + D ++ l+ +ll+l+t+ ++ y+ a+e++ ++  +     ++ 
  CCD24855.1  85 SSKISKELENIIDLILRDFINSWFTRIdPNeDSSFPKAIRCLLRLAVINLQKRVATEDTLENLILKLLPLFTKYVNTYCDARESILNDPTSqkalqNNF 183
                 579************************6336999********************999*999999********************999987544444444 PP

         PXA  93 dldlaakffa.lephpalsavlrdieeskea.elaylrslverlLslllppedlesetvrtlvreilanvvlkplleklsdPdfinqliik 181
                 + +la +f++  ++h a+  ++   +++ ++   +yl  l+++lLs ++++++l+s+ v++l+rei+ +++++pl++k++dPd++n+++i+
  CCD24855.1 184 EFQLAVEFNKnYKLHKAIP-LR---SNELDNdIGKYLNGLSQQLLSEIIDENELKSPFVSILLREIMDSCIFNPLVSKFTDPDTWNLIMIS 270
                 4444444444566666664.22...334444259******************************************************997 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.061
         PXA 115 d...........ieeskeaelaylrslverlLslllppedleset 148
                 +           + ++++++l+ lr+  ++lL+ l ++e l++++
  CCD24855.1 723 ElellnylvlkaELTNNQNQLKLLRKSQKALLRELKNEELLQQQC 767
                 133333334443445577899999999999999999999888876 PP

>> Nexin_C  Sorting nexin C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.0   1.6e-26   9.7e-23       1     111 [.    1028    1140 ..    1028    1141 .. 0.93

  Alignments for each domain:
  == domain 1  score: 80.9 bits;  conditional E-value: 1.6e-26
     Nexin_C    1 WlrrqaltvlkqvlqqllgdtierwlkekiekltseeavaslikklrdalW.Pdg....eskaesaperseeeklrtraearklLlellpdalvsvv 92  
                  Wlr++a+    +vlqqllg+tie+++k +ie+++see + +++  l+++lW  +g    +++++ +p r+  ek rtr + + +L++l+++++++vv
  CCD24855.1 1028 WLRGKAI---STVLQQLLGSTIEKYIKINIEEIRSEEGIYEMLGLLKKSLWgVNGsitkRKTEPIRPIRTPGEKTRTRCDSQVVLQSLFIELCGKVV 1121
                  *****99...*****************************************73446765566666799***************************** PP

     Nexin_C   93 GrknaeealkrifellQnp 111 
                  G +n+++a+ r++ +lQn+
  CCD24855.1 1122 GLSNSRDAAIRVHGMLQNR 1140
                  *****************97 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.15   9.2e+02      76     112 ..     550     584 ..     488     585 .. 0.70
   2 !   43.0   3.6   6.1e-15   3.6e-11      10     109 ..     790     899 ..     781     902 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.15
                 SHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHHS CS
          PX  76 deefiekrrkgLeeyLqrllnhpelrnsevlteFLev 112
                 ++ef+ek  k+ +++Lq +++ + ++++++ t+F+++
  CCD24855.1 550 QSEFFEK-FKESKVFLQ-MISSNDFTKTDIYTKFFTS 584
                 4555554.455689999.6666779999999999986 PP

  == domain 2  score: 43.0 bits;  conditional E-value: 6.1e-15
                 EEEEE..TTSSEEEEEEEEEETTS..SSEEEEEEEHHHHHHHHHHHHHHHT....TSTSTSSSTSGSSSSS..CTTSHHHHHHHHHHHHHHHHHHHTSC CS
          PX  10 erets..gskkhsyylyevelktg..akewtvkRrYsdFeeLhskLlrkfp....rvkiPplPkkvlfgsv..rkkdeefiekrrkgLeeyLqrllnhp 98 
                 e +t   + +++ yyl+ +e+  +   ++w++ RrY++F++L+++L++ +      ++  ++ +++++ s+    +     e+r+++Le yL+ lln p
  CCD24855.1 790 EHRTNinNLGETAYYLIDIEHCYNghTTTWETGRRYNEFFKLNEYLKKYYRsqvkFLQKNEMFPSKIPMSFkyHINPYLLYEERQHKLEMYLRALLNIP 888
                 55555565667778888888777777*************************8888444444444333333356778899******************** PP

                 HHHHSHHHHHH CS
          PX  99 elrnsevlteF 109
                 e+++++v++ F
  CCD24855.1 889 EICQDSVFRAF 899
                 ********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1324  (0.0738468); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.40
# Mc/sec: 8807.82
//
Query:       CCD24856.1  [L=1881]
Description: hypothetical protein NDAI_0E00400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.1e-198  659.5  80.7   8.1e-198  659.5  80.7    3.2  3  Nup188    Nucleoporin subcomplex protein binding to Pom34
    7.5e-17   61.2   0.7    2.6e-16   59.4   0.7    1.9  1  Nup188_C  Nuclear pore protein NUP188 C-terminal domain


Domain annotation for each model (and alignments):
>> Nup188  Nucleoporin subcomplex protein binding to Pom34
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  659.5  80.7    9e-202  8.1e-198       2     925 ..      94    1175 ..      93    1176 .. 0.87
   2 ?   -3.2   3.8      0.15   1.4e+03     110     217 ..    1213    1318 ..    1178    1348 .. 0.51
   3 ?   -0.1   1.3     0.018   1.6e+02     794     858 ..    1594    1667 ..    1529    1692 .. 0.70

  Alignments for each domain:
  == domain 1  score: 659.5 bits;  conditional E-value: 9e-202
      Nup188    2 vdefLeknkkkLleglpfkke...tssekknkktk..........elslrgily.niteknvedaeklsklLdldakeslrvisqtlkrekrklkdd 84  
                  +  +L+ nk+++++  +f+ +   +s++++nk++k          +l+lrg++  ni+++       +s++Ldld ke+l++is  +++++    dd
  CCD24856.1   94 IYHYLDTNKTLFTQLTHFNTSssaSSTHDNNKRSKsissppeyfnKLTLRGSTFdNINKDIFHKSWIISNFLDLDFKETLKIISLITNNNND---DD 187 
                  5578999999999999998765223344455555522222222224679999999********************************99733...33 PP

      Nup188   85 lekvlenerlsllasyilrERrsvLkvvlellnylsstlhplskeiaefveklsskyis.klisllqklieeltseeast................. 163 
                  +++     +++ l+  +l+ER+++L+++l ll+  + + + ++ ++++f+   s ++is +lisl q+liee  + ++                   
  CCD24856.1  188 ENNNTTVLTIQDLIMAVLKERNAILETLLILLS--NIDFPIIKDNLFNFFTIESIENISnDLISLFQSLIEENSTINYYDnifidekifldnanand 282 
                  3322333334449999*****************..899***********9999888876258**********999999999**************99 PP

      Nup188  164 ..kekneelseelqeliasenlleiiellkillllilnsevpkeevekwfkllk....................etnrrqefkhlldesesdeelvk 238 
                    k++n++   +l +l+ s+nl++i++llkil+ l+lns+ ++e+++kw++l++                    +    ++   + ++++++ ++++
  CCD24856.1  283 tgKNNNNDRLVQLIDLKNSNNLIYITNLLKILTNLFLNSNPSNEIILKWCQLFNnenvllalnsnitsftpslsS----TTTIANANSNSNEGNSIS 375 
                  99888999999999****************************************999999999999988775532....3344566667889999** PP

      Nup188  239 riesletiislevLdL...essidlksdd..llndeevfkkinsvlln.......lsskk.npiilyaWsiillrksilleeepee.....keskfi 317 
                   ++sl++++sl++L+L   +ssi++ +++  ++n++e+fk+i+s+  n       +++ + np + y+Ws+il++ksi+l+e+ ++      +++f+
  CCD24856.1  376 ILQSLFVVNSLLILGLdtkTSSIKILDSEnhFFNNKEIFKSIHSIFINslnfaslNDQLSlNPTLYYMWSFILYTKSIILDETFDNdnddnDTEDFV 472 
                  ****************998777777777678***************999*****9888899*******************986444444448899** PP

      Nup188  318 kkvfskse........issliarlasraeklnVfeylkklseilkddslyaailssvitaslnfislteeisdvikevlk.napneivekFleneaf 405 
                  + vf++++        + ++i+++as ae+lnV+++++ + + l++d++y++ilss++ + lnfi+++ ++s++ik  l+ + p+ +vekFl+n+ +
  CCD24856.1  473 NYVFNTKNnnepnnnnLLETINQFASIAEHLNVLNSIEIIIQDLSNDEIYPTILSSFLAFTLNFIPINIKFSHLIKLTLSkEIPRPFVEKFLTNNLI 569 
                  ****9765111111115578999*****************************************************9996268************** PP

      Nup188  406 ekkliiarakfPlleesLlplikllsingefAnfelkeLksYteklk..knelddlydidde........ntdliklksellvkppfesnkklslll 492 
                  e+k++++++k+Pll+e+Llp+i+++s++++fA f l++L+s+t+  +  ++e+d  ydi+d         ++dli lk+++ v  p+e ++++s+++
  CCD24856.1  570 ENKIATLKTKIPLLKEGLLPFINICSTSSQFADFHLNHLNSFTTFNSssLTESD--YDINDIdpetnqdiDSDLIILKKDISVRLPVEFDSNISIII 664 
                  ******************************************984432244444..7777766668888877************************* PP

      Nup188  493 pkgTkgkilp............vakeded.......................lvtFlykYngWsllgrvLqnllkvyssksas..ldeekveliidi 552 
                  pk+  +ki+p            +     +                       +v+F y+YngWs++g++L+nl  ++s+ s++  +d++ ++l+i+i
  CCD24856.1  665 PKDSIAKIIPitkeiatksstsT-----NdnnkddaisilsesapiipapssIVVFFYEYNGWSMIGHILENLARNFSDLSNTnsMDQDLQQLMISI 756 
                  **********8888877775542.....03345689******************************************7666667************ PP

      Nup188  553 ldlvtkvvss.disvekskeileslSayvdds...................dIievifrlleqaLhnrnvellvsclnlltalvpnfpqrvWsyLsk 629 
                  +dl+ k+vss + + e++ +i+++lS++  ++                   +I++vif+++e +L +rn+++l++c++++++lv n+p+ vWsyL++
  CCD24856.1  757 IDLIGKIVSSnELPQERINQIINELSNNSMNNmtddiknnnmydggaelnkEIFDVIFKIFETSLNKRNYQILSTCTSFTNNLVINYPHLVWSYLAR 853 
                  ******9965267899999*******9986666777999********************************************************** PP

      Nup188  630 sdLLprkgkeGlagtilgsiElvnGeYsftisllkLtktlvkeslslkndfpekskseiLsklifhlievfesfqkwrYnslkqrleigvllldvfs 726 
                  sdLL+++gk+G+a++ilg+iEl++G+Y+ftisl+kLt+ lv + l  +  ++ k+k e+ +kl+ hli+++e++q+w++n+++qr++ig++l+ +fs
  CCD24856.1  854 SDLLDKYGKTGFANIILGTIELSTGNYDFTISLIKLTNILVIDLLVRELTLSYKTKCEVTDKLLCHLIHIYENYQFWKFNDVNQRFQIGYQLTLIFS 950 
                  **********************************************99************************************************* PP

      Nup188  727 kiLelvygi.........dkevepeekvtkvlssaaecilslfltedsv..vragqsllniiesgsdnlesielsdisgqlydqliqlslslanlli 812 
                  +iL++ ygi         +++++++++ ++ + sa  +++++f + +      a ++l+ni+ s +++ +s ++++++g+ly++li+ s+ +a+ll+
  CCD24856.1  951 QILYHYYGIgcgidanknSNKTTTNNEYQQHFISAIGKLINTFANLKALdsQAASNTLINILLSSQNDQISSKGNKSFGNLYSELINISFYFAHLLV 1047
                  *************9998877777788888888899999999998875555256789***************************************** PP

      Nup188  813 sirsslnlspSplEkaLfsqspkLVdvyasyeslkkdiikLLtsLveap...............wedeyPSLLshLGeeaskalldsllsdLenkle 894 
                   irs+  l+p +lE  ++++s+k+V++y s ++l+  ii L+++L+++p                ++eyPSLLs+LGe++sk++l++l++dLen+l+
  CCD24856.1 1048 IIRSHTGLTPGNLEVLFYQNSKKFVEIYHSSPELRSPIITLFDALIKVPrkshilnnlvyndkkINQEYPSLLSYLGEDHSKLFLQTLAEDLENNLN 1144
                  *************************************77777777665422222222221111167788**************************** PP

      Nup188  895 dyklkislyeFlsavmegkQdGLsilFltgr 925 
                  dy+l +++y F+  +me +Q+GL+ilFltg+
  CCD24856.1 1145 DYQLSKNIYTFIGDLMETDQEGLAILFLTGQ 1175
                  ******************************8 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.15
      Nup188  110 kvvlellnylsstlhplskeiaefveklsskyisklisllqklieeltseeastkekneels..eelq.eliasenlleiiellkillllilnsevp 203 
                   v+++ll+ + +    l+   +    +++++ i+ l+++ ++  ++  ++e++ +e+n+++    +++  ++ s++   i+++++i  l +  s  +
  CCD24856.1 1213 SVAIKLLTTVARVCNTLKDARF---FNDDQNCIEILLDIFLSFKQSQLQNEQQREETNNRTDlpLSRKeFIKLSNKYVLIFKIMEIFALSLYSS--S 1304
                  5555555544444444444333...333344444444444444444444444443333333200233323334455555556666555444433..4 PP

      Nup188  204 keevekwfkllket 217 
                  +++++k f+ll+++
  CCD24856.1 1305 NSTTSKVFQLLNRK 1318
                  56666666666655 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.018
      Nup188  794 gqlydqliqlslslanllisirssln...lspSplEkaLfsqspkLVdvyasyeslkkd........iikLLtsLv 858 
                   ++ ++ ++l lsl+++l+s++++ +   l +S+l  + +++   + +vy+s  ++k +        ++  +tsL 
  CCD24856.1 1594 FEKRKHSLNLLLSLFKTLVSLKPTEHfnmLLASSLNDMGTIK--VILNVYSSADYYKSKddptigtiVLPYITSLC 1667
                  445566777788888888888888887665577777765555..67788877777776655666655555555554 PP

>> Nup188_C  Nuclear pore protein NUP188 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.7   2.9e-20   2.6e-16      99     345 ..    1601    1857 ..    1594    1874 .. 0.87

  Alignments for each domain:
  == domain 1  score: 59.4 bits;  conditional E-value: 2.9e-20
                  HHHHHHHHHHHCCSCCCCCSHHHHHHHHHHTTCHHHHHHHHHHCCGG-TTSS-HHHHHHHHHHHHHCTSHHHHHHHHHCTHHHHHHCSCHHHHCTST CS
    Nup188_C   99 lalltaiLqaclavpgieqlqeqilnilasndtvrvatsLfSWsdklavegDPvYGeLsilfLleLSslpalAEqlAvdgvLsqlssanltkylrre 195 
                  l ll +++++ ++++  e+++  +++ l + +t++v +  +S +d    ++DP  G + + ++ +L s+p +AE++  +g+++ l    l+k+l++ 
  CCD24856.1 1601 LNLLLSLFKTLVSLKPTEHFNMLLASSLNDMGTIKVILNVYSSADYYKSKDDPTIGTIVLPYITSLCSVPPIAEKFITNGMFTILLESPLSKVLQQG 1697
                  78999******************************************************************************************** PP

                  T--SS-S-HCCHHHHHHHHCTHHHHHHHHHCCTTTSSHHHHHHHHCT-HHHHHCCCCTT-----------------B-SHHHHHHHHHHHHHHHHHH CS
    Nup188_C  196 kvspfdeaavaqRlysiWakgiLPLlLNlLtavgatvApEvaafLnqFpelLkrsverleapeasrtssskeakkkitllaasEvhsLalltrilea 292 
                   + p  e+     l+s+W++g+L ++  lL   g+ v pE   f+  F++++k+++  ++ +  +r          i+ ++++E+  L l++ +l+ 
  CCD24856.1 1698 FIRPRLEPK----LHSLWSNGLLVIIQILLRDFGSRVLPECCLFISYFSKQIKSTI--FSWSDNNRLV--------ISTSLLNETWQLVLIQKMLDD 1780
                  999988877....***************************************8765..6666666666........88999***************9 PP

                  HHT......................T-SS-----..---HHHHHHHHHHHHT-HHHHHHHB---SHHHHHHHHS--- CS
    Nup188_C  293 lre......................vnardipev..ewdaasvkedvefwlssrklLrerlvplgerelelarkkae 345 
                  l                        ++ + ++ +  +++++ +   ++++l++ + L +r+++    e +l   +++
  CCD24856.1 1781 LNYkkylgenlsnendvgttvsetdKTFELVSGLdyQYERRDLYAVLNKLLTHPRYLNSRIISSTVEEQQLLDDEST 1857
                  98778999999999999999877653344455442256788899999999999999999999998888888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1881 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1061  (0.0591779); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.27s 00:00:01.29 Elapsed: 00:00:00.45
# Mc/sec: 12599.20
//
Query:       CCD24857.1  [L=596]
Description: hypothetical protein NDAI_0E00410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-19   70.0   9.0    0.00039   21.2   0.0    6.3  5  WD40         WD domain, G-beta repeat
      1e-13   51.4   0.2      0.003   17.8   0.0    5.4  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    9.4e-07   28.1   0.2       0.48    9.3   0.1    3.3  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
    0.00018   21.5   3.1       0.13   12.2   0.2    3.9  3  eIF2A        Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
       0.12   12.5   0.0        1.2    9.2   0.0    2.5  2  BBS2_Mid     Ciliary BBSome complex subunit 2, middle region


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.2    0.0024       8.5      10      38 .]      11      64 ..       4      64 .. 0.69
   2 !   21.2   0.0   1.1e-07   0.00039       4      38 .]      91     126 ..      88     126 .. 0.92
   3 !   21.0   0.1   1.3e-07   0.00045      10      37 ..     188     217 ..     180     218 .. 0.82
   4 !   11.5   0.0   0.00012      0.43       3      37 ..     233     268 ..     231     269 .. 0.87
   5 !    8.6   0.2     0.001       3.7      10      33 ..     458     482 ..     451     484 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0024
                S..SSEEEEEEETTSSE........................EEEEETTSEEEEEE CS
        WD40 10 H..ssvtslafspdgaw........................lasGsdDgtvriWd 38
                H  ++v+sl+f p + +                        +++G+ D+++r W+
  CCD24857.1 11 HesQPVYSLCFEPPSLYssssssssssatnaidqkklgmrlITAGG-DNKIRSWS 64
                7644599999666666665555566667777788888888555678.*****995 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 1.1e-07
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l +lt H + ++ ++f+p g+ las++dDg v +W+
  CCD24857.1  91 LSSLTQHeQAINVVKFNPLGNILASAGDDGQVLLWK 126
                 7899***888*************************6 PP

  == domain 3  score: 21.0 bits;  conditional E-value: 1.3e-07
                 S..SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  10 H..ssvtslafspdgawlasGsdDgtvriW 37 
                    s +++l++sp g++++ Gs+D+ +ri+
  CCD24857.1 188 SntSEIYDLDWSPCGNYIVIGSMDNCIRIF 217
                 32344***********************97 PP

  == domain 4  score: 11.5 bits;  conditional E-value: 0.00012
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriW 37 
                 ++ ++  H++ v ++ ++p +++++s s D++v i+
  CCD24857.1 233 QIFSFNDHNHyVQGVVWDPMNQYILSQSADRSVNIY 268
                 56788899888**************7688****998 PP

  == domain 5  score: 8.6 bits;  conditional E-value: 0.001
                 S.SSEEEEEEETTSSEEEEEETTSE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgt 33 
                 H +  t+l++s+dg++l+ +s Dg 
  CCD24857.1 458 HyTALTDLSWSSDGTMLMISSTDGF 482
                 55668***********987777996 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.25   8.8e+02      33      86 ..      31      84 ..       2      93 .. 0.69
   2 !    9.8   0.0   0.00026      0.94      32      65 ..      88     125 ..      78     134 .. 0.80
   3 !   17.8   0.0   8.5e-07     0.003      29      71 ..     179     223 ..     172     231 .. 0.88
   4 ?    4.5   0.0     0.012        44      28      67 ..     233     270 ..     227     289 .. 0.75
   5 !   11.5   0.0   7.6e-05      0.27      39      72 ..     460     493 ..     429     514 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.25
  ANAPC4_WD40 33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86
                 ++++++s  +++  k+ g  L  a  d+++r  + +  +   +++ + +++v++
   CCD24857.1 31 SSSSSSSATNAIDQKKLGMRLITAGGDNKIRSWSLNMSDSDLNFDSEPKTQVQK 84
                 4455566667888899999999999****9999888777766666666665554 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00026
  ANAPC4_WD40  32 l....eedkedsevrsLaWkpdgklLavaysdgevrll 65 
                  +    + +++++ ++ ++++p g++La a +dg+v l 
   CCD24857.1  88 IdflsSLTQHEQAINVVKFNPLGNILASAGDDGQVLLW 125
                  4555455788999*********************9876 PP

  == domain 3  score: 17.8 bits;  conditional E-value: 8.5e-07
  ANAPC4_WD40  29 vwtl..eedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  +w+   ++ ++ se+ +L W+p g+ ++++  d+ +r++++ + k
   CCD24857.1 179 IWKRlrPNGSNTSEIYDLDWSPCGNYIVIGSMDNCIRIFQITKNK 223
                  677777788999***************************998876 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.012
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpdgklLavaysdgevrllda 67 
                  +++++  +++++ v+++ W p ++ +    +d +v++++ 
   CCD24857.1 233 QIFSF--NDHNHYVQGVVWDPMNQYILSQSADRSVNIYQL 270
                  67777..678888999999999999999999999988875 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 7.6e-05
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                     ++L+W+ dg++L+++  dg ++ +++  +k 
   CCD24857.1 460 TALTDLSWSSDGTMLMISSTDGFCSYISIDAEKY 493
                  56799********************999988776 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1   0.00013      0.48     144     221 ..      49     132 ..      29     142 .. 0.70
   2 !    6.1   0.0    0.0013       4.5     186     224 ..     189     227 ..     183     233 .. 0.88
   3 !    8.5   0.0   0.00023      0.83     186     216 ..     458     488 ..     431     494 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00013
    Ge1_WD40 144 skllvltrgdkaeiwsvdmiaskygs...gelsveeiee..gllkieehs.liveaafspdGtalatasedGevkffqvylede 221
                  +l+     +k+  ws++m  s+ +     +++v++i++   l  +++h   i    f p G  la a  dG+v +++ +++d+
  CCD24857.1  49 MRLITAGGDNKIRSWSLNMSDSDLNFdsePKTQVQKINSidFLSSLTQHEqAINVVKFNPLGNILASAGDDGQVLLWKRHINDD 132
                 45555556678999***999986543223456666666542445677886589999*******************999887765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0013
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqvyledeeep 224
                 ++s+i +  +sp G  + + s+d  ++ fq+  ++++e 
  CCD24857.1 189 NTSEIYDLDWSPCGNYIVIGSMDNCIRIFQITKNKNDES 227
                 578999999**********************99887765 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00023
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqv 216
                 + + +++ ++s+dGt l ++s+dG+  +  +
  CCD24857.1 458 HYTALTDLSWSSDGTMLMISSTDGFCSYISI 488
                 34689999****************9887655 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.012        44      98     119 ..      96     117 ..      78     138 .. 0.80
   2 !   12.2   0.2   3.5e-05      0.13      58     116 ..     189     257 ..     184     260 .. 0.72
   3 ?    2.5   0.0     0.032   1.1e+02     127     163 ..     440     479 ..     435     482 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.012
                 EEEES--EEEE-TTSSEEEEE- CS
       eIF2A  98 leeqkrNtiffspkgklvllaG 119
                  +eq+ N ++f+p g++++ aG
  CCD24857.1  96 QHEQAINVVKFNPLGNILASAG 117
                 467889************9998 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 3.5e-05
                 SSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS..........CEEEEEEEEES..--EEEE-TTSSEEE CS
       eIF2A  58 kegpihdvaWspkskefaviyGkmpakvslfdlk..........vkviskleeqk..rNtiffspkgklvl 116
                 ++ +i+d+ Wsp ++  +++ G m++++ +f+ +           ++i++++ ++     ++++p ++++l
  CCD24857.1 189 NTSEIYDLDWSPCGN--YIVIGSMDNCIRIFQITknkndessflNNQIFSFNDHNhyVQGVVWDPMNQYIL 257
                 5678**********9..5677***********964455666666666777665441145577777777765 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.032
                 EEEEETT...TTEEEEEEE-TT--EEEE-TTSSEEEEEE- CS
       eIF2A 127 leiwdvk...kkkkiakaeaanatlvewspdgryvlTatt 163
                 + i+d++    ++ i +++ +  t++ ws dg++++ ++t
  CCD24857.1 440 ILIYDTEsiePISIIGNLHYTALTDLSWSSDGTMLMISST 479
                 6678887332334556677778889999999999988776 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.36   1.3e+03      13      56 ..      49      93 ..      40      96 .. 0.69
   2 ?    9.2   0.0   0.00034       1.2      13      30 ..     203     220 ..     194     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.36
    BBS2_Mid 13 neLvvgsddfeirvfkeeelvaeitetekv.vslarlekerfaya 56
                  L+ +  d++ir ++ +   ++++  +++ +++ ++++ +f+ +
  CCD24857.1 49 MRLITAGGDNKIRSWSLNMSDSDLNFDSEPkTQVQKINSIDFLSS 93
                57999999*****99887777777665554255666666666655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00034
    BBS2_Mid  13 neLvvgsddfeirvfkee 30 
                 n++v+gs d++ir+f+  
  CCD24857.1 203 NYIVIGSMDNCIRIFQIT 220
                 89*************855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 4094.09
//
Query:       CCD24858.1  [L=206]
Description: hypothetical protein NDAI_0E00420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-11   42.6   0.0    6.2e-11   41.8   0.0    1.4  1  CUE          CUE domain
  ------ inclusion threshold ------
        0.1   12.9   1.1       0.17   12.2   0.3    1.8  2  Sigma_reg_N  Sigma factor regulator N-terminal
       0.11   12.9   0.2       0.11   12.9   0.2    1.9  2  DUF4969      Domain of unknown function (DUF4969)
       0.17   11.8  19.2       0.21   11.5  19.2    1.1  1  TFIIA        Transcription factor IIA, alpha/beta subunit
        5.3    8.1   9.7        1.1   10.2   1.5    2.2  2  DUF4834      Domain of unknown function (DUF4834)


Domain annotation for each model (and alignments):
>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   1.7e-14   6.2e-11       1      41 [.      92     131 ..      92     132 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 1.7e-14
                 CHHHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHC CS
         CUE   1 reqmletLkemFPdldeevIravLrasngnvEatinaLLeg 41 
                 +++m+e + +m P+ld e+I+++L +++g++E ti++ L g
  CCD24858.1  92 NDDMIEVVATMAPSLDYEQIKFDL-QKTGSIEKTIENFLRG 131
                 689*********************.************9976 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   4.8e-05      0.17      13      53 ..       6      46 ..       5      50 .. 0.86
   2 ?   -3.4   0.0       3.6   1.3e+04      72      85 ..     111     125 ..     105     127 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.8e-05
  Sigma_reg_N 13 lrivlislivlllifvilvvtllylaekegnklrevlelav 53
                 l +++i++i+ +++ +il++++++ +++++n+ ++++e+++
   CCD24858.1  6 LDNSTIIFITSIILGFILIKWFNMKNSNNNNDDESYAEMTM 46
                 56889999999999999999999999999999888888887 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.6
  Sigma_reg_N  72 f.fggeieyelskqv 85 
                  + f  + +  + k++
   CCD24858.1 111 IkFDLQKTGSIEKTI 125
                  336666666666666 PP

>> DUF4969  Domain of unknown function (DUF4969)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   3.1e-05      0.11       8      62 ..      14      72 ..       9      88 .. 0.72
   2 ?   -2.3   0.7       1.6   5.9e+03      52      56 ..     169     173 ..     138     191 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.1e-05
     DUF4969  8 LvsvLvlFil...lavaCs.dsedneesveiilkeielsvddpiklvdengeatvevdv 62
                ++s+++ Fil   + +  s + +d+e ++e+ + ei  ++    k+ d +++ t+  d 
  CCD24858.1 14 ITSIILGFILikwFNMKNSnNNNDDESYAEMTMTEIKETITTFNKPKDSDEKQTITNDD 72
                555555555511133333303466799*************************9998764 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
     DUF4969  52 engea 56 
                 e +e+
  CCD24858.1 169 EEDET 173
                 33333 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  19.2     6e-05      0.21     244     358 ..      57     205 ..      25     206 .] 0.44

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6e-05
       TFIIA 244 dgaedaleeespvlegelsaeeeagaqkeelsreeidrireealkakelekeskkkkraeessla.................................. 308
                 ++++d++e+++   + +++a + +++ ++  +r+  d++                                                            
  CCD24858.1  57 NKPKDSDEKQTITNDDQKEAPQMKKKGNRFQKRMVNDDM-------------------------Ievvatmapsldyeqikfdlqktgsiektienflr 130
                 111111111111111111111111111111122222222.........................02333334444444444444444455555556666 PP

       TFIIA 309 ....................dlseilqlDGagddsdeeeeeeesdedsdsessdd.edeq....veEDplNSdDD 358
                                      +s+ l lDG +dd+ +eee+e+  ed+ ++++dd ede+    +++D  NS DD
  CCD24858.1 131 gddfpfpekkesniqigekkVDSSNLELDGLDDDDYNEEEDETYREDTMNDEEDDeEDEDysqfADDDTNNSYDD 205
                 666666665555666666556778889999999999988888888885555555534444668777777777787 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.5   0.00032       1.1      14      83 ..      11      82 ..       9      93 .. 0.50
   2 ?    2.5   1.5     0.082   2.9e+02      57      88 ..     167     197 ..     117     205 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00032
     DUF4834 14 ilviglsilsvilrtvfglgsrkkss..ksaqkqfgnstnsnqqksqsrsetkeegeiieeersekeakrkk 83
                i++i  +il++il + f + + ++++  +s+++ + ++ +++ +  ++ + ++e+++i++++++e ++ +kk
  CCD24858.1 11 IIFITSIILGFILIKWFNMKNSNNNNddESYAEMTMTEIKETITTFNKPKDSDEKQTITNDDQKEAPQMKKK 82
                566677777777777777444433332244444444444444333334444455555555555544443333 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.082
     DUF4834  57 sqsrsetkeegeiieeersekeakrkkiFekd 88 
                 ++++ et++e+++++ee++e+ +     F++d
  CCD24858.1 167 NEEEDETYREDTMNDEEDDEEDEDY-SQFADD 197
                 2244445555555555555443332.335555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2222  (0.123933); expected 358.6 (0.02)
Passed bias filter:                      697  (0.0388756); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1431.75
//
Query:       CCD24859.1  [L=1198]
Description: hypothetical protein NDAI_0E00430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-165  551.9   1.8   1.1e-165  551.9   1.8    1.8  2  Glyco_transf_20  Glycosyltransferase family 20
    6.3e-43  146.6   0.1    2.2e-42  144.8   0.0    1.9  2  Trehalose_PPase  Trehalose-phosphatase
  ------ inclusion threshold ------
       0.43   10.7   6.4       0.87    9.7   0.2    2.8  2  SUIM_assoc       Unstructured region C-term to UIM in Ataxin3


Domain annotation for each model (and alignments):
>> Glyco_transf_20  Glycosyltransferase family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  551.9   1.8  1.8e-169  1.1e-165       6     473 ..     433     905 ..     428     906 .. 0.96
   2 ?   -2.2   0.1      0.21   1.3e+03      93     153 ..    1029    1085 ..    1001    1093 .. 0.66

  Alignments for each domain:
  == domain 1  score: 551.9 bits;  conditional E-value: 1.8e-169
                      EEEE-SEC....EEE-S...SCG..EEECCGSSHHHHHCCCHHCC.......C-EEEEEEECCES-CCC...HCCCCHHHCCCCCEEEEEE-HH CS
  Glyco_transf_20   6 vsnrlplk....leres..eeekeeyelkkssgglvsalkglkee.......tevvwvgwlgvevdesee.akekvskeleekfsvvpvflsde 85 
                      +sn+ +l+    ++  s     +  +++  +++g+  ++++++++       + v wvg++g+++de ++   +k+sk+l++++++++v+++d 
       CCD24859.1 433 FSNNAKLRaqllSS--SheLFRNLPWKIALNDKGNGAMKNAINTAiieetikEPVSWVGTVGIPTDEIPDeITAKISKTLQDEYQSTAVVTDDI 524
                      56666666443222..234688999******************999998885556*************99999********************* PP

                      HHHHHCCCHHHHCHHHHHTT-GG....G----HHHHHHHHHHHHHHHHHHHCC--TT-EEEEESGGGTTHHHHHHHCCTTSEEEEEE-S----H CS
  Glyco_transf_20  86 kveeyyngfsksvLWpllHYklpdsseekefersawdaYvkvnklFAdkiveeikdgdliwvhDYhLmllPellRkkledakigfflHiPFPss 179
                      +++ +y++f+k++LWp+lHY++pd++++k+fe+++w+ Y+k+n+ FAd+i++++k gd+iwvhDYhLml+Pel+Rk l++akigf lH++FPss
       CCD24859.1 525 TFKGAYKNFCKQILWPTLHYQIPDNPNSKAFEDHSWNYYQKLNQQFADQIIKIYKIGDTIWVHDYHLMLVPELVRKVLPNAKIGFSLHVSFPSS 618
                      ********************************************************************************************** PP

                      HHHTTSTTHHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHSSEEEECTTEEEEETTEEEEEEE------HHHHHHHCCSCHHHHHHHHHHHHT. CS
  Glyco_transf_20 180 eifriLpvreeilegllgadliGFhtedyarhFlsccsrllgleveskrggveykgrkvsvkalpigidverlesalkkesvsekvkelkerfe 273
                      e+fr+++ re+il+g+lg++++GF+t++yarhFl++++rll+++v  +  +++++g+ vsvk++p+gid+ +l+++lk+e v ++ + ++er+e
       CCD24859.1 619 EVFRCFAHREKILKGILGSNFVGFQTKEYARHFLQTSNRLLMADVGTD--ELKFNGKIVSVKYTPVGIDTFTLNDQLKDERVFQWRHLIRERWE 710
                      ************************************************..79*****************************************9 PP

                      TTSEEEEEEEEC-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEEEEB-STTSHHHHHHHHHHHHHHHHHHHHH-BTT.B-SEEEEES---HHHH CS
  Glyco_transf_20 274 nkkklilgvDrlDyikGvkqkllaferfLeeypelrgkvvlvqiavpsredveeyqelekeveelvgrINgefgtld.ytPvvylersldfeel 366
                      +k +li+++D++D+i+G+++k+laferfL+e+pe+++kvvl+qi++ +++d e    le++++ +v+rIN+  ++++  +Pvv+l+++l+f ++
       CCD24859.1 711 GK-RLIVCRDQFDRIRGLHKKMLAFERFLKENPEYIEKVVLLQICIGKSSDSE----LERQIMMVVDRINSLSSNISiSQPVVFLHQDLEFVQY 799
                      96.*************************************************9....********************99*************** PP

                      HHHHHH-SEEEE--SSBSS-CHHHHHHHCSTTT--EEEEETTBGGGGT-TTTSEEE-TT-HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHT- CS
  Glyco_transf_20 367 iallaaadvllvtslRdGmnlvakeyvvcqqekkgvLiLSeFaGaaqsLkdaailvNPwdieevaeaikeaLkmseeerkkrekkllkqvskhd 460
                      +al ++ad++lv+slR+Gmnl+++e++v ++ek+++L+LSeF+G+a++ k +a+l+NPwdi + a+ ik++L+ms+ee+++ +kk++k+v+++d
       CCD24859.1 800 LALSCEADMFLVNSLREGMNLTCHEFIVSSEEKNAPLLLSEFTGSASVVK-GALLINPWDIRHSANCIKQGLEMSKEEKRRHWKKMMKSVIEND 892
                      **************************************************.88***************************************** PP

                      HHHHHHHHHHHHH CS
  Glyco_transf_20 461 vqsWaesflselk 473
                      +++W+ s l++++
       CCD24859.1 893 SDNWILSSLQNIH 905
                      *******999986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.21
                       CHHHHCHHHHHTT-GG....G----HHHHHHHHHHHHHHHHHHHCC--TT-EEEEESGGGT CS
  Glyco_transf_20   93 gfsksvLWpllHYklpdsseekefersawdaYvkvnklFAdkiveeikdgdliwvhDYhLm 153 
                       + ++s+++  +H  +++ ++++++ +   da +++n lF ++ ++ + + ++++v+   L 
       CCD24859.1 1029 KVADSMIR--FH--TENAEDQERVASVIGDAITHINTLFDERGIHAYVHKNIVFVQETGLS 1085
                       55555554..34..44456666777777777788888888888888888888887765555 PP

>> Trehalose_PPase  Trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.32   1.9e+03     162     192 ..     727     759 ..     710     763 .. 0.72
   2 !  144.8   0.0   3.7e-46   2.2e-42       2     222 ..     927    1138 ..     926    1148 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.32
                      --.HHHHHHHHHHTS---.-----EEEEEE-SS CS
  Trehalose_PPase 162 vs.KGkaverlleslgsa.dseddfvlciGDdr 192
                      +  K  a er+l+++++  ++   + +ciG   
       CCD24859.1 727 LHkKMLAFERFLKENPEYiEKVVLLQICIGKSS 759
                      4449999*******9988788888889999655 PP

  == domain 2  score: 144.8 bits;  conditional E-value: 3.7e-46
                       EETBTTTB---SSGGG--B-TTHHHHHHHHHTTS-..EEEE-SS-HHHHHHHH---SSEEEEGGGTEEE-TT--EEE-HHHHTTHHHHHHHH CS
  Trehalose_PPase    2 lDydGTlspivedpdaavpssellslLkkLasdpknvvaivSGrslkeeellvkvpelglaaeHGaeirspsgedwenqaevedlewlkevk 93  
                       +Dy+ + ++++ ++++++p++++ls+L++L+s+ ++v +++S+++++ e+l+++v ++gl+ae+Ga++r +++  w+n  +v++++w++ev 
       CCD24859.1  927 TDYKKSEKHMFIFKISEPPTPRMLSILNDLSSK-NIVFIMNSFSKVTLESLYNRVLNIGLIAENGAYVRLNGS--WYN--IVQQVDWKSEVV 1013
                       6999999**************************.889999*********************************..***..************ PP

                       HHHHHHHTTSTT-EEEEETTEEEEE-TT--TT....THHHHHHHHHHHHHHH.--EEEE-SSEEEEE-S---HHHHHHHHHHTS---.---- CS
  Trehalose_PPase   94 eileektertpGsyiEekkfalsvHyrnadde..elqakelaehlesvltdkpdlevtqgkkvvevrpqgvsKGkaverlleslgsa.dsed 182 
                       +i+++k+er+pGsy++  ++++++H++na+d+  ++++++ a++++++l+d+++++++++k++v v+ +g+s ++av++ll++++++  + d
       CCD24859.1 1014 KIFDDKVERLPGSYYKVADSMIRFHTENAEDQerVASVIGDAITHINTLFDERGIHAYVHKNIVFVQETGLS-LAAVQFLLKFYNNTsHPFD 1104
                       ************************************************************************.************9854555 PP

                       -EEEEEE-SSTTHHHHTTS-TT...-EEEEE--TTS---E CS
  Trehalose_PPase  183 dfvlciGDdrtDedmFsvlrktkesgvsievsavevgskp 222 
                       +++++++    +e+ F++  +    + +i++  v+++s+p
       CCD24859.1 1105 NSSIAVT---QSENTFTQNGNG---QSQIDFMMVTGSSSP 1138
                       5665553...367777665554...666666666666665 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   0.00015      0.87      30      44 ..      94     108 ..      39     116 .. 0.67
   2 ?    2.4   1.6     0.028   1.6e+02      29      61 ..     282     314 ..     276     316 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00015
  SUIM_assoc  30 qeqqqqqqqqqqdpp 44 
                 q++qqqqqqqq  p+
  CCD24859.1  94 QHHQQQQQQQQPIPS 108
                 677777777776665 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.028
  SUIM_assoc  29 KqeqqqqqqqqqqdppgqlshprekpttSsgal 61 
                 Kq++qqq       + + +++++  ++tS  a 
  CCD24859.1 282 KQKHQQQSNLPSMRRMQSTPNVHTSSSTSTTAA 314
                 334444444445556677788888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1167  (0.0650901); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 8073.75
//
Query:       CCD24860.1  [L=416]
Description: hypothetical protein NDAI_0E00440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-09   37.6   7.5    1.5e-09   37.6   7.5    2.4  2  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
    4.6e-09   36.0  13.0    6.7e-09   35.5   4.5    2.3  2  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
    7.6e-09   35.6   8.8    7.6e-09   35.6   8.8    2.3  2  zf-C3HC4_4     zinc finger of C3HC4-type, RING
    9.1e-08   32.3   7.6    9.1e-08   32.3   7.6    2.4  2  zf-RING_2      Ring finger domain
    1.6e-07   31.0   8.4    1.6e-07   31.0   8.4    2.2  2  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
      3e-07   30.4   7.2      3e-07   30.4   7.2    2.2  2  zf-RING_UBOX   RING-type zinc-finger
    3.8e-06   26.8   7.2    3.8e-06   26.8   7.2    2.6  2  zf-RING_5      zinc-RING finger domain
    1.8e-05   24.5   5.4    1.8e-05   24.5   5.4    2.5  2  Prok-RING_4    Prokaryotic RING finger family 4
       0.01   15.9   2.4       0.01   15.9   2.4    2.1  2  zf-ANAPC11     Anaphase-promoting complex subunit 11 RING-H2 
  ------ inclusion threshold ------
      0.018   15.3   6.3      0.018   15.3   6.3    2.5  2  zf-rbx1        RING-H2 zinc finger domain
      0.022   14.8   2.5      0.022   14.8   2.5    3.2  3  zf-ACC         Acetyl-coA carboxylase zinc finger domain
      0.029   14.1  14.5       0.14   11.9   6.5    3.0  2  zf-RING_4      RING/Ubox like zinc-binding domain
      0.045   14.6   0.1       0.79   10.6   0.0    2.8  2  DHC            Dihaem cytochrome c
       0.27   11.5  13.7        2.2    8.6   1.3    3.3  2  zinc_ribbon_9  zinc-ribbon
       0.28   11.1   5.1       0.11   12.4   2.1    1.9  2  zf-RING_6      zf-RING of BARD1-type protein
       0.33   11.0  10.7        2.3    8.3   1.1    2.8  2  DZR            Double zinc ribbon
       0.54   10.3   8.3       0.89    9.6   0.5    2.5  2  HypA           Hydrogenase/urease nickel incorporation, metal
        2.1    8.0   5.6        8.4    6.1   0.3    2.7  2  MCR            Magnetochrome domain
        2.2    8.5   6.1        8.7    6.6   1.0    3.9  3  zf-RING_7      C4-type zinc ribbon domain
        2.8    8.1   8.5        2.2    8.5   1.1    2.9  2  Zn-ribbon_8    Zinc ribbon domain
        4.1    7.6   8.0       0.77    9.9   2.8    2.3  2  zf-RING_10     zinc RING finger of MSL2


Domain annotation for each model (and alignments):
>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   7.5   1.7e-12   1.5e-09       1      41 []      30      70 ..      30      70 .. 0.98
   2 ?    0.6   1.2      0.64   5.4e+02      22      41 .]     154     176 ..     153     188 .. 0.75

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.7e-12
                -TTT-S--SS-E.E-TTS--B-CHHHHHHHHC.TSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepnelleCkHsfCskCirkilks.rkkvkCPlC 41
                C+iC +++  p+ +++C+H+fC+ C+ +++   +k  +CP+C
  CCD24860.1 30 CSICHDYMFVPM-MTPCGHNFCYGCLNNWITGgSKDLNCPQC 70
                ************.******************9999999**** PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.64
                 -CHHHHHHHHC...TSSB--TTT CS
    zf-C3HC4  22 CskCirkilks...rkkvkCPlC 41 
                 Cs+C  +i  +   ++ + CP C
  CCD24860.1 154 CSNCHWEIDPDdleDNDNVCPHC 176
                 67776666655676666669988 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   4.5   7.8e-12   6.7e-09       2      49 ..      27      76 ..      26      77 .. 0.94
   2 ?    5.5   1.3     0.019        16      26      48 ..     154     181 ..     152     183 .. 0.81

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 7.8e-12
                GSB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH...TT-B-TTT--B--E CS
  zf-C3HC4_3  2 deeCviClerprnvvllpCgHlvlCeeCaekllk...rkkkCpiCrrpiek 49
                +  C+iC++     ++ pCgH  +C+ C++++     ++ +Cp Cr+ i++
  CCD24860.1 27 SLNCSICHDYMFVPMMTPCGHN-FCYGCLNNWITggsKDLNCPQCRSTINE 76
                568*******************.**********999999********9986 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.019
                 -HHHHHHHHH.....TT-B-TTT--B-- CS
  zf-C3HC4_3  26 CeeCaekllk.....rkkkCpiCrrpie 48 
                 C++C  ++       +++ Cp C+  i+
  CCD24860.1 154 CSNCHWEIDPddledNDNVCPHCNMRIR 181
                 88888777547777899*******9997 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   8.8   8.9e-12   7.6e-09       1      42 []      30      70 ..      30      70 .. 0.96
   2 ?   -0.4   0.7       1.5   1.3e+03      32      42 .]     166     176 ..     150     178 .. 0.58

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 8.9e-12
  zf-C3HC4_4  1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeqllCplC 42
                C iC dY+  P+  +CGh+fC  C++++    ++ +l Cp+C
  CCD24860.1 30 CSICHDYMFVPMMTPCGHNFCYGCLNNWITGGSK-DLNCPQC 70
                9****************************99977.5****** PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.5
  zf-C3HC4_4  32 pdgeqllCplC 42 
                  ++++  Cp C
  CCD24860.1 166 LEDNDNVCPHC 176
                 34445678877 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   7.6   1.1e-10   9.1e-08       2      44 .]      29      71 ..      28      71 .. 0.83
   2 ?    0.6   1.8      0.88   7.5e+02      34      43 ..     166     176 ..     149     177 .. 0.55

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.1e-10
   zf-RING_2  2 eCpICleelssadsvlllpCgHvfhreClerwlrssst...CPlCr 44
                +C+IC + +     ++ +pCgH f++ Cl++w++  s+   CP Cr
  CCD24860.1 29 NCSICHDYM---FVPMMTPCGHNFCYGCLNNWITGGSKdlnCPQCR 71
                6****7666...3344558*************9888888******9 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.88
   zf-RING_2  34 lrssst.CPlC 43 
                 l+ + + CP C
  CCD24860.1 166 LEDNDNvCPHC 176
                 44444469999 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   8.4   1.9e-10   1.6e-07       1      40 []      29      70 ..      29      70 .. 0.89
   2 ?   -0.7   2.0       1.6   1.3e+03      30      40 .]     165     176 ..     153     176 .. 0.68

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 1.9e-10
  zf-C3HC4_2  1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLe..ekn.eCPlC 40
                +C iC d +  p ++tpCgH fC+ C+  +++  +k+ +CP+C
  CCD24860.1 29 NCSICHDYMFVP-MMTPCGHNFCYGCLNNWITggSKDlNCPQC 70
                5***********.****************9973245589**** PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
  zf-C3HC4_2  30 sLeekn.eCPlC 40 
                  Le+++  CP C
  CCD24860.1 165 DLEDNDnVCPHC 176
                 57777779***9 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   7.2   3.5e-10     3e-07       1      39 []      30      68 ..      30      78 .. 0.86
   2 ?   -2.9   1.4       8.7   7.4e+03      21      39 .]     154     174 ..     154     177 .. 0.66

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 3.5e-10
  zf-RING_UBOX  1 CpIClelftdPlvlpCGHtFCreCl..welskslegafkCP 39
                  C+IC + +  P+++pCGH+FC  Cl  w    ++++ + CP
    CCD24860.1 30 CSICHDYMFVPMMTPCGHNFCYGCLnnW--ITGGSKDLNCP 68
                  ***********768***********655..55666666666 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 8.7
  zf-RING_UBOX  21 CreClw..elskslegafkCP 39 
                   C++C w  + ++ +++   CP
    CCD24860.1 154 CSNCHWeiDPDDLEDNDNVCP 174
                   888887666666666666666 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   7.2   4.4e-09   3.8e-06       1      43 [.      29      71 ..      29      72 .. 0.96
   2 ?    0.7   1.8       0.6   5.1e+02      33      43 ..     162     177 ..     153     178 .. 0.56

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 4.4e-09
   zf-RING_5  1 hCnkCfeklskeekfyltsCgHifCekClkkll...ekeavCpiCr 43
                +C++C++ +     +++t+CgH fC  Cl++      k+ +Cp+Cr
  CCD24860.1 29 NCSICHDYM---FVPMMTPCGHNFCYGCLNNWItggSKDLNCPQCR 71
                6*****999...9********************************9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.6
   zf-RING_5  33 l.....ekeavCpiCr 43 
                        +++vCp C+
  CCD24860.1 162 DpddleDNDNVCPHCN 177
                 3333556678888886 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   5.4   2.1e-08   1.8e-05       1      42 [.      30      76 ..      30      80 .. 0.87
   2 ?    3.1   1.4       0.1        87      29      42 ..     169     182 ..     151     187 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.1e-08
  Prok-RING_4  1 CvlCgeqekkailepCgHlvCkeCfdsk...dls...sCPlCqrrisk 42
                 C +C     ++++ pCgH +C  C++++     s    CP C++ i++
   CCD24860.1 30 CSICHDYMFVPMMTPCGHNFCYGCLNNWitgG-SkdlNCPQCRSTINE 76
                 9***************************7651.14668******9986 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.1
  Prok-RING_4  29 dlssCPlCqrrisk 42 
                  + + CP C+ ri +
   CCD24860.1 169 NDNVCPHCNMRIRN 182
                  3449*****99965 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   2.4   1.2e-05      0.01      48      81 ..      41      74 ..      27      77 .. 0.82
   2 ?   -0.7   0.3       1.8   1.5e+03      21      29 ..     170     178 ..     152     187 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.2e-05
                EEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB- CS
  zf-ANAPC11 48 vlGkckhnfhlhcilkwletetskglcpmcrqtf 81
                ++  c hnf   c+ +w+   +   +cp cr t+
  CCD24860.1 41 MMTPCGHNFCYGCLNNWITGGSKDLNCPQCRSTI 74
                4567***************999999******986 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.8
                 SSB-TTT-S CS
  zf-ANAPC11  21 ddvcGicrv 29 
                 d+vc  c +
  CCD24860.1 170 DNVCPHCNM 178
                 455555544 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   6.3   2.1e-05     0.018      17      55 .]      30      71 ..      26      71 .. 0.79
   2 ?    0.2   0.1       1.1   9.7e+02      48      55 .]     170     177 ..     165     186 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.1e-05
     zf-rbx1 17 ckapgdeecpvvlGeCgHaFHlhCiskWlkt...rkvCPlcr 55
                c+  +d   ++++  CgH+F   C+++W++      +CP cr
  CCD24860.1 30 CSICHDYMFVPMMTPCGHNFCYGCLNNWITGgskDLNCPQCR 71
                55555555566778***************98876778****8 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.1
     zf-rbx1  48 rkvCPlcr 55 
                  +vCP c+
  CCD24860.1 170 DNVCPHCN 177
                 67899997 PP

>> zf-ACC  Acetyl-coA carboxylase zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1      0.12     1e+02       3      11 ..      66      74 ..      65      77 .. 0.83
   2 ?   -0.9   0.3       2.2   1.9e+03      12      19 ..     121     128 ..     121     129 .. 0.87
   3 ?   14.8   2.5   2.6e-05     0.022       4      26 .]     154     176 ..     153     176 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.12
      zf-ACC  3 KCpsCgeml 11
                +Cp+C +++
  CCD24860.1 66 NCPQCRSTI 74
                6****9988 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 2.2
      zf-ACC  12 ykkeLern 19 
                 ykk+L+++
  CCD24860.1 121 YKKDLDKD 128
                 9****986 PP

  == domain 3  score: 14.8 bits;  conditional E-value: 2.6e-05
      zf-ACC   4 CpsCgemlykkeLernlyVCPkC 26 
                 C  C + +   +Le+n +VCP+C
  CCD24860.1 154 CSNCHWEIDPDDLEDNDNVCPHC 176
                 88899999999************ PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   6.5   0.00017      0.14      19      45 ..      44      72 ..      30      74 .. 0.87
   2 ?    5.7   1.0     0.015        13      25      44 ..     154     177 ..     139     179 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00017
   zf-RING_4 19 eCgyqiClfCyhrile..eeegrCPaCre 45
                +Cg+++C  C+++ ++  +++  CP+Cr+
  CCD24860.1 44 PCGHNFCYGCLNNWITggSKDLNCPQCRS 72
                8*************99777899******7 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.015
   zf-RING_4  25 ClfCyhrile....eeegrCPaCr 44 
                 C  C+ +i      +++++CP C 
  CCD24860.1 154 CSNCHWEIDPddleDNDNVCPHCN 177
                 6666666644333378*******5 PP

>> DHC  Dihaem cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       1.5   1.3e+03     102     111 ..      26      35 ..       4      42 .. 0.73
   2 ?   10.6   0.0   0.00092      0.79      41     114 ..      85     162 ..      79     166 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1.5
                 STT-GGGT-T CS
         DHC 102 slsnCaaCHk 111
                 +  nC+ CH 
  CCD24860.1  26 ESLNCSICHD 35 
                 4567888886 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00092
                 HHHHHHHHHHHHHTSTTTTS-..-GGGTT-...TT---S-GGGSHHHHHHHCC--HHHHH..HHSSTT-GGGT-TTGG CS
         DHC  41 eatkkeiseyLeanaaekseak.kkilksl...keeiplritesryfkkkHkeveekvlkrkkvkslsnCaaCHkkae 114
                 ++t  +i e+L+++ + +++a+ kki++s     ++  + + + ++f++  k+ + +v+ + + + + +C++CH +++
  CCD24860.1  85 RETLDSIIEFLNEKKKVSRDAQfKKIMESKsmeLSKYKKDLDKDNLFESFFKNSAMAVVDEDDDEGIPRCSNCHWEID 162
                 6788899*****9999988888899998763134455668999*******************************8876 PP

>> zinc_ribbon_9  zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.3    0.0026       2.2       4      29 ..      49      72 ..      47      75 .. 0.79
   2 ?    7.1   4.4    0.0074       6.3       7      28 ..     156     177 ..     153     180 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0026
  zinc_ribbon_9  4 WChqCdrfVsvspdedsdvlCPhCgg 29
                   +C+ C +++      + d  CP+C++
     CCD24860.1 49 FCYGCLNNWITG--GSKDLNCPQCRS 72
                   9*****999875..445555****98 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0074
  zinc_ribbon_9   7 qCdrfVsvspdedsdvlCPhCg 28 
                    +C  ++++   ed+d +CPhC+
     CCD24860.1 156 NCHWEIDPDDLEDNDNVCPHCN 177
                    67766666666777767****8 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.1   0.00013      0.11       2      46 ..      22      70 ..      21      91 .. 0.82
   2 ?   -2.9   0.1       7.8   6.7e+03       9      13 ..     153     157 ..     149     161 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00013
   zf-RING_6  2 arlekllrcsrctdilrepvclggcehifcsncisdcfgsg.....cpvc 46
                 rl   l cs c d +  p+ +  c h fc  c+ + +  g     cp c
  CCD24860.1 22 LRLLESLNCSICHDYMFVPM-MTPCGHNFCYGCLNNWITGGskdlnCPQC 70
                5788889************7.689**********9987655334446666 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 7.8
   zf-RING_6   9 rcsrc 13 
                 rcs c
  CCD24860.1 153 RCSNC 157
                 55555 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   2.9     0.013        12       1      38 [.      30      74 ..      30      81 .. 0.72
   2 ?    8.3   1.1    0.0027       2.3       1      23 [.     154     181 ..     154     192 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.013
         DZR  1 CpqCgee......lppdarfCseCgtklkavaa.edrCpsCgekv 38
                C+ C+        +p + +fC+ C ++     +   +Cp+C + +
  CCD24860.1 30 CSICHDYmfvpmmTPCGHNFCYGCLNNWITGGSkDLNCPQCRSTI 74
                66666666666667778999****9996533335999****9875 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0027
         DZR   1 CpqCgee.....lppdarfCseCgtklk 23 
                 C++C+ e     l++++++C++C+ +++
  CCD24860.1 154 CSNCHWEidpddLEDNDNVCPHCNMRIR 181
                 9999988666666667789999998876 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   1.8     0.054        46      66      95 ..      43      73 ..       8      79 .. 0.69
   2 ?    9.6   0.5     0.001      0.89      61      95 ..     142     179 ..      75     198 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.054
                EE--EEEETTTS-EEECHHH.HHS-TTTSSS CS
        HypA 66 evpvkvrCreCgkefeleek.alrCpkCgsa 95
                +   +  C  C +++ +  + +l+Cp+C s+
  CCD24860.1 43 TPCGHNFCYGCLNNWITGGSkDLNCPQCRST 73
                4455678999**99997774589*****985 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.001
                 EEEEEEE--EEEETTTS-EEECHH..H.HHS-TTTSSS CS
        HypA  61 eLeieevpvkvrCreCgkefelee..k.alrCpkCgsa 95 
                 +++ ++ +   rC++C+ e++ ++  + +  Cp+C+ +
  CCD24860.1 142 VVDEDDDEGIPRCSNCHWEIDPDDleDnDNVCPHCNMR 179
                 444566677889*****99997766536779****975 PP

>> MCR  Magnetochrome domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.3    0.0099       8.4      17      25 ..      27      35 ..      26      37 .. 0.85
   2 ?    3.3   0.9     0.071        61      19      24 ..     153     158 ..     152     159 .. 0.93

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0099
                -S-GGGT-- CS
         MCR 17 nmnCtkCHq 25
                  nC+ CH+
  CCD24860.1 27 SLNCSICHD 35
                579*****8 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.071
                 -GGGT- CS
         MCR  19 nCtkCH 24 
                 +C++CH
  CCD24860.1 153 RCSNCH 158
                 7***** PP

>> zf-RING_7  C4-type zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.3         1   8.6e+02      25      29 ..      66      70 ..      62      72 .. 0.85
   2 ?    6.6   1.0      0.01       8.7       1      29 [.     153     176 ..     153     180 .. 0.82
   3 ?    1.2   0.6      0.51   4.3e+02      26      30 ..     173     177 ..     172     195 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 1
                E-TTT CS
   zf-RING_7 25 tCpeC 29
                 Cp+C
  CCD24860.1 66 NCPQC 70
                6**** PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.01
                 EETTT--B--CCHHHHHCCSTB-EE-TTT CS
   zf-RING_7   1 tCgGChmelppqvlselragdevvtCpeC 29 
                 +C+ Ch e++p +l + ++      Cp+C
  CCD24860.1 153 RCSNCHWEIDPDDLEDNDNV-----CPHC 176
                 7**********999876655.....6666 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.51
                 -TTT- CS
   zf-RING_7  26 CpeCG 30 
                 Cp+C+
  CCD24860.1 173 CPHCN 177
                 55554 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   1.2      0.16   1.4e+02      25      35 ..      63      73 ..      43      77 .. 0.64
   2 ?    8.5   1.1    0.0026       2.2       7      34 ..     153     178 ..     152     183 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.16
  Zn-ribbon_8 25 pltaCPeCgse 35
                 ++  CP+C s+
   CCD24860.1 63 KDLNCPQCRST 73
                 3455****985 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0026
  Zn-ribbon_8   7 rCeeCghefevlqsisdapltaCPeCgs 34 
                  rC +C+ e ++     ++++ +CP+C+ 
   CCD24860.1 153 RCSNCHWEIDPDDL--EDNDNVCPHCNM 178
                  899**988886553..788899****75 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.8    0.0009      0.77       1      45 [.      28      72 ..      28      85 .. 0.70
   2 ?   -0.7   0.2         2   1.7e+03      38      53 ..     152     170 ..     148     193 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0009
  zf-RING_10  1 lsCvvCckLLvdPlepkekeCqHyvCrlCv.....gkkkklkpsCsqCkd 45
                l C++C   +  P+    + C+H+ C +C+     g++k l  +C+qC++
  CCD24860.1 28 LNCSICHDYMFVPMM---TPCGHNFCYGCLnnwitGGSKDL--NCPQCRS 72
                689999999987765...58*********722222455555..4777764 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2
  zf-RING_10  38 psCsqCk...dyekyeenk 53 
                 p+Cs+C+   d ++ e+n 
  CCD24860.1 152 PRCSNCHweiDPDDLEDND 170
                 6666666544444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1799  (0.10034); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                       143  (0.0079759); expected 17.9 (0.001)
Passed Fwd filter:                        72  (0.00401584); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 1.15u 0.35s 00:00:01.50 Elapsed: 00:00:00.50
# Mc/sec: 2479.03
//
Query:       CCD24861.1  [L=398]
Description: hypothetical protein NDAI_0E00450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.042   13.9   0.9       0.13   12.4   0.3    2.1  2  ETRAMP    Malarial early transcribed membrane protein (ETRAMP
       0.19   12.7   2.0        6.2    7.9   1.6    2.5  2  NlpE      NlpE N-terminal domain


Domain annotation for each model (and alignments):
>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   1.4e-05      0.13      32      77 ..      86     161 ..      30     167 .. 0.71
   2 ?   -1.6   0.0      0.33     3e+03      27      35 ..     257     264 ..     246     308 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.4e-05
      ETRAMP  32 k...............................ekakkaikkiddkiekkkkkkKliiistiatalallvasalGlgi 77 
                 +                               + +  ai++i++ i+++ +k+++ + s i  +l  l+ + +Glg+
  CCD24861.1  86 QvdgkhfftkqgdvtenneksqlkhenpsheeDEKVMAINSIQEAIRQQRNKRRKQMASIIFMILSSLL-IGYGLGY 161
                 1555556666666666666667777777777788889************99999999888887775444.3333333 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.33
      ETRAMP  27 evnkkkeka 35 
                  +n+++ k+
  CCD24861.1 257 GNNNNN-KQ 264
                 333321.11 PP

>> NlpE  NlpE N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.6   0.00069       6.2      15      62 ..      68     117 ..      66     141 .. 0.72
   2 ?    2.2   0.0     0.041   3.6e+02      37      62 ..     360     385 ..     351     396 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00069
                 EEEEE-TTSEEEEEEEEESTT.-EEEEEEEEEEEETTTSEEEECE.---T CS
        NlpE  15 ttLtLnadgtyelseeylgks.ekefeekGkfswnekgsiltltp.eede 62 
                 t+L Ln +++ +++e+ ++ + ++ f+++G  + n+++s+l+ ++ +++e
  CCD24861.1  68 TKLRLNTNNNVRMHENNKQVDgKHFFTKQGDVTENNEKSQLKHENpSHEE 117
                 89**************999996689999***9965555555555443222 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.041
                 EEEEEEEEEEEETTTSEEEECE---T CS
        NlpE  37 kefeekGkfswnekgsiltltpeede 62 
                 + +  kGk++++ k + +tl  +e+ 
  CCD24861.1 360 SLVIYKGKYHVDVKMQEITLLRKENG 385
                 666789*****999999998864443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1600  (0.0892409); expected 358.6 (0.02)
Passed bias filter:                      736  (0.0410508); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3045.12
//
Query:       CCD24862.1  [L=59]
Description: hypothetical protein NDAI_0E00460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.22   11.5   2.6       0.28   11.2   2.6    1.5  1  SLATT_fungal  SMODS and SLOG-associating 2TM effector domain


Domain annotation for each model (and alignments):
>> SLATT_fungal  SMODS and SLOG-associating 2TM effector domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.6   1.6e-05      0.28      45      66 ..      37      58 ..       8      59 .] 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 1.6e-05
  SLATT_fungal 45 tqvaitvLGalnTviAglLArl 66
                   q a+t  G+++T+iAg++A++
    CCD24862.1 37 GQSAMTKAGIAGTIIAGVIAYM 58
                  46889999************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 476.69
//
Query:       CCD24863.1  [L=258]
Description: hypothetical protein NDAI_0E00470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-23   81.2   1.3    3.3e-13   49.3   0.0    2.3  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
     0.0043   17.1   0.2          3    8.0   0.1    2.5  2  RRM_7     RNA recognition motif
     0.0097   15.5   0.3      0.027   14.1   0.2    1.8  1  RRM_5     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
       0.14   12.4   0.9       0.32   11.2   0.9    1.6  1  VPS9      Vacuolar sorting protein 9 (VPS9) domain


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   7.3e-17   3.3e-13       1      62 [.      51     113 ..      51     122 .. 0.94
   2 !   30.9   0.2     4e-11   1.8e-07       1      69 [.     152     220 ..     152     221 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.3 bits;  conditional E-value: 7.3e-17
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngk 62 
                 ++Vgn+ p+vt+ +L+elF ++ pi++i  ++d   ++++g+af+eF ++ed +  ++ +n++
  CCD24863.1  51 VYVGNIDPNVTKAQLYELFVQVSPISKIAYPKDkLLQTHQGYAFIEFYTPEDTNYVVKVMNNT 113
                 8************************************************************95 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 4e-11
                 EEEESETTTSSHHHHHHHHHTTSCE.EEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpi.ksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fV+nL ++v+ ++L+ +F+kfGp  k+ ++++   +++ ++a + F+   d ++A+ +l+++ + ++++
  CCD24863.1 152 VFVKNLDESVDIQQLSNIFEKFGPLfKEPEIFY-LSNNTLRCAHIFFKFYPDSDAAIGKLDNELIANKRI 220
                 8***********************99*******.6*******************************9987 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1   0.00066         3       4      61 ..      51     101 ..      49     148 .. 0.64
   2 !    6.8   0.0    0.0016       7.3       2      29 ..     150     177 ..     149     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00066
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkv.lvdwPkkaeskkkaaenskaakgyvflvfedek 61 
                 v+vG + +++t+++l++ f + +++ ++ +Pk +  ++        ++gy+f+ f + +
  CCD24863.1  51 VYVGNIDPNVTKAQLYELFVQVSPIsKIAYPKDKLLQT--------HQGYAFIEFYTPE 101
                 99*****************9999873699998754432........3466666553322 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0016
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkvl 29 
                  kvFv  l   ++ ++l++ f++fg++ 
  CCD24863.1 150 AKVFVKNLDESVDIQQLSNIFEKFGPLF 177
                 59***********************985 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   6.1e-06     0.027      25     106 ..      45     133 ..      28     146 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6.1e-06
       RRM_5  25 egsVl..lVyglepdkvnldklFnlfclYgnverv.....kflktkketalvqmgdasaveravqHLnna.klfgkrlevalSKqqavse 106
                 +++ l   V +++p +v+  +l+ lf +   ++++     k+l+t +++a+++     + +  v+ +nn+ +l+++ l+v  S q+  s+
  CCD24863.1  45 SNPELsvYVGNIDP-NVTKAQLYELFVQVSPISKIaypkdKLLQTHQGYAFIEFYTPEDTNYVVKVMNNTvSLYDRFLKVRKSVQNLPSS 133
                 44443004556776.478889***********9998887789**************************9648*********999986544 PP

>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.9   7.2e-05      0.32       3      92 ..       6      97 ..       4      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.2e-05
        VPS9  3 qaseeLkklseaksPreKlkcllrtieeiteavskseegeslgaDdlLPiliyviikssppnlysnvqfikrFr..sktllegeegYylttl 92
                ++   L++ls+++   +  +c+ ++i +++++ +++++ ++     +   +   + k++  +l+ +v  i++    +++ll++++gY+++ +
  CCD24863.1  6 SIFTTLSQLSTYQASLDTANCIFECIYKVCSSSKMNSQMSNPELSVYVGNIDPNVTKAQLYELFVQVSPISKIAypKDKLLQTHQGYAFIEF 97
                57789****************************88888888888889999999999999999999999999875548888999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1969.45
//
Query:       CCD24864.1  [L=699]
Description: hypothetical protein NDAI_0E00480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.9e-86  288.5   0.0    9.3e-86  288.0   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    0.00023   22.0   0.0     0.0022   19.0   0.0    2.4  2  AMP-binding_C  AMP-binding enzyme C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.0   0.0     1e-89   9.3e-86      10     422 ..      87     561 ..      80     562 .. 0.85

  Alignments for each domain:
  == domain 1  score: 288.0 bits;  conditional E-value: 1e-89
                  TSEEEEE.CCSTEEEEHHHHHHHHHHHHHHHHHTTS..STT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTC CS
  AMP-binding  10 dkvalvd.sgegqtlTYreldervnrlAagLrslGv..kkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvds 104
                  +k+ l++    ++  T+++l    n l++gL ++G+  + +d+  i++ +s+ w+ +++++++ ++ vv+ ++tl+++ l + ++++++++++  +d+
   CCD24864.1  87 EKTWLYYeLSPYHYTTFKQLITIMNHLGKGLNKIGLnpNTEDKLHIYASTSHKWLKMFMGAQSQSLPVVTAYDTLGEHGLIHSIRQTNSSAIF--TDN 182
                  556665564568999*****************99995566789**************************************************..999 PP

                  CCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS............................-TSCCCS-BTTSEEEEEEE--SSSS- CS
  AMP-binding 105 elleklleaaakleavklvivldadellkeeelkeeeeseekae............................kpeeeeelkpddlayiiYTSGTTGkP 174
                   ll++l +  ++ +     +v+++d+++ +++ ++ +  + ++e                            ++ e + +kpddl +i+YTSG+TG P
   CCD24864.1 183 SLLNSLINPLKECKGI--RYVIHTDKIDPNDKRQNGKLYSTANEaiekikeirpdikvysfdeilelgeendNNIELHLPKPDDLSCIMYTSGSTGDP 278
                  9988888888765444..5555555555554444444333333245678899999****************955577799****************** PP

                  EEEEEEHHHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCH..HHHHHHHHHHHT-SEEEEEHHHHHHH... CS
  AMP-binding 175 KGVmlshrnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaald..pklllelieklkvtviagvPrvleal... 267
                  KGV+l+h n+va +  ++l+ +  ++++d+v+++lplahif++ +++ll++l+G+++++++ ++ ++   + + +++ ++k+t+++gv +v+e +   
   CCD24864.1 279 KGVVLKHSNIVAGIGGASLNVQGITGPTDRVIAFLPLAHIFEM-AFELLSILWGSCLGYATVKTLTNnsVRNCQGDLIEFKPTIMVGVAAVWETVrkg 375
                  ****************88887777889***************8.***************99888855477778899999****************888 PP

                  .......HHCCCHHC.....HHHHC........................CGTT.-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECH CS
  AMP-binding 268 .......lesgalka.....akkak........................dlss.lrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlp 328
                         l  + ++      a++ak                          ++ lr++l gg+pls+++++f+ +l + ++l gYGlTEt + +t+l+
   CCD24864.1 376 ilqqineL--PMITRkifwaAYYAKlkmnnyyipggnllgnivfkkvrnATGGnLRYMLNGGSPLSRNAQEFITNLIC-PMLIGYGLTETVANTTILD 470
                  86664331..22221344444444478888888888888888888888866677**********************76.5**************9555 PP

                  CTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 329 leedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                   +++   lg +G     v vk+vD e++++++++++Ge++++g++v + Y+k+pe+t++a++ +++w+ TGD+g++++ G+l++++Rkk+l+k+
   CCD24864.1 471 -PTH-FELGVAGDLTGAVTVKLVDVEELGYLAKNNQGEVWIKGACVLPEYYKNPEETEKALT-KDGWFMTGDIGEWTPHGHLKVIDRKKNLVKT 561
                  .444.57899***************************************************9.767**************************98 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.22     2e+03      29      75 ..     509     564 ..     486     565 .. 0.65
   2 !   19.0   0.0   2.4e-07    0.0022       1      64 [.     571     634 ..     571     647 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.22
                    -EEEEEE---....---HHHHHHHHH...HHHT-TTTS-S.EEEE-S-...--B-TTS CS
  AMP-binding_C  29 lvafVvlkdg....sealeeeLkahv...rkelgpyavpk.kvvfvde...lpktrsG 75 
                    +++  vl  +    +e++e++L +     +  +g++ +p+ +++++d+   l kt++G
     CCD24864.1 509 IKGACVLP-EyyknPEETEKALTKDGwfmTGDIGEW-TPHgHLKVIDRkknLVKTQNG 564
                    55555542.222112335666665434447799999.888788899876779999998 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 2.4e-07
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---.---HHHHHHHHH......HHHT-TTTS-SEEE CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg.sealeeeLkahv......rkelgpyavpkkvv 64 
                    ++Es++ s + V++++V+++ ++     +v+++v++   +    ++L +++       + ++py + kk+v
     CCD24864.1 571 KLESIYRSNQYVQNICVYADENK---VKPVGIIVPNHApV----RKLAKQLgvmketDDDIEPYLTDKKLV 634
                    58****************99999...899******42222....233332222222255777776666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4842.73
//
Query:       CCD24865.1  [L=346]
Description: hypothetical protein NDAI_0E00490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-57  195.0  16.3    1.4e-57  194.8  16.3    1.0  1  Bac_rhodopsin  Bacteriorhodopsin-like protein
  ------ inclusion threshold ------
       0.04   13.6  12.3        1.2    8.8   0.5    2.3  2  DUF4131        Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Bac_rhodopsin  Bacteriorhodopsin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.8  16.3   1.6e-61   1.4e-57       1     220 [.      37     276 ..      37     279 .. 0.98

  Alignments for each domain:
  == domain 1  score: 194.8 bits;  conditional E-value: 1.6e-61
                    HHHHHHHHHHHHHHHHHHHHHTTTSSTCCHHHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEETTEE..............EEEETHHHHHHHHHHH CS
  Bac_rhodopsin   1 wtvfsvfallalvatllfvvtsrrvkdgekrkllvipllitaiaavaYltmalglGltgveaefeh..............rqvfyarYidWllttP 82 
                    w+vfs+f+ + l ++++f++ + + +++++r++++ +lli+++ ++aY+t+a+ lG+tg+eaef+h              rq+fy +Y +W+l++P
     CCD24865.1  37 WAVFSIFGCFLLCYLVFFFYAEIK-GSKLTRYAVAPALLISFFQFFAYFTYASDLGWTGIEAEFNHitvktsitgehpgvRQIFYSKYCAWFLSYP 131
                    9***********************.9********************************************************************** PP

                    HHHHHHHHHTTSS...........HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSTHHHHHHHHHHHHH CS
  Bac_rhodopsin  83 llvlvlaelagad...........rrtllvlvladvvmivgglvgaliestyrwvyftisvaallvvlylllgelaraakslsserrslfntLrnl 167
                      +l+l el g +           +++ll++++a+++++v +lvgali+sty+w+y+t++++a+l+v  +++   +r++  l+ ++ ++++ +++ 
     CCD24865.1 132 C-LLFLLELSGLSssdedvsaldtIHSLLMQMIATEFWVVSLLVGALIKSTYKWGYWTFGAVAMLLVQGVII---KRQFFTLNVKAIEFKSLMLMT 223
                    *.**********************************************************************...99**999999999******** PP

                    HHHHHHHHHHHHHHSTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHTTCH CS
  Bac_rhodopsin 168 vvvlwilYpvawllgeeGngiqpdveavvygilDlvtkvgfglillaaatslg 220
                     +++++lY+++w+++e+Gn+iqpd e+v+yg+lDl ++++++++l+ ++++ g
     CCD24865.1 224 SMLIVWLYFICWGISEGGNVIQPDGESVFYGVLDLCMFAVYPAFLVFTIAKDG 276
                    **********************************************9988765 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.7   0.00015       1.4       4      51 ..      35      88 ..      32      93 .. 0.85
   2 ?    8.8   0.5   0.00013       1.2       4      59 ..     183     244 ..     180     256 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00015
     DUF4131  4 plalvllalllllllllllllrr......rprrrvllllllllllallgfalra 51
                +l++v+ +++++ll++l+++++        +r+ v+ +ll+ ++ ++++f++ +
  CCD24865.1 35 WLWAVFSIFGCFLLCYLVFFFYAeikgskLTRYAVAPALLISFFQFFAYFTYAS 88
                78999999999999999999999***9988888889999999999999988765 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00013
     DUF4131   4 plalvllalllllllllllllrr......rprrrvllllllllllallgfalrapqpnandl 59 
                  + +++++++++ll+  ++++r+      +      l+l+  +l+++l+f ++  + + n +
  CCD24865.1 183 KWGYWTFGAVAMLLVQGVIIKRQfftlnvKAIEFKSLMLMTSMLIVWLYFICWGISEGGNVI 244
                 5889***************988788877766666699999999******9999887777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2642.84
//
Query:       CCD24866.1  [L=551]
Description: hypothetical protein NDAI_0E00500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-53  181.2  11.0    4.1e-53  180.1  11.0    1.5  1  Cation_efflux  Cation efflux family
  ------ inclusion threshold ------
      0.026   13.9   1.8      0.034   13.5   0.1    1.8  2  DUF1646        Protein of unknown function (DUF1646)


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.1  11.0   4.6e-57   4.1e-53       6     199 .]      14     340 ..       9     340 .. 0.98

  Alignments for each domain:
  == domain 1  score: 180.1 bits;  conditional E-value: 4.6e-57
  Cation_efflux   6 lanlilalvelivglltnSlalladafhslsdlvsllllllalkls.rkppderfpfGygrlevlgalvsgllllglavfllleaiqklikegere 100
                     +  +++l e++ g++++Slal+ad+fh+l d++sll++l a+ ++ +++pd+++++G++r+e lgalv++++l++l +++++ea+q+l+ ++e+ 
     CCD24866.1  14 TLDSVFFLLEITIGYMSHSLALIADSFHMLNDIFSLLVALWAVNVAkNRDPDAKYTYGWKRAEILGALVNAVFLIALCFSIFIEALQRLL-QPEEI 108
                    567899************************************************************************************.***** PP

  Cation_efflux 101 ihaglalvvalvslvvnlalllilrragrkl................................................................. 131
                    +++ l+l v++++l+ nl++l +++ +g+ +                                                                 
     CCD24866.1 109 QNPRLVLYVGIAGLISNLFGLVLFHDHGHGHshghdhghshggdllelgteqqhhthshdleanmshshshshphsntdlstesslsksntpaism 204
                    ****************************999***************************************************************** PP

  Cation_efflux 132 ....................................................................rsaalkaaalhvlgDaltslgvlvsalv 159
                                                                                        rs ++++++lhv+gDal+++gv+++al 
     CCD24866.1 205 snedlddvlpdmvveriasentsllpkdtnenentlptssttitnnnisttptpisntmktknqkksqRSLNMHGVFLHVMGDALGNVGVIIAALT 300
                    ************************************************************************************************ PP

  Cation_efflux 160 illfnlksgplaDpvaslligliilysalkllkeslseLl 199
                    i+ +n+ ++++ Dp++slli +ii+ sal+l ++++++Ll
     CCD24866.1 301 IWKTNYSWKYYTDPIVSLLITIIIFSSALPLSRKASRILL 340
                    ****99988*****************************97 PP

>> DUF1646  Protein of unknown function (DUF1646)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2      0.11     1e+03      68      93 ..      81     106 ..      70     131 .. 0.59
   2 ?   13.5   0.1   3.8e-06     0.034     137     287 ..     269     420 ..     247     427 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.11
     DUF1646  68 itqavllaGlvfellkkklksllaev 93 
                 ++ av+l+ l f ++ + l+ ll+  
  CCD24866.1  81 LVNAVFLIALCFSIFIEALQRLLQPE 106
                 56778888888888888777777532 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.8e-06
     DUF1646 137 rkekvklvviasfaiGlGaaltPvGePlstiavsklnedflylidvlgeyiiiavlvlallaalslkrlskreelvevveyeeelkevliravkvfvfi 235
                 +k++ +l + + f   +G al  vG  ++++++ k n ++ y  d +   +i ++++++ l + +       + +  ++ +++  +e+l+    v v  
  CCD24866.1 269 KKSQRSLNMHGVFLHVMGDALGNVGVIIAALTIWKTNYSWKYYTDPIVSLLITIIIFSSALPLSRKASRILLQGTPSTISADDVQREILTVPGVVAVHD 367
                 3444556778889999*****************************999988888888777666655555556666677778888899998876677766 PP

     DUF1646 236 lal.ellGegfkPlikayiaklkseilywvnlisavvdnatlaaaeisPelte 287
                 + + +l  + f   i++ i  ++ ++l+   li  +  n  + +a + Pe+ +
  CCD24866.1 368 FHIwNLTEAIFIASIHVEIDCIPDKFLFSAKLIRNIFHNHGIHSATVQPEFIS 420
                 55416667889999***********************************9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4082.02
//
Query:       CCD24867.1  [L=344]
Description: hypothetical protein NDAI_0E00510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
        1.1    9.0   3.2         27    4.6   0.0    2.3  2  Integrase_DNA  DNA binding domain of tn916 integrase


Domain annotation for each model (and alignments):
>> Integrase_DNA  DNA binding domain of tn916 integrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   1.2    0.0023        41       2      22 ..     265     285 ..     264     287 .. 0.87
   2 ?    4.6   0.0    0.0015        27      25      45 ..     310     331 ..     308     337 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0023
  Integrase_DNA   2 sekRkDskgrvLrtGEsqrkd 22 
                    ++k k  k+r Lr++E   +d
     CCD24867.1 265 KKKHKERKERFLRENELDLED 285
                    6899************88776 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0015
  Integrase_DNA  25 YeYkYtd.vlgkrkfvYskkLe 45 
                    Y +kY + + gk + v +++L+
     CCD24867.1 310 YDFKYLNgKSGKGRNVKANTLD 331
                    9*****999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2654.95
//
Query:       CCD24868.1  [L=357]
Description: hypothetical protein NDAI_0E00520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 2511.90
//
Query:       CCD24869.1  [L=172]
Description: hypothetical protein NDAI_0E00530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-53  178.7   1.2    5.2e-53  178.3   1.2    1.2  1  Ribosomal_L18A  Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A


Domain annotation for each model (and alignments):
>> Ribosomal_L18A  Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.3   1.2   2.9e-57   5.2e-53       1     121 []       4     127 ..       4     127 .. 0.99

  Alignments for each domain:
  == domain 1  score: 178.3 bits;  conditional E-value: 2.9e-57
                     -EEEEEEEEEEET....................................................................TEEEEEEEEEEESS CS
  Ribosomal_L18A   1 lkeYeVvGrklpsekepepkvyrmrifapnevvak...wyflkklkkvkkanGeilavkkieekkptkvknygiwlrydsrsgthnfykeyrdlt 92 
                     lkeY+V+Gr+lp+e+ pepk++rmrifa nevvak   wyfl+kl+kvkka+Ge++++++i+e +ptkvkn+g+w+rydsrsgthn+yke+rd++
      CCD24869.1   4 LKEYQVIGRRLPTESVPEPKLFRMRIFASNEVVAKsryWYFLQKLHKVKKASGEVVSINQIHEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVS 98 
                     69********************************************************************************************* PP

                     HHHHHHHHHHHHHHHS---GGGEEEEEEE CS
  Ribosomal_L18A  93 eegaveqvYselgsrhrakrssIqIekve 121
                     +  av+++Y+++++rhr++ +sI+I+kv+
      CCD24869.1  99 RVAAVDTLYQDMAARHRTRFRSIHILKVA 127
                     ***************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1329.29
//
Query:       CCD24870.1  [L=293]
Description: hypothetical protein NDAI_0E00540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.047   14.0   0.8      0.094   13.0   0.1    1.8  2  DMT_YdcZ  Putative inner membrane exporter, YdcZ


Domain annotation for each model (and alignments):
>> DMT_YdcZ  Putative inner membrane exporter, YdcZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.29   5.2e+03     116     138 ..     136     158 ..     131     179 .. 0.61
   2 ?   13.0   0.1   5.3e-06     0.094      29      77 ..     201     261 ..     191     266 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.29
    DMT_YdcZ 116 gvekrplsltrllGlllllaGvv 138
                 g+  r+ ++  + G+l  ++G++
  CCD24870.1 136 GALMRKKEIHTYNGVLWYILGLI 158
                 55555555555555555555544 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 5.3e-06
    DMT_YdcZ  29 splaAalvsflvGlivllllllllrks....aalaalk........svpwwallGGllGav 77 
                 + la +l +f+vG++++ll+   l  +    ++l +++        s++ + +lGGl+Ga+
  CCD24870.1 201 KSLAGSLAAFIVGFVTTLLFYGYLVPRydyvNKLGEIQwtpqtsklSLNTLSWLGGLVGAL 261
                 46999**********999988777754467866666667777777789***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2378.51
//
Query:       CCD24871.1  [L=523]
Description: hypothetical protein NDAI_0E00550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-81  272.3   0.3    2.8e-81  272.3   0.3    2.1  2  Nop         snoRNA binding domain, fibrillarin
    1.2e-18   67.2   1.8    1.2e-18   67.2   1.8    2.5  2  NOP5NT      NOP5NT (NUC127) domain
  ------ inclusion threshold ------
      0.018   15.5  44.2      0.031   14.7  44.2    1.4  1  DUF4604     Domain of unknown function (DUF4604)
        4.3    7.1  30.8         11    5.8  30.8    1.8  1  RR_TM4-6    Ryanodine Receptor TM 4-6


Domain annotation for each model (and alignments):
>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.3   0.3   6.3e-85   2.8e-81       1     229 [.     169     399 ..     169     400 .. 0.94
   2 ?   -9.4   8.7         4   1.8e+04      63      73 ..     482     492 ..     452     521 .. 0.39

  Alignments for each domain:
  == domain 1  score: 272.3 bits;  conditional E-value: 6.3e-85
                 HHHHHHHHHHHHHHHHHHHHTTTSTCHHHHS-SHHHHHHHHHHCCCCHCCT.HHTT.HHHHHHHHHHHHCHHHH-SSS-S-HHHHHHHHHHHHHHHHHH CS
         Nop   1 lldeidkeintlhkrvrewYswhFpELeslvkdnleYakvvkligneredlekkeedeelakevimaakvtastsmgaelseedlknikelcdrvlele 99 
                 lld++dke+nt+++r++ewY+whFpEL+++v+d+++Ya+++ ++g  r+++++++ +e l++e+ + +k++a+ smg+e+++ dl+nik l+d+++e++
  CCD24871.1 169 LLDDLDKELNTYAMRCKEWYGWHFPELAKIVTDSVAYARLILTMG-VRSKASETDMSEILPEEIEERVKTAAEVSMGTEITQIDLDNIKCLADQIVEFA 266
                 689******************************************.7788877754444999999999999999************************* PP

                 HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHSSHHHHHCS-HHHHTTTT-HHHHCCCHH.T---SSSCHHHCSHHHHHTS-CCCHHHHHHHHH CS
         Nop 100 elrkelleYlesrmsaiAPNlsaLvGeevaarLishaGgLtnLakmPastiqilGaekalfralk.kkntpkyGliyhselvqkatppklkkkiaRlla 197
                  +r++l++Yl+ rm+aiAPNl++LvGe v+arLi+h G+L +Lak PastiqilGaekalfralk k++tpkyGl+yh++lv++a + k+k+kiaR+la
  CCD24871.1 267 AYREQLSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKtKHDTPKYGLLYHASLVGQA-TGKNKGKIARVLA 364
                 *****************************************************************888***************77.99*********** PP

                 HHHHHHHHHH...HTT----SHHHHHHHHHHHHHH CS
         Nop 198 aKvalaaRiD...afsekdgslGkklreeiekklk 229
                 aK+a+  R D   + ++++g++G + r+++e++l+
  CCD24871.1 365 AKAAVSLRYDalaEDRDDSGDIGLEARAKVENRLS 399
                 **********765555555**************96 PP

  == domain 2  score: -9.4 bits;  conditional E-value: 4
                 HHHHHHHCHHH CS
         Nop  63 evimaakvtas 73 
                 ++ +  +v+++
  CCD24871.1 482 RKRDEEEVESK 492
                 11111111111 PP

>> NOP5NT  NOP5NT (NUC127) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   1.8   2.7e-22   1.2e-18       1      65 []       3      66 ..       3      66 .. 0.99
   2 ?  -12.7  11.9         4   1.8e+04      20      20 ..     496     496 ..     461     521 .. 0.61

  Alignments for each domain:
  == domain 1  score: 67.2 bits;  conditional E-value: 2.7e-22
      NOP5NT  1 fiLfEtaaGYaLfkvkdkkllkkddlvkdsvsdlekfsklvkLkaFqkFesaaeALenanaiseG 65
                ++L+Et+aGYaL+k++dkk  k+++l++d +++ +k+ k +k+ aF+kF+saa+ALe+ n+i+eG
  CCD24871.1  3 YVLTETSAGYALLKASDKKIYKSSSLIQD-LDTSDKVLKEFKIAAFSKFSSAANALEESNSIIEG 66
                9**********************99****.**********************************9 PP

  == domain 2  score: -12.7 bits;  conditional E-value: 4
      NOP5NT  20 l 20 
                 +
  CCD24871.1 496 K 496
                 3 PP

>> DUF4604  Domain of unknown function (DUF4604)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7  44.2   6.9e-06     0.031      33     164 ..     372     522 ..     329     523 .] 0.48

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.9e-06
     DUF4604  33 krralpkkrdes..................eeeDea..PqVVvlkeGkhlsaeevevekdaakgkekeeeeeeeeegeeaeed..iefkkpkkasi.ke 108
                 +  al+++rd+s                  e  D    P VV + +   +++ ++ ++   ++++e++++++e+  + ++++d  +e kk+kk+++ k+
  CCD24871.1 372 RYDALAEDRDDSgdiglearakvenrlsqlEGRDLRttPKVVREAKKVEITEAQAYNADA-DTVAEPAASKSESGSDSDSDSDdeEEEKKEKKDKKdKK 469
                 44555555555566666555444333333333343378****986666666666644433.55555333333333333333334334444444444333 PP

     DUF4604 109 kasslaaksskkkkkgkvvgeedeeeedkskakkkekekkkakkkkkkkkkkkkkk 164
                 ++++ + k+ kk+k    ++ee e++e+k+++k+k+++k+k++kk+kk+kk+kk+k
  CCD24871.1 470 EKKDKKDKKDKKRK---RDEEEVESKESKKSKKDKKEKKDKKDKKEKKSKKEKKEK 522
                 33444444344444...222222222334444444444444444444444444444 PP

>> RR_TM4-6  Ryanodine Receptor TM 4-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  30.8    0.0024        11      79     162 ..     432     514 ..     364     523 .] 0.49

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0024
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXX CS
    RR_TM4-6  79 eesptpelkkklaeeeeaeeekeeeeepeaeaeekadaengekeekekekeeeekeseeeeeekkkkkkakskkkeeaeaeese 162
                  + ++p+++k +  +++ +++++eeee+++++ +k ++e+++k++k+ + +++++e+e+e++e+kk kk k++kk++++++e +
  CCD24871.1 432 DTVAEPAASKSESGSDSDSDSDDEEEEKKEKKDKKDKKEKKDKKDKKDK-KRKRDEEEVESKESKKSKKDKKEKKDKKDKKEKK 514
                 2222245555555445555555555555555545555555555554444.2222222222222222333333333322222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3140  (0.175135); expected 358.6 (0.02)
Passed bias filter:                      864  (0.0481901); expected 358.6 (0.02)
Passed Vit filter:                       437  (0.0243739); expected 17.9 (0.001)
Passed Fwd filter:                        85  (0.00474092); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.24u 0.36s 00:00:01.60 Elapsed: 00:00:00.50
# Mc/sec: 3158.06
//
Query:       CCD24872.1  [L=589]
Description: hypothetical protein NDAI_0E00560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-53  181.2  44.9    5.3e-53  180.5  44.9    1.3  1  SART-1    SART-1 family


Domain annotation for each model (and alignments):
>> SART-1  SART-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.5  44.9     3e-57   5.3e-53       1     630 [.      14     575 ..      14     576 .. 0.64

  Alignments for each domain:
  == domain 1  score: 180.5 bits;  conditional E-value: 3e-57
      SART-1   1 slSiEEtNklRakLGLkPLe.ddekkeekskkeddeeedaastledreaeaeenvkkaqeeeakkkkreelkerikkarek.rereaklkgktLgeddd 97 
                 slS+EEtNklR++LGLkP++ + +k++               +++   +   e vkk++e  + k      +++i+  r +  ++++++   tL ++++
  CCD24872.1  14 SLSVEETNKLRISLGLKPIPiP-TKNNL-------------VSKDIGLETRLEAVKKENESVDGKPH-FIANDKINLLRRRlTNIKNNIGKVTLLDEQE 97 
                 89******************43.33321.............11222222334666666655555444.4667777766554156666777667777333 PP

      SART-1  98 ..ed.ddakaWvkkskkrqkekkeaearakareldee.eeeekaaaaeytskdLaGlkVaHdlddfeegeeviLTLkDkgvllde......e.eDeLeN 185
                    d    ++W+ k  +r+k+  +a+++++  +l  e e     ++++ + ++   +k aH+++d++ g++ iLTLk++++l+d+      e +D LeN
  CCD24872.1  98 rkTDpTGDEDWLPKIGQRKKSGGAALKKKQRVALSYEhE-----EEDDESGANFPIMKLAHNISDIKAGKDIILTLKESNILDDDdrgsedEaGDMLEN 191
                 2222566789********998888888766666533323.....23455799*****************************977645555444466*** PP

      SART-1 186 vnlaekeklkknlelkkkkkkgYdpyeddedee.keksiLskYDeeidgkk..kkksftLgdgsatsaeereekeeikeklkkkklsLdltknaeasDy 281
                  +l++++++ knlel++ +k+      ++   + +++ i    D+e+++k    k+++++g  ++++ + +  ++ i+  ++ +kl+  l +++e sD 
  CCD24872.1 192 ESLRQEKEDLKNLELRQMNKE-RR--RKKIALTiGSRAI---EDDEMNQKDieGKSTLVIG--AKNNIN-S--EKPISFTNSSNKLKVVLPSDEEESDI 279
                 *****************9774.22..3445556577755...8888966665445566664..333333.1..24455555555566666788899999 PP

      SART-1 282 lteeevkfKKpKkkk.kk..ktRkkeeelkddddeikaesdedemdvdeeakekekkrkaeeeveedsfvDDde.LqaaLakqRraalkkr.k..klrp 373
                  + +  k++K+ kk+ +k  ++Rkk +      ++i      ++++  +e            e++++s  D  + L+ +L+k + ++++ +    k +p
  CCD24872.1 280 GDFKPAKIRKRSKKQdSKilNKRKKIS----IHHAI------KNVELTDE------------EENDNS-LDSLDtLAPTLKKGKSKSETADlSsrKITP 355
                 999999999999998555322222222....22223......22333332............123443.454455*******99988544432338999 PP

      SART-1 374 edvakqlkeereeee.eekee.......eeegglvldetseFvrnlgeieekeeekanrekeeesveeeeeeeeeeddeeededveealeeaeeeeeee 464
                 ed+a q+++e+ eee ++k          ++ ++v+de + F+++lg++  +      +e  ++++++++ e+++      +e   +   +  +e++  
  CCD24872.1 356 EDIALQIRKEKFEEEeRSK-GidrlrkaAASPRIVIDESTVFLESLGSTLPTT-----TE--TDTIPKSHIEKTS------NEL--V--RR--DENA-- 432
                 **********999973333.234565445559***************843333.....22..1111222222111......111..1..11..1111.. PP

      SART-1 465 ekeeeeesekeeskelsetgleeEptvskGlaaaLkllkqkglleeteeeekqrerqkflaekrrreekrreererdrksgkedkqsarerekyarren 563
                     e ++     +  +++ + +Ep+++ Gla++L++l+ +g+ e        +++++     ++ ++++ + r+  + +++e +qs   +e ++++++
  CCD24872.1 433 ----EISA-----EGNENNFVVQEPNFTDGLASTLQFLQTRGVFE------DIKAKDNHSSSSNKVDDQTLKVRR--SMTVEEVHQS--IEETVKKNKQ 512
                 ....1111.....1122233569**********************......344444444444444443332222..3335555555..4444444433 PP

      SART-1 564 rqreqqeareaaeffekdYkPdvklkYvDefGreLtqKEAFkqLSHkFHGkgsGkkKtEKrlkKiee 630
                   +  + ar +++   +dY+P+++l Y D +G+eLt+KEA+k LS+kFHG +s++kK  K   Ki++
  CCD24872.1 513 --K--YPARGLERDALQDYNPSISLIYKDKEGNELTTKEAYKRLSQKFHGTKSNEKKLAKAREKIKA 575
                 ..3..456666644447********************************************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1453  (0.0810419); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.24s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4271.59
//
Query:       CCD24873.1  [L=477]
Description: hypothetical protein NDAI_0E00570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-23   81.6  28.0      8e-20   71.3  28.0    3.8  1  TPT       Triose-phosphate Transporter family
      4e-05   23.8  25.7     0.0022   18.2   8.6    3.7  4  EamA      EamA-like transporter family
  ------ inclusion threshold ------
       0.15   12.5   0.3       0.33   11.3   0.3    1.7  1  DUF1689   Protein of unknown function (DUF1689)


Domain annotation for each model (and alignments):
>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3  28.0   1.3e-23     8e-20       2     289 ..      96     469 ..      95     470 .. 0.85

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 1.3e-23
         TPT   2 klgllfllWYllnvvfnilnKkilnvfpyPltvsavqllvgsvlilvlwal.glkk.........................................rp 58 
                 k+++l+l+WY+++++   l K il+ f+ P+ ++++q+l+   l++++ +l +l++                                          +
  CCD24873.1  96 KITILCLAWYITSSISSNLSKAILKGFKHPVALTELQFLISATLCIMFVSLlNLNEkfkksadfnhrkltclnkiidkfpemiipkylngsfqdsiiNT 194
                 799**********************************98876555554444477667888********************************9998633 PP

         TPT  59 kisse..flkailplalvktlghvlavvslskvaVSfthtvKasePiFtvilsrlllgekl....sllvylsLlpivgGvala...............s 136
                  ++ +  ++++++p++l++++gh++++ + + v++S  h vKa+ Pi tv    ++ g k     +   +l+L +++ Gv+++               +
  CCD24873.1 195 FLKPNqiVIMTVFPMGLFQFVGHITSHNATALVPISIVHSVKALSPIATVGYYYFIKGGKKradyNEYTFLTLSILIFGVIVTcwfthnntkktngakT 293
                 3333356899**********************************************987651111456789*********9862332222222222112 PP

         TPT 137 vtElsFnligfisAlisnltfslrnifsKkllkklkd............................ldalnlfaiitilslllllPvallvegvlktpsl 207
                 v   s  ++g+i  +is ++f+ +nif+K +++k k+                            +d+++++++ ++++++l++   +  e ++k  s+
  CCD24873.1 294 VISSSSLILGLIYSCISMIIFVAQNIFAKEMFNK-KSnsystshkkeylpstsiehsathtatkhIDKITILFYCSTIGFILTFIPFITGELIKKNNSV 391
                 333345589***********************99.555688899999***************9999999**********99988888888998888888 PP

         TPT 208 lkstkvslkevllllllsgvlfhlynqvaymvLervspvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGvflY 289
                 ++     + ++l l +++gv ++++   a+++++  s v +svan +Kr+v+I  + l  + +v++ + +G + +++G + Y
  CCD24873.1 392 FHDL---TLHILQLAIIHGVAHFIQALFAFQLIALLSSVNYSVANILKRIVIIL-VALSWESHVNWGQFLGLTFTLIGLYGY 469
                 8877...578999************************************98776.5789*******************9877 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.3   0.00018         1       4      52 ..      98     147 ..      95     167 .. 0.81
   2 ?   -0.2   0.1      0.17     1e+03      76     110 ..     214     248 ..     194     254 .. 0.52
   3 !    6.7   1.1    0.0013       7.5      15      76 ..     244     312 ..     234     324 .. 0.47
   4 !   18.2   8.6   3.6e-07    0.0022      24     133 ..     354     467 ..     348     469 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00018
        EamA   4 illallaalfwaiyfvlskillrkv.spltltfvrfliagillliiallk 52 
                  +l+l+  ++++i+  lsk++l+ + +p++lt ++fli++ l++++  l 
  CCD24873.1  98 TILCLAWYITSSISSNLSKAILKGFkHPVALTELQFLISATLCIMFVSLL 147
                 68999999*****************99**********9999997775443 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.17
        EamA  76 vlafllffyalkktsasnaslitslePvftlilsv 110
                 +++++    a   ++ s++  + +l+P+ t+ + +
  CCD24873.1 214 FVGHITSHNATALVPISIVHSVKALSPIATVGYYY 248
                 33344444555555566666666666666655554 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0013
        EamA  15 aiyfvlskillrkvspltltfvrfliagillliiallkegkl.......aklslkdwllllllgllgtv 76 
                   y+ ++k + ++ +  ++tf+++ i  + ++++++++ ++         ++s ++++l l++++++++
  CCD24873.1 244 VGYYYFIKGGKKRADYNEYTFLTLSILIFGVIVTCWFTHNNTkktngakTVISSSSLILGLIYSCISMI 312
                 445555555544444444444444444444444444444444224444444444443333444444433 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 3.6e-07
        EamA  24 llrkvspltltfvrfliagill.liiallkegkl..aklslkd..wllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekl 117
                 + + ++ +t++f+ ++i++il  ++++  + +k+  ++++     +l l+++  ++ ++  l+ f+++  +s+ n s+++ l  +++++ +  +   ++
  CCD24873.1 354 ATKHIDKITILFYCSTIGFILTfIPFITGELIKKnnSVFHDLTlhILQLAIIHGVAHFIQALFAFQLIALLSSVNYSVANILKRIVIILVALSW-ESHV 451
                 5678999************998456666666666444454444556666666668889999**********************99988888777.**** PP

        EamA 118 tlkqllgivlillGvl 133
                 ++ q+lg+ + l+G++
  CCD24873.1 452 NWGQFLGLTFTLIGLY 467
                 **************97 PP

>> DUF1689  Protein of unknown function (DUF1689)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   5.6e-05      0.33      42      96 ..     274     339 ..     259     376 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.6e-05
     DUF1689  42 savflaptayrryktgaikgvkvprsfllGl......valvvssqlaakyaykkklkeld.....e 96 
                 ++v + +t  ++ kt+  k+v  + s++lGl      + ++v++++ ak +++kk +++      e
  CCD24873.1 274 VIVTCWFTHNNTKKTNGAKTVISSSSLILGLiyscisMIIFVAQNIFAKEMFNKKSNSYStshkkE 339
                 4555566666667777788888888*****933332234678899999999999999887333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3271.89
//
Query:       CCD24874.1  [L=559]
Description: hypothetical protein NDAI_0E00580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-24   87.1  27.9    2.3e-24   86.0  24.2    2.1  2  MFS_1           Major Facilitator Superfamily
    4.6e-09   35.6  26.4    5.3e-08   32.2   3.7    3.2  3  Sugar_tr        Sugar (and other) transporter
    7.6e-05   21.7  12.4     0.0046   15.9  10.7    2.4  2  MFS_1_like      MFS_1 like family
  ------ inclusion threshold ------
      0.036   14.5   0.7       0.81   10.2   0.2    2.6  2  DUF4231         Protein of unknown function (DUF4231)
        8.9    6.3  13.1         13    5.7   0.0    2.3  2  DUF2076         Uncharacterized protein conserved in bacteria


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.0  24.2   6.4e-28   2.3e-24       5     352 ..     151     510 ..     144     511 .. 0.74
   2 !    7.6   0.3   0.00044       1.6     247     293 ..     497     546 ..     488     554 .. 0.63

  Alignments for each domain:
  == domain 1  score: 86.0 bits;  conditional E-value: 6.4e-28
       MFS_1   5 aflsalarsilgpalplalaedlg...ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslw.lllvlrvlqGl 97 
                 +++++++  +++ ++  +++++ +    + s+ig++++l  ++++++ ++ G   dr G ++ +++g +l ++g ++++ a  + lw ++l+l v +G+
  CCD24874.1 151 GLIACFGLLNATGVVENHIQNH-QladQNTSTIGWVFSLLLFTCFASCILSGTYFDRNGFKKPMIFGSILHIAG-MFAT-AnsTKLWhFFLALSVCCGI 246
                 4444444444444444433222.122345677******************************************.5555.33488************** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg............Wravfyilaivsllafvlfllllpeepperkrksp 184
                 g g+++   +   a++f++ +rg a+++++ag s+G +l pll   + s                 ++f+ +a++++   v+     + +++++  +s+
  CCD24874.1 247 GNGIILGPLVGCPAHYFSR-RRGTATAIATAGGSIGGALIPLLLRKFFSMTRpnnpdygymwgvRVWAFINMALLTIA-TVM--GQERLKQVDEIDESK 341
                 *******************.***********************99888666678998887755322334444444444.444..333444444444444 PP

       MFS_1 185 keee......kgtgpaplvp..awkallkdpvlwillialllfffgfsg...lltllplylqevlglsglllaglllallalvgailallagrlsdrlg 272
                 +e+e      +++  +   +    k ++ ++    +l++++++ fg  +   + t++ +y    +g++ +  ++ll++++ l g++++ + g+lsd lg
  CCD24874.1 342 TEKEtrwkrfVRVYLF---QsfDAKGFKDPK----FLFCVIGTVFGELSccaAITYFSSY-CNSHGIT-ASDSYLLIMVINLTGIPGRWVPGYLSDILG 431
                 4443334333333333...244366666677....4555555544555567799999999.*******.8***************************** PP

       MFS_1 273 rrrrlllallllllaalglallavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasglfntagslggalg 352
                 r +   ++ l++l +++++ +l++ ++ + ++++++l+Gf++g +f++l +++ +   +ee g+ ++ + ++ ++++++g
  CCD24874.1 432 RFNV-AIGTLFVLSIVMLVGWLPFGTDLTSMYVISALYGFFSGSTFSLLPVCCGQISKTEEFGKRYATTYSMVAIATLVG 510
                 7444.4444444445555666777778999999******************************99999999999999887 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00044
       MFS_1 247 glllallalvgailallagrls.dr..lgrrrrlllallllllaalglal 293
                 +++++++a++++++ +++g+++ d+  ++ + + +++++ +l++++++++
  CCD24874.1 497 ATTYSMVAIATLVGIPITGAIIgDKttVKYQHYVIFSGVTALVSCISFVI 546
                 33356666666666777888887886555566666666667777766665 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   3.7   1.5e-11   5.3e-08      24     119 ..     160     251 ..     144     258 .. 0.81
   2 ?    0.6   0.1     0.055     2e+02     381     439 ..     264     324 ..     252     337 .. 0.73
   3 !    7.4  14.2   0.00047       1.7     247     430 ..     361     540 ..     280     553 .. 0.51

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.5e-11
                 HHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGG.HHHHHHHHHHH CS
    Sugar_tr  24 tllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivg.RvlvGigvGla 119
                 + ++++ n+ ++++ ++++  ++++g+++s++l+ ++++++++g+  dr G kk ++++++l ++g + +a ++   +++ ++++  v +Gig G++
  CCD24874.1 160 NATGVVENHIQNHQLADQN--TSTIGWVFSLLLFTCFASCILSGTYFDRNGFKKPMIFGSILHIAGMFATANST---KLWHFFLAlSVCCGIGNGII 251
                 3444555555555555554..6899*************************************************...5555555548999***9997 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.055
                 TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH..T-HHHHHHHHHHHHHHHHHHHHS-- CS
    Sugar_tr 381 qsvRskalaiavavnwlanflisllfpiiteaig..ggyvflvfaglavlfiifvfffvpe 439
                 ++ R++a+aia+a   +   li ll   +++     ++ +++++++ + +fi + ++++  
  CCD24874.1 264 SRRRGTATAIATAGGSIGGALIPLLLRKFFSMTRpnNPDYGYMWGVRVWAFINMALLTIAT 324
                 5679999999999999999999999877665554547788888877777777666555544 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.00047
                 HHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHH...HHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHH CS
    Sugar_tr 247 sskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvai...flvdrfGRRtllllGaagmaicfvilgivalll 341
                 + k+    ++l +v   +f  l+ ++ai+y+s++  ++ g++ s    ++++v+n + +   +   +l+d +GR ++ +  +++ +i++++      ++
  CCD24874.1 361 DAKGfKDPKFLFCVIGTVFGELSCCAAITYFSSYC-NSHGITAS-DSYLLIMVINLTGIPGRWvpgYLSDILGRFNVAIGTLFVLSIVMLVGW--LPFG 455
                 33333333344444445666666666666666663.44444444.344445555555555443344666666666666666666666666552..3333 PP

                 TTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHH..HHHHHHHHHHCHHHT-HHHHHHHHHHHHHH CS
    Sugar_tr 342 vakskaasivaivfialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanf..lisllfpiiteaigggyvflvfaglavlfi 430
                 ++     s+ +i +++ f+   ++++ pv+   +s +   + R++++   va+  l+ +    +++   +t +   +  +++f g+ +l+ 
  CCD24874.1 456 TDL---TSMYVISALYGFFSGSTFSLLPVCCGQISKTEEFGKRYATTYSMVAIATLVGIpiTGAIIGDKTTVK---YQHYVIFSGVTALVS 540
                 333...3566666666666666666666655544444333333333333333333333200222222222222...223333333333322 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0     0.002       7.2      31      80 ..     177     226 ..     161     359 .. 0.82
   2 !   15.9  10.7   1.3e-06    0.0046      12     198 ..     379     548 ..     371     558 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.002
  MFS_1_like  31 lkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlfl 80 
                  + s ig + ++l +t ++s  + g+  Dr g +k+++  s+l  a +f+
  CCD24874.1 177 QNTSTIGWVFSLLLFTCFASCILSGTYFDRNGFKKPMIFGSILHIAGMFA 226
                 47899******************************988777766666655 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 1.3e-06
  MFS_1_like  12 faalgsl..lPYltiylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfippskerqeesklevsvaqdvdae 108
                 f+ l++   + Y++ y +s g++as++ ++ +++ lt i ++ + g l+D +g+ +  +    +ls+v++++ l  p                    ++
  CCD24874.1 379 FGELSCCaaITYFSSYCNSHGITASDSYLLIMVINLTGIPGRWVPGYLSDILGRFNVAIGTLFVLSIVMLVGWL--P--------------------FG 455
                 67777752256******************************************998777777777777777555..9....................** PP

  MFS_1_like 109 ktfwilfllvvlasfflaailvlldaat..lkelgedrkdyGrqrlfGsvGyaifafitGili.dhysvnllpysallyvlaallvisllvvl 198
                 +++ ++ ++ +l+ ff+ +++ ll + +  + +++e+ k+y+ +    ++   +  +itG++i d ++v++ +y+ +  v a++  is++++ 
  CCD24874.1 456 TDLTSMYVISALYGFFSGSTFSLLPVCCgqISKTEEFGKRYATTYSMVAIATLVGIPITGAIIgDKTTVKYQHYVIFSGVTALVSCISFVISR 548
                 ************************9998557788***************************99788899998898888888888888887754 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.095   3.4e+02      26      60 ..     280     326 ..     264     331 .. 0.83
   2 ?   10.2   0.2   0.00023      0.81       2      75 ..     485     558 ..     484     559 .] 0.93

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.095
     DUF4231  26 vlgallpilvs............sklgagvsvlkiltallsalvail 60 
                 ++gal+p+l                 ++gv+v+++++ +l  +++++
  CCD24874.1 280 IGGALIPLLLRkffsmtrpnnpdYGYMWGVRVWAFINMALLTIATVM 326
                 78899999888999999999998446799********9999999886 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00023
     DUF4231   2 qlswyekkasrakrrfrllrlitivlgallpilvssklgagvsvlkiltallsalvailaaleeffrykerWrr 75 
                 q+s++e+  +r+ +++ +++++t+v+  ++ +++ +k+ ++ +   i++ + ++++ i+  ++  f ++ +Wr+
  CCD24874.1 485 QISKTEEFGKRYATTYSMVAIATLVGIPITGAIIGDKTTVKYQHYVIFSGVTALVSCISFVISRYFCVGMKWRK 558
                 7888888899*************************999999******************99999**99999986 PP

>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9  12.2      0.37   1.3e+03     196     258 ..      56     119 ..      32     132 .. 0.40
   2 ?    5.7   0.0    0.0036        13     157     185 ..     270     298 ..     259     345 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.37
     DUF2076 196 aeeeeiinnyy...ssssladdaedadnasadsfad.......sdsssdnnadaasdddsdddssddgggDDd 258
                 +  +++ n+++   +++ l++d ++ d+  +d++++       ++++++++ d++++         ++++DD+
  CCD24874.1  56 SSANTVSNDNPtvdQGKVLSNDPKQYDQDAEDKDKNqlvrevtRERKNKDDDDDNNT---------SDSSDDS 119
                 344444455545542222222222222222222222111111122222222222222.........2333332 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0036
     DUF2076 157 ggAlqtAAGVaGGvllangleslfsgksg 185
                 ++A++tA G +GG+l+   l++ fs  ++
  CCD24874.1 270 ATAIATAGGSIGGALIPLLLRKFFSMTRP 298
                 58*******************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1191  (0.0664287); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 3810.24
//
Query:       CCD24875.1  [L=254]
Description: hypothetical protein NDAI_0E00590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-56  189.5   0.0    4.3e-56  189.3   0.0    1.1  1  DUF2034   Protein of unknown function (DUF2034)
    0.00012   22.1   0.0       0.28   11.2   0.0    2.2  2  Mrr_cat   Restriction endonuclease


Domain annotation for each model (and alignments):
>> DUF2034  Protein of unknown function (DUF2034)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.3   0.0   4.8e-60   4.3e-56       1     185 []      33     228 ..      33     228 .. 0.89

  Alignments for each domain:
  == domain 1  score: 189.3 bits;  conditional E-value: 4.8e-60
     DUF2034   1 stvfrGtlYEltvkrelekkLnvesLervGGayDgGvDivGkwnlkdv.leieeeaevdekpsklklgsir....ekklkykiidk......aedlkVl 88 
                 stvf+GtlYEltv rel +kL ++sLe+vGGa+DgGvDi+G+w ++++ ++ e  ++++ + s + + s+      ++l ++i d+      + +lkVl
  CCD24875.1  33 STVFQGTLYELTVLRELAEKLGMTSLEKVGGAHDGGVDIKGTWPISNLyKKLEAITHISDELSTIPKRSKVngrvFRPLIHRINDDillgkqFAPLKVL 131
                 8**********************************************9666666555554444444444443444777788887778888999****** PP

     DUF2034  89 vqCkalkk.kikpkeirELsGsfsshkakkkrkstlmilvspkllTksalklldklnipliylkisllk.ladgllsldlwnggalelvyenakarkll 185
                 vq ka+ + k++pke+rEL+G+fss++  +kr+st+++++sp++lTk++l+l++++++pliyl+i++l+ l+dg  s d  ++g l ++yen++a+kll
  CCD24875.1 132 VQAKAFRTtKVSPKELRELVGTFSSMVPDTKRNSTIILMCSPHMLTKDSLNLINNVKLPLIYLRIEMLRsLNDG--SYDIEKSGTLLNYYENEYASKLL 228
                 ******999***********************************************************988999..78889***************997 PP

>> Mrr_cat  Restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0002       1.8      12      39 ..      45      72 ..      40      83 .. 0.90
   2 !   11.2   0.0   3.1e-05      0.28      41      75 ..     122     156 ..     115     192 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0002
                HHHHHHHHHSSSEEE---B-TTSSB--E CS
     Mrr_cat 12 lvaellealGykeveltgrsgDggiDli 39
                +++el e+lG++++e +g++ Dgg+D+ 
  CCD24875.1 45 VLRELAEKLGMTSLEKVGGAHDGGVDIK 72
                578999********************85 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3.1e-05
                 EETTEEEEEEEEEEE--T.S-B-HHHHHHHHHHCTT CS
     Mrr_cat  41 kkdplgserilvqaKryk.nkvgvkeVqeligalkk 75 
                  k ++   ++lvqaK  +  kv+ ke++el+g+  +
  CCD24875.1 122 GK-QFAPLKVLVQAKAFRtTKVSPKELRELVGTFSS 156
                 43.455569********748***********98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       472  (0.0263261); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1944.28
//
Query:       CCD24876.1  [L=71]
Description: hypothetical protein NDAI_0E00600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.18   11.6   3.6        0.2   11.5   3.6    1.0  1  PCRF      PCRF domain


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.6   1.1e-05       0.2      20      82 ..      10      69 ..       2      71 .] 0.75

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.1e-05
                TGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT.....-S-..-GGGTHHHHHHHHHH CS
        PCRF 20 dqekakklskelaeleeivealeeleealedleeakelle.edeelaelaeeeleelekeleel 82
                + ++++++ ke  + ++iv+ ++ ++e ++ l+++k+ +e +dee+++     l+++e+ l+el
  CCD24876.1 10 EDRNVEEVEKEKDDSKNIVTVFDIASEIEKALRDVKKRIEdDDEEFNKS----LSNIEEMLKEL 69
                4578999****************************99996577777754....44444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2123  (0.118412); expected 358.6 (0.02)
Passed bias filter:                      786  (0.0438396); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.28s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 512.89
//
Query:       CCD24877.1  [L=1115]
Description: hypothetical protein NDAI_0E00610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-76  254.9   0.7    1.9e-75  253.8   0.7    1.6  1  SNF2_N           SNF2 family N-terminal domain
    9.2e-40  135.2   5.7    9.2e-40  135.2   5.7    4.5  4  SLIDE            SLIDE
    7.2e-32  110.4  19.2    7.2e-32  110.4  19.2    5.6  6  HAND             HAND
    2.2e-21   76.2   0.0    1.3e-18   67.4   0.0    3.1  2  Helicase_C       Helicase conserved C-terminal domain
    3.8e-12   46.5   0.1    3.8e-12   46.5   0.1    4.5  6  ResIII           Type III restriction enzyme, res subunit
    2.5e-05   24.1   0.0    7.4e-05   22.6   0.0    1.9  1  DEAD             DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.073   13.3   0.1        3.5    7.9   0.0    3.1  2  Myb_DNA-binding  Myb-like DNA-binding domain
       0.63   10.0   3.9        1.1    9.3   0.1    2.6  2  OTCace_N         Aspartate/ornithine carbamoyltransferase, ca


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.8   0.7   8.6e-79   1.9e-75      49     349 ..     190     463 ..     171     464 .. 0.87

  Alignments for each domain:
  == domain 1  score: 253.8 bits;  conditional E-value: 8.6e-79
                 HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  49 aeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkll 147
                 ++++++   GiLaDemGLGKT+q+++++    + + ++k       + gp+Li+vP+s+ld+W +e+++++++ +  +l++++++    ++   +  l+
  CCD24877.1 190 ISLHENKLSGILADEMGLGKTLQTISFLG---YLKYIKK-------IDGPFLIIVPKSTLDNWRREFNKWTPEVNAIILHGDKET---RHKIIYDFILQ 275
                 56789999*********************...6555555.......459*************************99777777765...55567888999 PP

                 ----EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 148 adydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllq 246
                 a +dv+it+Y+++ +e+      ++lk+v w+++v+DE+h++kn++s+++++++ L +++r+++tGTP+qn+l++l++Ll+fL +++fg+   fd++++
  CCD24877.1 276 ARFDVLITSYEMVIKEK------NALKKVAWQYIVIDEAHRIKNEESQLSQIIRLLYSKHRLLITGTPLQNNLHELWALLNFLLPDVFGDSGIFDDWFE 368
                 **************999......8**************************************************************************9 PP

                 HHHHHHHHH.HHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHH CS
                 xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 247 rpieaqaek.grsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqac 344
                 ++  +q+++  +++L+++l++++lrr+k+dvek+l pk+e  +++ +++++ k+Y+ lle+ +  +   + kr         + k+++l+++++lr++c
  CCD24877.1 369 QNNSEQDQEiVVQQLHTVLNPFLLRRIKADVEKSLLPKIETNVYVGMTDMQIKWYKSLLEKDIDAVNGAVGKR---------EGKTRLLNIVMQLRKCC 458
                 8877555551689*******************************************44444333333333222.........223669*********** PP

                 H---X CS
                 xxxxx RF
      SNF2_N 345 nhpql 349
                 nhp+l
  CCD24877.1 459 NHPYL 463
                 ***98 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.5       0.6   1.3e+03       2      90 ..       9     104 ..       8     120 .. 0.65
   2 ?    0.4   0.5      0.28   6.4e+02      14      73 ..     107     161 ..     103     186 .. 0.68
   3 ?    1.7   1.7      0.11   2.6e+02       8      81 ..     844     920 ..     840     923 .. 0.70
   4 !  135.2   5.7   4.1e-43   9.2e-40       1     114 []     944    1059 ..     944    1059 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.6
       SLIDE   2 kiikqIekgekkieklkelkellkkkveqyknplqelkikyp...psnkgkkeyteeeDrfllvllakyGygn.....yekikkeiresplFrfDwf 90 
                 k i++I + e++   ++e + +l++    +   l+e++i+++     +k+   ++e + rf+l++  k+  ++     y++ k  +   +lFr    
  CCD24877.1   9 KSIETIPSDEENESTQEENNLVLEEDPTPTPA-LSEVDISQNdidLGAKDDAYWQERKARFILTVDPKIAKQKdkkdtYKRFKYLLSLTDLFRHFIS 104
                 56677777777777777777777776665444.6667776666665667777799999999999877775555555667777777777777766444 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.28
       SLIDE  14 ieklkelkellkkkveqyknplqelkikyppsnkgkkeyteeeDrfllvllakyGygnye 73 
                  ++ k++++llk+  ++++      + +y + + +k+  ++eeD+ ll   +  G+++++
  CCD24877.1 107 AKHDKNMQKLLKEVEASTSASK--NE-NYVSRHHRKT--EKEEDAELLAEEEGEGLETFD 161
                 5566666666666555544432..23.6777777777..99*****99987777777755 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.11
       SLIDE   8 ekgekkieklkelkellkkkveqyknplqelk....ikyppsnkgkkeyteeeDrfllvllakyGygnyekikkeire 81 
                 ek e k+ k+ e+++ +k+  e+++n  +  +    ik++  ++  +++t     + +++ ak+G +n + ikk + +
  CCD24877.1 844 EKHETKLTKE-EIEQKIKEEQEKISNAPDYTEadeeIKQKLISEAFSNWTRRDLLAFVNACAKFGRDNIDMIKKSVES 920
                 4556666554.44555566666666555544444558888777777779999889999999999*********99876 PP

  == domain 4  score: 135.2 bits;  conditional E-value: 4.1e-43
       SLIDE    1 ekiikqIekgekkieklkelkellkkkveqyknplqelkikyppsnkgkkeyteeeDrfllvllakyGygn...yekikkeiresplFrfDwflksr 94  
                  ek++++I +gekk eklk++++ll+kk+eqyk+pl+e+ i+ypp+n++k+ y++ eD+fll +++k+G+ +   yek+k+ei+ s+lF+fDwf+++r
  CCD24877.1  944 EKYMNTIHNGEKKNEKLKHQETLLRKKIEQYKYPLHEMMIQYPPNNARKT-YNSLEDKFLLLMVNKHGITAknlYEKLKQEIMMSDLFTFDWFIRTR 1039
                  7***********************************************99.******************9889************************ PP

       SLIDE   95 tpqelqkRcetLlklvekel 114 
                  + +el+kR++tL++l+++e+
  CCD24877.1 1040 SVHELSKRVNTLMTLITREF 1059
                  ******************96 PP

>> HAND  HAND
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   3.0      0.39   8.8e+02      56     102 ..     110     155 ..      60     163 .. 0.71
   2 ?   -3.9   0.1         8   1.8e+04      49     100 ..     291     315 ..     284     320 .. 0.45
   3 ?   -3.1   0.5       5.9   1.3e+04      54     100 ..     664     709 ..     651     719 .. 0.47
   4 !  110.4  19.2   3.2e-35   7.2e-32       1     110 [.     748     886 ..     748     887 .. 0.87
   5 ?    1.7   0.8       0.2   4.4e+02      43      70 ..     958     985 ..     953    1025 .. 0.78
   6 ?   -1.3   1.9       1.7   3.7e+03      55     105 ..    1046    1096 ..    1038    1103 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.39
                 CCT----CCCHTTTS-SS.STTCHHHHHHHHHHHCT--SSS-CCHHH CS
        HAND  56 kigykvtlddkkeeeeeeekeeereekrkeeqekidnaepLteeeee 102
                   + +  l++++++++ + k+e+  ++++ + ek ++ae L eee e
  CCD24877.1 110 DKNMQKLLKEVEASTSAS-KNENYVSRHHRKTEKEEDAELLAEEEGE 155
                 333444455555555433.6788888888999999999999999976 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 8
                 HHHHHHHCCT----CCCHTTTS-SS.STTCHHHHHHHHHHHCT--SSS-CCH CS
        HAND  49 EqlaykKkigykvtlddkkeeeeeeekeeereekrkeeqekidnaepLteee 100
                 E++a kK + +++                            id+a+ + +ee
  CCD24877.1 291 EKNALKK-VAWQY--------------------------IVIDEAHRIKNEE 315
                 4444433.33333..........................3344444444444 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 5.9
                 HHCCT----CCCHTTTS-SS.STTCHHHHHHHHHHHCT--SSS-CCH CS
        HAND  54 kKkigykvtlddkkeeeeeeekeeereekrkeeqekidnaepLteee 100
                 +Kk  +  t +d +e  ++  +++++e + k +    d+ ++++e +
  CCD24877.1 664 EKKATHITTDADIDEILKKG-QQKTEELNAKYQSLGLDDLQKYNEID 709
                 34443333333332222211.33344444444444455555555554 PP

  == domain 4  score: 110.4 bits;  conditional E-value: 3.2e-35
                 XXXXXXXXXXXX..X--..--.--S--------GGC--S--CCHHHHHHHHHHHHHHCCT----.................CCCHTTTS-SS....... CS
        HAND   1 SvDkYYkdvlktgskks..tkkpkapraPKqiniqdfqffpkeLkeLqekEqlaykKkigykvt.................lddkkeeeeeee...... 74 
                 SvD+YYk+++++gsk+s  t++pk p++PK i+ qd+qffpkeL++Lq kEqla+kKk++ykvt                            e      
  CCD24877.1 748 SVDDYYKEIIGGGSKSSkqTPQPKIPKPPKRIQGQDYQFFPKELDQLQAKEQLAFKKKVNYKVTsyditgttgsdsdeeddD----------Eytengn 836
                 9*********99977776799*******************************************999998776543322220..........1345677 PP

                 ..............STTCHHHHHHHHHHHCT--SSS-CCHHHHHHHHHHH CS
        HAND  75 ..............keeereekrkeeqekidnaepLteeeeeekeellse 110
                               ++ee e+k+keeqeki+na+++te +ee k++l+se
  CCD24877.1 837 eatdndkekhetklTKEEIEQKIKEEQEKISNAPDYTEADEEIKQKLISE 886
                 7888888888899999********************************98 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.2
                 HHHHHHHHHHHHHCCT----CCCHTTTS CS
        HAND  43 keLqekEqlaykKkigykvtlddkkeee 70 
                 ++L  +E+l  kK  +yk++l++   ++
  CCD24877.1 958 EKLKHQETLLRKKIEQYKYPLHEMMIQY 985
                 68999***************88876665 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 1.7
                  HCCT----CCCHTTTS-SS.STTCHHHHHHHHHHHCT--SSS-CCHHHHHH CS
        HAND   55 KkigykvtlddkkeeeeeeekeeereekrkeeqekidnaepLteeeeeeke 105 
                  K+++  +tl   + e++e+ k++ + ++ ke+    +++    eeee+++ 
  CCD24877.1 1046 KRVNTLMTLITREFESSEALKKKRTRANTKEDSTPLNDVISVAEEEENQRI 1096
                  555555564444444444456777778888888888888888888888764 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.011        24      18      73 ..     229     284 ..     212     288 .. 0.71
   2 !   67.4   0.0   5.7e-22   1.3e-18       5     111 .]     488     598 ..     484     598 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.011
                 EEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEES CS
  Helicase_C  18 kilifvntidrlek.vklllekk...gikvavlhgelpqnereeileqfn.kgesdvLiat 73 
                   li+v++ + l++  + ++  k   ++++++lhg   ++ r +i+ +f  + ++dvLi++
  CCD24877.1 229 PFLIIVPKST-LDNwRREFN--KwtpEVNAIILHG--DKETRHKIIYDFIlQARFDVLITS 284
                 4555555444.333334442..23469********..89**********98999****987 PP

  == domain 2  score: 67.4 bits;  conditional E-value: 5.7e-22
                 HHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C   5 allell.kleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfdlprnv 97 
                  l +ll  l+e+g+++l+f++  + l+   ++    + g+++++++g++++++r+e+++++n   ++++ +L++t++++ Gi++  +++V+ fd ++n+
  CCD24877.1 488 VLDKLLkRLKEKGSRVLVFSQMSRLLDIlEDYC--YFrGFNYCRIDGSTSHEDRIEAIDDYNkpdSDKFVFLLTTRAGGLGINLVTADTVVLFDSDWNP 584
                 5666667789**************996654444..4469***********************765567779**************************** PP

                 HHHHHHHTTSSSTT CS
  Helicase_C  98 tsyiqriGRtgRag 111
                 +   q+++R++R+g
  CCD24877.1 585 QADLQAMDRAHRIG 598
                 ************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.5       1.2   2.8e+03      96     122 ..      97     134 ..      58     159 .. 0.44
   2 !   46.5   0.1   1.7e-15   3.8e-12       3     169 ..     177     337 ..     175     339 .. 0.84
   3 ?    0.1   0.1      0.32   7.1e+02      36     110 ..     484     559 ..     482     629 .. 0.48
   4 ?   -1.1   0.5      0.76   1.7e+03      56      74 ..     604     622 ..     586     722 .. 0.48
   5 ?   -3.4   2.0       3.7   8.3e+03      98     111 ..     842     855 ..     782     889 .. 0.52
   6 ?   -2.0   0.2       1.4   3.2e+03      56      56 ..    1000    1000 ..     929    1097 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
                 -...............-SEEEEEHHHHHHTH....... CS
      ResIII  96 a........kekdstnkkilvttiqsldadseee...e 122
                          k+k+++n++ l+ ++++ +++s++e   +
  CCD24877.1  97 DlfrhfismKAKHDKNMQKLLKEVEASTSASKNEnyvS 134
                 02222233333333444444444444444443333330 PP

  == domain 2  score: 46.5 bits;  conditional E-value: 1.7e-15
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.... 96 
                 +lr+yQ + ++ l+ +l+ +++  g+++ + G GKTl  +++  +l+  +k++  fl++vp+ +l + +++ef+k+++e +     +++gdk+++    
  CCD24877.1 177 KLRDYQVQGLNWLI-SLH-ENKLSGILADEMGLGKTLQTISFLGYLKYIKKIDgPFLIIVPKSTL-DNWRREFNKWTPEVN---AIILHGDKETRhkii 269
                 79*******99888.666.7999**************99888877776666666*******9887.57**********994...566666666665555 PP

                 ........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS..TTTHHHHHT---SEEEEEESS- CS
      ResIII  97 .kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.kswreilekfkeavllglTATp 169
                    + +   ++l+t+++++ +++       + l++ + ++i+iDEaHr++ + ++  +i++ + ++ +l +T+Tp
  CCD24877.1 270 yDFILQARFDVLITSYEMVIKEK-------NALKKVAWQYIVIDEAHRIKNEeSQLSQIIRLLYSKHRLLITGTP 337
                 65666777888888888888888.......99999999***********998459999*999999*********9 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.32
                 THHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...........-SEEEEE CS
      ResIII  36 GKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka....kekdstnkkilvtt 110
                 GK +v+ kl +rl++kg+  ++l++ +   ll+  le++  f   +y +i +++s + +++    ++k +++k +++ t
  CCD24877.1 484 GKMIVLDKLLKRLKEKGS--RVLVFSQMSRLLDI-LEDYCYFRGFNYCRIDGSTSHEDRIEaiddYNKPDSDKFVFLLT 559
                 777777777777777766..77777766666653.34444444444444444444444443444422333333333332 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.76
                 -EEEEESSHHHHHHHHHHG CS
      ResIII  56 kflflvprkslleqtleef 74 
                 ++  +v ++++ e+ +e+ 
  CCD24877.1 604 HVYRFVTENAIEEKVIERA 622
                 4444555555555554444 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 3.7
                 ......-SEEEEEH CS
      ResIII  98 ekdstnkkilvtti 111
                  k+++++k++ ++i
  CCD24877.1 842 DKEKHETKLTKEEI 855
                 12222222222222 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 1.4
                  - CS
      ResIII   56 k 56  
                  k
  CCD24877.1 1000 K 1000
                  2 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.3e-08   7.4e-05      18     149 ..     200     325 ..     179     345 .. 0.64

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.3e-08
                 EEEESTTSSHHHHHH..HHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSH.HHHHHHH..HTTCSEEEEEHHHHHHH CS
                 xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx..xxxxxxxxxxxxxxxxx RF
        DEAD  18 lvaaeTGsGKTlafl..ipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaa.rdqlskl..dngvdivvgtpgrlddl 111
                 ++a e G GKTl  +  +  l+ +    +k     li++P   L  +  ++++k++ +++  +  + g++++ ++ + ++  +++ d++++  +++++ 
  CCD24877.1 200 ILADEMGLGKTLQTIsfLGYLKYI----KKIDGPFLIIVPKSTL-DNWRREFNKWTPEVN--AIILHGDKETrHKIIYDFilQARFDVLITSYEMVIK- 290
                 678899*****9744003444444....66777899999*8877.445566666666433..33233433331333333345688************9. PP

                 HHCTSSHCTTE..EEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 112 lstgklnlsqv..rflVlDEadrlldqgfsdfinrilnql 149
                  +++   l++v  +++V+DEa+r+ ++  + ++++i++ l
  CCD24877.1 291 -EKNA--LKKVawQYIVIDEAHRIKNE--ESQLSQIIRLL 325
                 .6667..55554499***********9..66777777666 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0    0.0016       3.5       3      40 ..     890     928 ..     889     937 .. 0.93
   2 ?    1.5   0.0      0.16   3.5e+02       8      20 ..     998    1010 ..     991    1024 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0016
                      SSBHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhG.nrWkkIaerlggRtekqcrs 40 
                      +Wt  + + +++a++k+G ++ + I + + ++t+++++ 
       CCD24877.1 890 NWTRRDLLAFVNACAKFGrDNIDMIKKSVESKTPEEVIA 928
                      8*****************999**************9975 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.16
                       HHHHHHHHHHHHT CS
  Myb_DNA-binding    8 EdelLleavkkhG 20  
                       Ed+ Ll  v+khG
       CCD24877.1  998 EDKFLLLMVNKHG 1010
                       9***********9 PP

>> OTCace_N  Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.8      0.26   5.8e+02       1      36 [.     100     135 ..     100     148 .. 0.80
   2 ?    9.3   0.1   0.00047       1.1       8      79 ..     849     920 ..     846     959 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.26
                 S-BSSGGGS-HHHHHHHHHHHHHHHHHHHTTT-STT CS
    OTCace_N   1 rhllsledlskeeieelldlaaelkekvkkekkekl 36 
                 rh++s++   ++++++ll++ ++  +++k+e++ + 
  CCD24877.1 100 RHFISMKAKHDKNMQKLLKEVEASTSASKNENYVSR 135
                 8******************98888877777554444 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00047
                 GS-HHHHHH.HHHHHHHHHHHHHTTT-STTTTT-EEEEEESS--HHHHHHHHHHHHHTTSEEEEEESTTTSCT CS
    OTCace_N   8 dlskeeiee.lldlaaelkekvkkekkekllkgktlallFeepStRTrvSfevAakrlGgkvlslseaediql 79 
                 +l+keeie+ + ++ +++ ++++ ++ ++ +k+k +   F++   R  ++f  A+++ G + + + ++ ++++
  CCD24877.1 849 KLTKEEIEQkIKEEQEKISNAPDYTEADEEIKQKLISEAFSNWTRRDLLAFVNACAKFGRDNIDMIKK-SVES 920
                 7899999983445677888888889999*********************************9999844.3322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1918  (0.106978); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 7481.27
//
Query:       CCD24878.1  [L=399]
Description: hypothetical protein NDAI_0E00620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-49  165.9   0.0    1.2e-48  165.4   0.0    1.2  1  GATase           Glutamine amidotransferase class-I
    1.9e-45  153.8   0.0    2.9e-45  153.2   0.0    1.3  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
    3.5e-05   23.7   0.2    0.00096   19.0   0.1    2.9  2  Peptidase_C26    Peptidase C26
  ------ inclusion threshold ------
      0.022   14.5   0.0      0.041   13.7   0.0    1.4  1  DJ-1_PfpI        DJ-1/PfpI family


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.4   0.0   2.6e-52   1.2e-48       2     189 ..     184     364 ..     183     365 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.4 bits;  conditional E-value: 2.6e-52
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.TTTHHHHHHHHCT....STS-EEEETHHHHHHHHHTTTEEEEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.vegkieaikeare....nkiPiLGICLGmQllaiefgrkvvke 95 
                 liD++  v+en++++l+++g++v+v+p+d+ ++ i   + ++dgi++s+Gpg+p+ +e++i+++ke+++     +iPi+GICLG+Qlla+++g+k+ k 
  CCD24878.1 184 LIDCG--VKENIIRCLAARGANVTVLPYDYRIQDI---AHQFDGIFLSNGPGNPEmCEKTIANLKELLNnpkfDDIPIFGICLGHQLLALASGAKTMKL 277
                 89***..***********************99999...569****************************88888************************* PP

                 ECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHHH CS
      GATase  96 kekehhggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnflik 189
                 k ++++ ++++  d        +++++i++++H+y+v+p+ l +++++ ++++ +d++++++i++++p++++QFHPE++ +p ++++lf+++++
  CCD24878.1 278 K-YGNRAHNIPAMD------LTTGQCHITSQNHGYAVDPETLPSDQWKPYFVNLNDNSNEGMIHLTRPIFSTQFHPEAKGGPLDTAVLFDKFFD 364
                 *.************......77889**************5555556********************************************9975 PP

>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.2   0.0   6.5e-49   2.9e-45       2     128 .]       6     143 ..       5     143 .. 0.91

  Alignments for each domain:
  == domain 1  score: 153.2 bits;  conditional E-value: 6.5e-49
  CPSase_sm_chain   2 avLvLedGtvfeGksfg.akeavGEvvfnTgmtGYqeiltDpsYagqilvltypliGnyGv......needves.........ekikvaglvvr 79 
                      a++++++G  f+Gksfg +k+ +GE vf+T+++GY+e++tDpsY+gqilv+t+pliGnyGv      +     +          +++v g+vv+
       CCD24878.1   6 ATFTIKNGPSFQGKSFGaEKSIAGEAVFTTSLVGYPESMTDPSYRGQILVFTQPLIGNYGVpsgeerD-----EfnllkyfesPHVHVVGIVVA 94 
                      567899***********77999***************************************7655430.....245566665589********* PP

  CPSase_sm_chain  80 elseepsnwraeesLsewlkeekipgisgvDTRaLtkklrekgamkgvi 128
                      e++ e+s+w+a esL++w+k+e++ +i+gvDTR++++ lre+g+ +g+i
       CCD24878.1  95 EYAYEYSHWAAVESLASWCKREGVAAITGVDTREIVQYLREQGSSLGRI 143
                      *********************************************9987 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   2.1e-07   0.00096      97     128 ..     245     276 ..     184     315 .. 0.81
   2 ?    0.3   0.0      0.11     5e+02     203     216 .]     336     347 ..     303     347 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.1e-07
  Peptidase_C26  97 LiraalergvPilgiCrGlqllnvalGGtlyq 128
                    L+++    ++Pi+giC+G+qll+ a G ++++
     CCD24878.1 245 LLNNPKFDDIPIFGICLGHQLLALASGAKTMK 276
                    555556679****************9987654 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.11
  Peptidase_C26 203 eakafvlgvQwHPE 216
                    +   ++++ Q+HPE
     CCD24878.1 336 T--RPIFSTQFHPE 347
                    3..57999*****9 PP

>> DJ-1_PfpI  DJ-1/PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   9.1e-06     0.041      48     114 ..     207     273 ..     177     280 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 9.1e-06
                 EE-SEEGGGCTCCG-SEEEE--BHHHHHHHHTSHHHHHHHHHHHH....TT-EEEEETTTHHHHHHTTTTT CS
   DJ-1_PfpI  48 vtvdaslddvkaaeyDalvlpGGragperlrenekvvelvkefae....kgklvaaICagpqlLaaagvlk 114
                 ++ d+ ++d++++ +D + l  G  +pe     ek ++ +ke ++    ++ +++ IC g qlLa a+  k
  CCD24878.1 207 LPYDYRIQDIAHQ-FDGIFLSNGPGNPEMC---EKTIANLKELLNnpkfDDIPIFGICLGHQLLALASGAK 273
                 446999***9998.*******997766655...5556666666551111688************9887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2949.81
//
Query:       CCD24879.1  [L=490]
Description: hypothetical protein NDAI_0E00630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-05   23.9   1.0     0.0003   21.0   0.1    2.3  2  RGS       Regulator of G protein signaling domain


Domain annotation for each model (and alignments):
>> RGS  Regulator of G protein signaling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1     0.027   4.9e+02      14      37 ..      32      56 ..      27     105 .. 0.68
   2 !   21.0   0.1   1.7e-08    0.0003      42     112 ..     221     295 ..     200     301 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.027
                HHHHHHHHTTCT..HHHHHHHHHHHH CS
         RGS 14 lFreFlesefse..enlsFwlaveef 37
                 F +Fl + f+   ++l+Fw++    
  CCD24879.1 32 SFYTFLSQ-FPYaiNYLDFWIDLMAH 56
                58889988.6666899****997554 PP

  == domain 2  score: 21.0 bits;  conditional E-value: 1.7e-08
                 HHHHHHHHHHHHHHHHTSTTST..TSS.TS-HHHHHHHHHHHCSS.STTTTTTHHHHHHHHHHHHHHHHHHHHTS CS
         RGS  42 eqeelkkkakeIyneylapssp..kel.nidkklreelekrleke.qpsrklfeeaqeevfellekdsypkFlks 112
                 + ++l++ a +I + yl++     + l n+++++r +  + +++e + ++++fee+++  f++le d++pkFl++
  CCD24879.1 221 TTKQLLNNALKICSIYLQSPERseRYLtNLPDDIRLKALNLVQNErRHDPQVFEELKSIAFQFLEMDCFPKFLST 295
                 57889999*********86544116678*******99999998887899************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       925  (0.0515924); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3480.49
//
Query:       CCD24880.1  [L=742]
Description: hypothetical protein NDAI_0E00640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.8e-160  532.9   2.0   6.8e-160  532.4   2.0    1.2  1  ChAPs     ChAPs (Chs5p-Arf1p-binding proteins)
     0.0081   16.7   0.1        7.4    7.4   0.0    3.8  3  TPR_6     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.052   14.1   0.7       0.36   11.4   0.1    2.6  3  TPR_19    Tetratricopeptide repeat
      0.068   13.0   0.1        1.8    8.5   0.0    2.6  2  TPR_1     Tetratricopeptide repeat
      0.069   13.3   4.5       0.16   12.1   0.1    3.2  4  TPR_2     Tetratricopeptide repeat
      0.085   13.3   0.4        0.3   11.5   0.4    2.0  1  TPR_17    Tetratricopeptide repeat
       0.15   13.0   0.0         87    4.3   0.0    3.5  3  TPR_14    Tetratricopeptide repeat
       0.32   11.2   3.2        8.3    6.7   0.5    3.2  3  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3
        2.4    8.5   6.1        2.2    8.6   3.1    2.5  3  Vps39_1   Vacuolar sorting protein 39 domain 1


Domain annotation for each model (and alignments):
>> ChAPs  ChAPs (Chs5p-Arf1p-binding proteins)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  532.4   2.0  3.4e-163  6.8e-160       1     395 []     103     516 ..     103     516 .. 0.97

  Alignments for each domain:
  == domain 1  score: 532.4 bits;  conditional E-value: 3.4e-163
                 XXXXEEEEEEEXXXXSXHHHHHHHHHHHHCCSSSSXXXTTSXXXXXECCEEEEEEEETTTTEEEEEEEESSXXEEEEEEETTSXB.....EEXHHHHHH CS
       ChAPs   1 kkeiGtyfyvtGvdtSssasiavylkqlteslseksqlwFgkkktfkvskisyctyNaFskvDvrvevkiPGsvesyvvdergek.....eeatdelWa 94 
                 k+eiGt+fy +GvdtS++++i+++lk+++++++e++q+wFgk+k+f++++is++t+N F+k+Dv+v v+iPG+v+++++d +ge+     +++ d +Wa
  CCD24880.1 103 KGEIGTFFYSLGVDTSDPTAITIFLKKIADLITENPQTWFGKRKNFQIARISLSTWNTFRKCDVNVMVHIPGTVQTFMLDYNGEQlqiehSSQIDLIWA 201
                 579**********************************************************************************888876779***** PP

                 HHHHHHHHHHHHHHHTTTTTTS----TTEEE--GGG--SSS-HHHHHHHTHHHHTTCGGGG---TT-SS--SSSSHHHHHHHHHHHHHT-HHHHHHHHH CS
       ChAPs  95 EtflsgvlRsllladdnadddevqklvetrklnPltsgelekkaelFlkafeklfekgvklgadsevqvptlvnNyLvetllklvrltkrydralelle 193
                 Etf+sgv+Rs++l++dn++++e+q+lvet++++Pltsg+l +++++F+++f+ ++e+g  lg ++  +++t++nNyLvetl  +v+lt+++++++e+le
  CCD24880.1 202 ETFISGVVRSITLMKDNSEEGEIQNLVETLIIDPLTSGQLGDVTNTFIDLFPLVYERGNLLGGPCYASNVTNINNYLVETLSTIVNLTQSINKCREMLE 300
                 *************************************************************************************************** PP

                 HHHTT-GGGHHHHHHHHHHTT-HHHHHHHHHHHH......-SSS-H...........HHHHHHHHHHHHHSS--.HHHHHHHHHHHHH-TT-HHHHHHH CS
       ChAPs 194 kLkeeepevvillarvllladeEvdavkllneel......eeeekd...........aelLllqaefllskkke.elAlevakravksaPsefktWalL 274
                 kL e++pe++++l+r+l+ +d E+da++l++e+l      +    +           ++lL+++aefll+ kk+ + A+ +a++av+ +P+efk+W+lL
  CCD24880.1 301 KLVEKYPEAIVILVRLLFENDLEIDAINLVHEQLeiverqS----EkynnqqvvnyiSALLCVEAEFLLNIKKDfKYAQLIAQKAVNYSPNEFKPWYLL 395
                 **********************************7666541....144566789999*************99999************************ PP

                 HHHHHHTT-HHHHHHHHHT----SS--------SS-------EB---TTSS--TT--------SS---S---HHHHT-TTTT--HHHHHHHHHHHHHHH CS
       ChAPs 275 vkvYikledienALltLNscPmftykekdvlrriapakseddlhlPlpldvvldevselnssevteeqkevdpsLlrlkaanlkstfakaYelLteivk 373
                 +k Y +l+d enAL+tLN+cPm+ ++ek++l+r++p  s+d+lhlPlp+d+vldev++lns ++++e+k+ dp+L++l+a nlkst+++aY+lLteiv+
  CCD24880.1 396 TKAYARLNDPENALVTLNACPMALLREKYTLKRVVPFPSDDSLHLPLPVDAVLDEVTSLNSIDIQNEHKSSDPTLINLPAGNLKSTYQLAYKLLTEIVQ 494
                 *************************************************************************************************** PP

                 HH-HHHHHHHHHHHB-XXXXXX CS
       ChAPs 374 kiGWeeLLkvRskvFvmeeEYr 395
                  +GWe LLk+R+k+FvmeeEY+
  CCD24880.1 495 LTGWELLLKIRTKLFVMEEEYQ 516
                 *********************7 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0037       7.4      17      32 ..     293     308 ..     287     309 .. 0.88
   2 ?    2.2   0.0      0.18   3.6e+02       4      24 ..     393     413 ..     392     415 .. 0.87
   3 ?    2.1   0.0      0.18   3.7e+02       7      25 ..     600     618 ..     599     618 .. 0.93

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0037
                 HHHHHHHHHHHHH-TT CS
       TPR_6  17 dkAlealerlikeYPd 32 
                  k +e+le+l+++YP+
  CCD24880.1 293 NKCREMLEKLVEKYPE 308
                 5899***********7 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAleale 24 
                 y+l ++y +l+d+++Al +l+
  CCD24880.1 393 YLLTKAYARLNDPENALVTLN 413
                 778899***99******9987 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealer 25 
                 +l+ r+lg + +A  a+e+
  CCD24880.1 600 GLCARRLGHYPEAAVAFEK 618
                 89****99********996 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.9   3.9e+03      22      35 ..     304     317 ..     289     330 .. 0.58
   2 ?   11.4   0.1   0.00018      0.36       6      52 ..     370     416 ..     367     424 .. 0.89
   3 ?   -2.5   0.0       3.8   7.6e+03      38      54 ..     606     622 ..     602     633 .. 0.53

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.9
      TPR_19  22 pknaearllLAeal 35 
                  k++ea   L+++l
  CCD24880.1 304 EKYPEAIVILVRLL 317
                 33444444444444 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00018
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 d+  A+ + ++a  ++p+    ++lL +a+  l++++ A  +L+a p
  CCD24880.1 370 DFKYAQLIAQKAVNYSPNEFKPWYLLTKAYARLNDPENALVTLNACP 416
                 6666888899999******************************9976 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.8
      TPR_19  38 lgqldeAealLdalpee 54 
                 lg++ eA  + ++ + +
  CCD24880.1 606 LGHYPEAAVAFEKGLSQ 622
                 55555555555544444 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.15   3.1e+02       9      22 ..     397     410 ..     390     415 .. 0.80
   2 ?    8.5   0.0   0.00088       1.8       8      29 ..     600     621 ..     600     623 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.15
                 HHHHHTT-HHHHHH CS
       TPR_1   9 nayfklgkydeAle 22 
                  ay +l++++ Al 
  CCD24880.1 397 KAYARLNDPENALV 410
                 69**********96 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00088
                 HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekALe 29 
                 G++ ++lg y eA  ++ek L+
  CCD24880.1 600 GLCARRLGHYPEAAVAFEKGLS 621
                 89*****************986 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.5   4.9e+03      19      33 ..     294     308 ..     292     309 .. 0.86
   2 ?   -3.2   0.1       6.7   1.3e+04      15      33 ..     369     387 ..     368     387 .. 0.75
   3 ?    1.1   0.0      0.27   5.4e+02       4      21 ..     392     409 ..     389     415 .. 0.83
   4 ?   12.1   0.1   8.2e-05      0.16       6      29 ..     598     621 ..     595     623 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.5
       TPR_2  19 eAleafekAleldPn 33 
                 +++e +ek +e +P+
  CCD24880.1 294 KCREMLEKLVEKYPE 308
                 789999******997 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 6.7
       TPR_2  15 gdyeeAleafekAleldPn 33 
                 +d++ A    +kA+ + Pn
  CCD24880.1 369 KDFKYAQLIAQKAVNYSPN 387
                 5666677778999999987 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.27
       TPR_2   4 lynlGlayyklgdyeeAl 21 
                 +y l +ay++l+d+e Al
  CCD24880.1 392 WYLLTKAYARLNDPENAL 409
                 7777789*********98 PP

  == domain 4  score: 12.1 bits;  conditional E-value: 8.2e-05
       TPR_2   6 nlGlayyklgdyeeAleafekAle 29 
                 + Gl++++lg+y eA+ afek l+
  CCD24880.1 598 AFGLCARRLGHYPEAAVAFEKGLS 621
                 5699*****************986 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   0.00015       0.3       2      32 ..     378     408 ..     377     409 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00015
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                  +ka+ + Pn ++++++L +++++++d++ A
  CCD24880.1 378 AQKAVNYSPNEFKPWYLLTKAYARLNDPENA 408
                 69*************************9988 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.13   2.6e+02      20      41 ..     295     316 ..     290     319 .. 0.87
   2 ?    4.3   0.0     0.044        87       4      26 ..     392     414 ..     389     418 .. 0.89
   3 ?    0.7   0.0      0.64   1.3e+03      11      30 ..     603     622 ..     596     628 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.13
      TPR_14  20 AiallrralalaPddaeawlll 41 
                  +++l+++++++P+  +++ +l
  CCD24880.1 295 CREMLEKLVEKYPEAIVILVRL 316
                 689***********99999887 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.044
      TPR_14   4 llalaeallalGdpdeAiallrr 26 
                 +++l +a+++l dp+ A+  l++
  CCD24880.1 392 WYLLTKAYARLNDPENALVTLNA 414
                 99***************988876 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.64
      TPR_14  11 llalGdpdeAiallrralal 30 
                  ++lG + eA+ ++++ l++
  CCD24880.1 603 ARRLGHYPEAAVAFEKGLSQ 622
                 46788888888888888775 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.8   3.6e+03      67      80 ..     300     314 ..     295     321 .. 0.81
   2 ?    6.7   0.5    0.0042       8.3      37      81 ..     369     414 ..     325     415 .. 0.81
   3 ?    3.1   0.0     0.055   1.1e+02      55      81 ..     592     618 ..     571     619 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.8
                 HHT.T-HHHHHHHH- CS
      ANAPC3  67 lkL.kkyeeAiaaLe 80 
                  kL +ky eAi +L 
  CCD24880.1 300 EKLvEKYPEAIVILV 314
                 577799999999885 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0042
                 T-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  37 gqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 +++k A+ +++ka +  ++  + +yl+ +++  L+  e A+ +L +
  CCD24880.1 369 KDFKYAQLIAQKAvNYSPNEFKPWYLLTKAYARLNDPENALVTLNA 414
                 4599999999999888888889999999999999999999988876 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.055
                 -HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  55 slgcrylfAqcllkLkkyeeAiaaLek 81 
                 s   +  f+ c+  L++y eA  a+ek
  CCD24880.1 592 STVEWEAFGLCARRLGHYPEAAVAFEK 618
                 5555677999************99997 PP

>> Vps39_1  Vacuolar sorting protein 39 domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.3   6.5e+03      44      77 ..      39      72 ..      36      83 .. 0.69
   2 ?    8.6   3.1    0.0011       2.2       9      92 ..     277     356 ..     272     375 .. 0.76
   3 ?   -2.9   0.0       4.1   8.1e+03      57     101 ..     628     675 ..     622     680 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.3
     Vps39_1 44 eLidlYygkklheeALeLlkeladedeedeedss 77
                 Li++  + + h+ + +  ++l++++++++++s 
  CCD24880.1 39 TLIKYLPSSSSHQGSTNAANHLSSTNSSNKDQSD 72
                5888888888999999888999886444443333 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0011
     Vps39_1   9 YlktkpklvgpLlrleNaCdlkdveeiLkkekkykeLidlYygkklheeALeLlkeladedeedeedsslkgeketiiqylqkl 92 
                 Yl  + + + +L +  N+C     + + k  + ++ L+ l  ++ l+ +A++L +e+ +      e +s+k +++++++y + l
  CCD24880.1 277 YLVETLSTIVNLTQSINKCREMLEKLVEKYPEAIVILVRLLFENDLEIDAINLVHEQLE----IVERQSEKYNNQQVVNYISAL 356
                 7777778899999999999855444444667999************************9....344444455555568887766 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.1
     Vps39_1  57 eALeLlkeladedeedeedsslkgeket...iiqylqklseedldlil 101
                 +A +L++  ++e ++  ++s+l + + t   i++  ++l+++ +dl  
  CCD24880.1 628 SAQQLMNYCVNERQRIINQSNLPNCDMTssqIVSKISELDSTIIDLCV 675
                 566666666666555555555544443344477777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 5411.70
//
Query:       CCD24881.1  [L=506]
Description: hypothetical protein NDAI_0E00650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0016   18.5   0.3     0.0069   16.5   0.0    2.2  2  Acyltransf_C     Acyltransferase C-terminus
  ------ inclusion threshold ------
      0.042   13.9   3.1       0.11   12.6   0.1    2.7  2  RB_B             Retinoblastoma-associated protein B domain
      0.095   12.3   0.0       0.29   10.8   0.0    1.8  1  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransf_C  Acyltransferase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.2     7e+03      43      74 .]     174     204 ..     167     204 .. 0.61
   2 !   16.5   0.0   1.2e-06    0.0069      10      45 ..     461     497 ..     457     498 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.2
  Acyltransf_C  43 lleeFyktgtFepgkevkiprrkksllvflfW 74 
                    l  + ++ +   +k  k +r   ++l+f++W
    CCD24881.1 174 SLVRYTNKREV-INKLWKENRTIVPILNFISW 204
                   55555555555.44555556777788899888 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.2e-06
  Acyltransf_C  10 vhiyvrriple.evPedeeelaeWlhelfeeKDklle 45 
                   + + + + ++   +P ++++l++Wl++++ +KDkl++
    CCD24881.1 461 IMVQISKCKMApLLPLKDKKLERWLEQRWGHKDKLIN 497
                   55667777787789********************975 PP

>> RB_B  Retinoblastoma-associated protein B domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   1.8e-05      0.11      32      72 ..      32      72 ..      20      83 .. 0.90
   2 ?   -0.4   0.1      0.18   1.1e+03       4      59 ..     270     324 ..     268     327 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.8e-05
        RB_B 32 ekiwtlfehvlveetellkdRhlDqillcavYvvakvtkee 72
                ++i+ l++++l ++  l+  R +  i+ c +Y  +kv k++
  CCD24881.1 32 SRIFILLTYILLHSIVLIARRIITSIITCPIYRRVKVFKRN 72
                78**********************************99765 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.18
        RB_B   4 lffrkvyklaavrlrdLcerLklsselrekiwtlfehvlveetellkdRhlDqill 59 
                 +f+ k+y++ + r r+ ++ +++     ++i ++ ++ +++et+   + + D+ill
  CCD24881.1 270 IFVTKFYNVLYPRFRNFITVVNCFGF-VQNIKKMRHNYIFNETKQYLNEKFDKILL 324
                 68888888888888888877755443.34455555556666666666666666665 PP

>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.8e-05      0.29      16     100 ..     151     250 ..     134     290 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 4.8e-05
  Acyltransferase  16 ailvaNHqsylDvlllwlllyksn.gp....rnvviiakkellsi.pllgflmr..llgfifidR..........ksnaraagslenisellee 91 
                       +l+aNH+s  D+ l ++l ++++ ++    r+v   + ke  +i p+l+f+++      + + +          ++na+ ++   + + ++++
       CCD24881.1 151 TLLIANHRSVNDYALVNYLIQDESlVRytnkREVINKLWKENRTIvPILNFISWgkI---FNFPKisllknivlkDENAYLKEDEFEDHLMTNN 241
                      599*****************9988666766544444444444555466666665331...2222234455666633444444333333337777 PP

  Acyltransferase  92 gklvviFPE 100
                      +++  iFPE
       CCD24881.1 242 NQVYAIFPE 250
                      777888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 3271.03
//
Query:       CCD24882.1  [L=211]
Description: hypothetical protein NDAI_0E00660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-41  139.5   0.0    6.6e-41  139.1   0.0    1.1  1  CybS      CybS, succinate dehydrogenase cytochrome B small su


Domain annotation for each model (and alignments):
>> CybS  CybS, succinate dehydrogenase cytochrome B small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   0.0   3.7e-45   6.6e-41      19     133 .]      80     198 ..      63     198 .. 0.91

  Alignments for each domain:
  == domain 1  score: 139.1 bits;  conditional E-value: 3.7e-45
        CybS  19 ndaakvpepsksegsyhwtleRivavglvpltvvplva.gs...lspvlDavlavlllihshlgfesciiDYipkrvygklhklahylLalgtvlslvG 113
                  + ++ p+ps++egsyh ++e+i +++l+pl +vp+v+ ++   + p+lD++la+++li++++gf+scii Y+pk+++ ++h++a+ylL++++ lsl+G
  CCD24882.1  80 PKTFTLPKPSQVEGSYHEEYEKIAKYSLLPLSLVPFVIsMAggvVPPLLDTALATTFLIYIQYGFTSCIIEYLPKEKFHRWHNAAKYLLYSFSSLSLYG 178
                 466799******************************9943355569***************************************************** PP

        CybS 114 lYeletednGltelvkklws 133
                 +Y+lete+nGl++l++klw+
  CCD24882.1 179 IYQLETENNGLIDLISKLWQ 198
                 *******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1596.43
//
Query:       CCD24883.1  [L=353]
Description: hypothetical protein NDAI_0E00670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-32  109.3   9.1    9.9e-16   57.8   5.2    2.3  2  Cauli_VI  Caulimovirus viroplasmin
    3.1e-31  108.5   0.5    6.9e-31  107.4   0.0    1.8  2  RNase_H   RNase H


Domain annotation for each model (and alignments):
>> Cauli_VI  Caulimovirus viroplasmin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   5.2   1.1e-19   9.9e-16       2      44 .]       6      48 ..       5      48 .. 0.98
   2 !   53.2   0.1     3e-18   2.7e-14       1      44 []     108     154 ..     108     154 .. 0.93

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 1.1e-19
    Cauli_VI  2 yYAVakGrepgiYttWdecqkqvkgfpgakyKsFktraeAeaf 44
                +Y V +G + g++++W +c++qvkg++ga +K+F++++eA++f
  CCD24883.1  6 FYGVNQGFQRGVFYSWHDCEQQVKGYKGAIFKKFNSFEEAKNF 48
                9****************************************99 PP

  == domain 2  score: 53.2 bits;  conditional E-value: 3e-18
    Cauli_VI   1 kyYAVakGr...epgiYttWdecqkqvkgfpgakyKsFktraeAeaf 44 
                 k+YAV++G+   +  i+++W+ec++++ + +g ++KsF+++++Ae+f
  CCD24883.1 108 KFYAVKSGNptvQSMIFRSWPECKSYIYRQKGLSFKSFDSLEDAENF 154
                 9********655555******************************99 PP

>> RNase_H  RNase H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.3      0.37   3.3e+03      29      45 ..      41      60 ..      24      78 .. 0.62
   2 !  107.4   0.0   7.7e-35   6.9e-31       3     142 ..     192     350 ..     190     351 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.37
                .....EEEEEEECCCCHHHH CS
     RNase_H 29 g...arnisapleeaqtnnr 45
                    a+n+++ ++  ++nnr
  CCD24883.1 41 SfeeAKNFAHGTSSNNSNNR 60
                23334466666666666665 PP

  == domain 2  score: 107.4 bits;  conditional E-value: 7.7e-35
                 SEEEEEEEEEECTTTCE.EEEEEECTT..E..EEEEEEC.CCCHHHHHHHHHHHHHHHTT......SCSEEE..EEES-HHHHHHHHCCCHHH....HH CS
     RNase_H   3 avvvYtDGsclgnpgeg.gagavlykegar..nisaple.eaqtnnraELsAvieaLkal.....ksdekvn..iytDSkYvvkgitqwvhrw....kk 86 
                 + +vY+DGs+lgn + g +ag+++ +e++   nis +l+ +aqtnnr E++Av eaLka      +s++k+n  i+tDS+Yv k ++++ +++    k 
  CCD24883.1 192 KCNVYCDGSSLGNGKYGaRAGYGVFFETQPslNISDRLRiGAQTNNRGEIQAVSEALKAIwkilsTSPNKLNfqIITDSEYVAK-LLNDRYMTysidKI 289
                 578**********999999***6655653346**************************9756665566888888**********.77777777788766 PP

                 TTSSSETTSSBHTT.....HHHHHHHHHCHC.SSEEEEEE-SCCSSSTHHHHHHHHHHHHHH CS
     RNase_H  87 nawkttseqkpvkn.....kdlaellkelak.kkkvqlkwvkgHaGvpkgNemaDrlAkeaa 142
                 +  ++ +   p+ +     k+++e++ ++++ k +++++wvkgHaG+ +gNemaD+lA+++a
  CCD24883.1 290 HILPNHDLIVPLLAyftcvKKYYEINADFFAnKGNFKIEWVKGHAGH-YGNEMADELARRGA 350
                 66677777788888888998899998888776999************.9**********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       527  (0.0293937); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2653.90
//
Query:       CCD24884.1  [L=1287]
Description: hypothetical protein NDAI_0E00680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-35  122.1   0.9    8.5e-35  120.1   0.1    2.5  2  Membr_traf_MHD  Munc13 (mammalian uncoordinated) homology dom
    1.3e-11   44.7   0.0    3.1e-11   43.5   0.0    1.7  1  C2              C2 domain
    1.1e-06   27.6   0.1    2.6e-06   26.3   0.1    1.6  1  DUF810          Plant family of unknown function (DUF810)
  ------ inclusion threshold ------
          7    7.3   8.8         24    5.6   0.3    3.7  4  EST1            Telomerase activating protein Est1


Domain annotation for each model (and alignments):
>> Membr_traf_MHD  Munc13 (mammalian uncoordinated) homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.99   4.4e+03       5      18 ..     682     695 ..     679     782 .. 0.72
   2 !  120.1   0.1   1.9e-38   8.5e-35       1     146 [.    1036    1169 ..    1036    1171 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.99
  Membr_traf_MHD   5 PLmdyLdsnLsila 18 
                      ++++L+++Ls++ 
      CCD24884.1 682 DIFKMLNESLSMFL 695
                     67888888888874 PP

  == domain 2  score: 120.1 bits;  conditional E-value: 1.9e-38
  Membr_traf_MHD    1 dvlrPLmdyLdsnLsilaqalektvLkrvlkelWkvvlnalekllLPplsdakskk....kssslwenanaakkleslsklllsmvreevsgf 89  
                      d+l PL+dyL++nL il+++l++t+L  ++ ++W+ +l++++ llLP+ls++++k+    ++ss+w+++                 + +++g+
      CCD24884.1 1036 DALLPLFDYLNANLGILSSQLSETLLLAIMSKAWSEILTTADILLLPSLSSSDHKHrlrsARSSIWNSS-----------------TLDIVGY 1111
                      689************************************************998653333333333222.................3359*** PP

  Membr_traf_MHD   90 eksLtpkevevleaaLdtlk.dfFhagGeGlkkeaLkseelqsLllalslYdqstdeL 146 
                      +++Ltp+e ++++++L++l  +fFh++G+Gl++++  ++ +q+L++++++Y+ s++ L
      CCD24884.1 1112 GRPLTPLEQATIFMWLSNLGiEFFHNDGQGLPMTEVENAYYQNLKKIPHFYEMSVRDL 1169
                      ******************************************************9988 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   6.9e-15   3.1e-11       4      92 ..     850     948 ..     847     959 .. 0.89

  Alignments for each domain:
  == domain 1  score: 43.5 bits;  conditional E-value: 6.9e-15
                 EEEEEEEESSSSSSTTSSCEEEEEEEE..ECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECS.....SSTEEEEEEEEEEGHH...HH CS
          C2   4 evtvieAknLpnkdkkgssdpyvkvsl..dgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndr.....lskddfiGkveiplst...ll 92 
                 ++++ieAk+++   k+g s++  +++   ++k++ +T++i++++nP+W+e++++ v+ +e+++L ++V+++ +     +++d++ Gk+++ ls+   l+
  CCD24884.1 850 TIRIIEAKDIKGFSKSGLSNAMLSLQDmkQRKEISCTKIISKTTNPIWDEEVELMVPYNEKRELLLTVWHHPTskfksVGGDEICGKAQLILSKkkfLD 948
                 799*******99999***********9999**********9999**************************88777787899********9998855544 PP

>> DUF810  Plant family of unknown function (DUF810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   5.7e-10   2.6e-06     525     612 ..     638     728 ..     627     740 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 5.7e-10
      DUF810 525 vianlvkkWvkerlkklkewveraleqEtWePkskqeryaqSavellriieetvdeffelpvpmk...eellqdLldgldkllqeYlskva 612
                    + + +   +  +k +e+++ +l++E+WeP   + ry+ S+v+++++ +e +  f++++   +   +++l  Ll+ ++  l  Y+++v 
  CCD24884.1 638 YFEKYLVELCGTTCSKFLEVITSSLQKEKWEPINAEIRYSYSVVDIFKMLNESLSMFLNFEWGNEyqiSKILTMLLKSFSDGLYVYTENVL 728
                 55556666667778999*******************************************9965511245677777788888888888775 PP

>> EST1  Telomerase activating protein Est1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.35   1.6e+03      41      72 ..     504     536 ..     499     618 .. 0.59
   2 ?    5.6   0.3    0.0053        24      12      89 ..     678     749 ..     675     769 .. 0.63
   3 ?   -2.5   0.1       1.7   7.4e+03      15      68 ..     801     850 ..     788     892 .. 0.60
   4 ?    4.2   0.1     0.014        63      40     124 ..    1146    1250 ..    1129    1254 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHH.HHHHHHHHHHHHHH-B-HTT CS
        EST1  41 lklklvkflksa.igfYqsliqrllsefelels 72 
                 +++kl+k   +a  +fY+sl+++  +  ++e++
  CCD24884.1 504 WSKKLKKTVHEAsTQFYFSLLEKVPKGPDIEFQ 536
                 566677666665158999999998877666433 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHHHHHH----.---H.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-B-HTT............-.... CS
        EST1  12 yevikllkkqlknldsapk.kkkkpvekrklklklvkflksaigfYqsliqrllsefelelssvlkvilksktklpeke 89 
                 y+v++ +k +   l+   + + ++  + +k+ ++l k + ++  +Y + ++rl++  +  l+sv +    ++t+++++ 
  CCD24884.1 678 YSVVDIFKMLNESLSMFLNfEWGNEYQISKILTMLLKSFSDGLYVYTENVLRLIQV-D--LNSVES----KSTSNEARN 749
                 6666666666666664333544455699999*************************.5..773333....333322211 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHH-------H.HHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHH-B CS
        EST1  15 ikllkkqlknldsapkkkkkpvekrklk...lklvkflksaigfYqsliqrllsefe 68 
                 i+ +k+ l++l+        +v+ +k++   ++++k  k+  ++ ++ +++l + + 
  CCD24884.1 801 IEKMKSNLNDLED-------RVQPEKITkfiNHYEKNHKDLKEIANEQVKKLHHLYT 850
                 6666666666662.......2333333333355555555555555555555555555 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.014
                  HHHHHHHHHHHHHHHHHHHHHHHHHHH....................-B-HTT............-.....---------TTB--TTSHHH.HHHHH CS
        EST1   40 klklklvkflksaigfYqsliqrllse....................felelssvlkvilksktklpekessekseteseeeksslssseqksavlk 116 
                  ++++++++ lk+  +fY+  +  l +                     ++++++++ + ++++kt++++ ++ ++++ ++e +k + ++ eq+ ++lk
  CCD24884.1 1146 EVENAYYQNLKKIPHFYEMSVRDLKAAtndlmtdyvkhlkliysnknYGTSVKRIGTTVERQKTIMANATKLKRQQIREEIQKEQVDPLEQSVEALK 1242
                  7788888888888889988888888885555555555555554444444355566666666888887777776666777777888888888899999 PP

                  HHHHHHHH CS
        EST1  117 lvhrcLiy 124 
                  +v r Li 
  CCD24884.1 1243 IVLRILIT 1250
                  99999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1262  (0.0703888); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.88u 0.28s 00:00:01.16 Elapsed: 00:00:00.45
# Mc/sec: 8589.55
//
Query:       CCD24885.1  [L=464]
Description: hypothetical protein NDAI_0E00690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-20   71.7   0.1    3.4e-20   71.7   0.1    2.7  3  SWIB      SWIB/MDM2 domain
    0.00015   21.6   0.0    0.00064   19.6   0.1    2.1  2  DEK_C     DEK C terminal domain
  ------ inclusion threshold ------
       0.05   12.9   1.1       0.12   11.7   1.1    1.6  1  CorA      CorA-like Mg2+ transporter protein


Domain annotation for each model (and alignments):
>> SWIB  SWIB/MDM2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.51     3e+03      22      34 ..     109     121 ..      90     130 .. 0.64
   2 ?    0.1   0.2      0.12   7.4e+02      35      56 ..     135     156 ..     131     162 .. 0.80
   3 !   71.7   0.1   5.7e-24   3.4e-20       2      74 .]     177     249 ..     176     249 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.51
        SWIB  22 evvkklweYIken 34 
                 ++  k+ +Y k++
  CCD24885.1 109 DIDDKIEKYLKKH 121
                 5555666666665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.12
        SWIB  35 nLqdpedkreilcDekLkklfg 56 
                 +L++++ k + + D+kL ++ +
  CCD24885.1 135 ELKKKNRKAILKLDKKLDRIEQ 156
                 6888888888899****99865 PP

  == domain 3  score: 71.7 bits;  conditional E-value: 5.7e-24
        SWIB   2 pvklspeLaellgekelsrpevvkklweYIkennLqdpedkreilcDekLkklfggkdrvkffempkllkkHl 74 
                 ++ l ++L+++lge+elsr++ vk++w YIk+n+Lq p+d+re l D+kLk+lf+g +r++++ ++k+++k++
  CCD24885.1 177 KYLLLEPLKSFLGESELSRQDTVKRIWTYIKQNKLQSPSDRREDLWDNKLKSLFQGYQRITVPIVAKIVSKYM 249
                 577889****************************************************************996 PP

>> DEK_C  DEK C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   1.1e-07   0.00064       9      54 .]      73     118 ..      71     118 .. 0.93
   2 ?   -2.2   0.0       0.7   4.2e+03      42      54 .]     331     343 ..     328     343 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.1e-07
       DEK_C   9 aireiLreaDLdtvTkkkvReqLeeklgvd.LsekKafIkalIdeil 54 
                  i +iL++ ++ + ++k vRe+Lee +      e  ++I+++I+++l
  CCD24885.1  73 SINAILATGNPKKQSSKRVREALEEIF-LFnFEEANEDIDDKIEKYL 118
                 699************************.877************9986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.7
       DEK_C  42 kKafIkalIdeil 54 
                 k ++I +++de+l
  CCD24885.1 331 KTDYISDVVDEEL 343
                 6799*****9987 PP

>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.1   1.9e-05      0.12      87     179 ..      66     159 ..      63     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.9e-05
        CorA  87 plealdevikrlk.deggkpkspgellyrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvklrralapnrevlkrlla 179
                 +l+++   i+++    + k++s++++ ++l + ++ +++e+ e+++++++++ +  +++++++i+ +l++l+++  k    l  + + ++++++
  CCD24885.1  66 DLPSFSSSINAILaTGNPKKQSSKRVREALEEIFLFNFEEANEDIDDKIEKYLKKHRNRNRNQIRLTLSELKKKNRKAILKLDKKLDRIEQRKN 159
                 678888888888877778888888888888889999************************************9987777776666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1668  (0.0930336); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3370.56
//
Query:       CCD24886.1  [L=203]
Description: hypothetical protein NDAI_0E00700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-58  197.6   4.7    1.3e-58  197.4   4.7    1.0  1  RRS1      Ribosome biogenesis regulatory protein (RRS1)


Domain annotation for each model (and alignments):
>> RRS1  Ribosome biogenesis regulatory protein (RRS1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.4   4.7   7.3e-63   1.3e-58       1     162 []      18     199 ..      18     199 .. 0.94

  Alignments for each domain:
  == domain 1  score: 197.4 bits;  conditional E-value: 7.3e-63
                 --EEEGGGTEEEE-S-----TT.....-HHHHHHHHHHHHHHHHHHHHHHS-EEEE.TE...........EEEE-----S----SS-S---XXXXXXXX CS
        RRS1   1 plefdlgnLlafdpnpldeesl...k.ekeeelkelardnvqlLinqllslptesteeg...........vlakLpepttkLPRekplPkpkplTkWek 84 
                 p+++dlgnL +fd+n +d++++   + ++ee++k+++rdnvqlLinqllslp+++t+++           +l++Lp+p t+LPRekplPk+k++TkWek
  CCD24886.1  18 PVNYDLGNLSVFDSNFMDKNDFdtsNgKREENIKNMTRDNVQLLINQLLSLPIKTTTDStggsngqsssmTLLQLPAPITELPREKPLPKAKAQTKWEK 116
                 689****************999987689****************************985589*******99**************************** PP

                 XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXX CS
        RRS1  85 FAkkKGik.kkkekrsklvyDeetkeWvprwGykgankekekdwlvevkd.....dee.edpfekkrkekkervaknekqelkNk 162
                 FA++KGi+ k+k    k+vyDe+++eWvp+wGy+g nk+ +++wlvev+d     d+e  dp++ +r+e+k+ ++knekq+++N+
  CCD24886.1 117 FAATKGIQpKAK--TGKMVYDEASGEWVPKWGYRGNNKKLDDQWLVEVDDkvkgtDNElIDPRTLNRAERKRLIKKNEKQQKRNL 199
                 *******87777..67*********************************77777644459***********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1477.24
//
Query:       CCD24887.1  [L=105]
Description: hypothetical protein NDAI_0E00710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-42  143.0   0.4    2.7e-42  142.8   0.4    1.0  1  S10_plectin     Plectin/S10 domain
  ------ inclusion threshold ------
      0.018   14.8   0.2      0.028   14.2   0.2    1.3  1  DUF4364         Domain of unknown function (DUF4364)
      0.027   14.4   0.2      0.048   13.6   0.2    1.4  1  HTH_45          Winged helix-turn-helix
      0.055   13.8   0.0       0.07   13.4   0.0    1.3  1  MsyB            MsyB protein
      0.056   13.3   0.1      0.062   13.2   0.1    1.1  1  tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codo
       0.14   12.2   0.2       0.14   12.2   0.2    1.8  2  PadR            Transcriptional regulator PadR-like family


Domain annotation for each model (and alignments):
>> S10_plectin  Plectin/S10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.4     9e-46   2.7e-42       1      91 [.       3      93 ..       3      95 .. 0.98

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 9e-46
                 --HCHHHHHHHHCCCCSCEEEE--SS----SSS---HHHHHHHHHHCCCCTSEEEEEETTEEEEEE-HHHHHHHHHHHXXXXSXHHHHHXX CS
  S10_plectin  1 ipkknrkaiyeylfkegvlvakkdfelkkheelnvpnlqvikalqSLksrgyvkeqfaWrhyYytLtneGieylreylhlpeeivPatlkk 91
                 +pk++r++i++ylf+egv+vakkdf+++khee++ +nl+vikalqSL+s+gyvk+qf+W++yYytLt+eG+e+lreyl+lpe+ivP t+ +
   CCD24887.1  3 MPKEDRTKIHRYLFQEGVVVAKKDFNQPKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEFLREYLNLPEHIVPGTYIQ 93
                 8**************************************************************************************9876 PP

>> DUF4364  Domain of unknown function (DUF4364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.2   9.2e-06     0.028      35      73 ..      41      79 ..      32      94 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.2e-06
     DUF4364 35 dlqqalseLvesglieeeekenktlykiTekGketlelf 73
                ++ +al+ L+++g+++++ + +  +y++Te+G e l++ 
  CCD24887.1 41 YVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEFLREY 79
                67799*************99*************999875 PP

>> HTH_45  Winged helix-turn-helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   1.6e-05     0.048      38      72 ..      44      82 ..      36      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
      HTH_45 38 kYLdmLvekgli....kkskekYvlTekGlelleklkel 72
                k L+ L++kg++    + +   Y+lTe+G e+l+++ +l
  CCD24887.1 44 KALQSLTSKGYVktqfSWQYYYYTLTEEGVEFLREYLNL 82
                5689999****9654344667899**********99776 PP

>> MsyB  MsyB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   2.3e-05      0.07      31      84 ..       7      60 ..       3      80 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
        MsyB 31 eqlslqkyvlqdGdilwqaeflededddgealallsgeaaqaifdgdydeielr 84
                ++ ++ +y++q+G ++ + +f + +++++++ +l+  +a q++  + y ++++ 
  CCD24887.1  7 DRTKIHRYLFQEGVVVAKKDFNQPKHEEIDTKNLYVIKALQSLTSKGYVKTQFS 60
                567899*************************************99999877654 PP

>> tRNA-synt_1c_C  tRNA synthetases class I (E and Q), anti-codon binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.1e-05     0.062      30      93 ..       2      64 ..       1      81 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.1e-05
  tRNA-synt_1c_C 30 lhpknpelgtrkvpfskeiyiereDakrlkpgeevrLkelynikveevekdesgevte.lkleyd 93
                    l+pk+   + +++ f++ +++ ++D+++ k  ee+  k+ly+ik+ +  ++ +g v++ ++ +y 
      CCD24887.1  2 LMPKEDRTKIHRYLFQEGVVVAKKDFNQPK-HEEIDTKNLYVIKALQSLTS-KGYVKTqFSWQYY 64
                    6799999999****************9997.6************9666444.4444433555555 PP

>> PadR  Transcriptional regulator PadR-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   4.5e-05      0.14      33      75 .]      39      78 ..      17      78 .. 0.81
   2 ?   -2.1   0.1       1.3   3.9e+03      48      62 ..      93     105 .]      90     105 .] 0.57

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.5e-05
                HHH..HHHHHHHHTTSEEEEEE-STSSS-EEEEEESHCCCHHHHH CS
        PadR 33 slY..paLkrLekeglveseweesgegpprkyYrlTdaGrrelae 75
                +lY  +aL++L  +g+v+++ +      +  yY+lT++G + l+e
  CCD24887.1 39 NLYviKALQSLTSKGYVKTQFSW-----QYYYYTLTEEGVEFLRE 78
                4553368************9987.....589********998875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
                 EEEEE-STSSS-EEE CS
        PadR  48 eseweesgegpprky 62 
                 + + ++  ++p+r+y
  CCD24887.1  93 QDRSQT--QRPQRRY 105
                 444444..6777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 804.74
//
Query:       CCD24888.1  [L=326]
Description: hypothetical protein NDAI_0E00720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-17   63.8   0.9    1.2e-17   63.8   0.9    2.8  4  Mpv17_PMP22  Mpv17 / PMP22 family


Domain annotation for each model (and alignments):
>> Mpv17_PMP22  Mpv17 / PMP22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1      0.53   9.6e+03       7      22 ..      41      56 ..      37      74 .. 0.51
   2 ?   -2.7   2.6      0.42   7.5e+03      43      60 ..     196     213 ..     183     219 .. 0.53
   3 ?   -3.3   0.0      0.62   1.1e+04      28      38 ..     236     246 ..     229     248 .. 0.76
   4 !   63.8   0.9   6.8e-22   1.2e-17       3      62 .]     254     313 ..     252     313 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.53
  Mpv17_PMP22  7 sleeikeelkekfwpt 22
                 s+++ik+ ++ k + +
   CCD24888.1 41 SISQIKNFFRLKVFRI 56
                 4555555444444443 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.42
  Mpv17_PMP22  43 lkfRvlfvnvvslgWnty 60 
                    f+  f++ +++ W  +
   CCD24888.1 196 FMFWGFFISNFQVPWYRF 213
                  444444444444444433 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 0.62
  Mpv17_PMP22  28 kvWppaqlinF 38 
                   v  p+ql+ F
   CCD24888.1 236 LVYSPVQLYYF 246
                  57789999887 PP

  == domain 4  score: 63.8 bits;  conditional E-value: 6.8e-22
  Mpv17_PMP22   3 legksleeikeelkekfwptlkanwkvWppaqlinFyfvPlkfRvlfvnvvslgWntyLS 62 
                  +e  + +++k ++++ +++tl  n+ +Wp++q+inF ++P+kf+v+f + v+++Wn++LS
   CCD24888.1 254 IEKGNADTFKIKIRSIYISTLGCNYLLWPAVQFINFLLMPKKFQVPFSSSVGVLWNCFLS 313
                  67778899999************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2642.68
//
Query:       CCD24889.1  [L=1517]
Description: hypothetical protein NDAI_0E00730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-36  123.0   0.1    2.4e-35  121.4   0.1    1.9  1  P5-ATPase      P5-type ATPase cation transporter
    1.3e-29  103.0   0.0    2.6e-29  102.0   0.0    1.5  1  E1-E2_ATPase   E1-E2 ATPase
    1.5e-14   54.8   0.0    3.4e-07   30.8   0.0    3.4  3  Hydrolase      haloacid dehalogenase-like hydrolase
    2.2e-05   24.5   0.0    4.8e-05   23.4   0.0    1.6  1  Cation_ATPase  Cation transport ATPase (P-type)
     0.0027   17.5   0.1        5.3    6.7   0.0    3.7  4  Hydrolase_3    haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> P5-ATPase  P5-type ATPase cation transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.1   6.6e-39   2.4e-35       1     125 []     357     489 ..     357     489 .. 0.92

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 6.6e-39
   P5-ATPase   1 edleieiaGyrtsrwrlalyilgciltlGlllLlfrWlPewrvkltgkpcpLkeadvvliedefgelsvkkvrkleyerplstvfsseqeegeekeies 99 
                 edl + iaGy+ts++r+ +y l+cilt+Gll+LlfrWlP ++v ++g++ pL +a++v++e+efg++ ++++++ +y+rp+st+++ +++e+e++++ +
  CCD24889.1 357 EDLVVGIAGYKTSKIRKQVYNLFCILTGGLLYLLFRWLPTYKVLFIGSKVPLGRAEWVILENEFGDFDIQSIDRRWYNRPISTLLPIDDKEQENNDEVY 455
                 79999********************************************************************************77777666555555 PP

   P5-ATPase 100 kese........ekdpelqqlryfdyryiryvwn 125
                 ++++        e++p+++ l +f+yryi+++++
  CCD24889.1 456 NRHHyhhyhhvnENNPNIPILISFKYRYITFIYS 489
                 5555677999*9********************96 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   7.3e-33   2.6e-29       7     181 .]     607     813 ..     603     813 .. 0.96

  Alignments for each domain:
  == domain 1  score: 102.0 bits;  conditional E-value: 7.3e-33
                   EEEE-TTS-EEEEGGG--TTSEEEEET..T-B--SEEEEEEE-SEEE-TTTS---S-EE-.......................G-TTEE-TT-EEEE CS
  E1-E2_ATPase   7 akvirdgteeeidakelvpGDivllka..gdrvpaDgrivegsaevdesaLTGEslpvek.......................ekgdmvfsGtvvvs 78 
                    +v+rd+ +++i++++lvpGDi ++      + p+D ++++g + v+es+LTGEs+pv+k                         ++ +f Gt +++
    CCD24889.1 607 IRVFRDEFWTTINSADLVPGDIYEISDpsLTIFPCDSILLSGDCIVNESMLTGESVPVSKspasqdtlyqliddfqnvqisnfVSKSFLFNGTGIIR 703
                   6899******************99986436788*********************************************999888************* PP

                   .......-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHH CS
  E1-E2_ATPase  79 .......geakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavp 168
                            a a V++tg +t+ g ++r++  ++++ +++ +   k+++v+++++l+ + + ++ ++ +g + ++++lral+++++++P+aLp++++
    CCD24889.1 704 ariphgqSAALAMVVRTGFSTTKGSLVRSMVFPRPTGFKFYQDSFKYIGVMAIIALFGFSISCIEFIKIGLDKRTMILRALDIITIVVPPALPATLT 800
                   9****99999*************************************************************************************** PP

                   HHHHHHHHHHHHT CS
  E1-E2_ATPase 169 lalalgarrlakk 181
                   + + ++++rl+kk
    CCD24889.1 801 IGTGFSLARLKKK 813
                   **********996 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.016        57       1      15 [.     829     843 ..     829     876 .. 0.84
   2 !   30.8   0.0   9.5e-11   3.4e-07      68     156 ..    1009    1122 ..     960    1138 .. 0.86
   3 !   15.8   0.0   3.7e-06     0.013     171     210 .]    1205    1244 ..    1182    1244 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.016
                 SSEEEEESBTTTBCH CS
                 xxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttg 15 
                 i+  +fDk+GT t+ 
  CCD24889.1 829 IDIMCFDKTGTMTEN 843
                 6789*********64 PP

  == domain 2  score: 30.8 bits;  conditional E-value: 9.5e-11
                  HHHHTHHHHHHHH....HCHHHHHHHHHHHHHHCHHHHHH.......................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEE CS
                  xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   68 ayaigkpewltal....dippdlgaaigsaqsqgrtvall.......................qaralavftiadplkvkpeaaeavasLkaagiev 137 
                   + +g pe +++     + p+d++++ + +   g  v+ +                         + l+ + ++++  +kp +++++  L++a+i++
  CCD24889.1 1009 SFTKGAPEIIAEIcnkaTLPSDFEDTLQYYTHNGYRVIACagkvlpkntwlysqkisreevesGLEFLGFIVFENK--LKPSTRDTLDVLQDANIRT 1103
                  566788888888888888999999999999999999999999999999999998888888877669********99..******************* PP

                  EEEESSEHHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxx RF
   Hydrolase  138 vlltgdnpetaeraanqlG 156 
                  v++tgdn  ta ++a+q G
  CCD24889.1 1104 VMCTGDNVLTAVSVARQSG 1122
                  ******************9 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 3.7e-06
                  STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  171 vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210 
                   a  sp+ k++++++Lq     v + GDg+nD  al+aA+
  CCD24889.1 1205 YARMSPDEKHELMEQLQKLDYTVGFCGDGANDCGALKAAD 1244
                  7888*************77778*****************8 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.3e-08   4.8e-05      48      90 ..     982    1024 ..     926    1025 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.3e-08
  Cation_ATPase   48 kvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCth 90  
                     +v+ ++F  + +rmsv++k +++ ++  ++KGApeii + C++
     CCD24889.1  982 IVRSFEFLAELRRMSVIVKPNSDDVYWSFTKGAPEIIAEICNK 1024
                     68999************************************86 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.8   6.4e+03     116     161 ..     929     974 ..     911     997 .. 0.59
   2 ?   -1.7   0.0      0.53   1.9e+03      47      86 ..    1036    1071 ..    1022    1076 .. 0.62
   3 !    5.8   0.0    0.0028        10      14      54 ..    1083    1123 ..    1079    1139 .. 0.88
   4 !    6.7   0.0    0.0015       5.3     197     236 ..    1218    1257 ..    1214    1264 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.8
                  HHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHH CS
  Hydrolase_3 116 kkkkeeektkkkkeeidseeeledeeiakililkdkekldelekel 161
                  +++++++ +++++e  ++ + +e+ +i+ +++  + ++ ++++ + 
   CCD24889.1 929 ENFQNKQFHSTYEERRKTPTLPENIDIIPVVVHPNGKDPKNIFIDN 974
                  3355555555666666666666666777777776666666665444 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.53
                   HHHHHCCCCSEEEEGGGTEEECTTTEEEEE--B-HHHHHH CS
  Hydrolase_3   47 pvleelgldlpvialNGaliddekgkilykstiskedvke 86  
                   +++ + g    via+ G +    k+  ly+++is+e+v++
   CCD24889.1 1036 QYYTHNG--YRVIACAGKVL--PKNTWLYSQKISREEVES 1071
                   3333333..33677777777..666777777777777776 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0028
                   S---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCC CS
  Hydrolase_3   14 kkisektkeaikklkekgikvviATGRslravlpvleelgl 54  
                   +k++++t++++  l++++i  v +TG ++ ++ +v+++ gl
   CCD24889.1 1083 NKLKPSTRDTLDVLQDANIRTVMCTGDNVLTAVSVARQSGL 1123
                   57899***********************9999999998775 PP

  == domain 4  score: 6.7 bits;  conditional E-value: 0.0015
                   HHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHH CS
  Hydrolase_3  197 kelnisleeviafGDgeNDieMLeaaglgvAmgnaseevk 236 
                   ++l+     v   GDg ND   L+aa++g+ +  a+ +v 
   CCD24889.1 1218 EQLQKLDYTVGFCGDGANDCGALKAADVGISLSEAEASVA 1257
                   5555555566678*********************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.82u 0.28s 00:00:01.10 Elapsed: 00:00:00.41
# Mc/sec: 11191.27
//
Query:       CCD24890.1  [L=488]
Description: hypothetical protein NDAI_0E00740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1789  (0.0997825); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3265.67
//
Query:       CCD24891.1  [L=350]
Description: hypothetical protein NDAI_0E00750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-24   86.4   1.5    4.6e-24   84.4   1.3    2.1  2  Thioredoxin    Thioredoxin
    2.3e-06   27.2   2.1    3.9e-06   26.4   2.1    1.4  1  OST3_OST6      OST3 / OST6 family, transporter family
    7.9e-05   23.1   0.2    0.00027   21.4   0.2    1.9  1  Thioredoxin_2  Thioredoxin-like domain
    9.3e-05   22.3   0.6    0.00015   21.6   0.1    1.6  2  TraF           F plasmid transfer operon protein
      0.004   17.4   5.0      0.089   13.1   4.7    3.1  1  Thioredoxin_8  Thioredoxin-like
  ------ inclusion threshold ------
      0.011   15.7   0.2       0.03   14.3   0.2    1.7  1  Thioredoxin_3  Thioredoxin domain
      0.039   13.9   0.1      0.085   12.8   0.1    1.6  1  AhpC-TSA       AhpC/TSA family
      0.049   13.8   0.1      0.099   12.8   0.1    1.5  1  Thioredoxin_7  Thioredoxin-like
        1.3    9.3   5.6        2.8    8.3   5.6    1.5  1  Orf78          Orf78 (ac78)


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   1.3   2.3e-27   4.6e-24       2      87 ..      31     119 ..      30     138 .. 0.84
   2 ?   -1.4   0.0       1.2   2.4e+03      36      76 ..     222     263 ..     219     283 .. 0.63

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 2.3e-27
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT..TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE.EEEE CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd..kvklakvdvdenedlakkyevegiPtlklfkngk.evkk 87 
                  +++++++nF++ + +++ + lveFyApwCg Ck+l+P+++k+a++l++  +v+ +++d + n+ l++ y+veg+Ptlk+f+  k + ++
   CCD24891.1  31 IIEINAKNFDKVIHQTNYTSLVEFYAPWCGYCKQLKPTFQKVAKKLNGvvQVVSVNCDLEMNKPLCASYGVEGYPTLKVFRPPKvNLNN 119
                  678999******************************************66666667777789******************998843333 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.2
                  HHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-.SSSSEE CS
  Thioredoxin  36 laPeleklaeelkdkvklakvdvdenedlakkyev.egiPtl 76 
                  ++P+++++a +      ++++ +++ + l +     + +P++
   CCD24891.1 222 ISPTYKSIALDWLSGYDFYQISITDVQPLKNTETFsKTYPNI 263
                  778888888777776666777666666655443331345555 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   2.1     2e-09   3.9e-06       9     105 ..      27     135 ..      19     189 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 2e-09
   OST3_OST6   9 ksngviklndenykellkgprdysvvvllTatspqfkCelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfpp... 104
                  + ++i++n +n+++++  + +y+ +v + a      C  C++++p f++vak  +        +++ ++ d++ +k + +++g++  P l +f p   
  CCD24891.1  27 TNPNIIEINAKNFDKVIH-QTNYTSLVEFYAP----WCGYCKQLKPTFQKVAKKLNGV-----VQVVSVNCDLEMNKPLCASYGVEGYPTLKVFRPpkv 115
                 5567*************5.99*********99....7*******************99.....59******************************9777 PP

   OST3_OST6 105 ...................k 105
                                    k
  CCD24891.1 116 nlnnnnnnnnnnnnnnnnnK 135
                 66666555554444433220 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   1.3e-07   0.00027       4      90 ..      46     114 ..      43     120 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.3e-07
  Thioredoxin_2   4 ngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgk 90 
                    ++   lv f++p+C+yCk+lk +++++    ++     l+     ++v++ c+ e +         + l  +ygv+g Pt+  f ++k
     CCD24891.1  46 TNYTSLVEFYAPWCGYCKQLKPTFQKV---AKK-----LNGV--VQVVSVNCDLEMN---------KPLCASYGVEGYPTLKvFRPPK 114
                    56667899**************99999...444.....5555..5555555555553.........569***********65265555 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   7.7e-08   0.00015     130     203 ..      48     114 ..      31     119 .. 0.83
   2 ?   -2.3   0.1       1.6   3.2e+03      33      50 ..     129     146 ..     112     162 .. 0.49

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7.7e-08
        TraF 130 eygLlfFyrgkcpyceaqapilqafadkyglevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpks 203
                    L+ Fy++ c+yc+++ p+ q++a+k +  v++Vsv+      +     +k   a +gv+  P+l +++p++
  CCD24891.1  48 YTSLVEFYAPWCGYCKQLKPTFQKVAKKLNGVVQVVSVNCDLE--M-----NKPLCASYGVEGYPTLKVFRPPK 114
                 457899***********************99999999988866..2.....347799***********999986 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
        TraF  33 tseesatesaaelrkele 50 
                 +++ + +++ ++ +k++ 
  CCD24891.1 129 NNNNNNKKKNSKTKKNNV 146
                 223333333333333333 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   4.7   4.5e-05     0.089       5      45 ..      51      89 ..      47     151 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.5e-05
                   EEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS CS
  Thioredoxin_8  5 lLyfgaswcppckaftpklkelyeklkkkkkveivyvsldk 45
                   l+ f+a wc  ck+  p+ +++ +kl+    v++v+v++d 
     CCD24891.1 51 LVEFYAPWCGYCKQLKPTFQKVAKKLN--GVVQVVSVNCDL 89
                   788************************..**********95 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.2   1.5e-05      0.03       8      53 ..      57     107 ..      51     110 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
                    SSSTTCHHHHHHHHHHCHCCTCECEEECC...TTHHHH..HHCT-SSSSEE CS
  Thioredoxin_3   8 pgCakCpklekavkeaaaekgikaevekv...tdfeei..ekygVmsvPal 53 
                    p C +C++l+  ++++a++++  ++v+ v    ++++   ++ygV+  P+l
     CCD24891.1  57 PWCGYCKQLKPTFQKVAKKLNGVVQVVSVncdLEMNKPlcASYGVEGYPTL 107
                    67******************8777666653234455444899999999988 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   4.2e-05     0.085      28      69 ..      50      89 ..      20     100 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.2e-05
                EEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSS CS
    AhpC-TSA 28 vvlffypkdwcpvCttelpalaklyeefkergvevigvsvds 69
                 ++ fy+  wc +C++  p ++k+++++    v+v+ v++d 
  CCD24891.1 50 SLVEFYAP-WCGYCKQLKPTFQKVAKKLN-GVVQVVSVNCDL 89
                57889999.******************99.568999999985 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     5e-05     0.099      17      83 .]      47     112 ..      41     112 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5e-05
                    T--EEEEE--TT-HHHHHHHHHHHH-HHHHH.HH..HT-EEEEESS--S-GGG.-TT-.--SSEEEEE-T CS
  Thioredoxin_7  17 gkpvlvffgaswcftCqalerdflsdeevkaala..ekfvllrvdvterdanilelde.qgvPvvafldp 83 
                    + + lv f a wc++C+ l+ +f +    k+ l+   ++v ++ d + +++   + ++ +g+P++ +++p
     CCD24891.1  47 NYTSLVEFYAPWCGYCKQLKPTFQKV--AKK-LNgvVQVVSVNCDLEMNKPLC-ASYGvEGYPTLKVFRP 112
                    55669***************999655..555.551256666666666666644.3333477888888776 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.6    0.0014       2.8      20      55 ..     114     145 ..     108     171 .. 0.45

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0014
       Orf78  20 KLAlndldnddndkaenkkekksaaeknditekesn 55 
                 K  ln+   ++n++++n+++++++++kn+ t+ ++n
  CCD24891.1 114 KVNLNN---NNNNNNNNNNNNNNNKKKNSKTK-KNN 145
                 555555...22222222222222222222222.222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1886  (0.105193); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2367.21
//
Query:       CCD24892.1  [L=334]
Description: hypothetical protein NDAI_0E00760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.9e-36  123.5  25.7    7.9e-36  123.5  25.7    2.4  2  RRP36       rRNA biogenesis protein RRP36
  ------ inclusion threshold ------
          8    5.9   7.1         14    5.1   7.1    1.5  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> RRP36  rRNA biogenesis protein RRP36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -12.4  22.1         2   1.8e+04      64     144 ..      64     146 ..      41     153 .. 0.46
   2 !  123.5  25.7   8.8e-40   7.9e-36       1     166 []     151     325 ..     151     325 .. 0.87

  Alignments for each domain:
  == domain 1  score: -12.4 bits;  conditional E-value: 2
       RRP36  64 elkkelkkekdkeeekeelkrelqrlesrekerekkererevlkelkkeekekvkegkk....pfflkksekkklllkekfeelk 144
                  +++e k e++  ++k+++k++  ++ +++++ +++++ ++ +k++k+e  ++ +e       +ff  +++  ++++++k ++ +
  CCD24892.1  64 MMEEEAK-ESK-LSKKNKMKNSKLSTIKNNDTTSTRNESEATKKKYKEESFDEDSESDSddegAFFEEEEDNDDEQQNNKINKKQ 146
                 2222222.222.4555666655555555555555555555555556555544422222223346666666666666666655543 PP

  == domain 2  score: 123.5 bits;  conditional E-value: 8.8e-40
       RRP36   1 rkskhaPtevsskkpvsrk..rev..v...kvkkkk....srDPRFdslsg.eldedlfeknYaFLdeyrekEleelkkelkkekd..k..eeekeelk 83 
                 +k khaP e sskk+ s++  re+  +   k   ++     +D+RFd+ +g + d + ++++Y+FLdeyrekE++el k+l+++k   k  + ekee++
  CCD24892.1 151 KKGKHAPIESSSKKRLSKRgvREIpgLnipK---TQnsnlYQDIRFDKSTGeSTDLSVIRRRYQFLDEYREKEISELTKRLHDRKFlnKitDYEKEEME 246
                 578*************876224444423332...33222359********9889****************************8888542679******* PP

       RRP36  84 relqrlesrekerekkererevlkelkkeekekvkegkkpfflkksekkklllkekfeelkkkkklekaierkrkKnasKekk 166
                  +l +++sr+++ ++k+ er+++ke++ e + +   + + ++lk+sek+k+++k+kf+++ k+k++ek++erkrkK+++Ke+k
  CCD24892.1 247 SKLISMKSRLQSVKNKDLERKIVKEYEDEINRN---NSTRYHLKDSEKRKVIQKWKFDHM-KAKQREKVMERKRKKRLGKEFK 325
                 ***************************999666...889*********************.9*******************98 PP

>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   7.1    0.0016        14       2      74 ..      46     119 ..      45     152 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0016
                 CHHHHHHHHHHHHHHHHHHHHHTT.TSEEEESTTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHH CS
  Inositol_P   2 leevtkaavelaakagevlreefs.enelvieekskegeedlvtaadeaveelilealaekfpshkilgeetla 74 
                  +e+ ++++++ +ka ++++ee+  e +l+ + k k+++  ++++ d  + ++  ea ++k++++++ ++ + +
  CCD24892.1  46 EDEMKTISFSSLKKADQIMMEEEAkESKLSKKNKMKNSKLSTIKNNDTTSTRNESEATKKKYKEESFDEDSESD 119
                 57899999***************9444444444449**************************888774433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3590  (0.200234); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.33s 00:00:01.11 Elapsed: 00:00:00.49
# Mc/sec: 2032.22
//
Query:       CCD24893.1  [L=157]
Description: hypothetical protein NDAI_0E00770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-11   42.6   0.0    9.8e-11   42.1   0.0    1.2  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   5.5e-15   9.8e-11       3     106 ..      42     141 ..      39     142 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 5.5e-15
   Rhodanese   3 kelkellekgkvallDvRppeeYekghIpgAvnv.skdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGG 100
                 k +++ +e++   l+DvR+pee ++   p A+n+  k+  +  + s +++ ++++  ++     + +++++c++g ra+ a+ l++++Gy+n  ++ G+
  CCD24893.1  42 KLVQQPIESKT--LVDVREPEELKEYAMPTAINIpLKTAPGALSLSSDEFFDIFHFEKPP---INNELIFFCQKGIRAQTAEELARSYGYENTGIYPGS 135
                 45677777776..*********888999******87777888888888888888888885...89999*********999999******999******* PP

   Rhodanese 101 fkawke 106
                 +k+w e
  CCD24893.1 136 IKEWLE 141
                 ****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       449  (0.0250432); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.29s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1097.08
//
Query:       CCD24894.1  [L=153]
Description: hypothetical protein NDAI_0E00780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-16   58.8   0.0    8.3e-16   58.4   0.0    1.2  1  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   4.6e-20   8.3e-16      11     105 ..      51     143 ..      39     145 .. 0.83

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 4.6e-20
   Rhodanese  11 kgkvallDvRppeeYekghIpgAvnv.skdtlsrakkseapllelpeellelgidnkktvvvycdgggraaaaaallkklGyknvsvldGGfkawk 105
                 +++v l+D+R+p e+e  +Ipg++n+  ++  + +  ++++++e++  +++    ++++++++c++g+ra+ a++ + + Gy+n  +++G++++w 
  CCD24894.1  51 DPSVTLIDCREPSEFEVVRIPGSINIpFRTHPNAFILDDQEFKETFGVDKPS---KDSELIFFCASGMRASKAQNVAVQCGYENTALYKGSMNDWV 143
                 45556*********************55555666777888888888888886...9*************8888886667**999***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       485  (0.0270511); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1166.09
//
Query:       CCD24895.1  [L=238]
Description: hypothetical protein NDAI_0E00790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-40  139.5   0.0    1.2e-40  139.3   0.0    1.0  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.3   0.0   6.8e-45   1.2e-40       1     189 [.      21     215 ..      21     222 .. 0.92

  Alignments for each domain:
  == domain 1  score: 139.3 bits;  conditional E-value: 6.8e-45
                 EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT....S---EEEE-SSHHHHHHHHHHHHCTT.....--EEE-GGGS----GGGTT-B. CS
  His_Phos_1   1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag....epidaiysSplkRarqTaeliaealg.....lpveldegLrEidfGdwegltt 90 
                 l+++RHG+t++n++++lqg++d+ ++ +G++q e+l+e+l +    +++d+++sS+lkR+++T e ++   +      +ve   gLrE+ +G+ eg+ +
  CCD24895.1  21 LFIIRHGQTDHNVKKILQGHKDTSINGTGIKQSEQLGEYLGNqdvnIKFDRVVSSDLKRCKETIETVLSYSNqddliSKVEYVYGLRERYMGVIEGM-H 118
                 689*************************************998888899999****************9999999999*******************.6 PP

                 HHHHHH..HSHHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSE.....EEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS CS
  His_Phos_1  91 aeiaeeypeeleawlrdpadvrppggEsledvaaRvaaaleelaarheget.....vlvVsHggvirallarllglpleelrrleldnaslsvlefdeg 184
                    ae+y++++++ + ++       gE +ed++ R++ ++e+++a+ ++++     v++VsHgg+ir++l+ +l+++ ++++++ + n+s++++++ ++
  CCD24895.1 119 LADAEKYADKHGKGSFRDF------GEAPEDFVGRLSTCIEKVVAESSKQNckdknVALVSHGGAIRTILR-WLEYKGQNAQQIIVFNTSVTIVDYLKD 210
                 6667778999999988888......*******************999999999999**************9.58899999****************777 PP

                 -EEEE CS
  His_Phos_1 185 gwrlv 189
                 + ++v
  CCD24895.1 211 EKQFV 215
                 76654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1914.71
//
Query:       CCD24896.1  [L=261]
Description: hypothetical protein NDAI_0E00800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-07   28.8   4.7    4.2e-06   25.9   4.7    2.0  1  Phosducin  Phosducin
  ------ inclusion threshold ------
       0.14   10.5   0.3       0.21   10.0   0.3    1.2  1  DUF3141    Protein of unknown function (DUF3141)


Domain annotation for each model (and alignments):
>> Phosducin  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   4.7   4.7e-10   4.2e-06      62     248 ..      37     236 ..       8     249 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 4.7e-10
                 .......----------------S-HHHHHHHTT----HHHHHHHHHHHHHHHHHHH-------SEEE--SHHHHH..........HHHHSS-...... CS
   Phosducin  62 rshldeeeesrddkdlkekisrkmslkeyelidkdkddeeflrkyrkqrmdemrqklskgprfkfvlelesgeqfl..........dtidkeq...... 144
                  ++l+e  e+   k+ ++++  k  l + e +  d +de+fl+ y+ +r++e++q  +   +f+ v+ ++  e             +ti+ +q      
  CCD24896.1  37 TAQLEEALEEAIVKQYENRLEDK-DLSDLEEL-EDEEDEDFLEFYKMKRLNEIKQL-QSKSKFGTVFHINKPEYNKevtlasggkdKTIEEDQdgdlks 132
                 55666666666667777777666.34455544.4789****************984.444566666655543322100001111113555444222211 PP

                 ..TT-EEEEEEE-TTSTTHHHHHHHHHHHHHH-TTSEEEEEEHHHH--TTSS-TTT-SEEEEEETTEEEEEETTGGGGS-TT--HHHHHHHHHTTT-S- CS
   Phosducin 145 ..kitlivvhiyedgvkgtealnssliclaaeyptvkfckvkasvigasdrfsrdvlpallvykagellsnfvrvtdqlaedffavdleaflqefgllp 241
                     t + vh+  +    +  l   +   + ++p +kf  + a    a + +     p+llvy  g+++ n++++ +  +++    d e ++     l 
  CCD24896.1 133 ekEGTYVFVHLSIESKLQSRILSHIFQLASKKFPDIKFVEIPANR--AIENYPDINCPTLLVYYKGDVVKNMITLLELGGNNTTLKDFEELMVRVKALD 229
                 1157999***9888766666665555555568********99865..789999999*********************999**999******99999999 PP

                 --XXXXX CS
   Phosducin 242 ekevlvl 248
                 ek+  ++
  CCD24896.1 230 EKDSRLI 236
                 9987655 PP

>> DUF3141  Protein of unknown function (DUF3141)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   2.4e-05      0.21     390     437 ..      42      89 ..      36     100 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 2.4e-05
     DUF3141 390 eeekelvegeylvrleerelddiralvederederrfavvarvseinl 437
                 e+ +e + ++y+ rle+++l+d+++l+++e ed  +f  ++r+ ei++
  CCD24896.1  42 EALEEAIVKQYENRLEDKDLSDLEELEDEEDEDFLEFYKMKRLNEIKQ 89 
                 455678999*****************999****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1185  (0.066094); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1937.19
//
Query:       CCD24897.1  [L=493]
Description: hypothetical protein NDAI_0E00810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-50  172.6  13.2    1.3e-50  172.3  13.2    1.1  1  UCH       Ubiquitin carboxyl-terminal hydrolase
      9e-10   38.7   5.5      9e-10   38.7   5.5    4.3  5  zf-UBP    Zn-finger in ubiquitin-hydrolases and other protein


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.3  13.2   1.5e-54   1.3e-50       1     257 []     137     487 ..     137     487 .. 0.90

  Alignments for each domain:
  == domain 1  score: 172.3 bits;  conditional E-value: 1.5e-54
                 -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH.....SH-CCEE--HHHHHHHHHHSGGGTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell.....kskskavsPkklkktlsklaksfsg 94 
                 +Gl+N+G tC+m+s+lQ L++ p   +y          +++ + ++ +npl+     ++al  ++ e++     +++s++    +l+++l +++++f+g
  CCD24897.1 137 FGLVNMGSTCFMSSILQTLIHNPYVVNYSMC-------QTHYNMCQSKNPLSC---TSCALDLIITEFYateskGNNSSHTGFISLLNSLLQVNENFAG 225
                 69*********************77766665.......233334466677776...899999999999999777556777777889999999******* PP

                 SSTCEHHHHHHHHHHHHHHHHCC............................HCCCHHH.HHHCCCTTSHHHHHH-EEEEE................... CS
                 xxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxx.xxxxxxxxxxxxxxxxxxxxx................... RF
         UCH  95 ykqqDaqEflaflLdqlhedlnr............................evaeekw.kkhlkrndslitdlfegqlks................... 145
                 y+qqDa+Efl+f+L+q+h+d +                             +++ +   + ++ + ++l +++f+g+lks                   
  CCD24897.1 226 YSQQDAHEFLQFILNQIHNDYKLnsmedvnsgnttaiamktlpgtqnsnnnNNNTN-HiHGNDVSCKCLSHSNFQGSLKSsilcpqcnndskttidpfm 323
                 ********************99999*********************9987433334.3589999999******************************** PP

                 ...........................................EEEEEEB-SEEEEEEESEEETEE..EEE--SEEB--SEEE-GGGBSS-BTTS-TCS CS
                 ...........................................xxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 146 ...........................................klklkrlPeiLiihlkRfsynss..ksKlntkvefpeeldlssylaeekkkkteek 199
                                                            +l+l++l + L+++lkRf+   +    K+n+ +e+p++l+++ y++++++  +ee+
  CCD24897.1 324 dlsldvkdksnlyqcldsfhkleklhdfnfhcsecnstqdpikQLTLNKLSPLLVFQLKRFEHLLNgtTVKINDFIEYPLYLNMKTYCQSSNNDTEEEE 422
                 ***************************************************************555569*******************98888776666 PP

                 -B........EEEEEEEEEESCTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCCCTTCEEEEEE CS
                 xx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 200 kk........YeLiavvvHsGslssGHYvayiknekngkWykydDetvkevkeeeevlssayiLfY 257
                  +        YeL+++++H+G++++GHY++++k  ++g+W+k++D+ v++++eee+++++ay+LfY
  CCD24897.1 423 SNsenvpdmiYELTSIISHKGTVNEGHYIVVVK-VNDGQWFKFNDSMVSAITEEEALKQQAYLLFY 487
                 6599**************************999.7799***************988888******* PP

>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   5.5     1e-13     9e-10       1      61 [.      46     105 ..      46     108 .. 0.95
   2 ?   -4.7   2.1         2   1.8e+04       4      17 ..     174     185 ..     166     187 .. 0.69
   3 ?    0.0   0.8      0.12   1.1e+03       1      19 [.     308     343 ..     308     361 .. 0.63
   4 ?   -2.0   0.1      0.54   4.8e+03       1       7 [.     355     361 ..     355     365 .. 0.80
   5 ?   -0.2   0.0      0.15   1.3e+03      36      55 ..     447     466 ..     433     471 .. 0.77

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1e-13
                 -TTTH--..SSEEEETTT--EEE-TTTT-HHHHHHHHH---EEEETTT--EEETTTTEEBE- CS
      zf-UBP   1 CseCnse.nknlWlCLkCghvgCgrksnghalkHyeetrHplavdlstlsvycyscddeved 61 
                 Cs+C++   ++ ++CL+C + gC++  n+   +H ++ +H + ++ s++ ++c++c d++ d
  CCD24897.1  46 CSTCKEInAGSTFMCLQCDFSGCWN--NSDFANHSKQMGHIFSINSSNGLLFCFKCVDYIGD 105
                 *****88889**************8..99******************************977 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 2
                 TH--.SSEEEETTT CS
      zf-UBP   4 CnsenknlWlCLkC 17 
                 C+  +kn+  C +C
  CCD24897.1 174 CQ--SKNPLSCTSC 185
                 55..3688888888 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.12
                 -TTTH.................--.SSEEEETTT-- CS
      zf-UBP   1 CseCn.................senknlWlCLkCgh 19 
                 C +Cn                 ++++nl+ CL+  h
  CCD24897.1 308 CPQCNndskttidpfmdlsldvKDKSNLYQCLDSFH 343
                 777775555555555555555322466888876544 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.54
                 -TTTH-- CS
      zf-UBP   1 CseCnse 7  
                 CseCns+
  CCD24897.1 355 CSECNST 361
                 99**976 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.15
                 HH---EEEETTT--EEETTT CS
      zf-UBP  36 etrHplavdlstlsvycysc 55 
                 e ++ ++v++++++ + +++
  CCD24897.1 447 EGHYIVVVKVNDGQWFKFND 466
                 4569999******9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1169  (0.0652016); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3504.39
//
Query:       CCD24898.1  [L=288]
Description: hypothetical protein NDAI_0E00820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-66  223.4   0.0    3.5e-66  222.9   0.0    1.2  1  FSH1           Serine hydrolase (FSH1)
     0.0097   15.7   0.0      0.025   14.4   0.0    1.7  1  Abhydrolase_2  Phospholipase/Carboxylesterase
  ------ inclusion threshold ------
      0.061   12.9   0.0       0.12   11.9   0.0    1.5  1  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
      0.086   12.6   0.0       0.19   11.4   0.0    1.6  1  DUF1281_C      Ferredoxin-like domain in Api92-like protein


Domain annotation for each model (and alignments):
>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.9   0.0   7.8e-70   3.5e-66       1     212 []       1     241 [.       1     241 [. 0.95

  Alignments for each domain:
  == domain 1  score: 222.9 bits;  conditional E-value: 7.8e-70
        FSH1   1 mskkkkiLcLhGytqsgeiFraktsalrkllkklnvelvyldaplelaekadlpkseseeee.......................kseeeeesraWfrk 76 
                 m++k kiL+LhG++qs++iF+akt++lrk+lkkl++e++ +++++ + +k+dl + +se+e                         + ++e+ ++W+ k
  CCD24898.1   1 MTTKGKILMLHGFVQSDKIFSAKTGGLRKALKKLGYEMFIPCGTHLI-NKSDLLSRSSERELnyddkkqqdddeqsiniakefntVNDDDEKLYGWWIK 98 
                 899********************************************.99999887666666899******************98899999******** PP

        FSH1  77 kde....kneyegleesldavkdyikengpfdGiiGFSqGaalaallaslleellkea..shpslkfailvsGfkleepkyeeyyeedkiqtptLhvlG 169
                 k+       +y+  + +ld+++dy+ engpfdGi+GFSqGa la++la++++  lk +  ++p+lkf+i +sGf+l++++y+e y++++i +p+Lhv G
  CCD24898.1  99 KNSgpkaLLDYTIEQYTLDFLHDYVVENGPFDGILGFSQGAGLAGYLATDFNGILKLSkeEQPPLKFLISFSGFRLDPEMYQESYDKNSIMMPSLHVQG 197
                 **98776667778889************************************999988889************************************** PP

        FSH1 170 elDtvvdeerseaLaeafkns.skvlkHpggHfvPnkkeyvdav 212
                 elD+vv+eer ++L++++ ++ + +lkHpggHf+Pn+k+++++v
  CCD24898.1 198 ELDSVVSEERVMRLYNSCPEDsRALLKHPGGHFIPNSKPFLNQV 241
                 ********************99******************9985 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.6e-06     0.025     109     171 ..     132     204 ..     131     233 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.6e-06
                    EEEETHHHHHHHHHH......HT-SS....--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS- CS
  Abhydrolase_2 109 igGFSqGaalalyla......ltlpk....klggivafsgalplsqklessatavtkklpilqiHgeeDpvvp 171
                    i GFSqGa la yla      l+l+k    +l+  ++fsg+ + ++  ++s  ++   +p l++ ge D vv 
     CCD24898.1 132 ILGFSQGAGLAGYLAtdfngiLKLSKeeqpPLKFLISFSGFRLDPEMYQESYDKNSIMMPSLHVQGELDSVVS 204
                    78********987752222223333355569********************999999*************995 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.7e-05      0.12     219     268 ..     182     230 ..     172     231 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.7e-05
                    -HHHHHCT--S-EEEEEECCSSTTC.CHHHHHHHHHCCTT-EEEEECECTT CS
  Peptidase_S15 219 nlsedadkvkapvllvgGwnDwnvk.ngaiklyealkapgvklilgpwtHv 268
                    ++++  + + +p l+v+G  D  v  + +++ly+  ++    l+ +p+ H+
     CCD24898.1 182 SYDK--NSIMMPSLHVQGELDSVVSeERVMRLYNSCPEDSRALLKHPGGHF 230
                    3343..88999**********9999**************99*********6 PP

>> DUF1281_C  Ferredoxin-like domain in Api92-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.3e-05      0.19       5      70 ..      83     147 ..      79     161 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.3e-05
   DUF1281_C   5 ywkreddseltlsFdtaWspPeeiiaaLskkydvefeheyaeegiglncGyreyknGelieeylpe 70 
                 ++ ++dd++l  +  ++ s P+++++   ++y ++f h+y  e++ +  G   +++G     yl +
  CCD24898.1  83 NTVNDDDEKLYGWWIKKNSGPKALLDYTIEQYTLDFLHDYVVENGPF-DGILGFSQGAGLAGYLAT 147
                 45566779999**********************************99.******999999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2194.79
//
Query:       CCD24899.1  [L=385]
Description: hypothetical protein NDAI_0E00830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2217  (0.123654); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.31s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 2462.38
//
Query:       CCD24900.1  [L=265]
Description: hypothetical protein NDAI_0E00840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-46  156.7   0.0    6.6e-46  156.5   0.0    1.0  1  HEM4      Uroporphyrinogen-III synthase HemD
  ------ inclusion threshold ------
      0.033   13.3   0.0      0.058   12.6   0.0    1.4  1  PIF1      PIF1-like helicase


Domain annotation for each model (and alignments):
>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.5   0.0   7.4e-50   6.6e-46       2     231 ..      19     254 ..      18     255 .. 0.90

  Alignments for each domain:
  == domain 1  score: 156.5 bits;  conditional E-value: 7.4e-50
                 HHHHHHHHTTEEEEE---EECCECCHHHHHHHHHT......--SEEEE--HHHHHHHHHHHH..HTT---HHHHHCSEEESSHHHHHHHHHTT---SEE CS
        HEM4   2 elaealearGaeplelPlieiepaedraelraalddle.agkydwliftSanavealfealk..reeedvkalaslkvaavGpaTaraLeelglrvdlv 97 
                 ++  +++++G++p ++Pli++++   ++el +++ d    ++  ++++tS+++ve++ e+          + l ++ v++vGp+Ta +Le+ g+++   
  CCD24900.1  19 RYDVLFKEKGYNPKFIPLIKHTH--LPQELLHLIADESyLKNLRYIVVTSQRTVECINEQILpqLTDKQKQLLFDKVVYTVGPTTASYLERSGFKNIKG 115
                 677789*****************..8889999996666689******************999755555555666999********************** PP

                 -..SSSHHHHGGGS-.---E.EE.....EEE-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HHHHHHHHHHHHTT--SEEEESSHHHHHHHHHH-S- CS
        HEM4  98 pseegtaegLaeelaeslag.kr.....vlllrgeiarddlaegLeergaevdevevYetvpaeeepeelkealkagevdavvftSpstvrnllellkd 190
                 + e+g+++ L +++ ++l++  +     +lll+g+i+rd+++++L+ +g++++ev+vYet   +++ e++++ l  ++  +vv++Sp++++ +le++k+
  CCD24900.1 116 GHEAGNGDILSDIIVSDLSSnNKdnmheILLLVGKIRRDIIPKKLNDNGFSIKEVIVYETDTLKDNCENFQATL--EDNCWVVVFSPQGIDDILEYIKQ 212
                 ****************777755578999********************************66666666666666..7889******************* PP

                 HH.HHHCTSEEEEESHHHHHHHHHTT---SEEETS--HHHHH CS
        HEM4 191 eg.delkevkvaaiGptTaealkklglkvdvvaeeptaeglv 231
                 ++   ++++++aaiGptT+++l+++g+   +v+++p+a +l+
  CCD24900.1 213 NNiLTNHKIQIAAIGPTTEKFLNQNGIYEMIVSPKPDAHSLL 254
                 99*999********************************9997 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   6.5e-06     0.058     251     299 ..      42      91 ..      20     112 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.5e-06
                 --S.S--............EEEESSCCHHHHHHHHHHCCSSS--EEEE-EE CS
        PIF1 251 ygd.llqeltdkeylee.railcptnedvdeiNnyvlsklpgeekeylssD 299
                 +++ ll+ + d++yl++ r i+++++++v+ iN+++l +l+ ++k+ l  D
  CCD24900.1  42 LPQeLLHLIADESYLKNlRYIVVTSQRTVECINEQILPQLTDKQKQLL-FD 91 
                 4555889999*****97699********************99988754.45 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2005.39
//
Query:       CCD24901.1  [L=399]
Description: hypothetical protein NDAI_0E00850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.8e-127  424.3   0.0   4.3e-127  424.1   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.1   0.0  2.4e-131  4.3e-127       1     342 []      16     368 ..      16     368 .. 0.97

  Alignments for each domain:
  == domain 1  score: 424.1 bits;  conditional E-value: 2.4e-131
                   CCCS-EEETTEEESSSEEE----S-TTTTTCS.HH.HHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EE CS
  Oxidored_FMN   1 kLFkPikignmtLknRivmapmtrlraldkgnvle.dlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskv 96 
                   +LFkP+k+gn+t+++R+vmap+tr+ra+ +g +++ d+a+eyy qr+++++++iite++f++++s g+dnapgiw+ eqie+w+k+++++hengs+v
    CCD24901.1  16 DLFKPLKVGNTTVEHRVVMAPLTRMRAHAPGHIPNrDWAVEYYDQRSKRKGSMIITEGVFPSAQSSGYDNAPGIWTPEQIEQWTKIFKKIHENGSFV 112
                   69*********************************************************************************************** PP

                   EEEEE--GGGS..SCSTCEC....SS.ESSSSSTTT-.....S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT CS
  Oxidored_FMN  97 vvqlwhlGreakseyladqe..vdspsdpvaldaqee....esaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspks 187
                   + qlw+lGr+a+ +  a+++  +ds+sd+ ++d++++    +s++++  + +tk+eikq+++++v+ Ak+a+eAg+DgVeih+an+YLlnqFl+p s
    CCD24901.1 113 WPQLWVLGRQAFPDAMARDGlrYDSASDDLYMDDEMKekaiKSNNPQ--HGITKDEIKQYVKDYVQGAKNAVEAGADGVEIHSANSYLLNQFLDPIS 207
                   *******************999************9999999999999..************************************************ PP

                   ----STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHH...HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCC.. CS
  Oxidored_FMN 188 nkrtDeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaet...aqkivllkelekrlkdgkklalvhaaeprkrgagsvrte.. 279
                   n+rtDeygGs+enRarF+levvda  eavg ervg+RlSp + ++ ++++a+     q++++++elekr+k+gk++a++h++epr+++ +s  t   
    CCD24901.1 208 NHRTDEYGGSIENRARFTLEVVDALIEAVGPERVGIRLSPWGRYGGMSGSADPtllSQFCYVVGELEKRAKAGKRIAFIHLVEPRVTDLFSDSTAvp 304
                   ****************************************************99*9********************************998877765 PP

                   TT.HHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCGG CS
  Oxidored_FMN 280 qe.kntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpln 342
                   ++ ++++f++++wk+ +i++g++   ++  +++  +++++++ gR+f++ pdlv++l+kg pln
    CCD24901.1 305 EDdGTNDFIYSIWKGVVIRAGMFPARPESIKAAVANDQTMIGAGRYFISTPDLVDRLEKGQPLN 368
                   556999*****************999988888888*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       583  (0.0325172); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2935.73
//
Query:       CCD24902.1  [L=524]
Description: hypothetical protein NDAI_0E00860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-45  150.6   0.0    1.8e-44  149.7   0.0    1.5  1  GMP_synt_C       GMP synthase C terminal domain
    1.5e-40  139.0   0.0    2.7e-40  138.2   0.0    1.4  1  GATase           Glutamine amidotransferase class-I
    4.8e-08   32.4   0.0    9.7e-06   24.9   0.0    2.2  2  NAD_synthase     NAD synthase
    2.7e-05   24.1   0.1    0.00023   21.0   0.0    2.4  2  Peptidase_C26    Peptidase C26
  ------ inclusion threshold ------
      0.014   14.9   0.0       0.36   10.3   0.0    2.2  2  QueC             Queuosine biosynthesis protein QueC
      0.014   15.4   0.0      0.025   14.6   0.0    1.4  1  PAPS_reduct      Phosphoadenosine phosphosulfate reductase fa
      0.038   12.8   0.1      0.079   11.7   0.0    1.5  2  tRNA_Me_trans    tRNA methyl transferase
      0.051   13.6   0.0       0.13   12.3   0.0    1.7  1  MetJ             Met Apo-repressor, MetJ
      0.069   12.4   0.1       0.11   11.7   0.1    1.3  1  Arginosuc_synth  Arginosuccinate synthase
      0.075   12.6   0.0       0.21   11.2   0.0    1.7  2  ThiI             Thiamine biosynthesis protein (ThiI)


Domain annotation for each model (and alignments):
>> GMP_synt_C  GMP synthase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.0   9.9e-48   1.8e-44       1      92 []     432     523 ..     432     523 .. 0.99

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 9.9e-48
                 CCCCTTT-GGGSSEEEEEEEEEEE----------EEEEEEEEE---------B----HHHHHHHHHHHHHHSTT---EEEE---TTTS-S-- CS
  GMP_synt_C   1 eelkkaglykkiwQafavllpvksvGvmgdkRtyeyvvalRaveseDamtadvaelpyevLekissrivnevkgvnrvvyditskPpatiEw 92 
                 ee++k+gly+ki Qafa+llpvksvGvmgd+Rtye+v+alRave++D+mtad++ +++++L+k++srivnev+gv+rv+yditskPpat+Ew
  CCD24902.1 432 EEIRKHGLYDKIAQAFACLLPVKSVGVMGDQRTYEQVIALRAVETSDFMTADWYPFEHSFLKKVASRIVNEVDGVARVTYDITSKPPATVEW 523
                 79****************************************************************************************** PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   0.0   1.5e-43   2.7e-40       2     189 ..      15     194 ..      14     195 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.2 bits;  conditional E-value: 1.5e-43
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTTTTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTTEEEEEECEEE CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspgvegkieaikearenkiPiLGICLGmQllaiefgrkvvkekekeh 100
                 ++D+++++++ ++++l+e++++ e++p++++++e      +p+gi++sgGp s++  +++ + + +++ ++PiLGIC+GmQ la   g++v + +++e+
  CCD24902.1  15 VLDFGSQYSHLITRRLREFNIYAEMLPCTQKISEL---SWKPKGIILSGGPYSVYDPEAPHVDHDIFKLDVPILGICYGMQELAWINGKQVGRGEKREY 110
                 89***************************999999...589********************************************************** PP

                 EEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEESSBTTSTTSTTHHHHHHHHHHH CS
      GATase 101 hggtmrlgddetallyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQFHPEststpegpellfnflik 189
                   +t ++ d++  l+ +  +  +++++H++++     +p+g++ +a+s+++  +++i++++++++g+QFHPE+t++ +g++ll+nf ++
  CCD24902.1 111 GPATLNVLDKSDPLFANI-DHSTVWMSHGDKLHG---LPTGFKTIATSDNS-PYCGIVHETKKIYGIQFHPEVTHSSQGKQLLKNFAVD 194
                 *********999*****9.999************...***********777.9*********************************876 PP

>> NAD_synthase  NAD synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   5.4e-09   9.7e-06      19      84 ..     223     288 ..     202     324 .. 0.82
   2 !    5.3   0.0    0.0051       9.2     148     177 ..     372     401 ..     369     404 .. 0.93

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 5.4e-09
                   SEEEEEE-SSHHHHHHHHHHHHHHTCGEEEEEE--.SSSTTHHHHHHHHHHHHHHTSEEEE---HHH CS
  NAD_synthase  19 kgvvlGlSGGvDSslvaalavkalgkenvlalllP.ssvsseedvedalalaenlgievktidikpi 84 
                    +v+  +SGGvDS+++++l  +a+  e+++a+l+  ++   +e ++  ++l+e lgi+ +++d ++ 
    CCD24902.1 223 AEVIGAVSGGVDSTVASKLMTEAI-GERFHAILVDnGVLRLNEAATVKKTLVEGLGINLTVVDAADE 288
                   4566679*****************.689******977888899999999***********9997764 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0051
                   BETTTTS-HHHHHHHHHHTT--HHHHCS-- CS
  NAD_synthase 148 lapiaellKtevkeLakelnvPervlkkpP 177
                   ++p+ el+K ev++L + l++ ++++ ++P
    CCD24902.1 372 IEPLRELFKDEVRHLGELLGISHELVWRHP 401
                   78*********************9999888 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.3e-07   0.00023     102     216 .]      78     177 ..      72     177 .. 0.75
   2 ?   -3.6   0.0       4.4   7.9e+03     116     143 ..     327     351 ..     327     361 .. 0.59

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 1.3e-07
  Peptidase_C26 102 lergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheqsaashavkvekgsllaellgseeievnslHhqaikelaeelrveAvaeDgviE 197
                     + +vPilgiC G+q+l+   G + + + e         + e   a+ +v  +++ l+a++       v   H   ++ l ++++ +A+++     
     CCD24902.1  78 FKLDVPILGICYGMQELAWING-KQVGRGE---------KREYGPATLNVLDKSDPLFANIDH---STVWMSHGDKLHGLPTGFKTIATSDNSPYC 160
                    5779*************44443.2222222.........122233456677777888888765...889999******************988888 PP

  Peptidase_C26 198 aieseeakafvlgvQwHPE 216
                     i +e++k  ++g+Q+HPE
     CCD24902.1 161 GIVHETKK--IYGIQFHPE 177
                    88888866..********9 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.4
  Peptidase_C26 116 qllnvalGGtlyqdieeqsgltdhrehe 143
                    q++   l Gtly d+ e      ++ ++
     CCD24902.1 327 QEIQYLLQGTLYPDVIES---ISFKGPS 351
                    566677889999999863...3333333 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0002      0.36       3      61 ..     226     285 ..     224     310 .. 0.78
   2 ?    2.2   0.0     0.058     1e+02     142     179 ..     356     396 ..     334     399 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0002
                 EEE--SSHHHHHHHHHHHHH.-SEEEEEEEESS-T.TSHHHHHHHHHHHHT--.-EEEEE- CS
        QueC   3 vvllSGGlDSttvlalakke.gkevealtfdYgqr.hkkeleaakkiakelgveehkildl 61 
                 +  +SGG+DSt++  l++++ g++ +a+ +d g    ++   + k++++ lg+ + +++d 
  CCD24902.1 226 IGAVSGGVDSTVASKLMTEAiGERFHAILVDNGVLrLNEAATVKKTLVEGLGI-NLTVVDA 285
                 5579********998777662699********986266666777889999999.8888886 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.058
                 HHHHHH...HTS--EEE-TTTT--HHHHHHHHHHTTHHHHH CS
        QueC 142 kalnlg...edkkieieaPlidlsKaeivklgkelgvplee 179
                 +  n+g   e+ k+++  Pl +l K e+ +lg+ lg+  e+
  CCD24902.1 356 THHNVGgllENMKLKLIEPLRELFKDEVRHLGELLGISHEL 396
                 33444456588899********************9988776 PP

>> PAPS_reduct  Phosphoadenosine phosphosulfate reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   1.4e-05     0.025       3      76 ..     226     301 ..     224     322 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
                  EEE--SSCTCHHHHHHHHHHCTT.HEEEEEE-STB.-HHHHHHHHHHHHHTT-EEEEEE-SCHHHHHHHHHH-S-T CS
  PAPS_reduct   3 vvsvsgGkdslVllhLalkafkp.vpvvfvdtghe.fpetiefvdeleeryglrlkvyepeeevaekinaekhgss 76 
                  + +vsgG ds+V  +L+++a  + ++ + vd g    +e  +  + l+e +g++l v++  +e+  k++  + +++
   CCD24902.1 226 IGAVSGGVDSTVASKLMTEAIGErFHAILVDNGVLrLNEAATVKKTLVEGLGINLTVVDAADEFLGKLKGVTDPEK 301
                  5689*******************558******9752688888889999************9999888887777766 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.4e-05     0.079       2      30 ..     224     252 ..     223     295 .. 0.60
   2 ?   -3.9   0.0       2.5   4.5e+03     164     181 ..     371     388 ..     368     393 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.4e-05
  tRNA_Me_trans   2 kvvvalSgGVDSsvaaallkeqgyevigv 30 
                    +v+ a+SgGVDS+va  l++e+  e    
     CCD24902.1 224 EVIGAVSGGVDSTVASKLMTEAIGERFHA 252
                    6899***************9986544333 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.5
  tRNA_Me_trans 164 llfPlgeltKeevrkiAk 181
                    l+ Pl el K+evr++ +
     CCD24902.1 371 LIEPLRELFKDEVRHLGE 388
                    6679**********9866 PP

>> MetJ  Met Apo-repressor, MetJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     7e-05      0.13       5      57 ..     429     481 ..     413     496 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7e-05
        MetJ   5 eyispyaehgkkseqvkkvtvsiplkvlkvltdertrrqvnnlrhatnsellc 57 
                  yi+   +hg   +  +  +  +p+k + v+ d+rt  qv  lr    s+++ 
  CCD24902.1 429 IYIEEIRKHGLYDKIAQAFACLLPVKSVGVMGDQRTYEQVIALRAVETSDFMT 481
                 5888999999999999999999**********************999998875 PP

>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   6.3e-05      0.11       3      64 ..     228     290 ..     226     294 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.3e-05
  Arginosuc_synth   3 aysGGlDtsviikllkeklgeeviavavdvGqee.edldevkekalklgavksvvvDakeefv 64 
                      a sGG+D +v+ kl++e +ge   a++vd G  + ++  +vk+   +   ++ +vvDa +ef 
       CCD24902.1 228 AVSGGVDSTVASKLMTEAIGERFHAILVDNGVLRlNEAATVKKTLVEGLGINLTVVDAADEFL 290
                      78*****************************8762444445444444446799********96 PP

>> ThiI  Thiamine biosynthesis protein (ThiI)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00012      0.21       5      56 ..     224     276 ..     220     323 .. 0.85
   2 ?   -2.6   0.0         2   3.5e+03     123     156 ..     351     387 ..     349     393 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00012
        ThiI   5 kvlaLlSgGiDSpVaaylllkR.Gcrvvlvhlknepgtseeaiekveklaell 56 
                 +v+  +SgG+DS Va+ l+ +  G r +++ ++n     +ea  + ++l+e l
  CCD24902.1 224 EVIGAVSGGVDSTVASKLMTEAiGERFHAILVDNGVLRLNEAATVKKTLVEGL 276
                 688889**********999874499*******999999888888888887765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2
        ThiI 123 Sqtle...NlrvisavvnllilrPLigldKeeiiklA 156
                 Sqt++   N+  + ++++l +++PL  l K+e+ +l 
  CCD24902.1 351 SQTIKthhNVGGLLENMKLKLIEPLRELFKDEVRHLG 387
                 6666433377778899999999**9999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3826.68
//
Query:       CCD24903.1  [L=376]
Description: hypothetical protein NDAI_0E00870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-26   90.7   6.6    4.7e-26   90.7   6.6    1.6  2  DnaJ             DnaJ domain
    3.7e-20   72.5   0.0    4.9e-20   72.1   0.0    1.2  1  DnaJ_C           DnaJ C terminal domain
    1.7e-15   57.1  20.8    3.2e-15   56.2  20.8    1.5  1  DnaJ_CXXCXGXG    DnaJ central domain
    2.1e-06   27.6  10.0     0.0001   22.2   1.3    2.3  2  Anti-TRAP        Tryptophan RNA-binding attenuator protein in
  ------ inclusion threshold ------
      0.013   15.5   9.0        0.2   11.7   0.5    2.2  2  HypA             Hydrogenase/urease nickel incorporation, met
       0.23   11.5   9.6        2.3    8.3   9.6    2.3  1  Cytochrome_C7    Cytochrome c7 and related cytochrome c
       0.82   10.2   6.7        1.7    9.2   6.7    1.5  1  zf-CHY           CHY zinc finger
        2.9    7.5   7.8          5    6.8   0.9    2.2  2  TackOD1          Thaumarchaeal output domain 1
        6.3    6.8   8.3         16    5.6   8.3    1.6  1  zinc-ribbons_6   zinc-ribbons
        9.3    6.4  10.7         69    3.6  11.0    2.0  1  DZR              Double zinc ribbon


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   6.6   2.6e-29   4.7e-26       1      63 []      22      84 ..      22      84 .. 0.99
   2 ?   -4.4   0.1        10   1.8e+04      29      33 ..     260     264 ..     257     268 .. 0.69

  Alignments for each domain:
  == domain 1  score: 90.7 bits;  conditional E-value: 2.6e-29
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                dyY+iL+++kda++++I++aYr+l++kyHPDknp+d++a++kF e+ +Aye+LsdpekR++YD
  CCD24903.1 22 DYYKILELDKDATDKDIRSAYRQLSKKYHPDKNPNDEDAHHKFIEVGQAYEILSDPEKRQRYD 84
                8*************************************************************9 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 10
                 STTTS CS
        DnaJ  29 HPDkn 33 
                 HPD  
  CCD24903.1 260 HPDYD 264
                 89865 PP

>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   2.7e-23   4.9e-20       7     148 .]     145     362 ..     139     362 .. 0.89

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 2.7e-23
                 E-HHHHHH-.EEE.EEEE........................................................................TEEEEEE-T CS
                 xxxxxxxxxxxxxxxxxxxxx.................................................................xxxxxxxxxxxxx RF
      DnaJ_C   7 isleelykGktkkikikrnvi.................................................................kkekktlevkipa 40 
                  sl+  y+G   k++i+ n+i                                                                 +++ k +e++ pa
  CCD24903.1 145 TSLKNYYNGYVLKFSINLNDIcdhchgsgsndgkstkcpdcqgrgvtvqvirmgmmtqqiqqvcgkcggkgqiiknpcktchgskvVQKPKDFEIELPA 243
                 699****************99***************************************************************98777789******* PP

                 T--TT-EEEETT-SSSS...S---EEEEEE..E---SS-EEETTEEEEEEEEEHHHHHHT...EEEEEE-SS-EEEE.......EE--TT-EEEETT-S CS
                 xxxxxxxxxxxxxxxxxx.xxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
      DnaJ_C  41 GikdgqkirlegeGdeeg.gepGDlivtik..vkphpvFkrkgndlyveveislaeallG...gklevptldgkvkl.......kitqpgevlrikgkG 126
                 G + +     +g +d+++ + +GD++++++   k++  ++r+g +ly +  ++ +eal G   +  ++  ld ++ +       ki+q+ge+ ri g G
  CCD24903.1 244 GAPRKFVHAEHGAADKHPdYDSGDVYIEFTenDKDNMGYRRRGPHLYRTEVLNATEALYGgweR--QLAFLDSSKIVtikrepnKIIQNGETERIAGFG 340
                 ****999999999999999**********977667789*********77689********7652..44344333333234455599************* PP

                 -EET...TEE--EEEEEEEE-- CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C 127 mpklkkpgkrGdlyvevkvefP 148
                 mp  + ++++Gdl++ + v++P
  CCD24903.1 341 MPLGNGRKGFGDLFIDYVVVMP 362
                 ********************99 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2  20.8   1.8e-18   3.2e-15       1      67 []     166     229 ..     166     229 .. 0.91

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 1.8e-18
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgkkktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C++C+Gsg+++gk+++C++C+G+Gv+++   ++g+++qq+q+ C +C+G+G++i  k++Ck+C+G++
     CCD24903.1 166 CDHCHGSGSNDGKSTKCPDCQGRGVTVQVI-RMGMMTQQIQQVCGKCGGKGQII--KNPCKTCHGSK 229
                    *********99*************654444.3999*******************..889******85 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   1.3   5.8e-08    0.0001       9      42 ..     162     191 ..     159     193 .. 0.91
   2 !    9.7   1.9   0.00046      0.82       4      42 ..     199     231 ..     197     235 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.8e-08
                 CEEE-TTTTTTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP   9 LEtkCdaCngsGkiepeeprasleCPkCsGkgli 42 
                 L   Cd+C+gsG  +++    s +CP+C+G+g+ 
  CCD24903.1 162 LNDICDHCHGSGSNDGK----STKCPDCQGRGVT 191
                 7889**********999....99********985 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00046
                 S-HHHCEEE-TTTTTTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP   4 ialpeLEtkCdaCngsGkiepeeprasleCPkCsGkgli 42 
                 + + ++ + C +C g G+i  +      +C  C G +++
  CCD24903.1 199 MMTQQIQQVCGKCGGKGQIIKN------PCKTCHGSKVV 231
                 668889999*************......********997 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   0.00011       0.2      68      99 ..     161     192 ..     140     200 .. 0.82
   2 ?    8.3   2.1    0.0013       2.3      64     107 ..     199     239 ..     192     241 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                 --EEEETTTS-EEECHHHHHS-TTTSSS-EEE CS
        HypA  68 pvkvrCreCgkefeleekalrCpkCgsadvei 99 
                 +++  C++C+ +++ + k+++Cp+C++++v++
  CCD24903.1 161 NLNDICDHCHGSGSNDGKSTKCPDCQGRGVTV 192
                 55668*****99998887899******99987 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0013
                 EEEE--EEEETTTS-EEECHHHHHS-TTTSSS-EEEEESSSEEE CS
        HypA  64 ieevpvkvrCreCgkefeleekalrCpkCgsadveivsGeellv 107
                 + +++++  C +Cg ++++ ++   C++C++++v +++ +++++
  CCD24903.1 199 MMTQQIQQVCGKCGGKGQIIKN--PCKTCHGSKV-VQKPKDFEI 239
                 66788999**********7755..7*****9886.556666665 PP

>> Cytochrome_C7  Cytochrome c7 and related cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   9.6    0.0013       2.3      13      72 ..     163     226 ..     124     239 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0013
  Cytochrome_C7  13 gykCtdCHsklfeska.k.......kkmaemekgkskkaeveslt......CgaCHdgknafsvakkaeCakCH 72 
                    +  C++CH++  + ++ +       +        +++ +++  +t      Cg+C  + +      k+ C++CH
     CCD24903.1 163 NDICDHCHGSGSNDGKsTkcpdcqgR------GVTVQVIRMGMMTqqiqqvCGKCGGKGQII----KNPCKTCH 226
                    567*****999433332334444331......222222233222223445699998888777....78999999 PP

>> zf-CHY  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.7   0.00094       1.7      22      73 ..     166     226 ..     161     229 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00094
      zf-CHY  22 CreCH.......eeledhelerlevkevlcllCeteqekavlCkkCkk..efaeyfCpiCk 73 
                 C++CH       ++++  +++   v+  ++ +  ++q+++++C+kC+   ++ +  C++C+
  CCD24903.1 166 CDHCHgsgsndgKSTKCPDCQGRGVTVQVIRMGMMTQQIQQVCGKCGGkgQIIKNPCKTCH 226
                 *****999887633444455555555556778888999********7745677778****8 PP

>> TackOD1  Thaumarchaeal output domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.8     0.011        19     147     169 ..     164     186 ..     144     204 .. 0.60
   2 ?    6.8   0.9    0.0028         5      73      99 ..     205     231 ..     190     235 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.011
     TackOD1 147 ykCnsCkslfsepevkarClsCe 169
                  +C++C+ + s+   + +C +C+
  CCD24903.1 164 DICDHCHGSGSNDGKSTKCPDCQ 186
                 33444444444444444444443 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0028
     TackOD1  73 irlCpsCksghlnvrevCpkCkSidie 99 
                 +++C +C ++   +++ C+ C+ +++ 
  CCD24903.1 205 QQVCGKCGGKGQIIKNPCKTCHGSKVV 231
                 579*******************98875 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   8.3     0.009        16       2      53 ..     165     223 ..     164     233 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.009
                     --SSS-S--EE-SSEEE-TTT--.............EEEEEEE-SSS-S---EEEETTEEEE--T CS
  zinc-ribbons_6   2 kCpeCqqelekrgeqyhCeaCqe.............dlkkealCpeCeqelevlkaCgavdyfCn 53 
                     +C +C+   +++g++++C  Cq                + +++C +C+ + +++k        C+
      CCD24903.1 165 ICDHCHGSGSNDGKSTKCPDCQGrgvtvqvirmgmmTQQIQQVCGKCGGKGQIIKNP------CK 223
                     69********************98985555555554445555555555555554432......44 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  11.0     0.038        69       1      48 [.     166     225 ..     161     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.038
         DZR   1 CpqCgee..lppdarfCseCgtk...lkavaa..........edrCpsCgekvdpearfCpeC 48 
                 C +C+    ++ ++  C++C+ +   +   +           +++C +Cg k +  ++ C+ C
  CCD24903.1 166 CDHCHGSgsNDGKSTKCPDCQGRgvtV---QVirmgmmtqqiQQVCGKCGGKGQIIKNPCKTC 225
                 9999988667778889****9996442...3345688999999*********99999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2757.89
//
Query:       CCD24904.1  [L=172]
Description: hypothetical protein NDAI_0E00880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-55  187.7   1.1    1.8e-55  187.5   1.1    1.1  1  CAF20     Cap associated factor


Domain annotation for each model (and alignments):
>> CAF20  Cap associated factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   1.1     1e-59   1.8e-55       1     159 []       3     166 ..       3     166 .. 0.88

  Alignments for each domain:
  == domain 1  score: 187.5 bits;  conditional E-value: 1e-59
       CAF20   1 kYteeeLlelkeeealvpqpqileaFnaliekvkelqaekeeakkwknGehgnersyhhlnrRRsSrsaakkPklkkkka.vkvDedGwstlekkkkas 98 
                 kYt++eLl+lk++e+l   ++++++F+a+iekvk+lq++kee       e++++  ++h+nrRRsS+++a +Pk+k+ k  v++D++Gwstl++kk+  
  CCD24904.1   3 KYTIDELLQLKPSETL-VANFDAVDFRAIIEKVKQLQSLKEE-------EFAHHGGHGHFNRRRSSHHHAGRPKVKHNKPkVTTDSEGWSTLDNKKDVA 93 
                 9************888.89***********************.......**************************543333***************963 PP

       CAF20  99 fgeeaseekdkfresv...............aasaaqetvkvkpnnknlgSskpvDprdiiadkqtktFNAFaALe 159
                    e+se  d +++++               +a++aqet+kv+pnnkn+gSs+p+D++di+adkq+++FNAFaALe
  CCD24904.1  94 ---EESEVVDGATTTAagttsngntrsspvpSATIAQETLKVRPNNKNIGSSRPADTKDIVADKQIHGFNAFAALE 166
                 ...33344444333334566778888889999*******************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       558  (0.0311228); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1251.36
//
Query:       CCD24905.1  [L=672]
Description: hypothetical protein NDAI_0E00890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-97  325.5   7.8      4e-97  325.5   7.8    1.6  2  BRO1            BRO1-like domain
    1.6e-29  103.2  19.6    6.6e-17   61.7  13.8    2.5  3  ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
  ------ inclusion threshold ------
      0.096   12.6   3.8        3.5    7.6   0.1    3.1  2  Elf4            Early Flowering 4 domain
       0.23   11.7   8.2       0.26   11.5   6.5    2.0  2  YlbD_coat       Putative coat protein
       0.48   11.1   4.3       0.22   12.2   1.3    2.1  2  RRP14           60S ribosome biogenesis protein Rrp14


Domain annotation for each model (and alignments):
>> BRO1  BRO1-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.5   7.8  1.1e-100     4e-97       1     389 []       4     365 ..       4     365 .. 0.93
   2 ?   -3.7   0.1       1.1   3.8e+03     146     174 ..     617     643 ..     610     664 .. 0.44

  Alignments for each domain:
  == domain 1  score: 325.5 bits;  conditional E-value: 1.1e-100
                 XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX.. CS
        BRO1   1 llsiplKkteekevdlkkpLknyIsetygsqdpeafeddlaelnklRqdavrksankdsesglelllkYyaqLellelrfpieeqslkveFtWydaf.. 97 
                 ll+ip+K++   ++dl ++L+++I+ t + q+++ f++dl+ +++ R+ +++++    s ++l+ll++Yy+q+++le++fp++    ++eF+W++++  
  CCD24905.1   4 LLAIPFKRS--LQIDLNSELSKLIDFTTY-QTSSFFQNDLQLISNNRNLILNPDL---SIESLNLLKTYYQQICQLERKFPSN----QIEFSWFQTLsl 92 
                 799******..77*************996.99*****************997644...699********************85....8*********85 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXX..XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        BRO1  98 ssskkvtqsslafEkasvLFniaalysqla..asqnrstdeglkrackyfqqAAgvfqylkenflhapteeesedlspetlkaLeklmlAqAqecflek 194
                 + s+ ++ +s+++Ek+++L+ni+alys la  +  +  +de+lk  c+yfq++A vf+yl + + ++pt+ee + +++ t++aL++lmlAqAqecf+ k
  CCD24905.1  93 K-STGSSYKSFQWEKLNILYNIGALYSFLAidTTATTGDDESLKLKCNYFQSSATVFDYLFSLHESNPTTEEYKLMDKHTIHALKYLMLAQAQECFWFK 190
                 4.77799***********************544456699***********************999999999999************************* PP

                 X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS
        BRO1 195 a.ikdnkkdsliaKlaaqvaelYeealealkkselidekeevlkklldksWikhvqvKashfkAlaqyrqalaaeeakkyGeeiarlqkAlellkealk 292
                 a +++n+kdsli++l++q++ +Y++al++ k s+l           + k+W +h++ K ++f+A++ yr+al   ++k+yG  i+ l ++++++k++  
  CCD24905.1 191 AtLSNNYKDSLISRLSSQIVVYYKSALKWSKLSSL-----------IRKDWCDHIESKIHYFNAVTLYRRALTFGSEKEYGSMIRALLSSQSEIKSC-- 276
                 *9999*************************55444...........666************************************************.. PP

                 ..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHH CS
        BRO1 293 skkaeelledlkglkdvveeklkeaekDNdlIYheevPsesslp.eikkaslvkaipleeekeeekseesgkdlFakLvPlsvheaasayserkaklv 389
                        l++ +++++++e++lk++e+DNd+I ++ vP  +++p  ik+a++vk+ p+ee   + +++++ + lF++L+P+ v+e+++ay+er+++++
  CCD24905.1 277 ------KLDSRASFQRKIEQELKDMERDNDFIHLQLVP--DTIPtTIKPADMVKVFPIEEVI-PMAPSTTTTTLFNDLIPITVMESSEAYNERQNTYI 365
                 ......47899***************************..789967************6633.357788999**********************9986 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.1
                 XXXXXXXXXXXXXXXXXX....XXXXXXX CS
        BRO1 146 qqAAgvfqylkenflhapteeesedlspe 174
                 q+++ +++ lk+n+++    +   dl ++
  CCD24905.1 617 QHSSNLLNELKQNIIEGA--KFYVDLAKS 643
                 333333333333333322..222233333 PP

>> ALIX_LYPXL_bnd  ALIX V-shaped domain binding to HIV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.98   3.5e+03     149     164 ..     278     293 ..     137     302 .. 0.64
   2 !   44.5   0.0   3.4e-15   1.2e-11      17     107 ..     403     494 ..     382     500 .. 0.92
   3 !   61.7  13.8   1.8e-20   6.6e-17     148     295 .]     513     661 ..     508     661 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.98
  ALIX_LYPXL_bnd 149 ldelkaereqllkdlk 164
                     ld+  + +++++++lk
      CCD24905.1 278 LDSRASFQRKIEQELK 293
                     2333333344444444 PP

  == domain 2  score: 44.5 bits;  conditional E-value: 3.4e-15
  ALIX_LYPXL_bnd  17 gglqrlekllqdlqelkerneeiLdeieklLdeEesedeklrakygt.rWtrqpSseltaelraelqkyreileeAsesDkivrqklqenke 107
                     + l ++e+++ dl++++ ++e+ L++i++lL+ E+  d+++r+k+gt  Wt ++S+ +++++ ++l+ ++++l+ A+ +Dk  r+ +  ++ 
      CCD24905.1 403 EELFEIESSFTDLETNNPSIESYLTNIRQLLQSESHLDDQYRSKHGTlHWTLPESKVVNSSFFEKLDILQKYLNDAKLTDKNNRELFGTIDV 494
                     556789*****************************************66********************************99998877765 PP

  == domain 3  score: 61.7 bits;  conditional E-value: 1.8e-20
  ALIX_LYPXL_bnd 148 kldelkaereqllkdlkekaendDitpklltekkrdiaanefealfeeelekydplqeqleqslakqeellkeiqeaneefeqskksdseq..sq 240
                     + ++l +ere+++ ++k k+ n  + pk+++e+k++++ n  e++f ++l+ + ++ + +++++++ +el+++i++ ne+ +++ ++++      
      CCD24905.1 513 RAQQLINERESRITEIKLKSDNHKVLPKIISEYKKNGEHNL-ESVFMDHLKYFHDDLKFVQEEKRRNSELIQDIEDENEKKNEKESQSQTRmeRL 606
                     6799*******************************999888.9********************************99998877776666444337 PP

  ALIX_LYPXL_bnd 241 rqreevlqkleaaydkykelksnleeglkFYndltelleklqkkvkdfvfaRrtE 295
                       r+  +++l+ + +  +elk+n+ eg kFY dl++  ++l+   ++fv++R++E
      CCD24905.1 607 DPRKLYIEDLQHSSNLLNELKQNIIEGAKFYVDLAKSTNQLLHATQQFVSNRKEE 661
                     889999***********************************************98 PP

>> Elf4  Early Flowering 4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.6     0.011        40       8      39 ..     562     593 ..     557     602 .. 0.81
   2 ?    7.6   0.1   0.00098       3.5      42      79 ..     615     652 ..     610     656 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.011
        Elf4   8 qtlsksfrqvqsvLdqNrlLIqevneNhesri 39 
                 + +++ ++ vq+   +N  LIq++ +  e + 
  CCD24905.1 562 KYFHDDLKFVQEEKRRNSELIQDIEDENEKKN 593
                 67888999999999**********98766554 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00098
        Elf4  42 nlsrnvaLirelNgNIskvvslYsdLslsfsksveass 79 
                 +l +   L++el +NI    + Y dL+ s ++ ++a++
  CCD24905.1 615 DLQHSSNLLNELKQNIIEGAKFYVDLAKSTNQLLHATQ 652
                 6777788*********************9999988876 PP

>> YlbD_coat  Putative coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         4   1.4e+04      84     106 ..     422     444 ..     411     449 .. 0.56
   2 ?   11.5   6.5   7.3e-05      0.26      11     102 ..     539     631 ..     534     662 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4
   YlbD_coat  84 lqehlnqlskalasvqelikqfq 106
                 +++ l+++ + l+s ++l  q+ 
  CCD24905.1 422 IESYLTNIRQLLQSESHLDDQYR 444
                 45555555555555555544554 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.3e-05
   YlbD_coat  11 pklikevrk.gektlqelyeewallGeddeiweeykekeeekkesksekkkkeekkkdllsqllnllkkldvdklq.ehlnqlskalasvq.eli 102
                 pk+i+e +k ge++l +++ ++  + +dd ++ + +  + +++e  ++ ++++ekk++  sq  + +++ld+ kl  e l++ s+ l++++ ++i
  CCD24905.1 539 PKIISEYKKnGEHNLESVFMDHLKYFHDDLKFVQEE--KRRNSELIQDIEDENEKKNEKESQSQTRMERLDPRKLYiEDLQHSSNLLNELKqNII 631
                 8999998652799*******************9944..445555556666678888888888889999999999964889999999999851444 PP

>> RRP14  60S ribosome biogenesis protein Rrp14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.3     6e-05      0.22      28      61 ..     575     608 ..     563     609 .. 0.81
   2 ?   -3.5   0.1       4.9   1.7e+04      18      32 ..     634     645 ..     634     664 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6e-05
       RRP14  28 eednskklkkqkkkkakkqtkeeskkaKraKLDP 61 
                 ++ ns+ +++ + +++kk+ ke++ + ++++LDP
  CCD24905.1 575 KRRNSELIQDIEDENEKKNEKESQSQTRMERLDP 608
                 4556667888899999****************** PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.9
       RRP14  18 akfYlpkdeeeedns 32 
                 akfY+   +    ++
  CCD24905.1 634 AKFYVDLAKS---TN 645
                 6888874422...22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1791  (0.099894); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 4793.33
//
Query:       CCD24906.1  [L=428]
Description: hypothetical protein NDAI_0E00900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-67  227.4   0.2      2e-67  227.4   0.2    1.6  2  IPPT            IPP transferase
    4.1e-05   23.1   0.1    0.00037   20.0   0.0    2.5  3  IPT             Isopentenyl transferase
     0.0022   18.2   0.1     0.0066   16.6   0.0    2.0  2  AAA_33          AAA domain
     0.0037   16.6   0.3       0.16   11.2   0.0    2.4  2  Zeta_toxin      Zeta toxin
      0.005   17.4   0.0      0.025   15.1   0.0    2.3  2  AAA_18          AAA domain
  ------ inclusion threshold ------
      0.031   14.2   0.4      0.093   12.6   0.1    1.9  2  RsgA_GTPase     RsgA GTPase
      0.041   14.3   0.1       0.17   12.3   0.0    2.1  1  RNA_helicase    RNA helicase
      0.047   13.4   0.0      0.089   12.5   0.0    1.5  1  Cytidylate_kin  Cytidylate kinase
      0.058   12.8   0.5       0.24   10.8   0.4    1.9  2  ParA            NUBPL iron-transfer P-loop NTPase
       0.14   11.7   0.1       0.33   10.5   0.0    1.6  2  Hpr_kinase_C    HPr Serine kinase C-terminal domain
       0.14   11.2   0.2       0.27   10.2   0.2    1.5  1  T2SSE           Type II/IV secretion system protein
       0.19   11.2   0.0       0.35   10.4   0.0    1.3  1  AAA_25          AAA domain
       0.24   11.5   0.5        0.6   10.2   0.5    1.7  1  CbiA            CobQ/CobB/MinD/ParA nucleotide binding domain
        8.2    6.9   6.0        6.3    7.3   2.2    2.5  2  ABC_tran        ABC transporter


Domain annotation for each model (and alignments):
>> IPPT  IPP transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       4.7     6e+03      44      64 ..       2      22 ..       1      24 [. 0.77
   2 !  227.4   0.2   1.6e-70     2e-67       1     224 [.      49     298 ..      49     300 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.7
                HHHHHHHHHHTT-EEEEEES- CS
        IPPT 44 alkaieeilargkipilvGGT 64
                ++k+i++i+   k +i++ GT
  CCD24906.1  2 IRKTIQRIMPTAKKVIVIAGT 22
                578899999988888888777 PP

  == domain 2  score: 227.4 bits;  conditional E-value: 1.6e-70
                 TTBTT-HTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTG-S--B--HHHHHHHHHHHHHSHHH CS
        IPPT   1 qvYrgmdIgTakptaeeragvphhlidildpdeeysvadFqkdalkaieeilargkipilvGGTglYikallegldelpeadeelraeleeeaeeegle 99 
                 qvY++++I+++k+   er+g+phh+i+++d+++ey +++F++++l++ieei++rgkipi+vGGT++Y++al+++   +++ ++el ++ +e +++++ +
  CCD24906.1  49 QVYKDIPIISNKHPIGEREGIPHHVINHIDWTDEYYLHKFEEECLQTIEEIHSRGKIPIIVGGTHYYLQALFNKK--VETGSRELAKKESEILNSNDPN 145
                 9***********************************************************************875..4444556666655546677788 PP

                 HHHHHHHHC-HHHHTTS-TT-HHHHHHHHHHHHHHSS-HH............ECEEEEEECSHHHHHHHHHHHHHHHHHTTHHHHHHHHHH........ CS
        IPPT 100 alheelkevdpeaaakihpndrqRiiRalevyeetgkpls............ellviglesdreelyeridkRvdemleaGlleEveklla........ 178
                  +++ l  vdp+ a+k hp+d++R++R le+y++tgk+ s            ++l+++l+sd   l++r+d+Rvd+mle+G ++E+++l++        
  CCD24906.1 146 LIYQTLMVVDPDIAKKYHPHDTRRVQRMLEIYYTTGKKPSemyndqqltlryNTLFLWLYSDPIPLDKRLDDRVDAMLESGGMDEINQLYSyykennfk 244
                 8***********************************999989999888888767*****99*****************************877777776 PP

                 .....C.CCCSTTSHHHHHHHTTS..S-HHHHHHHHHHHHHHHHHHHHHHHHTT CS
        IPPT 179 .....k.alqaigykelleylege..lsleeaieklkaatrqyaKrQltWfrkk 224
                      + ++q ig+ke+l++le++  ++lee+++k+k++trqyaK+Q++W+rk+
  CCD24906.1 245 peqceNgVWQVIGFKEFLPWLEKSsgVTLEECVDKMKIRTRQYAKKQVKWIRKM 298
                 66555445*************9852258************************87 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.9e-07   0.00037       2      45 ..      15      58 ..      14      70 .. 0.91
   2 ?   -3.7   0.0       4.8   6.2e+03     133     145 ..     164     176 ..     156     181 .. 0.68
   3 ?   -0.4   0.0      0.47     6e+02     122     149 ..     279     305 ..     263     346 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 2.9e-07
         IPT  2 evylifGatttGKtaeaiklaketgapvivlDRvqcyselavgs 45
                +v +i G+t++GK++ +i+la +    +i  D +q y+++ + s
  CCD24906.1 15 KVIVIAGTTGVGKSQLSIQLATKFNGEIINSDSMQVYKDIPIIS 58
                6789***********************************98766 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.8
         IPT 133 akakkRvrqmlrp 145
                  +  +Rv++ml++
  CCD24906.1 164 PHDTRRVQRMLEI 176
                 4556788888875 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.47
         IPT 122 rlrlpdedvflakakkRvrqmlrpeeeg 149
                 ++++  +  + +k+ k +r+ml p+ +g
  CCD24906.1 279 KMKIRTR-QYAKKQVKWIRKMLIPDING 305
                 5555544.58888999999999887654 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.2e-06    0.0066       1      33 [.      16      65 ..      16     151 .. 0.65
   2 ?   -3.3   0.2       7.4   9.4e+03     111     136 ..     397     421 ..     394     424 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.2e-06
      AAA_33  1 lvllvGlpGsGKstlaerllkklgavllssdt.................l 33
                ++++ G  G+GKs+l+ +l+ k  +++++sd+                 +
  CCD24906.1 16 VIVIAGTTGVGKSQLSIQLATKFNGEIINSDSmqvykdipiisnkhpigE 65
                7999***************************9776666666555555552 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 7.4
      AAA_33 111 lkeRlakRaangddrsevpeealdrq 136
                 lk+R +kR+ +++++ ++  e +++q
  CCD24906.1 397 LKSRRHKRNLTRGVK-KAQYEKWKAQ 421
                 678888888887643.4444444444 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00013      0.16      14      48 ..      12      44 ..       2      59 .. 0.80
   2 ?    2.9   0.0     0.044        56      43      61 ..     148     166 ..     136     200 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
  Zeta_toxin 14 erPklillgGqpGAGKselaellkdelerqgnvvr 48
                  +k+i+++G +G GKs+l+  l++++  +g+++ 
  CCD24906.1 12 TAKKVIVIAGTTGVGKSQLSIQLATKF--NGEIIN 44
                57899***************9999999..676653 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.044
  Zeta_toxin  43 qgnvvrldpDdlRelhPey 61 
                 ++   ++dpD  +++hP+ 
  CCD24906.1 148 YQTLMVVDPDIAKKYHPHD 166
                 567789***********93 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     2e-05     0.025       1      25 [.      17      50 ..      17     106 .. 0.65
   2 ?   -3.2   0.0       9.2   1.2e+04      15      34 ..     128     145 ..     126     175 .. 0.52

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf.........g 25
                I+++Gt GvGK++l+  L+ + +          +
  CCD24906.1 17 IVIAGTTGVGKSQLSIQLATKFNGeiinsdsmqV 50
                99****************9986224555555552 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9.2
      AAA_18  15 akeLskrlgfgvnlrdvake 34 
                 ++eL+k++  +++l+++ ++
  CCD24906.1 128 SRELAKKE--SEILNSNDPN 145
                 57777776..3333333333 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   7.3e-05     0.093      98     122 ..      13      37 ..       3      52 .. 0.81
   2 ?   -2.3   0.0       2.9   3.7e+03      54      74 ..     364     387 ..     304     412 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.3e-05
                  TTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  98 kdktsvlvGqSGvGKStLinallpe 122
                  ++k++v++G +GvGKS L  +l+ +
   CCD24906.1  13 AKKVIVIAGTTGVGKSQLSIQLATK 37 
                  5689**************9888776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.9
                  E-GGG--HHH...HHHHHHHHHHH CS
  RsgA_GTPase  54 nKiDlleeee...eleelkeelea 74 
                  nK++ +e+      ++++ e+l+a
   CCD24906.1 364 NKTEACEQFIceiCCDQQGEKLRA 387
                  333333322222233344444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00014      0.17       1      35 [.      17      51 ..      17      62 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00014
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkkdsvy 35
                  i++ G +g+GKS+l+ +La+++ +++ +  + +vy
    CCD24906.1 17 IVIAGTTGVGKSQLSIQLATKFNGEIINSDSMQVY 51
                  7899*******************999555555555 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.9e-05     0.089       1      61 [.      17      93 ..      17     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.9e-05
                    EEEE-STTSSHHHHHHHHHHHHT-EEEEHHHH..HHHHHHHHHHT..............T--TT-HHHHHHHHHT-- CS
  Cytidylate_kin  1 iaiDGPagsGKssvaralaeklglkyldtgal..YRalalaalrr..............kvdlldeaalvelakeve 61
                    i i G +g GKs ++ +la+k++ +++++ ++  Y+ +  ++ ++              ++d +de +l ++ +e  
      CCD24906.1 17 IVIAGTTGVGKSQLSIQLATKFNGEIINSDSMqvYKDIPIISNKHpigeregiphhvinHIDWTDEYYLHKFEEECL 93
                    67899**********************98765449999999988899999999999999999999999999887754 PP

>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   0.00018      0.24       4      29 ..      14      39 ..      12      47 .. 0.88
   2 ?   -1.2   0.0      0.89   1.1e+03     173     235 ..     267     331 ..     261     339 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
        ParA  4 kviavlSgKGGVGKStvavnlAlaLa 29
                k+++v++g  GVGKS ++++lA++++
  CCD24906.1 14 KKVIVIAGTTGVGKSQLSIQLATKFN 39
                6789999***************9876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.89
        ParA 173 Nmsgfvcpkcgekteifgkgggeklaeelgvpllgeipldpeireasdegk..plvlkepeseaa 235
                   sg++ ++c +k++i +++ ++k  + +   l+ +i  d  i +asd  k  ++v k+ +s a+
  CCD24906.1 267 KSSGVTLEECVDKMKIRTRQYAKKQVKWIRKMLIPDINGDIYILNASDLDKwqNIVSKRANSIAE 331
                 56788899999999999999999999999999999999888888877655511455555444443 PP

>> Hpr_kinase_C  HPr Serine kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00025      0.33      21      55 ..      17      52 ..      12      75 .. 0.80
   2 ?   -3.9   0.0       6.9   8.8e+03     142     167 ..     347     372 ..     332     373 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00025
                  EEEEESTCHHHHHHHHHHHTTT-.EEEEESSEEEEE CS
  Hpr_kinase_C 21 vLitGesgvGKselaleLikrgh.rLvaDDaveikr 55
                  ++i G+ gvGKs+l+++L ++    ++  D +++++
    CCD24906.1 17 IVIAGTTGVGKSQLSIQLATKFNgEIINSDSMQVYK 52
                  789***************998554899999998887 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6.9
                   -HHHHHHHHHHHHHHHHTT--HHHHH CS
  Hpr_kinase_C 142 nlaviieaaalnlrlkkkgydaakel 167
                   +l+ +++ + +++++k++ ++a +++
    CCD24906.1 347 ELSHLLDGIEMSTKVKQNKTEACEQF 372
                   56677777778888888888777776 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00021      0.27     116     152 ..       4      37 ..       1      47 [. 0.81

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00021
       T2SSE 116 ekiaevlrkavrerglilvsGgTgsGKttllyallke 152
                 ++i++++ +a   +++i+++G+Tg GK+ l   l ++
  CCD24906.1   4 KTIQRIMPTA---KKVIVIAGTTGVGKSQLSIQLATK 37 
                 6788899999...**************9876655555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00027      0.35      32      55 ..      13      36 ..       2      40 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00027
      AAA_25 32 agelallaGapgtGKttlaldlal 55
                a++++++aG +g+GK+ l ++la 
  CCD24906.1 13 AKKVIVIAGTTGVGKSQLSIQLAT 36
                67899*****************96 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.5   0.00046       0.6       1      24 [.      16      39 ..      16      43 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00046
                EEEEESSTTSSHHHHHHHHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  1 iaiastkGGvGKTtlaanLarala 24
                +++++++ GvGK+ l++ La+ ++
  CCD24906.1 16 VIVIAGTTGVGKSQLSIQLATKFN 39
                68999***************9875 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.2     0.005       6.3      11      50 ..      14      49 ..      11     194 .. 0.84
   2 ?    0.4   0.1      0.69   8.9e+02      32      80 ..     296     362 ..     278     413 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.005
                TSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGG CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 11 gekvaivGenGaGKStLlkllagllkpteGeilldgkdlk 50
                 ++++i G +G GKS L   la +    +Gei +++++++
  CCD24906.1 14 KKVIVIAGTTGVGKSQLSIQLATKF---NGEI-INSDSMQ 49
                6899************987777776...4777.5544444 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.69
                 TTSS--.SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..................H CS
                 xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................x RF
    ABC_tran  32 agllkp.teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..................e 80 
                  ++l p  +G+i + +++  ++  ++++k+   + +e ++++++ ++e+                  +
  CCD24906.1 296 RKMLIPdINGDIYILNASDLDKWQNIVSKRANSIAEE-FVNDTTIIEERapvelshlldgiemstkvK 362
                 5555554788888776665556777888888888887.444444355555555555555554433330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1234  (0.068827); expected 358.6 (0.02)
Passed bias filter:                      673  (0.037537); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.37
# Mc/sec: 3426.25
//
Query:       CCD24907.1  [L=464]
Description: hypothetical protein NDAI_0E00910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-24   85.7   0.2    5.7e-24   84.4   0.2    1.7  1  NLE          NLE (NUC135) domain
    1.2e-23   82.9  12.1    6.7e-07   29.9   0.1    6.8  7  WD40         WD domain, G-beta repeat
    8.8e-09   34.5   7.3    0.00023   19.9   0.2    3.7  4  Nup160       Nucleoporin Nup120/160
     0.0062   16.8   0.3      0.089   13.1   0.0    2.7  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.049   13.0   0.6        0.5    9.6   0.2    2.4  2  WD40_like    WD40-like domain
       0.98    9.2   4.9       0.24   11.2   0.2    2.3  3  Phyto-Amp    Antigenic membrane protein of phytoplasma
        6.9    6.5   9.0        3.7    7.4   4.2    2.5  2  PYST-C1      Plasmodium yoelii subtelomeric region (PYST-C1)


Domain annotation for each model (and alignments):
>> NLE  NLE (NUC135) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.2   2.2e-27   5.7e-24       2      65 .]      13      76 ..      12      76 .. 0.95

  Alignments for each domain:
  == domain 1  score: 84.4 bits;  conditional E-value: 2.2e-27
         NLE  2 qvrFvtkdedeslavpgtplsvPasltrkqLselvnkLlkee.kpvpFdFlidgellrtsLeehL 65
                ++rF+t+++desl+v++tp+ vP++l+r++Lse+vn++l+ + +p+pFdFl+dgellrtsL+e+L
  CCD24907.1 13 KIRFFTREKDESLHVQDTPMYVPITLKRYGLSEIVNHILE-SpTPIPFDFLVDGELLRTSLQEYL 76
                79******99******************************.4477******************97 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.8   0.00014      0.36      11      38 .]     108     137 ..      99     137 .. 0.81
   2 !   24.6   0.0   1.3e-08   3.3e-05       2      38 .]     141     177 ..     140     177 .. 0.89
   3 !   12.2   0.0   0.00011      0.27       1      37 [.     200     237 ..     200     238 .. 0.80
   4 ?    4.9   0.0     0.021        55       6      38 .]     285     319 ..     280     319 .. 0.72
   5 ?   -2.9   0.0       6.1   1.6e+04      22      29 ..     344     351 ..     334     359 .. 0.76
   6 !   29.9   0.1   2.6e-10   6.7e-07       4      38 .]     372     408 ..     370     408 .. 0.88
   7 ?    1.3   0.0      0.29   7.5e+02      13      36 ..     433     455 ..     422     455 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
                 SSEEEEEEETTSSE..EEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgaw..lasGsdDgtvriWd 38 
                 ++++sl++s+d +   ++sGs+Dg vr W+
  CCD24907.1 108 DWISSLDVSRDTDNkaIISGSYDGVVRTWN 137
                 459999999999997778***********8 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 1.3e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + ++ ++GH +++ +++f ++ +++++G  D+t+r+W+
  CCD24907.1 141 KVQKQYSGHsGPIKAVKFISNTRLVSAGN-DRTLRLWK 177
                 77899****777************98777.*******6 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 0.00011
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 g++l +l+GH  +v sl++s   + ++s+s+D+ + +W
  CCD24907.1 200 GKTLAILEGHkAPVVSLDVSIPTSRILSSSYDNAIGFW 237
                 678999****77799**96666666668888****999 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.021
                 EEESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 
                  l+ H  +v    f+ + + +  s s D+t++ Wd
  CCD24907.1 285 LLESHtAPVEQTNFDINDNTVgYSVSQDHTIKTWD 319
                 566776668666677788886445589*******9 PP

  == domain 5  score: -2.9 bits;  conditional E-value: 6.1
                 SSEEEEEE CS
        WD40  22 gawlasGs 29 
                  ++la+Gs
  CCD24907.1 344 LNLLACGS 351
                 47899997 PP

  == domain 6  score: 29.9 bits;  conditional E-value: 2.6e-10
                 EEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 ++ l GH ++v sl+++p++ + l+sGs Dgtv++Wd
  CCD24907.1 372 QQQLIGHkNFVVSLDTCPENEYmLCSGSHDGTVKVWD 408
                 56789**99999**********4458899*******9 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 0.29
                 EEEEEEETTSSE.....EEEEETTSEEEE CS
        WD40  13 vtslafspdgaw.....lasGsdDgtvri 36 
                 v ++      +w     ++sG+ D+++ i
  CCD24907.1 433 VLAV------RWaekvgIISGGQDKKIQI 455
                 6677......7777777789*****9976 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.13   3.3e+02     226     251 ..     116     142 ..     102     152 .. 0.82
   2 ?    2.2   0.3     0.022        56     229     258 ..     160     189 ..     141     206 .. 0.78
   3 !   19.9   0.2   9.1e-08   0.00023     201     256 ..     269     330 ..     245     340 .. 0.85
   4 !   13.7   0.0   7.2e-06     0.018     214     259 ..     380     421 ..     343     437 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.13
                 ....TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 226 vei.gqtylfalsrdgkLrvWnlltgk 251
                 ++  +++ + + s dg++r Wn + + 
  CCD24907.1 116 SRDtDNKAIISGSYDGVVRTWNMDGKV 142
                 4445888999999*********99775 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.022
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE- CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatidl 258
                  +t l+++  d++Lr+W ++++++  +  +
  CCD24907.1 160 SNTRLVSAGNDRTLRLWKTKNDQLNNSNAT 189
                 5677899999***********998766544 PP

  == domain 3  score: 19.9 bits;  conditional E-value: 9.1e-08
                 T..TSS--SS---TT-ECEEEEET.........TTTEEEEEETT-EEEEEETTTTEEEEE.E CS
      Nup160 201 g.lladpsrrksgasvalsldvavavvei....gqtylfalsrdgkLrvWnlltgkclat.i 256
                 + +l+d ++r++++   l++++a+ + +     ++t+ +++s+d++++ W+l t++c+ t i
  CCD24907.1 269 KlTLKDGTIRRRAPLALLESHTAPVEQTNfdinDNTVGYSVSQDHTIKTWDLVTARCVDTkI 330
                 34689999999999999999999966655899999999********************9955 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 7.2e-06
                 T-ECEEEEET.....TTTEEEEEETT-EEEEEETTTTEEEEEEE-- CS
      Nup160 214 svalsldvavavveigqtylfalsrdgkLrvWnlltgkclatidll 259
                 ++ +sld+ +   e ++ +l++ s dg+++vW++++ ++++ti+  
  CCD24907.1 380 NFVVSLDTCP---E-NEYMLCSGSHDGTVKVWDVRSSSPMYTITRE 421
                 4446666666...5.899************************9865 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.29   7.4e+02      35      76 ..     147     187 ..     116     215 .. 0.67
   2 !   13.1   0.0   3.5e-05     0.089       5      91 ..     342     440 ..     339     441 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.29
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  +++++ ++++++  + + L+ a +d ++rl + ++ ++ +s 
   CCD24907.1 147 SGHSGPIKAVKFISNTR-LVSAGNDRTLRLWKTKNDQLNNSN 187
                  44555666666655443.556666677777776666665555 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 3.5e-05
  ANAPC4_WD40   5 ptmDLiAlatedgellvf..Rlng..qrvwtleedkedsevrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvksek.......avtclgWg 90 
                  pt +L+A +++  ++ ++  R++    ++ + +  ++++ v sL   p ++ +L+ + +dg+v++ d+ s   + +++ ++++       +v  + W+
   CCD24907.1 342 PTLNLLACGSSARHITLHdpRMDSssSKITQQQLIGHKNFVVSLDTCPeNEYMLCSGSHDGTVKVWDVRSSSPMYTITREDKSvkkgindKVLAVRWA 439
                  88899999999999999866775444888888888999999999876526789************************999998889999999999997 PP

  ANAPC4_WD40  91 e 91 
                  e
   CCD24907.1 440 E 440
                  6 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2    0.0002       0.5      89     133 ..     118     162 ..     101     360 .. 0.81
   2 ?    1.5   0.0     0.057   1.5e+02       5      45 ..     384     425 ..     380     454 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0002
   WD40_like  89 kviddklliGtnkGsiyvfskdlqleevllgqsseIkeikiennk 133
                 +++++ ++ G++ G + +++ d ++++ ++g+s +Ik +k ++n+
  CCD24907.1 118 DTDNKAIISGSYDGVVRTWNMDGKVQKQYSGHSGPIKAVKFISNT 162
                 456677888999***************************998654 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.057
   WD40_like   5 sidiskkgslil.yGgkddkctvlkleslesvsivesfedSv 45 
                 s+d  ++++++l  G++d +++v +++s   ++ ++  + Sv
  CCD24907.1 384 SLDTCPENEYMLcSGSHDGTVKVWDVRSSSPMYTITREDKSV 425
                 778887777765158888899999999999999998887777 PP

>> Phyto-Amp  Antigenic membrane protein of phytoplasma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.7   4.4e+03      57      74 ..     169     186 ..     158     207 .. 0.73
   2 ?   11.2   0.2   9.4e-05      0.24     117     184 ..     258     331 ..     254     338 .. 0.83
   3 ?   -3.1   0.1       2.3   5.9e+03      61      88 ..     404     433 ..     399     450 .. 0.61

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.7
   Phyto-Amp  57 aekvvkqwkvqntslnak 74 
                  ++ ++ wk +n  ln  
  CCD24907.1 169 NDRTLRLWKTKNDQLNNS 186
                 567788899999888754 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 9.4e-05
   Phyto-Amp 117 nkltlgtekkltltvkdgkvdaeaglkalkeagakvpat...vnkddvtftvgkddaank...vtvkavdgktv 184
                 nk++  ++k+  lt+kdg +   a l  l+   a v  t   +n + v ++v +d + +    vt + vd k +
  CCD24907.1 258 NKISTAAKKRRKLTLKDGTIRRRAPLALLESHTAPVEQTnfdINDNTVGYSVSQDHTIKTwdlVTARCVDTKIT 331
                 8999999***********************9999998875557999999***9998643223388888887765 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.3
   Phyto-Amp  61 vkqwkvqntslnakvt..kdsvkvavaddk 88 
                 vk w+v+ +s    +t  + svk    d+ 
  CCD24907.1 404 VKVWDVRSSSPMYTITreDKSVKKGINDKV 433
                 677777777766666522345555544443 PP

>> PYST-C1  Plasmodium yoelii subtelomeric region (PYST-C1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   4.2    0.0014       3.7      31      48 ..     181     198 ..     169     203 .. 0.85
   2 ?    0.4   0.1      0.21   5.4e+02      13      33 ..     250     270 ..     245     273 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0014
     PYST-C1  31 tqLkNnNpkDdkddkddk 48 
                  qL+N+N  +++dd+d +
  CCD24907.1 181 DQLNNSNATEQDDDEDVE 198
                 5********999999977 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.21
     PYST-C1  13 ikeInrsNekndIeskhetqL 33 
                  +eI++ + k++++ k++ +L
  CCD24907.1 250 MEEIKNPDNKISTAAKKRRKL 270
                 589999999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3400.85
//
Query:       CCD24908.1  [L=418]
Description: hypothetical protein NDAI_0E00920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-37  127.5  13.1    5.3e-37  127.5  13.1    1.4  2  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin
  ------ inclusion threshold ------
        3.5    8.2   5.7        5.2    7.7   3.0    2.6  2  B_lectin        D-mannose binding lectin


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.5  13.1   5.9e-41   5.3e-37       4     319 ..      16     333 ..      12     340 .. 0.82
   2 ?   -3.2   0.2      0.35   3.1e+03      79     169 ..     367     377 ..     355     393 .. 0.49

  Alignments for each domain:
  == domain 1  score: 127.5 bits;  conditional E-value: 5.9e-41
  Hyphal_reg_CWP   4 lialalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitstssllalsvtlasatgsieNnGiivf.nseeslt 97 
                      +++ + l++s++t   ++ ++ +gd+ + +g++l i+++    + +  ++ nng+l+i +t+++  +s++   + ++ieN+G +++ n+++  +
      CCD24908.1  16 AATSSAVLQVSSDTLYSEQRTI-VGDVIVMDGSSLLITHDPELGILSG-TISNNGNLCIGTTDTTSIMSID--ILATNIENKGNLIIdNGVAGDK 106
                     3445555669999998888887.5*******************99884.9*********************..7889**********55566666 PP

  Hyphal_reg_CWP  98 assyklvgasFeNnGelylagsgsvvastmeitsnsweNnGlivfyqsqrss..gtvklgaalgsitNdGqIclknqayqqttsiqGsGCitvge 190
                     ++++k+  as+ N+G+l ++ ++s   +++++t ns+ N+G++ +++ + +   g+++++++++ itN+G+I ++ ++++++  i+G GCi  +e
      CCD24908.1 107 TTTVKV--ASLDNSGNLLIDLKDS--MESLTVT-NSFVNTGYMSLSHVTLQGydGVFTFKGPTSGITNSGTIDVSGTNITIDYPISGGGCIYGNE 196
                     777777..9**************6..5666666.9**********9987665559************************************9999 PP

  Hyphal_reg_CWP 191 dssiyisnsllsissdqtiYLadsssslvvesvsk.pqtfkvagFGngnkigltlpllgl..vlssisYdsdtgiLtlralllsqkFnIGtGYds 282
                       +    n++  +++dqt+++++s+    ++  ++ +    ++gF +gnki++   +++   ++++ sY+ dtgi+t ++ + + + +IG+GYd 
      CCD24908.1 197 WRTDLTVNTN--YQHDQTFWMQKSDRASSITLLGAgKYIPVIRGFNSGNKIQFGRNIQKYdgTITTPSYNPDTGIVTTSNMYGTFQIDIGKGYDG 289
                     8877665655..9********977655555555530555889**************999999899*************987779*********** PP

  Hyphal_reg_CWP 283 skFeivtdagagll...svqngavtYngpv..Ps..rslPsaCq 319
                     sk++  ++++  ++   s++  a+tY ++   P+  +++P++C+
      CCD24908.1 290 SKIKSEQSNSCPTVsdsSCYAPALTYGDDAvePAaaTERPTSCA 333
                     ***8333333222246789999****887544666678888887 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.35
  Hyphal_reg_CWP  79 tgsieNnGiivfnseesltassyklvgasFeNnGelylagsgsvvastmeitsnsweNnGlivfyqsqrssgtvklgaalgsitNdGqIcl 169
                     +                                                                               ++ +N+Gq c+
      CCD24908.1 367 S-------------------------------------------------------------------------------STTNNNGQ-CV 377
                     2...............................................................................33344444.22 PP

>> B_lectin  D-mannose binding lectin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.0   0.00058       5.2      20      79 ..      63     141 ..      46     154 .. 0.74
   2 ?   -3.9   0.0         2   1.8e+04      34      40 ..     210     216 ..     198     228 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00058
    B_lectin  20 kisedgnLvllnesksvvwst..................ssssssakntvaqLldsGnLvl.esssnseevlWqsfdhp 79 
                 +is++gnL++ +++++ + s                    + +++++ +va L +sGnL +  ++s ++ ++ +sf + 
  CCD24908.1  63 TISNNGNLCIGTTDTTSIMSIdilatnienkgnliidngVAGDKTTTVKVASLDNSGNLLIdLKDSMESLTVTNSFVNT 141
                 57777777776666666666566777777777777766666677888889**********9666667777777777665 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2
    B_lectin  34 ksvvwst 40 
                 ++++w+ 
  CCD24908.1 210 DQTFWMQ 216
                 4445544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3145.74
//
Query:       CCD24909.1  [L=317]
Description: hypothetical protein NDAI_0E00930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.3e-119  397.2   0.3   4.8e-119  397.0   0.3    1.0  1  Mtc       Tricarboxylate carrier


Domain annotation for each model (and alignments):
>> Mtc  Tricarboxylate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  397.0   0.3  2.7e-123  4.8e-119       1     301 [.      16     313 ..      16     317 .] 0.97

  Alignments for each domain:
  == domain 1  score: 397.0 bits;  conditional E-value: 2.7e-123
         Mtc   1 yDqstflGRlkhffsvtdprtlllseaeleeakelvekykkgklppelteeelwkakklvdSavHPdtgekillpfRmsafvpvnllitggmltpyktt 99 
                 yD+st++GR++h++++ dp++ll+++++l +a+e++++y++g +  ++ +ee+w akk +dS+vHPdtge+++lpfRms +v++nl++t gmltp  +t
  CCD24909.1  16 YDLSTYWGRIRHCAEISDPTMLLTTKKDLAHAREVISAYRHGLI--KTPTEEFWIAKKHLDSTVHPDTGETVILPFRMSSCVISNLVVTLGMLTPGLGT 112
                 9*****************************************98..44449************************************************ PP

         Mtc 100 pavifwqwanqsfnaavnytNrnasspistsqlltsyvaAttaavgtalglnsllkrlkk.skatksllgrlvPfaavaaancvNiplmRqkelqkGIe 197
                 ++++fwqwanqs+n+avn++N+n+s+++st+ql+t+y+aA+ta++g+alglns++++lk+ +++tk +lgrl+Pfaav++a++vN++lmR +e+qkGI+
  CCD24909.1 113 TGTLFWQWANQSLNVAVNSANANKSHKMSTKQLMTNYAAAVTASCGVALGLNSVVPKLKNvTPNTKLILGRLIPFAAVVTAGIVNVFLMRGNEIQKGIS 211
                 **********************************************************9999************************************* PP

         Mtc 198 VtdeegnelgkSkkaAkkAisqvalsRvlmaapamvlpplimnalekkkflkkrprlaalpiqlllvglvllfalPlalalFpqrssisvskLepelqe 296
                 V+d++g+e+gkSkkaA  A++++alsRv++a+p+mv+ppli+ +l+k +++ k   +++ +++l+l++++++ +lP+al++Fpqr+si+v+kLe+el+ 
  CCD24909.1 212 VYDSNGDEVGKSKKAAFIAVGETALSRVINATPIMVIPPLILVKLQKGALMGKSVGMQT-LANLGLIAATSFAVLPFALGVFPQRQSIHVKKLETELHG 309
                 ***************************************************99988885.9************************************** PP

         Mtc 297 kikkk 301
                 k k+k
  CCD24909.1 310 K-KDK 313
                 9.443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2494.57
//
Query:       CCD24910.1  [L=851]
Description: hypothetical protein NDAI_0E00940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
          0 1018.7   5.5          0 1018.5   5.5    1.0  1  V_ATPase_I  V-type ATPase 116kDa subunit family
      0.003   17.4   0.3     0.0079   16.0   0.3    1.6  1  GIT_CC      GIT coiled-coil Rho guanine nucleotide exchange f


Domain annotation for each model (and alignments):
>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1018.5   5.5         0         0       2     813 .]      37     833 ..      36     833 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1018.5 bits;  conditional E-value: 0
  V_ATPase_I   2 eLGelglvqfrDlnedvnafqrkfvkevrrcdemerklrfleeeieklekavikeeea...............eesleapeekeldeleeelekleeel 85 
                 +LG+lg+vqfrDln+++n+fqr+fv+e+rr+d+++r++r++ + ++k++     e  +               ++    p+++ +d+  ++   le++l
  CCD24910.1  37 TLGQLGIVQFRDLNSETNSFQRTFVDEIRRLDNVQRQYRYFFKLLQKHNIP-LYEGAIeqydrpsnlndanimSQLIVPPSTSAIDDHVQNAALLEQRL 134
                 69*********************************************5555.55444458999*******999899999******************** PP

  V_ATPase_I  86 kelnenleklkkelnelvelkavlekakefleeeeeeeeeeeseeeeeekeeeeeeeseeeeeeelleeeeelsfvaGvikrekveaferilwralrgn 184
                  +++e +e++++++ +l++++ vl++ ++f+++ ++++ ++++          +   +  + e++l++++ +++fv+G+i+r+k+++fe+ilwr+lrgn
  CCD24910.1 135 VQMEEATEQIEAQKVDLEQYRIVLQSGDQFFQSGDSMALAATA----------T--VV--DLEDTLRRSSITINFVTGIIPRDKINTFEQILWRVLRGN 219
                 *******************************865333322111..........1..11..1223344455679************************** PP

  V_ATPase_I 185 lflrqaeieepledpetgekveksvfiiffqgeqlkekikkicesfgaklyelpeseeereeklkeveeriedlekvleqteealkevleeiakeleew 283
                 lf+++ eie+p+ d +t++ + k++fi++ +g+ + ++ik+i+es++a+lye+++++e+r++kl +++e+++dl +vl++t+++l+++l  i +el++w
  CCD24910.1 220 LFFKHIEIEQPIFDVKTQSYIAKNAFIVYSHGDLILDRIKRIAESLDAHLYEIDKNPESRSQKLLKINENLSDLYTVLQSTTTTLESELFGIGQELNSW 318
                 *************************************************************************************************** PP

  V_ATPase_I 284 klkvkkekaiyhtLnlfnldvtkkvliaegWvpkeeleeiqkalkeateessssvpsilneietketpPTyfrtnkfteafQeivdaYGiarYrEvNpa 382
                  + + +ek+ y+tLn+fn+d+++k+liaegW+p++el+ ++++l ++t++ + +vpsi++++ t++tpPT++r nkft+afQ+i+d+YG+++YrEvNp+
  CCD24910.1 319 YQDIAREKSTYETLNKFNFDKNRKTLIAEGWIPEDELSFLKDCLVQMTSKLGVDVPSIIQVLGTNKTPPTFHRLNKFTQAFQSICDSYGVPQYREVNPG 417
                 *************************************************************************************************** PP

  V_ATPase_I 383 lftiitFPFlFavMFGDiGHGlllllfalllvlkekklkkkkkdeilemlfsgRYiillmGlfsiYtGliYNdifskslnlfgSswevkekaveeeelk 481
                 l ti+tFPF+Fa+MFGD+GHG++++++al++vl+ekk++++k++eil+m+++gRYiil+mGlfs+YtG++YNdifs+s++lf+S+we++e+++  e   
  CCD24910.1 418 LPTIVTFPFMFAIMFGDMGHGFIMTMAALVFVLNEKKFDRMKRGEILDMAYTGRYIILFMGLFSMYTGFLYNDIFSRSMTLFKSGWEWPEDFKAGEM-- 514
                 ****************************************************************************************999874433.. PP

  V_ATPase_I 482 kekkeekvYpfGlDpaWklaenellflnSlKmKlsvilGviqMlfgvllslvNalyfkkkldiilefiPqllfllsifgYlvlliiyKWlvdweaekek 580
                    k+  +Yp+G+D+aW++aen+llf+nS+KmKls+++G+i+M++++++slvN+l+fk+++di+++fiP+llf++ ifgYl+++iiyKW+vdw  + + 
  CCD24910.1 515 LYAKKVGTYPIGIDWAWHGAENSLLFSNSYKMKLSIVMGFIHMTYSYMFSLVNHLHFKSMIDIVANFIPGLLFMQGIFGYLSVCIIYKWSVDWIGDGKA 613
                 4788999***************************************************************************************66666 PP

  V_ATPase_I 581 apsllntlinmflskgkvkeeelyegqetvqvvLlllalvcvpvlllvkPlilklkhkkkkkkkekkkeeeeeeeeeeeeeeeeeeeeaeeeeeeeeee 679
                 ap+lln++inmfl++g++ +eely++q++vq++Ll +al+cvp+lll+kPl++k++h++kk++  + ++ e      +++  ++e     +e+e +e+e
  CCD24910.1 614 APGLLNMIINMFLAPGTI-DEELYPHQAKVQIFLLGMALLCVPWLLLMKPLHFKFTHSEKKNSFPTADDIE------TQALLHDE-----NEDEIAETE 700
                 *****************9.99*************************************9776664432221......11111111.....122233344 PP

  V_ATPase_I 680 eeeeeeeeeeeeeeeefdfgevfihqvIhtIEfvLgciSnTASYLRLWALSLAHaqLseVlwemvlkkallksksvlgvillvilfavfavltvavLll 778
                  + ++++++ee e + +++g+v+ihqvIhtIEf+L+c+S+TASYLRLWALSLAHaqLs+Vlw+m+l+ ++    ++lgv+++v lf+++++lt+avL++
  CCD24910.1 701 GTIAANNDSEEGEGHGEELGDVIIHQVIHTIEFCLNCVSHTASYLRLWALSLAHAQLSSVLWSMTLELSF-GVPGALGVFMTVSLFTLWFCLTIAVLVM 798
                 4555666777888999****************************************************76.889************************* PP

  V_ATPase_I 779 meglsafLHaLRLhWVEfqsKFykgdGykFepfsf 813
                 meg+sa+LH+LRLhWVE++sK++ gdG+++epf f
  CCD24910.1 799 MEGTSAMLHSLRLHWVESMSKYFVGDGIPYEPFVF 833
                 *********************************87 PP

>> GIT_CC  GIT coiled-coil Rho guanine nucleotide exchange factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   8.8e-07    0.0079      29      59 ..     277     307 ..     273     308 .. 0.94

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 8.8e-07
      GIT_CC  29 eakiqqLlkvNtslsdelrlLQskvqkLqae 59 
                 e++ q+Llk+N++lsd  + LQs  ++L++e
  CCD24910.1 277 ESRSQKLLKINENLSDLYTVLQSTTTTLESE 307
                 99**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1092  (0.0609069); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5726.61
//
Query:       CCD24911.1  [L=511]
Description: hypothetical protein NDAI_0E00950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-21   75.0  16.3    1.5e-05   25.6   0.5    7.7  8  WD40         WD domain, G-beta repeat
    3.6e-06   25.9   0.7      0.055   12.1   0.1    2.8  3  Nup160       Nucleoporin Nup120/160
     0.0021   18.3   0.2        1.6    9.1   0.1    3.1  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0077   16.9   0.0      0.021   15.4   0.0    1.7  2  AKNA         AT-hook-containing transcription factor
  ------ inclusion threshold ------
      0.025   14.6   0.3       0.06   13.4   0.3    1.6  1  DUF2205      Short coiled-coil protein
      0.028   13.8   2.3       0.43    9.9   0.1    2.9  3  WD40_like    WD40-like domain
       0.14   12.7   0.0       0.67   10.5   0.0    2.2  1  PQQ_3        PQQ-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.7   1.5e+04      12      32 ..     148     167 ..     141     168 .. 0.76
   2 !    6.8   0.0    0.0054        14       4      37 ..     182     222 ..     180     223 .. 0.77
   3 !   22.4   0.1   6.1e-08   0.00016       2      38 .]     232     271 ..     231     271 .. 0.88
   4 !   10.2   0.1   0.00043       1.1       3      36 ..     277     309 ..     275     312 .. 0.88
   5 ?    4.2   0.0     0.034        88       3      19 ..     317     334 ..     315     342 .. 0.80
   6 !    6.7   0.0    0.0057        15      23      37 ..     380     394 ..     369     395 .. 0.89
   7 !   25.6   0.5   5.9e-09   1.5e-05       2      38 .]     417     452 ..     416     452 .. 0.91
   8 ?    3.7   0.0     0.049   1.3e+02       1      17 [.     456     474 ..     456     509 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.7
                 SEEEEEEETTSSEEEEEETTS CS
        WD40  12 svtslafspdgawlasGsdDg 32 
                 s++s++ +p  + ++ G+ D+
  CCD24911.1 148 SISSVKLHPRLPIIFIGT-DH 167
                 588888888888888887.65 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0054
                 EEEEESS.SSEEEEE.....EETTSSEEE.EEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtsla.....fspdgawla.sGsdDgtvriW 37 
                 l ++ +H +++ts++      +++g+ ++ + s+D +++++
  CCD24911.1 182 LSSIQAHfKGITSIDsillkSDKEGSAIIsTTSKDLSIKLY 222
                 678899*999****88888866666667625599*999998 PP

  == domain 3  score: 22.4 bits;  conditional E-value: 6.1e-08
                 EEEEEEESSSSEEEEE...EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGHssvtsla...fspdgawlasGsdDgtvriWd 38 
                 q++r+l  H ++ s+     + +  +las+s+D t++iW+
  CCD24911.1 232 QLQRSLISHEHIVSQNklfIHGNDILLASCSRDTTIKIWN 271
                 7899*****888788777799999999************8 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00043
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 c+ ++ +H ++v+s+  +  + +++sGs D ++r+
  CCD24911.1 277 CINSIPAHlDWVRSI--DVFNEYVLSGSQDSSLRL 309
                 888999**999****..77788899********97 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.034
                 EEEEEESS.SSEEEEEEE CS
        WD40   3 clrtltGH.ssvtslafs 19 
                  l + +GH +++ +++f 
  CCD24911.1 317 GLSIGKGHdFPIECVKFI 334
                 567789**888****765 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.0057
                 SEEEEEETTSEEEEE CS
        WD40  23 awlasGsdDgtvriW 37 
                 ++ as+s+D+ ++iW
  CCD24911.1 380 KYCASASRDKLIKIW 394
                 567899********* PP

  == domain 7  score: 25.6 bits;  conditional E-value: 5.9e-09
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +c+ tl+GH s+v +l  +  g++l+s+sdD+t++ W+
  CCD24911.1 417 KCVMTLKGHsSWVKDL--QIRGNYLFSCSDDKTIKCWS 452
                 8********777*999..77999999***********5 PP

  == domain 8  score: 3.7 bits;  conditional E-value: 0.049
                 TEEEEEEE.SS.SSEEEEE CS
        WD40   1 gqclrtlt.GH.ssvtsla 17 
                 g+c++t+   H +++t+l 
  CCD24911.1 456 GECVKTWNdSHsGFITCLE 474
                 68999985499666***94 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   4.8e-05      0.12     229     256 ..     254     281 ..     196     316 .. 0.80
   2 ?   -2.0   0.0      0.41     1e+03     231     252 ..     380     401 ..     371     405 .. 0.82
   3 !   12.1   0.1   2.1e-05     0.055     230     258 ..     436     465 ..     421     492 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.8e-05
                 TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclati 256
                 ++ +l++ srd ++++Wn++t+ c+ +i
  CCD24911.1 254 NDILLASCSRDTTIKIWNTSTAYCINSI 281
                 344566788***************9986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.41
                 TEEEEEETT-EEEEEETTTTEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkc 252
                 +y +++srd+ +++W + t + 
  CCD24911.1 380 KYCASASRDKLIKIWEIPTPRF 401
                 577899*********9988665 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 2.1e-05
                 TTEEEEEETT-EEEEEETTTTEEEEE.EE- CS
      Nup160 230 qtylfalsrdgkLrvWnlltgkclat.idl 258
                  +ylf+ s d++++ W+l++g c+ t  d 
  CCD24911.1 436 GNYLFSCSDDKTIKCWSLENGECVKTwNDS 465
                 59***********************96665 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.8   1.2e+04      38      67 ..     146     175 ..     143     193 .. 0.75
   2 !    5.7   0.0    0.0072        18      43      81 ..     248     286 ..     231     296 .. 0.87
   3 !    9.1   0.1   0.00061       1.6      47      88 ..     433     474 ..     415     494 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.8
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrllda 67 
                  d +++s++ +p   ++ ++++ g++  +d+
   CCD24911.1 146 DTSISSVKLHPRLPIIFIGTDHGKLYAFDI 175
                  567777788888888888888888776665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0072
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +L  + ++ lLa    d+++++ + +++ +++s++++ +
   CCD24911.1 248 KLFIHGNDILLASCSRDTTIKIWNTSTAYCINSIPAHLD 286
                  566688999************************999865 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00061
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  +  g+ L    +d +++  + e+g++v++++ +++  +tcl+
   CCD24911.1 433 QIRGNYLFSCSDDKTIKCWSLENGECVKTWNDSHSGFITCLE 474
                  456899999999******************9999999**997 PP

>> AKNA  AT-hook-containing transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.4e-06     0.021      35      88 ..      81     137 ..      78     143 .. 0.83
   2 ?   -3.7   0.0         7   1.8e+04      27      44 ..     481     496 ..     468     499 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.4e-06
        AKNA  35 pgkfdpsreleaeIyqlgqrleeLkdqtdqlkqkveefskdiaqds...psplqdar 88 
                 p+k ++   l   I+ l+q +  L +q+d l+q+ ++   + + ds    +++ +++
  CCD24911.1  81 PRKWNSIVRLQRHIMTLEQTCRDLTNQVDTLQQEAKKHDNTNTIDSeslNISWIPKT 137
                 566777778999**************************9999999966655555555 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 7
        AKNA  27 klssskgqpgkfdpsrel 44 
                  l+ +  +++k +  re+
  CCD24911.1 481 ALKET--TENKVNLHREI 496
                 44444..56666666655 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   2.3e-05      0.06      20      54 ..      89     123 ..      84     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
     DUF2205  20 rLqqqakeLqssLqaLaervdeVkeehdKLesenr 54 
                 rLq+++ +L ++ ++L ++vd  ++e +K ++ n 
  CCD24911.1  89 RLQRHIMTLEQTCRDLTNQVDTLQQEAKKHDNTNT 123
                 89***************************999996 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2     0.086   2.2e+02      94     108 ..     160     174 ..     142     285 .. 0.63
   2 ?    0.5   0.0      0.12   3.1e+02       5      51 ..     290     334 ..     286     337 .. 0.80
   3 ?    9.9   0.1   0.00017      0.43     112     197 ..     417     504 ..     413     511 .] 0.70

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.086
   WD40_like  94 klliGtnkGsiyvfs 108
                  + iGt++G++y f+
  CCD24911.1 160 IIFIGTDHGKLYAFD 174
                 478999999999863 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.12
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkll 51 
                 sid+   ++++l G++d  +++ + +s++  si ++ +  +  vk++
  CCD24911.1 290 SIDV--FNEYVLSGSQDSSLRLTHWPSGNGLSIGKGHDFPIECVKFI 334
                 7888..566******************99999987776666666665 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00017
   WD40_like 112 qleevllgqsseIkeikiennkiysLsesafivfdlfsqnieyk.isvkdiktfeii.enkdilligtegeililkknvilqkidveg 197
                 +++++l g+ss +k+++i  n+++s s+++ i+     ++  +k  +      + ++  ++di ++ + +e ++  + +i+    +++
  CCD24911.1 417 KCVMTLKGHSSWVKDLQIRGNYLFSCSDDKTIKCWSLENGECVKtWNDSHSGFITCLeMDSDITALKETTENKVNLHREIMVTAGLDS 504
                 688999*************************987444433332202323333445554478888888888888887777777666666 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00026      0.67      23      38 ..     160     175 ..     141     177 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00026
       PQQ_3  23 lvyvgtgdGtlyAlDa 38 
                 ++++gt+ G+lyA+D 
  CCD24911.1 160 IIFIGTDHGKLYAFDI 175
                 59*************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       905  (0.0504769); expected 358.6 (0.02)
Passed bias filter:                      685  (0.0382063); expected 358.6 (0.02)
Passed Vit filter:                        92  (0.00513135); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3819.27
//
Query:       CCD24912.1  [L=711]
Description: hypothetical protein NDAI_0E00960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-46  159.3   0.2      7e-43  146.9   0.0    2.5  2  Pkinase       Protein kinase domain
    1.8e-18   66.8   0.0    6.5e-18   64.9   0.0    1.8  2  Pkinase_Tyr   Protein tyrosine kinase
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.026   13.8   0.0    1.4  1  Kinase-like   Kinase-like
      0.035   14.0   0.0      0.069   13.1   0.0    1.4  1  APH           Phosphotransferase enzyme family
          4    5.6  12.3      0.021   13.1   2.9    1.9  2  CDC45         CDC45-like protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.0   1.9e-46     7e-43       4     205 ..     213     424 ..     211     470 .. 0.87
   2 !    9.9   0.1   0.00012      0.44     233     264 .]     623     674 ..     557     674 .. 0.71

  Alignments for each domain:
  == domain 1  score: 146.9 bits;  conditional E-value: 1.9e-46
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke...kkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladllerkgslse 97 
                  + lG G+ G+V   v+ ++g ++AvK+++ +k +++ +   kk ++E  i  +l+hpniv+ +++f++  +++++ v++y++ + ++ ++   g++s 
  CCD24912.1 213 GKLLGAGAGGSVKILVRPTDGVTFAVKEFRPRKPNESVKeyaKKCTAEFCIGSTLHHPNIVETVDIFSDskQNKYFEVMQYCPVD-FFAVVM-TGKMSR 309
                 578***************************9998887777899*************************975556667******88.666664.599*** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHH.TTSCB.SHHHHHHHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvl.keney.skkvDvWslGvilye 189
                  e++  +kq+leg++ylHs+g+ HrDlK +N  + e+g lK++DFG a  ++   +     ++ +vg+  YlAPEv+ ++++y  + vD+Ws+G+i  +
  CCD24912.1 310 GEINCCLKQLLEGVKYLHSMGLAHRDLKLDNCVMTEDGILKLIDFGSAVVFRYPFEneismAHGIVGSDPYLAPEVItSTKRYdPQCVDIWSVGIIYCC 408
                 **************************************************99988788999999*************88899955679*********** PP

                 HHHSS-STTTSSHHHH CS
     Pkinase 190 lltgkppfsgekgkek 205
                 ++ ++ p+++ +++++
  CCD24912.1 409 MMLKRFPWKAPRDTDE 424
                 *********7666553 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00012
                 S....................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 233 i....................seeakdllkkllkkdpkkRltaeellqhpyl 264
                                      ++  + +++++l+++p+kR t e++ +++++
  CCD24912.1 623 HgphphhkktihgpyrllrllPHASRPIMSRILEVNPEKRATLEDIFNDEWF 674
                 022222234457777778888889999************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   1.8e-21   6.5e-18       3     198 ..     212     409 ..     211     449 .. 0.82
   2 ?   -1.8   0.0      0.43   1.6e+03     235     256 ..     648     669 ..     633     671 .. 0.86

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.8e-21
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH....HHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee....keelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrk 94 
                  lgk lG+Ga G+V          ++ v+ avK ++ ++ +e+     ++ + e  i ++l+hpniv+ + + +  k+++++ v++y++   +   ++ 
   CCD24912.1 212 LGKLLGAGAGGSVKILVRP----TDGVTFAVKEFRPRKPNESvkeyAKKCTAEFCIGSTLHHPNIVETVDIFSdsKQNKYFEVMQYCPVDFFAVVMTG 305
                  6789999999999766555....8899******976555444222367778899999****************7666668889999998777777766 PP

                  TCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET.TTSSEE.EETTSSTSGGGGS-HHHHHHSE.EEHH.HHH CS
  Pkinase_Tyr  95 kekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi.ekddey.vkkeeaklpvkWmapEslkekk.ftsk.sDv 188
                  k    ++  ++ ++  q+ +G++yL+s+ l Hrdl   N++++e+ + k+ DfG a    +  ++  +++++   +  ++apE+++++k +  +  D+
   CCD24912.1 306 K----MSRGEINCCLKQLLEGVKYLHSMGLAHRDLKLDNCVMTEDGILKLIDFGSAVVFrYPFENEiSMAHGIVGSDPYLAPEVITSTKrYDPQcVDI 399
                  5....999999*******************************************888775444544266666777889*******98876765527** PP

                  HHHHHHHHHH CS
  Pkinase_Tyr 189 WsfGvllwEi 198
                  Ws G++   +
   CCD24912.1 400 WSVGIIYCCM 409
                  ****986544 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.43
                  HHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 235 yelmkkcweedpeeRptfselv 256
                    +m++ +e +pe+R+t++++ 
   CCD24912.1 648 RPIMSRILEVNPEKRATLEDIF 669
                  5699**************9986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   7.4e-06     0.026     152     244 ..     318     410 ..     286     430 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 7.4e-06
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldekgglmlggftaLv..ragtkvvlseve.....kgfaPpEllgsrggytrknktkmthkldaWqlGlviyr 242
                  ql+  + +L++ gl h +++ dn ++ e+g l+l +f++ v  r+  +  +s+         +  pE++ s ++y +         +d W +G+    
   CCD24912.1 318 QLLEGVKYLHSMGLAHRDLKLDNCVMTEDGILKLIDFGSAVvfRYPFENEISMAHgivgsDPYLAPEVITSTKRYDP-------QCVDIWSVGIIYCC 408
                  5667799******************************9865126666666666558855556666999999999988.......56899999986555 PP

  Kinase-like 243 iw 244
                  + 
   CCD24912.1 409 MM 410
                  54 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.9e-05     0.069     156     197 ..     315     358 ..     291     360 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
                 HHHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 156 laallpg....elptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 +++ l+       +++l H+Dl+++N +++  ++ +  +iDf+ a+
  CCD24912.1 315 CLKQLLEgvkyLHSMGLAHRDLKLDNCVMT--EDGILKLIDFGSAV 358
                 444444447778899***************..455558****9986 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   2.0       0.8   2.9e+03     116     132 ..      49      65 ..      12     146 .. 0.44
   2 ?   13.1   2.9   5.9e-06     0.021      85     196 ..     332     542 ..     332     635 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.8
       CDC45 116 leeereayealeeeees 132
                 l+++ +++ +  + + s
  CCD24912.1  49 LKRSSKSFLNFISRKPS 65 
                 11111111111111111 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 5.9e-06
       CDC45  85 shRPwnleNlfgss.............................................................................eekerivv 106
                 +hR ++l+N++ ++                                                                             +e+ r  +
  CCD24912.1 332 AHRDLKLDNCVMTEdgilklidfgsavvfrypfeneismahgivgsdpylapevitstkrydpqcvdiwsvgiiyccmmlkrfpwkaprdtDENFRLYC 430
                 588888888887778888888888888888888888888888888888888888888888888888888888888888888888888888888999*** PP

       CDC45 107 fDDgdieeeleeereayealeeeeesdeede.....eeeeeddddeeeeeee.eedeedeeedeeeskkkrksksdeeee......sddddersrkrrr 193
                 ++D die++  ++ +  e+l +e + ++++        ee++++++ + +++ + + + +++d++++++   +k++++ee      +++ +e++ ++  
  CCD24912.1 431 LED-DIEHDYVQSAKHHEQLLKERKTRRQRMhdgthV-EEKEEQQQTDGHQNaSGSPDCKTNDGQQQTET-TAKDNAQEEipsktiKAKLEEEKGQK-- 524
                 *99.668888888888999999888873333444321.22222211111111011222222222222211.12222222245433322222222222.. PP

       CDC45 194 se................p 196
                  e                p
  CCD24912.1 525 -EaphsplqprqeqspppP 542
                 .122344444444445550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1418  (0.0790897); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.91u 0.31s 00:00:01.22 Elapsed: 00:00:00.47
# Mc/sec: 4594.38
//
Query:       CCD24913.1  [L=417]
Description: hypothetical protein NDAI_0E00970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3231.54
//
Query:       CCD24914.1  [L=108]
Description: hypothetical protein NDAI_0E00980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-26   92.5  11.3    1.6e-26   92.5  10.6    1.4  1  TBCA           Tubulin binding cofactor A
  ------ inclusion threshold ------
      0.017   16.0   1.1      0.026   15.4   1.1    1.3  1  Cytochrom_C_2  Cytochrome C'
      0.022   14.3   2.8       0.03   13.9   2.8    1.3  1  Fzo_mitofusin  fzo-like conserved region
      0.046   13.7   2.6      0.063   13.3   2.6    1.3  1  DUF1910        Domain of unknown function (DUF1910)
       0.17   10.4   8.1       0.19   10.3   8.1    1.0  1  FapA           Flagellar Assembly Protein A
       0.29   10.0  11.5       0.64    8.8  11.5    1.5  1  Spc7           Spc7 kinetochore protein
        1.4    9.9   8.0       0.79   10.7   3.7    2.0  2  PdaC           Deacetylase PdaC


Domain annotation for each model (and alignments):
>> TBCA  Tubulin binding cofactor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5  10.6   6.1e-30   1.6e-26       1      86 [.       6      91 ..       6      95 .. 0.96

  Alignments for each domain:
  == domain 1  score: 92.5 bits;  conditional E-value: 6.1e-30
        TBCA  1 LkIktgvvkRlvKEeasYekEleeqearleklkadgdedeydlkkqeevleetkamipdlkkrlekavekLeelleeeeeleetee 86
                L+Ikt++++Rl+KEe++Y++E++eq+a++eklk+d++ d+ydlkkq evle+t++++p+l++++e++ e+Le++l++++++e+ +e
  CCD24914.1  6 LEIKTKALQRLIKEESYYKEEIKEQKANVEKLKQDSNVDPYDLKKQVEVLEDTERLLPTLYTKIEEFKENLEQFLQSYDGQEDLTE 91
                89****************************************************************************88877776 PP

>> Cytochrom_C_2  Cytochrome C'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   1.1     1e-05     0.026      14     101 ..       7      95 ..       2     107 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1e-05
                    HHHHHHHHHHHTTSST--HHHHHHHHHHHHHHHCSGG.GGC-TTGSS...SSS--B-THHHHTHHHHHHHHHHHHHHHHHHHHHHHCTSHHH CS
  Cytochrom_C_2  14 gknmgklgamlkgeapydaeavaaaaealaalakklp.alFpegsdk...gektkakpeiWedkekfkakaaaleeaaaeLaaaakagdlaa 101
                    + ++++l+  +k+e  y +e+++++ +++++l ++   + +  +++    ++  + +p ++++ e+fk++ +++ ++ +  ++ +++  +aa
     CCD24914.1   7 EIKTKALQRLIKEES-YYKEEIKEQKANVEKLKQDSNvDPYDLKKQVevlEDTERLLPTLYTKIEEFKENLEQFLQSYDGQEDLTES--KAA 95 
                    557889999999888.6689999999999999999888999888888889778999******************9998643333333..223 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.8   1.2e-05      0.03     103     159 ..      27      83 ..       4      84 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
  Fzo_mitofusin 103 farlcqqvdetekeleeeikelekeiekleevqkkakllrnkaslleseLekfeeqy 159
                    +++ +++v++ +++ + +  +l+k++e le++++ + +l  k ++++++Le+f ++y
     CCD24914.1  27 IKEQKANVEKLKQDSNVDPYDLKKQVEVLEDTERLLPTLYTKIEEFKENLEQFLQSY 83 
                    4566788999999999999**********************************9998 PP

>> DUF1910  Domain of unknown function (DUF1910)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.6   2.5e-05     0.063       4      75 ..      17      96 ..      14     104 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.5e-05
     DUF1910  4 llseeyykesiefdkeriaklkekieelsedeeksiqae............ikilklsifkykleliiakYSlGesieeleady 75
                +++e+yyke+i+++k++++klk+  + +  d +k    +               +k + fk++le+ ++ Y + e++ e +a +
  CCD24914.1 17 IKEESYYKEEIKEQKANVEKLKQDSNVDPYDLKK----QvevledterllpTLYTKIEEFKENLEQFLQSYDGQEDLTESKAAV 96
                67889*************9999666655555555....2234577788877788899999999999999997766666665555 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   8.1   7.4e-05      0.19     336     421 ..       7      93 ..       2     108 .] 0.59

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.4e-05
        FapA 336 keklkeleeeleel...eeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkelkeeleskkeeakikvnk 421
                   k+k+l+++++e    +ee+++ k++++kl++   ++  + + k+q++ l+ t   l + ++++ee +++l++ l+s+ +++ +  +k
  CCD24914.1   7 EIKTKALQRLIKEEsyyKEEIKEQKANVEKLKQ--DSNVDPYDLKKQVEVLEDTERLLPTLYTKIEEFKENLEQFLQSYDGQEDLTESK 93 
                 445555666666653336666666666666665..233345566777777777777777888888888888888888884444433333 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  11.5   0.00025      0.64     158     261 ..       6     107 ..       2     108 .] 0.72

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00025
        Spc7 158 LekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaerv 256
                 Le + + l++l +e + +k+e++e+ ++ ++ +++ +++d+ +L++  e l++ +  +  + ++++e +e+le+  ++  + +e  +e +++++ea+ +
  CCD24914.1   6 LEIKTKALQRLIKEESYYKEEIKEQKANVEKLKQD-SNVDPYDLKKQVEVLEDTERLLPTLYTKIEEFKENLEQFLQSY-DGQEDLTESKAAVEEANAF 102
                 44444555555555555555555555555554444.5699999999999999999999999999999999999998888.7889999999999999998 PP

        Spc7 257 leeck 261
                 +++ k
  CCD24914.1 103 IQASK 107
                 88776 PP

>> PdaC  Deacetylase PdaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.7   0.00031      0.79      23      78 ..      11      62 ..       2      73 .. 0.66
   2 ?    2.3   0.3      0.14   3.5e+02      32      55 ..      71      94 ..      63     107 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00031
                HHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHTT---S-EEEEEEEEEEEE-SSEE CS
        PdaC 23 kevqdkinkkiekdadkflkeyekeake.eakkndfpkrpyelevdyevkynsekil 78
                k++q+ i+++  +++++ +ke ++   + e+ k+d ++ py+l+ ++ev  ++e++l
  CCD24914.1 11 KALQRLIKEE--SYYKEEIKEQKA---NvEKLKQDSNVDPYDLKKQVEVLEDTERLL 62
                4444444333..555555555533...25888888889***************9987 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.14
                HHHHHHHHHHHHHHHHHH.HHHHT CS
        PdaC 32 kiekdadkflkeyekeakeeakkn 55
                ++++++++fl++y  +++ +++k+
  CCD24914.1 71 EFKENLEQFLQSYDGQEDLTESKA 94
                347778888888755554333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1898  (0.105862); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 782.37
//
Query:       CCD24915.1  [L=503]
Description: hypothetical protein NDAI_0E00990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3718.21
//
Query:       CCD24916.1  [L=347]
Description: hypothetical protein NDAI_0E01000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-81  274.1   0.1    1.5e-81  273.7   0.1    1.1  1  ATP_bind_1    Conserved hypothetical ATP binding protein
     0.0012   19.4   0.1       0.32   11.5   0.0    2.7  2  AAA_18        AAA domain
  ------ inclusion threshold ------
      0.089   11.8   0.2       0.18   10.7   0.0    1.5  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
       0.11   12.8   0.1       0.32   11.3   0.0    2.0  2  AAA_22        AAA domain
       0.11   12.9   0.0       0.31   11.4   0.0    1.9  1  RNA_helicase  RNA helicase
       0.12   12.8   3.1        0.3   11.5   0.1    2.4  2  AAA_17        AAA domain
       0.15   12.1   3.4       0.51   10.4   3.4    2.0  1  HUN           HPC2 and ubinuclein domain


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.7   0.1     6e-85   1.5e-81       1     240 [.       7     260 ..       7     261 .. 0.96

  Alignments for each domain:
  == domain 1  score: 273.7 bits;  conditional E-value: 6e-85
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmedlglgpngalvvaleflresldwl...deelekeeddyllf 96 
                 v+Gp+GsGK+t+++ +s++++++gr+ +++N+DPA+++lpY++avdir++it+e+vm++++lgpng+l++a+e l +s+d +    ++l +ee++yl+f
  CCD24916.1   7 VIGPPGSGKSTYCNGCSQFFNAIGRHGQIINMDPANDSLPYPCAVDIRDFITVEEVMQEQQLGPNGGLMYAVESLDKSIDLFilqIKSLIQEEKAYLVF 105
                 89******************************************************************************99666455556678***** PP

  ATP_bind_1  97 DtPGQielfthseslakiveeLes..efalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkek..lekeleffedvealsllle 191
                 D+PGQ+elfth++s  ki+++Le+  +++++vv+L+D+ ++t+p++++s ll+al+ ml+++lP+++v++k+D+lk++  l ++l+++++v++l++ll 
  CCD24916.1 106 DCPGQVELFTHHSSYFKIFKKLEKqlSMRFCVVNLIDCYYITSPSQYVSILLLALRSMLMMDLPQINVFSKIDMLKSYgeLPFRLDYYTEVQDLDYLLP 204
                 ***********************99***************************************************99*9*****************99 PP

  ATP_bind_1 192 kee........ekykklaeaiaelleefalvlrflplssekeesiedllslidealq 240
                   e        +ky+kl+e+i+el+++f+lv +f +l+ ++++s+ +l + id+a+ 
  CCD24916.1 205 YIEkesssvlsKKYSKLTETISELVSDFNLV-SFEVLAIDDKQSMINLQASIDKANG 260
                 988899*************************.*********************9986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00013      0.32       2      17 ..       6      21 ..       6     112 .. 0.84
   2 ?    5.2   0.1     0.012        30       3      69 ..     262     339 ..     261     346 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
      AAA_18  2 lltGtpGvGKttlake 17
                ++ G+pG+GK+t ++ 
  CCD24916.1  6 IVIGPPGSGKSTYCNG 21
                699*********9986 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.012
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe..............aldeskrldedkldklldaleenss 69 
                 + G++ vG  t+  e  +++     l+ +  ++++ +  +++                 + k++d d++d++ +al+ + +
  CCD24916.1 262 IFGASEVGGDTVWAEATREG---AMLMNYDIQDRWIDNKEQYdkeeqerqeqiereRQMQDKEIDVDNDDEWESALKDWEE 339
                 67888888888888887773...4444444444444433333222222333333366667777777777777777777754 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.1e-05      0.18      34      69 ..       7      42 ..       4      45 .. 0.93
   2 ?   -3.2   0.2       1.3   3.2e+03     179     247 ..     302     312 ..     269     336 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.1e-05
                EEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE---- CS
        MeaB 34 ltGvPGaGkstlvealglelrrrGkrvavlavDPss 69
                + G PG+Gkst  +   + + + G++  ++ +DP+ 
  CCD24916.1  7 VIGPPGSGKSTYCNGCSQFFNAIGRHGQIINMDPAN 42
                5699******************************85 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCCCTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH CS
        MeaB 179 kkeaekaarelraaleleeekekeWrpkvlktsavegeGidelvdaieehrevlkktGllekrrrerak 247
                 k+e e+ ++                                                           +
  CCD24916.1 302 KEEQERQEQ----------------------------------------------------------IE 312
                 222222211..........................................................11 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012      0.32       9      29 ..       6      26 ..       4     142 .. 0.82
   2 ?   -2.8   0.0       2.8   7.2e+03      91     103 ..     234     248 ..     199     256 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00012
      AAA_22  9 vvtGesGtGKTtllrrlleql 29
                +v+G++G+GK+t ++   + +
  CCD24916.1  6 IVIGPPGSGKSTYCNGCSQFF 26
                79**********998666655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.8
      AAA_22  91 v..ielliiDEaqhl 103
                     e+l iD+ q +
  CCD24916.1 234 LvsFEVLAIDDKQSM 248
                 244467888887775 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012      0.31       3      28 ..       7      31 ..       5      67 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
  RNA_helicase  3 lyGpsgeGKStlakeLakallkklkl 28
                  + Gp+g GKSt+++  ++++ ++++ 
    CCD24916.1  7 VIGPPGSGKSTYCNG-CSQFFNAIGR 31
                  78************9.8888877733 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00012       0.3       1      14 [.       8      21 ..       8      28 .. 0.85
   2 ?    1.0   0.6      0.21   5.4e+02      27      68 ..     270     314 ..     267     343 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
                EE-TTSSHHHHHHH CS
      AAA_17  1 lGgPGsGKgtqcek 14
                +G+PGsGK+t+c+ 
  CCD24916.1  8 IGPPGSGKSTYCNG 21
                69**********85 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.21
                 HHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHH...HHHHHHHHHH CS
      AAA_17  27 Gdllreeakrgglakardemrklpleekkelq...keaaekiaee 68 
                 Gd + +ea+r+g+   + ++++  ++ k++++   +e +e+i++e
  CCD24916.1 270 GDTVWAEATREGAMLMNYDIQDRWIDNKEQYDkeeQERQEQIERE 314
                 777777777777533333344322222222220002222233333 PP

>> HUN  HPC2 and ubinuclein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.4    0.0002      0.51      14      35 ..     285     306 ..     279     346 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0002
         HUN  14 sgYDieDpFIDDsElydelvpd 35 
                 ++YDi+D  ID+ E yd  + +
  CCD24916.1 285 MNYDIQDRWIDNKEQYDKEEQE 306
                 89************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1433  (0.0799264); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.55
# Mc/sec: 1904.61
//
Query:       CCD24917.1  [L=573]
Description: hypothetical protein NDAI_0E01010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-05   22.4   0.7    0.00015   20.8   0.7    1.8  1  Fucokinase      L-fucokinase
    0.00072   19.2   1.5      0.012   15.4   1.4    2.6  1  Hexapep         Bacterial transferase hexapeptide (six repeat
    0.00088   19.7   0.0     0.0014   19.0   0.0    1.3  1  NTP_transf_3    MobA-like NTP transferase domain
     0.0032   15.7   0.3     0.0032   15.7   0.3    1.5  2  DUF4954         Domain of unknown function (DUF4954)
  ------ inclusion threshold ------
      0.083   12.7   3.5        4.3    7.2   1.9    2.7  2  Hexapep_2       Hexapeptide repeat of succinyl-transferase


Domain annotation for each model (and alignments):
>> Fucokinase  L-fucokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.7   4.3e-08   0.00015     261     318 ..     429     497 ..     387     515 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 4.3e-08
  Fucokinase 261 saiknkkekk...........kesavvinSvlessvsvgegsviehsslkgnvsigsnsivsgleless 318
                 ++ik+k+++             +++ ++ S+l ++v+++++ ++e++ +++nv+ig++  +s++++e +
  CCD24917.1 429 CKIKDKSSSVklstmsyegiiGAKCRIAGSILFHGVQLDDDVILENCIIGPNVKIGKKAKLSNCYVEGN 497
                 33333333336777777788899******************************************9865 PP

>> Hexapep  Bacterial transferase hexapeptide (six repeats)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   1.4   3.2e-06     0.012       4      30 ..     449     485 ..     447     496 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.2e-06
                 EETTEEE-T...........TEEEETTEEE-TTEEEET CS
     Hexapep   4 IGsnvlIgp...........faviggnVkIGdnvkIga 30 
                 IG ++ I              +++ +n++IG+nvkIg 
  CCD24917.1 449 IGAKCRIAGsilfhgvqlddDVIL-ENCIIGPNVKIGK 485
                 566666666666663333322222.5555555555543 PP

>> NTP_transf_3  MobA-like NTP transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.8e-07    0.0014      15      52 ..      66     103 ..      60     176 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.8e-07
                   THHHHCCCCCCHHHHHHHHHCTT.-CEEEEECSHCHHH CS
  NTP_transf_3  15 dKallplggkpllervldalraagvdevvvvggdeevl 52 
                   +Kallp++++p++e+vld   +a+++e+ +v+  ee+ 
    CCD24917.1  66 PKALLPIANRPMIEYVLDWCDQANFAEINIVASVEELP 103
                   8******************************9988764 PP

>> DUF4954  Domain of unknown function (DUF4954)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2      0.47   1.7e+03     528     572 ..     209     251 ..     207     274 .. 0.82
   2 !   15.7   0.3     9e-07    0.0032     194     269 ..     426     498 ..     408     514 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.47
     DUF4954 528 kiksleeieerleelhenYyelewswavellkklyeiklekitae 572
                 +i++ +++++  +++++ Y e e s    +l ++y+ +   +t++
  CCD24917.1 209 TINDKKQLNKFQKKFFTIYSENENSEKQPILLDIYSKDD--VTRS 251
                 688899999999999999999999999999999998765..5554 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 9e-07
     DUF4954 194 gdyatiegasklengtinSskeapveiGegViledfiissGskikdgavisrcfvGqavklkkqfsaedsllfaNc 269
                 ++ ++i+  s+   +   S+ +    iG    +  +i+ +G ++ d +++++c++G +vk++k+++++++ +  N 
  CCD24917.1 426 DPSCKIKDKSSSVKL---STMSYEGIIGAKCRIAGSILFHGVQLDDDVILENCIIGPNVKIGKKAKLSNCYVEGNY 498
                 444444444333333...444445679******************************************9987775 PP

>> Hexapep_2  Hexapeptide repeat of succinyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   1.9    0.0012       4.3       3      28 ..     448     474 ..     448     485 .. 0.66
   2 ?    6.2   1.3    0.0025       8.8       6      17 ..     473     484 ..     471     502 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0012
                 EE-TT-EE-TT-EE..SEEE-TT-EE-T CS
   Hexapep_2   3 iIGdnCliGanagi..GvslGdncvvga 28 
                 iIG+ C i a ++   Gv+l d++++++
  CCD24917.1 448 IIGAKCRI-AGSILfhGVQLDDDVILEN 474
                 56666666.6666467888888777765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0025
                 TT-EE-TT-EES CS
   Hexapep_2   6 dnCliGanagiG 17 
                 +nC+iG+n  iG
  CCD24917.1 473 ENCIIGPNVKIG 484
                 688888886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1246  (0.0694963); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 3818.58
//
Query:       CCD24918.1  [L=443]
Description: hypothetical protein NDAI_0E01020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-42  145.2   0.0      3e-42  144.2   0.0    1.5  1  AAA             ATPase family associated with various cellula
      2e-08   34.0   0.3    4.8e-08   32.8   0.3    1.6  1  Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
    7.2e-08   32.1   0.2    2.6e-07   30.3   0.1    2.0  2  AAA_lid_3       AAA+ lid domain
    6.7e-07   29.8   2.9    7.6e-05   23.2   0.0    3.2  3  AAA_16          AAA ATPase domain
    6.4e-06   26.2   3.5    4.3e-05   23.5   0.2    3.1  2  AAA_5           AAA domain (dynein-related subfamily)
    3.2e-05   24.1   0.0    8.6e-05   22.7   0.0    1.8  1  AAA_2           AAA domain (Cdc48 subfamily)
    6.8e-05   22.7   0.0    0.00014   21.6   0.0    1.5  1  RuvB_N          Holliday junction DNA helicase RuvB P-loop do
    0.00018   21.5   0.0    0.00033   20.6   0.0    1.4  1  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
     0.0018   18.6   0.2      0.032   14.5   0.1    2.4  2  AAA_22          AAA domain
     0.0023   18.3   0.0     0.0051   17.2   0.0    1.6  1  RNA_helicase    RNA helicase
     0.0025   17.1   0.1     0.0049   16.1   0.1    1.4  1  TIP49           TIP49 P-loop domain
     0.0065   15.9   0.1      0.013   14.9   0.1    1.4  1  Mg_chelatase    Magnesium chelatase, subunit ChlI
     0.0068   17.0   0.2      0.034   14.7   0.0    2.3  2  AAA_18          AAA domain
      0.008   16.4   0.0      0.024   14.8   0.0    1.8  1  AAA_33          AAA domain
  ------ inclusion threshold ------
      0.012   15.4   0.0       0.03   14.1   0.0    1.6  1  IstB_IS21       IstB-like ATP binding protein
      0.014   15.6   3.1      0.032   14.4   3.1    1.6  1  Fib_alpha       Fibrinogen alpha/beta chain family
      0.014   15.1   0.0      0.039   13.7   0.0    1.8  1  AAA_24          AAA domain
      0.026   14.8   0.3      0.068   13.4   0.0    1.9  2  AAA_28          AAA domain
       0.03   14.0   0.1      0.099   12.3   0.0    1.8  2  Prot_ATP_OB_N   Proteasomal ATPase OB N-terminal domain
      0.043   13.9   0.0       0.15   12.1   0.0    1.9  2  AAA_14          AAA domain
      0.051   13.1   0.0       0.13   11.8   0.0    1.7  1  AAA_7           P-loop containing dynein motor region
      0.059   12.8   0.2       0.12   11.8   0.2    1.4  1  PhoH            PhoH-like protein
      0.063   12.8   0.1       0.19   11.3   0.1    1.8  1  AAA_25          AAA domain
      0.067   12.5   1.6       0.11   11.8   0.0    2.2  3  ATPase          KaiC
      0.071   12.2   0.1       0.16   11.0   0.1    1.5  1  Parvo_NS1       Parvovirus non-structural protein NS1
        0.1   12.5   0.0       0.24   11.3   0.0    1.6  1  AAA_3           ATPase family associated with various cellula
       0.15   12.0   0.1       0.51   10.2   0.0    1.9  2  NACHT           NACHT domain
       0.15   11.8   7.1       0.95    9.2   0.0    2.3  2  AAA_11          AAA domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.0   4.6e-45     3e-42       1     132 []     224     357 ..     224     357 .. 0.96

  Alignments for each domain:
  == domain 1  score: 144.2 bits;  conditional E-value: 4.6e-45
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr...sgseseeeervvnqLlteldgv 96 
                 vllyGppGtGKTllakava ++g++f+   +s +++ky+ges++ ire+f+ ake++ p+i+f+DE+da++++r    +s+++e +r++ +Llt++dg+
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHE-PCIIFMDEVDAIGGRRfseGTSADREIQRTLMELLTQMDGF 321
                 79******************************************************8.****************986666888889************* PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETTS CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieiel 132
                 ++  +++ +i+atnrpd+ldpallr gR+drkiei+l
  CCD24918.1 322 DNL-GQTKIIMATNRPDTLDPALLRpGRLDRKIEIPL 357
                 **7.55****************************985 PP

>> Prot_ATP_ID_OB  Proteasomal ATPase OB C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.3   7.5e-11   4.8e-08       1      57 []     111     166 ..     111     166 .. 0.95

  Alignments for each domain:
  == domain 1  score: 32.8 bits;  conditional E-value: 7.5e-11
                     EEEEEEE-TTSSEEEEE-TTS-EEEEEE-GGGSSST--TTEEEEEETTTTEEEEEE- CS
  Prot_ATP_ID_OB   1 VatVsEvlddteraiVktssdeevvvslagavpremLrpgDlVavdkdtgfifEkLP 57 
                     +++V + l + e+ iVk ss+  ++v +  +v+r++L+ g +V +d +t  i+ +LP
      CCD24918.1 111 IGEVMKELSE-EKYIVKASSGPRYIVGVRNSVDRKKLKKGVRVTLDITTLTIMRILP 166
                     5778888888.9********************************************9 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       5.2   3.3e+03      28      36 ..     196     204 ..     195     208 .. 0.84
   2 !   30.3   0.1   4.1e-10   2.6e-07       2      43 ..     380     421 ..     379     423 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 5.2
   AAA_lid_3  28 llAlrrgik 36 
                 ++Alr++i+
  CCD24918.1 196 IRALREVIE 204
                 79****987 PP

  == domain 2  score: 30.3 bits;  conditional E-value: 4.1e-10
   AAA_lid_3   2 vdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedf 43 
                 +d+++ +++++G+ GAD+ +   eA++ A+r+++++i  ed+
  CCD24918.1 380 FDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHIIPEDL 421
                 7999999****************************9876776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.8       6.7   4.3e+03      91     127 ..      32      67 ..       5      95 .. 0.53
   2 !   23.2   0.0   1.2e-07   7.6e-05      16      57 ..     213     255 ..     191     271 .. 0.74
   3 ?    5.5   0.0     0.032        20     122     161 ..     268     314 ..     264     324 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 6.7
      AAA_16  91 saeleawrekleealaavpelagaea......srllellkrll 127
                 +a  + ++ + ++a ++vp ++++++      +       ++ 
  CCD24918.1  32 TATSNTDAPQQQAAEEEVPRIDPEQEarnkalT-------QFK 67 
                 233333333333333355555555554432332.......333 PP

  == domain 2  score: 23.2 bits;  conditional E-value: 1.2e-07
      AAA_16  16 lervrsgrpelvllsGesGvGKsslvrellralekdggif..lr 57 
                 ++rv    p  vll+G++G+GK+ l+++++  + ++ +if  ++
  CCD24918.1 213 FQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-FIFspAS 255
                 4455555569********************999988.7774444 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.032
      AAA_16 122 llkrllallsrderplvlvlDdlq........wadeaslqllaaLlrl 161
                  +++++a++++ ++p ++++D+++           +a++++ ++L++l
  CCD24918.1 268 IIREMFAYAKE-HEPCIIFMDEVDaiggrrfsEGTSADREIQRTLMEL 314
                 67888899999.888*********777775553333555555555554 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.5         2   1.3e+03      65      95 ..      46      77 ..       8     149 .. 0.61
   2 !   23.5   0.2   6.7e-08   4.3e-05       1     136 [.     223     345 ..     223     346 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 2
                G-SEEEEESGGG--.HHHHHHHHHHHHSSEEE CS
       AAA_5 65 egeilvlDEverae.sevlnsLlslleerrll 95
                e e+ ++D  ++a+ ++ ++  ++lle+rr++
  CCD24918.1 46 EEEVPRIDPEQEARnKALTQFKNKLLEHRRYD 77
                55566666555555344444456777777776 PP

  == domain 2  score: 23.5 bits;  conditional E-value: 6.7e-08
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-S CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeg 99 
                 +vlL GppGtgK+ la+ +aa +++++         +++ ++ ++   ++ +  ++  ++ +  e++i+++DEv+ +    +++  s   e ++ l+e+
  CCD24918.1 223 GVLLYGPPGTGKTLLAKAVAATIGANFIFS------PASGIVDKYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMEL 314
                 59***********************99865......45557777772.4444445555554445999*******9999999999999999999999999 PP

                 SSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5 100 gelvkaknddllerfrviatanpldrslnelspalrs 136
                  ++++   +  l ++ +i+++n++d     l+pal++
  CCD24918.1 315 LTQMDGFDN--LGQTKIIMATNRPD----TLDPALLR 345
                 999977664..56699999999999....88888865 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.3e-07   8.6e-05       6     104 ..     224     316 ..     219     335 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 1.3e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHHHHHH CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLLqile 104
                 +ll gp g+Gkt+laka+a ++ +    ++i + as +    +     +r i +  +y +  e  i+++DE+d i  ++ s+      ++qr L+ +l 
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVAATIGA----NFIFSPASGIVD--KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 316
                 6899******************96....**********99..33333467777778899999999************7555555556799*99999985 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.2e-07   0.00014      35      94 ..     223     290 ..     214     296 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.2e-07
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkit..sgPvlekagdlaalltnl....eekd..vlfideih 94 
                  vllyGpPG Gkt lak +a+ +g+++  +  sg v +  g+ a ++ ++    +e++  ++f+de+ 
  CCD24918.1 223 GVLLYGPPGTGKTLLAKAVAATIGANFIFSpaSGIVDKYIGESARIIREMfayaKEHEpcIIFMDEVD 290
                 69***********************9865411444444457777777665333223324477777775 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.2e-07   0.00033      20      64 ..     222     266 ..     194     291 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 5.2e-07
                 EEEEEEESTTSSHHHHHHHHHHHTT------TTTTSEEEEEE..S CS
        TsaE  20 dvilLeGdLGaGKTtlvrglakalgveevkSPTFtlveeYeleke 64 
                 + +lL+G+ G+GKT l++++a+++g + + SP   +v +Y  e+ 
  CCD24918.1 222 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESA 266
                 349*************************************76554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1     5e-05     0.032       8      28 ..     224     244 ..     219     256 .. 0.87
   2 ?    1.0   0.0      0.72   4.6e+02      77     115 ..     267     317 ..     252     335 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleq 28 
                 ++++G++GtGKT+l++ ++ +
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVAAT 244
                 689*************99876 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.72
      AAA_22  77 ellealeqalraravielliiDEaqhlr....s.........eealeeLrsl 115
                 ++++ +  +++++    ++  DE++ +     s         ++ l eL + 
  CCD24918.1 267 RIIREMFAYAKEHEP-CIIFMDEVDAIGgrrfSegtsadreiQRTLMELLTQ 317
                 555555666666666.8999*****997655415555665663333333333 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     8e-06    0.0051       1      64 [.     224     278 ..     224     291 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 8e-06
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkde 64 
                   ++lyGp+g+GK++lak +a+++  +        ++  +p++ ++d+Y g+ + +i ++ +  +e
    CCD24918.1 224 VLLYGPPGTGKTLLAKAVAATIGAN-------FIF--SPASGIVDKYIGESARIIREMFAYAKE 278
                   689**************77776622.......233..588888999998888888888887766 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   7.7e-06    0.0049      51      85 ..     222     256 ..     212     272 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.7e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsg 85 
                 ++vLl Gp+gtGkt la a++  +g++  f   sg
  CCD24918.1 222 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 256
                 89***********************9988877655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1     2e-05     0.013      25      44 ..     224     243 ..     216     249 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlps 44 
                   +ll+GppG+GKt+lak++++
    CCD24918.1 224 VLLYGPPGTGKTLLAKAVAA 243
                   89**************9876 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       5.7   3.7e+03      69      69 ..      75      75 ..      34     127 .. 0.60
   2 !   14.7   0.0   5.3e-05     0.034       1      66 [.     224     317 ..     224     341 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 5.7
      AAA_18 69 s 69
                +
  CCD24918.1 75 R 75
                2 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 5.3e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf....................gvnlrdvakenglllevdpe.......aldeskrldedkldklldalee 66 
                 +ll G+pG+GKt lak+++    ++                     ++   +ake+++++ + +e        ++e   +d++ +  l+++l +
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVAATIgANfifspasgivdkyigesariIREMFAYAKEHEPCIIFMDEvdaiggrRFSEGTSADREIQRTLMELLTQ 317
                 799***************9886433577777766666666665555555555666665555555555566666666666666666555555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.7e-05     0.024       2      44 ..     224     279 ..     224     335 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.7e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdt.............lrrrlfgtdqqs 44 
                 vll G+pG+GK+ la+ +++  ga ++ s++             ++r +f+  +++
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVAATIGANFIFSPAsgivdkyigesarIIREMFAYAKEH 279
                 7899***************9999999999988888888888888666666655554 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   4.7e-05      0.03      48      69 ..     222     243 ..     210     253 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.7e-05
   IstB_IS21  48 enivllGpsGvGKshlaialgv 69 
                 ++++l Gp+G+GK+ la a++ 
  CCD24918.1 222 KGVLLYGPPGTGKTLLAKAVAA 243
                 6899***************985 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   3.1     5e-05     0.032      63     123 ..      46     106 ..      14     113 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5e-05
                 HHHHHHHHHHHHH.HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  63 dslrekqkskkdn.dnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeq 123
                 +   ++   +++  ++++++++++l  e+ r+++++++  +nir L +++++ e++i+ L++
  CCD24918.1  46 EEEVPRIDPEQEArNKALTQFKNKLL-EHRRYDDQLKQRRQNIRTLEKLYDKTENDIKALQS 106
                 33333333333334889999999999.9******************************9975 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     6e-05     0.039       5      23 ..     224     246 ..     221     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6e-05
      AAA_24   5 iliyGpsgiGKTtlakel....g 23 
                 +l+yGp+g+GKT lak      g
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVaatiG 246
                 89*************98855544 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2         7   4.5e+03      51      66 ..      62      77 ..      18     105 .. 0.66
   2 ?   13.4   0.0   0.00011     0.068       2      31 ..     224     254 ..     223     290 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 7
      AAA_28 51 dllafaervleeqlee 66
                 l +f+ ++le+++ +
  CCD24918.1 62 ALTQFKNKLLEHRRYD 77
                3444444444444433 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 0.00011
      AAA_28   2 ivitGgestGKTtlleaLaar.gypvvpEaa 31 
                 + + G+++tGKT l++a aa+ g + +  +a
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVAATiGANFIFSPA 254
                 6799***************988666554444 PP

>> Prot_ATP_OB_N  Proteasomal ATPase OB N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00015     0.099      18      46 ..     127     155 ..     111     157 .. 0.88
   2 ?   -2.2   0.0       5.2   3.3e+03      31      41 ..     338     348 ..     336     349 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
  Prot_ATP_OB_N  18 lvggrrmrVavsPlvdaeeLrpGqeVlLn 46 
                     ++g r+ V v  +vd ++L+ G +V L+
     CCD24918.1 127 ASSGPRYIVGVRNSVDRKKLKKGVRVTLD 155
                    689***********************996 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.2
  Prot_ATP_OB_N  31 lvdaeeLrpGq 41 
                    ++d++ LrpG+
     CCD24918.1 338 TLDPALLRPGR 348
                    6899******7 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       5.8   3.7e+03      80      89 ..      87      96 ..      41     125 .. 0.57
   2 ?   12.1   0.0   0.00023      0.15       5      76 ..     224     292 ..     221     322 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 5.8
      AAA_14 80 ekalkslvde 89
                 ++l +l+d+
  CCD24918.1 87 IRTLEKLYDK 96
                2333333333 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00023
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++ G+  +GKT l+k ++ +      ++++       dk + +++++++++++ +ke++  ++f+DE+  +
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVAATIG---ANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAI 292
                 7899**************98888...99**999999999888877666666666555678889******877 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0002      0.13      31      58 ..     219     246 ..     211     293 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkld 58 
                 k  k vll+Gp GtGKt+++k +  ++ 
  CCD24918.1 219 KPPKGVLLYGPPGTGKTLLAKAVAATIG 246
                 55688**************998876655 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00019      0.12      22      42 ..     224     244 ..     216     251 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
                 EEEE--TTSSTTHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalave 42 
                 v   Gp GtGKt+la a+a++
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVAAT 244
                 6789************99986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1    0.0003      0.19      36      57 ..     224     245 ..     218     253 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
      AAA_25  36 allaGapgtGKttlaldlalav 57 
                 +ll+G+pgtGKt la  +a+++
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVAATI 245
                 69*************9988865 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         9   5.8e+03      99     104 ..      99     104 ..      67     126 .. 0.49
   2 ?   11.8   0.0   0.00018      0.11      11      37 ..     212     239 ..     187     248 .. 0.84
   3 ?   -1.8   0.0       2.6   1.6e+03     135     161 ..     302     331 ..     264     336 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 9
      ATPase  99 kdkedl 104
                 +d ++l
  CCD24918.1  99 NDIKAL 104
                 222222 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00018
      ATPase  11 il.kgGipegrvvlitGepGtGKtifal 37 
                 i+   Gi   + vl++G pGtGKt++a+
  CCD24918.1 212 IFqRVGIKPPKGVLLYGPPGTGKTLLAK 239
                 443468999999**************97 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2.6
      ATPase 135 ekeavaReilrqlvrvl...kklgvTailv 161
                 + + ++ ++l++l++++    +lg+T i+ 
  CCD24918.1 302 SADREIQRTLMELLTQMdgfDNLGQTKIIM 331
                 334445555666666663334566777665 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00026      0.16     117     138 ..     224     245 ..     217     248 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00026
   Parvo_NS1 117 vwfyGpantGktnlaeaIakav 138
                 v++yGp+ tGkt la+a a ++
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVAATI 245
                 89***************99876 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00038      0.24       2      27 ..     224     249 ..     223     252 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00038
       AAA_3   2 vllegvPGlaktllvkalakaldlef 27 
                 vll g PG++ktll+ka+a +++++f
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVAATIGANF 249
                 7999******************9987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0008      0.51       3      25 ..     224     246 ..     222     255 .. 0.88
   2 ?   -2.3   0.0       5.6   3.6e+03      83      94 ..     314     325 ..     281     339 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0008
                 EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawa 25 
                 v+l G++G GKT L++ +a ++ 
  CCD24918.1 224 VLLYGPPGTGKTLLAKAVAATIG 246
                 799**************998775 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 5.6
                 EEEEEE-STT-S CS
       NACHT  83 lLlilDglDelv 94 
                 lL  +Dg+D l 
  CCD24918.1 314 LLTQMDGFDNLG 325
                 333355555554 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   6.0      0.32     2e+02     108     179 ..      13      89 ..       1     126 [. 0.49
   2 ?    9.2   0.0    0.0015      0.95      19      35 ..     223     242 ..     198     280 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.32
      AAA_11 108 sleekvekrlekee.....kaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelsk 179
                 s++ + e++++++      +a+ + +  ++++++++  r + e+e+++k +++++++  +++++ ++lk+ r+++++
  CCD24918.1  13 SMDAESEQQQQSNApgsaeTATSNTDAPQQQAAEEEVPRIDPEQEARNKALTQFKNKLLEHRRYDDQLKQRRQNIRT 89 
                 44444444444443554433333333333333333333344444444444444444444445544444444433332 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0015
      AAA_11  19 itliqGPPGtgKT...ktiv 35 
                  +l+ GPPGtgKT   k+++
  CCD24918.1 223 GVLLYGPPGTGKTllaKAVA 242
                 4799*********5544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1434  (0.0799822); expected 358.6 (0.02)
Passed bias filter:                      803  (0.0447878); expected 358.6 (0.02)
Passed Vit filter:                       128  (0.00713927); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 2957.48
//
Query:       CCD24919.1  [L=215]
Description: hypothetical protein NDAI_0E01030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-18   66.7   0.6    1.6e-17   64.0   0.3    2.1  2  HIT        HIT domain
    2.5e-16   60.2   3.0    9.6e-16   58.3   3.0    1.9  1  DcpS_C     Scavenger mRNA decapping enzyme C-term binding
    2.9e-13   50.1   1.1    5.9e-13   49.1   1.1    1.5  1  zf-C2HE    C2HE / C2H2 / C2HC zinc-binding finger
  ------ inclusion threshold ------
      0.058   14.3   1.4      0.058   14.3   1.4    3.1  3  zf-C2H2_4  C2H2-type zinc finger
       0.77   10.1   6.8        1.2    9.5   5.2    2.2  2  zf-C2H2_2  C2H2 type zinc-finger (2 copies)


Domain annotation for each model (and alignments):
>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.3   4.4e-21   1.6e-17       5      98 .]      21     140 ..      17     140 .. 0.89
   2 ?    0.5   0.0      0.28     1e+03      44      75 ..     165     202 ..     143     212 .. 0.72

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 4.4e-21
                 -CCEEEE-SSEEEEE-SS-SSSSEEEEEESS.TGCSGGGCC.......HHHHHHHHHHHHHHHHHHHTCT..................TCCCEEEEEEE CS
         HIT   5 pstvvyeddlvlafldidpkapghlLvipkk.hlselhdlt.......eeelakllsavkkvakalqkkf..................knkglrvvinn 77 
                  +++vy+d++v+++ d++pk+ +hlL++p++ +l+  h++        ++ + +++ a + ++k++  k+                   + ++  +i +
  CCD24919.1  21 SEELVYYDEKVTIINDKFPKSTCHLLILPRDgKLTLQHPTIaltdrikDSLEEYVRMAQEYIFKTFTSKYklvkpipnvfdkiedfndMEIFIDKFITV 119
                 5789***************************888888888789888866666777777777888888888****************998889999**** PP

                 SGGGT-SSSS-EEEEEEC-TT CS
         HIT  78 gahagqsvahlHiHviprreh 98 
                 g h+++s+a+lHiHvi++++h
  CCD24919.1 120 GVHSVPSMANLHIHVITKDFH 140
                 ******************986 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.28
                 C......HHHHHHHHHHHHHHHHHHHTCTTCCCEEEEE CS
         HIT  44 t......eeelakllsavkkvakalqkkfknkglrvvi 75 
                 +       +e+ +l++  + ++ + +++fkn++ ++ +
  CCD24919.1 165 PleqipvRDEMIDLVKHGDLICCYCNANFKNQFAKLKK 202
                 44455567888899999999999999999988877654 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   3.0   2.7e-19   9.6e-16       9     112 ..      17     147 ..       6     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 58.3 bits;  conditional E-value: 2.7e-19
                 TTSS-B-EEEE-SSEEEEE-SS-SSSEEEEEEESS---SGGG....--TTTTTHHHHHHHHHHHHHHHTT-T.......................-EEE CS
      DcpS_C   9 kgkepervvyedekfvvlkDikpkaklhllvipkrdikslrd....Ltkehlpllkemrekakkvieekyne.......................vdae 80 
                 ++ ++e++vy dek+++++D+ pk++ hll++p++   +l++    Lt+   + l+e+++ a++ i + +++                          +
  CCD24919.1  17 QKVPSEELVYYDEKVTIINDKFPKSTCHLLILPRDGKLTLQHptiaLTDRIKDSLEEYVRMAQEYIFKTFTSkyklvkpipnvfdkiedfndmeiFIDK 115
                 33447999***************************55555554667899999999999999999998888778899****************9996777 PP

                 EE--SCCCT--S-S--EEEEE........SS- CS
      DcpS_C  81 elrvgvhyqPsvyhlHlHvisldfespglkrk 112
                 ++ vgvh  Ps+++lH+Hvi++df s+ lk k
  CCD24919.1 116 FITVGVHSVPSMANLHIHVITKDFHSEKLKYK 147
                 9*************************998866 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   1.1   1.6e-16   5.9e-13       1      64 []     154     210 ..     154     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 49.1 bits;  conditional E-value: 1.6e-16
     zf-C2HE   1 tteFFvpledlpeelekdgeieslseeqskelilktpLkCtrCganfgnkfpkLKeHLeeefek 64 
                 + eF+ ++++lp  le+   ++     ++  l+++++L+C++C+anf+n+f+kLK+HL+eefe+
  CCD24919.1 154 NSEFYRKWDSLP--LEQIPVRD-----EMIDLVKHGDLICCYCNANFKNQFAKLKKHLNEEFEN 210
                 679*********..97777664.....455588*****************************96 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.98   3.5e+03       8      17 ..      84      93 ..      83      94 .. 0.82
   2 ?   -1.4   0.2       1.8   6.5e+03       8      20 ..     137     150 ..     133     152 .. 0.72
   3 ?   14.3   1.4   1.6e-05     0.058       2      21 ..     185     205 ..     184     213 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.98
   zf-C2H2_4  8 ksFsskkaLl 17
                k+F+sk++L 
  CCD24919.1 84 KTFTSKYKLV 93
                79****9985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
   zf-C2H2_4   8 ksFsskka.LlrHl 20 
                 k F+s k  +++H 
  CCD24919.1 137 KDFHSEKLkYKNHY 150
                 56777776688886 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 1.6e-05
   zf-C2H2_4   2 kCpiCgksFsskka.LlrHlk 21 
                 +C++C+++F+++ a L++Hl+
  CCD24919.1 185 ICCYCNANFKNQFAkLKKHLN 205
                 7*********999999***96 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2      0.69   2.5e+03      62      96 ..     126     161 ..     120     166 .. 0.58
   2 ?    9.5   5.2   0.00033       1.2      49      78 ..     182     214 ..     140     215 .] 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.69
   zf-C2H2_2  62 slealreHmkkk.gHckineeeeeekkeiekfydfl 96 
                 s+++l+ H+ +k  H +  + +++  +  ++fy+ +
  CCD24919.1 126 SMANLHIHVITKdFHSEKLKYKNHYLSFNSEFYRKW 161
                 566666676555235443333445556666777765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00033
   zf-C2H2_2  49 ekleClyCekefk.slealreHmkkk..gHcki 78 
                  +l+C+yC+ +fk + ++l++H++++  +H k+
  CCD24919.1 182 GDLICCYCNANFKnQFAKLKKHLNEEfeNHFKL 214
                 3799*****995548999****98864477765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1584.64
//
Query:       CCD24920.1  [L=154]
Description: hypothetical protein NDAI_0E01040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-29   98.6  16.7    5.9e-08   31.7   1.7    4.3  4  EF-hand_1     EF hand
    7.2e-24   84.0  14.7    1.2e-13   51.3   2.2    2.2  2  EF-hand_7     EF-hand domain pair
    9.9e-23   78.1  15.2    5.8e-07   28.9   0.6    4.3  4  EF-hand_6     EF-hand domain
    4.1e-16   58.6  16.1    1.2e-11   44.3   3.1    3.5  4  EF-hand_8     EF-hand domain pair
    6.7e-12   45.6   0.6    5.4e-05   23.4   0.0    2.2  2  EF-hand_9     EF-hand domain
    1.1e-11   43.7  24.2    9.1e-06   24.9   0.3    5.1  5  EF-hand_5     EF hand
    0.00036   20.4   7.2       0.12   12.4   0.3    2.8  3  EF-hand_4     Cytoskeletal-regulatory complex EF hand
    0.00085   19.6   3.7       0.16   12.3   0.3    2.2  2  EF-hand_14    EF-hand domain
  ------ inclusion threshold ------
      0.021   15.0   1.9       0.36   11.1   0.4    2.6  3  Dockerin_1    Dockerin type I domain
      0.023   14.6   0.7       0.51   10.2   0.1    2.6  3  SurA_N_2      SurA N-terminal domain
      0.043   14.1   3.7        2.9    8.3   0.4    2.3  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca
      0.066   13.0   0.6       0.36   10.6   0.1    2.0  2  SurA_N_3      SurA N-terminal domain
       0.11   12.3   0.1          9    6.2   0.0    2.3  2  EF-hand_13    EF-hand domain
       0.13   12.2   3.4          6    6.8   0.1    3.4  4  Caleosin      Caleosin related protein
        1.2    9.4   8.5        0.3   11.3   1.0    2.9  4  PhetRS_B1     Phe-tRNA synthetase beta subunit B1 domain
        6.9    7.3   6.8        9.9    6.8   0.4    3.0  3  VCBS          Repeat domain in Vibrio, Colwellia, Bradyrhizob


Domain annotation for each model (and alignments):
>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.3   1.2e-10   1.4e-07       2      28 ..      17      43 ..      16      44 .. 0.90
   2 !   19.5   0.1   4.3e-07   0.00049       2      26 ..      53      77 ..      52      79 .. 0.92
   3 !   26.4   0.2   2.6e-09     3e-06       1      28 [.      89     116 ..      89     117 .. 0.94
   4 !   31.7   1.7   5.2e-11   5.9e-08       1      28 [.     125     152 ..     125     153 .. 0.94

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.2e-10
                HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkellkk 28
                + e+F++fD ++dG++df Efk++ ++
  CCD24920.1 17 ILEAFNIFDLNKDGHLDFHEFKAATRA 43
                789*******************99775 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 4.3e-07
                HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkell 26
                l e+++++DkDg   I+fe+f+e++
  CCD24920.1 53 LLELISHYDKDGRHLINFEDFQEIM 77
                56899*******************9 PP

  == domain 3  score: 26.4 bits;  conditional E-value: 2.6e-09
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 e+k++F +fD Dg+GkI+ +++k+l k+
  CCD24920.1  89 EIKKAFHLFDEDGTGKITMKDLKKLAKS 116
                 79**********************9887 PP

  == domain 4  score: 31.7 bits;  conditional E-value: 5.2e-11
                 HHHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfkellkk 28 
                 elke+++efD DgdG I+ eEf++++++
  CCD24920.1 125 ELKEMIDEFDLDGDGGINEEEFISICTD 152
                 79*********************99875 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   4.9   1.1e-12   1.3e-09       3      70 ..      16      77 ..       5      78 .. 0.95
   2 !   51.3   2.2   1.1e-16   1.2e-13       3      70 ..      89     150 ..      88     151 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 1.1e-12
   EF-hand_7  3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                ++ eaF+ +D ++dg+ld  e++ + r        g+++++++l +l+   D+d+ + i+f++F++++
  CCD24920.1 16 DILEAFNIFDLNKDGHLDFHEFKAATR------ALGFEVDKKQLLELISHYDKDGRHLINFEDFQEIM 77
                7899*******************7777......9********************************98 PP

  == domain 2  score: 51.3 bits;  conditional E-value: 1.1e-16
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70 
                 ++k aF ++D dg+g++++ +l++l +      + +  +sdeel+++++efD+d+dG i+ +EF  ++
  CCD24920.1  89 EIKKAFHLFDEDGTGKITMKDLKKLAK------SLDIRISDEELKEMIDEFDLDGDGGINEEEFISIC 150
                 5899*******************9999......9******************************9887 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.6   5.2e-10   5.8e-07       2      31 .]      17      45 ..      16      45 .. 0.92
   2 !   11.5   0.1    0.0002      0.22       4      27 ..      55      78 ..      48      84 .. 0.87
   3 !   28.3   0.4   8.3e-10   9.3e-07       1      29 [.      89     116 ..      89     118 .. 0.91
   4 !   18.2   0.3   1.4e-06    0.0016       1      27 [.     125     151 ..     125     154 .] 0.90

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 5.2e-10
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalrkalg 31
                + eaF++fD ++dG++d++E+++a r alg
  CCD24920.1 17 ILEAFNIFDLNKDGHLDFHEFKAATR-ALG 45
                789********************998.776 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.0002
   EF-hand_6  4 eaFklfDkdgdGkidaeElrkalr 27
                e+  ++Dkdg   i++e+++ ++ 
  CCD24920.1 55 ELISHYDKDGRHLINFEDFQEIMI 78
                66679****************996 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 8.3e-10
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalrka 29 
                 e+++aF+lfD dg+Gki++++l+k+ + +
  CCD24920.1  89 EIKKAFHLFDEDGTGKITMKDLKKLAK-S 116
                 689********************9877.5 PP

  == domain 4  score: 18.2 bits;  conditional E-value: 1.4e-06
   EF-hand_6   1 elreaFklfDkdgdGkidaeElrkalr 27 
                 el+e  ++fD dgdG i+ eE++++++
  CCD24920.1 125 ELKEMIDEFDLDGDGGINEEEFISICT 151
                 5788889****************9987 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.6   4.8e-06    0.0054      31      51 ..      20      40 ..       5      44 .. 0.85
   2 !   14.1   0.4   2.9e-05     0.032       5      48 ..      32      73 ..      32      77 .. 0.95
   3 ?    2.4   0.0      0.12   1.4e+02      32      43 ..      94     105 ..      89     105 .. 0.87
   4 !   44.3   3.1     1e-14   1.2e-11       2      50 ..     102     148 ..     101     152 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4.8e-06
   EF-hand_8 31 lfrefDtdgdGkisfeEFcvl 51
                 f+ fD+++dG+++f EF + 
  CCD24920.1 20 AFNIFDLNKDGHLDFHEFKAA 40
                59****************976 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.9e-05
   EF-hand_8  5 ItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEF 48
                ++++e++ + r+lg +  + ++++ +l+++ D dg   i+fe+F
  CCD24920.1 32 LDFHEFKAATRALGFE--VDKKQLLELISHYDKDGRHLINFEDF 73
                589*****99******..*************************9 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.12
   EF-hand_8  32 frefDtdgdGki 43 
                 f +fD+dg Gki
  CCD24920.1  94 FHLFDEDGTGKI 105
                 779*******98 PP

  == domain 4  score: 44.3 bits;  conditional E-value: 1e-14
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcv 50 
                 +gkIt+ +l++ +++l ++  +s+ee+ ++++efD+dgdG i+ eEF+ 
  CCD24920.1 102 TGKITMKDLKKLAKSLDIR--ISDEELKEMIDEFDLDGDGGINEEEFIS 148
                 8**********99999999..**************************85 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.8e-08   5.4e-05       3      65 ..      20      80 ..      19      81 .. 0.95
   2 !   20.6   0.1   3.7e-07   0.00041       3      61 ..      93     149 ..      91     153 .. 0.90

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 4.8e-08
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrvmrew 65
                 F+++D +k G     + ++  ra +  +    +L el + +D dg+  ++++++f+++m +w
  CCD24920.1 20 AFNIFDLNKDGHLDFHEFKAATRALGF-EVDKKQLLELISHYDKDGR-HLINFEDFQEIMIQW 80
                49*************************.78888**************.*************99 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 3.7e-07
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdldtflrv 61 
                  F+++D + tG++++++l+++ +       ++ eL e   e+D dg  + ++ + f  +
  CCD24920.1  93 AFHLFDEDGTGKITMKDLKKLAKSLDI-RISDEELKEMIDEFDLDGD-GGINEEEFISI 149
                 6**********************9999.88899***********998.88999888766 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.3   8.1e-09   9.1e-06       2      23 ..      19      39 ..      17      40 .. 0.90
   2 ?   -0.2   0.5      0.73   8.2e+02      11      23 ..      61      75 ..      60      77 .. 0.53
   3 !   14.4   0.1   1.8e-05      0.02       1      24 [.      90     113 ..      90     114 .. 0.93
   4 ?    3.2   0.2     0.059        66      15      24 ..     120     129 ..     120     130 .. 0.89
   5 !   15.3   4.1   9.3e-06      0.01       1      22 [.     126     147 ..     126     149 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 8.1e-09
                HHHHHHH-SS-SSCE-HHHHHH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIskeELkt 23
                ++ F+ +DlN+DG++++ E+k+
  CCD24920.1 19 EA-FNIFDLNKDGHLDFHEFKA 39
                55.*****************85 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.73
                S-SSC..E-HHHHHH CS
   EF-hand_5 11 NgDGk..IskeELkt 23
                ++DG+  I++e +++
  CCD24920.1 61 DKDGRhlINFEDFQE 75
                555543366666666 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 1.8e-05
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 +k++F  +D +g GkI++  Lk+l
  CCD24920.1  90 IKKAFHLFDEDGTGKITMKDLKKL 113
                 6889*****************997 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.059
                 CE-HHHHHHH CS
   EF-hand_5  15 kIskeELktl 24 
                 +Is eELk++
  CCD24920.1 120 RISDEELKEM 129
                 7*******97 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 9.3e-06
                 HHHHHHHH-SS-SSCE-HHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELk 22 
                 lk++ +++Dl+gDG I+ eE+ 
  CCD24920.1 126 LKEMIDEFDLDGDGGINEEEFI 147
                 677899**************95 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.3    0.0001      0.12      47      71 ..      19      43 ..       4      59 .. 0.73
   2 ?    0.4   0.1      0.54     6e+02      44      69 ..      52      77 ..      45      85 .. 0.61
   3 !   11.0   0.4   0.00027      0.31       7      66 ..      88     147 ..      81     152 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
   EF-hand_4 47 kiwdladidedgkldfeefciamrl 71
                + +++ d+++dg+ldf+ef  a r 
  CCD24920.1 19 EAFNIFDLNKDGHLDFHEFKAATRA 43
                447889*************988874 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.54
   EF-hand_4 44 klekiwdladidedgkldfeefciam 69
                +l ++ +  d d    ++fe+f  +m
  CCD24920.1 52 QLLELISHYDKDGRHLINFEDFQEIM 77
                44444444444444458899886555 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00027
   EF-hand_4   7 leikkyweifsglkpednkltgdkvapvlknskleedklekiwdladidedgkldfeefc 66 
                 leikk +++f      + ++++ k  +   + ++++++l+++ d  d+d dg ++ eef+
  CCD24920.1  88 LEIKKAFHLFDEDGTGKITMKDLKKLAKSLDIRISDEELKEMIDEFDLDGDGGINEEEFI 147
                 58999999998665555555444444444467999************************7 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.3    0.0019       2.1       6      66 ..      21      85 ..      15      93 .. 0.83
   2 !   12.3   0.3   0.00014      0.16       6      45 ..      94     133 ..      89     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0019
  EF-hand_14  6 fdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklkkvekekseaeeset....leldre 66
                f++f+ +++++l ++++ +a ++ G + d   L el+++  k  ++  + e+ ++    + l+r+
  CCD24920.1 21 FNIFDLNKDGHLDFHEFKAATRALGFEVDKKQLLELISHYDKDGRHLINFEDFQEimiqWMLERD 85
                99999999******************************999988887766665554444666665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00014
  EF-hand_14   6 fdlfkdeetdklsvakllkaLaetGirkdDpRLkellkkl 45 
                 f lf++++t+k+ +++l k  ++  ir +D  Lke+++++
  CCD24920.1  94 FHLFDEDGTGKITMKDLKKLAKSLDIRISDEELKEMIDEF 133
                 99***********************************987 PP

>> Dockerin_1  Dockerin type I domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.14   1.6e+02      37      45 ..      24      32 ..       6      44 .. 0.81
   2 ?    3.5   0.0     0.072        81      37      57 ..      97     117 ..      75     118 .. 0.77
   3 ?   11.1   0.4   0.00032      0.36       3      47 ..      98     143 ..      96     148 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.14
                GSTT-SSCE CS
  Dockerin_1 37 aDvNgDGrv 45
                +D+N+DG  
  CCD24920.1 24 FDLNKDGHL 32
                688888865 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.072
                 GSTT-SSCESHHHHHHHHHHH CS
  Dockerin_1  37 aDvNgDGrvnalDallvinyL 57 
                 +D +g G++++ D+  + + L
  CCD24920.1  97 FDEDGTGKITMKDLKKLAKSL 117
                 6778899******99998876 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00032
                 ETTSSSC-SHHHHHHHHHHCT.SSEBTTSCCCHGGGSTT-SSCESH CS
  Dockerin_1   3 DVNgDgkVnalDalliinyln.qregqssssngkaaDvNgDGrvna 47 
                 D +g gk++  D+  + + l  + ++++ +++ + +D++gDG +n 
  CCD24920.1  98 DEDGTGKITMKDLKKLAKSLDiRISDEELKEMIDEFDLDGDGGINE 143
                 778889***************99999999**************996 PP

>> SurA_N_2  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         1   1.2e+03     112     143 ..      11      39 ..       5      41 .. 0.74
   2 ?    2.6   0.0     0.099   1.1e+02     100     121 ..      38      59 ..      35     101 .. 0.86
   3 ?   10.2   0.1   0.00046      0.51      94     121 ..     105     132 ..      68     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1
    SurA_N_2 112 deelqdaiqgnpaikqsFq.petGkFdkeklkq 143
                 ++e +d+++        F  +++G+ d  ++k+
  CCD24920.1  11 EDEKRDILEAFNI----FDlNKDGHLDFHEFKA 39 
                 5566666666666....9999***999988876 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.099
    SurA_N_2 100 eqeaeklGltvsdeelqdaiqg 121
                 + + + lG++v +++l ++i+ 
  CCD24920.1  38 KAATRALGFEVDKKQLLELISH 59 
                 567889***********99986 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00046
    SurA_N_2  94 vseklleqeaeklGltvsdeelqdaiqg 121
                 ++ k l++ a++l +++sdeel+++i +
  CCD24920.1 105 ITMKDLKKLAKSLDIRISDEELKEMIDE 132
                 566678999*****************87 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.4    0.0026       2.9      52      83 ..      13      44 ..       1      76 [. 0.68
   2 ?    7.3   0.2    0.0051       5.7      56     112 ..      90     148 ..      74     150 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0026
  SPARC_Ca_bdg 52 ckepvawkFsklDtnsdkvlsksELaplrapl 83
                   k  +   F+ +D n+d++l+ +E ++ +  l
    CCD24920.1 13 EKRDILEAFNIFDLNKDGHLDFHEFKAATRAL 44
                  55666678****************99877644 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0051
  SPARC_Ca_bdg  56 vawkFsklDtnsdkvlsksELaplraplv..klehCikpflescDadkdkkislkEwce 112
                   ++  F+ +D +  + ++ ++L++l ++l+    ++  k+++++ D+d d+ i+ +E+++
    CCD24920.1  90 IKKAFHLFDEDGTGKITMKDLKKLAKSLDirISDEELKEMIDEFDLDGDGGINEEEFIS 148
                   55679999999999999999**999987522578899*******************975 PP

>> SurA_N_3  SurA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.22   2.5e+02      95     120 ..      35      60 ..       2      89 .. 0.71
   2 ?   10.6   0.1   0.00032      0.36      92     133 ..     105     145 ..      64     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.22
    SurA_N_3  95 alllqeakklglsvsdeevakeiasi 120
                   ++++ + lg++v ++++ + i+ +
  CCD24920.1  35 HEFKAATRALGFEVDKKQLLELISHY 60 
                 45566777788888888887777665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00032
    SurA_N_3  92 idealllqeakklglsvsdeevakeiasipaFqedGkFdker 133
                 i+ + l++ ak l +++sdee++++i + + +  dG  ++e+
  CCD24920.1 105 ITMKDLKKLAKSLDIRISDEELKEMIDEFD-LDGDGGINEEE 145
                 77788999******************8775.55566666665 PP

>> EF-hand_13  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.014        15       3      41 ..      50      92 ..      49      99 .. 0.77
   2 ?    6.2   0.0    0.0081         9      55      77 ..      90     112 ..      88     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.014
  EF-hand_13  3 aarlfrlLk...kpgknyltredlkp.lvkelvetHPgLeFlr 41
                +++l++l++   k+g++ ++ ed++  +++ ++e+ P Le  +
  CCD24920.1 50 KKQLLELIShydKDGRHLINFEDFQEiMIQWMLERDPMLEIKK 92
                678888888555777799******983578899****999655 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0081
  EF-hand_13  55 iarifysvnrswsgkitlkelrk 77 
                 i++ f+  +  ++gkit+k+l+k
  CCD24920.1  90 IKKAFHLFDEDGTGKITMKDLKK 112
                 56778888999999999999987 PP

>> Caleosin  Caleosin related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0054         6      12      37 ..      23      48 ..      17      60 .. 0.89
   2 ?    1.5   0.0      0.22   2.5e+02      94     124 ..      52      82 ..      47      92 .. 0.70
   3 ?    2.6   0.0     0.099   1.1e+02      97     119 ..      92     114 ..      85     124 .. 0.58
   4 ?   -0.3   0.0      0.79   8.8e+02       6      25 ..     126     145 ..     121     152 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0054
    Caleosin 12 FfDrdkdGiiypldtyrgfralgfnv 37
                 fD +kdG + +++   + ralgf+v
  CCD24920.1 23 IFDLNKDGHLDFHEFKAATRALGFEV 48
                6***********************87 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.22
    Caleosin  94 kfeeifskyakekkdaltlkevlellkgqre 124
                 ++ e+ s+y+k+ ++ +++++++e++ + + 
  CCD24920.1  52 QLLELISHYDKDGRHLINFEDFQEIMIQWML 82 
                 5556778888888888888888877765554 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.099
    Caleosin  97 eifskyakekkdaltlkevlell 119
                 + f+ ++++ ++++t+k++++l 
  CCD24920.1  92 KAFHLFDEDGTGKITMKDLKKLA 114
                 34555555555555555555444 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.79
    Caleosin   6 LqqHvaFfDrdkdGiiypld 25 
                 L++ ++ fD d dG i   +
  CCD24920.1 126 LKEMIDEFDLDGDGGINEEE 145
                 55666779999999997666 PP

>> PhetRS_B1  Phe-tRNA synthetase beta subunit B1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       9.5   1.1e+04      34      40 ..       8      14 ..       4      24 .. 0.53
   2 ?   -0.3   0.0       1.2   1.3e+03      13      31 ..      42      60 ..      36      64 .. 0.80
   3 ?    1.6   0.2      0.29   3.2e+02      19      40 ..      68      89 ..      46     110 .. 0.74
   4 ?   11.3   1.0   0.00026       0.3       9      43 ..     111     145 ..     105     153 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9.5
   PhetRS_B1 34 ElDeive 40
                ElDe ++
  CCD24920.1  8 ELDEDEK 14
                4444332 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.2
   PhetRS_B1 13 kalgkelteeeledllfef 31
                +alg e+++++l +l+ ++
  CCD24920.1 42 RALGFEVDKKQLLELISHY 60
                6788888899988888776 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.29
   PhetRS_B1 19 lteeeledllfefGlElDeive 40
                ++ e ++++++++ lE D + e
  CCD24920.1 68 INFEDFQEIMIQWMLERDPMLE 89
                5668999999999999997765 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00026
   PhetRS_B1   9 eaLfkalgkelteeeledllfefGlElDeiveeee 43 
                 ++L+k l+ ++++eel++++ ef l+ D  ++eee
  CCD24920.1 111 KKLAKSLDIRISDEELKEMIDEFDLDGDGGINEEE 145
                 5799************************9999987 PP

>> VCBS  Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.4    0.0089       9.9      48      59 ..      23      34 ..      16      35 .. 0.81
   2 ?   -2.1   0.0       5.4   6.1e+03      51      56 ..      60      65 ..      57      79 .. 0.71
   3 ?    2.8   0.5      0.16   1.8e+02      46      55 ..     130     139 ..      89     140 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0089
        VCBS 48 vgDlDgDGdlDl 59
                ++Dl+ DG+lD+
  CCD24920.1 23 IFDLNKDGHLDF 34
                679999999985 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 5.4
        VCBS 51 lDgDGd 56
                +D DG+
  CCD24920.1 60 YDKDGR 65
                455554 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.16
        VCBS  46 vavgDlDgDG 55 
                 ++ +DlDgDG
  CCD24920.1 130 IDEFDLDGDG 139
                 6667999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1113.92
//
Query:       CCD24921.1  [L=740]
Description: hypothetical protein NDAI_0E01050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-26   90.8   1.0    3.5e-24   85.2   0.5    2.5  2  TFR_dimer      Transferrin receptor-like dimerisation domain
      7e-05   22.6   0.0    0.00017   21.3   0.0    1.7  1  Peptidase_M28  Peptidase family M28
  ------ inclusion threshold ------
      0.024   14.3   0.0      0.046   13.4   0.0    1.4  1  Tetraspanin    Tetraspanin family


Domain annotation for each model (and alignments):
>> TFR_dimer  Transferrin receptor-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.014        84      82     115 ..     531     564 ..     515     568 .. 0.79
   2 !   85.2   0.5   5.8e-28   3.5e-24       1     118 [.     600     732 ..     600     735 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.014
   TFR_dimer  82 yagatFPgirdaieegdweeaqeqisivakaies 115
                  +++tF+ i +++++++ +ea +  +i+  ++++
  CCD24921.1 531 TKESTFANIEETLKDNNSTEAIQIFEITIYILDK 564
                 67899****************9999888888765 PP

  == domain 2  score: 85.2 bits;  conditional E-value: 5.8e-28
   TFR_dimer   1 lsldpLeeaikkfkkaaeefdkwadkwed.......v......ggaessllavrkrrkiNdklmrferafldpeglpgrpwykHvvfgp...slwtg.. 81 
                 l++d++ +a+ ++kk+ +e +kw +kw++       +      +++es   a+r+r+++N++l+++ ++ ++++gl+grp+yk ++fgp   +   +  
  CCD24921.1 600 LNFDKMIRALLRWKKIGTERQKWLNKWQShisssksKkknhkhNDIES-VSARRERCDWNNRLTDIAKKTCSEYGLTGRPFYKALLFGPtflR---Qrs 694
                 69**************************99987766156677455555.555559**********************************5542...334 PP

   TFR_dimer  82 .yagatFPgirdaieegdweeaqeqisivakaiesaae 118
                  +++++FP+++d+i +  w++aq++++ va++++ +a+
  CCD24921.1 695 dQDSWSFPAVKDSIMNLAWTSAQKELDDVARLLQLSAK 732
                 59********************************9887 PP

>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.9e-08   0.00017       1     189 [.     359     546 ..     359     554 .. 0.64

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 2.9e-08
                    EEEEEESTTCE.SEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHH....GGCCSSEEEEEEEESSCSGSSHHHHHHHH..HHCCCT CS
  Peptidase_M28   1 Nviatlegkat.devlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaa....sgsrpkrgvrflffdaEEagllGSkafak..akpelk 89 
                    Nvi+++eg+++ ++ ++l++   s+      i++GA     g+ +lL+ +++++      + +p r++ f+ f++ E+  +GS+ f +  + p ++
     CCD24921.1 359 NVIGKIEGREQpEKAIILSS---SRN----SIHHGAVYPNFGTTMLLQFVELFQIikkkYNWKPLRSIYFVSFGGNEYNHIGSTEFYEkySLPLQQ 447
                    88888888888566888876...333....37889999999******99998887766766689***********************753222333 PP

                    TEEEEEEECS-SSSS--EEE.HHHHHHCHHHHHHHHHHHHHTT-TTSCCEEEEES.STT-STTHHHHTTT--EEEE.CTSSS...-TTTTSTTSSG CS
  Peptidase_M28  90 kiaavlnlDmvgsggkellf.esgdkssselekelkalakpvgraaaedpfders.grgrsDhspflkagvpvldl.aetgf...pevyHtprDtl 179
                    +    +++  +g +   +     + ++++ l++ ++++          +++ + s  +   D +pfl++g+pv  +    +    ++ +Ht++ t+
     CCD24921.1 448 ELYSIVDITELGINVMHYANsSLKIETHPLLKNLFEDTTMDP------NMNVSVShVQHYGDWIPFLANGIPVSVIsD-PDLnlhKYPIHTKESTF 536
                    333333333333333222222333344444444444222211......2222222234458*************9952.3332225556******* PP

                    GGB-HHHHHH CS
  Peptidase_M28 180 dnidkdtlar 189
                    +ni+ +  ++
     CCD24921.1 537 ANIEETLKDN 546
                    ***9887665 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.7e-06     0.046      91     152 ..      76     137 ..      64     177 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.7e-06
                  XXXXXXXXXXX--HHH........HHHHHHHHHHHHHHHHHHTHHHHHHHHHHT---SSHH. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  91 llelaagilgfvfsdkargkvseiinnaievkyrddldlkkcqnlldslqkklsCCGvnsyk 152
                   ++l++ +l+f+ + ++ + ++ i  + i++++rd+ dl+k ++++++l +  +C+G ++ +
   CCD24921.1  76 YFLLVVFVLIFISQYDRIRHYKPIDHDLIREEVRDWIDLNKFEKNWEYLSNLPHCSGTKGDE 137
                  34455556777777777899999****************8889**************87633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       839  (0.0467957); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5255.57
//
Query:       CCD24922.1  [L=170]
Description: hypothetical protein NDAI_0E01060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-11   42.1   0.0    1.2e-10   41.7   0.0    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    1.2e-10   41.4   0.1    1.7e-10   40.9   0.1    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.9e-10   40.4   0.1    4.2e-10   39.9   0.1    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    0.00062   19.9   0.1    0.00072   19.7   0.1    1.2  1  Acetyltransf_4   Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.023   14.6   0.0      0.042   13.8   0.0    1.4  1  FR47             FR47-like protein
      0.066   12.8   0.1        3.5    7.3   0.2    2.2  2  DUF4222          Domain of unknown function (DUF4222)
       0.08   13.0   0.0        0.1   12.6   0.0    1.2  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
       0.14   12.0   0.0       0.23   11.3   0.0    1.3  1  Acetyltransf_18  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   5.2e-14   1.2e-10      18     117 .]      33     138 ..      18     138 .. 0.80

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 5.2e-14
                     HHHHHHHHHHHHSTTCEEEE..EEETTEEEEEEEEEEEET......TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETT CS
  Acetyltransf_1  18 daseeefeesfsleaegllv..aeedgeliGfisllkipd......ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveed 104
                     ++++ e ++      e+++   a++ + ++G++ ++  p       +  + ++ie++ V ++yrg+ +G++Ll+++ee++ ++  + ++++v  d
      CCD24922.1  33 ETFFQELFPKGNAKKETFFTqlAYYSEIPVGCVKAKLFPKkksdifL--KGVHIEFMTVLEQYRGNQIGTKLLNYIEEQCQSHHQHNVYVHVPTD 125
                     3334443333222334555588999999************9999665..789999****************************88888****999 PP

                     EHHHHHHHHH.TTE CS
  Acetyltransf_1 105 ndaairlYek.lGF 117
                      +  i+ Y k +GF
      CCD24922.1 126 ETNKIEWY-KnHGF 138
                     ********.66**9 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.1   7.4e-14   1.7e-10      26     109 ..      45     141 ..      20     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.9 bits;  conditional E-value: 7.4e-14
  Acetyltransf_10  26 ieegealllvaeeggkivGvi..el.rdgs........hisllfVdpeyrgqGigkaLleaveeeaekdgikl.eltvnasp.yavpfYeklGF 106
                       +++  ++ +a+ ++ +vG++  +l  +++        hi+ + V ++yrg+ ig++Ll+++ee+++ +++++  ++v  +  + ++ Y+++GF
       CCD24922.1  45 AKKETFFTQLAYYSEIPVGCVkaKLfPKKKsdiflkgvHIEFMTVLEQYRGNQIGTKLLNYIEEQCQSHHQHNvYVHVPTDEtNKIEWYKNHGF 138
                      34677888999999999**9966444444479999999**********************************99****999999********** PP

  Acetyltransf_10 107 kav 109
                      +  
       CCD24922.1 139 EID 141
                      966 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   1.9e-13   4.2e-10       7      75 ..      54     139 ..      33     140 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 1.9e-13
                     EEEETTEEEEEEEEEEES..........TCTEEEEE-GGGTTSSHHHHHHHHTTSEEE....EEEEEE....THH.HHHHHHHHTTEE CS
  Acetyltransf_7   7 VaeddgkivGfialslld..........aeitrlaVdpeyrgkGiGraLleaaekgii....leqlel....nae.kaikfYeklGFe 75 
                     +a+  + +vG++ ++l             +i+++ V+++yrg+ iG++Ll+++e++++      ++++    + e + i++Y+ +GFe
      CCD24922.1  54 LAYYSEIPVGCVKAKLFPkkksdiflkgVHIEFMTVLEQYRGNQIGTKLLNYIEEQCQshhqH-NVYVhvptD-EtNKIEWYKNHGFE 139
                     466667789999988888999999888788888******************944445433221.222232422.146799*******8 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   3.2e-07   0.00072      57     139 ..      58     143 ..       9     155 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.2e-07
  Acetyltransf_4  57 sdrivGyaylgqfkkrakd.....wkaelsvylaerdnnkeglgrelidaleqvlkeqnienllaeiaspnensiqfhkalGFelvgi 139
                     s+  vG  +++ f k+  d      + e  + l  ++ + + +g +l++++e+  +  + +n +  +  +++n+i+ +k++GFe+  +
      CCD24922.1  58 SEIPVGCVKAKLFPKKKSDiflkgVHIEFMTVL--EQYRGNQIGTKLLNYIEEQCQSHHQHNVYVHVPTDETNKIEWYKNHGFEIDTE 143
                     666666666665544211111100233444444..46888999****************************************98655 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.9e-05     0.042      23      81 ..      83     142 ..      77     145 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.9e-05
                 SEEEEEE-GGG-SSSHHHHHHHHHHHHHHH.S-S-EEEEEETT-HHHHHHHHHHT-EEEE CS
        FR47  23 elgalqvlpehrrrGlgsrlvkalakeiae.rgktvllvvvasNtpsirlyeklGfekie 81 
                  +  + vl++ r+   g++l + + ++     +++v ++v +++t+ i+ y+  Gfe ++
  CCD24922.1  83 HIEFMTVLEQYRGNQIGTKLLNYIEEQCQShHQHNVYVHVPTDETNKIEWYKNHGFEIDT 142
                 577899**********************99899***********************9775 PP

>> DUF4222  Domain of unknown function (DUF4222)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.024        54       5      25 ..       8      28 ..       4      37 .. 0.86
   2 ?    7.3   0.2    0.0016       3.5      10      51 ..     113     156 ..     105     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.024
     DUF4222  5 pgdiYrDkrGvvVkvisvden 25
                +++ Y+++ GvvVk   ++en
  CCD24922.1  8 LDNVYENNLGVVVKLAAIEEN 28
                6789**********9998876 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0016
     DUF4222  10 rDkrGvvVkvisvdenrVtFrR.dGYe.hpcvaplerFnkeFer 51 
                 +++++v V+v   ++n++  +   G+e  + v pl++F k+F++
  CCD24922.1 113 HHQHNVYVHVPTDETNKIEWYKnHGFEiDTEVSPLQDFFKDFQP 156
                 689999999999999999999999999446799*********97 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.7e-05       0.1      74     127 ..      82     140 ..      44     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.7e-05
                     EEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHT.T--EEEE--....SSHHHHHTTT-EE CS
  Acetyltransf_9  74 agvtgVavapehrgrgvlskLlaraleemree.gqplsllfP....ssipiYrrfGyei 127
                       +   +v  ++rg+++ +kLl++  e+++++ ++++ + +P     +i+ Y+  G+ei
      CCD24922.1  82 VHIEFMTVLEQYRGNQIGTKLLNYIEEQCQSHhQHNVYVHVPtdetNKIEWYKNHGFEI 140
                     5677788999*********************97889999999888777899*9999986 PP

>> Acetyltransf_18  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001      0.23      67     104 ..     106     143 ..      96     148 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0001
  Acetyltransf_18  67 lkalvanaegkkvridvpeenkalielleklgfkevfe 104
                      +++ ++++++ +v+++vp+ +++ ie+ +++gf+  +e
       CCD24922.1 106 IEEQCQSHHQHNVYVHVPTDETNKIEWYKNHGFEIDTE 143
                      677899999999*********************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1427.65
//
Query:       CCD24923.1  [L=203]
Description: hypothetical protein NDAI_0E01070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-47  158.5   4.6    1.2e-46  158.2   4.6    1.1  1  Tma16     Translation machinery-associated protein 16


Domain annotation for each model (and alignments):
>> Tma16  Translation machinery-associated protein 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.2   4.6   6.6e-51   1.2e-46       2     145 ..      20     167 ..      19     168 .. 0.98

  Alignments for each domain:
  == domain 1  score: 158.2 bits;  conditional E-value: 6.6e-51
       Tma16   2 kkalHpkSRkakqLaraalRdeklakkkkerakkkssllervkffqealde....ekkplsleelkeliekylkRndeeleelkserrkgrpkskreel 96 
                 k ++Hpk+Rk++qL+ra+lR+ k+a kkk+++++ks++l+rvkf+q+ ++     +  ++s++++  +ie++++R+d el+ lk++rr +rp+++++ +
  CCD24923.1  20 KPTVHPKGRKFHQLNRATLREGKIASKKKAHNERKSNELSRVKFIQDVINMdefkDIRAFSNDQTIIFIEQFISRDDAELDDLKKKRRANRPPTNKQLI 118
                 6789********************************************9988899999***************************************** PP

       Tma16  97 leekkereeeeyetGfevpDLtdeenvkllreWngdlsslstlkfiris 145
                 l+ k++ e ee+++Gf +pDL de+nv++lr+Wn +++s+stlk+iri+
  CCD24923.1 119 LQGKRDLEMEEFKKGFLCPDLNDEKNVEFLRKWNHSFGSMSTLKLIRIN 167
                 ***********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1615.80
//
Query:       CCD24924.1  [L=306]
Description: hypothetical protein NDAI_0E01080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-17   63.0   0.0    1.3e-08   35.3   0.0    2.2  2  Rhodanese  Rhodanese-like domain


Domain annotation for each model (and alignments):
>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   7.2e-10   1.3e-05      23      98 ..      42     123 ..       9     129 .. 0.87
   2 !   35.3   0.0   7.2e-13   1.3e-08      14     106 ..     181     292 ..     169     293 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 7.2e-10
   Rhodanese  23 eeYek.ghIpgAvnv...skdtlsrakkseapllelpeellel.gidnkktvvvycdgggr.aaaaaallkklGyknvsvld 98 
                 ee+ +  +Ip A+ +     + +  +++++ap+l ++ +++++ g+++++ +vvy++ g+  a + a++l   G++++++l+
  CCD24924.1  42 EEFLTqERIPRALYFdidGIKDRESPYPHMAPSLSTFNKAMSQlGVRRDDILVVYDRIGNFsAPRCAWTLALFGHPTIYLLN 123
                 56766699*******9996667788999*********************************77777999999**888**998 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 7.2e-13
   Rhodanese  14 vallDvRppeeY...........ekghIpgAvnv......skdtlsrakkseapllelpeellel..gidnkktvvvycdgggraaaaaallkklGykn 93 
                 + ++D+R+  ++             ghI+gA  +       ++ +++++ + +   +l +++++l  ++d+kk+ ++ c +g   a  +++l+  G++n
  CCD24924.1 181 YNVFDARALGRFegkdpeprpglPSGHIKGAQPLpftevlDSNDKTYPEDEVKMNVKLQDAFRKLnnQFDPKKPTICMCGTGVTGAIIKNALEISGVPN 279
                 33889996666644444444444668*********999983333333333333444444444444668****************8888999999***** PP

   Rhodanese  94 vsvldGGfkawke 106
                 v+++dG++++w+ 
  CCD24924.1 280 VKLYDGSWTEWAL 292
                 ***********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       399  (0.0222544); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2456.19
//
Query:       CCD24925.1  [L=461]
Description: hypothetical protein NDAI_0E01090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.5e-29  101.1   0.0    1.2e-28  100.2   0.0    1.5  1  CLP1_P        mRNA cleavage and polyadenylation factor CLP1 P
    1.7e-24   86.5   0.0    3.3e-24   85.6   0.0    1.5  1  Clp1          Pre-mRNA cleavage complex II protein Clp1
    2.1e-21   75.9   0.0    4.2e-21   75.0   0.0    1.5  1  CLP1_N        N-terminal beta-sandwich domain of polyadenylat
     0.0077   16.0   0.0      0.027   14.2   0.0    1.9  2  PduV-EutP     Ethanolamine utilisation - propanediol utilisat
     0.0094   16.0   0.1      0.028   14.5   0.0    1.8  2  MMR_HSR1      50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.022   14.1   0.1      0.034   13.4   0.1    1.3  1  TcdA_TcdB     TcdA/TcdB catalytic glycosyltransferase domain
      0.025   13.9   0.0      0.045   13.1   0.0    1.4  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
      0.031   14.5   0.0        0.1   12.8   0.0    1.9  1  Roc           Ras of Complex, Roc, domain of DAPkinase
      0.058   13.8   0.0       0.12   12.8   0.0    1.7  1  AAA_16        AAA ATPase domain
      0.068   12.9   0.0        0.2   11.4   0.0    1.7  2  AAA_24        AAA domain
      0.073   12.6   0.0       0.13   11.7   0.0    1.3  1  AAA_7         P-loop containing dynein motor region
       0.14   12.6   0.0       0.46   10.9   0.0    2.0  1  RNA_helicase  RNA helicase


Domain annotation for each model (and alignments):
>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.0   8.1e-32   1.2e-28       1     188 []     129     347 ..     129     347 .. 0.85

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 8.1e-32
      CLP1_P   1 GpkdsGKSTlarlLlNyalrkg.rkpvyvDlDvGqseispPgtislalverpi............dveegfsldaplvyffGdtspsdnpslylalvke 86 
                 G ++sGK++l+r+L+ ya+++  ++p++++l+++ + ++pPg++s++++++ +            ++++ +++++p+v  fG + +++n  lyl+++++
  CCD24925.1 129 GDTNSGKTALCRTLCSYAIKNMpYQPLFINLNPNEGIFTPPGCLSATPISDLLevqaqtwgqsmtSGATVLHNKQPIVKNFGLEEVTKNKPLYLNCIDQ 227
                 89*****************88758***************************99999******999999999**************************** PP

      CLP1_P  87 lareveekleenkkakasgliIntpGwvk........glgaellleliealepdvvvvldq....eellnelkrdlp.....lskvkvvklpks.pgvv 167
                 la+ v+e+l+++  +++sg+iIntp + +           ++ ll++i++l++ +vv+l++    e++ +++++ +      +++ +++++pk+ ++ +
  CCD24925.1 228 LAKDVNERLQNDVIVQRSGCIINTPPLSQfydnatnqYDSYDGLLKIIQCLNIGIVVILTNdtdeEQEKEKINKLFDklksiIDQNSIIRFPKLsGRFQ 326
                 *************************876555555442347999***************99865433333333333335446645556788888725556 PP

      CLP1_P 168 qrsreerrelreerireYFyg 188
                 + + + +r l++++ireYFyg
  CCD24925.1 327 DADDTYKRSLQRAAIREYFYG 347
                 7889999*************7 PP

>> Clp1  Pre-mRNA cleavage complex II protein Clp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   2.2e-27   3.3e-24       1     117 []     353     461 .]     353     461 .] 0.94

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 2.2e-27
                 ---EEEEEETTS-EEEEE-.------------.------TS-EEEE-.--GGGTTEEEEEESSSS....TCCTT--EEEEEEEEEEETTTTEEEEEESS CS
        Clp1   1 LsPysitvdfddlsiyrvgeeeaapssalPigeeekeseetklekveepsselqnsilavsqasakdseeevldssvlGFvyVtevdeekkkltvLsPv 99 
                 LsPy+  +dfd++ i+++          l ++++++  ++ +le+v  +++ lq++++a+++a++k+s+eev ++++lGF ++tev+e+++k+ vL+Pv
  CCD24925.1 353 LSPYAAGADFDEIVIWKS--------MELNVNMQQDMINPFQLESVPIEANVLQHALVAITYADRKASSEEVSKAPILGFGLITEVNEKRRKIWVLLPV 443
                 8****************5........3566777788899999****9999************************************************* PP

                 SS.-S-SEEEEEEEE--- CS
        Clp1 100 pgrlpskalilgslkwpe 117
                 pgr+p+ka+il+s+++ e
  CCD24925.1 444 PGRVPNKAIILTSYRYLE 461
                 ****************87 PP

>> CLP1_N  N-terminal beta-sandwich domain of polyadenylation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   2.8e-24   4.2e-21       1      90 [.      25     117 ..      25     119 .. 0.92

  Alignments for each domain:
  == domain 1  score: 75.0 bits;  conditional E-value: 2.8e-24
                 EE-TTEEEEEEE-SSS-EEEEEEEE--EETTEE--TT-EEEE-TT-EEEEEESS-EEEEEES-EE....EEEEES--SHHHHHHHHHHHHHHHH CS
      CLP1_N   1 eLekeselrfeveskeklkikllsGtaEifGtELaknkeytfskgtkfaiftwegcklevkgeae....seyvseetpmksylnlhlaLeklRq 90 
                 +L++ +e+++++++++kl+ik+ sG+aEifGtELa++ ey f+ ++k++++++e++ le+k+++     +  ++++t+ k ++nlh+aL+klR 
  CCD24925.1  25 TLKESTEWKIDIPTSSKLTIKIRSGIAEIFGTELANDIEYVFT-NWKISLLAVEDVILEWKCPDIsgnkALIIQQNTTSKFVYNLHFALDKLRT 117
                 599****************************************.9**************99977767755556779*****************7 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.8e-05     0.027       3      27 ..     124     148 ..     123     172 .. 0.82
   2 ?   -3.4   0.0       4.9   7.4e+03      91     109 ..     281     300 ..     262     308 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
   PduV-EutP   3 killiGkvgsGKttLtqalkgeelk 27 
                 +i+++G ++sGKt+L+++l   ++k
  CCD24925.1 124 RIMIVGDTNSGKTALCRTLCSYAIK 148
                 89****************9886655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.9
   PduV-EutP  91 eviGiitk.idlaedeenie 109
                  ++ i+t  +d  +++e+i+
  CCD24925.1 281 GIVVILTNdTDEEQEKEKIN 300
                 33333332234444444444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.9e-05     0.028       1      22 [.     124     145 ..     124     178 .. 0.80
   2 ?   -2.3   0.0       3.1   4.6e+03      78      98 ..     280     300 ..     231     316 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-05
                 EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge 22 
                 +++ivG +N+GK+ L ++l+  
  CCD24925.1 124 RIMIVGDTNSGKTALCRTLCSY 145
                 699****************975 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.1
                 EEEEEEETT..TTCSHHHHHHHH CS
    MMR_HSR1  78 lillvvdas..eeklkpldeele 98 
                 + ++v+  +  +   ++++e+++
  CCD24925.1 280 IGIVVILTNdtD--EEQEKEKIN 300
                 333333212221..122333333 PP

>> TcdA_TcdB  TcdA/TcdB catalytic glycosyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   2.3e-05     0.034      83     130 ..     292     340 ..     253     364 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.3e-05
                 HH..................HHHHHHHHHHHTTSTT-HHHHHHHHHHHS CS
   TcdA_TcdB  83 kraekdqlkdlldtl.vivaqkafinflkakgnkntkDeirkeyLekey 130
                 +++ek+++ +l+d+l  i+ q+ +i f k+ g  + +D++ k  L+++ 
  CCD24925.1 292 EEQEKEKINKLFDKLkSIIDQNSIIRFPKLSGRFQDADDTYKRSLQRAA 340
                 45899**********889999************************9975 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     3e-05     0.045      40      82 ..     123     164 ..      87     184 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3e-05
                   .SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS CS
  FtsK_SpoIIIE  40 shllvaGatgsGKStalntLilSlatthtPeeVqliliDykgv 82 
                   + ++++G t sGK+   +tL +S a ++ P +  +i + + ++
    CCD24925.1 123 PRIMIVGDTNSGKTALCRTL-CSYAIKNMPYQPLFINLNPNEG 164
                   489************99997.9********9988888888776 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.7e-05       0.1       1      24 [.     124     147 ..     124     160 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.7e-05
                 EEEEESSTTSSHHHHHHCHCT-CC CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkf 24 
                 ++++vGd+++GKt l++ +++  +
  CCD24925.1 124 RIMIVGDTNSGKTALCRTLCSYAI 147
                 69***************9998655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   7.8e-05      0.12      12      53 ..     108     164 ..     105     316 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 7.8e-05
      AAA_16  12 Llsalervrsgrp..elvllsGesGvGKsslvrellralekd.............gg 53 
                 L+ al+++r+ +   + ++++G+  +GK++l r+l  ++ k+             +g
  CCD24925.1 108 LHFALDKLRTASFngPRIMIVGDTNSGKTALCRTLCSYAIKNmpyqplfinlnpnEG 164
                 7888886666666669999*****************988888666555555555434 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013       0.2       2      31 ..     122     159 ..     121     164 .. 0.93
   2 ?   -2.5   0.0       2.3   3.5e+03     125     150 ..     284     308 ..     269     322 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
      AAA_24   2 klkiliyGpsgiGKTtlakel........gpkplfidt 31 
                 + +i+i+G+  +GKT l+++l        +++plfi++
  CCD24925.1 122 GPRIMIVGDTNSGKTALCRTLcsyaiknmPYQPLFINL 159
                 679*************************9******987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.3
      AAA_24 125 vifiahektrkdedpegeakytrlep 150
                 vi++  +++++ +++   + +++l++
  CCD24925.1 284 VILTNDTDEEQEKEKIN-KLFDKLKS 308
                 33333333333333222.23444444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.8e-05      0.13      32      70 ..     121     160 ..      95     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.8e-05
       AAA_7  32 nkkpvllvGptGtGKtviikd.llkkldkekylsltinfs 70 
                 n+  +++vG+t +GKt+++++ +  ++++  y++l+in++
  CCD24925.1 121 NGPRIMIVGDTNSGKTALCRTlCSYAIKNMPYQPLFINLN 160
                 56689****************7788899999*******97 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00031      0.46       1      41 [.     125     163 ..     125     193 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00031
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnped 41 
                   i+++G+++ GK+ l+++L++   k++  + ++ ++  np++
    CCD24925.1 125 IMIVGDTNSGKTALCRTLCSYAIKNM--PYQPLFINLNPNE 163
                   789******************99998..5556666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3190.12
//
Query:       CCD24926.1  [L=654]
Description: hypothetical protein NDAI_0E01100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-27   94.6   6.9    2.7e-27   94.6   6.9    3.0  3  ANAPC5    Anaphase-promoting complex subunit 5
     0.0012   19.0   0.1      0.022   14.9   0.0    2.6  3  Augurin   Oesophageal cancer-related gene 4
  ------ inclusion threshold ------
      0.016   15.2   0.3      0.075   12.9   0.1    2.2  2  DUF4294   Domain of unknown function (DUF4294)
      0.041   14.1   0.7         20    5.7   0.1    3.0  2  TPR_8     Tetratricopeptide repeat
      0.075   13.3   0.0         12    6.3   0.0    2.4  2  TPR_12    Tetratricopeptide repeat
       0.16   12.1   4.1        6.1    7.0   0.0    4.2  4  DUF3791   Protein of unknown function (DUF3791)
       0.17   12.0   2.5       0.65   10.1   0.1    2.9  3  DUF1694   Protein of unknown function (DUF1694)


Domain annotation for each model (and alignments):
>> ANAPC5  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   2.7e+03       5      31 ..     198     224 ..     196     238 .. 0.79
   2 !   94.6   6.9   1.1e-30   2.7e-27       1      93 [.     291     380 ..     291     381 .. 0.98
   3 ?   -1.4   0.1      0.95   2.4e+03      27      60 ..     597     627 ..     534     639 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
      ANAPC5   5 ylnalrakdYqqaldsLhryFDyvlsq 31 
                 +ln +++   +++ ds   +FD + ++
  CCD24926.1 198 HLNDVNDIMNNNSYDSIISIFDVMENT 224
                 566666666788999999999998765 PP

  == domain 2  score: 94.6 bits;  conditional E-value: 1.1e-30
      ANAPC5   1 hllsylnalrakdYqqaldsLhryFDyvlsqnessqkksyqyalLnlaslhadfghneeAvkaleeairlArenkDkscLalalawlarllkk 93 
                 h+l+yl+ +++  Y++aldsLh+yFDy+lsqn+++   +++ +lL+la++ ++f+++e+A+ka+eea+++ArenkD+++L+l+++w++++ ++
  CCD24926.1 291 HILRYLKYVSNLYYKDALDSLHKYFDYMLSQNSNN---YFHLSLLCLATFYSSFHDCEAAMKAFEEATKVARENKDTTTLNLIMIWMVNFIEE 380
                 89*********************************...****************************************************987 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.95
      ANAPC5  27 yvlsqnessqkksyqya..lLnlaslhadfghneeA 60 
                  ++ ++++      q    l+ l  l  ++g+++eA
  CCD24926.1 597 SSSVSRNQF-----QAMecLILLSELLLQLGKKDEA 627
                 222222222.....2222244455555556666665 PP

>> Augurin  Oesophageal cancer-related gene 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       2.1   5.4e+03      60     110 ..     153     203 ..     142     204 .. 0.54
   2 ?    0.5   0.0      0.26   6.7e+02      10      36 ..     255     280 ..     245     285 .. 0.81
   3 !   14.9   0.0   8.8e-06     0.022      19      71 ..     440     493 ..     420     511 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.1
     Augurin  60 lGfdeakleddlsywmdkarskdqGrqhhydenapigprdpssfrhGanvn 110
                   f  a +e++   w d +  ++  r          g+   ++frh  +vn
  CCD24926.1 153 KKFHVADFEENTRLWDDFKTVNESFRCSFLRRRRIDGDFPRRNFRHLNDVN 203
                 456666777777777776666654433222222222223335666666665 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.26
     Augurin  10 reaesapskasvavkeskakeflaklk 36 
                  ++e ++s+++v+ ++s+  +fl++++
  CCD24926.1 255 YKIE-NSSRPNVSSSSSRIDDFLNNVS 280
                 4555.67899*************9986 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 8.8e-06
     Augurin  19 asvavkeskakeflaklkrtkrnlwdr.srpdvqqwiqqflylGfdeakleddl 71 
                  ++ +++ +a+  l ++ r++rnlw+     +v + +q fl+  +de+   +d+
  CCD24926.1 440 MTIVLQHPRAESTLLNMIRYRRNLWNTlGYTNVAKMYQTFLKEQYDETDTLQDM 493
                 467789999****************973679****************9887776 PP

>> DUF4294  Domain of unknown function (DUF4294)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.97   2.5e+03     124     148 ..     110     134 ..     105     140 .. 0.81
   2 ?   12.9   0.1   2.9e-05     0.075     104     150 ..     450     496 ..     439     501 .. 0.89

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.97
     DUF4294 124 qtvAklfgisLkkeYdpekkeeDal 148
                 q +  l++ ++ ++Y   +k+eD+ 
  CCD24926.1 110 QLIRTLYNKNIVEKYTDLNKREDKA 134
                 6667789999999999999999976 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.9e-05
     DUF4294 104 gqtsYelikelrggfkAffyqtvAklfgisLkkeYdpekkeeDaliE 150
                 ++t  ++i+  r+ ++   y +vAk+++  Lk++Yd +++ +D +++
  CCD24926.1 450 ESTLLNMIRYRRNLWNTLGYTNVAKMYQTFLKEQYDETDTLQDMYVN 496
                 67788999999*****************************9**9986 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1    0.0083        21      18      34 .]     345     361 ..     334     361 .. 0.82
   2 ?    5.7   0.1    0.0079        20       3      21 ..     610     628 ..     609     632 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0083
                 HHHHHHHHHHHHHHHH. CS
       TPR_8  18 eeAkeyyekaleldpdn 34 
                 e+A++++e+a++ +++n
  CCD24926.1 345 EAAMKAFEEATKVAREN 361
                 89**********99875 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0079
                 HHHHHHHHHHHTT-HHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAk 21 
                  + +l+ ++l+lg+++eA+
  CCD24926.1 610 CLILLSELLLQLGKKDEAQ 628
                 577999************7 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.017        44       8      35 ..     333     360 ..     327     372 .. 0.59
   2 ?    6.3   0.0    0.0047        12      39      67 ..     602     630 ..     582     633 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.017
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarr 35 
                  la+++    +++ A + +e+a  +ar+
  CCD24926.1 333 CLATFYSSFHDCEAAMKAFEEATKVARE 360
                 4555555555555555555555555555 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0047
      TPR_12  39 pdhpltattlrnLgrlyralgryeeAlel 67 
                  +  ++ ++l+ L++l+++lg+ +eA+ l
  CCD24926.1 602 RNQFQAMECLILLSELLLQLGKKDEAQML 630
                 555667899*****************977 PP

>> DUF3791  Protein of unknown function (DUF3791)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0024       6.1      14      48 ..     127     162 ..     120     165 .. 0.90
   2 ?    2.8   0.0     0.048   1.2e+02       9      28 ..     383     402 ..     373     403 .. 0.88
   3 ?   -1.7   0.0       1.2   3.2e+03      23      40 ..     422     439 ..     418     440 .. 0.81
   4 ?   -0.8   0.2      0.64   1.6e+03      32      49 ..     478     495 ..     471     503 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0024
     DUF3791  14 lglsgkevykllkksgvl.dylidcYevlHtqSkey 48 
                 l+   ++++k  ++   l ++++ cY   H  ++e+
  CCD24926.1 127 LNKREDKAFKCVTRKSFLgRFMERCYKKFHVADFEE 162
                 6788899************************99986 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.048
     DUF3791   9 eyarklglsgkevykllkks 28 
                 +y+++++++ ++++k+++++
  CCD24926.1 383 QYSKRFQVTIDQIVKYMRRN 402
                 7999************9985 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.2
     DUF3791  23 kllkksgvldylidcYev 40 
                  ++++s+v+d l+ ++ +
  CCD24926.1 422 LIMNNSNVIDILESSFKY 439
                 58899*****99988765 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.64
     DUF3791  32 dylidcYevlHtqSkeyi 49 
                  +l+++Y+   t+ + y+
  CCD24926.1 478 TFLKEQYDETDTLQDMYV 495
                 699*****9999999886 PP

>> DUF1694  Protein of unknown function (DUF1694)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.13   3.4e+02      56      94 ..     102     140 ..      99     142 .. 0.85
   2 ?   10.1   0.1   0.00025      0.65      21      47 ..     138     164 ..     118     173 .. 0.83
   3 ?   -0.7   0.1      0.55   1.4e+03      49      77 ..     614     642 ..     600     647 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.13
                 HHC-SSEEEEEETTS-HHHHHHHHHHHHHTT--EEEE-- CS
     DUF1694  56 lkkkkalkllingkldedilskyiklakkenikftivnd 94 
                 +k+ +  + li+   +++i++ky +l k+e++ f+ v+ 
  CCD24926.1 102 IKDLDTITQLIRTLYNKNIVEKYTDLNKREDKAFKCVTR 140
                 66667777788888999******************9986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00025
                 HHHHHTTT--GGGEEEEEEHHHHTSSS CS
     DUF1694  21 dEkrryLGtfrERVilaltkeqveekk 47 
                   ++ +LG f ER++ +  ++++ee++
  CCD24926.1 138 VTRKSFLGRFMERCYKKFHVADFEENT 164
                 5699*****************999875 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.55
                 -HHHHHHHHC-SSEEEEEETTS-HHHHHH CS
     DUF1694  49 ykeleealkkkkalkllingkldedilsk 77 
                  +el  +l kk+++++l+n+++ +  + +
  CCD24926.1 614 LSELLLQLGKKDEAQMLMNSNMVKVLQFP 642
                 6778888999**********998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1063  (0.0592894); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4823.02
//
Query:       CCD24927.1  [L=236]
Description: hypothetical protein NDAI_0E01110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1013  (0.0565006); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1725.66
//
Query:       CCD24928.1  [L=630]
Description: hypothetical protein NDAI_0E01120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.7   0.0         33    4.8   0.0    3.0  2  Tugs        Tethering Ubl4a to BAGS domain
        7.4    6.8   7.0        2.7    8.2   0.1    3.7  4  Gal4_dimer  Gal4-like dimerisation domain


Domain annotation for each model (and alignments):
>> Tugs  Tethering Ubl4a to BAGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0047        43       3      30 ..      64      91 ..      63      99 .. 0.84
   2 ?    4.8   0.0    0.0036        33      25      47 .]     371     393 ..     368     393 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0047
        Tugs  3 qlaqvLakHFspqDaekVleqLrkeyer 30
                +l+  L + F++qD ++ l qL  e  r
  CCD24928.1 64 RLNSLLTRTFNAQDHNEKLWQLCSELIR 91
                68999**********9999999877655 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0036
        Tugs  25 rkeyersLrrlsLddiErLAkrL 47 
                 rk+ ++ L++++L+   ++ k++
  CCD24928.1 371 RKDADKILQKITLEKFIQITKHF 393
                 89************999998886 PP

>> Gal4_dimer  Gal4-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.36   3.2e+03      15      43 ..      65      93 ..      62     120 .. 0.59
   2 ?    8.2   0.1    0.0003       2.7      21      45 ..     367     391 ..     358     398 .. 0.84
   3 ?   -2.2   0.1      0.55   4.9e+03      30      45 ..     416     431 ..     405     438 .. 0.77
   4 ?   -0.7   0.0      0.18   1.6e+03      25      44 ..     555     574 ..     542     585 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.36
  Gal4_dimer 15 LEqlLrrllpeeDiDnlLknkhnnflkei 43
                L  lL r +  +D  + L +   + ++ i
  CCD24928.1 65 LNSLLTRTFNAQDHNEKLWQLCSELIRCI 93
                56666666666666655555444444444 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0003
  Gal4_dimer  21 rllpeeDiDnlLknkhnnflkeilt 45 
                  +l ++D+D++L+++  +++ +i  
  CCD24928.1 367 SILSRKDADKILQKITLEKFIQITK 391
                 6899****************99986 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.55
  Gal4_dimer  30 nlLknkhnnflkeilt 45 
                 + L+n++  +l  il 
  CCD24928.1 416 MFLQNDDLLQLTTILK 431
                 6799999999999986 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.18
  Gal4_dimer  25 eeDiDnlLknkhnnflkeil 44 
                 ++DiD ++ +   n+l  ++
  CCD24928.1 555 KQDIDSIIPQYGSNILELLK 574
                 48******999888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4428.75
//
Query:       CCD24929.1  [L=328]
Description: hypothetical protein NDAI_0E01130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-20   73.2   0.0    4.1e-18   65.5   0.0    3.0  2  adh_short     short chain dehydrogenase
    5.9e-12   45.6   0.0    4.4e-10   39.5   0.0    2.5  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
  ------ inclusion threshold ------
      0.017   15.1   0.0      0.037   13.9   0.0    1.5  1  KR            KR domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   6.9e-22   4.1e-18       1     138 [.      21     172 ..      21     181 .. 0.90
   2 ?    1.3   0.0     0.034     2e+02     144     186 ..     194     235 ..     190     241 .. 0.80

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 6.9e-22
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT...TSE...............EEEEE-TTTSHHHHHHHHHHHHHHHSSESEE CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee...gak...............alaiqvDvtdreevealvekavkklgkldvL 81 
                 kv+++tG+ sGIG  ++ +l+  G+ +++++r++ k+++++k +++e   + +               +++i++D+td + ve+   k++    ++d+L
  CCD24929.1  21 KVAVITGGNSGIGWYTVLHLYMHGVIIYICGRNSHKVNRAMKDIQNEafrR-RslekhdfkeersfgaMIYIHMDLTDLKTVERGCLKIIGLERQIDIL 118
                 89*******************************************997751.234455666677788799***************************** PP

                 EE---SS--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGG CS
   adh_short  82 vnNAGitgsgpfselseeewervievNltgvflltravlpamlkqssGrIvnvsSva 138
                 +nNA++   +   el+++ +e  +++N+ + fll+  +lp  lk+  GrI++ sSv 
  CCD24929.1 119 INNAAV--LALPYELTKDGFEIQLQTNYIAHFLLSLRLLPL-LKKGHGRIITLSSVG 172
                 ******..688899***************************.66999********96 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.034
                 TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS.SHH CS
   adh_short 144 agvaaYsAsKaavagltrslakelaptgirvnavaPGlvd.Tdm 186
                 + ++ Y+ +K a +++t+ l+  + +  + + +++PGlv  T++
  CCD24929.1 194 FTWIRYAVAKTASIQYTKMLSIKHPD--VLCLSLHPGLVMnTNL 235
                 57889*************99876655..8888888888876766 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   7.4e-14   4.4e-10      38     131 ..      82     173 ..      25     180 .. 0.74
   2 ?   -2.5   0.0      0.51     3e+03     141     157 ..     199     215 ..     195     230 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 7.4e-14
                   HHHTTSEE.EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGG CS
  adh_short_C2  38 aeelgaev.lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalplmkeg.gsivnlssvga 131
                   ++++ga + +++D td ++ve+   ++     ++Dil+nna++         e+++++f+  l++n  + fll+ ++lpl+k+g g+i++lssvg 
    CCD24929.1  82 ERSFGAMIyIHMDLTDLKTVERGCLKIIGLERQIDILINNAAVLAL----PYELTKDGFEIQLQTNYIAHFLLSLRLLPLLKKGhGRIITLSSVGH 173
                   233444437***********************************99....689*****************************999********986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.51
                   HHHHHHHHHHHHHHHHH CS
  adh_short_C2 141 ygaaKaalealtrylAv 157
                   y++aK a ++ t+ l  
    CCD24929.1 199 YAVAKTASIQYTKMLSI 215
                   99999999999999875 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   6.2e-06     0.037       4      93 ..      24     126 ..      22     144 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.2e-06
                 EEETTTSHHHHHHHHHHHHHHS-EEEEE-SS.................--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE CS
          KR   4 litGGlGgLGlelarwlaekgarhlvllsRsa...............aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvih 87 
                 +itGG  g+G  ++ +l+ +g   + +++R++               + ++ +k+ ++e ++ ga   ++++D++d + ve+   +i   e++i   i+
  CCD24929.1  24 VITGGNSGIGWYTVLHLYMHGV-IIYICGRNShkvnramkdiqneafRRRSLEKHDFKEERSFGAM-IYIHMDLTDLKTVERGCLKIIGLERQIDILIN 120
                 8********************7.6999****86666655555444443333333455555555655.58889999999999999999888899999888 PP

                 ------ CS
          KR  88 aAgvlr 93 
                  A vl+
  CCD24929.1 121 NAAVLA 126
                 888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       632  (0.0352502); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2551.98
//
Query:       CCD24930.1  [L=1094]
Description: hypothetical protein NDAI_0E01140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-43  148.2   0.0    1.9e-34  118.9   0.0    2.7  2  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    8.5e-17   61.0   0.1    1.5e-09   37.1   0.0    3.9  4  tRNA-synt_1g  tRNA synthetases class I (M)
    3.5e-12   46.5   0.0    8.7e-12   45.3   0.0    1.7  1  Anticodon_1   Anticodon-binding domain of tRNA
    4.2e-07   29.6   0.0    1.6e-06   27.7   0.0    1.9  2  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   4.5e-10     2e-06      17      86 ..      53     121 ..      44     170 .. 0.85
   2 !  118.9   0.0   4.3e-38   1.9e-34     105     602 .]     196     772 ..     187     772 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 4.5e-10
  tRNA-synt_1  17 ekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklga 86 
                  e + + ++f+     Py +G lH Gh ++ +  ++ i ++rm+Gk++l+  G+ + G++i a  +k l +
   CCD24930.1  53 ELHAKYPKFMSSMAYPYMNGVLHAGHCFTLSKVEFSIGFERMNGKKALFPLGFHCTGMPILACADK-LKR 121
                  455668999999************************************************776654.344 PP

  == domain 2  score: 118.9 bits;  conditional E-value: 4.3e-38
  tRNA-synt_1 105 rewkaeyaeeirkqvkrlGvsvDfdreylTldke..leeavkevfvrladkgliyrgkklvnwstklktalselEveykdkkdalihvafpl...... 194
                  + w +++    +++v+ +G +vD+ r  +T d +  + + v++ + rl + g i  g++   +s k   a  + + +  +   +  ++  ++      
   CCD24930.1 196 KYWLSYFPPLCESDVRSFGGRVDWRRSMVTTDANpyYDAFVRWQMNRLKQAGKIKFGERYTIYSEKDGQACMDHDRQSGEGVTPQEYIGIKIeatefa 293
                  5577777778899*****************9865448899********************************99998888775555555555445555 PP

  tRNA-synt_1 195 .............adkeevklviaTTtPeTllgdtavavnpeldyv...itkeklilaeallkslvkke.sek....kiledergkeLegkevelpl. 270
                               ++++++++v+aT +PeT+ g+t   v p ++y+   + + ++i  e   k++  ++ + k    k + ++ gke++g +++    
   CCD24930.1 294 egaqriidsvstiDKSKKIYFVAATLRPETMYGQTCCFVSPKINYGifdAGDSYYITTERAFKNMSYQKlTPKrgdyKPVVTIPGKEFIGTKIHASSs 391
                  555555555555478888****************************8887889999999988887544433332334889999*******99987654 PP

  tRNA-synt_1 271 vnrkipiiaddyvdkeaGtGvVkiaPahdedDyevgkkynl................evinildedgtlteea......................... 327
                     +++i+  + v + +GtGvV + P   +dD+ ++k+                    +i   ++ g++t ea                         
   CCD24930.1 392 IYGELRILPMETVIATKGTGVVTCVPSNSPDDFMTTKDLLHkpeyygidpewvksdiLPIIRTEKYGDITAEAickemkiqspkdinllaeakkaayk 489
                  789******************************9998632255666669999997655566667889999999************************* PP

  tRNA-synt_1 328 ..........aefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpiiyrateqWfvrvke..ladaalkavekvqfvpkskekryaswl 413
                            ++++g kv+ a++kv ++l + g  +  ++ e    + +rs++  i+ + +qW+v   e   +++a++ +e++++     ++ ++  l
   CCD24930.1 490 edfysgtmiyGKYKGEKVEVAKNKVKADLIAAGEAFVYNEPESL--VVSRSGDECIVSLEDQWYVDYGEesWKKQAVECLESMELFAPEVKNAFEGVL 585
                  *****************************999976665554433..468****************9977679*********99999889999****** PP

  tRNA-synt_1 414 eniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkalekeakdkl...kkekgelekdedvlDvWFsSgswpfst..lgypee 506
                     ++W++ R    G+++p +  k   e        + +  ++  + ++  +++++ +++   + +++++   ++v+D  F+      s   l + ++
   CCD24930.1 586 DWLKNWAVCRTYGLGTKLP-WDPKYLVESLS-----DSTIYQSFYTISHLLFKDYFGKDIgplNIKAEQM--TDEVFDYIFQHVDDVKSDipLRSLQT 675
                  ******************9.55554444444.....2222223333333444444455552114444443..468******99888777612344556 PP

  tRNA-synt_1 507 dteelkkffpadmlleGlDiirgWvarlillslaltgsePf.kevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltli.lsdvgrdinls 602
                   ++e++ f+p d+ ++G D i   ++  i + +al+ ++ + k +  +g ++ ++  KmSKs gN +  +++++k gada R +l+   d+++d n++
   CCD24930.1 676 LRREFEYFYPLDVSISGKDLIPNHLTFFIYTHVALFPKKFWpKGIRANGHLMLNN-AKMSKSTGNFMTLEQIVEKFGADASRIALAdAGDTVEDANFD 772
                  799*********************************9996636788888776654.79****************************999999999985 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.3e-07    0.0015       4      72 ..      64     132 ..      61     148 .. 0.92
   2 ?   -0.8   0.0      0.11   4.9e+02     103     186 ..     239     314 ..     225     323 .. 0.64
   3 ?    0.2   0.0     0.055   2.5e+02     172     241 ..     538     607 ..     488     615 .. 0.78
   4 !   37.1   0.0   3.4e-13   1.5e-09     285     371 ..     688     776 ..     672     781 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3.3e-07
                   EE--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHH CS
  tRNA-synt_1g   4 ttalpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegvtpeelvekvhe 72 
                   + a pY+ng+lH Gh  +  +    + ++r++g++ lf  g    G+pi   A+k + ++e + +++++
    CCD24930.1  64 SMAYPYMNGVLHAGHCFTLSKVEFSIGFERMNGKKALFPLGFHCTGMPILACADKLKREAELFGTDYSN 132
                   5799***************************************************99999888887766 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.11
                   HHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-EE........-TTS-EE.-TTSSB-E................EEE.EEEEEE CS
  tRNA-synt_1g 103 ifkklkekgliyekeieqlycpkderflpdryvegtCPkckseeargdqc.eecgkkleptelinpksaisgskpevketehlff 186
                    +++lk+ g+i+ +e   +y++kd++   d            ++ +g    e  g k+e te+ +    i +s  ++ ++++++f
    CCD24930.1 239 QMNRLKQAGKIKFGERYTIYSEKDGQACMDHD---------RQSGEGVTPqEYIGIKIEATEFAEGAQRIIDSVSTIDKSKKIYF 314
                   56788999999999999999999988777665.........22223333225555555555555555555555555555555555 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.055
                   .....EEE.EEEEEE-GGG..GHHHHHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SSS-EETTEC CS
  tRNA-synt_1g 172 sgskpevketehlffklsk..fekklkewieeeekeleenvkkivkewlkegLkdlaisrdldwGipvPgae 241
                   sg++ +v+ +++++ +  +  ++k+  e + e+ +    +vk+  + +l+  Lk++a+ r+   G ++P ++
    CCD24930.1 538 SGDECIVSLEDQWYVDYGEesWKKQAVECL-ESMELFAPEVKNAFEGVLDW-LKNWAVCRTYGLGTKLPWDP 607
                   455666777777777765411566666666.44446888999999999998.99***********9999544 PP

  == domain 4  score: 37.1 bits;  conditional E-value: 3.4e-13
                   EEEEEGGGHHHHHTHHHHHHHH..TT----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHHHS-TTS-EEE-HHHH CS
  tRNA-synt_1g 285 vhfigkdiikFHtifwPaillg..aelklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaaeapekkDldfswedf 371
                   v + gkd i+ H  f+  +  +   +   pk + a+++l+++++K+SkS g++++ ++++e++ ad+ R  la ++++ +D++f ++++
    CCD24930.1 688 VSISGKDLIPNHLTFFIYTHVAlfPKKFWPKGIRANGHLMLNNAKMSKSTGNFMTLEQIVEKFGADASRIALADAGDTVEDANFDEANA 776
                   5677************9999997766779*******************************************************98775 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   1.9e-15   8.7e-12       4     146 ..     813     936 ..     810     952 .. 0.78

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 1.9e-15
  Anticodon_1   4 ilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedkraaqevllevletllrllaPfmPfitEelwqreeeelgkkes 101
                  + +e+n+l++++ e y   ++++a++     f+ +  d+y e++ + +++           ++  ++e    +laP++P+++E+++   +e lg++ s
   CCD24930.1 813 FEHEMNSLIEKTYEQYSLTNYKNALKYGLFDFQAAR-DYYREASGS-MHK----------DLVERYIEVQALMLAPIAPHFAEYIY---REVLGREGS 895
                  679************************999998877.******854.333..........89************************...3566***** PP

  Anticodon_1 102 imlaewpekaeelekeleeeevellkeivkairklrselkikpss 146
                  +   ++p ++++ +     +++e+   + ++ r++r+ ++ + ++
   CCD24930.1 896 VQTTKFPRASKPIDHGV-LSSLEY---VRNVQRSIREGEGQALKK 936
                  *******8665554333.468888...555555555444444333 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.42   1.9e+03      79     110 ..     631     662 ..     616     667 .. 0.75
   2 !   27.7   0.0   3.5e-10   1.6e-06     207     283 ..     685     762 ..     678     780 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.42
                   HHHHHHHHHHHTT----SB--BGGGGHHHHHH CS
  tRNA-synt_1e  79 fieefkkdleaLnvlkptleprvsekvdeiie 110
                   f + f kd+  Ln++  +++  v +++ + ++
    CCD24930.1 631 FKDYFGKDIGPLNIKAEQMTDEVFDYIFQHVD 662
                   4455679*************999999977666 PP

  == domain 2  score: 27.7 bits;  conditional E-value: 3.5e-10
                   SEEEEEEEGGGTTTHHHHHHHHHHHHSS.S--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS CS
  tRNA-synt_1e 207 eidihsGGiDLafPhhenelaqseaafd.kqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlRllllsa 283
                    +d+   G+DL+  h    +  + a+f  k + k    nghl++++ kmsks +nf+t++++++kf + + R++l+ a
    CCD24930.1 685 PLDVSISGKDLIPNHLTFFIYTHVALFPkKFWPKGIRANGHLMLNNAKMSKSTGNFMTLEQIVEKFGADASRIALADA 762
                   57899999***9999999999999**9955567788899*********************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1094 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 7336.57
//
Query:       CCD24931.1  [L=236]
Description: hypothetical protein NDAI_0E01150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.2   11.5   0.0       0.33   10.7   0.0    1.3  1  DUF2157   Predicted membrane protein (DUF2157)


Domain annotation for each model (and alignments):
>> DUF2157  Predicted membrane protein (DUF2157)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.9e-05      0.33      32      63 ..      10      41 ..       2      44 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.9e-05
     DUF2157 32 rsfleallvlGalllglGlilfvAanWqglsr 63
                +++ + l v+++ ll+lG+ +f +  W++ s+
  CCD24931.1 10 QKSKRNLRVISSALLLLGVTSFLYFTWNDYSE 41
                334688999*******************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       859  (0.0479112); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1834.37
//
Query:       CCD24932.1  [L=415]
Description: hypothetical protein NDAI_0E01160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-81  271.1   0.4    4.9e-72  242.3   0.0    2.1  2  DAGAT     Diacylglycerol acyltransferase


Domain annotation for each model (and alignments):
>> DAGAT  Diacylglycerol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   8.3e-11   1.5e-06       2      71 ..      76     147 ..      75     150 .. 0.84
   2 !  242.3   0.0   2.7e-76   4.9e-72      37     294 ..     153     411 ..     146     414 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 8.3e-11
       DAGAT   2 llfltklwlllvLyavwllydidspkkg..gyrsnwvrrlavlkyfaeYfPvkLvktaeletdrnYliGyhP 71 
                 ++  ++lw+ ++ y++++++d    + g  ++ s w+r l  +k +++YfP+ L kt +l+++    iG +P
  CCD24932.1  76 VISKPRLWVFVIPYMIYFFIDRSPANGGvvERYSLWFRSLPFWKAYCDYFPITLDKTCDLPPTFTKKIGNDP 147
                 5667899*************986555543346788**************************99888888877 PP

  == domain 2  score: 242.3 bits;  conditional E-value: 2.7e-76
       DAGAT  37 rrlavlkyfaeYfPvkLvktae....letd.rnYliGyhPhgilsvgafvalatdatgvkekfpgirfnlatLagqfrtpfrreillllGlievsresi 130
                 +rl++  + ++Y+ ++  k+a     +e++   Y++GyhPhgi ++gaf a++t++ + ++kfpgi + l+tL++qf++pf r++ll lG++ vs+++ 
  CCD24932.1 153 KRLRIKLWPTKYY-LNFEKKASamdnMEATgPRYIFGYHPHGIGALGAFGAIGTEGRDWSQKFPGIPVSLMTLVTQFHIPFYRDYLLALGVTSVSKKNS 250
                 5566666666665.3332222210014333157****************************************************************** PP

       DAGAT 131 eyvLdkeekGravvlvvGGaeealeahpgketltLkkrkGfvkialktGa.dLvPvysfGendvykqvenpkgsklrkvqeklkkvlglsppilyGrgl 228
                  ++L+k+++   + +vvGGa+e+l +  g   ++L+krkGf+k+a++tG  +LvPv++fGe + y+ ++++ +s+lrk+q ++k+  g++ pi+y rg+
  CCD24932.1 251 LKTLNKNQS---ICIVVGGARESLLSSMGSTEIILNKRKGFIKLAIETGNtSLVPVFAFGETNCYNILRTDDDSWLRKFQLWFKENCGFTIPIFYARGI 346
                 9*****999...*************************************637*********************************************** PP

       DAGAT 229 fnsltlGllPfrkpittvvGkPiev.tkteePtkeeidelhakYveaLaeLfeehkekfgvskdtkL 294
                 fn + +GllPfr p++++vGkPi v +k+e+P +e +d++h+ Y+e+L+ L+    ek+g   d++L
  CCD24932.1 347 FN-YDFGLLPFRTPLNVIVGKPIYVkEKIENPPTEVVDHYHNLYIEELKRLYYANNEKYGF-GDEDL 411
                 **.88********************5589******************************95.44555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       509  (0.0283898); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3173.98
//
Query:       CCD24933.1  [L=471]
Description: hypothetical protein NDAI_0E01170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-81  272.4   0.2    2.2e-81  271.8   0.2    1.3  1  MOZ_SAS         MOZ/SAS family
    2.7e-21   74.9   0.2    8.1e-21   73.4   0.2    1.9  1  zf-MYST         MYST family zinc finger domain
    2.2e-20   72.3   0.6    4.5e-20   71.3   0.6    1.6  1  Tudor-knot      RNA binding activity-knot of a chromodomain
     0.0014   19.0   0.0     0.0037   17.6   0.0    1.7  1  Acetyltransf_7  Acetyltransferase (GNAT) domain
     0.0042   17.3   0.0       0.04   14.2   0.0    2.3  2  Acetyltransf_1  Acetyltransferase (GNAT) family


Domain annotation for each model (and alignments):
>> MOZ_SAS  MOZ/SAS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.8   0.2   6.3e-85   2.2e-81       1     178 [.     225     401 ..     225     402 .. 0.98

  Alignments for each domain:
  == domain 1  score: 271.8 bits;  conditional E-value: 6.3e-85
     MOZ_SAS   1 ppGkeiYrkeklsvfevdGekeklycqnLcllaklFldhktlyydvepFlfYvlteadeegahivGyFskekesaeeynlaCilvlPpyqrkgyGklli 99 
                 ppG+eiYr++ +s+fe+dG+k++++c+nLcll+klFldhktlyydv+pFlfY++t++de g+h+vGyFskekesa++yn+aCil+lP+yqr gyG+lli
  CCD24933.1 225 PPGNEIYRDDYVSFFEIDGRKQRTWCRNLCLLSKLFLDHKTLYYDVDPFLFYCMTRRDELGHHFVGYFSKEKESADGYNVACILTLPQYQRMGYGRLLI 323
                 8************************************************************************************************** PP

     MOZ_SAS 100 efsYeLskrekkigtPekPlsdlgllsyrsywkeeilellkekekkkisieeisektgikeeDiistleelkllkyakg 178
                 efsYeLsk+e+k+g+PekPlsdlgllsyr+yw++++l ll e + ++i+ieeis+ t+++++Di++t ++l++l+y+k 
  CCD24933.1 324 EFSYELSKKEHKVGSPEKPLSDLGLLSYRAYWADTLLVLLVE-HGQEITIEEISSITSMTTTDILHTAKTLNILRYYKA 401
                 *************************************99987.6799*****************************996 PP

>> zf-MYST  MYST family zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.2   2.3e-24   8.1e-21       1      55 []     166     220 ..     166     220 .. 0.99

  Alignments for each domain:
  == domain 1  score: 73.4 bits;  conditional E-value: 2.3e-24
     zf-MYST   1 vkniekieiGeyeiktWYfSpYPeelankekLyvCefClkYmksakelerHkkkC 55 
                 v+n++ki +Ge+ei++WYfSpYP el++++ +y+ +f l+Y+ s+k++er++kkC
  CCD24933.1 166 VRNLNKIIMGEHEIEPWYFSPYPIELTDEDVVYIDDFSLQYFGSRKQYERYRKKC 220
                 89***************************************************** PP

>> Tudor-knot  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.6   1.3e-23   4.5e-20       3      55 .]      23      74 ..      21      74 .. 0.96

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 1.3e-23
                TTTEEEEEETTSCEEEEEEEEEEETSSCEEEEEEETTS-CCC-EEEETTTEES CS
  Tudor-knot  3 vgckvlvrkkdgelrkAeilsirekkgkyeYYVHYeefNkRlDeWVsaeridl 55
                ++c+++v+k d+ +r+Aeilsi+++++++++YVHY+++NkRlDeW++ +ri+l
  CCD24933.1 23 TKCQCWVKK-DDDERLAEILSINTRRSPPKFYVHYVNYNKRLDEWIDVDRINL 74
                689****99.*****************************************85 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     1e-06    0.0037      15      49 ..     289     328 ..     271     355 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1e-06
                     EEEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH..T CS
  Acetyltransf_7  15 vGfialslld...aeitrlaVdpeyrgkGiGraLlea..a 49 
                     vG+ + + ++   ++  ++ ++p+y++ G+Gr L+e+  +
      CCD24933.1 289 VGYFSKEKESadgYNVACILTLPQYQRMGYGRLLIEFsyE 328
                     55444333334433444499****************8431 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.28     1e+03       5      55 ..      19      48 ..       6      66 .. 0.56
   2 !   14.2   0.0   1.1e-05      0.04      44      92 ..     288     333 ..     239     339 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.28
                    HHHHHHHTHHHHHHHHHHHHHHHHHSTTCEEEE.EEETTEEEEEEEEEEEET CS
  Acetyltransf_1  5 vellvesffppnedaseeefeesfsleaegllv.aeedgeliGfisllkipd 55
                     e+                       + + ++v   +d++l+  +s++ +  
      CCD24933.1 19 QEI-------------------M---TKCQCWVkKDDDERLAEILSINTRRS 48
                    333...................3...55566663444455666555555555 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1.1e-05
                     EEEEEEEEEEETTSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT CS
  Acetyltransf_1  44 liGfisllkipdekggvayieslaVspeyrgkGlGsaLlealeeraree 92 
                      +G+     +  e+ + + +  +   p+y+++G+G++L+e   e  ++e
      CCD24933.1 288 FVGYF---SKEKESADGYNVACILTLPQYQRMGYGRLLIEFSYELSKKE 333
                     44444...3333456888889999****************998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       710  (0.0396006); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3478.52
//
Query:       CCD24934.1  [L=673]
Description: hypothetical protein NDAI_0E01180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-75  252.8   0.6      1e-69  235.4   0.3    3.1  2  TruD      tRNA pseudouridine synthase D (TruD)


Domain annotation for each model (and alignments):
>> TruD  tRNA pseudouridine synthase D (TruD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0     4e-06     0.072       2      35 ..      41      75 ..      40      86 .. 0.76
   2 !  235.4   0.3   5.6e-74     1e-69      42     415 ..     215     656 ..     196     657 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4e-06
        TruD  2 lgielyvt.dtegigGrlrespeDFiVeEieefsg 35
                +gi l+++   +g+ G++++++ DF+V+Ei+++++
  CCD24934.1 41 VGITLFLSsGLPGFSGQIKQRYTDFLVNEINKADE 75
                566666541589******************87744 PP

  == domain 2  score: 235.4 bits;  conditional E-value: 5.6e-74
        TruD  42 geylvlrvekrnwdtldlvrelaralgisrkrvgfaGtKDkrAvTtQlisirkvepeeleal..eikdvelevvgrarrklrlGdLaGNkFeirvrdv. 137
                  e+l ++++k+n dt+++v+++++ ++i +k ++faG KD+rAvT Q +s++k+  ++l+al  ++k++ +     ++ +l+lGdL GN+F i++rdv 
  CCD24934.1 215 KEFLHFTLHKENKDTMEAVNTITKLMRIPNKLIRFAGNKDRRAVTCQRLSVSKIGVDRLNALnrTLKGLVIGGYKFEDTSLSLGDLNGNEFVIVIRDVs 313
                 57799*************************************************999999998899********************************6 PP

        TruD 138 aeee...eaakraeeileeleekggvPNyfGvQRFGsrrpvthlvGkaivkgdleeAvelyvgkpfeeesedtreareavaetgdleealeelpkslry 233
                  +e    ++++ +++  ++l+ekg + NyfG+QRFG+    th++Gk+++  ++e+Av+l+++++ +  + +++ear++ aet+d   al+++p++   
  CCD24934.1 314 VSETsalSLEQILANGCQSLSEKG-FINYFGMQRFGTFSISTHEIGKELLLSNWENAVNLILSDQDNVLP-KSKEARQIWAETKDPVLALQKMPRQSLA 410
                 544434434445555556778877.**********************************99998876665.569************************* PP

        TruD 234 ErallkrLae.........kpkdykkAlealpknLqrlFvhAyqSylFNrvlseRlerglpldepveGDvvifaeer............lpdtdrlqlv 311
                 E ++l++L +         ++ +y  A+ ++p+nL+ ++vhAyqS+++N + s+R+e      e veGD+vi++e++              d ++ +++
  CCD24934.1 411 ENSILHSLSTqkkeedgtfSSFAYYTAIMKIPRNLRTMYVHAYQSFVWNAIASKRIELH--GVELVEGDLVIDTENTkspsaqdeeddfDEDLREDEFI 507
                 *********9776666655555699********************************65..579**********9999999988877665566666677 PP

        TruD 312 teknveevkrliergraf...vtaplvGtetela.egevgeierevleeegleledFklpklpelsskGtrRaillrve.................... 386
                 ++k v +++  i++g+++   v++p +G +   + ++e +++  e+++++++++ d +  k+ e+s++G++R+i+ ++e                    
  CCD24934.1 508 RAKPVTQAD--IDSGKFSitdVVLPTPGFDIIYPtNEELRKLYTEIMAKDNMDPFDMR-RKVREFSMAGSYRKIIEKPEqldyrivhyssptqqlvntd 603
                 777776666..566655511367899***987651667899************99998.5579****************99999999999999999999 PP

        TruD 387 ..........................dlelsaeedeltleFsLpkGsYATvvlrE 415
                                           d     +++ ++l+F+L    YAT+ lrE
  CCD24934.1 604 leilnnqvakdncqkymkdkleryipD--KGGDKTAVILKFQLGTSAYATMALRE 656
                 999999999988888887776544321..22334448899999999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1034  (0.0576719); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.25s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4602.18
//
Query:       CCD24935.1  [L=358]
Description: hypothetical protein NDAI_0E01190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       385  (0.0214736); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2789.90
//
Query:       CCD24936.1  [L=490]
Description: hypothetical protein NDAI_0E01200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.4e-06   27.7   0.9    0.00021   21.3   0.0    3.0  3  Mur_ligase_M  Mur ligase middle domain
     0.0039   17.4   0.0      0.013   15.7   0.0    1.9  2  Mur_ligase_C  Mur ligase family, glutamate ligase domain
  ------ inclusion threshold ------
        0.1   12.7   0.0       0.44   10.7   0.0    2.0  2  NRN1          Neuritin protein family


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.6e-08   0.00021       1     107 [.      71     232 ..      71     251 .. 0.89
   2 !    3.6   0.0    0.0099        59     153     191 ..     249     289 ..     233     290 .. 0.79
   3 ?   -1.2   0.0      0.28   1.7e+03      95     117 ..     365     387 ..     356     432 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 3.6e-08
                   EESSS-HHHHHHHHHHHHHCTEEEEETTC........................................................SS-THHHHHHHH CS
  Mur_ligase_M   1 vTGtnGKTTtteliaailekagkvigtvg........................................................ttnneiglpktl 41 
                   +TGt+GK +t+ ++ +il++   ++  +g                                                         + + ++l ++ 
    CCD24936.1  71 ITGTKGKGSTAAFTSSILRQYNDKLPKIGlytsphlktvreriringepisedkftkyffevwnklgntksnlekfphmvdgskpGYFKYLTLLSFH 167
                   8*****************9995555555556677899999*********************************************99********** PP

                   HHHHHTT-SEEEEE--HCHHHC.TTTCCHCBESEEEE---TSTTHHHH.SSHHHHHHHHHHHHHTSET CS
  Mur_ligase_M  42 aemekkeaeyavlEvsshglge.krlegllkpdvavitnispdHldfh.gtlenyaeaKaelferlke 107
                   a m++ +++++v Ev+    ge +  + + kp v  +t ++ dH   + +t+ ++a  K  +f++ ++
    CCD24936.1 168 AFMQE-GCDACVYEVGVG--GEfDSTNIIEKPLVCGVTLLGIDHTFMLgETIAEIAWNKGGIFKEGSP 232
                   *****.************..66455555579**************988789************87654 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.0099
                   EETTEEEEEEEEE.TTEEEE.EEESSCSCHHHHHHHHHHHH CS
  Mur_ligase_M 153 eksegteiellev.kggele.ieipllGkhnvyNalaaiaa 191
                   e +++ + +l++v  ++ l+ ++++++G+++  Na +a+++
    CCD24936.1 249 ERATERSTKLTQVpTFKALKnVKLGIAGEFQRGNASLAVVL 289
                   445555556677767788888***************99987 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.28
                   HHHHHHHHHTSETTCEEEEETTS CS
  Mur_ligase_M  95 aeaKaelferlkeegiavinadd 117
                   ++ K  lf++++ ++ a+in   
    CCD24936.1 365 FNKKILLFNQQSRDANALINYLH 387
                   46677788777777777777543 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.36   2.1e+03       8      36 ..     297     325 ..     294     328 .. 0.78
   2 !   15.7   0.0   2.2e-06     0.013       1      58 [.     325     379 ..     325     405 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.36
                   EEETTTEEEEEET--SHHHHHHHHHHHHH CS
  Mur_ligase_C   8 vgeadgvtvidDyahnpdslsaalkalre 36 
                   ++  d++  +   ah p ++ ++l++ r+
    CCD24936.1 297 LNVIDKTIAVEEDAHIPSEALKGLELTRW 325
                   5555666677779***********99987 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 2.2e-06
                   CTTSSEEEEETTTEEEEEET--SHHHHHHHHHHHHHHSS..SSEEEEEEEESTT.CCSCH CS
  Mur_ligase_C   1 vkgRlevvgeadgvtvidDyahnpdslsaalkalreiap..dkrlilvfgpggelgertr 58 
                   ++gR + + + +g  +++D ah+ ds+ aa   +++i++   +++il+f +     +r++
    CCD24936.1 325 WEGRCQTIER-NGSNWYIDGAHTKDSIIAASGWFKNIVKssFNKKILLFNQ--Q--SRDA 379
                   689******9.789***********************99997888888875..2..2444 PP

>> NRN1  Neuritin protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.63   3.8e+03      55      75 ..      40      59 ..      19      64 .. 0.73
   2 ?   10.7   0.0   7.4e-05      0.44      19      79 ..     419     479 ..     414     483 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.63
        NRN1 55 qeeaaaiWesLrkeskklkfq 75
                +++ ++iWe+ ++ sk++ ++
  CCD24936.1 40 RRNQMNIWEM-QEWSKRIGYN 59
                5667889986.5667777765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 7.4e-05
        NRN1  19 laeykeeedeeeqeletickyWdefhaCa.ltaladCqeeaaaiWesLrkeskklkfqGsLf 79 
                 ++++k++  e+ +  e+++k W+   +    + ++   eea+++ esLr++s  +  +GsL+
  CCD24936.1 419 MNTSKDDV-EKLKIQEALRKEWNRIDKHRpEVHVTPTIEEAVSLIESLRQDSLDIFVTGSLH 479
                 44444443.334666788999*9997765155678889**********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3673.76
//
Query:       CCD24937.1  [L=414]
Description: hypothetical protein NDAI_0E01210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-14   53.4   0.1    2.5e-13   50.6   0.0    2.4  2  Methyltransf_12  Methyltransferase domain
    3.6e-12   46.4   0.0    5.6e-12   45.8   0.0    1.3  1  Methyltransf_23  Methyltransferase domain
    2.5e-10   40.9   0.0    9.4e-10   39.1   0.0    2.0  2  Methyltransf_25  Methyltransferase domain
    1.5e-07   31.9   0.0    3.5e-07   30.8   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    1.6e-05   24.7   0.1    6.3e-05   22.8   0.0    2.0  3  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.021   14.0   0.0          3    6.9   0.0    2.4  2  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family
       0.18   11.8   0.0       0.44   10.5   0.0    1.7  1  Methyltransf_32  Methyltransferase domain
        2.2    9.4   5.2         18    6.4   0.0    2.8  3  DUF3298          Protein of unknown function (DUF3298)


Domain annotation for each model (and alignments):
>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.5   3.3e+03      30      49 ..     149     168 ..     132     197 .. 0.61
   2 !   50.6   0.0   1.1e-16   2.5e-13       2      99 .]     223     327 ..     222     327 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.5
  Methyltransf_12  30 psaiedakeklakrennnnn 49 
                      +++i+ a+ek++++ +n + 
       CCD24937.1 149 EEQIQEAQEKIKEQMKNPVP 168
                      45555566666655544333 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 1.1e-16
  Methyltransf_12   2 eiGcGtGsllrallekl..pdieytgvDispsaiedakeklakren.nnnnnvelealdlldldgg..ssfDlvvasnvlhhl..kdirevldn 88 
                      eiGcG G++ +++l+++  +d+++++ D+ p+a+e  k+  ++ ++  ++++++l +++    dg    s+D+ v+++v+++l  +++++++dn
       CCD24937.1 223 EIGCGAGNTFFPILNDNenEDLKIVAADFAPKAVELVKNSENFDSKyGHATVWDLANTEGTLPDGIepRSVDIAVMIFVFSALspAQWEQAMDN 316
                      9*********************************5554444443330455666666666554444488************************** PP

  Methyltransf_12  89 irklLkpgGrl 99 
                      ++  +kpgG++
       CCD24937.1 317 LHMIMKPGGKI 327
                      *********86 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   2.5e-15   5.6e-12      25     155 ..     220     373 ..     151     376 .. 0.78

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 2.5e-15
  Methyltransf_23  25 rvLdiGcGtG.illevlrengf...svtgvDlspeaveiaekakkaqkdqfdeqeaaepqg............kfdlIvlrevlehvpd..ppe 100
                       + +iGcG G ++ ++l +n     ++++ D  p+ave+++  + ++++++     ++ ++            + d++v+++v+  + +  ++ 
       CCD24937.1 220 TIFEIGCGAGnTFFPILNDNENedlKIVAADFAPKAVELVK-NSENFDSKYGHATVWDLANtegtlpdgieprSVDIAVMIFVFSALSPaqWEQ 312
                      778*******889****66532235*************984.2222222222222233222344556667777***************555*** PP

  Methyltransf_23 101 llrqiatllkpgGylllseplasl......kedrllldwlylvpagrhisffsarslkell 155
                      ++++++ ++kpgG +ll++++  +      k +rll+++ y + +g+ ++ffs++ l+e +
       CCD24937.1 313 AMDNLHMIMKPGGKILLRDYGHLDlaqvrfKKNRLLDENFYVRGDGTRVYFFSEDKLREVF 373
                      *******************987666677766777777788888888***********9987 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.7   8.2e+03      28      44 ..     146     162 ..     136     172 .. 0.76
   2 !   39.1   0.0   4.2e-13   9.4e-10       1      97 []     221     325 ..     221     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.7
                      ESSHHHHHHHHHHHHHT CS
  Methyltransf_25  28 Diseemleaareraeee 44 
                      +  ee++++a+e+++e+
       CCD24937.1 146 EWGEEQIQEAQEKIKEQ 162
                      55678899999998765 PP

  == domain 2  score: 39.1 bits;  conditional E-value: 4.2e-13
                      EEEET-TTSHHHHHHHCTS.T.SSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBCCG....BS..SSTTTEEEEEEESTGGGSSHHHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrl.g.kakvtgvDiseemleaareraeeeglnvefvqgdaed....lp..fedgsfDlvvssgalhhlsdedlekal 86 
                      + ++GcG G++ + +++   + + k+++ D++++++e +++  + ++   +  + d+ +    lp   e +s+D+ v++++++ ls++++e+a+
       CCD24937.1 221 IFEIGCGAGNTFFPILNDNeNeDLKIVAADFAPKAVELVKNSENFDSKYGHATVWDLANtegtLPdgIEPRSVDIAVMIFVFSALSPAQWEQAM 314
                      689*************9986369***************997664433333334444433112356445999*********************** PP

                      HHHHHHEEEEE CS
  Methyltransf_25  87 keiarvLkpgG 97 
                      ++++ ++kpgG
       CCD24937.1 315 DNLHMIMKPGG 325
                      **********9 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.6e-10   3.5e-07       2      95 ..     223     328 ..     222     329 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.6e-10
                      EET-TTSHHHHHHHHTT....SEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECC.CTS..S-TT-EEEEEEES-CCC-..CCHHHHHHH CS
  Methyltransf_11   2 dvGcGtGrlaealakrg....arvvgvDlskemlklakekaseegl...kvefvvadae.klp..fednsfDlvvssevlhhv..edpekalke 83 
                      ++GcG+G  + ++ +       ++v+ D+++++++l+k+  + +        +  a+ e +lp  +e  s+D+ v+ +v+  +  +++e+a+++
       CCD24937.1 223 EIGCGAGNTFFPILNDNenedLKIVAADFAPKAVELVKNSENFDSKyghATVWDLANTEgTLPdgIEPRSVDIAVMIFVFSALspAQWEQAMDN 316
                      79********999944446789************99988877777677744556666663466668888**************999******** PP

                      HHHHEEEEEEEE CS
  Methyltransf_11  84 iaRvLkpgGllv 95 
                      ++ ++kpgG+++
       CCD24937.1 317 LHMIMKPGGKIL 328
                      *********986 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.2   2.7e+03     113     127 ..      64      77 ..       8     106 .. 0.51
   2 ?   -3.0   0.0       2.4   5.4e+03      35      49 ..     146     160 ..     137     167 .. 0.69
   3 !   22.8   0.0   2.8e-08   6.3e-05       4     115 ..     218     335 ..     215     376 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.2
  Methyltransf_31 113 rllaelpakveeesk 127
                      +  +el a  ++  +
       CCD24937.1  64 N-KEELEALTQDVKE 77 
                      2.2222222222222 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.4
  Methyltransf_31  35 DiseeaielArenaq 49 
                      +  ee i+ A+e+ +
       CCD24937.1 146 EWGEEQIQEAQEKIK 160
                      455777777777554 PP

  == domain 3  score: 22.8 bits;  conditional E-value: 2.8e-08
  Methyltransf_31   4 glrvlDlGCGtGeltfelae.elgpkaevvGiDiseeaielAre..naqklgldnveFeqgdiee.lekl.ledekfDlilsnevl..naladp 90 
                       +++ ++GCG+G+  f +   + +++ ++v  D+ ++a+el ++  n +++         ++ e  l+ + +e++++D+ +   v+     a  
       CCD24937.1 218 PVTIFEIGCGAGNTFFPILNdNENEDLKIVAADFAPKAVELVKNseNFDSKYGHATVWDLANTEGtLP-DgIEPRSVDIAVMIFVFsaLSPAQW 310
                      578999*******999877669999*****************99655555544455566688888788.55888*****555544442366777 PP

  Methyltransf_31  91 dkileeiervlkpggilliedprll 115
                      ++++ +++  +kpgg +l++d+ +l
       CCD24937.1 311 EQAMDNLHMIMKPGGKILLRDYGHL 335
                      99******************99833 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0014         3      17      97 ..     178     261 ..     162     289 .. 0.75
   2 ?    4.6   0.0    0.0071        16     156     198 ..     290     330 ..     284     347 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0014
                     -HHHHHHHHCSTTTTSTC.CCCHHHHHHHHHHHHHHTSSS-ECEEEEE..T-TT--GGGTTGGGTEC.EEEEEESSHHHHHHHHH CS
  NNMT_PNMT_TEMT  17 epraYLekyykkasedaa.eeqvvlfaLknllqtlatgekkgdtllDi..GaGPTvyqllsarevak.eitlsDyldqNrdeLek 97 
                     +p  Y + +yk ++e+   +++ ++   + l++  +++     t+ +i  GaG T + +l   e+   +i+ +D++++  +  ++
      CCD24937.1 178 NPARYWDIFYKNNKENFFkDRKWLQIEFPILYASTRKDSG-PVTIFEIgcGAGNTFFPILNDNENEDlKIVAADFAPKAVELVKN 261
                     8999************9945569999*****999996655.4566555227899***99998876544899******98765544 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0071
                     S..EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE CS
  NNMT_PNMT_TEMT 156 pkkadvvvtifcleaacedleeylralrnlasllkpGGhlvlg 198
                     p+ +d+ v if + a ++  +++ +a++nl   +kpGG ++l 
      CCD24937.1 290 PRSVDIAVMIFVFSALSP--AQWEQAMDNLHMIMKPGGKILLR 330
                     566899999999988877..6899**************99875 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0002      0.44      18      92 ..     210     287 ..     202     342 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0002
  Methyltransf_32  18 kelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakee...lvekaekraeklgkkfnkrlsfaelsieea 92 
                      ++++k+sg++t+ ++G+G g   f +  ++++  lk+v+ d   +   lv+++e+ ++k+g++   +l  +e++  + 
       CCD24937.1 210 ASTRKDSGPVTIFEIGCGAGNTFFPILNDNENEDLKIVAADFAPKaveLVKNSENFDSKYGHATVWDLANTEGTLPDG 287
                      45678999*************8886555355569*******9986111556777777777766555555555555555 PP

>> DUF3298  Protein of unknown function (DUF3298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       7.9   1.8e+04      14      14 ..      83      83 ..      62     114 .. 0.45
   2 ?    3.3   1.6     0.075   1.7e+02      12      53 ..     153     195 ..     143     206 .. 0.58
   3 ?    6.4   0.0    0.0082        18      40      63 ..     332     363 ..     294     369 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.9
                H CS
     DUF3298 14 l 14
                l
  CCD24937.1 83 L 83
                2 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.075
                 HHHHHHHHHHHHHHTCH-TTS-HCCCCTT.....TTTSS-TTTSSEE CS
     DUF3298  12 qrlakiikeqikkenekqqedeyaglper.....rdkedilgyqnfy 53 
                 q+     +e+ik++++++ +d ++ l ++     +d  + ++++nf+
  CCD24937.1 153 QE----AQEKIKEQMKNPVPDFDKNLYNSnparyWDIFYKNNKENFF 195
                 34....44555555544443333333333555587777778888775 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0082
                 T........TTTSS-TTTSSEEEETTEEEEEE CS
     DUF3298  40 r........rdkedilgyqnfyltddglviyf 63 
                          r+k++ l ++nfy+  dg  +yf
  CCD24937.1 332 YghldlaqvRFKKNRLLDENFYVRGDGTRVYF 363
                 05555555678999999***********6666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      585  (0.0326287); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3038.20
//
Query:       CCD24938.1  [L=269]
Description: hypothetical protein NDAI_0E01220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2099.28
//
Query:       CCD24939.1  [L=287]
Description: hypothetical protein NDAI_0E01230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-95  318.9   0.0      3e-95  318.7   0.0    1.0  1  DUF1749          Protein of unknown function (DUF1749)
    9.2e-07   28.4   0.0    2.2e-05   23.8   0.0    2.2  2  Hydrolase_4      Serine aminopeptidase, S33
    8.4e-05   22.3   0.0      0.003   17.3   0.0    2.4  3  Abhydrolase_1    alpha/beta hydrolase fold
    0.00011   21.8   0.0    0.00032   20.2   0.0    1.7  2  Peptidase_S9     Prolyl oligopeptidase family
    0.00014   22.6   0.0    0.00019   22.1   0.0    1.1  1  Abhydrolase_6    Alpha/beta hydrolase family
     0.0048   16.5   0.3      0.022   14.3   0.1    1.9  2  LIDHydrolase     Lipid-droplet associated hydrolase
     0.0087   14.8   0.0      0.012   14.3   0.0    1.2  1  Ndr              Ndr family
  ------ inclusion threshold ------
       0.05   13.3   0.0      0.083   12.5   0.0    1.5  1  Esterase         Putative esterase
      0.064   12.8   0.0        1.5    8.3   0.0    2.1  2  DLH              Dienelactone hydrolase family
      0.071   12.9   0.0       0.11   12.3   0.0    1.3  1  Abhydrolase_2    Phospholipase/Carboxylesterase
      0.074   13.0   0.0       0.12   12.3   0.0    1.4  1  SPA              Stabilization of polarity axis
        0.1   12.1   0.2       0.29   10.6   0.0    1.7  2  DUF900           Alpha/beta hydrolase of unknown function (DU
       0.11   12.4   0.0       0.17   11.8   0.0    1.3  1  AbiH             Bacteriophage abortive infection AbiH
       0.15   12.0   0.0       0.32   10.9   0.0    1.6  1  Lipase_3         Lipase (class 3)
       0.16   10.9   0.0       0.21   10.4   0.0    1.1  1  Chlorophyllase2  Chlorophyllase enzyme


Domain annotation for each model (and alignments):
>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.7   0.0   2.5e-98     3e-95       8     297 ..       5     281 ..       1     283 [. 0.96

  Alignments for each domain:
  == domain 1  score: 318.7 bits;  conditional E-value: 2.5e-98
     DUF1749   8 gllheyaerlvafeyetsgelkskallFigGLgdGlltvpyvkelanaldeagwsvvelqlsssyggwGtgsLkrDaeeieklveYlkktksGeekkek 106
                 g+lh+y + +vafe++++    +++l+ igG++dGl tvpyv +l + +++ g+sv+++q+sss+ g+G++sL++D +ei++lv+Ylk +k+G  ++ek
  CCD24939.1   5 GTLHQYDSTHVAFEFTPTD--MKNVLIMIGGMTDGLATVPYVTKLPQVMEPLGYSVINIQMSSSFKGFGISSLDKDIKEIKELVKYLKSEKGG--SREK 99 
                 99**************999..59*******************************************************************999..99** PP

     DUF1749 107 vvlmGHstGsqdvlyYltssnerdrekvdgailqapvsDReailkvleerkklkelvalakklvdkgkaeeilprelaekvgletpvsarRflsLasvd 205
                 +++mGHstG+qdv+++l +     ++ vd++ilq++ sDRe     ++  k lkel+++a ++v++gk++e+l +++++++  +tp++a+R++sL + +
  CCD24939.1 100 IIIMGHSTGAQDVMHFLLHY----PDLVDAGILQGSCSDRESFDPSVDP-KILKELNQFALNMVKQGKGDELLGSQFSKHII-DTPITAYRWCSLFTRG 192
                 *******************9....679******************9998.9****************************999.**************** PP

     DUF1749 206 gdDDfFssDlsdeklektfGkvkepllillsekDefvpesvdkedllerwkeavkkkewseesGiipgAsHnveeesaeeaqkelvervlsf 297
                 gdDD+FssDl de ++ tfGk+++p+l+++s+kD+fvpesvdk +ll+rw+++ + k+ws++ Gi++gAsH ve+++ +    +l+++++sf
  CCD24939.1 193 GDDDYFSSDLDDETFKGTFGKIRKPFLVAYSGKDQFVPESVDKLALLKRWENVSDPKYWSKNTGIVEGASHFVEDHEPQL---QLFQMITSF 281
                 **************************************************************************888777...677777777 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.9e-08   2.2e-05      52     112 ..      72     134 ..      64     176 .. 0.79
   2 ?    2.5   0.0     0.062        74     188     210 ..     212     234 ..     205     270 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.9e-08
  Hydrolase_4  52 vpsfddyvdDlaafvekvkeehpel..plfllGhSmGGliallyllrypdkvaglilsaPalk 112
                  ++s+d+ ++ ++++v+ +k+e++++  +++++GhS+G+  ++++ll+ypd v++ il ++  +
   CCD24939.1  72 ISSLDKDIKEIKELVKYLKSEKGGSreKIIIMGHSTGAQDVMHFLLHYPDLVDAGILQGSCSD 134
                  678888899999*******99888889*****************************9998754 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.062
  Hydrolase_4 188 akitlPllllhGeaDkvvdpeas 210
                   ki+ P+l+ ++++D+ v+++  
   CCD24939.1 212 GKIRKPFLVAYSGKDQFVPESVD 234
                  68999*************98765 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.5   4.2e+03     206     226 ..      12      40 ..       6      47 .. 0.62
   2 !   17.3   0.0   2.5e-06     0.003      72     120 ..      97     142 ..      61     164 .. 0.76
   3 ?    2.4   0.0     0.086     1e+02     200     228 ..     210     233 ..     168     265 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.5
                    C........THHHHSEEEEEEETTCSSSC CS
  Abhydrolase_1 206 e........lknvlaptlvisgtsDplvp 226
                    +        +++++   ++i+g++D+l++
     CCD24939.1  12 SthvafeftPTDMKNVLIMIGGMTDGLAT 40 
                    44444444457788444557779998865 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.5e-06
                    TSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE......CSSCCHHHHHHHHH CS
  Abhydrolase_1  72 ddkltlvGhSmGGmialayaaeyperVkalvllga......idpaaslieaqrqq 120
                     +k++++GhS G + ++++++ yp+ V+a +l g+                ++  
     CCD24939.1  97 REKIIIMGHSTGAQDVMHFLLHYPDLVDAGILQGScsdresF---------DPSV 142
                    58999******************************5433332.........3333 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.086
                    HHHHHHCTHHHHSEEEEEEETTCSSSCH.H CS
  Abhydrolase_1 200 lllrlrelknvlaptlvisgtsDplvpp.k 228
                     ++++r+      p lv ++ +D+ vp+  
     CCD24939.1 210 TFGKIRK------PFLVAYSGKDQFVPEsV 233
                    3445555......*************9742 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.7e-07   0.00032      43     105 ..      77     139 ..      73     162 .. 0.92
   2 ?   -1.8   0.0       1.5   1.8e+03     180     206 ..     257     283 ..     210     285 .. 0.68

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.7e-07
                   HHHHHHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHH CS
  Peptidase_S9  43 nefdDfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlryd 105
                   ++++ + + +++l +e+  ++e+++i+G+S G + ++  l + pdl +a++ + +++d  ++d
    CCD24939.1  77 KDIKEIKELVKYLKSEKGGSREKIIIMGHSTGAQDVMHFLLHYPDLVDAGILQGSCSDRESFD 139
                   67889999*************************************************988876 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
                   EETTS-SSTTSSHHHHHHHHHHHHHHH CS
  Peptidase_S9 180 ifpdegHgvgkprakveelarllaFlk 206
                   i  ++ H v +++ + + ++ +++F+k
    CCD24939.1 257 IVEGASHFVEDHEPQLQLFQMITSFAK 283
                   556777777777777777777777776 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.6e-07   0.00019      36     214 ..      69     270 ..      52     276 .. 0.65

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.6e-07
                    TSTS-GGCS--HHHCHHHHHHHCCTT...TTSEEEEEETCHHHHHHH.HHHCC....EEEEES-........----TTT.......S----TTHHH CS
  Abhydrolase_6  36 GhGrsdpppldledladlaalldelaa.gggpvvlvGHSlGGalala.aapla..lvvgvlldppp......talpagl.......laaalellla 114
                    G+G  ++ + d  ++ +l+ +l ++++ ++ +++++GHS G+  +++ +++++  +++g+l  +++      +     +        ++al+++++
     CCD24939.1  69 GFG-ISSLDKDIKEIKELVKYLKSEKGgSREKIIIMGHSTGAQDVMHfLLHYPdlVDAGILQGSCSdresfdP---SVDpkilkelNQFALNMVKQ 160
                    555.45666677666777777777777888899**********888868888887777799999444432221...11133334445555555555 PP

                    HHHTT-C.CCCHCCHS-HSCCCCHHHCCCCHCHCCCGHHHHCCHHC....HTTCCHHTT-TTGCEEEC.TT-CHHHHCHHCCCH.STTEEET.... CS
  Abhydrolase_6 115 llallrl.lawlsreplprlfladedadaawrarlarlaallaglg....llpaaawadlpvpllvlg.geDplvprllerlla.qagarlp.... 199
                      + + l  ++++  +++ ++ a     ++w   ++r+ + + +      +     +  ++ p+lv + g+D+ vp+ +++l+  +   r++    
     CCD24939.1 161 GKGDELLgSQFSKHIIDT-PITA-----YRWCSLFTRGGDDDYFSSdlddETFKGTFGKIRKPFLVAYsGKDQFVPESVDKLALlK---RWEnvsd 247
                    555333335666432233.5555.....99999999999666644422233346688888888877536*******9999888652...3322334 PP

                    ........CE...SSS-HHHHSH CS
  Abhydrolase_6 200 ........vvlpgaGHlphleep 214
                             +++ga+H++ + ep
     CCD24939.1 248 pkywskntGIVEGASHFVEDHEP 270
                    57777888888899999987666 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.9e-05     0.022      60     107 ..      74     120 ..      54     132 .. 0.79
   2 ?   -0.4   0.0      0.55   6.6e+02     219     242 ..     212     234 ..     199     250 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
  LIDHydrolase  60 sLedQiehkedflkellekaksekdvklilvGHSvGaYialevlkrls 107
                   sL++ i+  ++++k+ l+++k  ++ k+i++GHS Ga  +++ l +++
    CCD24939.1  74 SLDKDIKEIKELVKY-LKSEKGGSREKIIIMGHSTGAQDVMHFLLHYP 120
                   677788887777777.5669999*************977777666555 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.55
  LIDHydrolase 219 kknkekalvfyfgkkDhWvpeetr 242
                    k  +  +++ ++ kD++vpe+  
    CCD24939.1 212 GKIRKP-FLVAYSGKDQFVPESVD 234
                   344444.7888999******9875 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     1e-05     0.012      75     174 ..      68     175 ..      60     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-05
                 TT-----HHHHHTTHHHHHHHHT-......--EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH..........TTTS-HHHH CS
         Ndr  75 edyqfpslddladqllavldhfkl......ksviglGvgaGAyilarfalkhperveglvLinitskaagwvewakeKlsskllkk...vgltdllkdl 164
                 +++ + sld+  ++++++++++k       +++i +G   GA  +++f l++p++v + +L   +s  +++  ++  K+ +  l++     + +   d 
  CCD24939.1  68 KGFGISSLDKDIKEIKELVKYLKSekggsrEKIIIMGHSTGAQDVMHFLLHYPDLVDAGILQGSCSDRESFDPSVDPKILK-ELNQfalNMVKQGKGDE 165
                 66777778877788888888887522222257****************************************999999995.44441113445566688 PP

                 HHHHHS-HHH CS
         Ndr 165 llahkFgkee 174
                 ll  +F+k+ 
  CCD24939.1 166 LLGSQFSKHI 175
                 8888888865 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   6.9e-05     0.083     100     140 ..      83     123 ..      80     201 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.9e-05
                 THHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTC CS
    Esterase 100 qeLlplldanfrtapdgravaGqSmGGlgALilalkhpdrF 140
                 +eL+ +l++++  ++++  ++G+S G+   ++  l++pd+ 
  CCD24939.1  83 KELVKYLKSEKGGSREKIIIMGHSTGAQDVMHFLLHYPDLV 123
                 79*************************************86 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0013       1.5      77     125 ..      78     126 ..      34     132 .. 0.83
   2 ?    2.3   0.0     0.087     1e+02     142     166 ..     213     236 ..     208     245 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0013
         DLH  77 kvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaev.pevdaa 125
                 ++ +++k  v+ylks +  s +k+ ++G   G++ ++ +  +  + vda 
  CCD24939.1  78 DI-KEIKELVKYLKSEKGGSREKIIIMGHSTGAQDVMHFLLHYpDLVDAG 126
                 33.345699************************99998877775677776 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.087
         DLH 142 kikapilalfgeeDefipadevekl 166
                 ki +p l+ + ++D+f+p + v+kl
  CCD24939.1 213 KIRKPFLVAYSGKDQFVPES-VDKL 236
                 7999*************987.5555 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   9.1e-05      0.11      83     138 ..      75     132 ..      47     150 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.1e-05
                    HHHHHHHHHHHHHH.HHHTT--GGGEEEEEETHHHHHHHHHHHT-SS--.SEEEEES- CS
  Abhydrolase_2  83 ikksaekleelida.elkkgipssriiigGFSqGaalalylaltlpkkl.ggivafsg 138
                     +k +++++el+++ + +kg  +++iii+G S Ga  +++  l +p  + +gi+  s+
     CCD24939.1  75 LDKDIKEIKELVKYlKSEKGGSREKIIIMGHSTGAQDVMHFLLHYPDLVdAGILQGSC 132
                    5678899******9456788****************9999999999855267766665 PP

>> SPA  Stabilization of polarity axis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0    0.0001      0.12      24      76 ..      96     149 ..      72     158 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
         SPA  24 tskriivlstkasadevsefvLalsnlisp.agdvlrgfknns.fPyvdlselda 76 
                  +++ii++++++ a++v++f L +  l+      + ++ +++s  P vd + l++
  CCD24939.1  96 SREKIIIMGHSTGAQDVMHFLLHYPDLVDAgI-LQGSCSDRESfDPSVDPKILKE 149
                 468*************************9731.2222223333346666555555 PP

>> DUF900  Alpha/beta hydrolase of unknown function (DUF900)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00024      0.29      78     112 ..      80     116 ..      73     120 .. 0.85
   2 ?   -1.9   0.0       1.6   1.9e+03     143     166 ..     198     227 ..     193     232 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
      DUF900  78 dalekllrylatkk..sakkihllaHSmGtwlvleal 112
                 +++++l++yl+ +k  s++ki ++ HS G + v++ l
  CCD24939.1  80 KEIKELVKYLKSEKggSREKIIIMGHSTGAQDVMHFL 116
                 68999******996336899***********999987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
      DUF900 143 fkkqle......slgkeskeltvyvsrdDr 166
                 f+++l+        gk +k++ v +s +D+
  CCD24939.1 198 FSSDLDdetfkgTFGKIRKPFLVAYSGKDQ 227
                 555555445455678888999999999996 PP

>> AbiH  Bacteriophage abortive infection AbiH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00014      0.17     198     247 ..      66     113 ..      26     116 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00014
        AbiH 198 eikklyqrtfknteellennksflksledreiekfiiyilGhSlgkvDkd 247
                 ++k +  +++ +  + ++++ ++lks +  + ek  i+i+GhS g  D  
  CCD24939.1  66 SFKGFGISSLDKDIKEIKELVKYLKSEKGGSREK--IIIMGHSTGAQDVM 113
                 5555555555555556666677999999977777..*********99965 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00027      0.32       2      76 ..       1     109 [.       1     113 [. 0.63

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00027
                 EEE----.------------EEE-HHHH-G...........TT-EEEHHHHHHHH.............................S-HHHHHHHHHHHHH CS
    Lipase_3   2 vafRGte.sakdwltdldfslteakellek...........eggkvhsgfleaye.............................eslreqvlkelkrll 59 
                 +af+Gt  + +++   ++f++t++k++l +                                                       sl +++ ke+k+l+
  CCD24939.1   1 MAFKGTLhQYDSTHVAFEFTPTDMKNVLIMiggmtdglatvP------------YvtklpqvmeplgysviniqmsssfkgfgiSSLDKDI-KEIKELV 86 
                 689999856677778899999999998887555544443330............2344445666666666667777777787764444444.3344443 PP

                 HHTT......-EEEEEEEETHHH CS
    Lipase_3  60 ekyp......eysivvtGHSLGg 76 
                 +  +        +i++ GHS G+
  CCD24939.1  87 KYLKsekggsREKIIIMGHSTGA 109
                 333333358779**********8 PP

>> Chlorophyllase2  Chlorophyllase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00018      0.21      18     112 ..      26     120 ..      14     161 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00018
  Chlorophyllase2  18 pvllflhGyl..llnslY.sqlLkhiashgfivvapqlyk.vaeadakeiksaakvlnWlakgLesvlpeevepdlsklalsgHSrGgktafal 107
                       vl++++G++  l +  Y ++l + +   g+ v+  q+++ +++     i+s  k ++ ++ +L + l++e     +k+ + gHS G++ +++ 
       CCD24939.1  26 NVLIMIGGMTdgLATVPYvTKLPQVMEPLGYSVINIQMSSsFKGF---GISSLDKDIKEIK-ELVKYLKSEKGGSREKIIIMGHSTGAQDVMHF 115
                      58999999988866666614555566679*******998844444...4555555555443.4555777899999**************99988 PP

  Chlorophyllase2 108 algka 112
                       l++ 
       CCD24939.1 116 LLHYP 120
                      88765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2051.24
//
Query:       CCD24940.1  [L=897]
Description: hypothetical protein NDAI_0E01240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-82  276.0   6.9      3e-82  276.0   6.9    1.8  2  ABC_membrane_2  ABC transporter transmembrane region 2
      3e-13   50.4   0.0    1.1e-12   48.6   0.0    2.0  1  ABC_tran        ABC transporter
    0.00069   19.1   0.5      0.027   13.9   0.5    2.4  1  SMC_N           RecF/RecN/SMC N terminal domain
  ------ inclusion threshold ------
      0.024   14.4   0.0       0.23   11.2   0.0    2.3  1  DEAD            DEAD/DEAH box helicase
        0.3   11.6   4.0        1.7    9.1   4.0    2.3  1  AAA_23          AAA domain


Domain annotation for each model (and alignments):
>> ABC_membrane_2  ABC transporter transmembrane region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.3      0.93   3.3e+03      17      77 ..      32      91 ..      24     104 .. 0.53
   2 !  276.0   6.9   8.4e-86     3e-82       1     268 [.     200     472 ..     200     473 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.93
  ABC_membrane_2 17 llvlllllvlrtllsvlvaqldgklvkalvaknvraFvlsllkfallavpasfvnsalkYl 77
                    ++++l  + l+t+++ l+  l + + +      +r+   ++l  +++++ +++  s  +Yl
      CCD24940.1 32 IGLQLSNVTLKTYINALIRHLWKLVSSKNTVTTPRKRRAQVLLLSIVLSSITT-ISGFSYL 91
                    55556666666666666666666665555555555555555544444443333.3444455 PP

  == domain 2  score: 276.0 bits;  conditional E-value: 8.4e-86
  ABC_membrane_2   1 LlkilipklkskeallllvlllllvlrtllsvlvaqldgklvkalvaknvraFvlsllkfallavpasfvnsalkYltqkLalafRkrLtkhlls 95 
                     L +ilip+++ k++++l++++++l++rt+ls++va+ldg++vk ++a++ r F+l+l++++ +a+pas++nsa+k l++kL+l+fR++Lt+++++
      CCD24940.1 200 LSRILIPNIFHKNSMILTLQIFFLIMRTWLSLFVARLDGQIVKDIIAGRGRRFLLDLAIWFSIALPASYTNSAIKLLQRKLSLNFRVNLTRYIHD 294
                     689******************************************************************************************** PP

  ABC_membrane_2  96 eYlknr.tyYkvsnlde....ridnpDqritqDvekFtsslssLlsglvkpildvilftfiLwslsgtlgllllllyvllatvilriigpplgkl 185
                     +Yl++r ++Yk+ + ++     i+n+D++i++D+++F+++++s++++++kpi+d+++f++ L +++gtlg++ ++l+++ ++ ilr+++pplgkl
      CCD24940.1 295 MYLDKRlAFYKLMFDSKanssVIKNIDNSISNDITRFSDATCSVFANIAKPIIDLVFFSVYLRDNLGTLGVAGIFLNYFTTGYILRRYTPPLGKL 389
                     ************9988888889************************************************************************* PP

  ABC_membrane_2 186 vaeeeklegefRylhsrlitnaEeIAFyrGeevEkkqlqrrfkslidnlrrilsrrlrlgiieafvlkYlasilgyvlvalpi 268
                     ++++++ +g+++++h +li+n+EeIAFy+G++vE++++++ ++ l+  + ++ +r++ ++++e+++lkY++s+lgyv+ ++pi
      CCD24940.1 390 TSASSAADGDYYSYHLNLINNNEEIAFYQGTTVERTKVKELYDILMIRMLNVSKRKFNYNMLEDYILKYTWSGLGYVFASIPI 472
                     *********************************************************************************98 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   3.1e-16   1.1e-12      10     137 .]     664     804 ..     656     804 .. 0.81

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 3.1e-16
                 TTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHHTCHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............esdeeiekalskl 92 
                  g+ + i+G+n +GK+++ +++a+      ++G +        +     ++++i ++pq p + +  t+r++               +d+ + ++l+++
  CCD24940.1 664 SGSSLLILGPNSSGKTSIQRIIAEIWPIynKNGLL--------S---VPSQENIFCIPQRPYFTSSGTLRDQiiypmssdeffdrgLKDSLLIQILKEV 751
                 688999****************9987533244444........3...67899********99999999*******987777776665555599999999 PP

                 TTGG.........TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  93 glke.........lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 +lk+           dtv+ + +  LSgG+kqr+  ar+l+ kp++++lDE+t+
  CCD24940.1 752 NLKYlmkrskgltYLDTVA-DWKDLLSGGEKQRINFARILFHKPRFIVLDEATN 804
                 9999666666654555554.44599***************************97 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.5   7.4e-06     0.027       8     217 ..     647     850 ..     642     853 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 7.4e-06
                 ESETTEECEEEEEET...TSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--.BTTCSSTTEEEE..EEEEEETTEESSSSSSCEEEE CS
                 xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   8 enFksyagktvilpf...sksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk.skekasvkkaev..eitfdnedkklkiekeevsis 100
                 ++Fk ++ +  ++pf   s s   i+GpN SGK+++   i  +    +++ l s   ++ i+   ++  +++++++  +i++  +++++  +  + s+ 
  CCD24940.1 647 QDFKQIN-DMSSIPFihgSGSSLLILGPNSSGKTSIQRIIAEIWPIYNKNGLLSVPSQENIFCiPQRPYFTSSGTLrdQIIYPMSSDEFFDRGLKDSLL 744
                 5677775.4444554111234457899999999998877766666556666766666666666567777777777744678888888888888888888 PP

                 EEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 101 rrvkrkgeseykingkevtkkevsellesagiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislre 199
                  ++ ++ + +y +++++         l ++   k+lLSgGek+ +  a +     +++  + +lDe   a+ +     + ++lk+ +  + fi is r 
  CCD24940.1 745 IQILKEVNLKYLMKRSKG-----LTYLDTVADWKDLLSGGEKQRINFARI----LFHKPRFIVLDEATNAISQDMEDYLFNILKKYR--FNFITISQRP 832
                 899998888888877655.....3456666666889******97665554....577778**************************9..9********* PP

                 HHCCC-SCEEEEEEEETT CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N 200 emlekadklvgvtkveng 217
                  +++  d l+ ++ +++g
  CCD24940.1 833 SLIKYHDLLLEISDHNDG 850
                 ****99999999887666 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.5e-05      0.23      98     149 ..     762     821 ..     653     831 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.5e-05
                 CSEEEEEHHHHHHHH...HCTSSH.....CTTEEEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxxxxxx...xxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 vdivvgtpgrlddll...stgkln.....lsqvrflVlDEadrlldqgfsdfinrilnql 149
                    ++ t   + dll   +++++n     +++ rf+VlDEa +  +q+++d + +il++ 
  CCD24940.1 762 GLTYLDTVADWKDLLsggEKQRINfarilFHKPRFIVLDEATNAISQDMEDYLFNILKKY 821
                 334556777888888777666777666668888******************999999876 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.0   0.00048       1.7       6      59 ..     648     707 ..     645     896 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00048
      AAA_23   6 nfrsfrd.qeidF...skgltlItGpNGaGKTTildAik..laLygetprlsrksgrgfe 59 
                  f++++d  +i F   s    lI GpN +GKT+i + i   +  y++ + ls  s+++++
  CCD24940.1 648 DFKQINDmSSIPFihgSGSSLLILGPNSSGKTSIQRIIAeiWPIYNKNGLLSVPSQENIF 707
                 577776634588887655678*************99987666677777777766644444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5958.97
//
Query:       CCD24941.1  [L=435]
Description: hypothetical protein NDAI_0E01250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-56  190.8   3.4    7.8e-54  182.9   3.4    2.0  1  Oxysterol_BP  Oxysterol-binding protein


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.9   3.4   4.3e-58   7.8e-54      10     357 ..      20     372 ..      10     386 .. 0.87

  Alignments for each domain:
  == domain 1  score: 182.9 bits;  conditional E-value: 4.3e-58
                   TT-BCCCS---GGGEEEEEHHHHHHHCCTTCHHHH.................HHHC.SSHHHHHHHHHHHHHHCCCGCT......STSSSEEE---T CS
  Oxysterol_BP  10 iGkDLskislPvffneplSlLqrlaedleyselLd.................kaakeddsleRlayVaaFalSsyasti......krrlkKPFNPlL 83 
                   +  D+s+++ P f+++p+Sl +  + + ey+el+                  k   e+ ++ R+++V+++++ +++s++      +++ kKP+NP+L
    CCD24941.1  20 FRGDISTLTAPPFILSPVSLSEFSQYWGEYPELFLepgfindenykshscgdKD-IESAEVARMLAVTKWFIFALKSQYtsrnesMGSEKKPLNPFL 115
                   567******************************997888888888887776422.355589***********9999999899999999********* PP

                   T-EEEEEETT......CEEEEEEEEEETTTTEEEEEEEE..CTEEEEEEEEEEEEE-SS.EEEEEE-SEEEEEEEEESEEEEEEE--EEEEE-TTTT CS
  Oxysterol_BP  84 GEtfelvred......kgfrfiaEQVsHhPpvsAfhaes..egweldgeikvkskflgk.slevkpeGtahlellkksgehYtwtkpttivhniivg 171
                   GE f  +++        ++ +++EQVsHhPp +Af + +  ++++l+g++++k  f  +  l v++ G+++ ++ + ++e+Y +t p ++v++i+++
    CCD24941.1 116 GELFVGKWKMdekpelGETVLLSEQVSHHPPKTAFTVFNdkNNVKLEGYSQIKATFSKTlTLGVRQYGHSIFSI-R-DNESYLITPPPLHVEGILMA 210
                   ********544788875668*****************998899*************9873689***********.5.8******************* PP

                   S-EEEEEEEEEEEETTT--EEEEEEE---SSS---SSEEEEEEEE......TTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT..-....BSX CS
  Oxysterol_BP 172 klwvelsgeveitnhstgdkakleFkkkglfsskksnkvegkvkd......kkkevlyeisGkwdeelyikkkktekkeeeedasek..s....kvk 256
                   +++ el g++ i+  stg  a+leF+ +g+fs +k+n++++++++      ++ke++y+isG+w++  ++ k+  ++ +e+ +++++  +    +vk
    CCD24941.1 211 SPFAELEGKSFIQ-ASTGMLAVLEFSGRGYFS-GKKNSFKARIYRsskdyhNNKEPMYTISGQWSGVSKMIKHGAQEPSESLFHDATkiKptylHVK 305
                   *************.68***************5.89*********7778898999************8888777777777777777774526689*** PP

                   XGCGSSTTBCCCCCCH-----...GGG--HHHHCCT---.TTGGS-TTBGGG-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT.----SSE CS
  Oxysterol_BP 257 ekeeqeefeseklWkasplpkaeeyygftkfavtlNeieekekslaptDsRlRpDqraleegdideAeeeKkrlEekQRerrkereekk.ewkpkwF 352
                   ++eeq+  es+k Wk                 v++                      a+  gd++   e K+ lEe+QR++rke+e+k+ +w+ +wF
    CCD24941.1 306 PIEEQHPLESRKAWKD----------------VAK----------------------AITIGDYKLIGETKSVLEERQRNMRKEEEAKGiDWERRWF 364
                   ****************................888......................99**************************877779****** PP

                   EEEE...T CS
  Oxysterol_BP 353 ekek...d 357
                   + ++   d
    CCD24941.1 365 KDVDyskD 372
                   99884321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       353  (0.0196888); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3110.44
//
Query:       CCD24942.1  [L=211]
Description: hypothetical protein NDAI_0E01260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-27   93.7   0.0    1.7e-26   92.9   0.0    1.4  2  DHFR_1    Dihydrofolate reductase


Domain annotation for each model (and alignments):
>> DHFR_1  Dihydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   9.3e-31   1.7e-26       3     132 ..      10     156 ..       8     179 .. 0.74
   2 ?   -3.3   0.0      0.36   6.5e+03     140     161 .]     189     210 ..     183     210 .. 0.76

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 9.3e-31
                 EEEEEEETT-EEEBTTB-SS--HHHHHHHHHHH.......TTCEEEEEHHHHHCC-...S--TTCEEEEE-S-TT---.......TTEEEESSHHHHC. CS
      DHFR_1   3 slivAvaengvIGkdnklpwhlpeDlkrFkklT.......tgkpvimGrkTfeslg..krpLpnrkniVltrnedlkv.......egvevvssleeal. 84 
                 s+++    +  IG +++lpw+l++++k+F+++T       + ++vimGrkT++s++  +rpLpnr n+V++r+ + +        ++   v+sl+ a+ 
  CCD24942.1  10 SIVACLLPEMGIGFQGSLPWRLSKEMKYFRQVTsltkdsqKKNAVIMGRKTWQSIParFRPLPNRLNVVISRSFESTLreendlpNKYFKVNSLKGAFe 108
                 56666777899********************9844333333689************8889************988544322222123337888888885 PP

                 ...CCCTTS....SEEEEEE-HHHHHHCGGG-SEEEEEEESS----SEE----- CS
      DHFR_1  85 ...alakee...keevfviGGaeiYkqalpladklylTeidaefegdtffpeid 132
                    a   +     e++++iGG+e+Y+q  +++d+  +T        +t++pe+d
  CCD24942.1 109 qlhA---QFgaeLERIYIIGGGEVYNQCYDMIDHWLITALTPV---ETVVPEMD 156
                 4432...22333589*******************999987633...44444443 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.36
                 EEEEE--CTTC-S-EEEEEEEE CS
      DHFR_1 140 ereehekdeknkyaytfvtyer 161
                 +++ h  d++++y+++++ y+r
  CCD24942.1 189 NEDGHFIDHEKGYEFEYTLYNR 210
                 5566677888999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1606.70
//
Query:       CCD24943.1  [L=170]
Description: hypothetical protein NDAI_0E01270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-17   62.4   0.3    5.7e-17   62.1   0.3    1.1  1  POC3_POC4  20S proteasome chaperone assembly proteins 3 and 4
    0.00014   22.0   0.0     0.0002   21.5   0.0    1.5  1  PAC4       Proteasome assembly chaperone 4


Domain annotation for each model (and alignments):
>> POC3_POC4  20S proteasome chaperone assembly proteins 3 and 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.3   6.4e-21   5.7e-17       1     142 [.       1     160 [.       1     162 [. 0.88

  Alignments for each domain:
  == domain 1  score: 62.1 bits;  conditional E-value: 6.4e-21
                 XXEEEEEEEC--------..--EEEEEEEECCESSSSCEEEEEECCB--EEEEEEEE..................EEEEEEEEES.....HHHHHHHH- CS
   POC3_POC4   1 Mivreiqktleseskslt..ssedvevaihalhfsnkiplqiringemdstyevsskgl...............llinyvyaidl.....eeesvsdkl 77 
                 M++r+i k++ s+s+s+    + +  ++i+  + snkip+++ ++   d   ++++++l                l  y+ya++      + ++  +++
  CCD24943.1   1 MSTRTIHKQIVSDSSSFIslPAIELITTIPTSQESNKIPISLIVSLGGDNFIDGNVSTLlenegnikridtqlgTLVSYYYALPRrtsrnKSDTSIQRD 99 
                 9************99998667778888888********************************************9********9999977444444457 PP

                 --EEEEEEES-TTHCCHHHHHHHHHHHHHCCCTS-EEEEEEECGCT-THHHHTTHCHHHHHHHHH CS
   POC3_POC4  78 sdvevvvllgnssdmkidivarqiaeLlnkkieppvlyvtissklwrgeedqdsdfekLmfvlec 142
                  +v  ++ll++s d++ di +rq+a L++kk+++p+ yv +s k  +g++ ++ +++ L  v +c
  CCD24943.1 100 PEVIGMPLLDTSYDTVADI-TRQLAILIVKKYHRPC-YVAWSLK--NGSDLSSLELNQLFIVKKC 160
                 788889*************.****************.*****99..6667777777777666666 PP

>> PAC4  Proteasome assembly chaperone 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.3e-08    0.0002      26      80 .]      68     140 ..      10     140 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.3e-08
        PAC4  26 s......plgslvvAmpsrtnkktptisTtLlgdgs..............deaserlAqrLArRlgkqvfvScnl 80 
                 +      +l s ++A+p+rt+ +++ + T++ +d++               +++++lA +++++++++++v+ +l
  CCD24943.1  68 RidtqlgTLVSYYYALPRRTS-RNK-SDTSIQRDPEvigmplldtsydtvADITRQLAILIVKKYHRPCYVAWSL 140
                 155555568899*********.434.68888888855888888888878888*******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       252  (0.0140554); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1263.15
//
Query:       CCD24944.1  [L=107]
Description: hypothetical protein NDAI_0E01280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-42  143.7   1.4    1.6e-42  143.5   1.4    1.0  1  Ribosomal_L35Ae  Ribosomal protein L35Ae
     0.0035   17.5   0.0          2    8.7   0.0    2.2  2  RimM             RimM N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L35Ae  Ribosomal protein L35Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   1.4   1.8e-46   1.6e-42       1      95 []       7     101 ..       7     101 .. 0.99

  Alignments for each domain:
  == domain 1  score: 143.5 bits;  conditional E-value: 1.8e-46
                      -EEEEEEEEEE--SSSSS-EEEEEEESS--SHHHHHCCTT-EE..EEE-......TTT-EEEEEEEEECTTTTEEEEEETT--SSS-TT-EEEE CS
  Ribosomal_L35Ae   1 LyvkavflgykrgkrnqrentaLlkiegvkskeeaefylGkrvayvykakkkkkgskvrviwGkvtrahGnsgvvrakFkknLppkaigarvrv 94 
                      Lyvk+++++y+r+k+  ++n++L+kiegv + +ea+fylGkrvayvy+a+k+++g+k+rv+wGk+tr+hGnsgvvrakF++nLp+k++ga+vr+
       CCD24944.1   7 LYVKGKHVSYQRSKSVNNPNVSLIKIEGVATPQEAQFYLGKRVAYVYRASKEVRGTKIRVMWGKITRSHGNSGVVRAKFRNNLPAKTFGASVRI 100
                      8********************************************************************************************9 PP

                      . CS
  Ribosomal_L35Ae  95 m 95 
                      +
       CCD24944.1 101 F 101
                      6 PP

>> RimM  RimM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00074       6.7      45      78 ..      14      49 ..       2      56 .. 0.74
   2 !    8.7   0.0   0.00022         2       2      28 ..      68      94 ..      67     104 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00074
                E-EEEEE.EE.TTEEEEEETT--SHHHHHTTTT-EE CS
        RimM 45 ltvesvr.vh.kkgvivklegvddrdaAealkgael 78
                ++ ++ + v+  +  ++k+egv + ++A+ + g ++
  CCD24944.1 14 VSYQRSKsVNnPNVSLIKIEGVATPQEAQFYLGKRV 49
                4555555455588999*************9999988 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00022
                EEEEEEEETTTTEEEEEE-SSSGGGGG CS
        RimM  2 vGkIvgahGlkGevkVkpftdfpealf 28
                 GkI+++hG  G v+ k   + p++ f
  CCD24944.1 68 WGKITRSHGNSGVVRAKFRNNLPAKTF 94
                6**************998877776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       266  (0.0148363); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 833.05
//
Query:       CCD24945.1  [L=729]
Description: hypothetical protein NDAI_0E01290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-64  217.6   0.0    3.3e-64  216.8   0.0    1.4  1  Pkinase      Protein kinase domain
    3.3e-38  131.5   0.0    5.6e-38  130.7   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
      2e-08   33.9   0.0    3.1e-08   33.3   0.0    1.3  1  Kinase-like  Kinase-like
     0.0056   16.6   0.1      0.012   15.5   0.1    1.5  1  APH          Phosphotransferase enzyme family
     0.0092   15.6   0.0      0.025   14.2   0.0    1.7  1  RIO1         RIO1 family
  ------ inclusion threshold ------
      0.029   13.7   0.0      0.053   12.9   0.0    1.4  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
      0.041   14.1   0.1      0.093   12.9   0.1    1.5  1  DUF3951      Protein of unknown function (DUF3951)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.8   0.0   1.3e-67   3.3e-64       4     264 .]      49     316 ..      46     316 .. 0.89

  Alignments for each domain:
  == domain 1  score: 216.8 bits;  conditional E-value: 1.3e-67
                 EEEEEEESSEEEEEEEE........TTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHH CS
     Pkinase   4 leklGeGsfGkVykave........ketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerk 92 
                   +lGeG+fGkV  + +        ++++k++A+K i+++  kk ++   k+ rEi+ lk l hpnivrl ev+++++++ +vle+++gge+ ++l+rk
  CCD24945.1  49 GATLGEGEFGKVKLGWStasptaslDSNSKQIAIKLIRRDYVKKGSDkeIKIYREINALKLLTHPNIVRLEEVLQNSKYIGIVLEFASGGEFYKYLQRK 147
                 678*********887651111111157899********9988777665589************************************************ PP

                 SS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCB.SHHHHHHHHHHHHH CS
     Pkinase  93 gslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keney.skkvDvWslGvily 188
                 + l+e +a ++++q+++g+ y+Hskg++HrDlK eN+L+d++++l itDFG+++e+  s++ ++  +g++ Y APE++ ++++y  +kvD+Ws+G+ily
  CCD24945.1 148 RRLKEPHACQLFAQLISGVTYMHSKGLVHRDLKLENLLLDKNENLIITDFGFVNEFFGSNElMKRSCGSPCYAAPELVlSTEPYrARKVDIWSCGIILY 246
                 *******************************************************99999889**************999999999************* PP

                 HHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 189 elltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  +l+g  p+ +++++     + d++ k+++ +  tk +l+ +  is+ a+dl++k+l+ +p++R++++ +++h++l
  CCD24945.1 247 AMLAGYLPWDDDSQNP----NGDDIGKLYQYI--TKTALKFPAYISPLARDLIRKILTANPSRRISISYICKHDWL 316
                 **********444444....666645555554..568999999********************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   0.0   2.2e-41   5.6e-38       3     257 ..      48     312 ..      46     313 .. 0.86

  Alignments for each domain:
  == domain 1  score: 130.7 bits;  conditional E-value: 2.2e-41
                  EEEEEEEESSEEEEEEEEET....TTTSSEEEEEEEEESTTSSH...HHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg....ekekkevkVavKtlkeeate...eekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLr 93 
                  lg +lGeG+fGkV  g  +     + ++++ ++a+K +++++ +   +++ ++++e++ +k l hpniv+l  v  +++ + iv+e+++gG++ k+L+
   CCD24945.1  48 LGATLGEGEFGKVKLGWSTAsptaSLDSNSKQIAIKLIRRDYVKkgsDKEIKIYREINALKLLTHPNIVRLEEVLQNSKYIGIVLEFASGGEFYKYLQ 145
                  6789************99888888889999********8765541114577899******************************************** PP

                  HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHH CS
  Pkinase_Tyr  94 kkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvW 189
                  +k  ++l+  + +++ +q+ +G+ y++sk lvHrdl   N Ll++n+   i+DfG  ++   ++   +k+++  p  + apE + +++     k D+W
   CCD24945.1 146 RK--RRLKEPHACQLFAQLISGVTYMHSKGLVHRDLKLENLLLDKNENLIITDFGFVNEFFGSN-ELMKRSCGSP-CYAAPELVLSTEpyRARKVDIW 239
                  *8..9*******************************************************5544.4455555555.79****998888756789**** PP

                  HHHHHHHHHHTTSSGTTTTSHHHH......HHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 190 sfGvllwEiftlgespypglknee......vleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  s G++l+ ++  g  p+ + +++        l ++ +++ l+ p+++++   +l++k ++++p++R ++s + +
   CCD24945.1 240 SCGIILYAMLA-GYLPWDDDSQNPngddigKLYQYITKTALKFPAYISPLARDLIRKILTANPSRRISISYICK 312
                  *********99.****877644432455554444567788****************************998865 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   1.2e-11   3.1e-08     137     259 ..     146     264 ..     135     304 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 1.2e-11
  Kinase-like 137 thkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.seve..kgfaPpEllgsrggytrknktkmthkl 231
                  ++++l++    +l +qli  + ++++kglvh +++ +nllld++  l++++f+       +  l    +    +a pEl+ s   y+         k+
   CCD24945.1 146 RKRRLKEPHACQLFAQLISGVTYMHSKGLVHRDLKLENLLLDKNENLIITDFGFVNEFFGSNELmKRSCgsPCYAAPELVLSTEPYRA-------RKV 236
                  444444433345558*************************************988875444443233334599*********777877.......689 PP

  Kinase-like 232 daWqlGlviyriwclklPltlateeake 259
                  d W  G+  y + + +lP + + ++ + 
   CCD24945.1 237 DIWSCGIILYAMLAGYLPWDDDSQNPNG 264
                  *******************999877655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   4.8e-06     0.012     164     196 ..     170     200 ..     139     201 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.8e-06
                 S-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                  +++l+H+Dl++ Nll+d++++ +  + Df+++
  CCD24945.1 170 HSKGLVHRDLKLENLLLDKNENLI--ITDFGFV 200
                 5789**************999999..9999985 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   9.9e-06     0.025      56     149 ..     101     197 ..      71     208 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.9e-06
                 HHHHHHHHHHHHTT.--S--EEEEETTE.EEEE--EETTEEGGB.HHHCG-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE-- CS
        RIO1  56 ekEfrnLkrleeag.vpvPkpielkrhv.lvmefigedgvaapk.lkdvee..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviID 148
                  +E+++Lk l + + v+  ++++  + + +v+ef +  g + +k l+  ++  e +a +l++++++ +  +    glvH DL   N+l+d++ +++i D
  CCD24945.1 101 YREINALKLLTHPNiVRLEEVLQNSKYIgIVLEFAS--GGEFYKyLQRKRRlkEPHACQLFAQLISGVTYMH-SKGLVHRDLKLENLLLDKNeNLIITD 196
                 344555555544443444444444444458999999..433333144444234888999999***9876665.9******************6777778 PP

                 G CS
        RIO1 149 v 149
                 +
  CCD24945.1 197 F 197
                 7 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.1e-05     0.053     104     163 ..     139     194 ..      68     198 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.1e-05
         Kdo 104 dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwl 163
                 +  ++l++ ++l+e    +l+ ++   +  +h+ g+ H+dl   n+ll+++e    ++++
  CCD24945.1 139 EFYKYLQRKRRLKEPHACQLFAQLISGVTYMHSKGLVHRDLKLENLLLDKNE----NLII 194
                 56678888777888888888999999999********************998....5555 PP

>> DUF3951  Protein of unknown function (DUF3951)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   3.6e-05     0.093      28      46 ..     454     472 ..     453     475 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.6e-05
     DUF3951  28 vkkesidiyYTPfdsiTgq 46 
                 vk  +++i+ TP +++T+q
  CCD24945.1 454 VKHSTPTISHTPVENVTVQ 472
                 899***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.39
# Mc/sec: 5640.50
//
Query:       CCD24946.1  [L=230]
Description: hypothetical protein NDAI_0E01300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-50  169.9   9.7    4.4e-50  169.6   9.7    1.1  1  GrpE            GrpE
    0.00086   19.5   1.1     0.0015   18.7   1.1    1.5  1  Uds1            Up-regulated During Septation
     0.0025   17.6  13.7       0.15   11.8   0.3    2.1  2  TACC_C          Transforming acidic coiled-coil-containing pr
  ------ inclusion threshold ------
      0.031   14.6  15.9      0.028   14.8  15.0    1.3  1  OmpH            Outer membrane protein (OmpH-like)
       0.47    9.5   6.6       0.63    9.1   6.6    1.1  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
       0.77   10.2  10.8        2.1    8.8  10.8    1.7  1  Syntaxin_2      Syntaxin-like protein
       0.82    9.7   6.5        1.2    9.2   6.5    1.3  1  DUF1451         Zinc-ribbon containing domain
        1.2    9.7   6.8       0.63   10.7   3.7    2.0  2  DUF883          Bacterial protein of unknown function (DUF883
        1.3    9.1  10.2        1.8    8.6  10.2    1.2  1  UPF0242         Uncharacterised protein family (UPF0242) N-te
        1.5    7.5   3.3        2.4    6.8   3.3    1.3  1  O-antigen_lig   O-antigen ligase like membrane protein
          2    9.1  13.8        3.1    8.5  11.2    2.2  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
        4.3    6.6  12.0          7    5.9  11.9    1.3  1  DUF4407         Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.6   9.7     3e-53   4.4e-50       3     166 .]      57     225 ..      47     225 .. 0.94

  Alignments for each domain:
  == domain 1  score: 169.6 bits;  conditional E-value: 3e-53
                 ....CTTTHHHHCCCCCCTTCHHHCTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC.......HHH-HHHHHHHHH CS
        GrpE   3 neeeeeeeedeeeeleeeleelekevkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksak.....eneeekslleGve 96 
                  +e+ +ee++++++l+eel++  ke++elk++llr+ a+f nl++ t+k++++ak+fa++kfakdLL+ +Dn+  al+++k     +++e+ +l++Gv+
  CCD24946.1  57 ANENLTEEQKKIKSLQEELSAKTKEAAELKDSLLRSVADFRNLQNITKKDIQKAKDFALQKFAKDLLESVDNFGHALSAFKeedleKSKEIADLYTGVR 155
                 678899**************************************************************************966555555555******* PP

                 HHHHHHHHHHHHTT-EE---TTSB--TTTEEEEEEECSSC...TBEEEEEE--EEETTEEEE-EEEEEEE CS
        GrpE  97 mtlkqllkiLekhgvekiepkgepFDpnlheavstveddekeegtvvevvqkGYklkdrvlRpAmVkVsk 166
                 mt++ ++k+L+khg+ek++p+ge FDpn hea ++v +++ke+gtv++v q G++l+drv+RpA+V+++k
  CCD24946.1 156 MTRDVFEKTLKKHGLEKLDPMGETFDPNKHEATFEVAQPDKEPGTVFHVQQVGFTLNDRVIRPAKVGIVK 225
                 *******************************************************************986 PP

>> Uds1  Up-regulated During Septation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.1     1e-06    0.0015      61     124 ..      42      94 ..       8     100 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1e-06
        Uds1  61 yssskksakssaarsnskssreslakaeeelaeserkvdelaselekleeraaevrrrLLeHtA 124
                 y s          ++ +++s++++++a+e+l+e ++k++ l++el   +++aae++ +LL+ +A
  CCD24946.1  42 Y-S----------DKAQEKSEKTEENANENLTEEQKKIKSLQEELSAKTKEAAELKDSLLRSVA 94 
                 3.2..........23344566799************************************9776 PP

>> TACC_C  Transforming acidic coiled-coil-containing protein (TACC), C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   8.0   0.00059      0.88     155     193 ..      47      85 ..      42      89 .. 0.82
   2 !   11.8   0.3    0.0001      0.15      69     161 ..      98     190 ..      92     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00059
      TACC_C 155 rskakaetaalqasLrkeqlkvqSLeksleqKtkeneeL 193
                 ++k+++     + +L+ eq k++SL+++l  Ktke +eL
  CCD24946.1  47 QEKSEKTEENANENLTEEQKKIKSLQEELSAKTKEAAEL 85 
                 45555555566778************************9 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.0001
      TACC_C  69 eiqkvleekeqlladlnsveksfsdlfkryekqkevlegykkneeslkkcaeeylarvkkeeqRYq.aLkahaeekLekAneeiaqvrskakae 161
                 ++q++++   q ++d+  ++k  +dl++ +++  ++l+ +k+ +    k++ ++ + v+     ++ +Lk+h  ekL+   e  +  +++a  e
  CCD24946.1  98 NLQNITKKDIQKAKDF-ALQKFAKDLLESVDNFGHALSAFKEEDLEKSKEIADLYTGVRMTRDVFEkTLKKHGLEKLDPMGETFDPNKHEATFE 190
                 5666666666666776.89999******************************************9636*********98888887777666655 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8  15.0   1.9e-05     0.028      18     105 ..      44     129 ..      29     135 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  18 kaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinkaikev 105
                  +aqe+ ek++++ ++ l++++k++++lqeel +k+k+   +e +  l + +++++++q+ +++++qk++  +l+++ + + + ++++
  CCD24946.1  44 DKAQEKSEKTEENANENLTEEQKKIKSLQEELSAKTKE--AAELKDSLLRSVADFRNLQNITKKDIQKAKDFALQKFAKDLLESVDNF 129
                 579*****************************976666..5667777**********777777*******999999998888887765 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   6.6   0.00042      0.63      85     173 ..      49     155 ..      38     172 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00042
       Atg14  85 elkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleerrkkqiaklqdaikrieqk.....lsslssktles..............rsslcse 164
                 + +++ ++ ++ + e +kk+++l+++l+ ++++++ l+++l  r  + +++lq+ +k+  qk     l+++ +++les              ++++++e
  CCD24946.1  49 KSEKTEENANENLTEEQKKIKSLQEELSAKTKEAAELKDSLL-RSVADFRNLQNITKKDIQKakdfaLQKFAKDLLESvdnfghalsafkeeDLEKSKE 146
                 333444556677788999999999999999999999988886.66778888888888554444555677777777777777888787787889999999 PP

       Atg14 165 laklyglrr 173
                 +a ly+  r
  CCD24946.1 147 IADLYTGVR 155
                 999996555 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8  10.8    0.0014       2.1      25      95 ..      51     138 ..      39     143 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0014
  Syntaxin_2  25 kkdteelreklhelieeinelikktnellkklsqldnsssds.................qqklqkekLkkdfkealqeFqkiqrqyae 95 
                  k  e+ +e+l e +++i+ l ++ +++ k+ ++l++s++ s                 ++ ++ +k +kd+ e++ +F  +   ++e
  CCD24946.1  51 EKTEENANENLTEEQKKIKSLQEELSAKTKEAAELKDSLLRSvadfrnlqnitkkdiqkAKDFALQKFAKDLLESVDNFGHALSAFKE 138
                 456788899******************************9999*****9999999988888889999999999999999988777766 PP

>> DUF1451  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.5   0.00078       1.2       3      80 ..      50     126 ..      44     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00078
     DUF1451   3 leeaeekseeeleelvekakeklseaeeltkeelelvaeylkrDleeaarsleeskeeleewlsldlelieeslleal 80 
                  e++ee+++e+l+e+ +k k  l+e+  ++ +e++++++ l r ++++ +  + +k+++++ + + l+   + lle+ 
  CCD24946.1  50 SEKTEENANENLTEEQKKIKS-LQEELSAKTKEAAELKDSLLRSVADFRNLQNITKKDIQKAKDFALQKFAKDLLESV 126
                 345555555555555444443.4444456778999******************************9999988888765 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.7   0.00042      0.63      17      68 ..      38      89 ..      33      95 .. 0.90
   2 ?   -0.2   0.1       1.1   1.6e+03      30      51 ..     116     137 ..      83     155 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00042
      DUF883 17 llkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddy 68
                +++  +d+a+e+ e+  e+++e+l++ +++++ ++e++ +++keaae  d+ 
  CCD24946.1 38 MMRLYSDKAQEKSEKTEENANENLTEEQKKIKSLQEELSAKTKEAAELKDSL 89
                5677899***************************************977765 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
      DUF883  30 eelRerleerlerarerlrdae 51 
                 ++  + l e++++  ++l++ +
  CCD24946.1 116 QKFAKDLLESVDNFGHALSAFK 137
                 2233333333333334444444 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  10.2    0.0012       1.8      53     134 ..      38     130 ..      34     174 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0012
     UPF0242  53 lllkwekalkeklekskleekeaklteldeglktkeealeelqeeeeeLkee...........ldakeeelerlke.enqqLqekleaiaedfe 134
                 +++ ++++++ek ek + +++e++  e++ ++k  +e+l   ++e  eLk+            ++  ++ +++ k    q++ + l +++ +f 
  CCD24946.1  38 MMRLYSDKAQEKSEKTEENANENLTEEQK-KIKSLQEELSAKTKEAAELKDSllrsvadfrnlQNITKKDIQKAKDfALQKFAKDLLESVDNFG 130
                 55666666666666666555555444444.7777777777777777777777555555555443444444444433122344444444444554 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.3    0.0016       2.4     275     354 ..      41     113 ..      20     118 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0016
  O-antigen_lig 275 lkekeieiksekkeeeeikneikenykseglkeavleqyeyandkqfsqellkeeveslllsnRdlqlkvlkqvyknadi 354
                    l+++++++ksek+ee+  +n ++e+ k+++l+e+   + ++a      +el++ ++   + + R+lq +  k++ k +d+
     CCD24946.1  41 LYSDKAQEKSEKTEENANENLTEEQKKIKSLQEELSAKTKEA------AELKD-SLLRSVADFRNLQNITKKDIQKAKDF 113
                    556666766666666666666666666666655554444444......33334.4445555*******999999997665 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  11.2    0.0021       3.1      32      79 ..      46      93 ..      39     112 .. 0.86
   2 ?    1.0   0.1      0.43   6.4e+02      49      78 ..     110     139 ..      93     161 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0021
  HIP1_clath_bdg 32 leeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesse 79
                     +e+ e+ +e+a+++l e ++++++L++el ak +e a+lk sL +s 
      CCD24946.1 46 AQEKSEKTEENANENLTEEQKKIKSLQEELSAKTKEAAELKDSLLRSV 93
                    5788899999*********************************98765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.43
  HIP1_clath_bdg  49 eqkeelekLkreleakraelarlkssLess 78 
                      + + l+k+ ++l ++ +++ ++ s+ +++
      CCD24946.1 110 AKDFALQKFAKDLLESVDNFGHALSAFKEE 139
                     455666666666666655554444444333 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  11.9    0.0047         7     116     171 ..      42      96 ..      38     170 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0047
     DUF4407 116 qqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk 171
                 ++++a+e +e++++++++ l+e++++i++lq+e++a+ +++++l++ + + +   +
  CCD24946.1  42 YSDKAQEKSEKTEENANENLTEEQKKIKSLQEELSAKTKEAAELKDSLLRSVAD-F 96 
                 57789999999**********************************999887774.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2746  (0.15316); expected 358.6 (0.02)
Passed bias filter:                      951  (0.0530426); expected 358.6 (0.02)
Passed Vit filter:                       133  (0.00741815); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 1634.25
//
Query:       CCD24947.1  [L=536]
Description: hypothetical protein NDAI_0E01310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-73  246.7   0.0    3.6e-73  246.2   0.0    1.2  1  Pkinase         Protein kinase domain
    1.9e-35  122.4   0.0    3.9e-35  121.4   0.0    1.5  1  Pkinase_Tyr     Protein tyrosine kinase
    5.7e-08   32.4   0.0      1e-07   31.6   0.0    1.4  1  Kinase-like     Kinase-like
    0.00052   19.7   0.1       0.26   10.9   0.2    2.4  2  FTA2            Kinetochore Sim4 complex subunit FTA2
     0.0034   16.2   0.0     0.0065   15.3   0.0    1.4  1  Pkinase_fungal  Fungal protein kinase
     0.0087   15.2   0.0      0.015   14.4   0.0    1.3  1  Seadorna_VP7    Seadornavirus VP7
  ------ inclusion threshold ------
      0.026   13.9   0.0       0.04   13.3   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.087   11.7   3.2        0.3   10.0   3.2    2.0  1  Haspin_kinase   Haspin like kinase domain
       0.11   12.5   0.0       0.23   11.4   0.0    1.4  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.2   0.0   1.8e-76   3.6e-73       5     264 .]     251     514 ..     247     514 .. 0.93

  Alignments for each domain:
  == domain 1  score: 246.2 bits;  conditional E-value: 1.8e-76
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH....HHSS--H CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladlle....rkgslse 97 
                   lGeG+ G+V k++ k+ +ki+A+K++++ +++ + +k+++rE+++ k++k+++ivr+y++f++  ++++y+ +ey++g++l+ +++    r g + e
  CCD24947.1 251 GVLGEGAGGSVEKCKLKHGSKIFALKIVNTLNTDPEFQKQIFRELQFNKSFKSDYIVRYYGMFNDvnSSSIYIAMEYMSGKSLDAVYKnllnRGGRIGE 349
                 689*************************************************************99899*************77777767658899*** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkpp 196
                 + + kia+++l+gl+ylH++++iHrD+Kp+NiL++e g++K++DFG++ e+ +s  +t+f+gts Y+APE +++++ys ++DvWslG++++e+  g+ p
  CCD24947.1 350 KVLGKIAESVLRGLSYLHEQKVIHRDIKPQNILFNEMGQVKLCDFGVSGEAVNSL-ATTFTGTSFYMAPERIQGQPYSVTCDVWSLGLTILEVAQGRFP 447
                 *****************************************************98.******************************************* PP

                 TTTSSHHHHHHHHHHTHHHHHHHCT...SHH...HHHTTS..-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilg...etkeklpeasei..seeakdllkkllkkdpkkRltaeellqhpyl 264
                 f     ++k+++++  +e ++ il+   +  +k + +s+i  s+ +k++++ +lkk+p++R++ ++++qhp++
  CCD24947.1 448 FG----SDKITANIAPIELLVLILTfspQ--LKDEPESNIswSKAFKSFIHYCLKKEPHERPSPRQMIQHPWI 514
                 **....44566788888899999988544..55555555545******************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.0     2e-38   3.9e-35       6     257 ..     252     510 ..     247     511 .. 0.83

  Alignments for each domain:
  == domain 1  score: 121.4 bits;  conditional E-value: 2e-38
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHT..CTT CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkk..eke 98 
                   lGeGa G+V +++lk    + +   a+K+++  +t+ e ++++++e+++ k++k + iv+++g+    ++++++i +ey++g +L+   ++   +  
   CCD24947.1 252 VLGEGAGGSVEKCKLK----HGSKIFALKIVNTLNTDPEfQKQIFRELQFNKSFKSDYIVRYYGMFNdvNSSSIYIAMEYMSGKSLDAVYKNLlnRGG 345
                  79**************....66778899*9988766666599************************9888999***********99876554322489 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllw 196
                  ++  k l ++a  v +G++yL+++k++Hrd+  +N+L +e  +vk++DfG++ +       + +++ +    +mapE ++ + +++  DvWs G ++ 
   CCD24947.1 346 RIGEKVLGKIAESVLRGLSYLHEQKVIHRDIKPQNILFNEMGQVKLCDFGVSGEA----VNSLATTFTGTSFYMAPERIQGQPYSVTCDVWSLGLTIL 439
                  999999**********************************************999....3334445556778************************** PP

                  HHHTTSSGT......TTTSHHHHHHHHH.....HTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 197 Eiftlgesp......ypglkneevlekl.....kegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  E+++ g+ p       +++ + e+l  +     + + + e + +++++++++++ c++++p+eRp+ +++++
   CCD24947.1 440 EVAQ-GRFPfgsdkiTANIAPIELLVLIltfspQLKDEPESNISWSKAFKSFIHYCLKKEPHERPSPRQMIQ 510
                  **99.99996666654555555544444311122333445555789999****************9998876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0     5e-11     1e-07     141     258 ..     352     456 ..     297     464 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 5e-11
  Kinase-like 141 letiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGl 238
                  l++ia+ +l     r   +L+++ ++h +++++n+l++e g+++l +f+     g ++v ++ + +f    +  +  +    +   ++   d+W lGl
   CCD24947.1 352 LGKIAESVL-----RGLSYLHEQKVIHRDIKPQNILFNEMGQVKLCDFGV---SG-EAV-NSLATTFTGTSFYMAPER---IQGQPYSVTCDVWSLGL 436
                  555555555.....7789******************************85...33.334.688899999888888666...4567899********** PP

  Kinase-like 239 viyriwclklPltlateeak 258
                  +i+ ++    P++ ++  a+
   CCD24947.1 437 TILEVAQGRFPFGSDKITAN 456
                  ************98876655 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.002       3.9      20      98 ..     243     316 ..     239     327 .. 0.67
   2 !   10.9   0.2   0.00013      0.26     153     212 ..     329     395 ..     287     397 .. 0.71

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.002
        FTA2  20 aekdiefleyLgkglhsiVlkvk..irgkeYALKlFrfleaeeleeaeedlkiprealkelasysdpfasEC..RAfgRLkea 98 
                  +++i  l +Lg+g+ + V k k   + k++ALK+  +l+         ++ + ++++ +  ++ ++f+s+   R +g ++++
  CCD24947.1 243 MKDQIITLGVLGEGAGGSVEKCKlkHGSKIFALKIVNTLN---------TDPEFQKQIFRELQFNKSFKSDYivRYYGMFNDV 316
                 5678999**********997665115678*****988883.........3344444444555555666555444666666555 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00013
        FTA2 153 kkrpiraIVKel..ellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi.....dgkLvDls 212
                   + + a+ K+l  +  +  e++  ++++ +lr l  lh++ +++rD+k++n++     + kL+D++
  CCD24947.1 329 SGKSLDAVYKNLlnRGGRIGEKVLGKIAESVLRGLSYLHEQKVIHRDIKPQNILfnemgQVKLCDFG 395
                 55555555555555445566788889999***********************985444445788887 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.2e-06    0.0065     314     396 ..     358     430 ..     350     434 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.2e-06
  Pkinase_fungal 314 DaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhD 396
                      +++g+  L+ +++++HrDi  +Nil++     +  +  L D+ +  e  +    s a + tGT  +ma e ++g+  s+  D
      CCD24947.1 358 SVLRGLSYLH-EQKVIHRDIKPQNILFN-----EMGQVKLCDFGVSGEAVN----SLATTFTGTSFYMAPERIQGQPYSVTCD 430
                     57889999**.*****************.....456778999888887773....5556899**9999999999876666555 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.5e-06     0.015     151     187 ..     360     394 ..     347     410 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.5e-06
  Seadorna_VP7 151 lkdLmdfhsestnllhGDcnpenlmcDknGylklvDP 187
                   l+ L  +h  +++++h D++p+n++ +++G++kl D 
    CCD24947.1 360 LRGLSYLH--EQKVIHRDIKPQNILFNEMGQVKLCDF 394
                   56677788..899*********************995 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0     2e-05      0.04     103     166 ..     331     394 ..     298     402 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-05
         Kdo 103 qdLedllakwae....laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 ++L++++++  +    ++e++  ++ + v r  + lh+ +v H+d+ ++nil+++ +    ++ l D+
  CCD24947.1 331 KSLDAVYKNLLNrggrIGEKVLGKIAESVLRGLSYLHEQKVIHRDIKPQNILFNEMG----QVKLCDF 394
                 57777777766634445666666667777777789*******************999....7777777 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.2   0.00015       0.3      76     254 ..     190     397 ..      30     410 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00015
  Haspin_kinase  76 v......kdfdevilsqilelckikkilnea..dlasllndseklssevyqtkekdkevvlKvipl.....evledvtiskelslkelkslklvkg 158
                    +      +++  +i +  ++  ++++ + ++  d+  + +d  +l +e++++ +++++++   + l     + +e  + ++ +++  lk ++ ++ 
     CCD24947.1 190 AspikspTKHIPTITTTSIDT-NLQQTITDTttDELLMNKDVDQLDEEIWNCPNMKDQIITLGV-LgegagGSVEKCKLKHGSKIFALKIVNTLNT 283
                    244433333333333333333.333444444123333344488999999999997777665433.2457777777777777788888888888877 PP

  Haspin_kinase 159 typglllllqdkvlkek...........pdfyseqqlflvlllkd.kGtdLeev..klksw..kqalsifwqivkiL.....yvaEtkfeFEHRdL 233
                      p++   +  +++ +k             f + +  ++++ +++ +G++L+ v  +l +   +   +++ +i++++     y+ E+  +  HRd+
     CCD24947.1 284 D-PEFQKQIFRELQFNKsfksdyivryyGMFNDVNSSSIYIAMEYmSGKSLDAVykNLLNRggRIGEKVLGKIAESVlrglsYLHEQ--KVIHRDI 376
                    7.7776666655555555677788777666777788889999987359999998553333211334566666665541111222333..356**** PP

  Haspin_kinase 234 hldniLvdknlnvtlidlkls 254
                    + +niL ++ ++v l+d+ +s
     CCD24947.1 377 KPQNILFNEMGQVKLCDFGVS 397
                    ******************877 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.23     150     187 ..     349     389 ..     331     398 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                 HHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TTEE CS
         APH 150 eqvlaalaallpg....elptvllHgDlhpgNllvdpddgrv 187
                 e vl ++a+ +++      ++ ++H+D++p+N+l++ + g+v
  CCD24947.1 349 EKVLGKIAESVLRglsyLHEQKVIHRDIKPQNILFN-EMGQV 389
                 55666667777767777778889*************.66665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       826  (0.0460706); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.61u 0.23s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4017.67
//
Query:       CCD24948.1  [L=427]
Description: hypothetical protein NDAI_0E01320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-05   24.5   5.3      0.041   14.8   0.2    4.1  3  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   2.3e-06     0.041      12      38 .]     215     241 ..     203     241 .. 0.67
   2 ?    3.1   0.1     0.011     2e+02      21      38 .]     269     286 ..     247     286 .. 0.78
   3 !    6.5   0.1   0.00092        17      10      38 .]     316     348 ..     309     348 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.3e-06
                 SE.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 sv.tslafspdgawlasGsdDgtvriWd 38 
                  v + ++f  d++++as+sdD+ +r+Wd
  CCD24948.1 215 TVtHTVRFF-DNHMFASCSDDNVLRFWD 241
                 363344444.5555599**********9 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.011
                 TSSEEEEE.ETTSEEEEEE CS
        WD40  21 dgawlasG.sdDgtvriWd 38 
                 +++++++G s  g +++Wd
  CCD24948.1 269 SSDLFVAGfS-TGVLKLWD 286
                 5666899*55.*******9 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.00092
                 S.SS..EEEEEEETTSSE..EEEEETTSEEEEEE CS
        WD40  10 H.ss..vtslafspdgaw..lasGsdDgtvriWd 38 
                 H ++  v +++fsp ++   l+ G+  g+v+ Wd
  CCD24948.1 316 HsGGdsVVDVQFSPTSPSeiLTVGG-SGNVYHWD 348
                 53114599**********9877899.*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3092.16
//
Query:       CCD24949.1  [L=430]
Description: hypothetical protein NDAI_0E01330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0011   19.7  10.3      0.017   16.0   0.5    4.4  4  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.067   12.5   0.0       0.28   10.5   0.0    1.8  2  PHTB1_N   PTHB1 N-terminus


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.85   7.6e+03      13      36 ..     164     192 ..     151     194 .. 0.45
   2 !   16.0   0.5   1.9e-06     0.017      12      38 .]     212     238 ..     200     238 .. 0.70
   3 ?    3.7   0.0     0.014   1.2e+02      23      38 .]     268     283 ..     244     283 .. 0.76
   4 ?    3.8   0.3     0.013   1.2e+02      12      38 .]     316     345 ..     306     345 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.85
                 EEEEEEETTSSEEE....EEE.TTSEEEE CS
        WD40  13 vtslafspdgawla....sGs.dDgtvri 36 
                 v++++ s +   ++    sG+ +D  ++i
  CCD24949.1 164 VSDFCLSCNLETVVksqsSGTeEDSILKI 192
                 44444444444443222134334776666 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.9e-06
                 SE.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 sv.tslafspdgawlasGsdDgtvriWd 38 
                  v +s++f +++ + as+sdD+ +r+Wd
  CCD24949.1 212 TVtHSVRFFDNHLF-ASCSDDNVLRFWD 238
                 36557766666666.89**********9 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.014
                 SEEEEE.ETTSEEEEEE CS
        WD40  23 awlasG.sdDgtvriWd 38 
                  ++++G s  g +++Wd
  CCD24949.1 268 ELFVTGfS-TGIIKLWD 283
                 34789*55.*******9 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.013
                 S..EEEEEEETTSSE..EEEEETTSEEEEEE CS
        WD40  12 s..vtslafspdgaw..lasGsdDgtvriWd 38 
                 +  v +++fsp ++   l+ G+  g+v+ Wd
  CCD24949.1 316 GdsVVDIQFSPTSSSdfLTVGG-TGNVYHWD 345
                 1348899988877777688899.99999998 PP

>> PHTB1_N  PTHB1 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.1e-05      0.28     176     271 ..      32     134 ..       5     160 .. 0.72
   2 ?   -0.6   0.0     0.074   6.6e+02      29      74 ..     259     304 ..     241     313 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 3.1e-05
     PHTB1_N 176 fllPgPlaYvqktdslvtansslelecykyqalasasekksk.kaeten..........sskklkpdWslniGEealdievvevskeesdiivLger.s 262
                  +l+++l Y q  d    +  +l l+++ yq+++  s+k+s+ +    +          +  kl p+W + +GE++ +++  e s ++++ii++ ++ s
  CCD24949.1  32 GTLSTSLLYSQGSDIY-EIDCALPLASF-YQTISGGSRKDSSlAIP--SpeygdafhdvEDTKLAPKWVY-LGETIAKMSYLESSMDDTTIIAMSKNgS 125
                 4677777777777754.34445557776.89999998888853333..1458889999779*******76.9**************9999999986526 PP

     PHTB1_N 263 lfllkesGe 271
                 l ++k+  +
  CCD24949.1 126 LAWFKDGCK 134
                 777777655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.074
     PHTB1_N  29 nldnekqekdkivvGSlsGvLriyspsskeeksedllletqlkePI 74 
                 ++d ++ +++  v+G  +G++++ +++  e +s+dl   ++ +ePI
  CCD24949.1 259 SFDTSQVTNELFVTGFSTGIIKLWDVRAVETASNDLTHRQNGEEPI 304
                 667777677777888889*******************999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       271  (0.0151152); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3236.69
//
Query:       CCD24950.1  [L=393]
Description: hypothetical protein NDAI_0E01340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-92  311.0  10.6    5.1e-86  289.0   2.2    2.8  3  Tam41_Mmp37  Phosphatidate cytidylyltransferase, mitochondria


Domain annotation for each model (and alignments):
>> Tam41_Mmp37  Phosphatidate cytidylyltransferase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1     0.037   6.6e+02     240     297 ..      14      72 ..       4      91 .. 0.61
   2 !  289.0   2.2   2.8e-90   5.1e-86       1     211 [.     123     334 ..     123     344 .. 0.94
   3 !   26.6   0.1   2.1e-10   3.7e-06     284     323 .]     350     389 ..     343     389 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.037
  Tam41_Mmp37 240 ellrkLPkklrskllskyekklskkkkdeeeflkkiakdee..laeevkkaikkivakss 297
                  ++ rkL ++l+s++ +   + + +k+++  +++++i+ +++   ++  +++++++v++ s
   CCD24950.1  14 AISRKLARRLQSTIAKDNVHAS-TKHSQMDTIIHDIVPTRDstHQNPSEDILDSTVNNNS 72 
                  4556666666666666633333.4555555556666554432245555556666666655 PP

  == domain 2  score: 289.0 bits;  conditional E-value: 2.8e-90
  Tam41_Mmp37   1 lekilkkfpapiryafaYGSgvfkqkgykkkkkkkkmiDlifavsdpeewHslNlkqnpsHYsllrrlgskliskvqeklgagvyfnplvevngkliK 98 
                  le+il++f+api+yaf+YGSgvf+q+gy  + k+k++iD+if+v++p+++HslN++qnp+HYs+l+++gs++i+k+q+ +gag+yfnp+v++ng+ +K
   CCD24950.1 123 LESILNQFNAPIKYAFGYGSGVFEQTGY--NIKEKPQIDMIFGVTHPSHFHSLNMRQNPDHYSTLKYFGSEFIAKFQD-IGAGIYFNPFVKINGHEVK 217
                  789*************************..9999*******************************************9.******************* PP

  Tam41_Mmp37  99 YGVvsledllkDLleWdtLYlaGRlqKPvkilrddarirlanqvNlksAlraa..Llll..pekfteeeLyetiasLSYlGDlRmklggEnknKvkni 192
                  YG+vs++ llkDL +W+t+YlaGRlqKPvkil++d r++  nq Nlk+A ++a  L l   + kf+e e+y++i+++SYlGD+R  lg+En+nKv+ni
   CCD24950.1 218 YGIVSMKMLLKDLATWNTFYLAGRLQKPVKILKNDLRVQYWNQLNLKAAATIAkhLTLQknNGKFDEFEFYKEITGISYLGDIRYVLGAENPNKVQNI 315
                  *************************************************999843333333556********************************** PP

  Tam41_Mmp37 193 VekqleefrelYkplleel 211
                  V+k++++f++ Y+p+ +++
   CCD24950.1 316 VDKNFTRFQSYYEPIYKDV 334
                  **************99876 PP

  == domain 3  score: 26.6 bits;  conditional E-value: 2.1e-10
  Tam41_Mmp37 284 evkkaikkivaksslkqslkgvltaGvvksvkYaleKlkk 323
                  + ++ ++  +++ss+ q+lkg+ltaG++ks++Ya++K +k
   CCD24950.1 350 NTTRKLRGRISRSSILQTLKGILTAGPAKSLRYAWAKKMK 389
                  556789999***************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       675  (0.0376485); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2922.57
//
Query:       CCD24951.1  [L=315]
Description: hypothetical protein NDAI_0E01350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-20   73.4   0.3    4.3e-10   40.3   0.0    2.3  2  DUF1691   Protein of unknown function (DUF1691)
    0.00068   19.7   0.2      0.049   13.7   0.4    2.2  2  Sdh_cyt   Succinate dehydrogenase/Fumarate reductase transmem


Domain annotation for each model (and alignments):
>> DUF1691  Protein of unknown function (DUF1691)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   4.8e-14   4.3e-10       2     105 ..      68     183 ..      67     185 .. 0.79
   2 !   31.3   0.1     3e-11   2.7e-07       1      83 [.     197     277 ..     197     303 .. 0.82

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 4.8e-14
     DUF1691   2 llglHvlvnrivPllvgdsskvgll.yvahglarspplslleyaaLvgsgvlHivsGlakwlgllrilkki.kkkkrrrrwliingiaaak........ 90 
                 +++lH ++++i+Pl+ ++s ++ +l  ++ ++    p+  + + +L+gs+++H++sG++     lr+ +++ +k++++  +++  +ia ak        
  CCD24951.1  68 YFPLHSVNTLILPLIEPKSLPDKFLnTISEKI----PS-RILTSILLGSISIHLTSGII-----LRVSHWLyHKRQEKDDDIHSGRIARAKasgfrpfl 156
                 99**************9999999761556666....33.5889****************.....77444446555566655555555555599999999 PP

     DUF1691  91 .......aalglaGg.....lgvvkrg 105
                        +a+gl Gg     +g++kr+
  CCD24951.1 157 qtedtsqQAIGLSGGvlgyiIGFKKRF 183
                 **99999*********99999999987 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 3e-11
     DUF1691   1 pllglHvlvnrivPllvgdsskvgllyvahglarsppl.....slleyaaLvgsgvlHivsGlakwlgllrilkkikkkkrrrrwlii 83 
                 p+l++H+l+ +++P +   + ++ ++++ + l++   +     +++++a+Lvgsg++Hi sG++++ g+++       ++rr++  +i
  CCD24951.1 197 PFLIYHLLILKYLPGTQ-IENNEKFQFIRWILQNTDKSirwigGIVPLAILVGSGTYHIGSGMVQYAGVKD------LQRRRKMATAI 277
                 79**************9.678999999999998876666778899*************************6......45666655555 PP

>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0075        67      26      87 ..      58     120 ..      55     138 .. 0.71
   2 !   13.7   0.4   5.4e-06     0.049      28     119 ..     190     286 ..     186     288 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.0075
     Sdh_cyt  26 hritGvallvglllllvwlllalsls.spesfarvvallas.piklilllllllallyHllnGi 87 
                 ++++ + +l+ +++l+ + +l l l   ++  +++ + ++  +   il  +ll +  +Hl  Gi
  CCD24951.1  58 QKYSTWPMLL-YFPLHSVNTLILPLIePKSLPDKFLNTISEkIPSRILTSILLGSISIHLTSGI 120
                 6777777888.66666655554444505556677788888887788888999999999**9998 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 5.4e-06
     Sdh_cyt  28 itGvallv.glllllvwlllalsls.spesfarvvallaspiklilllllllallyHllnGiRhllwD.l.glgl.elesarksalavlalavalvl 119
                 ++G +ll+ ++++ll+ + l  +     e f+ + ++l++  k+i +++ +++l++ +  G +h+    +   g+ +l+++rk a+a+++l+   ++
  CCD24951.1 190 VSGYLLLPfLIYHLLILKYLPGTQIeNNEKFQFIRWILQNTDKSIRWIGGIVPLAILVGSGTYHIGSGmVqYAGVkDLQRRRKMATAITLLISSGII 286
                 8**************9888777655477788888888888777777777777777777788888766543234444668888888888877765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2279.52
//
Query:       CCD24952.1  [L=1277]
Description: hypothetical protein NDAI_0E01360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1616  (0.0901333); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.48
# Mc/sec: 8046.79
//
Query:       CCD24953.1  [L=162]
Description: hypothetical protein NDAI_0E01370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-56  188.8   0.3    4.4e-56  188.5   0.3    1.0  1  NifU_N    NifU-like N terminal domain
     0.0032   17.7   0.2     0.0059   16.8   0.2    1.4  1  TSCPD     TSCPD domain


Domain annotation for each model (and alignments):
>> NifU_N  NifU-like N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.5   0.3   4.9e-60   4.4e-56       2     128 ..      32     157 ..      31     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 188.5 bits;  conditional E-value: 4.9e-60
                 SCHHHHHHHHSSSSBSS-TTSSS--EEEEEEETTTTEEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHCCCCHHHHHHHHTCS CS
      NifU_N   2 ysdkvldhyknPrnvGvleeedakvgvgevgapacGDavrLqikvdeetdriedakFktfGCgsaiAssslltelvkgktleealkitnkeiaeelggl 100
                 y++kv++hy+nPrnvG+l++++ +vg+g vgapacGD+++Lqi+v+++t++ie++kFktfGCgsaiAsss++telv+g+++++a+ki+n eia+el+ l
  CCD24953.1  32 YHQKVIEHYTNPRNVGSLDKSQGNVGTGIVGAPACGDVIKLQIQVNDDTGIIENVKFKTFGCGSAIASSSYMTELVNGMSIDDAQKIKNIEIAKELS-L 129
                 9************************************************************************************************.* PP

                 CSSSCHCSCHHHHHHHHHHHHHHHHCTH CS
      NifU_N 101 pkeklhcsvlaedalkaavkkYkakkke 128
                 p++klhcs+laeda+kaa+k+Y++k+++
  CCD24953.1 130 PPVKLHCSMLAEDAIKAAIKDYRTKRTK 157
                 ************************9875 PP

>> TSCPD  TSCPD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   6.6e-07    0.0059       7      52 ..      66     118 ..      63     129 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.6e-07
       TSCPD   7 Csreieievd.dk...liknvkfvg.GCngnlkg...iskLvegmkveevikkl 52 
                 C+  i+++++ ++   +i+nvkf   GC + + +   +++Lv+gm+++++ k +
  CCD24953.1  66 CGDVIKLQIQvNDdtgIIENVKFKTfGCGSAIASssyMTELVNGMSIDDAQK-I 118
                 7766666555433357******9644**776654333889********9754.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1216.25
//
Query:       CCD24954.1  [L=151]
Description: hypothetical protein NDAI_0E01380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.7e-46  155.7   0.1    8.7e-46  155.6   0.1    1.0  1  RNA_pol_Rpb8  RNA polymerase Rpb8
    0.00059   19.9   0.9       0.36   10.9   0.2    2.1  2  RNA_pol_RpbG  DNA-directed RNA polymerase, subunit G
  ------ inclusion threshold ------
       0.15   12.2   0.1       0.24   11.5   0.1    1.3  1  TcpA          Toxin-coregulated pilus subunit TcpA


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb8  RNA polymerase Rpb8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.1   1.5e-49   8.7e-46       1     139 []       7     151 .]       7     151 .] 0.90

  Alignments for each domain:
  == domain 1  score: 155.6 bits;  conditional E-value: 1.5e-49
                   EEEEEEEEEE-..TT-SSEEEEEEEESS-.S-EEEEEEETTTS---SS-EEEEEEES------------------..........GGS-CGGGSSEE CS
  RNA_pol_Rpb8   1 ediFevkdvdkdgkkfdrVsRieaesesl.emeltlDintelyplkegdkltlvlasslsldgskdeeeakkswe..........geksladkydYv 86 
                   +diF+v++vd    ++++V Riea+s+++ +++l lDintel+p++++d+lt+++assls d+++++++++k+ +          g++slad+ydYv
    CCD24954.1   7 DDIFTVTEVDA--GRYNKVCRIEASSTTQeQCKLALDINTELFPVQNQDQLTITIASSLSIDNDDESSKNNKNSAatrswrppqpGDRSLADDYDYV 101
                   79*********..99***********9998******************************995544333333221345566899************* PP

                   EBEEEEEEEE-ST..T-EEEEEEBTTBEEEEEBSHHTTTSGSSS.EEBEBEE- CS
  RNA_pol_Rpb8  87 myGkvYkieeeeskeekvkvyvSfGGLlmaLegdakklsklevdkrvYlLirk 139
                   myG+ Yk+ee ++  + ++vy+SfGGLlm+Leg++++l++l+++ + YlLir+
    CCD24954.1 102 MYGTAYKFEEVSN--DIIAVYYSFGGLLMRLEGNYRNLNTLKQE-NAYLLIRR 151
                   ***********98..9***************************9.******97 PP

>> RNA_pol_RpbG  DNA-directed RNA polymerase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.2   6.1e-05      0.36       7      55 ..      11      62 ..       6      71 .. 0.83
   2 !    7.8   0.0   0.00054       3.2      61     115 ..      96     148 ..      90     151 .] 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.1e-05
  RNA_pol_RpbG  7 kvksieksklkdlkivkikcqne...eielDiiselnifkeedkveviisre 55
                  +v++++ ++ +++  +++++  +   ++ lDi  el  ++++d++++ i  +
    CCD24954.1 11 TVTEVDAGRYNKVCRIEASSTTQeqcKLALDINTELFPVQNQDQLTITIASS 62
                  78999999999998888877655457899******************99876 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00054
  RNA_pol_RpbG  61 dgkdFcghGylvtekeeen.kiitliSlfGllvkisskkdllnelglkvmdkvYlc 115
                   d +d++  G+  + +e  n  i+ + S+ Gll++ + +  + n   lk  +  Yl 
    CCD24954.1  96 DDYDYVMYGTAYKFEEVSNdIIAVYYSFGGLLMRLEGN--YRNLNTLKQ-ENAYLL 148
                   66999999999998887773666789********6655..555555554.445555 PP

>> TcpA  Toxin-coregulated pilus subunit TcpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     4e-05      0.24      24      76 ..       9      63 ..       5      87 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4e-05
                EEEEEETTEE..EEEEEEEEEEE-HHHHHHHHHHHGGG-SEEEEEES---BGGGG CS
        TcpA 24 ifsakdnkaa..nkafaikvsdlskdqckslvssvadlfsfievkerataavadl 76
                if++ + +a   nk   i+ s  +++qck  +   ++lf+  +  + ++++++ l
  CCD24954.1  9 IFTVTEVDAGryNKVCRIEASSTTQEQCKLALDINTELFPVQNQDQLTITIASSL 63
                777776666433999*************************999888777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       599  (0.0334096); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1138.17
//
Query:       CCD24955.1  [L=309]
Description: hypothetical protein NDAI_0E01390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-45  153.4   1.7    9.6e-45  152.2   1.7    1.6  1  DUF2407_C  DUF2407 C-terminal domain
    7.2e-20   71.5   0.3    7.2e-20   71.5   0.3    1.9  2  DUF2407    DUF2407 ubiquitin-like domain
  ------ inclusion threshold ------
      0.013   15.2   0.1      0.021   14.6   0.1    1.2  1  Rep_N      Rep protein catalytic domain like


Domain annotation for each model (and alignments):
>> DUF2407_C  DUF2407 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   1.7   1.6e-48   9.6e-45       1     140 []     168     307 ..     168     307 .. 0.82

  Alignments for each domain:
  == domain 1  score: 152.2 bits;  conditional E-value: 1.6e-48
   DUF2407_C   1 iGFDRLlsaGfseeeieaLRsqFrsiygseetpdtmps.....dleeeeeeelreLEerWidstanaeeaaeaeeegeaakeeensvdseeskanedll 94 
                 iGFDRL+++Gfse+e+e LR+qFr++yg  + ++   +     + e+++++++r+LEe+W++s++n ++ +       +++++ ns+++++ k+n+dll
  CCD24955.1 168 IGFDRLRAVGFSEQEVELLRQQFRATYGDLQNENDDYEqnqhpNNEQNNNNDIRQLEEQWMESGTNGNNGNV----FDTNSDRFNSIPITNFKHNKDLL 262
                 6**************************64333222211234433377777***************7544443....2233334499************* PP

   DUF2407_C  95 iGlliGfflglfalllllkeegllnkrqkmaviaGvlvnlvlglvr 140
                 iG++iGf++g+f+ +ll+k +gl+nkrqkm+++aG++vn+++++v+
  CCD24955.1 263 IGIFIGFTFGIFS-FLLMKIDGLFNKRQKMSMFAGIMVNIIFCFVK 307
                 *************.******************************97 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.3   1.2e-23   7.2e-20       2     103 ..      46     139 ..      45     140 .. 0.85
   2 ?   -3.2   0.1       2.1   1.3e+04      75      80 ..     208     213 ..     185     226 .. 0.49

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 1.2e-23
     DUF2407   2 llviRFsa.sipDleLdip..dpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslklpeesvsdkaekskekgkapvreqeeeriYi 97 
                 ++viRFs+  i+D+eL+i+  + + +++a+L++++Re +p+e++s+rL++I++G lL+ +t+l+ +l++  +        + e++++++r   e++iY+
  CCD24955.1  46 YIVIRFSDeRIKDIELNITnvSLDVINTAWLRRMCRELRPSETTSHRLKFIRNGVLLNLHTNLKFQLSQYFN--------QVESEESDER---ENKIYV 133
                 79*****989*********555566********************************************943........2222333333...689*** PP

     DUF2407  98 hCsiGd 103
                 hC++G+
  CCD24955.1 134 HCIVGT 139
                 *****7 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.1
     DUF2407  75 kaeksk 80 
                 +  +++
  CCD24955.1 208 QHPNNE 213
                 122222 PP

>> Rep_N  Rep protein catalytic domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1   3.6e-06     0.021      11     101 ..      58     147 ..      47     154 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.6e-06
       Rep_N  11 dveeevPGisanfvdwvsdkvWepdsfldldsvdqpeltlaekliavflvkwakklkepegakyflQlEkn.....eegfhlhvlietpgvksrvl 101
                 d+e ++  +s ++++      W     ++l  ++  + +  + +++ +l +  + lk  + ++yf Q+E++     e+ + +h++++t+ +++  l
  CCD24955.1  58 DIELNITNVSLDVINT----AWLRRMCRELRPSETTSHR-LKFIRNGVLLNLHTNLKF-QLSQYFNQVESEesderENKIYVHCIVGTDILTPEEL 147
                 5555555555555443....5777777888888776644.355788899999999999.556*******9888888899***********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1328  (0.0740699); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2355.14
//
Query:       CCD24956.1  [L=325]
Description: hypothetical protein NDAI_0E01400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-62  206.6   0.6      2e-23   82.1   0.1    3.2  3  Mito_carr  Mitochondrial carrier protein
     0.0049   17.2   0.4      0.019   15.3   0.3    2.3  1  Tim17      Tim17/Tim22/Tim23/Pmp24 family
  ------ inclusion threshold ------
       0.43   10.7   3.6         22    5.2   0.2    3.2  3  PT-VENN    Pre-toxin domain with VENN motif


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.1   3.3e-27     2e-23       4      95 ..      10     128 ..       7     130 .. 0.85
   2 !   54.4   0.0   1.4e-18   8.6e-15       8      94 ..     140     221 ..     134     224 .. 0.95
   3 !   67.0   0.0   1.7e-22     1e-18       7      94 ..     232     321 ..     226     323 .. 0.89

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 3.3e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........................CCCSSTTTSCSS.........HHHHHHHHHHHHHHHGGGT CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqt...........................qkksskksksaa.........ildvlkkiykeeGlrglyr 66 
                  +  +++aG++ag+ + +v++PldvvKtr+q+                           ++         a         ++d+l+ki+k+eG++ ly+
  CCD24956.1  10 AFRYQFMAGAIAGISELTVMYPLDVVKTRMQLqisppimaaaaagtsssstiplsssskAA---------AstisenytgVIDCLSKIVKKEGFSRLYK 99 
                 56679***************************99999999999998888887777644422.........0233334566******************* PP

                 THHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
   Mito_carr  67 Gllpnllrvapasalkfvlyetlkrlllk 95 
                 G++  +l+ ap++a kf++++ +++l+++
  CCD24956.1 100 GISSPMLMEAPKRATKFACNDEFQKLYKN 128
                 *************************9865 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 1.4e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   8 ellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++l+G+ ag+++++v+ P+++vK++lq  + + +       +dvlk ++k++G++gly Gl  ++ r+ + +a +f++  ++++ll 
  CCD24956.1 140 SILSGASAGIIESIVIVPFELVKIKLQDVNCKFNG-----PVDVLKDTVKKNGIKGLYNGLESTIWRNGVWNAGYFGIIFQVRELLP 221
                 589*************************9999988.....9*************************************999999986 PP

  == domain 3  score: 67.0 bits;  conditional E-value: 1.7e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaa..ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++l+aG ++g+v+++v tP+dvvK r+q++++   +  +++  ++  + kiy +eG+r+ly+G++p++lr  p  a+ +v++  + +++ 
  CCD24956.1 232 NDLIAGFIGGTVGVMVNTPFDVVKSRIQSDANDMVNGVRKYnwTWPSVVKIYNQEGFRALYKGFVPKVLRLGPGGAVLLVVFTNVMNFFR 321
                 789**************************98885444444456***************************************99999885 PP

>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.3   3.1e-06     0.019      44      92 ..     194     243 ..      14     260 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.1e-06
       Tim17  44 svgkrgpslG.knfgvvgglysgiecaleklRgkediw.nsvaAGaltGal 92 
                  + +  ++ G +n+g++g+++++ e +      k+d   n ++AG+++G +
  CCD24956.1 194 GLESTIWRNGvWNAGYFGIIFQVRELLPTAK-NKNDKNkNDLIAGFIGGTV 243
                 3333344444579*********999888777.7888877**********75 PP

>> PT-VENN  Pre-toxin domain with VENN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.2    0.0037        22      18      49 ..      47      78 ..      43      80 .. 0.91
   2 ?   -0.3   0.2       0.2   1.2e+03      10      22 ..     137     149 ..     134     154 .. 0.70
   3 ?    4.0   0.0    0.0088        53      17      34 ..     233     253 ..     229     257 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0037
     PT-VENN 18 laaGlaGgvvggtladavaGaeagenAVeNNf 49
                + a++a+g+ + ++   ++  +a+ +++  N+
  CCD24956.1 47 IMAAAAAGTSSSSTIPLSSSSKAAASTISENY 78
                68999******999999999999999999887 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.2
     PT-VENN  10 qtvsalstlaaGl 22 
                 q++s ls + aG+
  CCD24956.1 137 QKISILSGASAGI 149
                 6677777777775 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.0088
     PT-VENN  17 tlaaGlaGgvvg...gtlada 34 
                  l+aG +Gg+vg   +t  d+
  CCD24956.1 233 DLIAGFIGGTVGvmvNTPFDV 253
                 599*********777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2315.49
//
Query:       CCD24957.1  [L=401]
Description: hypothetical protein NDAI_0E01410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1286  (0.0717274); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2868.53
//
Query:       CCD24958.1  [L=271]
Description: hypothetical protein NDAI_0E01420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.072   13.0   0.0       0.11   12.4   0.0    1.3  1  HTH_51    Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HTH_51  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     6e-06      0.11      37      78 ..      36      77 ..       8      80 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6e-06
      HTH_51 37 veAFekLgcdlrsakpGqklprikhlpkhkrlvdylYevLee 78
                 e F +L ++l+ + p q l+ri ++ + +   d++Ye+L++
  CCD24958.1 36 DENFPNLKINLQYFTPLQFLSRIVIIMNDQESTDVIYEFLQK 77
                588*************************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2008.11
//
Query:       CCD24959.1  [L=197]
Description: hypothetical protein NDAI_0E01430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   15.5   0.0      0.022   14.6   0.0    1.4  1  LapA_dom  Lipopolysaccharide assembly protein A domain
      0.014   14.1   0.0      0.016   13.9   0.0    1.1  1  ATG22     Vacuole effluxer Atg22 like
      0.045   13.9   0.1      0.072   13.2   0.1    1.3  1  COX6C     Cytochrome c oxidase subunit VIc


Domain annotation for each model (and alignments):
>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   3.6e-06     0.022      16      53 ..      64     102 ..      59     109 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.6e-06
    LapA_dom  16 elpLsllllvafgiGallgwllsl.wsylrlrrelrrlk 53 
                 + +++l++l+++ +Ga+l +  s+ +s +++++ + + +
  CCD24959.1  64 KTSIYLVILIVVCLGAILLFSPSFlPSFFKNKKTNGSNT 102
                 7899****************9999779999999887665 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.6e-06     0.016     130     173 ..      66     126 ..      52     163 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.6e-06
       ATG22 130 gavlyivsntcfgaslvllnsfLPllvredpelqeaeeeeeee...................e 173
                    l+i+  +c ga+l ++ sfLP + +++++    +++ +++                    
  CCD24959.1  66 SIYLVILIVVCLGAILLFSPSFLPSFFKNKKTN--GSNTFKRKtlnitgetlisntnkqlqfS 126
                 55799**********************999887..3333333334666777777755444441 PP

>> COX6C  Cytochrome c oxidase subunit VIc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.2e-05     0.072       3      33 ..      53      83 ..      51      94 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
       COX6C  3 aKPqmrgllakrlkrhlvvafvlslgvaaay 33
                +KP  r ll+k++ + lv+ +v++lg+ +++
  CCD24959.1 53 PKPYHRRLLTKKTSIYLVILIVVCLGAILLF 83
                8**************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1138  (0.0634726); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1502.39
//
Query:       CCD24960.1  [L=892]
Description: hypothetical protein NDAI_0E01440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-59  198.5   0.3    5.1e-58  195.7   0.1    2.2  2  RFC1          Replication factor RFC1 C terminal domain
    4.1e-12   46.7   0.0    1.3e-11   45.0   0.0    1.9  1  AAA           ATPase family associated with various cellular 
    8.2e-12   45.3   0.0    2.4e-11   43.9   0.0    1.9  1  BRCT          BRCA1 C Terminus (BRCT) domain
    3.4e-05   23.9   0.0    9.4e-05   22.4   0.0    1.8  1  Rad17         Rad17 P-loop domain
    4.2e-05   23.4   0.0    9.8e-05   22.2   0.0    1.6  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
    0.00035   21.0   0.0     0.0016   18.8   0.0    2.1  2  AAA_16        AAA ATPase domain
    0.00036   20.7   0.0     0.0011   19.2   0.0    1.8  1  AAA_33        AAA domain
     0.0011   19.2   0.0     0.0037   17.6   0.0    1.9  1  AAA_assoc_2   AAA C-terminal domain
     0.0017   18.6   0.0     0.0093   16.2   0.0    2.3  2  AAA_22        AAA domain
     0.0039   17.7   0.0      0.011   16.3   0.0    1.7  1  AAA_18        AAA domain
  ------ inclusion threshold ------
      0.012   16.1   0.0      0.012   16.1   0.0    2.9  3  AAA_17        AAA domain
      0.012   16.0   0.0      0.041   14.3   0.0    2.0  1  RNA_helicase  RNA helicase
      0.046   13.8   0.0       0.26   11.3   0.0    2.4  1  AAA_14        AAA domain
      0.066   13.2   0.1       0.21   11.6   0.0    1.9  2  AAA_5         AAA domain (dynein-related subfamily)


Domain annotation for each model (and alignments):
>> RFC1  Replication factor RFC1 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       0.6   7.7e+02      91     130 ..     530     571 ..     499     586 .. 0.75
   2 !  195.7   0.1     4e-61   5.1e-58       1     157 []     650     805 ..     650     805 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.6
                 HHHS---------HHHHHHTTT--SHHHHH..HHHHH-X... CS
        RFC1  91 klvkpLkeegkdgveevielmdeysLtked..vdslvelslv 130
                  ++++L ++ +  + ++i+l+++ s t ++   ++++e+s+ 
  CCD24960.1 530 NIIDKLVQTTRGDIRQIINLLSTISKTTKNigHENIQEISKA 571
                 577788885555599999999887765444378888888765 PP

  == domain 2  score: 195.7 bits;  conditional E-value: 4e-61
                 HHHHHHHHHHHTT.SS-GGGHHHHHHHHTHHHHHTT-EE-SS-----SHHHHHHHHHHHHHHHHHHHTTTTT------HHHHHTTTHHHHHHHHS---- CS
        RFC1   1 isdgDlvdkkirs.eqnWsLlpthavlssvlPaslvrgslegrisFpswLGknSktnKnkRllqelqshlrlktsaskselrldylpllkkklvkpLke 98 
                 is +Dlv+kkirs eq W Llp+havlssv+P+s+++g+++gri+F++wLG+nSktnK+ Rllqelq+h+rl+ts++k  lrl ylp++k++l++pL +
  CCD24960.1 650 ISAADLVEKKIRSsEQLWGLLPLHAVLSSVRPSSMIAGRMTGRINFSAWLGQNSKTNKYYRLLQELQYHTRLSTSTDKLGLRLAYLPTFKRRLLEPLLH 748
                 89************************************************************************************************* PP

                 -----HHHHHHTTT--SHHHHHHHHHH-X...XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        RFC1  99 egkdgveevielmdeysLtkedvdslvelslvkgekkkedplkkidtkvKaaftrkynk 157
                 +g++gv++vielmd+y+Lt+ed+d++++++++  ++ +  +lkki+t+vK+aftrkyn+
  CCD24960.1 749 KGAEGVSDVIELMDDYYLTREDWDTIMDFMIG--PDITTLQLKKIPTSVKTAFTRKYNS 805
                 *****************************766..66677899***************95 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   1.1e-14   1.3e-11       2      98 ..     376     478 ..     375     506 .. 0.76

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 1.1e-14
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.......STTHHHHHHHHHHHHHHHTS.......TSEEEEEETGGGHHHHHTTCCCHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellsk.......yvgesekkirelfkeakeka.......kpsilfiDEidalaksrsgseseeeervv 86 
                 +lyGppG+GKT++a+ vakelg ++le ++s+++sk           +++++ ++fk+   ++       k+ ++++DE+d + + +        +  v
  CCD24960.1 376 MLYGPPGIGKTTAAHLVAKELGYDVLEQNASDVRSKsllnagvKNALGNMSVIGYFKNQPGMNvdingngKKFVIIMDEVDGMSGGD--------RGGV 466
                 79********************************99999886633334555666666654444667777677***********8777........5556 PP

                 HHHHHHHHHTTT CS
         AAA  87 nqLlteldgvkk 98 
                  qL ++  + ++
  CCD24960.1 467 GQLAQFCRKTTT 478
                 666666555555 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   1.8e-14   2.4e-11       3      78 ..     181     255 ..     179     256 .. 0.96

  Alignments for each domain:
  == domain 1  score: 43.9 bits;  conditional E-value: 1.8e-14
                 TTTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEEESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHH CS
        BRCT   3 ellfhgckfvitgvldnftrdeleelikehGGkvttevskktthlvvgepesrslkylealklnipivheewlldc 78 
                 ++++ g+++v+tgvl n +r+ +e+++k +G++vt+++s +t+ +v g+  ++ +k+++ ++l+i+ ++e+ + ++
  CCD24960.1 181 PNCLLGLTIVFTGVLPNLEREVAESIAKRYGARVTKSISGRTSVVVLGDE-AGPKKLEKIKQLKIKAIDEDGFRQL 255
                 799***********************************************.*******************998776 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   7.3e-08   9.4e-05       4      86 ..     319     412 ..     316     456 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 7.3e-08
       Rad17   4 denelWfekykPekaeelavhkkkieevkewlkadvLesrkkr.............iLLisGPsGCgkstvvkvLskelgiklrewlnpvslkepd 86 
                 +e +lW  ky P     +   k  + ++k+wl     ++++                 ++ GP+G gk+t+ + ++kelg+++ e  n+  +++ +
  CCD24960.1 319 EEDKLWTVKYAPTSSVGICGNKTSVTKLKNWLTNWETNKKN-DfktagrdgtgifrSAMLYGPPGIGKTTAAHLVAKELGYDVLEQ-NASDVRSKS 412
                 57789***************************876555443.135678899996655699*********************99774.444444444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   7.6e-08   9.8e-05      36      70 ..     375     409 ..     357     428 .. 0.78

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 7.6e-08
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPvle 70 
                  +lyGpPG+Gktt a+++akelg ++    +  + 
  CCD24960.1 375 AMLYGPPGIGKTTAAHLVAKELGYDVLEQNASDVR 409
                 69*********************988666555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.3e-06    0.0016      20      64 ..     366     409 ..     358     440 .. 0.75
   2 ?   -2.5   0.0       4.7     6e+03     132     145 ..     444     456 ..     424     482 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.3e-06
      AAA_16  20 rsgrp..elvllsGesGvGKsslvrellralekdggiflrgkcdqle 64 
                 r+g++  ++ +l+G++G+GK++ +  ++++l  d   +l++++ + +
  CCD24960.1 366 RDGTGifRSAMLYGPPGIGKTTAAHLVAKELGYD---VLEQNASDVR 409
                 44555779************************99...6777777763 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.7
      AAA_16 132 rderplvlvlDdlq 145
                 + ++++v+++D+++
  CCD24960.1 444 N-GKKFVIIMDEVD 456
                 4.556******999 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   8.5e-07    0.0011       3      32 ..     376     405 ..     375     458 .. 0.87

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 8.5e-07
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssdt 32 
                 +l G+pG GK+t a+ ++k+lg+ +l++++
  CCD24960.1 376 MLYGPPGIGKTTAAHLVAKELGYDVLEQNA 405
                 789***********************9987 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.9e-06    0.0037       3      51 ..     523     565 ..     522     584 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.9e-06
                  X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXX CS
  AAA_assoc_2   3 kklkleddalealaeladGDaRkaLnlLElaaeaaeak..egkieitledl 51 
                  +k+kl++++++ l+++  GD+R+++nlL ++ +++++   e        ++
   CCD24960.1 523 EKFKLDPNIIDKLVQTTRGDIRQIINLLSTISKTTKNIghE--------NI 565
                  5789****************************999863322........22 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       5.5     7e+03      76     131 ..     208     260 ..     189     262 .. 0.62
   2 !   16.2   0.0   7.3e-06    0.0093       7     131 ..     374     486 ..     373     492 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5.5
      AAA_22  76 eellealeqalraravielliiDEaqhlrseealeeLrsllnlsrkgvqliLvGtp 131
                 +++ +++++ ++ r   ++++ DEa    + e +++L++ +  +++g++ ++ G+p
  CCD24960.1 208 KRYGARVTKSISGRTS-VVVLGDEAGPK-KLEKIKQLKIKAI-DEDGFRQLVSGMP 260
                 5555777777777777.77777777665.5566666633322.4777777777777 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 7.3e-06
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrs 105
                 + +++G++G+GKTt +  ++++l         + +v++ +++   s + l   + +alg+     +  + +    +  + + ++   ++i DE++ + s
  CCD24960.1 374 SAMLYGPPGIGKTTAAHLVAKEL---------GYDVLEQNASDVRSKSLLNAGVKNALGNMSVI-GYFKNQPGMNVDINGNGKKF--VIIMDEVDGM-S 459
                 5789*******************.........9*******999999999999999999976666.55555555555555555655..9999999999.4 PP

      AAA_22 106 ...eealeeLrsllnlsrkgvqliLvGtp 131
                       + +L ++    ++ +++iL+  +
  CCD24960.1 460 ggdRGGVGQLAQFCR--KTTTPMILICNE 486
                 445777777777788..888888888665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.5e-06     0.011       2      44 ..     376     421 ..     376     453 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.5e-06
      AAA_18   2 lltGtpGvGKttlakeLskrlgf...gvnlrdvakenglllevdpe 44 
                 +l G+pG GKtt a+ ++k+lg+    +n +dv +++ l  +v ++
  CCD24960.1 376 MLYGPPGIGKTTAAHLVAKELGYdvlEQNASDVRSKSLLNAGVKNA 421
                 589*********************9*99999999988888777766 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.4   8.2e+03      69      89 ..      46      66 ..      28     104 .. 0.59
   2 ?   -1.8   1.3         3   3.9e+03      40      73 ..     275     308 ..     259     326 .. 0.51
   3 ?   16.1   0.0     9e-06     0.012       1      32 [.     378     411 ..     378     438 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.4
                HHSSEEEEEE-SEEEETTEEE CS
      AAA_17 69 akkkgvlvdghprikeqagfl 89
                ++++++++++ +r k++  + 
  CCD24960.1 46 SDEDDIIIKKPARKKTKTTAE 66
                355556666666655554432 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3
                 HSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSE CS
      AAA_17  40 akardemrklpleekkelqkeaaekiaeeakkkg 73 
                 +++++e + +++ e+   +++a+++  ++ak +g
  CCD24960.1 275 KREQEEAKAVQEAEELLKTENAKKERIKMAKGSG 308
                 3344555555555555555566554444443333 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 9e-06
                 EE-TTSSHHHHHHHHHHHHTEEEE..EHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthl..saGdllre 32 
                 +G+PG GK+t++  +++++g+ +l  +a+d+  +
  CCD24960.1 378 YGPPGIGKTTAAHLVAKELGYDVLeqNASDVRSK 411
                 7**********************95556776555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   3.2e-05     0.041       2      34 ..     376     408 ..     375     415 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 3.2e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsv 34 
                   +lyGp+g+GK+t+a+ +ak+l  ++ ++++++v
    CCD24960.1 376 MLYGPPGIGKTTAAHLVAKELGYDVLEQNASDV 408
                   69*******************988866666655 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.26       6      74 ..     376     456 ..     372     467 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
      AAA_14   6 vitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe........kllelilek.lke......ekktylflDEiq 74 
                 ++ G+  +GKTt ++ ++kel     ++l+ n  d r k+l +          +++ +++++  ++       kk ++++DE+ 
  CCD24960.1 376 MLYGPPGIGKTTAAHLVAKELG---YDVLEQNASDVRSKSLLNAGvknalgnmSVIGYFKNQpGMNvdingnGKKFVIIMDEVD 456
                 7899**********99999998...7777777777777554432222334445788888888633478889667777999**96 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00016      0.21       3      34 ..     376     407 ..     374     459 .. 0.69
   2 ?   -2.8   0.1       4.6   5.9e+03      13      47 ..     683     717 ..     683     726 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00016
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--T CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltr 34 
                 +L GppG+gK++ a  +a+ l+  v++ + ++
  CCD24960.1 376 MLYGPPGIGKTTAAHLVAKELGYDVLEQNASD 407
                 89*****************9998887755554 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4.6
                 HHHHHHGGGGBS--EEEEE--TT--HHHHH--B-- CS
       AAA_5  13 selaerlaaalnreveyvqltrdtteedlkgrrei 47 
                 s++a r+  ++n + +  q+++  ++  l++++++
  CCD24960.1 683 SMIAGRMTGRINFSAWLGQNSKTNKYYRLLQELQY 717
                 68899999999999999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (892 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1293  (0.0721178); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 6083.55
//
Query:       CCD24961.1  [L=518]
Description: hypothetical protein NDAI_0E01450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-07   29.2   1.6    1.5e-06   27.9   1.6    1.8  1  GRAB            GRIP-related Arf-binding domain
    0.00072   19.6  22.2    0.00072   19.6  22.2    4.9  4  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
  ------ inclusion threshold ------
        6.4    7.3  13.0      0.083   13.3   1.9    3.2  3  Telomere_reg-2  Telomere length regulation protein


Domain annotation for each model (and alignments):
>> GRAB  GRIP-related Arf-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   1.6   2.4e-10   1.5e-06       1      19 []     434     452 ..     434     452 .. 0.92

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2.4e-10
        GRAB   1 sseenVDKrLISNLllsFL 19 
                 s +e+VDK+LISNLl+sF+
  CCD24961.1 434 SDSESVDKELISNLLISFV 452
                 568***************7 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0  17.9       2.4   1.4e+04      72     137 ..     106     173 ..      67     176 .. 0.59
   2 ?   -0.4  25.3      0.18     1e+03       5     126 ..     153     271 ..     150     277 .. 0.39
   3 !   19.6  22.2   1.2e-07   0.00072      36     137 ..     265     366 ..     261     369 .. 0.95
   4 ?    1.2  10.6     0.057   3.4e+02      58     112 ..     368     425 ..     363     443 .. 0.79

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.4
  CENP-F_leu_zip  72 eldLvalrsekeeLekelqkkqervseLeslnss..lenlleekEqekvqmkeeskaaveeLqtqlke 137
                       ++++l+ e  +L+kel++ qe+     s+ ss  + ++ + +E++k ++ e+ k++ + +++q + 
      CCD24961.1 106 DEQIEKLQTEMADLKKELKDTQEKLAKSSSTSSSpsVDEMEKSEENDKNEELEKLKEERDHFESQYNS 173
                     33466777777777777777777776554444431144444444555667777777777776666665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.18
  CENP-F_leu_zip   5 klhvlekLKes....erkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqer 95 
                     k++ lekLKe     e++ +sL +++ +++   + ++e+           +  +e +++++ e +++  +l+ +++ +++ek eL+  + + +++
      CCD24961.1 153 KNEELEKLKEErdhfESQYNSLLNRISSMKNVFNKMKES-----------QRDLEIVQDQVAEYESQNLKLKNKVELITKEKTELATTMVTLNKE 236
                     555566666641111234445555555555443333333...........333333333333333333333333333334444444444444444 PP

  CENP-F_leu_zip  96 vseLeslnsslenlleekEqe....kvqmkeeska 126
                      s+Le   + len   + E++    k+q+ke+s++
      CCD24961.1 237 LSSLEDKYEALENKSMKYEKQlkdfKRQEKENSNT 271
                     44444444444443333333333334555555544 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 1.2e-07
  CENP-F_leu_zip  36 seenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnsslenlleekEqekvqmkeeskaavee 130
                      +en +  + + E  ++e e l ++++el   l + ++d+v+l+ ekee+++ l  + ++    e++  +l++ lee+E++ +q   e  ++++ 
      CCD24961.1 265 EKENSNTYTHQLEGYRKEKELLDTQLQELLIILDNNKQDIVNLKDEKEEMKQALHASENEKTAFEESLQQLSSKLEEQENDYAQSLREKAQEIKA 359
                     4678888999************************************************************************************* PP

  CENP-F_leu_zip 131 Lqtqlke 137
                     L++ql+ 
      CCD24961.1 360 LSVQLES 366
                     ****986 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.057
  CENP-F_leu_zip  58 keeieelaeelreleldLvalr...sekeeLekelqkkqervseLeslnsslenllee 112
                      ++ + l++el+ l+ d+++l+   s k++Le+e +++  ++  L      l++ l +
      CCD24961.1 368 ADKNKALQTELQSLKDDIQSLKensSLKDKLEQETKEQALQIGKLRHESIVLNEHLTK 425
                     5667789999999999999998665679999999999999999998888777777765 PP

>> Telomere_reg-2  Telomere length regulation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.9   1.4e-05     0.083      11      59 ..     198     247 ..     168     258 .. 0.88
   2 ?   -1.6   1.1       0.6   3.6e+03      17      43 ..     325     355 ..     288     400 .. 0.60
   3 ?   -0.5   0.0      0.28   1.7e+03      21      62 ..     420     463 ..     405     469 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.4e-05
  Telomere_reg-2  11 Lrdk.ddyekieaaLksaeeLirrkadeveenaveLataLltledkfdie 59 
                      +d+  +ye++++ Lk+  eLi ++++e++  +v L + L +ledk++  
      CCD24961.1 198 VQDQvAEYESQNLKLKNKVELITKEKTELATTMVTLNKELSSLEDKYEAL 247
                     45666899**************************************9643 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.6
  Telomere_reg-2  17 yekieaaLksaeeLirrkad....eveenav 43 
                        +e++L+++++ ++++++     ++e a+
      CCD24961.1 325 KTAFEESLQQLSSKLEEQENdyaqSLREKAQ 355
                     3444555554444444333323333333444 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.28
  Telomere_reg-2  21 eaaLksaeeLirrkad..evee.naveLataLltledkfdienfe 62 
                     ++ L+ a  +++r++d   v++ + ++L+ +++++    d ++fe
      CCD24961.1 420 NEHLTKAMAMLKRSSDseSVDKeLISNLLISFVSIPRA-DPKKFE 463
                     45677777777777777656656888888888877554.666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4344  (0.242289); expected 358.6 (0.02)
Passed bias filter:                      730  (0.0407162); expected 358.6 (0.02)
Passed Vit filter:                       326  (0.0181828); expected 17.9 (0.001)
Passed Fwd filter:                       131  (0.0073066); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.63u 0.39s 00:00:03.02 Elapsed: 00:00:00.65
# Mc/sec: 2408.10
//
Query:       CCD24962.1  [L=194]
Description: hypothetical protein NDAI_0E01460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-22   79.9   5.7    2.4e-22   79.6   5.7    1.1  1  YqeY           Yqey-like protein
  ------ inclusion threshold ------
       0.01   16.2   1.9      0.031   14.7   1.0    2.2  2  FRB_dom        FKBP12-rapamycin binding domain
       0.03   14.4   0.1       0.12   12.4   0.0    1.9  2  DUF3489        Protein of unknown function (DUF3489)
      0.034   14.5   4.9       0.43   11.0   0.0    2.8  2  DNTTIP1_dimer  DNTTIP1 dimerisation domain
        0.5   10.9   4.5        5.5    7.5   0.2    2.6  3  PP2C_C         Protein serine/threonine phosphatase 2C, C-ter


Domain annotation for each model (and alignments):
>> YqeY  Yqey-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   5.7   6.6e-26   2.4e-22       3     125 ..      37     165 ..      35     185 .. 0.88

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 6.6e-26
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTTS...S--HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHGGGS--..---HHHH CS
        YqeY   3 klkedlkeamkakdkerlstlrllkaaikqeevderk...elsdeevlkvlakevkqRresieefekagRedlaekekaEievleeYlPe..qlseeei 96 
                 +lk+dlkeam akd+ + +t+r +++++k+ee+++ k   +l++  + +  ++ + qR esie+++k++R+dl+++e++E+++l++Y  +    +e+ei
  CCD24962.1  37 NLKKDLKEAMSAKDEVKKTTIRSILSTVKNEEIANAKndsTLNEFSLFDTFSRLITQRMESIENYKKNDRQDLVNNEQKELDILKDYRAKlpVATEDEI 135
                 799*******************************9998878**********************************************654224699*** PP

                 HHHHHHHHHHTT--.BGGGHHHHHHHHHHH CS
        YqeY  97 ealvkeaiaevgae.smkdmGkvmkalkpk 125
                 +a v + +++++++ +  ++ +vm++l  k
  CCD24962.1 136 NAKVLALLNKLKETqEGLKINQVMSKLDWK 165
                 **********98762556899999988655 PP

>> FRB_dom  FKBP12-rapamycin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.26   9.2e+02      20      50 ..      18      48 ..      10      55 .. 0.70
   2 ?   14.7   1.0   8.6e-06     0.031      17      84 ..      42     111 ..      34     119 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.26
     FRB_dom 20 Asrlyfgeknveamlklleplhellekgpet 50
                 sr +++ +++ea ++ + +l++ l++  + 
  CCD24962.1 18 TSRRFLRFNSTEAYTNAISNLKKDLKEAMSA 48
                6777888888888888888888887775444 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 8.6e-06
     FRB_dom  17 LeeAsrly..fgeknveamlklleplhellekgpetlreasFaqafgreLkeaeewlkkykkteneedln 84 
                 L+eA+ +    ++  ++++l+++++      k+ +tl+e s   +f+r +++  e +++ykk+ +++ +n
  CCD24962.1  42 LKEAMSAKdeVKKTTIRSILSTVKNEEIANAKNDSTLNEFSLFDTFSRLITQRMESIENYKKNDRQDLVN 111
                 66665544003455568888888888777777889*************************9998887766 PP

>> DUF3489  Protein of unknown function (DUF3489)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.63   2.3e+03      34      46 ..      53      65 ..      43      75 .. 0.71
   2 ?   12.4   0.0   3.4e-05      0.12      11      49 ..     138     181 ..     131     188 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.63
     DUF3489 34 qahtvRgalagal 46
                ++ t+R  l+ ++
  CCD24962.1 53 KKTTIRSILSTVK 65
                6778898888765 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.4e-05
     DUF3489  11 rlialL....rrpeGatiaeimeatgWqahtv..Rgalagalkkk 49 
                 +++alL    +++eG  i+++m++++W++  +  R+  a  +kk 
  CCD24962.1 138 KVLALLnklkETQEGLKINQVMSKLDWKTIPTewRAS-ANSIKKS 181
                 5555552222579***************988888888.6666665 PP

>> DNTTIP1_dimer  DNTTIP1 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.43      28      63 ..      29      65 ..       2      67 .. 0.75
   2 ?    2.8   2.7     0.041   1.5e+02      31      61 ..      95     145 ..      85     150 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
  DNTTIP1_dimer 28 kvfkpAveNireNlgeevvteadvqklc.rsiLeeak 63
                   + +++A+ N+++ l e +  +++v+k   rsiL  +k
     CCD24962.1 29 EAYTNAISNLKKDLKEAMSAKDEVKKTTiRSILSTVK 65
                   78999**********99999****9987799999888 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.041
  DNTTIP1_dimer  31 kpAveNireNlgee....................vvteadvqklcrsiLee 61 
                    ++ +eN ++N  ++                    v te+++++ + ++L++
     CCD24962.1  95 MESIENYKKNDRQDlvnneqkeldilkdyraklpVATEDEINAKVLALLNK 145
                    67899*****99996666666666666666666666666666666666665 PP

>> PP2C_C  Protein serine/threonine phosphatase 2C, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0015       5.5      27      61 ..      37      71 ..      27      79 .. 0.90
   2 ?   -2.5   0.1       2.1   7.4e+03      31      45 ..      94     107 ..      87     121 .. 0.53
   3 ?    4.9   0.1    0.0098        35      25      61 ..     132     169 ..     124     187 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0015
      PP2C_C 27 kleervkeiiekeekkeeldlekvlkvLasedipn 61
                +l++ +ke+++++++ +++++ ++l+++++e+i n
  CCD24962.1 37 NLKKDLKEAMSAKDEVKKTTIRSILSTVKNEEIAN 71
                79999**************************9987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.1
      PP2C_C  31 rvkeiiekeekkeel 45 
                 r++ i +  +k+++ 
  CCD24962.1  94 RMESIEN-YKKNDRQ 107
                 4444444.3333332 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0098
      PP2C_C  25 dekleervkeiie.keekkeeldlekvlkvLasedipn 61 
                 +++++++v  +++  +e +e l++++v++ L  + ip 
  CCD24962.1 132 EDEINAKVLALLNkLKETQEGLKINQVMSKLDWKTIPT 169
                 677888888888866778999*********98888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1931  (0.107703); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1369.54
//
Query:       CCD24963.1  [L=289]
Description: hypothetical protein NDAI_0E01470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       520  (0.0290033); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2199.97
//
Query:       CCD24964.1  [L=247]
Description: hypothetical protein NDAI_0E01480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-19   69.1   0.0    3.7e-19   68.5   0.0    1.3  1  YEATS     YEATS family
    2.7e-06   27.5   0.0    5.4e-06   26.5   0.0    1.5  1  BET       Bromodomain extra-terminal - transcription regulati


Domain annotation for each model (and alignments):
>> YEATS  YEATS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   4.1e-23   3.7e-19       1      79 [.      29     109 ..      29     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 68.5 bits;  conditional E-value: 4.1e-23
       YEATS   1 thkWtvavrsa.asddl..sefikkVqFkLhetyanptrvvekpPFevtetGwGeFeiqikiffkpeaekpltlehdLklhp 79 
                 +++W++ +  + ++ ++  +++++kV+++Lh+t+ np+r++++ PF+++e+GwG F ++i++f+ ++   + +++hdL++ +
  CCD24964.1  29 MRQWSIEIVLLdKEGNEipATILDKVTYHLHPTFVNPNRTFTEIPFRIEEQGWGGFPLNISLFLLEK-GGERKVTHDLNFLQ 109
                 589*******966555469**********************************************77.4458999***9976 PP

>> BET  Bromodomain extra-terminal - transcription regulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     6e-10   5.4e-06       9      64 .]     182     242 ..     178     242 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 6e-10
         BET   9 eLseeInkLpgeklgrvveIIqere.pelq....sdedEiElDidaldddtLreLekyvkk 64 
                 +L+ +++kL++++l +vv++++++  pe+      +e+E  +D+ +l++d+L  L++yv+k
  CCD24964.1 182 KLAFGLTKLSEDDLVGVVQMVSDSWtPEESaannVEEGEFVFDLFTLKEDVLKNLWDYVMK 242
                 788899******************996655543466788999999**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1792.62
//
Query:       CCD24965.1  [L=358]
Description: hypothetical protein NDAI_0E01490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-19   69.6   0.1    8.7e-19   67.3   0.0    2.1  2  YEATS     YEATS family


Domain annotation for each model (and alignments):
>> YEATS  YEATS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   4.8e-23   8.7e-19       2      80 ..     155     235 ..     154     236 .. 0.90
   2 ?   -0.4   0.0     0.062   1.1e+03      21      43 ..     268     291 ..     251     313 .. 0.63

  Alignments for each domain:
  == domain 1  score: 67.3 bits;  conditional E-value: 4.8e-23
       YEATS   2 hkWtvavrsa.asddl..sefikkVqFkLhetyanptrvvekpPFevtetGwGeFeiqikiffkpeaekpltlehdLklhpe 80 
                 +kW+v ++ + ++ ++  ++++k++++ Lh+t+anp+r +++pPF++ e+GwGeFe +i + + ++a  ++ ++hdL++++e
  CCD24965.1 155 RKWRVEICLLdKEGNEieASILKSCTYYLHPTFANPVRKISSPPFTLDEQGWGEFEFKIICNLIEQA-GKFIVFHDLQFSEE 235
                 79********665554589*********************************************775.6799******9875 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.062
       YEATS  21 kkVqFkLhet.yanptrvvekpPF 43 
                 ++V   +h++ y+ +++ +++ P+
  CCD24965.1 268 ENVDELIHKEiYKAHSKWIKEVPY 291
                 555555553314445566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       510  (0.0284455); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2786.52
//
Query:       CCD24966.1  [L=428]
Description: hypothetical protein NDAI_0E01500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-27   95.0  25.4      6e-05   23.7   0.4    7.3  7  WD40         WD domain, G-beta repeat
    3.8e-11   43.1   0.2       0.15   12.3   0.0    4.8  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    0.00093   18.6   0.4       0.22   10.8   0.0    2.6  2  WD40_like    WD40-like domain
     0.0036   16.3   1.5        4.6    6.1   0.0    3.7  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
  ------ inclusion threshold ------
      0.016   14.9   1.7       0.03   14.0   1.7    1.4  1  LXG          LXG domain of WXG superfamily
       0.08   12.4   2.3       0.11   11.9   2.3    1.1  1  Golgin_A5    Golgin subfamily A member 5
        0.2   11.9   5.1       0.52   10.6   5.1    1.6  1  DUF5082      Domain of unknown function (DUF5082)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   4.2e-07    0.0011       2      38 .]      81     118 ..      80     118 .. 0.93
   2 !   10.0   0.0   0.00053       1.3      12      36 ..     134     158 ..     125     160 .. 0.82
   3 !   15.3   1.3   1.1e-05     0.027       3      38 .]     171     206 ..     169     206 .. 0.89
   4 !   14.5   0.0     2e-05     0.051       3      38 .]     212     260 ..     210     260 .. 0.85
   5 !   19.4   0.2   5.6e-07    0.0014      11      38 .]     275     302 ..     266     302 .. 0.88
   6 ?    5.9   0.2      0.01        26      11      38 .]     355     382 ..     341     382 .. 0.85
   7 !   23.7   0.4   2.3e-08     6e-05       2      38 .]     387     424 ..     386     424 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.2e-07
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++ tl+GH + ++ +++s +++ ++s+s Dg   iWd
  CCD24966.1  81 KPTLTLRGHnNKISQFKWSLNSKSILSSSQDGFMLIWD 118
                 67889****777*************************9 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00053
                 SEEEEEEETTSSEEEEEETTSEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvri 36 
                 +v s+a sp+g+++asG+ ++++ i
  CCD24966.1 134 WVLSCAISPSGKLVASGGLNNNCTI 158
                 5899*************97776655 PP

  == domain 3  score: 15.3 bits;  conditional E-value: 1.1e-05
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  + +++GH + ++++ f ++++ ++s++ D t+ +W+
  CCD24966.1 171 VVSIFKGHtCYISDIEFWDNSHVITSSG-DMTCALWN 206
                 6789****777*********9*999889.*******8 PP

  == domain 4  score: 14.5 bits;  conditional E-value: 2e-05
                 EEEEEESS.SSEEEEE............EETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtsla............fspdgawlasGsdDgtvriWd 38 
                  lr+++ H ++v +la             s d++ +as++ Dg  +iWd
  CCD24966.1 212 RLREYSDHlGDVLALAmpsrqgatetdgESNDSSIFASCGSDGYTYIWD 260
                 5899*****99******999999999996666666777755*******9 PP

  == domain 5  score: 19.4 bits;  conditional E-value: 5.6e-07
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 s+vts++f +dg+ +++GsdDg + ++d
  CCD24966.1 275 SDVTSIKFFKDGNSIITGSDDGIINMFD 302
                 57**********************9987 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.01
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++v sl+fs +g+++ ++  D  + iWd
  CCD24966.1 355 QGVVSLDFSGSGRLMYACYTDIGCVIWD 382
                 3588**************8899999998 PP

  == domain 7  score: 23.7 bits;  conditional E-value: 2.3e-08
                 EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 + +++l+GHs+ ++++ +spdg  ++++s+D t +iW+
  CCD24966.1 387 EIVGKLDGHSDrISGVETSPDGLAVCTASWDSTMKIWS 424
                 678899***556*************************5 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00073       1.9      30      80 ..      84     132 ..      59     139 .. 0.78
   2 !    6.1   0.0    0.0055        14      41      75 ..     135     169 ..     130     206 .. 0.86
   3 !   12.3   0.0     6e-05      0.15      37      81 ..     273     317 ..     258     335 .. 0.89
   4 !   10.4   0.0   0.00024      0.62      38      85 ..     354     400 ..     345     419 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00073
  ANAPC4_WD40  30 wtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                   tl   ++++++++++W+ + k +  + +dg + + d+ +g   ++++ +s
   CCD24966.1  84 LTL--RGHNNKISQFKWSLNSKSILSSSQDGFMLIWDSATGLKQNAIPLDS 132
                  445..68899****************************9997766666655 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0055
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  v s a +p+gkl a +  ++++ ++ +++++ v++
   CCD24966.1 135 VLSCAISPSGKLVASGGLNNNCTIYRVSKENRVQQ 169
                  55667789*******************99988876 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 6e-05
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +ds v+s+++ +dg+ +  + +dg ++++d  s   + s+s ++ 
   CCD24966.1 273 SDSDVTSIKFFKDGNSIITGSDDGIINMFDLRSDCSIASYSLQQG 317
                  6899*****************************999999988876 PP

  == domain 4  score: 10.4 bits;  conditional E-value: 0.00024
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  ++ v sL ++ +g+l+   y d  + + d  +g++v +l+ +s++ ++
   CCD24966.1 354 NQGVVSLDFSGSGRLMYACYTDIGCVIWDLLKGEIVGKLDGHSDR-IS 400
                  67799**********************************999996.43 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   8.8e-05      0.22       5      62 ..     137     199 ..     134     216 .. 0.71
   2 !    5.1   0.1    0.0047        12      44      78 ..     276     311 ..     240     320 .. 0.49

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.8e-05
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesv..sivesfedSvifv...klldddlilvvtlD 62 
                 s  is+ g+l++ Gg +++ct++ +  ++ v   +v  f+    ++   ++ d+ +++  + D
  CCD24966.1 137 SCAISPSGKLVASGGLNNNCTIYRVSKENRVqqNVVSIFKGHTCYIsdiEFWDNSHVITSSGD 199
                 67799******************9987655422467777766666511156677777766655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0047
   WD40_like  44 Svifvklldd.dlilvvtlDGtillslleneeeven 78 
                  v  +k+ +d + i+ ++ DG i + +l+ + ++ +
  CCD24966.1 276 DVTSIKFFKDgNSIITGSDDGIINMFDLRSDCSIAS 311
                 344444443313455555555555555555444444 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.19   4.8e+02     146     210 ..      47     113 ..      24     134 .. 0.56
   2 ?    2.8   0.1     0.018        45     189     248 ..     134     192 ..      47     215 .. 0.82
   3 !    3.7   0.1    0.0097        25     186     216 ..     273     303 ..     258     311 .. 0.87
   4 !    6.1   0.0    0.0018       4.6     183     214 ..     391     423 ..     382     426 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.19
    Ge1_WD40 146 llvltrgdkaeiwsvdmiaskygsge.lsveeieegllkieehs.liveaafspdGtalatasedGe 210
                 l   +++ k++i + d  +   ++ + ++++ + + +l ++ h  +i++  +s +  ++  +s+dG+
  CCD24966.1  47 LYTQVNKIKSKIQDADLFQISQQIEPlIKPHINLKPTLTLRGHNnKISQFKWSLNSKSILSSSQDGF 113
                 3333444444444444444333333312334444455555555445666666666666666666665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.018
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhk 248
                  + + a+sp G  +a    +     ++v  e++ ++  +  +k h    +s + f dn +
  CCD24966.1 134 WVLSCAISPSGKLVASGGLNNNCTIYRVSKENRVQQNVVSIFKGHTC-YISDIEFWDNSH 192
                 36777899999999999999999999999999999999999999976.688888888865 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.0097
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqv 216
                 ++s +++  f  dG ++ t s dG++ +f +
  CCD24966.1 273 SDSDVTSIKFFKDGNSIITGSDDGIINMFDL 303
                 578899999******************9975 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0018
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkff 214
                 k++ hs  i+    spdG a+ tas d ++k +
  CCD24966.1 391 KLDGHSdRISGVETSPDGLAVCTASWDSTMKIW 423
                 5778887899999****************9988 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.7   1.2e-05      0.03      98     132 ..      27      61 ..      15      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.2e-05
         LXG  98 dfLeqelenglkkakevteelkdeinkilasvsdi 132
                 + Le+e+++++++a+++t++l  ++nki+++++d 
  CCD24966.1  27 QTLEDEIQQKIDQARNETKHLYTQVNKIKSKIQDA 61 
                 679*****************************997 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.3   4.5e-05      0.11      75     166 ..      24     111 ..      11     114 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.5e-05
   Golgin_A5  75 telqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvrskatlqsrikdrekeieklrnqlttkslsssses 166
                 +++q le++ q+ ++++r++ ++l +q+++ +++ +  +a+l +++++++ l + +++ k tl  r   ++++i++ +  l +ks  sss++
  CCD24966.1  24 QDIQTLEDEIQQKIDQARNETKHLYTQVNKIKSKIQ--DADLFQISQQIEPLIKPHINLKPTLTLRG--HNNKISQFKWSLNSKSILSSSQD 111
                 689*************************96666655..899****************9999987665..8899***********99999886 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.1    0.0002      0.52      82     120 ..      22      60 ..      13      62 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
     DUF5082  82 yvdkldelidaieeEIerLenqiseaqgvldtlqsqlns 120
                 +++++ +l+d+i+++I + +n+ +++++ +++++s++++
  CCD24966.1  22 SYQDIQTLEDEIQQKIDQARNETKHLYTQVNKIKSKIQD 60 
                 5789*********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1653  (0.092197); expected 358.6 (0.02)
Passed bias filter:                     1133  (0.0631937); expected 358.6 (0.02)
Passed Vit filter:                       164  (0.00914719); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.41
# Mc/sec: 3154.22
//
Query:       CCD24967.1  [L=385]
Description: hypothetical protein NDAI_0E01510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-44  149.2   2.0    2.1e-22   79.2   0.0    3.0  3  Linker_histone  linker histone H1 and H5 family


Domain annotation for each model (and alignments):
>> Linker_histone  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   1.2e-26   2.1e-22       2      73 ..     166     236 ..     165     237 .. 0.95
   2 ?   -2.8   0.6      0.49   8.9e+03      43      56 ..     271     284 ..     256     299 .. 0.49
   3 !   68.6   0.0   2.5e-23   4.5e-19       2      73 ..     306     375 ..     305     376 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 1.2e-26
  Linker_histone   2 psykdMikeAIkalkerkGsSrqaIkkyikakykvv.dvskfksllkkalkkgvekgelvqpkgkGasGsfKL 73 
                     +syk++ik+AI +l+erkGsSr+a+kk++k++++   ++++f++++++alkkgv+ ge++qpk  G+sG++ L
      CCD24967.1 166 KSYKNLIKDAIRDLNERKGSSRMALKKHLKSQNPNFeTTTNFDHFFNSALKKGVDGGEFIQPK--GPSGTVML 236
                     69********************************88888999*********************..****9976 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.49
  Linker_histone  43 ksllkkalkkgvek 56 
                     ++  k  ++k vek
      CCD24967.1 271 TTNKKTSMNKKVEK 284
                     33333333333333 PP

  == domain 3  score: 68.6 bits;  conditional E-value: 2.5e-23
  Linker_histone   2 psykdMikeAIkalkerkGsSrqaIkkyikakykvvdvskfksllkkalkkgvekgelvqpkgkGasGsfKL 73 
                     psyk+Mi++ +++l++ kG+Sr ++kk++k ++   ++++f++l+++++kk+v++gel  pk  G+ G++K 
      CCD24967.1 306 PSYKEMIMKSLSDLNDGKGASRNTLKKFVKGNFDSINPTRFDYLFNSTIKKCVDSGELLMPK--GPLGTVKF 375
                     9*********************************99**************************..******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2503  (0.139606); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                       179  (0.00998383); expected 17.9 (0.001)
Passed Fwd filter:                        83  (0.00462937); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.44u 0.36s 00:00:01.79 Elapsed: 00:00:00.56
# Mc/sec: 2077.29
//
Query:       CCD24968.1  [L=903]
Description: hypothetical protein NDAI_0E01520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-42  145.0   0.1    2.1e-42  145.0   0.1    3.0  4  Dynamin_N  Dynamin family
      3e-05   24.1   0.1    0.00028   20.9   0.1    2.5  1  MMR_HSR1   50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.017   14.3  10.5      0.033   13.4   0.1    3.0  3  Dynamin_M  Dynamin central region
      0.086   13.2   0.4       0.57   10.6   0.0    2.3  2  AAA_16     AAA ATPase domain
        0.1   12.8   0.0       0.35   11.1   0.0    2.0  1  Roc        Ras of Complex, Roc, domain of DAPkinase
       0.16   12.3   1.9       0.38   11.1   0.7    2.2  2  HTH_18     Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3      0.34     1e+03      49     105 ..     179     235 ..     160     235 .. 0.74
   2 !  145.0   0.1     7e-46   2.1e-42       1     167 [.     238     411 ..     238     412 .. 0.95
   3 ?   -2.6   0.2       1.7   5.1e+03      48      79 ..     487     518 ..     468     566 .. 0.66
   4 ?   -2.2   0.1       1.3   3.8e+03     120     156 ..     739     775 ..     720     781 .. 0.65

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.34
                 S...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEEEETTS-SEEE CS
   Dynamin_N  49 ravkeelkekekkledfsevreeieketekiagankgiskkvillkilsllvkgltl 105
                 +++++e k++ +++ed +++ + ++  +++  +  k++ ++  ++++ + +  +ltl
  CCD24968.1 179 DEEDKEKKSDDDEDEDEDDYLDSVDTTQDEMLNLTKQMIEIRSIVSKVDSTSANLTL 235
                 345566677788888888888888888888888888888888888888888877776 PP

  == domain 2  score: 145.0 bits;  conditional E-value: 7e-46
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---CCS...SSEEEE....T-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EEEEE CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeaseravkeelkek....ekkledfsevreeieketekiagankgiskkvillki 95 
                 i+v+GsqSsGKSSvl++++g+++lp+g+n++Trrp+el+l +++      ++e   ++    + +l+df+ev++ +++ ++ +  + +++s+++i l+i
  CCD24968.1 238 IVVIGSQSSGKSSVLESIVGKEFLPKGSNMVTRRPIELTLVNTPG-----NSEITADFptlrTYNLTDFKEVKRILMELNMAVP-STEAVSEEPIQLTI 330
                 89*******************************************.....333444445567999**********999999999.99************ PP

                 EETTS-SEEEEE---B-SSSGTTS.........HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N  96 lsllvkgltlvDlPGldsvnkrdq.........elvkeyikkadiilavtsanhdlsnsealflarevdpkgkrtivvltk 167
                 ++ +v++l+lvDlPG+++v++ dq          l+++y+++ +iila+++a++dl+ns al+ a+++dp+g rti+v+tk
  CCD24968.1 331 KASTVPDLSLVDLPGYIQVEAADQpmelkskirLLCDKYLNEPNIILAISAADVDLANSSALRAAKLADPQGLRTIGVITK 411
                 ********************************99**********************************************9 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.7
                 CS...SSEEEET-EB--CHHHHHHHHHHHHHH CS
   Dynamin_N  48 eravkeelkekekkledfsevreeieketeki 79 
                  +++k  +ke++k +++ +  +++++++  ki
  CCD24968.1 487 RQFEKSYFKENRKTFQNCQVTTKKLREKLIKI 518
                 34555555666666666666666666555544 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 1.3
                 HHHHHHHSTTEEEEEEEETTS-CCC-CHHHHHHHHST CS
   Dynamin_N 120 elvkeyikkadiilavtsanhdlsnsealflarevdp 156
                 e +k+ i ++++  ++ + ++d +++e l +++++ +
  CCD24968.1 739 ETIKNVIGNKKLQHVMHYLEQDTTQKETLGMSKMLLE 775
                 5566666666666666667777777777776666655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   9.5e-08   0.00028       2      69 ..     238     361 ..     237     398 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 9.5e-08
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEE..................................................... CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgke..................................................... 47 
                 ++++G   +GKS+++ +++g++   +  + +Tr ++e ++   +++                                                     
  CCD24968.1 238 IVVIGSQSSGKSSVLESIVGKEFLPKGSNMVTRRPIELTLV--NTPgnseitadfptlrtynltdfkevkrilmelnmavpsteavseepiqltikast 334
                 89*********************************999987..22234578888999999999999999999999999999999999999999999999 PP

                 ...EEEEECGGCSS..HHHHHHHHHHH CS
    MMR_HSR1  48 ...ielvDtpGlie..gaseekglgka 69 
                    + lvD+pG i+   a++  +l+ +
  CCD24968.1 335 vpdLSLVDLPGYIQveAADQPMELKSK 361
                 999********7653233333344433 PP

>> Dynamin_M  Dynamin central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.1e-05     0.033       1      22 [.     420     441 ..     420     444 .. 0.91
   2 ?    5.0   2.8    0.0039        12      35      97 ..     485     546 ..     478     599 .. 0.76
   3 ?   -4.1   0.1       2.4   7.3e+03     214     262 ..     656     702 ..     650     703 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.1e-05
   Dynamin_M   1 vvdilenkvipLklGYvgVvnR 22 
                 +++il+nk++pLk GYvgV+ +
  CCD24968.1 420 ARNILNNKKYPLKMGYVGVITK 441
                 689****************876 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0039
   Dynamin_M  35 ealkkEkaFFeshpayrkl.adkaGtpyLakkLnqiLvehIrkslPelkkkineklqklekele 97 
                 ea++ Ek++F+++    ++ + +++t+ L +kL +iL    ++ l    + i+++l +++   +
  CCD24968.1 485 EARQFEKSYFKENRK--TFqNCQVTTKKLREKLIKILEISMSNALEPTSTVIQQELDDTSYLFK 546
                 7999*******9955..666889***************99999999999999999988865444 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 2.4
   Dynamin_M 214 VyeelekiveklekelkrFpnLreeikevvedllreqeeptkemienli 262
                 + +el +++e   ++lk+   ++e + +   ++l+++   t +++en +
  CCD24968.1 656 ILKELGNVLEC--TQLKNHDLIKELVLNTAVNVLNTKYYSTADQVENCV 702
                 44555555555..467777777777777777777777777777777766 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00019      0.57       8      44 ..     218     255 ..     212     272 .. 0.80
   2 ?   -0.4   0.1      0.43   1.3e+03      45     126 ..     490     598 ..     478     610 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00019
      AAA_16   8 eleqLlsalervrsgrp.elvllsGesGvGKsslvrel 44 
                 e++ + s +++++++ + ++++++G + +GKss+++++
  CCD24968.1 218 EIRSIVSKVDSTSANLTlPSIVVIGSQSSGKSSVLESI 255
                 455555555666666569*****************876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.43
      AAA_16  45 lralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala..................................... 106
                  +++ k+     r +++ +      ++ ++ l re+l++ l+    s++le+ ++ ++++l                                      
  CCD24968.1 490 EKSYFKE----NRKTFQNC------QVTTKKL-REKLIKILEIS-MSNALEPTSTVIQQELDdtsylfkvefndrqltpksyllnnidilklsikefqe 576
                 3333333....77777777......5578888.88999988877.666999999999998887777777777666666666666666666665555555 PP

      AAA_16 107 ..avpelagaeasrllellkrl 126
                     +el++ ++ +l +++ ++
  CCD24968.1 577 kfNRNELKSILKADLDQKVLDF 598
                 5555555555555555555555 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.35       2      34 ..     238     270 ..     237     290 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTE CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigv 34 
                 +v++G +++GK+s l+++v ++f +k ++++  
  CCD24968.1 238 IVVIGSQSSGKSSVLESIVGKEFLPKGSNMVTR 270
                 89*********************9998877765 PP

>> HTH_18  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7   0.00013      0.38       3      75 ..       3      74 ..       1      79 [. 0.95
   2 ?   -1.6   0.0       1.1   3.3e+03      22      47 ..     739     762 ..     731     767 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                HHHT--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHHSSS---HHHHHHHTT-S-HHHHHHHHHHHHSS-H CS
      HTH_18  3 aalgvsrrtLqrlfkrvlgltpkeylrrlRlerArrlLlentglsvaeiAlalGFsdlsrFsrafrklfgetP 75
                 al +sr tLq l  ++l+ + +  +rrl l +  r++++ + +s + +     F  + +++r fr++  ++P
  CCD24968.1  3 SALSLSRNTLQILTSNRLQHPSHVCMRRLMLSHFTRRFIH-STRSSSSLIINIPFPRQPYLHRTFRNHSTTYP 74
                6899***********************************7.**************************988877 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
                 S-HHHHHHHHHHHHHHHHHHSSS--- CS
      HTH_18  22 ltpkeylrrlRlerArrlLlentgls 47 
                  t k ++ +++l+++++ L e ++++
  CCD24968.1 739 ETIKNVIGNKKLQHVMHYL-E-QDTT 762
                 688999999********99.5.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (903 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1088  (0.0606838); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 6465.29
//
Query:       CCD24969.1  [L=70]
Description: hypothetical protein NDAI_0E01530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-30  102.7   0.5    1.1e-29  102.5   0.5    1.0  1  RNA_pol_N       RNA polymerases N / 8 kDa subunit
  ------ inclusion threshold ------
      0.059   13.6   0.2      0.079   13.2   0.2    1.3  1  Chordopox_RPO7  Chordopoxvirus DNA-directed RNA polymerase 7 


Domain annotation for each model (and alignments):
>> RNA_pol_N  RNA polymerases N / 8 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.5   1.2e-33   1.1e-29       1      58 [.       1      59 [.       1      60 [. 0.95

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 1.2e-33
                ----SS-TTT--B-STHHHHHHHHHHTT.--HHHHHHHHT--SHHHHHHHHTB--THHH CS
   RNA_pol_N  1 MiiPVrCFtCGkvigekweeylellekg.eepkdaLdaLglkryCCrrmllthvdliek 58
                Mi+PVrCF+CGkv+g+kwe+yl++l+++  +++ aL  LglkryCCrrm+lthvdliek
  CCD24969.1  1 MIVPVRCFSCGKVVGDKWESYLNMLQEDeLDEGTALSRLGLKRYCCRRMILTHVDLIEK 59
                9************************77636899************************98 PP

>> Chordopox_RPO7  Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   8.8e-06     0.079       1      48 [.       1      54 [.       1      65 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 8.8e-06
  Chordopox_RPO7  1 mvfplvCstCGrDlse..eryrLlvkkkkLkd..vla..tvkrkCCrlkLstqi 48
                    m+ p+ C +CG+ + +  e y+ ++++ +L +   l+   +kr CCr  + t +
      CCD24969.1  1 MIVPVRCFSCGKVVGDkwESYLNMLQEDELDEgtALSrlGLKRYCCRRMILTHV 54
                    89999*******99874468**********973234422589****97776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 581.72
//
Query:       CCD24970.1  [L=433]
Description: hypothetical protein NDAI_0E01540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-70  235.9   0.0    6.7e-70  235.4   0.0    1.2  1  NAPRTase    Nicotinate phosphoribosyltransferase (NAPRTase) f
    8.9e-32  110.1   0.5    2.3e-31  108.8   0.5    1.7  1  NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N


Domain annotation for each model (and alignments):
>> NAPRTase  Nicotinate phosphoribosyltransferase (NAPRTase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.4   0.0   7.5e-74   6.7e-70       1     238 [.     177     417 ..     177     420 .. 0.98

  Alignments for each domain:
  == domain 1  score: 235.4 bits;  conditional E-value: 7.5e-74
                 GSEEE-TSTTSSSHHHHHHHHHHHHH......HHTTTEEEESBHHHHHHHT--B--HHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHC.CHIIEE CS
    NAPRTase   1 fklhDFGtRrrsslesqeivvkalkk......ahlvnflGtdnvlaaakysikaaetsahealgkeqelsafrnnlkqfqkdaldlwvaiek.gnlgia 92 
                 +++++FG+Rrr+sl+ q++v++++ +      ++++ +lGt+nv++a+ky+i +++t+ahe++++ ++l+    ++ +++kda+d w+++++ +++g a
  CCD24970.1 177 CSFTEFGSRRRRSLHGQDLVMQGIVRasklspNNEKLLLGTSNVYFAKKYDILPVGTVAHEWFMGIAALTG---DYINANKDAMDYWIETFGkEHAGLA 272
                 689**********************999999999************************************9...*****************9789**** PP

                 ECHCCTHHHHHCCS-CC.HHHSEEEEE-SS-HHHHHHHHHHHHHCTCTTTCCCSEEEEESS-SHHHHHHHHHHHHHTTCEEEEEESHHHHSSECTTCTT CS
    NAPRTase  93 Ltdlvltdaflkdfrle.akaylgvRpDSGdpvevieklaahygstlnskgytkrlifsDgldvekiieilealkkkgfniaFGiGtnltqdlnrdtle 190
                 Ltd+++td+ lk+f+   ++ y gvR+DSGdp+e +ek+a+ y++ l+ ++++k++++sD+l+vek+i++ e ++k gf+++FGiGt++t+d ++ ++ 
  CCD24970.1 273 LTDTFGTDDYLKNFKPPyTDYYFGVRQDSGDPIEFTEKIAHFYNDELKLPKFSKTICYSDSLNVEKVIKYDEVARKYGFKATFGIGTSFTNDYRK-KSD 370
                 ***************999*****************************************************************************.*** PP

                 TCCEEEEEEEEEEEEEETTEETTBGGSSCCGSBGSGHHHHHHHHHHCT CS
    NAPRTase 191 favkasalniviklvevnkdpvakisdrskkgrlgdkefvkllrtvfk 238
                 +avk+++lnivikl+ v +++++k+sd+ +k++ gd+e+v++++++++
  CCD24970.1 371 PAVKSEPLNIVIKLLTVDGKHAIKLSDNLGKNM-GDPETVQRVKKELG 417
                 *********************************.*********99876 PP

>> NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.5   2.6e-35   2.3e-31       1     125 []      15     145 ..      15     145 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.8 bits;  conditional E-value: 2.6e-35
  NAPRTase_N   1 LdtDlYkltmaqavfkkgpdvevvfelffRkkpfkgeyaivagleevieylenlrfteeeieyLkrklpyfkedfleyLr..tfrfkpse.vaveeeev 96 
                 LdtDlYk+tm++av+k++p+v+v +++++R+++f++++a +++l+ +++ le++++t++ei+yLk+k+py++++f++y+   +fr++pse + ++ e v
  CCD24970.1  15 LDTDLYKITMQAAVLKHFPNVKVIYKYTNRSPQFTFNKASIDWLNIQFKLLETIQVTPDEIKYLKDKVPYLPDSFMKYIGqkDFRLRPSEqLDFQYELV 113
                 8*****************************************************************************97447******9999999877 PP

  NAPRTase_N  97 ...vfpgepeirveGpwieaillEtplLaivn 125
                     ++ ++++ veG w ++i++E+plLa+++
  CCD24970.1 114 pgtKDEYTLKLFVEGYWKDTIMYEIPLLALIS 145
                 87678889**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3415.75
//
Query:       CCD24971.1  [L=1154]
Description: hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.8e-125  418.5   0.1   4.8e-125  417.7   0.1    1.4  1  RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
    3.3e-63  212.9   1.1    2.5e-62  210.0   1.1    2.0  2  RNA_pol_Rpb2_1  RNA polymerase beta subunit
    4.2e-42  143.9   2.3    9.8e-42  142.7   2.3    1.7  1  RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
    1.4e-33  115.2   2.4    2.4e-33  114.4   0.2    2.6  3  RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
    2.3e-26   91.8   0.2    8.1e-26   90.1   0.2    2.0  1  RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4
    1.6e-18   66.7   0.0    4.4e-18   65.2   0.0    1.8  1  RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
    4.9e-10   39.8   0.2    4.9e-10   39.8   0.2    2.6  2  RNA_pol_Rpb2_5  RNA polymerase Rpb2, domain 5


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.7   0.1  1.9e-128  4.8e-125       1     390 []     690    1060 ..     690    1060 .. 0.94

  Alignments for each domain:
  == domain 1  score: 417.7 bits;  conditional E-value: 1.9e-128
                      HHHT-SS-TTB-HHHHHHHHHHGGGB-S---TTTTT---SSEEEESS----SSB-S.TTTTTS........GGGS-SEEEEEBBBS--TTTTT CS
  RNA_pol_Rpb2_6    1 vaklapvvehvqspriiiqaamekqalgiyslnkfkrsnqktyllcinqkPlvktgdkveagqvldgpatekgelalGqnavVAvmsyeGYni 93  
                      va l+p+++h+qspr+++q+am+kqa+g +++n+fkr+++ +yl++++q+P+vkt+ ++e+++        +++l++Gqna+VAvmsy+GY+i
      CCD24971.1  690 VAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTK-TIELID--------YDKLPAGQNATVAVMSYSGYDI 773 
                      6899****************************************************.******........********************** PP

                      TT-EEEBCHHHHTTTT-EEEEEE..EEE--SSSS---.-S--..-....-SS-GGGS-TTSB--SS-EEETT-EEE---..B-----...--- CS
  RNA_pol_Rpb2_6   94 EDaiilnerlvdrdvftsihikeyeveardtklgeeeitrdipnv....seealkkLdedGivrvgaevkegdilvgkvtkgeteltpeekll 182 
                      EDa+++n++++dr++ ++ + +++++  +++++++++i+  +  +       ++k L  dG+ +vg ++ +g+i+++k    +t+ t     l
      CCD24971.1  774 EDALVINKASIDRGFGRCETRRKTTTILKRYPNHTQDIISGMRVDengdPIWQHKALGPDGLGEVGMKLDSGQIYINKA--VPTNPT---SDL 861 
                      ***********************8888899999998888877555556678899************************7..444444...233 PP

                      --------..-B---EE--TT-EEEEEEEEE.......EE-TT--EEEEEEEEEEE---TT-BEEETTS---BBEEEB-TTTSEEETTS---S CS
  RNA_pol_Rpb2_6  183 raifgekarevkdtslrvksgeegvVdkvkvfsrekgdelkagvnklvkvyvaqkRklqvGDKfasrhGqKGvvslilpqeDmPfledGivvD 275 
                      +a    ++++++dt ++++  e+  +d+v++       + +++ + l+kv ++q+R++++GDKf+srhGqKGv+++i++qeDmPf ++Giv+D
      CCD24971.1  862 NAA--PEQSQYRDTPVMYRAPEPSHIDQVMM-------SVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFNDQGIVPD 945 
                      333..3444589*******************.......8899999************************************************ PP

                      EEE-GGGCHHH-BTTHHHHHHHHHCCCSSSS--B--TT-...-HHHHHHHHHTTS-TT-EE-EEETTTS-B-SS-EEB-EEEEEEBS--CCCS CS
  RNA_pol_Rpb2_6  276 ivlNPlgvPSRmtigqllEtllgkaaalegkkvdatvFdgakeeeikelLeeagleasGkevlydGrtGekleaeifvGviYylkLkhlvedK 368 
                      i++NP+g+PSRmt+g+++E++ gka+ l+g+  ++t+F g+k e++++ L  +g+++sGk++ly+G+tGe l+a+if+G+iYy+kLkh+v dK
      CCD24971.1  946 IIMNPHGFPSRMTVGKMIELVSGKAGVLNGSLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDK 1038
                      ***************************************9999************************************************** PP

                      ----SS--B-TTT--B-SCGGG CS
  RNA_pol_Rpb2_6  369 ihaRstGpyslltqQPlgGkaq 390 
                      +haR++Gp  +lt+QP++G+++
      CCD24971.1 1039 MHARARGPRAVLTRQPTEGRSR 1060
                      ********************86 PP

>> RNA_pol_Rpb2_1  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.0   1.1   9.6e-66   2.5e-62       1     203 []      62     437 ..      62     437 .. 0.98
   2 ?    0.3   0.0      0.17   4.2e+02      41      89 ..     840     889 ..     811     903 .. 0.78

  Alignments for each domain:
  == domain 1  score: 210.0 bits;  conditional E-value: 9.6e-66
                     CTTHHHHHHHHHHHHTHHHHHCTTSSECCHCSSSHCSSSCEEEEEEEEEEESCSSECTTSCEEES.HHHHHHCTSBXEEEEEEEEEEEECCCCTC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1   1 gLvsqqldSFnkfveqdlekiikeeaaieseeeiqssgeelelkfvsirlgkPvvdesdasereiyPkearlrnltYsaplyvklklvvyekdnk 95 
                     gLv+q+ldSFn+fv+ dl+kiik+++ i s+++++     ++lk+v+ir+gk++ ++  a+++ + P+e+rlr++tYsap+yv++++++     +
      CCD24971.1  62 GLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPE-----FYLKYVDIRVGKKSTSS--ARDYLTPPHECRLRDMTYSAPIYVDIEYTR----GR 145
                     69*******************************97.....*************9999..9*****************************....8* PP

                     CEEEEEEEEEEEEEXBTTSTTSSSTTS.HHHHHHTTS.TTS..SSEEETTCEEEEXEEEE................................... CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................... RF
  RNA_pol_Rpb2_1  96 eeikeeevyiGelPlMlrskacvlseaseeelvelkEcpldqGGyFiinGtekvivaqek................................... 155
                     + i++++v+iG++P+Mlrs++c+l++a+e+++++l+Ecpld+GGyFi+nGtekvi++qe+                                   
      CCD24971.1 146 NIIMHKDVEIGRMPIMLRSNKCTLYGADEKQMAKLNECPLDPGGYFIVNGTEKVILVQEQlsknriiveadekkgivqasvtsstherksktyvi 240
                     *********************************************************************************************** PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      CCD24971.1 241 tkngkiylkhnsiaeeipivivlkacgivsdleimqlvcgndssyqdifavnleeaaklnlytqqqalefigakvktmrrqklsilqegieaiat 335
                     *********************************************************************************************** PP

                     .................................................XHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS.....SSSHHHHS CS
                     .................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxx RF
  RNA_pol_Rpb2_1 156 .................................................laGeLlaslfrvllkklerdvkerlqkslekld.....dlmlqllv 196
                                                                      laG++++ lf++l+kk+++d+k++++k+lek++     d+ l++ v
      CCD24971.1 336 tvvahltvealdfrekalymammtrrvvmaihnpkmvddrdyvgnkrleLAGQMVSLLFEDLFKKFNSDFKATIDKVLEKPNrameyDALLSINV 430
                     **********************************************************************************7777777788889 PP

                     CSHHHHH CS
                     xxxxxxx RF
  RNA_pol_Rpb2_1 197 nakpita 203
                     ++++it+
      CCD24971.1 431 HSNNITS 437
                     9999985 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.17
                     EEEEEEEEEEESCSSECTTSCEEES.HHHHHHCT..SBXEEEEEEEEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1  41 lelkfvsirlgkPvvdesdasereiyPkearlrn..ltYsaplyvklklvv 89 
                     ++l+ ++i+++k v ++  +s+ +  P++++ r+  + Y+ap   ++ +v+
      CCD24971.1 840 MKLDSGQIYINKAVPTN-PTSDLNAAPEQSQYRDtpVMYRAPEPSHIDQVM 889
                     78999*******99988.8999999*******9844568887666666555 PP

>> RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   2.3   3.8e-45   9.8e-42       2     190 .]     208     384 ..     207     384 .. 0.97

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 3.8e-45
                     TSCEEEEE-SSSSSESSSCCEECCCEEEEECCCCSTSCEEEEECTTSSSEEEHHHHHHHTT--STTHHHHHHTSSSTTHHHHHHHHHHHHHHCTS CS
  RNA_pol_Rpb2_2   2 sngiyvekekdknkisatvtsslisqrgsvlklekdgktliwtriskkrkipivivlkAlglvsdreIlericydsedsqlleelleeleekeei 96 
                     +n+i+ve++++k  ++a+vtss++++++++++++k+gk++++++ s+ ++ipivivlkA+g+vsd eI++ +c++++++q++++++ e+  k ++
      CCD24971.1 208 KNRIIVEADEKKGIVQASVTSSTHERKSKTYVITKNGKIYLKHN-SIAEEIPIVIVLKACGIVSDLEIMQLVCGNDSSYQDIFAVNLEEAAKLNL 301
                     8***************************************9998.9999********************************************** PP

                     SSCHHHHHHHHH.CSSTTSSSCCCCCHHHHHHHCHHHHHHHTTTTSSTTTTTSSSTCHH..HHHHHHHHHHHHHHHHTTSSSS--TTSGGGEEEE CS
  RNA_pol_Rpb2_2  97 qtqeealdyigk.vvalrrgeearlqsareilqkrydlgeigreklnkhlglseslenkrlkaqdilymidrLlslklgrrevDDiDhlgnkRvr 190
                     +tq++al++ig+ v+++rr++ + lq++ e++            ++++hl+++   +++  ka + ++m++r++++ +++++vDD+D++gnkR++
      CCD24971.1 302 YTQQQALEFIGAkVKTMRRQKLSILQEGIEAI----------ATTVVAHLTVEALDFRE--KALYMAMMTRRVVMAIHNPKMVDDRDYVGNKRLE 384
                     ************9******************9..........578999*******9999..********************************95 PP

>> RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       4.1   1.1e+04      44      70 ..     272     299 ..     260     308 .. 0.68
   2 ?   -1.7   0.0       1.5   3.9e+03      15      46 ..     513     544 ..     512     554 .. 0.83
   3 !  114.4   0.2   9.4e-37   2.4e-33       1      85 [.    1062    1146 ..    1062    1148 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.1
                     CCCEE.EBTTTTCSSSEEEEEEEHHHHH CS
  RNA_pol_Rpb2_7  44 laaan.eCkivkseekiekveipeafkl 70 
                     l++++  C + +s ++i  v++ ea+kl
      CCD24971.1 272 LEIMQlVCGNDSSYQDIFAVNLEEAAKL 299
                     3333357888888888889999999887 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
                     HHTBHHHHHHHHTTTTTEEEEEEESSSSSCCC CS
  RNA_pol_Rpb2_7  15 ayGaaalLkerltikSDavevdvcgrckllaa 46 
                     a G  ++L  + +i+SD  e  +++ c +l +
      CCD24971.1 513 ACGLVKNLALMTHITSDDEEEPIKRVCYVLGV 544
                     6788889999999****999999999988776 PP

  == domain 3  score: 114.4 bits;  conditional E-value: 9.4e-37
                      BBEEEEHHHHHHHHHHTBHHHHHHHHTTTTTEEEEEEESSSSSCCCEEEBTTTTCSSSEEEEEEEHHHHHHHHHHHHTTBEEEEE CS
  RNA_pol_Rpb2_7    1 GGlrfGEMErdaliayGaaalLkerltikSDavevdvcgrckllaaaneCkivkseekiekveipeafklLlqeLqslgialkll 85  
                      GGlr+GEMErd++iayGa++lL erl+i+SDa+evdvc++c+l+ +  +C+++ks e+i k++ip+a+klL+qeL s++ia++l 
      CCD24971.1 1062 GGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDECGLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLR 1146
                      9*********************************************************************************986 PP

>> RNA_pol_Rpb2_4  RNA polymerase Rpb2, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.2   3.2e-29   8.1e-26       1      61 [.     561     621 ..     561     622 .. 0.99

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 3.2e-29
                     EECTT-BEEE-S-HCCHHHHHHHHCCTTSS-TT-EEEE-TTT--EEEE-SSEEB-EEEEE- CS
  RNA_pol_Rpb2_4   1 VfvNGrllGvtrdpkklvetlRelRRkgkiseevsivlnekqkevkiatDgGRvcRPliiV 61 
                     V++NG+l+G+tr p k+v+++R+lRR+gk+se++si++n++qk v+iatDgGR+cRPliiV
      CCD24971.1 561 VYLNGTLIGTTRFPIKFVSQFRHLRRTGKVSEFISIYTNSHQKAVHIATDGGRICRPLIIV 621
                     9***********************************************************9 PP

>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   1.7e-21   4.4e-18       2      68 .]     463     526 ..     462     526 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 1.7e-21
  RNA_pol_Rpb2_3   2 vldrlnplselshlrrvsslrgglskerkttevRdlhpshwGriCpveTPEGencGlvksLallarv 68 
                     vl rl+++s l  ++r+ss    ++k+rk + +R l+ps++G++C ++TPEGe cGlvk+Lal++++
      CCD24971.1 463 VLSRLSYISALGMMTRISSQ---FEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHI 526
                     789***************88...*****************************************987 PP

>> RNA_pol_Rpb2_5  RNA polymerase Rpb2, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   1.6         7   1.8e+04      42      53 ..       8      19 ..       3      20 .. 0.73
   2 !   39.8   0.2   1.9e-13   4.9e-10       1      58 []     643     683 ..     643     683 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.9 bits;  conditional E-value: 7
                    --TTSSSST-SE CS
  RNA_pol_Rpb2_5 42 ekenskshtyTH 53
                    +k++sk+h++TH
      CCD24971.1  8 RKTTSKAHKHTH 19
                    467888999999 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 1.9e-13
                     HHHHHHTTSEEEEEHHHHTT--EESSTTTCSST-SSTTTSS--TTSSSST-SEEES-G CS
  RNA_pol_Rpb2_5   1 wddLlregvvEylDaeEEetamIamtpedleksreekealeekenskshtyTHcEIhP 58 
                     +dd+l+ g+vEylD++EE++++Ia++++d++ +                  TH+EI+P
      CCD24971.1 643 FDDFLKLGLVEYLDVNEENDSFIALYEKDINVA-----------------STHMEIEP 683
                     9*****************************776.................49999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.76u 0.26s 00:00:01.02 Elapsed: 00:00:00.42
# Mc/sec: 8207.00
//
Query:       CCD24972.1  [L=253]
Description: hypothetical protein NDAI_0E01560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-20   73.2   0.1    2.6e-20   72.0   0.1    1.7  1  DUF5315   Disordered region of unknown function (DUF5315)
  ------ inclusion threshold ------
       0.19   11.7   3.6        1.4    8.8   0.2    2.2  2  DUF4942   Domain of unknown function (DUF4942)


Domain annotation for each model (and alignments):
>> DUF5315  Disordered region of unknown function (DUF5315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.1   2.9e-24   2.6e-20       6      76 ..     105     172 ..     100     173 .. 0.92

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 2.9e-24
     DUF5315   6 skpsvdrqDalWaeidtLddVklsAeegkkthvFgeehekaLeelReaqikLaqawrrseadekleeekrr 76 
                 s  + ++++ +W++idtLddVk++A++  k+++F++++e++L+++R++++kL+ a+r++  +e+l++e+++
  CCD24972.1 105 SISTLEKSEGVWSDIDTLDDVKKMAQDY-KGDGFPSNFESNLDQMRRSNAKLLTAMRDR--NERLQKEYEA 172
                 55667899********************.******************************..****998875 PP

>> DUF4942  Domain of unknown function (DUF4942)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2   0.00016       1.4     110     166 ..     114     170 ..      80     182 .. 0.80
   2 ?    4.0   0.3    0.0047        42      29      65 ..     184     220 ..     178     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00016
     DUF4942 110 lsydaenklddlervlalldGktinderndeseqvakaaektlvsraeegqevendy 166
                   ++  ++ldd++++++ ++G + ++++++  +q+ + + k l++  +++++++++y
  CCD24972.1 114 GVWSDIDTLDDVKKMAQDYKGDGFPSNFESNLDQMRRSNAKLLTAMRDRNERLQKEY 170
                 45778899****************************999988877444444444444 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0047
     DUF4942  29 evekqleeqakpefsveNIyatfeelvknrkeiferg 65 
                 + e+++e +++ e++++N +++ +++++n++ +++++
  CCD24972.1 184 DGENFFEAKKENEIEENNTRSHYTAMCGNKDAVINEQ 220
                 568999*************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1687  (0.0940934); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 1997.02
//
Query:       CCD24973.1  [L=701]
Description: hypothetical protein NDAI_0E01570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.7e-128  427.0   6.5   4.9e-128  426.6   5.1    1.9  2  Noc2      Noc2p family


Domain annotation for each model (and alignments):
>> Noc2  Noc2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0     0.087   1.6e+03     212     250 ..     217     255 ..     210     286 .. 0.80
   2 !  426.6   5.1  2.8e-132  4.9e-128       2     297 ..     347     655 ..     346     657 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.087
        Noc2 212 allsksiaFPElvlpvvvqLkrflkstkneklrkqlkqL 250
                  ++  + aF El+++++  L ++++++   k++k  ++L
  CCD24973.1 217 YTVTDERAFHELMFVALKDLPQVIQKMAPYKTTKGSRTL 255
                 56667789************9999999887777766655 PP

  == domain 2  score: 426.6 bits;  conditional E-value: 2.8e-132
        Noc2   2 llelvlkkvYlalvknskftsvktlplinfmknsaveLygldeavsyqhafvyIrqLAihLRnalktkk........keayksvynWqfvhsldlWsrv 92 
                 +le vlk++Y++++k++++t+++t+plinf+knsa+eL+g+de vsyq++f+yIrqLAihLRn++++++         e yk +ynWqf+hsld+Wsrv
  CCD24973.1 347 ILEVVLKTTYSTFIKSCRKTNLRTMPLINFQKNSAAELFGIDEVVSYQVGFEYIRQLAIHLRNTMNATTkkttrsdpAEVYKIIYNWQFCHSLDFWSRV 445
                 899*************************************************************9999778899999********************** PP

        Noc2  93 lsaacsk.....keselkpLiypLvqvilgaikLiptaryfPlrlhlirsLlrLsestgtfIPvaplllevLeskelkkkpkkkstlkpldfevtlkvp 186
                 ls +c++     +es+l++LiypLvqv++g+++Lipta++fPlr++li+sL+rLs++tg+fIP++pll e+L+s++++k +k+k++l+++df++++k++
  CCD24973.1 446 LSFSCNPerengRESPLRQLIYPLVQVTIGVTRLIPTAQFFPLRFYLIKSLIRLSQNTGVFIPIFPLLSEILTSTAFTKFSKRKENLEAFDFDHNIKCT 544
                 ******99***************************************************************************99************** PP

        Noc2 187 ksylktrvyqdglieevvellleylallsksiaFPElvlpvvvqLkrflkstkneklrkqlkqLvekleenskfieekRekvefspkdreeveafekel 285
                 ++yl t+vyq+gl+e++v+l+ ey++l++ks++FPEl++pv+++L+r++k++kn k++kql+++vekl++ns+fi++kR++vefsp++ +ev++f+++l
  CCD24973.1 545 QAYLGTKVYQEGLVEQFVDLVGEYFTLYCKSVSFPELATPVIISLRRYIKTSKNIKFNKQLSNIVEKLNQNSTFIQTKRSEVEFSPSNNTEVNRFLNDL 643
                 *************************************************************************************************** PP

        Noc2 286 ksektPlgkyvk 297
                  +ektPlg+yv 
  CCD24973.1 644 PWEKTPLGAYVF 655
                 **********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1811  (0.10101); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 5062.31
//
Query:       CCD24974.1  [L=556]
Description: hypothetical protein NDAI_0E01580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-07   29.7   0.1    4.1e-06   26.8   0.0    2.5  2  MMR_HSR1     50S ribosome-binding GTPase
    1.4e-05   25.1   0.5    2.4e-05   24.3   0.1    1.6  2  RsgA_GTPase  RsgA GTPase
     0.0012   18.4   0.6       0.57    9.7   0.2    2.4  2  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0073   16.4   0.4       0.15   12.1   0.0    2.9  3  Dynamin_N    Dynamin family
  ------ inclusion threshold ------
      0.023   15.2   0.0      0.053   14.0   0.0    1.7  1  ABC_tran     ABC transporter


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   4.8e+03      69     100 ..      52      81 ..      39      91 .. 0.64
   2 !   26.8   0.0   1.2e-09   4.1e-06       4      72 ..     220     321 ..     217     340 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
                 HHHHHHCTSEEEEEEETTTTCSHHHHHHHHHH CS
    MMR_HSR1  69 aflaleeadlillvvdaseeklkpldeeleel 100
                 +++++e+ + +l+  d++ + lk++++e+ e 
  CCD24974.1  52 HIKSIEDLKYLLFSQDIQ-K-LKEDEKEVIES 81 
                 455566678888888866.3.66666666554 PP

  == domain 2  score: 26.8 bits;  conditional E-value: 1.2e-09
                 EEESTTSSHHHHHHHHHT..................................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSS....HHHHHH CS
    MMR_HSR1   4 ivGrpNvGKStLinaltg..................................ekaivsdkpgtTrdinegrvklkgkeielvDtpGlie....gaseek 64 
                 ++G +N+GKStLin+l++                                  + a vs +p  Tr+ + +++     +  + D+pG +     +     
  CCD24974.1 220 FLGATNAGKSTLINSLLRkylgykvnidkkgniihpefppdlqknikkfqklQSAGVSYIPNMTRKAQPYQIG----DKLIFDLPG-YTanvnEV---L 310
                 89***************55555555566666666666777777777777654589***************997....35899****.64222111...1 PP

                 ...HHHHHHHH CS
    MMR_HSR1  65 ...glgkafla 72 
                     ++k++l+
  CCD24974.1 311 ledIIEKDWLE 321
                 22245555554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   6.8e-09   2.4e-05      44     160 ..     151     301 ..     142     305 .. 0.71
   2 ?   -3.8   0.1       2.9   1.1e+04      49      96 ..     472     519 ..     470     523 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 6.8e-09
                  HTT-EEEEEEE-GGG--HHH.........HHHHHHHHHHHTTS.EEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT......... CS
  RsgA_GTPase  44 ekgiepvivlnKiDlleeee.........eleelkeelealgy.evllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpe......... 122
                  +k+ +  ++l+K D l +++          l+++ +++ ++ + + ++vsa ++ +++ l ++lk+  s ++G + +GKStLin+ll +         
   CCD24974.1 151 NKHYTTSLLLTKSDQLIRHKstlnkdvqhFLKDFTHHYMSVKTnKAIAVSALKNWNMDVLYTNLKK-NSYFLGATNAGKSTLINSLLRKylgykvnid 247
                  566678899999998887777888866655666666777666425778999999999999999987.57899**************998677777777 PP

                  .............-----S----------....----SEEEEEETTTEEEESS-S CS
  RsgA_GTPase 123 .............lelktgevseklgrGk....hTTtavellelaegglliDtPG 160
                               l+ ++++ ++ ++ G     + T++++ +++  + l+ D PG
   CCD24974.1 248 kkgniihpefppdLQKNIKKFQKLQSAGVsyipNMTRKAQPYQIG-DKLIFDLPG 301
                  777777776666655555555555555542222456666666666.666666666 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.9
                  EEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHH CS
  RsgA_GTPase  49 pvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkel 96 
                  p++ l K +  +++++++ l+++   +  ++++++ ++k++l +++e 
   CCD24974.1 472 PLLQLIKNNYSTNDSKVSYLSSRNDPIVSKTYVMDHDEKDTLLKMQEI 519
                  666677777777777777777777777777777777777777776665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.2   0.00016      0.57     125     187 ..     156     213 ..     147     218 .. 0.70
   2 !    6.9   0.0    0.0011       4.1       5      26 ..     217     238 ..     213     252 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
                 EEEEEESCGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHH CS
    GTP_EFTU 125 iivfiNKmDrlkaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllea 187
                 + ++++K D+l+   + + ++v++ l   ++  ++y+  +  + + + +Salk+++++ l   
  CCD24974.1 156 TSLLLTKSDQLIRHKSTLNKDVQHFL---KDFTHHYMSVK--TNKAIAVSALKNWNMDVLYTN 213
                 668899*****777777777777555...22244444443..5789***********977665 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0011
                 EEEEEESTTSSHHHHHHHHHHH CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyk 26 
                 n  ++g +++GK+TL+ +Ll k
  CCD24974.1 217 NSYFLGATNAGKSTLINSLLRK 238
                 6678999************975 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.83     3e+03      35      92 ..      36      92 ..      32     110 .. 0.63
   2 !   12.1   0.0   4.2e-05      0.15       3      21 ..     220     238 ..     219     247 .. 0.87
   3 ?    0.4   0.0      0.17     6e+02     101     116 ..     293     307 ..     256     324 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.83
                -EEEEECCT---CCS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--SS-EE CS
   Dynamin_N 35 plelqlgeeeeaseravkeelkekekkledfsevreeieketekiagankgiskkvil 92
                p+++ + +e++   ++  ++  e+ k l   +++++  e+e+e i++++ + s+ +++
  CCD24974.1 36 PCQVGYYQEPKTA-KRPHIKSIEDLKYLLFSQDIQKLKEDEKEVIESKGANNSHLPHN 92
                6777777777744.34444444445555556666666777777777666666665555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 4.2e-05
                 EEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlge 21 
                 ++G++++GKS+++n+Ll++
  CCD24974.1 220 FLGATNAGKSTLINSLLRK 238
                 579*************986 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.17
                 -SEEEEE---B-SSSG CS
   Dynamin_N 101 kgltlvDlPGldsvnk 116
                 ++l ++DlPG++ + +
  CCD24974.1 293 DKL-IFDLPGYTANVN 307
                 334.89****998543 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.5e-05     0.053      11      64 ..     215     268 ..     202     340 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.5e-05
                 TSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  11 gekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvl 64 
                  +   ++G + aGKStL++ l++++   + +i  +g+ ++ +  + l+k+i+ +
  CCD24974.1 215 KKNSYFLGATNAGKSTLINSLLRKYLGYKVNIDKKGNIIHPEFPPDLQKNIKKF 268
                 5667799******************98777776666666664444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3884.27
//
Query:       CCD24975.1  [L=608]
Description: hypothetical protein NDAI_0E01590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-49  166.7   0.0    8.4e-49  165.7   0.0    1.5  2  DEAD           DEAD/DEAH box helicase
    7.1e-32  110.0   0.0    1.4e-31  109.1   0.0    1.5  1  Helicase_C     Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.015   14.6   0.0      0.022   14.0   0.0    1.2  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
      0.061   12.7   0.0       0.13   11.6   0.0    1.4  1  CMS1           U3-containing 90S pre-ribosomal complex subuni
       0.18   11.8   0.0       0.58   10.1   0.0    1.9  1  ResIII         Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7   0.0   2.3e-52   8.4e-49       1     175 [.     159     342 ..     159     343 .. 0.95
   2 ?   -3.2   0.0       1.7   6.1e+03      57      85 ..     401     425 ..     378     449 .. 0.51

  Alignments for each domain:
  == domain 1  score: 165.7 bits;  conditional E-value: 2.3e-52
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet............kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaa 87 
                 t++Q+ +ip++  g+d++++a+TGsGKT+ fl+pvl++ ++t            ++k  p a++++PtreLa q+++++kkf+    ++ ++ +gg + 
  CCD24975.1 159 TPVQKYSIPIVAAGRDLMACAQTGSGKTGGFLFPVLSESFKTgptathdqgsyyQKKAFPTAVVMAPTRELATQIFDEAKKFCYRSWVQPCVAYGGAPI 257
                 79*************************************99999999999999888999*************************9889*********** PP

                 HHHHHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  88 rdqlskldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                  +q++++d+g+d++v+tpgrl dl+++gk++ls+v++lVlDEadr+ld+gf+++i++i++   ++t  g+  rq++++SAT+p d++ 
  CCD24975.1 258 GNQMREMDRGCDLLVATPGRLSDLIDRGKISLSNVKYLVLDEADRMLDMGFEPQIRAIVEGA-DMTPVGE--RQTLMFSATFPADIQH 342
                 ***********************************************************999.5555555..78*********99876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHTTTSTSEEEEEETTS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  57 reLaeqtlnnlkkfkkyidlrvlliiggv 85 
                 + +a q    l+ f+   + r+ +i g+ 
  CCD24975.1 401 KRMADQ----LTDFLIMQNFRATAIHGDR 425
                 333333....3333333334555555533 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.0   3.9e-35   1.4e-31       1     111 []     377     486 ..     377     486 .. 0.95

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 3.9e-35
                 HHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   1 dkleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 dk +all+ll + +e+g +lifv+t++++++++ +l  ++++++++hg+ +q ere++l++f++g  ++L+at va+rG+dip+v++Vin+dlp ++++
  CCD24975.1 377 DKKSALLDLL-SASEDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQAERERALAAFKSGAATLLVATAVAARGLDIPNVTHVINYDLPGDIDD 474
                 5789999**9.99****************99555556778*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y++riGRtgRag
  CCD24975.1 475 YVHRIGRTGRAG 486
                 **********97 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   6.1e-06     0.022      35     151 ..     368     485 ..     360     498 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 6.1e-06
  ERCC3_RAD25_C  35 kkllyvmnpnkfracefLikyhekrgDkiivfsDnvf.aLke..yakklkkpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanv 127
                    +++lyv n +k +a+  L++  e     i v +  +   L++  + ++++ + i+G+ ++aer + l +fk+  +   ++   v+   +D+P+ + 
     CCD24975.1 368 QRVLYVENQDKKSALLDLLSASEDGLTLIFVETKRMAdQLTDflIMQNFRATAIHGDRTQAERERALAAFKSGAA-TLLVATAVAARGLDIPNVTH 462
                    56666666666666666666655555555553333221233211456788999*****************98854.5566788************* PP

  ERCC3_RAD25_C 128 liqisshfgsrrqeaqrlGriLra 151
                    +i  +   g       r+Gr  ra
     CCD24975.1 463 VINYDLP-GDIDDYVHRIGRTGRA 485
                    9986543.4455556666666555 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.6e-05      0.13     182     209 ..     272     299 ..     266     304 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.6e-05
        CMS1 182 vGtpgRildLleeeslsvdeLkrivlDa 209
                 v tpgR+ dL++ + +s++++k++vlD 
  CCD24975.1 272 VATPGRLSDLIDRGKISLSNVKYLVLDE 299
                 78************************96 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00016      0.58      29     169 ..     177     336 ..     147     338 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00016
                 EEESTTSTHHHHH.HHHHHHH-S...................-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--........-SEE CS
      ResIII  29 ikmaTGtGKTlva.aklierllkkgkee..............kflflvprkslleqtleefkkflseayke....igkkvsgdkkka.kekdstnkkil 107
                   + TG+GKT    + +  + +k g+                 +++++p+++l  q  +e kkf      +          g    +  ++ +  +++l
  CCD24975.1 177 ACAQTGSGKTGGFlFPVLSESFKTGPTAthdqgsyyqkkafpTAVVMAPTRELATQIFDEAKKFCYRSWVQpcvaY----GGAPIGNqMREMDRGCDLL 271
                 556789999977656777777777766678888888888888*******************999987766544442....2222222223457799999 PP

                 EEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.....SEEEEEESS- CS
      ResIII 108 vttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.....avllglTATp 169
                 v+t  +l+  +     ++ + + ++ ++++ DEa r+ ++    ++r+i+e  +         l ++AT+
  CCD24975.1 272 VATPGRLSDLI-----DRGKISLSNVKYLVLDEADRMLDMgfePQIRAIVEGADMtpvgeRQTLMFSATF 336
                 99999999999.....778888888889999999999998665588888444322223448888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 4052.16
//
Query:       CCD24976.1  [L=221]
Description: hypothetical protein NDAI_0E01600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-60  202.8   0.4    5.9e-60  201.7   0.5    1.4  2  IGPD      Imidazoleglycerol-phosphate dehydratase
  ------ inclusion threshold ------
      0.072   12.9   0.0       0.12   12.2   0.0    1.5  1  DUF3943   Domain of unknown function (DUF3943)
      0.077   12.9   0.1       0.15   12.0   0.1    1.4  1  HemS      Haemin-degrading HemS.ChuX domain
       0.15   12.3   0.2       0.26   11.5   0.2    1.4  1  NUMOD3    NUMOD3 motif (2 copies)


Domain annotation for each model (and alignments):
>> IGPD  Imidazoleglycerol-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.3   5.7e+03      69      84 ..      13      28 ..       6      50 .. 0.59
   2 !  201.7   0.5   1.3e-63   5.9e-60       1     144 []      58     201 ..      58     201 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.3
                TTEEEEEEEE--SS-E CS
        IGPD 69 Dealaevaldlsgrpy 84
                +e+ +++++ lsg p 
  CCD24976.1 13 NETKIQISISLSGGPL 28
                4555555555555554 PP

  == domain 2  score: 201.7 bits;  conditional E-value: 1.3e-63
                 ....HHHHHHHHHHHHHT--EEEEEEESSH...HHHHHHHHHHHHHHHHHHS..-SSB--EEEEEEEETTEEEEEEEE--SS-EEE--..-SB--TT.- CS
        IGPD   1 TgigfldhmLdqlakhggfdlkvkvkgdlevddHhtvedvgialGqalkealgdkrgikRfgsallpmDealaevaldlsgrpylvleaelkrekigel 99 
                 Tgigfldhm+++lakh+g++l ++++gdl++ddHht+ed+gialG+a+k a+g  rg+kRfg+ ++p+Deal+++++dls+rpy +++  lkrekig+l
  CCD24976.1  58 TGIGFLDHMIHALAKHSGWSLIMECRGDLHIDDHHTTEDCGIALGEAFKMAMGAIRGVKRFGTGFAPLDEALSRAVVDLSNRPYAIIDLGLKREKIGDL 156
                 9************************************************************************************************** PP

                 -HHHHHHHHHHHHHHHT-EEEEEEEE--BHHHHHHHHHHHHHHHH CS
        IGPD 100 dtelveeffeslaeaagitlhvkvlrgenahhivealfKafaraL 144
                 ++e++++f+es+aeaa+it+hv++lrg+n+hh  e++fKa+a a+
  CCD24976.1 157 SCEMIPHFLESFAEAARITIHVDCLRGKNDHHRSESAFKALAVAI 201
                 ******************************************996 PP

>> DUF3943  Domain of unknown function (DUF3943)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.7e-05      0.12      30      85 ..      58     113 ..      29     133 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.7e-05
     DUF3943  30 aglsfwesllyallgStlwElgvEfaekpSinDlivTplgGvvlGevlyrlsekil 85 
                  g++f++ ++ al+    w l++E +    i D  +T   G++lGe++  +   i+
  CCD24976.1  58 TGIGFLDHMIHALAKHSGWSLIMECRGDLHIDDHHTTEDCGIALGEAFKMAMGAIR 113
                 678888889999999999*****************************999888887 PP

>> HemS  Haemin-degrading HemS.ChuX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.3e-05      0.15      25      79 ..      33      93 ..      28      97 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.3e-05
        HemS 25 alLealeelgevmalvrNegavqektG......pvenlkesghwglvldedidLrlfldqw 79
                ++L++ ++++++ +   N++++ ++tG       ++ l ++  w l+++ + dL++  ++ 
  CCD24976.1 33 SILNKKNSTESIATQATNSQTIDIHTGigfldhMIHALAKHSGWSLIMECRGDLHIDDHHT 93
                6899999999****************94444444688888999*************99886 PP

>> NUMOD3  NUMOD3 motif (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   5.9e-05      0.26       5      36 ..      12      47 ..       9      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.9e-05
      NUMOD3  5 SeetKaKmsealkG.....ennpfyGKkhSeETkrki 36
                ++etK  +s++l+G     en  +++Kk S E+++++
  CCD24976.1 12 TNETKIQISISLSGgplklEN-SILNKKNSTESIATQ 47
                89***********99***666.666********9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1696.27
//
Query:       CCD24977.1  [L=455]
Description: hypothetical protein NDAI_0E01610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-23   82.5   0.0    6.6e-20   71.7   0.0    3.0  3  SpoU_methylase  SpoU rRNA Methylase family
      1e-15   57.8   0.1    1.8e-15   56.9   0.1    1.5  1  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b


Domain annotation for each model (and alignments):
>> SpoU_methylase  SpoU rRNA Methylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.067     6e+02      49      98 ..     157     209 ..     145     211 .. 0.70
   2 !   71.7   0.0   7.3e-24   6.6e-20       4     130 ..     281     425 ..     278     427 .. 0.84
   3 !    6.1   0.1    0.0013        12     127     141 ..     436     450 ..     431     451 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.067
                     CTTHHHHHH.EEEESSHH.HHHHHHCCCTEEEEEESTT-SEGC.CSHHHTTEE CS
  SpoU_methylase  49 aagalevle.lkvvdsle.ealkelkeegfalvatslkgksls.eidlkekva 98 
                      ++++e+++ l +++ l+ e+++ +ke++++l+ t+++  +l  +++++++v+
      CCD24977.1 157 KQNKREYFNrLWYHGRLNdELIQLCKERDVELIETDKHRLNLLtNYAVHNNVV 209
                     55666666666666666515888899999******995544433777777666 PP

  == domain 2  score: 71.7 bits;  conditional E-value: 7.3e-24
                     EEEES-SSHHHHHHHHHHHHHTT-SEEEEESGSSCTCGSHHHHHHCTTHHHHHHEEEESSHHHHHHHHCCCTEEEEEEST...T-SEGCCSHHH. CS
  SpoU_methylase   4 vvlveiedpgNlGaiaRtakafgaselvlvkprsadllnpeakraaagalevlelkvvdsleealkelkeegfalvatsl...kgkslseidlk. 94 
                     + l+e+ dp+N+Gai+R+a+ +g++ +vl+++++a +l+p ++++++g+ e +++  vd+  +++++ ++eg + + ts+    + +++++++  
      CCD24977.1 281 LFLDEVVDPHNMGAIIRSAYFLGVDFIVLTRKNCA-PLSPVVLKTSSGSMECMPIFCVDKPLQFFTDSQREGGWAFITSHvsdANGKIKDLKYIk 374
                     789***************************99998.***********************************988888877654222455442223 PP

                     ...............TTEEEEEEBTTTBS-HHHHCTSSEEEE----TTSSS CS
  SpoU_methylase  95 ...............ekvalvfGnEdkGlsnelleladrlvkIpmsgeveS 130
                                     +++lv+GnE++G++++l+ + d +v+Ip   ++e 
      CCD24977.1 375 dkildlhdlsgkcldFPIMLVIGNEGAGVRTNLRMRSDFFVEIPFGRKQEI 425
                     3344444666777779****************************9777665 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0013
                     TSSS--HHHHHHHHH CS
  SpoU_methylase 127 eveSLNvavAvaill 141
                      v+SLNv+vA+a+l+
      CCD24977.1 436 IVDSLNVSVATALLI 450
                     589*********986 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1   2.1e-19   1.8e-15       1      74 [.     145     216 ..     145     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 2.1e-19
  SpoU_sub_bind   1 liyGlhaVleaLksgrr..iekllvtegradkrleellklakkrgikvelvdkekLdklsgtanHQGvvaevkple 74 
                    +iyG++ Vl aLk+++r  +++l+ +     +   el++l+k+r+++ ++ dk++L+ l+++a+H++vv+e+kpl 
     CCD24977.1 145 YIYGTNCVLIALKQNKReyFNRLWYHGR--LN--DELIQLCKERDVELIETDKHRLNLLTNYAVHNNVVLETKPLD 216
                    8**************777******9999..33..489************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3194.02
//
Query:       CCD24978.1  [L=487]
Description: hypothetical protein NDAI_0E01620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3334  (0.185956); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.95u 0.30s 00:00:01.25 Elapsed: 00:00:00.47
# Mc/sec: 3102.71
//
Query:       CCD24979.1  [L=456]
Description: hypothetical protein NDAI_0E01630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-64  218.8   0.1    1.4e-64  218.4   0.1    1.1  1  Peptidase_C14  Caspase domain


Domain annotation for each model (and alignments):
>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.4   0.1     8e-69   1.4e-64       1     244 [.     160     449 ..     160     453 .. 0.91

  Alignments for each domain:
  == domain 1  score: 218.4 bits;  conditional E-value: 8e-69
                    EEEEEEECSTTSSTCC-STTHHHHHHHHHHHHHHHTTEEEEEEEGGEES.......-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEET..... CS
  Peptidase_C14   1 kkAliIginnYpgtkaeLrGcanDaermaklLvkrlgFevenililtdd.......ptgknirkalkwlvksadhspgDslvvhysGHGtrvpae. 88 
                    +kAliIgin Y g ++ LrGc+nDa+++ ++L +r+g+++++i+iltdd       pt++ni++a++wlv++a+  p+Dsl++hysGHG+++++  
     CCD24979.1 160 RKALIIGIN-YIGSSNALRGCINDAHNIFNFLSQRYGYSPQDIVILTDDqqdpvrqPTKANIIRAMQWLVRDAQ--PNDSLFFHYSGHGGQTKDLd 252
                    79*******.**9999**********************************************************..**************877778 PP

                    .........EEECTTC..SSEEEHHHHHHTTSTTTHGGGTTS-EEEEEESES.SSBCBEEEEEEES-SSS.......................... CS
  Peptidase_C14  89 .........civpvdv..nsliqdddirdlfggdklpslagkpktiiidaCr.gglldkgiekdtsptnk.......................... 146
                             +i+pvd+   + + ddd++d++ +++lp+++  ++t ++d+C+ g++ld ++  +t+   k                          
     CCD24979.1 253 gdeddgmddVIYPVDFqnAGELIDDDMHDIM-VEPLPQGV--RLTTLFDSCHsGTVLDLPYTYSTKGVIKepnmwkdvggeglqaamayatgnrag 345
                    8899*************95556666788877.8*******..***************99999999998889999999999999999999999**** PP

                    ........HCCCHCHHHHHHCSHHCEEECTTT.SEEEEESSSTTBSCEEETTTEE...HHHHHHHHHH.HHHTTTSBHHHHHHHHHHHHCCTTTCT CS
  Peptidase_C14 147 ........feedssskekkpekqslsklpsea.dvlllsgcqddqtSadgsengs...aftqalqkvl.eekggkislkellnkvrkrlkslkkkn 229
                            f++ ++s  ++  + +++++++ + d+++lsg++d qtSad+ e+g+   a+++a++kvl +++++  s+++ll+++rk+l ++k   
     CCD24979.1 346 lirslgsvFKTVKNSVGNNVDREKIKEVKFSQaDIIMLSGSKDSQTSADAVEDGQntgAMSHAFIKVLsSQPQQ--SYLSLLQNMRKEL-AAK--- 435
                    ********8887777777777777777665444***********************************666666..*************.555... PP

                    TSBEEEEEEEEESSS CS
  Peptidase_C14 230 gykqrPglssndltk 244
                     y+q+P+ls+++  +
     CCD24979.1 436 -YSQKPQLSASHPID 449
                    .*********98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       755  (0.0421105); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3258.87
//
Query:       CCD24980.1  [L=396]
Description: hypothetical protein NDAI_0E01640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-17   62.0   0.3    1.8e-16   60.5   0.3    1.8  1  LIAS_N       N-terminal domain of lipoyl synthase of Radical_
    6.6e-15   55.9   0.1    1.2e-14   55.0   0.1    1.5  1  Radical_SAM  Radical SAM superfamily
  ------ inclusion threshold ------
      0.073   13.3   0.0       0.13   12.4   0.0    1.4  1  Spore_GerAC  Spore germination B3/ GerAC like, C-terminal


Domain annotation for each model (and alignments):
>> LIAS_N  N-terminal domain of lipoyl synthase of Radical_SAM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.3     3e-20   1.8e-16      19     108 .]      35     117 ..      10     117 .. 0.75

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 3e-20
      LIAS_N  19 tkaastsssltdekkelleeGPdlqDFvsgdkedkseweeykgnlkrekgerlrLPswlktkiPlGknynkikndlreLnLhtvCeeaRC 108
                 ++++ +  ++  e+k+ l+ GP++qDF+ g+  +     +  ++++ +     +LPswlk  iP G+n++k+ nd+++L+L+tvC ea+C
  CCD24980.1  35 ATPTPRRRTRITEFKDALNVGPSFQDFLTGNAVNF--KPDPLADAEFQ-----KLPSWLKVPIPKGTNFTKLTNDVKKLKLSTVCQEAKC 117
                 4444455567789*****************98776..22222233333.....7************************************ PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   2.1e-18   1.2e-14       5     166 ..     156     316 ..     152     341 .. 0.80

  Alignments for each domain:
  == domain 1  score: 55.0 bits;  conditional E-value: 2.1e-18
                  SEESS--TTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSTGGGS..TTHHHHHHHHHHTCCCTEEEEEEECSSCHG..HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
  Radical_SAM   5 rgCnlrCsfCarpetvrregrgrslsveeileevkelkaekgvkevilgggeplly..pdfvellerlaklavpgiritvetngtlpd..eeklerll 98 
                    C+++C+fC++++     + ++  ++ e ++ ++++ +++g ++v+l+  + ++      + l+e  +k++++  +i+vet  +  +   e+++ ++
   CCD24980.1 156 DTCTRGCRFCSVKT----DRNPAPPDPMEPENTAEAI-KKWGLGYVVLTTVDRDDLldGGAHHLAETVRKIKEKAPSIFVETLSGDFRgdMEMVDVMA 248
                  67***********7....5666666666666666666.4555666666666666663344444444444444556667777766666666******** PP

                  HTT-SEEEEEEBSSSHHHHHHHHT.CTSHHHHHHHHHHHHHHTTSET..EEEEEEEBTTTSHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  99 elgvdrvslgleaaddekvlklmn.rghtfeevlealeklreagikr..vvdrivglpGendeeleellel 166
                  + g+d+++++ e++       +++ r+ t+ + l++l++++e  ++   +++ i+++ Ge+de++ ++l++
   CCD24980.1 249 KSGLDVYAHNMETVEA--LTPYVRdRRATYRQSLAVLKRAKET-VPTliTKSSIMLGFGETDEQVLQTLKD 316
                  **************99..678888899****************.*********************999987 PP

>> Spore_GerAC  Spore germination B3/ GerAC like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.2e-05      0.13     105     144 ..     308     353 ..     279     357 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.2e-05
                  HHHHHHHHHHHTT----S-HHHHHH..HH-HH..HH.HHHGGG.H. CS
  Spore_GerAC 105 keieealkklqeyksDilgfgeylr..rkhpk..ew.kqkkde.Wk 144
                  +++ ++lk l+e ++Di+ fg+y+r  ++h k  e+ + +k + Wk
   CCD24980.1 308 EQVLQTLKDLREVGCDIVTFGQYMRptKRHMKvvEYvHPRKFDyWK 353
                  689999*****************77443343344333444333354 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2932.45
//
Query:       CCD24981.1  [L=273]
Description: hypothetical protein NDAI_0E01650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.8e-23   81.0   0.0      1e-22   80.8   0.0    1.1  1  DLH           Dienelactone hydrolase family
     0.0073   15.8   0.0      0.017   14.6   0.0    1.5  1  Peptidase_S9  Prolyl oligopeptidase family
  ------ inclusion threshold ------
       0.17   11.2   0.0       0.25   10.6   0.0    1.1  1  6PF2K         6-phosphofructo-2-kinase
        0.2   11.2   0.0       0.29   10.7   0.0    1.2  1  LIDHydrolase  Lipid-droplet associated hydrolase


Domain annotation for each model (and alignments):
>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   2.3e-26     1e-22      10     215 ..      32     253 ..      18     255 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 2.3e-26
         DLH  10 nakkpvvvviqeifGvndnikdiserlaeeGYvalaPdlYarqa..ldpndeaeaaraldelvskvaeekvlddlkaavaylksvpevstkkvgvvGfC 106
                 +ak+p+v+v  ei+ v+  +++  +r+a++G+++++P +Y   +   + n+  e +++ +e + k++ +   +d k   + + s++e++   +gv+G+C
  CCD24981.1  32 HAKFPAVIVYSEIYQVTGPVRRLGQRIASKGFIVVMPAIYHNFVgpEALNYDVEGTDMGNEFKIKKPLKSYDEDNKLCCDLIYSMNEFNGRGIGVTGMC 130
                 348*************************************99887767899999999999999999999999***99********************** PP

         DLH 107 mGGalalllaaevpevdaavafYG..............lspekeleea.aki..kapilalfgeeDefipadevekleealkaanvdlelkvYpgagHa 188
                 +GG la+     + ++ +a  f++                    l+++ ++i   + ++ +fg+ D+++  + ++ ++++l+++ v++ +    +a+Ha
  CCD24981.1 131 LGGHLAFRGLLDK-RISCATCFFPtdihlkslglgkndD----SLARVsQEIgkDQEMILIFGTLDTHVSPEGRDLIRQTLRDRSVNFTFLEVLDAQHA 224
                 ********99999.8****************99965431....3333212221134567889***************************999999**** PP

         DLH 189 Fandsre..syneeaaedawervlelfkq 215
                 F +d+++   y++  +e     ++e f++
  CCD24981.1 225 FIRDESSkgRYDADITEACLGLMFEQFNR 253
                 ****9998899999999999988888876 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.7e-06     0.017     142     199 ..     179     237 ..     165     244 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.7e-06
                   ---EEEEEEETT-SSS-THHHHHHHHHHH--S-SEEEEEETTS-SSTTSSHHHH.HHHH CS
  Peptidase_S9 142 aypplLlihGlaDdrvppaealklvaaLqkkgknvlllifpdegHgvgkprakv.eela 199
                   ++++++li G++D+ v p+    + ++L+++ +n+ +l   d++H + ++++++ +  a
    CCD24981.1 179 KDQEMILIFGTLDTHVSPEGRDLIRQTLRDRSVNFTFLEVLDAQHAFIRDESSKgRYDA 237
                   7899*****************************************87777766645555 PP

>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   5.5e-05      0.25      85     172 ..     170     258 ..     164     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5.5e-05
                 HHHHHHHHHTS--SEEEEES---..SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTTS-HHHHHHHHHHHHHHH CS
       6PF2K  85 lkdllaylneeegqvaifDAtNt..trerRklilefveennlkvlflesicsdeeiikeNikevklsspDYkdketeeaikdflkRleny 172
                 l  + +++ +++  + if  + t  + e R+li +++++++++  fle++  ++++i+    +   +  D ++       ++f +Rl+n 
  CCD24981.1 170 LARVSQEIGKDQEMILIFGTLDThvSPEGRDLIRQTLRDRSVNFTFLEVLDAQHAFIRDESSKGRYD-ADITEACLGLMFEQFNRRLKNE 258
                 67788888888888999988665226799*****************************999998888.99999999999999*9999986 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   6.4e-05      0.29     222     266 .]     179     226 ..     163     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.4e-05
  LIDHydrolase 222 kekalvfyfgkkDhWvpeetrdelkellge..eklevde.kgipHaFv 266
                   k+++++++fg+ D  v+ e rd ++++l +   ++++ e  +++HaF+
    CCD24981.1 179 KDQEMILIFGTLDTHVSPEGRDLIRQTLRDrsVNFTFLEvLDAQHAFI 226
                   2333************************9977777776669******6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       293  (0.0163422); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2117.39
//
Query:       CCD24982.1  [L=564]
Description: hypothetical protein NDAI_0E01660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-50  171.0   0.0      4e-50  170.7   0.0    1.1  1  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    2.5e-13   50.4   0.0      4e-11   43.3   0.1    3.0  3  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
    2.5e-05   23.7   0.0       0.13   11.5   0.0    2.9  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.012   15.1   1.3      0.015   14.9   0.2    1.7  2  Fzo_mitofusin  fzo-like conserved region


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.7   0.0     9e-54     4e-50       2     294 .]     114     444 ..     113     444 .. 0.90

  Alignments for each domain:
  == domain 1  score: 170.7 bits;  conditional E-value: 9e-54
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC.... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias...evvkklnqgielllgeevvkidpgkkkvklekkke.... 92 
                   +v++G+G++ +++ ++l + +++v++v + ++ +++++ll+++  ++ e ++i++     +++ + +++++ + ++++i p  k vk+e +++    
   CCD24982.1 114 TIVILGSGWGSISLLKNLDTTKYNVIVV-SPRNYFLFTPLLPSTPMRTIELKSIIEpvrSITRRSKGEVTYYEA-KATSINPRDKSVKIESSSQkgtd 209
                  69**************************.999999999***************9999*6555555566888887.**************888878876 PP

                  TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..................SEEEEES-SHHHHHHHHHHHHHT-...... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxx...... RF
  Pyr_redox_2  93 gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..................krivvvGgGyiGvElAaalaklgk...... 166
                  + e +++yd+lv+  G+++ +++ipGv e++ +l +++++ e+++lk  +                   ++vvvGgG++GvE+Aa+l ++        
   CCD24982.1 210 KFEVDLKYDYLVVSVGAKSTTFNIPGVIEHANFL-KEIEDSEKIRLKIINniemasfllpddperkklLNFVVVGGGPTGVEFAAELQDYVRqdlkkw 306
                  55667899*******************9999999.****************************99777777****************88866678889 PP

                  ........EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEE.EEETTSCEEEESEEEE-S-EEES-HHCS..HCCT-EEE CS
                  ........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
  Pyr_redox_2 167 ........evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngekle.vvledgeeidadlvvvavGvrpstelle..eklgleld 253
                          +vtlvea++++l+++dk+l +  e+ l+ke++++kl+t+vk +d+++     +v+++ e+i++  +++a+G  ps+  ++  e++  ++ 
   CCD24982.1 307 lpdiskevKVTLVEALPNILNMFDKSLIEHTEKFLKKEKINLKLKTMVKSVDDDNI--NaMVNDKVEKIPYGVLIWATGNAPSDLCKGlmEQVEEQT- 401
                  999999999*******************************************9997..5599999999****************9999977777776. PP

                  ETTEEE--TTSBE.S.STTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 254 erggivvdeflrt.n.vpgiyaiGDvaggkggpelaqaAvqqG 294
                  + +g++++ +l+     ++i+a+GD++   g + +aq+A+q+G
   CCD24982.1 402 SPRGLLINNQLQLlGfEDSIFALGDCTFHPGLFPTAQVAHQEG 444
                  66677899999874579**********8889**********98 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.022        98       2      38 ..     115     153 ..     114     166 .. 0.88
   2 ?   -3.6   0.0       3.8   1.7e+04      58      78 ..     183     200 ..     174     203 .. 0.74
   3 !   43.3   0.1   8.9e-15     4e-11       2      70 ..     279     361 ..     278     371 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.022
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS..TTS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkll..rll 38 
                 +v++G+G+  + l ++l   + +V vv  ++ +l  +ll
  CCD24982.1 115 IVILGSGWGSISLLKNLDTTKYNVIVVSPRNYFLftPLL 153
                 8*****************************999965555 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.8
                 ECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  58 llntkveeiegsedgvesvkl 78 
                 ++++k+++i+  ++    vk+
  CCD24982.1 183 YYEAKATSINPRDKS---VKI 200
                 678889999988875...655 PP

  == domain 3  score: 43.3 bits;  conditional E-value: 8.9e-15
                 EEEECSSHHHHHHHHHHHHTT..............SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEET CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelg..............kkVtvversdkllrllDeeaskilqeklekngievllntkveeiegse 70 
                  vvvGgG +g+E+A++l+++                kVt+ve+ +++l+++D+ + + +++ l+k++i++ l+t v++++ ++
  CCD24982.1 279 FVVVGGGPTGVEFAAELQDYVrqdlkkwlpdiskeVKVTLVEALPNILNMFDKSLIEHTEKFLKKEKINLKLKTMVKSVDDDN 361
                 69***************555555555777777766899*****************************************9665 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.15   6.8e+02     225     254 ..     179     207 ..     136     250 .. 0.66
   2 !    8.4   0.0   0.00025       1.1       1      19 [.     280     298 ..     280     304 .. 0.88
   3 !   11.5   0.0   2.9e-05      0.13      82     134 ..     332     384 ..     312     390 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.15
  Pyr_redox_3 225 ekikvlfnaevkeikekeeeykvktedgkk 254
                  ++++ +++a++++i+ +++++k++++++k 
   CCD24982.1 179 GEVT-YYEAKATSINPRDKSVKIESSSQKG 207
                  3343.5556777777777777777555433 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00025
  Pyr_redox_3   1 iIiGaGPaGlaaaielkka 19 
                  +++G+GP G+++a el++ 
   CCD24982.1 280 VVVGGGPTGVEFAAELQDY 298
                  79**************986 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 2.9e-05
  Pyr_redox_3  82 ealeYlrevaksfelpiklfeeVesvkkedegfevetsketyeAkkviiAtGe 134
                   + e++++  k+++++ kl+++V+sv+ ++ +  v+ + e++    +i+AtG 
   CCD24982.1 332 SLIEHTEKFLKKEKINLKLKTMVKSVDDDNINAMVNDKVEKIPYGVLIWATGN 384
                  567899999*******************************************6 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.2   5.3e+03      96     116 ..     300     320 ..     292     356 .. 0.44
   2 ?   14.9   0.2   3.3e-06     0.015     120     156 ..     456     494 ..     443     497 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.2
  Fzo_mitofusin  96 qqelsstfarlcqqvdeteke 116
                    +q+l++ +  ++++v+ t  e
     CCD24982.1 300 RQDLKKWLPDISKEVKVTLVE 320
                    334443333333333333322 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.3e-06
  Fzo_mitofusin 120 eikelekeiekleevqkkakllr..nkaslleseLekfe 156
                    +i++l+ +i++l++v++++k++r  +k ++les+L++fe
     CCD24982.1 456 KIDQLKWKINHLDDVKNHSKKIRlsDKLTKLESKLQDFE 494
                    699*****************998889************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       690  (0.0384851); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4004.45
//
Query:       CCD24983.1  [L=340]
Description: hypothetical protein NDAI_0E01670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-40  138.6   0.0    2.9e-40  137.6   0.0    1.5  1  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom
    1.5e-39  135.7   0.1    2.2e-39  135.1   0.1    1.3  1  Ldh_1_C         lactate/malate dehydrogenase, alpha/beta C-te
    0.00039   19.5   0.0     0.0015   17.6   0.0    1.8  2  3Beta_HSD       3-beta hydroxysteroid dehydrogenase/isomerase
     0.0098   16.3   0.0      0.028   14.8   0.0    1.8  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0   6.5e-44   2.9e-40       1     141 []       2     144 ..       2     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 137.6 bits;  conditional E-value: 6.5e-44
                 EEEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEESSGGGGTTESEEEE--S-SS-TTTTHHHHHHHHHHHHH CS
     Ldh_1_N   1 vkvavvGaaGgiGqslalllankkladelaLlDiakekleGvaldlshistflsvkvkvsekeeealkdadvvvitagvprkpGetRddLlkvNakIvk 99 
                 +kv+++Ga+Gg+Gq+l+lll+ +++  el L+D++  ++eGv  dlshi+t++++ ++ + + e+alk+a++v+i+agvpr+pG++RddL+k+NakIvk
  CCD24983.1   2 TKVTILGASGGVGQPLSLLLKLSPYITELSLYDLR--NVEGVSKDLSHINTNSKCTGHGEIDIEKALKGANLVIIPAGVPRRPGMSRDDLFKINAKIVK 98 
                 69*********************************..9************************************************************* PP

                 HHHHHHHHHTTTSEEEE-SSSHH....HHHHHHHHHHTS-GGGEEE CS
     Ldh_1_N 100 eiveaiakvapnaivlvvsNPvd....iltevlkkasglpkkrvig 141
                 ++v+   k+ap a +l++sNPv+    i++e lk ++++++ +v+g
  CCD24983.1  99 SLVSYTGKFAPGARILIISNPVNsmvpIAVEQLKLMGKFQPGNVVG 144
                 ***********************99999999999999999999987 PP

>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.1   0.1     5e-43   2.2e-39       1     166 [.     146     333 ..     146     334 .. 0.89

  Alignments for each domain:
  == domain 1  score: 135.1 bits;  conditional E-value: 5e-43
                 THHHHHHHHHH....HHH..HHTS-GGGEE--EEBSSSTETTEEHHHHHTTSTTST.HHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHHHHHH CS
     Ldh_1_C   1 TtLDivRaktf....lae..kagvtprsvkvtViGgHsgvtiipllsqvkellkls.ekqleeliervqnggdevvkakkGagsatlsmAvAgakfvea 92 
                 T LD+vRa+tf    l+e    ++t++++++tViGgHsg ti+p++   k    l+ +k ++e+i+rvq+ggdevvkak+GagsatlsmA Ag+kf+e+
  CCD24983.1 146 TMLDLVRAETFvvdfLGEdsTLDKTKMDKDITVIGGHSGNTIVPVFLNKKLGETLKmKKCYDEFIHRVQFGGDEVVKAKDGAGSATLSMALAGYKFAEE 244
                 89*********66666666677889999*****************999988888888999*************************************** PP

                 HHTTH......TEEEEEEEEEESC.CCECCS......SEEEEEEEEEEETTE.....EEEE-------HHHHHHHHHHHHHHHHHHHHHHCC CS
     Ldh_1_C  93 llrdt......keilsagvyldge.vglkdq......eieyfsvPvvlgknG.....vekvleilklndfeeekleksvkeLkkeiekglef 166
                 +lr++         ++a+vyl+g  +g++ q      ++ey+++Pv l   G     ++ vl+  +l+++e + l+++vkeL  +i+kg++f
  CCD24983.1 245 ILRSLhkakstMTTIPAFVYLPGIsNGKEVQekvgnkNLEYIALPVNLV-YGsvasiDTTVLD--NLTSEETKLLNIAVKELIGNIDKGKKF 333
                 *****999877556699******9777777799***9***********9.6656666666666..8************************98 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.3e-07    0.0015       2     101 ..       6     102 ..       5     128 .. 0.85
   2 ?   -0.9   0.0      0.15   6.7e+02     161     211 ..     270     323 ..     268     327 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 3.3e-07
   3Beta_HSD   2 vtGgaGFlGralvkeLvrlee.lkevrvlDlrespelleelskvnvkkviegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrnv 99 
                 ++G++G +G+ l + L++l + + e+  +Dlr+ + ++++ls++n++   ++    + ++e+al+g+++vi  a++    g+ ++d + k+n k  +++
  CCD24983.1   6 ILGASGGVGQPL-SLLLKLSPyITELSLYDLRNVEGVSKDLSHINTN--SKCTGHGEIDIEKALKGANLVIIPAGVPRRPGMSRDD-LFKINAKIVKSL 100
                 89********98.5677777779**********************99..566668899******************9999966666.999999877777 PP

   3Beta_HSD 100 le 101
                 ++
  CCD24983.1 101 VS 102
                 76 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.15
   3Beta_HSD 161 Ngrtlkn..gg.rlyTcaLRpagiyGegdkllvpllkqlaklglalfkigdeev 211
                 Ng+++++  g+ +l  +aL    +yG   +  +++l +l+  +++l++i+ +e 
  CCD24983.1 270 NGKEVQEkvGNkNLEYIALPVNLVYGSVASIDTTVLDNLTSEETKLLNIAVKEL 323
                 555554422345788899999999**9999999999999999999998887765 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.3e-06     0.028       1      38 [.       3      40 ..       3      77 .. 0.75
   2 ?   -2.6   0.0       1.6     7e+03      35      46 ..     266     279 ..     241     307 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.3e-06
                    EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTT CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaG 38
                    kv i+Ga+G vGq l  lL+ +p+++++ l+  ++ +G
      CCD24983.1  3 KVTILGASGGVGQPLSLLLKLSPYITELSLYDLRNVEG 40
                    799************************99998888544 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.6
                     T..TTTSBHHHHSG CS
  Semialdhyde_dh  35 r..saGkklaeavk 46 
                        s+Gk+++e+v+
      CCD24983.1 266 PgiSNGKEVQEKVG 279
                     33567888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2544.26
//
Query:       CCD24984.1  [L=178]
Description: hypothetical protein NDAI_0E01680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0072   16.3   2.2       0.55   10.3   0.8    2.5  2  Vps4_C    Vps4 C terminal oligomerisation domain
  ------ inclusion threshold ------
      0.023   14.2   0.1      0.046   13.3   0.1    1.6  1  DUF3201   Protein of unknown function (DUF3201)
      0.032   13.8   1.4       0.05   13.1   1.4    1.2  1  DUF775    Protein of unknown function (DUF775)


Domain annotation for each model (and alignments):
>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0044        26      17      36 ..      71      90 ..      68      98 .. 0.86
   2 !   10.3   0.8   9.2e-05      0.55       7      60 ..     110     162 ..     108     162 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0044
      Vps4_C 17 mdipsdkllePpvtlkDflk 36
                ++++ +kl+eP + ++Dfl+
  CCD24984.1 71 KKVEVEKLKEPYLYVDDFLA 90
                578999************86 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 9.2e-05
      Vps4_C   7 gdpgaiemtwmdip.sdkllePpvtlkDflkalkkarptVskeDLekheeFTkef 60 
                 ++p++   ++++++ +d ll+P vt +  ++a+kk  +  +++ ++k+++F ++f
  CCD24984.1 110 SEPESHSQSLTQLQpKDTLLKPTVTKN--ENAIKKRTKRLTEATIKKMINFDNQF 162
                 67888899999998799*********9..69********************9998 PP

>> DUF3201  Protein of unknown function (DUF3201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   7.7e-06     0.046      26      96 ..      40     110 ..      33     172 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.7e-06
                 SEE---EEE-S-EEEETTEEEE--S-EEEEEEETTEEEEEETTEEEEEEEEEGGG--HHHHHHHHHH-SEE CS
     DUF3201  26 fkveeveevfnaylyldgkweemkyphpafevkpqievgatpesyyfvvavpkeklskefledvleafekl 96 
                 f + +++e +++   ld k +   yph +f  k ++e    p  y   +   k+++s e +e++ +a+  +
  CCD24984.1  40 FDLPNLKENLKTDTQLDTKSHICYYPHGTFIKKVEVEKLKEPYLYVDDFLALKNRISIEHVEEITKAITAS 110
                 66667788888888999*************9998877777777777678889************9998766 PP

>> DUF775  Protein of unknown function (DUF775)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.4   8.4e-06      0.05     109     171 ..      95     166 ..      92     175 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.4e-06
      DUF775 109 isiEpleqvaaqlaelkaeqsassssaassskseessaav..........tkelaqkiiknafnylaSFadka 171
                 isiE +e++++ +++++ e++++s ++ + + +  + + v          tk l++  ik++ n+   F++++
  CCD24984.1  95 ISIEHVEEITKAITASEPESHSQSLTQLQPKDTLLKPT-VtknenaikkrTKRLTEATIKKMINFDNQFVKSN 166
                 99******999999988887766665544433332222.13567889999*******************9943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1005  (0.0560544); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1372.73
//
Query:       CCD24985.1  [L=400]
Description: hypothetical protein NDAI_0E01690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      6e-65  219.2   0.0    7.6e-65  218.9   0.0    1.1  1  Pkinase         Protein kinase domain
    1.1e-27   97.0   0.0    1.5e-27   96.6   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0039   17.2   0.0     0.0056   16.6   0.0    1.3  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.046   12.5   0.1       0.73    8.5   0.1    2.2  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.9   0.0   1.7e-68   7.6e-65       4     264 .]      72     352 ..      69     352 .. 0.88

  Alignments for each domain:
  == domain 1  score: 218.9 bits;  conditional E-value: 1.7e-68
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHH....HHS CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladlle....rkg 93 
                  e +G+GsfG V+  + +et++ vA+Kk+ ++++ k+      rE++i+k ++hpn+++l+++f+e     + +l l+l+y+++    ++l+    +++
  CCD24985.1  72 TEVIGKGSFGLVFCTTLRETNELVAIKKVLQDRRFKN------RELEIMKLIQHPNVINLKYYFYEkdlddEVYLNLILDYMPQSL-YQRLRhfvhQRQ 163
                 689****************************999984......69*******************9989954555569******775.444444555999 PP

                 S--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHH CS
     Pkinase  94 slseeeakkiakqilegleylH.skgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslGvilye 189
                 s++  e+k++++q++++l+ylH +k+++HrD+Kp+N+L+d ++ +lKi+DFG ak+l+ +++  s++++++Y+APE++ ++++y++++D+Ws G++++e
  CCD24985.1 164 SMPRLEIKFYMYQMFKALNYLHnAKNVCHRDIKPQNVLVDpNSWNLKICDFGSAKQLKPTEPNVSYICSRYYRAPELIfGATNYTNQIDIWSSGCVMAE 262
                 9*********************6677**************88889****************************************************** PP

                 HHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT......SHH...HHHTTS.....................-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 190 lltgkppfsgekgkekvekeldqlekilkilg......etkeklpeasei.....................seeakdllkkllkkdpkkRltaeellqh 261
                 ll g+p+f+   g++     +dql++i+kilg             ++                        +e   ++l + lk+dp +R+ a ++l +
  CCD24985.1 263 LLLGQPMFP---GES----GIDQLVEIIKILGtpskqeI---CAMNP--NymehqfpqikpiplakvfkkeDELTVNFLIQTLKYDPLERFNALQCLCS 349
                 *********...544....8999999*****97643220...22222..1357788888999*******9888889*********************** PP

                 GGG CS
     Pkinase 262 pyl 264
                 py+
  CCD24985.1 350 PYF 352
                 **8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0   3.3e-31   1.5e-27       4     208 ..      72     272 ..      69     302 .. 0.82

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 3.3e-31
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.....SSSS..EEEEEE--TTE...BHHHH CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.....keep..llivteyvkgG...dLlkf 91 
                  ++ +G+G+fG V+  tl+    ++++ Va+K++ ++ + +      +e++imk ++hpn+++l    +     +  +  l ++++y+++     L++f
   CCD24985.1  72 TEVIGKGSFGLVFCTTLR----ETNELVAIKKVLQDRRFK-----NRELEIMKLIQHPNVINLKYYFYekdldD--EvyLNLILDYMPQSlyqRLRHF 158
                  689***************....89999*****96665555.....57****************99999554333..245899*****98655578888 PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHH.TTEEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHH CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLes.kklvHrdlaarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsks 186
                  ++++  +++   ++  +++q+ k+++yL++ k++ Hrd+  +NvL++ n+   ki+DfG a+++   + ++ + +  ++  + apE ++  + +t + 
   CCD24985.1 159 VHQR--QSMPRLEIKFYMYQMFKALNYLHNaKNVCHRDIKPQNVLVDPNSwNLKICDFGSAKQL---KPTEPNVSYICSRYYRAPELIFGATnYTNQI 251
                  8887..777777778899**********9736799************98879************...4455566667777788*****98766***** PP

                  HHHHHHHHHHHHHTTSSGTTTT CS
  Pkinase_Tyr 187 DvWsfGvllwEiftlgespypg 208
                  D+Ws G ++ E++  g+  +pg
   CCD24985.1 252 DIWSSGCVMAELLL-GQPMFPG 272
                  ***********997.7766665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.3e-06    0.0056     155     195 ..     177     216 ..     108     222 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.3e-06
                 HHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT CS
         APH 155 alaallpgelptvllHgDlhpgNllvdpddgrvtGviDfed 195
                 +++al   + ++ ++H+D++p+N+lvdp+ + +  + Df+ 
  CCD24985.1 177 MFKALNYLHNAKNVCHRDIKPQNVLVDPNSWNL-KICDFGS 216
                 4444444468999**************988877.5667765 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00016      0.73     316     350 ..     178     208 ..      31     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00016
  Pkinase_fungal 316 IkghrsLflkagiLHrDiSenNilitdskkegerk 350
                      k+++ L++ +++ HrDi  +N+l+      ++ +
      CCD24985.1 178 FKALNYLHNAKNVCHRDIKPQNVLVD----PNSWN 208
                     688999*****************986....33444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1395  (0.0778069); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 2776.33
//
Query:       CCD24986.1  [L=621]
Description: hypothetical protein NDAI_0E01700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-29  102.6   0.0    3.2e-29  101.7   0.0    1.4  1  TPP_enzyme_N     Thiamine pyrophosphate enzyme, N-terminal TP
    1.6e-20   73.3   0.0    3.1e-20   72.3   0.0    1.6  1  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai
    5.3e-13   49.0   0.0    1.2e-12   47.8   0.0    1.7  1  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
  ------ inclusion threshold ------
      0.061   13.1   0.1         11    5.9   0.0    3.0  3  NUC153           NUC153 domain
       0.11   12.0   0.0       0.21   11.0   0.0    1.4  1  Diphthamide_syn  Putative diphthamide synthesis protein


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0     9e-33   3.2e-29       2     164 ..      14     181 ..      13     187 .. 0.90

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 9e-33
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   t ae+++++Lk+l++e++fg+pG+ ++pl+d+l + +++r+    +E +aa+aAdgy+r++g +gv+++t g+G ++a++++a+ + +++ ll+++g
    CCD24986.1  14 TIAEYIFHRLKQLKIETIFGLPGEFNMPLIDKLYKIPQLRWAGDANELNAAYAADGYSRLKG-LGVLVTTFGVGELSAINGVAGSFAEHVGLLHIVG 109
                   789*********************************************************87.********************************** PP

                   E--CCCHH.....S..TC--T-CCHH...HCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHC CS
  TPP_enzyme_N  99 drptslrg.....qgvlqqeldqlal...frpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvl 164
                    +pts +      +++l +  d + +   + +v+ +++ +++ +   ++++++i++a  +r+ Pvy+ +p + +
    CCD24986.1 110 MPPTSAQTkqlllHHTLGNG-DYNVFwriASEVACHTVIINDTDLCFMEVDKCIEIA-WKRQKPVYIGIPVNQV 181
                   ********866665555533.43333343889999**********************.99999*******9865 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   8.7e-24   3.1e-20       2     104 ..     211     314 ..     210     346 .. 0.84

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 8.7e-24
                   HHHHHHHHH-SSEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEE.ESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTTT CS
  TPP_enzyme_M   2 ekaaellkaakrpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylg.mlglhgskaanealeeaDlvlalGarfddirttgse 97 
                   + +++ + ++  pvi+v+g ++r+g+ +e++e+++++++Pv+ t+mgkg+i+e++p++ g ++g ++s++++e+++ aD++++ G+ +  ++t  ++
    CCD24986.1 211 QLLLQKIYKSTHPVIIVDGCIIRHGCIDEMEEFIQRTKFPVFVTPMGKGAIDENNPNFKGvFTGSISSPSVREVVDFADFLMVMGCMLAAFNTS-TF 306
                   567899******************************************************9**************************9996654.44 PP

                   T.TTTTT- CS
  TPP_enzyme_M  98 p.efapea 104
                   +  +++++
    CCD24986.1 307 HfGYKSKN 314
                   43555443 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   3.5e-16   1.2e-12       3     139 ..     398     546 ..     396     562 .. 0.74

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 3.5e-16
                   SHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHH..................STTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE CS
  TPP_enzyme_C   3 GcltlwaarllkvkrprsyltsgglgtmGyglpaAiGakla..................kpdrevvaivGDGgflmilqelatavrrnlpitvvvln 81 
                   G++ + +++  ++ +  + ++++++g+ Gy+l+a +G  +a                   ++++v+ +vGDG+f+ ++qel+t+vr +l   +++ln
    CCD24986.1 398 GTSAFGINQT-RFPNEAQGISQALWGSVGYSLGACLGSLFAvqefqrdhnhdfhhhtqkSEKHRVILFVGDGAFQLTMQELSTIVRWKLTPYIFILN 493
                   5555545555.566666777899**************99944455566666777776533468********************************** PP

                   -SBCCCHHHHHHHHTCCTTTTSBB.BS----HHHHHHHTTSEEE.EESSH.HHHHHHHH CS
  TPP_enzyme_C  82 NegygmtggqqepfggkrksgpagkdlkpvdfaklaealGakga.rvekadveeleeal 139
                   N+gy   +  +++  ++ +      d ++ d+ +l+  + a+ a + +  +v ++++ l
    CCD24986.1 494 NHGYSVDRILHHRSDASYY------DIQQWDYLNLMNTFNATDAdTRKIITVGDMKDML 546
                   ****999998887776333......2677899999999988855433444444555444 PP

>> NUC153  NUC153 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.4     5e+03      22      28 ..     218     224 ..     217     224 .. 0.89
   2 ?    5.9   0.0    0.0032        11      14      23 ..     260     269 ..     260     271 .. 0.94
   3 ?    3.8   0.0     0.015        53       5      16 ..     543     554 ..     543     555 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.4
      NUC153  22 Fkktnpm 28 
                 +k t+p+
  CCD24986.1 218 YKSTHPV 224
                 9****96 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0032
      NUC153  14 aIDptspeFk 23 
                 aID+++p Fk
  CCD24986.1 260 AIDENNPNFK 269
                 8********9 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.015
      NUC153   5 kalFedhdFaID 16 
                 k++  d++Fa+D
  CCD24986.1 543 KDMLRDPEFAVD 554
                 67899******9 PP

>> Diphthamide_syn  Putative diphthamide synthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     6e-05      0.21     140     201 ..     450     509 ..     427     514 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6e-05
  Diphthamide_syn 140 pklkeeeeevdailyigdgrfhllslmlsnpklpvyrydpyskklteesydakkllrrRyaa 201
                      ++ ++++e+ ++il++gdg f+l+   ls+  +   ++ py   l++  y+++++l +R +a
       CCD24986.1 450 HHHTQKSEKHRVILFVGDGAFQLTMQELST--IVRWKLTPYIFILNNHGYSVDRILHHRSDA 509
                      444445778889************999999..55678**********************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4705.06
//
Query:       CCD24987.1  [L=107]
Description: hypothetical protein NDAI_0E01710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-23   80.8  10.6    9.7e-23   80.6  10.6    1.1  1  Ribosomal_60s  60s Acidic ribosomal protein
  ------ inclusion threshold ------
      0.036   15.0   0.2      0.054   14.4   0.2    1.3  1  WRNPLPNID      Putative WW-binding domain and destruction box


Domain annotation for each model (and alignments):
>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6  10.6   1.1e-26   9.7e-23       1      88 []      20     106 ..      20     106 .. 0.82

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 1.1e-26
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX--SS--STTT CS
  Ribosomal_60s   1 eptaenikkvlkaagveveaarvkllvkalegkdieellangaaklaaaaaaaaaaaaaaaaaaaaeekkkeeeeeEeedddmGfgLF 88 
                    e+t+e++ ++++aa+v ve +++++++kal +++++el+   +a++aa a+aa ++a+a+aa +aaeek++ee + Ee+dddmGfgLF
     CCD24987.1  20 EITSEKLITLTEAANVPVEGIWADIFAKALLNQNLKELMVSFSAGAAAPAGAAGSSATAGAAGEAAEEKEEEEAK-EESDDDMGFGLF 106
                    69*******************************************655555555555555555555555555555.9*********** PP

>> WRNPLPNID  Putative WW-binding domain and destruction box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2     6e-06     0.054      17      62 ..      51     102 ..      48     105 .. 0.52

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6e-06
   WRNPLPNID  17 dleLeeLllldse...aeessege..svdedeeaeee.eeeeeeeedeedsg 62 
                  + L eL+++ s    a    +g+  +    +ea+ee eeee +ee+++d g
  CCD24987.1  51 NQNLKELMVSFSAgaaAPAGAAGSsaTAGAAGEAAEEkEEEEAKEESDDDMG 102
                 5678888888777777333333333433444444444155555555455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 831.45
//
Query:       CCD24988.1  [L=199]
Description: hypothetical protein NDAI_0E01720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-67  226.4   4.2    3.6e-67  225.7   4.2    1.3  1  Ribosomal_L13e  Ribosomal protein L13e


Domain annotation for each model (and alignments):
>> Ribosomal_L13e  Ribosomal protein L13e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.7   4.2     2e-71   3.6e-67       2     180 .]       9     175 ..       8     175 .. 0.93

  Alignments for each domain:
  == domain 1  score: 225.7 bits;  conditional E-value: 2e-71
  Ribosomal_L13e   2 ipnnhfrKdwqrrvktwfdqparkkrRrearqakaakvaprpvekLrPvVrcptvrYntkvraGrGFtleElkaagiskklArtiGIavDhRrkn 96 
                     i +nhfrK+wq+rvk++fdq+++k +Rr+ar+akaak+aprp+++LrPvVr+ptvrYn+kvraGrGF+l+E+kaag+++++ArtiGIavDhRr+n
      CCD24988.1   9 ILKNHFRKHWQERVKVHFDQAGKKVSRRNARAAKAAKIAPRPLDLLRPVVRAPTVRYNRKVRAGRGFSLAEVKAAGLTAAYARTIGIAVDHRRQN 103
                     789******************************************************************************************** PP

  Ribosomal_L13e  97 kseeslkaNveRLkeYkskLilfprkakkpkkgdaskeelkaakqvkvaavlpikkeakkekaraiteeekkfkayrtlrkara 180
                     +++e ++ Nv+RLkeY+sk+i+fpr+ k+p+        ++  + +++aa++pi+++++++++ra++++   ++a+rtlr ar+
      CCD24988.1 104 TNQEIFELNVQRLKEYQSKIIVFPRNGKAPE--------VE--QVLSAAATFPIAQPTTDVETRAVEDN--GESAFRTLRLARS 175
                     *************************944442........22..34466789*************99888..589******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       890  (0.0496402); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.28s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 1365.95
//
Query:       CCD24989.1  [L=143]
Description: hypothetical protein NDAI_0E01730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-32  111.7   0.1    3.3e-32  111.5   0.1    1.0  1  Ribosomal_S9  Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.1   1.9e-36   3.3e-32       1     121 []      11     143 .]      11     143 .] 0.94

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 1.9e-36
                   EECTTEEEEEEEEESSSEEEETTEECCHHSTTSCHHHHHCHHHHHTTTSS..SEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHH.....HHHHHHC CS
  Ribosomal_S9   1 GrrKesvArvwikegkgkilvngksleeYfkeeaarekvleplkltgllg..kfdvfvkvkgGGlsgqaeAirlgiaraLvalek.....eekkeLk 90 
                   G++K+++A +++k+gkg i+vng ++   ++ e  r kv+epl l+gl +  ++d++v+v+gGG+++q++Air++ia++Lv++++     ++k+eLk
    CCD24989.1  11 GKKKSATAVAHVKAGKGLIKVNGSPITL-VEPEILRFKVYEPLLLVGLDKfsNIDIRVRVTGGGHVSQVYAIRQAIAKGLVSYHQkfvdeQSKNELK 106
                   89*************************9.877**************9987767******************************98788755599999 PP

                   ......TCCCTS-B--------TTSSCTTB----S-- CS
  Ribosomal_S9  91 ......kaglltrDpRvvErkKtgkkkARkkyqwskR 121
                         +++ll +D+R+ E+kK+g k+AR+++q+s+R
    CCD24989.1 107 kaftsyDRTLLIADARRPEPKKFGGKGARSRFQKSYR 143
                   7777777****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1052.97
//
Query:       CCD24990.1  [L=240]
Description: hypothetical protein NDAI_0E01740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
      0.054   12.2   0.2        6.3    5.4   0.0    2.1  2  DHDPS       Dihydrodipicolinate synthetase family
       0.11   11.4   0.8       0.16   10.9   0.8    1.3  1  Amidase     Amidase
       0.45   10.4   7.7       0.24   11.3   3.3    2.4  2  PKcGMP_CC   Coiled-coil N-terminus of cGMP-dependent protein 
        1.1    9.2   5.2         12    6.0   0.3    3.0  3  DUF1967     Domain of unknown function (DUF1967)
        3.5    7.5  12.4       0.17   11.7   3.2    2.3  2  DivIC       Septum formation initiator
        4.8    6.8   8.3        5.7    6.6   0.7    2.9  3  Plasmo_rep  Plasmodium repeat family


Domain annotation for each model (and alignments):
>> DHDPS  Dihydrodipicolinate synthetase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0029       8.6     182     247 ..      19      83 ..       5     126 .. 0.87
   2 ?    5.4   0.0    0.0021       6.3     146     186 ..     148     188 ..     145     206 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0029
                 EEEES.-GGGHHHHHHTT-SEEEESCHHCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCCCCS CS
       DHDPS 182 viysG.ddelllsalslGadGvisvtsniagermrqlikalkeGdlaeaaelnekllplikilfaep 247
                 vi sG dd   l+  ++ ++G is  +   + + +q++ a ++   a+  +ln++l +l + l +++
  CCD24990.1  19 VIISGtDDTKQLHDTPVNVKGSISHHAQAKPGIENQVLSADEA--SATIVHLNKQLGRLQQLLNQKK 83 
                 68899778889999*************************9999..99999******99999998874 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0021
                 HHHHHHHTSTTEEEEEE-SS-CTHHHHHHCCCSTTSEEEES CS
       DHDPS 146 etvkrLaelenivgvKeavgdleevikikkevgkdlviysG 186
                 + ++rL+++ n  +vK+  ++l+  +++k++++++  iys 
  CCD24990.1 148 KEINRLTKILNDNSVKDNLRNLSPSVDRKESISSNSEIYSS 188
                 579***********************************996 PP

>> Amidase  Amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.8   5.2e-05      0.16     266     362 ..      30     130 ..      21     163 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.2e-05
                 HHCTT-EEEEEE-CCGGGHHH.HHHHHHHHHHHHHTTT-SSSSS...---SS-SCCCCCCCHHHHCCS-HHHHHHHHHHHHHCSCCCCCCCHHHHHHHH CS
     Amidase 266 LeeaGhevvevelpsleeals.lyylilvaeassnlarylgvry...erlsetkvlsellpksraellgeevkrrielgnyalsaeasskyylkaqkvr 360
                 L ++ ++v+  +++++++a + + +++l a+ +s++  +l+++    ++l + k+l+++l ++ a+ l++  ++ ++l++ +++++++++y++k+   r
  CCD24990.1  30 LHDTPVNVKG-SISHHAQAKPgIENQVLSADEASATIVHLNKQLgrlQQLLNQKKLRNMLLENNAKSLKSNNEVERKLHKEQFDQMKYQSYLEKEKLLR 127
                 5555555544.899*******999******999999999999988999**************************************9999999888877 PP

                 H.H CS
     Amidase 361 r.l 362
                   +
  CCD24990.1 128 NlR 130
                 633 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.24   7.1e+02      26      34 ..     101     109 ..     100     110 .. 0.73
   2 ?   11.3   3.3   8.1e-05      0.24       3      27 ..     129     153 ..     127     157 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.24
   PKcGMP_CC  26 ELrskLDKf 34 
                 E  +kL+K 
  CCD24990.1 101 EVERKLHKE 109
                 667999995 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 8.1e-05
   PKcGMP_CC   3 lllKDERIRELEkrlaekdeEIqEL 27 
                 l+lKD +IR   kr+  k +EI+ L
  CCD24990.1 129 LRLKDMKIRKYKKRIISKNKEINRL 153
                 89********************988 PP

>> DUF1967  Domain of unknown function (DUF1967)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.016        47      31      56 ..      69      94 ..      61      95 .. 0.87
   2 ?   -0.6   0.1      0.42   1.3e+03      18      39 ..     101     122 ..      98     139 .. 0.63
   3 ?    6.0   0.3    0.0039        12      28      52 ..     144     168 ..     130     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.016
                GGGHHHHHHHHHHTTHHHHHHTTT-- CS
     DUF1967 31 eeavrrfarrLkklGvedaLrkaGak 56
                +++++r+++ L+++ + + L +  ak
  CCD24990.1 69 NKQLGRLQQLLNQKKLRNMLLENNAK 94
                6889****************999987 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.42
                 HHHHHHTTEEE-TGGGHHHHHH CS
     DUF1967  18 kierlvkqtnfeneeavrrfar 39 
                 ++er +++ +f++ +   ++++
  CCD24990.1 101 EVERKLHKEQFDQMKYQSYLEK 122
                 6777777777777666666643 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0039
                 E-TGGGHHHHHHHHHHTTHHHHHHT CS
     DUF1967  28 feneeavrrfarrLkklGvedaLrk 52 
                 +++++ ++r+ ++L+ + v d Lr+
  CCD24990.1 144 ISKNKEINRLTKILNDNSVKDNLRN 168
                 566777*****************97 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.2   5.7e-05      0.17      18      59 ..      64     104 ..      60     111 .. 0.89
   2 ?    0.8   1.8      0.14   4.1e+02      20      52 ..     123     155 ..     114     169 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.7e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXX CS
       DivIC  18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyiee 59 
                 ++  l++++ +lq+ l+++k +n+ Le + k L ++ + +e+
  CCD24990.1  64 TIVHLNKQLGRLQQLLNQKKLRNMLLENNAKSL-KSNNEVER 104
                 7889*****************************.57777776 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XX CS
       DivIC  20 kqlkqeiaalqaelaklkaeneeLeaevkdLks 52 
                  +l +++  +  ++ k k+++ + ++e+++L++
  CCD24990.1 123 EKLLRNLRLKDMKIRKYKKRIISKNKEINRLTK 155
                 555666666667778888888888888888765 PP

>> Plasmo_rep  Plasmodium repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2      0.86   2.6e+03       2       6 ..      98     102 ..      98     103 .. 0.72
   2 ?    4.3   0.1    0.0096        29      10      19 ..     141     150 ..     140     154 .. 0.92
   3 ?    6.6   0.7    0.0019       5.7       1      10 [.     180     189 ..     180     193 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.86
  Plasmo_rep   2 sDnEv 6  
                 s+nEv
  CCD24990.1  98 SNNEV 102
                 67776 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0096
  Plasmo_rep  10 kqEieqNrEI 19 
                 k++i++N+EI
  CCD24990.1 141 KRIISKNKEI 150
                 789******9 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0019
  Plasmo_rep   1 FsDnEvYspk 10 
                 +s++E+Ys+ 
  CCD24990.1 180 SSNSEIYSSQ 189
                 69******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1915  (0.10681); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1775.15
//
Query:       CCD24991.1  [L=450]
Description: hypothetical protein NDAI_0E01750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-35  121.1   0.0      8e-35  120.2   0.0    1.5  1  DEAD         DEAD/DEAH box helicase
    4.7e-28   97.8   0.1    1.1e-25   90.1   0.1    2.8  3  Helicase_C   Helicase conserved C-terminal domain
    5.8e-08   32.9   0.0    1.2e-07   31.9   0.0    1.5  1  ResIII       Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
       0.14   13.0   0.2       0.33   11.8   0.2    1.6  1  ANAPC_CDC26  Anaphase-promoting complex APC subunit CDC26


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.2   0.0   1.8e-38     8e-35       2     173 ..      91     258 ..      90     261 .. 0.94

  Alignments for each domain:
  == domain 1  score: 120.2 bits;  conditional E-value: 1.8e-38
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTT.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxx.. RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldng.. 97 
                 ++Q+++ip+ ++g dvl++a+ G GKT++f++  lq++       +  +++++  reLa q+ n++ +f ky  d+++ +++gg++ +++ + l+n+  
  CCD24991.1  91 EVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLD--PVPGEVAVVVICNARELAYQIRNEYLRFSKYmPDVKTAVFYGGTPINKDAELLKNKdt 187
                 69************************************3..6888899999*********************777*******************87778 PP

                 .CSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  98 .vdivvgtpgrlddllstgklnlsqvrflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                  ++ivv+tpgrl  l+++++++ls+v+ +V+DE+d++l++ ++++++++i++++       + ++qv+++SATl++++
  CCD24991.1 188 aPHIVVATPGRLKALVRDKYIDLSHVKNFVIDECDKVLEElDMRRDVQEIFRAT-------PRDKQVMMFSATLSQEI 258
                 9***************************************9*************.......55667********9776 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0098        44      18      73 ..     136     195 ..     122     197 .. 0.79
   2 ?   -2.9   0.0       1.9   8.5e+03      12      25 ..     240     253 ..     209     271 .. 0.61
   3 !   90.1   0.1   2.5e-29   1.1e-25       2     111 .]     297     405 ..     296     405 .. 0.92

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0098
                 EEEEEESSHHHHHH..HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  18 kilifvntidrlek..vklllekk...gikvavlhgelpqnereeileqfnkgesdvLiat 73 
                  +++++n ++ +++   ++l+ +k   ++k+av++g +p n+  e l++  +   ++++at
  CCD24991.1 136 AVVVICNARELAYQirNEYLRFSKympDVKTAVFYGGTPINKDAELLKNK-DTAPHIVVAT 195
                 579999****777778888844447889*************999999876.4344477766 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.9
                 HTTTTSEEEEEESS CS
  Helicase_C  12 leeeggkilifvnt 25 
                  + +++++++f+ t
  CCD24991.1 240 ATPRDKQVMMFSAT 253
                 33344444444444 PP

  == domain 3  score: 90.1 bits;  conditional E-value: 2.5e-29
                 HHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHH CS
  Helicase_C   2 kleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsy 100
                 k ++l +ll    e ++++ifv++++r+++++ ll+ +++ ++++hg ++q+er++  ++f++ e ++ ++tdv +rGidi+++nl in+dl  ++++y
  CCD24991.1 297 KNRKLAQLL-DDLEFNQVIIFVKSTNRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTSEPDQY 394
                 677888888.78899*************98555557778************************************************************ PP

                 HHHHTTSSSTT CS
  Helicase_C 101 iqriGRtgRag 111
                  +r+GR+gR+g
  CCD24991.1 395 LHRVGRAGRFG 405
                 *********86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   2.6e-11   1.2e-07      26     169 ..     105     254 ..      86     256 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 2.6e-11
                 EEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG..........GEEEESSS-B--.......-SEEEEEHHHHHHT CS
      ResIII  26 rglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseayke......igkkvsgdkkkakekdstnkkilvttiqsldad 117
                  +l ++  G GKT v  +++ ++l    +e  ++++++ ++l  q ++e+ +f++   +        g+ +++d +   ++++t  +i+v+t  +l+a 
  CCD24991.1 105 DVLCQAKSGLGKTAVFvLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVktavfyGGTPINKDAELL-KNKDTAPHIVVATPGRLKAL 202
                 56778899********999********9999****************9998777655444333555333344444444.788999************** PP

                 H........HHHTTT-SEEEEETGGGTTS.TTTHH.HHHT---....SEEEEEESS- CS
      ResIII 118 seeeeeeseellrdrfdviiiDEaHrlgakkswre.ilekfke....avllglTATp 169
                        ++  + ++ + ++iDE+ ++ ++  +r+ + e f++    + ++ ++AT+
  CCD24991.1 203 V-----RDKYIDLSHVKNFVIDECDKVLEELDMRRdVQEIFRAtprdKQVMMFSATL 254
                 *.....777888888889***********855555566666444445889999**97 PP

>> ANAPC_CDC26  Anaphase-promoting complex APC subunit CDC26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   7.4e-05      0.33      13      54 ..       6      47 ..       5      63 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.4e-05
  ANAPC_CDC26 13 seDiaeyederqrqkeqaaqqqrsqasastsqasdtdaddft 54
                 +eD+ ey d+ q+++  a++++ ++++ + +++ ++ + + +
   CCD24991.1  6 EEDLLEYSDNEQEIQVDATNAATESTEGAAGATDASATTEGD 47
                 69*****************99999887666665555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3169.05
//
Query:       CCD24992.1  [L=178]
Description: hypothetical protein NDAI_0E01760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        9.2    4.7  10.4         10    4.5  10.4    1.1  1  Macoilin  Macoilin family


Domain annotation for each model (and alignments):
>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5  10.4   0.00058        10     279     364 ..      63     149 ..      16     163 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.00058
    Macoilin 279 vdsklqekeymenkskskrlsksessgsesellveesvkskssssssssnknskkas.agsagssnssskkhse.ssksvtssssskn 364
                   + + + +y e+ + s +l   +s +s ++ + +++++s+ s+++ +s++n +++s ++s++s  ss+ + +  +  s ++s+s++ 
  CCD24992.1  63 RTATQASLSYSEDALLS-QLMDASSASSIKTSTIRGKISSEFSTNTLASSSNLEENSiSSSVNSKVSSPTRENIvKHTSNANSTSTNA 149
                 22333334444444443.4444556666666666677776666666555555544431445566666665443212223333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1029  (0.0573931); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1415.00
//
Query:       CCD24993.1  [L=245]
Description: hypothetical protein NDAI_0E01770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-11   43.3   0.3    2.9e-11   43.3   0.3    2.2  3  SRP1_TIP1  Seripauperin and TIP1 family
  ------ inclusion threshold ------
       0.19   12.3   0.3       0.19   12.3   0.3    2.5  2  Alpha_GJ   Alphavirus glycoprotein J


Domain annotation for each model (and alignments):
>> SRP1_TIP1  Seripauperin and TIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.27   2.4e+03      45      78 ..      21      55 ..      19      59 .. 0.61
   2 !   43.3   0.3   3.2e-15   2.9e-11       5      89 ..      60     145 ..      56     152 .. 0.86
   3 ?   -1.8   0.3      0.36   3.3e+03      43      62 ..     200     219 ..     165     231 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.27
   SRP1_TIP1 45 vlsvyaalatat.ddsYttllseidfaevssmitg 78
                +l+v aa +t+t ++  t+ ++++  +++++ + +
  CCD24993.1 21 ILKVQAASVTKTsTNGATNTVTSFASQTITNSAQM 55
                56666666565556666677777777777666555 PP

  == domain 2  score: 43.3 bits;  conditional E-value: 3.2e-15
   SRP1_TIP1   5 aaqteaevaelevllnDvksnlkeYlslakansgfslPsgvlsvyaalatat..ddsYttllseidfaevssmitglPWYssRLepa 89 
                 +++ ++++ ++ ++l+D+ s l +Y+s+++ +++f+lP++++++y ++a      d    + ++++f++ +++it  PWYss L+ a
  CCD24993.1  60 SEAANVDMPFFMAFLDDFGSQLPQYTSYMA-QNHFTLPQAIADYYYHIAFLPdtADLQADIANTFPFNQFQTFITAFPWYSSLLSHA 145
                 4567889999******************88.668*************9775522677889999*******************88765 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.36
   SRP1_TIP1  43 sgvlsvyaalatatddsYtt 62 
                 s+   v +  +t+t++s tt
  CCD24993.1 200 SSSSFVTTSTTTTTTSSSTT 219
                 33333344444444555454 PP

>> Alpha_GJ  Alphavirus glycoprotein J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.3   2.1e-05      0.19       4      65 ..       7      68 ..       4      99 .. 0.81
   2 ?   -4.3  12.7         2   1.8e+04      39      78 ..     171     212 ..     145     233 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
    Alpha_GJ  4 llfvvgaWvaalvtdltpkaalatgttatvgaana.aavanatganatsaaaastiaatvgap 65
                l  +++ W +  +  l  +aa  t t+ t ga+n+ ++ a+ t  n++   +a + aa v+ p
  CCD24993.1  7 LFQIITIWTICCIGILKVQAASVTKTS-TNGATNTvTSFASQTITNSAQMVSARSEAANVDMP 68
                6668999***************99655.88888875666777777777777777777777776 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 2
    Alpha_GJ  39 aavanatganatsaaaastiaa..tvgapptdstvaaetPgp 78 
                 ++  +a ++  ts +a+sti++  ++++p++ s v++ t  +
  CCD24993.1 171 SSSLDAPSSSITSRKASSTISSksITSSPSSSSFVTTSTTTT 212
                 333344444445555555544311334444444333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1454  (0.0810977); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 1932.62
//
Query:       CCD24994.1  [L=1007]
Description: hypothetical protein NDAI_0E01780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-12   44.9   0.3      3e-11   43.2   0.3    1.9  1  RIC1      RIC1


Domain annotation for each model (and alignments):
>> RIC1  RIC1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.3   1.7e-15     3e-11      74     250 ..     778     995 ..     748     997 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 1.7e-15
        RIC1  74 rletktqlfLhhvLrqlLernlleeAlelassyqklsyFahaLElLLh.evLeeeadakepsdaseeeealLpavvefl..defpeyldvvvqCaRKte 169
                 rl +k  ++L++v+   +e++      e+  ++++l++++ aLE +L  ++L+++   k          al++   ef    + ++ l++v +C+RK+e
  CCD24994.1 778 RLVVKHDIYLDKVICAKIEQEVDP--EEITIEFRQLKHYNFALEKILSsKMLSDDPLDKII--------ALIKYSDEFGdpTKHTNLLEIVSNCLRKIE 866
                 666777788888888888666444..46667889999999999977765677776665544........577777777633455569************ PP

        RIC1 170 varWrtLfdvlg.sPkeLFeecleleklktAasyLlvL.......................................qnleeleess........qdav 220
                  ++W++Lf+ l  +P++L+  c++ ++ +  + ++lv                                         +l + ee +        + a 
  CCD24994.1 867 TKYWNKLFTSLQmTPRDLLGYCIDGNESRILGILFLVFlnydetdlvqdlkknastsgtetipedetvtqyktdnsvVSLVKDEELMlqilrvlvTSAA 965
                 ******************************999999998********9999999999999999988887777776553333333333333333335555 PP

        RIC1 221 rLLklaleekdwelckdLlRFlaaidesge 250
                 +  +++ + + w++c +L+R ++ +d++++
  CCD24994.1 966 TATDATKAVDAWDMCFQLARLMKELDKENN 995
                 55555666789***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 7226.26
//
Query:       CCD24995.1  [L=91]
Description: hypothetical protein NDAI_0E01790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-20   71.7   4.8    5.9e-20   71.3   4.8    1.2  1  COX6B     Cytochrome oxidase c subunit VIb
  ------ inclusion threshold ------
      0.097   12.6   0.4       0.14   12.1   0.4    1.3  1  APOBEC_C  APOBEC-like C-terminal domain
       0.18   11.7   0.2       0.17   11.8   0.2    1.1  1  MYT1      Myelin transcription factor 1


Domain annotation for each model (and alignments):
>> COX6B  Cytochrome oxidase c subunit VIb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   4.8   9.9e-24   5.9e-20       1      75 [.      25      85 ..      25      86 .. 0.95

  Alignments for each domain:
  == domain 1  score: 71.3 bits;  conditional E-value: 9.9e-24
       COX6B  1 araPnknqrkaCwearddyfkCldkkgeekaekkeeqdekkCkaekkeyesnCaksWveyfkekrvlekreerll 75
                +r+P++nq+++Cw+a+ dy+kC++ kge         + ++Ck + k+y+s+C+ +W+e+++e+     re++++
  CCD24995.1 25 PRFPQQNQTRHCWQAYVDYHKCINIKGE---------EFAPCKVFWKTYQSLCPVDWIEKWDEQ-----REKGIF 85
                69**************************.........***************************.....677666 PP

>> APOBEC_C  APOBEC-like C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   2.3e-05      0.14      43      69 ..      34      66 ..      18      69 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.3e-05
                HHHHHHHBTT......TT-S----TTHHHHHHH CS
    APOBEC_C 43 ehcWenFVdn......egepfkpwekleensel 69
                +hcW+ +Vd+      +ge+f p + + + +++
  CCD24995.1 34 RHCWQAYVDYhkciniKGEEFAPCKVFWKTYQS 66
                7********999999999999997777777665 PP

>> MYT1  Myelin transcription factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   2.9e-05      0.17     163     207 ..      12      55 ..       2      90 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.9e-05
        MYT1 163 lepmspqrqaslltsrcyqlseaqdcWdlPvdYtkikrlkeeeke 207
                 +e+ sp +++ +   r+ q+ + + cW+  vdY k  ++k ee  
  CCD24995.1  12 KEDESPLHTVGF-DPRFPQQNQTRHCWQAYVDYHKCINIKGEEFA 55 
                 677788888888.99999*****************9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 672.39
//
Query:       CCD24996.1  [L=746]
Description: hypothetical protein NDAI_0E01800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-11   43.4   0.1    5.6e-11   42.2   0.1    1.6  1  DNA_mis_repair  DNA mismatch repair protein, C-terminal domai
    1.7e-09   37.6   0.1    4.7e-09   36.2   0.1    1.8  1  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
    1.1e-06   29.2   0.1    3.2e-06   27.6   0.1    1.8  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l
  ------ inclusion threshold ------
      0.044   13.7   0.0       0.24   11.4   0.0    2.3  1  EF-hand_6       EF-hand domain


Domain annotation for each model (and alignments):
>> DNA_mis_repair  DNA mismatch repair protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.1   1.2e-14   5.6e-11      18     117 ..     253     356 ..     235     358 .. 0.86

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 1.2e-14
                     EEETTEEEEEEEE-CCG-BTTGGEEEEEETTEEE--H.....HHHHHHHHHHHCCSSSSSB-EEEEEEEESSGGEE-TSSTT----EETTHHCHH CS
  DNA_mis_repair  18 keeeqlkieGfiskpelsrskrdkqflfvNgRlvksk.....elkkaireaYkellpkgrypvvvLnleidpeevDvNvhPtKreVrfqdeeevi 107
                     k + ++ + ++ +++++ + k+   fl  N+R+++ +     +++k++++ Yk  ++  +  v+++nl+ dp+ +D+N++P+K++  f+d + ++
      CCD24996.1 253 KVSLEVILPTMRPESDIINVKKPLRFLSLNNRAMSLQleighSINKLLNSLYK-SFQMLNPIVWYINLNCDPKLIDFNIEPEKNDALFKDFDFIL 346
                     33444667777788889999***************999888899999999**9.88889999********************************* PP

                     HHHHHHHHHH CS
  DNA_mis_repair 108 eaieealkea 117
                     e+i++ lke 
      CCD24996.1 347 EQIKACLKEF 356
                     ****999886 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   1.1e-12   4.7e-09       4      86 ..      24     106 ..      21     145 .. 0.74

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.1e-12
  HATPase_c_3   4 ekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelkn.alrlatsskeakrkstslGkkGi.GlklAslslgk 86 
                  ++++ el+dNs+d+ a++++i v+ + g  + i+++D+G+G+++++     l+  ts+ e+ ++   l++ G+ G   A +++++
   CCD24996.1  24 TSVVHELLDNSVDSGATTIYIDVDSKTGGCEYISVKDNGSGVEKDDRSVmCLNHTTSKIENFEDLSNLSSLGFrG--EALFMIAN 106
                  5799***********************999**************9866545666666555555655666666533..55555554 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   7.2e-10   3.2e-06       7     107 ..      24     156 ..      20     160 .. 0.65

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 7.2e-10
                 HHHHHHHHHHHHHHHSTTTEEEEEEEEEE..TEEEEEEEESSSSSTTHHHT.....GTCSTTCH.......HCSTCHTSTSSSHHHHHHHHHHHHTTTE CS
   HATPase_c   7 rqiisnlvdNavkfatkageieveikase..ddlvisveDnGiGipkedlk.....klfekfsq.......ddstkrggggtGlGlsivkklvelmgGe 91 
                 + ++ +l+dN+v+  + a++i + +++ +  +   isv+DnG G+ k+d+      +     ++       d s+ ++ g +G  l +  +l++  +G+
  CCD24996.1  24 TSVVHELLDNSVD--SGATTIYIDVDS-KtgGCEYISVKDNGSGVEKDDRSvmclnH-----TTskienfeDLSNLSSLGFRGEALFMIANLCT-DKGS 113
                 5799*********..5899*******5.347999*****************555441.....44345445445556666666666776655444.2345 PP

                 EEE...........................EEETTTEEEEEEE CS
   HATPase_c  92 iwv...........................esepgrGttftft 107
                 +++                           +++ g Gtt+t++
  CCD24996.1 114 MEIatrtenepigekwfvqkngsilndkryKTSYGTGTTITVR 156
                 5554455444444444455555555444445555779998874 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.3e-05      0.24       2      25 ..     194     217 ..     193     220 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 5.3e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrka 25 
                 +r  F l   d++Gki++++l++ 
  CCD24996.1 194 IRFCFSLVSLDKNGKITQKQLQQS 217
                 6889*****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5411.35
//
Query:       CCD24997.1  [L=475]
Description: hypothetical protein NDAI_0E01810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-96  321.2  12.5      1e-95  320.8  12.5    1.1  1  Nramp     Natural resistance-associated macrophage protein


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.8  12.5  5.6e-100     1e-95       3     351 ..      33     402 ..      31     406 .. 0.92

  Alignments for each domain:
  == domain 1  score: 320.8 bits;  conditional E-value: 5.6e-100
       Nramp   3 tdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerlpkkvsillwilaelaiiatdlaeviGaAialnllfgipllvgvlitavl 101
                 t++++Gaq+ ykLl  +++s+l+ai+lq l+++LG vTg +lae++r++lp+k+++ l++ aelaiiatdlaev+G+Aial++lfgipl++gv++t+++
  CCD24997.1  33 TSVSGGAQYKYKLLFSIFISNLFAIVLQCLCVKLGTVTGYDLAENCRRNLPRKINLTLYFFAELAIIATDLAEVVGTAIALQILFGIPLTWGVILTVLD 131
                 899************************************************************************************************ PP

       Nramp 102 vllllfl.....e.kggyrklEaliialvlvialsFiaelflvkpdwge.vlkglvvPslpg...keslllavgilGatvmphnlflhsslvqerkiti 190
                 vl++l++     +  + +r +E ++  lv++ +++F++elf ++++ ++ +++g++ Ps      k++l++ +gilGatvmph l+l sslv+ r +++
  CCD24997.1 132 VLVILLFykpeeQsMKRVRLFELFVGTLVIATCFCFLLELFKINIPHKKtLFEGFL-PSKVIfedKQALYISLGILGATVMPHSLYLGSSLVKPRLQEH 229
                 *****995554322356999***********************9888661566666.99766777******************************9666 PP

       Nramp 191 dr..........seke....ealkyeriDtiial.ivaflinlailivaAavly.sggkdvesledaaeaLepllGskaasvlFaigLlaaGlsStitg 273
                 d           s         l+y+  + ii+l ++a ++n+ailiva a l+ +  ++ ++l +++e+L ++++ +aa ++Fa+++l +G+s+ i++
  CCD24997.1 230 DMkkygkvearpS--LsaikYSLNYAYAELIISLfLIATFVNSAILIVAGASLFgQPDAADADLLSIYELLVHYIS-PAAGLIFALAMLCSGQSAGIIC 325
                 5588887766552..04466789999********8899****************8888899***************.7********************* PP

       Nramp 274 tlagqyvmegflglrislwlrrlitralafvpalivilligaelelvkllvlsqvllslllPfaliplllltsskklM 351
                 t+agq+v egfl++++++w+ rl tr++a++p l+v+l +g+ +   ++l lsqv+lsl+lP++ +pl+++t  +klM
  CCD24997.1 326 TMAGQIVSEGFLEWSLPPWATRLCTRLIAIIPCLFVTLTMGERGI-SDILNLSQVVLSLILPIVSAPLIYFTACRKLM 402
                 *********************************************.*******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3618.33
//
Query:       CCD24998.1  [L=548]
Description: hypothetical protein NDAI_0E01820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-06   26.6   1.9    3.4e-05   23.8   1.8    2.4  1  Bromodomain  Bromodomain
  ------ inclusion threshold ------
        7.9    4.5  10.7         11    3.9  10.7    1.1  1  FSA_C        Fragile site-associated protein C-terminus


Domain annotation for each model (and alignments):
>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   1.8   3.8e-09   3.4e-05      22      83 ..      37     114 ..      14     115 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 3.8e-09
                  -GCCSTTHHHH.............SS---HHHHHHHHHTT--S....SHHHHHHHHHHHHHHHHHHSHTTSHHHHHHH CS
  Bromodomain  22 dpeefpdyyavi............kkPldLstIkkklesnkYk....sladfeadlkllfsNarkyngegsviyelae 83 
                  + + ++ y+++i            + +l L+tI++k ++++Y      ++++++d++l++   ++y+++g+ +y +++
   CCD24998.1  37 PAKIYESYFKFIknrsnlegvlrnEDKLALTTINEKFDNKEYIpeqhGIYKLYHDITLVCILLIHYYPQGTKNYYMVD 114
                  444455555533333333333333899999************866667**************************8876 PP

>> FSA_C  Fragile site-associated protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  10.7    0.0013        11     520     613 ..     291     389 ..     278     404 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0013
       FSA_C 520 lkpyltdevlkekkaksstsltpklmsaakssleslqgsqdsi..aiattasavelndatsstiasaatasslsstkstvtivv...stndskdgaklg 613
                 lk  +  ++lkekk     + + +++   ++ +e+ + + +++  ai++t+++    da  + + +  t   + st+ t+ti++   + n  k    +g
  CCD24998.1 291 LKKVAYMNILKEKKIVEEKETSEEKLDKEETIIEPANTADTTVaaAITKTTNTPGTADAIETPTNTVNTPNITGSTNNTTTITTdttTINARKMEGDMG 389
                 66677889******97777777999999*******9888777765566666665555555555555555555555555555554211445555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4061.23
//
Query:       CCD24999.1  [L=1270]
Description: hypothetical protein NDAI_0E01830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-28   98.2   0.0    3.1e-28   98.2   0.0    2.9  4  HA2          Helicase associated domain (HA2)
    1.1e-14   54.6   0.0    3.6e-14   52.9   0.0    1.9  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    1.3e-13   51.3   1.2    1.7e-10   41.3   0.0    3.7  3  Helicase_C   Helicase conserved C-terminal domain
    9.3e-08   32.0   0.0    2.5e-07   30.6   0.0    1.7  1  DEAD         DEAD/DEAH box helicase
    0.00014   22.2   0.4    0.00051   20.3   0.0    2.0  2  AAA_22       AAA domain
    0.00056   19.1   0.0     0.0012   17.9   0.0    1.5  1  T2SSE        Type II/IV secretion system protein
     0.0016   18.2   0.0     0.0036   17.0   0.0    1.5  1  AAA_30       AAA domain
      0.008   15.5   3.3     0.0088   15.4   0.0    2.6  3  ATPase       KaiC
  ------ inclusion threshold ------
      0.017   14.4   0.9      0.031   13.5   0.9    1.3  1  DUF4704      Domain of unknown function (DUF4704)
      0.021   15.2   0.0      0.048   14.0   0.0    1.6  1  AAA_19       AAA domain
      0.056   12.9   0.0       0.16   11.4   0.0    1.7  1  PhoH         PhoH-like protein
      0.067   13.2   2.2        0.1   12.6   0.2    2.4  2  HTH_37       Helix-turn-helix domain


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.9       6.7     1e+04      77      77 ..      70      70 ..      22     113 .. 0.53
   2 ?   -3.4   0.4       7.8   1.2e+04      77      82 ..     176     189 ..     139     212 .. 0.46
   3 ?   -3.4   1.5         8   1.2e+04      77      78 ..     294     304 ..     247     344 .. 0.56
   4 !   98.2   0.0   2.1e-31   3.1e-28       1     107 [.     888    1010 ..     888    1011 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 6.7
         HA2 77 e 77
                +
  CCD24999.1 70 R 70
                1 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.8
         HA2  77 e........eeeka 82 
                 +        e++ +
  CCD24999.1 176 RelqyssesEHDVN 189
                 12222221101111 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 8
         HA2  77 e.........e 78 
                 e         +
  CCD24999.1 294 EelkeesgvdS 304
                 02333223220 PP

  == domain 4  score: 98.2 bits;  conditional E-value: 2.1e-31
         HA2    1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeee...............e...e 79  
                  A++lL++lgALd ++++T+ G+km+ +Plspr++kmLl++   e++cl+++++iv+alsv+++f++ene   +e +                +   e
  CCD24999.1  888 AIQLLQYLGALDVREKITDDGKKMSLFPLSPRFSKMLLVS--DEHDCLPYIVSIVSALSVGDPFISENELGINEVKVkptdndedentdtriDkeeE 982 
                  899*************************************..667************************9988877688888887777665515568 PP

         HA2   80 ekakkkrkeeekarrklahkdaegDhlt 107 
                  e++k  r+++ k+r+k+ + d+e+D++ 
  CCD24999.1  983 ERKKTIRTQFYKNRAKFNKLDKESDVFR 1010
                  88888899999999***********986 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   2.4e-17   3.6e-14       1      82 [.    1085    1189 ..    1085    1190 .. 0.83

  Alignments for each domain:
  == domain 1  score: 52.9 bits;  conditional E-value: 2.4e-17
                   HHHHHHHHHTTCEEEEEE..........TTCC............EEETT.TCEEEEE-TTSTTTTT...TSSSEEEEEE..EEESSSEEEEEEEEE CS
  OB_NTP_bind    1 lraillaGlypqiarkdp..........skkd............yktar.tktrvfihpsSvlaknekekepewvvyte..lvettklylrdltai 71  
                   l+++++aG+++++a++++          + k+             kt+  t+++v+ihpsS+l+ n  e +p+++vy++  l  ++k+++++l++i
   CCD24999.1 1085 LKQMICAGFVDHVAIRADylfpedaeitN-KSslinipyvpvltSKTPEiTDCFVYIHPSSILS-NLGELPPKFLVYHSlhLGGNAKTRMNTLCDI 1178
                   79************999999998888852.334677775555444444446*************.7999**********7777889********** PP

                   -HHHHHHHSTT CS
  OB_NTP_bind   72 dpawLllfagq 82  
                    + +L+++a++
   CCD24999.1 1179 KSTPLANVARN 1189
                   ******99976 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.5     0.025        37      12      79 ..      66     130 ..      53     137 .. 0.71
   2 ?    0.9   0.1      0.38   5.6e+02       7      39 ..     630     662 ..     624     698 .. 0.70
   3 !   41.3   0.0   1.1e-13   1.7e-10      41     111 .]     738     826 ..     716     826 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.025
                 HTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSS..EEEESGGGTSS CS
  Helicase_C  12 leeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesd..vLiatdvaerG 79 
                 + ++++   if+++ +++   + l++k+      ++ +l+ +e++ i+e+ ++ ++d  +L++++ +++G
  CCD24999.1  66 SLKKRKLQEIFTPKESKI---SRLKKKR--LDKFIDHQLKREEKKTIIEKLQDYKIDtsLLVSSKKLGEG 130
                 445555566788888877...6674444..33458999**************555554499999999998 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.38
                 HHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT CS
  Helicase_C   7 lellkleeeggkilifvntidrlek.vklllekk 39 
                 +++ +++   g ilif++ ++++++ vk l++++
  CCD24999.1 630 CKI-HRRLPPGAILIFMTGQQEINHmVKKLRREF 662
                 455.4788999**********9976767773333 PP

  == domain 3  score: 41.3 bits;  conditional E-value: 1.1e-13
                 STEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH..................HHHHHHHTTSSSTT CS
  Helicase_C  41 ikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv..................tsyiqriGRtgRag 111
                 + v++l++ lp++e+ +++e+  kg++ ++++t++ae++++ip+v++V++++  ++                   + ++qr+GR+gR g
  CCD24999.1 738 LYVLPLYSLLPTKEQMKVFEESPKGSRLCIVSTNIAETSLTIPGVRYVVDCGRSKERkynesngvqsfeigwiskAGANQRSGRAGRTG 826
                 567899************************************************6655678889999999*****************86 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.7e-10   2.5e-07       7     172 ..     419     585 ..     415     588 .. 0.70

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.7e-10
                 HHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   7 aiplilgggdvlvaaeTGsGKTlaflipvlqivyet......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 ++++i +++ v++++eTGsGKT+         +ye+        ++  ++ i  P r  a  +++++ + + + + +v   i  ++++++      +++
  CCD24999.1 419 IMEAIHHNDVVIISGETGSGKTTQVPQF----LYESgfgspdSPDNPGMIGITQPRRVAAVSMAKRVANELGNHGSKVAYQIRFDSTTKE------DTR 507
                 567777888999**********984444....5666666695455555666999*************99988877666655554444333......366 PP

                 EEEEEHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TT......SEEEEEESSBS.HH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx......xxxxxxxxxxx.xx RF
        DEAD 100 ivvgtpgrldd.llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lq......rqvivlSATlp.kd 172
                 + ++t g l++ ++  + ++l + + +++DEa++   +   d +  +l+++ +  ++++ ++       ++i++SATl  +d
  CCD24999.1 508 VKFMTDGVLLReMM--HDFRLTRYSSIIIDEAHERNVN--TDILIGMLSRCVRLRAKEHmSNpekckrLKLIIMSATLRvTD 585
                 68999999999444..4677**************9998..666666666654444443322244443355*******98665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       2.6   3.9e+03      52      91 ..      48     104 ..      23     113 .. 0.56
   2 !   20.3   0.0   3.4e-07   0.00051       4     115 ..     425     557 ..     421     580 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.6
      AAA_22  52 sskdllrellralglelka.................erlsseellealeqalrarav 91 
                 s +d   e+l+ l++e k+                 +rl++++l + + ++l++  +
  CCD24999.1  48 SITDTNAEILEPLTEEEKSlkkrklqeiftpkeskiSRLKKKRLDKFIDHQLKREEK 104
                 334444444444444444443334444444433357677777777777777776655 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 3.4e-07
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee...erpevvfvtlpsstsskdllrellralglelka.................erlsseelleal 82 
                 +  ++++ Ge+G+GKTt + ++l++             +p+ + +t p      +++++++++lg+ +++                 +  +   ll+  
  CCD24999.1 425 HNDVVIISGETGSGKTTQVPQFLYESGFG--S-PdspDNPGMIGITQPRRVAAVSMAKRVANELGNHGSKvayqirfdsttkedtrvKFMTDGVLLRE- 519
                 667899******************97432..2.1468****************************99999*******877665555533333333333. PP

      AAA_22  83 eqalrarav........ielliiDEaqhlr..s...eealeeLrsl 115
                         +         + +iiDEa+  +  +     +l+ +++l
  CCD24999.1 520 --------MmhdfrltrYSSIIIDEAHERNvnTdilIGMLSRCVRL 557
                 ........33333344447********8654324555555555444 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   8.2e-07    0.0012      40     146 ..     331     443 ..     302     450 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 8.2e-07
       T2SSE  40 eelekaalerlisriaalakldiseerplqdarlp..ekgvrlr.vvllPvvagealviRkksakeltlddlgaeealk...ekiaevlrkavrergli 132
                 +++ k+  +   ++i+ + ++d++   p ++   +   ++++l+ ++ +P +   + ++Rk     ++ +d ++e++++      ++++ +a++++ ++
  CCD24999.1 331 HDIAKDFKNWANQEIKKMEGRDVEPITPQMNIDYKpiIREEDLEdGLEVPNIPVDEKSVRKAFYVPVERSDTIQEARMQlpvFGEEHAIMEAIHHNDVV 429
                 555555556666666666666666655555555445556666643566788888778888888888877776666666644434578999999999*** PP

       T2SSE 133 lvsGgTgsGKttll 146
                 ++sG TgsGKtt +
  CCD24999.1 430 IISGETGSGKTTQV 443
                 ************76 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.4e-06    0.0036       8      97 ..     417     537 ..     414     552 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 2.4e-06
      AAA_30   8 aavealltsgdrvavltGpAGtGKttalkalreaweaa.g................grviglAptgkaAkvLa.................eelgieast 72 
                 +a+ ++++++d v+++ G  G+GKtt + +   ++e+  g                +rv++++  +++A++L+                 e++ ++ +t
  CCD24999.1 417 HAIMEAIHHND-VVIISGETGSGKTTQVPQF--LYESGfGspdspdnpgmigitqpRRVAAVSMAKRVANELGnhgskvayqirfdsttkEDTRVKFMT 512
                 56667777777.**************77654..55555558899*****************************66666666666555555566677777 PP

      AAA_30  73 iakllkrlkgrarlepgtllivDEa 97 
                    ll+++ +  rl++ + +i+DEa
  CCD24999.1 513 DGVLLREMMHDFRLTRYSSIIIDEA 537
                 777776666889************9 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       4.5   6.8e+03     138     169 ..      98     130 ..      84     137 .. 0.71
   2 !   15.4   0.0   5.9e-06    0.0088      14      43 ..     421     450 ..     412     456 .. 0.88
   3 ?   -1.5   0.2      0.84   1.3e+03     125     217 ..     498     593 ..     476     604 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.5
      ATPase 138 avaReilrqlvrvlkklgv.Tailvseksssee 169
                 ++ Re+ +++++ l+++++ T++lvs k+ +e+
  CCD24999.1  98 QLKREEKKTIIEKLQDYKIdTSLLVSSKKLGEG 130
                 455777777778887776658888888776554 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 5.9e-06
      ATPase  14 gGipegrvvlitGepGtGKtifalqFlikg 43 
                 + i ++ vv i+Ge+G+GKt+ + qFl+++
  CCD24999.1 421 EAIHHNDVVIISGETGSGKTTQVPQFLYES 450
                 568899**********************97 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.84
      ATPase 125 iDsitglayeekeavaReilrqlvrvlkklgvTailvsekssseeaaggygveefivdgvivLdlkeiee......elvRtleivkmRgtkhskkehpf 217
                  Ds t  +++ k ++    lr++++ ++ ++  +i++ e+  +e+++++  +   +++  ++L+ ke ++      +l+ ++    +R t+ s ++  f
  CCD24999.1 498 FDSTTKEDTRVKFMTDGVLLREMMHDFRLTRYSSIIIDEA--HERNVNTDILIG-MLSRCVRLRAKEHMSnpekckRLKLIIMSATLRVTDFSENTTLF 593
                 5666666666677777778899999999999999999994..444444444444.66667788888888877766444444444566777777666655 PP

>> DUF4704  Domain of unknown function (DUF4704)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.9   2.1e-05     0.031     156     232 ..     988    1062 ..     986    1074 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.1e-05
     DUF4704  156 LatefledesilknvrrvstvlrlldtlkyyYwvvnprsrsgiesksldgerpsqeeilklRallLllikqlvlkgs 232 
                  + t+f ++   ++++ + s v+rll +++ + ++++ +++  ++   l+      eei+klR+ l+ +ik  ++k++
  CCD24999.1  988 IRTQFYKNRAKFNKLDKESDVFRLLSVVSAFDYIPKNQKATFVQNNFLRS--KTLEEIVKLRMQLMYIIKSNTSKEN 1062
                  56899999999**********************9**99999999999887..899***************9999433 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.2e-05     0.048       6     116 ..     421     542 ..     415     557 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.2e-05
      AAA_19   6 e.alkekvllvtaGpGtGKTrvlkhivallvelggvkp...........eeillvaftgrAakelrerlaalgae....atTiHrlalldfddllteal 88 
                 e  ++++v+++ +  G+GKT+ + + + +       +p           +++++v++++r a+el +  +++  +      T           ++++ +
  CCD24999.1 421 EaIHHNDVVIISGETGSGKTTQVPQFLYESGFGSPDSPdnpgmigitqpRRVAAVSMAKRVANELGNHGSKVAYQirfdS-TT----------KEDTRV 508
                 445889999************99988877776666666777666666666666666666666666665533333333322.22..........222222 PP

      AAA_19  89 elle......eaeeekklqeeellivDEfqdvde 116
                 +++       e  ++  l++   +i+DE+ + + 
  CCD24999.1 509 KFMTdgvllrEMMHDFRLTRYSSIIIDEAHERNV 542
                 3333333333666677785555******987654 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.16      10      33 ..     417     440 ..     413     443 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                 HHHHHHHHH-SEEEEE--TTSSTT CS
        PhoH  10 keylealkkndivfaiGpaGtGKt 33 
                 ++++ea+++nd+v++ G++G+GKt
  CCD24999.1 417 HAIMEAIHHNDVVIISGETGSGKT 440
                 6789*******************9 PP

>> HTH_37  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   6.9e-05       0.1      28      64 ..      63      99 ..      40     101 .. 0.91
   2 ?   -3.1   0.1       5.3   7.9e+03      11      29 ..    1042    1060 ..    1041    1064 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.9e-05
                HHCT--HHHHHHHHT--HHHHHHHHTT--TT--HHHH CS
      HTH_37 28 ekrelsqseaaqllgiaqPkvsrllrgklsrfsldkL 64
                e++ l+++++++++  +++k+srl++ +l++f  ++L
  CCD24999.1 63 EEKSLKKRKLQEIFTPKESKISRLKKKRLDKFIDHQL 99
                7899***************************977776 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.3
                  HHHHHHHHHHHHHHHHHHH CS
      HTH_37   11 eelkaKaqlalaiaeliek 29  
                  e +k++ ql++ i+    k
  CCD24999.1 1042 EIVKLRMQLMYIIKSNTSK 1060
                  77899*****999876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1765  (0.0984439); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.12u 0.28s 00:00:01.40 Elapsed: 00:00:00.46
# Mc/sec: 8275.29
//
Query:       CCD25000.1  [L=1150]
Description: hypothetical protein NDAI_0E01840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-67  225.9   0.0    9.1e-67  225.2   0.0    1.3  1  SNF2_N         SNF2 family N-terminal domain
    5.1e-15   55.2   0.0      1e-14   54.2   0.0    1.5  1  HIRAN          HIRAN domain
    2.5e-13   50.3   0.0    1.2e-12   48.2   0.0    2.1  2  Helicase_C     Helicase conserved C-terminal domain
    1.3e-08   35.1   7.1    2.3e-08   34.2   7.1    1.5  1  zf-RING_2      Ring finger domain
    1.3e-07   31.4   4.1    2.2e-07   30.6   4.1    1.4  1  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
    1.2e-06   28.4   8.5    2.2e-06   27.5   8.5    1.5  1  zf-RING_5      zinc-RING finger domain
    8.1e-06   25.6   8.7    1.8e-05   24.5   8.7    1.6  1  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
      2e-05   24.7   0.0    0.00022   21.3   0.0    2.9  2  ResIII         Type III restriction enzyme, res subunit
    2.6e-05   24.2   5.7    5.5e-05   23.1   5.7    1.6  1  zf-RING_UBOX   RING-type zinc-finger
     0.0008   19.2   5.6     0.0015   18.3   5.6    1.5  1  Prok-RING_4    Prokaryotic RING finger family 4
     0.0064   16.3   7.1      0.013   15.3   7.1    1.6  1  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.019   15.1   8.8      0.041   14.0   8.8    1.6  1  zf-C3HC4_4     zinc finger of C3HC4-type, RING
      0.043   14.0   0.4       0.15   12.3   0.4    2.0  1  KLRAQ          Predicted coiled-coil domain-containing protei
      0.045   13.6   2.8       0.11   12.4   2.8    1.6  1  zf-RING_6      zf-RING of BARD1-type protein
        0.1   12.8   4.6       0.26   11.5   4.6    1.7  1  FANCL_C        FANCL C-terminal domain
       0.11   12.2   5.6       0.25   11.1   5.6    1.6  1  zf-RING_11     RING-like zinc finger
       0.22   11.8   4.1       0.52   10.6   4.1    1.6  1  zf-rbx1        RING-H2 zinc finger domain
       0.29   11.0   6.8       0.61    9.9   6.8    1.6  1  zf-RING_4      RING/Ubox like zinc-binding domain
        1.9    8.3   4.7        2.4    7.9   0.4    3.2  3  Scm3           Centromere protein Scm3
          5    7.1   6.3         10    6.1   6.3    1.6  1  PHD            PHD-finger


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.2   0.0     1e-69   9.1e-67       1     347 [.     428     828 ..     428     831 .. 0.88

  Alignments for each domain:
  == domain 1  score: 225.2 bits;  conditional E-value: 1e-69
                 HHHHHHHHH.........................................................................HHHHHTT--EEE---TT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N   1 yQkeavkwmlkReqnlqdleaalrkllk..................................tldgekiyvnpatgevveesaeakqsvrGGiLaDemG 65 
                 yQk+++ wml+Re++     +a+ +++                                          y n +tge + +++ +k  ++GG+L+DemG
  CCD25000.1 428 YQKQGLTWMLRREREFA---KAASDGKDpeidgnlmnplwkqfkwpkdmswaaqklsgssilVDSDIFFYANLHTGEFSVNKPVLKTMMKGGLLSDEMG 523
                 9************9877...77888888899****************************998444455799**************************** PP

                 S--HHHHHHHHH..........HHTTTS---.....................S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH--------- CS
                 xxxxxxxxxxxxxxx.......xxxxxxxxx..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  66 LGKTvqvlalilaqr.......akeekdkek..............krkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkva 143
                 LGKTv +l+lil++        +       +              ++k  ++  tLivvP+sll+qW +e+ +  +s+ +r  +y g++  +++ +k++
  CCD25000.1 524 LGKTVSTLSLILTCPhdsdvvdK-------TlfkednddeiigksVKKPYASRTTLIVVPMSLLNQWSSEFTKANNSPDMRSEIYYGGN--VSSLKKLL 613
                 ************99955555550.......445555555668887888899999**************************998888886..66667999 PP

                 --------EEEE-HHHHHHHT..................TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 144 pklladydvvittYdvlsreaelq............kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfL 230
                  ++ +   vvittY +++  +e+             +  + l +v+  rvv+DEght++n t+ +++a+ +L ++ rwiltGTPi n l dly+++kfL
  CCD25000.1 614 TATGNPPTVVITTYGIVQ--SEWLklsktkmnsgdiQASTGLFSVDFYRVVIDEGHTIRNRTTATSKAIMELTSKCRWILTGTPIINRLDDLYSMVKFL 710
                 99***************9..5566689********9999************************************************************ PP

                 -TTTT--HHHHHHHTHHHHH.HHHHHHHHHHHTT-STTEE---GGGT......--S---EEEEEEEEE--HHHHHHHH....................H CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 231 reepfgekqtfdkllqrpie.aqaekgrsrLlqllqrlmlrrakkdv......eknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaa 322
                 + ep+++   ++  +++p+e ++ ++     + +l++++lrr+k+          +lPpk+  + ++kl+k +  +Y+ +l   ++  +++ l r +  
  CCD25000.1 711 QLEPWSQISYWKMFVSTPFEnKNFRQAFDVVNAILEPVLLRRTKQMKdidgkpLVELPPKEIVVERIKLNKTQNAVYK-YLLNRAESSVQSGLARGDLL 808
                 ********************6666778888999***********754336543348**********************.66666667777777777777 PP

                 HHHHH-HHH-HHHHHHHHHHHHH-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 323 lkssskskekilelllelrqacnhp 347
                  k s+     il  +l+lrq+c+  
  CCD25000.1 809 KKYST-----ILVHILRLRQVCCDV 828
                 77666.....************975 PP

>> HIRAN  HIRAN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   1.1e-17     1e-14       1      95 [.     171     278 ..     171     279 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.2 bits;  conditional E-value: 1.1e-17
                 EEEEEEEEECGGGCCT..---TTEEEEEEE-T..............T-SS-TT-EEEEE.TTS-EEEEE-HHHHHHHHHHHHTTSSEEEEEESS-TTTE CS
       HIRAN   1 lgsfevsvvglsyysgtgylkpgtevilerep..............nnpadanavrvln.ergfeiGrlprevakwlspLldsgfitfegvvvdapekn 84 
                 +g+++v+ ++++  ++++ lk+g+e+ +++                 + + +n vrv + +  +eiGr+p+++a++++pL+ ++ i+fe++++++++k+
  CCD25000.1 171 VGALQVTCMATR--PTVRPLKYGSELSFTKSVsnlspsklydsygrRKTKMSNYVRVFDsQLNREIGRVPEDIAQIVYPLIGKNEISFEATLIFCDNKR 267
                 5899********..*****************9***************************88899*********************************** PP

                 EEEEEEEEEEG CS
       HIRAN  85 lkvgltvylsl 95 
                 l++g+t++++l
  CCD25000.1 268 LSIGDTFVVQL 278
                 *********98 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         4   3.6e+03       5      29 ..     244     270 ..     240     317 .. 0.65
   2 !   48.2   0.0   1.3e-15   1.2e-12       7     111 .]     984    1096 ..     975    1096 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4
                 HHHHHH.HHTTTTSEEEEEESSHH.HH CS
  Helicase_C   5 allell.kleeeggkilifvntid.rl 29 
                 +++ l+ k+e + + +lif+ +++ ++
  CCD25000.1 244 IVYPLIgKNEISFEATLIFCDNKRlSI 270
                 5566667888888999****9998633 PP

  == domain 2  score: 48.2 bits;  conditional E-value: 1.3e-15
                  HHHHHHTTTTSEEEEEESSHHHHHH.HHHHHHHT...TSTEEEESTTSTHHHHHHHHHHHH....TTSSSEEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C    7 lellkleeeggkilifvntidrlek.vklllekk...gikvavlhgelpqnereeileqfn....kgesdvLiatdvaerGidipkvnlVinfdlpr 95  
                  l+ll+ ++ g+++++f+++ + l+   + l+e     + kv +++g+l+ +er  +l++f+    + +  +L++ ++++ G+++++++   ++d+++
  CCD25000.1  984 LKLLQDTSAGEQVVVFSQFSSYLDIlERELTEALpadSSKVYKFDGRLSLKERSVVLQDFQvkdlSRQKILLLSLKAGGVGLNLTCASQAYMMDPWW 1080
                  3455999**************99766444433336669**********************987644455599************************* PP

                  SHHHHHHHHTTSSSTT CS
  Helicase_C   96 nvtsyiqriGRtgRag 111 
                  +++   q+i+R++R+g
  CCD25000.1 1081 SPSMEDQAIDRIHRIG 1096
                  **************97 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   7.1   2.6e-11   2.3e-08       2      44 .]     896     944 ..     895     944 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 2.6e-11
   zf-RING_2   2 eCpIC.leelssadsvlllpCgHvfhreClerwlrssst......CPlCr 44 
                 eC+IC +e+++ ++ v ++ CgH f+++Cl+++++ +s+      CP+Cr
  CCD25000.1 896 ECSICtTEPINVENVVFTE-CGHPFCENCLDEYFAFQSQkkldfnCPNCR 944
                 8****66888876666666.*************88888888********9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   4.1   2.5e-10   2.2e-07       3      48 ..     895     948 ..     893     950 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 2.5e-10
                 SB-TTTSSSBS-...EEETTEEEEEE-HHHHHHHHH......TT-B-TTT--B-- CS
  zf-C3HC4_3   3 eeCviClerprn...vvllpCgHlvlCeeCaekllk......rkkkCpiCrrpie 48 
                  eC+iC ++p n   vv+ +CgH  +Ce+C++++ +       + +Cp Cr+ i+
  CCD25000.1 895 LECSICTTEPINvenVVFTECGHP-FCENCLDEYFAfqsqkkLDFNCPNCREGIS 948
                 69******75543339********.*********999887666779*****9885 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   8.5   2.4e-09   2.2e-06       1      43 [.     896     944 ..     896     945 .. 0.97

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.4e-09
   zf-RING_5   1 hCnkCfeklskeekfyltsCgHifCekClkkll......ekeavCpiCr 43 
                 +C++C ++  + e++++t+CgH fCe+Cl++++      + +++Cp Cr
  CCD25000.1 896 ECSICTTEPINVENVVFTECGHPFCENCLDEYFafqsqkKLDFNCPNCR 944
                 6*************************************999*******9 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   8.7     2e-08   1.8e-05       1      41 []     897     943 ..     897     943 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2e-08
                 -TTT-S--SS-E...E-TTS--B-CHHHHHHHHC....TSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCirkilks....rkkvkCPlC 41 
                 C+iC++e+ +     ++eC+H fC++C++++  +    +  ++CP+C
  CCD25000.1 897 CSICTTEPINVEnvVFTECGHPFCENCLDEYFAFqsqkKLDFNCPNC 943
                 *******99877779*****************99765444455**** PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.8   2.5e+03     101     122 ..      30      53 ..       4     135 .. 0.58
   2 !   21.3   0.0   2.5e-07   0.00022      24     170 ..     513     696 ..     422     697 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.8
                 ...-SEEEEEHHHHHHTH...... CS
      ResIII 101 stnkkilvttiqsldadseee..e 122
                  +n++ ++++++s++++++++  +
  CCD25000.1  30 LQNSESFLFSENSISKQEDNDqsN 53 
                 444455555555555554333221 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 2.5e-07
                 TSEEEEEESTTSTHHHHHHHHHHHH-S.............................-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B CS
      ResIII  24 dkrglikmaTGtGKTlvaaklierllkkgkee........................kflflvprkslleqtleefkkflseayke....igkkvsgdkk 94 
                  k gl+  + G GKT+  ++li  + +  +                          ++ ++v   sll+q+ +ef+k  ++++++     g++vs+ kk
  CCD25000.1 513 MKGGLLSDEMGLGKTVSTLSLILTCPHDSDVVdktlfkednddeiigksvkkpyasRTTLIVVPMSLLNQWSSEFTKANNSPDMRseiyYGGNVSSLKK 611
                 567888888999999999999999988766668899999999999999999999996666666679***********9999988656664444554444 PP

                 --.......-SEEEEEHHHHHHTH..............HHHTTT-S....EEEEETGGGTTS.T..TTHHHHHT---SEEEEEESS-S CS
      ResIII  95 kakekdstnkkilvttiqsldadseee......eeeseellrdrfd....viiiDEaHrlgakk..swreilekfkeavllglTATpe 170
                        +   +++tt+  ++++   +      ++ + +++ + f      ++iDE H ++  +  + ++i+e  +++ ++ lT+Tp 
  CCD25000.1 612 LL-TATGNPPTVVITTYGIVQSEW-LKlsktkmNSGDIQASTGLFSvdfyRVVIDEGHTIRNRTtaTSKAIMELTSKCRWI-LTGTPI 696
                 44.333444455555555555544.4445555544444444444446666899*******998443777788888877776.6***96 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   5.7   6.1e-08   5.5e-05       1      39 []     897     941 ..     897     941 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 6.1e-08
  zf-RING_UBOX   1 CpICl.elftdP.lv.lpCGHtFCreCl.w..elskslegafkCP 39 
                   C+IC  e+ +   +v ++CGH FC++Cl +   ++++++  f CP
    CCD25000.1 897 CSICTtEPINVEnVVfTECGHPFCENCLdEyfAFQSQKKLDFNCP 941
                   *****999995565768***********74689999999999999 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   5.6   1.7e-06    0.0015       1      43 [.     897     950 ..     897     953 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.7e-06
  Prok-RING_4   1 CvlCgeq...ekkailepCgHlvCkeCfdsk...dls.....sCPlCqrrisks 43 
                  C +C+++    +++++  CgH +C++C+d+    +++      CP C++ is+s
   CCD25000.1 897 CSICTTEpinVENVVFTECGHPFCENCLDEYfafQSQkkldfNCPNCREGISPS 950
                  99****966667899**************98766444678899*****998865 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   7.1   1.5e-05     0.013       1      40 []     896     943 ..     896     943 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.5e-05
  zf-C3HC4_2   1 kCpiCldm...lkdpsvvtpCgHvfCqkCilr..sLeekn....eCPlC 40 
                 +C iC  +    ++ +v t+CgH fC++C+++  + ++++    +CP C
  CCD25000.1 896 ECSICTTEpinVEN-VVFTECGHPFCENCLDEyfAFQSQKkldfNCPNC 943
                 69999986332455.6888***********9944333333133568888 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   8.8   4.6e-05     0.041      10      42 .]     909     943 ..     897     943 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.6e-05
  zf-C3HC4_4  10 kPvsleCGhsfClsCisslqkepdgeq..llCplC 42 
                 + v  eCGh fC +C++++   +++++  + Cp C
  CCD25000.1 909 NVVFTECGHPFCENCLDEYFAFQSQKKldFNCPNC 943
                 556679************97655444444****** PP

>> KLRAQ  Predicted coiled-coil domain-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   0.00017      0.15      28      76 ..     844     892 ..     838     914 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
       KLRAQ  28 easlkeelkekeqslrkseqEvdsLtFrNkqLekrvellqeeleveekk 76 
                  +++ ++ ke +  + ++++E++s +F  + L+k ++ +q++ e++ek 
  CCD25000.1 844 GNKIVNDSKELDDLIAQTNKENQSGGFTEEELAKAIADIQQKYENSEKF 892
                 56777788999999******************************99964 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.8   0.00012      0.11       8      40 ..     895     929 ..     889     943 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
   zf-RING_6   8 lrcsrctd..ilrepvclggcehifcsncisdcfg 40 
                 l cs ct   i  e v +  c h fc nc+ + f 
  CCD25000.1 895 LECSICTTepINVENVVFTECGHPFCENCLDEYFA 929
                 89****9555999*****************99875 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   4.6   0.00029      0.26       2      66 ..     894     948 ..     893     951 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00029
                 --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE CS
     FANCL_C   2 eveCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrslkesrqsfdvlfGeCPyCkkkis 66 
                 ++eC+iC ++ ++ ++v       ++C+++f ++CL e+++ +++ +  f     +CP+C++ is
  CCD25000.1 894 SLECSICTTEPINVENVVF-----TECGHPFCENCLDEYFAFQSQKKLDF-----NCPNCREGIS 948
                 5799999999995444444.....468888889********999998888.....59***99887 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   5.6   0.00028      0.25       1      28 [.     896     923 ..     896     924 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHtFHfkC 28 
                 eCsIC  e  + +++++++C+H F  +C
  CCD25000.1 896 ECSICTTEPINVENVVFTECGHPFCENC 923
                 9*********************998888 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.1   0.00058      0.52      13      55 .]     896     944 ..     889     944 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00058
     zf-rbx1  13 acieckapgdeecpvvlGeCgHaFHlhCiskWlkt......rkvCPlcr 55 
                 +c  c+++  +  +vv+ eCgH F  +C+++++          +CP cr
  CCD25000.1 896 ECSICTTEPINVENVVFTECGHPFCENCLDEYFAFqsqkklDFNCPNCR 944
                 57778887777678999**************998766665556799997 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   6.8   0.00068      0.61       1      45 [.     897     945 ..     897     947 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00068
   zf-RING_4   1 cplCdeeldetdkdlkpCeCgyqiClfCyhrile.....eeegrCPaCre 45 
                 c +C++e   + +++   eCg+ +C  C+++  +     + ++ CP+Cre
  CCD25000.1 897 CSICTTEP-INVENVVFTECGHPFCENCLDEYFAfqsqkKLDFNCPNCRE 945
                 55665554.3335566779**********9988876655569*******7 PP

>> Scm3  Centromere protein Scm3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.4    0.0027       2.4      18      39 ..     345     365 ..     344     369 .. 0.90
   2 ?   -2.4   0.0       4.5     4e+03      41      48 ..     660     667 ..     654     670 .. 0.84
   3 ?   -0.4   0.1       1.1   9.7e+02       9      25 ..     872     888 ..     870     891 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0027
                 HHHHHHHSG..GGSS--B-TTT CS
        Scm3  18 sifeKYeridfedqgDEIDlat 39 
                  i+eK ++   +dqg++IDl++
  CCD25000.1 345 AILEKLNS-GIDDQGEVIDLED 365
                 699*****.99*********76 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.5
                 SB-XXXXX CS
        Scm3  41 eivvDnGh 48 
                 ++v+D+Gh
  CCD25000.1 660 RVVIDEGH 667
                 59*****9 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHHHS CS
        Scm3   9 derlkkrwesifeKYer 25 
                 +e l k+ ++i +KYe+
  CCD25000.1 872 EEELAKAIADIQQKYEN 888
                 6889999*********9 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.3     0.011        10       2      51 ..     897     945 ..     896     946 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.011
                 BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 C++C   +  + e v+  +C++ f  +Cl+     +++++ ++ C++C+e
  CCD25000.1 897 CSICTT-EPINVENVVFTECGHPFCENCLDEYFAFQSQKKLDFNCPNCRE 945
                 ******.666777777799*************999999988*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.79u 0.26s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 7887.84
//
Query:       CCD25001.1  [L=861]
Description: hypothetical protein NDAI_0E01850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-54  185.2   0.7    2.4e-54  184.0   0.7    1.7  1  MIF4G_like    MIF4G like
    1.9e-45  155.5   1.1    2.3e-40  138.8   0.2    2.5  2  MIF4G_like_2  MIF4G like
  ------ inclusion threshold ------
        4.8    7.7   7.8       0.56   10.7   0.6    3.2  4  DUF1493       Protein of unknown function (DUF1493)


Domain annotation for each model (and alignments):
>> MIF4G_like  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.0   0.7   4.1e-58   2.4e-54       3     190 ..     346     540 ..     344     541 .. 0.91

  Alignments for each domain:
  == domain 1  score: 184.0 bits;  conditional E-value: 4.1e-58
  MIF4G_like   3 asslaavllrdilvdvinllevnrkeaakllldldlyltkktfalratsvdkl...kdldppestwkledvvveavlsellqlptpekklvyyhsllte 98 
                 ++++a+ ll di++dv++ +e nrke+ak++l+ld++++k  f++ +  ++kl    +  p++st+k+ed+v+e++ls +++lp++++ lvyy sll+e
  CCD25001.1 346 ITTYAGQLLNDIIIDVVESIEYNRKEVAKQVLTLDIFFKKGIFTAPGEDMNKLkeaYEEVPSTSTFKIEDLVIETILSLVFKLPDTPQPLVYYYSLLVE 444
                 57899************************************************4433456899************************************ PP

  MIF4G_like  99 icklaPkavaPslGrairllyaalssldvelierfldWfshhlsnfgftWkWkeWvedv...elpalhPrkvfikrviekeirlsyadrike.tlP 190
                 ic+++P a+aP++Gra r +y++++ ld el  r+ldWf+  +snf+f+WkW+eW ++    e    +P+  f+k++i+k ir +  + i e  lP
  CCD25001.1 445 ICQISPIAIAPVFGRAFRYFYNNIEGLDAELQLRYLDWFTLQISNFNFDWKWNEWTDYFykyEKSFYNPKVNFVKNLIKKAIRSTSNTTIVEaKLP 540
                 *********************************************************86322455679**************98666655441566 PP

>> MIF4G_like_2  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.8   0.2   3.8e-44   2.3e-40       2     160 ..     581     746 ..     580     755 .. 0.95
   2 !   15.1   0.1   2.1e-06     0.012     214     266 ..     758     825 ..     752     826 .. 0.95

  Alignments for each domain:
  == domain 1  score: 138.8 bits;  conditional E-value: 3.8e-44
  MIF4G_like_2   2 kyedeslPfaaeaqelldlirkkapaeevlelldeikesaeeegsieadpdslsidvfvqtllhvGskSlSHvlsaierykevLkel.....aesee 93 
                   ++ +e+ Pf+ +++ +l++++k +++++++el  +++e ++ ++s++ + d++++ +++q++ ++G++SlSH++++i++++++L+ +      ++ +
    CCD25001.1 581 YFLQENVPFETQVRDILKYMHKPNNQRDMDELQGILDEIRTRYQSMIREMDEFIVVLLTQCVTYSGNRSLSHSNKYINDLQQDLHIAlsdlnLSTCT 677
                   7889*********************************************************************************9976666666** PP

  MIF4G_like_2  94 araqileavmrfWknnpqmaiiivdkLlnyqivepasVvewifs..keknegltrayvwEllkrtlskv 160
                   +++ ++e+++rfW+nn+q+++++vd++ + ++v++++V++++++  + k +glt+ +++E+++rtl++ 
    CCD25001.1 678 KEFIMIESILRFWNNNSQTGFLVVDAFRYSGLVSSKAVIDFVLKsyNGKIYGLTDDTAIECIFRTLTRG 746
                   ********************************************99889*****************874 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.1e-06
  MIF4G_like_2 214 livferlveilsesleeletsgseentevie...............ewkkwwikrllkvflrkyavee 266
                   ++vf++l ++l e++ee e+ g  ++++ ++               +wk++ ++ l+k+++r+ya ++
    CCD25001.1 758 QYVFQKLYSVLFETVEEYEKRGYISIEVLPTfdsslyvdsfekwniKWKYNQTMLLMKSIIRRYASNL 825
                   689*******************999999999*********************************9875 PP

>> DUF1493  Protein of unknown function (DUF1493)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       1.2   7.2e+03      21      54 ..     370     404 ..     354     416 .. 0.65
   2 ?   -1.3   0.1       0.5     3e+03      55      94 ..     489     533 ..     471     538 .. 0.61
   3 ?   10.7   0.6   9.4e-05      0.56      41      84 ..     553     598 ..     526     610 .. 0.84
   4 ?   -3.6   0.0       2.5   1.5e+04       6      22 ..     713     729 ..     712     738 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
     DUF1493  21 fkgkeveltldtdlded.lkldeddaedllekffk 54 
                  ++ ++ ltld   ++  + ++++d++ l e++++
  CCD25001.1 370 KEVAKQVLTLDIFFKKGiFTAPGEDMNKLKEAYEE 404
                 34677778888777664378888888888877765 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.5
     DUF1493  55 rfnVdrgnfkiktYfvp.....dtpllvileylkkkeverekplT 94 
                 +fn d +  ++++Yf        +p +  ++ l kk++  + + T
  CCD25001.1 489 NFNFDWKWNEWTDYFYKyeksfYNPKVNFVKNLIKKAIRSTSNTT 533
                 455555555666777554434334444555666666666665555 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 9.4e-05
     DUF1493  41 deddaedllekffkrfnVdrgnfkikt.Yfvp.dtpllvileylkk 84 
                  e+++++  + ff +f+V+ +++k ++ Yf   ++p+ + +  + k
  CCD25001.1 553 SEKELHEYYQSFFSHFKVAISDIKANDlYFLQeNVPFETQVRDILK 598
                 6899********************9875776678999887766554 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 2.5
     DUF1493   6 kevlelireelgtklfk 22 
                 k v++++ ++++ k++ 
  CCD25001.1 713 KAVIDFVLKSYNGKIYG 729
                 67999999999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       640  (0.0356964); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5846.31
//
Query:       CCD25002.1  [L=204]
Description: hypothetical protein NDAI_0E01860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-89  296.2  12.7    1.1e-88  296.0  12.7    1.0  1  Ribosomal_L15e  Ribosomal L15


Domain annotation for each model (and alignments):
>> Ribosomal_L15e  Ribosomal L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.0  12.7   6.2e-93   1.1e-88       1     186 [.       2     186 ..       2     190 .. 0.98

  Alignments for each domain:
  == domain 1  score: 296.0 bits;  conditional E-value: 6.2e-93
                     -SHHHHHHHTTSTTSHHHHHHHHHHHHHHTTS-SEEEESS-SSHHHHHHHT--SSTTEEEEEEEEE-SS---..---SS---GGGG-SSS---SS CS
  Ribosomal_L15e   1 gaykylrelwkkkqsdvlrellrerlweyrqepavvrverptrldrArrLGYkakqGivvvrvrvrrGgrkkkvskgktgrkpkrqgvnklkpak 95 
                     gaykyl+el++kkqsdvlr+l+r+r+weyrq+++++r++rp+r+d+ArrLGYkakqG+v++rvrvrrG+rk++v+kg+t++kp++qgvn+lk ++
      CCD25002.1   2 GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRASRPSRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQR 96 
                     79********************************************************************************************* PP

                     -HHHHHHHHHHHHSTTSEEEEEEEEEEESSEEEEEEEEE-TTSHHHHT-TTTGGGGSGGGTTGGGGT-SHHHHHHTT-S-SS.TT-TTTSS CS
  Ribosomal_L15e  96 slqaiaeervgrklpnlrvLnSYwvgeDgtykyyEvilvDpshkairndkkinwickkvhkhRelrGltsagkksRGlrkkglkgaekirg 186
                      l+a+aeervgr+  nlrvLnSYwv++D+tyky+Evil+Dpshkair+d+++nwic++vhkhRe rGlt++gkksRG+ +kg+++++++ g
      CCD25002.1  97 ALRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILIDPSHKAIRRDARYNWICNPVHKHRENRGLTATGKKSRGI-NKGHRYNNTKSG 186
                     ******************************************************************************.9*****998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       568  (0.0316805); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1689.20
//
Query:       CCD25003.1  [L=664]
Description: hypothetical protein NDAI_0E01870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-07   28.8  12.7    1.4e-06   28.0  12.7    1.4  1  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
        2.3    8.5  12.9        1.5    9.1   3.8    2.8  2  DUF5426      Family of unknown function (DUF5426)
          3    7.8  12.0        5.9    6.8  12.0    1.5  1  Prok-RING_4  Prokaryotic RING finger family 4


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0  12.7   2.4e-10   1.4e-06       2      48 ..     609     656 ..     608     658 .. 0.94

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.4e-10
                 GSB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B-- CS
  zf-C3HC4_3   2 deeCviClerprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrpie 48 
                 d +Cv+C++ +r +vl+pC++l +C eC   + +  ++kC +C +p++
  CCD25003.1 609 DLTCVLCKRHRRRIVLWPCNCLTICDECRLAIGRrGTTKCICCAEPVK 656
                 578*****************************9999*********997 PP

>> DUF5426  Family of unknown function (DUF5426)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.8   0.00025       1.5      22      63 ..     238     276 ..     228     296 .. 0.77
   2 ?    2.5   3.4     0.027   1.6e+02      19      70 ..     293     344 ..     280     355 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00025
     DUF5426  22 llvklslkLvkllkaRvkhslfnytallllvklfqkienafq 63 
                 l+ +l+++Lv+ l++R k+s+f+ t +l+++  f k    f+
  CCD25003.1 238 LVNRLIIHLVEVLNMRKKYSIFSTTVYLVYLPFFLKN---FN 276
                 55689*******************9999998887653...33 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.027
     DUF5426  19 LiellvklslkLvkllkaRvkhslfnytallllvklfqkienafqklanivf 70 
                 ++  +++++++ ++ +  + k s+f y+ ++ l++l  + +++  ++    f
  CCD25003.1 293 VVMIFTSFIFHSFRYITNKDKNSIFKYMHMFKLLNLTGEENIELTLFKFATF 344
                 456788999************************9998776666655555555 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  12.0   0.00099       5.9       1      25 [.     612     637 ..     612     657 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00099
  Prok-RING_4   1 CvlCgeqekkailepCgHl.vCkeCf 25 
                  CvlC+++++ ++l pC+ l +C+eC 
   CCD25003.1 612 CVLCKRHRRRIVLWPCNCLtICDECR 637
                  *************************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 5025.43
//
Query:       CCD25004.1  [L=592]
Description: hypothetical protein NDAI_0E01880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.2e-92  307.8   0.0    1.3e-91  307.2   0.0    1.3  1  AICARFT_IMPCHas  AICARFT/IMPCHase bienzyme
      3e-24   85.0   0.0    6.6e-24   83.9   0.0    1.6  1  MGS              MGS-like domain


Domain annotation for each model (and alignments):
>> AICARFT_IMPCHas  AICARFT/IMPCHase bienzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.2   0.0   1.4e-95   1.3e-91       1     296 []     136     460 ..     136     460 .. 0.91

  Alignments for each domain:
  == domain 1  score: 307.2 bits;  conditional E-value: 1.4e-95
                      HHHTTTT-EEE-SGGGHHHHHHHHHC.T.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE...EEEEEEEEESSSSSTTS-E.EEEE-TTS CS
  AICARFT_IMPCHas   1 AAKNhksVtvvvdpadYeevleelkk.gevsletrkklaakaFahtaaYDaaiaeylskqlpetlklslekkqkLrYGeNphQka.alyeeeee 92 
                      AAKNh++Vt+++dp+dY+ +l+el++ ge+s+e+r++la+kaF++ta+YDa+i+++++kq++e      + +  LrYG+NphQk+ ++y ++  
       CCD25004.1 136 AAKNHTRVTILSDPNDYSVFLSELNSnGEISQELRNRLALKAFERTADYDATISDFFRKQYSE-----NKAQLPLRYGANPHQKPaQAYITQ-- 222
                      9*************************99*****************************999975.....56678***********97788543.. PP

                      TTHHH-EEEESS---HHHHHHHHHHHHHHCTS....E..EEEEEETTEEEEEEE...................ESSHHHHHHHHHCCSHHHHTT CS
  AICARFT_IMPCHas  93 eglakaeqlqGkelsynNllDadaalelvkef....a..avaivKHanpcGvAv...................getlaeAyekAlaaDpvSaFG 161
                      e+   ++ l G +++y+NllDa +++ lvke+    +  a+a++KH++p+G+Av                    + la Ay++A+ aD++S+FG
       CCD25004.1 223 EEELPFKVLCG-TPGYINLLDAFNSWPLVKELsaslNlpAAASFKHVSPAGAAVgvpmtevekqvycvsdikdLSPLACAYARARGADRMSSFG 315
                      34567889***.******************997655166888************9999999999999999877444899*************** PP

                      EEEEECCEE-HHHHHHHTTS-ECEEEECEE-CCHHHCCTTS..SS-EEEE-SS-......EEEEETTEEEEEE--G..TTCCCS.EEECSC.-- CS
  AICARFT_IMPCHas 162 giialnrevdaetaeeikkefleviiApsfeeealeilkkk..knlrvlelkee......elrsvsgglLvqerdeakieeeel.kvvtkk.kp 245
                      ++ial++ vd+ ta++i+ke+++++iAp++e+ealeil+kk  +++++l+++++      e r+v g +L+q+r++a i+++++ ++v+ + + 
       CCD25004.1 316 DFIALSNIVDVPTARIISKEVSDGVIAPGYEPEALEILSKKknGKYCILQVDPNyvpdcmESRQVYGITLQQKRNDAIINKSSFkEIVSANqSL 409
                      **************************************6662668********5556677*****8888************9997778775256 PP

                      -HHHHHHHHHHHHHCCCS-SS-EEEEETTEEEEEE-SSSSHHHHHHHHHHH CS
  AICARFT_IMPCHas 246 teeeledllfawkvvkhvkSNaivlakdgqtvgiGaGqmsRvdsarlAvek 296
                       e+++ dl++a+ ++k+++SN++++ak+g+++g+GaGq+sR++++rlA++k
       CCD25004.1 410 PEQAIIDLTVATLALKYTQSNSVCYAKNGMVIGLGAGQQSRIHCTRLAGDK 460
                      8899********************************************987 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   7.3e-28   6.6e-24       1      95 []      17     131 ..      17     131 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 7.3e-28
                 THHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCH.................HHHHHHHTTSCC...EEEEE--THHHHHHCHH CS
         MGS   1 glvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrv.................eildaikngeid...lvintlypfkatvakdg 79 
                 gl++lak l+e+++++lA+gGTa+l++eag pv +v+ +t+ +e+lggrv                 +++ ++++++i+   +vi++lypfk+tv+k g
  CCD25004.1  17 GLLDLAKGLVENNVRILASGGTAQLVREAGFPVDDVSSITHAPEMLGGRVktlhpaihggilarnleSDENDLRAQNIEkvdFVICNLYPFKETVSKIG 115
                 689*************************************************************************999999***************** PP

                 HHHHHHHHHTTSHEES CS
         MGS  80 ykirraaenidIplpt 95 
                 +++ +a+e+idI+++t
  CCD25004.1 116 VTVPEAVEEIDIGGVT 131
                 **************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       404  (0.0225333); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4227.77
//
Query:       CCD25005.1  [L=399]
Description: hypothetical protein NDAI_0E01890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.5e-120  402.6   0.0   1.7e-120  402.4   0.0    1.0  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil
  ------ inclusion threshold ------
      0.089   13.0   0.0       0.95    9.7   0.0    2.2  2  DUF5442       Family of unknown function (DUF5442)


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  402.4   0.0  1.9e-124  1.7e-120       1     342 []      16     368 ..      16     368 .. 0.97

  Alignments for each domain:
  == domain 1  score: 402.4 bits;  conditional E-value: 1.9e-124
                   CCCS-EEETTEEESSSEEE----S-TTTTTCS.HH.HHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGGHHHHHHHHHHHHHTT-EE CS
  Oxidored_FMN   1 kLFkPikignmtLknRivmapmtrlraldkgnvle.dlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeqieewrklteavhengskv 96 
                   +LFk +k+gn+t+++R+vmap+tr+ra+ +g +++ d+++ yy qr+++++t+iitea++++++s g+dnapgiw+ eqie+w+k+++++hengs+v
    CCD25005.1  16 DLFKALKVGNTTVEHRVVMAPLTRMRAHAPGHIPNkDWEVVYYDQRSKRKGTMIITEAVSPSAQSSGIDNAPGIWTPEQIEQWTKIFNKIHENGSFV 112
                   59*********************************************************************************************** PP

                   EEEEE--GGGS..SCSTCEC....SS.ESSSSSTTT-.....S...CS-EE--HHHHHHHHHHHHHHHHHHHHTT-SEEEEEE-CTSHHHHHH-TTT CS
  Oxidored_FMN  97 vvqlwhlGreakseyladqe..vdspsdpvaldaqee....esaeevykkeltkeeikqliqefveAAkraieAgfDgVeihganGYLlnqFlspks 187
                   +vql  +Gr+a+ +  a+++  +ds+sd+ ++d++ +    +s++++  + +tk+eikq+i++fv+ +k+a+eAg+DgVeih+ nG LlnqFl+p s
    CCD25005.1 113 WVQLCATGRQAFPDAMARDGlrYDSASDNLYMDDELKeraiKSNNPQ--HGITKDEIKQYIKDFVQGTKNAVEAGADGVEIHSCNGCLLNQFLDPTS 207
                   *******************999*************999999999999..************************************************ PP

                   ----STTSSSHHHHHHHHHHHHHHHHHHH-SSSEEEEEECE--STTS--HHHH...HHHHHHHCHCCEEEEEEETT-SSSSSTTS-TTTTHHHCC.. CS
  Oxidored_FMN 188 nkrtDeygGslenRarFllevvdaVkeavgeervgyRlSpedvvekgldfaet...aqkivllkelekrlkdgkklalvhaaeprkrgagsvrte.. 279
                   n+rtDeygGs+enR rF+lev+da  eavg ervg+RlSp + +  ++++a+     q++++++elekr+k+gk++a++h++epr+++ +   t   
    CCD25005.1 208 NHRTDEYGGSIENRSRFTLEVIDALIEAVGPERVGIRLSPWNRYAGMSGSADPtllSQYCYVVGELEKRAKAGKRIAFIHLIEPRVTDIFFDCTAvp 304
                   ****************************************************99*9********************************997766655 PP

                   TT.HHHHHHCCCHSSEEEE-SS--SHHHHHHHHHTTS-SEEEESTHHHH-TTHHHHHHCCTCGG CS
  Oxidored_FMN 280 qe.kntefvkevwkkplitvgriadeekaaeivaegeadLvamgRefladpdlveklkkglpln 342
                   ++ ++++f++++wk+ +i++g++ + ++  +++  ++++++a gR+f++ pdlv++l+kg pln
    CCD25005.1 305 EDdGTNDFIYSIWKGVVIRAGMFPSRPDSIKAAVANDQTMIAAGRYFISTPDLVDRLEKGQPLN 368
                   44599**********************88888889*************************9986 PP

>> DUF5442  Family of unknown function (DUF5442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.072   6.4e+02      40      58 ..     163     181 ..     149     203 .. 0.81
   2 ?    9.7   0.0   0.00011      0.95       4      31 ..     298     326 ..     296     341 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.072
     DUF5442  40 ekeklkeylkdisirtvnc 58 
                  k+++k+y+kd +  t n 
  CCD25005.1 163 TKDEIKQYIKDFVQGTKNA 181
                 4788999999987776664 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00011
     DUF5442   4 ytcgavse.ngandflkfvakgaiikygd 31 
                 + c av e +g+ndf+  + kg++i+ g 
  CCD25005.1 298 FDCTAVPEdDGTNDFIYSIWKGVVIRAGM 326
                 579999762699*************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2875.07
//
Query:       CCD25006.1  [L=338]
Description: hypothetical protein NDAI_0E01900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-16   59.4   0.0    3.4e-14   52.8   0.1    2.1  2  adh_short      short chain dehydrogenase
    8.8e-09   35.5   0.1    1.7e-08   34.6   0.0    1.5  1  KR             KR domain
    3.4e-07   30.1   0.0    1.9e-06   27.7   0.0    1.8  2  adh_short_C2   Enoyl-(Acyl carrier protein) reductase
    9.1e-07   28.6   0.0    1.2e-06   28.2   0.0    1.1  1  Epimerase      NAD dependent epimerase/dehydratase family
     0.0028   17.1   0.0     0.0041   16.6   0.0    1.2  1  GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
  ------ inclusion threshold ------
       0.21   10.7   0.1       0.88    8.6   0.0    2.0  2  RmlD_sub_bind  RmlD substrate binding domain


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.1   1.1e-17   3.4e-14       1     144 [.      39     190 ..      39     194 .. 0.83
   2 !    4.8   0.0    0.0059        18     145     191 ..     212     262 ..     206     266 .. 0.78

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1.1e-17
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEE.E-TTTSHHHHHHHHHHHHHHH..SSESEEEE---SS--SS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalai.qvDvtdreevealvekavkkl..gkldvLvnNAGitgsgp 92 
                 k+++vtG   GIG++++k l++++++v+ v r+++k  ++ +e  +e    + ++++i  +D  d + v+ + +k+++ +  ++l+++++NA++  +++
  CCD25006.1  39 KTAIVTGSNTGIGLQVVKLLYSKNCNVLSVVRTKSKGDAARDETIAEfpasKGSITVIgGCDYLDLTTVKPAASKIKDIIgdKPLNLIIHNAAL--MAS 135
                 79******************************99999888777776666544555544279*******************8889**********..444 PP

                 GGGCSHHH.HHHHHHHHTHHHHHHHHHHHHHHH..HCTTEEEEEEEEGGGTSB-T CS
   adh_short  93 fselseee.wervievNltgvflltravlpaml..kqssGrIvnvsSvagkvpva 144
                 ++  ++++ +e+++++N++g  ll + + p +l  +    rIv vsS a + +++
  CCD25006.1 136 VNTATSKQgYEAMFQTNVMGSQLLQHFLDPIFLkkDDDLKRIVWVSSGAHLLGFK 190
                 444555555************99888888888856666789******99776665 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0059
                 TBHHHHHHHHHHHHHHHHHHHHHGGGT.....EEEEEEEESSBSSHHHHHHC CS
   adh_short 145 gvaaYsAsKaavagltrslakelaptg.....irvnavaPGlvdTdmakelr 191
                   + Y+ sKaa +  ++++a   +++      ++v +++PG ++Td++++++
  CCD25006.1 212 ANTLYGQSKAANIFQAKAWASKNKEKVdeigcVSV-SCYPGNLKTDLQRDWN 262
                 5688*******999999999988877656333333.568********99877 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   5.7e-12   1.7e-08       3     144 ..      41     190 ..      39     211 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 5.7e-12
                 EEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHTT-EEEE-.---TT-HHHHHHHHHHHHHHS..S---EEEE---------TT CS
          KR   3 ylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaelealgaevevv.aaDvsdkdavealleeikaee..ppikGvihaAgvlrdklle 98 
                  ++tG   g+Gl++++ l++k  + l ++  +++ d++ +++iae+ a+  +++v+  +D  d + v+ + ++ik+    +p++ +ih A +++    +
  CCD25006.1  41 AIVTGSNTGIGLQVVKLLYSKNCNVLSVVRTKSKGDAARDETIAEFPASKGSITVIgGCDYLDLTTVKPAASKIKDIIgdKPLNLIIHNAALMASVN-T 138
                 69******************999999888777788999999*****9997777777369***********99999876789*********9887655.5 PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTT......S--SEEEEEEEHHHHH--T CS
          KR  99 emtaedleqvlapKvkGawnLhelled......esldffvlfSSiagllgsa 144
                  ++++ +e++++  v G++ L+++l +      ++l+ +v +SS a llg +
  CCD25006.1 139 ATSKQGYEAMFQTNVMGSQLLQHFLDPiflkkdDDLKRIVWVSSGAHLLGFK 190
                 678899****************9998777777799**************986 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   6.2e-10   1.9e-06       4     138 ..      48     192 ..      45     195 .. 0.83
   2 ?   -0.3   0.0      0.22   6.6e+02     138     179 ..     212     258 ..     206     269 .. 0.72

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 6.2e-10
                   TSHHHHHHHHHHHTT-EEEEEESSGGH.HHHHHHHHHHTTSE.....E.EE--TTSHHHHHHHHHHHHHHH..SSEEEEEE-----EGCSS-GGGH- CS
  adh_short_C2   4 sgIGraiAkalaeeGaevvltdlneea.kkrveelaeelgae.....v.lecDVtdeeqvealveevvekf..gklDilvnnagiapklkgpflets 91 
                    gIG +++k+l ++ ++v+ + + +++ +++ +e  +e++a+     v   cD  d ++v+ +++++++ +  + l+ +++na+ + +   + + ts
    CCD25006.1  48 TGIGLQVVKLLYSKNCNVLSVVRTKSKgDAARDETIAEFPASkgsitViGGCDYLDLTTVKPAASKIKDIIgdKPLNLIIHNAALMAS--VN-TATS 141
                   7****************9999988888766666666666643344343689********************7668************9..33.679* PP

                   HHHHHHHHHHHTHHHHHHHHHHHH.HCTSC...CEEEEEEEGGGTSBSTTT CS
  adh_short_C2  92 reefdraldvnlyslfllakaalp.lmkeg...gsivnlssvgaervvpny 138
                   +++++ ++++n+ +  ll + + p  +k+     +iv +ss +   ++++y
    CCD25006.1 142 KQGYEAMFQTNVMGSQLLQHFLDPiFLKKDddlKRIVWVSSGAHLLGFKEY 192
                   ************************6445447999*******9988888877 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.22
                   TT.HHHHHHHHHHHHHHHHHHHHGG..GTEEEEEEE..E--BHCTGG CS
  adh_short_C2 138 yn.aygaaKaalealtrylAvelgp..kgiRvNavs..pgpikTlaa 179
                    n  yg +Kaa +  ++++A +  +  ++i + +vs  pg +kT+++
    CCD25006.1 212 ANtLYGQSKAANIFQAKAWASKNKEkvDEIGCVSVScyPGNLKTDLQ 258
                   44499******999999999988873445555555555666666665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   4.1e-10   1.2e-06       2     160 ..      42     234 ..      41     247 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 4.1e-10
                 EEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..............EEEE--TT-HH....HHHHHHHHHT-SEEEE--S.---HHHHH CS
   Epimerase   2 lVtGatGfiGsalvkallekgyevigldrlssasntarledl..............elveldltdrs....alerlfkeeqpdavihlAa.vggvaass 81 
                 +VtG +  iG ++vk l +k+ +v+ + r +s++  ar+e++                 +ldlt  +    ++++++ ++  + +ih Aa  ++v++  
  CCD25006.1  42 IVTGSNTGIGLQVVKLLYSKNCNVLSVVRTKSKGDAARDETIaefpaskgsitvigGCDYLDLTTVKpaasKIKDIIGDKPLNLIIHNAAlMASVNTAT 140
                 8*************************************9999**********988855566666544556699*****************988887655 PP

                 HSH..HHHHHHHTHHHHHHHHHHH......HHTCTEEEEEEE.GGGGT.....SCSSSS.BSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH CS
   Epimerase  82 edp..adfieknlqgtlnlleaar......kagvkrllflsS.sevYG.....kdaeqp.keettltgplkpnspYaaaKlageklveayaaqy 160
                 +++  ++++++n++g++ l + +       + ++kr++ +sS +++ G      + + p  e  t ++    n+ Y+ +K+a   +++a+a ++
  CCD25006.1 141 SKQgyEAMFQTNVMGSQLLQHFLDpiflkkDDDLKRIVWVSSgAHLLGfkeygINWDDPtFENCTVEERPSANTLYGQSKAANIFQAKAWASKN 234
                 5441267889*******999999988887666999*******65555533222444456455555566669************99999998876 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.4e-06    0.0041       2     168 ..      43     231 ..      42     243 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEE....E--TT-....HHHHHHHHHHHT-SEEEE--S-.--. CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklh....kgDltD....ssslerllaevqpdevynLAAq.sh. 87 
                    +TG +  iG  +++lL +k+ +v  +vr +s+ +++r e++a+ p +  +++++++    + Dlt     +s++++++ +   + +++ AA     
     CCD25006.1  43 VTGSNTGIGLQVVKLLYSKNCNVLSVVRTKSKGDAARDETIAEFPAS--KGSITVIggcdYLDLTTvkpaASKIKDIIGDKPLNLIIHNAALmASv 136
                    8999989***********************************99975..46777552222556664444456788888888999****99874441 PP

                    .HHHHTTSHHHHHHHHTHHHHHHHHHHHHC...T..TTSEEEEEEEGGG......G-S-SSSSB-TTS---....--SHHHHHHHHHHHHHHHHH CS
  GDP_Man_Dehyd  88 .VdvsfekPeytaevnvlGtlrLLeairal...glekkvrfyqaStsEv......YGkvqevpqtEttpfy....PrsPYaaaKlyadwivvnyr 168
                      ++s +  e+++++nv+G + L      +   + ++ +r++ +S+         YG   + p  E+  ++    ++  Y+ +K++  + ++++ 
     CCD25006.1 137 nTATSKQGYEAMFQTNVMGSQLLQHFLDPIflkKDDDLKRIVWVSSGAHllgfkeYGINWDDPTFENCTVEerpsANTLYGQSKAANIFQAKAWA 231
                    24667788899********9877655554411133345888888886532333337777677766654443111157778888888777777765 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0003      0.88       4      82 ..      42     156 ..      39     162 .. 0.64
   2 ?   -2.6   0.0      0.76   2.3e+03     116     131 ..     207     222 ..     202     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0003
                    EEESTTSHHHHHHHHHCTTTSEEEEEE-TT.............................T--TTSHH....HHHHHHHHH--SEEEE------.HH CS
  RmlD_sub_bind   4 lvtGanGqlGseLakqlaeeglevlaltre.............................eldltdae....avaellkeakpdvvvnaAAyta.vD 65 
                    +vtG+n  +G +++k+l +++++vl++ r+                              ldlt  +    ++++++ ++  +++++ AA  a v 
     CCD25006.1  42 IVTGSNTGIGLQVVKLLYSKNCNVLSVVRTkskgdaardetiaefpaskgsitviggcdYLDLTTVKpaasKIKDIIGDKPLNLIIHNAALMAsVN 137
                    79************************9776677777777777777777777777776665555544300013344444445556666665543256 PP

                    HHHHS..HHHHHHHHTHHH CS
  RmlD_sub_bind  66 kaEse..eeaayavnaeav 82 
                     a s+   ea ++ n+ ++
     CCD25006.1 138 TATSKqgYEAMFQTNVMGS 156
                    6655533455556666655 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.76
                    TS----SSHHHHHHHH CS
  RmlD_sub_bind 116 ddetsPlnvYGrtKla 131
                    ++++s  ++YG++K+a
     CCD25006.1 207 EERPSANTLYGQSKAA 222
                    5667777889999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2559.83
//
Query:       CCD25007.1  [L=421]
Description: hypothetical protein NDAI_0E01910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-80  271.4   0.0    1.4e-80  271.3   0.0    1.0  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.3   0.0   7.5e-85   1.4e-80       2     363 .]      31     408 ..      30     408 .. 0.97

  Alignments for each domain:
  == domain 1  score: 271.3 bits;  conditional E-value: 7.5e-85
                    EEEESSSSSTTSTTSS.HHHHHHHHHHHHHHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCTTCHTTGGEGEEEESHHHHHHHHHHHHHHHTTT- CS
  Aminotran_1_2   2 dvinLgsneylgdsgk.ptlpevakaekegalaggtlneygpidglpeleealakflg..rseklklkreaavvvgsGagaliealifllklnpgd 94 
                    ++++Lg+++y++ +gk ++lp+v+ ae  ++++ + ++ey++i gl ++ +     l+  +s ++k+ r ++ +  sG+gal  a++f+ k++p++
     CCD25007.1  31 HKVDLGIGAYRDNNGKpWVLPSVKLAEHSIHSDPSYNHEYLNISGLNAFTTGASNILFgpDSIAIKESRIVSNQSVSGTGALHIAAKFISKFFPEK 126
                    799**************************99***********************999989999********************************* PP

                    EEEEEESS-THHHHHHHHTTSEEEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETT CS
  Aminotran_1_2  95 eilvpdptyasyknilrlsggevvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaY 190
                    +i+ ++pt+a+++ i+++  +++ +yp++++++ ++d+e++++a+k+ap g++   ++l++++hNPtG ++t e++  +ld+ +   +l+++D aY
     CCD25007.1 127 KIYFSKPTWANHQAIFQAQNLQCDSYPYWDAATKSIDMEGYLNAIKTAPRGSV---FVLHACAHNPTGLDPTNEQWANILDMLNMGDHLVLFDSAY 219
                    *****************************************************...**************************************** PP

                    TTCBSSSS..HTHHHHGGSTTSTT...EEEEEESSSTTSSGGG-EEEEEEEH..............HHHHHHHHHHHHHTS..SHHHHHHHHHHHH CS
  Aminotran_1_2 191 agfvfgsl..davatranveeepn...llivgslsKafGlaGeRvGyilgna..............avvsqlrklsrpfls..ssllqaavaaals 265
                    +gf++g+l  da+a+r++ve+  +   +++++s++K+ G++GeRvG++  +               a+ sql+k++r+ +s  +++++++va++l+
     CCD25007.1 220 QGFASGDLnkDAYAVRLGVEKLSDnvpIFVCQSFAKNVGMYGERVGCFHLVLprqsnedetakvkaALSSQLNKIVRSEISnpPAYGAKIVAQILN 315
                    ***************666666655566********************99866699***************************************** PP

                    HHHHHHH...HHHHHHHHHHHHHHHHHHHHHHS....TEEEECCSCSSEEEEEETHHCHHHHHHHHHHTCTEEEEEGGGGTSTTEEEEECTTS-HH CS
  Aminotran_1_2 266 dallkqs...eleemrqrlqkrrkelrdeLael....glkvlasqsgmflltdlsaetakelskkLleevgvyvtpgtsftvpgrlRitvAgltee 354
                    d++++++   ++ +m +r++k+r++lrd+L+el    +++++ sq+gmf++t+l+a     + k L ee+ +y++         ++R ++Agl+e 
     CCD25007.1 316 DENMTNQwhkDMVTMSSRIIKMRHSLRDKLNELgtpgNWDHIVSQTGMFSFTGLTAD----MVKRLEEEHAIYMVS--------SGRASIAGLNEH 399
                    *******999999999***************************************99....9999***********........9*********** PP

                    HHHHHHHHH CS
  Aminotran_1_2 355 eleelveal 363
                    +++++++++
     CCD25007.1 400 NVDHVAKSI 408
                    ******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       624  (0.0348039); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3204.08
//
Query:       CCD25008.1  [L=369]
Description: hypothetical protein NDAI_0E01920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-15   57.1   0.8    4.1e-15   55.5   0.8    1.9  1  SNARE           SNARE domain
    1.5e-08   33.6   1.1    2.9e-08   32.7   1.1    1.5  1  Syntaxin-5_N    Syntaxin-5 N-terminal, Sly1p-binding domain
    0.00037   20.2   0.6    0.00037   20.2   0.6    3.4  3  Syntaxin        Syntaxin
      0.002   18.3   2.7      0.002   18.3   2.7    2.8  3  Syntaxin-18_N   SNARE-complex protein Syntaxin-18 N-terminus
  ------ inclusion threshold ------
      0.014   15.9   1.4      0.014   15.9   1.4    3.2  3  DUF16           Protein of unknown function DUF16
          1    9.4  13.0        2.1    8.4   0.6    3.7  3  DUF1664         Protein of unknown function (DUF1664)
        1.1    8.9  21.3       0.18   11.4   8.4    2.3  2  Spt20           Spt20 family
        1.2    9.0  10.6       0.12   12.2   0.6    2.7  3  MCPsignal       Methyl-accepting chemotaxis protein (MCP) sig


Domain annotation for each model (and alignments):
>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.8   1.8e-18   4.1e-15       1      53 []     314     366 ..     314     366 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 1.8e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                 e+++rId+nV++++ n+ +aq+eL k++ + ksnR+l ++i+ i+++++l+++
  CCD25008.1 314 EVIQRIDANVDDIDLNITGAQRELLKYFDRIKSNRWLAVKIFFIIFVFFLLWV 366
                 79************************************************997 PP

>> Syntaxin-5_N  Syntaxin-5 N-terminal, Sly1p-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   1.1   1.3e-11   2.9e-08       2      23 .]       5      26 ..       4      26 .. 0.96

  Alignments for each domain:
  == domain 1  score: 32.7 bits;  conditional E-value: 1.3e-11
  Syntaxin-5_N  2 apmSirDRTsEFqSivkslQkR 23
                  +p +irDRTsEFq+ v +++kR
    CCD25008.1  5 QPRNIRDRTSEFQQSVLTCKKR 26
                  899******************9 PP

>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   2.8      0.12   2.7e+02      11      69 ..       9      66 ..       4      85 .. 0.51
   2 !    7.4   2.1    0.0014       3.1      12     115 ..      48     158 ..      43     175 .. 0.71
   3 !   20.2   0.6   1.6e-07   0.00037     168     200 .]     281     313 ..     269     313 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.12
    Syntaxin 11 ikkeiekleeevkklkkqneesktstraksvklkkrmesdikeikkraesvkarLeaLd 69
                i++ +++ +++v   kk  ++s ++ ++ ++  + +++   ++ +  a+++ +  + L+
  CCD25008.1  9 IRDRTSEFQQSVLTCKKRSKQSQQQQTQANT-QRGKISDFQRNASLIANEISQTAQLLS 66
                5555555555555555555555444444444.444444444444444444444333333 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0014
    Syntaxin  12 kkeiekleeevkklkkqneesktstraksvk..lkkrmesdikeikkraesvkarLeaLdksnkenekks.....gegsavdRirksqtaaLrkklkev 103
                 +++ + +++e+++  +  +++    ++k +      ++ ++   ik++  s+++ L +L+ks ++n++ +     g+ ++ d  ++ +++ L++k+k++
  CCD25008.1  48 QRNASLIANEISQTAQLLSKLAILAKRKPMVndSPVEIAELSFLIKRKIYSIESSLIELSKSRRNNKSVAgvndfGRRNTGDEHSSNVVTLLNTKMKNI 146
                 44444444444444444444444444444421222356777788***********************999777787777888888999999******** PP

    Syntaxin 104 mteynelrekir 115
                   +++++ e  +
  CCD25008.1 147 SGDFKNVLEMRQ 158
                 ****88654433 PP

  == domain 3  score: 20.2 bits;  conditional E-value: 1.6e-07
    Syntaxin 168 ieeRhkevlelekslkeLhqlFldmavLVEeQG 200
                  +eR+++v  +e+ ++e+ +lF ++a +V+eQG
  CCD25008.1 281 LQERNQAVETIESTIQEVGNLFQQLASMVQEQG 313
                 49******************************9 PP

>> Syntaxin-18_N  SNARE-complex protein Syntaxin-18 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   2.7     9e-07     0.002       1      63 [.      10      66 ..      10      69 .. 0.81
   2 ?    0.7   0.4      0.28   6.3e+02       2      33 ..     145     186 ..     144     202 .. 0.56
   3 ?   -3.0   0.0       4.1   9.2e+03      60      72 ..     240     252 ..     239     264 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 9e-07
  Syntaxin-18_N  1 mDiTplFkasVktvkasssskseekeakkrkkkrlkkskekdeFikeAkeilkhItkLrkfLl 63
                   +D+T++F++sV t+      k+++k++++++++  +++ + ++F + A  i++ I++  ++L+
     CCD25008.1 10 RDRTSEFQQSVLTC------KKRSKQSQQQQTQANTQRGKISDFQRNASLIANEISQTAQLLS 66
                   59************......55555666667777788888899***********998777776 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.28
  Syntaxin-18_N   2 DiTplFkasVktvk..........asssskseekeakkrkkk 33 
                    +i+ +Fk +++  +          ++ s++++ k++++++++
     CCD25008.1 145 NISGDFKNVLEMRQqlelnnmdrwEKISKDEQLKQQQQQQQQ 186
                    567778888888777766665544222223333333333333 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 4.1
  Syntaxin-18_N  60 kfLleirkaYlnv 72 
                    ++Ll+++++Y  +
     CCD25008.1 240 DMLLTNQSNYNKD 252
                    7999999999765 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   2.0     0.038        85      50      98 ..      16      64 ..       6      69 .. 0.75
   2 ?   -0.8   3.1      0.93   2.1e+03      61      76 ..     168     185 ..     129     212 .. 0.54
   3 ?   15.9   1.4   6.1e-06     0.014      27      79 ..     279     331 ..     270     345 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.038
                HHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHH CS
       DUF16 50 inkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkR 98
                +++   + +k  ++ ++++ + ++q+ ++   ++   li++ + ++ + 
  CCD25008.1 16 FQQSVLTCKKRSKQSQQQQTQANTQRGKISDFQRNASLIANEISQTAQL 64
                4555556678888888889999999999999999999999988877665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.93
                 HHHHHHHHH..HHHHHHH CS
       DUF16  61 gekikelkv..eqkaqge 76 
                  eki++ ++  +q++q++
  CCD25008.1 168 WEKISKDEQlkQQQQQQQ 185
                 333422211001111111 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 6.1e-06
                 HB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH... CS
       DUF16  27 efkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln 79 
                  + ++ +q ++ ie +++  g+ +++l+  v++qge i+++ ++++  + ++ 
  CCD25008.1 279 VYLQERNQAVETIESTIQEVGNLFQQLASMVQEQGEVIQRIDANVDDIDLNIT 331
                 499999********************************999998887666555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.7     0.026        59      73     114 ..      27      69 ..       5      75 .. 0.70
   2 ?    4.1   0.1      0.02        44      86     115 ..     133     162 ..     125     170 .. 0.85
   3 ?    8.4   0.6   0.00092       2.1      52      95 ..     286     329 ..     265     347 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.026
     DUF1664  73 kkldeqkeiskeike.evtevredlseigedvesvkeavegle 114
                 +k+ +q+++++++++ ++++ +++ s i +++++  ++ ++l+
  CCD25008.1  27 SKQSQQQQTQANTQRgKISDFQRNASLIANEISQTAQLLSKLA 69 
                 3555666666666543899999999999999999988888875 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.02
     DUF1664  86 keevtevredlseigedvesvkeavegles 115
                 ++ vt ++ ++++i+ d+++v e+ ++le 
  CCD25008.1 133 SNVVTLLNTKMKNISGDFKNVLEMRQQLEL 162
                 56789999****************999984 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00092
     DUF1664  52 qvseslaatkrhLssridrvdkkldeqkeiskeikeevtevred 95 
                 q  e++++t ++  +  +++ + ++eq e+++ i+++v+++  +
  CCD25008.1 286 QAVETIESTIQEVGNLFQQLASMVQEQGEVIQRIDANVDDIDLN 329
                 34445555555555555555555555555555555555555555 PP

>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   4.9     0.027        60      91     123 ..       9      41 ..       7      73 .. 0.57
   2 ?   11.4   8.4   7.8e-05      0.18      93     169 ..     149     229 ..     146     278 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.027
       Spt20  91 vrDhrnsvaqsqktqdqkqsqqnqqqqqqqqqq 123
                 +rD ++ ++qs  t ++ ++q++qqq+q ++q 
  CCD25008.1   9 IRDRTSEFQQSVLTCKKRSKQSQQQQTQANTQR 41 
                 788888899988886444443222222222222 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 7.8e-05
       Spt20  93 Dhrnsvaqsqktq....dqkqsq....qnqqqqqqqqqqqqqqqqqqeqqqqqnekdsttteekekksksknnssksktttkkpk 169
                 D++n+ + +q+ +    d         ++ +q +qqqqqqqq  q  +q  qq e ++  t e+++k   +n  ++s ++ + p 
  CCD25008.1 149 DFKNVLEMRQQLElnnmD----RwekiSKDEQLKQQQQQQQQIPQGHTQPGQQRERQNDGTIEDSNKTGGSNVMGTSSYNSSNPF 229
                 899999998766544331....245566667777777777777777777777777777777777777777777777777666664 PP

>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   1.6     0.076   1.7e+02     100     148 ..      25      69 ..       7      89 .. 0.56
   2 ?   -2.0   0.0       1.2   2.6e+03     117     140 ..     130     153 ..      84     172 .. 0.57
   3 ?   12.2   0.6   5.3e-05      0.12     124     169 ..     282     327 ..     270     330 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.076
                 ..........HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 100 keindsvesleetrqrveegselveetgealkeiveavaevadlvqeia 148
                 k +++     ++ ++++++   ++++ +++ + i++++++ a+l++ +a
  CCD25008.1  25 KRSKQ----SQQQQTQANTQRGKISDFQRNASLIANEISQTAQLLSKLA 69 
                 22222....2344444444455555556666666666666666655555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
                 HHHHHHHHHHCCHHHHHHHHHHHH CS
   MCPsignal 117 eegselveetgealkeiveavaev 140
                 e++s+ v   ++++k+i+   ++v
  CCD25008.1 130 EHSSNVVTLLNTKMKNISGDFKNV 153
                 334444444445555555555544 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 5.3e-05
                 HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 124 eetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveeva 169
                 +e ++a+++i ++++ev +l q++a+ ++eq + i+ +  +v+ ++
  CCD25008.1 282 QERNQAVETIESTIQEVGNLFQQLASMVQEQGEVIQRIDANVDDID 327
                 667889999*****************************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2377  (0.132579); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 2590.15
//
Query:       CCD25009.1  [L=251]
Description: hypothetical protein NDAI_0E01930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-49  165.7  20.5      7e-49  165.7  20.5    2.0  2  Snf7             Snf7
     0.0027   17.6   0.6      0.012   15.5   0.6    2.1  1  NuA4             Histone acetyltransferase subunit NuA4
  ------ inclusion threshold ------
      0.024   14.6   0.8      0.057   13.4   0.6    1.9  1  IF3_C            Translation initiation factor IF-3, C-termin
       0.38   10.6   0.1       0.38   10.6   0.1    2.6  3  NOG1             Nucleolar GTP-binding protein 1 (NOG1)
        4.4    7.8  15.5       0.87   10.0   6.9    3.1  3  Snapin_Pallidin  Snapin/Pallidin
        4.8    7.5   7.3        4.6    7.6   1.0    2.8  2  DUF948           Bacterial protein of unknown function (DUF94


Domain annotation for each model (and alignments):
>> Snf7  Snf7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.7  20.5   2.4e-52     7e-49       2     172 ..      29     217 ..      28     218 .. 0.97
   2 ?    0.3   2.3      0.16   4.7e+02     130     154 ..     226     250 ..     219     251 .] 0.82

  Alignments for each domain:
  == domain 1  score: 165.7 bits;  conditional E-value: 2.4e-52
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
        Snf7   2 airsLrkaerkldkkqeslekkikkleaelkklakkgnkdralllLKqkkryekqldqldnqlanleqvslaienlksnkevlnamkqgakamkamnkk 100
                 ai +Lr++++ l kkq +l+++i ++ +e+k +  kgnk +a++ LK++k ye+ql ++d+q ++leq++++ie+++ n e+++amkqg  amk+++k 
  CCD25009.1  29 AIIELREHINLLTKKQTHLQTQILNQSNEAKTFLNKGNKIMAKNSLKKRKIYENQLGKIDSQIYSLEQQLFSIESANLNLETMKAMKQGSMAMKSIHKG 127
                 6789*********************************************************************************************** PP

                 TCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTT-.GGTTHHHHHHHHHHHHHHHHHCSH..................HHHHHHHTXXXST CS
        Snf7 101 vdidkidklmdeiedqmekaeeisEalsrsldda.deedEeeleaeLdaLeqelgdeell.................desvklpevPsee 172
                 ++idk+d++mdei+dq+e +eeisEa+sr++ +  +++dE+el++eLd+L++e  +++                   +++v+lp+vPs++
  CCD25009.1 128 LNIDKVDETMDEIRDQVELNEEISEAISRPVLTSmNDIDEDELDEELDMLASESVQQNVErskgrvhdmveesardnNNAVELPNVPSNK 217
                 ******************************98778******************99999779***************99**********97 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.16
                 HHTT-GGTTHHHHHHHHHHHHHHHH CS
        Snf7 130 slddadeedEeeleaeLdaLeqelg 154
                 s + a+ee+E+e e+ L +L++e+g
  CCD25009.1 226 SNEPAQEESEDEDERALRELQAEMG 250
                 4555699***************986 PP

>> NuA4  Histone acetyltransferase subunit NuA4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.6   3.9e-06     0.012       3      33 ..      71     101 ..      69     110 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.9e-06
        NuA4   3 kellkkkrelekelakleeqIydkEteYlee 33 
                 k++lkk++  e++l k+++qIy++E++ ++ 
  CCD25009.1  71 KNSLKKRKIYENQLGKIDSQIYSLEQQLFSI 101
                 67899*********************99975 PP

>> IF3_C  Translation initiation factor IF-3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.6   1.9e-05     0.057      21      52 ..      55      86 ..      43     126 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
                HHHHHHHHHHT-EEEEEEE--S-TTSHHHHHH CS
       IF3_C 21 lknarkFLeegdkvKvtlrfrGReiahkelgk 52
                 ++a+ FL++g+k+ ++  ++ R+i  ++lgk
  CCD25009.1 55 SNEAKTFLNKGNKIMAKNSLKKRKIYENQLGK 86
                689***************************97 PP

>> NOG1  Nucleolar GTP-binding protein 1 (NOG1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.62   1.9e+03      26      47 ..      36      57 ..      30      68 .. 0.63
   2 ?   -1.0   0.1       0.5   1.5e+03      27      35 ..      90      98 ..      88     104 .. 0.84
   3 ?   10.6   0.1   0.00013      0.38      29      58 .]     138     166 ..     130     166 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.62
        NOG1 26 ecgysleeQlsLleeikelfan 47
                +    +++Q +L  +i ++ ++
  CCD25009.1 36 HINLLTKKQTHLQTQILNQSNE 57
                5555567888888888766554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.5
        NOG1 27 cgysleeQl 35
                  ysle+Ql
  CCD25009.1 90 QIYSLEQQL 98
                579*****7 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00013
        NOG1  29 ysleeQlsLleeikelfankpvivvlnKiD 58 
                  ++ +Q++L eei e ++ +pv++ +n iD
  CCD25009.1 138 DEIRDQVELNEEISEAIS-RPVLTSMNDID 166
                 5799**************.9****999887 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.9   0.00029      0.87      12      82 ..      27     101 ..      23     109 .. 0.75
   2 ?    0.7   2.4      0.24   7.2e+02      36      60 ..     101     126 ..      77     155 .. 0.50
   3 ?    2.0   0.6     0.094   2.8e+02      15      41 ..     130     155 ..     127     202 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00029
  Snapin_Pallidin  12 epkldeldeklkelrqsQeeLleqldrlnekLkeleeaqe....aevlpdlkeyakKLvnikkrmsslnerlqkl 82 
                      + ++ el+e+++ l+++Q++L+ q+ +++++ k + +  +    +++l++ k y + L +i  ++ sl+++l ++
       CCD25009.1  27 KKAIIELREHINLLTKKQTHLQTQILNQSNEAKTFLNKGNkimaKNSLKKRKIYENQLGKIDSQIYSLEQQLFSI 101
                      678999*******************99999977665543310014566777778888888888888888877665 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.24
  Snapin_Pallidin  36 ldrlnekLkeleeaqe.aevlpdlke 60 
                      +++ n +L+ ++ +++ + +++ +++
       CCD25009.1 101 IESANLNLETMKAMKQgSMAMKSIHK 126
                      45555555555555554444444433 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.094
  Snapin_Pallidin  15 ldeldeklkelrqsQeeLleqldrlne 41 
                      +d++de+  e+r  Q eL+e++++  +
       CCD25009.1 130 IDKVDETMDEIR-DQVELNEEISEAIS 155
                      677888888876.48888888887654 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   1.0    0.0015       4.6      20      69 ..      29      78 ..      27      97 .. 0.86
   2 ?    2.7   0.7      0.05   1.5e+02      23      52 ..     132     161 ..     111     209 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0015
      DUF948 20 vllklkktldeaaatieelekqvdpilkevedllakvnelledvneklek 69
                ++++l++ ++ +++  ++l+ q+ + ++e+++ l+k n++++  + k  k
  CCD25009.1 29 AIIELREHINLLTKKQTHLQTQILNQSNEAKTFLNKGNKIMAKNSLKKRK 78
                67899999999****************************98876665554 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.05
      DUF948  23 klkktldeaaatieelekqvdpilkevedl 52 
                 k+ +t+de+++++e  e+  ++i++ v + 
  CCD25009.1 132 KVDETMDEIRDQVELNEEISEAISRPVLTS 161
                 455556666655555554444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2309  (0.128786); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 1909.29
//
Query:       CCD25010.1  [L=235]
Description: hypothetical protein NDAI_0E01940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-19   70.2   4.7    2.1e-19   69.7   4.7    1.2  1  Sdh_cyt   Succinate dehydrogenase/Fumarate reductase transmem
  ------ inclusion threshold ------
      0.098   12.1   0.7       0.11   11.9   0.7    1.1  1  JUPITER   Microtubule-Associated protein Jupiter


Domain annotation for each model (and alignments):
>> Sdh_cyt  Succinate dehydrogenase/Fumarate reductase transmembrane subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   4.7   2.4e-23   2.1e-19       2     118 ..     104     229 ..     103     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 2.4e-23
     Sdh_cyt   2 rknrplsphlqlyrlplgawlsilhritGvallvglllllvwlllalslsspesfarv.....vallas.....piklilllllllallyHllnGiRhl 90 
                 r +rp+sphl++y+++l+++ls lhr+t v++ ++++l+ +++ l+ ++ s  s +++     ++++++       + ++  ++++ +  H++  +Rhl
  CCD25010.1 104 RAKRPISPHLTIYQPQLTWYLSSLHRVTLVLMGFAFYLVTIAFGLTGLFQSNNSENKLtsnslINWYHNkmsnmTKWTVK-GAFAYMFTLHYALSVRHL 201
                 789*******************************9999999999999999999999999999*66666666667667777.999999999********* PP

     Sdh_cyt  91 lwDlglglelesarksalavlalavalv 118
                 +wD+ + l+l+ ++++++a++++a+++ 
  CCD25010.1 202 IWDMAKELSLKGVYRTGYAAMGFAALVG 229
                 ***99999**********9999998765 PP

>> JUPITER  Microtubule-Associated protein Jupiter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.7   1.3e-05      0.11     149     204 ..      47     102 ..       7     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.3e-05
     JUPITER 149 sasssvssstenlkinsGsrsvfrnmstaagekskqkksdtdgasllsvessaaed 204
                 s+sss sss   l  n+ sr+  +nm t  +  ++++ +++ ++s  +++s++  +
  CCD25010.1  47 SSSSSSSSSIPILMKNTASRTTLQNMMTIRSFTQNSILNENVPSSKDTQDSTILRE 102
                 778888999999*9**************9999999999999999988888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       845  (0.0471303); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1878.23
//
Query:       CCD25011.1  [L=669]
Description: hypothetical protein NDAI_0E01950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-29  103.0   0.3    5.5e-29  101.6   0.3    1.8  1  Abhydrolase_1   alpha/beta hydrolase fold
    2.3e-22   78.3   0.1    5.3e-22   77.2   0.1    1.6  1  Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
      4e-05   23.0   0.0    0.00081   18.7   0.0    2.3  1  Hydrolase_4     Serine aminopeptidase, S33
     0.0029   17.3   0.1        2.8    7.6   0.0    2.4  2  FSH1            Serine hydrolase (FSH1)
     0.0053   16.6   0.1       0.41   10.4   0.0    2.4  2  Abhydrolase_2   Phospholipase/Carboxylesterase


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.3   1.5e-32   5.5e-29       2     256 ..     109     405 ..     108     406 .. 0.90

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 1.5e-32
                    EEEEE-STTTCGGGGTTGHHHHHHHHT..........TSEEEEEEETTSTTSSSTTTGB...........CHHSHHHHHHHHHHHHHHCTTSSEEE CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd..........gfdvillDlrGvgySspapacin..........ddygtasvaddldrildalgddkltl 77 
                     + ++hGl+++sd+w++      L+k+          g+dv++ + rG+ yS++++ + +          d++ ++++ +++d+il++   dkl++
     CCD25011.1 109 IVYLHHGLLMCSDIWCC-----QLDKNknlpfvlhnlGYDVWMGNNRGNKYSTAHLYEMPkskkfwdfsiDEFAFFDIPNSIDFILNHCQRDKLIC 199
                    699**************.....33333345789************************988************************************ PP

                    EEETHHHHHHHHHHHHH...GGGEEEEEEESE.CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHH.HHHHHHCCSCHHHHHHHHHHHHHH....H CS
  Abhydrolase_1  78 vGhSmGGmialayaaey...perVkalvllga.idpaaslieaqrqqaksfpdffdgyaadcarnp.agplladelaaleqrhrlvdalkf....p 164
                    +G+S+G+++++a ++ +   +++V+ ++++++ ++p+  +++  ++ aks p  +  ++  +   p a +++++ l+   +++++   +       
     CCD25011.1 200 IGFSQGSAQMFASFSINeylNSKVSQFIAIAPaMTPKGLHNRIVDTFAKSSPALMYLFFGRNILLPsATTIWQKTLHPKIFNLCIDIGNRIlfnwT 295
                    ***************9999****************************************9998755166788888888888877655444499777 PP

                    CHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHC...................THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS.. CS
  Abhydrolase_1 165 dkskrfpssgsdnasslatgalksieqwpttdsaklllrlre...................lknvlaptlvisgtsDplvppkaledlaqllpk.. 239
                    +k+ +  ++ + +++  +t+++ks+ +w + ++++++++++                     +n+++p+l+i+g  D lv++k++ ++   lp+  
     CCD25011.1 296 SKNISEQQKLICYSKLYSTTSVKSVVHWFQILKSQKFQMFEAsdnmfnsitrpyqisrfptRTNIKIPILLIYGGMDSLVDIKVMKKN---LPQtg 388
                    7777777788889********************************************************************9555544...45555 PP

                    EEEEEEETCSSSHHHHS CS
  Abhydrolase_1 240 krlvvisdagHlafleg 256
                    ++ +++++ +Hl++++g
     CCD25011.1 389 VFDIKVENHEHLDLIWG 405
                    99999999999999987 PP

>> Abhydro_lipase  Partial alpha/beta-hydrolase lipase region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.1   1.5e-25   5.3e-22       1      63 [.      66     126 ..      66     127 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.2 bits;  conditional E-value: 1.5e-25
  Abhydro_lipase   1 vseiirkhGypveeheVqTeDGYiLtlhRipaknksvssklekkpvVlLqHGLlasSevwvln 63 
                     ++e++ ++++++e+h V+TeD+YiLtlhRip+k   +  +++++++V+L+HGLl++S+ w+++
      CCD25011.1  66 IHEMCAQFDINIEDHLVRTEDDYILTLHRIPPKT--NITGSGTGKIVYLHHGLLMCSDIWCCQ 126
                     579*******************************..699**********************96 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.2e-07   0.00081      27     212 ..     137     382 ..     109     399 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.2e-07
  Hydrolase_4  27 LaaqGfavyalDhrGhGrse.........gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliallyl..lrypd.kvaglilsaPalk 112
                  L + G++v++ ++rG   s           k ++++  +    D+   ++ + ++ ++ +l+++G S G++  ++ +   +y + kv+ +i +aPa+ 
   CCD25011.1 137 LHNLGYDVWMGNNRGNKYSTahlyempksKKFWDFSIDEFAFFDIPNSIDFILNHCQRDKLICIGFSQGSAQMFASFsiNEYLNsKVSQFIAIAPAMT 234
                  66778888888888888888555444443333333333334446666679999888899************99999866555556999*********9 PP

  Hydrolase_4 113 ikakl......................kappllklllkllgkllpklqv.......................snnlkadslsrdpevvaayeadplvh 165
                  +k                                              +                        n++++++ s++ ++++++   + + 
   CCD25011.1 235 PKGLHnrivdtfaksspalmylffgrnI--------------------LlpsattiwqktlhpkifnlcidiGNRILFNWTSKNISEQQKLICYSKLY 312
                  9855455455444333333333332221....................1455555666666677777777**9************9999999988888 PP

  Hydrolase_4 166 gkitvrlllelldamkrleeraakit.......................lPllllhGeaDkvvdpeasre 212
                   +++v+ +++ ++++k+ + +  +++                       +P+ll++G+ D +vd +  ++
   CCD25011.1 313 STTSVKSVVHWFQILKSQKFQMFEASdnmfnsitrpyqisrfptrtnikIPILLIYGGMDSLVDIKVMKK 382
                  8999999888888888877777777777788999999999*99999999**************9876655 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00097       3.5      70     115 ..     165     208 ..     145     251 .. 0.81
   2 !    7.6   0.0   0.00078       2.8     153     179 ..     352     379 ..     300     399 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00097
        FSH1  70 sraWfrkkdekneyegleesldavkdyikengpfdGiiGFSqGaal 115
                 s+ ++  + ++ ++ ++ +s+d++ +++++ +     iGFSqG+a 
  CCD25011.1 165 SKKFWDFSIDEFAFFDIPNSIDFILNHCQRDK--LICIGFSQGSAQ 208
                 555666666688899999***********999..568******974 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00078
        FSH1 153 eyy.eedkiqtptLhvlGelDtvvdeer 179
                 + + + ++i++p+L ++G  D++vd + 
  CCD25011.1 352 SRFpTRTNIKIPILLIYGGMDSLVDIKV 379
                 24468899****************9654 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.013        48     103     117 ..     193     207 ..     177     234 .. 0.79
   2 !   10.4   0.0   0.00011      0.41     148     178 ..     353     383 ..     341     421 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.013
                    -GGGEEEEEETHHHH CS
  Abhydrolase_2 103 pssriiigGFSqGaa 117
                    ++++ i +GFSqG a
     CCD25011.1 193 QRDKLICIGFSQGSA 207
                    677888899999976 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00011
                    TTS-GGGGG-EEEEEEETT-SSS-HHHHHHH CS
  Abhydrolase_2 148 ssatavtkklpilqiHgeeDpvvplalgkaa 178
                      +t+++ k+pil+i+g +D +v++ ++k+ 
     CCD25011.1 353 RFPTRTNIKIPILLIYGGMDSLVDIKVMKKN 383
                    45789999*****************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1185  (0.066094); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 4620.64
//
Query:       CCD25012.1  [L=606]
Description: hypothetical protein NDAI_0E01960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-68  229.6   0.1    6.7e-68  228.9   0.1    1.3  1  Pkinase         Protein kinase domain
    5.7e-27   94.6   0.2    1.3e-19   70.5   0.0    2.2  2  Pkinase_Tyr     Protein tyrosine kinase
    0.00013   21.4   0.1     0.0007   19.0   0.0    2.4  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.026   13.9   0.2        1.7    7.9   0.1    2.4  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.082   12.9   1.2        2.9    7.9   0.5    3.0  3  DUF2441         Protein of unknown function (DUF2441)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.9   0.1   1.9e-71   6.7e-68       1     264 []     237     566 ..     237     566 .. 0.96

  Alignments for each domain:
  == domain 1  score: 228.9 bits;  conditional E-value: 1.9e-71
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.............................. CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.............................. 69 
                 ye+++++GeG++GkV+k ++k+t++ vA+Kk++ +++k+    + +rEik+l++++h+ni  l e++ e                              
  CCD25012.1 237 YEQISQVGEGTYGKVFKSKNKNTKQLVALKKLRLNSEKDGFPITSIREIKLLQSFNHENIAVLREIMVEsissssansspsmssssssnsgqsnllngs 335
                 7899***************************************************************999***************************** PP

                 .....SSEEEEEEE--TTEBHHHHHH.HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS......... CS
     Pkinase  70 .....kdelylvleyveggeladlle.rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk......... 153
                       +++y++++y++++ l+ ll+ ++ +++++++k+++kq+l+g++ylH+  i+HrD+K +NiL+d+ g+lKitDFGla+++  +s+         
  CCD25012.1 336 snigiINSIYMIFQYADND-LTGLLNdKNLQIKPSQCKHLLKQLLHGVQYLHDSFILHRDIKGSNILVDNLGNLKITDFGLARKILPHSPsdkkdiind 433
                 *****9***********87.99999956666******************************************************99998999****** PP

                 BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS................. CS
     Pkinase 154 ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei................. 233
                 +t++v+t +Y++PE+l ++++ys++vD+W++G+il+el+++  +f+   g +    e++ql++i+kilg +t e++p+  ++                 
  CCD25012.1 434 YTNRVITLWYRPPELLmGTTNYSTEVDMWGCGCILIELFNKVAIFQ---GMN----EIEQLVSIFKILGsPTLENFPNFFSMpwffmiipllnekyndc 525
                 ****************999***************************...555....899*********9866777777777799999************ PP

                 ..........-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 ..........seeakdllkkllkkdpkkRltaeellqhpyl 264
                           see+++l++ ll +d++kRl+a+e+lq++y+
  CCD25012.1 526 feekfknilpSEECLKLVRGLLLYDQSKRLSAHEALQSQYF 566
                 ***************************************98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   2.4e-08   8.7e-05       4      71 ..     240     304 ..     237     310 .. 0.87
   2 !   70.5   0.0   3.6e-23   1.3e-19      74     202 ..     342     475 ..     326     495 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.4e-08
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEE CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvct 71 
                   +++GeG++GkV++ + k    ++++ Va+K+l+ +++++      ++e+k++++++h+ni  l  +++
   CCD25012.1 240 ISQVGEGTYGKVFKSKNK----NTKQLVALKKLRLNSEKDGfPITSIREIKLLQSFNHENIAVLREIMV 304
                  6799**********9999....999********988887765778899*************98877766 PP

  == domain 2  score: 70.5 bits;  conditional E-value: 3.6e-23
                  SSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET.....TTSSEE.EETTSS CS
  Pkinase_Tyr  74 epllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi.....ekddey.vkkeea 165
                  ++++++++y+++ dL   L++k + +++ ++  ++  q+ +G++yL++  ++Hrd+   N+L+++    ki+DfGLar+i     +++++  ++ +++
   CCD25012.1 342 NSIYMIFQYADN-DLTGLLNDK-NLQIKPSQCKHLLKQLLHGVQYLHDSFILHRDIKGSNILVDNLGNLKITDFGLARKIlphspSDKKDIiNDYTNR 437
                  4699****9875.9*******9.********************************************************9654322223332344445 PP

                  TSGGGGS-HHHHHHSE.EEHHHHHHHHHHHHHHHHTTS CS
  Pkinase_Tyr 166 klpvkWmapEslkekk.ftsksDvWsfGvllwEiftlg 202
                   + + + +pE l+ ++ ++++ D+W  G +l+E+f++ 
   CCD25012.1 438 VITLWYRPPELLMGTTnYSTEVDMWGCGCILIELFNKV 475
                  55555569**9987666******************854 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.24   8.8e+02      41      66 ..     202     227 ..     197     242 .. 0.82
   2 !   19.0   0.0   1.9e-07    0.0007     143     240 ..     369     468 ..     237     554 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.24
  Kinase-like  41 avkvfllpseaskkdlerlkeqelai 66 
                   + v++++s+  kk+l rl++ +l+ 
   CCD25012.1 202 SIPVPSTTSRDHKKKLYRLHRHQLLF 227
                  577999*************9999875 PP

  == domain 2  score: 19.0 bits;  conditional E-value: 1.9e-07
  Kinase-like 143 tiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve............kgfaPpEllgsrggytrknktkmt 228
                    +++ll  ql+  +++L++  ++h +++  n+l d+ g l++++f+  ++   + + s  +              + PpEll          +t+++
   CCD25012.1 369 SQCKHLL-KQLLHGVQYLHDSFILHRDIKGSNILVDNLGNLKITDFGLARKILPHSP-SDKKdiindytnrvitLWYRPPELLMG--------TTNYS 456
                  4689999.8999**********************************98777655555.333335555557776667999999876........78999 PP

  Kinase-like 229 hkldaWqlGlvi 240
                   ++d W+ G   
   CCD25012.1 457 TEVDMWGCGCIL 468
                  999999998755 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.013        45      57      82 ..     280     305 ..     264     312 .. 0.90
   2 ?    7.9   0.1   0.00047       1.7     104     182 ..     354     429 ..     351     434 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.013
         Kdo  57 ravrEfrllkrLeeagvavpkpvaag 82 
                 ++ rE++ll+ ++++ +av++ ++ +
  CCD25012.1 280 TSIREIKLLQSFNHENIAVLREIMVE 305
                 899******************99875 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00047
         Kdo 104 dLedllakwae.laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwrekd 182
                 dL+ ll++ +  ++ +  ++llk++   ++ lh+  + H+d+   nil+++ +    ++ + D+  ar+ l+     +kd
  CCD25012.1 354 DLTGLLNDKNLqIKPSQCKHLLKQLLHGVQYLHDSFILHRDIKGSNILVDNLG----NLKITDFGLARKILPHSPSDKKD 429
                 66777776444677888899999***************************999....77888888888888766655555 PP

>> DUF2441  Protein of unknown function (DUF2441)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0096        34      63     107 ..     222     266 ..     208     276 .. 0.85
   2 ?    7.9   0.5    0.0008       2.9      14      72 ..     256     317 ..     248     321 .. 0.69
   3 ?   -1.4   0.0      0.61   2.2e+03      21      50 ..     352     381 ..     348     390 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0096
                 HHHH-TTS--TTT-EEEBSSHHHHHHHHHHHHHTT----EEEEEE CS
     DUF2441  63 rkeyfpelPsrlkClyvakskeeileWkelfksinrkvlqivkLe 107
                 r +  +   +r + +y   s+ +   + ++fks n+++ q+v L+
  CCD25012.1 222 RHQLLFLTQTRTSSIYEQISQVGEGTYGKVFKSKNKNTKQLVALK 266
                 6677777788999999999999999999*************9887 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0008
                 -TTS--HHHH.....HHHHEETTEEEEEH.HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTS-- CS
     DUF2441  14 nksgkdanqi.....LldlikneeLvfdn.edakvvldtvnddarvireliveevrkeyfpelPs 72 
                 n   k+++q+     L    +++ + + +  ++k++ +  ++++ v+re++ve +        Ps
  CCD25012.1 256 N---KNTKQLvalkkLRLNSEKDGFPITSiREIKLLQSFNHENIAVLREIMVESISSSSANSSPS 317
                 2...3333333323355566677777877788899888888999***********9988888887 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.61
                 HHHHHHHEETTEEEEEHHHHHHHHHHHHHH CS
     DUF2441  21 nqiLldlikneeLvfdnedakvvldtvndd 50 
                 ++ L+ l ++++L+++ ++ k +l+++ + 
  CCD25012.1 352 DNDLTGLLNDKNLQIKPSQCKHLLKQLLHG 381
                 45578889999****999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1722  (0.0960455); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 4007.01
//
Query:       CCD25013.1  [L=69]
Description: hypothetical protein NDAI_0E01970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-20   71.0   3.5    9.2e-20   70.7   3.5    1.1  1  DASH_Hsk3       DASH complex subunit Hsk3 like
     0.0035   17.1   0.3     0.0049   16.6   0.3    1.2  1  Synaptonemal_3  Synaptonemal complex central element protein 
  ------ inclusion threshold ------
      0.016   14.7   0.4      0.016   14.6   0.4    1.1  1  DUF4618         Domain of unknown function (DUF4618)
       0.11   12.5   3.4       0.13   12.2   3.4    1.1  1  FlxA            FlxA-like protein
       0.15   12.5   1.9        0.2   12.2   1.9    1.1  1  UPF0449         Uncharacterised protein family UPF0449


Domain annotation for each model (and alignments):
>> DASH_Hsk3  DASH complex subunit Hsk3 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   3.5   2.6e-23   9.2e-20       1      45 []       6      52 ..       6      52 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 2.6e-23
   DASH_Hsk3  1 qRqyshLasqLaqLqaNLadteellevtseQaes..irkLGklhasl 45
                qRqy+hLa+qL+ L++NL++t+e+l+++s+Q+++  ++++Gk+h s+
  CCD25013.1  6 QRQYAHLAQQLKLLNQNLEKTTEELNIMSSQCNKniVGQIGKIHSSW 52
                8*********************************************9 PP

>> Synaptonemal_3  Synaptonemal complex central element protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   1.4e-06    0.0049       7      38 ..       5      36 ..       2      42 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1.4e-06
  Synaptonemal_3  7 eerqyedfskeslqlnkdleklteqmedvsvk 38
                    ++rqy+ +++++  ln++lek te+++ +s +
      CCD25013.1  5 KQRQYAHLAQQLKLLNQNLEKTTEELNIMSSQ 36
                    6899**********************988876 PP

>> DUF4618  Domain of unknown function (DUF4618)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.4   4.5e-06     0.016      78     109 ..       4      35 ..       1      49 [. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.5e-06
     DUF4618  78 keekklekLeqqleqlnakvqklqeelnvLst 109
                 + +++ ++L+qql+ ln++++k+ eeln++s+
  CCD25013.1   4 TKQRQYAHLAQQLKLLNQNLEKTTEELNIMSS 35 
                 5678899**********************987 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.4   3.7e-05      0.13      23      62 ..       6      49 ..       4      51 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.7e-05
        FlxA 23 qkQiknlqkqLkelsesdeltkeekk....kqqqliqaQIqqlq 62
                q+Q++ l +qLk l ++ e+t+ee +    +  + i  QI ++ 
  CCD25013.1  6 QRQYAHLAQQLKLLNQNLEKTTEELNimssQCNKNIVGQIGKIH 49
                79***************999999998778788888888887775 PP

>> UPF0449  Uncharacterised protein family UPF0449
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.9   5.5e-05       0.2      63      99 ..       5      41 ..       4      43 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.5e-05
     UPF0449 63 qvrtylelnerLeeakeeLkqkceeLktageeLeeei 99
                + r+y +l ++L+  +++L++ +eeL+ ++++ +++i
  CCD25013.1  5 KQRQYAHLAQQLKLLNQNLEKTTEELNIMSSQCNKNI 41
                6799************************999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1251  (0.0697752); expected 358.6 (0.02)
Passed bias filter:                      702  (0.0391544); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 529.44
//
Query:       CCD25014.1  [L=133]
Description: hypothetical protein NDAI_0E01980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-43  146.7   7.4    1.7e-42  144.0   7.4    1.8  1  L31       Mitochondrial ribosomal protein L31


Domain annotation for each model (and alignments):
>> L31  Mitochondrial ribosomal protein L31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   7.4   9.3e-47   1.7e-42       2     102 .]      10     133 .]       9     133 .] 0.92

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 9.3e-47
         L31   2 vllgGllwKipwrlsktqkarqrkRlkavDevieavkeslkkkgvslkale.......................kakaelpkesemspkdKYtvFskks 77 
                 + lgGllwKipwrls++qk+rqr+Rlk+vDevi++++++l+++  + k +e                       ++++ +pke +ms+kdKYtvF+kk 
  CCD25014.1  10 PSLGGLLWKIPWRLSSHQKYRQRNRLKHVDEVIKQITTGLHVMRCEDKGIEykkaismpkkqmfkprmaslrllNKSSFFPKEFQMSSKDKYTVFDKKV 108
                 679***************************************9666666666666679999999999999999999999******************** PP

         L31  78 kgYRKsihkvpkwtklslrenpkgf 102
                 kgYRK+ihkvpkwtk+s+r+npk+f
  CCD25014.1 109 KGYRKGIHKVPKWTKISMRQNPKFF 133
                 ***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1066.73
//
Query:       CCD25015.1  [L=112]
Description: hypothetical protein NDAI_0E01990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-19   68.6   3.0    4.5e-19   68.2   3.0    1.1  1  Cmc1      Cytochrome c oxidase biogenesis protein Cmc1 like
  ------ inclusion threshold ------
       0.54   10.3   5.1        2.6    8.1   0.4    2.1  2  CX9C      CHCH-CHCH-like Cx9C, IMS import disulfide relay-sys
        1.5    9.2   5.8         25    5.3   3.5    2.5  3  DUF3128   Protein of unknown function (DUF3128)


Domain annotation for each model (and alignments):
>> Cmc1  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   3.0   7.5e-23   4.5e-19       2      68 ..      34     100 ..      33     101 .. 0.97

  Alignments for each domain:
  == domain 1  score: 68.2 bits;  conditional E-value: 7.5e-23
        Cmc1   2 hkklkkkarkeCaelikalaeChkdrllkvvgkCneekeamkkClkeyrtderlkdaekdriiekrl 68 
                 +k+lk+  +++C+e++ka+a+C+k +++kv+++C+ ek +mk+Cl  y++d +  d e+d+ i +r+
  CCD25015.1  34 RKNLKAFTYQQCHEYVKAMADCAKLNGIKVFPNCDPEKAKMKNCLLFYQNDSKYLDDERDKLILERI 100
                 89*************************************************************9998 PP

>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.4   0.00044       2.6      26      41 ..      42      57 ..      34      60 .. 0.86
   2 ?    7.3   4.9   0.00077       4.6       5      39 ..      42      77 ..      40      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00044
        CX9C 26 pekCkeqkkeLakCik 41
                +++C+e+ k++a C+k
  CCD25015.1 42 YQQCHEYVKAMADCAK 57
                79************98 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00077
        CX9C  5 akyCpkefeaYhkCvssn.qswpekCkeqkkeLakC 39
                 ++C++ ++a  +C   n  +   +C ++k ++ +C
  CCD25015.1 42 YQQCHEYVKAMADCAKLNgIKVFPNCDPEKAKMKNC 77
                689999999999999999888999999999999999 PP

>> DUF3128  Protein of unknown function (DUF3128)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.9   1.1e+04      68      77 ..      16      24 ..       6      25 .. 0.58
   2 ?    4.4   0.2    0.0081        48      29      47 ..      41      59 ..      38      63 .. 0.86
   3 ?    5.3   3.5    0.0041        25      29      55 ..      63      89 ..      44     112 .] 0.67

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.9
     DUF3128 68 kkkssedvWe 77
                + +s+ ++W 
  CCD25015.1 16 H-NSKVPIWA 24
                2.56667885 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0081
     DUF3128 29 eldnCsekwedfkfClklk 47
                ++++C+e  +++ +C kl+
  CCD25015.1 41 TYQQCHEYVKAMADCAKLN 59
                5789999999999999875 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0041
     DUF3128 29 eldnCsekwedfkfClklktkksekiq 55
                ++ nC+ ++ ++k+Cl   +++s+  +
  CCD25015.1 63 VFPNCDPEKAKMKNCLLFYQNDSKYLD 89
                578999999999999998854444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 986.99
//
Query:       CCD25016.1  [L=725]
Description: hypothetical protein NDAI_0E02000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-128  430.2  15.4   1.3e-128  429.9  15.4    1.1  1  Adaptin_N        Adaptin N terminal region
    5.4e-55  185.9  12.2    3.3e-53  180.1   4.4    3.3  3  Cnd1             non-SMC mitotic condensation complex subunit
    9.5e-14   51.6   0.1      1e-05   25.8   0.1    5.7  5  HEAT_2           HEAT repeats
    2.3e-07   30.5   4.0      0.046   14.0   0.0    5.3  5  HEAT             HEAT repeat
  ------ inclusion threshold ------
      0.016   15.7   0.4        1.8    9.2   0.0    4.3  6  HEAT_EZ          HEAT-like repeat
      0.027   14.6   6.1       0.69   10.1   0.1    5.0  4  RTP1_C1          Required for nuclear transport of RNA pol II
      0.028   14.0   1.5          3    7.3   0.0    3.5  3  CLASP_N          CLASP N terminal
      0.052   13.6   1.9       0.42   10.6   0.1    3.2  3  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
       0.18   11.9   1.0         31    4.7   0.0    3.2  3  TAN              Telomere-length maintenance and DNA damage r
       0.37   10.9   1.4         14    5.9   0.1    4.0  4  Arm              Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  429.9  15.4  7.1e-132  1.3e-128       3     523 ..      25     553 ..      23     554 .. 0.96

  Alignments for each domain:
  == domain 1  score: 429.9 bits;  conditional E-value: 7.1e-132
                 HHCCHHHHHHCCSSS-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCCSSSHHHHHHHHH CS
   Adaptin_N   3 kriqqelaeilnsnkdddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlkdpnqlirglALr 101
                 k +  el++ l s+  +++++k+a+kk i++++ G+dvs lf++v+k++a++d+e+K+lvYly++++ae++++l++L++n++  D++dpn+lir++A+r
  CCD25016.1  25 KGELAELRTGLVSQ--YPQTRKDAIKKTIQQMTVGKDVSTLFPDVLKNMATNDIEQKKLVYLYVMNYAETHPELCILAVNTFVTDAQDPNPLIRCMAIR 121
                 66778899999999..*********************************************************************************** PP

                 HHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCC.HHHHHHHCTT-SSHHHHHHHHHHHHHHHCCCCCCC...HHHHHHHCC CS
   Adaptin_N 102 vLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkq.lveeikellsdkdpgvvlaAvalleeikkndrlll...kllpklvrr 196
                 ++s+irv++++e+++  ++++l+d++pyvrk+A+++++kl++++++l+ +  ++e++k++l+d++p+vv++A+a l ei+  d + +   +l++++v++
  CCD25016.1 122 TMSMIRVEKILEYIEIPLRRTLQDDNPYVRKTAVICVAKLFQLNKELCIELgVLEDLKSSLDDENPMVVANATASLAEINDMDPSIVdlkSLIQLHVKQ 220
                 ************************************************9999***************************55555545899********* PP

                 HHHHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCGCSSCHHHHHHHHHCCHCCCCST......HHHCCHHCHHHHHHSSCCTCHHHHHC CS
   Adaptin_N 197 LcnllteldpwlqvkiiklltrlarqepeerskkellesllnllqssnnaVlletvnlivelapkne......livlavnaLvrllsskdenlryvaLr 289
                 +  +l+e+++w+ ++i+  l+++++++  e+  ++++++++++lq++n+aV+l+t++++++  p+++      +++++ +aLv+l+ss++e ++yvaL+
  CCD25016.1 221 FLAVLNECTEWARITILGALSEYSARDGLEA--QDIIDRVTAHLQHVNPAVVLATIKVVIKNLPQTDfnpnslIMKKLSSALVSLMSSPPE-MQYVALK 316
                 *******************************..99*************************88888888888989*****************.******* PP

                 HHHHHHHHXXTTTTTTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHH...HHHHHHHHTTSSXXHHHHHHHHHHHHHHHHHS..CCHHHHHHHHHH CS
   Adaptin_N 290 tllkivkkepkavqhldlkifllktdddvsirlkaldlllklvdesNvke...ivkeLkkyvkevadedfksklvkaIgrlaekf..atdaewvldvll 383
                 ++  i++k  +++ +++l+if++k +d+ +++l+++d+l++lvd+ N+k+   +++eLk+y +e  +++f+s++++ +++l++kf  ++  ++vld+l+
  CCD25016.1 317 NIRIILEKY-PEILSKELRIFYIKFNDPLYVKLEKIDILIRLVDKGNLKQcslLLTELKEYSMEF-EPEFVSRAIQGLSQLGIKFsgEKFLQKVLDILI 413
                 *********.******************************************9********9888.********************99999******** PP

                 HHHTTXXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCGXXSHH.......HHHHHHHHHHHTTTTXTT...HHHHHHCTTTTTTTSXHHHHHHHH CS
   Adaptin_N 384 ellslsgesvkdeivevirdliqkvpelheeiiekLaellekiesee.......araaaiWllGeygelvsntesasdllrslaekfvlesekvklqil 475
                 el+  +++s+kd+++ ++++++++ pe+ + ++++++  l+++es+        a+++++WllG+y e+++    ++  ++ ++e f +e+  ++ +il
  CCD25016.1 414 ELIDRDQNSIKDDCCIAMCNILRHLPENTD-MASQICSILNAWESPDeylrtdvAKCNYVWLLGQYPENFPS---LKAKVNIFLELFNQEESLTQTSIL 508
                 ****************************65.9**********9999999999999****************8...************************ PP

                 HHHHHHHHCXGCC.THXHHHHHHHHHHH.XXSHHHHHHHHHHHHHHCCX CS
   Adaptin_N 476 talvKlyltspdketqekliqlvlslat.ssdlevrdRaveylqllssa 523
                  + v+l+   p     + l++++++ ++ +++l+vrd+a++y+++ls++
  CCD25016.1 509 ITVVRLHSKLPG----STLQSVLEKATKeTTELDVRDMAIMYWRCLSMD 553
                 *******99993....4556666666668889**************986 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.41   7.3e+02      56     124 ..      24      87 ..      19      97 .. 0.67
   2 !  180.1   4.4   1.8e-56   3.3e-53       1     162 []     114     279 ..     114     279 .. 0.95
   3 !    8.4   0.4    0.0012       2.1      36     139 ..     345     450 ..     322     457 .. 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.41
        Cnd1  56 ekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqitilefLl 124
                 +kg l+el++ l  + p+ ++ a+    +  + + + + +l+pd+++++ +  n++++++ ++   +++
  CCD25016.1  24 DKGELAELRTGLVSQYPQTRKDAIKKTIQQMTVG-KDVSTLFPDVLKNMAT--NDIEQKKLVY--LYVM 87 
                 6677777777777777777777766555555555.89999*******9994..4555555444..4444 PP

  == domain 2  score: 180.1 bits;  conditional E-value: 1.8e-56
        Cnd1   1 liRalairtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteiseksenai..yn 95 
                 liR++airt+++irv++++ey+  pLr++L+D++pyVRkta+i+vakL  +++++++e g+l++l++ l+Denp+Vvana a+l ei++++++++   +
  CCD25016.1 114 LIRCMAIRTMSMIRVEKILEYIEIPLRRTLQDDNPYVRKTAVICVAKLfqLNKELCIELGVLEDLKSSLDDENPMVVANATASLAEINDMDPSIVdlKS 212
                 7*****************************************************************************************987653244 PP

        Cnd1  96 llpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcprlqhansavvlaaikviLs 162
                 l +  ++++++ lnec+ew++itil +L++y ++d  ea++++++++++lqh+n+avvla+ikv+++
  CCD25016.1 213 LIQLHVKQFLAVLNECTEWARITILGALSEYSARDGLEAQDIIDRVTAHLQHVNPAVVLATIKVVIK 279
                 555678888889****************************************************985 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0012
        Cnd1  36 yVRktaaivvakLilndmvkekg.flselaklleDenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLlsyipkdkq 132
                 yV+   + ++++L++++  k+   +l el++   + +p+ v+ a+  l+++  k s++++++ + di+  l d+ ++  +++ +  +  +l++ p+++ 
  CCD25016.1 345 YVKLEKIDILIRLVDKGNLKQCSlLLTELKEYSMEFEPEFVSRAIQGLSQLGIKfSGEKFLQKVLDILIELIDRDQNSIKDDCCIAMCNILRHLPENTD 443
                 777777778899999998898888999999999*********************999****************9999999******************9 PP

        Cnd1 133 eaeslve 139
                  a +++ 
  CCD25016.1 444 MASQICS 450
                 9999886 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0     4e-07   0.00072       8      57 ..     108     160 ..     101     168 .. 0.81
   2 !   25.8   0.1   5.7e-09     1e-05       4      62 ..     139     206 ..     136     217 .. 0.79
   3 ?    3.9   0.0     0.039        70       3      55 ..     220     277 ..     218     313 .. 0.79
   4 ?    3.8   0.0     0.043        78      45      77 ..     382     422 ..     353     432 .. 0.80
   5 ?    2.8   0.0     0.084   1.5e+02      17      85 ..     468     545 ..     445     548 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4e-07
      HEAT_2   8 lendpdpevrraairaLgrignpea....lpaLvellededpavRraaaeaLga 57 
                 + +dp+p +r +air++  i+ +++       L++ l+d++p+vR++a+   ++
  CCD25016.1 108 A-QDPNPLIRCMAIRTMSMIRVEKIleyiEIPLRRTLQDDNPYVRKTAVICVAK 160
                 4.79**************9999977333344578899***********998876 PP

  == domain 2  score: 25.8 bits;  conditional E-value: 5.7e-09
      HEAT_2   4 LlqalendpdpevrraairaLg...rignp.....ealpaLvellededpavRraaaeaLgaigd..pe 62 
                 L   l +d +p+vr++a+++ +   +++ +      +l+ L + l+de+p+v ++a  +L++i d  p+
  CCD25016.1 139 LRRTL-QDDNPYVRKTAVICVAklfQLNKElcielGVLEDLKSSLDDENPMVVANATASLAEINDmdPS 206
                 55567.8***************887555556666688**************************964243 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.039
      HEAT_2   3 aLlqalendpdpevrraairaLg......rignpealpaLvellededpavRraaaeaL 55 
                 ++l++l n   +  r++++ aL        +  +++++ ++  l++ +pav  a ++  
  CCD25016.1 220 QFLAVL-NECTEWARITILGALSeysardGLEAQDIIDRVTAHLQHVNPAVVLATIKVV 277
                 667777.55556689999999996555444555699******************99975 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.043
      HEAT_2  45 pavRraaaeaLgaig........dpealpaLkelldddddd 77 
                 p+    a++ L+++g        ++++l++L el d+d+++
  CCD25016.1 382 PEFVSRAIQGLSQLGikfsgekfLQKVLDILIELIDRDQNS 422
                 67778899999988777776666688999999999888876 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.084
      HEAT_2  17 rraairaLgrignp....ea.lpaLvellededpavRraaaeaLgaigd....pealpaLkellddddddvvReaAae 85 
                 + + ++ Lg++ +     +a +++++el + e++ ++  +  + +++ +    +   ++L+++ +++++ +vR  A+ 
  CCD25016.1 468 KCNYVWLLGQYPENfpslKAkVNIFLELFNQEESLTQTSILITVVRLHSklpgSTLQSVLEKATKETTELDVRDMAIM 545
                 457788888554433333556899999998888888888888887775333225567999999999999999999885 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0055       9.9       9      25 ..     108     124 ..     101     126 .. 0.80
   2 !   14.0   0.0   2.6e-05     0.046       6      28 ..     140     162 ..     137     164 .. 0.87
   3 !    6.3   0.0    0.0076        14       6      27 ..     179     200 ..     174     202 .. 0.87
   4 ?   -0.9   0.0       1.6   2.8e+03       1      22 [.     254     275 ..     254     278 .. 0.83
   5 ?   -2.3   0.1       4.3   7.7e+03       2      30 ..     409     437 ..     408     438 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0055
                 HT-SSHHHHHHHHHHHH CS
        HEAT   9 lsDpspeVReaAakaLg 25 
                  +Dp+p +R++A++++ 
  CCD25016.1 108 AQDPNPLIRCMAIRTMS 124
                 69***********9876 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.6e-05
                 HHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgala 28 
                  + l+D++p VR++A+ ++++l 
  CCD25016.1 140 RRTLQDDNPYVRKTAVICVAKLF 162
                 5679***************9986 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0076
                 HHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   6 lkllsDpspeVReaAakaLgal 27 
                  + l D++p V ++A  +L+++
  CCD25016.1 179 KSSLDDENPMVVANATASLAEI 200
                 5679***************987 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 1.6
                 HHHHHHHHHT-SSHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAak 22 
                 +++ +   l++ +p V  a++k
  CCD25016.1 254 IIDRVTAHLQHVNPAVVLATIK 275
                 567788899*******999887 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 4.3
                 HHHHHHHHT-.SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsD.pspeVReaAakaLgalaev 30 
                 l++l++l+ D +  ++ + ++ a+++++++
  CCD25016.1 409 LDILIELI-DrDQNSIKDDCCIAMCNILRH 437
                 67778854.523333677777777777765 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.7   3.1e+03      38      52 ..     109     123 ..     108     126 .. 0.85
   2 ?    9.2   0.0     0.001       1.8      33      54 ..     139     160 ..     128     161 .. 0.88
   3 ?   -2.5   0.0       4.4   7.9e+03      36      53 ..     181     198 ..     180     200 .. 0.76
   4 ?    0.0   0.1      0.74   1.3e+03      20      53 ..     212     241 ..     187     243 .. 0.66
   5 ?   -4.1   0.1        10   1.8e+04      31      41 ..     298     308 ..     293     310 .. 0.67
   6 ?   -1.4   0.0         2   3.6e+03      24      51 ..     403     430 ..     399     431 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.7
     HEAT_EZ  38 nddsdeVRaaAagaL 52 
                 +d+++++R+ A+++ 
  CCD25016.1 109 QDPNPLIRCMAIRTM 123
                 6999*******9985 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.001
     HEAT_EZ  33 LlalLnddsdeVRaaAagaLgn 54 
                 L ++L+dd++ VR++A+++ ++
  CCD25016.1 139 LRRTLQDDNPYVRKTAVICVAK 160
                 7799*************99776 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 4.4
     HEAT_EZ  36 lLnddsdeVRaaAagaLg 53 
                  L d++++V a+A   L+
  CCD25016.1 181 SLDDENPMVVANATASLA 198
                 588999999888877766 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.74
     HEAT_EZ  20 ellqplvpeilpaLlalLnddsdeV.RaaAagaLg 53 
                  l+q++v++ l+ L      ++ e  R + +gaL+
  CCD25016.1 212 SLIQLHVKQFLAVLN-----ECTEWaRITILGALS 241
                 458888888888887.....777666777777777 PP

  == domain 5  score: -4.1 bits;  conditional E-value: 10
     HEAT_EZ  31 paLlalLndds 41 
                  aL++l+++++
  CCD25016.1 298 SALVSLMSSPP 308
                 57887776665 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 2
     HEAT_EZ  24 plvpeilpaLlalLnddsdeVRaaAaga 51 
                 ++++++l+ L+ l   d+ +++  +++a
  CCD25016.1 403 KFLQKVLDILIELIDRDQNSIKDDCCIA 430
                 688999999**99988888999999987 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.1   0.00039      0.69       6      75 ..     141     208 ..     101     230 .. 0.85
   2 ?   -1.9   0.0         2   3.6e+03      28      64 ..     241     277 ..     207     281 .. 0.75
   3 ?    1.6   0.3      0.17     3e+02       5      85 ..     300     375 ..     296     428 .. 0.57
   4 ?    0.3   0.0      0.44   7.8e+02      40      95 ..     487     540 ..     474     544 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00039
     RTP1_C1   6 kdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeev 75 
                 + lqd+ + vr  +++  +kl++ ++  ++     +l+ l+++L de++ v  na   L+++ d++p+ v
  CCD25016.1 141 RTLQDDNPYVRKTAVICVAKLFQLNK--ELCIELGVLEDLKSSLDDENPMVVANATASLAEINDMDPSIV 208
                 46899999999999999999999988..777788899999999999999999999999999999888755 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
     RTP1_C1  28 ekkskeavldiekilkllleaLkdedsYvYLnaikgL 64 
                 ++ s+ + l+++ i++ +  +L++ ++ v L+ ik++
  CCD25016.1 241 SEYSARDGLEAQDIIDRVTAHLQHVNPAVVLATIKVV 277
                 4444556777888888888888888888888888765 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.17
     RTP1_C1   5 lkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleeyee 85 
                 l +l ++ + ++  +l  +r ++ek      + ++k l+++    +d+  Yv L+ i +L  L+d+ + + ++lLl e +e
  CCD25016.1 300 LVSLMSSPPEMQYVALKNIRIILEKYP----EILSKELRIFYIKFNDP-LYVKLEKIDILIRLVDKGNLKQCSLLLTELKE 375
                 555555666666666666665555553....22222234443333333.46666666666666666666666666555533 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.44
     RTP1_C1  40 kilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleeyeeenekeslder 95 
                 + ++++le  ++e+s    +   ++v L ++ p ++l+ +le+   ++e+++ld r
  CCD25016.1 487 AKVNIFLELFNQEESLTQTSILITVVRLHSKLPGSTLQSVLEKA--TKETTELDVR 540
                 5578999999999999999999999**************99998..6666677665 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0017         3     166     206 ..     124     164 ..      27     185 .. 0.86
   2 ?    1.1   0.1      0.13   2.4e+02      89     137 ..     402     451 ..     385     454 .. 0.88
   3 ?    2.2   0.0     0.064   1.1e+02      75     103 ..     557     585 ..     545     593 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0017
     CLASP_N 166 skleasllldliekslkkgleDanptVRetaRstfweffkv 206
                 s +  +++l+ ie  l++ l+D np VR+ta  ++ ++f+ 
  CCD25016.1 124 SMIRVEKILEYIEIPLRRTLQDDNPYVRKTAVICVAKLFQL 164
                 44555678899999*****************9999999875 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.13
     CLASP_N  89 dpmveillptLlkllgdtKkiisqnanqalaallsnasfspri.lqvlsv 137
                 +++++++l++L++l+    + i     +a++ +l++++ ++++  q++s+
  CCD25016.1 402 EKFLQKVLDILIELIDRDQNSIKDDCCIAMCNILRHLPENTDMaSQICSI 451
                 5688999*******************************999997777765 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.064
     CLASP_N  75 hllkelaiqlkeqldpmveillptLlkll 103
                 +l++el+++  ++l+  ++++ p Ll+ l
  CCD25016.1 557 ELVEELCKIIPPHLETTIDQFSPDLLEKL 585
                 79**********************99875 PP

>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00024      0.42      36      62 ..     142     167 ..     123     185 .. 0.83
   2 ?   -2.5   0.0       2.9   5.2e+03      37      52 ..     181     196 ..     172     200 .. 0.80
   3 ?   -0.2   0.2      0.59   1.1e+03      38      69 ..     416     447 ..     399     453 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00024
  Atx10homo_assoc  36 cniDdnnPfirewailairnLlegnee 62 
                      + ++d+nP++r+ a++++ +L + n+e
       CCD25016.1 142 T-LQDDNPYVRKTAVICVAKLFQLNKE 167
                      4.56789***************99987 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.9
  Atx10homo_assoc  37 niDdnnPfirewaila 52 
                      ++Dd+nP++   a+  
       CCD25016.1 181 SLDDENPMVVANATAS 196
                      689****998887765 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.59
  Atx10homo_assoc  38 iDdnnPfirewailairnLlegneenqelvae 69 
                      iD+++  i++ + +a+ n+l + +en ++ ++
       CCD25016.1 416 IDRDQNSIKDDCCIAMCNILRHLPENTDMASQ 447
                      8999999****************999887665 PP

>> TAN  Telomere-length maintenance and DNA damage repair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.023        42      93     143 ..     261     311 ..     251     316 .. 0.86
   2 ?    4.7   0.0     0.017        31      92     135 ..     395     438 ..     383     448 .. 0.77
   3 ?   -3.2   0.0       4.6   8.3e+03       8      29 ..     658     679 ..     656     690 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.023
         TAN  93 avsklkrktlkalldhitqllpgpdgelleplaldyikaLrsllsvpphve 143
                  +++++  +++a ++++++ lp++d +    +++ +++aL sl+s+pp ++
  CCD25016.1 261 HLQHVNPAVVLATIKVVIKNLPQTDFNPNSLIMKKLSSALVSLMSSPPEMQ 311
                 556777788999999999999999999999*****************9765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.017
         TAN  92 kavsklkrktlkalldhitqllpgpdgelleplaldyikaLrsl 135
                  +++  ++k l+ +ld +++l+ ++++++ + +++ ++ +Lr l
  CCD25016.1 395 LGIKFSGEKFLQKVLDILIELIDRDQNSIKDDCCIAMCNILRHL 438
                 34445569**************9888899999998888888876 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.6
         TAN   8 LssskikeRnkaldeLkhllss 29 
                 L s +  ++  ald+L++l++ 
  CCD25016.1 658 LTSVRTNKKYSALDDLDDLFNF 679
                 6777777888999999999975 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.5   2.6e+03      16      33 ..     138     155 ..     138     155 .. 0.91
   2 ?    5.9   0.1     0.008        14       4      38 ..     165     199 ..     163     200 .. 0.92
   3 ?   -1.8   0.0         2   3.6e+03      16      26 ..     299     309 ..     298     311 .. 0.85
   4 ?   -0.2   0.0      0.64   1.2e+03      13      40 ..     408     435 ..     406     436 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
                 HHHHHTTTSSHHHHHHHH CS
         Arm  16 pLvrLLssedeevqeeAa 33 
                 pL r L+++++ v++ A+
  CCD25016.1 138 PLRRTLQDDNPYVRKTAV 155
                 79999*********9996 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.008
                 HHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHH CS
         Arm   4 nkdavieaGavppLvrLLssedeevqeeAawALsN 38 
                 nk++ ie+G+++ L + L++e+++v+ +A++ L+ 
  CCD25016.1 165 NKELCIELGVLEDLKSSLDDENPMVVANATASLAE 199
                 899***************************99875 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 2
                 HHHHHTTTSSH CS
         Arm  16 pLvrLLssede 26 
                 +Lv+L+ss+ e
  CCD25016.1 299 ALVSLMSSPPE 309
                 8******9876 PP

  == domain 4  score: -0.2 bits;  conditional E-value: 0.64
                 HHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm  13 avppLvrLLssedeevqeeAawALsNLa 40 
                 ++++L++L++ +  +++ +++ A++N+ 
  CCD25016.1 408 VLDILIELIDRDQNSIKDDCCIAMCNIL 435
                 8999*****9888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.40
# Mc/sec: 5434.00
//
Query:       CCD25017.1  [L=778]
Description: hypothetical protein NDAI_0E02010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.8e-136  455.5   0.0   4.1e-136  454.9   0.0    1.3  1  Peptidase_M3    Peptidase family M3
  ------ inclusion threshold ------
        0.1   12.2   0.1       0.16   11.6   0.1    1.2  1  Peptidase_M50B  Peptidase M50B-like


Domain annotation for each model (and alignments):
>> Peptidase_M3  Peptidase family M3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  454.9   0.0  4.6e-140  4.1e-136       2     457 ..     294     770 ..     293     771 .. 0.95

  Alignments for each domain:
  == domain 1  score: 454.9 bits;  conditional E-value: 4.6e-140
                   HHC-S-HHHHHHHHHHHCTTTCCSS..THHHHHHHHHHHHHHHHHHHTT-SSHHHHHHTTSTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M3   2 lkespdrelRkeayeashskaaeqrntlensklleellklraelAkllgyesyaelaledkmaknpetvldfleelvkklrpllekelkllkelkkk 98 
                   lk ++d+e+Rk+++ a+h++ +      ++ + l +l+k ra lA ++g+e+ya++a++ kmaknp++v++fl++l++ l+p++ kelk++++l+++
    CCD25017.1 294 LKACTDPEIRKKIWVAMHDCSK------QQIERLTNLVKIRAFLAHTMGRECYAAYAIDGKMAKNPKDVDEFLKSLMDFLKPKAAKELKFISDLIHN 384
                   899*****************55......689****************************************************************99 PP

                   C........CT-S...SS--CCCHHHHHHHHHCCCCS..--CCCCGGG-BHHHHHHCHHHHHHHHHTEEEEEETTS..--SSTT-EEEEEEET.TT- CS
  Peptidase_M3  99 e........lgle...gelqpwDvaYYsekqreekyd..ldqeelkeyfpletvleGllelfeeLfGikfveekdakgevwhedVrkleVvdeilse 182
                   e           +     ++pwD++YY++  r+++    ld+ +l  y+pl++v++Gl+++fe+++Gi+f+++   kge+w++dVr+l+Vv+e  +e
    CCD25017.1 385 EkgekpsddV--DeilTAVRPWDREYYTAIHRNKQKHllLDDYALDVYYPLGNVIQGLSDIFESIYGIRFEPAVAGKGETWSSDVRRLNVVSE--KE 477
                   9888887652..234679**********98887777778*********************************99999****************..** PP

                   EEEEEEEEEEC--TTS-SS-EEEEEE--B...T...............TS-B--EEEEEEEEE--...-BTTS--B--HHHHHHHHHHHHHHHHHHC CS
  Peptidase_M3 183 gligeiylDlyerkgKrggAasfglvksr...e...............dgtrqlpviylllNftk...psskkPsLLtldevetLfHEfGHsmHsll 258
                   glig iy+Dl+ r+gK+++Aa+f++++sr                    +++qlp i+ll+Nf+     s++  +LL l+e+etLfHE+GH++Hs+l
    CCD25017.1 478 GLIGIIYCDLFRRQGKTNNAAHFTICCSRqiyPheddfstiqlgtnvdGTKFQLPIISLLCNFNTrclNSGETICLLALNEIETLFHEMGHAIHSML 574
                   ****************************9665166788999999***5556*************98888889************************* PP

                   --BSSGGGSTT-S-CCCCCHHHHHHHHGGGSHHHHHCC-B-TTT--B--HHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHCTT-TCCGHH....HHH CS
  Peptidase_M3 259 srteysnvsgtnvpidfvElpSqlmEnlltepevlkslskhyetgeaipeelleklikaknvnaalellrqlvfaafdqelHeeaeeeqilkkdlle 355
                   +rt+ +nvsgt++++dfvElpS lmE+++ +++vlk++  hy+tg ++p+ ll++ +++  + + +e+++q+++a++dq+l++++  ++i++ d+++
    CCD25017.1 575 GRTRLQNVSGTRCSTDFVELPSVLMEHFARDTRVLKRIGHHYKTGDRVPATLLNRYLEKARFLKDCETFSQAKMAMLDQRLYDKNIVQNIDSVDVVK 671
                   ******************************************************************************************9999*** PP

                   HHHHHHHCTTSCTTBTTSSGGGC-CCCHTSS-TTTTCHHHHHHHHHHHHHHCCHHCCTT-CCHHHHHHHHTTTTTTSS-HHHHHHCCCSS---SHHH CS
  Peptidase_M3 356 tyaelrkkflglpvapdeasqasFghlfahgYaanYYsylyaevlaldifekffeedplnretGeryrkeiLsrGgskdplellkkflgrepsadal 452
                   +y el+k+  ++ v+++++++a+Fghlf  gY+a+YY+yl+++++a+++++k+fe+dp++r  Ge++++++L++Gg ++p+++++++l ++  a + 
    CCD25017.1 672 IYHELEKEL-EVLVDDESNWCAKFGHLF--GYGATYYCYLFDRAIASKVWKKLFEKDPYSRSGGEKFKNDVLKWGGLREPWNCVADVLDNPDLAHGG 765
                   ******975.5699**************..******************************************************************9 PP

                   HHHCT CS
  Peptidase_M3 453 lkalg 457
                   +ka++
    CCD25017.1 766 EKAMK 770
                   99997 PP

>> Peptidase_M50B  Peptidase M50B-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.8e-05      0.16      19      39 ..     555     575 ..     541     583 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.8e-05
  Peptidase_M50B  19 pfkllvvffHElGHalaalLt 39 
                      ++ ++++fHE+GHa+  +L 
      CCD25017.1 555 ALNEIETLFHEMGHAIHSMLG 575
                     578899**********99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.39
# Mc/sec: 5993.34
//
Query:       CCD25018.1  [L=428]
Description: hypothetical protein NDAI_0E02020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-07   29.3   0.0    2.3e-06   27.7   0.0    1.8  1  Mur_ligase_M  Mur ligase middle domain
  ------ inclusion threshold ------
       0.03   14.6   0.0      0.068   13.4   0.0    1.6  1  Mur_ligase_C  Mur ligase family, glutamate ligase domain


Domain annotation for each model (and alignments):
>> Mur_ligase_M  Mur ligase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   2.6e-10   2.3e-06       1     190 [.      29     246 ..      29     248 .. 0.74

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 2.6e-10
                   EESSS-HHHHHHHHHHHHHCT..EEEEETTC........................................SS-THHHHHHHHHHHHHTT-SEEEEE CS
  Mur_ligase_M   1 vTGtnGKTTtteliaaileka..gkvigtvg........................................ttnneiglpktlaemekkeaeyavlE 55 
                   ++GtnGK ++ +++ +il  +  +kv +                                           + + e+ +  +l+ ++++++++++lE
    CCD25018.1  29 IAGTNGKGSVCSYLSSILGYNqvYKVGKFTSphlikitdsitvnnvpvsdlefnkirtdlksindqfsldcS-EFELLTCTALKYFHQANCKFCILE 124
                   89****************8875533333333779999************************99999999854.4445555566777778******** PP

                   --HCHHHC..TTTCCHCBESEEEE---TSTTHHHH.SSHHHHHHHHHHHHHTSETTCEEEEETTSC...CHHHHHCTCCTCEEEEESSSTSECEEEE CS
  Mur_ligase_M  56 vsshglge..krlegllkpdvavitnispdHldfh.gtlenyaeaKaelferlkeegiavinaddpyakelikklkkakvkvvtfglekeaedlrak 149
                   v+  g  +  + + g  +  +  it i+ dH  f+  +l ++a++Ka ++++ ++  +av+   ++    + + +kk+ ++++   l   + ++  +
    CCD25018.1 125 VGLGGRLDatNVVPG-SSKYACGITKIGLDHESFLgNSLPEIAKEKAGIITEGSK--FAVVDGSND--PSVLEVVKKR-CDAMNCNLMITNGSVDSN 215
                   ***977666455555.44445559**********97789***********87774..888875555..2444444443.566666655555555555 PP

                   EEEEETTEEEEEEEEETTEEEEEEESSCSCHHHHHHHHHHH CS
  Mur_ligase_M 150 nieeksegteiellevkggeleieipllGkhnvyNalaaia 190
                   +ie ks g        ++     ++pl G++++ N+ +ai 
    CCD25018.1 216 KIETKSWGLL------NW----KNLPLNGEYQIFNLRVAIS 246
                   7777666642......33....4799999999999999986 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   7.5e-06     0.068       1      78 [.     273     351 ..     273     357 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.5e-06
                   CTTSSEEEEE.......TTTEEEEEET--SHHHHHHHHHHHHHHSSSSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEE CS
  Mur_ligase_C   1 vkgRlevvge.......adgvtvidDyahnpdslsaalkalreiapdkrlilvfgpggelgertrtfhdefgrlasaladslvvl 78 
                   ++gRl+ +++       + +v ++ D ahn  ++ ++ k lr+++ d +l ++         +++++ ++++ ++ + +d +v++
    CCD25018.1 273 WPGRLQTIKYhykngdqDVTVPLLLDGAHNGSAAVELAKYLRKTFGDDELTFIMAV--T---NGKKLSPLLDPILRS-KDHVVIT 351
                   78999999999999977777899****************************99997..6...788888888888887.7776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3402.00
//
Query:       CCD25019.1  [L=247]
Description: hypothetical protein NDAI_0E02030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-87  290.2  15.7    9.6e-87  289.9  15.7    1.1  1  She2p     RNA binding protein She2p
     0.0078   16.2   0.2      0.018   15.0   0.2    1.6  1  Ist1      Regulator of Vps4 activity in the MVB pathway


Domain annotation for each model (and alignments):
>> She2p  RNA binding protein She2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.9  15.7   1.1e-90   9.6e-87       2     201 .]      27     224 ..      26     224 .. 0.99

  Alignments for each domain:
  == domain 1  score: 289.9 bits;  conditional E-value: 1.1e-90
       She2p   2 eeiielfskYissyielLnkyigllrrvstlrfeRttlikfvkklRflndsllelelseelkkkeeksleelvkllgsffikvleilDlLnyyltqslq 100
                 ++iiel+++Y++++i+lLnk+ig++rrvstlrfeRttlikfvkklRf+n+sl++++++e ++  ++++l+ +v+ +gsf ik+le+lDlL+y++t+slq
  CCD25019.1  27 TSIIELYVEYVTHNIQLLNKFIGHMRRVSTLRFERTTLIKFVKKLRFYNESLQNINIKEYTS--AHDDLSFIVVFFGSFSIKFLETLDLLKYFFTESLQ 123
                 6799*******************************************************999..999******************************** PP

       She2p 101 keiisktLnedlvlseetivaiedtynhfvkftqWliesleiedsllqleviqfalkcAeedevdleetdnillqevipvedeeeyeellkeWseiLke 199
                 kei+sktLn+dl+ls+eti++++ tynhfvkftqW+ies++++++ll+le+i+f+lkcA+ed+++ eetdni+lq+v++vedeeey+ l+++Ws++L+e
  CCD25019.1 124 KEILSKTLNSDLTLSSETILNMDITYNHFVKFTQWMIESINLQNNLLSLEIIEFTLKCAAEDGTSPEETDNIFLQQVATVEDEEEYQYLMDQWSQVLRE 222
                 **************************************************************************************************9 PP

       She2p 200 kl 201
                 k+
  CCD25019.1 223 KV 224
                 95 PP

>> Ist1  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2     2e-06     0.018      35      77 ..       3      46 ..       1      55 [. 0.90

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2e-06
                TT-HHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHTHHHHTT CS
        Ist1 35 ngkeekArirveql.iredillelleilelycelllarlsllek 77
                ++k+++ + +ve+l + ++i+++l  i+ely+e+++ +++ll+k
  CCD25019.1  3 ASKKQQTKRKVESLrVTDEIITSLTSIIELYVEYVTHNIQLLNK 46
                6789999******9678999999******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2082.46
//
Query:       CCD25020.1  [L=1237]
Description: hypothetical protein NDAI_0E02040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.2e-234  778.0  10.2   9.2e-234  777.6  10.2    1.1  1  Myosin_head   Myosin head (motor domain)
    3.7e-45  153.9   0.4    7.9e-45  152.8   0.4    1.6  1  Myosin_TH1    Unconventional myosin tail, actin- and lipid-bi
    2.2e-11   43.2   0.0    4.5e-11   42.2   0.0    1.6  1  SH3_1         SH3 domain
    9.5e-08   31.8   0.0      2e-07   30.8   0.0    1.6  1  SH3_9         Variant SH3 domain
    1.4e-06   27.9   0.0    3.2e-06   26.7   0.0    1.6  1  SH3_2         Variant SH3 domain
  ------ inclusion threshold ------
      0.014   15.4   0.1      0.031   14.2   0.1    1.5  1  RsgA_GTPase   RsgA GTPase
      0.025   14.8   1.9       0.12   12.6   1.9    2.2  1  DUF4047       Domain of unknown function (DUF4047)
      0.027   14.9   0.0      0.095   13.1   0.0    1.9  1  AAA_16        AAA ATPase domain
      0.029   13.9   0.1        9.6    5.7   0.0    2.5  2  Hpr_kinase_C  HPr Serine kinase C-terminal domain
      0.045   14.0   0.0        0.2   11.9   0.0    2.1  1  AAA_22        AAA domain
      0.066   13.1   0.0       0.14   12.1   0.0    1.5  1  NACHT         NACHT domain
       0.85    9.6  14.7        2.4    8.2   6.2    2.8  2  IQ            IQ calmodulin-binding motif


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  777.6  10.2  6.2e-237  9.2e-234       2     677 .]      39     702 ..      38     702 .. 0.97

  Alignments for each domain:
  == domain 1  score: 777.6 bits;  conditional E-value: 6.2e-237
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSHH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklkiysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGKt 99 
                   dl+ Ls+++++s+ enlkkR+++ +iYty+g+vl++vnP++ l iy++ ++++ykgk+r e+pPH+faia+++y +l++++e+q+++isGEsGAGKt
   CCD25020.1  39 SDLTLLSKISDESINENLKKRFMNATIYTYIGHVLISVNPFRDLGIYTDAILDSYKGKNRLEVPPHVFAIAESMYYNLKSYNESQCVIISGESGAGKT 136
                  79************************************************************************************************ PP

                  HHHHHHHHHHHHHSSSSSCTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---TT--SBHHHHHH CS
  Myosin_head 100 eatKkvlqylasvaeskekveeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqakeERnyHiFYql 197
                  ea+K+++qy+as + s++  + +++++++l++nP+lE+fG Akt+rn+nssR GK++ei+f+++ ++ +++i++YLLEk Rvv q k+ERn+HiFYq+
   CCD25020.1 137 EAAKRIMQYIASASTSHS-ESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQF 233
                  *************99999.578**************************************************************************** PP

                  HHCSTHHHHHHTT--TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEESSHHHHHHHHHH CS
  Myosin_head 198 lagaseeekkelkledvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqavledeeklekaael 295
                   +gas+  ++++ ++++++y y+s sg+++vd+idd ++++et ka++++gl +eeq +ifr++aail +Gni+f ++++++ a+++d++  + +a l
   CCD25020.1 234 TKGASDTYRQTFGVQKPEQYIYTSASGCTSVDTIDDLKDYQETLKAMQTIGLAQEEQDQIFRMLAAILWIGNISFIENEEGN-AQVRDTSVTDFVAYL 330
                  *****************************************************************************99886.99999999******* PP

                  HTS-HHHHHHHHHSEEEEET.....TEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-S-SEEEEEEEEE-B---SSB-HHHHHHH CS
  Myosin_head 296 lgvdaeelekalvkrriktg.....kevvskalnveqaevardalakaiyerlFdwlverinkslekkkeekksfiGvLDiaGFEifeknsFEqlcin 388
                  l+vda+ l kalv+r ++t       +v++++ln+ qa+  rdalakaiy++lFdw+v r+nksl++ +   ++ iG+LDi+GFEife+nsFEqlcin
   CCD25020.1 331 LQVDAAVLIKALVERIMETShgmrrGSVYHVPLNIVQATAVRDALAKAIYSNLFDWIVGRVNKSLQAYS-GADKSIGILDIYGFEIFEHNSFEQLCIN 427
                  *******************99999899****************************************99.88999*********************** PP

                  HHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHS.SSTSHHHHHHHHHTSTTS....-HHHHHHHHHHHHTTSTTEEETTSTTTT CS
  Myosin_head 389 yvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiek.kplGilslLdeecllpka....tdetfleklvkafskhakfeksrlkkge 481
                  yvnEkLqq+F++l+lk+Eqe Y rE+i+w+ i++ +dn+ ++dLie+ +p Gi++ +++   +++a     d+ f ++l + fs++++fe       +
   CCD25020.1 428 YVNEKLQQIFIQLTLKSEQETYEREKIQWTPIKY-FDNKVVCDLIEArRPPGIFAAMNDSVATAHAdsnaADQAFSQRL-NLFSTNPHFELR-----S 518
                  **********************************.***********999*********999988775555788888887.478999999544.....6 PP

                  TEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCCCCSBHHHHHHHHHHHHHHHHCTSEEE CS
  Myosin_head 482 akFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeekeakaeakksekkkkkkkkkkkfktvgskfkeslaeLmktlestnph 579
                  +kF+ikHyAg+v+Y+v+g  +KnkD+l++dlvel+ ++++ +l+++f+ e                 k++k+++ t+g k+ +s +eL++tl++++p 
   CCD25020.1 519 NKFVIKHYAGDVTYDVNGITDKNKDQLQKDLVELMGTTTNTFLSTIFPME---------------VDKESKRRPPTAGDKIIKSANELVETLSKAQPS 601
                  8***********************************************92...............345667799************************ PP

                  EEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTTSS-SS....SSSHHHHHHHHHHHTTS-GCGEEECSSEE CS
  Myosin_head 580 fvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakkelkkl...lkedakkaveailkeleldkeeykiGktKi 674
                  ++R ikpne+k+++++d+++vl+q+++lG+ e++rirraGf++R++f++fv+r++ll+++        +++++ +a++ il + ++ + ey++G+t +
   CCD25020.1 602 YIRTIKPNETKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQVFDKFVERFYLLSPHCSYAGdytWQGETLDAIKYILADASIPATEYQLGTTSV 699
                  ***********************************************************998777889****************************** PP

                  EET CS
  Myosin_head 675 Ffr 677
                  F++
   CCD25020.1 700 FIK 702
                  *97 PP

>> Myosin_TH1  Unconventional myosin tail, actin- and lipid-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8   0.4   5.3e-48   7.9e-45       1     187 []     760     955 ..     760     955 .. 0.95

  Alignments for each domain:
  == domain 1  score: 152.8 bits;  conditional E-value: 5.3e-48
  Myosin_TH1   1 kvlasellkgkKerrrfsll..rkFegDYLglenesevgkelkkkvgkdqdekvlFssr....vkKlnrssksskrilvlTdkalylldpkkvk..... 88 
                 +++++++l ++Kerr++sll  r+F+gDYL++++ +++g+++k+++g+  +ekv+Fs +    ++K++rs ++ k++++lT++++y+++++ ++     
  CCD25020.1 760 RDYGTKILGDRKERRSMSLLgyRAFMGDYLACNQSKSKGSYIKRQAGI--KEKVIFSIHgemlHSKFGRSAQRLKKTFILTPTTFYIVGQTMIQnamky 856
                 799*****************************777*************..6***************************************999999999 PP

  Myosin_TH1  89 vlkrriplseItsvsvsplqDdlvvlhlke.skgDllleldfktElvtklskaykkktnkklkvkisdtieyklkkkktrtvkfqkd....kgkdsyks 182
                 +++++i++++I++ s+s+lqDd+v + l++   +D+++++ fktEl+t++     kk n+k+++++++ i+y++k++k + v+ + +    k  d yks
  CCD25020.1 857 TQDYSINVNSIKQFSLSTLQDDWVGVVLSNsTLPDPFINTYFKTELITQI-----KKLNSKVQINVGPMIQYQKKPGKLHPVRATISdtapKYGDLYKS 950
                 99**************************985578****************.....9**********************9999999665776669***** PP

  Myosin_TH1 183 ltvsv 187
                 +t+ v
  CCD25020.1 951 STIYV 955
                 *9976 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0     3e-14   4.5e-11       2      48 .]    1109    1156 ..    1108    1156 .. 0.97

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 3e-14
                  ESSSBEXSS.TTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1    2 AlYDYeaee.sdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48  
                  A YD++++  ++EL++kkG+v+ +  ++ +gW  ++  ++ k+G++P+
  CCD25020.1 1109 AAYDFPGSGaPSELPLKKGEVVYITRQEQNGWSLAKTLDGSKTGWVPT 1156
                  99*********************************************6 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.3e-10     2e-07       3      47 ..    1111    1158 ..    1109    1160 .. 0.82

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.3e-10
       SH3_9    3 ypyepredd.eLsLqrGDvitvieesedgWlegs.l.tGrtGlvPany 47  
                  y++    +  eL+L +G+v+++ +++++gW +++ l +++tG+vP +y
  CCD25020.1 1111 YDFPGSGAPsELPLKKGEVVYITRQEQNGWSLAKtLdGSKTGWVPTAY 1158
                  6666444335***********************954688*******99 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   2.2e-09   3.2e-06      13      55 ..    1119    1160 ..    1089    1162 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 2.2e-09
                  CCB--B-TTEEEEEE..EEEECTTEEEEEE.CCCE.EEEEGCGEE CS
       SH3_2   13 kseLsfkkGdvikvlslgskdsdgwwegev.gGrv.GlfPsslve 55  
                  +seL +kkG+v++++   +++++gw ++ + +G + G++P+ ++ 
  CCD25020.1 1119 PSELPLKKGEVVYIT---RQEQNGWSLAKTlDGSKtGWVPTAYMT 1160
                  678************...*******99988877777****98875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   2.1e-05     0.031      16     128 ..      38     151 ..      22     162 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.1e-05
                  --EEEEEEESTTTT--HHHHHHHHHHHHHTT-.EEEEEEE-G.GG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSS CS
  RsgA_GTPase  16 vdqllivvslkepelslnlldrfLvlaeekgi.epvivlnKi.DlleeeeeleelkeelealgyevllvsaktkegleelkellkdktsvlvGqSGvG 111
                  v  l +++ ++++++++nl +rf+ +   + i +++i +n   Dl   ++++ +  +  ++l++++ +     ++ + +lk++ +++++++ G+SG+G
   CCD25020.1  38 VSDLTLLSKISDESINENLKKRFMNATIYTYIgHVLISVNPFrDLGIYTDAILDSYKGKNRLEVPPHVFAIA-ESMYYNLKSYNESQCVIISGESGAG 134
                  67788889999999**********999999998899999974388888887888888889999999988666.678899******************* PP

                  HHHHHHHHCTT-----S CS
  RsgA_GTPase 112 KStLinallpelelktg 128
                  K+   +++++    +  
   CCD25020.1 135 KTEAAKRIMQYIASAST 151
                  *9988888876444444 PP

>> DUF4047  Domain of unknown function (DUF4047)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.9   7.8e-05      0.12       7      39 ..    1156    1188 ..    1151    1198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 7.8e-05
     DUF4047    7 aafihetkveatistaiifPktvdtlveqakqh 39  
                  +a++ e+k+ ++ st i  P t +t+ +q +q 
  CCD25020.1 1156 TAYMTEAKITSSTSTPITVPNTTTTVTQQVQQT 1188
                  79************************9999985 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.4e-05     0.095      24      51 ..     121     149 ..     108     192 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.4e-05
      AAA_16  24 p.elvllsGesGvGKsslvrellralekd 51 
                 + ++v++sGesG GK+  ++++++++  +
  CCD25020.1 121 EsQCVIISGESGAGKTEAAKRIMQYIASA 149
                 339*******************9988765 PP

>> Hpr_kinase_C  HPr Serine kinase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0064       9.6      21      38 ..     125     142 ..     121     146 .. 0.87
   2 ?    5.4   0.0     0.008        12      76     149 ..     403     473 ..     378     496 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0064
                   EEEEESTCHHHHHHHHHH CS
  Hpr_kinase_C  21 vLitGesgvGKselaleL 38 
                   v+i Gesg GK+e+a  +
    CCD25020.1 125 VIISGESGAGKTEAAKRI 142
                   99************9766 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.008
                   TTTEEEEHHHHH-GGGB-SEEEEEEEEEEESTT---TTTSTTSS-EEEEETTEEEEEEEEE--TTS-HHHHHHH CS
  Hpr_kinase_C  76 rglGiidvkklfGaeavrekkeielvveLeewekkkeydrlgleeetkeilgvkvpkvtipvkpgrnlaviiea 149
                   +++Gi+d   ++G e +++++  +l+++ ++ + ++ + +l+l++e++++   k++ + i   + + +  +iea
    CCD25020.1 403 KSIGILD---IYGFEIFEHNSFEQLCINYVNEKLQQIFIQLTLKSEQETYEREKIQWTPIKYFDNKVVCDLIEA 473
                   5677777...59*******************************************9999999999999999997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00014       0.2       5      27 ..     122     144 ..     119     173 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00014
      AAA_22   5 agilvvtGesGtGKTtllrrlle 27 
                  +++++ GesG+GKT  ++r+++
  CCD25020.1 122 SQCVIISGESGAGKTEAAKRIMQ 144
                 5899***************9876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.3e-05      0.14       2      29 ..     124     151 ..     123     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.3e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-S CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegkl 29 
                  vi+ Ge+G GKT  ++++++ +a+   
  CCD25020.1 124 CVIISGESGAGKTEAAKRIMQYIASAST 151
                 589******************9998765 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.2    0.0016       2.4       4      18 ..     722     736 ..     722     737 .. 0.91
   2 ?    5.6   1.3     0.011        16       2      12 ..     738     748 ..     737     749 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0016
                 HHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRk 18 
                 a +IQ+awR++l+R+
  CCD25020.1 722 AARIQRAWRRFLQRR 736
                 568***********8 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.011
                 HHHHHHHHHHH CS
          IQ   2 kaaikIQaawR 12 
                 +aaikIQ+ +R
  CCD25020.1 738 DAAIKIQRTIR 748
                 79*******99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1289  (0.0718947); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.00u 0.34s 00:00:01.34 Elapsed: 00:00:00.48
# Mc/sec: 7749.52
//
Query:       CCD25021.1  [L=690]
Description: hypothetical protein NDAI_0E02050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.1e-54  182.5   0.4    1.3e-53  181.1   0.1    1.9  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    8.8e-50  168.5   0.1    4.8e-48  162.8   0.0    2.8  3  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    3.1e-40  137.1   0.7    1.5e-39  134.8   0.3    2.2  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.1   0.1   2.2e-57   1.3e-53       2     166 ..      96     259 ..      95     264 .. 0.98
   2 ?   -4.1   0.0       1.7     1e+04      60      98 ..     488     499 ..     486     507 .. 0.52

  Alignments for each domain:
  == domain 1  score: 181.1 bits;  conditional E-value: 2.2e-57
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   t+++++ +++ +++v++vfg+pG+ ilp++da++++  +++vl  +Eqga+++A+gyara+gkpgvvlvtsgp+atn++t +a+A  d++P++v++g
    CCD25021.1  96 TGGQIFHEMILRNNVDTVFGYPGGAILPVYDAIHDSSAFNFVLPKNEQGAGHMAEGYARASGKPGVVLVTSGPAATNVITPMADALADGVPMVVFTG 192
                   89*********************************************************************************************** PP

                   E--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC- CS
  TPP_enzyme_N  99 drptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlle 166
                   ++pts +g++++q e d l++ r++tk+++ v+s+ee+p+ + +A+++a+s+rpgPv+++lpkdv  +
    CCD25021.1 193 QVPTSAIGTDAFQ-EADVLGISRSCTKWNVMVRSVEEMPRRINEAFEIAMSRRPGPVLVDLPKDVTAA 259
                   *************.**************************************************9865 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.7
                   HHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N  60 ratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                    +tgk                           P++v +g
    CCD25021.1 488 NSTGK---------------------------PVIVTTG 499
                   34444...........................4554444 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         2   1.2e+04      80      93 ..      88     103 ..      88     117 .. 0.74
   2 ?    2.6   0.0     0.018   1.1e+02     108     152 ..     204     251 ..     183     252 .. 0.64
   3 !  162.8   0.0   8.1e-52   4.8e-48       1     153 []     499     646 ..     499     646 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2
                   EE-SBCCCHHHH..HH CS
  TPP_enzyme_C  80 lnNegygmtggq..qe 93 
                   ++N+  g+tggq  +e
    CCD25021.1  88 MDNSLIGLTGGQifHE 103
                   6999999999996643 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.018
                   S----HHHHHHHTTSE.EE..EESSH.HHHHHHHHHHHH.CSSSEEEEE CS
  TPP_enzyme_C 108 lkpvdfaklaealGak.ga..rvekadveeleealkeal.ekkgpalie 152
                   +++ d+  + +++    ++  +ve+  +  ++ea++ a+ ++ gp+l++
    CCD25021.1 204 FQEADVLGISRSCTKWnVMvrSVEEM-PRRINEAFEIAMsRRPGPVLVD 251
                   66677777778873332334344444.5666666666669999***998 PP

  == domain 3  score: 162.8 bits;  conditional E-value: 8.1e-52
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   ++G++++w+a+++  k+prs++tsgglgtmGyglpaAiGa++akp++ v+ i GD +f m+l+el+ av+ +  ++v++lnN+  gm+ ++q+ f++
    CCD25021.1 499 GVGQHQMWTAQYWTWKNPRSFITSGGLGTMGYGLPAAIGAQVAKPEALVIDIDGDASFNMSLTELSSAVQAGTAVKVLILNNGEQGMVTQWQSLFYE 595
                   69*********************************************************************************************** PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                    r+s+++   + ++df kla a+G kg+rv+k+  +el+ alke ++ kgp l+ev
    CCD25021.1 596 HRYSHTH---QLNPDFMKLADAMGLKGIRVKKQ--NELDSALKEFISYKGPILLEV 646
                   *****99...8999*******************..******************997 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.8   0.3   2.6e-43   1.5e-39       1     136 [.     292     436 ..     292     437 .. 0.96
   2 ?   -0.7   0.0      0.18   1.1e+03      29      46 ..     481     498 ..     475     505 .. 0.79

  Alignments for each domain:
  == domain 1  score: 134.8 bits;  conditional E-value: 2.6e-43
                   HHHHHHHHHH-SSEEEEE-CHHCHT.TGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvars.gaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgs 96 
                   i+kaa+l++ ak+pv++vG g+ ++ +  + l++l+++ +iPv+tt +g g++++++pl+l mlg+hg ++an a++++Dl++a+G+rfdd r+tg+
    CCD25021.1 292 IKKAADLINIAKKPVLYVGAGILNNmEGPRILKDLSQRAKIPVTTTIQGLGAFDQEDPLSLDMLGMHGCATANLAVQNSDLIIAVGTRFDD-RVTGN 387
                   79*********************9999****************************************************************.***** PP

                   TTTTTTT-.E........EEEEESSCCCCTTCC--SEEEECTHHHHHHH CS
  TPP_enzyme_M  97 epefapea.k........iihididpaeigknyqvdlaivgdvketlea 136
                    ++fapea +        iih++i+p++i+k++++++a+ gd+++ +e+
    CCD25021.1 388 ISKFAPEArRaalegnggIIHFEISPKNINKVVEAQVAVEGDAAANIEK 436
                   *******84488888999**************************98876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.18
                   HHHHHHHHHHT-EEEEEG CS
  TPP_enzyme_M  29 eelrelaeklgiPvvttl 46 
                   ++l +la+++g Pv+ t 
    CCD25021.1 481 TKLSKLANSTGKPVIVTT 498
                   68999*********5553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.47
# Mc/sec: 4383.83
//
Query:       CCD25022.1  [L=309]
Description: hypothetical protein NDAI_0E02060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-09   35.7   0.0    0.00019   21.2   0.0    2.7  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     1e-08   0.00019       2      60 ..      60     143 ..      59     145 .. 0.80
   2 !   11.6   0.0   9.3e-06      0.17     107     168 ..     223     287 ..     177     304 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1e-08
                 EEEE---BTT...................B--....TT----B-HHHHHHHHHHHHH.....HTTS---EE..EE-SSHHHHHHH CS
  His_Phos_1   2 yLvRHGetew...................naegrlqgrtdvpLteeGreqAealaer.....lagepidai..ysSplkRarqTa 60 
                 +L+RHG+  +                   n +  ++ + d++Lt++G++q++ ++e      +++ +i     +sSp++R+ +T 
  CCD25022.1  60 ILARHGQGYHnaaidrygmarwdeywsflNGD-EFGEWLDSKLTPLGVRQVQTIGEEvllpiFKDLGILPHvfFSSPMRRCLETF 143
                 67788887777777788888888888876555.59**********************8777777755544468**********95 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 9.3e-06
                 HHH-GGG-B.S-BHHHHHHHHHHHHHHHHHHTTTSE..EEEEE-HHHHHHHHHHHHT--GGGGGG CS
  His_Phos_1 107 dpadvrppg.gEsledvaaRvaaaleelaarheget..vlvVsHggvirallarllglpleelrr 168
                 ++++ + p+  E+ e++  R++  l el +r  +e+  v + +H gvi ++l+ l + p+ +l+ 
  CCD25022.1 223 EEDTLWLPDhRETKEEMDIRIHGGLTELFSRLTDEQrfVSITCHSGVIGSALRNLKHPPILNLDT 287
                 23333344458********************999999****************998877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2307.51
//
Query:       CCD25023.1  [L=109]
Description: hypothetical protein NDAI_0E02070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-41  141.9   4.8    1.6e-41  141.8   4.8    1.0  1  SPG4      Stationary phase protein 4
  ------ inclusion threshold ------
       0.16   12.1   0.0       0.21   11.7   0.0    1.2  1  DUF2590   Protein of unknown function (DUF2590)


Domain annotation for each model (and alignments):
>> SPG4  Stationary phase protein 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.8   4.8   1.8e-45   1.6e-41       1     109 []       2     108 ..       2     108 .. 0.97

  Alignments for each domain:
  == domain 1  score: 141.8 bits;  conditional E-value: 1.8e-45
        SPG4   1 siwdaFeVYnkkKHsknpkivGgnhsNvgesktqylyskEyrepkkkkkkdeeelakaeetsessseslkeeegaaka..pnmvdisklsqnEfkrlye 97 
                 ++wdaF+VYn+kKH+++ +++G+nhsN+g+s+t+y yskEy+ pk+ k  +++e    + t++s+ +++++e++ +++  p+mvd+s+lsq+Efk+ly+
  CCD25023.1   2 GFWDAFSVYNRKKHVDDIGMYGTNHSNIGSSNTSYAYSKEYYVPKDGKILKNNE----KVTMDSNGKVINRENNFISQdvPHMVDVSNLSQQEFKELYD 96 
                 69********************************************99888887....99999***********999999******************* PP

        SPG4  98 slrkGePdNrVN 109
                 ++rkGeP+NrVN
  CCD25023.1  97 NARKGEPNNRVN 108
                 ***********9 PP

>> DUF2590  Protein of unknown function (DUF2590)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.4e-05      0.21       6      42 ..      53      88 ..      49     102 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.4e-05
     DUF2590  6 tdddltLdaggePvlvedrasiaqDikHailesgllv 42
                +++ +t+d++g+ v+ ++ + i+qD+ H++  s l  
  CCD25023.1 53 NNEKVTMDSNGK-VINRENNFISQDVPHMVDVSNLSQ 88
                678999**9998.55667789*********9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.26s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 830.66
//
Query:       CCD25024.1  [L=281]
Description: hypothetical protein NDAI_0E02080, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-27   94.5   0.0    6.8e-27   93.9   0.0    1.3  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    1.6e-06   28.2   0.0    3.5e-06   27.1   0.0    1.6  1  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   7.6e-31   6.8e-27       6     114 .]      24     141 ..      21     141 .. 0.92

  Alignments for each domain:
  == domain 1  score: 93.9 bits;  conditional E-value: 7.6e-31
                  HHHHHHHHHCH..CSTTTC.EEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETT.CEEEETTTBSS--HHHHHHHHHHHHH.. CS
  PGM_PMM_III   6 lallakyllee..klkpga.gvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeS.ghiifldeattkDGilaallvleila.. 97 
                  +a++a+y+ e    +k+g  g++++++ts a++rva+k+g+k++e+++G+k++++++++++++++gEeS g+++++ +  +kDG++a++++l++la  
   CCD25024.1  24 VAIIAEYASEIpyFKKQGIyGLARSFPTSAAIDRVAAKHGLKCYEVPTGWKFFCALFDAKKLSICGEESfGTGSNHIR--EKDGLWAIVAWLNVLAiy 119
                  688999997778866667779*******************************************************88..8***************99 PP

                  .....HHTS-HHHHHHHHHHHH CS
  PGM_PMM_III  98 .....etgkslselleellkky 114
                       e++ s++++ +e+++ky
   CCD25024.1 120 nkhnpEKDASIKTIQHEFWNKY 141
                  9998877899999999999988 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   3.9e-10   3.5e-06      24      61 ..     204     244 ..     172     256 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 3.9e-10
                 HCCCCCCCCGCCEEEE.EEEETTCCE...EEEEEEESSHHH CS
  PGM_PMM_IV  24 sikeglkilledGrrlavRpSGTepl...lrvyvEaksdee 61 
                 s  +gl ++l +G r+++R SGT++    +r+y+E ++d++
  CCD25024.1 204 SDHQGLFFKLSNGARIVLRLSGTGSSgatIRLYIEKYTDDK 244
                 56899********************************6655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       491  (0.0273858); expected 358.6 (0.02)
Passed bias filter:                      428  (0.0238719); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2064.14
//
Query:       CCD25025.1  [L=685]
Description: hypothetical protein NDAI_0E02090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.4e-103  346.3   4.4   2.6e-103  345.5   3.9    1.7  2  Kinesin         Kinesin motor domain
    5.2e-23   81.6   0.3    5.2e-23   81.6   0.3    2.8  3  Microtub_bd     Microtubule binding
     0.0046   16.8   1.5     0.0046   16.8   1.5    3.5  3  PKcGMP_CC       Coiled-coil N-terminus of cGMP-dependent prot
  ------ inclusion threshold ------
      0.015   15.5   3.2      0.015   15.5   3.2    3.1  3  Fib_alpha       Fibrinogen alpha/beta chain family
       0.35   10.9   8.6        0.3   11.1   3.8    2.4  2  Rootletin       Ciliary rootlet component, centrosome cohesio
        1.1    9.2  10.7        0.4   10.6   0.4    3.2  4  Wtap            WTAP/Mum2p family
        1.4    9.3   7.3         20    5.7   0.1    2.7  2  CENP-H          Centromere protein H (CENP-H)
        4.2    7.4  12.1        9.6    6.2   0.4    3.3  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.15   3.4e+02     174     229 ..      63     118 ..      57     125 .. 0.78
   2 !  345.5   3.9  1.2e-106  2.6e-103      22     333 .]     100     467 ..      76     467 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.15
                 EESSHHHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEE CS
     Kinesin 174 evksaeevlellekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvki 229
                 +v+s+++ ++  ++ ++ r++++ ++n++S  S    tit+  + + +++ ++v++
  CCD25025.1  63 SVSSISDHFHAPRRFNTIRRTNSQTYNTKSEHSTYTGTITVAIRPKPTSNPSDVST 118
                 5667777777777788899**************99999999999877665544444 PP

  == domain 2  score: 345.5 bits;  conditional E-value: 1.2e-106
                 C................TCTCEEEEEEEEECTTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC..TTTSBSH CS
     Kinesin  22 e................ekkeeekkskkenkeeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk..eeeeeGi 102
                 +                +++++ ++++k+  ++   +fkFd+vf++ +++ e+y+ + +p+++++++G+n+tifaYG+tgsGKTyTm+g   +e+++G+
  CCD25025.1 100 TitvairpkptsnpsdvSTSSWLVTDEKTIAHDDVGEFKFDHVFNSFVSNLEIYQVINRPMIDKLFQGFNSTIFAYGMTGSGKTYTMMGCpeREQKDGL 198
                 1445555666666666667889999999999**********************************************************98888999** PP

                 HHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTT..................TSTSS.....EBEEEECTTSCCEEETTS--EEESSH CS
     Kinesin 103 ipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskk..................skkkk.....klkiredskkgevyvkgltevevksa 178
                 ip ++++lF++i++e+ + +k+f++ +sylEiYne+iyDLL +++                  +  ++     +lkir+dsk+g v v glte++++s+
  CCD25025.1 199 IPLSVSYLFTKIMEETLDGDKKFEIVLSYLEIYNEKIYDLLGDENnnnnnnngtlafgtptrnN--NNicfqnELKIRDDSKYG-VRVIGLTEKRCESS 294
                 ******************************************99999************98541..22456668********99.************** PP

                 HHHHHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEEEEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
     Kinesin 179 eevlellekgeknrkvaetklneeSSRSHavftitleqknlkeeteekvkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaek 277
                 ee+++++ kg+k rk+aet++n++SSRSHa++ i+l+ +++k++t+    +s+l+L+DLAGsEra+ ++    er+kE+a iNkSLlaLg+vis+L+++
  CCD25025.1 295 EELMNWIIKGDKIRKTAETDFNARSSRSHAIVLIRLTTSDMKDGTS---ISSTLSLCDLAGSERATGQQ----ERRKEGAFINKSLLALGTVISKLSTE 386
                 ****************************************998887...79************966555....579*********************99 PP

                 .........................CCTSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 278 .........................kkskhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                                          +   hipYRdSkLTrlLq +L+G+s ++ i+t+++++e+ +etl+tl+fa+rak+i
  CCD25025.1 387 snknrsptlpspplsssssstsinsSVPGHIPYRDSKLTRLLQPALSGDSIVTTICTIDTKNESSAETLNTLRFASRAKNI 467
                 9**********************988899**************************************************98 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.3   2.3e-26   5.2e-23      20     149 .]      99     239 ..      76     239 .. 0.82
   2 ?   -1.7   0.1       1.1   2.6e+03      43      72 ..     466     508 ..     439     522 .. 0.62
   3 ?    2.3   0.5     0.064   1.4e+02      15      80 ..     590     678 ..     585     682 .. 0.58

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 2.3e-26
                  TB-EEEEEEECCCS-T.EEEETTT...........TTTEEEE-SEEEECTTHCCCCCCCCHH.HHHHHHTT--EEEEEEES................. CS
  Microtub_bd  20 GniRvfarvrpelesekakikfpe........eekkkkkefsFdrvfeseseqeevfeeisq.lvqsaldgynvcifaygqTGsGKtyTmeg...eee 105
                  G+i v  r +p+++ +  ++++++          ++   ef+Fd+vf+s  ++ e+++ i+  +++  ++g n +ifayg TGsGKtyTm+g   +e+
   CCD25025.1  99 GTITVAIRPKPTSNPS--DVSTSSwlvtdektIAHDDVGEFKFDHVFNSFVSNLEIYQVINRpMIDKLFQGFNSTIFAYGMTGSGKTYTMMGcpeREQ 194
                  6666666666666664..444443344445555678889********************9752777777***********************999999 PP

                  ..ST-HCHHHHHHHHHHCCTS.CCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd 106 eagmipraveeifetiselke.kgwkyeielqfveiynekvqDlL 149
                  ++g ip +v+ +f++i e++    +k+ei l+++eiynek++DlL
   CCD25025.1 195 KDGLIPLSVSYLFTKIMEETLdGDKKFEIVLSYLEIYNEKIYDLL 239
                  9***********98876665427899******************8 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
                  T................TTTEEEE-SEEEECTTHCCCCCCCCH CS
  Microtub_bd  43 e.............eekkkkkefsFdrvfeseseqeevfeeis 72 
                  +              e++ +k++++ ++ ++ +eq+++++ ++
   CCD25025.1 466 NislhvnrkplvhtGEDSDDKNYKIMQLTKKLQEQQQLISTLR 508
                  0333334455666666778888888888888888888877665 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.064
                  HHHHCTB-EEEEEEECCCS-T..........EEEETTT.................TTTEEEE-SEEEECTTHCCCCCCCCHHHHHHHHT CS
  Microtub_bd  15 iqelkGniRvfarvrpelesek.........akikfpe..............eekkkkkefsFdrvfeseseqeevfeeisqlvqsald 80 
                  iq l+ + R +  +++eles+          ++ ++p+               ++k+++  +++++++ + +  +  + ++ l + al+
   CCD25025.1 590 IQGLQSQLRQYKEYTNELESKIrdfenankgTSRQYPNkgspsisnsnkeniIQDKENQILELQKMLNRKDKMIDALQSVRRLRDRALK 678
                  55555555555555555555432333222222222221334444455567776678888999999999988888888888888877775 PP

>> PKcGMP_CC  Coiled-coil N-terminus of cGMP-dependent protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.4      0.14   3.2e+02       6      28 ..     486     508 ..     484     511 .. 0.89
   2 ?    2.7   0.2     0.053   1.2e+02       7      30 ..     587     610 ..     584     615 .. 0.87
   3 !   16.8   1.5     2e-06    0.0046       2      29 ..     641     668 ..     640     669 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.14
   PKcGMP_CC   6 KDERIRELEkrlaekdeEIqELr 28 
                 K  +I  L k+l+e+   I  Lr
  CCD25025.1 486 KNYKIMQLTKKLQEQQQLISTLR 508
                 777999**********9999998 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.053
   PKcGMP_CC   7 DERIRELEkrlaekdeEIqELrsk 30 
                 + +I  L+ +l++  e  +EL sk
  CCD25025.1 587 ETKIQGLQSQLRQYKEYTNELESK 610
                 569999*****9999999999888 PP

  == domain 3  score: 16.8 bits;  conditional E-value: 2e-06
   PKcGMP_CC   2 llllKDERIRELEkrlaekdeEIqELrs 29 
                 +++ K+  I EL+k+l++kd+ I  L s
  CCD25025.1 641 IIQDKENQILELQKMLNRKDKMIDALQS 668
                 7999*******************98876 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0         1   2.3e+03      37      74 ..      77     114 ..      72     128 .. 0.82
   2 ?    2.0   0.2     0.093   2.1e+02     103     124 ..     489     510 ..     440     531 .. 0.68
   3 ?   15.5   3.2   6.8e-06     0.015      33     111 ..     586     670 ..     578     682 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1
                 HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  37 lekleneleeisnstkeaeelvkeikdslrekqkskkd 74 
                  ++++++ ++  n+++e ++++ +i+  +r+k +s++ 
  CCD25025.1  77 FNTIRRTNSQTYNTKSEHSTYTGTITVAIRPKPTSNPS 114
                 67788888899999999999999999999999998874 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.093
                 HHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha 103 nirvLqnvlesneqkiqkLeqd 124
                 +i +L++ l++++q i+ L+qd
  CCD25025.1 489 KIMQLTKKLQEQQQLISTLRQD 510
                 3444444444444444444443 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 6.8e-06
                 CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH......HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHH CS
   Fib_alpha  33 vkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdn......dnvikksskeleeeilrlketidaqesnirvLqnvl 111
                 ++++++ l+++l+++++ t+e e+ +++ ++  + + ++++++      ++  +++ ++ e++il+l++ ++++ + i +Lq+v 
  CCD25025.1 586 LETKIQGLQSQLRQYKEYTNELESKIRDFENANKGTSRQYPNKgspsisNSNKENIIQDKENQILELQKMLNRKDKMIDALQSVR 670
                 578999***********************99999999999974522221222223333446667777777777777777777665 PP

>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.2      0.11   2.5e+02      60      93 ..     481     514 ..     437     522 .. 0.70
   2 ?   11.1   3.8   0.00014       0.3      18      89 ..     590     665 ..     588     678 .. 0.66

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.11
   Rootletin  60 eleeeesadleealakLeeErqrseklaqvnslL 93 
                 e ++++++++ ++++kL+e +q  ++l q  + L
  CCD25025.1 481 EDSDDKNYKIMQLTKKLQEQQQLISTLRQDDKSL 514
                 4456667777788888888888888887776665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00014
   Rootletin  18 vskLqaKvlqYkkrcseleqrllektselektkltlllssareleeeesadl....eealakLeeErqrseklaqv 89 
                 ++ Lq+++ qYk+ ++ele+++ + +   + t+ +  ++   ++++++++++    e+ + +L+   +r +k+ + 
  CCD25025.1 590 IQGLQSQLRQYKEYTNELESKIRDFENANKGTSRQYPNKGSPSISNSNKENIiqdkENQILELQKMLNRKDKMIDA 665
                 689********************94433333333333333334444444443444488888888888887776654 PP

>> Wtap  WTAP/Mum2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.1   4.7e+03      61      85 ..     440     464 ..     437     468 .. 0.83
   2 ?   10.6   0.4   0.00018       0.4       5      76 ..     485     566 ..     481     569 .. 0.83
   3 ?    4.5   0.2     0.014        30     110     143 ..     586     619 ..     581     625 .. 0.84
   4 ?   -2.4   0.2       1.8   4.1e+03      16     141 ..     645     662 ..     636     679 .. 0.46

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.1
        Wtap  61 eleeaenkleeaqeeLqalkftpds 85 
                 +++  ++k e++ e+L++l+f   +
  CCD25025.1 440 TICTIDTKNESSAETLNTLRFASRA 464
                 6788999999999****99998765 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00018
        Wtap   5 realllarlsakeqelqelksslqelkqslqppsss.......qlrqvllDPAvnlvfsr...lrkeleeaenkleeaqeeL 76 
                  +++ +++l++k qe q+l s l++ ++sl++ sss       ++   l+DP + l++ +   l+++l ++e+ l +   eL
  CCD25025.1 485 DKNYKIMQLTKKLQEQQQLISTLRQDDKSLNKVSSSvydhmpgTTSGNLIDPTIALIYAEnkvLKHKLTNCEKLLDKDTVEL 566
                 56788999999*********999999999888654567777779************99655559*********999888777 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.014
        Wtap 110 eegrvakLeselalqkkfveelkkaleeleelle 143
                  e +++ L+s+l+  k++ +el+++ +++e+ ++
  CCD25025.1 586 LETKIQGLQSQLRQYKEYTNELESKIRDFENANK 619
                 5789999999999999999999999999998775 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 1.8
        Wtap  16 keqelqelksslqelkqslqppsssqlrqvllDPAvnlvfsrlrkeleeaenkleeaqeeLqalkftpdsqtGkrLmakcrvLeqENeELgkvleegrv 114
                 ke ++ el+                                                                                          
  CCD25025.1 645 KENQILELQ------------------------------------------------------------------------------------------ 653
                 333333333.......................................................................................... PP

        Wtap 115 akLeselalqkkfveelkkaleeleel 141
                                   k l++ +++
  CCD25025.1 654 ------------------KMLNRKDKM 662
                 ..................333333332 PP

>> CENP-H  Centromere protein H (CENP-H)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0088        20       6      49 ..     481     524 ..     476     557 .. 0.87
   2 ?    5.0   2.8     0.014        32      12      88 ..     587     669 ..     583     671 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0088
      CENP-H   6 eqrdelssellklsqelrelqeeltevekenlrlkrknrelaae 49 
                 e  d+ + ++++l+++l+e q+ +++++++ ++l++ + +   +
  CCD25025.1 481 EDSDDKNYKIMQLTKKLQEQQQLISTLRQDDKSLNKVSSSVYDH 524
                 567888899***********************999988776655 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.014
      CENP-H  12 ssellklsqelrelqeeltevekenlrlkrknrelaael.lelakekesek......eklkeelekleaelkksrqrwrvvknv 88 
                  ++++ l+++lr+ +e  +e+e ++++ +++n+   ++   +  + + s +      +++++++ +l++ l+++ +++  ++ v
  CCD25025.1 587 ETKIQGLQSQLRQYKEYTNELESKIRDFENANKGTSRQYpNKG-SPSISNSnkeniiQDKENQILELQKMLNRKDKMIDALQSV 669
                 5678889999999999999999999999999999999995433.2222222356888889999**********99999999887 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.9     0.012        28      61      87 ..     490     516 ..     482     521 .. 0.59
   2 ?    2.7   0.4     0.053   1.2e+02      22     107 ..     586     615 ..     546     623 .. 0.64
   3 ?    6.2   0.4    0.0043       9.6      35      71 ..     633     669 ..     630     673 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.012
  CENP-F_leu_zip  61 ieelaeelreleldLvalrsekeeLek 87 
                     i++l+++l+e ++ +++lr++ ++L+k
      CCD25025.1 490 IMQLTKKLQEQQQLISTLRQDDKSLNK 516
                     555555555555555555555555544 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.053
  CENP-F_leu_zip  22 LkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLeslnssle 107
                     L+ k+++L+                                                         +l++ +e  +eLes   ++e
      CCD25025.1 586 LETKIQGLQ--------------------------------------------------------SQLRQYKEYTNELESKIRDFE 615
                     333333333........................................................333333333333333333333 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0043
  CENP-F_leu_zip  35 mseenqekvileaEtskaevetlkeeieelaeelrel 71 
                     +s++n+e++i ++E++  e++++ + ++++   l+  
      CCD25025.1 633 ISNSNKENIIQDKENQILELQKMLNRKDKMIDALQSV 669
                     57899********************999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1199  (0.0668749); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 4483.65
//
Query:       CCD25026.1  [L=634]
Description: hypothetical protein NDAI_0E02100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-73  248.2   2.9    1.6e-47  162.3   0.0    2.5  2  DUF3589   Beta-mannosyltransferases
  ------ inclusion threshold ------
       0.42   11.0   3.6       0.16   12.4   0.3    2.0  2  YtzH      YtzH-like protein


Domain annotation for each model (and alignments):
>> DUF3589  Beta-mannosyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   3.4   2.4e-27   2.1e-23       2     192 ..     135     362 ..     134     371 .. 0.80
   2 !  162.3   0.0   1.7e-51   1.6e-47     242     486 ..     377     617 ..     370     626 .. 0.87

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 2.4e-27
     DUF3589   2 Ceelksekslevskak.nlkadlekilkkllkelenseylkelkkffkee..lkeqlkektiekhwyrlagssvwLeqygvhlmvsRvlyskkgkknkp 97 
                 C++l  + ++  s++   ++ +l k+ ++llk+ en++y    ++ff++e   k+  +e++iekhw r+  + vwLe  ++++  sRv+y ++++kn+p
  CCD25026.1 135 CNDLGYHANIGYSTDLiPIEDNLLKLRRQLLKN-ENKDY----ANFFRHEesEKNWSEEEIIEKHWSRFGPAPVWLESEQCFVSYSRVMYRHTDQKNQP 228
                 777777777776655414677888888888877.44444....4455433003344578889************************************* PP

     DUF3589  98 vvSllYaqvfdenWkelen.....veLvvpteekeekek.......................................kkkfkklkfPsflpipfyhnl 152
                  vSl+ aq fd++W+e+        ++++p++ ++e e                                          +    ++Ps++++pf  ++
  CCD25026.1 229 LVSLIRAQAFDKEWNEIVGkripySDVIIPSDVTKELEMlgdqfqehacdklkdsseyeqcitkhnksllenkrrkekILNRYFQSYPSLIEVPFNIKA 327
                 ****************9762222256789988887766699*******************************98876324455579*********8776 PP

     DUF3589 153 kktkkryyGpEDpRillvknekgyeEPlivfNskhrkikk 192
                 +       GpEDp ++l k +kg eEP+i+fN+ + + kk
  CCD25026.1 328 E----GCKGPEDPHVVLKKTSKG-EEPVIIFNMLDDTDKK 362
                 5....556**********99999.79*******8766554 PP

  == domain 2  score: 162.3 bits;  conditional E-value: 1.7e-51
     DUF3589 242 vkeLkkenekrakieKNWtpfiseeerkkkgydkkiyfvyrwenLevLkCeleeaesseCefeyklek...kkkekvgplrGGteLininelleeslkk 337
                 +++++++ ++ +k+eKNWtpf++ +++ +     +i+f+y++++Le+LkC+l+    + C+++++++     +++++ +++GGt++i++ ++l+e    
  CCD25026.1 377 IVTFRINGQEPKKVEKNWTPFFNDDSEGSGLSRGTIHFIYSFKPLEILKCSLT---DGLCDIVFDKKFldiGREDDFQDIHGGTQFIPLPNILPE---- 468
                 67899*******************999999999********************...689*****99878888899*****************995.... PP

     DUF3589 338 klpknreiwiGfaRahlkkCGCgksmYRPnlvvlvkdkekykishvssfisldievlgwkkkeklCegknvliPngissweiekdk.ekvkaeDyltlt 435
                    +++++w+G+++ hlk+  C+ + YRP ++++++dk  y+i+     ++++++v++w+ k + C  +++l P +i++we+ +++ ++++ eDy+++t
  CCD25026.1 469 --VQDQKMWLGLPKIHLKDTACSYHYYRPMVMLMIEDKGIYHIEMTVPILDFGLDVTSWDMKGTYCFFNQILSPHSIAYWEVISQDpQTKEYEDYMAIT 565
                 ..5899***************************************************************************88765488999******* PP

     DUF3589 436 lsvaDetveivhikgllkailksleeeeeese.keeekkkkknndnikCalk 486
                 +s aD+  +++ ikg+l++il   +e+  + + + +  + +  ++++ C+++
  CCD25026.1 566 MSEADALSKVMVIKGMLNYILGIYKEKALKPTfEVNGDTGTILKKSLGCVVD 617
                 *********************8444443333203333344445555666554 PP

>> YtzH  YtzH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       1.7   1.5e+04      58      72 ..     113     127 ..      96     132 .. 0.57
   2 ?   12.4   0.3   1.8e-05      0.16       4      48 ..     262     307 ..     260     315 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.7
        YtzH  58 ysqegkssqsldnhi 72 
                 ys++ k  ++++++ 
  CCD25026.1 113 YSKDHKRGKQQQQEH 127
                 555554444433333 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.8e-05
        YtzH   4 ehqltlLkDiLkeqqadccgtvseceQ.ierlvksllaneevdedv 48 
                 ++ l++L D  +e++ d+    se+eQ i++  ksll+n+  +e++
  CCD25026.1 262 TKELEMLGDQFQEHACDKLKDSSEYEQcITKHNKSLLENKRRKEKI 307
                 6789***********************889*********9877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       891  (0.049696); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4255.56
//
Query:       CCD25027.1  [L=408]
Description: hypothetical protein NDAI_0E02105 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.4e-104  348.3   0.0   5.2e-104  348.0   0.0    1.1  1  Asp              Eukaryotic aspartyl protease
    5.7e-15   56.0   0.2    2.8e-13   50.5   0.2    2.3  1  TAXi_N           Xylanase inhibitor N-terminal
    0.00021   21.1   0.0    0.00083   19.2   0.0    2.0  2  TAXi_C           Xylanase inhibitor C-terminal
  ------ inclusion threshold ------
       0.25   10.7   0.0       0.37   10.2   0.0    1.1  1  Ribosomal_L27_C  Ribosomal L27 protein C-terminal domain


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.0   0.0  1.2e-107  5.2e-104       1     315 []      93     407 ..      93     407 .. 0.98

  Alignments for each domain:
  == domain 1  score: 348.0 bits;  conditional E-value: 1.2e-107
                 EEEEEEEETTTTEEEEEEEETT--SEEEEBTTESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp   1 eYfgeisiGtpeqkftvifDTGSsdlWVpsskckkssackshstydpskSstykkngkslsisYGdgsvsGflsqdtvkvggltvknqefgeatkepgs 99 
                 +Yf++i++Gtp+q+f+vi+DTGSs+lWVps++c  s ac+ hs+yd+ kSs+yk ng++++i+YG+gs++G++sqdt ++g+l +++q+f+eat+epg 
  CCD25027.1  93 QYFADITLGTPPQSFKVILDTGSSNLWVPSVECG-SLACYLHSKYDHDKSSSYKPNGTDFAIRYGTGSLEGYISQDTLNIGDLNIPKQDFAEATSEPGL 190
                 7********************************9.9*************************************************************** PP

                 HHTTSSSSEEEE-S-GGGSCGGSCCHHHHHHHTTSSSSSEEEEEE-S...TTSSEEEEEESSEEGGGEEEEEEEEEESSTSSTEEEEEEEEETTEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 100 tflaakfdGiLGlgfkeisveeatpvfdnlvsqglikepvfsvylnr...eeeeggeivfGgvDeskykGsltyvpvtskgywqielesvtvggktvlc 195
                 tf+  kfdGiLGl++++isv++++p+f+n ++q+l++e+ f++yl     ++e+ggei+ Gg+D++k+kG++ ++pv +k+yw+++ e++ +g++ +  
  CCD25027.1 191 TFAFGKFDGILGLAYDSISVNKVVPPFYNAIEQELLDEKKFAFYLGDankKSEDGGEITIGGIDKTKFKGDIDWLPVRRKAYWEVKFEGIGLGDQFA-E 288
                 *********************************************665559999****************************************999.8 PP

                 EEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESE....EECCTSSSEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxx RF
         Asp 196 ssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilgl....vseeegdlwi 290
                  ++  a +DtGTsl+alp+  +e i+++igakk  + g+y+v+Cd+  +lpd++f+++g+++t+ + +++l+++    ++Ci+++     +e+ g++ i
  CCD25027.1 289 LENHGAAIDTGTSLIALPSGLAEIINTEIGAKKGWT-GQYTVECDARPNLPDLTFNFNGKNFTIGPYDYTLEVS----GSCISAImpmdFPEPVGPMAI 382
                 8999999*****************************.************************************9....68*****999999******** PP

                 EEHHHHTTEEEEEETTTTEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 291 LGdvFlrsayvvfdldnnrvglAea 315
                 +Gd Flr++y+++dl+nn vglAea
  CCD25027.1 383 IGDAFLRKYYSIYDLENNAVGLAEA 407
                 ***********************85 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.2   6.2e-17   2.8e-13       1     178 []      94     252 ..      94     252 .. 0.80

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 6.2e-17
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCk.aceasssaksgsssstceyeisygadgssssGvlat 98 
                 Y++ i +Gtppq++k+++DtGs+ +Wv                          v+c+s +C  +++  + ++s+ + +  ++ i+yg  g s +G +++
  CCD25027.1  94 YFADITLGTPPQSFKVILDTGSSNLWVPS------------------------VECGSLACYlHSKYDHDKSSSYKPNGTDFAIRYG-TG-SLEGYISQ 166
                 9****************************........................*********5445666666777778889999996.55.9******* PP

      TAXi_N  99 dtltlsstdgksvkvpnlvfGCgk..snlgglaagadGilGLGrgklSlvsqlaskg.......slgnkFsyCL..ssssssssgvlffGd 178
                 dtl +     +  ++p+  f+ ++    l   + + dGilGL++ ++S+ + +   +         ++kF+ +L   +++s+++g +++G+
  CCD25027.1 167 DTLNI-----GDLNIPKQDFAEATsePGLTFAFGKFDGILGLAYDSISVNKVVPPFYnaieqelLDEKKFAFYLgdANKKSEDGGEITIGG 252
                 *****.....6667777777765533556666678***********9976544322233333348899******98888999999999996 PP

>> TAXi_C  Xylanase inhibitor C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.58   2.6e+03      29      45 ..     290     306 ..     284     309 .. 0.81
   2 !   19.2   0.0   1.9e-07   0.00083      87     159 ..     332     404 ..     322     406 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.58
                 ---SEEE-SSSSSEEE- CS
      TAXi_C  29 gsggtvlstgtpytvle 45 
                 ++ g+ ++tgt++  l+
  CCD25027.1 290 ENHGAAIDTGTSLIALP 306
                 678999*****999887 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 1.9e-07
                 ..-S----EEEEESSS-EEEE-GGGGEEE-SSSEEEE.-EEE-..-S--SSSEEE-HHHHBTS-EEEETTTTEEEE CS
      TAXi_C  87 ragpavPtitlvleggaewtisgenllvkveggvvCl.afves..gvagesavviGglqlednllvFDleksrlgF 159
                 +a+p++P++t++++ g+++ti + ++ ++v+g+  C+ a++ +  +++  ++++iG + l++++  +Dle++ +g 
  CCD25027.1 332 DARPNLPDLTFNFN-GKNFTIGPYDYTLEVSGS--CIsAIMPMdfPEPVGPMAIIGDAFLRKYYSIYDLENNAVGL 404
                 5789**********.8****************9..76245555789999**********************99985 PP

>> Ribosomal_L27_C  Ribosomal L27 protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   8.2e-05      0.37      65     129 ..       6      68 ..       2      74 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 8.2e-05
  Ribosomal_L27_C  65 yLlrlrsllknGfsledAqfnakyylelelkLkakreelskekleeklkelkevtekldksvsfd 129
                       L+ l  ll n f++ dA++ +   +++el+L+       +e++++  +++ +  ek++ +vsf+
       CCD25027.1   6 SLVPLALLLLNTFNVADAKVHTAKIHKQELRLNDDI--PFEESVANLGQKYLHQFEKFNPEVSFS 68 
                      6788888999**********************5544..34888888889999999********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2949.36
//
Query:       CCD25028.1  [L=903]
Description: hypothetical protein NDAI_0E02110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-79  266.2   0.1    1.2e-78  264.2   0.0    2.0  2  Pkinase       Protein kinase domain
    1.6e-37  129.2   0.0    3.2e-37  128.2   0.0    1.5  1  Pkinase_Tyr   Protein tyrosine kinase
    1.4e-25   89.4   4.1    2.1e-13   50.4   0.3    3.2  3  FHA           FHA domain
    6.6e-08   32.8   0.0    6.7e-05   23.1   0.0    2.9  2  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d
    8.9e-06   25.2   0.0    2.1e-05   24.0   0.0    1.6  1  Kinase-like   Kinase-like
    2.1e-05   24.0   0.0    3.7e-05   23.2   0.0    1.4  1  Kdo           Lipopolysaccharide kinase (Kdo/WaaP) family
    5.6e-05   23.2   0.1     0.0074   16.2   0.0    2.3  2  APH           Phosphotransferase enzyme family
    9.3e-05   22.6   0.6      0.051   13.8   0.0    3.6  3  FHA_2         FHA domain
     0.0068   16.0   0.0      0.016   14.8   0.0    1.5  1  RIO1          RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.2   0.0   5.8e-82   1.2e-78       4     264 .]     205     474 ..     202     474 .. 0.94
   2 ?   -1.4   0.1       0.6   1.2e+03      46      99 ..     707     775 ..     691     798 .. 0.61

  Alignments for each domain:
  == domain 1  score: 264.2 bits;  conditional E-value: 5.8e-82
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHHHH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeeakk 102
                 +e +G+G+f++V kave++tgk++AvK+i+k+k   ++ + v rE+++l++l+hp+ivrl++++e+++++y+++e+v+gg+l+d++ ++g++ e+  ++
  CCD25028.1 205 DEVVGQGAFATVKKAVERSTGKTFAVKIISKRKVMGSNMDGVSRELEVLQRLDHPRIVRLKGFYEDHENYYMLMEFVSGGDLMDFVAAHGAVGEDAGRE 303
                 6889*****************************9999999*********************************************************** PP

                 HHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE..EEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH................TTSCBSHHHHHHHH CS
     Pkinase 103 iakqilegleylHskgiiHrDlKpeNiLidekge..lKitDFGlakelessskltsfvgtseYlAPEvl................keneyskkvDvWsl 183
                 i +qile+++y+Hs+gi HrDlKp+NiLi++++   +KitDFGlak  ++++ +++f+gt  Y+APE++                ++neys+ vD+Ws+
  CCD25028.1 304 ISRQILEAIKYIHSMGISHRDLKPDNILIEQDDPvlVKITDFGLAKVQDNGTFMKTFCGTLAYVAPEIIsgkndgelrenadansERNEYSSLVDMWSM 402
                 ******************************655579*********************************999998888877777666************ PP

                 HHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 184 GvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 G+++y +ltg+ pfsg+++k+ ++++ +           ++e   ++  is+ea+d++++ll+++p++Rltae++l+hp++
  CCD25028.1 403 GCLVYVILTGHLPFSGSTQKQLYKQISRG---------SYHEGPLKDFRISDEARDFIDSLLQVKPNDRLTAEKALEHPWI 474
                 ***************99998877777777.........445555666789******************************7 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.6
                 HHHHHHHHHHSCTTB--EEEEEEE...............SSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase  46 lrEikilkklkhpnivrlyevfee...............kdelylvleyveggeladllerkgslseee 99 
                   Eiki+   +h++++ ++  +++               k+ + +v +  ++++l ++l + ++++ +e
  CCD25028.1 707 GDEIKIICDWQHNFVIGFKVEINDstglfndgmspfetsKTIRAIVSQTDDEKSLVKRLIQMMAIQRAE 775
                 568888888888888888766666555555555555554444445555555555555555445554444 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2   0.0   1.6e-40   3.2e-37       4     254 ..     205     467 ..     203     471 .. 0.92

  Alignments for each domain:
  == domain 1  score: 128.2 bits;  conditional E-value: 1.6e-40
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  ++ +G+Gaf++V ++  +    ++  + avK++ k++ + ++++ + +e++++++l+hp+iv+l g++ ++e++++++e+v+gGdL +f+ ++   ++
   CCD25028.1 205 DEVVGQGAFATVKKAVER----STGKTFAVKIIsKRKVMGSNMDGVSRELEVLQRLDHPRIVRLKGFYEDHENYYMLMEFVSGGDLMDFVAAH--GAV 296
                  5789***********999....88899****996778899999*************************************************9..999 PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETT..EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE............... CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenk..vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk............... 181
                    +   +++ q+ ++++y++s+ + Hrdl   N+L+++++  +vki+DfGLa+     d+ +  ++    + ++apE+++ k+               
   CCD25028.1 297 GEDAGREISRQILEAIKYIHSMGISHRDLKPDNILIEQDDpvLVKITDFGLAKVQ---DNGTFMKTFCGTLAYVAPEIISGKNdgelrenadansern 391
                  9************************************9776699********987...5556666677889*********999999************ PP

                  .EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTT...SBHHHHHHHHHHT-SSGGGS--HHH CS
  Pkinase_Tyr 182 .ftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpek...cpeelyelmkkcweedpeeRptfse 254
                   ++s  D+Ws G l++ i+t g+ p++g +++++++++++g   e p k   +++e  +++ + ++ +p++R t ++
   CCD25028.1 392 eYSSLVDMWSMGCLVYVILT-GHLPFSGSTQKQLYKQISRGSYHEGPLKdfrISDEARDFIDSLLQVKPNDRLTAEK 467
                  *******************9.*****************999998887643337999999999999999999998766 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.3   1.1e-16   2.1e-13       1      69 []      67     135 ..      67     135 .. 0.93
   2 ?   -1.9   0.0       2.2   4.4e+03      25      47 ..     332     357 ..     320     360 .. 0.76
   3 !   38.9   0.2     4e-13   7.9e-10       3      68 ..     635     712 ..     633     713 .. 0.86

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.1e-16
                 EEEESS.TTSSEETTS.TTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA   1 vtiGRs.sdcdivldd.psiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 +t+GR+ +  d+ l d +++S kH++i   ++ g++ ++D +S+nGt++Ng r++k++ + L++gd+i++G
  CCD25028.1  67 WTFGRNaNIVDYHLGDiSRLSNKHFQILLGED-GNLLIKD-TSTNGTWLNGDRLRKDKNQLLSQGDEITVG 135
                 79****6668999999677**********999.*******.7**************************987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.2
                 EEEETTCEEEEEEEES....SSSSEEE CS
         FHA  25 ikfdkgsgkvyleDlg....SknGtfv 47 
                 i+ d++   v ++D+g      nGtf+
  CCD25028.1 332 IEQDDP-VLVKITDFGlakvQDNGTFM 357
                 555555.67788888888888999997 PP

  == domain 3  score: 38.9 bits;  conditional E-value: 4e-13
                 EESSTTSSEETTSTTSTTTEEEEEEETT..............CEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEE CS
         FHA   3 iGRssdcdivlddpsiSrkHalikfdkg..............sgkvyleDlgSknGtfvNgqrigkgepveLksgdviel 68 
                 +GRs+dc+ +++d+++Sr+H+ i  + +              +  +y +    +n  +vN+ ++++g +  L++gd+i++
  CCD25028.1 635 FGRSDDCNCRIEDSRLSRVHCFILKKRHavgdsiyespaqglDDIWYCHS--GSNVSYVNDIKLEQGSKCLLQHGDEIKI 712
                 8**********************9999999999**955555444444444..69************************98 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.4e-08   6.7e-05      18      83 ..      66     136 ..      61     138 .. 0.91
   2 !    6.1   0.0    0.0069        14      18      44 ..     632     658 ..     621     665 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.4e-08
                   EEEEES-TT.-SEE---.TTS-TT-EEEEEETTEEEEEE-CESS--EETTEE-SECC...--TTSEEEETT CS
  Yop-YscD_cpl  18 evviGsded.cDivLsD.kevsrkhlkLeveeesvrledlgsrngllvngerveele...lrpgdvlelGt 83 
                    +++G++ +  D  L D + +s+kh+++ + e++  l +  s+ng+++ng r  + +   l++gd++++G+
    CCD25028.1  66 IWTFGRNANiVDYHLGDiSRLSNKHFQILLGEDGNLLIKDTSTNGTWLNGDRLRKDKnqlLSQGDEITVGV 136
                   58899999999******999********************************99444468*********96 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0069
                   EEEEES-TT-SEE---TTS-TT-EEEE CS
  Yop-YscD_cpl  18 evviGsdedcDivLsDkevsrkhlkLe 44 
                    +++G+++dc+  ++D+ +sr+h+ + 
    CCD25028.1 632 PFFFGRSDDCNCRIEDSRLSRVHCFIL 658
                   5789*******************9775 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0     1e-08   2.1e-05     149     258 ..     304     424 ..     281     462 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1e-08
  Kinase-like 149 lTlqlirlaanLqakglvhgkftvdnllldekggl..mlggftaLvragtkvvl.seve..kgfaPpEllgsrgg..ytrk.....nktkmthkldaW 234
                  +  q++  + ++++ g+ h ++++dn+l +++ ++  ++++f+ L ++ +++    + +   ++  pE+++ ++    +++     ++ +++  +d W
   CCD25028.1 304 ISRQILEAIKYIHSMGISHRDLKPDNILIEQDDPVlvKITDFG-LAKVQDNGTFmKTFCgtLAYVAPEIISGKNDgeLRENadansERNEYSSLVDMW 400
                  44556666889*********************99722567876.88888888874566666778899999888766755441111145568999**** PP

  Kinase-like 235 qlGlviyriwclklPltlateeak 258
                   +G  +y i   +lP+   t++  
   CCD25028.1 401 SMGCLVYVILTGHLPFSGSTQKQL 424
                  ****************99887543 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.8e-08   3.7e-05     103     167 ..     284     346 ..     238     359 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.8e-08
         Kdo 103 qdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167
                  dL d++a +  ++e   r++ +++  +i+ +h++g+ H+dl + nil++q++     + + D+ 
  CCD25028.1 284 GDLMDFVAAHGAVGEDAGREISRQILEAIKYIHSMGISHRDLKPDNILIEQDD--PVLVKITDFG 346
                 59999***9999**************************************997..6666666665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.017        34      21     100 ..     226     302 ..     215     308 .. 0.70
   2 !   16.2   0.0   3.7e-06    0.0074     166     199 ..     318     351 ..     307     354 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.017
                 --EEEEEE-TT....S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHH CS
         APH  21 gryvlrrnppa....raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealge 100
                 +++++++++++     +   ++re+++l+ L    +   + ++     e+++ ++ l+e+v g +l +    a  ++++e++g+
  CCD25028.1 226 KTFAVKIISKRkvmgSNMDGVSRELEVLQRLDHPRIVRLKGFY-----EDHENYYMLMEFVSGGDLMD--FVAAHGAVGEDAGR 302
                 3777777777766667777888999999999877775567777.....44444589*******99999..55555666666554 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 3.7e-06
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                 +++ H+Dl+p+N+l+++dd+ ++ + Df++a++ 
  CCD25028.1 318 MGISHRDLKPDNILIEQDDPVLVKITDFGLAKVQ 351
                 6899************99999999*****99875 PP

>> FHA_2  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0       0.1     2e+02      49      85 ..      98     134 ..      84     138 .. 0.87
   2 ?    2.1   0.0      0.12   2.3e+02      10      41 ..     621     655 ..     610     663 .. 0.75
   3 !   13.8   0.0   2.6e-05     0.051      58      97 .]     685     725 ..     681     725 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.1
       FHA_2  49 kklvkvkqlGanpssvngkklkknesvelkegqtlel 85 
                 + ++ +k   +n + +ng  l+k+++  l++g+++++
  CCD25028.1  98 DGNLLIKDTSTNGTWLNGDRLRKDKNQLLSQGDEITV 134
                 55678999999**********************9976 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.12
       FHA_2  10 hkpikLpd.eeevviGRgp..etkikdkkcSrnqv 41 
                  ++i+L++  ++ + GR+   + +i+d+++Sr + 
  CCD25028.1 621 QESIPLSQgINPFFFGRSDdcNCRIEDSRLSRVHC 655
                 56788888558899****833468********875 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 2.6e-05
       FHA_2  58 Ganpssvngkklkknesvelkegqtlellee.kypytveFe 97 
                 G n s vn +kl++++++ l++g++++++ + ++ + + F+
  CCD25028.1 685 GSNVSYVNDIKLEQGSKCLLQHGDEIKIICDwQHNFVIGFK 725
                 99*************************99764888888885 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   7.9e-06     0.016      55     147 ..     246     340 ..     208     349 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.9e-06
                 HHHHHHHHHHHHHTT.--S--EE.EEETTEEEEE--EETTEEGGBHHHCG.-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETTEEEE- CS
        RIO1  55 aekEfrnLkrleeag.vpvPkpi.elkrhvlvmefigedgvaapklkdve.e..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvdedkvviI 147
                 + +E + L+rl +   v+    + ++++  ++mef++  g  +++   ++    e+  +e+ +++le+ +k ++ +g+ H DL   N+l+++d++v++
  CCD25028.1 246 VSRELEVLQRLDHPRiVRLKGFYeDHENYYMLMEFVS--GGDLMDFVAAHgAvgEDAGREISRQILEA-IKYIHSMGISHRDLKPDNILIEQDDPVLV 340
                 4677777777776653555555524556679******..55555555555445699999*******95.66677*******************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (903 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       943  (0.0525964); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 6339.55
//
Query:       CCD25029.1  [L=286]
Description: hypothetical protein NDAI_0E02120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-14   54.0  21.7    1.9e-14   54.0  21.7    2.1  2  Mei5           Double-strand recombination repair protein
     0.0042   16.9   0.8      0.046   13.6   0.1    2.5  2  Homeodomain    Homeodomain
  ------ inclusion threshold ------
      0.035   14.2   4.9        0.7   10.0   0.3    2.8  3  BACK           BTB And C-terminal Kelch
        3.2    7.5   7.8       0.76    9.6   2.7    2.4  2  Iron_permease  Low affinity iron permease


Domain annotation for each model (and alignments):
>> Mei5  Double-strand recombination repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   4.6      0.73   3.3e+03      10      89 ..      17      95 ..       8     101 .. 0.50
   2 !   54.0  21.7   4.2e-18   1.9e-14       9     205 ..      63     275 ..      54     276 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.73
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX...XXXXX......XXXXXX CS
        Mei5 10 psskkkkssgKqplsktlkerLkktrssfnsdtnvvk.rlkveneennetssekatsskeenql.qqsikildseeeeskll 89
                 + +++ +++++ ls+ +k++ k ++      +n+ + ++ +     ++t +  +t  + ++   +   k++ +  +e+ +l
  CCD25029.1 17 ATTTTTTKKENKTLSSKFKSPFKSPKLDDATLINISTlSTPIR---SCSTPKATTTTTTTTTTAhPMIYKKITKTDQEEIIL 95
                4444555555566666667777777776444444433233333...444444444444444444444455555554554444 PP

  == domain 2  score: 54.0 bits;  conditional E-value: 4.2e-18
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXX........XXXXXXXXXXXXXXXXXXX. CS
        Mei5   9 tpsskkkkssgKqplsktlkerLkktrssfnsdtnvvkrlkveneennetssekatsskeenql..qqsikil..dseeeeskllkstiknrdvckses 103
                 tp+ +++ ++        + +++ kt+++   ++ ++k+  +     ne++++ ++++ e+n+l   q++  +  ++   e +  + + k+r+++++++
  CCD25029.1  63 TPKATTTTTTTTTTAHPMIYKKITKTDQE---EIILKKKNMLL---HNELVNQIKSYERENNELkrMQKFITNdySRGGGEGSTQQLIKKWRSISQMTM 155
                 33333333333333333345577788877...88888888888...8999999999999999997633333220133447889999************* PP

                 ...................XXXXHHHHHHHHHHHHHHH..........HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH....S CS
        Mei5 104 slilnslkekie.......lekkeLeeekakLekqvre..........keelLrrLklvkkyeskndlseLqllikkwrnasqklleeLqkala....e 181
                 s+ lns + ki+       + +ke + ek+kLe+  ++          ++e+++ L+ +++ e+++++++   ++ +++n + k+le L+ +++    +
  CCD25029.1 156 SYLLNSISCKIDkmggyeeFIRKEFNMEKQKLEYHLDDgiresyeevmESEEFQNLNKDEQLEYQEQMEN---KLVELENFKTKQLERLENEFQsiikN 251
                 **********************************************************************...**************998888766656 PP

                 STTT---HHHHHHHTT--TTTS-E CS
        Mei5 182 senkeltlteLidryglddkLlhy 205
                 ++   l +++L++r+++d++L+++
  CCD25029.1 252 DSQGGLDMKQLAKRLKVDYSLVFP 275
                 66779*****************97 PP

>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.096   4.3e+02       5      33 ..      20      51 ..      17      54 .. 0.76
   2 !   13.6   0.1     1e-05     0.046       6      44 ..     232     273 ..     230     274 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.096
                 SSS-HHHHHHHHHHHH...HSSS-SHHHHHHH CS
  Homeodomain  5 ttftkeqleeLeklFe...enrypsaeereeL 33
                 tt tk++ ++L + F+   ++++++ ++   +
   CCD25029.1 20 TTTTKKENKTLSSKFKspfKSPKLDDATLINI 51
                 8899999********95555777777766666 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1e-05
                  SS-HHHHHHHHHHHH...HSSS-SHHHHHHHHHHHTS-HHHH CS
  Homeodomain   6 tftkeqleeLeklFe...enrypsaeereeLAkklgLeerqV 44 
                  +f+++qle+Le++F+   +n      ++++LAk+l+++ + V
   CCD25029.1 232 NFKTKQLERLENEFQsiiKNDSQGGLDMKQLAKRLKVDYSLV 273
                  89*************66669999999*********9987766 PP

>> BACK  BTB And C-terminal Kelch
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.75   3.4e+03      41      69 ..     119     147 ..      84     163 .. 0.60
   2 ?   10.0   0.3   0.00016       0.7      12      47 ..     183     218 ..     180     224 .. 0.87
   3 ?    5.5   0.2    0.0039        17      11      59 ..     228     277 ..     222     279 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.75
        BACK  41 skeqllellssdeLnvesEeevfeavlkW 69 
                 +++++++++ +d  +   E    + + kW
  CCD25029.1 119 ELKRMQKFITNDYSRGGGEGSTQQLIKKW 147
                 44555555555555555555555555555 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00016
        BACK  12 sceeLaeaakefilknfeevlkseeFleLskeqlle 47 
                 + ++L+ + ++ i++  eev++seeF++L+k++ le
  CCD25029.1 183 EKQKLEYHLDDGIRESYEEVMESEEFQNLNKDEQLE 218
                 567899999999******************998665 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0039
        BACK  11 ysceeLaeaakefilknfeevlkseeFleLskeqllellssd.eLnvesE 59 
                 +++e+ + +  e ++++f++++k++    L+++ql++ l+ d +L ++sE
  CCD25029.1 228 VELENFKTKQLERLENEFQSIIKNDSQGGLDMKQLAKRLKVDySLVFPSE 277
                 5677888889999*************************998834666666 PP

>> Iron_permease  Low affinity iron permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2       0.2   8.9e+02      65     107 ..      87     127 ..      66     143 .. 0.61
   2 ?    9.6   2.7   0.00017      0.76      73     116 ..     211     254 ..     175     265 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.2
  Iron_permease  65 nrdskaiqlkLdeLirasksaknrlidleelteeeleelakey 107
                      d++ i lk ++++  ++ + n+ i+  e +++el++++k++
     CCD25029.1  87 KTDQEEIILKKKNMLLHNE-LVNQ-IKSYERENNELKRMQKFI 127
                    4455556666666655555.3333.333344666777776665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00017
  Iron_permease  73 lkLdeLirasksaknrlidleelteeeleelakeyerlaeaake 116
                    l+ de +  +++ +n+l++le+++ ++le+l++e++++ +++++
     CCD25029.1 211 LNKDEQLEYQEQMENKLVELENFKTKQLERLENEFQSIIKNDSQ 254
                    44466699999************************998776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2081  (0.116069); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2317.38
//
Query:       CCD25030.1  [L=522]
Description: hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   2.3e-139  464.3   0.9     3e-139  464.0   0.9    1.1  1  Tfb2          Transcription factor Tfb2
    5.6e-23   81.1   0.4    1.4e-22   79.9   0.4    1.7  1  Tfb2_C        Transcription factor Tfb2 (p52) C-terminal doma
    0.00011   22.3   0.0    0.00024   21.2   0.0    1.5  1  Helicase_C_3  Helicase conserved C-terminal domain
  ------ inclusion threshold ------
      0.032   14.0   0.0      0.069   13.0   0.0    1.5  1  AHD           ANC1 homology domain (AHD)


Domain annotation for each model (and alignments):
>> Tfb2  Transcription factor Tfb2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  464.0   0.9  6.6e-143    3e-139       1     355 []      12     413 ..      12     413 .. 0.99

  Alignments for each domain:
  == domain 1  score: 464.0 bits;  conditional E-value: 6.6e-143
        Tfb2   1 eyleklpettlerLYkspatclaifrlLpslakqlvmrllylekpvplsdlekwvkkeskkekeealkkLkelhilkekklkekkqelklnptFkkslr 99 
                 +yle++p+++++rLY+spatclai+rlLp+l+k++vm++++++++v+l+dl++wvk+++k ++++a+k++k+lh++  +k + ++ ++ lnptF++s++
  CCD25030.1  12 QYLEEIPQQVQSRLYESPATCLAIYRLLPQLSKFFVMSMVFNNNEVSLRDLDRWVKPDAKLQFQDAIKSMKSLHLIIPSKGNGGPLMIILNPTFRESFK 110
                 6******************************************************************************999999************** PP

        Tfb2 100 kaltgggeeksfgvpseeedkekvdvefLdkyakekWesilhflvgseeeeepskevlelLkasglveekeskkslkItseGFqFlLqdinaQiwtlll 198
                 +altgg+ ++sfg+ s+e+++  v+ + L++y+++kWe+ilhf+vg+  ++ ps +vl+lLk+++l+ee e+++++kIt+eGFqFlLq+ n+Q+wtlll
  CCD25030.1 111 NALTGGQINNSFGIISDEDENGVVTSTLLNEYSANKWETILHFMVGTPMSSIPSGSVLNLLKHTKLMEEVENTGEFKITNEGFQFLLQELNSQLWTLLL 209
                 *************999999999**************************9988*********************************************** PP

        Tfb2 199 qylkaleergmdlvevlsflfqLsslelgkaYsvealsetqkemledLrdlGLvyqrkkkskrFypTrlattLts........................ 273
                 qylk +e+ +md+v+vl+f+f+L+ le+gk Ys++ lsetqk ml+d+rd+GLv+q+ ++sk+FypT+la++Lts                        
  CCD25030.1 210 QYLKLSETLNMDPVDVLNFIFMLGALEVGKGYSIDGLSETQKIMLKDMRDYGLVFQKVSNSKTFYPTNLALMLTSdtksivrtasgaiesvlnenrsgs 308
                 *************************************************************************************************** PP

        Tfb2 274 .......................sssessseskeegfiivETNfrvyAYtssplqialLslFvklkyrfpnlvvgkitresvreAlknGItadqIisyL 349
                                        ++   ++++  +g++ivETNf++y+Y++splqia+LslFv+lk+rf n+v+g+itres+r+Al nGIta+qIi+yL
  CCD25030.1 309 nanengyepgtkkknentimgtiDQVGMKNQDVPDGSLIVETNFKLYSYSNSPLQIAILSLFVHLKFRFVNMVTGQITRESIRRALINGITAEQIIAYL 407
                 ***********************8899999********************************************************************* PP

        Tfb2 350 eshahp 355
                 e+hahp
  CCD25030.1 408 ETHAHP 413
                 *****8 PP

>> Tfb2_C  Transcription factor Tfb2 (p52) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.4     3e-26   1.4e-22       1      68 []     446     513 ..     446     513 .. 0.98

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 3e-26
      Tfb2_C   1 DQIrLWekernRlkaeegvlyddFesqadfeevleyakelgvllwedeekrllvvkeeghesvkefik 68 
                 DQIrLW+ e +R+ a+eg ly+dFe+++++ ++ +ya+++gvllw+d++kr+++v++eg+ +v ++ k
  CCD25030.1 446 DQIRLWQLELDRVIAYEGSLYSDFENNTEYTTLYKYAQDIGVLLWKDDKKRKFFVSKEGNSQVLDYAK 513
                 9**************************************************************99976 PP

>> Helicase_C_3  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.4e-08   0.00024      39      70 ..     381     412 ..     363     420 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 5.4e-08
  Helicase_C_3  39 htyrltplSlrrAldaGltaeeiiefLerlsk 70 
                    t ++t++S+rrAl  G+tae+ii++Le++++
    CCD25030.1 381 VTGQITRESIRRALINGITAEQIIAYLETHAH 412
                   6779**************************97 PP

>> AHD  ANC1 homology domain (AHD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.5e-05     0.069      25      57 ..     176     208 ..     169     213 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.5e-05
         AHD  25 ivdiIeetGlyeitestfDFDLcaLDdeTiekl 57 
                   + +e+tG ++it++ f F L +L+++    l
  CCD25030.1 176 LMEEVENTGEFKITNEGFQFLLQELNSQLWTLL 208
                 56789********************99765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 4243.75
//
Query:       CCD25031.1  [L=466]
Description: hypothetical protein NDAI_0E02140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-37  129.2   0.6      2e-37  129.2   0.6    1.9  2  Ribonuclease_T2  Ribonuclease T2 family
  ------ inclusion threshold ------
      0.072   13.2   0.3       0.24   11.5   0.1    2.0  2  DUF5474          Family of unknown function (DUF5474)


Domain annotation for each model (and alignments):
>> Ribonuclease_T2  Ribonuclease T2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.6   2.3e-41     2e-37       2     172 ..      69     276 ..      68     302 .. 0.81
   2 ?   -0.3   0.1      0.13   1.1e+03      89     118 ..     381     409 ..     359     418 .. 0.61

  Alignments for each domain:
  == domain 1  score: 129.2 bits;  conditional E-value: 2.3e-41
                      SEEEEEEE-HHHHSS...SSS.----.-T.S--SS-EEEEEEEE-TTS-.--S--TTS---..........GGGGGGGHHHHHHHS----SH.. CS
  Ribonuclease_T2   2 dlllltqqWpgsfCee.ktkk.ecekvpd.kpaedftihGLwpdnsgksypenCnssekfd..........ekeisdllaelnkyWpslikk.. 80 
                      +++l++q+W  +  ++   ++ ++ +  +  p ++ft+hGLwpd+  +sy+++C+s+  +d            e ++ll++l+  W+s++ +  
       CCD25031.1  69 GIFLQSQFWNYKPRKRgM-NEtQLIE--QlGPLDSFTVHGLWPDDCFGSYEQFCDSKLFIDdvyhllkgfgAGEGQKLLNKLELLWKSNNGDhe 159
                      68999****555444431.2223323..236789***********8779********999999999888887788*************985577 PP

                      HHHHHHHHHTGGGG...........................TT..TS-SHHHHHHHHHHHHTT--HHHHHHHTT--S.SS-EEEHHHHHHHHHH CS
  Ribonuclease_T2  81 slwkhEwekHGtCa...........................aslpalksehkYFqkalelrkkldlkkvLakagIvPsktksyslseikdalkk 147
                      slw hE++kHG C+                           +sl a+k+  +YF+ +++l++k++++++L+k++I Ps ++ ys+s+i++alk+
       CCD25031.1 160 SLWIHEFNKHGSCIrnirpecyerwdhdgdgstkvnfrgqsQSLYAKKGVFDYFNITFNLFEKINTFEFLEKHDIIPSVENRYSKSQIEKALKN 253
                      **************888888888887777777777766542223334556******************************************** PP

                      HHSS--.EEEEEE..--EEEEEEEEE CS
  Ribonuclease_T2 148 aigvkp.kieCskdskeqalsevelc 172
                      +++++   i+C++   +++l+ev++ 
       CCD25031.1 254 EFQNRDvFINCDS---NNVLNEVWYY 276
                      ***99999****9...9*******93 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.13
                      HTGGGGTT..TS-SHHHHHHHHHHHHTT-- CS
  Ribonuclease_T2  89 kHGtCaaslpalksehkYFqkalelrkkld 118
                      +HG C+  + + ++e +  qk +++++++d
       CCD25031.1 381 RHGYCTVDEGK-SNELTCHQKNVKYASQFD 409
                      56666644333.234555555555555554 PP

>> DUF5474  Family of unknown function (DUF5474)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.69   6.2e+03      30      37 ..      51      58 ..      41      60 .. 0.86
   2 ?   11.5   0.1   2.6e-05      0.24       9      39 ..     261     291 ..     256     311 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.69
     DUF5474 30 tcsnkgti 37
                tc nk ti
  CCD25031.1 51 TCENKTTI 58
                9****998 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 2.6e-05
     DUF5474   9 fveyysnnvskdviysylmnstcsnkgtikl 39 
                 f++  snnv ++v y +l+n t  nk  i +
  CCD25031.1 261 FINCDSNNVLNEVWYYHLLNGTILNKDFIPI 291
                 89999*********************98864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3672.37
//
Query:       CCD25032.1  [L=393]
Description: hypothetical protein NDAI_0E02150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0015   16.8   7.1     0.0023   16.2   7.1    1.3  1  FPP             Filament-like plant protein, long coiled-coil
      0.004   16.8   7.0     0.0098   15.5   7.0    1.6  1  MAGSP           Male accessory gland secretory protein
  ------ inclusion threshold ------
      0.061   13.3   6.6       0.12   12.4   6.6    1.4  1  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
       0.31    9.7   6.4      0.028   13.1   2.0    1.4  2  WEMBL           Weak chloroplast movement under blue light
        0.8    8.8  16.4       0.15   11.2  11.8    2.0  2  Tmemb_cc2       Predicted transmembrane and coiled-coil 2 pro
       0.93    9.3   8.5       0.36   10.6   5.7    1.7  2  DUF724          Protein of unknown function (DUF724)
        3.4    8.3   8.5       0.94   10.1   3.9    2.3  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac


Domain annotation for each model (and alignments):
>> FPP  Filament-like plant protein, long coiled-coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   7.1   9.1e-07    0.0023     670     788 ..     129     247 ..      73     256 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.1e-07
         FPP 670 keipselplvsgsneskkeenkllkeeleelksekenlevelksatenleslkaqlqesEqllaelkseLeslkeskslaetqlkcmkesyesletrat 768
                 +  +s++++ ++s+  ++++  + ++  ++   + +  + ++++  ++le+ k+ l  +   +++lk ++++ k+ +  ++t+l+ +k  + +l+t+ +
  CCD25032.1 129 PSLSSKTSSRTSSKPTTSHSPYSYSHGSNNNSINNNSNQYDINTILKELEKFKSNLYSQQLEIENLKRDFNMEKNKNYSLQTELEINKSNNIKLSTKNS 227
                 33333333333323333344444444444445555556677888999**************************************************** PP

         FPP 769 eleaelnelkqkieaLeveL 788
                 +le ++n l++ i+++ +++
  CCD25032.1 228 KLELKINTLERSINEMRNNF 247
                 *************9999876 PP

>> MAGSP  Male accessory gland secretory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   7.0   3.8e-06    0.0098      90     187 ..     153     245 ..     140     253 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.8e-06
       MAGSP  90 skslksssid..lsniltdkglddfpakeknqgsnqialkalkqrllteqnnslllrnhsvslmkeiearktdiikvrqlnldlelelealkrklleln 186
                 s+   + si+   ++  ++  l ++   + n  s+q  +  lk+ + +e+n++        sl  e+e  k++ ik    n  lel++++l+r + e+ 
  CCD25032.1 153 SHGSNNNSINnnSNQYDINTILKELEKFKSNLYSQQLEIENLKRDFNMEKNKNY-------SLQTELEINKSNNIKLSTKNSKLELKINTLERSINEMR 244
                 555555565411456677778888888899*******************99764.......56789*******************************97 PP

       MAGSP 187 a 187
                  
  CCD25032.1 245 N 245
                 6 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   6.6   4.8e-05      0.12       9      80 ..     171     245 ..     164     248 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.8e-05
  CENP-F_leu_zip   9 lekLKeserkadsL...kdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrs 80 
                        LKe e+ +++L   +  +enL+r+ +m ++++ ++ +e E +k    +l ++  +l+ + + le  ++++r+
      CCD25032.1 171 NTILKELEKFKSNLysqQLEIENLKRDFNMEKNKNYSLQTELEINKSNNIKLSTKNSKLELKINTLERSINEMRN 245
                     55688888888887332446*************************************************999986 PP

>> WEMBL  Weak chloroplast movement under blue light
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       1.3   3.3e+03     257     290 ..      13      47 ..      10      58 .. 0.60
   2 ?   13.1   2.0   1.1e-05     0.028     280     364 ..     163     246 ..     132     251 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.3
       WEMBL 257 allldLkaeLaayve.sklkeeaeeeeeekksets 290
                 ++l +Lk+e + y++    ++++ e+++e  + + 
  CCD25032.1  13 DTLENLKNECNLYMNrIDSNDDEYENGNELYQDRG 47 
                 56888999999888854555555556665444444 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.1e-05
       WEMBL 280 eeeeekksetsikealasarkELeevkaniekakdevklLkvaaasLrseLekekaeLaslrqregmasiavssLeaelsrtkse 364
                 +++ ++ + ++i + l++ +  L   +++ie+ k + ++ k+   sL++eLe +k++  +l  +++     ++ Le  +++++++
  CCD25032.1 163 NNS-NQYDINTILKELEKFKSNLYSQQLEIENLKRDFNMEKNKNYSLQTELEINKSNNIKLSTKNSKLELKINTLERSINEMRNN 246
                 223.355566677789999999999999*************************************************99999876 PP

>> Tmemb_cc2  Predicted transmembrane and coiled-coil 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  11.8   5.9e-05      0.15     160     261 ..     108     210 ..      13     245 .. 0.71
   2 ?   -1.4   1.9      0.38   9.8e+02      55     151 ..     219     318 ..     211     387 .. 0.49

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.9e-05
   Tmemb_cc2 160 esgskslssstallvsksk.ytsddesssssvesssadsnsnseestasa.sksaesesqeklekileelqeikeeqerleeelerlkeqlkkelkllk 256
                  + s+ lss+ +++++++  ++s  +  ss+++s+ + s+s  ++s+ s+ ++ +++++q+++++il+el+++k++    + e+e+lk+++++e +  +
  CCD25032.1 108 GEPSSRLSSTATYVEQQPAfQPSLSSKTSSRTSSKPTTSHSPYSYSHGSNnNSINNNSNQYDINTILKELEKFKSNLYSQQLEIENLKRDFNMEKN-KN 205
                 445566667766666666533444444444433444444444444333332778889999********************************9963.33 PP

   Tmemb_cc2 257 qaLqe 261
                  +Lq+
  CCD25032.1 206 YSLQT 210
                 34443 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.38
   Tmemb_cc2  55 NqKsaqtiaqLqkKLeqyekrlkelelke..qksskss..rqskevlrdvgqglkdvggnirdg.isglsgaekktvvskprefahliknkfGSADnin 148
                 N K +++ ++L+ K+++ e+ ++e+ ++   q s  +s   ++   +r+++ +  +++ n  +g  s++s+++++ +  + re ++   n +   Dn +
  CCD25032.1 219 NIKLSTKNSKLELKINTLERSINEMRNNFylQPSLIQSpnLSPIRAVRNINSTGTTYS-N-PNGiPSSSSTSTRNGLLYNRREESEHPYNYYYNNDNNT 315
                 6666666777777777777777777655544333332222333333333333222222.1.12222333333344444444444444444444444444 PP

   Tmemb_cc2 149 slk 151
                 s++
  CCD25032.1 316 SSN 318
                 444 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.1   5.3e+03      24      40 ..     122     138 ..     120     141 .. 0.82
   2 ?   10.6   5.7   0.00014      0.36     102     181 ..     168     247 ..     164     250 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.1
      DUF724  24 PQrPHFspLleakeelR 40 
                  Q+P F+p l++k ++R
  CCD25032.1 122 EQQPAFQPSLSSKTSSR 138
                 69******999888877 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00014
      DUF724 102 deqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeeledveqeF 181
                  + + +l+e++k+++++  ++ e ++l+ +++  ++k   l+++l+  k+++ + + + ++l+ + ++le+++++++++F
  CCD25032.1 168 YDINTILKELEKFKSNLYSQQLEIENLKRDFNMEKNKNYSLQTELEINKSNNIKLSTKNSKLELKINTLERSINEMRNNF 247
                 5678899**********************************************************************999 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.81   2.1e+03      22      61 ..      12      51 ..       4      64 .. 0.61
   2 ?   10.1   3.9   0.00037      0.94      44      93 ..     181     230 ..     162     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.81
  HIP1_clath_bdg 22 qeeverekkeleeelerlkeeaerkleeqkeelekLkrel 61
                     + +e+ k+e +  ++r+ ++ ++ ++  +   ++  +e 
      CCD25032.1 12 DDTLENLKNECNLYMNRIDSNDDEYENGNELYQDRGSQEY 51
                    4556666666666666666666666665555555555555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00037
  HIP1_clath_bdg  44 erkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLq 93 
                     +++l  q+ e+e+Lkr++++++++  +l++ Le ++  + +ls++ ++L+
      CCD25032.1 181 KSNLYSQQLEIENLKRDFNMEKNKNYSLQTELEINKSNNIKLSTKNSKLE 230
                     34566899*****************************9999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1829  (0.102013); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 2948.10
//
Query:       CCD25033.1  [L=1117]
Description: hypothetical protein NDAI_0E02160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-56  189.5  16.2    3.1e-53  180.8   2.9    3.1  3  Y_phosphatase    Protein-tyrosine phosphatase
     0.0041   17.1   0.0      0.011   15.7   0.0    1.7  1  Y_phosphatase3   Tyrosine phosphatase family
  ------ inclusion threshold ------
       0.12   12.2   0.0       0.12   12.2   0.0    3.1  3  DSPc             Dual specificity phosphatase, catalytic doma
       0.14   12.3   1.8        3.2    7.9   0.0    3.0  3  PTPlike_phytase  Inositol hexakisphosphate


Domain annotation for each model (and alignments):
>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   2.3       2.7   1.2e+04      99     130 ..     411     440 ..     401     490 .. 0.50
   2 !   18.2   0.1   3.1e-07    0.0014       2      21 ..     599     624 ..     598     679 .. 0.76
   3 !  180.8   2.9   6.8e-57   3.1e-53      27     234 ..     850    1105 ..     824    1106 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 2.7
                    TTEEEEEE.EEEEEESSEEEEEEEEEETTTTE CS
  Y_phosphatase  99 gkikvtlkekekedekeyvlrelevkkkkees 130
                    ++i+++ k  ++++++++v + ++ +++++ +
     CCD25033.1 411 KDISLKEK--KNDENNNIVNEYTKNTNTTQAN 440
                    44444444..2222223333333333333322 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 3.1e-07
                    GGGSSSTTS-B-CTTEEEB......T CS
  Y_phosphatase   2 leknRykdilpydksrVkl......k 21 
                    + knRy++ilpy+++rVkl      +
     CCD25033.1 599 FAKNRYSNILPYEHTRVKLqpspigS 624
                    57*****************5444440 PP

  == domain 3  score: 180.8 bits;  conditional E-value: 6.8e-57
                     TTEEEEEEEEECT.E.EEEEEEEE---GGGHHHHHHHHHHTT--EEEEESBSEETTEESS---S-SSTSSEEEETTEEEEEE.EEEEEESSEEE CS
  Y_phosphatase   27 sdYInAnyikgyk.k.ekkyIatQgPlkstvedFWrmvwqekvkvivmLtsleekgrekcaqYwpeeeeesleygkikvtlkekekedekeyvl 118 
                     +dY nAny+k+ + + +++y+atQ+Pl+st++dFW++v+++++k+i++L+s++e+  +k++ Yw+  ++++ +y+   +++  ++ ++ + ++l
     CCD25033.1  850 DDYFNANYLKLPQiNpDFNYLATQAPLPSTMDDFWKVVISNNIKIIISLNSDDELAMKKWDIYWN--NQNYSNYKVKVIKCL-QNFSKLDGLIL 940 
                     57***********779*************************************************..555666666666777.6666888**** PP

                     EEEEEEETTTTE...EEEEEEEEEESSS-SSS.........SGSCCHHHH............HHHHHHHHHH....................ST CS
  Y_phosphatase  119 relevkkkkees...eerevkqlqytnWpdhg.........vpesaksll............klirkveksk....................ea 168 
                     r ++v+k k+++    +  v qlqyt+W d++         +       l             +i++ ek++                    ++
     CCD25033.1  941 RIFQVTKCKSNTsscCSSIVFQLQYTKWLDSCsivmtdllkI-------LkikdvlllenplTFIEQWEKNSinddnlheiyskmqkdgtiiKK 1027
                     ******99999888867799************8866666551.......2333333456555888888888899999999999999999***99 PP

                     TSS-EEEECSSSSHHHHHHHHHHHHHHHHHHHSE....EEHHH........HHHHHHTTSTTSS-SHHHHHHHHHHHH CS
  Y_phosphatase  169 ksgpvvVhCsaGvgRtgtfvaldillqqleaeee....vdvlq........ivkelrkqRpgmvqtleqyiflyevil 234 
                      ++p++VhCsaG+gRtg+f++ld+l+++l+++++    +dv++        +v+elrkqR++mvq+l+qyi +ye il
     CCD25033.1 1028 YDSPLLVHCSAGCGRTGVFITLDFLINILTNSKNssnnIDVWNmkhdlifiVVNELRKQRISMVQNLTQYITCYESIL 1105
                     9******************************5555678*************************************997 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.5e-06     0.011     117     140 ..    1024    1049 ..     876    1054 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.5e-06
  Y_phosphatase3  117 ladee...pvlfHCtaGKDRTGvlaal 140 
                      +++ +   p+l+HC+aG  RTGv++ l
      CCD25033.1 1024 IIK-KydsPLLVHCSAGCGRTGVFITL 1049
                      223.1236***************9865 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2      0.98   4.4e+03      11      61 ..     189     240 ..     184     248 .. 0.64
   2 ?   -4.7   2.8         4   1.8e+04      17      17 ..     455     455 ..     403     531 .. 0.60
   3 ?   12.2   0.0   2.7e-05      0.12      65      96 ..    1024    1053 ..     968    1102 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.98
                 HHHHHHHTCSEEEEESSSSSECECCTTTT.SEEEEECCESSTTSCCGGGHHH CS
        DSPc  11 lallsklgitlvinvtkevpnanalkkse.ieklripvedehetkiskylee 61 
                 ++ ls+ +i  ++n+ ++ ++ +++ +++ + + + p   +  tk+  +l+e
  CCD25033.1 189 KTTLSERKIPEILNLINKFQYFIFYDDNSnNLQNCNPSTYFLITKFKTFLDE 240
                 5677888999999999999888555444404444444666666666666665 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 4
                 H CS
        DSPc  17 l 17 
                 +
  CCD25033.1 455 H 455
                 1 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 2.7e-05
                  HHHHHHHTT-EEEEEESSSSSHHHHHHH.HHHH CS
        DSPc   65 fidkakqkgkkvlVHCqaGisRSatlii.aYlm 96  
                  +i   k+     lVHC aG  R++ +i+  +l+
  CCD25033.1 1024 II---KKYDSPLLVHCSAGCGRTGVFITlDFLI 1053
                  44...4556789************977414665 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   1.5     0.096   4.3e+02      11      75 ..     408     472 ..     372     501 .. 0.54
   2 ?   -2.8   0.0       1.3   5.9e+03     110     127 ..     872     889 ..     871     896 .. 0.85
   3 ?    7.9   0.0    0.0007       3.2     117     151 ..    1010    1049 ..     999    1054 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.096
                      ETTEEEEEE-GGG-TTT.T--.HHHHHHHHHHHHHHHHT-SEEEEEEEHHHHHTT-CCG-EEE-S- CS
  PTPlike_phytase  11 vngrpyvlrekedllen.lkeytgisaeeleklearlkeevlaeakksegrvlvhdeteegkdvkt 75 
                       n++ ++l ek++ ++n +++   ++++  ++ ++  k+ +   + ++ + +++ + ++++k+vk+
       CCD25033.1 408 NNNKDISLKEKKNDENNnIVNEYTKNTNTTQANHTGQKQSLSSVS-SYHKIYSLLHLQKQFKKVKK 472
                      344444555444444432322222233333333333333333333.33333333333333333333 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
                      TS---HHHHHHHHHHHHT CS
  PTPlike_phytase 110 ekapeeedfdalvsilke 127
                       +ap+++++d++ +++ +
       CCD25033.1 872 TQAPLPSTMDDFWKVVIS 889
                      689*********999865 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0007
                       HHHHHHHHHHTS-T.....T-EEEEE-SSSSHHHHHHHHH CS
  PTPlike_phytase  117 dfdalvsilkeape.....ktalvfnCqmGrgRTTtamvi 151 
                       ++++++s +++  +     +++l+++C++G gRT +++++
       CCD25033.1 1010 NLHEIYSKMQKDGTiikkyDSPLLVHCSAGCGRTGVFITL 1049
                       4444444444443367788999************988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1718  (0.0958224); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.28s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 7189.46
//
Query:       CCD25034.1  [L=1029]
Description: hypothetical protein NDAI_0E02170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-17   60.9   0.5    2.9e-16   59.1   0.5    2.1  1  IBN_N     Importin-beta N-terminal domain
    0.00056   20.0   0.1    0.00056   20.0   0.1    4.7  4  Xpo1      Exportin 1-like protein
     0.0028   18.0   0.2      0.012   16.0   0.2    2.1  1  Mog1      Ran-interacting Mog1 protein


Domain annotation for each model (and alignments):
>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.5   4.9e-20   2.9e-16       1      72 [.      33     103 ..      33     105 .. 0.95

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 4.9e-20
                 HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHGGSCCCHCGSXHHHHHHHHHHHHHHH CS
       IBN_N   1 AekqLkqlekqpgflsallqilanseselevRqlAalyLknlitkhWsdeeekqslpseekeqIrnnllnll 72 
                 Ae+qLkq+e qpg+  +l++i  + +++l++R+lAa+++kn ++++W++++ + ++ ++ek++Ir  l +l+
  CCD25034.1  33 AEQQLKQWEIQPGYHYYLQSIYLDLSNTLQSRWLAAIQFKNGVDRYWRSSRVH-AINKDEKASIRARLFELI 103
                 9***********************************************77777.*************99887 PP

>> Xpo1  Exportin 1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   9.3e-08   0.00056       7      96 ..     113     199 ..     107     227 .. 0.80
   2 ?   -0.9   0.2      0.26   1.5e+03      29      54 ..     605     629 ..     582     657 .. 0.62
   3 ?   -1.3   0.0      0.35   2.1e+03      75      95 ..     769     790 ..     698     816 .. 0.60
   4 ?    2.9   0.5     0.018   1.1e+02      79      99 ..     919     946 ..     825    1026 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 9.3e-08
                 HHHHHHHHHHHHHTTTTSTTHHHHHHHHHCT.HHHHHHHHHHHHHHHHHHHTSHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        Xpo1   7 klaealaelflqeypnnWpsffddllsllssspsglelllriLkvlpeEiadfsrskleqerrndlkdllrsnvqkilelllqileqsqs 96 
                 + a+a+a++++ ++p++Wp++f+ l slls +  ++ ++ ++ ++l+  i ++  + l + r  + k +++s+v+ i+ l+ +i  +s++
  CCD25034.1 113 QYAQAIAKIARLDFPAEWPDLFEHLESLLSDHNVRC-NNVKVYNMLMY-INQII-KVLGTARIGRCKPAMQSKVPLIFPLIVRIYLESFD 199
                 789****************************99999.55666666653.22322.46899999999999999999999999888766665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.26
                 HHHHHHHCT.HHHHHHHHHHHHHHHH CS
        Xpo1  29 ddllsllssspsglelllriLkvlpe 54 
                 +d++s++++ ++ ++ll++iL+v+p 
  CCD25034.1 605 SDIISQTKP-LIDQKLLIEILQVVPN 629
                 555555555.5555555555555543 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.35
                 HHHHH.HHHHHHHHHHHHHHHH CS
        Xpo1  75 llrsn.vqkilelllqileqsq 95 
                  lr+  ++ il++++ ++ +++
  CCD25034.1 769 KLREDsFELILQIWEILVLANE 790
                 2333336666666655555555 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.018
                 H...HHHHHHHHHHHHHHHHHCC....H CS
        Xpo1  79 n...vqkilelllqileqsqskk....q 99 
                     ++ i++l+++ile+ ++++    +
  CCD25034.1 919 VlteFENIISLWIDILEEINETSdgdcE 946
                 3333677777777777776665544440 PP

>> Mog1  Ran-interacting Mog1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2     2e-06     0.012      40      88 ..     928     978 ..     919     996 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2e-06
                 EEEEE--B--TT--THHHHHHHHHHHTTTSS--.....--EEEEEEE--.SS-- CS
        Mog1  40 siIvellerveeksdeealklhledlaeendase....eseveevekle.akke 88 
                 s+ +++le+ +e+sd ++ k+hl+d+++e++ s     + e+  +++ e +k++
  CCD25034.1 928 SLWIDILEEINETSDGDCEKYHLNDIVTEQSMSYhpltS-EQ--LREHElSKNN 978
                 788**************************9987654421.22..2211123333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1029 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 7024.69
//
Query:       CCD25035.1  [L=430]
Description: hypothetical protein NDAI_0E02180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      5e-74  248.9   0.0    6.5e-74  248.6   0.0    1.1  1  NAPRTase    Nicotinate phosphoribosyltransferase (NAPRTase) f
    1.8e-34  118.8   0.1    4.1e-34  117.7   0.1    1.7  1  NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N


Domain annotation for each model (and alignments):
>> NAPRTase  Nicotinate phosphoribosyltransferase (NAPRTase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.6   0.0   7.3e-78   6.5e-74       2     238 ..     172     413 ..     171     416 .. 0.98

  Alignments for each domain:
  == domain 1  score: 248.6 bits;  conditional E-value: 7.3e-78
                 SEEE-TSTTSSSHHHHHHHHHHHHH........HHTTTEEEESBHHHHHHHT--B--HHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHC.CHIIE CS
    NAPRTase   2 klhDFGtRrrsslesqeivvkalkk........ahlvnflGtdnvlaaakysikaaetsahealgkeqelsafrnnlkqfqkdaldlwvaiek.gnlgi 91 
                 ++++FGtRrr+sl++q++v++++ k        +  + +lGt+nvl+a+++++k+++t+ahe++++ +++s+   ++ +++kd++d w+++++ +n+g 
  CCD25035.1 172 QFSEFGTRRRRSLKTQDLVLQGILKainediskGYDKLLLGTSNVLFAKNFGLKPIGTVAHEWVMGVAAISN---DYINANKDSMDYWIKTFGaQNAGL 267
                 89*********************99999999999999**********************************9...*****************9899*** PP

                 EECHCCTHHHHHCCS-CC.HHHSEEEEE-SS-HHHHHHHHHHHHHCTCTTTCCCSEEEEESS-SHHHHHHHHHHHHHTTCEEEEEESHHHHSSECTTCT CS
    NAPRTase  92 aLtdlvltdaflkdfrle.akaylgvRpDSGdpvevieklaahygstlnskgytkrlifsDgldvekiieilealkkkgfniaFGiGtnltqdlnrdtl 189
                 aLtd+++td+flk+f    ++ay+gvR+DSGdp+++ ek+a+hy ++l+ ++++k ++fsD+l+vek+i++  a++ +g+ ++FGiGt++t+d+++ ++
  CCD25035.1 268 ALTDTFGTDDFLKSFYPPySDAYVGVRQDSGDPEKYAEKIAHHYLDVLKLPKFSKSICFSDSLNVEKAIKYNDAAQRNGLLATFGIGTHFTNDFQK-KS 365
                 ***************9999*****************************************************************************.** PP

                 TTCCEEEEEEEEEEEEEETTEETTBGGSSCCGSBGSGHHHHHHHHHHCT CS
    NAPRTase 190 efavkasalniviklvevnkdpvakisdrskkgrlgdkefvkllrtvfk 238
                 ++  k+++lnivikl++vn+++++kisd+ +k++ gd+++v++++++++
  CCD25035.1 366 NPNEKSEPLNIVIKLLKVNGNHAVKISDNLGKNM-GDPATVRRVKEELG 413
                 **********************************.*********99876 PP

>> NAPRTase_N  Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.7   0.1   4.6e-38   4.1e-34       1     125 []      10     139 ..      10     139 .. 0.95

  Alignments for each domain:
  == domain 1  score: 117.7 bits;  conditional E-value: 4.6e-38
  NAPRTase_N   1 LdtDlYkltmaqavfkkgpdvevvfelffRkkpfkgeyaivagleevieylenlrfteeeieyLkrklpyfkedfleyLr..tfrfkpse.vaveeeev 96 
                 LdtD+Yk+tm++avf+++p+++v +++++R+ ++ +++ ++++l+e+i+yl++lrf+++ei+yLk+ +py+++d+ley+   +f ++ps+ ++++  + 
  CCD25035.1  10 LDTDMYKITMHAAVFTNFPNANVIYKYTNRSSQMSFNEPAINWLKEQIKYLADLRFQPDEIAYLKEVIPYLPNDYLEYIGseNFALDPSSqIKFSSTQK 108
                 8*****************************************************************************975589999998899998777 PP

  NAPRTase_N  97 ..vfpgepeirveGpwieaillEtplLaivn 125
                    ++ ++++ +eG w ++il+E+plLa+v+
  CCD25035.1 109 pgTNHYDINLLIEGNWKDTILYEIPLLALVS 139
                 778999***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3238.16
//
Query:       CCD25036.1  [L=907]
Description: hypothetical protein NDAI_0E02190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-05   24.5   3.6      0.015   16.2   0.0    5.1  5  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.3   5.5e+03      13      26 ..     198     211 ..     191     228 .. 0.65
   2 !   16.2   0.0   8.1e-07     0.015       6      37 ..     301     333 ..     296     334 .. 0.90
   3 ?    0.9   0.0     0.053   9.5e+02      15      27 ..     504     516 ..     490     540 .. 0.67
   4 ?    2.8   0.1     0.014   2.5e+02      10      25 ..     621     637 ..     611     645 .. 0.80
   5 ?   -1.9   0.0      0.42   7.5e+03       9      26 ..     664     686 ..     659     691 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.3
                 EEEEEEETTSSEEE CS
        WD40  13 vtslafspdgawla 26 
                 v sl +s++ +++a
  CCD25036.1 198 VISLTWSSNDHYIA 211
                 55898999999976 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 8.1e-07
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  l+ H +sv slaf+ dg++l+sG++ + + +W
  CCD25036.1 301 LLKWHiDSVLSLAFNEDGTYLLSGGWEKVLIFW 333
                 4788*999**********************999 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.053
                 EEEEETTSSEEEE CS
        WD40  15 slafspdgawlas 27 
                  l f ++g+wl++
  CCD25036.1 504 NLTFTHNGDWLIT 516
                 577999****776 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.014
                 S.SS.EEEEEEETTSSEE CS
        WD40  10 H.ss.vtslafspdgawl 25 
                 H s+ v s+a+s+dg+++
  CCD25036.1 621 HfSNcV-SVAWSHDGSLI 637
                 753336.999*****997 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 0.42
                 SS..SS...EEEEEEETTSSEEE CS
        WD40   9 GH..ss...vtslafspdgawla 26 
                 GH  ++   +  +  s d+++++
  CCD25036.1 664 GHefNFdseIQTITLSNDSNLIV 686
                 88753367899999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 6622.87
//
Query:       CCD25037.1  [L=344]
Description: hypothetical protein NDAI_0E02200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-49  166.2  10.9    7.7e-25   87.1   0.2    3.0  3  Linker_histone  linker histone H1 and H5 family
     0.0017   17.9   1.9       0.47    9.8   0.1    2.2  2  MSC             Man1-Src1p-C-terminal domain
     0.0032   16.3   7.7     0.0032   16.3   7.7    1.8  2  DUF2207         Predicted membrane protein (DUF2207)
     0.0066   14.5  12.9       0.01   13.9  12.9    1.2  1  Dicty_REP       Dictyostelium (Slime Mold) REP protein
  ------ inclusion threshold ------
      0.017   15.4   0.0        3.9    7.8   0.0    2.3  2  TetR_C_24       Tetracyclin repressor-like, C-terminal domain
        3.6    6.8   9.8        5.6    6.2   9.8    1.3  1  Corona_M        Coronavirus M matrix/glycoprotein


Domain annotation for each model (and alignments):
>> Linker_histone  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.2   2.6e-28   7.7e-25       2      73 ..      27      97 ..      26      98 .. 0.97
   2 ?   -3.0   2.1       3.4     1e+04      33      69 ..     128     164 ..     125     168 .. 0.60
   3 !   86.1   0.1   5.1e-28   1.5e-24       2      73 ..     188     258 ..     187     259 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 2.6e-28
  Linker_histone  2 psykdMikeAIkalkerkGsSrqaIkkyikakykvv.dvskfksllkkalkkgvekgelvqpkgkGasGsfKL 73
                    +syk++i+e ++alk+rkG+Sr+++kky+k++y+ + + ++f++++++a+k+gve+g++ qpk  G+sG++KL
      CCD25037.1 27 KSYKEIIIEGLNALKSRKGVSRPSLKKYVKENYPNMaSSTAFDHHFNSAIKRGVESGVFAQPK--GPSGTLKL 97
                    79********************************99999999*********************..*******9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 3.4
  Linker_histone  33 kykvvdvskfksllkkalkkgvekgelvqpkg.kGasG 69 
                     k +v + +k ++    + ++g++ ++ + +k+ kGa+ 
      CCD25037.1 128 KKPV-KKAKKTTTTTTTTTTGATTKTTTATKNtKGAAT 164
                     4555.444455666666677777777777766667665 PP

  == domain 3  score: 86.1 bits;  conditional E-value: 5.1e-28
  Linker_histone   2 psykdMikeAIkalkerkGsSrqaIkkyikakykvv.dvskfksllkkalkkgvekgelvqpkgkGasGsfKL 73 
                     psy++Mi++ I al+e kGsSr+a+k+yik++y+ + d s+f++l++ a++kgve+gel qpk  G+sG +K+
      CCD25037.1 188 PSYREMIIKSILALNEGKGSSRPALKNYIKDEYSNTkDKSNFDNLFNAAIRKGVENGELSQPK--GPSGVIKV 258
                     9*********************************99999************************..*****998 PP

>> MSC  Man1-Src1p-C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.4   0.00077       2.3     130     187 ..      35     107 ..       6     171 .. 0.63
   2 !    9.8   0.1   0.00016      0.47     130     206 ..     197     279 ..     154     321 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00077
         MSC 130 k.....akksglseeeLkeslsekksksiskeefeelwkealkeLkkeeeivvredsesese.............k 187
                 +     ++++g+s  +Lk+ ++e+  ++ s   f++ +++a+k+  +++    + +  s                +
  CCD25037.1  35 EglnalKSRKGVSRPSLKKYVKENYPNMASSTAFDHHFNSAIKRGVESGVF-AQPKGPS--GtlklvaptptsssT 107
                 0444457899*************99999**************997777333.2222111..122355555554441 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00016
         MSC 130 k....akksglseeeLkeslsekksksiskeefeelwkealkeLkkeeeivvredsesese....ksskekkkllrstslaklsl 206
                      ++ +g s  +Lk+ ++++ s++ +k++f++l+++a+++  +++e++  +  ++       k++k+ +  l+ ++++k+ l
  CCD25037.1 197 SilalNEGKGSSRPALKNYIKDEYSNTKDKSNFDNLFNAAIRKGVENGELSQPKGPSG--VikvsKKGKSLISDLKKKKNKKVIL 279
                 0555567789999*****************************9999999943333333..1334333333333333334444444 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.24   7.1e+02     315     354 ..      20      66 ..       3     113 .. 0.64
   2 !   16.3   7.7   1.1e-06    0.0032     315     429 ..     175     322 ..     119     329 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.24
     DUF2207 315 l......dpyEkalldlLfdkseeg.kslkeikkyakkskkkakkfk 354
                        ++y + +++ L+  ++++  s  ++kky+k++  +  +  
  CCD25037.1  20 SsspsgsKSYKEIIIEGLNALKSRKgVSRPSLKKYVKENYPNMASST 66 
                 23345557777777777777777776778889999998655333333 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.1e-06
     DUF2207 315 l............dpyEkalldlLfdkseeg.kslkeikkyakkskk...kakkfkkalk.kwksavkk................kergyfdkkgkkkl 380
                              ++y + +++ +    e++  s  ++k y+k++ +   ++++f + ++ +++++v++                k+ + + ++ kkk+
  CCD25037.1 175 AkkgksslsssgsPSYREMIIKSILALNEGKgSSRPALKNYIKDEYSntkDKSNFDNLFNaAIRKGVENgelsqpkgpsgvikvsKKGKSLISDLKKKK 273
                 133333336666666666666666655555545644455555555543338888888776247788888***************966666666667777 PP

     DUF2207 381 kklsalglgliilglilillallllvlllvfllilllillliaiivlll 429
                 +k  +l+++l++++ +++  a+l +++l+ f++++ll  l++++i++++
  CCD25037.1 274 NKKVILIIFLFLILSLFFRQAILMFYYLFLFFSLTLLWPLIVLCIIYYC 322
                 7777776666666666666666666665555555555544444444433 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9  12.9   3.3e-06      0.01     230     363 ..     112     274 ..     102     289 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.3e-06
   Dicty_REP 230 sdieqesiesentqrensqpskeknkttttttttt....tttsqartrkrkaidddklsenqakekkknskksdddp...................... 302
                 ++++ +s ++e+  +e++  +k k++ttttttttt     tt++++ +k  a+  +k+s++ + +k k+s  s+ +p                      
  CCD25037.1 112 TTPSATSSSAEESDKEKKPVKKAKKTTTTTTTTTTgattKTTTATKNTKGAATTTKKVSKPSTAKKGKSSLSSSGSPsyremiiksilalnegkgssrp 210
                 445555555555555444333333333333333331000233333444444555566666666666666666666669***************988887 PP

   Dicty_REP 303 ......qsdfskkssrksgslkdvrvdnisdseldddvnesispeekiisvsnkikqcllEvlkskg 363
                       ++++s++   ++ + ++  +  i  + +++++ ++ + ++ +i vs k k+ +++  k k+
  CCD25037.1 211 alknyiKDEYSNTK--DKSNFDNLFNAAIR-KGVENGELSQPKGPSGVIKVSKKGKSLISDLKKKKN 274
                 77444333333322..23344455555555.666777777888889999999999999888766553 PP

>> TetR_C_24  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0013       3.9      47      71 ..      64      88 ..      52      99 .. 0.84
   2 ?    5.1   0.0    0.0086        26      46      70 ..     224     248 ..     214     255 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0013
                HHHHHHHHHHHHHHHHHHTTSB-SS CS
   TetR_C_24 47 lrreyerllrdlieeGvaagefedl 71
                   ++++++ ++i++Gv++g+f+++
  CCD25037.1 64 SSTAFDHHFNSAIKRGVESGVFAQP 88
                56789*****************543 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0086
                 HHHHHHHHHHHHHHHHHHHTTSB-S CS
   TetR_C_24  46 alrreyerllrdlieeGvaagefed 70 
                 + + ++++l+ ++i++Gv++ge+++
  CCD25037.1 224 KDKSNFDNLFNAAIRKGVENGELSQ 248
                 567899****************954 PP

>> Corona_M  Coronavirus M matrix/glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   9.8    0.0019       5.6      23      79 ..     278     335 ..     262     344 .] 0.65

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0019
                 XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Corona_M  23 vlllvfiviLqygyakrsrllyglkl.lvlWllWPlvlalsvlsaeyesnyvtlgiai 79 
                 +l++++ +iL   + +   ++y l l   l llWPl + + +  ++ ++++ +l++  
  CCD25037.1 278 ILIIFLFLILSLFFRQAILMFYYLFLfFSLTLLWPLIVLCIIYYCSLNPQMDMLVFIH 335
                 2333334455555555555666655515699*****************9999988743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2468  (0.137654); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.42
# Mc/sec: 2440.33
//
Query:       CCD25038.1  [L=687]
Description: hypothetical protein NDAI_0E02210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-78  264.2   0.3    1.8e-78  263.5   0.3    1.3  1  TRF              Telomere repeat binding factor (TRF)
    8.7e-09   35.4   0.5    3.7e-08   33.4   0.5    2.1  1  Myb_DNA-binding  Myb-like DNA-binding domain
     0.0012   18.1   1.4     0.0027   17.0   1.4    1.6  1  UCR_Fe-S_N       Ubiquitinol-cytochrome C reductase Fe-S subu
     0.0026   18.0   1.9     0.0032   17.7   0.1    2.2  3  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
       0.15   12.8   0.7       0.42   11.3   0.7    1.9  1  DUF573           Protein of unknown function, DUF573
        4.6    7.2   7.5       0.89    9.5   2.5    2.1  2  FAM60A           Protein Family FAM60A


Domain annotation for each model (and alignments):
>> TRF  Telomere repeat binding factor (TRF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.5   0.3   5.9e-82   1.8e-78       2     236 ..     128     405 ..     127     407 .. 0.98

  Alignments for each domain:
  == domain 1  score: 263.5 bits;  conditional E-value: 5.9e-82
                 HH..HHHHHHHHHHHHHHHHTHHH.HHHHHHHH.T....SHHHHHHHHHHHHCHCHCCCCHHHHHHHH...............HHHHHHSHHHHHHHHH CS
         TRF   2 lksLplLdnlstqllrllaespyq.kilaivsepd....sefgeafdtllslfertkklysekkplls...............psilkkressiestlr 80 
                 ++sL+lLdn+stqllrll+ ++   +ila++++++    s ++++f+tll+lf++++++y++++pll+               ps l+ +e++i+  +r
  CCD25038.1 128 ISSLCLLDNISTQLLRLLIFNAGSpQILALLTDKStylnSGETDIFQTLLKLFKQVRNIYNSRDPLLTvhdvapglwfpnsppPSLLRGHEPYIITAIR 226
                 89****************99999889************************************************************************* PP

                 HHHTTTHTTEECSSSTS-HHHHHHHHHHHHHHCTTS........HHHHHHHHHHHHHHHHHHHHHHHH.......TT-HHHHHHHHHHHSSSSTCCHH. CS
         TRF  81 kinlatfllsvlgtleigflelaenfldifcpenel........gkllkpqgvLyleLktqayisalk.......eaeerskeeiLddlfpddlediLl 164
                 k+nl+tfll+  g+ ++gf+ l+++fldifcp++ +        gk+lk+q  Lyl+Lktqa+isalk        +++ +++e+Ld++fp+dl++ L+
  CCD25038.1 227 KTNLLTFLLTAVGCFNYGFELLQSSFLDIFCPNTLYthgsgennGKFLKSQSILYLDLKTQAFISALKefennsnDIPKDKQTELLDTIFPSDLDTQLI 325
                 *********************************966***********************************9998899999****************** PP

                 ...............HHH..HHHHHTTHHHHHHHHHHHHHHHTCCHHHHCS-HHHHHHHHHHHHHCCCHHHHHHHHHCCCTT CS
         TRF 165 errng..........klltpsetdfverckkrkekLlniinekdkeLlqkyswesflkellsYvsknmsllvwgkkkkvsks 236
                  rr+g          +lltpse+dfverc++rke+L n++  +d  L  +y+w++f++ell+Y++knm+l++wgkk++++++
  CCD25038.1 326 HRRTGnmitdsqplnELLTPSEKDFVERCDRRKENLMNFTTFND--LVINYDWNHFIRELLEYCNKNMGLIIWGKKGRGKSP 405
                 **************9999**************************..********************************9986 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.5   1.2e-11   3.7e-08       2      46 .]     533     587 ..     532     587 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 1.2e-11
                      SSSBHHHHHHHHHHHHHHTTCHHHHHHHHT.S.........S-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhGnrWkkIaerlg.g.........Rtekqcrsrwrnyl 46 
                        W+++E++ L+e++k+ G +W+kI++ +g g         Rt  q +++ rn++
       CCD25038.1 533 RVWSKDEEDALIEGIKEVGPSWSKILDLYGpGgkvseslknRTQVQLKDKARNWK 587
                      67*************************88874467777777***********996 PP

>> UCR_Fe-S_N  Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.4     9e-07    0.0027      17      39 ..     435     457 ..     434     458 .. 0.96

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 9e-07
  UCR_Fe-S_N  17 iATgavgaVGaaaaawPfidqmn 39 
                 +A++a++aVG++   +P++d++n
  CCD25038.1 435 TAAAAAAAVGVGSQSYPLVDSFN 457
                 69*******************99 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         6   1.8e+04      18      32 ..     111     125 ..     104     128 .. 0.71
   2 !   17.7   0.1   1.1e-06    0.0032       1      41 [.     535     585 ..     535     603 .. 0.88
   3 ?   -3.7   0.1         5   1.5e+04      22      36 ..     607     623 ..     607     624 .. 0.72

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 6
  Myb_DNA-bind_6  18 ndWknIaealnrRtp 32 
                     n ++nI +al+ Rt 
      CCD25038.1 111 NRFNNIIRALPLRTR 125
                     579999998876765 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.1e-06
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknI..........aealnrRtpkqcfdrwkn 41 
                     W+++E+++L+++ ++ g  W++I          +e l++Rt+ q++d+ +n
      CCD25038.1 535 WSKDEEDALIEGIKEVGPSWSKIldlygpggkvSESLKNRTQVQLKDKARN 585
                     ***********************9999999998888978******998555 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5
  Myb_DNA-bind_6  22 nIaealn..rRtpkqcf 36 
                     nI++a++  +++++q++
      CCD25038.1 607 NIEKAYKskKKQKQQLQ 623
                     68888876777778777 PP

>> DUF573  Protein of unknown function, DUF573
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.7   0.00014      0.42       2      68 ..     532     595 ..     531     625 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
      DUF573   2 qrlWseeDEielLqglldfksktgtspksdldafy...eavksslssdvsksqlseKlrrLkkkyrnavs 68 
                 +r+Ws+++E +l++g+ +   +      s++ ++y    +v++sl+ + ++ ql++K r+ k  y ++ +
  CCD25038.1 532 KRVWSKDEEDALIEGIKEVGPSW-----SKILDLYgpgGKVSESLK-NRTQVQLKDKARNWKLHYLKNNK 595
                 79**************9974422.....444444444499999999.9999**************98765 PP

>> FAM60A  Protein Family FAM60A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.2      0.51   1.5e+03     128     156 ..      33      69 ..      14     113 .. 0.50
   2 ?    9.5   2.5    0.0003      0.89      82     156 ..     562     658 ..     549     673 .. 0.46

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.51
      FAM60A 128 sssereaspassdsasedsdesedeeek........k 156
                 +++++easp+ s +a+ + + + d++++        +
  CCD25038.1  33 NTNNSEASPIPSGTANANANADADDNATdpanttstS 69 
                 3344455555555444444433333333222222220 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0003
      FAM60A  82 gpglkslaklkkkekke.....................sskkieekfekklkkkkklkktkakasda..sssereaspassdsasedsdesedeeekk 156
                 gpg k  + lk++++ +                       +k+  ++ek  k+kkk+k++  ++s+     s+++++p+ ++++++++++++++++++
  CCD25038.1 562 GPGGKVSESLKNRTQVQlkdkarnwklhylknnkplpdYLQKVTGNIEKAYKSKKKQKQQL-QESNVpsGVSSQSNTPVPDNNNNNNNNNNNNNNNNN 658
                 6666655555555433344555566666666555555533344444445444444433322.222221222333444444444333333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1316  (0.0734006); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 4928.07
//
Query:       CCD25039.1  [L=266]
Description: hypothetical protein NDAI_0E02220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-21   74.2   0.2      1e-20   73.5   0.2    1.4  1  YEATS     YEATS family
    3.7e-06   27.0   0.1    7.2e-06   26.1   0.1    1.5  1  BET       Bromodomain extra-terminal - transcription regulati


Domain annotation for each model (and alignments):
>> YEATS  YEATS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.2   1.1e-24     1e-20       2      79 ..      30     110 ..      29     112 .. 0.88

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 1.1e-24
       YEATS   2 hkWtvavrsa.asddl...sefikkVqFkLhetyanptrvvekpPFevtetGwGeFeiqikiffkpeaekpltlehdLklhp 79 
                 +kW++ +    ++++    +++++kV ++Lh+t++np+r+v++ PF+++e+GwG F + i++ff ++a   l++ hdL++ +
  CCD25039.1  30 RKWSIEIVLIdEETKQeipATIFDKVIYHLHPTFENPNRTVTEVPFKIEEQGWGGFPLDISVFFLEKA-GDLKISHDLNFLK 110
                 79**999999544332459**********************************************774.56*******9965 PP

>> BET  Bromodomain extra-terminal - transcription regulation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.1     8e-10   7.2e-06       8      64 .]     202     263 ..     200     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 8e-10
         BET   8 keLseeInkLpgeklgrvveIIqere.....pelqsdedEiElDidaldddtLreLekyvkk 64 
                 ++L+ + +kL++++l +vv+++ +++      + + de+E  +D+ +l++  L  L++yvkk
  CCD25039.1 202 EKLAVAMTKLNEDDLVGVVQMVIDNKtpemiVTNNVDEGEFVIDLYSLPEGLLKSLWEYVKK 263
                 589999***************99999965443333788999*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2021.80
//
Query:       CCD25040.1  [L=283]
Description: hypothetical protein NDAI_0E02230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.48    9.5  27.5       0.66    9.1  27.5    1.2  1  DUF2457      Protein of unknown function (DUF2457)
        1.6    8.8  20.2        2.4    8.2  20.2    1.3  1  YL1          YL1 nuclear protein
          5    5.6  17.1        6.5    5.2  17.1    1.1  1  Macoilin     Macoilin family


Domain annotation for each model (and alignments):
>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  27.5   0.00011      0.66      38     164 ..      81     209 ..      77     254 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00011
     DUF2457  38 airkLgeeaeeEaeeeeeeeed.deedeeddddddddedddedddeedededddstvedlseeasdGyetD..nEaGFAdSdeeddedddlelWtpkas 133
                 +ir + + +e+    +ee+ +d d ++ +d+dd+++de d ++ ++e+ ded d +++++  e+++ +e+D  nE+   +Sd e++e +dl+l+ ++ s
  CCD25040.1  81 NIREVEDAIEDNTVIQEENVDDiDADEADDNDDENEDEHDVRN-ENENFDEDFDMETNESGLENENENESDleNEKEKENSD-EEEEYGDLQLFNVDPS 177
                 6777777777776655555443033333333333333333333.33333333333444444455666666644888899999.6666999999999777 PP

     DUF2457 134 taatsaekleqlatklerr.lSveesSissle 164
                  ++ + +k ++++ +++    S+++  i++++
  CCD25040.1 178 LTKIKDKKFNETEINISEIfGSTTTFEINTAT 209
                 76666666554444433220232222222222 PP

>> YL1  YL1 nuclear protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  20.2    0.0004       2.4      17     115 ..      96     214 ..      76     261 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0004
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxx RF
         YL1  17 qeeeedelellFaEeedDeefeseeeeeeee...nsDsdfdsdeedee...sdeeedeeegekelerqerkkr..............kkekkkrkaqkk 95 
                 qee+ d++++   +e+dD++ e+e+e +  +   n+D+dfd ++++     ++e+e ++e+eke e+   +++              k           
  CCD25040.1  96 QEENVDDIDA---DEADDNDDENEDEHDVRNeneNFDEDFDMETNESGlenENENESDLENEKEKENSDEEEEygdlqlfnvdpsltK----------- 180
                 3333444444...666666555554444333556899999888875556444444444445554333333333333333333222211........... PP

                 xxxxxxxxxxxxxxxxxxx.........................x RF
         YL1  96 kskkkkkkqkkkkkkkidp.........................q 115
                      k  +kk +     +                         +
  CCD25040.1 181 ----IK--DKKFN-----EteiniseifgstttfeintattvvsS 214
                 ....11..11111.....111222445555555555555555541 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  17.1    0.0011       6.5     210     354 ..     102     250 ..      85     271 .. 0.54

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0011
    Macoilin 210 dkeereaeeqlaaakelvevdpvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehn.....esvdsklqekeymenkskskrlskses 303
                 d +  ea+++    ++       + ++n++  ++ d +++ + le++++++s  +++++++++ e++     +  + + + ++ +++k ++++++ se 
  CCD25040.1 102 DIDADEADDNDDENEDEH----DVRNENENFDEDFDMETNESGLENENENESDLENEKEKENSDEEEeygdlQLFNVDPSLTKIKDKKFNETEINISEI 196
                 444444444222222222....22233333333335555556666666666666665555444444455666555555566666688888888999999 PP

    Macoilin 304 sgsesellveesvkskssssssssn...knskkasagsagssnssskkhsessk 354
                  gs+++   +  ++  ss+ ss++      sk++++++++s  sss++ s++++
  CCD25040.1 197 FGSTTTFEINTATTVVSSPRSSETDfknGGSKQTNTNATSSDASSSNNTSSNNN 250
                 999999999998888888888887654433344444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1621  (0.0904122); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 2039.56
//
Query:       CCD25041.1  [L=931]
Description: hypothetical protein NDAI_0E02240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-89  300.4   6.1    1.9e-89  299.9   6.1    1.2  1  DPPIV_N        Dipeptidyl peptidase IV (DPP IV) N-terminal re
    1.1e-53  181.8   0.1    2.2e-53  180.9   0.1    1.5  1  Peptidase_S9   Prolyl oligopeptidase family
    0.00032   20.4   0.0    0.00074   19.2   0.0    1.5  1  Esterase       Putative esterase
    0.00043   20.9   0.0      0.015   15.9   0.0    2.3  2  Abhydrolase_6  Alpha/beta hydrolase family
     0.0031   17.4   0.0       0.88    9.3   0.0    2.2  2  Abhydrolase_2  Phospholipase/Carboxylesterase
  ------ inclusion threshold ------
      0.018   14.3   0.0        2.5    7.3   0.0    2.3  2  Hydrolase_4    Serine aminopeptidase, S33
      0.024   13.3   0.1        1.4    7.5   0.0    2.4  2  AXE1           Acetyl xylan esterase (AXE1)
      0.025   13.1   0.0       0.26    9.8   0.0    2.2  2  PAF-AH_p_II    Platelet-activating factor acetylhydrolase, is
      0.028   14.1   0.0        3.2    7.3   0.0    2.6  2  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> DPPIV_N  Dipeptidyl peptidase IV (DPP IV) N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.9   6.1   9.3e-93   1.9e-89       6     353 ..     259     626 ..     254     627 .. 0.96

  Alignments for each domain:
  == domain 1  score: 299.9 bits;  conditional E-value: 9.3e-93
                 EEEEEECEEEESSSEETTEEEEEETTTEECEEEETT....TT.BSEEEEESSTTEEEEEETTEEEEESTTTS.EEEECES-STTTEEESB--HHHHHHT CS
     DPPIV_N   6 flllatnaeknwRhsytaeyyiydletneveelspg....eeklqlakwSPagdklafvrnnnLyvrelatg.keiqlTsdgsagifnGvadWvyeEEv 99 
                 +++l t+   ++Rhs+++ y+++dl+tn++++++p+     ekl++a +SP +++++fv++nnLy+++  ++ k++q+T+dgs+ i+n ++ W+yeEEv
  CCD25041.1 259 RAILMTDIVPEFRHSSKGYYFLKDLNTNKITPITPPasnsLEKLSYAAFSPSYNYVYFVYENNLYLKSAYNDgKVTQITNDGSSNILNAKTGWIYEEEV 357
                 5667799999****************************999**************************998888************************** PP

                 SSSSBEEEE-TTSSEEEEEEEECTTS-EEEEEESSSSC-SS-EEEEEE--BTTS---EEEEEEEECTTSCEEECS-HHHHCTTCEEEEEEEECTTSCCE CS
     DPPIV_N 100 lgsnsavwWspdgsrlaylrfdeseVpeitlpsytdeesqypevksikYPkaGsknpkVelkvvdlasgktvevqlpdslsekdeyitrvkWtsdeksl 198
                 l+s++++wW+pd+s+ ++++++e+ Vp++++p yt  + q p +k+ikYPk+G++npk++l+++dl +   +++++++  ++ d ++++++W+s++  +
  CCD25041.1 358 LASDKGIWWAPDDSKFVFAKINETDVPSYQFPLYTTGN-QFPLTKEIKYPKPGTPNPKIQLYMLDLINSVLYQINTGN--KDYDFILYDAQWVSSDF-F 452
                 ************************************87.5**************************999999*****6..999************99.* PP

                 EEEEEETTSTEEEEEEEETTTCCEEEEE...EEESSS-SSS-S-EEE-......TTTSSEEEEEEE.TTSSEEEEEEESSS-C.EEESS-SSS-EEE.. CS
     DPPIV_N 199 lvqwlnRsqnrlkvvlvdaetgravvkl...eetsdgWvelhdevhfl......krdesgflwise.kdGfkHLylfdldgkseikqlTsGeweVts.. 285
                 l+++++R ++ ++v++++a+ ++ +++    + + +gW+e++ ++ ++      +r+e g+++i   ++G++HL++f++ +++e kqlT+G+weVt+  
  CCD25041.1 453 LFKETDRASKIMNVKSYNAKESKLEIVRkidSTKYNGWIEKTFKILPIppkkslDRTEFGYVDIAVdQEGYNHLFYFPTVNSTEGKQLTKGQWEVTDrg 551
                 *****************887777777777799999***********99****************999****************999*********8778 PP

                 EEEEETTTTEEEEEESSSETTEBEEEEEESS.....CTTEEEESSTTTSEE..EEEEE-TTSSEEEEEEESSSSS CS
     DPPIV_N 286 ilavdekrdlvyFtatkdsPlerhlYsvsle.....sggeltrltdeegdh..ysasfspsgkyyvlkysgpdtp 353
                 i++++ ++d+++Fta++ +P+++hlY+vsl+     ++ +++ l+d ++++  y++ +s+sg++++ ky g +tp
  CCD25041.1 552 IVGFEYESDTIFFTANQIGPMAQHLYAVSLSdergdDHYTVQTLQDPNQKNdyYDFELSSSGRFAMAKYLGSSTP 626
                 *******************************99999999*********************************999 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9   0.1   1.1e-56   2.2e-53       5     211 ..     719     924 ..     715     925 .. 0.96

  Alignments for each domain:
  == domain 1  score: 180.9 bits;  conditional E-value: 1.1e-56
                   HHHHHHHCCT-EEEEE--TTSSTTHCHHHHTTSGGGGHHHHHHHHHHHHHHHHTT..S--GGGEEEEEETHHHHHHHHHHH.H-GGG-SEEEEESE- CS
  Peptidase_S9   5 selqlladrGyvvvvanirGsggyGeafhdagkrklgqnefdDfiaaaealakeg..yvdserlaitGgSyGGyltgaaln.qrpdlFkaavaevpv 98 
                    e+++++ ++ +v+++++rG+g +G++f+   k+klg +e +D+ +++++++k +   +d++r+ai+G+SyGG++t+ +++ +++++F +a+a++pv
    CCD25041.1 719 LEQAVASGLDAIVLQIEPRGTGTKGWKFRSWAKKKLGFYEPRDVTEVVQKFIKMNepHIDRKRVAIWGWSYGGFTTLKTIEyDKGETFTYAMAVAPV 815
                   677888899******************************************998889**************************************** PP

                   --CCCHHCSTTSTHHHCCCC--TTTCHHHHHHHHHH-CGGG-----EEEEEEETT-SSS-THHHHHHHHHHH--S-S.EEEEEETTS-SSTTSSHHH CS
  Peptidase_S9  99 vdvlrydsdtdllteeymewgnpeeneegykelspyspldnvkaypplLlihGlaDdrvppaealklvaaLqkkgkn.vlllifpdegHgvgkprak 194
                   ++++ yds    +te+ym+ +   +neegy+++s +++++ +k+ +++L+ihG+aDd+v+++++++++++L+ +g   ++++ifpd++H+++ ++a+
    CCD25041.1 816 TNWTFYDSI---YTERYMDAPL--NNEEGYRDISVVKDVEPFKNLNRFLIIHGTADDNVHIQNSYEFLDKLNLAGIRnYDMHIFPDSDHSIRYHNAQ 907
                   *********...*******666..5***************************************************99******************* PP

                   HHHHHHHHHHHHHHCT- CS
  Peptidase_S9 195 veelarllaFlkealgk 211
                   v  +++l+ +l+ a++ 
    CCD25041.1 908 VIIYQKLYYWLETAFNG 924
                   ************99985 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.7e-07   0.00074      19     209 ..     691     881 ..     682     911 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.7e-07
                 GGTTTEEEEEEE--TTHHCCHHHHHC..HHCCCCHCCT.EEEEEECCCSS-TTTTTSBTTSBB.TTEEETTCCCCCCHC.HHHHTHHHHHHHHHCSEEC CS
    Esterase  19 spgrkypvvylldGltgwdqnfrake..lleslaregeiaeviivvvprggessfysdwdlgarfyenategpgaeaye.tfltqeLlplldanfrtap 114
                 +p++kypv++   G    +q f++k+  lle+++++ +++ +++ + prg  +   + w++     + a++  +   ye + +t+ +  +++ n +  +
  CCD25041.1 691 DPKKKYPVLVNVYG-GPGSQTFTTKSsfLLEQAVAS-GLDAIVLQIEPRGTGT---KGWKFR----SWAKK--KLGFYEpRDVTEVVQKFIKMNEPHID 778
                 78899***999999.666666666552234666666.5777777777777777...777766....44444..44456678999**********99999 PP

                 CC.EEEEEETHHHHHHHHHHHC.STTTCCEEEEES--S-CC...........HCHHHCTTCCHHHCC-CCCCHCHHCHTTSEEEEEEEECTTBCCCHTS CS
    Esterase 115 dg.ravaGqSmGGlgALilalk.hpdrFgsvssfSpivnps...........namWgqeekeawqendpvllakelsaslkalriyldvGtseddlgeq 200
                 ++  a++G S GG++ L +  +   + F+++++ +p+ n +           +a+    ++e  + +++++ +k  +  +   r ++  Gt +d+++ q
  CCD25041.1 779 RKrVAIWGWSYGGFTTLKTIEYdKGETFTYAMAVAPVTNWTfydsiyterymDAPL---NNE--EGYRDISVVKDVEPFKNLNRFLIIHGTADDNVHIQ 872
                 8889*************99877699***********98888886666643332222...222..24555555554444444456677778888888888 PP

                 CHHHHHHHH CS
    Esterase 201 lsveilevl 209
                 +s e+l+ l
  CCD25041.1 873 NSYEFLDKL 881
                 888888755 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.6e-06     0.015      11      86 ..     714     801 ..     698     836 .. 0.62
   2 ?    2.7   0.0     0.081   1.6e+02     164     217 ..     838     908 ..     814     909 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.6e-06
                    ...GCHHHHHHHHCCT....CEEEEE--TTST......S-GGCS.--HHHCHHHHHHHCCTT........TTSEEEEEETCHHHHHHHHHHCC CS
  Abhydrolase_6  11 assWlvapLaallaag....vhvlapDlpGhG......rsdppp.ldledladlaalldelaa......gggpvvlvGHSlGGalalaaapla 86 
                    +ss+l   L  + a+g    v  l +  +G+G      rs+ +  l++ + +d+ ++++++++      ++++v ++G+S+GG+  l +  + 
     CCD25041.1 714 KSSFL---LEQAVASGldaiV--LQIEPRGTGtkgwkfRSWAKKkLGFYEPRDVTEVVQKFIKmnephiDRKRVAIWGWSYGGFTTLKTIEYD 801
                    66662...3333333333225..7788889984444443333335555555**********999********************666643343 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.081
                    CHHTT-TTGC...........EEE.CTT-CHHH.....HCHHCCCH..STTEEETCE...SSS-HHHHSHHHH CS
  Abhydrolase_6 164 aawadlpvpl...........lvl.ggeDplvp.....rllerlla..qagarlpvvlpgaGHlphleepdev 217
                    + ++d+ v             l++ g++D+ v+     ++l++l    ++ +++ +++p+++H++   ++++v
     CCD25041.1 838 EGYRDISVVKdvepfknlnrfLIIhGTADDNVHiqnsyEFLDKLNLagIRNYDM-HIFPDSDHSIRY-HNAQV 908
                    444444444455555555555555579999555335555566555577788888.********9877.77666 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0059        12      94     123 ..     766     798 ..     758     812 .. 0.76
   2 !    9.3   0.0   0.00044      0.88     160     209 ..     859     909 ..     850     918 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0059
                    HHHHHHTT...--GGGEEEEEETHHHHHHHHHH CS
  Abhydrolase_2  94 idaelkkg...ipssriiigGFSqGaalalyla 123
                    +++ +k     i+++r++i G S G+  +l+++
     CCD25041.1 766 VQKFIKMNephIDRKRVAIWGWSYGGFTTLKTI 798
                    33333333447*****************99987 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00044
                    EEEEETT-SSS-HHHHHHHHHHHHTTS-.GEEEEEETT--SS--HHHHHHH CS
  Abhydrolase_2 160 lqiHgeeDpvvplalgkaakevlkkllk.kvelksyeglaHsideeemqdi 209
                    l iHg+ D  v ++ ++++   l  +   ++++++++++ Hsi ++  q i
     CCD25041.1 859 LIIHGTADDNVHIQNSYEFLDKLNLAGIrNYDMHIFPDSDHSIRYHNAQVI 909
                    568********999999998888877778**************99887755 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0013       2.5      56     113 ..     760     818 ..     726     830 .. 0.70
   2 ?    4.5   0.0    0.0089        18     194     232 ..     858     899 ..     842     903 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0013
  Hydrolase_4  56 ddyvdDlaafvekvkeehpelplfllGhSmGGliallyl.lrypdkvaglilsaPalki 113
                   d+++ +++f+++ + +  ++++ ++G S GG+++l+ +  ++ + ++ ++ +aP+ ++
   CCD25041.1 760 RDVTEVVQKFIKMNEPHIDRKRVAIWGWSYGGFTTLKTIeYDKGETFTYAMAVAPVTNW 818
                  4444445555544333334449*****************77777789999999998765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0089
  Hydrolase_4 194 llllhGeaDkvvdpeasrelyerlgsk...dktlklypglyH 232
                  +l++hG+aD  v+ ++s e++++l+ +   +  ++++p   H
   CCD25041.1 858 FLIIHGTADDNVHIQNSYEFLDKLNLAgirNYDMHIFPDSDH 899
                  79*******************998765333555666666666 PP

>> AXE1  Acetyl xylan esterase (AXE1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   0.00071       1.4     163     189 ..     769     795 ..     679     805 .. 0.79
   2 ?    3.1   0.1     0.015        30     211     261 ..     840     890 ..     834     915 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00071
                 HHHHTSTTEEEEEEEEEEETHHHHHHH CS
        AXE1 163 eivaslpevDeeRvavlGasqGGalal 189
                  i ++ p++D +Rva+ G+s GG  +l
  CCD25041.1 769 FIKMNEPHIDRKRVAIWGWSYGGFTTL 795
                 3678999****************7776 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.015
                 HHHHHHH-SSTTCHHHHHHHHHSH-CCHHHHHHHHHHTT-HHHHHCC--S- CS
        AXE1 211 fkRvvelaleeaYdEitrylkldperekeeevletLsYiDvknlAkrvkae 261
                 ++ +  +++ e++++++r+l ++ + + + ++ +   ++D  nlA   + +
  CCD25041.1 840 YRDISVVKDVEPFKNLNRFLIIHGTADDNVHIQNSYEFLDKLNLAGIRNYD 890
                 6667778889***********************************877665 PP

>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.061   1.2e+02      90     116 ..     686     712 ..     652     774 .. 0.75
   2 ?    9.8   0.0   0.00013      0.26     224     258 ..     776     812 ..     757     875 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.061
                  ET--B--SS-EEEEEEE--TT--TTTT CS
  PAF-AH_p_II  90 knellktkekyPlivFsHGLgafRtlY 116
                  k + + +k+kyP++v   G  ++ t+ 
   CCD25041.1 686 KPAFMDPKKKYPVLVNVYGGPGSQTFT 712
                  557899***********9999998874 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00013
                  -EEEEEEEEEEETHHHHHHHHHHHH-..TTS-EEEEE CS
  PAF-AH_p_II 224 nldtskvaviGHsFGgAtvikslsed..teFrcaial 258
                  ++d+++va+ G s+Gg t++k++ +d    F  a+a 
   CCD25041.1 776 HIDRKRVAIWGWSYGGFTTLKTIEYDkgETFTYAMAV 812
                  79*********************99977667766664 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0016       3.2      56      88 ..     763     795 ..     697     802 .. 0.71
   2 ?    4.1   0.0     0.016        32     198     252 ..     831     901 ..     800     905 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0016
                    HHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHH CS
  Abhydrolase_1  56 tasvaddldrildalgddkltlvGhSmGGmial 88 
                    t  v++++++   + + ++++++G+S+GG++ l
     CCD25041.1 763 TEVVQKFIKMNEPHIDRKRVAIWGWSYGGFTTL 795
                    455788888888899999999********9976 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.016
                    HHHHHHHHC......THHHHS.....EEEEEEETTCSSSCH.HHHHHHHHC....HTSEEEEEEETCSSSH CS
  Abhydrolase_1 198 aklllrlre......lknvla.....ptlvisgtsDplvpp.kaledlaql....lpkkrlvvisdagHla 252
                    ++ l++ ++      +k+v         l+i+gt D  v + +++e+l++l    +++   ++++d+ H +
     CCD25041.1 831 DAPLNNEEGyrdisvVKDVEPfknlnRFLIIHGTADDNVHIqNSYEFLDKLnlagIRNYDMHIFPDSDHSI 901
                    3333333336666676666667777799*****999999998**********99999999******99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (931 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       893  (0.0498076); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 6642.68
//
Query:       CCD25042.1  [L=297]
Description: hypothetical protein NDAI_0E02250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-82  275.8   0.0    2.1e-82  275.0   0.0    1.4  1  Ribosomal_L5e    Ribosomal large subunit proteins 60S L5, and
    2.2e-31  108.6   1.3    2.2e-31  108.6   1.3    1.8  2  Ribosomal_L18_c  Ribosomal L18 C-terminal region
  ------ inclusion threshold ------
      0.018   15.3   0.4        1.4    9.1   0.0    2.8  3  Thr_synth_N      Threonine synthase N terminus
      0.028   15.0   1.2      0.062   13.9   1.2    1.6  1  Com_YlbF         Control of competence regulator ComK, YlbF/Y
      0.044   14.1   0.6       0.12   12.8   0.0    1.8  2  Ribosomal_L18p   Ribosomal L18 of archaea, bacteria, mitoch. 
      0.086   12.8   0.0       0.17   11.8   0.0    1.4  1  NAC              NAC domain
       0.12   12.5   0.0        1.8    8.7   0.0    2.3  2  Phage_holin_3_3  LydA holin phage, holin superfamily III


Domain annotation for each model (and alignments):
>> Ribosomal_L5e  Ribosomal large subunit proteins 60S L5, and 50S L18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.0   0.0   8.2e-86   2.1e-82       1     163 []      14     176 ..      14     176 .. 0.99

  Alignments for each domain:
  == domain 1  score: 275.0 bits;  conditional E-value: 8.2e-86
  Ribosomal_L5e   1 krfqvkfrrrregktdYyarkrliiqdknkyntpkyRlvVrvtnkdiicqiayakiegdkvlaaayskelpkygvkvgltnyaaaYatglllarrl 96 
                    +r+q+ frrrregktd+y+rkrl+ q k kyn+pkyRlvVr+tnkdiicqi++++i+gd vlaaays+elp+yg+++gltn+aaaYatgll+arr+
     CCD25042.1  14 SRYQTPFRRRREGKTDFYQRKRLVSQHKAKYNSPKYRLVVRFTNKDIICQIVSSTITGDIVLAAAYSHELPRYGITHGLTNWAAAYATGLLVARRT 109
                    6*********************************************************************************************** PP

  Ribosomal_L5e  97 lkklgldkiyegqeevtgeeynveeideekrafkaiLdvGLartttgakvfgalkgavdgglsiphs 163
                    l+klgld++y+g+eev+ge+  +e++++ +r+fk++Ld+GL+rtttga+vfgalkga+dggl+iphs
     CCD25042.1 110 LQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYIPHS 176
                    ******************************************************************7 PP

>> Ribosomal_L18_c  Ribosomal L18 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2         2   5.1e+03       5      15 ..      33      43 ..       7      52 .. 0.61
   2 !  108.6   1.3   8.6e-35   2.2e-31       3      95 .]     194     289 ..     192     289 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2
  Ribosomal_L18_c  5 rkrIfgkhvae 15
                     rkr++ +h a+
       CCD25042.1 33 RKRLVSQHKAK 43
                     33333333333 PP

  == domain 2  score: 108.6 bits;  conditional E-value: 8.6e-35
  Ribosomal_L18_c   3 vlrkrIfgkhvaeYmeeLkeedeekykkqFskyikkgieaddleelykkahaaIredpvkk...ekkekkevkkeskkykkkkltleqrkarvk 93 
                       lr++Ifg+hv++YmeeL+++dee++++ F+ y++++i+ad+le++y++ahaaIr+dp  k   +k +k+++++eskk+++ klt+e+r arv+
       CCD25042.1 194 LLRTYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIYTEAHAAIRADPAFKateKKFTKEQYAAESKKFRQVKLTKEERDARVA 287
                      689********************************************************988844588999999******************** PP

  Ribosomal_L18_c  94 qK 95 
                      +K
       CCD25042.1 288 AK 289
                      98 PP

>> Thr_synth_N  Threonine synthase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.8   4.6e+03      42      66 ..      36      60 ..      31      70 .. 0.74
   2 ?    9.1   0.0   0.00056       1.4      23      35 ..     166     178 ..     154     191 .. 0.82
   3 ?    3.1   0.0     0.043   1.1e+02      55      78 ..     220     243 ..     206     244 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.8
  Thr_synth_N 42 leelrklsYaelafevlklfiedei 66
                 l + +k +Y+   ++++ +f++++i
   CCD25042.1 36 LVSQHKAKYNSPKYRLVVRFTNKDI 60
                 5566778899999999999997777 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00056
  Thr_synth_N  23 AeDgGLyvPeeiP 35 
                  A+DgGLy+P++  
   CCD25042.1 166 ASDGGLYIPHSEN 178
                  99*******9754 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.043
  Thr_synth_N  55 fevlklfiedeipeedLkelieka 78 
                   e++k ++ d+i+++ L+++ ++a
   CCD25042.1 220 SELFKGYLADDIDADSLEDIYTEA 243
                  578899*************98876 PP

>> Com_YlbF  Control of competence regulator ComK, YlbF/YmcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.2   2.4e-05     0.062       8      64 ..     227     283 ..     225     294 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.4e-05
                 HHHHHHHSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTT----HHHHH CS
    Com_YlbF   8 LaeaIkeseeykeykeaeealeedeelqklikefkklqkelqekqmkgeelkeeekk 64 
                 La+ I  +     y ea++a+++d++ ++  k+f k q+ ++ k+ ++ +l++ee++
  CCD25042.1 227 LADDIDADSLEDIYTEAHAAIRADPAFKATEKKFTKEQYAAESKKFRQVKLTKEERD 283
                 56666667777779*************************999999888778887773 PP

>> Ribosomal_L18p  Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.5e-05      0.12      11      84 ..      35     112 ..      24     118 .. 0.75
   2 ?   -1.5   0.2       1.3   3.2e+03      63      79 ..     276     292 ..     256     296 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.5e-05
                     HHHHTTT--TTSSS-EEEEEE-SS-EEEEEE-TTT--EEEEECS-SCCCT....S-SSSCHHHHHHHHHHHHHHHCHH CS
  Ribosomal_L18p  11 hkRirkklsgtaerprlvvfrsnrhiyaQviddvkgktlasastlekelk....lkstknkeaakkvgeliAerakek 84 
                     ++  ++k + ++ + rlvv  +n+ i  Q++ ++    ++ a +  +el     ++   n +aa + g l+A+r+++k
      CCD25042.1  35 RLVSQHKAKYNSPKYRLVVRFTNKDIICQIVSSTITGDIVLAAAYSHELPrygiTHGLTNWAAAYATGLLVARRTLQK 112
                     333345556667799*****************98776666666666666555655667889999999*****998765 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.3
                     SSSCHHHHHHHHHHHHH CS
  Ribosomal_L18p  63 stknkeaakkvgeliAe 79 
                     +  ++e+ ++v+++iA 
      CCD25042.1 276 KLTKEERDARVAAKIAA 292
                     33334444445555554 PP

>> NAC  NAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.8e-05      0.17       4      22 ..     106     125 ..     106     127 .. 0.95

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.8e-05
         NAC   4 lrkalkklgl.keipgieeV 22 
                 +r++l+klgl ++++g+eeV
  CCD25042.1 106 ARRTLQKLGLdETYKGVEEV 125
                 699****************9 PP

>> Phage_holin_3_3  LydA holin phage, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0007       1.8      25      57 ..      54      86 ..      47     105 .. 0.90
   2 ?    1.0   0.0      0.19   4.8e+02       8      33 ..     199     224 ..     199     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0007
  Phage_holin_3_3 25 rfsikellleivvSgfvGllvfllceelglsql 57
                     rf+ k+++++iv+S  +G +v +++ + +l+ +
       CCD25042.1 54 RFTNKDIICQIVSSTITGDIVLAAAYSHELPRY 86
                     788899*******************99999876 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.19
  Phage_holin_3_3   8 llGGlvsylmrakkgrrrfsikelll 33 
                      ++GG vs  m++ + + +++++el+ 
       CCD25042.1 199 IFGGHVSQYMEELADDDEERFSELFK 224
                      58************999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.36
# Mc/sec: 2451.81
//
Query:       CCD25043.1  [L=303]
Description: hypothetical protein NDAI_0E02260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-61  206.1   0.2    5.3e-61  205.1   0.0    1.5  2  CtaG_Cox11      Cytochrome c oxidase assembly protein CtaG/Co
  ------ inclusion threshold ------
       0.03   13.8   0.1      0.044   13.2   0.1    1.1  1  DUF3629         Protein of unknown function (DUF3629)
      0.047   13.7   0.3       0.42   10.6   0.1    2.1  2  Phage_TAC_5     Phage XkdN-like tail assembly chaperone prote
      0.094   12.4   0.2       0.15   11.7   0.2    1.3  1  Ribosomal_S19e  Ribosomal protein S19e
       0.21    9.6   0.0        0.3    9.1   0.0    1.1  1  PRTP            Herpesvirus processing and transport protein


Domain annotation for each model (and alignments):
>> CtaG_Cox11  Cytochrome c oxidase assembly protein CtaG/Cox11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.2   4.2e+03     122     133 ..      68      79 ..      55     106 .. 0.49
   2 !  205.1   0.0   1.5e-64   5.3e-61       1     151 []     118     269 ..     118     269 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
  CtaG_Cox11 122 pvlFfidpelae 133
                 p+ F i++   +
  CCD25043.1  68 PLQFDINKLTRS 79 
                 444444443222 PP

  == domain 2  score: 205.1 bits;  conditional E-value: 1.5e-64
  CtaG_Cox11   1 avPlyrvfCeatGlggktekaaae..ksaavkvdeertevtveFdadvseklpwefkpeqrslevkpGetalafytaknksdkpiigqavysvaPeeaa 97 
                 avPlyr++C+ tG+gg + +++++  +++   vd+e+ +++v+F+++vs+ lpw+f p+qr++ v pGetalafy+akn+sdk+iig+a+ys++P eaa
  CCD25043.1 118 AVPLYRAICARTGFGGIPITDRRKftDDKLIPVDTEK-RIRVSFTSEVSQILPWKFVPQQREVYVLPGETALAFYKAKNNSDKDIIGMATYSISPGEAA 215
                 69**************999888776666678999999.6************************************************************ PP

  CtaG_Cox11  98 kyfnKieCFCFeeqkLkpgeevdlpvlFfidpelaedpelkkvkeitLsYtffe 151
                 +yfnKi+CFCFeeqkL++gee+d+pv+Ffidp++a+dp+++++++i+L+Ytff+
  CCD25043.1 216 QYFNKIQCFCFEEQKLAAGEEIDMPVFFFIDPDFASDPAMRNIDDIILHYTFFR 269
                 *****************************************************6 PP

>> DUF3629  Protein of unknown function (DUF3629)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   1.2e-05     0.044      59     126 ..      34      96 ..      10     103 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.2e-05
     DUF3629  59 drdvnkkkpystfkvdriqdmwqrsrigakeqnslrgyqpanfdvntdsnevisaldkvrrieerlki 126
                  + v k+ p st+ + r+  + qr +   +eq+      p +fd+n  ++  i+ l +++r+ee++k 
  CCD25043.1  34 RQTVLKRTPISTLPITRLYSLSQRLQ---QEQKN--EGIPLQFDINKLTRSQIQQLRNMKRVEEQRKK 96 
                 3567899**************99975...45554..347*************************9984 PP

>> Phage_TAC_5  Phage XkdN-like tail assembly chaperone protein, TAC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00012      0.42      19      58 ..      54      97 ..      35     107 .. 0.78
   2 ?    0.8   0.0      0.13   4.6e+02     106     122 ..     209     225 ..     192     237 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00012
                 --TT-B-T...TS-B--EEE----HHHHHHHHHHTB-----.-- CS
  Phage_TAC_5 19 askrlkde...kgkpvpfeikaiteeeieeirkectkkvkv.kG 58
                  s+rl++e   +g p++f i+++t  +i+++r+    +++  kG
   CCD25043.1 54 LSQRLQQEqknEGIPLQFDINKLTRSQIQQLRNMKRVEEQRkKG 97
                 567777765557889*****************988777663244 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.13
                  TSHHHHHHHHHHHHHHT CS
  Phage_TAC_5 106 LlpGEyaelankvqels 122
                  ++pGE a+++nk+q ++
   CCD25043.1 209 ISPGEAAQYFNKIQCFC 225
                  689**********9776 PP

>> Ribosomal_S19e  Ribosomal protein S19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   4.3e-05      0.15      56     120 ..      32     101 ..      26     103 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.3e-05
                     TS--TTSGG.GGS----SS-SSS-------THHHHHH......HHHTTSSS--SSS---SS-HHHHHTHHHH CS
  Ribosomal_S19e  56 ilRkvylrg.pvGverlrkvYGgkkrrgvrpshfvka......sgsvirkilqqLeklglvkkekkkgrrlt 120
                     ilR+  l+  p++   +++ Y+ ++r     +++ ++       ++++r+ +qqL +++ v++++kkgr ++
      CCD25043.1  32 ILRQTVLKRtPISTLPITRLYSLSQRLQQ--EQKNEGiplqfdINKLTRSQIQQLRNMKRVEEQRKKGRSIA 101
                     66665553337777777777777777333..22222211111157899*************999999**985 PP

>> PRTP  Herpesvirus processing and transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   8.3e-05       0.3       4     104 ..       7     108 ..       5     114 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 8.3e-05
        PRTP   4 LlavlsqvqelaldvellkycdPevllkelaklkkn...alkvlkLekkllpelkaQnalelsalsleLellLenlkeelelldealeefktkrdrkey 99 
                 ++ v +++++l+  + ll++c+  ++l+  + lk++   +l ++ L+ +l ++l++ ++ e  +l + ++ l +   ++l+ +++  e+ k+ r+ + y
  CCD25043.1   7 IAGVSGRINSLTSKILLLQRCNGDTILR-QTVLKRTpisTLPITRLY-SLSQRLQQEQKNEGIPLQFDINKLTRSQIQQLRNMKRVEEQRKKGRSIALY 103
                 56799*********************99.555666511166677776.589999999999**************************999999******* PP

        PRTP 100 Fekvl 104
                 F++v 
  CCD25043.1 104 FSSVA 108
                 *9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2339.55
//
Query:       CCD25044.1  [L=496]
Description: hypothetical protein NDAI_0E02270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-06   25.8   8.3    2.1e-05   24.5   8.3    1.7  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   8.3   1.2e-09   2.1e-05       1      27 [.      24      49 ..      24      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.2e-09
                SS-HHHHHCT---STSSSS-HHHHHCT CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkkln 27
                ++C+ Cr+ +v Cd+++P Cs+C+k+ 
  CCD25044.1 24 RSCIFCRRSHVVCDEGRP-CSRCIKRD 49
                59****************.*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1122  (0.0625802); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3699.90
//
Query:       CCD25045.1  [L=185]
Description: hypothetical protein NDAI_0E02280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-56  189.5   0.7    4.1e-56  188.6   0.2    1.6  2  NifU_N    NifU-like N terminal domain
  ------ inclusion threshold ------
      0.037   14.3   0.2      0.068   13.4   0.2    1.4  1  TSCPD     TSCPD domain


Domain annotation for each model (and alignments):
>> NifU_N  NifU-like N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.3   2.7e+03      65      81 ..      28      44 ..      26      47 .. 0.82
   2 !  188.6   0.2   4.6e-60   4.1e-56       2     128 ..      55     180 ..      54     181 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.3
                HHHHHHHHHHHHHTTSB CS
      NifU_N 65 saiAssslltelvkgkt 81
                s+i s  llt+ +k+kt
  CCD25045.1 28 SSILSRTLLTQSIKNKT 44
                67888899999999998 PP

  == domain 2  score: 188.6 bits;  conditional E-value: 4.6e-60
                 SCHHHHHHHHSSSSBSS-TTSSS--EEEEEEETTTTEEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHCCCCHHHHHHHHTCS CS
      NifU_N   2 ysdkvldhyknPrnvGvleeedakvgvgevgapacGDavrLqikvdeetdriedakFktfGCgsaiAssslltelvkgktleealkitnkeiaeelggl 100
                 y+ kv+dhy++PrnvG+l+++  +vg+g vgapacGD++rLqi+v+++t++ie++kFktfGCgsaiAsss++te+v+g+++++a++i+n++ia+el+ l
  CCD25045.1  55 YHPKVIDHYTHPRNVGSLDKKASNVGTGLVGAPACGDVMRLQIQVNDKTGIIENVKFKTFGCGSAIASSSYMTEMVNGMSINDAERIKNTQIAKELS-L 152
                 99***********************************************************************************************.* PP

                 CSSSCHCSCHHHHHHHHHHHHHHHHCTH CS
      NifU_N 101 pkeklhcsvlaedalkaavkkYkakkke 128
                 p++klhcs+laeda+kaa+++Yk+k+k+
  CCD25045.1 153 PPVKLHCSMLAEDAIKAAIQDYKSKRKQ 180
                 ************************9975 PP

>> TSCPD  TSCPD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   7.6e-06     0.068       7      49 ..      89     139 ..      86     149 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.6e-06
       TSCPD   7 Cs..reieievddk..liknvkfvg.GCngnlkg...iskLvegmkveevi 49 
                 C+  ++++i+v+dk  +i+nvkf   GC + + +   ++++v+gm+++++ 
  CCD25045.1  89 CGdvMRLQIQVNDKtgIIENVKFKTfGCGSAIASssyMTEMVNGMSINDAE 139
                 7633555666666577******9644**77765423378899****99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1424.12
//
Query:       CCD25046.1  [L=1387]
Description: hypothetical protein NDAI_0E02290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1336  (0.0745161); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.26s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 9423.86
//
Query:       CCD25047.1  [L=377]
Description: hypothetical protein NDAI_0E02300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-12   45.7   6.0    9.9e-12   44.6   6.0    1.7  1  PHD        PHD-finger
  ------ inclusion threshold ------
      0.013   15.1   0.6      0.027   14.1   0.6    1.5  1  PIP49_C    Protein-kinase domain of FAM69


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   6.0   1.1e-15   9.9e-12       1      50 [.      29      75 ..      29      77 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.1e-15
                SBTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD  1 rCavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50
                +C +Ckk +d++e +v CdgC++wfH +C+++p + ++k   +++C+ C+
  CCD25047.1 29 YC-ICKK-QDTGELMVGCDGCDDWFHFSCMRIPIK-YQKLVASFYCPYCQ 75
                69.****.9************************99.566667*******8 PP

>> PIP49_C  Protein-kinase domain of FAM69
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.6     3e-06     0.027     111     163 ..      90     142 ..      83     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3e-06
     PIP49_C 111 fiedkleeklseqkcekdedcsffdclskcdkeedrCsaevensnlaavCekl 163
                 ++ed+  + ++ +k+ ++++c+ +dc+  c ++++ Cs+++ ++ l+ v +kl
  CCD25047.1  90 TVEDETGDAIKVRKTLWKKKCRLEDCYEPCTERSKYCSRQHGKEFLQEVLSKL 142
                 678888888888999999***********************999999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1243  (0.069329); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2914.73
//
Query:       CCD25048.1  [L=447]
Description: hypothetical protein NDAI_0E02310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.031   14.3   0.2         12    5.9   0.0    3.2  3  BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
      0.036   14.9   2.3         88    4.2   0.0    3.8  3  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0    0.0014        12      39      67 ..     128     156 ..     122     199 .. 0.73
   2 ?    4.3   0.0    0.0046        41      30      87 ..     205     260 ..     178     275 .. 0.73
   3 ?    0.4   0.0     0.073   6.6e+02      44      69 ..     273     298 ..     266     327 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0014
    BBS2_Mid  39 tekvvslarlekerfayaleNGtvgvyek 67 
                  e ++ l++l++e+f++  +NG++g +  
  CCD25048.1 128 GEDIIKLVTLDSESFVALTANGSLGWFTT 156
                 5789*********************9975 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0046
    BBS2_Mid  30 eelvaeitetekvvslarlekerfayaleNGtvgvyekkerlWrvksknevvalaayd 87 
                 +el++e +e+   ++ +++++ +f+ +   G  + y+   + W+ ks+ +  +l++ +
  CCD25048.1 205 GELLKEWKEEGSSTQHSKINNVQFVGTDFVG--ACYDDCVKFWHLKSEDKKPKLILKE 260
                 5788888888888888888888887665555..47************99987777654 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.073
    BBS2_Mid  44 slarlekerfayaleNGtvgvyekke 69 
                 +++ l ++ f+++ + G ++v++ ++
  CCD25048.1 273 AMSPLIDTLFITGTNSGVIKVWDLRT 298
                 57788889999999999999998776 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1      0.01        91       8      37 ..     218     245 ..     209     246 .. 0.67
   2 ?    4.2   0.0    0.0098        88      24      38 .]     281     295 ..     267     295 .. 0.86
   3 ?    4.0   0.1     0.012     1e+02      10      37 ..     320     351 ..     312     352 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.01
                 ESSSSEEEEEEETTSSE....EEEE.ETTSEEEEE CS
        WD40   8 tGHssvtslafspdgaw....lasG.sdDgtvriW 37 
                 t Hs ++ +      ++    ++ G ++D  v++W
  CCD25048.1 218 TQHSKINNV------QFvgtdFV-GaCYDDCVKFW 245
                 568668888......77333334.3256******* PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0098
                 EEEEEETTSEEEEEE CS
        WD40  24 wlasGsdDgtvriWd 38 
                 ++++G+  g +++Wd
  CCD25048.1 281 LFITGTNSGVIKVWD 295
                 3679*99*******9 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.012
                 S.SS..EEEEEEETTSSE..EEEEETTSEEEEE CS
        WD40  10 H.ss..vtslafspdgaw..lasGsdDgtvriW 37 
                 H ++  v +l+fsp  a   l+ Gs  g v+ W
  CCD25048.1 320 HfDGeaVIDLKFSPTDATnfLTVGS-SGQVYHW 351
                 533356779*****99999888899.**99999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 3591.17
//
Query:       CCD25049.1  [L=932]
Description: hypothetical protein NDAI_0E02320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-65  219.3   0.0    1.3e-64  218.1   0.0    1.7  1  Pkinase      Protein kinase domain
      4e-39  134.4   0.0    6.6e-39  133.8   0.0    1.3  1  Pkinase_Tyr  Protein tyrosine kinase
      3e-09   36.6   0.0    5.5e-09   35.8   0.0    1.3  1  Kinase-like  Kinase-like
     0.0067   16.4   0.1      0.016   15.1   0.2    1.5  1  APH          Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.023   14.3   0.2      0.057   13.0   0.2    1.7  1  RIO1         RIO1 family
      0.098   12.0   0.6       0.31   10.4   0.6    1.8  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.1   0.0   4.5e-68   1.3e-64       3     264 .]      71     341 ..      69     341 .. 0.90

  Alignments for each domain:
  == domain 1  score: 218.1 bits;  conditional E-value: 4.5e-68
                 EEEEEEEESSEEEEEEEETT..........TTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHH CS
     Pkinase   3 kleklGeGsfGkVykaveke..........tgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladll 89 
                   +++G+G+fGkV  + +k+           +k+vA+K ik++ ++k++    k+ rEi+ lk+l+hpniv+l ev+++++++ +vley++gge+ +++
  CCD25049.1  71 IGSTIGQGEFGKVKLGWSKNppssppnnlgISKQVAIKLIKRDAISKDSSkeLKIYREINALKHLSHPNIVKLEEVLQNSRYIGIVLEYASGGEFYRYI 169
                 6789**********9997753333332222589*********9988776655789******************************************** PP

                 HHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCB.SHHHHHHHHHH CS
     Pkinase  90 erkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keney.skkvDvWslGv 185
                 +rk+ l+e+ a ++++q+++g++y+Hskg++HrDlK eN+L+d++++l itDFG+++e+ s+++ +++ +g++ Y APE++ ++++y  +k+D+Ws+G+
  CCD25049.1 170 QRKKRLKETAACRLFAQLINGVHYIHSKGLVHRDLKLENLLLDKHENLVITDFGFVNEFYSHNElMKTSCGSPCYAAPELViSTKPYeARKADIWSCGI 268
                 *************************************************************9999**************99999***99********** PP

                 HHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 186 ilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ily +l+g  p+ +++g+     + d++ +++     tk  l+ ++ i++  +dll+k+l  dp++R+t++++ +h++l
  CCD25049.1 269 ILYAMLAGYLPWDDDSGNP----DGDDISRLYYY--ITKTPLKFPDYINPIPRDLLRKILVSDPRRRITMKQIEKHEWL 341
                 *************777777....55554444444..456789999*********************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   2.2e-42   6.6e-39       3     257 ..      71     337 ..      69     338 .. 0.86

  Alignments for each domain:
  == domain 1  score: 133.8 bits;  conditional E-value: 2.2e-42
                  EEEEEEEESSEEEEEEEEET......TTTSSEEEEEEEEESTTS...SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg......ekekkevkVavKtlkeea...teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkf 91 
                  +g+++G+G+fGkV  g  k+      ++   + +Va+K +k++a   +++++ ++++e++ +k+l+hpnivkl  v  +++ + iv+ey++gG++  +
   CCD25049.1  71 IGSTIGQGEFGKVKLGWSKNppssppNNLGISKQVAIKLIKRDAiskDSSKELKIYREINALKHLSHPNIVKLEEVLQNSRYIGIVLEYASGGEFYRY 168
                  5789***************99998887888899*******98651114455778999***************************************** PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHH CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksD 187
                  +++k  ++l+ +  +++ +q+ +G++y++sk lvHrdl   N Ll++++   i+DfG  ++ ++++e   k+++     + apE + ++k     k+D
   CCD25049.1 169 IQRK--KRLKETAACRLFAQLINGVHYIHSKGLVHRDLKLENLLLDKHENLVITDFGFVNEFYSHNELM-KTSCGS-PCYAAPELVISTKpyEARKAD 262
                  ***8..99******************************************************7777665.444544.579****987777644679** PP

                  HHHHHHHHHHHHTTSSGT......TTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 188 vWsfGvllwEiftlgesp......ypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  +Ws G++l+ ++  g  p       p+ ++ + l ++ +++ l+ p+++++   +l++k + +dp++R t++++ +
   CCD25049.1 263 IWSCGIILYAMLA-GYLPwdddsgNPDGDDISRLYYYITKTPLKFPDYINPIPRDLLRKILVSDPRRRITMKQIEK 337
                  ***********99.999933333333344444556668889999******999*******************9975 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.8e-12   5.5e-09     136     253 ..     170     283 ..     163     297 .. 0.83

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.8e-12
  Kinase-like 136 ethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve...kgfaPpEllgsrggytrknktkmthk 230
                  +++k+l++ a   l +qli+ + ++++kglvh +++ +nllld++  l++++f+       +  l ++      +a pEl+ s + y+         k
   CCD25049.1 170 QRKKRLKETAACRLFAQLINGVHYIHSKGLVHRDLKLENLLLDKHENLVITDFGFVNEFYSHNELMKTScgsPCYAAPELVISTKPYEA-------RK 260
                  5678888888888889************************************9876665555555333324499*********777776.......67 PP

  Kinase-like 231 ldaWqlGlviyriwclklPltla 253
                   d W  G+  y + + +lP + +
   CCD25049.1 261 ADIWSCGIILYAMLAGYLPWDDD 283
                  8******************9976 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   5.4e-06     0.016     164     196 ..     195     225 ..     164     226 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.4e-06
                 S-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 164 lptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                  +++l+H+Dl++ Nll+d++++ v  + Df+++
  CCD25049.1 195 HSKGLVHRDLKLENLLLDKHENLV--ITDFGFV 225
                 5789**************999999..9999986 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.2   1.9e-05     0.057      50     150 ..     120     223 ..     103     235 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHHHHHHHHTT.--S--EEEEETTE.EEEE--EETTEEGGBHHHCG.-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT. CS
        RIO1  50 lvklwaekEfrnLkrleeag.vpvPkpielkrhv.lvmefigedgvaapklkdve.e..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded. 142
                   +l   +E+++Lk l++ + v+  ++++  r + +v+e+ +  g + ++  + + +  e+ a +l++++++ ++ +    glvH DL   N+l+d+  
  CCD25049.1 120 SKELKIYREINALKHLSHPNiVKLEEVLQNSRYIgIVLEYAS--GGEFYRYIQRKkRlkETAACRLFAQLINGVHYIH-SKGLVHRDLKLENLLLDKHe 215
                 455566678888888877765677777777666668999998..444433333321233778889999***9888777.9****************998 PP

                 EEEE--GT CS
        RIO1 143 kvviIDvs 150
                 ++vi D++
  CCD25049.1 216 NLVITDFG 223
                 99999986 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6    0.0001      0.31     104     164 ..     164     220 ..     101     223 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0001
         Kdo 104 dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwli 164
                 +   ++++ ++l+e+   +l+ ++   ++ +h+ g+ H+dl   n+ll+++e    ++++ 
  CCD25049.1 164 EFYRYIQRKKRLKETAACRLFAQLINGVHYIHSKGLVHRDLKLENLLLDKHE----NLVIT 220
                 456778887779999999999999999**********************998....55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (932 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       881  (0.0491383); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 6670.29
//
Query:       CCD25050.1  [L=433]
Description: hypothetical protein NDAI_0E02330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-61  207.1   2.0    5.2e-59  199.9   2.0    2.0  1  Oxysterol_BP  Oxysterol-binding protein


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.9   2.0   2.9e-63   5.2e-59       4     357 ..      16     369 ..      11     382 .. 0.86

  Alignments for each domain:
  == domain 1  score: 199.9 bits;  conditional E-value: 2.9e-63
                   CCHTTSTT-BCCCS---GGGEEEEEHHHHHHHCCTTCHHHH................HHHC.SSHHHHHHHHHHHHHHCCCGCT......STSSSEE CS
  Oxysterol_BP   4 silkkciGkDLskislPvffneplSlLqrlaedleyselLd................kaakeddsleRlayVaaFalSsyasti......krrlkKP 78 
                   si +  ++ DLs++s P f++ p+Sl +  + + e+++l+                 ++  e+ ++ R++ V+++++S+++s++      +++ kKP
    CCD25050.1  16 SIAS--FNGDLSSLSAPPFILAPISLSEFSQYWAEHPDLFLdpsfinkdnyanylgaEIECESPEMTRMLSVTKWFISTLKSQYcsrnesMGSEKKP 110
                   4555..899******************************996777777777777764333466678**********************99999**** PP

                   E---TT-EEEEEETT......CEEEEEEEEEETTTTEEEEEEEE..CTEEEEEEEEEEEEE-SS.EEEEEE-SEEEEEEEEESEEEEEEE--EEEEE CS
  Oxysterol_BP  79 FNPlLGEtfelvred......kgfrfiaEQVsHhPpvsAfhaes..egweldgeikvkskflgk.slevkpeGtahlellkksgehYtwtkpttivh 166
                   +NP+LGE+f  ++e+       ++ +++EQVsHhPpv+A+ + +  ++++l+g+ +vk  f+    l vk+ G++ le+ +  +e++ +t p ++++
    CCD25050.1 111 LNPFLGEVFVGKWENkdhpefGETVLLSEQVSHHPPVTAYTIFNdkNKVKLQGYNQVKATFTKSlMLTVKQYGHTLLEV-N--DESFLITPPPLHIE 204
                   *************885676664558*****************998899*************965256799999999999.5..8************* PP

                   -TTTTS-EEEEEEEEEEEETTT--EEEEEEE---SSS---SSEEEEEEEE......TTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT.-... CS
  Oxysterol_BP 167 niivgklwvelsgeveitnhstgdkakleFkkkglfsskksnkvegkvkd......kkkevlyeisGkwdeelyikkkktekkeeeedasek.s... 253
                   +i++++++vel g+++i+ +stg  +++eF+ +g+fs +k+n++++++++      +k++ ly+isG+w++  +i k++++++    da +      
    CCD25050.1 205 GILMASPFVELEGKSYIQ-SSTGMLCVVEFSGRGYFS-GKKNSFKARIYKdaadskDKENALYTISGQWSGISKIVKNNSKEEVLFYDAGKVaAehl 299
                   ******************.68***************5.89*********778888777799**********99996666555555555444442568 PP

                   BSXXGCGSSTTBCCCCCCH-----...GGG--HHHHCCT---.TTGGS-TTBGGG-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT.---- CS
  Oxysterol_BP 254 kvkekeeqeefeseklWkasplpkaeeyygftkfavtlNeieekekslaptDsRlRpDqraleegdideAeeeKkrlEekQRerrkereekk.ewkp 349
                    vk+ eeq+  es++ W++                v++                      a+  gd+d  ++ K++lEe+QRe rk +e+k+ +w+ 
    CCD25050.1 300 YVKPLEEQHPLESRRAWQH----------------VAE----------------------AITLGDFDLIAKTKTELEESQRELRKVEEAKGiSWQR 358
                   9******************................888......................8999***********************9777679*** PP

                   SSEEEEE...T CS
  Oxysterol_BP 350 kwFekek...d 357
                   +wF+ ++   +
    CCD25050.1 359 RWFHDVDyseE 369
                   ***99885432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3176.79
//
Query:       CCD25051.1  [L=450]
Description: hypothetical protein NDAI_0E02340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-93  314.2  43.6      2e-93  314.0  43.6    1.0  1  Nop53     Nop53 (60S ribosomal biogenesis)
  ------ inclusion threshold ------
      0.067   13.3  10.8       0.79    9.9   1.4    2.8  2  W2        eIF4-gamma/eIF5/eIF2-epsilon
        1.7    9.3   7.9       0.35   11.5   3.3    2.5  2  TAF8_C    Transcription factor TFIID complex subunit 8 C-term


Domain annotation for each model (and alignments):
>> Nop53  Nop53 (60S ribosomal biogenesis)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  314.0  43.6   3.3e-97     2e-93       1     398 []      17     418 ..      17     418 .. 0.86

  Alignments for each domain:
  == domain 1  score: 314.0 bits;  conditional E-value: 3.3e-97
       Nop53   1 SRkgKkaWRKniDitdveegLeevreeeritGg.vlsekkdeeLFvvDtkgdeelkkka..rkkkkkpLksdeiL...aqrsavpavsakrkrkka.kk 92 
                 SRkgKkaWRKniD+td+e+++e++ e+e+ +G  ++s+ +d +LF+vD +gd+ lk+k+  rk++kk+Lks+eiL   +++s++ av++ +++ ++ +k
  CCD25051.1  17 SRKGKKAWRKNIDLTDIEKSIETKIEQEISHGVsDISTLQDTALFQVDIEGDNVLKNKLikRKQIKKNLKSKEILdsiKTTSKIGAVTHRNHHLTEdEK 115
                 9*******************************99*********************88889****************9999******9977766655755 PP

       Nop53  93 kkkkkv...skkelarlrklakrkkkgekkkeksakeakkksgsyDlW................aeeeeeeeeekkk..........tklstlekkkkv 162
                 + kkkv   skkel++l +la+r + + k k++ ak++ +ks+s+                   +                       ++st++++ ++
  CCD25051.1 116 LAKKKVqgvSKKELNKLLALAGRVQGEYKLKARLAKDGLVKSQSFVFMgfkkilkvqlpsgiklD-----------AsvkekipeelLTMSTTSWSVAS 203
                 555555577***********999998866669999*******99999955555555555544331...........0444445555689********** PP

       Nop53 163 krPktlkkkpislsalpavevphaGkSYNPsfedhqellqkaveaEkkrekeeeklerkrekiaekaataeareeelseekdegleeeeeeeeeeeeee 261
                 ++P+tlkk+p++l + +  e+phaGkSYNP+ +++++l++k++++Ek +e+++ +le++re+i++  +t++++eee+s+ ++    +eee +e+e++  
  CCD25051.1 204 VKPETLKKAPLQLREFQ--ELPHAGKSYNPDKKEWSSLIDKEYQVEKIKEENRIALEEYRERIKHLIETLDDNEEEESSNDE----KEEEFDEDEDNT- 295
                 ****************9..********************************************************8666666....333333322222. PP

       Nop53 262 eeeeeeseeeeklnapvkkkpkrKTkaqRnkekrrkeeekeekeekkekkkeaqlerlkeikkevaekekeraeaaearkkekrkkkaekkklkrrkl. 359
                       s +  kl++++++++k+KTk+qRnk+kr++e++k+++e+kk+k++ ++le+l++i++ev  k  e ++++  +        a  k  k++k+ 
  CCD25051.1 296 ------S-DVVKLSINTPVQNKKKTKYQRNKAKRHEEKMKLQQELKKLKQQVHELEKLENIEEEVLLKFIEDKNKK--Q------TTAGGKIKKTKKFg 379
                 ......2.25789999*************************************************88888876662..2......22345567899999 PP

       Nop53 360 gkhkvpepdlevqlsdELsdSLRtLKPeGNLlkDrfksL 398
                 +k+ + +++lev++sdELsdSLR+LKPeGNLl+D++++L
  CCD25051.1 380 TKYGLLDERLEVKFSDELSDSLRKLKPEGNLLYDNVRKL 418
                 9***********************************998 PP

>> W2  eIF4-gamma/eIF5/eIF2-epsilon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.4   0.00081       4.8      54      78 ..     253     280 ..     234     281 .. 0.76
   2 ?    9.9   1.4   0.00013      0.79      16      65 ..     329     378 ..     312     381 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00081
          W2  54 g...kkkvrkkaepfvewLeeaeeeeee 78 
                 +    +++r++++ ++e L++ eeee++
  CCD25051.1 253 NriaLEEYRERIKHLIETLDDNEEEESS 280
                 1466779*******************97 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00013
          W2  16 keellkllakilkaLYdeDileEeailkWgekkskaekgkkkvrkkaepf 65 
                  ++ lk+l + +++L +++ +eEe++lk+ e+k+k++++     kk+++f
  CCD25051.1 329 LQQELKKLKQQVHELEKLENIEEEVLLKFIEDKNKKQTTAGGKIKKTKKF 378
                 344778888899999999**************999877744555555555 PP

>> TAF8_C  Transcription factor TFIID complex subunit 8 C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         3   1.8e+04      35      47 ..      74      86 ..      70      87 .. 0.64
   2 ?   11.5   3.3   5.9e-05      0.35      17      49 .]     304     336 ..     303     336 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3
      TAF8_C 35 aaeqsrlaekaLr 47
                ++ +++++ k+L+
  CCD25051.1 74 KLIKRKQIKKNLK 86
                5556777777775 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 5.9e-05
      TAF8_C  17 rTpvyneretdpkkirekaaeqsrlaekaLrkL 49 
                 +Tpv n+++t +++++ k+ e++++ ++ L+kL
  CCD25051.1 304 NTPVQNKKKTKYQRNKAKRHEEKMKLQQELKKL 336
                 8*****************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3285  (0.183223); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.48
# Mc/sec: 2820.54
//
Query:       CCD25052.1  [L=173]
Description: hypothetical protein NDAI_0E02350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-15   55.3   0.0    8.5e-15   54.9   0.0    1.3  1  ACPS      4'-phosphopantetheinyl transferase superfamily


Domain annotation for each model (and alignments):
>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0   4.8e-19   8.5e-15       1     104 [.      15     143 ..      15     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 54.9 bits;  conditional E-value: 4.8e-19
                 EEEEEEEEHHHHH.HHH----..............-HHHHHS-HHHHHHHTT...--HHHH...HHHHHHHHHHHHHHHHHTTS-SSS..S--GGG... CS
        ACPS   1 gvGiDieklsrlrkrvkrrga..............kilkrifteeErkllks...sdeear...aelfarlWaaKEAllKalgpglrk..lldfks... 74 
                 g+G+Di++l+r+++ + +  +              +i ++++++ Er+ ++s   +   +    a+++a++Wa KEA lKal++ +++   ++ ++   
  CCD25052.1  15 GIGTDIVYLPRFQRLLMKYTNdddvyaiksssaldRINDKFMHPIERATFRSlanE---SLskrAKYLAGVWATKEATLKALHCYIPSehIPPAQViyt 110
                 79***********764444449******************************5544...444559*********************7776666666999 PP

                 ...-EEEE-TTS-EEEE-S-SSEEEEEEEE-.. CS
        ACPS  75 ...ievledstgrptlellseakkkawkleslk 104
                        ++stg+p+l++++++  + + +++  
  CCD25052.1 111 kllYKTNNTSTGSPQLQFDKNFSTTTPLYSQFF 143
                 99999999*********8888888887776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       337  (0.0187964); expected 358.6 (0.02)
Passed bias filter:                      268  (0.0149478); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1343.35
//
Query:       CCD25053.1  [L=255]
Description: hypothetical protein NDAI_0E02360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1938  (0.108093); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 1692.83
//
Query:       CCD25054.1  [L=275]
Description: hypothetical protein NDAI_0E02370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-37  129.5   1.5    2.2e-36  125.6   1.5    2.0  1  APG5      Autophagy protein Apg5


Domain annotation for each model (and alignments):
>> APG5  Autophagy protein Apg5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   1.5   1.2e-40   2.2e-36       1     227 [.      83     268 ..      83     269 .. 0.90

  Alignments for each domain:
  == domain 1  score: 125.6 bits;  conditional E-value: 1.2e-40
        APG5   1 WhlPiGvlyDlltaseeesksaasseaiseknlPwrLtlhfkeypenellpldageeslkdsfinslKeAdfirngsakkvmnLskedqeqLWqsvknh 99 
                 W++P+GvlyD++  ++  ++ + +   ++ +   wr+ l + +  +++++p+ +g +++++++++++K+ +fi++gs+k++m++s+++ + +W+s++++
  CCD25054.1  83 WNYPTGVLYDIMNTKDVITAARDT---NHLN--MWRINLTCGSQVPRNVIPIIEGTKQIEKYWMHQWKQVCFILRGSSKQIMSISRKEGQSFWESILRR 176
                 ***********9888877654433...3344..5********877777*************************************************** PP

        APG5 100 dldkfwsinskllpspekkkvreiPiriylpdankdqtesekviqelvpplkedgqpqtLgdllsellpelfpskkkkekasssekeegsaaelakvli 198
                 d+++f++i+ +++p+    k r iP+ i+++d         k+iq++ p l++dg ++ + ++ + l                        ++++ ++ 
  CCD25054.1 177 DMETFNNISTRIIPK----KARFIPVVIHIND---------KFIQPVAPSLNDDGIENKVINITEGL----S-------------------SSEIAIIS 239
                 *************98....67*********66.........68************999998888888....1...................23468*** PP

        APG5 199 qGievpleaplawlaanlsypDgFlhivv 227
                 +G+++p +++l++++  + ++DgFlh+++
  CCD25054.1 240 HGVVIPKKSSLKEVYDRFLSFDGFLHLII 268
                 ***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2040.19
//
Query:       CCD25055.1  [L=534]
Description: hypothetical protein NDAI_0E02380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-10   37.9   0.2    7.2e-10   37.9   0.2    2.2  2  SGT1      SGT1 protein


Domain annotation for each model (and alignments):
>> SGT1  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.2     4e-14   7.2e-10      17     227 ..      50     258 ..      36     268 .. 0.83
   2 ?   -6.5  12.3         1   1.8e+04     471     563 ..     369     467 ..     355     497 .. 0.55

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 4e-14
        SGT1  17 keeeklqelleeilakvapllveYiWqkdp.FnLkvrtekgdlpahlgGvtkfGdnieD.EWFiVyLlkeitkef.pelvarvedndgeflLieaaevl 112
                 ++ +k++ +l++++a++++  + Y W + +  +++++   +d ++ + G++   dni+  E  +V +l+e++ ++ ++l ++++ +dg+ +L e  e++
  CCD25055.1  50 ETFAKVEGILQQVQANIQEWNTLYPWSEYNgISMELKYM-NDGLPYIFGQLCEEDNIQNeESLVVAMLQEVSLQLgSQLFIKISATDGDNILAEFNECI 147
                 556677888899999999999999998754255555553.5667789**********86268999*******99835799******************* PP

        SGT1 113 PkWlnPdtsenrvfiykGelhiipksskssevelkakepslsqalellsknpeetlasesiqsaikkrl.kgYpekikeslhrahvyvP.asvaavLkq 209
                 P+  +   ++nr +iy+G+  +ip+   + +       ++ ++ale+l+k p +++  ++ +++i+ ++ + +p+   ++l +    +  +   ++Lk 
  CCD25055.1 148 PEEYEYPVANNRFWIYEGKFVMIPTYFYEGR------GLKPNEALEFLTKAPFKCIEIDKLSQCIRDKIiNPHPNATFAELGKLMLVIEdQDFLTILKD 240
                 *************************999997......78889***********************9997255799999999998888852568899999 PP

        SGT1 210 rPsLvapAVqaFylRdpv 227
                 + ++++  V++  + ++ 
  CCD25055.1 241 NSQIISYLVKSLIKDEIT 258
                 999999888877665555 PP

  == domain 2  score: -6.5 bits;  conditional E-value: 1
        SGT1 471 dsflkalekllgskieeeldsddldedssedsdeedeedeeeeea.......eeeskeeekeslksYmdqmdeELaqttvgksFekkkkkkekakkkee 562
                 ++ + +l ++++s++++e +++ l+e++ +++d+ede ++e+e +       e+e+ +  ++   ++  +    L++ +++ +F k+++kke++  + +
  CCD25055.1 369 EELMDKLGNFFKSDMDKEFNDSSLKENKLSNVDSEDEFSDEREGNdqakkyfEDENISIDEDDFFEFFLKEALKLKEEEIE-TFRKQDSKKEQTVGDLQ 466
                 667788888888888888888777755555555555544444422111122322222222222222332333335555553.56666655554444333 PP

        SGT1 563 k 563
                 k
  CCD25055.1 467 K 467
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1321  (0.0736795); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3909.69
//
Query:       CCD25056.1  [L=883]
Description: hypothetical protein NDAI_0E02390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-69  231.7   0.0    1.5e-68  231.0   0.0    1.3  1  Pkinase        Protein kinase domain
    1.1e-37  129.8   0.0    1.7e-37  129.1   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
    4.1e-09   36.2   0.0    7.6e-09   35.3   0.0    1.4  1  Kinase-like    Kinase-like
    0.00011   21.2   0.0    0.00011   21.2   0.0    3.1  2  Haspin_kinase  Haspin like kinase domain
  ------ inclusion threshold ------
      0.093   12.1   0.0       0.37   10.1   0.0    1.8  2  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.0   0.0   4.2e-72   1.5e-68       1     264 []      38     284 ..      38     284 .. 0.95

  Alignments for each domain:
  == domain 1  score: 231.0 bits;  conditional E-value: 4.2e-72
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 y+ l ++GeGsfGkVy a ++ t+++v++K+ +k++       +++rE+ ++++++ p+i +lyev+ +++++++ +ey++g++l d++   + ++++ 
  CCD25056.1  38 YKILDQIGEGSFGKVYLASHRLTHCKVVLKTSNKSDP------NIVREVFYHRQFDYPYITQLYEVIVTESKVWMAQEYCPGKDLYDHVLSLQRVPSSA 130
                 67899**************************999854......589******************************************998899***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkppf 197
                 + ++++qi+ ++ y Hs +++HrDlK eNiL+d++g+ K+tDFG+ +e  ++++l++++gt  Y+APE++k+++y + k+D+WslGvily++l+g++pf
  CCD25056.1 131 CIELFTQIVGAVYYAHSLNCVHRDLKLENILLDKNGNAKLTDFGFTRECMTKTSLETICGTTVYMAPELIKRESYdGFKIDIWSLGVILYTMLNGSMPF 229
                 **********************************************************************999999*********************** PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                  +++++++ +k+++++             + +++ +se+akdll kll+kdp++R++++e+l+hp+l
  CCD25056.1 230 DEDDETKTEWKIMNEM------------PVFNDTILSEDAKDLLIKLLSKDPNERPSMQEILHHPFL 284
                 *999999888888883............23344557*****************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.0   4.9e-41   1.7e-37       3     257 ..      40     280 ..      38     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 4.9e-41
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  + +++GeG+fGkV+ ++ +     +++kV++Kt +++       ++++e+   ++++ p i +l+ v++ e+++++  ey++g dL +++ +   +++
   CCD25056.1  40 ILDQIGEGSFGKVYLASHR----LTHCKVVLKTSNKS-----DPNIVREVFYHRQFDYPYITQLYEVIVTESKVWMAQEYCPGKDLYDHVLSL--QRV 126
                  6789************999....999******99432.....3568*******************************************9997..99* PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.sksDvWsfGvllwE 197
                    +  +++ +q+  ++ y +s ++vHrdl   N+Ll++n  +k++DfG +r+ +++ +    e+      +mapE +k++++   k D+Ws Gv+l+ 
   CCD25056.1 127 PSSACIELFTQIVGAVYYAHSLNCVHRDLKLENILLDKNGNAKLTDFGFTRECMTKTSL---ETICGTTVYMAPELIKRESYDgFKIDIWSLGVILYT 221
                  *****************************************************555444...34445667***********97479************ PP

                  HHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 198 iftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  +++ g++p+ + +++++  k+ ++  + + +  +e+ ++l+ k +++dp+eRp+++e+++
   CCD25056.1 222 MLN-GSMPFDEDDETKTEWKIMNEMPVFNDTILSEDAKDLLIKLLSKDPNERPSMQEILH 280
                  *99.*****************************************************976 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   2.1e-12   7.6e-09     149     288 .]     134     272 ..     113     272 .. 0.82

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 2.1e-12
  Kinase-like 149 lTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriw 244
                  l  q++  + + +++  vh +++ +n+lld++g  +l++f+  +   tk  l +++    +  pEl+ +   y         +k+d W lG+  y + 
   CCD25056.1 134 LFTQIVGAVYYAHSLNCVHRDLKLENILLDKNGNAKLTDFGFTRECMTKTSLETICgtTVYMAPELIKR-ESY-------DGFKIDIWSLGVILYTML 223
                  445789999999****************************************999977779*****987.444.......56**************** PP

  Kinase-like 245 clklPltlateeakeew.......kfklckkipekvkaLlkkfLqlsqedR 288
                     +P++++  e k ew        f+     +e  k Ll+k+L  + ++R
   CCD25056.1 224 NGSMPFDEDD-ETKTEWkimnempVFN-DTILSEDAKDLLIKLLSKDPNER 272
                  *******985.6789996665553332.23568888888888888877776 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.2e-08   0.00011     206     256 ..     129     178 ..     111     189 .. 0.84
   2 ?  -12.3  13.5         5   1.8e+04      52      78 ..     446     472 ..     366     598 .. 0.60

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.2e-08
  Haspin_kinase 206 kqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRl 256
                    + + ++f qiv  +y a  +++  HRdL+l+niL+dkn+n  l d+   R 
     CCD25056.1 129 SACIELFTQIVGAVYYAH-SLNCVHRDLKLENILLDKNGNAKLTDFGFTRE 178
                    679999*********995.7999***********************99885 PP

  == domain 2  score: -12.3 bits;  conditional E-value: 5
  Haspin_kinase  52 vsrdkikkklrnsesllslnsqeevkd 78 
                    vs++ +  k +  +++  + +q++ ++
     CCD25056.1 446 VSKETTPGKNNIFKKMSKFFKQKKYLN 472
                    555555555555555555555554433 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0001      0.37     114     166 ..     125     173 ..     111     184 .. 0.74
   2 ?   -1.6   0.0       0.4   1.4e+03      58      78 ..     311     331 ..     297     351 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0001
         Kdo 114 elaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 +++ +   +l+ ++  ++   h+++  H+dl   nill++++    ++ l D+
  CCD25056.1 125 RVPSSACIELFTQIVGAVYYAHSLNCVHRDLKLENILLDKNG----NAKLTDF 173
                 445555556677777788889*******************99....5666666 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.4
         Kdo  58 avrEfrllkrLeeagvavpkp 78 
                 +  E +llk+L++ g+++  +
  CCD25056.1 311 SKLERKLLKNLKRTGFDTQAM 331
                 567999999999999998643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.37
# Mc/sec: 7083.60
//
Query:       CCD25057.1  [L=434]
Description: hypothetical protein NDAI_0E02400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-32  109.8  19.1    4.2e-06   27.4   0.6    7.3  7  WD40           WD domain, G-beta repeat
    1.9e-05   24.9   0.9       0.72   10.2   0.1    3.9  3  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    0.00013   20.9   0.8        1.8    7.2   0.0    4.1  4  Nucleoporin_N  Nup133 N terminal like
  ------ inclusion threshold ------
      0.047   13.0   0.0        4.7    6.5   0.0    2.6  2  WD40_like      WD40-like domain
       0.13   12.2   0.1       0.29   11.1   0.1    1.5  1  DUF4298        Domain of unknown function (DUF4298)
        1.5    8.7   4.3       0.49   10.2   0.5    2.1  2  SprB           SprB repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   1.1   4.7e-09   1.4e-05       2      38 .]     113     151 ..     112     151 .. 0.92
   2 !   15.7   0.0   6.9e-06     0.021       5      38 .]     159     193 ..     155     193 .. 0.89
   3 !   27.4   0.6   1.4e-09   4.2e-06       4      38 .]     200     235 ..     197     235 .. 0.94
   4 !   22.2   0.1   6.1e-08   0.00018       4      38 .]     242     277 ..     239     277 .. 0.74
   5 !    6.7   0.1    0.0049        15       3      33 ..     283     313 ..     281     318 .. 0.78
   6 !    9.2   0.0   0.00076       2.3      12      38 .]     333     360 ..     322     360 .. 0.77
   7 !   10.5   0.0   0.00031      0.92      13      37 ..     385     409 ..     367     410 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 4.7e-09
                 EEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 
                 ++ r++ GH ++v+++a  + d+ w+++Gs D t++iWd
  CCD25057.1 113 KLKRVINGHlGWVRCVAvDPIDNEWFVTGSNDATIKIWD 151
                 6778999**********98899999*************9 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 6.9e-06
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  tl GH   v+++a s  +++++s+s+D+ v+ Wd
  CCD25057.1 159 LTLAGHaMTVRDIAISERHPYMFSASEDKLVKCWD 193
                 5788**666*************************9 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 1.4e-09
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +r + GH s+v+s++ +p  +++a++++D  vr+Wd
  CCD25057.1 200 IRDYHGHlSGVHSVDIHPTLDLIATAGRDSVVRLWD 235
                 67899******************************9 PP

  == domain 4  score: 22.2 bits;  conditional E-value: 6.1e-08
                 EEEEESS.SS...EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ss...vtslafspdgawlasGsdDgtvriWd 38 
                 + tl GH s+   v++l   p  + ++s+s D t+r+Wd
  CCD25057.1 242 VMTLIGHkSPinkVHCL---PVDPQIVSCSTDATIRLWD 277
                 67999**7774445555...55555778999*******9 PP

  == domain 5  score: 6.7 bits;  conditional E-value: 0.0049
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgt 33 
                   ++lt H +sv++++f+p    ++s+s    
  CCD25057.1 283 SRKVLTHHkKSVRDMSFHPREFSMVSAS-TDD 313
                 56789999999*******9988888888.444 PP

  == domain 6  score: 9.2 bits;  conditional E-value: 0.00076
                 S..EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 s..vtslafspdgawlasGsdDgtvriWd 38 
                 s  ++sl++++d+ +  +G+d+gt+ ++d
  CCD25057.1 333 SgiINSLSVNQDNVLC-AGGDNGTLSFYD 360
                 2457***999999996.6999****9998 PP

  == domain 7  score: 10.5 bits;  conditional E-value: 0.00031
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                 + +  f++ g  l++G  D++++iW
  CCD25057.1 385 ILCSTFDQTGLRLITGETDKSIKIW 409
                 6666799999999***66******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.064   1.9e+02      21      75 ..     103     160 ..      93     176 .. 0.73
   2 !   10.2   0.1   0.00024      0.72       5      89 ..     217     299 ..     213     302 .. 0.84
   3 !    8.2   0.0     0.001         3      19      79 ..     314     373 ..     304     391 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.064
  ANAPC4_WD40  21 vfRlngqrvwtl..eedkedsevrsLaWkp.dgklLavaysdgevrlldaesgkvvhs 75 
                   +R +++  w+l    +++ + vr++a  p d++ ++ + +d ++++ d  +g++  +
   CCD25057.1 103 SQRPEWHAPWKLkrVINGHLGWVRCVAVDPiDNEWFVTGSNDATIKIWDLAKGHLKLT 160
                  56777777777733234455668888887747789999999*********99987655 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00024
  ANAPC4_WD40   5 ptmDLiAlatedgellvfRlng.qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  pt DLiA a  d+ +++  +     v+tl   +++s +++++  p +  ++    d ++rl d+  gk  + l+ ++++ v  +++
   CCD25057.1 217 PTLDLIATAGRDSVVRLWDIRArVSVMTL--IGHKSPINKVHCLPVDPQIVSCSTDATIRLWDIIAGKSRKVLTHHKKS-VRDMSF 299
                  999*********99988766431345555..7999999999999**************************999999885.887776 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.001
  ANAPC4_WD40  19 llvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79 
                  ++  Rl    + t  ++++++ ++sL+ ++ +++L+ + ++g+++++d +sg+  ++l +k
   CCD25057.1 314 IRSWRLPEGALLTNFNSEKSGIINSLSVNQ-DNVLCAGGDNGTLSFYDYKSGHKYQTLATK 373
                  555566544555555778888899999765.68*******************988887665 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00062       1.8     159     239 ..      53     159 ..      51     165 .. 0.74
   2 !    3.2   0.0    0.0098        29     203     234 ..     167     198 ..     162     208 .. 0.83
   3 ?    2.9   0.0     0.013        38     204     245 ..     210     251 ..     204     257 .. 0.85
   4 !    3.2   0.0    0.0099        30     203     240 ..     254     288 ..     241     309 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00062
                    EEEEEC-SSS-CEEEEEEEEE-SSSS-...--SSS--G..............................----GG-EEEEEEECCT.CEEEEEETTS CS
  Nucleoporin_N 159 yeltyrdssgwpslkckkicltkgglssllsilpgvls..............................gasereeivqlridssr.rilytlsskg 223
                    y+l+++  ++ +s+ + k+ ++++ +      l++ ++                              ++     + ++++d++  ++ +t s++ 
     CCD25057.1  53 YRLQISEGNDTTSQDLAKVDSSSTKIN---ATLEKTFGnsmedsilgrhqqyisqrpewhapwklkrvINGHLGWVRCVAVDPIDnEWFVTGSNDA 145
                    677777777777777777777777777...55555555555566666777777777777777777777777777899******************* PP

                    EEEEEEEETTCEE-EE CS
  Nucleoporin_N 224 virvydlsasngessl 239
                    +i+++dl    g+ +l
     CCD25057.1 146 TIKIWDLA--KGHLKL 159
                    ******99..345544 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0098
                    -EEEEEEECCTCEEEEEETTSEEEEEEEETTC CS
  Nucleoporin_N 203 eivqlridssrrilytlsskgvirvydlsasn 234
                    ++  ++i++ +   +++s+++ ++++dl+++ 
     CCD25057.1 167 TVRDIAISERHPYMFSASEDKLVKCWDLEKNT 198
                    577899999999*****************554 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.013
                    EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEH CS
  Nucleoporin_N 204 ivqlridssrrilytlsskgvirvydlsasngesslksdidi 245
                    + ++ i+++  ++ t+ +++v+r +d+ a+ + ++l +++++
     CCD25057.1 210 VHSVDIHPTLDLIATAGRDSVVRLWDIRARVSVMTLIGHKSP 251
                    5678899999******************99888888887765 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.0099
                    -EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEE CS
  Nucleoporin_N 203 eivqlridssrrilytlsskgvirvydlsasngesslk 240
                    ++ +l +d+    +++ s++ +ir +d+ a  + + l+
     CCD25057.1 254 KVHCLPVDP---QIVSCSTDATIRLWDIIAGKSRKVLT 288
                    555666666...5999************9444444433 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.015        43      92     150 ..     135     197 ..     127     207 .. 0.69
   2 ?    6.5   0.0    0.0016       4.7       3      74 ..     210     282 ..     208     301 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.015
   WD40_like  92 ddklliGtnkGsiyvfskdl.qleevllgqsseIkeikienn..kiysLsesafiv.fdlfsq 150
                 ++ ++ G+n  +i +++    +l+ +l g+   +++i i++   +++s se+++++ +dl+ +
  CCD25057.1 135 NEWFVTGSNDATIKIWDLAKgHLKLTLAGHAMTVRDIAISERhpYMFSASEDKLVKcWDLEKN 197
                 44567788888888865432178889999*******999865227899999999862455554 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0016
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillsllenee 74 
                 + s+di +  +li+  g+d  +++ +++   sv  + + +  +  v  l  d +i+ ++ D ti l ++  ++
  CCD25057.1 210 VHSVDIHPTLDLIATAGRDSVVRLWDIRARVSVMTLIGHKSPINKVHCLPVDpQIVSCSTDATIRLWDIIAGK 282
                 89******************************************9999987769999*******988887766 PP

>> DUF4298  Domain of unknown function (DUF4298)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   9.8e-05      0.29      32      70 ..      13      49 ..      10      53 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.8e-05
                HHHHHHHHTSHHHHHHHTS--SS.....--SSTTSSSHH CS
     DUF4298 32 lakLdeYYqseqwredleasnkgelpqelkysvLSEDgi 70
                ++ +++YY+s  wr+++ + ++  lpq lk +v S+D +
  CCD25057.1 13 IQRINDYYSSLRWRNQFSYMER--LPQHLKEKVDSQDPV 49
                67899**************998..7*******9999965 PP

>> SprB  SprB repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.75   2.2e+03      11      19 ..     141     149 ..     140     149 .. 0.85
   2 ?   10.2   0.5   0.00016      0.49       2      18 ..     341     357 ..     340     358 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.75
        SprB  11 ggndGsItv 19 
                 g+nd +I +
  CCD25057.1 141 GSNDATIKI 149
                 99****976 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00016
        SprB   2 atttnvtCnggndGsIt 18 
                 +++ nv C+gg++G+ +
  CCD25057.1 341 VNQDNVLCAGGDNGTLS 357
                 6899**********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:00.35
# Mc/sec: 3704.44
//
Query:       CCD25058.1  [L=359]
Description: hypothetical protein NDAI_0E02410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-114  381.4   0.6   3.7e-114  381.2   0.6    1.0  1  PTPA      Phosphotyrosyl phosphate activator (PTPA) protein
  ------ inclusion threshold ------
       0.21   11.4   0.2        2.2    8.2   0.0    2.3  2  DUF433    Protein of unknown function (DUF433)


Domain annotation for each model (and alignments):
>> PTPA  Phosphotyrosyl phosphate activator (PTPA) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  381.2   0.6  4.1e-118  3.7e-114       1     300 [.       3     298 ..       3     299 .. 0.96

  Alignments for each domain:
  == domain 1  score: 381.2 bits;  conditional E-value: 4.1e-118
                 -B----SCHHHHHHCCCHHHHHHHHHHHHHHHHHT.........T-SS-HHHHHHHHHHHHHCCCTS---SS-..-SSS-THHHHHHHHHHHHHHHHHH CS
        PTPA   1 pakrileeedlekfkkSkayadilefisrlneavkgkklee.eeeasesvekllklLdeleelideippeeqp..sRfGnkafrtwhdrleeraeelle 96 
                 p+kr+l+e+d++ +++S++ +++l+fis+l+eavkg ++++ +e +s+++++l ++L +++++id++p  e +  sRfG+k+fr ++d+++e +e+l++
  CCD25058.1   3 PEKRLLTEDDMKLWEASSTKKELLDFISTLAEAVKGCENSQiSEPISPAINTLEQILVSIDKIIDKHPVLEDKeiSRFGKKEFRGFYDEINEVSEKLIH 101
                 89************************************95548999***********************998779************************ PP

                 HHS-GGGGGG......HHHHHHHHHTTT-BTTTTEE-HHHHHHHHHHHHHHHHTT-STT....--HHHHHHHHHHHHHHHHHHHHHTT-EES------- CS
        PTPA  97 ellpeelkkaelekaaieelkaYlkesfGnatrlDYGtGhElsFlafllcLeklgllkeeeeedeealvlkvfekYlelvrrLqstYtLepAgshGvwG 195
                 e +p+ +++      ++e+l+ Yl es+Gn++r+DYG+GhEl+F++fl+ L+k+++lk +   d +++vl +f kYl+++r+L ++Y+LepAgshGvwG
  CCD25058.1 102 ENFPSLTHE------QLEQLTIYLDESWGNKQRIDYGSGHELNFMCFLFGLYKYDVLKLD--IDARNMVLIIFIKYLDIMRSLETKYWLEPAGSHGVWG 192
                 *99998775......49****************************************665..89*********************************** PP

                 -SSS-SHHHHHHHHCSSS-G....GGGG-HHHHHHHTTT-HHHHHHHHHHHH--S-.HHHH-HHHHHHHCC--HHHHHHHHHHHHHHHTTT-HHHHTT- CS
        PTPA 196 LDDyqflpflfGsaQlvehkklkpksildaevveeyakeylYlsaiafinevKkgp.frehSpmLydisavktWekvnkGlikmYkaevLskfpvvqhf 293
                 LDDy+flpflfG+ Ql++hk+lkp si+++e+ve++ak+ylY+ +iafin+vK+   +r+hSpmL+dis+vk+W+kv +G++kmY+aevLsk+p++qhf
  CCD25058.1 193 LDDYHFLPFLFGAYQLATHKHLKPLSIHNEELVEMFAKKYLYFGCIAFINSVKTTAsLRWHSPMLDDISGVKRWSKVAEGMVKMYNAEVLSKLPIMQHF 291
                 *****************************************************9667****************************************** PP

                 -BBSSSB CS
        PTPA 294 lfGsllp 300
                 +f+++l+
  CCD25058.1 292 YFSEFLK 298
                 ***9986 PP

>> DUF433  Protein of unknown function (DUF433)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1     0.079   7.1e+02      33      49 ..      61      77 ..      55      79 .. 0.89
   2 ?    8.2   0.0   0.00025       2.2      33      55 ..      96     118 ..      93     118 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.079
                -HHHHHHHH.TS-HHHH CS
      DUF433 33 sieeiledyPdLtledi 49
                si+ i++++P L+ ++i
  CCD25058.1 61 SIDKIIDKHPVLEDKEI 77
                89**********99887 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00025
                 -HHHHHHHH.TS-HHHHHHHHT. CS
      DUF433  33 sieeiledyPdLtlediqaalaY 55 
                 s++ i e++P+Lt+e++++   Y
  CCD25058.1  96 SEKLIHENFPSLTHEQLEQLTIY 118
                 677799***********987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2916.49
//
Query:       CCD25059.1  [L=488]
Description: hypothetical protein NDAI_0E02420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-61  208.0   0.0    2.2e-61  206.9   0.0    1.6  1  APG6             Apg6 BARA domain
    3.9e-27   95.4  18.7    3.9e-27   95.4  18.7    2.2  2  APG6_N           Apg6 coiled-coil region
  ------ inclusion threshold ------
      0.011   15.8   1.0        3.5    8.0   0.0    3.7  4  TPR_2            Tetratricopeptide repeat
      0.036   14.7   9.6       0.14   12.8   4.4    2.7  2  YabA             Initiation control protein YabA
      0.056   14.1   1.0        1.2    9.9   0.0    3.1  3  TPR_6            Tetratricopeptide repeat
      0.087   11.5   1.7       0.18   10.4   1.7    1.5  1  Tweety           Tweety
       0.12   10.9   4.9        0.2   10.2   4.9    1.4  1  Herpes_UL6       Herpesvirus UL6 like
       0.18   11.8   2.6        2.8    8.0   0.0    2.7  2  Noelin-1         Neurogenesis glycoprotein
       0.32   11.4   5.2        1.2    9.5   0.0    3.6  3  LPP              Lipoprotein leucine-zipper
       0.37   10.1   9.6       0.73    9.1   9.6    1.4  1  FAM76            FAM76 protein
       0.67   10.1   2.1        4.6    7.5   0.0    3.2  4  TPR_7            Tetratricopeptide repeat
        0.7   10.1  15.6       0.14   12.4  11.8    1.8  2  ATG16            Autophagy protein 16 (ATG16)
          2    6.8   5.1        1.7    7.1   3.7    1.4  1  Corona_S2        Coronavirus S2 glycoprotein
          9    6.7  11.5        1.1    9.6   5.4    2.8  3  E2F_CC-MB        E2F transcription factor CC-MB domain


Domain annotation for each model (and alignments):
>> APG6  Apg6 BARA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.9   0.0   1.7e-64   2.2e-61       1     178 [.     286     483 ..     286     484 .. 0.96

  Alignments for each domain:
  == domain 1  score: 206.9 bits;  conditional E-value: 1.7e-64
        APG6   1 LrktnvyndaFkIshdgkfgtInglrLGrlpsekvewsEinAAlGqtvlLLatiaeklnlkfqeyklvplGstSkiekleeksee..vlelyssgelkl 97 
                 Lrk+n+yn++FkI h+g+fgtInglr+G +++ kv+w+E nA++Gq++lLLati ++ln+k+++y+l+p+Gs+Ski+kl+++s++  ++e+++++++k+
  CCD25059.1 286 LRKINIYNETFKIDHNGPFGTINGLRIGGFEECKVPWRERNAGIGQIILLLATIGNRLNFKLKGYRLRPMGSYSKIMKLSTESQDwiSYEAFHEENFKI 384
                 89*******************************************************************************9999999*********** PP

        APG6  98 g.llfserkfDkamvafleclkqlaekvekedk..................elelPYkikkdkdkigdlsiklqfne.eeeWtkAlkllLtnlkwllaw 176
                 g l+++e++fDka++++l++++q+a+++ ++ +                  ++elPY ++kd  ki+ +s+kl  +e +  Wt+A+k++Ltn+kwlla+
  CCD25059.1 385 GrLFRKETDFDKALECLLDIVQQMADRLPNSPTdttndesslvapssavneTVELPYIMHKD--KINAISVKLYGAEpNLPWTTAMKFFLTNVKWLLAF 481
                 *9999***********************6644456778899*********999******999..*************9********************9 PP

        APG6 177 vs 178
                 +s
  CCD25059.1 482 SS 483
                 88 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       1.8   2.2e+03      69      83 ..      95     109 ..      78     116 .. 0.63
   2 !   95.4  18.7   3.1e-30   3.9e-27       1     133 []     147     283 ..     147     283 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.8
      APG6_N  69 eLkelekereeleae 83 
                 +L + e+er+++e+e
  CCD25059.1  95 QLGKEERERQDVEEE 109
                 333334444444443 PP

  == domain 2  score: 95.4 bits;  conditional E-value: 3.1e-30
      APG6_N   1 PlCeeCtdlLleeldkqleqaekerdaYeeflkklkkekkeeekqdeeleeleee....leklekeeeelleeLkelekereeleaelaaleeeleale 95 
                 P+C++C++++++ l++q+++a ker++Y++fl+kl+ + ++e ++ ++ +++  +    +e+l++++++l+eeL +leke+eel++++++l+ ele++ 
  CCD25059.1 147 PVCQDCCNSMIQDLKNQYDEAIKERETYTAFLNKLEMKVTTEPENSSDKKSASTDslisIEDLKSTRNSLFEELLKLEKEDEELDRQIEDLKDELEQKG 245
                 9***********************************99777654333333333336777**************************************** PP

      APG6_N  96 eeeerfwreynelqlelleleeeldsleaqyehaqnql 133
                  +  +++ e n+ +le+l++ +e +sl++qy+ a++ l
  CCD25059.1 246 MKDLNEMAEVNKTHLEQLQFIQEVQSLQNQYDSALTDL 283
                 ********************************998765 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.56   7.1e+02      14      22 ..     161     169 ..     155     170 .. 0.82
   2 ?   -1.8   0.1       3.7   4.7e+03      23      33 ..     216     226 ..     215     227 .. 0.83
   3 ?    2.7   0.0      0.13   1.7e+02      14      31 ..     273     290 ..     269     293 .. 0.89
   4 ?    8.0   0.0    0.0028       3.5       2      25 ..     379     402 ..     378     408 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.56
       TPR_2  14 lgdyeeAle 22 
                 +++y+eA++
  CCD25059.1 161 KNQYDEAIK 169
                 789****98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.7
       TPR_2  23 afekAleldPn 33 
                 +fe+ l+l+ +
  CCD25059.1 216 LFEELLKLEKE 226
                 69*****9876 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.13
       TPR_2  14 lgdyeeAleafekAleld 31 
                 +++y+ Al ++++  +++
  CCD25059.1 273 QNQYDSALTDLDELRKIN 290
                 89***********99987 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0028
       TPR_2   2 ealynlGlayyklgdyeeAleafe 25 
                 e ++ +G++ +k  d+++Ale++ 
  CCD25059.1 379 EENFKIGRLFRKETDFDKALECLL 402
                 66899*****************86 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.073        93      21      68 ..     154     201 ..     148     210 .. 0.76
   2 ?   12.8   4.4   0.00011      0.14       3      85 ..     213     300 ..     211     308 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.073
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXX CS
        YabA  21 leeleelkeelaelleenaeLeleneklrerleeeekkekekkkelse 68 
                 ++ +++lk++  e ++e ++ ++  +kl  ++++e +++++kk+++ +
  CCD25059.1 154 NSMIQDLKNQYDEAIKERETYTAFLNKLEMKVTTEPENSSDKKSASTD 201
                 56799*******************99**99996555555555544443 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHH.XXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXX CS
        YabA   3 kkelfdkleeleeqleelleeleelkeelae..lleenaeLeleneklrerl.eeeekkekekkkelsegkenLar..lYeeGFHiCn 85 
                 +++lf++l +le++ eel +++e+lk+el++  + + n+  e+++++l +++  +e ++ +++  +  +  ++L++  +Y+e F i +
  CCD25059.1 213 RNSLFEELLKLEKEDEELDRQIEDLKDELEQkgMKDLNEMAEVNKTHLEQLQfIQEVQSLQNQYDSALTDLDELRKinIYNETFKIDH 300
                 5789************************986325566888889999999988533444444555555566777765227***999865 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       1.8   2.3e+03      12      28 ..     160     179 ..     155     180 .. 0.67
   2 ?   -0.1   0.1       1.5   1.9e+03      12      28 ..     272     288 ..     267     289 .. 0.83
   3 ?    9.9   0.0   0.00095       1.2       4      28 ..     382     406 ..     382     407 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.8
                 HHHHHHHHHH...HHHHHHH CS
       TPR_6  12 klgdtdkAle...alerlik 28 
                   +++d+A++   ++  +++
  CCD25059.1 160 LKNQYDEAIKereTYTAFLN 179
                 44699999986667777765 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHH CS
       TPR_6  12 klgdtdkAlealerlik 28 
                  ++++d Al+ l++l+k
  CCD25059.1 272 LQNQYDSALTDLDELRK 288
                 478*******9999976 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00095
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerlik 28 
                 +k+++++rk +d dkAle l ++++
  CCD25059.1 382 FKIGRLFRKETDFDKALECLLDIVQ 406
                 89*******99*******9877665 PP

>> Tweety  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.7   0.00014      0.18     103     168 ..     225     290 ..     206     301 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
      Tweety 103 htlagikklvseteesleekleeeLtkleeifakrtdlletlrlvqeqveevvqqlselpflkkkd 168
                 +    +++++++++++le+k +++L+++ e+ +++ + l+ ++ vq+  ++  ++l++l  l+k +
  CCD25059.1 225 KEDEELDRQIEDLKDELEQKGMKDLNEMAEVNKTHLEQLQFIQEVQSLQNQYDSALTDLDELRKIN 290
                 55567899***********************99999955555555555555555555555444433 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.9   0.00015       0.2     367     436 ..     206     276 ..     127     296 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00015
  Herpes_UL6 367 ikcleeqineqfdtiekLkkenelllkklkelekeLerlreeakk.eakarevdlltsstdaslenlpess 436
                 i+ l++  n++f+++ kL+ke e l +++++l++eLe+   ++ +  a+ +++ l + + ++++++l+++ 
  CCD25059.1 206 IEDLKSTRNSLFEELLKLEKEDEELDRQIEDLKDELEQKGMKDLNeMAEVNKTHLEQLQFIQEVQSLQNQY 276
                 34588889******************************988888767788888888888888888886543 PP

>> Noelin-1  Neurogenesis glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0    0.0022       2.8      42      94 ..     122     175 ..     117     180 .. 0.89
   2 ?    1.5   1.8      0.22   2.9e+02      53      91 ..     250     288 ..     225     296 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0022
    Noelin-1  42 rqllekvqnlsqsievldlRtsrdlqyvrkt.etllktlesklkvveedrkels 94 
                 + l+ +++ ls+  ++l+ +t+ d    ++  ++++++l+++++++ ++r++++
  CCD25059.1 122 KTLSSQINALSNIFNILSSKTKIDYPVCQDCcNSMIQDLKNQYDEAIKERETYT 175
                 78999*********************99986267899********999988876 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.22
    Noelin-1  53 qsievldlRtsrdlqyvrktetllktlesklkvveedrk 91 
                 +++  +++   ++lq+++++++l ++ +s l++++e rk
  CCD25059.1 250 NEMAEVNKTHLEQLQFIQEVQSLQNQYDSALTDLDELRK 288
                 4566667777789************99999999988766 PP

>> LPP  Lipoprotein leucine-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00097       1.2       4      37 ..     123     167 ..     121     169 .. 0.94
   2 ?    1.0   0.1      0.46   5.9e+02       4      18 ..     229     243 ..     220     258 .. 0.65
   3 ?   -0.1   0.3      0.96   1.2e+03       7      24 ..     267     284 ..     259     288 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00097
         LPP   4 eLssqVsqLkskvdqlssd...........vnsakaaaqaakeEA 37 
                  Lssq+++L++ ++ lss+            ns+ +++++ ++EA
  CCD25059.1 123 TLSSQINALSNIFNILSSKtkidypvcqdcCNSMIQDLKNQYDEA 167
                 69*************************999999******999999 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.46
         LPP   4 eLssqVsqLkskvdq 18 
                 eL  q+++Lk++ +q
  CCD25059.1 229 ELDRQIEDLKDELEQ 243
                 455555556555544 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.96
         LPP   7 sqVsqLkskvdqlssdvn 24 
                 ++V++L+++ d+   d++
  CCD25059.1 267 QEVQSLQNQYDSALTDLD 284
                 578888888777655555 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   9.6   0.00057      0.73     195     291 ..     164     275 ..      84     283 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00057
       FAM76 195 k.................laeekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaellekekelreklkelekeake 276
                                    + + +++ ++++  +s+s+d l+ +++Lk + +sl  +l + ++e  e d++i +lk el++k  +  + + e++k++ e
  CCD25059.1 164 YdeaikeretytaflnklEM-KVTTEPENSSDKKSASTDSLISIEDLKSTRNSLFEELLKLEKEDEELDRQIEDLKDELEQKGMKDLNEMAEVNKTHLE 261
                 02222223334454442222.2222223334678899***********************99999*************999999999999999998877 PP

       FAM76 277 kieklekkirellke 291
                 +++ + +++++l+ +
  CCD25059.1 262 QLQFI-QEVQSLQNQ 275
                 76555.466777665 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.5   1.9e+03      12      22 ..     161     171 ..     157     185 .. 0.82
   2 ?   -2.2   0.2       4.4   5.6e+03      20      33 ..     215     228 ..     215     230 .. 0.81
   3 ?   -1.6   0.0         3   3.8e+03       5      20 ..     266     281 ..     263     285 .. 0.79
   4 ?    7.5   0.0    0.0036       4.6       5      22 ..     384     401 ..     382     415 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1.5
       TPR_7  12 lGdyeeAiely 22 
                  ++y+eAi+  
  CCD25059.1 161 KNQYDEAIKER 171
                 589****9855 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.4
       TPR_7  20 elyeqsLaltkdpe 33 
                 +l+e++L l+k++e
  CCD25059.1 215 SLFEELLKLEKEDE 228
                 58999999999887 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 3
       TPR_7   5 LarlysrlGdyeeAie 20 
                 + +++s +++y+ A++
  CCD25059.1 266 IQEVQSLQNQYDSALT 281
                 566788899***9986 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0036
       TPR_7   5 LarlysrlGdyeeAiely 22 
                 ++rl++++ d+++A+e++
  CCD25059.1 384 IGRLFRKETDFDKALECL 401
                 79**************97 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1         6   7.7e+03     166     180 ..      95     109 ..      64     128 .. 0.64
   2 ?   12.4  11.8   0.00011      0.14      19     145 ..     159     275 ..     150     290 .. 0.64

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6
       ATG16 166 qlnqaEeklrklekE 180
                 ql + E +++++e+E
  CCD25059.1  95 QLGKEERERQDVEEE 109
                 233333333333333 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00011
       ATG16  19 eliqaynrLldrtsaleaenaklekaaasakssksskksakekeasasqsnskqsakiqsleqklaqlreelaelyksrgelaqrllelneelqkleek 117
                 +l ++y + ++  ++  a   kle + +++++     +s+ +k+      ++++  +i++l++++ +l eel +l k+ +el  ++ +l++el+++  k
  CCD25059.1 159 DLKNQYDEAIKERETYTAFLNKLEMKVTTEPE-----NSSDKKS-----ASTDSLISIEDLKSTRNSLFEELLKLEKEDEELDRQIEDLKDELEQKGMK 247
                 44444555555555555555555333332222.....1111111.....23456788888888888888888888888888888888888888888887 PP

       ATG16 118 lkedeerlaeleaeraaletklkdreee 145
                   ++ +++++ + e  +  +++++++++
  CCD25059.1 248 DLNEMAEVNKTHLEQLQFIQEVQSLQNQ 275
                 7777777777777777777777666655 PP

>> Corona_S2  Coronavirus S2 glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.7    0.0013       1.7     475     542 ..     223     292 ..     196     295 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0013
                 SGGGCCXXXXXXXXXXXXSX..XXXXHHHHTTHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHTTHHHH CS
   Corona_S2 475 lvpeyidvneelqkllenyk..pnvelpdldkfnatvlnltseidrlqevidnlneslvdleklnrlety 542
                 l  e+ +++ ++++l ++ +     +l ++ ++n+t l+  + i+++q++ ++ +++l dl++l +++ y
  CCD25059.1 223 LEKEDEELDRQIEDLKDELEqkGMKDLNEMAEVNKTHLEQLQFIQEVQSLQNQYDSALTDLDELRKINIY 292
                 455666666666666544332256799999*************************************988 PP

>> E2F_CC-MB  E2F transcription factor CC-MB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       2.7   3.5e+03      23      29 ..     161     167 ..     123     212 .. 0.62
   2 ?    9.6   5.4   0.00087       1.1       3      50 ..     218     265 ..     216     296 .. 0.74
   3 ?   -3.1   0.0       8.3   1.1e+04      18      29 ..     401     412 ..     387     448 .. 0.51

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.7
   E2F_CC-MB  23 teqlknl 29 
                 ++q  + 
  CCD25059.1 161 KNQYDEA 167
                 2222222 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00087
   E2F_CC-MB   3 qelesleeeeqkLDelieklteqlknl.tedeknqlaYvtyedirsias 50 
                 +el +le+e+++LD++ie l+++l++   +d ++ +a v++  + +++ 
  CCD25059.1 218 EELLKLEKEDEELDRQIEDLKDELEQKgMKDLNE-MAEVNKTHLEQLQF 265
                 7999********************9874444444.44455555555443 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 8.3
   E2F_CC-MB  18 lieklteqlknl 29 
                 l++++++   +l
  CCD25059.1 401 LLDIVQQMADRL 412
                 333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1973  (0.110045); expected 358.6 (0.02)
Passed bias filter:                      693  (0.0386525); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 3372.96
//
Query:       CCD25060.1  [L=661]
Description: hypothetical protein NDAI_0E02430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-49  168.0   0.0    4.3e-49  166.6   0.0    1.7  2  DEAD            DEAD/DEAH box helicase
    5.6e-33  113.6   0.0    1.8e-32  112.0   0.0    1.9  2  Helicase_C      Helicase conserved C-terminal domain
    0.00067   19.7   0.0     0.0016   18.5   0.0    1.6  2  ResIII          Type III restriction enzyme, res subunit
     0.0099   15.1   0.0      0.014   14.6   0.0    1.2  1  ERCC3_RAD25_C   ERCC3/RAD25/XPB C-terminal helicase
  ------ inclusion threshold ------
      0.025   13.9   0.0      0.059   12.7   0.0    1.5  1  CMS1            U3-containing 90S pre-ribosomal complex subun
      0.065   12.4   0.1      0.093   11.9   0.1    1.1  1  DUF844          Baculovirus protein of unknown function (DUF8


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6   0.0   1.4e-52   4.3e-49       1     175 [.     209     393 ..     209     394 .. 0.94
   2 ?   -2.1   0.0      0.91   2.7e+03      58     104 ..     453     499 ..     431     505 .. 0.59

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 1.4e-52
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.............TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet.............kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggva 86 
                 t++Q+ +ip+i +g+d++++a+TGsGKT+ fl+pvl++ +++              +k  p  li++PtreLa q+++++kkf+    ++ ++++gg +
  CCD25060.1 209 TPVQKYSIPIIANGRDLMACAQTGSGKTGGFLFPVLSEAFKSgpsptpeqgrnfySKKGYPTSLILAPTRELATQIFEEAKKFTYRSWVKPCVVYGGAP 307
                 79**********************************9999999**999999999989999*************************9889********** PP

                 HHHHHHHHHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST.TTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
        DEAD  87 ardqlskldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgk.lqrqvivlSATlpkdvkk 175
                   +q++++d+g+d++v+tpgrl dll++gk++l+++++lVlDEadr+ld+gf+++i++i++ ++ +    +  +rq++++SAT+p d+++
  CCD25060.1 308 IGNQMREIDHGCDLLVATPGRLSDLLERGKISLQNIKYLVLDEADRMLDMGFEPQIRHIVEGVD-MP---QvGERQTLMFSATFPIDIQQ 393
                 ***************************************************************3.22...235578*********88876 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.91
                 HHHHHHHHHHHHHTTTSTSEEEEEET...TSSHHHHHHHHHTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx.xxxxxxx RF
        DEAD  58 eLaeqtlnnlkkfkkyidlrvlliig...gvaardqlskldng.vdivvgt 104
                      ++++l+ f+   + r+ +i g   + ++++ ls++++g ++++v+t
  CCD25060.1 453 R----MADQLTDFLIMQNFRATAIHGdrtQAERERALSAFKAGtANLLVAT 499
                 3....3344444444444666666663324444455555555567777777 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.3   6.7e+03      19      51 ..     271     307 ..     263     350 .. 0.61
   2 !  112.0   0.0   5.9e-36   1.8e-32       1     111 []     428     537 ..     428     537 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.3
                 EEEEESSHHHHHHHHHHHHHT......TSTEEEESTTST CS
  Helicase_C  19 ilifvntidrlekvklllekk......gikvavlhgelp 51 
                 +li ++t++ +   ++++e k       +k +v++g  p
  CCD25060.1 271 SLILAPTRELAT--QIFEEAKkftyrsWVKPCVVYGGAP 307
                 577777777553..4443333122222455555555444 PP

  == domain 2  score: 112.0 bits;  conditional E-value: 5.9e-36
                 HHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHH CS
  Helicase_C   1 dkleallellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvts 99 
                 dk++all+ll +  ++g +lifv+t++++++++ +l  ++++++++hg+ +q ere++l++f++g+ ++L+at va+rG+dip+v++Vinfdlp ++++
  CCD25060.1 428 DKYSALLDLL-SATSDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQAERERALSAFKAGTANLLVATAVAARGLDIPNVTHVINFDLPSDIDD 525
                 68999****9.999***************99555556778*********************************************************** PP

                 HHHHHTTSSSTT CS
  Helicase_C 100 yiqriGRtgRag 111
                 y++riGRtgRag
  CCD25060.1 526 YVHRIGRTGRAG 537
                 **********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.3e-07    0.0016      25     170 ..     223     388 ..     195     389 .. 0.81
   2 ?   -3.6   0.0       3.2   9.5e+03      57      74 ..     445     467 ..     435     499 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 5.3e-07
                 SEEEEEESTTSTHHHHH.HHHHHHH-S....................-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--........-SE CS
      ResIII  25 krglikmaTGtGKTlva.aklierllkkgkee...............kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekdstnkki 106
                 + ++  + TG+GKT    + +  + +k+g+                   l+l+p+++l  q  ee kkf+     + + ++ g    +  ++ ++ +++
  CCD25060.1 223 RDLMACAQTGSGKTGGFlFPVLSEAFKSGPSPtpeqgrnfyskkgypTSLILAPTRELATQIFEEAKKFTYRSWVKPCVVYGGAPIGNqMREIDHGCDL 321
                 55667789******988799999999999988999***********************************99877744443333322223445899*** PP

                 EEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.....SEEEEEESS-S CS
      ResIII 107 lvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.....avllglTATpe 170
                 lv+t  +l+  +     e+ + + +++++++ DEa r+ ++    ++r+i+e ++         l ++AT++
  CCD25060.1 322 LVATPGRLSDLL-----ERGKISLQNIKYLVLDEADRMLDMgfePQIRHIVEGVDMpqvgeRQTLMFSATFP 388
                 ************.....899999999**************97655999985555333334499999999986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.2
                 EEEEESSHHHHHHHH.....HHG CS
      ResIII  57 flflvprkslleqtl.....eef 74 
                 +l++v +k + +q+      ++f
  CCD25060.1 445 TLIFVETKRMADQLTdflimQNF 467
                 56677777777776533333333 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.8e-06     0.014      77     151 ..     464     536 ..     412     549 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.8e-06
  ERCC3_RAD25_C  77 akklkkpyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLra 151
                     ++++ + i+G+ ++aer + l++fk+  + n ++   v+   +D+P+ + +i  +           r+Gr  ra
     CCD25060.1 464 MQNFRATAIHGDRTQAERERALSAFKAG-TANLLVATAVAARGLDIPNVTHVINFDLPSD-IDDYVHRIGRTGRA 536
                    46678899******************97.67999999*************9997654322.23345566666555 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     2e-05     0.059     182     209 ..     323     350 ..     318     355 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
        CMS1 182 vGtpgRildLleeeslsvdeLkrivlDa 209
                 v tpgR+ dLle + +s++++k++vlD 
  CCD25060.1 323 VATPGRLSDLLERGKISLQNIKYLVLDE 350
                 78************************96 PP

>> DUF844  Baculovirus protein of unknown function (DUF844)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   3.1e-05     0.093     120     201 ..     392     469 ..     380     502 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.1e-05
      DUF844 120 rsaaeklinyyvlasvssteykvkdvvklylyllriekykslyklleetlddrtcvPiistvktdllldalrdllvitstrl 201
                 +++a+  +n yv  sv     +  ++ + +ly+   +ky +l  ll  t d  t       v+t+ + d+l d+l + ++r 
  CCD25060.1 392 QQLARDFLNDYVFLSVGRVGSTSDNITQKILYVEDQDKYSALLDLLSATSDGLTLI----FVETKRMADQLTDFLIMQNFRA 469
                 468999*******************************************9998754....4566677889999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4832.65
//
Query:       CCD25061.1  [L=374]
Description: hypothetical protein NDAI_0E02440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-68  229.6   3.0      2e-67  228.4   3.0    1.6  1  Mit_ribos_Mrp51  Mitochondrial ribosomal protein subunit
  ------ inclusion threshold ------
       0.11   12.1   0.2        3.2    7.4   0.1    2.4  2  DUF188           Uncharacterized BCR, YaiI/YqxD family COG167
       0.14   12.3   0.0       0.48   10.5   0.0    1.9  2  Cas_Cas2CT1978   CRISPR-associated protein (Cas_Cas2CT1978)


Domain annotation for each model (and alignments):
>> Mit_ribos_Mrp51  Mitochondrial ribosomal protein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.4   3.0   3.3e-71     2e-67       2     364 ..       9     316 ..       8     317 .. 0.82

  Alignments for each domain:
  == domain 1  score: 228.4 bits;  conditional E-value: 3.3e-71
  Mit_ribos_Mrp51   2 splaaLLRnSRLfslpkplpppalsasdtatlpyPthqaItTpksslargdWGLKrslPlksttskvsspvirvnalDtiehitdfesaadhtl 95 
                      s++++L+R+++L ++p++ +p  l+ ++++++ yPthq+I+T++ssl+r+dWGLK+s+P     sk++s+++ +n++Dt+e++t+fe+++d+++
       CCD25061.1   9 SRISNLIRTTKLSHVPQNSRP--LNPTTSHKY-YPTHQIIETKPSSLYRQDWGLKASIP-----SKIKSRYLIFNEMDTLERLTSFEPRGDTQW 94 
                      789******************..999888888.**************************.....9***************************** PP

  Mit_ribos_Mrp51  96 tlkkfqElgiplkssekeakakkSvFeeeadvt.sekakekedkrwkfkgPllagmte.........gelseylkkk........vrkrrkeFk 171
                       +++f+E+gi +   + ++ + +  F+++++   +             ++Pl  +m +         +e ++ lk +        ++k r+eFk
       CCD25061.1  95 IRRRFNEMGINI---NFNTGKINPLFDTNNSAAmE----------ADISNPLS-SMLNidakskaagHETTKKLKLNdvvvafqyLKKYRNEFK 174
                      ************...66666777888888755522..........23344443.2222222232333233333333355666688********* PP

  Mit_ribos_Mrp51 172 kfLreklaeektaearraalekgeealkek.iseeelkeylkklradrqklyklvseFLdlaplkskeaaeekasaelskakreqgppkthpsa 264
                      k+L e+ +                e++  k +s++++k+ +   +            FL+++ +++k+          s+++ ++ p k+++s+
       CCD25061.1 175 KWLLERNP----------------EVFLGKkFSPKDMKNDAL--E------------FLQEKLASNKS----------SSSQLNNIPRKIVGSG 228
                      ********................7777777*********99..8............*****988777..........2333468899****** PP

  Mit_ribos_Mrp51 265 GLsYlrtgaylenhPlygpqkqktpvpaRvlsprtsatgeskaklgvGGfvandpssstsaskvsagleaidpdlergakipvevkeasvdsdG 358
                      GL+Y+++g+ l+n+P  +++ +k++  +R+l+    + ++++ +l+vGGf+++++s++   +k + +    ++  +r+ ++pv+vk+a++ds+G
       CCD25061.1 229 GLTYSLRGR-LKNSP--NGIVEKNIFAGRCLN----SLSNERYTLAVGGFITTVNSQRI-ENKLRVS----NNVSIRECVVPVDVKDATLDSEG 310
                      *********.*****..***************....333589999********999874.4355533....46789****************** PP

  Mit_ribos_Mrp51 359 rirlev 364
                      ri +++
       CCD25061.1 311 RIFIRA 316
                      ***987 PP

>> DUF188  Uncharacterized BCR, YaiI/YqxD family COG1671
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.024   1.4e+02      26      57 ..     131     162 ..     111     165 .. 0.83
   2 ?    7.4   0.1   0.00054       3.2      93     129 ..     334     370 ..     299     371 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.024
      DUF188  26 splvetvvVdsgadaaDdaIveraeagDlvvT 57 
                 +pl++++ +d++  aa ++  ++++ +D+vv 
  CCD25061.1 131 NPLSSMLNIDAKSKAAGHETTKKLKLNDVVVA 162
                 49999*************************95 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00054
      DUF188  93 RdlmkklRragertggpkkfskedrsrFakaLdrlla 129
                    mk++R    r+ ++++++++d +r+a++L ++++
  CCD25061.1 334 SFSMKSIRLGSRRNPKQAPRNTSDSTRYANELLKIIK 370
                 3358899999999********************9985 PP

>> Cas_Cas2CT1978  CRISPR-associated protein (Cas_Cas2CT1978)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   8.1e-05      0.48       3      34 ..     159     191 ..     158     212 .. 0.85
   2 ?   -3.0   0.0       1.3   8.1e+03      12      19 ..     233     240 ..     230     257 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.1e-05
                     EEEEES--HHHHHHHHHHSEEEETTEEEE.EE- CS
  Cas_Cas2CT1978   3 VivleavparlRGeLtrwllEvragVyvg.rvs 34 
                     V+v+ +  +++R e ++wllE ++ V+ g ++s
      CCD25061.1 159 VVVAFQYLKKYRNEFKKWLLERNPEVFLGkKFS 191
                     7888888899******************95554 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
                     HHHHHHHH CS
  Cas_Cas2CT1978  12 rlRGeLtr 19 
                     +lRG+L+ 
      CCD25061.1 233 SLRGRLKN 240
                     79999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 2537.50
//
Query:       CCD25062.1  [L=276]
Description: hypothetical protein NDAI_0E02450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-25   89.0   0.0    4.2e-25   88.3   0.0    1.3  1  NUDIX     NUDIX domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   2.3e-29   4.2e-25       2     131 .]      88     245 ..      87     245 .. 0.91

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 2.3e-29
                 EEEEEEEEEEETTSEEEEEEES..SSSTTT.E....E.SS.........EEECBTTS.HHHHHHHHHHHHHHSEEEEEE......EEEEEEEEEEEEEE CS
       NUDIX   2 lrravgvvllnekgevLlvrrs..kkpfpg.W....e.lP.........gGkvepgE.tpeeAArREleEEtGleaell......ellgrlhylapydg 76 
                 l+ra++v+l+n+++++Ll++r+  k +fp  W    + +P           ++++    +  AA R+l++E+G++ e++      ++l+r+hy+ap+++
  CCD25062.1  88 LHRAFSVFLFNSENKLLLQQRAseKITFPClWtntcCsHPlciddeigsNHHLDKKIqGAIVAATRKLNHELGIPTEEIermgkfHFLNRIHYMAPSNE 186
                 79*****************************98886368899*999999999998877888************988999999999************** PP

                 EEEEEEEEEEEEE.....EEECSGCSST.STTTEEEEEEEEHHHHHHHHTHCTHHHHHHHH CS
       NUDIX  77 pygdeheilyvfl.....eevegelepn.denevsevrwvpleellkeklaaesrkllpwl 131
                 p+g ehei+y+++        +++l++n + nev++++wv+++el k +l++++ k++pw+
  CCD25062.1 187 PWG-EHEIDYILFyklnyTGTKEDLTVNpNVNEVRDYKWVSMDEL-KSMLEDPNLKFTPWF 245
                 ***.9****999999888666666666689***************.**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.21s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 2218.00
//
Query:       CCD25063.1  [L=486]
Description: hypothetical protein NDAI_0E02460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.037   14.2   6.7        0.1   12.8   0.1    4.0  4  DASH_Dad1     DASH complex subunit Dad1
      0.044   14.2   0.5      0.044   14.2   0.5    3.8  4  HMA           Heavy-metal-associated domain
        1.6    9.0  19.1        1.7    8.9   1.1    3.7  3  MutS_II       MutS domain II
        2.3    8.8   0.0        2.3    8.8   0.0    4.3  4  PAS_10        PAS domain
        3.8    7.5  17.2        1.1    9.4   0.6    4.5  5  Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C
        4.1    7.5   8.1         29    4.8   0.2    4.0  4  Bromodomain   Bromodomain


Domain annotation for each model (and alignments):
>> DASH_Dad1  DASH complex subunit Dad1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   3.4e-05       0.1       5      34 ..      28      57 ..      26      62 .. 0.92
   2 ?    2.0   0.1     0.079   2.4e+02      26      44 ..     150     168 ..     131     171 .. 0.84
   3 ?   -0.6   0.1      0.52   1.5e+03      11      33 ..     195     217 ..     182     220 .. 0.79
   4 ?   -3.0   0.1       2.9   8.7e+03      33      45 ..     447     459 ..     444     460 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.4e-05
   DASH_Dad1  5 qRdrliqeIaesmeevlnnlnaLNRsLEev 34
                +Rdrl++eI ++++e  + l +LN+++ ++
  CCD25063.1 28 ERDRLVEEIQSKVQEYDSELTTLNKRIKST 57
                8************************99775 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.079
   DASH_Dad1  26 aLNRsLEeviavgkeFesV 44 
                  L ++L ++++v ++F+sV
  CCD25063.1 150 VLEKQLKSLNKVYNDFKSV 168
                 6999*************99 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.52
   DASH_Dad1  11 qeIaesmeevlnnlnaLNRsLEe 33 
                 +e+++++e++ n+l  L  + E+
  CCD25063.1 195 REVTAKVEQLQNKLKELQNQVEK 217
                 68888888888888888777776 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 2.9
   DASH_Dad1  33 eviavgkeFesVa 45 
                 ++++v ke e V+
  CCD25063.1 447 NILTVEKELERVE 459
                 5678888888887 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       4.5   1.3e+04      15      27 ..     150     162 ..     147     163 .. 0.75
   2 ?   -1.2   0.1      0.94   2.8e+03      41      58 ..     198     217 ..     179     220 .. 0.66
   3 ?   -3.4   0.0       4.9   1.5e+04      38      46 ..     353     361 ..     350     377 .. 0.56
   4 ?   14.2   0.5   1.5e-05     0.044      27      59 ..     456     485 ..     445     486 .] 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.5
         HMA  15 kvekvLselpgVe 27 
                   ek L++l+ V+
  CCD25063.1 150 VLEKQLKSLNKVY 162
                 5688999998887 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.94
         HMA  41 egdaes..tklrkiieaiek 58 
                 + ++e+   kl+++++++ek
  CCD25063.1 198 TAKVEQlqNKLKELQNQVEK 217
                 44344322344667777776 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.9
         HMA  38 vtVegdaes 46 
                 v Ve+d+++
  CCD25063.1 353 VLVEYDDDE 361
                 668887776 PP

  == domain 4  score: 14.2 bits;  conditional E-value: 1.5e-05
         HMA  27 esvkvdlatktvtVegdaestklrkiieaieka 59 
                 e v+ d+a+k++t++g++e+   +k+++++eka
  CCD25063.1 456 ERVEQDFAKKEATIKGEMEK---KKLQRQMEKA 485
                 56788***************...********97 PP

>> MutS_II  MutS domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.1   0.00058       1.7      59     110 ..      38      88 ..      25     116 .. 0.85
   2 ?    4.5   2.2     0.013        40      35      98 ..     182     252 ..     171     288 .. 0.81
   3 ?    5.4   1.7    0.0068        20      45     111 ..     408     476 ..     388     483 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00058
                 CCHHHHHHCHCTTT-EEEEESCCCCSHCCHHHHCHHHB--STTTTTTTGGG- CS
     MutS_II  59 staeeessklrelrsrvgvretvefesekaserleedfsvedldgfglekek 110
                 s+++e++s+l +l +r++ +++ ++++ k++++++e +++ +  ++ l k++
  CCD25063.1  38 SKVQEYDSELTTLNKRIKSTKANYKKLIKERNEVQEEYKKYLKTQLDL-KGS 88 
                 23389*********************************9988777766.444 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.013
                 -HHHHHHHHHH-ESEEEEESS-SCCCH.......HHHHHCHCTTT-EEEEESCCCCSHCCHHHHCHHHB-- CS
     MutS_II  35 feeleaeLsrlsPkElllpedlsesta.......eeessklrelrsrvgvretvefesekaserleedfsv 98 
                 ++ l+ e s+l+P+E+ ++   ++++        e+++sk++ ++      ++v ++   + ++ ++++++
  CCD25063.1 182 VTALKEEFSSLNPREVTAKVEQLQNKLkelqnqvEKTYSKEEAVILQRDKLHQVREDKYAEIQKTKRHYNK 252
                 7899999********98776665554467777999999999999999999999999999999999998865 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0068
                 H-ESEEEEESS-SCCCHHHHHHCHCTTT-EEEEESC.....CCCSHCCHHHHCHHHB--STTTTTTTGGG-H CS
     MutS_II  45 lsPkElllpedlsestaeeessklrelrsrvgvret.....vefesekaserleedfsvedldgfglekekk 111
                 l+  E+++p + +e   e+++s+lre+r+    r++      +  +ek+ er+e+df++++   +g  +ekk
  CCD25063.1 408 LAEFEIVIPISQEEL--EKTISQLREKRKDYIERQKevtekNILTVEKELERVEQDFAKKEATIKGE-MEKK 476
                 666699999998777..56888888888766555332322255667889********9988877776.4444 PP

>> PAS_10  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       2.1   6.2e+03      81      81 ..      71      71 ..      30     116 .. 0.58
   2 ?    0.7   1.0      0.26   7.6e+02      48      83 ..     194     228 ..     181     269 .. 0.51
   3 ?    8.8   0.0   0.00079       2.3      59     101 ..     278     320 ..     263     326 .. 0.87
   4 ?    2.8   0.2     0.061   1.8e+02      51      82 ..     418     449 ..     411     472 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.1
      PAS_10 81 v 81
                v
  CCD25063.1 71 V 71
                1 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.26
      PAS_10  48 pkkavknveeviealrtgekdevevvvpkngkwvlv 83 
                 p++   +ve++ ++l++ ++++++++  k++ ++l+
  CCD25063.1 194 PREVTAKVEQLQNKLKELQNQVEKTYS-KEEAVILQ 228
                 444444444444444444444433332.22222222 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00079
      PAS_10  59 iealrtgekdevevvvpkngkwvlvrylpyrdedgeiaGvvet 101
                  ++lr+  + ++++v + ++++++ ++ ++rde + i+G+++ 
  CCD25063.1 278 RKRLRNLAEAKESIVTKIQERLIQAKIPAFRDEVKAIEGCLVA 320
                 57899999999999999**********************9876 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.061
      PAS_10  51 avknveeviealrtgekdevevvvpkngkwvl 82 
                 +++++e+ i +lr+++kd+ e + ++ +k +l
  CCD25063.1 418 SQEELEKTISQLREKRKDYIERQKEVTEKNIL 449
                 678899999********999988887766665 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.051   1.5e+02      40      68 ..      33      60 ..      26      81 .. 0.46
   2 ?    9.4   0.6   0.00035       1.1      15     102 ..      82     170 ..      79     177 .. 0.87
   3 ?    7.6   0.8    0.0012       3.5      43     101 ..     154     215 ..     148     226 .. 0.76
   4 ?   -1.1   0.0       0.6   1.8e+03      60      65 ..     294     299 ..     266     334 .. 0.53
   5 ?   -1.0   0.1      0.56   1.7e+03      36      56 ..     437     457 ..     392     479 .. 0.56

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.051
  Baculo_PEP_C 40 ldaietqLnalsedlksllaeldtrldtl 68
                  +++i++++++ +++l+ l + +++  +++
    CCD25063.1 33 VEEIQSKVQEYDSELTTLNKRIKS-TKAN 60
                  344444444444444443333322.2223 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00035
  Baculo_PEP_C  15 fldLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq..dtlrneLtnlnsiltnLlssvt 102
                   +ldL    + i+ q   + +++++  ++i+t+L++ ++++ s  a ++ r+++  + +++   +l   + l+++L++ln++ ++  s v+
    CCD25063.1  82 QLDLKGSRQKIQDQIKIVDTNIKKKNTEINTKLGKNKSRFGS-AAGVSIRIKEIEDSISSGKLTLVeeKVLEKQLKSLNKVYNDFKSVVP 170
                   4899999999*****************************999.7889***********987666666778999*******9999998775 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0012
  Baculo_PEP_C  43 ietqLnalsedlksllaeldt..rldtlltnLtdalnalq.dtlrneLtnlnsiltnLlssv 101
                     ++Ln++ +d+ks+++ +++    ++ +t+L++   +l+  +++ + + l+++l +L+++v
    CCD25063.1 154 QLKSLNKVYNDFKSVVPIVKSigSDEKKVTALKEEFSSLNpREVTAKVEQLQNKLKELQNQV 215
                   45678888888888888777776667788888888888888888888888888888888877 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.6
  Baculo_PEP_C  60 eldtrl 65 
                   ++++rl
    CCD25063.1 294 KIQERL 299
                   222221 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.56
  Baculo_PEP_C  36 latlldaietqLnalsedlks 56 
                   ++++++  e+++ +++++l++
    CCD25063.1 437 IERQKEVTEKNILTVEKELER 457
                   233333333333333333333 PP

>> Bromodomain  Bromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.2    0.0099        29      22      48 ..      68      94 ..      43      97 .. 0.83
   2 ?    4.5   0.0     0.012        36      39      64 ..     143     168 ..     136     171 .. 0.93
   3 ?   -0.1   0.2      0.32   9.6e+02      46      70 ..     235     259 ..     200     269 .. 0.83
   4 ?   -3.0   0.0       2.7     8e+03       8      22 ..     332     350 ..     325     366 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0099
                 -GCCSTTHHHH.SS---HHHHHHHHHT CS
  Bromodomain 22 dpeefpdyyavikkPldLstIkkkles 48
                  +e+ ++y+++ k +ldL+  ++k+++
   CCD25063.1 68 RNEVQEEYKKYLKTQLDLKGSRQKIQD 94
                 78999******************9986 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.012
                  HHHHHHHHHTT--SSHHHHHHHHHHH CS
  Bromodomain  39 LstIkkklesnkYksladfeadlkll 64 
                  L+ +++k+ +++ ksl ++++d+k +
   CCD25063.1 143 LTLVEEKVLEKQLKSLNKVYNDFKSV 168
                  8999*******************987 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.32
                  HHTT--SSHHHHHHHHHHHHHHHHH CS
  Bromodomain  46 lesnkYksladfeadlkllfsNark 70 
                  +++ kY  +++ + + + +f+N +k
   CCD25063.1 235 VREDKYAEIQKTKRHYNKMFKNFKK 259
                  4788999999999999999999776 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 2.7
                  BHTTT.CGGGGCSTT...- CS
  Bromodomain   8 llehk.laepFlepv...d 22 
                  l++++  +e+ ++pv   d
   CCD25063.1 332 LFDNDmMNETVSKPVekdD 350
                  5555556666666663322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3648  (0.203469); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.17u 0.37s 00:00:01.54 Elapsed: 00:00:00.57
# Mc/sec: 2565.31
//
Query:       CCD25064.1  [L=370]
Description: hypothetical protein NDAI_0E02470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-59  201.3   0.0    3.7e-59  200.7   0.0    1.2  1  Peptidase_C14  Caspase domain
  ------ inclusion threshold ------
        0.1   12.9   0.0        1.7    9.0   0.0    2.2  2  TAL_effector   TAL effector repeat


Domain annotation for each model (and alignments):
>> Peptidase_C14  Caspase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.7   0.0   4.1e-63   3.7e-59       1     242 [.      75     361 ..      75     365 .. 0.92

  Alignments for each domain:
  == domain 1  score: 200.7 bits;  conditional E-value: 4.1e-63
                    EEEEEEECSTTSSTCC-STTHHHHHHHHHHHHHHHTTEEEEEEEGGEES.......-CHHHHHHHHHHHHCHSGGTTESEEEEEEESEEET..... CS
  Peptidase_C14   1 kkAliIginnYpgtkaeLrGcanDaermaklLvkrlgFevenililtdd.......ptgknirkalkwlvksadhspgDslvvhysGHGtrvpae. 88 
                    +kAl+Igin Y g +++L Gc+nD ++m+++Lv+r+g+++++i+ ltdd       pt+ n+++a++wlvk+ +  pgD l++hysGHG+++p+  
     CCD25064.1  75 RKALLIGIN-YFGSRNQLSGCINDTQNMYNFLVQRYGYSPDDIVRLTDDqanpvcvPTRYNMLRAMSWLVKDVQ--PGDHLFLHYSGHGGQTPDLd 167
                    79*******.998999**********************************************************..**************999989 PP

                    .........EEECTTC.SSEEEHHHHHHTTSTTTHGGGTTS-EEEEEESES.SSBCBEEEEEEES-SSS........................... CS
  Peptidase_C14  89 .........civpvdv.nsliqdddirdlfggdklpslagkpktiiidaCr.gglldkgiekdtsptnk........................... 146
                             +i+pvd+ ++ + +dd+++ +++++l +++    t+++d+C+ g++ld ++  +t+   k                           
     CCD25064.1 168 gdeedgmddVIYPVDFeTQGFIVDDLMHDIMVRPLMQGV--TFTALFDSCHsGTVLDLPFTYSTKGVIKepnmwknigssglgaamayatgntsdl 261
                    99***************88888899999999********..***************9999999999999999999999999999999999999999 PP

                    .......HCCCHCHHHHHHCSHHCEEECTTTSEEEEESSSTTBSCEEETTTEE...HHHHHHHHHHHHHTTTSBHHHHHHHHHHHHCCTTTCTTSB CS
  Peptidase_C14 147 .......feedssskekkpekqslsklpseadvlllsgcqddqtSadgsengs...aftqalqkvleekggkislkellnkvrkrlkslkkkngyk 232
                            ++    ++  ++++ ++   s+ad+++lsg++d+qtSad+ e+g+   a+++a++kv++ + + +s+++ll+++r +l     +n+y+
     CCD25064.1 262 lgslrsiGNTVGGGNNGYDRQRVIQMKFSPADIIMLSGSKDNQTSADTFEDGQnigAMSHAFIKVMSYQPQ-QSYLSLLQNIRAEL-----MNKYS 351
                    9999996333445566667888999999**************************************44444.7*************.....579** PP

                    EEEEEEEEES CS
  Peptidase_C14 233 qrPglssndl 242
                    qrP+ls ++ 
     CCD25064.1 352 QRPQLSTSHP 361
                    ******9875 PP

>> TAL_effector  TAL effector repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00019       1.7      17      30 ..     105     119 ..     100     121 .. 0.88
   2 ?    1.3   0.0     0.051   4.6e+02      22      30 ..     289     297 ..     286     299 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00019
                   HHH.TT--HHHHHHH CS
  TAL_effector  17 Lrq.rGfSradIVkI 30 
                   L+q +G+S++dIV +
    CCD25064.1 105 LVQrYGYSPDDIVRL 119
                   8999*********86 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.051
                   --HHHHHHH CS
  TAL_effector  22 fSradIVkI 30 
                   fS+adI+ +
    CCD25064.1 289 FSPADIIML 297
                   9*****865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2598.12
//
Query:       CCD25065.1  [L=684]
Description: hypothetical protein NDAI_0E02480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.8e-53  179.9   0.1    7.8e-53  179.9   0.1    1.6  2  Hist_deacetyl    Histone deacetylase domain
  ------ inclusion threshold ------
       0.13   12.2   0.1       0.32   10.9   0.1    1.7  1  SF3a60_bindingd  Splicing factor SF3a60 binding domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.9   0.1   8.7e-57   7.8e-53       3     304 ..      68     430 ..      66     433 .. 0.86
   2 ?   -3.5   0.3      0.63   5.6e+03      46      72 ..     593     619 ..     562     648 .. 0.60

  Alignments for each domain:
  == domain 1  score: 179.9 bits;  conditional E-value: 8.7e-57
                    CGTHHHHHHHHHHHHT.THHHHCCE.....EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   3 enpkRlsaileslaesvglldelel....liqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaalla 94 
                    e+p+Rl a+   +  +  + + l++    +++  ++ + ++ kvH +++ +++ +l++e ++k    + e  +++    ++d+++s+kt++a + +
     CCD25065.1  68 ERPERLLACSMGISAAITMYPALFTlkssHNKMGSLLSPHVYKVHGSQWPKEILRLCKEADSKLAQGKLEVPDSW---NSGDIYLSSKTVQALQGS 160
                    777888887777777655555555455557777788888999******************999988888888888...479*************** PP

                    HHHHHHHHHHHHTT.....SSSEEEETTSS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT............ CS
                    xxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............ RF
  Hist_deacetyl  95 vgavleavdavlsg.....svkaafvlvrPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafys............ 173
                    +ga+ +avd + +g      +++afv++rPpgHH++  ++sGFC++Nn+++ai+y+++ + +++va+lD+D+HhG+Gt++++++            
     CCD25065.1 161 IGALETAVDSIFKGpspehISNRAFVAIRPPGHHCHFATPSGFCVLNNAHVAIEYAADSYDVTHVAVLDFDLHHGDGTQDICWKragfkpdeetke 256
                    ************995555333899***********************************************************8777777777777 PP

                    .............-TTEEEEEEEE-CCTSTT.SS--TT---SGGGTT........SEEEEEE-TT-BHHHHHHHH..................HHC CS
                    .............xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxx..................xxx RF
  Hist_deacetyl 174 .............dpdvltlSiHryegifyP.gtgaledlgegkgkg........fnlnvpleegtgdeeylkvf..................eei 229
                                  p+v ++S+H+   + +P ++g +++   ++++         +++n++l+  +++ee+ k++                  ++ 
     CCD25065.1 257 neeydgfgkklaeFPRVGYFSMHD--INSFPtESGFATKENIKNASTcimnshdlNIWNIHLSSWSNEEEFSKLYrskyrllfakadeffktaKSE 350
                    77777777766667**********..788**999999888867776677778888*******************9999999999997777555555 PP

                    HHHHHCCH--SEEEEEE-STTBTTS....TT-S-BB-HHHHHHHHHHHCCCHGS-.G..EEEEE-S---HHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 230 lrpvleefkPdlilvsaGfDalkgd....plgelnlsvegykeltkklaeladkv.k.kvvllleGGYnlealaravtavl 304
                    + ++ + fk  lil+saGfDa++ +    + +++n+ +e y+ +tk+ ++la+ + + kv++l+eGGY+++a+ ++v a+l
     CCD25065.1 351 MADMGKPFKG-LILLSAGFDASEFEqktmQRHSVNVPTEFYTMFTKDALKLAQMHcQgKVLSLMEGGYSDKAITSGVFAHL 430
                    5555666887.************9999999999********************99999************99999887775 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.63
                    HHHHHHHCHHHHCHHT.TTHCCHHHCC CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  46 eYlelleslsnelkkkeeakekeleei 72 
                    ++le+le ++++ +++e+ +  +++++
     CCD25065.1 593 RHLETLEIVQSDDEEEEQQSRSRSQRS 619
                    566666554444433333333222222 PP

>> SF3a60_bindingd  Splicing factor SF3a60 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.6e-05      0.32       2      15 ..       1      14 [.       1      16 [. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.6e-05
  SF3a60_bindingd  2 isggDpFseFYkrL 15
                     +s+ Dp+++FY+++
       CCD25065.1  1 MSTQDPLENFYRQF 14
                     79**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1324  (0.0738468); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4590.11
//
Query:       CCD25066.1  [L=1122]
Description: hypothetical protein NDAI_0E02490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.8e-36  124.2   1.8    6.2e-36  123.5   0.2    2.2  2  RhoGAP          RhoGAP domain
    9.3e-13   48.6   0.7    4.2e-12   46.5   0.2    2.5  2  PH              PH domain
     0.0015   18.5   1.4     0.0047   16.9   0.5    2.4  2  PX              PX domain
     0.0084   16.5   4.8      0.011   16.1   0.2    3.4  2  PH_11           Pleckstrin homology domain
  ------ inclusion threshold ------
       0.75    9.5   5.4         10    5.8   0.2    2.9  3  DUF4972         Domain of unknown function (DUF4972)


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.2   4.4e+03      82     107 ..     325     353 ..     312     355 .. 0.74
   2 !  123.5   0.2   1.7e-39   6.2e-36       1     146 [.     922    1086 ..     922    1089 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
                 HHHTSSSHHHHHHHHHHHHT...TS-HHH CS
      RhoGAP  82 eaaksedeeerlealkelle...kLPken 107
                 e+ ++++e+erl++ +el+     LPken
  CCD25066.1 325 EMEEAKEEKERLKEHEELVGtapLLPKEN 353
                 46677888999999999988666788887 PP

  == domain 2  score: 123.5 bits;  conditional E-value: 1.7e-39
                  BHHHHHHHHHHHH.HTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCT..............TTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHH CS
      RhoGAP    1 Piivekcvefiek.rgldtegiyRvsgskarvkelreafdkgkavds..............dleeedvhavaslLKrfLrelpepLltkelyeelie 82  
                  P++v++c+e+++k rg+++egi+R+sgs++ +k l+e+fd++++ d+               ++  +v+++++lLK++Lr+lp+ ++ +e+y  l +
  CCD25066.1  922 PSVVYRCLEYLYKnRGVQEEGIFRLSGSSTLIKTLQEKFDQEYDIDLcqynetiadpngdeVSTLVSVNTISGLLKLYLRKLPHMIFGDEQYLPLKK 1018
                  99***********899*****************************99***********99888899******************************8 PP

                  ..HHTSSSHHHHHHHHHHHHT..TS-HHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHHT- CS
      RhoGAP   83 ..aaksedeeerlealkelle..kLPkenrdtLryLlehLkrvaenskenkMtaknLaivfaPtLlrp 146 
                      +++d+ + + +l+e++   + Pken +++++L+e+L+++++n+k nkM+++nL+ivf+PtL  p
  CCD25066.1 1019 iiDDNHDDPLNTALQLREVVAngEIPKENLSLMYALFELLVKINANNKLNKMNVRNLCIVFSPTLNIP 1086
                  4444557888999*******9999*****************************************865 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.2   1.2e-15   4.2e-12       2     103 ..     669     772 ..     668     774 .. 0.89
   2 ?   -2.4   0.0         2   7.1e+03      17      55 ..     835     880 ..     823     901 .. 0.58

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 1.2e-15
                 EEEEEEEEETSSSSC...SEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC..TTSSSSTSEEEEEESTSSS...TEEEEEEESSHHH CS
          PH   2 vkeGwLlkkgsgkkk...swkkrwfvLkdsellyykndksekdkepkgsislsncevvevva..tedpkrkfcfelriverng...srtyllqasseee 92 
                 +keG+Ll ++++  +   +wk r+++L+++ l ++ +       ++ ++i l+++ ++  ++  +++ ++k+ f ++ + ++g   +++y+l+++++ e
  CCD25066.1 669 IKEGYLLIRKPKTLSnanNWKTRYCILTENTLQFFNKG------QLFETIRLKGAMMELLPNlpDDKYGTKNGFLINEHRKSGlssTTKYFLCTETSKE 761
                 79***7755555555588********************......9*************9999*778**********99988889767************ PP

                 HHHHHHHHHHH CS
          PH  93 rkeWikaiqsa 103
                 r+ Wi+ai++ 
  CCD25066.1 762 RELWISAISQF 772
                 ********986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2
                 SEEEEEEEEETTEEEEESST........TCTTESSEEEEEESTTEEE CS
          PH  17 swkkrwfvLkdsellyyknd........ksekdkepkgsislsncev 55 
                 + kkr f+ + ++l   ++d         +++ k+  +s++l+n + 
  CCD25066.1 835 RNKKRSFFPF-KKLTGIDYDnipphdleLKSPTKSSVRSVDLNNQTL 880
                 5566666666.556655555556644444444444455555555555 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.5   1.3e-06    0.0047      26      97 ..     567     638 ..     542     657 .. 0.81
   2 ?   -2.5   0.0       1.3   4.8e+03      57     102 ..     792     835 ..     771     842 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.3e-06
                 EEETTSSSEEEEEEEHHHHHHHHHHHHHHHT...TSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTS CS
          PX  26 velktgakewtvkRrYsdFeeLhskLlrkfp...rvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnh 97 
                 +  +tg+++++ ++  +   eL  +L+++      v+iP lP+++ f s   + +  i++rr+ L++y+++l+  
  CCD25066.1 567 IDKNTGKEMFKFSKTINKVRELDVYLKSHLTsnkLVTIPNLPDRSFFNS---NLPIRIDQRREILNKYFESLFDA 638
                 4445569**********************999999**********9987...99****************99865 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.3
                 TSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHHHH CS
          PX  57 rvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpelrn 102
                 r+ +  l+++v+  s   +++  i ++ ++ e +L+++  ++e r+
  CCD25066.1 792 RLYVTDLTSEVTSNS--TESNTGISSQTATYEPFLESIEDDKEVRR 835
                 666667777777766..78888889999999999998877777776 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.8       2.7   9.6e+03      46      60 ..     483     497 ..     450     519 .. 0.45
   2 !   16.1   0.2   3.2e-06     0.011       1     103 [.     670     770 ..     670     772 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.7
       PH_11  46 gseaklkadlisaal 60 
                  s      d  s+++
  CCD25066.1 483 ASTPNTTEDTASNQT 497
                 112222222222222 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 3.2e-06
       PH_11   1 vkGylkkkgsk......aWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlisaalfkidsirssksddllle.istetkifflkgdsn 92 
                 ++Gyl  +++k       Wk+r++ +l +  L+++++ +       i      ++ +   l++    k   +++   ++ +++ +s +tk f l +++ 
  CCD25066.1 670 KEGYLLIRKPKtlsnanNWKTRYC-ILTENTLQFFNKGQLFE---TI----RLKGAMMELLPNLPDDKYGTKNGFLINEHRKSgLSSTTKYF-LCTETS 759
                 589999999999999999******.**********9665554...22....23566666666666667777777555555554156777776.9***** PP

       PH_11  93 eeteeWvealk 103
                 +e+e W+ a+ 
  CCD25066.1 760 KERELWISAIS 770
                 ******99986 PP

>> DUF4972  Domain of unknown function (DUF4972)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       2.1   7.6e+03      37      54 ..      22      39 ..      18      47 .. 0.77
   2 ?    5.1   0.2    0.0047        17      81     124 ..      63     106 ..      57     108 .. 0.93
   3 ?    5.8   0.2    0.0029        10      53     109 ..     280     336 ..     269     343 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.1
     DUF4972 37 veevkteiyieqleelin 54
                 e++kt +yie+ ++  n
  CCD25066.1 22 SERDKTIEYIERTTDPTN 39
                578899999999887655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0047
     DUF4972  81 edaivklkesiakikegnkaeaeeeadrlikeakkaieeFkatv 124
                 e +i++lk++i  ++e+ k    e  d ++ ++ ++ ++  at+
  CCD25066.1  63 ETEIDSLKKTISLLRENRKSVNSESLDVILDQSSSISKDSDATR 106
                 679***************9999****************999997 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0029
     DUF4972  53 inkltdLrdesqyGekkgmYPeesraiLedaivklkesiakikegnkaeaeeeadrl 109
                    l  Lr  +  G+k  ++  +s+a L++  + l+ s  + +e++  ea+ee++rl
  CCD25066.1 280 KSPLAHLRRSTSSGKKSMEFSPNSKAKLNNFAQLLDTSFGEEEEAEMEEAKEEKERL 336
                 566899************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1217  (0.0678789); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.43
# Mc/sec: 7771.82
//
Query:       CCD25067.1  [L=272]
Description: hypothetical protein NDAI_0E02500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.5e-46  157.6  19.6      2e-24   87.4  14.3    2.1  2  TFIIA       Transcription factor IIA, alpha/beta subunit
     0.0043   15.9   1.8     0.0055   15.5   1.8    1.1  1  Presenilin  Presenilin
  ------ inclusion threshold ------
          4    7.1  12.7        6.2    6.5  12.7    1.2  1  Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   5.9   7.3e-24   4.4e-20       1     129 [.       9     163 ..       9     173 .. 0.67
   2 !   87.4  14.3   3.3e-28     2e-24     286     415 .]     130     271 ..     108     271 .. 0.57

  Alignments for each domain:
  == domain 1  score: 73.1 bits;  conditional E-value: 7.3e-24
       TFIIA   1 vYrsvIedVIesvredFeeeGvdeqvLeeLkqlWesKllqskaaefpwdpkpeeaqspqfvlqlpqslkqalqasaaaa.................... 79 
                 vY+ ++  VI++vredFe++G+deq+L++Lk++W+sKl+++k+++f+wd +  ++ ++++ +qlp + +  +++  a +                    
  CCD25067.1   9 VYELIVSSVINEVREDFENAGIDEQTLQDLKRVWQSKLTETKVTNFTWDEEVFPHVAATEGQQLPGAPQLIDSNLDA-Ngnpvtivkeeegqnlvlpgl 106
                 8************************************************9999999999999999777777654444.347888888888888888888 PP

       TFIIA  80 ..........sqapastsqslpslvipagksvqslta.nssaataatfslpakleppvqip 129
                           +  +++++++ p+ ++++++s + +++ n+++++++t++++ +++    +p
  CCD25067.1 107 iydsnstngvK--TENEKMNIPEPLMKKEESHSINQViNNASSANDTQDTEREQTD--DVP 163
                 88877666432..3333333333333333222222223333233333333322222..444 PP

  == domain 2  score: 87.4 bits;  conditional E-value: 3.3e-28
       TFIIA 286 alkakelekeskkkkraeessladlseilqlDGagddsdeeeee.eesdedsdsessdd...edeq......veEDplNSd.DDvdd.....eddddlf 368
                 + k+++ + ++  +++ ++++ ++++e  q D   +++++++ e + ++ ++++ +  +   ++++       + D + S+ DD+dd     e +dd  
  CCD25067.1 130 MKKEESHSINQVINNA-SSANDTQDTEREQTDDVPESTSPQQIElTIENANDKTID--QlrlQEKKakrsalLDNDEVGSElDDSDDdylisEGEDD-G 224
                 2222222222221111.112222555566666655555552222022222211111..11222222355677*************993333222222.4 PP

       TFIIA 369 dtdnvivCqYDKvhRsKNKWKftLKDGvmtvnGkdYVFsKAiGeaEW 415
                  ++n+++C+YDKv+R+K +WK+ LKDG++t+  kdY F+KA+ eaEW
  CCD25067.1 225 PDENLMLCLYDKVTRTKARWKCSLKDGIVTIAHKDYSFQKAQVEAEW 271
                 4566******************************************* PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.8   9.3e-07    0.0055     203     297 ..      95     190 ..      89     235 .. 0.48

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.3e-07
  Presenilin 203 aqerneeifpaLiYsatvvvlaaeek...kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsse.........seeeseeesseaessaees 289
                  +e ++ ++p LiY+++ +  +++e+   +   ++  ++ee+++ ++ ++++s+++++++++ e+++   e         +           e++++++
  CCD25067.1  95 EEEGQNLVLPGLIYDSNSTNGVKTENekmN-IPEPLMKKEESHSINQVINNASSANDTQDTEREQTDDVPEstspqqielT----------IENANDKT 182
                 456777889**********99877664321.12222222223333333333333222222222222222221122222221..........22222222 PP

  Presenilin 290 seekesee 297
                  ++ + +e
  CCD25067.1 183 IDQLRLQE 190
                 22111111 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  12.7     0.001       6.2      43     161 ..     114     242 ..     109     250 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.001
                 T--HHHHHHS-HHHHHHHHHHHHHHHHH---------------------------------.----....----------------------......- CS
  Cwf_Cwc_15  43 qgteeelekrdlraeLeeaeaeakakkrkkaeleaeeeeekekkeeeeeeeeeeakrrkee.lleea..reidaddedseeeeeeeeeesdd......d 132
                 +g ++e+ek ++ + L ++e++++ ++  +++++a++++++e++++++    e++  ++ e ++e+a  ++id+   ++++ +++   ++d+      d
  CCD25067.1 114 NGVKTENEKMNIPEPLMKKEESHSINQVINNASSANDTQDTEREQTDDVP--ESTSPQQIElTIENAndKTIDQLRLQEKKAKRSALLDNDEvgseldD 210
                 6778899999***********99999877555555544333333333333..33333332323333212355555544444333333333332222212 PP

                 ----...------------------------- CS
  Cwf_Cwc_15 133 sdsd...sdddddedetaeLlrELekikrera 161
                 sd+d   s+ +dd  +++ +l  ++k+ r +a
  CCD25067.1 211 SDDDyliSEGEDDGPDENLMLCLYDKVTRTKA 242
                 22222222223333344444445566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1118  (0.0623571); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1968.35
//
Query:       CCD25068.1  [L=409]
Description: hypothetical protein NDAI_0E02510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-33  115.9   0.0    2.3e-33  115.1   0.0    1.4  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
  ------ inclusion threshold ------
      0.036   13.7   0.0      0.048   13.3   0.0    1.2  1  2-Hacid_dh    D-isomer specific 2-hydroxyacid dehydrogenase, 


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   2.5e-37   2.3e-33      32     178 .]     226     376 ..     209     376 .. 0.89

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 2.5e-37
                   S-GTTSEEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHHHHH...CHHHHTCEECSHHHHHHH-SEEEE-S--STTTTTSBSHHHHHCSTTTEEEE CS
  2-Hacid_dh_C  32 kelsgktvGiiGlGrIGqavakrlk.afgmkviaydrskkkee...eeeelgvelvsleellaesDivslhlpltpetrhlinaeelakmkkgaili 124
                   ++ ++k v i+G+G+IGqa+  +lk  f+m+v +y+rs   ++     +++  +  + +e + +s  ++l+lp +++t++lin+++l+++++g+ +i
    CCD25068.1 226 ESPTNKSVLILGFGSIGQAIGSKLKtLFNMEVNYYKRSGPISKsqlGYAATYWDSLDNKETWYSSHLIILCLPSNESTTNLINKKTLQMCRDGVRII 322
                   56789********************89***********99776433333333344455699************************************ PP

                   ESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C 125 NtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   N++RG+ +de+aLle L +gkia ++lDv++ e    ++ l++   v+  PHi+
    CCD25068.1 323 NVGRGACIDEDALLEGLSNGKIASCGLDVYKDETTLVRKDLIQRWDVTALPHIG 376
                   *********************************999999*************98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   5.3e-06     0.048      56     124 ..     102     398 ..      93     409 .] 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.3e-06
                 HHHH.TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH................................................... CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................................................... RF
  2-Hacid_dh  56 leal.pkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt................................................... 102
                 ++++ +++   +   vG + ++l++++e++i+V+n+    ++ v+E++                                                   
  CCD25068.1 102 IKKFpSSITSLMVPWVGCEFLNLKLLNEKNIKVCNIGPHAANYVCEVAihlvlscfrmtsfwehcfkyvdvgeikeckkyigskqqsthgkndwptkid 200
                 6666666777777789*********************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  CCD25068.1 201 pknelviptrwdtsygvggydtklfesptnksvlilgfgsigqaigsklktlfnmevnyykrsgpisksqlgyaatywdsldnketwysshliilclps 299
                 *********************************************999999999999999999999999999999999999999999999999999999 PP

                 .............................................................................T-BHHHHHHHHHHHHHHHHHHH CS
                 .............................................................................xxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 .............................................................................aaTeeaqeniaeeaaenlvafl 124
                                                                                              + + + +++  e++++n+++f+
  CCD25068.1 300 nesttnlinkktlqmcrdgvriinvgrgacidedalleglsngkiascgldvykdettlvrkdliqrwdvtalphigSTSLQEIKEQTEITLKNIESFF 398
                 999999999999999999999999999999999999999999999999999999999999999999999999998877777888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3101.53
//
Query:       CCD25069.1  [L=419]
Description: hypothetical protein NDAI_0E02520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-06   25.2   6.1    2.1e-05   24.1   3.5    2.1  2  PEX11     Peroxisomal biogenesis factor 11 (PEX11)
  ------ inclusion threshold ------
       0.11   13.1   1.3        2.5    8.7   0.1    2.3  2  DUF3597   Domain of unknown function (DUF3597)


Domain annotation for each model (and alignments):
>> PEX11  Peroxisomal biogenesis factor 11 (PEX11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.024   2.1e+02       6      54 ..      90     138 ..      85     140 .. 0.80
   2 !   24.1   3.5   2.3e-09   2.1e-05      48     223 .]     177     407 ..     161     407 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.024
       PEX11   6 kflaqtqgrDKllRalqYasrllayllerkgsskelvkklkklesqfsl 54 
                  ++++ +g+DK ++++     ll     +  ss e+  k+kkl  ++s+
  CCD25069.1  90 YLINSLAGKDKFVKIIKCILDLLKSWILTDLSSTETNIKMKKLLLSLST 138
                 5679999*********999999988888888888888888888666665 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 2.3e-09
       PEX11  48 lesqfslsRKllRlg....kflehlqaaaklld.nkle..dpvlrllavlrnlgyalYlllDhvlwlkklgllkvknak..klsrlssrfwlfglvlsl 137
                 + sq+s +R + R+g    k l+ +++++++ + ++l+  +++    + l+ + +  Y ++D++ +l kl++ + ++++  ++ +  + +w + ++ls 
  CCD25069.1 177 ITSQLSIFRYMIRFGsspfKLLTFVKKLRSTTKaTNLNdiEKLWLNEKSLQDSIDLYYTIFDELDLLYKLKIWNPQERTysWVTKHETIAWQYDILLSW 275
                 56777777777777532224455555555555555555444666667899***************************99999999************** PP

       PEX11 138 vrdlyelrllqekekklkkek......................kekeereeek................................laavlkkrpallld 182
                  ++  +l+  q+k+ +l+ +                       +        +                                l +++ +++ ++ld
  CCD25069.1 276 KQNWFKLKDIQRKILELQIQLkirndtmlasnyfnnnnnsndnT--------DntsplrkqliseiqqngnnndlssleieldnqLVNLNHEKRIVYLD 366
                 **************9998776999********998654333220........2456777888888888888899999********************** PP

       PEX11 183 lvknllDllialnelgilklsdgvvGlaGliSSllgllqlw 223
                 l + + D l   ++l  +k+++g+ +++ l S + g  +lw
  CCD25069.1 367 LTRLSFDCLANTTDLLNIKTPKGTYAALSLCSGITGFIKLW 407
                 *************************************9999 PP

>> DUF3597  Domain of unknown function (DUF3597)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.015   1.4e+02      36      79 ..      70     114 ..      36     142 .. 0.69
   2 ?    8.7   0.1   0.00028       2.5      84     117 ..     321     354 ..     318     359 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.015
                 .---------SS......EE-HHHHHHHHHHHSS---TTT-HHHHHHH CS
     DUF3597  36 aaaaPaaaaaaaaa....vdveavlealaaksgeklnwrtSivDLlkl 79 
                 + a+P+++ +   +    vd+ + l +  a +++ +   + i DLlk 
  CCD25069.1  70 SWAKPESKIK---KvvrnVDILKYLINSLAGKDKFVKIIKCILDLLKS 114
                 3445544433...03345******99999999999***********95 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00028
                 -SHHHHHHHHHHHT---SS-HHHHHHHHHHHHHH CS
     DUF3597  84 sslaaRkeLAkeLgytgdtddsAemniwLhkqvm 117
                 ++   Rk+L +e++ +g+++d ++ +i L +q++
  CCD25069.1 321 NTSPLRKQLISEIQQNGNNNDLSSLEIELDNQLV 354
                 55567************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       977  (0.0544927); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3145.82
//
Query:       CCD25070.1  [L=326]
Description: hypothetical protein NDAI_0E02530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-74  248.5   0.0      1e-73  248.3   0.0    1.0  1  Arginase  Arginase family


Domain annotation for each model (and alignments):
>> Arginase  Arginase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.3   0.0   5.7e-78     1e-73       2     277 ..      16     320 ..      15     322 .. 0.85

  Alignments for each domain:
  == domain 1  score: 248.3 bits;  conditional E-value: 5.7e-78
                 EEEEEEEE--TTTSSSGGGGGHHHHHHHHHHTSBT.HCHEETTTTE..SCCSEEE.........EEEEEE--........SSCHHHHHHHHHHHHHHHH CS
    Arginase   2 dvallGvPfdaagsgrpGarfGPraireasarlee.aleynlelgv..leelkiv.........dlgdvavt........pvdneevleqieeavaeil 80 
                 +++++ +Pf++ g+ r+G+++GP++++++  + +  +l++++      ++    +         d      +        p    +v++ i+e+v + l
  CCD25070.1  16 RLSIITAPFSG-GQSRSGVEKGPKYMLNHGLQNSLtKLGWSTVITEplSS----AilqikkdemD-----QNdrmgivkrPNLVGKVTKLIYETVTKSL 104
                 5789*******.*****************666654344444433323311....12222232221.....22555543333344556************ PP

                 HTTCEEEEEESSGGGHHHHHHHHHHHHSTTEEEEEESSS----SSCTTTBSSSTTSHHHH...............HHHHTSECGCEEEEEEE-STCSHH CS
    Arginase  81 kagklpivlGGDHsialgilralaekygkplgvihfDAHaDlrtpetegsgnshGtpfrr...............aaeegllkpkklvqiGirsvdnee 164
                 +++++p++lGGDHsia+g+++a+ +k++ ++g++++DAHaD++t  +++sgn hG+p+++               ++  g lkp+k+++iG+r++d++e
  CCD25070.1 105 SNERFPLTLGGDHSIAMGTVSAVIDKFP-DAGLLWIDAHADINTLTSTDSGNLHGCPVSFlmglndkkmvpesmeWI-PGNLKPNKIAYIGLRDIDEGE 201
                 **************************98.6********************************************988.9******************** PP

                 HHHHHHTTSEEEEHHHHHHHHHHHHHHHHHHHH...TCTTSEEEEEEEGGGBBTTTSTSSSS-BSS-B-HHHHHHHHHHHHCHSEEEEEEEE-B-GGGS CS
    Arginase 165 yelakelgirvitmreidelglkavveeilerv...gaeedpvylSfDiDvlDpavaPGtGtpepgGltlrellallrelaeklnlvgaDvvEvnPald 260
                 ++++k+lgi +++m+++d+lg+++v+e++++++   +++++p+++S+D+D+lDp ++P+tGtp++gGltlre l l+++lae++nlvg+D+vEvnP+l 
  CCD25070.1 202 KKILKNLGIAAFSMYHVDRLGINEVIEMAMRAIhpeTNGDGPIMCSYDVDALDPLYVPATGTPVRGGLTLREGLFLVERLAETGNLVGLDIVEVNPDLA 300
                 *********************************65433778*********************************************************9 PP

                 STT...THHHHHHHHHHHHH CS
    Arginase 261 tea...eqtarlaarlvrel 277
                 +++   + t ++ ++++r++
  CCD25070.1 301 SKDdhvSDTIATSCSIARCA 320
                 97777778888888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       331  (0.0184617); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2451.64
//
Query:       CCD25071.1  [L=1201]
Description: hypothetical protein NDAI_0E02540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-77  260.2   0.2    1.1e-76  258.1   0.0    2.2  2  GDPD      Glycerophosphoryl diester phosphodiesterase family
    4.8e-36  123.2   8.9      7e-14   52.2   0.1    4.2  5  Ank_2     Ankyrin repeats (3 copies)
    2.4e-19   67.4   1.7     0.0077   16.7   0.0    7.2  7  Ank_3     Ankyrin repeat
    5.3e-19   68.3   0.0     0.0023   18.5   0.0    5.8  5  Ank_4     Ankyrin repeats (many copies)
    1.4e-17   63.5   0.0    0.00021   21.5   0.0    5.2  4  Ank_5     Ankyrin repeats (many copies)
    1.6e-11   44.8  10.1    4.8e-07   30.0   3.4    4.2  5  SPX       SPX domain
    1.6e-11   44.1   1.4      0.083   13.4   0.0    6.2  6  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.87   2.2e+03      58     107 ..     240     296 ..     216     332 .. 0.77
   2 !  258.1   0.0   4.1e-80   1.1e-76       1     258 [.     849    1186 ..     849    1187 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.87
                 BGGGS-HHHHHTSTECCTTCCCCSCCCSSGCC.......B...BHHHHHHHHHHCCS CS
        GDPD  58 dvkdltleelkrldkiakenkaqlsenrvrle.......fpfptleevlkkpqnvgl 107
                  + dl  +++++  +i+ ++++q+++ ++++        + +  lee +k++++   
  CCD25071.1 240 EILDLKANKFQNVPPIEERKSRQYKQLQFPGSidccikeDNVEDLEEEIKRIKDRTE 296
                 666777777888888888888888888888889999999999999999987554444 PP

  == domain 2  score: 258.1 bits;  conditional E-value: 4.1e-80
                  TTTTTTTSS........TTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTST.................. CS
        GDPD    1 HRGasgnlp........EnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrld.................. 71  
                  HRG+++n+         EnT+esf++A +lGa y+EfDvqlTkD++pV++HDf++++t+++ +   +++ltle++ +l+                  
  CCD25071.1  849 HRGFGMNRKlsnslqlgENTMESFIAASSLGAAYVEFDVQLTKDNIPVIYHDFTIAETGVDIP---MHELTLEQFLELNnmdkhmkggksgsvfekk 942 
                  ***************************************************************...******************************* PP

                  ........................................................ECCTTCCCCSCCCSSGCCB...BHHHHHHH.HHHCCSEEEE CS
        GDPD   72 ........................................................kiakenkaqlsenrvrlefpfptleevlkk.pqnvglniei 111 
                                                                          k ak+ k++++++ +   ++f+tl e++kk p++vg+nie+
  CCD25071.1  943 rrhsladfdiehsnndkndpdynnnnnenngddptqyadifsrnwigdrmrltktfK-AKQFKGNSRGHSIA--SSFVTLPELFKKlPPHVGFNIEC 1036
                  ***********************************7777777777666666666533.35555666666653..9********************** PP

                  EEECCCCCCCHHHHHHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCTCTEEEEEEHHHHHHC-E....EECHCCCCCCCTCCCCHH CS
        GDPD  112 kipmlseakeeeelqivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqpklpllflteggteaead...ssleraakfakadallgev 205 
                  k+pm +ea+ee  + i  e++++vd++l  v +++++r++i+ssf+pd +++l+ kqp+lp+lflte g  ++ d   +sl++a+kfa  ++llg+v
  CCD25071.1 1037 KYPMIDEAEEEGIGPITIEMNHWVDTVLRHVYDNMNGRDIILSSFHPDVCIMLSLKQPSLPVLFLTEAGCMKMVDaraASLQNAIKFAHHWNLLGIV 1133
                  ************************************************************************************************* PP

                  CCCHCCCEB.CHHHHHHHTT-EEEEBSB-THSHHHHHHHHCCC-SEEEES-HH CS
        GDPD  206 savaeglgdpdlVkraksrglvvhvytvnnedeeemkrlleagvdgvitDfpd 258 
                  sa+++ +++p+lV+ +k +glv+++y+v n+d ++ ++ ++agvd+vi+D++ 
  CCD25071.1 1134 SAAKPIIKAPRLVEVIKGNGLVCVTYGVENNDPNNAQIEIDAGVDAVIVDSVL 1186
                  **************************************************986 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.2   2.7e-08   6.9e-05       3      73 ..     310     406 ..     307     414 .. 0.68
   2 ?    4.0   0.0      0.03        76      56      76 ..     435     456 ..     423     463 .. 0.76
   3 !   32.7   0.7   3.4e-11   8.6e-08       1      82 [.     436     528 ..     436     529 .. 0.81
   4 !   52.2   0.1   2.7e-17     7e-14       2      82 ..     469     562 ..     468     563 .. 0.85
   5 !   45.0   0.0   4.9e-15   1.3e-11      13      75 ..     515     589 ..     514     596 .. 0.87

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.7e-08
       Ank_2   3 lAakngnlelvklLleg.......adpn..k........ngktaLhyAakngnleivklLleh...........adndgrtpLhyAarsghleivklLl 73 
                  A++n++ +++++Lle        +d+n  +         +k++L+  akn+ +++++ +l +            d++ rtpLhyA+++g +++ k+Ll
  CCD25071.1 310 KASLNESQKCIDYLLEIvptlndeTDINnrNffhhyvilMNKNPLY--AKNNVVDVLSSILGKlkreqsiyllqRDDYKRTPLHYACQYGLYDLTKVLL 406
                 5777776789999993334555556666441333456676678887..677666666555543445567778756699******************999 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.03
       Ank_2  56 pLhyAarsghleivklLlek.g 76 
                 pLh+A+ sg  e++++ l++  
  CCD25071.1 435 PLHLAILSGDVETLQVILDStT 456
                 8999999999999988887634 PP

  == domain 3  score: 32.7 bits;  conditional E-value: 3.4e-11
       Ank_2   1 LhlAakngnlelvklLl..egadpnk.ngktaLhyAakngnlei.vklLleh....ad....ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 LhlA+++g+ e+++ +l    ++ +  +++   h+A+k ++ e+ v+ Ll+     ++    ++ +t+L++A++ + + +vklLl++g+d +lk
  CCD25071.1 436 LHLAILSGDVETLQVILdsTTCEKGVlDNLQLTHLAIKLNQ-EClVERLLQSnkfdVNyqeeESQETALYLACKLNCPTTVKLLLQHGVDTELK 528
                 8*******99*******653355442589*********986.776999998446674454577799*******99*************997765 PP

  == domain 4  score: 52.2 bits;  conditional E-value: 2.7e-17
       Ank_2   2 hlAakngnlelvklLl..egadpn.k...ngktaLhyAakngnleivklLleh.ad......ndgrtpLhyAarsghleivklLlekgadinlk 82 
                 hlA+k ++  lv+ Ll  +++d+n +     +taL++A+k ++  +vklLl+h +d        g+tpL++Aa +g++ei k L++++++++++
  CCD25071.1 469 HLAIKLNQECLVERLLqsNKFDVNyQeeeSQETALYLACKLNCPTTVKLLLQHgVDtelkegIFGWTPLFIAATEGYFEITKHLIDYNCKMEVF 562
                 8999976567******999999998346788************99*******995544544555*********************999988776 PP

  == domain 5  score: 45.0 bits;  conditional E-value: 4.9e-15
       Ank_2  13 vklLl.egadpn.k...ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLl.ek 75 
                 vklLl +g+d + k   +g+t+L++Aa +g+ ei k L+++      +d+ g+tp+ +A+  ghlei++lL  e+
  CCD25071.1 515 VKLLLqHGVDTElKegiFGWTPLFIAATEGYFEITKHLIDYnckmevFDEGGWTPMEHAVLRGHLEIAELLTiEN 589
                 99***999998884578***********************77787777799*******************98554 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         7   1.8e+04       9      23 ..     311     325 ..     306     329 .. 0.66
   2 !   14.0   0.0   2.2e-05     0.057       2      22 ..     386     406 ..     385     411 .. 0.89
   3 !    5.9   0.0    0.0098        25       5      23 ..     435     453 ..     435     458 .. 0.92
   4 ?    3.0   0.0     0.086   2.2e+02       7      30 ..     469     492 ..     467     492 .. 0.95
   5 !   16.7   0.0     3e-06    0.0077       2      28 ..     499     524 ..     498     527 .. 0.93
   6 !   11.5   0.0   0.00015      0.37       2      27 ..     533     557 ..     532     561 .. 0.90
   7 !    8.0   0.0     0.002       5.1       2      21 ..     566     585 ..     565     594 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 7
       Ank_3   9 AarsgnleivkfLle 23 
                 A ++ + + +++Lle
  CCD25071.1 311 ASLNESQKCIDYLLE 325
                 555555556999998 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 2.2e-05
       Ank_3   2 GetpLhlAarsgnleivkfLl 22 
                  +tpLh+A+ +g +++ k Ll
  CCD25071.1 386 KRTPLHYACQYGLYDLTKVLL 406
                 69*************988887 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0098
       Ank_3   5 pLhlAarsgnleivkfLle 23 
                 pLhlA++sg++e ++ +l+
  CCD25071.1 435 PLHLAILSGDVETLQVILD 453
                 8**********99999997 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.086
       Ank_3   7 hlAarsgnleivkfLlenkgadvn 30 
                 hlA++ +  ++v+ Ll+ +  dvn
  CCD25071.1 469 HLAIKLNQECLVERLLQSNKFDVN 492
                 99***************9999998 PP

  == domain 5  score: 16.7 bits;  conditional E-value: 3e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgad 28 
                 +et+L+lA++ ++++ vk+Ll+ +g+d
  CCD25071.1 499 QETALYLACKLNCPTTVKLLLQ-HGVD 524
                 69********************.8*99 PP

  == domain 6  score: 11.5 bits;  conditional E-value: 0.00015
       Ank_3   2 GetpLhlAarsgnleivkfLlenkga 27 
                 G+tpL++Aa  g +ei k L++ +++
  CCD25071.1 533 GWTPLFIAATEGYFEITKHLID-YNC 557
                 9********************9.554 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.002
       Ank_3   2 GetpLhlAarsgnleivkfL 21 
                 G+tp+ +A++ g+lei+++L
  CCD25071.1 566 GWTPMEHAVLRGHLEIAELL 585
                 9**************77666 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.8e-05      0.15      14      55 .]     361     406 ..     354     406 .. 0.71
   2 ?    4.2   0.0     0.027        69      38      53 ..     435     450 ..     411     456 .. 0.74
   3 !   16.7   0.0   3.3e-06    0.0085       6      44 ..     469     508 ..     464     510 .. 0.88
   4 !   18.5   0.0   8.9e-07    0.0023       8      54 ..     506     552 ..     506     553 .. 0.87
   5 !   10.4   0.0   0.00029      0.76      32      54 ..     563     585 ..     551     586 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.8e-05
       Ank_4  14 lelvrlLlekgad.....inaqdnrsGetalhiAakrgnveilklLl 55 
                 ++++ ++l k +      +  + +++ +t+lh+A++ g ++ +k Ll
  CCD25071.1 361 VDVLSSILGKLKReqsiyLLQR-DDYKRTPLHYACQYGLYDLTKVLL 406
                 5666666655444444333445.999************999999987 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.027
       Ank_4  38 alhiAakrgnveilkl 53 
                 +lh A++ g+ve l+ 
  CCD25071.1 435 PLHLAILSGDVETLQV 450
                 6666666666666654 PP

  == domain 3  score: 16.7 bits;  conditional E-value: 3.3e-06
       Ank_4   6 hyaaisgrlelvrlLlek.gadinaqdnrsGetalhiAak 44 
                 h a++ +++ lv++Ll++ + d+n+q  +s+etal+ A+k
  CCD25071.1 469 HLAIKLNQECLVERLLQSnKFDVNYQEEESQETALYLACK 508
                 88888999999*****7669******99**********96 PP

  == domain 4  score: 18.5 bits;  conditional E-value: 8.9e-07
       Ank_4   8 aaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklL 54 
                 a++ ++  +v+lLl++g+d      + G+t+l iAa  g++ei+k L
  CCD25071.1 506 ACKLNCPTTVKLLLQHGVDTELKEGIFGWTPLFIAATEGYFEITKHL 552
                 677888899**********66666799***************99866 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00029
       Ank_4  32 nrsGetalhiAakrgnveilklL 54 
                 ++ G+t++ +A++rg++ei++lL
  CCD25071.1 563 DEGGWTPMEHAVLRGHLEIAELL 585
                 789******************98 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.3e-06    0.0085      11      36 ..     381     406 ..     371     413 .. 0.82
   2 ?    3.7   0.0     0.033        85      11      37 ..     427     458 ..     423     466 .. 0.78
   3 !   21.5   0.0   8.2e-08   0.00021       3      53 ..     486     537 ..     483     537 .. 0.89
   4 !   17.0   0.0   2.1e-06    0.0054      18      56 .]     535     573 ..     531     573 .. 0.95

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.3e-06
       Ank_5  11 rldgggntpLhvAakygaadvvrlLl 36 
                  +d ++ tpLh+A+ yg  d+ ++Ll
  CCD25071.1 381 QRDDYKRTPLHYACQYGLYDLTKVLL 406
                 4566666******************9 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.033
       Ank_5  11 rldgggntpLhvAakygaadvvrlLl.....a 37 
                 ++d ++  pLh+A+  g  + ++++l     +
  CCD25071.1 427 WEDYESLVPLHLAILSGDVETLQVILdsttcE 458
                 8899999********99999999998444444 PP

  == domain 3  score: 21.5 bits;  conditional E-value: 8.2e-08
       Ank_5   3 ehgpadvnrldgggn.tpLhvAakygaadvvrlLlargadlnltdsrG.ltal 53 
                 ++   dvn+++++++ t+L +A+k ++++ v+lLl +g+d+ l+++   +t+l
  CCD25071.1 486 SNK-FDVNYQEEESQeTALYLACKLNCPTTVKLLLQHGVDTELKEGIFgWTPL 537
                 555.89********99****************************986667776 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 2.1e-06
       Ank_5  18 tpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 tpL +Aa  g++++ + L+++++   + d+ G+t++++A
  CCD25071.1 535 TPLFIAATEGYFEITKHLIDYNCKMEVFDEGGWTPMEHA 573
                 9************************************98 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   3.4   1.9e-10   4.8e-07       1      56 [.       1      56 [.       1      75 [. 0.75
   2 !    4.7   1.5    0.0095        24     185     215 ..      79     109 ..      70     114 .. 0.91
   3 !   28.3   0.5   6.3e-10   1.6e-06     345     382 ..     177     214 ..     162     216 .. 0.88
   4 ?   -1.8   0.5      0.87   2.2e+03     103     119 ..     617     633 ..     578     695 .. 0.47
   5 ?   -2.4   0.4       1.3   3.3e+03     106     133 ..     945     972 ..     919    1015 .. 0.57

  Alignments for each domain:
  == domain 1  score: 30.0 bits;  conditional E-value: 1.9e-10
         SPX  1 MKFakeLeenlvpEWrdaYldYkqLKKlIkkvqreleslgleaetlrellnrpeds 56
                MKF+k++ +   p    +YldYk+LK  Ik++  ++e+l +e  + +e++  p+ +
  CCD25071.1  1 MKFGKTFSSYQTPKYSTQYLDYKGLKQIIKEIIIQQEELYQEEHSNKENETNPQRK 56
                **********************************8885555444444444444433 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0095
         SPX 185 eFferLdseLnkvetFykakeeefterlesL 215
                 +F   Ld  L+k+++Fy  +  e  ++l+ L
  CCD25071.1  79 QFSFKLDRNLEKIDNFYNNRFAEYSRQLQRL 109
                 78889***************99999999988 PP

  == domain 3  score: 28.3 bits;  conditional E-value: 6.3e-10
         SPX 345 rgLelLKsYqeLNrtAFrKIlKKfDKvtaltaskrymk 382
                 ++  +L +Y+ LN+ ++ KIlKKfDK +++  +++y+ 
  CCD25071.1 177 KQFNDLNKYAQLNKRGIIKILKKFDKKVGTSQQQSYLA 214
                 56789*****************************9986 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.87
         SPX 103 ssrssssygglvsspps 119
                 +s++sss g++++s++s
  CCD25071.1 617 DSSESSSLGASKNSKSS 633
                 11111111111111111 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 1.3
         SPX 106 ssssygglvssppsansssssddssesn 133
                 +s++  ++++s+++ n+++ +++++e+n
  CCD25071.1 945 HSLADFDIEHSNNDKNDPDYNNNNNENN 972
                 2233333333333333333333333333 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         7   1.8e+04      18      28 ..     305     314 ..     304     315 .. 0.84
   2 !   13.4   0.0   3.2e-05     0.083       3      22 ..     387     406 ..     385     411 .. 0.89
   3 ?    2.7   0.0     0.075   1.9e+02       5      22 ..     435     452 ..     434     464 .. 0.81
   4 !   10.5   0.0   0.00026      0.67       4      27 ..     501     525 ..     499     529 .. 0.89
   5 !    8.8   0.0   0.00092       2.3       2      22 ..     533     553 ..     532     559 .. 0.90
   6 ?    0.8   0.0      0.32   8.1e+02       2      21 ..     566     585 ..     565     601 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7
                 HHHHHTTTSTT CS
         Ank  18 iklLLhGAnln 28 
                 +klLL  A+ln
  CCD25071.1 305 VKLLL-KASLN 314
                 89***.88887 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.2e-05
                 BBHHHHHHHHTTHHHHHHHH CS
         Ank   3 nTPLHlAatngkkriiklLL 22 
                 +TPLH+A+++g  + +k LL
  CCD25071.1 387 RTPLHYACQYGLYDLTKVLL 406
                 7**********999*99887 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.075
                 HHHHHHHHTTHHHHHHHH CS
         Ank   5 PLHlAatngkkriiklLL 22 
                 PLHlA+  g+++ ++ +L
  CCD25071.1 435 PLHLAILSGDVETLQVIL 452
                 9*****888877777666 PP

  == domain 4  score: 10.5 bits;  conditional E-value: 0.00026
                 BHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnl 27 
                 T+L lA+  + +  +klLL hG + 
  CCD25071.1 501 TALYLACKLNCPTTVKLLLqHGVDT 525
                 9******999999******99*876 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.00092
                 SBBHHHHHHHHTTHHHHHHHH CS
         Ank   2 GnTPLHlAatngkkriiklLL 22 
                 G+TPL +Aat+g  +i+k L+
  CCD25071.1 533 GWTPLFIAATEGYFEITKHLI 553
                 9*****************999 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.32
                 SBBHHHHHHHHTTHHHHHHH CS
         Ank   2 GnTPLHlAatngkkriiklL 21 
                 G+TP   A+ +g+++i++lL
  CCD25071.1 566 GWTPMEHAVLRGHLEIAELL 585
                 89999999*99*******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       920  (0.0513135); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.82u 0.29s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 7890.19
//
Query:       CCD25072.1  [L=699]
Description: hypothetical protein NDAI_0E02550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-19   68.2   0.1    5.8e-18   65.2   0.0    2.4  2  ABC1      ABC1 family


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   3.2e-22   5.8e-18       6     118 ..     226     359 ..     223     360 .. 0.90
   2 ?   -2.4   0.0      0.29   5.2e+03      53      84 ..     445     476 ..     437     481 .. 0.78

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 3.2e-22
        ABC1   6 kleeiFaefdeePiAaASiaqVhrAklks............ge.........eVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdef 83 
                 +l e F+e++e+P++++ iaqV+ Akl++            g+           a+K+ +p+v+k+i++Dl+++ ++a++++++++   l+l   v++f
  CCD25072.1 226 ELGEAFDEINEKPLGVGAIAQVYVAKLSElfvkkhnvitnnGNgngndannrWCAIKIIHPNVRKQISRDLKIMDFFARCINSLPNMEWLSLPDEVEQF 324
                 57799**********************98788877777666115566777779*****************************9999998********** PP

        ABC1  84 skslleEldferEAknaekfrenfaklkevkvPkv 118
                 s  +  +ld++ EA n ++f+enf+++ ++k+ +v
  CCD25072.1 325 SILMNLQLDLRIEALNLKRFNENFKNDLQIKFANV 359
                 ***************************99998877 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.29
        ABC1  53 sDlellkllakllkkflkelrldleelvdefs 84 
                  D+++++ l k ++k  +e+ l+l++++++++
  CCD25072.1 445 DDFKVTHSLRKKFEKQDPEFILELKHVLENYT 476
                 58888888889999999999888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4864.06
//
Query:       CCD25073.1  [L=183]
Description: hypothetical protein NDAI_0E02560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-76  253.1   0.1    1.1e-75  252.9   0.1    1.0  1  Arf        ADP-ribosylation factor family
    1.5e-15   57.5   0.0    1.9e-15   57.1   0.0    1.2  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    2.8e-11   43.2   0.0    3.2e-11   43.0   0.0    1.2  1  SRPRB      Signal recognition particle receptor beta subunit
    7.4e-11   41.9   0.0    8.4e-11   41.7   0.0    1.1  1  Ras        Ras family
    6.9e-10   38.6   0.3    6.7e-06   25.5   0.0    2.3  2  G-alpha    G-protein alpha subunit
    1.3e-09   37.8   0.0    1.6e-09   37.5   0.0    1.1  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
    0.00013   22.1   0.0    0.00019   21.5   0.0    1.4  1  MMR_HSR1   50S ribosome-binding GTPase
     0.0002   20.9   0.1     0.0018   17.9   0.0    2.0  2  GTP_EFTU   Elongation factor Tu GTP binding domain
    0.00095   19.7   0.4     0.0036   17.8   0.4    1.7  1  ABC_tran   ABC transporter
     0.0059   15.6   0.6       0.19   10.7   0.2    2.6  2  MeaB       Methylmalonyl Co-A mutase-associated GTPase MeaB
  ------ inclusion threshold ------
      0.047   14.2   0.1      0.094   13.3   0.1    1.6  1  AAA_18     AAA domain
       0.13   11.9   0.8          9    5.8   0.2    2.1  2  cobW       CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.9   0.1   7.2e-79   1.1e-75       1     174 [.       5     177 ..       5     178 .. 0.99

  Alignments for each domain:
  == domain 1  score: 252.9 bits;  conditional E-value: 7.2e-79
                 HHHHHHGGTT.TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHH CS
         Arf   1 llsilaklklkkkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRlee 99 
                 ++s++++l++++kelril+lGLD+aGKtTil++l+ +e+vtt+PTigfnve+l++knlk++vwD+GGq+++Rp+W++Y+++t avifvvDs+d++R+++
  CCD25073.1   5 FSSMFDRLWGVNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLTYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMAT 103
                 68999********************************************************************************************** PP

                 HHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 100 akeeLkalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                 a++eL+ +l+eeel+++allv+aNKqD p+als++e++++l+l elk +r+++i+++sa+kgeg++egl+wl+e 
  CCD25073.1 104 ASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSRELNLVELK-DRSWSIVASSAIKGEGITEGLDWLIEV 177
                 ***********************************************.************************986 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   1.3e-18   1.9e-15       1     119 [.      20     130 ..      20     131 .. 0.78

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 1.3e-18
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWl 99 
                 +++++G  g+GKt++l r++ +++  ++k+tig ++ t ++            k++kln+WD++Gq+ +r   ++y+ + a++i+v+ds++++++ +  
  CCD25073.1  20 RILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLTY------------KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMATAS 105
                 699*******************996.568******976543............4578*******************************88776665544 PP

                 HHHHHH.....CSSS-EEEEEE-TT CS
         Roc 100 kelkkv.....agkspvilvgnkiD 119
                 kel+ +      +++ +++ +nk D
  CCD25073.1 106 KELHLMlqeeeLQDAALLVFANKQD 130
                 4444331000134456677789998 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   2.1e-14   3.2e-11       3     137 ..      18     144 ..      16     178 .. 0.86

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 2.1e-14
                 --EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHH CS
       SRPRB   3 kpavllvGlsdsGKTslftrLttdsvkktvtSq.essaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAElly 100
                 + ++l++Gl  +GKT+++ rL  ++v +t   +  +  +l +   k+ kl++ D+ G+ ++r     +    +   +++fvvDSt +++ ++   El  
  CCD25073.1  18 ELRILILGLDGAGKTTILYRLQIGEVVTTKPTIgFNVETLTY---KNLKLNVWDLGGQTSIRPYWRCY---YADTAAVIFVVDSTDKDRMATASKELH- 109
                 5689*****************************889999999...9****************987666...667789********9999999999975. PP

                 HHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHH CS
       SRPRB 101 eilliteklkdavdiliACnKqelflakspklikdaL 137
                  ++l+ e+l +   +l+  nKq+   a s++ +  +L
  CCD25073.1 110 -LMLQEEEL-QDAALLVFANKQDQPGALSASEVSREL 144
                 .44444444.556788899****99998888877665 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   5.6e-14   8.4e-11       1     160 [.      20     178 ..      20     180 .. 0.82

  Alignments for each domain:
  == domain 1  score: 41.7 bits;  conditional E-value: 5.6e-14
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 +++++G  + GKt++l+r   ++  ++ ++Tig++  t  +    k++kl++wD  Gq   +   + yy d+ +++ v d t+++   +++k ++ + +
  CCD25073.1  20 RILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVET--L--TYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMATASKELHLMLQ 113
                 589********************8875.9***877654..3..45789****************************************99966555555 PP

                 HST.TTSEEEEEEETTTGGG...G-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras 100 vae.envpivLvGnKvDlee...kravsteegeelakelglkfletSAktnenveeafeellrei 160
                   e ++ ++++ +nK D        +vs+e      k+ +   +  SA + e+++e ++ l++ i
  CCD25073.1 114 EEElQDAALLVFANKQDQPGalsASEVSRELNLVELKDRSWSIVASSAIKGEGITEGLDWLIEVI 178
                 555599***********876555677777766666677778888888888888888877777665 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   8.8e-05      0.13      22      45 ..      17      40 ..      10      47 .. 0.88
   2 !   25.5   0.0   4.5e-09   6.7e-06     186     280 ..      47     130 ..      41     131 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 8.8e-05
                .EEEEEEEESTTSSHHHHHHHHHH CS
     G-alpha 22 revkllllGqseSGKsTilkqlkl 45
                +e+++l+lG ++ GK+Til  l++
  CCD25073.1 17 KELRILILGLDGAGKTTILYRLQI 40
                589****************99986 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 4.5e-09
                 ----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE-HH CS
     G-alpha 186 lktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnKlD 280
                  +t+G++  ++ ++ +l+++++d+gGq s r+ W  ++ d+ a+iF+v   +            r+  + k  + ++++++l+++ +++f nK D
  CCD25073.1  47 KPTIGFNVETLTYK-NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDK----------DRMATASKELHLMLQEEELQDAALLVFANKQD 130
                 46999999999998.********************************984433..........45555555556666666666666666666666 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   1.1e-12   1.6e-09       1     123 [.      20     131 ..      20     152 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 1.1e-12
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.leedletl 98 
                 ++L++G  g+GKt++       ++  ++++ + ti  + +++ +++nl+ln+wD+gGq+++   y+     + + + +++i+V+D+++++ + ++ ++l
  CCD25073.1  20 RILILGLDGAGKTTI----LYRLQIGEVVTTKPTIGFNVETL-TYKNLKLNVWDLGGQTSIR-PYW----RCYYADTAAVIFVVDSTDKDrMATASKEL 108
                 69***********85....567999*****************.89*************9865.553....6788999**********776466666666 PP

   Gtr1_RagA  99 keilealrqyspeakvfvlihKmDl 123
                 + +l++  +  ++a + v+ +K D+
  CCD25073.1 109 HLMLQE--EELQDAALLVFANKQDQ 131
                 655553..55678999999999996 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.2e-07   0.00019       1     113 [.      20     127 ..      20     157 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.2e-07
                 EEEEEESTTSSHHHHHHHH.HTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHH.HHCTSEEEEEEETT.TTCSHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinal.tgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkafla.leeadlillvvdas.eeklkpldee 96 
                 +++i+G   +GK+t++ +l +ge++ ++     T+  n +++++k+ +++++D+ G         +++  ++    ++ ++++vvd++ ++ ++   +e
  CCD25073.1  20 RILILGLDGAGKTTILYRLqIGEVVTTKP----TIGFNVETLTYKNLKLNVWDLGG-QT------SIRPYWRCyYADTAAVIFVVDSTdKDRMATASKE 107
                 689****************6666555544....555666666666889********.33......2333333312257899999996664467777788 PP

                 HHHHHHH...TTSEEEEEEE CS
    MMR_HSR1  97 leellee...akkplilvln 113
                 l+ +l+e   ++  l++ +n
  CCD25073.1 108 LHLMLQEeelQDAALLVFAN 127
                 87777665544444455555 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.14   2.1e+02       5      24 ..      20      39 ..      16      49 .. 0.80
   2 !   17.9   0.0   1.2e-06    0.0018      68     193 ..      60     179 ..      44     180 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.14
                EEEEEESTTSSHHHHHHHHH CS
    GTP_EFTU  5 nigiighvDhGKtTLtdrLl 24
                 i i+g   +GKtT++ rL 
  CCD25073.1 20 RILILGLDGAGKTTILYRLQ 39
                678888889******98885 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.2e-06
                 SSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB..STHHHHHHHHHHHHTTTE...EEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHH CS
    GTP_EFTU  68 kkylinliDtPGHvdFskevirglrvlDgavlvvdaveG..vepqteevlrlalkegvp...iivfiNKmDrl.kaelkeiveevkqklsrkeekleky 160
                 k+ ++n+ D  G  +        ++ +  +++vvd+++   + + ++e+  ++++e+++   + vf NK D++   + +e+ +e++  l         +
  CCD25073.1  60 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKdrMATASKELHLMLQEEELQdaaLLVFANKQDQPgALSASEVSRELN--L---------V 147
                 55555555555555555555555666778999**9986643555566666667777777888***********5455555555555..3.........2 PP

                 HHTTTTTEEEEEEBTTTTBTHHHHHHHHHHHSH CS
    GTP_EFTU 161 gekgekevpvvfgSalkgegvktllealvellp 193
                 + k+ +  ++v  Sa+kgeg+++ l+ l+e ++
  CCD25073.1 148 ELKD-RSWSIVASSAIKGEGITEGLDWLIEVIK 179
                 3333.4799**************9999998775 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   2.4e-06    0.0036       7     101 ..      14     153 ..      11     165 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.4e-06
                 EEETTSEEEEEESTTSSHHHHH.HHHTTSS--SEEEE.........................................EETTCEGGGB-HHHCCHCEEE CS
                 xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx.........................................xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKStLl.kllagllkpteGei.........................................lldgkdlkeqeleslrkeigv 63 
                  +++  ++ i+G  GaGK+t+l +l +g++  t+ +i                                          +d++d   +++  ++ke+  
  CCD25073.1  14 GVNKELRILILGLDGAGKTTILyRLQIGEVVTTKPTIgfnvetltyknlklnvwdlggqtsirpywrcyyadtaavifVVDSTDK--DRMATASKELHL 110
                 57788899************98345589999999999777777777777777777777666666666666666665333333332..447777777777 PP

                 E-SS--S-TTSB.HHHHHHHTC....HHHHHHHSTTGGTTCBG CS
                 xxxxxxxxxxxx.xxxxxxxxx....xxxxxxxxxxxxxxxxx RF
    ABC_tran  64 lpqepqlfpelt.vrenesdee....iekalsklglkelkdtv 101
                 + qe++l++    v  n++d+     ++++ ++l+l+elkd+ 
  CCD25073.1 111 MLQEEELQDAALlVFANKQDQPgalsASEVSRELNLVELKDRS 153
                 7777777777665666655554666677777777777766665 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.051        77      30      50 ..      19      39 ..      10      47 .. 0.85
   2 !   10.7   0.2   0.00013      0.19     169     224 ..     121     173 ..      86     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.051
                EEEEEEE-TTSSHHHHHHHHH CS
        MeaB 30 qvvGltGvPGaGkstlvealg 50
                 ++ + G+ GaGk t++ +l 
  CCD25073.1 19 LRILILGLDGAGKTTILYRLQ 39
                678899**********99886 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00013
                 -SEEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCCCTBSHHHHHHH CS
        MeaB 169 aDiivvnkaDkkeaekaarelraaleleeekekeWrpkvlktsavegeGidelvda 224
                 a ++  nk+D+++a  a  e++  l+l e k+++W+  ++  sa +geGi e +d 
  CCD25073.1 121 ALLVFANKQDQPGALSA-SEVSRELNLVELKDRSWS--IVASSAIKGEGITEGLDW 173
                 44667899999998765.56777899999999***6..8999******99885554 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   6.3e-05     0.094       1      62 [.      21      94 ..      21     116 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.3e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrlgf...............gvnlrdvakenglllevdpealdeskrldedkldklld 62
                Il+ G  G+GKtt+  +L+   ++                 nl+ ++++ g  ++  p+   ++  +d+  +  ++d
  CCD25073.1 21 ILILGLDGAGKTTILYRLQIG-EVvttkptigfnvetltYKNLKLNVWDLGGQTSIRPY--WRCYYADTAAVIFVVD 94
                99****************544.2345555664466666666666666666666666666..6666666666555555 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.006         9       3      20 ..      21      38 ..      19      47 .. 0.86
   2 ?    4.7   0.0     0.014        21     112     158 ..      86     137 ..      77     152 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.006
                EEEEESTTCCHHHHHHHH CS
        cobW  3 tvltGflGsGKTtLlnhl 20
                +++ G  G+GKTt+l +l
  CCD25073.1 21 ILILGLDGAGKTTILYRL 38
                5688999*******9876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.014
                 ECEEEEEEETTTH.....CCHCCHHHHHHHHHHTSSEEEE.E-HHHHCHC.. CS
        cobW 112 ldavvavvDaknl....eaeeekieekaedqlaaadllvl.nKtDlldeeal 158
                   av++vvD++      +a++e    + e++l+ a llv+ nK D+  +   
  CCD25073.1  86 TAAVIFVVDSTDKdrmaTASKELHLMLQEEELQDAALLVFaNKQDQPGALSA 137
                 56899****977777755555555566778888877776449*999877743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1377.77
//
Query:       CCD25074.1  [L=161]
Description: hypothetical protein NDAI_0E02570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.11   12.3   0.3       0.23   11.3   0.3    1.5  1  Soyouz_module  N-terminal region of Paramyxovirinae phosphopr


Domain annotation for each model (and alignments):
>> Soyouz_module  N-terminal region of Paramyxovirinae phosphoprotein (P)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   1.3e-05      0.23      29      48 ..      30      49 ..      24      55 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 1.3e-05
  Soyouz_module 29 kpqkTlGkSaIpkGkTkalt 48
                     +k++GkS ++kG+T++  
     CCD25074.1 30 LVKKSTGKSRVRKGQTEEQY 49
                   5689************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       963  (0.0537119); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1289.41
//
Query:       CCD25075.1  [L=253]
Description: hypothetical protein NDAI_0E02580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-24   85.8   3.5    2.2e-24   84.8   3.5    1.6  1  Oxidored-like  Oxidoreductase-like protein, N-terminal


Domain annotation for each model (and alignments):
>> Oxidored-like  Oxidoreductase-like protein, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   3.5   1.2e-28   2.2e-24       2      45 ..      84     127 ..      83     128 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 1.2e-28
  Oxidored-like   2 iaGvlvPpkPeePdnCCmSGCvnCVwdlYredleewkealkear 45 
                    iaGv+vP+kP +PdnCCmSGCvnCVw++Y+ed+++wk++++ea+
     CCD25075.1  84 IAGVKVPEKPIAPDNCCMSGCVNCVWEIYNEDIRYWKKKRREAA 127
                    8****************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1087  (0.060628); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1928.66
//
Query:       CCD25076.1  [L=685]
Description: hypothetical protein NDAI_0E02590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.9e-188  625.2   2.9   1.7e-187  624.3   2.9    1.5  1  HSP70            Hsp70 protein
    5.1e-11   42.0   0.1    2.3e-10   39.8   0.0    1.8  2  MreB_Mbl         MreB/Mbl protein
    0.00088   19.7   0.1      0.022   15.2   0.0    2.8  2  FtsA             Cell division protein FtsA
  ------ inclusion threshold ------
      0.049   14.2   0.0       0.21   12.1   0.0    2.1  1  NLE              NLE (NUC135) domain
      0.074   13.1   0.0       0.31   11.0   0.0    2.0  2  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
      0.086   12.9   0.0       0.32   11.1   0.0    1.9  1  Trans_reg_C      Transcriptional regulatory protein, C termin
        2.3    8.0   5.7       0.48   10.2   0.1    2.6  3  Endonuc_Holl     Endonuclease related to archaeal Holliday ju


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  624.3   2.9  6.8e-191  1.7e-187       2     597 ..       5     642 ..       4     644 .. 0.98

  Alignments for each domain:
  == domain 1  score: 624.3 bits;  conditional E-value: 6.8e-191
                 EEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEEE CS
       HSP70   2 iGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavve 100
                 +G+DLG++nsv+av+++++i+v++ne +nr+tPs+v+F++k+r++Ge++k++ ++n+kntv ++Kr++G ++++p++  e++ +++k+vk++++k+++e
  CCD25076.1   5 FGLDLGNNNSVLAVARNRGIDVVVNEVSNRATPSLVGFGPKNRYLGETGKTKETSNVKNTVGNLKRIVGLDYAHPDFSTESEYFTSKLVKTDDEKIGAE 103
                 7************************************************************************************************** PP

                 EEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS......SCEEEEEE CS
       HSP70 101 veaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd......kernvlvy 191
                 v+ age  +f+++q++am++ k+k+t+++ ++++++d++++vPa+++++qR+ ++dA+++AGLn +RivN++TAaa++YG+ k+d      k+r+v+++
  CCD25076.1 104 VRLAGEkhTFNATQLAAMFIGKVKNTVQQETKANINDVCVAVPAWYTEEQRYTIADAARVAGLNPVRIVNDVTAAAVSYGVFKTDlpegeeKPRIVAFV 202
                 *****999******************************************************************************************* PP

                 EEXSSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEE CS
       HSP70 192 DlGggtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdls 290
                 D+G++t+++Si++++kG ++v++Ta+D+h+GG++fD+a++eh+++efk k++id+++++ka++r+++a ek+Kk LS+  +t +++++e+v++ ++d+s
  CCD25076.1 203 DIGHSTYTCSIMAFKKGELKVLGTAYDKHFGGRNFDRAITEHFADEFKGKYKIDIRENPKAYNRVLTASEKLKKVLSA--NTAAPFNLESVMN-DVDVS 298
                 ******************************************************************************..9************.***** PP

                 EEEEHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTTCHHBSSSHTTTHHHHHHHHHHHHHCTCGCSHCCEEEEB CS
       HSP70 291 eklsRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfgkepsktvnpDeavaiGAAvqagvlsgeeevkdllllDv 389
                 ++l+R+++eelv++ller++epv++al++akl+ e++d v+++GG+tRiP+++++++e+fgk++s+t+n+Dea+a+GAA++++++s++ +v++++++D+
  CCD25076.1 299 SQLTRDELEELVKPLLERVTEPVTNALAQAKLTPEDVDFVEIIGGTTRIPTLKNSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDI 397
                 *************************************************************************************************** PP

                 ESS-EEEEETTTEEEEEESTTCBSSEEEE.EEEEESSTTSS.SEEEEEEESSSSBGGGS..EEEEEEEEECESSCSTTCSEEEE..EEEEETTSCEEEE CS
       HSP70 390 tpLslgietlggvmtkliernttiptkks.qvfstaadnqt.aveievlqgerelvkdn..kllgsfeldgippaprGvpqieV..tfdidanGiltvs 482
                 +p  ++++++++++ + +++++++++ ++ ++++++++n+t ++++++ +++ +++++     ++++e++g++  p+G++++ V   +++d++G++ ++
  CCD25076.1 398 HP--FSVSYSWDKQVEEEDHMEVFAAGSTfPSTKLITLNRTgDFTMAAQYTNIDQLPKGtgADIAKWEITGVE-VPEGEESVPVkvVLRCDPSGLHIIE 493
                 **..99**************************************************9987899*********9.999*9887662268*********** PP

                 EEETTTCCEEEEEEECCSSSBHHHHHH.............................HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.GGG CS
       HSP70 483 akdketgkeeeitieaseglseeeiek.............................mvkdaeesaeedkkkkeaieakneaeelvyslekkleee.aek 551
                 ++++ ++++ ++ +    +++e+++ +                             ++++++++ ++dk  +e+ ++kn++ee++y+l++kl+ee a +
  CCD25076.1 494 EAYTVHDIKVQEVVPLPADAPEDAEPEfrevtktvkkdsltvvahtfalddktlneLIEKENAMFAKDKLVAETEDRKNTLEEYIYTLRGKLDEEyAPF 592
                 *******************9999999899*****************************************************************99999 PP

                 STHHHH....HHHHHHHHHHHCHTTSSCHHHHHHHHHHHHHHHHHHHHHH CS
       HSP70 552 vseaek....ekvesaieeLkeeleeeekeeieakteelkkvvekiaekl 597
                 +s aek    +++ +a+e+L++e+ ++ k+++ ak+eel+++++ i+ ++
  CCD25076.1 593 ASGAEKtklkDMLAKAEEWLYDEGYDSIKAKYIAKYEELASLGNMIRGRY 642
                 9999997787889999*************************999998776 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.23   5.9e+02       3      29 ..       4      33 ..       2      54 .. 0.76
   2 !   39.8   0.0   8.8e-14   2.3e-10      74     317 ..     119     378 ..     111     384 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.23
                EEEEEE-SSEEEE.EETTTEE..EEEEES- CS
    MreB_Mbl  3 dlgiDLGtantlv.yvkgkgi..vlnepsv 29
                 +g+DLG  n +   ++++gi  v+ne s 
  CCD25076.1  4 PFGLDLGNNNSVLaVARNRGIdvVVNEVSN 33
                5799***99976625567775448888775 PP

  == domain 2  score: 39.8 bits;  conditional E-value: 8.8e-14
                 HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT.....--TTSSS-EEE..EEE-SS-EEEEEEETT CS
    MreB_Mbl  74 aeellkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGag.....lpveepsgnmv..vdiGggttevavislg 165
                 a+ ++ ++ + v+++++ + + v ++vP   te +r  + +aa+ aG + v +++++ aAA+  g     lp  e +  +v  vdiG  t  ++++++ 
  CCD25076.1 119 AAMFIGKVKNTVQQETKANINDVCVAVPAWYTEEQRYTIADAARVAGLNPVRIVNDVTAAAVSYGvfktdLPEGEEKPRIVafVDIGHSTYTCSIMAFK 217
                 4455556666677788888999****************************************8652111155555555565559***********9864 PP

                 E.....EEEEEEES-SHHHHHHHHHHHH....HHHHSEE--HHHHHHHHHHH-BSS--HHHH.....EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHH CS
    MreB_Mbl 166 g.....ivtsksvrvaGdeldeaiikyi....rkkynlliGertaekikieigsavkeeeee.....kmeikGrdlvtglpkevevsseevrealkepv 250
                       + t+   + +G ++d ai+++     + ky++ i e+       ++ +a ++ ++          +   +++ +  + +++ +e++e +k  +
  CCD25076.1 218 KgelkvLGTAYDKHFGGRNFDRAITEHFadefKGKYKIDIRENPK--AYNRVLTASEKLKKVlsantAAPFNLESVMNDVDVSSQLTRDELEELVKPLL 314
                 322221445666789***********9722224455566655443..3333333333322222122234445566777777778888888888888888 PP

                 HHHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHH CS
    MreB_Mbl 251 saiveavkevLektppeLaadivdrgivltGGgallkgldkllseetglpvkvaedpltcvakGtgk 317
                 ++++e v+++L ++   L+ + vd  + + GG++ +  l++ +se++g p +++ +  +++akG++ 
  CCD25076.1 315 ERVTEPVTNALAQA--KLTPEDVD-FVEIIGGTTRIPTLKNSISEAFGKPLSTTLNQDEAIAKGAAF 378
                 88999999999765..45554444.45678**********************************975 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.22   5.6e+02       2      20 ..       6      24 ..       5      44 .. 0.85
   2 !   15.2   0.0   8.6e-06     0.022       1      90 [.     200     369 ..     200     382 .. 0.65

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.22
                EEEE-SSSEEEEEEETTEE CS
                xxxxxxxxxxxxxxxxxxx RF
        FtsA  2 lvDiGagktdvavaedgal 20
                ++D+G++ + +ava++ ++
  CCD25076.1  6 GLDLGNNNSVLAVARNRGI 24
                79*************9654 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 8.6e-06
                 EEEEE-SSSEEEEEEETTEEEEEEEES-......-HHHHHHH...................HHHHHT--HHHHHHHHHHH--S--.............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxx.............. RF
        FtsA   1 alvDiGagktdvavaedgalvhlrvigv......ggngitkd...................iakalrtaveeAerikikyGsala.............. 60 
                 a vDiG+++ +++++  +    l+v+g+      gg+++++                      ka++  + + e++k       +              
  CCD25076.1 200 AFVDIGHSTYTCSIMAFK-KGELKVLGTaydkhfGGRNFDRAitehfadefkgkykidireNPKAYNRVLTASEKLK-------Kvlsantaapfnles 290
                 579***********9994.33499999999999*********44444444444433333333333344444444444.......033344456666655 PP

                 .......EEEEEHHHHH...........................................GGGGSTTHHHHHHHHH.T-........ CS
                 .......xxxxxxxxxx...........................................xxxxxxxxxxxxxxxx.xxx......x RF
        FtsA  61 .......ekeigrkels...........................................ggsalpnleelaeral.spk......l 90 
                        +        s                                           g++ +p l++ +++a+ +p       +
  CCD25076.1 291 vmndvdvS--------SqltrdeleelvkpllervtepvtnalaqakltpedvdfveiigGTTRIPTLKNSISEAFgKPLsttlnqD 369
                 55544443........044455555888899999999999999999999999999999999************99864432223322 PP

>> NLE  NLE (NUC135) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.2e-05      0.21      19      42 ..     293     318 ..     284     347 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.2e-05
         NLE  19 tplsvPasltrkqLselvnkLlk..e 42 
                 + ++v + ltr++L+elv+ Ll+   
  CCD25076.1 293 NDVDVSSQLTRDELEELVKPLLErvT 318
                 6789******************9642 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.4   6.1e+03      16      44 ..     143     171 ..     132     180 .. 0.77
   2 ?   11.0   0.0   0.00012      0.31      17      54 ..     308     345 ..     295     349 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.4
                      SSSTSTTHHHHHHHHHHHHHHHT--GGGE CS
  Ketoacyl-synt_C  16 nsltapngeaqaraiekalaeagvdpedv 44 
                        ++a   e+q+  i++a + ag++p ++
       CCD25076.1 143 VAVPAWYTEEQRYTIADAARVAGLNPVRI 171
                      55677778899999999999999998765 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00012
                      SSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SS CS
  Ketoacyl-synt_C  17 sltapngeaqaraiekalaeagvdpedvdyveahgtgt 54 
                       l +p  e   + +++ala+a+++pedvd ve  g  t
       CCD25076.1 308 ELVKPLLERVTEPVTNALAQAKLTPEDVDFVEIIGGTT 345
                      56677778888889******************988766 PP

>> Trans_reg_C  Transcriptional regulatory protein, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00012      0.32      14      59 ..     547     587 ..     544     594 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00012
                  HHHHHHTTTSEEEHHHHHHHHTTTTSTSHTHHHHHHHHHHHHHHHT CS
  Trans_reg_C  14 LelLlenpgrvvsreeLleevwgededvddrtvdvhisrLRkkLed 59 
                  L  L+e+++ ++ +++L+ e  ++      +t++ +i++LR kL++
   CCD25076.1 547 LNELIEKENAMFAKDKLVAETEDR-----KNTLEEYIYTLRGKLDE 587
                  667888899999999998887654.....57*************99 PP

>> Endonuc_Holl  Endonuclease related to archaeal Holliday junction resolvase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.87   2.2e+03      71     105 ..     304     338 ..     269     340 .. 0.80
   2 ?   10.2   0.1   0.00019      0.48      44      93 ..     545     594 ..     512     605 .. 0.75
   3 ?   -2.3   1.3       1.3   3.4e+03      21      53 ..     647     679 ..     631     685 .] 0.47

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.87
  Endonuc_Holl  71 daikksksvilgkvtEeliPlfpefsynpkDaRfl 105
                   d ++   + +l +vtE ++  + + ++ p D+ f+
    CCD25076.1 304 DELEELVKPLLERVTEPVTNALAQAKLTPEDVDFV 338
                   55555566678899999999999999999999886 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00019
  Endonuc_Holl  44 eaeallkkeaevkleewkkkeekeiRedaikksksvilgkvtEeliPlfp 93 
                   ++ ++l ++++++++++k   e e R+++++  + +++gk+ Ee +P+ +
    CCD25076.1 545 KTLNELIEKENAMFAKDKLVAETEDRKNTLEEYIYTLRGKLDEEYAPFAS 594
                   334556688999***********************************974 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.3
  Endonuc_Holl  21 ekkarelfeewkkeeaeeleklkeaeallkkea 53 
                   e+k+++l  + +++++++l+ +  a+++++ ea
    CCD25076.1 647 EEKKQALRANKEASQMADLSAKLAAQRKAEAEA 679
                   344444444444444444444433333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5011.91
//
Query:       CCD25077.1  [L=862]
Description: hypothetical protein NDAI_0E02600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-14   52.3   0.3      9e-14   50.9   0.3    1.8  1  GYF        GYF domain
     0.0049   16.6   0.1      0.014   15.2   0.1    1.9  1  GYF_2      GYF domain 2


Domain annotation for each model (and alignments):
>> GYF  GYF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.3     1e-17     9e-14       1      39 [.     226     264 ..     226     272 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.9 bits;  conditional E-value: 1e-17
         GYF   1 WeYkdpqgevqGPFsseeMqkWykagYFkdgllvrrved 39 
                 W Y+d +g+ qGPF s+ M++W++agYF+++l++ rv++
  CCD25077.1 226 WRYIDIHGQQQGPFPSTSMSQWLQAGYFQPSLQIQRVNT 264
                 ************************************976 PP

>> GYF_2  GYF domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.6e-06     0.014       2      30 ..     228     256 ..     226     261 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.6e-06
       GYF_2   2 yyadngqqqGPfsleeLkelaasgeitpd 30 
                 y+ + gqqqGPf    + +++++g+ +p+
  CCD25077.1 228 YIDIHGQQQGPFPSTSMSQWLQAGYFQPS 256
                 6677********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (862 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3631  (0.202521); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                       242  (0.0134977); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.54u 0.38s 00:00:01.92 Elapsed: 00:00:00.51
# Mc/sec: 5120.09
//
Query:       CCD25078.1  [L=662]
Description: hypothetical protein NDAI_0E02610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.7e-101  338.3   0.1   5.1e-101  337.9   0.1    1.1  1  tRNA-synt_2      tRNA synthetases class II (D, K and N)
    1.3e-08   34.7   0.0    2.9e-08   33.6   0.0    1.6  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.012   15.1   0.0       0.11   12.0   0.0    2.1  2  tRNA-synt_2d     tRNA synthetases class II core domain (F)


Domain annotation for each model (and alignments):
>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.9   0.1  8.6e-105  5.1e-101       6     312 ..     160     632 ..     156     634 .. 0.96

  Alignments for each domain:
  == domain 1  score: 337.9 bits;  conditional E-value: 8.6e-105
                  HHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTT-EE----SEESS--SSSS--EEEEETTT.T.....EEE-E-S-SHHHHHHHHHCTHSEEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2   6 lknryldlrtekvskvlrlrstvtkavrkyleengfieietPiLsksdteegarlFkvksrekek.....effaLtqspqlylellivagidrvfqia 98 
                   ++ryl+lr++k+s+ l+ r ++ ++vr++l++++f+eietPiL+k  t+egar+F+v++r+k+      +f+ Ltqspq+y++ll+++g++++fq+a
   CCD25078.1 160 PQYRYLQLRNPKYSDFLKKRYEISRIVRDILNKENFLEIETPILFKP-TPEGAREFLVPTRVKKAkkgipTFYSLTQSPQQYKQLLMASGFSNYFQVA 256
                  69*********************************************.**************94446899**************************** PP

                  EEE--S--BTTB-S-CEEEEEEEEET-SCHHHHHHHHHHHHHHHHHHHHCSCCCCCHTTTTTS....EE-SSS-EEEEHHHHHHHHHTS-SS--HHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  99 raFRaEdsrtdrhlaEFtqieaemsfieeedimqvleelikslvkevlessakdiefvirrns....kdlkkpfkrltykeaieklneigkdldkade 192
                  r+FR+Ed+r+dr++ EFtqi++emsf++ +d+mq+le+l+ ++++e+  +  +  + +++ ++    ++ ++++ rlty++a++      +++dk+d+
   CCD25078.1 257 RCFRDEDLRADRQP-EFTQIDLEMSFASGNDVMQLLEQLVPKTWDELSITG-ELFTLDHSGKKlipvHENRNEIYRLTYQQAMSL-----YGIDKPDL 347
                  **************.********************************4443.555555555557898888888************.....******** PP

                  HHHHH............................................................................................. CS
                  xxxxx............................................................................................. RF
  tRNA-synt_2 193 ralvk............................................................................................. 197
                  ra                                                                                                
   CCD25078.1 348 RAPDLkivdlsefratanrnkkfptfevivlrnafdsienykenwhfldnaqnytyrtplvvpitndeakttwfekfqsiaafenpkmiskflnlkqg 445
                  **977799****************************************************************************************** PP

                  ........................................HS--SEEEEEEEB........................GGGSTTCBBBSTTS....... CS
                  ........................................xxxxxxxxxxxxx........................xxxxxxxxxxxxxx....... RF
  tRNA-synt_2 198 ........................................keknepvfvtdfP........................aelkpFyarkeedd....... 224
                                                          +++ +  +v+dfP                        ++++pF++ + +d+       
   CCD25078.1 446 diicgstrepngsifenptplgtlrklvlqseigkrlyreTDHDVASWVIDFPlfspltnepapnddfpiyqhdrlmSTHHPFTMVNLSDYnklnknp 543
                  ***************************************999999***************************************************** PP

                  .TTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHCCHHSSSGGGGHHHHHHHHCT--SEEEEEEEHHHHHHHHCT-SSGGGCSSS-X CS
                  .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 225 .kkltesyDllingvElvgGslRiedpeeleeklkskgldeeaeekfswylealeyGapphgGlglGldRlvmlllgsesIrdviaFPk 312
                   k++ ++yDl+ing+El+gGs+R++dpe+++ +++s  + e+ ee f+++l+a+ +G+pph+G+++G+dR++++l+g+esIrdv+aFPk
   CCD25078.1 544 tKCRGQHYDLVINGIELGGGSTRVHDPELQNFIFESILKIENSEELFGHLLNAFAMGTPPHAGFAIGFDRMCAMLCGTESIRDVLAFPK 632
                  *************************************9999***********************************************9 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   4.8e-12   2.9e-08       1      76 []      60     139 ..      60     139 .. 0.92

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 4.8e-12
                      EEEEEEEEEEEEEEETTEEEEEEEETT.EEEEEEEETHHHHHHHTTS-TTSEEEEEEEEEECTTS.......SEEEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgt.griqvvlfreeatklaenlkeGdvvrvtGrvkrrpgg.......elelkveeiell 76 
                      V++ G++ ++ +  g++++f +lrD   ++iq+v       +l++ + +++vv+v+G++++ ++        e+elk +e+++l
       CCD25078.1  60 VSINGWIDNKPKHIGKNISFGVLRDPNgDTIQLVDSH----SLLKGISRETVVQVKGTISSKKNSnlysnrlEYELKLNELSVL 139
                      89********988888889999*****7799999888....*********************888899999*********9876 PP

>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.8e-05      0.11      88     129 ..     236     277 ..     200     300 .. 0.86
   2 ?    0.3   0.0     0.066     4e+02     212     235 ..     605     628 ..     595     632 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.8e-05
                   HHHHHHHHTTS-SSEEEEEEEEEEBSST-SSSB-SEEEEEEE CS
  tRNA-synt_2d  88 tavqirtlekkkppikiisigrvfRrdavDathlaeFhqveg 129
                   ++ q ++l   +    ++ + r+fR +++ a +++eF+q++ 
    CCD25078.1 236 SPQQYKQLLMASGFSNYFQVARCFRDEDLRADRQPEFTQIDL 277
                   7788888888888899***********************985 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.066
                   EEEEEEHHHHHHHHHT-SSGHHHH CS
  tRNA-synt_2d 212 fafGlGveRlamlkygieDiRelv 235
                   ++f +G++R+  + +g e iR+++
    CCD25078.1 605 AGFAIGFDRMCAMLCGTESIRDVL 628
                   4688999**************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5006.16
//
Query:       CCD25079.1  [L=474]
Description: hypothetical protein NDAI_0E02620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-27   95.7   0.0    4.1e-27   95.0   0.0    1.2  1  Lactamase_B_2  Beta-lactamase superfamily domain
    4.7e-12   46.1   0.0    8.5e-12   45.3   0.0    1.5  1  Lactamase_B_3  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.0   0.0   4.5e-31   4.1e-27       3     201 .]     232     432 ..     231     432 .. 0.89

  Alignments for each domain:
  == domain 1  score: 95.0 bits;  conditional E-value: 4.5e-31
                    EEES--TT......HHHHHTCGG.S--SSS--..SEEEEE-SS--HHHHGGGGCCCCC--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE- CS
  Lactamase_B_2   3 iLiDagpd......lrqqalral.qPvelrdelppidaVllthaHyDHlaglltlrelrpkklplyapkgvlavleanfvylaleeepavnvheld 91 
                    iL+D+ ++       +++ +r   +P+e  +++p  d +l++h+H DHl +  +l          + ++ +l ++ +++++++++++   nv e+ 
     CCD25079.1 232 ILTDPIFSdfliheKLGP-KRITfRPCE-ISDVPTPDIILVSHNHPDHL-DPKSLE--------YWKDANTLWIIPKGMKPFMDKHK-VQNVIEIS 315
                    99*****99986654455.777778887.8999****************.644444........57789999999999999988888.9******* PP

                    TTSEEEE..CSTTEEEEEEEE-EE--C.TCCE-TTTSEEEEEE.CTTEEEEEESS-S---...HHHHHHHCT.-SEEEEE-S-SSTTHHHHHHT-- CS
  Lactamase_B_2  92 wgesfel..gdggleitatparhksgr.rldrnagdtlGlrie.gggkrvyyigDtgyip...eeigerlgg.adllllditayeddemirhmgHl 179
                    w++s++l  ++++  i  tpa h+sgr  ld+n+++++++++  +g+  ++++gDtgy++   ++i++r+gg ++l+ll+++ y +++ + ++ H+
     CCD25079.1 316 WWQSVQLtkNNENYFISSTPAMHWSGRsILDTNQSLWCSFLLShKGKPILFHAGDTGYVKdlyQRIKNRFGGgCKLALLPCGQYCPEWHQ-KPRHI 410
                    *******99667889****************************5666669**********7877899***989***************87.8**** PP

                    -STSHHHHCTTSSSSEEEEESB CS
  Lactamase_B_2 180 tpeeaveaaadlgakrlvliHi 201
                    + +e +++++dl++k ++ +H+
     CCD25079.1 411 NSKEVIDIMQDLEIKNVLGVHW 432
                    *********************9 PP

>> Lactamase_B_3  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   9.5e-16   8.5e-12       3     162 ..     216     430 ..     214     431 .. 0.71

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 9.5e-16
  Lactamase_B_3   3 twlghnsflletagarilvDPf......kanlgyeppa.................eeaDlvlisqaledHahletlkql................. 58 
                    twlg+++   + +g +il+DP+      +        +                 +++D++l+s++++dH +++ l+                   
     CCD25079.1 216 TWLGQSCNFTTYNGLKILTDPIfsdfliH--------EklgpkritfrpceisdvPTPDIILVSHNHPDHLDPKSLEYWkdantlwiipkgmkpfm 303
                    8*********************4443331........2234445778889999************************9999889988888888877 PP

  Lactamase_B_3  59 ....aenvkvleegeslev....ggleiravatshdav...ggsergenngflleq.dgltiyhlGhlahelsseel...kelgrvDvvltPvgg. 138
                         +nv  ++ ++s+++    ++  i+++++ h+++    ++++   + fll+  ++  ++h G++++  +  +       g   + l+P g  
     CCD25079.1 304 dkhkVQNVIEISWWQSVQLtknnENYFISSTPAMHWSGrsiLDTNQSLWCSFLLSHkGKPILFHAGDTGYVKDLYQRiknRFGGGCKLALLPCGQy 399
                    754444444444488866544335899999999997662113445555788999885577789****99965544432223345677777777777 PP

  Lactamase_B_3 139 .......pltlgqeealelakrLkpklvlPm 162
                           p  ++ +e++++++ L+ k vl +
     CCD25079.1 400 cpewhqkPRHINSKEVIDIMQDLEIKNVLGV 430
                    7777777667777777777777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       421  (0.0234815); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3652.80
//
Query:       CCD25080.1  [L=469]
Description: hypothetical protein NDAI_0E02630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-05   23.1   0.0      0.024   15.5   0.0    3.4  3  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.75   1.3e+04      19      34 ..      83      96 ..      77      98 .. 0.61
   2 !   15.5   0.0   1.3e-06     0.024       9      34 ..     268     294 ..     261     298 .. 0.86
   3 !    3.5   0.0    0.0083   1.5e+02      20      37 ..     436     451 ..     416     452 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.75
                ETTSSEEEEEETTSEE CS
        WD40 19 spdgawlasGsdDgtv 34
                s +++ l +++ D +v
  CCD25080.1 83 SNNNNNL-TSM-DDSV 96
                6677776.577.5444 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 1.3e-06
                 SS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtv 34 
                  H +++ +la + dg+++a+Gsd+gt+
  CCD25080.1 268 VHkGNIACLAINYDGKLIATGSDKGTI 294
                 58555*****************99997 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.0083
                 TTSSEEEEEETTSEEEEE CS
        WD40  20 pdgawlasGsdDgtvriW 37 
                 p++ ++  +sdDgt +++
  CCD25080.1 436 PNQVYV--ASDDGTFKVY 451
                 566665..566*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3735.16
//
Query:       CCD25081.1  [L=198]
Description: hypothetical protein NDAI_0E02640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1381  (0.077026); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1489.82
//
Query:       CCD25082.1  [L=368]
Description: hypothetical protein NDAI_0E02650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-11   43.8   2.4    2.4e-11   43.5   1.0    2.0  2  Rad4            Rad4 transglutaminase-like domain
    4.9e-10   39.9   0.1    9.8e-10   38.9   0.1    1.5  1  Transglut_core  Transglutaminase-like superfamily
  ------ inclusion threshold ------
       0.41   10.7   4.4       0.42   10.6   2.5    1.9  2  zinc-ribbons_6  zinc-ribbons
        6.9    7.0  10.9       0.18   12.0   1.4    3.1  4  IBR             IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> Rad4  Rad4 transglutaminase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.4   6.4e+03      94     105 ..      68      79 ..      64      97 .. 0.73
   2 !   43.5   1.0   5.5e-15   2.4e-11      35      99 ..     218     277 ..     215     338 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.4
                 HHHH-T.TCCCC CS
        Rad4  94 TrRYlsdysnsk 105
                 + RY++ y n+ 
  CCD25082.1  68 SERYCTVYENGE 79 
                 789998766655 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 5.5e-15
                 S-SEEEEEEETTTTEEEEEESSSS-EESS--TTS--..TGGGS----EEEEE-TTS-EEE-HHHH-T CS
        Rad4  35 ypvyWvEvfspekkkwisvdplvgstiekkeilepl..aekakqvlsYVvAfdsdgsakDVTrRYls 99 
                 + ++W+E++sp  k+w++vd +       ++ +ep   + + ++ +sY +Af ++ ++ DV++RY+ 
  CCD25082.1 218 EDHVWCEYYSPFLKRWVHVDSCE------QSFDEPFiySVNWNKKMSYCIAF-NKDGMTDVSKRYIL 277
                 5689******************6......5888888888899999*******.9999********97 PP

>> Transglut_core  Transglutaminase-like superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.1   2.2e-13   9.8e-10      25     111 ..     164     237 ..     145     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 2.2e-13
  Transglut_core  25 vrknveysaprrtpgsrdaeavletgkGncedfaslfvallRalGipaRvvtgylsgeeekeqsvasedaHawvevylegyg.WvplD 111
                     v k  e+++  r p+++d+ ++let+ G+c ++ +lf+++lR+ G++aR++ +  +              H+w e+y +  + Wv++D
      CCD25082.1 164 VFKCSECNELARFPRYNDPIKLLETRTGRCGEWCNLFTLILRSFGLEARYIWNKED--------------HVWCEYYSPFLKrWVHVD 237
                     55566666778999*************************************77665..............*******965544****9 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.5   9.4e-05      0.42      16      58 ..     130     173 ..     116     176 .. 0.90
   2 ?   -2.5   0.0       1.2   5.4e+03      16      38 ..     220     242 ..     213     245 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 9.4e-05
                     EEE-TTT--EEEEEEE-SSS-S---EEEETTEEEE-.-TTTT-- CS
  zinc-ribbons_6  16 qyhCeaCqedlkkealCpeCeqelevlkaCgavdyf.CnkcneL 58 
                     + +C++C+++ k+     +   + e l  Cgav+ f C++cneL
      CCD25082.1 130 KPKCRKCHDSSKQIFDSIQGATREESLYGCGAVEVFkCSECNEL 173
                     568***********9999***************9666******9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
                     EEE-TTT--EEEEEEE-SSS-S- CS
  zinc-ribbons_6  16 qyhCeaCqedlkkealCpeCeqe 38 
                     ++ Ce  +  lk+  + + Ceq+
      CCD25082.1 220 HVWCEYYSPFLKRWVHVDSCEQS 242
                     55566555556666666666665 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       2.4   1.1e+04       2      15 ..      33      47 ..      32      50 .. 0.71
   2 ?   12.0   1.4   4.1e-05      0.18      14      46 ..     121     172 ..     107     174 .. 0.76
   3 ?   -1.5   0.1      0.68     3e+03      12      22 ..     214     224 ..     203     243 .. 0.62
   4 ?   -0.6   0.1      0.35   1.6e+03      11      22 ..     250     261 ..     239     274 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.4
         IBR  2 kyeklklkks.lesd 15
                +y++++ kk+ l+sd
  CCD25082.1 33 RYKDFIIKKFqLNSD 47
                899999999745555 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.1e-05
         IBR  14 sdpnlkwCprpdCeaiiekseg...cks.................vtCskCgf 46 
                 ++  ++wC +p+C +   +s++   +                    +Cs+C++
  CCD25082.1 121 KNDFFTWCDKPKCRKCHDSSKQifdS-IqgatreeslygcgavevFKCSECNE 172
                 35569*********998888887541.15667889999999999888****96 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.68
         IBR  12 lesdpnlkwCp 22 
                 + ++++ +wC 
  CCD25082.1 214 IWNKEDHVWCE 224
                 33455566664 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.35
         IBR  11 slesdpnlkwCp 22 
                 s+++++++ +C 
  CCD25082.1 250 SVNWNKKMSYCI 261
                 6899999****7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2882.57
//
Query:       CCD25083.1  [L=286]
Description: hypothetical protein NDAI_0E02660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-74  249.0   0.7    3.5e-74  249.0   0.7    1.9  2  Sec62            Translocation protein Sec62
  ------ inclusion threshold ------
      0.049   13.3   1.0      0.065   12.9   1.0    1.2  1  HlyIII           Haemolysin-III related
       0.19   11.8   3.1         11    6.1   5.1    2.4  2  MARVEL           Membrane-associating domain
        0.2   11.7   8.6       0.56   10.3   8.8    1.7  1  DUF3309          Protein of unknown function (DUF3309)
       0.26   11.4   1.5       0.47   10.6   1.5    1.4  1  DUF1230          Conserved in the green lineage and diatoms 2


Domain annotation for each model (and alignments):
>> Sec62  Translocation protein Sec62
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.0   0.7   9.7e-78   3.5e-74       2     215 ..      33     242 ..      32     247 .. 0.96
   2 ?    1.7   3.6     0.042   1.5e+02       4      46 ..     234     276 ..     232     286 .] 0.47

  Alignments for each domain:
  == domain 1  score: 249.0 bits;  conditional E-value: 9.7e-78
       Sec62   2 kkdffrakkvvralksekekkkskkkkeklkevkkkekaekvfkelkksqlalrveklkekekkkkkeekkkkkkkkkkvkleieeeqefvddnevYvW 100
                 ++dffr+k++vral+s+++kkks+++++ +++v+++e+a++vf++l+ksql+++++kl+++e+k++     + k++k++++l +++++++ ++ne+YvW
  CCD25083.1  33 TVDFFRYKRFVRALESPEYKKKSSNQPDLYPPVTSSEDARTVFILLIKSQLVVPATKLHNHECKAN-----GLKPNKDYPNLVLSNKATL-SPNEYYVW 125
                 579**************************************************************8.....9******************.******** PP

       Sec62 101 iYepkqlktlligllvvvailavvlFPLWPaelrkgvyYLSiaalgllglilalaivRlilflivllvtkgk.lhlWlfPnlfeDvGfldSFrPlYeye 198
                 +Y+pk++++++i+++v++++la+v++PLWP+++r+++yY+S++ lgl++++l++a++Rlil++++ll++++k  ++W+fPnlfeD+G+ldSF+PlY++ 
  CCD25083.1 126 NYNPKSFTDYVIVIAVIAILLALVCYPLWPRSMRRSSYYVSMGSLGLIVALLVIAVLRLILYVMSLLFVSKKtGGFWIFPNLFEDCGVLDSFKPLYGFG 224
                 ****************************************************************99988876368************************ PP

       Sec62 199 ekd.kkkkkkkkkkkkkk 215
                 e d ++++kk+k+ k++ 
  CCD25083.1 225 EVDsYSYQKKMKRIKRNL 242
                 877799999999888764 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.042
       Sec62   4 dffrakkvvralksekekkkskkkkeklkevkkkekaekvfke 46 
                 ++ r+k+ + ++++ +++ +++k++ +++e++++++++k++k+
  CCD25083.1 234 KMKRIKRNLDKKNKIAQTPSTDKEDIEKEEKNNDDDTTKISKT 276
                 4555555555555555555555544444444444444443333 PP

>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.0   1.8e-05     0.065      72     164 ..      97     185 ..      65     205 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
      HlyIII  72 lrkffaklDysgIslliagsylplilyalakapkagllylslilalgvlgiisklvplfsrpea..rplravlfillgllgvipllhlllvltql 164
                 ++ +    Dy +++l   ++  p ++y    +pk  + y+++i    v++i++ lv+    p +   + r ++++ +g+lg+i +l ++ vl  +
  CCD25083.1  97 ANGLKPNKDYPNLVLSNKATLSPNEYYVWNYNPKSFTDYVIVIA---VIAILLALVCY---PLWprSMRRSSYYVSMGSLGLIVALLVIAVLRLI 185
                 5555556699999999************9776666555555555...55666666666...333325667889*********9999877777644 PP

>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.18   6.5e+02      93     133 ..       8      78 ..       4      80 .. 0.78
   2 ?    6.1   5.1     0.003        11      35      93 ..     123     180 ..     108     212 .. 0.59

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.18
      MARVEL  93 afialaaglrdisca............................fe..snqysasltvrcgqaqaavafgfl 133
                 +  a+a+ lr+++                              +   s+++++ + ++++++ a ++f  l
  CCD25083.1   8 STLAIAKLLRHHKELkqrqglfqsrtvdffrykrfvralespeYKkkSSNQPDLYPPVTSSEDARTVFILL 78 
                 66788888888777788888888888888888888888776651157788899999999999999999876 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.003
      MARVEL  35 lgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlva 93 
                 + +++   +f+  v v++++++l++lv+y +  +   +++ +++ ++  +l++ l ++a
  CCD25083.1 123 YVWNYNPKSFTDYVIVIAVIAILLALVCYPLWPRS-MRRSSYYVSMGSLGLIVALLVIA 180
                 45555555666666666666666666666643233.33333344333333333333333 PP

>> DUF3309  Protein of unknown function (DUF3309)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   8.8   0.00016      0.56       3      45 ..     138     182 ..     135     192 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00016
     DUF3309   3 iLliiLillLiGalptwpys..rgwGYgPsGglGlvlvilliLlL 45 
                 ++ +i ill +   p wp s  r+  Y+ +G lGl++  l+i +L
  CCD25083.1 138 VIAVIAILLALVCYPLWPRSmrRSSYYVSMGSLGLIVALLVIAVL 182
                 4568999999999****98855678899********999988766 PP

>> DUF1230  Conserved in the green lineage and diatoms 27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.5   0.00013      0.47      19      85 ..     120     188 ..     108     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
     DUF1230  19 sllfsw..atlesaeylrrlllvwlvlllvvgpvaaasfspekellelllssalgalvlvalvllrlyl 85 
                 + ++ w    ++ ++y+  ++++ ++l+lv+ p+   s++ +++ +++   + ++al+++a++ l ly+
  CCD25083.1 120 NEYYVWnyNPKSFTDYVIVIAVIAILLALVCYPLWPRSMRRSSYYVSMGSLGLIVALLVIAVLRLILYV 188
                 556666225567799***********9********************************9999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1743  (0.0972168); expected 358.6 (0.02)
Passed bias filter:                      732  (0.0408277); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 2264.75
//
Query:       CCD25084.1  [L=506]
Description: hypothetical protein NDAI_0E02670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-81  274.6  34.9    1.3e-81  274.4  34.9    1.0  1  SLAC1          Voltage-dependent anion channel
  ------ inclusion threshold ------
        1.6    9.0   4.7        1.3    9.4   0.1    2.8  3  DUF5056        Domain of unknown function (DUF5056)
        4.4    7.0   9.8        4.3    7.0   0.1    3.3  3  Neurensin      Neurensin


Domain annotation for each model (and alignments):
>> SLAC1  Voltage-dependent anion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.4  34.9   2.1e-85   1.3e-81       1     322 [.      10     423 ..      10     425 .. 0.92

  Alignments for each domain:
  == domain 1  score: 274.4 bits;  conditional E-value: 2.1e-85
       SLAC1   1 hftpawFaivMGtgilalllka.lp..arglriislilfllalvlfllllvlyllrfilype......avrkelrhpveslflgtfpmglltilnglll 90 
                 hf+p +F++vMGtgi++ ll + +p  a +l+i+s+i+f++a+++f++l ++ +l++++y +      ++++++r+ ++++f+gt+pmgl+t++n++++
  CCD25084.1  10 HFEPFFFVMVMGTGISSDLL-HsFPypACWLKICSYIMFAIACIIFVILQIFAILHLFIYSSengfqaYFNHYFRNLNHNVFWGTYPMGLVTLINYISM 107
                 8*******************.6599878********************************555555558888888899********************* PP

       SLAC1  91 vl.pg.......ewlatlalvllWigvllslltavvvvfll...............................ftekeekleeitpawllpvvgllvval 150
                 ++ ++       ++l++l+++++W++vl+sll a++++f++                               +++k+  +++++ ++ll+v++++vva+
  CCD25084.1 108 IAiKEaagtvhaKRLMYLVYIMWWYDVLISLLSAWGISFIIwqdynytenknknkdcrsnsnqenleitrsfLSRKTA-HSQLKSILLLAVIPIVVVAS 205
                 776667888999***************************666*************************88885445555.99****************** PP

       SLAC1 151 lgallaes......qnpslqllgilvvslllwglGlllalvlfvlylyrlithklppaelrptlfiplGplgqgalallllgkaapk............ 231
                 +++ ++++      +n+++qll +l+v+ llw+++++++++l+++y+++l+++k+p++++++tlf++lGplgqg++++lll+++++k            
  CCD25084.1 206 SSGIFTMTdlfsihFNRNIQLL-TLFVTALLWLHAIIFVFILISIYFWNLYVNKIPAMSQVFTLFLVLGPLGQGSFGILLLTENVRKyvqryyqtntgt 303
                 *******9**************.**************************************************************999*********** PP

       SLAC1 232 ............aaevlkvlalllalflwglglfwllvavlsvls...............lpvrlkfslswWaftFPlgalalatielgka....lese 299
                             +++++kv++l+lal l+++g+f+ +++++s++s                    +f++++Wa+tFP+g+++l+++e+  +    ++++
  CCD25084.1 304 aisleqqiltlsIPWSFKVMGLVLALGLLAMGYFFSFISFISIISysqkreidpetgkykR--IYHFHKGFWAMTFPMGTMSLGSTEIFVQyneyVPTG 400
                 *********************************************8887777777665541..678**********************54444447799 PP

       SLAC1 300 afkvlgtillvllvlvwllvlvg 322
                 af+v+gti++v+++l+++++l+g
  CCD25084.1 401 AFRVIGTIYAVICILWTIFCLLG 423
                 9********************97 PP

>> DUF5056  Domain of unknown function (DUF5056)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   0.00021       1.3      19      62 ..      22      64 ..      18      84 .. 0.86
   2 ?   -2.2   0.3      0.82   4.9e+03      44      70 ..     195     221 ..     175     244 .. 0.59
   3 ?   -0.2   0.0       0.2   1.2e+03      36      64 ..     412     439 ..     403     451 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00021
     DUF5056 19 nGFsrrVmrrlPerskrlariwtavcavlavvLFvvldGlelll 62
                 G s   ++++P  + +l +i + +++ +a+++Fv+l+ +++l 
  CCD25084.1 22 TGISSDLLHSFPYPACWL-KICSYIMFAIACIIFVILQIFAILH 64
                5899999******99887.6899999**********99887764 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.82
     DUF5056  44 cavlavvLFvvldGlelllevlrevft 70 
                  av+ +v      G+ +++++++  f+
  CCD25084.1 195 LAVIPIVVVASSSGIFTMTDLFSIHFN 221
                 334444555555555555555554444 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.2
     DUF5056  36 lariwtavcavlavvLFvvldGlelllev 64 
                 +  +wt++c++ +    +++ G+++ll+ 
  CCD25084.1 412 ICILWTIFCLLGS-AYIYWIPGMKSLLQS 439
                 5578999997655.455678888887765 PP

>> Neurensin  Neurensin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       1.1   6.8e+03      97     113 ..      41      57 ..      29      65 .. 0.66
   2 ?    7.0   0.1   0.00073       4.3      72     118 ..     203     250 ..     181     263 .. 0.84
   3 ?    4.9   0.9    0.0032        19       4      50 ..     289     332 ..     288     427 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.1
   Neurensin  97 laGavllclGglllals 113
                 +   ++++++++++++ 
  CCD25084.1  41 ICSYIMFAIACIIFVIL 57 
                 44456677777766654 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00073
   Neurensin  72 v.ksegelvvvDkqaiefnnaLdtlklaGavllclGglllalsllvpa 118
                 v +s g + ++D   i+fn+ +++l+l  + ll l ++++++ l+   
  CCD25084.1 203 VaSSSGIFTMTDLFSIHFNRNIQLLTLFVTALLWLHAIIFVFILISIY 250
                 23689999**********************************999544 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0032
   Neurensin   4 vrsYlhqfYedctgsalekdeeklllqrakqksesllwkvslvvgtl 50 
                 vr+Y +++Y++ tg+a + +++ l     + +++  ++ + l++g+l
  CCD25084.1 289 VRKYVQRYYQTNTGTAISLEQQILT---LSIPWSFKVMGLVLALGLL 332
                 899**********988777766333...3333665555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1433  (0.0799264); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3587.67
//
Query:       CCD25085.1  [L=483]
Description: hypothetical protein NDAI_0E02680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-63  212.4   0.2    1.4e-62  211.6   0.2    1.3  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
      5e-35  120.1   0.6    5.4e-33  113.6   0.1    3.0  2  Pyr_redox_dim   Pyridine nucleotide-disulphide oxidoreductase
    8.2e-20   71.2   0.8    8.2e-20   71.2   0.8    3.1  3  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
    9.9e-15   54.6   5.5    7.6e-14   51.7   5.5    2.0  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    1.1e-06   28.4   0.1    3.6e-06   26.6   0.0    1.7  2  FAD_oxidored    FAD dependent oxidoreductase
    2.6e-06   26.4   4.3       0.41    9.3   0.0    3.9  4  HI0933_like     HI0933-like protein
    2.8e-06   26.7   0.0    5.2e-06   25.8   0.0    1.4  1  K_oxygenase     L-lysine 6-monooxygenase (NADPH-requiring)
    5.9e-05   22.5   0.3      0.033   13.5   0.0    2.4  2  AlaDh_PNT_C     Alanine dehydrogenase/PNT, C-terminal domain
    0.00013   21.2   1.7      0.049   12.7   1.2    2.5  2  GIDA            Glucose inhibited division protein A
     0.0004   20.3   0.1      0.001   19.0   0.1    1.7  1  3HCDH_N         3-hydroxyacyl-CoA dehydrogenase, NAD binding 
  ------ inclusion threshold ------
      0.029   13.7   1.5       0.29   10.5   0.0    2.8  3  2-Hacid_dh_C    D-isomer specific 2-hydroxyacid dehydrogenase
      0.053   14.0   0.1         14    6.2   0.0    2.5  2  NAD_binding_7   Putative NAD(P)-binding
      0.054   13.6   0.0        0.1   12.8   0.0    1.3  1  DNA_pol3_chi    DNA polymerase III chi subunit, HolC
      0.081   12.6   0.1       0.22   11.2   0.0    1.8  2  ApbA            Ketopantoate reductase PanE/ApbA
       0.15   12.0   0.0       0.38   10.7   0.0    1.8  1  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
       0.41    9.8   5.6        3.7    6.7   0.2    2.6  2  FAD_binding_3   FAD binding domain
        1.8    8.8   4.8        0.3   11.3   0.6    2.0  2  NAD_binding_8   NAD(P)-binding Rossmann-like domain
        2.7    7.5   5.2        7.6    6.0   0.1    2.8  3  DAO             FAD dependent oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.6   0.2   1.4e-65   1.4e-62       1     294 []      24     349 ..      24     349 .. 0.96

  Alignments for each domain:
  == domain 1  score: 211.6 bits;  conditional E-value: 1.4e-65
                  CSEEEE--SHHHHHHHHHHHHHTS-EEEEE...TTHCHHHCSHHHHCHHHHHHHHHHHHH..............................HHHHCHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxx RF
  Pyr_redox_2   1 kdvvviGgGpAGlaaaltlaqagakvtlve...legtclnggcllskallgvaedaeias..............................evvkklnq 65 
                  +d++viGgG +G+a ++++a +gak +++e   l+gtc+n+gc+++k+++ +++ a  +s                                v +ln 
   CCD25085.1  24 YDYLVIGGGSGGVASSRRAASYGAKCLVIEgkaLGGTCVNVGCVPKKVMWYASDLATRIShaneyglyqdfklnkenltfnwpefktkrdAYVHRLNG 121
                  6899*************************99***********************9998889*****************************9999**** PP

                  HCCCCHCCTCEEEEESCEEEEETEEEC.....TCEEEEEESEEEE---EEE-BC.TCTTC.TTBEECCSECHHHHHHCCSS-TSEEEEES-SHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2  66 gielllgeevvkidpgkkkvklekkke.....gdeekiaydklvlAtGssprdl.gipGvaenvgklvrtldsaealklkllpkrivvvGgGyiGvEl 157
                   +e+ l++e+v++ +g++++    ++e     g++e + +d+ ++AtG++p  + gipG  e++       ds+  ++l+++pk++vvvG+GyiG+El
   CCD25085.1 122 IYENNLKKEGVDVVFGWAQFNKDGNVEvktrsGETEVYSADRYLIATGGKPVYPkGIPGF-EYG------TDSDGFFRLENQPKKVVVVGAGYIGTEL 212
                  **********************9999999*******************************.555......699************************* PP

                  HHHHHHHT-EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTE..EEEEEETTSCE.EEESEEEE-S-EEES-HHCS.HCCT-E CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx.xxxxxx RF
  Pyr_redox_2 158 AaalaklgkevtlveardrllraldkelsaaleealekeGvevklgtsvkeidgnge..klevvledgee.idadlvvvavGvrpstelle.eklgle 251
                  A++++ lg++++l+ ++++llr++d++++++++++  keG++v+  +++++i++++   kl+ +l++ e+ +d+d +++ +G+r    +l+ e++g+e
   CCD25085.1 213 AGVFHGLGSDTHLIIRGETLLRKFDDSIQETITDHYVKEGINVHKSSQIEKIEKDEMtkKLTIHLNTSEVlEDVDELIWTIGRRSFL-GLGlENIGIE 309
                  ******************************************************999877777777777779************996.6689****** PP

                  EEETTEEE--TTSBESSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 252 lderggivvdeflrtnvpgiyaiGDvaggkggpelaqaAvqqG 294
                  l+++  i +de+++tnvp++y +GDv+   g++el+++A+++G
   CCD25085.1 310 LNSKQEIITDEYQNTNVPNVYSLGDVQ---GRVELTPVAIAAG 349
                  ***************************...*********9987 PP

>> Pyr_redox_dim  Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.11   1.1e+02      17      77 ..     123     217 ..     119     226 .. 0.52
   2 !  113.6   0.1   5.4e-36   5.4e-33       1     109 [.     372     482 ..     372     483 .] 0.98

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.11
                    -HHHHHHHHSGEEEEEEEEE..................................CGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHH CS
  Pyr_redox_dim  17 teeeAkaagieikvgkfpfk..................................angralayaetkgfvKlvadaktgkvlGahivGpgageliq 77 
                     e+ +k++g++++ g ++f+                                   +    +  +++gf++l  + k+  v+Ga  +G + + +++
     CCD25085.1 123 YENNLKKEGVDVVFGWAQFNkdgnvevktrsgetevysadryliatggkpvypkGIPGFEYGTDSDGFFRLENQPKKVVVVGAGYIGTELAGVFH 217
                    56666666666666666666333333333333333333333333333332222233333344446777777666677777777777776666665 PP

  == domain 2  score: 113.6 bits;  conditional E-value: 5.4e-36
                    BEEEEESSSEEEEEES-HHHHHHHHSG..EEEEEEEEECGHHHCHTTHTEEEEEEEEETTTTBEEEEEEECTTHHHHHHHHHHHHHTTSBHHHHHT CS
  Pyr_redox_dim   1 iptvvftdpevasvGlteeeAkaagie..ikvgkfpfkangralayaetkgfvKlvadaktgkvlGahivGpgageliqelavaikagltvedlad 94 
                    +p+vvf++pe++s+Gl+e+eA  ++++  ik ++++f+a+++a++ +++ +  K+++   ++kv+G+hivG++ +e++q++ vaik+g+t++d+++
     CCD25085.1 372 VPSVVFSHPEAGSIGLSEKEAISKYGKenIKLYNTKFTAMYYAMLTEKSPTRYKIICVGPEEKVVGLHIVGDSSAEILQGFGVAIKMGATKSDFDN 467
                    79************************99******************************************************************** PP

                    SBSSSSSTGGGGHCH CS
  Pyr_redox_dim  95 tihihPtlsealkea 109
                    +++ihPt +e+l+++
     CCD25085.1 468 CVAIHPTSAEELVTM 482
                    ************987 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.3      0.65   6.4e+02       3      29 ..      27      53 ..      25      56 .. 0.88
   2 ?   -1.3   0.0       3.4   3.4e+03      45      60 ..     122     137 ..     115     153 .. 0.81
   3 !   71.2   0.8   8.2e-23   8.2e-20       1      77 [.     199     274 ..     199     282 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.65
                EEECSSHHHHHHHHHHHHTTSEEEEEE CS
   Pyr_redox  3 vvvGgGyiglElAgalaelgkkVtvve 29
                +v+GgG  g+     +a +g+k  v+e
  CCD25085.1 27 LVIGGGSGGVASSRRAASYGAKCLVIE 53
                7*********99999999999998887 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 3.4
                 HHHHHHHHTTEEEECS CS
   Pyr_redox  45 ilqeklekngievlln 60 
                 i +++l+k+g++v+++
  CCD25085.1 122 IYENNLKKEGVDVVFG 137
                 6788999999999875 PP

  == domain 3  score: 71.2 bits;  conditional E-value: 8.2e-23
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEETTSEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqeklekngievllntkveeiegsedgvesvk 77 
                 kvvvvG+Gyig ElAg+++ lg++++++ r+++llr++D+ +++ ++++  k+gi+v+ ++++e+ie++e + ++++
  CCD25085.1 199 KVVVVGAGYIGTELAGVFHGLGSDTHLIIRGETLLRKFDDSIQETITDHYVKEGINVHKSSQIEKIEKDEMT-KKLT 274
                 79*****************************************************************99985.4444 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   5.5   7.6e-17   7.6e-14       1     305 []      27     333 ..      27     333 .. 0.78

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 7.6e-17
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgnignsiyr.........ypkem..tfispsftsekleipdlnaiseetspafslkeeklsrkealeYl 87 
                  ++iG+G  G+a+   +   g  + l++E +++g +  +         ++++   t is   + ++ ++ +  +  ++++ +f   e k +r+ +++ l
   CCD25085.1  27 LVIGGGSGGVASSRRAASYGA-KCLVIEGKALGGTCVNvgcvpkkvmWYASDlaTRIS---HANEYGLYQ-DFKLNKENLTFNWPEFKTKRDAYVHRL 119
                  69*******************.79*****99999887644433333355554113444...456666655.344455555677778899999999999 PP

  Pyr_redox_3  88 revaksfelpiklfeeVesvkk..edegfevetske...tyeAkkviiAtGefdkPnkl.nipGeeklvkhyskvkefhkyagqkvvViGgknSavDa 179
                  + + + ++l+ +    V   ++  +d++ ev+t+++   +y+A++ +iAtG   kP ++ +ipG e + + +  +  + + + +kvvV+G++  + + 
   CCD25085.1 120 NGIYE-NNLKKEGVDVVFGWAQfnKDGNVEVKTRSGeteVYSADRYLIATGG--KPVYPkGIPGFE-YGTDSDGFFRL-ENQPKKVVVVGAGYIGTEL 212
                  99976.58876666666666666456779****9865669***********8..7777637****9.99999999999.8899*************** PP

  Pyr_redox_3 180 AlelvrkgaeVtvvtrgseiekeesdpsyslkpdienrleelvkeekikvlfnaevkeik..ekeeeykvktedgkkvevkddvvlatGykpdlsf.l 274
                  A  +   g++ ++++rg+++ ++   ++ s+    ++ + + + +e i+v++ +++++i+  e++++ +++ ++ + +e  d+ +  +G ++ l + l
   CCD25085.1 213 AGVFHGLGSDTHLIIRGETLLRK---FDDSI----QETITDHYVKEGINVHKSSQIEKIEkdEMTKKLTIHLNTSEVLEDVDELIWTIGRRSFLGLgL 303
                  *****************987775...44444....4444443334449***********9334456778899999999999*************9999 PP

  Pyr_redox_3 275 kkslfeldedgrpvlteeteetnvpglflaG 305
                  ++ ++el ++++  +t+e + tnvp+++  G
   CCD25085.1 304 ENIGIEL-NSKQEIITDEYQNTNVPNVYSLG 333
                  99****9.6666778999**********877 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   3.6e-09   3.6e-06       1     144 [.      25     169 ..      25     203 .. 0.75
   2 ?   -1.1   0.0      0.93   9.3e+02      83     124 ..     235     274 ..     210     284 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 3.6e-09
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvatdignkaeeqvvtgiareflerlrqrggarlk.krskw.n.....tfepevak 90 
                   D +V+GGg++Gva    Aa  Gak l++e  + lGG+  + +  +   ++ ++ ++t+i       l q+ + +++  +++w +        ++ ++
    CCD25085.1  25 DYLVIGGGSGGVASSRRAASYGAKCLVIE-GKALGGTCVNVGCVPKKVMWYASDLATRISHANEYGLYQDFKLNKEnLTFNWpEfktkrDAYVHRLN 120
                   669*********************87776.789*******999999888888866666666666666553333222255555423444446788899 PP

  FAD_oxidored  91 avleemlaeagvtvllntrlvevekegkriesvtveskeg.rktirAkvfiDATg 144
                    ++e+ l+++gv+v+++    + +k+g     v+v++++g +++++A++++ ATg
    CCD25085.1 121 GIYENNLKKEGVDVVFGW--AQFNKDG----NVEVKTRSGeTEVYSADRYLIATG 169
                   99*****999*****985..5566665....577777775599999999988887 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.93
  FAD_oxidored  83 tfepevakavleemlaeagvtvllntrlvevekegkriesvt 124
                    f+ ++ +++ ++ ++e g++v   ++++++ek++   +++t
    CCD25085.1 235 KFDDSIQETITDHYVKE-GINVHKSSQIEKIEKDE-MTKKLT 274
                   58999999999999999.*********99999985.344444 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.5   0.00059      0.59       2      32 ..      25      55 ..      24      64 .. 0.90
   2 !    5.4   0.0    0.0064       6.4     117     167 ..     125     173 ..     117     187 .. 0.70
   3 ?    1.4   0.1       0.1     1e+02       2      39 ..     199     236 ..     198     239 .. 0.94
   4 !    9.3   0.0   0.00041      0.41     111     196 ..     240     327 ..     237     338 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00059
                 SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like  2 dviviGgGaAGlmaAisaakrgkrVllleka 32
                 d +viGgG  G+  + +aa+ g++ l++e +
   CCD25085.1 25 DYLVIGGGSGGVASSRRAASYGAKCLVIEGK 55
                 779*************************986 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0064
                  HHHHHHT-EEE-S--EEEEECETTE.EEEEE...TTEEEEESEEEE----SS- CS
  HI0933_like 117 kelkeagvklrletevksvekeedgkfrvkt..kseeeleadklvlAtGGlSi 167
                  ++lk++gv++     ++++  ++dg+++vkt   ++e ++ad+ ++AtGG+ +
   CCD25085.1 125 NNLKKEGVDVVF--GWAQF--NKDGNVEVKTrsGETEVYSADRYLIATGGKPV 173
                  555666665554..46666..5677788888523666789**********965 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.1
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVlllekakklgrKi 39 
                  +v+v+G+G  G   A   +  g+++ l+ ++++l+rK+
   CCD25085.1 199 KVVVVGAGYIGTELAGVFHGLGSDTHLIIRGETLLRKF 236
                  89**********************************98 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00041
                  HHHHHHHHHHHHT-EEE-S--EEEEECETT.E.EEEEE.TTEEEE.ESEEEE----SS-GGGT--SHHHHHHHHTT--EEEEEEES-- CS
  HI0933_like 111 ivdallkelkeagvklrletevksvekeed.gkfrvktkseeele.adklvlAtGGlSiPklGstgkgyklaeqfghtivplrpalvp 196
                  i ++++ +  ++g++++ +++++++ek+e  +k++++++++e le  d+l+ ++G  S+  lG ++ g++l ++ ++   + + ++vp
   CCD25085.1 240 IQETITDHYVKEGINVHKSSQIEKIEKDEMtKKLTIHLNTSEVLEdVDELIWTIGRRSFLGLGLENIGIELNSKQEIITDEYQNTNVP 327
                  556677778899*************99876256788886666664389*********************9999988877777777666 PP

>> K_oxygenase  L-lysine 6-monooxygenase (NADPH-requiring)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   5.2e-09   5.2e-06     134     272 ..     146     275 ..     132     291 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 5.2e-09
  K_oxygenase 134 tveskdaegeeeelearnlvlgvGtepkiPevleklegkervvHsseylerkeellakkriaVvGsGqSaaeifedllrrqkkvelklvtrsealepl 231
                  +ve+k+++ge+e ++a + ++++G++p  P+ +  +e     + s+ + +    ++++k+++VvG+G  + e++   +   +  + +l++r+e l   
   CCD25085.1 146 NVEVKTRSGETEVYSADRYLIATGGKPVYPKGIPGFEY---GTDSDGFFRL---ENQPKKVVVVGAGYIGTELAGVFHGLGS--DTHLIIRGETLLRK 235
                  4677779***************************9883...4555555555...489***************9988887766..788999*9998777 PP

  K_oxygenase 232 ddspfvneifsPeyvdyfyslpeekreallkeqkatnykgv 272
                   d ++ +e ++ +yv++  +  ++ + + +++++ t+   +
   CCD25085.1 236 FDDSI-QETITDHYVKEGINVHKSSQIEKIEKDEMTKKLTI 275
                  77666.899999****9999999999888888876655444 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1    0.0041       4.1      18      58 ..      15      53 ..       3      63 .. 0.86
   2 !   13.5   0.0   3.3e-05     0.033      27      78 ..     196     257 ..     192     289 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0041
                 ETTCEETCB---EEEEESTSHHHHHHHHHHHHTT-EEEEEE CS
  AlaDh_PNT_C 18 tlaGgvpgvepakvlviGgGvaGlqAiatakglgakVtvlD 58
                 ++ ++++  ++   lviGgG  G+++ + a++ gak  v++
   CCD25085.1 15 IMSTTIK--KHYDYLVIGGGSGGVASSRRAASYGAKCLVIE 53
                 5667777..88899*********************988776 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.3e-05
                  ---EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEE..........H CS
  AlaDh_PNT_C  27 epakvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvev..........l 78 
                  +p kv+v+G+G  G++ + + +glg ++ ++   ++ l+++++  +++++           +
   CCD25085.1 196 QPKKVVVVGAGYIGTELAGVFHGLGSDTHLIIRGETLLRKFDDSIQETITDhyvkeginvhK 257
                  689****************************9999999999995444455434444544432 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   1.2   4.9e-05     0.049       3      43 ..      27      69 ..      25      86 .. 0.89
   2 !    6.6   0.0    0.0035       3.5       1      32 [.     199     229 ..     199     281 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.9e-05
                EEE-SSHHHHHHHHHHHHTT--EEEE..ES-GGGTT--SSSSE CS
        GIDA  3 iViGgGhAGceAAlaaarlGakvlLi..thkldtiaelsCnps 43
                 ViGgG  G++ +  aa  Gak l i      +t+++++C p 
  CCD25085.1 27 LVIGGGSGGVASSRRAASYGAKCLVIegKALGGTCVNVGCVPK 69
                7*************************8777889*******996 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0035
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-G CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkl 32 
                 +v+V+G+G  G+e A     lG ++ Li  + 
  CCD25085.1 199 KVVVVGAGYIGTELAGVFHGLGSDTHLII-RG 229
                 69*************************92.22 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1     1e-06     0.001       1      85 [.     199     285 ..     199     292 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1e-06
                 EEEEE--SCCHHHHHHHHHHTT-EEEEE-S-HHHHHHHHHHHHHHHHCCTTTTSS-HHHHCCCHHCEE...EES-HHHHHC-SEEEE- CS
     3HCDH_N   1 kvaviGaGtmGagiaavfasagleVvlvdiseealekalekieksleklvekgklkeeeveaalaris...fttdleeavdadlviEa 85 
                 kv v+GaG +G+++a vf   g +++l+ + e  l+k  ++i++++     k+ ++  + ++++++i+   +t++l    ++  v E 
  CCD25085.1 199 KVVVVGAGYIGTELAGVFHGLGSDTHLIIRGETLLRKFDDSIQETITDHYVKEGIN-VHKSSQIEKIEkdeMTKKLTIHLNTSEVLED 285
                 699*****************************************887776666666.2233334444311133333333333334443 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2       0.9     9e+02      40      66 ..      27      53 ..      13      71 .. 0.88
   2 ?   10.5   0.0   0.00029      0.29      31      63 ..     192     224 ..     181     242 .. 0.85
   3 ?    0.2   0.0      0.42   4.2e+02      41      64 ..     435     458 ..     429     480 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.9
                  EEES-SHHHHHHHHHHHHTT-EEEEES CS
  2-Hacid_dh_C 40 GiiGlGrIGqavakrlkafgmkviayd 66
                   +iG G+ G a  +r+++ g+k ++++
    CCD25085.1 27 LVIGGGSGGVASSRRAASYGAKCLVIE 53
                  699*******************99875 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00029
                   BS-GTTSEEEEES-SHHHHHHHHHHHHTT-EEE CS
  2-Hacid_dh_C  31 gkelsgktvGiiGlGrIGqavakrlkafgmkvi 63 
                     e + k+v ++G+G IG+++a +++++g +  
    CCD25085.1 192 RLENQPKKVVVVGAGYIGTELAGVFHGLGSDTH 224
                   5577889********************998765 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.42
                   EES-SHHHHHHHHHHHHTT-EEEE CS
  2-Hacid_dh_C  41 iiGlGrIGqavakrlkafgmkvia 64 
                   ++Gl  +G + a++l++fg+ + +
    CCD25085.1 435 VVGLHIVGDSSAEILQGFGVAIKM 458
                   7899999************98755 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.026        26      10      39 ..      26      55 ..      21     136 .. 0.83
   2 ?    6.2   0.0     0.014        14       6      37 ..     196     227 ..     191     297 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.026
  NAD_binding_7 10 vlvvGgGevAarkvrklleagakvtvvape 39
                    lv+GgG+ +    r+ +++gak  v+  +
     CCD25085.1 26 YLVIGGGSGGVASSRRAASYGAKCLVIEGK 55
                   69******9999999**********99877 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.014
  NAD_binding_7   6 kgkkvlvvGgGevAarkvrklleagakvtvva 37 
                    + kkv+vvG+G ++++ +  +   g + +++ 
     CCD25085.1 196 QPKKVVVVGAGYIGTELAGVFHGLGSDTHLII 227
                    569***********998888877777766654 PP

>> DNA_pol3_chi  DNA polymerase III chi subunit, HolC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0    0.0001       0.1      28      71 ..     269     312 ..     260     335 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.0001
  DNA_pol3_chi  28 agkrvlvlcedeeqlealdelLWtfepdsFlPHglagegdaaaa 71 
                   ++k+++++++++e le +del Wt    sFl  gl++ g + ++
    CCD25085.1 269 MTKKLTIHLNTSEVLEDVDELIWTIGRRSFLGLGLENIGIELNS 312
                   57899**************************9888776666555 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.2   6.1e+03      16      28 ..     126     138 ..     120     163 .. 0.52
   2 ?   11.2   0.0   0.00022      0.22       1      61 [.     200     258 ..     200     287 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.2
                 HHHHHTHCEEEE- CS
        ApbA  16 kLakagadvtlil 28 
                 +L+k g dv++ +
  CCD25085.1 126 NLKKEGVDVVFGW 138
                 4555555554433 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00022
                 EEEES-SHHHHHHHHHHHHHTHCEEEE-SCHHHHHHHHHCEEEEETTCEEEEEECEEECCH CS
        ApbA   1 iailGaGaiGsllaakLakagadvtlilrsrrlealkknGlrltseggeeilrppealsae 61 
                 ++++GaG iG+ la+  +  g d +li r++    l+k + ++++  +++++++  ++ ++
  CCD25085.1 200 VVVVGAGYIGTELAGVFHGLGSDTHLIIRGE--TLLRKFDDSIQETITDHYVKEGINVHKS 258
                 689****************************..3366666667776677777777777776 PP

>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00038      0.38       1      33 [.     199     248 ..     199     317 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00038
                     -EEEE--SHHHHHHHHHHHTTT--EEEE-S-H.................H CS
  NAD_Gly3P_dh_N   1 kiavlGaGswGtalAkvlaenghevrlwvree.................e 33 
                     k+ v+GaG  Gt lA v++  g++++l+ r e                  
      CCD25085.1 199 KVVVVGAGYIGTELAGVFHGLGSDTHLIIRGEtllrkfddsiqetitdhY 248
                     799**************************999555444444443333332 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2    0.0037       3.7       3      31 ..      25      53 ..      23      57 .. 0.92
   2 ?    4.9   0.8     0.013        13       3      36 ..     199     232 ..     198     245 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0037
                   EEEEE--SHHHHHHHHHHHHTTHHEEEEE CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallLseaGvrvvlve 31
                   d l++G+G  G+ +++  +++G +++++e
     CCD25085.1 25 DYLVIGGGSGGVASSRRAASYGAKCLVIE 53
                   669*************************9 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSS CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrstt 36 
                    +V++VGaG  G  la + +  G +++l+ + +t 
     CCD25085.1 199 KVVVVGAGYIGTELAGVFHGLGSDTHLIIRGETL 232
                    69**********************9999887665 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6    0.0003       0.3       1      36 [.      28      62 ..      28      94 .. 0.79
   2 ?   -2.8   0.3       7.7   7.6e+03       1       8 [.     202     209 ..     202     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0003
                   EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG- CS
  NAD_binding_8  1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraa 36
                   ++G+G +G +  +++a +g+++l++e    lGG + 
     CCD25085.1 28 VIGGGSGGVASSRRAASYGAKCLVIEG-KALGGTCV 62
                   8************************85.58888775 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 7.7
                    EE--SHHH CS
  NAD_binding_8   1 IvGaGlsG 8  
                    +vGaG  G
     CCD25085.1 202 VVGAGYIG 209
                    8****987 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1    0.0077       7.6       1      35 [.      25      59 ..      25     103 .. 0.90
   2 ?   -1.5   0.0       1.4   1.4e+03     155     202 ..     126     170 ..     109     173 .. 0.67
   3 ?    2.7   0.5     0.077        77       1      12 [.     199     210 ..     199     213 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0077
                EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSS CS
         DAO  1 dvviiGGGiiGlstAyeLarrg..Vtllekgdiagsg 35
                d ++iGGG  G++  + +a  g   +++e +  +g g
  CCD25085.1 25 DYLVIGGGSGGVASSRRAASYGakCLVIEGK-ALG-G 59
                789***************999999*****98.666.4 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.4
                 HHHHTT-EEEESECEEEEEEEETCEEEEEEECT.EEE.E.EEEEEEE--GG CS
         DAO 155 aaealGveilegtevtgleeedgkvwgverttp.gen.d.aadavVnaaGa 202
                  +++ Gv++++g     + ++dg  ++v  +t+ ge+ + +ad   +a+G 
  CCD25085.1 126 NLKKEGVDVVFG--WAQF-NKDGN-VEV--KTRsGETeVySADRYLIATGG 170
                 478889999998..4456.33444.455..555576642567889999995 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.077
                 EEEEECTSHHHH CS
         DAO   1 dvviiGGGiiGl 12 
                 +vv++G+G+iG 
  CCD25085.1 199 KVVVVGAGYIGT 210
                 59*********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3514.02
//
Query:       CCD25086.1  [L=236]
Description: hypothetical protein NDAI_0E02690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-56  188.7   0.2    6.2e-56  187.7   0.2    1.5  1  Ribosomal_S6e  Ribosomal protein S6e


Domain annotation for each model (and alignments):
>> Ribosomal_S6e  Ribosomal protein S6e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.7   0.2   3.5e-60   6.2e-56       1     125 []       1     126 [.       1     126 [. 0.99

  Alignments for each domain:
  == domain 1  score: 187.7 bits;  conditional E-value: 3.5e-60
                    -EEEEEETTTTEEEEEE-.CHHHCTTCTT-BSSEEEECCTTTSSSTS-EEEEEEEEETTC-BB-TTS-SSSEEEEEEETTSSSS-SSSSS-EEEEE CS
  Ribosomal_S6e   1 mklnisdpatgkqkliev.dekklrtligkrigeevdgdalGeelkgyvlkitggsdkqGfpmkqgvltpgrvrlLlskggvgyrprrkGerkrks 95 
                    mk+nis+p++g+qk+ie+ de++ r +++krig+evdg+++G+e+kgy++ki+gg+dkqGfpmkqgvl p+rv+lLlskg ++yrprr+Gerkrks
     CCD25086.1   1 MKFNISYPVNGTQKTIEIdDEHRIRVFYDKRIGQEVDGETVGDEFKGYTFKISGGNDKQGFPMKQGVLLPTRVKLLLSKGVSCYRPRRTGERKRKS 96 
                    9*********************************************************************************************** PP

                    EE-SB--SSEEEEEEEEEE--SS--TTTSS CS
  Ribosomal_S6e  96 vrGcivsadisqlnlvivkkgekdiegltd 125
                    vrG iv  d+++l+lvi+kkge++ eg+td
     CCD25086.1  97 VRGAIVGPDLAVLSLVITKKGEQEFEGVTD 126
                    ****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1292  (0.072062); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1910.53
//
Query:       CCD25087.1  [L=662]
Description: hypothetical protein NDAI_0E02700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-21   75.7   0.0    2.7e-21   74.8   0.0    1.5  1  SRF-TF    SRF-type transcription factor (DNA-binding and dime


Domain annotation for each model (and alignments):
>> SRF-TF  SRF-type transcription factor (DNA-binding and dimerisation domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   1.5e-25   2.7e-21       2      48 .]      11      57 ..      10      57 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 1.5e-25
      SRF-TF  2 IeneraRqvtFsKRrnGLfKKAsELsvLcgvevavvvfspngklytf 48
                I +er+R+vtF KR++GLfKKA+EL+vLc+v+vav++ ++n+ +y+f
  CCD25087.1 11 IHDERNRTVTFIKRKAGLFKKAHELAVLCQVDVAVIILGSNNTFYEF 57
                99*******************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2751  (0.153439); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        79  (0.00440627); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.87u 0.30s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 4397.34
//
Query:       CCD25088.1  [L=330]
Description: hypothetical protein NDAI_0E02710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.5e-91  304.0  10.0    9.9e-91  303.8  10.0    1.0  1  Ceramidase  Ceramidase
  ------ inclusion threshold ------
      0.092   12.8   2.5       0.14   12.2   0.1    2.2  2  Vma12       Endoplasmic reticulum-based factor for assembly o
       0.11   13.0   0.0       0.26   11.8   0.0    1.7  1  DUF2660     Protein of unknown function (DUF2660)


Domain annotation for each model (and alignments):
>> Ceramidase  Ceramidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.8  10.0   1.7e-94   9.9e-91       1     262 [.      15     299 ..      15     300 .. 0.96

  Alignments for each domain:
  == domain 1  score: 303.8 bits;  conditional E-value: 1.7e-94
  Ceramidase   1 gyWgpvtStidwCEenYvvtpyiAEfvNTlsnllfillallgiynaakkklekrfllaylglalvGlgSalFHaTLkyetQllDelsmiyatalvlyav 99 
                 g+Wg++t+ idwCEenYvv++yiAE+ NTl+nl f++ a + iy+a+++klekrf+l+ lg+alvG+gS+lFH+TLk+++QllDel+m+yat+++ +++
  CCD25088.1  15 GFWGETTAIIDWCEENYVVSNYIAEWSNTLTNLGFVMAASYSIYCAYRNKLEKRFILIGLGFALVGVGSWLFHMTLKFHFQLLDELPMVYATSIPSWSL 113
                 79************************************************************************************************* PP

  Ceramidase 100 fse...........................kksrstrvllgvlltalavvvtllylvlkepvlhqvafalltvlvllrsiyliekkvdksdeaakkevk 171
                 fse                           k  ++++ ++g l+ta++ ++t++ylv ++p+++qv++++l+vlv+ +s y+  k++  + +++k+++ 
  CCD25088.1 114 FSEiyhlkknenntsdgnsvavnvnnsenkKIPLKEQLIFGGLITAFVSFLTWVYLVKQDPIIFQVLYGFLNVLVVSTSGYIAYKNM--QTPTTKRNLF 210
                 ********9999999999999988876654444559***********************************************9999..68******** PP

  Ceramidase 172 klallgliifllgfliWnlDnlfCstltrlrra.iglplgvllelHgwWHiltgigayilivlleylrvekkgkedselelawpsrlgvlPe 262
                 +++ lg+++fl+gf++W+lD++fCs+++ +rr+ + lplgvllelHgwWH+ltg+g+y ++v+l+ylrv + g+ + +++++w  r++++Pe
  CCD25088.1 211 ATMGLGISLFLAGFIFWQLDVHFCSFWIGIRRKyLLLPLGVLLELHGWWHLLTGAGVYAYVVFLQYLRVLSLGELN-DFDFIW--RWKFCPE 299
                 *******************************8879****************************************7.89****..8999998 PP

>> Vma12  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.3      0.13   7.6e+02      87     119 ..      50      79 ..      31      86 .. 0.76
   2 ?   12.2   0.1   2.4e-05      0.14      80     127 ..     179     226 ..     121     232 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.13
       Vma12  87 vvavffavwialrsartpslpvrvllslvvall 119
                 v+a  ++++ a r+     ++  +l++l++al+
  CCD25088.1  50 VMAASYSIYCAYRNK---LEKRFILIGLGFALV 79 
                 556666667666666...566667889999986 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 2.4e-05
       Vma12  80 vlNiliSvvavffavwialrsartpslpvrvllslvvallVgvAEvvv 127
                 vl  ++ v++v ++++ia +++ tp+++  ++ +++ ++  ++A  ++
  CCD25088.1 179 VLYGFLNVLVVSTSGYIAYKNMQTPTTKRNLFATMGLGISLFLAGFIF 226
                 4555899**********************************9998776 PP

>> DUF2660  Protein of unknown function (DUF2660)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.4e-05      0.26      10      45 ..     121     151 ..     113     170 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.4e-05
     DUF2660  10 kknmlpatlnyiddsdavalkrkksevkklslkeki 45 
                 kkn      n+  d+++va + + se+kk+ lke++
  CCD25088.1 121 KKN-----ENNTSDGNSVAVNVNNSENKKIPLKEQL 151
                 444.....79***********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2417.11
//
Query:       CCD25089.1  [L=2096]
Description: hypothetical protein NDAI_0E02720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-77  260.9   0.3    2.7e-77  260.4   0.3    1.3  1  Sec16_C   Sec23-binding domain of Sec16
    0.00015   22.3   1.0     0.0015   19.1   0.0    3.2  3  Sec16     Vesicle coat trafficking protein Sec16 mid-region


Domain annotation for each model (and alignments):
>> Sec16_C  Sec23-binding domain of Sec16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.4   0.3   3.1e-81   2.7e-77       2     302 .]    1137    1424 ..    1136    1424 .. 0.95

  Alignments for each domain:
  == domain 1  score: 260.4 bits;  conditional E-value: 3.1e-81
                  HHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHH---..---TH....HHHHHHHHHTTT-HHHHHHHHHH...........-HH CS
     Sec16_C    2 qalLlrGdrekAlqlAldkklWahAlliasllgkelwkevvqefvrselk.egens....esLrvlyqvfaGnseeavdelvptsaraslqqaeesk 93  
                   ++L++G++++Alql+l+kk++a+All++sl gk++w+evvq+++++e++ +  ++    ++L++++q f+Gns+ a+d++++           +s+
  CCD25089.1 1137 LSCLQTGNHNAALQLSLEKKDYAMALLLGSLAGKNKWSEVVQQYLSQEFTaTAPEQnewaNLLSLIFQAFIGNSKMAMDKFYR-----------NSA 1222
                  679**********************************************85433335799***********************...........99* PP

                  HHHHHHHSHHHHHHHHHHTS.............--HH.HHHHHHHHHHHHHTT-HHHHHHHHHHT-SSS.............BSSTTS--B--SSS. CS
     Sec16_C   94 eaeealdkWretvalvlsnr.............spsd.seaLtalGdlLaskgrveaahicyllalsqtslfggldspsarlvllgadhvkfessf. 175 
                  + ++a+++W+++va+vl+n              +p   +e+L+++G +L +k + +aa+i++++a+             +  ++++++  +f +++ 
  CCD25089.1 1223 DGHWAINNWKQIVAAVLMNVnaendstpsntakMPLVvTEFLLEFGIFLKQKSQDLAASIVFMIARIPL----------SLSPVMPDTMFTFDTIGk 1309
                  *********************************99999***************************3333..........334899999999999999 PP

                  TTSHHHHHHHHHHHHHH.HT....TT----CCCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTS-TTSHHHHH.HHHHHHHHHHHT-XXX.... CS
     Sec16_C  176 akdlesilltEiyEfalslspaakekfaglphLlayKllhAavLaelGlvseAqkYcdaiaaslksltkkspylhptlleqlkdLserLseapkedk 272 
                  ++++es+l++E+yEf +s++    +kfag+p +l++K+ hA++L+e+G +s+A+kYcd+++++lk+++k + ++++ l+ +l dL++r+s+++    
  CCD25089.1 1310 SSTIESCLWSEVYEFSFSSA----PKFAGFPCILPQKMFHAYCLQEQGFISNASKYCDYLTNILKTQPKTDITVMN-LTLSLTDLTTRVSDSN---- 1397
                  999**************999....89**************************************************.9*************99.... PP

                  .XXX..XXXXXXXXXXXXXXXXXXXXXXXX CS
     Sec16_C  273 sssWlkiskpsldkvwgsleksfnkfvaGd 302 
                   ++W  ++kp+l +vwg+l+ksfn+f++Gd
  CCD25089.1 1398 -TGW--LTKPKLGSVWGQLDKSFNRFIGGD 1424
                  .79*..***********************9 PP

>> Sec16  Vesicle coat trafficking protein Sec16 mid-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2      0.95   8.5e+03      27      82 ..     290     346 ..     275     372 .. 0.64
   2 !   19.1   0.0   1.7e-07    0.0015       2      87 ..     996    1076 ..     995    1102 .. 0.79
   3 ?   -1.0   0.0      0.28   2.5e+03      55      87 ..    1161    1194 ..    1099    1216 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.95
       Sec16  27 svsssksspgevkirslkelvpssedask....fPGPlvkgkskkkevlkwLserieele 82 
                 +v + +s++  ++ ++l+   p  +d+++     +GPl      + +v kw ++++ +++
  CCD25089.1 290 AVVNPTSHESIIQQEHLTGAQPPPTDHQQqqgsLNGPL---PGFSPDVPKWTHSEVPDAQ 346
                 44555555556666666666666666665677799999...6677777777777665554 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 1.7e-07
       Sec16    2 pvvsFGfGGklvtmfPkrkpslsgssvsssksspgevkirslkelvpssedaskfPGPlvkgkskkkevlkwLserieeleaevay 87  
                  p++ +    k++   Pk++ s        s +s   ++i + ++ ++ +    +f GPl++gk++ k++ +wL++ i++l++++ +
  CCD25089.1  996 PIFHWTNSNKVLYGIPKNTGSNY-----GSGNSLECINIVNYESSIQPNLVLKSFVGPLINGKTRVKDLEAWLDNVIDDLSSKDPS 1076
                  66666666666666666665555.....35666778999999999999999999***************************99877 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.28
       Sec16   55 k.fPGPlvkgkskkke.vlkwLserieeleaevay 87  
                  +   G l +gk+k  e v ++Ls++ ++ + e+++
  CCD25089.1 1161 AlLLGSL-AGKNKWSEvVQQYLSQEFTATAPEQNE 1194
                  2566777.555555554999999999988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2096 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1233  (0.0687713); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.13u 0.28s 00:00:01.41 Elapsed: 00:00:00.46
# Mc/sec: 13707.25
//
Query:       CCD25090.1  [L=544]
Description: hypothetical protein NDAI_0E02730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.9e-33  113.5   0.0    1.8e-32  112.5   0.0    1.5  1  AAA              ATPase family associated with various cellul
    3.2e-08   33.9   0.0    8.1e-08   32.6   0.0    1.6  1  AAA_22           AAA domain
    7.2e-07   29.3   0.0    1.4e-06   28.3   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
    2.7e-06   27.9   0.3    3.4e-05   24.3   0.1    2.7  2  AAA_16           AAA ATPase domain
    4.5e-05   23.4   0.3     0.0013   18.6   0.0    2.9  3  RsgA_GTPase      RsgA GTPase
      5e-05   23.9   0.1    0.00032   21.2   0.0    2.4  2  AAA_18           AAA domain
    0.00016   21.5   0.2     0.0004   20.3   0.0    1.8  1  AAA_11           AAA domain
    0.00017   21.8   0.0    0.00038   20.6   0.0    1.7  1  AAA_33           AAA domain
    0.00019   22.0   0.1     0.0006   20.3   0.0    1.9  1  ABC_tran         ABC transporter
    0.00024   21.5   0.1    0.00092   19.6   0.1    1.9  1  AAA_19           AAA domain
    0.00026   21.1   0.1    0.00098   19.3   0.1    2.0  1  TAN              Telomere-length maintenance and DNA damage r
    0.00033   20.4   0.0    0.00065   19.5   0.0    1.5  1  AAA_30           AAA domain
    0.00044   20.2   0.4     0.0065   16.4   0.0    2.5  2  Rad17            Rad17 P-loop domain
    0.00046   20.1   0.2     0.0016   18.4   0.0    2.1  1  NACHT            NACHT domain
    0.00065   20.0   0.0     0.0024   18.2   0.0    2.1  1  RNA_helicase     RNA helicase
    0.00087   19.3   0.1     0.0035   17.4   0.1    2.1  1  AAA_14           AAA domain
     0.0016   18.2   0.0     0.0034   17.1   0.0    1.6  1  AAA_24           AAA domain
     0.0026   17.4   0.2      0.063   12.9   0.0    2.4  2  AAA_25           AAA domain
     0.0036   16.7   0.8       0.56    9.5   0.0    2.5  2  ATPase           KaiC
     0.0038   17.2   0.0     0.0081   16.2   0.0    1.5  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0054   16.9   0.1       0.02   15.0   0.0    2.0  1  AAA_2            AAA domain (Cdc48 subfamily)
     0.0061   15.8   0.1      0.032   13.5   0.0    2.1  3  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0073   16.7   0.3       0.14   12.5   0.0    3.0  2  AAA_17           AAA domain
     0.0078   16.0   0.0      0.016   14.9   0.0    1.5  1  IstB_IS21        IstB-like ATP binding protein
     0.0097   15.8   7.0      0.055   13.4   0.7    3.5  3  ATPase_2         ATPase domain predominantly from Archaea
  ------ inclusion threshold ------
      0.011   14.8   0.0       0.02   14.0   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
      0.013   14.4   0.1        2.7    6.7   0.1    2.2  2  Adeno_IVa2       Adenovirus IVa2 protein
      0.013   16.0   0.0      0.013   16.0   0.0    2.9  1  AAA_23           AAA domain
      0.013   15.5   0.3       0.19   11.8   0.0    2.8  3  ResIII           Type III restriction enzyme, res subunit
      0.019   14.9   0.5      0.057   13.3   0.0    2.0  2  NTPase_1         NTPase
      0.021   14.6   0.0      0.051   13.3   0.0    1.7  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.021   15.1   0.0      0.047   13.9   0.0    1.6  1  AAA_28           AAA domain
      0.029   13.8   0.1       0.19   11.1   0.0    2.2  2  TniB             Bacterial TniB protein
       0.03   14.1   0.1      0.084   12.6   0.0    1.7  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.043   13.5   0.0      0.081   12.6   0.0    1.5  1  Cytidylate_kin   Cytidylate kinase
      0.053   13.0   0.0       0.12   11.8   0.0    1.6  1  PhoH             PhoH-like protein
      0.053   13.0   0.1       0.18   11.3   0.0    1.9  1  AAA_7            P-loop containing dynein motor region
      0.058   12.7   0.1        0.2   11.0   0.0    1.9  1  FtsK_SpoIIIE     FtsK/SpoIIIE family
      0.063   13.4   0.0       0.22   11.6   0.0    2.0  1  Sigma54_activ_2  Sigma-54 interaction domain
      0.067   12.6   0.0       0.14   11.6   0.0    1.4  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.094   12.8   0.0       0.34   11.0   0.0    2.0  1  MMR_HSR1         50S ribosome-binding GTPase
       0.14   11.8   0.1       0.31   10.7   0.1    1.6  1  CopK             Copper resistance protein K
       0.14   11.6   1.5       0.46    9.9   0.0    2.4  3  KTI12            Chromatin associated protein KTI12
       0.15   12.4   0.6        4.5    7.6   0.0    3.0  2  U3snoRNP10       U3 small nucleolar RNA-associated protein 10
       0.16   11.7   0.0       0.36   10.6   0.0    1.6  1  AAA_29           P-loop containing region of AAA domain
       0.85    9.3   4.6       0.39   10.4   1.1    2.2  2  Endotoxin_N      delta endotoxin, N-terminal domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   0.0   4.7e-35   1.8e-32       1     131 [.     295     449 ..     295     450 .. 0.91

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 4.7e-35
                 EEEESSTTSSHHHHHHHHHHHHTHE...............EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS......TS.EEEEEETGGGHHHHH... CS
         AAA   1 vllyGppGtGKTllakavakelgve...............fleisgsellskyvgesekkirelfkeakeka......kp.silfiDEidalaksr... 74 
                 +l++GppGtGKT+l++a++++l ++               ++eis s+++s ++ges+k+i  lf+++++        +  ++++iDE++a+a+sr   
  CCD25090.1 295 LLIHGPPGTGKTTLCRALCQKLAIRngsdldnmdlvykciLVEISSSSIFSRWFGESAKNITTLFDDIEKLVreaekkDIfVCVLIDEVEAIASSRtdi 393
                 699******************96555666777777777779***************************77667777775679***************** PP

                 .TTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHHSTTSSEEEETT CS
         AAA  75 .sgseseeeervvnqLlteldgvkkkeskvivigatnrpdkldpallrgRfdrkieie 131
                  s+ses+++ rvvn+Llt+ld++k +++ +++++++n  d++d+a+l +R+d +++i+
  CCD25090.1 394 lSKSESTDGVRVVNALLTHLDKLKYYNN-FLLLATSNLLDNIDSAFL-DRADGIFHIG 449
                 *************************855.******************.*****99986 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   2.1e-10   8.1e-08       4     105 ..     291     389 ..     287     421 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 2.1e-10
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalrarav...ielliiDE 99 
                 t ++l+++G++GtGKTtl+r l ++l +++  +  + ++v+ ++ ++ ss++++++ + +         ++   l++ +e+ +r++ +    ++++iDE
  CCD25090.1 291 TNKLLLIHGPPGTGKTTLCRALCQKLAIRNGSDLDNMDLVYKCILVEISSSSIFSRWFGESA-------KNITTLFDDIEKLVREAEKkdiFVCVLIDE 382
                 6789**********************999888888888887777777777777666666666.......267778888888888888888899****** PP

      AAA_22 100 aqhlr.s 105
                 ++ +  s
  CCD25090.1 383 VEAIAsS 389
                 **99642 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   3.7e-09   1.4e-06       2     137 ..     295     441 ..     294     442 .. 0.80

  Alignments for each domain:
  == domain 1  score: 28.3 bits;  conditional E-value: 3.7e-09
                 EEEE--SSSSHHHHHHHGGGGB.........S--EEEEE--TT--HHHHH--B--.............--------G-SEEE...EESGGG--HHHHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.........nreveyvqltrdtteedlkgrreik...ngttslvd.splvraaregeilv...lDEveraesevlns 84 
                 +l+ GppGtgK++l + l++ l         n  ++y+ +   ++++ ++ r+  +   n tt + d  +lvr+a++++i+v   +DEve + s+ +++
  CCD25090.1 295 LLIHGPPGTGKTTLCRALCQKLairngsdldNMDLVYKCILVEISSSSIFSRWFGEsakNITTLFDDiEKLVREAEKKDIFVcvlIDEVEAIASSRTDI 393
                 6889*************************************************87788788888888457********99644449****777777777 PP

                 HHHHHHSSEEE..-SSSEEE---............-EEEEEESS--.-TT-TTHHHHTT CS
       AAA_5  85 Llslleerrllleeggelvkaknddller......frviatanpldrslnelspalrsR 137
                 L +     +    +g ++v+a  +  l +      f ++at+n ld    ++++a+++R
  CCD25090.1 394 LSK----SEST--DGVRVVNALLTH-LDKlkyynnFLLLATSNLLD----NIDSAFLDR 441
                 754....4444..444454444432.222344556***********....999999998 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       4.5   1.8e+03      72      91 ..     131     149 ..      37     213 .. 0.69
   2 !   24.3   0.1   8.7e-08   3.4e-05      25     155 ..     293     394 ..     285     418 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 4.5
      AAA_16  72 laqalareellrqlldeaes 91 
                  +++   e+l++q+++++++
  CCD25090.1 131 TVECV-SEDLVQQIASDDKK 149
                 33444.33555555555333 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 8.7e-08
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaeasrllell 123
                  l+l++G++G+GK++l r+l + l  +         d   +++ y    +++     l ++ +    + +++w  +  ++++            l++ +
  CCD25090.1 293 KLLLIHGPPGTGKTTLCRALCQKLAIR------NGSDLDNMDLVY----KCI-----LVEISSS---SIFSRWFGESAKNIT-----------TLFDDI 362
                 689******************988855......444444334333....333.....3334333...466777776666666...........777777 PP

      AAA_16 124 krllallsrderplvlvlDdlqwadeaslqll 155
                  +l++ +++++  + +++D+++ + ++  ++l
  CCD25090.1 363 EKLVREAEKKDIFVCVLIDEVEAIASSRTDIL 394
                 77777777766677777777777666666655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.2   4.6e+02      53      81 ..     201     229 ..     200     239 .. 0.87
   2 !   18.6   0.0   3.5e-06    0.0013      64     126 ..     257     319 ..     248     326 .. 0.89
   3 ?   -1.0   0.1       3.8   1.5e+03      33      80 ..     360     406 ..     351     429 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1.2
                  EE-GGG--HHHHHHHHHHHHHHTTSEEEE CS
  RsgA_GTPase  53 lnKiDlleeeeeleelkeelealgyevll 81 
                  + KiDl ++e++l+++ +e++a+++++  
   CCD25090.1 201 FDKIDLDDDEDTLRSIDQEISAINIPFSN 229
                  57*********************998765 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 3.5e-06
                  HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT---- CS
  RsgA_GTPase  64 eleelkeelealgyevllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpelelk 126
                  ++++ + +++++ ++v ++s+++ ++  e ++l+++k+ ++ G+ G GK+tL  al ++l ++
   CCD25090.1 257 DIKQRMFNYSTISLKVAKLSNQEAQHGYEDEQLMTNKLLLIHGPPGTGKTTLCRALCQKLAIR 319
                  48899999**************999999999*************************9987765 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.8
                  HHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEE CS
  RsgA_GTPase  33 nlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevl 80 
                  + +++++ +ae+k+i + +++  ++ + +++ ++ l++  ++ g++v+
   CCD25090.1 360 DDIEKLVREAEKKDIFVCVLIDEVEAIASSR-TDILSKSESTDGVRVV 406
                  5688899999999999999999999998888.5555555555555555 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1       4.3   1.7e+03      69     116 ..     102     149 ..      21     167 .. 0.59
   2 !   21.2   0.0   8.2e-07   0.00032       2      33 ..     296     331 ..     295     419 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 4.3
      AAA_18  69 s..aleegknlvidghlaeleseaakdikkvvLtaspeelleRlekRgye 116
                     + ++k   i++ +++l+ + +++ k + +++  e l + ++ ++++
  CCD25090.1 102 FhqYSNSPKEFNIEDGHVNLLLPLFVQ-K-ITVECVSEDLVQQIASDDKK 149
                 123334555555666666666666654.3.88888888887777776654 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 8.2e-07
      AAA_18   2 lltGtpGvGKttlakeLskrlgf....gvnlrdvak 33 
                 l+ G+pG+GKttl+++L ++l++        +d+++
  CCD25090.1 296 LIHGPPGTGKTTLCRALCQKLAIrngsDLDNMDLVY 331
                 689**************7777556665333333333 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     1e-06    0.0004      13      42 ..     288     317 ..     275     383 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1e-06
      AAA_11  13 alseseitliqGPPGtgKTktivellsqll 42 
                  l ++++ li+GPPGtgKT+   +l+++l+
  CCD25090.1 288 QLMTNKLLLIHGPPGTGKTTLCRALCQKLA 317
                 55667799******************9996 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   9.8e-07   0.00038       1      24 [.     294     317 ..     294     374 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 9.8e-07
      AAA_33   1 lvllvGlpGsGKstlaerllkklg 24 
                 l+l++G+pG+GK+tl + l++kl+
  CCD25090.1 294 LLLIHGPPGTGKTTLCRALCQKLA 317
                 6899*****************997 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.5e-06    0.0006      10      65 ..     291     359 ..     286     427 .. 0.67

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.5e-06
                 TTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..............B-HHHCCHCEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllkpteGeilldgkdlke..............qeleslrkeigvlp 65 
                  ++++ i G+ G+GK+tL+++l+++l   +G+  ld+ dl +              +   ++ k+i +l+
  CCD25090.1 291 TNKLLLIHGPPGTGKTTLCRALCQKLAIRNGSD-LDNMDLVYkcilveissssifsRWFGESAKNITTLF 359
                 678899*************************97.888887775544443333333233333344444444 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   2.4e-06   0.00092       8     124 ..     290     396 ..     285     406 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 2.4e-06
      AAA_19   8 lkekvllvtaGpGtGKTrvlkhivallvelggvkp...eeillvaftgrAakelrerlaalgaeatTiHrlalldfddlltealelleeaeeekklqee 103
                 +++k+ll+ ++pGtGKT++ ++ ++ l  ++g ++   + ++ + + + + + +  r   +g++a+ i  l    fdd+++   e     +e+k++   
  CCD25090.1 290 MTNKLLLIHGPPGTGKTTLCRALCQKLAIRNGSDLdnmDLVYKCILVEISSSSIFSRW--FGESAKNITTL----FDDIEKLVRE-----AEKKDI--- 374
                 67899********************999999888844433344445566666677777..67778888888....7777733333.....344444... PP

      AAA_19 104 e.llivDEfqdvdelqyrLlka 124
                 + ++++DE+  +      +l++
  CCD25090.1 375 FvCVLIDEVEAIASSRTDILSK 396
                 4488888888888777666665 PP

>> TAN  Telomere-length maintenance and DNA damage repair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   2.5e-06   0.00098      57     119 ..      23      80 ..      13     106 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.5e-06
         TAN  57 kEkeaylkkkkssttksaaasRLskaasalRllvekavsklkrktlkalldhitqll.pgpdge 119
                 kE+ +       ++++++  s+++  +++l++++e++++k+k++t++++   + +ll  g++g 
  CCD25090.1  23 KEQDTA------KNVQAKEGSKMQVFSDILKMAIERSLNKFKEETAENCAIKLNDLLaDGQQGM 80 
                 333333......344556677*****************************99999994333444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.7e-06   0.00065      14     120 ..     289     406 ..     277     408 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.7e-06
      AAA_30  14 ltsgdrvavltGpAGtGKttalkal.reaweaag.........grvigl..AptgkaAkvLaeelgieastiakllkrlk....grarlepg.tllivD 95 
                 l+++ ++ +++Gp+GtGKtt+ +al ++++ ++g         ++ i++  ++++      ++ +g  a++i  l +  +    + a+ ++   ++++D
  CCD25090.1 289 LMTN-KLLLIHGPPGTGKTTLCRALcQKLAIRNGsdldnmdlvYKCILVeiSSSSI----FSRWFGESAKNITTLFDDIEklvrE-AEKKDIfVCVLID 381
                 4444.399*****************5555555578888887775544430033333....4444444566666666555555432.2223334778888 PP

      AAA_30  96 Eagmvdtkqlaallkaaekagakvi 120
                 E+  ++++ ++ l k+ +++g++v+
  CCD25090.1 382 EVEAIASSRTDILSKSESTDGVRVV 406
                 8888888888888888777778776 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.86   3.4e+02       7      46 ..      51      91 ..      16     101 .. 0.70
   2 !   16.4   0.0   1.7e-05    0.0065      45      76 ..     292     323 ..     267     332 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.86
       Rad17  7 elWfekykPekaeelavhkkk.ieevkewlkadvLesrkkr 46
                e+ ++k+k e+ae+ a+  +  + + ++ ++ + L  +++r
  CCD25090.1 51 ERSLNKFKEETAENCAIKLNDlLADGQQGMEVKALSTEPQR 91
                44456777777777777655414566777777777666655 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.7e-05
       Rad17  45 kriLLisGPsGCgkstvvkvLskelgiklrew 76 
                 +++LLi GP+G gk+t  + L ++l+i+    
  CCD25090.1 292 NKLLLIHGPPGTGKTTLCRALCQKLAIRNGSD 323
                 46********************9999876555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.1e-06    0.0016       2      48 ..     294     341 ..     293     429 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.1e-06
                 CEEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC.-SEEEEEETTTTTTS CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawaegklpqga.fklvFflslrelsrs 48 
                 l++++G++G GKTtL + l++++a ++      ++lv+   l e+s s
  CCD25090.1 294 LLLIHGPPGTGKTTLCRALCQKLAIRNGSDLDnMDLVYKCILVEISSS 341
                 689********************9776554444777776666666555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   6.2e-06    0.0024       2      26 ..     296     320 ..     295     385 .. 0.73

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 6.2e-06
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   +++Gp+g+GK+tl++ L+++l+ + 
    CCD25090.1 296 LIHGPPGTGKTTLCRALCQKLAIRN 320
                   79******************99433 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   9.1e-06    0.0035       2      83 ..     292     393 ..     291     442 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.1e-06
      AAA_14   2 rkilvitGaRrvGKTtllkqlikell....................vkkesilyinldderdkkladpekllelileklkeekktylflDEiqevpewe 80 
                 +k+l+i G+  +GKTtl++ l ++l                     ++++si+   + +  +   + ++++++l++e  k++   ++++DE+  + + +
  CCD25090.1 292 NKLLLIHGPPGTGKTTLCRALCQKLAirngsdldnmdlvykcilveISSSSIFSRWFGESAKNITTLFDDIEKLVREAEKKDIFVCVLIDEVEAIASSR 390
                 7999******************99998777776555554444443333333333333333333333455666666665433445679999999985544 PP

      AAA_14  81 kal 83 
                 + +
  CCD25090.1 391 TDI 393
                 444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.6e-06    0.0034       4      79 ..     294     388 ..     291     427 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 8.6e-06
      AAA_24   4 kiliyGpsgiGKTtlakelgpkplfi....dtekGlksldadkfpdie..............swedfldevvel...aaeladyktlviDtidelee 79 
                  +li Gp+g+GKTtl++ l  + l i    d+++ ++ ++   +++i+              +++++ d++++l   a++++ +  + iD ++ + +
  CCD25090.1 294 LLLIHGPPGTGKTTLCRAL-CQKLAIrngsDLDN-MDLVYKCILVEISsssifsrwfgesakNITTLFDDIEKLvreAEKKDIFVCVLIDEVEAIAS 388
                 579****************.77777767777777.66666666666778888888888877777777777777799888888899999999988755 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00016     0.063      31      59 ..     290     320 ..     274     334 .. 0.82
   2 ?    1.6   0.1      0.46   1.8e+02     125     168 ..     357     409 ..     342     425 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00016
      AAA_25  31 pagelallaGapgtGKttlaldlalava..t 59 
                   ++l l+ G+pgtGKttl+  l+ ++a   
  CCD25090.1 290 MTNKLLLIHGPPGTGKTTLCRALCQKLAirN 320
                 568899**************99998877544 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.46
      AAA_25 125 lltadvdaleaaieeveg.vrlvviDplsralgg..densnsd.......vgal 168
                 +l  d+++l +++e+ ++  + v iD + ++ +   d  s+s+       v+al
  CCD25090.1 357 TLFDDIEKLVREAEK-KDiFVCVLIDEVEAIASSrtDILSKSEstdgvrvVNAL 409
                 344566666666666.568999*****999777767444444432333322444 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0014      0.56      17      37 ..     290     310 ..     282     321 .. 0.86
   2 ?    5.1   0.1     0.032        12      71     135 ..     321     389 ..     311     400 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0014
      ATPase  17 pegrvvlitGepGtGKtifal 37 
                 + ++  li G pGtGKt+++ 
  CCD25090.1 290 MTNKLLLIHGPPGTGKTTLCR 310
                 678899************986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.032
      ATPase  71 Gwdlekleeegklaiidasesaeesaee.kdkedleelieelaeaikeika....krvviDsitglayee 135
                 G dl+++    k +++++s+s++ s    ++ +++  l +++++ ++e +      +v+iD ++++  ++
  CCD25090.1 321 GSDLDNMDLVYKCILVEISSSSIFSRWFgESAKNITTLFDDIEKLVREAEKkdifVCVLIDEVEAI-ASS 389
                 66777777777788888888887644338999****************999444447899***999.333 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.1e-05    0.0081      18      45 ..     290     318 ..     272     323 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.1e-05
                 H.TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  18 l.gdvilLeGdLGaGKTtlvrglakalgv 45 
                 + ++++l++G+ G+GKTtl+r+l+++l +
  CCD25090.1 290 MtNKLLLIHGPPGTGKTTLCRALCQKLAI 318
                 247789*******************9987 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.1e-05      0.02       7     104 ..     296     414 ..     292     429 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.1e-05
                 EEE--TTSSHHHHHHHHHHHTT-.............-EEEEEGGG---.....----THHHHHHHHHTTT-HHHHTTS...EEEEETGGG----....- CS
       AAA_2   7 lllgptgvGktelakalaellfv.........kkekkliradaselle.....eeevehlvsrligappgyvgaeegG...ivllDEidKihpk....e 84 
                 l+ gp g+Gkt l +al + l +         +   k i ++ s+        +e ++++ + +   ++   +ae++     vl+DE++ i+++     
  CCD25090.1 296 LIHGPPGTGKTTLCRALCQKLAIrngsdldnmDLVYKCILVEISSSSIfsrwfGESAKNITTLFDDIEKLVREAEKKDifvCVLIDEVEAIASSrtdiL 394
                 789******************9988777766644444444444444446689666666655555555555555555558888***********766332 PP

                 --------HHHHHHHHHHHH CS
       AAA_2  85 ssgadvSregVqrdLLqile 104
                 s+++   +  V+++LL  l+
  CCD25090.1 395 SKSESTDGVRVVNALLTHLD 414
                 33333333345677776665 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       3.4   1.3e+03     180     212 ..      17      49 ..      11      69 .. 0.66
   2 ?   -2.0   0.0         4   1.6e+03     151     205 ..     127     182 ..      72     192 .. 0.72
   3 !   13.5   0.0   8.2e-05     0.032       2      99 ..     293     385 ..     292     405 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.4
     DUF2075 180 vdalldgkkekakplssqenfdirvfddleelk 212
                 v++ + +++++ak+ +++e+ +++vf+d+ ++ 
  CCD25090.1  17 VQDNILKEQDTAKNVQAKEGSKMQVFSDILKMA 49 
                 554444555555555568888999999887764 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4
     DUF2075 151 akkleveleekvhLksqfRvaaseaviewvdalldgkkekakplss..qenfdirvf 205
                 ++k+ ve++++ +L +q+ ++ ++ +++ + ++l++k+ ++k+ ++  ++ + i++f
  CCD25090.1 127 VQKITVECVSE-DLVQQIASDDKKPLHDEILDILTKKEPNNKTYNKnqNRTYGIHLF 182
                 45666666666.899999998888888888888887776666655555778888877 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 8.2e-05
     DUF2075   2 avvlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlv.lrealakke.ekkkkkeafeklssfinnlsefkkaeekkeepkedvvivDEAh 98 
                 +++l++G +GtGKt +  +l  +l    ++ +    + N +lv + +  ++++++  ++ ++e++++ +++  +++  k   e ++++ + +v++DE  
  CCD25090.1 293 KLLLIHGPPGTGKTTLCRALCQKL--AIRNGS---DLDNMDLVYKcILVEISSSSiFSRWFGESAKNITTLFDDIE--KLVREAEKKDIFVCVLIDEVE 384
                 689********************9..333322...24555555431344455555566778888888888888888..666666677888889999965 PP

     DUF2075  99 r 99 
                  
  CCD25090.1 385 A 385
                 5 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       2.8   1.1e+03      16      66 ..     174     221 ..     167     232 .. 0.72
   2 !   12.5   0.0   0.00037      0.14       2      21 ..     299     318 ..     298     324 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 2.8
                 HHHHTEEEEEHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHH CS
      AAA_17  16 vekygfthlsaGdllreeakrgglakardemrklpleekkelqkeaaekia 66 
                  + yg++ + ++ l +e  +  gl+++   ++k +l++++++++ + ++i 
  CCD25090.1 174 NRTYGIHLFYYSPLEMEKRSAFGLSED---FDKIDLDDDEDTLRSIDQEIS 221
                 577888888888888888888899655...555677777777777777664 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00037
                 E-TTSSHHHHHHHHHHHHTE CS
      AAA_17   2 GgPGsGKgtqceklvekygf 21 
                 G+PG GK+t+c+ l +k+ +
  CCD25090.1 299 GPPGTGKTTLCRALCQKLAI 318
                 9***************9865 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.2e-05     0.016      44      76 ..     289     322 ..     267     330 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.2e-05
   IstB_IS21  44 iekkenivllGpsGvGKshlaialgve.avragl 76 
                 + +++ +++ Gp+G+GK+ l  al ++ a+r+g 
  CCD25090.1 289 LMTNKLLLIHGPPGTGKTTLCRALCQKlAIRNGS 322
                 56677899*****************985677775 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       6.2   2.4e+03     180     180 ..      73      73 ..      19     113 .. 0.51
   2 ?   -0.2   0.1         2   7.9e+02      44      83 ..     174     224 ..     167     259 .. 0.70
   3 !   13.4   0.7   0.00014     0.055      19     137 ..     291     401 ..     287     441 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 6.2
    ATPase_2 180 l 180
                 l
  CCD25090.1  73 L 73 
                 1 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 2
    ATPase_2  44 ledkdkyviyyialreesiskldefie........eeeekkklekal...g 83 
                  + ++ + +yy++l+ e+ s +  + +        +e+  +++++ +   +
  CCD25090.1 174 NRTYGIHLFYYSPLEMEKRSAFGLSEDfdkidlddDEDTLRSIDQEIsaiN 224
                 467788999******999999888744666666555555555555554443 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 0.00014
    ATPase_2  19 pneiyfiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefieeeeekkklekalgiavpkaeleeilkeksklvfkaielllekikkkg 117
                 +n+ ++i Gp g GKt+L + + ++l             ++++++++d      ++   l +  ++ + +      + e  k+++  ++++ + +++  
  CCD25090.1 291 TNKLLLIHGPPGTGKTTLCRALCQKLAIR----------NGSDLDNMDLV----YKCI-LVEISSSSIFSRW----FGESAKNITTLFDDIEKLVREAE 370
                 688999****************9999433..........33444444444....2222.2222222222222....22334444555555555555555 PP

    ATPase_2 118 kk...iiiiiDelqklidlgln........g 137
                 kk   + ++iDe+  + +   +         
  CCD25090.1 371 KKdifVCVLIDEVEAIASSRTDilsksestD 401
                 5555599999999998854444555555544 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     5e-05      0.02      99     154 ..     266     317 ..     233     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5e-05
       T2SSE  99 sakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkein 154
                 s+ +l++++l+ +ea++   +e l +     +l+l+ G+ g+GKttl  al ++++
  CCD25090.1 266 STISLKVAKLSNQEAQHGYEDEQLMTN----KLLLIHGPPGTGKTTLCRALCQKLA 317
                 556677888888888888888888777....9******************999876 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0068       2.7     237     341 ..      13     115 ..       8     131 .. 0.82
   2 ?    5.5   0.0     0.016       6.4      89     108 ..     294     313 ..     219     320 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0068
  Adeno_IVa2 237 svlvvlhnlnPrsdiagniadlkiqaklhilsskiapfqlarfvntyakglskdlavllkaifefleqksrysfilynvePvrealrWc..lldqrdsl 333
                 ++ +v  n+   +d+a n++  k  +k+ ++s  i ++ ++r +n + ++ +++ a+ l++++   + ++  +    ++eP+r  ++    +l +++s 
  CCD25090.1  13 TIKIVQDNILKEQDTAKNVQ-AKEGSKMQVFS-DILKMAIERSLNKFKEETAENCAIKLNDLLA--DGQQGMEVKALSTEPQRRIIESLfkVLFHQYSN 107
                 56789999*9********96.5999****998.577899************************9..666777777888999987766443366777777 PP

  Adeno_IVa2 334 iPlslniq 341
                  P + ni 
  CCD25090.1 108 SPKEFNIE 115
                 77777776 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.016
  Adeno_IVa2  89 iGviyGPtGsGksqllrnli 108
                 + +i+GP G+Gk+ l r+l 
  CCD25090.1 294 LLLIHGPPGTGKTTLCRALC 313
                 3479**************96 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.0   0.0   3.3e-05     0.013      19      41 ..     292     314 ..     281     326 .. 0.89

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.3e-05
      AAA_23  19 kgltlItGpNGaGKTTildAikl 41 
                 ++l lI+Gp G+GKTT+ +A++ 
  CCD25090.1 292 NKLLLIHGPPGTGKTTLCRALCQ 314
                 6899*****************95 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       3.6   1.4e+03      63     122 ..     136     199 ..     117     221 .. 0.72
   2 ?   11.8   0.0   0.00047      0.19      23      96 ..     291     373 ..     266     409 .. 0.75
   3 ?   -1.5   0.0       5.6   2.2e+03      43      66 ..     408     431 ..     404     453 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 3.6
                 SHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH........ CS
      ResIII  63 rkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee....e 122
                 +++l++q  ++ kk l+++  +i +k++ ++k+ +++++ +  i+++ ++ l  +++++    e
  CCD25090.1 136 SEDLVQQIASDDKKPLHDEILDILTKKEPNNKTYNKNQNRTYGIHLFYYSPLEMEKRSAfglsE 199
                 5677888888888888888777777777777777778888888888888888777755555551 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00047
                 TTSEEEEEESTTSTHHHHHHHHHHHH-S.............-EEEE.ESSHHHHHHHHHHGGGGTGG....GEEEESSS-B-- CS
      ResIII  23 rdkrglikmaTGtGKTlvaaklierllkkgkee........kflfl.vprkslleqtleefkkflseaykeigkkvsgdkkka 96 
                  +k +li+ + GtGKT ++ +l+++l+  ++ +        k++++ + + s+ +++  e +k + + +++i+k v++ +kk 
  CCD25090.1 291 TNKLLLIHGPPGTGKTTLCRALCQKLAIRNGSDldnmdlvyKCILVeISSSSIFSRWFGESAKNITTLFDDIEKLVREAEKKD 373
                 567788******************99998887799999999555553778899999999999888888888888887777666 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 5.6
                 HHHHHH-S.....-EEEEESSHHH CS
      ResIII  43 klierllkkgkeekflflvprksl 66 
                 +l  +l k +++++fl+l+ ++ l
  CCD25090.1 408 ALLTHLDKLKYYNNFLLLATSNLL 431
                 566778888888899999977644 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   0.00015     0.057       3      25 ..     296     318 ..     294     322 .. 0.88
   2 ?   -2.3   0.1       9.6   3.7e+03      90     104 ..     366     383 ..     355     405 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00015
                 EEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1   3 fiTGppGvGKtTlvkkvlellks 25 
                 +i GppG+GKtTl++ ++++l+ 
  CCD25090.1 296 LIHGPPGTGKTTLCRALCQKLAI 318
                 789****************9975 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 9.6
                 HHHHHHH-...EEEE--- CS
    NTPase_1  90 rkalsead...viviDEi 104
                  ++ +++d   +++iDE+
  CCD25090.1 366 VREAEKKDifvCVLIDEV 383
                 344466675544457776 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   0.00013     0.051       2      23 ..     296     325 ..     295     388 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.00013
  Viral_helicase1   2 vvhGvpGcGKStlirkllrts........l 23 
                      ++hG pG GK+tl+r l+++          
       CCD25090.1 296 LIHGPPGTGKTTLCRALCQKLairngsdlD 325
                      89***************9985544444440 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   0.00012     0.047       3      21 ..     296     314 ..     294     350 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00012
      AAA_28   3 vitGgestGKTtlleaLaa 21 
                  i G+++tGKTtl++aL +
  CCD25090.1 296 LIHGPPGTGKTTLCRALCQ 314
                 689*************965 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       1.9   7.4e+02      76     111 ..     141     176 ..     138     181 .. 0.79
   2 ?   11.1   0.0   0.00049      0.19      29      89 ..     284     346 ..     259     396 .. 0.68

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.9
        TniB  76 qappkpdekrlyaaiLealgaplkararvskleqqv 111
                 q   + d+k l ++iL+ l ++  ++++ +k ++++
  CCD25090.1 141 QQIASDDKKPLHDEILDILTKKEPNNKTYNKNQNRT 176
                 5556778999**********9988888887777765 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00049
        TniB  29 ypkrkrm..pnlllvGdsnnGKtmivekFarlhppekdedaekvpvlvvqappkpdekrlyaa 89 
                 y +++ m  + ll++G++ +GKt++++  +++   ++ +d +++++++  +  + + + ++++
  CCD25090.1 284 YEDEQLMtnKLLLIHGPPGTGKTTLCRALCQKLAIRNGSDLDNMDLVYKCILVEISSSSIFSR 346
                 44555552255899****************999999988888888887666666555555555 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00022     0.084      36      58 ..     295     317 ..     281     343 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00022
      RuvB_N  36 vllyGpPGlGkttlakiiakelg 58 
                 +l++GpPG Gkttl++ ++++l 
  CCD25090.1 295 LLIHGPPGTGKTTLCRALCQKLA 317
                 6899***********99998875 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   0.00021     0.081       3      25 ..     297     319 ..     295     389 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00021
                     EE-STTSSHHHHHHHHHHHHT-E CS
  Cytidylate_kin   3 iDGPagsGKssvaralaeklglk 25 
                     i GP g+GK +++ral +kl ++
      CCD25090.1 297 IHGPPGTGKTTLCRALCQKLAIR 319
                     88*****************9875 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00032      0.12       8      40 ..     280     313 ..     274     324 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00032
                 HHHHHH.HHHHH-SEEEEE--TTSSTTHHHHHHH CS
        PhoH   8 eQkeyl.ealkkndivfaiGpaGtGKtylavala 40 
                 +Q+ y  e+l++n+++ + Gp GtGKt l  al 
  CCD25090.1 280 AQHGYEdEQLMTNKLLLIHGPPGTGKTTLCRALC 313
                 56666514788*****************987765 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00046      0.18      30      58 ..     289     317 ..     279     325 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00046
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkld 58 
                 l  +k +l+ Gp GtGKt++++ l++kl 
  CCD25090.1 289 LMTNKLLLIHGPPGTGKTTLCRALCQKLA 317
                 4567889****************999986 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0005       0.2      33      66 ..     285     319 ..     254     323 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0005
                   EEGGGS-..SEEEE--TTSSHHHHHHHHHHHHHTT CS
  FtsK_SpoIIIE  33 ldlkkma.shllvaGatgsGKStalntLilSlatt 66 
                    d++ m+   ll++G +g+GK+t  ++L + la +
    CCD25090.1 285 EDEQLMTnKLLLIHGPPGTGKTTLCRALCQKLAIR 319
                   455555534589*****************999986 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00057      0.22      24      87 ..     295     371 ..     287     422 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00057
                      EEEEEETT--HHHHHHCC--TTS..-EE--SSTTHHHH-H..........HHHH.HHTTTSEEEEEE-TT--HHHHH CS
  Sigma54_activ_2  24 vfltGekGsgkelvArlLhknsg..pwleifvverlaklp..........ldll.eqakggtLylkdiadlskaeqk 87 
                      +++ G++G+gk++  r+L+++ +  + +++ +++   k            ++++ e+ak+ t ++ di++l +++ k
       CCD25090.1 295 LLIHGPPGTGKTTLCRALCQKLAirNGSDLDNMDLVYKCIlveissssifSRWFgESAKNITTLFDDIEKLVREAEK 371
                      89****************99743112355555543333112334454444555534499**********99887655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00035      0.14      25      50 ..     295     320 ..     289     357 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00035
  Mg_chelatase  25 lllvGppGsGKtmlakrlpsllppls 50 
                   ll+ GppG+GKt l ++l + l+  +
    CCD25090.1 295 LLIHGPPGTGKTTLCRALCQKLAIRN 320
                   7899*************988776555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00088      0.34       3      25 ..     296     318 ..     294     328 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00088
                 EEEESTTSSHHHHHHHHHTSTEE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgekai 25 
                 +i G p +GK+tL +al+++ ai
  CCD25090.1 296 LIHGPPGTGKTTLCRALCQKLAI 318
                 688***************99665 PP

>> CopK  Copper resistance protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00079      0.31       3      31 ..      25      54 ..      23      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00079
                TSEEEEEEBTTSEEEEEETTS.-EEEEETT CS
        CopK  3 aavkksveLkdGstlyifkDG.KmamEdkl 31
                ++  k v+ k+Gs++ +f D  Kma+E  l
  CCD25090.1 25 QDTAKNVQAKEGSKMQVFSDIlKMAIERSL 54
                677899**************55****9765 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       5.1     2e+03     198     220 ..      12      35 ..       7     112 .. 0.62
   2 ?   -0.8   0.1       2.1   8.1e+02     153     187 ..     143     174 ..     127     181 .. 0.78
   3 ?    9.9   0.0    0.0012      0.46       3      89 ..     294     393 ..     293     422 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 5.1
                 HHHHHHH.HHHH....HTT--HHH CS
       KTI12 198 etseivk.eileaqksavaidklt 220
                 +t +iv+ +il++q +a++ +  +
  CCD25090.1  12 CTIKIVQdNILKEQDTAKNVQAKE 35 
                 444444313444444444444333 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 2.1
                 EE.TTS---HHHHHHHHHHHHTS--SSSTT----- CS
       KTI12 153 vlsaeeklpldeilkaliekkklkpnqatlskpla 187
                 + s+++k  +deil+ l +k+   pn++t++k+++
  CCD25090.1 143 IASDDKKPLHDEILDILTKKE---PNNKTYNKNQN 174
                 556888899999999998776...77777776655 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0012
                 EEEEE--TTSSHHHHHHHHHHHHHH..........TT--EEEE-THHHH.TTSSS--GG.GHHHHHHHHHHHHHHHHTT.SE..EEE-S---SHHHHHH CS
       KTI12   3 LvvltGlPssGKstrakeLakalee..........ekrsvvviddeslgiekdsykdsa.kekalRsslrsavkrdLskekv..VIvDslnyikgfRYe 88 
                 L+++ G P +GK+t+ + L ++l+             +++++++  s  i +  + +sa +  +l +++ + v+++ +k+ +  V +D++  i + R +
  CCD25090.1 294 LLLIHGPPGTGKTTLCRALCQKLAIrngsdldnmdLVYKCILVEISSSSIFSRWFGESAkNITTLFDDIEKLVREAEKKDIFvcVLIDEVEAIASSRTD 392
                 899********************9877888877666677777776666666666665540445555666666655555544322456777777777766 PP

                 H CS
       KTI12  89 L 89 
                 +
  CCD25090.1 393 I 393
                 6 PP

>> U3snoRNP10  U3 small nucleolar RNA-associated protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       1.1   4.2e+02      40      88 ..      87     145 ..      36     170 .. 0.57
   2 ?    7.6   0.0     0.012       4.5      23      67 ..     468     513 ..     457     533 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHH--.GGGHHHH........HHHHHHHHHT-S.S-S--HHHHHHHTT CS
  U3snoRNP10  40 dkvleallesilknls.kelaksa........llcllvlaqsqs.akllpkkvlkallk 88 
                  +  + ++es+ k l  + + +++        + +ll l+ ++  ++ +++++++++ +
  CCD25090.1  87 TEPQRRIIESLFKVLFhQYSNSPKefniedghVNLLLPLFVQKItVECVSEDLVQQIAS 145
                 33344455555555442333333355566666666666664442122255555555555 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.012
                 HHHHHHHHHHHHTT-S-HHHHHHHHHHHHHH--GGGHHHH.HHHHH CS
  U3snoRNP10  23 aaaymilsvLaskvpLsdkvleallesilknlskelaksa.llcll 67 
                 ++a +i+++ + +  L++++ + ++ +i+kn +  ++++  llcl+
  CCD25090.1 468 ISAGIIIGYKSYRYILNSEIYKDIICTIAKNANGRTLRKIpLLCLS 513
                 67889**************************996665555588886 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00092      0.36      14      41 ..     283     311 ..     270     317 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00092
      AAA_29  14 g.htieidlkgatlltGpsGsGKSTllDA 41 
                 g ++ ++ ++   l+ Gp G+GK+Tl  A
  CCD25090.1 283 GyEDEQLMTNKLLLIHGPPGTGKTTLCRA 311
                 4333444444689************9766 PP

>> Endotoxin_N  delta endotoxin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.1   0.00099      0.39      38     132 ..      39     131 ..      16     172 .. 0.88
   2 ?   -1.2   0.1       3.5   1.4e+03      11      53 ..     447     491 ..     444     503 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00099
  Endotoxin_N  38 vnsyrkeiqdlidnsltqyddnklkallkglslslkdfrk..evknlkadPknaalksavnvlylnlendietkylkdlrkegyeieelplfvlmAt 132
                  ++++ + ++ +i++sl+++++ + ++   +l+  l+d ++  evk l ++P+   + s ++vl+ +  n+ + + ++d    g+    lplfv+  t
   CCD25090.1  39 MQVFSDILKMAIERSLNKFKEETAENCAIKLNDLLADGQQgmEVKALSTEPQRRIIESLFKVLFHQYSNSPKEFNIED----GHVNLLLPLFVQKIT 131
                  4566688999***************************9975589***************************9999999....677777899988766 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.5
  Endotoxin_N  11 evGgvlsf.ivdliftylie.edksiaelvnsyrkeiqdlidnsl 53 
                  ++G+++   i+ +++t + e     i+  ++syr  ++  i + +
   CCD25090.1 447 HIGNPVEEaITKILWTSIGElISAGIIIGYKSYRYILNSEIYKDI 491
                  578877655999999999998777788889999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              46  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 3700.67
//
Query:       CCD25091.1  [L=1860]
Description: hypothetical protein NDAI_0E02740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   5.2e-119  398.3   0.4   4.6e-118  395.2   0.4    2.7  3  DUF3535        Domain of unknown function (DUF3535)
    2.5e-68  230.3   0.0    4.9e-68  229.4   0.0    1.4  1  SNF2_N         SNF2 family N-terminal domain
    5.7e-19   68.5   0.0    2.3e-18   66.5   0.0    2.1  1  Helicase_C     Helicase conserved C-terminal domain
    4.7e-15   54.4   0.9       0.74   10.2   0.0    8.2  7  HEAT           HEAT repeat
    1.6e-09   38.1   1.3       0.82   10.2   0.0    7.9  8  HEAT_EZ        HEAT-like repeat
    3.9e-06   27.0   0.0    2.3e-05   24.5   0.0    2.4  2  ResIII         Type III restriction enzyme, res subunit
    8.2e-06   26.3   0.2        4.9    7.8   0.0    5.2  4  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    1.2e-05   25.5   0.0        6.1    7.2   0.0    5.8  5  TAF6_C         TAF6 C-terminal HEAT repeat domain
    6.3e-05   23.3   0.4        4.6    7.7   0.0    5.1  3  HEAT_2         HEAT repeats
     0.0054   16.6   3.6         20    5.2   0.0    5.5  5  UME            UME (NUC010) domain
     0.0081   16.1   0.2       0.42   10.6   0.0    2.9  2  GUN4_N         ARM-like repeat domain, GUN4-N terminal
  ------ inclusion threshold ------
      0.021   14.0   0.0       0.05   12.8   0.0    1.6  1  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
      0.066   13.0   0.1       0.25   11.1   0.1    2.0  1  Dna2           DNA replication factor Dna2
        0.1   11.9   0.1       0.22   10.8   0.1    1.5  1  Pkinase_Tyr    Protein tyrosine kinase
       0.92    9.4   6.3          2    8.3   0.5    3.7  3  Sec7_N         Guanine nucleotide exchange factor in Golgi tr


Domain annotation for each model (and alignments):
>> DUF3535  Domain of unknown function (DUF3535)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         2   2.4e+03     108     125 ..      59      80 ..      53      91 .. 0.77
   2 ?   -2.4   0.0       1.8   2.1e+03     103     126 ..     359     385 ..     289     402 .. 0.56
   3 !  395.2   0.4  3.9e-121  4.6e-118       1     434 [.     604    1055 ..     604    1056 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2
     DUF3535 108 raRiaaakaLGlllsyl....p 125
                 ++R++aa+a G ++s+     p
  CCD25091.1  59 ETRVTAARAVGGIVSHAplwdP 80 
                 69*********99998844442 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.8
     DUF3535 103 e...anviraRiaaakaLGlllsylpe 126
                     ++v   R +aa+ L++ll +l++
  CCD25091.1 359 YvydTVVAPVRESAAQTLAALLLHLDD 385
                 144446777788888888888777754 PP

  == domain 3  score: 395.2 bits;  conditional E-value: 3.9e-121
     DUF3535    1 VWenLvrea....sleallhaacphlsswlcLamtPigv.....pldpslllkpsgqaksssekkkkkeeeasskrkrskkkaeakgekasasshnv 88  
                  V+++L++++    ++++l+h +++hl+++l+L+ tPig      +++++++lkps++++ ++ekk++ +e         +++++ +  k  ++  n+
  CCD25091.1  604 VYTELLSHYkskhTEKTLDHVFSKHLQPILHLLNTPIGEngknySMEAQYILKPSQHYQLHPEKKRSITEA--------TQESSIPPPKYAER-INI 691 
                  89********99999*******************************************9997554433333........34445555555666.9** PP

     DUF3535   89 dkeyiggdetlvgeeanviraRiaaakaLGlllsylpeespldcytkvLlghLnsksalqrlvaalvieewakedkkekkevstlpetlqeklleiL 185 
                  d+++i+gd+tl+g+e ++i++R++aaka+G++l+++++++ +++++kvL+++L+ ++a++rl+aa+++++++k++ + ++e+++lp+ +++ + +iL
  CCD25091.1  692 DAPMIAGDITLLGPE-VIINTRVLAAKAFGITLAMFQDSTLQSFFEKVLVRCLELAFATPRLFAAIILTQFCKSWLEYHTEQTQLPPFVSTIFGDIL 787 
                  ***************.***********************************************************8878888999999999999999 PP

     DUF3535  186 eee.....epvyYdElalsltrlrqecqdllatlesvg.....klpklavvvqgeae...kaftleqaeklvttdyekllkslslkqkllaekqLee 269 
                  +++     + ++++El+++l++lr++cq+ll+t+++vg     klp +a+vvqge+e   +af +++aek+ +++yek++k++ +++klla+k Le+
  CCD25091.1  788 NDQlsfpeKLPTFRELVPCLRALRTQCQSLLTTFVDVGmlsqhKLPGIAIVVQGETEagpQAFGIATAEKVHNEYYEKMFKAMGNSYKLLAKKPLED 884 
                  988888888899************************************************************************************* PP

     DUF3535  270 rrrrlqaaieeakeeqealhvrvqaalAgAlvalkelPkKLnpvikpLMeSiKkEeneeLQqrsAkalakLielcvdr.kpcpndKIvkNLctflcs 365 
                  +r r+   +e++ke  + +++++++++A+Al+ +k++PkKLnp+i++LMeS+K+E+n++LQ ++ +a+++Li+++ ++ k+ +++KIvkNLc+flc+
  CCD25091.1  885 ARYRVALGLEATKESMKGRTCSIMSSYAAALLLIKGIPKKLNPIIRALMESVKEEKNKKLQMMAGDAIIHLIDELLKNnKSAVANKIVKNLCGFLCV 981 
                  *****************************************************************************999***************** PP

     DUF3535  366 DtsetPef.....kkegIltlkkeedkaeaadaaeeeeeakeariqrrGAelaLetlakkFgasLfekvPkLwe 434 
                  Dtse+P f     + + Iltl ke d+ + +d+ + ++ a++a+++r G  ++L++l++ Fg+  +e++P+L++
  CCD25091.1  982 DTSEVPDFhsniqYSDRILTLIKEDDSLKIQDDIALKKLAESAQLKRDGGVYTLSKLLQIFGKFTLEQIPQLKD 1055
                  ************99****************999999999999******************************97 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.4   0.0   4.1e-71   4.9e-68      55     350 .]    1284    1574 ..    1269    1574 .. 0.86

  Alignments for each domain:
  == domain 1  score: 229.4 bits;  conditional E-value: 4.1e-71
                  T--EEE---TTS--HHHHHHHHH...HHTTTS---........S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH---------------- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N   55 vrGGiLaDemGLGKTvqvlalilaqrakeekdkek.krkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkllady 150 
                     GiL+D+mGLGKT+q++++i+  ++ +++d ek + ++t++ p Liv+P sl  +Wene+e++ +  ++ v+++g +       +  ++  l  +
  CCD25091.1 1284 GLHGILCDDMGLGKTLQTICIIASDQYLRQEDYEKtHSVETRKLPSLIVCPPSLTGHWENEFEQYSPFLKTIVYAGGPSA------RIPLRSHLDSA 1374
                  567********************99998888877769999*****************************99888888764......45567999*** PP

                  -EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  151 dvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqr 247 
                  d+vit+Ydv +++       + l + + ++ vlDEgh +kn +sk+a+av++L++++r+iltGTPiqn++ +l++L++fL+++ +g+ ++f++++ +
  CCD25091.1 1375 DIVITSYDVARNDL------QILGKYDYNYCVLDEGHIIKNAQSKLAKAVKQLRANHRLILTGTPIQNNVVELWSLFDFLMPGFLGTEKMFQERFAK 1465
                  ***********999......9**************************************************************************** PP

                  HHH.........HHHHHHH...HHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH- CS
                  xxx.........xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  248 pie.........aqaekgr...srLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskek 332 
                  pi+         +++e+g+   + L++ + ++mlrr k+dv  +lPpk+ +  +++ls+ ++++Y++  +++ + +++ + +      + +s  k++
  CCD25091.1 1466 PIAasrnsktssKEQEAGVlalEALHKQVLPFMLRRLKEDVLSDLPPKIIQDYYCELSDLQKQLYQDFAKKQKNVVVKDVENT----AEVES--KQH 1556
                  *********9995555555111566666779**********9************************44444333333333333....33333..345 PP

                  HHHHHHHHHHHHH---XX CS
                  xxxxxxxxxxxxxxxxxx RF
      SNF2_N  333 ilelllelrqacnhpqlv 350 
                  i++ l+  r+ cnhp lv
  CCD25091.1 1557 IFQALQYMRKLCNHPALV 1574
                  899************985 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   1.9e-21   2.3e-18      13     111 .]    1637    1740 ..    1627    1740 .. 0.90

  Alignments for each domain:
  == domain 1  score: 66.5 bits;  conditional E-value: 1.9e-21
                  TTTTSEEEEEESSHHHHHH..HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHH CS
  Helicase_C   13 eeeggkilifvntidrlek..vklllekk.gikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlprnvtsyiqri 104 
                    +++++lif++ +d+l++   +l+++   ++++ +l+g++  ++r++++++fn + ++d +L++t+v++ G++++++++Vi+++ ++n+ +  q++
  CCD25091.1 1637 VISQHRALIFCQLKDMLDMveNDLFKKYMpSVTYMRLDGSIDPRDRQKVVRKFNeDPSIDcLLLTTKVGGLGLNLTGADTVIFIEHDWNPMNDLQAM 1733
                  55799**********9999877777444499***********************778999999********************************** PP

                  TTSSSTT CS
  Helicase_C  105 GRtgRag 111 
                  +R++R g
  CCD25091.1 1734 DRAHRLG 1740
                  *****86 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.8   2.2e+03      15      30 ..      22      37 ..      19      38 .. 0.87
   2 !    6.7   0.0    0.0083       9.9       5      30 ..      49      74 ..      45      75 .. 0.82
   3 !   10.2   0.0   0.00062      0.74       1      30 [.     287     316 ..     287     317 .. 0.92
   4 ?    5.0   0.1      0.03        35      15      29 ..     367     381 ..     362     383 .. 0.85
   5 !    6.6   0.0     0.009        11       1      29 [.     539     567 ..     539     568 .. 0.92
   6 !    7.5   0.0    0.0046       5.5       3      30 ..    1109    1136 ..    1108    1137 .. 0.94
   7 !    7.3   0.0    0.0053       6.3       2      29 ..    1189    1215 ..    1187    1217 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.8
                HHHHHHHHHHHHHHHC CS
        HEAT 15 eVReaAakaLgalaev 30
                 VR  Aa  +g+la++
  CCD25091.1 22 VVRNVAADQMGDLAKQ 37
                59************96 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0083
                HHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT  5 llkllsDpspeVReaAakaLgalaev 30
                +   l ++ +e R +Aa+a+g ++++
  CCD25091.1 49 VYPFLLSKKWETRVTAARAVGGIVSH 74
                556677899**************997 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00062
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 +  lll++++++ +e+R  Aa+ L +l+++
  CCD25091.1 287 IYELLLENITSDVWEIRHGAALGLRELMKK 316
                 5789***********************986 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.03
                 HHHHHHHHHHHHHHH CS
        HEAT  15 eVReaAakaLgalae 29 
                  VRe+Aa++L+al+ 
  CCD25091.1 367 PVRESAAQTLAALLL 381
                 5***********986 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.009
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 l+P l   l+++ ++VR+a+++ L a+++
  CCD25091.1 539 LVPKLYPFLRHSISSVRKAVLNLLSAFLS 567
                 78999999*****************9986 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.0046
                  HHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    3 PlllkllsDpspeVReaAakaLgalaev 30  
                  P++l+ l+++ + VR+++a++++++a++
  CCD25091.1 1109 PVFLNSLRSKLSVVRYSTARTFADFAKI 1136
                  99***********************986 PP

  == domain 7  score: 7.3 bits;  conditional E-value: 0.0053
                  HHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    2 lPlllkllsDpspeVReaAakaLgalae 29  
                  +Pl l  +sD++ ++R  A  +++ +++
  CCD25091.1 1189 VPL-LGRMSDSNEDIRTIATTTFASIIK 1215
                  555.5567****************9987 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00069      0.82      13      53 ..      28      69 ..      21      69 .. 0.84
   2 ?   -1.5   0.0       3.2   3.8e+03       1      11 [.     300     310 ..     300     319 .. 0.85
   3 ?    4.1   0.1     0.058        70       2      34 ..     367     399 ..     366     404 .. 0.77
   4 ?    3.8   0.0     0.073        88      28      54 ..     538     564 ..     534     565 .. 0.84
   5 ?    3.8   0.0      0.07        84      17      52 ..    1095    1130 ..    1084    1132 .. 0.83
   6 ?   -1.9   0.0       4.4   5.2e+03      27      50 ..    1143    1167 ..    1140    1172 .. 0.79
   7 ?    4.8   0.0     0.035        42      19      54 ..    1178    1212 ..    1173    1213 .. 0.77
   8 ?   -1.4   0.1         3   3.6e+03      22      39 ..    1487    1504 ..    1478    1513 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00069
     HEAT_EZ 13 r.....laggepellqplvpeilpaLlalLnddsd.eVRaaAagaLg 53
                +     la + pe++  l++++ p+Ll     +++ e+R +Aa+a g
  CCD25091.1 28 AdqmgdLAKQHPEDILNLLSRVYPFLL-----SKKwETRVTAARAVG 69
                44444499*******************.....************976 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.2
     HEAT_EZ   1 wrvRraAawaL 11 
                 w++R++Aa++L
  CCD25091.1 300 WEIRHGAALGL 310
                 99*******99 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.058
     HEAT_EZ   2 rvRraAawaLGrlaggepellqplvpeilpaLl 34 
                 +vR++Aa +L++l+ + +++l+  +  +l++L+
  CCD25091.1 367 PVRESAAQTLAALLLHLDDDLSSKIFSALRQLV 399
                 79*********9887888888876666666666 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.073
     HEAT_EZ  28 eilpaLlalLnddsdeVRaaAagaLgn 54 
                  ++p L ++L+++ ++VR+a++  L++
  CCD25091.1 538 SLVPKLYPFLRHSISSVRKAVLNLLSA 564
                 678888888888888********9996 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.07
     HEAT_EZ   17 gepellqplvpeilpaLlalLnddsd.eV.RaaAagaL 52  
                  + p l+++++    p +l+ L   s+ +V R+ +a+++
  CCD25091.1 1095 MDPYLQKTEIFSRFPVFLNSL--RSKlSVvRYSTARTF 1130
                  678999***************..5565777*****997 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 4.4
     HEAT_EZ   27 peilpaLlalLnddsdeV.RaaAag 50  
                  p i+++ l+l+n++ ++  R+ A  
  CCD25091.1 1143 PFIIREVLPLMNSSGSMAdRQGATE 1167
                  67888999******99988888865 PP

  == domain 7  score: 4.8 bits;  conditional E-value: 0.035
     HEAT_EZ   19 pellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54  
                   + l+ l+  i+p+L+ +++d++ ++R+ A  +++ 
  CCD25091.1 1178 TDVLPYLIFLIVPLLG-RMSDSNEDIRTIATTTFAS 1212
                  5667777888888888.8888888****99988765 PP

  == domain 8  score: -1.4 bits;  conditional E-value: 3
     HEAT_EZ   22 lqplvpeilpaLlalLnd 39  
                  l+ l++++lp++l++L+ 
  CCD25091.1 1487 LEALHKQVLPFMLRRLKE 1504
                  455778999999988843 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.9e-08   2.3e-05       3     170 ..    1265    1434 ..    1263    1435 .. 0.79
   2 ?   -3.1   0.0       5.7   6.8e+03     138     155 ..    1733    1749 ..    1728    1763 .. 0.67

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.9e-08
                  EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHH..HHH-S...............-EEEEESSHHHHHHHHHHGGGGTGG....GEE CS
      ResIII    3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaakli..erllkkgkee..........kflflvprkslleqtleefkkflseaykeigk 87  
                  +lr+yQ++ i+ l + l+ k   +g++    G GKTl  + +i  +++l+++++e            l+++p  sl+  +++ef+++++  ++ i  
  CCD25091.1 1265 TLRKYQQDGINWL-AFLN-KYGLHGILCDDMGLGKTLQTICIIasDQYLRQEDYEkthsvetrklPSLIVCP-PSLTGHWENEFEQYSPFLKT-IVY 1357
                  799*****99755.5776.8889*************977666622456555555569999998876777776.79**************9853.333 PP

                  EESSS-B--........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS..TTTHHHHHT---SEEEEEESS-S CS
      ResIII   88 kvsgdkkka.kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.kswreilekfkeavllglTATpe 170 
                        + +  +++ ++++i++t+++ + +d+       + l++  +++ + DE H ++ + ++  +++++++++ +l lT+Tp 
  CCD25091.1 1358 AGGPSAR-IpLRSHLDSADIVITSYDVARNDL-------QILGKYDYNYCVLDEGHIIKNAqSKLAKAVKQLRANHRLILTGTPI 1434
                  3333333.26999*******************.......777777888********9988646999999999***********96 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 5.7
                  EETGGGTTS.TTTHHHHH CS
      ResIII  138 iDEaHrlgakkswreile 155 
                  +D aHrlg+ k++ ++ +
  CCD25091.1 1733 MDRAHRLGQ-KKVVNVYR 1749
                  799******.54444433 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.26   3.1e+02      39      74 ..      19      54 ..       4      64 .. 0.86
   2 !    7.8   0.0    0.0041       4.9       3      96 ..     416     515 ..     414     516 .. 0.83
   3 ?    2.0   0.1      0.27   3.2e+02       3      78 ..     903     980 ..     901    1001 .. 0.74
   4 !    7.2   0.0    0.0063       7.5       3      58 ..    1162    1217 ..    1160    1221 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.26
  Vac14_Fab1_bd 39 kdsrvRyyacEslyniakvakgevlkllneifdalv 74
                   + + vR  a++ +  +ak+  +++l+ll++++  l 
     CCD25091.1 19 STQVVRNVAADQMGDLAKQHPEDILNLLSRVYPFLL 54
                   56789**************************98875 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0041
  Vac14_Fab1_bd   3 rkggligLa.avaialekk.ikeyleeivkpvlkcfsDkdsrvRyyacEslyni....akvakgevlkllneifdalvklvaDsdesvksgaelld 92 
                     +ggl+g+  +v+i  e   +++ l+++v++vl  ++ +d+ v   a+  l  i    +k+   ++ +++++i+  l++l  D  +sv s  +ll 
     CCD25091.1 416 THGGLLGIRyFVSIRTEFLlSNDLLNDVVDIVLYGLKQTDDDVQSVAAAILTPItdsfVKMEPRKIDTVVTTIWASLTHLDDDLSSSVGSVMDLLA 511
                    67999998514555555548899****************************98733336888889999999*****************99999999 PP

  Vac14_Fab1_bd  93 rllk 96 
                    +l k
     CCD25091.1 512 NLCK 515
                    8876 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.27
  Vac14_Fab1_bd   3 rkggligLaavaialekkikeyleeivkpvlkcfsD.kdsrvRyyacEsly.niakvakgevlkllneifdalvklva 78 
                    r+ ++++ +a+a+ l k i + l+ i++ +++++++ k++++   a +++   i   +k++   + n+i + l+  ++
     CCD25091.1 903 RTCSIMSSYAAALLLIKGIPKKLNPIIRALMESVKEeKNKKLQMMAGDAIIhLIDELLKNNKSAVANKIVKNLCGFLC 980
                    667788889999999999*************99986257789999999875155567788888888888888886544 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0063
  Vac14_Fab1_bd    3 rkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakva 58  
                     r+g+   ++ +++++++++ +yl  ++ p+l  +sD+++ +R  a+ ++  i+k +
     CCD25091.1 1162 RQGATELIYHLSLSMGTDVLPYLIFLIVPLLGRMSDSNEDIRTIATTTFASIIKLV 1217
                     6777777889999********************************99999999876 PP

>> TAF6_C  TAF6 C-terminal HEAT repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0051       6.1      21      68 ..      22      69 ..      14      81 .. 0.82
   2 ?    5.0   0.0     0.026        31      14      47 ..     294     327 ..     266     368 .. 0.73
   3 ?    2.7   0.0      0.14   1.6e+02      20      76 ..     366     426 ..     347     439 .. 0.69
   4 ?   -0.1   0.0         1   1.2e+03      24      72 ..     460     508 ..     451     516 .. 0.89
   5 ?    1.3   0.0      0.36   4.3e+02      23      59 ..     751     790 ..     746     818 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0051
      TAF6_C 21 aLRdfAAslLakilkkysssyktLkprvtrtllkvlldpkkslgtlyG 68
                 +R+ AA++++ ++k++++   +L +rv   ll+   ++  +++ + G
  CCD25091.1 22 VVRNVAADQMGDLAKQHPEDILNLLSRVYPFLLSKKWETRVTAARAVG 69
                58***************************9998766665555555555 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.026
      TAF6_C  14 seledhwaLRdfAAslLakilkkysssyktLkpr 47 
                 ++++d w++R  AA  L +++kk++ss + +k +
  CCD25091.1 294 NITSDVWEIRHGAALGLRELMKKHTSSVSRVKGK 327
                 567788********************99988866 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.14
      TAF6_C  20 waLRdfAAslLakilkkysssyktLkprvtrtllkvl.......ldpkkslgtlyGallglaal 76 
                   +R+ AA++La +l +  +    L++++++ l + +         p+k  ++  G llg++ +
  CCD25091.1 366 APVRESAAQTLAALLLHLDDD---LSSKIFSALRQLVlqdpkvvGLPNKIWEATHGGLLGIRYF 426
                 568***********9998766...9999999999988333333333355555577777777666 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1
      TAF6_C  24 dfAAslLakilkkysssyktLkprvtrtllkvlldpkkslgtlyGallg 72 
                 + AA +L  i + + +  +     v+ t+   l+  +++l++  G+++ 
  CCD25091.1 460 SVAAAILTPITDSFVKMEPRKIDTVVTTIWASLTHLDDDLSSSVGSVMD 508
                 679999*******99999999999*********9999999999999975 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.36
      TAF6_C  23 RdfAAslLakilk...kysssyktLkprvtrtllkvlldp 59 
                 R fAA +L + +k   +y++++++L p v+ ++  +l d+
  CCD25091.1 751 RLFAAIILTQFCKswlEYHTEQTQLPPFVSTIFGDILNDQ 790
                 889*********95555999999**999999998888776 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0038       4.6       8      71 ..      15      91 ..      12     102 .. 0.66
   2 ?    2.6   0.0      0.15   1.8e+02      34      59 ..     289     314 ..     282     377 .. 0.73
   3 ?    5.4   0.0      0.02        24      26      64 ..     533     574 ..     509     579 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0038
      HEAT_2  8 lendpdpevrraairaLg...rignp...ealpaLvellededpavRraaaeaLgai.......gdpealpaLkell 71
                le+ + + vr  a++++g   +++++    +l  + ++l ++++++R +aa+a g i       + +e+ ++L+ + 
  CCD25091.1 15 LETGSTQVVRNVAADQMGdlaKQHPEdilNLLSRVYPFLLSKKWETRVTAARAVGGIvshaplwDPNEDDDVLQNIN 91
                55666677899999999954344444344446666677799*************98745444433455666666555 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.15
      HEAT_2  34 paLvellededpavRraaaeaLgaig 59 
                 ++L+e ++++ +++R+ aa  L ++ 
  CCD25091.1 289 ELLLENITSDVWEIRHGAALGLRELM 314
                 67888899999999999999988763 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.02
      HEAT_2  26 rignpealpaLvellededpavRraaaeaLgai...gdpeal 64 
                 ++  ++++p L ++l+++ + vR+a+ + L+a+   +d+++ 
  CCD25091.1 533 EWSFKSLVPKLYPFLRHSISSVRKAVLNLLSAFlsiKDDSTK 574
                 4444589***********************976444555555 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       4.7   5.6e+03      47      63 ..     368     384 ..     309     400 .. 0.46
   2 ?    3.5   0.1     0.054        64      48     101 ..     537     588 ..     485     631 .. 0.58
   3 ?   -3.7   0.0       9.9   1.2e+04      83     100 ..    1198    1215 ..    1195    1216 .. 0.86
   4 ?    2.5   0.0      0.12   1.4e+02      38      78 ..    1405    1445 ..    1404    1450 .. 0.94
   5 ?    5.2   0.0     0.017        20      16      58 ..    1541    1589 ..    1535    1614 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.7
         UME  47 issalpqimacLqsale 63 
                 ++  ++q +a L   l+
  CCD25091.1 368 VRESAAQTLAALLLHLD 384
                 22222333444444443 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.054
         UME  48 ssalpqimacLqsaleidelrsaalsvWatllsnlededleplleqtfalivql 101
                 +s +p++  +L++ +++  +r+a l+  +++ls+ +d+    l +++f l++q+
  CCD25091.1 537 KSLVPKLYPFLRHSISS--VRKAVLNLLSAFLSIKDDSTKNWLNGKIFRLLFQN 588
                 55555555555555554..55555555555555555555555555555555444 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 9.9
         UME   83 ededleplleqtfalivq 100 
                  ++ed+ ++  +tfa+i++
  CCD25091.1 1198 SNEDIRTIATTTFASIIK 1215
                  57899999******9987 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.12
         UME   38 eliklagssissalpqimacLqsaleidelrsaalsvWatl 78  
                   +ik a+s+++ a+ q+ a  +  l    ++++ ++ W+ +
  CCD25091.1 1405 HIIKNAQSKLAKAVKQLRANHRLILTGTPIQNNVVELWSLF 1445
                  5899**********************************988 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.017
         UME   16 klndshgkkslaekkraikaleeliklagss...issalp...qimacL 58  
                  +++d+++  ++++k+++ +al+ + kl+++    +s+  p   q+ + L
  CCD25091.1 1541 VVKDVENTAEVESKQHIFQALQYMRKLCNHPalvLSPNHPqlaQVKSYL 1589
                  678999999*******************999555333333333444444 PP

>> GUN4_N  ARM-like repeat domain, GUN4-N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00035      0.42      40      69 ..     559     588 ..     551     602 .. 0.91
   2 ?    2.0   0.1      0.17   2.1e+02       9      29 ..    1521    1541 ..    1514    1546 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00035
                 HHHHHHHHHHHSSSS-THHHHHHHHHHHCT CS
      GUN4_N  40 leiLqeFLlksqeepatlveGkvyqvLyqs 69 
                 l++L  FL  + + + ++ +Gk++++L+q+
  CCD25091.1 559 LNLLSAFLSIKDDSTKNWLNGKIFRLLFQN 588
                 6899***********************996 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.17
                  HCHHHHHHCHHS-CCCHHHHH CS
      GUN4_N    9 dlseLrqqLesgsekkqlqai 29  
                  +ls+L++qL+++ +kkq +++
  CCD25091.1 1521 ELSDLQKQLYQDFAKKQKNVV 1541
                  799**************9876 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.2e-05      0.05      74     134 ..    1662    1723 ..    1629    1757 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.2e-05
  ERCC3_RAD25_C   74 keyakklkkpyiyGetseaerlkilqkfkknpkvntifl.skvgDtsiDlPeanvliqissh 134 
                     k+y  +++++ + G+++ ++r+k+++kf+++p++++++l  kvg   ++l  a  +i i+ +
     CCD25091.1 1662 KKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLtTKVGGLGLNLTGADTVIFIEHD 1723
                     5677777888899***********************99846****************99875 PP

>> Dna2  DNA replication factor Dna2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00021      0.25      63     155 ..     550     663 ..     547     693 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
        Dna2  63 slsClRravLqerl...kvsgesskamliGtilHelfqkalleee.................ldkekleelldklleknleelyalglt.eeeakeeik 140
                 s+s  R+avL+       + ++s+k+ l G+i+  lfq++lle++                 +++++ e++ld++ +k+l+ +++l  t + e  ++ +
  CCD25091.1 550 SISSVRKAVLNLLSaflSIKDDSTKNWLNGKIFRLLFQNILLEQHpdilqlsfnvytellshYKSKHTEKTLDHVFSKHLQPILHLLNTpIGENGKNYS 648
                 5666799988754333489999*******************8877777888888888888878888888888888888888877654442455555555 PP

        Dna2 141 ekleeiekwakkyvk 155
                  +++ i k +++y  
  CCD25091.1 649 MEAQYILKPSQHYQL 663
                 555555555555555 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00018      0.22      24      64 ..    1533    1574 ..    1523    1641 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00018
                   TTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB- CS
  Pkinase_Tyr   24 kekkevkVavKtlkeeateeekeelleeakimkkl.khpniv 64  
                     kk+ +V+vK ++++a+ e+k+++++ ++ m+kl +hp +v
   CCD25091.1 1533 FAKKQKNVVVKDVENTAEVESKQHIFQALQYMRKLcNHPALV 1574
                   5678999********************************998 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.5    0.0017         2      56     121 ..     572     639 ..     503     657 .. 0.77
   2 ?    0.2   0.1      0.51     6e+02       9      52 ..     929     968 ..     923    1006 .. 0.73
   3 ?    0.8   0.1      0.34   4.1e+02     118     143 ..    1550    1575 ..    1480    1576 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0017
      Sec7_N  56 ellqllkqklcplLlknlsespsfpvferslrivllLlkkfrs.eLktEievflsllililles.dss 121
                 +  + l  k+++lL++n+  ++++ ++++s++++  Ll++++s + ++ +  ++s  ++++l   +++
  CCD25091.1 572 STKNWLNGKIFRLLFQNILLEQHPDILQLSFNVYTELLSHYKSkHTEKTLDHVFSKHLQPILHLlNTP 639
                 4566788899********9********************99872455667777777777776554444 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.51
      Sec7_N   9 frdLcklinsakskpkflslaersktfsLeLlesvlsnhgdvfr 52 
                  r+L+  ++ ++ k+k  +l+++     ++L+  +l+n+++ + 
  CCD25091.1 929 IRALMESVK-EE-KNK--KLQMMAGDAIIHLIDELLKNNKSAVA 968
                 556666644.33.455..78999999999999999999998764 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.34
      Sec7_N  118 sdsslwqrvlaLeilrrlcsdpqllv 143 
                  +  s ++   aL+ +r+lc++p l++
  CCD25091.1 1550 EVESKQHIFQALQYMRKLCNHPALVL 1575
                  23444677789***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1860 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1054  (0.0587874); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 1.09u 0.32s 00:00:01.41 Elapsed: 00:00:00.49
# Mc/sec: 11420.94
//
Query:       CCD25092.1  [L=193]
Description: hypothetical protein NDAI_0E02750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-13   50.1   0.2    6.3e-13   48.2   0.2    2.0  1  S4        S4 domain


Domain annotation for each model (and alignments):
>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.2   3.5e-17   6.3e-13       1      44 [.     107     150 ..     107     153 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.2 bits;  conditional E-value: 3.5e-17
                 EEHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-T CS
          S4   1 rRLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkp 44 
                 rRL++ +++lgla+s  +Ar lI+++++ V +++v++ps++V+ 
  CCD25092.1 107 RRLQTQVYKLGLAKSVHHARVLISQRHIAVGKQIVTIPSFMVRL 150
                 8*****************************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1418.39
//
Query:       CCD25093.1  [L=160]
Description: hypothetical protein NDAI_0E02760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-49  163.8   6.0    2.7e-48  162.0   4.6    1.9  2  Ribosomal_L21e  Ribosomal protein L21e
    0.00027   20.6   0.1    0.00033   20.3   0.1    1.1  1  LRS4            Monopolin complex subunit LRS4


Domain annotation for each model (and alignments):
>> Ribosomal_L21e  Ribosomal protein L21e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   4.6     3e-52   2.7e-48       1     101 []       1     101 [.       1     101 [. 0.99
   2 ?    1.4   0.0     0.032   2.9e+02      20      50 ..     106     136 ..     102     148 .. 0.76

  Alignments for each domain:
  == domain 1  score: 162.0 bits;  conditional E-value: 3e-52
                     X--S-STTTT-TTTTS--GGG-SS--SHHHH----TT-EEEE---TT--SS---GGGTT-EEEE..EEEETTEEEEEEEETTE..EEEEEE-GGG CS
  Ribosomal_L21e   1 mknskglrrgtrklfskkfrkkgvpplstylreykkGdkVdikidpsvqkgmphkryhGktgrvynvtkravgvivnkkvggkileKriivrieh 95 
                     m +s+g+r++tr++f+++frk+g + lstyl+ yk+Gd+Vdik+++s+qkgmphk+y+Gktg+vynvtk++vgvi+nk vg+++leKr+++rieh
      CCD25093.1   1 MGKSHGYRSRTRYMFQRDFRKHGAIALSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRIEH 95 
                     889******************************************************************************************** PP

                     EEE--. CS
  Ribosomal_L21e  96 lkksks 101
                     +k+sk+
      CCD25093.1  96 IKHSKC 101
                     ****98 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.032
                     GG-SS--SHHHH----TT-EEEE---TT--S CS
  Ribosomal_L21e  20 rkkgvpplstylreykkGdkVdikidpsvqk 50 
                      ++  ++ ++ ++   kG+ V++k +p+  +
      CCD25093.1 106 LDRVKSNAAKRVEAKAKGEAVQLKRQPAQPR 136
                     5566677778888889999999999998765 PP

>> LRS4  Monopolin complex subunit LRS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   3.6e-08   0.00033      11      67 ..      74     132 ..      63     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 3.6e-08
                 HHHHHHH...HHHH...........HHHHHHHXXXXXXXXXXXX..XXXXXXXXXXXXXXX CS
        LRS4  11 kldneri...YlekaLnla.hllrsdslqksfldalktnatdselqnekltdEklllqeQi 67 
                 ++ n  +   Ylek Lnl+ + ++ ++ +++fld  k na +    + k+  E ++l++Q 
  CCD25093.1  74 VIINKMVgnrYLEKRLNLRiEHIKHSKCRQEFLDRVKSNAAKRV--EAKAKGEAVQLKRQP 132
                 4555555778*******97689********************77..99************4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1249.22
//
Query:       CCD25094.1  [L=242]
Description: hypothetical protein NDAI_0E02770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-52  175.9   9.2      6e-52  175.6   9.2    1.1  1  Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (
  ------ inclusion threshold ------
      0.086   13.0   1.8       0.22   11.6   1.8    1.7  1  DUF1940        Domain of unknown function (DUF1940)


Domain annotation for each model (and alignments):
>> Mt_ATP-synt_B  Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.6   9.2   6.7e-56     6e-52       2     163 .]      74     235 ..      73     235 .. 0.99

  Alignments for each domain:
  == domain 1  score: 175.6 bits;  conditional E-value: 6.7e-56
                    HHHHHHCCCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHH CS
  Mt_ATP-synt_B   2 iayliSkeiyvvneEtlvalcfigflilvakslgpsikefldkriekiqeelnqsrnlkeealkerieqekklqslveltkslfevskeqvaleae 97 
                    ++y+iS+e+yv+n+E++++++f+ f+ l+ak+l+p+++ef+++r++k++++ln+sr  +++a+keri+++++lq+++e+tk+lf+vske+++lea+
     CCD25094.1  74 TVYAISNELYVINDESILLATFLTFTALSAKFLAPMYNEFAEARLKKVSDILNASRGRHVDAIKERINMVSELQNVTETTKVLFDVSKETIELEAK 169
                    78********************************************************************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTCCCCHHHHHHHHHHHHH CS
  Mt_ATP-synt_B  98 aferelqaklareikkkldtlvnaessrrqrlQdelvkgvissVlkelsspkfkkevlqesiadle 163
                    +fe+++++ la+++k++ld++v++e + rq++Q++l +++ s+V+++l +pkf+++vlq+si+d+e
     CCD25094.1 170 NFELKQKVDLANQAKSVLDSWVRHETALRQLQQKQLTSSLLSKVESQLNDPKFQDKVLQQSISDVE 235
                    ***************************************************************997 PP

>> DUF1940  Domain of unknown function (DUF1940)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.8   2.4e-05      0.22      31     113 ..     125     204 ..     107     242 .] 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.4e-05
                 HHHHT-SSHHHHHHHHHHHHHHHHTTT-------HHHHHHHHH-------HHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH CS
     DUF1940  31 laiseGikvqatrelldilDtlyqslsDpeskLkDeqrkkLnhadevWlDikekmsnGdrraayllaaaahlekavaylvrmk 113
                 l  s G +v+a++e ++++  l q++++   +L D  + ++  +  + +++k+k++  ++   ++l +    e+a+  l + +
  CCD25094.1 125 LNASRGRHVDAIKERINMVSEL-QNVTETTKVLFDVSKETIELEA-KNFELKQKVDLANQA-KSVLDSWVRHETALRQLQQKQ 204
                 67899***************98.78999999****9999888765.557999999988874.445555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1310  (0.073066); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 1891.72
//
Query:       CCD25095.1  [L=258]
Description: hypothetical protein NDAI_0E02780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-23   80.4   1.9    6.4e-23   80.4   1.9    1.7  2  DUF5315          Disordered region of unknown function (DUF53
  ------ inclusion threshold ------
      0.074   10.9   0.1      0.089   10.7   0.1    1.2  1  Orbi_VP3         Orbivirus VP3 (T2) protein
      0.094   12.7   0.0        4.3    7.3   0.0    2.2  2  APAF1_C          APAF-1 helical domain
       0.73   10.2   2.6          3    8.3   1.5    2.6  2  Ntox1            Putative RNase-like toxin, toxin_1
        3.1    8.3   6.4          8    7.0   0.8    3.2  3  Snapin_Pallidin  Snapin/Pallidin


Domain annotation for each model (and alignments):
>> DUF5315  Disordered region of unknown function (DUF5315)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.2     8e+03       8      25 ..      76      93 ..      72      94 .. 0.76
   2 !   80.4   1.9   1.8e-26   6.4e-23       3      77 .]     125     197 ..     123     197 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.2
     DUF5315  8 psvdrqDalWaeidtLdd 25
                 +v++ D  ++++d L d
  CCD25095.1 76 DDVSKFDTYYSDVDNLHD 93
                567788999999998876 PP

  == domain 2  score: 80.4 bits;  conditional E-value: 1.8e-26
     DUF5315   3 rseskpsvdrqDalWaeidtLddVklsAeegkkthvFgeehekaLeelReaqikLaqawrrseadekleeekrre 77 
                 r+eskp+vd+qD+lW+e+d+L+dV+++A++++ + +F++e++++++++R+a+ kL+q +r++  ++klee++rre
  CCD25095.1 125 RLESKPKVDNQDKLWEELDALNDVRKTAQQNDLYGGFSDEFRDSIQKIRQAHSKLIQFLREK--NAKLEEKQRRE 197
                 789***********************************************************..*******9986 PP

>> Orbi_VP3  Orbivirus VP3 (T2) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   2.5e-05     0.089      40     121 ..      28     111 ..      11     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.5e-05
    Orbi_VP3  40 atrevdftvpdvqkilddiktlaaeqvyki..vkvpsisfrhiv.mqsrdrvlrvdtyyeemsqvgdvitedepekfystiikkv 121
                 + re+  t+p+++  ++  k  a++q   +  v+ p    r     +  d v + dtyy ++ ++ d + e+ p++++   +kk 
  CCD25095.1  28 SIREIPRTIPNIDVYMQ-SKLNASKQGRTVstVQNPFFKTRSNAfSEPSDDVSKFDTYYSDVDNLHDTVNENGPNNIFKDYVKKN 111
                 57899999999876554.56666666655511555666666544156789****************************9999985 PP

>> APAF1_C  APAF-1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0012       4.3      42      78 ..      75     111 ..      70     122 .. 0.90
   2 ?    3.2   0.0     0.023        81      78     112 ..     166     199 ..     125     211 .. 0.75

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0012
     APAF1_C  42 anlveelkallldldwieakvkltgpsslledyvkyr 78 
                 ++ v+++ + ++d+d ++  v+ +gp ++ +dyvk +
  CCD25095.1  75 SDDVSKFDTYYSDVDNLHDTVNENGPNNIFKDYVKKN 111
                 678999****************************965 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.023
     APAF1_C  78 rkileendeeeledfeeflsvnahlleekpfpdii 112
                 r  ++ + ++  +++ +fl+++   leek++ ++ 
  CCD25095.1 166 RDSIQ-KIRQAHSKLIQFLREKNAKLEEKQRREVA 199
                 45555.45567789999**********99988876 PP

>> Ntox1  Putative RNase-like toxin, toxin_1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.74   2.7e+03      32      49 ..      35      52 ..      12      69 .. 0.77
   2 ?    8.3   1.5   0.00083         3      36      68 ..     124     156 ..      90     202 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.74
       Ntox1 32 PCPvlrveYkkelaadde 49
                  P++ v  + +l+a  +
  CCD25095.1 35 TIPNIDVYMQSKLNASKQ 52
                468888888888877665 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00083
       Ntox1  36 lrveYkkelaaddelkeeneevealRkldakla 68 
                 +r+e k +++++d+l ee + ++ +Rk++ + +
  CCD25095.1 124 IRLESKPKVDNQDKLWEELDALNDVRKTAQQND 156
                 89**************************99865 PP

>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.26   9.3e+02      42      70 ..      22      52 ..      14      62 .. 0.77
   2 ?    1.7   0.1     0.097   3.5e+02      27      44 ..     133     150 ..     131     158 .. 0.77
   3 ?    7.0   0.8    0.0022         8      16      50 ..     163     197 ..     156     204 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.26
  Snapin_Pallidin 42 kLkeleeaqe.aevlpdlkeya.kKLvnikk 70
                     +++e+  + e   ++p+++ y   KL++ k+
       CCD25095.1 22 DYEENHSIREiPRTIPNIDVYMqSKLNASKQ 52
                     5677777888888999999998578888775 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.097
  Snapin_Pallidin  27 qsQeeLleqldrlnekLk 44 
                      ++Q++L e+ld ln+  k
       CCD25095.1 133 DNQDKLWEELDALNDVRK 150
                      68*********9997544 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0022
  Snapin_Pallidin  16 deldeklkelrqsQeeLleqldrlnekLkeleeaq 50 
                      de++++++++rq  ++L + l++ n+kL+e ++ +
       CCD25095.1 163 DEFRDSIQKIRQAHSKLIQFLREKNAKLEEKQRRE 197
                      68999***********************9877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1274  (0.0710581); expected 358.6 (0.02)
Passed bias filter:                      704  (0.039266); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 1972.99
//
Query:       CCD25096.1  [L=299]
Description: hypothetical protein NDAI_0E02790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.8e-64  216.0  19.5    7.7e-64  215.8  19.5    1.0  1  GPI2      Phosphatidylinositol N-acetylglucosaminyltransferas
  ------ inclusion threshold ------
       0.63   10.3   5.1        8.3    6.7   0.9    2.8  2  VirB3     Type IV secretory pathway, VirB3-like protein
          5    7.3   8.2       0.89    9.7   3.2    2.4  2  SPC12     Microsomal signal peptidase 12 kDa subunit (SPC12)


Domain annotation for each model (and alignments):
>> GPI2  Phosphatidylinositol N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.8  19.5   1.3e-67   7.7e-64       1     280 []      12     291 ..      12     291 .. 0.89

  Alignments for each domain:
  == domain 1  score: 215.8 bits;  conditional E-value: 1.3e-67
        GPI2   1 WkKlLwvkqsypDnYtdetFleeLqrn.........prvkpydfwplvadstvivqhvcsviifvlvFvgiyqervspvsvvllssiltvlgwllwelw 90 
                 W +lLw kq+ypDnYtd+tFl+ +++            +k+ d+ +++ +++ +++ ++++++++++F++iy+++ +pv ++++ s+l++++ +  ++ 
  CCD25096.1  12 WTRLLWLKQDYPDNYTDPTFLKFMENLrerkskpkdYILKKDDYEKIRLNFLGFYHILLNTCFIFICFTYIYEYKANPVPLTGCVSFLLLCLSISNRFQ 110
                 9******************99998877888999988788999***********************************************9998888554 PP

        GPI2  91 askeesrssraqqrlktiksalliyftllglSPiLksLTkstssDSIwalsfwlllinifffdysiekkkskekeek.lvaslStnaalmastvLASRL 188
                 +        ++ ++l ++ks+++++f++l++SPiLksL+k+t+sDSIw+lsfwl+++++f +  ++ ++++k+++e   +++lStn+ l+++ vLASRL
  CCD25096.1 111 T--------NELSALLNFKSSIILIFIMLTVSPILKSLSKTTASDSIWTLSFWLTIFYTFAIASTSLQNREKKTNEIrRPSNLSTNILLANVSVLASRL 201
                 4........67899**********************************************9999988777776665579******************** PP

        GPI2 189 pstlqVFslllfsievfglfPvfrrslrhrswrlhvvltvllvllagagvgiilklllavvlllllalimgvcpwwliglqkykne....iyGpWD 280
                 +st++VF++l+++ie+++++P + +s ++      + lt+   l++++++ i l+l +++++l++++++ +v+p w++++  ++++    i + WD
  CCD25096.1 202 SSTTDVFCFLTLCIELNIILPSILKSGWNF-----TSLTISN-LIVYVFLNISLGLSYTLLILAFSLFYLVVLPRWFFYWRVHYHRddveILTIWD 291
                 ************************999862.....2233222.2234556666778999**********************776655777999998 PP

>> VirB3  Type IV secretory pathway, VirB3-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2    0.0077        46      23      52 ..     125     161 ..     115     174 .. 0.63
   2 ?    6.7   0.9    0.0014       8.3      21      61 ..     243     283 ..     238     294 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0077
       VirB3  23 vllnllvsvilfl............vglslwillllvplhlv 52 
                 +l+ ++++v ++l            ++ls+w+      ++ +
  CCD25096.1 125 ILIFIMLTVSPILkslskttasdsiWTLSFWLT-----IFYT 161
                 445555555555599999996666666666666.....3333 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0014
       VirB3  21 elvllnllvsvilflvglslwillllvplhlvlrliakrDp 61 
                 +++ ++l++s  l ++++sl++l++l+  +++ r+  +rD+
  CCD25096.1 243 VFLNISLGLSYTLLILAFSLFYLVVLPRWFFYWRVHYHRDD 283
                 5666788999999999*******888877766666666654 PP

>> SPC12  Microsomal signal peptidase 12 kDa subunit (SPC12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       0.9   5.4e+03      54      54 ..      79      79 ..      62     103 .. 0.54
   2 ?    9.7   3.2   0.00015      0.89      21      61 ..     234     276 ..     226     280 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.9
       SPC12 54 P 54
                 
  CCD25096.1 79 F 79
                2 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00015
       SPC12  21 aviafivGyitqdlkltl..yillagvvltllvvvPpWpfYnr 61 
                  +i+ ++ y++ +++l l   +l++++ l  lvv+P W fY r
  CCD25096.1 234 LTISNLIVYVFLNISLGLsyTLLILAFSLFYLVVLPRWFFYWR 276
                 56666677777776666510445556667789********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2310.97
//
Query:       CCD25097.1  [L=1426]
Description: hypothetical protein NDAI_0E02800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-23   83.0   2.2    4.1e-23   81.5   2.2    1.9  1  GCR1_C    Transcriptional activator of glycolytic enzymes


Domain annotation for each model (and alignments):
>> GCR1_C  Transcriptional activator of glycolytic enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   2.2   2.3e-27   4.1e-23       1      80 []     897     989 ..     897     989 .. 0.89

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 2.3e-27
      GCR1_C   1 fklsreiktVedlwnEykeglngkpsikslekky.gkrWrkdskesklfsrRkkiidfierli.............eeegitreeavkileelR 80 
                 +klsre+kt++dl++E++ glngkpsik+l++ky ++rW+ +++ s++f++R++i+d+ie+++             + ++  r+ +v++le++R
  CCD25097.1 897 YKLSRENKTIWDLYTEWYIGLNGKPSIKKLIEKYgWRRWKVTED-SHFFPTRRIIMDYIETECdrgiklgrftkpdQPREEIRKIIVSDLEKFR 989
                 9*****************************************99.******************7777777776665333467788888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2079  (0.115957); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.08u 0.28s 00:00:01.36 Elapsed: 00:00:00.49
# Mc/sec: 8774.38
//
Query:       CCD25098.1  [L=756]
Description: hypothetical protein NDAI_0E02810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-40  138.9   0.0    5.5e-40  136.8   0.0    2.2  1  AAA           ATPase family associated with various cellular 
    7.1e-08   32.1   0.0    1.9e-07   30.8   0.0    1.7  1  AAA_lid_3     AAA+ lid domain
    5.7e-06   26.2   0.0    2.2e-05   24.4   0.0    2.1  1  Vps4_C        Vps4 C terminal oligomerisation domain
    1.9e-05   24.9   1.2    0.00012   22.2   0.0    2.9  3  AAA_2         AAA domain (Cdc48 subfamily)
    0.00015   21.5   0.0    0.00041   20.1   0.0    1.7  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
    0.00069   18.9   0.0    0.00069   18.9   0.0    2.9  2  TIP49         TIP49 P-loop domain
     0.0011   19.3   2.7     0.0014   18.9   0.1    2.6  2  AAA_22        AAA domain
     0.0029   17.0   0.1     0.0092   15.4   0.1    1.8  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
     0.0031   17.9   0.1      0.072   13.5   0.0    2.5  2  AAA_16        AAA ATPase domain
     0.0033   17.4   2.0      0.012   15.6   0.0    2.9  3  AAA_5         AAA domain (dynein-related subfamily)
     0.0078   16.0   0.0       0.02   14.6   0.0    1.7  1  IstB_IS21     IstB-like ATP binding protein
     0.0083   15.6   0.4       0.12   11.9   0.0    2.8  3  AAA_7         P-loop containing dynein motor region
  ------ inclusion threshold ------
      0.031   14.5   5.0        1.7    8.9   0.1    4.0  4  AAA_28        AAA domain
      0.062   13.9   0.0      0.062   13.9   0.0    3.8  3  AAA_18        AAA domain
       0.11   12.1   0.0       0.49    9.9   0.0    2.0  2  AAA_25        AAA domain
       0.36   11.2   0.0       0.36   11.2   0.0    3.3  1  AAA_17        AAA domain
        1.2    9.4   9.8       0.14   12.5   4.0    2.2  2  ASPRs         Ancylostoma-associated secreted protein related
        4.3    5.9   8.4         11    4.6   6.8    2.1  2  HI0933_like   HI0933-like protein


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   0.0   5.6e-43   5.5e-40       1     132 []     511     649 ..     511     649 .. 0.98

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 5.6e-43
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTS CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnqLlteldgvkkk 99 
                 +ll+GppGtGKT++akava+e++++f++is+s+llsky+gesek +r+lf  ak+ + psi+f+DEid+l ++rs++e+e+++r+  +Ll +++ ++k 
  CCD25098.1 511 MLLFGPPGTGKTMIAKAVATESHSTFFSISASSLLSKYLGESEKLVRALFYMAKRLS-PSIIFLDEIDSLLTTRSDNENESSRRIKTELLIQWSSLSKA 608
                 89******************************************************9.***************************************** PP

                 .........SSTEEEEEEESSGGGSTHHHHSTTSSEEEETTS CS
         AAA 100 .........eskvivigatnrpdkldpallrgRfdrkieiel 132
                          +++v++++atn p+ +d+a + +Rf+++++i+l
  CCD25098.1 609 iphsdpngkSNNVLLLAATNLPWAIDEAAR-RRFSKRLYIPL 649
                 *********888******************.7*******985 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.9e-10   1.9e-07       7      37 ..     678     708 ..     673     727 .. 0.72

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.9e-10
   AAA_lid_3   7 LAerTeGySGADlaalcreAallAlrrgike 37 
                 +  +TeG+SG D+ al +eAa++ +r+  +e
  CCD25098.1 678 ISIATEGFSGSDITALAKEAAMEPIRDLGDE 708
                 5558**********************95443 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.2e-08   2.2e-05      29      61 .]     720     752 ..     716     752 .. 0.96

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 2.2e-08
      Vps4_C  29 vtlkDflkalkkarptVskeDLekheeFTkefG 61 
                 v+ +Df+ al++ +++Vske L  +e +  +fG
  CCD25098.1 720 VSKQDFDTALSTIKKSVSKESLSHYEHWALQFG 752
                 899*****************************9 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   2.5       9.1     9e+03      30      59 ..     180     209 ..     140     221 .. 0.57
   2 ?   -1.6   0.0       2.5   2.5e+03      71      82 ..     417     428 ..     363     438 .. 0.63
   3 !   22.2   0.0   1.2e-07   0.00012       6     138 ..     511     638 ..     506     672 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.1
                 ....-EEEEEGGG-------THHHHHHHHH CS
       AAA_2  30 kkekkliradaselleeeevehlvsrliga 59 
                 +++ ++  + + el  +++ve+ v+  + +
  CCD25098.1 180 QERIEIQNKKMLELKIKDQVETEVNAKLEQ 209
                 444455555566666666666666555544 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 2.5
                 EEEEETGGG--- CS
       AAA_2  71 ivllDEidKihp 82 
                  vl DE+dK ++
  CCD25098.1 417 AVLKDEVDKTQE 428
                 588899999877 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 1.2e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHHHHH.H CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqrdLL.q 101
                 +ll gp g+Gkt++aka+a   +    +++  + as+ll     e+e+lv  l        ++    i++lDEid    ++s +++ S+  + + LL q
  CCD25098.1 511 MLLFGPPGTGKTMIAKAVATESH----STFFSISASSLLSkyLGESEKLVRALFYM----AKRLSPSIIFLDEIDSLLTTRSDNENESSRRIKTELLiQ 601
                 7899*****************99....59*********993323444444444333....3344456***********996666666666666555416 PP

                 HHH--EE-------EE-TT-EEEEEE--TTHHHHTTT CS
       AAA_2 102 ileggtltdkqgrkvdtknilfImtgafgsskisdes 138
                     +++ ++++ + + +n+l+++++++  +  + ++
  CCD25098.1 602 WSSLSKAIPHSDPNGKSNNVLLLAATNLPWAIDEAAR 638
                 6666666677777789999999999998776666544 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.1e-07   0.00041      31      97 ..     506     580 ..     501     590 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.1e-07
      RuvB_N  31 ealdhvllyGpPGlGkttlakiiakelgvklkitsgPv.lek....agdlaalltnleek...dvlfideihrls 97 
                 e++  +ll+GpPG Gkt +ak +a+e ++++ + s+   l+k    +  l+  l  + ++    ++f+dei  l 
  CCD25098.1 506 EPVRGMLLFGPPGTGKTMIAKAVATESHSTFFSISASSlLSKylgeSEKLVRALFYMAKRlspSIIFLDEIDSLL 580
                 566679********************9998776665541443222256677666666554333799999998775 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3       1.8   1.8e+03     129     177 ..     431     478 ..     386     488 .. 0.61
   2 !   18.9   0.0   6.9e-07   0.00069      51     103 ..     509     559 ..     499     567 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.8
                 ..-SSS-...TTS--EEEEEE-SS-EEEEEE-HHHHHHHHHHT--TT-EE CS
       TIP49 129 eaenpls.kekkikevkitlktakeekklklgskiaeellkekvkegDvi 177
                 ++ +++s  +++ik+++ tl+ ++e+   ++ + i   ++ ek++ +D+ 
  CCD25098.1 431 DKARETSlLDQRIKYIMTTLQGVDERACEQIINDIL--IMDEKIHWDDIA 478
                 333333345677777777777777766666665554..556666666665 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 6.9e-07
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqal 103
                 r++Ll Gp+gtGkt +a a++ e   +  f ++s+s + s  +  +e l++al
  CCD25098.1 509 RGMLLFGPPGTGKTMIAKAVATES--HSTFFSISASSLLSKYLGESEKLVRAL 559
                 89*******************995..467999***********9999999876 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.5       9.7   9.6e+03      67      91 ..     202     226 ..     165     239 .. 0.54
   2 !   18.9   0.1   1.4e-06    0.0014       8      88 ..     511     604 ..     507     684 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 9.7
      AAA_22  67 elkaerlsseellealeqalrarav 91 
                 e +a+  ++e+ ++++e  l++r++
  CCD25098.1 202 EVNAKLEQEERRRKKMECELERRRK 226
                 3333333333333444433333333 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1.4e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.............erpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalra 88 
                 ++++G++GtGKT+ ++ ++ + +   +                + ++ +f+ ++ ++ s  +l e+ + l+ + ++e+ ss+++ + l  ++++
  CCD25098.1 511 MLLFGPPGTGKTMIAKAVATESHSTFFSISassllskylgeseKLVRALFYMAKRLSPSIIFLDEIDSLLTTRSDNENESSRRIKTELLIQWSS 604
                 689******************9888777779999999999555445555888888888888899999999998888777777777555555444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   9.3e-06    0.0092      25      43 ..     511     529 ..     508     535 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 9.3e-06
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +ll+GppG+GKtm+ak+++
    CCD25098.1 511 MLLFGPPGTGKTMIAKAVA 529
                   89*************9875 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   7.2e-05     0.072      24      49 ..     507     533 ..     499     549 .. 0.79
   2 ?    0.5   0.0      0.71   7.1e+02     122     147 ..     554     579 ..     551     600 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.2e-05
      AAA_16  24 p.elvllsGesGvGKsslvrellrale 49 
                 p + +ll G++G+GK+ ++++++++  
  CCD25098.1 507 PvRGMLLFGPPGTGKTMIAKAVATESH 533
                 45899****************997544 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.71
      AAA_16 122 llkrllallsrderplvlvlDdlqwa 147
                 +l r+l +++++ +p +++lD+++ +
  CCD25098.1 554 KLVRALFYMAKRLSPSIIFLDEIDSL 579
                 577778788888999********944 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1         6   5.9e+03      80     112 ..     122     155 ..     112     179 .. 0.63
   2 ?   -3.1   0.1       7.3   7.3e+03      86     126 ..     204     247 ..     194     255 .. 0.57
   3 !   15.6   0.0   1.2e-05     0.012       2      75 ..     511     577 ..     510     583 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 6
                 HHHHHHHHHHHSSEEE..-SSSEEE---...... CS
       AAA_5  80 evlnsLlslleerrllleeggelvkakndd.lle 112
                  +l+  +++l   +l+ ++++++ k++ ++ ++e
  CCD25098.1 122 TTLEYGNNILKLSQLWRNNSKKEKKKAMETkMIE 155
                 5555556777777777777777776666654444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 7.3
                 HHHHHSSEEE..-SSSEEE---.........-EEEEEESS--.- CS
       AAA_5  86 lslleerrllleeggelvkakndd.ller..frviatanpldrs 126
                 +  le+++++  ++  +   ++++ l+++   +vi ++ +++rs
  CCD25098.1 204 NAKLEQEERRRKKMECELERRRKQqLAKQkeKQVIVEGSEAYRS 247
                 55555555555555555555555555555677788777777744 PP

  == domain 3  score: 15.6 bits;  conditional E-value: 1.2e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------.G-SEEEEESGG CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar.egeilvlDEve 75 
                 +lL GppGtgK+++a+ +a    ++++ +  ++      l+ ++   ++ ++lv   ++ a r +++i++lDE++
  CCD25098.1 511 MLLFGPPGTGKTMIAKAVATESHSTFFSISASS------LLSKYL--GESEKLVRALFYMAKRlSPSIIFLDEID 577
                 79**************99887777777655444......555555..4444555555554444677777777776 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0     2e-05      0.02      49     116 ..     510     575 ..     506     590 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrved.LveelkrarrdgklaralkrllkvdllilDd 116
                 +++l+Gp+G+GK+ +a a+++e   + +s++   ++  L + l   ++  ++   +++ l ++++ lD+
  CCD25098.1 510 GMLLFGPPGTGKTMIAKAVATESHSTFFSIS---ASSlLSKYLGESEKLVRALFYMAKRLSPSIIFLDE 575
                 579***************9988655544443...33303333444444444445555555555666665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4      0.94   9.3e+02      78     104 ..     213     239 ..     186     239 .. 0.82
   2 !   11.9   0.0   0.00012      0.12      34      60 ..     509     535 ..     489     577 .. 0.82
   3 ?   -1.0   0.0       1.1   1.1e+03      11      39 ..     644     672 ..     636     674 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.94
       AAA_7  78 lqdiiesklekrrkgvygPpggkklvv 104
                  ++ +e +le+rrk+ +  +++k+++v
  CCD25098.1 213 RRKKMECELERRRKQQLAKQKEKQVIV 239
                 46779999*********9999999886 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00012
       AAA_7  34 kpvllvGptGtGKtviikdllkkldke 60 
                 + +ll Gp GtGKt+i+k + ++ +++
  CCD25098.1 509 RGMLLFGPPGTGKTMIAKAVATESHST 535
                 679***************977766633 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.1
       AAA_7  11 eilVptvdtvrysyllelllknkkpvllv 39 
                 ++++p  d+    y l++l++++k++l v
  CCD25098.1 644 RLYIPLPDSETRLYHLKKLMSSQKNILTV 672
                 5789999999999*************987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2       0.2     2e+02      21      70 ..     117     164 ..     110     173 .. 0.77
   2 ?   -2.0   0.7       3.9   3.8e+03      70      70 ..     201     201 ..     163     241 .. 0.53
   3 ?    8.9   0.1    0.0017       1.7       4      26 ..     513     535 ..     511     555 .. 0.83
   4 ?    2.5   0.0      0.15   1.5e+02      11      37 ..     616     643 ..     615     668 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.2
      AAA_28  21 argypvvpEaareileeklakgedalpwvedllafaervleeqleeeaaa 70 
                 ++++p+  E++  il+  +  +++++++ e++ a++ +++ee++++ ++a
  CCD25098.1 117 DKKTPTTLEYGNNILKLSQ-LWRNNSKK-EKKKAMETKMIEEEVAQIKEA 164
                 45899999******96665.44444666.58999**9****999998887 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.9
      AAA_28  70 a 70 
                 +
  CCD25098.1 201 T 201
                 2 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0017
      AAA_28   4 itGgestGKTtlleaLaargypv 26 
                 ++G+++tGKT +++a a + +++
  CCD25098.1 513 LFGPPGTGKTMIAKAVATESHST 535
                 89**************9775554 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.15
      AAA_28  11 GKTtlleaLaargypvv.pEaareilee 37 
                 GK+  +  Laa++ p+   Eaar+ +++
  CCD25098.1 616 GKSNNVLLLAATNLPWAiDEAARRRFSK 643
                 9**************999*****97765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.9       2.5   2.5e+03      35      35 ..     134     134 ..      40     187 .. 0.59
   2 ?   -2.6   3.2       7.4   7.4e+03      64      64 ..     185     185 ..     123     248 .. 0.53
   3 ?   13.9   0.0   6.2e-05     0.062       2      69 ..     512     611 ..     511     660 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.5
      AAA_18  35 n 35 
                 +
  CCD25098.1 134 S 134
                 2 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.4
      AAA_18  64 l 64 
                 +
  CCD25098.1 185 I 185
                 1 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 6.2e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf..................................gvnlrdvakenglllevdpealdeskrldedkldklldalee 66 
                 ll G+pG+GKt +ak+++ + ++                                  +++  d +    +  +++++  ++s+r++++ l +++++ ++
  CCD25098.1 512 LLFGPPGTGKTMIAKAVATESHStffsisassllskylgeseklvralfymakrlspSIIFLDEIDSLLTTRSDNEN--ESSRRIKTELLIQWSSLSKA 608
                 689**************666433456666666666667777777777777777766655555555555555555555..77777777777777777777 PP

      AAA_18  67 nss 69 
                 ++ 
  CCD25098.1 609 IPH 611
                 665 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00049      0.49      24      54 ..     499     529 ..     496     534 .. 0.81
   2 ?   -1.7   0.0       1.8   1.8e+03     137     176 ..     563     606 ..     550     609 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00049
      AAA_25  24 wlvkgllpagelallaGapgtGKttlaldla 54 
                 +l+kgl+      ll+G+pgtGKt++a  +a
  CCD25098.1 499 DLFKGLREPVRGMLLFGPPGTGKTMIAKAVA 529
                 57777777777789***********997666 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.8
      AAA_25 137 ieevegvrlvviDplsralgg...densnsd.v.galvealeria 176
                 +++   +  + +D ++++l     +en++s  + ++l+ ++ +++
  CCD25098.1 563 AKR-LSPSIIFLDEIDSLLTTrsdNENESSRrIkTELLIQWSSLS 606
                 444.34888999999997777643333333333677777766665 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00036      0.36       1      45 [.     514     561 ..     514     593 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00036
                 EE-TTSSHHHHHHHHHHHH..TEEEEEHHHHHHHHHHTT.TSHSSHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky..gfthlsaGdllreeakrg.glakarde 45 
                 +G+PG GK+ +++ ++ +    f  +sa++ll +   ++ +l++a  +
  CCD25098.1 514 FGPPGTGKTMIAKAVATEShsTFFSISASSLLSKYLGESeKLVRALFY 561
                 6**************988722455678899998766444245555555 PP

>> ASPRs  Ancylostoma-associated secreted protein related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3       2.7   2.6e+03      33      67 ..     124     158 ..     101     183 .. 0.51
   2 ?   12.5   4.0   0.00014      0.14       4      80 ..     186     262 ..     180     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.7
       ASPRs  33 lkYdCeLEklaglllkdpekakvykeslgffelkf 67 
                 l+Y  ++ kl +l  ++ +k+k+  ++++++e++ 
  CCD25098.1 124 LEYGNNILKLSQLWRNNSKKEKKKAMETKMIEEEV 158
                 44444444444444444444444444444433333 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00014
       ASPRs   4 lgkyalrkevrelLvkevsekkskkdskllkYdCeLEklaglllkdpekakvykeslgffelkfeeekeaglkvkqf 80 
                 ++k++l+ ++++++ +ev++k +++++   k +CeLE+  ++ l ++++++v+ e  + +++++++  ++ +++k++
  CCD25098.1 186 QNKKMLELKIKDQVETEVNAKLEQEERRRKKMECELERRRKQQLAKQKEKQVIVEGSEAYRSSRSKSPSPPIRTKTL 262
                 4678888999*********9999988899999**********9*9999999****9999999998777766666655 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   6.8     0.011        11     242     331 ..     127     215 ..     124     247 .. 0.75
   2 ?    0.2   0.0      0.24   2.4e+02     225     294 ..     670     742 ..     619     750 .. 0.71

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.011
                  SHHHHHHTTT-......-TT--EEEECSTTS-....HHHHHHHHHHHTTTSBHHHHHTTTS-HHHHHHHHHC..TTT-TTBGGG--HHHHH CS
  HI0933_like 242 GpailqlSsyvakalekkeeetleidllPdldae.elkaalekekekeskkslknalaellpkrlvevlleealieeedkklaqlskkelk 331
                  G  il+lS+ ++++ +k++++ +e +++ +  a+ + +++le+e+ k  +++l++   e+ +k+++e  ++++  +e ++kl+q +++ +k
   CCD25098.1 127 GNNILKLSQLWRNNSKKEKKKAMETKMIEEEVAQiKEARRLEEER-KIRENKLQQERIEIQNKKMLELKIKDQVETEVNAKLEQEERR-RK 215
                  789************************988764413344566666.55668999999999******9999995555555555554333.33 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.24
                  TTEEEEEEEEE-SSEEESHHHHHHTTT-.........-TT--EEEECSTTS-...HHHHHHHHHHHTTTSBHH CS
  HI0933_like 225 kkatekgellfThrGlsGpailqlSsyvakale...kkeeetleidllPdldaeelkaalekekekeskkslk 294
                   +++ ++ + +++ G+sG+ i +l + +a +       e  + + d + ++++++ ++al++ k++ sk+sl+
   CCD25098.1 670 LTVSDFKIISIATEGFSGSDITALAKEAAMEPIrdlGDELMNTNFDTIRGVSKQDFDTALSTIKKSVSKESLS 742
                  44556677789999*******9999988655433333444455677888999999999999999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2232  (0.124491); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.87u 0.33s 00:00:01.20 Elapsed: 00:00:00.49
# Mc/sec: 4636.48
//
Query:       CCD25099.1  [L=495]
Description: hypothetical protein NDAI_0E02820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-32  112.7   8.2      3e-32  112.1   8.2    1.3  1  UCH            Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
       0.52   10.1   3.2         16    5.4   0.7    3.0  2  A2L_zn_ribbon  A2L zinc ribbon domain


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   8.2   3.3e-36     3e-32       1     257 []      74     492 ..      74     492 .. 0.79

  Alignments for each domain:
  == domain 1  score: 112.1 bits;  conditional E-value: 3.3e-36
                 -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH..SH-CCEE--HHHHHHHHHHSGGGTSSST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell..kskskavsPkklkktlsklaksfsgykq 97 
                 +Gl+N+ n C++ns+lQ+L+ + +++ yl+s+ ++ +e++n  +      l+    l+k+l++ ++el+     s+++s + +++t++++ k   + +q
  CCD25099.1  74 MGLINARNDCFINSSLQALVPLSSFTVYLNSILSKLQEDKNL-S------LP----LHKNLAKTVYELQklIVDSESYSAELIISTMEHIFKGTISRQQ 161
                 59*****************************76555555544.2......23....555555555555544346899***************9889*** PP

                 CEHHHHHHHHHHHHHHHHCC......................................................HCCCHHHHHHCCCTTSHHHHHH-EE CS
                 xxxxxxxxxxxxxxxxxxxx......................................................xxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  98 qDaqEflaflLdqlhedlnr......................................................evaeekwkkhlkrndslitdlfegq 142
                 +Da+Ef++ lL++l ++l                                                        +                        
  CCD25099.1 162 NDAHEFTQLLLETLFKELAVlpkgvievpmkgvvgnhlicircghisqikeemfsiyelnvpqcssskltdiihN------------------------ 236
                 ******************999*************99999999999996544444444444444443333333330........................ PP

                 EEE.....................................................................................EEEEEEB-SEE CS
                 xxx.....................................................................................xxxxxxxxxxx RF
         UCH 143 lks.....................................................................................klklkrlPeiL 156
                   +                                                                                     k +l ++P++L
  CCD25099.1 237 --NqlekiegysclyceinmilknenyrnsdgftgddeekrklrylkevflnnlminqelpddimhyiksykrgycdiskmeksdifrKRRLLQCPKVL 333
                 ..34445666666666666666667777777777777777777777777777777788888888888888999**************9*********** PP

                 EEEEESEEETEE.EEE--SEEB--SEEE-G...........GGBSS-BTTS-TCS-BEEEEEEEEEESCTTSEEEEEEEE......CTTTTE....... CS
                 xxxxxxxxxxxx.xxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxx....... RF
         UCH 157 iihlkRfsynss.ksKlntkvefpeeldls...........sylaeekkkkteekkkYeLiavvvHsGslssGHYvayik......nekngk....... 230
                 +ihl+R  yn    +++ ++vef+  l+l+           +++      + ++k +YeL ++v H+Gs+ +GHY +y+       n++ng+       
  CCD25099.1 334 LIHLSRSMYNGMaYTRNPCNVEFENILELEeeqmlqsspgeKTFI-----NSNSKIRYELKSLVKHTGSHYQGHYQCYRHkpklriNKENGEiinrssv 427
                 ************************988888444444333322222.....2233445********************9884444444444449****** PP

                 ....................................EEEEETTEEEEE-HHCCCTT...CEEEEEE CS
                 ....................................xxxxxxxxxxxxxxxxxxxx...xxxxxxx RF
         UCH 231 ....................................WykydDetvkevkeeeevls...sayiLfY 257
                                                     ++k++D++++e++ + +vl+   s+y+L+Y
  CCD25099.1 428 idnnllkddevevevkeentvpsqsfkkiksvetypFWKLSDTSIEESTVK-KVLNekkSVYMLYY 492
                 *************************************************88.7888899******9 PP

>> A2L_zn_ribbon  A2L zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1    0.0057        51      21      32 ..     198     209 ..     196     210 .. 0.82
   2 ?    5.4   0.7    0.0018        16       5      22 ..     246     262 ..     244     263 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0057
  A2L_zn_ribbon  21 ylvCieCgasfp 32 
                    +l+Ci Cg + +
     CCD25099.1 198 HLICIRCGHISQ 209
                    899*****8876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0018
  A2L_zn_ribbon   5 vCsvCggngilnseqgyl 22 
                     C +C  n+il ++ +y+
     CCD25099.1 246 SCLYCEINMIL-KNENYR 262
                    599********.**9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3290.61
//
Query:       CCD25100.1  [L=184]
Description: hypothetical protein NDAI_0E02830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       819  (0.0456802); expected 358.6 (0.02)
Passed bias filter:                      293  (0.0163422); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1279.84
//
Query:       CCD25101.1  [L=730]
Description: hypothetical protein NDAI_0E02840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-17   63.1   3.1    7.3e-17   61.5   3.1    1.9  1  VPS9      Vacuolar sorting protein 9 (VPS9) domain
  ------ inclusion threshold ------
       0.58   10.3   6.1        0.1   12.8   0.5    2.6  3  Nmad5     Nucleotide modification associated domain 5
        8.7    6.4  11.6       0.35   10.9   3.0    2.8  3  STATa_Ig  STATa Immunoglobulin-like domain


Domain annotation for each model (and alignments):
>> VPS9  Vacuolar sorting protein 9 (VPS9) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   3.1   1.2e-20   7.3e-17      14     102 ..     405     488 ..     389     490 .. 0.88

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 1.2e-20
        VPS9  14 a.ksPreKlkcllrtieeiteavskseegeslgaDdlLPiliyviikssppnlysnvqfikrFrsktllegeegYylttleaavefiesl 102
                 +  sP +K+++ll++++ +t        +e++++D++L++liy+iik + +++++n++fik Fr+k++l + e Y+lt++eaa+ fi+ l
  CCD25101.1 405 YsISPFDKIEILLKIHNLMTFY------NEEMSNDEFLSLLIYYIIKFNTKRIFLNIEFIKFFRYKKKLVENELYVLTNMEAALMFIDGL 488
                 3479************999955......59*********************************************************866 PP

>> Nmad5  Nucleotide modification associated domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.76   4.5e+03      61     141 ..     166     250 ..     161     258 .. 0.68
   2 ?   -2.0   0.1       0.6   3.6e+03      73      96 ..     282     307 ..     254     367 .. 0.62
   3 ?   12.8   0.5   1.7e-05       0.1      43     136 ..     620     709 ..     612     723 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.76
       Nmad5  61 eklqsklpkeglstnkpkstgsvidvnlaGarvelyfng....kkletvvlasvdeiaketkslpkvvleadnplvkrfdeleka 141
                 e+l+s l++ + +++++ ++g+ i+ n +G +++ ++++    ++ ++    +++ +  +++++p ++l   +++ k+++ ++  
  CCD25101.1 166 ESLSSGLSGIFSRSRSSSGSGNSIGNNNNGTTRRQRRSSslfsMGPNIINNNNNNNNNNSNNHRPPQQLLSPEEINKQLKVNKLN 250
                 5677778888888888888888888888888776666665666666666666666666666666666666666666666666555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.6
       Nmad5  73 stnk.pkstgsvidvnla.Garvely 96 
                 +t + +++t++ + +n + + r++l+
  CCD25101.1 282 NTTSnSNNTNNLYSANTNiNTRINLR 307
                 44444666666666666655544443 PP

  == domain 3  score: 12.8 bits;  conditional E-value: 1.7e-05
       Nmad5  43 alggkkteaalreiikeieklqsklpkeglstnkpkstgsvidvnlaGarvelyfngkkletvvlasvdeiaketkslpkvvleadnplvkrfd 136
                 ++ g +t+++++++++++e++   ++ke+  tn+p+++ ++  ++++G+ + l  n   ++ +++ +++  ++ ++s++   ++ad +  k +d
  CCD25101.1 620 KINGDETTNDVDKEKQQVEEDNTSIEKELSLTNSPEKKVRTKTIKISGSNMSLHSNI-TSSDDMITNISSSSSLPSSNE---IPADWKKFKDLD 709
                 567999*******************************************99999999.666666666666666666666...777755555544 PP

>> STATa_Ig  STATa Immunoglobulin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3      0.18   1.1e+03      52     118 ..     281     345 ..     268     347 .. 0.75
   2 ?   -2.8   0.0         1     6e+03      38      87 ..     540     587 ..     535     596 .. 0.56
   3 ?   10.9   3.0   5.8e-05      0.35      51     118 ..     624     693 ..     610     694 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.18
    STATa_Ig  52 ktlsKeksskktlekdtevldesklvakfklkflvgtRkksvnLrFavevkesdgaktnveSepsnP 118
                 k+++ +++++++l +++ ++++   + +fk+   +  R ++  +++  +++e+ +   ++ S  s+P
  CCD25101.1 281 KNTTSNSNNTNNLYSANTNINTRINLREFKVV--NLFRNSPEFIQYDRALNEKINCLSTLLSTSSSP 345
                 45666677788999999999998888888754..445777877888888877777777888877777 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1
    STATa_Ig  38 qavskvkAelvves.ktlsKeksskktlekdtevldesklvakfklkflvg 87 
                 +++   kA l++++  +   ++++ ++++   + +  s+   +fk +f  +
  CCD25101.1 540 RITESAKALLINDNnFNFLDQSTNITSVN---QDVLRSNSYGRFKTIFDSS 587
                 55566788888888333444444444444...4444455555666666555 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 5.8e-05
    STATa_Ig  51 sktlsKeksskktlekdtevldesklvakfk.lkflvgtRk.ksvnLrFavevkesdgaktnveSepsnP 118
                 ++t++  ++ k+++e+d+ +++++  +++ +  k+ + t k + +n+    ++++sd+ +tn+ S+ s P
  CCD25101.1 624 DETTNDVDKEKQQVEEDNTSIEKELSLTNSPeKKVRTKTIKiSGSNMSLHSNITSSDDMITNISSSSSLP 693
                 3334444455788************99999978898888652679*********************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1384  (0.0771934); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5119.81
//
Query:       CCD25102.1  [L=346]
Description: hypothetical protein NDAI_0E02850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-59  200.1   0.0      4e-59  199.8   0.0    1.1  1  polyprenyl_synt  Polyprenyl synthetase


Domain annotation for each model (and alignments):
>> polyprenyl_synt  Polyprenyl synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.8   0.0   2.2e-63     4e-59       2     252 ..      33     289 ..      32     293 .. 0.90

  Alignments for each domain:
  == domain 1  score: 199.8 bits;  conditional E-value: 2.2e-63
                      HHHHHHHHHHHHSSS--HHHHHHHHHHHHHSCGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEETTEE-HHHCTCHHHHHHHHHHHHHHHH CS
  polyprenyl_synt   2 elleealeylveagGKrlRpllvllaaealkeeeeelekaavlawivellhaasLvhDDimDdsetRRGqpcahrlvGnklAindgdfllaraf 95 
                      + + +++++++ ++GKr+R+ l+  ++++++ ++   e++++l++i+e+lh++sL++DDi D+s++RRG+p+ h ++G+++++n++++++++++
       CCD25102.1  33 DTIARPYKHITLHQGKRFRSKLIQTFNKIYEIPN---EQLQILMEIIETLHNSSLIIDDIEDNSDLRRGNPSSHVVFGMPMSLNTANYMYFKSM 123
                      568899*************************776...7899***************************************************** PP

                      HHHHHHH..STT.HHHHHHHHHHHHHHHHHHHHHHHHTTTTTCC......C.SHHHHHHHHHHHTHHHCHHHHHHHHHHTTHHHHHHHHHHHHH CS
  polyprenyl_synt  96 ellaklf..eks.lellelfsevllqtveGqlldleeekdddls......kfsleeyleivkyKTaylfalpvalaallagasdeelealkdig 180
                      +l+ k+   ++s lell++f+e+l+++++Gq+ld++++  d+l+       ++++ y ++v +KT++lf+l ++++  ++   +++ ++l  +g
       CCD25102.1 124 NLIWKMSadQTSiLELLQIFNEELMNLHRGQGLDIHWR--DSLNelrydgVPNEQMYFKMVMNKTGGLFRLTIRMMEKISPNFNRKKKTLVPLG 215
                      ******9976669**********************999..3444445777899***************************9778889******* PP

                      HHHHHHHHHHHHHHHHHS-HHHHSS-TSHHHHTT---HHHHHHHHCT-..HHHHHHHHHHTTSSHHHHHHHHHH CS
  polyprenyl_synt 181 lelGlaFQiqDDylDlfgdpevlgKpagtDiqegkctlpilkalelas..peqrkvlkeilgkkaekeedvkea 252
                      + lG+++Qi+DDy +l++++   +K +++D++egk ++pi++ l+ +s  +    +l +il k+++++e +k a
       CCD25102.1 216 NLLGIIYQIRDDYQNLVNNTMIANKGFAEDLSEGKLSFPIIHGLRFESlnNVSGPTLLNILLKRTDDDELKKVA 289
                      ********************************************955511334568888888888766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2674.73
//
Query:       CCD25103.1  [L=344]
Description: hypothetical protein NDAI_0E02860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1148  (0.0640303); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2636.88
//
Query:       CCD25104.1  [L=216]
Description: hypothetical protein NDAI_0E02870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-36  126.3   5.3    1.6e-36  126.0   5.3    1.1  1  DUF3605         Protein of unknown function (DUF3605)
  ------ inclusion threshold ------
      0.073   12.0   0.4      0.099   11.6   0.4    1.2  1  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin


Domain annotation for each model (and alignments):
>> DUF3605  Protein of unknown function (DUF3605)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.0   5.3   1.8e-40   1.6e-36       1     153 []      14     192 ..      14     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 126.0 bits;  conditional E-value: 1.8e-40
                 -HHHHHHHHHHT-GGG----HHHHHHHHHHHHHHT...TS-HHHHHHHHHT-............STTS............TTSSGGGEEEEE-SS---B CS
     DUF3605   1 tWeevkeiieeneleklkRspsdlrrYlkfkkelkkkygsiveyilkerlkW........eeleakeel...........pfadeedykillNdfPYgl 80 
                 tW+evk++i+++el  l+Rs+ ++++Y+ +kk++    +  +++++ ++l+W        +      ++           +f+d++ +k+ +NdfPY++
  CCD25104.1  14 TWKEVKQYINSGELYMLRRSELQNTDYQIHKKKFV---NVDMAQFMLDKLGWkseelqklN------DIvyntdekringAFKDKSLFKLAVNDFPYYF 103
                 7******************************9998...88999999******554333321......22333344455667****************** PP

                 -TTEEEEEEEESS---TT-SS................HHHHHHHHHHHHHHHTHHH......HT-EEEE---TTT-SSTTSEEEEEEEE CS
     DUF3605  81 eedivHlvvWskteleedeetg...............dlteesrakieefvkktfveklee.edkvlwFkNwasLqSvkaveHiHvllr 153
                 e+d+ H+++Wsk++l+ +++++               ++++ +++ i++f+k+t+++k+ + e++++wF+N+ +LqS++av+HiH++++
  CCD25104.1 104 EPDVIHVLIWSKIKLPIYKTDKktsdvkigdpnnnfpEFNKPMKKVIASFLKHTITDKYCItEENYCWFINYVNLQSIQAVSHIHLIIK 192
                 ****************999886678999******************************99899***********************985 PP

>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   1.1e-05     0.099      93     163 ..       5      76 ..       1      79 [. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 1.1e-05
  Hyphal_reg_CWP  93 eesltassyklvg.asFeNnGelylagsgsvvastmeitsnsweNnGlivfyqsqrssgtvklgaalgsitN 163
                     +++ ++ ++++   +++ N+Gely+  ++++ ++ ++i  +++ N ++ +f  ++   ++ +l++ +  + N
      CCD25104.1   5 TNNIAKKVITWKEvKQYINSGELYMLRRSELQNTDYQIHKKKFVNVDMAQFMLDKLGWKSEELQKLNDIVYN 76 
                     55566677777555999*************99****************999999988888888765555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1617.86
//
Query:       CCD25105.1  [L=352]
Description: hypothetical protein NDAI_0E02880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-05   22.1   9.3    0.00011   21.7   9.3    1.3  1  CorA       CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
      0.042   14.1   0.4       0.19   12.0   0.3    2.2  2  PhetRS_B1  Phe-tRNA synthetase beta subunit B1 domain


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   9.3   1.2e-08   0.00011      99     290 ..     111     321 ..      55     328 .. 0.69

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 1.2e-08
        CorA  99 k.......deggkpkspgellyrlldeivdrlfellekleeeldeledeledstkkeilrelaqlrrrlvkl..........rralapnrevlkrlla. 179
                 k        +++  +  ++ l++++ + + +l  +++ l +  + + + le++++++ lr l+   ++l  +           + l+++ ++l +++  
  CCD25105.1 111 KnqtdssgLKQDPLPYEFRALEAIFISALSNLTSEMKVLLTVSQGILQDLENNITRDRLRFLLVQNKKLSIFckkatlvremIDDLLEQDDILCSMYLt 209
                 344555554456666677777788888888888888888888888888888888888888888888888777444444444444444455555443335 PP

        CorA 180 .kaddkllddedkey....lrdlldelerllemlealrerleslqdtyssllserlNrvmkvL..TvltaiflPlTl.itGiyGmNfkglPelewsygy 270
                  ++++k  +++d+      l++ +++++ +++++e+  + +    ++++ +l+ + N++m +    +l+++ +   l +++iyGmN +     e+syg+
  CCD25105.1 210 dNNFGKARTEDDHTEiemlLETYHNHIDEIVQKSENAISNVKTTEEIINIILDSNRNQLMLLGlrFSLSMLSMGIVLyVGSIYGMNLN-NFIEESSYGF 307
                 66667777766665534448888899999*******************************863333344444444445**********.6778999944 PP

        CorA 271 pfvlllglmallailllfwf 290
                 +      ++a+l++l+++w+
  CCD25105.1 308 A------STAILSTLCMIWI 321
                 4......5555555555554 PP

>> PhetRS_B1  Phe-tRNA synthetase beta subunit B1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   2.1e-05      0.19      14      68 ..     212     269 ..     199     280 .. 0.82
   2 ?   -3.3   0.0       1.3   1.1e+04      31      43 ..     292     304 ..     291     315 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
   PhetRS_B1  14 algkeltee...eledllfefGlElDeiveeeekkkadkkseeviykidipAnryDLL 68 
                 ++gk  te+   e+e ll  +   +Deiv+++e++ ++ k++e+i+ i   +nr  L+
  CCD25105.1 212 NFGKARTEDdhtEIEMLLETYHNHIDEIVQKSENAISNVKTTEEIINIILDSNRNQLM 269
                 5665544432227899999**************999******************9986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.3
   PhetRS_B1  31 fGlElDeiveeee 43 
                 +G+ l +++ee+ 
  CCD25105.1 292 YGMNLNNFIEESS 304
                 8999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       882  (0.049194); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2603.65
//
Query:       CCD25106.1  [L=155]
Description: hypothetical protein NDAI_0E02890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-18   66.4   0.0    3.2e-18   65.7   0.0    1.4  1  Glutaredoxin  Glutaredoxin


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   1.8e-22   3.2e-18       1      60 []      45     112 ..      45     112 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 1.8e-22
                   EEEEES.....TSSHHHHHHHHHHHHTTGG...EEEEEGCCSHHHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin   1 vvlftk.....ptCpyCkkakrlLkelgvk...feeidvdkdeeireelkelsgvrtvPqvfidgkhv 60 
                   vvlf+k     p C+++k++++lL ++gv+   f+ ++v++d+e+r+++ke+++++t+Pq+f++ ++v
    CCD25106.1  45 VVLFMKgtpefPKCGFSKATIQLLGQQGVDpakFAAYNVLEDPELRDAIKEFTEWPTIPQLFVNKEFV 112
                   89**************************88777********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1280.58
//
Query:       CCD25107.1  [L=500]
Description: hypothetical protein NDAI_0E02900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.7e-172  574.1   0.2   1.9e-172  573.9   0.2    1.0  1  Aldedh           Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.032   15.1   0.1        0.2   12.5   0.1    2.3  2  GramPos_pilinBB  Gram-positive pilin backbone subunit 2, Cna-


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  573.9   0.2  2.1e-176  1.9e-172       2     462 .]      35     496 ..      34     496 .. 0.98

  Alignments for each domain:
  == domain 1  score: 573.9 bits;  conditional E-value: 2.1e-176
                 ET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH..HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
      Aldedh   2 veses.etievinPatgeviakvpaataedvdaavaaAkeafk..awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvl 97 
                 ++s++ +t +  nP+t+e+i++v+++t+edv+ av+ A++af   +wa+ +++ Ra++L+k+ad++e+++e +a +et+++Gk+l+ +r++v+ +i+++
  CCD25107.1  35 IKSQDyKTTKIENPSTQEIICEVASGTPEDVEYAVQCAENAFFntEWATQDPKVRARYLNKLADVIESEQELMASIETADNGKTLELSRGDVSIVINCI 133
                 677777889*******************************998789***************************************************** PP

                 HHHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCH CS
      Aldedh  98 ryyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsev 196
                 r +a++a+k++g+++ + +g+++++++eP+Gv+g+I+PWNfPl+++awk+apala+GN+v+lKPa  tpl al++a l++++g+P+gv+n+++g+g+++
  CCD25107.1 134 RDAASYADKINGRTIDTGDGYMNFTMKEPIGVCGQIIPWNFPLMMLAWKIAPALAMGNVVILKPAAVTPLNALYFASLCKRVGIPAGVVNIIPGPGRSL 232
                 *****************77******************************************************************************** PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHHHH.CTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHH. CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiakaaa.knlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaa. 293
                 g+a+++hp+++k +ftGstevg++ia +a+ +nlk++tlElGGk++++v++da ++k++ ++v+g+f naGQ+C+++sr++vqe+iyde++++++e + 
  CCD25107.1 233 GAAITTHPKIRKAAFTGSTEVGKDIAMRASeSNLKKITLELGGKSAHMVFDDAIIEKTLPNLVNGIFKNAGQICSSGSRIYVQEGIYDELLAAFKEYId 331
                 *************************9995559******************************************************************6 PP

                 HT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHS CS
      Aldedh 294 kklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNd 392
                 +++kvgdp+++d+  G++++++q++++ ky++ +k+egak+l+Gg   e+  +kgyf++Ptv+ +v++dmri++eE+FGPV+++ kfk++ee +++aNd
  CCD25107.1 332 NTIKVGDPFNPDNFQGAITNKEQYNTILKYIDIGKDEGAKILTGG---ETVGDKGYFIRPTVFYDVNEDMRIVKEEVFGPVVTISKFKTIEEGVAMAND 427
                 677******************************************...7789*********************************************** PP

                 SSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 393 teyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 +e+GL+ag+ t+++++a+rva+ l+aG+v+iN++++++    pfgGvkqSg+Gre+g+e++e ytevk+v
  CCD25107.1 428 SEFGLGAGIETENISTALRVAKMLKAGTVWINTYNDFDSRV-PFGGVKQSGYGREMGEEVYECYTEVKAV 496
                 *****************************************.**************************97 PP

>> GramPos_pilinBB  Gram-positive pilin backbone subunit 2, Cna-B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.2e-05       0.2      27      74 ..      15      61 ..       2      95 .. 0.76
   2 ?   -1.3   0.0      0.41   3.7e+03      92     113 ..     280     301 ..     246     302 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
                     EE-TTEEE-TTT--EEEETT--TTTSEEEEEEE-TTS-EEEEEEE-H. CS
  GramPos_pilinBB 27 tlskGLtynedvkvkvdekdvvkdtdytvaekedgktlevevanlkkl 74
                     tl +GLty++ + ++++++  +k +dy+ ++ e+  t e++++    +
       CCD25107.1 15 TLPNGLTYDQPTGLFINNEF-IKSQDYKTTKIENPSTQEIICEVASGT 61
                     7889************9987.****************99998876644 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.41
                      EE-TTS-B-SSEEEEEEEEEES CS
  GramPos_pilinBB  92 tlNenAvienenkNdvkLeYsN 113
                       + ++A+ie++ +N v+  + N
       CCD25107.1 280 MVFDDAIIEKTLPNLVNGIFKN 301
                      5779999999999988776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3647.12
//
Query:       CCD25108.1  [L=441]
Description: hypothetical protein NDAI_0E02910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-44  149.0   0.1    1.4e-43  148.4   0.1    1.3  1  NIF       NLI interacting factor-like phosphatase


Domain annotation for each model (and alignments):
>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.1   7.5e-48   1.4e-43       1     155 [.     211     357 ..     211     358 .. 0.96

  Alignments for each domain:
  == domain 1  score: 148.4 bits;  conditional E-value: 7.5e-48
         NIF   1 ktLVLDLDetLvhsklekskklkvegekvevsvlkRpgldefLkelsklyevvifTasseeyaeavidildpekkllshrlyrescvkkkgeyvKdLsl 99 
                 +tLVL L+++Lvhs++          +k++++ +kRpg+d+fL +ls++ye+v+f+++++ y e++ ++ldp ++++s+ l++e+cv k+g ++KdLs+
  CCD25108.1 211 LTLVLTLEDLLVHSEW---------SQKYGWRTAKRPGVDYFLGYLSQYYEIVLFSSNYMMYGEKIAEKLDPLHAFISYSLFKEHCVYKDGVHIKDLSK 300
                 69*************9.........999**********************************************************988********** PP

         NIF 100 lgrdlsrvvivDdspdsfelqpengipiksffsdkkDneLlkllpllkela..kvddv 155
                 l+rd ++v+i+D +p++++lqpen+ip++++ ++  D++Ll+l+p+l+ la  +vddv
  CCD25108.1 301 LNRDVNKVLIIDTDPNNYKLQPENAIPMEPWKGE-ADDKLLRLIPFLEYLAtqQVDDV 357
                 *******************************965.666799*******9998677998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1132  (0.0631379); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3169.68
//
Query:       CCD25109.1  [L=316]
Description: hypothetical protein NDAI_0E02920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00012   22.4   0.0    0.00067   20.0   0.0    2.1  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   3.8e-08   0.00067       4      41 ..      14      50 ..      11     150 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 3.8e-08
  Pro_isomerase  4 ietsskGrivieLfadkaPktvenFlklvkegfYdgtt 41
                   i t  kG +++eL a + Pkt+++Fl+l+ +g +++++
     CCD25109.1 14 IVTT-KGVLQVELWAHEIPKTCRKFLQLCLNGSFEKCQ 50
                   5664.9************************99776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2285.70
//
Query:       CCD25110.1  [L=249]
Description: hypothetical protein NDAI_0E02930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-75  250.5   4.9    1.1e-74  250.2   4.9    1.1  1  VPS28     VPS28 protein
  ------ inclusion threshold ------
      0.012   15.7   0.7       0.16   12.1   0.1    2.5  2  DUF4363   Domain of unknown function (DUF4363)


Domain annotation for each model (and alignments):
>> VPS28  VPS28 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.2   4.9   1.2e-78   1.1e-74       1     189 []      46     248 ..      46     248 .. 0.98

  Alignments for each domain:
  == domain 1  score: 250.2 bits;  conditional E-value: 1.2e-78
       VPS28   1 LaelysiivtleklEkaylkdaitekeYtstcnrLlsqyktilkdeevkkefksleeFvkkykldcpaAlkRlkegvpatveh................ 83 
                 L+e+ysii+tl+++Ekayl+d+it+++Yt+t+n+Ll+qykt+l++e+v+k+f+sl++F++++++ +++A++Rl++g+p+tveh                
  CCD25110.1  46 LSEIYSIIITLDHVEKAYLRDSITSSQYTNTVNKLLAQYKTYLSNEDVSKAFQSLNDFKTRFNIVASNAITRLERGIPVTVEHaieedveedessetqg 144
                 89**********************************************************************************************999 PP

       VPS28  84 akakkskekkesaklvaeatqnFITlmDalkLnlkakdqlhplLsdLveslnkleklekdfegksklvkWliklnkmkasdeLseeearqllfdlesaY 182
                  +++++k++k + k+vaeat+nFIT+mDalkLn++akdqlhplL++L+ s+n++  ++ dfe+++kl++W++k+nkm+ ++ Ls+++ar+llfdl+ aY
  CCD25110.1 145 GQNTNRKKGKFTGKNVAEATGNFITVMDALKLNYRAKDQLHPLLAELLLSINRV--TNVDFEHRKKLIEWIVKINKMDVNQDLSDNQARELLFDLDLAY 241
                 78888899999*******************************************..9****************************************** PP

       VPS28 183 kefyklL 189
                 k+fy+lL
  CCD25110.1 242 KSFYALL 248
                 ****987 PP

>> DUF4363  Domain of unknown function (DUF4363)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.045     4e+02      74      98 ..      37      61 ..      30      64 .. 0.79
   2 ?   12.1   0.1   1.8e-05      0.16      55     100 ..      69     114 ..      65     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.045
     DUF4363 74 ietedkeealaelaelkfllehike 98
                 +++++ e+l+e+ +++  l+h+++
  CCD25110.1 37 SQQRETIESLSEIYSIIITLDHVEK 61
                5677888999999999999999876 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.8e-05
     DUF4363  55 iehdeldeietslaklkayietedkeealaelaelkfllehikeke 100
                 ++++  + ++  la+ k+y+++ed + a  +l+  k+ ++ ++ + 
  CCD25110.1  69 TSSQYTNTVNKLLAQYKTYLSNEDVSKAFQSLNDFKTRFNIVASNA 114
                 67889999****************************9998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1232  (0.0687155); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1836.42
//
Query:       CCD25111.1  [L=488]
Description: hypothetical protein NDAI_0E02940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.016   15.6   1.8      0.046   14.2   0.1    2.7  3  DUF4179   Domain of unknown function (DUF4179)


Domain annotation for each model (and alignments):
>> DUF4179  Domain of unknown function (DUF4179)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.35   6.3e+03      78      89 .]     191     202 ..     190     202 .. 0.87
   2 ?   14.2   0.1   2.6e-06     0.046      50      77 ..     271     301 ..     239     310 .. 0.79
   3 ?   -2.9   0.2      0.56     1e+04      36      56 ..     406     423 ..     401     432 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.35
                 SSEEEEEEEEEE CS
     DUF4179  78 gnklivsysvks 89 
                 +++l +sys+++
  CCD25111.1 191 DKRLLISYSIEN 202
                 5799******96 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.6e-06
                 -...HHHHSEEEEEEEEETTEEEEEEEEEE- CS
     DUF4179  50 g...eqeyvkpvnksaednGitvtvnevvaD 77 
                 +   ++e ++pvn+ +++nGit++ n  v+ 
  CCD25111.1 271 KeniLKEVSTPVNQVVTNNGITFKTNVRVCS 301
                 145799*****************98866665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.56
                 --SS-HHHHT--SS-HHHHSE CS
     DUF4179  36 pvigslfeklsdskgeqeyvk 56 
                 ++i+++++k++++    +y+k
  CCD25111.1 406 KYIEQIIQKEKQTA---NYAK 423
                 67888888876644...4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1015  (0.0566122); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3673.41
//
Query:       CCD25112.1  [L=1512]
Description: hypothetical protein NDAI_0E02950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-64  215.5  46.7    1.2e-33  116.3  19.2    2.7  2  ABC2_membrane    ABC-2 type transporter
    5.4e-36  124.1   0.0    1.2e-17   64.7   0.0    2.5  2  ABC_tran         ABC transporter
    5.6e-33  112.7   5.2    1.1e-28   98.9   0.1    2.9  2  PDR_CDR          CDR ABC transporter
    8.1e-08   32.8   0.0    1.7e-07   31.7   0.0    1.5  1  ABC_trans_N      ABC-transporter N-terminal
    1.7e-07   31.3   0.1    5.6e-05   23.1   0.0    2.4  2  RsgA_GTPase      RsgA GTPase
    5.5e-07   29.0   2.5    5.5e-07   29.0   2.5    3.5  2  ABC2_membrane_3  ABC-2 family transporter protein
    1.1e-05   25.8   0.1     0.0044   17.4   0.0    2.7  2  AAA_16           AAA ATPase domain
     0.0003   20.8   0.1       0.63   10.1   0.1    2.5  2  MMR_HSR1         50S ribosome-binding GTPase
    0.00035   19.9   0.1       0.78    9.0   0.0    2.3  2  Zeta_toxin       Zeta toxin
    0.00047   20.5   0.4      0.083   13.2   0.0    2.9  2  AAA_22           AAA domain
    0.00056   19.4   0.0        2.8    7.3   0.0    3.1  3  SMC_N            RecF/RecN/SMC N terminal domain
    0.00067   19.3   0.3      0.098   12.4   0.1    2.7  2  AAA_29           P-loop containing region of AAA domain
    0.00097   19.7   0.0       0.04   14.5   0.0    2.6  2  AAA_18           AAA domain
     0.0024   17.8   0.0      0.085   12.8   0.0    2.6  2  NACHT            NACHT domain
     0.0025   17.4   0.4       0.06   12.9   0.1    2.2  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.005   17.0   0.0       0.44   10.7   0.0    2.5  2  AAA_33           AAA domain
     0.0063   16.9   0.0        2.1    8.8   0.0    2.7  2  RNA_helicase     RNA helicase
     0.0066   16.3   0.0        4.3    7.1   0.0    2.5  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0089   15.8   1.2       0.87    9.3   0.1    2.3  2  AAA_30           AAA domain
  ------ inclusion threshold ------
      0.017   14.7   0.1       0.28   10.7   0.0    2.3  2  AAA_25           AAA domain
      0.024   14.5   0.2         14    5.5   0.1    3.2  3  NTPase_1         NTPase
      0.037   14.5   0.1       0.56   10.6   0.0    2.4  2  AAA_17           AAA domain
      0.045   13.7   0.1        4.3    7.2   0.0    2.4  2  Ploopntkinase3   P-loop Nucleotide Kinase3
      0.069   13.1   1.0        0.2   11.7   0.1    2.1  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.096   12.4   0.2        2.2    8.0   0.1    2.4  2  AAA_24           AAA domain
       0.32   11.5   1.3       0.51   10.8   0.1    1.9  1  AAA_23           AAA domain
       0.41    9.8   1.1         11    5.1   0.0    2.5  2  NB-ARC           NB-ARC domain


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7  14.3     2e-34   1.3e-31       1     210 []     492     707 ..     492     707 .. 0.94
   2 !  116.3  19.2   1.8e-36   1.2e-33       1     207 [.    1161    1370 ..    1161    1373 .. 0.96

  Alignments for each domain:
  == domain 1  score: 109.7 bits;  conditional E-value: 2e-34
  ABC2_membrane   1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.....nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsply 91 
                    tq++ ++ r f++ ++d++++  + l + l+ +l++g++f n++     ++e++++r gllf  +lf ++++l+++  +++ +r++++++ ++ +y
     CCD25112.1 492 TQVYYCMIRGFQRVKGDSTYT-KVYLSSFLIKGLIVGSMFHNIDnkkqsTTEGAYSRGGLLFYVLLFASVTSLAEI-GNSFATRPIVVKHKSYSMY 585
                    699******************.99******************987777445555588*******************.99999************** PP

  ABC2_membrane  92 slsayvlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlasl.vllpllllsGffipids 184
                    + sa  l  +++e+pv +l++li+++++y++  l+++  +ff ++l+ll + +++s+++ ++++ +++  +a   +++  +l+l +++Gf+ p  +
     CCD25112.1 586 HISAESLQAIITEFPVKFLAILILSFVSYWIPVLKYEagAFFQYILYLLTVQQCTSFIFKFVATTTTDGVTAHATWGVyGFLILCIYAGFVLPMGQ 681
                    *******************************9999999899*******************************99996626999************* PP

  ABC2_membrane 185 mpkwlqwiaylnPltyavealrsnlf 210
                    m++w++wi+ +nPltya+e+l+s++f
     CCD25112.1 682 MHHWIKWIHFINPLTYAFESLMSTEF 707
                    *77********************997 PP

  == domain 2  score: 116.3 bits;  conditional E-value: 1.8e-36
  ABC2_membrane    1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysl 93  
                     tq k +l r++lq+wr+p+++  ++++++   al++g+ + +++++ +g++ +   +f+vl +a++++ ++ ++    r+++ +re +s+++++
     CCD25112.1 1161 TQMKCVLHRTYLQFWRSPVYI-RAKFLECGSCALFIGLSYLHVKHTVGGATAAFSSIFMVLIIALAMINQLHVFAYDSRELYeVREAASNTFHW 1253
                     588999************999.**********************9999999999999999999999999999999999**************** PP

  ABC2_membrane   94 sayvlakvlvelpvsllqalifllivyflvgldls...rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipids 184 
                     s+ +l ++lve  +++++ ++ ++++y++ g++ s   ++f+f++++l++ ++++s+gl+i  ++p++  as++ s ++  +ll++G++ p+++
     CCD25112.1 1254 SVLLLCHFLVECGWTMVCQFVCWICYYWPAGYNGSaphAGFFFFFYVLVFPIYFVSYGLWILYFSPDVPSASMINSNLFAAMLLFCGILQPKSK 1347
                     ***********************************99888****************************************************** PP

  ABC2_membrane  185 mpkwlqwiaylnPltyavealrs 207 
                     mp++++++++ +Plty+veal++
     CCD25112.1 1348 MPGFWWFMYRTSPLTYVVEALVG 1370
                     ********************987 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   4.2e-18   2.8e-15       2     136 ..     166     324 ..     165     325 .. 0.89
   2 !   64.7   0.0   1.8e-20   1.2e-17       3     137 .]     865    1014 ..     863    1014 .. 0.92

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 4.2e-18
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.................. 79 
                 +n +  ++ ge++ +vG+ GaG+StLlk+++g++ +    +G+  +dg d +e  +++++  + ++p+ +++fp++tv+e+                  
  CCD25112.1 166 QNCTGVVESGEMLFVVGRPGAGCSTLLKTISGETGDmveVQGDFSYDGLDQQE-MMSKYKGYVVYCPELDFHFPKITVKETidfalkcktprtridnmt 263
                 57777899*************************98877789999999999888.999*******************************99999998766 PP

                 ...HHHTCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ...esdeeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                    + d+  + + + +gl ++ +t+v+++  + +SgG+++rv+l++a +  ++++ +D++t
  CCD25112.1 264 rkeYVDSLRDLWCTVFGLRHTYATNVGNDFvRGVSGGERKRVSLVEAQAMGASIYSWDNAT 324
                 5543333377788899999999999998889****************************99 PP

  == domain 2  score: 64.7 bits;  conditional E-value: 1.8e-20
                  EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................HH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................xx RF
    ABC_tran    3 nvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................es 81  
                  +v   +k+g+++a++Ge+GaGK+tLl++la+  +     G++l++ k+l      s++++ g++ q +++  el+vre+                e+
  CCD25112.1  865 DVFGYVKPGKMTALMGESGAGKTTLLNVLAQRINMgvITGDMLVNAKPLPA----SFNRSCGYVAQADNHMAELSVRESlrfaaqlrqpnstpleEK 957 
                  566679**************************9987889999999999888....9***************************99999999988666 PP

                  HTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran   82 deeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137 
                   e +ek+++ lg+++ ++  v++ ++ L   q++++++   l+ kp+lll lDEpt+
  CCD25112.1  958 MEYVEKIITLLGMQNYAEALVGKTGRGLNVEQRKKLSIGVELVAKPSLLLfLDEPTS 1014
                  666******************************************9987549***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.1   1.7e-31   1.1e-28       1      89 [.     718     806 ..     718     808 .. 0.99
   2 !   13.5   2.0   7.7e-05     0.051      37      71 ..    1433    1467 ..    1429    1480 .. 0.84

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 1.7e-31
     PDR_CDR   1 vPsgpgyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlvfkrgkap 89 
                 +Psgpgyenvs +n++C+++Gav+Gq yV+Gd+Y+++s+++ ++h wr +gi i++++f+++l+++++e+ +  + +g+ l++krg++p
  CCD25112.1 718 IPSGPGYENVSIANQICNSAGAVKGQLYVNGDAYIDKSYHFGYDHAWRSWGINIVWTFFYIVLNVILSEYSKPLAAGGDLLLYKRGHMP 806
                 8**************************************************************************************98 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 7.7e-05
     PDR_CDR   37 lsfgyssshlwrnfgiliaflifflalyllateli 71  
                  ++f+ +++h+wr+fg ++ ++ f +++ l +  ++
  CCD25112.1 1433 ARFDVKWHHRWRDFGFMWIYICFNIFAMLACYYIM 1467
                  589*****************999888887766555 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   2.6e-10   1.7e-07      19      78 ..      66     135 ..      42     138 .. 0.68

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2.6e-10
  ABC_trans_N  19 s........e....sssedeeeedseFdlekwlknlreridrdgikprklGVvFknLtVeGvgsgadyqpTv 78 
                  +        +     ++ + +e   +Fdl+  l  lr r+ ++gi+p   GV+F+nLt  Gv ++a+y p+v
   CCD25112.1  66 QsmarvistKtkkeMDKFEVNEL--DFDLRSLLNYLRSRQLEQGIEPGDSGVAFRNLTSIGVDASAAYGPSV 135
                  13444433212221222333333..4*******************************************998 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.022        15      99     123 ..     174     199 ..     144     213 .. 0.83
   2 !   23.1   0.0   8.4e-08   5.6e-05      74     125 ..     848     899 ..     818     906 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.022
                  T.SEEEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLinallpel 123
                  + ++ ++vG  G+G StL++++ +e+
   CCD25112.1 174 SgEMLFVVGRPGAGCSTLLKTISGET 199
                  4488999***************9985 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 8.4e-08
                  HTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  74 algyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                  +l+y++ +    t++ l+++  ++k  k+++l+G+SG+GK+tL+n+l+++ ++
   CCD25112.1 848 HLNYTIPYDG-ATRQLLSDVFGYVKPgKMTALMGESGAGKTTLLNVLAQRINM 899
                  5556555554.4477788888888877********************998665 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.2   7.8e+02      41      83 ..      42      92 ..      23     142 .. 0.76
   2 !   29.0   2.5   8.2e-10   5.5e-07     184     344 ..     577     782 ..     412     783 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.2
  ABC2_membrane_3 41 n...sslsqqlvealeaspsve......lvyevdseeeakkalkngdidgil 83
                     +   ++ls++l ++l++++ +e      +v++ ++++e+  +++ +++d  l
       CCD25112.1 42 QdvnTQLSRHLSNILSNEEGIErlqsmaRVISTKTKKEMD-KFEVNELDFDL 92
                     2356789*************99888887777777777774.56666666555 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 8.2e-10
  ABC2_membrane_3 184 veEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll.afglgipfgnlglllllfllfglayialgyllsslfknsetaqilifiv 276
                      v+ k+  + ++   s    lq ++  +   fl+ l+ +++  ++ +++  ++ g ++  +l++l    ++++++ ++ + +++ +ta +  ++ 
       CCD25112.1 577 VKHKSYSMYHI---S-AESLQAIITEFPVKFLAILILSFVSYWIpVLK--YEAGAFFQYILYLLTVQQCTSFIFKFVATTTTDGVTAHATWGVY 664
                      44444444444...3.55566666666666777777777777778888..88877777777777777788888888888888889999999999 PP

  ABC2_membrane_3 277 illlsgffgglfp.ledlpsalkwifsiiPffapglgllrl.itgdplwe............................................ 324
                       +l++++++g+++ + ++++++kwi +i+P+++ +++l++    g    e                                            
       CCD25112.1 665 GFLILCIYAGFVLpMGQMHHWIKWIHFINPLTYAFESLMSTeFHGR---Emlcsqlipsgpgyenvsianqicnsagavkgqlyvngdayidks 755
                      99999999999777************************99844433...455567777777777888888999999999999999999999999 PP

  ABC2_membrane_3 325 .......illsliilalfavvylllal 344
                              ++s++i ++ +++y++l +
       CCD25112.1 756 yhfgydhAWRSWGINIVWTFFYIVLNV 782
                      999999999999999999999999976 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.033        22      13      45 ..     166     196 ..     160     229 .. 0.79
   2 !   17.4   0.0   6.7e-06    0.0044      11      88 ..     862     938 ..     857    1056 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.033
      AAA_16  13 lsalervrsgrpelvllsGesGvGKsslvrell 45 
                 +++ + v sg  e+++++G +G G s+l++++ 
  CCD25112.1 166 QNCTGVVESG--EMLFVVGRPGAGCSTLLKTIS 196
                 6666666666..89***************9886 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 6.7e-06
      AAA_16  11 qLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy......sa.laqalareellrqllde 88 
                  L ++++ v+ g   ++ l GesG GK++l++ l+++++   + +++g+   +  a p+      s  ++ ++++ +  +   +e
  CCD25112.1 862 LLSDVFGYVKPG--KMTALMGESGAGKTTLLNVLAQRIN---MGVITGDMLVN--AKPLpasfnrSCgYVAQADN-HMAELSVRE 938
                 456666666666..7999*****************9998...55777777777..44431122222223333322.333333333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0043       2.9       3      23 ..     179     199 ..     177     225 .. 0.84
   2 !   10.1   0.1   0.00095      0.63       3      22 ..     877     896 ..     875     910 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0043
                 EEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgek 23 
                  +vGrp +G StL+++++ge+
  CCD25112.1 179 FVVGRPGAGCSTLLKTISGET 199
                 69***************9974 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00095
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 a++G + +GK+tL+n l ++
  CCD25112.1 877 ALMGESGAGKTTLLNVLAQR 896
                 89***************987 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0012      0.78      16      52 ..     175     208 ..     162     210 .. 0.87
   2 !    8.4   0.0    0.0018       1.2      18      54 ..     875     907 ..     868     949 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0012
  Zeta_toxin  16 PklillgGqpGAGKselaellkdelerqgnvvrldpD 52 
                   +++++G pGAG s+l++ +  e   +g++v++++D
  CCD25112.1 175 GEMLFVVGRPGAGCSTLLKTISGE---TGDMVEVQGD 208
                 5689********************...59****9998 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0018
  Zeta_toxin  18 lillgGqpGAGKselaellkdelerqgnvvrldpDdl 54 
                 +  l G +GAGK++l++ l++++    n+ ++ +D l
  CCD25112.1 875 MTALMGESGAGKTTLLNVLAQRI----NMGVITGDML 907
                 667889***************99....4555555554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.081        53       4      25 ..     174     195 ..     172     201 .. 0.88
   2 !   13.2   0.0   0.00012     0.083       5      29 ..     873     897 ..     870     920 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.081
      AAA_22   4 tagilvvtGesGtGKTtllrrl 25 
                 +  +l+v+G +G+G +tll+++
  CCD25112.1 174 SGEMLFVVGRPGAGCSTLLKTI 195
                 56799**************986 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00012
      AAA_22   5 agilvvtGesGtGKTtllrrlleql 29 
                  ++++++GesG+GKTtll+ l+++ 
  CCD25112.1 873 GKMTALMGESGAGKTTLLNVLAQRI 897
                 6899**************9988775 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0059       3.9      83     189 ..      56     345 ..      34     373 .. 0.88
   2 ?    0.7   0.0      0.44   2.9e+02      25      42 ..     874     891 ..     869     898 .. 0.87
   3 !    7.3   0.0    0.0042       2.8     156     208 ..    1001    1053 ..     997    1064 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0059
                 EEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT.............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.............................................. RF
       SMC_N  83 fdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsellesagiske.............................................. 135
                 ++ne+  ++ ++   +is ++ +k+  ++++n+ +   + + + l+s ++++                                               
  CCD25112.1  56 LSNEEGIERLQSMARVIS-TKTKKEMDKFEVNELDFDLRSLLNYLRSRQLEQGiepgdsgvafrnltsigvdasaaygpsveemlrdignlpahllnvf 153
                 455555544444444444.555555569*******************9999999999****************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
       SMC_N 136 ................................................................................................... 135
                                                                                                                    
  CCD25112.1 154 kkkgdvplrkiiqnctgvvesgemlfvvgrpgagcstllktisgetgdmvevqgdfsydgldqqemmskykgyvvycpeldfhfpkitvketidfalkc 252
                 *************************************************************************************************** PP

                 ...........................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT CS
                 ...........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 ...........................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn 189
                                                              SgGe++ v+  L+    ++  a++y  D+    LD++   ++a+ ++++++ 
  CCD25112.1 253 ktprtridnmtrkeyvdslrdlwctvfglrhtyatnvgndfvrGVSGGERKRVS--LV--EAQAMGASIYSWDNATRGLDASTALEFAQAIRTATNM 345
                 ******************************************99******9765..55..34667899***********************988764 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.44
                 SEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlld 42 
                 ++ta++G+ G+GK+ ll+
  CCD25112.1 874 KMTALMGESGAGKTTLLN 891
                 689***********9987 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0042
                  CS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  156 vkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadkl 208 
                  +kp+ l +lDe  + LD +    +++++++  ++ Q i  ++++   +  +++
  CCD25112.1 1001 AKPSLLLFLDEPTSGLDSQSAWSIVQFMRALADSGQSILCTIHQPSATLFEQF 1053
                  5899999**********************************998766555544 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.06        40      22      39 ..     174     192 ..     166     196 .. 0.82
   2 !   12.4   0.1   0.00015     0.098      21      39 ..     872     890 ..     866     895 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.06
      AAA_29  22 kg.atlltGpsGsGKSTll 39 
                 +g + +++G+ G+G STll
  CCD25112.1 174 SGeMLFVVGRPGAGCSTLL 192
                 4558999***********8 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00015
      AAA_29  21 lkgatlltGpsGsGKSTll 39 
                 +  +t l+G+sG+GK+Tll
  CCD25112.1 872 PGKMTALMGESGAGKTTLL 890
                 4459**************9 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.38   2.6e+02       2      34 ..     179     216 ..     178     251 .. 0.77
   2 !   14.5   0.0   6.1e-05      0.04       3      61 ..     878     951 ..     877     978 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.38
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf....gvnlrdvake 34 
                 ++ G pG+G +tl k +s ++  +    g+ + d + +
  CCD25112.1 179 FVVGRPGAGCSTLLKTISGETgDMvevqGDFSYDGLDQ 216
                 689**************988856666665555554444 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 6.1e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe...............aldeskrldedkldkll 61 
                 l+G +G+GKttl + L++r ++gv+ +d++ +  +l   ++                 ++es+r+  + ++ ++
  CCD25112.1 878 LMGESGAGKTTLLNVLAQRINMGVITGDMLVNAKPLPASFNRscgyvaqadnhmaelSVRESLRFAAQLRQPNS 951
                 7899***************999********99999999999866666555555555555555555555555555 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.23   1.5e+02       2      22 ..     177     197 ..     176     211 .. 0.84
   2 !   12.8   0.0   0.00013     0.085       3      33 ..     876     906 ..     874     968 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.23
                 CEEEEC-TTTCHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklal 22 
                 ++++ G++G G +tLl+ +  
  CCD25112.1 177 MLFVVGRPGAGCSTLLKTISG 197
                 5799*************9975 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00013
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqga 33 
                  +l Ge+G GKTtLl  la+ +  g   +++
  CCD25112.1 876 TALMGESGAGKTTLLNVLAQRINMGVITGDM 906
                 6799****************99999888775 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.16   1.1e+02       3      23 ..     178     198 ..     176     228 .. 0.70
   2 !   12.9   0.1   9.1e-05      0.06       2      37 ..     875     907 ..     874     914 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.16
                 EEEEESTTCCHHHHHHHHHCT CS
        cobW   3 tvltGflGsGKTtLlnhllen 23 
                 + ++G +G+G +tLl+++  +
  CCD25112.1 178 LFVVGRPGAGCSTLLKTISGE 198
                 6799***********998743 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 9.1e-05
                 EEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-S CS
        cobW   2 vtvltGflGsGKTtLlnhllenraglklavivNefg 37 
                 +t l G  G+GKTtLln l ++    ++ vi++++ 
  CCD25112.1 875 MTALMGESGAGKTTLLNVLAQR---INMGVITGDML 907
                 578999***********99977...999****9986 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.093        62       1      31 [.     177     208 ..     177     251 .. 0.84
   2 !   10.7   0.0   0.00066      0.44       3      82 ..     877     953 ..     875     978 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.093
      AAA_33   1 lvllvGlpGsGKstlaerllkklg.avllssd 31 
                 ++++vG pG+G stl++ +  ++g +v +  d
  CCD25112.1 177 MLFVVGRPGAGCSTLLKTISGETGdMVEVQGD 208
                 5799**************99999876666655 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00066
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsr 82 
                  l G +G+GK+tl+  l+++  + +++ d l ++     + s +++     ++ ++++el   + s ++++ l+++n ++
  CCD25112.1 877 ALMGESGAGKTTLLNVLAQRINMGVITGDMLVNAKP--LPASFNRSCGYVAQADNHMAELS-VRESLRFAAQLRQPNSTP 953
                 57899***************9999999999877654..34444444455556666664444.566666666666666665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.041        27       2      51 ..     179     227 ..     178     235 .. 0.82
   2 !    8.8   0.0    0.0031       2.1       3      26 ..     878     899 ..     876     964 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.041
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtgqe 51 
                   +++G++g G Stl k+++ +  + ++ +  d  y +  +++++++Y+g  
    CCD25112.1 179 FVVGRPGAGCSTLLKTISGETGDMVEVQG-DFSYDGLDQQEMMSKYKGYV 227
                   799*************9999998884443.5555699999******9865 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0031
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l G+sg GK+tl + La+++   +
    CCD25112.1 878 LMGESGAGKTTLLNVLAQRIN--M 899
                   78****************998..3 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0097       6.4       1      48 [.     875     916 ..     875     969 .. 0.85
   2 !    7.1   0.0    0.0064       4.3     259     299 ..    1005    1045 ..     991    1047 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0097
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipsl 48 
                 +++l G  g+GK++LL  l      ++ ++++ ++ ++ ++ +  p +
  CCD25112.1 875 MTALMGESGAGKTTLLNVL------AQRINMGVITGDMLVNAKPLPAS 916
                 58999**************......66666666666666665555555 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0064
      AAA_21  259 sllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299 
                   ll++DEp +gL+ +   ++++++++l++ g  +++t H+p
  CCD25112.1 1005 LLLFLDEPTSGLDSQSAWSIVQFMRALADSGQSILCTIHQP 1045
                  69**********************99999665566665665 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.028        19      13      38 ..     171     195 ..     165     201 .. 0.85
   2 !    9.3   0.1    0.0013      0.87      18      42 ..     873     897 ..     868     913 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.028
      AAA_30  13 lltsgdrvavltGpAGtGKttalkal 38 
                 +++sg+ + +++G++G+G +t+lk++
  CCD25112.1 171 VVESGE-MLFVVGRPGAGCSTLLKTI 195
                 677886.99**************987 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0013
      AAA_30  18 drvavltGpAGtGKttalkalreaw 42 
                  ++++l G  G+GKtt+l++l++ +
  CCD25112.1 873 GKMTALMGESGAGKTTLLNVLAQRI 897
                 56899***************98765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.34   2.3e+02      18      50 ..     160     192 ..     146     198 .. 0.81
   2 ?   10.7   0.0   0.00042      0.28      28      58 ..     868     898 ..     858     925 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.34
      AAA_25  18 pppprrwlvkgllpagelallaGapgtGKttla 50 
                 p+++  + + g++  ge   ++G+pg+G +tl+
  CCD25112.1 160 PLRKIIQNCTGVVESGEMLFVVGRPGAGCSTLL 192
                 55555566678*****************99997 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00042
      AAA_25  28 gllpagelallaGapgtGKttlaldlalava 58 
                 g++  g+ ++l+G +g+GKttl+  la  + 
  CCD25112.1 868 GYVKPGKMTALMGESGAGKTTLLNVLAQRIN 898
                 677889****************999987665 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.06        40       2      32 ..     178     207 ..     177     221 .. 0.82
   2 ?    5.5   0.1     0.021        14       4      28 ..     878     901 ..     875     913 .. 0.82
   3 ?    0.4   0.0      0.78   5.2e+02     115     145 ..    1025    1054 ..    1018    1061 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.06
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgG 32 
                 +f+ G+pG G +Tl+k ++ +   + v+v+G
  CCD25112.1 178 LFVVGRPGAGCSTLLKTISGET-GDMVEVQG 207
                 6999**************9988.44488877 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.021
                 EE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkssgv 28 
                 + G++G GKtTl++ +++ + + gv
  CCD25112.1 878 LMGESGAGKTTLLNVLAQRI-NMGV 901
                 779***********999999.4555 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.78
                  HHHHHHHHTTTSEEEEE--SS--SHHHHHHH CS
    NTPase_1  115 keaveevLksekpvlavihrrkdlalveeir 145 
                   + ++ + +s++ +l +ih++ +  l e++ 
  CCD25112.1 1025 VQFMRALADSGQSILCTIHQP-SATLFEQFD 1054
                  677888888************.567777765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.76     5e+02       1      20 [.     181     200 ..     181     224 .. 0.84
   2 ?   10.6   0.0   0.00084      0.56       2      32 ..     880     909 ..     879     981 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.76
                 EE-TTSSHHHHHHHHHHHHT CS
      AAA_17   1 lGgPGsGKgtqceklvekyg 20 
                 +G PG+G +t+++++  + g
  CCD25112.1 181 VGRPGAGCSTLLKTISGETG 200
                 699**********9987766 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00084
                 E-TTSSHHHHHHHHHHHHTEEEEEHHHHHHH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsaGdllre 32 
                 G  G+GK+t+++ l+++++  +++ Gd+l +
  CCD25112.1 880 GESGAGKTTLLNVLAQRINMGVIT-GDMLVN 909
                 778*******************98.**9975 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0064       4.3       5      24 ..     177     196 ..     174     230 .. 0.81
   2 ?    3.8   0.0     0.071        47       4      39 ..     874     908 ..     872     929 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0064
  Ploopntkinase3   5 liylvGqPGaGkstlmaelt 24 
                     ++++vG PGaG stl+ +++
      CCD25112.1 177 MLFVVGRPGAGCSTLLKTIS 196
                     99*************98764 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.071
  Ploopntkinase3   4 rliylvGqPGaGkstlmaeltkgfdrskveqeeetv 39 
                     ++  l+G+ GaGk+tl+  l++ ++   ++++  +v
      CCD25112.1 874 KMTALMGESGAGKTTLLNVLAQRINMGVITGDM-LV 908
                     57789***************9998887777554.44 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1         4   2.6e+03      18      44 ..     172     200 ..     161     206 .. 0.73
   2 ?   11.7   0.1    0.0003       0.2      16      45 ..     868     899 ..     855     904 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 4
                 H..TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrglakalg 44 
                 +  g++++  G  GaG +tl + +  + g
  CCD25112.1 172 VesGEMLFVVGRPGAGCSTLLKTISGETG 200
                 2447789999************9976665 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.0003
                 HCH..TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  16 kal..gdvilLeGdLGaGKTtlvrglakalgv 45 
                   +  g++ +L G+ GaGKTtl   la+ +++
  CCD25112.1 868 GYVkpGKMTALMGESGAGKTTLLNVLAQRINM 899
                 333567889******************98865 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.26   1.8e+02       4      43 ..     177     219 ..     174     253 .. 0.86
   2 ?    8.0   0.1    0.0033       2.2       3      22 ..     874     893 ..     873     913 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.26
      AAA_24   4 kiliyGpsgiGKTtlakel...gpkplfidtekGlksldadkf 43 
                 +++++G +g+G +tl+k++   + + + ++ + +++ ld  ++
  CCD25112.1 177 MLFVVGRPGAGCSTLLKTIsgeTGDMVEVQGDFSYDGLDQQEM 219
                 6789***************998889999999988888887665 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0033
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                 ++ +++G+sg+GKTtl++ l
  CCD25112.1 874 KMTALMGESGAGKTTLLNVL 893
                 5789***********99866 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00077      0.51      20      39 ..     874     893 ..     867     895 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00077
      AAA_23  20 gltlItGpNGaGKTTildAi 39 
                 ++t++ G+ GaGKTT+l+ +
  CCD25112.1 874 KMTALMGESGAGKTTLLNVL 893
                 689**************976 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.016        11      18      43 ..     174     198 ..     159     219 .. 0.76
   2 ?    2.4   0.2      0.11        71      22      39 ..     875     892 ..     866     900 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.016
                 SCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  18 lqslvvalvGmgGvGKttlakqilnk 43 
                 ++  ++++vG++G G +tl+k i  +
  CCD25112.1 174 SG-EMLFVVGRPGAGCSTLLKTISGE 198
                 44.589***************99754 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.11
                 EEEEEESTTSSHHHHHHH CS
      NB-ARC  22 vvalvGmgGvGKttlakq 39 
                 + al+G  G GKttl++ 
  CCD25112.1 875 MTALMGESGAGKTTLLNV 892
                 5689**********9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        99  (0.00552178); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 1.05u 0.26s 00:00:01.31 Elapsed: 00:00:00.43
# Mc/sec: 10671.60
//
Query:       CCD25113.1  [L=382]
Description: hypothetical protein NDAI_0E02960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-23   82.2   0.0    9.8e-23   80.6   0.0    1.9  1  Gly_transf_sug  Glycosyltransferase sugar-binding region cont
  ------ inclusion threshold ------
        1.9    8.6   4.7        1.8    8.7   0.7    2.4  2  DUF4752         Domain of unknown function (DUF4752)


Domain annotation for each model (and alignments):
>> Gly_transf_sug  Glycosyltransferase sugar-binding region containing DXD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   1.1e-26   9.8e-23       1      92 [.      72     154 ..      72     160 .. 0.95

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 1.1e-26
  Gly_transf_sug   1 perekkaieslakahpdyqvvvlskelekvrvaildlefllsdtpwfeeakkllplfialsDllRlaiLykyGGiYlDtDvivlkslrnsig 92 
                     p+++k  ++++++ hpdy+++++++e+         l+f+++++ wf+ ++k+++++i+++D++R++iL++yGG+Y+D+D  + ++l ++++
      CCD25113.1  72 PKHWKAGQQRCIDLHPDYEYILWTDEMA--------LDFIKENYHWFLPTFKNYKYPIQRADAIRYFILLHYGGVYIDLDDGCERRL-DPLL 154
                     78999***********************........***************************************************.8876 PP

>> DUF4752  Domain of unknown function (DUF4752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2     0.062   5.6e+02      13      28 ..      13      28 ..       6      37 .. 0.83
   2 ?    8.7   0.7    0.0002       1.8      15      42 ..     199     226 ..     195     233 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.062
     DUF4752 13 llgwlyimfksgrWlv 28
                +l w++i++ ++  l+
  CCD25113.1 13 ILLWVFIVYYTFDLLM 28
                789******9998765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0002
     DUF4752  15 gwlyimfksgrWlvsvllKqwekrkkke 42 
                  ++ im ++g  ++s++ Kq++++ k++
  CCD25113.1 199 PYMTIMSSTGPLFISIVWKQYKRWTKQS 226
                 58899*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2764.07
//
Query:       CCD25114.1  [L=400]
Description: hypothetical protein NDAI_0E02970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-18   66.4   9.4    4.8e-18   65.1   9.4    1.7  1  Lge1           Transcriptional regulatory protein LGE1
  ------ inclusion threshold ------
      0.017   15.1   4.3      0.036   14.1   4.3    1.5  1  PRIMA1         Proline-rich membrane anchor 1


Domain annotation for each model (and alignments):
>> Lge1  Transcriptional regulatory protein LGE1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   9.4   5.3e-22   4.8e-18       1      71 []     324     397 ..     324     397 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 5.3e-22
        Lge1   1 spwiyltdlnd...estlkkiesklkeiesldkqleelklkvlkleleldlleeqierdaLrvqLtqEkLdefl 71 
                 sp++ylt+ln+   +++ ++i+++l+e++ l+++l e +lk++k +l+l+ll +q+erd+L+vqLtqEkLd++l
  CCD25114.1 324 SPFFYLTNLNQfedTNKIEEIKETLNENNILNSKLNENHLKMIKIQLDLNLLINQHERDSLNVQLTQEKLDSLL 397
                 8***********8888889*****************************************************96 PP

>> PRIMA1  Proline-rich membrane anchor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   4.3     4e-06     0.036      26      52 ..     179     207 ..     166     216 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4e-06
      PRIMA1  26 ypplpppppppppp..rllsltaaestvs 52 
                 + p+pppppppppp   l++++ ++s+++
  CCD25114.1 179 QVPYPPPPPPPPPPssSLIASQYTDSSFT 207
                 34455554444444116777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1996  (0.111328); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 2966.64
//
Query:       CCD25115.1  [L=465]
Description: hypothetical protein NDAI_0E02980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-10   38.2  21.5    3.9e-05   23.6   5.5    2.5  2  zf_CCCH_4  Zinc finger domain
    4.1e-09   36.1  12.9    2.6e-05   24.0   2.5    2.3  2  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    3.7e-08   33.0  14.4    0.00023   20.9   4.8    2.4  2  zf-CCCH_4  CCCH-type zinc finger
    0.00075   19.7   2.8    0.00075   19.7   2.8    2.0  2  zf-CCCH_3  Zinc-finger containing family
    0.00078   20.1   0.6    0.00078   20.1   0.6    4.1  5  Torus      Torus domain
  ------ inclusion threshold ------
       0.55   10.8  23.3       0.11   13.1   6.9    2.9  2  zf-CCCH_2  RNA-binding, Nab2-type zinc finger


Domain annotation for each model (and alignments):
>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   5.5   1.3e-08   3.9e-05       1      19 []     123     141 ..     123     141 .. 1.00
   2 !   20.3   8.0   1.4e-07   0.00042       1      19 []     153     171 ..     153     171 .. 0.99

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.3e-08
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 Ckff++G+C+ G++C+F+H
  CCD25115.1 123 CKFFKNGNCQAGNACPFSH 141
                 ******************* PP

  == domain 2  score: 20.3 bits;  conditional E-value: 1.4e-07
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 Ck+f+ G+Ck+G+kC  +H
  CCD25115.1 153 CKYFKMGNCKFGNKCANSH 171
                 *****************99 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   2.5   8.7e-09   2.6e-05       1      26 [.     118     142 ..     118     143 .. 0.87
   2 !   17.4   2.9     1e-06     0.003       3      21 ..     150     167 ..     149     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 8.7e-09
                 -HCHCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   1 yktelCrffmrtGyCkyGdrCkFaHg 26 
                 y +++C+ f+++G C+ G++C+F+H+
  CCD25115.1 118 YSHVPCK-FFKNGNCQAGNACPFSHS 142
                 6789***.6666*************8 PP

  == domain 2  score: 17.4 bits;  conditional E-value: 1e-06
                 CHCBCHHHHHS--TTGGG- CS
     zf-CCCH   3 telCrffmrtGyCkyGdrC 21 
                 + +C++f ++G Ck+G++C
  CCD25115.1 150 RTPCKYF-KMGNCKFGNKC 167
                 689**55.55********* PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   2.0   9.4e-07    0.0028       1      21 [.     121     141 ..     121     142 .. 0.97
   2 !   20.9   4.8   7.7e-08   0.00023       2      21 ..     152     171 ..     151     171 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 9.4e-07
   zf-CCCH_4   1 rlCpyfakGsCrfGdnCrFsH 21 
                 ++C++f +G+C  G+ C FsH
  CCD25115.1 121 VPCKFFKNGNCQAGNACPFSH 141
                 69******************* PP

  == domain 2  score: 20.9 bits;  conditional E-value: 7.7e-08
   zf-CCCH_4   2 lCpyfakGsCrfGdnCrFsH 21 
                 +C+yf  G+C+fG++C  sH
  CCD25115.1 152 PCKYFKMGNCKFGNKCANSH 171
                 9***************6555 PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.9   5.7e+03      61      93 ..      12      44 ..       7      59 .. 0.62
   2 !   19.7   2.8   2.5e-07   0.00075       8      55 ..     123     172 ..     116     188 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.9
   zf-CCCH_3 61 rkeipcywenqpaGcqklhcaflhekpravdgl 93
                +++i   w++q + +q ++ ++  ++p + +++
  CCD25115.1 12 NSSILKNWKEQQQQQQEQDQSLPLSSPLHSTNN 44
                566777777777777777776666666555444 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 2.5e-07
   zf-CCCH_3   8 cyffyystctkGdscpfrheeaalG.setvctlWqegrc.lrevckfrhm 55 
                 c ff   +c+ G+ cpf h+   l  + t c++++ g+c + ++c   h+
  CCD25115.1 123 CKFFKNGNCQAGNACPFSHSLDYLTaNRTPCKYFKMGNCkFGNKCANSHI 172
                 99******************9988626799*********66899998887 PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       5.1   1.5e+04      37      42 ..      22      27 ..       8      47 .. 0.60
   2 !   20.1   0.6   2.6e-07   0.00078      48      93 ..      98     143 ..      78     149 .. 0.76
   3 !   12.5   0.5   6.1e-05      0.18      69      98 ..     149     179 ..     145     190 .. 0.76
   4 ?    0.3   0.5      0.37   1.1e+03      24      46 ..     245     268 ..     223     289 .. 0.58
   5 ?   -3.2   0.6       4.6   1.4e+04      30      52 ..     433     455 ..     410     462 .. 0.51

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.1
                S-THHH CS
       Torus 37 eekekk 42
                ++++++
  CCD25115.1 22 QQQQQQ 27
                221111 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 2.6e-07
                 --S----HHHH----HHHHSTT--B-HHHHHT--SSGGG-SSB-S- CS
       Torus  48 kaktrcnikkdsGytkadkekesyfClfFarGlCakGkkCeylHrl 93 
                   k++++i+k++   +++k+ +++ C fF  G C+ G+ C + H+l
  CCD25115.1  98 LIKQHLRITKENKASNNSKNYSHVPCKFFKNGNCQAGNACPFSHSL 143
                 445556666666667777778889********************98 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 6.1e-05
                 T--B-HHHHHT--SSGGG-SSB-S-.--SS- CS
       Torus  69 esyfClfFarGlCakGkkCeylHrl.Pteed 98 
                 +++ C +F  G C+ G+kC+  H + P++ +
  CCD25115.1 149 NRTPCKYFKMGNCKFGNKCANSHIInPSQYN 179
                 5677*******************99444433 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.37
                 -.----TTSS----S-THHHHS-- CS
       Torus  24 g.eeyNiWynkwsgeekekkkksk 46 
                 g ++yN  yn  s++ ++ +++++
  CCD25115.1 245 GnQNYNYNYNYNSTSLQNYSQQQQ 268
                 336666666655533222222222 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 4.6
                 TSS----S-THHHHS-----S-- CS
       Torus  30 Wynkwsgeekekkkkskekaktr 52 
                   +   ++++e+++++ ++ + r
  CCD25115.1 433 LLSMTEEDDEEQQRQNATVDNNR 455
                 44444444444444444444444 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   6.9   3.6e-05      0.11       1      17 [.     122     141 ..     122     141 .. 0.99
   2 ?    2.7   8.4     0.067     2e+02       1      17 [.     152     171 ..     152     171 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
   zf-CCCH_2   1 pCrffpn..C.tnpkCpFaH 17 
                 pC+ff n  C  +  CpF+H
  CCD25115.1 122 PCKFFKNgnCqAGNACPFSH 141
                 9******************* PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.067
   zf-CCCH_2   1 pCrffpn..C.tnpkCpFaH 17 
                 pC++f    C ++ kC  +H
  CCD25115.1 152 PCKYFKMgnCkFGNKCANSH 171
                 89999977799999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1844  (0.10285); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3366.96
//
Query:       CCD25116.1  [L=519]
Description: hypothetical protein NDAI_0E02990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   5.7e-100  334.7  16.2   8.5e-100  334.1  16.2    1.2  1  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
  ------ inclusion threshold ------
       0.11   12.3   0.0       0.24   11.2   0.0    1.6  1  CCDC92           Coiled-coil domain of unknown function


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.1  16.2  9.5e-104  8.5e-100       2     324 ..     152     467 ..     147     468 .. 0.95

  Alignments for each domain:
  == domain 1  score: 334.1 bits;  conditional E-value: 9.5e-104
  Glyco_transf_15   2 qeeaeekknknkeklkkllkekanvknkakekstlefkpkslvnrgrkPiedenenAtllalvrnselakilrsikkvekrFnkkfnYpyvfin 95 
                      +e+++ k ++ +ek +k++k+++  +++ + ++ ++ +++s++n g +P      +A+l+a +++++   i++si+++e+ Fn++fnYp+vf+ 
       CCD25116.1 152 NEQENLKMKTREEKRAKFIKSQT--ERYGGPDTLMSAMVPSWANVGDRP------KACLFAYIEDDDHDGIMKSINEMEDMFNRQFNYPWVFLT 237
                      44555556666677777775554..599999999999999999999999......*************************************** PP

  Glyco_transf_15  96 depftekfkekieklveeadvefgeipkeews.yPefideekaakareeladiaygdsesyrhmcRyysGlfykhellkkydyYwRvePdikly 188
                         ++e+fk++i+++++  d + g+i ++ w+ yP+fid  ka++a++++a ++ gds  +r  +Ry++Glf+kh l+k++d+YwRveP+++l 
       CCD25116.1 238 RYGISEEFKQDINDTLR-VDFQIGQIDEKDWNgYPSFIDDIKAEEAKIKMAGLEFGDSLEFRLKNRYFAGLFWKHALFKDFDWYWRVEPNMELR 330
                      *****************.9************77************************************************************* PP

  Glyco_transf_15 189 cdieyDvfkymkdekkiygFtlslkeieetiktlWdstkkflkenkefieeknslsflsdddqdtynlCeFwsnfeigdldffrseayekfFey 282
                      c+i+yDvf++++d++k +gF +s ke ++t + lWd++kkf +enk++i++kn+++f+sddd++++n+C+Fwsnfe+++l+ffrs a++kfFe+
       CCD25116.1 331 CEIDYDVFRWLQDKQKSFGFSISKKENKDTLPGLWDEVKKFKDENKKLIHDKNFMRFVSDDDGNSFNQCSFWSNFEVANLNFFRSSAFNKFFES 424
                      ********************************************************************************************** PP

  Glyco_transf_15 283 lDskGgffYerWgdapvhsiavslllpkdk.ihffedigyshd 324
                      lD++GgffYerW+  p+h+iavsll+++d+ + ff d g++ +
       CCD25116.1 425 LDNNGGFFYERWATDPLHTIAVSLLVSRDTfVIFFLDFGFYSE 467
                      ***************************998468999***9976 PP

>> CCDC92  Coiled-coil domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.7e-05      0.24      15      46 ..     354     385 ..     341     395 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.7e-05
      CCDC92  15 qqqhaatLkgLHkEIekLqkenkdLtfklime 46 
                 +++ ++tL gL +E++k + enk L ++ ++ 
  CCD25116.1 354 KKENKDTLPGLWDEVKKFKDENKKLIHDKNFM 385
                 7999*********************9986665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 3783.90
//
Query:       CCD25117.1  [L=295]
Description: hypothetical protein NDAI_0E03000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-05   24.7   0.0    3.2e-05   23.9   0.0    1.4  1  ODC_AZ    Ornithine decarboxylase antizyme


Domain annotation for each model (and alignments):
>> ODC_AZ  Ornithine decarboxylase antizyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.8e-09   3.2e-05      39      96 ..     203     262 ..     164     281 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.8e-09
      ODC_AZ  39 sedlkegLvaLlelAeeklecehlvicldrse...eeelkdllraLqwvGfelvtldawav 96 
                 + + k+ L++Llel ++ l+ + l ++l+r++   ++  + llr+L+w+G++++  ++ + 
  CCD25117.1 203 TINTKDWLLSLLELTSS-LDLQYLRLFLRRNTngnTNLITTLLRNLNWIGGKIIPNENRNN 262
                 3478999********99.**************887677789***********998887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2144.99
//
Query:       CCD25118.1  [L=224]
Description: hypothetical protein NDAI_0E03010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-46  157.6   0.2    2.6e-46  157.2   0.2    1.1  1  Arf          ADP-ribosylation factor family
    4.2e-15   55.7   0.0    5.6e-15   55.3   0.0    1.2  1  Ras          Ras family
    4.2e-13   49.6   0.0      7e-13   48.8   0.0    1.4  1  Roc          Ras of Complex, Roc, domain of DAPkinase
      2e-12   47.0   1.7    1.1e-09   37.9   0.7    2.4  2  G-alpha      G-protein alpha subunit
    2.5e-12   46.6   0.9      1e-11   44.6   0.4    1.9  2  SRPRB        Signal recognition particle receptor beta subuni
    1.1e-07   31.5   0.1    1.2e-06   28.2   0.1    2.0  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    1.2e-07   31.4   0.4    1.3e-07   31.2   0.4    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    1.3e-06   28.4   0.0    2.3e-06   27.7   0.0    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0025   18.1   0.0      0.011   15.9   0.0    1.9  2  AAA_22       AAA domain
  ------ inclusion threshold ------
      0.026   14.0   0.0      0.066   12.6   0.0    1.6  2  TniB         Bacterial TniB protein
      0.032   13.2   0.1      0.061   12.3   0.2    1.4  2  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
       0.13   12.9   0.0        0.3   11.8   0.0    1.6  1  CoA_binding  CoA binding domain


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.2   0.2   1.8e-49   2.6e-46       9     172 ..      12     184 ..       4     187 .. 0.88

  Alignments for each domain:
  == domain 1  score: 157.2 bits;  conditional E-value: 1.8e-49
                 TT.TTEEEEEEEESTTSSHHHHH......HHHHHSSCEECSSSSSEEEEEEEETTEE..EEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHH CS
         Arf   9 klkkkelrilllGLDnaGKtTil......kklkleelvttvPTigfnveeleiknlk..ftvwDvGGqeklRplWknYfektdavifvvDsadreRlee 99 
                 +++k ++ il+lGLDnaGKtT l      +++++++l++++PT+g nv ++ + n k  +++wDvGGqe+lR +W++Y+++ +++ifvvDs+++ Rl+e
  CCD25118.1  12 WTRKEQYSILILGLDNAGKTTFLetckkeYNMTSKDLNKITPTVGQNVATIPVDNNKrlLKFWDVGGQETLRAMWSEYYSQCHGIIFVVDSCNSLRLDE 110
                 45678999***************3333333455567777***********9997765559*************************************** PP

                 HHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGG..SSSSSSEEEEEEBTTTTBTHHHHHHHHH CS
         Arf 100 akeeLkalleeeelkevallvlaNKqDlpealseeelrellglee..lkgkrkleiqkcsavkgeglkeglewls 172
                 ++e L++++ +e++++v++l+laNKqD pe ++ ++++e+ +     l+ +r+  +  +sa++geg+k++++w++
  CCD25118.1 111 CSETLRSIVMDEDIESVPILMLANKQDKPERMEVQDIKEIFNKIAehLS-ARDSRVLPVSALTGEGVKDAIDWMV 184
                 ***************************************9875443366.***********************97 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   0.0   3.7e-18   5.6e-15       2     159 ..      20     186 ..      19     189 .. 0.80

  Alignments for each domain:
  == domain 1  score: 55.3 bits;  conditional E-value: 3.7e-18
                 EEEEESTTSSHHHHHHHHHHSSCS.....SSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvkdkFk.....eeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwve 95 
                 ++++G  + GKt++l    k++       ++ ++T+   + +++i vd+++  l+ wD  Gqe  +++ + yy++++gi+ v d  ++  ++++++ ++
  CCD25118.1  20 ILILGLDNAGKTTFLETCKKEYNMtskdlNKITPTV--GQNVATIPVDNNKRLLKFWDVGGQETLRAMWSEYYSQCHGIIFVVDSCNSLRLDECSETLR 116
                 6899**********9875444332111113455666..678899***************************************************9999 PP

                 HHHHHST.TTSEEEEEEETTTGGGG-SS-..HHHHHHHHHHHT...SEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras  96 eikrvae.envpivLvGnKvDleekravs..teegeelakelg...lkfletSAktnenveeafeellre 159
                  i +  + e+vpi++++nK D  e+ +v+  +e  +++a++l+    + l +SA t e+v++a++ ++ +
  CCD25118.1 117 SIVMDEDiESVPILMLANKQDKPERMEVQdiKEIFNKIAEHLSardSRVLPVSALTGEGVKDAIDWMVIR 186
                 9999988899***********999666652223345555544422267899***********99987755 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   4.7e-16     7e-13       2     120 .]      20     138 ..      19     138 .. 0.67

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 4.7e-16
                 EEEESSTTSSHHHHHHCHCT-CCC......-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHH.. CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfs......ekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrss.. 92 
                 ++++G  ++GKt++l+   + +++      +k ++t+g +++t        v+n+    k  l++WD++Gqe  r++ + y+++ + +i+v+ds +s  
  CCD25118.1  20 ILILGLDNAGKTTFLETCKK-EYNmtskdlNKITPTVGQNVATIP------VDNN----KRLLKFWDVGGQETLRAMWSEYYSQCHGIIFVVDSCNSlr 107
                 799************98765.343011111233444444444322......3333....3479******************************776622 PP

                 .HCHHHHHHHHHHH..CSSS-EEEEEE-TTT CS
         Roc  93 .enlkeWlkelkkv..agkspvilvgnkiDl 120
                  ++ +e l+++      ++ p+++++nk D+
  CCD25118.1 108 lDECSETLRSIVMDedIESVPILMLANKQDK 138
                 245555666654441144569999****995 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00038      0.56      20      44 ..      14      38 ..       5      39 .. 0.82
   2 !   37.9   0.7   7.7e-13   1.1e-09     169     299 ..      36     155 ..      34     218 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00038
                E..EEEEEEEESTTSSHHHHHHHHH CS
     G-alpha 20 kkrevkllllGqseSGKsTilkqlk 44
                +k+++++l+lG +  GK+T+l+  k
  CCD25118.1 14 RKEQYSILILGLDNAGKTTFLETCK 38
                24689***************98765 PP

  == domain 2  score: 37.9 bits;  conditional E-value: 7.7e-13
                 HCSTT----CHHHHCS-----SEEEEEEEC.T-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GG CS
     G-alpha 169 itspdYlptddDilkarlktvGisetkfev.dsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkl 266
                  ++++Y  t++D+ k  ++tvG +  ++ v ++k++++++dvgGq + r+ W +++++   iiF+v           + +  rl+e  +  ++i++ + 
  CCD25118.1  36 TCKKEYNMTSKDLNKI-TPTVGQNVATIPVdNNKRLLKFWDVGGQETLRAMWSEYYSQCHGIIFVVD----------SCNSLRLDECSETLRSIVMDED 123
                 57899********999.59***99999999766999*****************************97..........56789***************** PP

                 GTTSEEEEEEE-HHHHHHHCCCS-GGGCCTT-- CS
     G-alpha 267 lkntpiiLflnKlDileeKlkkgklskyfpsye 299
                  +++pi+++ nK D   e+++ ++++++f ++ 
  CCD25118.1 124 IESVPILMLANKQDK-PERMEVQDIKEIFNKIA 155
                 **************7.44566666666666655 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.4     7e-15     1e-11       2     149 ..      16     163 ..      15     205 .. 0.79
   2 ?    1.2   0.2      0.14   2.1e+02      50      91 ..     181     222 ..     151     224 .] 0.75

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 7e-15
                 ---EEEEE-STTSSHHHHHHHHHHS.......S---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHH CS
       SRPRB   2 skpavllvGlsdsGKTslftrLttd.......svkktvtSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevk 93 
                 ++ ++l++Gl ++GKT++++   ++         k t t  ++ a+  v ++++  l++ D+ G+e lr   +e+    s+ +g++fvvDS  ++ ++ 
  CCD25118.1  16 EQYSILILGLDNAGKTTFLETCKKEynmtskdLNKITPTVGQNVATIPV-DNNKRLLKFWDVGGQETLRAMWSEY---YSQCHGIIFVVDSC-NSLRLD 109
                 5678**************9987776654333222223333344455555.67778899************99998...789*********96.7889** PP

                 HHHHHHHHHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHHHHHHHHHHHCHH CS
       SRPRB  94 evAEllyeilliteklkdavdiliACnKqelflakspklikdaLEkElnkiierrs 149
                 e  E l +i+++     ++v+il+  nKq+     + + ik+   k  +++  r s
  CCD25118.1 110 ECSETLRSIVMDED--IESVPILMLANKQDKPERMEVQDIKEIFNKIAEHLSARDS 163
                 **********9988..689***********98888888888877776666665555 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.14
                 T-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHH CS
       SRPRB  50 kltliDfPGheklrqklleklkaksslkglvfvvDStidpke 91 
                  + +i +  ++k+  ++++  k+ +++  ++ ++  +i ++ 
  CCD25118.1 181 DWMVIRVQRNKKIDLQFIDDTKDDHKMCYIINIIKDSITDRS 222
                 455666666788888888888888888888888877777765 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   7.9e-10   1.2e-06      49     189 ..      50     184 ..      15     189 .. 0.66

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 7.9e-10
                 HHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHH CS
    GTP_EFTU  49 ErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrlkaelkei 142
                      +  ++a+i ++   +k+l+++ D  G +      ++ +++++g ++vvd+ +        +  + ++     e vpi ++ NK D+++    + 
  CCD25118.1  50 KITPTVGQNVATIPVD--NNKRLLKFWDVGGQETLRAMWSEYYSQCHGIIFVVDSCNSlrldeCSETLRSIVMDEDIESVPILMLANKQDKPERMEVQD 146
                 3444555667777777..9***********************************99765533244444555555556667799999******5433333 PP

                 HHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHH CS
    GTP_EFTU 143 veevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealv 189
                 ++e+ +k+       e+  ++   +  v+++Sal+gegvk+ ++ +v
  CCD25118.1 147 IKEIFNKI------AEHLSAR---DSRVLPVSALTGEGVKDAIDWMV 184
                 33344355......3333333...469*************9887766 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.4   8.9e-11   1.3e-07       2     136 ..      20     150 ..      19     222 .. 0.81

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 8.9e-11
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFd..nylardtlrlgatidveksevrflgnl.tlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesr.eleedle 96 
                 +L++G  ++GKt+  +   +  n++ +d  +++ t+  +  ++ + +n   l+ wD+gGqe++ +       +e ++++  +i+V+D+ ++  l+e  e
  CCD25118.1  20 ILILGLDNAGKTTFLETCKKeyNMTSKDLNKITPTVGQNVATIPVDNNKrLLKFWDVGGQETLRAMW-----SEYYSQCHGIIFVVDSCNSlRLDECSE 113
                 89************9999863367899***********99999987776478********9887764.....7899***********986635777777 PP

   Gtr1_RagA  97 tlkeilealrqyspeakvfvlihKmDliqedereeifeer 136
                 tl++i+    +  + + + +l +K D+ +++e ++i e +
  CCD25118.1 114 TLRSIVM--DEDIESVPILMLANKQDKPERMEVQDIKE-I 150
                 7777764..45556777888889999987655544432.2 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   1.5e-09   2.3e-06       2     114 .]      20     135 ..      19     165 .. 0.67

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 1.5e-09
                 EEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSE..EEEEEE..ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETT....TTCS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge.kaivsdkpgtTrdi..negrvk..lkgkeielvDtpGliegaseekglgkaflalee.adlillvvdas....eekl 90 
                 ++i+G  N+GK+t++ +  +e +   +d +  T ++  n +++    +++ ++++D+ G  e       l+  + +  + ++ i++vvd+         
  CCD25118.1  20 ILILGLDNAGKTTFLETCKKEyNMTSKDLNKITPTVgqNVATIPvdNNKRLLKFWDVGG-QE------TLRAMWSEYYSqCHGIIFVVDSCnslrL--- 108
                 89****************998644444444444443214444332255688********.44......4555555544339********5444331... PP

                 HHHHHHHHHHHHH...TTSEEEEEEES CS
    MMR_HSR1  91 kpldeeleellee...akkplilvlnk 114
                 ++  e+l ++  +   +  p+++++nk
  CCD25118.1 109 DECSETLRSIVMDediESVPILMLANK 135
                 333333333322234445566666665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.7e-06     0.011       3     118 ..      15     121 ..      13     135 .. 0.77
   2 ?   -1.0   0.0       1.3     2e+03      71      95 ..     143     166 ..     123     171 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 7.7e-06
      AAA_22   3 ktagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl....lrellralglelkaerlsseellealeqalraraviellii 97 
                 k+++++++ G   +GKTt l++ +++++        ++++ ++t++++ + +++     ++ll+++++   +    +e l+++  ++ ++++   ++++
  CCD25118.1  15 KEQYSILILGLDNAGKTTFLETCKKEYNMT------SKDLNKITPTVGQNVATIpvdnNKRLLKFWDV---G---GQETLRAMWSEYYSQCHG-IIFVV 100
                 5899***********************644......66777888888886666641114555555554...4...778999999999999999.9**** PP

      AAA_22  98 DEaqhlrs.eealeeLrsllnl 118
                 D    l + +e+ e+Lrs++ +
  CCD25118.1 101 DSCNSL-RlDECSETLRSIVMD 121
                 ******.779999999999874 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
      AAA_22  71 erlsseellealeqalraraviell 95 
                 e ++ +e++++++++l+ar+  ++l
  CCD25118.1 143 EVQDIKEIFNKIAEHLSARDS-RVL 166
                 567778888888888888877.554 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.4e-05     0.066      25      73 ..       7      55 ..       2      73 .. 0.79
   2 ?   -2.3   0.0       1.6   2.4e+03      81      93 ..     145     157 ..     115     173 .. 0.57

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.4e-05
        TniB 25 eLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekdedaekvpvl 73
                 L+++ +rk+  ++l++G  n GKt+ +e ++++++ +++  +++ p +
  CCD25118.1  7 GLYNNWTRKEQYSILILGLDNAGKTTFLETCKKEYNMTSKDLNKITPTV 55
                577888889999**********************999887666666655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
        TniB  81 pdekrlyaaiLea 93 
                  d k+++++i e+
  CCD25118.1 145 QDIKEIFNKIAEH 157
                 2333334444333 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2     3e+03      34      52 ..      22      40 ..      18      49 .. 0.77
   2 ?   12.3   0.2   4.1e-05     0.061     163     261 ..     122     221 ..      92     224 .] 0.66

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
                EEE-TTSSHHHHHHHHHHH CS
        MeaB 34 ltGvPGaGkstlvealgle 52
                + G+  aGk t++e    e
  CCD25118.1 22 ILGLDNAGKTTFLETCKKE 40
                5678889999999987665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 4.1e-05
                 CCCHHH-SEEEEE---HHHHHHHHHHHHHHHHHCSTTBTTB--EEEEEBCCCTBSHHHHHHHHH..HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH CS
        MeaB 163 kGileiaDiivvnkaDkkeaekaarelraaleleeekekeWrpkvlktsavegeGidelvdaie..ehrevlkktGllekrrrerakeelrelvedell 259
                 + i  +  ++  nk+Dk+e  +++  ++ + ++  e+ +   ++vl +sa++geG+++ +d +     r+   +   ++  + ++++ ++ ++++d+++
  CCD25118.1 122 EDIESVPILMLANKQDKPERMEVQD-IKEIFNKIAEHLSARDSRVLPVSALTGEGVKDAIDWMVirVQRNKKIDLQFIDDTKDDHKMCYIINIIKDSIT 219
                 455556667889****999887765.6666777777788889**************9987754300333333333456777777777788888888877 PP

                 HH CS
        MeaB 260 kr 261
                 +r
  CCD25118.1 220 DR 221
                 76 PP

>> CoA_binding  CoA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0002       0.3       2      55 ..      16      68 ..      15      77 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
                 TTEEEEEETTTSHHHHHH.HHHHHHHHECEEEEEEC-TTTTTCEETTEEEESCHH CS
  CoA_binding  2 kdtkviviGagglgiagl.yhfkeklkygikavfgvnprkvgtevlglpvyksvd 55
                 +++++++ G  + g+     + k+++++  k +  ++p+ vg++v ++pv  + +
   CCD25118.1 16 EQYSILILGLDNAGKTTFlETCKKEYNMTSKDLNKITPT-VGQNVATIPVD-NNK 68
                 6789**********99998999*****************.**********8.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       793  (0.04423); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1555.67
//
Query:       CCD25119.1  [L=396]
Description: hypothetical protein NDAI_0E03020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.2e-106  355.1   0.3   2.8e-106  354.8   0.3    1.1  1  Anp1             Anp1
     0.0043   16.7   0.2     0.0098   15.5   0.2    1.6  1  Glyco_transf_8   Glycosyl transferase family 8
     0.0059   16.4   0.0      0.011   15.6   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
     0.0066   16.9   0.4      0.022   15.2   0.4    1.9  1  DUF4286          Domain of unknown function (DUF4286)


Domain annotation for each model (and alignments):
>> Anp1  Anp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.8   0.3  6.2e-110  2.8e-106       2     264 .]      97     359 ..      96     359 .. 0.98

  Alignments for each domain:
  == domain 1  score: 354.8 bits;  conditional E-value: 6.2e-110
        Anp1   2 vekydlnklestadaaenkekvLiltplrdaekflpeyfenllkltyphelidLaflvsdtsegdktlealeeelkklqkkkkkkrfrsitilekdfge 100
                 ++++dlnkl+st+da+ nkekvLiltpl   +kf++ey+en+l+l+yp+eli+L+f+v++t++gd +l++le++++k+q++kk++rf+++til++d+++
  CCD25119.1  97 IAEFDLNKLHSTKDASINKEKVLILTPL---QKFHQEYWENILQLSYPRELIELGFIVPRTQTGDLALQSLEKAVEKTQTDKKNQRFAKVTILRQDSES 192
                 7899************************...************************************************98888*************** PP

        Anp1 101 kisqsesdrhkvevqklRRklmaraRNsLlssaLkpehswvlwlDaDivetpktliedlishdkdvivpnvlrklpdelek...eqpYDlnsWveseea 196
                  ++  e++rh+++vqk+RR++ma aRN Ll+s+++p++swvlwlDaDivetp+tli+d+++hdk v+++nv+++++d ++k   ++pYD+n+W+ese +
  CCD25119.1 193 FNKLAEKERHALNVQKERRSSMALARNELLFSTIGPHTSWVLWLDADIVETPSTLIQDMTAHDKSVLAANVFQRYYDDEKKasaTRPYDFNNWQESEIG 291
                 ****************************************************************************98775689*************** PP

        Anp1 197 lelakkldeddvivegyaelatkrvhlaklrdengdpeeeveLDgVGgvsilvkaevfrqGamFpaft 264
                 lela+k+++d++ivegy+e+at+r+++a+++d ++  +ee+ LDgVGg ++lvkaev+r+GamFp+f+
  CCD25119.1 292 LELASKMNDDEIIVEGYSEIATYRPLMAYFHDTTKPVSEEMILDGVGGGCTLVKAEVHRDGAMFPSFP 359
                 ******************************************************************96 PP

>> Glyco_transf_8  Glycosyl transferase family 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   2.2e-06    0.0098      46     115 ..     169     242 ..     159     288 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.2e-06
  Glyco_transf_8  46 nleklnklassykevlellesdkksledf...esklklrspkylsllnylRl.ylpelf.pkldkilylDaDvvv 115
                     ++ + +k ++++++v ++l +d++s++++   e+    ++++  s++ ++R   l++ + p  + +l+lDaD+v 
      CCD25119.1 169 EKTQTDKKNQRFAKV-TILRQDSESFNKLaekERHALNVQKERRSSMALARNeLLFSTIgPHTSWVLWLDADIVE 242
                     456667777777777.788888888877788788889999***********934678889*************85 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.4e-06     0.011      52     133 ..     199     286 ..     181     316 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.4e-06
                      C-TTEEEEEESSS-HHHHHHHHHHHH--SS...EEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS...E CS
  Glycos_transf_2  52 edprvrvirreenvGkagalnaglraatgd...yilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv...g 133
                      ++ +   +++e++   a a+n+ l  + g    ++l+lDaD + +p +l + + a +k   ++ + qr++ + ++   +r++ +   +
       CCD25119.1 199 KERHALNVQKERRSSMALARNELLFSTIGPhtsWVLWLDADIVETPSTLIQDMTAHDKSVLAANVFQRYYDDEKKASATRPYDFnnwQ 286
                      5556666788889999******************************755444444444455555555555555555555555444332 PP

>> DUF4286  Domain of unknown function (DUF4286)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.4   4.9e-06     0.022       6      47 ..      69     110 ..      65     137 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 4.9e-06
     DUF4286   6 vnvdeeveeewleWlkeehipevlatglfskarllrvleeee 47 
                 + + +  ++++++W+ +ehi e++++g++ +  l+++ ++++
  CCD25119.1  69 FRIPKYSYKKVQNWMFNEHIDEIISEGHIAEFDLNKLHSTKD 110
                 6677888999**************************995443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       976  (0.0544369); expected 358.6 (0.02)
Passed bias filter:                      550  (0.0306766); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2986.63
//
Query:       CCD25120.1  [L=418]
Description: hypothetical protein NDAI_0E03030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-47  158.6   0.1    7.8e-47  157.8   0.1    1.4  1  EF1G      Elongation factor 1 gamma, conserved domain
    1.1e-14   54.5   0.0    3.3e-14   53.0   0.0    1.9  1  GST_N     Glutathione S-transferase, N-terminal domain
    1.7e-13   50.6   0.4    3.6e-13   49.5   0.0    1.7  2  GST_C     Glutathione S-transferase, C-terminal domain
    0.00014   21.8   0.0    0.00029   20.8   0.0    1.5  1  GST_C_2   Glutathione S-transferase, C-terminal domain
    0.00033   21.0   0.0     0.0008   19.8   0.0    1.6  1  GST_N_3   Glutathione S-transferase, N-terminal domain
     0.0012   19.0   0.0     0.0032   17.6   0.0    1.7  1  GST_C_3   Glutathione S-transferase, C-terminal domain


Domain annotation for each model (and alignments):
>> EF1G  Elongation factor 1 gamma, conserved domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.8   0.1   2.6e-50   7.8e-47       1     107 []     256     362 ..     256     362 .. 0.99

  Alignments for each domain:
  == domain 1  score: 157.8 bits;  conditional E-value: 2.6e-50
        EF1G   1 kakdplaalpkskfvldewKrkYsnedteekalkyfwenfdkeeyslwkveYkyneeltktfmssnliggffqrleklrkyaFgsvvvfgennnseisG 99 
                 k+k+pl+ l ks+f ldewKr+Ysnedt+++al++fwe++++eeyslwkv+Ykyn+elt tfms+nl+ggff+rl +++ky+Fg++vv+gennn+ i+G
  CCD25120.1 256 KPKHPLELLGKSTFILDEWKRQYSNEDTRPVALPWFWEHYNPEEYSLWKVDYKYNDELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGITG 354
                 79************************************************************************************************* PP

        EF1G 100 vwlfrGqe 107
                 + ++rGq+
  CCD25120.1 355 AIMVRGQD 362
                 ******97 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.1e-17   3.3e-14       2      74 ..       3      70 ..       2      72 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 1.1e-17
                EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET.TEEEESHHHHHHHH CS
       GST_N  2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn.gkkltESraIleYi 74
                ++tly +++ +r+ ++r+l++  +++++ v+++      +++++++++pl+kvPa++++ g+kltES+aI++Y+
  CCD25120.1  3 QGTLYANFR-IRTVVPRALVKTFNLDVKLVEPEK-----AQEQFARDFPLKKVPAFVGPkGFKLTESMAINFYL 70
                79*******.**********************93.....3479******************************8 PP

>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   1.2e-16   3.6e-13      18      93 .]     123     199 ..      96     199 .. 0.87
   2 ?   -3.4   0.3       3.9   1.2e+04      23      30 ..     224     231 ..     213     249 .. 0.56

  Alignments for each domain:
  == domain 1  score: 49.5 bits;  conditional E-value: 1.2e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTSSCHHHHHHHHHHHHHHHHTTTTT.TTTSHHHHHHHHHHHTSH CS
       GST_C  18 ekkeelvdealekvaevlsaleeelkkqdylvGdkltlADialvpilnwlqrlglafg.qekfpnlkawlerimarp 93 
                   +++ vd+al k+ e++ ++e++l++++yl+++ ++lAD++ ++i+++ + + ++   ++++p + +w+++i+a+p
  CCD25120.1 123 PYNKKKVDAALVKIEEMVTIFEARLRNYTYLATESISLADLVCAAIFTRGFNYLFGKQwRDEHPIIMRWFNTIIASP 199
                 345568******************************************999999999999***************98 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.9
                 HHHHHHHH CS
       GST_C  23 lvdealek 30 
                 ++++a++k
  CCD25120.1 224 EKKAAEPK 231
                 33333333 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   9.6e-08   0.00029       4      67 ..     129     192 ..     126     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 9.6e-08
                 HCHHHHHCCHCHHHCTTT---SS.CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHH CS
     GST_C_2   4 veraleqldaaldaleahLadspflfGdqptlaDialapflvrlraagpgfdireaypnlraWl 67 
                 v++al ++++++  +ea+L+  ++l+ + ++laD + a+ + r   +  g  +r+++p + +W+
  CCD25120.1 129 VDAALVKIEEMVTIFEARLRNYTYLATESISLADLVCAAIFTRGFNYLFGKQWRDEHPIIMRWF 192
                 67889999**************************777766665555555899***********7 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.7e-07    0.0008      19      74 ..      23      77 ..      14      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.7e-07
                HHT--EEEE---TTTTHHHHHHH-TT--SSEEE.TTS-EEESHHHHHHHHHHHH-GG CS
     GST_N_3 19 ekglpvevvevtpgehdeellaknplgkvPvLe.ddgealtdSlaIidyLeelypgp 74
                  +l+v++  v+p++  e++ +  pl+kvP+++ + g +lt+S aI  yL +l +++
  CCD25120.1 23 TFNLDVKL--VEPEKAQEQFARDFPLKKVPAFVgPKGFKLTESMAINFYLISLSDDE 77
                55666666..55788889***************667**************9998865 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.1e-06    0.0032      19      93 ..     126     202 ..     105     206 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.1e-06
                 HHHHHHHHHHHHCHHHHHHHHHHCHGTSSSSTTS--HHHHHHHHHHH.HHHHH...TCCCC-HHHHHHHHHHHTSHHHH CS
     GST_C_3  19 ekkkefleerlpkflkyfekvlkkkgggylvgdklTyADlalfqvld.gleea...ealkkfpklkalyervearpkik 93 
                 +kk +    +++++++ fe  l   + +yl+ +++++ADl++ +++  g++++   ++ +++p ++++ + + a p +k
  CCD25120.1 126 KKKVDAALVKIEEMVTIFEARLR--NYTYLATESISLADLVCAAIFTrGFNYLfgkQWRDEHPIIMRWFNTIIASPILK 202
                 56666677789999999999999..999*************9997651666669644449***********99999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       830  (0.0462937); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3003.89
//
Query:       CCD25121.1  [L=99]
Description: hypothetical protein NDAI_0E03040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-21   75.7   0.1    2.1e-21   75.2   0.1    1.2  1  Sgf11_N        SAGA-associated factor 11 N-terminal domain
    2.8e-16   58.7   4.4    6.1e-16   57.7   4.4    1.5  2  Sgf11          Sgf11 (transcriptional regulation protein)
     0.0043   16.9   0.0     0.0043   16.9   0.0    1.1  1  zf-CpG_bind_C  CpG binding protein zinc finger C terminal dom
  ------ inclusion threshold ------
      0.082   12.5   0.3       0.17   11.5   0.1    1.7  2  zf_C2H2_13     Zinc finger domain
      0.093   12.8   0.2       0.77    9.8   0.2    1.9  1  DUF1451        Zinc-ribbon containing domain


Domain annotation for each model (and alignments):
>> Sgf11_N  SAGA-associated factor 11 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.1   5.7e-25   2.1e-21       1      39 []       6      44 ..       6      44 .. 0.97

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 5.7e-25
                HBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
     Sgf11_N  1 eTidSvSegIynNLlTsmIQDIVsretvkqklLksRYPd 39
                e++dSvS+gI++NLlTs+IQDIV+re+vk ++L++RYP+
  CCD25121.1  6 EAVDSVSNGILHNLLTSIIQDIVARERVKVQVLETRYPN 44
                689***********************************7 PP

>> Sgf11  Sgf11 (transcriptional regulation protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1   4.1e+03      13      22 ..      36      45 ..      36      45 .. 0.79
   2 !   57.7   4.4   1.7e-19   6.1e-16       1      33 []      67      99 .]      67      99 .] 0.97

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
                EEEGGGHHHH CS
       Sgf11 13 qiaasRFApH 22
                q+  +R+ +H
  CCD25121.1 36 QVLETRYPNH 45
                6778999888 PP

  == domain 2  score: 57.7 bits;  conditional E-value: 1.7e-19
                GC-EEE-TTTSSEEEGGGHHHHHHHHCHHXXXX CS
       Sgf11  1 kseyvtCpnCgRqiaasRFApHLekClgrgrrr 33
                +s+y++C+nCgR+i+a+RFA+HL++C +rg+rr
  CCD25121.1 67 SSQYFNCLNCGREISANRFAAHLQRCSNRGSRR 99
                58*****************************97 PP

>> zf-CpG_bind_C  CpG binding protein zinc finger C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.2e-06    0.0043      76     108 ..      63      95 ..      22      99 .] 0.85

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.2e-06
  zf-CpG_bind_C  76 deedselsvaCvtCgheislkkalkHmekCfak 108
                    ++++s +   C+ Cg eis++    H+++C ++
     CCD25121.1  63 KRQESSQYFNCLNCGREISANRFAAHLQRCSNR 95 
                    3789999***********************887 PP

>> zf_C2H2_13  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.7   5.9e+03       4      10 ..      21      27 ..      19      31 .. 0.67
   2 ?   11.5   0.1   4.9e-05      0.17      13      38 ..      66      91 ..      60      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.7
  zf_C2H2_13  4 trliedp 10
                t++i+d 
  CCD25121.1 21 TSIIQDI 27
                5677775 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.9e-05
  zf_C2H2_13 13 tnlnYRvCnkCGkPisleaivdHLen 38
                ++++Y  C +CG+ is +   +HL+ 
  CCD25121.1 66 ESSQYFNCLNCGREISANRFAAHLQR 91
                4589999*****************85 PP

>> DUF1451  Zinc-ribbon containing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00022      0.77      62     137 ..       6      94 ..       1      99 [] 0.70

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00022
     DUF1451  62 eewlsldlelieesllealasiaDktqvelaelaedlehagvyq...sGevvglGt.........lvCekCgkelalkk.teeippCpk 137
                 e+ +s+   ++++ l++ + +i  + +v+++ l+++  ++  y+   +G +   G          ++C +Cg+e++ ++ + ++++C++
  CCD25121.1   6 EAVDSVSNGILHNLLTSIIQDIVARERVKVQVLETRYPNHPSYHidnTGTLDIHGApkrqessqyFNCLNCGREISANRfAAHLQRCSN 94 
                 56678888888999999999999999999999999999888887444454444442223333344899999999988752679999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 747.70
//
Query:       CCD25122.1  [L=99]
Description: hypothetical protein NDAI_0E03050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-10   40.3   0.0    4.2e-10   39.7   0.0    1.3  1  Skp1_POZ  Skp1 family, tetramerisation domain


Domain annotation for each model (and alignments):
>> Skp1_POZ  Skp1 family, tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   2.3e-14   4.2e-10       1      61 [.       5      65 ..       5      67 .. 0.97

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 2.3e-14
                SEEEEEETTSCEEEEEHHHHTTSHHHHHHHHCTCCCGTTCEEETTS-HHHHHHHHHHHHHC CS
    Skp1_POZ  1 ksivLqSsDgesfeveeavakkSktikhmiedlgdddkpriplpnvtskiLekvieYckhh 61
                k+i+L+   +++++v+ ++a+ S+++k+m+  +++++ +++ l++ ++  Lekv eY++++
  CCD25122.1  5 KFIKLIGEGDKEYKVSYEAAMVSPVLKTMLQSPFKENAGKVDLTKYSGDTLEKVCEYLEYK 65
                689*******************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 712.72
//
Query:       CCD25123.1  [L=797]
Description: hypothetical protein NDAI_0E03060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-83  278.6  11.1    1.8e-82  276.9   8.5    2.1  2  Vps16_C   Vps16, C-terminal region
    4.7e-58  196.9   0.5    5.8e-47  160.3   0.0    2.3  2  Vps16_N   Vps16, N-terminal region


Domain annotation for each model (and alignments):
>> Vps16_C  Vps16, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.1   0.0    0.0093        83     155     199 ..     380     425 ..     350     428 .. 0.75
   2 !  276.9   8.5   2.1e-86   1.8e-82       3     317 ..     479     794 ..     477     797 .] 0.97

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.0093
     Vps16_C 155 qlkLlklqktledkf.avsfvglsldetvskLiligqdkraeklrk 199
                 ++k+l+  ++++  +  v+f ++++  +v++L+ ig+  +a +l k
  CCD25123.1 380 TVKMLIQLRRIGIFLtKVQFDNITIIGIVKTLLWIGKYSEATELCK 425
                 3555555555555441599*********************999865 PP

  == domain 2  score: 276.9 bits;  conditional E-value: 2.1e-86
     Vps16_C   3 yvkiAkkAyqeGRleLsikLlelEkraeeqvelLlklekselAlkkaiesgdteLiisvllelkkklalsdlfkllredplalklYkkfmkksdratLy 101
                 +  +A++A++eGR++L++ L+ lE+  e ++  Llkl++++lAl + ++++  eL++s+ll+l++kl + +l+kll+ d+   +lY +f + ++ ++L 
  CCD25123.1 479 MAILARVAFLEGRFKLARSLALLESSPELKIAGLLKLDDNNLALTESLKVQSPELTLSLLLNLEEKLSKVQLTKLLILDMPHYQLYPYFQR-HNYEYLF 576
                 6678***************************************************************************************.899**** PP

     Vps16_C 102 dlynqdDnkqelaelllqdalkeveglesaLksiadvysqaknsel...eakliedqlkLlklqktledkfavsfvglsldetvskLiligqdkraekl 197
                 d+y+q D+ ++l++l++q++ ke ++l+++L+ i+d+y +  n  l    a+l+e q kLl++q +l + f+++fv ++ld+t+skLi++ q+k +++l
  CCD25123.1 577 DFYRQMDKLIDLGQLMMQQG-KELNSLQTFLPPIQDLYRKMSNNPLirqDAELLERQEKLLQYQDSLTNIFGINFVIMTLDQTLSKLIEMEQHKYIKEL 674
                 ********************.9******************99987733357899*9******************************************* PP

     Vps16_C 198 rkdFkipekrlywLklkaLvelkkweelekfakSkkSPiGyePFvevllkqgnkkeAkkYipritglstqekvklyvevgdvkeAielAakekdvseLk 296
                  k+Fki + ++y++k++ Lv+ +  +el++fa  kkSPiGy PF++ l ++g  +eA+ Y++ +t   + +k++ly+ ++++ke i +A+ke d+ +Lk
  CCD25123.1 675 TKKFKINDLKFYHIKCRVLVKHNRLDELKEFATHKKSPIGYYPFYKCLRSKGYNQEAATYVELMTAAPYAKKKELYLACKGYKELIAMAGKESDIVTLK 773
                 *************************************************************************************************** PP

     Vps16_C 297 ellervatveeellaskvqda 317
                 el+++++++e+e +a+  ++ 
  CCD25123.1 774 ELYKIIPPNEPEIKALITETL 794
                 *************99877765 PP

>> Vps16_N  Vps16, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.2   1.2e-12     1e-08       1     198 [.       6     189 ..       6     195 .. 0.82
   2 !  160.3   0.0   6.5e-51   5.8e-47     240     409 ..     204     373 ..     200     374 .. 0.96

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 1.2e-12
     Vps16_N   1 psaewellkdsyyrkeelgtadwelkeevedllv.avapygGpiAvtrspsklepaadarPvyiqiyslsGrlLkkllwnk.eklvklgwse..eeeLi 95 
                 ps +we+l+d++yr++ l +    lk +  +l   +v + +  i ++ ++             iqiy+    l+ ++ ++k e+++   ++   +e+L+
  CCD25123.1   6 PSLNWEKLQDVFYRNNLLCEFPESLKSKAAQLDNkNVIVSSMFIGIKNKE------------NIQIYNRQQGLIDTVRFDKsEQIIDACFEPlfNEKLV 92 
                 689***************99888888877555331344444456665555............49****************9899**977774449**** PP

     Vps16_N  96 vvqkagavlvygllGeksfsigeevesvkvre..crifatsagesGvavltksgrvilvnnveeelklrkkpeipnlltefqnaeslteiilLlvdevv 192
                 +v+    ++v +l        + e+ ++++ e   r ++++++ +Gv++l +s++++++ n + el l++  +  +llt+ ++ ++ + iilL++d+v+
  CCD25123.1  93 IVTATDLKIVNKL-------DPLEIINISLPEdvVRNDHIWDYRNGVVILRNSKDIYKLRNGKLELVLKNN-NRFTLLTKDNWDCNGEYIILLDIDNVY 183
                 ************9.......466776666666223569*************************9*996665.6678899999***************** PP

     Vps16_N 193 qillav 198
                 +++l+ 
  CCD25123.1 184 KVSLTT 189
                 **9875 PP

  == domain 2  score: 160.3 bits;  conditional E-value: 6.5e-51
     Vps16_N 240 illisvdlskklleleldakdipkqiaWvgndaVvvsfesllvlvgkagdsvqflydetan.lsaEvDGvriltkssveflrrvpaasenifaigskeP 337
                 +l+++ +++k+l+e++ld  + p qi+W++nd V++sfe+++ l+g++g +v+f+y+++ + +s+ +DG++++t +++ f++++  +++n+f+igs+eP
  CCD25123.1 204 KLQVFKNPEKILMEHNLD--KLPFQIQWCANDVVACSFEDEVYLMGPDGVYVTFWYPNDVIaISTAIDGLQVITGNETFFISKIVDCTSNVFRIGSTEP 300
                 568999************..9**************************************766************************************* PP

     Vps16_N 338 galLveaqkkleeksskadeiLkeikd.klekavddCieaaldefqpelQKlLLraAsfGkaflrnknpdeyv 409
                 ga L+++ + + e+   a e Lk++   +l k+v dCi+a+++e+  e+QK LL +AsfGk++l +k++d+++
  CCD25123.1 301 GAILFDSWNLVTEHPAEAVEGLKNLGSeNLMKGVIDCIDASMYEWDSEIQKALLSTASFGKNSLPYKTFDSSI 373
                 ************************96449*****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       795  (0.0443416); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5311.14
//
Query:       CCD25124.1  [L=701]
Description: hypothetical protein NDAI_0E03070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-53  177.8   0.1    5.2e-17   61.4   0.1    5.5  5  RRM_1       RNA recognition motif. (a.k.a. RRM, RBD, or RNP d
      4e-09   36.5   0.0      0.026   14.7   0.0    4.3  4  RRM_7       RNA recognition motif
    7.3e-06   26.3   6.6       0.12   12.7   0.1    5.8  8  PHM7_cyt    Cytosolic domain of 10TM putative phosphate trans
     0.0069   16.2   0.0        3.8    7.3   0.0    2.8  2  RRM_Rrp7    Rrp7 RRM-like N-terminal domain
  ------ inclusion threshold ------
       0.81    8.8  11.6       0.12   11.5   3.4    2.6  2  TRAP_alpha  Translocon-associated protein (TRAP), alpha subun


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.1   1.4e-20   5.2e-17       1      69 [.      28      96 ..      28      97 .. 0.98
   2 !   36.3   0.0     1e-12   3.7e-09       1      69 [.     151     220 ..     151     221 .. 0.94
   3 !   51.5   0.0   1.8e-17   6.6e-14       1      59 [.     304     363 ..     304     367 .. 0.96
   4 !    4.5   0.0    0.0085        31       2      18 ..     477     493 ..     476     504 .. 0.90
   5 !   17.0   0.0   1.1e-06    0.0038      23      56 ..     545     582 ..     542     596 .. 0.80

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 1.4e-20
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69
                lfV+ +p dvt+eeL ++Fs+f p k++ +v+d ++ks+gf+fV F+ ++d ++Al++   +kl+g+ l
  CCD25124.1 28 LFVRSIPMDVTDEELTDYFSNFAPTKHAVVVKDVNKKSRGFGFVSFAVEDDTKEALKKARQTKLKGHLL 96
                8*****************************************************************977 PP

  == domain 2  score: 36.3 bits;  conditional E-value: 1e-12
                 EEEESETTTS.SHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdv.teeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+++n p+++ + e+Lk++F+ fG +++++++r+++gk  gfafV++++ ++   Ale+    k++gr++
  CCD25124.1 151 LIIRNMPWSCrDPEKLKKVFGRFGNVVEATIPRKRDGKLCGFAFVTMKKLSNCHLALENTKDLKIDGRPV 220
                 6899*****94469**********************************************9999999976 PP

  == domain 3  score: 51.5 bits;  conditional E-value: 1.8e-17
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAleal 59 
                 +fV+n+p+d+tee L ++FskfG +k +  v d +tg +kg+afV F++    + ++++ 
  CCD25124.1 304 IFVRNVPYDATEESLAAHFSKFGLVKYALPVIDrATGLAKGTAFVAFKDAMTYKYCIDNA 363
                 8*******************************************************9976 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.0085
                 EEESETTTSSHHHHHHH CS
       RRM_1   2 fVgnLppdvteeeLkel 18 
                  ++nLp+ +t++ Lk+l
  CCD25124.1 477 AIRNLPRAMTDKALKAL 493
                 69************987 PP

  == domain 5  score: 17.0 bits;  conditional E-value: 1.1e-06
                 SCEEEEEEEEE....TTTSEEEEEEEEESSHHHHHHHH CS
       RRM_1  23 Gpiksiklvrd....etgkskgfafVeFeskedAekAl 56 
                 G +k +k++ +    + g+s+g++f+e++++++A   l
  CCD25124.1 545 GLVKQAKIIMEvkgsSAGRSRGYGFIEYKDHRSALMGL 582
                 77778888777777889****************97655 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   9.6e-06     0.034       4      74 ..      28      90 ..      25     109 .. 0.72
   2 ?    1.5   0.0     0.091   3.3e+02       3      35 ..     150     184 ..     148     210 .. 0.76
   3 !   14.7   0.0   7.1e-06     0.026       4      58 ..     304     351 ..     302     372 .. 0.73
   4 ?   -1.9   0.0         1   3.7e+03      47      63 ..     562     578 ..     538     596 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 9.6e-06
       RRM_7  4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLleacteee 74
                +Fv  +P+D+t+eel++ f++f++++         +   ++++k  +g+ f+ f  e+  k+ l+++ + +
  CCD25124.1 28 LFVRSIPMDVTDEELTDYFSNFAPTKH--------AVVVKDVNKKSRGFGFVSFAVEDDTKEALKKARQTK 90
                799*******************97642........233333344456888888888888888888887776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.091
       RRM_7   3 kvFvGGlPiDite.eelkatfkefgkvl.vdwPkk 35 
                 k+ +  +P+   + e+lk+ f++fg+v+    P+k
  CCD25124.1 150 KLIIRNMPWSCRDpEKLKKVFGRFGNVVeATIPRK 184
                 6667778998865378*********9752445555 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 7.1e-06
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfe 58 
                 +Fv  +P D tee+l a f++fg v+   P   + +  a+       g +f+ f+
  CCD25124.1 304 IFVRNVPYDATEESLAAHFSKFGLVKYALPVIDRATGLAK-------GTAFVAFK 351
                 8*************************99998876654432.......33333333 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1
       RRM_7  47 kaakgyvflvfedeksv 63 
                    +gy f+ ++d++s 
  CCD25124.1 562 GRSRGYGFIEYKDHRSA 578
                 34579****99999885 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   3.2e-05      0.12       2      43 ..      26      63 ..      25      66 .. 0.84
   2 ?    1.1   0.0      0.11     4e+02     116     142 ..      60      89 ..      57     103 .. 0.76
   3 !    4.6   0.0    0.0097        35       4      27 ..     151     174 ..     150     185 .. 0.84
   4 ?   -2.3   0.0       1.2   4.4e+03     120     140 ..     188     208 ..     177     220 .. 0.75
   5 !    6.3   0.0    0.0028        10       1      28 [.     301     327 ..     301     338 .. 0.87
   6 ?   -2.8   0.0       1.8   6.6e+03     121     138 ..     342     359 ..     335     366 .. 0.75
   7 ?   -0.5   0.0      0.35   1.3e+03     114     136 ..     557     579 ..     477     609 .. 0.74
   8 ?   -3.3   0.4       2.6   9.2e+03     113     119 ..     645     651 ..     616     681 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 3.2e-05
    PHM7_cyt  2 rTvlvtgiPkelrseeklkeffeelypgkvvesvqivrdvkk 43
                +T++v++iP +++ +e+l ++f+++ p+k   +  +v+dv+k
  CCD25124.1 26 KTLFVRSIPMDVT-DEELTDYFSNFAPTK---HAVVVKDVNK 63
                69***********.666********9985...5677777765 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.11
    PHM7_cyt 116 kvkkkplgaaFvtfesersaaavak...qa 142
                  v+kk +g +Fv+f+ e + ++++k   q+
  CCD25124.1  60 DVNKKSRGFGFVSFAVEDDTKEALKkarQT 89 
                 5788999********999999998643322 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0097
    PHM7_cyt   4 vlvtgiPkelrseeklkeffeely 27 
                 ++++++P ++r+ eklk+ f ++ 
  CCD25124.1 151 LIIRNMPWSCRDPEKLKKVFGRFG 174
                 579*****************9864 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.2
    PHM7_cyt 120 kplgaaFvtfesersaaavak 140
                 k  g aFvt+++ +  + +++
  CCD25124.1 188 KLCGFAFVTMKKLSNCHLALE 208
                 557899***999888887765 PP

  == domain 5  score: 6.3 bits;  conditional E-value: 0.0028
    PHM7_cyt   1 srTvlvtgiPkelrseeklkeffeelyp 28 
                 +++++v+++P + + ee+l+ +f+++  
  CCD25124.1 301 DYSIFVRNVPYDAT-EESLAAHFSKFGL 327
                 799***********.999*****99765 PP

  == domain 6  score: -2.8 bits;  conditional E-value: 1.8
    PHM7_cyt 121 plgaaFvtfesersaaav 138
                 ++g aFv f++ +  +++
  CCD25124.1 342 AKGTAFVAFKDAMTYKYC 359
                 5789*****987766554 PP

  == domain 7  score: -0.5 bits;  conditional E-value: 0.35
    PHM7_cyt 114 rekvkkkplgaaFvtfesersaa 136
                 + +   + +g++F+++++ rsa 
  CCD25124.1 557 KGSSAGRSRGYGFIEYKDHRSAL 579
                 33334567888999998888874 PP

  == domain 8  score: -3.3 bits;  conditional E-value: 2.6
    PHM7_cyt 113 erekvkk 119
                  r+++++
  CCD25124.1 645 RRREEDT 651
                 2222222 PP

>> RRM_Rrp7  Rrp7 RRM-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0031        11      35      69 ..      18      56 ..       9      88 .. 0.80
   2 !    7.3   0.0    0.0011       3.8      33      65 ..     295     325 ..     286     352 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0031
    RRM_Rrp7 35 nndee.ssrslFlvNlPiettletlkkffqkv...alga 69
                +nd+  + ++lF+  +P+  t e+l+ +f +    + ++
  CCD25124.1 18 QNDNGlDMKTLFVRSIPMDVTDEELTDYFSNFaptKHAV 56
                444434699********************9985533344 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0011
    RRM_Rrp7  33 tknndeessrslFlvNlPiettletlkkffqkv 65 
                  kn+   ++ s+F+ N+P  +t e l   f k 
  CCD25124.1 295 GKNKR--EDYSIFVRNVPYDATEESLAAHFSKF 325
                 34444..569****************9999876 PP

>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.4   3.4e-05      0.12      26     100 ..     243     325 ..     225     363 .. 0.59
   2 ?    1.2   1.2     0.048   1.7e+02      26      76 ..     636     687 ..     617     700 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.4e-05
  TRAP_alpha  26 aaaaeedevddelvdveaedeeveeeee.eeeeeeeeeeedee.......elkaspdadttilFtkpv.ekaeeelpageivef 100
                 +++ + d+ d++ +dv++e+ +++e ++ +e++e +eeee+ee         k + + + + +F++ v  +a+ee  a + ++f
  CCD25124.1 243 ESKVNADREDED-MDVSSEEPANNEGDKhTEDSEGDEEEEEEElevkeerPRKGKNKREDYSIFVRNVpYDATEESLAAHFSKF 325
                 333333333333.455554433333322022223332222222333333355666778899*****998666666666666666 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.048
  TRAP_alpha  26 aaaaeedevddelvdveaedeeveeeeeeeeeeeeeeeedeeelka.spdad 76 
                 ++++ e++     +d++ e +e++++++++++ ++ e +d+++++  s d++
  CCD25124.1 636 TQYSRENSKRRREEDTKPEVAETSNKKAKKDAAKQVEASDNKKSSGmSDDVK 687
                 3344444444445677777777777777777777766666665544044444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1461  (0.0814881); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.43
# Mc/sec: 4931.98
//
Query:       CCD25125.1  [L=638]
Description: hypothetical protein NDAI_0E03080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.1e-55  187.4   2.2    4.3e-54  183.7   0.0    2.7  3  Pkinase      Protein kinase domain
    7.2e-25   87.7   5.0    8.5e-25   87.5   0.2    2.5  3  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.16   1.4e+03     190     227 ..       1      40 [.       1      55 [. 0.50
   2 !    2.4   0.0    0.0093        84       2      24 ..     119     141 ..     118     181 .. 0.77
   3 !  183.7   0.0   4.8e-58   4.3e-54      20     264 .]     253     543 ..     245     543 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.16
                 HHHSS-STTTSSHHHHHHHHHHT..HHHHHHHCTSHH... CS
     Pkinase 190 lltgkppfsgekgkekvekeldq..lekilkilgetkekl 227
                 +++g++p+++++ +++ +++ ++   ++ ++++++ ++++
  CCD25125.1   1 MYNGNNPYQQSNLRSTENQQQQNqaAQQNQQLMQQPSQQY 40 
                 6678888886665443333322212333334443333333 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.0093
                 EEEEEEEEESSEEEEEEEETTTT CS
     Pkinase   2 ekleklGeGsfGkVykaveketg 24 
                 e +  +  G++GkVyka++k ++
  CCD25125.1 119 EIIGYIAAGTYGKVYKAKRKVQQ 141
                 56667889*********987665 PP

  == domain 3  score: 183.7 bits;  conditional E-value: 4.8e-58
                 ETTTTEEEEEEEEECHCHCHHHH......HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.....HHSS--HHHHHHHHHHH CS
     Pkinase  20 eketgkivAvKkikkekakkkke......kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle.....rkgslseeeakkiakqi 107
                 ++ ++ i+ +Kk+k+ek+  ++       +++ rE+++ ++l+ +++ +l+e+f e +++y+v ey+e + l ++++     +k++++++ +++i++qi
  CCD25125.1 253 KSLSQIIMLLKKFKTEKEGLEQLhytgisQSACREMSLCRELNNKHLTKLVEIFLERKSIYMVYEYAEYD-LLQIIHfhshpEKRMIPPRMIRSIMWQI 350
                 455677888999999999988778999999**************************************87.777777788888999************* PP

                 HHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS....BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSS CS
     Pkinase 108 legleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk....ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkppfsgek 201
                 l g++ylH++ ++HrDlKp+Ni++  +g +Ki+D+Gla+++ +  +     +++v+t +Y+APE+l ++++y++++D+W++G+i++el+  +p+f+ge+
  CCD25125.1 351 LDGVSYLHQNWVLHRDLKPANIMVTVDGCVKIGDLGLARKFFNMVQtlytGDKVVVTIWYRAPELLlGARHYTPAIDLWAVGCIFAELIGLQPIFKGEE 449
                 ****************************************9999988988899*************999***************************988 PP

                 HHHHHHH....HHHTHHHHHHHCT.SHH...HHHTTS..........................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 202 gkekvek....eldqlekilkilg.etkeklpeasei..........................seeakdllkkllkkdpkkRltaeellqhpyl 264
                  k + +k    +++q+++il++lg +t +++p+ ++                           +++a+dll +ll++dp +R+ a ++l+h+y+
  CCD25125.1 450 AKMDSKKsvpfQANQIQRILEVLGsPTLKTWPNINKYpeydqlmkfqrykdnlptwyhstggrDKSALDLLYQLLRYDPISRIDAVDALDHHYF 543
                 7766555111144556666666657444455555555788888*************************************************98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.5      0.31   2.8e+03     202     240 ..       4      35 ..       1      45 [. 0.49
   2 ?    1.9   0.0     0.012   1.1e+02       6      27 ..     123     144 ..     118     179 .. 0.79
   3 !   87.5   0.2   9.5e-29   8.5e-25      45     200 ..     281     440 ..     250     470 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.31
                  SSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHH CS
  Pkinase_Tyr 202 gespypglkneevleklkegkrlekpekcpeelyelmkk 240
                  g++py++ + +++ ++ ++++  ++++       +lm++
   CCD25125.1   4 GNNPYQQSNLRSTENQQQQNQAAQQNQ-------QLMQQ 35 
                  555555555444444444444444443.......44444 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.012
                  EEEEESSEEEEEEEEETTTTSS CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekk 27 
                   +++G++GkV++++ k ++ ++
   CCD25125.1 123 YIAAGTYGKVYKAKRKVQQASS 144
                  5889**********99744333 PP

  == domain 3  score: 87.5 bits;  conditional E-value: 9.5e-29
                  HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT...CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEET CS
  Pkinase_Tyr  45 keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk...ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsen 139
                  +++ ++e+++ ++l+++++ kl+ + ++++++++v ey+++ dLl+ ++ +   ek+ +  + + s+++q+ +G++yL+++ ++Hrdl   N++++ +
   CCD25125.1 281 SQSACREMSLCRELNNKHLTKLVEIFLERKSIYMVYEYAEY-DLLQIIHFHshpEKRMIPPRMIRSIMWQILDGVSYLHQNWVLHRDLKPANIMVTVD 377
                  577899**********************************9.566666655445777788888899******************************** PP

                  TEEEE-STTTHEETTTSSEE.EETTSSTSGGGGS-HHHHH.HSEEEHHHHHHHHHHHHHHHHT CS
  Pkinase_Tyr 140 kvvkisDfGLardiekddey.vkkeeaklpvkWmapEslk.ekkftsksDvWsfGvllwEift 200
                   +vki+D GLar+  ++ ++ ++ ++  + + + apE l  ++++t + D W+ G +  E++ 
   CCD25125.1 378 GCVKIGDLGLARKFFNMVQTlYTGDKVVVTIWYRAPELLLgARHYTPAIDLWAVGCIFAELIG 440
                  **************88877735556666666667***9861566****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1589  (0.0886274); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4372.86
//
Query:       CCD25126.1  [L=264]
Description: hypothetical protein NDAI_0E03090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-22   79.9   0.0    2.7e-22   79.0   0.0    1.5  1  FLILHELTA  Hypothetical protein FLILHELTA


Domain annotation for each model (and alignments):
>> FLILHELTA  Hypothetical protein FLILHELTA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   1.5e-26   2.7e-22       1      83 [.     123     206 ..     123     210 .. 0.89

  Alignments for each domain:
  == domain 1  score: 79.0 bits;  conditional E-value: 1.5e-26
   FLILHELTA   1 rllkrl...PkflrkytrklrsapvshvtsFLiLHElTAivPllglfalfhyldleed..eellpaalvseaveegverferylrkk.g 83 
                 ++l+rl   Pkf+++++r ++++++ +vtsFL+LHElTAi Pll l+++f++ld+e +  +  lp+     ++++++er++++++k+ g
  CCD25126.1 123 KVLTRLndnPKFSHYFNRLSETGTIPTVTSFLLLHELTAIAPLLLLWWIFYNLDFEGEstSFELPD-----YIHDLLERCNKAIDKLvG 206
                 6899**************************************************877743224777.....*************99855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1929.20
//
Query:       CCD25127.1  [L=1013]
Description: hypothetical protein NDAI_0E03100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.6e-162  541.9   0.2   2.3e-162  541.4   0.2    1.1  1  tRNA-synt_1    tRNA synthetases class I (I, L, M and V)
    2.5e-23   82.5   0.3    1.9e-12   46.6   0.0    3.5  3  tRNA-synt_1g   tRNA synthetases class I (M)
    1.1e-19   70.9   0.9    1.1e-19   70.9   0.9    2.2  2  Anticodon_1    Anticodon-binding domain of tRNA
     0.0042   16.6   0.1      0.045   13.3   0.0    2.3  2  tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
  ------ inclusion threshold ------
      0.032   13.6   0.0        5.8    6.2   0.0    2.5  2  tRNA-synt_1e   tRNA synthetases class I (C) catalytic domain
        1.3    9.1   3.6        2.6    8.2   3.6    1.4  1  DZR            Double zinc ribbon


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  541.4   0.2  7.7e-166  2.3e-162      21     601 ..      79     726 ..      63     727 .. 0.92

  Alignments for each domain:
  == domain 1  score: 541.4 bits;  conditional E-value: 7.7e-166
  tRNA-synt_1  21 ekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgreefrekvrewkaeyaeeirkq 118
                  +k+ fil+dgPPy++G lH+Gha++k+lkdi+iry++ +Gk+  y+pGwD++Gl+ie kv k++ ++e    ++++  ++r   ++++ + ++++++q
   CCD25127.1  79 KKNLFILHDGPPYANGDLHLGHAVNKILKDIIIRYQKSTGKYIFYKPGWDCHGLPIELKVLKNFSKDE---LQNVSPLKIRSLAKKHALKTIKDQKRQ 173
                  4677***********************************************************96666...68999999******************* PP

  tRNA-synt_1 119 vkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEvey.kdkkdalihvafpladkee................ 199
                  ++++G+ +D+d++y+Tl+k++e ++ ++f ++++ gli r +k+v+w t++ktal+e E ey k++k+++ +v+fpl+ k++                
   CCD25127.1 174 FEQFGIFTDWDDPYITLNKDYELNQLRIFHKMFKLGLIKRQNKPVFWGTETKTALAESELEYnKEHKSTSAYVQFPLSRKSQtlfleklgmtvgsmns 271
                  ************************************************************7638999**********888888999999999999999 PP

  tRNA-synt_1 200 vklviaTTtPeTllgdtavavnpeldyv...........itkeklilaeallkslvkkesekkiledergkeLegkevelpl..vnrkipiiaddyvd 284
                  +   i+TTtP+Tl++++a++ n+ ++y+            + + li+  +l+++++k++++++il+++ g+ Le +++++pl  +n + p+++ d+v+
   CCD25127.1 272 IDCLIWTTTPWTLFSNKAICFNKHFEYSlvtssksaenyNKPDLLIIETNLISQVYKQKEDYTILKTFSGEILENLHYTNPLlsNNLEYPLLHADHVT 369
                  99*************************999***99988666677899999********************************888999********** PP

  tRNA-synt_1 285 keaGtGvVkiaPahdedDyevgkkynlevinildedgtlteea..................aefeglkvfdarkkvveelkekglllkaekiehsvpf 364
                  keaGtG+V++aP+h++dDy +g ++nl + +++d++g+++ +                   +  + +    + k ++++l+e  +l+  ++  hs+p+
   CCD25127.1 370 KEAGTGLVHTAPGHGADDYLLGIQNNLIIYSPIDHEGRYKLSElpdnvqqllsdnessspiPVGRSVLDPRTTKLILNKLDELEMLFGCKELVHSYPY 467
                  ***************************************987779999*******99986554555555667899*********************** PP

  tRNA-synt_1 365 cerskkpiiyrateqWfvrvkeladaalkave..kvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsk.eteevvvreelkelvagreeee 459
                  ++rskkp+i rat+qWf ++++++  a+++++   v+f p+++++r  s+++n+++WciSRqr+WG++ip+f++  + +e+ ++ee+ e+v ++ e++
   CCD25127.1 468 DWRSKKPVILRATPQWFLNLNKVKTLAMESLDkkGVEFFPERGKTRLLSFIKNRNEWCISRQRVWGVPIPAFYKIsNPDELLMTEEIIEHVIKTIESN 565
                  *****************************998778*************************************9861568999999************* PP

  tRNA-synt_1 460 aekkalekeakdkl......kkekgelekdedvlDvWFsSgswpfstlgypeed...teelkkffpadmlleGlDiirgWvarlillslaltgse..P 546
                  + ++++++++  +       ++ ++e+++  d++DvWF+Sgs+   + ++ +++   ++ ++  + +d+ leG+D++rgW+++l+l+ +a+t ++  P
   CCD25127.1 566 GIDRWFNESVPTEEwlpekyQNIANEYKRGFDTMDVWFDSGSSWKVIEDFYKNTlklNPAYRPKHLFDLCLEGSDQHRGWFQSLLLTNIAMTMKKvaP 663
                  *****9988754434699878889*****************9999888877663222678888999*******************987766544444* PP

  tRNA-synt_1 547 fkevlvhglvrdeeGrKmSKslgNvidpldvik........kygadalRltlilsdvgrdinl 601
                  + ev++hg+++de+G KmSKs+gN+i+p+dvi+         +g+d lR+++++s+ + di +
   CCD25127.1 664 YSEVITHGFTLDENGIKMSKSIGNTISPKDVIEgnakidilPLGVDGLRYFVAYSNFTTDITI 726
                  *********************************************************999975 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   6.5e-16   1.9e-12       8     136 ..      90     234 ..      85     247 .. 0.76
   2 !   18.0   0.0   3.2e-07   0.00094     174     239 ..     473     538 ..     458     549 .. 0.88
   3 !   13.6   0.0     7e-06     0.021     297     358 ..     648     719 ..     641     738 .. 0.72

  Alignments for each domain:
  == domain 1  score: 46.6 bits;  conditional E-value: 6.5e-16
                   B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHH.......TTS-HHHHHHHHHHH.......HHHHHHHTT-..--SEE CS
  tRNA-synt_1g   8 pYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAek.......egvtpeelvekvhee.......ikelfkklni..sfdky 88 
                   pYang+lHlGh+++ i  Di++Ry++ +g+ +++  g D hG pielk  k       ++v+p ++ + ++++       +k++f++++i   +d+ 
    CCD25127.1  90 PYANGDLHLGHAVNKILKDIIIRYQKSTGKYIFYKPGWDCHGLPIELKVLKnfskdelQNVSPLKIRSLAKKHalktikdQKRQFEQFGIftDWDDP 186
                   9*********************************************987542222223799998876655555001111155666666662223444 PP

                   EETTSHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEE-GGG-E CS
  tRNA-synt_1g  89 grttseehkelvqeifkklkekgliyekeieqlycpkderflpdryve 136
                   + t +++ +    +if+k+ + gli++++  +++ +++++ l+++++e
    CCD25127.1 187 YITLNKDYELNQLRIFHKMFKLGLIKRQNKPVFWGTETKTALAESELE 234
                   45555555556668***************************9998876 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 3.2e-07
                   ...EEE.EEEEEE-GGGGHHHHHHHH.HH-TT.SHHHHHHHH.HHHHT----EE-ESS-SSS-EETT CS
  tRNA-synt_1g 174 skpevketehlffklskfekklkewieeeeke.leenvkkivkewlkegLkdlaisrdldwGipvPg 239
                   +  +++ t ++f++l+k+++   e ++++  e  +e+ k+ +++++k+  ++++isr+  wG+p+P 
    CCD25127.1 473 KPVILRATPQWFLNLNKVKTLAMESLDKKGVEfFPERGKTRLLSFIKN-RNEWCISRQRVWGVPIPA 538
                   44478999***************99999988899*************9.89***************4 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 7e-06
                   HTHHHHHHHH.TT----S-EEEE--.EEE--------------HHHHHHH.H-.......HHHHHHHHHHHS CS
  tRNA-synt_1g 297 tifwPaillg.aelklpkkvvahey.ltvegkKlSkSrgvvvkakealer.ld.......adllRYylaaea 358
                   +++++ i +  +++   ++v++h++ l  +g K+SkS g+ + +k+++e   +       +d lRY++a+++
    CCD25127.1 648 SLLLTNIAMTmKKVAPYSEVITHGFtLDENGIKMSKSIGNTISPKDVIEGnAKidilplgVDGLRYFVAYSN 719
                   5555555555567777899******4456788************99987432211333448999*9998754 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.97   2.9e+03      84     115 ..     550     589 ..     549     623 .. 0.65
   2 !   70.9   0.9   3.6e-23   1.1e-19       1     134 [.     770     907 ..     770     914 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.97
  Anticodon_1  84 itEelwqr.....eeeelgkk..esimlaew.pekaeele 115
                  +tEe+ ++     e++ +++   es+  +ew pek++   
   CCD25127.1 550 MTEEIIEHviktiESNGIDRWfnESVPTEEWlPEKYQNIA 589
                  6888888776666444444435577777776454554433 PP

  == domain 2  score: 70.9 bits;  conditional E-value: 3.6e-23
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk.ra.aqevllevletllrllaPfmPfitEelwqr.eeee 95 
                  d+ +ls ln+l+  +++ yeey+f+k+++ l++ ++n+l+ +y++++k+ lys+s ++k r+ +q+vl+ +l+ ++ +l+P++P + +e+ ++ ++e 
   CCD25127.1 770 DKFVLSNLNELLVNTKQLYEEYNFSKILTLLQHHLTNELSAVYFDISKDSLYSDSMTSKkRQsIQTVLFSILQVYCNILYPILPTLVQEVRNNiRKEW 867
                  7899********************************************************999****************************8897778 PP

  Anticodon_1  96 lgkkesimlaewpe.kaeelekel.eeeevellkeivkair 134
                  ++++++ +  +w+  + + ++ ++ +e+e+++lk+  ++++
   CCD25127.1 868 INNNNTAFI-PWEGfQLSHNNSTHfQEKEMQILKKFQELMG 907
                  888888866.8986555444444444999999998877766 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.15   4.6e+02      47      80 ..      45      80 ..      41      84 .. 0.78
   2 !   13.3   0.0   1.5e-05     0.045      62     144 ..     323     406 ..     261     424 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.15
  tRNA-synt_1_2 47 lvekl..aekkkelaafieevkkksesereletkek 80
                   l+ ++  ++ k +l++fi++v++ ++ + +l+  +k
     CCD25127.1 45 LIPQCsqEQYKTQLSEFIDKVNQIDNDQDKLAFIKK 80
                   5555554677899************99988876665 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 1.5e-05
  tRNA-synt_1_2  62 ieevkkksesereletkekeGvftglkaihPitgek..ipiwvanyvlmeygtgavmavPahdqrDfeFakkynlpikqvikped 144
                    i++v k++e  + l ++    + ++l+ ++P+ +++   p+  a++v  e gtg v + P+h   D+    + nl i   i +e+
     CCD25127.1 323 ISQVYKQKEDYTIL-KTFSGEILENLHYTNPLLSNNleYPLLHADHVTKEAGTGLVHTAPGHGADDYLLGIQNNLIIYSPIDHEG 406
                    44444444444322.2233347999******985542279***************************999999998887777655 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0    0.0052        15      21      48 ..      94     121 ..      80     172 .. 0.91
   2 ?    6.2   0.0    0.0019       5.8     241     270 ..     668     697 ..     652     735 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0052
                   S--BHHHHHHHHHHHHHHHHHHHTT-EE CS
  tRNA-synt_1e  21 dashlGhaRslvafDilrrilqalgYdv 48 
                    + hlGha + +  Di+ r+ +++g  +
    CCD25127.1  94 GDLHLGHAVNKILKDIIIRYQKSTGKYI 121
                   679*****************99988655 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0019
                   EEEE--EEETTBE--TTTT---BHHHHHTT CS
  tRNA-synt_1e 241 flhnghlkiegekmsksLknfitikdvlkk 270
                     h   l  +g kmsks++n i+ kdv++ 
    CCD25127.1 668 ITHGFTLDENGIKMSKSIGNTISPKDVIEG 697
                   556667778899**************9974 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.6   0.00086       2.6       1      24 [.     985    1009 ..     985    1012 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00086
         DZR    1 CpqCgeelppdar.fCseCgtklka 24  
                  Cp+C+++ +++a   C++C++++++
  CCD25127.1  985 CPRCWKQSSNEADtLCHRCKEAVNE 1009
                  *******99998879*****99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1013 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       911  (0.0508115); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.59
# Mc/sec: 5152.28
//
Query:       CCD25128.1  [L=300]
Description: hypothetical protein NDAI_0E03110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2232.06
//
Query:       CCD25129.1  [L=239]
Description: hypothetical protein NDAI_0E03120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.3e-09   36.2   3.1     0.0011   19.7   0.1    2.6  2  zf-C2H2_4     C2H2-type zinc finger
    4.4e-07   30.0   4.2     0.0023   18.3   0.2    2.6  2  zf-C2H2       Zinc finger, C2H2 type
     0.0026   17.7   2.5       0.64   10.1   0.1    2.4  2  zf-C2H2_6     C2H2-type zinc finger
  ------ inclusion threshold ------
      0.012   16.2   3.7      0.056   14.1   0.6    2.7  3  zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
      0.052   13.9   0.4       0.42   11.0   0.0    2.4  2  zf-C2H2_jaz   Zinc-finger double-stranded RNA-binding
      0.061   13.1   2.1       0.49   10.2   0.1    2.5  2  zf-C2H2_11    zinc-finger C2H2-type
       0.13   11.8   1.4        8.2    6.1   0.1    2.4  2  zf_UBZ        Ubiquitin-Binding Zinc Finger
       0.61   10.4   3.6       0.28   11.5   0.9    1.7  2  PSCyt3        Protein of unknown function (DUF1588)


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.5   4.6e-06      0.01       1      23 [.     158     180 ..     158     181 .. 0.97
   2 !   19.7   0.1   4.8e-07    0.0011       2      22 ..     187     207 ..     186     209 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.6e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 ++C+ C   F + ++L+rH k+h
  CCD25129.1 158 YPCSKCELEFLRTSDLRRHEKAH 180
                 89********************9 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 4.8e-07
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkt 22 
                 +C++Cgk F +k+aL+rH++t
  CCD25129.1 187 ICSQCGKGFARKDALKRHFNT 207
                 6*****************987 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.6   6.4e-05      0.14       1      23 []     158     180 ..     158     180 .. 0.96
   2 !   18.3   0.2     1e-06    0.0023       3      21 ..     188     206 ..     187     207 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.4e-05
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y+C++C   F r s+L+rH + H
  CCD25129.1 158 YPCSKCELEFLRTSDLRRHEKAH 180
                 99*****************9988 PP

  == domain 2  score: 18.3 bits;  conditional E-value: 1e-06
                 ETTTTEEESSHHHHHHHHH CS
     zf-C2H2   3 CpdCgksFkrksnLkrHir 21 
                 C+ Cgk F rk+ LkrH +
  CCD25129.1 188 CSQCGKGFARKDALKRHFN 206
                 *****************76 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.3     0.002       4.6       1      24 [.     157     180 ..     157     181 .. 0.93
   2 !   10.1   0.1   0.00028      0.64       3      20 ..     187     204 ..     187     204 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.002
   zf-C2H2_6   1 vheCsvCsksFpslqaLggHkksH 24 
                 ++ Cs C  +F    +L+ H k H
  CCD25129.1 157 RYPCSKCELEFLRTSDLRRHEKAH 180
                 599*****************9999 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00028
   zf-C2H2_6   3 eCsvCsksFpslqaLggH 20 
                 +Cs+C+k F   +aL  H
  CCD25129.1 187 ICSQCGKGFARKDALKRH 204
                 6*********99999666 PP

>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.4   3.2e+03      64      92 ..      50      78 ..      33      97 .. 0.58
   2 ?   14.1   0.6   2.5e-05     0.056      65     124 ..     124     180 ..     104     182 .. 0.61
   3 ?    1.8   0.0      0.16   3.6e+02      35      58 ..     188     211 ..     183     234 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.4
  zf-C2H2_3rep 64 kvaqkknlsasedssqklelsksasvenn 92
                   +aq ++ s s++ss+ +  +++++++++
    CCD25129.1 50 SSAQSPKRSISSESSSSPTIENINFLTDS 78
                  33444444555555555555555555433 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.5e-05
  zf-C2H2_3rep  65 vaqkknlsasedssqklelsksasvennsenesgvrkfvcrfcGlkfdllpdlGrhhqaa 124
                   +++ ++   ++ ss+ +  +k++  ++ +  ++ +r++ c  c l f    dl rh +a 
    CCD25129.1 124 TTTSNKKV-TKPSSKGK--TKKNHATSPTAAANHNRRYPCSKCELEFLRTSDLRRHEKAH 180
                   22222222.12122222..2222233456677789******************9998874 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.16
  zf-C2H2_3rep  35 cipcgshfgnaeelwlhvlsvhps 58 
                   c  cg  f+ ++ l  h  ++  +
    CCD25129.1 188 CSQCGKGFARKDALKRHFNTMTCQ 211
                   778999999999999988776555 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.47   1.1e+03       4      22 ..     160     178 ..     157     178 .. 0.82
   2 ?   11.0   0.0   0.00019      0.42       3      23 ..     187     207 ..     185     207 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.47
                  BTTTTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHlk 22 
                  C  C+  F   ++l+ H+k
   CCD25129.1 160 CSKCELEFLRTSDLRRHEK 178
                  6668999999999****97 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00019
                  BBTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   3 YCvlCdKyFksenaldnHlkS 23 
                   C  C K F    al+ H+++
   CCD25129.1 187 ICSQCGKGFARKDALKRHFNT 207
                  699****************96 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2     0.084   1.9e+02       7      23 ..     160     176 ..     158     178 .. 0.87
   2 ?   10.2   0.1   0.00022      0.49       7      24 ..     188     205 ..     187     208 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.084
  zf-C2H2_11   7 CleCGlcftSqlsLsRH 23 
                 C +C l f     L+RH
  CCD25129.1 160 CSKCELEFLRTSDLRRH 176
                 999**999888889999 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00022
  zf-C2H2_11   7 CleCGlcftSqlsLsRHl 24 
                 C +CG  f+ + +L+RH 
  CCD25129.1 188 CSQCGKGFARKDALKRHF 205
                 9****************5 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1    0.0037       8.2       3      20 ..     158     176 ..     156     177 .. 0.83
   2 ?    4.4   0.1     0.012        28       4      13 ..     187     196 ..     186     202 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0037
      zf_UBZ   3 ylCerCgkeipes.elqEH 20 
                 y+C++C  e++ + +l  H
  CCD25129.1 158 YPCSKCELEFLRTsDLRRH 176
                 9******999988777777 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.012
      zf_UBZ   4 lCerCgkeip 13 
                 +C++Cgk + 
  CCD25129.1 187 ICSQCGKGFA 196
                 6*****9876 PP

>> PSCyt3  Protein of unknown function (DUF1588)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.9   0.00012      0.28      12      74 ..      91     163 ..      87     167 .. 0.68
   2 ?   -2.9   0.1       3.7   8.3e+03      59      73 ..     198     212 ..     183     223 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00012
      PSCyt3  12 tvtskeeetspvkRgkwvr..eklLceklppppanv..pel.keeeeee.....lttrerleahrsaeaCasC 74 
                 t++s++++tspv+R + ++  ++++ +++++ p++   +++ k++++ +     +t     ++h+++  C++C
  CCD25129.1  91 TSSSYNHATSPVTRTNSLNngNDVFKTDINNSPTTTsnKKVtKPSSKGKtkknhATSPTAAANHNRRYPCSKC 163
                 678999************83358*******9999985423322222222333334555556666666669999 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 3.7
      PSCyt3  59 rerleahrsaeaCas 73 
                 ++ l++h ++ +C++
  CCD25129.1 198 KDALKRHFNTMTCQR 212
                 444555555555654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1432  (0.0798706); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1685.08
//
Query:       CCD25130.1  [L=156]
Description: hypothetical protein NDAI_0E03130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-15   57.0   0.1    3.3e-15   55.8   0.1    1.7  1  NAC       NAC domain


Domain annotation for each model (and alignments):
>> NAC  NAC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.1   1.8e-19   3.3e-15       1      57 []      42      98 ..      42      98 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.8 bits;  conditional E-value: 1.8e-19
         NAC  1 ekKlrkalkklglkeipgieeVtirksdgkvlvfdnPkVqkspgsntyvvfGeaeek 57
                ++Kl ++l+k+++ +++++ e++++++dg+v++f+++ Vq +p++nt v++G ++ek
  CCD25130.1 42 DTKLHAQLAKMNAVTVDNVAEANFFREDGSVMHFNRVGVQVAPQHNTSVFYGLPQEK 98
                78*****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1381  (0.077026); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1171.08
//
Query:       CCD25131.1  [L=260]
Description: hypothetical protein NDAI_0E03140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   21.8   2.0    0.00023   21.1   2.0    1.4  1  zf-CCHC    Zinc knuckle
  ------ inclusion threshold ------
       0.12   12.1   1.3       0.28   10.9   1.3    1.6  1  zf-CCHC_4  Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   2.0   2.6e-08   0.00023       2      17 ..     211     226 ..     210     227 .. 0.92

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.6e-08
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                 +C+nCG+  H +++C 
  CCD25131.1 211 VCFNCGRSEHKSNECR 226
                 8**************7 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.3   3.2e-05      0.28      32      48 ..     210     226 ..     208     227 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.2e-05
   zf-CCHC_4  32 sfCyiCgvlGHsdkrCd 48 
                 ++C++Cg+  H+ ++C+
  CCD25131.1 210 IVCFNCGRSEHKSNECR 226
                 68**************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       692  (0.0385967); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2041.05
//
Query:       CCD25132.1  [L=154]
Description: hypothetical protein NDAI_0E03150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1123.27
//
Query:       CCD25133.1  [L=946]
Description: hypothetical protein NDAI_0E03160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.8e-08   32.2   0.0    2.2e-07   31.1   0.0    1.6  1  ApbA_C    Ketopantoate reductase PanE/ApbA C terminal


Domain annotation for each model (and alignments):
>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   1.2e-11   2.2e-07       1     124 [.     218     357 ..     218     358 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.2e-11
      ApbA_C   1 dirlarweKllinaainpltalldckn.gellespelralvrallkEalavaeaegvelseer...........leeaveavlek..........taan 77 
                 d+++ +w   +  +++ pl  +l+ +n  +l ++  ++ l+  l+ E l v++ ++++l+ e+                                ++ n
  CCD25133.1 218 DFLKQQWIMAIPKICFDPLLIMLEETNpTDLNNQILAKPLISGLVTETLTVMKNMNINLKSENleneddllkywN---------SlysptqtkkdDK-N 306
                 678899*********************88888888999******************9988886555555444330.........1333334333222.1 PP

      ApbA_C  78 ...rsSMlqD.veagrktEidyinGavvklAeklgvetPvnellyellkal 124
                     +S+l+  + +  +++id i+ +++ lA++++v+tP++e+ly++l +l
  CCD25133.1 307 emmMPSLLYHfIHKTAPLDIDLILLQIILLADDHQVKTPYLEFLYSILIQL 357
                 2359999998456666******************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4546  (0.253556); expected 358.6 (0.02)
Passed bias filter:                      614  (0.0342462); expected 358.6 (0.02)
Passed Vit filter:                       229  (0.0127726); expected 17.9 (0.001)
Passed Fwd filter:                        56  (0.00312343); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.68u 0.35s 00:00:02.02 Elapsed: 00:00:00.54
# Mc/sec: 5298.54
//
Query:       CCD25134.1  [L=323]
Description: hypothetical protein NDAI_0E03170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-75  253.1   0.0    3.4e-75  252.8   0.0    1.1  1  Pkinase        Protein kinase domain
    1.2e-37  129.6   0.0    1.7e-37  129.1   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
      0.002   17.1   0.0     0.0085   15.1   0.0    1.9  1  Haspin_kinase  Haspin like kinase domain
     0.0021   17.4   0.0     0.0037   16.6   0.0    1.6  1  Kinase-like    Kinase-like
  ------ inclusion threshold ------
      0.049   13.5   0.0       0.29   11.0   0.0    2.1  2  APH            Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.8   0.0   9.5e-79   3.4e-75       1     264 []       8     298 ..       8     298 .. 0.92

  Alignments for each domain:
  == domain 1  score: 252.8 bits;  conditional E-value: 9.5e-79
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH......HHS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle......rkg 93 
                 +++leklG+G++++Vyk+++k+tg  vA+K++k ++++ +  ++++rEi+++k+lkh+nivrly+v++++++l+lv+ey++++ l++++       + +
  CCD25134.1   8 FKQLEKLGNGTYATVYKGLNKSTGAFVALKEVKLDSEEGTP-STAIREISLMKELKHENIVRLYDVIHTENKLTLVFEYMDND-LKKYMDsqstgnTPR 104
                 6789*******************************998755.7**************************************88.888887665654444 PP

                 S--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHH CS
     Pkinase  94 slseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.ltsfvgtseYlAPEvl.keneyskkvDvWslGvilyel 190
                  l+ + +k + +q++egl+++H+++i+HrDlKp+N+Li++kg+lK++DFGla+ +    + ++s+v+t +Y+AP vl +++ y++++D+Ws+G+il+e+
  CCD25134.1 105 GLELNLVKYFQWQLFEGLAFCHENKILHRDLKPQNLLINKKGQLKLGDFGLARAFGIPVNtFSSEVVTLWYRAPDVLmGSRTYTTSIDIWSCGCILAEM 203
                 5777799************************************************999888****************99999***************** PP

                 HHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS...........................-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 191 ltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei...........................seeakdllkkllkkdpkkRltaeellqh 261
                 +tgk +f+g++++e       ql+ i++++g +++ ++p  s++                           +++++ ll+ ll+ +p  Rl+a+++l+h
  CCD25134.1 204 ITGKALFPGTNDDE-------QLKLIFETMGtPSEATWPGVSTLpkynpnfaqrlpkdlrmvlqpyckenlDDNVLGLLNGLLQLNPDLRLSAKQALHH 295
                 ********777776.......555566667767888999999999999999************************************************ PP

                 GGG CS
     Pkinase 262 pyl 264
                 p++
  CCD25134.1 296 PWF 298
                 **8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.0   4.8e-41   1.7e-37       3     221 ..      10     225 ..       8     237 .. 0.89

  Alignments for each domain:
  == domain 1  score: 129.1 bits;  conditional E-value: 4.8e-41
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT....C CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk....e 96 
                    +klG+G++++V++g  k    ++   Va+K +k +++e + +  ++e+++mk+lkh+niv+l+ v+  e++l +v+ey+++ dL+k++ ++    +
   CCD25134.1  10 QLEKLGNGTYATVYKGLNK----STGAFVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEYMDN-DLKKYMDSQstgnT 102
                  6799************999....8999******************************************************86.9******9977777 PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfGv 193
                   + l+l+ +  f +q+ +G+++ +++k++Hrdl  +N L++++ + k++DfGLar+       ++ +++ + + + ap +l+ ++ +t++ D+Ws G 
   CCD25134.1 103 PRGLELNLVKYFQWQLFEGLAFCHENKILHRDLKPQNLLINKKGQLKLGDFGLARAF--GIPVNTFSSEVVTLWYRAPDVLMGSRtYTTSIDIWSCGC 198
                  778899999999********************************************9..33344445556666667****99876599999******* PP

                  HHHHHHTTSSGTTTTSHHHHHHHHHHTT CS
  Pkinase_Tyr 194 llwEiftlgespypglkneevleklkeg 221
                  +l E++t g+  +pg ++ e l+ + e 
   CCD25134.1 199 ILAEMIT-GKALFPGTNDDEQLKLIFET 225
                  *******.********998888887554 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.4e-06    0.0085     109     257 ..      15     159 ..       3     187 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.4e-06
  Haspin_kinase 109 seklssevyqtke..kdkevvlKviplevledvtis..kelsl.kelkslklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLee 199
                    +++ +  vy+  +  +   v+lK + l+  e    +  +e+sl kelk  ++v+   + +    ++k++      y +++l  ++  +  G+    
     CCD25134.1  15 GNGTYATVYKGLNksTGAFVALKEVKLDSEEGTPSTaiREISLmKELKHENIVRLY-DVI--HTENKLTLVF--EYMDNDLKKYMDSQSTGNTPRG 105
                    55666666665553333456666666644433322222334434555555555543.322..2223333333..3455556666666666655544 PP

  Haspin_kinase 200 vklkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                    ++l+    ++   wq  + L+   ++ +  HRdL+ +n L++k+++  l d+ l+R+ 
     CCD25134.1 106 LELN---LVKYFQWQLFEGLAFCHEN-KILHRDLKPQNLLINKKGQLKLGDFGLARAF 159
                    4444...4445568888888776443.567**************************85 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0     1e-06    0.0037     152     284 ..     117     282 ..      57     286 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 1e-06
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.sevekgf...aPpEllgsrggytrknktkmthkldaWqlGlviyriwc 245
                  ql    a  +++ ++h +++++nll ++kg+l+lg+f+  +  g  v   s+  +++   aP  l+gs          ++t ++d W  G     +  
   CCD25134.1 117 QLFEGLAFCHENKILHRDLKPQNLLINKKGQLKLGDFGLARAFGIPVNTfSSEVVTLwyrAPDVLMGS---------RTYTTSIDIWSCGCILAEMIT 205
                  5555566778999************************9888889888776444444323345555555.........357889999999988777766 PP

  Kinase-like 246 lkl..Pltlateeakeew...................................kfklck.kipekvkaLlkkfLqls 284
                   k+  P t++ e+ k  +                                       ck +  ++v  Ll+++Lql+
   CCD25134.1 206 GKAlfPGTNDDEQLKLIFetmgtpseatwpgvstlpkynpnfaqrlpkdlrmvLQPYCKeNLDDNVLGLLNGLLQLN 282
                  44323777777777777777777777777777777777777777777777764444577777777777777777766 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.29     1e+03       3      72 ..      12      84 ..      10     123 .. 0.74
   2 ?   11.0   0.0     8e-05      0.29     168     187 ..     130     148 ..     116     158 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.29
                EEE--.SSCEEEEEEETT.--EE....EEEE-TTS-HHHHHHHHHHHHHHHHTT-.B--B-CTTBS-EEETTEEEE CS
         APH  3 relsggasnrtylvttpa.gryv....lrrnpparaaeeirrevallrlLakagv.pvPevlagdtddeeigllfa 72
                + l++g++  +y+   ++ g +v    +++ +++ ++ ++ re  l++ L   ++ +   +++    ++ + l+f+
  CCD25134.1 12 EKLGNGTYATVYKGLNKStGAFValkeVKLDSEEGTPSTAIREISLMKELKHENIvR---LYDVIHTENKLTLVFE 84
                567888888888888888788888888888888888888889999999999887733...4443334444444444 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 8e-05
                 EE-SS-SGGGEEEC..TTEE CS
         APH 168 llHgDlhpgNllvdpddgrv 187
                 +lH+Dl+p+Nll++  +g++
  CCD25134.1 130 ILHRDLKPQNLLIN-KKGQL 148
                 89************.66766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1278  (0.0712812); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2299.60
//
Query:       CCD25135.1  [L=608]
Description: hypothetical protein NDAI_0E03180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.6e-39  132.2   1.3    1.3e-37  128.6   1.3    2.3  1  AdoMet_MTase     Predicted AdoMet-dependent methyltransferase
    0.00078   19.3   0.2     0.0058   16.4   0.1    2.3  2  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
      0.088   12.8   0.4        5.7    6.9   0.0    2.7  2  Methyltransf_32  Methyltransferase domain


Domain annotation for each model (and alignments):
>> AdoMet_MTase  Predicted AdoMet-dependent methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   1.3   2.1e-41   1.3e-37       1     112 []     276     405 ..     276     405 .. 0.91

  Alignments for each domain:
  == domain 1  score: 128.6 bits;  conditional E-value: 2.1e-41
  AdoMet_MTase   1 lvnlekyndlykelkqkyakrlvenwvestdplkfvfedlaiaaylivlwkktrse..................eketsfvdvgcgngllvyvlaae 79 
                   +v++ k++d y  lk+ky+k lv+nw estdp+k+vfed+aiaa+li+lw + + +                  ++++ f d+gcgng+l y+l +e
    CCD25135.1 276 VVDKVKFQDRYILLKKKYSKFLVDNWAESTDPKKHVFEDIAIAAFLIELWIQLYPAssknktessdadddeysfKNKMQFRDLGCGNGVLCYILISE 372
                   68999*********************************************876544445566677898877777678899***************** PP

  AdoMet_MTase  80 gykgygidlrkrklwelypaevkvdliekvvvp 112
                   g kg gid+r+rk+w+++p+ev+  l+e+v++p
    CCD25135.1 373 GIKGIGIDARRRKSWSIFPQEVRNCLKEQVIIP 405
                   ******************************998 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.12     7e+02      70     118 ..     144     203 ..     129     259 .. 0.79
   2 !   16.4   0.1   9.8e-07    0.0058       3      36 ..     351     381 ..     349     385 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.12
  Methyltransf_31  70 ledekfDlilsnevl...........naladpdkileeiervlkpggilliedprllael 118
                      ++++  +lil +e++           ++++  + i+++ ++ +k+ + l+i +p+++ae 
       CCD25135.1 144 FKENDLNLILYKEFVrriiprnpskdALINQTCLIMNSSSEKFKNSTSLIIYTPHVEAED 203
                      566778888888888888888888888999999999999999999999999999955553 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 9.8e-07
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDi 36 
                      +++++ DlGCG+G l++ l +e   +++ +GiD 
       CCD25135.1 351 NKMQFRDLGCGNGVLCYILISE---GIKGIGIDA 381
                      678999**************77...678999995 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0   0.00095       5.7      25      62 ..     351     384 ..     338     390 .. 0.86
   2 ?    3.0   0.1     0.015        91     146     157 ..     487     498 ..     485     499 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.00095
  Methyltransf_32  25 galtvvDvGaGkgYLsfvlalkekeyklkvvgidakee 62 
                      ++++  D+G+G+g L  +l +   e ++k +gida+++
       CCD25135.1 351 NKMQFRDLGCGNGVLCYILIS---E-GIKGIGIDARRR 384
                      567788***************...5.999*****9976 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.015
  Methyltransf_32 146 vlvpCCyhelae 157
                      +++pCC h+l+ 
       CCD25135.1 487 MVIPCCSHNLSG 498
                      689******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.24s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4412.18
//
Query:       CCD25136.1  [L=761]
Description: hypothetical protein NDAI_0E03190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-17   62.6   1.3    5.2e-17   61.5   1.3    1.7  1  SUV3_C         Mitochondrial degradasome RNA helicase subunit
    1.3e-12   48.1   0.6    5.8e-12   45.9   0.0    2.4  2  Helicase_C     Helicase conserved C-terminal domain
     0.0026   17.6   0.0       0.01   15.6   0.0    2.0  2  DEAD           DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.069   13.5   0.4        0.6   10.5   0.1    2.6  2  RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain


Domain annotation for each model (and alignments):
>> SUV3_C  Mitochondrial degradasome RNA helicase subunit C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   1.3   1.2e-20   5.2e-17       1      47 [.     688     734 ..     688     735 .. 0.97

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 1.2e-20
                 -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH CS
      SUV3_C   1 LerLEslhkvldLYlWLSyRfpevFpdrelaeelkkeveekIeeaLe 47 
                 Ler+E+l+++++L+ WLS+R+p++F+d e+a++lk+ +e++I e+L 
  CCD25136.1 688 LERYEALYNIIMLFFWLSNRYPNYFVDLESATDLKHFCEMMIFEKLN 734
                 89*******************************************97 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.73   3.3e+03      21      63 ..     113     157 ..      98     164 .. 0.68
   2 !   45.9   0.0   1.3e-15   5.8e-12      15     110 ..     426     529 ..     415     530 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.73
                 EEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHH CS
  Helicase_C  21 ifvntidrlek.vklllekk..gikvavlhgelpqnereeileqfn 63 
                 +f n+ ++++k  + l ++   +    +++++l+q++ +++++q++
  CCD25136.1 113 VFHNKMKSFDKnESQL-KRLvwNKLRDYIYAQLQQKDLDKSISQYK 157
                 6777777776653333.22234444457888999999999998876 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 1.3e-15
                 TTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH........HHHHHHHT CS
  Helicase_C  15 eggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv........tsyiqriG 105
                 ++g++++   +++ l+    ++ k ++kvav++g+lp + r +  + fn+ge++vL+a+d++++G+++   + ++  dl++n         ++++q  G
  CCD25136.1 426 RKGDCIVAFSKKKILDLKLQIEAKTNLKVAVIYGSLPPETRVQQAQLFNEGECHVLVASDAIGMGLNLSIDRIIFTTDLKYNGkelmkltnSNIKQIGG 524
                 44555555555554442233445559******************************************87777778999977445667777******** PP

                 TSSST CS
  Helicase_C 106 RtgRa 110
                 R+gR+
  CCD25136.1 525 RAGRF 529
                 ****7 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.3e-06      0.01      20     143 ..     265     366 ..     252     379 .. 0.81
   2 ?   -3.0   0.0       1.1   5.1e+03      72     103 ..     448     483 ..     438     486 .. 0.65

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2.3e-06
                 EESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHHHHHHHHCTSSH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  20 aaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgrlddllstgkln 118
                  ++T sGKT      +lq++     kt     +  P+r La+++++++k+ +     r++ +++g++  ++l+ + n+++++ gt +++          
  CCD25136.1 265 LGPTNSGKTYK----ALQKL-----KTSESGYYAGPLRLLAREVYDTFKSQGI----RCN-LLTGEEIIKDLDSMGNSAKLTSGTVEMIPL-------- 341
                 47899999975....67776.....778889999**************99988....444.56778888888888799********99986........ PP

                 CTTEEEEEEETHHHHHHTTTHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 119 lsqvrflVlDEadrlldqgfsdfin 143
                  +++ ++VlDE++++ d++++  + 
  CCD25136.1 342 NKKFDVIVLDEIQMMNDEDRGWAWT 366
                 36799************98876655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.1
                 TTSTSEEEEEET..TSSHHHHHHHHHTT..CSEEEE CS
                 xxxxxxxxxxxx..xxxxxxxxxxxxxx..xxxxxx RF
        DEAD  72 kyidlrvlliig..gvaardqlskldng..vdivvg 103
                  +++l+v +i+g    ++r q+++l n+  ++++v+
  CCD25136.1 448 AKTNLKVAVIYGslPPETRVQQAQLFNEgeCHVLVA 483
                 346789999999443455566666633336998886 PP

>> RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00013       0.6      45      90 ..      78     178 ..      63     189 .. 0.65
   2 ?   -3.7   0.0       3.5   1.6e+04      85     101 ..     431     447 ..     411     459 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
                    SSTTCSEEEEEEEEESSECEEGGGCBES.........................................................SSSCEESSTTS CS
  RNA_pol_A_bac  45 egeeeksvelkLnvkgpgevtagdlkle.........................................................dadveivnpdi 83 
                    ++ e    ++++n k+ ++v+++dl+++                                                         ++ +++ np++
     CCD25136.1  78 DFIE--RFQFEINPKKYNNVYTKDLEFKknldmamnqvfhnkmksfdknesqlkrlvwnklrdyiyaqlqqkdldksisqykpilSQMIQPCNPEH 171
                    3333..3599*****************87776666666655555555555555555555555555555555555555555555555555555**** PP

                    EEEEEET CS
  RNA_pol_A_bac  84 lIakLrk 90 
                    lI++L+k
     CCD25136.1 172 LICQLAK 178
                    ****998 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.5
                    EEEEETT-EEEEEEEEE CS
  RNA_pol_A_bac  85 IakLrkgqeleleakvk 101
                    I+  +k++ l+l+++++
     CCD25136.1 431 IVAFSKKKILDLKLQIE 447
                    44444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 5632.82
//
Query:       CCD25137.1  [L=398]
Description: hypothetical protein NDAI_0E03200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-92  310.0   1.8    1.4e-92  309.8   1.8    1.1  1  Thiolase_N     Thiolase, N-terminal domain
    1.5e-46  157.1   2.5    2.1e-46  156.6   0.1    2.4  3  Thiolase_C     Thiolase, C-terminal domain
    2.8e-06   27.1   1.1    5.8e-06   26.1   1.1    1.5  1  ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain


Domain annotation for each model (and alignments):
>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.8   1.8   2.3e-96   1.4e-92       1     259 [.       5     266 ..       5     267 .. 0.97

  Alignments for each domain:
  == domain 1  score: 309.8 bits;  conditional E-value: 2.3e-96
                 EEEEEEEEE--EETTSTTTTS-HHHHHHHHHHHHHHHHT.S-GG.GCCEEEEEHSSCTTSTSCHHHHHHHHTTS-TTSEEEEEEHGGGHHHHHHHHHHH CS
  Thiolase_N   1 vvivsaartpigkfggslkdlsaeeLlaealkallekag.vdpe.evdevivGnvlqagegqniarqaalkagipeevpavtvnkvcsSglkavalaaq 97 
                 v+ivsa+rtpig+f+g l++ +a +L+a+a+ka++++++ ++pe + de+i+Gnvl+a+ gq++arq+al+ag+ ++++a+tvnkvc+S++ka++l+aq
  CCD25137.1   5 VYIVSAKRTPIGSFQGTLSSKTAIDLGATAVKAVMDEVPqLNPEsDYDEIIFGNVLSANLGQAPARQVALAAGLKNTIIATTVNKVCASAMKAIILGAQ 103
                 89*************************************9877659***************************************************** PP

                 HHHTTSHSEEEEEEEEESTTS-EEETCTTTTGGSSSSEEEEEHHHHHHTEETTTTSEHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHTTTTTTT CS
  Thiolase_N  98 siaageadvvvagGvEsmsnaptaestdvrsglklgdekakdllipdgladafneehmGltaenlakkykisReeqdefAvkshqkaaaaqkagkFkde 196
                 si++g+advvvagG+Esm+n+p++++ ++rsg+++g++ ++d + +dgl+da+++  mG++ae++a +++isReeqd+fA+ s+qka+aa ++gkFk+e
  CCD25137.1 104 SIKCGTADVVVAGGCESMTNTPYYMP-AARSGARFGETVLVDGVQRDGLNDAYDGLAMGVHAEKCASDWNISREEQDNFAIDSYQKAQAAENDGKFKNE 201
                 *************************9.99********************************************************************** PP

                 BE-EEEEESSSE.E.EE-S-TTS-TT--HHHHHTS-BSSSTT.SS-BTTSB--BEEEEEEEEEEEH CS
  Thiolase_N 197 ivPvkvkgkkgk.k.tvdkdeairsevtaekLaklkpaFkke.GtvtAgnasqisDGaaavllmse 259
                 i Pv +kg +gk +  v kde++ + ++++kL++ +++F+ke GtvtA nas+i+DG aav+l+se
  CCD25137.1 202 IAPVIIKGFRGKpDmEVVKDEEPGK-LNINKLKSARTVFQKEnGTVTAPNASPINDGGAAVILVSE 266
                 ************9636777887777.**************************************98 PP

>> Thiolase_C  Thiolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.24   1.4e+03      56      56 ..      99      99 ..      60     160 .. 0.56
   2 ?   -1.9   0.0      0.42   2.5e+03      17      63 ..     224     270 ..     218     271 .. 0.78
   3 !  156.6   0.1   3.5e-50   2.1e-46       1     123 []     274     397 ..     274     397 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.24
                H CS
  Thiolase_C 56 L 56
                +
  CCD25137.1 99 I 99
                2 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.42
                 GGGGGGHHHHHHHHHHHHHT--GGGESEEEE--SBHHHHHHHHHHHT CS
  Thiolase_C  17 peilglgPayaikkvlkkagltvedidlfEinEAFaaqaLavakald 63 
                 p +l++     ++ v +k+  tv   ++  in+  aa++L+++++l+
  CCD25137.1 224 PGKLNINKLKSARTVFQKENGTVTAPNASPINDGGAAVILVSERKLN 270
                 66677777777788888888888888888899999999999988875 PP

  == domain 3  score: 156.6 bits;  conditional E-value: 3.5e-50
                 ---SEEEEEEEEEE--GGGGGGHHHHHHHHHHHHHT--.GGGESEEEE--SBHHHHHHHHHHHT--GGGBSTT--HHHH-B-TTTHHHHHHHHHHHHHH CS
  Thiolase_C   1 lkplakirsyaevgvdpeilglgPayaikkvlkkaglt.vedidlfEinEAFaaqaLavakaldldlekvNvnGGaialGHPlGasGaRivvtllselk 98 
                 lkpla ir + e++++p++++++P  a++k+lk+ag++ +++id+fE+nEAF+++ La++k l+ld++kvNv+GGa+a+GHPlG+sGaRivvtlls l+
  CCD25137.1 274 LKPLAVIRGWGEAAHEPANFTWAPSLAVPKALKHAGIEdINSIDFFEFNEAFSVVGLANTKILKLDPSKVNVYGGAVAIGHPLGCSGARIVVTLLSILN 372
                 589**********************************889*********************************************************** PP

                 HCTTSEEEEEEEETTTEEEEEEEEE CS
  Thiolase_C  99 keggklgvaalCigggqgvalviek 123
                 +e+g+lgvaa+C+ggg ++++vie+
  CCD25137.1 373 QEKGRLGVAAICNGGGGASSIVIER 397
                 **********************986 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   1.1   9.8e-10   5.8e-06     149     208 ..      63     124 ..       6     136 .. 0.64

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 9.8e-10
                    HSTTHHHHHHHHHHT--SS..EEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SH CS
  ketoacyl-synt 149 vlanviagrisyalglrGp..svtvdtACsSslvavhaavqslrsgeadvalaGGvellltp 208
                     l +  a ++++a gl+    + tv   C+S+ +a+ +  qs++ g adv++aGG e +++ 
     CCD25137.1  63 NLGQAPARQVALAAGLKNTiiATTVNKVCASAMKAIILGAQSIKCGTADVVVAGGCESMTNT 124
                    3556666677777777665115678899**********99*****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2920.46
//
Query:       CCD25138.1  [L=414]
Description: hypothetical protein NDAI_0E03210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-47  162.3   5.4    6.5e-41  140.4   1.7    2.8  2  Pkinase      Protein kinase domain
    7.6e-23   81.1   0.3    1.4e-18   67.1   0.0    2.5  2  Pkinase_Tyr  Protein tyrosine kinase
    1.4e-05   24.6   0.1     0.0001   21.7   0.1    2.2  1  Kinase-like  Kinase-like
  ------ inclusion threshold ------
      0.015   15.3   0.2      0.027   14.5   0.2    1.3  1  Smg4_UPF3    Smg-4/UPF3 family
       0.06   13.2   1.9       0.16   11.8   1.9    1.8  1  DUF4183      Domain of unknown function (DUF4183)


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   2.1e-08   7.6e-05       4      74 ..      13      81 ..      10     104 .. 0.77
   2 !  140.4   1.7   1.8e-44   6.5e-41      45     260 ..     104     333 ..      83     335 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2.1e-08
                EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEE CS
     Pkinase  4 leklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdely 74
                 +++G+G+fG V+ a++  +++++A+K + k + +++++ ++  E k +kk+   +   +ly++f+e+++++
  CCD25138.1 13 RSQVGSGAFGLVFHAIDIVSQQEYAIKAVLKTSPNDSNN-STNDEKKQIKKSTiLQD--KLYHYFKEHQNRI 81
                579****************************99999885.89999888887763222..5777777766554 PP

  == domain 2  score: 140.4 bits;  conditional E-value: 1.8e-44
                 HHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH..HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE- CS
     Pkinase  45 vlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslsee..eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKit 140
                   +Ei+++ k++ h niv++ +++e++   ++v++y + + l++ + +++++s++   +kk++ q++++l+y+H+++i H+D+KpeNiL+d+ +++ ++
  CCD25138.1 104 HYKEINFHLKVHdHANIVTIHQILESQIATFIVMDYYPID-LFSSIVEHKHFSNDglLVKKVFLQLCSALNYCHQQNIYHCDIKPENILLDRFDNIHLC 201
                 579*****99999*************************98.666666788888886689********************************99****** PP

                 SGTTSEESSSSCSBCTTTSCGGGS-HHHH.................TT....SCB.SHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHH CS
     Pkinase 141 DFGlakelessskltsfvgtseYlAPEvl.................ke....ney.skkvDvWslGvilyelltgkppfsgekgkekvekeldqlekil 217
                 DFGla+  +     ++ vg+s+Y+APE +                 ++    +++ + + D+WslG+il++l++ ++p+ + ++ e   + ++++    
  CCD25138.1 202 DFGLATYSSYLA-PNTCVGSSYYMAPERVfcngngngnnndnngicNDqnvcSSFpTISGDIWSLGIILINLTCIRNPWLKAHQLE--DNTYHHF---- 293
                 ******999987.*******************9998887766655511444455568899*******************9444332..2223332.... PP

                 HHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 218 kilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellq 260
                     + +  l++   is+e+ +ll+++lk +p +Rlt+++l+q
  CCD25138.1 294 ---AKDNTILQKILPISNEFFQLLSNILKINPFERLTINSLIQ 333
                 ...2223344555678**********************99987 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   3.9e-05      0.14       2      50 ..      11      61 ..      10      79 .. 0.73
   2 !   67.1   0.0   3.9e-22   1.4e-18      50     258 ..     106     334 ..      90     335 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.9e-05
                 EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHH CS
  Pkinase_Tyr  2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelle 50
                  l +++G+GafG V+++    ++++  +k ++Kt  +++++++  +++ ++
   CCD25138.1 11 VLRSQVGSGAFGLVFHAIDIVSQQEYAIKAVLKTSPNDSNNSTndEKKQIK 61
                 67889*************998999999999999996655544311333333 PP

  == domain 2  score: 67.1 bits;  conditional E-value: 3.9e-22
                  HHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-S CS
  Pkinase_Tyr  50 eeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisD 146
                  +e+++  k+ +h niv ++ +  ++  ++iv++y +   +++ +++k + + +   + ++ lq++++++y +++++ H d+   N+Ll++ + + ++D
   CCD25138.1 106 KEINFHLKVhDHANIVTIHQILESQIATFIVMDYYPIDLFSSIVEHK-HFSNDGLLVKKVFLQLCSALNYCHQQNIYHCDIKPENILLDRFDNIHLCD 202
                  6777766777**************************98777777776.5555555566899************************************* PP

                  TTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE......................EEHHHHHHHHHHHHHHHHTTSSGTTTTS...HHHHHHHHHH CS
  Pkinase_Tyr 147 fGLardiekddeyvkkeeaklpvkWmapEslkekk......................ftsksDvWsfGvllwEiftlgespypgl...kneevleklk 219
                  fGLa       +y + +++  +  +mapE ++ +                        t + D+Ws G++l+ + +  ++p+ +    ++++  ++ k
   CCD25138.1 203 FGLATYS----SYLAPNTCVGSSYYMAPERVFCNGngngnnndnngicndqnvcssfPTISGDIWSLGIILINLTC-IRNPWLKAhqlEDNTYHHFAK 295
                  ****988....8999999***********999877789999************999778899************99.666754442214555666669 PP

                  TTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  Pkinase_Tyr 220 egkrlekpekcpeelyelmkkcweedpeeRptfselvek 258
                  +++ l+k   +++e+ +l+++ ++ +p eR t+++l+++
   CCD25138.1 296 DNTILQKILPISNEFFQLLSNILKINPFERLTINSLIQN 334
                  9999*****************************999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   2.9e-08    0.0001      14     284 ..      10     321 ..       3     325 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 2.9e-08
  Kinase-like  14 lvrgellkkgdrsvvfevkdqetgeplavkvfllps.easkk....dlerlkeqelairllrg.knpeqAkdhlrlllpfdlvkiqkkkpf.....iq 100
                  lv  + ++ g +++vf++ d   +++ a+k  l +s + s++    + +++k+ +++  +l     ++q + +l  +    + + ++++        +
   CCD25138.1  10 LVLRSQVGSGAFGLVFHAIDIVSQQEYAIKAVLKTSpNDSNNstndEKKQIKKSTILQDKLYHyFKEHQNRIYLPSVDLESIKNLTEQQLYciphyKE 107
                  66666677777777777777777777777766655533333201112344555555555544433333333333333333333444443321111123 PP

  Kinase-like 101 lkskesiywvvnallllpaasvdl..........eilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggf 188
                   + + ++   +n   + +  ++ +            l++ + +++ + +    + +    lql     + +++ + h +++++n+lld+   + l +f
   CCD25138.1 108 INFHLKVHDHANIVTIHQILESQIatfivmdyypIDLFSSIVEHKHFSNDGLLVKKVF--LQLCSALNYCHQQNIYHCDIKPENILLDRFDNIHLCDF 203
                  3333334444555555555555555555555554334455555555544433343444..69999********************************* PP

  Kinase-like 189 taLvragtkvvlseve...kgfaPpE..llgsrgg........ytrknktkm...thkldaWqlGlviyriwclklPltlateeakeew........k 262
                  + L ++  +    +++     +  pE  +++  g           +++++ +   t++ d W lG+    + c+  P  +a ++  + +        +
   CCD25138.1 204 G-LATYSSYLA-PNTCvgsSYYMAPErvFCNGNGNgnnndnngICNDQNVCSsfpTISGDIWSLGIILINLTCIRNPWLKAHQLEDNTYhhfakdntI 299
                  7.888888877.44443553344454333433332432223233444555552335666*********************999999999999999999 PP

  Kinase-like 263 fklckkipekvkaLlkkfLqls 284
                  ++++ +i+++   Ll ++L+ +
   CCD25138.1 300 LQKILPISNEFFQLLSNILKIN 321
                  99999*****999***999987 PP

>> Smg4_UPF3  Smg-4/UPF3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   7.5e-06     0.027      79     127 ..      31      79 ..      19      98 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 7.5e-06
   Smg4_UPF3  79 vDskgnespaivefApyqkvpkkkkkkkdakqgtIekDpeylaFlesle 127
                 v +++ + +a+++ +p    ++++ +kk+ k+ tI +D+ y  F e  +
  CCD25138.1  31 VSQQEYAIKAVLKTSPNDSNNSTNDEKKQIKKSTILQDKLYHYFKEHQN 79 
                 566667779**********998888*******************99877 PP

>> DUF4183  Domain of unknown function (DUF4183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.9   4.5e-05      0.16      12      59 ..     339     385 ..     321     394 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.5e-05
     DUF4183  12 tsFtdddgaaat.alpailtpnsyfnlYINGvLQesslytvtpgaltlk 59 
                 +sFt d  +  + +l+ i ++n+y+n  IN+v Q++++ +++ ++l+ +
  CCD25138.1 339 ASFTVDGPLSSVpQLIPIYDNNNYYN--INAVTQPNNNNSLSLNELIND 385
                 6899999988888*************..9************99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1048  (0.0584528); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 2935.48
//
Query:       CCD25139.1  [L=255]
Description: hypothetical protein NDAI_0E03220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-16   60.5   0.0    2.9e-16   59.9   0.0    1.3  1  RMI1_N    RecQ mediated genome instability protein
  ------ inclusion threshold ------
       0.14   11.8   0.0       0.36   10.5   0.0    1.7  1  Spo7_2_N  Sporulation protein family 7


Domain annotation for each model (and alignments):
>> RMI1_N  RecQ mediated genome instability protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   3.3e-20   2.9e-16      54     214 ..      41     221 ..      10     224 .. 0.80

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 3.3e-20
      RMI1_N  54 vlpaniaeqrksesspa........lkgpvvvQvldiedigsSaysqlealeavergeetrgrevirt...........................esaa 117
                  +p++ ++        a        ++++++ Q+l +e+i++S++ q+++++    + + ++++v r                            +   
  CCD25139.1  41 WFPNESTT--------AilekklckVNRELLFQILMVENISKSKLAQVDDIKV---KLDPKNQKVDRLrsgqlkapptykvvtqvdvdaddnidrT--- 125
                 45554322........0223345679************************999...6777888888888999***************999855441... PP

      RMI1_N 118 aasakadeenseekeeaqatsseskkrrmlkLeLtDg.gqkvkAiElkpikglslklaiGvKllLkggvkvrrGvlLLepenvkvlGGeveeldkawk 214
                 + ++ a+++n +++++++++s++s+ ++++kL+L+   g  ++Ai  +p++ +s    +G+K+++k+g+  ++Gv++ ++++v++lGG    ++++++
  CCD25139.1 126 GIDNIASTNNYNNNNNNNNNSNNSTTKAVFKLTLQSKnGDIFFAINSTPLPWISC--MLGSKIVIKPGTIFNKGVFIISDTKVVFLGGINRVWNENRD 221
                 33333333333444444445578899*************************9996..9******************************9999999876 PP

>> Spo7_2_N  Sporulation protein family 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     4e-05      0.36      26      53 ..     204     230 ..     200     242 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 4e-05
    Spo7_2_N  26 srvvlLGgIPelWlqeqrksiyksllkl 53 
                 ++vv+LGgI   W +++ +++   l + 
  CCD25139.1 204 TKVVFLGGINRVWNENRDHKMSAYL-EA 230
                 69***********777666665555.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1392  (0.0776396); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1944.00
//
Query:       CCD25140.1  [L=671]
Description: hypothetical protein NDAI_0E03230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-108  361.5   0.0   3.9e-108  361.1   0.0    1.1  1  MTHFR     Methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> MTHFR  Methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.1   0.0  2.2e-112  3.9e-108       8     286 ..      13     305 ..       5     306 .. 0.93

  Alignments for each domain:
  == domain 1  score: 361.1 bits;  conditional E-value: 2.2e-112
                 .SS-EEEEEE---SSHHHHHHHHHHHHHHGGGG-SEEEE---CCCTTHHHHHHHHHHHHHHH-S-EEEEEESTTS-HHHHHHHHHHHHHCT--EEEEE- CS
       MTHFR   8 egkalisfEffpPkteegernLleridrleevkplfvdvTwgaggstaeltssiakviqqelgleailhlTctdaskeeldkalekakelGirnilALr 106
                 ++++ is+EffpPkt +g+rnL+er+ r++++ plf++vTwgagg+t+++t+++a+ i +e+++++++hlTct+++++ +d+al+k++e+Gi+nilALr
  CCD25140.1  13 KATPSISLEFFPPKTDSGTRNLMERMGRMSAMDPLFITVTWGAGGTTSDKTLNLAQLISKEFNVPVCMHLTCTNMERSVIDEALKKCQEIGIKNILALR 111
                 67789********************************************************************************************** PP

                 -S--TT-GGC-...--S----SHHHHHHHHHHHHCGGSEEEEEE-TT--T......T-S-HHHHHHHHHHHHHCT--EEEEEE-S-HHHHHHHHHHHHH CS
       MTHFR 107 GDppkdedkwe...ekeeefkyaldLvrlireeygdlfdigvaaYPevhp......eaksleadlkylkeKvdaGAdfiitQlffdvdkflkfveqvre 196
                 GDpp +ed+++   ++e+efk+a dLvr+i+e yg +f+igvaaYPe+h         +++ +dl ylkeK+daGAdf+itQ+f+dv++fl f++ +r+
  CCD25140.1 112 GDPPIGEDWIDsdgNPEYEFKHAIDLVRYIKETYGSEFCIGVAAYPEGHYqedsenAIQDPVKDLVYLKEKIDAGADFVITQMFYDVERFLAFEQLFRD 210
                 *******974412246788*******************************5555444456999**********************************97 PP

                 CT-.SS-EEEEE---SSHHHHHHHHHHHT----HHHHCCCT.CHCT-HHHHHHHHHHHHHHHHHHHHHCT...--EEEEE-TT--HHHHHHHHHC CS
       MTHFR 197 agi.dipiipgimpiksykslkrlaklskvkiPqelldrle.eikdddeavkkigielavemvkkllaeg...vkglHlytlnkekaileileql 286
                  ++ +ip++pg+mpi+sy  ++r+ kls+++iP+++l+r+  ei+ dd+ vk+ig+e+ +++++++++++   v+ +H+ytln+ekai++i++q+
  CCD25140.1 211 NISmNIPLFPGLMPINSYLLFQRASKLSHASIPEKILERFPpEIQFDDDSVKSIGVEILIDIIEEIYKRTsgrVRCFHFYTLNLEKAIAQIVSQS 305
                 6544************************************978************************99888********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       529  (0.0295053); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4631.16
//
Query:       CCD25141.1  [L=1091]
Description: hypothetical protein NDAI_0E03240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-22   78.0   0.0    2.3e-21   76.6   0.0    1.8  1  ERCC4     ERCC4 domain
  ------ inclusion threshold ------
        0.1   12.7   0.2        6.5    6.9   0.0    2.7  2  HHH_2     Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> ERCC4  ERCC4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   2.5e-25   2.3e-21       1     154 [.     816     958 ..     816     960 .. 0.92

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 2.5e-25
                 EEGGGCTSHHHH..HHTTTSEEEEE--SSSSE.EE...CTT...............EEEEEEEHHHHHHHHCCSHHHHHHHHHHH.H-SEEEEEEES.- CS
       ERCC4   1 iDsrelksgieeylleelgvevvietlpigdyilwrrkvkaeynleldieepceekvlverksaddlvasikdgrleeqvsrlkrngykkpillveg.l 98 
                 +D+re++ ++++  l ++gv+v+++ l++gdy ++   +++               +++erks++dl+ s+++ rle q++++ + +yk p+ll+e  +
  CCD25141.1 816 VDTREFNASLPGL-LFRYGVRVIPCMLTVGDY-II---TPD---------------ICIERKSIEDLIGSLQNHRLELQCKKMLK-YYKYPTLLIEFdE 893
                 8************.9*****************.99...999...............*****************************.*********9998 PP

                 GGGTT........................THHH.HHHHHHHHHHHH.S-EEEEESSHHHHHHHHH CS
       ERCC4  99 dqykrknknsrnkqykakvrq........inrktiesaLvqlqldf.gvsilttesanetaewla 154
                  q++   + s+ + yk k ++        +++++i+s+L+ l ++f  ++i++++s+ +t++++ 
  CCD25141.1 894 GQSFSLEPFSEKRRYKLKESStihpisskLTQEEIQSKLAKLVMKFpTLKIIWSSSPLQTVNIIL 958
                 888888888888888877777888*877777778***************************9986 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.014   1.3e+02      18      31 ..     765     778 ..     762     783 .. 0.88
   2 ?    6.9   0.0   0.00073       6.5       5      59 ..    1004    1057 ..    1000    1060 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.014
       HHH_2  18 lLakrFksldaLkk 31 
                 +La++F++l+ L++
  CCD25141.1 765 NLAQHFETLEDLSH 778
                 69**********86 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00073
       HHH_2    5 aLGIrhVGektAklLakrFksldaLkkasleeLlevddiGeeiAqsivefFenek 59  
                   LGI+ + +    ++ ++Fk+ d L++  le++ +  d  ee A++ ++fF+ e+
  CCD25141.1 1004 ILGIPGISKVDYFNIRRHFKNYDVLSNLALEDIYNALD-DEELATKLYSFFQYEQ 1057
                  49999999999999*******************87655.4999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 7594.35
//
Query:       CCD25142.1  [L=1331]
Description: hypothetical protein NDAI_0E03250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-17   63.1   0.3      3e-17   63.1   0.3    3.6  3  ARID      ARID/BRIGHT DNA binding domain


Domain annotation for each model (and alignments):
>> ARID  ARID/BRIGHT DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   3.0         1   1.8e+04      45      47 ..     351     353 ..     275     401 .. 0.57
   2 !   63.1   0.3   1.7e-21     3e-17       2      90 .]     424     504 ..     423     504 .. 0.94
   3 ?   -0.5   0.4      0.12   2.1e+03      40      77 ..     508     545 ..     505     549 .. 0.54

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1
                 HHH CS
        ARID  45 frk 47 
                  ++
  CCD25142.1 351 LQQ 353
                 222 PP

  == domain 2  score: 63.1 bits;  conditional E-value: 1.7e-21
                 HHHHHHHHHHHHHHTTS.SSS----SSSS-STTHHHHHHTTTSSHHHHTT.CHHHHHHHHHTS-..-.......HHHHHHHHHHHHHHHH CS
        ARID   2 keeFlstLkqfhenrgt.lkkiPviggkevdlykLyraVikrGGfrkvtqknkWeevaqklglpredpeasesvaqalksiYeryLlpyE 90 
                 +e F+++L + +++r++ ++ iP i+gk+v+l+ Ly +V+++GG +++t++++W+ + +kl+l   d       aq+l+ iY++yLlpyE
  CCD25142.1 424 YELFMKSLLENCKRRNMpIQAIPEINGKRVNLFFLYLLVQRFGGGEQITRNQQWPAITSKLQLG--D-------AQQLELIYYKYLLPYE 504
                 689**************769******************************9**********994..3.......589************9 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.12
                 TTTSSHHHHTT..CHHHHHHHHH..TS-..-.......HHH CS
        ARID  40 ikrGGfrkvtqk.nkWeevaqkl..glpredpeasesvaqa 77 
                 i++GG+++ ++k    ++++q+l  ++  ++ +++++ +q 
  CCD25142.1 508 ISKGGMKETQAKrIFIQQFLQELlrKV--GQ-QQQQQQQQL 545
                 568999998765234567777773322..22.223333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4912  (0.27397); expected 358.6 (0.02)
Passed bias filter:                      712  (0.0397122); expected 358.6 (0.02)
Passed Vit filter:                       281  (0.0156729); expected 17.9 (0.001)
Passed Fwd filter:                        83  (0.00462937); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.12u 0.40s 00:00:02.52 Elapsed: 00:00:00.58
# Mc/sec: 6895.66
//
Query:       CCD25143.1  [L=317]
Description: hypothetical protein NDAI_0E03260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-34  118.6   1.0    2.9e-34  118.0   0.1    1.7  2  Torus         Torus domain
    9.4e-05   22.2   0.1    0.00024   20.9   0.1    1.7  1  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
  ------ inclusion threshold ------
      0.013   15.3   4.1      0.013   15.3   4.1    2.0  2  zf-CCCH_4     CCCH-type zinc finger
      0.024   14.3   0.0      0.048   13.3   0.0    1.5  1  PAP_RNA-bind  Poly(A) polymerase predicted RNA binding domain
       0.15   12.1   5.3        0.4   10.8   5.3    1.8  1  zf_CCCH_4     Zinc finger domain


Domain annotation for each model (and alignments):
>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.1   8.1e-38   2.9e-34       1     109 []       3     114 ..       3     114 .. 0.94
   2 ?   -2.3   0.1         2     7e+03      22      22 ..     256     256 ..     230     285 .. 0.48

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 8.1e-38
                 XXXX----S-SS--------SSS-----TTSS----S-THHHHS-----S----HHHH----HHHHSTT--B-HHHHHT--SSGGG-SSB-S---SS-- CS
       Torus   1 lkkrparkqvdeeelksekeeqegeeyNiWynkwsgeekekkkkskekaktrcnikkdsGytkadkekesyfClfFarGlCakGkkCeylHrlPteedl 99 
                 +k+r+a+ qv+e++l s+ + q+g ++N+Wynkws  + +++ +++ ++ +r++++ +sG t +dke++ +fCl+Fa+G+C+ GkkC+ylH++P+eed+
  CCD25143.1   3 WKNRSAKIQVKESDLPSSIPLQNGLTFNVWYNKWS--QGTSNGHDRFVNPYRLEPNVHSGRTLGDKEDNCFFCLYFAKGMCCLGKKCTYLHHIPDEEDY 99 
                 689********************************..6777789******************************************************7 PP

                 --TTB.....-TTS- CS
       Torus 100 kekkv.....DiFGR 109
                 ++ +      D+FGR
  CCD25143.1 100 RKLSLksdilDCFGR 114
                 7555557889****9 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2
                 S CS
       Torus  22 q 22 
                 +
  CCD25143.1 256 N 256
                 2 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   6.7e-08   0.00024       7      64 ..     152     204 ..     137     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 6.7e-08
                 TTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEE CS
       RRM_1   7 ppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkkl 64 
                  p+  e+ ++ +F+  G+i+si+ +      +k+++fV+++ + +Ae A+e + +++l
  CCD25143.1 152 KPSQIESRIRFVFGRLGDIESIRYIE-----AKNCGFVKYKYQCNAEFAKEVMSNQTL 204
                 555567788889**************.....6*******************9999876 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.6      0.51   1.8e+03      15      19 ..      68      72 ..      68      73 .. 0.92
   2 ?   15.3   4.1   3.5e-06     0.013       3      21 ..      73      91 ..      72      92 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.51
   zf-CCCH_4 15 dnCrF 19
                dnC+F
  CCD25143.1 68 DNCFF 72
                8***9 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 3.5e-06
   zf-CCCH_4  3 CpyfakGsCrfGdnCrFsH 21
                C yfakG+C  G +C+++H
  CCD25143.1 73 CLYFAKGMCCLGKKCTYLH 91
                78***************** PP

>> PAP_RNA-bind  Poly(A) polymerase predicted RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.3e-05     0.048      29      87 ..     156     235 ..     152     280 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.3e-05
  PAP_RNA-bind  29 VESkvRlLvqkLeavesialahpfnkgfervheckteeeleevqegslkslvkeekea.....................s 87 
                   +ES++R+ + +L ++esi+++ + n gf + ++  ++e ++ev + ++  l ++++                       +
    CCD25143.1 156 IESRIRFVFGRLGDIESIRYIEAKNCGFVKYKYQCNAEFAKEVMSNQTLLLPNDKEWDsrkegagllvkwanddpdpeaR 235
                   8***************************9888777777777776666554444443335666777777777777766542 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   5.3   0.00011       0.4       1      19 []      73      91 ..      73      91 .. 0.99

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00011
   zf_CCCH_4  1 CkfflqGtCkkGdkCrFaH 19
                C +f++G+C  G kC+++H
  CCD25143.1 73 CLYFAKGMCCLGKKCTYLH 91
                99***************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      600  (0.0334653); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2312.79
//
Query:       CCD25144.1  [L=553]
Description: hypothetical protein NDAI_0E03270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-88  296.1   1.2    3.3e-88  295.2   1.2    1.5  1  GLE1          GLE1-like protein
  ------ inclusion threshold ------
        2.2    8.8   5.9        3.6    8.1   5.9    1.4  1  SOBP          Sine oculis-binding protein
        3.8    7.0  34.6        6.2    6.3  34.6    1.5  1  DUF572        Family of unknown function (DUF572)
        9.7    6.0  52.6      0.094   12.6  26.2    2.6  2  eIF3_subunit  Translation initiation factor eIF3 subunit


Domain annotation for each model (and alignments):
>> GLE1  GLE1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.2   1.2   7.3e-92   3.3e-88       2     250 ..     274     514 ..     273     515 .. 0.95

  Alignments for each domain:
  == domain 1  score: 295.2 bits;  conditional E-value: 7.3e-92
        GLE1   2 kikqikknlleqvke.dkelkkllgdlkrkInpkvgQltnsseqlkkitkelkellesgkpvkvadkpelaykyllnflAkalvsqaetevsakpeaAf 99 
                 +i+ ikk+++e++k+ +kel+++++++krkInpk+gQltns++ql +i +el el++++k+      ++lay+++lnf+Aka+v+qaetev++kpe+A+
  CCD25144.1 274 RIAIIKKDIVEPMKNaNKELRNIISRHKRKINPKFGQLTNSNQQLISIQTELIELINETKS------DQLAYQWILNFIAKAIVHQAETEVRVKPESAI 366
                 67789***************************************************99999......8******************************* PP

        GLE1 100 plArvavgllsehpelgdlllArlvkkCpylvpfypakkegqsteeyrkrlGykrsddgkletedkyleRmsGiirlYaaiiqtels...ksskenphp 195
                 pl++++++ll+++pel  ll+Ar+vkkCpy+++f    +++++te++r+++G+kr++++k+e++++y+eRm+G+ +l+++i++++ls      ++ +hp
  CCD25144.1 367 PLGKLTLTLLVRFPELKTLLVARFVKKCPYVIGF----TCEIDTEKGRENMGWKRNSEQKWEDDTSYDERMAGMTTLFFVITRLPLSqdlI--TSFSHP 459
                 **********************************....**********************************************9995442..333444 PP

        GLE1 196 pgleiaWrwlarilnlpleplsnitatllaafLevagnrllkaYgkqfqKlleli 250
                  ++ ++W++lar++n+p ++l+n++++++ a++++a++++l+aY +q +Kll+li
  CCD25144.1 460 LPIIYSWQFLARMANTPIDLLTNTHFVVIGAWWDAAAAQFLQAYSNQSTKLLQLI 514
                 444445************************************************9 PP

>> SOBP  Sine oculis-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.9    0.0008       3.6      92     238 ..     165     307 ..     120     379 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0008
        SOBP  92 vspepsksaspsssptssnsskplisvassskllaeksqepaslveaplep.kkqrkkkpglrkpkqvkagsskssetkagllqkqqkalplsaelees 189
                 + ++ ++++++++ + ++++ k  ++ ++++++ ++k++e a+ + a++e+ + +r +++ +rk++++k+++++ ++ +a+ll++q+++   +++++ +
  CCD25144.1 165 ERRAREEEEARRKAA-EEEERKRRLQLEEEERIRKQKEEEEAKRKAAQEEEaRLKRIEEEAKRKEEENKQKKEAEAKAEAQLLEEQERKKIQQNKTDFK 262
                 333333555555555.45555555555555555555555555555544443133333455555555556566666777777777776666666666666 PP

        SOBP 190 svpkpflrpppsiqelqsslpnqslpkiapppkppstlappsngaerpp 238
                 s+ k f + +++i  +++ + +++ ++    +   +++ + +++  +p 
  CCD25144.1 263 SIEKTFWKYKERIAIIKKDIVEPMKNAN---K-ELRNIISRHKRKINPK 307
                 6777777666665554444444332211...1.2233333333333344 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  34.6    0.0014       6.2     135     288 ..     128     295 ..      44     339 .. 0.54

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0014
      DUF572 135 rtkdskkemealesLeeLqelnqrqakvdfdanlelrk.efreekkereeeeedeealkekislekikll...pedeedekkaklle.gkteslfasse 228
                 ++ ds+ ++ ++++L++++  ++++ +++ ++   +r+ + ree+++r ++ ++ee+ k +++le+ +++   +e+ee ++ka++ e  + ++++++++
  CCD25144.1 128 DSIDSRWKKLEIANLKQINTIKEEKRRIEEERLRLERErRAREEEEARRKA-AEEEERKRRLQLEEEERIrkqKEEEEAKRKAAQEEeARLKRIEEEAK 225
                 334556666666777777777777777777777666662344444444444.46666666887775555511044443333333333222233333333 PP

      DUF572 229 esaksakkkpt.kk.......esskekkkeslekklskltkkkad..........sslvvrKkkkeeekskeskekte 288
                 ++++++k+k++ +        e +++kk +++++ ++       +             +++K   e + ++++ke ++
  CCD25144.1 226 RKEEENKQKKEaEAkaeaqllEEQERKKIQQNKTDFK-------SiektfwkykeRIAIIKKDIVE-PMKNANKELRN 295
                 3332222222112111222333333333333333333.......1444445676444444444444.33333333222 PP

>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5  21.6      0.42   1.9e+03      25     111 ..     107     194 ..      88     195 .. 0.59
   2 ?   12.6  26.2   2.1e-05     0.094      42     181 ..     192     353 ..     189     361 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.42
  eIF3_subunit  25 ddEdededvkdswdaeeeeeeekekakkaaeakak.....aakakkkkskkqkiaeke.errkaeeeeaeeeeeleeedeaarkerlrkaeee 111
                   + E      +d+ d+ +e+ + k+ +   +++ +k      ++ +  k++k +i+e++ + ++++++++eee+  ++++e++rk+rl+ +eee
    CCD25144.1 107 ENEP-----LDEADDYNEKHVTKALQDSIDSRWKKleianLKQINTIKEEKRRIEEERlRLERERRAREEEEARRKAAEEEERKRRLQLEEEE 194
                   4444.....444444444444333333333333334555555667778888888888885555555566677777777777788888777776 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.1e-05
  eIF3_subunit  42 eeee.ekekakkaaeakakaakakkkkskkqkiaekeerrkaeeeeaeeeeeleeedeaarkerlrkaeeesDlknaadlFGgv............. 124
                   eee  +k+k+    e++ak ++a+++++  ++i+e+ +r+++e+++++e+e+++e++  +++er++ ++ + D+k+ + +F +              
    CCD25144.1 192 EEERiRKQKE----EEEAKRKAAQEEEARLKRIEEEAKRKEEENKQKKEAEAKAEAQLLEEQERKKIQQNKTDFKSIEKTFWKYkeriaiikkdive 284
                   2222133333....233446667888888888888887888888899999999999999***********************999***999999999 PP

  eIF3_subunit 125 ..........attketdlssldlf.np.ktkedFeelrkalaekltklekksphYssfleelirdlaks 181
                             +  + ++ +  ++f ++ +++++    +++l+e++++ ++++  Y+  l+ +++ ++ +
    CCD25144.1 285 pmknankelrNIISRHKRKINPKFgQLtNSNQQLISIQTELIELINETKSDQLAYQWILNFIAKAIVHQ 353
                   999999888855566666666777654256788999999999999999977779998888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3249  (0.181215); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                       253  (0.0141112); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.20u 0.32s 00:00:01.52 Elapsed: 00:00:00.49
# Mc/sec: 3366.68
//
Query:       CCD25145.1  [L=764]
Description: hypothetical protein NDAI_0E03280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-51  171.7  37.8    6.3e-28   97.6   6.0    2.8  3  Na_Ca_ex  Sodium/calcium exchanger protein


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   6.0   3.5e-32   6.3e-28       3     147 ..      41     208 ..      40     212 .. 0.87
   2 ?   -2.6   0.3      0.26   4.6e+03     104     115 ..     559     570 ..     494     579 .. 0.51
   3 !   84.8  17.9   3.2e-28   5.7e-24       2     146 ..     596     754 ..     595     759 .. 0.82

  Alignments for each domain:
  == domain 1  score: 97.6 bits;  conditional E-value: 3.5e-32
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH.HTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHH......... CS
    Na_Ca_ex   3 fvlfilslllisvladflvssaeeiak.slgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigs......... 91 
                 ++l+ +++ l  +++d+l++s+++++k +l is++v+G+tllAlgn +p+++s+++++ +g ++la g+++G+++f +++viGl+++ g          
  CCD25145.1  41 IILISYFITLALITTDCLTPSLSYVSKeILYISDRVSGMTLLALGNAIPDITSTYQSMNSGVPSLAFGELIGGIFFLVTVVIGLMGITGDihlmpknig 139
                 5788999*******************669***********************************************************88887766554 PP

                 ..BTTSSCE...................CCHHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  92 ..lkvdses...................lkldlgllllvallllllvlllllplfvpgrltvleglvllllYalylv 147
                   +     +                   +++d+ +  ++++ ++++++ ++l +   g+l+++e++++++lY+ y++
  CCD25145.1 140 nqE-----NdievgqevdscwendstlvYERDMYIQDTLTFSIMIFLSGIFLSN---GELKLWECVLMVMLYCGYIC 208
                 440.....1555566667777888888999999888888888888777777666...******************97 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHH CS
    Na_Ca_ex 104 gllllvalllll 115
                  +l+ ++++l++
  CCD25145.1 559 KILIPMSVILFG 570
                 222233333333 PP

  == domain 3  score: 84.8 bits;  conditional E-value: 3.2e-28
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHBTTSSCE.. CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigslkvdses.. 98 
                 ++++fils+l+is++  ++v+ + ++ +++ is+++lGlt++A+gns+++l+s+i++++ g vd+a+g+++Gs ++ +l+++G+ +++ ++k++ +   
  CCD25145.1 596 SILGFILSILMISFIVRRVVELLIKWMETFQISETILGLTIFAWGNSVGDLVSNITFIKIGVVDIALGACFGSPLLYFLFGVGIDGILIMIKKQDKVgd 694
                 689*********************************************************************************999999544444456 PP

                 ............CCHHH.HHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  99 ............lkldl.gllllvallllllvlllllplfvpgrltvleglvllllYalyl 146
                             +++d+  +l+ v +l++++v++ +++    +++++ +g vlll+Y++++
  CCD25145.1 695 eimrnfwmnsilFEVDFnLILSCVGILISFFVFI-VIVPLNHWKIDKSVGCVLLLIYFMVM 754
                 6677777777668888833444444444444444.4333349***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1049  (0.0585086); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5239.76
//
Query:       CCD25146.1  [L=338]
Description: hypothetical protein NDAI_0E03290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.4e-73  244.6   0.0    7.9e-73  244.3   0.0    1.1  1  Porphobil_deam   Porphobilinogen deaminase, dipyromethane cof
    9.8e-21   73.9   0.3    1.8e-20   73.0   0.3    1.5  1  Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain


Domain annotation for each model (and alignments):
>> Porphobil_deam  Porphobilinogen deaminase, dipyromethane cofactor binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   0.0   8.8e-77   7.9e-73       1     202 [.      16     231 ..      16     233 .. 0.93

  Alignments for each domain:
  == domain 1  score: 244.3 bits;  conditional E-value: 8.8e-77
  Porphobil_deam   1 irigtRkSkLAlaqaelvaeaLke...eeeveivtiktkGDkildkpLakiggkglFtkeleeaLle....geidlaVhSlKDlptelpeglela 88 
                     i+ig R+SkLA+aq+e++++ + +   ++e+ i + +t GD+i+ kpL ++ggk+l+tkele++L++    +++dl+VhSlKD+pt lp+g++l+
      CCD25146.1  16 IKIGGRRSKLAVAQSETIQKLILSkfpDAECPIFSTQTLGDQIQFKPLFSFGGKALWTKELEDKLYHddpqERLDLIVHSLKDMPTLLPDGFQLG 110
                     89******************99554556679**********************************97566589********************** PP

  Porphobil_deam  89 avlkredprDvlvv......kssleelpegavvgTsSlRRkaqlkklrpdlevkdlRGnvdtRlrkldeg..eydaiiLAaAGLkRlgleerise 175
                     ++++r dp+D+lv+      + sl++lp+ga+vgTsS+RR+aqlk+++p+l +k++RGn++tRl+kld+   e+++iiLAaAGL R+gl++ri++
      CCD25146.1 111 CITERSDPQDCLVMplgspyN-SLNDLPDGAIVGTSSVRRSAQLKRKFPTLVYKSIRGNIHTRLDKLDDPqnEFQCIILAAAGLIRMGLSHRITQ 204
                     *************98876643.7********************************************876557********************88 PP

  Porphobil_deam 176 vlspeellpavgQGalavevrkedeel 202
                      +++e++++avgQGal++e+rk+d+++
      CCD25146.1 205 KFDSETMYHAVGQGALGIEIRKNDDRM 231
                     8**********************9986 PP

>> Porphobil_deamC  Porphobilinogen deaminase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.3   2.1e-24   1.8e-20       2      74 ..     245     320 ..     244     321 .. 0.91

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 2.1e-24
                      HHHHHHHHHHHHTT--TTSSEEEEEEEE.TTE.EEEEEEEE-TTS..S-EEEEEEEE..-GGGHHHHHHHHHHHHH CS
  Porphobil_deamC   2 levlaERallkeLeGGCsvPiGvyaeve.aneelkLkglvlsldglksaveeaeakg..eleeaeelGkklaeell 74 
                       ++laER+l+++LeGGCsvPiGv ++++ + + l Lkg+v++ +g+ ++++  ++ +   + +  e+Gk lae+++
       CCD25146.1 245 VCCLAERSLMRTLEGGCSVPIGVESNYDkDSKLLILKGIVIDVEGKTAVEDSHQMVIndVERDTIECGKILAEKMI 320
                      6***************************5555899************99999999998755899**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2552.43
//
Query:       CCD25147.1  [L=315]
Description: hypothetical protein NDAI_0E03300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-24   86.0  10.3    3.6e-24   85.5  10.3    1.2  1  Reticulon  Reticulon
    0.00019   20.9   3.4    0.00026   20.5   3.4    1.2  1  DUF639     Plant protein of unknown function (DUF639)
  ------ inclusion threshold ------
       0.14   11.1   0.1       0.29   10.0   0.0    1.5  2  TDA11      Topoisomerase I damage affected protein 11


Domain annotation for each model (and alignments):
>> Reticulon  Reticulon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5  10.3     6e-28   3.6e-24       2     156 ..      38     207 ..      37     208 .. 0.90

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 6e-28
   Reticulon   2 adlllWrnkkksgivlgglllllllfellgysllslvsklllllllvlflwaeyagllnkskp.................pepelelseesvreladsl 83 
                  +l++W+n+k++++v+ ++l++l++f+l+  ++++l +++++ +l+++ l ae++++l++ +                   +++l+   ++++++++ +
  CCD25147.1  38 QNLVYWKNPKNTLKVFSSILFSLIIFKLF--NFFTLSLRVIYSILFISSL-AEFITKLTL-GRglvtsisplreikskneAVSTLHSENSKLEKYFKFI 132
                 589**************************..*******************.999999999.444677776666555554444***************** PP

   Reticulon  84 lel..lnkalselrrlalgedlklflkvalllyilsilgslfslltllyigvvlaftvPllYekyedeIdalvek 156
                  ++  l + +  + ++++++++ +++ +al++yil+++ +l+s++ +++i+v ++ftvP++++k + eId+ +ek
  CCD25147.1 133 WDSniLPECQLYMTSIIFAKSPRKTFAFALSFYILHKIAKLVSIWWCIFISVWSIFTVPFIFSKFQREIDQTIEK 207
                 7643389****************************************************************9987 PP

>> DUF639  Plant protein of unknown function (DUF639)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   3.4   4.4e-08   0.00026      50     198 ..      33     192 ..      28     224 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 4.4e-08
      DUF639  50 tltlfeevvyWeePsktvvfl..altiliiyrellqyvlavalifvaikmvl.....aRqkgsrekledavkvsa.epdsntiekivavqdglseLeql 140
                     ++++vyW +P++t+ +   +l +lii++ +    l++ +i+++ ++       ++    r+ +  +  +++ +++++ +  + + +  l++  ++
  CCD25147.1  33 SPHIIQNLVYWKNPKNTLKVFssILFSLIIFKLFNFFTLSLRVIYSILFISSlaefiTKLTLGRGLVTSISPLREiKSKNEAVSTLHSENSKLEKYFKF 131
                 55689***********98664237899*******************99998843333222222222333333444134445566666667778888888 PP

      DUF639 141 lqkvnvv...lLklRalllskapqaaskvalamlvlatvlavvPfkyllafvlvelftres 198
                 + + n+     L + +++++k p+++  +al + +l  +  +v   + + + +  +ft   
  CCD25147.1 132 IWDSNILpecQLYMTSIIFAKSPRKTFAFALSFYILHKIAKLVSIWWCIFISVWSIFTVPF 192
                 99****644379*************************999999999999999999999754 PP

>> TDA11  Topoisomerase I damage affected protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.46   2.7e+03      57      78 ..     101     122 ..      93     127 .. 0.61
   2 ?   10.0   0.0   4.9e-05      0.29     331     381 ..     192     240 ..     182     258 .. 0.70

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.46
       TDA11  57 svsglrlesrrsssassvgsta 78 
                 s+s+lr  + +  + s+++s  
  CCD25147.1 101 SISPLREIKSKNEAVSTLHSEN 122
                 5566666666666666666644 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 4.9e-05
       TDA11 331 alftrldkiiqqevekslnWeds.gePevsefapiteePtqyydqnssssvr 381
                  +f+++ + i q +ek ln+ +s g+  v e     e P  y ++  ++ + 
  CCD25147.1 192 FIFSKFQREIDQTIEKGLNYTKSkGKAIVGETQ---EIPRTYMEKVDNKLNE 240
                 489********************7777777776...7777777666555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       940  (0.052429); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.20s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2569.14
//
Query:       CCD25148.1  [L=574]
Description: hypothetical protein NDAI_0E03310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-21   76.1  18.6    4.3e-07   30.4   0.0    7.5  7  Sel1      Sel1 repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.5   0.00035       6.2      19      38 .]     306     325 ..     279     325 .. 0.83
   2 !    5.1   0.0    0.0023        41       1      30 [.     326     359 ..     326     363 .. 0.67
   3 !   30.4   0.0   2.4e-11   4.3e-07       2      34 ..     370     405 ..     369     407 .. 0.86
   4 ?    0.9   0.0     0.047   8.5e+02       1      14 [.     407     418 ..     407     424 .. 0.80
   5 !    6.6   0.1   0.00074        13      19      32 ..     443     456 ..     435     459 .. 0.86
   6 !   21.4   0.1   1.6e-08   0.00029       2      35 ..     470     502 ..     469     504 .. 0.92
   7 !   10.8   0.1   3.4e-05      0.61       1      37 [.     509     545 ..     509     546 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.00035
        Sel1  19 vpkDpekAiewyekAAeqGd 38 
                 + k+  kA+ +y kA ++++
  CCD25148.1 306 ITKNDAKALDYYIKASNLNH 325
                 678*************9997 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0023
        Sel1   1 aeAmyrLGmfylylnGl...g.vpkDpekAiewy 30 
                 aeA yr +  y +++G+   + ++   ++ +++y
  CCD25148.1 326 AEATYRTAICYEFQKGTpndMlIEESLDLSFKYY 359
                 79******66666666555423444577777777 PP

  == domain 3  score: 30.4 bits;  conditional E-value: 2.4e-11
        Sel1   2 eAmyrLGmfylylnGl....g.vpkDpekAiewyekAA 34 
                 ++ y+LG  ++yl+Gl      vp D++kAi+w+ekA 
  CCD25148.1 370 SCKYKLG--LAYLYGLnnnvLvVPLDINKAIYWFEKAS 405
                 567****..888*****99854777************7 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.047
        Sel1   1 aeAmyrLGmfylyl 14 
                 + ++y LG   +y+
  CCD25148.1 407 SQSCYELG--KIYE 418
                 579*****..7666 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.00074
        Sel1  19 vpkDpekAiewyek 32 
                 + +D++kA+++y k
  CCD25148.1 443 IRQDYKKALYYYSK 456
                 567*********98 PP

  == domain 6  score: 21.4 bits;  conditional E-value: 1.6e-08
        Sel1   2 eAmyrLGmfylylnGlg.vpkDpekAiewyekAAe 35 
                  A+++LG   +y++G      D +k i wy kAA 
  CCD25148.1 470 LAQWKLG--HCYEFGELnCSIDSKKSIAWYYKAAT 502
                 7******..*******77999*************7 PP

  == domain 7  score: 10.8 bits;  conditional E-value: 3.4e-05
        Sel1   1 aeAmyrLGmfylylnGl.g.vpkDpekAiewyekAAeqG 37 
                 + Am +L+ +y  l+G  g + ++ ++ + w  k+ +++
  CCD25148.1 509 SMAMIALAGWY--LTGAeGvLLPNFNESFNWIYKSYQLN 545
                 579*****666..*****98999********99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1073  (0.0598472); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4318.93
//
Query:       CCD25149.1  [L=275]
Description: hypothetical protein NDAI_0E03320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-07   29.2   0.0    1.8e-06   28.0   0.0    1.6  1  Ribosomal_L10  Ribosomal protein L10


Domain annotation for each model (and alignments):
>> Ribosomal_L10  Ribosomal protein L10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0     1e-10   1.8e-06       5      92 ..      80     184 ..      77     194 .. 0.81

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 1e-10
                    CHCCCCCCCCCCCTTSSEEEEEE-TTS-HHHHHHCCCHHHHHGCEEEEESCCCCCCCCHCCTSS.........S........SCGCCSSSEEEEEE CS
  Ribosomal_L10   5 kKeelvkelkellkkyksvvvvdyegltvaqlqelRkklrengaelkvvKntlmrrAleetgee........ek........lkellkgpvalvft 84 
                    +K+ l++  k l+++ +++++ +y++l  ++ + +R++++++g++l  ++n+l++  l++++ e        +k        l + +kgp+a +  
     CCD25149.1  80 RKTFLIDYYKHLMESNSVILFLHYNNLLKQEDHFFRAQVKQTGGTLTKIRNRLFQVYLKNSKREdpcaplngDKcqlltnhpLLPIFKGPTAAITF 175
                    78888999999**************************************************99955555555005666666799********9999 PP

                    SS-.TCHHH CS
  Ribosomal_L10  85 ned.pvala 92 
                    +e+ pv + 
     CCD25149.1 176 KESiPVNIL 184
                    765134444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2030.27
//
Query:       CCD25150.1  [L=293]
Description: hypothetical protein NDAI_0E03330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-59  200.4   0.1    2.1e-59  199.9   0.1    1.2  1  Methyltransf_4   Putative methyltransferase
    0.00061   20.4   0.0     0.0015   19.2   0.0    1.7  1  Methyltransf_25  Methyltransferase domain
     0.0021   18.8   0.0     0.0064   17.2   0.0    1.8  2  Methyltransf_12  Methyltransferase domain
     0.0071   16.1   0.0      0.012   15.4   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
       0.02   14.1   0.0      0.033   13.4   0.0    1.2  1  DUF844           Baculovirus protein of unknown function (DUF
      0.095   12.0   0.0       0.17   11.2   0.0    1.4  1  Ubie_methyltran  ubiE/COQ5 methyltransferase family
       0.11   12.0   0.0       0.24   10.9   0.0    1.6  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.9   0.1   8.3e-63   2.1e-59       2     171 ..     101     279 ..     100     281 .. 0.98

  Alignments for each domain:
  == domain 1  score: 199.9 bits;  conditional E-value: 8.3e-63
                     -EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHC........TTSSEEEEES-CCCHHHHCS-TTSEEEEEEES-----SGG CS
  Methyltransf_4   2 apvvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkieal........elkNlrilrgdalkvllelledgslekifilFPDPwfKkr 88 
                     ++++++iGcG G++l++l++k+P+ ++lG+Eirv+v+++v ++i al        +++N+++lrg+a+k+l++++e+g+l+k+f++FPDP+fK+r
      CCD25150.1 101 KVTIADIGCGFGGLLIDLSPKFPQDLILGMEIRVQVTNYVEDRIIALrnnnvtkqGYQNINVLRGNAMKFLPNFFEKGQLNKMFFCFPDPHFKQR 195
                     6889*****************************************9999********************************************** PP

                     GGGGSTTSHHHHHHHHHHEEEE.EEEEEEESHHHHHHHHHHHHHCSTTEEESSCCCSCCTCHCHHCCCSSTTCCCCCCTTSS-E CS
  Methyltransf_4  89 hhKrRllqpellkelarvLkkg.GvlelaTDveeyaeemlkvleeeplferlskeeeleeeplsvlriatkyeqkvqskgkeiy 171
                     +hK R+++ +ll+e+a+vLk+g Gv++++TDve+++ +m+k+le++plferl++e+e+++e+++++r+at++++kv++k++++y
      CCD25150.1 196 KHKARIVTTTLLSEYAYVLKEGeGVVYTITDVEDLHLWMVKHLEAHPLFERLDEEWEKNDECVQIMRNATEEGKKVERKKGAKY 279
                     ********************977********************************************************99887 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.8e-07    0.0015       1      95 [.     104     216 ..     104     217 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.8e-07
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHH........HHHHHTTT.TEEEEESBCCG.BS..SSTTTEEEEEEEST.GGGSSHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaar........eraeeegl.nvefvqgdaed.lp..fedgsfDlvvssga.lhhlsded 81 
                      + d+GcG G l+++l+ ++++  ++g++i  +  ++++        +++ ++g+ n+++++g+a + lp  fe+g+ + ++ ++   h+ ++++
       CCD25150.1 104 IADIGCGFGGLLIDLSPKFPQDLILGMEIRVQVTNYVEdriialrnNNVTKQGYqNINVLRGNAMKfLPnfFEKGQLNKMFFCFPdPHFKQRKH 197
                      78*****************878888888877777666633333323444446669*********885667779999988888777444433332 PP

                      HHH.....HHHHHHHHEEE CS
  Methyltransf_25  82 lek.....alkeiarvLkp 95 
                       ++     +l+e a vLk+
       CCD25150.1 198 KARivtttLLSEYAYVLKE 216
                      2222222266666666665 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   2.5e-06    0.0064       2      59 ..     106     163 ..     105     170 .. 0.94
   2 ?   -2.7   0.0       3.9     1e+04      13      30 ..     212     229 ..     208     255 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 2.5e-06
  Methyltransf_12   2 eiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdll 59 
                      +iGcG G ll  l +k+p+  ++g++i  ++ +  + ++ + +nnn+++  ++++++l
       CCD25150.1 106 DIGCGFGGLLIDLSPKFPQDLILGMEIRVQVTNYVEDRIIALRNNNVTKQGYQNINVL 163
                      9*********************************************999999998876 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.9
  Methyltransf_12  13 alleklpdieytgvDisp 30 
                      ++l++ +++ yt +D+  
       CCD25150.1 212 YVLKEGEGVVYTITDVED 229
                      677777888888888865 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.7e-06     0.012       3      80 ..     100     185 ..      98     276 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 4.7e-06
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielAre........naqklgldnveFeqgdiee.leklledekfDlils 80 
                      +++++ D+GCG G l++ l    +p+  + G +i  ++ ++ +         n  k+g++n+++ +g++ + l++ +e+ + + ++ 
       CCD25150.1 100 NKVTIADIGCGFGGLLIDLSP-KFPQDLILGMEIRVQVTNYVEDriialrnnNVTKQGYQNINVLRGNAMKfLPNFFEKGQLNKMFF 185
                      67899***************6.355555666666555443333333333334*******************9995588888887765 PP

>> DUF844  Baculovirus protein of unknown function (DUF844)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.3e-05     0.033     130     180 ..     212     263 ..     196     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
      DUF844 130 yvlasvssteykvkdvvklylyllriekykslyklleetl.ddrtcvPiist 180
                 yvl   +   y++ dv  l l++++    ++l++ l+e   ++ +cv i+ +
  CCD25150.1 212 YVLKEGEGVVYTITDVEDLHLWMVKHLEAHPLFERLDEEWeKNDECVQIMRN 263
                 888889999*************************99999989999**99965 PP

>> Ubie_methyltran  ubiE/COQ5 methyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.8e-05      0.17      48     110 ..     101     170 ..      83     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.8e-05
                      TTEEEEES-TT-HHHHHHHHHHHHHH......EEEEEES-H.HHHHHHHHHHHHHTSSTEEEEE--TTT- CS
  Ubie_methyltran  48 gakvlDvagGtgDlafklsdsvgekg......kvvvlDine.nmLkvgekklkeegkinieflqanaeeL 110
                        ++ D+ +G g l ++ls +  +        +v+v ++ e  ++   ++ + ++g++ni+ l +na+++
       CCD25150.1 101 KVTIADIGCGFGGLLIDLSPKFPQDLilgmeiRVQVTNYVEdRIIALRNNNVTKQGYQNINVLRGNAMKF 170
                      23789*************99988877788877898888655168899999******************84 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   9.4e-05      0.24      32      72 ..     101     141 ..      93     241 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.4e-05
                 CSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHH CS
         MTS  32 sgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesak 72 
                 + +++D+GcG+G l + l  + p+  +  +++  +  +  +
  CCD25150.1 101 KVTIADIGCGFGGLLIDLSPKFPQDLILGMEIRVQVTNYVE 141
                 4569***************9999977777776655544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2133.87
//
Query:       CCD25151.1  [L=188]
Description: hypothetical protein NDAI_0E03340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.1e-28   96.6   0.0      1e-27   96.1   0.0    1.2  1  DNA_binding_1    6-O-methylguanine DNA methyltransferase, DNA
  ------ inclusion threshold ------
      0.042   14.7   0.1      0.065   14.0   0.1    1.3  1  Methyltransf_1N  6-O-methylguanine DNA methyltransferase, rib


Domain annotation for each model (and alignments):
>> DNA_binding_1  6-O-methylguanine DNA methyltransferase, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.1   0.0   1.1e-31     1e-27       3      79 ..     106     182 ..     104     184 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.1 bits;  conditional E-value: 1.1e-31
                    HHHHHHHHTTS-TT-BEEHHHHHHHTT.TSCHHHHHHHHHTSSBTTTSGGGGEEBTTSBCCTTTTCHHHHHHHHHHT CS
  DNA_binding_1   3 qqrVwellrqIpyGkvttYgeiAkllgkpkaaraVgqalaanplailvPcHRVvgadgklggyagglerkralLeaE 79 
                    q+++w+ +r+I +G +++YgeiAk+++kpka+raVg+ ++ n++a++vPcHRV+g++gkl+gy++++  k++lL++E
     CCD25151.1 106 QRQIWDEMRKIKPGMTISYGEIAKKINKPKASRAVGRGCGFNKIALIVPCHRVIGSSGKLTGYRWSIVLKKRLLAKE 182
                    99**************************************************************************9 PP

>> Methyltransf_1N  6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   7.2e-06     0.065       1      46 [.       3      57 ..       3      73 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.2e-06
                     --EEEEEEETTEEEEEEEETTC.EEEEEEEC-HHH........CCHHHCCCTTTS CS
  Methyltransf_1N  1 alyytlidsplgrlllagdEkg.llaidlldkdts........elkelpkllkqd 46
                     +l+yt+ ++ l+++l++++E++  l+ ++l++++         +   l+k++k++
       CCD25151.1  3 KLLYTFVETALTNALIIFREQSqKLVYASLGSQKDvllkiaeqDFETLSKITKVK 57
                     589******************9977777777777645544444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1394.13
//
Query:       CCD25152.1  [L=169]
Description: hypothetical protein NDAI_0E03350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1307.67
//
Query:       CCD25153.1  [L=88]
Description: hypothetical protein NDAI_0E03360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-18   63.9   0.1    9.1e-18   63.7   0.1    1.1  1  LSM          LSM domain
  ------ inclusion threshold ------
      0.042   13.7   0.0      0.067   13.1   0.0    1.5  1  BPL_C        Biotin protein ligase C terminal domain
       0.18   10.7   0.3       0.21   10.4   0.3    1.0  1  Rhabdo_ncap  Rhabdovirus nucleocapsid protein


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.1   1.5e-21   9.1e-18       2      67 .]      12      82 ..      11      82 .. 0.95

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.5e-21
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTET.....EEEEEEEEEEEGGGEEEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkk.....ekrklglvliRGnnivlisl 67
                 ++k in+ v+++l++ re+ GtL+gfD+f+N+++ed++e++ +++       ++ g++l+ Gn+i+++++
  CCD25153.1 12 VIDKTINQPVWIILQSQREFTGTLIGFDDFVNVIIEDAVEWVLNEEgedemIMTHHGRMLLSGNTIAMLVP 82
                5789**************************************99999999999999************986 PP

>> BPL_C  Biotin protein ligase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.1e-05     0.067       1      31 [.      16      47 ..      16      65 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
                STTSEEEEEE.TSCEEEEEEEEE-TTSEEEEE CS
       BPL_C  1 hsGqeVtled.edgkveGiavGIdddGaLllk 31
                +++q+V++++  +++++G+  G dd+ + +++
  CCD25153.1 16 TINQPVWIILqSQREFTGTLIGFDDFVNVIIE 47
                69*********************998655555 PP

>> Rhabdo_ncap  Rhabdovirus nucleocapsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   3.5e-05      0.21     223     261 ..      35      78 ..      30      81 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.5e-05
                  HHHHHHHHT--HHHHHHT--SHHHHHHHH.....HHT-SSS-TT CS
  Rhabdo_ncap 223 lghlikvtgltikevllyifvknveeevv.....kmmepGqEid 261
                  l ++ + +++ i+++++++++++ e+e++     +m++ G+ i+
   CCD25153.1  35 LIGFDDFVNVIIEDAVEWVLNEEGEDEMImthhgRMLLSGNTIA 78 
                  55677889999****************97555557888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       285  (0.015896); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.19s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 754.86
//
Query:       CCD25154.1  [L=643]
Description: hypothetical protein NDAI_0E03370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.8e-83  279.6  35.3    5.8e-83  279.3  35.3    1.0  1  Cohesin_load  Cohesin loading factor
  ------ inclusion threshold ------
      0.067   13.5   0.0        0.2   12.0   0.0    1.9  1  DUF1376       Protein of unknown function (DUF1376)


Domain annotation for each model (and alignments):
>> Cohesin_load  Cohesin loading factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.3  35.3   6.5e-87   5.8e-83       5     595 ..      10     642 ..       7     643 .] 0.91

  Alignments for each domain:
  == domain 1  score: 279.3 bits;  conditional E-value: 6.5e-87
  Cohesin_load   5 elLlslaeeyltaAhevvskv..kseeeleqYykLiatGikCLeavlkdfklpprqearvtlrLariLleETenideAeeyls...kailiaek..n 94 
                   ++++ l+ ey+ +A ++++    +se  l++Yy+L+++Gi CL++++k+   + +q+  +t++L  +L++ T+n+d++e+y++   k  l++ +  +
    CCD25154.1  10 NEVYTLSQEYFGNATQLLQSGaiQSETALNEYYTLVQMGIYCLQLLKKNPTITIEQDIHATFKLIDVLYNDTNNLDLVETYAQsmlKK-LQNYNggT 105
                   57899************997666***********************************************************999865.4454556* PP

  Cohesin_load  95 rlidlkfvcqfLl...arllektnpka..Alksldeliedaet.....yqhnewvylfrllriqlslqt.dkdnsaalenlqslaelanrkgdkklf 180
                     ++ k+ cqf+l   ++ +++   ++  Alk+++el  ++++     y  ++w  lf++++ +l+ +   k+ +  l+++  +   + +++d++ f
    CCD25154.1 106 ETLEWKLRCQFVLiylVPFKKDVKLHYkiALKNCRELCLYLKQlqaatYSTSAWQCLFEFIQWTLLCKVkSKKVNNSLDLNIAIM--EGVTKDWEAF 200
                   *************8666666666655588**************999********************9997777777777765555..5557****** PP

  Cohesin_load 181 vvlslleallhlrrgspkdvlevlqeiiaaarslqldeeseqipqlkalllllellvslqkddvknvkekLkalqsfldelkdkk....swss.wse 272
                   v ls+ ++ll  r     d + +  +  +  +++           l+a+ l+l l+v +++d+  n+++kL+++ +f++++k++      ++  +++
    CCD25154.1 201 VRLSYANYLLVKRAD-LPDGILQDENDSTWWSGV--------DYRLYAWNLVLGLIVLIYRDE--NITNKLNEIGDFFKKNKTQLtfsdTLEMtVNP 286
                   **********55555.777777766666777777........459******************..*******************9999966666899 PP

  Cohesin_load 273 dgsiklkitersglklifswLpkkdllaLlYllsglvnlykkktdksekflqkalrqleklk.lksnnessnslstlsekikwlsvikcyvkfylil 368
                   d+ + +++        +f +++ k+ l+Ll+++s+l n+y++k+++s+ fl+k+ +++e+      + + s s+++l+e++kw++ i+++++f + +
    CCD25154.1 287 DLRLLIDL------PSVFDYKNIKNVLLLLQSVSYLINCYDEKANFSKIFLPKVAKTTERIIkSLMKGSTSLSINDLNESYKWQNDILKMCSFFQNW 377
                   99999999......89********************************************9984468999*************************** PP

  Cohesin_load 369 iafvlknwkkankeleeletasnkleskllkelaplllyLeglyaqsk...gdlkaAlaqyketaarkskerelyilsllNlviIlesevseddke. 461
                   + ++l   +  n  l++ e+          +  + ++l+L  +  +     + +++ laqy+e+ ++k++++e+++++llN++ Il s vs++ +  
    CCD25154.1 378 ETLILNPTDLMNSILTKQEQND--------EMGIENSLLLNSICNHLDtkdNNMTSTLAQYQEIINKKTTKNEIKMFALLNSYAILTSLVSKNISVq 466
                   ********77777777433222........6678999999999998776779*****************************************9999 PP

  Cohesin_load 462 .....lnkllsqleplcsnspnknislanall..lattslfepisin......eekssllealkaa.k........................aiknt 520
                        +n + +++e l+ + + k + +++++l  l+++ ++ep++        e+++ +l  lk++ +                        ++k++
    CCD25154.1 467 enierSNLITEKMENLFAQTDLKFNPIWHCTLtiLWIMCHLEPFTGTplpsteEQRNAYLTILKQYyNsnkiipnnsdnndetlenpnrtqfKLKKS 563
                   9********************************************99*****99************9356899999********************* PP

  Cohesin_load 521 qllsillnlisaklfegeleeqtkkseralqlakks....idysdglWvlvaetilaqlleqlgerakaeqteesldal 595
                   +ll illn+i+ +lfe++l+  + +s + ++ +kk+    i+y +glW+l+++ti+++ +e + ++ak+e ++++l+++
    CCD25154.1 564 LLLQILLNYIGGRLFETDLQTICSISSTLFHISKKQpmasIRYVMGLWHLMNSTIAMNAKEATLTKAKLENIVAKLQKN 642
                   ****************************999999999999**********************************99986 PP

>> DUF1376  Protein of unknown function (DUF1376)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.3e-05       0.2       2      44 ..     502     544 ..     501     548 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.3e-05
     DUF1376   2 yyplhigdflrdtahLsaeehgaYllLldlyyategpipdDdk 44 
                 ++ +h++ f       + e++ aYl +l+ yy++ + ip++ +
  CCD25154.1 502 WIMCHLEPFTGTPLPSTEEQRNAYLTILKQYYNSNKIIPNNSD 544
                 777888888888888999*********************8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1113  (0.0620782); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4583.88
//
Query:       CCD25155.1  [L=264]
Description: hypothetical protein NDAI_0E03380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-68  225.6   0.1    8.1e-33  112.2   0.1    2.2  2  TBP       Transcription factor TFIID (or TATA-binding protein
    0.00014   21.9   3.2       0.26   11.4   0.0    3.1  4  DUF3378   Domain of unknown function (DUF3378)
  ------ inclusion threshold ------
      0.044   13.6   0.2        0.3   10.9   0.0    2.2  2  DUF4295   Domain of unknown function (DUF4295)
       0.23   11.6   0.3       0.34   11.0   0.3    1.2  1  MDFI      MyoD family inhibitor


Domain annotation for each model (and alignments):
>> TBP  Transcription factor TFIID (or TATA-binding protein, TBP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   0.1   1.8e-36   8.1e-33       3      85 .]      90     170 ..      88     170 .. 0.97
   2 !  111.6   0.0   2.9e-36   1.3e-32       1      85 []     178     261 ..     178     261 .. 0.97

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 1.8e-36
                 EEEEEEEEEE-SSCE-HHHHHHHCCTTTEEE-TTTSSSEEEEETTTTEEEEE-TTSEEEEECESSHHHHHHHHHHHHHHHHHC CS
         TBP   3 kiqNvvasanlgleldLeklalkaekrnaeYeperfpglvyrlrepkvtaliFssGkvvitGakseeelreaakkiapilkkl 85 
                 + qN+va++nlg++ldL+++al+a  rnaeY+p+rf ++++r+repk+taliF+sGk+v+tGakse++++ a +k+a+i++k+
  CCD25155.1  90 TLQNIVATVNLGCRLDLKTVALHA--RNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKI 170
                 78*******************998..*******************************************************95 PP

  == domain 2  score: 111.6 bits;  conditional E-value: 2.9e-36
                 EEEEEEEEEEEE-SSCE-HHHHHHHCCTTTEEE-TTTSSSEEEEETTTTEEEEE-TTSEEEEECESSHHHHHHHHHHHHHHHHHC CS
         TBP   1 dfkiqNvvasanlgleldLeklalkaekrnaeYeperfpglvyrlrepkvtaliFssGkvvitGakseeelreaakkiapilkkl 85 
                 dfkiqN+v+s++++++++Le+la++ +  +++Yepe fpgl+yr+ +pk+++liF+sGk+v+tGak++ee+++a++ i+p+l+++
  CCD25155.1 178 DFKIQNIVGSCDVKFPIRLEGLAFS-HGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 261
                 69*********************99.79******************************************************875 PP

>> DUF3378  Domain of unknown function (DUF3378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.7         2     9e+03       9      21 ..      63      75 ..      59      82 .. 0.47
   2 !   11.4   0.0   5.8e-05      0.26      28      60 ..     124     156 ..     111     169 .. 0.86
   3 ?   -1.9   0.0      0.87   3.9e+03      19      41 ..     159     181 ..     155     182 .. 0.74
   4 !    9.9   0.0   0.00017      0.78      24      58 ..     211     245 ..     204     251 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
     DUF3378  9 ktikkmkeyyksk 21
                 +++++ ++ +++
  CCD25155.1 63 AQQQQLAKQEQEQ 75
                3444444443333 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 5.8e-05
     DUF3378  28 pyavfaakkndttItaYtSgKVlFQGknaeaeA 60 
                   +++++++++tt  ++ SgK ++ G++ e ++
  CCD25155.1 124 AAVIMRIREPKTTALIFASGKMVVTGAKSEDDS 156
                 56899**********************999876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.87
     DUF3378  19 ksklrskkppyavfaakkndttI 41 
                 +s + ++ ++ + faak  d  I
  CCD25155.1 159 ASRKYARIIQKIGFAAKFTDFKI 181
                 55666778999999999887765 PP

  == domain 4  score: 9.9 bits;  conditional E-value: 0.00017
     DUF3378  24 skkppyavfaakkndttItaYtSgKVlFQGknaea 58 
                  +  p+ +++  k++++  ++ SgK+++ G++  +
  CCD25155.1 211 PELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQRE 245
                 56689*************************98765 PP

>> DUF4295  Domain of unknown function (DUF4295)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.7e-05       0.3       3      36 ..     107     142 ..     107     151 .. 0.84
   2 ?   -0.1   0.1      0.18   8.2e+02      13      22 ..     159     168 ..     143     170 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.7e-05
     DUF4295   3 KvVAtlkkga..sgkkytKvIkmvKspKTGaYtFkE 36 
                 K+VA  + +a  + k+++ vI  ++ pKT a +F  
  CCD25155.1 107 KTVALHARNAeyNPKRFAAVIMRIREPKTTALIFAS 142
                 78887777766789******************9964 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.18
     DUF4295  13 sgkkytKvIk 22 
                  ++ky+++I+
  CCD25155.1 159 ASRKYARIIQ 168
                 6899999997 PP

>> MDFI  MyoD family inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   7.6e-05      0.34      22      86 ..      22      87 ..       4     104 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.6e-05
        MDFI 22 ksqkgnevltngsgvvngvsea.saadskklstpvekklkrklrsslsstsksskkskadatksqk 86
                ++++  e ++n++g +n+++ + + + + k+++p+   ++++++++l+ +++ +++ ++++++s  
  CCD25155.1 22 NTRQVWENQNNNTGTINDTNGGiASNTTAKIEGPEPGSMEEAQQQQLAKQEQEQEEEDDNSATSGI 87
                44556677888888888866551455677899*********************9999887776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1399  (0.07803); expected 358.6 (0.02)
Passed bias filter:                      838  (0.0467399); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 1842.38
//
Query:       CCD25156.1  [L=300]
Description: hypothetical protein NDAI_0E03390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-31  108.2   0.2    1.8e-14   53.5   0.0    3.2  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   2.2e-05      0.39       5      45 ..      10      50 ..       6     104 .. 0.71
   2 !   40.8   0.0   8.6e-15   1.5e-10       4      94 ..     118     200 ..     115     203 .. 0.91
   3 !   53.5   0.0   9.8e-19   1.8e-14       3      90 ..     208     291 ..     206     296 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.2e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSC CS
   Mito_carr  5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksks 45
                 +++ll ++ ag+++  v +P+d++  rl+++ ++  + k 
  CCD25156.1 10 GVARLLGSASAGILEIGVFHPVDTISKRLMSNHTKIVSGKE 50
                57889999**********************98887544443 PP

  == domain 2  score: 40.8 bits;  conditional E-value: 8.6e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++l++  aG++ g++  ++  Pldv+K++ qt+++  k +        + ki+k+eGl  lyrG++ +  r+ap s++ f+ + + k+++l
  CCD25156.1 118 KALRSATAGSIIGIG-EIILLPLDVLKIKRQTNPEAFKGR-------GFVKILKDEGLFNLYRGWGWTAARNAPGSFALFGGNAFAKEYIL 200
                 567888899999876.79999****************995.......689***********************************999875 PP

  == domain 3  score: 53.5 bits;  conditional E-value: 9.8e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                  +++++++++ ++++ + +v +Pldv+Ktr+q+ +  + +s+    l+++k+++k+eG++++++Gl+p+ll + p+ +  f+l ++l+
  CCD25156.1 208 ATWTQNFISSIVGASSSLIVSAPLDVIKTRIQNRSFDNPESG----LKIVKNTFKNEGFTAFFKGLTPKLLTTGPKLVFSFALAQSLI 291
                 67899******************************9999875....89********************************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       324  (0.0180713); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2279.85
//
Query:       CCD25157.1  [L=1100]
Description: hypothetical protein NDAI_0E03400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4264  (0.237827); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.41u 0.35s 00:00:01.75 Elapsed: 00:00:00.53
# Mc/sec: 6207.92
//
Query:       CCD25158.1  [L=653]
Description: hypothetical protein NDAI_0E03410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3425  (0.191031); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        42  (0.00234257); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.26u 0.33s 00:00:01.59 Elapsed: 00:00:00.54
# Mc/sec: 3653.00
//
Query:       CCD25159.1  [L=1092]
Description: hypothetical protein NDAI_0E03420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.49   10.8   5.5        4.9    7.6   0.8    3.8  4  WYL_3     WYL domain


Domain annotation for each model (and alignments):
>> WYL_3  WYL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.16   2.8e+03      37      60 ..     503     526 ..     499     529 .. 0.83
   2 ?    2.4   0.0     0.012   2.1e+02      15      32 ..     655     672 ..     648     683 .. 0.85
   3 ?   -2.2   0.0      0.32   5.8e+03      32      48 ..     707     723 ..     703     725 .. 0.80
   4 ?    7.6   0.8   0.00027       4.9       4      30 ..     793     819 ..     792     821 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.16
       WYL_3  37 sagaleklmqTseYkKyeaYlnfL 60 
                 + g l kl +Ts + K+   l+++
  CCD25159.1 503 TSGSLVKLDETSSMSKFDDALDYI 526
                 567899**********99988887 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.012
       WYL_3  15 gvtkedyAkkLgIadkia 32 
                 ++ +e+yA  L+ a+ki 
  CCD25159.1 655 LTEEEMYAHALKAAEKIV 672
                 6889************96 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.32
       WYL_3  32 akaessagaleklmqTs 48 
                 ++++++++al+  m+++
  CCD25159.1 707 NNTNTNNQALMDIMNSP 723
                 45999******999886 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.00027
       WYL_3   4 tkaemkkmmkdgvtkedyAkkLgIadk 30 
                 ++++mkk  k +  +e+yA+ L+I+ k
  CCD25159.1 793 NNKTMKKKKKPLSDEEMYAQALKITRK 819
                 5799********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1092 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2290  (0.127726); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.40u 0.33s 00:00:01.73 Elapsed: 00:00:00.55
# Mc/sec: 5927.89
//
Query:       CCD25160.1  [L=213]
Description: hypothetical protein NDAI_0E03430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-19   67.8   0.2      8e-19   66.9   0.2    1.5  1  Rsa3            Ribosome-assembly protein 3
  ------ inclusion threshold ------
      0.032   14.9   4.7      0.082   13.6   4.7    1.7  1  IMUP            Immortalisation up-regulated protein
       0.81    9.2  16.1       0.88    9.1  15.6    1.4  1  SR-25           Nuclear RNA-splicing-associated protein
        6.8    7.0  16.5         17    5.7  16.5    1.6  1  DUF755          Domain of unknown function (DUF755)


Domain annotation for each model (and alignments):
>> Rsa3  Ribosome-assembly protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.2   1.8e-22     8e-19       1      46 []     157     202 ..     157     202 .. 0.98

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 1.8e-22
        Rsa3   1 FrsfYLqllteeFgdDLDelRkapdFkdksLplLidaLkqGtnlFs 46 
                 ++++YL ll+e++gdD++elR+apdF++ksL+lL+++Lk+G+ +F+
  CCD25160.1 157 LKNQYLGLLFENYGDDINELRTAPDFTTKSLTLLANVLKEGSGMFD 202
                 689******************************************8 PP

>> IMUP  Immortalisation up-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.7   1.8e-05     0.082      40      67 ..      18      44 ..       6      57 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.8e-05
        IMUP 40 aaekprhghgkssssdsssssssssdsd 67
                  +k+r++   ss+sdssssss ssd +
  CCD25160.1 18 RRRKKRRTADVSSDSDSSSSSS-SSDNE 44
                3456666666888888888864.77765 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1  15.6    0.0002      0.88      46      91 ..      10      55 ..       2     125 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0002
       SR-25 46 ekeeerskekkkkkrrrssssssssssssssssssssssssddrkk 91
                +k+++++++++kk+r++  ss s+ssssssss    + + +d+ ++
  CCD25160.1 10 KKNNNKKSRRRKKRRTADVSSDSDSSSSSSSSDNEEIITNDDNVEN 55
                3333444445555555555666666666655555555444444333 PP

>> DUF755  Domain of unknown function (DUF755)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  16.5    0.0037        17      92     121 ..      13      42 ..       7      45 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0037
      DUF755  92 rsakkksakkrkksssSSssssssssssse 121
                 + +k++++kkr++   SS+s+ssssssss+
  CCD25160.1  13 NNKKSRRRKKRRTADVSSDSDSSSSSSSSD 42 
                 233444444445666777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1766  (0.0984996); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 1516.27
//
Query:       CCD25161.1  [L=857]
Description: hypothetical protein NDAI_0E03440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-50  168.4   1.3    1.6e-49  167.5   1.3    1.5  1  Utp13        Utp13 specific WD40 associated domain
    7.8e-48  159.5  28.5    6.1e-07   30.0   0.2   10.8 10  WD40         WD domain, G-beta repeat
    1.2e-17   64.0   7.7     0.0034   17.7   0.1    7.5  8  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    9.4e-08   31.7   8.9      0.029   13.7   0.1    3.8  4  WD40_like    WD40-like domain
    0.00026   20.1  15.4     0.0022   17.0   0.2    5.4  6  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
     0.0083   15.5   0.1        2.6    7.3   0.0    3.0  3  Nbas_N       Neuroblastoma-amplified sequence, N terminal
  ------ inclusion threshold ------
      0.059   13.2   1.3         24    4.7   0.0    3.7  4  eIF2A        Eukaryotic translation initiation factor eIF2A
      0.072   12.4   0.4       0.56    9.4   0.1    2.2  2  DUF4800      Domain of unknown function (DUF4800)


Domain annotation for each model (and alignments):
>> Utp13  Utp13 specific WD40 associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.5   1.3   7.2e-53   1.6e-49       1     142 []     707     853 ..     707     853 .. 0.95

  Alignments for each domain:
  == domain 1  score: 167.5 bits;  conditional E-value: 7.2e-53
                 -HHHHHHHHCCHHHHHHHHHHHSSSTHHHHHHHHHHHS-SS-.....-STSSSSSHHHHHHHHC--HHHHHHHHHHHHHHHTSTTTHHHHHHHHHHHHH CS
       Utp13   1 eqelqnllrkkdyreAiaLAlkldqpkrllkllkevleseee.....eeesitgskevdevlkslskeqleklLkyirdWntnartsevAqrvLnailk 94 
                 eq+l+n+l ++d+++A+ LAl+ld+p+rl+++lk+ l s +e     + + i  +ke+d+++ +ls++ql  lLk++rdWntnart+++Aqr++++il 
  CCD25161.1 707 EQSLKNFLLNEDWTNAFLLALTLDHPMRLFNVLKQSLLSLQEqeegaDGKIIIFNKELDKIIGKLSNDQLILLLKRCRDWNTNARTHTIAQRTIRCILL 805
                 7**********************************998887756665555666678******************************************* PP

                 HS-HHHHHS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXX CS
       Utp13  95 slsaeelleleglkellealipYteRHlkRldrlveesylldytlqem 142
                 ++++ +l+e++gl +++e++ipYt+RH++R+d+lve+sy+ldy+l em
  CCD25161.1 806 QYNIVQLSEIPGLVQIIESIIPYTQRHFDRVDNLVEQSYVLDYALVEM 853
                 *********************************************998 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0072        16       8      27 ..      59      80 ..      52      92 .. 0.73
   2 ?    3.2   0.1     0.083   1.9e+02      13      36 ..     123     144 ..     109     146 .. 0.71
   3 !   21.4   1.7   1.5e-07   0.00033       4      38 .]     153     192 ..     150     192 .. 0.77
   4 !   17.5   0.0   2.5e-06    0.0056       2      37 ..     197     240 ..     196     241 .. 0.81
   5 !   20.9   0.0   2.1e-07   0.00046       4      38 .]     415     450 ..     413     450 .. 0.91
   6 ?    5.5   0.0     0.016        35       6      37 ..     463     500 ..     461     501 .. 0.74
   7 !   30.0   0.2   2.7e-10   6.1e-07       7      38 .]     526     560 ..     521     560 .. 0.87
   8 !   23.0   0.2   4.4e-08   9.9e-05       2      38 .]     565     602 ..     564     602 .. 0.90
   9 !   20.5   0.0   2.7e-07   0.00062       4      38 .]     609     644 ..     606     644 .. 0.78
  10 !   21.2   0.6   1.7e-07   0.00038       1      38 []     648     686 ..     648     686 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0072
                ESSSS...EEEEEEETTSSEEEE CS
        WD40  8 tGHss...vtslafspdgawlas 27
                t   +   +t+l+  pdg++l+s
  CCD25161.1 59 TNN-DeqeITCLKLTPDGKFLIS 80
                434.3355************985 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.083
                 EEEEEEETTSSEEEEEETTSEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvri 36 
                 + ++  ++ ++++a G+ Dg++ +
  CCD25161.1 123 IMDC--DSTSTLVAVGGTDGSIIV 144
                 6666..888999999*99***976 PP

  == domain 3  score: 21.4 bits;  conditional E-value: 1.5e-07
                 EEEEESS.SSEEEEE...EETTSSEEE.EEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtsla...fspdgawla.sGsdDgtvriWd 38 
                 +++++GH + ++s++   +++ + wl+ sG+ +g v+iWd
  CCD25161.1 153 THSFKGHgGTISSVKfygNNDTNCWLLcSGDTNGMVKIWD 192
                 799****666*****66666666666616666*******9 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 2.5e-06
                 EEEEEEESS.SSEEEEE...EETTSSE....EEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtsla...fspdgaw....lasGsdDgtvriW 37 
                 +c++tl  H s v++l+   +s++++     l+sGs+D+ v +W
  CCD25161.1 197 SCIHTLQEHnSAVRGLDvrsVSKENDNvvlqLLSGSRDNIVNLW 240
                 7********555888877776777777667768*********** PP

  == domain 5  score: 20.9 bits;  conditional E-value: 2.1e-07
                 EEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                 + t++GH++  +sla   dg+wla++s+D+t  +W+
  CCD25161.1 415 METYEGHTDlLNSLAATEDGQWLATASKDHTSILWK 450
                 5689***8857**********************995 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.016
                 EEESS.SSEEEEE.....EETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtsla.....fspdgawlasGsdDgtvriW 37 
                 ++ GH ssvt++         +  +l+++s D t++ W
  CCD25161.1 463 KFIGHsSSVTAVGlpnvlLRGYPEFLITASNDLTIKKW 500
                 588**888**9955555555555559999999999988 PP

  == domain 7  score: 30.0 bits;  conditional E-value: 2.7e-10
                 EE..SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 lt..GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +t  +H ++++s++ sp+ +++a+Gs+D+++++W+
  CCD25161.1 526 YTrhAHdKDINSISISPNDSLIATGSYDKSCKLWN 560
                 442278999*************************8 PP

  == domain 8  score: 23.0 bits;  conditional E-value: 4.4e-08
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++ tl  H  ++++++f++  +++a++s D+t+++W+
  CCD25161.1 565 ELVATLNNHkRGIWDVSFCQFDKLIATCSGDKTIKLWS 602
                 7889999**555****************88*******5 PP

  == domain 9  score: 20.5 bits;  conditional E-value: 2.7e-07
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l+t+ GH + v  + f   ++ l+s++ Dg ++iWd
  CCD25161.1 609 LKTFAGHtNAVQRCTFINKQKQLVSSGADGLIKIWD 644
                 899****999977776666666666666*******9 PP

  == domain 10  score: 21.2 bits;  conditional E-value: 1.7e-07
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 g+cl+tl+GH + +++l +  dg +++s++ Dg + +W+
  CCD25161.1 648 GDCLKTLDGHdNRIWALTTWNDGELIVSADADGVLQFWN 686
                 68********888****************99*******8 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00016      0.36      28      86 ..      54     114 ..      26     119 .. 0.75
   2 !    9.7   0.0   0.00045         1      51      89 ..     131     168 ..     127     172 .. 0.88
   3 !    7.0   0.0    0.0032       7.1      51      84 ..     177     209 ..     157     219 .. 0.75
   4 ?   -0.1   0.0      0.52   1.2e+03      40      66 ..     424     450 ..     415     464 .. 0.76
   5 !   14.8   0.1   1.1e-05     0.025      28      80 ..     522     574 ..     515     579 .. 0.89
   6 !   17.7   0.1   1.5e-06    0.0034       2      89 ..     581     667 ..     580     670 .. 0.91
   7 ?    2.4   0.0     0.086   1.9e+02      36      80 ..     656     701 ..     653     706 .. 0.76
   8 ?   -3.0   0.0       4.3   9.7e+03      58      79 ..     753     774 ..     752     781 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00016
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpdgklLa.vaysdgevrlldae..sgkvvhslsvksekavtc 86 
                  r+ t+ ++++++e+++L+  pdgk+L  +a +  ++++++    +g++  + + +s + +++
   CCD25161.1  54 RLTTI-TNNDEQEITCLKLTPDGKFLIsIALQSQALKIYNLTaiEGETTMNTKQQSLQPIKT 114
                  45555.78999*************98637888999999875511566666666666555555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00045
  ANAPC4_WD40  51 klLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +l av+  dg++ ++d+e+g + hs++ +   +++++++
   CCD25161.1 131 TLVAVGGTDGSIIVVDIENGFITHSFKGHGG-TISSVKF 168
                  689***********************99888.5888876 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0032
  ANAPC4_WD40  51 klLavaysdgevrlldaesgkvvhslsvksekav 84 
                   lL+ +  +g v++ d  +  ++h+l+ +++  v
   CCD25161.1 177 WLLCSGDTNGMVKIWDLVKRSCIHTLQEHNSA-V 209
                  38************************998873.4 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.52
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlld 66 
                    +sLa  +dg+ La a +d +  l +
   CCD25161.1 424 LLNSLAATEDGQWLATASKDHTSILWK 450
                  567899999*******99998766654 PP

  == domain 5  score: 14.8 bits;  conditional E-value: 1.1e-05
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  +v + +++++d+ ++s++ +p+++l+a +  d +++l +  sg++v +l+ ++
   CCD25161.1 522 KVSEYTRHAHDKDINSISISPNDSLIATGSYDKSCKLWNLDSGELVATLNNHK 574
                  455568899**************************************998776 PP

  == domain 6  score: 17.7 bits;  conditional E-value: 1.5e-06
  ANAPC4_WD40   2 swcptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl.gW 89 
                  s+c+   LiA  + d+ + +  l+   v ++  +++ + v+   + ++ k L+ + +dg +++ d  +g+++++l+ ++++ +  l +W
   CCD25161.1 581 SFCQFDKLIATCSGDKTIKLWSLDTFAVLKT-FAGHTNAVQRCTFINKQKQLVSSGADGLIKIWDCTTGDCLKTLDGHDNR-IWALtTW 667
                  899999***********************99.78999**************************************999885.5444156 PP

  == domain 7  score: 2.4 bits;  conditional E-value: 0.086
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrll.daesgkvvhslsvks 80 
                  ++d+++ +L   +dg+l++ a +dg +++  d  + +++++l+ ++
   CCD25161.1 656 GHDNRIWALTTWNDGELIVSADADGVLQFWnDCTELEILQNLENEK 701
                  6788899999889************999872445556666666555 PP

  == domain 8  score: -3.0 bits;  conditional E-value: 4.3
  ANAPC4_WD40  58 sdgevrlldaesgkvvhslsvk 79 
                  +dg++ +++ e  k++ +ls +
   CCD25161.1 753 ADGKIIIFNKELDKIIGKLSND 774
                  6999999999999999888765 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.9   4.2e+03      59      93 ..      28      63 ..      24      67 .. 0.74
   2 !   11.5   0.3     6e-05      0.13       4      64 ..     122     185 ..     119     225 .. 0.82
   3 !   12.7   0.0   2.5e-05     0.057       2      55 ..     534     587 ..     533     594 .. 0.86
   4 !   13.7   0.1   1.3e-05     0.029       4     131 ..     578     721 ..     575     812 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.9
   WD40_like 59 vtlDGtills.lleneeevenekieedistvkvidd 93
                 + DG il + +l   e+++   ++e ++t+++ d+
  CCD25161.1 28 ISQDGSILATpVLDDIEIIKLSPLQERLTTITNNDE 63
                578999987614455558999999999999988776 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6e-05
   WD40_like   4 YsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd...lilvvtlDGt 64 
                 Y +d +  ++l+++Gg d  + v+++e++ +  ++++    +  vk+  ++     l ++ D +
  CCD25161.1 122 YIMDCDSTSTLVAVGGTDGSIIVVDIENGFITHSFKGHGGTISSVKFYGNNdtnCWLLCSGDTN 185
                 899*************************************999999998876667888887743 PP

  == domain 3  score: 12.7 bits;  conditional E-value: 2.5e-05
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddl 55 
                 +i si is++ sli+ G+ d+ c++ +l+s+e+v  +++ +  +  v + + d+
  CCD25161.1 534 DINSISISPNDSLIATGSYDKSCKLWNLDSGELVATLNNHKRGIWDVSFCQFDK 587
                 6889*********************************99999887776666555 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 1.3e-05
   WD40_like   4 YsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilvvt.lDGtillslleneeevenek.ieedistvkv.iddklliGt 99 
                 + + + +  +li+  + d+++++ +l++  +   +++ ++ v+ + ++++++ lv +  DG i   + + ++  ++ +  ++ i   ++  d++l++ +
  CCD25161.1 578 WDVSFCQFDKLIATCSGDKTIKLWSLDTFAVLKTFAGHTNAVQRCTFINKQKQLVSSgADGLIKIWDCTTGDCLKTLDgHDNRIWALTTwNDGELIVSA 676
                 56666677889****************************************99998658****999999999777765245667655551456888888 PP

   WD40_like 100 nkGsiyvfskdlqleevllgqsseIkeikie.............n 131
                 +   +  f +d +  e+l + + e ++++ e             n
  CCD25161.1 677 DADGVLQFWNDCTELEILQNLENEKEKVENEqslknfllnedwtN 721
                 888888888886666677777777777776655555555555543 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.1   2.5e+03     192     208 ..      25      41 ..      15      48 .. 0.81
   2 !   17.0   0.2   9.7e-07    0.0022     148     288 ..      81     207 ..      55     238 .. 0.83
   3 ?   -0.8   0.0      0.26   5.8e+02     141     209 ..     373     444 ..     349     454 .. 0.64
   4 !    6.2   0.8    0.0019       4.3     244     284 ..     570     613 ..     512     635 .. 0.85
   5 ?    2.6   0.2     0.024        54     267     284 ..     638     655 ..     627     680 .. 0.84
   6 ?   -0.9   0.0      0.28   6.3e+02     198     286 ..     669     700 ..     654     733 .. 0.54

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
    Ge1_WD40 192 eaafspdGtalatased 208
                  a++s dG  lat   d
  CCD25161.1  25 IATISQDGSILATPVLD 41 
                 47899999999988777 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 9.7e-07
    Ge1_WD40 148 vltrgdkaeiwsvdmiaskygsgelsveeieegllkieehsliveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldn 246
                 + ++++  +i+++++i+ + ++   +++ +   +lk+++ s i++    +  t +a+  +dG +      ++d e+    h +k h+G ++ss+ f  n
  CCD25161.1  81 IALQSQALKIYNLTAIEGETTMNTKQQSLQPIKTLKLSSPSYIMDCD--STSTLVAVGGTDGSI-----IVVDIENGFITHSFKGHGG-TISSVKFYGN 171
                 567788899********9998888888888889***********975..5679*********86.....5678899999*******88.6999999877 PP

    Ge1_WD40 247 hkeesdeqfWrfaitgadnnselklWscelWtClqtikfaps 288
                      d+++W  ++ + d n  +k+W     +C+ t++ + s
  CCD25161.1 172 N----DTNCW--LLCSGDTNGMVKIWDLVKRSCIHTLQEHNS 207
                 4....67889..67899*******************986655 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.26
    Ge1_WD40 141 deaskllvltrgdkaeiwsvdmiaskygsgelsveeiee..gllkieehs.liveaafspdGtalatasedG 209
                 ++ +kl + t++    i  v   +++    +++ ++++    +   e h+ l+ + a + dG  latas+d 
  CCD25161.1 373 QDLNKLALATNSPTLRIIPVPSTMKEAADPNTQDNSADLpiNMETYEGHTdLLNSLAATEDGQWLATASKDH 444
                 555555555555555555555555555444444433333223444455664566667888999999999996 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0019
    Ge1_WD40 244 ldnhkee.sdeqfWrf..aitgadnnselklWscelWtClqtik 284
                 l+nhk+   d++f +f  +i++++ ++ +klWs +++  l+t  
  CCD25161.1 570 LNNHKRGiWDVSFCQFdkLIATCSGDKTIKLWSLDTFAVLKTFA 613
                 678888636999999866799*******************9975 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.024
    Ge1_WD40 267 selklWscelWtClqtik 284
                   +k+W c +  Cl+t+ 
  CCD25161.1 638 GLIKIWDCTTGDCLKTLD 655
                 569*************85 PP

  == domain 6  score: -0.9 bits;  conditional E-value: 0.28
    Ge1_WD40 198 dGtalatasedGevkffqvyledeeeprCLheWkPhdGkslssllfldnhkeesdeqfWrfaitgadnnselklWs.celWtClqtikfa 286
                 dG                                                            i +ad++  l+ W+ c   + lq ++  
  CCD25161.1 669 DGEL----------------------------------------------------------IVSADADGVLQFWNdCTELEILQNLENE 700
                 4444..........................................................5555555555555445555555555554 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.011        25     220     272 ..      54     107 ..      29     113 .. 0.83
   2 ?   -0.9   0.0      0.36   8.1e+02      54      74 ..     175     195 ..     171     204 .. 0.88
   3 !    7.3   0.0    0.0012       2.6     214     272 ..     518     575 ..     497     581 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.011
      Nbas_N 220 klysrkaeekdgvfkmslspdgtllavihf.sgklsiwdipslkqrgeweqeeq 272
                 +l + ++++++ +  + l+pdg  l  i + s  l i+++ +++ +++ + ++q
  CCD25161.1  54 RLTTITNNDEQEITCLKLTPDGKFLISIALqSQALKIYNLTAIEGETTMNTKQQ 107
                 566777888899999**********9998736789*******999998887776 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.36
      Nbas_N  54 dctllayaestgtvrvfdlvg 74 
                 +c ll+  ++ g v+++dlv 
  CCD25161.1 175 NCWLLCSGDTNGMVKIWDLVK 195
                 799****************96 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.0012
      Nbas_N 214 lkllslklysrkaeekdgvfkmslspdgtllavihfsgklsiwdipslkqrgeweqeeq 272
                  +++++  y+r+a++kd +  +s+sp+ +l+a+  +  +  +w++ s ++ ++ +++++
  CCD25161.1 518 THIIKVSEYTRHAHDKD-INSISISPNDSLIATGSYDKSCKLWNLDSGELVATLNNHKR 575
                 46778889******998.899************************99888887776655 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       0.5   1.1e+03     134     163 ..      54      83 ..      42     112 .. 0.66
   2 ?    4.7   0.0     0.011        24     121     147 ..     182     208 ..     165     243 .. 0.88
   3 ?    4.2   0.1     0.015        35      66     142 ..     539     613 ..     514     653 .. 0.71
   4 ?    3.1   0.1     0.034        77      78     147 ..     549     619 ..     544     688 .. 0.59

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.5
                 TTEEEEEEE-TT--EEEE-TTSSEEEEEE- CS
       eIF2A 134 kkkkiakaeaanatlvewspdgryvlTatt 163
                 ++++i++ ++++ t ++  pdg++++    
  CCD25161.1  54 RLTTITNNDEQEITCLKLTPDGKFLISIAL 83 
                 556777777777777778888877765443 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.011
                 TSSS-EEEEEETTTTEEEEEEE-TT-- CS
       eIF2A 121 gnlaGeleiwdvkkkkkiakaeaanat 147
                 g+++G ++iwd  k+++i+++++ n+ 
  CCD25161.1 182 GDTNGMVKIWDLVKRSCIHTLQEHNSA 208
                 899*****************9998876 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.015
                 EE-TTSS-EEEEESSSSCEEEEEECS.CEEEEEEEEES--..EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE CS
       eIF2A  66 aWspkskefaviyGkmpakvslfdlk.vkviskleeqkrN..tiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae 142
                 + sp+    ++  G  +++ +l++l+ ++++++l+++kr    + f++++kl++++    +   +++w  +++  ++++ 
  CCD25161.1 539 SISPND--SLIATGSYDKSCKLWNLDsGELVATLNNHKRGiwDVSFCQFDKLIATCSGDKT---IKLWSLDTFAVLKTFA 613
                 444443..36778999999999999668999999998886336899999999998864444...7777777777777654 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.034
                 ESSSSCEEEEEECS.CEEEEEEEEES--..EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE.-TT-- CS
       eIF2A  78 yGkmpakvslfdlk.vkviskleeqkrN..tiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae.aanat 147
                  G  +++ +l++l+ ++++++l+++kr    + f++++kl++++    +   +++w  +++  ++++  ++na+
  CCD25161.1 549 TGSYDKSCKLWNLDsGELVATLNNHKRGiwDVSFCQFDKLIATCSGDKT---IKLWSLDTFAVLKTFAgHTNAV 619
                 5666666666666446666666666664224666666666666653333...5555555555555543133333 PP

>> DUF4800  Domain of unknown function (DUF4800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.15   3.4e+02      10      87 ..     240     319 ..     233     343 .. 0.74
   2 ?    9.4   0.1   0.00025      0.56     128     165 ..     679     716 ..     673     723 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.15
     DUF4800  10 camasaklhtllqtkvilskeeacfllgkleaillksieeks.etasflvplirt.LldkiaelltlqllLpsLPatngs 87 
                  +    kl +ll+t  ++++ e+c  + + ++ l   i ++  e++ +l+ l +   ++++ ++ +    + +LP t  +
  CCD25161.1 240 WEFNLRKLCKLLKTLPVNQQVESCGFIHDHDNELQDIIYTAGgEAIFQLISLSKGsVIKRTVKPTEELFIIGTLPFTATN 319
                 566778999***************99998899998888766658888899988752445555555544556666666555 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00025
     DUF4800 128 eemslfwkscyealmvnshkrdkergesklkfqelive 165
                 + + +fw++c+e  + +  + +ke+ e+ + +++++++
  CCD25161.1 679 DGVLQFWNDCTELEILQNLENEKEKVENEQSLKNFLLN 716
                 56779****************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (857 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       732  (0.0408277); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5917.12
//
Query:       CCD25162.1  [L=694]
Description: hypothetical protein NDAI_0E03450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-81  273.4   6.0    1.8e-81  273.4   6.0    2.4  2  PIP5K     Phosphatidylinositol-4-phosphate 5-Kinase
  ------ inclusion threshold ------
       0.16   12.5  16.3       0.31   11.6   8.1    2.7  2  Di19_C    Stress-induced protein Di19, C-terminal
        1.8    9.1  19.4        2.8    8.4  19.4    1.4  1  SOBP      Sine oculis-binding protein
        2.9    8.5  13.9       0.65   10.6   2.0    2.5  2  Pex14_N   Peroxisomal membrane anchor protein (Pex14p) conser


Domain annotation for each model (and alignments):
>> PIP5K  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.1   8.4         4   1.8e+04     193     194 ..     154     190 ..      89     360 .. 0.66
   2 !  273.4   6.0     4e-85   1.8e-81       2     273 ..     412     687 ..     411     688 .. 0.90

  Alignments for each domain:
  == domain 1  score: -8.1 bits;  conditional E-value: 4
                 -...................................- CS
       PIP5K 193 e...................................a 194
                 +                                   +
  CCD25162.1 154 NllshvknlskikttepfrsktkqlpamrrsslqqvQ 190
                 1333344445555555543333332222222222220 PP

  == domain 2  score: 273.4 bits;  conditional E-value: 4e-85
                 SS-EEEE----SSS--EEEETTSSEEEEEE-HHHHHHHHHHHHHHHHHHTT-TT--S--EEEEEEEE.E....TTEEEEEEEEE-SS-TTS--SEEEEE CS
       PIP5K   2 ksalkelsseGkSgsffylteDkkfiiKtitksevkflrkllpeYyehvkenpnsLltrfyglhrvklk....ggkkvrfvVmenlfptdkeiheryDL 96 
                 k++l+e++s+GkSgsffy+++D+k+iiKti+++e+  lr++l +Yy+h+k+npn+L+++fygl+r+k++    +++k++f+Vm+n+fp+d+ ++ ++DL
  CCD25162.1 412 KYILNEFNSPGKSGSFFYFSRDYKYIIKTIHHDEHIHLRNTLLRYYNHLKSNPNTLICQFYGLYRIKFPkrffRKRKIYFLVMNNVFPPDLAMNVTFDL 510
                 689****************************************************************999***************************** PP

                 -S--TT-S--HHHH....TSSS-E....................EEHHHHHHHST.EEE.-HHHHHHHHHHHHHHHHHHHHTTB-S-EEEEEEEB---- CS
       PIP5K  97 KGstvgReakkkee....ekkekt....................lkDlDliekkeklkl.gkekreelleqlekDvefLeslnimDYSLLlGihnseke 170
                 KGst+gR  ++  +    +                         lkDl++ +++++l + ++ek+e++l+ql+ Dve+L ++n+mDYSLL+Gih+ e++
  CCD25162.1 511 KGSTWGRFSQTPLQsmpqN----DiessnndnddddnnkmisivLKDLNWLKNQNRLDFgSHEKNEAILKQLKTDVELLIDMNTMDYSLLIGIHFLESD 605
                 ********99665534330....24567778899999999*******************66677899*****************************966 PP

                 ----------------------------------------SEEEEESSSSEEEEEEEEE----B----------------------TTHHHHHHHHHHH CS
       PIP5K 171 ekeekkesessssekesekseeeaseeeeeseeeedeegekakeensedgkevyylgiIDiLqkynlkKklehalkslkkdkksisavpPkeYaeRFlk 269
                 ++++k+e+++                     +  ++ + + + +++++ + +++y+giID+L++y++ Kkle++++sl++d k++savpP++Y +RF+k
  CCD25162.1 606 RTDDKEEDTN---------------------DGGNRATFKYNVGDHEKRKCVICYIGIIDCLTNYSMVKKLETIWRSLNHDYKTVSAVPPRFYGNRFYK 683
                 6555554333.....................23344556677888999999************************************************ PP

                 HHHH CS
       PIP5K 270 fiek 273
                 ++e+
  CCD25162.1 684 YVEE 687
                 9986 PP

>> Di19_C  Stress-induced protein Di19, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   8.1     7e-05      0.31      12      81 ..     104     173 ..      94     191 .. 0.63
   2 ?    5.1   1.1    0.0071        32      24      64 ..     243     283 ..     225     315 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7e-05
      Di19_C  12 hLqsllggsssvssssnaapDpLLSsfilnlptsdeeesskpessveessvkksseekvlersvdsslse 81 
                 +L+++ +g  + +  ++   Dp LSsfi++ p+s +++ss+++ s++++    s  ++ ++ +  ++  +
  CCD25162.1 104 NLKIFQKGVIKNAMPKKKINDPSLSSFISSSPSSSSSSSSSSSNSEKSTKNLLSHVKNLSKIKTTEPFRS 173
                 77777777733124566669************99888888865665555555555555555555544433 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0071
      Di19_C  24 ssssnaapDpLLSsfilnlptsdeeesskpessveessvkk 64 
                 ++ +n ++D LLS   +n+++s  ++++  ++ +ee++  +
  CCD25162.1 243 QHHQNHDTDELLSAVTSNVSSSMVSTTTTNTTNSEERYPLS 283
                 68899*************98887777777444444443333 PP

>> SOBP  Sine oculis-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  19.4   0.00063       2.8      78     263 ..     119     303 ..      37     333 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00063
        SOBP  78 rsrsaspaskrsesvspepsksaspsssptssnsskplisvassskllaeksqepaslveaplepkkqrkkkpglrkpkqvkagsskssetkagllqkq 176
                 +++ + p  ++  s+sp+ s+s+s+sss +++++++ l +v++ sk+ ++++  ++++++ p   +++ ++ +++++++q+k   ++ s  ++ + q++
  CCD25162.1 119 KKKINDPSLSSFISSSPSSSSSSSSSSSNSEKSTKNLLSHVKNLSKIKTTEPF-RSKTKQLPAMRRSSLQQVQTHNPQEQKKVV-HRRSLPPRRNTQES 215
                 56677777777778887766777777777555555556666666555554444.444444444444455555555555444433.33333343333333 PP

        SOBP 177 .qkalplsaeleessvpkpflrpppsiqelqsslpnqslpkiapppk....ppstlappsngaerppfsplleppksasenppgleepaprg 263
                   +++p+ a  +++++p+     ++s q+ q+     +l  +++ +      + t+++++n++er p+s     p+ + +++p+ ++ +p g
  CCD25162.1 216 iATTIPFFALRHSQIFPLTDDEINHSLQHHQNHDTD-ELLSAVTSNVsssmVSTTTTNTTNSEERYPLSTD---PEDRYQQNPSHSHDSPSG 303
                 466677777777777888888888886665554444.4444444444355577777778888888888875...444444444444444443 PP

>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   4.4     0.037   1.7e+02      40     130 ..     114     214 ..     103     226 .. 0.36
   2 ?   10.6   2.0   0.00015      0.65      34      93 ..     233     297 ..     232     320 .. 0.51

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.037
     Pex14_N  40 eeaLkraereeease...savaassas..eqaqeesasssatpqpqaasqtsqsspspsppaqqqqqqy.......rpPivtypefltk..ppkppppP 124
                 + a+ +++ ++ + +   s   +s++s  ++++++s+s+++t++  +  ++ ++ +++ +p  ++++q         ++++t++ + +k   +++  pP
  CCD25162.1 114 KNAMPKKKINDPSLSsfiS---SSPSSssSSSSSSSNSEKSTKNLLSHVKNLSKIKTT-EPFRSKTKQLpamrrssLQQVQTHNPQEQKkvVHRRSLPP 208
                 5555554433333322221...222221111111111111111111111111111111.1222222222344444433344433333333455556677 PP

     Pex14_N 125 lrtwrd 130
                 +r++++
  CCD25162.1 209 RRNTQE 214
                 776655 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00015
     Pex14_N  34 LtqeEIeeaLkraereeease..sa.vaassas...eqaqeesasssatpqpqaasqtsqsspsps 93 
                 Lt++EI+  L+  +++++++e  sa +++ s+s   ++++++++s+++ p ++ ++ + q++ps+s
  CCD25162.1 233 LTDDEINHSLQH-HQNHDTDEllSAvTSNVSSSmvsTTTTNTTNSEERYPLSTDPEDRYQQNPSHS 297
                 8***********.55666665663332222222332222222222222222232322222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1288  (0.0718389); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 4595.60
//
Query:       CCD25163.1  [L=949]
Description: hypothetical protein NDAI_0E03460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-09   37.1  12.2    3.9e-09   36.5  12.2    1.3  1  Zn_clus     Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
        5.5    7.1  24.9        1.4    9.0   6.5    3.3  2  SUIM_assoc  Unstructured region C-term to UIM in Ataxin3


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5  12.2   4.3e-13   3.9e-09       2      39 ..      63      99 ..      62     101 .. 0.88

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 4.3e-13
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39
                +CdnC++++vKCd+ kP+C++C+  +l+C+ y+ ++ r
  CCD25163.1 63 GCDNCKRRRVKCDESKPHCQKCVNMQLHCV-YTPPQPR 99
                7*****************************.6665554 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  10.4     0.023   2.1e+02      18      52 ..     193     228 ..     174     243 .. 0.62
   2 ?    9.0   6.5   0.00016       1.4      28      45 ..     352     369 ..     348     385 .. 0.59

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.023
  SUIM_assoc  18 eLrkrreaYFEKqeqqqqqq.qqqqdppgqlshpre 52 
                 e ++   a   Kq+++qq+q qqq ++ +ql h++ 
  CCD25163.1 193 EIQRQTIAKLQKQQEEQQKQlQQQLQQLQQLQHLQQ 228
                 555555555566555555441455556667777654 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00016
  SUIM_assoc  28 EKqeqqqqqqqqqqdppg 45 
                  +q+qqqqqqqqq+  ++
  CCD25163.1 352 NQQQQQQQQQQQQTSSSN 369
                 444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (949 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3680  (0.205254); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.32u 0.36s 00:00:01.68 Elapsed: 00:00:00.52
# Mc/sec: 5487.78
//
Query:       CCD25164.1  [L=498]
Description: hypothetical protein NDAI_0E03470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       733  (0.0408835); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 3320.58
//
Query:       CCD25165.1  [L=429]
Description: hypothetical protein NDAI_0E03480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3244.23
//
Query:       CCD25166.1  [L=1085]
Description: hypothetical protein NDAI_0E03490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-35  122.2   6.0    1.3e-35  122.2   6.0    4.6  4  CRF1      Transcription factor CRF1


Domain annotation for each model (and alignments):
>> CRF1  Transcription factor CRF1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   3.3         1   1.8e+04      78      78 ..     113     113 ..      71     155 .. 0.52
   2 ?   -5.7   6.1         1   1.8e+04      75      88 ..     219     232 ..     192     325 .. 0.66
   3 ?   -2.0   0.2      0.25   4.4e+03      66      96 ..     375     407 ..     366     414 .. 0.54
   4 !  122.2   6.0   7.2e-40   1.3e-35       1     113 []     673     784 ..     673     784 .. 0.86

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 1
        CRF1  78 t 78 
                 +
  CCD25166.1 113 N 113
                 1 PP

  == domain 2  score: -5.7 bits;  conditional E-value: 1
        CRF1  75 gentanngagaqtl 88 
                   n++nn ++++++
  CCD25166.1 219 YTNNNNNNNNNNNK 232
                 22222211111111 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.25
        CRF1  66 kdkedactkgentanngagaqtlnetse..sdk 96 
                 + + +   ++en+ n+ + ++t ++ ++  +d+
  CCD25166.1 375 EGDDPVDLEMENNLNGAYTNHTDEDDEDeeDDD 407
                 445556666777776666555544433321233 PP

  == domain 4  score: 122.2 bits;  conditional E-value: 7.2e-40
        CRF1   1 destDedetLPtplelsaelakekatelvssanislkPPvlGtWakednkpfgiiDGlstkSLqekdkedactk.gentanngagaqtlnetsesdkde 98 
                 destDed++LP+p++++++++ +ka+e+vs+++++l+PP+lGtW ++dnkpf+iiDGlstkSL+   +e+++ + ++++++++   +++++ s s+ de
  CCD25166.1 673 DESTDEDDNLPPPSSRNKNIG-SKAKEIVSANVVGLRPPKLGTW-ETDNKPFSIIDGLSTKSLYALIQEHQQLHeQNQREQSPDISKNNDSNSVSNGDE 769
                 89*******************.9*********************.*******************66665555540555566777555555555699*** PP

        CRF1  99 lsLddlLntSeLded 113
                 l+L++lLn+SeLd+d
  CCD25166.1 770 LTLNELLNMSELDDD 784
                 *************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1085 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1826  (0.101846); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.58u 0.39s 00:00:01.97 Elapsed: 00:00:00.64
# Mc/sec: 5142.82
//
Query:       CCD25167.1  [L=241]
Description: hypothetical protein NDAI_0E03500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-41  140.3   3.3    2.9e-20   72.1   0.3    2.2  2  Lum_binding  Lumazine binding domain


Domain annotation for each model (and alignments):
>> Lum_binding  Lumazine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.3   1.6e-24   2.9e-20       1      87 []       3      95 ..       3      95 .. 0.78
   2 !   69.1   0.2   1.3e-23   2.3e-19       1      87 []     108     199 ..     108     199 .. 0.94

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.6e-24
                 -S--SEEEEEEEEE.EC........GCTTEETEES..GGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding  1 tGiVeevgtvesiekee........kledltielp..elakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlgelkvgdkVNlEra 87
                 tGiVe +gtv++ ++ +        +    ++ ++  +   + ++ Gdsia+nG+cLTV++ +ve+++f+v ++ eT++rt+++++k+++kVNlEra
   CCD25167.1  3 TGIVELIGTVQEYNEFDesssggqgV----SVVIKdaAPILKDCHIGDSIAINGICLTVTEFDVEAGTFKVGISLETIKRTNVSSWKPNSKVNLERA 95
                 8************4322455545441....4433433223334566*************987899******************************96 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 1.3e-23
                  -S--SEEEEEEEEE.ECGCTTEETEES......GGGGG..TTT-EEEETTEEEEEEEEEE.SSEEEEEEEHHHHHHSSGGG--TTSEEEEEEE CS
  Lum_binding   1 tGiVeevgtvesiekeekledltielp......elakylvekGdsiavnGvcLTVvteeveeeeftvdvipeTlerttlgelkvgdkVNlEra 87 
                  +G+V++v+ ++ ie+e+++ +++++l+      ++++y+vekG +i+++G++LTVv+ + ++  f++++i++T+e++ +  +  gd VN+E++
   CCD25167.1 108 QGHVDTVASIVGIEPEGNAVNYSFQLNqtnddkKYMNYIVEKG-FICIDGTSLTVVSVDDNNAIFSISMIKHTQENVIMPLKGLGDLVNIEVD 199
                  8************9999999999999999**************.***********96555599****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1727.16
//
Query:       CCD25168.1  [L=417]
Description: hypothetical protein NDAI_0E03510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-69  234.3  14.4      2e-69  233.9  14.4    1.2  1  Cut8      Cut8, nuclear proteasome tether protein


Domain annotation for each model (and alignments):
>> Cut8  Cut8, nuclear proteasome tether protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.9  14.4   1.1e-73     2e-69       2     239 ..      78     360 ..      77     362 .. 0.88

  Alignments for each domain:
  == domain 1  score: 233.9 bits;  conditional E-value: 1.1e-73
        Cut8   2 rkRkrlsledeeesqds............edetspskkkskpslssssk.............krsrtpk..isgqpLplsrlLetLdkeqLqsllqslv 73 
                 +kR+ +++ed+++++ s            +      k+  ++++s+  k             k+ +++   i++qpLp++r+Le++d++q+++ll++++
  CCD25168.1  78 SKRRLVDSEDASNENVStntsfsnlyargT------KQPLRYQYSK--KpsysaanntvtatKKISNTFnaIRSQPLPIQRCLELMDHQQVNDLLNDIL 168
                 8***********999987777764433331......2222222222..12233445566777777666569**************************** PP

        Cut8  74 e.ehpeleqevskka.....pkpsiesllelLkekkenilkslPyk.g.................dkeddyaYlRvkphLleFlncLsDfilnflppne 148
                 + ++p+l+q +++++     +++sie++  lLkek+enilk++Py+ +                   +ddya++R+k+++leFln L+Dfiln++ppn 
  CCD25168.1 169 NlNNPSLNQFIHTRInsnynSNFSIEKCSILLKEKFENILKNVPYNkNyynnaqasennnnnnntLLLDDYAFIRLKSFILEFLNSLIDFILNNIPPNF 267
                 *778******************************************736899**********998899******************************* PP

        Cut8 149 tnlstsLkfldeatklvhkLPnfdnqshnyykdkcyeqlsnawltvikeaakd..gggllkkleleeweekLkkhneesegklqkvlellksk 239
                 +n+++sL+fl+e+t +v +LP+f+ +s+nyy+dkc+eqls +w+t+i+e akd  +++l +k+ +++w +kL++hn++++g+++++l+l+k++
  CCD25168.1 268 NNVHESLNFLNECTLMVITLPRFQLPSNNYYYDKCIEQLSFIWSTIINELAKDlvMANLNDKEFYLNWLSKLENHNQRTGGMFNQPLKLFKHI 360
                 ******************************************************9888889*****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1068  (0.0595683); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3076.09
//
Query:       CCD25169.1  [L=111]
Description: hypothetical protein NDAI_0E03520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 852.23
//
Query:       CCD25170.1  [L=851]
Description: hypothetical protein NDAI_0E03530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2267  (0.126443); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 5882.37
//
Query:       CCD25171.1  [L=225]
Description: hypothetical protein NDAI_0E03540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-48  163.2   0.0    5.1e-48  162.5   0.0    1.4  1  Sedlin_N  Sedlin, N-terminal conserved region
    4.4e-05   23.4   0.5      0.006   16.5   0.1    2.5  3  Sybindin  Sybindin-like family


Domain annotation for each model (and alignments):
>> Sedlin_N  Sedlin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   0.0   5.7e-52   5.1e-48       1     131 []       7     222 ..       7     222 .. 0.98

  Alignments for each domain:
  == domain 1  score: 162.5 bits;  conditional E-value: 5.7e-52
    Sedlin_N   1 iigkkdnplyelefssskekeeke........lkeLnqfilhasLDivedlqwk............................................. 46 
                 iig++dnp+ye+ef++ ++k+ ++        lkeLn+filha+LD++edlqw+                                             
  CCD25171.1   7 IIGTQDNPIYEAEFTNPTSKNASSneggfpndLKELNPFILHAALDVIEDLQWQpnptvnnanggggigigyfnsntssnsslnstgflksrtslggnn 105
                 9**************998877666789************************************************************************ PP

    Sedlin_N  47 ..tnnlylgkvdkfeklsvsayvtnskikflllhes..............................ssskkkdekikqffqevhelyvktlmnPFykvn 113
                   ++n+ylgkvd+f++ls++ay+t+ ++kf+++h+                               ++++ +d++i++f+qevhely+k lmnPFy+ n
  CCD25171.1 106 saSDNCYLGKVDHFYGLSITAYLTYNGMKFVMIHGDasksntnekditfnyneeinsktsngnrnkAMVPLDDNAIRSFYQEVHELYIKALMNPFYNLN 204
                 ****************************************************************99999****************************** PP

    Sedlin_N 114 eeirSpaFdkkvkklakk 131
                 ++i+ ++Fd++v++lakk
  CCD25171.1 205 DPINDSSFDMRVRRLAKK 222
                 ****99**********97 PP

>> Sybindin  Sybindin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       0.4   3.6e+03      15      25 ..      16      26 ..       7      97 .. 0.59
   2 !    4.7   0.0    0.0029        26      77     100 ..     124     147 ..     105     162 .. 0.79
   3 !   16.5   0.1   6.7e-07     0.006      98     140 ..     179     220 ..     171     223 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.4
    Sybindin 15 yqkeaneekke 25
                y++e+++++++
  CCD25171.1 16 YEAEFTNPTSK 26
                44444444432 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0029
    Sybindin  77 LhclqtltGiKfvlitdtktnaea 100
                 +  + t  G+Kfv+i+ ++++ ++
  CCD25171.1 124 ITAYLTYNGMKFVMIHGDASKSNT 147
                 56678999*******988775443 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 6.7e-07
    Sybindin  98 aeadsllrkiyelYsdyvlknPfyslempircelFdeklkell 140
                 ++++s+ + + elY   +l nPfy+l+ pi    Fd ++++l 
  CCD25171.1 179 NAIRSFYQEVHELYIK-ALMNPFYNLNDPINDSSFDMRVRRLA 220
                 578899999*****98.678****************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 1886.68
//
Query:       CCD25172.1  [L=133]
Description: hypothetical protein NDAI_0E03550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-23   82.9   4.3    3.3e-23   81.9   4.3    1.5  1  Med22     Surfeit locus protein 5 subunit 22 of Mediator comp
  ------ inclusion threshold ------
       0.11   12.4   0.0       0.14   12.1   0.0    1.2  1  DUF2400   Protein of unknown function (DUF2400)


Domain annotation for each model (and alignments):
>> Med22  Surfeit locus protein 5 subunit 22 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   4.3   3.6e-27   3.3e-23       1     104 [.       8     127 ..       8     128 .. 0.87

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 3.6e-27
       Med22   1 erldddveslldnfreliklakv....................ndekqkeks.taaqeslemevraaqlvraiedLlkLtrelKelwiLndfpelneei 78 
                 e+ld++ve l+ +++eli+l+++                    +   q+++  +a+++++++  +++ql+r+++dLl +tr ++e+w+Ln++p+++ ++
  CCD25172.1   8 EKLDQTVELLSLKLAELIRLSSIdnpesandnidsgsmnsgmlE--AQDSNIaIATTSMTMVYGQTMQLIRGVQDLLVMTRGMREMWLLNQIPDQD-KQ 103
                 69*********************999999888888887766431..3333344669999999*********************************5.55 PP

       Med22  79 kdqeeeldeeneelsqllnnlreelt 104
                 +d+++ +++  eel++lln++++e++
  CCD25172.1 104 NDNARSINH--EELASLLNTCMQEII 127
                 5566*****..*************96 PP

>> DUF2400  Protein of unknown function (DUF2400)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.6e-05      0.14      12      85 ..      52     123 ..      44     133 .] 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.6e-05
     DUF2400  12 kediei.aallaallayGnrkqiikkleellelmdkspydfvleeeeekdlkelekfkyRffnsedllallkalk 85 
                  +d +i +a  + ++ yG+  q+i+ ++ ll ++    + ++l++  ++d+++ ++   R  n+e+l++ll+++ 
  CCD25172.1  52 AQDSNIaIATTSMTMVYGQTMQLIRGVQDLLVMTRGMREMWLLNQIPDQDKQN-DNA--RSINHEELASLLNTCM 123
                 4566551466777899**************99999999999998886666655.444..9999999999987653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1130.53
//
Query:       CCD25173.1  [L=306]
Description: hypothetical protein NDAI_0E03560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.1e-24   83.8   0.0    8.3e-24   82.8   0.0    1.5  1  Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
    6.2e-22   77.4   0.2    9.9e-22   76.7   0.2    1.3  1  Ribosomal_S5    Ribosomal protein S5, N-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   9.3e-28   8.3e-24       2      72 .]     221     292 ..     220     292 .. 0.96

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 9.3e-28
                     EEETTEEEEEEE--TT--EES-HHHHHHHHHHT--SEE---BS-SSHHHHHHHHHHHHH.HTTTT-.-GGGG CS
  Ribosomal_S5_C   2 gkfgavkvllkpaprGtGiiaggavravlelaGikDvlakslgsrnpinvvkAtfeALk.klrspeevaalR 72 
                     +++++vk++l+ a +G+G+++++++++++e+aGikD++ k+++srnp+n++k+++eAL+ ++++++e+a  R
      CCD25173.1 221 HRYHGVKLFLRNARPGFGLRVNHVIFEICECAGIKDLSGKIYKSRNPMNIAKGFLEALTeNQKTVDEIALGR 292
                     589*******************************************************989*******9776 PP

>> Ribosomal_S5  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.2   1.1e-25   9.9e-22       3      64 ..     145     207 ..     143     208 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.7 bits;  conditional E-value: 1.1e-25
                   EEEEEEEEEEEEETTEEEEEEEEEEEEEETTTEEEEEEEEE.SSHHHHHHHHHHHHHHTEEE- CS
  Ribosomal_S5   3 ekvlkikrvqkvtkgGrrtsfsalvvvGdgnGlvGlGvgka.kevatAirkAiekAkknlvpv 64 
                    k l++krv+++t++G++ s++ lvvvGd+nG+vGlG+gk+ + ++++i kA+++A++nl +v
    CCD25173.1 145 MKPLVMKRVSNQTRKGKIPSYYSLVVVGDKNGMVGLGEGKSrESMSKSIFKAHWDAVRNLKYV 207
                   689**************************************44566**************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.35
# Mc/sec: 2586.95
//
Query:       CCD25174.1  [L=252]
Description: hypothetical protein NDAI_0E03570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-13   50.5  12.7    6.1e-13   49.0  10.1    2.7  2  HMG_box    HMG (high mobility group) box
    0.00064   20.3   4.7     0.0018   18.9   4.7    1.7  1  HMG_box_2  HMG-box domain
  ------ inclusion threshold ------
      0.025   14.0   0.0      0.038   13.5   0.0    1.2  1  CBP_BcsQ   Cellulose biosynthesis protein BcsQ


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.31   1.8e+03       3      29 ..      86     112 ..      84     122 .. 0.84
   2 !   49.0  10.1     1e-16   6.1e-13       1      69 []     126     202 ..     126     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.31
                 SS--HHHHHHHHHHHHHHHHSTTS-HH CS
     HMG_box   3 RplsafflfskeqraklkaenPelkna 29 
                  p++ f++  ++q++ +   ++  kn+
  CCD25174.1  86 QPVTNFNVQQQDQQPIINDACSCKKNS 112
                 589999999999999999988877765 PP

  == domain 2  score: 49.0 bits;  conditional E-value: 1e-16
                 --SS--HHHHHHHHHHHHHH........HHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklk........aenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekpeyk 69 
                 ++Rp +af+lf+++ + +l+        +e +   n+++s+ +g++W++l++eeKk +++ a+kek+ ++k++p+yk
  CCD25174.1 126 IPRPRNAFILFRQHLHHTLFpkekemliKEGSFKANSQVSRDIGQRWRQLTDEEKKYWQDLAQKEKEWHKKKYPNYK 202
                 68***********9887654211111117777778*****************************************8 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   4.7   2.9e-07    0.0018       6      72 ..     128     201 ..     127     202 .. 0.77

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.9e-07
                 SS--HHHHHHHTTHHHHHHH........T---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH-SS-- CS
   HMG_box_2   6 aarnAYalfvqemipelkrk........GnpviglaevsklcsekWkalseeeKekYeekAkedkkrydrealty 72 
                 ++rnA++lf q    +l  k        G+     + vs+ ++++W++l +eeK+ +++ A++ k+  ++  ++y
  CCD25174.1 128 RPRNAFILFRQHLHHTLFPKekemlikeGS-FKANSQVSRDIGQRWRQLTDEEKKYWQDLAQKEKEWHKKKYPNY 201
                 578999999998887764332255554333.455689****************************9887776665 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.4e-06     0.038     154     192 ..     139     179 ..     130     214 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.4e-06
    CBP_BcsQ 154 rLhqqalpaaellLiNq..feaasqlqqDllqlWlqslrrl 192
                  Lh+  +p+++ +Li +  f+a+sq+ +D+ q W+q +++ 
  CCD25174.1 139 HLHHTLFPKEKEMLIKEgsFKANSQVSRDIGQRWRQLTDEE 179
                 69999**********8444****************987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2114.15
//
Query:       CCD25175.1  [L=782]
Description: hypothetical protein NDAI_0E03580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-68  230.5   0.0    1.4e-68  230.5   0.0    1.6  2  Peptidase_M41    Peptidase family M41
    8.7e-44  149.1   0.0    2.3e-43  147.8   0.0    1.8  1  AAA              ATPase family associated with various cellul
    3.6e-13   49.1   0.0    1.1e-12   47.5   0.0    1.8  1  AAA_lid_3        AAA+ lid domain
    1.4e-06   28.6   0.5    1.4e-06   28.6   0.5    2.3  2  FtsH_ext         FtsH Extracellular
    0.00039   20.4   0.0     0.0022   18.0   0.0    2.3  1  AAA_5            AAA domain (dynein-related subfamily)
     0.0043   16.3   1.0     0.0097   15.1   0.1    2.0  2  TIP49            TIP49 P-loop domain
     0.0051   16.6   0.0      0.011   15.5   0.0    1.5  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0076   16.5   0.9        0.7   10.2   0.1    3.0  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.049   13.4   0.0    2.0  1  IstB_IS21        IstB-like ATP binding protein
      0.038   14.1   2.1       0.14   12.2   0.0    2.8  3  AAA_2            AAA domain (Cdc48 subfamily)
      0.044   14.2   0.0      0.044   14.2   0.0    2.3  2  AAA_17           AAA domain
       0.17   12.1   0.0       0.57   10.3   0.0    1.9  1  AAA_33           AAA domain
        2.1    7.4   6.9        2.2    7.3   4.0    2.0  2  ABC2_membrane_3  ABC-2 family transporter protein
        3.1    7.1   8.2        2.3    7.5   0.5    2.7  2  IMD              IRSp53/MIM homology domain
        6.2    7.4   6.2        3.2    8.3   0.0    3.3  3  AAA_18           AAA domain


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.5        10   1.2e+04     129     141 ..      84      96 ..      71     112 .. 0.50
   2 !  230.5   0.0   1.2e-71   1.4e-68       1     190 [.     567     749 ..     567     750 .. 0.97

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 10
                    ------SS-HHHH CS
  Peptidase_M41 129 elkkekelseeta 141
                    + +++k++se+ +
     CCD25175.1  84 DNEQQKKYSEKEK 96 
                    3344444444332 PP

  == domain 2  score: 230.5 bits;  conditional E-value: 1.2e-71
                    XX--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS.-----------TSS--BHHHHHHHHHHHHHHHHHHHHHHHS-BGGGHHHHHHHH CS
  Peptidase_M41   1 rvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgq.alGltlslPeedklsltkeellarlavllGGraaEelifgevttGasnDlekat 95 
                    rv+s++ekk+vAyHEaGHa++g++lk adp+ Kv+iiPRgq alG++++lP ++ + +++e++++r++++lGGr++Eel+f +vt+Ga++D++k+t
     CCD25175.1 567 RVLSKEEKKTVAYHEAGHAVCGWFLKYADPLLKVSIIPRGQgALGYAQYLPPDQ-YLISEEQFQHRMIMALGGRVSEELHFPSVTSGAHDDFKKVT 661
                    689************************************************998.89*************************************** PP

                    HHHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHHH CS
  Peptidase_M41  96 kiarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeiee 190
                    ++a++mvt++Gms+k+G vs++++++       +++ +k++se+ta++id+evk++v+ a+++++++l+e+ e+++++a++Ll+kE +++e++ +
     CCD25175.1 662 QMANAMVTSLGMSKKVGYVSYDQRDS-------QFQVNKPFSEKTARNIDTEVKRIVDFAHNKCTQLLSENIEKVDKVAKELLRKEAITREDMIR 749
                    **********************9988.......36689******************************************************976 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.8   0.0     2e-46   2.3e-43       2     131 ..     344     477 ..     343     478 .. 0.97

  Alignments for each domain:
  == domain 1  score: 147.8 bits;  conditional E-value: 2e-46
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.....TTCCCHHHHHHHHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.....sgseseeeervvnqLlteldg 95 
                 +l+GppGtGKTllaka a e+gv+fl++sgse+++++vg +++++r+lf++a++ a psi+fiDEida++k+r      g++++e+e ++nqLl e+dg
  CCD25175.1 344 ILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEMFVGVGASRVRDLFEQARKLA-PSIIFIDEIDAIGKERgkggaLGGANDEREATLNQLLVEMDG 441
                 79*****************************************************9.*****************99988889***************** PP

                 TTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  96 vkkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 ++++++ v+vi+ tnrpd ldpallr gRfdr+i+i+
  CCD25175.1 442 FSTSDQ-VVVIAGTNRPDVLDPALLRpGRFDRHIQID 477
                 ***866.***************************986 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   9.2e-16   1.1e-12       6      44 ..     514     552 ..     506     553 .. 0.92

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 9.2e-16
   AAA_lid_3   6 eLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 +LA +T+G++GAD+a+ c+eAal A r++ + +t ++fe
  CCD25175.1 514 KLATLTPGFTGADIANACNEAALIAARHKDPFVTIQHFE 552
                 6888**********************************8 PP

>> FtsH_ext  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       7.3   8.7e+03      45      78 ..      69     105 ..      67     111 .. 0.53
   2 !   28.6   0.5   1.2e-09   1.4e-06       7     106 ..     124     229 ..     121     232 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.3
    FtsH_ext  45 ekvvvqestis...alirrptgdgvsttkkgnsttty 78 
                 +++ ++e+t +     + ++++ ++  +k+ +++t++
  CCD25175.1  69 SNILLNENTNEdknNDNEQQKKYSEKEKKDDSKKTSE 105
                 6666666666655533444555555555555555554 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.2e-09
    FtsH_ext   7 lallllllllslfg.gsgtgstkeisyseFl.edleqgnvekvvvqestis....alirrptgdgvsttkkgnstttystptlgsvesleekLeealks 99 
                 ++++ + +l++l   ++ ++  k++++++F  ++le g v+k++v +++      +  +  tg+  ++ +  n++++++ +t+gsv+ +ee+ ++ + +
  CCD25175.1 124 FLTIGFTILFNLMStSRDSNENKSLTFQDFKsNYLERGLVKKIYVINKYLVeaelHDQSIITGSQPNSMNPFNKHSNVVAFTIGSVDIFEEQMDQIQDE 222
                 33444444444443588889**********99**************999999999999999************************************** PP

    FtsH_ext 100 kgvdves 106
                 +++d+  
  CCD25175.1 223 LQIDPKD 229
                 ****976 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.8e-06    0.0022       3     136 ..     344     466 ..     342     467 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.8e-06
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HH..HHHHHHHHHHSSEEE.. CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraese..vlnsLlslleerrllle 97 
                 +L GppGtgK+ la+  a   + +++ v ++++ +    +g  ++           l ++ar   ++i+++DE++ + +e    ++L    +er+  l+
  CCD25175.1 344 ILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEMFVGVGASRV---------RDLFEQARklAPSIIFIDEIDAIGKErgKGGALGGANDEREATLN 433
                 89******************************9987777777776.........88888999899***********99661156899999999999988 PP

                 -SSSEEE---......-EEEEEESS--.-TT-TTHHHHT CS
       AAA_5  98 eggelvkaknddllerfrviatanpldrslnelspalrs 136
                 ++  +++  ++    ++ via +n++d     l+pal++
  CCD25175.1 434 QLLVEMDGFST--SDQVVVIAGTNRPD----VLDPALLR 466
                 88777766553..35599999999999....88888875 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   8.1e-06    0.0097      51      89 ..     341     377 ..     332     398 .. 0.89
   2 ?   -2.1   0.1       1.4   1.7e+03      69     105 ..     702     739 ..     693     748 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevy 89 
                 r+ +l+Gp+gtGkt la a + e g  vpf ++sgse+ 
  CCD25175.1 341 RGAILSGPPGTGKTLLAKATAGEAG--VPFLSVSGSEFV 377
                 78899*****************988..*********975 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.4
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX CS
       TIP49  69 aiskelgedvpfvalsgsevyslevkktevltqa.lrk 105
                  i  e+ + v f++ + +++ s +++k + + ++ lrk
  CCD25175.1 702 NIDTEVKRIVDFAHNKCTQLLSENIEKVDKVAKElLRK 739
                 56778888889999999999999999987665541455 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   9.4e-06     0.011      37      96 ..     344     411 ..     337     416 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.4e-06
      RuvB_N  37 llyGpPGlGkttlakiiakelgvklkitsgPvl.........ekagdlaalltnleekdvlfideihrl 96 
                 +l+GpPG Gkt lak  a e gv + + sg            ++ +dl     +l +  ++fidei  +
  CCD25175.1 344 ILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFvemfvgvgaSRVRDLFEQARKLAP-SIIFIDEIDAI 411
                 79**********************999998753111122222455666666666654.58999999765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00059       0.7       9      26 ..     344     361 ..     340     378 .. 0.85
   2 ?    3.5   0.0     0.068        81      83     130 ..     389     454 ..     382     458 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00059
      AAA_22   9 vvtGesGtGKTtllrrll 26 
                 ++ G++GtGKT+l++  +
  CCD25175.1 344 ILSGPPGTGKTLLAKATA 361
                 799***********9765 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.068
      AAA_22  83 eqalrarav..ielliiDEaqhlr..s.............eealeeL.rsllnl.srkgvqliLvGt 130
                 ++ ++++++  ++++ iDE++ +   +             e+ l++L +++    s+++  ++++Gt
  CCD25175.1 389 RDLFEQARKlaPSIIFIDEIDAIGkeRgkggalgganderEATLNQLlVEMD-GfSTSDQVVVIAGT 454
                 4444445555569*********976514455666666666666776623332.24666666666665 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   4.1e-05     0.049      49     116 ..     342     407 ..     289     417 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 4.1e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklaralkrllkvdllilDd 116
                 + +l Gp+G+GK+ la a + ea    lsv+     +++  + + r  + +++a  r l+++++ +D+
  CCD25175.1 342 GAILSGPPGTGKTLLAKATAGEAGVPFLSVSGSEFVEMFVGVGASRVRDLFEQA--RKLAPSIIFIDE 407
                 46899*************999998777777777777777777766666666543..334455555555 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.6       1.4   1.6e+03     128     166 ..      76     121 ..      62     123 .. 0.47
   2 ?   12.2   0.0   0.00012      0.14       7      84 ..     344     416 ..     341     447 .. 0.77
   3 ?   -2.8   0.0       5.1   6.1e+03      75      98 ..     727     750 ..     718     752 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.4
                 --TTHHHHTTTS-S.......TTTTSGGG--HHHHHHTT--HHHHT CS
       AAA_2 128 afgsskisdesrsk.......eeeeekkkeeveeelkkglipEllg 166
                 + + +k +d++++k       +++++k++ee ++   ++ + E+++
  CCD25175.1  76 NTNEDKNNDNEQQKkysekekKDDSKKTSEEYKSMADYFKSKEFMN 121
                 4555555554444455655433333333333333333333446665 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00012
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.....EEEEETGGG----.- CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.....ivllDEidKihpk.e 84 
                 +l gp g+Gkt+laka+a    v    ++  +  se+ e           +ga+     +e+       i+++DEid i ++ +
  CCD25175.1 344 ILSGPPGTGKTLLAKATAGEAGV----PFLSVSGSEFVE-------MFVGVGASRVRDLFEQARklapsIIFIDEIDAIGKErG 416
                 5789*****************98....************.......33345666666666666566678********9999641 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 5.1
                 ETGGG-------------HHHHHH CS
       AAA_2  75 DEidKihpkessgadvSregVqrd 98 
                 + +dK++++   ++ + re+  r+
  CCD25175.1 727 EKVDKVAKELLRKEAITREDMIRL 750
                 456777776556666667766665 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   3.7e-05     0.044       2      75 ..     347     421 ..     346     464 .. 0.82
   2 ?   -2.5   0.1       5.5   6.5e+03      44      63 ..     724     743 ..     716     747 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.7e-05
                 E-TTSSHHHHHHHHHHHHTEEEEEH.HHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEE CS
      AAA_17   2 GgPGsGKgtqceklvekygfthlsa.Gdllreeakrgglakardemrklpleekkelqkeaaekiaeeakkkgvl 75 
                 G+PG GK+ +++  + + g+++ls  G+ + e+    g+++ rd ++++ +     +    +++i +e++k+g+l
  CCD25175.1 347 GPPGTGKTLLAKATAGEAGVPFLSVsGSEFVEMFVGVGASRVRDLFEQARKLAPSIIFIDEIDAIGKERGKGGAL 421
                 9**********************988************9999999998766666666555566888887777665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 5.5
                 HHHCTSHHHHHHHHHHHHHH CS
      AAA_17  44 demrklpleekkelqkeaae 63 
                 ++++k++++ k+ l+kea+ 
  CCD25175.1 724 ENIEKVDKVAKELLRKEAIT 743
                 67888888889989888875 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00047      0.57       3      29 ..     344     370 ..     343     415 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00047
      AAA_33   3 llvGlpGsGKstlaerllkklgavlls 29 
                 +l G+pG+GK+ la+  + + g+ +ls
  CCD25175.1 344 ILSGPPGTGKTLLAKATAGEAGVPFLS 370
                 678*************99999944443 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.0    0.0019       2.2      98     181 ..      46     138 ..      30     151 .. 0.70
   2 ?    0.2   0.0      0.26   3.1e+02     294     318 ..     239     265 ..     186     279 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0019
  ABC2_membrane_3  98 satvtvlinssnlnsskailnalns.llqqlnasalv..lqseatstsaninvestqleeelsnvasf......lvgliliilifitasfiav 181
                      ++t++  i+s  ++ss++i+  +++ ll+++++++++  + ++++ ++++ + +s  ++ee +++a++      + +++l i ++i ++ +++
       CCD25175.1  46 NSTLNNKIYSRSFHSSPLIQFRISNiLLNENTNEDKNndNEQQKKYSEKEKKDDSKKTSEEYKSMADYfkskefMNTIFLTIGFTILFNLMST 138
                      6788888999999************99999998888788444444454554455555566666666665666635558888888888885554 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.26
  ABC2_membrane_3 294 psalkwifsiiPffapglgllrli..t 318
                      +s+l+++f ++P+  +  gl+ +   +
       CCD25175.1 239 ASFLQYLFPFLPTIILLGGLYFITkkM 265
                      356666666666666666666555443 PP

>> IMD  IRSp53/MIM homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.8     0.077        92      89     126 ..      73     108 ..      37     121 .. 0.63
   2 ?    7.5   0.5    0.0019       2.3      65     107 ..     698     740 ..     626     746 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.077
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         IMD  89 leekveedkkvlnqldkdyakEykkkraelkKkssell 126
                 l+e+++edk   n+ +k+y     +k+++ kK s e +
  CCD25175.1  73 LNENTNEDKNNDNEQQKKYSEK--EKKDDSKKTSEEYK 108
                 7899999999999999999753..33444445444444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0019
                 HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH CS
         IMD  65 erhRsieskLeelvkalhdsLlnpleekveedkkvlnqldkdy 107
                 ++ R+i+++++++v   h++  + l e++e+  kv+++l ++ 
  CCD25175.1 698 KTARNIDTEVKRIVDFAHNKCTQLLSENIEKVDKVAKELLRKE 740
                 478***********************************98875 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.9       3.6   4.3e+03      31      67 ..      71      98 ..      40     172 .. 0.57
   2 ?    0.1   0.1      0.92   1.1e+03       3      13 ..     282     292 ..     281     299 .. 0.89
   3 ?    8.3   0.0    0.0026       3.2       2      18 ..     344     360 ..     344     452 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.6
      AAA_18 31 vakenglllevdpealdeskrldedkldklldaleen 67
                ++ ++++ ++ +++          ++++k +++ ++ 
  CCD25175.1 71 ILLNENTNEDKNND---------NEQQKKYSEKEKKD 98
                33333333333333.........33333333322222 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.92
      AAA_18   3 ltGtpGvGKtt 13 
                 l G+ GvGK+ 
  CCD25175.1 282 LGGMFGVGKSR 292
                 89*******95 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0026
      AAA_18   2 lltGtpGvGKttlakeL 18 
                 +l+G+pG+GKt lak+ 
  CCD25175.1 344 ILSGPPGTGKTLLAKAT 360
                 699**********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1988  (0.110882); expected 358.6 (0.02)
Passed bias filter:                      903  (0.0503653); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.41
# Mc/sec: 5680.45
//
Query:       CCD25176.1  [L=313]
Description: hypothetical protein NDAI_0E03590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-15   55.9   0.7    3.6e-15   55.9   0.7    1.9  2  EB1            EB1-like C-terminal motif
    2.7e-05   24.3   0.5    5.9e-05   23.2   0.5    1.6  1  CH             Calponin homology (CH) domain
     0.0046   17.3   3.8     0.0046   17.3   3.8    1.6  2  zf-C4H2        Zinc finger-containing protein
  ------ inclusion threshold ------
      0.035   14.3   0.1      0.065   13.5   0.1    1.5  1  ATG16          Autophagy protein 16 (ATG16)
      0.039   13.7   0.3       0.09   12.6   0.3    1.6  1  DivIC          Septum formation initiator
      0.053   14.1   0.7       0.12   13.0   0.6    1.6  1  BST2           Bone marrow stromal antigen 2
      0.088   13.0   0.5       0.15   12.3   0.5    1.4  1  CENP-Q         CENP-Q, a CENPA-CAD centromere complex subunit
      0.099   13.0   0.0       0.18   12.2   0.0    1.4  1  HrpB7          Bacterial type III secretion protein (HrpB7)
       0.17   12.0   2.3       0.73   10.0   0.3    2.4  2  TolA_bind_tri  TolA binding protein trimerisation


Domain annotation for each model (and alignments):
>> EB1  EB1-like C-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       6.6   1.3e+04      18      37 ..     182     199 ..     181     199 .. 0.65
   2 !   55.9   0.7   1.8e-18   3.6e-15       1      41 []     211     261 ..     211     261 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 6.6
                 HHHHTT----HHHHHHHHHH CS
         EB1  18 lcqtepeleedlpivkkikk 37 
                 ++qt  el + +  v+k kk
  CCD25176.1 182 VLQT--ELSQAQGSVQKLKK 199
                 5666..66667777777765 PP

  == domain 2  score: 55.9 bits;  conditional E-value: 1.8e-18
                 HHHHHHHHHHHHHHHHHHHHH..........TT----HHHHHHHHHHHHS- CS
         EB1   1 LekERdFYFsKLRdIEilcqt..........epeleedlpivkkikkILYa 41 
                 Le+ER FYF+KLRdIE+l+q+          ++e+ + ++++ k+++ILYa
  CCD25176.1 211 LERERSFYFGKLRDIEVLVQStqdlikegvyKTETSDLDKFLSKVQQILYA 261
                 8*******************9**********99999999***********8 PP

>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.5   2.9e-08   5.9e-05       2      98 ..       6      99 ..       5     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.9e-08
                HHHHHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT...HHHHHHHHHHHHHHHHHHTTCHTTSS-HHHHHT...TSHHHH CS
          CH  2 eqkkellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnks...efkkleNinlaldvaekklgvpkvlieaedlve...gknksv 96
                e++ ell+W+n+ l+ + +k+      e + +G ++c+++++++ +  ++ +++++   e+++  N +  l+++  + +++k+   +e+l++    +n ++
  CCD25176.1  6 ESRSELLNWLNNILKLNYKKI------EECGTGAAYCQIMDSIYNDV-PMHRVKFNataEYDYQINYK-ILQSCFSRHRIEKTI-YVEKLMKcrfQDNLEF 97
                57899*********9987776......89**************9977.99999888999********9.8888999******99.9999999554444455 PP

                HH CS
          CH 97 lt 98
                l+
  CCD25176.1 98 LQ 99
                54 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.7   3.5e+03     134     134 ..     104     104 ..      52     154 .. 0.51
   2 !   17.3   3.8   2.3e-06    0.0046       8     117 ..     176     290 ..     171     308 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.7
     zf-C4H2 134 v 134
                 +
  CCD25176.1 104 F 104
                 1 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 2.3e-06
     zf-C4H2   8 ktleleklknklakevealekeekcleeykkelelLeqEkmaHveeLrlIhaDinalEsvikea.....eeekekslekakklyeeykklkeevnelrs 101
                   ++l  l+++l+++ ++++k +k + +yk++++ Le+E+     +Lr I+  +++  + ike       ++ +k l+k+++++   ++  e v+e  +
  CCD25176.1 176 SNEQLIVLQTELSQAQGSVQKLKKEIDTYKETVTILERERSFYFGKLRDIEVLVQSTQDLIKEGvykteTSDLDKFLSKVQQILYATEEGFEVVDEDEK 274
                 56789999*******************************************999999888887511111344455566666666666666666666555 PP

     zf-C4H2 102 elglekledleeeeee 117
                  +  e+ ++  ++e++
  CCD25176.1 275 GIAAEEQHNSGQSEND 290
                 5555555554445544 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   3.3e-05     0.065      97     158 ..     173     234 ..     106     239 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.3e-05
       ATG16  97 rgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqD 158
                 r  ++++l+ l++el++ + + ++ +++++  +++++ le++++    +lr+ e lvq  qD
  CCD25176.1 173 RRVSNEQLIVLQTELSQAQGSVQKLKKEIDTYKETVTILERERSFYFGKLRDIEVLVQSTQD 234
                 5567899***************************************************9999 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   4.5e-05      0.09      23      67 ..     177     219 ..     170     230 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.5e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXXXXXXXX CS
       DivIC  23 kqeiaalqaelaklkaeneeLeaevkdLksdedyieerARselgl 67 
                 ++++  lq el + +   ++L++e++ + ++   i er R  +++
  CCD25176.1 177 NEQLIVLQTELSQAQGSVQKLKKEIDTY-KETVTILERER-SFYF 219
                 89999***********************.69999999988.6666 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.6   5.9e-05      0.12      21      52 ..     182     213 ..     167     238 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 5.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  21 lLerqLtqaqeslreaeaqaatcnqtvvtLka 52 
                  L+ +L qaq s+++ ++++ t+++tv  L+ 
  CCD25176.1 182 VLQTELSQAQGSVQKLKKEIDTYKETVTILER 213
                 59*************************99875 PP

>> CENP-Q  CENP-Q, a CENPA-CAD centromere complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.5   7.3e-05      0.15      42     103 ..     174     238 ..     162     290 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.3e-05
      CENP-Q  42 spelhslelLeaeiekeeralerdyeaLreLeknakaearerke...klkkehvllqesdseels 103
                 + ++++l  L+ e+++++   ++ ++++ + ++++ +++rer     kl+  +vl+q+ ++  ++
  CCD25176.1 174 RVSNEQLIVLQTELSQAQGSVQKLKKEIDTYKETVTILERERSFyfgKLRDIEVLVQSTQDLIKE 238
                 56789999*********************************998899999999999944333222 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   8.9e-05      0.18      68     129 ..     160     221 ..     149     239 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.9e-05
       HrpB7  68 pfsiadylacrayrdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrer 129
                 p+++   +++ + r v ++++ +++ el +a++ +++ ++++ + ++++  ++++   +  +
  CCD25176.1 160 PIVASRSASLGMNRRVSNEQLIVLQTELSQAQGSVQKLKKEIDTYKETVTILERERSFYFGK 221
                 6899999999999*********************************9998777765555555 PP

>> TolA_bind_tri  TolA binding protein trimerisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00036      0.73      14      59 ..     176     218 ..     168     221 .. 0.69
   2 ?    1.1   0.1      0.22   4.3e+02      24      45 ..     279     300 ..     247     307 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00036
  TolA_bind_tri  14 earsqlllelqqqlealqqelreLRGqiEelqyqleqleerQrdlY 59 
                    ++  + l+ lq++l++ q  +++L+ +i+  +    +++er r +Y
     CCD25176.1 176 SN--EQLIVLQTELSQAQGSVQKLKKEIDTYKET-VTILERERSFY 218
                    45..677777777777777777777777766544.46777888887 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.22
  TolA_bind_tri  24 qqqlealqqelreLRGqiEelq 45 
                     +q ++ q+e +  +G++E+ +
     CCD25176.1 279 EEQHNSGQSENDIVNGSNERVE 300
                    678888999*********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1271  (0.0708907); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2248.80
//
Query:       CCD25177.1  [L=750]
Description: hypothetical protein NDAI_0E03600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-74  250.1   0.0      4e-74  249.7   0.0    1.1  1  AMP-binding  AMP-binding enzyme


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.7   0.0   2.2e-78     4e-74      17     422 ..     131     602 ..     115     603 .. 0.80

  Alignments for each domain:
  == domain 1  score: 249.7 bits;  conditional E-value: 2.2e-78
                  CCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-E.......EEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEEETCTCCC CS
  AMP-binding  17 sgegqtlTYreldervnrlAagLr.slGvkkgdr.......VaillpnspewvvallailkaGavvvplnptltaeelayiledseakvliatvdsel 106
                  s+++ + +Y+ +++r++++++gL+   + k+g+        V il++n+pew++a++a++ ++++   l+ tl++++ +yi++ +e+ vli    + +
   CCD25177.1 131 SNQYYWESYQTVNDRSQAFGSGLLsLVNTKRGKPlrsndfiVSILSHNTPEWIIADFACQAYSLTNTALYETLGPQTSEYIMNLTESPVLI--FAKSN 226
                  56899*******************66799**9999999999**************************************************..77777 PP

                  HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.....................-TSCCCS-BTTSEEEEEEE--SSSS-EEEEEEHHH CS
  AMP-binding 107 leklleaaakleavklvivldadellkeeelkeeeeseekae.....................kpeeeeelkpddlayiiYTSGTTGkPKGVmlshrn 183
                  + ++l++ +k ++  + i++++   ++ + ++++  s +  e                     ++ +  +++pd++++i +TSGTTG PKGV +++rn
   CCD25177.1 227 IYNILRILPKFKHLNTLICTEDLTKEELSLFNTSLLSIS--EnsknekismfslkqvetigklNQIPLIPPNPDSVYTISFTSGTTGLPKGVEMTQRN 322
                  788888888877777777776444443333333332222..124566788999999*******55567799*************************** PP

                  HHHHHHHHH...HHHC.SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHH.......HHC CS
  AMP-binding 184 lvanvaslk...letr.fklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleal.......les 270
                  +++ +a  +   +++   k +++   +++lplahif+  + + + l++G  +++l++    dp++l+e+++ lk+  ia+vPr+l ++       l++
   CCD25177.1 323 ITSGIAF-SmstFYKVvAKRGQQLHDICFLPLAHIFER-MLIAWDLSQGVGLGFLHQP---DPTVLVEDLKILKPDAIALVPRILTRFeagiknsLDK 415
                  *887554.423422223222233344***********6.***************9944...57889**********************8886655443 PP

                  CCHHCHHHHC..........................................CGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEE CS
  AMP-binding 271 galkaakkak..........................................dlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtv 326
                  ++++     k                                           l+   ++++g +p+s+++l f+r+ +   v +gYGlTE  + ++ 
   CCD25177.1 416 STFQ-----KnvannildskvsrftsrggpdkslmnflvfhrvlidkirtslGLNNASYIVTGSAPISKDTLLFLRSALDIGVRQGYGLTESFAGIC- 507
                  3333.....1223345555566666666666666666666666555555555444566699******************999**************9. PP

                  CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE.TTSEEEEEEEETTS-SEBTT-HHHHHHHEEETCCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 327 lpleedkkklgsvGkplpgvevkivDeetgepvp.dgeeGellvrgpgvmkgYlkkpeataeafdsegrwlrTGDlgrldedGyleivgRkkdlikl 422
                  l  e +++ +gs+G +   +e+++    ++++ + ++ +Gell+rgp++++ Y+k+pe+t++a+d +++w+ TGD+g++d +G+l+i++R k+ +kl
   CCD25177.1 508 LS-EPHERDVGSCGAIGISAECRLRSVPEMGYDAaKDLKGELLLRGPQIFSKYFKNPEETSKAID-SNGWFATGDIGFIDGKGRLHIIDRVKNFFKL 602
                  66.4444789******99*******99999998625566*************************9.657*************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       405  (0.0225891); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 5480.67
//
Query:       CCD25178.1  [L=543]
Description: hypothetical protein NDAI_0E03610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-13   50.7   0.0    2.1e-13   50.4   0.0    1.1  1  Amino_oxidase  Flavin containing amine oxidoreductase
    6.2e-11   42.4   0.0    1.6e-10   41.1   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    4.9e-05   23.8   1.7     0.0077   16.8   0.1    2.7  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0098   15.5   0.0      0.016   14.8   0.0    1.3  1  DAO            FAD dependent oxidoreductase
  ------ inclusion threshold ------
       0.01   15.1   0.1       0.23   10.7   0.0    2.2  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
      0.017   15.1   0.0      0.037   14.0   0.0    1.5  1  NAD_binding_9  FAD-NAD(P)-binding
       0.02   14.2   0.0      0.035   13.3   0.0    1.3  1  Thi4           Thi4 family


Domain annotation for each model (and alignments):
>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   8.3e-17   2.1e-13       2     282 ..      22     346 ..      21     389 .. 0.83

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 8.3e-17
                    HHHHHHHHHHHTT..EEEEEEESSSSSBTTS-EEEET.....TEEEESS--EEET...TTHHHHHHHHHTTCCCCEE.EESCCGCEEEEETTEECC CS
  Amino_oxidase   2 aGLaaArqLlsaG..fdVtvlEardrvGGRirtvrsd.....GylielGamwftg...agnpllellkelgledsls.lpdpgapkrvlskggref 86 
                    +GL+  + L+      ++t++E++ r+GG+i++++       ++ +e G+ +++g   +   +   +++lg +ds + + ++++++r+       f
     CCD25178.1  22 SGLMFTYFLSKLRsdIKITLFEGEKRTGGWINSWNTAdqngaSVMLERGPRTLRGvsdGTVVIMDTMNDLGKSDSIRcVEKYATANRK-------F 110
                    77777777844444599********************998777*************999999999******99998844444433333.......2 PP

                    ....TTEECHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH.HHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT CS
  Amino_oxidase  87 ....pgdlspvpaewealleqgalsaellsleeklrlgleall.qktldeldldskslaesleelgrrepgdvevwdrliepelfaklefasglfa 177
                        + +l +vp+ + ++l+        +  ++ l++gl   +  +++++     ++++  +  l+rr   d  + ++l+         + +g++a
     CCD25178.1 111 llgpNDKLVQVPNSFGSFLK--------FA-TSPLSKGLFTGIaGEMFRKSSSTPGKDESVRTMLNRRYGND-FIASNLMSA-------IYHGIYA 189
                    2455999999**********........22.33344444444435556666666666666666666666666.999999997.......******* PP

                    STTTTCBHHHHTCCCCHHHHHTSCCCEE...................................................TTHTHHHHHHHHH...T CS
  Amino_oxidase 178 gdpselsaklalpllwelegfggslllp...................................................rgGlsqlpealae...e 219
                     d+s lsa  +  +++ +e ++gs+l++                                                    gGl++ p+++ +    
     CCD25178.1 190 DDISTLSAQKTSGKVFYTELKHGSVLRGsikeyirnrfgkkqpetlsgclklyqrafnkdtgallklsnhlkkypmlgfVGGLETFPKTIRKeldN 285
                    ************************************************************************************************ PP

                    TTTEEEETSEEEEEEEE..ETTCEEEEETTSTEE.EESEEEE-S-HHHHHSSEEESCC.SHHHHHHH CS
  Amino_oxidase 220 lrgldirlntrVkeikr..egdgvtvtledgevv.eaDaVvvTvplgvlkailfsPpl.pdekaeai 282
                    +r+++i +++ V+++ +   +++ +v+l++ e +  +D+  +Tv +  l+       l      + i
     CCD25178.1 286 IRNVEIVTGSAVTKMYKdsKNSTMSVKLSTNERIdGFDHLRITVTPQILS------TLiTSTYGDLI 346
                    *****************7666669999999999999*************9......44444444444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   6.2e-14   1.6e-10       1      58 [.      16      80 ..      16      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 6.2e-14
                   EE--SHHHHHHHHHHHCC..TEEEEEE-SSSSSSGGG-EECE...TT..CEECTS---EEETTHH CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka..gfdvlllekrdrlGGraasyev...pg..vrvdygahifhgsgyy 58
                   +vG+G+sGl + y+L+k   +++++l+e   r+GG++ s++    +g  v ++ g+++++g+++ 
     CCD25178.1 16 VVGGGVSGLMFTYFLSKLrsDIKITLFEGEKRTGGWINSWNTadqNGasVMLERGPRTLRGVSDG 80
                   8***************955699******************887654499***********99765 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     3e-06    0.0077       1      35 [.      13      49 ..      13      88 .. 0.69
   2 !    5.6   0.1    0.0095        24      43      79 ..     276     314 ..     272     321 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 3e-06
                EEEEECSSHHHHHHHHHHHHTTS..EEEEEESSSSSS CS
   Pyr_redox  1 kvvvvGgGyiglElAgalaelgk..kVtvversdkll 35
                kv vvGgG++gl++  +l++l++  k+t++e +++  
  CCD25178.1 13 KVGVVGGGVSGLMFTYFLSKLRSdiKITLFEGEKRTG 49
                688*******************833557777666655 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0095
                 HHHHHHHHHHT.TEEEECSEEEEEEEEETTS.EEEEEEE CS
   Pyr_redox  43 skilqeklekn.gievllntkveeiegsedg.vesvklk 79 
                  k ++++l +  ++e+++++ v+++ +++++   svkl+
  CCD25178.1 276 PKTIRKELDNIrNVEIVTGSAVTKMYKDSKNsTMSVKLS 314
                 567778887767******************988899986 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.3e-06     0.016       2      39 ..      14      56 ..      13      79 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 6.3e-06
                EEEECTSHHHHHHHHHHHHTT....EEEEESSSSTT.SSGGGS CS
         DAO  2 vviiGGGiiGlstAyeLarrg....Vtllekgdiag.sgaSgr 39
                v ++GGG+ Gl   y+L++      +tl+e +++ g +  S++
  CCD25178.1 14 VGVVGGGVSGLMFTYFLSKLRsdikITLFEGEKRTGgWINSWN 56
                78***************96533799*****9966552445554 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     9e-05      0.23     143     175 ..      12      46 ..       3      83 .. 0.74
   2 ?    1.9   0.0     0.041     1e+02     188     227 ..     278     320 ..     270     328 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9e-05
                  SEEEEES-SHHHHHHHHHHHHHT-..EEEEEESSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
  Pyr_redox_2 143 krivvvGgGyiGvElAaalaklgk..evtlveard 175
                  +++ vvGgG+ G+ ++ +l+kl +  ++tl e  +
   CCD25178.1  12 AKVGVVGGGVSGLMFTYFLSKLRSdiKITLFEGEK 46 
                  77888999999999999998887734455555544 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.041
                  HHHHHHHHT.TEEEEESCEEEEEEETTE..EEEEEETTSCEEE CS
                  xxxxxxxxx.xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxx RF
  Pyr_redox_2 188 aleealeke.Gvevklgtsvkeidgnge..klevvledgeeid 227
                  +++++l +  +ve+++g+ v+++ ++++   ++v+l+++e+id
   CCD25178.1 278 TIRKELDNIrNVEIVTGSAVTKMYKDSKnsTMSVKLSTNERID 320
                  44555555449***************99654448888877765 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.4e-05     0.037       2      41 ..      16      52 ..      15      65 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
  NAD_binding_9  2 ivGaGprGlavlerLlarakkkspleitlfdpsep.gagrv 41
                   +vG+G++Gl+++  L +    +s+++itlf+ ++  g g++
     CCD25178.1 16 VVGGGVSGLMFTYFLSKL---RSDIKITLFEGEKRtG-GWI 52
                   8************99999...6*********955535.654 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.4e-05     0.035      19      56 ..      13      51 ..      10      79 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.4e-05
                EEEEE--SHHHHHHHHHHHHC.TTS-EEEEESSSS--TT CS
        Thi4 19 DvvivGaGssGLtaayylakk.pdlkvailersvspGGG 56
                 v +vG+G sGL  +y l+k   d+k++++e +   GG 
  CCD25178.1 13 KVGVVGGGVSGLMFTYFLSKLrSDIKITLFEGEKRTGGW 51
                5789****************989********99999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4014.15
//
Query:       CCD25179.1  [L=1058]
Description: hypothetical protein NDAI_0E03620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-22   79.9   0.0      5e-22   78.2   0.0    1.9  1  HA2              Helicase associated domain (HA2)
    4.3e-18   65.5   0.0      9e-18   64.4   0.0    1.5  1  OB_NTP_bind      Oligonucleotide/oligosaccharide-binding (OB)
    1.2e-14   54.4   0.4    2.9e-14   53.1   0.4    1.7  1  S1               S1 RNA binding domain
    4.5e-13   49.5   0.0    1.5e-12   47.8   0.0    2.0  1  Helicase_C       Helicase conserved C-terminal domain
    1.4e-06   28.2   0.2    3.3e-06   27.0   0.2    1.6  1  DEAD             DEAD/DEAH box helicase
    3.2e-06   27.4   0.1    8.7e-06   26.0   0.1    1.7  1  AAA_22           AAA domain
      8e-05   22.4   0.1    0.00015   21.6   0.1    1.3  1  AAA_30           AAA domain
    0.00085   19.9   6.0       0.23   11.9   0.1    3.8  3  ABC_tran         ABC transporter
     0.0027   16.8   0.0     0.0098   15.0   0.0    1.9  2  T2SSE            Type II/IV secretion system protein
     0.0094   16.0   0.2       0.15   12.1   0.2    2.6  1  AAA_14           AAA domain
  ------ inclusion threshold ------
      0.011   15.4   0.1      0.027   14.1   0.1    1.7  1  SRP54            SRP54-type protein, GTPase domain
      0.011   16.0   0.1      0.024   15.0   0.1    1.5  1  AAA_19           AAA domain
      0.037   13.5   0.0      0.086   12.3   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
      0.045   13.9   0.0       0.15   12.2   0.0    1.9  2  Sigma54_activ_2  Sigma-54 interaction domain
      0.051   14.1   4.0       0.74   10.3   0.0    2.9  2  AAA_23           AAA domain
       0.11   11.9   0.0       0.31   10.4   0.0    1.7  1  PhoH             PhoH-like protein


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   4.4e-25     5e-22       1     108 []     788     876 ..     788     909 .. 0.87

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 4.4e-25
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrklahk 99 
                 Al  L++l+AL++eg lT+lG +m+++P++p+l++ Ll ++++  +c de+iti+A+lsv+++f +++ ++++ ++      k         ++++ h+
  CCD25179.1 788 ALDELYNLEALNNEGLLTKLGMRMSQFPMDPTLSRALLSSVTN--NCSDETITIIAMLSVQNVFSRPKGKQQDADN------K---------KARFHHP 869
                 7899************************************555..*******************999976543322......3.........3344444 PP

         HA2 100 daegDhltl 108
                    gDhltl
  CCD25179.1 870 Y--GDHLTL 876
                 4..999886 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   8.1e-21     9e-18       1      83 []     934    1011 ..     934    1011 .. 0.94

  Alignments for each domain:
  == domain 1  score: 64.4 bits;  conditional E-value: 8.1e-21
                   HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTTT CS
  OB_NTP_bind    1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfagqi 83  
                   +r+ l+ G++++ a++d +  +ykt +++t v ihpsS l      ke+e+v+y++lv ttk y+ ++t i+p wL+++a+++
   CCD25179.1  934 IRRTLVNGFFMNAAKRDSQV-GYKTITGGTVVGIHPSSSLYG----KEYEYVIYHSLVLTTKEYMSQVTSIEPSWLVELAPHY 1011
                   78999*********666555.5*******************8....**********************************986 PP

>> S1  S1 RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.4   2.6e-17   2.9e-14       3      75 .]      98     172 ..      96     172 .. 0.92

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 2.6e-17
                 TTTCEEEEEEEEEETTEEEEEET....TTEEEEEEGGGSSSSCEESCHHHCEETTEEEEEEEEEEETTTTEEEEEEC CS
          S1   3 ekgevveGeVtsvtkgGafVelg....ngvegfvpaselsrdarvedpdevlkvGdevkvkvlkvdkdrrriilsik 75 
                 + ++++ G+V ++t +G fVe++     + +g+v++sels++ rv+dp+ev+ +G+ v+vkv+k+ ++ r i+ls+k
  CCD25179.1  98 RLHKIYRGKVRKITTFGCFVEILgvqmKDCDGLVHISELSDH-RVKDPYEVVGEGQYVYVKVIKIQRNGR-ISLSMK 172
                 66889*****************976566679*********99.*************************88.****97 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   1.3e-15   1.5e-12      11     111 .]     599     726 ..     583     726 .. 0.86

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.3e-15
                 HHTTTTSEEEEEESSHHHHHH.HHHHHHHT........TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS....SS CS
  Helicase_C  11 kleeeggkilifvntidrlek.vklllekk........gikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp....rn 96 
                 + +   g+il+f++ +++++  +++l e+         ++ ++++++ lp++ + +i+e   kg+++v+ at++ae++i+i+++ +Vi+ ++     +n
  CCD25179.1 599 HINDGPGDILVFLTGQEEIDAcCEMLYERVktlgdaidDLLILPVYSALPSEIQSKIFEPTPKGSRKVVFATNIAETSITIDGIFYVIDPGFAkintYN 697
                 45677899*********9988877774444566677889*****************************************************9765544 PP

                 H..............HHHHHHHTTSSSTT CS
  Helicase_C  97 v..............tsyiqriGRtgRag 111
                 +              ++++qr+GR+gR g
  CCD25179.1 698 PraameqlivspisqAQANQRKGRAGRTG 726
                 488999999999999************86 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.2   2.9e-09   3.3e-06       5     170 ..     403     552 ..     399     558 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2.9e-09
                 HHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   5 aeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvg 103
                 +e ++++ +++ +++ +eTGsGKT+     + ++ +    +++  + +  P r  a  +++++ +    ++l ++  +g  + r + ++  ++++i ++
  CCD25179.1 403 SELVEAVQKNQFLVIVGETGSGKTTQITQYLNEEGF----SNHGIIGCTQPRRVAAVSVAKRVAEEVG-CKLGEE--VG-YTIRFEDRTS-RNTQIKYM 492
                 56677778888899**********997777665554....3444666899*******99999987777.444444..33.3344444444.669***** PP

                 EHHHHHH.HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 104 tpgrldd.llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                 t g+l++  l + k  +s+ +++ lDEa++       d + ++l++ +        + +viv SATl+
  CCD25179.1 493 TDGMLQReCLLDSK--MSKYSVIMLDEAHERTVA--TDVLFALLKKAAIERP----DLRVIVTSATLN 552
                 *******5446777..**************9997..8888888888843333....344********8 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   7.8e-09   8.7e-06       4     112 ..     411     532 ..     407     548 .. 0.74

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 7.8e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka.............erlsseell.ealeqalra 88 
                 + ++lv++Ge+G+GKTt + ++l++          + +++ +t p      ++++++++++g +l +             ++ + + +   +l++ +  
  CCD25179.1 411 KNQFLVIVGETGSGKTTQITQYLNEEGF------SNHGIIGCTQPRRVAAVSVAKRVAEEVGCKLGEevgytirfedrtsRNTQIKYMTdGMLQRECLL 503
                 679*********************9732......4777777777777799999999999999888889999****977765555555555566665544 PP

      AAA_22  89 rav...ielliiDEaqhlr..seealeeL 112
                  ++    +++++DEa+  +  ++ ++  L
  CCD25179.1 504 DSKmskYSVIMLDEAHERTvaTDVLFALL 532
                 4447899*********8533335555554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   1.3e-07   0.00015      14     115 ..     409     538 ..     402     548 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.3e-07
      AAA_30  14 ltsgdrvavltGpAGtGKttalkal..reaweaag.......grviglAptgkaAkvLaeelgieastiakllkrlk...................gra 84 
                 ++++ ++ v++G  G+GKtt ++++  +e + ++g       +rv++++  +++A++++ +lg e   + ++ +r+                    +  
  CCD25179.1 409 VQKN-QFLVIVGETGSGKTTQITQYlnEEGFSNHGiigctqpRRVAAVSVAKRVAEEVGCKLGEEVGYTIRFEDRTSrntqikymtdgmlqrecllD-S 505
                 3344.59*************9999877777888889********************99977776554444555444455567777789999999974.5 PP

      AAA_30  85 rlepgtllivDEag..mvdtkqlaallkaaeka 115
                 ++++ ++++ DEa    v+t+ l allk+a+ +
  CCD25179.1 506 KMSKYSVIMLDEAHerTVATDVLFALLKKAAIE 538
                 78888********73367999999999998754 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.5      0.88   9.9e+02      60     117 ..     333     387 ..     256     391 .. 0.68
   2 !   11.9   0.1   0.00021      0.23       8      29 ..     409     430 ..     404     467 .. 0.85
   3 !    7.9   0.0    0.0038       4.3      99     135 ..     481     518 ..     454     520 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.88
                 CEEEE-SS--S-TTSBHHHH...............HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  60 eigvlpqepqlfpeltvren...............esdeeiekalsklglkelkdtvvksspssLSgGqkqrv 117
                 ei+                +                 +eei+ ++++l  +e++ +++   ++++S+G++  +
  CCD25179.1 333 EIEQ---------------EirkmkvfddptssseRGKEEIDMLRKQLVVTEWERSRM---KEQISYGKRTSM 387
                 2222...............123333333354433366777999999999999999998...689999998766 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00021
                 EETTSEEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   8 lkegekvaivGenGaGKStLlk 29 
                 +++++ ++ivGe+G+GK+t + 
  CCD25179.1 409 VQKNQFLVIVGETGSGKTTQIT 430
                 78999**************664 PP

  == domain 3  score: 7.9 bits;  conditional E-value: 0.0038
                 CBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEEST CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  99 dtvvkssp.ssLSgGqkqrvalarallkkpkllllDEp 135
                 d++ ++ + + +  G+ qr +l  + ++k ++++lDE+
  CCD25179.1 481 DRTSRNTQiKYMTDGMLQRECLLDSKMSKYSVIMLDEA 518
                 33332222499**************************8 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.7e-06    0.0098     116     152 ..     399     435 ..     319     450 .. 0.81
   2 ?   -2.3   0.0       1.6   1.8e+03     135     154 ..     722     741 ..     690     745 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 8.7e-06
       T2SSE 116 ekiaevlrkavrerglilvsGgTgsGKttllyallke 152
                  k+++ l +av++++ +++ G TgsGKtt +   l+e
  CCD25179.1 399 YKMRSELVEAVQKNQFLVIVGETGSGKTTQITQYLNE 435
                 5778889999*******************99887765 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.6
       T2SSE 135 sGgTgsGKttllyallkein 154
                 +G Tg GK   ly+  ++ n
  CCD25179.1 722 AGRTGPGKCYRLYTETAFYN 741
                 799**********9988766 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   0.00014      0.15       2     100 ..     412     549 ..     411     560 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00014
      AAA_14   2 rkilvitGaRrvGKTtllkqlikell.........vkkesilyinldderd...................kkladpekllelilek.lke......... 62 
                 ++ lvi+G   +GKTt + q+++e+          ++++++  +++ +                      ++++++   ++++ +  l +         
  CCD25179.1 412 NQFLVIVGETGSGKTTQITQYLNEEGfsnhgiigcTQPRRVAAVSVAKRVAeevgcklgeevgytirfedRTSRNT--QIKYMTDGmL-Qreclldskm 507
                 67899****************9999878888888877777777777775557788888888887766544222222..2222222211.1244555666 PP

      AAA_14  63 ekktylflDEiqevpewekalkslvd....egknldvivtGS 100
                 +k ++++lDE++e + + ++l  l++    e+++l+vivt  
  CCD25179.1 508 SKYSVIMLDEAHERTVATDVLFALLKkaaiERPDLRVIVTSA 549
                 77888********97777777666663333668999999975 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.1   2.4e-05     0.027       3     130 ..     414     556 ..     412     570 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.4e-05
                 EEEEEESTTSSHHHHHHHHHHHHHHT..TS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEE..........SSTTSCHHHHHHHHHHH......HHHTT CS
       SRP54   3 villvGlqGaGKTttlaKLaallkke..gkkvllvaaDtfRaaAveQLktlaeklgvpvik..........kkeeadpaavakeavek......akeek 83 
                  +++vG +G+GKTt ++   ++l++e   ++ ++ ++   R+aAv   k +ae++g ++ +          +++ + +++++ +++ +       k +k
  CCD25179.1 414 FLVIVGETGSGKTTQIT---QYLNEEgfSNHGIIGCTQPRRVAAVSVAKRVAEEVGCKLGEevgytirfedRTSRNTQIKYMTDGMLQreclldSKMSK 509
                 5799**********987...5777774455668999999***************998876666666666543334455555555543311111157778 PP

                 SSEEEEEE--SSTTHHHHHHHHHHHHHHHSSSEEEEEEETTBHTHHH CS
       SRP54  84 idvvlvDTaGrlqndkelmeelkkikkvvkpdevllvldattgqeav 130
                 + v+++D a      ++++  l k + + +pd  ++v +at+ ++ +
  CCD25179.1 510 YSVIMLDEAHERTVATDVLFALLKKAAIERPDLRVIVTSATLNSARF 556
                 88888888888888888888888888888888888888888876655 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.1   2.1e-05     0.024       7     124 ..     409     534 ..     403     546 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-05
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallve.....lggvkpeeillvaftgrAakelrerlaalgae.atTiH...rlalldfddlltealelle.eae 95 
                   k++ l++++  G+GKT+ +++ +++        +g  +p+++++v++++r a+e+  +l   g+e  +Ti    r     +++++ ++ ++l+ e  
  CCD25179.1 409 VQKNQFLVIVGETGSGKTTQITQYLNEEGFsnhgiIGCTQPRRVAAVSVAKRVAEEVGCKL---GEEvGYTIRfedRT--SRNTQIKYMTDGMLQrECL 502
                 36788999999********998877653320001133345699999999999999999888...44445666521122..3344444445555556445 PP

      AAA_19  96 eekklqeee.llivDEfqdvd...elqyrLlka 124
                  ++k+ +++ +++ DE+ + +   ++ ++Llk+
  CCD25179.1 503 LDSKM-SKYsVIMLDEAHERTvatDVLFALLKK 534
                 56777.445599999997644114455555555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   7.7e-05     0.086      29      56 ..     408     435 ..     398     457 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.7e-05
       AAA_7  29 llknkkpvllvGptGtGKtviikdllkk 56 
                  +++++ +++vG+tG+GKt+ i+++l++
  CCD25179.1 408 AVQKNQFLVIVGETGSGKTTQITQYLNE 435
                 678889999***************9987 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00014      0.15       3      54 ..     394     446 ..     393     465 .. 0.83
   2 ?   -3.4   0.0       8.5   9.5e+03      29      64 ..     660     695 ..     652     720 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00014
                      --HHHHHHHHHHHHHHT-SS-EEEEEETT--HHH.HHHCC--TTS-EE--SST CS
  Sigma54_activ_2   3 asaaiqelkerLeqaaqsklpvfltGekGsgkel.vArlLhknsgpwleifvv 54 
                      +s ++ +++++L +a+q++  + ++Ge Gsgk++ + ++L +++  +  i  +
       CCD25179.1 394 KSLPVYKMRSELVEAVQKNQFLVIVGETGSGKTTqITQYLNEEGFSNHGIIGC 446
                      588999*************************9864899998887776666555 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.5
                      ETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHH CS
  Sigma54_activ_2  29 ekGsgkelvArlLhknsgpwleifvverlaklpldl 64 
                      +kGs k ++A  +++ s + + if v++++ +  ++
       CCD25179.1 660 PKGSRKVVFATNIAETSITIDGIFYVIDPGFAKINT 695
                      789999999999999999999888887776554444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   2.7      0.23   2.6e+02      57     123 ..     266     340 ..     141     396 .. 0.57
   2 ?   10.3   0.0   0.00066      0.74      20      34 ..     413     427 ..     399     430 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.23
      AAA_23  57 gfeksdveiese.gkvkayveltfenkdgry.............trsiererelskkkgkttkka..klelleideleqfise 123
                   e ++v +e + ++++ +++ ++e+ ++ry             +        ++ + g++t k+  +++l +++e eq+i++
  CCD25179.1 266 EQEADEVQVEANtDDTPDFLKGQLEKGNKRYempkivkvprgsmN--------RAATYGSNTIKThrEEKLAKKKEIEQEIRK 340
                 122222222222223344444445555555555444333333321........222222222222111222222222222222 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00066
      AAA_23  20 gltlItGpNGaGKTT 34 
                  + +I+G++G+GKTT
  CCD25179.1 413 QFLVIVGETGSGKTT 427
                 6779**********9 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00028      0.31       9      34 ..     402     427 ..     397     433 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00028
                 HHHHHHHHHH-SEEEEE--TTSSTTH CS
        PhoH   9 QkeylealkkndivfaiGpaGtGKty 34 
                  +e++ea++kn++++++G++G+GKt 
  CCD25179.1 402 RSELVEAVQKNQFLVIVGETGSGKTT 427
                 56899*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1058 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       996  (0.0555525); expected 358.6 (0.02)
Passed bias filter:                      625  (0.0348597); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.89u 0.29s 00:00:01.18 Elapsed: 00:00:00.46
# Mc/sec: 6931.99
//
Query:       CCD25180.1  [L=195]
Description: hypothetical protein NDAI_0E03630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-43  148.9   0.0    1.3e-43  148.7   0.0    1.0  1  Proteasome  Proteasome subunit


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   0.0   7.2e-48   1.3e-43       7     190 .]       4     184 ..       2     184 .. 0.97

  Alignments for each domain:
  == domain 1  score: 148.7 bits;  conditional E-value: 7.2e-48
                 EEEEEETTEEEEEEEEEEEETTEEEESSSSTSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHCTTTTTS CS
  Proteasome   7 vvGikgkdgvvlaadkratagskllskstveKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrsgrrpfg 105
                 ++Gik +d v+la+ k +t+g ++l++s+ +K +++++hi+++f+G+a+D+ +++++++a++qly +r++++++++ +v++++++ +a   rs rrp++
  CCD25180.1   4 ILGIKVQDSVILATSKAVTRGISILKDSD-DKTRQLSPHILMSFSGEAGDTVQFAEYIQANIQLYAMREDYELSPH-AVSSFVRQELAKSIRS-RRPYQ 99 
                 89**********************99998.**********************************************.9999999999999999.99*** PP

                 EEEEEEEEE.TTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 106 vslliagvd.eeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 +++li+g+d ++++p Lyqid+ G+ +e  +++a+G+   +  ++l+++y++d+t ee+++l + ++ e+ +r+ +  k++ v v+
  CCD25180.1 100 ANVLIGGFDtKKDTPGLYQIDYLGTKVEL-PYAAHGYSGFYTFSLLDRHYRPDMTTEEGLKLLKLCITELEKRMPVDFKGVFVKVV 184
                 *********8899****************.6*****88999*********************************999999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1434.58
//
Query:       CCD25181.1  [L=225]
Description: hypothetical protein NDAI_0E03640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-07   31.0   0.0    3.5e-07   30.3   0.0    1.4  1  NAD_binding_10  NAD(P)H-binding
    2.3e-07   30.5   0.0    1.3e-06   28.1   0.0    1.9  1  HIM1            HIM1
    7.6e-05   22.3   0.0    0.00012   21.6   0.0    1.5  1  Epimerase       NAD dependent epimerase/dehydratase family
     0.0017   18.0   0.1     0.0078   15.8   0.1    2.2  1  NmrA            NmrA-like family
  ------ inclusion threshold ------
      0.026   13.7   0.0       0.56    9.3   0.0    2.2  2  NAD_binding_4   Male sterility protein
      0.065   13.7   0.0       0.17   12.3   0.0    1.8  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.2e-10   3.5e-07       1     181 [.       7     201 ..       7     204 .. 0.73

  Alignments for each domain:
  == domain 1  score: 30.3 bits;  conditional E-value: 1.2e-10
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHHCTTTCEEEE--TT-CCHHHHHHTT-SE.EEES-.....--TCC..........HHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaeleaeeglevvegdvtdvedlaealkgada.Vvsal.....ggggk..........deegak 79 
                     GAtG  Gr+ v+ + ++++++ ++++ +  +l+   ++ g +++++  td ++ a+ + + ++ V+++      g              d++  +
      CCD25181.1   7 GATGLCGRYFVEYAEKSSKIS-KIFTVTRRSLP---QKVGPRITQLVETDNSKWASMIPDKEInVLFTSlsttrG---AaggfdeqykiDHDLNI 94 
                     9*************9998554.78887888887...568999999999999*******88775565555465552...144464455555555** PP

                     HHHHHHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEE.EEE-CEE-ST..--SEEEE.............E CS
  NAD_binding_10  80 nivdaakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTi.vrpggLtdep..ttkyrvv.............e 158
                      +++aake+g + +vlvs+ g+  +         +++  ay + k + e+ + a g+d Ti +rpg L  +   +++  ++              
      CCD25181.1  95 ELAKAAKEKGCSTIVLVSSRGAHAD---------SRM--AYTRMKGEIERDIIALGFDHTIiLRPGILLGQRdsNGDSGFGggiasmiggflynH 178
                     **********************942.........223..78899**************986379**99544212333333333344566666544 PP

                     TTSS----EEEHHHHHHHHHHHC CS
  NAD_binding_10 159 kgepfkggsisradVAdvlvavl 181
                     k + fkg s++ +dV +v v+++
      CCD25181.1 179 KRNLFKGHSVEAEDVGKVGVHLA 201
                     56677888888888888877766 PP

>> HIM1  HIM1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   4.2e-10   1.3e-06      46     148 ..      63     160 ..      44     182 .. 0.79

  Alignments for each domain:
  == domain 1  score: 28.1 bits;  conditional E-value: 4.2e-10
        HIM1  46 sdvetlistLGstsaeekkskvkrkfvdYeLnlklakeFantedKklvivTsfNnkllskvspYfrtKlklEndLktklepklkeLviLRPGPlvGeht 144
                 +++++l ++L +t+  +     +++++d++Ln++lak+  ++    +v+v s   ++ s++  Y r+K ++E d+    +  +++ +iLRPG l+G+  
  CCD25181.1  63 KEINVLFTSLSTTRGAAGGF-DEQYKIDHDLNIELAKAAKEKGCSTIVLVSSRGAHADSRM-AYTRMKGEIERDII---ALGFDHTIILRPGILLGQRD 156
                 78999999998888655444.45799************99999999999999888887765.7***********84...45799************998 PP

        HIM1 145 kpie 148
                 ++ +
  CCD25181.1 157 SNGD 160
                 7665 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   4.2e-08   0.00012       1     117 [.       3     115 ..       3     185 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 4.2e-08
                 EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl..elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqgt 95 
                 +l+ GatG+ G+++v++ ++     ++ +++r+s  ++      +  ++++l  td+s+++ ++ ++++++ +     ++ +  +    + ++++  ++
  CCD25181.1   3 ALIFGATGLCGRYFVEYAEKSSkiSKIFTVTRRSLPQK------VgpRITQLVETDNSKWASMIPDKEINVLFTS--LSTTRGAAGGFDEQYKIDHDLN 93 
                 599*****************999666*******43333......34489999999**********9999999999..888888888889999999**** PP

                 HHHHHHHHHHTCTEEEEEEEGG CS
   Epimerase  96 lnlleaarkagvkrllflsSse 117
                  +l++aa+++g+  ++ +sS  
  CCD25181.1  94 IELAKAAKEKGCSTIVLVSSRG 115
                 *************999999954 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   2.6e-06    0.0078       2     140 ..       4     146 ..       3     221 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.6e-06
                 EESSTTSHHHHHHHHHHHH..HT-EEEEEES-S....-SHHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG...S-HHHHHHHHHHHHHH CS
        NmrA   2 lviGaTGrqGksvvrallk..aghkvralvRdt....kselakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy...skeiedgkklvdAake 91 
                 l++GaTG  G+++v+++ k  +  k++ ++R +     + ++++l e  +   +  + dke+ v   + + +  ++ gf    +   +   +l++Aake
  CCD25181.1   4 LIFGATGLCGRYFVEYAEKssKISKIFTVTRRSlpqkVGPRITQLVETDNSKWASMIPDKEINVLFTSLSTTRGAAGGFDeqyKIDHDLNIELAKAAKE 102
                 79***************9975567899999988776666677777777777766666677655544444444555555546234444456779****** PP

                 HS-SEEE.EEE---GG.GT.SSS---TTTHHHHHHHHHHHHCTS-EEEEE CS
        NmrA  92 aGvkhfi.ySslgddndrsnaeepavphfdsKaeieeyvralgipytfvy 140
                  G   ++  Ss g++ d        +    +K eie+ + alg+ +t+++
  CCD25181.1 103 KGCSTIVlVSSRGAHADSR------MAYTRMKGEIERDIIALGFDHTIIL 146
                 **66655166666666444......555689**************99874 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00019      0.56       3      55 ..       7      59 ..       5      77 .. 0.81
   2 ?    2.7   0.0      0.02        60     166     214 ..     114     163 ..      62     196 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00019
                   -TTSHHHHHHHHHHHHHS-.T.EEEEEE-SSSHHHHHHHHHHHT-SS-HHHHHH CS
  NAD_binding_4  3 GaTGFLGkvLlekLLrttpev.kiyllvRaksgesaeeRleeelekkelfsall 55
                   GaTG  G++++e   +++ ++ ki+ + R +  +++  R+++ +e+++ ++a +
     CCD25181.1  7 GATGLCGRYFVEYAEKSS-KIsKIFTVTRRSLPQKVGPRITQLVETDNSKWASM 59
                   9**********9876666.588******************99998888777764 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.02
                    EEETTTCCCHHHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-....-SSST- CS
  NAD_binding_4 166 raklkglpntYeqsKalaEklvrearrrsglpvvivRpsiitg....esktGw 214
                    r  +++   +Y++ K + E+ + + +      ++i+Rp+i++g    +  +G 
     CCD25181.1 114 RGAHADSRMAYTRMKGEIERDIIALGFD---HTIILRPGILLGqrdsNGDSGF 163
                    5556666667777777777766666633...3579999999996544223333 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.8e-05      0.17       3      75 ..       4      73 ..       2     124 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.8e-05
                    EEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEEGGGGGCTT-SEEEE-SC CS
  Semialdhyde_dh  3 aivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkvedvdeeelkevdivflalp 75
                     i GatG  G+ ++++ e++ +++ ++ +++++   +k+  +  +l e+ + k  ++ +   ke++++f++l+
      CCD25181.1  4 LIFGATGLCGRYFVEYAEKSSKISKIFTVTRRS-LPQKVGPRITQLVETDNSKWASMIP--DKEINVLFTSLS 73
                    699******************999999888877.5555555555555566666666333..356777777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1670.51
//
Query:       CCD25182.1  [L=393]
Description: hypothetical protein NDAI_0E03650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-28   97.2   0.5    4.5e-28   97.2   0.5    2.3  2  SRP1_TIP1    Seripauperin and TIP1 family
  ------ inclusion threshold ------
       0.36    9.7   0.0       0.36    9.7   0.0    2.0  2  XRN_M        Xrn1 helical domain


Domain annotation for each model (and alignments):
>> SRP1_TIP1  Seripauperin and TIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.5   5.1e-32   4.5e-28       3      96 ..      15     106 ..      13     109 .. 0.95
   2 ?   -3.6   0.1       1.3   1.2e+04      42      53 ..     347     358 ..     338     374 .. 0.61

  Alignments for each domain:
  == domain 1  score: 97.2 bits;  conditional E-value: 5.1e-32
   SRP1_TIP1   3 vaaaqteaevaelevllnDvksnlkeYlslakansgfslPsgvlsvyaalatatddsYttllseidfaevssmitglPWYssRLepaiesalas 96 
                 +a+a +e +v+ele++++Dvksnl  Y++l +  +gfslP+++++vy+a+ +   + Ytt ++e+d++++s+m+t lPWYs+ +ep+iesal+s
  CCD25182.1  15 AAMAISEDDVVELEIVMDDVKSNLVRYMNLLT-VPGFSLPDNIMDVYMAM-NSDPEGYTTAFTELDMTQISNMMTWLPWYSTEIEPKIESALSS 106
                 5789999***********************99.9***************9.667899**********************************997 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.3
   SRP1_TIP1  42 Psgvlsvyaala 53 
                 Ps v ++ +a +
  CCD25182.1 347 PSTVSQITKAQT 358
                 556665555543 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0     4e-05      0.36      37     152 ..      54     171 ..      49     201 .. 0.74
   2 ?   -1.8   2.2      0.12   1.1e+03      99     139 ..     316     353 ..     264     378 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 4e-05
       XRN_M  37 dlllkvYkkelkklggyltdngevkldrveklvslvgkveekifrkrkeredrkekklakeeeaskedaan..eeaavaeeklseskvaksaeaeaeae 133
                 d ++ vY ++ +  +gy t   e+++ ++ ++++ +  +  +i  k ++  ++ + k+ ++++ +++ + +  ++aa+a  ++++s va + +++++  
  CCD25182.1  54 DNIMDVYMAMNSDPEGYTTAFTELDMTQISNMMTWLPWYSTEIEPKIESALSSLHPKASSTTTITSTTTSTssTQAASAAPSSASSAVASTTTVKSSVA 152
                 789*****************************************9999999999999988877665554440044444444555555555555555555 PP

       XRN_M 134 aeaeaeakaekekrekaek 152
                 a++++ea+a+ +  e+ ++
  CCD25182.1 153 ATTSTEASAVASSAETSTT 171
                 5555555555444444333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.12
       XRN_M  99 easkedaaneeaavaeeklseskvaksaeaeaeaeaeaeae 139
                 +++++ +++++ ++ +e+ ++sk ++s +a+++   ++++ 
  CCD25182.1 316 TSTAVTTKKTTVTICDEECKKSKASTSTAAKPS---TVSQI 353
                 222222222222222222222222222222222...22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2413  (0.134586); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.16u 0.30s 00:00:01.46 Elapsed: 00:00:00.48
# Mc/sec: 2450.39
//
Query:       CCD25183.1  [L=425]
Description: hypothetical protein NDAI_0E03660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-11   42.7  15.4    4.9e-11   42.7  15.4    2.3  2  WSC              WSC domain
    0.00019   20.4   1.1    0.00019   20.4   1.1    1.4  2  Amnionless       Amnionless
     0.0015   18.4   1.4      0.003   17.5   1.4    1.5  1  Gly-zipper_Omp   Glycine zipper
  ------ inclusion threshold ------
      0.021   15.0   0.0      0.036   14.3   0.0    1.3  1  ApbA_C           Ketopantoate reductase PanE/ApbA C terminal
      0.032   14.3   1.1      0.032   14.3   1.1    2.2  2  Bacteriocin_IIc  Bacteriocin class II with double-glycine lea
       0.22   11.9   2.2        0.5   10.8   2.2    1.6  1  Romo1            Reactive mitochondrial oxygen species modula
        3.2    6.3  12.6        3.8    6.0  12.6    1.1  1  Hamartin         Hamartin protein


Domain annotation for each model (and alignments):
>> WSC  WSC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7  15.4   1.9e-14   4.9e-11       1      82 []      31     106 ..      31     106 .. 0.88
   2 ?   -3.3   0.4       4.2   1.1e+04      19      24 ..     138     143 ..     122     159 .. 0.46

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 1.9e-14
         WSC   1 ylGCytdssesrrllgpssasdstmtpekCaafCkakgykyagledgseCyCgnslpaaavkassssCnasCsGdssqtCGg 82 
                 yl Cy +     ++ ++  +s++ ++ ++C + C a+g +y++l++  +CyCgn++p+++  +  ssCn++C+G+ +++CGg
  CCD25183.1  31 YLNCYGS----IPSGFTLYDSYAYQSSSHCYTNCLANGSQYFALTNHADCYCGNQAPSSSDVS--SSCNTNCNGYGQEMCGG 106
                 6777774....4667777788899999*******************************77766..45**************8 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.2
         WSC  19 sasdst 24 
                 ++s+ +
  CCD25183.1 138 TSSTRS 143
                 222222 PP

>> Amnionless  Amnionless
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   1.0       3.3   8.6e+03     190     212 ..      69      92 ..      62      98 .. 0.67
   2 !   20.4   1.1   7.3e-08   0.00019     245     414 ..     153     322 ..     144     363 .. 0.64

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 3.3
  Amnionless 190 scsdpsgCeCgnse.lleeiCaav 212
                 ++++   C Cgn++     + ++ 
  CCD25183.1  69 ALTNHADCYCGNQApSSSDVSSSC 92 
                 567788999999986444554444 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 7.3e-08
  Amnionless 245 skfdleeyrarlrekfl..klpkykevqlavskvaksqr............evssdeeiqivildpekgsyaerlaqelladiaehgealgilsaelet 329
                 s+f+  ++   ++++ +   +p+++++  ++s +++ ++             +s +e + +v +   + ++ + ++ ++ ++i +  +a+g+ + ++  
  CCD25183.1 153 SHFSSSTFPTSISTTSTllPNPQTSSTTSTTSSISSANSiinsgtttqeqaTTSVSETVAVVYQT--AYNTEGGSTVFVTNTITQSYAATGLMNNNSSS 249
                 45666777777765544336666666666666666555577787777766344445555555555..6777889999***************9998777 PP

  Amnionless 330 sgasssdssaagapgesaglvlgivfglvlllllllillllllrrkgvlrlpqllkspsrreeveelkakldkgfdnprFdnves 414
                 s+ s+ +++   ++++++g ++g v+g v+ +++++i++ll l r++ ++         ++ ++e+  +++ k  +++ +d+++ 
  CCD25183.1 250 SNMSKDSKN---KKKTNVGAIVGGVVGGVVGAIVVAIGILL-LIRHINVKR--------EEARMEKEYQEAIKPVEFNDYDTTAT 322
                 766555444...67888899999999996666666665555.555555522........34566666777777888888887732 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   1.4   1.2e-06     0.003      20      38 ..     262     280 ..     238     284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 1.2e-06
  Gly-zipper_Omp  20 rgtGaliGAavGaavGgli 38 
                     +++Ga++G++vG++vG+++
      CCD25183.1 262 TNVGAIVGGVVGGVVGAIV 280
                     4799999999999999964 PP

>> ApbA_C  Ketopantoate reductase PanE/ApbA C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.4e-05     0.036      35     101 ..     198     272 ..     176     273 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.4e-05
      ApbA_C  35 elralvrallkEalavaeaegvelseer...leeaveavlek...taan..rsSMlqDveagrktEidyinGavv 101
                  +++ +++ + E +av  +  ++ +  +   + +++++  ++   + +n  +s M +D ++++kt++ +i+G vv
  CCD25183.1 198 TTQEQATTSVSETVAVVYQTAYNTEGGStvfVTNTITQSYAAtglMNNNssSSNMSKDSKNKKKTNVGAIVGGVV 272
                 567788888999999995555332222222333333322222233333345999******************887 PP

>> Bacteriocin_IIc  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   1.1   1.3e-05     0.032      16      62 .]     222     280 ..     219     284 .. 0.72
   2 ?   -0.5   0.1      0.55   1.4e+03      14      29 ..     337     358 ..     334     360 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.3e-05
  Bacteriocin_IIc  16 eGGkcaqgtvggivggalaGaatGaa....................tlgilgaavGavvGavvGail 62 
                      eGG     tv ++ +   ++aatG +                    +    ga+vG+vvG+vvGai+
       CCD25183.1 222 EGG----STVFVTNTITQSYAATGLMnnnssssnmskdsknkkktnV----GAIVGGVVGGVVGAIV 280
                      677....7888888888889999999999999999999999955444....5555555555555543 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.55
  Bacteriocin_IIc  14 kVeGG......kcaqgtvggiv 29 
                       V GG      ++ +++vg+++
       CCD25183.1 337 DVAGGvtitndNNGNKNVGDVI 358
                      5899999999999999999875 PP

>> Romo1  Reactive mitochondrial oxygen species modulator 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.2    0.0002       0.5       4      30 ..     260     286 ..     257     290 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
       Romo1   4 dkikmGalmGaaVGlaiGllfGtfsal 30 
                 +k  +Ga++G++VG+++G+++  + +l
  CCD25183.1 260 KKTNVGAIVGGVVGGVVGAIVVAIGIL 286
                 57789***************9887765 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  12.6    0.0015       3.8     275     419 ..     119     260 ..      77     316 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0015
    Hamartin 275 dptsspytdlqsstgsststpistkr.lqlsslsgtspavlsvessrskddeislWSPssvcgmttppsspgivpttelelsssasllsskvsstpeaa 372
                 d ++++  d++ss +++tst +st + ++ s+++ ++ + +++++s s +++     P   +  tt+ +s+ +++++ +++  +++++++++ s + a+
  CCD25183.1 119 DDNTGTSNDAVSSPTTTTST-SSTRSiTSSSTTTTSHFSSSTFPTSISTTSTL---LPNPQTSSTTSTTSSISSANSIINSGTTTQEQATTSVSETVAV 213
                 33334444444443333333.22222011222233333344444444444443...5555555555555665555444888888888888888888888 PP

    Hamartin 373 gkatpetTPakssrklppslsesavvvalpassrksspprkdekses 419
                 + +t   T   s+  + ++ ++s++ + l ++  +ss ++kd+k+++
  CCD25183.1 214 VYQTAYNTEGGSTVFVTNTITQSYAATGLMNNNSSSSNMSKDSKNKK 260
                 88888888888887678888888888777777778888888887743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1983  (0.110603); expected 358.6 (0.02)
Passed bias filter:                      690  (0.0384851); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 2886.79
//
Query:       CCD25184.1  [L=522]
Description: hypothetical protein NDAI_0E03670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-60  202.6  26.6    1.7e-43  148.4   3.9    5.1  5  DUF2408        Protein of unknown function (DUF2408)
  ------ inclusion threshold ------
      0.021   14.4   5.1      0.014   15.0   3.1    1.8  1  Exonuc_VII_L   Exonuclease VII, large subunit
      0.038   14.4   1.3          6    7.4   0.1    3.7  4  FAA_hydro_N_2  Fumarylacetoacetase N-terminal domain 2
        0.3   11.0   1.1         23    5.0   0.0    3.1  3  MtrG           Tetrahydromethanopterin S-methyltransferase, s
       0.94    9.8   8.1       0.62   10.4   0.4    3.9  3  MLD            Membrane Localization Domain


Domain annotation for each model (and alignments):
>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   2.0   9.1e-05      0.33       4     125 ..      18     135 ..      16     139 .. 0.83
   2 ?    1.1   3.9      0.16   5.6e+02      43     124 ..     145     220 ..     136     221 .. 0.54
   3 !  148.4   3.9   4.9e-47   1.7e-43       1     135 []     218     363 ..     218     363 .. 0.98
   4 !   30.5   0.0   1.2e-10   4.4e-07      45     122 ..     367     437 ..     364     441 .. 0.90
   5 !   35.1   0.0   4.8e-12   1.7e-08       4     101 ..     419     506 ..     416     515 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 9.1e-05
     DUF2408   4 lspelepiyekLvsirrsLlslaakskaeeakeseevkeelkelkeeLkkieskrdeegkFkseegke..vvekgqavlngLlddcfdlvedlkaqdge 100
                 +++e e i++ L+++r  L +l  + ++    +s++v+++ +e+ ++++++++ r+++    s++ ++  ++ +  + +++ ldd f+l++        
  CCD25184.1  18 VPKEEEGILKYLLDVRNYLQNLKRNRTQY--LNSQAVQKTYQEVLTKVRELDEIRKNNHATPSNSATTliHSMELHNRVDSVLDDVFQLLSLCFLT--- 111
                 57788899999*********999888876..67888999999999999999999999555544444334366666999***********9998888... PP

     DUF2408 101 ekkvasslqpiYdrLleikttLenL 125
                    +++s   +Y +L+++++ Le+L
  CCD25184.1 112 -VGLKNSAPATYASLSTVQSLLEHL 135
                 .469999999*************98 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.16
     DUF2408  43 elkelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqdgeekkvasslqpiYdrLleikttLen 124
                 +l ++ke+L +i +  +e    +s+e  +++++g+   n+ ld+     ++ k ++  +  ++ +lq+  d+  ei ++Le+
  CCD25184.1 145 DLGPIKERLDQISKIVEE--S-CSQEI-KLDNEGDDQFNQYLDETELEQNQNKIEQ--DLLLRAKLQHCLDEYHEIESKLEE 220
                 556666666666665555..1.22232.4666666666666666555555444443..456666666666666666666664 PP

  == domain 3  score: 148.4 bits;  conditional E-value: 4.9e-47
     DUF2408   1 leelspelepiyekLvsirrsLlslaakskaeeakesee...........vkeelkelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcf 88 
                 lee++p+l++i+ekL++irr+Llsl+a++k+++  +++e           ++++l el++e k++es+rde gkFks e+ e++e+gq+vl+gL ddc+
  CCD25184.1 218 LEEIDPSLNSILEKLFQIRRGLLSLVASAKKNSLLSQKEldekhlispeyLNKKLLELEKEFKDLESNRDEFGKFKSLETGEIPENGQNVLKGLEDDCN 316
                 799****************************977777779*********************************************************** PP

     DUF2408  89 dlvedlkaqdgeekkvasslqpiYdrLleikttLenLllTrrWtLRE 135
                 dl++dl++q++ + +++++lqp+Y++L+eikttLe+L++TrrWtLRE
  CCD25184.1 317 DLINDLSHQTNGRLTLDPDLQPVYEQLIEIKTTLEKLMITRRWTLRE 363
                 **********999*********************************9 PP

  == domain 4  score: 30.5 bits;  conditional E-value: 1.2e-10
     DUF2408  45 kelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqdgeekkvasslqpiYdrLleikttL 122
                   ++++L +i++ r++ gkF s++   +++kgq ++  Ll++c+ ++ +l +    ++ v++slqpi ++L+++++ L
  CCD25184.1 367 FTYQKKLGEIDNLRVK-GKFPSKS---SDSKGQFIILYLLRRCYAIIYKLLEC---SEPVSESLQPIHNQLSTVRRCL 437
                 5789************.***5555...69**********************99...579***************9877 PP

  == domain 5  score: 35.1 bits;  conditional E-value: 4.8e-12
     DUF2408   4 lspelepiyekLvsirrsLlslaakskaeeakeseevkeelkelkeeLkkieskrdeegkFkseegkevvekgqavlngLlddcfdlvedlkaqdgee 101
                 +s++l+pi+++L ++rr Ll +      +        + el +++ +L ++++ r++ g F  ++g    ++gq  ln Ll+ cfd+v+++k + + +
  CCD25184.1 419 VSESLQPIHNQLSTVRRCLLDIKRLGGVS-------NERELYPYQMKLASLDNLRKD-GIFYDSDG--NIPEGQGTLNALLAACFDIVHEMKVEAEAN 506
                 899******************98887776.......379******************.***88887..89*********************9997332 PP

>> Exonuc_VII_L  Exonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   3.1   3.8e-06     0.014     121     272 ..      67     236 ..      61     298 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.8e-06
  Exonuc_VII_L 121 DfvAdlrapTPtaaAelvvpdkaeleeqleelerrlekaikrll................eekkqrleklasrlkspeellerkrqrldeleerler 201
                   D + + + +TP++ A  ++ ++ el+++++++ + + + ++ ++                ++ ++ le+l+++    ++ l   ++rld++++ +e+
    CCD25184.1  67 DEIRKNNHATPSNSATTLI-HSMELHNRVDSVLDDVFQLLSLCFltvglknsapatyaslSTVQSLLEHLNESNIFTHHDLGPIKERLDQISKIVEE 162
                   556667789**********.9999*****9999999888876666666666555553333444555555554444567788889999***9999999 PP

  Exonuc_VII_L 202 alkkqlkkkrerleelkerl.kekleekkerlkklkerle.lleekkerleeleeklealsp..lkvLkrGyaiv 272
                   + ++++k  +e  +++++ l +++le++++++++    l+ +l++  ++++e+e+kle ++p  +++L++ + i 
    CCD25184.1 163 SCSQEIKLDNEGDDQFNQYLdETELEQNQNKIEQDL-LLRaKLQHCLDEYHEIESKLEEIDPslNSILEKLFQIR 236
                   999999999999999999997788888888884431.22246888899999999999999985556776655554 PP

>> FAA_hydro_N_2  Fumarylacetoacetase N-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         5   1.8e+04      20      39 ..      41      60 ..      38      65 .. 0.72
   2 ?   -2.7   0.0       2.4   8.5e+03      29      56 ..      79     105 ..      70     108 .. 0.74
   3 ?    7.4   0.1    0.0017         6      33      58 ..     202     227 ..     188     241 .. 0.87
   4 ?    3.6   0.0     0.026        93       1      13 [.     457     469 ..     457     472 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 5
  FAA_hydro_N_2 20 rdlkkavdaseiaptlqaaL 39
                   r+ +++++ +++ +t q++L
     CCD25184.1 41 RNRTQYLNSQAVQKTYQEVL 60
                   56677777777777777776 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.4
  FAA_hydro_N_2  29 seiaptlqaaLdnWdevepaLeelyeaL 56 
                    +  a+tl + ++  ++v + L ++ + L
     CCD25184.1  79 N-SATTLIHSMELHNRVDSVLDDVFQLL 105
                    3.48899999999999999888887766 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0017
  FAA_hydro_N_2  33 ptlqaaLdnWdevepaLeelyeaLna 58 
                    ++lq+ Ld+ +e+e++Lee+  +Ln+
     CCD25184.1 202 AKLQHCLDEYHEIESKLEEIDPSLNS 227
                    68********************9997 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.026
  FAA_hydro_N_2   1 mkLAtlkngtrDG 13 
                    mkLA+l+n  +DG
     CCD25184.1 457 MKLASLDNLRKDG 469
                    9***********9 PP

>> MtrG  Tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       2.3   8.3e+03      10      24 ..      54      68 ..      51      71 .. 0.77
   2 ?    3.2   0.0     0.022        79      10      30 ..     144     164 ..     138     170 .. 0.79
   3 ?    5.0   0.0    0.0063        23      10      27 ..     209     226 ..     206     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.3
        MtrG 10 ddfnevkkrLdeiee 24
                + ++ev  +  e++e
  CCD25184.1 54 KTYQEVLTKVRELDE 68
                678999998887776 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.022
        MtrG  10 ddfnevkkrLdeieekvefvn 30 
                 +d   +k+rLd+i + ve   
  CCD25184.1 144 HDLGPIKERLDQISKIVEESC 164
                 677789*********999655 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0063
        MtrG  10 ddfnevkkrLdeieekve 27 
                 d+++e++++L+ei+  ++
  CCD25184.1 209 DEYHEIESKLEEIDPSLN 226
                 89***********98766 PP

>> MLD  Membrane Localization Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   0.00017      0.62      18      59 ..      54      98 ..      36     101 .. 0.74
   2 ?    0.0   1.4      0.29     1e+03      32      64 ..     186     213 ..     176     221 .. 0.74
   3 ?   -1.1   0.0      0.66   2.4e+03      16      37 ..     419     440 ..     417     444 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00017
         MLD 18 esyqsildkLdeyhellgnmkllkleqvealf...eLrkqiehYl 59
                  yq++l+k +e+ e+ +n   ++ ++ ++l+   eL++++++ l
  CCD25184.1 54 KTYQEVLTKVRELDEIRKNNHATPSNSATTLIhsmELHNRVDSVL 98
                57******9999888888877777666666542229****99877 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.29
         MLD  32 ellgnmkllkleqvealfeLrkqiehYllehpd 64 
                 el++n     ++++e+ + Lr +  h l e+++
  CCD25184.1 186 ELEQN-----QNKIEQDLLLRAKLQHCLDEYHE 213
                 45555.....78899988899999999999885 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.66
         MLD  16 iGesyqsildkLdeyhellgnm 37 
                  +es q i  +L++++  l + 
  CCD25184.1 419 VSESLQPIHNQLSTVRRCLLDI 440
                 6899999999999999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1465  (0.0817112); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 3836.16
//
Query:       CCD25185.1  [L=444]
Description: hypothetical protein NDAI_0E03680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-93  311.6   3.9    5.4e-93  311.2   3.9    1.2  1  Adap_comp_sub   Adaptor complexes medium subunit family
    4.9e-05   22.9   0.1    9.3e-05   22.0   0.1    1.4  1  muHD            Muniscin C-terminal mu homology domain
    0.00025   21.0   0.8    0.00047   20.1   0.8    1.5  1  Clat_adaptor_s  Clathrin adaptor complex small chain
  ------ inclusion threshold ------
       0.16   12.1   0.1        2.7    8.1   0.1    2.2  2  DUF4442         Domain of unknown function (DUF4442)


Domain annotation for each model (and alignments):
>> Adap_comp_sub  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.2   3.9   1.2e-96   5.4e-93       1     263 [.     164     442 ..     164     443 .. 0.98

  Alignments for each domain:
  == domain 1  score: 311.2 bits;  conditional E-value: 1.2e-96
                    XXXXXXXXXXXX-EEEEEEEEEEEEEE-TTS-EEEEEEEEEEEEEE---TT-EEEEEE-SS-EE................--S.SEESEEEEETT- CS
  Adap_comp_sub   1 iswrrkgikykkneiyldviErvsvlvdkkGkilksevqGtiacksklsgmpelklgLndklnk................ekk.ielddvsfHqcV 79 
                    +swr++gikykkne +ld++E++++l+++kG+il+se+ G +++ks+lsgmp+lklg+ndk  +                +++ iel+d++fHqcV
     CCD25185.1 164 VSWRSEGIKYKKNEAFLDIVESINMLMTQKGQILRSEILGVVKIKSRLSGMPDLKLGINDKGIFskqlteddtnnnatskKQNkIELEDLKFHQCV 259
                    69****************************************************************************985557************ PP

                    B-TTHHHH-EEEE---SEEEEEEEEEES--SS--SEEEEEEEEE-TTTSEEEEEEEEEE-S-TT-EEEEEEEEEE--TT-EEEEEEESSTT-EEEE CS
  Adap_comp_sub  80 nldkfeservisFiPpdgeftLmrYrlsannvklPfsvkpkvklsgdevrveielklkenfkkkltlenvkisiplpkevsnlaiktskGkakynp 175
                    +l+kfe+e++i+FiPpdg+f+Lm+Yrl ++ +k+ +++  +v+++++ +r+ei++++k+++kkk+t++nv+i ip+p++++ +++k s+G++k  p
     CCD25185.1 260 RLSKFETEKIITFIPPDGDFELMNYRL-STSIKPLIWCDMNVQVHSN-SRIEIHCRAKAQIKKKSTATNVEILIPVPEDADTPNFKYSHGSIKWVP 353
                    ***************************.****************999.************************************************ PP

                    ETTEEEEEE--EETT-EE..EEEEEEE--------------.EEEEEEEET--SS---EEEEEEE--.-----EEEEEEEEEEE.EEEE- CS
  Adap_comp_sub 176 eenaleWtikklpggnesslsgeleleaesekkeenprdgklvsveFkipgftaSgikVeslkveer.esykpfkwvryvtvsg.eyeir 263
                    e++a++W+i+++pgg+e+s+ +el l+++s+k+ee + + + v+v+F+ip+ft+Sgi+V++lk++e+  +yk+++wvry+t+sg +y+ir
     CCD25185.1 354 EKSAILWKIRSFPGGKEYSMAAELCLPSTSSKSEEVQNKKP-VQVKFQIPYFTTSGIQVRYLKINEPkLQYKSYPWVRYITQSGdDYTIR 442
                    ******************************99999998777.**********************************************99 PP

>> muHD  Muniscin C-terminal mu homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   2.1e-08   9.3e-05     126     246 ..     307     423 ..     282     437 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.1e-08
                 EEEEEE-TTTT--E.EEEEEEEEEEEB-SS-EEEEEESSS..--B-SSS-EEEEE-SSEEEETT---.EEEEEEEEESS---..-SS-EEEEEEE---S CS
        muHD 126 iltyslnpslaiasavtLenlvlvvnldgsratsvqskPq..atfskeksrvtWklpeleltsdsde.gkllarfsteesae..kpgkVevkFeveega 219
                 ++++  +++ +i++++t +n+ +++++ +   t    + +   +++ eks+++Wk+ ++   ++ +  ++l    + ++s e  ++++V+vkF++    
  CCD25185.1 307 RIEIHCRAKAQIKKKSTATNVEILIPVPEDADTPNFKYSHgsIKWVPEKSAILWKIRSFPGGKEYSMaAELCLPSTSSKSEEvqNKKPVQVKFQIP-YF 404
                 444555555579999999*******9988844444444443368*****************9999886777776666666668899*********9.77 PP

                 -SS----EEEEEESSS-T....T---- CS
        muHD 220 tlsrlgislleqkkeedPfaaeegktw 246
                 t s++++  l   k ++P       ++
  CCD25185.1 405 TTSGIQVRYL---KINEPK-----LQY 423
                 7799999888...555553.....334 PP

>> Clat_adaptor_s  Clathrin adaptor complex small chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.8   1.1e-07   0.00047       5     131 ..       5     132 ..       1     142 [. 0.71

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 1.1e-07
                     EEEE-TTS-EEEEEES.SSS-CHHHHHHHHHHHHHHHTT-SSS-SEEEETTEEEEEEEETTEEEEEEEETTS-HHH.HHHHHHHHHHHHHHHCTS CS
  Clat_adaptor_s   5 ililnkkgkvrlakfy.tavddkkkqklieevyelvsaRdsklsniveledlkviYkryasLYFvvivdeqeneli.ilelihlfvesLdkyfgn 97 
                     i   + kg+++l + y + ++ +   k  + + +   +  s +   + +++++ ++ +  ++Y v i +    +++ ++  + + +++L  y++ 
      CCD25185.1   5 IYFCDIKGRPLLSRKYrDDIPLTAIDKF-ASLLADLEEESSVIPPCLTYNNTQYLFIQHSDIYLVAITNLLRTNIAeVFAFLYKIIDVLGDYLKT 98 
                     5556666666666655444444433332.222222233333345678899*******************766665528899************** PP

                     -SHHHHHHCHHHHHHHHHCCEETTEES---HHHH CS
  Clat_adaptor_s  98 VceldlvfnfekvylildEivsgGeiletskkev 131
                     V+e  +  n+  +y +ldE+++ G  + t++k++
      CCD25185.1  99 VEEESIRDNYVIIYELLDELMDYGIPQITETKML 132
                     **********************996554444444 PP

>> DUF4442  Domain of unknown function (DUF4442)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.065   2.9e+02      79     122 ..     297     340 ..     288     352 .. 0.75
   2 ?    8.1   0.1    0.0006       2.7       9      42 ..     397     430 ..     394     435 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.065
                 EEEEEE-S---S-EEEEEE-TTS-TT--EEEEEEEEEEETTE.E CS
     DUF4442  79 gmevdYlakatgdltavaelepedvgekeelvvevevrdekgee 122
                  m+v+  + ++ +++++a+++ ++  + +++++ + v +++++ 
  CCD25185.1 297 DMNVQVHSNSRIEIHCRAKAQIKKKSTATNVEILIPVPEDADTP 340
                 68888899999999999999988887788888888777776654 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0006
                 HHHHSGGGGGG--EEEEEETTEEEEEE---GGGB CS
     DUF4442   9 vslkaPYfgtvgprieelepgraevrlkkrrrvr 42 
                 v + +PYf t g++++ l+ ++ +++ k+ ++vr
  CCD25185.1 397 VKFQIPYFTTSGIQVRYLKINEPKLQYKSYPWVR 430
                 57889**********************9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3360.04
//
Query:       CCD25186.1  [L=196]
Description: hypothetical protein NDAI_0E03690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      8e-32  109.5   0.2    1.1e-31  109.1   0.2    1.2  1  TPP1      Shelterin complex subunit, TPP1/ACD
  ------ inclusion threshold ------
      0.051   13.6   0.0      0.083   12.9   0.0    1.4  1  DUF5505   Family of unknown function (DUF5505)


Domain annotation for each model (and alignments):
>> TPP1  Shelterin complex subunit, TPP1/ACD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.2   1.2e-35   1.1e-31       1     110 [.      20     147 ..      20     148 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 1.2e-35
                 --HHHHHHHT--TTTS-.....................-HHHHT-..GGGEEEEEEEEE.EETTEEEEEEE-SS-EEEEEE-HHHHHHHHHHHSS-TTS CS
        TPP1   1 pWIeklvleaiklssdl.....................spslntnkskaqllkvlkfaqdtsnsaitavlsDsthkIlaiftreavenfereekerits 78 
                 pWI++ ++++i+++++l                     s+++ +n   ++++kv+kf++ ++n++i+a+++Dst++Il++ft+++v +fer +++rits
  CCD25186.1  20 PWIANIIRKEIQAKTYLpgnqrlsiarlsrrdmdapeiSETILNN--YSHFAKVTKFFS-VNNYKIFASIRDSTYQILVEFTPQCVLEFERVYRSRITS 115
                 8***********************************987777777..************.*************************************** PP

                 S-TTSEEEEES-EEEEEEHHHHHHTTS--GGG CS
        TPP1  79 etkgclllikdaslvfqerseirkefaefalq 110
                 et++cl++i+d+++++++rs+ir++f++f lq
  CCD25186.1 116 ETVNCLFVIGDCTVIYKTRSQIRSSFPKFDLQ 147
                 *****************************997 PP

>> DUF5505  Family of unknown function (DUF5505)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   9.3e-06     0.083      59     130 ..       8      85 ..       3     111 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.3e-06
     DUF5505  59 slntlvdsvvckngllnpyakevqfalqylfddd.....eiskrdqd..dfklfllhnydrcenmeeyflinnfsiady 130
                 s +t+ dsv  +  + n   ke+q a  yl  ++      +s+rd d  ++   +l ny +  ++ ++f +nn+ i   
  CCD25186.1   8 SKQTVSDSVFLQPWIANIIRKEIQ-AKTYLPGNQrlsiaRLSRRDMDapEISETILNNYSHFAKVTKFFSVNNYKIFAS 85 
                 778999*****************9.567776665111115789999933455689******************988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1540.85
//
Query:       CCD25187.1  [L=596]
Description: hypothetical protein NDAI_0E03700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.7e-43  144.7   1.4    1.5e-42  143.9   1.4    1.4  1  ETF_QO          Electron transfer flavoprotein-ubiquinone oxi
      2e-10   40.8   0.0    5.8e-06   26.1   0.0    2.4  2  DAO             FAD dependent oxidoreductase
    4.1e-08   32.8   0.0    2.2e-05   23.8   0.0    2.2  2  Thi4            Thi4 family
    4.5e-08   33.2   0.0    1.3e-07   31.7   0.0    1.8  1  NAD_binding_8   NAD(P)-binding Rossmann-like domain
    2.5e-07   30.1   0.1     0.0016   17.6   0.1    2.1  2  FAD_binding_2   FAD binding domain
    5.7e-05   22.5   0.0     0.0012   18.1   0.0    2.2  2  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
    9.5e-05   21.3   0.0    0.00062   18.6   0.0    2.0  1  HI0933_like     HI0933-like protein
    0.00036   19.9   0.1    0.00073   18.9   0.1    1.5  1  Pyr_redox_3     Pyridine nucleotide-disulphide oxidoreductase
    0.00037   19.8   0.0    0.00055   19.3   0.0    1.3  1  FAD_binding_3   FAD binding domain
    0.00074   19.5   0.0     0.0013   18.7   0.0    1.5  1  NAD_binding_9   FAD-NAD(P)-binding
     0.0014   18.1   0.0     0.0027   17.1   0.0    1.5  1  FAD_oxidored    FAD dependent oxidoreductase
     0.0017   18.9   0.1        1.4    9.6   0.0    2.5  2  Pyr_redox       Pyridine nucleotide-disulphide oxidoreductase
     0.0026   16.7   0.2      0.025   13.4   0.0    2.1  2  Trp_halogenase  Tryptophan halogenase
      0.005   16.3   0.0       0.38   10.1   0.0    2.3  2  GMC_oxred_N     GMC oxidoreductase
  ------ inclusion threshold ------
      0.025   13.7   0.0      0.041   12.9   0.0    1.3  1  Lycopene_cycl   Lycopene cyclase protein
       0.04   14.5   0.6      0.096   13.3   0.6    1.6  1  Fer4_7          4Fe-4S dicluster domain
      0.087   13.0   0.5       0.25   11.5   0.5    1.7  1  Fer4_2          4Fe-4S binding domain
      0.089   12.9   0.6       0.19   11.8   0.6    1.5  1  Fer4_10         4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> ETF_QO  Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.9   1.4   1.5e-45   1.5e-42       1     104 []     487     594 ..     487     594 .. 0.93

  Alignments for each domain:
  == domain 1  score: 143.9 bits;  conditional E-value: 1.5e-45
                 SSSS--HHHHHHTTT-B--SSS--SEEES...STTHHHHTHHHHHS-THHHH-TTS-EEEEETT.TTSSEEEEE-CCC--S--HHHHH-TT--EEE--- CS
      ETF_QO   1 gkltfdklssvflsgtnheedqpvhLklk...daevavkvnlekyagpeqryCPagvyeivede.eakekklqinaqnCvhCktCdikdpsqniewvvP 95 
                 +k+tfd+++sv+++gt+h+ed+++hLkl      + +++++++ky+++eqr+CPagvye+v+d+ ++ + k++in+qnC+hCk+Cd+k+p q+i+w+vP
  CCD25187.1 487 NKVTFDIMTSVSRTGTYHDEDEQCHLKLVngeTLQSHAEKTYPKYREVEQRFCPAGVYEYVKDDkSSVGLKFKINSQNCIHCKACDVKTPIQDIDWQVP 585
                 589************************9844345688999**********************9867889****************************** PP

                 STT-C---S CS
      ETF_QO  96 eGggGPkys 104
                 eGg+GPky+
  CCD25187.1 586 EGGDGPKYT 594
                 ********5 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   5.8e-09   5.8e-06       1      43 [.      36      82 ..      36     129 .. 0.73
   2 !   12.1   0.0   0.00011      0.11     146     214 ..     141     226 ..     135     287 .. 0.68

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 5.8e-09
                EEEEECTSHHHHHHHHHHHHTT......EEEEESSSSTTSSGGGSSEEE CS
         DAO  1 dvviiGGGiiGlstAyeLarrg......VtllekgdiagsgaSgrnsgl 43
                dv+i+GGG  Gl+tA  L +        V++lekg+ +g  a + ++ +
  CCD25187.1 36 DVCIVGGGPSGLTTAIKLKQLDkkdklkVVVLEKGSYIG--AHSLSGMI 82
                9*****************6543356899*******7776..55555555 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00011
                 HHHHHHHHHHHHHTT-EEEESECEEEE..EEEETCEEEEEEECT.EEEE..............EEEEEEE--GGGHHHHHTT.CTTT CS
         DAO 146 akltaalaraaealGveilegtevtgl..eeedgkvwgverttp.gend..............aadavVnaaGawsdllgll.keld 214
                  +l+ +l ++ae+ Gve++ g  v ++  +++d+ + gv  t++ g+ +              +a++ V a G++ +l++++ k++d
  CCD25187.1 141 SQLVTWLGEKAEEYGVEVYPGVSVSEVvyNNRDDAIIGV-ATKDsGISKageakdsfergmefHARQTVFAEGCHGSLTKKViKKFD 226
                 5799*****************999998566667788888.555555543466667888899997799********777755555553 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.2e-08   2.2e-05      14      62 ..      31      81 ..      23      90 .. 0.76
   2 !    6.8   0.0    0.0036       3.6      96     184 ..     140     229 ..     103     249 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2.2e-08
                HHTEEEEEEE--SHHHHHHHHHH...HHCTTS-EEEEESSSS--TTTTTTST CS
        Thi4 14 kyaesDvvivGaGssGLtaayyl...akkpdlkvailersvspGGGawlGGq 62
                ++ + Dv ivG+G+sGLt+a  l    kk +lkv++le+   +G    l G+
  CCD25187.1 31 DIEKVDVCIVGGGPSGLTTAIKLkqlDKKDKLKVVVLEKGSYIG-AHSLSGM 81
                56789***************76511167899*******875554.4444555 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0036
                 HHHHHHHHHHHHHTSTTEEEEESEEEEEEEEET.BTEEEEEEEEEHHHHTC.TTTSS.-B-EEEEEEEEEE--GSSSTTTTHHHHHHHHCT CS
        Thi4  96 aalftstllskvlqlanvkllnavaveDlivre.gegvaGvvinwtlvela.hdtqscvDPlvirakvvvdatGhdgeivavvvkkiklea 184
                   ++++ l  k+ +  +v ++ +v+v +++  + ++ + Gv ++ + +++a   ++s       +a+  v a G  g++ + v+kk  l a
  CCD25187.1 140 QSQLVTWLGEKAEE-YGVEVYPGVSVSEVVYNNrDDAIIGVATKDSGISKAgEAKDSFERGMEFHARQTVFAEGCHGSLTKKVIKKFDLRA 229
                 34444455566655.89*************99956****************5445566667889999999999999999999999987654 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.3e-10   1.3e-07       1      38 [.      39      80 ..      39      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.3e-10
                   EE--SHHHHHHHHHHHC....CTEEEEEE-SSSSSSGGG-EE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLak....agfdvlllekrdrlGGraasy 38
                   IvG+G sGl++A  L++    ++++v++lek++++G ++ s 
     CCD25187.1 39 IVGGGPSGLTTAIKLKQldkkDKLKVVVLEKGSYIGAHSLSG 80
                   9**************974332488**************9986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   1.6e-06    0.0016       1      38 [.      36      77 ..      36      81 .. 0.87
   2 !   10.4   0.0   0.00025      0.25     131     209 ..     130     220 ..     118     242 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.6e-06
                   SEEEE--SHHHHHHHHHHHH...TTT.-EEEEESSSGGGSGG CS
  FAD_binding_2  1 DviViGsGlAGLaAAleaae...aGl.kvavvekeqefggat 38
                   Dv ++G+G +GL+ A+++++   + + kv+v+ek+++ g ++
     CCD25187.1 36 DVCIVGGGPSGLTTAIKLKQldkKDKlKVVVLEKGSYIGAHS 77
                   99***************98755455569*********99887 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00025
                    T-.......HHHHHHHHHHHHHHTCTEEEEESEEEEEEEECTT..EEEEEEEEET..........TTTCEE....EEEESEEEE-----GG..... CS
  FAD_binding_2 131 darr.etlvtghallarlvesarkagvdfqerteadeLivedg..rvtGavvenp..........esgrev....rirakavvlatgGfgrallke 209
                    d++  + +++  +l+  l e+a+++gv++++  ++ e++++++   + G+  +++          +    +    +++a+++v a+g  g  l k+
     CCD25187.1 130 DNKGkNYVGSQSQLVTWLGEKAEEYGVEVYPGVSVSEVVYNNRddAIIGVATKDSgiskageakdS----FergmEFHARQTVFAEGCHGS-LTKK 220
                    5555578889999***************************754559***99998899887755433....14466***********98884.5554 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.3e-06    0.0012       2      33 ..      36      71 ..      35     113 .. 0.81
   2 ?    1.8   0.0      0.12   1.2e+02     184     222 ..     142     183 ..     132     213 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.3e-06
                 SEEEE--SHHHHHHHHHHHH....HTS-EEEEETTH CS
                 xxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxx RF
  Pyr_redox_2  2 dvvviGgGpAGlaaaltlaq....agakvtlveleg 33
                 dv+++GgGp Gl++a++l+q     ++kv+++e++ 
   CCD25187.1 36 DVCIVGGGPSGLTTAIKLKQldkkDKLKVVVLEKGS 71
                 8*******************9976699999996333 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.12
                  HHHHHHHHHHHHTTEEEEESCEEEEEEETTE..EEE..EEETT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx..xxxxx RF
  Pyr_redox_2 184 elsaaleealekeGvevklgtsvkeidgnge..kle..vvled 222
                  +l  +l e+ e+ Gvev+ g sv e+  n++       v ++d
   CCD25187.1 142 QLVTWLGEKAEEYGVEVYPGVSVSEVVYNNRddA-IigVATKD 183
                  566788899999**************99988532.13555555 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   6.3e-07   0.00062       2      38 ..      36      76 ..      35     192 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 6.3e-07
                 SEEEE--SHHHHHHHHHH....HHTT--EEEE-SSSSS-HH CS
  HI0933_like  2 dviviGgGaAGlmaAisa....akrgkrVlllekakklgrK 38
                 dv ++GgG++Gl +Ai++    +k + +V++lek++ +g  
   CCD25187.1 36 DVCIVGGGPSGLTTAIKLkqldKKDKLKVVVLEKGSYIGAH 76
                 89***************96666667889*******998864 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   7.3e-07   0.00073       2      31 ..      39      71 ..      38      86 .. 0.83

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 7.3e-07
  Pyr_redox_3  2 IiGaGPaGlaaaielkkagl...edylilEkgn 31
                 I+G+GP Gl++ai+lk+++     ++++lEkg+
   CCD25187.1 39 IVGGGPSGLTTAIKLKQLDKkdkLKVVVLEKGS 71
                 9**************998763224799****95 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   5.5e-07   0.00055       1     124 [.      34     160 ..      34     226 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 5.5e-07
                    EEEEEEE--SHHHHHHHHHHHHTTHH....EEEEESSSSSCCSS.S--EEEHHH.HHHHHHTT-HHHHHHHSEECCCCEEEEEEECCCC.CEEEEE CS
  FAD_binding_3   1 etdVlIVGaGpaGlmlallLseaGvr....vvlvekrsttvvlp.radglnqrt.mellrqlGledrilaegapnelmgealynelsdt.pkarad 89 
                    ++dV+IVG+Gp+Gl++a  L++   +    vv++ek s    ++  + +l++r+ +el+ ++    + + + +++e m+ +++++  ++   +   
     CCD25187.1  34 KVDVCIVGGGPSGLTTAIKLKQLDKKdklkVVVLEKGSYIGAHSlSGMILEPRSfLELFPNMKTPPTDILTLVQEEEMKYFWNEK-LGIpMPHVPG 128
                    589*****************99966688889999999988888877888888884577777666555555554555555555555.2221222222 PP

                    HHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETC CS
  FAD_binding_3  90 lelesspervtvypqteleriLvehaeerglqvrf 124
                    l+   +  + +v +q++l   L e+aee g++v+ 
     CCD25187.1 129 LD---NKGKNYVGSQSQLVTWLGEKAEEYGVEVYP 160
                    22...333344455666666666666666666655 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.4e-06    0.0013       1      38 [.      38      75 ..      38     163 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.4e-06
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdp.sepga 38
                   +ivG+Gp+Gl+++ +L +  +kk++l++ + ++ s +ga
     CCD25187.1 38 CIVGGGPSGLTTAIKLKQL-DKKDKLKVVVLEKgSYIGA 75
                   59*****************.5***********9554464 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.7e-06    0.0027       1      50 [.      36      89 ..      36     193 .. 0.58

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.7e-06
  FAD_oxidored  1 DvvVvGGgpaGvaAAiaAaraGa....kvlLveergvlGGlltsglvatdignk 50
                  Dv++vGGgp+G++ Ai  ++ ++    kv+++e+  ++G  + sg+   +  + 
    CCD25187.1 36 DVCIVGGGPSGLTTAIKLKQLDKkdklKVVVLEKGSYIGAHSLSGMILEPRSFL 89
                  9******************999866668***********988888877666644 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0014       1.4       2      32 ..      37      71 ..      36      80 .. 0.77
   2 ?    6.8   0.0      0.01        10      41      71 ..     142     172 ..     136     184 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0014
                EEEECSSHHHHHHHHHHHHTTS....EEEEEESSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalaelgk....kVtvversd 32
                v +vGgG +gl  A  l++l k    kV v+e ++
  CCD25187.1 37 VCIVGGGPSGLTTAIKLKQLDKkdklKVVVLEKGS 71
                78***************999953333666666655 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.01
                 HHHHHHHHHHHHTTEEEECSEEEEEEEEETT CS
   Pyr_redox  41 easkilqeklekngievllntkveeiegsed 71 
                 ++ ++l ek e+ g+ev+ + +v e++ +++
  CCD25187.1 142 QLVTWLGEKAEEYGVEVYPGVSVSEVVYNNR 172
                 567899********************97776 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.5e-05     0.025       1      33 [.      36      69 ..      36      77 .. 0.90
   2 ?    0.7   0.0      0.18   1.8e+02     156     219 ..     143     223 ..     134     228 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 2.5e-05
                    EEEEE--SHHHHHHHHHHHHHTTTS.SEEEEEE- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk.levtlves 33
                    ++ ivGGG++G ++A+ l++  k++ l+v ++e+
      CCD25187.1 36 DVCIVGGGPSGLTTAIKLKQLDKKDkLKVVVLEK 69
                    589*****************999989*****998 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.18
                     HHHHHHHHHHHCT-EEEE--EE.EEEE-T.TS-EEEEEETT...............S-EEE-SEEEE-SGGG-IIIIIIT- CS
  Trp_halogenase 156 yakfLrrvaearGvtrvegkvv.evqlde.dgrveslrled...............greveadlfiDcsGfrgllieqaLk 219
                     +  +L + ae+ Gv++  g +v ev+ ++ d+++ ++ ++d               g e+ a+  + + G  g l ++++k
      CCD25187.1 143 LVTWLGEKAEEYGVEVYPGVSVsEVVYNNrDDAIIGVATKDsgiskageakdsferGMEFHARQTVFAEGCHGSLTKKVIK 223
                     55678999**********97651677777899******9998777777777777777777777777777777777777665 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.029        29       2      35 ..      36      72 ..      35      91 .. 0.79
   2 !   10.1   0.0   0.00038      0.38     192     238 ..     140     186 ..     117     213 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.029
  GMC_oxred_N  2 delveggGsagsvvAaRLse...dpstsvlvleaggr 35
                 d  ++ggG  g ++A +L +   +++ +v+vle g++
   CCD25187.1 36 DVCIVGGGPSGLTTAIKLKQldkKDKLKVVVLEKGSY 72
                 56799**********9887611156679*******97 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00038
  GMC_oxred_N 192 qstarawLrpalerpnleiltgakaekiilegrkkravGVeasdkkg 238
                  qs   +wL +  e+ ++e+  g+ ++ +++++r++ ++GV+++d++ 
   CCD25187.1 140 QSQLVTWLGEKAEEYGVEVYPGVSVSEVVYNNRDDAIIGVATKDSGI 186
                  67889************************************999865 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.2e-05     0.041       1      34 [.      36      71 ..      36      77 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.2e-05
  Lycopene_cycl  1 DvvviGaGpAglslAarl..teakpglkvvlieasp 34
                   Dv ++G+Gp gl  A +l   ++k +lkvv++e + 
     CCD25187.1 36 DVCIVGGGPSGLTTAIKLkqLDKKDKLKVVVLEKGS 71
                   9**************999777999********9886 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   9.7e-05     0.096      10      44 ..     537     571 ..     536     574 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9.7e-05
      Fer4_7  10 aaCpvkaieldeeenekgtekveidpekClgCgaC 44 
                 + Cp+++ e+ ++++ +   k +i++++C++C+aC
  CCD25187.1 537 RFCPAGVYEYVKDDKSSVGLKFKINSQNCIHCKAC 571
                 57*********9988888899************** PP

>> Fer4_2  4Fe-4S binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   0.00025      0.25       2      16 ..     557     571 ..     556     573 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00025
      Fer4_2   2 pvvvdtdrCigCgaC 16 
                 ++++++++Ci+C+aC
  CCD25187.1 557 KFKINSQNCIHCKAC 571
                 5789*********** PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.6    0.0002      0.19      17      51 ..     537     571 ..     536     574 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0002
     Fer4_10  17 kaCPadltsvgakgeaseeeavrkkvekCtgcgaC 51 
                 ++CPa + ++++ ++ s + + ++++++C++c aC
  CCD25187.1 537 RFCPAGVYEYVKDDKSSVGLKFKINSQNCIHCKAC 571
                 68***99999999********************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 3984.10
//
Query:       CCD25188.1  [L=598]
Description: hypothetical protein NDAI_0E03710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.5   11.1   1.8        2.7    8.7   0.0    2.7  2  DUF2877   Protein of unknown function (DUF2877)


Domain annotation for each model (and alignments):
>> DUF2877  Protein of unknown function (DUF2877)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00015       2.7       9      81 ..     136     204 ..     134     215 .. 0.78
   2 ?    0.3   0.5     0.065   1.2e+03      46      81 ..     392     429 ..     371     487 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00015
     DUF2877   9 TPsgDDfLvGllaalrllgqkeekelaaalaevakakkrttdvSaalLkaalegefseellallkalsseeee 81 
                 TP  DD+L +++++l+ ++ +++    ++l +    + +t+    ++L + l++ +s++l a +k+++++e++
  CCD25188.1 136 TPIDDDVLYAVFVILWEMDPNQQGMTVKQLCD----HLLTKHPNMSTLSTKLSNLISAKLNAYVKKIEKGEKT 204
                 9**************99998888877777654....5667777777788888888888888888888877655 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.065
     DUF2877  46 krttdvSaalLkaalegefseella..llkalsseeee 81 
                 ++tt++ aa L+ + ++++s+ l++  ll++ ++++++
  CCD25188.1 392 SLTTTTMAAQLNNTNNNNASNTLAKkrLLDSNNNNNTK 429
                 55555555555555555555554433333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1854  (0.103408); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.42
# Mc/sec: 4283.01
//
Query:       CCD25189.1  [L=582]
Description: hypothetical protein NDAI_0E03720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-28   97.7   2.2    9.4e-28   96.5   2.2    1.7  1  Cyclin_N  Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   2.2   5.3e-32   9.4e-28      13     126 ..     119     234 ..      83     235 .. 0.90

  Alignments for each domain:
  == domain 1  score: 96.5 bits;  conditional E-value: 5.3e-32
                 TS-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHH..HSSS---HHHHHHHTTTSS-HH CS
    Cyclin_N  13 flpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKv..eeisppkledlvyitdeaftee 109
                  +p+ + ++ qpe+n++mR+ + d+l+ +++++kl+++tlfla++++dRf sk  +++   ql+ +t+L++++K+   + ++p+l++l+ ++ + ++++
  CCD25189.1 119 NKPDLSKFKLQPEINESMRNLIFDFLMCCHTRLKLSTSTLFLAYSIIDRFSSKFLIKNFSYQLISLTALWISSKYwdSKYRIPTLKNLQNLCCNQYSKS 217
                 3444445599*****************************************************************555556****************** PP

                 HHHHHHHHHHHHTTT-- CS
    Cyclin_N 110 eilemErliLetLnfdl 126
                 e++emE++iL+++n+++
  CCD25189.1 218 EFKEMELQILKAFNWSV 234
                 ***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1109  (0.0618551); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 4325.23
//
Query:       CCD25190.1  [L=715]
Description: hypothetical protein NDAI_0E03730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.031   14.5   0.5      0.031   14.5   0.5    2.5  2  DAG_kinase_N  Diacylglycerol kinase N-terminus
      0.033   14.4   2.5       0.35   11.0   0.1    2.9  2  Pox_D2        Pox virus D2 protein


Domain annotation for each model (and alignments):
>> DAG_kinase_N  Diacylglycerol kinase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3      0.43   3.9e+03     127     129 ..      57      59 ..      19     107 .. 0.48
   2 ?   14.5   0.5   3.4e-06     0.031      42      84 ..     564     607 ..     555     704 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.43
  DAG_kinase_N 127 sek 129
                    ++
    CCD25190.1  57 NQS 59 
                   111 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.4e-06
  DAG_kinase_N  42 peepidyegFklFlk.tYLevdlpeelcqrLFlsFqkkesqees 84 
                   ++ep d   Fk+F k t+L +d+  ++++++F+ F k  +++e 
    CCD25190.1 564 TKEPFDKRRFKAFAKaTFLKNDIDIDFSEKIFRDFVKGAKSREL 607
                   45699********9768******************988666333 PP

>> Pox_D2  Pox virus D2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.9e-05      0.35     102     130 ..      76     104 ..      57     115 .. 0.87
   2 ?    2.0   0.3     0.025   2.2e+02      20      76 ..     303     361 ..     292     406 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.9e-05
      Pox_D2 102 edeeipseaketklvLleLFNsFktgkke 130
                  ++++ se ++ +  Lle+FN+Fk+g +e
  CCD25190.1  76 LKNKLTSELRKNNSSLLEIFNTFKMGVNE 104
                 5688999******************9876 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.025
      Pox_D2  20 diekilkekyivlerssngtlvr..vhvydkvaRfDnk.tiyrvvKfvykdredilkllF 76 
                 +i+ ++++ + v e + ++ +    +  y     fD   +i++  K  +kd++++ + l 
  CCD25190.1 303 KIDDLYHSYTYVKE-DLDADILTrfMDKYTAFNQFDKTiSIFNELKDQFKDNKSFQNRLL 361
                 56666665444444.3344333212678999*****7538***********998765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1040  (0.0580066); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5113.00
//
Query:       CCD25191.1  [L=977]
Description: hypothetical protein NDAI_0E03740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-159  532.1  44.8     2e-159  532.1  44.8    4.1  3  SOG2      RAM signalling pathway protein
    7.6e-13   48.0  12.1    1.3e-07   31.3   1.5    3.1  2  LRR_8     Leucine rich repeat
    1.6e-11   44.2  18.0    1.9e-06   28.1   1.8    4.7  4  LRR_4     Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.011   16.0   0.8      0.039   14.2   0.8    2.0  1  PRD       PRD domain
      0.012   15.6   6.8         25    5.2   0.4    5.8  5  LRR_6     Leucine Rich repeat
       0.13   12.9  10.1        4.8    8.1   0.8    5.8  4  LRR_1     Leucine Rich Repeat
       0.13   11.7  10.0       0.13   11.7   0.4    3.0  3  LRR_9     Leucine-rich repeat


Domain annotation for each model (and alignments):
>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   5.3     0.038        98     218     360 ..     203     264 ..     142     294 .. 0.43
   2 !  532.1  44.8  7.6e-163    2e-159       1     507 []     298     895 ..     298     895 .. 0.90
   3 ?   -5.7   9.8         7   1.8e+04     262     319 ..     906     963 ..     896     977 .] 0.29

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.038
        SOG2 218 fsaqdveqGaaltplrsdqipfnlsrsrrssssgnsaspaangaqsetsersasssg.vqssasstPlgegstsppgalsrqslsttgststltsssks 315
                 ++a+ ++ ++ +                      ns+++++++ +++ s  s s+ + +++s  +tP +++++s+                        
  CCD25191.1 203 QEAKMSKASKRMG-------------------FINSLNSSNSMVNTSGSSISLSNGVvANNSYGTTPTSTNNNSN------------------------ 258
                 2223333333333...................2222222222222222222222222233333333333333332........................ PP

        SOG2 316 rsssrsntnasastprslattpappasaesfastltasrintlaa 360
                                                         n++++
  CCD25191.1 259 ---------------------------------------GNNNTT 264
                 .......................................222221 PP

  == domain 2  score: 532.1 bits;  conditional E-value: 7.6e-163
        SOG2   1 YfrRLSvLPee.tiskavkvpllelVdaaRglLFalsqihqairqitsfvkeeriavslerllysasshidnLieaLerfdslesrrgtpspsvdravi 98 
                 Yf+RLS+LPee ++++++k p++elV ++R+lLF++++++q+ir+i+sf+ke++iav++++llys++shidnL+e+L++++++e+       ++d+a+i
  CCD25191.1 298 YFKRLSILPEEnSTNEEHKIPHAELVLSCRKLLFSFTECQQSIRRIASFCKENAIAVDIVSLLYSVRSHIDNLVEVLQQAENDEN-------PQDEALI 389
                 ***********999*********************************************************************99.......9****** PP

        SOG2  99 klCktivsaFkkiisvLrknlkafvesdDvrYiRtllLmlygSmaEvrnawksiapeleavqplkptaskkkragrtksksisttssgssstlvssaes 197
                 klC+ i+s+Fkkii++Lrkn+++f+e+dD++++R+++++l++S++E++naw++i++e+       p+a+kkk++++++s++is++++++ss++++s++s
  CCD25191.1 390 KLCMIIISIFKKIIALLRKNFETFFENDDLCFVRMFYMTLLCSYTEMYNAWTFISSEK-------PKATKKKSITQKDSSIISFHAGHRSSNSANSTTS 481
                 **********************************************************.......899******************************* PP

        SOG2 198 stesrassvtytartRhagsfsaqdveqGaaltplrsd..qipfnl.....................srsrrssssgnsaspaangaqsetsersasss 273
                 +++s++++v+y++rtR+++++++  +++++++++ +s+  ++++n+                     s++++ssss+n++++++n       ++++s+s
  CCD25191.1 482 NGSSNTGTVNYKSRTRSNTLQNRIVSNPSTSIESTPSSilTQSLNTmagniattpanvmkqtstavgSVAIKSSSSPNGSKNNSN------IFWAHSTS 574
                 *********************************5455533444444788***********9888888888888888888888887......78****** PP

        SOG2 274 g.vqssasstPlgegstspp.galsrqslsttgststltsssksrs..................................................... 317
                 + +++++s+  lg++s+sp+ + +++qsl+++ ++    ++++s                                                       
  CCD25191.1 575 ApLHRNHSI--LGDESPSPSpSVITSQSLEESPKK----MGQRSPRpslilkgknelsnnsiaiggvqqqqqqqqqqlstspptarsksnpiinsaisg 667
                 *********..999999997788888887764333....2222222456899999999999999999999999999999999999999999******** PP

        SOG2 318 .....ssrsnt..nasastprslattpa...........................ppasaesf.....astltasrintlaa.......vDeqlletle 370
                      +   nt  na +s+pr++a+t++                           p+as++++     +     ++++t++        vD +l++tl 
  CCD25191.1 668 tffntA---NTnpNA-NSPPRMNASTASttsmvsagpgttatttvhvpaiantqiPTASVTTNtttttT-----TTTTTVTPissseedVDLNLYQTLL 757
                 **6432...332255.8899999999999999999*999999999999999999977777776433222.....222222224445568********** PP

        SOG2 371 tavklalvvysqlteeiskvaeassagqqrlteelakkirdLtdtcrqameltkaLrerLsllklked.l.sekgsttsektklwedinaFlksivsil 467
                  +vk+++vvy+qlt+eiskva ass+gqq+lt+ la+ki+dLtdtc+qamel+k+L+ rL+ll l++d + +ek++t+ ek+k+we+in+Flksi+sil
  CCD25191.1 758 LVVKTVNVVYNQLTAEISKVALASSTGQQILTDLLATKIKDLTDTCWQAMELSKVLHGRLNLL-LSKDpNvAEKYLTNVEKLKTWENINSFLKSIISIL 855
                 ***************************************************************.9999999**************************** PP

        SOG2 468 aliKelslmhelP..nevrpnLaslakatkevtvlLdlsSyk 507
                 a++K  +lm+elP  n++rpnLaslak+tk+vtv+LdlsSyk
  CCD25191.1 856 ANAK--ILMTELPhlNDIRPNLASLAKITKDVTVILDLSSYK 895
                 ****..***********************************7 PP

  == domain 3  score: -5.7 bits;  conditional E-value: 7
        SOG2 262 qsetsersasssg.vqssasstPlgegstsppgalsrqslsttgststltsssksrsss 319
                 q +++ +s+  ++   + +++t + ++++++ ++l++q+   t++++ + + ++ ++s+
  CCD25191.1 906 QAQAQSQSQAPAQaQGQGHNQTQMYSNTQAQ-AQLQQQQIPITKDSHVPLLTPQVKMSN 963
                 1111111111111122222222222222222.222222222223333333333333322 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   1.5   5.1e-11   1.3e-07      11      61 .]      44      93 ..      37      93 .. 0.90
   2 !   20.4   3.3   1.2e-07   0.00031       1      61 []     104     166 ..     104     166 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 5.1e-11
                S--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8 11 NrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61
                  +t++ de  + l++++ L+L+ N +t+l p +f+ L++Lr+LdL +N L
  CCD25191.1 44 LEITKITDEDVSFLRSVERLSLRKNHITSL-PSTFHELKNLRYLDLHSNSL 93
                5689999999999*****************.9*****************87 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.2e-07
                 TT-SEEE-TTS--SEE-TTSSTT.-TT--EEE--SS---G.GGGGGGTT--S-.EEE--SS-- CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkg.lsnLkvLdLsnNlltt.lspgafsgLpsLrsLdLsgNrL 61 
                 p+L+++d s+N++++l+ e  +   +nLkvL+L+nN ++t  s +++  L++L  L +++N +
  CCD25191.1 104 PQLEIVDFSSNKIKNLPEEISTLwKQNLKVLSLKNNDISTiYSLKSIIYLENLSVLEIDQNSI 166
                 7899*****************99678**************7899*****************86 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   1.6     8e-10   2.1e-06       3      43 ..      60      97 ..      58      98 .. 0.88
   2 !   28.1   1.8   7.3e-10   1.9e-06       1      40 [.      81     120 ..      81     126 .. 0.87
   3 !   16.4   1.8   3.6e-06    0.0093       1      39 [.     129     166 ..     129     174 .. 0.86
   4 ?   -3.5   0.1       6.6   1.7e+04      22      33 ..     832     843 ..     825     857 .. 0.58

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 8e-10
                --EEE--SS---E-S-.HHH-TT--EEE-.-S-----GGGGX CS
       LRR_4  3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdldeLk 43
                 e L+L+ N++t++p+ +  l+nL++LdL++N    +l+e++
  CCD25191.1 60 VERLSLRKNHITSLPStFHELKNLRYLDLHSN----SLSEIP 97
                689*************9888*********889....777665 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 7.3e-10
                 SS--EEE--SS---E-S-..HHH-TT--EEE-.-S-----GG CS
       LRR_4   1 pnLevLdLsnNqltdipl..leklpnLkeLdLsgNnlitdld 40 
                 +nL++LdL++N l++ip+  l+ +p+L+ +d s+N +i++l+
  CCD25191.1  81 KNLRYLDLHSNSLSEIPSviLQ-CPQLEIVDFSSN-KIKNLP 120
                 79****************9666.*********999.776663 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 3.6e-06
                 SS--EEE--SS---E-S-HH...H-TT--EEE-.-S-----G CS
       LRR_4   1 pnLevLdLsnNqltdiplle...klpnLkeLdLsgNnlitdl 39 
                 +nL+vL+L nN +++i +l+    l nL +L + +N    ++
  CCD25191.1 129 QNLKVLSLKNNDISTIYSLKsiiYLENLSVLEIDQN----SI 166
                 79*************999777768*********888....55 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 6.6
                 -TT--EEE-.-S CS
       LRR_4  22 lpnLkeLdLsgN 33 
                 l+n ++L  ++N
  CCD25191.1 832 LTNVEKLKTWEN 843
                 667776665444 PP

>> PRD  PRD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.8   1.5e-05     0.039      18      86 ..     357     425 ..     341     428 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.5e-05
                 CHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTST--HHHHHHHHHH CS
         PRD  18 dslyerLitHlkfaieRlkegitienplleeikekypkefeiakeileeleeeldielpedEiaylalh 86 
                  sl+++   H+  ++e l++ ++ enp  e + +    +  i k+i++ l ++++  + +d+++++ ++
  CCD25191.1 357 VSLLYSVRSHIDNLVEVLQQAENDENPQDEALIKLCMIIISIFKKIIALLRKNFETFFENDDLCFVRMF 425
                 678899999*******************************************************99875 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.13   3.2e+02       3      16 ..      58      71 ..      56      72 .. 0.89
   2 ?    1.1   0.4      0.21   5.5e+02       4      15 ..      82      93 ..      79      94 .. 0.84
   3 ?    4.1   0.0     0.023        60       2      16 ..     103     117 ..     102     118 .. 0.89
   4 ?    5.2   0.4    0.0098        25       3      16 ..     129     142 ..     128     143 .. 0.91
   5 ?    0.3   0.0      0.39   9.9e+02       5      18 ..     760     773 ..     759     774 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.13
       LRR_6  3 thLteLdLsgNdIg 16
                ++++ L+L+ N+I+
  CCD25191.1 58 RSVERLSLRKNHIT 71
                68899********8 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.21
       LRR_6  4 hLteLdLsgNdI 15
                +L++LdL +N +
  CCD25191.1 82 NLRYLDLHSNSL 93
                8******99976 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.023
       LRR_6   2 nthLteLdLsgNdIg 16 
                 ++ L+ +d s+N+I 
  CCD25191.1 103 CPQLEIVDFSSNKIK 117
                 889**********97 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.0098
       LRR_6   3 thLteLdLsgNdIg 16 
                 ++L+ L+L+ NdI+
  CCD25191.1 129 QNLKVLSLKNNDIS 142
                 79***********7 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.39
       LRR_6   5 LteLdLsgNdIgDe 18 
                 ++++++ +N+++ e
  CCD25191.1 760 VKTVNVVYNQLTAE 773
                 589********987 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.23     6e+02       3      20 ..      61      77 ..      59      80 .. 0.74
   2 ?    8.1   0.8    0.0019       4.8       1      17 [.      82      98 ..      82     123 .. 0.81
   3 ?    2.7   0.2      0.11   2.9e+02       1      14 [.     130     143 ..     130     150 .. 0.84
   4 ?    0.6   0.0      0.57   1.5e+03       1      19 [.     155     173 ..     155     176 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.23
       LRR_1  3 rhLdLsnnpllglppnsf 20
                ++L L+ n+++  +p++f
  CCD25191.1 61 ERLSLRKNHIT-SLPSTF 77
                89********6.555555 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0019
       LRR_1  1 nLrhLdLsnnpllglpp 17
                nLr+LdL +n+l+ +p+
  CCD25191.1 82 NLRYLDLHSNSLSEIPS 98
                8***********55554 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.11
       LRR_1   1 nLrhLdLsnnpllg 14 
                 nL++L L nn ++ 
  CCD25191.1 130 NLKVLSLKNNDIST 143
                 8*********9854 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.57
       LRR_1   1 nLrhLdLsnnpllglppns 19 
                 nL +L + +n++++ + ++
  CCD25191.1 155 NLSVLEIDQNSIPQEELEA 173
                 8999*******98877665 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   5.2e-05      0.13      75     153 ..      45     117 ..      35     125 .. 0.88
   2 ?    9.0   1.0   0.00037      0.94      66     126 ..     106     167 ..     103     178 .. 0.71
   3 ?   -1.5   0.2      0.61   1.6e+03      62      97 ..     847     882 ..     831     901 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.2e-05
       LRR_9  75 rivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpvtnkkeyrlyviyklkqlrlldfrkvklk 153
                  i++i+++   +l ++e l l +n++++l     + +lk+l++l l +n++++ +     vi + +ql ++df   k k
  CCD25191.1  45 EITKITDEDVSFLRSVERLSLRKNHITSLPS--TFHELKNLRYLDLHSNSLSEIPS----VILQCPQLEIVDFSSNKIK 117
                 68999999999******************98..899****************9985....999**********866655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00037
       LRR_9  66 lktlllnnnrivriaegleevl.PnleelvltnnelqeladldPlaslkklellsllknpvt 126
                 l+++ +++n+i ++ e+++     nl+ l l nn +  +  l+ ++ l++l++l + +n++ 
  CCD25191.1 106 LEIVDFSSNKIKNLPEEISTLWkQNLKVLSLKNNDISTIYSLKSIIYLENLSVLEIDQNSIP 167
                 55666777788888777776542578888888888888888888888888888777777664 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.61
       LRR_9  62 llkrlktlllnnnrivriaegleevlPnleelvltn 97 
                 +lk + ++l n   ++   + l+++ Pnl +l    
  CCD25191.1 847 FLKSIISILANAKILMTELPHLNDIRPNLASLAKIT 882
                 333333333333333333455666666665554333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2048  (0.114228); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 6550.86
//
Query:       CCD25192.1  [L=333]
Description: hypothetical protein NDAI_0E03750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-38  132.2   0.0    8.2e-34  116.8   0.0    2.3  2  TFB6      Subunit 11 of the general transcription factor TFII


Domain annotation for each model (and alignments):
>> TFB6  Subunit 11 of the general transcription factor TFIIH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.8   0.0   4.6e-38   8.2e-34       1     117 [.     169     312 ..     169     314 .. 0.98
   2 !   15.0   0.1   8.5e-07     0.015     149     171 .]     310     332 ..     308     332 .. 0.91

  Alignments for each domain:
  == domain 1  score: 116.8 bits;  conditional E-value: 4.6e-38
        TFB6   1 GYeslkellkdldklvdvlWvS...................................gtpslqipyLlniaselldylekfppspra....tfklLrkL 60 
                 GYesl +llkdl++lvd++W+S                                   +t+++q++yL++ia++lldy+ekf++s+++    +fk+L++L
  CCD25192.1 169 GYESLVPLLKDLKTLVDFIWYSidnsnphtdyllktprsneyipsspednnnnsakiSTYFGQTSYLIKIADDLLDYIEKFKISNDDqvvkIFKFLFIL 267
                 9************************************************************************************999999******** PP

        TFB6  61 DkiFasLlaGeDvetgetlpGfeeglragmstTdkVRlksivertRvlvvevleree 117
                 DkiF++Ll+G+       +pG      ++m+ Td+VRl++i+ertR++++ ++e+++
  CCD25192.1 268 DKIFIRLLNGQ-------IPGG-----HKMNLTDAVRLCGIAERTRMKLPIFFESQN 312
                 **********8.......****.....99***********************99985 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 8.5e-07
        TFB6 149 ededeelemevarvYektleklG 171
                 +++ +++++ev+++Ye+tl+k+G
  CCD25192.1 310 SQNIHGYHYEVSKIYEETLDKCG 332
                 56899*****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2432.70
//
Query:       CCD25193.1  [L=583]
Description: hypothetical protein NDAI_0E03760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-53  180.9   0.7    5.4e-36  124.3   0.1    2.9  3  Pkinase         Protein kinase domain
    1.3e-28  100.0   0.0    8.7e-24   84.2   0.0    2.2  2  Pkinase_Tyr     Protein tyrosine kinase
    1.4e-15   57.3   0.0    5.2e-15   55.5   0.0    2.1  1  FHA             FHA domain
    1.1e-07   31.0   0.1    2.9e-07   29.6   0.0    1.6  2  Pkinase_fungal  Fungal protein kinase
    1.8e-05   24.2   0.0       0.12   11.7   0.0    2.2  2  Kinase-like     Kinase-like
    0.00076   19.7   0.0     0.0088   16.3   0.0    2.3  2  Yop-YscD_cpl    Inner membrane component of T3SS, cytoplasmic
     0.0064   15.9   0.0      0.012   15.0   0.0    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.7   1.8e+03      48      90 ..     140     184 ..     125     206 .. 0.68
   2 !  124.3   0.1   2.1e-39   5.4e-36       5     168 ..     219     402 ..     216     415 .. 0.83
   3 !   53.7   0.0   7.1e-18   1.8e-14     171     264 .]     441     526 ..     432     526 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.7
                 HHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH CS
     Pkinase  48 Eikilkklkhpnivrlyevfee..kdelylvleyveggeladlle 90 
                 E ++   l+ + i++l ++f++  ++ + l++e  +  +++++ +
  CCD25193.1 140 ERNVAYLLNDNDIIELSSTFNTlsTSMINLFQEEGNPHSYFKFKS 184
                 777777888999999999999865555667777777777776665 PP

  == domain 2  score: 124.3 bits;  conditional E-value: 2.1e-39
                 EEEEEESSEEEEEEEETTTTEEEEEE....EEECHCHCHHHH.....HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHHH.. CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvK....kikkekakkkke.....kkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladlle.. 90 
                 + +G+G+fG+V+ a++k+ ++ +  K    +i   ++   k      ++v +E kil kl+hpni+++ ++f++  +d+lyl++++++gg+l+++l   
  CCD25193.1 219 KIIGNGTFGNVLVAFKKNLNDNINSKptgkIIYSPRNYAVKIvklkkNNVDKEAKILLKLNHPNIIKIHYTFSDiiNDNLYLFQDLIPGGDLFSYLAkg 317
                 689********99998887777665522215544443333335555599***********************************************965 PP

                 .HHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE...EEE-SGTTSEESSSSCS...BCTTTSCGGGS-HHH CS
     Pkinase  91 .rkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekge...lKitDFGlakelesssk...ltsfvgtseYlAPEv 168
                    +s++e+e   +++qil++l+ylH++gi+HrDlK +NiL+ + +    + ++DFG+ak +++ ++   ++++vgt+eY+APEv
  CCD25193.1 318 dCLTSITETESLILVYQILKALSYLHNQGIVHRDLKLDNILLCSPEPctrIVLADFGIAKDISKLKRnsrMNTIVGTPEYCAPEV 402
                 4334589999999*****************************9544467899********9988777788**************9 PP

  == domain 3  score: 53.7 bits;  conditional E-value: 7.1e-18
                 TSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 171 eneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 +n+y+ k+D+WslGv+   +ltg  pf+g+ +++++ +++++        g+ +++++++++i e+akd++++llk d ++R+   + l+h+++
  CCD25193.1 441 KNGYTYKCDLWSLGVVTHIMLTGISPFYGDGTENSIIQNVRN--------GKLDFSIKHWDHIHENAKDFVRNLLKIDANERFDSFQSLNHSWI 526
                 589*************************88888888888888........789****************************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   3.4e-27   8.7e-24       5     179 ..     219     405 ..     216     417 .. 0.83
   2 !   13.7   0.0   1.1e-05     0.028     180     250 ..     442     515 ..     420     524 .. 0.79

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 3.4e-27
                  EEEEEESSEEEEEEEEET...........TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkg...........ekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLl 89 
                  k +G+G+fG+V  +  k+           +   +  + avK++k      +k+++ +eaki+ kl+hpni+k++   +   +++l++  ++++gGdL 
   CCD25193.1 219 KIIGNGTFGNVLVAFKKNlndninskptgKIIYSPRNYAVKIVK-----LKKNNVDKEAKILLKLNHPNIIKIHYTFSdiINDNLYLFQDLIPGGDLF 311
                  679*********99999977765543333222334455666663.....34567889*****************9999888999************** PP

                  HHHHHT.CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHH CS
  Pkinase_Tyr  90 kfLrkk.ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslke 179
                  ++L k    +++t ++ l +++q+ k+++yL+++ +vHrdl   N+Ll++    + + ++DfG+a+di+k ++ ++ ++     +++apE+ ++
   CCD25193.1 312 SYLAKGdCLTSITETESLILVYQILKALSYLHNQGIVHRDLKLDNILLCSpepCTRIVLADFGIAKDISKLKRNSRMNTIVGTPEYCAPEVGFK 405
                  ***9973467889999999******************************9444347789*********9888888888889999******9765 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.1e-05
                  SEEEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHHHHTTEE...S-BBTTSBHHHHHHHHHHT-SSGGGS- CS
  Pkinase_Tyr 180 kkftsksDvWsfGvllwEiftlgespypgl.kneevleklkegkr...lekpekcpeelyelmkkcweedpeeRp 250
                  + +t k D Ws Gv+++ ++t g sp+ g  +++++++++++gk    +++ ++++e+ ++++++ ++ d++eR 
   CCD25193.1 442 NGYTYKCDLWSLGVVTHIMLT-GISPFYGDgTENSIIQNVRNGKLdfsIKHWDHIHENAKDFVRNLLKIDANERF 515
                  449************997777.8888666659999*****99875444777888888888888888888888885 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0     2e-18   5.2e-15       2      68 ..      85     155 ..      84     156 .. 0.92

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 2e-18
                 EEESS.TTSSEETTSTTSTTTEEEE...EEETT.CEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEE CS
         FHA   2 tiGRs.sdcdivlddpsiSrkHali...kfdkg.sgkvyleDlgSknGtfvNgqrigkgepveLksgdviel 68 
                 +iGR+ ++ d+ l+dps+S  H++i    fd++  + +y++Dl S nGtfvN +r++++  + L+++d+iel
  CCD25193.1  85 KIGRNtKEVDFLLNDPSVSSIHCIIwaiLFDEKsIPMCYIKDL-SLNGTFVNSKRLERNVAYLLNDNDIIEL 155
                 8****999****************877755555699******9.9*************************98 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.63   1.6e+03      99     158 ..      29      90 ..      20      91 .. 0.69
   2 !   29.6   0.0   1.1e-10   2.9e-07     307     388 ..     327     405 ..     316     420 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.63
  Pkinase_fungal  99 rvvlglllmdddeLGlDptiv..tesdgrrsyeikaeeeketekleleeplarqraivgRgT 158
                     +  + l  ++ +eLG  ++i   + s++++s+  ++e+++  ek+ + ++  ++   +gR T
      CCD25193.1  29 EHSTTLHGITTEELGSGDSINesILSNDDSSFPQQQEQQQGGEKISILKICKHKTLKIGRNT 90 
                     55566667788999999999776444444444446888888899999888888887778877 PP

  == domain 2  score: 29.6 bits;  conditional E-value: 1.1e-10
  Pkinase_fungal 307 ellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                     e l  +++ +k++  L+ ++gi+HrD   +Nil++    e+  + +L+D+ +ak++s+ +++s  ++ +GT+e+ a ev  +
      CCD25193.1 327 ESLILVYQILKALSYLH-NQGIVHRDLKLDNILLC--SPEPCTRIVLADFGIAKDISKLKRNSRMNTIVGTPEYCAPEVGFK 405
                     55667788999******.*****************..5678899******************************99887554 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00012       0.3     147     221 ..     329     406 ..     316     419 .. 0.74
   2 !   11.7   0.0   4.6e-05      0.12     213     288 .]     431     514 ..     428     514 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
  Kinase-like 147 lllTlqlirlaanLqakglvhgkftvdnlll...dekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytr 221
                  l+l  q+++   +L+++g+vh +++ dn+ll   ++  +++l +f+      +  + s ++     pE ++   g+++
   CCD25193.1 329 LILVYQILKALSYLHNQGIVHRDLKLDNILLcspEPCTRIVLADFGIAKDISKLKRNSRMNTIVGTPEYCAPEVGFKT 406
                  68889999**********************944446678899999765555554454555555666777777766655 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.6e-05
  Kinase-like 213 lgsrggytrknktkmthkldaWqlGlviyriwclklPltlateeakeew.........kfklckkipekvkaLlkkfLqlsqedR 288
                  ++++++ ++  k  +t+k d W lG+v   +     P+  +  e ++           + k+  +i e+ k  ++++L+ + ++R
   CCD25193.1 431 CSRANTIEQ-YKNGYTYKCDLWSLGVVTHIMLTGISPFYGDGTENSIIQnvrngkldfSIKHWDHIHENAKDFVRNLLKIDANER 514
                  566666444.7789***********************976644433322357777766888999999999999999999999988 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.4e-06    0.0088      15      82 ..      80     156 ..      68     164 .. 0.77
   2 ?    0.4   0.0      0.32   8.2e+02      25      49 ..     363     388 ..     344     398 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.4e-06
                   TTEEEEEES-TT.-SEE---TTS-TT-EEE...EEETTEEEEEE..-CESS--EETTEE-SECC...--TTSEEEET CS
  Yop-YscD_cpl  15 eegevviGsded.cDivLsDkevsrkhlkL...eveeesvrled..lgsrngllvngerveele...lrpgdvlelG 82 
                   +++++ iG++ +  D +L+D++vs+ h+ +    ++e+s+ + +    s ng++vn++r e+     l+++d +el 
    CCD25193.1  80 KHKTLKIGRNTKeVDFLLNDPSVSSIHCIIwaiLFDEKSIPMCYikDLSLNGTFVNSKRLERNVaylLNDNDIIELS 156
                   678999*****99**************98622246788876544114689**********94444779999999875 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.32
                   TT.-SEE---TTS-TT-EEEEEETTE CS
  Yop-YscD_cpl  25 ed.cDivLsDkevsrkhlkLeveees 49 
                   e    ivL D ++++   kL+++++ 
    CCD25193.1 363 EPcTRIVLADFGIAKDISKLKRNSRM 388
                   553469*************9998765 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.5e-06     0.012      94     174 ..     299     381 ..     274     390 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.5e-06
         Kdo  94 llterlegaqdLedllakwae...laeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlr 174
                  l  +l +  dL  +lak++    + e+    l+ ++ ++ + lh+ g+ H+dl   nill   e    +i+l D+  a+  ++
  CCD25193.1 299 YLFQDLIPGGDLFSYLAKGDCltsITETESLILVYQILKALSYLHNQGIVHRDLKLDNILLCSPE-PCTRIVLADFGIAKDISK 381
                 566667777788888888777755666666677899999************************97.999999999987766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       557  (0.031067); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4406.15
//
Query:       CCD25194.1  [L=469]
Description: hypothetical protein NDAI_0E03770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3440  (0.191868); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.31s 00:00:01.21 Elapsed: 00:00:00.46
# Mc/sec: 3061.05
//
Query:       CCD25195.1  [L=661]
Description: hypothetical protein NDAI_0E03780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-16   61.0   6.6    1.2e-16   61.0   6.6    4.4  5  MNE1      Mitochondrial splicing apparatus component


Domain annotation for each model (and alignments):
>> MNE1  Mitochondrial splicing apparatus component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.028     5e+02      29      87 ..      82     133 ..      61     137 .. 0.79
   2 ?   -1.6   0.3      0.13   2.4e+03     109     132 ..     257     280 ..     215     287 .. 0.64
   3 ?    0.7   1.5     0.027   4.8e+02      98     139 ..     308     350 ..     268     354 .. 0.71
   4 !   61.0   6.6   6.7e-21   1.2e-16       1     127 [.     404     535 ..     404     563 .. 0.90
   5 ?   -1.0   0.1     0.084   1.5e+03      16      51 ..     574     607 ..     556     660 .. 0.67

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.028
        MNE1  29 eeeaseslktlfinciLnhlaveknfggvvsaleklvkelnlqsllnssnligsldnsg 87 
                 +++ s++++tl +  iL +l+   + + + s    l++       lns+  i++++++g
  CCD25195.1  82 KKTGSKNTITLNLPQILRTLQILRSSDQTRSYFILLNR-------LNSTERINWISQNG 133
                 45788999999999999999999999988888888888.......88888888887765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.13
        MNE1 109 FkfLkkskfeltksdYlllikaal 132
                  +f +k+   +  ++Y++++++  
  CCD25195.1 257 LSFYEKTYQIFKLKNYISMLSSFE 280
                 344455455566667777776665 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.027
        MNE1  98 SssakltsltLFkfLkks.kfeltksdYlllikaalrgkdhdl 139
                 S+    t  ++F+ L+++ ++++ ++dY ++++ + ++  +++
  CCD25195.1 308 SNNMEETCIQFFDKLTRDwNYKMLDHDYNVILEMIEKYGSYKF 350
                 5556668889999999988999999999999888777665555 PP

  == domain 4  score: 61.0 bits;  conditional E-value: 6.7e-21
        MNE1   1 ilssklgnvlanlevlkefieehlkymkeeeaseslktlfinciLnhlaveknfggvvsaleklvkelnl.qsllnssnligsldnsgfhillksvsnS 98 
                 +l+ kl+ +  nl+ +++f+++ l +++++ + +++k +++n+i++h+a+  ++g+++ +le++ ++lnl   ll+ +     + n+ +h ll+s++  
  CCD25195.1 404 FLQCKLPPLYTNLKGWEDFFHSLLPTLRSSAITQNTKNFIMNLIISHVASDRSLGFMLLFLEHITYQLNLpTLLLSFQENRTVILNQLYHSLLRSMAVN 502
                 67899*****************************************************************999999999999***************76 PP

        MNE1  99 ssa.kltsltLFkfLkks...kfeltksdYlll 127
                  sa +l+ ++LF+++k++   +f ++++d +++
  CCD25195.1 503 PSAnRLSLFHLFNWIKQNeldSFYFSEQDLKSI 535
                 665278999********9888888888876655 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.084
        MNE1  16 lkefieehlkymkeeeaseslktlfinciLnhlave 51 
                 l++++    +++ +++  e+l +  i+++L +++  
  CCD25195.1 574 LETLV--SNNTKINNNQTENLTAVQIETVLLQVSGP 607
                 55555..34445555777888999999999888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       969  (0.0540465); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4726.30
//
Query:       CCD25196.1  [L=1126]
Description: hypothetical protein NDAI_0E03790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0017   18.2   0.4     0.0082   16.0   0.0    2.4  2  TFCD_C    Tubulin folding cofactor D C terminal
     0.0034   17.3   1.7      0.013   15.4   0.2    2.7  2  Mistic    Membrane-integrating protein Mistic
  ------ inclusion threshold ------
       0.17   12.0   6.6        4.1    7.5   0.2    3.2  3  ANAPC5    Anaphase-promoting complex subunit 5


Domain annotation for each model (and alignments):
>> TFCD_C  Tubulin folding cofactor D C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.44   2.7e+03      77     144 ..     243     310 ..     200     343 .. 0.70
   2 !   16.0   0.0   1.4e-06    0.0082      69     176 ..     874     993 ..     836    1001 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.44
      TFCD_C  77 peyresvleGlvvSvGglteslvkassqaLleylkeles..kadeeeleslleeliklleenkkddRvvv 144
                 +++   +l     S+++ + + ++   + L +++    +   ++ + le++++ +++ ++++ +d R+++
  CCD25196.1 243 EKLTCFILNSASASASSSSSNRMNILNKLLPKLFI--LNgyFENWDALEQIISWYLSHFSNQSTDTRFII 310
                 55555555555556666555555555555555552..222455777788888888888888888888887 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 1.4e-06
      TFCD_C  69 rlvqLLql.........peyresvleGlvvSvGglteslvkassqaLleylkeleskadeeeleslleelikll....eenkkddRvvvPllktldlLl 154
                 + +qLL +           y+++  +G++++ G++   + +  +++L+e+++ ++++++++e  +l++elik+     e  +++ ++++  l++ ++L+
  CCD25196.1 874 IHCQLLTFydeeyikdnTIYMRNFWKGYMMTLGAVH-ATDEDLTESLNEFIRFYNNRTSNDEKLELCNELIKIIpratELTQENLKFTIISLNFWERLF 971
                 5577776655555554456***************87.8999**********9999999****************88767777888999*********** PP

      TFCD_C 155 esgvleelaeeessflekllkl 176
                 +sg+   ++ + ++++ kl++l
  CCD25196.1 972 QSGIRWPFEFNIKGVYAKLYNL 993
                 **99766666655666666666 PP

>> Mistic  Membrane-integrating protein Mistic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   2.2e-06     0.013      11      48 ..     914     951 ..     908     957 .. 0.91
   2 ?   -0.9   0.1      0.28   1.7e+03      59      72 ..    1037    1050 ..    1031    1052 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.2e-06
                 TTTHHHHHHHHH--SSS-SS-SS-SHHHHHHHHHHHHH CS
      Mistic  11 kmnegldafieLYNeseedkpliefeeevleaiekAke 48 
                  + e+l+ fi +YN+  ++ + +e+ +e ++ i +A+e
  CCD25196.1 914 DLTESLNEFIRFYNNRTSNDEKLELCNELIKIIPRATE 951
                 489*********************************97 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.28
                  HHHHHHHHHHTTTS CS
      Mistic   59 iNtivkevLsfldl 72  
                  +Nti+k +L +++ 
  CCD25196.1 1037 VNTIIKRLLVLIQR 1050
                  8********99876 PP

>> ANAPC5  Anaphase-promoting complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2   0.00068       4.1      34      88 ..     167     221 ..     135     225 .. 0.86
   2 ?   -3.2   0.0       1.6   9.3e+03      56      85 ..     558     587 ..     544     593 .. 0.72
   3 ?    6.3   0.7    0.0017        10      12      59 ..     610     660 ..     607     667 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00068
      ANAPC5  34 ssqkksyqyalLnlaslhadfghneeAvkaleeairlArenkDkscLalalawla 88 
                 s +++++ + +L+  + + +f ++e++ + +e +++   +n+D  +L++ l  l+
  CCD25196.1 167 SFKNNQLFITILCQIRAQLYFKNKEKSKHDIEKVTSNPEQNEDLLTLNYYLKLLI 221
                 4447889999***************************************998775 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
      ANAPC5  56 hneeAvkaleeairlArenkDkscLalala 85 
                  n++  ++++  i+  + +kD   L+l  a
  CCD25196.1 558 FNAKLFQRIQQFIKAGKSSKDRYQLQLDSA 587
                 555667889999999999999999987655 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0017
      ANAPC5  12 kdYqqaldsL...hryFDyvlsqnessqkksyqyalLnlaslhadf.ghnee 59 
                 ++Y + ld+L   ++ FD++  +++ ++++ +qy ++ l ++ ++f +++e+
  CCD25196.1 610 QKYRNFLDELitnFKAFDIFKRHRNINSNRLFQYTVI-LKIFIYHFaSNYEQ 660
                 67999999994334667**********9******987.45556666244444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 7511.19
//
Query:       CCD25197.1  [L=621]
Description: hypothetical protein NDAI_0E03800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.3e-131  439.5  38.1   1.5e-131  439.3  38.1    1.0  1  AA_permease    Amino acid permease
    4.1e-20   72.0  41.6    5.5e-20   71.6  41.6    1.0  1  AA_permease_2  Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.3  38.1  1.7e-135  1.5e-131       1     474 [.     104     576 ..     104     581 .. 0.98

  Alignments for each domain:
  == domain 1  score: 439.3 bits;  conditional E-value: 1.7e-135
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.....ksggfytyasrflgpelGfviGlnylfswitvlale 93 
                  h+++ialgg iGt l+vg++++l+++Gp+g++++yl++ ++++ +m++lge++++ p     ++g+++++++++++p+lGf+ ++ny +++++ +a+e
   CCD25197.1 104 HIQLIALGGTIGTSLLVGTSSALANCGPAGLFISYLIISTFVYPIMNALGEMVCFLPgngsdSAGSAAHLVHKYVDPSLGFAASWNYYYCFVILVAAE 201
                  99*******************************************************9999999********************************** PP

  AA_permease  94 ltaasiliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga..gfrflgdngsifknnlppg 189
                  + aas +i++w   +++p + +++++fl +++i+n++ v vyge ef++a+iki++i ++ii+++il +gg+p+ +   gfr+++++gs f++++++g
   CCD25197.1 202 VSAASGVIEYWAWAEHVP-KGAWITIFLSLIVILNFLPVNVYGESEFWFASIKILCITGLIILSFILFWGGGPKSDGilGFRYWKNPGS-FAHHITGG 297
                  ******************.*****************************************************999989***********.66666666 PP

  AA_permease 190 fakeeegafknfisvfvivvfaft.GielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.....aspfvifik 281
                      ++g+f++++ +++   f+   G elv+++++E++d +++i ka +++v+r+++fY+l++l+ig++v +nd+ l n+ a+      +spfvi i+
   CCD25197.1 298 ----GGGNFLDIYTGIIKGGFSVIlGPELVCLTSSECADQRRNIAKASKRFVWRLMFFYILGSLSIGVIVAYNDPVLQNALAQSkagagSSPFVIGIQ 391
                  ....7*****************999******************************************************99999************** PP

  AA_permease 282 esgvsvlaplinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaligliv 379
                  ++g++++++++n++ilt+a+s++n++++++sR l ++a++g aPk++ ++++ gvP+ a+ +s+++s+la+l+ s+++a   vfn++++is+++g+i 
   CCD25197.1 392 NAGIRAVPHIVNFCILTSAWSAGNAYMFASSRSLLTMARNGNAPKIFCRINQLGVPYTAVGASLLLSCLAYLNVSSSTA--DVFNWFSNISTISGFIG 487
                  *******************************************************************************..***************** PP

  AA_permease 380 wlliilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                  w++++++y+rfRka+ y++  + +++f+a ++ ++ ++ l+ +++i+l+++++++++      +w++ +f+aay+++++f+++++g+k+++++ +
   CCD25197.1 488 WICACVAYIRFRKAITYNKLTH-RIPFRAKGQQYTIWYSLFWVSLITLTNGYAIFIP-----RNWNVKDFIAAYITLPIFIVLWIGHKVFTRTLL 576
                  ****************999955.**********************************.....****************************99865 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6  41.6   6.1e-24   5.5e-20       9     424 ..     108     561 ..     103     565 .. 0.73

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 6.1e-24
  AA_permease_2   9 lvigsvigsgifvkn..laasggpa.lilwvwiavligslavllvyaElssalprsgGiyvytkaaf.....gkkvaflsawfnwfayvpvlasil 96 
                    +++g +ig+  +v +  ++a+ gpa l+++++i +  ++++ + ++ E+ + lp +g ++  ++a        + ++f ++w + +++v+ +a+ +
     CCD25197.1 108 IALGGTIGTSLLVGTssALANCGPAgLFISYLI-ISTFVYPIMNALGEMVCFLPGNGSDSAGSAAHLvhkyvDPSLGFAASWNYYYCFVILVAAEV 202
                    566777776665555566999999954444444.4444589999999*95558888888765554433333377778***********99887777 PP

  AA_permease_2  97 svaasyllna.lgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl............stet 179
                    s+a + + ++ +++++ +  w+t+     +l l++++n + ++ ++   ++ + +kil  ++ liil +i++ ggg  s             s+++
     CCD25197.1 203 SAASGVIEYWaWAEHVPKGAWITI-----FLSLIVILNFLPVNVYGESEFWFASIKIL-CITGLIILSFILFWGGGPKSDgilgfrywknpgSFAH 292
                    777777755424555544444444.....5899999*********************6.5566666666666555555455999776655543333 PP

  AA_permease_2 180 dtffpngwpg...vllgllivlwsfdGfesaanvsee.vkk.kdvpkaifigllivlvlyllvniaflgvvpddei..........anlsnlgsva 260
                    + + ++g ++   + + + + + ++ G e ++  s+e + + +++ ka    +   +++y+l ++++  +v  +            a  +   s++
     CCD25197.1 293 HITGGGGGNFldiYTGIIKGGFSVILGPELVCLTSSEcADQrRNIAKASKRFVWRLMFFYILGSLSIGVIVAYNDPvlqnalaqskA--GAGSSPF 386
                    32333344443414555666899999***********9555599*****99999999999997777666555544334777765321..2223469 PP

  AA_permease_2 261 alffeavggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvssl 356
                     +  +++g ++v +iv+++i  s++ a+n+++++ssr l  +ar g  P+ f ++n+ g p+ a+  ++++s++ +l ++ ++++ +n+ +++s++
     CCD25197.1 387 VIGIQNAGIRAVPHIVNFCILTSAWSAGNAYMFASSRSLLTMARNGNAPKIFCRINQLGVPYTAVGASLLLSCLAYLNVSSSTADVFNWFSNISTI 482
                    9999************************************************************************9999888************* PP

  AA_permease_2 357 gliisyllliigalilrkk..rphl.kr........pgkilvaiigalfllfllvalffppkgpatqssliytiiltva 424
                    + +i ++ + ++++  rk    ++l  r         + i+ +++++ +++++   ++f+p + ++++ ++  i l ++
     CCD25197.1 483 SGFIGWICACVAYIRFRKAitYNKLtHRipfrakgqQYTIWYSLFWVSLITLTNGYAIFIPRNWNVKDFIAAYITLPIF 561
                    ******9999999877765223333444654444443336688888888887777777777888888888777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 4340.07
//
Query:       CCD25198.1  [L=1172]
Description: hypothetical protein NDAI_0E03810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.6e-103  343.7   0.1   1.2e-102  342.8   0.1    1.4  1  DNApol_Exo  DNA mitochondrial polymerase exonuclease domain
    3.5e-54  184.3   0.0      7e-54  183.3   0.0    1.4  1  DNA_pol_A   DNA polymerase family A


Domain annotation for each model (and alignments):
>> DNApol_Exo  DNA mitochondrial polymerase exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.8   0.1  1.4e-106  1.2e-102       2     282 .]     107     403 ..     106     403 .. 0.94

  Alignments for each domain:
  == domain 1  score: 342.8 bits;  conditional E-value: 1.4e-106
  DNApol_Exo   2 evefklPkLegenieeHfrklgekqaepylslaeelaeaelpeipekwalksGWtrYekdksaesvdyPeeealvfDvevlvkesklpvlAvavsekaW 100
                 +++f+lPkL+g++++eHf+klg+  +epy+++a + + ++++++p +w+ ++GWtrYe++k++e+v+yP+e+++vfDve+++k s++p+lA+avs+kaW
  CCD25198.1 107 PISFELPKLQGNSLDEHFQKLGHFASEPYKTMALNKF-TTIIPKPLQWVRTPGWTRYEPNKKPEQVPYPKETTIVFDVETMYKLSPYPTLATAVSDKAW 204
                 689*****************************99988.68999******************************************************** PP

  DNApol_Exo 101 YsWvSprlleeseeeeklelkeLiplessk.kervvvGhnvsyDRarikeeYslessktrflDTmsLhvavsGltsqqralwlkarkekkkkekaaeee 198
                 YsW+Sp++++ ++++++ e+k+L+pl++++ ++r+++Ghnv+yDRar++eeY+ + skt+flDT sLhva+sGl+s+qr+++ +++k++k  e+++++ 
  CCD25198.1 205 YSWCSPYICDADTTNDSDEIKHLVPLGDNTtTPRLIIGHNVGYDRARVLEEYNFKPSKTFFLDTQSLHVATSGLCSRQRPMFVQMKKKRKLLEEEEAKV 303
                 **************************976659*****************************************************99999888777654 PP

  DNApol_Exo 199 eeeee................kkeeeseeeekewkevsslnsLadvaklycgieldKekrdlfvketleeirenfqelleYcakDveathevfkkllpk 281
                 ee+ +                ++ ++ eeee+ w +vs++nsL+dva ++cgi++dKe rd+f++ + + + enfq+l++Yc++Dv at +vf k+l  
  CCD25198.1 304 EESMRtttetedtdgitgistSSLNNLEEEEDPWLNVSTMNSLSDVALFHCGIKMDKEPRDYFASLDKTIVVENFQKLMTYCSDDVDATSRVFDKVLRM 402
                 444435667888899999987777778888888***************************************************************998 PP

  DNApol_Exo 282 F 282
                 F
  CCD25198.1 403 F 403
                 7 PP

>> DNA_pol_A  DNA polymerase family A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.3   0.0   7.8e-58     7e-54      71     371 ..     614     987 ..     574     990 .. 0.87

  Alignments for each domain:
  == domain 1  score: 183.3 bits;  conditional E-value: 7.8e-58
                 CHHHHHHHHHHHHHHHHHT..TTTGGGCC.....BTT.TSEE--EEE......................SSSSSSSS-EEESS-GGGS-TTS....... CS
   DNA_pol_A  71 plaklileyrelsklksty..vdallkli.....nkk.tgrihtsfn......................qtvtatGrlsssepnlqnipirt....... 132
                  l k +++++e + lks    ++++l+++     ++  ++ri ++f+                      ++  +   ++++ ++++++  r+       
  CCD25198.1 614 LLSKPYIHFFEKGVLKSDSelAHQALNMNssgsyWMAaRERIKSQFVvsrkdfpdqfqelsssssvdafNEQDNLAIILPTVIPMGTVTRRAventwlt 712
                 46788999999999999544499999999*****888799*****************************99*****************74557778888 PP

                 ...CCHHHH....HHTBCG.TTCCEEEEEEETTHHHHHHHHHCT.HHHH....HHH.........HTTH-HHHHHHHHHCTS.GGGHHHHHHHHHHHHH CS
   DNA_pol_A 133 ...eegrri....RkafvaeegghvllsaDysqiELRilAhlsgdekli....eaf.........kegeDiHsktAsevfgvpveevtkeqRrqaKain 211
                     +g+ri    +++++a++g++ +++aD+++ EL+i A+l+gd+ +     +a+         +eg+D+H+ktA+ ++++         R++aK++n
  CCD25198.1 713 asnAKGNRIgselKTLIKAPKGYC-FVGADVDSEELWI-ASLVGDSVFNihggTAIgwmclegtkNEGTDLHTKTAQILGCS---------RNEAKIFN 800
                 8664444555555********776.*************.*********9999977788888998566**************9.........******** PP

                 HHHHTT--HHHHHHHHT.....SSHHHHHHHHHHHHHHSHHHH...............HHHHHHHHHCCCE.CCEEETTCSEEEECTTT-CCHCCCHHH CS
   DNA_pol_A 212 fGiiYGagakgLaeqlg.....iseeeAkefiekyferypgvk...............syleetleeakek.gyvetllgrrrylpeiksknaalreka 289
                 +G+iYGag k++ + l+     + +eeAke++ k++e+++g +               s+l+++le+++e+ +  +++lg+ ++  ++ ++n + ++  
  CCD25198.1 801 YGRIYGAGVKFAGQLLKrfnpsLGDEEAKETAIKLYENTKGKTkrskifkkfwfggseSILFNKLESIAEQdEAKTPVLGCGITT-SLMKRNLKSNS-F 897
                 ****************6667779*****************988899999999999999*************999*********99.78778877745.5 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEETTEEEEEEECCCHHHHH......HHHHHHHHHHHH.S...SS--EEEEEEE CS
   DNA_pol_A 290 eraavNapiQGsAaDiiklamikieealkeeklkarlllqvHDElvfevpeeeveeva......elvkeamesave.l...dvplkvevkvG 371
                   +++N++iQ+s++D+++l+++++ +++++++l+arl +++HDE+++ ++e+++++va      +++++a+   +e +   d+p++++++++
  CCD25198.1 898 LPSRINWAIQSSGVDYLHLLCCSMTYLIAKYNLNARLTISIHDEIRYLASEKDKYKVAmalqisNIWTRAI--FCEqMgidDLPQNCAFFSA 987
                 9*********************************************************9999999999998..3333255699999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 8461.08
//
Query:       CCD25199.1  [L=462]
Description: hypothetical protein NDAI_0E03820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-06   27.4   2.6    3.6e-06   26.5   2.6    1.4  1  CorA          CorA-like Mg2+ transporter protein
  ------ inclusion threshold ------
      0.049   13.9   3.4        0.1   12.8   3.4    1.6  1  DNAJ_related  DNA-J related protein


Domain annotation for each model (and alignments):
>> CorA  CorA-like Mg2+ transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   2.6   4.1e-10   3.6e-06     126     286 ..     209     370 ..     169     376 .. 0.63

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4.1e-10
        CorA 126 llekleeel..deledeledstkkeilrelaqlrrr.lvklrralapnrevlkrllakaddkllddedkeylrdlldelerllemlealrerleslqdt 221
                 +l +le e+  ++l d l +s+k +++ + + l r+ l +l ++  ++  ++ ++++++dd+  d e+  +l++ + + +  ++++ +l + + s  ++
  CCD25199.1 209 ILNELENEVnrEKLRDLLIKSKKLSLFYQKSLLVRQvLDELLESDEDLASMYLSVHRTEDDDFADLEM--LLETYYTQCDEYVQQAASLIQDIKSTEEI 305
                 33333333211234444433333333333333222224445555555555555555555555555555..88888888888999999999999999999 PP

        CorA 222 yssllserlNrvmkvL...TvltaiflPlTlitGiyGmNfkglPelewsygypfvlllglmallaill 286
                  + +l+ + N +m +    T+ t  f+ +Tl+  +yGmN k+    e+  g+++v  ++l++++a ++
  CCD25199.1 306 VNIILDANRNSLMLLElkvTIYTLGFTVATLLPAFYGMNLKN-FIEESYLGFGAV--VFLSIVSAFMV 370
                 9999**9999999752344*******777************6.444444444555..55555555443 PP

>> DNAJ_related  DNA-J related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   3.4   1.1e-05       0.1      44     127 ..     197     284 ..     171     285 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
  DNAJ_related  44 leLFkthFLlfhaLYrLreklleekegeLqisaleirllp....veekeaeasleeadpLreYYldlsnleetdeaeVeelLesFwkr 127
                    e + +h L  h+L +L ++  +ek   L i++ +++l+     + ++  ++ le+++ L++ Yl +++ e+ d a+ e lLe ++++
    CCD25199.1 197 TEFHFHHDLCSHILNELENEVNREKLRDLLIKSKKLSLFYqkslLVRQVLDELLESDEDLASMYLSVHRTEDDDFADLEMLLETYYTQ 284
                   45555677999***************************99888878888999999999***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3639.65
//
Query:       CCD25200.1  [L=956]
Description: hypothetical protein NDAI_0E03830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.9e-228  759.5   0.5   2.7e-228  759.0   0.0    1.5  2  tRNA-synt_2c    tRNA synthetases class II (A)
    5.1e-18   64.9   0.1    1.3e-17   63.6   0.1    1.8  1  tRNA_SAD        Threonyl and Alanyl tRNA synthetase second ad
      2e-15   57.4   4.1      5e-15   56.1   4.1    1.8  1  DHHA1           DHHA1 domain
  ------ inclusion threshold ------
       0.41   10.6   2.0         23    4.9   0.4    2.3  2  Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis 


Domain annotation for each model (and alignments):
>> tRNA-synt_2c  tRNA synthetases class II (A)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  759.0   0.0  6.1e-232  2.7e-228       1     550 [.      13     590 ..      13     592 .. 0.98
   2 ?   -2.9   0.2       0.4   1.8e+03     339     443 ..     805     838 ..     796     871 .. 0.53

  Alignments for each domain:
  == domain 1  score: 759.0 bits;  conditional E-value: 6.1e-232
                   HHHHHHHHHHHCTT-EEE----SS-SSSTTCSS--SGGGGGHHHHTTSS....CGGSSSEEEEEEEEE-EETTEEGGGGTTTSSS--SEEEEEEEEE CS
  tRNA-synt_2c   1 eirekFldfFekkgHtvvksssvvpendptllfvnAgmaqfkpiflgke....akpklkravnsQkciRagGkhnDlenVGktarHhTfFeMlGnfs 93 
                   ++r++Fld+F++k+H++++ss+vvp +dptllf+nAgm+q+kpiflg++    +  +lkra+nsQkc+RagGkhnDle+VGk+++HhTfFeMlGn+s
    CCD25200.1  13 QVRNTFLDYFKSKNHKFIPSSPVVPFDDPTLLFANAGMNQYKPIFLGTVdpssDFYTLKRAYNSQKCVRAGGKHNDLEDVGKDSYHHTFFEMLGNWS 109
                   59***********************************************99888999**************************************** PP

                   SSSS-HHHHHHHHHHHHHTTTT--GGGEEEEEETTEH........HHHHHHHHTTTTEGGGEEEE-HHHHEEESSSSEEEEEEEEEEEECETTSHHC CS
  tRNA-synt_2c  94 fgdYfkeeaiefawelltkelgldkerlyvtvfeedd........eaveiweklvgvpeerilrfgekdnfwemgdtgpcgpcseiyydrgeeigkr 182
                   fgdYfk eai++aw+llt+++g++k+rlyvt+fe+d         ea+e+w+k++ vpe++il+ ++kdnfwemgd+gpcgpcsei+ydr   ig+r
    CCD25200.1 110 FGDYFKTEAINYAWDLLTNVYGIPKDRLYVTYFEGDAkqglepdtEAQELWKKVG-VPEDHILPGNAKDNFWEMGDQGPCGPCSEIHYDR---IGGR 202
                   ************************************99****************6.**********************************...**** PP

                   HCCCCTTCTCCHEEEEEEEEEEEEEESTTSHEEEEEEEEEEEEEEHHHHHHHHTTHSSGGGSCCTHHHHHHHHHHHT-.-T......CSTCCHHHHH CS
  tRNA-synt_2c 183 kaaseveadddrvleiwnlvfmqfnreedgtlkpLpkksidtGmglerlvavLqevrsnydtdlfvpvieaieeisga.ty......edkdetdeal 272
                   +aa+ v++dd++vle+wnlvf+qfnre++g+lk Lp+k+idtGmg+erlv+vLq+vrsnydtd+f+p+++ i+ei+ga +y      edkd++d+a+
    CCD25200.1 203 NAAQLVNQDDPDVLEVWNLVFIQFNRESNGELKSLPAKHIDTGMGFERLVSVLQDVRSNYDTDVFQPLFKRIQEITGArDYtgkfgdEDKDNIDTAY 299
                   *****************************************************************************9999**************** PP

                   HHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHHHHHHH.HHTT-SST.HHHHHHHHHHHHHTTTGCCHHCCHHHHHHHHHHHHHHHHCCHHHHHH CS
  tRNA-synt_2c 273 rviaDHvralafaladGvvpsnegrgYvlRrllRravrha.kkLglkek.flaklvavvvevlgdvypelkekeekveeiieeEeerFakTlerGlk 367
                   rv+aDHvr+l faladG+vp+negrgYvlRr+lRr+ r+a k +++  + f+++l+++++++++ ++pe+ ++++++ ei++eEe++FakTl+rG++
    CCD25200.1 300 RVLADHVRTLMFALADGGVPNNEGRGYVLRRILRRGARYArKYMNYPIGnFFSTLAPTLIDQVKHIFPEIAKDPSFLFEILDEEEASFAKTLDRGER 396
                   ****************************************999****988*********************************************** PP

                   HHHHHHHHCCC..CSEEXHHHHHHHHHCHXXXHHHHHHHHHCTTXEEXHHHHHHHHHHHHHHHCCHHSXSS..XXXXXXXXTTSHCHH.....CCTS CS
  tRNA-synt_2c 368 lleelikklkk..kkelsgedafkLydtyGfPvdltkeiaeekglkvdiegfekameeqrerskkekkekk..likkdvealkelkkt.....eefl 455
                   l+e++++++++  +k+l+g+++++LydtyGfPvdlt+++aee++lk+d +gfeka++e+ e sk+  k+++  lik dv++l+el+++     ++  
    CCD25200.1 397 LFEKYAAAASQteSKTLDGKQVWRLYDTYGFPVDLTELMAEEQNLKIDGPGFEKAKQESYEASKRGGKKDNgdLIKLDVHQLSELNDNnvpktDDNA 493
                   *****99988778***************************************************9988888899**********9999899988999 PP

                   TTTXXXXXXTSXXXXXXSEEEEEEEE.EETTEEEESEEXXXXSSSSCSXXXE.EEEESSEEEEESEEEEETTEEEEEXSS.XSXXXTTSEEEEEEXH CS
  tRNA-synt_2c 456 gyeeleaeakvlallkdkefveevee.geevgvvLdrTpfYaesGGqigDeG.liekegaefrvkdvqkakgvvlhkgkleegklkvgdkvkaevde 550
                   +y + ++e+++l ++++++fv++++e g++ g++Ld+T+fYae+GGq++D+G ++ +++aef+v++vq ++g+v+h+g+leegkl+vgdk++a++de
    CCD25200.1 494 KYGTENIESTILRIHDGTNFVDSITEvGKKYGIILDKTCFYAEQGGQEYDTGkIVIDDAAEFNVENVQLYNGFVFHTGSLEEGKLSVGDKIIASYDE 590
                   ************************99678899********************7788999************************************97 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.4
                   CHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCSEEXHHHHHHHHHCHXXXHHHHHHHHHCTTXEEXHHHHHHHHHHHHHHHCCHHSXS CS
  tRNA-synt_2c 339 elkekeekveeiieeEeerFakTlerGlklleelikklkkkkelsgedafkLydtyGfPvdltkeiaeekglkvdiegfekameeqrerskkekkek 435
                   elkek + +e+++++E ++                                                                       +++k++k
    CCD25200.1 805 ELKEKFTAIEKVVKDEVKS-----------------------------------------------------------------------RAKKEAK 830
                   4444444455444444432.......................................................................2333333 PP

                   SXXXXXXX CS
  tRNA-synt_2c 436 klikkdve 443
                   +++++  +
    CCD25200.1 831 QTLDEVKT 838
                   33344444 PP

>> tRNA_SAD  Threonyl and Alanyl tRNA synthetase second additional domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.1   2.9e-21   1.3e-17       1      44 []     690     749 ..     690     749 .. 0.97

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 2.9e-21
                 EEEEEETT.................EEEEESS---SBGGGC-SEEEECCECCCTCEEEEE CS
    tRNA_SAD   1 vrvvsiGd................isvelCgGtHvpnTgeIgafkilseesiakglrRIy 44 
                 vrvv +G+                +s+e+CgGtHv +Tg+I+ f++l+e++iakg+rRI+
  CCD25200.1 690 VRVVCVGKpidelladptneewnkYSIEFCGGTHVAKTGDIKYFVVLEESGIAKGIRRIV 749
                 8******88889***********************************************7 PP

>> DHHA1  DHHA1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   4.1   1.1e-18     5e-15       3     137 ..     805     949 ..     803     950 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.1e-18
                 HHCHHHHHHHHHHHCHHHHHHHHHHHHHHHTCEEEC....TCEEEEEECHCCHHHHHHHHHHHHHHTHGBTTCEEEEEEEECT.EEEEEEEESSH.... CS
       DHHA1   3 slneerkelekeleelkealaklkaeellekaeevk....gvkvlvaevgeewdagalgiaadklksklkkpvivfvakeegd.kvkvsarskkd.... 92 
                 +l+e+  ++ek +++  +  ak++a++ l++++++     + +++v++++  ++a+a+ +a++++ks  k+++i ++++++ + k++  +  +++    
  CCD25200.1 805 ELKEKFTAIEKVVKDEVKSRAKKEAKQTLDEVKTYFtenaDAPYFVKFIDIPVNAKAITEAINYIKSSAKDKSIYLLTGNDSNgKIAHGCYISDAalak 903
                 7999999******99999999999999999999999*******************************9999**********************99**** PP

                 SS-HHHHHHHHHHHTTCCEEEE.TCEEEEEEEHCHHHHHHHHHHHH CS
       DHHA1  93 gvdagelakeaaaklgggGGGH.dlAaGagipaekleealealeea 137
                 gvd + lak+++  +gg+ GG+ +  +G+g +++ + ea++++e++
  CCD25200.1 904 GVDGAVLAKQVSNVIGGKAGGKgNVFQGMGDKPDAATEAVSEIEKL 949
                 ******************************************9987 PP

>> Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1    0.0062        28     103     152 ..     362     416 ..     355     422 .. 0.81
   2 ?    4.9   0.4    0.0052        23      49     114 ..     782     847 ..     736     851 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0062
  Halogen_Hydrol 103 arrifkalekePrrlkka....rrFlysyLdsaveltekYaeL.skqpvksketr 152
                     ++ if ++ k+P  l++     +  + ++Ld+  +l ekYa   s+++ k+ + +
      CCD25200.1 362 VKHIFPEIAKDPSFLFEIldeeEASFAKTLDRGERLFEKYAAAaSQTESKTLDGK 416
                     78899999999987765433337899****************9899999988755 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0052
  Halogen_Hydrol  49 kkkhlkksglsrkelkyiretlkeakekikrlekalkrvrslevikqvreilriarrifkalekeP 114
                     k+k lk+ g++  +l +   + +e kek+ ++ek  k   ++++ k+ +++l+ ++ +f++   +P
      CCD25200.1 782 KEKKLKELGVKLGQLSISVINKHELKEKFTAIEKVVKDEVKSRAKKEAKQTLDEVKTYFTENADAP 847
                     567777777777777777777788888888888888888888888888888888888888766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       775  (0.0432261); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 6631.38
//
Query:       CCD25201.1  [L=1389]
Description: hypothetical protein NDAI_0E03840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-33  114.7   6.3    4.8e-33  114.7   6.3    2.0  2  Glyco_transf_24  Glucosyltransferase 24
    4.2e-16   59.7  10.4    4.3e-15   56.4   3.7    3.7  3  Thioredoxin_14   Thioredoxin-like domain
    4.2e-10   39.7   2.6    3.1e-08   33.6   0.5    3.9  3  Thioredoxin_13   Thioredoxin-like domain
    3.9e-06   26.9   1.6    8.6e-05   22.5   0.3    3.5  3  Thioredoxin_15   Thioredoxin-like domain
  ------ inclusion threshold ------
      0.023   14.9   0.9      0.084   13.1   0.9    2.0  1  Stealth_CR2      Stealth protein CR2, conserved region 2
      0.077   13.2   0.1       0.34   11.2   0.1    2.1  2  SdrD_B           SdrD B-like domain
       0.13   12.2   3.0      0.091   12.7   0.3    2.2  2  GerD             Spore germination GerD central core domain


Domain annotation for each model (and alignments):
>> Glyco_transf_24  Glucosyltransferase 24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.9         1   2.6e+03      36     225 ..     551     751 ..     541     768 .. 0.51
   2 !  114.7   6.3   1.9e-36   4.8e-33      11     216 ..    1145    1350 ..    1131    1382 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1
  Glyco_transf_24  36 ienflspkfkellpklak.kygfeyelvtykwPkwlrkqkekqriiwgykilfldvlfPldldkvifvdadqvvradlk....elveldlegap 124
                      ++nf   +++++l++l++ + ++++++ + ++P+   ++  k+ +i+   i++   ++P + +   ++ a +v++ d++    el ++  + + 
       CCD25201.1 551 LKNFDLIELQSFLQELSEiNEDVDLDMEDENYPSPNVNKLLKNLQIFETSIIIDGEIYPFKKNTWHYLIA-KVIKKDVSylknELRQIANKIQN 643
                      5666555555555555542234555555555555556667777777777777777777777777777766.45555554111134444444444 PP

  Glyco_transf_24 125 ygytPlcdsrk..emegfrfwkqgywkehlkgkkyhi...salyvvdlkrfrklaagdrlra.qyqklsadpnslanld..qdlPnnlqeevpi 210
                       +  P+ d r+  +m++ +  ++ y  + +++  y     + l+ ++ +r+ +  a++++   +  +l  d n+l+ l   q+l +n  + +++
       CCD25201.1 644 NAANPVKDVRSllHMKSGNARHSKYTPDYFSDAVYTTmnnTVLFEIQ-ERIVEYVASEEYNLlHTITLFDDFNTLSSLKrlQNLLENTYSGIRV 736
                      44555554332113444444444444444444444321112333333.2333344444443313345566666666665445666666666666 PP

  Glyco_transf_24 211 fslpqewlwcetwcs 225
                        +++  +  +tw++
       CCD25201.1 737 RIIHNGSMKGKTWTK 751
                      666666666666655 PP

  == domain 2  score: 114.7 bits;  conditional E-value: 1.9e-36
  Glyco_transf_24   11 lyerllkimilsvlkktkksvkfwlien.flspkfkellpklakkygf...eyelvtykwPkwlrkqkekqriiwgykilfldvlfPldldk 98  
                       +y+ ++  +++   +k ++ ++fw+i++ f+s++f+e+++ + ++ +     ++l +y wP+wlr q+ ++r++   kilfld+lfP++++k
       CCD25201.1 1145 IYQDMVFSLLKNPERKQDSILHFWIIDQpFFSQEFREFIRLINEETENlrgIIHLFSYDWPSWLRPQRFRSRTLDVSKILFLDTLFPQNISK 1236
                       344444445555555667779*****866**********99988765412258999************************************ PP

  Glyco_transf_24   99 vifvdadqvvradlkelveldlegapygytPlcdsrkemegfrfwkqgywkehlkg...kkyhisalyvvdlkrfrklaagdrlraqyqkls 187 
                       v++++       d +++++    +   +++       +m+g  +w++gyw+++l +   + y +  +++++l+++rk ++ ++lr +yq+l+
       CCD25201.1 1237 VLYMNPVAQNIVDPAKVID--QYNVDNAFSM-----LKMNGKGYWNEGYWSKMLDEnnlEFYSVNPFFLINLENVRKNEVCEKLRVHYQRLT 1321
                       ****864444444444444..3333344433.....35777789**********9844445999**************************** PP

  Glyco_transf_24  188 adpnslanldqdlPnnlqeevpifslpqe 216 
                       ++ nsl  +dqdl n +q  vpi +lp++
       CCD25201.1 1322 TNINSLQVIDQDLLNDIQLLVPISALPDK 1350
                       **************************987 PP

>> Thioredoxin_14  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.5     9e+03     184     204 ..     123     142 ..     113     156 .. 0.60
   2 ?    4.5   0.1     0.012        30     125     225 ..     305     396 ..     283     413 .. 0.71
   3 !   56.4   3.7   1.7e-18   4.3e-15      11     130 ..     447     572 ..     443     693 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.5
                     T--SSS-EEEE.TTEEEESSS CS
  Thioredoxin_14 184 glkeaqepvfllNGvvlpfde 204
                     +++e  e +f+lNG+ + + +
      CCD25201.1 123 AIEEN-ENCFILNGKKYTKPD 142
                     44433.788888999775544 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.012
                     H..HT-SSS--...HHHHHHHHHHHSS----TT............TTHHHHHHHHHHHHHTT--SSS-EEEE.TTEEEESSSSH.HHHHHHHHHH CS
  Thioredoxin_14 125 eakakkskepdlt.kevvesafkealdealkseveeil.eaeitseydealkasrefikrlglkeaqepvfllNGvvlpfdekw.eqallaelqe 216
                     ++++++     lt  + +++ + ++++  +++ ++ +l + +      +++k+s++ ++++g++ +   + + NG+++++++ + e +ll+ + +
      CCD25201.1 305 YKQTSN-----LTsTSKFAKGIINNFPLLMSQLIQVELpPTA-----LKKIKKSNSDLEKFGVDYKMLGLYV-NGQYIKLSS-LnEFSLLNMIVK 387
                     322222.....2223444444446688777766544442222.....255************9877677888.*********.559999999999 PP

                     HHHHHHHHH CS
  Thioredoxin_14 217 dlqelqkav 225
                     +  ++ k++
      CCD25201.1 388 EHSHVSKLL 396
                     998888875 PP

  == domain 3  score: 56.4 bits;  conditional E-value: 1.7e-18
                     TS---S--SSS-SSSTTS---HHHHHS--SSS.----SS--EEEEEEEESS-......HHHHHHHHTHHHHHHHTT-SEEEEEEEE-..SSHHHH CS
  Thioredoxin_14  11 dailwlNdLEkDkrYsrWpsslqellrplypgqlpsirkNlfnlVlvlDlsq......redllelltllqsfiqrniPiRfGlVplvssesedsk 99 
                     ++++++Nd+E D++Y ++++++++++++   g+lp  r+N  +l++v+D+++        +l+ l+t + ++i+++ P R+Gl+pl+ s+  +  
      CCD25201.1 447 ESVIYFNDIEIDSQYDELSNDISAFFQESKFGELPEYRQNWNELIFVIDFNNlqdestIHALKGLIT-AINVITQGYPQRIGLLPLDTSQGTN-L 539
                     589************************************************9999886667777777.66667778***********444433.3 PP

                     HHHH.HHHHHHH..TT-HHHHHHHHHHHH..HT- CS
  Thioredoxin_14 100 klak.lfyylae..nygakaalefltaleakakk 130
                      l++ ++  + e  n+++ ++ +fl++l++ +++
      CCD25201.1 540 -LVQrMIRKVYElkNFDLIELQSFLQELSEINED 572
                     .333344444444488899*******96533333 PP

>> Thioredoxin_13  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.1   2.6e+02      63      94 ..     117     147 ..     107     155 .. 0.80
   2 !   33.6   0.5   1.2e-11   3.1e-08      10     108 ..     286     395 ..     277     401 .. 0.88
   3 ?    0.6   0.0       0.2     5e+02      46      88 ..     766     819 ..     760     854 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.1
                     HHHHHHS--TT--EEEETTEEE-GGG-SHHHH CS
  Thioredoxin_13  63 eanqerlvqpgqnalwlNGvaldesdidpfsL 94 
                     ++ +++ +++ +n ++lNG + ++ d d+f L
      CCD25201.1 117 KQLRHYAIEENENCFILNGKKYTKPD-DIFYL 147
                     344556699**********9999888.78776 PP

  == domain 2  score: 33.6 bits;  conditional E-value: 1.2e-11
                     -SSGGTTHHHHHHHHHHH........HSSHHHHHHHHHHTGGGGSTTCS-SSTTTTTTTTTHHHHHHS....--TT--EEEETTEEE-GGG-SHH CS
  Thioredoxin_13  10 kawelqdLglqaaqlIms........sedpLkaLsdlsqnFPkyassLarvkvseelreeieanqerl....vqpgqnalwlNGvaldesdidpf 92 
                     ++ el++L+++ + lI +          +  k  + +  nFP + s+L +v++  +  ++i+++ + l    v+     l++NG  ++ s+++ f
      CCD25201.1 286 SETELEELDMKVTYLISKyykqtsnlT-STSKFAKGIINNFPLLMSQLIQVELPPTALKKIKKSNSDLekfgVDYKMLGLYVNGQYIKLSSLNEF 379
                     6789*************9888664421.36677889***************9999999999999999989999999999**************** PP

                     HHHHHHHHHHHHHHHH CS
  Thioredoxin_13  93 sLldlLrkErkllnsl 108
                     sLl+++ kE++ +++l
      CCD25201.1 380 SLLNMIVKEHSHVSKL 395
                     ***********99887 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.2
                     STTCS-SSTTTTTTTTTHHHHHHS...........--TT--EEEETTEEE-GGG CS
  Thioredoxin_13  46 assLarvkvseelreeieanqerl...........vqpgqnalwlNGvaldesd 88 
                      s+L ++++++e +   + n ++l           v++ ++ +++NG+ +  + 
      CCD25201.1 766 LSALIQQTKNNEYEGTSSINPNMLarwlpdisvpfVPGLSSFMIINGRFIHFEP 819
                     5677777888888888888887778888888888899999*******9876544 PP

>> Thioredoxin_15  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.14   3.7e+02     133     173 ..     114     154 ..      74     155 .. 0.86
   2 ?   -2.5   0.0       1.6     4e+03      76     157 ..     296     371 ..     283     380 .. 0.55
   3 !   22.5   0.3   3.4e-08   8.6e-05      23     212 ..     700     870 ..     676     871 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.14
                     HHHHHHHHTT--TT-EEEEETTEEEEEESSTTSS-HHHHHH CS
  Thioredoxin_15 133 alqkflrvlglepgqnavilNGRvvgpidedeefsaeDfel 173
                      lqk lr   +e+++n  ilNG+     d+   ++++D+++
      CCD25201.1 114 DLQKQLRHYAIEENENCFILNGKKYTKPDDIFYLKSNDLKQ 154
                     5778889999************9988888888888888765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.6
                     HHHHHHHHTGGGGCT-SSHHHHHH.HHH............-------HH......HHHHHHHHHHHTT--TT-EEEEETTEEE CS
  Thioredoxin_15  76 lissalsaalkklknlealeflek.lleeeteellvsgmdkdafekelnaeeakdylkalqkflrvlglepgqnavilNGRvv 157
                      ++ ++s+++k+ +nl+++++ +k +++      + + + ++  + el    a +++k+  + l+++g++    ++ +NG  +
      CCD25201.1 296 KVTYLISKYYKQTSNLTSTSKFAKgIIN------NFPLLMSQLIQVELP-PTALKKIKKSNSDLEKFGVDYKMLGLYVNGQYI 371
                     3567777777777777777744441444......223333333444443.444455666677777777777777777777766 PP

  == domain 3  score: 22.5 bits;  conditional E-value: 3.4e-08
                     S-TTT-EEEEEEE-TTSHHHHHHHHHHHHHHHH-TTEEEEEEE--S--SS-THHHHHHHHHTGGGGCT-SSHHHHHHHHH............--- CS
  Thioredoxin_15  23 sdklkpvtlwvvaDldseeGrkLLleAlkflksspgvRlgiihnpssdseasslissalsaalkklknlealefleklleeeteellvsgmdkda 117
                     ++     t+++  D+++ + +k L++ l+     +g+R+ iihn s + ++ +     l++ l+k+k  + +++l++l++             ++
      CCD25201.1 700 EEYNLLHTITLFDDFNTLSSLKRLQNLLENT--YSGIRVRIIHNGSMKGKTWT----KLKKVLEKKK--NVKSQLSALIQ-------------QT 773
                     4456667999******************986..89*************66434....4555555555..55677999999.............45 PP

                     ----HH......HHHHHHHHHH..HTT--TT.-EEEEETTEEEEEESSTTSS-HHHHHHHHHHHHHHTHHHHHHHHHH.HT-TTS--SHHHHHHH CS
  Thioredoxin_15 118 fekelnaeeakdylkalqkflr..vlglepg.qnavilNGRvvgpidedeefsaeDfelLesyerkkrikpvveaiee.lgleskisdsdlvakv 208
                     +++e++   ++   ++l++ l   ++ + pg ++ +i+NGR++  ++ +e  ++  fe + + e ++  +  ++ i+e   le+  + +dl+ + 
      CCD25201.1 774 KNNEYE-GTSSINPNMLARWLPdiSVPFVPGlSSFMIINGRFI-HFEPTEIPTTTNFEAIIKREAQRTLQTTFSLIKEfPTLEDAKFNPDLIEMT 866
                     556666.66666777777777645666677746789*******.999999****************************66788888******999 PP

                     HHHH CS
  Thioredoxin_15 209 tSlv 212
                     ++l+
      CCD25201.1 867 SALL 870
                     9987 PP

>> Stealth_CR2  Stealth protein CR2, conserved region 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.9   3.3e-05     0.084      34      86 ..     404     454 ..     378     476 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.3e-05
  Stealth_CR2  34 pewlntenpkikvvkhk.dilkeesklptfns.naielnlhripglsekflylnD 86 
                  p+   t +p ++ vk+  +++++ s l+  n+ + i++nlh ipg se  +y+nD
   CCD25201.1 404 PN---TMKPTLSSVKKIiNYFSSIS-LDNLNTlQPIKYNLHMIPGFSESVIYFND 454
                  43...44555555555414555555.888887478*******************9 PP

>> SdrD_B  SdrD B-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       4.5   1.2e+04      14      41 ..     639     666 ..     638     671 .. 0.80
   2 ?   11.2   0.1   0.00013      0.34      20      62 ..    1028    1072 ..    1023    1087 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 4.5
      SdrD_B  14 nGiqdagekgisgvtVtLkdakgevvat 41 
                 n iq++  + +++v   L  ++g++ ++
  CCD25201.1 639 NKIQNNAANPVKDVRSLLHMKSGNARHS 666
                 6689999999999999999999887654 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00013
      SdrD_B   20 gekgisgvtVtLkdakgevvatttTdasGkY.kF.tnltpGeYkV 62  
                  + +gi gv ++L++++g+vv+tttT a+  Y +   n  + +Y+V
  CCD25201.1 1028 QVDGIGGVCLELINSQGDVVDTTTTMATFGYgTLhANDINTKYQV 1072
                  568*****************9999987744413313334455776 PP

>> GerD  Spore germination GerD central core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2         3   7.7e+03      79      96 ..     756     773 ..     741     776 .. 0.68
   2 ?   12.7   0.3   3.6e-05     0.091      24      75 ..    1108    1162 ..    1104    1190 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3
        GerD  79 llkskeyrkqlekviqet 96 
                 l k k++++ql  +iq+t
  CCD25201.1 756 LEKKKNVKSQLSALIQQT 773
                 346677888888888887 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.6e-05
        GerD   24 fwkklfkdpkfaealaksmkkenekllkdLmkDpe....Yqkmlleilkdpemekq 75  
                  ++ +++k+p+f e++ k + ++n +++  L +Dp+    Yq m+ ++lk+pe ++ 
  CCD25201.1 1108 LYVQVMKNPNFHEKV-KKVDDNNYHVFTLLKDDPDeetiYQDMVFSLLKNPERKQD 1162
                  56789********98.55899999999999999988888*************8764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       809  (0.0451224); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 8970.82
//
Query:       CCD25202.1  [L=768]
Description: hypothetical protein NDAI_0E03850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.8e-35  120.4   4.3    6.8e-35  120.4   4.3    2.0  2  Fungal_trans  Fungal specific transcription factor domain
    3.6e-07   30.2  11.4    6.2e-07   29.4  11.4    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.016   15.2   0.8       0.15   12.0   0.1    2.3  2  Vta1          Vta1 like


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.4   4.3   1.1e-38   6.8e-35       1     267 []     306     556 ..     306     556 .. 0.87
   2 ?   -1.7   0.1      0.19   1.1e+03     222     262 ..     646     689 ..     616     734 .. 0.58

  Alignments for each domain:
  == domain 1  score: 120.4 bits;  conditional E-value: 1.1e-38
  Fungal_trans   1 ldrffsnfh.pqfpilhkpsflpkt...ssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwi 93 
                   l+ f + ++ ++f ++h++sfl+ +   +++n  +s y+s  l++a+ a+G+++s++ +  s     ++s    +     +i++  d +s ++ +++
    CCD25202.1 306 LSNFYKFLYpGHFIFVHRESFLYGFfnhFKNNYADSHYCSLELIYAMSAIGSRLSPTLQDMS-EIYYEMS----K-TTLLNIVF--DENSAPK-ITT 393
                   67899999*9*********************************************9999887.2222222....2.22345666..5666666.*** PP

  Fungal_trans  94 lqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkks.lwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlpLPcdd 189
                   +q+Ll+l++ye++ +++ l+++++g+a+r+ +++g++ +p  +++++   kl+e e ++r R++w++++ D +i+l+lGr+++l+ s  n  +P++d
    CCD25202.1 394 VQALLCLAFYELGKGSNQLAWYFSGLAIRVGYDMGFQLDPQVWYTDDiKSKLTESELKIRSRIYWGCYIADHFICLMLGRTSTLSVS--NSTIPESD 488
                   ********************************************9999999*******************************76666..55566666 PP

  Fungal_trans 190 ddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsiekqlqqrdlqseklswveeleraldnWre 267
                   + l e + ++e++ v+   +   + +++ + l+ L+++++ + ++++    + +q+++       ++ ++ ++ nWr+
    CCD25202.1 489 E-LPEVNGTEEFRFVS---KHVLQISLPLKNLIVLSRVVQIFTSKIFIETDDIEQKVEY------LNNFNLQVFNWRQ 556
                   6.55666555555555...4567889*********************************......***********96 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.19
  Fungal_trans 222 laLkkilsk........iagsllsiekqlqqrdlqseklswveeleral 262
                   ++Lkk+  +        ++g+++++ ++++  d++      +++l+++l
    CCD25202.1 646 NCLKKLEEQtnvtanstVSGEIMNPINETSTIDKA-----TRLKLDEQL 689
                   44555544455555555444444444444444444.....222222222 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4  11.4     1e-10   6.2e-07       2      39 ..      58      94 ..      57      95 .. 0.92

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1e-10
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39
                aC+nCrk++ KCd   P C++C++l+ +C  ++e  ++
  CCD25202.1 58 ACTNCRKRRKKCDLSYP-CASCVRLRIDCNVNEEDLRK 94
                9****************.************88887766 PP

>> Vta1  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.088   5.3e+02      71      91 ..     538     558 ..     528     571 .. 0.74
   2 ?   12.0   0.1   2.6e-05      0.15      14      93 ..     575     656 ..     566     696 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.088
        Vta1  71 eaakayvenfalklfnkadke 91 
                 e++ +y+ nf l++fn+ +  
  CCD25202.1 538 EQKVEYLNNFNLQVFNWRQSL 558
                 56678***********98765 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.6e-05
        Vta1  14 kadpvvaYyc.rlyaveqilkkklkrkdkeakefltkLldklE....qlKkelkendaiedeeaakayvenfalklfnkadkedr 93 
                 ++dp ++Y+   +y+v +  +k   +  +e++ +++++ld+l     ++Kk+      +++ +  + yv   a + ++k +++ +
  CCD25202.1 575 STDPTISYFWyYYYIVRLTFNKPFIEDCTESQIVVIEILDDLQtlfnNFKKKY---GGFNKATLYQLYVCLLAINCLKKLEEQTN 656
                 4799999965166677777775555777*************993333456666...9999999******9999999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 5452.52
//
Query:       CCD25203.1  [L=400]
Description: hypothetical protein NDAI_0E03860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-08   35.1   0.0    3.3e-08   33.8   0.0    1.7  1  SWIRM     SWIRM domain


Domain annotation for each model (and alignments):
>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   1.8e-12   3.3e-08       9      87 ..     321     391 ..     315     393 .. 0.88

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.8e-12
       SWIRM   9 dslhpiEkellselfngkdktpeeYlkiRnkiialyrenp..keyltvteaqkalkrrrltgidvnllsrihefLerwGlI 87 
                 + lhp E  l++ l+      ++ Yl+++++++ +   +      +++t+aqka++      idvn++sr+++++e++G++
  CCD25203.1 321 NNLHPAELILAQVLR----LPCDLYLDSKRRLFLEKVHRLkkGLPFRRTDAQKACR------IDVNKASRLYAAFEKVGWL 391
                 789****99999999....************99887755422667899********......9*****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2911.58
//
Query:       CCD25204.1  [L=164]
Description: hypothetical protein NDAI_0E03870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-49  167.0   0.0      2e-49  166.8   0.0    1.0  1  UQ_con     Ubiquitin-conjugating enzyme
    0.00034   20.3   0.0    0.00041   20.0   0.0    1.1  1  Prok-E2_B  Prokaryotic E2 family B
      0.001   19.4   0.0     0.0018   18.6   0.0    1.5  1  RWD        RWD domain
  ------ inclusion threshold ------
      0.012   15.5   0.3      0.021   14.7   0.3    1.4  1  UEV        UEV domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.8   0.0   4.5e-53     2e-49       1     136 [.      20     154 ..      20     158 .. 0.98

  Alignments for each domain:
  == domain 1  score: 166.8 bits;  conditional E-value: 4.5e-53
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltles 99 
                 rlq+el++l+ ++ +g+sa + d+e+l++w+++i+gp+dtpY+g  Fkl+++f+++YP+ pP vkf+++++HPnvd sG++cldiLk++ Ws+++++e+
  CCD25204.1  20 RLQSELMQLMMSPTPGLSAFPNDEEDLTHWSAIITGPKDTPYDGLRFKLSFQFSDSYPYAPPLVKFISPMWHPNVDMSGNICLDILKDQ-WSAVYNVET 117
                 89*************************************************************************************77.********* PP

                 HHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHH CS
      UQ_con 100 vllsiqsLlaepnpesplnkeaakllkkdreeykkkv 136
                 +lls+q+Ll+epn++spln+ aa+l+ +d++eykk+ 
  CCD25204.1 118 ILLSLQALLEEPNNSSPLNAVAAELWDDDMNEYKKRL 154
                 **********************************986 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   9.3e-08   0.00041      34     119 ..      62     144 ..      38     158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 9.3e-08
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.egisgde...daefag 119
                 +g  ++l + ++ds+p++pp v    p    + p +   +g +Cl       d+w +  +v  +l +lq++L+  + s+      ae+++
  CCD25204.1  62 DGLRFKLSFQFSDSYPYAPPLVKFISPM---WHPNVDM-SGNICL---DILKDQWSAVYNVETILLSLQALLEePNNSSPLnavAAELWD 144
                 788899**********************...99***99.******...999**********************87777766566555554 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.9e-07    0.0018      50      99 ..      61     112 ..      32     155 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.9e-07
                 T-CEEEEEEEEE-SSTTSS--EEEEEECCSS-HHHHHH..HHHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxx RF
         RWD  50 kkkpslkleiklpeeYPeeaPiislsstenlpkeqvks..leekleelaeen 99 
                  +  ++kl ++++ +YP+ +P +++ s+ + p+ +++   + + l+++++  
  CCD25204.1  61 YDGLRFKLSFQFSDSYPYAPPLVKFISPMWHPNVDMSGniCLDILKDQWSAV 112
                 45789*******************9999989999998776777888888765 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.3   4.7e-06     0.021      53     120 ..      69     134 ..      52     135 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.7e-06
                 EEE--TTTTTS--EE.EE-GCC--TSGGGGGB-TTSBB--HHHH.S--T..TT--HHHHHHHHHH-----XX CS
         UEV  53 liwvlesyPveaPiv.yvkptksmvikknenvdaqGlvylpyLe.eWkr..eksnlvslvqelaqafeeesP 120
                  ++  +syP+++P+v +++p  +       nvd +G++ l++L+ +W+   +  +++  +q l +  +++sP
  CCD25204.1  69 SFQFSDSYPYAPPLVkFISPMWH------PNVDMSGNICLDILKdQWSAvyNVETILLSLQALLEEPNNSSP 134
                 567789*******9867887655......79************83577643333344455556567777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1277.35
//
Query:       CCD25205.1  [L=319]
Description: hypothetical protein NDAI_0E03880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-32  111.5   1.2      4e-32  111.4   0.1    1.6  2  RPA43_OB     RPA43 OB domain in RNA Pol I
    2.7e-12   46.9   0.0    7.8e-12   45.4   0.0    1.8  2  SHS2_Rpb7-N  SHS2 domain found in N terminus of Rpb7p/Rpc25p/


Domain annotation for each model (and alignments):
>> RPA43_OB  RPA43 OB domain in RNA Pol I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.4   0.1   4.5e-36     4e-32       1     123 [.     124     244 ..     124     245 .. 0.87
   2 ?   -3.1   0.1       1.3   1.2e+04      78      78 ..     285     285 ..     256     315 .. 0.56

  Alignments for each domain:
  == domain 1  score: 111.4 bits;  conditional E-value: 4.5e-36
                 --TTEEEEEEEEEEESSEEEEEETTTEEEEEECTTS-TTSEEE...CSS-------------------------------...EEEEEEE-T.TSSB-- CS
    RPA43_OB   1 PqrgqkLeGwvnlqseghiglvvlnlFnvsIerkrlpadWkwvpaekkkekgkkaeeeeeeeeeeadaekeeeeelekae...eetGywvdsvsgekve 96 
                 P++g+++eG++ +qs++higl+++++Fn+sI+++++p+dW++++++++   +++++++++++e+++ +e ++++ ++ ++   ++ Gywvd+ +g++++
  CCD25205.1 124 PHVGDIMEGYIFIQSASHIGLLLHDAFNASIKKNNIPEDWTFISNDEEYIAETSRTDDGDKNENNNGNEGNNNNGIQGNSyvnRSLGYWVDA-NGSRID 221
                 99*****************************************7775555555557777777777777777777777776888*********.****** PP

                 SEEEEEEEEEE-....SSSS-EEEEES CS
    RPA43_OB  97 gklkFrvvdvdvgserdkgflsieGtl 123
                 gklkF+v++v++    +++++s+eGtl
  CCD25205.1 222 GKLKFTVRNVHT----TGRVVSVEGTL 244
                 ************....**********9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.3
                 - CS
    RPA43_OB  78 k 78 
                 +
  CCD25205.1 285 H 285
                 1 PP

>> SHS2_Rpb7-N  SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   8.6e-16   7.8e-12       2      70 .]      42     122 ..      41     122 .. 0.91
   2 ?   -3.5   0.0       1.6   1.5e+04      49      58 ..     285     299 ..     271     301 .. 0.62

  Alignments for each domain:
  == domain 1  score: 45.4 bits;  conditional E-value: 8.6e-16
                  EEEEE-GGGTTSTHHHHHHHHHHHHHTTBEETTT.EEEEEEEEEEEECC............EEE-TTTSSEEEEEEEEEEEE CS
  SHS2_Rpb7-N   2 dtvrlePsylgstledallerllekyegkvvpsl.Gvivavldiaeyse............gkvlggsGsvyvrVtfralvF 70 
                  ++v+l+P+y++ ++++++++++l+++++k++  + Gv++ +++++  +              k ++++++ + +++++++ +
   CCD25205.1  42 LYVSLAPMYMN-NPLQGIMKQHLNPMVMKYNSTVgGVVLGYENLKICDMdptndetsdeklIKLTPDTPFGFTWCEVDLYAW 122
                  69*********.********************************99666666667777799999************999877 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.6
                  C.....EEE-TTTSS CS
  SHS2_Rpb7-N  49 e.....gkvlggsGs 58 
                        + v++++Gs
   CCD25205.1 285 HkeldlSAVREDDGS 299
                  134444778888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2531.92
//
Query:       CCD25206.1  [L=985]
Description: hypothetical protein NDAI_0E03890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.8e-35  121.2   0.0    3.8e-35  121.2   0.0    2.5  3  GTP_EFTU     Elongation factor Tu GTP binding domain
      1e-20   73.8   0.0    3.7e-20   72.0   0.0    2.0  1  IF-2         Translation-initiation factor 2
      2e-14   53.7   4.4    2.3e-09   37.5   0.0    3.7  3  GTP_EFTU_D2  Elongation factor Tu domain 2
    1.7e-06   28.1   0.0    1.7e-06   28.1   0.0    3.4  4  MMR_HSR1     50S ribosome-binding GTPase
    7.5e-06   25.8   0.1    2.5e-05   24.1   0.1    2.0  1  GTP_EFTU_D4  Elongation factor Tu domain 4
    0.00022   21.4   0.0    0.00022   21.4   0.0    2.3  2  Roc          Ras of Complex, Roc, domain of DAPkinase
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.073   12.6   0.0    2.4  2  FeoB_N       Ferrous iron transport protein B
      0.025   14.3   0.0      0.025   14.3   0.0    2.7  3  ATP_bind_1   Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   2.6         7   1.6e+04      55      55 ..     117     117 ..      86     162 .. 0.56
   2 ?   -9.2   8.0         8   1.8e+04      38      38 ..     286     286 ..     173     383 .. 0.58
   3 !  121.2   0.0   1.7e-38   3.8e-35       5     192 ..     390     599 ..     386     601 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.8 bits;  conditional E-value: 7
                 C CS
    GTP_EFTU  55 T 55 
                  
  CCD25206.1 117 A 117
                 0 PP

  == domain 2  score: -9.2 bits;  conditional E-value: 8
                 H CS
    GTP_EFTU  38 e 38 
                 +
  CCD25206.1 286 K 286
                 1 PP

  == domain 3  score: 121.2 bits;  conditional E-value: 1.7e-38
                 EEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEET CS
    GTP_EFTU   5 nigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvda 103
                  ++i+ghvD+GKt L+d++ +++ +  ++g  ++ +      + E  ++ T k+a+ + + + +   + +iDtPGH++Fs+  +rg + +++a+lv+d+
  CCD25206.1 390 ICCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQ-QIGATYFPIEAIKQKTQKMAQYEKQ-TFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDI 486
                 69******************99888888777665.77899***************99999.89999********************************* PP

                 TTBSTHHHHHHHHHHHHTTTEEEEEEESCGST...........HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT.............TTEEEEEEBTTTT CS
    GTP_EFTU 104 veGvepqteevlrlalkegvpiivfiNKmDrl...........kaelkeiveevkqklsrkeeklekygekge.............kevpvvfgSalkg 178
                 ++G e+qt e ++l+++++ p+iv++NK+Drl           +++++++ ++vk++++++ ++++++ +++              k v++v++Sa++g
  CCD25206.1 487 MHGLEQQTIESIKLLRDRKAPFIVALNKIDRLydwkttpnnsfRDSFDQQSRAVKDEFETRLSNIQVALAEQGlnselyfknknlaKYVSIVPTSAVTG 585
                 ***************************************99998999999999999998887777777555445777888888999************* PP

                 BTHHHHHHHHHHHS CS
    GTP_EFTU 179 egvktllealvell 192
                 egv +ll  l el+
  CCD25206.1 586 EGVPDLLWLLLELT 599
                 *******9998876 PP

>> IF-2  Translation-initiation factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   1.7e-23   3.7e-20      16     104 ..     737     826 ..     725     827 .. 0.90

  Alignments for each domain:
  == domain 1  score: 72.0 bits;  conditional E-value: 1.7e-23
                 EEEEEESSHHHHHHHHHHHHCTT.SSTEEEECEEEESSB-HHHHHHHHH..ST....EEEEEESSSCTHHHHHCCCCCTSEEEEESSHHHHHHHH CS
        IF-2  16 nviikaDvqGsleAlkeaLekleseevkvkvihsgvGaitesDvelasa..sn....aiiigFnvkvskkakklaekegvkirlynvIYkliddv 104
                 +v ++a++ GsleAl ++L+++     k++v++ g G++ ++Dv++a +  ++    a++++F+vk++k+a++ ae+eg+ki+++++IY+l+d +
  CCD25206.1 737 GVTVQASTLGSLEALLDFLKDM-----KIPVMSIGLGPVYKRDVMKAGTmlERapefAVMLCFDVKIDKEAEQYAEQEGIKIFNADIIYHLFDAF 826
                 699******************9.....7*******************8866224567***********************************976 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       4.7   1.1e+04      15      41 ..     346     372 ..     344     375 .. 0.68
   2 !   37.5   0.0     1e-12   2.3e-09       1      71 [.     627     702 ..     627     705 .. 0.95
   3 !   15.8   0.2   6.2e-06     0.014       3      64 ..     864     930 ..     863     935 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 4.7
                  TTEEEEEECTCTTSEEEEEEEEEEEEE CS
  GTP_EFTU_D2  15 kGdevrilgndtskkeivtrissletf 41 
                  +++ ++++ ++ +++e++++i ++e++
   CCD25206.1 346 ENEIIENGEKEEEGEEEIEEIVRTEAP 372
                  577788855555566588888888765 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 1e-12
                  EEEEEEEEEESEEETTEEEEEEC.TCTTSEEEEEEEEEEEEETEEESEE..........ETTSEEEEEEEESSCCSGSSTTC CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilg.ndtskkeivtrissletfhededea..........vaganaGvivaikgledaiivGd 71 
                  Gt++++++ +G l++Gd+++++g n+    +ivt i++l+t+ ++++e+          ++ a+ Gv++a+ +le+a + G+
   CCD25206.1 627 GTTIDVILSNGYLREGDRIVLCGmNG----PIVTNIRALLTP-QPLRELrlkseyvhhkEVKAALGVKIAANDLEKA-VSGS 702
                  9**********************887....9***********.88*******************************8.8886 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 6.2e-06
                  EEEEEEEESEEETTEEEEEEC.TCTTSEE...EEEEEEEEEEETEEESEEETTSE.EEEEEEESSCC CS
  GTP_EFTU_D2   3 valgrvysGtlkkGdevrilg.ndtskke...ivtrissletfhededeavagan.aGvivaikgle 64 
                  ++++ v++G+l+ G  +  ++ ++t k++    ++++ssle +h+ ++e+ +g+  aGv v++ + +
   CCD25206.1 864 IIGVDVIEGELRIGTPICAVKtDPTTKEKnilLLGKVSSLEINHQAVTEVKKGQTaAGVAVRLEDPS 930
                  68899******************998888*********************99996268888877665 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   1.7         8   1.8e+04      72      73 ..     109     110 ..      82     141 .. 0.44
   2 !   28.1   0.0   7.5e-10   1.7e-06       2     114 .]     391     514 ..     390     514 .. 0.70
   3 ?   -2.0   0.0       1.7   3.7e+03      27      80 ..     623     686 ..     614     720 .. 0.64
   4 ?    0.4   0.0       0.3   6.6e+02      71      93 ..     811     837 ..     790     859 .. 0.61

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 8
                 HH CS
    MMR_HSR1  72 al 73 
                 a+
  CCD25206.1 109 AK 110
                 22 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 7.5e-10
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSE..EEEEEE...ETTEE................EEEEECGGCSSHHHHHHHHHHHHHHHHC.TSE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdi..negrvk...lkgke................ielvDtpGliegaseekglgkaflalee.adl 78 
                 ++i+G+  +GK+ L+ ++ +++++ ++  g T++i  +++ ++       +                + ++DtpG  e      ++++   +  + +++
  CCD25206.1 391 CCILGHVDTGKTKLLDKIRQTNVQGGEAGGITQQIgaTYFPIEaikQ---KtqkmaqyekqtfdvpgLLVIDTPG-HE------SFSNLRSRGSSlCNI 479
                 689***************99878777777888777444444444321...1234455554555555577777777.33......33333333333489* PP

                 EEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  79 illvvdaseeklkpldeeleelleeakkplilvlnk 114
                 ++lv+d+  ++l+++  e  +ll+++k p+i++lnk
  CCD25206.1 480 AILVIDIM-HGLEQQTIESIKLLRDRKAPFIVALNK 514
                 ******99.7799999999999999**********8 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.7
                 SSSTTSSSSEEEEEEEETT.EEEEEEECGGCS.........SHHHHHHHHHHHHHHHHCTSEEE CS
    MMR_HSR1  27 sdkpgtTrdinegrvklkg.keielvDtpGli.........egaseekglgkaflaleeadlil 80 
                  +  gtT+d++  +  l++ ++i+l+ + G i          +  +e +l+ ++  ++e++++l
  CCD25206.1 623 VEGFGTTIDVILSNGYLREgDRIVLCGMNGPIvtniralltPQPLRELRLKSEYVHHKEVKAAL 686
                 5556899999888776555588999988883222222222212333446777777666665544 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.3
                 HHHHCTSEEEEEEETT....TTCSHHH CS
    MMR_HSR1  71 laleeadlillvvdas....eeklkpl 93 
                  ++ +ad+i +++da     e+ l++ 
  CCD25206.1 811 IKIFNADIIYHLFDAFtayqEKLLEER 837
                 224469********8844422223333 PP

>> GTP_EFTU_D4  Elongation factor Tu domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   1.1e-08   2.5e-05      13      86 .]     857     947 ..     848     947 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.1e-08
                  EETCCCEEEEEEEEEEEEETT-EEEETTE.E.........EEEEEEEEETTEEESEEETT-E...EEEEEES.....S-TTTS--TT-EEE CS
  GTP_EFTU_D4  13 frrsdpaivGvevlgGvikpgvklikedGre.........vGeilqiqdkgkkleeakaGqe...vaisieg.....kivGrqikegdily 86 
                    ++ p+i+Gv+v++G ++ g ++   +            +G++++++ ++++++e+k+Gq    va+ +e+     +i Gr+++e d+ly
   CCD25206.1 857 INKRGPMIIGVDVIEGELRIGTPICAVKTDPttkeknillLGKVSSLEINHQAVTEVKKGQTaagVAVRLEDpssqqPIWGRHVDESDTLY 947
                  55678*****************9964332111112334447*******************96555889877522222689*********99 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   3.7         8   1.8e+04       8      50 ..      79     122 ..      77     134 .. 0.46
   2 !   21.4   0.0   9.7e-08   0.00022       3     119 ..     392     516 ..     391     517 .. 0.73

  Alignments for each domain:
  == domain 1  score: -5.3 bits;  conditional E-value: 8
                 TTSSHHHHHHCHCT-CCC-EEETTT.TEEEEEEECGGSGGCTTB CS
         Roc   8 sgvGKtsllkrfvedkfsekeksti.gvdfltkevtkikgvend 50 
                 +g GK  l ++  ++k ++++++ +   + ++k++++  + e++
  CCD25206.1  79 NGGGKPVLKSKKEKEKEKKEKEKQLkKEQAAKKKAQQQAQKEKN 122
                 56666666665555554444443330333344444332222222 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 9.7e-08
                 EEESSTTSSHHHHHHCHCT-CCC-EE....ETTTTEEEEEEECGGSGGCTTBTTTTC.....EEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHH CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfseke....kstigvdfltkevtkikgvendkkvkk.....vklniWDtaGqerfrslhplylreaalailvydsrss 92 
                 +++G   +GKt+ll+++ + +++  e    ++ ig++++  e+ k k+ +   + +k       l + Dt G+e f++l++   +  ++ailv+d  + 
  CCD25206.1 392 CILGHVDTGKTKLLDKIRQTNVQGGEaggiTQQIGATYFPIEAIKQKTQKM-AQYEKqtfdvPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHG 489
                 699*****************9986652222688999998876655444332.2222301111346899***************************7654 PP

                 HCHHHHHHHHHHHCS.SS-EEEEEE-TT CS
         Roc  93 enlkeWlkelkkvag.kspvilvgnkiD 119
                  + ++ ++++k  ++ k+p+i+  nkiD
  CCD25206.1 490 LE-QQTIESIKLLRDrKAPFIVALNKID 516
                 33.345888888766267999999***9 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.3e-05     0.073       4     118 ..     392     518 ..     390     527 .. 0.78
   2 ?   -2.9   0.0       1.9   4.3e+03     136     152 ..     575     591 ..     560     592 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.3e-05
                 EEEESTTSSHHHHHHHHHTTSEEEEESTTSS.........SE.EEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGG.H CS
      FeoB_N   4 alvGnpnvGkttlfnaltgakqkvgNwpGvt.........ve.kkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatn.l 91 
                 +++G  ++Gkt l++++ +++ + g   G+t         +e  k+ + k++++e +  D+PG   +++  +e     +   ++  ++ + v+d ++ l
  CCD25206.1 392 CILGHVDTGKTKLLDKIRQTNVQGGEAGGITqqigatyfpIEaIKQKTQKMAQYEKQTFDVPGLLVIDTPGHESFSNLRSRGSSLCNIAILVIDIMHgL 490
                 688999************999999999999933222222222124444455789999**********999999988888888999999999**987658 PP

                 HHHHHHHHHHH.HTTSSEEEEEETHHHH CS
      FeoB_N  92 ernLyLtlqll.elgvpvvlalnmidea 118
                 e++ +  ++ll + ++p+++aln+id +
  CCD25206.1 491 EQQTIESIKLLrDRKAPFIVALNKIDRL 518
                 8887777776537889**********87 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.9
                 S-EEEEBTTTTBTHHHH CS
      FeoB_N 136 vpvvktsakkkegieel 152
                 v +v+tsa ++eg+ +l
  CCD25206.1 575 VSIVPTSAVTGEGVPDL 591
                 789**********9887 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.5   4.6         8   1.8e+04     173     212 ..      97     137 ..      86     160 .. 0.50
   2 ?   14.3   0.0   1.1e-05     0.025      66     214 ..     426     561 ..     406     599 .. 0.72
   3 ?   -2.2   0.0       1.3     3e+03      55      85 ..     774     808 ..     770     847 .. 0.63

  Alignments for each domain:
  == domain 1  score: -6.5 bits;  conditional E-value: 8
  ATP_bind_1 173 lekeleffedvealslllekee.ekykklaeaiaelleefa 212
                 +eke +  ++  a ++++++ + ek k+l+++  e ++e +
  CCD25206.1  97 KEKEKQLKKEQAAKKKAQQQAQkEKNKELNKQNLEKVKEEK 137
                 23333333333333333333334566666665555555544 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.1e-05
  ATP_bind_1  66 galvvaleflresldwldeeleke.ed.dyllfDtPGQielfthseslakiveeLesefalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvv 162
                 ga+ + +e ++++ +++++  ++  +   +l++DtPG   + ++++ ++        +   +++ ++D     +  + i++    ++ +   + P++v+
  CCD25206.1 426 GATYFPIEAIKQKTQKMAQYEKQTfDVpGLLVIDTPGHESFSNLRSRGS--------SLCNIAILVIDIMHGLE-QQTIES----IKLLRDRKAPFIVA 511
                 88889999999999888777767755578*******************9........34445555555444333.223333....566667******** PP

  ATP_bind_1 163 lnkfDllkek.lekeleffedvealslllekeeekykklaeaiaelleefalv 214
                 lnk+D l +  ++ +  f   +++ s++ ++e   +++  ++i  +l e +l+
  CCD25206.1 512 LNKIDRLYDWkTTPNNSFRDSFDQQSRAVKDE---FETRLSNIQVALAEQGLN 561
                 *****998654444445555555555555544...566666666666666655 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.3
  ATP_bind_1  55 dvmed...lglgpngalvvaleflresl.dwldee 85 
                 dvm+    l+  p  a++ ++++  ++  ++ +e+
  CCD25206.1 774 DVMKAgtmLERAPEFAVMLCFDVKIDKEaEQYAEQ 808
                 66666655667899999999996655543444322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (985 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3670  (0.204696); expected 358.6 (0.02)
Passed bias filter:                      912  (0.0508673); expected 358.6 (0.02)
Passed Vit filter:                       452  (0.0252106); expected 17.9 (0.001)
Passed Fwd filter:                       152  (0.00847788); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 2.65u 0.43s 00:00:03.08 Elapsed: 00:00:00.97
# Mc/sec: 3073.87
//
Query:       CCD25207.1  [L=317]
Description: hypothetical protein NDAI_0E03900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      5e-56  188.9   0.5      7e-56  188.5   0.5    1.2  1  Pyrophosphatase  Inorganic pyrophosphatase


Domain annotation for each model (and alignments):
>> Pyrophosphatase  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.5   0.5   3.9e-60     7e-56       1     160 []      52     251 ..      52     251 .. 0.96

  Alignments for each domain:
  == domain 1  score: 188.5 bits;  conditional E-value: 3.9e-60
                      EEEEE-TTCSEEEEEETTT............TEEEEEEE-SSSB-BSSEEEEETT--BT.......................CCBEETSSSEEE CS
  Pyrophosphatase   1 vvvEiprgsnaKyeidkee............gklrldrvlftskgypanYGfipqTled.......................telkGDgDPlDv 59 
                      +vvEipr++naK+ei+k+             +klr+++++f+++gy++nYG++pqT+ed                       +e+ GD+DPlDv
       CCD25207.1  52 MVVEIPRWTNAKFEISKAAawnpivqdttsdKKLRYVKNCFPYHGYIHNYGAFPQTWEDpkkkidggdiisndkidrkadpeKEAGGDNDPLDV 145
                      8********************************************************************************************* PP

                      EEESSS---TTEEEEEEEEEEEEEEETTEEEEEEEEEETTSGGGTT-SSGGG....STHHHHHHHHHHHHHTTTTSCCT-SE.EEE.EEEEHHH CS
  Pyrophosphatase  60 lvlgeeplspgevvevkvlGvlamiDegetDdKiiavpvkdprlkkindied....lpgllleeiehfFetykdlegkkknv.kve.ewkdkee 147
                      l++g++ +s+g+v++vkvlG+la++Dege D+Kiia++vkdp +k++ndi d    +pgll ++++++F+ yk+++gk +n+ ++  + ++k++
       CCD25207.1 146 LEIGSTVASTGQVKQVKVLGALALLDEGEIDWKIIAIDVKDPLHKELNDIGDvekyCPGLL-KATKEWFRIYKIPDGKPENKfALFgKPQNKRH 238
                      ****8888**********************************88********999888888.***************9666666666******* PP

                      HHHHHHHHHHHHH CS
  Pyrophosphatase 148 Aekvieeaheryk 160
                      A+k+ie+ah +++
       CCD25207.1 239 ALKIIEDAHGYWE 251
                      *********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       470  (0.0262145); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2313.85
//
Query:       CCD25208.1  [L=341]
Description: hypothetical protein NDAI_0E03910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0062   15.3   0.0     0.0088   14.8   0.0    1.2  1  Acetate_kinase  Acetokinase family


Domain annotation for each model (and alignments):
>> Acetate_kinase  Acetokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.9e-07    0.0088     146     213 ..     236     303 ..     187     310 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.9e-07
  Acetate_kinase 146 DtafhqtlpeeaylyalpeelyeehgiRrygfHgtshkyvskraakilgkpledlnlivcHlGnGaSv 213
                     D++ +q+l ++   +  p   y+e+  +   f g+s ++ +++ ++++++++ + ++i  H GnG S+
      CCD25208.1 236 DPSNTQELQDAKIFWCSPLINYHEFVRKNNMFWGISSNMNNNNNNNMINQQQFNYQTINSHYGNGNSL 303
                     8888999999999999999999988666678***********************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1110  (0.0619109); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2584.24
//
Query:       CCD25209.1  [L=302]
Description: hypothetical protein NDAI_0E03920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-20   72.5   0.2    6.3e-20   70.9   0.2    2.0  1  HLH       Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
      0.095   13.1   9.5      0.031   14.7   2.4    2.3  2  ASD1      Apx/Shroom domain ASD1


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.2     7e-24   6.3e-20       1      53 []     197     279 ..     197     279 .. 0.99

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 7e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHCST..............................CSTTSS-STHHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrellP..............................slppskKlsKaeiLekAveYIkhLq 53 
                 +++ahn++E+++R +iN+++++L+ ++P                              s ++++Kl+K++iLekAv+YI +Lq
  CCD25209.1 197 QKQAHNKIEKKYRININTKIAKLQHIIPwvasektafevgdsmklpdstsndlqqtlnSTGANTKLNKSMILEKAVDYILYLQ 279
                 699*******************************************************99**********************9 PP

>> ASD1  Apx/Shroom domain ASD1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.7     0.021   1.9e+02      78     112 ..      29      63 ..      13      73 .. 0.71
   2 ?   14.7   2.4   3.5e-06     0.031      79     137 ..     142     199 ..      72     201 .. 0.56

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.021
        ASD1  78 ssperkaeahlseksaeasphtpkerhsvkpaels 112
                 ++p+  +e++++e++  ++ph+ k+++s ++ ++s
  CCD25209.1  29 FQPKFDTEEQEQEQDDLTTPHFIKKEQSSTSLSSS 63 
                 5666667777778888999*****99988844333 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3.5e-06
        ASD1  79 sperkaeahlseksaeasphtpkerhsvkpaelsskeevgapqvsRiGgRkRlTaeqKk 137
                 ++++++ a+ ++++++ + +t +e+ +++  + + ++++ +++  ++++RkRlT +qK 
  CCD25209.1 142 NTNNNNTAAAGAAATALTASTEEEEDETT-IKKQLQQSIINNSNKKRCSRKRLTPDQKQ 199
                 22222222223344444444445555444.34566667778889999***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2206  (0.123041); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2379.24
//
Query:       CCD25210.1  [L=1028]
Description: hypothetical protein NDAI_0E03930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-25   88.6   0.0    3.6e-24   85.5   0.0    2.3  1  IMS        impB/mucB/samB family
    1.5e-11   44.5   0.1    5.9e-11   42.6   0.1    2.1  1  BRCT_2     BRCT domain, a BRCA1 C-terminus domain
    1.6e-09   38.0   0.4    8.1e-09   35.7   0.4    2.3  1  BRCT       BRCA1 C Terminus (BRCT) domain
      5e-08   33.7   0.0    1.2e-07   32.4   0.0    1.6  1  IMS_C      impB/mucB/samB family C-terminal domain
      2e-05   24.9   0.0    3.9e-05   23.9   0.0    1.4  1  REV1_C     DNA repair protein REV1 C-terminal domain
    7.2e-05   22.7   0.1    0.00019   21.3   0.1    1.8  1  PTCB-BRCT  twin BRCT domain
    8.1e-05   22.8   0.2    0.00028   21.1   0.0    2.0  2  LIG3_BRCT  DNA ligase 3 BRCT domain
    0.00084   19.5   0.0     0.0027   17.9   0.0    1.9  1  IMS_HHH    IMS family HHH motif
  ------ inclusion threshold ------
      0.031   14.6   0.9       0.14   12.5   0.0    2.6  3  mCpol      minimal CRISPR polymerase domain
       0.49   10.2   5.8        1.3    8.8   5.8    1.7  1  SpoIIIAH   SpoIIIAH-like protein


Domain annotation for each model (and alignments):
>> IMS  impB/mucB/samB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.0     2e-27   3.6e-24       1     148 [.     368     556 ..     368     558 .. 0.89

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 2e-27
                 EEETTHHHHHH.HHHT.....T-TTS-EEEEET....TEEEEE-HHHHTTT--TTSBHHHHHTTHT...T-EEEEEE-HHHHHHHHHHHHHHHHH-S.. CS
         IMS   1 iDmdaFyasve.rardp....eLkgkPvvvaqgsekrgiviavsyeArayGvkrgmrikeakklcp...dlivvkvdlekyrraskkileilkrfispk 91 
                 +D+d+F+a v+ + +dp    ++ ++P+vv++g+++ + +++++y Ar+yG+++gm++++a klcp   +li +++++e++++ s+ ++ +l++fi+  
  CCD25210.1 368 VDFDCFFATVAyMYKDPkiicDIDKDPIVVCHGNKN-SDIASCNYIARKYGIRNGMWVSQAAKLCPpgvNLISLPYNFEQFQKKSEIFYHVLENFIT-- 463
                 7**********6566665666789*********887.****************************866568999*********************66.. PP

                 EEEEETTEEEEE-HHHHHHHH-S....................................HHHHHHHHHHHHHHHH.---EEEEEESSHHHHHHH CS
         IMS  92 vekasiDEayldltgleelaese....................................gaalakelrkaikeel.gltvsiGiasnkllAKla 148
                  +++s +    + ++ ++++  +                                      ++ +++r +i++ + g+tvsiG+a++ +lA+l 
  CCD25210.1 464 -QPLSNNNNNNNNNNNNNNNTGQmfdlilpisideaicviilpppsssslteddtmltlTDQIGRNIRSQIFDATnGCTVSIGCANSLVLARLS 556
                 .7888777776666655555555899************************************************967**************996 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.1   3.3e-14   5.9e-11       2      84 ..     177     261 ..     176     262 .. 0.83

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 3.3e-14
      BRCT_2   2 sklFeglrFYindaepspsreklkklIeknGGevvetitsa.vyiviaesneee..laekrkrrvvspkyIkdCikkgkllpleny 84 
                 +++F+++  Yi + +  p r +l++ I  +GG++ ++ + + ++++i++sn +   + e +k++vv+p++I  +i+++kllp +++
  CCD25210.1 177 PQIFKDCIIYI-NGYTIPGRLQLHESIVLHGGKFIHHLSAKkKITHIIASNLTLkkKLEFEKYKVVKPDWIVKSIESKKLLPWQDF 261
                 79*********.556668****************999855544444444444445899************************9986 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.4   4.5e-12   8.1e-09       3      79 .]     177     250 ..     176     250 .. 0.92

  Alignments for each domain:
  == domain 1  score: 35.7 bits;  conditional E-value: 4.5e-12
                 TTTTTTEEEEEEESTSSHHHHHHHHHHHHTTCEE..ESSCSTTSSEEEESSSHSHHHHHHHHHHTTSEEEETHHHHHHH CS
        BRCT   3 ellfhgckfvitgvldnftrdeleelikehGGkv..ttevskktthlvvgepesrslkylealklnipivheewlldci 79 
                 + +f++c+++i ++++   r +l e i +hGGk+  + + +kk+th+++++     + +++    ++++v+++w++++i
  CCD25210.1 177 PQIFKDCIIYI-NGYTIPGRLQLHESIVLHGGKFihHLSAKKKITHIIASNL----TLKKKLEFEKYKVVKPDWIVKSI 250
                 679********.**********************999999*********999....5567777889**********997 PP

>> IMS_C  impB/mucB/samB family C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   6.7e-11   1.2e-07       7     111 ..     665     786 ..     660     790 .. 0.77

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 6.7e-11
       IMS_C   7 epksissektfpepydesk.lkkelreLaeelarrL.rdkglvartitlklrys................dfhasrsatLprptsdtreileaalkLlr 87 
                 e+ks+s+  +++ +++ +k +   + + ++ l+  L  + +  +++itlk+  +                ++ +++s++L+ pt+  + i+ + ++L+ 
  CCD25210.1 665 ERKSFSIDINWGIRFSTIKeVDTFIDRCCAYLINELtTKIKKSTSQITLKVLRRapnapiepakylgcgeCDAFNKSSKLGIPTDEFGVITTEIKSLY- 762
                 799*********9777655455555555555555556444469********4446777777777778887777*************************. PP

       IMS_C  88 rlidepglpirligvsasnlveka 111
                 r+i  p++++r +++++++lv++ 
  CCD25210.1 763 RIIGCPPTELRGLSIQFNKLVDPT 786
                 44444****************544 PP

>> REV1_C  DNA repair protein REV1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   2.2e-08   3.9e-05       1      73 [.     928    1001 ..     928    1013 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 2.2e-08
      REV1_C    1 dvrdlleaWveaf.keegPneeDvealakyLkkvveeerdlekavavlkwlrvlleee.eeskeeeageaWekaf 73  
                  d+ +l+  W++++ k++gP+e+D++ ++kyL+k++ ++++++ + ++ +++   l++  ++  ee++ ++Wek +
  CCD25210.1  928 DISKLVMMWLKNTiKTNGPHEKDLKLFEKYLQKLC-DSNRIHLVLNLANMISTQLNMLpKQFHEETGFQEWEKIL 1001
                  6889999***999789*******************.777888888888777776666677788999999999876 PP

>> PTCB-BRCT  twin BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   1.1e-07   0.00019       2      47 ..     184     231 ..     183     245 .. 0.82

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.1e-07
                 EEEEECB-TTCHHHHHHHHHHTT-EEESSE..ETT-SEEEECSS-CHH CS
   PTCB-BRCT   2 vicvtgysgddrkslqklieamGaeyskdl..tksvTHLicksgeGek 47 
                 +i++ gy+   r +l + i+ +G+++  +l  +k++TH i+ + + +k
  CCD25210.1 184 IIYINGYTIPGRLQLHESIVLHGGKFIHHLsaKKKITHIIASNLTLKK 231
                 799***************************9899*******6666555 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.5e-07   0.00028       3      80 ..     177     254 ..     176     255 .. 0.85
   2 ?   -3.3   0.0       6.3   1.1e+04      64      78 ..     929     943 ..     913     944 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 1.5e-07
   LIG3_BRCT   3 pdiFtgvklfipksv.edykklrRYfiAydGdlvke.ekekeaTHvvvskkeeskkekeksknakaVtaewiwesIkkrt 80 
                 p iF+++ ++i+    + + +l+  ++  +G+ ++  + +k++TH+++s+     k+k + ++ k+V ++wi +sI+ ++
  CCD25210.1 177 PQIFKDCIIYINGYTiPGRLQLHESIVLHGGKFIHHlSAKKKITHIIASNL--TLKKKLEFEKYKVVKPDWIVKSIESKK 254
                 579********975549999************9987356677*******98..67777788889************9875 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.3
   LIG3_BRCT  64 akaVtaewiwesIkk 78 
                  ++ +  w++++Ik+
  CCD25210.1 929 ISKLVMMWLKNTIKT 943
                 555667899999986 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.5e-06    0.0027       4      30 ..     577     604 ..     576     605 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 1.5e-06
     IMS_HHH   4 vkefLwplpitkipGiGgklgek.Lekl 30 
                   efL+++++ ++pG+G +l +k L+k+
  CCD25210.1 577 FDEFLSSFKLDDLPGVGHSLVAKlLNKF 604
                 679********************99886 PP

>> mCpol  minimal CRISPR polymerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       6.8   1.2e+04      68      88 ..     104     124 ..      89     130 .. 0.59
   2 ?   12.5   0.0   7.8e-05      0.14      74     112 ..     531     569 ..     512     571 .. 0.82
   3 ?   -2.4   0.0       3.4     6e+03      11      48 ..     956     993 ..     955     995 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.8
       mCpol  68 dllvelsrvyqkitgltvSiG 88 
                 d+ ++ +r+++ ++ +t+SiG
  CCD25210.1 104 DQNSSKKRLLNDTKSVTSSIG 124
                 444444555555566666666 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 7.8e-05
       mCpol  74 srvyqkitgltvSiGvGktlrealiaLkkAkskgknrvv 112
                 s++++++ g tvSiG  ++l  a ++Lk+Ak +g ++v+
  CCD25210.1 531 SQIFDATNGCTVSIGCANSLVLARLSLKMAKPNGYHAVL 569
                 57899999************************9988775 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.4
       mCpol  11 kklealllsndeeeleklskevkeaikklkkllkdelg 48 
                 k+l++l  sn ++ + +l++ + ++++ l k +++e+g
  CCD25210.1 956 KYLQKLCDSNRIHLVLNLANMISTQLNMLPKQFHEETG 993
                 57888888999999999999999999999999988876 PP

>> SpoIIIAH  SpoIIIAH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   5.8   0.00075       1.3      28     124 ..      66     163 ..      21     169 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00075
                 XXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXX--HHHHHHHHHHHHHHHHH CS
    SpoIIIAH  28 kaaetaeteqeesekaeigd........dkekdessaasaeaesssetesesseksdiassdedeadeltsetasaaasasdyfaeakleReqkrsknk 118
                 ka+++++++ ++s  ++++d              s++++++a++   ++s++   +d +s  +   ++ t++t++++ s +dyf + kl  +q+ +   
  CCD25210.1  66 KAKNENQNDINSSFLSNLSDdslidyinR----FSQDEKKKADQ---NSSKKRLLNDTKSVTSSIGNTSTTNTNVNDYSREDYFHDKKLRQDQQDEHLR 157
                 55555555555555666666655533321....22222222222...22233333333333333333358888999******************99998 PP

                 HHHHHH CS
    SpoIIIAH 119 etLqei 124
                 ++++++
  CCD25210.1 158 NQYRNL 163
                 888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1368  (0.076301); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 7062.51
//
Query:       CCD25211.1  [L=540]
Description: hypothetical protein NDAI_0E03940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.8e-164  545.0   3.0   7.4e-164  544.7   3.0    1.1  1  PK         Pyruvate kinase, barrel domain
    8.3e-32  109.9   0.0    1.9e-31  108.7   0.0    1.7  1  PK_C       Pyruvate kinase, alpha/beta domain
     0.0014   17.8   0.2     0.0028   16.8   0.1    1.6  2  HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  544.7   3.0  1.2e-167  7.4e-164       2     346 ..      59     403 ..      58     405 .. 0.98

  Alignments for each domain:
  == domain 1  score: 544.7 bits;  conditional E-value: 1.2e-167
                 --SEEEEEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS.-EEEEE---S-EBB--BTTCSSSEEE-TTSEEEEE-SCT CS
          PK   2 rrtkivctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkk.vaillDtkGpeirtgllkdgkkdielkegdklkvsldek 99 
                 r+t+i++t+GP+s+s+e+++ l++aGln++r+nfshG+he h+++i+n+ ++e    ++ ++i+lDtkGpeirtg+++d +kd+ +k+g+++ +++d k
  CCD25211.1  59 RKTSIIGTIGPKSNSIEMITSLRDAGLNIIRMNFSHGTHEFHSSVIDNAVQSEFLDDGRpLGIALDTKGPEIRTGITRD-NKDYAVKQGHEMLFTTDPK 156
                 9***********************************************999988777777*******************.78***************** PP

                 CTTTBBTTEEEBS-TTHHHHS-TTEEEEETTTTEEEEEEEEETTEEEEEEESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEETTE CS
          PK 100 lkeegdeelialdyknivkdvevGktilvdDGllslkvlevdeekeleveventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaasfv 198
                 +ke +d+++++ldy ni+k+++vGk+i+vdDG+ls+kvl++ ++++l+v+v n+gv++s+kgvnlpgt+vdlp+lsekD  dl+fg+++gv++i+asf+
  CCD25211.1 157 YKEICDDQVMYLDYVNITKVISVGKIIYVDDGVLSFKVLKIIDKENLKVQVLNDGVISSHKGVNLPGTDVDLPTLSEKDMLDLEFGIEKGVHMIFASFI 255
                 *************************************************************************************************** PP

                 -SHHHHHHHHHHHTCCCTTSEEEEEE-SCHHHHTHHHHHHHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGGTSSS--HHH CS
          PK 199 rkasDvkevrevleeegkeikiiakienqegvenldeileasDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmiknPrptrae 297
                 r+a+Dv ++re l+eegk+ikii+kienq+gv+n+deil+++DgimvarGDlGieip+++vl+vqk+li+kcnl+gkpvi+atqmlesm++nPrptrae
  CCD25211.1 256 RSAKDVLTIREFLGEEGKDIKIISKIENQQGVNNFDEILKVTDGIMVARGDLGIEIPTPQVLAVQKRLIAKCNLVGKPVICATQMLESMTYNPRPTRAE 354
                 *************************************************************************************************** PP

                 HHHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHHTS-HHH CS
          PK 298 vsDvanavlDGtDavmLsgetakGkyPveavkamaevaleaekalkelk 346
                 vsDv+na+lDG+D++mLsgetakG+yP+eavk+m+++al ae+a+++l+
  CCD25211.1 355 VSDVGNAILDGADCIMLSGETAKGDYPIEAVKMMTQTALVAENAIPYLA 403
                 ********************************************99865 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   0.0   3.2e-35   1.9e-31       1     117 []     420     538 ..     420     538 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.7 bits;  conditional E-value: 3.2e-35
                 HHHHHHHHHHHHHHT-SEEEEE-SSSHHHHHHHHT-TSSEEEEEESHHHHHHHHHHCTTEEHHH.HHHHH.......TTSHHHHHHHHHHHTTSS-STS CS
        PK_C   1 eaiakaaveaaeelgakaIvvltesGetArliskyrpkvpiiavtpneltarqlalyrGvypvlvekakt....aestdellreavkvakeaglvkkgd 95 
                 e++a + v+a  e++akaI+vl++sGetArl+skyrp++pii vt+n+ tar ++lyrGvyp+ +e         ++++++l+ ++++ ke ++++kgd
  CCD25211.1 420 ETVAASSVAAVFEQNAKAIIVLSTSGETARLCSKYRPNCPIILVTRNRGTARFSHLYRGVYPFVYELP-PledwVKDVEKRLNFGIEMGKELNILQKGD 517
                 799************************************************************99754.2578899999999999************** PP

                 EEEEEE-SSSS..SS--EEEEE CS
        PK_C  96 evvvtaGtpkgesgttNtlrVv 117
                  vv ++G + g  g++Ntl+V+
  CCD25211.1 518 AVVTIQGFKCG-VGHSNTLHVL 538
                 ***********.*******995 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   4.7e-07    0.0028      79     160 ..     240     313 ..     226     339 .. 0.78
   2 ?   -4.0   0.0       1.1   6.5e+03      16      32 ..     360     376 ..     356     377 .. 0.80

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.7e-07
                 G.HHHTTSSEEEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTT- CS
   HpcH_HpaI  79 e.vldlgaqvvlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadlgt 160
                 e  +++g+  +   ++ +a+++l++ + l e         k ++++  iE ++gv+n +eI++v   dg++++  Dl  ++ t
  CCD25211.1 240 EfGIEKGVHMIFASFIRSAKDVLTIREFLGEEG-------KDIKIISKIENQQGVNNFDEILKV--TDGIMVARGDLGIEIPT 313
                 455677888888888888888888888887777.......8999*****************977..47777778888776655 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.1
                 HHCTC--SEEEEESSTS CS
   HpcH_HpaI  16 kaaiagaDsvliDlEda 32 
                 +a + gaD +++ +E a
  CCD25211.1 360 NAILDGADCIMLSGETA 376
                 56778999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3745.28
//
Query:       CCD25212.1  [L=545]
Description: hypothetical protein NDAI_0E03950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-72  242.4   0.0    5.2e-72  241.9   0.0    1.2  1  ATP-synt_ab    ATP synthase alpha/beta family, nucleotide-bin
    1.8e-46  157.5   0.6    3.2e-46  156.7   0.6    1.4  1  ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal doma
    3.6e-16   59.4   1.4    1.2e-15   57.8   1.4    1.9  1  ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel do
  ------ inclusion threshold ------
      0.043   13.5   0.0       0.11   12.2   0.0    1.6  1  Tex_N          Tex-like protein N-terminal domain


Domain annotation for each model (and alignments):
>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.9   0.0   1.2e-75   5.2e-72       1     213 []     186     409 ..     186     409 .. 0.97

  Alignments for each domain:
  == domain 1  score: 241.9 bits;  conditional E-value: 1.2e-75
                  SSHHHHHHS-EBTT-EEEEEESTTSSHHHHH.HHHHHHSSTS.......S.EEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEEEEETTS-HHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.......x.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 GirvlDalfpivqGqrtlipgafgvGktvis.qslskqsnsd.......d.aiiyvgiGergnevaevleefpegtimkrtvlvantsnepvaareas 89 
                  G++++Dal+pi++Gqr+li+g++++Gkt+++ +++++q++ +       + +++yv+iG+++++va+++++++++++++++++va+t++e++ +++++
   CCD25212.1 186 GLKAVDALVPIGRGQRELIIGDRQTGKTAVAlDTILNQKRWNegkdeskKlYCVYVAIGQKRSTVAQLVQTLEQHNALQYSIIVAATASEAAPLQYLA 283
                  899***************************99*****97666889999768*********************************************** PP

                  HHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTTSBEGGGSBTTHHHHHHHHHTTSEEE..TSSEEEEEEEEEEE-GGCSTTSHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  90 iytgitlAEyfrdqgknvlliadslsrwaeAlreislrlgempadqgypaylgaklaslyERagka..pdrtGsvtivaavspaggDfsdpvttatlg 185
                  ++t+ +++E+frd+gk++l+i+d+ls++a A+r++sl+l+++p++++yp+++++ +++l+ERa+k+  ++  Gs+t++++++++ggD+s++++t++++
   CCD25212.1 284 PFTAASIGEWFRDNGKHALIIYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKMseKEGGGSLTALPIIETQGGDVSAYIPTNVIS 381
                  ******************************************************************665559************************** PP

                  HSSEEEEB-HHHHHTTBSSSBCTTTEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab 186 itdgfivLdkklaqrkhfPainvlvSvS 213
                  itdg+i+L+ +l+ ++++Painv+ SvS
   CCD25212.1 382 ITDGQIFLEAELFYKGIRPAINVGLSVS 409
                  **************************99 PP

>> ATP-synt_ab_C  ATP synthase alpha/beta chain, C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.7   0.6   7.2e-50   3.2e-46       1     126 []     416     541 ..     416     541 .. 0.99

  Alignments for each domain:
  == domain 1  score: 156.7 bits;  conditional E-value: 7.2e-50
  ATP-synt_ab_C   1 QtkamkkvagsLklelaqYrEleaFaqFgsdLDeatkkqLerGerlvelLkQkqysplsveeqviilyaatngllddipvekvkefekelleylee 96 
                    Q+ka+k+vagsLkl laqYrE++aFaqFgsdLD++tk++L rGerl++lLkQ+qyspls eeqv ++ya+ ng+ld++++++v efe+++l++l++
     CCD25212.1 416 QVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQLLKQSQYSPLSAEEQVPLIYAGVNGYLDEVDISRVGEFESSFLAFLKS 511
                    9*********************************************************************************************** PP

  ATP-synt_ab_C  97 ekkeileeieekkklsdeleeklkeaikef 126
                    +++eil++i++k++l++el ++lk+a+++f
     CCD25212.1 512 SHEEILSDIRDKGELTKELMAALKSATESF 541
                    *************************99876 PP

>> ATP-synt_ab_N  ATP synthase alpha/beta family, beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   1.4   2.6e-19   1.2e-15       4      69 .]      64     129 ..      62     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 2.6e-19
                    EETTEEEEESSTSCETCTTEEEEECCETCSTEEEEEEEEEETTEEEEEESS-STTBBTTSEEEEES CS
  ATP-synt_ab_N   4 viGpvvdvefgigrlpgiynalevelvefgtlllgvalnlgedkVrvivmgstdGlsrGteVkrTG 69 
                    ++G v+ v++gi+r+ g++n+ + elvef+++++g+alnl+ ++V+++ +gs++ +++G+ VkrTG
     CCD25212.1  64 ETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTG 129
                    79***************************************************************9 PP

>> Tex_N  Tex-like protein N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.4e-05      0.11      36      87 ..     487     539 ..     484     541 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.4e-05
       Tex_N  36 tggldeeqlreieerley.lrelekrkeevlksieeqgklteeLkkkieaakt 87 
                  g lde+ + ++ e  ++ l  l++  ee+l+ i+++g+lt+eL +++++a++
  CCD25212.1 487 NGYLDEVDISRVGEFESSfLAFLKSSHEEILSDIRDKGELTKELMAALKSATE 539
                 5889999999998865551688999************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       413  (0.0230353); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4047.67
//
Query:       CCD25213.1  [L=777]
Description: hypothetical protein NDAI_0E03960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-60  203.8   0.2    3.9e-60  203.0   0.2    1.5  1  Peptidase_M41    Peptidase family M41
    8.1e-44  149.2   0.1    2.2e-43  147.8   0.0    1.8  1  AAA              ATPase family associated with various cellul
    9.8e-07   28.5   0.0    2.7e-06   27.1   0.0    1.8  1  AAA_lid_3        AAA+ lid domain
    2.5e-05   24.3   0.0    0.00014   21.9   0.0    2.3  1  AAA_5            AAA domain (dynein-related subfamily)
    5.3e-05   23.4   0.0    0.00018   21.6   0.0    2.0  1  AAA_2            AAA domain (Cdc48 subfamily)
    0.00015   21.6   0.0    0.00049   19.9   0.0    1.8  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    0.00018   21.8   0.3      0.026   14.8   0.3    3.0  1  AAA_22           AAA domain
    0.00029   20.2   0.0    0.00072   18.9   0.0    1.6  2  TIP49            TIP49 P-loop domain
    0.00092   19.6   2.4     0.0026   18.2   0.7    2.4  1  AAA_16           AAA ATPase domain
     0.0019   18.3   0.0     0.0053   16.8   0.0    1.7  1  AAA_14           AAA domain
  ------ inclusion threshold ------
      0.013   14.8   0.0       0.14   11.5   0.0    2.3  2  ATPase           KaiC
      0.014   15.2   0.0      0.035   13.8   0.0    1.7  1  IstB_IS21        IstB-like ATP binding protein
       0.02   14.9   0.1       0.29   11.1   0.1    2.5  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.026   15.1   0.2      0.098   13.2   0.0    2.1  1  AAA_18           AAA domain
      0.041   13.3   0.4      0.089   12.2   0.4    1.5  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.045   12.8   0.8        4.7    6.2   0.0    2.3  2  Parvo_NS1        Parvovirus non-structural protein NS1
      0.055   13.0   0.2       0.14   11.7   0.2    1.7  1  AAA_7            P-loop containing dynein motor region
      0.068   13.1   1.4       0.74    9.7   0.1    2.7  3  NTPase_1         NTPase
      0.071   12.3   0.0       0.15   11.2   0.0    1.5  1  DUF815           Protein of unknown function (DUF815)
      0.079   12.7   0.0       0.26   11.0   0.0    1.9  1  AAA_30           AAA domain
      0.094   12.3   0.1       0.82    9.2   0.0    2.2  2  AAA_25           AAA domain
       0.12   12.8   0.1       0.45   10.9   0.0    2.0  2  AAA_17           AAA domain
       0.12   11.8   0.3       0.32   10.4   0.3    1.6  1  PhoH             PhoH-like protein
       0.12   12.0   0.2       0.36   10.5   0.0    1.9  2  AAA_24           AAA domain
       0.13   12.0   0.0       0.41   10.3   0.0    1.8  1  Sigma54_activat  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.0   0.2   5.5e-63   3.9e-60       1     191 []     549     728 ..     549     728 .. 0.97

  Alignments for each domain:
  == domain 1  score: 203.0 bits;  conditional E-value: 5.5e-63
                    XX--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS-----------TSS--BHHHHHHHHHHHHHHHHHHHHHHH..S-BGGGHHHHHHH CS
  Peptidase_M41   1 rvisekekklvAyHEaGHalvglllkeadpveKvtiiPRgqalGltlslPeedklsltkeellarlavllGGraaEelifg..evttGasnDleka 94 
                    +v++e+ kk++A+HEaGHa+++ ++  a+p++K+ti+PRg+alG+t++lPe+dk+ +t++e+larl+v++GG++aEelifg  +vt+G+ +Dl+ a
     CCD25213.1 549 MVMTEATKKATAFHEAGHAIMAKYTAAASPLYKATILPRGNALGITFQLPEMDKVDITRKECLARLDVCMGGKIAEELIFGedNVTSGCGSDLRTA 644
                    6899*****************************************************************************999************ PP

                    HHHHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHHH CS
  Peptidase_M41  95 tkiarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeiee 190
                    t++ar+m+te+Gm+d++Gp++l e+ +             ++s++++e+ d+ev ++++ea +r++++l++k+ el++la+ L+e+Etlda+e+++
     CCD25213.1 645 TNMARAMITEYGMNDEVGPINLAENWN-------------TWSNDIQERADNEVIKVLKEAETRCRQLLKRKNVELHRLAQGLVEYETLDAKEMDR 727
                    *********************888554.............69***************************************************997 PP

                    H CS
  Peptidase_M41 191 l 191
                    +
     CCD25213.1 728 I 728
                    6 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.8   0.0   3.1e-46   2.2e-43       1     131 [.     338     468 ..     338     469 .. 0.96

  Alignments for each domain:
  == domain 1  score: 147.8 bits;  conditional E-value: 3.1e-46
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkk 98 
                 vll+GppGtGKTllaka a+e++v+f+++sgse+ + yvg ++k+irelf++a++++ p i+fiDEida++++r  +++++++++++nqLl eldg+kk
  CCD25213.1 338 VLLTGPPGTGKTLLAKATASESNVKFFTMSGSEFDEVYVGVGAKRIRELFNQARQNS-PAIIFIDEIDAIGGKRsGKDDQGFARQTLNQLLVELDGFKK 435
                 79******************************************************9.****************6666999****************** PP

                 SSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  99 keskvivigatnrpdkldpallr.gRfdrkieie 131
                 +e+ +i+igatn p++ld+allr gRfd++++i+
  CCD25213.1 436 DEG-IIIIGATNFPESLDKALLRpGRFDKIVNID 468
                 877.**************************9987 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   3.8e-09   2.7e-06       1      44 [.     491     534 ..     491     535 .. 0.97

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 3.8e-09
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 dvd   +A+ T+G SGA+l +l++ Aa  A +++  e++m ++e
  CCD25213.1 491 DVDCTLIARGTPGLSGAELFNLVNQAAVYACQQNASEVNMLHLE 534
                 899999**********************************9987 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.9e-07   0.00014       1      76 [.     337     405 ..     337     410 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 1.9e-07
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEver 76 
                 +vlL GppGtgK+ la+  a+  n +++++ ++++ +    +g  +i          +l ++ar  +++i+++DE++ 
  CCD25213.1 337 GVLLTGPPGTGKTLLAKATASESNVKFFTMSGSEFDEVYVGVGAKRI---------RELFNQARqnSPAIIFIDEIDA 405
                 59******************************996555555555555.........8888888888999999999986 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.6e-07   0.00018       6      93 ..     338     421 ..     335     449 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 2.6e-07
                 EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.EEEEETGGG----..---------H CS
       AAA_2   6 illlgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.ivllDEidKihpk..essgadvSre 93 
                 +ll+gp g+Gkt+laka+a+  +v    k+ ++  se+ e   v   v    + + ++++++++  i+++DEid i  k  ++  +   r+
  CCD25213.1 338 VLLTGPPGTGKTLLAKATASESNV----KFFTMSGSEFDE---VYVGVGAKRIRELFNQARQNSPaIIFIDEIDAIGGKrsGKDDQGFARQ 421
                 6899*******************8....999999999999...77777777777766666555546**********998444444444555 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   6.8e-07   0.00049      35      94 ..     337     404 ..     327     409 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 6.8e-07
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvlek......agdlaalltnleek..dvlfideih 94 
                  vll+GpPG Gkt lak  a+e +vk+ + sg   ++      a+ +  l+++ +++   ++fidei 
  CCD25213.1 337 GVLLTGPPGTGKTLLAKATASESNVKFFTMSGSEFDEvyvgvgAKRIRELFNQARQNspAIIFIDEID 404
                 69******************************988762222223455566666554422588888886 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   3.7e-05     0.026       8      38 ..     338     373 ..     335     451 .. 0.57

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.7e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee......e 38 
                 +++tG++GtGKT+l++  +++  ++++ ++      e
  CCD25213.1 338 VLLTGPPGTGKTLLAKATASES-NVKFFTMsgsefdE 373
                 589*************999985.34443333433330 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     1e-06   0.00072      49      88 ..     334     371 ..     293     393 .. 0.82
   2 ?   -3.8   0.0       7.6   5.5e+03      81     108 ..     521     550 ..     516     556 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  49 aGravLlaGpsgtGktalaiaiskelgedvpfvalsgsev 88 
                   ++vLl+Gp+gtGkt la a + e   +v+f ++sgse+
  CCD25213.1 334 MTKGVLLTGPPGTGKTLLAKATASES--NVKFFTMSGSEF 371
                 349******************99985..59********85 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7.6
                 XXXXXXXX..XXXXXXXXXXXXXXXXXXXX CS
       TIP49  81 valsgsev..yslevkktevltqalrksig 108
                 ++ ++sev    le  k  +l+ a rks+ 
  CCD25213.1 521 CQQNASEVnmLHLEWAKDKILMGAERKSMV 550
                 677788872246788999999999999975 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.7   3.7e-06    0.0026      25      95 ..     336     396 ..     313     442 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.7e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaele 95 
                   vll+G++G+GK+ l+++ + + + + +++++g   +         +     + + +r+l ++a++++++
  CCD25213.1 336 KGVLLTGPPGTGKTLLAKATASESNVK-FFTMSGSEFDE--------VYVGVGA-KRIRELFNQARQNSPA 396
                 78***************9999755544.33333333333........3333323.4444444443333333 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.4e-06    0.0053       5      76 ..     338     406 ..     335     452 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.4e-06
      AAA_14   5 lvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqev 76 
                 +++tG+  +GKT l+k  ++e+     +++ ++  + ++      +k +++++++++++   ++f+DEi  +
  CCD25213.1 338 VLLTGPPGTGKTLLAKATASESN---VKFFTMSGSEFDEVYVGVGAKRIRELFNQARQNSPAIIFIDEIDAI 406
                 89*****************9988...667777666666544333333344455544556899*******877 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00019      0.14      17      38 ..     333     354 ..     311     366 .. 0.79
   2 ?    0.2   0.0      0.53   3.8e+02     122     152 ..     397     431 ..     377     445 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00019
      ATPase  17 pegrvvlitGepGtGKtifalq 38 
                  + + vl+tG pGtGKt++a+ 
  CCD25213.1 333 VMTKGVLLTGPPGTGKTLLAKA 354
                 456779*************975 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.53
      ATPase 122 rvviDsitgl....ayeekeavaReilrqlvrvlk 152
                  + iD i+++    + ++++  aR++l ql+ +l 
  CCD25213.1 397 IIFIDEIDAIggkrSGKDDQGFARQTLNQLLVELD 431
                 55555555554314556667779999999988775 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.8e-05     0.035      48      70 ..     336     358 ..     293     403 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.8e-05
   IstB_IS21  48 enivllGpsGvGKshlaialgve 70 
                 ++++l+Gp+G+GK+ la a + e
  CCD25213.1 336 KGVLLTGPPGTGKTLLAKATASE 358
                 6799*************998765 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.94   6.7e+02      56      81 ..      79     104 ..      49     123 .. 0.65
   2 ?   11.1   0.1   0.00041      0.29       9      46 ..     329     362 ..     316     371 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.94
                 EEEEEE..SS.EEEEE-TT-SSTHHHH CS
        TsaE  56 veeYelekeg.lyHfDlYRledeeele 81 
                  +++++++++  +H+D +R  d e++e
  CCD25213.1  79 YRRFHTNSKTsSIHMDSWRN-DRERVE 104
                 4455554444699******6.444443 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00041
                 HHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   9 algkklakalgdvilLeGdLGaGKTtlvrglakalgve 46 
                 +lg  +    ++ +lL+G+ G+GKT l+++ a++ +v+
  CCD25213.1 329 HLGGVM----TKGVLLTGPPGTGKTLLAKATASESNVK 362
                 344333....447******************9998776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   0.00014     0.098       1      24 [.     338     361 ..     338     427 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 0.00014
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf 24 
                 +lltG+pG+GKt lak+ +++ ++
  CCD25213.1 338 VLLTGPPGTGKTLLAKATASESNV 361
                 79**************98666433 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   0.00012     0.089      25      42 ..     338     355 ..     331     358 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   +ll+GppG+GKt+lak+ 
    CCD25213.1 338 VLLTGPPGTGKTLLAKAT 355
                   89*************975 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.2     0.021        15      22     100 ..      67     149 ..      49     154 .. 0.68
   2 ?    6.2   0.0    0.0066       4.7     117     135 ..     338     356 ..     333     366 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.021
   Parvo_NS1  22 vteedWaaidsesYlrlsrsragrr.qienaleqakirmfstkaaldilakkevt....adfdieenriykllslngynpvevg 100
                 vt++  ++     Y+r++++++ +   + +  ++ ++ ++++k    +la++e+      ++  ++ ++ykll +++y   +v+
  CCD25213.1  67 VTKNNICTSS-LLYRRFHTNSKTSSiHMDSWRNDRERVETTKKITASMLAHEEQIankkIHDSQTQHDFYKLLLKSNYPQYVVA 149
                 5666666655.77788777666555133333444444455556666677777777666556778889***********877776 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0066
   Parvo_NS1 117 vwfyGpantGktnlaeaIa 135
                 v+++Gp+ tGkt la+a a
  CCD25213.1 338 VLLTGPPGTGKTLLAKATA 356
                 899************9976 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2    0.0002      0.14      34      61 ..     336     363 ..     332     405 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0002
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkek 61 
                 k vll+Gp GtGKt+++k + ++ + + 
  CCD25213.1 336 KGVLLTGPPGTGKTLLAKATASESNVKF 363
                 789**************99888777443 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1     0.001      0.74       2      36 ..     338     372 ..     337     384 .. 0.78
   2 ?   -1.0   0.0         2   1.4e+03      86     104 ..     384     403 ..     355     406 .. 0.67
   3 ?    0.7   0.0      0.59   4.2e+02     102     155 ..     659     710 ..     641     718 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.001
                 EEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEE CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgvkvgGfyte 36 
                 v++TGppG+GKt l k  +++ + + ++++G    
  CCD25213.1 338 VLLTGPPGTGKTLLAKATASESNVKFFTMSGSEFD 372
                 78**********99999888877777777665555 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2
                 HHHHHHHH.HHH-EEEE--- CS
    NTPase_1  86 lealrkal.seadviviDEi 104
                  e +++a  +++ +i iDEi
  CCD25213.1 384 RELFNQARqNSPAIIFIDEI 403
                 4444555435666******9 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.59
                 ---STTGGG-..HHHHHHHHHHHTTTSEEEEE--SS--SHHHHHHHT-TT-EEEE- CS
    NTPase_1 102 DEiGkmElks..kkfkeaveevLksekpvlavihrrkdlalveeirerkdvkvfev 155
                 DE+G++ l    +++++ ++e    ++ v+ v++++  +   +++ +rk+v+++++
  CCD25213.1 659 DEVGPINLAEnwNTWSNDIQER--ADNEVIKVLKEA--ETRCRQLLKRKNVELHRL 710
                 8888888753113455555543..566678888888..446666777777777665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00021      0.15      18      81 ..     292     363 ..     278     404 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
      DUF815  18 pveevdevklddLvgidkqkealve......nte..qfleglpannvLLwGarGtGKSslvkallneyaeeg 81 
                 + +  ++v+++d++g d+ + +l e      n    ++l g  ++ vLL+G  GtGK  l ka+ +e + + 
  CCD25213.1 292 STDVENNVTFNDVKGCDEARFELEEivdflkNPDkyKHLGGVMTKGVLLTGPPGTGKTLLAKATASESNVKF 363
                 555667777888888887776654311122144311568899*********************999877655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00037      0.26      21      97 ..     338     403 ..     327     412 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00037
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlkgrarlepgtllivDEa 97 
                 ++ltGp+GtGKt + ka +      + +v  ++ +g   +++   +g+ a++i +l ++ ++    ++  ++ +DE+
  CCD25213.1 338 VLLTGPPGTGKTLLAKATAS-----ESNVKFFTMSGSEFDEVY--VGVGAKRIRELFNQARQ----NSPAIIFIDEI 403
                 789*********98776543.....345777777777777776..56667777777755554....34567777776 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0012      0.82      34      53 ..     336     355 ..     309     362 .. 0.76
   2 ?    0.1   0.0      0.73   5.2e+02     129     172 ..     382     426 ..     366     442 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0012
      AAA_25  34 elallaGapgtGKttlaldl 53 
                 + +ll+G+pgtGKt la   
  CCD25213.1 336 KGVLLTGPPGTGKTLLAKAT 355
                 4479***********99655 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.73
      AAA_25 129 dvdaleaaieevegvrlvviDplsralgg.densnsdv.galveal 172
                  +++l +++++ + ++ + iD ++++ g  + +++    ++ +++l
  CCD25213.1 382 RIRELFNQARQ-NSPAIIFIDEIDAIGGKrSGKDDQGFaRQTLNQL 426
                 57889999999.88**********9999964444444347777665 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00063      0.45       1      53 [.     341     394 ..     341     425 .. 0.80
   2 ?   -2.3   0.0       7.5   5.3e+03      89     123 ..     670     703 ..     663     707 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00063
                 EE-TTSSHHHHHHHHHHHHTEEEEEH.HHHHHHHHHTTTSHSSHHHHCTSHHHH CS
      AAA_17   1 lGgPGsGKgtqceklvekygfthlsa.Gdllreeakrgglakardemrklplee 53 
                 +G+PG GK+ +++  + + +++++++ G+ + e+    g+++ r+ ++++ ++ 
  CCD25213.1 341 TGPPGTGKTLLAKATASESNVKFFTMsGSEFDEVYVGVGAKRIRELFNQARQNS 394
                 7***********************997888888888888877777777665544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.5
                 EESSHHHHHHHH..SEEEEEE--HHHHHHHHHHHT CS
      AAA_17  89 ldglpkevleelkpdaiilleadpeeilerrlkdr 123
                 + ++  +++e ++ ++i +l  ++e+ ++++lk++
  CCD25213.1 670 WNTWSNDIQERADNEVIKVL-KEAETRCRQLLKRK 703
                 56666666666644444444.45556777777765 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00045      0.32      22      42 ..     338     358 ..     326     365 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00045
                 EEEE--TTSSTTHHHHHHHHH CS
        PhoH  22 vfaiGpaGtGKtylavalave 42 
                 v  +Gp GtGKt+la a+a e
  CCD25213.1 338 VLLTGPPGTGKTLLAKATASE 358
                 6789************99965 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.4   4.6e+03      62     119 ..     266     322 ..     243     326 .. 0.65
   2 ?   10.5   0.0   0.00051      0.36       4      29 ..     337     364 ..     334     411 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.4
      AAA_24  62 eladyktlviDtideleelclaevirqnekaeskedkgdgkGygelaeefrrllkklq 119
                  l +   +v+D+ + + +     +i+ + + e++  ++d+kG +e++ e+ ++++ l+
  CCD25213.1 266 GLTGVLNYVVDNSSLINNTDASKIIDSTDV-ENNVTFNDVKGCDEARFELEEIVDFLK 322
                 555555667777666666556666777777.666788888888888888888887665 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00051
      AAA_24   4 kiliyGpsgiGKTtlakel..gpkplfi 29 
                  +l++Gp+g+GKT lak    + ++ f+
  CCD25213.1 337 GVLLTGPPGTGKTLLAKATasESNVKFF 364
                 589*************998655554444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00057      0.41      24      47 ..     337     360 ..     321     373 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00057
                      -EEEECSTTSSHHHHHHHHHHHST CS
  Sigma54_activat  24 svlitGesGtGKellaraiheask 47 
                       vl+tG  GtGK+lla+a  ++s+
       CCD25213.1 337 GVLLTGPPGTGKTLLAKATASESN 360
                      69***************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.73u 0.28s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 5177.63
//
Query:       CCD25214.1  [L=890]
Description: hypothetical protein NDAI_0E03970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-135  454.1  49.7   2.1e-135  453.3  49.7    1.3  1  Cnd2      Condensin complex subunit 2
    0.00034   20.8   0.1    0.00034   20.8   0.1    3.2  3  CNDH2_N   Condensin II complex subunit CAP-H2 or CNDH2, N-ter


Domain annotation for each model (and alignments):
>> Cnd2  Condensin complex subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.3  49.7  2.3e-139  2.1e-135      72     764 ..      30     877 ..       2     878 .. 0.71

  Alignments for each domain:
  == domain 1  score: 453.3 bits;  conditional E-value: 2.3e-139
        Cnd2  72 mkrvpilanfeewmklatdNKInakNsWnlaLIDyfhdmsLLkegds.vNFqkAsctLDgcvKIYtsRVDSvatetgkllsgLadstekkkkdneeeed 169
                  +r +++anfeew+k+atdNKIn  NsWn+aLIDyf d+++L++ ++ +NFqkAs+tLDgcvKIY+sRVDSv  etgkllsgLa++++++k++n++ ++
  CCD25214.1  30 TNRSTVMANFEEWIKMATDNKINSRNSWNFALIDYFYDLNVLRDAENnINFQKASATLDGCVKIYSSRVDSVTSETGKLLSGLAQKKANNKDRNKNAGN 128
                 468899**************************************9977***************************************999998884444 PP

        Cnd2 170 eeegdeeeeeeegedgeek...................................kkkkkKkqrsseatlaksfeslqlkklelefavDPLFkkasAdfD 233
                 +++ + ++++++g++ +++                                   + +++  +r  e+tl  +f+sl++k+l++e+++DPLFkka  dfD
  CCD25214.1 129 NSDPNGNTNNSSGSNDNSNqadddasnsdndsiqidpltglpigrddnldenghNTRRRVYNRVLETTLV-DFDSLKMKELDQELNIDPLFKKALVDFD 226
                 4444444444444444433457777788**********************99844444455677777776.9*************************** PP

        Cnd2 234 eggakglLLNhLsidsegrivfDssddaedaasqteeeeeeeeeeedveidlasLaa....................................rffpdl 296
                 eggak+lLLN+L id+++r++fD+s   +d+++ ++e + e+ ++e++e +l+++++                                      f + 
  CCD25214.1 227 EGGAKSLLLNTLNIDNSIRVIFDASM--KDINNADNEVDGESADREEAEEELKDMENieednisennnsaysanntsihsgfapiedeilslgMDFINF 323
                 ************************87..55554444444444444444444444444444666667788888888888888888888877555223444 PP

        Cnd2 297 erleeldicpslknfd..lgdapsgsldipflkapedwrqdkddleaed.e.lgd.asgilldddnaagfdddddgllnafdlggdagfgeggeaware 390
                 ++l   +i +s+++++  + d    +  + f+   ++++ d++ +e+e  e + d  +    ++d++ g +              + +++ ++e+ +r+
  CCD25214.1 324 KQLSVCEISSSIHQLRnvVQD---INKAKTFIDSVNSNKFDNFLTEEELqEtIPDnVTNNDDNNDFDTGIEK-------------ELEYSIQKEEENRD 406
                 444444444444444332333...222333333333333333333332222222201111111122222221.............22233333333333 PP

        Cnd2 391 aalepq...............................dede.gevedn.deyavslsrkqkkekveelrdilsyfdqalqknWagPehWrirrik.... 452
                  a+ p                                d d+ + ++d+ ++ ++ +s+      +e+  d++syfd+ l+knW+g ehW++r+ k    
  CCD25214.1 407 EAVGPValdlgaddneddivgggqphsrindgrqtiyD-DNgDGDGDEgNDSNIMMSS-----IFEQ--DLMSYFDENLKKNWRGREHWKVRNFKknnk 497
                 33333322222211111222222222433322333321.1212222222355666664.....4466..8999*********************77999 PP

        Cnd2 453 ..................................dvnkseeaakkkrkekepfeidFeapldesvaealftq......assnsaislpkkqlkkksrnl 511
                                                   +++++++++ ++ +++++feidF a+ d +++e++f +      ++ + +i +p k+  ++++ l
  CCD25214.1 498 lpkllgsieeereggtpqlgedgnpiepskssslNTSSTSTKNLQQSAQQQHFEIDFFAQDD-TLEEKVFDNakgngkNKRKVNIDMPIKNRINDAHFL 595
                 **************************998888877777776777888***********9977.******99856665566667777777777777777* PP

        Cnd2 512 LPddkhfnskqLlklflkPkarlsrr...................................keeveegem.deafwakqkaeeeaa........kedee 566
                 LPdd+hf+++++++lf+kP  r++                                     + e++  e+ +e+fwa++++++ea+        ++d +
  CCD25214.1 596 LPDDYHFSTDKITRLFIKPTERMCLSnlrkrkskhtangnfttrshtelrtnnndgnnvaiNIENHGPEIaNEEFWAENYKRKEAEanqgidddADDAD 694
                 *********************9988788999**********************9998775533333335569*******99999888999976433333 PP

        Cnd2 567 apqGdyDanffadddglpfpqdlgggddddDddlefadarehfspaagaagatgltaelagleatagaeaklnetlafgstlvtqprrvrkeyvqYArv 665
                  ++G  D    + d+  pf++  +g+ d dDd  +  d +++f+       ++ +++ ++    + +++  ++++  f+++ +++    +  +++++rv
  CCD25214.1 695 GEEGVVDVVGASMDN--PFNNFGNGDGDGDDDMGNGIDFNQAFDD------DDDMDKRSHDS--ELSTR-DKERNAHFKDEDMKEDYLSKNNKINFSRV 782
                 347888865666566..5555566777777766558888888988......33344444322..22222.2456678999999999999999******* PP

        Cnd2 666 AKkvDvrrLKeelWklieeellesaaeeeesseeaakskekeekgalkFtevmnnLkkvypkqmmediStslaFiclLHLANEkgLklekqedledlkI 764
                 AK+vDvrrLK+++W+ i  +  e+++ ++e+s++  ++    e+ + kF++++++++  y+k+ ++diSts++FiclLHLANE+gL +e+ e+ledl++
  CCD25214.1 783 AKRVDVRRLKKNIWSSILVKIDEQKQAKKEDSSQ--DA--AIESYMFKFSDIIERVRIKYSKEVLKDISTSFCFICLLHLANEHGLDIEDYENLEDLTV 877
                 *****************98877654333333322..22..24679****************************************************98 PP

>> CNDH2_N  Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   3.8e-08   0.00034      34      97 ..      72     134 ..      55     152 .. 0.70
   2 ?   -3.3   0.3       1.2     1e+04      82      95 ..     262     275 ..     240     289 .. 0.47
   3 ?   -3.1   0.4         1   9.1e+03      91     106 ..     754     769 ..     739     782 .. 0.44

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 3.8e-08
     CNDH2_N  34 fdggkttlnFaeAaLliqgsavvYsrKveyLyslvyqtlellskkkkkkqkesesekgeded.ae 97 
                 +d  ++++nF +A+  + g +++Ys +v+ + s + + l  l++kk +++ +++++ g+++d + 
  CCD25214.1  72 RD-AENNINFQKASATLDGCVKIYSSRVDSVTSETGKLLSGLAQKKANNK-DRNKNAGNNSDpNG 134
                 33.4678*************************************999444.33344444444222 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.2
     CNDH2_N  82 kqkesesekgeded 95 
                  + es+++++ +e+
  CCD25214.1 262 VDGESADREEAEEE 275
                 22222222222222 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1
     CNDH2_N  91 gededaeaaeaeeede 106
                 +++++a++++++ +++
  CCD25214.1 754 DKERNAHFKDEDMKED 769
                 2222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1276  (0.0711696); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.33s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 5720.65
//
Query:       CCD25215.1  [L=261]
Description: hypothetical protein NDAI_0E03980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-05   24.9   0.0    2.7e-05   24.4   0.0    1.2  1  4HBT      Thioesterase superfamily


Domain annotation for each model (and alignments):
>> 4HBT  Thioesterase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.5e-09   2.7e-05       1      73 [.     145     216 ..     145     221 .. 0.95

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.5e-09
                 TSSB-HHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEEEEESS-BBTTCEEEEEEEEEEEESSEEEEEEEEEET CS
        4HBT   1 gGvvhgGvylallDeaagaalrslggrgilvvvvelsidflrpvrlgdeltvearvlrlgrtsavvevevrde 73 
                 +G vh G ++ +lDe++ ++ + l  + ++ v++ l+++f++ + +++   ++a+v++++++  v++ ++ + 
  CCD25215.1 145 HGAVHKGILALILDEGLCLCGFPLLPS-QRGVTAKLNLKFHADIPVDSSAILRAKVTEIKGRKCVIDGTLESV 216
                 799***********************9.*************************************99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1914.64
//
Query:       CCD25216.1  [L=223]
Description: hypothetical protein NDAI_0E03990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.9e-38  131.5   2.5      1e-37  130.4   2.5    1.4  1  Rox3      Rox3 mediator complex subunit


Domain annotation for each model (and alignments):
>> Rox3  Rox3 mediator complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4   2.5   5.7e-42     1e-37       1     161 [.      33     214 ..      33     222 .. 0.85

  Alignments for each domain:
  == domain 1  score: 130.4 bits;  conditional E-value: 5.7e-42
        Rox3   1 psrPnpsedLielYgLteiaaeVARtdpvtGeKinkLRKsYkgkikklglsGkfkavkkkeegkegellell...............klpdeeWqnqkv 84 
                 p+ Pnp +dLi++YgL++++++VAR +++tG K++kLRKsYk++i++l  sGkf++++++e+gk+ge++++l               + +d+eW ++ +
  CCD25216.1  33 PQIPNPLDDLISIYGLDDLSRQVARSNTETGIKAVKLRKSYKNQISDL--SGKFTTIPTRENGKGGEISHILfqnnpdmmnqihrntSKNDNEWIEHAR 129
                 689*********************************************..***********************************9999999***9999 PP

        Rox3  85 k........gkeiekglsadvlsklekalkmakGeipkkewdasvLgldkdsklksakaas......tkkaqsaratapstplaaaeaarp 161
                 +        +k+++++++++v s++e   k++++e++++++++++L++d d+++k++ +        +k++++++ ++ +tp +    ++ 
  CCD25216.1 130 NrdmdlfqsTKNMDWNVCNNVISQFE---KSYPSEFQQQQFNVDDLAFDLDGTGKNNGNIPgsvgnnKKRKNKSNGSSMATPNS---DVQQ 214
                 99999**999****************...**************************99887766555322222233333334432...2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1679.47
//
Query:       CCD25217.1  [L=131]
Description: hypothetical protein NDAI_0E04000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-46  155.2   1.8    7.9e-46  154.9   1.8    1.0  1  Ribosomal_L32e  Ribosomal protein L32
  ------ inclusion threshold ------
       0.17   12.2   0.1       0.37   11.1   0.0    1.6  2  SPACA7          Sperm acrosome-associated protein 7


Domain annotation for each model (and alignments):
>> Ribosomal_L32e  Ribosomal protein L32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.9   1.8   8.8e-50   7.9e-46       2     108 .]      16     122 ..      15     122 .. 0.99

  Alignments for each domain:
  == domain 1  score: 154.9 bits;  conditional E-value: 8.8e-50
                     -----TTTTT-TTS-SS------TT-TTTTT-TTS-----GGG---TTTTT--TTS-EEEEESSGGGGTT--TTTE..EEEE-TTS-HHHHHHHH CS
  Ribosomal_L32e   2 kkFirhqsdryvklkeswrkprGidnrvrrrfkgqilmpkiGYgspkktrgllpsGfkkvlVhnvkeLevllmenksyaaeiahsVsskkrkeiv 96 
                     kkF+rh+sdry++++e+wrk++Gid+ vrrrf+g+i+ p+iGYgs+kkt+ l psG+k++lV n+k+Le l+m++k+yaaeiah+Vs+k+r  i+
      CCD25217.1  16 KKFKRHHSDRYHRVSENWRKQKGIDSVVRRRFRGNIAEPTIGYGSNKKTKFLAPSGHKTFLVANIKDLETLMMHTKTYAAEIAHNVSAKNRVGIL 110
                     8********************************************************************************************** PP

                     HHHHHTT-EBSS CS
  Ribosomal_L32e  97 erAaelgikVtN 108
                     +rA+ lg+kVtN
      CCD25217.1 111 ARAKALGVKVTN 122
                     ***********9 PP

>> SPACA7  Sperm acrosome-associated protein 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.2e-05      0.37      55      94 ..       2      41 ..       1      53 [. 0.87
   2 ?   -1.3   0.0      0.29   2.6e+03      52      66 ..      69      83 ..      49     105 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.2e-05
      SPACA7 55 astlstkeihakidenyQkeasenYhellenlqfspgted 94
                as+l  ++i +k ++ ++ + s+ Yh ++en +   g++ 
  CCD25217.1  2 ASALPHPKIVKKHSKKFKRHHSDRYHRVSENWRKQKGIDS 41
                567777889999*******************999988876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.29
      SPACA7 52 sstastlstkeihak 66
                +s  +t   ++i++ 
  CCD25217.1 69 PSGHKTFLVANIKDL 83
                444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 956.09
//
Query:       CCD25218.1  [L=471]
Description: hypothetical protein NDAI_0E04010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-109  366.6  24.4   1.5e-109  366.4  24.4    1.0  1  Aa_trans  Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.4  24.4  8.5e-114  1.5e-109       2     409 .]       2     459 ..       1     459 [. 0.96

  Alignments for each domain:
  == domain 1  score: 366.4 bits;  conditional E-value: 8.5e-114
    Aa_trans   2 tssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktla.......sgkrnksYgdlgyrllGpkgkliidlailvq 93 
                  s+++ +vl+l+++++GaG+La+PyAfk++Gli+G+i++++++l+sl++l l++++ k+ +        ++r+ s++ l +++++p++++i+dlai+++
  CCD25218.1   2 ASTIRYGVLTLLHTACGAGILAMPYAFKPFGLIPGFIMIAICGLCSLWGLILQARVTKYSKtddnddtANDRSVSFFSL-TQIINPNLSVIFDLAIAIK 99 
                 58999*****************************************************99999999998999*******.******************* PP

    Aa_trans  94 lfGvgvsyliligdllpaifesffdt.......lllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetv 185
                 +fGvgvsy+i++gdl+p+i++ +  +       ll +n ++++++  i+ pL++++nls+L+y+S++a++s++y +++lv++++   ++e k+ + e +
  CCD25218.1 100 CFGVGVSYMIVVGDLMPQILSHLIPEshstsslLLSRNFHITIMMLCIVSPLCFMKNLSSLRYASMVAISSVVY-LCVLVVFHFLSPSQEIKDLKGELS 197
                 *********************99855567888777799999*******************************98.799999999888888888888888 PP

    Aa_trans 186 .kkasklkglflaigiivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhl 283
                  +   +  + + +++i+vFA+t+h+++++++ne+ d+s  ++++k+ +++++la+ lyi++G +GY+tFG+++ gni++ +p+s  + +i+++++v+ +
  CCD25218.1 198 yWLPNNEPSPLVTLPIFVFAYTCHHNMFSVINEQIDNSF-HNIKKLAIIAMSLAFSLYIIIGGSGYYTFGDNIVGNIITLYPQSV-SSTIGRMAIVFLV 294
                 87777888****************************888.99****************************************995.************* PP

    Aa_trans 284 ilsfplqlhplrqvvenllikk..........................................eavagasekeapkskllrlvirlllvvityliAls 340
                 +l+fplq+hp+r++++ ++  +                                          e++++ ++   p+ ++++++i++++++++yl+A+s
  CCD25218.1 295 TLAFPLQCHPARASIHHIILYItmkindakeikpsnpqqeplalsannqeramlirsersdtliEEESPLQPVTVPLEGKQFILITTSILICSYLLAIS 393
                 *******************999***************************************************************************** PP

    Aa_trans 341 vpslakvlslvGatsstplsfilPalfhlkliktekksleklvkkkildlicivlglllvfyglavlil 409
                 v+sla vl++vGat+st++sfilP++f++kli++e  ++e+l    i+ +++++ glll ++g+ ++i+
  CCD25218.1 394 VSSLAHVLAIVGATGSTSISFILPGVFGYKLIGSEMLTTEQLP---IKTRLFKYSGLLLSIWGVFIMIT 459
                 ******************************************6...5689***************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3394.65
//
Query:       CCD25219.1  [L=2786]
Description: hypothetical protein NDAI_0E04020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-56  191.9   0.0    4.2e-56  190.5   0.0    1.7  1  PI3_PI4_kinase   Phosphatidylinositol 3- and 4-kinase
    2.7e-26   92.5   2.1    1.7e-25   89.9   2.1    2.6  1  TAN              Telomere-length maintenance and DNA damage r
    2.9e-12   46.2   0.0    6.5e-12   45.0   0.0    1.7  1  FATC             FATC domain
  ------ inclusion threshold ------
       0.11   12.6   0.1        1.4    9.1   0.1    3.0  1  TPR_22           Tetratricopeptide repeat
        2.1    8.6   5.0        4.3    7.6   0.1    3.6  4  HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.5   0.0   1.2e-59   4.2e-56       9     249 ..    2466    2701 ..    2460    2702 .. 0.91

  Alignments for each domain:
  == domain 1  score: 190.5 bits;  conditional E-value: 1.2e-59
                      SSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHHHHHHCHCHCCHHHH CS
  PI3_PI4_kinase    9 gddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasveslrvaldkkklkkek 101 
                      +ddlrqd+ + qvf+ ++++l++++  ++ +l ++ty+viplg+++giie+v++s +++++l++ ++ +  p+++++  ++++  ++k  + +
      CCD25219.1 2466 NDDLRQDSIMEQVFQQVNKILRQNKGLRKMELGIRTYKVIPLGPRAGIIEFVPNSISLHEVLSNLHKDD--PIRFEQARKEMKAVQNK-SNDE 2555
                      79**************************************************************99664..33344433223322222.2344 PP

                      HCCHHHHHHTSSTTHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHCSSSS-.SSS CS
  PI3_PI4_kinase  102 klkfekrtalkpksgllqeFvkkspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewkllpfpqekv 194 
                      ++k++ + ++k k +l ++F  ++ ++ +w+++ +++ +  a  s++++ilg+gDRhl+Nil+d+ +g+ ihID G+++ d+++llp+p e+v
      CCD25219.1 2556 RIKVYLKLTEKIKPQLRNFFFNSFLEPSAWFRSKQRYSKGAAASSIVGHILGLGDRHLNNILLDRSTGEPIHIDLGISF-DQGRLLPIP-ELV 2646
                      556****************************************************************************.*********.*** PP

                      SSS-THHHHHHTSTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSC CS
  PI3_PI4_kinase  195 Pfrltrelvlaidpskdeglfresceealealrrdqnlltrllkkavkdglilwe 249 
                      Pfrltr++v+ ++ ++  glfr+sce+++++lr+d++ ++ +l++   d+l +w+
      CCD25219.1 2647 PFRLTRDMVDGLGVTGVDGLFRRSCEKVYSVLRKDSEKVMCVLNILKWDPLYSWV 2701
                      *****************************************************97 PP

>> TAN  Telomere-length maintenance and DNA damage repair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   2.1   4.7e-29   1.7e-25       1     151 []       8     160 ..       8     160 .. 0.92

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 4.7e-29
         TAN   1 lkealrlLssskikeRnkaldeLkhllsskrnktslsdlkdkawheifeaLfklvekEkeaylkkkk.....ssttksaaasRLskaasalRllvekav 94 
                 ++++l++Lss+k+keR++a+deL ++l+++++     d+++  ++++ ++L++l++ E+++y++  +     +++  s ++++++++++++Rl++ek++
  CCD25219.1   8 INNILNSLSSTKVKERTAAIDELVSILKQRPQ-----DIPTPLLASTSHTLIELLDLEHRKYCRYVSdvnesNASKISLSETKITNISYVVRLFIEKTC 101
                 789*****************************.....*************************99988776654444446667***************** PP

         TAN  95 sklkrktlkalldhitqllpgpdg..elleplaldyikaLrsllsvpphvehLskeqWe 151
                 +++k kt+++ll+ +++l+ +++g  e+++p+a +++ a  +l++++ ++ +++ + W+
  CCD25219.1 102 QRFKVKTMNQLLTILPELMINDEGsfEIIKPIAFQLSMATYALIQSDLFQLKFTSHRWS 160
                 *******************88855559*******************************5 PP

>> FATC  FATC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   1.8e-15   6.5e-12       2      31 ..    2756    2785 ..    2755    2786 .] 0.97

  Alignments for each domain:
  == domain 1  score: 45.0 bits;  conditional E-value: 1.8e-15
        FATC    2 LsveqQVdrLIkeATdpeNLaqmyiGWcPw 31  
                  Lsve++V++LI++ATdp  La +y GW+P+
  CCD25219.1 2756 LSVEATVQELIQQATDPAHLAVIYMGWSPF 2785
                  9****************************9 PP

>> TPR_22  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00039       1.4      22      89 ..    2088    2156 ..    2073    2157 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00039
      TPR_22   22 kLlkilskkeqeevsklvs.rerlklsandpdyqikinslaWevykdsevdelynqLvnivddDeeRrk 89  
                  +Ll++++ ++ + +s+lv+   +++l++  + y+  i+  a  + ++s   +++  L n +++  +R++
  CCD25219.1 2088 GLLSLITISKDQIISHLVTwSSQMRLETPSTIYKRYIDRWAVSLKENSARADIFMALANFLNEQVKRSQ 2156
                  689999999999****9984579****************************************999975 PP

>> HU-CCDC81_euk_2  CCDC81 eukaryotic HU domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1    0.0012       4.3      11      61 ..     195     245 ..     192     255 .. 0.85
   2 ?    0.8   0.0      0.15   5.5e+02      27      48 ..     405     426 ..     403     429 .. 0.90
   3 ?   -3.5   0.0       3.3   1.2e+04      39      72 ..    1696    1728 ..    1689    1728 .. 0.88
   4 ?   -3.6   0.1       3.7   1.3e+04      25      42 ..    2475    2492 ..    2473    2497 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0012
  HU-CCDC81_euk_2  11 aaaaglsrdvVescvqetfqalgdllrngknvelefkgiGvLsirnrkvkm 61 
                      ++++     ++ +  +++++ l+ + + + n +l f +i +L+++ + +k 
       CCD25219.1 195 SLDCMALQTDCMDIYRALLSYLEACTKENGNTRLIFLCINKLIVKTHCIKI 245
                      555556666789999*****************************9988875 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.15
  HU-CCDC81_euk_2  27 etfqalgdllrngknvelefkg 48 
                      ++f++++++l n + ++l++ g
       CCD25219.1 405 DIFSFIERCLDNTQPINLQIFG 426
                      89****************9865 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.3
  HU-CCDC81_euk_2   39 gknvelefkgiGvLsirnrkvkmkFyesflesle 72  
                       +k+v+++f +i +L+ + ++++  +++++++sl+
       CCD25219.1 1696 EKKVKVVF-NILRLIRCASRLSIDYFTHLYNSLD 1728
                       68899999.79999999*****999999999875 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 3.7
  HU-CCDC81_euk_2   25 vqetfqalgdllrngknv 42  
                       ++++fq++++ lr++k +
       CCD25219.1 2475 MEQVFQQVNKILRQNKGL 2492
                       7899*********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      288  (0.0160634); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.08u 0.28s 00:00:01.36 Elapsed: 00:00:00.47
# Mc/sec: 17993.73
//
Query:       CCD25220.1  [L=137]
Description: hypothetical protein NDAI_0E04030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-33  115.7   0.0    1.5e-33  115.4   0.0    1.0  1  Ribosomal_L14  Ribosomal protein L14p/L23e


Domain annotation for each model (and alignments):
>> Ribosomal_L14  Ribosomal protein L14p/L23e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.0   8.6e-38   1.5e-33       4     121 ..      19     136 ..      17     137 .] 0.93

  Alignments for each domain:
  == domain 1  score: 115.4 bits;  conditional E-value: 8.6e-38
                    SS-EEE--SSSSBSEEEEEEETT-.--....-EE-SSSEEEEEESSS-T...TTSSCEEEEEEEE-SS-EE-TTS-EEEESS-EEEEB-TTS-BSS CS
  Ribosomal_L14   4 lktrlkvaDNsgakevecikvlggkkr....kaasvGdiivvsvkkakpkgkvkkgdvvkavvvrtkkevrrkdGsvirfddnaaVllnkkgeplG 95 
                    +++++++aDN+ga+++++i+v g+++r    +aas+Gd+++++vkk+kp   + +++v+ a+vvr++k++rrkdG+++ f+dna V+ n kge++G
     CCD25220.1  19 TGAIMNCADNTGARNLYIIAVKGSGSRlsrlPAASLGDMVMATVKKGKP---ELRKKVMPAIVVRQSKSWRRKDGVYLYFEDNAGVIANPKGEMKG 111
                    5789******************998444556******************...899***************************************** PP

                    -.B-SBEEHHHHHH.-HHHHHTBSBE CS
  Ribosomal_L14  96 trifgpvarelrekkflkivslApev 121
                    + i+gpv +e+++  +++++s +  v
     CCD25220.1 112 SAITGPVGKECADL-WPRVASNSGVV 136
                    *************9.****9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       247  (0.0137766); expected 358.6 (0.02)
Passed bias filter:                      233  (0.0129957); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1059.61
//
Query:       CCD25221.1  [L=783]
Description: hypothetical protein NDAI_0E04040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      4e-34  115.0   5.3    5.2e-08   32.4   0.0    8.1  7  TPR_1       Tetratricopeptide repeat
    2.3e-32  108.5   3.5    2.7e-06   27.1   0.1    8.3  8  TPR_2       Tetratricopeptide repeat
    8.9e-28   94.2   8.6    0.00021   21.2   0.0    8.8  8  TPR_8       Tetratricopeptide repeat
    1.7e-20   73.0  27.5      3e-14   53.0   4.1    4.5  5  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
    3.5e-16   59.5   0.0    1.1e-05   26.0   0.0    4.4  4  TPR_16      Tetratricopeptide repeat
    1.8e-13   49.9   0.1      0.046   13.4   0.0    6.4  6  TPR_11      TPR repeat
    5.8e-12   45.7   0.1       0.08   13.2   0.0    5.6  5  TPR_12      Tetratricopeptide repeat
    3.7e-11   42.9   0.0       0.17   12.8   0.0    6.1  6  TPR_14      Tetratricopeptide repeat
    2.5e-09   36.5   0.0          2    8.6   0.0    6.7  6  TPR_7       Tetratricopeptide repeat
    7.3e-09   36.0   0.0      0.092   13.3   0.0    4.7  4  TPR_19      Tetratricopeptide repeat
      5e-08   33.1   5.1        3.5    8.5   0.0    6.3  7  TPR_6       Tetratricopeptide repeat
    3.9e-07   30.0   5.1        1.9    9.0   0.0    7.3  8  TPR_17      Tetratricopeptide repeat
    4.5e-06   26.1   0.0      0.021   14.1   0.0    3.2  3  TPR_15      Tetratricopeptide repeat
    2.5e-05   24.3   0.0     0.0016   18.5   0.0    2.9  3  TPR_9       Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00075      0.96       5      33 ..     501     529 ..     497     530 .. 0.90
   2 !   32.4   0.0   4.1e-11   5.2e-08       2      34 .]     566     598 ..     565     598 .. 0.96
   3 !    6.7   0.0    0.0054       6.9       4      32 ..     602     630 ..     600     632 .. 0.86
   4 !   31.8   0.1   6.3e-11   8.1e-08       2      34 .]     634     666 ..     633     666 .. 0.97
   5 !    7.3   0.0    0.0035       4.5       8      33 ..     674     699 ..     670     700 .. 0.88
   6 !   12.6   0.2   7.1e-05     0.091       4      33 ..     704     733 ..     701     734 .. 0.89
   7 !    8.9   0.0    0.0011       1.4       2      33 ..     736     767 ..     735     767 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00075
                 HHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   5 ynlGnayfklgkydeAleyyekALelnPn 33 
                  +lG+++f+  +y+  l+y+ek  +l+P+
  CCD25221.1 501 SQLGMLHFEIVNYEMSLKYFEKLRKLQPT 529
                 68********************9999886 PP

  == domain 2  score: 32.4 bits;  conditional E-value: 4.1e-11
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 ++++ lGn++  +++++eA++++ek+ +l+P++
  CCD25221.1 566 QTWCCLGNLFSLQKDHKEAIKAFEKVTKLDPTF 598
                 79*****************************96 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0054
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnP 32 
                 +   ++ y++   +d A  y++kA++ + 
  CCD25221.1 602 YTLQAHEYLSDDSFDLAKNYFRKAVSTDS 630
                 77789999****************98776 PP

  == domain 4  score: 31.8 bits;  conditional E-value: 6.3e-11
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 +a+y++G++ +klg+++ Al y+ekA ++nP+n
  CCD25221.1 634 NAYYGIGMCSMKLGEFEHALLYFEKARSINPSN 666
                 79*****************************98 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.0035
                 HHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPn 33 
                 G+a+ kl  +++Al yye A +++P+
  CCD25221.1 674 GVAFEKLSYPEKALSYYELACQVQPS 699
                 8888888889*************997 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 7.1e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPn 33 
                  + ++++++++ +y  Ale++e+  +l P+
  CCD25221.1 704 KFKRAHLLYSMANYPLALECFEELTKLAPE 733
                 5779******************99988885 PP

  == domain 7  score: 8.9 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPn 33 
                  +++ lG++y  +g+ ++A++ y  A  l+P+
  CCD25221.1 736 TVHFILGQLYNIMGRKKDAVKEYTIAMNLDPK 767
                 57899******************999999995 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.1   6.6e+03       5      23 ..     137     156 ..     135     159 .. 0.73
   2 !   10.3   0.0   0.00048      0.61       5      33 ..     501     529 ..     497     530 .. 0.91
   3 !   24.9   0.0   1.1e-08   1.4e-05       2      33 ..     566     597 ..     565     598 .. 0.95
   4 ?    5.5   0.0     0.017        21       4      31 ..     602     629 ..     600     632 .. 0.82
   5 !   27.1   0.1   2.1e-09   2.7e-06       2      34 .]     634     666 ..     633     666 .. 0.96
   6 !    7.7   0.0    0.0033       4.2       7      33 ..     673     699 ..     668     700 .. 0.89
   7 !   15.4   0.3   1.1e-05     0.015       3      33 ..     703     733 ..     701     734 .. 0.93
   8 !    9.2   0.0    0.0011       1.4       1      33 [.     735     767 ..     735     767 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.1
       TPR_2   5 ynlGlayyklgdy.eeAlea 23 
                 y  G++++kl +  +eA++ 
  CCD25221.1 137 YLYGKCALKLSRKiKEAIDS 156
                 66778888877777898875 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00048
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPn 33 
                  +lG+++++  +ye  l++fek  +l P+
  CCD25221.1 501 SQLGMLHFEIVNYEMSLKYFEKLRKLQPT 529
                 67999999999*****************7 PP

  == domain 3  score: 24.9 bits;  conditional E-value: 1.1e-08
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 + +++lG++   ++d++eA++afek+ +ldP+
  CCD25221.1 566 QTWCCLGNLFSLQKDHKEAIKAFEKVTKLDPT 597
                 67*****************************8 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.017
       TPR_2   4 lynlGlayyklgdyeeAleafekAleld 31 
                 +  ++  y+  + ++ A+++f+kA++ d
  CCD25221.1 602 YTLQAHEYLSDDSFDLAKNYFRKAVSTD 629
                 5567888999999***********9866 PP

  == domain 5  score: 27.1 bits;  conditional E-value: 2.1e-09
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                  a+y +G++ +klg++e Al +fekA +++P n
  CCD25221.1 634 NAYYGIGMCSMKLGEFEHALLYFEKARSINPSN 666
                 59*****************************87 PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.0033
       TPR_2   7 lGlayyklgdyeeAleafekAleldPn 33 
                  G a +kl  +e+Al ++e A +  P 
  CCD25221.1 673 CGVAFEKLSYPEKALSYYELACQVQPS 699
                 689999999*************99985 PP

  == domain 7  score: 15.4 bits;  conditional E-value: 1.1e-05
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 a + ++ ++y + +y  Ale+fe+  +l+P+
  CCD25221.1 703 AKFKRAHLLYSMANYPLALECFEELTKLAPE 733
                 6689*************************96 PP

  == domain 8  score: 9.2 bits;  conditional E-value: 0.0011
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a +++ lG++y  +g+ ++A++ +  A  ldP+
  CCD25221.1 735 ATVHFILGQLYNIMGRKKDAVKEYTIAMNLDPK 767
                 5689***************************96 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.26   3.3e+02       5      20 ..     189     204 ..     189     207 .. 0.90
   2 !    7.3   0.0    0.0049       6.3       6      32 ..     502     528 ..     500     530 .. 0.91
   3 !   21.2   0.0   1.7e-07   0.00021       2      33 ..     566     597 ..     565     598 .. 0.92
   4 !   12.9   0.1   7.6e-05     0.098       4      33 ..     602     631 ..     600     632 .. 0.91
   5 !   20.1   0.1   3.7e-07   0.00047       2      34 .]     634     666 ..     633     666 .. 0.95
   6 ?    6.0   0.0     0.012        16       9      33 ..     675     699 ..     674     700 .. 0.87
   7 !    8.5   0.1    0.0021       2.6       5      33 ..     705     733 ..     703     734 .. 0.93
   8 !   12.0   0.0   0.00015       0.2       2      33 ..     736     767 ..     735     767 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.26
                 HHHHHHHHHTT-HHHH CS
       TPR_8   5 ynlgsiylklgdyeeA 20 
                 ++++++y+kl +++e+
  CCD25221.1 189 CLIAKLYSKLDRKHES 204
                 689*********9996 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0049
                 HHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   6 nlgsiylklgdyeeAkeyyekaleldp 32 
                 +lg+++++  +ye++ +y+ek  +l+p
  CCD25221.1 502 QLGMLHFEIVNYEMSLKYFEKLRKLQP 528
                 69*******************988887 PP

  == domain 3  score: 21.2 bits;  conditional E-value: 1.7e-07
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 + ++ lg++ + ++d++eA++++ek+++ldp+
  CCD25221.1 566 QTWCCLGNLFSLQKDHKEAIKAFEKVTKLDPT 597
                 578889************************96 PP

  == domain 4  score: 12.9 bits;  conditional E-value: 7.6e-05
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 y + ++ yl+   ++ Ak y++ka++ d +
  CCD25221.1 602 YTLQAHEYLSDDSFDLAKNYFRKAVSTDSQ 631
                 8899*********************99876 PP

  == domain 5  score: 20.1 bits;  conditional E-value: 3.7e-07
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                  ayy +g++ +klg++e A  y+eka +++p+n
  CCD25221.1 634 NAYYGIGMCSMKLGEFEHALLYFEKARSINPSN 666
                 69****************************986 PP

  == domain 6  score: 6.0 bits;  conditional E-value: 0.012
                 HHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyyekaleldpd 33 
                  + +kl   e+A +yye a++ +p+
  CCD25221.1 675 VAFEKLSYPEKALSYYELACQVQPS 699
                 577899999***********99996 PP

  == domain 7  score: 8.5 bits;  conditional E-value: 0.0021
                 HHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekaleldpd 33 
                 ++ ++++ ++ +y  A e++e+ ++l+p+
  CCD25221.1 705 FKRAHLLYSMANYPLALECFEELTKLAPE 733
                 789************************97 PP

  == domain 8  score: 12.0 bits;  conditional E-value: 0.00015
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                  +++ lg++y  +g+++ A++ y  a  ldp+
  CCD25221.1 736 TVHFILGQLYNIMGRKKDAVKEYTIAMNLDPK 767
                 67899******************999999996 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   4.1   2.3e-17     3e-14       1      80 [.      73     158 ..      73     160 .. 0.90
   2 ?   -2.6   0.0       5.2   6.6e+03      24      47 ..     459     485 ..     448     494 .. 0.63
   3 ?   -2.0   0.1       3.5   4.5e+03       5      33 ..     513     541 ..     512     547 .. 0.80
   4 !   21.8   1.5   1.3e-07   0.00016       2      81 ..     578     658 ..     577     659 .. 0.96
   5 !   12.9   1.3   7.8e-05     0.099       7      76 ..     685     755 ..     682     758 .. 0.94

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 2.3e-17
                 HTT-HHHHHHHHHHHH........HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHT.T-HHHHHHHH- CS
      ANAPC3   1 dqnnyknAiflaerll.......aaetespedayllAlclylngqykrAyellrkaklnskslgcrylfAqcllkL.kkyeeAiaaLe 80 
                 +q ny++A+f+ae+l+       +++ +  +++yl+ l+l+ln++y++ +++ +++  +++++g++yl+++c+lkL  k++eAi+ L 
  CCD25221.1  73 EQLNYDTAEFYAELLFaqcsnleNSNIHKIKSIYLYTLALFLNQNYHTSMHVSKDY--KHSDIGIAYLYGKCALKLsRKIKEAIDSLV 158
                 689*************6666554477888888************************..99****************99*******985 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.2
                 HH.HHHHHHHHHHTT-HH..HHHHHHH CS
      ANAPC3  24 ed.ayllAlclylngqyk..rAyellr 47 
                 ++ +y +Al l  ++qy+  +A++l++
  CCD25221.1 459 NNlLYSFALILKTSSQYNsyKAIRLIN 485
                 442555788888888875114665555 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.5
                 HHHHHHHHHHHH.HHH--HHHHHHHHHHH CS
      ANAPC3   5 yknAiflaerllaaetespedayllAlcl 33 
                 y+  + ++e+l + ++ +++d+  ++  l
  CCD25221.1 513 YEMSLKYFEKLRKLQPTRLKDLETYSTLL 541
                 67778899999999999999998887665 PP

  == domain 4  score: 21.8 bits;  conditional E-value: 1.3e-07
                 TT-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   2 qnnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 q+++k+Ai  +e++ + ++   +   l A  ++++  ++ A +++rka  ++s++ ++ y ++ c+ kL+++e A+  +ek
  CCD25221.1 578 QKDHKEAIKAFEKVTKLDPTFTYGYTLQAHEYLSDDSFDLAKNYFRKAvSTDSQHYNAYYGIGMCSMKLGEFEHALLYFEK 658
                 789************************************************************************988887 PP

  == domain 5  score: 12.9 bits;  conditional E-value: 7.8e-05
                 HHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHH CS
      ANAPC3   7 nAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAi 76 
                 +A+ ++e++++ ++ s+ + +  A  ly++ +y  A+e ++++ kl+++   ++++++q +  +++ ++A+
  CCD25221.1 685 KALSYYELACQVQPSSSLAKFKRAHLLYSMANYPLALECFEELtKLAPEEATVHFILGQLYNIMGRKKDAV 755
                 7999******9999999999999**************************************9999999997 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.4   4.4e+03      37      57 ..     136     158 ..     135     160 .. 0.74
   2 ?    5.8   0.0     0.017        22      40      65 ..     571     596 ..     553     597 .. 0.80
   3 !   21.8   0.0   1.7e-07   0.00022       3      66 ..     605     665 ..     603     667 .. 0.94
   4 !   26.0   0.0   8.3e-09   1.1e-05       2      57 ..     706     758 ..     705     767 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.4
      TPR_16  37 llllgdaalrq.grlaeAa.aly 57 
                 ++l+g +al++    +eA+  l+
  CCD25221.1 136 AYLYGKCALKLsRKIKEAIdSLV 158
                 699******88566777776555 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.017
      TPR_16  40 lgdaalrqgrlaeAaalyraalraap 65 
                 lg+++  q++++eA+ ++++  + +p
  CCD25221.1 571 LGNLFSLQKDHKEAIKAFEKVTKLDP 596
                 899999999*****999998777766 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 1.7e-07
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraapd 66 
                 +a+++l    +d A ++++ a+  d   ++++ A+++ g +  ++g+++ A+ ++++a    p+
  CCD25221.1 605 QAHEYLSDDSFDLAKNYFRKAVSTD---SQHYNAYYGIGMCSMKLGEFEHALLYFEKARSINPS 665
                 89***********************...*****************************9877765 PP

  == domain 4  score: 26.0 bits;  conditional E-value: 8.3e-09
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaaly 57 
                 ++a++++   +y+ A++ +e+++k++   P+ a  ++ lg+++   gr ++A+  y
  CCD25221.1 706 KRAHLLYSMANYPLALECFEELTKLA---PEEATVHFILGQLYNIMGRKKDAVKEY 758
                 79************************...***********************9555 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00015       0.2       1      27 [.     572     598 ..     572     604 .. 0.89
   2 ?    1.5   0.1      0.19   2.5e+02      11      35 ..     616     640 ..     606     641 .. 0.80
   3 !   12.5   0.0   6.8e-05     0.087       6      41 ..     645     680 ..     644     681 .. 0.95
   4 ?    1.3   0.0      0.21   2.8e+02      11      40 ..     684     713 ..     684     715 .. 0.89
   5 !   13.4   0.0   3.6e-05     0.046       3      38 ..     710     745 ..     708     749 .. 0.91
   6 ?    4.9   0.0     0.016        20       1      26 [.     742     767 ..     742     768 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdn 27 
                 G+++  q + +eAi+a++k  kldP++
  CCD25221.1 572 GNLFSLQKDHKEAIKAFEKVTKLDPTF 598
                 88888999*****************87 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.19
      TPR_11  11 eeAieaYkkAlkldPdnaeayynLG 35 
                 + A + ++kA+  d++  +ayy++G
  CCD25221.1 616 DLAKNYFRKAVSTDSQHYNAYYGIG 640
                 55666689**************999 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 6.8e-05
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 ++G++e A+  ++kA  ++P+n+ + +++G+a+ k+
  CCD25221.1 645 KLGEFEHALLYFEKARSINPSNVILICCCGVAFEKL 680
                 79*******************************997 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.21
      TPR_11  11 eeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 e+A+  Y+ A++  P++  a +++++++y 
  CCD25221.1 684 EKALSYYELACQVQPSSSLAKFKRAHLLYS 713
                 7899999**********9999999999986 PP

  == domain 5  score: 13.4 bits;  conditional E-value: 3.6e-05
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                 ++y+  +y+ A+e++++  kl P+ a++++ LG++y
  CCD25221.1 710 LLYSMANYPLALECFEELTKLAPEEATVHFILGQLY 745
                 6788889***************************99 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.016
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPd 26 
                 G++y   G+ ++A+++Y  A +ldP+
  CCD25221.1 742 GQLYNIMGRKKDAVKEYTIAMNLDPK 767
                 889999*******************6 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.011        15       7      51 ..     501     540 ..     497     546 .. 0.75
   2 !    9.4   0.0   0.00096       1.2      51      74 ..     571     594 ..     564     597 .. 0.75
   3 !    8.8   0.1    0.0016         2      46      74 ..     634     662 ..     609     665 .. 0.65
   4 ?   -0.7   0.0       1.4   1.8e+03      56      74 ..     678     696 ..     673     699 .. 0.68
   5 !   13.2   0.0   6.3e-05      0.08       8      74 ..     706     764 ..     700     767 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
      TPR_12   7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnL 51 
                 ++l++++++  +y+ +l+++ek + ++     p+++  ++t+ +L
  CCD25221.1 501 SQLGMLHFEIVNYEMSLKYFEKLRKLQ-----PTRLKDLETYSTL 540
                 579999999999**********99999.....4444444444444 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00096
      TPR_12  51 LgrlyralgryeeAlelleealai 74 
                 Lg l++++++++eA++++e+++++
  CCD25221.1 571 LGNLFSLQKDHKEAIKAFEKVTKL 594
                 677888888888888888887766 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0016
      TPR_12  46 ttlrnLgrlyralgryeeAlelleealai 74 
                 ++++++g++  +lg++e Al ++e+a  i
  CCD25221.1 634 NAYYGIGMCSMKLGEFEHALLYFEKARSI 662
                 45666666644666666666666666554 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 1.4
      TPR_12  56 ralgryeeAlelleealai 74 
                 ++l  +e+Al+++e a ++
  CCD25221.1 678 EKLSYPEKALSYYELACQV 696
                 5555578899999888765 PP

  == domain 5  score: 13.2 bits;  conditional E-value: 6.3e-05
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74 
                 ++a++l+ + +y  Ale++e+   +a     p+   +at+ + Lg+ly  +gr ++A++ ++ a+++
  CCD25221.1 706 KRAHLLYSMANYPLALECFEELTKLA-----PE---EATVHFILGQLYNIMGRKKDAVKEYTIAMNL 764
                 57999*****************8888.....65...8********************9988766665 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       9.5   1.2e+04      16      34 ..     512     530 ..     497     536 .. 0.73
   2 !   12.8   0.0   0.00013      0.17       2      35 ..     566     599 ..     565     612 .. 0.87
   3 ?    3.0   0.0      0.18   2.3e+02       8      34 ..     606     632 ..     601     642 .. 0.81
   4 ?    5.0   0.0     0.043        55      12      35 ..     644     667 ..     634     672 .. 0.84
   5 ?    4.8   0.0     0.047        61      10      42 ..     676     708 ..     669     710 .. 0.86
   6 !   11.6   0.0   0.00032      0.41       5      44 .]     705     744 ..     702     744 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 9.5
      TPR_14  16 dpdeAiallrralalaPdd 34 
                 +++ ++++++++ +l+P+ 
  CCD25221.1 512 NYEMSLKYFEKLRKLQPTR 530
                 6777899999999999975 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 0.00013
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdda 35 
                 + + +l+ ++  + d++eAi++++++ +l+P++ 
  CCD25221.1 566 QTWCCLGNLFSLQKDHKEAIKAFEKVTKLDPTFT 599
                 67889**************************874 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.18
      TPR_14   8 aeallalGdpdeAiallrralalaPdd 34 
                 a+ +l  + +d A +++r+a++++ ++
  CCD25221.1 606 AHEYLSDDSFDLAKNYFRKAVSTDSQH 632
                 677888899************998665 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.043
      TPR_14  12 lalGdpdeAiallrralalaPdda 35 
                 + lG+++ A+ ++++a + +P++ 
  CCD25221.1 644 MKLGEFEHALLYFEKARSINPSNV 667
                 789******************985 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.047
      TPR_14  10 allalGdpdeAiallrralalaPddaeawllla 42 
                 a++ l  p++A+ +++ a++ +P++  a +  a
  CCD25221.1 676 AFEKLSYPEKALSYYELACQVQPSSSLAKFKRA 708
                 7788899*****************999987665 PP

  == domain 6  score: 11.6 bits;  conditional E-value: 0.00032
      TPR_14   5 lalaeallalGdpdeAiallrralalaPddaeawlllaql 44 
                  ++a++l+   ++  A+++++++ +laP++a++++ l+ql
  CCD25221.1 705 FKRAHLLYSMANYPLALECFEELTKLAPEEATVHFILGQL 744
                 57999********************************997 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.21   2.6e+02       4      24 ..     502     522 ..     499     534 .. 0.89
   2 !    8.6   0.0    0.0016         2       5      32 ..     571     596 ..     567     598 .. 0.89
   3 ?    4.8   0.0     0.026        34       1      24 [.     635     658 ..     635     665 .. 0.87
   4 !    7.7   0.0    0.0031       3.9       6      24 ..     674     692 ..     673     702 .. 0.92
   5 ?    2.3   0.0      0.17   2.1e+02       7      35 ..     709     735 ..     706     736 .. 0.79
   6 ?    0.7   0.0      0.53   6.8e+02       5      33 ..     741     767 ..     737     769 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.21
       TPR_7   4 nLarlysrlGdyeeAielyeq 24 
                 +L+ l+++  +ye  ++++e+
  CCD25221.1 502 QLGMLHFEIVNYEMSLKYFEK 522
                 7999999999**********9 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0016
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkdp 32 
                 L++l+s + d++eAi+ +e+  ++  dp
  CCD25221.1 571 LGNLFSLQKDHKEAIKAFEK--VTKLDP 596
                 9*******************..988887 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.026
       TPR_7   1 aLlnLarlysrlGdyeeAielyeq 24 
                 a++ ++ +  +lG++e A+ ++e+
  CCD25221.1 635 AYYGIGMCSMKLGEFEHALLYFEK 658
                 56777888899************9 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0031
       TPR_7   6 arlysrlGdyeeAielyeq 24 
                 ++++++l + e+A+++ye 
  CCD25221.1 674 GVAFEKLSYPEKALSYYEL 692
                 899**************97 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.17
       TPR_7   7 rlysrlGdyeeAielyeqsLaltkdpeda 35 
                 +l  ++ +y  A+e++e+   +  +pe+a
  CCD25221.1 709 HLLYSMANYPLALECFEE--LTKLAPEEA 735
                 56667899**********..777777665 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.53
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltkdpe 33 
                 L++ly  +G+ ++A++ y+   a+  dp 
  CCD25221.1 741 LGQLYNIMGRKKDAVKEYTI--AMNLDPK 767
                 88888889***********9..8888875 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.34   4.4e+02      24      50 ..     132     159 ..     118     170 .. 0.82
   2 ?    4.4   0.0     0.041        52       4      24 ..     578     598 ..     573     607 .. 0.84
   3 !   13.3   0.0   7.2e-05     0.092       4      51 ..     612     659 ..     609     667 .. 0.86
   4 !   10.2   0.1   0.00066      0.85       8      67 ..     684     743 ..     683     744 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.34
      TPR_19  24 naearllLAeallal.gqldeAealLda 50 
                 +  +++l+ ++ l+l   ++eA++ L +
  CCD25221.1 132 DIGIAYLYGKCALKLsRKIKEAIDSLVR 159
                 778999*********8889999988865 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.041
      TPR_19   4 egdyaeAlalleqalqedpkn 24 
                 ++d+ eA++++e++ + dp  
  CCD25221.1 578 QKDHKEAIKAFEKVTKLDPTF 598
                 789999999999999999875 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 7.2e-05
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdal 51 
                 +  ++ A +++++a + d ++ +a ++   + ++lg+++ A    +++
  CCD25221.1 612 DDSFDLAKNYFRKAVSTDSQHYNAYYGIGMCSMKLGEFEHALLYFEKA 659
                 567899*********************************998666655 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00066
      TPR_19   8 aeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddaryasLlAk 67 
                 + Al+++e a q  p ++ a+   A +l+++ ++  A ++ ++l + +p +a ++  l++
  CCD25221.1 684 EKALSYYELACQVQPSSSLAKFKRAHLLYSMANYPLALECFEELTKLAPEEATVHFILGQ 743
                 689***********************************************9999866655 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       6.5   8.3e+03       4      23 ..     137     157 ..     136     161 .. 0.74
   2 ?    4.7   0.0     0.043        55       5      31 ..     502     528 ..     500     529 .. 0.92
   3 !    8.5   0.0    0.0027       3.5       7      31 ..     572     596 ..     571     597 .. 0.84
   4 !    8.2   0.0    0.0033       4.2       2      32 ..     635     665 ..     634     666 .. 0.93
   5 ?   -2.7   0.0       9.5   1.2e+04      17      26 ..     684     693 ..     683     700 .. 0.60
   6 !    7.6   0.1    0.0052       6.7       2      32 ..     703     733 ..     702     734 .. 0.89
   7 ?   -1.5   0.0       4.1   5.2e+03       4      26 ..     739     761 ..     737     767 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 6.5
                 HHHHHHHHHH.HHHHHHHHHH CS
       TPR_6   4 yklalsyrkl.gdtdkAleal 23 
                 y+ +++ +kl  +  +A++ l
  CCD25221.1 137 YLYGKCALKLsRKIKEAIDSL 157
                 888999999636888888876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.043
                 HHHHHHHH.HHHHHHHHHHHHHHHHH-T CS
       TPR_6   5 klalsyrk.lgdtdkAlealerlikeYP 31 
                 +l++++++   +++ +l+++e+l+k  P
  CCD25221.1 502 QLGMLHFEiV-NYEMSLKYFEKLRKLQP 528
                 699*****88.*************9988 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0027
                 HHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   7 alsyrklgdtdkAlealerlikeYP 31 
                 + ++  ++d+ +A++a+e++ k  P
  CCD25221.1 572 GNLFSLQKDHKEAIKAFEKVTKLDP 596
                 56666799************99887 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.0033
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 A+y ++++  klg+ + Al ++e+ ++  P 
  CCD25221.1 635 AYYGIGMCSMKLGEFEHALLYFEKARSINPS 665
                 9**********99***********9998885 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 9.5
                 HHHHHHHHHH CS
       TPR_6  17 dkAlealerl 26 
                 +kAl ++e  
  CCD25221.1 684 EKALSYYELA 693
                 5677777655 PP

  == domain 6  score: 7.6 bits;  conditional E-value: 0.0052
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlikeYPd 32 
                 A +k+a +++++ ++  Ale +e+l k  P+
  CCD25221.1 703 AKFKRAHLLYSMANYPLALECFEELTKLAPE 733
                 56999*9999977*************99885 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 4.1
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   4 yklalsyrklgdtdkAlealerl 26 
                 + l+++y  +g++ +A++ +   
  CCD25221.1 739 FILGQLYNIMGRKKDAVKEYTIA 761
                 66777666478999999988765 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1         5   6.4e+03       5      19 ..     211     225 ..     211     225 .. 0.89
   2 !    8.2   0.0    0.0027       3.5       5      34 .]     557     586 ..     555     586 .. 0.88
   3 ?    1.4   0.0      0.41   5.2e+02       2      24 ..     588     610 ..     587     619 .. 0.80
   4 ?    3.3   0.0       0.1   1.3e+02       1      29 [.     621     649 ..     621     653 .. 0.90
   5 ?   -2.4   0.0       6.7   8.6e+03       2      17 ..     656     671 ..     655     681 .. 0.75
   6 ?    0.0   0.0       1.1   1.5e+03       9      21 ..     682     694 ..     676     695 .. 0.87
   7 ?    1.9   0.1      0.29   3.7e+02       2      32 ..     690     720 ..     689     722 .. 0.84
   8 !    9.0   0.0    0.0015       1.9       1      33 [.     723     755 ..     723     756 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 5
      TPR_17   5 aleldPnnadaynnL 19 
                 al +dP  +++y++L
  CCD25221.1 211 ALNQDPYLWESYTEL 225
                 7899********987 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0027
      TPR_17   5 aleldPnnadaynnLAelllknGdlmtArq 34 
                  l+  +n +  ++ L++l++ ++d+++A++
  CCD25221.1 557 LLKEFKNEPQTWCCLGNLFSLQKDHKEAIK 586
                 5777789999******************85 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.41
      TPR_17   2 ylkaleldPnnadaynnLAelll 24 
                 ++k+ +ldP+  + y++ A  +l
  CCD25221.1 588 FEKVTKLDPTFTYGYTLQAHEYL 610
                 89*********999998887555 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.1
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdl 29 
                 +++ka+  d  + +ay+  + +  k+G++
  CCD25221.1 621 YFRKAVSTDSQHYNAYYGIGMCSMKLGEF 649
                 589******************99999986 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 6.7
      TPR_17   2 ylkaleldPnnadayn 17 
                 ++ka  ++P+n+ + +
  CCD25221.1 656 FEKARSINPSNVILIC 671
                 67777899**997655 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 1.1
      TPR_17   9 dPnnadaynnLAe 21 
                 +P  a +y++LA 
  CCD25221.1 682 YPEKALSYYELAC 694
                 6999*******95 PP

  == domain 7  score: 1.9 bits;  conditional E-value: 0.29
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 y+ a +  P+++ a + +A ll++  ++  A
  CCD25221.1 690 YELACQVQPSSSLAKFKRAHLLYSMANYPLA 720
                 78888999*************9988777666 PP

  == domain 8  score: 9.0 bits;  conditional E-value: 0.0015
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 ++++  +l P  a +++ L++l+   G++++A+
  CCD25221.1 723 CFEELTKLAPEEATVHFILGQLYNIMGRKKDAV 755
                 799999***********************9997 PP

>> TPR_15  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.6e-05     0.021     117     248 ..     536     667 ..     511     689 .. 0.74
   2 ?    0.5   0.0      0.22   2.9e+02     223     255 ..     676     708 ..     669     716 .. 0.80
   3 !    7.4   0.0    0.0017       2.2     133     184 ..     724     773 ..     706     776 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
      TPR_15 117 lellerakdydriaellksleeeeaaeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselraallWlliDlgrraeLrellkawkaraesdas 215
                  ++    +  d+i+  + s e +++++++++ +  +++l + + ++++A+++++++ +l+p+   +  ++     ++ ++++   +   ++++ ++d++
  CCD25221.1 536 TYSTLLWHLHDKIKLTVLSNELLKEFKNEPQTWCCLGNLFSLQKDHKEAIKAFEKVTKLDPT---FTYGYTLQAHEYLSDDSFDLAKNYFRKAVSTDSQ 631
                 333344466677888888888999*************************************9...6666666666776666633333334555577777 PP

      TPR_15 216 Lwgpl...aaAlllLgrpkkALeylrkqakenrkdp 248
                  ++++   +  +++Lg+ + AL y++k ++ n++++
  CCD25221.1 632 HYNAYygiGMCSMKLGEFEHALLYFEKARSINPSNV 667
                 777764447889*****************9999886 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.22
      TPR_15 223 AlllLgrpkkALeylrkqakenrkdplwllaYA 255
                 A  +L+ p+kAL y++   + ++++ l +++ A
  CCD25221.1 676 AFEKLSYPEKALSYYELACQVQPSSSLAKFKRA 708
                 77789999*******999988888887776655 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0017
      TPR_15 133 lksleeeea.aeqsaafllaraelyrqegqtdaAlrdyreAlalapdsselra 184
                 ++   e+ + a ++a++ +++++ly   g++++A++ y  A++l+p+ ++++ 
  CCD25221.1 724 FE---ELTKlAPEEATVHFILGQLYNIMGRKKDAVKEYTIAMNLDPKGNQVIL 773
                 33...333316699*********************************999975 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       7.3   9.4e+03       8      26 ..     578     596 ..     573     600 .. 0.83
   2 ?    2.3   0.0      0.15   1.9e+02       9      60 ..     613     664 ..     606     668 .. 0.79
   3 !   18.5   0.0   1.3e-06    0.0016      12      72 ..     684     744 ..     680     770 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 7.3
       TPR_9   8 eedweralavverllllaP 26 
                 ++d+ +a+++ e +  l+P
  CCD25221.1 578 QKDHKEAIKAFEKVTKLDP 596
                 6789999999999998888 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.15
       TPR_9   9 edweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 + ++ a  +    +  ++++   ++  G++ ++lG ++ Al  +e + +++p
  CCD25221.1 613 DSFDLAKNYFRKAVSTDSQHYNAYYGIGMCSMKLGEFEHALLYFEKARSINP 664
                 556666666666777889999999999**************99998877666 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 1.3e-06
       TPR_9  12 eralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapdapdaeairaqL 72 
                 e+al ++e+  +++P +    + R+ ll+ + ++  Al+++e    lap+ ++++ i  qL
  CCD25221.1 684 EKALSYYELACQVQPSSSLAKFKRAHLLYSMANYPLALECFEELTKLAPEEATVHFILGQL 744
                 89****************************************************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 5162.41
//
Query:       CCD25222.1  [L=972]
Description: hypothetical protein NDAI_0E04050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-16   60.6   0.1    1.7e-16   60.6   0.1    3.0  3  PH        PH domain
    2.3e-13   50.0   0.2    4.7e-13   49.0   0.2    1.6  1  SAM_2     SAM domain (Sterile alpha motif)
    7.7e-10   38.2   0.2    1.8e-09   37.1   0.2    1.6  1  SH3_1     SH3 domain
    5.6e-08   32.9   0.6    1.6e-06   28.3   0.0    3.3  3  PH_8      Pleckstrin homology domain
    1.4e-07   31.2   0.0      3e-07   30.2   0.0    1.6  1  SH3_9     Variant SH3 domain
    7.6e-06   25.5   0.0    2.1e-05   24.1   0.0    1.8  1  SH3_2     Variant SH3 domain
    1.8e-05   25.1   0.2    4.6e-05   23.8   0.2    1.8  1  SAM_1     SAM domain (Sterile alpha motif)


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.5      0.85   2.2e+03      36      78 ..     596     644 ..     576     662 .. 0.68
   2 ?   -2.3   0.1       2.4   6.2e+03      41      89 ..     658     707 ..     643     711 .. 0.58
   3 !   60.6   0.1   6.5e-20   1.7e-16       3     103 ..     791     900 ..     789     901 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.85
                 T..TCTTESSEEEEEESTTEEEEEEEC....TTSSSSTSEEEEEESTSS CS
          PH  36 d..ksekdkepkgsislsncevvevva....tedpkrkfcfelrivern 78 
                    +s+ + +p ++ s+sn+ev+  ++    + +pk ++  e r ++++
  CCD25222.1 596 NnsSSNDNRRPHHTRSISNLEVSYSRNisssSTTPKDRNNNERRQQPQH 644
                 3566777899999999999999998889886335555554444444444 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.4
                 ESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSST.EEEEEEESS CS
          PH  41 dkepkgsislsncevvevvatedpkrkfcfelriverngs.rtyllqass 89 
                 d++++  ++ ++++++ +v++++ + ++  +lr+++  ++ ++ l++ ++
  CCD25222.1 658 DHDKTVNVDERKTSSSTTVTSARQNSNNLNSLRTPTPLHQrNSSLITSPT 707
                 44444445555555555554668888888888888555543666666555 PP

  == domain 3  score: 60.6 bits;  conditional E-value: 6.5e-20
                 EEEEEEEETSSSSCSEEEEEEEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEEC....TTSSSSTSEEEEEESTSSS........TEEEEEEESS CS
          PH   3 keGwLlkkgsgkkkswkkrwfvLkdsellyykndksekdkepkgsislsncevvevva....tedpkrkfcfelriverng........srtyllqass 89 
                 ++Gw++kk+s+k  +wkkr+f+L++++l+y+ +     d   +g i++++++v   ++      +p  k+cf+l+ ++ ++        +r ++++++s
  CCD25222.1 791 CSGWMYKKSSNKLAIWKKRFFTLHGTRLSYFYDY---NDTMERGLIDITSHQVIPLNNesisLLKPSGKYCFKLIPPQPGSkkgltftqPRIHYFAVNS 886
                 79********9999*************9999888...899999999999999999888999555**********5554444544444334********* PP

                 HHHHHHHHHHHHHH CS
          PH  90 eeerkeWikaiqsa 103
                 ++++++W++a+++a
  CCD25222.1 887 KDDMRSWLAALIKA 900
                 ***********987 PP

>> SAM_2  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.2   1.8e-16   4.7e-13       1      66 []     166     231 ..     166     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 1.8e-16
                 GGGHHHHHHHHHHHHTTT.GGGHHHHHHTTCSHHHHHTTSCHHHHHHTTHHHHHHHHHHHHHHHHHH CS
       SAM_2   1 veswsledvaeWLrsigl.kqytdnFrdagitgaelllrlteedLkrlGitsvghrkkilkkiqelk 66 
                 v +ws++ v+e++ ++g+ ++  +nF +++i+g ++ll+l++++Lk+l+i+s+g r++i+k+iq +k
  CCD25222.1 166 VLNWSPHHVMEYFLKLGFdPKLIQNFGKHKISG-KILLQLELNHLKELDINSFGSRFEIFKEIQYIK 231
                 679******************************.******************************875 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.2   6.8e-13   1.8e-09       6      48 .]      11      56 ..       7      56 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 6.8e-13
                BEXSSTTBXEBSTTEEEEEEEECSS...SEEEEEETTSTEEEEEEG CS
       SH3_1  6 YeaeesdELsfkkGDviivleksed...gWwkgrlkgtgkeGliPs 48
                Y ++++dEL++k GD+i+v+ ++ +   gW+ g++  t+++Gl+P+
  CCD25222.1 11 YLKQMEDELDLKIGDKIKVITDDGKyndGWYLGENLKTKEKGLFPV 56
                8899*****************9988889*****************5 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.9   7.3e+03      13      55 ..     228     270 ..     225     274 .. 0.63
   2 !   28.3   0.0   6.2e-10   1.6e-06       1      70 [.     793     861 ..     793     865 .. 0.91
   3 ?    0.5   0.0      0.29   7.4e+02      21      45 ..     872     896 ..     871     915 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.9
        PH_8  13 gyakRfFvLdlksstlsYyrddnssalrgkiplslaiisanee 55 
                  y k f++  + + +++ ++ +  +  +  i ls +ii + ++
  CCD25222.1 228 QYIKNFYQNTYCKMKITKFTITSTTFDKKPINLSFTIIVIGNK 270
                 5889999998888888888866444333444444456666555 PP

  == domain 2  score: 28.3 bits;  conditional E-value: 6.2e-10
        PH_8   1 gillkkrrkklqgyakRfFvLdlksstlsYyrddnssalrgkiplsla.iisaneekreiiidsGaevWeL 70 
                 g++ kk   kl  ++kRfF+L  + + lsY++d n++  rg i ++   +i  n+e+  +   sG   ++L
  CCD25222.1 793 GWMYKKSSNKLAIWKKRFFTL--HGTRLSYFYDYNDTMERGLIDITSHqVIPLNNESISLLKPSGKYCFKL 861
                 89*******************..99*******************97665*******999998888777666 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.29
        PH_8  21 LdlksstlsYyrddnssalrgkipl 45 
                 L +++  ++Y++ + +  +r  ++ 
  CCD25222.1 872 LTFTQPRIHYFAVNSKDDMRSWLAA 896
                 5677778888887777788876543 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.2e-10     3e-07      10      49 .]      16      60 ..      10      60 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 1.2e-10
       SH3_9 10 ddeLsLqrGDvitvi...eesedgWlegsl..tGrtGlvPanyve 49
                +deL L  GD i vi   ++++dgW++g++  t ++Gl+P+++++
  CCD25222.1 16 EDELDLKIGDKIKVItddGKYNDGWYLGENlkTKEKGLFPVQFTK 60
                8*************9644449********77899*******9985 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   8.2e-09   2.1e-05       6      53 ..       9      58 ..       6      62 .. 0.83

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 8.2e-09
                S-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCG CS
       SH3_2  6 edyvgedkseLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPssl 53
                 +y  + ++eL +k Gd ikv+   +k +dgw++ge+   + +GlfP ++
  CCD25222.1  9 NKYLKQMEDELDLKIGDKIKVITDDGKYNDGWYLGENlkTKEKGLFPVQF 58
                5799999***************54444555*******988999****776 PP

>> SAM_1  SAM domain (Sterile alpha motif)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.2   1.8e-08   4.6e-05       2      62 ..     168     229 ..     167     231 .. 0.93

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 1.8e-08
                 CTTHSSHHHHHHHTTS.GGGHHHHHTTTSSHHHHTTSCHHHHHHCTTTSHHHHHHHHHHHHH CS
       SAM_1   2 kwsvedVgeWLesigl.gqYadlFrageidgdaLlllteddLeklgvtllGHrkkIlyaIqr 62 
                 +ws+  V+e   ++g+ ++ + +F +++i+g+ Ll+l  ++L++l ++++G r  I ++Iq 
  CCD25222.1 168 NWSPHHVMEYFLKLGFdPKLIQNFGKHKISGKILLQLELNHLKELDINSFGSRFEIFKEIQY 229
                 6999999999999999*************************************999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1583  (0.0882927); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6620.59
//
Query:       CCD25223.1  [L=574]
Description: hypothetical protein NDAI_0E04060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-41  139.0   5.1      9e-41  139.0   5.1    2.2  2  NT-C2     N-terminal C2 in EEIG1 and EHBP1 proteins


Domain annotation for each model (and alignments):
>> NT-C2  N-terminal C2 in EEIG1 and EHBP1 proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.0   5.1     5e-45     9e-41       1     146 []       9     257 ..       9     257 .. 0.98
   2 ?   -1.6   0.0      0.11     2e+03      62      87 ..     378     403 ..     347     423 .. 0.77

  Alignments for each domain:
  == domain 1  score: 139.0 bits;  conditional E-value: 5e-45
       NT-C2   1 kkkrpkflldlkihelsnipqssgelyvkwrrkdskgts..................................................ssgttekakv 49 
                 k +rpkfll lki+el nipqssg++yvkw++kd++g s                                                  s+gtt+k+ v
  CCD25223.1   9 KERRPKFLLFLKINELVNIPQSSGYCYVKWHLKDGTGISphpkissttndsiniskrdsnatipngvsssssgsankttndidkiamnqSHGTTPKVLV 107
                 679************************************************************************************************ PP

       NT-C2  50 qngraewneelkipvtlfln.kkgkkfeeKllelsvysvl..................................................skskkk... 94 
                 ++++++wn  l++p++++l+ +k++++++K+++++v++++                                                  s+s+k+   
  CCD25223.1 108 KHHKVQWNFALSKPLQIKLQvDKSRNLQNKYMKFDVFFEFldsnsssyctspikcrtstdtnkgtgddeedmkkikrktsissmkstgsnSYSQKIsgk 206
                 ******************************************************************************************666666666 PP

       NT-C2  95 kelGkvelnlaeyvnedeepttsrfllkkskkvnsilslsiqlkllrgdydd 146
                  +lG+++++++eyv+ +e   t+rfll++s k nsi+++s+qlk+ rg+y+d
  CCD25223.1 207 ILLGSITIDITEYVKPNEMAFTNRFLLQDS-KINSIINVSLQLKIFRGSYND 257
                 7*****************************.*******************97 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.11
       NT-C2  62 ipvtlflnkkgkkfeeKllelsvysv 87 
                 ++ +l+ +++ ++f +K++  ++ + 
  CCD25223.1 378 KTFQLSWDPRPNEFTPKECINDILNG 403
                 66788899999999999998887777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1418  (0.0790897); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4076.26
//
Query:       CCD25224.1  [L=429]
Description: hypothetical protein NDAI_0E04070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-25   88.1  11.5    5.9e-25   88.1  11.5    2.1  2  PAP2_3    PAP2 superfamily
    1.2e-12   47.8  14.1    1.6e-12   47.4   7.1    2.5  2  PAP2      PAP2 superfamily
  ------ inclusion threshold ------
       0.45   10.8   0.1       0.45   10.8   0.1    2.0  2  Orf78     Orf78 (ac78)


Domain annotation for each model (and alignments):
>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   3.2     0.053   3.1e+02      38      88 ..      45      98 ..      43     118 .. 0.65
   2 !   88.1  11.5   9.8e-29   5.9e-25      22     188 ..     138     310 ..     119     312 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.053
      PAP2_3 38 slhfqvtllvlvllf.lrrrerlre..flttlllatllgllvyalfPaagPrll 88
                +lh+  +  vl+++f ++  + l +  f+  + l++l+ +++ ++f a++   +
  CCD25224.1 45 ILHYGFLSSVLLFVFvTNPASFLSKllFYSFMSLLFLIPITSQFFFNALPVLTW 98
                588999999999999555555555522344455666678888888888887555 PP

  == domain 2  score: 88.1 bits;  conditional E-value: 9.8e-29
      PAP2_3  22 llahpalavilala.Yaslhfqvtllvlvllf.lrrrerlreflttlllatllgllvyalfPaagPrll.....eeagfvdtvaaaslagalrdgasra 113
                  +++ ++ +ila+  Y ++hf ++++v+++lf +  ++ l+ f++++ +++l g+++   fPaa+P++      ++a++ +  +++ la+   d+ +  
  CCD25224.1 138 ATSTNNFLDILAWLpYGVFHFGAPVVVAIILFiFGPPTILQGFAFAFGYVNLFGVIIQNIFPAAPPWYKilyglDPANYSMHGSPGGLAR--IDEIFNI 234
                 455566777788878***************************************************988887777777777777777777..5555555 PP

      PAP2_3 114 vllrgtienglaa...fPSlHvawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalvai 188
                 +l++++++n+ +    fPSlH + a+l+al++ ++ ++   ++l+++++v+++++t+++ +HY+vD++ G ++ l+++
  CCD25224.1 235 SLYTTAFSNSSVIfgaFPSLHSGCATLLALFFSYTFPRL--KPLFIFYVVWLWWSTMYLTHHYFVDLMIGSVISLMVF 310
                 6666677776664555***************99999988..*******************************999876 PP

>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.6     0.005        30      83     110 ..      68     109 ..       2     112 .. 0.68
   2 !   47.4   7.1   2.6e-16   1.6e-12       6     130 ..     181     316 ..     177     321 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.005
        PAP2  83 g..............lvllalillllavlvalsRlylgvHfl 110
                 +              ++   +++ +l vl+++s ++   Hf+
  CCD25224.1  68 SkllfysfmsllfliPITSQFFFNALPVLTWASLYFTSSHFP 109
                 12222223344566677778899999***********99998 PP

  == domain 2  score: 47.4 bits;  conditional E-value: 2.6e-16
        PAP2   6 llalalaalltsvlKdlvgrpRPfflaeetkldtqvstletses.....................keakesfPSgHsafafalalllalllrrkrkkig 83 
                 ++a +  +l+ +++ +++    P + + ++ ld+  +++++s+                      + ++  fPS Hs  a++lal+++++++r+++   
  CCD25224.1 181 AFAFGYVNLFGVIIQNIFPAAPPWYKILYG-LDPANYSMHGSPGglarideifnislyttafsnsSVIFGAFPSLHSGCATLLALFFSYTFPRLKPL-- 276
                 555555556666666666654444444433.333334444444456677777777777777778889999***************************.. PP

        PAP2  84 lvllalillllavlvalsRlylgvHflsDvlaGlliGialaalayrl 130
                        +++++v+ ++s +yl +H++ D+++G +i+++++ +++++
  CCD25224.1 277 -------FIFYVVWLWWSTMYLTHHYFVDLMIGSVISLMVFQYVKYY 316
                 .......9********************************9988876 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.4       1.3   7.8e+03      72      85 ..     303     316 ..     293     324 .. 0.75
   2 ?   10.8   0.1   7.5e-05      0.45      12      51 ..     362     401 ..     358     422 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.3
       Orf78  72 avvcvlvllyviyY 85 
                 +v++++v  yv yY
  CCD25224.1 303 SVISLMVFQYVKYY 316
                 67888899999998 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 7.5e-05
       Orf78  12 ekvdyIPLKLAlndldnddndkaenkkekksaaekndite 51 
                 + v+  PL L lnd+++++n++++n++++ ++++++++ +
  CCD25224.1 362 NDVENGPLELELNDFEYEKNNENNNQTDTFRSESDESSIS 401
                 679999*********9999999999988877776665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3219.52
//
Query:       CCD25225.1  [L=495]
Description: hypothetical protein NDAI_0E04080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-131  438.1  26.7   3.7e-131  437.8  26.7    1.1  1  ALG3      ALG3 protein


Domain annotation for each model (and alignments):
>> ALG3  ALG3 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.8  26.7    2e-135  3.7e-131       2     358 .]      63     452 ..      62     452 .. 0.96

  Alignments for each domain:
  == domain 1  score: 437.8 bits;  conditional E-value: 2e-135
        ALG3   2 llllleavllvliikkvpYTeIDwkaYmqqvelfln.gerdYsklkGdtGPlvYPagfvyiyslly.sltdegenirlaQviFavlylltlllvlaiya 98 
                 +lll+e+++l++ii k+pYTeID+kaYm+q+e+++  +e+dYsk++G+tGPlvYPag+v+iy+l+y ++td++eni+ +Qv+F++lyl+tll ++++y+
  CCD25225.1  63 ILLLIESIVLKYIIFKIPYTEIDYKAYMEQIEMITYdNELDYSKIRGGTGPLVYPAGHVFIYKLMYkWITDGMENIHDGQVVFRYLYLITLLGQFICYY 161
                 799******************************986599**************************8789****************************** PP

        ALG3  99 kakvppyvlvllvlskRlhSiyvLRlFNDcvavlllvlaillllkkrw............................tlgsvlyslavsvKmnvllflPa 169
                  + ++p+++vl+++skRlhSiyvLRlFNDc++++++v++++lll+  +                            ++ s+lys+a+s+Kmn+ll++P+
  CCD25225.1 162 IMGLKPWCVVLACMSKRLHSIYVLRLFNDCFTTAVMVWVVVLLLCGGKllefksstkkmqdnssktikkwhliclsIVISILYSFAISIKMNALLYFPS 260
                 *************************************99999999766688899999******************999********************* PP

        ALG3 170 lll.llllkeg.llktlaallvialvqvllglpFlltnpveYlkraFdlsrqFlykwtvNwrflseevFlskefalaLLllhllllllfaltrwlkska 266
                 +++ l+l++eg ll+++ +l+vi+ +q++++lpFl+t+p+eY+++aF+++r+F+++w++Nw+fl+e++F+++ f+l+LL++h++lll+++l+++ +   
  CCD25225.1 261 IMIsLYLINEGqLLNIIGYLFVICGIQTIIALPFLKTYPMEYFENAFNFGRKFMFEWSINWQFLHEDAFNNEFFHLSLLICHVMLLLTVILIKYPDFLL 359
                 ***888888888***********************************************************************************9987 PP

        ALG3 267 kl.eavekkllkklkkkkeskelsaelillvlftsnliGivfarsLHYQFyswyfhslplllwstklslvlkllllllieyawnvyPstelsS 358
                 ++ e+++  l+++++++k++ ++ +++i+++++++n++G++f+rsLHYQF+swy+++lpll+++++++++l  +++l++ey+wn+yP+++ +S
  CCD25225.1 360 NVlESLSYPLSETITNNKDNLNSITSIICYIVIVTNFVGVIFSRSLHYQFLSWYHWTLPLLIHWSHMPIYLGPMWYLIHEYCWNSYPPNKGAS 452
                 541556666777888899999*******************************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1027  (0.0572815); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3632.71
//
Query:       CCD25226.1  [L=1016]
Description: hypothetical protein NDAI_0E04090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00022   21.0   0.2    0.00058   19.7   0.2    1.8  1  LisH      LisH


Domain annotation for each model (and alignments):
>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   3.2e-08   0.00058       2      27 .]     180     205 ..     179     205 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 3.2e-08
                 HHHHHHHHHHHHCT-HHHHHHHHHHT CS
        LisH   2 eLNrLIydYLvkeGyeetAeaFekEa 27 
                 +LN++I+++L+k  +++tA+ F++E+
  CCD25226.1 180 LLNQYIHEFLLKGSLNKTAKLFAEET 205
                 7************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1016 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3775  (0.210553); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.90u 0.37s 00:00:02.27 Elapsed: 00:00:00.64
# Mc/sec: 4770.52
//
Query:       CCD25227.1  [L=401]
Description: hypothetical protein NDAI_0E04100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-14   52.9 102.0    6.2e-14   52.5  27.1    2.2  2  DUF5349   Family of unknown function (DUF5349)
  ------ inclusion threshold ------
        0.1   13.0   0.2        0.1   13.0   0.2    1.9  2  MCM_lid   MCM AAA-lid domain


Domain annotation for each model (and alignments):
>> DUF5349  Family of unknown function (DUF5349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5  27.1     7e-18   6.2e-14       1     109 [.       1     107 [.       1     115 [. 0.87
   2 !    6.4  66.9   0.00075       6.7      80     330 ..     132     398 ..     122     401 .] 0.69

  Alignments for each domain:
  == domain 1  score: 52.5 bits;  conditional E-value: 7e-18
     DUF5349   1 mPGkIiSipFLsQnEDmdkYLleYrslkllpqnsnsfhqsanhsryrhlkynnvnryayknngnnsslndsnqaGlksinrsissasygsynnNrnvnv 99 
                 mPG+IiS+pFLsQ+E +d  L +Yr+ k     s s   ++  + y+h++y+  nr+ y+nn+nn++ n+s +     + ++i+  +   ynnN n+n+
  CCD25227.1   1 MPGQIISTPFLSQLEEIDIRLTNYRNSKSSSSTSSST-STSTSTYYNHSQYQSKNRFNYNNNNNNNNNNNSYYRQHSAMHNDITILN-NNYNNNCNNNI 97 
                 9***************************988777777.77778899*******************9888888877777778776655.99********* PP

     DUF5349 100 psmgkqkqqk 109
                 ++ +k ++++
  CCD25227.1  98 NKYNKYNGTN 107
                 *999987665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00075
     DUF5349  80 nrsissasygsynnNrnvnvpsmgkqkqqk.....kqrlsaksnklnqqkvkgvsqyssnllvtthlKQaYpQlyYnsannsanea.nvassnannsnn 172
                  ++ +s +  s+n+N+n+n    +++   k     + ++ + +n+ n +   + s   +n++++thl+ +YpQ+y    n s n++  +a++ +nn  +
  CCD25227.1 132 RNNYNSNN--SNNTNKNNNHHTTTNNYLDKrkqyyNNKPYGYNNNVNFNNNMNASESNQNPMMSTHLRNTYPQMYSHMRNTSMNNTtSTANATNNNLSS 228
                 45556655..9999***995555555433300000333334455555555556677789****************999888888875444555555556 PP

     DUF5349 173 entlfnsasfstsyepsnkspvltsstsssassydsseFdyilPsssaassstsatssssnnslntnvst...saslsgdllddlpvaptasslvg... 265
                  n   + +s +   +p +   + +s   +++ + +s++ +y++  +  + sst   + ++  +lnt +++   ++     ++ ++p++++    ++   
  CCD25227.1 229 TNMDIQPSSIQLPVTPTPYLDMTSSIHHNQSMNNNSTTSNYLMKENQFY-SSTAMEQPKPTYPLNTFPTSfhnNTNDNNGIISPIPSSNSNLISNSmfl 326
                 6777788888999999999999999999999999999999988777777.4444445555566666666511144444557888888766555555555 PP

     DUF5349 266 .........dlsstetvsnlsasqallessaassslglsnslalqasnsgqaslredistaplnlsdsdslLmn 330
                          ++s+++++   ++ ++ + ss  s+++g++++  +++ n+      ++is  + n ++ + l+mn
  CCD25227.1 327 tpnntqnrsSSSTSNGFMMNEGATTNSGSSNNSNPIGMNSIWNNNNNNNN-INFNNGISNGN-NNTNFNGLMMN 398
                 77777666566667777777999999999********9999877775554.56677777766.77888899998 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.85   7.6e+03      21      37 ..     147     163 ..     131     169 .. 0.67
   2 ?   13.0   0.2   1.1e-05       0.1      11      54 ..     185     228 ..     177     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.85
                 HHHHHHHHHHHHHHHHH CS
     MCM_lid  21 eakeklseaYvelRkee 37 
                 + +++ ++ Y++ Rk+ 
  CCD25227.1 147 NNHHTTTNNYLDKRKQY 163
                 44556677888888876 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.1e-05
                 HHTT--BETCHHHHHHHHHHHHHHHHHTSSTSSSST--HHHHHH CS
     MCM_lid  11 rekikPklseeakeklseaYvelRkeeedskrksipitvRqLes 54 
                  ++ +P++s++ +++  ++Y ++R++++++++++  +t  +L s
  CCD25227.1 185 ESNQNPMMSTHLRNTYPQMYSHMRNTSMNNTTSTANATNNNLSS 228
                 56889**********************88899999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2686  (0.149813); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 2730.79
//
Query:       CCD25228.1  [L=563]
Description: hypothetical protein NDAI_0E04110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-90  300.7   0.1    1.2e-89  300.4   0.1    1.1  1  GatB_N     GatB/GatE catalytic domain
    5.5e-24   84.7   4.8    1.1e-23   83.8   4.8    1.5  1  GatB_Yqey  GatB domain
  ------ inclusion threshold ------
       0.01   15.7   0.8        1.1    9.0   0.1    2.6  2  DUF2202    Uncharacterized protein domain (DUF2202)


Domain annotation for each model (and alignments):
>> GatB_N  GatB/GatE catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.4   0.1     2e-93   1.2e-89       2     273 .]      32     318 ..      31     318 .. 0.95

  Alignments for each domain:
  == domain 1  score: 300.4 bits;  conditional E-value: 2e-93
                 EEEEEEEEEB--SB-SSSSSBSSS..SCESTTSS--TTTTTSTT..--EEHHHHHHHHHHHHHTTEEE-SEE-EEEEE-TCTTCTTSEEEEESSS.SEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N   2 viGlEiHaqlktksKlFssastee..egeepnsevsevdlalPGtlPvlnkeavelaikaalalnceiaeeskfdRKnyfypdlpkgyQitqkeeplak 98 
                 ++GlEiH+ql+tk+KlFss+ +++  ++e+pns+++ +dl+lPGt+P ln+e +  a+k++laln++i+ +s+fdRK+yfy+d+p+gyQitq+++p+ak
  CCD25228.1  32 KCGLEIHTQLNTKKKLFSSSINHHpsSSETPNSHTNFFDLSLPGTQPILNHESILFALKLSLALNSKINLNSQFDRKHYFYADQPQGYQITQHYSPFAK 130
                 89****************988664435667********************************************************************* PP

                 EEEEEE..........TEEEEEEEEEEEE---EEEE..EETTEEEEETTSTT-EEEEEEE-STB-SHHHHHHHHHHHHHHHHHHTSB--SGGGTTEEEE CS
                 xxxxxx..........xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N  99 eGslel..........ekkvrierihlEeDaaksvh..eekeeslvdlnRaGvpLiEivtepdlrspeearavveklrellralgvsdgnmeeGslRcD 185
                 +Gsl+l          +kk++i ++++E+D+a+s++    ++ +l+d+nR+ vpLiE+vtep++++ ++++a+++k ++l+r+l++s+g++e+G++R+D
  CCD25228.1 131 HGSLTLyhdidnikepTKKINIIQLQIEQDTARSIYlqPPQNLTLLDFNRSNVPLIELVTEPEFNDIDQIKAFIRKYQNLIRHLHISTGDLEDGAMRID 229
                 ******99999999988999***************97536679******************************************************** PP

                 EEEEECTSETTSSS.--EEEEEE-SHHHHHHHHHHHHHHHHHHH..........-EEEEEETTTTEEEEECC----...-EEE-TTS--EE--HHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      GatB_N 186 vNvSvreeekgeeegtrvEiKnlnslksiekaieyeierqiell..........qeTrkfdedkgetvslRskeeaedYryfpepdlppleiseelie 273
                 vNv+v+e+        rvE+Knl +++si kai+ye+++q+++l            T+++d +  +t++lR+ke+  dYry+p+p+lp++++s+elie
  CCD25228.1 230 VNVNVNEH-------PRVELKNLPNTTSIIKAIKYEYTQQVQTLlnqkngdvfeGGTKSWDGQ--KTIKLRNKETMVDYRYMPDPELPTITLSTELIE 318
                 ******55.......8*************************************999*****99..9****************************9986 PP

>> GatB_Yqey  GatB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   4.8   1.8e-27   1.1e-23       7     148 .]     397     561 ..     393     561 .. 0.87

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 1.8e-27
                 HHHSS.HHHHHHHHHTCHHHHHHHHTXXTTC...SSTTHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHH.TXXH..........HHHHHHCTXXXXX.. CS
   GatB_Yqey   7 vkegadaklaanwllnellgelnkegleiee...lkltpeqlaellkliaegkIskkiakevleellee.gksp..........eeiieekgLkqis.. 89 
                 v+e +  kl++nw+++el+g+l+k  ++++e     ++p  +ae+l+li+++ Is+++ak +l+e+l++ + s            ++i++++L+ i   
  CCD25228.1 397 VNEKSPLKLPTNWIIHELIGNLKKLSISFNEfnaKCMNPPTFAEFLTLIKQNVISNSSAKFLLFEILKQfKDSSsmmtkmeidlPKLIKKYNLETIDes 495
                 5666689************************44336899****************************9955555899*****99************944 PP

                 ...XSSXHHHHHHHHHHTX.HHHHHHHTTXXT...TSTHHHHHHHHHTTSSXSXHHHHHHHHHHHS CS
   GatB_Yqey  90 ...deeeleklveeviaen.pkavedyksgke...kalkflvGqvMkktkGkadpklvnellkekL 148
                     +e + ++++ vi++  ++ + ++k g +   k lk+l+Gq Mk +kGk+ pk+++  l+++L
  CCD25228.1 496 nekGQEFINEICNSVIEQTsNDLITEIKMGGKnkeKKLKYLIGQSMKLSKGKISPKEIESCLNKIL 561
                 3333456***********96667****98755556****************************987 PP

>> DUF2202  Uncharacterized protein domain (DUF2202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0051        30       5      65 ..     152     220 ..     148     237 .. 0.75
   2 ?    9.0   0.1   0.00019       1.1      45      95 ..     480     527 ..     460     548 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0051
     DUF2202   5 llymreeeklarDvYle......l..YdrwklqiflniakseqthtdavksllekYeledpvkederGk 65 
                 +++++ e   ar +Yl+      l  ++r ++ + + +++ e + +d++k +++kY+     ++ + G 
  CCD25228.1 152 IIQLQIEQDTARSIYLQppqnltLldFNRSNVPLIELVTEPEFNDIDQIKAFIRKYQNLIRHLHISTGD 220
                 677777888888888643333223457899999***********************9765555555555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00019
     DUF2202  45 vksllekYeledpvkederGkfedeelqelYnkLvekgsksledaLkvgat 95 
                 + +l++kY+le+ ++++e+G+   e ++e+ n+++e++s++l   +k+g +
  CCD25228.1 480 LPKLIKKYNLETIDESNEKGQ---EFINEICNSVIEQTSNDLITEIKMGGK 527
                 568**************9995...77899************9998888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4110.50
//
Query:       CCD25229.1  [L=1579]
Description: hypothetical protein NDAI_0E04120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.8e-133  445.8   9.6   1.2e-132  443.7   9.6    1.9  1  Nucleoporin_C  Non-repetitive/WGA-negative nucleoporin C-term
   2.2e-120  402.4  17.6   2.2e-120  402.4  17.6    2.7  3  Nucleoporin_N  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> Nucleoporin_C  Non-repetitive/WGA-negative nucleoporin C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  443.7   9.6  1.3e-136  1.2e-132       1     596 []     873    1475 ..     873    1475 .. 0.98

  Alignments for each domain:
  == domain 1  score: 443.7 bits;  conditional E-value: 1.3e-136
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.................................XXXXXXXXXXXXXX................ CS
  Nucleoporin_C    1 lasleqnleyrlssLeiLaeflksngeslsr.................................dtrwellwqAEkiaaatalWklqeeflaer 61  
                     +++++++++y+lss++iL+ef+ s+++s++                                  d+ +e+ +qAE+ia                
     CCD25229.1  873 ISISKNEIQYYLSSIMILNEFFISYSDSITIfaaptlstssatntttttttnnnnpntlssvskDKYEEVSNQAENIA---------------- 950 
                     589***************************************************************************................ PP

                     ......XXXXXXXX.......................................XXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXX. CS
  Nucleoporin_C   62 sekktllnsiieliklneeageeDaVRhwFihdvdrleiiiawaykvikdlksnsikealsflnvllEanevvlaaleeafefrkenaafygie 155 
                           +nsii+l                                        +sike+lsflnvl+E+        +e +++++++++f++i 
     CCD25229.1  951 ------INSIIKLT---------------------------------------ESIKESLSFLNVLYEE--------SELDGIDNRSNSFKDI- 990 
                     ......********.......................................****************........****************. PP

                     ......XXXX.......XXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHH CS
  Nucleoporin_C  156 eekledekwtstsvivenlerlldLtklllkdlfapn..........lssiinrnisrgesieleatllqeicgslcsltdvllfraiErlrwa 239 
                           ++++       n+e++ +L++l +k+lfapn          lssiinrnisrg+sie++at+lq++cgs+cs++d+l+fraiE+lr+a
     CCD25229.1  991 ------INFL-------NVENQSNLIDLNFKHLFAPNdqtkslikdiLSSIINRNISRGASIEYMATTLQDRCGSFCSAKDILGFRAIEHLRKA 1071
                     ......****.......***************************************************************************** PP

                     HH........HHHHHHHHHHXXXXXXXXX.........XXXHHHHHHHHHHHHTSXHHHHHHHHHHHHH..HHHXS.............SSSXH CS
  Nucleoporin_C  240 ke........qkdkklqnaikllekaydearkeqilkLlsigkleeaielaekledfralvellleianklasdkg.............ederk 312 
                     ke        +++++l+na+kl+e+++d+         +s +kl+ea++++ +l++f++++e+ll+ia+   +d+g              derk
     CCD25229.1 1072 KEiglnkdndNLHYHLDNAMKLFENIVDD---------ISQEKLDEAVQIMVSLDYFPKTIEFLLNIAS--LIDRGnlayqyldngsmeYDERK 1154
                     *****************************.........******************************9..45555556667744555567777 PP

                     HHH......HHHHHHH.................................................................SSSXXHHHHHHHH CS
  Nucleoporin_C  313 elyekaeelekriely.................................................................fekfgkaFayalY 341 
                      +y      +kri++y                                                                 +++++k+F+y+lY
     CCD25229.1 1155 IYY------DKRINIYdlvfrvlttiderssivsttttittpttsskknpieietptntvitrysgntnfnklreesyniaLRCNDKLFHYHLY 1242
                     777......************************************************************************************* PP

                     HHHHHTTXGGGGGGX..XXTTHHHHHHHTX....XHHHHHHTHHHHXXSHHHHHHHHHHHHSSSSXXXHHHHHH.HHHH..............X CS
  Nucleoporin_C  342 dwlisqgqqekLLdlkedtsfilpFLrekp....elakllWiydvkekdfeeAAeiLysLalskeqlvlskrie.LSla..............k 416 
                     dwl+s+++q+kLL+l  dtsfilp+L ek+    ++++llW+y++k+++f+eAAeiLysL++sk++l+l++ri  LS+a              +
     CCD25229.1 1243 DWLVSTDNQDKLLQL--DTSFILPYLIEKStnslKISNLLWVYQSKKHNFFEAAEILYSLSISKFELKLNERISfLSRAngfcnsvcppnqkqR 1334
                     ***************..***************************************************************************** PP

                     ---HHH................HGGGHHHHHHHHHHHHHHHH.......................H-TT..S-HHHHHHHHHHHHHS---HHHH CS
  Nucleoporin_C  417 LaqLaeleesekekkglekklekieellevaaiQddllalilpsiegaidekaeveLamekfgkklderpalrqllkdelkklLkhkildasdL 510 
                     ++qLa+                +i+el+evaaiQdd+l+l++                       +d r  l++++k++l+++L+++il++++L
     CCD25229.1 1335 MVQLAS----------------TIQELFEVAAIQDDILTLVK-----------------------TDPR--LDMQIKSDLINQLDGEILPLTSL 1387
                     ******................********************.......................****..*********************** PP

                     HHHTT.........TTTT-HHHHHHHHHHTT---HHH............HHHHHHHHHHHHHHH-.......................HHHHHH CS
  Nucleoporin_C  511 idlltLidtkeeeedplgefelALkvlkvsdlrneeeealekliWRRcvIrddWeelnetkkked.......................akvekk 581 
                     +++++         dplg++e++L+++kvsd+rn+ee            I+++W+el+e++k e                        +kv+k+
     CCD25229.1 1388 FNDYA---------DPLGYYEICLNIFKVSDFRNSEE------------ILSKWNELFESLKLELkktndvdylqdsktfinllssviTKVGKQ 1460
                     *****.........***********************............************999999*************************** PP

                     HTT-TTTS-HHHHHH CS
  Nucleoporin_C  582 lsstalvftlsellk 596 
                     ++s++lvf++s+l++
     CCD25229.1 1461 VHSSELVFPISKLFP 1475
                     ************995 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  402.4  17.6  2.4e-124  2.2e-120       2     434 .]     163     704 ..     162     704 .. 0.95
   2 ?    0.8   2.9     0.018   1.6e+02     264     359 ..     844     946 ..     798    1005 .. 0.65
   3 ?   -4.0   0.0      0.49   4.4e+03     173     207 ..    1322    1358 ..    1297    1363 .. 0.55

  Alignments for each domain:
  == domain 1  score: 402.4 bits;  conditional E-value: 2.4e-124
                    E-SCEEEEEEE--HCHHHTTS--SS-EEEEEECTTTEEEEEETTEEEEEETTSSSS...EEEEEE----S---EEEEEE---SSSS-SSSCEEEEE CS
  Nucleoporin_N   2 etdfykvsklalPdelleelnhtesstkgglfpeigrawitvdnklflWnYnstasspstdtipydgeehtilavglLvkpkpgtfveevgllLvv 97 
                    +t++++++ ++lPdell+e ++++ +t++g+fp+++r wi++dnkl+lWn+n+++     d++++d+++htil+v+ Lvkpkp+tf  e+++lL++
     CCD25229.1 163 FTPLERTKIINLPDELLQETSKASIKTDMGIFPQLDRTWIIIDNKLILWNHNDPT-----DYQSIDEIKHTILKVA-LVKPKPNTFINEINHLLLI 252
                    8899999988********************************************6.....****************.******************* PP

                    CTTSEEEEECECCS--------EEEEEEEE--EETT.TTEEEEEEETTTC-EEEEETTS..SEEEEEEC-SSS-CEEEEEEEEE-SSSS-.....- CS
  Nucleoporin_N  98 attgeivyweviysaasllstnelslfntdlsvssdgeivtqvinseptgriflagstg..rlyeltyrdssgwpslkckkicltkgglssll..s 189
                    at+++i++++v+y+ +    +nels+fnt++svs++g+ v++++++e+tg+if++g+++  +++el+y+ s++w+++k +kiclt++++  ll  +
     CCD25229.1 253 ATPFDIYILAVSYNGK---NSNELSVFNTGMSVSVNGLAVNDIVSYEKTGQIFFSGRSNglNIWELQYTGSDDWFNSKSNKICLTQSSWANLLpsN 345
                    ***************5...69*********************************************************************666785 PP

                    -SSS--G...............................................----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-E CS
  Nucleoporin_N 190 ilpgvls...............................................gasereeivqlridssrrilytlsskgvirvydlsasngess 238
                    +++++                                                  +++re+++ql++d+sr+ +y+lss + ir+y +  +  +++
     CCD25229.1 346 VISKIQIpgselissffqnnttsttttnknanatdsidgsdnldindnnnphnkRKYTRETVIQLNVDQSRGVIYSLSSNSIIRAYLIK-N--NNT 438
                    544444455555555555********************************************************************999.5..569 PP

                    EEEEEEHHHHHHHH...HHSCHTTTCGCTTT-EEEEEEES-TTTSSCEEEEEEECSSSEEEEEEEEEEEECTTT-EEEEEEEEE............ CS
  Nucleoporin_N 239 lksdidirqillea..itesliasaplaskslkildispvsaeessllhlvaitsngvrlylllsssssdspsalslvsvrfpp............ 320
                    l+ +++i ++++++  +t+ ++++a l++++l+i++i+pvs++ +++l++vait++gvrly+++s+  ++s +a+ l+s++fpp            
     CCD25229.1 439 LSDPVTIHPSYISRiiTTTMAKGAAVLGKNYLQIVKIVPVSQQQNNNLFFVAITVTGVRLYFNGSIN-INSIEAICLESIKFPPssatpekirlel 533
                    **************98888889999****************************************99.**************************** PP

                    ................EEEECCCCCSSSSS..SSBECC-CC....SSETTCEEEEEEES-.................................-SE CS
  Nucleoporin_N 321 ................krlntysskllenk..kksklllps....kiispgiflfvvfdk.................................ssa 361
                                     ++  yss++++ k  kks +ll +    +i+spgif+++v++k                                  + 
     CCD25229.1 534 ekqqnndqqkrrtapfFSSFNYSSESIQLKlqKKSAVLLTTtdasTIVSPGIFVASVIKKskippsssspshqdqtttppptttttkakphyhYDR 629
                    **********77777777777777777777*99************************************************************9** PP

                    EEEEEEEE-TTTTSSS.ESEEEECCS--SE-EEEEE--T--T--CCCCCCSSTTCTTT.TS---EEEETTTEEEE CS
  Nucleoporin_N 362 vvlvslpdtgilkksq.lvedasflpldgkwediislrksfdatilpsgyenesatqy.keParvalltntGvvi 434
                    +++v lpd+g lk+++ ++e+a+fl++++ +++ii+l++ f+at +p gy+n++atqy +e +++a++t+t+++i
     CCD25229.1 630 KLFVTLPDYGVLKYHGkYIENATFLDTTAHVKQIIPLTPTFNATEKPIGYANQFATQYnSENLQIAVVTDTSIEI 704
                    **********************************************************999**********9976 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.018
                    CTTT-EEEEEEES-TT....TSSCEEEEEEECSSSEEEEEEEEEEEECTTT-EE..EEEEEEEEEEECCCCCSSSSSSSBECC-CCSSETTCEEEE CS
  Nucleoporin_N 264 askslkildispvsae....essllhlvaitsngvrlylllsssssdspsalsl..vsvrfppkrlntysskllenkkksklllpskiispgiflf 353
                    ++++ k++  +p++++    + s++ ++ i+ +++++ + lss+++ ++ ++s+  + ++f   +++++ss+ ++++       +    +p ++ +
     CCD25229.1 844 VFITSKPVATTPIKSNtmdnKKSQIDIIGISISKNEIQYYLSSIMILNEFFISYsdSITIFAA-PTLSTSSATNTTT-TTTTNNN----NPNTLSS 933
                    566678888888888888888999*************77778875666666666665555555.3444444444444.3333333....3666666 PP

                    EEES-.......- CS
  Nucleoporin_N 354 vvfdk.......s 359
                    v +dk        
     CCD25229.1 934 VSKDKyeevsnqA 946
                    6666655555441 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 0.49
                     EEEEEEE-SSSS-.....--SSS--G----GG-EEEE CS
  Nucleoporin_N  173 kckkicltkgglssll..silpgvlsgasereeivql 207 
                      c+ +c+++     ++  s ++ ++ +a  +++i  l
     CCD25229.1 1322 FCNSVCPPNQKQRMVQlaSTIQELFEVAAIQDDILTL 1358
                     2444555555444222567777777788888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1200  (0.0669307); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.27s 00:00:01.21 Elapsed: 00:00:00.44
# Mc/sec: 10822.75
//
Query:       CCD25230.1  [L=119]
Description: hypothetical protein NDAI_0E04130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-49  166.4   0.1    1.8e-49  166.2   0.1    1.0  1  Atg8      Autophagy protein Atg8 ubiquitin like
    2.5e-05   24.6   0.0    3.2e-05   24.3   0.0    1.2  1  APG12     Ubiquitin-like autophagy protein Apg12


Domain annotation for each model (and alignments):
>> Atg8  Autophagy protein Atg8 ubiquitin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.2   0.1     2e-53   1.8e-49       1     104 []      13     116 ..      13     116 .. 0.99

  Alignments for each domain:
  == domain 1  score: 166.2 bits;  conditional E-value: 2e-53
                 HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---S-SEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEETTE-SSTTSBHHHHHHHH--TTSSEEEEEES CS
        Atg8   1 krkkesekirekypdriPvivekaekeklpeldkkkylvPedltvgqlvliirkrlqlepekalfllvnetlpstsatmsalyeeekdedgflyvvyss 99 
                 krk+ese+i ek+++riPvi+ekaek++++e+dk+kylvP+dltvgq+v++irkr+ l peka+f++vn+tlp+t+a msa+y+e+kd+dgflyv+ys+
  CCD25230.1  13 KRKAESERITEKFQNRIPVICEKAEKSDIQEIDKRKYLVPADLTVGQFVYVIRKRILLPPEKAIFIFVNDTLPPTAALMSAVYQEHKDRDGFLYVTYSG 111
                 79************************************************************************************************* PP

                 SSTB- CS
        Atg8 100 entfG 104
                 entfG
  CCD25230.1 112 ENTFG 116
                 ****9 PP

>> APG12  Ubiquitin-like autophagy protein Apg12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.5e-09   3.2e-05      11      87 .]      40     116 ..      31     116 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.5e-09
                 TS---S--EEEEETTSBHHHHHHHHHHHCT-.SSSS-EEEETTTB---TTSBHHHHHHHH-.BTTEEEEEEESSS--- CS
       APG12  11 dvpilkkkklkvnasdtvakvilflkkeLklqaseslflYvnnsFaPsPdeeveeLyecfg.tdkklvlnYcisvAfG 87 
                 d+  + k+k+ v a  tv +++  ++k++ l+ ++ +f++vn++  P+    +  +y+ ++  d+ l ++Y+ +  fG
  CCD25230.1  40 DIQEIDKRKYLVPADLTVGQFVYVIRKRILLPPEKAIFIFVNDTLPPTA-ALMSAVYQEHKdRDGFLYVTYSGENTFG 116
                 566788999************************************9875.678999**9996788888****999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 889.56
//
Query:       CCD25231.1  [L=1071]
Description: hypothetical protein NDAI_0E04140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.7e-244  810.9   1.7   1.1e-243  809.9   0.3    1.9  2  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
    1.8e-26   92.9   0.1    7.3e-26   90.9   0.0    2.1  2  Anticodon_1   Anticodon-binding domain of tRNA
    2.3e-16   59.6   2.4    2.3e-05   23.4   0.4    3.5  3  tRNA-synt_1g  tRNA synthetases class I (M)
    0.00042   19.8   0.0     0.0013   18.2   0.0    1.8  1  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
  ------ inclusion threshold ------
      0.094   12.7   0.7        1.5    8.8   0.0    2.8  2  DUF2766       Protein of unknown function (DUF2766)


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  809.9   0.3  3.1e-247  1.1e-243       4     601 ..      19     640 ..      16     641 .. 0.99
   2 ?   -0.2   0.1     0.062   2.2e+02     362     397 ..     882     917 ..     827     932 .. 0.72

  Alignments for each domain:
  == domain 1  score: 809.9 bits;  conditional E-value: 3.1e-247
  tRNA-synt_1   4 ekWeeedvfkkelekekekkefilvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkklgreefr 101
                  ++W+e d+f+++le +++k+ef+++dgPP++tG++H+Gh+la+t+kdiv ry++m+G++v++++GwD++G++ie+ ++kklg+k+k++++k+g ++++
   CCD25231.1  19 AFWDEIDAFHRSLELTEDKPEFSFFDGPPFATGTPHYGHILASTIKDIVPRYATMTGHHVERRFGWDTHGVPIEHIIDKKLGIKGKDDVYKYGIDNYN 116
                  79************************************************************************************************ PP

  tRNA-synt_1 102 ekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEv..eykdkkdalihvafpladk 197
                  +++r+++++ya+++rk++ rlG+++Dfd++y+T++++++e+++++f++l++k+++yrg +++++st l+t+ls++E+  +ykd++d+++++ f++ ++
   CCD25231.1 117 NECRKIVMTYAADWRKTIGRLGRWIDFDNDYKTMYPSFMESTWWAFKELFEKDQVYRGYRVMPYSTGLTTPLSNFEAqqNYKDVNDPAVTIGFDVIGQ 214
                  *****************************************************************************999****************** PP

  tRNA-synt_1 198 eevklviaTTtPeTllgdtavavnpeldyv.....itkeklilaeallkslvkke.sek.kiledergkeLegkevelpl.......vnrkipiiadd 281
                  e+++lv++TTtP+Tl++++a++vnpe++yv     ++++++il+eal+ksl+kk  +ek ki+e+++g+eL+g+++++++       +++++++i+d 
   CCD25231.1 215 EKTQLVAWTTTPWTLPSNMALCVNPEFEYVkiydeKKDRYYILLEALIKSLYKKPkDEKyKIVEKIKGSELVGLKYKPLFpyfaeeyKETAFRVISDG 312
                  ********************************999999****************964447***************************9********** PP

  tRNA-synt_1 282 yvdkeaGtGvVkiaPahdedDyevgkkynl.....evinildedgtlteeaaefeglkvfdarkkvveelkekglllkaekiehsvpfcerskkpiiy 374
                  yv++++GtG+V++aPa++e+D++v+   ++     +++n+ld+ g++t e+++f+g++v+da+k ++++l+++g+ll a++i+hs+pfc+rs++p++y
   CCD25231.1 313 YVTADSGTGIVHNAPAFGEEDFNVCLAAGIiqpgsTFPNPLDDLGKFTSEVTDFAGVYVKDADKLIIKHLTNTGNLLYATQIRHSYPFCWRSDTPLLY 410
                  **********************************99************************************************************** PP

  tRNA-synt_1 375 rateqWfvrvkeladaalkavekvqfvpks.kekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkalekeakd 471
                  r +++Wfv+vk+++ ++l++v+k ++vp+  kekr+a+w++n++dW++SR+r+WG++ipl+vs++++evv++ ++ el++   +  + +++++++++d
   CCD25231.1 411 RTVPAWFVKVKDIVPQMLESVQKSHWVPNViKEKRFANWIANARDWNVSRNRYWGTPIPLWVSDDFKEVVCVGSIAELEE--LTGVTGITDIHRDIID 506
                  ******************************9**********************************************999..999999********** PP

  tRNA-synt_1 472 kl....kkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmS 565
                  kl    k++kgel+++e+v+D+WF+Sgs+p+++++yp+e+te++++++pa++++eGlD++rgW+++l +l+++l+g++P+k+v+v+g+v++++GrKmS
   CCD25231.1 507 KLtipsKQGKGELRRIEEVFDCWFESGSMPYASQHYPFENTEKFNERVPANFISEGLDQTRGWFYTLSVLGTHLFGKVPYKNVIVSGIVLAADGRKMS 604
                  ************************************************************************************************** PP

  tRNA-synt_1 566 KslgNvidpldvikkygadalRltlilsdvgrdinl 601
                  Ksl+N++dp+ v++kygadalRl+li+s+v+++++l
   CCD25231.1 605 KSLKNYPDPNIVLEKYGADALRLYLINSPVLKAESL 640
                  ******************************999876 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.062
  tRNA-synt_1 362 vpfcerskkpiiyrateqWfvrvkeladaalkavek 397
                  + +++  k  ++y+a+  W v  k+l+++a k+ + 
   CCD25231.1 882 IITTDEAKYNVEYKAVADWPVLGKKLKKDAKKVKDA 917
                  4456778899******************99987764 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0     2e-29   7.3e-26       1     150 [.     693     851 ..     693     853 .. 0.92
   2 ?   -2.5   0.0       1.2   4.5e+03     125     147 ..     987    1009 ..     962    1014 .. 0.71

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 2e-29
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk.raaqevllevletllrllaPfmPfitEelwqr...... 91 
                  drwil+ l++lv+ +++ +  y++++++ +l +f +++l +wy++++++rl++e++ ++  +a + l+e+l t++r +aPf+Pf+++ ++ +      
   CCD25231.1 693 DRWILASLQSLVQFIHQEMGLYKLYTVVPKLLNF-IDELTNWYIRFNRRRLKGENGVEDcLKALNSLFEALFTFVRAMAPFTPFLSDSIYMKlkafip 789
                  9********************************6.9******************9999976699**************************88999*** PP

  Anticodon_1  92 ...eeeelgkkesimlaewpe.kaeel.ekeleeeevellkeivkairklrselkikpsselkv 150
                      ++  ++++s++  ++pe  +e l ++++ e++v+++++++++ r++r++++i+ +++lk 
   CCD25231.1 790 advLSQFSKDDRSVHFLSYPEvREE-LfDEAI-EKAVARMQSVIELGRNIREKKTISLKTPLKT 851
                  99855444888**********5555.558888.99*************************9876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.2
  Anticodon_1  125 llkeivkairklrselkikpsse 147 
                   l++e+v+ i+klr++ +++   +
   CCD25231.1  987 LARELVNRIQKLRKKCGLNATDD 1009
                   45678999999999988887665 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.4   6.3e-09   2.3e-05       8      66 ..      47     106 ..      45     188 .. 0.87
   2 !   13.5   0.1   6.1e-06     0.022     155     240 ..     385     475 ..     374     495 .. 0.79
   3 !   20.3   0.0   5.3e-08   0.00019     312     378 ..     587     654 ..     551     662 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 6.3e-09
                   B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHH.HHTTS-HHHH CS
  tRNA-synt_1g   8 pYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkA.ekegvtpeel 66 
                   p+a+g++H Gh+l   + Di+ Ry  ++g++v    g D+hG+pie    +k g++ ++ 
    CCD25231.1  47 PFATGTPHYGHILASTIKDIVPRYATMTGHHVERRFGWDTHGVPIEHIIdKKLGIKGKDD 106
                   799**********99999***************************965414556666554 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 6.1e-06
                   TSSB-E..................EEE.EEEEEE-GGGGHHHHHHHH.HH-TTSHHHHHHHH.HHHHT----EE-ESS-SSS-EET....TE CS
  tRNA-synt_1g 155 cgkkleptelin..pksaisgskpevketehlffklskfekklkewieeeekeleenvkkivkewlkegLkdlaisrdldwGipvP....ga 240
                    g+ l  t++    p +  s++   +++   +f k++++  ++ e +++++   +   +k   +w+ +  +d+++sr+  wG p+P    ++
    CCD25231.1 385 TGNLLYATQIRHsyPFCWRSDTPLLYRTVPAWFVKVKDIVPQMLESVQKSHWVPNVIKEKRFANWIAN-ARDWNVSRNRYWGTPIPlwvsDD 475
                   5666666666542266888888889999999****************7777555555667789***99.9****************776544 PP

  == domain 3  score: 20.3 bits;  conditional E-value: 5.3e-08
                   -S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHH.HS-TTS-EEE-HHHHHHHHHHH CS
  tRNA-synt_1g 312 pkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaa.eapekkDldfswedfvervNse 378
                    + +v+   l  +g+K+SkS ++  +++ +le++ ad+lR yl+     + + l+f+++ + e v + 
    CCD25231.1 587 KNVIVSGIVLAADGRKMSKSLKNYPDPNIVLEKYGADALRLYLINsPVLKAESLKFKEDGVKEVVSKV 654
                   3444444567889*******************************934455566788888777766655 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   3.6e-07    0.0013     246     299 ..     595     650 ..     578     652 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 3.6e-07
                   -EEETTBE--TTTT---BHHHHHTTS-HHHHHHHHHSS-T..TS-EEE-HHHHHHH CS
  tRNA-synt_1e 246 hlkiegekmsksLknfitikdvlkkfdprqlRllllsahy..rsqldfkeelleea 299
                   +l  +g+kmsksLkn+   + vl+k+ + +lRl+l++      + l+fke+ ++e+
    CCD25231.1 595 VLAADGRKMSKSLKNYPDPNIVLEKYGADALRLYLINSPVlkAESLKFKEDGVKEV 650
                   56789******************************987542256899999988876 PP

>> DUF2766  Protein of unknown function (DUF2766)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00043       1.5      32      71 ..     787     826 ..     778     833 .. 0.90
   2 ?    0.6   0.2      0.15   5.5e+02       8      30 ..    1013    1035 ..    1007    1044 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00043
     DUF2766  32 iaPaevrekmsaqlksidfskhPaaadpvtkraiekaial 71 
                   Pa+v  + s+  +s+ f   P  ++++   aieka+a 
  CCD25231.1 787 FIPADVLSQFSKDDRSVHFLSYPEVREELFDEAIEKAVAR 826
                 67************************************95 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.15
     DUF2766    8 eqelvsdlvacqlvikqildvie 30  
                  e elv d +    v+kq ld++ 
  CCD25231.1 1013 EYELVKDTIDFEDVVKQHLDMVS 1035
                  6799****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1071 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.26s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 7105.17
//
Query:       CCD25232.1  [L=653]
Description: hypothetical protein NDAI_0E04150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     4e-255  847.6   8.2   4.6e-255  847.5   8.2    1.0  1  HSP70           Hsp70 protein
    1.1e-15   57.4   0.0    2.1e-14   53.1   0.0    2.1  2  MreB_Mbl        MreB/Mbl protein
     0.0028   17.4   0.0     0.0068   16.2   0.0    1.7  2  FGGY_C          FGGY family of carbohydrate kinases, C-termin
  ------ inclusion threshold ------
       0.03   13.6   0.2       0.11   11.8   0.0    2.2  2  Hydantoinase_A  Hydantoinase/oxoprolinase
      0.051   12.6   1.8       0.87    8.5   0.2    2.7  3  DDR             Diol dehydratase reactivase ATPase-like domai
        4.8    6.8  15.9        1.7    8.3   0.1    2.3  2  GARP            Glutamic acid/alanine-rich protein of Trypano


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  847.5   8.2  1.5e-258  4.6e-255       1     598 [.       4     609 ..       4     610 .. 0.98

  Alignments for each domain:
  == domain 1  score: 847.5 bits;  conditional E-value: 1.5e-258
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 +iGiDLGtt+s+va + ++++e+ian++gnrttPs+vaFt++erl+G+aAk+qa+ np+nt+f++KrliGrk+s+ ev ++ik++p+kv +   gk+v+
  CCD25232.1   4 AIGIDLGTTYSCVAHFANDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQAAINPSNTIFDAKRLIGRKLSEHEVVEDIKHFPFKVIEI-AGKPVI 101
                 59****************************************************************************************99.9***** PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSS.SCEEEEEEEEXS CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkd.kernvlvyDlGg 195
                 +ve++ge  +ftpe+is+mvL+k+ketae+ylg+k++dav+tvPaYfnd+qRqatkdAg iAG+nvlRi+NepTAaa+aYGldkk   e+ vl++DlGg
  CCD25232.1 102 QVEYKGEtkTFTPEEISSMVLSKMKETAENYLGTKINDAVVTVPAYFNDSQRQATKDAGVIAGMNVLRIINEPTAAAIAYGLDKKGrGEHDVLIFDLGG 200
                 ******999***************************************************************************99789********** PP

                 SXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEE CS
       HSP70 196 gtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlsekls 294
                 gtfdvS+l++++GvfevkaTagDthlGGedfD++lv hl++efk+k++ dl+++++al+rl++aae+aK++LSs  ++++++ei++++e g+d+ ++++
  CCD25232.1 201 GTFDVSLLSIDEGVFEVKATAGDTHLGGEDFDNRLVTHLANEFKRKTRKDLTSNQRALRRLRTAAERAKRALSS--SSQTSVEIDSLFE-GQDFYTSIT 296
                 **************************************************************************..677778899****.********* PP

                 HHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTC..GCSHCCEEEEBE CS
       HSP70 295 RakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpDeavaiGAAvqagvlsge..eevkdllllDvt 390
                 Ra+feel++dl++ tl+pvek+l+dakl+k++i+e+vlvGGstRiPk+q+l+ ++f+ kep++++npDeava+GAAvqa++l+g+  ++++dllllDv 
  CCD25232.1 297 RARFEELCADLFRSTLDPVEKVLRDAKLDKNQIHELVLVGGSTRIPKIQKLITDFFNgKEPNRSINPDEAVAYGAAVQAAILTGDtsSKTQDLLLLDVA 395
                 ********************************************************99**************************977899********* PP

                 SS-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTC CS
       HSP70 391 pLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketg 489
                 pLs+giet+gg+mtkli+rn tiptkks++fst+adnq+ v i+v++ger+ ++dn+llg+fel+gippaprG pqieVtfdidanGil+vsa +k+tg
  CCD25232.1 396 PLSMGIETAGGIMTKLIPRNSTIPTKKSETFSTYADNQPGVLIQVYEGERTKTRDNNLLGKFELSGIPPAPRGIPQIEVTFDIDANGILNVSAIEKGTG 494
                 *************************************************************************************************** PP

                 CEEEEEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..GGGSTHHHH....HHHHHHHHHHHCHTTSSCHHHHHH CS
       HSP70 490 keeeitieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee..aekvseaek....ekvesaieeLkeeleeeekeeiea 581
                 k+++iti++++g ls+++ie+mv++ae++++ed+k++e+++akn++e+++ +l+++ +e+  +ekv e+++    ++ +++i++L+++ +++++ee+++
  CCD25232.1 495 KSNKITITNDKGrLSKDDIERMVSEAEKYRAEDEKEAERVQAKNQLETYAFQLKNTASEAafKEKVGEEDTnaltSAAQETINWLDAS-QAASTEEYQD 592
                 ************9*********************************************999999999999977778888899999998.7899****** PP

                 HHHHHHHHHHHHHHHHH CS
       HSP70 582 kteelkkvvekiaekly 598
                 k++el+ ++++i++k y
  CCD25232.1 593 KQKELEGTANPIMTKFY 609
                 ************99876 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.025        73       2      23 ..       3      26 ..       2      74 .. 0.68
   2 !   53.1   0.0   7.1e-18   2.1e-14      78     316 ..     122     372 ..     112     379 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.025
                SEEEEEE-SSEEEE..EETTTEEE CS
    MreB_Mbl  2 kdlgiDLGtantlv..yvkgkgiv 23
                k +giDLGt+   v  +++++  +
  CCD25232.1  3 KAIGIDLGTTYSCVahFANDRVEI 26
                789*******99885555565433 PP

  == domain 2  score: 53.1 bits;  conditional E-value: 7.1e-18
                 HHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTS..SS-EEEEEE-SS-EEEEEEETTEEE.....E CS
    MreB_Mbl  78 lkyfikkvkkkkslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpvee..psgnmvvdiGggttevavislggiv.....t 169
                 l ++ + +++   ++ +  v++vP   ++ +r+A k+a   aG +   +i+ep aAAi  gl+ +    +  ++ d+Gggt +v+++s+ + v     t
  CCD25232.1 122 LSKMKETAENYLGTKINDAVVTVPAYFNDSQRQATKDAGVIAGMNVLRIINEPTAAAIAYGLDKKGrgEHDVLIFDLGGGTFDVSLLSIDEGVfevkaT 220
                 3344444444555677889*******************************************97641145569****************8765221112 PP

                 EEEES-SHHHHHHHHHHHHHHHHS......EE--HHHHHHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH CS
    MreB_Mbl 170 sksvrvaGdeldeaiikyirkkyn......lliGertaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevL 261
                 +   +++G+++d+ +++++ ++++      l+  +r  ++++++   a+   +++ +++++   l +g    ++++ ++ +e  ++ +++ ++ v++vL
  CCD25232.1 221 AGDTHLGGEDFDNRLVTHLANEFKrktrkdLTSNQRALRRLRTAAERAKRALSSSsQTSVEIDSLFEGQDFYTSITRARFEELCADLFRSTLDPVEKVL 319
                 335789************998886222222445555666777777666665555469999999************************************ PP

                 HTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-.EEE-SSTTTHHHHHHH CS
    MreB_Mbl 262 ektppeLaadivdrgivltGGgallkgldkllseetglp.vkvaedpltcvakGtg 316
                 ++++  L ++ ++  +vl+GG++ +  ++kl+++ ++ +  + + +p ++va G++
  CCD25232.1 320 RDAK--LDKNQIH-ELVLVGGSTRIPKIQKLITDFFNGKePNRSINPDEAVAYGAA 372
                 *976..5555554.47888**************99875415677788888888876 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.3e-06    0.0068     125     196 ..     297     377 ..     260     379 .. 0.75
   2 ?   -3.9   0.1       3.2   9.6e+03      43      68 ..     568     594 ..     565     602 .. 0.63

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.3e-06
      FGGY_C 125 rAaleavalql.railealekd......sgkpldrlavdGGgskndllmqllAdilg..vpVerpktaeatalGaAilAav 196
                 rA +e ++  l r  l+  ek       ++ ++ +l+++GG ++ + +++l+ d ++   p +   ++ea+a GaA+ Aa+
  CCD25232.1 297 RARFEELCADLfRSTLDPVEKVlrdaklDKNQIHELVLVGGSTRIPKIQKLITDFFNgkEPNRSINPDEAVAYGAAVQAAI 377
                 44444444332133333332225555557999**************************999777788************96 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.2
      FGGY_C  43 siavagslvawlldnl.glreeirdag 68 
                 ++++a+++++wl     +  ee++d++
  CCD25232.1 568 LTSAAQETINWLDASQaASTEEYQDKQ 594
                 568888999999887633334444433 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.97   2.9e+03      80     104 ..       3      27 ..       2      37 .. 0.83
   2 ?   11.8   0.0   3.6e-05      0.11      55     103 ..     167     215 ..     115     277 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.97
  Hydantoinase_A  80 kvItfDmGGTstDvslikdgevevs 104
                     k+I++D+G T   v+++++ +ve+ 
      CCD25232.1   3 KAIGIDLGTTYSCVAHFANDRVEII 27 
                     789*******999999999998875 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.6e-05
  Hydantoinase_A  55 vetilSGPaaGvvgaaatsklagekkvItfDmGGTstDvslikdgevev 103
                     v  i+  P a ++++    k  ge++v+ fD+GG ++Dvsl++  e  +
      CCD25232.1 167 VLRIINEPTAAAIAYGLDKKGRGEHDVLIFDLGGGTFDVSLLSIDEGVF 215
                     5566777888888887778999******************876544433 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.42   1.3e+03     178     222 ..      76     124 ..      70     143 .. 0.63
   2 ?    8.5   0.2   0.00029      0.87     132     166 ..     190     223 ..     152     227 .. 0.83
   3 ?    2.2   0.0     0.024        71     273     297 ..     327     351 ..     311     356 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.42
         DDR 178 ledrelaEdiKkyplakve..slfhireE..dgtvqFfdkpldpevfar 222
                 l+++e+ EdiK++p   +e  +  +i+ E    t +F  +++++ v+++
  CCD25232.1  76 LSEHEVVEDIKHFPFKVIEiaGKPVIQVEykGETKTFTPEEISSMVLSK 124
                 6788999999999976555213333333321344555556666655555 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00029
         DDR 132 ekplailDlGaGstDaalieeegevkavhlAGAGe 166
                 e+++ i DlG+G+ D +l++ ++ v  v  A AG+
  CCD25232.1 190 EHDVLIFDLGGGTFDVSLLSIDEGVFEVK-ATAGD 223
                 67899***************999998864.77776 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.024
         DDR 273 rdidfvvlvGgsalDfEipelvtda 297
                  +i+ +vlvGgs+    i++l+td 
  CCD25232.1 327 NQIHELVLVGGSTRIPKIQKLITDF 351
                 68999*****************986 PP

>> GARP  Glutamic acid/alanine-rich protein of Trypanosoma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.1   0.00056       1.7      57      98 ..     245     286 ..     233     296 .. 0.74
   2 ?    0.2  11.5      0.17     5e+02      27     116 ..     512     601 ..     507     607 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00056
        GARP  57 teakelvkrakeaaaeateAaeaAetaasevegeaanlkava 98 
                 ++  +  ++ + a+ +  +Aae+A+ a+s++++ + +++++ 
  CCD25232.1 245 RKTRKDLTSNQRALRRLRTAAERAKRALSSSSQTSVEIDSLF 286
                 345566777788888888888888888888888888888765 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.17
        GARP  27 eaaaaaskaskAkarseeaverAesaaendteakelvkrakeaaaeateAaeaAetaasevegeaanlkavaeeylesldksLkslaesa 116
                  +++++s+a+k++a+ e+ +er++++++ +t a +l + a eaa +  +  e+  +  s++++  + l+a++++ +e+++++ k+l+ +a
  CCD25232.1 512 DIERMVSEAEKYRAEDEKEAERVQAKNQLETYAFQLKNTASEAAFKEKVGEEDTNALTSAAQETINWLDASQAASTEEYQDKQKELEGTA 601
                 578899**************************************9999999999999999999999999999999999988888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1447  (0.0807072); expected 358.6 (0.02)
Passed bias filter:                      731  (0.0407719); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 4411.31
//
Query:       CCD25233.1  [L=201]
Description: hypothetical protein NDAI_0E04160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-56  190.8   2.1    1.3e-56  190.6   2.1    1.1  1  Ribosomal_S8e  Ribosomal protein S8e


Domain annotation for each model (and alignments):
>> Ribosomal_S8e  Ribosomal protein S8e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.6   2.1   7.1e-61   1.3e-56       1     137 []       1     185 [.       1     185 [. 1.00

  Alignments for each domain:
  == domain 1  score: 190.6 bits;  conditional E-value: 7.1e-61
                    XXXBXXCCCSEESSTEEXXXSSXXXCCSBXXXXXXXEESSHEEEEEEETTCEEEEEEESESEEEEEETTTTEEEEEEEEEEECSSSTCHHHHTTC- CS
  Ribosomal_S8e   1 mgisrdskhkrkltGgkakllrkkrkielgrkekatklgaervkvvrvrgGkrkkralrlkkanvthpeekvtkklkIlgVkknpsnneyvrlgvl 96 
                    mgisrds+hkr++tG+k++++rkkrk+elgr++++tk+g +r+++vr+rgG++k+ralr++++n+++++e+v+kk++I gV+++psnne+vr+++l
     CCD25233.1   1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGGKRIHTVRIRGGNKKYRALRIETGNFSWASEGVAKKTRIAGVVYHPSNNELVRTNTL 96 
                    99********************************************************************************************** PP

                    -TTEEEEEESHH................................................HHHHHHTTEEEEEEESEHHHHSSEEEEEE CS
  Ribosomal_S8e  97 tKgaiievdvse................................................LgevtqsgkvvAqvtsrPgqdGcvnavlL 137
                    tK ai+++d+++                                                +++++++g+++A+++srPgq+G++++++L
     CCD25233.1  97 TKAAIVQIDATPfrqwyeghygqtlgkkkagkgteeeivktknsekkwasraasakieasVEHQFSAGRLYACISSRPGQSGRCDGYIL 185
                    ****************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       582  (0.0324614); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1436.20
//
Query:       CCD25234.1  [L=257]
Description: hypothetical protein NDAI_0E04170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      7e-22   77.6   0.1    1.2e-21   76.8   0.1    1.4  1  UQ_con         Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.034   14.2   0.5      0.051   13.6   0.5    1.3  1  DUF4484        Domain of unknown function (DUF4484)
          1    9.2   9.0        1.1    9.1   5.6    2.1  2  Orthopox_B11R  Orthopoxvirus B11R protein


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.1   2.1e-25   1.2e-21       1     112 [.       9     119 ..       9     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 2.1e-25
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT...--TTSH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeek...Wspalt 96 
                 rl+ke+k+l++++p+ i a + +d n+ ew+ +i+gp+d+pY +g ++ +l+fp+dYP+kpP ++++t+  +   +++ ++cl++    +   W+p+++
  CCD25234.1   9 RLTKEYKTLTETPPPYILARPNED-NILEWHYIITGPPDSPYSEGQYHGTLTFPTDYPYKPPAIRMITP--NGRFKENTRLCLSMSD-YHpdlWNPSWS 103
                 799********************8.****************************************9984..78899********966.33467****** PP

                 HHHHHHHHHHHHHS-- CS
      UQ_con  97 lesvllsiqsLlaepn 112
                 ++++l+ ++s+++  +
  CCD25234.1 104 VSTILTGLLSFMTGDE 119
                 **********995443 PP

>> DUF4484  Domain of unknown function (DUF4484)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.5   8.5e-06     0.051      66     133 ..     120     211 ..      80     240 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 8.5e-06
     DUF4484  66 ereeaeeeeeeeearkelaiiaYFhrLTtqilsvladivdssdee.keddeddeeelde.eeedeeeee........................e 133
                 +++ +  ++++++ +  ++ +a+ +r  t++l v  d+v+++ +e k+++e+  +e+++ + + +++++                        +
  CCD25234.1 120 ATTGSIVTTDSQKRQFAMNSVAFNNRQNTRFLMVFPDVVQKNWSEiKRREEEILKEKENgN-N-KNAKHsndpileaskekvitleeimdpedR 211
                 3334444556677888999********************9987774333333333333321.1.111112345555555555555555554432 PP

>> Orthopox_B11R  Orthopoxvirus B11R protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   5.6   0.00018       1.1      12      35 ..     163     186 ..     156     196 .. 0.81
   2 ?    0.9   0.1     0.065   3.9e+02       4      39 ..     199     236 ..     196     248 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00018
  Orthopox_B11R  12 neidrekeeilknveiennknink 35 
                     ei r  eeilk+ e  nnkn   
     CCD25234.1 163 SEIKRREEEILKEKENGNNKNAKH 186
                    79*************999999753 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.065
  Orthopox_B11R   4 vtnvediineidrek.eeilknv.eiennkninknhps 39 
                    v  +e+i++  dr + e+ l  + e + nk++ k+ p 
     CCD25234.1 199 VITLEEIMDPEDRIRaEQALAALqEEQKNKQLHKDTPH 236
                    66789999999997624566665245578999998774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1443  (0.0804841); expected 358.6 (0.02)
Passed bias filter:                      768  (0.0428356); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1802.33
//
Query:       CCD25235.1  [L=827]
Description: hypothetical protein NDAI_0E04180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-54  183.1  26.0    6.4e-54  183.1  26.0    3.3  2  UCH       Ubiquitin carboxyl-terminal hydrolase
    9.8e-21   74.7   3.7    9.8e-21   74.7   3.7    3.7  3  UCH_1     Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
        0.3   11.5   3.4        1.1    9.6   3.4    2.1  1  Csm1_N    Csm1 N-terminal domain
        1.5    9.6   4.7       0.54   11.0   0.6    2.3  2  MBD_C     C-terminal domain of methyl-CpG binding protein 2 a


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.4      0.72   3.2e+03      94     138 ..      70     113 ..      28     140 .. 0.60
   2 !  183.1  26.0   1.4e-57   6.4e-54       1     257 []     155     735 ..     155     735 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.72
                 SSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  94 gykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdl 138
                   +q D+ E +++l  q +   + + + ++++k++   +s+ ++ 
  CCD25235.1  70 PDEQDDTDESVNQLSFQTSTTNKVK-HLQQMQKQHLDANSNNETT 113
                 5566666666666655554443332.1122222222222333333 PP

  == domain 2  score: 183.1 bits;  conditional E-value: 1.4e-57
                 -EES-SSSTHHHHHHHHHHHTSHHHH.HHHHTCHHCCSSTCCCCC...................................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx...................................................... RF
         UCH   1 tGlsNlGntCymnsvlQcLfsipelr.dyllsleevkkesrnkke...................................................... 44 
                 +G++N+GntCy+nsvlQcL++++ ++ ++l+++ ++++ +    e                                                      
  CCD25235.1 155 FGYENFGNTCYCNSVLQCLYHLDDFKlNLLKTSLRSSSLP----Ecsfledsprmrklempgnipkhfteasfvdnskitctcknnnnsgkirknsdek 249
                 69************************99998854444433....13467899*********************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
         UCH  45 ................................................................................................... 44 
                                                                                                                    
  CCD25235.1 250 iggktktmfrsfikktdnnpnnsnnndtntkkvpctvhkninamkpiqnsapnltthtnftkldtriqhtisetptgmtqqqrkpslvqglslnvrsnt 348
                 *************************************************************************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
         UCH  45 ................................................................................................... 44 
                                                                                                                    
  CCD25235.1 349 nnvilgrpidkkklsnsfpsssptttknpssnnafsnnlekklemaetlpdiveismsgnfktdifqenqnlqtngqqvnqcsppryltieekkknali 447
                 *************************************************************************************************** PP

                 ..........-.TT.TTS.TTHHHHHHHHHHHHHH..SH-CCEE--HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCT CS
                 ..........xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  45 ..........lnesnplgkkgelakalkdlfkell..kskskavsPkklkktlsklaksfsgykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrn 131
                           l+++n+++++ +l++ lkd+f+ ++  k  +  vsP+++++ l+k++  f +++ qDa+Ef++fl++ql+++++        + +  + 
  CCD25235.1 448 ngpilnidhlLDNNNNKTRDSNLYNGLKDIFECIIenKFLTGVVSPTEFVQLLKKENVLFDTMMHQDAHEFFNFLINQLSDYIQT-------DCANPQD 539
                 999998877547677777777***********9999877899*******************************************.......6778899 PP

                 TSHHHHHH-EEEEE.................................................................EEEEEEB-SEEEEEEESEEE CS
                 xxxxxxxxxxxxxx.................................................................xxxxxxxxxxxxxxxxxxxx RF
         UCH 132 dslitdlfegqlks.................................................................klklkrlPeiLiihlkRfsy 165
                 d++i++ f+g l++                                                                 ++ lk+lP++L +hlkRf+y
  CCD25235.1 540 DNFINESFQGILTNrikclscdnvtsrdepfldfpievqehkeftdistilksyhqkemlgghnkfycsqcctlqeaqrTVGLKKLPNTLALHLKRFKY 638
                 9************************************************************************************************** PP

                 TEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-BEEEEEEEEEES.CTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCCCTT.........C CS
                 xxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........x RF
         UCH 166 nss...ksKlntkvefpeeldlssylaeekkkkteekkkYeLiavvvHsG.slssGHYvayiknekngkWykydDetvkevkeeeevls.........s 251
                 +++   ++Kl +k+ +p+el++ss ++++ +kk      Y+L ++vvH+G s+++GHYva++k +++  W+ +dDet + ++ee evls         +
  CCD25235.1 639 SEEhftNIKLFNKIVYPLELNVSSSFTSSISKK------YKLQGIVVHMGsSPQQGHYVAICK-TDKYGWLLFDDETASWINEE-EVLSfigdeksqnT 729
                 9999**********************9887777......************************.66777*************98.6666777777778* PP

                 EEEEEE CS
                 xxxxxx RF
         UCH 252 ayiLfY 257
                 ay+LfY
  CCD25235.1 730 AYVLFY 735
                 ****** PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   3.2       0.2   9.1e+02     105     184 ..      58     138 ..      20     143 .. 0.56
   2 ?   -2.0  23.0      0.47   2.1e+03       2     199 ..     156     403 ..     156     441 .. 0.55
   3 !   74.7   3.7   2.2e-24   9.8e-21      38     317 ..     441     706 ..     434     708 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.2
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxx....xxxxxxxxxxxxxxxxx RF
       UCH_1 105 fnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvl...dlkyPk....psnekkeakvtfasilk 184
                  n++l++qle+   e+ +    ++++++ql  ++++tt++ ++ ++ ++++ +  ++      y      +s +++  k +f+sil 
  CCD25235.1  58 ENQCLTQQLEERPDEQDD----TDESVNQLS-FQTSTTNKVKHLQQMQKQHLDANSNnetTFHY-DvsneESANEDMDKNKFSSILS 138
                 577888888877666543....444455543.66666666664444443333333332112233.1222244446666677888876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.47
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplr.nlalshlakeckkehcLlcElgflfdmldkak..glncqasnFlrals...sipeasalglileeeeetekss 94 
                 G En  +++Y+Ns+LQ+ly++  +  nl++ +l ++   e + l E    ++ l+      ++  +  F+   +   + +++++ g i+++       s
  CCD25235.1 156 GYENFGNTCYCNSVLQCLYHLDDFKlNLLKTSLRSSSLPECSFL-EDSPRMRKLEMPGniPKHFTEASFVDNSKitcTCKNNNNSGKIRKN-------S 246
                 6688899******************9999999966666663333.3333332222222123344444454444433333344444444222.......2 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
       UCH_1  95 aislssliqsfnrflldqlekelketkkns..........................seeesaieqllgtkaettirclkCgseksrksstlvldlkyP. 166
                 ++++   ++++ r +++++ ++ +++++n                            +++++++  l t++++ti+ +  g ++++++ +lv  l+   
  CCD25235.1 247 DEKIGGKTKTMFRSFIKKTDNNPNNSNNNDtntkkvpctvhkninamkpiqnsapnLTTHTNFT-KLDTRIQHTISETPTGMTQQQRKPSLVQGLSLNv 344
                 2223333334444444444433333333334555555555555555555555544444444455.4557777777777777777666666666554422 PP

                 x.....................xxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 167 k.....................psne.......kkeakvtfasilksslerekttrawCek 199
                 +                     p  +       +++++  f++ l+++le  +t + ++e+
  CCD25235.1 345 RsntnnvilgrpidkkklsnsfP--SssptttkNPSSNNAFSNNLEKKLEMAETLPDIVEI 403
                 22223333333333344433330..033444456666777888888877777766666665 PP

  == domain 3  score: 74.7 bits;  conditional E-value: 2.2e-24
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxx....xxxxxxxxxxxxxxx RF
       UCH_1  38 kkehcLlcElgflfdmldkakglncqasnFlrals........sipeasalglileeeeete.....kssaislssliqs....fnrflldqlekelke 119
                 kk++ L+    +++d l + ++++ + sn+ + l+        +   +   g++       e     k++++ + +++ +    f +fl++ql++  ++
  CCD25235.1 441 KKKNALINGPILNIDHLLDNNNNKTRDSNLYNGLKdifeciieN---KFLTGVVSPT----EfvqllKKENVLFDTMMHQdaheFFNFLINQLSDYIQT 532
                 56666666666777777777778888888888888444432220...2223333222....12222244455555555423445********9998777 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 120 tkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsnekkeakvtfasilkssler...ekttrawCekCkryqpteqrktvknl 215
                     + ++++ i++ ++  ++++i+cl+C + +sr++ +l + +      + ++++ +++++ilks  ++     +++  C++C + q  +++  +k+l
  CCD25235.1 533 D-CANPQDDNFINESFQGILTNRIKCLSCDNVTSRDEPFLDFPIEV----Q-EHKEFTDISTILKSYHQKemlGGHNKFYCSQCCTLQEAQRTVGLKKL 625
                 5.557899999******************************97733....3.455669**********994444699********************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 216 PpvLalnakleeeeelelwktknwlpleiklsldedknleeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWyl 314
                 P+ Lal++k+++ +e ++ +  + +++ ++            l+ + +++ +++ +k+Y+Lq++vvh+g+s ++gh+v+++k  +k          W+l
  CCD25235.1 626 PNTLALHLKRFKYSEEHFTNI-KLFNKIVYP-----------LELNVSSSFTSSISKKYKLQGIVVHMGSSPQQGHYVAICKT-DK--------YGWLL 703
                 *********995543333333.333333333...........22222233567899*************9999*********5.44........38*** PP

                 xxx RF
       UCH_1 315 FND 317
                 F+D
  CCD25235.1 704 FDD 706
                 **9 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.4   0.00025       1.1      19      65 ..      49      95 ..      44     103 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00025
      Csm1_N 19 dllvsklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleerrk 65
                + +v   v+EN+ L+q+le + +e     e +++l  + + +++ ++
  CCD25235.1 49 ESAVDTTVEENQCLTQQLEERPDEQDDTDESVNQLSFQTSTTNKVKH 95
                5689999*********************9999999998888776655 PP

>> MBD_C  C-terminal domain of methyl-CpG binding protein 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.2       1.6   7.2e+03      26      54 ..      79     107 ..      69     114 .. 0.70
   2 ?   11.0   0.6   0.00012      0.54       6      61 ..     288     344 ..     285     352 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 1.6
       MBD_C  26 llqslasalhtssspitGqkkskkalekn 54 
                  +++l+ + +t ++  ++q+++k+ l++n
  CCD25235.1  79 SVNQLSFQTSTTNKVKHLQQMQKQHLDAN 107
                 44445556666667888888888888877 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00012
       MBD_C   6 stldLpkslkpvgpgitdetllqslasal.htssspitGqkkskkaleknpgvtlnv 61 
                 ++++  k++++++p+ t+ t+ ++l + + ht s+++tG ++++ +     g+ lnv
  CCD25235.1 288 KNINAMKPIQNSAPNLTTHTNFTKLDTRIqHTISETPTGMTQQQRKPSLVQGLSLNV 344
                 5778889**********************99999999*9999988777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1793  (0.100006); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.47
# Mc/sec: 5298.17
//
Query:       CCD25236.1  [L=1237]
Description: hypothetical protein NDAI_0E04190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.9e-22   78.6   0.9    3.9e-22   78.6   0.9    2.3  2  Fungal_trans  Fungal specific transcription factor domain
    2.1e-09   37.3   9.8    3.6e-09   36.6   9.8    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.016   15.3   0.0      0.074   13.1   0.0    2.0  2  Daxx          Daxx N-terminal Rassf1C-interacting domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.9   6.5e-26   3.9e-22       2     263 ..     421     671 ..     420     673 .. 0.85
   2 ?   -5.4   4.0       2.7   1.6e+04     179     238 ..    1070    1127 ..    1059    1162 .. 0.56

  Alignments for each domain:
  == domain 1  score: 78.6 bits;  conditional E-value: 6.5e-26
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                   ++f + + p fpilh +s  + +         ++s+ll+++++ +++l+ +++t + +           a+ +++ ++  +++   ++s++i+q+Ll
    CCD25236.1 421 SIFVKEYLPYFPILHTNSAIELY---------SQSQLLFWTVMLTACLSDPEPTMYIKL----------ASLIKQLAVE-TCWMRTPRSTQISQALL 497
                   57888888***************.........8888888*****************622..........3344666666.666666666******** PP

  Fungal_trans  99 llelyektssd.ralher.hhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpp.llddsqinlpLPcddddl 192
                   +l+++ +  ++  + + + ++ +a +l+++lgLhr ++  + ++++++ ++ +++r R+w+++F+ + ++ ++lG pp    d+ ++ +    d+ +
    CCD25236.1 498 ILCIWPLPNQKvLDDCSYrFVALAKSLSYQLGLHRGKFIQEFTRTQTSMPNAEKWRTRTWLGIFFAELCWTSILGLPPtSQTDYLLENARLAQDE-E 593
                   **********988888777********************************9**************************65666666665666666.8 PP

  Fungal_trans 193 wesddaseetlvetklsneeksrkiasfllaLkkilsk....iagsllsiekqlqqrdlq...seklswveelerald 263
                   +++dda++ t+ +++ +   k +k +  l++L++++sk    + +s++s+   ++ +d     s  ++ +e+l+r+ld
    CCD25236.1 594 NDADDADGTTDSDQNSNGIDKLPKRFRRLICLANFQSKlcnvMGSSVMSPDGLMEPKDRGgalSILERELERLNRKLD 671
                   9999999999999887888888999999**********9999889999999999999988777777777777777766 PP

  == domain 2  score: -5.4 bits;  conditional E-value: 2.7
  Fungal_trans  179 sqinlpLPcddddlwesddaseetlvetklsneeksrkiasfllaLkkilskiagsllsi 238 
                    ++ n++LP+  + + + +++  ++ +++ ++n  +++++++  + L + +s  ++sll  
    CCD25236.1 1070 NKSNVQLPEKLS-QTNLNSMKSINSNNN-NKNTITNSNNYNNNNNLIQQQSPSSSSLLPF 1127
                    555566665555.444444444444432.3555566666666666555555555555544 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   9.8     6e-13   3.6e-09       1      35 [.      99     136 ..      99     141 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 6e-13
                 SS-HHHHHCT---ST..SSSS.-HHHHHCTHHHCCCCT CS
     Zn_clus   1 haCdnCrkkKvKCda..kkPa.CsnCkklnleCtfyse 35 
                 ++C +Cr++K+KCda  k+P+ Cs+C+k nl C++ ++
  CCD25236.1  99 TSCSHCRQQKIKCDAsqKFPSpCSRCIKMNLFCEIDPD 136
                 69***************88888************5444 PP

>> Daxx  Daxx N-terminal Rassf1C-interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.2e-05     0.074      12      54 ..     161     203 ..     153     214 .. 0.89
   2 ?   -2.5   0.0       0.9   5.4e+03      44      71 ..     703     730 ..     699     738 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
        Daxx  12 lkleneklfeeflelCkketedhPevvtflktrkqkaspefla 54 
                 + + ne lf efl   ++++e+ P++++ l++ ++ +s++ l 
  CCD25236.1 161 YLISNESLFGEFLHQQSMKAENGPNILENLNSMNASSSSQILK 203
                 6689****************************99999988775 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.9
        Daxx  44 rkqkaspeflasvefrnvlgrvlsraqa 71 
                 ++q  +  +++s++++ +l + l + q 
  CCD25236.1 703 QTQYVTDAYFCSTQIVTLLNKLLEKQQL 730
                 5667778899999999999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1237 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1525  (0.0850577); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.86u 0.30s 00:00:01.15 Elapsed: 00:00:00.45
# Mc/sec: 8284.26
//
Query:       CCD25237.1  [L=254]
Description: hypothetical protein NDAI_0E04200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-32  109.6   0.1    1.3e-31  109.1   0.1    1.2  1  AhpC-TSA    AhpC/TSA family
      8e-13   48.0   0.0    1.5e-12   47.1   0.0    1.5  1  1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
    8.1e-10   38.6   0.0    1.5e-09   37.8   0.0    1.4  1  Redoxin     Redoxin


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   0.1   2.2e-35   1.3e-31       1     123 [.      30     182 ..      30     183 .. 0.97

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 2.2e-35
                 TTSB----EEESTTCEEEECHHHTT.SEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H................S CS
    AhpC-TSA   1 vgdkapdfelknadgetvslsdykg.kpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes...............ln 83 
                 ++ +ap+f +  +  ++ ++ +y g ++ vlf +p+d++pvCtte++a+akl +ef++r+v++ig+sv+++esh+k+i++++               + 
  CCD25237.1  30 INSQAPNFDVDSTI-GKLNFYEYLGdSWGVLFSHPADFTPVCTTEMSAFAKLKPEFDKRNVKLIGLSVEDVESHNKWIKDIEdisgefgfnlnsndkFG 127
                 678*******9776.99******888************************************************************************* PP

                 SEEEE-TTSHHHHHTT-EETT...............TTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  84 fpllsDeegkvakaygvlkee...............kglalratfvidkegkiry 123
                 fp++ D ++kv+  y++++ee                 +++r++f+id+++kir 
  CCD25237.1 128 FPIIGDVDKKVSMLYDMVDEEafkklqdgakdkkgiDVATIRSVFIIDPKKKIRL 182
                 *****************************************************95 PP

>> 1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   2.6e-16   1.5e-12       1      37 [.     203     239 ..     203     241 .. 0.96

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 2.6e-16
                 HHHHHHHHT-BB-TTT.TBT-EEE---SSHHHHHHHH CS
  1-cysPrx_C   1 ALQladkhgvatPAnWkpGdkvivpPpateedavkry 37 
                 ALQl+d++gv+tPAnW  +d+ i+pP++++++a++++
  CCD25237.1 203 ALQLSDSKGVVTPANWSVNDDFIIPPKVSDQEAKEKF 239
                 9*********************************987 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   2.4e-13   1.5e-09      31     138 ..      57     191 ..      30     200 .. 0.78

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 2.4e-13
                 EEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH.........................TT-TSEEEE-.TTSHHHHHTT- CS
     Redoxin  31 vvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk.........................eglkfpvlsD.gsaaftkalGl 103
                  v+++ p+ f+P+C++e+ +++kl++++ +++v+ +++++ + +  ++++++                          ++k+ +l+D  + + +k+l  
  CCD25237.1  57 GVLFSHPADFTPVCTTEMSAFAKLKPEFDKRNVKLIGLSVEDVESHNKWIKDiedisgefgfnlnsndkfgfpiigdVDKKVSMLYDmVDEEAFKKLQD 155
                 599************************************************9***************88777777775557777777556677777773 PP

                 TTEEE.GGG...EEE-EEEEEEETTEEEEEEESSSCHT CS
     Redoxin 104 rleedaseg...lrtpryavidedgkvvylevepepet 138
                    ++ ++g     ++++++id ++k++  ++ p +++
  CCD25237.1 156 G--AKDKKGidvATIRSVFIIDPKKKIRLSFNYPGSVG 191
                 3..33333368899999**********99888776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1863.85
//
Query:       CCD25238.1  [L=400]
Description: hypothetical protein NDAI_0E04210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-39  136.1   0.0    1.9e-39  135.6   0.0    1.2  1  TatD_DNase    TatD related DNase
  ------ inclusion threshold ------
      0.044   13.9   0.1       0.28   11.3   0.0    2.2  2  Putative_G5P  Putative Gamma DNA binding protein G5P
      0.068   13.4   0.6       0.15   12.4   0.2    1.8  2  DUF4777       Domain of unknown function (DUF4777)


Domain annotation for each model (and alignments):
>> TatD_DNase  TatD related DNase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.0   3.2e-43   1.9e-39      12     254 ..      48     398 ..      28     399 .. 0.87

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 3.2e-43
                 C.TTTHHHHHHHHHHTTEEEEEEE-SSGGGHHHHHHHHTT.....TTTEEEEE---GGGGGC..................................... CS
  TatD_DNase  12 f.eedreeileraeeagvaavvvvgtsskdskavlelakk....ypnkvyavlGiHPnevde..................................... 68 
                 + e+d +++l+ra +++v+  + +g+s k+s+++++l++k       k+y+++G+HP+ v+e                                     
  CCD25238.1  48 YhESDIKQVLNRAVDRHVKCGLLTGSSWKESNQAIALSHKygegTGVKLYYTIGVHPCCVNEfamedsmtidnpthdekfneslihdilregseknkva 146
                 24789999********************************66666679*******************************************99987776 PP

                 ..C.CCHHHHHHHHHHCCCTSEEEEEEEEEET-CCCCCGHHHHHHHHHHHHHHH...HHTTEEEEEEEES-HHHHHHHH.................... CS
  TatD_DNase  69 ..asedlleelkelanvkhskvvaiGeiGLDyysreestkeaqeevFeeqlrlA...kelklplviHlrkaeedlleil.................... 142
                   +  +l e +++  + +++++ a+GeiGLDy +   s k+ q  +Feeql+l    ++ kl l++H r++ +d++ il                    
  CCD25238.1 147 ikKLRQLYELIERQLQDDKERFRAVGEIGLDYDRFHYSSKQLQLVFFEEQLKLScliRDPKLSLFLHMRNCSNDFVTILkkfidgfedledpfnwkgmf 245
                 633333336666665667889***********88888999************99444566888************************************ PP

                 .......HHCGGCCS....EEEETT--S-HHHHHHHHHT..TEEEEE-GGGGTTTTHHHHHHHHHS-GGGEEE---TTSSEE................. CS
  TatD_DNase 143 .......keaaeaka....kvvlHsfsgsaeeakkflkl..gyyislsglltfknakelrelvkavpldrlLiETDaPyltp................. 211
                           +   +    k+v+Hsf+gs+e + ++l+l  ++yi+++g++ +   +e +e +k++pl+rlL+ETDaP+++                  
  CCD25238.1 246 ntrqaisY--K---FdkdrKFVVHSFTGSEEDMNNILNLssNCYIGMNGCSLK--IEENIECAKKIPLTRLLLETDAPWCEIrrthesfkylkefiipy 337
                 98766422..2...233449*****************6666********9888..6789**************************************** PP

                 ..................CCCTTSE--GGGHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  TatD_DNase 212 ..................kpyrgkrnepanvayvveklaelkaltleelaeitaeNakrlf 254
                                   + + + rnep+++++v+ ++a++k+l+++e+ e+++eN+++++
  CCD25238.1 338 ksvkrdklaklsmeddwpTTMIKSRNEPCTMEQVATVVANVKELNIDEVMEQVWENSCKIY 398
                 ***999999999999966444469**********************************998 PP

>> Putative_G5P  Putative Gamma DNA binding protein G5P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.26   1.6e+03      24      53 ..      21      53 ..       7      70 .. 0.57
   2 ?   11.3   0.0   4.7e-05      0.28      20      74 ..      87     141 ..      80     165 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.26
  Putative_G5P 24 kgevkqkteiGiqlevvdg...fggtntrtqkl 53
                       +++ iG++l ++     ++g++ + +++
    CCD25238.1 21 MTRATKYYDIGLNLTDPMYqgiYNGKKYHESDI 53
                  444556999999999874311244544444444 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.7e-05
  Putative_G5P  20 tyrdkgevkqkteiGiqlevvdgfggtntrtqklriseklvnaglkkqleelkgk 74 
                   +y +  +vk +++iG++   v++f  ++ +t +    +++ n+ l++ + +  + 
    CCD25238.1  87 KYGEGTGVKLYYTIGVHPCCVNEFAMEDSMTIDNPTHDEKFNESLIHDILREGSE 141
                   5667778999************************999999999998887655444 PP

>> DUF4777  Domain of unknown function (DUF4777)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.8     1e+04      43      52 ..      52      61 ..      49      63 .. 0.81
   2 ?   12.4   0.2   2.5e-05      0.15      12      44 ..     358     390 ..     356     393 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.8
     DUF4777 43 vVkntLeaAv 52
                ++k++L  Av
  CCD25238.1 52 DIKQVLNRAV 61
                7999999998 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.5e-05
     DUF4777  12 alkvlnrPaTldEivervaerydlseeelkkvV 44 
                  +k+ n+P T++++++ va++ +l+ +e+ ++V
  CCD25238.1 358 MIKSRNEPCTMEQVATVVANVKELNIDEVMEQV 390
                 57888************************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3101.71
//
Query:       CCD25239.1  [L=473]
Description: hypothetical protein NDAI_0E04220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.1e-68  228.7   0.1    1.7e-67  227.8   0.1    1.4  1  PP2C      Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.8   0.1   9.5e-72   1.7e-67       3     254 ..      24     291 ..      22     295 .. 0.90

  Alignments for each domain:
  == domain 1  score: 227.8 bits;  conditional E-value: 9.5e-72
                 EEEEEECCCCSSHHEEEECCCCTCTT......CCCCCCEEEEEEEEESSSHHHHHHHHHHH.......HHHHHHHHCHTTH........HHHHHHHHHH CS
        PP2C   3 lgaselqgarksmedahislanless......sgkssvsffavfdghggseaakyarehle.......eilksqksfeele........kleqalrksf 80 
                 +g s++qg+r +med+ i + + +        +++++ ++favfdghgg  +a+++re+                   e +         + +al ++f
  CCD25239.1  24 FGISSMQGWRINMEDSDIQELKVQIVntatdlEEEDHLALFAVFDGHGGPNVARFCREKFTsifkrqfA-------SIEQKqkqkhlesMYMDALENTF 115
                 7899**************9998877678899999***************************55555442.......3333334444447999******* PP

                 HHHHHHHHHHHHHHCHCCT-EEEEEEEEEETTE..EEEEEESS-EEEEEETTEEEEECS---STTSHHHHHHHHHTT--EEECCEEETTTBSBSB-EE- CS
        PP2C  81 ladtdeelksskantepsksGstavvalirgtk..lyvAnvGDSravLcrkgnakkeltedHkpsdedEreRIeeaggsvsngegrvngsLavsRalGD 177
                    +d+el s++ n   +ksGsta+v+li+++    ++An+GDSr +++++g+ak  l++dHkp++ +E+ RIe+agg+++  ++rvng+La+sRa+GD
  CCD25239.1 116 FD-LDKELLSRSFN-VNEKSGSTAIVILISKKLnlVICANAGDSRSIISIDGQAK-NLSFDHKPNLINEKLRIEKAGGFIE--MNRVNGNLALSRAIGD 209
                 *9.99999995555.79*************99999*******************9.*************************..**************** PP

                 GGGTCCCC...CCSTSB---EEEEEEE-TT.EEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHT.HHHHHHHHHHHHHHHCCH CS
        PP2C 178 lelkpket...eeqlvsaePdvtsvkltee.defliLacdGlwdvlsdqeavdlvrdelekkk.speevaeelvdeaiargs 254
                 + +k +++    eq+v+++Pd  +++l++  def+iLacdG+wd+ls+q+++dlv++ ++ ++ s+++++ +++d  +++ +
  CCD25239.1 210 FNYKMNDKlskYEQMVTCAPDFITHTLDYAdDEFVILACDGIWDCLSSQDCIDLVHYGIHLGNmSLTDICSKIIDCVLSPDA 291
                 *****999999999***********************************************999*********998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1120  (0.0624686); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3321.53
//
Query:       CCD25240.1  [L=298]
Description: hypothetical protein NDAI_0E04230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2106  (0.117463); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2072.29
//
Query:       CCD25241.1  [L=226]
Description: hypothetical protein NDAI_0E04240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.4e-44  149.2   0.7      8e-44  148.7   0.0    1.6  2  PTH2           Peptidyl-tRNA hydrolase PTH2
  ------ inclusion threshold ------
      0.038   13.8   0.0      0.053   13.3   0.0    1.3  1  ArAE_2         Aromatic acid exporter family member 2
        1.2    7.9   2.4        1.6    7.4   2.4    1.1  1  O-antigen_lig  O-antigen ligase like membrane protein
        3.7    7.3   4.6        1.9    8.2   2.5    1.6  2  DUF3464        Photosynthesis affected mutant 68


Domain annotation for each model (and alignments):
>> PTH2  Peptidyl-tRNA hydrolase PTH2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1         1   4.5e+03      41      57 ..      54      70 ..      31      92 .. 0.55
   2 !  148.7   0.0   1.8e-47     8e-44       2     117 .]     107     226 .]     106     226 .] 0.95

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1
                HHHHHHHHTTTSEEEEE CS
        PTH2 41 ellkeWeeegqkkivlk 57
                +++++  +++ kk +l 
  CCD25241.1 54 TAINNDTKKNIKKNTLT 70
                23333333333333333 PP

  == domain 2  score: 148.7 bits;  conditional E-value: 1.8e-47
                 EEEEEEESSSSS-HHHHHHHHHHHHHHHHHHHHHH.CH....HHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSSSSSTTCEEE CS
        PTH2   2 kmvlvvrkDLkmskGkiaaqcahAavalvkkllkesne....kellkeWeeegqkkivlkveseeeLlelaakakalglpaalirDagrtqiepgtkTv 96 
                 ++ lv+r+DL+m+kGkiaaqc+hAa+++++ +  ++++     ++ ++W ++gq+ki+lk+++ee ++el+aka +lg++a++i+Dagrtqi++g++Tv
  CCD25241.1 107 RLSLVIRQDLNMTKGKIAAQCCHAALSCFRLIAMDPSKnliiPTMTERWLRHGQAKITLKCPNEEIMDELYAKAMSLGVNASVIHDAGRTQIAAGSATV 205
                 6789**************************9999873346665799***************************************************** PP

                 EEEEEEEHHHHHHHHTTSEB- CS
        PTH2  97 laigPapksivdkvtgkLkll 117
                 l+igPap+ ++d++tg+Lkl+
  CCD25241.1 206 LGIGPAPRAVLDQITGDLKLY 226
                 ********************8 PP

>> ArAE_2  Aromatic acid exporter family member 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   1.2e-05     0.053     128     196 ..       4      73 ..       1     103 [. 0.75

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.2e-05
      ArAE_2 128 peliadvlavlsmasqaLktGdpLPeilpapLvkrhlellrkqlklee.seeeadslaealslellrsed 196
                 p+  +++ +++++a+ +L tG  L +++p++L+    e + ++  ++e     +++  +++++++l ++ 
  CCD25241.1   4 PQYNSNIPLIFGIAAASLATGYYLGQLTPSHLSLNKNEKKAQKSLNAEdNTAINNDTKKNIKKNTLTKQS 73 
                 677789999************************9999988887777774333344455556655554433 PP

>> O-antigen_lig  O-antigen ligase like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.4   0.00036       1.6     262     333 ..      26      97 ..       5     107 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00036
  O-antigen_lig 262 aiypyspiyrrkelkekeieiksekkeeeeikneikenykseglk...eavleqyeyandkqfsqellkeevesl 333
                     + +++p+    + +ek+++++ +++++  i+n++k+n k++ l+   e++ ++ ++ +d+++s+e   ee+es 
     CCD25241.1  26 YLGQLTPSHLSLNKNEKKAQKSLNAEDNTAINNDTKKNIKKNTLTkqsEQYDSEVSSDEDEEESEE---EEIEST 97 
                    344446666666667777777777789999999989888888888776555555555555555444...444444 PP

>> DUF3464  Photosynthesis affected mutant 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.4   1.1e+04      68      78 ..       9      19 ..       7      25 .. 0.73
   2 ?    8.2   2.5   0.00042       1.9      16      62 ..      49     113 ..      31     118 .. 0.46

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.4
     DUF3464 68 GiPlalGlatf 78
                 iPl++G+a+ 
  CCD25241.1  9 NIPLIFGIAAA 19
                68888888765 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00042
     DUF3464  16 k.........kpkkkkkskkakkeek.ekakeeekkdkeekeeaa........iPevVskRmirR 62 
                 +           kk+ k+++ +k+++  +++ ++++d+ee+ee++        iP +V+  ++ R
  CCD25241.1  49 NaedntainnDTKKNIKKNTLTKQSEqYDSEVSSDEDEEESEEEEiestslndIPGEVRLSLVIR 113
                 03444444432233333333332222122222222222222222234566777999998777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2161  (0.120531); expected 358.6 (0.02)
Passed bias filter:                      922  (0.0514251); expected 358.6 (0.02)
Passed Vit filter:                       145  (0.00808746); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 1724.19
//
Query:       CCD25242.1  [L=393]
Description: hypothetical protein NDAI_0E04250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-23   81.5   0.3    1.2e-22   80.3   0.3    1.7  1  SEP        SEP domain
    8.5e-17   61.1   0.1    1.5e-16   60.4   0.1    1.4  1  UBX        UBX domain
    1.5e-08   34.3   0.9    2.8e-08   33.4   0.9    1.5  1  UBA_4      UBA-like domain


Domain annotation for each model (and alignments):
>> SEP  SEP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.3   1.9e-26   1.2e-22       1      76 []     206     280 ..     206     280 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 1.9e-26
         SEP   1 ltlwknGFsvdDGelrsyddpenaeflesikkGevPeelekvekgeevevnledrrneeykppkkpkfkaFsGsGr 76 
                 +t+wk+GF+v+DGel++yddp+n  +l+++++G++P +l +ve g+ev+vn++++ +e +kppk+ k   F+G+G+
  CCD25242.1 206 ITFWKEGFQVGDGELYRYDDPANSFYLKELNQGRAPLNLLNVEFGQEVDVNVHKKIDESFKPPKR-KLGGFHGQGQ 280
                 8**************************************************************98.5778****97 PP

>> UBX  UBX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   2.5e-20   1.5e-16       2      80 ..     315     391 ..     314     392 .. 0.95

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 2.5e-20
                 TTSSEEEEEEEETTSTEEEEEEESSSBHHHHHHHHHHHCCCCCTSEEEEETTTTEEGGCCCCSBCCCCTTTSCEEEEEE CS
         UBX   2 eaedatrlqiRlpdGsrlvrrFkksdtlesvyeyVdsklfekeepFqLltsfPrreltksdkktLsdlgllpnstlvle 80 
                 e++ +t++qiR+++G+r v r+ ++d+++++y++V  ++ + +++F+L+  fP ++++++d +t++d+  l ns++v++
  CCD25242.1 315 EPKGDTSVQIRYASGKREVFRCYSTDKVQKLYDHVMENTQDHSRTFTLNHAFPVKPVENLD-STIKDA-DLVNSVVVQR 391
                 56789*******************************************************9.******.9999999986 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.9   4.7e-12   2.8e-08       1      41 [.       7      46 ..       7      48 .. 0.94

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 4.7e-12
       UBA_4  1 deliaqFqaiTGadeekArqlLeannWdLerAislyFdsge 41
                d+ i+qF+a+T+++++ A+q+L+  +  ++ Ai++yF++++
  CCD25242.1  7 DDDIEQFIALTNSSPAIATQFLKEFG-SVNEAINSYFATQT 46
                789**********************5.**********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       679  (0.0378716); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3159.62
//
Query:       CCD25243.1  [L=108]
Description: hypothetical protein NDAI_0E04260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 804.48
//
Query:       CCD25244.1  [L=117]
Description: hypothetical protein NDAI_0E04270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-17   62.2   7.5    3.4e-17   62.2   7.5    1.6  2  Cmc1      Cytochrome c oxidase biogenesis protein Cmc1 like
  ------ inclusion threshold ------
      0.051   13.8   0.7      0.076   13.2   0.7    1.3  1  CBM_14    Chitin binding Peritrophin-A domain
       0.07   13.3   2.6        6.3    7.1   0.3    2.4  2  CHCH      CHCH domain


Domain annotation for each model (and alignments):
>> Cmc1  Cytochrome c oxidase biogenesis protein Cmc1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   7.5   5.7e-21   3.4e-17       1      68 [.       1      69 [.       1      70 [. 0.97
   2 ?   -2.6   0.1      0.95   5.6e+03      59      61 ..      91      93 ..      77     104 .. 0.51

  Alignments for each domain:
  == domain 1  score: 62.2 bits;  conditional E-value: 5.7e-21
        Cmc1  1 mhkklkkkarkeCaelikalaeChkd.rllkvvgkCneekeamkkClkeyrtderlkdaekdriiekrl 68
                mh++l+++++++C ++i+al++Chk+ ++++++g Cn+ek+a+ +Clke   + ++k ++++r+++++l
  CCD25244.1  1 MHPQLEAERFHSCLDFIEALDKCHKKeYYKRIFGLCNNEKDALSQCLKEASLETKKKAIKQNREKRAQL 69
                9************************************************************99999876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.95
        Cmc1 59 ekd 61
                 + 
  CCD25244.1 91 IER 93
                222 PP

>> CBM_14  Chitin binding Peritrophin-A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.7   1.3e-05     0.076      16      53 .]       8      46 ..       2      46 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.3e-05
      CBM_14 16 skYyvCsngepveftCpeglvFdeetqtCdypen.vvqC 53
                ++++ C +  +   +C ++ ++ +  + C+  ++  +qC
  CCD25244.1  8 ERFHSCLDFIEALDKCHKKEYYKRIFGLCNNEKDaLSQC 46
                68****************************999977888 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.3     0.001       6.3      19      35 .]      10      26 ..       6      26 .. 0.81
   2 ?    6.0   0.1    0.0022        13      20      32 ..      34      46 ..      29      53 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.001
                TTTTHHHHHHHHHHHCC CS
        CHCH 19 fskCrkefeafkeCvkk 35
                f  C +++ea+++C kk
  CCD25244.1 10 FHSCLDFIEALDKCHKK 26
                56799999999999986 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0022
                TTTHHHHHHHHHH CS
        CHCH 20 skCrkefeafkeC 32
                ++C +e +a+ +C
  CCD25244.1 34 GLCNNEKDALSQC 46
                6777777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2210  (0.123264); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 946.59
//
Query:       CCD25245.1  [L=786]
Description: hypothetical protein NDAI_0E04280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-14   54.5   0.4    3.2e-14   53.0   0.4    1.7  1  Sec7       Sec7 domain
  ------ inclusion threshold ------
       0.14   12.6   2.9       0.34   11.3   0.2    2.8  2  DASH_Dad2  DASH complex subunit Dad2
       0.21   11.6   5.2       0.62   10.0   5.2    1.8  1  DUF3439    Domain of unknown function (DUF3439)
        2.3    8.2  13.6        3.8    7.5  12.0    2.1  2  Mucin      Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> Sec7  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.4     7e-18   3.2e-14      47     163 ..     151     266 ..      94     286 .. 0.78

  Alignments for each domain:
  == domain 1  score: 53.0 bits;  conditional E-value: 7e-18
                 -HHHHHHHHCSGGHHHHHHHHHHHCTS--TT--HHHHHHHHCCCS-B-SSHHHHHHHHHHHHHHHHHTTCTCG..-SHHHHHHHHHHHHHHHHHHC-TT CS
        Sec7  47 dkkklGeylgkekefnkevlkefvdlfdfsglrldeAlRlflssfrlpgEaqkierilekFaekyfeqnpevf..enadavfvLaysiimLntdlhnpq 143
                 + k   ++lg+++  n e+l+ f++l++   l+l + l+++ s++ +  Eaq i+rile+ ++++++ +p+++  +n + ++++ +s+++Ln dlhn+ 
  CCD25245.1 151 SFKDYADFLGSKE--NHEILQTFIHLLRPLPLSLLSVLQKISSNLYFIAEAQNIDRILEETSKQWVQCHPDTIwkSNYKLCHIVLFSLLILNSDLHNNI 247
                 44555899*****..*******************************************************99999999******************766 PP

                 S...CCS--HHHHHHCTTTTBTT CS
        Sec7 144 v...kkkmtledFiknnrgindg 163
                 +   +     ++   n++g +++
  CCD25245.1 248 TatsN----NNKSKTNISGSKHQ 266
                 53321....23333344443333 PP

>> DASH_Dad2  DASH complex subunit Dad2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.39   1.8e+03      37      83 ..     354     400 ..     337     416 .. 0.68
   2 ?   11.3   0.2   7.7e-05      0.34      11      53 ..     711     753 ..     705     760 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.39
   DASH_Dad2  37 tladgteavasVlanWqnvlraismaslkllqkaeeeaeeeeedeee 83 
                 +++   +  +s+ +  +++l + +  +++ +++++++a++e e++++
  CCD25245.1 354 QMDRSNSRTQSIYSTNDSILTSSTTTTTTTTTTTTTKARREFENTTS 400
                 56666667777778888888877777777775666655555555444 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 7.7e-05
   DASH_Dad2  11 LeaLkqlrdlsdslakqleeLeeklstladgteavasVlanWq 53 
                 L +Lkq++++ d+  ++ +e++ k+ +l +gt+  ++V++nW+
  CCD25245.1 711 LLQLKQFTQQLDEWIDKHNEIKSKIIELWSGTQFFEKVMDNWN 753
                 4456666666666666778999********************8 PP

>> DUF3439  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.2   0.00014      0.62      35      59 ..     364     388 ..     332     407 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00014
     DUF3439  35 gsgkpvrsiicpttttttttttttm 59 
                        si+  +ttttttttttt 
  CCD25245.1 364 SIYSTNDSILTSSTTTTTTTTTTTT 388
                 3334445676655555444444432 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.76   3.4e+03      22      48 ..     246     272 ..     228     280 .. 0.58
   2 ?    7.5  12.0   0.00086       3.8      40      91 ..     367     391 ..     341     405 .. 0.37

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.76
       Mucin  22 CvtangeGqsdaavveaaegqsklttt 48 
                  +ta  + ++ ++++++++ q+k t++
  CCD25245.1 246 NITATSNNNKSKTNISGSKHQQKFTSS 272
                 355555556666777777666665554 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00086
       Mucin  40 egqskltttttttkppttttttttasttittkttkattttttttttttatea 91 
                 +++++  t++ttt+++tttttt                           t+a
  CCD25245.1 367 STNDSILTSSTTTTTTTTTTTT---------------------------TKA 391
                 1111111111111111111111...........................111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1602  (0.0893524); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 5663.43
//
Query:       CCD25246.1  [L=639]
Description: hypothetical protein NDAI_0E04290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-42  141.9  20.0    1.7e-06   28.5   0.1    7.8  8  Sel1      Sel1 repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.33     6e+03      25      38 .]     304     317 ..     302     317 .. 0.85
   2 !   16.0   0.3   8.4e-07     0.015       1      38 []     318     353 ..     318     353 .. 0.87
   3 !   17.2   0.0   3.4e-07     0.006       2      38 .]     355     389 ..     354     389 .. 0.96
   4 !   28.5   0.1   9.3e-11   1.7e-06       1      36 [.     390     427 ..     390     429 .. 0.84
   5 !   20.7   0.1   2.7e-08   0.00048       3      38 .]     435     470 ..     434     470 .. 0.94
   6 !   19.8   0.0   5.2e-08   0.00094       3      37 ..     473     506 ..     471     507 .. 0.91
   7 !   19.9   0.6   4.9e-08   0.00088       2      37 ..     510     545 ..     509     546 .. 0.80
   8 !   28.3   0.1   1.1e-10     2e-06       1      38 []     547     582 ..     547     582 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.33
        Sel1  25 kAiewyekAAeqGd 38 
                 +A ++++k  ++G+
  CCD25246.1 304 EAQHYLKKLSDKGY 317
                 899*****999985 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 8.4e-07
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 ++A+y L+   +y  G   +   ++A+ +++ AA++G+
  CCD25246.1 318 SDAQYLLA--DAYSSGAFGKIENKEAFNLFQTAAKHGH 353
                 68******..888****544458**************9 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 3.4e-07
        Sel1   2 eAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 e++yr     ++++Glg+ +D +kA+ +++ AA++++
  CCD25246.1 355 ESAYRTS--HCLEEGLGTARDSRKALNFLKFAASRNH 389
                 89*****..*************************987 PP

  == domain 4  score: 28.5 bits;  conditional E-value: 9.3e-11
        Sel1   1 aeAmyrLGmfylylnGl.gvpkD...pekAiewyekAAeq 36 
                 ++Amy+LG++   ++G+ g+p D   ++ +++w+ +AA++
  CCD25246.1 390 SSAMYKLGLYS--FYGRmGLPNDvntKQNGVKWLSRAAAR 427
                 79******666..****769997666666*********97 PP

  == domain 5  score: 20.7 bits;  conditional E-value: 2.7e-08
        Sel1   3 AmyrLGmfylylnGl.g.vpkDpekAiewyekAAeqGd 38 
                 A y L+   +y+ G  + v +D++ A+e+y +AA +G+
  CCD25246.1 435 APYELA--KIYEQGFlDiVIPDEKYAMELYIQAATLGH 470
                 779***..999****979*******************8 PP

  == domain 6  score: 19.8 bits;  conditional E-value: 5.2e-08
        Sel1   3 AmyrLGmfylylnGlg.vpkDpekAiewyekAAeqG 37 
                 ++  LG  ++y++G + v +D ++ i++y +A  qG
  CCD25246.1 473 SATLLG--QIYEAGNDvVQQDTSLSIHYYTQASLQG 506
                 6789**..999****98999************9998 PP

  == domain 7  score: 19.9 bits;  conditional E-value: 4.9e-08
        Sel1   2 eAmyrLGmfylylnGl.g.vpk.DpekAiewyekAAeqG 37 
                  Am  L+   +yl G      k D+++A++w  +AA++G
  CCD25246.1 510 VAMLGLC--AWYLVGAePaF-KkDENEAFQWALRAANAG 545
                 6899999..555****5334.36*************998 PP

  == domain 8  score: 28.3 bits;  conditional E-value: 1.1e-10
        Sel1   1 aeAmyrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 + A++ LG   +y++G+g + ++++A +wye+AAe++d
  CCD25246.1 547 PKAQFTLG--HFYEHGKGCEINESLAWKWYERAAENND 582
                 579*****..899**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1309  (0.0730102); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4604.54
//
Query:       CCD25247.1  [L=1186]
Description: hypothetical protein NDAI_0E04300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.6e-107  359.3   3.2   1.6e-107  359.3   3.2    3.1  4  Kinesin        Kinesin motor domain
    1.2e-24   87.0   0.0    1.2e-24   87.0   0.0    4.1  3  Microtub_bd    Microtubule binding
  ------ inclusion threshold ------
        1.7    9.3  12.6        0.3   11.8   1.4    4.2  2  SlyX           SlyX


Domain annotation for each model (and alignments):
>> Kinesin  Kinesin motor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2      0.86   5.2e+03      28      54 ..      39      65 ..      11      77 .. 0.57
   2 !  359.3   3.2  2.7e-111  1.6e-107       1     333 []     114     455 ..     114     455 .. 0.94
   3 ?   -3.8   1.3      0.75   4.5e+03     138     148 ..     562     583 ..     517     624 .. 0.56
   4 ?   -3.4   1.2      0.57   3.4e+03      23      36 ..     772     785 ..     745     823 .. 0.43

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 0.86
                EEEEEEEECTTSCEEEEESEEEETTS- CS
     Kinesin 28 ekkskkenkeeeekkfkFdkvfdeeat 54
                +++++++n++++  + +Fdk +++++ 
  CCD25247.1 39 NNNTNTNNNSKQPFSSNFDKHITPSQR 65
                233333334444444456666655544 PP

  == domain 2  score: 359.3 bits;  conditional E-value: 2.7e-111
                 EE-SSSHHHHTTTTEBCEEEECTCTCEEEEEEEEEC.TTSCEEEEESEEEETTS-HHHHHHHHHHHHHHHHHTTSEEEEEEEESTTSSHHHHHTBC... CS
     Kinesin   1 RvRplnekekeeeeeeeveveeekkeeekkskkenk.eeeekkfkFdkvfdeeatqeevyeetakplvesvleGynatifaYGqtgsGKTyTmegk... 95 
                 R+R ++e+e +e+++ ++++   + ++ + s+ ++  +  +k+++Fd+vf+ e++qe+v++++ak+ ++++l+Gyn+t+faYGqtg+GKTyTm+g+   
  CCD25247.1 114 RCRSRSEREIKEKSSVVISTLGPQGNQVILSNPSSPlSYPKKSYSFDRVFGAESDQETVFNDAAKNYISEMLSGYNCTVFAYGQTGTGKTYTMSGDlni 212
                 9******************999999998888877652677899******************************************************** PP

                 ...........TTTSBSHHHHHHHHHHHHHHHCTTTHEEEEEEEEEEEEEETTEEEETTSTTTTSTSSEBEEEECTTSC..CEEETTS--EEESSHHHH CS
     Kinesin  96 ...........eeeeeGiipraleelFesikkekeekekefsvkvsylEiYneeiyDLLeskkskkkkklkiredskkg..evyvkgltevevksaeev 181
                              e++Giipr+l +lF++++ e     +++svk+s+lE+Yne++ DL+++++ +++++++i +++++   +++vkg++e+ +ksa+e 
  CCD25247.1 213 lgnleskdmilLGEHAGIIPRVLVNLFKMLALE-----NDYSVKISFLELYNERLKDLFAQNE-SEEETIRIFDNNNNAssSIMVKGMEEIYIKSAHEG 305
                 ***********8889***************763.....479*******************995.66668***9998876678***************** PP

                 HHHHHHHHHHHTSTTSSCTSHHCCSEEEEEEEEEEEETTTTTCEE.EEEEEEEEEEEEECCCHHHHSSTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCC CS
     Kinesin 182 lellekgeknrkvaetklneeSSRSHavftitleqknlkeeteek.vkisklnLvDLAGsErasktgaaegerlkEaaniNkSLlaLgrvisaLaekkk 279
                 l+ll+ g+ +rkva+tk+n+ SSRSH+vfti  + ++++  + e+ +k++klnLvDLAGsE+++++g ae++r +Ea+ iNkSLl+Lgrvi+aL+++  
  CCD25247.1 306 LQLLMDGSLKRKVASTKCNDLSSRSHTVFTIATNITKIDPISGEQyIKTGKLNLVDLAGSENINRSG-AENKRAQEAGLINKSLLTLGRVINALVDH-- 401
                 *************************************998877555*********************.58999************************.. PP

                 TSTSCGGGSHHHHHTGGGHSSSSEEEEEEEE-TBGGGHHHHHHHHHHHHHHCTT CS
     Kinesin 280 skhipYRdSkLTrlLqdsLgGnsktlmivtvspssenleetlstlkfaerakei 333
                 s+hipYR+SkLTrlLqdsLgG++kt++i+t+sp++ ++eet+stl++a rak+i
  CCD25247.1 402 SQHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKISMEETVSTLEYAIRAKSI 455
                 ****************************************************97 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 0.75
                 EEEETTSTTT...........T CS
     Kinesin 138 eiyDLLeskk...........s 148
                 +++DLLe+ +           +
  CCD25247.1 562 QLMDLLENYQinsnsfvqrvlQ 583
                 3444444444333332222222 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 0.57
                 TCTCEEEEEEEEEC CS
     Kinesin  23 ekkeeekkskkenk 36 
                 + +++  k+k++++
  CCD25247.1 772 TLEHQFMKEKESTN 785
                 22223333333333 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0     2e-28   1.2e-24      21     148 ..     108     265 ..     103     266 .. 0.84
   2 ?   -4.8   3.7         3   1.8e+04      79      79 ..     589     589 ..     511     666 .. 0.56
   3 ?   -1.2   1.4      0.29   1.8e+03      47      78 ..     792     820 ..     745     880 .. 0.58

  Alignments for each domain:
  == domain 1  score: 87.0 bits;  conditional E-value: 2e-28
                  B-EEEEEEECCCS-T.........EEEETTT..................TTTEEEE-SEEEECTTHCCCCCCCC.HHHHHHHHTT--EEEEEEES... CS
  Microtub_bd  21 niRvfarvrpelesek........akikfpe...............eekkkkkefsFdrvfeseseqeevfeei.sqlvqsaldgynvcifaygqTGs 94 
                  ni v++r+r ++e+e               +                 +  kk++sFdrvf +es qe vf++  + ++   l+gyn+++faygqTG 
   CCD25247.1 108 NIKVYVRCRSRSEREIkekssvviS-----TlgpqgnqvilsnpssPLSYPKKSYSFDRVFGAESDQETVFNDAaKNYISEMLSGYNCTVFAYGQTGT 200
                  899**99999999975556443330.....1334455666666777556889*******************996368999999*************** PP

                  ............................ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEET CS
  Microtub_bd  95 GKtyTmeg...............eeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDl 148
                  GKtyTm+g                 e+ag ipr++ ++f++++ +     +y+++++f+e+yne+++Dl
   CCD25247.1 201 GKTYTMSGdlnilgnleskdmilLGEHAGIIPRVLVNLFKMLALE----NDYSVKISFLELYNERLKDL 265
                  *************99988777666789999999999999999877....79*****************9 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 3
                  H CS
  Microtub_bd  79 l 79 
                  +
   CCD25247.1 589 I 589
                  2 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.29
                  TTTEEEE-SEEEECTTHCCCCCCCCHHHHHHH CS
  Microtub_bd  47 kkkkefsFdrvfeseseqeevfeeisqlvqsa 78 
                  ++ k++  d+v    +e +++f++i+ +++ a
   CCD25247.1 792 QSLKSYFQDHVS---KERSNIFKDIKNIINQA 820
                  222233333321...23444555555555544 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   3.9      0.33     2e+03      29      48 ..     514     536 ..     507     589 .. 0.61
   2 ?   11.8   1.4   4.9e-05       0.3      19      54 ..     756     791 ..     742     801 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHT-...X CS
        SlyX  29 qqqqidrlqrqlrllaerl...k 48 
                 q  +i  +++q+++ +e+     
  CCD25247.1 514 QKTKIHNMEEQIQKFKEKYvrqT 536
                 55555555555555555543221 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 4.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXX CS
        SlyX  19 ieeLndvvaeqqqqidrlqrqlrllaerlkeleess 54 
                  e+L +v++ qq++i+ l++q+ + +e  ++l+e+ 
  CCD25247.1 756 TEDLKQVIISQQKKIQTLEHQFMKEKESTNSLNENL 791
                 478******************998888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2889  (0.161136); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.50
# Mc/sec: 7084.48
//
Query:       CCD25248.1  [L=606]
Description: hypothetical protein NDAI_0E04310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-11   43.9   3.7    1.4e-10   41.1   0.7    2.9  2  Myb_DNA-binding  Myb-like DNA-binding domain
    8.5e-11   41.9   4.7    4.9e-10   39.5   1.1    3.3  2  Myb_DNA-bind_6   Myb-like DNA-binding domain
  ------ inclusion threshold ------
       0.13   12.4   0.5        4.1    7.6   0.1    2.5  2  Rap1_C           TRF2-interacting telomeric protein/Rap1 - C 
       0.25   11.8   2.6        5.8    7.4   0.4    3.0  2  Myb_DNA-bind_4   Myb/SANT-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.7   3.2e-14   1.4e-10       2      46 .]     109     153 ..     108     153 .. 0.94
   2 ?    2.3   0.1     0.045     2e+02      29      44 ..     537     552 ..     511     554 .. 0.64

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 3.2e-14
                      SSSBHHHHHHH..HHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 gkWteeEdelL..leavkkhGnrWkkIaerlggRtekqcrsrwrnyl 46 
                      ++W +e+d lL  l+ +kk+G  Wk+Ia+++ +Rt+++c+ rwr+++
       CCD25248.1 109 SSWEPEDDILLrqLKELKKLG--WKEIAQHFHNRTPNACQFRWRRLK 153
                      69*********99999999**..*********************985 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.045
                      HHTSS-HHHHHHHHHH CS
  Myb_DNA-binding  29 rlggRtekqcrsrwrn 44 
                       l++++++q+  r ++
       CCD25248.1 537 LLPNKSDNQIETRMKK 552
                      7889999999877655 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   1.1   1.1e-13   4.9e-10       1      45 [.     111     154 ..     111     170 .. 0.87
   2 ?    1.8   0.1     0.064   2.9e+02      17      41 ..     488     515 ..     479     535 .. 0.69

  Alignments for each domain:
  == domain 1  score: 39.5 bits;  conditional E-value: 1.1e-13
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLrp 45 
                     W +e+d +L++l e     Wk+Ia+++++Rtp++c++rw++ L++
      CCD25248.1 111 WEPEDDILLRQLKELKKLGWKEIAQHFHNRTPNACQFRWRR-LKS 154
                     899999999999999999*********88************.853 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.064
  Myb_DNA-bind_6  17 gndWknIaealn...rRtpkqcfdrwkn 41 
                     +++++ I ++ +   +R+ k++f  w n
      CCD25248.1 488 SSKFTFINSENPhanHRDRKELFSMWTN 515
                     4588888777534568999999988877 PP

>> Rap1_C  TRF2-interacting telomeric protein/Rap1 - C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1     0.039   1.7e+02      46      79 ..     109     140 ..      67     148 .. 0.78
   2 ?    7.6   0.1   0.00091       4.1      45      81 ..     504     551 ..     454     553 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.039
      Rap1_C  46 GiWteedDeaLkagderdlerlekkhgeerierR 79 
                   W +edD  L  ++ ++l++l +k   + +++R
  CCD25248.1 109 SSWEPEDDILL--RQLKELKKLGWKEIAQHFHNR 140
                 56*********..888888888888777777666 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00091
      Rap1_C  45 r......GiWteedDeaL.....kagderdlerlekkhgeerierRrk 81 
                 r        Wt  +D++L     k+ ++ +l+ l   +++++ie+R+k
  CCD25248.1 504 RdrkelfSMWTNDEDDVLkignsKKLSAIELSILLPNKSDNQIETRMK 551
                 355555578*********666555556666777888889999999987 PP

>> Myb_DNA-bind_4  Myb/SANT-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.4    0.0013       5.8      31      65 ..     125     154 ..     109     168 .. 0.76
   2 ?    3.0   0.0      0.03   1.3e+02      49      73 ..     539     563 ..     506     583 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0013
                     S--HHHHHHHHHHHHHHC----HHHHHHHHHHHHH CS
  Myb_DNA-bind_4  31 krnkklWeevaeamaergykrspeqCkeKienLkk 65 
                     +++   W+e+a++     ++r+p  C+ +++ Lk 
      CCD25248.1 125 LKKL-GWKEIAQHF----HNRTPNACQFRWRRLKS 154
                     4443.788888766....57899**********96 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.03
                     ----HHHHHHHHHHHHHHHHCSSSS CS
  Myb_DNA-bind_4  49 ykrspeqCkeKienLkkrYkkeker 73 
                      ++s+ q+++++++L  + ++e+++
      CCD25248.1 539 PNKSDNQIETRMKKLFTTKEEERDH 563
                     589************8887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1340  (0.0747392); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4302.27
//
Query:       CCD25249.1  [L=526]
Description: hypothetical protein NDAI_0E04320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-96  323.9  34.3    1.7e-96  323.7  34.3    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
      0.046   13.2   0.9      0.062   12.8   0.9    1.1  1  NA37            37-kD nucleoid-associated bacterial protein


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.7  34.3  1.9e-100   1.7e-96       4     440 .]      74     487 ..      70     487 .. 0.98

  Alignments for each domain:
  == domain 1  score: 323.7 bits;  conditional E-value: 1.9e-100
  Transp_cyt_pur   4 eeeRtwktlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfG.irgsllplllrvvi 96 
                     e ++ +++ln+ ++W++anl+++++++galg la+gLn++ svl+++++n++g+ +va+++l+G+++Gl+++ilsR++ G i+g++++l++   +
      CCD25249.1  74 EDKTEGSVLNATTMWFSANLVLSAYAVGALGpLAFGLNFGTSVLTVVFFNILGVLPVAFFSLFGPELGLRQMILSRFLTGnITGRIFSLFN--CV 166
                     4688899************************************************************************************..** PP

  Transp_cyt_pur  97 aivwfgvqawiGsealllmlgkifgk..wleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaegGp 189
                     a+v+++v ++i++++ll+m++++ g+  +l++g +++++s t+lvtff+f ++++++++ +v+++++f  i+a l  +++f  ++w+ + +++G+
      CCD25249.1 167 ACVGWCVLNTIVAAQLLNMVNEG-GHqlPLWAG-CLVIISGTVLVTFFGFKIIHAYEKWSWVPNFAVFLIIIARLKMSGKFSGGEWTSGSTTAGN 259
                     ***********************.666******.************************************************************* PP

  Transp_cyt_pur 190 vldkavklgkselflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfdet.ag 283
                     vl+    +g       a +g +a++at+++   D+t+y+++  ++ ki+++ v++l ++l++++il+aa+a+ a ++++w+ +     +d + +g
      CCD25249.1 260 VLS----FG------CAAFGYAAAWATYAA---DYTVYMPRDSNKFKIFFSLVAGLIFPLCFTMILGAACAMGAVNDPVWKQY-----YDTNaMG 336
                     ***....55......789************...**************************************************.....999999* PP

  Transp_cyt_pur 284 vllililvalaqlgvnisanllsagldlaallP..kkinikrgsliaavialvivpwkllsssskl..ftaflsllavflspvagviiadyfvvr 374
                     +l+++ilv+++ +g++ ++++l+a++++a+++P  ++i++++++++++++++++++w+  +++++l  ++++++++  fl++++  i  +y +++
      CCD25249.1 337 GLTYAILVPNSLHGFGDFCCVLLALSTIANNIPnmYTIALSVQAFWEPLAKIPRALWSVAGNATALgiAIPACYYFESFLEKFMNTIA-YYAAIY 430
                     ************************************************************************************9776.****** PP

  Transp_cyt_pur 375 rgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylvG 440
                     +   +++++++rr+  aY+++++  +  ++++i+G a  +vg         ++g+++++++sy+vG
      CCD25249.1 431 ICLSCAEHFVFRRSIKAYNVEDWNDPSKLPVGIAGCAGLIVG---------AFGVALGMCQSYWVG 487
                     ******************************************.........9*************9 PP

>> NA37  37-kD nucleoid-associated bacterial protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.9   6.9e-06     0.062     221     285 ..       4      66 ..       1      83 [. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.9e-06
        NA37 221 leegesvdleelaeelfkdnpeekefvkeeeeyeleeefpvdkekklkklkkfigsgigisisfd 285
                  e++e+ d+ +l +++++ +++ek f+++  +  +ee+f+vd+ +k  kl++f+++   ++ +  
  CCD25249.1   4 FEAKETYDIVDLEKNFPSTQTSEKVFTEN-GSLSVEEQFSVDN-TKAAKLVIFSNLINRLNAETN 66 
                 6899**************99988999999.*************.*********998777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3801.26
//
Query:       CCD25250.1  [L=540]
Description: hypothetical protein NDAI_0E04330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-92  309.9  40.1    3.1e-92  309.7  40.1    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
        0.1   12.4   0.1        0.1   12.4   0.1    2.8  4  VIT1            VIT family


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.7  40.1   3.4e-96   3.1e-92       1     440 []      83     501 ..      83     501 .. 0.98

  Alignments for each domain:
  == domain 1  score: 309.7 bits;  conditional E-value: 3.4e-96
  Transp_cyt_pur   1 pvpe.eeRtwktlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfG.irgsllplll 92 
                     p+++ e++++++ln+ s+W++anl+i+++++g+lg l++gLn++ svlvi+++n++g+  va+++++Ga+ Gl+++ilsR++ G i+++++ +++
      CCD25250.1  83 PITDeEKTDDSLLNASSMWFSANLVIAAYALGGLGpLVYGLNFGTSVLVIVFFNILGLLSVAFFSVFGAEFGLRQMILSRFLLGnITARVFAVIN 177
                     6777588999************************************************************************************* PP

  Transp_cyt_pur  93 rvviaivwfgvqawiGsealllmlgkifgk..wleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvka 185
                        +a+v++gv ++++s++ll+m++   g+  ++++g ++++++ t+lvtff++ ++++++ + +v+++++f vi+a l +++ f  ++w+ +  
      CCD25250.1 178 --SVACVGWGVVNTLASAQLLNMVNHTSGHscPIWAG-CLIIVGCTVLVTFFGYNIIHAYERWSWVPNLAVFLVIIARLSKSGNFSGGEWTSGPN 269
                     ..99*********************************.********************************************************* PP

  Transp_cyt_pur 186 egGpvldkavklgkselflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfde 280
                     ++ +vl+    +g      sav+g++ g++t+++   D+t+y+++ ++++ki+++ v++l+++l++++il+aa+a+ a + +aw+++     +d 
      CCD25250.1 270 TAASVLS----FG------SAVYGFATGYTTFAA---DYTVYMPRSTNKYKIFFSIVAGLSFPLFFTMILGAACAMGAVNNPAWKAY-----YDT 346
                     **99999....55......9**************...**************************************************.....999 PP

  Transp_cyt_pur 281 t.agvllililvalaqlgvnisanllsagldlaallP..kkinikrgsliaavialvivpwkllsssskl..ftaflsllavflspvagviiady 370
                     + +g++++++lv+++ +g++ ++++l+a++++++++P  +++++++++++ ++ ++++v w++++++++   ++++ +++++f+++++  i+ +y
      CCD25250.1 347 NgMGGVTYAVLVPNSLHGFGEFCCVLLAMSTVSNNIPnmYTVALSVQAIWSPLSKVPRVAWTMMANAATFgiAVPAGYYFDGFMENFMNTIG-YY 440
                     99*******************************************************************99999******************.** PP

  Transp_cyt_pur 371 fvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylvG 440
                     ++++ ++  ++++++r+ +  Y+++++     ++++i+G  a +vg         ++g+++++ ++y+ G
      CCD25250.1 441 LAIYTAISLSEHFIYRHGFKGYNIEDWNDTSKLPIGIAGCCALVVG---------AFGVALGMSQTYWTG 501
                     ***************99999**************************.........99**********977 PP

>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   1.2e-05       0.1     103     189 ..      70     171 ..      28     197 .. 0.69
   2 ?   -3.4   0.2      0.79   7.1e+03     172     172 ..     324     324 ..     306     357 .. 0.59
   3 ?   -3.6   0.1      0.92   8.3e+03     196     213 ..     401     418 ..     367     419 .. 0.71
   4 ?   -1.0   0.5      0.15   1.3e+03     172     196 ..     477     501 ..     470     514 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.2e-05
        VIT1 103 vaaellknpdallelmlreelgpsaseel.asplkaAlssalsfliGgliPllpylfvesvglalvvsiavtllalllfGavkallt............ 188
                 +a++l ++ + + e  + ee + ++s  +  s + +A  + +++++Ggl Pl+  l + +  l++v+  ++ ll +++f +++a ++            
  CCD25250.1  70 IASQLNAETNGV-EPITDEE-KTDDSLLNaSSMWFSANLVIAAYALGGLGPLVYGLNFGTSVLVIVFFNILGLLSVAFFSVFGAEFGlrqmilsrfllg 166
                 444444444443.3333333.33332222368899******************9998887778888887888888889998888888555554455555 PP

        VIT1 189 ....g 189
                     +
  CCD25250.1 167 nitaR 171
                 44333 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.79
        VIT1 172 v 172
                 +
  CCD25250.1 324 M 324
                 2 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 0.92
        VIT1 196 alrmlliGalAaaaayli 213
                  +  ++++++A aa+++i
  CCD25250.1 401 KVPRVAWTMMANAATFGI 418
                 444578888888888887 PP

  == domain 4  score: -1.0 bits;  conditional E-value: 0.15
        VIT1 172 vtllalllfGavkalltgssklvsa 196
                 +++++ l++Ga++  l+ s+  + +
  CCD25250.1 477 IAGCCALVVGAFGVALGMSQTYWTG 501
                 4444455555555444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       801  (0.0446762); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3974.65
//
Query:       CCD25251.1  [L=297]
Description: hypothetical protein NDAI_0E04340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-52  177.0   0.2    3.6e-52  176.5   0.2    1.2  1  HisG      ATP phosphoribosyltransferase
    6.9e-26   90.2   0.0    1.1e-25   89.5   0.0    1.4  1  HisG_C    HisG, C-terminal domain


Domain annotation for each model (and alignments):
>> HisG  ATP phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5   0.2     4e-56   3.6e-52       1     160 []      58     218 ..      58     218 .. 0.95

  Alignments for each domain:
  == domain 1  score: 176.5 bits;  conditional E-value: 4e-56
                 -GGGHHHHHHTTSSSEEEEEHHHHHHCT...TEEEEEEESESEEEEEEEEETTSS--SGCGG.TT-.EEEEES-HHHHHHHHHHT......T-EEEEEE CS
        HisG   1 raadiptyVeegavdlGitGkDvveEskeeeeveelldLgfgkcklvvavpeesevkslkdlvedkgkriaTsypnlakkyfeek......glkveiik 93 
                 +aadip++V+eg++dlGitG D+v+E+k   +ve   dL+fg+ckl+v+vp + e+k+ k+l   +gk+i++s++nl+k+yf+++      ++ +++ +
  CCD25251.1  58 PAADIPMFVGEGRCDLGITGVDQVREAK--MDVELPIDLKFGSCKLQVQVPVNGEYKNPKQL---IGKTIVSSFTNLTKEYFAKLegvpieKMATKVKY 151
                 699***********************74..57**********************9*999987...899*****************99999999****** PP

                 -SS-CTHHHHTTS-SEEEEEESSSHHHHHTTEEEEEEEEEEEEEEEEEHHHHHSHHHHHHHHHHHHH CS
        HisG  94 lsGsvEaapalglaDaIvDlvetGeTLrangLkaietilessavLiankkslkkkekieellerlrg 160
                 + GsvEa++alg+aDaIvDlve+GeT+ra+gL  i+t+le+sa++i +k+  k+ e+ie++ +r++g
  CCD25251.1 152 VGGSVEASCALGVADAIVDLVESGETMRAAGLIDIATVLETSAHVIESKRPNKDIELIETIKSRIEG 218
                 **********************************************7777777788********986 PP

>> HisG_C  HisG, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.0   1.3e-29   1.1e-25       1      73 []     222     294 ..     222     294 .. 0.99

  Alignments for each domain:
  == domain 1  score: 89.5 bits;  conditional E-value: 1.3e-29
                 TTTEEEEEEEEEGGGHHHHHHH---SSS-EEEE-.SS-EEEEEEEEECCCHHHHHHHHHCTT-EEEEEEE-S- CS
      HisG_C   1 ArkyvllmynvpkesleevlkilPGlrsPTvspladegwvaVsavveekevaevideLkaaGAsdIlvlpiek 73 
                 A++yv ++yn+p+ +l+e+l i+PG+r+PT+s++++egwvaV++++e+++   ++deLk+ GA dI+v++i++
  CCD25251.1 222 AQRYVCCNYNAPEGQLKELLPITPGRRAPTISKIDSEGWVAVNSMIERSKKGIIMDELKRKGAADIMVFEISN 294
                 9**********************************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2218.30
//
Query:       CCD25252.1  [L=619]
Description: hypothetical protein NDAI_0E04350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-28   99.0   1.3    1.7e-28   99.0   1.3    2.0  2  CBM_21    Carbohydrate/starch-binding module (family 21)
    1.5e-11   44.7   2.7    4.5e-11   43.2   2.7    1.9  1  CBM53     Starch/carbohydrate-binding module (family 53)
  ------ inclusion threshold ------
       0.61   10.4   3.6        1.6    9.1   0.8    2.8  2  Tox-URI2  URI fold toxin 2


Domain annotation for each model (and alignments):
>> CBM_21  Carbohydrate/starch-binding module (family 21)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         2   1.2e+04      50      82 ..     270     302 ..     269     307 .. 0.74
   2 !   99.0   1.3   2.9e-32   1.7e-28      13     112 ..     503     605 ..     497     606 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
      CBM_21  50 evpaeyvksaeeslkenntdrFkFkiklknlln 82 
                 + p +y ++ e+  + ++ d+F+  ++ k+++n
  CCD25252.1 270 KAPVKYFSKDESPISVQDRDEFEALLNFKQNAN 302
                 567788888888888888899987776666555 PP

  == domain 2  score: 99.0 bits;  conditional E-value: 2.9e-32
      CBM_21  13 elskdkkvlvGlvaVknlafeKavavrytldnWktilevpaeyvksaeeslkenntdrFkFkiklknllnsekaklelcikYevn....eeeyWdnNeg 107
                 ++++++++++G++ Vkn+ ++K+v vryt+++W+t+++v++ +v++a+ ++ ++n++ F+F i+  ++++s+ akle+ci+Y+++    ++eyWdnN+g
  CCD25252.1 503 TIQRSTRIITGKILVKNIFYDKRVVVRYTWNGWRTVHDVECIWVSDADGIVPGTNMEVFRFLIDDVSKVDSR-AKLEFCIQYTTRndhvRQEYWDNNDG 600
                 5667899********************************************************877777655.8**********98888899******* PP

      CBM_21 108 kNYev 112
                 kNY+v
  CCD25252.1 601 KNYKV 605
                 ***98 PP

>> CBM53  Starch/carbohydrate-binding module (family 53)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   2.7   7.6e-15   4.5e-11       2      79 ..     519     605 ..     518     607 .. 0.78

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 7.6e-15
       CBM53   2 kvyYnkslakevtlhygfngWkssqdvamtks......assgdseedwfeatvtvpkea...seldfvfds......egeenWDNNngqnYkv 79 
                 +++Y+k++     ++y++ngW++++dv++ ++          + + ++f + ++  ++     +l+f++++       ++e+WDNN+g+nYkv
  CCD25252.1 519 NIFYDKRV----VVRYTWNGWRTVHDVECIWVsdadgiV--PGTNMEVFRFLIDDVSKVdsrAKLEFCIQYttrndhVRQEYWDNNDGKNYKV 605
                 89999999....********************9998552..45567777777643222233366*****6689987656************98 PP

>> Tox-URI2  URI fold toxin 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.8   0.00026       1.6      20      54 ..     318     352 ..     308     377 .. 0.85
   2 ?    0.3   0.1      0.14   8.5e+02       5      25 ..     586     606 ..     583     609 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00026
    Tox-URI2  20 evlKlGiskerIkesglskrlrrqlrklekangkl 54 
                 + l +G+ +++Ik+s   ++lr+++r+ + ++ k+
  CCD25252.1 318 QKLRIGEQSMPIKSSASETKLRKSKRFQNVIKDKK 352
                 4589*********************9988776665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.14
    Tox-URI2   5 kkkhhgyeiydkdeeevlKlG 25 
                 +++h   e++d+++++ +K+G
  CCD25252.1 586 RNDHVRQEYWDNNDGKNYKVG 606
                 56777889************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1150  (0.0641419); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.27s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4382.95
//
Query:       CCD25253.1  [L=37]
Description: hypothetical protein NDAI_0E04360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       883  (0.0492498); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 288.07
//
Query:       CCD25254.1  [L=306]
Description: hypothetical protein NDAI_0E04370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-47  157.6   6.6    9.3e-18   64.0   0.1    3.1  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.0   0.1   5.2e-22   9.3e-18       5      94 ..      16     100 ..      12     103 .. 0.94
   2 !   52.6   0.1   1.8e-18   3.2e-14       7      93 ..     117     199 ..     111     202 .. 0.93
   3 !   43.6   0.3   1.2e-15   2.1e-11       7      93 ..     218     299 ..     214     301 .. 0.95

  Alignments for each domain:
  == domain 1  score: 64.0 bits;  conditional E-value: 5.2e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 +++  l G +a+  +++ +tPld+vK+rlq+++k +k+      +d   ki+k+eG+++l+ G++++l++++ + a k + ye +kr++ 
  CCD25254.1  16 YAACTLGGIIACGPTHSSVTPLDLVKCRLQVNSKLYKS-----NIDGALKIIKNEGISKLFTGVGATLIGYSLQGAGKYGGYELFKRFYS 100
                 56778899***************************999.....68******************************************986 PP

  == domain 2  score: 52.6 bits;  conditional E-value: 1.8e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                  +l+a++ a  +a ++ +P++ +K++ qt      ++    +++ +kk+y  eG++g+y+G++p + r++p++++kf+++e + + +
  CCD25254.1 117 IYLMASASAEFFADIMLCPFEAIKVKQQTTMPPFCNN----VVEGMKKMYAAEGIKGFYKGITPLWCRQIPYTMCKFTSFERIVEAI 199
                 5799*****************************9874....9***************************************998876 PP

  == domain 3  score: 43.6 bits;  conditional E-value: 1.2e-15
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   7 kellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                  +++ G lag++ ++v +P dv+  ++ +++k +++     ++ + k+iyk+ G+ gl+ Gl+++++++   ++ ++++y+++k ++
  CCD25254.1 218 VSFVGGYLAGILCAVVSHPADVMVSKINNERKFGET-----MAIASKRIYKNIGFIGLWNGLTVRIFMIGTLTSFQWLIYDSFKAYI 299
                 68999****************************999.....8999***************************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2216.32
//
Query:       CCD25255.1  [L=760]
Description: hypothetical protein NDAI_0E04380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-77  259.8  25.2    4.6e-77  259.8  25.2    3.6  3  MMR1      Mitochondrial Myo2 receptor-related protein


Domain annotation for each model (and alignments):
>> MMR1  Mitochondrial Myo2 receptor-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.8  25.2   2.5e-81   4.6e-77       1     260 []      62     390 ..      62     390 .. 0.98
   2 ?   -9.7  27.7         1   1.8e+04      54     191 ..     503     600 ..     408     610 .. 0.54
   3 ?  -16.1  42.2         1   1.8e+04      57     203 ..     506     675 ..     490     745 .. 0.59

  Alignments for each domain:
  == domain 1  score: 259.8 bits;  conditional E-value: 2.5e-81
        MMR1   1 KLsElsrtGrs......rqrrnsdtlrsnSPirlqllsn.................aPkMLKpEYl..sqkqnsn.......lPllSallk.....nss 62 
                 KL+E++++G+s      ++rr+sdt+++nSP++l+l+sn                 +P+M+K+EY+  ++k++++       lPllSal+k     nss
  CCD25255.1  62 KLNEINFSGTStttsqlQERRKSDTFLPNSPVMLPLFSNnnnpthgasatannnanKPTMFKREYFspATKHSNTtniskasLPLLSALMKgsivtNSS 160
                 9*************99999***********************************************9988899989*********************** PP

        MMR1  63 kntenskkaseqeatgskqnnekelnvekski.skltiketleqlreeksqqksksaekekqkrsvaakseqesekveelekskser............ 148
                 +++e+s++a+e++++g+k+nn   +n+ ksk+ skltike+leq+     qqk +s++k++q++s+++++eq+se+++e+e+++ser            
  CCD25255.1 161 PTVEPSTRAIENDSIGTKSNN---TNGLKSKSkSKLTIKESLEQF-----QQKLESSFKDRQPLSTPIHMEQHSEITNERESNTSERtnnddirdvkqq 251
                 ******************999...899999999************.....9************************************************ PP

        MMR1 149 ....eisetssaiSestlleledle.tteaetlnpnnsveek.....kpavektkspskrivSts.svassleevelnelpkdleldalptDknGFvq. 235
                     ei+e+ss+iS+s+ll+l+ +e t+e++tlnp +s++ k     kp+v++++++s+r++St+ +++++lee+++n++++dl      +D+nGF++ 
  CCD25255.1 252 qivtEINEPSSTISSSSLLPLQ-MEpTYERDTLNPLYSDYLKeaipeKPNVNVYRGNSMRMSSTAtTLYTPLEEQHENQIQQDL------VDMNGFAKp 343
                 **********************.999***************************************99*****************......********* PP

        MMR1 236 ...................lk...nnnknRySfISStstDydadwyd 260
                                    ++   nn+knRySfISStstDyd+dwyd
  CCD25255.1 344 yntlsthgnqlrnagmnenIRsgyNNSKNRYSFISSTSTDYDIDWYD 390
                 ***************9988556789*********************8 PP

  == domain 2  score: -9.7 bits;  conditional E-value: 1
        MMR1  54 lSallknsskntenskkaseqeatgskqnnek..elnvekski.skltiketleqlre.eksqqksksaekekqkrsvaakseqesekveelekskser 148
                     +k+s+knt+ +k ++ ++ +gs    ++  +++ e+++  +++  ke   q+r+ +k  +     +ke++k+s+ ak   +++            
  CCD25255.1 503 TNKKMKKSKKNTKKEKYSN-ESRSGSRGIDNTveTSKKETNDEsMEMKLKEMEMQFRNyQKMLTDLTIEQKERKKKSTRAKCGDKNKN----------- 589
                 2223445555555332222.22222222222223333333333344445555555543333333333344444444444443333222........... PP

        MMR1 149 eisetssaiSestlleledletteaetlnpnnsveekkpavek 191
                                                 +++ + p++++
  CCD25255.1 590 --------------------------------KSKSERPVSNQ 600
                 ................................22222233333 PP

  == domain 3  score: -16.1 bits;  conditional E-value: 1
        MMR1  57 llknsskntenskkaseqeatgskqnnek..elnvekski.skltiketleqlre.eksqqksksaekekqkrsvaakseqesekveelekskser... 148
                  +k+s+knt+ +k ++ ++ +gs    ++  +++ e+++  +++  ke   q+r+ +k  +     +ke++k+s+ ak   +++ + + e++ s++   
  CCD25255.1 506 KMKKSKKNTKKEKYSN-ESRSGSRGIDNTveTSKKETNDEsMEMKLKEMEMQFRNyQKMLTDLTIEQKERKKKSTRAKCGDKNKNKSKSERPVSNQrke 603
                 5889999999555544.4444444434444555566665558999999999997765666666666777777777777666655555555533322345 PP

        MMR1 149 ...........eisetssaiSestlleledletteaetlnpnnsveek...........kpavektkspskrivSts 203
                            +i+e++++iS+      + + t e+et+++++++  +           +    ++++  +++ S +
  CCD25255.1 604 rlarissrelkKIEEQNDSISDLNTSFTK-ITTSEGETNEAEEEEDLEyedeyeysddeE----EQEEVDQSLQSRE 675
                 66666666666555555555554443333.344444444444444433444444433321....3333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2963  (0.165263); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.12u 0.35s 00:00:01.47 Elapsed: 00:00:00.52
# Mc/sec: 4392.37
//
Query:       CCD25256.1  [L=445]
Description: hypothetical protein NDAI_0E04390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-50  171.6   1.1      2e-50  170.8   1.1    1.4  1  Peroxin-13_N  Peroxin 13, N-terminal region
    5.6e-09   35.5   0.0    1.2e-08   34.4   0.0    1.6  1  SH3_1         SH3 domain
    4.9e-08   32.7   0.0      1e-07   31.7   0.0    1.6  1  SH3_9         Variant SH3 domain
    6.3e-08   32.2   0.0    1.6e-07   30.9   0.0    1.8  1  SH3_2         Variant SH3 domain
  ------ inclusion threshold ------
      0.015   15.5   0.0      0.033   14.5   0.0    1.6  1  SH3_3         Bacterial SH3 domain


Domain annotation for each model (and alignments):
>> Peroxin-13_N  Peroxin 13, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   1.1   5.6e-54     2e-50       3     145 .]     173     323 ..     171     323 .. 0.90

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 5.6e-54
  Peroxin-13_N   3 tqsaeestratfqliesivgafgsfaqmLestymAthsSFfavvsvaeqfgrLketlgsvlsifalirllkkilskllglll....ekkkkekskae 95 
                    + + estratfqliesi+g++++faqmLes+y Ath+SFf++vsvaeqf++Lk+ lgs+++if+++++lkk+l+ +++++l    +k+k+++s  +
    CCD25256.1 173 SNDIGESTRATFQLIESIIGTVTGFAQMLESSYLATHNSFFTMVSVAEQFSYLKDSLGSFFGIFTIMKVLKKLLYFITKGKLgnsiTKNKRQRSLLD 269
                   67899***************************************************************************99999989999999999 PP

  Peroxin-13_N  96 efwkkfessskkke....ekeskeekkkk.kisskplllflaaviglPyllkkli 145
                   ef +kf++ +++++    + + +++kk+  kis+kpl++fl+ v+g+P+ll+k+i
    CCD25256.1 270 EF-NKFADGNDDHQvrgaNGQFEQTKKRGrKISMKPLIIFLMGVFGFPFLLNKFI 323
                   99.9999988777789864444444444446**********************98 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.5e-12   1.2e-08       1      47 [.     374     425 ..     374     426 .. 0.95

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 3.5e-12
                 EESSSBEXSS.TTBXEBSTTEEEEEEEECSS.....SEEEEEETTSTEEEEEE CS
       SH3_1   1 iAlYDYeaee.sdELsfkkGDviivleksed.....gWwkgrlkgtgkeGliP 47 
                 +A+Y + +e+ + EL++ kGD + +++k++      +Wwk+r k+ g  G++P
  CCD25256.1 374 RAKYKFVPENpEMELQLSKGDLMAIISKQDPlgrdsEWWKVRTKN-GDMGYVP 425
                 79********99*****************9888999********9.68****9 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   2.9e-11     1e-07       1      49 []     375     430 ..     375     430 .. 0.92

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 2.9e-11
       SH3_9   1 Alypyepredd.eLsLqrGDvitviee.....sedgWlegsl.tGrtGlvPanyve 49 
                 A+y ++p +++ eL+L++GD   +i++      ++ W+ ++  +G  G+vP ny+e
  CCD25256.1 375 AKYKFVPENPEmELQLSKGDLMAIISKqdplgRDSEWWKVRTkNGDMGYVPYNYLE 430
                 89***********************665788889******977***********97 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   4.4e-11   1.6e-07       2      56 ..     373     431 ..     372     432 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.9 bits;  conditional E-value: 4.4e-11
                 EEESS-B-SCGCCB.--B-TTEEEEEE..EEEECT.....TEEEEEE.CCCEEEEEGCGEEE CS
       SH3_2   2 vraiedyvgedkse.LsfkkGdvikvlslgskdsd.....gwwegev.gGrvGlfPsslvee 56 
                 +ra  ++v+e+++  L++ kGd+ +++   sk ++     +ww++++ +G  G++P +++e+
  CCD25256.1 373 ARAKYKFVPENPEMeLQLSKGDLMAII---SKQDPlgrdsEWWKVRTkNGDMGYVPYNYLEI 431
                 7889999**999878************...5555567778*******9***********997 PP

>> SH3_3  Bacterial SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   9.2e-06     0.033      28      55 .]     405     430 ..     389     430 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.2e-06
       SH3_3  28 leetgggeWykvrtddgteGwvssgyls 55 
                 l+++ +  W+kvrt +g  G+v   yl+
  CCD25256.1 405 LGRDSE--WWKVRTKNGDMGYVPYNYLE 430
                 555555..**************999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       544  (0.0303419); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3074.91
//
Query:       CCD25257.1  [L=267]
Description: hypothetical protein NDAI_0E04400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-47  162.2  19.0    2.9e-47  161.6  19.0    1.3  1  eIF3_subunit  Translation initiation factor eIF3 subunit
  ------ inclusion threshold ------
      0.021   14.8   1.6      0.033   14.1   1.6    1.2  1  GvpL_GvpF     Gas vesicle synthesis protein GvpL/GvpF


Domain annotation for each model (and alignments):
>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6  19.0   3.3e-51   2.9e-47       2     242 .]       2     267 .]       1     267 [] 0.77

  Alignments for each domain:
  == domain 1  score: 161.6 bits;  conditional E-value: 3.3e-51
  eIF3_subunit   2 sdWDdedfepssvakkpavaa.kWddEdededvkdswdaeeeeeeekekakkaaeakakaakakkkkskkqkiaekeerrkaeeeeaeeeeeleeed 97 
                   s WDde +  s     + v   +Wd E+  e++++swdae   +ee++ + ka+     +  +k+k+ kk k              ++   +l+++d
    CCD25257.1   2 S-WDDEAVTGSMGMDDEEVLLeSWDAEE--EPIMESWDAEVVPKEETKPKSKAS-----TSGTKNKNGKKSKE-------------TTPGIALDALD 77 
                   5.88888844443333333334888864..788888887666555444332222.....22233333333222.............3366899**** PP

  eIF3_subunit  98 eaarkerlrkaeeesDlknaadlFGgv..........................attketdlssldlfnpktkedFeelrkalaekltklekksp.hY 167
                   ++ r+e+l+kae+esDl naadl+G++                            tket+ + ++lf+++tk+d+++lrkal++ + k+++ksp +Y
    CCD25257.1  78 PKMRRELLKKAELESDLSNAADLLGSLdlaeehprarqlkeqqeaallmmsqpVLTKETEFDVHPLFQAETKKDYQDLRKALSKSIVKMHDKSPlNY 174
                   *************************99************************98788***************************************** PP

  eIF3_subunit 168 .ssfleelirdlakslssedikkvassltvlaneKqkeeKaae.........kggKkkkkakaktslk...adteayddddddy.......DDFM 242
                    ss++++lird+ak++s e+i++++++l+vl++eK+kee++a+         +gg  kkkak kt+l     +++++d   dd+       DDFM
    CCD25257.1 175 sSSLAIDLIRDVAKPMSIESIRQTVATLNVLIKEKEKEERQARlarvrggtaTGGAGKKKAKVKTNLGgafKKDQDFDL--DDMnydnfgdDDFM 267
                   ***************************************************9555555566777774332222222332..22233334657**9 PP

>> GvpL_GvpF  Gas vesicle synthesis protein GvpL/GvpF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.6   3.7e-06     0.033     129     223 ..     106     222 ..      98     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.7e-06
   GvpL_GvpF 129 lleedpelrelreeieaasesgtayllrkrlgqrleealeerreelaeeleeaLaplaeevrerepqd......................eemvlnaaf 205
                 l+ee+p++r+l+e+ eaa     +  l k+++  ++   +++ +++ ++l++aL++  ++++ + p +                      +++v  + +
  CCD25257.1 106 LAEEHPRARQLKEQQEAALLMMSQPVLTKETEFDVHPLFQAETKKDYQDLRKALSKSIVKMHDKSPLNyssslaidlirdvakpmsiesiRQTVATLNV 204
                 789*************999988899************************************************************************** PP

   GvpL_GvpF 206 Lvdrdreeefgeaveela 223
                 L++++++ee ++++++++
  CCD25257.1 205 LIKEKEKEERQARLARVR 222
                 *********999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1212  (0.0676); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1907.51
//
Query:       CCD25258.1  [L=183]
Description: hypothetical protein NDAI_0E04410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-50  169.1   0.6    7.2e-50  168.9   0.6    1.0  1  PRELI     PRELI-like family


Domain annotation for each model (and alignments):
>> PRELI  PRELI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9   0.6     4e-54   7.2e-50       2     156 ..      17     170 ..      16     172 .. 0.97

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 4e-54
                 HHHHHHHT--SBTTBTTEEEEEEEEEEEET.TSEEEEEEEEEEEEESSTTSTTTSSSEEEEEEEEEEEEETTTTEEEEEEEESSSTTTEEEEEEEEEEE CS
       PRELI   2 qVtaaflrryPnpiskhvisvdvlereldd.egklvteRlitlqvrvPrwlkkligvaktvyvleesvvdlkkrtlkletrNltfssllkveErvvYkp 99 
                 +V+ af++ryPnp+s+hv+s+d+l+r++d+ +gkl+t+Rl+++q+++P+w+++lig + +++++e sv+d+k ++++++t+Nl+++++lkveE+++Y+ 
  CCD25258.1  17 SVSCAFFNRYPNPYSSHVLSIDTLSRRVDTqDGKLYTTRLLKKQGKLPSWTSSLIGRVSDSWIIEYSVIDPKLQKMETYTKNLDHIKILKVEEYTTYYY 115
                 5899************************9999******************************************************************* PP

                 ETTTT..EEEEEEEEEE..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       PRELI 100 hpensekTvlkqeakisvkgslfglsskveklllkkfsenakkgkeglesvlkelee 156
                 +++n + Tv+++e+k+s+ g+  g+++k+e+++ +kf+e++kk+++g+ +v+++ ee
  CCD25258.1 116 DSKNRN-TVVTSEVKFSS-GFHLGIKNKIENWSRSKFDESVKKSRMGMSFVMQKWEE 170
                 ****99.*********88.889*******************************9655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1363.09
//
Query:       CCD25259.1  [L=280]
Description: hypothetical protein NDAI_0E04420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2169.77
//
Query:       CCD25260.1  [L=457]
Description: hypothetical protein NDAI_0E04430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-80  269.3   3.6    2.9e-80  268.7   3.6    1.2  1  NMT_C           Myristoyl-CoA:protein N-myristoyltransferase,
    3.9e-76  254.3   1.1    7.8e-76  253.3   0.1    2.0  2  NMT             Myristoyl-CoA:protein N-myristoyltransferase,
    7.3e-05   22.9   0.0     0.0016   18.5   0.0    2.3  2  Acetyltransf_9  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
      0.052   13.8   0.0       0.12   12.6   0.0    1.6  1  Acetyltransf_1  Acetyltransferase (GNAT) family
      0.084   13.5   0.0       0.22   12.2   0.0    1.8  1  Acetyltransf_3  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> NMT_C  Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.7   3.6     8e-84   2.9e-80       1     209 []     227     455 ..     227     455 .. 0.93

  Alignments for each domain:
  == domain 1  score: 268.7 bits;  conditional E-value: 8e-84
                 HTTSS--BTTS-HHHHHHHH---SS-SSTTEEE--CCCHHHHHHHHHHHHTTSSEEEE--HHHHHHHHC-SST......TSBTTTEEEEEEEETTS.EE CS
       NMT_C   1 evgFsalprnstlarlvklyklpeetktkglremeekDveavtellekylkrfdlaqvfseeeveHwllskkk......kreeqvvwsYVvedeetkki 93 
                 +vgF+ lp+n ++a++v++y++p++tk++glr+m+ +D+++v +l+eky++rfdl+q+f+++e++Hw+l + +      + ++++v+sYVve++et++i
  CCD25260.1 227 DVGFTDLPPNASKAQMVAEYTVPNKTKLNGLRPMTMDDIDEVYNLFEKYQSRFDLIQTFTKDEFKHWFLGHVEksnqeqDVKKKIVFSYVVENKETNNI 325
                 79*******************************************************************977678888778999*************** PP

                 EEEEEEEE--EEETT-SS-SEEEEEEEEEEE............ECCC..TTHHHHHHHHHHHHHHHHHHCTESEEEEESSTTGGGCTTTTT-EEEEEEE CS
       NMT_C  94 tDfvSFYslpstvlknpkhktlkaAYlfyya............stet..kklkkrlkeLvkdalilakkakfDvfnaltlmdnklfleelkFgagdgkL 178
                 tDf+SFYslp+++lknp++k+l + Yl+yya               +  kkl+krl eL++dalilak+a++Dvfnalt +dn+lfl++lkFgagdg+L
  CCD25260.1 326 TDFFSFYSLPFSILKNPTYKELGIGYLYYYAtdadfefndrfsP--EatKKLRKRLDELISDALILAKQANMDVFNALTSQDNTLFLDDLKFGAGDGFL 422
                 *******************************6666666655543..04588999********************************************* PP

                 EEEEETEEE.-..-SB-CCGSB...TT..BEXX CS
       NMT_C 179 nYYLyNyrvapiaggvkeekele..ekkgvGvv 209
                 n+Y++Ny++ p++gg+ke+k+ +  ++++vGvv
  CCD25260.1 423 NFYVFNYKAFPVTGGLKEDKSYDveKRSNVGVV 455
                 *******************9999756666**98 PP

>> NMT  Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.3   0.1   2.2e-79   7.8e-76       1     160 []      54     213 ..      54     213 .. 0.99
   2 ?   -1.2   0.1      0.46   1.7e+03      23      47 ..     292     316 ..     245     345 .. 0.63

  Alignments for each domain:
  == domain 1  score: 253.3 bits;  conditional E-value: 2.2e-79
                 ESS----GGGS-SS----STTEEEEE--TTSHHHHHHHHHHHHHHSSCTTTSTEEE---HHHHHHHCTSTT--GGGEEEEEETTTTEEEEEEEEEEEEE CS
         NMT   1 pieeskkveevrkeplklpkgfewvtvdledeeelkevyelLsenYvedddamfrfkyskeflkWalkppgykkewhvgvrvkkskkLvafisaipvkl 99 
                 pi+++kk+e+++++p++l ++few++++++d+++l++v+ lL+enYved+da frf+y+ ef++Walk+pg+k+ewhvgvrvk+++kL+afisaip++l
  CCD25260.1  54 PIDATKKPEDIPDDPYPLLNEFEWCNINIDDSQQLQDVFVLLNENYVEDKDAEFRFNYTPEFFNWALKSPGWKNEWHVGVRVKQTQKLIAFISAIPISL 152
                 6999*********************************************************************************************** PP

                 EETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEEEEESSTSSSESEEE CS
         NMT 100 rvrkkvlklveinfLcvhkklRskrlapvlikEitRrvnlkgifqavytagvvlpkpvstC 160
                 ++r k++++veinfLcvhk+lRskrl+pvlikEitRrvn+++i+qa+ytag+vlp+pvstC
  CCD25260.1 153 QIRGKTITSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKHDIWQALYTAGIVLPSPVSTC 213
                 ************************************************************9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.46
                 EEEE--TTSHHHHHHHHHHHHHHSS CS
         NMT  23 ewvtvdledeeelkevyelLsenYv 47 
                 +w   ++e++++ ++v + +   Yv
  CCD25260.1 292 HWFLGHVEKSNQEQDVKKKIVFSYV 316
                 2444444555555555555555554 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.5e-07    0.0016      21     109 ..     109     197 ..      84     206 .. 0.85
   2 ?    1.7   0.0      0.07   2.5e+02       2      23 ..     257     278 ..     256     303 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4.5e-07
                     TT----H..HHHHHHHHHHTTSEEEEEEE..TTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT--E CS
  Acetyltransf_9  21 Fqdeespleeireyfrklleesrvlgaed..ngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemreegqpl 109
                     F+++++ +   ++ +++  ++++++g++     +l++ + ++p +l+++Gkt++   +   +v+ + r + +   L+++  +++++++++ 
      CCD25260.1 109 FNYTPEFF--NWALKSPGWKNEWHVGVRVkqTQKLIAFISAIPISLQIRGKTITSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKHDIWQ 197
                     44555554..79999***********99867999**********************************************99999987765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.07
                     EEEE-GGGHHHHHHHHHHHTT- CS
  Acetyltransf_9   2 irelteedldevlellkyaFqd 23 
                     +r++t +d+dev++l+++   +
      CCD25260.1 257 LRPMTMDDIDEVYNLFEKYQSR 278
                     699*************986655 PP

>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.4e-05      0.12      23      97 ..     110     199 ..      88     212 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.4e-05
                     H....HHHHHHSTTC...EEEE...EEETTEEEEEEEEEEEET....TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTE.SEE CS
  Acetyltransf_1  23 e....feesfsleae...gllv...aeedgeliGfisllkipd....ekggvayieslaVspeyrgkGlGsaLlealeerareegi.kki 97 
                          f++++ + ++   ++ v   ++  ++li+fis+ +i           ++i++l V+++ r k l   L++++ +r+ ++ i +++
      CCD25260.1 110 NytpeFFNWALKSPGwknEWHVgvrVKQTQKLIAFISAIPISLqirgKTITSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKHDIwQAL 199
                     1333355565554444545666656777799*****9999999888855667999************************99988776655 PP

>> Acetyltransf_3  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     6e-05      0.22       4      74 ..     257     334 ..     256     407 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 6e-05
  Acetyltransf_3   4 LrplteeDlealfelrsdpevmry.lpepltleeaeewlerawaeeseeeg......ygwaivlkdtgviGsv.glrdl 74 
                     Lrp+t +D++++++l++     r+ l ++ t +e ++w+  + ++ ++e++      + ++++ k+t+ i +  ++++l
      CCD25260.1 257 LRPMTMDDIDEVYNLFEK-YQSRFdLIQTFTKDEFKHWFLGHVEKSNQEQDvkkkivFSYVVENKETNNITDFfSFYSL 334
                     9************99884.456688667899*********996665555654556777799977888655444355554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.24s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3180.08
//
Query:       CCD25261.1  [L=581]
Description: hypothetical protein NDAI_0E04440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-07   32.3   7.0     0.0018   19.1   0.2    5.7  6  WD40         WD domain, G-beta repeat
      8e-05   21.5   1.7    0.00042   19.1   0.6    2.3  2  Nup160       Nucleoporin Nup120/160
     0.0031   17.9   0.1     0.0031   17.9   0.1    2.8  2  SUKH_6       SMI1-KNR4 cell-wall
  ------ inclusion threshold ------
       0.02   15.2   0.4        1.1    9.6   0.2    3.1  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
      0.022   14.1   0.0        3.7    6.7   0.0    2.3  2  SPATA9       Spermatogenesis-associated protein 9
      0.036   14.6   0.1       0.89   10.1   0.0    3.1  4  PQQ_3        PQQ-like domain
       0.11   12.5   0.2        4.3    7.4   0.0    2.7  2  PQQ          PQQ enzyme repeat
       0.14   12.1   0.5         13    5.9   0.0    2.8  2  Kelch_5      Kelch motif


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.086   1.9e+02      23      38 .]     234     249 ..     215     249 .. 0.82
   2 !   19.1   0.2     8e-07    0.0018       5      38 .]     284     320 ..     281     320 .. 0.77
   3 ?    1.6   0.1      0.27     6e+02      13      34 ..     339     361 ..     324     363 .. 0.60
   4 ?   -1.6   0.0       2.7     6e+03      20      35 ..     392     407 ..     382     410 .. 0.66
   5 ?    5.2   0.0     0.019        42       2      38 .]     418     457 ..     417     457 .. 0.72
   6 ?    1.5   0.0      0.28   6.3e+02      22      38 .]     498     513 ..     480     513 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.086
                 SEEEEEETTSEEEEEE CS
        WD40  23 awlasGsdDgtvriWd 38 
                 ++ a G+ D+ + iW+
  CCD25261.1 234 NFAAIGTFDPQIEIWN 249
                 44678988*******8 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 8e-07
                 EEEESS.SS.EEEEEEETTSSE...EEEEETTSEEEEEE CS
        WD40   5 rtltGH.ss.vtslafspdgaw...lasGsdDgtvriWd 38 
                  ++t+H ++ + sl  s+++++   las s D+tv++Wd
  CCD25261.1 284 EHITTHhTDaILSL--SHNKQFravLASTSADHTVKLWD 320
                 4555555555****..999999997888899*******9 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.27
                 EEEEEEET.TSSEEEEEETTSEE CS
        WD40  13 vtslafsp.dgawlasGsdDgtv 34 
                 v++  ++p +g+ l++G++D  v
  CCD25261.1 339 VSASEWHPtNGSILLTGGYDSRV 361
                 544444440455578**999876 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2.7
                 TTSSEEEEEETTSEEE CS
        WD40  20 pdgawlasGsdDgtvr 35 
                  + + +++G+d g+++
  CCD25261.1 392 ANENIILCGTDSGNIY 407
                 4445567899888886 PP

  == domain 5  score: 5.2 bits;  conditional E-value: 0.019
                 EEEEEEESS.SSEEEEE.EETTSSEEEEE..ETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtsla.fspdgawlasG..sdDgtvriWd 38 
                 ++++tl++H  +++ l+ +s    ++++G  +  + v++W+
  CCD25261.1 418 KPVWTLKAHdAGISTLStNSFIPGLMSTGamG-EKAVKLWK 457
                 7899*****77799995444444446788544.99999995 PP

  == domain 6  score: 1.5 bits;  conditional E-value: 0.28
                 SSEEEEEETTSEEEEEE CS
        WD40  22 gawlasGsdDgtvriWd 38 
                 g++++ G+ ++ +++Wd
  CCD25261.1 498 GTMVV-GGVNKGLKLWD 513
                 44455.999*******9 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.6   1.9e-07   0.00042     196     282 ..     270     352 ..     265     429 .. 0.75
   2 ?    0.5   0.0     0.079   1.8e+02     238     261 ..     505     535 ..     486     560 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.9e-07
                 --TTTT.TSS--SS---TT-ECEEEEET.......TTTEEEEEETT-EEEEEETTTTEEEEE.EE--.-SSSTTS--SSEESEEESSSSE CS
      Nup160 196 lsgllglladpsrrksgasvalsldvavavvei..gqtylfalsrdgkLrvWnlltgkclat.idllrdeeaqdessskstldpaessli 282
                 l gl + +++p+++++ +     +d++ + ++    +++l++ s d+++++W+l++g+++++  +         +++s+s+  p++ s++
  CCD25261.1 270 LAGLKKNKKKPKKQEHITT--HHTDAILSLSHNkqFRAVLASTSADHTVKLWDLNNGQTARSlASVH-----SGKNVSASEWHPTNGSIL 352
                 5556666666766666666..666666667766779*************************966666.....344444446688777765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.079
                 TT-EEEEEETTTTEEEEEEE--........- CS
      Nup160 238 rdgkLrvWnlltgkclatidll.......rd 261
                 +++ L++W++ ++++++    +       r 
  CCD25261.1 505 VNKGLKLWDVFSNRTVRKSFAKelkdvqaRA 535
                 6899***********9986665454555533 PP

>> SUKH_6  SMI1-KNR4 cell-wall
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   1.7       1.2   2.7e+03       3      65 ..      26      89 ..      24     173 .. 0.53
   2 !   17.9   0.1   1.4e-06    0.0031      59     117 ..     372     438 ..     344     439 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.2
      SUKH_6  3 eiaeaEkelgvkLPedYkeflkeynggefggnefigsseesivndaleillde.gkeeeksefd 65
                e+a +E+  +++L++   e+  e  + + +++++ ++s+++ +  + +  +d+  ke + +++d
  CCD25261.1 26 ELARIENLANLNLDDVKAELEGEAAAASAEEDDLAIESKHDANVLKNQLEVDDdMKEYDLENHD 89
                5666666666666665555555555555566665555555544332222222202222222222 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 1.4e-06
      SUKH_6  59 eeksefd.......eeedrlpenllpiaedgggdlicldy.eendepkvvfwdseedgevekvadsF 117
                 +e s++        +e+  + ++ ++++++++g+++ +d+ +++++ +v+ ++ ++ g  ++ ++sF
  CCD25261.1 372 KEMSKYWsvmsgeeIECTTFANENIILCGTDSGNIYSFDIrNNENSKPVWTLKAHDAGISTLSTNSF 438
                 2222333567777799999*********************888888999999999999999999998 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2     0.002       4.6      40      89 ..     293     344 ..     282     345 .. 0.76
   2 ?    9.6   0.2   0.00048       1.1      11      89 ..     308     391 ..     306     394 .. 0.73
   3 ?    0.8   0.0      0.27   6.1e+02      36      80 ..     381     427 ..     365     435 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.002
  ANAPC4_WD40  40 evrsLaWkpd.gklLavaysdgevrlldaesgkvvhsl.svksekavtclgW 89 
                   + sL+ +++   +La   +d +v+l d ++g++ +sl sv+s k+v+  +W
   CCD25261.1 293 AILSLSHNKQfRAVLASTSADHTVKLWDLNNGQTARSLaSVHSGKNVSASEW 344
                  5566666554145899******************998735677778888777 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00048
  ANAPC4_WD40  11 AlatedgellvfRl.ngqrvwtleedkedsevrsLaWkp.dgklLavaysdgevrllda...esgkvvhslsvksekavtclgW 89 
                  A  ++d  + +  l ngq   +l++ +++++v++ +W+p +g++L  +  d++v l d+   +++++ + +sv s +++ c ++
   CCD25261.1 308 ASTSADHTVKLWDLnNGQTARSLASVHSGKNVSASEWHPtNGSILLTGGYDSRVALSDVrisNEKEMSKYWSVMSGEEIECTTF 391
                  556667777777774677777888889999999999997579999999999999999973323555666667777777777766 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.27
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrllda...esgkvvhslsvks 80 
                   +++e+++  +  +++++  +++ g++  +d+   e+ k v +l++++
   CCD25261.1 381 MSGEEIECTTFA-NENIILCGTDSGNIYSFDIrnnENSKPVWTLKAHD 427
                  566677777775.45666667777777666551114555555555555 PP

>> SPATA9  Spermatogenesis-associated protein 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0059        13     199     231 ..     112     144 ..      87     159 .. 0.84
   2 ?    6.7   0.0    0.0017       3.7      41     120 ..     293     371 ..     283     397 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0059
      SPATA9 199 sepefpegeikakpyrslpekpdsisqepklpa 231
                 s+ +f ege    py slp + d++ ++  l  
  CCD25261.1 112 SDVKFHEGEDGQDPYISLPTQEDTVEEKQELQV 144
                 5678*********************99877655 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0017
      SPATA9  41 tilrlsqsnqkkeeeqksskikkavalakinrgallqglssisrssksvakllrprlarlllelraisrkllrevelkkk 120
                 +il ls   q +    ++    ++v l  +n+g+  ++l s+   +++ a+  +p    +ll     sr +l +v+++++
  CCD25261.1 293 AILSLSHNKQFRAVLAST-SADHTVKLWDLNNGQTARSLASVHSGKNVSASEWHPTNGSILLTGGYDSRVALSDVRISNE 371
                 689999988887766655.567889*************************************************999763 PP

>> PQQ_3  PQQ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       5.5   1.2e+04      21      33 ..     349     361 ..     346     362 .. 0.75
   2 ?   10.1   0.0    0.0004      0.89       5      39 ..     378     412 ..     375     413 .. 0.88
   3 ?   -2.5   0.0       3.7   8.4e+03       2      17 ..     418     433 ..     418     437 .. 0.80
   4 ?   -0.1   0.0      0.65   1.5e+03       4      14 ..     455     465 ..     454     478 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.5
       PQQ_3  21 gglvyvgtgdGtl 33 
                 g ++ +g++d ++
  CCD25261.1 349 GSILLTGGYDSRV 361
                 6678899999876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0004
       PQQ_3   5 WsvqlpgpvnsspavdgglvyvgtgdGtlyAlDae 39 
                 Wsv  ++++ +++ + ++++ +gt+ G++y++D +
  CCD25261.1 378 WSVMSGEEIECTTFANENIILCGTDSGNIYSFDIR 412
                 88888889999888999****************98 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 3.7
       PQQ_3   2 evlWsvqlpgpvnssp 17 
                 +++W+ + ++++ s++
  CCD25261.1 418 KPVWTLKAHDAGISTL 433
                 578****999887876 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.65
       PQQ_3   4 lWsvqlpgpvn 14 
                 lW+++l++ vn
  CCD25261.1 455 LWKFPLGDGVN 465
                 8******9887 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0019       4.3       2      21 ..     396     415 ..     395     416 .. 0.80
   2 ?    2.2   0.0     0.089     2e+02      22      34 ..     454     466 ..     454     470 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0019
                 EEEEEETTSEEEEEETTTCC CS
         PQQ   2 vvylgsadGylyAlDadTGk 21 
                  + +g++ G++y +D+++++
  CCD25261.1 396 IILCGTDSGNIYSFDIRNNE 415
                 34555***********9976 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.089
                 EEEEEESSSCGSS CS
         PQQ  22 vlWrfktggpvls 34 
                 +lW+f++g+ v++
  CCD25261.1 454 KLWKFPLGDGVNN 466
                 59*******9987 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2     0.039        87      26      38 ..     157     169 ..     153     169 .. 0.88
   2 ?    5.9   0.0    0.0057        13      14      27 ..     348     365 ..     331     371 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.039
     Kelch_5  26 rdgsvsddvyvLd 38 
                 +d++++ dvyv+d
  CCD25261.1 157 EDDISYLDVYVYD 169
                 58999*******8 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0057
     Kelch_5  14 sekiYvyGGkvg....rd 27 
                 +++i+++GG+++    +d
  CCD25261.1 348 NGSILLTGGYDSrvalSD 365
                 588********8444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.39
# Mc/sec: 4488.32
//
Query:       CCD25262.1  [L=221]
Description: hypothetical protein NDAI_0E04450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-73  244.8   0.5    8.8e-73  244.6   0.5    1.0  1  POC1      POC1 chaperone


Domain annotation for each model (and alignments):
>> POC1  POC1 chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.6   0.5   4.9e-77   8.8e-73      56     273 .]       1     221 []       1     221 [] 0.91

  Alignments for each domain:
  == domain 1  score: 244.6 bits;  conditional E-value: 4.9e-77
                 GGGGS-TTTTT-EEE--EEE----------------------------..--------------B--EEESSSEEEEEE---TTT--HHHHHHHHHHHH CS
        POC1  56 mdplfpkkllslekiaeikttlkvdesslvqeseehswnyeenfpnev..dfkrdsaderllsfsfpiyaledtliiiieenfikisaifsnliarsvi 152
                 m+plfp++ll l ++++i ttl+++  +l+++ ++hswny+enfpne     k+  + e+ + f+fpi+a++ tl+i+i+enf+kis+ifsn+i++   
  CCD25262.1   1 MNPLFPEDLLPLVSVSNISTTLTLNPDQLMGNEGKHSWNYNENFPNEFdpSDKDMKSSEKSYDFNFPIFAIDRTLVISIQENFLKISPIFSNVISQT-- 97 
                 9***********************************************544566678899***********************************99.. PP

                 HHHHTT--EE..EEE.EEETT-SS-EEEESS-----TT--B-SHHHHHHHHHTTTT--..EEEEEEE-BSSTTS-B--HHHHHHHHHHHH...HHHT-- CS
        POC1 153 sqlaqlspdikdivi.gtsdkiaelkkltedecslePPefitGfigsvltqlpskelk.vfkgivaPseGPiGfeklsldvvdelvdlcs...klldik 246
                   l+q +p  k+i i gtsd++a ++k++++  +lePPef+tGfigs++t+l   + k  f +i++PseGP Gfekl+l  +++l+d+ +   ++l+i+
  CCD25262.1  98 --LVQALPLNKEILIlGTSDRVAVMRKISNEIDTLEPPEFVTGFIGSLITELNLHNAKyNFDAIIVPSEGPTGFEKLNLTIMQDLIDIFKnewNYLNID 194
                 ..66666666666666*************999*******************9655554239***************************973334799** PP

                 TTHHHHHHHHHHHHSGGGHHHHTTSEE CS
        POC1 247 pseyseeclrlWrldeaaigaqsGlyi 273
                 +  y+e+c+r W+l +aaigaqsGlyi
  CCD25262.1 195 SKVYTEQCYRHWKLAGAAIGAQSGLYI 221
                 **************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       350  (0.0195214); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1819.29
//
Query:       CCD25263.1  [L=106]
Description: hypothetical protein NDAI_0E04460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.4e-25   87.7   8.8    4.7e-25   87.6   8.8    1.0  1  Prefoldin_2     Prefoldin subunit
     0.0052   17.0   7.5       0.25   11.6   7.5    2.1  1  DUF5082         Domain of unknown function (DUF5082)
     0.0055   16.6   8.6       0.16   12.0   1.3    2.1  2  Sec2p           GDP/GTP exchange factor Sec2p
      0.006   16.6   2.4      0.006   16.6   2.4    1.8  2  MIP-T3_C        Microtubule-binding protein MIP-T3 C-terminal
      0.009   16.1   8.3     0.0098   16.0   8.3    1.0  1  UPF0242         Uncharacterised protein family (UPF0242) N-te
  ------ inclusion threshold ------
      0.021   14.8   1.8      0.035   14.1   1.7    1.6  1  DUF1732         Domain of unknown function (DUF1732)
      0.026   14.5   0.0       0.06   13.4   0.0    1.6  1  DUF1192         Protein of unknown function (DUF1192)
      0.028   14.3   4.8      0.033   14.1   0.3    2.0  2  Prefoldin       Prefoldin subunit
      0.032   14.3   4.2          2    8.6   0.2    2.2  2  BRE1            BRE1 E3 ubiquitin ligase
      0.049   12.4   6.1       0.52    9.0   5.1    1.9  1  HAUS5           HAUS augmin-like complex subunit 5
      0.053   13.5   7.1       0.79    9.7   0.7    2.1  2  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
      0.095   12.9   5.5       0.21   11.7   0.3    2.5  2  JIP_LZII        JNK-interacting protein  leucine zipper II
       0.23   11.5   3.4       0.35   10.9   0.7    2.1  2  Bcr-Abl_Oligo   Bcr-Abl oncoprotein oligomerisation domain
       0.29   11.4   7.8        3.5    7.9   1.2    2.1  2  Spc24           Spc24 subunit of Ndc80
       0.41   10.3   5.0        0.1   12.3   1.2    1.7  2  Med4            Vitamin-D-receptor interacting Mediator subun
       0.51   10.9   8.2        3.7    8.1   8.2    1.9  1  APG6_N          Apg6 coiled-coil region
        1.2    9.3   5.0        5.6    7.1   0.3    2.4  2  DUF5595         Domain of unknown function (DUF5595)
        1.2    8.3   5.4       0.76    9.0   1.2    1.9  2  TMPIT           TMPIT-like protein


Domain annotation for each model (and alignments):
>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   8.8   4.7e-28   4.7e-25       5     102 ..       7     104 ..       3     106 .] 0.97

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 4.7e-28
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC CS
  Prefoldin_2   5 nkfqqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkeelqkk 102
                   k+q lq +l++l + +++letql+e++ v+ee+++l+++ +vykl G+vl+ +d+ee+++++++r+e++++ei+++e++++++++el+++++e+ k+
   CCD25263.1   7 SKYQVLQGELEDLIMARQKLETQLQENKIVIEEFNQLPSESQVYKLTGNVLLPVDQEEAHSNVDKRLEFIQTEISRCENNIKNKQQELDNVRSEILKM 104
                  59*******************************************************************************************99776 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   7.5   0.00025      0.25      23     121 ..      13     104 ..       1     106 [] 0.57

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00025
     DUF5082  23 eekIerLkeaktklsdekeslkqkkkklekplnssesWkGkeennydgirsnlessyq..tyvdkldelidaieeEIerLenqiseaqgvldtlqsqln 119
                 +  +e L  a++kl+++ ++ k  +++ ++   +s         +++    n+   ++  + ++++d+    i++EI+r en i+++q+ ld+  s++ 
  CCD25263.1  13 QGELEDLIMARQKLETQLQENKIVIEEFNQLPSES---------QVYKLTGNVLLPVDqeEAHSNVDKRLEFIQTEISRCENNIKNKQQELDNVRSEIL 102
                 44444444444444444333333333333333333.........3333333444433311467889999999999999999999999999999999986 PP

     DUF5082 120 sl 121
                 ++
  CCD25263.1 103 KM 104
                 66 PP

>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   1.0    0.0011       1.1      48      88 ..       5      45 ..       2      49 .. 0.84
   2 !   12.0   1.3   0.00016      0.16      42      84 ..      63     105 ..      55     106 .] 0.90

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0011
                HHHHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTTXXXXXX CS
       Sec2p 48 lekkneklkeqLkeketlleslqeqLkeLkevlekmeeese 88
                l  k + l+ +L++  +  ++l++qL+e k v+e++++  +
  CCD25263.1  5 LPSKYQVLQGELEDLIMARQKLETQLQENKIVIEEFNQLPS 45
                667889999999999999999***********999988665 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00016
                 HHHHHHHHHHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTTXX CS
       Sec2p  42 rkekealekkneklkeqLkeketlleslqeqLkeLkevlekme 84 
                 ++ + +++k+ e ++++++ +e+ ++++q++L + ++ + km 
  CCD25263.1  63 EEAHSNVDKRLEFIQTEISRCENNIKNKQQELDNVRSEILKMR 105
                 567889******************************9998886 PP

>> MIP-T3_C  Microtubule-binding protein MIP-T3 C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2       0.7     7e+02     112     124 ..      23      35 ..       5      56 .. 0.57
   2 !   16.6   2.4     6e-06     0.006     102     142 ..      63     103 ..      58     106 .] 0.90

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.7
    MIP-T3_C 112 leplkaqlaelee 124
                  ++l+ ql+e + 
  CCD25263.1  23 RQKLETQLQENKI 35 
                 2333333333333 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 6e-06
    MIP-T3_C 102 aeerrateealeplkaqlaeleeaIkdqkekisnvrakilk 142
                 +e+++  ++ le ++ +++  e++Ik+++++++nvr++ilk
  CCD25263.1  63 EEAHSNVDKRLEFIQTEISRCENNIKNKQQELDNVRSEILK 103
                 56677889999*****************************8 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   8.3   9.8e-06    0.0098      67     167 ..       2     103 ..       1     106 [] 0.92

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.8e-06
     UPF0242  67 kskleekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlk.eenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsv 164
                 +s+l++k ++l+ + e+l   +++le   +e++   ee+++  +e++ +k   n  L +  e++  ++++ + +++ ++ + ++ +++ q+++ + rs+
  CCD25263.1   2 ASNLPSKYQVLQGELEDLIMARQKLETQLQENKIVIEEFNQLPSESQVYKlTGNVLLPVDQEEAHSNVDKRLEFIQTEISRCENNIKNKQQELDNVRSE 100
                 57899999****999*********************************994568899999999999999999*************************99 PP

     UPF0242 165 lek 167
                 + k
  CCD25263.1 101 ILK 103
                 865 PP

>> DUF1732  Domain of unknown function (DUF1732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.7   3.5e-05     0.035      34      67 ..      64     101 ..      17     106 .] 0.72

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.5e-05
     DUF1732  34 e...svGrkLdFllQElnReanTigskandle.itklv 67 
                 e   +v ++L+F+  E++R  n i +k+++l+ + + +
  CCD25263.1  64 EahsNVDKRLEFIQTEISRCENNIKNKQQELDnVRSEI 101
                 1444899*********************9975144444 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0     6e-05      0.06      26      51 ..      70      95 ..      66      99 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6e-05
     DUF1192 26 eerIalLeaEIaRleaaiakkkasra 51
                ++r +  + EI R+e+ i++k++  +
  CCD25263.1 70 DKRLEFIQTEISRCENNIKNKQQELD 95
                789999***************98765 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.6      0.19   1.9e+02      94     117 ..      10      33 ..       2      43 .. 0.67
   2 ?   14.1   0.3   3.3e-05     0.033      66     113 ..      53     100 ..      44     105 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.19
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  94 ekleeeleklkdqittleanlaql 117
                 ++l+ ele+l  + ++le +l+++
  CCD25263.1  10 QVLQGELEDLIMARQKLETQLQEN 33 
                 566666666666666666666654 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 3.3e-05
                 ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  66 GagyyveksleeAiellkkkleelekqlekleeeleklkdqittlean 113
                   ++ + ++ eeA   ++k+le ++  +  +e++++ +++++++++ +
  CCD25263.1  53 TGNVLLPVDQEEAHSNVDKRLEFIQTEISRCENNIKNKQQELDNVRSE 100
                 5688999999********************************999876 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.2     0.002         2      47      81 ..       9      45 ..       6      55 .. 0.69
   2 ?    7.5   0.5    0.0042       4.2       1      30 [.      76     105 ..      63     106 .] 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.002
        BRE1 47 yfaamrskdalenelkkLnkllsKsselieqLke..l 81
                y  ++ + ++l +  +kL ++l+ ++ +ie++++  +
  CCD25263.1  9 YQVLQGELEDLIMARQKLETQLQENKIVIEEFNQlpS 45
                5556666677777788888888888888888877444 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0042
        BRE1   1 lqkELvklekafeelseqlskkvkeltile 30 
                 +q+E+ ++e+ +++ +++l++  +e+  + 
  CCD25263.1  76 IQTEISRCENNIKNKQQELDNVRSEILKMR 105
                 589999999999999999999888887765 PP

>> HAUS5  HAUS augmin-like complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.1   0.00052      0.52     391     471 ..      15      95 ..       5      97 .. 0.69

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00052
       HAUS5 391 rLeklaaerkealrsLqkkwkkIldFrarvseleeiiraLikansaakaeleqqpaev...refvqekliPafeaVveasnslk 471
                 +Le+l+  r++++++Lq+++  I++F+++ se +   +  + +n       e+ +++v    ef+q+++ +  ++++++ ++l 
  CCD25263.1  15 ELEDLIMARQKLETQLQENKIVIEEFNQLPSESQVY-K--LTGNVLLPVDQEEAHSNVdkrLEFIQTEISRCENNIKNKQQELD 95 
                 799**************************9998743.2..34444444333334433311136777777777777776666665 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.7    0.0008      0.79      63     104 ..       4      45 ..       1      52 [. 0.87
   2 ?    7.8   0.8    0.0031       3.1      52      85 ..      71     104 ..      56     106 .] 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0008
  CENP-F_leu_zip  63 elaeelreleldLvalrsekeeLekelqkkqervseLeslns 104
                     +l ++ + l+ +L++l   +++Le +lq+++  ++e ++l s
      CCD25263.1   4 NLPSKYQVLQGELEDLIMARQKLETQLQENKIVIEEFNQLPS 45 
                     57788999***********************99999988766 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0031
  CENP-F_leu_zip  52 aevetlkeeieelaeelreleldLvalrsekeeL 85 
                     + +e +++ei + +++ ++ +++L+++rse  ++
      CCD25263.1  71 KRLEFIQTEISRCENNIKNKQQELDNVRSEILKM 104
                     4455688899999999999999999999987666 PP

>> JIP_LZII  JNK-interacting protein  leucine zipper II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   0.00022      0.21      38      65 ..       5      32 ..       3      38 .. 0.92
   2 ?    3.3   0.6     0.095        95      48      70 ..      72      94 ..      61     104 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
    JIP_LZII 38 LtsereiLreEleslqkakerlesrike 65
                L s +++L+ Ele l +a+++le++++e
  CCD25263.1  5 LPSKYQVLQGELEDLIMARQKLETQLQE 32
                678899*******************998 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.095
    JIP_LZII 48 EleslqkakerlesrikelEeel 70
                 le +q++ +r+e+ ik+ ++el
  CCD25263.1 72 RLEFIQTEISRCENNIKNKQQEL 94
                45666777777777777777776 PP

>> Bcr-Abl_Oligo  Bcr-Abl oncoprotein oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.35   3.5e+02      29      52 ..      12      35 ..       4      50 .. 0.80
   2 ?   10.9   0.7   0.00036      0.35      26      52 ..      73      99 ..      61     105 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.35
  Bcr-Abl_Oligo 29 ieqeLerCkaslrrLekelneekf 52
                   ++ eLe      ++Le +l+e+k 
     CCD25263.1 12 LQGELEDLIMARQKLETQLQENKI 35
                   677888888888899999988875 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00036
  Bcr-Abl_Oligo 26 vedieqeLerCkaslrrLekelneekf 52
                   +e i+ e+ rC +++++ ++el + + 
     CCD25263.1 73 LEFIQTEISRCENNIKNKQQELDNVRS 99
                   56799****************988665 PP

>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   1.0    0.0039       3.8      14      52 ..       3      42 ..       1      63 [. 0.66
   2 ?    7.9   1.2    0.0035       3.5       8      40 ..      68     100 ..      60     106 .] 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0039
       Spc24 14 sdleselesleselaelkeeleeleeeseekeserve.de 52
                s+l s+ + l+ el++l    ++le++ +e++  ++e ++
  CCD25263.1  3 SNLPSKYQVLQGELEDLIMARQKLETQLQENKIVIEEfNQ 42
                5677778888888888888888888888883333333233 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0035
       Spc24   8 riakelsdleselesleselaelkeeleeleee 40 
                 ++ k l+ +++e++++e++ +++++el+++ +e
  CCD25263.1  68 NVDKRLEFIQTEISRCENNIKNKQQELDNVRSE 100
                 566777777777777777777777777776654 PP

>> Med4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.2   1.2e+03      31      46 ..      16      31 ..       7      46 .. 0.56
   2 ?   12.3   1.2    0.0001       0.1      19      59 ..      61     101 ..      59     105 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.2
        Med4 31 ilqLraeveslDekik 46
                ++ L    ++l+++++
  CCD25263.1 16 LEDLIMARQKLETQLQ 31
                3333333333333333 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.0001
        Med4  19 keleehqknearilqLraeveslDekikeivksLkeyekeL 59 
                 ++ e h +  +r++ ++ e++  ++ ik+ +++L ++++e+
  CCD25263.1  61 DQEEAHSNVDKRLEFIQTEISRCENNIKNKQQELDNVRSEI 101
                 66789**********************************98 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.2    0.0037       3.7      19      87 ..      10     104 ..       3     106 .] 0.75

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0037
      APG6_N  19 eqaekerdaYeeflkklkkekkeeek...........................qdeeleeleeeleklekeeeelleeLkelekereeleaelaal 87 
                 + ++ e +++    +kl+++ +e +k                           q+e + + +++le ++ e ++ ++++k+ ++e +++++e+ + 
  CCD25263.1  10 QVLQGELEDLIMARQKLETQLQE-NKivieefnqlpsesqvykltgnvllpvdQEEAHSNVDKRLEFIQTEISRCENNIKNKQQELDNVRSEILKM 104
                 55555555555555555555333.234666666678888888888899****999999*********************************99775 PP

>> DUF5595  Domain of unknown function (DUF5595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.3    0.0056       5.6      40      69 ..       3      32 ..       1      46 [. 0.74
   2 ?    4.3   0.7     0.044        43      36      70 ..      63      97 ..      59     100 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0056
     DUF5595 40 skLkelynvdeaqlesleeeekrLeeEier 69
                s L  +y+v + +le+l + +++Le+ +++
  CCD25263.1  3 SNLPSKYQVLQGELEDLIMARQKLETQLQE 32
                567777888888888888888888776654 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.044
     DUF5595 36 aeleskLkelynvdeaqlesleeeekrLeeEierl 70
                +e +s  ++ ++++++++ + e + k  ++E++++
  CCD25263.1 63 EEAHSNVDKRLEFIQTEISRCENNIKNKQQELDNV 97
                67899999999***********9999999999876 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.2      0.11   1.1e+02      64      96 ..      19      50 ..       1      60 [. 0.70
   2 ?    9.0   1.2   0.00077      0.76      15      57 ..      63     105 ..      59     106 .] 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.11
       TMPIT 64 eeeeveelkeelkerkkvlkevesllpkkngly 96
                   + ++l+++l+e k v++e ++l p+++ +y
  CCD25263.1 19 LIMARQKLETQLQENKIVIEEFNQL-PSESQVY 50
                4456789999999999999998875.7776666 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00077
       TMPIT  15 eetakeykqkleelsklqskcskeikkqkkrlkelksslkklk 57 
                 ee+++++ ++le +++ +s+c ++ik+++++l +++s++ k++
  CCD25263.1  63 EEAHSNVDKRLEFIQTEISRCENNIKNKQQELDNVRSEILKMR 105
                 68899999***************************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1351  (0.0753528); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 752.17
//
Query:       CCD25264.1  [L=264]
Description: hypothetical protein NDAI_0E04470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-20   71.6   0.2    8.5e-20   70.3   0.0    1.8  2  COQ9      COQ9
  ------ inclusion threshold ------
       0.17   12.3   0.0         15    6.0   0.0    2.4  2  Jag_N     Jag N-terminus


Domain annotation for each model (and alignments):
>> COQ9  COQ9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.3   0.0   9.5e-24   8.5e-20       4      76 ..     164     237 ..     161     238 .. 0.95
   2 ?   -2.8   0.0      0.61   5.5e+03      28      35 ..     244     251 ..     241     258 .. 0.70

  Alignments for each domain:
  == domain 1  score: 70.3 bits;  conditional E-value: 9.5e-24
        COQ9   4 aptslrelarlaDdiwraagDks.tDfnwYtkRatLsavyastelymlqdksedfedtwaFldrriddvmalek 76 
                 ++ +l el++l+Dd+++++++k+ +D++wY+kR+ +s+ y+s++lym++++ e+f +t +F +++++++m+l++
  CCD25264.1 164 FNVALPELFNLSDDLIYFSNEKDhHDMAWYAKRLGVSCAYVSSKLYMVKNNGENFDKTIDFAKDKLHRIMNLGE 237
                 67899*****************989**********************************************987 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.61
        COQ9  28 DfnwYtkR 35 
                  ++wYt  
  CCD25264.1 244 EYAWYTLM 251
                 58999955 PP

>> Jag_N  Jag N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0017        15       4      31 ..      22      49 ..      19      54 .. 0.91
   2 ?    3.7   0.0    0.0086        77       7      22 ..      62      77 ..      61      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0017
       Jag_N  4 kTveeAiekAlkeLgvsrdeveieVlee 31
                 T+e A ++ l  L   +d v++++l++
  CCD25264.1 22 NTLEYAKAATLSPLTYNKDSVQYKILSN 49
                699**********************986 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0086
       Jag_N  7 eeAiekAlkeLgvsrd 22
                +eAi+  l+eL++s+ 
  CCD25264.1 62 DEAITSSLNELDLSSS 77
                9***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       694  (0.0387082); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2025.63
//
Query:       CCD25265.1  [L=443]
Description: hypothetical protein NDAI_0E04480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-18   65.1   3.4    5.4e-17   61.6   1.1    2.4  2  zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
  ------ inclusion threshold ------
       0.07   12.9   0.7       0.28   11.0   0.3    2.2  2  YL1_C     YL1 nuclear protein C-terminal domain


Domain annotation for each model (and alignments):
>> zf-Mss51  Zinc-finger of mitochondrial splicing suppressor 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   1.1     6e-21   5.4e-17       2      57 .]      93     143 ..      91     143 .. 0.97
   2 ?    3.0   0.0     0.013   1.1e+02      23      38 ..     347     362 ..     345     370 .. 0.79

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 6e-21
    zf-Mss51   2 CPvpkhkqtapkhvdfeCpdCGiptycseehwedDyeahle.icdtLrqvnedeHDL 57 
                 CPv+      +k+++++Cp +Gipt++s+++we D+++h + i++ L++vn +eHDL
  CCD25265.1  93 CPVT------NKEINYTCPISGIPTHHSKNAWEMDENYHSNkIYEILKKVNIYEHDL 143
                 9999......89***************************999**************9 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.013
    zf-Mss51  23 GiptycseehwedDye 38 
                 G++   + ehw++D+ 
  CCD25265.1 347 GFSAIETTEHWMNDTM 362
                 66667789******97 PP

>> YL1_C  YL1 nuclear protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.46   4.1e+03       4      12 ..       6      14 ..       5      15 .. 0.86
   2 ?   11.0   0.3   3.1e-05      0.28       2      19 ..      93     110 ..      92     111 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.46
       YL1_C  4 ITGlpAkYr 12
                ++ lp+ Yr
  CCD25265.1  6 VSRLPTAYR 14
                799*****8 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 3.1e-05
       YL1_C   2 CdITGlpAkYrDPkTgLp 19 
                 C++T+++ +Y++P +g+p
  CCD25265.1  93 CPVTNKEINYTCPISGIP 110
                 ****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3499.12
//
Query:       CCD25266.1  [L=151]
Description: hypothetical protein NDAI_0E04490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-12   46.0  24.0    6.1e-12   45.2  24.0    1.4  1  DUF1713     Mitochondrial domain of unknown function (DUF1713
  ------ inclusion threshold ------
      0.015   15.3   4.5      0.032   14.3   2.8    2.2  2  U3_assoc_6  U3 small nucleolar RNA-associated protein 6


Domain annotation for each model (and alignments):
>> DUF1713  Mitochondrial domain of unknown function (DUF1713)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2  24.0   6.9e-16   6.1e-12       1      32 [.     117     148 ..     117     149 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.2 bits;  conditional E-value: 6.9e-16
     DUF1713   1 adSVlrKRrkKMkKHKyKKlrKrtRflrrklg 32 
                 +dSVlrKRrkKMkKHK++K+rKr+R+++rkl 
  CCD25266.1 117 LDSVLRKRRKKMKKHKLRKRRKRQRAEKRKLS 148
                 59****************************96 PP

>> U3_assoc_6  U3 small nucleolar RNA-associated protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.093   8.3e+02       3      28 ..      43      68 ..      42      70 .. 0.85
   2 ?   14.3   2.8   3.5e-06     0.032      40      70 ..     101     136 ..      80     149 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.093
  U3_assoc_6  3 qmlpeledleekglFtkeEikeIvkk 28
                 m+  ++ l ++ l++ + i e+ +k
  CCD25266.1 43 TMISTMMNLSKSRLINSNDIFELSSK 68
                69999999999999999999888776 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 3.5e-06
  U3_assoc_6  40 gkkkedflkYieyElnLeklrkkRrkrlkl.....k 70 
                 +  ++d+ +  + E+ L+ +++kRrk++k      +
  CCD25266.1 101 QVVINDVTNLSNVEMHLDSVLRKRRKKMKKhklrkR 136
                 456799999********************9554321 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1719  (0.0958782); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1099.24
//
Query:       CCD25267.1  [L=327]
Description: hypothetical protein NDAI_0E04500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.4e-13   50.4   5.9    3.5e-11   43.3   5.9    2.8  1  Heme_oxygenase  Heme oxygenase
      0.006   17.0   1.1      0.006   17.0   1.1    2.0  2  MRP-S28         Mitochondrial ribosomal subunit protein


Domain annotation for each model (and alignments):
>> Heme_oxygenase  Heme oxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   5.9   3.9e-15   3.5e-11       2     204 ..      17     268 ..      16     269 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 3.9e-15
                     SHHHHHHHHTHHHHHHHHTSHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHH............HHCTTSTTCGGGS-GGG--HHHHHHHHHH CS
  Heme_oxygenase   2 alakeLreaTkdvHneaenlvfvkeflkgsvdkeaYkkllanlyelykalEeel............eenkdspviapilfpeLhRkaaLerdlay 84 
                     ala++++  T+d+Hn++++   +k + +++   + Y++ +   y++++a+E e+            e+++   ++++i ++e++R+++L +dl+ 
      CCD25267.1  17 ALANRINFHTRDAHNKIDKKMTLKLAVALRHG-DIYRQGILTYYYIFQAVESEInyllsfntdatkEQKRTGSLLSKIWLTEFNRTDKLFKDLKL 110
                     6999**********************988765.689998888**********984444443333333566778999******************* PP

                     HHSTTHHHHS---HHHHHHHHHHHH...............HHHH-GGGHHHHHHHHHHHHHHHHHHHHH......................HHHH CS
  Heme_oxygenase  85 lygsdwrkdieispavqkyverlek...............iaaeepellvAhaYtrylgdLSGGqllkk......................iaar 142
                     ly++++++d  +++  +++ + +++                 +++p  ++A++ + yl+   GG ++k                        a +
      CCD25267.1 111 LYSDRFQNDQDLLNFINEEFKLIHQnknsklyqfvnfihiSIQTNPCCILAYCHVLYLALFAGGKIIKSkiyknlgflpnfnhlsskelfnNATN 205
                     ********9998887777766666511111111111111134559999*********************9*************999996654444 PP

                     HHT-SSSSSSGGGGH-TTSSSHHHHHHHHHHH..HH.CS---HHHHHHHHHHHHHHHHHHHHHHH CS
  Heme_oxygenase 143 alelpeeceatafyefesisdrkvfkqeYrea..Ld.slelddearaavveeAreaFrlnievvr 204
                       ++ e+    ++   +sis++++ k +++ +  L+ + +l+++++  ++e A++ F+ n e ++
      CCD25267.1 206 FFQFTEN--SDSLEGINSISNENKLKLKFKRNfeLNtRSNLNENEKLTIIEIAKQIFQWNLESME 268
                     4555555..77888888888877777777765114535799*******************99876 PP

>> MRP-S28  Mitochondrial ribosomal subunit protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.1   6.6e-07     0.006      13      89 ..      73     149 ..      62     156 .. 0.86
   2 ?   -1.8   0.0      0.44   3.9e+03      26      42 ..     225     246 ..     199     282 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.6e-07
     MRP-S28  13 frytsylgeehpasrkvvlevkvadLkleekqkhklklLagprynpetdviklsserfesaaqNkrylsdilekLlk 89 
                 ++++++ ++e+++      ++ +++ + ++k  + lklL  +r++ ++d++ +  e f+  +qNk++  +++ + ++
  CCD25267.1  73 LSFNTDATKEQKRTGSLLSKIWLTEFNRTDKLFKDLKLLYSDRFQNDQDLLNFINEEFKLIHQNKNSKLYQFVNFIH 149
                 578888888888888888889999999999999*********************************99988877776 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.44
     MRP-S28  26 srkvvlevkva.dL....klee 42 
                 ++k  l++k + +L    +l+e
  CCD25267.1 225 ENKLKLKFKRNfELntrsNLNE 246
                 3344444332212222223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1304  (0.0727313); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2345.09
//
Query:       CCD25268.1  [L=181]
Description: hypothetical protein NDAI_0E04510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-17   63.6   0.3    8.8e-17   61.1   0.0    2.1  2  Ribosomal_S18  Ribosomal protein S18


Domain annotation for each model (and alignments):
>> Ribosomal_S18  Ribosomal protein S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1     0.059   1.1e+03      14      37 ..      18      41 ..      15      44 .. 0.85
   2 !   61.1   0.0   4.9e-21   8.8e-17       7      52 .]     119     164 ..     111     164 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.059
  Ribosomal_S18 14 sqFiterGkIlprriTGlcakhQr 37
                   ++Fi+++    + + +G + k Q 
     CCD25268.1 18 RRFISSSKTLTNNNRNGFSIKPQQ 41
                   789999999999999999988886 PP

  == domain 2  score: 61.1 bits;  conditional E-value: 4.9e-21
  Ribosomal_S18   7 YkdvelLsqFiterGkIlprriTGlcakhQrklakaIkrARhlaLL 52 
                    Y  +++L  F+t++GkIl+r +TGl+ak+Qr+++kaI+rA+ ++L+
     CCD25268.1 119 YSSPNKLYPFLTSTGKILHRDVTGLSAKNQRRVSKAIRRAQSIGLI 164
                    99999***************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.41
# Mc/sec: 1324.47
//
Query:       CCD25269.1  [L=638]
Description: hypothetical protein NDAI_0E04520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-85  285.9   4.1    8.2e-83  277.7   4.2    2.3  2  Ofd1_CTDD       Oxoglutarate and iron-dependent oxygenase deg
    8.8e-27   93.6   0.0    6.3e-26   90.9   0.0    2.2  2  2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
      2e-15   57.5   0.0    5.3e-15   56.1   0.0    1.8  2  2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
  ------ inclusion threshold ------
      0.019   15.4   0.0      0.041   14.4   0.0    1.6  1  2OG-FeII_Oxy    2OG-Fe(II) oxygenase superfamily
       0.02   14.8   0.7      0.049   13.5   0.7    1.6  1  Staphostatin_A  Staphostatin A
      0.069   12.8   2.2       0.16   11.6   2.2    1.6  1  Ndc80_HEC       HEC/Ndc80p family


Domain annotation for each model (and alignments):
>> Ofd1_CTDD  Oxoglutarate and iron-dependent oxygenase degradation C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0021       6.2     105     183 ..     111     190 ..      30     203 .. 0.83
   2 !  277.7   4.2   2.7e-86   8.2e-83       2     256 .]     332     627 ..     331     628 .. 0.95

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0021
                 HHHHH.HHHHSHHHHHHHHHHHSE.EE..-EEEEEEEEE-TTT-EE--BE----GEEEEEEEEE.---S-TTTSTT---EEE CS
   Ofd1_CTDD 105 lkeLlekllkskafrkwlalitgldll..tsesilarRfrpGkdytLatsteeeeavLevtlnl.tptkgWesgevGGyely 183
                 l +L  ++l s+++rk+ + it++  l  +++++ +  + +G  + + +++   + ++ + l+l  p + W+s+  GG  ly
  CCD25269.1 111 LFKLR-EILYSEKYRKFFSFITQSGDLssEKTDMSINTYTKG-CHLVPHDDVIGSRRISFILYLpDPDRTWKSHYGGGLRLY 190
                 55666.889999**********998873456678999*****.6777778777889*******9557899****99999988 PP

  == domain 2  score: 277.7 bits;  conditional E-value: 2.7e-86
                 HHHHHTTTB-GGGTSHHHHHHHHHHHHHHSEEEESS-B-HHHHHHHHHHH..HHHHHHS----SGGG--TT-EE-B-TTTEE-EEE-SSS----SSHH. CS
   Ofd1_CTDD   2 elefLlkylnpeYLtketveelqeqfeeessieledfLkkeiaeklkksleseekekekelpqkseeiekpWkvagPphkqrylyldseeatekkeee. 99 
                 e+++L ky+++e+Lt+e +++lq+qf+e+s +++e fL++e++e lk+ +  + +e ek++p+ s++++ pWk+a+P+hk++yly+d+++ ++ ++ e 
  CCD25269.1 332 EVKYLRKYISEEHLTEEGITKLQTQFSENSFLTIETFLNNEKSELLKELI--KITELEKDCPYVSKDVSYPWKTAMPSHKRKYLYIDGKKFQKFETGEd 428
                 899***********************************************..77778889**********************************9999* PP

                 ..............................HHHHHHHHHH.HHHHSHHHHHHHHHHHSE.EE-EEEEEEEEE-TTT-EE--BE----G........EEE CS
   Ofd1_CTDD 100 ..............................daeeklkeLlekllkskafrkwlalitgldlltsesilarRfrpGkdytLatsteeee........avL 160
                                                +e  l eL+  ++ks  f+k+l l+t+l +l se+il+rRfrpG d+tLa++++ +         +vL
  CCD25269.1 429 liatinndelsnfemvkeiisskktsnddyGVEIELIELS-CFFKSLIFKKYLLLLTSL-CLVSEQILIRRFRPGLDFTLANKCQLNVkhfneildNVL 525
                 ****************************9989999*****.9*****************.************************998789********* PP

                 EEEEEE---S-TTTSTT---EEEEE------......--------------EEEEE---EEEEEEEEEETTEEEEE----TT-SS-EEEEEEEEEEEE- CS
   Ofd1_CTDD 161 evtlnltptkgWesgevGGyelymagdddee......eDpavYksddeddsvLlslaaswNslslvlrdegvlkFvKYvsasakgsrwdvsgeyevkse 253
                 e tl+ltp+kgWesgevGGye+ym++d +e        ++  Yk dd  dsvLl+ ++swNs++lvlrde+vl+FvKYvs+sak+srwd++ +y+vks 
  CCD25269.1 526 EGTLCLTPSKGWESGEVGGYEMYMMDDTKEKledevdIEAEWYKNDDGGDSVLLNCKPSWNSFNLVLRDESVLEFVKYVSWSAKSSRWDIKLKYDVKSL 624
                 ************************665555444444477999******************************************************887 PP

                 XXX CS
   Ofd1_CTDD 254 eed 256
                 eed
  CCD25269.1 625 EED 627
                 765 PP

>> 2OG-FeII_Oxy_4  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0   2.1e-29   6.3e-26       1      93 []     143     244 ..     143     244 .. 0.87
   2 ?   -0.2   0.0      0.56   1.7e+03      51      71 ..     576     596 ..     536     616 .. 0.67

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 2.1e-29
  2OG-FeII_Oxy_4   1 lsvssYekgdvllnHdDvlegeRrvayilyle...eeWkeddGGaLllsdd......egdvtksivPkwnqlvlFevkeshsvaeva.svaekeR 85 
                     +s+++Y+kg++l+ HdDv +g+Rr+++ilyl    ++Wk+++GG L+l+d+      ++d + ++vP++nq+++F+v+++ s+++v+ + ++k+R
      CCD25269.1 143 MSINTYTKGCHLVPHDDV-IGSRRISFILYLPdpdRTWKSHYGGGLRLYDTimpnipQNDPCAKLVPQFNQIAFFKVNPGFSFHDVEeVKVDKHR 236
                     89****************.9***********76668**********999653333335799****************9998888887346799** PP

  2OG-FeII_Oxy_4  86 lsisgWfh 93 
                     lsi gW+h
      CCD25269.1 237 LSIQGWYH 244
                     ******98 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.56
  2OG-FeII_Oxy_4  51 dvtksivPkwnqlvlFevkes 71 
                     +v  +  P+wn++ l    es
      CCD25269.1 576 SVLLNCKPSWNSFNLVLRDES 596
                     345567899998887655444 PP

>> 2OG-FeII_Oxy_3  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.8e-18   5.3e-15       2      96 .]     144     244 ..     143     244 .. 0.93
   2 ?   -2.5   0.0       3.4     1e+04      35      49 ..     568     578 ..     524     597 .. 0.58

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.8e-18
                     EEEEE-TT-EEEEE-SS----TT.-.EEEEEEEEE........ET-B--EEE.................---TT-EEEEE-..B-T.EEE--B.- CS
  2OG-FeII_Oxy_3   2 qvlrygegqeykpHvDnfekeegsgqrrltvllyLne....keseeGGelelyekdk.......eavkikpkkgrlvlFesdellp.Hevlpvtk 84 
                      ++ y +g+++ pH+D +      g+rr++++lyL +    ++s+ GG l+ly++         +++k+ p+++++++F+++   + H v++v+ 
      CCD25269.1 144 SINTYTKGCHLVPHDDVI------GSRRISFILYLPDpdrtWKSHYGGGLRLYDTIMpnipqndPCAKLVPQFNQIAFFKVNPGFSfHDVEEVKV 232
                     6899************86......78*********999999999********9999999****9999999**********9776669******98 PP

                     SS-EEEEEEEEE CS
  2OG-FeII_Oxy_3  85 ggeRlsltgwir 96 
                     +++Rls+ gw++
      CCD25269.1 233 DKHRLSIQGWYH 244
                     88********98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 3.4
                     EE....ET-B--EEE CS
  2OG-FeII_Oxy_3  35 yLnekeseeGGelel 49 
                     y     +++GG+ +l
      CCD25269.1 568 YK----NDDGGDSVL 578
                     22....345555444 PP

>> 2OG-FeII_Oxy  2OG-Fe(II) oxygenase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.4e-05     0.041       4     100 ..     143     244 ..     140     245 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
                   EEEEEEE-S-...--------EEEEEESSSEEEEEEE-.......TT---EEEETE.EEE----T..TEEEEEE-HHHHHHTTS-S----EEE---- CS
  2OG-FeII_Oxy   4 llvlnyypph...pdpevilglgahtdaslltillqdd.......vgglevfkdgk.wlrvppvd..nslivniGdallflsngryksvlHrVlpvn 87 
                   + ++ y + +   p ++    + +++  s++ +l   d        ggl+++  ++   ++p+ d  ++l+++ +++++f  n     ++H V +v+
    CCD25269.1 143 MSINTYTKGChlvPHDD----VIGSRRISFILYLPDPDrtwkshyGGGLRLY--DTiMPNIPQNDpcAKLVPQFNQIAFFKVNPG--FSFHDVEEVK 231
                   55666644444445555....5668888888888888887777777777774..44477788766779********966644443..58******** PP

                   GTGSEEEEEEEE- CS
  2OG-FeII_Oxy  88 egerRvsiayfie 100
                   ++++R+si  +++
    CCD25269.1 232 VDKHRLSIQGWYH 244
                   ***********98 PP

>> Staphostatin_A  Staphostatin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.7   1.6e-05     0.049      24      88 ..     308     378 ..     289     388 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.6e-05
  Staphostatin_A  24 ileGiwhpveledsplkiilskeidsdyvcklinees......kklilsnkdnssivieiilindkklllt 88 
                     i e    p+el++ pl+  +  +++ +y+ k+i ee+       kl  +  +ns + ie +l n+k  ll+
      CCD25269.1 308 ITESLSIPKELKTIPLEDKFLSKEEVKYLRKYISEEHlteegiTKLQTQFSENSFLTIETFLNNEKSELLK 378
                     5577778***********999999***********99555444477788899************9987765 PP

>> Ndc80_HEC  HEC/Ndc80p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.2   5.3e-05      0.16      20     109 ..     313     403 ..     286     409 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.3e-05
   Ndc80_HEC  20 ekaasverDprplrdksfqseliqellefLkennfehsisaktlksPsqkdfssifkfLykrldpsyefq...kkieeevvkilkelrYPfae 109
                 + +  +e +  pl+dk   +e ++ l ++++e++ +++  +k  ++ s+  f++i +fL ++     +     +++e++++ + k++ YP++ 
  CCD25269.1 313 SIP--KELKTIPLEDKFLSKEEVKYLRKYISEEHLTEEGITKLQTQFSENSFLTIETFLNNEKSELLKELikiTELEKDCPYVSKDVSYPWKT 403
                 333..3334569***********************************************99855444322235999**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       842  (0.046963); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 4625.94
//
Query:       CCD25270.1  [L=100]
Description: hypothetical protein NDAI_0E04530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-15   54.5   3.0    1.2e-14   54.1   3.0    1.2  1  Complex1_LYR    Complex 1 protein (LYR family)
    0.00019   22.0   0.1    0.00022   21.8   0.1    1.2  1  Complex1_LYR_1  Complex1_LYR-like
     0.0007   20.3   1.4    0.00082   20.1   1.4    1.1  1  Complex1_LYR_2  Complex1_LYR-like
     0.0081   15.7   0.4      0.009   15.5   0.4    1.1  1  DUF5584         Family of unknown function (DUF5584)
  ------ inclusion threshold ------
      0.089   11.0   0.3        0.1   10.8   0.3    1.2  1  Mesothelin      Pre-pro-megakaryocyte potentiating factor pre


Domain annotation for each model (and alignments):
>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   3.0   3.3e-18   1.2e-14       1      57 [.      10      66 ..      10      68 .. 0.97

  Alignments for each domain:
  == domain 1  score: 54.1 bits;  conditional E-value: 3.3e-18
  Complex1_LYR  1 rqvLsLYRalLRearkfpdyntreyfrrriRdeFrknkhvtDpekieellkkgreeL 57
                  rqvLsLY++++++a++f + n+reyf r+ R++F++n  ++D ek+ +l+++++++L
    CCD25270.1 10 RQVLSLYKQFIKNANQFNNFNFREYFLRKSRASFKQNSTIQDAEKLSKLYQDAKNDL 66
                  79****************************************************998 PP

>> Complex1_LYR_1  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   6.2e-08   0.00022       1      71 [.      10      81 ..      10      97 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6.2e-08
  Complex1_LYR_1  1 reklrlyrallkaarrfPlrsrreivaeevraafrhplndslttkevdyklllgwer...aaaiqtyaenmywf 71
                    r++l+ly++++k a++f   + re    + ra f+   n +++ +e+  kl    +    a   q+   +my f
      CCD25270.1 10 RQVLSLYKQFIKNANQFNNFNFREYFLRKSRASFK--QNSTIQDAEKLSKLYQDAKNdlsALKRQSVISQMYTF 81
                    79*********************************..8999999998888765443211133345666677766 PP

>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   1.4   2.3e-07   0.00082       1      71 [.      12      83 ..      12      98 .. 0.81

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.3e-07
  Complex1_LYR_2  1 vlsLYrrllrelre.lppelrslgdayvraefrrhkhlknpeeialflknqreYaellerynpglkmteeek 71
                    vlsLY++ ++++++ +  + r+++ ++ ra f++++ ++++e+  ++ +  ++ +  l+r+   ++m   +k
      CCD25270.1 12 VLSLYKQFIKNANQfNNFNFREYFLRKSRASFKQNSTIQDAEKLSKLYQDAKNDLSALKRQSVISQMYTFDK 83
                    79**********773478999***************************999999999999965555555555 PP

>> DUF5584  Family of unknown function (DUF5584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   2.5e-06     0.009       8      75 ..       8      72 ..       1      83 [. 0.78

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.5e-06
     DUF5584  8 lvrilvkiyqyfvrlyqrlqkfwnvtvkgffvkkeeekissaesifhkekivvlGkvlknkslalekr 75
                ++r ++ +y+ f++     ++f n + +++f++k + ++ ++ +i   ek+  l +  kn+  al+++
  CCD25270.1  8 TRRQVLSLYKQFIKN---ANQFNNFNFREYFLRKSRASFKQNSTIQDAEKLSKLYQDAKNDLSALKRQ 72
                555566666666655...5556666789********************************99888765 PP

>> Mesothelin  Pre-pro-megakaryocyte potentiating factor precursor (Mesothelin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   2.8e-05       0.1     479     534 ..      36      90 ..       9      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.8e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Mesothelin 479 yakarlafqnvsgaeyfekiksflGGasvedlralsqqnvsmdlatfkklkvdavv 534
                   k+r +f+  s  +  ek++ +   a  +dl al +q v  ++ tf kl v+ v 
  CCD25270.1  36 LRKSRASFKQNSTIQDAEKLSKLYQDA-KNDLSALKRQSVISQMYTFDKLVVEPVD 90 
                 468899999999999999999877665.68********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1344  (0.0749624); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 753.48
//
Query:       CCD25271.1  [L=155]
Description: hypothetical protein NDAI_0E04540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.26s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1156.68
//
Query:       CCD25272.1  [L=167]
Description: hypothetical protein NDAI_0E04550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1216.81
//
Query:       CCD25273.1  [L=394]
Description: hypothetical protein NDAI_0E04560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-60  203.1  13.3    3.4e-60  203.1  13.3    1.9  2  DnaJ-X        X-domain of DnaJ-containing
    7.6e-27   93.2   0.4    6.9e-26   90.2   0.3    2.6  2  DnaJ          DnaJ domain
  ------ inclusion threshold ------
      0.038   14.2   0.2       0.11   12.6   0.2    1.8  1  Metal_resist  Heavy-metal resistance
       0.24   11.6   3.1        5.3    7.3   0.1    2.7  2  PurS          Phosphoribosylformylglycinamidine (FGAM) syntha
       0.26   10.9   8.1      0.033   13.8   3.5    1.9  2  BRD4_CDT      C-terminal domain of bromodomain protein 4
        3.2    7.8  10.7       0.48   10.5   4.4    2.5  2  DUF2205       Short coiled-coil protein


Domain annotation for each model (and alignments):
>> DnaJ-X  X-domain of DnaJ-containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.7      0.61   1.8e+03      94     134 ..     104     166 ..      97     177 .. 0.51
   2 !  203.1  13.3   1.1e-63   3.4e-60       2     211 .]     176     375 ..     175     375 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.61
      DnaJ-X  94 fktvssaldaqstmee....lakeqekk......................keeekeeeeeteeelae 134
                 f++++   da +++ e         e +                      + + ++ ++e+ +++ e
  CCD25273.1 104 FSLIKEFTDASEMFDEngnpK----ESNekdsagnpadsgmvkhdgkaasNRKADKLTKEQRSRMME 166
                 666666677777777743332....222334466677777776666644433333333333333333 PP

  == domain 2  score: 203.1 bits;  conditional E-value: 1.1e-63
      DnaJ-X   2 eereeeLakkLrekLspyveadkkeetesFkkkleeeaesLkmesFGleilhtIGkiYknkAksflkskqkflglgglfssvkekgrvvkdtfktvssa 100
                  ++++eLa kL+ kL++y  a k+++ ++F++kl +e+e+Lk esFGle+l +I+k+Yk+kA++f+ s +k++g++++f+ ++e+ r+vk+ ++++s++
  CCD25273.1 176 AKQVDELASKLTTKLDEYLIAVKENHLDQFNRKLDQEIEDLKLESFGLELLYLIAKVYKTKANNFIIS-KKTYGFSKIFTGTRENARTVKSAYNLLSTG 273
                 5899*****************9999*******************************************.9***************************** PP

      DnaJ-X 101 ldaqstmeelakeqekkkeeekeeeeeteeelaemekkllgkvLaaawkgskfeIestlrevcdkvLkDksvdketrlkRAeaLkilGeifqkakrtek 199
                 +++q++mee+  ++ +       +ee +++e+a++e+ ++gk L ++w++skfe++++l+e+c+kvL+Dk+v++++r+++A+a+++++e+f++akr+++
  CCD25273.1 274 IETQKAMEEM--NKVN-------PEELDQYERAKFENMIAGKALGMMWEMSKFELQQKLKEICNKVLQDKNVSSKVRIAKAKAMLYIAEKFASAKRSPE 363
                 *********8..3333.......589************************************************************************* PP

      DnaJ-X 200 eeeearvfeelv 211
                 e+eearvfeel+
  CCD25273.1 364 EAEEARVFEELI 375
                 **********96 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.3   2.3e-29   6.9e-26       1      63 []       6      68 ..       6      68 .. 0.99
   2 ?   -0.9   0.0       0.6   1.8e+03      43      55 ..     260     272 ..     254     278 .. 0.76

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 2.3e-29
                HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +yY+iLgv++da+  eIkkaYr++a++ HPDk+p+dp+a+ kF+ + eAy+vLsdp  R++YD
  CCD25273.1  6 EYYDILGVEPDATPTEIKKAYRRKAMQTHPDKHPDDPDAQAKFQAVGEAYQVLSDPGLRSRYD 68
                59************************************************************9 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.6
                 HHHHHHHHHHHTS CS
        DnaJ  43 FkeineAyevLsd 55 
                  + ++ Ay+ Ls+
  CCD25273.1 260 ARTVKSAYNLLST 272
                 5678899999985 PP

>> Metal_resist  Heavy-metal resistance
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   3.8e-05      0.11      25      71 ..     139     184 ..     130     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.8e-05
                   XXTTHHBH.HHHHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Metal_resist  25 ppggpargraellraalgLpaeqraelraalrdharelralrrelra 71 
                   +  ++++ +a+ +r a++L++eqr ++ ++++++++e+ ++  el +
    CCD25273.1 139 GMVKHDG-KAASNRKADKLTKEQRSRMMELEKKRREEMAKQVDELAS 184
                   3333333.5999**************************999888766 PP

>> PurS  Phosphoribosylformylglycinamidine (FGAM) synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.5     0.021        63      43      64 ..     165     186 ..     150     188 .. 0.91
   2 ?    7.3   0.1    0.0018       5.3      26      70 ..     293     336 ..     288     343 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.021
                 EEEE-SSHHHHHHHHHHHHHHT CS
        PurS  43 leleaedeeeaeeeveemcekl 64 
                 +ele++ +ee+ ++v+e+++kl
  CCD25273.1 165 MELEKKRREEMAKQVDELASKL 186
                 7899999************997 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0018
                 HTTHTTEEEEEEEEEEEEEEE-SSHHHHHHHHHHHHHHTTS-TTT CS
        PurS  26 slgyeevedvrvgkyieleleaedeeeaeeeveemceklLaNpvi 70 
                 + +  + e++  gk + +  e  ++ e +++++e+c+k+L   ++
  CCD25273.1 293 QYERAKFENMIAGKALGMMWEM-SKFELQQKLKEICNKVLQDKNV 336
                 5555667888899999999995.67889************88776 PP

>> BRD4_CDT  C-terminal domain of bromodomain protein 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       3.3   9.9e+03      19      24 ..      27      32 ..      25      33 .. 0.82
   2 ?   13.8   3.5   1.1e-05     0.033       8      28 ..     160     180 ..     156     180 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.3
    BRD4_CDT 19 rreama 24
                rr+am+
  CCD25273.1 27 RRKAMQ 32
                899996 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.1e-05
    BRD4_CDT   8 elaRkrEqeRRrreamagtID 28 
                 ++ R++E e +rre+ma+++D
  CCD25273.1 160 QRSRMMELEKKRREEMAKQVD 180
                 678*****************9 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.4   0.00016      0.48       8      63 ..     162     216 ..     155     222 .. 0.87
   2 ?    0.1   0.4      0.27     8e+02      26      41 ..     317     332 ..     280     342 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00016
     DUF2205   8 edveklerearerLqqqakeLqssLq.aLaervdeVkeehdKLesenrfLqqYIgdL 63 
                   + +le+  re++ +q++eL s L  +L e   +Vke+h  L+  nr L q I+dL
  CCD25273.1 162 SRMMELEKKRREEMAKQVDELASKLTtKLDEYLIAVKENH--LDQFNRKLDQEIEDL 216
                 45778999*****************63799999*****99..89***********99 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.27
     DUF2205  26 keLqssLqaLaervde 41 
                  eLq+ L+++ ++v +
  CCD25273.1 317 FELQQKLKEICNKVLQ 332
                 4789999998888855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2179  (0.121535); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2910.70
//
Query:       CCD25274.1  [L=1103]
Description: hypothetical protein NDAI_0E04570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-08   34.4  14.1    1.4e-06   28.8   2.9    5.0  3  Arrestin_C  Arrestin (or S-antigen), C-terminal domain


Domain annotation for each model (and alignments):
>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1     0.015   2.7e+02      55      98 ..     125     178 ..      97     196 .. 0.65
   2 ?    1.6   0.2      0.02   3.6e+02      23      61 ..     356     426 ..     354     552 .. 0.67
   3 !   28.8   2.9     8e-11   1.4e-06       1     131 [.     611     909 ..     611     911 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.015
                 SEEEEEEEEEEEEE---......B-TTEE.EEEEEEE.--............--B--...---S- CS
  Arrestin_C  55 snkkeknvvaksdsvkv......tsaakdkletevelqiP............eeltp...ssarn 98 
                 +++++++         v      ++a +d+++ +++ +iP            +   +   s++ +
  CCD25274.1 125 QQRNKNHA--------VppcssdNRADGDTWNNTTNSTIPrniltnghltdiT---SsppSTNET 178
                 33333333........24444456799*************8888887774442...333244433 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.02
                 EEEEEEEE-SSSEEEEEEEEEEEEEEEESS..................................SEEEEEE CS
  Arrestin_C  23 pvtvkidndskkkvkkikvslvqhvdvcafnr................................snkkekn 61 
                 ++ v i  ++   +  i+v+l+ +v+++ +n+                                + +++++
  CCD25274.1 356 RIAVIISLNKETALSDIEVELCSRVKIFWNNGvpptktfneefytlgatrwslnqanfnlyippHVSSTEQ 426
                 57788888999999999999999999999976665544444444444444444444444444443333333 PP

  == domain 3  score: 28.8 bits;  conditional E-value: 8e-11
                 ----EEEEEEES-SEEETT--EEEEEEEE.E-SSSEEEEEEEEEEEEEEEESS.............................................. CS
  Arrestin_C   1 wdgkvsleaslpkkgyvpGetipvtvkid.ndskkkvkkikvslvqhvdvcafnr............................................ 54 
                 w +++ +e+s+++k ++   +ip+++k++   ++  vk+i+vs++++++++++n                                             
  CCD25274.1 611 WTDSLAYEISFSQKYVPLNNEIPIKIKLApMVKNICVKRIRVSITEKITFVSKNYefeydqvdpvakdpynpyyldfaskrrkernlnlleirtkekga 709
                 8899*************************5588899*****************9998888888888888888888888877777666666666666654 PP

                 ........SEEEEEEEEEEEEE---.........................B-TTEE.EEEEEEE.--................................ CS
  Arrestin_C  55 ........snkkeknvvaksdsvkv.........................tsaakdkletevelqiP................................ 88 
                         +                                         +++ ++++ +e++l++P                                
  CCD25274.1 710 ramreeivE---------------NcyddnllsystidtgsvhskneeekKVGITEPIIIETKLEFPkyadlarksakvtppygidiytnvptfdrtaa 793
                 444444441...............044444455555566655555555556788888888888888899666666666666666666655555555555 PP

                 ......--B-----................................................................S---EEEEEEEEEEEEEEE.. CS
  Arrestin_C  89 ......eeltpssa................................................................rnvelikvsYklkvkltls.. 115
                                                                                                  ++i+ ++kl++ l++s  
  CCD25274.1 794 ddhhrsS------VisflsghkssfsstkknsqedgehnqheninprfretrfrtnsgtnvkhhtklnrpkrglyldsLHFSNIHCKHKLEIMLRISkp 886
                 5555550......05555555555555556666666666666677777777777888888888888888888888888899****************** PP

                 ......S.SEEEEEEEEEEEEEB CS
  Arrestin_C 116 ......g.sggelslelPivlgs 131
                       + +++e+ ++ Pi l+s
  CCD25274.1 887 dlaipgKlRHYEVLIDTPIFLVS 909
                 ****975899*********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.23s 00:00:00.95 Elapsed: 00:00:00.39
# Mc/sec: 8436.35
//
Query:       CCD25275.1  [L=215]
Description: hypothetical protein NDAI_0E04580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-31  109.0  20.2    1.6e-31  109.0  20.2    1.5  2  Got1      Got1/Sft2-like family
  ------ inclusion threshold ------
        1.7    7.3  11.1         59    2.2  11.1    2.0  1  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> Got1  Got1/Sft2-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.18   1.6e+03      50      68 ..      75      93 ..      73      95 .. 0.73
   2 !  109.0  20.2   1.8e-35   1.6e-31       2     112 ..      92     202 ..      90     203 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.18
        Got1 50 mfskerliativyllslll 68
                + ++erli  i++ll+ ++
  CCD25275.1 75 LSRTERLILFICFLLGAAV 93
                5677888888888887665 PP

  == domain 2  score: 109.0 bits;  conditional E-value: 1.8e-35
        Got1   2 vllfllsllglpllflkprkFallytlGnilflastafLiGpkkqlkkmfskerliativyllsllltLyaalvlkstlltllfvivqllallwyllsy 100
                 +++f+l+++ +p+l++kprkF+ll+++G++lf++++++++Gp +++k+++s+erl++ti++++++++t+y+a ++ks +lt+ ++i+ql+a+l+y +sy
  CCD25275.1  92 AVCFTLCVFLFPVLAIKPRKFGLLWSFGSLLFVTAFGIFMGPIAYMKHLTSRERLPFTIFFFTTCFMTIYFAAFMKSSILTIPCAILQLIAVLYYAISY 190
                 68999998889**************************************************************************************** PP

        Got1 101 iPggrsalkkvl 112
                 +P+g ++l+++ 
  CCD25275.1 191 FPFGGTTLRMLS 202
                 ********9875 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2  11.1    0.0066        59     349     409 ..      37     145 ..       4     202 .. 0.57

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.0066
     DUF2207 349 kakkfkkalkkwksavkk....kergyfdkkgkkklkklsalglgliilglilillallllvll................................... 408
                    ++ ++l++ +++v++    +++ +++++++ + ++ls    ++++++++l+ +++++l ++                                   
  CCD25275.1  37 FFGRIGESLNATANDVYQrlpiSRQDLIQETQEPEWFTLSRTERLILFICFLLGAAVCFTLCVFlfpvlaikprkfgllwsfgsllfvtafgifmgpia 135
                 555666667777777777888855555555555555555555555555555555555555544455566677899877765555555555555555555 PP

     DUF2207 409 .........l 409
                           
  CCD25275.1 136 ymkhltsreR 145
                 5555544440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 1751.64
//
Query:       CCD25276.1  [L=543]
Description: hypothetical protein NDAI_0E04590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-12   47.0   0.1    3.8e-12   46.0   0.1    1.6  1  HLH       Helix-loop-helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.1   2.1e-16   3.8e-12       1      53 []     358     418 ..     358     418 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 2.1e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHCST........CSTTSS-STHHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrellP........slppskKlsKaeiLekAveYIkhLq 53 
                 +r+ hn++ErrRR+ i+++++eL  l+P        s +++ K +K  iL k veY+  Lq
  CCD25276.1 358 KREFHNAVERRRRELIKQKIKELGNLVPpyllhydfSTGKQIKTNKGIILNKSVEYVAFLQ 418
                 7999******************************99889999***************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1071  (0.0597356); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4117.26
//
Query:       CCD25277.1  [L=1034]
Description: hypothetical protein NDAI_0E04600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-25   89.5  14.8    6.9e-18   65.1   6.1    2.9  3  zinc_ribbon_16  Zinc-ribbon like family
    1.6e-06   27.6   6.8    4.1e-06   26.3   6.8    1.7  1  Zn_ribbon_17    Zinc-ribbon, C4HC2 type
  ------ inclusion threshold ------
      0.085   13.8   3.9        3.6    8.6   0.0    4.4  5  WD40            WD domain, G-beta repeat
        1.5    9.2  10.6        1.8    9.0   4.1    3.3  3  zf-RING_2       Ring finger domain


Domain annotation for each model (and alignments):
>> zinc_ribbon_16  Zinc-ribbon like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   8.9e+03      33      79 ..     108     151 ..      91     170 .. 0.52
   2 !   29.7   0.4   1.3e-10     6e-07       1      64 [.     863     936 ..     863     963 .. 0.66
   3 !   65.1   6.1   1.5e-21   6.9e-18      68     124 ..     975    1031 ..     955    1032 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
  zinc_ribbon_16  33 ldksksslcprcskplpkcavcglslGtsdvtnkdskrksvvkevss 79 
                     ++++ ++   rc + l   +  ++++G +   ++ds     + +++ 
      CCD25277.1 108 IGINIRAKQQRCINALGINSNGLIAMGLDR-NRNDSSL--QIWDINY 151
                     555556666677777777777777777762.2333222..2333333 PP

  == domain 2  score: 29.7 bits;  conditional E-value: 1.3e-10
  zinc_ribbon_16   1 cnfckksit...pfsakektnilqaavssaGgakfl.......dksksslcprcskplpkcavcglslGtsdvt 64 
                     c +ckk++     +      nil+++++s    k         +++ + +cp+c+ p+p+ca+c++ lGts+++
      CCD25277.1 863 CIHCKKNVNnpkGIEHTSARNILHNNIASLPKMKGFrasdnsdEIRYRYACPHCGTPFPRCAICLMPLGTSNLP 936
                     77888888754434444455666667665443333211111113445789*********************986 PP

  == domain 3  score: 65.1 bits;  conditional E-value: 1.5e-21
  zinc_ribbon_16   68 skrksvvkevssskkrfekwlsfclscghgahashakewfsthsicpvadcncecke 124 
                      s + + + +++ +k r+++w+sfclsc+hg+ha h+ ewf++hs cp + cnc+c++
      CCD25277.1  975 SVEPDNIDQLRRKKLRLNEWFSFCLSCNHGMHAGHSDEWFEKHSTCPTPGCNCQCNK 1031
                      33446789999999*****************************************86 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   6.8   9.2e-10   4.1e-06      12      56 ..     989    1032 ..     987    1034 .] 0.92

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 9.2e-10
  Zn_ribbon_17   12 lavkgrvvlcgvCeHvlHasCarewfenddlaeCps.GCGckclek 56  
                    l+++  + +c +C+H +Ha   +ewfe+     Cp+ GC c+c ++
    CCD25277.1  989 LRLNEWFSFCLSCNHGMHAGHSDEWFEKHS--TCPTpGCNCQCNKQ 1032
                    67788899********************99..***********976 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.052   2.3e+02       5      38 .]      47      81 ..      43      81 .. 0.63
   2 ?   -1.9   0.0       1.7   7.6e+03      31      38 .]     141     148 ..     118     148 .. 0.69
   3 ?   -1.6   0.0       1.4   6.1e+03      13      29 ..     171     187 ..     165     190 .. 0.82
   4 ?    8.6   0.0    0.0008       3.6      10      38 .]     204     235 ..     196     235 .. 0.76
   5 ?   -3.7   0.0         4   1.8e+04      32      37 ..     290     295 ..     284     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.052
                EEEESSSSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40  5 rtltGHssvtslafspdgawla.sGsdDgtvriWd 38
                +t +  +s+t+l++s   a l+  G ++g vr+++
  CCD25277.1 47 HTVKDFGSITCLDYSYLDAGLVgVGEKNGYVRLFN 81
                55554456****54444444763345799999986 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.7
                 TSEEEEEE CS
        WD40  31 DgtvriWd 38 
                 D ++ iWd
  CCD25277.1 141 DSSLQIWD 148
                 999****9 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.4
                 EEEEEEETTSSEEEEEE CS
        WD40  13 vtslafspdgawlasGs 29 
                 + sl+f  d + la++s
  CCD25277.1 171 IISLKFLNDTNILAASS 187
                 55899********9887 PP

  == domain 4  score: 8.6 bits;  conditional E-value: 0.0008
                 S.SSE.EEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40  10 H.ssv.tslafspdgawlasG.sdDgtvriWd 38 
                 H +   ++++ +p ++w +s  +dDgt+ iWd
  CCD25277.1 204 HpTRLtYDIKLNPFNDWQFSTyGDDGTLAIWD 235
                 54445468999******5555588*******9 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 4
                 SEEEEE CS
        WD40  32 gtvriW 37 
                  t+++W
  CCD25277.1 290 DTIKLW 295
                 59**** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.74   3.3e+03      35      43 ..     908     916 ..     902     917 .. 0.71
   2 ?    2.4   0.0     0.045     2e+02       2      12 ..     922     932 ..     921     938 .. 0.81
   3 ?    9.0   4.1    0.0004       1.8      19      42 ..     999    1022 ..     990    1026 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.74
   zf-RING_2  35 rssstCPlC 43 
                 r +  CP C
  CCD25277.1 908 RYRYACPHC 916
                 445569999 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.045
   zf-RING_2   2 eCpICleelss 12 
                  C+ICl++l +
  CCD25277.1 922 RCAICLMPLGT 932
                 6*****99965 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0004
   zf-RING_2   19 lpCgHvfhreClerwlrssstCPl 42  
                  l C+H +h    ++w++++stCP+
  CCD25277.1  999 LSCNHGMHAGHSDEWFEKHSTCPT 1022
                  46*********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1087  (0.060628); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 7363.01
//
Query:       CCD25278.1  [L=1154]
Description: hypothetical protein NDAI_0E04610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.3e-60  202.8   0.0    1.9e-59  201.2   0.0    1.9  2  Pkinase       Protein kinase domain
    7.4e-35  120.5   0.0    1.6e-34  119.4   0.0    1.5  1  Pkinase_Tyr   Protein tyrosine kinase
    1.8e-21   76.0  11.2    5.2e-14   52.1   3.7    2.8  2  HR1           Hr1 repeat
    8.9e-19   67.1  38.1    1.7e-11   43.8  15.1    2.5  2  C1_1          Phorbol esters/diacylglycerol binding domain (C
    1.4e-12   48.1   2.0    5.5e-12   46.2   2.0    2.1  1  Pkinase_C     Protein kinase C terminal domain
    7.3e-07   29.4   0.3    3.2e-06   27.4   0.1    2.2  2  C2            C2 domain
    2.8e-05   23.6   0.0    0.00028   20.3   0.0    2.3  2  Kinase-like   Kinase-like
  ------ inclusion threshold ------
       0.11   13.2   0.6       0.91   10.3   0.6    2.8  1  RNA_polI_A14  Yeast RNA polymerase I subunit RPA14


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       3.5   7.8e+03     194     247 ..     123     177 ..     116     179 .. 0.50
   2 !  201.2   0.0   8.5e-63   1.9e-59       3     264 .]     829    1086 ..     827    1086 .. 0.91

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 3.5
                 S-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS..........-HHHHHHHHHHT-S CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilgetkeklpeasei..........seeakdllkkllkk 247
                 +  f+ + +k ++++  ++l+k+++i g+++                   s+ +++ll+k lkk
  CCD25278.1 123 QLEFKLQVEK-QYQEANTKLTKLYRIDGDEH--------TssaaeggafeSKYMIQLLTKSLKK 177
                 4444433332.23444444555555555322........0222333446688899998888876 PP

  == domain 2  score: 201.2 bits;  conditional E-value: 8.5e-63
                  EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHH...HHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS- CS
     Pkinase    3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikil...kklkhpnivrlyevfeekdelylvleyveggeladllerkgsl 95  
                   l+ lG+G+fGkV+  ++k+tg+  A+K++kk+++ ++++ +++++E k++    k+khp++ +ly +f++++++y+ +e++ gg+l+ +++ ++ l
  CCD25278.1  829 LLKVLGKGNFGKVILSRSKNTGRLCAIKVLKKDNIIQNHDiESARAEKKVFllaTKTKHPFLTNLYCSFQTENRIYFAMEFIGGGDLMWHVQ-NQRL 924 
                  6789*********************************999999****99862224566*********************************7.789* PP

                  -HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEE.SSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHH CS
     Pkinase   96 seeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlake.lessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyell 191 
                  s ++ak++a+++l +l+y H++g+i+rDlK eNiL+  +g++Ki+D+Gl+k  +  +sk+++f+gt+e++APE+lke++y+++vD+W+ Gv+ly++l
  CCD25278.1  925 SVRRAKFYAAEVLLALKYFHDNGVIYRDLKLENILLTPEGHIKIGDYGLCKDeMWYESKTSTFCGTPEFMAPEILKEQGYTRAVDWWAFGVLLYQML 1021
                  **************************************************952666777************************************** PP

                  HSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.....HHHHHTSGGG CS
     Pkinase  192 tgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.....aeellqhpyl 264 
                    + pfsg++++e ++++l++             +   + ++  ++ ++ + ll+kdp++Rl+     a e++++p++
  CCD25278.1 1022 LCQSPFSGDDEDEVFNAILTD-------------EPLYPIDMAGDIVQIFQGLLTKDPENRLGagprdALEVMEEPFF 1086
                  *******99999877777777.............3445667899******************9777777777777776 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0     7e-38   1.6e-34       3     249 ..     829    1069 ..     827    1072 .. 0.87

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 7e-38
                   EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHH...HTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr    3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee..keelleeakim...kklkhpnivkllgvctkeepllivteyvkgGdLlkfLr 93  
                   l k lG+G+fGkV+  + k    ++   +a+K+lk+++  ++   e+   e k++   +k+khp + +l+     e+++++ +e++ gGdL  +++
   CCD25278.1  829 LLKVLGKGNFGKVILSRSK----NTGRLCAIKVLKKDNIIQNhdIESARAEKKVFllaTKTKHPFLTNLYCSFQTENRIYFAMEFIGGGDLMWHVQ 920 
                   6799***********9999....99999******876543332255666666654223456********************************999 PP

                   HTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHH CS
  Pkinase_Tyr   94 kkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvW 189 
                   ++   +l++++   +a++v  +++y +++ ++ rdl   N+Ll+ + ++ki+D+GL++d   + + +k+++     ++mapE+lke+ +t + D W
   CCD25278.1  921 NQ---RLSVRRAKFYAAEVLLALKYFHDNGVIYRDLKLENILLTPEGHIKIGDYGLCKDE--MWYESKTSTFCGTPEFMAPEILKEQGYTRAVDWW 1011
                   88...99***************************************************98..455555555567889******************* PP

                   HHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr  190 sfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249 
                   +fGvll+ ++  ++sp++g ++ ev++++ +++ l  p ++  ++ ++ +  +++dpe+R
   CCD25278.1 1012 AFGVLLYQMLL-CQSPFSGDDEDEVFNAILTDEPLY-PIDMAGDIVQIFQGLLTKDPENR 1069
                   ********997.*****************9998886.55688999999999999999999 PP

>> HR1  Hr1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   3.7   2.3e-17   5.2e-14       3      65 ..       7      63 ..       6      67 .. 0.94
   2 !   27.6   0.8     1e-09   2.3e-06       1      66 [.     120     183 ..     120     186 .. 0.96

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 2.3e-17
         HR1  3 eelekklekElkireGAenllraleskktqnkkvrqeaeselsesnskielLreqLeelqasv 65
                e++++k+++E++i++GA nl +      t+n  v+q+++++++e++++ie+L+++L++l+  +
  CCD25278.1  7 EDIQRKIAVEQNIIQGATNLKK-----RTDNVMVIQKCNTNIREARQNIEYLEDTLRKLKL-N 63
                79********************.....9*******************************98.4 PP

  == domain 2  score: 27.6 bits;  conditional E-value: 1e-09
         HR1   1 rleelekklekElkireGAenllraleskktqnkkvrqeaeselsesnskielLreqLeelqasvq 66 
                 +l++le+kl++E++++e+  +l +++     ++    ++ae    es+  i+lL+++L+++qa + 
  CCD25278.1 120 MLQQLEFKLQVEKQYQEANTKLTKLYR--IDGDEHTSSAAEGGAFESKYMIQLLTKSLKKYQAINV 183
                 69*************************..9********************************9765 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8  15.1   7.6e-15   1.7e-11       1      51 [.     417     464 ..     417     466 .. 0.97
   2 !   29.0  15.0   3.3e-10   7.4e-07       1      52 [.     484     535 ..     480     536 .. 0.92

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 7.6e-15
                 --EEEE--SS--B-TTT-SB--SSSS-EEEETTT--EE-CCCCTTS-SBTT CS
        C1_1   1 HhwvhrnfkqptfCkhCgeflwgkekqglkCswCkllvHkkChekvpkecg 51 
                 Hh+v+++f++ + C++Cg+fl   +++g++C++Ck+l+HkkC+++v ++c 
  CCD25278.1 417 HHFVQKSFYNIMCCAYCGDFL---RYTGFQCQDCKFLCHKKCYTNVVTKCI 464
                 *********************...**************************7 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 3.3e-10
                 --EEEE--SS--B-TTT-SB--SSSS-EEEETTT--EE-CCCCTTS-SBTTC CS
        C1_1   1 HhwvhrnfkqptfCkhCgeflwgkekqglkCswCkllvHkkChekvpkecgc 52 
                 H++++ + + +++C+hCg +l  + +   kCs+C++ +H +C+++vp  cg+
  CCD25278.1 484 HRFEPVSNRGTKWCCHCGYILPWGKHKVRKCSECGIMCHTQCAHLVPDFCGM 535
                 88888899*************5589999**********************97 PP

>> Pkinase_C  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   2.0   2.5e-15   5.5e-12       1      46 []    1107    1147 ..    1107    1147 .. 0.98

  Alignments for each domain:
  == domain 1  score: 46.2 bits;  conditional E-value: 2.5e-15
   Pkinase_C    1 vesdeDtsNFDpeFTeedprdtppddmpagspltssvqenFrGFtY 46  
                  ++s+eDts+F+ eFT+++p++tp++     s lt   qe+FrGF++
  CCD25278.1 1107 IKSPEDTSYFEQEFTSAPPTLTPLP-----SILTTKEQEEFRGFSF 1147
                  89**********************9.....89*************9 PP

>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   1.4e-09   3.2e-06       3      74 ..     212     281 ..     210     309 .. 0.79
   2 ?   -2.5   0.0       2.9   6.5e+03       5      54 ..     688     735 ..     685     743 .. 0.66

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.4e-09
                 EEEEEEEEESSSSSST...TSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECS CS
          C2   3 levtvieAknLpnkdk...kgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndr 74 
                 l++ ++  +++ + +     +++++y+++++d+++ka+T+  +n    +Wnekf+++v++    ++e++++d+ +
  CCD25278.1 212 LTIGITALRDVDHIQSpmfARKPESYISIKIDDTVKARTKASRND---RWNEKFNISVDK--GNEVEITIYDKVN 281
                 6666666666644433455778******************65666...9***********..9*********654 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.9
                 EEEEEEESSSSSSTTSSCEEE..EEEEEECEEEEEE-SCSSSSSSEEEEEEE CS
          C2   5 vtvieAknLpnkdkkgssdpy..vkvsldgkqkakTrviknslnPvWnekft 54 
                 v v+e +++++   + ++++y  +++s+++k++ ++   + + +P++++++ 
  CCD25278.1 688 VAVTEDRDIEAE--QTQMSSYnnARLSIHDKNTLQSA-SEIT-EPTYEHSID 735
                 667777788777..44555552255666888888888.5555.799987766 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.18     4e+02      15      74 ..     828     888 ..     823     899 .. 0.74
   2 !   20.3   0.0   1.2e-07   0.00028     142     255 ..     931    1032 ..     862    1041 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.18
  Kinase-like  15 vrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeq..elairllrgknp 74 
                  v  ++l+kg++++v++ + ++tg   a+kv    +   ++d+e  + +  +++++  + k p
   CCD25278.1 828 VLLKVLGKGNFGKVILSRSKNTGRLCAIKVLKKDNIIQNHDIESARAEkkVFLLAT-KTKHP 888
                  67789*************************99999777778776654411455544.33555 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 1.2e-07
  Kinase-like  142 etiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlG 237 
                    ++a+ ll         + +++g++  +++ +n+ll ++g +++g+ + L ++   +  s++      pE+++        ++  +t ++d W+ G
   CCD25278.1  931 FYAAEVLLA------LKYFHDNGVIYRDLKLENILLTPEGHIKIGDYG-LCKDEMWYE-SKTSTFCGTPEFMAPEIL----KEQGYTRAVDWWAFG 1014
                   344444443......4899***************************96.9*******9.999998999******877....8899*********** PP

  Kinase-like  238 lviyriwclklPltlate 255 
                   +  y +   + P+  + e
   CCD25278.1 1015 VLLYQMLLCQSPFSGDDE 1032
                   *******99999987765 PP

>> RNA_polI_A14  Yeast RNA polymerase I subunit RPA14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.6    0.0004      0.91       6      44 ..     624     662 ..     621     714 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0004
  RNA_polI_A14   6 hvkssqhvskeevekfLteFIdekEssaselageesstk 44 
                   ++ ++q v++e++ k L++FId++E+  +  + +++ + 
    CCD25278.1 624 RFDNEQTVKQENIRKKLNTFIDNNEAYLDFTNNTSETMA 662
                   566789********************5444444333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1630  (0.0909142); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.87u 0.29s 00:00:01.15 Elapsed: 00:00:00.47
# Mc/sec: 7317.37
//
Query:       CCD25279.1  [L=1031]
Description: hypothetical protein NDAI_0E04620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.4e-139  463.9   0.7   7.9e-139  462.7   0.5    1.7  2  Lgl_C          Lethal giant larvae(Lgl) like, C-terminal
    4.7e-07   30.0   0.1       0.11   12.9   0.0    5.5  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    2.5e-05   24.9   0.0        7.4    7.6   0.0    4.2  3  WD40           WD domain, G-beta repeat
    8.9e-05   21.4   1.6        0.3    9.8   0.1    3.3  3  Nucleoporin_N  Nup133 N terminal like
  ------ inclusion threshold ------
       0.16   11.2   3.5         10    5.3   0.1    3.2  4  RAB3GAP2_N     Rab3 GTPase-activating protein regulatory subu


Domain annotation for each model (and alignments):
>> Lgl_C  Lethal giant larvae(Lgl) like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.48   1.7e+03      19      37 ..     169     187 ..     153     211 .. 0.59
   2 !  462.7   0.5  2.2e-142  7.9e-139       1     393 []     543     942 ..     543     942 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.48
                 EETTS-EEEEEEEE----- CS
       Lgl_C  19 aletGeVvvfkfgknknfk 37 
                 +l++G V+++  + n++ +
  CCD25279.1 169 GLQSGTVMIYDIDRNQFSN 187
                 4555555555555555544 PP

  == domain 2  score: 462.7 bits;  conditional E-value: 2.2e-142
                 S--EEEEEEETTTTEEEEEETTS-EEEEEEEE-----..-------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BT CS
       Lgl_C   1 kvevksvslaaetlElavaletGeVvvfkfgknknfk..nkeksgaleleqkrlqlknskeklldisdrakpslkegflPvtllnlkqgevsalkvSni 97 
                 +v++++ s+a+etlElav +e+G+Vv+fkf++nk+++  nk+k+++l le+ r++l+++ke l+d+++ra+  +k+gf+P+t++++k+g++sa+++Sn+
  CCD25279.1 543 SVSITHASFATETLELAVCVESGDVVLFKFEVNKFYDpeNKNKENNLALEFGRFSLNDHKEILIDVKSRASRYVKQGFMPITAVHAKRGRISAVTNSNV 641
                 599**********************************9999999******************************************************* PP

                 SEEEEEETTSEEEEEETTTTEEEEEEEGGG..T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE.--SS--- CS
       Lgl_C  98 GFvAigyesgslviiDlRGPaviynenisekllskeksskvttieFsvmelggdgyssilllvGtnkGelltfkilPessGrfevefadkt.aaddski 195
                 GFv i+ye+gs+++iD+RGPavi+++ni++  +s ++ + +t+ieFs+me+g+dgyssil+++Gtn+ e+l++++ Pes+Grf vef + t ++d + i
  CCD25279.1 642 GFVGIAYEDGSILVIDRRGPAVIFMDNIRN--ISGIRGQNITAIEFSIMEYGQDGYSSILMFCGTNNAEILVYRVFPESNGRFAVEFIEFTkTNDAGSI 738
                 ******************************..*********************************************************99677789** PP

                 -EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-....EEEEEEEEEEETTSEEEEEETT CS
       Lgl_C 196 lkiasieketgesalAtiskmqklskglvveglvvatskkdirvikpakskethksfedellcsaisvvktee....kkkgivlvaltkdgevkvlslP 290
                 +ki+++ k ++ s+ Atis+mq+lskg+ ++g+v +++++dir+ikp+kske+h+sf+ +l++s++s+v + +    ++ +i+l +l ++g++k+ls+P
  CCD25279.1 739 SKIDTFAKANKISCSATISRMQDLSKGIPIPGYVCISGQSDIRIIKPGKSKESHRSFKFPLAASGLSHVYMMNskgqRELMIILSCLLINGDIKILSVP 837
                 *********************************************************************9999999999999***************** PP

                 T--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES----....------B---TT----------TTTS-SS-----HHHHHHHHH-T CS
       Lgl_C 291 sLkeikkvklpealdarrlsessilrnGdilvrlgkleaallsvlgkskt..skeeeetdtlynekaaipprPqvsslqWirGtqyvskedLdlLigGp 387
                 +Lke+k+     ++++  ++ ss+l+nG+i vr+gk+ ++l+s ++  k   +k++  tdtlyn++++i++rPqv++lqW+rGt+++++e+Ld+L+gG+
  CCD25279.1 838 DLKELKSSPSLVPVHSAFMNGSSVLKNGEIAVRSGKFKMSLISLVNDPKSeiTKKSVDTDTLYNPNLRIKYRPQVNTLQWARGTVTCTPEQLDILLGGE 936
                 ********************************************9987766789999****************************************** PP

                 T----S CS
       Lgl_C 388 nRppsk 393
                 +Rp sk
  CCD25279.1 937 RRPASK 942
                 ****98 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.9e-05      0.11       5      88 ..      80     158 ..      76     162 .. 0.79
   2 ?    3.6   0.0     0.022        80       9      71 ..     125     184 ..     117     215 .. 0.61
   3 !    4.9   0.0    0.0089        32      46      89 ..     272     333 ..     259     336 .. 0.73
   4 ?    3.5   0.0     0.025        89      51      72 ..     503     524 ..     494     538 .. 0.86
   5 ?    0.7   0.0      0.19   6.8e+02      34      71 ..     539     576 ..     524     593 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.9e-05
  ANAPC4_WD40   5 ptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                   t  L+Alate+gel+++  +  +v+     +++  + ++++ + g  L  + ++ ++ +++ +s+kv+ ++   +   +tc++
   CCD25279.1  80 FTQSLLALATETGELRIYGEKQVEVVIP--LENKIPIVKMKFVK-GIYLIAVDAKDTILVISLYSKKVLTTVFSPNR--ITCME 158
                  5788************998876665544..59999******975.6666666667788999********99965555..99996 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.022
  ANAPC4_WD40   9 LiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  LiA+  + + +lv  l  ++v t+    + +++++++  p+   + ++ + g+v ++d+   +
   CCD25279.1 125 LIAVDAK-DTILVISLYSKKVLTT--VFSPNRITCMEVDPSLDWIFFGLQSGTVMIYDIDRNQ 184
                  4444433.3455555556666666..5666777777777777777777777777777776655 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0089
  ANAPC4_WD40  46 WkpdgklLavaysdgevrlldaesgkvvhslsvksek..................avtclgW 89 
                  ++p+   +  a++d+++ + da++g+++++ s  +++                  ++ +++W
   CCD25279.1 272 YHPNSLHILTAHEDNSLVFWDANTGELIQARSLLETDvnipqaglinntngdsgpQILSVDW 333
                  7788888899******************9998877765555555555555555555555555 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.025
  ANAPC4_WD40  51 klLavaysdgevrlldaesgkv 72 
                  ++++ ++ +g++r++da++g++
   CCD25279.1 503 SVIVTGHTNGSLRIYDASHGEL 524
                  68999*************9986 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.19
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  +++++ ++++ ++  +   Lav ++ g v l++ e  k
   CCD25279.1 539 NKSTSVSITHASFATETLELAVCVESGDVVLFKFEVNK 576
                  55666667777777777777777777777777666554 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0021       7.4      11      38 .]     152     179 ..     142     179 .. 0.84
   2 !    7.6   0.0    0.0022       7.7      15      38 .]     270     292 ..     256     292 .. 0.87
   3 ?    4.4   0.0     0.022        78      14      38 .]     502     518 ..     494     518 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0021
                 SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvriWd 38 
                 + +t++ ++p+ +w++ G   gtv+i+d
  CCD25279.1 152 NRITCMEVDPSLDWIFFGLQSGTVMIYD 179
                 35************988*99******98 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0022
                 EEEEETTSSEEEEEETTSEEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriWd 38 
                 sl ++p++  ++++++D+++ +Wd
  CCD25279.1 270 SL-YHPNSLHILTAHEDNSLVFWD 292
                 55.899999**************9 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.022
                 EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvriWd 38 
                 +s+        +++G+ +g++ri+d
  CCD25279.1 502 RSV--------IVTGHTNGSLRIYD 518
                 567........99**99******98 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0     0.006        21     177     228 ..      41      97 ..      19     105 .. 0.75
   2 !    9.8   0.1   8.5e-05       0.3     193     367 ..     143     293 ..     131     324 .. 0.59
   3 !    5.2   0.0    0.0021       7.5     208     269 ..     497     557 ..     491     563 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.006
                    EEE-SSSS-....--SSS--G.....----GG-EEEEEEECCTCEEEEEETTSEEEEE CS
  Nucleoporin_N 177 icltkgglssll.silpgvls.....gasereeivqlridssrrilytlsskgvirvy 228
                    ++++ + +  l  s  ++++      ++    +++ ++ d ++ +l +++++g++r+y
     CCD25279.1  41 VLRSANISD-LTaSSSSKMFNprelySFGFTGKVITMAFDFTQSLLALATETGELRIY 97 
                    444444444.22467777777999999999***************************9 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 8.5e-05
                    S--G----GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHHHHHH.HHSCHTTTCGCTTT-.EEEEEEES-TTTSSCEEEE CS
  Nucleoporin_N 193 gvlsgasereeivqlridssrrilytlsskgvirvydlsasngesslksdidirqilleaitesliasaplasksl.kildispvsaeessllhlv 287
                    +vl++ +++++i+++++d+s  +++  ++ g++ +yd+  +n+     s + i++  +         + ++++ +l ++++i+  +++    +  v
     CCD25279.1 143 KVLTTVFSPNRITCMEVDPSLDWIFFGLQSGTVMIYDID-RNQ----FSNMKIENLQK---------AKFFPKDRLsPVVSIQWNPRD----IGTV 220
                    455556779*****************************9.654....33333333333.........223333333145566666666....6666 PP

                    EEECSSSEEEEEEEEEEEECTTT-EEEEEEEEEEEEECCCCCSSSSS.SSBECC-CCSSETTCEEEEEEES--SEEEEEEE CS
  Nucleoporin_N 288 aitsngvrlylllsssssdspsalslvsvrfppkrlntysskllenk.kksklllpskiispgiflfvvfdkssavvlvsl 367
                     i+ + v   ++l+ +  d ++++ +    f+p    + +++ +  k  ++k++     + p ++  ++  + ++ v++++
     CCD25279.1 221 LISYEWVTVTYSLIDG--DIKQSFIYDLPPFSP----GGNPSMNVDKlRRPKVIQSL--YHPNSLHILTAHEDNSLVFWDA 293
                    6666666666666666..555554444444455....33333333334555555544..5555555555555566666666 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0021
                    EEECCTCEEEEEETTSEEEEEEEETTCE.E-EEEEEEEHHHHHHHH.HHSCHTTTCGCTTT-E CS
  Nucleoporin_N 208 ridssrrilytlsskgvirvydlsasng.esslksdidirqilleaitesliasaplaskslk 269
                    r  + r  ++t ++ g +r+yd s  ++ + s + d++++qil+++++ s+ ++a++a+++l+
     CCD25279.1 497 RKQELRSVIVTGHTNGSLRIYDAS-HGElDDSSVFDVNVSQILNKSTSVSI-THASFATETLE 557
                    555667899*************88.44469**************9955554.55577766665 PP

>> RAB3GAP2_N  Rab3 GTPase-activating protein regulatory subunit N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1    0.0028        10      76     127 ..      82     137 ..      66     155 .. 0.75
   2 ?   -2.6   0.0      0.69   2.5e+03      78      96 ..     165     183 ..     148     194 .. 0.79
   3 ?    5.0   0.0    0.0035        13      72     131 ..     498     564 ..     490     577 .. 0.71
   4 ?   -2.4   0.1      0.62   2.2e+03      51      92 ..     675     713 ..     666     714 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0028
  RAB3GAP2_N  76 wtviavGlssGylrfytengelLlsqllheepvlkikcv....ssqekeeseelsi 127
                 ++++a+ +++G lr+y e+ + ++  l ++ p++k+k v       +++++  l+i
  CCD25279.1  82 QSLLALATETGELRIYGEKQVEVVIPLENKIPIVKMKFVkgiyLIAVDAKDTILVI 137
                 67899********************************6355654434443333333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.69
  RAB3GAP2_N  78 viavGlssGylrfytenge 96 
                  i  Gl+sG +++y+ + +
  CCD25279.1 165 WIFFGLQSGTVMIYDIDRN 183
                 5889**********87655 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.0035
  RAB3GAP2_N  72 gspdwtviavGlssGylrfytengelLlsqllheepvlkikc.v......ssqekeeseelsilypk 131
                 ++   +vi+ G ++G+lr+y+ +   L    + + +v +i   +      +++ ++e+ el++  ++
  CCD25279.1 498 KQELRSVIVTGHTNGSLRIYDASHGELDDSSVFDVNVSQILNkStsvsitHASFATETLELAVCVES 564
                 466789**************99888787777777777777643134566666677777777776655 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.62
  RAB3GAP2_N  51 deeeeiItailclplsskssqgspdwtviavGlssGylrfyt 92 
                    +++Itai++  ++    q+++ ++++ +G+++  +++y+
  CCD25279.1 675 I-RGQNITAIEFSIMEY--GQDGYSSILMFCGTNNAEILVYR 713
                 4.6788*****999998..788999**********9999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1031 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 6718.81
//
Query:       CCD25280.1  [L=221]
Description: hypothetical protein NDAI_0E04630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-38  130.8   7.9    8.2e-38  130.3   7.9    1.2  1  Cid2      Caffeine-induced death protein 2


Domain annotation for each model (and alignments):
>> Cid2  Caffeine-induced death protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.3   7.9   4.6e-42   8.2e-38       1     159 [.      60     204 ..      60     205 .. 0.87

  Alignments for each domain:
  == domain 1  score: 130.3 bits;  conditional E-value: 4.6e-42
        Cid2   1 CfstselrdfLrlsRaaiDDtItqrLNalstpsrsagfdpsstalaipkesaCaefleevLfpsWqaRedvieyCakvaesedkedeeaalkeeeeaka 99 
                 C++++++++fLr++R+++DDt++q++N++s++++ +g+d       i++ ++C+ +++e L+++W+ R+d+i++C+k++++ +      +l ++ ++++
  CCD25280.1  60 CIHSTLVDSFLRMLRHSSDDTLRQKINDYSKRDN-NGND-------ISNYDKCRVVKNE-LYENWKVRTDIINFCDKESQNLK-----RELDAKYSNNN 144
                 *****************************98888.4553.......557789*888877.********************992.....22333334444 PP

        Cid2 100 aerasvderlDpyaardrleeresrlkeaeklarlvrnerkvEsIvrartwevlkerCge 159
                 ++++ vd rlDpyaard+++e+es++ e +k++++v+n++++EsI++++++++lk++C++
  CCD25280.1 145 SNDKPVDPRLDPYAARDYQDEQESQYGEYNKMRTWVANNLHIESILQNTSDRILKQNCDQ 204
                 444449****************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       888  (0.0495287); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1628.14
//
Query:       CCD25281.1  [L=487]
Description: hypothetical protein NDAI_0E04640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-23   81.7   0.0    8.3e-22   78.0   0.0    2.1  1  AIM24     Mitochondrial biogenesis AIM24


Domain annotation for each model (and alignments):
>> AIM24  Mitochondrial biogenesis AIM24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0   4.6e-26   8.3e-22       2     200 ..      61     400 ..      60     401 .. 0.78

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 4.6e-26
                 EEESSSS-EEEEEE-TT-EEEE-CCGEEEE...................................ETTEEEEE---------................. CS
       AIM24   2 evlgepssllsvtLspgeelyaerGalvam...................................sgkvemetgllkalkrl................. 48 
                 e+l++p +++++t++++ e ++++G+l+++                                   +                                 
  CCD25281.1  61 ELLNQPPTIAKITIPNSSEFFIKKGSLISLygtnpqnnlykpsklkaineqeqgegdnindtnntE---------------Kniettveynydhhpfpl 144
                 7899**************************777776666665555555555544444444333332...............022333344444444444 PP

                 ........................-----EEEEEEE......S.SS-EEEEE--SSSE......EEEEEEG.GTT.EEEEEGGGEEEEETT-EEEEEEE CS
       AIM24  49 ........................ltgeslfllkft......akissgtvllapklpg......tivtlel.gggdwlivqkdafLAatgnveldikfq 110
                                         l ++s +++k++      + +s++++l++++  +       +++l+l g++dw+i++++a+LA+++n++l+i+  
  CCD25281.1 145 hsisvtnnnkniiekdpnflnyipLMKSSNHFQKISfndsysNMNSKINILVSSPNTNvnpfpsPLYHLKLdGTKDWNIFNQNAILAFENNSNLQITQV 243
                 44444444444445555555555533333333333366666777888******99999999999*******89*****************998877766 PP

                 E..--.SSGGG.TS-EEE..EEEESSSEEEEEE.......ECSEEEEEEE..EEEEEEEGGGEEEEETTEEEEEEEE.T.................... CS
       AIM24 111 k..gl.kglfg.geglfl..qkltGrGlvalsg.......yGaiyeielka.geelvvdpghlvafsgslkfdierv.g.................... 174
                    +  ++ f+ + +lf+  ++++GrG+v+ls+       +G+i++++lk+  +e+ +++++l+a++g  ++d++++                      
  CCD25281.1 244 YdkNRkSSSFSsSPSLFNkyHRIKGRGNVLLSSsslsqgiGGSILTVHLKNgVDEILINSKNLLAINGVSQLDMNNSmAlfnssesshpppnrkhlplp 342
                 55455755666266699999*************9*****************99***********************961555678889999999***** PP

                 ...............................T---STTTTS-E.EEEEEEEEEEEEES CS
       AIM24 175 ...............................glkrrligGegl.flkltGpgtvllqs 200
                                                ++++ +  G+ l ++k+ Gp+t+l+qs
  CCD25281.1 343 siitndtflinmksilnfikictknsivsliHYYKIWKIGKPLtLIKINGPRTILIQS 400
                 *********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3726.18
//
Query:       CCD25282.1  [L=195]
Description: hypothetical protein NDAI_0E04650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-23   83.0   0.7    2.4e-23   81.8   0.7    1.7  1  NuA4         Histone acetyltransferase subunit NuA4
  ------ inclusion threshold ------
       0.16   12.0   0.1        1.6    8.7   0.1    2.1  2  AalphaY_MDB  Mating type protein A alpha Y mating type depend


Domain annotation for each model (and alignments):
>> NuA4  Histone acetyltransferase subunit NuA4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.7   2.7e-27   2.4e-23       1      78 [.      35     141 ..      35     142 .. 0.86

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 2.7e-27
        NuA4   1 eLkellkkkrelekelakleeqIydkEteYleet.....................ssvGNiikGFdnylkssssssaaer........rkrkvtdedri 70 
                 +Lk++l  kr+le+e++++++qIydkEteYl  +                     +s+GNiikGFd+++kss++++++++        ++ +++++dri
  CCD25282.1  35 KLKDSLLAKRNLEDEFDRIQQQIYDKETEYLAGSvgaptsnskgtpsssaaaaasHSIGNIIKGFDGFSKSSHHHHHHHHesnfnsgnNNVSFSNQDRI 133
                 699*******************************************************************5444444444344443333455******* PP

        NuA4  71 FSlSSvts 78 
                 FSlSS+ +
  CCD25282.1 134 FSLSSALF 141
                 *****987 PP

>> AalphaY_MDB  Mating type protein A alpha Y mating type dependent binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.039   3.5e+02      79     102 ..      42      65 ..       9      70 .. 0.70
   2 ?    8.7   0.1   0.00018       1.6      64     116 ..      95     147 ..      83     162 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.039
  AalphaY_MDB  79 wkhdleeafdrtahsisphnfqrl 102
                   k +le+ fdr  + i  ++ + l
   CCD25282.1  42 AKRNLEDEFDRIQQQIYDKETEYL 65 
                  4678999****9998877766555 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00018
  AalphaY_MDB  64 aikgtlsayesacarwkhdleeafdrtahsisphnfqrlaqlrtrlyveqvqk 116
                   ikg     +s+  + +h  e  f+     +s  n +r+  l + l+v+q q 
   CCD25282.1  95 IIKGFDGFSKSSHHHHHHHHESNFNSGNNNVSFSNQDRIFSLSSALFVKQQQE 147
                  5777777778888899999******************************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1695  (0.0945396); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1634.17
//
Query:       CCD25283.1  [L=367]
Description: hypothetical protein NDAI_0E04660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2580  (0.143901); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.39
# Mc/sec: 2844.71
//
Query:       CCD25284.1  [L=549]
Description: hypothetical protein NDAI_0E04670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-11   44.4   2.3    4.4e-05   23.9   0.0    3.2  3  PCI       PCI domain


Domain annotation for each model (and alignments):
>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.32   5.7e+03      40      56 ..     227     243 ..     182     257 .. 0.57
   2 !   18.8   0.1   9.5e-08    0.0017       3      60 ..     365     421 ..     363     424 .. 0.93
   3 !   23.9   0.0   2.4e-09   4.4e-05      68     105 .]     492     537 ..     489     537 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.32
                 HHHHHH.HHHHHHHHHHH CS
         PCI  40 esLekk.vrerllrqvsk 56 
                  +L++k ++++l+ +v  
  CCD25284.1 227 HKLQNKdMIKNLI-KVLN 243
                 3333331333333.4444 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 9.5e-08
                 HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCESE CS
         PCI   3 ysdllkalrsgnlsgfseelkdleeelladdglaqllesLekkvrerllrqvskiyss 60 
                 ++ +++++++gnl++f+e+ k++ e +  + g++  ++  ++ v ++l++ ++ki  +
  CCD25284.1 365 FHPIIQCFKTGNLQKFDETFKQN-EYFYLENGIYVAMTLIRELVFLKLIKNCYKIWLT 421
                 7899*******************.99***************************97655 PP

  == domain 3  score: 23.9 bits;  conditional E-value: 2.4e-09
                 HHHTSSH........HHHHHHHHHHHHTTSSSEEEETTTTEEEECS CS
         PCI  68 klldlsv........devEkilvklIrdgeirakidqesgivvfkk 105
                 k+l++++        de+E+ l++lI++++i++++++ ++++v++k
  CCD25284.1 492 KQLPMTSketrelilDEIECHLANLISKNYIKGYLSHGNRCLVISK 537
                 566777778888888****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1867  (0.104133); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.38
# Mc/sec: 4289.35
//
Query:       CCD25285.1  [L=53]
Description: hypothetical protein NDAI_0E04680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       228  (0.0127168); expected 358.6 (0.02)
Passed bias filter:                      123  (0.00686039); expected 358.6 (0.02)
Passed Vit filter:                         7  (0.000390429); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 419.33
//
Query:       CCD25286.1  [L=105]
Description: hypothetical protein NDAI_0E04690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-14   52.6   8.1    7.2e-14   52.3   8.1    1.0  1  Tmemb_14         Transmembrane proteins 14C
  ------ inclusion threshold ------
        0.1   13.0   3.0       0.23   11.8   0.4    2.1  2  Phage_holin_5_2  Phage holin family Hol44, in holin superfami


Domain annotation for each model (and alignments):
>> Tmemb_14  Transmembrane proteins 14C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   8.1   8.1e-18   7.2e-14       1      92 []       3      98 ..       3      98 .. 0.94

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 8.1e-18
    Tmemb_14  1 hlaiaygallavGGilgYlkagSvpSLiaGlllGallllagyllsknkka...kelslvislvlllvmgkrllktr..kfmpaglvavlsalmllfy 92
                h+ai + ++ ++GG++gY ++gS++SL +G++l+a ++ a+yl++ + +     +++l  slvl++v ++r ++++  k +p++l+ ++++l+ l+y
  CCD25286.1  3 HPAIFLTLVNLSGGMMGYQRKGSLISLLGGTTLSATFARAAYLIRYKIDVaqgISIALYSSLVLFMVGMIRGVSSNfeKQVPIILI-CFGLLSSLYY 98
                6899999************************************988877777899999****************9999********.9999999998 PP

>> Phage_holin_5_2  Phage holin family Hol44, in holin superfamily V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2     0.031   2.7e+02      34      65 ..      31      62 ..      23      65 .. 0.62
   2 ?   11.8   0.4   2.5e-05      0.23       4      40 ..      65     100 ..      63     105 .] 0.78

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.031
  Phage_holin_5_2 34 lgvvivft.a.dfqaedilifg..aiiqGilsggas 65
                      g    +t + +f  ++ li     ++qGi +++ s
       CCD25286.1 31 GG----TTlSaTFARAAYLIRYkiDVAQGISIALYS 62
                     33....332345555666665578999999999887 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.5e-05
  Phage_holin_5_2   4 ilyiiGeilKktekvkdkyIPlilgiiGiilgvvivf 40 
                      +l+++G+i   ++ + +k +P+il+++G++ ++ +++
       CCD25286.1  65 VLFMVGMIRGVSS-NFEKQVPIILICFGLLSSLYYFY 100
                      7899999877775.888*************9944443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       469  (0.0261587); expected 358.6 (0.02)
Passed bias filter:                      228  (0.0127168); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 823.41
//
Query:       CCD25287.1  [L=530]
Description: hypothetical protein NDAI_0E04700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-39  135.5   0.0    4.7e-39  134.4   0.0    1.6  1  AA_kinase  Amino acid kinase family
    1.8e-11   43.6   0.4    0.00012   21.7   0.1    2.8  2  ACT        ACT domain
      5e-08   32.6   1.8    1.6e-05   24.6   0.4    2.6  2  ACT_7      ACT domain


Domain annotation for each model (and alignments):
>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.0   7.9e-43   4.7e-39       1     241 []       9     308 ..       9     308 .. 0.81

  Alignments for each domain:
  == domain 1  score: 134.4 bits;  conditional E-value: 7.9e-43
                 TEEEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHT.......TEEEEEE--H.......HHHHHHHHH....TCCCCCHHHC.................. CS
   AA_kinase   1 krvVvKlGGssltdkeeaslrrlaeqiaalkesg.......nklvvVhGgg.......sftdgllal....ksglssgelaa................. 64 
                 ++vV K+GG+s+++       +++++i ++  s        n+++vV++++       ++t +ll+      ++++ +++++                 
  CCD25287.1   9 NWVVQKFGGTSVGKFPV----KIVDDIIKF-YSSpdnkeynNNVAVVCSARsssvkaeGTTSRLLKCcdlaSQEMDFKPIIEmirqdhidnaeryiqna 102
                 589**********6666....888888888.4444788899*********6678888888999888866553333333333366666666655555666 PP

                 .....................E..HHHHHHHHH...............HHHHHHHHHHHHHHHHTTHGEEEE-GGGTCEECCCE..HHHTTTCEEE... CS
   AA_kinase  65 ..................glrstleeagevatr...............dalaslgerlvaallaaglpavglsaaaldateagrdegsdgnvesvd... 127
                                   +                             d+++s+ge+l+  +++a+++++g++a+++d+t       sd n + +d   
  CCD25287.1 103 vlqtkliddsnkelklvdK-------------YleaskilgevstrtiDLVMSVGEKLSCLFITALCNDRGCKAKYVDLTHIVP---SDYNSTVLDnsf 185
                 6666544444444444444.............06666666666666********************************999888...555555555558 PP

                 ........CCHHHHHH..HTT-EEEEESEEEEETTTE...EEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCECCEEEHHHCHHCSSS CS
   AA_kinase 128 ........aeaieell..eagvvpvltgfigldeege...lgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarllpeisvdeaeesase 213
                         +e+++ ++  ++++vpv+tgf+gl + g    +grg +D +aal+A+a +Ad+l ++++VdG+++adp+kvp arll  ++ +ea e    
  CCD25287.1 186 ytflfqafKEKLQPFMnsKERIVPVFTGFFGLVPMGLlngVGRGYTDLCAALIAVAANADELQVWKEVDGIFTADPRKVPQARLLASVTPEEASE---- 280
                 999999999999999964446************9999999*******************************************************.... PP

                 .TTTHHHHCHHHHHHHHHCTT-EEEEEE CS
   AA_kinase 214 latgGmkvkhpaalaaarrggipvvItn 241
                 l+++G +v+hp +++ + +++ip++I+n
  CCD25287.1 281 LTYYGSEVIHPFTMEQVIQAKIPIRIKN 308
                 **************************98 PP

>> ACT  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.4e-07   0.00081      11      64 ..     374     425 ..     373     428 .. 0.78
   2 !   21.7   0.1   2.1e-08   0.00012      12      63 ..     450     495 ..     444     499 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.4e-07
                 TTHHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHHT CS
         ACT  11 PGlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealkk 64 
                 +G La++f++l ++ + +d i++++++    +   + +  + ++l +++e+lk 
  CCD25287.1 374 HGFLAQIFTILDKYKLVVDLISTSEVHV--SMALPIPDSDSMKSLRQAVEKLKV 425
                 69************************77..566666666666666666666665 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 2.1e-08
                 THHHHHHHHHHHTTSEEEEEEEEEESTTECEEEEEEEEEEHHHHHHHHHHHH CS
         ACT  12 GlLarvfgaladrgiNidsieqrssedkvagivfvvivvdeedleevlealk 63 
                 G+++  f++la+ giNi++i+q+        ++++ +v+de d  ++l+ ++
  CCD25287.1 450 GIAGTMFTTLAEQGINIEMISQGAN------EINISCVIDEVDSIKALQSIH 495
                 9999*******************99......566666666666555555554 PP

>> ACT_7  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00098       5.9       2      41 ..     356     394 ..     355     403 .. 0.79
   2 !   24.6   0.4   2.6e-09   1.6e-05       4      64 ..     433     495 ..     430     496 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00098
                 EEEEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEE CS
       ACT_7   2 sedgwiklsvvgsglpfdvtGivaklaspLaeagIsifqi 41 
                 +++++++l++++++ ++ + G++a++++ L + +  +  i
  CCD25287.1 356 TKNDIVVLNIHSNKKTL-SHGFLAQIFTILDKYKLVVDLI 394
                 57899********9999.***********97655555444 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 2.6e-09
                 EEEEEEEE-S-.---SS--HHHHHHHHHHTTT---EEEE...-SS-EEEEEEGGGHHHHHHHHH CS
       ACT_7   4 dgwiklsvvgsglpfdvtGivaklaspLaeagIsifqiS...tyrtdyiLVpeedlekAveaLh 64 
                 + ++ +s+vg  ++   +Gi+ ++++ Lae+gI+i +iS    ++ ++++++e d  kA++  h
  CCD25287.1 433 KKMAIVSLVGKQMKQ-FIGIAGTMFTTLAEQGINIEMISqgaNEINISCVIDEVDSIKALQSIH 495
                 567899*****8877.************************99999**********999998777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1162  (0.0648112); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3646.89
//
Query:       CCD25288.1  [L=270]
Description: hypothetical protein NDAI_0E04710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2315  (0.12912); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2031.50
//
Query:       CCD25289.1  [L=82]
Description: hypothetical protein NDAI_0E04720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-18   64.0   1.3    1.1e-17   63.7   1.3    1.1  1  Sec61_beta  Sec61beta family


Domain annotation for each model (and alignments):
>> Sec61_beta  Sec61beta family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   1.3   6.3e-22   1.1e-17       1      40 [.      35      74 ..      35      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 6.3e-22
                XXXXXXXXXX----SS-B-THHHHHHHHHHHHHHHHHTSS CS
  Sec61_beta  1 SsaGLlryyeedapgikidPkvVlvlsvafiasVilLhil 40
                Ss+ +l++y+++a+g+kidP+vVl+l+v+fi+sV++Lhi+
  CCD25289.1 35 SSNPMLKIYSDEATGLKIDPLVVLFLAVGFIFSVVALHII 74
                8**************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 608.03
//
Query:       CCD25290.1  [L=880]
Description: hypothetical protein NDAI_0E04730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-68  228.8   2.4    5.7e-68  228.1   2.4    1.4  1  MOZ_SAS   MOZ/SAS family
    3.4e-15   55.4   5.2    3.4e-15   55.4   5.2    2.1  2  zf-MYST   MYST family zinc finger domain
  ------ inclusion threshold ------
        2.9    8.1   5.8       0.57   10.4   0.8    2.4  2  DUF5470   Family of unknown function (DUF5470)


Domain annotation for each model (and alignments):
>> MOZ_SAS  MOZ/SAS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.1   2.4   9.6e-72   5.7e-68       1     176 [.     403     605 ..     403     608 .. 0.95

  Alignments for each domain:
  == domain 1  score: 228.1 bits;  conditional E-value: 9.6e-72
     MOZ_SAS   1 ppGkeiYrk..eklsvfevdGekeklycqnLcllaklFldhktlyydvepFlfYvltea..deegahivGyFskekesaeeynlaCilvlPpyqrkgyG 95 
                 ppG++iY    + ls++e+dG+++  yc+nLcll+klFl++ktlyydvepF+fYvl+++  d+ +++++GyFskek+++ +ynl+Cil+lP yqr gyG
  CCD25290.1 403 PPGNQIYFAqiNGLSIWEIDGRENIEYCRNLCLLSKLFLNSKTLYYDVEPFIFYVLMKQtkDSYDYNFIGYFSKEKSNSLNYNLSCILTLPIYQRMGYG 501
                 8******875578********************************************8755777899******************************** PP

     MOZ_SAS  96 klliefsYeLskrekkigtPekPlsdlgllsyrsywkeeilellkek.......................ekkkisieeisektgikeeDiistleelk 171
                 ++l+efsY Ls+re k+gtPekPlsdlgllsyr++wk +i+++l                          + k+i+++++++ tg++++D+i  le+lk
  CCD25290.1 502 NFLMEFSYLLSRREFKLGTPEKPLSDLGLLSYRNFWKIKIAKTLLLIknafeqsssssssssssssqaqlTLKTITLNDLANLTGMTTTDVIFGLEQLK 600
                 ******************************************87655579*****************999889************************** PP

     MOZ_SAS 172 llkya 176
                 ll y+
  CCD25290.1 601 LLYYH 605
                 *9886 PP

>> zf-MYST  MYST family zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.53   3.2e+03      40      53 ..     301     314 ..     300     315 .. 0.88
   2 !   55.4   5.2   5.7e-19   3.4e-15       4      55 .]     340     391 ..     338     391 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.53
     zf-MYST  40 kYmksakelerHkk 53 
                 +Y++s+++l +H +
  CCD25290.1 301 SYFNSNTTLANHSN 314
                 6***********75 PP

  == domain 2  score: 55.4 bits;  conditional E-value: 5.7e-19
     zf-MYST   4 iekieiGeyeiktWYfSpYPeelankekLyvCefClkYmksakelerHkkkC 55 
                 ie+i+i++yeiktWY SpYP  +++++ Ly+Ce Clk  +s+++  +H+ kC
  CCD25290.1 340 IEYIHINNYEIKTWYKSPYPLSTNKNKILYICELCLKNSNSRQTHYNHQFKC 391
                 99*************************************************9 PP

>> DUF5470  Family of unknown function (DUF5470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       1.3     8e+03      11      27 ..     323     339 ..     319     342 .. 0.82
   2 ?   10.4   0.8   9.6e-05      0.57      10      56 ..     548     591 ..     538     599 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.3
     DUF5470  11 entveskyksssvssss 27 
                 +n + sk k ++v  ss
  CCD25290.1 323 KNKIRSKLKITTVVNSS 339
                 69999****99998887 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 9.6e-05
     DUF5470  10 ientveskyksssvssssstGasaklslseyyktfeankvGqhttyd 56 
                 i+n+ e    sss sssss+ + a+l+l        an  G  tt d
  CCD25290.1 548 IKNAFEQS--SSSSSSSSSSSSQAQLTLKTITLNDLANLTGMTTT-D 591
                 66666654..55555666666778888887777777777776555.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (880 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1807  (0.100786); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 6273.87
//
Query:       CCD25291.1  [L=121]
Description: hypothetical protein NDAI_0E04740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-42  142.8   3.8    3.2e-42  142.8   3.8    1.6  2  Ribosomal_L34e  Ribosomal protein L34e
  ------ inclusion threshold ------
        0.2   11.6   2.7        7.4    6.6   0.1    2.4  2  FhuF_C          FhuF 2Fe-2S C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L34e  Ribosomal protein L34e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   3.8   3.5e-46   3.2e-42       1      94 []       1      94 [.       1      94 [. 1.00
   2 ?   -2.3   1.0      0.65   5.8e+03      56      70 ..     103     117 ..      98     121 .] 0.45

  Alignments for each domain:
  == domain 1  score: 142.8 bits;  conditional E-value: 3.5e-46
  Ribosomal_L34e  1 MvqrltyrrrlsYntrsnkvrvvktpggklvyqykkkkgkapkCgdckkkLqGipalrpkelsrlsktkktvsRaYGgslcakcvkerivrafl 94
                    M+qr+t+rrr+ Ynt+snk++vvktpgg l++q++kk +++pkCgdc+ +L G++alrp++++++skt+ktvsR YGgs+ca+cvkerivrafl
      CCD25291.1  1 MAQRVTFRRRNPYNTKSNKIKVVKTPGGILRAQHVKKLASRPKCGDCGIALPGVAALRPRQYASVSKTHKTVSRVYGGSRCANCVKERIVRAFL 94
                    9********************************************************************************************8 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.65
  Ribosomal_L34e  56 alrpkelsrlsktkk 70 
                     ++ +++ + ++k +k
      CCD25291.1 103 KVVKEQTEAAKKAEK 117
                     333444444444444 PP

>> FhuF_C  FhuF 2Fe-2S C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.3    0.0024        22      10      19 ..      38      47 ..      37      47 .. 0.85
   2 ?    6.6   0.1   0.00082       7.4      12      21 .]      77      86 ..      74      86 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0024
      FhuF_C 10 lpggeyCgsC 19
                l+  ++Cg+C
  CCD25291.1 38 LASRPKCGDC 47
                77889***** PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.00082
      FhuF_C 12 ggeyCgsCPL 21
                gg +C++C++
  CCD25291.1 77 GGSRCANCVK 86
                8999****96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1437  (0.0801495); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 1053.14
//
Query:       CCD25292.1  [L=128]
Description: hypothetical protein NDAI_0E04750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-40  138.4   0.5    1.2e-40  138.3   0.5    1.0  1  Ribonuc_L-PSP  Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.3   0.5   6.7e-45   1.2e-40       3     120 ..      11     125 ..       9     126 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.3 bits;  conditional E-value: 6.7e-45
                    TSTTTSSS-BSEEEETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSSTS--E CS
  Ribonuc_L-PSP   3 aapaaaapYsqavkagnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelkeaPa 98 
                    +ap+aaa+Ys+a+ka+nl+++sGq+pl+ ++++ veg+++++++q+++n+k+vL+a+++sl++++kv++Fladi++fae+n+vya++f+ +k  Pa
     CCD25292.1  11 EAPSAAASYSHAMKANNLIFLSGQIPLT-SDNKPVEGSIADKAEQVIQNVKKVLEASNSSLERIIKVNIFLADINSFAEFNTVYAKYFNVHK--PA 103
                    79*************************9.588888********************************************************8..** PP

                    EEEEE-SBSGGG-SEEEEEEEE CS
  Ribonuc_L-PSP  99 rsaveVaaLpkgakvEIeaiav 120
                    rs+v+VaaLp +a++E+e+ia+
     CCD25292.1 104 RSCVAVAALPLNADLEMEVIAA 125
                    ********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      611  (0.0340789); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 967.71
//
Query:       CCD25293.1  [L=115]
Description: hypothetical protein NDAI_0E04760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-31  107.2   0.5    5.1e-31  106.8   0.5    1.2  1  PET117    PET assembly of cytochrome c oxidase, mitochondrial


Domain annotation for each model (and alignments):
>> PET117  PET assembly of cytochrome c oxidase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.5   2.8e-35   5.1e-31       1      70 []       4      97 ..       4      97 .. 0.99

  Alignments for each domain:
  == domain 1  score: 106.8 bits;  conditional E-value: 2.8e-35
      PET117  1 AsKitLglsvlltaatvvgVHylQrlerealrqGvirDaerqaeK........................erkrkenkaeleeqkelrkkyekvQ 70
                AsKit++l++++t++t vgVH++Q lere+l+qG+i+Da+r+aeK                        e+kr +nk+e+e+q el+kkye+ Q
  CCD25293.1  4 ASKITFTLACIFTVTTTVGVHMVQALERETLHQGPIKDAKRVAEKkrlkdssgdevplgkqfgssdpskEKKRLFNKTEHEMQAELKKKYEQLQ 97
                8*******************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1094  (0.0610185); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 885.14
//
Query:       CCD25294.1  [L=303]
Description: hypothetical protein NDAI_0E04770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-27   95.4   1.9    8.1e-27   94.6   1.9    1.8  1  Cyclin    Cyclin


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   1.9   4.5e-31   8.1e-27      52     161 .]     152     283 ..      10     283 .. 0.89

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 4.5e-31
                 ....T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH..........................H-TT---STTTHHHHHHHHHHHHHHHH- CS
      Cyclin  52 kessFatkavpaisigsylsrlqkfgesaplvllgtliYldrivk........................rcvsealvvtsanihRllivallvatKflv 126
                   +sF +    +i++ +yl  lq+++++++  ll++liYldri +                         c     +v+s ++hRl++++++v++Kfl+
  CCD25294.1 152 VLQSFLGNHRLKIELEEYLNTLQRHCPMNTIDLLALLIYLDRIIQnlykypldkkpiyqfmasrfqhkqTC--LSRIVNSCTVHRLILAGITVSSKFLS 248
                 456777788899***************************************************88653333..34479********************* PP

                 SS---HHHHHHHHTS-HHHHHHHHHHHHHHTTT-- CS
      Cyclin 127 DlsysnekfakvggislkELnkLEidFlflvdFdl 161
                 D+ ysn+++a++ g+ l+ELn+LE +Fl l +F+l
  CCD25294.1 249 DFTYSNKRYAQASGLTLEELNYLEFQFLRLTNFNL 283
                 *********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2247.38
//
Query:       CCD25295.1  [L=535]
Description: hypothetical protein NDAI_0E04780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-95  320.9  34.8    1.4e-95  320.7  34.8    1.0  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.7  34.8  7.8e-100   1.4e-95       1     440 []      79     496 ..      79     496 .. 0.98

  Alignments for each domain:
  == domain 1  score: 320.7 bits;  conditional E-value: 7.8e-100
  Transp_cyt_pur   1 pvpe.eeRtwktlnlfsiWlganlnintwvigalg.lalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfG.irgsllplll 92 
                     p+++ e++++++ n++s+W++anl++++++ig+lg l++ Ln++ svlvi+++n++g+ +va+++l+Ga++Gl++++lsR++ G i+++++ l++
      CCD25295.1  79 PITDeEKTDGSLINAASMWFSANLVLPALAIGGLGpLVFSLNFGTSVLVIVFFNILGLLPVAFFSLFGAELGLRQMVLSRYLLGnITARIFALIN 173
                     67775888899************************************************************************************ PP

  Transp_cyt_pur  93 rvviaivwfgvqawiGsealllmlgkifgk..wleiggailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvka 185
                        +a+v++g+ ++i+s++ll+m++++ ++  +l++g +i+++++t+lvtff++ v+++++++ +v+++++f vi+a l  ++ f+ ++w+ + +
      CCD25295.1 174 --SVACVGWGIVNTIASAQLLNMINQG-PHkcPLWAG-CIIIIGATVLVTFFGYRVIHTYEKWSWVPNFAVFLVIIARLKMSGNFKGGEWTSGPT 264
                     ..99***********************.677******.********************************************************* PP

  Transp_cyt_pur 186 egGpvldkavklgkselflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfde 280
                     ++G+vl+    +g      s+v+g+++g++t++    D+t+y+++  ++ ki+++ v++l+++l++++il+aa+++aa + ++w+ +     + +
      CCD25295.1 265 TAGEVLS----FG------SSVFGFASGWTTYAS---DYTVYMPRGSNKFKIFFSLVAGLSFPLFFTMILGAACGSAAVNNSVWNEY-----YQS 341
                     *******....55......9*************9...**************************************************.....888 PP

  Transp_cyt_pur 281 t.agvllililvalaqlgvnisanllsagldlaallP..kkinikrgsliaavialvivpwkllsssskl..ftaflsllavflspvagviiady 370
                     + +g+l++++lv+++ +g+++++++l+a +++++++P  ++i++++++++++   +++v+w+l +++++l   ++ ++++a f+++++++i  +y
      CCD25295.1 342 NgMGGLTYAVLVPNSLHGFGQFCCVLLAISTVSNNVPnmYTIALSVQAIWEPFSRVPRVFWTLFGNAAALgiSIPGCYYFAEFMQYFMDSIA-YY 435
                     889********************************************************************9******************98.** PP

  Transp_cyt_pur 371 fvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvgikvvkgaeklfdlsylvG 440
                     +++++++  ++++++rr  saY+++++     ++++i+G  a +vg         ++g+ +++ +sy+ G
      CCD25295.1 436 LAIYIAIGLSEHFIYRRGYSAYNVEDWNDNSKLPIGIAGCCALVVG---------AFGVGLGMSQSYWTG 496
                     **********************************************.........899999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3986.03
//
Query:       CCD25296.1  [L=448]
Description: hypothetical protein NDAI_0E04790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-54  185.2   0.0    2.2e-54  184.7   0.0    1.2  1  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    1.1e-34  118.9   0.0    1.8e-34  118.3   0.0    1.3  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
     0.0028   17.0   0.1     0.0058   16.0   0.1    1.4  1  Thiolase_N       Thiolase, N-terminal domain


Domain annotation for each model (and alignments):
>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.7   0.0   3.8e-58   2.2e-54       2     253 .]       3     270 ..       2     270 .. 0.83

  Alignments for each domain:
  == domain 1  score: 184.7 bits;  conditional E-value: 3.8e-58
                    --EEEEEEEEEBTTBSSHHHHHHHHHTT---EEES-TTSSCGTTSB.....TSSTTEEE-BSS.EEE..S.TTEGGTTSTHHHHHHHCTS-HHHHH CS
  ketoacyl-synt   2 epvaivGmgarfPggndveefwelLlegrdaiselpadrwdadkly.....dpparaagkiktklggfld.vddfdpeffgispreaeamdpqqrl 91 
                    ++v+++G+g+ +P g++v+e w++Ll+++++i ++ + +   ++++     +pp+ a gk++     f + ++++ +++   +++  ++ + +++l
     CCD25296.1   3 RRVVVTGLGCITPIGHTVRESWRNLLASKSGIIPITELENYNNDYRpftkyIPPKVAVGKVPP----FSKeIKELSDALITSQEE--RKYSQFIKL 92 
                    79*******************************666544334444322233788888888887....777755555555444444..5******** PP

                    HHHHHHHHHHHHTS-HHTC....TTGG..........EEEEEEESST....HH.HHHHHHHHHTTGGGSCTTHHHHHSTTHHHHHHHHHHT--SSE CS
  ketoacyl-synt  92 lleaawealedagltpeel....dgsr..........vgvfiGvgag....dy.aalaaldedgsevkaspkavgavlanviagrisyalglrGps 168
                    ++ +++eal+da l  ++        +          +g++iG+g+g     y   l+ +++d  ++k+sp++++++l+n++ag++s++++lrGps
     CCD25296.1  93 SILTSYEALKDADLLSTNSslpnP--AintslcnldrFGCIIGSGIGsigdIYsTSLQFHENDP-KKKISPFFIPKILTNMAAGNVSIKFNLRGPS 185
                    **************7776645550..24555566666**********77653344445555444.7****************************** PP

                    EEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TTSGGGTTBTTB-SB-BB-EEEEEEEEECHHH CS
  ketoacyl-synt 169 vtvdtACsSslvavhaavqslrsgeadvalaGGvellltpeavagfsaagllspdgrckafdpkadGfvlGEGvGavvLkrleda 253
                    ++v+tAC++++ a+  a++ ++ g +d+++aG++e ++ p ++agf +a+ ++pdg +++fd + +GfvlGEG G++vL++le+a
     CCD25296.1 186 HSVSTACATGNNAIGDAYNFIKLGMQDICIAGASESSILPLSLAGFLRAKSITPDGISRPFDIERNGFVLGEGSGMLVLESLEHA 270
                    **********88888888****************************************************************987 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0     3e-38   1.8e-34       1     117 [.     278     394 ..     278     395 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 3e-38
                      SEEEEEEEEEE--STSSSTSTTHHHHHHHHHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGGSCTSEEE-THHHH-B-GGGH CS
  Ketoacyl-synt_C   1 yavikgsavnsdgahnsltapngeaqaraiekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekarkqplavgSvKsniGHleaAa 94 
                      y+++kg+++++d++h++ ++p+g++++ra+e al++++++  d+dyv+ah+t+t+lgD +E+ea+ +++   +r +pl+++S K ++GH ++Aa
       CCD25296.1 278 YCELKGYGLSCDAYHITSPSPSGDGAKRAMEMALSMSDIEIYDIDYVNAHATSTQLGDSTEIEAIISALIPPSRVNPLYISSNKGSVGHQLGAA 371
                      899**************************************************************99999999989****************** PP

                      HHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C  95 Gvaelikvvlalkhgvipptlnl 117
                      G++e i ++l+l++g+ip tlnl
       CCD25296.1 372 GAVESIFTILSLRNGIIPHTLNL 394
                      **********************8 PP

>> Thiolase_N  Thiolase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   9.7e-07    0.0058      75     114 ..     182     221 ..     165     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 9.7e-07
                 TSEEEEEEHGGGHHHHHHHHHHHHHHTTSHSEEEEEEEEE CS
  Thiolase_N  75 evpavtvnkvcsSglkavalaaqsiaageadvvvagGvEs 114
                   p++ v  +c+ g++a+ +a + i+ g  d+++ag  Es
  CCD25296.1 182 RGPSHSVSTACATGNNAIGDAYNFIKLGMQDICIAGASES 221
                 66899*******************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      251  (0.0139997); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 3513.53
//
Query:       CCD25297.1  [L=250]
Description: hypothetical protein NDAI_0E04800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-17   61.6   0.0    1.2e-16   61.3   0.0    1.1  1  HAD_2           Haloacid dehalogenase-like hydrolase
    9.6e-10   39.1   0.0    1.6e-07   31.9   0.0    2.2  1  Hydrolase       haloacid dehalogenase-like hydrolase
     0.0052   16.8   0.0      0.011   15.8   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
  ------ inclusion threshold ------
      0.013   16.0   0.0      0.017   15.5   0.0    1.2  1  HAD             haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   2.8e-20   1.2e-16       2     177 ..      16     196 ..      15     197 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 2.8e-20
       HAD_2   2 iFDlDgTlldteeliiqafnelleeyglselseeelrkli.glslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeL.keagykl 98 
                 +FD+DgT++ ++ +i+++++   ++   + ++ e++ ++  g  + +++ k++++   ee++++l  ++ e+  + +   ++g+ +l ++L k  + k 
  CCD25297.1  16 LFDVDGTIIISQGAIAAFWRDFGKDK--PYFDAEHVIHIShGWRTYDAIAKFAPDFADEELVTKLEGEIPEKYGE-HSIEVPGAVKLCNDLnKLPKEKW 111
                 8*******************999888..469999988876267899********999999999998888888877.9999***********4446899* PP

       HAD_2  99 givTsksreaveekleqlgiesyFdvivtsedvekkKPdpeviekalekl.......klkkeeviyvGDsptDieaakkagikvia 177
                 +++Ts++re++++ ++ l+i++  +  +t++dv++ KP+pe+++k  + l       + +k++vi+++D p +i a+k+ag+k+++
  CCD25297.1 112 AVATSGTREMATKWFDLLKIKRP-TYFITANDVKQGKPHPEPYLKGRNGLgypinekDPSKSKVIVFEDAPAGILAGKAAGCKIVG 196
                 *******************9876.5567899****************99988888878899**********************987 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   3.5e-11   1.6e-07       2     210 .]      13     191 ..      12     191 .. 0.68

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 3.5e-11
                 SEEEEESBTTTBCHHHHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgepsvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtv 100
                 ++ +fD+dGT++ ++  +  +++                          k+ +   ++        ++  g + + +              a + + ++
  CCD25297.1  13 NAALFDVDGTIIISQGAIAAFWRDF-----------------------GKDKPYFDAEHVI-----HISHGWRTYDAI----------AKFAPDFADEE 73 
                 6667777777776665566666666.......................2222222222222.....222222222222..........24444444444 PP

                 HHHTTHHHHHHHHH..HTHHBHTTHHHHHHHHHHTTE.EEEEEESSEHHHHHHHHHHTTGGGESEEEEHHCESSTTTSHHHHHHHHHHHT.......ST CS
                 xxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xx RF
   Hydrolase 101 allqaralavftia..dplkvkpeaaeavasLkaagi.evvlltgdnpetaeraanqlGddyfdaviasdietvakpspegkvaaireLq.......gk 189
                  +   ++ +++  +  +     p+a+++++ L++    +++++t++ +e+a +  + l  +     i++ +++ +kp+pe +++  + L+        +
  CCD25297.1  74 LVT--KLEGEIPEKygEHSIEVPGAVKLCNDLNKLPKeKWAVATSGTREMATKWFDLLKIKRPTYFITANDVKQGKPHPEPYLKGRNGLGypinekdPS 170
                 555..55555544444555589***********996659********************33336678888899****************9998866555 PP

                 GGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 190 peevamVGDgvnDaaalaaAg 210
                 +++v++++D + ++ a++aAg
  CCD25297.1 171 KSKVIVFEDAPAGILAGKAAG 191
                 99******************8 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.5e-06     0.011       3      50 ..     146     199 ..     145     216 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.5e-06
                     STTSSHHHHHHHHHH---.......GGGEEEEES-TTTHHHHHHHCT-EEEEESS CS
  Hydrolase_like   3 gKPepemydfalevlgsd.......peevlmiGDrlatDiagAnnaGwksvLVlt 50 
                     gKP+pe y   ++ lg +       +++v++  D   + i+++++aG+k v ++t
      CCD25297.1 146 GKPHPEPYLKGRNGLGYPinekdpsKSKVIVFEDA-PAGILAGKAAGCKIVGIAT 199
                     9**************6666666666999*******.99*************9988 PP

>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.0   3.9e-06     0.017       1     124 [.      15     134 ..      15     175 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.9e-06
         HAD   1 alfDfDgTLldgdsle.lllrfllrr.gaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalella.a 96 
                 alfD+DgT++ ++ ++ +++r +++  +  ++   ++       ++ ++++  + ++e l   l+g  +e   e+   v          pga++l++  
  CCD25297.1  15 ALFDVDGTIIISQGAIaAFWRDFGKDkPYFDAEHVIHISHGWRTYDAIAKFAPDFADEELVTKLEGEIPEKYGEHSIEV----------PGAVKLCNdL 103
                 79*******7775555566665555404444444444445555566666665555555555544444443333333333..........9999999966 PP

         HAD  97 hraaGdrvvvvSgglrplvepllaelg...a 124
                  +    + +v ++g r+++  + ++l    +
  CCD25297.1 104 NKLPKEKWAVATSGTREMATKWFDLLKikrP 134
                 6655568899999999999999999984443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.21s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2016.77
//
Query:       CCD25298.1  [L=550]
Description: hypothetical protein NDAI_0E04810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-44  150.5   4.4    2.4e-44  149.5   4.4    1.5  1  Vhr1      Transcription factor Vhr1
  ------ inclusion threshold ------
      0.084   13.2   1.6        1.1    9.6   0.1    2.8  2  Sen15     Sen15 protein


Domain annotation for each model (and alignments):
>> Vhr1  Transcription factor Vhr1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.5   4.4   2.7e-48   2.4e-44       2      91 .]      30     119 ..      29     119 .. 0.98

  Alignments for each domain:
  == domain 1  score: 149.5 bits;  conditional E-value: 2.7e-48
        Vhr1   2 ksgvthkireklnftdekkWkrfssrrLeLidkleLsekkaseqdeeikkiaeiLrtefeypeetlkefekLvraavqsvrrnrkrsskk 91 
                  +g+thkire+lnftde+kWk+fssrrLeLid++ Ls++kaseqd++ik+ia++Lr+ef+y++ +++efekLv+aavqsvrrnrkrs+kk
  CCD25298.1  30 GKGTTHKIREQLNFTDERKWKQFSSRRLELIDRFGLSQRKASEQDDNIKQIATLLRSEFGYSSLYANEFEKLVTAAVQSVRRNRKRSKKK 119
                 579************************************************************************************996 PP

>> Sen15  Sen15 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.039   3.5e+02      32      66 ..     112     146 ..      40     158 .. 0.69
   2 ?    9.6   0.1   0.00012       1.1      23      69 ..     468     521 ..     434     533 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.039
       Sen15  32 pkkklsedelvlPlelteklslekldkvfkelkee 66 
                 ++k++++++ ++P ++ ++ +l +l++v k+ +++
  CCD25298.1 112 NRKRSKKKNTLYPFKTYSQDELANLEEVAKNSNSS 146
                 22233333899999998888888888888875544 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00012
       Sen15  23 lklvllkGrpkkklsed.......elvlPlelteklslekldkvfkelkeekse 69 
                 l+ v l++ ++++++++       ++ +Pl+ t++l+ ++ld++++++++++++
  CCD25298.1 468 LSAVSLHASSPETAKQQaanstlpRASIPLSSTSSLETSSLDSIMNRITKNSKT 521
                 447778888888888889999999999*********************987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4391.60
//
Query:       CCD25299.1  [L=561]
Description: hypothetical protein NDAI_0E04820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.5e-283  939.0   0.8   7.5e-283  938.8   0.8    1.0  1  ICL         Isocitrate lyase family
    6.5e-10   38.9   0.0    1.2e-09   38.0   0.0    1.4  1  PEP_mutase  Phosphoenolpyruvate phosphomutase


Domain annotation for each model (and alignments):
>> ICL  Isocitrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  938.8   0.8  8.4e-287  7.5e-283       3     526 .]      25     555 ..      23     555 .. 0.98

  Alignments for each domain:
  == domain 1  score: 938.8 bits;  conditional E-value: 8.4e-287
                 HXHHHHHTSGGGGG---SS-HHHHHHH--SS-.---THHHHHHHHHHHHHHHHHHT--EEEEB--SHHHHHHHHHH-S-EEE-HHHHHHH--TT----S CS
         ICL   3 aevkkwwsdsrwrktkrvysaedivskrGnlk.ieyasseqakklfklleeheaektasktfGaldpvqvtqmakyldtiyvsGwqssstastsnepsp 100
                 a+++ wws++rw+ tkr+y+a+di+ +rG++  +ey ss +a klfkll++h +++t+sktfGaldpvqvtqmakyldtiyvsGwq+sstastsnep+p
  CCD25299.1  25 ADIESWWSQPRWSSTKRAYTARDIAIRRGSFPsVEYQSSLMATKLFKLLQNHYNNNTVSKTFGALDPVQVTQMAKYLDTIYVSGWQCSSTASTSNEPGP 123
                 89*****************************989***************************************************************** PP

                 S-S-S-TTHHHHHHHHHHHHHHHHHHHHHHHHHSS-HHHHTTS..--------EEEE-TT-SSSHHHHHHHHHHHHHTT-SEEEE-SB-TT-------- CS
         ICL 101 dladypmdtvpnkvehlflaqlfhdrkqkeerlkvkkeerekl..anvdylrpiiadadtGhGGltavvkltklfierGaaGihiedqasgtkkcGhma 197
                 dladypmdtvpnkvehlf+aqlfhd+kq ++r + ++ ++ k   + +dy+rpiiadad+GhGGltav+kltk+fierGaaGihiedq+s++kkcGhma
  CCD25299.1 124 DLADYPMDTVPNKVEHLFKAQLFHDKKQFQDRAQCSSPNDLKKlgPAIDYMRPIIADADAGHGGLTAVFKLTKMFIERGAAGIHIEDQTSTNKKCGHMA 222
                 ********************************99987765443349***************************************************** PP

                 -EEE--HHHHHHHHHHHHHHHHHTT---EEEEE--GGGEEEES-TT-GGGGGGEEEE--TTS-.-HHHHHHHHHHS---SHHHHHHHHHHHHHS-EE-S CS
         ICL 198 GkvlvpiqehinrlvairaqadilgsdllvvartdseaatlitstidtrdhafilGatnpdle.eladllveaeaeGksGaelqaiedewlkkaglklf 295
                 G++++p+qehinrl +ir++adil+s+l++vartdsea tli+stid rdh+fi+Gatnpd++ ++ad++++a+ +G + ++l+++e+ew++kaglklf
  CCD25299.1 223 GRCVIPVQEHINRLTTIRMCADILNSNLILVARTDSEAGTLISSTIDVRDHYFIVGATNPDVKiSFADVMNDAINKGYDSNQLETLEKEWCEKAGLKLF 321
                 **************************************************************648********************************** PP

                 HHHHHHHHHTSS...-S-HHHHHHHHHHHHTT--HH...HHHHHHHHHHSS----BTTSS--TT--EEE--SHHHHHHHHHHHTTS-SEEE---SS--H CS
         ICL 296 eeavvdeieksk...lsnkkelikkftkkvkplselsnkearklakellgkdiffdwelprvreGyyrykGgtqcsvvravafapyadliwmesklpdy 391
                 +ea+ de+  ++    ++k e+ikkf+++v pl+e+s+++a++l k+llg++i+f+welprvreG+yry+Ggtqc+v+ra+afapyadl+wmes++pdy
  CCD25299.1 322 HEAFRDEVLSDNklsKQEKDEKIKKFNAQVGPLTETSHNDAQELGKQLLGHKIHFNWELPRVREGLYRYRGGTQCAVMRARAFAPYADLVWMESNYPDY 420
                 *******97766444789999****************************************************************************** PP

                 HHHHHHHHHHHTT-TT-EEEEE--SSS-GGGTS-HHHHHSHHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTHHHHHHHT-GGGS CS
         ICL 392 aqakefaeGvkakvpeqklaynlspsfnwkkamsadeqetyikrlaklGyvwqfitlaGlhtnalisdkfakdyakrGmkaygeevqeeeidnGvdvvk 490
                 +qakefaeGvkak+p+q+laynlspsfnw+k ms d+q+t+i+rl++lGy+wqfitlaGlht+al+s++f++d+a+ Gm ay+++vq++e+dnGvdv+k
  CCD25299.1 421 EQAKEFAEGVKAKYPNQWLAYNLSPSFNWTKVMSPDDQKTFIQRLGDLGYIWQFITLAGLHTTALASHNFTRDFAEYGMMAYAQNVQQKEMDNGVDVLK 519
                 *************************************************************************************************** PP

                 HHHHHTHHHHHHHHHHHH--XXXXXXXXXXXXXXXX CS
         ICL 491 hqkwsGaeyidellklvtGGvsstaamGkGvtedqf 526
                 hqkwsGaeyid+llkl++GGvs+taamGkGvtedqf
  CCD25299.1 520 HQKWSGAEYIDGLLKLAQGGVSATAAMGKGVTEDQF 555
                 ***********************************9 PP

>> PEP_mutase  Phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   1.3e-13   1.2e-09      47     160 ..     123     269 ..      96     281 .. 0.71

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 1.3e-13
  PEP_mutase  47 pDgeelpleellaavraiaevvs.............................lPlivDledGygespeevaetvrrliaaGvvgvniEDk.....kknd 111
                 pD  + p++++ + v+++++++                               P+i+D+++G+g     v +  + +i+ G++g++iED+     k++ 
  CCD25299.1 123 PDLADYPMDTVPNKVEHLFKAQLfhdkkqfqdraqcsspndlkklgpaidymRPIIADADAGHGG-LTAVFKLTKMFIERGAAGIHIEDQtstnkKCGH 220
                 55555555555555555555554555555555555666666666666666668**********99.8999999*****************876533335 PP

  PEP_mutase 112 .aerqlldieefaekiaaaraaaeeag..fvinARtdalllsagagleeaie 160
                  a+r +++++e+ ++++++r  a+  +  ++++ARtd+   +ag  +  +i+
  CCD25299.1 221 mAGRCVIPVQEHINRLTTIRMCADILNsnLILVARTDS---EAGTLISSTID 269
                 4556666************9999988788********9...35666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4087.24
//
Query:       CCD25300.1  [L=339]
Description: hypothetical protein NDAI_0E04830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-72  240.5   5.7    1.3e-71  239.6   5.7    1.5  1  Flo11           Flo11 domain
  ------ inclusion threshold ------
       0.51   10.3   3.7        6.4    6.7   0.2    2.4  2  Staphostatin_A  Staphostatin A


Domain annotation for each model (and alignments):
>> Flo11  Flo11 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.6   5.7   1.4e-75   1.3e-71       1     150 []      41     191 ..      41     191 .. 0.99

  Alignments for each domain:
  == domain 1  score: 239.6 bits;  conditional E-value: 1.4e-75
                 S-TTSB-HHHHHTTTB--EEEEEEEEEEEETTEEEEEEEEEESS---GGGEEEEEEES-SSS-S-EEEEETTTTEE--S-TTEEEEEEEEE--.BSSSS CS
       Flo11   1 gcpdldfewhakntnipkydldvesvewvkdnlYevtihvkgeeqidlkylssLkiigisgpdstvvlygknektslidnptdftatfqvygd.ekdnc 98 
                 gcpdl+f wha+ntni+ky+ld+++vew+++nlYe+ti+v+geeqidlkyl+sLkiig++gp+st++lygkne+t lid+pt++t+tfqvyg  +kd+c
  CCD25300.1  41 GCPDLNFGWHAANTNILKYYLDILNVEWLGNNLYEITIQVTGEEQIDLKYLYSLKIIGVQGPKSTIQLYGKNENTFLIDSPTNYTVTFQVYGGaKKDEC 139
                 6************************************************************************************************** PP

                 EEE----EEEEEES-GGGGGGGGG--SB-SEEEEEB-SS-B-TTSBBSSSB- CS
       Flo11  99 kvwlPnFqiqyeylqgdaaqysetwkwgttsFdlstgcdnydnqgnsqtdfp 150
                 ++wlPnFqiqyeylqgda++y++twkwgttsFdlstgc+nydnq nsqtdfp
  CCD25300.1 140 NIWLPNFQIQYEYLQGDASKYQNTWKWGTTSFDLSTGCTNYDNQMNSQTDFP 191
                 ***************************************************8 PP

>> Staphostatin_A  Staphostatin A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2   0.00072       6.4      19      75 ..      58     118 ..      45     122 .. 0.78
   2 ?    3.9   0.4    0.0053        47      43      81 ..     286     324 ..     275     330 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00072
  Staphostatin_A  19 kyylnileGiwhpveledsplkiilskeidsdyvckl..inee..skklilsnkdnssivi 75 
                     kyyl+il+ +w   +l +  ++++ +++id +y+  l  i  +  +  + l+ k++++ +i
      CCD25300.1  58 KYYLDILNVEWLGNNLYEITIQVTGEEQIDLKYLYSLkiIGVQgpKSTIQLYGKNENTFLI 118
                     8******************************998644225443115567788887776666 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0053
  Staphostatin_A  43 lskeidsdyvcklineeskklilsnkdnssivieiilin 81 
                     + ++  ++y+ ++ n+     + s+    si+ieii   
      CCD25300.1 286 YVTSTITQYLSTVYNTYITYTTRSDITRVSIIIEIITSY 324
                     56777889***************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2676.51
//
Query:       CCD25301.1  [L=161]
Description: hypothetical protein NDAI_0E04840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-28   97.7  15.0    1.4e-27   96.6  15.0    1.4  1  RGI1      Respiratory growth induced protein 1


Domain annotation for each model (and alignments):
>> RGI1  Respiratory growth induced protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6  15.0   7.8e-32   1.4e-27      50     194 .]      20     157 ..       9     157 .. 0.91

  Alignments for each domain:
  == domain 1  score: 96.6 bits;  conditional E-value: 7.8e-32
        RGI1  50 pirefddleafeafirdetwdn.efdylharlkyyppfilkevhdnlekikptvnknskkfkrnlqhhvkkhlikdlekcsGy.eldfdkaevvetpkk 146
                 +++ f++l +fe +++ e  d   fd +h +l+yyppf++ ++hd+ +kik t n++ kkf r+l+ hv+khl+kd+++   + +l+++     e+ +k
  CCD25301.1  20 QVKVFEELDDFERYLKSEFEDTtRFDNMHLKLNYYPPFVMHHSHDDPDKIKDTDNSHNKKFVRHLHQHVEKHLLKDIKEAVNHpDLKWHDKSKDESFEK 118
                 7899**************999637*****************************************************988776489*99999******* PP

        RGI1 147 lkwkfkdesdhGfskeeedkydrhwklelevscnnenalvevdykaip 194
                 ++w++ +++++          ++ +k+e++v+cn  +a+vevdy+++p
  CCD25301.1 119 IVWHYAEDTEY---------NKKPFKMEVNVACNHLDAMVEVDYRTVP 157
                 *****866543.........24569*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1290  (0.0719505); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1306.83
//
Query:       CCD25302.1  [L=660]
Description: hypothetical protein NDAI_0E04850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-20   71.6  13.0    6.9e-20   70.6  13.0    1.5  1  zf-RING_4        RING/Ubox like zinc-binding domain
    7.8e-07   28.9   7.1    7.8e-07   28.9   7.1    1.6  2  zf-C3HC4_3       Zinc finger, C3HC4 type (RING finger)
    1.1e-05   25.1   0.1    4.3e-05   23.3   0.1    2.0  1  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
    4.2e-05   23.1   0.9    4.2e-05   23.1   0.9    3.3  4  Rtf2             Rtf2 RING-finger
    0.00012   22.0   3.4    0.00028   20.8   3.4    1.5  1  Baculo_IE-1      Baculovirus immediate-early protein (IE-0)
     0.0006   19.8   1.0     0.0006   19.8   1.0    4.6  4  SUIM_assoc       Unstructured region C-term to UIM in Ataxin3
     0.0018   18.6  10.1     0.0034   17.7  10.1    1.5  1  zf-RING_2        Ring finger domain
     0.0056   16.3   0.2      0.043   13.5   0.0    2.3  2  SET_assoc        Histone lysine methyltransferase SET associa
     0.0077   16.1   8.6        0.1   12.5   9.0    2.2  2  Prok-RING_4      Prokaryotic RING finger family 4
     0.0089   15.9  10.4      0.019   14.8  10.4    1.6  1  zf-C3HC4         Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.051   13.6   0.0       0.13   12.3   0.0    1.7  1  Nup35_RRM_2      Nup53/35/40-type RNA recognition motif
      0.068   13.3   4.4       0.14   12.3   4.4    1.4  1  zf-UDP           Zinc-binding RING-finger
       0.11   12.4   9.5       0.24   11.4   9.5    1.6  1  zf-RING_5        zinc-RING finger domain
       0.15   10.3   9.5      0.061   11.6   0.4    2.7  3  CDC45            CDC45-like protein
        6.7    7.4  12.1          2    9.2   0.6    3.3  3  FYDLN_acid       Protein of unknown function (FYDLN_acid)
        7.4    6.8  10.7         66    3.8  10.7    2.5  2  zf-C3HC4_4       zinc finger of C3HC4-type, RING


Domain annotation for each model (and alignments):
>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6  13.0   6.1e-23   6.9e-20       1      48 []      34      83 ..      34      83 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.6 bits;  conditional E-value: 6.1e-23
   zf-RING_4  1 cplCdeeldetdkdlkpCeCgyqiClfCyhrile..eeegrCPaCreeYk 48
                cplC+e+ld tdk+++pC+CgyqiC+fCy++i++  e +grCPaCr++Y+
  CCD25302.1 34 CPLCIEPLDITDKNFFPCPCGYQICQFCYNNIRQnpELNGRCPACRRKYD 83
                9*********************************5557***********7 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   7.1   6.9e-10   7.8e-07       2      48 ..      31      83 ..      30      84 .. 0.92
   2 ?   -3.6   0.4       9.8   1.1e+04      29      41 ..     233     248 ..     231     249 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 6.9e-10
                GSB-TTTSS....SBS-EEETTEEEEEE-HHHHHHHHH...TT-B-TTT--B-- CS
  zf-C3HC4_3  2 deeCviCle....rprnvvllpCgHlvlCeeCaekllk...rkkkCpiCrrpie 48
                ++ C++C e    +++n++ +pCg++ +C+ C +++++    + +Cp Crr+++
  CCD25302.1 31 EDFCPLCIEpldiTDKNFFPCPCGYQ-ICQFCYNNIRQnpeLNGRCPACRRKYD 83
                678******77777************.*********999999*********987 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 9.8
                 HHHHHHH...TT-B-T CS
  zf-C3HC4_3  29 Caekllk...rkkkCp 41 
                 C++ l+    ++++C+
  CCD25302.1 233 CSSYLRGlpcQNPNCM 248
                 7777765777888887 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   3.8e-08   4.3e-05      18      70 .]     163     224 ..     161     224 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 3.8e-08
                 HHHTTSCEEEEEEEEE........TTTSEEEEE.EEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1  18 lFskfGpiksiklvrd........etgkskgfa.fVeFeskedAekAlealngkklggrelk 70 
                 +F+++G+i++i + r+        +  ++ g++ +++F+sk+dA+k++++++g+ ++gr +k
  CCD25302.1 163 YFGQYGRINKIVVNRKsshnndyhSSSSPPGYGvYITFASKDDAAKCIAQVDGTYMDGRLIK 224
                 79*********999998765554445577899878***********************9886 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.9   3.7e-08   4.2e-05     116     203 ..      33     125 ..       8     142 .. 0.70
   2 ?    4.8   0.1     0.014        16     173     206 ..     255     289 ..     215     343 .. 0.62
   3 ?    0.7   0.8      0.25   2.7e+02     211     239 ..     401     429 ..     369     463 .. 0.56
   4 ?   -3.8   0.5         6   6.7e+03     221     242 ..     570     597 ..     538     601 .. 0.42

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.7e-08
        Rtf2 116 iCpltglemngktkfvalrkCG...cVfsekalkevk..sevClvCgkeykeedviplnptkeelellkarleeekakkkkkkkakkkkkaka 203
                  Cpl    ++ + k ++  +CG   c f  + +++    +  C+ C  +y++++v  +  + eel+l +a+l  ++ ++k+k k++k++++ +
  CCD25302.1  33 FCPLCIEPLDITDKNFFPCPCGyqiCQFCYNNIRQNPelNGRCPACRRKYDDDSVRYVVLSPEELKLERAKLARKERERKQKEKERKENEHPN 125
                 5*********************44445555555555444445*************77777778888888888665555555544444443333 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.014
        Rtf2 173 eelellkar.leeekakkkkkkkakkkkkakakgs 206
                 ee++ +++r l++++++++++++++++++++a++s
  CCD25302.1 255 EEADSYNKReLHNRQQAQQQQQQQQQQQQQQAHES 289
                 43333333303333333333332222222222222 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.25
        Rtf2 211 eaaskssseasesskagkkkekkkekkkr 239
                 +++++ s++ ++s++++++++++k+k++ 
  CCD25302.1 401 NNTNNISNSVQTSDSTTNNNNNNKKKNNA 429
                 11111111111122222222222222222 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 6
        Rtf2 221 s......esskagkkkekkkekkkrsla 242
                        +++ +g+  ++  ++++++++
  CCD25302.1 570 AsqyyaiPQQFQGQMPQQLPQQQQQQQQ 597
                 1233333444444444444444443333 PP

>> Baculo_IE-1  Baculovirus immediate-early protein (IE-0)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   3.4   2.5e-07   0.00028     101     135 ..      52      86 ..      19      90 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 2.5e-07
  Baculo_IE-1 101 ccGykicnlcyanlwkfstvyPvcPvcktsfksss 135
                   cGy+ic+ cy n+ +  ++   cP c+  + ++s
   CCD25302.1  52 PCGYQICQFCYNNIRQNPELNGRCPACRRKYDDDS 86 
                  49**************************9998876 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   2.9       1.3   1.5e+03      14      46 ..      92     120 ..      86     130 .. 0.56
   2 !   19.8   1.0   5.4e-07    0.0006      21      54 ..     267     290 ..     161     297 .. 0.79
   3 ?   -1.2  11.9         2   2.3e+03      31      40 ..     590     599 ..     405     606 .. 0.74
   4 ?   -0.3   3.7         1   1.2e+03      35      61 ..     621     646 ..     619     648 .. 0.64

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.3
  SUIM_assoc  14 ltsEeLrkrreaYFEKqeqqqqqqqqqqdppgq 46 
                 l+ EeL+  r     K e++++q++++    ++
  CCD25302.1  92 LSPEELKLERAKLARK-ERERKQKEKER---KE 120
                 8899999888776555.22222222222...22 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 5.4e-07
  SUIM_assoc  21 krreaYFEKqeqqqqqqqqqqdppgqlshprekp 54 
                  r++a          qqqqqq++++q  + +e p
  CCD25302.1 267 NRQQA----------QQQQQQQQQQQQQQAHESP 290
                 33333..........3333333333333333444 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2
  SUIM_assoc  31 eqqqqqqqqq 40 
                 +qqqqqqqqq
  CCD25302.1 590 QQQQQQQQQQ 599
                 2333333333 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 1
  SUIM_assoc  35 qqqqqqqdppgqlshprekpttSsgal 61 
                 q qq  ++ p+q + +++ +t S + l
  CCD25302.1 621 Q-QQAGNQDPQQQPPMKDSSTNSTDLL 646
                 3.4444445566666799999998766 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7  10.1     3e-06    0.0034       3      44 .]      34      79 ..      32      79 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 3e-06
   zf-RING_2  3 CpICleelssads.vlllpCgHvfhreClerwlrssst....CPlCr 44
                Cp+C e+l+ +d+    +pCg+ +++ C ++ +r++++    CP+Cr
  CCD25302.1 34 CPLCIEPLDITDKnFFPCPCGYQICQFCYNN-IRQNPElngrCPACR 79
                ********88888444679**********99.8888888999****9 PP

>> SET_assoc  Histone lysine methyltransferase SET associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.82   9.2e+02      14      32 ..      11      29 ..       5      33 .. 0.80
   2 !   13.5   0.0   3.8e-05     0.043      34      58 ..     194     218 ..     193     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.82
   SET_assoc 14 vedlkkrLkkyeweriled 32
                + d+++ L++y+ +   +d
  CCD25302.1 11 LHDIQNTLSNYDTSFLSDD 29
                689********99877666 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 3.8e-05
   SET_assoc  34 tGyYivFndskeAerCfraedgtkl 58 
                 +G Yi+F+++ +A +C  ++dgt +
  CCD25302.1 194 YGVYITFASKDDAAKCIAQVDGTYM 218
                 69*******************9975 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.35   3.9e+02      31      40 ..      32      41 ..      25      49 .. 0.71
   2 !   12.5   9.0   8.9e-05       0.1      10      43 ..      47      85 ..      34      87 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.35
  Prok-RING_4 31 ssCPlCqrri 40
                   CPlC + +
   CCD25302.1 32 DFCPLCIEPL 41
                 46****7765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 8.9e-05
  Prok-RING_4 10 kailepCgHlvCkeCfdskdls.....sCPlCqrrisks 43
                 +    pCg  +C+ C+++   +     +CP C+r+ +++
   CCD25302.1 47 NFFPCPCGYQICQFCYNNIRQNpelngRCPACRRKYDDD 85
                 555579************97777788*********8876 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8  10.4   1.7e-05     0.019       1      41 []      34      78 ..      34      78 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
                -TTT-S--SS-E....E-TTS--B-CHHHHHHHHC.TSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepn...elleCkHsfCskCirkilks.rkkvkCPlC 41
                Cp+C e + +++    + +C+ ++C+ C+ +i+++ + +  CP C
  CCD25302.1 34 CPLCIEPLDITDknfFPCPCGYQICQFCYNNIRQNpELNGRCPAC 78
                *******999999999******************9877778**** PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00011      0.13      11      51 ..     151     208 ..     140     210 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00011
  Nup35_RRM_2  11 telielVle...hFasfGeIvkhyvp..............kevsvmyvkfesekdaek 51 
                   e+ + Vl+   +F ++G+I+k+ v               +    +y++f+s++da+k
   CCD25302.1 151 YEEVSNVLRsdnYFGQYGRINKIVVNrksshnndyhssssPPGYGVYITFASKDDAAK 208
                  567788999999**********999999999999999888557779*********997 PP

>> zf-UDP  Zinc-binding RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.4   0.00012      0.14       7      61 ..      30      83 ..      25      90 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
      zf-UDP  7 ngqiCqiCgddvgltedgelFvacnecafpvcrpcyeyerk..dgnqsCPqCktryk 61
                ++  C +C + +++t+  + F  c  c++ +c+ cy+  r+  + n  CP C+ +y 
  CCD25302.1 30 EEDFCPLCIEPLDITD--KNFFPC-PCGYQICQFCYNNIRQnpELNGRCPACRRKYD 83
                6778999999888764..457777.5***********9998666788******9996 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   9.5   0.00021      0.24       2      44 .]      34      80 ..      33      80 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
   zf-RING_5  2 CnkCfekl.skeekfyltsCgHifCekClkkll...ekeavCpiCrk 44
                C+ C e+l   +++f+  +Cg  +C+ C ++     e + +Cp+Cr+
  CCD25302.1 34 CPLCIEPLdITDKNFFPCPCGYQICQFCYNNIRqnpELNGRCPACRR 80
                99******888888*****************99999*********95 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.48   5.4e+02     189     208 ..     109     121 ..      79     153 .. 0.56
   2 ?    4.0   0.2     0.011        12     429     482 ..     256     309 ..     204     316 .. 0.70
   3 ?   11.6   0.4   5.4e-05     0.061     428     524 ..     397     493 ..     359     507 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.48
       CDC45 189 rkrrrsepsakklrrqlkke 208
                 r+       +k++++++k++
  CCD25302.1 109 RE-------RKQKEKERKEN 121
                 01.......11111111111 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.011
       CDC45 429 sekeaeesekeseeeeeeeeeeeaeeeekeeeewvknFweAydaLdkknidlLk 482
                 ++++++++e ++++++++++++++++++++ +e  +n +++ + L+++++ lL+
  CCD25302.1 256 EADSYNKRELHNRQQAQQQQQQQQQQQQQQAHESPSNIYNSRTPLNNHHVPLLS 309
                 333444444444455566666666666666666666666666666666666665 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 5.4e-05
       CDC45 428 ksekeaeesekese.....eeeeeeeeeeaeeeekeeeewvknFweAydaLdkknidlLkkglelaqslqraivrtgtsliekkq.irtlrafrlavlk 520
                 ++++++++     +     +++++++++++++++k++++  +++++ ydaL+   ++ L + l+   + + + ++  + +i+ +   +  + f +  +k
  CCD25302.1 397 NNNNNNTN-----NisnsvQTSDSTTNNNNNNKKKNNASIENEYVDPYDALN-VAVKFLDSRLNSFDNYKNETFKLKSNIIDDETfGQYPSLFSWNNIK 489
                 22222222.....1233567788888888899999999**************.59***************99999999999988833444567777777 PP

       CDC45 521 dgpd 524
                 ++++
  CCD25302.1 490 ESNE 493
                 7655 PP

>> FYDLN_acid  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.6    0.0017         2      28      66 ..      74     121 ..      56     134 .. 0.59
   2 ?    4.8   0.6      0.04        45      26      70 ..     241     287 ..     224     299 .. 0.55
   3 ?   -1.3   0.3       3.2   3.6e+03      54      59 ..     417     422 ..     387     458 .. 0.51

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0017
  FYDLN_acid  28 vcpkcgeefepeev.........lksraaaaeaeeakkkkeeeedeed 66 
                  cp+c  +++ ++v         lk ++a+ +++e+++k++e+e++e+
  CCD25302.1  74 RCPACRRKYDDDSVryvvlspeeLKLERAKLARKERERKQKEKERKEN 121
                 5************97777666552222222222222122212221211 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.04
  FYDLN_acid  26 Pivcpkcgeefepeev...lksraaaaeaeeakkkkeeeedeedeeee 70 
                 P   p+c    ep e     ++r+  ++++++ +++++++++++++++
  CCD25302.1 241 PCQNPNCMFLHEPGEEadsYNKRELHNRQQAQ-QQQQQQQQQQQQQAH 287
                 67777787777777763432222222222222.222222222222222 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.2
  FYDLN_acid  54 akkkke 59 
                 ++++++
  CCD25302.1 417 TNNNNN 422
                 111111 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   2.2       0.9     1e+03      19      41 ..      32      53 ..      28      53 .. 0.78
   2 ?    3.8  10.7     0.059        66      14      42 .]      51      78 ..      34      78 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.9
  zf-C3HC4_4 19 sfClsCisslqkepdgeqllCpl 41
                 fC  Ci+ l    ++  ++Cp+
  CCD25302.1 32 DFCPLCIEPLDITDKNF-FPCPC 53
                58999999988887776.88885 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.059
  zf-C3HC4_4 14 leCGhsfClsCisslqkepdgeqllCplC 42
                 +CG+++C+ C +++ ++p+ +  +Cp C
  CCD25302.1 51 CPCGYQICQFCYNNIRQNPELN-GRCPAC 78
                68*****************765.9****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3340  (0.18629); expected 358.6 (0.02)
Passed bias filter:                      689  (0.0384294); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        43  (0.00239835); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.92u 0.27s 00:00:01.19 Elapsed: 00:00:00.44
# Mc/sec: 4477.78
//
Query:       CCD25303.1  [L=323]
Description: hypothetical protein NDAI_0E04860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-19   68.4   0.2    1.3e-18   67.4   0.2    1.5  1  U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N
    9.5e-16   57.4   0.0    2.2e-15   56.2   0.0    1.7  1  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
    3.7e-06   27.0   0.0    9.4e-06   25.7   0.0    1.7  1  RRM_7        RNA recognition motif


Domain annotation for each model (and alignments):
>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.2   2.2e-22   1.3e-18       2      93 .]      12     102 ..      11     102 .. 0.94

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 2.2e-22
  U1snRNP70_N   2 kLPpnLlkLFaprpplpylppldydpekrktkkkitGvaafl.selkedeeeqeppektetkeekkererkekkekkeekleealeeydPkeD 93 
                  k  ++++  F+prppl++++p+dy+ ++r+t+++itG+++++ s+l   ++ +e++++t t+ e +e+++    +k +++ +eal++++P+eD
   CCD25303.1  12 KISSDISTIFKPRPPLRHFKPTDYPVHRRRTNPNITGISKYInSHL--LSYVKEYSTTTTTNSEVTENNEVVLGNKIAQENKEALDKWNPHED 102
                  67899**************************889********5455..68******************************************9 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0   3.7e-19   2.2e-15       1      57 [.     114     172 ..     114     185 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 3.7e-19
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE..TTTSEEEEEEEEESSHHHHHHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd..etgkskgfafVeFeskedAekAle 57 
                 +fVg Lp+d++e +L ++F kfG+i++i++vrd  +++kskg++f+ F+++ + + A +
  CCD25303.1 114 IFVGRLPYDIDELQLQKHFLKFGQIEKIRIVRDkfNNNKSKGYGFIVFHDPISSKMACK 172
                 8**************************************************99998876 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.6e-09   9.4e-06       2      63 ..     112     167 ..     111     182 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.6e-09
       RRM_7   2 rkvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksv 63 
                 r +FvG lP Di+e +l++ f +fg++  +  +  + k ++    +  kgy f+vf+d  s 
  CCD25303.1 112 RTIFVGRLPYDIDELQLQKHFLKFGQI--EKIRIVRDKFNN----NKSKGYGFIVFHDPISS 167
                 679**********************86..433444443332....3458*******987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2611.95
//
Query:       CCD25304.1  [L=874]
Description: hypothetical protein NDAI_0E04870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-55  185.1   0.8    1.4e-54  184.3   0.2    1.7  2  NAT             NAT, N-acetyltransferase, of N-acetylglutamat
    1.2e-29  103.3   0.0    2.4e-29  102.2   0.0    1.6  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
    6.6e-25   88.1   0.0    1.2e-24   87.2   0.0    1.4  1  AA_kinase       Amino acid kinase family
  ------ inclusion threshold ------
      0.028   14.5   0.0      0.079   13.1   0.0    1.8  1  DapB_N          Dihydrodipicolinate reductase, N-terminus


Domain annotation for each model (and alignments):
>> NAT  NAT, N-acetyltransferase, of N-acetylglutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.3   5.8e+03      47      66 ..      88     107 ..      71     118 .. 0.64
   2 !  184.3   0.2     3e-58   1.4e-54       1     169 [.     338     510 ..     338     511 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.3
                 TSSXHHHHHHHHHTSXEEEE CS
         NAT  47 rkldvkdYldrlkgkiakiy 66 
                 + ++  +Y+ +++++++ ++
  CCD25304.1  88 EVEQYLKYFTSVSQQQFAVI 107
                 33445566667777777766 PP

  == domain 2  score: 184.3 bits;  conditional E-value: 3e-58
                 GHHHHHHSSSTSSEEEE---XEEEESSCCCSSXCCHHHHHHTTST...TTSSXHHHHHHHHHTSXEEEEEETTXSEEEEE......EXSSSSXEEEEEE CS
         NAT   1 dlqkelftdsgagtlirrGlkvitvkslkelidlekLksliedsf...krkldvkdYldrlkgkiakiyiaedyeglAivtwedp.keekevayLdkFa 95 
                 dlqkelftdsgagt+irrG+k+ +++sl+++ +++ L+ ++e++    ++k++v++Yl++l++ ++  y++e++e+ A+v + +   ++ +va+LdkF 
  CCD25304.1 338 DLQKELFTDSGAGTMIRRGYKLLKRSSLSDFPSTDSLRVVLERDSdiaSGKQTVASYLKQLETCNFVSYADEPMEAFAVVKKTKNgSSNDKVAKLDKFL 436
                 79******************************************99999*******************************65332134558******** PP

                 EXHHHHHTTHHHHHHHHHHHHXSSEEEEEETTXTTHHHHHHCXSEEEEETTEEEEEESXXXHHHHHHHHHHHHC CS
         NAT  96 vlkssqgsgvsdvvfkalkkdfpkLvWrsrednpvnkWyfersdGslkksqwvlfWyGlkdlkeveelvesfkd 169
                 +++s+++++v+d+vf+a+ +dfp+L+W+++e++p+++W+f++s+Gs+ k+++vlfWyG++dl++v+elv +f++
  CCD25304.1 437 CSDSAWLNNVTDNVFSAINRDFPALQWTVHENDPNIAWHFDKSEGSYLKNGKVLFWYGVEDLNTVSELVGDFVK 510
                 *********************************************************************99976 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0   5.4e-33   2.4e-29       1     120 [.     553     678 ..     553     679 .. 0.95

  Alignments for each domain:
  == domain 1  score: 102.2 bits;  conditional E-value: 5.4e-33
                     EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTTTTTSBHHHHSGGGTTTECEBEEE.GGGGGCTT-SEEEE-SCHHHHHHHHHHH..HHTTS. CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLeehpevelvvllsssrsaGkklaeavkaleegkdlkved.vdeeelkevdivflalpagvskelapkl..aeagv. 91 
                     +va++Ga+Gy+G++l+ l+++hp++e+++++s++  aG+kl  + k+   +++l+ ed +  e+  +vd++++alp++vs+++++++  +++g  
      CCD25304.1 553 RVALIGARGYTGRNLVDLINNHPYLEVAHVSSREL-AGQKLPGYTKSEIIYENLTTEDlIRLESKGDVDVWIMALPNNVSEPMVQAIasVKNGKs 646
                     79****************************99999.**********************9999999**********************77777778 PP

                     EEEESSSTTTTST..TSEBE-HHHH.GGGGGG CS
  Semialdhyde_dh  92 kviDlssdfRlkd..davyvlpevn.reaikk 120
                     k++Dls+d+R+ +  ++ y+lpe+n re+i++
      CCD25304.1 647 KIVDLSADHRFVPetEWAYGLPELNdRERISN 678
                     ***********9999**********7887765 PP

>> AA_kinase  Amino acid kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   2.7e-28   1.2e-24       3     228 ..     105     320 ..     103     327 .. 0.94

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 2.7e-28
                 EEEEE-TTCCCCTCCHHHHHHHHHHHHHHHHTTEEEEEE--HHHHHHHHHHTCCCCCHHHC....E..HHHHHHHHHHHHHHHHHHHHHHHHHTTHGEE CS
   AA_kinase   3 vVvKlGGssltdkeeaslrrlaeqiaalkesgnklvvVhGggsftdgllalksglssgelaaglrstleeagevatrdalaslgerlvaallaaglpav 101
                  V+K+GG++++d    +l++la  +a l   g  ++v hG g++++g l++ +g+++++++ g+r t+e ++ v++    +  + +lv+al + g++a+
  CCD25304.1 105 AVIKVGGAIISD----NLQELASCLAFLYHVGLYPIVLHGTGPQVNGRLEA-QGIEPDYID-GIRITDEHTMAVVR-KCFLEQNLKLVTALEKLGVRAR 196
                 7**********3....4889********999********************.*********.*************9.9999****************** PP

                 EE-GGGTCEECCCE...HHHTTTCEEECCHHHHHHHTT-EEEEESEEEEETTTEEEEE-HHHHHHHHHHHCTSSEEEEEESSSSCESSTTTTCCTTCEC CS
   AA_kinase 102 glsaaaldateagr.degsdgnvesvdaeaieelleagvvpvltgfigldeegelgrgssDtiaallAealgAdkliiltdVdGVydadpkkvpdarll 199
                 ++++  ++a+  ++ +++ +g+++ v+++ ie +++ g +p+lt ++  ++ g+ +++++D++a  lA  +++ k+++l +  G+ + + k+     ++
  CCD25304.1 197 PITSGVFTAEYLDKdKYKLVGDITGVTKDPIEASIKVGALPILTSLA-ETPSGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGETKE-----KV 289
                 *********************************************97.99999*99******************************997655.....58 PP

                 CEEEHHHCHH..CSSS.TTTHHHHCHHHHHH CS
   AA_kinase 200 peisvdeaee..saselatgGmkvkhpaala 228
                 + i+ de  +   ++ ++++G+k k+++  +
  CCD25304.1 290 SMINLDEEYDdlMKQSWVKYGTKLKIKEIKE 320
                 88888887777888***********998765 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05     0.079       2      72 ..     553     623 ..     552     648 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
                 EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTCSTTTTTBHHHHSSSS.--S-BEBSSHHHHHHH..-SEEE CS
      DapB_N   2 kvavvGasGrmGkevvkaveeaedlelvaavdrkeselegkdagellglg.klgvavtddleevlek..advli 72 
                 +va++Ga+G  G+++v+++++++ le++ + +r+   l g+++   ++++   +  +t+dl ++  k  +dv+i
  CCD25304.1 553 RVALIGARGYTGRNLVDLINNHPYLEVAHVSSRE---LAGQKLPGYTKSEiIYENLTTEDLIRLESKgdVDVWI 623
                 79************************99998885...4677666666665455666667777776665667776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.68u 0.24s 00:00:00.92 Elapsed: 00:00:00.39
# Mc/sec: 6713.30
//
Query:       CCD25305.1  [L=153]
Description: hypothetical protein NDAI_0E04880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-45  155.8   0.0    1.2e-45  155.6   0.0    1.0  1  P16-Arc   ARP2/3 complex 16 kDa subunit (p16-Arc)
  ------ inclusion threshold ------
      0.019   15.3   0.0       0.04   14.2   0.0    1.5  2  Utp12     Dip2/Utp12 Family


Domain annotation for each model (and alignments):
>> P16-Arc  ARP2/3 complex 16 kDa subunit (p16-Arc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.0   1.3e-49   1.2e-45       1     148 []       3     153 .]       3     153 .] 0.96

  Alignments for each domain:
  == domain 1  score: 155.6 bits;  conditional E-value: 1.3e-49
                 XXXXXXXXXXXXXX..XXXXXXXX.XXXXX---GGGGTHHHHHHHHHHS--HHHHHHHTSS---S-S-HHHHHHHHHHHHHHHHTS-GGGHHHHHHHS- CS
     P16-Arc   1 afRkidvDaldedk..fkeeelap.espeeseaevqqkesevrsllrsgdaeeALkaalknppygakeqaakeralqlvlevLssikasdiekavksld 96 
                 ++R+id+Da+d+++  +++++l+p  ++ ++ a++q+k s++rsl +sgd+++A++ a+++ppy+a+ +++k++++++vl++L++++++di+++vksld
  CCD25305.1   3 DWRRIDIDAFDPESgrLTAQDLIPpYTTVVTLADLQPKISQLRSLSSSGDVNSAINLATTDPPYSAD-ENTKAEYFRAVLDTLKQVRQADITNIVKSLD 100
                 6************777********5455599************************************.7****************************** PP

                 HHHHHHHHHHHHHHTT---.----SHHHHHHHHHHHTT-SHHHHHHTT--X.. CS
     P16-Arc  97 keeldvLmkYiYkgmesps.ekssavLLsWhekvvevaGvgsIvrvltdrrtV 148
                 ++++dvL+k++Ykgm+ p+ +k++++LL+W+ek++++aGv ++v++l+dr tV
  CCD25305.1 101 SKQHDVLIKFLYKGMSIPEgQKQGGILLTWFEKLTQIAGVTPVVHYLSDRNTV 153
                 *******************9******************************998 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.1   9.5e+03      73      81 ..      37      45 ..      27      50 .. 0.48
   2 ?   14.2   0.0   4.4e-06      0.04       5      61 ..      80     137 ..      78     145 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.1
                HHHHHHHHH CS
       Utp12 73 lvpaLrslq 81
                l+p++++l+
  CCD25305.1 37 LQPKISQLR 45
                334333333 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 4.4e-06
                 HHH.HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH...HTTTTHHHHHHHHHHHHHH CS
       Utp12   5 lleevlekippsdirltvlrLpssyvlkLLeflaerl..aeksphlelllrwlkallrv 61 
                 +l+ +l++++ +di ++v++L+s+    L++fl + +   e +++   ll w + l+++
  CCD25305.1  80 VLD-TLKQVRQADITNIVKSLDSKQHDVLIKFLYKGMsiPEGQKQGGILLTWFEKLTQI 137
                 566.9****************************99874334445999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      606  (0.0338); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 1342.71
//
Query:       CCD25306.1  [L=915]
Description: hypothetical protein NDAI_0E04890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-183  610.8   0.0   2.4e-183  610.5   0.0    1.1  1  Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
    3.2e-23   81.5   0.0    7.9e-23   80.3   0.0    1.7  1  Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
    1.7e-17   63.8   0.0    4.2e-17   62.5   0.0    1.8  1  ATP-cone         ATP cone domain


Domain annotation for each model (and alignments):
>> Ribonuc_red_lgC  Ribonucleotide reductase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  610.5   0.0  3.9e-187  2.4e-183       1     524 []     216     742 ..     216     742 .. 0.97

  Alignments for each domain:
  == domain 1  score: 610.5 bits;  conditional E-value: 3.9e-187
                      EEE......BSS-EEEE-X..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX CS
                      xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC   1 ssCfvlsv.edslesIletvkeaallskaggGvGlnlsklRakgslvkgtegaasGpvsfmklidavadvvkqgG.kRrGAamvylevwHpDie 92 
                      ssCf++ + +ds+e+I++t+ke+al+sk++gG+Gl+++++R++gs+++gt+g+++G+++++++++++a++v+qgG kR+GA ++yle+wH+Di+
       CCD25306.1 216 SSCFLVAMkDDSIEGIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMVRVFNNTARYVDQGGnKRPGAFALYLEPWHADIF 309
                      8******98999********************************************************************************** PP

                      XXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........................XXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC  93 kfidaKekntgeeenrlsnlnisvgvpdlFmeavkedkdwtLfsPrtvvkleklygeefeeeyeeleekakikkkevkakeLfeeiaesawetg 186
                      +fi+++ kn+g+ee r+++l+ ++++pdlFm++v+++++wtLfsP+ ++ l+++ygeefee y+++e++   + k++ka++L+ +i+e++ etg
       CCD25306.1 310 DFIEIR-KNHGKEEIRARDLFPALWIPDLFMKRVEQNGQWTLFSPSSAPGLSDCYGEEFEELYTRYEREG--RGKTIKAQKLWYSILEAQTETG 400
                      ******.**************************************************************3..4469****************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 187 ePgvlfkDtiNrrnvlekakggkIratNlCgEiplleyes.vavCnLasinLakfvkkdeegk.kefdwdelkkviqlvvraLdnvidvnkypl 278
                      +P++l+kD++N+++++  ++ g I+++NlC+Ei+ ++ ++ +avCnLas+ L++f+++ e+gk  ++++++l++  ++++r+L+ vid n+yp+
       CCD25306.1 401 TPFILYKDACNEKSNQ--KNLGVIKSSNLCCEIVEYSAPDeTAVCNLASVALPAFIETSEDGKtSTYNFKKLHEISKVITRNLNRVIDRNYYPV 492
                      ****************..999*****************9999**************98888762578*************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx RF
  Ribonuc_red_lgC 279 peiekntkktRriGlGvmgladalaklgipydseealkfarkitelltyyaykaSvelAkergpfplfekskyskgilpvdefeeke..kedwe 370
                      pe++++++++R+i lGv+glad+++ l++p++s+ea  ++++i+e++++++++aS+elA++ gp+ +fe s+ +kgil++d++++k    +dw+
       CCD25306.1 493 PEARNSNMRHRPIALGVQGLADTYMLLRMPFESDEAKILNKQIFETIYHASLEASCELAQKDGPYLNFEDSPSAKGILQMDMWNQKPfgMWDWD 586
                      ***********************************************************************************6554779**** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 371 eLreeikkyGlrnamvtalaPTgsiSliagtssgiePifalvykksvtvgeflevnpvfeeeLkklglwseellkki...lesvqgleeipeei 461
                      +Lr++i+kyGlrn+ ++a +PT+s+S+i g ++++eP+++++y+++v +gef +vnp+++++L +lg+w++ ++++i    +s+q+l+++p+e+
       CCD25306.1 587 TLRNDIRKYGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDGMKQHIiteNGSIQNLPNVPDEL 680
                      *****************************************************************************866666*********** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Ribonuc_red_lgC 462 krvfktaldidqedhikaqaaiqkwidqsiSktinlpneatvedvkelyllAwklGlKgvtyY 524
                      k+++kt ++i+q+ +i+++a++  +idqs S++++l    t+ +++++++++wk+GlK+ +yY
       CCD25306.1 681 KKLYKTIWEISQKTIIDMAADRSIYIDQSHSMNLFL-RAPTMGKLTSMHFYGWKKGLKTGMYY 742
                      ************************************.9************************9 PP

>> Ribonuc_red_lgN  Ribonucleotide reductase, all-alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.0   1.3e-26   7.9e-23       2      82 ..     142     212 ..     141     213 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 1.3e-26
  Ribonuc_red_lgN   2 kltynalkvledrYllkdengeivEspqqmfmRvAlalaiaealydkleedkdlaeefydlmssqkflpasPtlmnaGtel 82 
                      +++y+++k+le++Yll+ + g+++E+pq+++mRvAl++++         +d + a e+y+lms ++f++asPtl+naGt++
       CCD25306.1 142 QFNYFGFKTLERSYLLRIN-GQVAERPQHLIMRVALGIHG---------RDIKAALETYNLMSLRYFIHASPTLFNAGTPK 212
                      699****************.88******************.........99****************************96 PP

>> ATP-cone  ATP cone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   7.1e-21   4.2e-17       1      86 []       1      89 [.       1      89 [. 0.98

  Alignments for each domain:
  == domain 1  score: 62.5 bits;  conditional E-value: 7.1e-21
                -EEE-TTS-EEE--HHHHHHHHHHHHHH.-HHHHHHHHHHHHHHHHHHHIIT-BHHHHHHHHHHHHH....HSS-HHHHHHHHHHHHHHHH CS
    ATP-cone  1 ikViKRdGtvepfdvekIkraiekAceg.seeeideiaeeveaevrkrlrdgisteeIqdlvektli....ehpdyavaaayilyrnlrke 86
                ++ViKRdG++ep++ +kI+++i++ c g ++++id++  +v +++ ++ ++g++t e+++l ++t++     hpdya++aa++  +nl+k+
  CCD25306.1  1 MYVIKRDGRKEPVKFDKITARISRLCYGlDPARIDAV--KVTQRIISGVYEGVTTIELDNLAAETCAymttVHPDYATLAARLAISNLHKQ 89
                89**************************999999999..**************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 6435.42
//
Query:       CCD25307.1  [L=801]
Description: hypothetical protein NDAI_0E04900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.4e-166  555.3   2.7   1.4e-166  555.3   2.7    1.5  2  Sec6          Exocyst complex component Sec6
  ------ inclusion threshold ------
      0.024   14.7   0.9       0.24   11.5   0.1    3.1  3  AnfG_VnfG     Vanadium/alternative nitrogenase delta subunit
        6.3    6.6  10.9       0.07   13.0   1.1    2.7  3  Yuri_gagarin  Yuri gagarin


Domain annotation for each model (and alignments):
>> Sec6  Exocyst complex component Sec6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2     0.068   4.1e+02     316     386 ..      83     177 ..      34     178 .. 0.55
   2 !  555.3   2.7  2.4e-170  1.4e-166       1     552 [.     176     768 ..     176     784 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.068
                 .......................HHHHHHHHHHHHHHHHH.........HHHHHC.........---HHHHHHHHHHHHHHHHHHHHHHCHHHHC CS
        Sec6 316 e..................skpglveyliAlaNdqlkcad......yaeslsskylelvsskyeeriteefeelldgfvdlskeaisalleiifn 386
                                    +   + + ++ + N   k+ +      ++++++s    l++  y+  i ++f++ ++  +++s+  ++ +++ +fn
  CCD25307.1  83 SidrydvifdatklydtinTTSAIYDKIMNFTNLVDKMDQmleqelSMDAIESGCPYLLDIHYSLTIARDFQDRMNVMAQVSTDDVQRIVQKVFN 177
                 24444444444444444444444444444444444444446666666666666666667777777777777777777777777777777777775 PP

  == domain 2  score: 555.3 bits;  conditional E-value: 2.4e-170
                 HHHHHHHHHHHHHHHHHHHHSTTSSSCHHHH....HHHHHHHHHHHHHCCCCS.----TT--..................................... CS
        Sec6   1 fskvdkliekFdkllweiirslielvregntslvvrlvkiverEekeDeklealreltkkekdeedaanfr............................ 71 
                 f+kv++l++kFd+ll+++i++l+e+vr+g+ sl++rl+ki++ Ee+eD++++a+r++ kk++++++++++r                            
  CCD25307.1 176 FNKVSGLVTKFDQLLESLIYDLVEIVRSGQISLAIRLFKIIDLEEREDLRITAIRNIIKKKEIQAEKSSIRklpnnknaarlledehsiveyptpngly 274
                 89**********************************************************8886667777788************************** PP

                 ...........-----HHHHHHHHHHHHHHHHCTS--S---TT--HHHHH...HHHHHHHHHHHHCCCCCS-TTT-HHHHHHHHHHHHHHHHHHHHTTS CS
        Sec6  72 ..........arrprnykkkflealeesveerfeeckekfseddkklellenldwlledLevVkdelaplfPpswkifktyvkiYhnklhdllqelvss 160
                           ++ pr+y+++f+++l++s++++f e+++++++  k +e+l+nldw++++L + k++++ ++ ++w+if+  ++ Y+n++h l++elv+s
  CCD25307.1 275 neilsgtiasRTLPRGYRNFFFNKLQQSIADMFIEVRKEYKDE-KTFEVLNNLDWVFNELLMFKEHISLYCSKHWNIFDKAYEYYYNEMHILVNELVES 372
                 **************************************99987.56***************************************************** PP

                 ---HHHHHHHHHHHHHHHH.HTTTSSHHHC.CCC---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---..EESSSEE-CHHHHHHHH CS
        Sec6 161 eleaedilailewvkkYskklsklnpelefkkkelkpllldekkeeLledYlklivkkmkeWldnllktEvkkftereeppeededglyvlplpvdvfq 259
                 e+e++ il+il+++k ++++l+k   +++fkkk++k+++++e+ke+L++dYl+liv+km+eW+ nl k E+  f er +pp+ d +gl++l++++++fq
  CCD25307.1 373 EPETIIILDILDFDKSFQQTLIK---DFGFKKKDIKSIIGPEQKEKLFKDYLNLIVEKMTEWISNLEKAEFVVFLERATPPHIDPEGLLFLDGTKTCFQ 468
                 ***********************...************************************************************************* PP

                 HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSTT......................HHHHHHHHHHHHHHHHH...HHHHHC... CS
        Sec6 260 mlaeqvdvaaeskqakilvgvleelsellksrqdawqelleeelkkymsvknneree.........skpglveyliAlaNdqlkcadyaeslsskylel 349
                 m+++qv+va++s+qakilvgv+e++ +ll  rq+ w++ +++e+k+  ++++ ++ +         +++gl+eyliA+ Ndq+++ady+++ls ky +l
  CCD25307.1 469 MFTQQVEVASGSGQAKILVGVIEKFTNLLLIRQKHWIANINSEVKRLLRYNELYDIDpqnipeedqCPGGLLEYLIAVSNDQMRAADYTMALSTKYGNL 567
                 *****************************************************9999****************************************** PP

                 ......---HHHHHHHHHHHHHHHHHHHHHHCHHHHCCTTCCCCHHHHTTTSSHHHHHHHHHHHHTTTTGGGS.S-HHHHHHHHHHHHHHHHHHHHHHH CS
        Sec6 350 vsskyeeriteefeelldgfvdlskeaisalleiifnDLkpalsklftkkWytgelmeqivetiedYlndykeylspelfevlleelldelvveYlral 448
                 vs+ ye++i+ ++++ ldgf+++ k+  + ll+iif+DLk +++++f+k+Wytg++++qi +t+ +Yl d+k ++sp +f+v++ + +de  ++++ al
  CCD25307.1 568 VSKVYEKEISIHMNRSLDGFAEVVKCTSNGLLSIIFDDLKGPYHEIFSKSWYTGSQVQQISDTLNEYLVDIKAQMSPVVFSVFIGNIIDESFLQFINAL 666
                 *************************************************************************************************** PP

                 CSS----SHHHHHHHHHHHHHHHHHHHHHHHHTT-...---CCCCTTHHHH...HHHH--SHHHHHHHHHHHHHS-TT--HHHHHHHHHCCSS-STCHH CS
        Sec6 449 rkkklkfaakkqkkfaekikrDaeklydffeklgs.eedaaylkqklraielllelleledpdavplevetllesypdisedhveavlkaRkDldksev 546
                    ++ +   k++kf  ++krD+e+++++f k+++ e+++++++ +++++e++  +l++ + d++++ +++ll +yp  ++d++ ++l +RkD+d+s++
  CCD25307.1 667 NEHHSFK--SKNNKFLGCMKRDFEIFFELFAKFVPeENKQEIIDVRFKVMEYFI-DLSCGPLDEIMDTWANLLVEYPETPIDFLTGILTCRKDVDSSDR 762
                 9999999..**************************99999***********884.5666666************************************* PP

                 HHHHHH CS
        Sec6 547 kelveq 552
                 k+++++
  CCD25307.1 763 KHMLKD 768
                 **9875 PP

>> AnfG_VnfG  Vanadium/alternative nitrogenase delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1     4e-05      0.24      22      96 ..     105     182 ..     100     189 .. 0.81
   2 ?   -3.1   0.0       1.4   8.1e+03      40      68 ..     342     370 ..     334     381 .. 0.62
   3 ?   -1.8   0.0      0.54   3.3e+03      19      45 ..     613     639 ..     610     644 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4e-05
                 SHHHHHHHHHHHHHHHHHHHTT-----SSHHHHHHHHH...HHHHHHHHHHH-GGGCTS-CHHHHHHHHHHHHHHHHH CS
   AnfG_VnfG  22 RsWDReeqiegilektaklltgekvkketpedklyyvd...avllaealkerfpwlselskeeikellkelkerldel 96 
                   +D+  +  ++++k+ ++l +e   +   +   y  d   ++++a+++++r+  ++++s ++++++++++ +++  l
  CCD25307.1 105 AIYDKIMNFTNLVDKMDQMLEQELSMDAIESGCPYLLDihySLTIARDFQDRMNVMAQVSTDDVQRIVQKVFNKVSGL 182
                 567888899999999999998877666666666677774446789***************************998765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.4
                 HHTT-----SSHHHHHHHHHHHHHHHHHH CS
   AnfG_VnfG  40 lltgekvkketpedklyyvdavllaealk 68 
                 l + ++ +  + +  +yy +  +l+++l 
  CCD25307.1 342 LYCSKHWNIFDKAYEYYYNEMHILVNELV 370
                 44555555555555667777777766654 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.54
                 G-SSHHHHHHHHHHHHHHHHHHHTT-- CS
   AnfG_VnfG  19 fhsRsWDReeqiegilektaklltgek 45 
                  +s+sW   +q+++i +++ + l++ k
  CCD25307.1 613 IFSKSWYTGSQVQQISDTLNEYLVDIK 639
                 589999999999999999998888765 PP

>> Yuri_gagarin  Yuri gagarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   1.1   1.2e-05      0.07     113     176 ..      18      82 ..       7     126 .. 0.83
   2 ?   -1.8   0.6      0.38   2.3e+03     131     184 ..     181     236 ..     154     261 .. 0.60
   3 ?   -3.2   0.1         1   6.1e+03      34      58 ..     301     325 ..     297     329 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.2e-05
  Yuri_gagarin 113 rkvrelaee.lkgeeeqrvelvdkyekllasfeeqckelkranrrvqslqerlsqveklqeelrt 176
                    ++r++ e+ lk++ +   +l +  ek  +  +e  + l  +++ v++++erl+ v+kl +e ++
    CCD25307.1  18 ERIRDIKEQfLKQKSTIEYQLNKESEKYYGNVQESLNLLNTSQKSVNAIKERLNDVDKLSKESKS 82 
                   56899988747888888999999************************************999764 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.38
  Yuri_gagarin 131 elvdkyekllasfeeqckelkranrrvqslqerlsqveklqe..elrte..rkilree 184
                    lv+k+++ll s+     e+ r+     sl  rl ++  l+e  +lr    r+i++++
    CCD25307.1 181 GLVTKFDQLLESLIYDLVEIVRSG--QISLAIRLFKIIDLEEreDLRITaiRNIIKKK 236
                   577888888877776666665543..34777777777777541145532124544432 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1
  Yuri_gagarin  34 aavmdifeekseqeqkekeflvane 58 
                    +++d+f e  ++ ++ek+f v n+
    CCD25307.1 301 QSIADMFIEVRKEYKDEKTFEVLNN 325
                   6799999999999999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1365  (0.0761336); expected 358.6 (0.02)
Passed bias filter:                      539  (0.030063); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 5651.21
//
Query:       CCD25308.1  [L=123]
Description: hypothetical protein NDAI_0E04910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-07   31.9   0.9    1.5e-07   31.6   0.9    1.2  1  Tctex-1        Tctex-1 family
  ------ inclusion threshold ------
      0.038   13.4   0.7      0.059   12.8   0.4    1.4  2  Peptidase_C65  Peptidase C65 Otubain


Domain annotation for each model (and alignments):
>> Tctex-1  Tctex-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.9   1.6e-11   1.5e-07      32      94 ..      44     108 ..      18     122 .. 0.76

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.6e-11
                 HHHHHHHHHHHHTS.SS..SCEEEEEEEEEETTTS.......-EEEEEEEES-TTT-EEEEEEECTTSEE CS
     Tctex-1  32 iinsilkalksestelelpryKfivnvtivqkkgq.......gmhsasgaywdektDgmvsfkyenkgld 94 
                  i +il++l++ s+     +yK++v++t +++++        +++++ ga+w++++Dg  +++ ++k+ d
  CCD25308.1  44 WIRNILQRLNKFSS-----SYKYVVSMTCLESSKDqntqnnySISTSFGAIWNPQKDGQFTYRINSKHSD 108
                 47899999997777.....9*********9955556999999**********************666544 PP

>> Peptidase_C65  Peptidase C65 Otubain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4   6.6e-06     0.059      84     158 ..       7      81 ..       1      83 [. 0.88
   2 ?   -1.5   0.0      0.15   1.4e+03      35      54 ..      82     101 ..      74     102 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.6e-06
                    HHHHHHTT--HHHHHHHHHHHHHHHHHHHTTSS-HH....HHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHG CS
  Peptidase_C65  84 kealeslgfdeevvedfleaflellkkiekkteeseekaeellkafneqeesdyivvflRlltsaelkthadeye 158
                    + +l+++ f++e + df+e  ++ + +  +++  ++    ++l+++n+ ++s   vv +  l s++ ++ +++y+
     CCD25308.1   7 EVDLSQAPFSSEKLIDFIESSYDSIVNADDESALKDIWIRNILQRLNKFSSSYKYVVSMTCLESSKDQNTQNNYS 81 
                    56788999999***********99999998888877666**************************9999999995 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.15
                    HHTTEEEEE-B--SSTHHHH CS
  Peptidase_C65  35 lsekYssiRrvrgDGnCfyR 54 
                    +s+++  i++ ++DG+  yR
     CCD25308.1  82 ISTSFGAIWNPQKDGQFTYR 101
                    6889999********98888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 946.74
//
Query:       CCD25309.1  [L=131]
Description: hypothetical protein NDAI_0E04920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-14   54.6   2.1    1.1e-14   54.6   2.1    1.7  2  DUF202    Domain of unknown function (DUF202)
  ------ inclusion threshold ------
       0.46   10.3   3.0        1.2    9.0   3.0    1.9  1  DUF5337   Family of unknown function (DUF5337)


Domain annotation for each model (and alignments):
>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   2.1   1.2e-18   1.1e-14       1      66 [.      24      84 ..      24      86 .. 0.92
   2 ?   -1.1   0.1      0.29   2.6e+03      53      61 ..     107     115 ..      99     127 .. 0.52

  Alignments for each domain:
  == domain 1  score: 54.6 bits;  conditional E-value: 1.2e-18
      DUF202  1 rdglAnERTfLaWlRtslalialglallrffltgepsalgkilglilivlgiltllvglvrylrrq 66
                ++++AnERTfL+Wl ++++l++lg++ll+f   g++   gki + ++  +++ t++++lv+y++r+
  CCD25309.1 24 KVFFANERTFLSWLNFTVMLGGLGVGLLNF---GDKI--GKISAGLFTFVAMGTMIYALVTYHWRA 84
                689**************************8...5544..6999*********************97 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.29
      DUF202  53 ltllvglvr 61 
                 ++ll ++++
  CCD25309.1 107 FLLLAVVIN 115
                 233333332 PP

>> DUF5337  Family of unknown function (DUF5337)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.0   0.00014       1.2      44      62 ..      62      80 ..      31      91 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00014
     DUF5337 44 alLfdLaAlAaliwalvvt 62
                a Lf + A++ +i+alv  
  CCD25309.1 62 AGLFTFVAMGTMIYALVTY 80
                78**************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 999.15
//
Query:       CCD25310.1  [L=518]
Description: hypothetical protein NDAI_0E04930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.3e-185  616.0   0.1   3.8e-185  615.8   0.1    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  615.8   0.1  2.1e-189  3.8e-185       1     462 []      50     509 ..      50     509 .. 0.99

  Alignments for each domain:
  == domain 1  score: 615.8 bits;  conditional E-value: 2.1e-189
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH.HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafk.awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvl 97 
                 +v+s++ +t++vi+P+t++ i+ + +a ++dvd avaaAk+af+ +w++l++e Ra+ L k+adl+ee+ e la +e++++Gk+l+ +r++v+ + ++l
  CCD25310.1  50 FVKSKEgKTVDVIDPSTEKLITPIYEAFQDDVDIAVAAAKKAFHsNWSQLEPEARAKSLFKLADLIEENSELLASIESMDNGKSLTCSRGDVDLVSKYL 148
                 577777678***********************************88***************************************************** PP

                 HHHHHHHHHHSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCH CS
      Aldedh  98 ryyaelaeklegevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsev 196
                 r +a++a+kl+g+v+++ ++++a+++rePlGv+g+I+PWNfPll+++wk+ pala+GNtvvlKPae+tplsal   +l++eag+P+gv+n+++gsg+ v
  CCD25310.1 149 RSCAGWADKLNGNVINTGKDHFAYTTREPLGVCGQIIPWNFPLLMWSWKIGPALATGNTVVLKPAENTPLSALFASQLCKEAGIPNGVVNIIPGSGRIV 247
                 *****************88******************************************************************************** PP

                 HHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT CS
      Aldedh 197 gealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakk 295
                 ge l++hp+++k++ftGst++g +i+k+aa+++k+vtlElGGk+p+iv++daDldkav++i++g+f+n+G+vC+a+sr++vq+s+y+e+++k+++ +++
  CCD25310.1 248 GESLCKHPDIKKIAFTGSTRTGSHIMKTAADTIKKVTLELGGKSPNIVFADADLDKAVKDIAFGIFYNSGEVCCAGSRVYVQDSVYEEVLQKFKAYTET 346
                 *************************************************************************************************** PP

                 --BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHHHSSS CS
      Aldedh 296 lkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieiaNdte 394
                 lkvg+p+de++  G+++s++ql+k+ +yv+ +++ega++++Gg   e+  ++gyfv+Pt++a+v++dm+i++eEiFGP+++v kf++++e++++aNd++
  CCD25310.1 347 LKVGNPFDESNFQGAQTSKQQLSKILDYVKIGTKEGARVITGG---ERCGKNGYFVKPTIFADVKEDMKIVKEEIFGPIVTVSKFSTVDEVVSMANDSQ 442
                 *******************************************...7789************************************************* PP

                 EESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 395 yGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 yGLaag++tkd+++a  v++rl+aG+++iN++++++ +  pfgG++qSg+Gre+g+++l++yt+vk+v
  CCD25310.1 443 YGLAAGIHTKDVNKAIDVSNRLNAGTIWINTYNAFHQNV-PFGGFGQSGIGREMGAAALDNYTQVKSV 509
                 *************************************99.**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       609  (0.0339673); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3501.59
//
Query:       CCD25311.1  [L=193]
Description: hypothetical protein NDAI_0E04940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.23   10.3   0.0        0.3    9.9   0.0    1.1  1  EutA      Ethanolamine utilisation protein EutA


Domain annotation for each model (and alignments):
>> EutA  Ethanolamine utilisation protein EutA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   1.7e-05       0.3     223     272 ..      10      59 ..       4      67 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 1.7e-05
        EutA 223 maellvevvglkkeselaelllttkslkekkeievvtlsGGvadliyeee 272
                 +  llv++v +  + + a++ +t ++l+ +   ++v +sGG +d+i  ++
  CCD25311.1  10 INLLLVNAVSGGIKPKAAQKSMTYEKLTLRALESCVKFSGGLSDTIDVNT 59 
                 5668999999999*******************************997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       375  (0.0209158); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1499.12
//
Query:       CCD25312.1  [L=319]
Description: hypothetical protein NDAI_0E04950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        1.3    9.2   4.6        7.9    6.6   2.7    2.8  1  ETRAMP    Malarial early transcribed membrane protein (ETRAMP


Domain annotation for each model (and alignments):
>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.7   0.00044       7.9       9      33 ..       2     243 ..       1     291 [. 0.56

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00044
      ETRAMP   9 ffafLlavnlltpeslcdevnkkk........................................................................... 32 
                 +f fL++vn++++++     n++                                                                            
  CCD25312.1   2 LFQFLFIVNFFSVCLAGILPNNNVekdvtsslsvghfnfstvekfwgridmsnvqntkeghfmkillsinsnikagavgdsisaiqnnferllvlpsli 100
                 799999999999998765555444445667777777777777777777777666666666666666666666666666666666666666666666666 PP

      ETRAMP  33 ................................................................................................... 32 
                                                                                                                    
  CCD25312.1 101 aekdslvfnqlngsdilsikgelddivalgeqyqglidklswknklfinkafknailsyiqfhawkinmlnkyvlgsagtnsysniilhegetllksvk 199
                 666666666666666666666666666666555555555555555555555555555555555555555555555555555555555555555555555 PP

      ETRAMP  33 ...........................................e 33 
                                                            e
  CCD25312.1 200 ysllaaietievvsgnsvvamvdmaknhfrafnnetvligaikE 243
                 55555555555555555555555555555555555555555441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       937  (0.0522617); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2383.76
//
Query:       CCD25313.1  [L=1134]
Description: hypothetical protein NDAI_0E04960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-20   71.5   0.1    3.5e-19   69.1   0.0    2.3  2  HA2          Helicase associated domain (HA2)
    2.2e-15   56.9   0.1    6.1e-15   55.5   0.1    1.8  1  Helicase_C   Helicase conserved C-terminal domain
    3.2e-15   56.2   0.0    1.2e-14   54.4   0.0    2.0  1  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    2.9e-08   33.7   0.2    6.5e-08   32.5   0.2    1.6  1  DEAD         DEAD/DEAH box helicase
    8.4e-07   29.3   0.1      3e-06   27.5   0.1    2.0  1  AAA_22       AAA domain
    0.00019   21.8   0.1    0.00057   20.2   0.1    1.8  1  AAA_19       AAA domain
     0.0016   18.2   0.0     0.0029   17.4   0.0    1.3  1  AAA_30       AAA domain
     0.0019   17.5   0.0     0.0039   16.5   0.0    1.5  1  DUF2075      Uncharacterized conserved protein (DUF2075)
     0.0055   15.8   0.1      0.011   14.8   0.1    1.4  1  T2SSE        Type II/IV secretion system protein
     0.0068   16.9   0.0      0.025   15.1   0.0    2.1  1  ABC_tran     ABC transporter
     0.0082   15.8   0.0       0.02   14.5   0.0    1.7  1  SRP54        SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
      0.012   15.0   0.2      0.029   13.7   0.1    1.6  1  ATPase       KaiC
      0.018   15.0   3.5       0.27   11.2   0.6    3.6  2  AAA_14       AAA domain
      0.032   14.0   0.2        3.9    7.2   0.0    2.4  2  IstB_IS21    IstB-like ATP binding protein
      0.072   12.5   0.0       0.22   11.0   0.0    1.8  1  PhoH         PhoH-like protein
       0.16   11.9   0.0       0.29   11.1   0.0    1.4  1  Flavi_DEAD   Flavivirus DEAD domain
       0.18   11.8   9.2        2.1    8.3   0.0    3.8  4  ResIII       Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       7.9   8.3e+03      75      82 ..     401     408 ..     362     437 .. 0.45
   2 !   69.1   0.0   3.3e-22   3.5e-19       7     108 .]     838     920 ..     831     946 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 7.9
         HA2  75 eeeeeeka 82 
                 e+++e+++
  CCD25313.1 401 ESTSEKNN 408
                 11111111 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 3.3e-22
         HA2   7 algALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrklahkdaegDh 105
                   +A+d++g lT+lGr++a++Pl+p+l+k+Ll++   ++gc +e++tiv++lsv ++f +++e ++e++      +++kr+ +++           +Dh
  CCD25313.1 838 FNEAIDNKGVLTPLGRQIAKFPLQPSLSKILLIS--SQNGCSEEMVTIVSLLSVPQVFYRPKERQEESD------MARKRFFISE-----------SDH 917
                 558*******************************..667**********************98665443......4445554444...........777 PP

         HA2 106 ltl 108
                 ltl
  CCD25313.1 918 LTL 920
                 775 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   5.8e-18   6.1e-15      16     111 .]     638     770 ..     626     770 .. 0.80

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 5.8e-18
                 TSEEEEEESSHHHHHH......HHHH............HHHTTSTEEEESTTSTHHHHHHHHHHH.HTTSSSEEEESGGGTSSSTSTTESEEEESSSS. CS
  Helicase_C  16 ggkilifvntidrlek......vkll............lekkgikvavlhgelpqnereeileqf.nkgesdvLiatdvaerGidipkvnlVinfdlp. 94 
                  g+ilif++ ++++e        kll             e ++i+++ +++ lp+n +++i++++ n+++++++iat++ae++++i+++++Vi++++  
  CCD25313.1 638 SGDILIFMTGQEDIETaadsvkEKLLnvymkkygistfDEINDIEILQIYSALPANIQNKIFQKYlNENKRKIVIATNIAETSLTIDGIRYVIDCGYSk 736
                 6789999999997755545554333344444444333355559*********************95688888**************************7 PP

                 ...SSH..............HHHHHHHTTSSSTT CS
  Helicase_C  95 ...rnv..............tsyiqriGRtgRag 111
                    +n+              t++iqr+GR+gR g
  CCD25313.1 737 lkvYNPkigldsltitpialTNAIQRSGRAGRTG 770
                 6664448899999999****************86 PP

>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   1.1e-17   1.2e-14       1      78 [.     978    1052 ..     978    1056 .. 0.92

  Alignments for each domain:
  == domain 1  score: 54.4 bits;  conditional E-value: 1.1e-17
                   HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHH CS
  OB_NTP_bind    1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLll 78  
                   +r++++ G+ +q a k     +y ++rt+  v++hp+S+l        p++vvy+el+ ttk y++ +t +dp wL+ 
   CCD25313.1  978 IRKCICYGFSQQAA-KISGLGKYVHLRTGMDVHLHPTSALYG--LGDLPSYVVYHELLMTTKEYICCVTSVDPFWLMD 1052
                   89************.6666666*******************7..5589****************************85 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.2   6.1e-11   6.5e-08       8     172 ..     437     587 ..     430     591 .. 0.78

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 6.1e-11
                 HHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS.TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   8 iplilgggdvlvaaeTGsGKTlaflipvlqivyet.kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtp 105
                 + +i +++ +++ +eTGsGKT+       q +ye+   ++g+++ +  P r  a  +++++ + ++ ++l ++  +g  + r + ++  +g++i ++t 
  CCD25313.1 437 LRTIRENQVIVIIGETGSGKTTQL----AQYIYEDgFCNNGKMIGCTQPRRVAAMSVAKRVATEMD-VKLGEE--VG-YSIRFEDQTS-SGTKIKFMTD 526
                 56778899999**********985....5555565578999999*****************99999.444444..44.4455555555.77******** PP

                 HHHHH.HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HH CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD 106 grldd.llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kd 172
                 g l++  l +++  l++ +++++DEa++ + +   d +  ++++l +   d  l+  +i+ SAT++ ++
  CCD25313.1 527 GILLReTLLDNS--LDKYSCIIIDEAHERSLN--TDVLLGLFKTLLTERRD--LK--LIITSATMNaQK 587
                 ****95446666..*************99887..89999999999444444..44..********9665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   2.9e-09     3e-06       4     127 ..     442     578 ..     438     587 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 2.9e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaee..erpevvfvtlpsstsskdllrellralglelka..................erlsseell.ea 81 
                 + +++v++Ge+G+GKTt l+++ +++          ++ + + +t p      +++++++ +++++l +                  +  +   ll e+
  CCD25313.1 442 ENQVIVIIGETGSGKTTQLAQYIYED-------GfcNNGKMIGCTQPRRVAAMSVAKRVATEMDVKLGEevgysirfedqtssgtkiKFMTDGILLrET 533
                 6789********************98.......334455555666666668888888888888888888888899999888888887555556666688 PP

      AAA_22  82 leqalraravielliiDEaqhlr..seealeeLrsllnlsrkgvqliL 127
                 l +++ +++   ++iiDEa+  +  ++ +l  +++ll  +r +++li+
  CCD25313.1 534 LLDNSLDKYS--CIIIDEAHERSlnTDVLLGLFKTLLT-ERRDLKLII 578
                 8888888888..********953324666666666666.577777776 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   5.4e-07   0.00057       9     132 ..     442     574 ..     436     578 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 5.4e-07
      AAA_19   9 kekvllvtaGpGtGKTrvlkhival......lvelggvkpeeillvaftgrAakelrerlaalgae........atTiHrlalldfddlltealellee 93 
                 +++v+++++  G+GKT+ l + + +       + +g  +p++++++++++r a e+  +l   g+e         +T  +   ++f +       ll+e
  CCD25313.1 442 ENQVIVIIGETGSGKTTQLAQYIYEdgfcnnGKMIGCTQPRRVAAMSVAKRVATEMDVKL---GEEvgysirfeDQTSSGT-KIKFMT----DGILLRE 532
                 7899***************98876511100034444455688888888888888888888...444555555554444433.122222....2235557 PP

      AAA_19  94 aeeekklqeee.llivDEfqd..vd.elqyrLlkallgekkkl 132
                 +  ++ l +++ ++i+DE+ +  ++ ++   L+k+ll+e+ +l
  CCD25313.1 533 TLLDNSL-DKYsCIIIDEAHErsLNtDVLLGLFKTLLTERRDL 574
                 7888999.6666******9872245567778888888766544 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.7e-06    0.0029      17      98 ..     442     551 ..     431     577 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.7e-06
      AAA_30  17 gdrvavltGpAGtGKttalkal..reaweaag........grviglAptgkaAkvLa................eelgieastiakllkrlk........ 81 
                 +++v v+ G  G+GKtt l+++  ++ + ++g        +rv++++  +++A ++                 +                         
  CCD25313.1 442 ENQVIVIIGETGSGKTTQLAQYiyEDGFCNNGkmigctqpRRVAAMSVAKRVATEMDvklgeevgysirfedqT----------------Ssgtkikfm 524
                 4459**************99885555666666899999999999999999999999944443333333322220................233333344 PP

      AAA_30  82 ...........grarlepgtllivDEag 98 
                            + ++l++ +++i+DEa 
  CCD25313.1 525 tdgillretllD-NSLDKYSCIIIDEAH 551
                 445666666664.689999*******96 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.7e-06    0.0039       2      98 ..     444     551 ..     443     567 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.7e-06
     DUF2075   2 avvlVtGvaGtGKtvvllnllael........eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsef...kkaeekkeepke 89 
                 +v+++ G++G+GKt  l + ++e             + r+++ +sv ++    +  +l ++   + + e+ + + + i+ ++ +   ++   +++ +k 
  CCD25313.1 444 QVIVIIGETGSGKTTQLAQYIYEDgfcnngkmIGCTQPRRVAAMSVAKRVATEMDVKLGEEVGYSIRFEDQTSSGTKIKFMTDGillRETLLDNSLDKY 542
                 79*********************999877766666699999999**99999999999988884444445555666667777777899999********* PP

     DUF2075  90 dvvivDEAh 98 
                  ++i+DEAh
  CCD25313.1 543 SCIIIDEAH 551
                 ********* PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.1e-05     0.011     115     148 ..     417     462 ..     347     468 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
       T2SSE 115 k.............ekiaevlrkavrerglilvsGgTgsGKttllya 148
                 k             ++ +++lr+  re+++i++ G TgsGKtt l  
  CCD25313.1 417 KedvkatrrslpiyKTRSDLLRTI-RENQVIVIIGETGSGKTTQLAQ 462
                 044445555556645556667665.999***************9954 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.4e-05     0.025       7      41 ..     439     474 ..     434     550 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.4e-05
                 EEETTSEEEEEESTTSSHHH.HHHHHTTSS--SEEE CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
    ABC_tran   7 klkegekvaivGenGaGKSt.LlkllagllkpteGe 41 
                 +++e+++++i+Ge+G+GK+t L++ +++    ++G+
  CCD25313.1 439 TIRENQVIVIIGETGSGKTTqLAQYIYEDGFCNNGK 474
                 7899***************94555666655555555 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.9e-05      0.02       2      61 ..     444     503 ..     443     594 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.9e-05
                 EEEEEEESTTSSHHHHHHHHHHHHHHT...TS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEE CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkke...gkkvllvaaDtfRaaAveQLktlaeklgvpvik 61 
                 +vi+++G +G+GKTt la+       +   ++  ++ ++   R+aA+   k +a++++v++ +
  CCD25313.1 444 QVIVIIGETGSGKTTQLAQYIYE---DgfcNNGKMIGCTQPRRVAAMSVAKRVATEMDVKLGE 503
                 699************87765544...335588999**********************999765 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   2.8e-05     0.029      16      43 ..     440     467 ..     429     522 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
      ATPase  16 ipegrvvlitGepGtGKtifalqFlikg 43 
                 i e++v+ i Ge+G+GKt+  +q++++ 
  CCD25313.1 440 IRENQVIVIIGETGSGKTTQLAQYIYED 467
                 8899**********************86 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6   0.00026      0.27       2      99 ..     443     580 ..     442     592 .. 0.65
   2 ?    0.0   0.1      0.76   8.1e+02      42      77 ..     650     682 ..     627     732 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
      AAA_14   2 rkilvitGaRrvGKTtllkqlikell..........vkkesilyinldderd...................kkladpe........kllelileklke. 62 
                 ++++vi G   +GKTt l q+i+e            ++++++  +++ +                      +     +                   + 
  CCD25313.1 443 NQVIVIIGETGSGKTTQLAQYIYEDGfcnngkmigcTQPRRVAAMSVAKRVAtemdvklgeevgysirfedQ-----TssgtkikfM----------Td 526
                 789*******************99988888888888777777777776655455555666556654443320.....1223223221..........02 PP

      AAA_14  63 .............ekktylflDEiqevpewekalkslvd....egknldvivtG 99 
                              +k +++++DE++e +   ++l +l++    e+++l++i+t 
  CCD25313.1 527 gillretlldnslDKYSCIIIDEAHERSLNTDVLLGLFKtlltERRDLKLIITS 580
                 222233344456778889999999998777776666665444466778888875 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.76
      AAA_14  42 rdkklad..pekllelileklkeekktylflDEiqevp 77 
                 + +++ad  +ekll+++++k       +  +DEi  ++
  CCD25313.1 650 DIETAADsvKEKLLNVYMKK-----YGISTFDEINDIE 682
                 44333330023444444444.....3457788888773 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0037       3.9      42      66 ..     438     463 ..     403     494 .. 0.73
   2 ?    4.4   0.0     0.026        27     104     160 ..     537     594 ..     492     599 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0037
   IstB_IS21  42 sfiekkenivllGpsGvGKs.hlaia 66 
                   i++++ iv++G +G GK+  la  
  CCD25313.1 438 RTIRENQVIVIIGETGSGKTtQLAQY 463
                 55899**************7246655 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.026
   IstB_IS21 104 krllkvdllilDdlgllpldqaeaellfe.viekryerrsiiitsnlpfaewdevlgd 160
                 ++l k + +i+D+     l+ +    lf+ ++ +r + + ii ++ ++ +++++++g+
  CCD25313.1 537 NSLDKYSCIIIDEAHERSLNTDVLLGLFKtLLTERRDLKLIITSATMNAQKFSNFFGN 594
                 5788999*********************846778888888888888899999999987 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021      0.22      10      34 ..     434     458 ..     428     464 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00021
                 HHHHHHHHH-SEEEEE--TTSSTTH CS
        PhoH  10 keylealkkndivfaiGpaGtGKty 34 
                 +++l+++++n+++++iG++G+GKt 
  CCD25313.1 434 SDLLRTIRENQVIVIIGETGSGKTT 458
                 567899*****************95 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00028      0.29       5     120 ..     444     566 ..     440     590 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00028
                 -EEEEE--TTS-TTTTHHHHHHHHHHHTT--EE.EEESSHHHHHHHHHHT.TTS-EEE----.....---------SEEEEEHHHHHHHHHHT------ CS
  Flavi_DEAD   5 kltvldlhPGaGktrkvlpelvkeaierrlrtl.vLaPtrvvlaemeeal.kglevryktsa.....vkeektgrelvdvmchatftkrllspvrkkny 96 
                 ++ v+    G+Gkt ++   + ++ + ++ + +    P rv +  +++ + ++++v+  +++     ++++++++  + +m    + + +l +    +y
  CCD25313.1 444 QVIVIIGETGSGKTTQLAQYIYEDGFCNNGKMIgCTQPRRVAAMSVAKRVaTEMDVKLGEEVgysirFEDQTSSGTKIKFMTDGILLRETLLDNSLDKY 542
                 566666677888888887777777766666555244577776555554331345555544321111145777788889********************* PP

                 SEEEEETTT--SHHHHHHHHHHHH CS
  Flavi_DEAD  97 eliimDeahflDPasiaarGylet 120
                   ii+Deah    +     G  +t
  CCD25313.1 543 SCIIIDEAHERSLNTDVLLGLFKT 566
                 *********766555555555555 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.1   1.1e+03      60     118 ..     265     321 ..     260     379 .. 0.78
   2 ?    8.3   0.0     0.002       2.1      17      46 ..     414     465 ..     399     467 .. 0.73
   3 ?    7.0   0.0    0.0052       5.4     116     145 ..     531     554 ..     488     585 .. 0.71
   4 ?   -3.6   1.1       8.9   9.4e+03      84     124 ..    1080    1122 ..    1063    1132 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.1
                 EESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH CS
      ResIII  60 lvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldads 118
                 l+++++  ++t ++f++ +s++++    +++  + ++ e++++   +++ +++ ++++s
  CCD25313.1 265 LIHELNFSKKTSDNFASRTSNQDT-LHSEIQLYSLSI-EQRKNWLPFFLKNYSNIHNIS 321
                 678888899999999999999976.555555555555.556777778888888888877 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.002
                 ............................TTSEEEEEESTTSTHHHHHHHHHH CS
      ResIII  17 eklks......................krdkrglikmaTGtGKTlvaaklie 46 
                 e++k+                      ++++ ++i  +TG+GKT  +a+ i+
  CCD25313.1 414 EEIKEdvkatrrslpiyktrsdllrtiRENQVIVIIGETGSGKTTQLAQYIY 465
                 3333344447777777777777888867778888**********99999887 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0052
                 HTH........HHHTTT-SEEEEETGGGTT CS
      ResIII 116 adseeeeeeseellrdrfdviiiDEaHrlg 145
                 ++      +  +++ d++ +iiiDEaH  +
  CCD25313.1 531 RE------TLLDNSLDKYSCIIIDEAHERS 554
                 33......36777889999********855 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 8.9
                  ..GEEEESSS-B--.......-SEEEEEHHHHHHTH....... CS
      ResIII   84 e.igkkvsgdkkkakekdstnkkilvttiqsldadseee.eee 124 
                  e +++++++d + + e+  +++++++ + +s++++ + e + +
  CCD25313.1 1080 EdEETEIKDDLDFKVENCLNKRNLFLKNLESFNKNAKVEdTAM 1122
                  2356667777766677888889999999999998885444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.45
# Mc/sec: 7600.54
//
Query:       CCD25314.1  [L=354]
Description: hypothetical protein NDAI_0E04970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-32  110.6   0.0    1.9e-31  109.4   0.0    1.5  1  Peptidase_M48  Peptidase family M48


Domain annotation for each model (and alignments):
>> Peptidase_M48  Peptidase family M48
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.0   1.1e-35   1.9e-31      14     195 ..     142     311 ..     130     312 .. 0.89

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 1.1e-35
                    HHHHTT-..-EEEEEEE-GGGT..-EEEEESSS-EEEEEEHHHH-SSB-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTT-SHH CS
                    xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48  14 lakeaglpkpltkvyvvnspkr..NAFalgggknkrivltdgLlkqllseeelaaVlGHElGHikhrhsvvslivsllasillllglallisraee 107
                     +++++l+  ++kv +vn+p++  NAF+l+gg   ++++++++l+ + +++ la+Vl+HE +H  +rh+ ++l+ + + si+ l+++++++  + +
     CCD25314.1 142 TVDRSQLDGIKWKVHIVNDPRAppNAFVLPGG---KVFVFSSILNICQNDDGLATVLSHEFAHQLARHTSENLSKAPIYSIIGLVLYLVTGVENIN 234
                    56677777789*********999*********...*********99************************************99999855544333 PP

                    HHHTT--S---HHHHHHHHHHTTHHHHHHHHHHHHHHHHTTT.HHHHHHHHHHHHHHTT--S---HHHH..HHS-SS--HHHHHHHHHH- CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
  Peptidase_M48 108 daagafldalavliglliillflalSRkrEyqADeagvellkrakdlvraliklakdlerqdvsaslrs..ellstHPplleRiqalkel 195
                    +              ll  ll ++ SR++E++AD +g+ ++++a+  +++ +kl+++++ ++++    +  e+lstHP + +Riq+++e+
     CCD25314.1 235 RL-------------LLDSLLRMPASRQMETEADYIGLMIMAKACFHPEESVKLWQRMSAFEKQIGGSRslEFLSTHPASDRRIQNISEW 311
                    32.............344456669************************************99988777778****************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       408  (0.0227564); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2572.15
//
Query:       CCD25315.1  [L=338]
Description: hypothetical protein NDAI_0E04980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-16   59.3   5.4    4.8e-16   59.3   5.4    2.5  3  SNARE_assoc  SNARE associated Golgi protein
     0.0022   18.3   5.4     0.0022   18.3   5.4    2.1  2  TctB         Tripartite tricarboxylate transporter TctB famil
  ------ inclusion threshold ------
      0.037   13.9   0.5      0.058   13.3   0.5    1.3  1  GP41         Retroviral envelope protein
       0.14   11.8   5.0        1.2    8.7   1.0    2.5  2  Tetraspanin  Tetraspanin family
       0.65    9.8   4.0       0.15   11.9   1.0    1.5  2  VIT1         VIT family
        1.6    8.0   7.7       0.14   11.5   1.0    2.0  2  DUF3810      Protein of unknown function (DUF3810)
        3.4    8.2   5.9        1.5    9.4   0.1    2.7  2  DUF4231      Protein of unknown function (DUF4231)
        6.1    7.1   8.9       0.83    9.8   0.9    2.6  2  MPS-4        MinK-related peptide, potassium channel accessor
        6.9    6.8   8.3         24    5.0   0.2    3.4  3  DUF997       Protein of unknown function (DUF997)


Domain annotation for each model (and alignments):
>> SNARE_assoc  SNARE associated Golgi protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.1   4.3e+03      59      83 ..     118     142 ..     102     150 .. 0.53
   2 !   59.3   5.4   2.4e-19   4.8e-16       3     119 ..     146     263 ..     140     264 .. 0.93
   3 ?    0.2   0.0       0.5     1e+03      20      45 ..     284     301 ..     275     330 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2.1
  SNARE_assoc  59 lerlverygf.lallllrllpivPrd 83 
                  +++l+e++ +  +llll ++  +  +
   CCD25315.1 118 SNELSEKKSTqPILLLLLFIVAF-PP 142
                  55566554442333333333333.33 PP

  == domain 2  score: 59.3 bits;  conditional E-value: 2.4e-19
  SNARE_assoc   3 sevllvaaGvlfglll.gtlvtslgallGaslayllgrylgrkalrrkllsekrvkalerlverygf.lallllrllpivPrdlvn.yvaGltrvsfk 97 
                  +++l++a+G+l+g+   g++++s g+++G++ ++ + + ++++++++ +  ++r++al++ ++++ + ++l llrl+p+ P++++n ++aG+ ++s++
   CCD25315.1 146 YSFLSTATGLLYGVTFhGWILLSFGTVCGSVASFTAFKTILHSRAEKLVHANRRFEALASILQENESyWMLSLLRLCPF-PYSFTNgAIAGIYGISIR 242
                  56788*******98777****************************************999998877669*********6.8***************** PP

  SNARE_assoc  98 rFflatfiGsipwalvyaylGs 119
                  +F++a++i + p++l+y+++Gs
   CCD25315.1 243 NFTIANLI-TTPKVLIYLFIGS 263
                  ********.89*********97 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.5
  SNARE_assoc  20 tlvtslgallGaslayllgrylgrka 45 
                  +++t+l  +l a+l y+        +
   CCD25315.1 284 IVITMLVFMLTAWLLYY--------K 301
                  44555555555555554........3 PP

>> TctB  Tripartite tricarboxylate transporter TctB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   5.4   1.1e-06    0.0022      31     131 ..      81     187 ..      54     189 .. 0.65
   2 ?    2.0   0.1      0.12   2.4e+02     108     125 ..     281     298 ..     231     314 .. 0.60

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.1e-06
        TctB  31 fPlllgvllallgllllv.............aadgekeekearedwrkllklvlallaalllyalllepl.Gf.ilata..lflllllgreerkwlkal 112
                 +Pl+  ++l++lg++ l+             +    k  + + e  +k+ ++ ++   +lll++++++pl G+ +l+ta  l+  +++ ++   w+++ 
  CCD25315.1  81 LPLWQRIILVILGIIQLIlmilllvfhnkilN----KLVDVSNELSEKKSTQPIL---LLLLFIVAFPPLiGYsFLSTAtgLLYGVTF-HG---WILLS 168
                 57665555555554443344478889*75431....4444444444444445555...566666666654487566666566664444.44...99999 PP

        TctB 113 ilavvlallvyllFtklLg 131
                 + +v+ +++++ +F+++L+
  CCD25315.1 169 FGTVCGSVASFTAFKTILH 187
                 999999999******9997 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.12
        TctB 108 wlkalilavvlallvyll 125
                 +l ++i+ +v+ l  +ll
  CCD25315.1 281 FLSIVITMLVFMLTAWLL 298
                 233333333333333333 PP

>> GP41  Retroviral envelope protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.5   2.9e-05     0.058     109     173 ..      47     106 ..      17     132 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHH..HHHHHHHHHCHHHHHHHHHHHXXXXX CS
        GP41 109 lhnliediqnqqektldeldkldklaqslanwfkllnslWvkyivvilvglrivlivlsllPvvf 173
                 l n  +d+  q      ++ +l+k a +l n f +l  lW++  + ++  l i+ ++l++l +vf
  CCD25315.1  47 LDNDFLDVY-QMTPRQRIILNLKKSAYNLLNRFYSLP-LWQRI-ILVI--LGIIQLILMILLLVF 106
                 555555553.3344456788999999**********8.****4.4333..333334444443344 PP

>> Tetraspanin  Tetraspanin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.0   0.00063       1.2      84     131 ..      87     125 ..      73     147 .. 0.80
   2 ?    4.2   0.0     0.016        31       7      37 ..     278     311 ..     274     332 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00063
                  XXXXXXXXXXXXXXXXXX--HHH........HHHHHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Tetraspanin  84 llllvlfllelaagilgfvfsdkargkvseiinnaievkyrddldlkk 131
                  ++l++l +++l+++il++vf++k        i n++ v++ + l+ kk
   CCD25315.1  87 IILVILGIIQLILMILLLVFHNK--------ILNKL-VDVSNELSEKK 125
                  7999*******************........55555.45555555544 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.016
                  XXXXXXXXXXXXXXXXXXXXXX...XXX...... CS
                  xxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxx RF
  Tetraspanin   7 ffnllfwligivllavGvwlrl...khaeaalac 37 
                  +f +l ++i ++++++  wl++   k+ + +l++
   CCD25315.1 278 LFDFLSIVITMLVFMLTAWLLYyktKKRYLELRN 311
                  5777888888888888878777655333333333 PP

>> VIT1  VIT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.0   7.8e-05      0.15     142     193 ..     132     182 ..      65     207 .. 0.85
   2 ?   -4.0   0.1       5.6   1.1e+04     168     181 ..     282     295 ..     275     304 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 7.8e-05
        VIT1 142 alsfliGgliPllpylfvesvglalvvsiavtllalllfGavkalltgsskl 193
                  l+ +i ++ Pl+ y f++   ++l++ +++ + +ll fG v + + +   +
  CCD25315.1 132 LLLLFIVAFPPLIGYSFLS-TATGLLYGVTFHGWILLSFGTVCGSVASFTAF 182
                 5677899**********99.889999999************98887754443 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 5.6
        VIT1 168 vsiavtllalllfG 181
                 +si++t+l+ +l+ 
  CCD25315.1 282 LSIVITMLVFMLTA 295
                 56667777666665 PP

>> DUF3810  Protein of unknown function (DUF3810)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.9      0.21   4.2e+02      31      81 ..      92     156 ..      69     207 .. 0.60
   2 ?   11.5   1.0   6.8e-05      0.14      12      98 ..     229     316 ..     224     332 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.21
     DUF3810  31 llillvilylvlai..............klkkrkkkkkrllkvllrvllvllvvyflftllwgln 81 
                 l i+ +il+++l +               l ++k+ +  ll +l  v++  l+ y +   + gl+
  CCD25315.1  92 LGIIQLILMILLLVfhnkilnklvdvsnELSEKKSTQPILLLLLFIVAFPPLIGYSFLSTATGLL 156
                 33333333333333444555555554432222222222222233333333344444444444444 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.8e-05
     DUF3810  12 ilsrlsglfpFSvgellivllillvilylvlai..klkkrkkkkkrllkvllrvllvllvvyflftllwglnYyreplserlglkkeey 98 
                 + +++ g+  +S+  ++i+ li    ++++l+i  ++k+ +++  +  + l  +l ++++++++++ +w l Y++++ + +l     ++
  CCD25315.1 229 TNGAIAGIYGISIRNFTIANLITTPKVLIYLFIgsRIKSMGES-DSTSSRLFDFLSIVITMLVFMLTAWLLYYKTKKRYLELRNFDGQH 316
                 5678999999********9999998888888888666655555.66666788899999999999999***9999998777665444444 PP

>> DUF4231  Protein of unknown function (DUF4231)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   2.0      0.75   1.5e+03      25      67 ..      86     106 ..      63     204 .. 0.65
   2 ?    9.4   0.1   0.00074       1.5      30      78 ..     257     311 ..     232     315 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.75
     DUF4231  25 ivlgallpilvssklgagvsvlkiltallsalvailaaleeff 67 
                  ++ ++l i+                        il +l  +f
  CCD25315.1  86 RIILVILGII----------------------QLILMILLLVF 106
                 3333333333......................22222222222 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00074
     DUF4231  30 llpilvs......sklgagvsvlkiltallsalvailaaleeffrykerWrryRs 78 
                 +  ++ s      + + ++++++ +l+ ++  lv +l+a+   ++ k+r+ + R+
  CCD25315.1 257 IYLFIGSriksmgESDSTSSRLFDFLSIVITMLVFMLTAWLLYYKTKKRYLELRN 311
                 44444446666665678999********************************998 PP

>> MPS-4  MinK-related peptide, potassium channel accessory sub-unit protein 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.6      0.31   6.2e+02      43      69 ..      85     112 ..      66     118 .. 0.62
   2 ?    9.8   0.9   0.00042      0.83      33      62 ..     270     299 ..     241     303 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.31
       MPS-4  43 dfllvviisvvslgl.vylllwievlln 69 
                 + +++vi+ ++ l l + ll++ + +ln
  CCD25315.1  85 QRIILVILGIIQLILmILLLVFHNKILN 112
                 4455666666666541444555555555 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00042
       MPS-4  33 nrisystkyfdfllvviisvvslglvylll 62 
                 +  s s++ fdfl +vi  +v++   +ll 
  CCD25315.1 270 ESDSTSSRLFDFLSIVITMLVFMLTAWLLY 299
                 55588999*****99988888887777775 PP

>> DUF997  Protein of unknown function (DUF997)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.012        24      36      63 ..      77     104 ..      65     113 .. 0.66
   2 ?    0.9   0.3      0.23   4.5e+02       8      28 ..     152     172 ..     150     184 .. 0.80
   3 ?    3.7   0.2     0.032        63      45      62 ..     281     298 ..     278     308 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.012
      DUF997  36 yilglPlWfflscillpilfivlvillv 63 
                  +  lPlW  +  ++l i+ ++l+ill+
  CCD25315.1  77 RFYSLPLWQRIILVILGIIQLILMILLL 104
                 67899***87766666666665555554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.23
      DUF997   8 ltllltllyflwwllfaYglg 28 
                 +t ll+ ++f  w+l+ +g+ 
  CCD25315.1 152 ATGLLYGVTFHGWILLSFGTV 172
                 67889999*********9976 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.032
      DUF997  45 flscillpilfivlvill 62 
                 fls+++++++f++ ++ll
  CCD25315.1 281 FLSIVITMLVFMLTAWLL 298
                 688999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1334  (0.0744046); expected 358.6 (0.02)
Passed bias filter:                      638  (0.0355848); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2370.09
//
Query:       CCD25316.1  [L=1058]
Description: hypothetical protein NDAI_0E04990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-30  105.2   5.5    2.1e-30  105.2   5.5    2.1  2  DUF3336   Domain of unknown function (DUF3336)
      1e-25   91.1   0.1    5.5e-25   88.7   0.0    2.3  2  Patatin   Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> DUF3336  Domain of unknown function (DUF3336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3      0.51   4.5e+03     100     118 ..      21      39 ..      10      58 .. 0.69
   2 !  105.2   5.5   2.4e-34   2.1e-30      14     137 ..     139     264 ..     131     265 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.51
     DUF3336 100 TKklieeYidevekalell 118
                 T ++ie Y++e  +  +  
  CCD25316.1  21 TQHIIETYYQEQDQDQDQG 39 
                 8999999999988765555 PP

  == domain 2  score: 105.2 bits;  conditional E-value: 2.4e-34
     DUF3336  14 klrkattYeeWkeaAkeLDellgndeWkendes.yYdyklvkkvlkkLrklrekedlkellellrtclkrNfagienprLYsetyiGTKklieeYidev 111
                 + ++at+Y +Wk+++ +LD+l++++eWke++es +Yd+kl+++ + +++  r ++++++ll+l+r +++rN+++i n +LY++++iGTK li+eY++e 
  CCD25316.1 139 EKQTATSYSDWKNTCLKLDDLTNKNEWKETKEStLYDFKLIENLTTDMKLNRLSKNYSQLLYLIRINWVRNIGNIGNVNLYRHSHIGTKYLIDEYLKES 237
                 56899********************************************************************************************** PP

     DUF3336 112 ekalellaetkq.lsaeekleffketr 137
                   +le+l+e++  l+ ++ l ++++tr
  CCD25316.1 238 RLSLETLLESDCdLEDDYLLGILQQTR 264
                 ********9954488899999999887 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   6.1e-29   5.5e-25       1     200 [.     272     469 ..     272     472 .. 0.86
   2 ?   -1.9   0.1      0.35   3.1e+03     128     150 ..     963     985 ..     816    1033 .. 0.60

  Alignments for each domain:
  == domain 1  score: 88.7 bits;  conditional E-value: 6.1e-29
     Patatin   1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpaalvddlrnlllnkifdrdl..lirelaanlaarlsgllgkgglfdaea 97 
                 LvlsGGG+ g+f++g+l+ L  el   +++isG+SaGAi+a++l++   ++++  dl n   +  f+ ++     +++ nl    s+++ +g+ f+  +
  CCD25316.1 272 LVLSGGGTFGLFHIGVLTTL-FELDLLPRVISGSSAGAIVASILTTH--HKEEIPDLLNHVVENEFNIFQddKRKSESENLLIKISRFFKNGTWFNNQH 367
                 8******************9.9*******************999999..777777777777777777777767888999******************** PP

     Patatin  98 lrellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglfppvsldge......... 187
                 l +++  +l+d+t++++  r gk+                  + +++ ++ +    l++  ++++v +++av+aS+++Pg+fp   l+ +         
  CCD25316.1 368 LINTMIDFLGDLTFREAYNRTGKI-----------------LNITVSPASLFEQPRLLNSLTAPNVLIWSAVCASCSLPGIFPSSPLYEKdlktgekke 449
                 ************************.................566666666666777777788899*****************77777444444555667 PP

     Patatin 188 .......lyvDGGilsNvPi 200
                        ++vDG++ + +Pi
  CCD25316.1 450 wsgsssvKFVDGSVDNDLPI 469
                 777779999****9999998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.35
     Patatin 128 ftanqavpaittataatastanr 150
                 ++ ++++ ++   +++ ++ +n 
  CCD25316.1 963 VKHSFENNNNNITNNNNNNNNNK 985
                 33333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1058 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2221  (0.123878); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 6835.87
//
Query:       CCD25317.1  [L=886]
Description: hypothetical protein NDAI_0E05000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-14   53.2  26.1    2.8e-09   37.1   9.1    2.5  2  LIM       LIM domain


Domain annotation for each model (and alignments):
>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   9.1   1.6e-13   2.8e-09       1      57 [.     722     782 ..     722     783 .. 0.90
   2 !   21.6   9.0     1e-08   0.00019       1      53 [.     787     838 ..     787     842 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 1.6e-13
                 -TTT--BE-TTTEEEEETTE...EEETTTSB-TTT-SB-CTT..CEEETTEEEEHHHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldk...vwHeeCFtCsdCqkeLkegs.fyekdgklyCkkdylkk 57 
                 C  C+ +i+ ++++ k  ++   +wH+eCF+C++C+ +++++  +y+ ++++yC+++++++
  CCD25317.1 722 CRTCGLEITGKKIFSKNDNElsgQWHRECFQCTNCKIKFNKRIpCYILNDTPYCQQHFHEE 782
                 999******999998777764447**********************************875 PP

  == domain 2  score: 21.6 bits;  conditional E-value: 1e-08
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT.CEEETTEEEEHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegsfyekdgklyCkkd 53 
                 C+ C++ i+ ++l  + + +++H++C++C+ C+k++ +++++  d+ ++C ++
  CCD25317.1 787 CKICSNFIEGKCLE-NDKLERFHVDCLNCFICHKQILDEYYIFNDHVPLCADH 838
                 999******99999.688889******************9999999****876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (886 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2630  (0.14669); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.51
# Mc/sec: 5271.54
//
Query:       CCD25318.1  [L=381]
Description: hypothetical protein NDAI_0E05010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-23   82.7   2.6    2.5e-23   82.7   2.6    2.8  3  SRP40_C     SRP40, C-terminal domain


Domain annotation for each model (and alignments):
>> SRP40_C  SRP40, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.3      0.17   3.1e+03      52      59 ..      16      23 ..      14      42 .. 0.66
   2 ?   -3.9   0.3         1   1.8e+04      52      56 ..      65      69 ..      63      84 .. 0.52
   3 !   82.7   2.6   1.4e-27   2.5e-23       1      76 []     309     379 ..     309     379 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.17
     SRP40_C 52 eKnKkKrg 59
                eK+KkK  
  CCD25318.1 16 EKEKKKEA 23
                89999974 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1
     SRP40_C 52 eKnKk 56
                eK+Kk
  CCD25318.1 65 EKTKK 69
                45544 PP

  == domain 3  score: 82.7 bits;  conditional E-value: 1.4e-27
     SRP40_C   1 pFrRvdeeevvevadkrladnsyeakkgaeddyGekanedLiktrGkgFrkeKnKkKrgsyrggeIdtesvnSikF 76 
                 +F+R+++e+ + ++  +l dn+y++   a++++Ge ane+L ++rGk+F+k+KnK+Krgsyrgg+I+++s  S+kF
  CCD25318.1 309 HFSRIEREK-IAFEAWELTDNTYKG---AAGTWGEMANEKLGRVRGKDFTKNKNKMKRGSYRGGSITMAS-GSYKF 379
                 6****6555.666777*******96...689*************************************77.****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2283  (0.127336); expected 358.6 (0.02)
Passed bias filter:                      818  (0.0456244); expected 358.6 (0.02)
Passed Vit filter:                       636  (0.0354733); expected 17.9 (0.001)
Passed Fwd filter:                       233  (0.0129957); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 4.02u 0.45s 00:00:04.47 Elapsed: 00:00:00.90
# Mc/sec: 1278.92
//
Query:       CCD25319.1  [L=619]
Description: hypothetical protein NDAI_0E05020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   7.6e-102  341.1  13.3   3.8e-101  338.8  13.3    1.8  1  PTR2      POT family
    8.6e-10   38.1  34.1    1.8e-08   33.7  26.1    2.8  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> PTR2  POT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.8  13.3  4.2e-105  3.8e-101       1     387 [.     167     541 ..     167     548 .. 0.94

  Alignments for each domain:
  == domain 1  score: 338.8 bits;  conditional E-value: 4.2e-105
                 CHHHHHHHHHHHHHHHHCCCCTTTTSS--S--.TCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT-SSSSCHHHH................HHHHHHH CS
        PTR2   1 fktIllgsiiyaiGhvvlalsaipslksaesa.gvrvallfigLalIalGtGgiKpnvSafgadqfeekdprersr................fFsiFyf 82 
                 ++ I +g+ +y++G+++l+++aips+ s++ + g     ++++++lI++GtG iK+n+S ++adq+++++pr +                  +F++Fy+
  CCD25319.1 167 YNSISVGTGFYIVGIFILFITAIPSIASQNASlG----GFIVSIILIGIGTGFIKANLSVLIADQLPKRKPRVKILksgerviedpnitlqnVFMVFYL 261
                 5779999******************998876674....7**********************************999999******************** PP

                 HHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHCTTTS-EE------SHHHHCCCHSHHHHHCCCHHHHHHHHHHHHHSHHHHHH---HHC CS
        PTR2  83 siNvGSLlsliitpylqenvgyplgFgipavlmiiallvFllGsrlykkkppkgnvltkvfkvllvaaknkvkkirssagkkklhwldkakeldkalsi 181
                 +iN+GS+ s+++t+ l++++g++ ++++p+++++ia++++++G++ y k + ++nv++k+fkv++++aknk++ + ++      h +  +         
  CCD25319.1 262 MINIGSM-SVMATTELESHKGFWAAYLLPFCFFWIAVVILVFGRKYYVKEKMGDNVVQKSFKVCWIVAKNKLDYNAAKP---SYHPERNY--------- 347
                 *******.****************************************************************6333333...33332222......... PP

                 CHCHHHHHHHHH-HHTHHCHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHTST-BESSCB--GGGGHHHHHHHHHHHHHHHHHCTHHHHHHTTSSC CS
        PTR2 182 leivvegivfnimtkkkveevkrllrvvplflpliifwalyaQmgttlvlqartmnrkigsfeippaqlqvlnailillliPifdklvypllrkltlgl 280
                             +  ++v+e+kr ++++++f++++i+w+ y  m +t+v+q++tm+     + ip+++lqv+++i+++++iPif+++vyp++r++t ++
  CCD25319.1 348 -----------PWNDRFVDEMKRTIAACKVFVFYPIYWVQYGSMISTFVTQGSTMEL----HGIPNDFLQVFDSIALIIFIPIFENFVYPFIRRFT-PI 430
                 ...........245688****************************************....99*********************************.** PP

                 CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHT-------....---TCCCHHHHHHHHHHHHHCCCHHHHHHCTSS-TTTCCCCHHHHHHHHHHHHHH CS
        PTR2 281 tslkkiavGlflaslafaiaaivelkraktlpelpeaeev....qisvlwlipqylligiselfasiggleffykeapksmkslitglflltnalgnfl 375
                 ++++ki++G+f+  +a+++aa+++ ++++t+p++  + +     +i+v w+ip+y+li++se+fasi+gle++y++ap+smks+++++flltna+g++l
  CCD25319.1 431 RPITKITIGFFVGGCAMTWAAVLQHFIYNTGPCYDHPLSCdtpnKIHVAWQIPAYVLIAFSEIFASITGLEYAYSKAPPSMKSFVMSIFLLTNAFGSIL 529
                 *********************************88888777899******************************************************* PP

                 HHHHHHHHHCCC CS
        PTR2 376 ssvlatlvakat 387
                 +  l++++++++
  CCD25319.1 530 GIALSSVTVDPK 541
                 *******99954 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7  26.1     2e-12   1.8e-08      33     352 ..     138     530 ..     105     531 .. 0.70
   2 !   17.7   1.0   1.5e-07    0.0013     115     173 ..     508     583 ..     506     614 .. 0.77

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 2e-12
       MFS_1  33 eigllltlyalgaavaslplGrlsdr.fGrrrvlllglllfalglllllf.a........sslwlllvlrvlqGlgagalfpagaaliadwfpke.... 117
                 + gl + + ++ + v+ +++G+++d  +G    + +g  ++++g+++l++ a        +sl  ++v+ +l G+g+g++ ++  +liad  pk+    
  CCD25319.1 138 ATGLSYFFQFW-CYVTPVFGGFVADTyWGKYNSISVGTGFYIVGIFILFItAipsiasqnASLGGFIVSIILIGIGTGFIKANLSVLIADQLPKRkprv 235
                 44555555555.56788899*****9779999************555553414345566444448*****************************88*** PP

       MFS_1 118 ...............ergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll....peepperkrkspkeee......... 188
                                    ++ ++++++++G++  ++   l ++ + W a++++   ++ +a+v  +l++    +++++   ++ +k  +         
  CCD25319.1 236 kilksgerviedpniTLQNVFMVFYLMINIGSMSVMATTELESHKGFW-AAYLLPFCFFWIAVV--ILVFgrkyYVKEKMGDNVVQKSFKvcwivaknk 331
                 ***************99999999***************9999944444.555555555555533..244422224444444444444444777777765 PP

       MFS_1 189 .....kgtgpaplvp........awkallkdpvlw....illialllfffgfsglltllply.....lqevlgls.glllaglllallalvgail.all 263
                      ++       p        +w   + d   +    ++  ++++  + + ++ +++ ++     ++e +g++  +l++    +++ ++++++   +
  CCD25319.1 332 ldynaAK-------PsyhpernyPWNDRFVDE--MkrtiAACKVFVFYPIYWVQYGSMISTFvtqgsTMELHGIPnDFLQVF--DSIALIIFIPIfENF 419
                 5444411.......123333334444444444..122221222222222222224444444433333478888888544444..444444444444678 PP

       MFS_1 264 agrlsdrlgrrrrlllallllllaalglallavt......................ssavllllvlvliGfglgfvfpsllalasdlappeeagtasgl 340
                 +  +++r+ + r+++ + ++++++ +++ ++av                        + ++ + ++vli f   f++++ l +a + app++  +++++
  CCD25319.1 420 VYPFIRRFTPIRPITKITIGFFVGGCAMTWAAVLqhfiyntgpcydhplscdtpnkIHVAWQIPAYVLIAFSEIFASITGLEYAYSKAPPSMKSFVMSI 518
                 8888889888888888888888888889999999899999999999999998887777777777*********************************** PP

       MFS_1 341 fntagslggalg 352
                 f +++++g++lg
  CCD25319.1 519 FLLTNAFGSILG 530
                 **********98 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 1.5e-07
       MFS_1 115 pkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll..................p 173
                 p++ ++++++++ +++++G+ilg +l+++ +    + ++f  la+ + + ++lf+l +                   
  CCD25319.1 508 PPSMKSFVMSIFLLTNAFGSILGIALSSVTV-DPKFVWLFGGLAVSCGVTGILFWLCFrglnateeemnamdydaeI 583
                 88999**************************.667999************998666665555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1123  (0.062636); expected 358.6 (0.02)
Passed bias filter:                      626  (0.0349155); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.30s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 4263.41
//
Query:       CCD25320.1  [L=128]
Description: hypothetical protein NDAI_0E05030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-34  116.3   0.6    4.9e-34  115.9   0.6    1.2  1  ubiquitin       Ubiquitin family
    6.1e-31  106.1  10.4    9.3e-31  105.5  10.4    1.3  1  Ribosomal_L40e  Ribosomal L40e family
    2.2e-16   59.4   0.7      3e-16   59.0   0.7    1.2  1  Rad60-SLD       Ubiquitin-2 like Rad60 SUMO-like
      2e-05   24.9   0.1    7.4e-05   23.1   0.1    1.8  1  Ubiquitin_2     Ubiquitin-like domain
     0.0036   17.6   0.0     0.0055   17.0   0.0    1.3  1  Ubiquitin_5     Ubiquitin-like domain
     0.0038   17.1   0.0     0.0051   16.7   0.0    1.3  1  TBK1_ULD        TANK binding kinase 1 ubiquitin-like domain
     0.0073   16.4   0.1      0.015   15.4   0.1    1.6  1  Rad60-SLD_2     Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
      0.014   15.4   1.0        4.2    7.5   0.2    2.2  2  Ubiquitin_4     Ubiquitin-like domain
      0.024   15.2   0.1      0.031   14.8   0.1    1.4  1  DUF2407         DUF2407 ubiquitin-like domain
      0.083   12.7   0.0       0.11   12.3   0.0    1.2  1  Sde2_N_Ubi      Silencing defective 2 N-terminal ubiquitin do


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.6   2.7e-37   4.9e-34       1      72 []       3      74 ..       3      74 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.9 bits;  conditional E-value: 2.7e-37
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72
                i+vktl+gk+itleve+sdt++++K ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  CCD25320.1  3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                9********************************************************************986 PP

>> Ribosomal_L40e  Ribosomal L40e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5  10.4   5.2e-34   9.3e-31       1      50 []      78     127 ..      78     127 .. 0.99

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 5.2e-34
  Ribosomal_L40e   1 iepsLrqLAqKyncdKmiCrkCYArlpprAtnCrkkkCghsnnlrpKKkl 50 
                     iepsL++LA+KyncdK++CrkCYArlpprAtnCrk+kCgh+n+lrpKKkl
      CCD25320.1  78 IEPSLKVLASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKL 127
                     8***********************************************96 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.7   1.7e-19     3e-16       1      72 []       1      71 [.       1      71 [. 0.98

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 1.7e-19
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72
                ++i++k+ +gk+++++V+++ t+ +++++ ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  CCD25320.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
                89************************************.******************************996 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   4.1e-08   7.4e-05      15      80 ..      12      69 ..       1      70 [. 0.85

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4.1e-08
                 EEEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2 15 sserrfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80
                   +  +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   CCD25320.1 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 69
                 556678899************************99........5667899**********999995 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.1e-06    0.0055      34      92 ..      13      72 ..       4      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 3.1e-06
  Ubiquitin_5 34 klletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLk 92
                  +le++ + t +++ ski ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+
   CCD25320.1 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLR 72
                 566666677888999999******99***********************99987546666 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.9e-06    0.0051      19      53 ..      17      51 ..       3      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.9e-06
    TBK1_ULD 19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53
                +++ +t++++  +++++  i++++Q l+f g++l 
  CCD25320.1 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
                6789****************************973 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   8.4e-06     0.015      13      88 ..      11      72 ..       2      97 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.4e-06
                 -EEEEEEEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE- CS
  Rad60-SLD_2 13 sDigpvkfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvvr 88
                 + +  ++ ++++t++++k k+     +dke  p  +++ +li aGk Le+ +tl++++++        +++H+v+r
   CCD25320.1 11 K-TITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVLR 72
                 5.5556667777777777777.....4555533..34559****************955433......45777765 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0024       4.2       1      32 [.       1      32 [.       1      36 [. 0.94
   2 ?    6.8   0.0    0.0037       6.6      58      86 ..      43      70 ..      39      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0024
  Ubiquitin_4  1 lkvtvkkldgeslevvvkqnatvkdLkkaier 32
                 +++ vk l g+++ ++v+++ t+ ++k  i+ 
   CCD25320.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQD 32
                 7899*************************997 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0037
  Ubiquitin_4 58 LsfegekLkddkaklkeygirnkselsFv 86
                 L+f g++L+ d  +l++y i+++s+l+ v
   CCD25320.1 43 LIFAGKQLE-DGRTLSDYNIQKESTLHLV 70
                 889999986.6789************976 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.7e-05     0.031      14      68 ..      13      63 ..       5     126 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-05
     DUF2407 14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslklp 68
                ++L+++  ++ t+ ++k  i ++    +   + rLI+aG+ Led  +l++   ++
  CCD25320.1 13 ITLEVE--SSDTIDNVKSKIQDKE--GIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63
                566666..6789999999999987..67777789**************9754443 PP

>> Sde2_N_Ubi  Silencing defective 2 N-terminal ubiquitin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   6.4e-05      0.11       2      88 ..       2      76 ..       1      77 [. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 6.4e-05
  Sde2_N_Ubi  2 nvlvssfdgltlpstlsltlpstatvsdlvdklserlpeslkesliLttvsnkqlllssdvslssllassadsellslrllvrlrGG 88
                +++v+++ g+    t++l++ s+ t+ ++ +k++++      +   L  + + ql  ++  +ls++  ++++    +l+l++rlrGG
  CCD25320.1  2 QIFVKTLTGK----TITLEVESSDTIDNVKSKIQDKEGIPPDQ-QRLIFAGK-QL--EDGRTLSDYNIQKES----TLHLVLRLRGG 76
                8999*99996....999*****************998877555.45555554.66..99999****999999....99********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 945.01
//
Query:       CCD25321.1  [L=1973]
Description: hypothetical protein NDAI_0E05040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.5e-28   98.3  25.8    3.5e-28   98.3  25.8   16.6 16  TPR_MLP1_2    TPR/MLP1/MLP2-like protein
  ------ inclusion threshold ------
          2    8.6   5.4        4.5    7.5   0.3    4.3  2  DUF3539       Protein of unknown function (DUF3539)


Domain annotation for each model (and alignments):
>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3  13.1     0.018   1.6e+02      53     127 ..      72     149 ..      54     151 .. 0.85
   2 ?   -9.0  25.7         2   1.8e+04      10     122 ..     127     239 ..     118     267 .. 0.46
   3 ?   -2.6  13.7      0.59   5.3e+03      57     118 ..     248     309 ..     222     317 .. 0.73
   4 ?   -0.4  18.7      0.13   1.1e+03      10     118 ..     378     489 ..     371     494 .. 0.80
   5 ?   -0.3  11.9      0.11     1e+03      56     126 ..     537     607 ..     510     610 .. 0.72
   6 ?   -4.3  16.6         2   1.8e+04      10      92 ..     546     626 ..     534     672 .. 0.65
   7 ?   -0.5  10.4      0.13   1.2e+03       4     101 ..     666     763 ..     663     769 .. 0.91
   8 !   10.0  21.4   7.4e-05      0.67       4     127 ..     771     891 ..     768     893 .. 0.94
   9 !   13.2  13.7   7.8e-06      0.07       1     115 [.     911    1022 ..     911    1024 .. 0.94
  10 !   98.3  25.8   3.9e-32   3.5e-28       3     125 ..    1012    1134 ..    1010    1135 .. 0.98
  11 ?    3.0  11.0     0.011        98       3      90 ..    1169    1262 ..    1167    1267 .. 0.79
  12 !    7.9  22.1   0.00034       3.1       5     118 ..    1268    1382 ..    1264    1384 .. 0.97
  13 ?   -0.9  11.5      0.18   1.6e+03       4      84 ..    1381    1464 ..    1380    1472 .. 0.80
  14 ?   -6.6   9.2         2   1.8e+04      67      86 ..    1513    1532 ..    1490    1569 .. 0.49
  15 ?   -0.5   4.4      0.14   1.2e+03      35      90 ..    1617    1674 ..    1613    1692 .. 0.70
  16 ?   -8.4   6.2         2   1.8e+04      81     118 ..    1865    1902 ..    1846    1906 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.018
  TPR_MLP1_2  53 aedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelek...elselekriedlneqNklLhdQlE 127
                 +++ +++++l++el el + ++++ +e e+a ++++e+ee+    ++ele+   ++ +le+ + +l+++ + L++ l+
  CCD25321.1  72 KTNNTTIKKLKNELTELIDSYESVCKEKEDAYKKIAEEEEKKIDNRDELESkliQIHSLEENVSELQSKKQELIKSLD 149
                 4556789*******************************************9333467899999999999888887776 PP

  == domain 2  score: -9.0 bits;  conditional E-value: 2
  TPR_MLP1_2  10 ikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelsel 108
                 i+sl+e+ +e+++k q+l + l     +++e   + e   ++++++ +++ +l +e ++lk    + ++++e++++ele+  ++    +e+l ++ +++
  CCD25321.1 127 IHSLEENVSELQSKKQELIKSLDDRITELNEYRHNIELLNNEKSKTRNKILQLENENQDLKINDLSQRTQLERLSQELETINKEKLWLEERLGEKGEQF 225
                 556666666666666666666666666666666666666666666666666666666555544444444444444444432222222222222222222 PP

  TPR_MLP1_2 109 ekriedlneqNklL 122
                  + +e   + N+ L
  CCD25321.1 226 DSYREKSINENQDL 239
                 22222222222222 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.59
  TPR_MLP1_2  57 kelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneq 118
                 +el ++++    l+++  el +++ +++++l++ ++s ++ k + ekel+  ++ i  l++q
  CCD25321.1 248 NELDQMKSTNCVLQERTDELSNKLRDTSTNLKNIQQSRNNDKATHEKELTLKQQLIVVLQSQ 309
                 46777777777788888888888899999999999999999999999988877777766666 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.13
  TPR_MLP1_2  10 ikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqk...eelekel 105
                  ++l+++ ++a +++  l+++l+ ++++ ++ +++ e+ +   ++++ +l+a+r +++  ++e++e++  +e+a++e +   +++++ +   +++e+e+
  CCD25321.1 378 SDDLRNSLAKAYDDIDVLKKKLNDEQSQRENFEKNLEEFMDDLETELPTLEAYRHRAAAREEELKEATLLLEKANKEKSLVSSELNQAQsriQSIEQEI 476
                 6788999999999********************************************999999999998888887765555544444431115667777 PP

  TPR_MLP1_2 106 selekriedlneq 118
                 + + k++ dl +q
  CCD25321.1 477 KLVAKQRSDLANQ 489
                 7777777777776 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.11
  TPR_MLP1_2  56 vkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeeleke.lselekriedlneqNklLhdQl 126
                 ++ l+++++   el+++  el +   ++ ++lee+ +  + +k+++e+e ++e+++ i  l++ N+ L  ++
  CCD25321.1 537 SERLTKFKDI-IELQQKNMELLKTTRELATKLEEEDKIKQAEKSRIEEEtIAEAKEAILTLQNYNSSLTAKI 607
                 5566666654.5666666666666666777788887777888888876649***************998776 PP

  == domain 6  score: -4.3 bits;  conditional E-value: 2
  TPR_MLP1_2  10 ikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleesee 92 
                 i +l++++ e+ ++ ++l ++le++ +i ++ + + e+e +  a+  +++ +l +  ++l+a+ia l++e+e+ k   +++ +
  CCD25321.1 546 IIELQQKNMELLKTTRELATKLEEEDKIKQAEKSRIEEETIAEAK--EAILTLQNYNSSLTAKIAALTKELETYKVLSNTEDS 626
                 455666666666666666666666666666666666666664443..445555566666666666666666666655555444 PP

  == domain 7  score: -0.5 bits;  conditional E-value: 0.13
  TPR_MLP1_2   4 ksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeel 101
                 + l+++i +l+e++++   +l+  ++  +  +e++k  q++    +++++   k l++lr+ + e  ++ +e  +++ ++++el++ e++w+  ++e+
  CCD25321.1 666 NILNDKIFALDEKNNHISIELAREKSAKQLAEERLKLLQKSMDMTITENERLQKRLNSLRNVVVEQDKRTHETINSLIKTRSELATVENKWNVSQNEI 763
                 678888888999999999999999999999999***********************************************************999876 PP

  == domain 8  score: 10.0 bits;  conditional E-value: 7.4e-05
  TPR_MLP1_2   4 ksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeele 102
                 + l++e+++l+eek++ +  ++ lq+   + + ++++ q+k+ +el+  + +    ++lr++l+e+++ + +l +e  ++k ++ ++++s++e+ ++ e
  CCD25321.1 771 EMLKNELTRLNEEKNSMKLLVTRLQTLQSEREHLLSTTQDKFNKELNDLEGT---CNDLRKKLKEAEENYGSLMEETTELKDDFRQKKKSLKEEMSNVE 866
                 6799******************************************987766...567899************************************** PP

  TPR_MLP1_2 103 kelselekriedlneqNklLhdQlE 127
                 k+ se+ ++  + +  N+ L +Ql 
  CCD25321.1 867 KRYSEIVEKERETKWENTRLTKQLK 891
                 ***********************95 PP

  == domain 9  score: 13.2 bits;  conditional E-value: 7.8e-06
  TPR_MLP1_2    1 kelksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeq 97  
                  +e++sl++e++ lk+e +e+ ++ +++++d+e   ++ ++ ++   + l+k a+  + ++++    n++ +  + lk++ +++++ele +++  e +
  CCD25321.1  911 EEISSLQKELQVLKNELTESYSQTESYRKDIELLNQSIADINK---QVLNKEAAFKERITEVELAKNNIADSNTVLKTQIDDLNNELEVQKKLYEDE 1004
                  589***************************************9...899999999999*************************************** PP

  TPR_MLP1_2   98 keelekelselekriedl 115 
                  k ++ ++ +ele+  + l
  CCD25321.1 1005 KINFTRNANELERVTKGL 1022
                  ***********9977766 PP

  == domain 10  score: 98.3 bits;  conditional E-value: 3.9e-32
  TPR_MLP1_2    3 lksleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqke 99  
                   ++le   k l+++k ++e+kl++l++dle+q ++a++aq++Ye+el++ha+ +k++++lre+ +++++eiael+ +a +ak  l+e++ sw++q++
  CCD25321.1 1012 ANELERVTKGLEQSKRDYEDKLKSLMKDLEEQVKYANKAQNNYEQELQNHANVSKTISQLREQTQHYRTEIAELTISATDAKRLLNENQISWQKQRD 1108
                  57899999***************************************************************************************** PP

  TPR_MLP1_2  100 elekelselekriedlneqNklLhdQ 125 
                  e+ek+++ ++krie+ +eqNk+L +Q
  CCD25321.1 1109 EYEKQIEFFKKRIEEESEQNKMLFEQ 1134
                  ************************99 PP

  == domain 11  score: 3.0 bits;  conditional E-value: 0.011
  TPR_MLP1_2    3 lksleeeikslkeekeeaeaklqklqedlekqa...eiakeaqqkYerelvkhaedvkelqa...lreelnelkaeiaelkaeaesakaelees 90  
                   + l+e ++  ++e++ ++++l+++++d ++     +  ke   +Y   l +h++ + +l++   lre   +l++e  el+++++ +++e+e+ 
  CCD25321.1 1169 RDLLQERLNVTEAEEKLLRERLTSIEKDFRATDlelQKIKEETHNYPDLLEQHKTVMSQLTQldlLRESNITLRNETIELQSKNQHLQTEVENL 1262
                  566888888889999999999999999988765111555667789999*****99999888733369999999999999999999999999876 PP

  == domain 12  score: 7.9 bits;  conditional E-value: 0.00034
  TPR_MLP1_2    5 sleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYer.elvkhaedvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkee 100 
                   le+e+++l++ +ee +++l+   e+ e  +++ ++   kY+r   v+h++ ++e ++l ++l+e  +e +el ++ e++k++  e+ ++ +  +++
  CCD25321.1 1268 PLETELQTLTNLIEEKDKQLSICHEESERWKQRSQDILSKYQRiDPVEHENLAEERNRLQAQLEEKSKENEELGNRFEKLKKQAHEKLNASKISQNS 1364
                  589***************************************9789*************************************************** PP

  TPR_MLP1_2  101 lekelselekriedlneq 118 
                  l  ++++le++ ++l +q
  CCD25321.1 1365 LTIQINDLEAKKKELLSQ 1382
                  ***************888 PP

  == domain 13  score: -0.9 bits;  conditional E-value: 0.18
  TPR_MLP1_2    4 ksleeeikslkeekeeaeaklqklqe..dlekqaeiakeaqqkYerelvkhaedvkelqa.lreelnelkaeiaelkaeaesak 84  
                  ++le+e++ +++ ++++e ++++  +   +++q e+a    +++e+  ++  e +k++++ l++e+++l++e ++l++e+   k
  CCD25321.1 1381 SQLETEKEGKLSLEKRLEVTMKNSHDivSIQSQLEEALMKSKDFETKFINSVESSKQIEEnLNSEIKKLQEESSKLQEELAHEK 1464
                  678899999999999999888888774467888888999999999999999999999974499999999999999999886655 PP

  == domain 14  score: -6.6 bits;  conditional E-value: 2
  TPR_MLP1_2   67 nelkaeiaelkaeaesakae 86  
                  ++l+aei++lkae e+ + e
  CCD25321.1 1513 KKLQAEINKLKAEYETKQIE 1532
                  45566666666655554433 PP

  == domain 15  score: -0.5 bits;  conditional E-value: 0.14
  TPR_MLP1_2   35 aeiakeaqqkYerelvkhaedv..kelqalreelnelkaeiaelkaeaesakaelees 90  
                  +ei +e  +kYe+el+  ++ +  +  q++  + + l+++i++l++++++ak++  + 
  CCD25321.1 1617 KEIQEELARKYEEELQVVKKKAfdEGRQQVLMKTSFLEKKITKLESDLQNAKSNTGAT 1674
                  5667777888888876554433115556666666889999999999999999876655 PP

  == domain 16  score: -8.4 bits;  conditional E-value: 2
  TPR_MLP1_2   81 esakaeleeseesweeqkeelekelselekriedlneq 118 
                  ++  ++l ++e++ ee++e  +++ ++ ++ + + ++q
  CCD25321.1 1865 DNNDENLGKKEQKEEEEREGNDEDNNNNNNNVSENSSQ 1902
                  33445566666666666666666666666666665555 PP

>> DUF3539  Protein of unknown function (DUF3539)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.3    0.0005       4.5      36      79 ..     673     718 ..     652     723 .. 0.80
   2 ?   -0.9   0.7      0.22   1.9e+03      49      84 ..    1086    1119 ..    1071    1134 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0005
                 EEEEE-SSSEEEEEE-HHHHHHHHHHHHHHHHHHSHHH..HHHHHH CS
     DUF3539  36 FlvtlkeeelkfepisrsdArllvenrlrllrregeee..eleqlq 79 
                 F + +k++++++e    + A++l+e+rl+ll+++ +++  e e+lq
  CCD25321.1 673 FALDEKNNHISIELAREKSAKQLAEERLKLLQKSMDMTitENERLQ 718
                 677888999***********************99766522555555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.22
                  EE-HHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH CS
     DUF3539   49 pisrsdArllvenrlrllrregeeeeleqlqkiykq 84  
                  +is +dA++l++++  +   +++ +e+e+  +++k+
  CCD25321.1 1086 TISATDAKRLLNENQIS--WQKQRDEYEKQIEFFKK 1119
                  57888888777665333..33455666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1973 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4361  (0.243237); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                       276  (0.0153941); expected 17.9 (0.001)
Passed Fwd filter:                        87  (0.00485247); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 5.36u 0.54s 00:00:05.90 Elapsed: 00:00:01.22
# Mc/sec: 4893.15
//
Query:       CCD25322.1  [L=451]
Description: hypothetical protein NDAI_0E05050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-08   32.3   0.0    1.3e-07   31.3   0.0    1.5  1  DAGK_cat    Diacylglycerol kinase catalytic domain
  ------ inclusion threshold ------
      0.072   13.0   2.0        0.2   11.6   2.0    1.8  1  RE_BsaWI    BsaWI restriction endonuclease type 2
        1.5    9.0  10.1       0.25   11.4   4.7    2.3  2  SUIM_assoc  Unstructured region C-term to UIM in Ataxin3


Domain annotation for each model (and alignments):
>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   2.1e-11   1.3e-07      14     105 ..      98     200 ..      83     214 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 2.1e-11
                 THHHHH.HHCHHHHHHCTCEEEEEE--STTHHHHHHHHHHHC.....C-.SEEEEEESHHHHHHHHHHHCT....HHCTTSEEEEEE-SS--HHHHHCT CS
    DAGK_cat  14 kgekll.rkvrelleeagvelelieteepgdakelakeakee.....gv.dlivvaGGDGtvsevlnglle....elatkpplgiiPlGtgNdlaralg 101
                 k ++++   ++++l++ ++++el++t+++++ k++a++ + +     ++   ++ ++GD t+se +n l      + + ++ + +iP+Gt+N+ + +l+
  CCD25322.1  98 KENDFYaIIMEPILSKLNIKFELFKTTSKDSIKSFANNFSIKtkdttKIdYNLIFLSGDTTISEFFNNLPPqqpqTSKINLNILTIPMGTANAWSNSLN 196
                 444444455789***********************99887765555533456999****************87666666699999*************9 PP

                 --SS CS
    DAGK_cat 102 igkd 105
                 ++  
  CCD25322.1 197 LNCP 200
                 8764 PP

>> RE_BsaWI  BsaWI restriction endonuclease type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.0   3.4e-05       0.2       3      91 ..      48     139 ..      45     154 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.4e-05
    RE_BsaWI   3 elenvkrllvikygeesvlpdvDliiykkdknklkliaiIsaKtSlreRvtqtgfwslklkldkktkkikvvl...vtpdkdnelkkkkskk 91 
                 ++++ +++l  +++  ++    Dli+ +  ++++  + iI +  S   R ++  f++++++   ++ +ik+ l   +++d  ++++++ s k
  CCD25322.1  48 QQQQQQQQLHNNNIPTILTTSKDLILNSDYEKNNTKLIIIDSTHSGLGRNKENDFYAIIMEPILSKLNIKFELfktTSKDSIKSFANNFSIK 139
                 5556666777777888888999*****9978888888899*********************988899***9872224456666666663333 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   4.7   4.2e-05      0.25      29      44 ..      44      58 ..       7      71 .. 0.59
   2 ?   -0.5   0.2      0.22   1.3e+03       1      14 [.     165     178 ..     165     182 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.2e-05
  SUIM_assoc 29 Kqeqqqqqqqqqqdpp 44
                K +qqqqqqqqqq   
  CCD25322.1 44 K-QQQQQQQQQQQLHN 58
                2.22222222222222 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.22
  SUIM_assoc   1 NisqdvPqtsgtql 14 
                 N++   Pqts  +l
  CCD25322.1 165 NLPPQQPQTSKINL 178
                 788999***98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1672  (0.0932567); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 3366.86
//
Query:       CCD25323.1  [L=86]
Description: hypothetical protein NDAI_0E05060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-20   71.2   0.1    6.8e-20   71.0   0.1    1.1  1  Pcc1      Transcription factor Pcc1


Domain annotation for each model (and alignments):
>> Pcc1  Transcription factor Pcc1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.1   3.8e-24   6.8e-20       1      74 []       7      84 ..       7      84 .. 0.89

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 3.8e-24
                EEEEEEE-SSHHHHHHHHHHHHHHCHC-TTECEE....EEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHH CS
        Pcc1  1 sltisvpfpterlAsialrtLqvDkelsplavkr....slslegnvLqveykAttnrmLRvavngfleslglvletme 74
                +l+i++pfp+er A+ia+++L++D+ l+p++ ++      +  +nvL v++++ + r LRv v+++l+s++++letm+
  CCD25323.1  7 TLEIRIPFPEERMATIAQQVLSPDPILKPEDFQVeylkPATQHNNVLLVKFQSIDERVLRVGVSSVLDSIKTILETMD 84
                589**************************8766622444456999********************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       325  (0.0181271); expected 358.6 (0.02)
Passed bias filter:                      263  (0.014669); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 634.84
//
Query:       CCD25324.1  [L=1556]
Description: hypothetical protein NDAI_0E05070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.13   12.7   0.1       0.53   10.8   0.1    2.1  1  Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; D


Domain annotation for each model (and alignments):
>> Acetyltransf_11  Udp N-acetylglucosamine O-acyltransferase; Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   2.9e-05      0.53      29      69 ..     395     433 ..     390     455 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2.9e-05
                      -HHHHHHHHHHHHHHHSSSS-HHHHHHHHHHHTTTSCCHHH CS
  Acetyltransf_11  29 seeeikalkkayrllyrsglsleealeeleeeaeespevqe 69 
                      s++ i++l+++y+l+++++ +l++++++l    +++ ++++
       CCD25324.1 395 SQALIQKLQDIYKLIVKQEIQLQDRCSQLT--TSQTTDLKN 433
                      56679************************5..334444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2511  (0.140052); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.42u 0.34s 00:00:01.76 Elapsed: 00:00:00.53
# Mc/sec: 8868.23
//
Query:       CCD25325.1  [L=551]
Description: hypothetical protein NDAI_0E05080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-217  722.0   0.0   3.2e-217  721.7   0.0    1.0  1  PEPCK_ATP  Phosphoenolpyruvate carboxykinase
  ------ inclusion threshold ------
      0.054   12.8   0.1       0.11   11.8   0.1    1.5  1  ATPase     KaiC
      0.065   13.4   0.0       0.23   11.6   0.0    1.9  2  AAA_33     AAA domain
       0.15   11.8   0.1       0.43   10.3   0.1    1.8  1  AAA_29     P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> PEPCK_ATP  Phosphoenolpyruvate carboxykinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  721.7   0.0  7.2e-221  3.2e-217       2     465 .]      35     503 ..      34     503 .. 0.99

  Alignments for each domain:
  == domain 1  score: 721.7 bits;  conditional E-value: 7.2e-221
                 -EEES--HHHHHHHHHHTTS-EE-TTS-EEE--TT--S--GGGEEEE--TTTTTTS-BTTTBEEE-HHHHHHHHHHHHHHHHTS.-EEEEEEEE-SSTT CS
   PEPCK_ATP   2 kvirnlsvaeLveealkreegkltstgalvvetgkktgRspkdkfiVedeetedkiwWgkvnkpiseekfealkekvleylkek.elyvvdafagadpk 99 
                 ++ rn+++a L+e+al+++++ ++stgalv+++g+ktgRsp+dk+iVe+e+++d+iwWg vnkp+se++++ ++e++++yl+++ +ly+vdafag+dp+
  CCD25325.1  35 TIRRNAPAAILYEDALHERNTIISSTGALVAYSGEKTGRSPRDKRIVEEETSKDDIWWGPVNKPCSERTWSINRERAADYLRTRdHLYIVDAFAGWDPE 133
                 6789********************************************************************************9************** PP

                 T-EEEEEEES-HHHHHHHHHHSBGGS-S-TTT-.--SEEEEEETT----HHHH--SSS-EEEEETTTTEEEEES---THHHHHHHHHHHHHHHH.HTT- CS
   PEPCK_ATP 100 yrlkvrviterawqalfvknllirpteeeleef.epdftilnapefkadpekdglnsetvvalnlekklvlilgteYaGEikKsifsvmnyllp.kkgv 196
                 yr+kvrv++ ra++alf++n+lirpt+eel+ef epdft+ na++f a+ ++++++s+t++ +n+++ +++ilgteYaGE+kK+if+vm yl+p ++++
  CCD25325.1 134 YRIKVRVVCARAYHALFMTNMLIRPTQEELAEFgEPDFTVWNAGQFPANFHTQDMSSKTTIEINFKAMEMVILGTEYAGEMKKGIFTVMFYLMPvHHNI 232
                 **********************************************************************************************99*** PP

                 EEEEEEEEE-T.TS-EEEEEE-TTSSHHHHH-BTTB-EEESSEEEE-SS-EEES-SEEEEE-TT--TTTSHHHHHHHSTT-EEES-EE-TTT--EETT- CS
   PEPCK_ATP 197 lsmhcsanvgekkgdvalfFGLSGtGKTtLsadperkligdDehgwsdegvfniegGcYaKtidLskekepeiynairfgavlENvvldeetrevdfdd 295
                 l++h+san g ++gdv+lfFGLSGtGKTtLsadp+r ligdDeh+wsd+gvfniegGcYaK+i+Ls+ekepei++ai++g++lENv++d++tr+v++dd
  CCD25325.1 233 LTLHSSANQGIRNGDVTLFFGLSGTGKTTLSADPHRLLIGDDEHCWSDKGVFNIEGGCYAKCINLSHEKEPEIFEAIKYGSILENVIYDPKTRVVHYDD 331
                 *************************************************************************************************** PP

                 -SS-S--EEEEEGGGSSSB-TTSEE.--EEEEEEEE--TTS-S-SEEEE-HHHHHHHHHH-EEEE-----------EEEE-GGG-GGG-SS-HHHHHHH CS
   PEPCK_ATP 296 tslteNtrvaypiehienakeesva.ghpkniifLtadafgvlPpvskLtkeqamyhFlsGytakvaGtergvtepeatFsacfgapFlplhpteyael 393
                 ++lteNtr+aypie+i++ak +++a +hp+nii+Lt+da gvlPpvskLt+eq myhF+sGyt+k+aGte+gvtepe+tFs+cfg+pFl+lhp +ya++
  CCD25325.1 332 STLTENTRCAYPIEFIPSAKIPCLAdTHPSNIILLTCDASGVLPPVSKLTPEQVMYHFISGYTSKMAGTEQGVTEPEPTFSSCFGQPFLALHPIRYATM 430
                 ***********************9999************************************************************************ PP

                 HHHHHHHH--EEEEEE-SEESSSTTT.SEE--HHHHHHHHHHHHTTCCCTS-EEE-TTT--EEES-BTTC-GG CS
   PEPCK_ATP 394 LaeklekhnakvyLvNtGwtggaygv.gkrislkatraiikaildgeleavefekdpvfglevptevpgvpse 465
                 La+k++kh+a+++L+NtGwtg++y   gkr++lk+trai+++i+dg+l++ efe+ pvf+l+vpt+v++vp+e
  CCD25325.1 431 LAKKISKHSANAWLINTGWTGSSYVSgGKRCPLKYTRAILDSIHDGSLAKQEFETLPVFNLQVPTNVNNVPKE 503
                 ***********************99879********************988*******************986 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   2.4e-05      0.11       8      37 ..     235     264 ..     228     265 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.4e-05
      ATPase   8 lDeilkgGipegrvvlitGepGtGKtifal 37 
                 l    ++Gi +g v+l  G +GtGKt++++
  CCD25325.1 235 LHSSANQGIRNGDVTLFFGLSGTGKTTLSA 264
                 5555689********************986 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.93   4.2e+03      51      77 ..      99     126 ..      76     147 .. 0.78
   2 ?   11.6   0.0   5.1e-05      0.23       1      17 [.     248     264 ..     248     276 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.93
      AAA_33  51 vldrlyqilnelarkalsagrn.vilda 77 
                 +++r++ i +e+a+++l+ + + +i+da
  CCD25325.1  99 CSERTWSINRERAADYLRTRDHlYIVDA 126
                 6678888889999999988888677775 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.1e-05
      AAA_33   1 lvllvGlpGsGKstlae 17 
                 ++l+ Gl+G+GK+tl+ 
  CCD25325.1 248 VTLFFGLSGTGKTTLSA 264
                 689************97 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   9.7e-05      0.43      20      38 ..     244     262 ..     231     275 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 9.7e-05
      AAA_29  20 dlkg.atlltGpsGsGKSTl 38 
                 + +g +tl+ G sG+GK+Tl
  CCD25325.1 244 R-NGdVTLFFGLSGTGKTTL 262
                 4.4559*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3652.47
//
Query:       CCD25326.1  [L=889]
Description: hypothetical protein NDAI_0E05090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-28   97.8  16.2    1.4e-13   50.8   0.1    3.8  3  Myb_DNA-binding  Myb-like DNA-binding domain
    5.2e-27   93.9  12.7    1.7e-10   41.0   0.0    4.0  3  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0086   16.1  11.2       0.58   10.2   0.0    4.6  4  SLIDE            SLIDE
     0.0093   16.1   1.3        3.4    7.9   0.1    4.2  5  SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
  ------ inclusion threshold ------
      0.023   14.8   0.0        7.2    6.8   0.0    3.5  2  Rap1_C           TRF2-interacting telomeric protein/Rap1 - C 


Domain annotation for each model (and alignments):
>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   4.7   0.00046       1.6       1      42 [.      68     146 ..      68     147 .. 0.85
   2 !   50.8   0.1   3.8e-17   1.4e-13       1      44 [.     156     199 ..     156     201 .. 0.95
   3 !   43.9   0.9   5.6e-15     2e-11       3      45 ..     211     253 ..     210     254 .. 0.96

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00046
                      CSSSBHHHHHHHHHHHHH........HT.TC...............HHHHHHHHT.S............S-HHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkk........hG.nr...............WkkIaerlg.g............Rtekqcrsrw 42 
                      r++W++++d++L ++++          G ++               W++ a +++ +            Rt+k+ r rw
       CCD25326.1  68 RNSWSKDDDKKLKKLINDtlinmnynNGiDDiktiqqsmsitkeipWDLLATEFNaTtndnhnkkvtnkRTAKDLRKRW 146
                      799*******************888844444666666677777899******99984579999999999********** PP

  == domain 2  score: 50.8 bits;  conditional E-value: 3.8e-17
                      CSSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44 
                      +gkWt+eEdelL++a  khG+ W +++ +++gRte qc  r+  
       CCD25326.1 156 KGKWTPEEDELLIKAYSKHGSHWLSVSMEIPGRTEDQCAKRYIE 199
                      79***************************************976 PP

  == domain 3  score: 43.9 bits;  conditional E-value: 5.6e-15
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrny 45 
                       Wt eEd+ L+  vkk+G +W+kI++++  R    cr+rwr++
       CCD25326.1 211 DWTNEEDLSLISKVKKYGTKWRKISSEMEFRPSLTCRNRWRKI 253
                      6****************************************96 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   5.8   3.1e-10   1.1e-06       1      60 []      71     167 ..      71     167 .. 0.84
   2 !   41.0   0.0   4.8e-14   1.7e-10       1      46 [.     159     204 ..     159     208 .. 0.94
   3 !   40.7   0.9     6e-14   2.2e-10       1      43 [.     212     254 ..     212     294 .. 0.86

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 3.1e-10
  Myb_DNA-bind_6   1 WteeEdeiLlklvek......ygn..................dWknIaealn.............rRtpkqcfdrwknkLrpkisrkkwskeedi 58 
                     W++++d++L kl  +      y+n                   W + a+++n             +Rt+k+++ rw  +L+p+++++kw++eed+
      CCD25326.1  71 WSKDDDKKLKKLINDtlinmnYNNgiddiktiqqsmsitkeiPWDLLATEFNattndnhnkkvtnKRTAKDLRKRWSGSLDPNLKKGKWTPEEDE 165
                     ***************99988844455544444444556655568888888889*****************************************9 PP

  Myb_DNA-bind_6  59 rL 60 
                     +L
      CCD25326.1 166 LL 167
                     87 PP

  == domain 2  score: 41.0 bits;  conditional E-value: 4.8e-14
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkLrpk 46 
                     Wt+eEde+L+k ++k+g+ W +++ +++ Rt  qc  r++++L p+
      CCD25326.1 159 WTPEEDELLIKAYSKHGSHWLSVSMEIPGRTEDQCAKRYIEVLGPS 204
                     ***************************55************99886 PP

  == domain 3  score: 40.7 bits;  conditional E-value: 6e-14
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwknkL 43 
                     Wt eEd  L++ v+kyg +W++I++++ +R +++c++rw++ +
      CCD25326.1 212 WTNEEDLSLISKVKKYGTKWRKISSEMEFRPSLTCRNRWRKII 254
                     ****************************************933 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   2.4      0.15   5.4e+02       3      78 ..      34     105 ..      20     119 .. 0.49
   2 !    7.8   0.0   0.00092       3.3      44      79 ..     152     185 ..     120     192 .. 0.74
   3 !   10.2   0.0   0.00016      0.58      48      83 ..     208     242 ..     194     252 .. 0.84
   4 ?   -2.7   0.3       1.6   5.8e+03      18      50 ..     784     816 ..     768     829 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.15
       SLIDE   3 iikqIekgekkieklkelkellkkkveqyknplqelkikyppsnkgkkeyteeeDrfllvllakyGygnyekikke 78 
                   ++Iek+++k +    l +++k+   q+++   +     ++s+ + k+ ++     l+++ ++ G+++ + i++ 
  CCD25326.1  34 STTRIEKKKEKKNTAFDLLDVTKSLGYQIHRKSGR----NSWSKDDDKKLKKLINDTLINMNYNNGIDDIKTIQQS 105
                 22333333333333333333333333333222211....1122222223455555567777777777777777765 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00092
       SLIDE  44 psnkgkkeyteeeDrfllvllakyGygnyekikkei 79 
                 p+ k+ k +t eeD+ l+ +++k+G + +  + +ei
  CCD25326.1 152 PNLKKGK-WTPEEDELLIKAYSKHGSH-WLSVSMEI 185
                 4555554.*****************87.77777766 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00016
       SLIDE  48 gkkeyteeeDrfllvllakyGygnyekikkeiresp 83 
                 + + +t+eeD  l+  ++kyG + ++ki +e+  +p
  CCD25326.1 208 RLRDWTNEEDLSLISKVKKYGTK-WRKISSEMEFRP 242
                 4567*****************98.****99987655 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 1.6
       SLIDE  18 kelkellkkkveqyknplqelkikyppsnkgkk 50 
                 ++  + + + v++ ++  + ++++yp++n++kk
  CCD25326.1 784 NNSSSNTPSSVSTNNSTSTGIHLSYPTTNTNKK 816
                 444445555666666666677788887777765 PP

>> SANT_DAMP1_like  SANT/Myb-like domain of DAMP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.64   2.3e+03      20      42 ..      60      84 ..      43      87 .. 0.71
   2 ?   -2.0   0.0       1.2   4.1e+03      52      72 ..     126     146 ..     119     151 .. 0.84
   3 ?    2.8   0.1     0.038   1.4e+02      23      51 ..     153     181 ..     129     200 .. 0.89
   4 !    7.9   0.1   0.00094       3.4      20      57 ..     197     240 ..     179     256 .. 0.78
   5 ?   -0.2   0.0      0.33   1.2e+03      32      70 ..     489     532 ..     477     535 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.64
  SANT_DAMP1_like 20 Yeellke..edWtkeetdyLfdlck 42
                     Y+ + k+  ++W+k++ ++L +l++
       CCD25326.1 60 YQIHRKSgrNSWSKDDDKKLKKLIN 84
                     55555555578*****999999876 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
  SANT_DAMP1_like  52 aDryelekkkkrsledlkery 72 
                      +D+++ + ++kr+  dl++r+
       CCD25326.1 126 NDNHNKKVTNKRTAKDLRKRW 146
                      57777777999******9996 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.038
  SANT_DAMP1_like  23 llkeedWtkeetdyLfdlckeydlrfvvi 51 
                       lk+ +Wt ee + L++ +++   +++ +
       CCD25326.1 153 NLKKGKWTPEEDELLIKAYSKHGSHWLSV 181
                      588899*************9999999866 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.00094
  SANT_DAMP1_like  20 Yeellke......edWtkeetdyLfdlckeydlrfvviaDryel 57 
                      Y e+l        +dWt+ee   L++ +k+y +++  i    e+
       CCD25326.1 197 YIEVLGPssegrlRDWTNEEDLSLISKVKKYGTKWRKISSEMEF 240
                      555555455555568********************999877766 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.33
  SANT_DAMP1_like  32 eetdyLfdlckeydlrfvv...iaDryelek..kkkrsledlke 70 
                      e ++ L++ +k+y l+  +   i+++y +++  +++ ++  lk+
       CCD25326.1 489 ELVKELIEQAKKYSLKISIhqhIHNHYGSQPviNNQNNIHTLKS 532
                      56789999999**9997544448888988778877777877775 PP

>> Rap1_C  TRF2-interacting telomeric protein/Rap1 - C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.011        38      47      80 ..      70     146 ..      43     147 .. 0.86
   2 ?    6.8   0.0     0.002       7.2      40      57 ..     151     181 ..     115     253 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.011
      Rap1_C  47 iWteedDeaL...........................................kagderdlerlekkhgeerierRr 80 
                  W++ dD++L                                            +++++  +++ +k + + +++R+
  CCD25326.1  70 SWSKDDDKKLkklindtlinmnynngiddiktiqqsmsitkeipwdllatefnATTNDNHNKKVTNKRTAKDLRKRW 146
                 6*********9999999999999999999999999999999999999999998778888889999999999999998 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.002
      Rap1_C  40 lpknkrGiWteedDeaL.............k 57 
                  p+ k+G Wt+e+De L              
  CCD25326.1 151 DPNLKKGKWTPEEDELLikayskhgshwlsV 181
                 244455**********976666555555550 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (889 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2127  (0.118635); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.97u 0.33s 00:00:01.30 Elapsed: 00:00:00.49
# Mc/sec: 5418.94
//
Query:       CCD25327.1  [L=368]
Description: hypothetical protein NDAI_0E05100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00026   20.3   2.4    0.00026   20.3   2.4    2.0  2  SKG6      Transmembrane alpha-helix domain
  ------ inclusion threshold ------
       0.12   12.8   0.2       0.66   10.4   0.0    2.3  2  DUF2681   Protein of unknown function (DUF2681)
       0.16   11.8   0.0       0.32   10.9   0.0    1.5  1  LapA_dom  Lipopolysaccharide assembly protein A domain
        2.7    7.7  10.3       0.37   10.5   1.2    2.1  2  DUF2981   Protein of unknown function (DUF2981)


Domain annotation for each model (and alignments):
>> SKG6  Transmembrane alpha-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   2.4   5.7e-08   0.00026       9      35 ..       5      29 ..       2      33 .. 0.87
   2 ?   -3.4   0.5       1.5   6.8e+03       4      11 ..      69      76 ..      69      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 5.7e-08
        SKG6  9 tvaIavaVaVPVaViiivLlailifvr 35
                +va+++aV++P+aV   v++a ++++r
  CCD25327.1  5 SVAVGCAVGIPIAV--GVFIASFFWWR 29
                79***********8..56789999888 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.5
        SKG6  4 ssnsntva 11
                +sn+ntv+
  CCD25327.1 69 KSNTNTVT 76
                67999998 PP

>> DUF2681  Protein of unknown function (DUF2681)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00015      0.66       8      41 ..      12      46 ..       5      54 .. 0.78
   2 ?   -1.8   0.2      0.98   4.4e+03      58      75 ..     289     306 ..     249     312 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00015
     DUF2681  8 vgliaavlll.vaylswqlkkarkknaklqaekqq 41
                vg+ +av ++ + +++w+l++  +k +++ +e ++
  CCD25327.1 12 VGIPIAVGVFiASFFWWRLQRRFRKEEEMDQELER 46
                677666666515699****9999******999886 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.98
     DUF2681  58 vkqkneentrrlsrdsvd 75 
                 ++q+++e+ +  +  ++d
  CCD25327.1 289 KSQRQREERQINQHIDID 306
                 344444444444444555 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.1e-05      0.32      19      61 ..       4      46 ..       2      48 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.1e-05
    LapA_dom 19 LsllllvafgiGallgwllslwsylrlrrelrrlkkkikklek 61
                +s+ +  a+gi + +g++++ ++++rl+r+ r+ ++  ++le+
  CCD25327.1  4 VSVAVGCAVGIPIAVGVFIASFFWWRLQRRFRKEEEMDQELER 46
                7899999*************************99887777776 PP

>> DUF2981  Protein of unknown function (DUF2981)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   1.2   8.2e-05      0.37     136     250 ..      59     178 ..      21     182 .. 0.57
   2 ?    2.1   2.3      0.03   1.4e+02     100     165 ..     250     323 ..     196     365 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.2e-05
     DUF2981 136 klrvp.qneespikqhvrsdvnspantaelatidaalrdlekakkliretatkv...pvgaasskipkea.tlPetkekevkasslpaaaeepasnsed 229
                 +l +  qn+ +  +++v++d+++ +n+ +  + +a+ r+  k k ++    +k    +  + s+   +++ t P +++++ ++ + + +a  ++s  ++
  CCD25327.1  59 NLASLqQNDPKSNTNTVTNDISTDQNEGSDNSDTAQPRNTRKSKYFVPAYRRKInsmSIPNPSVAAQQHTsTSP-HNTNKFTSIQDSSTASFDSSFPTN 156
                 23222133333344889999999999999999999999999999999654433300022333333333330334.444444444444444444444455 PP

     DUF2981 230 akdeslydr.lPlvPhlgeteG 250
                 +++ s+yd+ +P++  +++  G
  CCD25327.1 157 QRKISVYDQmIPIMSGINDSKG 178
                 6666777753799999998887 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.03
     DUF2981 100 qkseaflrkrklpddkkllpddiskastdennlpd........aklrvpqneespikqhvrsdvnspa......ntaela 165
                 q +++f ++++++   +  +      s+++ +lp+        ++ ++ q+ee  i+qh+  d ++ +      n++++ 
  CCD25327.1 250 QSNNSFHTRDNSSLTTTQSK------SNLNLTLPEkpienvfdTPKSQRQREERQINQHIDIDDSVTSslrkddNSSSGN 323
                 33333333333331111111......111222333333322225555568899999999966554444233332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1217  (0.0678789); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2653.81
//
Query:       CCD25328.1  [L=966]
Description: hypothetical protein NDAI_0E05110, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-34  119.4   3.5    3.5e-34  117.8   3.5    1.9  1  Sir1      Regulatory protein Sir1
    9.7e-07   28.7   0.0    1.1e-05   25.2   0.0    2.3  2  DEAD      DEAD/DEAH box helicase
  ------ inclusion threshold ------
       0.16   12.3   0.0       0.78   10.0   0.0    2.1  1  AAA_22    AAA domain


Domain annotation for each model (and alignments):
>> Sir1  Regulatory protein Sir1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.8   3.5   5.9e-38   3.5e-34       1     120 []       3     128 ..       3     128 .. 0.99

  Alignments for each domain:
  == domain 1  score: 117.8 bits;  conditional E-value: 5.9e-38
        Sir1   1 kisdryavidgFlVdtekk.....kkiinpktkklkkltkeerekleklklvdldelkk.ysksdlipvdskeLFelveteerefyetedgliivnkrt 93 
                 +is+++++i gF+V ++k+     +kii++ tk++k ++++ere+l+ + lvd+de+++ +sk+dlip+++keLF++++t e+++y  edg++ivn+rt
  CCD25328.1   3 TISENVVLIKGFIVLKSKDkqgveTKIIRNLTKTSKFFSTWERELLSIQSLVDIDEYQTtHSKCDLIPMPCKELFDYCTTVEKNCYVSEDGYQIVNART 101
                 69************************************************************************************************* PP

        Sir1  94 kkkkrkesievrvipirlkkkkvkYLy 120
                 +k++++ ++++ vip+++k+k++kY+y
  CCD25328.1 102 PKRFQQLAQKYVVIPLYCKHKRTKYFY 128
                 *************************98 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.089   5.3e+02      51      72 ..     185     206 ..     161     218 .. 0.82
   2 !   25.2   0.0   1.9e-09   1.1e-05       8     169 ..     794     954 ..     790     959 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.089
                 EEEESSHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  51 livePtreLaeqtlnnlkkfkk 72 
                  ++e t+eL  q++++++++ +
  CCD25328.1 185 QFIESTHELFLQIYSTVRQRYH 206
                 57999************99865 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 1.9e-09
                 HHHHHTTCEEE.EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHH.HHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEE CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   8 iplilgggdvl.vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLae.qtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgt 104
                 +++ l+g +++ ++a  G GKT+ f+ip+++  y   ++++  +l+ +P    +  ++  +l++++ ++++   l+++g a  ++++     +d++vgt
  CCD25328.1 794 VEIYLSGTQIIpIQALPGFGKTALFQIPLVALSYG--EQKTVFILCFVPYVCFCLsNMKLRLSSSGINCGILKDLFVNGPAV-EEKNL---FCDVYVGT 886
                 56677777777799****************99986..899999******999875156667777777777655677777666.33333...49****** PP

                 HHHHHH.HH....HCTSSHCTTE..EEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxxx.xx....xxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 105 pgrldd.ll....stgklnlsqv..rflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                    l +  +    ++ +  ++++   ++V+DE ++l  + +++ +  r++ +++      +l  +v+v++ T+
  CCD25328.1 887 FNDLGSeNFvrlvNNWYNIYQDCilGMIVIDEFHNLETEqSYRGQSFRLIPEIN-----FNLAWKVVVVTGTA 954
                 *66666322344355553377765588*********988688888888777773.....33444577777775 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00013      0.78      44     106 ..     867     924 ..     798     943 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00013
      AAA_22  44 fvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrse 106
                 fv+ p+ ++   ++   +  +++ +++   +  +l++  ++  +++   ++++iDE+++l   
  CCD25328.1 867 FVNGPAVEEKNLFCDVYVGTFNDLGSE---NFVRLVNNWYNIYQDCIL-GMIVIDEFHNLE-T 924
                 555555555555666666666655555...777777888888888888.***********4.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 6398.46
//
Query:       CCD25329.1  [L=353]
Description: hypothetical protein NDAI_0F00100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      7e-14   51.9   0.0    7.3e-13   48.6   0.0    2.3  2  GST_N_2   Glutathione S-transferase, N-terminal domain
    2.5e-05   24.2   0.0    5.5e-05   23.1   0.0    1.6  1  GST_C_2   Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
      0.062   13.7   0.0       0.26   11.7   0.0    2.0  2  GST_N_3   Glutathione S-transferase, N-terminal domain


Domain annotation for each model (and alignments):
>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   1.2e-16   7.3e-13       2      69 ..      35     168 ..      34     169 .. 0.94
   2 ?    0.5   0.0      0.12   7.5e+02      28      47 ..     308     343 ..     265     344 .. 0.75

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 1.2e-16
                 -HHHHHHHHHHHHCT--EEEEEE.H...-TTSHHHHH.............................................................. CS
     GST_N_2   2 CPwahRvlialalkglediisvv.vlepkgfekseef.............................................................. 37 
                 CP+a+R++i++alk+l+d+i v+ v++  ++++++ +                                                              
  CCD25329.1  35 CPFAQRIWITRALKNLTDVIGVSvVHWKLDEKTGWKLlnagetklgenafkidggilssqddtssplgdldesssrlfkdgtfdphygitqikelydmt 133
                 **********************779*********999************************************************************** PP

                 .HHHCTTTSSSEEE-CTTE..EEESHHHHHHHHHH CS
     GST_N_2  38 .prlnprgtVPvLwdkdgq..vineSseIlrylet 69 
                  +++++ +  P+Lwd +++  v+n   +I  +l++
  CCD25329.1 134 dKQYKGEFLWPILWDLKTKtiVNNNWDQIPAILNS 168
                 ***************86666899999988888876 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.12
                 .-TTSHHHHH.................HHHCTTTSSS CS
     GST_N_2  28 pkgfekseef.................prlnprgtVP 47 
                 + +++ +  f                 +++np+g VP
  CCD25329.1 308 NLYWNYP-AFgqttnfnhikllythamKNINPNGIVP 343
                 5555542.5555556666666666666999****999 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   9.2e-09   5.5e-05       9      68 ..     223     307 ..     208     308 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 9.2e-09
                 HHCCHCHHHCTTT--...................-SS.CTTCS--HHHHHHHHHHHHHHHHHHS-......---TT-HHHHHHHH CS
     GST_C_2   9 eqldaaldaleahLa...................dspflfGdqptlaDialapflvrlraagpgf......direaypnlraWle 68 
                  ++++++d++e+ L+                   ++ flfG+q+t  Di+l+++ +r + ++  +        r++y  ++ W++
  CCD25329.1 223 INFFKDMDKIENKLRevhdtlakeygasneeeilKRFFLFGNQITESDIRLFVTMIRYDSIYAVHfklnyrLVRSDYYYIHLWMR 307
                 6788888888888887888888888877777775555**********************99753346677666688888888876 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.3e-05      0.26       1      24 [.      29      52 ..      29      69 .. 0.81
   2 ?   -1.8   0.0      0.72   4.3e+03      37      48 ..     332     343 ..     322     344 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 4.3e-05
                EES-TTSHHHHHHHHHHHHHT--E CS
     GST_N_3  1 LygfpaSpyarrvrlaLnekglpv 24
                Ly + ++p+a+r++++  +k+l  
  CCD25329.1 29 LYLSAGCPFAQRIWITRALKNLTD 52
                88899****************964 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.72
                 HHHHH-TT--SS CS
     GST_N_3  37 ellaknplgkvP 48 
                 +++++np+g vP
  CCD25329.1 332 AMKNINPNGIVP 343
                 78999****999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2613.01
//
Query:       CCD25330.1  [L=508]
Description: hypothetical protein NDAI_0F00110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-09   37.8  11.0    1.5e-09   37.8  11.0    2.4  2  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
      0.098   12.3   0.0       0.19   11.4   0.0    1.4  1  DUF3445   Protein of unknown function (DUF3445)


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8  11.0   1.6e-13   1.5e-09       2      39 ..      19      56 ..      18      57 .. 0.96
   2 ?   -3.9   3.8       1.8   1.6e+04      17      17 ..     438     438 ..     424     450 .. 0.48

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 1.6e-13
                S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCE CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskr 39
                +C++Cr +KvKCd ++P+C +Ck+l+ eC  y+ + ++
  CCD25330.1 19 GCWTCRARKVKCDTQRPKCCRCKQLGIECGGYDIKLQW 56
                7********************************99987 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.8
                 S CS
     Zn_clus  17 k 17 
                 +
  CCD25330.1 438 H 438
                 1 PP

>> DUF3445  Protein of unknown function (DUF3445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.1e-05      0.19      47     126 ..     321     434 ..     297     439 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.1e-05
     DUF3445  47 kElleelveyLparYPqlFel......skkkt.lenkvtgetfel...........eplevlarlvqeDllillendge.................... 107
                  E le l++ L ++ P+  +l          t + n++ +    +           +++e++ + v++D++i l +d+e                    
  CCD25330.1 321 DESLEALIHTLFNKQPSPIDLsdpnvsY---TrVPNNLDDIW--InapdqlskmprTAMEIVHSDVKDDFAIELTSDNEyymripensltvhgltrlll 414
                 5778888888888888888885433220...22444443332..1335666655656*******************99956666666666666666666 PP

     DUF3445 108 .yyleAgvvcfpagwdlrek 126
                  ++++ ++ ++p gw+l++ 
  CCD25330.1 415 nHFMDTVADLMPCGWCLKKS 434
                 66666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3835.73
//
Query:       CCD25331.1  [L=330]
Description: hypothetical protein NDAI_0F00120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-58  196.9   0.3    5.2e-58  196.7   0.3    1.0  1  Fungal_trans_2  Fungal specific transcription factor domain


Domain annotation for each model (and alignments):
>> Fungal_trans_2  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   0.3   2.9e-62   5.2e-58     134     384 .]       3     328 ..       1     328 [. 0.91

  Alignments for each domain:
  == domain 1  score: 196.7 bits;  conditional E-value: 2.9e-62
  Fungal_trans_2 134 sssslsskarfllrifayldilssttlg................................................................... 161
                     ++++ls+ka+ l+rif++l++++++t                                                                     
      CCD25331.1   3 TRPKLSEKAKALHRIFSFLKLIQDSTALdrvkeeeivyrcsadnvrmsseklgrnydgstvtagtykefidenngritinflptsetngsilsha 97 
                     6889***********************************************************************************99666666 PP

  Fungal_trans_2 162 ...rgpsfpseeyekllen...kkeesdsgldplmGcsnslilliseisrLarekrsarkdseleplsileeaseleqrllswkprssdlepdld 250
                         +p f +  +e+ + +   + e +  g++ l+G++nsli+l+s+++r++r+  +++  + ++p+++   + ++e++ll+wkp+++ + ++++
      CCD25331.1  98 nehIQPMFTNFLTENYYYTgakPLEADILGTEALYGLPNSLIHLFSDCVRIVRHTAYYKTNNLSTPREFTTVSLNFEKKLLNWKPEWNYYADQDS 192
                     665555555555555555599889999999**********************************************************9998888 PP

  Fungal_trans_2 251 eterassls..kdltelfrlaaliylyrlvlglppsspevqelvkkllellellp....sspvaiasLlWplFiaGceavdeddRdfvrrrleel 339
                      t+ +++ +  +++t++f++ ++iy++++ ++l+ +   +q+ vkk+le+l+l+     +++v++ +L+W++F+aGc++++ + ++++++++ ++
      CCD25331.1 193 KTFINETVEavYHHTMSFYYGLIIYYFTMGRHLNND--FLQSYVKKVLEHLKLVTrlseTDDVKVLPLIWQGFVAGCASTSLEVQQEFKDWVSKF 285
                     888888888**************************9..66666666666666665555477779******************************* PP

  Fungal_trans_2 340 eqsrlgnvrrarqvleevWrrrddgeekidWrdvmekkgwellla 384
                      q+++g++++arq++ evWrrrd+++e++dW++v+  k+w+++l+
      CCD25331.1 286 TQHGMGSYWKARQLMYEVWRRRDQNCEGDDWYSVC--KDWGMNLM 328
                     ***********************************..7*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2627.50
//
Query:       CCD25332.1  [L=278]
Description: hypothetical protein NDAI_0F00130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.3e-20   72.1  16.8    1.5e-19   69.5   2.8    3.3  3  PQ-loop          PQ loop repeat
  ------ inclusion threshold ------
        4.7    6.7  24.0       0.89    9.1  11.1    2.2  3  ABC2_membrane_5  ABC-2 family transporter protein


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   2.8   1.7e-23   1.5e-19       2      57 ..       8      63 ..       7      67 .. 0.95
   2 ?   -3.7   0.1       1.2   1.1e+04       9      14 ..     104     109 ..      98     117 .. 0.51
   3 !   11.1   1.9   2.9e-05      0.26       4      52 ..     134     183 ..     133     191 .. 0.85

  Alignments for each domain:
  == domain 1  score: 69.5 bits;  conditional E-value: 1.7e-23
     PQ-loop  2 seilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngf 57
                s++lg++++v+w++++iPQi+ N+krk ++G+ + +++lw++++i++ +y++++++
  CCD25332.1  8 STALGTVATVCWCIQLIPQIYYNWKRKDCTGFPPIMMFLWVVSGIPFGIYFCISRA 63
                789*************************************************9876 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.2
     PQ-loop   9 slvlwl 14 
                 ++++++
  CCD25332.1 104 GIAISA 109
                 333332 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 2.9e-05
     PQ-loop   4 ilgyislvlwlvsyiPQiikNykr.kSteGlSilflllwllGdilsllyl 52 
                 i+g+i+++l +v ++P + +  kr   ++G+++lfl+ + lG +ls+ + 
  CCD25332.1 134 IFGIIATILLAVGLLPPYFELAKRnGRVVGINFLFLFVDSLGAWLSICSV 183
                 7899999999999999999877652778*****************99876 PP

>> ABC2_membrane_5  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   5.0     0.013   1.2e+02     122     190 ..      11      83 ..       3      94 .. 0.56
   2 ?    0.3  10.5     0.048   4.3e+02      89     160 ..      42     112 ..      36     121 .. 0.83
   3 ?    9.1  11.1   9.9e-05      0.89      91     201 ..     102     214 ..      98     218 .. 0.74

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.013
  ABC2_membrane_5 122 iglvialiflaivlP.lyfkfgvekgri...vliiiifg..iifllvaifslsklelslidlsnyilliillvii 190
                      +g v ++ +++ ++P +y+ ++ +  +    ++++++++  i f+++ ++s+ +l+l+++    +++++i++  i
       CCD25332.1  11 LGTVATVCWCIQLIPqIYYNWKRKDCTGfppIMMFLWVVsgIPFGIYFCISRATLILQIQPHLFMFFCCISF--I 83 
                      555555666666666334444444443245544444443447778888888888888866665555555443..3 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.048
  ABC2_membrane_5  89 liliailitlllliiavlikgnvtisevllsiliglvialiflaivlPlyfkfgvekgrivliiiifgiifl 160
                      ++++ ++++ + + i+  i++   i ++   ++++++ +++++ +++P + k+ v+k+ ++li i + +++l
       CCD25332.1  42 IMMFLWVVSGIPFGIYFCISRATLILQIQPHLFMFFCCISFIQTCYYPPV-KLNVWKIALILIGIAISAVGL 112
                      57788888888888888899998888888999999999999999999985.999999999999988887765 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 9.9e-05
  ABC2_membrane_5  91 liailitlllliiavlikgn..vtisevllsiliglvialiflaivlPlyfkfgvekgrivliiiifgiifllvaifslsklelslidlsnyil 182
                      li+i i+++ l ++ ++  +  ++    + ++++g++ ++++ + +lP yf +  ++gr+v i   f+++  l a +s+ ++ l + d+  +il
       CCD25332.1 102 LIGIAISAVGLEVGFVLGLRplYDRGIKWPDLIFGIIATILLAVGLLPPYFELAKRNGRVVGINFLFLFVDSLGAWLSICSVALGNMDIMGIIL 195
                      34444443333333332222335555569999***************************999999999888999*******************9 PP

  ABC2_membrane_5 183 liillviillliivSyfiS 201
                      + +++++ l +++  ++++
       CCD25332.1 196 YAVIAAMELGIFLSQFIWC 214
                      9999988876666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2034.18
//
Query:       CCD25333.1  [L=378]
Description: hypothetical protein NDAI_0F00140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-59  199.4   0.0    1.4e-58  198.2   0.0    1.5  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    5.3e-05   22.4   0.0     0.0001   21.4   0.0    1.5  2  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
      0.041   14.3   1.2      0.075   13.4   1.2    1.4  1  SYF2             SYF2 splicing factor


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.2   0.0   2.4e-62   1.4e-58       2     382 .]       6     373 ..       5     373 .. 0.87

  Alignments for each domain:
  == domain 1  score: 198.2 bits;  conditional E-value: 2.4e-62
                      HHHHHTTTTCHTTTTBSS--B---SBBBESSHHHH........CTTCSSS-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTT CS
  Cys_Met_Meta_PP   2 Tllvhagqekdeqtgavavpiyltstykfkdvdea........fageekgyeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailal 87 
                      T+l+h + + + + + va+pi  ++t++f++ +           +  +++ +Y+R   p++s +++ +++L gg+ a++++sG +A + a+  +
       CCD25333.1   6 TALIHGDDKLN-RVTDVAPPINVSTTFRFDNNNLIpanevkdfLQSIDENPVYARESHPNSSRVQAVLSDLLGGH-AVIYNSGCSAFH-AL--M 94 
                      88999999987.7999**************7766577777774444555589*******************9996.789********4.44..3 PP

                      S-TTEEEEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT-EEEEEGTTTHTTT CS
  Cys_Met_Meta_PP  88 lkaGdeivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkagvlvvvDntfaspll 181
                      ++   +   +d  Y g +++ + ++++ g+e +  d   +ee+++      ++v+lEtp np+    Die++ak ++++g+++ +D+t+a p l
       CCD25333.1  95 CHYNPKRFFMDGGYFGVHAIADLITRNYGLEQHSLDE--IEEFAQ----AGDIVHLETPLNPFGTSSDIEALAKRVHDKGAILSIDATLAPPPL 182
                      55556677888899999**************999887..566555....578****************************************** PP

                      S-GGGGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTS..... CS
  Cys_Met_Meta_PP 182 qrplklgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekh..... 270
                      q + k+gaDi++hSaTKy gGhsd++aGv+vvk+ke+  + +     +lG  +   +++lllr l+T ++R+ ++++n  kv  +L+++     
       CCD25333.1 183 QDAWKFGADIILHSATKYFGGHSDLLAGVLVVKTKEQAYELI-EDRIHLGTNIGNLESYLLLRSLRTYEMRIMKQENNTRKVITYLNENkskfn 275
                      **********************************66666655.56689***************************************9954332 PP

                      TTEEEEE-TTSTTSTTHHHHHHHSSSG-S.EEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEE CS
  Cys_Met_Meta_PP 271 pkvekvyYpglpshpqhelakkqlkgagg.vlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRl 363
                      +  +k+y+ +l+   + ++++kql+g    v++ +l+s   + k++   lk f++a+slGgveslie  a+            ++++ + liR+
       CCD25333.1 276 KVLNKIYHSSLQ---DDDFVQKQLSGLYCpVFAITLHSI-DQCKELPLYLKYFQHATSLGGVESLIEWRAM-----------SDSDIDQCLIRV 354
                      234666666655...55899******9778999999988.779***********************98764...........45678889**** PP

                      E--SS-HHHHHHHHHHHHH CS
  Cys_Met_Meta_PP 364 svGiEdvdDliaDlkqale 382
                      s+G+E++dDli+Dl++al+
       CCD25333.1 355 SIGCENADDLIKDLENALQ 373
                      *****************95 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.7e-08    0.0001     138     205 ..     137     203 ..     119     269 .. 0.82
   2 ?   -3.0   0.0      0.45   2.7e+03     353     369 ..     350     366 ..     333     368 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.7e-08
                  TTEEEEEEESBETTTTEB--HHHHHHHHHHTT-EEEEE-TTTTTTS---HHHHTESEEEEETTTTTSS CS
  Aminotran_5 138 ektklvaithvsnvtGtiqpveeigklakkkgalvlvDaaqavghipidvkklgvDflafsghKllgP 205
                  +  ++v++    n  Gt  ++e+++k++++kga++ +Da+ a +    d  k+g+D++  s+ K++g 
   CCD25333.1 137 QAGDIVHLETPLNPFGTSSDIEALAKRVHDKGAILSIDATLAPPPL-QDAWKFGADIILHSATKYFGG 203
                  5567899999999*************************98777666.599**************9985 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.45
                  -EEEEE--TTS-HHHHH CS
  Aminotran_5 353 gtvRaSlyiynteeevd 369
                  + +R+S+++ n  + ++
   CCD25333.1 350 CLIRVSIGCENADDLIK 366
                  789******99887766 PP

>> SYF2  SYF2 splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.2   1.3e-05     0.075     120     149 ..     255     284 ..     232     288 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.3e-05
        SYF2 120 rrkedeegdvtYINerNkkFNkklerfYdk 149
                 ++++++ + +tY Ne+  kFNk l++ Y +
  CCD25333.1 255 KQENNTRKVITYLNENKSKFNKVLNKIYHS 284
                 556679999*******************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       790  (0.0440627); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2698.42
//
Query:       CCD25334.1  [L=686]
Description: hypothetical protein NDAI_0F00150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-45  154.7  18.2    2.7e-45  154.7  18.2    2.2  2  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.7  18.2   1.5e-49   2.7e-45       5     325 ..      16     319 ..      12     321 .. 0.89
   2 ?   -5.3   5.4      0.77   1.4e+04      34      49 ..     393     408 ..     359     463 .. 0.47

  Alignments for each domain:
  == domain 1  score: 154.7 bits;  conditional E-value: 1.5e-49
  Hyphal_reg_CWP   5 ialalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitsts.sllalsvtlasatgsieNnGiivfnseeslta 98 
                      +lal+l+is n +  g+ +++ + +++ +g+++s+++ ++  ++gdls+  +g++++ s + ++ +++v+  ++ gs+ N+G iv+n + s + 
      CCD25334.1  16 PNLALGLDISRNVTLAGSSSYQ-DGVSVAKGSTFSLVDGSSADISGDLSI--EGTICLGSYQdTSSNMDVS--VSAGSVSNSGSIVINPKGSAK- 104
                     57999****************9.**************************9..8999999887355566666..899************987765. PP

  Hyphal_reg_CWP  99 ssyklvgasFeNnGelylagsgsvvastmeits.nsweNnGlivfyqsqrssgtvklgaalgsitNdGqIclknqayqqttsiqGsGCitvgeds 192
                       +++  +sF+N G  y+a  ++  ++t +  + ++++N+G ++f +    sg ++++++++ i+N+G+  +  ++++ +t i+G+GC+++++++
      CCD25334.1 105 --LDF--GSFQNLG--YIAITSG-TQDTETFSAqQNFNNQGQMYFGT----SGPLEIEGPSSGIENSGTLAFVGNTITFKTGITGDGCMSLQQST 188
                     ..444..9******..7776665.56666777779**********85....68899*************************************** PP

  Hyphal_reg_CWP 193 siyisnsllsissdqtiYLadsssslvvesvskpqtfkvagFGngnkigltlpllgl..vlssisYdsdtgiLtlralllsqkFnIGtGYdsskF 285
                     ++   n  ++ s + ti++ d++s+  + + ++++t +++gFG+ n+i l+++ +++  ++++ sYd +tgiLt++    + k++IGtGYdss F
      CCD25334.1 189 TL---NVDMDSSLEPTIWFGDDNSNTLILNGKQQNTPTIKGFGGSNTIVLNITTASNstSTPALSYDGNTGILTVSG-ASTVKLDIGTGYDSSSF 279
                     99...5567999****************99998899*****************99999888**************94.5679************* PP

  Hyphal_reg_CWP 286 eivtdagagllsvqngavtYngpvPsrslPsaCqaCksvp 325
                     +++ ++g + +   +  v Yn + P++++Ps+Cq+  ++p
      CCD25334.1 280 TVSGSSGINGVPDGTAVVGYNSNAPDSNQPSSCQTVSETP 319
                     *888877665555567789***************877766 PP

  == domain 2  score: -5.3 bits;  conditional E-value: 0.77
  Hyphal_reg_CWP  34 sgaylsiinnalsafv 49 
                     s+++  ii+ ++s+++
      CCD25334.1 393 SSSSSIIIEPSSSSIE 408
                     2222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1118  (0.0623571); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 4592.96
//
Query:       CCD25335.1  [L=1349]
Description: hypothetical protein NDAI_0F00160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-69  234.3  12.0    2.3e-69  234.3  12.0    2.7  2  FH2        Formin Homology 2 Domain
    8.2e-10   38.5   0.8    8.2e-10   38.5   0.8    3.0  4  Drf_GBD    Diaphanous GTPase-binding Domain
    5.1e-05   23.0   0.9    5.1e-05   23.0   0.9    3.2  2  Drf_FH3    Diaphanous FH3 Domain
  ------ inclusion threshold ------
       0.67   10.1   7.2        3.3    7.9   2.3    3.4  2  TetR_C_23  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   6.9      0.75   3.4e+03     269     336 ..     510     581 ..     453     611 .. 0.63
   2 !  234.3  12.0   5.1e-73   2.3e-69       4     371 ..     852    1239 ..     849    1240 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.75
                 THHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCT....TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHH CS
         FH2 269 nvkkaakvnleslekevkklekglkklekelessek....keepsdkflevlkeflkeaeeklkkleeelke 336
                 +++k a  +l++lek+v+ l+++++ l++  +  +     + ++ ++++e+  +  +e + k kkle++ ++
  CCD25335.1 510 EITKRAMSELKELEKTVQSLNEEIDRLREINNMDKGdvleELKQANELIESRDRENEELTLKQKKLEDQVRK 581
                 577778888888888888888888888765555554533333333333333333333333344444444444 PP

  == domain 2  score: 234.3 bits;  conditional E-value: 5.1e-73
                  X---SS-B------EESSGGCTTSCCCCTCCHHHHC.....TSHHHHHHHHTBSC--HCCH......HCSCCTTCCESSS-HHHHHHHHHHHHHH.T CS
         FH2    4 kikpkkkLkplhWdkvkpsqdrstvWdklkeesfek.....eldlseleelFsakekkkkkkksekskkskkkkkkvklLdpkrsqniaIlLkkl.k 94  
                  + + kkkLk++hWdk+++ +++  +Wd+ + ++ +       + +++++ +Fs +    k k   + + + +++k +++L+++ sq++aI+L+ + +
  CCD25335.1  852 NQQSKKKLKQIHWDKIENVKNT--LWDHADGRQDTIlelehAGIFEKVQGMFSVQDLVVKPK---RAVNVRESNKLLSFLSRDFSQQLAINLHIFaQ 943 
                  5789*************99997..*******998889999999***********99986665...59999*************************** PP

                  S-HHHHHHHHHTTTTCCCT.............HHHHHHHH.HHCGGHHHHHHH.HCTCTSGTTB-HHH.HHHHHHTT.STTHHHHHHHHHHHHTHHH CS
         FH2   95 ltaeeiveaileldeeald.............lellenLl.kmaPtkeelkkl.keykgevseLseae.qFllelvk.iprlekRleallfkstfee 174 
                  lt +e+ +++l++d+++++             +++  + +  + P++ ++    ++  ++++eL +a+  Fl+  ++ + ++ +R ++ll+ st+e+
  CCD25335.1  944 LTEKEVLQKVLACDNDTIQnvsvleffckdemVNIGSARIrHFTPYSADYLNAsEQPAKNPDELERADkLFLYLPFNlRRYWAERSQCLLVISTYER 1040
                  ****************************98885555555559*******99997889999************************************* PP

                  HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-S.TTTSBHHHHHHHHHHTTSGGGGGHHHHTTTH CS
         FH2  175 eveelkrslealeaaseeLknskkfkklLeliLalGNymNdgtrrgqAkGFkLssLlkLsdvKst.dnkttLLHylvkiireklpevldfsseLknv 270 
                  e+ ++  +l+++++a + ++ s+kfk +L +i +lGNymN     +++ G +L+sL+kL+ +Ks+ +++ ++LH+++k++r ++p+v +f ++L++v
  CCD25335.1 1041 EYYDMLYNLQKIDDALQNIRHSEKFKTFLYIIIELGNYMNT----KAVEGIRLNSLTKLAFIKSNdNKNFSFLHFVEKMLRIHYPDVYGFINDLNKV 1133
                  *****************************************....89******************56678*************************** PP

                  HHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCT....TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT.CCHHHHHHH CS
         FH2  271 kkaakvnleslekevkklekglkklekelessek....keepsdkflevlkeflkeaeeklkkleeelkeakelvkelveYfgedkk.evspeeffk 362 
                  +++ k+ +++++ ++++++++++ +  ++++++     + +p+d++l ++k  +++a++k + l+++ k +++ + + + Y+ged++ + ++  ff+
  CCD25335.1 1134 EDLGKITIDQVQLQCEEYCTKIERIAHSVTKGKLsdptQLHPDDQILRKVKYKVTRAKTKSELLQAQFKLTNNDFRKSMLYYGEDPDdTDNKINFFN 1230
                  *************************************9*************************************************888999**** PP

                  HHHHHHHHH CS
         FH2  363 ilreFlkef 371 
                  ++ eF + f
  CCD25335.1 1231 QFVEFSSLF 1239
                  *****9887 PP

>> Drf_GBD  Diaphanous GTPase-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.8   1.8e-13   8.2e-10       4     186 ..     114     288 ..     111     290 .. 0.79
   2 ?   -1.2   1.2      0.29   1.3e+03       8      34 ..     494     520 ..     435     537 .. 0.62
   3 ?   -2.6   2.2      0.77   3.5e+03       9      38 ..     495     524 ..     482     607 .. 0.75
   4 ?   -3.4   0.3       1.4   6.1e+03      35      77 ..    1256    1294 ..    1235    1318 .. 0.62

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 1.8e-13
     Drf_GBD   4 pdeeeidklFeelleel.nlpeekreallalpiekKwqlvvqdkkkkakkeeklsksksksneeespesyvkklkddslke....kqlesLrVaLrtqp 97 
                 p+e++id+lF+++le+       ++++l   ++++Kw+l+++  +k+++   +++++++ +      + + ++l    ++e      l +L+  Lr   
  CCD25335.1 114 PSEDKIDALFNKILEDGtFFWGSAQKNLQGISYKRKWELICKMDEKSNSAL-NVEDKNTLNA---VDIQFLEQLDVLLSDEkklsSSLYNLERILRHG- 207
                 79**************977899*******************9988777777.4444444444...444555555544444422257788888888865. PP

     Drf_GBD  98 lsWvkrFieleGlvaLlnvLskinekkaeeeedlkkeyeiikClKalmNnkvGldavlahksvikllaqsldserlktrk..lvlelLtal 186
                  s v +F++++ l +L+n+  +i     ++     ++y  ++C+K lmN+++ + ++l ++s ++ +++ + ++ ++ r+  ++++lL  l
  CCD25335.1 208 -SSVSKFLDHNHLDTLTNIIPNIS----QG-----CQYVFLRCFKTLMNTEIMRSKILDNPSLVEYFCKIISTRDISLRIklQASDLLLLL 288
                 .679*******9999999988775....45.....7888**********************************987655422788998777 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.29
     Drf_GBD   8 eidklFeelleelnlpeekreallalp 34 
                   +++  +l++ l  +e  ++a+ +l+
  CCD25335.1 494 LFQEAVTKLMDSLHSNEITKRAMSELK 520
                 222223333333344444444444443 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.77
     Drf_GBD   9 idklFeelleelnlpeekreallalpiekK 38 
                  +++  +l++ l  +e  ++a+ +l+  +K
  CCD25335.1 495 FQEAVTKLMDSLHSNEITKRAMSELKELEK 524
                 444455666666777777888877765555 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 1.4
     Drf_GBD   35 iekKwqlvvqdkkkkakkeeklsksksksneeespesyvkklk 77  
                  +e+++++ +  +kk++ ++      +  s+e  s++s+  +l+
  CCD25335.1 1256 YEQRKKIAELRNKKNERND----TVHDTSEEIDSVHSLLAQLR 1294
                  4555555555555444444....44455555555555555554 PP

>> Drf_FH3  Diaphanous FH3 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.9   1.1e-08   5.1e-05      37     190 ..     343     497 ..     323     502 .. 0.81
   2 ?   -3.3   5.8       1.3   5.6e+03      75     129 ..     514     570 ..     502     583 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 1.1e-08
                 -HHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHCTTHHHHHHHHCTSCSHHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXXXX CS
     Drf_FH3  37 lveykvatmllInalvnspedlqfRlhLRseflalGLdkiidklreleneeLddqlqafeeerneDeeelleraedktvdlddpeelfellknkvkdte 135
                 l +y ++ + lIn l+++ + + +   +  e++++ L++ii   ++l++  +++q++  +++++  +++  +++ ++ ++ + + ++  l+ +k+kdt+
  CCD25335.1 343 LCDYFCSNLFLINSLIQGFPTIPLKATILEEMRKCDLHQIIYLSEKLDSTSIQEQIKEIKTQEETIYSRGYGSNHMNLPEVSYAPDIELLI-TKSKDTP 440
                 679************************************************************9777777777777777777777776555.9999999 PP

                 XXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     Drf_FH3 136 aepyllsilqhllli..rddeeekesylklleelvsqivlqrtkidpkkderkslev 190
                  e+ l  +l  l  +  +++++e  +++k  ++lv+++  + + ++++  +++ ++ 
  CCD25335.1 441 VEDSLGKLLATLSKAlnSKTYSETIKIYKSTNSLVTYLMDNFQNNQKSVASETLFQE 497
                 999997777777666557888889999999998888876555544444455555555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.3
                 HHHHHHCTS..CSHHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXX CS
     Drf_FH3  75 kiidklrel..eneeLddqlqafeeerneDeeelleraedktvdlddpeelfellkn 129
                 +++ +l+el    + L++++++ +e  n D+ ++le +++ +  +++ ++  e+l+ 
  CCD25335.1 514 RAMSELKELekTVQSLNEEIDRLREINNMDKGDVLEELKQANELIESRDRENEELTL 570
                 66777777755678999*****************99999888777777776666644 PP

>> TetR_C_23  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.3   0.00073       3.3       6      73 ..     461     528 ..     458     530 .. 0.94
   2 ?    2.5   0.2     0.033   1.5e+02      27      68 ..    1222    1263 ..    1214    1269 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00073
   TetR_C_23   6 lftflevltanRsfvlqflkkaksplsnlsklselrkkfkefakelleegletkelkvrkflekklse 73 
                 +   +++ ++  s v++++++ +++++++++ + +++++++ +++l++++++++ + + k+lek+++ 
  CCD25335.1 461 YSETIKIYKSTNSLVTYLMDNFQNNQKSVASETLFQEAVTKLMDSLHSNEITKRAMSELKELEKTVQS 528
                 778899999*****************************************************999876 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.033
   TetR_C_23   27 aksplsnlsklselrkkfkefakelleegletkelkvrkfle 68  
                   +++ + ++++ e+++ f++ a+e +e++++++  ++rk+++
  CCD25335.1 1222 TDNKINFFNQFVEFSSLFRKCARENIEKEEADRAYEQRKKIA 1263
                  5677888999*************9999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2285  (0.127447); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.02u 0.29s 00:00:01.31 Elapsed: 00:00:00.45
# Mc/sec: 9041.58
//
Query:       CCD25336.1  [L=196]
Description: hypothetical protein NDAI_0F00170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-38  131.5   0.0    1.7e-38  130.9   0.0    1.2  1  Coa1      Cytochrome oxidase complex assembly protein 1


Domain annotation for each model (and alignments):
>> Coa1  Cytochrome oxidase complex assembly protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.0   9.7e-43   1.7e-38       4     117 .]      76     189 ..      73     189 .. 0.97

  Alignments for each domain:
  == domain 1  score: 130.9 bits;  conditional E-value: 9.7e-43
        Coa1   4 favfvvgvvvalayifnyektsssivrsvlyqlrrspevrelLGeeipfkssipwisGelntvkGkidlsfpvkGskg.eGtvyltaeResktepfeil 101
                 f+ f v+++++la++fnyekt+s+i++ +lyqlrrsp + elLGe+i+f++  pw+ G+ln+vkGkid++f++kG+kg +G+v+l a+R ++ e+f i+
  CCD25336.1  76 FIGFSVAITASLALLFNYEKTESPIISTSLYQLRRSPITTELLGENIEFAGLTPWVFGQLNPVKGKIDIKFYIKGDKGkTGVVKLVADRANRSEEFLIH 174
                 77899************************************************************************98******************** PP

        Coa1 102 efsvevddgkkidLld 117
                 e+sv+vd +k idLl+
  CCD25336.1 175 EWSVTVD-DKHIDLLE 189
                 *******.******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       378  (0.0210832); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1453.72
//
Query:       CCD25337.1  [L=73]
Description: hypothetical protein NDAI_0F00180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-27   95.7   0.0    1.2e-27   95.6   0.0    1.0  1  DUF1748   Fungal protein of unknown function (DUF1748)


Domain annotation for each model (and alignments):
>> DUF1748  Fungal protein of unknown function (DUF1748)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.0   6.8e-32   1.2e-27       1      69 []       4      72 ..       4      72 .. 0.99

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 6.8e-32
     DUF1748  1 lgrlthyafDavLvSvvlAgvkrttgltlnsdkitdkdikkwvdkYLgvGEwvmDqsvavmgsSswFer 69
                +g+ +h+++D+vLvS++lAg+kr+tgl++n   i++++++++++kYL++GE+v+D+sva +g+S++Fer
  CCD25337.1  4 FGKAVHVSIDLVLVSTCLAGIKRNTGLSPNLALIESQTAREYTRKYLRFGESVYDYSVASCGTSKYFER 72
                8*******************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                         8  (0.000446204); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 583.26
//
Query:       CCD25338.1  [L=2377]
Description: hypothetical protein NDAI_0F00190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.9e-176  588.3  12.1   1.9e-176  588.3  12.1    2.2  2  MOR2-PAG1_N    Cell morphogenesis N-terminal
      8e-87  291.3   2.6    9.7e-86  287.7   0.4    3.3  2  MOR2-PAG1_C    Cell morphogenesis C-terminal
    2.1e-24   85.4   9.0    3.7e-12   44.8   0.1    4.0  4  MOR2-PAG1_mid  Cell morphogenesis central region
     0.0027   17.8   0.2     0.0027   17.8   0.2    4.4  6  Cnd1           non-SMC mitotic condensation complex subunit 1
  ------ inclusion threshold ------
      0.075   12.9   5.6       0.24   11.2   5.6    1.8  1  MAT1           CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> MOR2-PAG1_N  Cell morphogenesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  588.3  12.1  5.4e-180  1.9e-176       1     551 []     411     955 ..     411     955 .. 0.96
   2 ?   -0.7   0.5      0.15   5.2e+02     303     380 ..    1153    1239 ..    1125    1315 .. 0.62

  Alignments for each domain:
  == domain 1  score: 588.3 bits;  conditional E-value: 5.4e-180
  MOR2-PAG1_N   1 eRkslvsiyilcrvLieilkqstkeslteelgekLeeivFkqlkkadpeslsssplrlanwnlfAelLGvlSeirFasVsdrFiaeLeklrkeaskel 98 
                  eRksl+siyilcrvL+ei+ q++ +s ++el++kLeeivF+qlk+++p s+sss ++++nwn fAelLG++Se++F sV+drFi++Lekl+k +s e+
   CCD25338.1 411 ERKSLISIYILCRVLMEIVIQTPGNS-DHELNDKLEEIVFTQLKTTNPLSISSSVIKSTNWNSFAELLGYMSEKKFVSVTDRFISDLEKLPKIISPEN 507
                  8**********************999.8*****************************************************************99*** PP

  MOR2-PAG1_N  99 eaklellirGmrylklkvypeeafeesadFlkslakffeeakgsevkhAyaellselLlpvaasataevnhpkwaeavellypraak.mskk.pkhwn 194
                  e+ ++lli Gmry+kl++yp+e+feesadF+ksl+kff+ +++ +++ Ay+e++++lLlp+a ++taevnhp+w+ea+++l++ +ak ++++ +k+w+
   CCD25338.1 508 EPPIHLLILGMRYIKLQNYPLEKFEESADFMKSLSKFFNISENLSIRLAYSEVINQLLLPLAGTLTAEVNHPTWVEAMTTLLHCSAKfLQSEhSKFWA 605
                  ***************************************************************************************877765888** PP

  MOR2-PAG1_N 195 aafpLvttlLCvspkefFlanWlsllesllsklKdk..stravalealsrllwvYlyRckeslntttkkLeeilkllfpkgk.rklitpddelleplv 289
                   +f+L++ +LC+sp+++F+++W sl++s+ +k+K+k  ++r++++++lsrl+wvYlyRc+e+ln+ttk+L+++l l+++k+k +++++p+ el++pl+
   CCD25338.1 606 EGFKLTVSILCASPPTLFTNQWISLIQSNSEKIKTKnmTERVFFARGLSRLIWVYLYRCTETLNNTTKTLTSLLPLYLNKKKkQSWLSPNLELINPLC 703
                  ************************************999***************************************88888*************** PP

  MOR2-PAG1_N 290 qiirfiaskhldfafkniifpllnaelfsssklenlepermiigirAflailsdlekkeqrPpfPtssdasekeedllsrpvgtsalsetkkeylaka 387
                  + ++ +++ h++f ++n i+pl+++++++++ len++ e+++++i+++  +l+   ++e rP+fP  +d++ +e +l+++ +++  ++e+ +++    
   CCD25338.1 704 DTLVSVGYLHPNFLIENAIIPLIRQSFNGAT-LENMNCEKLMLAINSYKGLLM---TTE-RPEFPG-IDNRVYELNLNKTLAEKFYQNEALSQN---- 791
                  ****************************999.********************9...777.9****9.699999999999999999999999999.... PP

  MOR2-PAG1_N 388 glkkyyeevskilgkililldqtvGrqlvldeklss..pktiaesfsf.rk.ddhaavd.ekqakleLlktaiealPrclpes..ipfkslielLcrg 478
                        eevs++++k+++lld+ +G+ + + e++++  ++t   sf + ++ +d +  + +k+++l L++++ie++P+cl+ s  ip+ks+ie+L+r+
   CCD25338.1 792 -----NEEVSSYFYKLFLLLDSVIGSEVWSPENQHKkqQSTPFGSFGLkNFsND-NDSNiNKNHNLMLFAIIIETIPCCLSISanIPYKSTIEILARN 883
                  .....*************************999994446666689999666445.44444779*****************88888************* PP

  MOR2-PAG1_N 479 tvHvdpeiaesaaqaLkaliarqkkrqqvvtgfarfifkfddkyssvsevsmlgseeieslLklyvelLeiWi 551
                  +vH+d++ia+s+++aLka +a++k++++++t+fa++ f+fd+k++s++++s+l+s+e+++lL+lyv+lL++W+
   CCD25338.1 884 AVHADHSIATSSQNALKA-LASKKNPYTLITWFAKYSFDFDEKTQSSYNMSYLSSAEYHKLLTLYVNLLQCWL 955
                  ******************.*****************************************************5 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.15
  MOR2-PAG1_N  303 afkniifpllnaelfsss........klenlepermiigirAflai.lsdlekkeq.rPpfPtssdasekeedllsrpvgtsalsetk 380 
                   +  +i++++ n+++++++        +++++ pe +i   +++l   +++l ++++ r  +Pt++ +   +++++   v++++ +++k
   CCD25338.1 1153 V-HEIVLHIANSSISNTTtnindeflRSKKILPETIINQWKSYLIAaCTSLTSTSDqRLHIPTKTMQHGRKKSQQIFTVQHQKIKSAK 1239
                   3.448888888887444456777787789999999999999998542788888866699***97433333333333333333332222 PP

>> MOR2-PAG1_C  Cell morphogenesis C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1     0.065   2.3e+02     178     213 ..    1792    1827 ..    1771    1846 .. 0.81
   2 !  287.7   0.4   2.7e-89   9.7e-86       1     253 []    1987    2237 ..    1987    2237 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.065
  MOR2-PAG1_C  178 sealvlllgllengpewlrrktlqiLkvllqeidlr 213 
                   + ++++l++ll+n +e++++k+ ++L++ +  +d+ 
   CCD25338.1 1792 QLSIIFLVNLLTNPTESIKSKLSSLLHISICLLDHY 1827
                   34799****************999999877666655 PP

  == domain 2  score: 287.7 bits;  conditional E-value: 2.7e-89
  MOR2-PAG1_C    1 pqlFWttvAcLetdfeseFlealelLeklldkldlddpevvevllksqpqkwegdfeglqalvlkGlrssetleatlellskLtklsddelvdssd 96  
                   pqlFW+++AcL++++e+eF+e+l++++k+++k+dld+p++v++l+ ++p++weg+f+glq++v+ Glrss+++e tl++l+kL+ l+d++++ ++d
   CCD25338.1 1987 PQLFWSIIACLNSIHEQEFIEVLSCITKFISKIDLDSPDTVQCLIATFPSNWEGRFDGLQPIVMTGLRSSNSFEITLKFLDKLNLLKDSQIIANPD 2082
                   9*********************************************************************************************** PP

  MOR2-PAG1_C   97 srllllilalLPrllqaleekeedqkvlevAenlaalaeekglenLarvltsyakgrfrtkddflkqvvkalreayfpehesealvlllgllengp 192 
                   srll++++ +LPr+l+a+++k   +++++++++l +l++ +++++L+r+++s+ak++fr+k+df++qvv+ + ++yfp++++++lv++lgll+n+ 
   CCD25338.1 2083 SRLLFALISNLPRFLNAMDKK-DFSSIQNATDSLISLSNINNQPSLSRLIDSLAKNKFRSKKDFMSQVVSFISRNYFPTYAAQTLVFFLGLLLNKV 2177
                   *******************87.788899******************************************************************** PP

  MOR2-PAG1_C  193 ewlrrktlqiLkvllqeidlrkpaeisslgsdllspllrlletelcseALeVLdevvsvsg 253 
                   +w++++tl iLk +++ +dl++p e++++g+dl+spllrll t++  +ALeVLd v ++sg
   CCD25338.1 2178 DWIKIQTLAILKYVFPLVDLTSP-EFTGVGADLISPLLRLLLTKFDTQALEVLDCVPNISG 2237
                   *********************88.*******************************998875 PP

>> MOR2-PAG1_mid  Cell morphogenesis central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1     6e-06     0.022       8     167 ..    1004    1174 ..    1000    1219 .. 0.74
   2 ?    0.1   0.0     0.032   1.1e+02     184     246 ..    1230    1292 ..    1223    1448 .. 0.85
   3 !   30.2   0.7   2.6e-11   9.2e-08     487     708 ..    1488    1712 ..    1472    1721 .. 0.80
   4 !   44.8   0.1     1e-15   3.7e-12     916    1089 ..    1780    1937 ..    1729    1959 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6e-06
  MOR2-PAG1_mid    8 eldavgliflssvdvqirhtalellrcvralkndlrdlsvk.....ersdsklknekepifiidvleengddivqscywdsgrpydlrresda. 95  
                     e++  gl fl++ d++ir+ a+++lr++  + + + + +++      rs s+    ++ + +idvl++     + + y  s    +  r + + 
     CCD25338.1 1004 EVEGNGLFFLCAHDSNIRQLAIKILRIISKFDEAMAEKTINisnghSRSSSSHFVADQGTRLIDVLNNCDVMSLFQPYMTSLSAIEKSRLVRSn 1097
                     67788***********************988777766544311111455566666777899*****9887777889999998888766644330 PP

  MOR2-PAG1_mid   96 .vpsdvtlqsilesa...dksrwarclselvkyaaelcpssvqearlevvqrlaqitpvelgg.kakqsqdteskld 167 
                        ++  + ++ es+   d + w r++  l+   ++ cp ++  +r  v  rl q+  + l   ++  s+ t +  d
     CCD25338.1 1098 sRFKKGLIVTLAESNfgiDSALWQRVFPRLLSLISKSCPITMALCRSIVCIRLVQVHEIVLHIaNSSISNTTTNIND 1174
                     022333344455664444999*************************9999999999988876413444444444444 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.032
  MOR2-PAG1_mid  184 redsalkaakelyhlilpslksgseakikaatlalghshlevceimlgelasfleevasetes 246 
                     ++++++k+ak +++++lp l+s       a  + l    +++ +  +  +  fl+    +t++
     CCD25338.1 1230 VQHQKIKSAKSIFKMVLPLLNSKHIIIRDAIIAGLSSMNINIYKTYIESIDPFLNCWKEDTNT 1292
                     567899**************9998888888888899999999999999888888766655554 PP

  == domain 3  score: 30.2 bits;  conditional E-value: 2.6e-11
  MOR2-PAG1_mid  487 lakvalknllqt...nldlfpacidqcyssd..asiadgyfsvlaevymrqeipkceiqrllslilykvvdqsrkirddalqmletlsvrewae 575 
                     l   al+nll     n  lf a+  qc ss   +s++  y++ l++  ++ +    e   l+sl ly +v + ++ r  a+++l ++  +    
     CCD25338.1 1488 LGVEALENLLDKntnNAKLFKAVSLQCISSHthPSVSVLYYTTLCKSVLKLDDLILEEGELVSLGLYGIVSDREETRIYAVDLLSAVETKLH-- 1579
                     666799999975112468*********98752279****************9999**********************999999877655543.. PP

  MOR2-PAG1_mid  576 dgeegagryraavvgnlpdsyqqfqyklsaklakdhpelsellceei...mqrqldavdiiaqhqvltcmapwienlnflklkesgwserllks 666 
                      ++  a  ++  +  +    y+    ++s+ +a     ls+ lc +i   + r ld     a+ ++l  + pw++ + + k  e   +  +l+ 
     CCD25338.1 1580 -NSSYAKVFKERLANSSKTVYKSTAKEISSIFAE---LLSQDLCLKIfcnLTRMLDLFPFEAKRDLLVLIVPWVNRFTL-KSIEELETFMILNN 1668
                     .333445555555556666666666666666664...58*******94445799********************99955.55566667899*** PP

  MOR2-PAG1_mid  667 lyyvtwrhgdqfpdeieklwstva..skrrniipvldflitkgi 708 
                     l+y+t    + +  eie+lw ++   +  +ni   l++++   i
     CCD25338.1 1669 LFYITIELNNVLLAEIEQLWISLGkgNSFQNIHVSLEYILQLSI 1712
                     *********************99622567899999999877655 PP

  == domain 4  score: 44.8 bits;  conditional E-value: 1e-15
  MOR2-PAG1_mid  916 alqghqhllsradialillaeiayendedfrehlpllfhvtlvsmdssedivlkhcqdllvnllyslagrhlelyevessdgenkqqvvsliky 1009
                       qg+  ++s+a++++i+l ++  +  e ++++l  l+h+++  +d    ++ +   +++ nl++ la  h           e+ ++vv li+ 
     CCD25338.1 1780 NYQGKAIMFSKAQLSIIFLVNLLTNPTESIKSKLSSLLHISICLLDHYVPLIQECASKIVCNLIFGLAPTH-----------EKSEEVVELIR- 1861
                     46899999*******************************************999999***********998...........44557899986. PP

  MOR2-PAG1_mid 1010 vqskrgslmwenedatlvrtelpsaallsalvlslvdaiffqgdlrekwgaealkwamectsrhlacrshqiyralrpsv 1089
                         +  l+w  ++    +    s   + +l+++l+       d++ +w + alkwa  c+ rh+acrs q++r+l   +
     CCD25338.1 1862 ----NRNLLWSYDNLFKDKKGARSPKSMDSLIRNLIGIFSAIPDFQTEWQKTALKWATTCSVRHVACRSFQVFRSLLTFL 1937
                     ....456899999888888888899999999999998888889*******************************997655 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1         4   1.4e+04      71      99 ..    1017    1044 ..    1013    1056 .. 0.66
   2 ?   -2.7   0.0       1.4   5.2e+03      57     135 ..    1121    1210 ..    1115    1236 .. 0.68
   3 ?   -2.2   0.1       1.1   3.9e+03      50     121 ..    1231    1303 ..    1226    1336 .. 0.54
   4 ?   -0.6   0.1      0.34   1.2e+03      66      98 ..    1477    1509 ..    1467    1617 .. 0.62
   5 ?   -2.8   0.1       1.6   5.6e+03      82     143 ..    1798    1862 ..    1791    1864 .. 0.54
   6 !   17.8   0.2   7.5e-07    0.0027      56     144 ..    1942    2033 ..    1922    2040 .. 0.82

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 4
        Cnd1   71 nprVvanalaalteiseksenaiynllpd 99  
                  +++++++a+ +l  is+ + +a+ + +++
  CCD25338.1 1017 DSNIRQLAIKILRIISKFD-EAMAEKTIN 1044
                  6778888888888888776.444444444 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.4
        Cnd1   57 kgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalne.............csewgqitilefLlsyipkdkqeae 135 
                  + ++ +l++l++ + p  +a+++++ +  + +  ++++ +  ++is+  +++n+             +++w+   i  + +   ++d++   
  CCD25338.1 1121 QRVFPRLLSLISKSCPITMALCRSIVCIRLVQVHEIVLHIANSSISNTTTNINDeflrskkilpetiINQWKSYLIAACTSLTSTSDQR--L 1210
                  56677777777777777777777777776666557777777777777777666666666667777778888777766555544444444..4 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.1
        Cnd1   50 lndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalne....csewgqitile 121 
                  +++ +k+ + ++++   l ++++ ++  a++a   +s+++  +iy+  +++i  ++++ +e     s++++++++ 
  CCD25338.1 1231 QHQKIKSAKSIFKMVLPLLNSKHIIIRDAIIA--GLSSMN-INIYKTYIESIDPFLNCWKEdtntTSNKTRVEMFH 1303
                  56777777766666665555555555554443..333333.33555555555555553333333355555544333 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.34
        Cnd1   66 lleDenprVvanalaalteiseksenaiynllp 98  
                  l + +n++V+++ + al+++++k++n++   + 
  CCD25338.1 1477 LFDSNNETVRNLGVEALENLLDKNTNNAKLFKA 1509
                  344456677777777777777775444332222 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 1.6
        Cnd1   82 lteiseksenaiynllpdiisklsdalne.....csewgqitilefLlsyipkdkqeaeslveklcp 143 
                  l +++++ ++ i + l+++  ++s +l +     ++e + + ++++++   p  ++  e++ve + +
  CCD25338.1 1798 LVNLLTNPTESIKSKLSSL-LHISICLLDhyvplIQECASKIVCNLIFGLAPTHEK-SEEVVELIRN 1862
                  5555555322222222222.222222222455557888888888888888888888.8888887755 PP

  == domain 6  score: 17.8 bits;  conditional E-value: 7.5e-07
        Cnd1   56 ekgflselaklleDenprVvanalaalteisek....senaiynllpdiisklsdalnecsewgqitilefLlsyipkdkqeaeslveklcpr 144 
                   k++l++l + ++D+n+ ++  a  +l+ ++      +  + + ++p+++ ++ ++ln+++e+++i++l++++++i+k + +  + v+ l++ 
  CCD25338.1 1942 LKDMLHRLSNTISDSNTDIQGFAMQILMTLNAImaelD-PTYLISFPQLFWSIIACLNSIHEQEFIEVLSCITKFISKIDLDSPDTVQCLIAT 2033
                  46899******************999988887764223.3445577999999999*********************99888777777776665 PP

>> MAT1  CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   5.6   6.6e-05      0.24      91     166 ..     303     380 ..     290     415 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.6e-05
        MAT1  91 eeeeleeleelekeek..eekrkeekqeeeeekekkekakeelideLatsskdaeeiiekvkkkakkkkssekeklee 166
                  +++le+ +++ + ek  ++k  + ++  ++e+ ++ ++k+++i +L++ss ++++i++++k+++ +k+s+ +++++ 
  CCD25338.1 303 AAKDLENFIKEYQIEKdkQSKIIQPRRSPHSENLTRSNSKKKIIPSLNESSPSSTSILHQHKRNVSSKSSMGSNRKSF 380
                 33444444444444440044444556777888889999****************************995554443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.13u 0.30s 00:00:01.43 Elapsed: 00:00:00.47
# Mc/sec: 15298.32
//
Query:       CCD25339.1  [L=1105]
Description: hypothetical protein NDAI_0F00200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-60  203.0   5.7    5.6e-60  203.0   5.7    2.2  2  UCH           Ubiquitin carboxyl-terminal hydrolase
      2e-19   70.4  11.3      2e-19   70.4  11.3    3.1  2  UCH_1         Ubiquitin carboxyl-terminal hydrolase
    0.00012   22.6   0.0    0.00065   20.2   0.0    2.3  2  Rhodanese     Rhodanese-like domain
  ------ inclusion threshold ------
       0.34   10.7   2.7       0.77    9.5   0.8    2.3  2  DUF3094       Protein of unknown function (DUF3094)


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.5   4.3         4   1.8e+04      55      55 ..     252     252 ..      98     388 .. 0.63
   2 !  203.0   5.7   1.2e-63   5.6e-60       1     257 []     678    1100 ..     678    1100 .. 0.93

  Alignments for each domain:
  == domain 1  score: -5.5 bits;  conditional E-value: 4
                 T CS
                 x RF
         UCH  55 g 55 
                 +
  CCD25339.1 252 D 252
                 0 PP

  == domain 2  score: 203.0 bits;  conditional E-value: 1.2e-63
                  -EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGT.SSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
         UCH    1 tGlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaksfs.gyk 96  
                  tGl+NlGntCy+ns+lQcLf+++ +rd+++s       s+ ++ +n +++ ++  +++++++ lfk+++ +  ++v P++++kt++ l+++++   +
  CCD25339.1  678 TGLRNLGNTCYINSMLQCLFATRLFRDLFIS-------SKFQSFIN-DSKFPNTPKISNSFNLLFKKMYLNGGCSVVPTSFLKTCNILRPDLRiPDD 766 
                  7******************************.......44444444.333555568*************889********************9899* PP

                  TCEHHHHHHHHHHHHHHHHCC......................HCCCHHH..HHHCCCTTSHHHHHH-EEEEE........................ CS
                  xxxxxxxxxxxxxxxxxxxxx......................xxxxxxx..xxxxxxxxxxxxxxxxxxxxx........................ RF
         UCH   97 qqDaqEflaflLdqlhedlnr......................evaeekw..kkhlkrndslitdlfegqlks........................ 145 
                  qqD+qEfl+++Ld+lh++l++                      ++++++w  k+ + +  s+i+++f gq+++                        
  CCD25339.1  767 QQDTQEFLMIILDRLHDELSNqqevvneypnlllydennlkvqNKEYKHWfdKNVIGNGLSPIDHIFSGQMENslqcqrcgnssynystfyvlslai 863 
                  ******************************************9999999**99******************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
         UCH  146 ................................................................................................. 145 
                                                                                                                   
  CCD25339.1  864 pkpssttfsrskrvkleecinmftsdevlsgenawdcpkcgssasstisdsekllnvtsskkknmsshnehhrykskfftlhtrshrsispfrkkts 960 
                  ************************************************************************************************* PP

                  ......................EEEEEEB-SEEEEEEESEEETEEEEE--SEEB--SEEE-GGGBSS-BTTS-TCS-BEEEEEEEEEESCTTSEEEE CS
                  ......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  146 ......................klklkrlPeiLiihlkRfsynssksKlntkvefpeeldlssylaeekkkkteekkkYeLiavvvHsGslssGHYv 220 
                                        +l++  lP+iL+ihl+Rf+y+ + +K+nt +++p+ l++   l++      +e  kY+L+++v+HsG+l sGHY+
  CCD25339.1  961 paavpsstknepwkskklitikTLNFIVLPPILVIHLSRFYYDLT-KKNNTVITYPLILNIV--LKN------NEVAKYRLYGIVNHSGNLISGHYT 1048
                  *********************************************.**********999997..232......23345******************* PP

                  EEEECTTTTE.......EEEEETTEEEEE-HH.......CCCTT.CEEEEEE CS
                  xxxxxxxxxx.......xxxxxxxxxxxxxxx.......xxxxx.xxxxxxx RF
         UCH  221 ayiknekngk.......WykydDetvkevkee.......eevls.sayiLfY 257 
                  +++++e n+        Wy++dDetvke +++        +v+s ++y+LfY
  CCD25339.1 1049 SLVNKEPNHDlgskkqrWYYFDDETVKEERNHgdmdkgiLQVSSrDVYVLFY 1100
                  *9996666667777788*************886666544345559******* PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   1.2      0.47   2.1e+03     214     262 ..     191     248 ..      88     348 .. 0.59
   2 !   70.4  11.3   4.4e-23     2e-19       2     319 ..     679    1073 ..     678    1074 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.47
                 xxxxxxxxxxxxxxx........xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 214 nlPpvLalnakleee........eelelwktknwlp.leiklsldedknleeklkeer 262
                  lP +L ++ + ++e        ++  lw +++  p  ++kl  ++++n+++++++++
  CCD25339.1 191 LLPIILHCDEEFSNEeinatdfdRASPLWTAPSLEPkDQLKLAYTNNTNTKTNTDNNN 248
                 4455555555544332333333222233333322222333333333332222222222 PP

  == domain 2  score: 70.4 bits;  conditional E-value: 4.4e-23
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1    2 GLEnhivnsYlNslLQvlyfipplrnlalshlakeckke......hcLlcElgflfdmldkakglncqasnFlralssipeasalglileeeeetek 92  
                  GL n  +++Y+Ns+LQ+l+ + ++r l +s+  ++  ++       +++  + +lf+ +    g ++  + Fl++ + ++    l++  +++++   
  CCD25339.1  679 GLRNLGNTCYINSMLQCLFATRLFRDLFISSKFQSFINDskfpntPKISNSFNLLFKKMYLNGGCSVVPTSFLKTCNILR--PDLRIP-DDQQD--- 769 
                  99999********************555554444333333556669*******************************999..999995.44333... PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   93 ssaislssliqsfnrflldqlekelketkkns..............................seeesaieqllgtkaettirclkCgseksrksstl 159 
                           +q+f  ++ld+l++el+++++                                 +  s+i+ +++ ++e++++c++Cg+ + + s+++
  CCD25339.1  770 ---------TQEFLMIILDRLHDELSNQQEVVneypnlllydennlkvqnkeykhwfdknviGNGLSPIDHIFSGQMENSLQCQRCGNSSYNYSTFY 857 
                  .........589************999876559*****************************9999******************************* PP

                  xxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxx..xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............... RF
       UCH_1  160 vldlkyPkpsne..kkeakvtfasilksslerektt..raw.CekCkryqpteqrktvknlPpvLalnakleeeeelelwkt............... 236 
                  vl+l  Pkps++  +++++v+++++++++ + e  +  +aw C+kC + ++ +   + k l    +  +++++ +e++ +k                
  CCD25339.1  858 VLSLAIPKPSSTtfSRSKRVKLEECINMFTSDEVLSgeNAWdCPKCGSSASSTISDSEKLLNVTSSKKKNMSSHNEHHRYKSkfftlhtrshrsisp 954 
                  ****999755556788888899999999998854332255559999776666666665544444444444444443444444477777788888888 PP

                  .......................................xxxxx.xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  237 .......................................knwlp.leiklsldedknl....eeklkeerekakaekeikvYeLqsvvvhigdskes 289 
                                                            +  ++++ +l++++n+       l  +     +++e+++Y L ++v h g +  s
  CCD25339.1  955 frkktspaavpsstknepwkskklitiktlnfivlppilV--IHlSRFYYDLTKKNNTvityP--LILNIV--LKNNEVAKYRLYGIVNHSG-NLIS 1044
                  8888888888888888888888888888877776653221..224555555666555566442..333333..44789**************.555* PP

                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  290 ghLvslvkvaekelerdppesqWylFNDfl 319 
                  gh+ slv+ +e++++  +++++Wy F+D  
  CCD25339.1 1045 GHYTSLVN-KEPNHDLGSKKQRWYYFDDET 1073
                  ********.577787799999*******65 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.8   1.2e+04      51      76 ..     175     201 ..     152     208 .. 0.65
   2 !   20.2   0.0   1.4e-07   0.00065       5     106 ..     386     510 ..     383     511 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.8
   Rhodanese  51 llelpeellel.gidnkktvvvycdgg 76 
                  +++ ++l ++    +  +++++cd+ 
  CCD25339.1 175 NNKTETSLTNQpPNHHLLPIILHCDEE 201
                 444444444445556677899999875 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.4e-07
   Rhodanese   5 lkellekgkvallDvRppeeYekghI..pgAvnv........skdtlsrakkseapllelpeellel.gidnkktvvvycdgggraaaa.aallk.... 87 
                 l + +ek k  l+D R+p +++  hI  p+ + +          +t  +   + ++ll+ p++ + l ++++ + +v+y d++  ++    + ++    
  CCD25339.1 386 LSNPIEKSKLLLIDLRFPKRFSSNHIvaPNLIMIdpmllwnsKTNTPIYDITTLENLLYEPKARKLLqNRTQFEYIVFYTDNKTYMNTNfDYSFTffyl 484
                 56778999989************************9997665333333333444444444444444489**************9966666666665656 PP

   Rhodanese  88 ....k..lGykn.vsvldGGfkawke 106
                     k   + k    +l GG+++wk+
  CCD25339.1 485 lvtsKtnKNIKSaPTHLLGGYDKWKK 510
                 66661556677779**********96 PP

>> DUF3094  Protein of unknown function (DUF3094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.8   0.00017      0.77       7      24 ..     617     634 ..     614     637 .. 0.89
   2 ?   -0.6   0.0      0.24   1.1e+03       6      16 ..     764     774 ..     762     778 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00017
     DUF3094   7 eDqqkvdqYLsaPqHqvE 24 
                   qq+ +qYL + qHqvE
  CCD25339.1 617 KSQQHRNQYLTSYQHQVE 634
                 569**************9 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.24
     DUF3094   6 PeDqqkvdqYL 16 
                 P+Dqq  +++L
  CCD25339.1 764 PDDQQDTQEFL 774
                 9*****99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 7240.21
//
Query:       CCD25340.1  [L=653]
Description: hypothetical protein NDAI_0F00210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-53  182.2   0.0    3.3e-53  181.5   0.0    1.3  1  DAO            FAD dependent oxidoreductase
    3.5e-38  130.3   0.0    6.3e-38  129.5   0.0    1.4  1  DAO_C          C-terminal domain of alpha-glycerophosphate ox
    2.8e-10   39.9   0.1    2.3e-06   26.9   0.1    2.2  2  FAD_binding_2  FAD binding domain
    3.1e-09   36.7   0.2    5.8e-06   25.9   0.1    2.2  2  FAD_oxidored   FAD dependent oxidoreductase
    8.6e-05   21.9   0.1    0.00025   20.4   0.0    1.7  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    0.00012   21.3   0.5     0.0087   15.2   0.1    2.2  2  GIDA           Glucose inhibited division protein A
     0.0012   19.1   0.4     0.0045   17.2   0.3    2.0  2  NAD_binding_8  NAD(P)-binding Rossmann-like domain
     0.0019   17.0   0.2     0.0032   16.3   0.2    1.3  1  HI0933_like    HI0933-like protein
     0.0036   16.6   0.1      0.045   13.0   0.1    2.1  1  FAD_binding_3  FAD binding domain
      0.007   15.8   0.1      0.015   14.7   0.0    1.5  2  GMC_oxred_N    GMC oxidoreductase
  ------ inclusion threshold ------
      0.013   14.7   0.2      0.037   13.3   0.1    1.8  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
      0.044   13.0   0.6       0.47    9.6   0.0    2.3  2  Thi4           Thi4 family
       0.06   13.9   0.1       0.23   12.0   0.1    2.0  1  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.077   12.9   0.5       0.27   11.1   0.2    1.9  2  3HCDH_N        3-hydroxyacyl-CoA dehydrogenase, NAD binding d


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.5   0.0   2.6e-56   3.3e-53       1     352 []      74     474 ..      74     474 .. 0.81

  Alignments for each domain:
  == domain 1  score: 181.5 bits;  conditional E-value: 2.6e-56
                 EEEEECTSHHHHHHHHHHHHTT..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH.....HHHHHHHHHHHHHHHHHHHHSSTTSEEEEEEEEEESS CS
         DAO   1 dvviiGGGiiGlstAyeLarrg..VtllekgdiagsgaSgrnsgllhsglrylpeas.....elarlslealeelreleeelgididyrrtGllslaad 92 
                 d++iiGGG +G ++A+++a+rg  V+l+e++ +++sg+S++++++ h+g+ryl++a       +++l+ eal+e+++l ++ ++++    + l++++ +
  CCD25340.1  74 DLLIIGGGATGTGCALDAATRGlnVALVERD-DFASGTSSKSTKMAHGGVRYLEKAFlqfskSQLDLVIEALNERAHLLNT-APHLCKILPILIPVY-N 169
                 789****************************.6666******************98899*99555**********999997.9**999999999996.3 PP

                 HHHHHHHHHHHHHH....HHTTTTE.EEEEHHHHHHHSTTST..TTSEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESECEEEE.EEEE.TCEEEE CS
         DAO  93 eeelealdkllall....leaglda.elldaeevrelepalp..gllgalfypdtgqvdpakltaalaraaealGveilegtevtgl.eeed.gkvwgv 182
                   +l+++ +  +      ++++l++ +l++++++ e++p+l+  +l++al+y+d g +++ +l  ++a +a ++G+++l++ ev++l ++++ +k+ gv
  CCD25340.1 170 YWQLPYFYAGCKFYdffaGDQNLKSsYLISRKNAIEIAPMLDaaNLKAALVYHD-GSFNDSRLNSSIAITAIENGATVLNYVEVRKLlKDPNsNKIIGV 267
                 3235554433333344585567766369***99*******5556999*******.*******************************7465558899999 PP

                 E.EECT.EEEE..EEEEEEE--GGGHH.HHHTTCTT...........................TSEEEEEEEEEEEEEECCTHSTGSGCSEEEEE.EEE CS
         DAO 183 e.rttp.gend..aadavVnaaGawsd.llgllkel...........................dlpispvrgqvlvlkplseklvspaailpvpe.tdd 248
                   ++++ ge++  + + +Vna+G++sd +l+++k+l                           +++++p  g ++ l p       p+ ++ +++ +++
  CCD25340.1 268 TvQDKEtGEISnvKSKVIVNATGPYSDtILQMDKNLsglpdlanidpkmydpndisskiavsnPKMVVPSSGVHIIL-PSYYC---PK-QMGLLDaRTT 361
                 88666668874244366**********655777556666888***9999999888887776644788**********.55552...32.2222223899 PP

                 TTTTEEEEEETTSEEEEEESSEEETTCSS.TSCSHHHHHHHHHHHHHHS..GG.GCGEEEEEEEEEEE.TTSSEEEEEEE........TEEEEEEEEEC CS
         DAO 249 dgrgvyvtprkdgrvlvGgtadeesgddd.pevdeedidellealrklf..Pq.lgdvlrkwaGlrpl.pdglpligetp........gvkglylatGh 334
                 dgr+++++p+  g+v++G+t+ + s+  d p + e di+++l++l++++  P   +dvl++waG+rpl +d   +++ ++         v+ ++l t  
  CCD25340.1 362 DGRVMFFLPWQ-GKVIAGTTDIPMSQVPDtPVAKETDIQDILKELQHYIkfPVrREDVLSAWAGIRPLvRDPRLIMDDATqklgttqgLVRSHFLFTSD 459
                 9*********5.*********955554444899999*************88774599**********64566666666445777777878888888777 PP

                 TTTHHHHHHHHHHHHHHH CS
         DAO 335 sghGltlapatGkllael 352
                   +Gl + ++ Gk+++++
  CCD25340.1 460 --NGLITIAG-GKWTTYR 474
                 ..********.****986 PP

>> DAO_C  C-terminal domain of alpha-glycerophosphate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.0   4.9e-41   6.3e-38       1     126 []     497     637 ..     497     637 .. 0.98

  Alignments for each domain:
  == domain 1  score: 129.5 bits;  conditional E-value: 4.9e-41
                 --TTS---TT--.......TT-STTHT--HHHHHHHHHHHGGGHHHHHHHHHHTH..................HHHHHTTS-HHHHHHHHHHHHHS--- CS
       DAO_C   1 crTkklpLvGaenwsknlaaelaqeygldeevaehLaerYGsraeevlelakedekp...............elaerlspelpyieaevvYavrhEmar 84 
                 c+Tk+l+L+Gaenw++nl a l+q+++l++ +a++L+e+YG+r + +++l + +e +                + +  ++++p++ ae++Ya+++E+ar
  CCD25340.1 497 CKTKDLKLIGAENWDPNLVALLSQKFNLSSMMAKYLSENYGTRSTIICQLFEREEMNklpvqlagiedkpilGNVDFNTFRYPITIAELKYAMKYEYAR 595
                 9************************************************99999999***************99************************* PP

                 SHHHHHHTTS-HHHH-HHHHHHHHHHHHHHHHHHTT--HHHH CS
       DAO_C  85 tlvDvlaRRtrlafldadaalealpevaelmaeelgWdearr 126
                 t+ D+l+RRtr+a+lda +al a+++++++m++e+gWd++rr
  CCD25340.1 596 TPLDFLMRRTRFAYLDAYQALLAVKGTVKVMGDEFGWDSKRR 637
                 **************************************9986 PP

>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   1.8e-09   2.3e-06       1      45 [.      74     122 ..      74     149 .. 0.89
   2 !   10.8   0.0   0.00015      0.19     151     204 ..     239     294 ..     222     309 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.8e-09
                    SEEEE--SHHHHHHHHHHHHTTT-EEEEESSSGGGS....GGGG--S-E CS
  FAD_binding_2   1 DviViGsGlAGLaAAleaaeaGlkvavvekeqefgg....atawsqGgi 45 
                    D+++iG+G+ G  +Al aa +Gl+va+ve  +  +g    +t ++ Gg+
     CCD25340.1  74 DLLIIGGGATGTGCALDAATRGLNVALVERDDFASGtsskSTKMAHGGV 122
                    89******************************99996666666777776 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00015
                    HHTCTEEEEESEEEEEEEECTT..EEEEEEEEETTTTCEEEEEESEEEE-----GG CS
  FAD_binding_2 151 arkagvdfqerteadeLivedg..rvtGavvenpesgrevrirakavvlatgGfgr 204
                    a ++g ++++  e+++L+ + +  ++ G++v+++e+g++  +++k +v atg ++ 
     CCD25340.1 239 AIENGATVLNYVEVRKLLKDPNsnKIIGVTVQDKETGEISNVKSKVIVNATGPYSD 294
                    55777899999********86667****************************9985 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.1   4.6e-09   5.8e-06       1      45 [.      74     118 ..      74     153 .. 0.87
   2 !    8.7   0.0   0.00075      0.95      91     144 ..     234     290 ..     197     291 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.9 bits;  conditional E-value: 4.6e-09
  FAD_oxidored   1 DvvVvGGgpaGvaAAiaAaraGakvlLveergvlGGlltsglvat 45 
                   D++++GGg+ G+ +A+ Aa +G +v+Lve++++  G++++   ++
    CCD25340.1  74 DLLIIGGGATGTGCALDAATRGLNVALVERDDFASGTSSKSTKMA 118
                   99*******************************999998876655 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00075
  FAD_oxidored  91 avleemlaeagvtvllntrlveveke..gkriesvtveske.g.rktirAkvfiDATg 144
                   +++     e+g tvl   ++++  k+   ++i +vtv++ke g   ++++kv++ ATg
    CCD25340.1 234 SIAIT-AIENGATVLNYVEVRKLLKDpnSNKIIGVTVQDKEtGeISNVKSKVIVNATG 290
                   33333.346699********99999743478**********9999************8 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.9e-07   0.00025       2      48 ..      74     119 ..      73     155 .. 0.80
   2 ?   -1.7   0.0       1.1   1.4e+03     192     240 ..     238     294 ..     203     306 .. 0.50

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.9e-07
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallg 48 
                  d+++iGgG+ G+ +al++a+ g++v+lv +++ +  g+ + s+++++
   CCD25340.1  74 DLLIIGGGATGTGCALDAATRGLNVALV-ERDDFASGTSSKSTKMAH 119
                  899*************************.677777776666665554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
                  HHHHTTEEEEESCEEEEEEETTE.....EEEEEETTSCE...EEESEEEE-S-EEES CS
                  xxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxx...xxxxxxxxxxxxxxx RF
  Pyr_redox_2 192 alekeGvevklgtsvkeidgnge.....klevvledgee...idadlvvvavGvrps 240
                     ++G +v    +v ++ ++++      ++v++++  e   ++ + +v a+G   +
   CCD25340.1 238 TAIENGATVLNYVEVRKLLKDPNsnkiiGVTVQDKETGEisnVKSKVIVNATGPYSD 294
                  444445555555555555555444433333333333333455555555555555444 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   6.8e-06    0.0087       1      34 [.      74     105 ..      74     140 .. 0.83
   2 ?    4.3   0.1     0.013        17     125     158 ..     258     299 ..     230     307 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 6.8e-06
                 CEEEE-SSHHHHHHHHHHHHTT--EEEEES-GGG CS
        GIDA   1 dviViGgGhAGceAAlaaarlGakvlLithkldt 34 
                 d+ +iGgG  G+ +Al aa +G++v+L+  + d+
  CCD25340.1  74 DLLIIGGGATGTGCALDAATRGLNVALV--ERDD 105
                 5789***********************9..3333 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.013
                 T...TEEEEEEETTS-E.....EEECEEEE--TT-BT-EEEE CS
        GIDA 125 e...kkvkgvvtedget.....ikakavviatGtflkgkihi 158
                 +   +k+ gv+ +d+et     +k+k++v atG++++   ++
  CCD25340.1 258 DpnsNKIIGVTVQDKETgeisnVKSKVIVNATGPYSDTILQM 299
                 235599999998887653323367779999****98776655 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.3   3.5e-06    0.0045       1      41 [.      77     120 ..      77     137 .. 0.84
   2 ?   -2.5   0.0       4.8   6.2e+03      31      48 ..     466     488 ..     465     493 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.5e-06
                    EE--SHHHHHHHHHHHCCTEEEEEE-SSSSSSGGG-EECE...T CS
  NAD_binding_8   1 IvGaGlsGlvaAylLakagfdvlllekrdrlGGraasyev...p 41 
                    I+G+G++G  +A  +a +g++v l+e+ d  +G ++  +    +
     CCD25340.1  77 IIGGGATGTGCALDAATRGLNVALVERDDFASGTSSKSTKmahG 120
                    9*****************************99998876544533 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.8
                    SSGGG-EECE..TT...CEECTS CS
  NAD_binding_8  31 lGGraasyev..pg...vrvdyg 48 
                     GG++++y+   ++    +v+yg
     CCD25340.1 466 AGGKWTTYREmaEEtidEVVKYG 488
                    599****9876522344566665 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   2.5e-06    0.0032       2      32 ..      74     104 ..      73     110 .. 0.93

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.5e-06
                  SEEEE--SHHHHHHHHHHHHTT--EEEE-SS CS
  HI0933_like   2 dviviGgGaAGlmaAisaakrgkrVllleka 32 
                  d+++iGgGa G  +A+ aa+rg +V+l+e+ 
   CCD25340.1  74 DLLIIGGGATGTGCALDAATRGLNVALVERD 104
                  789*************************986 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   3.5e-05     0.045       3     168 ..      74     295 ..      72     338 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.5e-05
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEESSSSSCCSS.S--EEEHHHHHHHHHTT-HHHHHHHSEECCCCEEEEEEE.................. CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvekrsttvvlp.radglnqrtmellrqlGledrilaegapnelmgealyne.................. 79 
                    d lI+G+G +G   al  +++G +v lve+ + ++ ++ ++  +    ++ l+++ l+ +  + + + e  +e                       
     CCD25340.1  74 DLLIIGGGATGTGCALDAATRGLNVALVERDDFASGTSsKSTKMAHGGVRYLEKAFLQFSKSQLDLVIEALNERAHLLntaphlckilpilipvyn 169
                    789******************************999988999999999999999988877666665544433333333567888899999999999 PP

                    ............................CCCC.......CEEEEEHHCHHCST-CEE--HHHHHHHHHHHHHHHTEEETCSEEEECCEECCCCCC. CS
  FAD_binding_3  80 ............................lsdt.......pkaradlelesspervtvypqteleriLvehaeerglqvrfktevesleqdeegvt. 139
                                                +s+            a+l+  +   +   ++ ++l+  ++  a e g++v    ev+ l++d ++ + 
     CCD25340.1 170 ywqlpyfyagckfydffagdqnlkssylISRKnaieiapMLDAANLK-AALVYHDGSFNDSRLNSSIAITAIENGATVLNYVEVRKLLKDPNSNKi 264
                    99999999999888888888877777764444444322212222222.122222334677888888888889999999999999999888877542 PP

                    ..CEEEECCTTEEEEEEEEEEEE--GTT-HH CS
  FAD_binding_3 140 ..aevrdketgeeetvrakYlvGaDGgrStv 168
                       +v+dketge+++v++k +v a G  S +
     CCD25340.1 265 igVTVQDKETGEISNVKSKVIVNATGPYSDT 295
                    2266779999999999999999998888765 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       4.3   5.5e+03       1      16 [.      73      88 ..      73     103 .. 0.81
   2 !   14.7   0.0   1.1e-05     0.015     202     264 ..     239     298 ..     232     319 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.3
  GMC_oxred_N  1 vdelveggGsagsvvA 16
                 +d l++ggG++g+  A
   CCD25340.1 73 FDLLIIGGGATGTGCA 88
                 57899*****998754 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.1e-05
  GMC_oxred_N 202 alerpnleiltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGalnsPqlLq 264
                  a+e+ ++++l  ++++k++ ++++++++GV+++dk+++  +++  + +v+v a    s ++Lq
   CCD25340.1 239 AIEN-GATVLNYVEVRKLLKDPNSNKIIGVTVQDKETG--EISNVKSKVIVNATGPYSDTILQ 298
                  5677.*************99******************..88888888888888777888886 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.9e-05     0.037       1      31 [.      76     105 ..      76     114 .. 0.90
   2 ?   -3.3   0.0       3.2   4.1e+03     129     174 ..     464     509 ..     462     509 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-05
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgn 31 
                  +IiG+G+ G ++a+ +   gl ++  +E++ 
   CCD25340.1  76 LIIGGGATGTGCALDAATRGL-NVALVERDD 105
                  6********************.799999975 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.2
  Pyr_redox_3 129 iiAtGefdkPnklnipGeeklvkhyskvkef.hkyagqkvvViGgkn 174
                   iA G++   + +  +  +  v+ y ++ +f ++ +++++  iG++n
   CCD25340.1 464 TIAGGKWTTYREMAEETID-EVVKYGHFANFaKPCKTKDLKLIGAEN 509
                  6888888888888888888.566666665541567899999999987 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00037      0.47      17      50 ..      72     104 ..      61     121 .. 0.86
   2 ?    0.8   0.1      0.19   2.4e+02     100     167 ..     232     290 ..     219     312 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00037
                 EEEEEEE--SHHHHHHHHHHHHCTTS-EEEEESS CS
        Thi4  17 esDvvivGaGssGLtaayylakkpdlkvailers 50 
                 + D++i+G+G++G  +a   a++ +l+va++er 
  CCD25340.1  72 QFDLLIIGGGATGTGCALDAATR-GLNVALVERD 104
                 579********************.********96 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.19
                 HHHHHHHHHTSTTEEEEESEEEEEEEEETB.TEEEEEEEEEHHHHTCTTTSS.-B-EEEEEEEEEE--G CS
        Thi4 100 tstllskvlqlanvkllnavaveDlivreg.egvaGvvinwtlvelahdtqscvDPlvirakvvvdatG 167
                  s ++  +++  ++ +ln v v  l+  ++ +++ Gv ++ +                +++kv+v+atG
  CCD25340.1 232 NSSIAITAIE-NGATVLNYVEVRKLLKDPNsNKIIGVTVQDKETGEI---------SNVKSKVIVNATG 290
                 5677777777.788888888888888777668888887765443322.........2466667777776 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   0.00018      0.23       2      32 ..      75     105 ..      74     125 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00018
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSS CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversd 32 
                 ++++GgG +g  +A  +a  g +V +ver d
  CCD25340.1  75 LLIIGGGATGTGCALDAATRGLNVALVERDD 105
                 69***************************87 PP

>> 3HCDH_N  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00021      0.27       4      35 ..      77     108 ..      74     138 .. 0.81
   2 ?   -1.3   0.0       1.4   1.8e+03      78      91 ..     136     149 ..     112     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
                 EE--SCCHHHHHHHHHHTT-EEEEE-S-HHHH CS
     3HCDH_N   4 viGaGtmGagiaavfasagleVvlvdiseeal 35 
                 +iG G  G+g a  +a +gl+V lv++++ a 
  CCD25340.1  77 IIGGGATGTGCALDAATRGLNVALVERDDFAS 108
                 8*************************976544 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.4
                 C-SEEEE-S-SSHH CS
     3HCDH_N  78 dadlviEavvEnle 91 
                 + dlviEa  E+ +
  CCD25340.1 136 QLDLVIEALNERAH 149
                 789******99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       551  (0.0307323); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.47
# Mc/sec: 4147.12
//
Query:       CCD25341.1  [L=266]
Description: hypothetical protein NDAI_0F00220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.8e-31  107.2   0.0    7.2e-31  106.6   0.0    1.3  1  Acyltransferase  Acyltransferase
  ------ inclusion threshold ------
        0.1   12.6   0.0       0.19   11.6   0.0    1.4  1  DUF5402          Family of unknown function (DUF5402)


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0     8e-35   7.2e-31       2     134 ..      61     188 ..      60     189 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 8e-35
  Acyltransferase   2 vrvtglenlpekgpailvaNHqsylDvlllwlllyksngprnvviiakkellsipllgflmrllgfifidRksnaraagsleniselleegkl. 94 
                      v++ g+enl++  p++l++NHqs+lDvl++   +     p+ + + ak +l++ p+lg++m+l+g++f+dR+++ +  ++l+n +  ++++k  
       CCD25341.1  61 VKIIGEENLSK-LPYVLISNHQSELDVLMIGKTF-----PPGCTVTAKGALKRAPILGWFMSLSGTVFLDRTDRTKSVTTLNNSLTNIKKNKRa 148
                      688899****6.**********************.....9**********************************************99999999 PP

  Acyltransferase  95 vviFPEGtrsregel..lpfkkGlvrlaakakkgvpivPvai 134
                      v+iFPEGtrs ++el  lpfkkG+++la++    +pivPv++
       CCD25341.1 149 VCIFPEGTRSYSTELhmLPFKKGAFHLAQQG--ELPIVPVVV 188
                      *******************************..*******86 PP

>> DUF5402  Family of unknown function (DUF5402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.2e-05      0.19      30      72 ..     200     244 ..     187     252 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.2e-05
     DUF5402  30 difalrcGcvGil..ievrGlevddveifkekileklkelakdle 72 
                 + f + c  v +l  i ++Gl+ +d+  f ek++  +++ +k+l+
  CCD25341.1 200 KTFNSGCMIVKVLkpIPTKGLKKEDITAFSEKVRSIMEKELKELG 244
                 567777777777755678*********************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       909  (0.0507); expected 358.6 (0.02)
Passed bias filter:                      696  (0.0388198); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1991.86
//
Query:       CCD25342.1  [L=486]
Description: hypothetical protein NDAI_0F00230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      0.005   15.0  26.1     0.0067   14.6  26.1    1.1  1  DNA_pol_phi     DNA polymerase phi
  ------ inclusion threshold ------
      0.014   13.6  21.5      0.022   13.0  21.5    1.4  1  Nop14           Nop14-like family
      0.063   13.2  14.7      0.099   12.5  14.7    1.3  1  CNDH2_C         Condensin II complex subunit CAP-H2 or CNDH2,
       0.31   11.2  25.2       0.82    9.8  25.2    1.6  1  DUF3340         C-terminal domain of tail specific protease (
        3.5    6.2  20.6        5.4    5.5  20.6    1.3  1  Hamartin        Hamartin protein
        7.1    7.1   8.7         18    5.9   0.0    2.4  2  Usp             Universal stress protein family
        9.2    4.7  16.7         15    4.0  16.7    1.3  1  RRN3            RNA polymerase I specific transcription initi


Domain annotation for each model (and alignments):
>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6  26.1   2.6e-06    0.0067     631     692 ..     214     280 ..     195     320 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.6e-06
  DNA_pol_phi 631 kegqaelf..edededeeddeeeeeeddeededseedddeeesdedeededdedvdeid...elrek 692
                  +++q++l     e++de+++eeeeee+d  d+ds+edd+++++de +e++d+e+v +i+   e++e+
   CCD25342.1 214 LKEQKNLKkkRSETDDEQTEEEEEEEEDVTDTDSDEDDEDDDEDESDEESDEEQVSDIEndvEIDEA 280
                  4444444422223333333333333333333333344444444444444445555444444644443 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0  21.5   8.6e-06     0.022     336     400 ..     198     272 ..     128     326 .. 0.53

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.6e-06
       Nop14 336 lgkgl.kataeeeeeededdfeedddlveseseeee.............eeeeedeeeeedeeeeeeeeededdlsdle 400
                 l++++ k+    ++++++++ +e+++l++++se ++              + ++de++e+d+e+e++ee+de++ sd e
  CCD25342.1 198 LNENIaKY----NKKKKKNELKEQKNLKKKRSETDDeqteeeeeeeedvTDTDSDEDDEDDDEDESDEESDEEQVSDIE 272
                 33333211....1111111111122222222221110000000000011223333333333333333333333333333 PP

>> CNDH2_C  Condensin II complex subunit CAP-H2 or CNDH2, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5  14.7   3.9e-05     0.099      68     160 ..     189     279 ..     116     316 .. 0.42

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.9e-05
     CNDH2_C  68 g......pafadeleylyqkeakerskarrklareeklkqalleeeeaeeeeevdeqeddddneaedgvdddddfgieleeeeddlkeseeeeeeeeee 160
                         ++ +++ +  +k++k+++k++++l  ++k  ++  e+ e+eeeee      +d  + +++ dd+dd ++e  ee+d+ + s+ e++ e +e
  CCD25342.1 189 QdpsmrlQNLNENIAKYNKKKKKNELKEQKNL--KKKRSETDDEQTEEEEEEE------EDVTDTDSDEDDEDDDEDESDEESDEEQVSDIENDVEIDE 279
                 02221112333333333334444444444433..2222222222222222222......2222222222222222222222222222222222233333 PP

>> DUF3340  C-terminal domain of tail specific protease (DUF3340)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  25.2   0.00032      0.82      45     148 ..     188     282 ..     182     282 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00032
     DUF3340  45 RiakdpeFklleediawlkerkekktvsLnekkr.kaereeqeakrlarenerekakglkplksllleknlekeeelekedekeaeedd.pkdkekkDi 141
                 R++ + +++ l+e+ia+++++k+k++  L+e+k  k++r+e ++++ ++e+e+e+     ++++ ++    ++++e+ +ede+ +e d+ + ++ ++D+
  CCD25342.1 188 RQDPSMRLQNLNENIAKYNKKKKKNE--LKEQKNlKKKRSETDDEQTEEEEEEEE-----DVTDTDS----DEDDEDDDEDESDEESDEeQVSDIENDV 275
                 78888999**********98888876..666665255666555555555544444.....4443333....2222222222222223335889999*** PP

     DUF3340 142 ylrEaan 148
                  ++Ea n
  CCD25342.1 276 EIDEAFN 282
                 ****975 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  20.6    0.0021       5.4     353     601 ..       6     272 ..       1     306 [. 0.54

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0021
    Hamartin 353 elsssasllsskvsstpeaagkatpetTPakssrkl.ppslsesavvvalpassrksspprkdeksesskpdlskqeevenekeleeslkskssvtlse 450
                 + s +a + ++k+ + p+   ++   tTP  s  kl +  + ++++  + ++s+ + +pp + + s + ++   ++++ + +++l+ +++s  svt  +
  CCD25342.1   6 NASRDADNDNNKSLGGPGINKRSILLTTPEGSETKLmKDAKNDDTIIDSPTTSTSDLQPPPSINIS-HIDSTADQMANLSPKTSLTVTADSPVSVTAAN 103
                 556677777788888888755555559999999988777777778888888888888888888765.66666777777777777777777888888888 PP

    Hamartin 451 Lsdvikelleaesedsvekeeeeaaisqelseiteekketlvsrggldspfsrtleslaksqr..rkrlasalssesisdaegaatkke.......... 537
                 +   + ++  +  ++ +e+ + + + s   +++ ++ +     +  ++ ++ r   sl+ s++  r r  s   +e++ +++   ++++          
  CCD25342.1 104 IGMTTPTTAVQFDAEEIERGRSRIKNSTTHANVNTNANPNNNTNNNMERSNRRIGGSLSTSRSrsRSRASSRIREEEFLKWTVLRQDPSmrlqnlneni 202
                 777777662222222223333333333333444444444456777777777777777766654334444444444455555555555553333333333 PP

    Hamartin 538 .aksskeaesslekekscsakqsftpieqklessk......dcpadeeesensleeklltpspckkaskqk 601
                  + ++k+++++l+++k+ + k s t  eq  e+++      d+++de+++ +  e++ ++ s+ ++ s+ +
  CCD25342.1 203 aKYNKKKKKNELKEQKNLKKKRSETDDEQTEEEEEeeedvtDTDSDEDDEDD-DEDESDEESDEEQVSDIE 272
                 3233333333333333333333333333322222222222222222222222.233334444444444334 PP

>> Usp  Universal stress protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   8.7       1.1   2.9e+03      44     106 ..     225     285 ..     202     285 .. 0.71
   2 ?    5.9   0.0    0.0069        18       9      38 ..     363     392 ..     360     407 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
                 CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEESSHHHHHHHHHHHTTSSE CS
         Usp  44 sgavsdadeeaeeeeleleeaeleadaakaaaeaggvkvevvveegdpaeeilevaeeedadl 106
                 s++ ++  ee+eeee++ + + +++  + +  ++ + ++e + e+ +  e  +e+ e++++dl
  CCD25342.1 225 SETDDEQTEEEEEEEEDVTDTDSDE--DDEDDDEDESDEESDEEQVSDIENDVEIDEAFNYDL 285
                 3333333333333333333333333..579999999999999999999999999999999997 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0069
                 E-SSHHHHHHHHHHHHHHHHCTSEEEEEEE CS
         Usp   9 vDgseeskkAlewAlelakargaelillhv 38 
                 +D s+es++Al +      ++g++l+++h 
  CCD25342.1 363 TDLSSESTYALTYMMGAVLNNGDTLYIVHW 392
                 79**************************95 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  16.7    0.0057        15     219     268 ..     226     276 ..     195     329 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0057
        RRN3 219 dlddeedeeleeelee.deddedddeddeesdlddlssdeeaeedeekdee 268
                 ++dde++ee+eee e+ +++d+d+d++d+++d +d++sdee+ +d e+d e
  CCD25342.1 226 ETDDEQTEEEEEEEEDvTDTDSDEDDEDDDEDESDEESDEEQVSDIENDVE 276
                 555555554444433332222222222233344444444444444333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2752  (0.153494); expected 358.6 (0.02)
Passed bias filter:                      763  (0.0425568); expected 358.6 (0.02)
Passed Vit filter:                       223  (0.0124379); expected 17.9 (0.001)
Passed Fwd filter:                        62  (0.00345808); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.15u 0.32s 00:00:01.47 Elapsed: 00:00:00.49
# Mc/sec: 2992.61
//
Query:       CCD25343.1  [L=464]
Description: hypothetical protein NDAI_0F00240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     3e-105  352.0   0.0   3.7e-105  351.7   0.0    1.1  1  PTPA      Phosphotyrosyl phosphate activator (PTPA) protein
  ------ inclusion threshold ------
        3.4    8.7   8.0        5.2    8.1   5.7    2.1  2  KCNQ2_u3  Unstructured region on Potassium channel subunit al


Domain annotation for each model (and alignments):
>> PTPA  Phosphotyrosyl phosphate activator (PTPA) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.7   0.0  4.1e-109  3.7e-105       1     301 []      24     321 ..      24     321 .. 0.94

  Alignments for each domain:
  == domain 1  score: 351.7 bits;  conditional E-value: 4.1e-109
                 -B----SCHHHHHHCCCHHHHHHHHHHHHHHHHHT............T-SS-..HHHHHHHHHHHHHCCCTS---SS--SSS-THHHHHHHHHHHHHHH CS
        PTPA   1 pakrileeedlekfkkSkayadilefisrlneavkgkkl....eeeeeases..vekllklLdeleelideippeeqpsRfGnkafrtwhdrleeraee 93 
                 p+kri++++ +++f++S a +++  f++r+ e v + ++    +  + +se   v+++++lL+el+++++++pp ++p+R+Gn+a+r+wh+++e ++++
  CCD25343.1  24 PVKRIFDSQTTQDFQSSIALQRLRFFLQRYIELVANVEIpphpD--SYVSEIlmVNSIIHLLNELSTIVQDTPPLKGPRRYGNLACRDWHSKIEVELPK 120
                 89*************************************65431..333333559******************************************** PP

                 HHHHHS-GGGGGG......HHHHHHHHHTTT-BTTTTEE-HHHHHHHHHHHHHHHHTT-STT....--HHHHHHHHHHHHHHHHHHHHHTT-EES---- CS
        PTPA  94 lleellpeelkkaelekaaieelkaYlkesfGnatrlDYGtGhElsFlafllcLeklgllkeeeeedeealvlkvfekYlelvrrLqstYtLepAgshG 192
                 lle+++p+   +      +i el++Y+ +sfG++trlDYGtGhElsF+af+ +L +lgl+     + + + +l +f+ Y++lvr+L++tYtLepAgshG
  CCD25343.1 121 LLEKAIPSPDLQ-----PSIIELNYYIANSFGSSTRLDYGTGHELSFMAFIAALDMLGLF----PDLTGKDLLIMFNAYYSLVRELILTYTLEPAGSHG 210
                 ******988554.....47*****************************************....35799999*************************** PP

                 ----SSS-SHHHHHHHHCSSS-G....GGGG-HHHHHHHTTT-HHHHHHHHHHHH--S-HHHH-HHHHHHHCC--.HHHHHHHHHHHHHHHTTT-HHHH CS
        PTPA 193 vwGLDDyqflpflfGsaQlvehkklkpksildaevveeyakeylYlsaiafinevKkgpfrehSpmLydisavkt.WekvnkGlikmYkaevLskfpvv 290
                 vwGLDD+++l++++Gs+Q  ++  l+pk+i+++++v++y++++lY+++i+f+ +vK+gpf+ehSp+Lydis+ ++ W+kv++GlikmY +evL+kfpvv
  CCD25343.1 211 VWGLDDHFHLAYILGSSQWLNNAPLTPKEITNSRLVKDYSTKNLYCQCIEFVLTVKSGPFAEHSPILYDISTSVSaWRKVQRGLIKMYMDEVLNKFPVV 309
                 **********************99***********************************************99999*********************** PP

                 TT--BBS.SSBS CS
        PTPA 291 qhflfGs.llpw 301
                 qhf+fG+ ++pw
  CCD25343.1 310 QHFWFGTgFYPW 321
                 ******966666 PP

>> KCNQ2_u3  Unstructured region on Potassium channel subunit alpha KvLQT2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.7   0.00057       5.2       7      53 ..     335     380 ..     330     423 .. 0.74
   2 ?    0.0   0.2       0.2   1.8e+03      41      73 ..     414     447 ..     391     455 .. 0.58

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00057
    KCNQ2_u3   7 HsPedsreekekeekitkivrssssmgqknfsapsaasesqcrPsts 53 
                 HsPed  +++++++  +++v++sss+++  +s p   ++s++ P  s
  CCD25343.1 335 HSPEDDDNNNNNNNNNNNLVQRSSSSTSTVTSRP-LPHTSTAFPQSS 380
                 ******9999999999999988888777777777.344445555555 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.2
    KCNQ2_u3  41 saasesqcrPstswqqqlqeeq.qrsawngssPv 73 
                 ++a+++  +P+t +  + ++++ +r++++g+s +
  CCD25343.1 414 KMARTTMPPPTTNFLTRPMHPSnTRTTRDGTSSI 447
                 2344444556666766666554145556777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3161.44
//
Query:       CCD25344.1  [L=329]
Description: hypothetical protein NDAI_0F00250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-60  205.2   0.0    1.9e-60  205.0   0.0    1.0  1  S-methyl_trans  Homocysteine S-methyltransferase
     0.0069   16.1   0.0      0.017   14.8   0.0    1.7  1  DUF4874         Domain of unknown function (DUF4874)


Domain annotation for each model (and alignments):
>> S-methyl_trans  Homocysteine S-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   0.0   2.1e-64   1.9e-60       1     268 []      18     322 ..      18     322 .. 0.84

  Alignments for each domain:
  == domain 1  score: 205.0 bits;  conditional E-value: 2.1e-64
                     EEB---SHHHHHHT.----STTH......HCCHHH.....-HHHHHHHHHHHHHHT-SEEE-TTTT--.....GG.T--HHHHH.HHHHHHHHHH CS
  S-methyl_trans   1 lilDGgmgteLerr.adlseelw......saellt.....rpelikeihrdyleaGadiieTnTyqas.....kikgleeeeeveelnraavela 78 
                     lilDGg gteLe+r +++++++w      + ++++     + e++k++++d+leaGa+i+ T Tyq+s     +++++++ +e  el+ + v++ 
      CCD25344.1  18 LILDGGQGTELENRgINVANPVWstipfvNDSFWSgqsskDREIVKQMFNDFLEAGAEILMTTTYQTSfksvsENTNIKTLKEYDELLTRIVNFS 112
                     79*************9999999944444433333244444779*************************87655333677889999********** PP

                     HHHHHHH....HEEEEE--HHHHCTS...-.--..--HHHHHHHHHHHHH.HHHHCT-SEEEEEEE--HHHHHHHHHHHT.T..--EEEEE-ECC CS
  S-methyl_trans  79 reaadeaaaplfvagsvGpygatlsd...g.yd.llsfeelveahreqir.alleagvDlllietipdlleakaavellaae..lpvwisftikd 165
                     r+++ e +   +++g++Gp+ga+++    g y  + +  +++e++++q+  ++ + + D++ +etip++ e+k ++++ +++  +p++i +++++
      CCD25344.1 113 RDCIGENK---YLIGCIGPWGAHICSeftGnYGeHPELIDYYEYFKPQLVnFVQNDDLDIIGFETIPNVYELKTILSWGTDIlpKPFYIGLSVHE 204
                     ****9984...7************9999977864599*************9************************99887767899*******98 PP

                     T.T.ETTS-BHHH.HHHHHCT-.....TEEEEEEES--GGGHHHHHHHHHTT--S-...EEEE---.S-----------....-........... CS
  S-methyl_trans 166 est.lrsGetleeavaalaaat.....qplavgvNCakpeelepllkelksetalpa..vivypnsagevydltpeewaesaee........... 241
                     +   lr+G+t+++++  + + +     + + +g+NC++  +  ++l++++ ++  p   +ivypns gevyd+ ++ w    +e           
      CCD25344.1 205 N-GvLRDGTTMSQVADIINSLSdklnpNLVLLGINCVSLAHSPDILDSIH-SNL-PDlpLIVYPNS-GEVYDTVKKIWLPPNDEtymswdevver 295
                     8.45*****9998555555555777755588******************4.443.444899****8.*****77777777766677777777766 PP

                     HHHTTEEEE---TT--HHHHHHHHH.. CS
  S-methyl_trans 242 wleaganiiGGCCgttpehIraiaeav 268
                     +l+aga+iiGGCC+ttp++I++i++av
      CCD25344.1 296 YLKAGARIIGGCCRTTPNDIKQISDAV 322
                     99*********************9986 PP

>> DUF4874  Domain of unknown function (DUF4874)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.9e-06     0.017      51     135 ..      59     144 ..      46     159 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.9e-06
     DUF4874  51 ldklekiletlrkagkkvilRfaYdtegkateeedasleqilrHieqlkpileenkdvIavvq..agfiGawGEwhssknlkdkesr 135
                  + ++++++ + +ag ++++  +Y+t+  +  +e+++++++++  e l+ i++  +d+I   +   g iG+wG    s+++ +  + 
  CCD25344.1  59 REIVKQMFNDFLEAGAEILMTTTYQTS-FKSVSENTNIKTLKEYDELLTRIVNFSRDCIGENKylIGCIGPWGAHICSEFTGNYGEH 144
                 45689**********************.7889999************************765522789*****99999888555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2412.98
//
Query:       CCD25345.1  [L=532]
Description: hypothetical protein NDAI_0F00260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1958  (0.109209); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.02u 0.35s 00:00:01.37 Elapsed: 00:00:00.48
# Mc/sec: 3357.54
//
Query:       CCD25346.1  [L=298]
Description: hypothetical protein NDAI_0F00270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2311.56
//
Query:       CCD25347.1  [L=610]
Description: hypothetical protein NDAI_0F00280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-11   44.2   0.2    2.3e-11   43.3   0.2    1.5  1  zf-primase       Primase zinc finger
     0.0087   16.0   0.0      0.026   14.5   0.0    1.8  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
  ------ inclusion threshold ------
      0.033   13.9   0.2      0.033   13.9   0.2    2.2  2  DUF5088          Domain of unknown function (DUF5088)


Domain annotation for each model (and alignments):
>> zf-primase  Primase zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.2   3.9e-15   2.3e-11       1      46 []     325     372 ..     325     372 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 3.9e-15
  zf-primase   1 GrskDlglCka.tk.kdgkkCgswvnkrkgeyCdfHvqsavkkarakR 46 
                 G+skDlg+C + +k ++  +C+++++++k++ C++H++ +++++ +kR
  CCD25347.1 325 GKSKDLGFCPIpNKiNESGTCHTPIDISKEDRCSYHQEIRFRNNGSKR 372
                 9**********55566999***************************99 PP

>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.4e-06     0.026       5      54 ..     239     288 ..     232     315 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.4e-06
                      EEEEEEEEEEETTEEEEEEEETTEEEEEEEETHHHHHHHTTS-TTSEEEE CS
  tRNA_anti-codon   5 GrvtsisdrsggkvifidlrDgtgriqvvlfreeatklaenlkeGdvvrv 54 
                      G ++ +s  + +k++ +++ D   ++ +++f++ a + + nl++Gd++ +
       CCD25347.1 239 GSIKFTSSDKPKKYFKFTISDFKYNVDIFIFDKHAVERYYNLRIGDIIAI 288
                      445555567889************************************98 PP

>> DUF5088  Domain of unknown function (DUF5088)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   2.0      0.24   1.5e+03      74     143 ..     123     192 ..     106     213 .. 0.60
   2 ?   13.9   0.2   5.6e-06     0.033       3      57 ..     235     289 ..     233     330 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.24
     DUF5088  74 ntfsetkyfdvkEisvkeilkiellkkkekvkeiFttvvGkveYlsvllrks....angkyeeYvllkvsgikv 143
                 nt   t yf  k   vk+  +ie  +++++ k   +  +G ++ +s + + +    a+++ eeY +l++++ ++
  CCD25347.1 123 NT---TSYFMEKFQHVKKKEEIENVRNEKMLKARVHMFQG-LNKSSKIHKIEyqpeAANEVEEYSMLRIQKRYI 192
                 44...44555555555555556666666666555444444.344555555544455788899999999987766 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.6e-06
     DUF5088   3 vilktrlstvsssgslplfffiilstsaglvkvvvW.kealrkysslkvGDiivik 57 
                 + +k  ++  +ss ++  +f + +s  +  v ++++ k a+ +y+ l++GDii i 
  CCD25347.1 235 ITQKGSIKF-TSSDKPKKYFKFTISDFKYNVDIFIFdKHAVERYYNLRIGDIIAIL 289
                 677777765.556668899999999999999998874789*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1352  (0.0754086); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.38
# Mc/sec: 4774.47
//
Query:       CCD25348.1  [L=1554]
Description: hypothetical protein NDAI_0F00290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.013   15.8   0.8      0.013   15.8   0.8   21.0 22  Csm1_N        Csm1 N-terminal domain
       0.15   11.5   6.1        8.4    5.9   0.1    4.9  3  LINES_C       Lines C-terminus
       0.16   11.7   6.1          8    6.3   0.1    4.1  3  DUF3945       Protein of unknown function (DUF3945)
        3.9    8.0  12.0        3.5    8.1   0.5    4.7  3  DcpS_C        Scavenger mRNA decapping enzyme C-term binding


Domain annotation for each model (and alignments):
>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.7      0.28   1.3e+03      23      68 ..      97     142 ..      92     144 .. 0.87
   2 ?    3.6   1.7     0.018        82      28      62 ..     142     178 ..     139     200 .. 0.52
   3 ?    2.9   0.3      0.03   1.4e+02      31      64 ..     226     259 ..     221     263 .. 0.85
   4 ?    2.0   1.0     0.059   2.6e+02      30      60 ..     285     315 ..     278     320 .. 0.67
   5 ?   -0.5   5.2      0.37   1.6e+03      23      52 ..     318     347 ..     296     359 .. 0.79
   6 ?   -1.4   0.3      0.68   3.1e+03      32      53 ..     370     391 ..     364     427 .. 0.68
   7 ?    2.9   1.6     0.032   1.4e+02      35      66 ..     429     460 ..     421     464 .. 0.85
   8 ?   -5.0   5.2         4   1.8e+04      39      59 ..     529     542 ..     484     574 .. 0.63
   9 ?   -3.8   4.8       3.8   1.7e+04      41      57 ..     620     640 ..     582     660 .. 0.59
  10 ?    2.2   1.3     0.053   2.4e+02      29      53 ..     668     692 ..     662     699 .. 0.76
  11 ?    4.1   0.6     0.013        59      29      56 ..     715     742 ..     710     754 .. 0.60
  12 ?    1.9   1.7     0.066     3e+02      42      69 ..     810     837 ..     793     852 .. 0.59
  13 ?    0.5   5.0      0.17   7.8e+02      34      65 ..     879     910 ..     865     912 .. 0.74
  14 ?   15.8   0.8   2.9e-06     0.013      13      66 ..     911     964 ..     910     972 .. 0.93
  15 ?    0.4   0.1      0.19   8.7e+02      21      47 ..    1007    1033 ..     999    1061 .. 0.71
  16 ?    3.0   6.5     0.028   1.3e+02      22      69 ..    1083    1130 ..    1074    1131 .. 0.86
  17 ?    2.9   2.6      0.03   1.4e+02      31      62 ..    1163    1194 ..    1147    1202 .. 0.74
  18 ?   -1.9   3.5         1   4.5e+03      39      69 ..    1196    1226 ..    1188    1241 .. 0.70
  19 ?    0.4   0.9       0.2   8.7e+02      39      67 ..    1238    1266 ..    1225    1268 .. 0.86
  20 ?    2.3   1.8     0.047   2.1e+02      36      55 ..    1266    1285 ..    1255    1302 .. 0.57
  21 ?   -2.0   1.3         1   4.6e+03      37      59 ..    1305    1327 ..    1287    1337 .. 0.65
  22 ?   -2.9   0.5         2   8.9e+03      40      53 ..    1344    1357 ..    1319    1372 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.28
      Csm1_N  23 sklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleerrkkqe 68 
                 +klv E +     ++  + ei  +k  l++++ +   le r++k e
  CCD25348.1  97 EKLVSEKQKEFDSNDALNSEITLIKYDLEAMQRDHTTLEARERKTE 142
                 6899999999999999999************999999999988765 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.018
      Csm1_N  28 ENsvLsqkletkd..qeiesLkeqlaeleekvkelee 62 
                 EN++ + kle +d  +e ++Lkeq+   e k++++ +
  CCD25348.1 142 ENVLEQSKLELQDslTENSALKEQIGVFEGKLDSMTQ 178
                 5555555555555333555555555555555444333 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.03
      Csm1_N  31 vLsqkletkdqeiesLkeqlaeleekvkeleerr 64 
                  L+ +l+  + ei sLk ++a+l+  +++l ++ 
  CCD25348.1 226 RLQDQLQIVSSEILSLKSEIATLKYMNESLSTDL 259
                 588999999**************99988887765 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.059
      Csm1_N  30 svLsqkletkdqeiesLkeqlaeleekvkel 60 
                 +++++ +e  ++ei s k+q++ l +k+ e+
  CCD25348.1 285 TLKQRVNELLHNEIASYKKQIERLTSKNLET 315
                 4555556667778888888888887776555 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.37
      Csm1_N  23 sklvhENsvLsqkletkdqeiesLkeqlae 52 
                 +k+++E + L++kl + ++e ++Lk ++++
  CCD25348.1 318 KKIIQELVDLKEKLVNSEKECNELKSTVDK 347
                 689999999999999999999999999986 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 0.68
      Csm1_N  32 LsqkletkdqeiesLkeqlael 53 
                 L+++l + ++   +L++q+++ 
  CCD25348.1 370 LRRQLVKEKRHKDTLQRQVESF 391
                 5555555555556666666654 PP

  == domain 7  score: 2.9 bits;  conditional E-value: 0.032
      Csm1_N  35 kletkdqeiesLkeqlaeleekvkeleerrkk 66 
                 + + kd+e+ +L++++ + e+ ++el  +r++
  CCD25348.1 429 ERDIKDRELTNLQKKISNNEQFNDELLRQRSD 460
                 56889***************999999888776 PP

  == domain 8  score: -5.0 bits;  conditional E-value: 4
      Csm1_N  39 kdqeiesLkeqlaeleekvke 59 
                         ++ +++le + +e
  CCD25348.1 529 T-------RQLVQTLERQEQE 542
                 1.......1122222222222 PP

  == domain 9  score: -3.8 bits;  conditional E-value: 3.8
      Csm1_N  41 qeiesLkeq....laeleekv 57 
                 +e++s+k+q    l+ele+k+
  CCD25348.1 620 NELSSMKQQhvkvLEELENKI 640
                 233333333211122233333 PP

  == domain 10  score: 2.2 bits;  conditional E-value: 0.053
      Csm1_N  29 NsvLsqkletkdqeiesLkeqlael 53 
                 N +L++ +++ +++i++L++ lae 
  CCD25348.1 668 NNLLKEYVDKLENKIKTLEQDLAEN 692
                 7788888888888888888887765 PP

  == domain 11  score: 4.1 bits;  conditional E-value: 0.013
      Csm1_N  29 NsvLsqkletkdqeiesLkeqlaeleek 56 
                  sv +qk++  d+ei++Lk + ++le k
  CCD25348.1 715 LSVAEQKISFLDKEISNLKSKNKNLEDK 742
                 3455555555555555555555555544 PP

  == domain 12  score: 1.9 bits;  conditional E-value: 0.066
      Csm1_N  42 eiesLkeqlaeleekvkeleerrkkqeE 69 
                  +e+L++q  +l+ ++ke +e+ + + E
  CCD25348.1 810 NLEELQNQFRTLRRELKEVQEDLDMKTE 837
                 3444555555555555555444444433 PP

  == domain 13  score: 0.5 bits;  conditional E-value: 0.17
      Csm1_N  34 qkletkdqeiesLkeqlaeleekvkeleerrk 65 
                  +l+ k++e+++Lk +l e  ek++ +e++++
  CCD25348.1 879 SQLQGKEKELNELKSKLVEKTEKLQMAENENS 910
                 36778999999999999999999998887765 PP

  == domain 14  score: 15.8 bits;  conditional E-value: 2.9e-06
      Csm1_N  13 erldsAdllvsklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleerrkk 66 
                 e++++A +l + +v+EN++ + + +  ++ +++L++ ++++++++  +e+++++
  CCD25348.1 911 EKINNAIVLLQTMVEENTTFKDAFKHFKNSLSRLRQAINSIQQQSLVIESNYNT 964
                 789*****************************************9988887765 PP

  == domain 15  score: 0.4 bits;  conditional E-value: 0.19
      Csm1_N   21 lvsklvhENsvLsqkletkdqeiesLk 47  
                  lv  l+hE  +L+ +l++ +  + + +
  CCD25348.1 1007 LVRSLIHEKKMLALNLNSANYSLRRAR 1033
                  8999********999887766665555 PP

  == domain 16  score: 3.0 bits;  conditional E-value: 0.028
      Csm1_N   22 vsklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleerrkkqeE 69  
                  v++ ++ N +Ls +l   + ++e L+++++el+ kv+e e++ +  +E
  CCD25348.1 1083 VENCTKVNETLSSQLADMQVKLEPLEQEINELKLKVAEKEQHLNICQE 1130
                  556667799****************************99998876666 PP

  == domain 17  score: 2.9 bits;  conditional E-value: 0.03
      Csm1_N   31 vLsqkletkdqeiesLkeqlaeleekvkelee 62  
                  +L+++let  +e  +L  + + l+++ +e  +
  CCD25348.1 1163 TLEEQLETVRTENAQLTDRFDRLKKQAHEKLD 1194
                  57777777777777777777777777766655 PP

  == domain 18  score: -1.9 bits;  conditional E-value: 1
      Csm1_N   39 kdqeiesLkeqlaeleekvkeleerrkkqeE 69  
                   ++   +L  q++el+e   +le++ +++ E
  CCD25348.1 1196 AKTMQINLTTQINELNETKVNLEKSLQQEIE 1226
                  5555556777777777777777777776655 PP

  == domain 19  score: 0.4 bits;  conditional E-value: 0.2
      Csm1_N   39 kdqeiesLkeqlaeleekvkeleerrkkq 67  
                   ++ei +L+++l++ ++ ++ele++ +++
  CCD25348.1 1238 ESEEIIRLRAELEKSNNFSNELEKKVEDA 1266
                  6799*****************99998775 PP

  == domain 20  score: 2.3 bits;  conditional E-value: 0.047
      Csm1_N   36 letkdqeiesLkeqlaelee 55  
                   ++ ++eiesLk +l+++++
  CCD25348.1 1266 AKKFKNEIESLKSELQSVKA 1285
                  22334556666666665554 PP

  == domain 21  score: -2.0 bits;  conditional E-value: 1
      Csm1_N   37 etkdqeiesLkeqlaeleekvke 59  
                  + kd+ ie++k++ ++  ek ke
  CCD25348.1 1305 REKDELIEQMKKEFKTKLEKEKE 1327
                  45666677777777654444443 PP

  == domain 22  score: -2.9 bits;  conditional E-value: 2
      Csm1_N   40 dqeiesLkeqlael 53  
                  +  ie+Lk++ +e 
  CCD25348.1 1344 SANIEELKKKWEEE 1357
                  34455555554443 PP

>> LINES_C  Lines C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.056   2.5e+02       9      20 ..     302     313 ..     302     313 .. 0.92
   2 ?    5.9   0.1    0.0019       8.4       2      20 ..     630     648 ..     630     649 .. 0.92
   3 ?    3.2   0.2     0.013        60       4      20 ..     940     956 ..     938     957 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.056
     LINES_C   9 rlaIerLhrknL 20 
                 +++IerL +knL
  CCD25348.1 302 KKQIERLTSKNL 313
                 689********9 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0019
     LINES_C   2 mscLirLrlaIerLhrknL 20 
                 +++L++L ++I +L++ +L
  CCD25348.1 630 VKVLEELENKIKTLQKSQL 648
                 69*************9988 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.013
     LINES_C   4 cLirLrlaIerLhrknL 20 
                  L+rLr+aI+  ++  L
  CCD25348.1 940 SLSRLRQAINSIQQQSL 956
                 69*********999877 PP

>> DUF3945  Protein of unknown function (DUF3945)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3    0.0025        11      10      43 ..     616     648 ..     610     651 .. 0.81
   2 ?    6.3   0.1    0.0018         8       1      14 [.    1041    1054 ..    1041    1056 .. 0.91
   3 ?   -2.2   0.2      0.77   3.4e+03      27      42 ..    1108    1123 ..    1094    1123 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0025
     DUF3945  10 DkeTnelvylradeiripdeikgvkLteeqkqdL 43 
                  ++Tnel +++++++++ +e+++ k+ + qk +L
  CCD25348.1 616 ERLTNELSSMKQQHVKVLEELEN-KIKTLQKSQL 648
                 689***************99976.4666666655 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0018
     DUF3945    1 EefpsfvsiDkeTn 14  
                  E+fpsfv+iD++++
  CCD25348.1 1041 EKFPSFVKIDQQSK 1054
                  89*********987 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.77
     DUF3945   27 pdeikgvkLteeqkqd 42  
                   +ei++ kL  ++k++
  CCD25348.1 1108 EQEINELKLKVAEKEQ 1123
                  589******9999985 PP

>> DcpS_C  Scavenger mRNA decapping enzyme C-term binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.5   0.00079       3.5      39      79 ..     504     544 ..     473     555 .. 0.82
   2 ?    3.4   0.7     0.022     1e+02      46      76 ..     620     650 ..     607     683 .. 0.84
   3 ?   -0.1   0.3      0.29   1.3e+03      46      76 ..    1297    1328 ..    1290    1345 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00079
                 EEESS..---SGGG--TTTTTHHHHHHHHHHHHHHHTT-T-EE CS
      DcpS_C  39 vipkr..dikslrdLtkehlpllkemrekakkvieekynevda 79 
                 +i+kr  +++++++L++++++ll++ r+ ++++ +++ ++  +
  CCD25348.1 504 IISKRllHFQNVKELQQKNMELLRTTRQLVQTLERQEQEQ--Q 544
                 5888899*********************999887776643..3 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.022
                 -SGGG--TTTTTHHHHHHHHHHHHHHHTT-T CS
      DcpS_C  46 kslrdLtkehlpllkemrekakkvieekyne 76 
                 ++l +++++h+++l+e+++k+k++ +++ ++
  CCD25348.1 620 NELSSMKQQHVKVLEELENKIKTLQKSQLTS 650
                 5677889****************99888755 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.29
                  -SGGG.--TTTTTHHHHHHHHHHHHHHHTT-T CS
      DcpS_C   46 kslrd.Ltkehlpllkemrekakkvieekyne 76  
                  k+l++ ++ e+ +l+++m+++ k+ +e+++++
  CCD25348.1 1297 KDLKEsFKREKDELIEQMKKEFKTKLEKEKET 1328
                  444433699999***********999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3958  (0.22076); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                       220  (0.0122706); expected 17.9 (0.001)
Passed Fwd filter:                        85  (0.00474092); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 3.61u 0.43s 00:00:04.04 Elapsed: 00:00:00.90
# Mc/sec: 5206.78
//
Query:       CCD25349.1  [L=187]
Description: hypothetical protein NDAI_0F00300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-33  112.6   0.5    8.3e-33  112.0   0.5    1.3  1  ubiquitin       Ubiquitin family
      2e-30  104.4  10.4      2e-30  104.4  10.4    1.7  2  Ribosomal_L40e  Ribosomal L40e family
    2.5e-14   52.9   0.4    3.9e-14   52.2   0.4    1.2  1  Rad60-SLD       Ubiquitin-2 like Rad60 SUMO-like
    5.8e-05   23.5   0.2     0.0002   21.7   0.2    1.8  1  Ubiquitin_2     Ubiquitin-like domain
     0.0062   16.4   0.0      0.012   15.5   0.0    1.5  1  TBK1_ULD        TANK binding kinase 1 ubiquitin-like domain
     0.0064   16.8   0.1       0.01   16.1   0.1    1.3  1  Ubiquitin_5     Ubiquitin-like domain
  ------ inclusion threshold ------
      0.011   15.9   0.1      0.024   14.8   0.1    1.6  1  Rad60-SLD_2     Ubiquitin-2 like Rad60 SUMO-like
      0.047   14.2   0.1      0.064   13.8   0.1    1.4  1  DUF2407         DUF2407 ubiquitin-like domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.0   0.5   3.7e-36   8.3e-33       2      72 .]      63     133 ..      63     133 .. 0.99

  Alignments for each domain:
  == domain 1  score: 112.0 bits;  conditional E-value: 3.7e-36
                 EEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin   2 tvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72 
                 +vktl+gk+itleve+sdt++++K ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  CCD25349.1  63 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 133
                 8*******************************************************************986 PP

>> Ribosomal_L40e  Ribosomal L40e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.4       4.9   1.1e+04      33      34 ..      48      49 ..      46      58 .. 0.53
   2 !  104.4  10.4     9e-34     2e-30       1      50 []     137     186 ..     137     186 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.9
  Ribosomal_L40e 33 Cr 34
                    C+
      CCD25349.1 48 CC 49
                    33 PP

  == domain 2  score: 104.4 bits;  conditional E-value: 9e-34
  Ribosomal_L40e   1 iepsLrqLAqKyncdKmiCrkCYArlpprAtnCrkkkCghsnnlrpKKkl 50 
                     iepsL++LA+KyncdK++CrkCYArlpprAtnCrk+kCgh+n+lrpKKkl
      CCD25349.1 137 IEPSLKVLASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKL 186
                     8***********************************************96 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.4   1.7e-17   3.9e-14       4      72 .]      63     130 ..      63     130 .. 0.98

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1.7e-17
                 EEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD   4 ilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72 
                 ++k+ +gk+++++V+++ t+ +++++ ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  CCD25349.1  63 FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 130
                 699********************************.******************************986 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.2     9e-08    0.0002      17      80 ..      73     128 ..      56     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.7 bits;  conditional E-value: 9e-08
                  EEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2  17 errfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80 
                  +  +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   CCD25349.1  73 TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 128
                  5567899************************99........5667899*********9999995 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   5.4e-06     0.012      19      53 ..      76     110 ..      64     130 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 5.4e-06
    TBK1_ULD  19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53 
                 +++ +t++++  +++++  i++++Q l+f g++l 
  CCD25349.1  76 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 110
                 67899***************************973 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   4.7e-06      0.01      32      92 ..      70     131 ..      54     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.7e-06
  Ubiquitin_5  32 kkklletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLk 92 
                  k  +le++ + t +++ ski ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+
   CCD25349.1  70 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLR 131
                  5556777777788999999********************************99987546666 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   1.1e-05     0.024      11      88 ..      68     131 ..      56     155 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
                  TS-EEEEEEEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE- CS
  Rad60-SLD_2  11 dGsDigpvkfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvvr 88 
                   G+ +  ++ ++++t++++k k+     +dke  p  +++ +li aGk Le+ +tl++++++        +++H+v+r
   CCD25349.1  68 TGK-TITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVLR 131
                  566.6677788888888888888.....4566644..34559****************955433......45777665 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   2.8e-05     0.064      14      67 ..      72     121 ..      55     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.8e-05
     DUF2407  14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslkl 67 
                 ++L+++  ++ t+ ++k  i ++    +   + rLI+aG+ Led  +l++   +
  CCD25349.1  72 ITLEVE--SSDTIDNVKSKIQDKE--GIPPDQQRLIFAGKQLEDGRTLSDYNIQ 121
                 667777..7789999999999987..67777789*************9975443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1392.80
//
Query:       CCD25350.1  [L=1259]
Description: hypothetical protein NDAI_0F00310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-28   97.3   0.6    1.6e-27   95.9   0.4    1.9  2  Response_reg  Response regulator receiver domain
    8.6e-27   93.9   0.4    2.9e-20   72.9   0.1    2.7  2  HATPase_c     Histidine kinase-, DNA gyrase B-, and HSP90-lik
    2.1e-11   43.7   1.1    6.3e-11   42.2   0.2    2.3  2  HisKA         His Kinase A (phospho-acceptor) domain
    0.00054   19.6   7.8    0.00054   19.6   7.8    3.3  3  SR-25         Nuclear RNA-splicing-associated protein
     0.0011   19.4   0.2       0.66   10.4   0.0    2.5  2  HAMP          HAMP domain
  ------ inclusion threshold ------
        8.4    5.7  21.3       0.14   11.5  13.4    2.0  2  SelP_N        Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.7   8.2e+03      32      53 ..     647     668 ..     621     669 .. 0.81
   2 !   95.9   0.4   5.4e-31   1.6e-27       1     111 [.    1131    1247 ..    1131    1248 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.7
                   HHHHHHHHHHHHESEEEEESSC CS
  Response_reg  32 gkealellkeekvdlillDinm 53 
                   +k++l+ +  ek d +++D+ +
    CCD25350.1 647 SKNVLKRTTLEKRDFCITDVAL 668
                   5677888888899999999987 PP

  == domain 2  score: 95.9 bits;  conditional E-value: 5.4e-31
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH.....HHHHESEEEEESSCSSSEHHHHHHHHHHCT.TTSEEEEEESSTSHHHHHHH CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealell.....keekvdlillDinmpgmdGlellkeireed.pelpviiltahseeedavea 89  
                    +l+++D+++++e+++++l+ eg+++++ a dg+ea++++     +++++++i++D++mp++dGl  +k+ir++  ++ p+++lta +++++++e+
    CCD25350.1 1131 ILVAEDNHVNQEVIKRMLNLEGVNKIDLACDGQEAFDKVktlseQNDSYNIIFMDVQMPKVDGLLSTKMIRKDLhYDHPIVALTAFADDSNIKEC 1225
                    89*************************************555544444**********************66555******************** PP

                    HHCTESEEEESSG-HHHHHHHH CS
  Response_reg   90 lkagaddflsKpfdpeeLlkal 111 
                    l+ g+++flsKp+++ +L++++
    CCD25350.1 1226 LESGMNGFLSKPIKRPKLRTII 1247
                    *******************987 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.2e-07    0.0024       1      33 [.     701     733 ..     701     773 .. 0.85
   2 !   72.9   0.1   9.5e-24   2.9e-20      38     111 ..     885     959 ..     860     960 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 8.2e-07
                 EHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE CS
   HATPase_c   1 gdekrLrqiisnlvdNavkfatkageieveika 33 
                 gd+ r+ qi+ nlv+Na+kf++ +g++ v++k 
  CCD25350.1 701 GDSNRIIQIVMNLVSNALKFTPVDGKVNVKVKL 733
                 799*****************8899999999885 PP

  == domain 2  score: 72.9 bits;  conditional E-value: 9.5e-24
                 EEEEEEESSSSSTTHHHTGTCSTTCH.HCSTCHTSTSSSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEEESS CS
   HATPase_c  38 lvisveDnGiGipkedlkklfekfsq.ddstkrggggtGlGlsivkklvelmgGeiwvesepgrGttftftlple 111
                 ++isveD+G+Gi+k  ++ +f++f+q d++ +r++ggtGlGlsi+++l+++m+G+++++se g G+tftft+pl+
  CCD25350.1 885 IQISVEDTGPGIDKTLQESVFQPFVQgDQTLSRQYGGTGLGLSICRQLANMMHGTMKLKSEVGVGSTFTFTVPLK 959
                 689***********************99999999***************************************97 PP

>> HisKA  His Kinase A (phospho-acceptor) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.2   2.1e-14   6.3e-11       2      63 ..     588     648 ..     587     650 .. 0.91
   2 ?   -2.4   0.0       1.7   5.1e+03      27      61 ..    1116    1150 ..    1112    1151 .. 0.74

  Alignments for each domain:
  == domain 1  score: 42.2 bits;  conditional E-value: 2.1e-14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHC..T-HSSCHHHHHHHHHHHHHHHHHHHHHHHHCC CS
       HisKA   2 lgrflagvaHELrtPLsailgnaeaLkregklteelkeyletiesearrldhlvedlLdlsr 63 
                 ++ f+a+++HELrtPL++ilg++ + ++e     + +  l+ i ++++ l+h++ +lL++s+
  CCD25350.1 588 KTVFIANISHELRTPLNGILGMTAISMEE-TDISKIRSSLKLIFRSGELLLHILTELLTFSK 648
                 678**********************6554.46689999**********************98 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
                  HHC..T-HSSCHHHHHHHHHHHHHH.HHHHHHHHHH CS
       HisKA   27 Lkregklteelkeyletiesearrl.dhlvedlLdl 61  
                  L+++ + +e+ ++++++++ e +++ +++++++L l
  CCD25350.1 1116 LSES-NKDEDPAQNIKILVAEDNHVnQEVIKRMLNL 1150
                  5443.4579999999999999998866777877766 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   3.2       1.1   3.2e+03       6      42 ..     382     417 ..     376     451 .. 0.48
   2 ?   -3.5   7.4       2.2   6.5e+03       9      76 ..     780     845 ..     763     862 .. 0.38
   3 !   19.6   7.8   1.8e-07   0.00054      11     182 ..     982    1150 ..     973    1163 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.1
       SR-25   6 srsrsreergeekkrkksskdssrsssasksqsrkas 42 
                 srs sr++  +  +r ++s+ ++rss++s +q   ++
  CCD25350.1 382 SRSVSRNNSLKLPSR-NTSHYRNRSSASSVQQYTGEK 417
                 555555322222222.223333333333333333333 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.2
       SR-25   9 rsreergeekkrkksskdssrsssasksqsrkassasekeeerskekkkkkrrrssssssssssssss 76 
                 ++ ++ ++ k   +s  + + + sa +  ++k ++ +++e+e+  + + +  +++ s  ++ s  s+s
  CCD25350.1 780 NNSSSTTSGKDTTNSETSFEDEKSADDLDDEKIAT-KDAENENT-DDTENLDEQTDSVCDNISLVSTS 845
                 22222333333333333333333333333333322.21221222.22222222223333333333333 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 1.8e-07
       SR-25   11 reergeekkrkksskdssrsssasksqsrkassasekeeerskekkkkkrrrssssssssssssssssssssssssddrkkrgkkkdkkkkkkkkkk 107 
                  r++r+   k k +++ +s++s+as+ +    +  ++    +++e+ k+ +++s +ss ssss  ++s  s  s++ ++ + r+++ ++ ++++ + k
  CCD25350.1  982 RKNRK--VKFKLARSIRSKKSRASTVTFGTVTDLNH--VPENEEEIKNGSQASVGSSGSSSSDGEESNNSNNSTTHHS-EDRTNTSENTNNNNIHEK 1073
                  22222..22222222222333333333333333332..2344555555666666666666666666555544444333.333333333333333323 PP

       SR-25  108 kkkkekkkakekakaeaaaaealpgpsldqwqkeaeeedGPvltDeqksr..iqamkPltkeewdaRqsviRkvvDP 182 
                  ++k++  +++++++++ +   +l  p l+    +++  + Pvl +  k     q  k l  e+    q vi+++++ 
  CCD25350.1 1074 EHKHKHEHTHNHSHNHGDYPVSLDRPFLQSTGTATSSRNVPVLSESNKDEdpAQNIKILVAEDNHVNQEVIKRMLNL 1150
                  344444444444555566777788999***99999999******9999763378899***************98765 PP

>> HAMP  HAMP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0038        11       2      23 ..     351     372 ..     351     391 .. 0.84
   2 !   10.4   0.0   0.00022      0.66      34      52 ..     539     557 ..     519     558 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0038
                 HHHTTHHHHHHHHHHHHHHTTT CS
        HAMP   2 larrilrPLrrLaraarriaaG 23 
                 la++ ++P+ rL +a++ i++G
  CCD25350.1 351 LAHWAVKPIVRLQKATELISEG 372
                 799**************99999 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00022
                 SSHHHHHHHHHHHHHHHHH CS
        HAMP  34 rDEiGeLarafNaMldrLr 52 
                  DE+ +L  +fN+M d+L 
  CCD25350.1 539 SDELSDLTDTFNTMTDALD 557
                 6****************97 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.0       1.5   4.6e+03     164     186 ..     781     803 ..     758     835 .. 0.36
   2 ?   11.5  13.4   4.7e-05      0.14     150     206 ..    1034    1089 ..    1012    1112 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.5
      SelP_N 164 ckevtkaaeekpaeaeekteheh 186
                 ++++t+  +++++++ + +++++
  CCD25350.1 781 NSSSTTSGKDTTNSETSFEDEKS 803
                 22222122222222211111111 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.7e-05
      SelP_N  150 CGnCslesseaeeeckevtkaaeekpaeaeektehehahshkqghkhhekhghhHke 206 
                   G  s   +e++++++++t+++e++++++e++++++ ++++ ++hkh+++h+h H++
  CCD25350.1 1034 SGSSSSDGEESNNSNNSTTHHSEDRTNTSENTNNNNIHEKE-HKHKHEHTHNHSHNH 1089
                  45555666777778888888899999888666655555443.444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1787  (0.0996709); expected 358.6 (0.02)
Passed bias filter:                      577  (0.0321825); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.46
# Mc/sec: 8301.18
//
Query:       CCD25351.1  [L=307]
Description: hypothetical protein NDAI_0F00320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-90  302.7   0.0    2.2e-90  302.5   0.0    1.0  1  Pantoate_ligase  Pantoate-beta-alanine ligase


Domain annotation for each model (and alignments):
>> Pantoate_ligase  Pantoate-beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.5   0.0   1.2e-94   2.2e-90       1     265 [.       2     305 ..       2     306 .. 0.87

  Alignments for each domain:
  == domain 1  score: 302.5 bits;  conditional E-value: 1.2e-94
                      EEEESHHHHHHHHHHHH....HTT-EEEEEEE-SS-GHHHHHHHHHHHHHSSEEEEEEEEEGGGSSTTSCTTTSEEEHHHHHHHHHHTT-SEEE CS
  Pantoate_ligase   1 kiiktvaelrellkelr....kegkkvglVpTmGaLHeGHlsLvkaakeendvvvvSiFvNplqFgpkedlekYPrtleaDlelleeagvdlvF 90 
                      ki++tv+e+re+ +++       g++vg+V+TmG+LHeGH sL++++ ++n+++vvSiFvNp qF+p+edl+kYPrt+++D+++l ++gv+++F
       CCD25351.1   2 KILHTVEEVREWRNNVItnggGGGSSVGFVATMGCLHEGHKSLISQSLKDNEFTVVSIFVNPSQFAPTEDLDKYPRTMDEDITMLVSLGVNILF 95 
                      5899********88876444223456******************************************************************** PP

                      ---HHHHST............EEEEECSGGCSTHHHHSTTHHHHHHHHHHHHHHHHT-SEEEEEGGGHHHHHHHHHHHHHTT-SSEEEEEEEEB CS
  Pantoate_ligase  91 aPsveemyp............ttvevkelsevlegasrpghFrGVatvvtkLfnivqpdrayfGqKDaqqlavirrlvkdlnlpveivavpivR 172
                      aP+++ myp              v+v +lse+leg++rp++FrGVatvv+kL+niv+p++ayfGqKD+qq++v+ +++k+l +++++v++pi+R
       CCD25351.1  96 APNAHVMYPqgiplnveeqrgPFVTVLGLSEMLEGKTRPNFFRGVATVVMKLLNIVSPNVAYFGQKDIQQFIVLDTMCKELFVNTKLVMMPIIR 189
                      ********9999999999999667779******************************************************************* PP

                      ETT.SEBTTGGGGGS-HHHHHHTTHHHHHHHHHH.....BHHHHHHHHHHHHH...THTTEEEEEEEEEETTTSS........BSSB.....SE CS
  Pantoate_ligase 173 eed.gLAlSSRNkyLseeerkaAlvlykaLkaak.....eaealkeaakeele...eeelekadyveivdaetleel......eleee....kk 247
                      +e+ gLAlSSRNkyL ee+ k A+++y+ Lk+ +     + e++ +++++  +   +++  ++dy++i+d +tl+e+      +   +     +
       CCD25351.1 190 DEKsGLALSSRNKYLCEESLKIASNIYRGLKEGQlhvgrSREDIMKSIEDVWQpfiDSGDFEVDYISIADFKTLKEVdtvptrT---TttqtPN 280
                      7654******************************98877444444444443333335554468*************98886542...1344577 PP

                      EEEEEEEEET.......TEEEEEEE CS
  Pantoate_ligase 248 avllvaakvg.......kvrLiDni 265
                      +vl++a++++        vrLiDni
       CCD25351.1 281 VVLSCAIYLKdransntVVRLIDNI 305
                      *********666666669******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       428  (0.0238719); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2239.92
//
Query:       CCD25352.1  [L=795]
Description: hypothetical protein NDAI_0F00330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-46  157.6   1.7    1.7e-46  157.6   1.7    3.0  3  Ndc80_HEC        HEC/Ndc80p family
    1.1e-11   44.7   3.2    1.1e-11   44.7   3.2    5.9  5  DUF5595          Domain of unknown function (DUF5595)
  ------ inclusion threshold ------
       0.25   11.7   7.1       0.14   12.4   2.0    3.2  2  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm


Domain annotation for each model (and alignments):
>> Ndc80_HEC  HEC/Ndc80p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   1.0      0.63   3.8e+03      36      55 ..      24      43 ..       7      95 .. 0.57
   2 !  157.6   1.7   2.8e-50   1.7e-46      14     143 ..     165     299 ..     146     310 .. 0.89
   3 ?   -2.3   0.5      0.51     3e+03      38      58 ..     464     485 ..     431     533 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.63
   Ndc80_HEC 36 sfqseliqellefLkennfe 55
                + q++l++++ +f +++n +
  CCD25352.1 24 QQQQHLQSQIPQFASSSNIT 43
                33333333444443333333 PP

  == domain 2  score: 157.6 bits;  conditional E-value: 2.8e-50
   Ndc80_HEC  14 sffsesekaasverDprplrdksfqseliqellefLkennfe....hsisaktlksPsqkdfssifkfLykrldpsyefq.kkieeevvkilkelrYPf 107
                 ++ s++ ++++++rDprplrdk+fq++++qe++++L en+f+    h+is+k+l++P+qk f+ +fk+Ly+rld +y+f  k+ie+ev+ +lk+l+YP+
  CCD25352.1 165 QSKSTTGTTTTTNRDPRPLRDKNFQNAIQQEIFDYLIENKFDlqtnHPISIKSLRQPTQKFFIILFKWLYNRLDQGYSFVsKSIENEVYHLLKNLQYPY 263
                 5566777788999******************************************************************99****************** PP

   Ndc80_HEC 108 aesisKsqlaAvgtphtwptllaaLhWlvelaklle 143
                  e+i++sq++Avg+  +w ++l+++hWlv+++  le
  CCD25352.1 264 LETINRSQISAVGGGTNWYKFLGMIHWLVKININLE 299
                 *****************************8654443 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.51
   Ndc80_HEC  38 qseliqellefLkennfe.hsi 58 
                 ++  i++l + L+++nf+ ++i
  CCD25352.1 464 IELEISNLEKKLNDKNFSiENI 485
                 3333444444455555544222 PP

>> DUF5595  Domain of unknown function (DUF5595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   3.2   1.8e-15   1.1e-11       3      62 ..     338     397 ..     320     405 .. 0.95
   2 ?    3.4   1.1     0.014        83      50      71 ..     444     465 ..     428     467 .. 0.84
   3 ?    0.8   0.9     0.086   5.1e+02      40      67 ..     469     496 ..     468     500 .. 0.85
   4 !    9.4   0.2   0.00018       1.1      38      71 ..     630     663 ..     612     665 .. 0.87
   5 ?   -3.5   1.5         2   1.2e+04      50      71 ..     686     709 ..     673     723 .. 0.50

  Alignments for each domain:
  == domain 1  score: 44.7 bits;  conditional E-value: 1.8e-15
     DUF5595   3 eedgievnkLFldYtvkcYekFmqgeDtFeeedaeleskLkelynvdeaqlesleeeekr 62 
                 e++++ v+kLF+dY+ + Y++F++ eD+++++  +l + ++++ +++e ++++l+ ++k 
  CCD25352.1 338 EKYELIVEKLFIDYITESYQSFLKLEDNYQPYMIKLTNGFNKFIHIIEIDIKNLQLNNKS 397
                 678999*************************************************99986 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.014
     DUF5595  50 eaqlesleeeekrLeeEierle 71 
                  ++le+++ e++r ++Ei+++e
  CCD25352.1 444 PKKLERMNDERERKQQEIKSIE 465
                 579****************998 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.086
     DUF5595  40 skLkelynvdeaqlesleeeekrLeeEi 67 
                 s L++++n  ++ +e+++ +++r ++ i
  CCD25352.1 469 SNLEKKLNDKNFSIENIDLKNERKNKLI 496
                 679999***************9988765 PP

  == domain 4  score: 9.4 bits;  conditional E-value: 0.00018
     DUF5595  38 leskLkelynvdeaqlesleeeekrLeeEierle 71 
                 + +++ +l+++++ q+es++ e+k  e+ i++l+
  CCD25352.1 630 IRNHILKLNEQIQIQIESIQNENKQIEDSIAQLK 663
                 6788899*********************999986 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 2
     DUF5595  50 eaqlesleeeekrLee..Eierle 71 
                 e++l++ + e+   ++  Eie+ e
  CCD25352.1 686 EFELNKQQNENDLITQriEIEKFE 709
                 344444444444332211344433 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.0   2.4e-05      0.14       4      32 ..     452     480 ..     450     483 .. 0.94
   2 ?   -1.3   0.2      0.45   2.7e+03      12      28 ..     697     713 ..     687     720 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.4e-05
  Val_tRNA-synt_C   4 keraRLeKeLaklekeiervqkKLanpgF 32 
                      +er+R + e++ +e ei  ++kKL+ ++F
       CCD25352.1 452 DERERKQQEIKSIELEISNLEKKLNDKNF 480
                      79**************************9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.45
  Val_tRNA-synt_C  12 eLaklekeiervqkKLa 28 
                      +L   + eie+ ++K++
       CCD25352.1 697 DLITQRIEIEKFERKIS 713
                      44444556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3187  (0.177757); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.48
# Mc/sec: 4943.70
//
Query:       CCD25353.1  [L=265]
Description: hypothetical protein NDAI_0F00340, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1298  (0.0723967); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 1968.14
//
Query:       CCD25354.1  [L=874]
Description: hypothetical protein NDAI_0F00350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.9e-125  416.5   0.3   2.9e-125  416.5   0.3    2.1  2  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
    5.5e-35  120.3   0.0    1.3e-34  119.1   0.0    1.6  1  Helicase_C_3   Helicase conserved C-terminal domain
    3.5e-16   59.7   2.7      5e-16   59.2   0.0    2.5  3  ResIII         Type III restriction enzyme, res subunit
    5.4e-12   46.0   1.7    1.5e-11   44.6   0.1    2.3  2  Helicase_C     Helicase conserved C-terminal domain
    1.7e-09   36.9   0.1    2.3e-09   36.4   0.1    1.3  1  SNF2_N         SNF2 family N-terminal domain
    3.3e-05   23.7   0.0    8.3e-05   22.4   0.0    1.7  1  DEAD           DEAD/DEAH box helicase
  ------ inclusion threshold ------
       0.04   13.3   0.0      0.093   12.1   0.0    1.5  1  SBP_bac_6      Bacterial extracellular solute-binding protein


Domain annotation for each model (and alignments):
>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.7       0.3   7.7e+02     140     161 ..     282     303 ..     265     322 .. 0.49
   2 !  416.5   0.3  1.1e-128  2.9e-125       1     233 [.     574     805 ..     574     820 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.3
  ERCC3_RAD25_C 140 qeaqrlGriLrakkksneeefn 161
                     e q+   iL+ak+++n++++n
     CCD25354.1 282 DEEQKKQSILKAKSNKNRNNTN 303
                    1334444444444443333333 PP

  == domain 2  score: 416.5 bits;  conditional E-value: 1.1e-128
  ERCC3_RAD25_C   1 LqekgylakvqcaevWcpmtaefykeylkakskkkkllyvmnpnkfracefLikyhekrgDkiivfsDnvfaLkeyakklkkpyiyGetseaerlk 96 
                    L++kg++a+vqcaevWcpmtaefy+eyl+++++k++lly+mnp+kf+ac+fLi+yhe+rgDkiivfsDnv+aL+eya kl kp+iyG+t+++er++
     CCD25354.1 574 LSQKGHIANVQCAEVWCPMTAEFYQEYLRESARKRMLLYIMNPTKFQACQFLIQYHERRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQERMN 669
                    789********************************************************************************************* PP

  ERCC3_RAD25_C  97 ilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrrqeaqrlGriLrakkksneeefnaffYsLvskDtkemaystkrqqflvdqGYaf 192
                    ilq+f+ n+++ntiflskvgDtsiDlPea++liqissh+gsrrqeaqrlGriLrak++ n+e+fnaffYsLvskDt+em+ystkrq+flvdqGYaf
     CCD25354.1 670 ILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR-NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAF 764
                    **********************************************************.9************************************ PP

  ERCC3_RAD25_C 193 kviteleeleeeeelaystkeeqkellqkvlaakdeeaeee 233
                    kvit+l+++e+ ++lay++++e++ellq+vl +++e+a  e
     CCD25354.1 765 KVITHLHGMENLPNLAYASPRERRELLQEVLLKNEEAAGLE 805
                    *********************************99987665 PP

>> Helicase_C_3  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0   4.9e-38   1.3e-34       5     123 ..     152     271 ..     147     274 .. 0.96

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 4.9e-38
  Helicase_C_3   5 aDltillegdsplaeearaaLaafAelesrpehahtyrltplSlrrAldaGltaeeiiefLerlskypvPqaleylirdvarryGklrlgl.easlv 100
                   +D++i+le +splae+a+++L ++Ae++srp+h+h+y++t++Sl++A+++Gl++++i+++L+rlsk+pv q++  +i+ ++ +yGk++l+  +++++
    CCD25354.1 152 SDGRIILESFSPLAEQAQDFLVTIAEPISRPSHMHEYKITAYSLYAAVSVGLETADILSVLDRLSKVPVAQSIIDFIEGATISYGKVKLVIkHNRYF 248
                   6*****************************************************************************************99***** PP

  Helicase_C_3 101 lrsddpalleelladkkiaklll 123
                   ++++++++l++ll+d+ i +l++
    CCD25354.1 249 VETTQADILQMLLKDSIIGPLRI 271
                   ****************9999886 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.6     4e+03      91     133 ..      32      67 ..       3      88 .. 0.61
   2 ?   -1.6   0.8      0.94   2.4e+03      93     120 ..     279     303 ..     235     341 .. 0.52
   3 !   59.2   0.0   1.9e-19     5e-16       3     169 ..     392     548 ..     390     550 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.6
                 SS-B--.......-SEEEEEHHHHHHTH........HHHTTT- CS
      ResIII  91 gdkkkakekdstnkkilvttiqsldadseeeeeeseellrdrf 133
                         +++++ +  v++++ l++d   +++++ee+++d+f
  CCD25354.1  32 T------DEENDDLNDNVVQVDNLHNDD-GDNNDDEEYGEDSF 67 
                 2......223334444455555555555.44666666666655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.94
                 -B--.......-SEEEEEHHHHHHTH.. CS
      ResIII  93 kkkakekdstnkkilvttiqsldadsee 120
                 k++    ++++k+ ++   +  ++++++
  CCD25354.1 279 KQDD---EEQKKQSILKAKSNKNRNNTN 303
                 3332...222222222222222222211 PP

  == domain 3  score: 59.2 bits;  conditional E-value: 1.9e-19
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekds 101
                 ++r+yQe+ + ++  +    r + g+i++++G+GKTlv + ++  ++k      +++l+ +   + q++++f ++   + + ++ ++++d+k+    ++
  CCD25354.1 392 QIRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKTLVGITAACTIKK-----SVIVLCTSSVSVMQWRQQFLQWCTLQPE-NCAVFTSDNKEM---FQ 478
                 7899***999999644...6899*****************99999999.....5******************999887754.888899888888...8* PP

                 ..-SEEEEEHHHHHHTH..........HHHTTT-S......EEEEETGGGTTS.TTTHHHHHT---SEEEEEESS- CS
      ResIII 102 tnkkilvttiqsldadseee..eeeseellrdrfd......viiiDEaHrlgakkswreilekfkeavllglTATp 169
                 t++ ++v+t++++ + +++   +++  ++     +      +ii DE+H + a + +r+++ ++ +  +lglTAT+
  CCD25354.1 479 TESGLVVSTYSMVANTRNRShdSQKVMDF-----LtgrewgFIILDEVHVVPA-AMFRRVVSAIAAHAKLGLTATL 548
                 ***************99444543333333.....2344447************.*********************7 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.53   1.4e+03      23      58 ..     249     283 ..     232     298 .. 0.74
   2 !   44.6   0.1   5.7e-15   1.5e-11       5     110 ..     621     724 ..     617     725 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.53
                 ESSHH.HHHHHHHHHHHTTSTEEEESTTSTHHHHHHH CS
  Helicase_C  23 vntid.rlekvklllekkgikvavlhgelpqnereei 58 
                 v+t++ ++  +++ll+ + i  +++++el+q+++++ 
  CCD25354.1 249 VETTQaDI--LQMLLKDSIIGPLRIDSELQQKKQDDE 283
                 33333222..5888888889999*********99865 PP

  == domain 2  score: 44.6 bits;  conditional E-value: 5.7e-15
                 HHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSS.SSHHHH CS
  Helicase_C   5 allell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesdvLiatdvaerGidipkvnlVinfdlp.rnvtsy 100
                 a+  l+  +e++g+ki++f+ ++  l+  ++ l k g  +  ++g++pq+er  il++f+ +++++ +  ++v+ ++id+p+++++i+++    + ++ 
  CCD25354.1 621 ACQFLIqYHERRGDKIIVFSDNVYALQ--EYAL-KLGKPF--IYGSTPQQERMNILQNFQyNDQINTIFLSKVGDTSIDLPEATCLIQISSHyGSRRQE 714
                 44445566899***************7..7773.334555..9*****************778888**************************5559*** PP

                 HHHHTTSSST CS
  Helicase_C 101 iqriGRtgRa 110
                  qr GR+ Ra
  CCD25354.1 715 AQRLGRILRA 724
                 *********8 PP

>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1     9e-13   2.3e-09      98     218 ..     304     551 ..     185     605 .. 0.77

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 9e-13
                 -.................................................................................................. CS
                 x.................................................................................................. RF
      SNF2_N  98 p.................................................................................................. 98 
                                                                                                                    
  CCD25354.1 304 Tnnkntknkdninpddveamfsavvggdneqddedddidavhsfeianesveivkkrcqeidypvleeydfrndhrnpdldidlkpstqirpyqeksls 402
                 034444444555556666666667777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                 ...................................EEEE--HHH.HHHHHHHHHHH-TTS-EEE--SSHHHH-----------------EEEE-HHHHH CS
                 ...................................xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  99 ...................................tLivvPasl.ldqWeneierhvsssalrvlvyggqkkmkkkntkvapklladydvvittYdvls 161
                                                    +++++ +s+ + qW +++ +++  +  ++ v ++++         ++ ++++ + v+ tY++++
  CCD25354.1 403 kmfgngrarsgiivlpcgagktlvgitaactikksVIVLCTSSVsVMQWRQQFLQWCTLQPENCAVFTSDN---------KEMFQTESGLVVSTYSMVA 492
                 77777777777777777777777777777777777999999976478**********99999999888875.........345889************* PP

                 HHT..........TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS CS
                 xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 162 reaelq....kkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqn 218
                 +  +++    k+++ l+ +ew +++lDE h +   ++  + +vs ++++ ++ lt+T + +
  CCD25354.1 493 NTRNRShdsqKVMDFLTGREWGFIILDEVHVVP--AAMFRRVVSAIAAHAKLGLTATLVRE 551
                 99888889999********************96..688999999999********996655 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   3.3e-08   8.3e-05       2     170 ..     395     549 ..     394     555 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 3.3e-08
                 HHHHHHHHHHHTT...CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSH..HHHHHHHH CS
                 xxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
        DEAD   2 diQaeaiplilgg...gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaa..rdqlskld 95 
                 ++Q++++  + g+   ++ ++  + G+GKTl+ + +++        + ++ +++++ +   + q  +++ +++  ++ + +++++++++   +  s l 
  CCD25354.1 395 PYQEKSLSKMFGNgraRSGIIVLPCGAGKTLVGITAAC--------TIKKSVIVLCTSSVSVMQWRQQFLQWCT-LQPENCAVFTSDNKemFQTESGLV 484
                 78999999999553446889************888888........4567899*******************99.555666665533331122222232 PP

                 .TTCSEEEEEHHHHHHHH.HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 .xxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  96 .ngvdivvgtpgrlddll.stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                  +++ +v  t  r +d       l+ ++  f++lDE++ +    f++ +++i+++              + l+ATl 
  CCD25354.1 485 vSTYSMVANTRNRSHDSQkVMDFLTGREWGFIILDEVHVVPAAMFRRVVSAIAAHA------------KLGLTATLV 549
                 26688888888888884422333568899**********************99999............688888876 PP

>> SBP_bac_6  Bacterial extracellular solute-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   3.6e-05     0.093     165     218 ..     473     526 ..     465     544 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.6e-05
   SBP_bac_6 165 nlkvvwPedGalvspifmlvkkgkkkelakafidfllspevqailakaggvfPv 218
                 n ++   e+G +vs+++m+ ++  ++ + ++++dfl+++e++ i+ ++  v+P+
  CCD25354.1 473 NKEMFQTESGLVVSTYSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPA 526
                 667788899************99999**************99888888778887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1541  (0.0859501); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 6007.26
//
Query:       CCD25355.1  [L=390]
Description: hypothetical protein NDAI_0F00360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.7e-12   47.3   0.0    6.6e-12   46.5   0.0    1.4  1  Abhydrolase_6  Alpha/beta hydrolase family
    1.5e-05   24.8   0.0    2.7e-05   23.9   0.0    1.4  1  Esterase       Putative esterase
    7.6e-05   22.5   0.1     0.0011   18.7   0.1    2.3  1  Abhydrolase_1  alpha/beta hydrolase fold
    9.5e-05   21.8   0.0    0.00027   20.3   0.0    1.9  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
       0.05   13.3   0.1       0.11   12.2   0.1    1.7  1  PGAP1          PGAP1-like protein
       0.14   11.6   0.0       0.25   10.8   0.0    1.4  1  Peptidase_S9   Prolyl oligopeptidase family


Domain annotation for each model (and alignments):
>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   2.2e-15   6.6e-12       2     217 ..      60     337 ..      59     340 .. 0.59

  Alignments for each domain:
  == domain 1  score: 46.5 bits;  conditional E-value: 2.2e-15
                    EEE--GC.....G.C.HHHHHHHHCCT........CEEEEE--TTSTS-.......GGCS--HHH.CHHH.HHHHCCTT...........TTSEEE CS
  Abhydrolase_6   2 lllHGagssassW.l.vapLaallaag........vhvlapDlpGhGrs.......dpppldled.ladl.aalldelaa.........gggpvvl 69 
                    ++lHG+g+++s+W +  + +  +l           +  + +D   hG+s        +  ++++d + d  + + +e+            +   v+
     CCD25355.1  60 IFLHGSGMNRSIWeYhISKMIDYLKTPtinwsinkI--ILMDQVTHGDSgllnkekLGVEFNWNDgAKDAcLVAQTEFYPltnnnndqeMRYFNVV 153
                    8************84588998888999888887665..89*******5566666557777*****77777644444444367877777655555** PP

                    EEETCHHHHHHH...HHHCC..EEEEES-..----TTT..S----TTHHHHHH.TT-C.........CCCHCCH..S-HSCCCCHHHCCCCHCHCC CS
  Abhydrolase_6  70 vGHSlGGalala...aaplalvvgvlldppptalpagl..laaalelllalla.llrl.........lawlsre..plprlfladedadaawrarl 148
                    vGHS+GG+ ala   + p++++  + ++p +     ++   +  ++++      +l++         l++   +  +  ++f+            l
     CCD25355.1 154 VGHSMGGFQALAcgaLYPYLFNLIITVEPVV---VQRNpfNSNDMTIMPESFYnSLISkmddcfdteLGY---NefMQKKSFYT-----KVHPIIL 238
                    ********9999766666777777*****44...222222222222222111112222222233212222...12223336666.....3333333 PP

                    CGHH.......................HHCCHHCHTT.....CCHHTT-TTGC..EEECTT-CHHHHCHHCCCH..STTEEETCE...SSS-HHHH CS
  Abhydrolase_6 149 arla.......................allaglgllp.....aaawadlpvpl..lvlggeDplvprllerlla..qagarlpvvlpgaGHlphle 212
                     rl                          l++l l+p      +++  + +p+  l+ g++ ++ p+  e+ll+  +  ++l + +p+++Hl+++e
     CCD25355.1 239 KRLIefekiwslrdgseklstkmnkfqNILCYLTLNPganwlIHNLQFIESPVinLT-GENSKWTPPENEKLLRtkIKNYTL-DPIPNGDHLVNIE 332
                    333322222222222233333333333222233333311111334444444446455.89999***9999999999999999.99*********** PP

                    SHHHH CS
  Abhydrolase_6 213 epdev 217
                    +pde+
     CCD25355.1 333 NPDET 337
                    **997 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   9.2e-09   2.7e-05     100     153 ..     133     187 ..     115     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 9.2e-09
                 THHHHHHHHHCSEECCC.EEEEEETHHHHHHHHHHHCSTTTCCEEEEES--S-CC CS
    Esterase 100 qeLlplldanfrtapdg.ravaGqSmGGlgALilalkhpdrFgsvssfSpivnps 153
                  e  pl + n + + ++ ++v+G+SmGG+ AL +++ +p +F  ++   p+v  +
  CCD25355.1 133 TEFYPLTNNNNDQEMRYfNVVVGHSMGGFQALACGALYPYLFNLIITVEPVVVQR 187
                 567777777777777889************************9998887776555 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   3.7e-07    0.0011      76     256 ..     151     333 ..     149     334 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.7e-07
                    E.EEEETHHHHHHHHHHHHHGGGEEEEEEESE..........CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHH CS
  Abhydrolase_1  76 t.lvGhSmGGmialayaaeyperVkalvllga..........idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvda 160
                    + +vGhSmGG++ala  a+yp   + ++++++          +d  +++++     + ++ d fd+    ++  +   ++++ +  ++ r+     
     CCD25355.1 151 NvVVGHSMGGFQALACGALYPYLFNLIITVEPvvvqrnpfnsNDMTIMPESFYNSLISKMDDCFDTELGYNEFMQKKSFYTKVHPIILKRLI---- 242
                    559*****************************998877777777777777777777777777777776666666666666666666666632.... PP

                    HHHHCHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTSEEEEEEETCSSSHHHHS CS
  Abhydrolase_1 161 lkfpdkskrfpssgsdnasslatgalksieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpkkrlvvisdagHlafleg 256
                     +f++ ++ ++ s+    ++++++ +++  + +  + a++l      + + +p++++ g++ + +pp++   l+ ++++ +l  i+++ Hl+++e+
     CCD25355.1 243 -EFEKIWSLRDGSEKLSTKMNKFQNILCYLTLN--PGANWLIHNL--QFIESPVINLTGENSKWTPPENEKLLRTKIKNYTLDPIPNGDHLVNIEN 333
                    .22555555555555555555555555554443..2222222211..1234477777777777777777777777777766666677777777666 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     9e-08   0.00027      35     117 ..      96     190 ..      56     333 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 9e-08
  Hydrolase_4  35 yalDhrGhGrse....gkrghvpsfddyvdDlaafv....ekvkeehpel....plfllGhSmGGliallyllrypdkvaglilsaPalkikakl 117
                  + +D+  hG s+     k g   +++d  +D+  +       + ++++++      +++GhSmGG+ al+ ++ yp  ++ +i + P++  ++++
   CCD25355.1  96 ILMDQVTHGDSGllnkEKLGVEFNWNDGAKDACLVAqtefYPLTNNNNDQemryFNVVVGHSMGGFQALACGALYPYLFNLIITVEPVVVQRNPF 190
                  6678888888888887667777788888888765543322223333333334334579*******************999999999998777554 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.7e-05      0.11      94     130 ..     152     191 ..      53     225 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.7e-05
       PGAP1  94 iliGHSmGGivaraaltlknyikq...svntiltlasPha 130
                 +++GHSmGG+ a a   l  y  +   +v+ ++++  P +
  CCD25355.1 152 VVVGHSMGGFQALACGALYPYLFNliiTVEPVVVQRNPFN 191
                 79********997766555543321113444455555554 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   8.3e-05      0.25      67     110 ..     152     195 ..     147     233 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 8.3e-05
                   EEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTS CS
  Peptidase_S9  67 aitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdl 110
                   ++ G+S GG+ ++a+ +  p lF  ++ + pvv  ++   ++d+
    CCD25355.1 152 VVVGHSMGGFQALACGALYPYLFNLIITVEPVVVQRNPFNSNDM 195
                   689*****************************988876666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2785.89
//
Query:       CCD25356.1  [L=469]
Description: hypothetical protein NDAI_0F00370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-09   35.5   0.3    9.4e-09   34.7   0.3    1.5  1  Whi5       Whi5 like
  ------ inclusion threshold ------
        1.5    8.4  40.5        1.2    8.7  13.5    2.5  2  SR-25      Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> Whi5  Whi5 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.3   1.1e-12   9.4e-09       1      25 []     221     245 ..     221     245 .. 0.98

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 1.1e-12
        Whi5   1 kLktRLqlAmyKvqtGwedlsLdel 25 
                 +LktRL++A+ K+++Gw+ ++L+el
  CCD25356.1 221 NLKTRLNYAFIKLKNGWTEKTLSEL 245
                 7**********************98 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  17.5   0.00068       6.1      51     110 ..      20      80 ..       1     114 [. 0.36
   2 ?    8.7  13.5   0.00013       1.2      29      86 ..     363     420 ..     340     433 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00068
       SR-25  51 rskekkkkkrrrs.sssssssssssssssssssssssddrkkrgkkkdkkkkkkkkkkkkk 110
                 +++   +kk +++ s sssssss+s s s ss sss+  r+k + k   +++++++++++k
  CCD25356.1  20 HDNTTPRKKVTSQiSPSSSSSSSPSPSHSPSSPSSSETYRRKPELKYYYHNHNRNHRRNSK 80 
                 2223333333333033333344444444444434444334433322222222222222222 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00013
       SR-25  29 rsssasksqsrkassasekeeerskekkkkkrrrssssssssssssssssssssssss 86 
                  ++  s s+ +k ++++++ e++s+   +k++++ s ss++ss+s +sssss+ss+ s
  CCD25356.1 363 IETLMSLSSPKKPKQQQNQIENDSNGFIRKHKKNISNSSTESSTSGKSSSSSASSAFS 420
                 4444555555666566666666777766666666666666666666666555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1719  (0.0958782); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 3203.73
//
Query:       CCD25357.1  [L=493]
Description: hypothetical protein NDAI_0F00380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-06   26.0  21.4    8.2e-06   26.0  10.2    3.7  3  LIM       LIM domain


Domain annotation for each model (and alignments):
>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.78   1.4e+04      43      51 ..     324     332 ..     318     334 .. 0.68
   2 !   26.0  10.2   4.6e-10   8.2e-06       1      55 [.     386     451 ..     386     454 .. 0.78
   3 !    4.3   1.4    0.0026        47      29      55 ..     458     487 ..     456     490 .. 0.56

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.78
                 EETTEEEEH CS
         LIM  43 ekdgklyCk 51 
                 +++++++C+
  CCD25357.1 324 SHNEEIVCR 332
                 467778886 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 4.6e-10
                 -TTT--BE-........TTTEEEEE..TTEEEETTTSB-TTT-SB-CTT..CEEETTEEEEHHHHH CS
         LIM   1 CagCnkkia........drelvlka..ldkvwHeeCFtCsdCqkeLkegs.fyekdgklyCkkdyl 55 
                 C +C+k+i+        +++ + ++  l  +wH+eCF+C  C+ +++++  +y++d+ +yC+ d++
  CCD25357.1 386 CRKCGKEITnsskrifsKKKNIGNFgeLSGQWHRECFRCHICHIKFDKNIeVYIHDDVPYCEFDFH 451
                 8888888887776666533333333113468*******************************9996 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0026
                 -TTT-SB-CTT.CEEETT.E...EEEHHHHH CS
         LIM  29 CsdCqkeLkegsfyekdg.k...lyCkkdyl 55 
                 C  C+k  + + +++ ++ +   +yC + y+
  CCD25357.1 458 CLICNKFVEGK-CFINEKlEkfhVYCLERYQ 487
                 66666666555.5555553234566766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1615  (0.0900775); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3338.85
//
Query:       CCD25358.1  [L=908]
Description: hypothetical protein NDAI_0F00390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-32  109.5   3.8    9.9e-32  109.5   3.8    2.0  2  DUF3336   Domain of unknown function (DUF3336)
    2.4e-25   89.9   0.0    4.4e-25   89.1   0.0    1.4  1  Patatin   Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> DUF3336  Domain of unknown function (DUF3336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1      0.95   8.5e+03     100     113 ..       7      20 ..       3      21 .. 0.78
   2 !  109.5   3.8   1.1e-35   9.9e-32       8     137 ..     116     246 ..     109     247 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.95
     DUF3336 100 TKklieeYidevek 113
                 T  lie+Y++  ++
  CCD25358.1   7 TQYLIEKYYESTNE 20 
                 899*****998765 PP

  == domain 2  score: 109.5 bits;  conditional E-value: 1.1e-35
     DUF3336   8 rkklrkklrkattYeeWkeaAkeLDellgndeWkendes.yYdyklvkkvlkkLrklrekedlkellellrtclkrNfagienprLYsetyiGTKklie 105
                  k+l  +  ++ +Y +W++++ eLD+l+++++Wk ++es +Ydy l+ + + +Lr+lr ++d+++ll+l+rt+++rN++gi n +LY+++++GTK++i+
  CCD25358.1 116 IKNLLIQKANSISYYQWHDICTELDNLTNKKNWKLTKESsLYDYDLIVSLTCELRNLRLSNDYTHLLYLIRTTWVRNLGGIGNVNLYRHSHVGTKHIID 214
                 567777889999*************************************************************************************** PP

     DUF3336 106 eYidevekalellaetkqlsaeekleffketr 137
                 eY++e + a+e l+++++l+ ++ l +f+++r
  CCD25358.1 215 EYLKESNLAIEALLTQSDLDDSYLLGIFQQCR 246
                 *****************************998 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   4.9e-29   4.4e-25       1     200 [.     254     451 ..     254     454 .. 0.85

  Alignments for each domain:
  == domain 1  score: 89.1 bits;  conditional E-value: 4.9e-29
     Patatin   1 LvlsGGGsrgafslgalkaLkkelgerfdiisGtSaGAiialllalgrdpa..alvddlrnlllnkifdrdllirelaanlaarlsgllgkgglfdaea 97 
                 LvlsGG + g+f++g+l+ L  e+   ++iisGtS GAi+a++++  ++++   l +++ n++ n ++d++  + +   nl    s+++ +g+ fd ++
  CCD25358.1 254 LVLSGGATFGLFHIGVLASL-FEADVMPRIISGTSSGAIVASIFCVHTTDEipSLLANVLNMEFNIFKDDK--DKSDTDNLLIKFSRFMKTGTWFDNKH 349
                 8*******************.********************888887544311455666666666666666..8889999999**************** PP

     Patatin  98 lrellrkvladktlkrlsarlgklpllkslftanqavpaittataatastanranglytedddddvdladavraSsafPglfppvsldge......... 187
                 l++++ ++l+d+t++++  r gk+                  + +++ ++ +    l++  ++++v +++av+aS+++Pg+fp+  l+ +         
  CCD25358.1 350 LVNTMITFLGDLTFREAYNRTGKI-----------------LNITVSPASIFEQGRLLNNLTAPNVLIWSAVCASCSVPGIFPATPLYEKdpltgkvtq 431
                 ************************.................67788888888888889999999******************77777544555555555 PP

     Patatin 188 .......lyvDGGilsNvPi 200
                        ++vDG++ + +Pi
  CCD25358.1 432 wggnrsvKFVDGSVDNDLPI 451
                 55558999*****9999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       617  (0.0344135); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 6657.24
//
Query:       CCD25359.1  [L=764]
Description: hypothetical protein NDAI_0F00400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      9e-10   38.0   4.7     0.0012   18.5   0.0    3.4  3  TPR_1       Tetratricopeptide repeat
    1.4e-09   37.3   3.2    0.00056   19.8   0.0    3.5  3  TPR_2       Tetratricopeptide repeat
    1.4e-05   25.3   0.2     0.0073   16.6   0.0    3.2  3  TPR_12      Tetratricopeptide repeat
    2.8e-05   23.9   0.0    8.9e-05   22.3   0.0    1.9  1  F-box       F-box domain
    0.00031   20.7   4.9    0.00096   19.2   0.1    2.9  2  TPR_8       Tetratricopeptide repeat
     0.0013   18.5   0.0     0.0029   17.5   0.0    1.6  1  F-box-like  F-box-like
     0.0021   18.0   0.2        1.5    9.0   0.0    4.0  3  LRR_6       Leucine Rich repeat
     0.0036   17.2   0.8        0.9    9.7   0.0    3.1  3  TPR_7       Tetratricopeptide repeat
     0.0048   17.3  27.6      0.028   14.8   1.2    7.3  8  LRR_4       Leucine Rich repeats (2 copies)
     0.0083   16.3   3.9          1    9.6   0.8    2.7  2  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
  ------ inclusion threshold ------
       0.15   11.8   0.8        2.8    7.7   0.1    2.7  2  TPR_11      TPR repeat
       0.22   12.3   0.4        4.7    8.1   0.0    2.8  2  TPR_6       Tetratricopeptide repeat
        3.6    8.5  14.3         18    6.4   0.6    6.2  5  LRR_1       Leucine Rich Repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.9e-07    0.0012       6      28 ..      13      35 ..      12      38 .. 0.93
   2 !    9.9   0.0   0.00047      0.65       6      26 ..      99     119 ..      99     127 .. 0.86
   3 !    9.6   0.5    0.0006      0.82       3      29 ..     130     156 ..     128     158 .. 0.92

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 8.9e-07
                HHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1  6 nlGnayfklgkydeAleyyekAL 28
                +lG +yf++++y++A + +ekA+
  CCD25359.1 13 QLGTTYFQNENYEKAKQVFEKAI 35
                69********************9 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00047
                 HHHHHHHHTT-HHHHHHHHHH CS
       TPR_1   6 nlGnayfklgkydeAleyyek 26 
                 n++++  k+g++++Al +  k
  CCD25359.1  99 NRAACWEKMGELEKALRDATK 119
                 9***************98766 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0006
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALe 29 
                 ++ ++G +++kl k+++A   y+ AL+
  CCD25359.1 130 CFIRKGKILQKLHKLKDAYNTYKTALR 156
                 6789*********************96 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.1e-07   0.00056       6      31 ..      13      38 ..      11      41 .. 0.91
   2 !    9.6   0.0   0.00075         1       3      32 ..      96     125 ..      94     127 .. 0.84
   3 !    6.7   0.2    0.0064       8.8       4      29 ..     131     156 ..     129     159 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 4.1e-07
       TPR_2  6 nlGlayyklgdyeeAleafekAleld 31
                +lG  y+++ +ye+A++ fekA+ l 
  CCD25359.1 13 QLGTTYFQNENYEKAKQVFEKAIILT 38
                69********************9886 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00075
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldP 32 
                 +l n++ +++k+g++e+Al++  k   ++P
  CCD25359.1  96 LLDNRAACWEKMGELEKALRDATKMCFIEP 125
                 789*****************9988665555 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0064
       TPR_2   4 lynlGlayyklgdyeeAleafekAle 29 
                   + G+++ kl ++++A + ++ Al+
  CCD25359.1 131 FIRKGKILQKLHKLKDAYNTYKTALR 156
                 6789********************98 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.3e-06    0.0073       7      51 ..      12      55 ..       6      55 .. 0.86
   2 ?    2.3   0.0      0.15     2e+02      40      66 ..      89     115 ..      87     119 .. 0.81
   3 ?    2.3   0.0      0.15   2.1e+02       9      34 ..     134     159 ..     129     170 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.3e-06
      TPR_12  7 nnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnL 51
                 +l++++++ ++y++A + +eka+ +  +++  d +lt++++++L
  CCD25359.1 12 IQLGTTYFQNENYEKAKQVFEKAIILT-KSYSYDDLLTLRSQYGL 55
                48*********************9999.66789999999998876 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.15
      TPR_12  40 dhpltattlrnLgrlyralgryeeAle 66 
                 +hp ++  l n + + +++g++e+Al+
  CCD25359.1  89 YHPKYIKLLDNRAACWEKMGELEKALR 115
                 588888999999999889999999986 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.15
      TPR_12   9 laavlrrlgrydeAlellekaleiar 34 
                  + +l++l ++ +A   +++al+ a+
  CCD25359.1 134 KGKILQKLHKLKDAYNTYKTALRNAN 159
                 57889999999999999999998875 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   6.5e-08   8.9e-05       3      35 ..     255     287 ..     253     292 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 6.5e-08
                 HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHH CS
       F-box   3 lsrLPsevlrhILerLplsdllalrrVSkgwri 35 
                 +  LP++++  ++++ +++ l+ l+ VSk+w++
  CCD25359.1 255 IAKLPLDIMPLVFQQFSTKQLIQLSYVSKTWHS 287
                 678****************************98 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1     7e-07   0.00096       6      28 ..      13      35 ..      12      40 .. 0.94
   2 ?    2.7   0.3      0.14   1.9e+02       4      29 ..     131     156 ..     128     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 7e-07
                HHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8  6 nlgsiylklgdyeeAkeyyekal 28
                +lg +y++ ++ye+Ak+++eka+
  CCD25359.1 13 QLGTTYFQNENYEKAKQVFEKAI 35
                79********************8 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.14
                 HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekale 29 
                   ++g+i++kl +++ A  +y+ al+
  CCD25359.1 131 FIRKGKILQKLHKLKDAYNTYKTALR 156
                 6789*******************996 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.1e-06    0.0029       1      44 [.     255     298 ..     255     302 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2.1e-06
  F-box-like   1 isrLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrr 44 
                 i+ LP +i+  +F++ ++++L++l+ V++ W++ ++  p L + 
  CCD25359.1 255 IAKLPLDIMPLVFQQFSTKQLIQLSYVSKTWHSKIFAFPHLFKD 298
                 578******************************99988888775 PP

>> LRR_6  Leucine Rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1       0.1   1.4e+02       5      21 ..     591     607 ..     589     609 .. 0.89
   2 ?    0.1   0.0       0.8   1.1e+03       5      14 ..     618     627 ..     617     630 .. 0.86
   3 !    9.0   0.0    0.0011       1.5       3      18 ..     682     698 ..     682     703 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.1
       LRR_6   5 LteLdLsgNdIgDeGae 21 
                 L+eLdL+g  I++ G++
  CCD25359.1 591 LKELDLMGSSINGIGLT 607
                 9**********999986 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.8
       LRR_6   5 LteLdLsgNd 14 
                 Lt+L++ ++ 
  CCD25359.1 618 LTKLNIGDCP 627
                 89*****997 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.0011
       LRR_6   3 thLteLdLsgNd.IgDe 18 
                 +hL++LdLs N  I+++
  CCD25359.1 682 SHLEKLDLSMNAaITGV 698
                 6**********999986 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00065       0.9       4      29 ..      13      38 ..      12      47 .. 0.87
   2 ?    4.1   0.0     0.042        58       2      20 ..      97     115 ..      96     119 .. 0.91
   3 ?   -0.7   0.0       1.4     2e+03       6      30 ..     135     157 ..     130     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00065
       TPR_7  4 nLarlysrlGdyeeAielyeqsLalt 29
                +L+ +y++  +ye+A +++e+++ lt
  CCD25359.1 13 QLGTTYFQNENYEKAKQVFEKAIILT 38
                69*******************76555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.042
       TPR_7   2 LlnLarlysrlGdyeeAie 20 
                 L+n a +++++G+ e+A++
  CCD25359.1  97 LDNRAACWEKMGELEKALR 115
                 8999*************85 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 1.4
       TPR_7   6 arlysrlGdyeeAielyeqsLaltk 30 
                 + + ++l + ++A   y+   al++
  CCD25359.1 135 GKILQKLHKLKDAYNTYKT--ALRN 157
                 78889999999********..7765 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.1       3.7   5.1e+03      12      38 ..     355     376 ..     345     380 .. 0.48
   2 ?    2.6   0.1      0.15   2.1e+02      18      32 ..     425     439 ..     419     450 .. 0.76
   3 ?    2.3   0.3      0.18   2.5e+02      16      39 ..     452     478 ..     430     484 .. 0.59
   4 !   14.8   1.2     2e-05     0.028      17      40 ..     522     544 ..     515     549 .. 0.80
   5 ?   -2.2   0.0       4.6   6.3e+03      14      28 ..     551     562 ..     548     565 .. 0.62
   6 ?    4.4   0.1     0.039        54      21      34 ..     587     602 ..     577     612 .. 0.71
   7 ?    5.0   0.1     0.025        34       2      39 ..     590     631 ..     589     636 .. 0.75
   8 !    7.0   0.1    0.0059       8.1       2      25 ..     683     707 ..     653     709 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 3.7
                 ---E-S-HHH-TT--EEE-.-S----- CS
       LRR_4  12 qltdiplleklpnLkeLdLsgNnlitd 38 
                 ++ +  l   ++nL +  L +Nn+ ++
  CCD25359.1 355 NIEETKL---CKNLFTT-L-QNNQCDN 376
                 4544444...5555555.5.4444433 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.15
                 -HHH-TT--EEE-.- CS
       LRR_4  18 lleklpnLkeLdLsg 32 
                  +++l nL++L +++
  CCD25359.1 425 KFQNLRNLEVLFVNS 439
                 366799****99955 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.18
                 -S-HH..H-TT--EEE-..-S-----G CS
       LRR_4  16 iplle..klpnLkeLdL.sgNnlitdl 39 
                 i++l+  +l++L+++ +  + ++i+++
  CCD25359.1 452 IEFLSenQLKHLESIKIlCDSTKIRSF 478
                 444335359999999864455677776 PP

  == domain 4  score: 14.8 bits;  conditional E-value: 2e-05
                 S-HHH-TT--EEE-.-S-----GG CS
       LRR_4  17 plleklpnLkeLdLsgNnlitdld 40 
                 ++l+++pnLk+L+L +Nn+ ++l+
  CCD25359.1 522 SWLKNFPNLKTLWL-ENNQNGQLS 544
                 45889*********.888999887 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 4.6
                 -E-S-HHH-TT--EE CS
       LRR_4  14 tdiplleklpnLkeL 28 
                 +d p+   + nL+ L
  CCD25359.1 551 RDNPN---FHNLERL 562
                 55444...7777776 PP

  == domain 6  score: 4.4 bits;  conditional E-value: 0.039
                 H-TT--EEE-...-S- CS
       LRR_4  21 klpnLkeLdL..sgNn 34 
                 +l+ LkeLdL  s+ n
  CCD25359.1 587 NLKALKELDLmgSSIN 602
                 6********9544433 PP

  == domain 7  score: 5.0 bits;  conditional E-value: 0.025
                 S--EEE--SS---E-S-...HHH.-TT.--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqltdipl...lek.lpn.LkeLdLsgNnlitdl 39 
                  L++LdL +  +  i+l   ++  lp  L++L++ ++++i +l
  CCD25359.1 590 ALKELDLMGSSINGIGLtrlISYcLPEeLTKLNIGDCPFI-KL 631
                 6999999987888888876433449999******888666.65 PP

  == domain 8  score: 7.0 bits;  conditional E-value: 0.0059
                 S--EEE--.SS---E-S-HHH-TT- CS
       LRR_4   2 nLevLdLs.nNqltdiplleklpnL 25 
                 +Le+LdLs n  +t ++  e l+ L
  CCD25359.1 683 HLEKLDLSmNAAITGVSIYEFLKEL 707
                 5777777744467776665545555 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1     0.007       9.6      26      49 ..      11      34 ..       7      54 .. 0.84
   2 !    9.6   0.8   0.00074         1      30      80 ..     101     152 ..      87     154 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.007
                HHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3 26 ayllAlclylngqykrAyellrka 49
                a  l+ ++++n++y++A ++++ka
  CCD25359.1 11 AIQLGTTYFQNENYEKAKQVFEKA 34
                567899***************998 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00074
                 HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  30 AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 A c  ++g+ ++A++ + k+  +++ +l+c + +++ l kL+k+++A+++++
  CCD25359.1 101 AACWEKMGELEKALRDATKMcFIEPYNLKCFIRKGKILQKLHKLKDAYNTYK 152
                 7788899*****************************************9876 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1     0.002       2.8       1      26 [.      15      40 ..      15      42 .. 0.88
   2 ?    1.4   0.1      0.18   2.5e+02       1      22 [.     135     156 ..     135     156 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.002
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPd 26
                G  y++  +ye+A ++++kA+ l+ +
  CCD25359.1 15 GTTYFQNENYEKAKQVFEKAIILTKS 40
                567******************88766 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.18
      TPR_11   1 GdayyeqGkyeeAieaYkkAlk 22 
                 G+++ ++ k+++A + Yk+Al+
  CCD25359.1 135 GKILQKLHKLKDAYNTYKTALR 156
                 56666677999*********96 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0034       4.7       5      27 ..      13      35 ..      12      35 .. 0.89
   2 ?    1.0   0.1      0.62   8.6e+02       5      21 ..      99     115 ..      96     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0034
                HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6  5 klalsyrklgdtdkAlealerli 27
                +l+  y++  +++kA++ +e+ i
  CCD25359.1 13 QLGTTYFQNENYEKAKQVFEKAI 35
                6999***966**********986 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAle 21 
                 ++a + +k+g+ +kAl+
  CCD25359.1  99 NRAACWEKMGELEKALR 115
                 68999***9******87 PP

>> LRR_1  Leucine Rich Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       7.2     1e+04       3      20 ..     346     374 ..     345     377 .. 0.42
   2 ?    6.4   0.6     0.013        18       1      15 [.     529     543 ..     529     559 .. 0.83
   3 ?    0.8   0.0      0.89   1.2e+03       2      17 ..     591     611 ..     590     615 .. 0.62
   4 ?    5.0   0.1     0.036        50       2      14 ..     618     632 ..     617     644 .. 0.78
   5 ?   -0.3   0.0         2   2.8e+03       1      10 [.     683     692 ..     683     697 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 7.2
       LRR_1   3 rhLdLsnnpl...........lglppnsf 20 
                 r+L++s+ ++           + l++n +
  CCD25359.1 346 RTLHISSKSNieetklcknlfTTLQNNQC 374
                 56666444432222222222266666655 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.013
       LRR_1   1 nLrhLdLsnnpllgl 15 
                 nL++L L+nn++++l
  CCD25359.1 529 NLKTLWLENNQNGQL 543
                 8**********9655 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.89
       LRR_1   2 LrhLdLsnnpl.....lglpp 17 
                 L++LdL + ++     ++l++
  CCD25359.1 591 LKELDLMGSSIngiglTRLIS 611
                 9****9666653444465555 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.036
       LRR_1   2 LrhLdLsnnpl..lg 14 
                 L++L+++++p+  l+
  CCD25359.1 618 LTKLNIGDCPFikLQ 632
                 89********94433 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 2
       LRR_1   1 nLrhLdLsnn 10 
                 +L++LdLs n
  CCD25359.1 683 HLEKLDLSMN 692
                 69*****966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       967  (0.053935); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.64u 0.25s 00:00:00.89 Elapsed: 00:00:00.39
# Mc/sec: 5831.00
//
Query:       CCD25360.1  [L=413]
Description: hypothetical protein NDAI_0F00410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-47  160.0  10.1    6.8e-28   97.9   3.1    2.4  2  Zip        ZIP Zinc transporter
  ------ inclusion threshold ------
       0.16   12.1   4.6       0.25   11.4   0.3    2.5  2  Jagunal    Jagunal, ER re-organisation during oogenesis
       0.77    9.7  11.7        2.9    7.8   0.3    3.8  5  Reticulon  Reticulon


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.6   5.6e-22   3.4e-18       2     109 ..      96     198 ..      95     217 .. 0.89
   2 !   97.9   3.1   1.1e-31   6.8e-28     187     332 ..     228     406 ..     223     407 .. 0.89

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 5.6e-22
         Zip   2 llkilaiiaililsllgllgpllvpkiskl....lsklllslllafavGvllgtaflhLlPealealeesqleeehthplagllvllGflllllvekll 96 
                 ++ +++ +++++++l+gl+++++v+k++++     s+ ++ +l++f+vG+llgt+f+ ++Pe+++++ e++        ++gl +l+Gfl+++l+++l+
  CCD25360.1  96 GVFLMSTVLLIATFLIGLVPLYYVKKQNSNlaskKSNQMIGILSQFGVGMLLGTSFMLVIPEGIKSCLEHD-------GNVGLNLLIGFLVVYLLDRLV 187
                 577889999************************99********************************9998.......89******************* PP

         Zip  97 tmivekksshkek 109
                 ++i+++  ++k  
  CCD25360.1 188 QLIINR--KNKSV 198
                 *****9..33333 PP

  == domain 2  score: 97.9 bits;  conditional E-value: 1.1e-31
         Zip 187 iilllglilHsfidGLAlG.vssssstgislfiAvllHelpeelglgaiLlkaglsrkkav.llnllfaltaplGiliGilvrsisessgaeivsgill 283
                   ++++l++H ++dG+AlG + +++s +i+++iA+++H++p++l+l + +++ +    + v    ++fal++plG+++  +  + ++s +++++sg ll
  CCD25360.1 228 NNVVFALFIHGLSDGIALGtTNNNDSLLIIVLIAIVIHKIPAVLSLSSLMISKQKLPEWEVvSNLFAFALSTPLGYICLSM-FNLNHSETMDWISGNLL 325
                 5799***************8888888999************************99999999455578**********9999.8899************* PP

         Zip 284 alsaGtflYvalvellphEllnek................................gssslkqsllqllglllGfalmlll 332
                  +s+G +lY +++ ++  + ++++                                 +++ k+++ ++l+++ G++l+ll+
  CCD25360.1 326 LMSGGSLLYASFTAFVTGDKDSNNhshthqifrnsenetetdttidhemgnsfqenVDDDTKLPHDESLYVVSGVVLPLLI 406
                 ****************87777666677788999999999999999999999999987788999999999999999999988 PP

>> Jagunal  Jagunal, ER re-organisation during oogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.5     0.043   2.6e+02     114     158 ..     101     147 ..      83     155 .. 0.60
   2 ?   11.4   0.3   4.3e-05      0.25      45     132 ..     253     342 ..     244     360 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.043
     Jagunal 114 tlvlgllpllygav..eylkevleylkskeaseeitllqgfplvvlw 158
                 ++vl +++ l+g+v  +y+k+  + l sk++++ i +l +f +++l 
  CCD25360.1 101 STVLLIATFLIGLVplYYVKKQNSNLASKKSNQMIGILSQFGVGMLL 147
                 33344444444443225567777777777777778888888887765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4.3e-05
     Jagunal  45 illlllmlakllaeildrldifileveelqlpkpllWe..YvwllSivpsllgllalkknkikllklyligtlvlgllpllygaveylke 132
                  ll+++++a + ++i   l + +l +++ +lp+ ++    +++ lS  + ++ l+ ++ n+++++  +    l+++ ++lly+ ++ +  
  CCD25360.1 253 SLLIIVLIAIVIHKIPAVLSLSSLMISKQKLPEWEVVSnlFAFALSTPLGYICLSMFNLNHSETMDWISGNLLLMSGGSLLYASFTAFVT 342
                 5777888888888888888889999*******9655555589999**************************************9988765 PP

>> Reticulon  Reticulon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.3   0.00049       2.9      12      48 ..       4      38 ..       2      82 .. 0.77
   2 ?    6.1   0.6    0.0017       9.9     116     148 ..      92     123 ..      88     124 .. 0.87
   3 ?   -3.3   0.0       1.3   7.5e+03      43      61 ..     175     193 ..     169     228 .. 0.50
   4 ?   -2.0   0.2      0.52   3.1e+03     106     129 ..     254     277 ..     229     283 .. 0.66
   5 ?    0.9   0.0     0.065   3.9e+02      18      64 ..     302     346 ..     296     382 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00049
   Reticulon 12 ksgivlgglllllllfellgysllslvsklllllllv 48
                 s+++l+++++++++++++  s++ l ++l+ll+  +
  CCD25360.1  4 SSMGMLLCAIVCFYICRCF--SFIYLYLHLVLLVERF 38
                6999***************..*********9998544 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0017
   Reticulon 116 lsilgslfslltllyigvvlaftvPllYekyed 148
                 +silg  f + t+l+i+++l+  vPl Y k+++
  CCD25360.1  92 ISILGV-FLMSTVLLIATFLIGLVPLYYVKKQN 123
                 566666.9999*******************996 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 1.3
   Reticulon  43 lllllvlflwaeyagllnk 61 
                 + +l+v +l + +  ++n+
  CCD25360.1 175 IGFLVVYLLDRLVQLIINR 193
                 3333333333333334444 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.52
   Reticulon 106 flkvalllyilsilgslfslltll 129
                  l ++l++ +++++ +++sl +l+
  CCD25360.1 254 LLIIVLIAIVIHKIPAVLSLSSLM 277
                 344455555556666666655555 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.065
   Reticulon  18 gglllllllfellgysllslvsklllllllvlflwaeyagllnkskp 64 
                 g ++l+++ ++ +    + ++s  lll+ + ++l+a+++ +++  k 
  CCD25360.1 302 GYICLSMFNLNHS--ETMDWISGNLLLMSGGSLLYASFTAFVTGDKD 346
                 5556666666666..999999999**********9999988887533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1165  (0.0649785); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3228.98
//
Query:       CCD25361.1  [L=82]
Description: hypothetical protein NDAI_0F00420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-16   60.9   4.7    1.6e-16   60.8   4.7    1.0  1  U3_snoRNA_assoc  U3 snoRNA associated
  ------ inclusion threshold ------
      0.046   13.3   0.0      0.056   13.1   0.0    1.1  1  Oxidored_molyb   Oxidoreductase molybdopterin binding domain


Domain annotation for each model (and alignments):
>> U3_snoRNA_assoc  U3 snoRNA associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   4.7   1.8e-20   1.6e-16      28      90 .]       6      76 ..       1      76 [. 0.91

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 1.8e-20
  U3_snoRNA_assoc 28 n.......eepkkarkkkkkekllelkekrpkdvkkGpvsvrVlkssnss.klaPkaekkirnskekwLkR 90
                     n       e++ + + +++k+k+++lk+++++ v+kGpv+v++l+s+n+s +laPk+e ++++sk+kwLkR
       CCD25361.1  6 NfneidpsEYSLEIKSEINKRKKKTLKNLKKTIVRKGPVTVSLLSSTNESrSLAPKREVTVMKSKDKWLKR 76
                     445555669999************************************999*******************9 PP

>> Oxidored_molyb  Oxidoreductase molybdopterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   6.3e-06     0.056       5      58 ..       8      64 ..       4      78 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.3e-06
                    --.GCCC-EEEEESTCSSEEEEEHHHHHH..C-EEEEEEEEE-TTTTHHHHC.HH-- CS
  Oxidored_molyb  5 pkvdpekwrlevdglvekplslslddLka..lpavevtatlqCagnrrkeln.kkkv 58
                    +++dp++++le++ +++k ++ +l++Lk+  +++  vt+ l  ++n+ + l  k++v
      CCD25361.1  8 NEIDPSEYSLEIKSEINKRKKKTLKNLKKtiVRKGPVTVSLLSSTNESRSLApKREV 64
                    4689************************98888889999999999987777744344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1356  (0.0756317); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 657.79
//
Query:       CCD25362.1  [L=259]
Description: hypothetical protein NDAI_0F00430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-41  141.7   9.4    1.1e-41  141.7   9.4    2.3  2  Kin17_mid    Domain of Kin17 curved DNA-binding protein
    7.2e-07   29.3   4.2    2.8e-06   27.5   4.2    2.1  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
    1.6e-05   25.1   2.8    5.7e-05   23.4   2.8    2.0  1  zf-met       Zinc-finger of C2H2 type
     0.0024   18.2   3.5      0.008   16.5   0.5    2.6  2  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
  ------ inclusion threshold ------
      0.025   15.4   1.1       0.09   13.7   1.1    2.0  1  zf-C2H2_4    C2H2-type zinc finger
      0.047   13.9   0.3       0.44   10.7   0.1    2.2  2  DUF640       Protein of unknown function (DUF640)
      0.069   13.1   0.3       0.23   11.4   0.3    1.9  1  RL           RL domain
       0.13   12.8   2.4       0.31   11.6   2.4    1.7  1  zf-C2H2      Zinc finger, C2H2 type
       0.82    9.8   5.3        3.2    7.9   0.5    2.6  2  zf-DBF       DBF zinc finger


Domain annotation for each model (and alignments):
>> Kin17_mid  Domain of Kin17 curved DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.7   9.4   5.3e-45   1.1e-41       3     126 .]      51     190 ..      49     190 .. 0.97
   2 ?    2.1   0.4     0.089   1.8e+02      77     120 ..     208     251 ..     194     256 .. 0.59

  Alignments for each domain:
  == domain 1  score: 141.7 bits;  conditional E-value: 5.3e-45
   Kin17_mid   3 leliaentkkvieeyskeFekdFlklLrtrhgekkveankvYqeyiqdkdHvhmNaTkwtsLteFvkyLgkegkvkveete................kg 85 
                 l++ia+ t+++ie+ys +FekdFlklL+ +hgek ++ank+Y+e+iqdk+H+hmN+T++tsL++F+kyL+k+gk+k++  +                 +
  CCD25362.1  51 LLKIANVTNEDIENYSVQFEKDFLKLLKLNHGEKPIQANKFYNEFIQDKNHIHMNSTNFTSLNKFIKYLSKNGKIKIHGLQdyikekgndsdnnldmGQ 149
                 67899**************************************************************************977888899999999999** PP

   Kin17_mid  86 llisyidrspealerkeklekkekaekedeereekllekqi 126
                 l+is+id+s+e++ rk+k+++++  ek+++e+++ +l++qi
  CCD25362.1 150 LMISFIDTSSENVLRKQKISEMALLEKTHHEINNIMLQNQI 190
                 ***************************************98 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.089
   Kin17_mid  77 vkveetekgllisyidrspealerkeklekkekaekedeereek 120
                 v++++ +++++++ id  + ++ +++k+++k ++++++++++++
  CCD25362.1 208 VTITDVNQEVHLNEIDPISLTIPSSNKNKSKISKKTKKKKNQTM 251
                 56666667777777776555555554444444444443333333 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   4.2   1.4e-09   2.8e-06       1      26 [.      25      50 ..      25      51 .. 0.93

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.4e-09
                 ECBBTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz  1 qfYCvlCdKyFksenaldnHlkSKkH 26
                 +fYC++C+K++ +en ++ H+kS +H
   CCD25362.1 25 KFYCQICSKQCRDENGFKSHIKSPSH 50
                 7**********************666 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   2.8   2.8e-08   5.7e-05       1      25 []      26      50 ..      26      50 .. 0.97

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.8e-08
      zf-met  1 fyCelCnvtfnsesqlksHlqGKkH 25
                fyC +C +++ +e+ +ksH ++  H
  CCD25362.1 26 FYCQICSKQCRDENGFKSHIKSPSH 50
                8*********************988 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.5     4e-06     0.008      41      87 ..      10      63 ..       5      73 .. 0.75
   2 ?    1.5   0.1      0.19   3.7e+02      67      96 ..      93     119 ..      82     131 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 4e-06
   zf-C2H2_2 41 eylrekiee......kleClyCekefkslealreHmkkkgHc.kineeeeeekk 87
                +yl+++++       k+ C +C+k++++ + +++H+k+ +H  ki++ ++e+ +
  CCD25362.1 10 KYLSKQMKAkglqklKFYCQICSKQCRDENGFKSHIKSPSHLlKIANVTNEDIE 63
                67777777777777799************************7245545544444 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.19
   zf-C2H2_2  67 reHmkkkgHckineeeeeekkeiekfydfl 96 
                 +e +++k+H  +n ++    + ++kf ++l
  CCD25362.1  93 NEFIQDKNHIHMNSTN---FTSLNKFIKYL 119
                 5566777777776543...44455554443 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.1   4.5e-05      0.09       1      22 [.      26      47 ..      26      49 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.5e-05
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlkt 22
                f+C iC+k +++ +++++H+k+
  CCD25362.1 26 FYCQICSKQCRDENGFKSHIKS 47
                89******************97 PP

>> DUF640  Protein of unknown function (DUF640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.25     5e+02      14      49 ..      30      65 ..      17      83 .. 0.81
   2 ?   10.7   0.1   0.00022      0.44      28      63 ..      95     129 ..      81     141 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.25
      DUF640 14 yesqkrrdwntfvrylkakrPPlelarcsgahvlef 49
                  s++ rd n f  ++k+    l++a++ ++++ ++
  CCD25362.1 30 ICSKQCRDENGFKSHIKSPSHLLKIANVTNEDIENY 65
                5678899********999999999999999998876 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00022
      DUF640  28 ylkakrPPlelarcsgahvleflryldqfGktkvha 63 
                 ++ + +  +++++++ + +++f++yl + Gk k+h 
  CCD25362.1  95 FI-QDKNHIHMNSTNFTSLNKFIKYLSKNGKIKIHG 129
                 33.445678999999********************5 PP

>> RL  RL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00012      0.23      20      43 ..     105     128 ..      96     130 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
          RL  20 scpskisekkllkylsqhGkinkh 43 
                 +  + +s +k++kyls+ Gki+ h
  CCD25362.1 105 NSTNFTSLNKFIKYLSKNGKIKIH 128
                 55667899*************977 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.4   0.00015      0.31       1      23 []      26      50 ..      26      50 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00015
                EEETTTTEEESSHHHHHHHHHC..C CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirt..H 23
                ++C +C+k +++   +k+Hi++  H
  CCD25362.1 26 FYCQICSKQCRDENGFKSHIKSpsH 50
                89******************98666 PP

>> zf-DBF  DBF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.5    0.0016       3.2       3      26 ..      25      51 ..      23      60 .. 0.82
   2 ?    3.5   0.4     0.039        77      17      43 ..      93     117 ..      89     119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0016
      zf-DBF  3 sGYCEnCrvkfed...leeHlksekHr 26
                + YC +C+++  d   +++H+ks+ H 
  CCD25362.1 25 KFYCQICSKQCRDengFKSHIKSPSHL 51
                68*****99987655589********7 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.039
      zf-DBF  17 eeHlksekHrkFaenssnfeelDelis 43 
                 +e ++ + H    +ns+nf++l ++i+
  CCD25362.1  93 NEFIQDKNHIH--MNSTNFTSLNKFIK 117
                 56677777776..69********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2171  (0.121089); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1914.76
//
Query:       CCD25363.1  [L=780]
Description: hypothetical protein NDAI_0F00440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.1e-11   42.0   0.0    2.5e-10   40.2   0.0    2.0  1  GTP_EFTU      Elongation factor Tu GTP binding domain
    1.1e-06   28.1   0.6    2.4e-06   27.1   0.6    1.5  1  Gtr1_RagA     Gtr1/RagA G protein conserved region
    9.2e-05   22.5   0.4    0.00043   20.3   0.4    2.2  1  MMR_HSR1      50S ribosome-binding GTPase
     0.0022   18.1   0.1      0.013   15.6   0.0    2.3  2  AAA_33        AAA domain
  ------ inclusion threshold ------
      0.012   15.1   0.8        2.5    7.5   0.0    2.7  2  Arf           ADP-ribosylation factor family
      0.042   14.2   0.5        1.2    9.5   0.2    3.0  2  RNA_helicase  RNA helicase
      0.064   13.3   0.2        0.3   11.1   0.2    2.2  1  AAA_14        AAA domain
       0.08   12.7   0.0       0.27   11.0   0.0    1.8  1  AAA_29        P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.1e-13   2.5e-10       3     182 ..     317     516 ..     315     623 .. 0.77

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.1e-13
                 EEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHT..SCSSCEEEEEE......T.TCSSEEEEEEEESSSGGGHHH.....H CS
    GTP_EFTU   3 irnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErerg..iTiksaaisle......k.etkkylinliDtPGHvdFske.....v 87 
                  +n++++gh  +GK+T+++rLl++++  s ++ + +  ++   +++E++       k+  ++l+      + + ++ ++n+ D P  ++  k+      
  CCD25363.1 317 FLNVILLGHSKSGKSTILGRLLKDLKLLSIEEIRST--KFQLERQQEKNPNslYLAKIGETKLSkdkhyrQiKHENDTFNIFDIPIFRQSRKNnnfqsL 413
                 68**********************999888555553..333333333322212334444444446666543579***********87654443222227 PP

                 HHHHHT-SEEEEEEETT..........TBSTHHHHHHHHHHHHTTTEEEEEEESCGST...HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEE CS
    GTP_EFTU  88 irglrvlDgavlvvdav..........eGvepqteevlrlalkegvpiivfiNKmDrl...kaelkeiveevkqklsrkeeklekygekgekevpvvfg 173
                 i++++++ +a+l +d++          +G   q   +l+   ++  +i++++NKmD +   ++++ ei++e++  +    ++l+     + +e+  +++
  CCD25363.1 414 IATINQCSVAILTIDCNtdqfesnfniDGELIQLIYLLKFSARKLNKIVILLNKMDSIdwyHDRFIEIKTELSLFF----KDLNLCDDPD-NEIVWIPT 507
                 888**************777777777777888888888888888888*************99***********777....6665555554.699***** PP

                 BTTTTBTHH CS
    GTP_EFTU 174 Salkgegvk 182
                 S+l g+g+ 
  CCD25363.1 508 SGLYGQGIV 516
                 ***999875 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.6   1.1e-09   2.4e-06       2     139 ..     320     484 ..     319     508 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.1e-09
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFdnylardtlrlgati..........................dveksevrflgnltlnlwDcgGqeafveeylssqkeeif 74 
                 v+L+G+s+sGK+++   + + +    + ++ +t                           d +  ++  ++n t+n++D++  ++  +++  ++     
  CCD25363.1 320 VILLGHSKSGKSTILGRLLKDLKLLSIEEIRSTKfqlerqqeknpnslylakigetklskDKHYRQI-KHENDTFNIFDIPIFRQSRKNNNFQSLIATI 417
                 89******************************************************98854445555.57888*********99999998888888899 PP

   Gtr1_RagA  75 rnvgvliyVfDvesreleedletlkeilealrqys....peakvfvlihKmDliqedereeifeerkee 139
                 ++++v i  +D++++++e++++   e+++ ++  +    +  k+ +l++KmD i+    ++ f e+k+e
  CCD25363.1 418 NQCSVAILTIDCNTDQFESNFNIDGELIQLIYLLKfsarKLNKIVILLNKMDSID--WYHDRFIEIKTE 484
                 9********************9999999887644311214569**********94..444444445544 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.4   1.9e-07   0.00043       1     113 [.     319     466 ..     319     467 .. 0.52

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.9e-07
                 EEEEEESTTSSHHHHHHHHHT.......................S.TEEESSSTTSSSSEEEEEEEETTEE..........................EE CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltg.......................e.kaivsdkpgtTrdinegrvklkgke..........................ie 49 
                 +v+++G++ +GKSt++ +l++                       + +                       +                          ++
  CCD25363.1 319 NVILLGHSKSGKSTILGRLLKdlkllsieeirstkfqlerqqekNpN-----------------------SlylakigetklskdkhyrqikhendtFN 394
                 5899****************833333333333333333333222122.......................133333333333333333334444444** PP

                 EEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT..........TTCSHHHHHHHHHHHHHTTSEEEEEEE CS
    MMR_HSR1  50 lvDtpGliegaseekglgkaflaleeadlillvvdas..........eeklkpldeeleelleeakkplilvln 113
                 + D+p  + +++++++++  ++ ++++++++l +d++          +++l +l   l ++  ++  +++++ln
  CCD25363.1 395 IFDIPI-FRQSRKNNNFQSLIATINQCSVAILTIDCNtdqfesnfniDGELIQL-IYLLKFSARKLNKIVILLN 466
                 *****8.8866666677777777888*********9954443222221111111.2223332224445555666 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       1.1   2.5e+03     105     123 ..      67      85 ..       6      91 .. 0.76
   2 !   15.6   0.0   5.9e-06     0.013       2     110 ..     320     435 ..     320     441 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
      AAA_33 105 etdeetlkeRlakRaangd 123
                 +++  tl +R ++R+++++
  CCD25363.1  67 HSSAPTLLQRMKARQNTRE 85 
                 5566677777777777654 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 5.9e-06
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqskt.....dytrvldrlyqilnelark.alsagrnvildatnls....rrerarflk 90 
                 v+l G++ sGKst + rllk l+  lls  ++r++ f  ++q+++     +++++ +  +    +  r+ + +     i+d + ++    +++++ +++
  CCD25363.1 320 VILLGHSKSGKSTILGRLLKDLK--LLSIEEIRSTKFQLERQQEKnpnslYLAKIGET-KLSKDKHYRQiKHENDTFNIFDIPIFRqsrkNNNFQSLIA 415
                 7899***************7765..677777777777755554442333344443332.2222333333033344447899997774544567799999 PP

      AAA_33  91 larrlgvpvrivvvetdeet 110
                   ++++v+++ ++++td+++
  CCD25363.1 416 TINQCSVAILTIDCNTDQFE 435
                 99999999999***999876 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0011       2.5       6      37 ..     309     340 ..     304     363 .. 0.80
   2 ?    5.4   0.1    0.0051        11      49     164 ..     382     515 ..     365     520 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0011
                 HGGTT.TTEEEEEEEESTTSSHHHHHHHHHHS CS
         Arf   6 aklklkkkelrilllGLDnaGKtTilkklkle 37 
                 ++l+ k+  l ++llG  ++GK+Til +l ++
  CCD25363.1 309 ENLNIKNPFLNVILLGHSKSGKSTILGRLLKD 340
                 556666677899**************999765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0051
                 EEEEEEETTEEEEEEEE-SSGGGGGG..GGGGCT...TESEEEEEEETT-CT.....THHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHH CS
         Arf  49 nveeleiknlkftvwDvGGqeklRpl..WknYfe...ktdavifvvDsadre.....RleeakeeLkalleeeelkevallvlaNKqDlpealseeelr 137
                   ++++++n +f+++D+   ++ R+   +++  +   +  + i  +D++  +      ++    +L  ll+ +  k  ++++l NK+D  +  +++ ++
  CCD25363.1 382 HYRQIKHENDTFNIFDIPIFRQSRKNnnFQSLIAtinQCSVAILTIDCNTDQfesnfNIDGELIQLIYLLKFSARKLNKIVILLNKMDSIDWYHDRFIE 480
                 5678888899999999887777776411455444010445678899998665444334555566777889999999999*********99888776555 PP

                 HHTTGGG....SS....SSSSEEEEEEBTTTTBTH CS
         Arf 138 ellglee....lk....gkrkleiqkcsavkgegl 164
                  + +l+     l+    +++++  + +s + g+g+
  CCD25363.1 481 IKTELSLffkdLNlcddPDNEIVWIPTSGLYGQGI 515
                 44444332233334455555566666666666665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.2   0.00054       1.2       1      87 [.     320     427 ..     320     440 .. 0.72
   2 ?    1.3   0.0       0.2   4.6e+02      37     103 ..     631     703 ..     592     706 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00054
  RNA_helicase   1 iwlyGpsgeGKStlakeLakall.kkl..............klkkkdsvy......srnpeddfwdgYt.gqevvvidDfgqvkdeenpsdlaelir 75 
                   ++l G+s  GKSt+  +L k+l    +              ++k+ +s+y      ++ ++d+++ + + +++   i+D++  +++ + + ++ li 
    CCD25363.1 320 VILLGHSKSGKSTILGRLLKDLKlL-SieeirstkfqlerqQEKNPNSLYlakigeTKLSKDKHYRQIKhENDTFNIFDIPIFRQSRKNNNFQSLIA 415
                   5789*****************9952.24566888999999966777777722222223467888888887788899999998887766668888888 PP

  RNA_helicase  76 lvsstpyplnma 87 
                   +++ + + + + 
    CCD25363.1 416 TINQCSVAILTI 427
                   888877665555 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.2
  RNA_helicase  37 rnpeddfwdgYtgqevvvidDfgqvkdee..nps...dlaelirlvsstpyplnmasleekg.tlftSkvviv 103
                   r+++  + d Y    v   +Df ++++      s    l++l+++ s+++++l      ek+   + S++v++
    CCD25363.1 631 RKSKIAVADDYVILRVSKLFDFQNDVNVGdfATSiefSLENLCQISSTFQVRLTIFPNIEKErLAIGSSFVLI 703
                   5555566677777777777777776633223333113567899999999999886544444448888888876 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   0.00013       0.3       5      59 ..     320     371 ..     317     397 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
      AAA_14   5 lvitGaRrvGKTtllkqlikell.vkkesilyinldderdkkladpekllelilek 59 
                 +++ G  ++GK+t+l +l+k+l   + e+i   +++ er+++++ p+   +l+l+k
  CCD25363.1 320 VILLGHSKSGKSTILGRLLKDLKlLSIEEIRSTKFQLERQQEKN-PN---SLYLAK 371
                 7899999*************999966677777777766665433.42...222222 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.27      16      39 ..     310     334 ..     301     337 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
      AAA_29  16 tieidlkg.atlltGpsGsGKSTll 39 
                  ++i+    +++l G+s sGKST+l
  CCD25363.1 310 NLNIKNPFlNVILLGHSKSGKSTIL 334
                 555553336899***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1670  (0.0931452); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:01.17
# Mc/sec: 2014.40
//
Query:       CCD25364.1  [L=305]
Description: hypothetical protein NDAI_0F00450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.2e-112  374.0   0.0   3.7e-112  373.8   0.0    1.0  1  Thymidylat_synt  Thymidylate synthase


Domain annotation for each model (and alignments):
>> Thymidylat_synt  Thymidylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  373.8   0.0  2.1e-116  3.7e-112       1     268 []      15     305 .]      15     305 .] 0.94

  Alignments for each domain:
  == domain 1  score: 373.8 bits;  conditional E-value: 2.1e-116
                      HHHHHHHHHHHHH-EEEE-TTSSEEEEEEE.EEEEEEGGGCB----SSST--HHHHHHHHHHHHTT--BTHHHHTTT--TTH.....HHHHHT. CS
  Thymidylat_synt   1 kqYldlvrkileeGeekedRtgtgtisvfg.aqlrfdlsegefPllTtkkvflksvieEllWflsgetnvkeLqekgvkiWd.....ewadee. 87 
                      +qYldl+++i++eGe ++dRtgtgt+s+f+  qlrf+ls+g+fPllTtkkvf+k +i EllWf+sg t+ k+L+++gvkiW+     e++d+  
       CCD25364.1  15 QQYLDLCERIIKEGEFRPDRTGTGTYSLFApPQLRFNLSNGTFPLLTTKKVFTKGIILELLWFISGCTDGKKLSAHGVKIWEgngsrEYLDKLg 108
                      69****************************99**************************************************777774544435 PP

                      ......TB-SSSHHHHHHHBTST........TTSSB-HHHHHHHHHHHSTT-ST-EEE---GGGGGGSSS--SEEEEEEEE..SEE...TEEEE CS
  Thymidylat_synt  88 ......gdlgpvYGkqwrkfkae........egkkidqlakvidqlkenpdsRriivsawnpaeldkmaLppChvlfqfyvkdkke...gkLsl 164
                            gdlgpvYG+qwr+f+a+        +g+++dql++vi +lk+np++Rrii+s wnp +++ maLppChv++qfyv+  ++   +kLs+
       CCD25364.1 109 ltdrreGDLGPVYGFQWRHFGAKyktcdddySGQGVDQLKDVIYKLKKNPYDRRIIMSSWNPPDFPLMALPPCHVFSQFYVNFPTDggkPKLSC 202
                      5555559**************999******9**********************************99**************9444445588*** PP

                      EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT-EEEEEEEEEEEEEEEGGGHHHHHHHHTS---S--EEEE--SSTHSGGG--GGGEEEES--- CS
  Thymidylat_synt 165 qlyqRSaDvflGvpFNiasyalLthmlaqvtglkpgelihtigdaHiYsnhveqvkeqlereprelpklelnkekkvsiedfeledfelenYkp 258
                       lyqRS+D++lGvpFNiasyalLt m+a++++++pge+iht+gdaH+Y++hv++++eq +r+p+e+pkl++n++ k +i+df++edfe+++Y+p
       CCD25364.1 203 LLYQRSCDMGLGVPFNIASYALLTIMIAHICDMEPGEFIHTMGDAHVYKDHVDALNEQTKRTPTEFPKLKINRKVK-DIDDFNFEDFEIVDYHP 295
                      ***********************************************************************97777.***************** PP

                      -SXXXXXXX. CS
  Thymidylat_synt 259 hpkikakvav 268
                      + +i++k++v
       CCD25364.1 296 QARIQMKMSV 305
                      ********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2139.71
//
Query:       CCD25365.1  [L=657]
Description: hypothetical protein NDAI_0F00460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-14   51.7  11.4    5.5e-14   51.7  11.4    3.2  3  Shugoshin_N  Shugoshin N-terminal coiled-coil region
    2.4e-09   36.8   5.9    2.4e-09   36.8   5.9    2.1  2  Shugoshin_C  Shugoshin C terminus
     0.0083   16.3   5.5     0.0083   16.3   5.5    3.8  3  Cnn_1N       Centrosomin N-terminal motif 1
  ------ inclusion threshold ------
      0.014   14.8   0.4      0.014   14.8   0.4    2.4  3  CHZ          Histone chaperone domain CHZ
      0.016   15.5   4.4      0.016   15.5   4.4    2.9  3  TSC22        TSC-22/dip/bun family


Domain annotation for each model (and alignments):
>> Shugoshin_N  Shugoshin N-terminal coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   1.1      0.26   9.2e+02       2      16 ..      10      24 ..      10      36 .. 0.77
   2 !   51.7  11.4   1.5e-17   5.5e-14       1      43 [.      48      90 ..      48      92 .. 0.95
   3 ?   -1.9   0.0      0.91   3.3e+03      15      31 ..     131     147 ..     130     148 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.26
  Shugoshin_N  2 KrkylrqNreLAKsN 16
                 K +yl qN++   s+
   CCD25365.1 10 KTNYLNQNTSTSTSS 24
                 889******986655 PP

  == domain 2  score: 51.7 bits;  conditional E-value: 1.5e-17
  Shugoshin_N  1 lKrkylrqNreLAKsNsalslkirelekevseLlsENlnLRel 43
                 l+  y++qN +LAK Ns+l+lki+e+ek++s+L++EN+ LR++
   CCD25365.1 48 LRSSYSQQNNQLAKENSTLKLKINEMEKKLSQLIQENVILRSN 90
                 5789*************************************96 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.91
  Shugoshin_N  15 sNsalslkirelekevs 31 
                   N + s +i+ +++ ++
   CCD25365.1 131 ENLLPSSRISRYTNDNT 147
                  5666689******9987 PP

>> Shugoshin_C  Shugoshin C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1         2   7.1e+03       4      13 ..       5      13 ..       4      13 .. 0.81
   2 !   36.8   5.9   6.6e-13   2.4e-09       2      25 .]     420     443 ..     420     443 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
  Shugoshin_C  4 sRrarkvvsY 13
                  R + k ++Y
   CCD25365.1  5 LRKC-KKTNY 13
                 6999.88898 PP

  == domain 2  score: 36.8 bits;  conditional E-value: 6.6e-13
  Shugoshin_C   2 RpsRrarkvvsYKEPSLnsKMRRP 25 
                  Rp+R+++k+++YK+PSL++KMRRP
   CCD25365.1 420 RPRRTRGKTIDYKLPSLRAKMRRP 443
                  9**********************9 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   5.5   2.3e-06    0.0083       5      46 ..      52      85 ..      47     116 .. 0.69
   2 ?   -2.0   1.9       1.2   4.3e+03      50      65 ..     198     213 ..     181     227 .. 0.54
   3 ?   -0.8   0.4      0.51   1.8e+03      43      61 ..     259     277 ..     245     288 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.3e-06
      Cnn_1N  5 qeeqidkLkKENFdLKLriyfLeerleklseeqkeellkeni 46
                +++q ++L KEN  LKL+i+++e++l +l +e        n+
  CCD25365.1 52 YSQQNNQLAKENSTLKLKINEMEKKLSQLIQE--------NV 85
                678999********************998772........22 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.2
      Cnn_1N  50 veveslqkelkekkkl 65 
                 +e+++ q+e +e +k 
  CCD25365.1 198 QERQQQQQEQHENDKD 213
                 3334444444444433 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.51
      Cnn_1N  43 kenielkveveslqkelke 61 
                 +en ++ +  ++lq+e+ e
  CCD25365.1 259 DENEDIPTSTKNLQDENFE 277
                 4555555555555555433 PP

>> CHZ  Histone chaperone domain CHZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       1.6   5.7e+03      10      14 ..     313     317 ..     313     317 .. 0.96
   2 ?   14.8   0.4     4e-06     0.014      19      30 ..     422     433 ..     419     435 .. 0.88
   3 ?   -3.1   0.2       1.6   5.9e+03       6      14 ..     515     523 ..     515     523 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
         CHZ  10 DtsNI 14 
                 DtsNI
  CCD25365.1 313 DTSNI 317
                 9***9 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 4e-06
         CHZ  19 RRTRgktiDfak 30 
                 RRTRgktiD++ 
  CCD25365.1 422 RRTRGKTIDYKL 433
                 **********86 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.6
         CHZ   6 LeEIDtsNI 14 
                 L +ID +N+
  CCD25365.1 515 LSPIDDENV 523
                 789**9996 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.049   1.8e+02      28      41 ..      54      67 ..      51      69 .. 0.90
   2 ?   15.5   4.4   4.4e-06     0.016      18      51 ..      65      96 ..      61     105 .. 0.81
   3 ?    0.5   0.1      0.21   7.5e+02      10      36 ..     255     281 ..     251     291 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.049
       TSC22 28 ernseleeENslLk 41
                ++n++l +ENs+Lk
  CCD25365.1 54 QQNNQLAKENSTLK 67
                689**********9 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.4e-06
       TSC22 18 vLkekIkeLeernseleeENslLkalaspeqleq 51
                +Lk kI e+e++ s+l +EN +L+++ s  qle+
  CCD25365.1 65 TLKLKINEMEKKLSQLIQENVILRSNSS--QLES 96
                8***********************6655..4544 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.21
       TSC22  10 fAVrEeVevLkekIkeLeernseleeE 36 
                  +V++e e   +  k+L+++n e eeE
  CCD25365.1 255 ATVNDENEDIPTSTKNLQDENFENEEE 281
                 68999999999999*****99998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3124  (0.174243); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.84u 0.31s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 4253.61
//
Query:       CCD25366.1  [L=353]
Description: hypothetical protein NDAI_0F00470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-38  132.4   0.5      3e-38  131.9   0.5    1.2  1  Brix      Brix domain


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.5   1.7e-42     3e-38       3     192 ..      37     235 ..      35     236 .. 0.89

  Alignments for each domain:
  == domain 1  score: 131.9 bits;  conditional E-value: 1.7e-42
                 T--HHHHHHHHHHHHHCTTSEEEEEEECT.-TTTHHHHHHH-HHHHHHHHHCTCSEEEEEE..S.STTE............EEEEEEEE.CECTGGGST CS
        Brix   3 ktssrlrqllkdlrslmkphtasflkrns.nklkdlvelagvthlellsekndcslfvfelskk.rPng............ptlefkve.nyslmkdlk 86 
                  +++ l+++  dl +l+kp+ + f ++n+ ++++d      +t+le++sekndcsl+v+ +++k r n+            +++e+ v+ ny+l +d++
  CCD25366.1  37 TSNKLLHDITIDLSALKKPDIKRFERKNDvHPFED------TTQLEFFSEKNDCSLLVLSTNSKkRRNNltfirtfgykiyDMVELLVLeNYKLLQDFR 129
                 55666888889***************9889*****......********************9998888899****************999********9 PP

                 TTSTS-TT---EEEEES......HHHHHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES....CCTTT.ECEEEEEEEEEE...E..STTTTECT.. CS
        Brix  87 kakktefgsrPllvfng.....kenfkllksllqdlFrvpkislkspklsglrrvvlftaae...nqetd.ktisfRhYaikl...kksgkklpnleke 173
                 k    ++g +P+++f+g     ++ +k++ksl++d+F+ ++ +l+  + +gl++v+++++a    + e + + ++fR+Y++k+   ++ g+klp     
  CCD25366.1 130 KM-TFNVGLKPMFSFQGaafdvHPVYKQVKSLFMDFFKGESTDLQ--DVAGLQHVISISIAGdfqEGE-TlPNVLFRVYKLKTyrsEQGGRKLP----- 219
                 98.*****************99999*************8888885..4679********954443222.4468*********977777788889..... PP

                 T..EEEEEEESEEEEEEEE CS
        Brix 174 kkerveLeEiGPrfdLklr 192
                    rveLeE GPr+d+k+ 
  CCD25366.1 220 ---RVELEETGPRLDFKIG 235
                 ...**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2577.05
//
Query:       CCD25367.1  [L=659]
Description: hypothetical protein NDAI_0F00480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-51  174.5   5.6    3.7e-51  173.8   4.4    1.9  2  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   4.4     2e-55   3.7e-51       2     204 ..     292     527 ..     291     535 .. 0.83
   2 ?   -1.4   0.0     0.087   1.6e+03     196     214 ..     595     612 ..     570     613 .. 0.71

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 2e-55
  RabGAP-TBC   2 elRgevWklllgyep.....evkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevgYcqGmnd 95 
                 ++R+ vWkll+gy+p     ++++l ++ k++++  +    +++s++ ++++qI+ D+prt p+    + k++q++L+riL+ ++i++p  gY+qG+nd
  CCD25367.1 292 THRPIVWKLLIGYLPantkrQQNFLARKRKEYKDGLDHTFSNHHSRDIPTWHQIEIDIPRTNPQIPLYQFKSVQSSLQRILYLWAIRHPTSGYVQGIND 390
                 59**************9866555555555556666666667777777788*************7799******************************** PP

  RabGAP-TBC  96 ivapll.....................lvsldeee.............aFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeeg 160
                 +v p++                            +             +Fwc+++Ll  +++ d+y++++pg+ +++k l +l+k++d +ly+h+++e+
  CCD25367.1 391 LVTPFYqtfltqylpesqiddvtildpE------TyllpdqtydleadTFWCLTKLL--EQITDNYIHGQPGILKQVKNLSQLVKRIDINLYTHFQKEH 481
                 ******8888666666666665555550......15555555667777*********..**************************************** PP

  RabGAP-TBC 161 ldlelfaikwfltlflrefpletvlrlwDlllege..kfvllrval 204
                 +++ +fa++w+++l++ref++ tv+r+wD++l ++  +++++++++
  CCD25367.1 482 VEFIQFAFRWMNCLLMREFQMPTVIRMWDTYLSETsqEITTTSITI 527
                 *****************************88855523444444444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.087
  RabGAP-TBC 196 kfvllrvalail.klleeel 214
                 +f +++v++a+l k++e+ l
  CCD25367.1 595 EF-HVFVCAAFLiKWSEQ-L 612
                 46.889999955266654.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 4335.76
//
Query:       CCD25368.1  [L=431]
Description: hypothetical protein NDAI_0F00490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-27   94.9  18.9    7.5e-27   94.1  18.9    1.3  1  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1  18.9   4.2e-31   7.5e-27       3     319 ..      11     319 ..       9     325 .. 0.83

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 4.2e-31
  Hyphal_reg_CWP   3 llialalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitstssllalsvtlasatgsieNnGiivf.nseesl 96 
                     +l++l+ a+eis++  ++g+i+++ + +tI+ + +l+i+  + ++f ++l+v  +g+l+++s+     ++vt     g i+N+  i + n  + +
      CCD25368.1  11 ILLTLCQAIEISHDVLQTGSITYN-EPVTIDADKSLKITSGTNVNFMDSLDV--DGNLCVSSNY----INVT-----GAITNSHNIYLyNPGTYS 93 
                     78999******************9.**************************9..9******996....6666.....899999999987888999 PP

  Hyphal_reg_CWP  97 tassyklvgasFeNnGelylagsgsvvastmeits..nsweNnGlivfyqsqrssgtvklgaalgsitNdGqIclknqayqqttsiqGsGCitvg 189
                     ++s  +++++s+ N+ e  l  ++s v +  e+ +  +s+ N+G+i +++      ++++ ++++ i+N+G+I l+  +++ ++s++G GCi   
      CCD25368.1  94 KTSGTNISAKSILNEKEGLLTVQNS-VYQANELFGasDSFINEGIINIET---FFPNMSIYGPGSGIENTGTIALSGGNITLSSSVTGGGCIAFL 184
                     99************76667777776.34444444336*********9975...5567888899*****************************987 PP

  Hyphal_reg_CWP 190 edss.iyisnsllsissdqtiYLadsssslvvesvskpqtfkvagFGngnkigltlpllglvlssisYdsdtgiLtlral.....llsqkFnIGt 278
                      + + +y+ ++    + dqt++L++++   v+  +  +++   +gF +g  i  + +  ++++++++Y+  +g + ++ +       + + + G 
      CCD25368.1 185 GGITtFYLDSTK---EIDQTFWLQEGREFYVIRGSY-TKPLVFRGFNKGSSIRYQGST-KTKIQNWNYNPANGSMVINISssgasSDIINIDFGP 274
                     776505555544...789********9999998888.999**************9995.56789*********99998776664322589999** PP

  Hyphal_reg_CWP 279 GYdsskF.....eivtdagagllsvqngavtYngpvPsrslPsaCq 319
                     GY++s+F     + v+ +g++ ++    +v+Yng+ P+++lPs+C+
      CCD25368.1 275 GYNASLFtvginS-VSITGSDGMMQRYVTVKYNGETPETTLPSECR 319
                     *******554422.3333333335667889***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3014.55
//
Query:       CCD25369.1  [L=717]
Description: hypothetical protein NDAI_0F00500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-65  219.8  12.5    3.5e-65  219.8  12.5    1.6  2  Vps5         Vps5 C terminal like
    7.2e-21   74.3   0.2    2.7e-20   72.4   0.1    2.1  2  PX           PX domain
  ------ inclusion threshold ------
       0.05   14.0   0.1       0.21   12.0   0.1    2.1  1  CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, olig
       0.47   10.2   5.5       0.64    9.8   1.7    2.5  2  VEFS-Box     VEFS-Box of polycomb protein
          1    8.1   3.0        1.5    7.5   3.0    1.2  1  Presenilin   Presenilin


Domain annotation for each model (and alignments):
>> Vps5  Vps5 C terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8   2.0         5   1.8e+04     138     171 ..     274     306 ..     269     312 .. 0.57
   2 !  219.8  12.5   9.8e-69   3.5e-65       2     235 ..     478     714 ..     477     715 .. 0.98

  Alignments for each domain:
  == domain 1  score: -5.8 bits;  conditional E-value: 5
        Vps5 138 qsaeqelskkkeqleKlekaaksqqdklqqlkke 171
                 +++e++   + ++ eK++ +  +q +  +q++ke
  CCD25369.1 274 NESEKNALETNTTMEKTHEQVPDQ-KSKPQIEKE 306
                 556666666666777777775555.333445554 PP

  == domain 2  score: 219.8 bits;  conditional E-value: 9.8e-69
        Vps5   2 sslfkkltssisks.stkfeEqDewFedkkqeldslesqLkkLykaiellvsqrkelasataelakslesLaslelskslsralsqlaeveerikelle 99 
                 +++++k ++ +s+s ++k++E D++F+++ +++d+le+qLk++y+ ++ll++qr+ela a++++ + ++sLa+l+++++ s++l ++ e++++ik +le
  CCD25369.1 478 DAEVNKGFMGMSFSsAPKYTEIDTFFIEQGKSIDDLEEQLKHIYTHLDLLETQRNELAIAMDDFVSLMHSLADLNVTEKSSDVLINFEEIQKEIKVSLE 576
                 578999*******99************************************************************************************ PP

        Vps5 100 rqaeqdvltLgetideylrligsvksvfeqRvklwqkwqsaeqelskkkeqleKlekaaksq..qdklqqlkkeveelerkvqeaekeFeeisetikkE 196
                 r++ q+++ +g  id+y+r+++svk++f+qR+kl++    +e+e +kk+ q eKl+k+ + q  ++kl+ +k e++ l++++  ++++++e++e+ik E
  CCD25369.1 577 RNSLQESIIMGASIDNYMRALASVKAIFNQRAKLGYFSLVVEEERNKKRIQGEKLQKTINPQgdNKKLELIKFEYRLLNTRLRIIRNKWNEVGEKIKLE 675
                 *******************************************************9987666569********************************** PP

        Vps5 197 lerFetervedfknvvekyLesaiesqkevielWetfls 235
                 +++F++e++++f+n++e+ Les ie+qke+ielWetf++
  CCD25369.1 676 VKKFDKEKINEFRNSIEISLESSIEAQKECIELWETFYK 714
                 *************************************97 PP

>> PX  PX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.1   7.6e-24   2.7e-20       5     112 ..     320     427 ..     318     428 .. 0.87
   2 ?   -2.8   0.0       1.7     6e+03      75     102 ..     578     605 ..     540     610 .. 0.66

  Alignments for each domain:
  == domain 1  score: 72.4 bits;  conditional E-value: 7.6e-24
                 EEEEEEEEEE..TTSSEEEEEEEEEETTS.SSEEEEEEEHHHHHHHHHHHHHHHTTSTSTSSSTSGSSSSSCTTSHHHHHHHHHHHHHHHHHHHTSCHH CS
          PX   5 qvsvlerets..gskkhsyylyevelktg.akewtvkRrYsdFeeLhskLlrkfprvkiPplPkkvlfgsvrkkdeefiekrrkgLeeyLqrllnhpel 100
                 +++v ++ +    +++h  y++  e +   +++ +v RrY+dF +L+++L++++ + +iPp P+k+ +++   ++ +fie+rr ++e++L +++++  l
  CCD25369.1 320 KIEVKDPIKVgeLTSMHVEYTIIAESTLIeSSYAQVTRRYRDFRWLYRQLQNNHLGKVIPPPPEKQAIRR---FSGDFIENRRIQMENMLICIATDTIL 415
                 5677888877665556666666555555578*************************************98...************************** PP

                 HHSHHHHHHHHS CS
          PX 101 rnsevlteFLev 112
                 +n++++  FL++
  CCD25369.1 416 QNDPDFLLFLTS 427
                 **********86 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.7
                 TSHHHHHHHHHHHHHHHHHHHTSCHHHH CS
          PX  75 kdeefiekrrkgLeeyLqrllnhpelrn 102
                 ++ +   +  +++++y++ l++ + ++n
  CCD25369.1 578 NSLQESIIMGASIDNYMRALASVKAIFN 605
                 4444455566778888888888877776 PP

>> CPSase_L_D3  Carbamoyl-phosphate synthetase large chain, oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.8e-05      0.21      19      56 ..     486     522 ..     479     560 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.8e-05
  CPSase_L_D3  19 rrglsveeiheltkidpwFLekleelvelekelkkkkk 56 
                    g+s     + t+id +F+e+ +++ +le++lk+  +
   CCD25369.1 486 M-GMSFSSAPKYTEIDTFFIEQGKSIDDLEEQLKHIYT 522
                  4.899999999*********************998754 PP

>> VEFS-Box  VEFS-Box of polycomb protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.7   0.00018      0.64      28      70 ..     197     240 ..     176     245 .. 0.82
   2 ?    0.9   0.1       0.1   3.7e+02      64      80 ..     699     715 ..     678     716 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00018
    VEFS-Box  28 plsleev.dsdeDsedevDdealrlkerqmldeftDvnegekel 70 
                  ++ +   + ++D+++e+++++  l e+ m def+D+  +ek+l
  CCD25369.1 197 EITTQRKsQDNQDNNEEMEEDIDPLGENAMDDEFVDEPLEEKKL 240
                 555444304579*****************************987 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.1
    VEFS-Box  64 negekelmklWnlfvkk 80 
                  e +ke ++lW++f k+
  CCD25369.1 699 IEAQKECIELWETFYKN 715
                 4689**********886 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.0   0.00043       1.5     212     312 ..     179     310 ..     174     395 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00043
  Presenilin 212 paLiYsatvvvlaaeek...kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsse...................................se 272
                 p +++++t++ ++a++    ++++ +s+++++++++ ee+ +   e++ ++e+ ++  ++++                                   + 
  CCD25369.1 179 PHILFDSTTILQHAKRVgeiTTQR-KSQDNQDNNEEMEEDIDPLGENAMDDEFVDEPLEEKKlsdnpngqseqehnilhkvneplyvlspkkgstvnE- 275
                 778999999988776666643333.3444444444444555555666666655555555555566677777778889999999999888765433221. PP

  Presenilin 273 eeseeesseaessaeesseekeseessesseeeeeeeeee 312
                      ++++a +++++ ++++e+ ++++s+ + e+e+e+e
  CCD25369.1 276 -----SEKNALETNTTMEKTHEQVPDQKSKPQIEKEKETE 310
                 .....22222222222222222222222111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1275  (0.0711138); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.26s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 4977.33
//
Query:       CCD25370.1  [L=570]
Description: hypothetical protein NDAI_0F00510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-169  564.8  34.6   2.2e-169  564.5  34.6    1.0  1  Alg6_Alg8  ALG6, ALG8 glycosyltransferase family
  ------ inclusion threshold ------
      0.026   14.8   0.4       0.12   12.7   0.4    2.2  1  DUF5436    Family of unknown function (DUF5436)
        4.5    6.9  12.4        0.2   11.3   6.4    1.9  2  GT87       Glycosyltransferase family 87


Domain annotation for each model (and alignments):
>> Alg6_Alg8  ALG6, ALG8 glycosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  564.5  34.6  3.6e-173  2.2e-169       2     482 ..      40     552 ..      39     554 .. 0.96

  Alignments for each domain:
  == domain 1  score: 564.5 bits;  conditional E-value: 3.6e-173
   Alg6_Alg8   2 lllklllipmyrStDFEvqRnWlaiThslplseWytedlseWtLDYPPlfAYfeyllskvakkvl.dpemlalessrgyesestklFqRltVivsdlll 99 
                 l+lk+ll+p y+StDF+v+RnWlaiT++lpl+eWy+e++s+WtLDYPP+fAYfe+++s+++ kv+ d+ +l++    g+  ++t++FqR++Vi+s++ll
  CCD25370.1  40 LALKILLFPDYYSTDFDVHRNWLAITNKLPLKEWYYEHTSQWTLDYPPFFAYFEWFMSQFVPKVVrDDGCLDI-VPVGQFGWATVVFQRTSVIISEILL 137
                 789**************************************************************9*******.************************* PP

   Alg6_Alg8 100 fipavlllvekakkkskkkkrlvllllillspgllliDhiHFQYNgvllGllllsiaallkkkdlllgallFvllLnfKqialylApayfvylLrkycl 198
                 f+  ++++++k+ k ++++++++++++i+lspg+l+iDhiHFQYNg+l+++l++si+a++++++l l++l+++++L+fK+i+lylAp+yfv+lLr+y+l
  CCD25370.1 138 FVV-LQWFINKS-KDNERTQSFIVATSIILSPGFLIIDHIHFQYNGFLFAILIASIVAAKQERYL-LCGLFYSIALCFKHIFLYLAPCYFVFLLRAYVL 233
                 ***.****9655.5568************************************************.6******************************99 PP

   Alg6_Alg8 199 kkskk........klkvslkrllklgvvvlavfallfgPflasgeqlkqvlsRlFPfkRGLfedyvApNfWalynvvdkvlevvlk............. 276
                 + ++          l +++ +l+klg +vl++f+++f+Pf++   +l+qv++RlFPf+RGL+++y+ApNfWa+y+++dk+++++l              
  CCD25370.1 234 NVKNFkfksykdlILLIQWNNLFKLGGIVLSIFGICFLPFIY---HLPQVFTRLFPFGRGLTHAYWAPNFWAIYSFTDKIATTLLLklpyvhkllckci 329
                 86655999999998899************************7...89***********************************88879************ PP

   Alg6_Alg8 277 ................kaevasltrglvqdvsflvlpeilpkltllltllailpslvklllkpskklfllalvlcalsfFlfsfhVHEKaiLlvllplt 359
                                  +  ++ ++glv+dv f++lp+i pkl+++lt +++l+++v ll++ps+k+f+ +l+lc++++Flf++hVHEKaiLlv++p++
  CCD25370.1 330 khplfpttreeiqsriMEYGNNGSKGLVEDVYFIILPQIIPKLSFILTGFYQLLAVVPLLFDPSFKRFIGSLTLCGMASFLFGWHVHEKAILLVIIPFS 428
                 ************9999889999***************************************************************************** PP

   Alg6_Alg8 360 llalesredlslvlllsvvgtfslfPLlfkdgellikvvltllwllllllslkklvkkslkkkkkkvlldrleklyllsllallvllvllellvlk.kp 457
                 +l++ +r+ l+ ++l+s++g++slfPLl+k++ +lik+++t++w++++++sl+k++k s++ +++ +++drl+ +y+++l+ ++ ++++++ll  k   
  CCD25370.1 429 FLVVCDRRLLTSFMLVSSAGYVSLFPLLYKNDDFLIKTLYTYIWCVIYFFSLRKTTKLSSSVERRIFFFDRLAIIYIIGLVPMVFIIQFIDLLKGKyVI 527
                 **************************************************************9******************888887799988755545 PP

   Alg6_Alg8 458 perlpflplllisvycsvgvfvlfl 482
                  e+++fl l+++svycsvgv+++++
  CCD25370.1 528 FEKFEFLSLMIYSVYCSVGVISSWI 552
                 69*********************97 PP

>> DUF5436  Family of unknown function (DUF5436)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   2.1e-05      0.12      22      79 .]     439     496 ..     415     496 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.1e-05
     DUF5436  22 vtfiltvvhkyvrykphtvandahnlvhlihlihfiiyffiirdvkkkkkkkkeniff 79 
                  +f+l+    yv   p    nd + +  l   i  +iyff +r+  k   + +++iff
  CCD25370.1 439 TSFMLVSSAGYVSLFPLLYKNDDFLIKTLYTYIWCVIYFFSLRKTTKLSSSVERRIFF 496
                 369999999**********************************999988887777776 PP

>> GT87  Glycosyltransferase family 87
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   6.4   3.4e-05       0.2       3     122 ..      85     226 ..      81     307 .. 0.82
   2 ?   -2.5   0.3      0.55   3.3e+03      11      11 ..     424     424 ..     375     467 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.4e-05
        GT87   3 YPPfaallfapla..............llp...yglalalwallnlaalllalrlllrrlgral....asavalalllaalalepvlstlgfGqinlll 80 
                 YPPf+a++ + ++              ++p   +g a++++  ++++   ++l ++l+++  +     +++  + ++ ++l   ++     + q+n++l
  CCD25370.1  85 YPPFFAYFEWFMSqfvpkvvrddgcldIVPvgqFGWATVVFQRTSVIISEILLFVVLQWFINKSkdneRTQSFIVATSIILSPGFLIIDHIHFQYNGFL 183
                 9******99999999999999999888666666888888888777776666666666666666666768888877777788888887778888****** PP

        GT87  81 lllvlldllllrrrrpllaGlliGlaaaiKltPalfll.ylll 122
                 +++++++ ++ +++r ll Gl+ ++a   K++ + ++  y+++
  CCD25370.1 184 FAILIASIVAAKQERYLLCGLFYSIALCFKHIFLYLAPcYFVF 226
                 ******************************9988777765554 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.55
        GT87  11 f 11 
                 +
  CCD25370.1 424 I 424
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 4192.10
//
Query:       CCD25371.1  [L=578]
Description: hypothetical protein NDAI_0F00520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2266  (0.126387); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 3777.88
//
Query:       CCD25372.1  [L=330]
Description: hypothetical protein NDAI_0F00530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-95  318.9   0.0    2.1e-95  318.6   0.0    1.1  1  Cytochrom_C1     Cytochrome C1 family
    0.00073   19.8   0.0     0.0016   18.7   0.0    1.7  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
     0.0066   17.6   0.5      0.026   15.6   0.2    2.1  3  Cytochrom_C      Cytochrome c


Domain annotation for each model (and alignments):
>> Cytochrom_C1  Cytochrome C1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.6   0.0   3.5e-99   2.1e-95       1     217 [.      75     292 ..      75     294 .. 0.99

  Alignments for each domain:
  == domain 1  score: 318.6 bits;  conditional E-value: 3.5e-99
  Cytochrom_C1   1 wsfegifgkfDkaqlqRGlqvykevcsaCHslklvafrnLaelglteeevkalaaeyevkdgpddegemfeRpgkpaDklpspyaneeaaraangga 97 
                   ws++g++++fD+a+++RG+qvy+evc+aCHsl++va+r+++++ ++e+evka+a+e+e++d+pd++g+ ++R gk+aD++p py+ne+aaraan+ga
    CCD25372.1  75 WSHNGPLETFDHASIRRGYQVYREVCAACHSLDRVAWRTMVGVSHSEDEVKAMAEEFEYDDEPDEQGNPKKRIGKLADYIPGPYPNEQAARAANQGA 171
                   9************************************************************************************************ PP

  Cytochrom_C1  98 lppDLsllvkArkggadYiyslLtgY.eeppagvevkegqyyNkyfpggviamakpLsdgqveyedgtpatveqmakDvtaFLaWaaepklearkkl 193
                   lppDLsl+vkAr+g adYi+slLtgY ++pp+gv ++ g++yN+yfpgg+iama++L+d+ veyedgtpat++qmakDvt+FL+Waaep++++rk+l
    CCD25372.1 172 LPPDLSLIVKARHGAADYIFSLLTGYpDDPPSGVVLPPGSNYNPYFPGGSIAMARVLFDDLVEYEDGTPATTSQMAKDVTTFLNWAAEPEHDERKRL 268
                   **************************666999***************************************************************** PP

  Cytochrom_C1 194 glkvilfllilavllylvkrkiwa 217
                   glk++l+l+ l  l+++vk+ +wa
    CCD25372.1 269 GLKAMLILSTLYLLSVWVKKFKWA 292
                   ***********************8 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.7e-07    0.0016       2      42 ..      88     129 ..      87     154 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.7e-07
  Cytochrome_CBB3   2 aaaaGaalykknCasCHgkggag.pslagrdwepdalvdiik 42 
                       +++G ++y++ Ca+CH  + ++   + g  +++d+++++++
       CCD25372.1  88 SIRRGYQVYREVCAACHSLDRVAwRTMVGVSHSEDEVKAMAE 129
                      689**************9777776666666666666666655 PP

>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         3   1.8e+04      59      71 ..      21      33 ..      11      49 .. 0.51
   2 !   15.6   0.2   4.4e-06     0.026       2      24 ..      90     112 ..      89     172 .. 0.64
   3 ?   -2.8   0.0       2.4   1.4e+04      75      88 ..     241     254 ..     217     257 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3
                 HHHHHHHGGGGGG CS
  Cytochrom_C 59 dfekkkltaempa 71
                 ++++++++++++ 
   CCD25372.1 21 AIKQNTSKSKSYS 33
                 3333333333332 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4.4e-06
                  --HHHHHHTTGGGTB-SSSBSSS CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggak 24 
                   rG++++ + CaaCH+++  +  
   CCD25372.1  90 RRGYQVYREVCAACHSLDRVAWR 112
                  69*****99*******9876654 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 2.4
                  T--HHHHHHHHHHH CS
  Cytochrom_C  75 rlteqeiadlaaYL 88 
                    t q ++d++ +L
   CCD25372.1 241 ATTSQMAKDVTTFL 254
                  45677788888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       623  (0.0347482); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2421.92
//
Query:       CCD25373.1  [L=274]
Description: hypothetical protein NDAI_0F00540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-06   27.0   6.9    5.1e-06   26.3   6.9    1.4  1  PHD       PHD-finger


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   6.9   2.8e-10   5.1e-06       1      48 [.     199     245 ..     199     249 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.8e-10
                 SBTTTTSTTSTTSCEEEET..TTS..CEEETTTSSSTHSHHSHHSSTBSSTT CS
         PHD   1 rCavCkkksdeeeelvqCd..gCk..rwfHqkClkppleseekpegewlCek 48 
                 +C +C++     +e++ Cd  +C   +wfH +C++++ +  + p+gew+C++
  CCD25373.1 199 YC-FCQR--PSFGEMIACDniNCPngEWFHYECVGIKPS--SPPKGEWFCSE 245
                 69.****..789*******555*6336**********99..888899***74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 2102.54
//
Query:       CCD25374.1  [L=233]
Description: hypothetical protein NDAI_0F00550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1731.54
//
Query:       CCD25375.1  [L=347]
Description: hypothetical protein NDAI_0F00560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-57  193.0   0.1      7e-57  192.8   0.1    1.0  1  Pkinase          Protein kinase domain
    9.6e-17   61.1   0.1    1.5e-16   60.5   0.1    1.3  1  Pkinase_Tyr      Protein tyrosine kinase
    6.9e-08   32.7   0.0    1.9e-07   31.3   0.0    1.6  2  APH              Phosphotransferase enzyme family
     0.0011   18.6   0.1     0.0019   17.8   0.1    1.4  1  Choline_kinase   Choline/ethanolamine kinase
  ------ inclusion threshold ------
      0.088   12.8   0.0       0.15   12.1   0.0    1.3  1  AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal 
       0.16   10.8   0.0       0.24   10.1   0.0    1.2  1  Pkinase_fungal   Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.8   0.1   2.3e-60     7e-57       1     264 []      50     334 ..      50     334 .. 0.90

  Alignments for each domain:
  == domain 1  score: 192.8 bits;  conditional E-value: 2.3e-60
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEE..EEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdely..lvleyveggeladllerkgsls 96 
                 ye +ek+G+G++++V+++++  ++   ++K +k  + +k     + rEi++l +l+  pniv+l+++++++++ +  l++e ve+ ++++l+     ++
  CCD25375.1  50 YEIMEKVGHGKYSEVFRGIHIMSKSRCVIKALKPVRLRK-----IHREISMLMNLSgGPNIVELLDIVKNQKTKIpaLIFEEVENVDFKQLYP---LFT 140
                 7899******************************99887.....668**********************97776667***************7...79* PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHS CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltg 193
                  +e++ +++q+le+l+y Hs+g++HrD+Kp+Ni+i+  k++lK++D+Gla+ ++ + +++ +v++++   PE+l + ++y+ + D+Ws+G++++ ++++
  CCD25375.1 141 FAELQCYFAQLLEALDYAHSMGVMHRDVKPQNIMINpFKRQLKLIDWGLAEYYHPGVDYNVRVASRYHKGPELLvELKQYDYSLDLWSVGCMIAAIVFK 239
                 ************************************99999*********************************888********************** PP

                 S-STTTSSHHHHHHHHHHTHHHHHHHCT.........SHH...HHHTTS.....................-HHHHHHHHHHT-SSGCCSTTHHHHHTSG CS
     Pkinase 194 kppfsgekgkekvekeldqlekilkilg.........etkeklpeasei.....................seeakdllkkllkkdpkkRltaeellqhp 262
                 ++p+   ++      ++dql++i+k+lg         ++  +lp++++                       +e +dl++kl+++d+++Rlta+e l+h+
  CCD25375.1 240 REPMFRGNS------NTDQLVQITKVLGtkklflyldKYGIELPHEYDTlikqrpripwedfvnvqtplaTPETIDLIDKLVRYDHQERLTAKETLNHK 332
                 999984444......6677777777777433333444444455555444999999******************************************** PP

                 GG CS
     Pkinase 263 yl 264
                 ++
  CCD25375.1 333 FF 334
                 98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.1   5.1e-20   1.5e-16       2     215 ..      51     253 ..      50     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 5.1e-20
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSS..EEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvctkeep..llivteyvkgGdLlkfLrkke 96 
                  e+ +k+G+G++++V++g        ++ ++++K lk        +++ +e++++++l   pniv+ll ++ ++++    +++e v++ d+++      
   CCD25375.1  51 EIMEKVGHGKYSEVFRGIHI----MSKSRCVIKALKPVRL----RKIHREISMLMNLsGGPNIVELLDIVKNQKTkiPALIFEEVENVDFKQL----- 135
                  5789**************99....7788999****76554....569**********999***********55554589********999875..... PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvWsfG 192
                   + +t+ +l ++ +q+ ++++y +s+ ++Hrd+  +N++++  +++ k+ D GLa+  +   +y+++  ++       pE l e k +  + D Ws G
   CCD25375.1 136 YPLFTFAELQCYFAQLLEALDYAHSMGVMHRDVKPQNIMINPfKRQLKLIDWGLAEYYHPGVDYNVRVASRY---HKGPELLVELKqYDYSLDLWSVG 230
                  3558*************************************8577***********9966666655444333...358**998866599999****** PP

                  HHHHHHHTTSSGTTTTSHHHHHH CS
  Pkinase_Tyr 193 vllwEiftlgespypglkneevl 215
                   ++  i+ + e  ++g +n++ l
   CCD25375.1 231 CMIAAIVFKREPMFRGNSNTDQL 253
                  *9999988777777777666655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.74   2.2e+03      30      77 ..      83     127 ..      66     137 .. 0.64
   2 !   31.3   0.0   6.3e-11   1.9e-07     142     226 ..     136     219 ..     114     229 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.74
                 TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE-- CS
         APH  30 paraaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyv 77 
                 p    ++i+re  +l +L++  + + e+l++ ++ +   ++++++e v
  CCD25375.1  83 PV-RLRKIHREISMLMNLSGG-PNIVELLDIVKN-QKTKIPALIFEEV 127
                 45.577888888888888877.446677775433.3333355555555 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 6.3e-11
                 CCHHHHHHHHHHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCCCHCHHHHHH CS
         APH 142 ldlleeleeqvlaalaallpg...elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrswtseldpeflaallr 226
                  + l  ++e +   +a+ll +   + +++++H+D +p+N++++p + ++  +iD+++a + +p +D  v ++s + + +pe+l +l +
  CCD25375.1 136 YP-LFTFAE-LQCYFAQLLEAldyAHSMGVMHRDVKPQNIMINPFKRQL-KLIDWGLAEYYHPGVDYNVRVAS-RYHKGPELLVELKQ 219
                 44.444444.4444555555566699*****************777777.79***************887755.55677877777665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   6.4e-07    0.0019     122     182 ..     139     198 ..     110     203 .. 0.76

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6.4e-07
                     CTHHHHHHHHHTHHHHHHCHGG-EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHHHH CS
  Choline_kinase 122 inledlekelekleklleelespvvfcHnDlqegNillnkeekklvlIDFEYagynyrgfD 182
                     +++++l+  +++l + l+   +++   H D+ ++Ni+ n  +++l lID+  a y   g D
      CCD25375.1 139 FTFAELQCYFAQLLEALD-YAHSMGVMHRDVKPQNIMINPFKRQLKLIDWGLAEYYHPGVD 198
                     444555555555555553.34458889***********************99999888777 PP

>> AcetylCoA_hydro  Acetyl-CoA hydrolase/transferase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.9e-05      0.15      10      73 ..     274     340 ..     268     346 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.9e-05
  AcetylCoA_hydro  10 ke.peeaaelvkngshielsgftavgtakaipky..lakrkvekenvkkkllidlavgavlsagPee 73 
                      +e p+e   l+k+   i + +f+ v t++a p+   l+ + v + + +  +  + +  ++++ +P++
       CCD25375.1 274 IElPHEYDTLIKQRPRIPWEDFVNVQTPLATPETidLIDKLVRYDHQERLTAKETLNHKFFKMDPKD 340
                      5669****************************97446888888888888888888888888888875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0     8e-05      0.24     310     358 ..     146     189 ..     133     206 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8e-05
  Pkinase_fungal 310 ealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDl 358
                     + +++ ++++   +   g++HrD+  +Ni+i+      +r+  LiD  l
      CCD25375.1 146 CYFAQLLEALDYAH-SMGVMHRDVKPQNIMIN----PFKRQLKLIDWGL 189
                     55666666666667.89**************9....3445555666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       347  (0.0193541); expected 358.6 (0.02)
Passed bias filter:                      299  (0.0166769); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2529.72
//
Query:       CCD25376.1  [L=179]
Description: hypothetical protein NDAI_0F00570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   14.8   0.5      0.031   14.4   0.0    1.6  2  Vma12     Endoplasmic reticulum-based factor for assembly of 


Domain annotation for each model (and alignments):
>> Vma12  Endoplasmic reticulum-based factor for assembly of V-ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.7e-06     0.031      77     120 ..      75     117 ..      10     135 .. 0.69
   2 ?   -3.0   0.1      0.38   6.9e+03      80      98 ..     144     162 ..     142     172 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-06
       Vma12  77 lilvlNiliSvva...vffavwialrsartpslpvrvllslvvallV 120
                 ++    +liS+va   ++ a+++ l+ ++     +rvl+sl+ a  +
  CCD25376.1  75 VM----LLISIVAlffSALALYWSLTLYYDCGSDYRVLISLILASFT 117
                 33....455555511166689********************998655 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.38
       Vma12  80 vlNiliSvvavffavwial 98 
                 v  i++S+ +++  + ++ 
  CCD25376.1 144 VTTIVLSICSSTSLLLSGF 162
                 5567777777665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1373.54
//
Query:       CCD25377.1  [L=382]
Description: hypothetical protein NDAI_0F00580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-75  252.3  13.1    4.8e-75  251.7  13.1    1.2  1  RTA1       RTA1 like protein
  ------ inclusion threshold ------
       0.15   11.7   1.3         23    4.7   0.1    3.5  3  PhrC_PhrF  Rap-phr extracellular signalling


Domain annotation for each model (and alignments):
>> RTA1  RTA1 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.7  13.1   5.4e-79   4.8e-75       1     206 [.      75     320 ..      75     321 .. 0.98

  Alignments for each domain:
  == domain 1  score: 251.7 bits;  conditional E-value: 5.4e-79
        RTA1   1 lilGcileviGYigRilsakntskaslgpfiiqivllllaPafiaaaiYmllgrlilllgeelsll.rpklytkiFvvlDvvslllqaaGGglaasass 98 
                 +i++++lev+GYigR++s++n     ++pf++++v+l++aP+f++ +iY++l++li+++g+++sll +p+ y++iF+++D++sl++qaaGGg+a  a +
  CCD25377.1  75 FICTGVLEVLGYIGRTWSHYN--LPAMNPFLLNMVCLTIAPVFTMGGIYYQLAKLIEIYGHRFSLLpSPMAYSFIFIASDIISLAIQAAGGGTAGMAVR 171
                 799******************..347****************************************999****************************99 PP

        RTA1  99 sae.aklGeniiiaGlalQvvvlvvFlllaldFllrvr........................................kskkfkkfllalyaavllili 156
                  ++ a++G+ni++aGla+Qv+++++Fll++++Fl+r++                                        +++ f++f la++aavl+i++
  CCD25377.1 172 VNKsAQTGDNIFVAGLAIQVASMFFFLLFWFQFLFRIYiqvrfehtntkkitkqllmirqseidylyrekfhdlridpDRWVFRYFTLAMTAAVLCIFT 270
                 8888**************************************************************************89******************* PP

        RTA1 157 RsiyRvvElaeGwdgylithEvyfyvLdallillavvllnvfhpgrlfkk 206
                 R++yR++El+eGw+gylithE+yf++Ldal+++la+ ++++fhpg++fk+
  CCD25377.1 271 RCCYRLAELSEGWSGYLITHEWYFIILDALMMTLATTIFTIFHPGFAFKG 320
                 ************************************************97 PP

>> PhrC_PhrF  Rap-phr extracellular signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0    0.0095        85      13      30 ..       8      25 ..       5      27 .. 0.90
   2 ?    4.7   0.1    0.0025        23       7      21 ..     106     120 ..     103     121 .. 0.88
   3 ?   -0.1   0.0     0.078     7e+02       6      21 ..     138     153 ..     136     157 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.0095
   PhrC_PhrF 13 aavFvAatvsANAealdi 30
                ++v +  t  ANA + +i
  CCD25377.1  8 STVLIKDTLPANATTVQI 25
                89999999*******998 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0025
   PhrC_PhrF   7 liCLAlaavFvAatv 21 
                 ++CL +a vF+  ++
  CCD25377.1 106 MVCLTIAPVFTMGGI 120
                 78*********9888 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.078
   PhrC_PhrF   6 lliCLAlaavFvAatv 21 
                 l + +A + +F+A  +
  CCD25377.1 138 LPSPMAYSFIFIASDI 153
                 5567899******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3075.59
//
Query:       CCD25378.1  [L=435]
Description: hypothetical protein NDAI_0F00590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-139  465.8  21.3   1.4e-139  465.6  21.3    1.0  1  Nro1      Nuclear pore complex subunit Nro1
    0.00011   22.1   0.4    0.00033   20.5   0.2    1.8  2  FAST_1    FAST kinase-like protein, subdomain 1
  ------ inclusion threshold ------
      0.024   15.2   1.8        2.5    8.7   0.0    3.2  3  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Nro1  Nuclear pore complex subunit Nro1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  465.6  21.3  2.4e-143  1.4e-139       1     413 []       1     434 [.       1     434 [. 0.88

  Alignments for each domain:
  == domain 1  score: 465.6 bits;  conditional E-value: 2.4e-143
        Nro1   1 makRaLGlgkaakekkqkke..........eseeeeke.stpeaanqltveldeevdaddelaqLkaLwktylksdkdnelvlnGivHECDRllRes.. 86 
                 makR+LGlgk++ +kk++k            se+++   +t++ +nq+++el++ +dad+e++qL++Lwkty++sdkd+e++lnGi+HECDR+lR    
  CCD25378.1   1 MAKRPLGLGKKQAQKKKQKFlkentpevksTSESPTPTsETKTPSNQIQIELQDSEDADNEIVQLNGLWKTYFESDKDDEMLLNGIIHECDRILRLInn 99 
                 9********987666555433323443422122222220233479**************************************************7755 PP

        Nro1  87 .....eeeekkk.........eLsdeFhaiYAlALseLaifkaeeee.kkkkkkvkefFdaAlervdlGlskfpdsellklakakillqripLqyiskl 170
                      ++    +         + +d+++ai+AlALseL+ifk++ ++ ++ +++vk+fFd Al+r++ Gl+ +p+s+llkl+ +killqr+pL+yiskl
  CCD25378.1 100 nnnndKS----EeatklkalvNKDDRYYAIFALALSELTIFKKGSDDdDEMDNEVKQFFDLALQRCQDGLDCIPNSQLLKLVMSKILLQRLPLEYISKL 194
                 5544311....134445555555799****************98766478899********************************************** PP

        Nro1 171 tveskek..kklklselleeakksyevaekeaeealevLqaldDlLdivdnfgkeeeeeeeldsddedeeeeveLeeeHPlyeikesdkenyewlrekl 267
                 +v+ske+  k lkl e++ +ak+++++++++  ++levL++ dDlLdi++nfg+e+++ee+ldsdd++e e + L+++HPly+ +++++++ +wl+e+l
  CCD25378.1 195 NVKSKESkgKYLKLYEQFGKAKENFSIYKNDLPLTLEVLNSTDDLLDIIENFGHEDDIEEGLDSDDDEELEPITLAKDHPLYKFQKNHESDLSWLKEQL 293
                 ****98877899*************************************************************************************** PP

        Nro1 268 ikllenlekkaekeeesallelkrevakklGqsyLkeaeepskvfttlkYddeeeeakelegle....akeaqkialklvkkAlkylekAkdedePetW 362
                 i+l++ ++ +          +l + va+k+G++y+k a+ p + +++l+Y d+e+e++++  ++    +  aq++a++lv + lkyl+kA+ +d+PetW
  CCD25378.1 294 IALFDIMHGS---------DKLIHPVARKIGELYMKFADSPRSQYLKLQYGDDEDEQNSIAAKDkgglVYAAQREAIELVDNSLKYLRKAQVKDDPETW 383
                 *****99885.........479****************************998887776443331222789**************************** PP

        Nro1 363 vdvAEalisLGnlydveskeqEelYkeAEeilkkAnkatnGkyediLenll 413
                 v++AEa+i+ Gnl d+es eq ++Y+eAEeilkkAn+atnGky+diL+nll
  CCD25378.1 384 VQLAEACIEFGNLCDNESIEQKKAYQEAEEILKKANRATNGKYQDILDNLL 434
                 *************************************************96 PP

>> FAST_1  FAST kinase-like protein, subdomain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   5.5e-08   0.00033      18      61 ..     151     194 ..     146     197 .. 0.94
   2 ?   -3.3   0.0       1.5   8.8e+03      28      45 ..     371     388 ..     362     391 .. 0.69

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 5.5e-08
      FAST_1  18 eeFfeklesrlepylsslspeelldavwsLcileqfpeallnkv 61 
                  +Ff+   +r ++ l+ ++++ ll++v+s ++l+++p+++++k+
  CCD25378.1 151 KQFFDLALQRCQDGLDCIPNSQLLKLVMSKILLQRLPLEYISKL 194
                 47***************************************996 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.5
      FAST_1  28 lepylsslspeelldavw 45 
                 l++   + +pe++++++ 
  CCD25378.1 371 LRKAQVKDDPETWVQLAE 388
                 555555667999998865 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.84     5e+03       9      37 ..     156     184 ..     154     185 .. 0.75
   2 ?    8.7   0.0   0.00042       2.5      11      41 ..     368     396 ..     358     398 .. 0.72
   3 ?    4.0   0.2     0.012        70       6      26 ..     407     428 ..     403     433 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.84
      TPR_19   9 eAlalleqalqedpknaearllLAealla 37 
                  Al++ +  l+  p+++ ++l + ++ll+
  CCD25378.1 156 LALQRCQDGLDCIPNSQLLKLVMSKILLQ 184
                 57777777777788888888888888876 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00042
      TPR_19  11 lalleqalqedpknaearllLAeallalgql 41 
                 l++l++a  +  +++e + +LAea+++ g+l
  CCD25378.1 368 LKYLRKA--QVKDDPETWVQLAEACIEFGNL 396
                 4444444..5678**************9996 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.012
      TPR_19   6 dyaeAlalleqa.lqedpknae 26 
                  y+eA ++l++a  + + k+++
  CCD25378.1 407 AYQEAEEILKKAnRATNGKYQD 428
                 5666666666663344555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1103  (0.0615204); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3231.25
//
Query:       CCD25379.1  [L=154]
Description: hypothetical protein NDAI_0F00600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-09   38.3   5.4    2.1e-09   37.3   5.4    1.5  1  zf-AN1    AN1-like Zinc finger
     0.0042   16.3   5.0     0.0042   16.3   5.0    1.4  2  DUF612    Protein of unknown function, DUF612
  ------ inclusion threshold ------
      0.046   13.9   5.3      0.099   12.8   5.3    1.6  1  C5HCH     NSD Cys-His rich domain


Domain annotation for each model (and alignments):
>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   5.4   3.6e-13   2.1e-09       1      38 [.      89     127 ..      89     129 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 3.6e-13
      zf-AN1   1 CsfksCkkkdflp.fkCryCgkvFClkHrlpedHdCkkl 38 
                 C + +C + +    ++C++C+++FC++Hrl e+H+C++l
  CCD25379.1  89 CYYGDCISPIAKFiGECKFCDRQFCSRHRLLETHSCEGL 127
                 88999999995445**********************986 PP

>> DUF612  Protein of unknown function, DUF612
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   5.0     7e-07    0.0042     188     266 ..       7      84 ..       2      98 .. 0.82
   2 ?   -3.1   0.7      0.53   3.2e+03     132     151 ..     133     150 ..     127     153 .. 0.55

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7e-07
      DUF612 188 aapapepktptntpaepaeqvqeitgkknkknkkkseseataapasveqvveqpkvvteephqqaapqekknkknkrks 266
                 + p p+  tp+n+p    ++        nk n + ++se+++ p+s+ +  eqp +  e+ h+    + k nk +k k 
  CCD25379.1   7 TLPLPKAATPANSPKLEGNNNTTTESIENKSN-HETDSETSTLPSSLTNTQEQPLLTKEKSHRVEKNRSKSNKTKKGKK 84 
                 56889999*****9987777666556666665.5789**************************9999999999877653 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.53
      DUF612 132 eqekkeadlkklqaekkkek 151
                 e  kk+ad  kl ae+ k++
  CCD25379.1 133 EMHKKNAD--KLSAERTKNQ 150
                 44455554..5666665544 PP

>> C5HCH  NSD Cys-His rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   5.3   1.7e-05     0.099      13      45 ..     103     133 ..      92     139 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
       C5HCH  13 sfCefCPssFCkeHekGalvasalegrlcCseH 45 
                   C+fC + FC +H+   l +++ eg ++C+e 
  CCD25379.1 103 GECKFCDRQFCSRHR--LLETHSCEGLVSCKEE 133
                 57************9..6999*****999*974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1818  (0.1014); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1147.73
//
Query:       CCD25380.1  [L=697]
Description: hypothetical protein NDAI_0F00610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-50  170.7   0.7    2.8e-50  170.1   0.1    1.6  2  Flavoprotein    Flavoprotein
  ------ inclusion threshold ------
        1.9    6.6  26.6        3.2    5.9  26.6    1.3  1  Nop14           Nop14-like family
        3.4    6.0  12.2        5.9    5.2  12.2    1.3  1  SGT1            SGT1 protein


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       1.5   8.9e+03     100     128 ..     183     212 ..     174     223 .. 0.64
   2 !  170.1   0.1   4.8e-54   2.8e-50       2     158 .]     372     625 ..     371     625 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.5
                   TTEEEEE.--HHCCTCSTCHHHHHHH.HT. CS
  Flavoprotein 100 kpiliaPamnpamyenpqtlknlekl.eeg 128
                    p+ i+ + n++  +   + +nl++l +++
    CCD25380.1 183 SPTSILSSSNTSIATTTTSNNNLKDLnKQN 212
                   466666677777777777777777773344 PP

  == domain 2  score: 170.1 bits;  conditional E-value: 4.8e-54
                   EEEEEE-SSCGGGCHHHHHHHHHH....TTEEEEEEESCHHHHCCHHGGS............................................... CS
  Flavoprotein   2 killgiTGsvaaikalellekLkk....egievqvvltkaAkkfiskeklklaa........................................... 51 
                   +il+g++G+++++k++ +++kL++    +++++qv+lt++A+kf++++++k++                                            
    CCD25380.1 372 HILFGACGTLSVFKIKGMIKKLEEiygrDKVSIQVILTEDATKFFTRKSVKKNCnnnnsnanimnnndcndiaspndivrrtgseasmisrvsstsg 468
                   9**************************99*****************995555448899*************************************** PP

                   ........................................TCSSHHHHHHCTTESEEEEEEEEHHHHHHHHTT--SSHHHHHHHT.HCCTTEEEEE. CS
  Flavoprotein  52 ........................................redpilhielrrwadllviaPasantlakianGiadnlltlilra.takkpiliaPa 107
                                                           r+dp+lhielrrwad+lviaP++an+l+ki +G++dnllt+++ra ++++pi++aP+
    CCD25380.1 469 slpstpmipfkssssptakieipphiqfwtdqdewdvwrqRTDPVLHIELRRWADILVIAPLTANSLSKISLGLCDNLLTSVIRAwNPNFPIFLAPS 565
                   ************************************************************************************************* PP

                   --HHCCTCSTCHHHHHHH..H.T......................GHHHHHHHHHHCHHT CS
  Flavoprotein 108 mnpamyenpqtlknlekl..e.egvtvikPse......gdigkgkmaeieeivgkildkl 158
                   m ++++++  t+k+l+++  e +++tv+kPse      gdig+g+m + +eiv+ki++kl
    CCD25380.1 566 MVSSTFNSTMTKKQLNIIneEmPWITVFKPSEkvmdinGDIGLGGMMDGNEIVDKIVMKL 625
                   *******************879*********99************************986 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  26.6   0.00054       3.2     348     402 ..     631     685 ..     599     696 .. 0.44

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00054
       Nop14 348 eeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdlese 402
                 +e+d+dd+++d+++ e ++  ++e +++d+e+e++++++++e+eded++ ++++ 
  CCD25380.1 631 DEDDNDDDDDDEEEGEVKNITDTEADDDDDEDEDEDDDDDDEDEDEDEAAQQQET 685
                 2222222222222222333333344444444444444444444444443333322 PP

>> SGT1  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  12.2   0.00099       5.9     458     524 ..     629     692 ..     586     696 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.00099
        SGT1 458 Peskeekevsfdvdsflkalekllgskieeeldsddldedssedsdeedeedeeeeeaeeeskeeek 524
                 Pe++++++ + d+d+   +++++ +++ +++ d++d d ++++d+de+++ede  +++e++s  ee+
  CCD25380.1 629 PEDEDDND-DDDDDEEEGEVKNITDTEADDD-DDEDED-EDDDDDDEDEDEDEAAQQQETNSYLEED 692
                 55544444.5577788889999999984444.444555.3333344444444434444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1178  (0.0657036); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                       112  (0.00624686); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.31s 00:00:01.18 Elapsed: 00:00:00.48
# Mc/sec: 4336.00
//
Query:       CCD25381.1  [L=1001]
Description: hypothetical protein NDAI_0F00620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-98  331.6  60.1      1e-98  331.6  60.1    2.4  2  MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family


Domain annotation for each model (and alignments):
>> MAP65_ASE1  Microtubule associated protein (MAP65/ASE1 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   7.5      0.13   2.3e+03     459     565 ..      14     106 ..       1     120 [. 0.51
   2 !  331.6  60.1  5.9e-103     1e-98       1     587 [.     161     866 ..     161     881 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.13
                 XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXX...................XXXXXXXXXXXXX CS
  MAP65_ASE1 459 kTPsklksmskvsssssslkktpsnskslsankntalstanerkrklpsanvisknsaagrakrsllarlnskkasasan..q...nsskllrsPlrpv 552
                 +TP+ ++++  ++ ++ s  +t +++ s+ ++++t ++t+ + + k                       ++ ++ s+s++      ++ k l sPl+  
  CCD25381.1  14 ETPKDSTASIGPHFENNSNSDTMNSKSSMAHSDMTSVTTPSKIENKIV-------------------TISRNLSMSPSKEymTltpVRLKELDSPLKGL 93 
                 555554444444433333344444444444444444444444444433...................22222223333332213459999999999999 PP

                 XXXXXXXXXXXXX CS
  MAP65_ASE1 553 slfpnslnklsek 565
                 sl +n  +++++ 
  CCD25381.1  94 SLTDNLTRTVTTT 106
                 9999999998887 PP

  == domain 2  score: 331.6 bits;  conditional E-value: 5.9e-103
                 ..HHHHHHH....HHHHHHHHHHH......HHHHHHHHHHHHHHHHHHHHHHHHHH.........HHST-----....-SS--SHHHHHHHHHHHHHHH CS
  MAP65_ASE1   1 eilqkekli....sesiknffedl......lseeneieqkilneIaelraeasglk.........siLheepvdvpqsekkelsLlqkkkkldtaleel 80 
                 ei++kekli    sesi++f+ ++      l+ +n+++q++ln+I+e+ ++ sg+          +iL +++++vp s+kk+lsLl+ ++ l++a++++
  CCD25381.1 161 EIISKEKLIfnalSESITTFYIQAekemenLNYTNDKQQQMLNKILEILQDSSGINtipdlyirnAILIQQSKTVPLSPKKPLSLLKMQNSLQKARNYV 259
                 79************************************************************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHTS..............---SS--TSS--HHHHHHHHHHHHHHHH.............................. CS
  MAP65_ASE1  81 rkekaerlaeflelleqlqklceelge..............eplsllidslpkleeleslrkhleelke.............................. 135
                 +k ++++  +fl++ + l++++e +++              +  ++  + +p++++l++l+ ++e   +                              
  CCD25381.1 260 FKDYIPKIVDFLQYTLRLKRYIETIQQhpihdknnnnnnnnNNSEIELSLIPSVSQLNELLAKIESSANdyeiisriiqendkiflkndyfkavsptvv 358
                 ***************************8888877777766444445556677777799999999999999***************************** PP

                 ............HHHHHHHHHHHHHHHHHHHHHHHT----SHHHHHH.......HCT-TTTS-....TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  MAP65_ASE1 136 ............ekerRleeikelkkqIkslmeeLglepktsieedl.......lkesednskklkpltretikkLkllkkeleeqksereeklkdlre 215
                             e+++Rl +i +    I +l + L  ++++++ +           ++++++++l  +++++i++L+++ +++++ +++r+ ++++l +
  CCD25381.1 359 dkikqlinlyenEYNSRLTKIIQRCHHIYKLNNDLCQDMNEQVTKLTssymninAGNNDKKQNNLLLVNNNVIEELEVIFNSYQKTYEKRTRQKNRLLK 457
                 ************9********999999999999999999999999449999988677888899999********************************* PP

                 HHHHHHHHS---HHHHHHHTTTSSSSSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHTC-TTSTSS-........SHHHHH CS
  MAP65_ASE1 216 kikeLWnrLqvpqeeqeafvrensslsqetidaleeEleRLeeLKkknlkklIedlRqeIeelWdkllyseeerkafipvfeele........deelLe 306
                  +++LW++L++++ ++e+f +ens++s+ ti ++e+El+ Le  K+k +kklI+d+ q I+ l ++l++s e   +f++ ++ l+        de +L 
  CCD25381.1 458 DCQCLWTKLKISPVYIEKFKKENSNISETTILNIENELNNLELKKQKIIKKLIQDSLQRIKDLSETLQISSEYILEFSNNINSLIinsqslkdDEIILA 556
                 *****************************************98888899************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-GGGGTSSTSH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS--EETTEEHH CS
  MAP65_ASE1 307 lhElelkqLkeelesnKeilelvekfeslwedeeeLEakskDpsRlnnRGghkiLLkEEKeRkriskhlPkveqeLtekveaweeefgrpFlvdGekll 405
                 ++E e+k+L+e+le++ ++l+l+++f+sl++d+ +LE++skD+sRl++R++hkiLL EEK+Rkr+++h+P+v++eL+ k+e++++ f++pF+ +Ge+l+
  CCD25381.1 557 MCEDEIKDLEEKLEIYTPVLNLIKDFQSLQQDKLFLEDSSKDSSRLLSRNSHKILLNEEKTRKRVTRHFPRVIKELKIKLEQAQQIFDKPFIINGEPLT 655
                 *************************************************************************************************** PP

                 HHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHCXXXX.................XXXXXXXXXX....XXXXXXXXXX..XXXXXXX...XXXX CS
  MAP65_ASE1 406 eiieeqweeleekyqererqksarklkkasqteeeilkgskm.................rtpskrrvta....pkTPsklksmskvssssss...lkkt 480
                 ++i  +++el ++y  r+r + +  l  +  te+++ +++++                 ++p+++  +      kTP + ++ s+  +s+s    l   
  CCD25381.1 656 DVIGREEKELLNRYP-RSRTSITSSL--THATENKLRNTKTSpyriqkrhtsdqggtitIPPNAAIKKHnssmNKTPTRGNMVSQAYRSTSDgviL--- 748
                 **************6.6666666633..3444555555555577777888888888888666654433354436****999999999999996432... PP

                 XXXXXXXXXXXX.XXXXXXXXXX.XXXXXXXXXXX.XXX.............XXXXXX.............................XXXXXXXXXXXX CS
  MAP65_ASE1 481 psnskslsankn.talstanerk.rklpsanvisk.nsa..........agrakrsllarlnskkasasan..........q.....nsskllrsPlrp 551
                    s+s ++ ++ +  s++n++k +kl++++vi k n+           +g+++++l a+          +          +     +  ++ + P+rp
  CCD25381.1 749 ---STSKRHLQGtVSSSSPNRKKiTKLLPPTVIPKrNEIdasshgrnmsQGTKNQQLQAE----------AssmvspllyyKssatrTTMPTASIPIRP 834
                 ...333333344366666666664566666666665544422223333333333333333..........22333333333233344555556667*** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  MAP65_ASE1 552 vslfpnslnklsekerdsvssqikklsskkelkkvk 587
                 ++lfp+sln+ s+++++++    ++ + +  ++ ++
  CCD25381.1 835 TRLFPISLNQRSQQQQQQP----QQPQPQTHIPVLR 866
                 *************975544....4444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2014  (0.112332); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.47
# Mc/sec: 6342.46
//
Query:       CCD25382.1  [L=1133]
Description: hypothetical protein NDAI_0F00630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-32  112.8   0.2    4.1e-32  111.5   0.2    1.7  1  RVT_1            Reverse transcriptase (RNA-dependent DNA pol
    6.1e-31  106.4   0.0    1.5e-30  105.2   0.0    1.7  1  RT_RNaseH_2      RNase H-like domain found in reverse transcr
      1e-30  106.1   0.0    2.4e-30  104.9   0.0    1.7  1  RT_RNaseH        RNase H-like domain found in reverse transcr
    7.7e-18   64.4   1.7    1.7e-17   63.3   0.6    2.1  2  Integrase_H2C2   Integrase zinc binding domain
    7.1e-14   52.0   0.0    1.9e-13   50.6   0.0    1.7  1  rve              Integrase core domain
    8.7e-10   39.0   0.0    2.2e-09   37.7   0.0    1.8  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
    2.6e-09   37.6   0.0    6.2e-09   36.4   0.0    1.7  1  Asp_protease_2   Aspartyl protease
    3.4e-06   26.9   0.0    6.5e-06   26.0   0.0    1.4  1  RVP_2            Retroviral aspartyl protease
     0.0025   18.1   0.5      0.027   14.8   0.0    2.7  3  RVP              Retroviral aspartyl protease
     0.0057   16.9   0.4      0.042   14.1   0.0    2.5  2  zf-H2C2          H2C2 zinc finger
  ------ inclusion threshold ------
      0.053   13.3   0.2       0.88    9.4   0.0    2.8  2  rve_3            Integrase core domain
      0.096   12.3   0.1       0.31   10.7   0.1    1.8  1  DUF2312          Uncharacterized protein conserved in bacteri


Domain annotation for each model (and alignments):
>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.2   2.7e-35   4.1e-32       1     221 [.     239     398 ..     239     425 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 2.7e-35
                 EE-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS
       RVT_1   1 ipKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 
                 ++Kk+ gs R+ +     dy+ ln++++k          ++++p +++               ++ ++a++++klDl +++++vp +e++r++taf ++
  CCD25382.1 239 VKKKD-GSRRLcV-----DYRRLNEITVK---------AKYPIPLIDDL-------------FDQLRGATIFSKLDLVSGYHQVPIAEEDRYKTAFITQ 309
                 689*9.*****55.....***********.........***********.............889********************************** PP

                 .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT-- CS
       RVT_1  99 tklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglk 197
                                          +g+y+++++p+G++++P++f+++mn++lr++       ++++Y DDil +sk++ee+ ++++++ e l+ + l 
  CCD25382.1 310 -------------------------RGQYQWNVMPFGLTNAPATFQRLMNHVLRDYIG----EFCIVYLDDILNYSKTNEEHIKHIRKIMEALRAHHLF 379
                 .........................9*******************************9....59*********************************** PP

                 BEGGG-EEE.....ESSEEETTEE CS
       RVT_1 198 inpeKtklvlftvkseevkyLGvt 221
                  +++K++++l     ++v +LG+ 
  CCD25382.1 380 AKKSKCSFFL-----HQVGFLGHV 398
                 *********6.....*******86 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   9.7e-34   1.5e-30       1      99 [.     463     561 ..     463     562 .. 0.98

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 9.7e-34
  RT_RNaseH_2   1 WteeqekafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgkerpiafaSrklskaernysttekellAivwalkkfrhyllgrkf 98 
                  W e+qe afeklk+al +apvL+++d +++++++tDaSdt+ig++L   +d++   ++a++S++l+ +e n+++ eke++Aiv +l+k+rhyllg+kf
   CCD25382.1 463 WHEQQEFAFEKLKRALLEAPVLKPFDNNLDVVVTTDASDTAIGGTLELYKDGKFYGVVAYMSKALHGHELNWPIREKEFFAIVCCLEKWRHYLLGKKF 560
                  9**************************************************766******************************************** PP

  RT_RNaseH_2  99 t 99 
                  +
   CCD25382.1 561 K 561
                  8 PP

>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   0.0   1.6e-33   2.4e-30       2     105 .]     489     592 ..     488     592 .. 0.95

  Alignments for each domain:
  == domain 1  score: 104.9 bits;  conditional E-value: 1.6e-33
                 TTS-EEEEEEECTEEEEEEEEEETTE..EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS--EEEE-SS--TTTTT----.---HHHHHH CS
   RT_RNaseH   2 pskpfiletDAsddgigavLsqreedgeerpiafaSrklsgaernystiekellAivaalkkfrhylqgrkftvitDhknlkyllskkslngrlarWal 100
                  +  ++++tDAsd++ig+ L   ++ +   ++a++S++l+g+e n+++ eke++Aiv +l+k+rhyl g+kf+++tDh++lky+l+++s + rlarW  
  CCD25382.1 489 NNLDVVVTTDASDTAIGGTLELYKDGKFYGVVAYMSKALHGHELNWPIREKEFFAIVCCLEKWRHYLLGKKFKLYTDHQSLKYVLTERSFKLRLARWWD 587
                 577899****************666555*************************************************************99******** PP

                 HC-XX CS
   RT_RNaseH 101 eLsey 105
                  L++y
  CCD25382.1 588 DLADY 592
                 **998 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.1   6.2e+03      24      44 ..     118     138 ..     115     139 .. 0.81
   2 !   63.3   0.6   1.1e-20   1.7e-17       4      57 ..     696     751 ..     693     752 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.1
  Integrase_H2C2  24 ktlerlrrryyWpgmrkdvkk 44 
                     kt+ + ++ + W ++r+d+ +
      CCD25382.1 118 KTMVQPSELVPWRTIRNDITN 138
                     67777778889*******976 PP

  == domain 2  score: 63.3 bits;  conditional E-value: 1.1e-20
  Integrase_H2C2   4 slrkeilkeaHds..agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     + r+++++ +Hds  agH+G  +t++ l   yyWp+m + +++y k+C++Cqr+k+
      CCD25382.1 696 TIRQTLMHLHHDSllAGHPGSFRTYQNLVHDYYWPNMVSIIEQYTKTCPQCQRTKH 751
                     57999*************************************************97 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   1.3e-16   1.9e-13       3     116 ..     768     879 ..     766     881 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 1.3e-16
         rve   3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpg 100
                 rp + + +D++  ++  +  ++  +lvv+d  ++++  +++++  das++++ll + +   +gv p++++sD+ + +t k + ++ ++l+i+++ft  +
  CCD25382.1 768 RPWSSIGIDFVsGMK--EVHKFNSVLVVIDRLTKMARFIPTKKTLDASDCADLLINHIICHHGV-PDEIVSDRDKLFTGKIWDRLRQRLRIHLKFTTSY 863
                 566777889995555..6666899***************************************9.********************************** PP

         rve 101 rpqdnGkvErfhrtlk 116
                 +p +nG  Er++ t++
  CCD25382.1 864 NPASNGQTERTNDTMR 879
                 **************98 PP

>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   1.5e-12   2.2e-09       6      91 ..      21     107 ..      15     108 .. 0.84

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.5e-12
                      TTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB..TT--EE-TTSTT-EEEEEEEEEE.EETTEEEEEEEEEESS.SSEEEEHHHHH CS
  gag-asp_proteas   6 ngkpvkflvDTGAsstiiseelaerlglsrkedkgkvevktangeveakrvrldsvkiggielrnvsavvlegel.ddlLLGldfLk 91 
                      n +++++l+DTGAss ii ++ a+rl+l++++ +++ + kt++g+ +  ++ ++   i + e   +sa++++ +l ++++LG+ f++
       CCD25382.1  21 NKQKIQALLDTGASSNIIDPTWANRLNLTTRKLTKPIHCKTGDGTMSEITHACKVKFIIDGEPFTLSALIAPFTLtSAIILGMPFIN 107
                      677******************************************977766666444444455559******7753899****9997 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   4.2e-12   6.2e-09       6      90 .]      21     105 ..      15     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 36.4 bits;  conditional E-value: 4.2e-12
  Asp_protease_2   6 nGkpvrfllDTGasttlispelaeklglkvreseltvrvsgaggevkarlvrld.slklggltlknvpalvldlgeeidglLGmdf 90 
                     n +++++llDTGas+++i+p+ a++l+l++r+++ ++  ++ +g+++  ++ ++ ++ + g  +  + al+++   +++++LGm+f
      CCD25382.1  21 NKQKIQALLDTGASSNIIDPTWANRLNLTTRKLTKPIHCKTGDGTMSEITHACKvKFIIDGEPF-TLSALIAPFTLTSAIILGMPF 105
                     667******************************************8877777765888888666.47899999999********98 PP

>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   4.4e-09   6.5e-06      25     122 ..      17     114 ..       3     125 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 4.4e-09
       RVP_2  25 tflvnsipatvLfdsGasHsFiskafvsklklkveaLstpllietPvgssvtakeicksveieiqgiefladlilLd.lkdlDviLgmdWLsknkanid 122
                 t l n +  + L+d+Gas   i  +++++l+l++ +L +p+  +t  +++++  + + +v+  i+g++f+   ++ + +    +iLgm ++ ++   + 
  CCD25382.1  17 TKLANKQKIQALLDTGASSNIIDPTWANRLNLTTRKLTKPIHCKTG-DGTMSEITHACKVKFIIDGEPFTLSALIAPfTLTSAIILGMPFINNHPNILR 114
                 56778888899***********************************.7777655555567777******87655555156778*****99887766555 PP

>> RVP  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.8e-05     0.027       5      92 ..      13     105 ..      10     112 .. 0.71
   2 ?   -1.4   0.0       1.9   2.9e+03      61      97 ..     746     782 ..     729     783 .. 0.73
   3 ?   -1.1   0.1       1.6   2.4e+03      43      78 ..     957     992 ..     942    1000 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
                 SEEEEEETTE.EEEEEE-TTBSSEEEES---S.CE....EEEEEEEETTEEE.EEEEEEEEEEEETTEEEEE..EEEESTTSSSE..EE-HHH CS
         RVP   5 Pllkvkiggk.yieallDtGAdatviseedwP.enwpvkkaetllqGiggat.evqqskaievllieekfrgevsplilpalpvn..ilGrdl 92 
                 P ++ k+ +k +i+allDtGA   +i  +     n   +k ++ ++  +g + + + ++a +v  i +    ++s li p ++    ilG  +
  CCD25382.1  13 PHVTTKLANKqKIQALLDTGASSNIIDPTWANrLNLTTRKLTKPIHCKTGDGtMSEITHACKVKFIIDGEPFTLSALIAPFTLTSaiILGMPF 105
                 788899988879**************8664331344447777778877666557777777777777777666668888886555566777655 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.9
                 EEEEEETTEEEEE..EEEESTTSSSEEE-HHHHCCCT CS
         RVP  61 aievllieekfrgevsplilpalpvnilGrdlLqqlg 97 
                  +++ ++    +g ++pl +p+ p   +G d+++ ++
  CCD25382.1 746 CQRTKHARVLPSGIFQPLAVPYRPWSSIGIDFVSGMK 782
                 4556666666778899***************998876 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.6
                 EEEEEEETTEEEEEEEEEEEEEEETTEEEEE..EEE CS
         RVP  43 aetllqGiggatevqqskaievllieekfrgevspl 78 
                 + + lq i   +++++ +a+ ++ i+ ++r+ v+ +
  CCD25382.1 957 HLQALQNIMVSIQTNMADAQDHQSIHFNKRHRVTNF 992
                 567789999999999999999999999999988765 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.1   1.6e+03      12      36 ..      50      74 ..      47      75 .. 0.76
   2 !   14.1   0.0   2.8e-05     0.042      10      39 .]     718     747 ..     711     747 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.1
     zf-H2C2 12 tallarkYhwlgiketvseVissCk 36
                t +l++  h +  + t se++ +Ck
  CCD25382.1 50 TRKLTKPIHCKTGDGTMSEITHACK 74
                55566666777779999*******8 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.8e-05
     zf-H2C2  10 kltallarkYhwlgiketvseVissCkaCq 39 
                 ++ + l   Y+w++   ++++ +++C++Cq
  CCD25382.1 718 RTYQNLVHDYYWPNMVSIIEQYTKTCPQCQ 747
                 555667777********************9 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00059      0.88       2      30 ..     854     882 ..     853     905 .. 0.88
   2 ?    0.2   0.0      0.44   6.5e+02      17      35 ..    1074    1092 ..    1070    1115 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00059
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdel 30 
                 +i l+++  + P  Ng  E+ n t+r+ +
  CCD25382.1 854 RIHLKFTTSYNPASNGQTERTNDTMRKII 882
                 7899*********************9855 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.44
       rve_3   17 glvEsfngtlrdellneel 35  
                  +l+E++ +t+r+     ++
  CCD25382.1 1074 HLIERVVRTFRNSTCEVQW 1092
                  689********98766555 PP

>> DUF2312  Uncharacterized protein conserved in bacteria (DUF2312)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00021      0.31      15      55 ..     205     245 ..     197     249 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00021
     DUF2312  15 leeEkkaiaedikdvyaeaKseGfdtkvlrkivklrkkdkd 55 
                  eeE+ka+++++kd++++ K +  d      ++ ++kkd +
  CCD25382.1 205 AEEERKALEDELKDLMKDNKTSPSDSPFAAPVIYVKKKDGS 245
                 4899****************999999888888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1133 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       816  (0.0455129); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.48
# Mc/sec: 7169.82
//
Query:       CCD25383.1  [L=261]
Description: hypothetical protein NDAI_0F00640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   25.3   2.6    1.8e-05   24.6   2.6    1.4  1  zf-CCHC    Zinc knuckle
     0.0051   16.5   1.7      0.013   15.2   1.7    1.7  1  zf-CCHC_4  Zinc knuckle
  ------ inclusion threshold ------
      0.067   13.2   1.8       0.11   12.5   1.8    1.3  1  zf-CCHC_3  Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   2.6   3.1e-09   1.8e-05       2      17 ..     211     226 ..     210     227 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 3.1e-09
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                 +C+nCG+ GH +++C 
  CCD25383.1 211 VCFNCGRSGHKSNECR 226
                 8**************7 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   1.7   2.1e-06     0.013      32      48 ..     210     226 ..     208     227 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.1e-06
   zf-CCHC_4  32 sfCyiCgvlGHsdkrCd 48 
                 ++C++Cg+ GH+ ++C+
  CCD25383.1 210 IVCFNCGRSGHKSNECR 226
                 68**************7 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.8   1.8e-05      0.11       3      23 ..     208     233 ..     206     246 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.8e-05
   zf-CCHC_3   3 asaaCQkClkkGHwtYECkn.....a 23 
                   ++C +C+  GH + EC+n      
  CCD25383.1 208 SAIVCFNCGRSGHKSNECRNshgrqP 233
                 5689***************9755433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1828.15
//
Query:       CCD25384.1  [L=151]
Description: hypothetical protein NDAI_0F00650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-51  174.0   4.9    1.6e-51  173.8   4.9    1.0  1  DUF2340   Uncharacterized conserved protein (DUF2340)


Domain annotation for each model (and alignments):
>> DUF2340  Uncharacterized conserved protein (DUF2340)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.8   4.9   8.7e-56   1.6e-51       1     120 []      28     150 ..      28     150 .. 0.98

  Alignments for each domain:
  == domain 1  score: 173.8 bits;  conditional E-value: 8.7e-56
     DUF2340   1 ltvRviksfeyRnvknlvlknvdlktttvkdllelvkeeiktesglkpfrnvkydtlKiytkahgsKttnlvinlddddelilkd...eektLaelgve 96 
                 lt+R+iksf+yRnvkn++l+n++l+t+t++dl+e+v ++++te++l+p+rnv+ydt+Kiyt+ah+sKt nlvin+d+d+++ l+    + k+L+e+++e
  CCD25384.1  28 LTIRLIKSFPYRNVKNIILQNYNLETKTAHDLFEDVLKRVQTEGSLRPYRNVNYDTMKIYTHAHKSKTINLVINFDHDEDWTLDVenaNGKKLSEYDIE 126
                 7**********************************************************************************98777889******** PP

     DUF2340  97 nEtelslfnredYeefkanpeekW 120
                 nEte+slfn++dY efkanp ekW
  CCD25384.1 127 NETEISLFNNKDYIEFKANPIEKW 150
                 ************************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       761  (0.0424452); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1056.88
//
Query:       CCD25385.1  [L=504]
Description: hypothetical protein NDAI_0F00660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      5e-44  150.4   0.0    8.1e-44  149.7   0.0    1.3  1  DUF676          Putative serine esterase (DUF676)
    7.8e-05   22.5   0.0    0.00019   21.2   0.0    1.6  1  PGAP1           PGAP1-like protein
  ------ inclusion threshold ------
      0.045   13.0   0.0      0.074   12.3   0.0    1.3  1  Glyco_hydro_64  Beta-1,3-glucanase


Domain annotation for each model (and alignments):
>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.0   1.4e-47   8.1e-44       3     214 ..      35     243 ..      33     250 .. 0.89

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 1.4e-47
      DUF676   3 kkdhLvVlvHGlqgnsaDlelikeqlekikeklpee..kieflmsennesktfkgidvlgerlaeevlevvkkkkdk.nkkiSfvghSlGgliaraaia 98 
                  + hL++l HGl+g+++++e++k+ l+   ++ ++    i++  +en+  ktf+gi+v+g+r++ e+++++k   +   +k+S+ g+S+Ggl+ar+ i+
  CCD25385.1  35 REAHLFILLHGLWGSYKHMESMKATLRHKLRDTQDTlpIIYYSPKENALFKTFDGIEVVGYRTLFEIISFIKFHPEFkFTKLSVCGYSMGGLVARFLIG 133
                 578***********************997666666666899999****************************88776578******************* PP

      DUF676  99 klkekem...tlkeaikglepvtfitlasPhLGvlysskslinlglalleklkkslsmeqlgltGrdLflkddkdeknsllykllkdekdlkliealkl 194
                  +        +l +++ ++ p+ f+t+a+PhLGv++++++  n   ++l+ l ++l    lg+tGr++fl+     +n +l++l    ++ k+++ l++
  CCD25385.1 134 TIFGDDPmdkELLSVFGEMVPQLFVTFATPHLGVRFYNPL-SNKLRWILDPLLTVLGSSLLGKTGREMFLT----GSNDTLVQL----SSGKYLKGLRK 223
                 99744332542455999**********************9.7777899***********************....89999****....44569999*** PP

      DUF676 195 Fkrrvlyanvvndrivplas 214
                 Fk+r+++anv+ndr+v+++s
  CCD25385.1 224 FKWRIVFANVKNDRTVAFYS 243
                 *******************9 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.2e-08   0.00019       8     109 ..      41     132 ..      37     170 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3.2e-08
       PGAP1   8 lFvpGnagsykqvrslAseaaeayqelrkllknqnkkeldfftvdfneelsaldGrtlldqaeylndaIkyIlslysssekeptsviliGHSmGGivar 106
                 ++++G+ gsyk + s+ ++        +kl + q +  + +++   n  +  +dG  +    + l ++I  I     + e + t++ + G SmGG+var
  CCD25385.1  41 ILLHGLWGSYKHMESMKATL------RHKLRDTQDTLPIIYYSPKENALFKTFDGIEVV-GYRTLFEIISFIKF---HPEFKFTKLSVCGYSMGGLVAR 129
                 788*****************......7788888888889****************9999.34445666666543...468999**************** PP

       PGAP1 107 aal 109
                  ++
  CCD25385.1 130 FLI 132
                 875 PP

>> Glyco_hydro_64  Beta-1,3-glucanase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.2e-05     0.074     111     176 ..     425     490 ..     418     496 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.2e-05
                     TTSTT-TTTT--EEEEEEEE.TTEEEEE---SSEE-S-EEEEEEESSS...-EEEEE-S-HHHHHH CS
  Glyco_hydro_64 111 vtnpsDpnanvnfdfaEftynsaglfaNisyVDfvslplgleltgasgatqtvkglkadglakvca 176
                     +t+ +D + + nf+  Ef+ +++ +  N+s V  + +p+ ++  +a+g+    +gl ++g+++v++
      CCD25385.1 425 ITSDNDDSWEQNFNRLEFDSKRDMMLKNLSSVKWIRIPVYIKAINAHGGIVARSGLDKTGRTSVAN 490
                     67789*******************************************999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3423.67
//
Query:       CCD25386.1  [L=299]
Description: hypothetical protein NDAI_0F00670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.9e-44  149.4   0.3    9.2e-44  148.8   0.3    1.3  1  Sld7_N    Mitochondrial morphogenesis protein SLD7 N-terminal
    2.6e-14   53.1   0.0    5.4e-14   52.1   0.0    1.5  1  Sld7_C    Sld7 C-terminal domain


Domain annotation for each model (and alignments):
>> Sld7_N  Mitochondrial morphogenesis protein SLD7 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.8   0.3     1e-47   9.2e-44       1     123 [.      48     174 ..      48     175 .. 0.92

  Alignments for each domain:
  == domain 1  score: 148.8 bits;  conditional E-value: 1e-47
                 -EEEEEEEEE--GGGTT-EEEEEEEEESS---SSSSE.........EEEEEEEEEEEGGGS-GGGGT.T-EEEEE-S-HHHHHHHHHH--STTEEEEEE CS
      Sld7_N   1 lekvavLklelgekhneivlrDvqLWeeseeeekeik......kvkelkgkflqyvdlsklPlWvrk.keelvcfttssttlayfksKLkkknRgivie 92 
                 l+k+++Lk+ lge+h+e++lrDvqLW e++e +++ +      kv el+g+f+qyvdlsklP+W+r+  +e+vcft+s+ttl+yf+sKLk+k+Rgivie
  CCD25386.1  48 LKKLKILKIGLGERHTELKLRDVQLWIEDNEFHDNRSalpqknKVLELNGNFIQYVDLSKLPFWIRDdAQENVCFTRSATTLSYFSSKLKYKHRGIVIE 146
                 5799**********************8888887777778888899**********************5556**************************** PP

                 E-SSSS--SE..EEEEEEETTEEEEEEEEGG CS
      Sld7_N  93 lskkkekakeeeylvlyrkenevevfeldls 123
                 ++++  +++   ++v+yr++n++++f++d++
  CCD25386.1 147 IISDVPSQE---FIVFYRNANTICWFSIDYT 174
                 ****88755...****************986 PP

>> Sld7_C  Sld7 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0     6e-18   5.4e-14       2      56 ..     227     274 ..     226     293 .. 0.90

  Alignments for each domain:
  == domain 1  score: 52.1 bits;  conditional E-value: 6e-18
      Sld7_C   2 eqnkealsklilagLRlrGlsqseaeeaaekeeykelYhmtykaaeFAlRkelak 56 
                  q++e+l+klil+gLRlrG++++       ++ ++ lY+mt++aaeFA+R+++ +
  CCD25386.1 227 VQFNEILTKLILSGLRLRGIPNT-------NSGFHRLYKMTFDAAEFAHRDQIRR 274
                 599********************.......**********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2383.37
//
Query:       CCD25387.1  [L=1034]
Description: hypothetical protein NDAI_0F00680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.8e-136  453.7   9.9   1.5e-101  340.5   0.3    2.8  3  XRN_M     Xrn1 helical domain
    2.4e-98  328.4   0.0    2.4e-98  328.4   0.0    2.6  3  XRN_N     XRN 5'-3' exonuclease N-terminus


Domain annotation for each model (and alignments):
>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.1   1.7e-38   1.5e-34       2     141 ..     315     457 ..     314     480 .. 0.75
   2 !  340.5   0.3  1.7e-105  1.5e-101      54     443 .]     481     878 ..     472     878 .. 0.83
   3 ?   -4.7   1.5      0.99   8.9e+03      88     131 ..     936     961 ..     928     999 .. 0.33

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 1.7e-38
       XRN_M   2 fdleriiDDfvFlcFFvGNDFLPhlPsLeiregaidlllkvYkkelkklggyltdngevkldrveklvslvgkveekifrkrkeredrkekklakeeea 100
                 fdler+iDD+vF+cFF GNDFLPhlP+L++re++id ll ++k +l++l+ y+t +ge++l+ ve l++++g+ e++if++r+ +e rk++++++++ +
  CCD25387.1 315 FDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKVVLPNLKTYMTCDGELNLESVEMLLKQLGSRESDIFKTRHIQEIRKQESIQRRKLQ 413
                 8*********************************************************************************99999999888888766 PP

       XRN_M 101 skedaaneeaavaeekl..seskvak.saeaeaeaeaeaeaeak 141
                 +++ + n ++++++ ++  ++ ++ak s + +++  +++++e  
  CCD25387.1 414 RQNGNNNFATGQEQLQMhdTSGNLAKgSWNLTTSDMVRLKKELM 457
                 65555444444333333003333333233444444444444433 PP

  == domain 2  score: 340.5 bits;  conditional E-value: 1.7e-105
       XRN_M  54 ltdn.gevkldrveklvslvgkveekifrkrkeredrkekklakeeeaskedaaneeaavaeeklseskvaksaeaeaeaeaeaeaeakaekekr..ek 149
                 lt+n  + ++d+v  l ++ + +  +i +k+ + +++k ++ +k+e+++ ++a++ee+ ++ +kl++++ ++++e+ +e eae e e+++++ +   + 
  CCD25387.1 481 LTKNiSNEEMDKVVDLANKSNFTAAEIMKKKLQARKHKLEEDEKKEKEEGAEAEAEEERSK-KKLKTEEDNLNEEISNEVEAENEDEESSVSGTAtpSA 578
                 4555456688999999999999999999999888887777766666655555555444443.3444444444555555555555544444433320033 PP

       XRN_M 150 aekeleeseeee.eeeDkvrLgeeGykeRYYkekfevsseeieqrre.vvqkYveGLcWvlrYYyqGvaSWkWfyPyhyaPFaSDlknladlkikFekg 246
                 +  ++   +++  ++ + vrL e+Gy+eRYYk+k  vs+e+ie  r+ +v+ Y+eG+ Wvl YYyqG+aSW+W+yPyhyaPFa D+ ++ d+ +kFe+g
  CCD25387.1 579 VVVSNGPIKSGViDTDEAVRLFEPGYRERYYKAKCYVSDEDIESLRKgMVKSYIEGVSWVLLYYYQGCASWNWYYPYHYAPFAQDFFGITDMDVKFELG 677
                 333333334433144557*************************99999*************************************************** PP

       XRN_M 247 spfkpleqLmavlPaaskkalPkayqkLmtdpdSpiidlypedfeidlnGkrvaWqgvaklPfidekrLlealakleeeLteeEkkRNtrksdvlfvsk 345
                 +pf p+eqLm+vlPaas + lP+ ++ Lm++pdSpiid+yp +f id+nGk+++Wqg+ +lPfidekrLl+++++ +++Lt+ Ek RN rk+ vl++s+
  CCD25387.1 678 EPFLPFEQLMSVLPAASGHTLPSIFRPLMSEPDSPIIDFYPAEFPIDMNGKKMSWQGISLLPFIDEKRLLKTVREQYPKLTDYEKSRNVRKEAVLLISN 776
                 *************************************************************************************************** PP

       XRN_M 346 tskkaeallaklseke..kdeeklkideklseglngslala.eeavvekklssplk..elediednkvlcvkyel.Pkkddyvhiaellpgvvlpekvl 438
                 +++++e++++kl+++   k e+ + + ++  +gl+g++++  e ++ ++k+  p++  +l+d++ n++l ++y+l P     + +++ l+g + pe+vl
  CCD25387.1 777 KNANYEKFTKKLYKSVdgKIETAELLFHHFKSGLSGIVCTDsEGFTLGSKILCPVQggSLPDLSTNSLLKMTYKLlPLP--SRNKSVILNGYIPPERVL 873
                 *********9999876223444556677899********99569999999999**9999**************972555..4799************** PP

       XRN_M 439 keeDl 443
                 ++ Dl
  CCD25387.1 874 NQYDL 878
                 99885 PP

  == domain 3  score: -4.7 bits;  conditional E-value: 0.99
       XRN_M  88 drkekklakeeeaskedaaneeaavaeeklseskvaksaeaeae 131
                 +++++++++ +                   ++ +++ ++ ++ +
  CCD25387.1 936 QQYHQQQQNVNI------------------TSGNTQYTNGTRYQ 961
                 111111111111..................11111111111111 PP

>> XRN_N  XRN 5'-3' exonuclease N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.4   0.0  2.7e-102   2.4e-98       1     241 [.       1     253 [.       1     254 [. 0.90
   2 ?   -0.4   2.7     0.072   6.4e+02     103     138 ..     513     559 ..     504     581 .. 0.44
   3 ?   -5.7   1.9         2   1.8e+04     103     119 ..     932     948 ..     930     975 .. 0.47

  Alignments for each domain:
  == domain 1  score: 328.4 bits;  conditional E-value: 2.7e-102
                 XXX-HHHHHHHHHSGGGEEE------..............SSSS.-EEEEEEETHHHHHHHHS-SSS-......--SSHHHHHHHHHHHHHHHHHHH-E CS
       XRN_N   1 mGvpklfrwlserypkivkevieeee..............eeek.efdnLYlDmNgiihkcshkedkeekelskkpkteeeifkkifkyidrlvkivrp 84 
                 mGvp++frwls++ypki++ v ee+               ++++ e+dnLYlDmNgi+h+csh+e+      +  p+te+e++ ++f+y +r+++++rp
  CCD25387.1   1 MGVPSFFRWLSRKYPKIISPVLEEQPqivdnvklpldyslPNPNgELDNLYLDMNGIVHPCSHPEN------KPPPETEDEMLLAVFEYTNRVLNMARP 93 
                 9********************984445677777888888877777*******************44......4599*********************** PP

                 EEEEEEE------HHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHT-BB--------GGGSSTTSHHHHHHHHHHHHHHHHHHHH-GGGGG-E CS
       XRN_N  85 rkllylavDGvaPraKmnqqRsRRfrsakeakeekeekeel...keelekeekeeeeeeekfdsnvitpGtefmeklsealkafikkklkedpawknlk 180
                 rk+l++avDGvaPraKmnqqR+RRfrsa++a+ e+e++ee    kee+ +  ++  ++++++dsn+itpGt+fm+kl++al+++++ kl +dp wk+l+
  CCD25387.1  94 RKVLVMAVDGVAPRAKMNQQRARRFRSARDAQIENEAREEIlrqKEEIGEMIDDAVKNKKTWDSNAITPGTPFMDKLAAALRYWTAFKLATDPGWKSLQ 192
                 ********************************998854444000444444444555999**************************************** PP

                 EEEE-TTS-S-HHHHHHHHHHHHHTSTTS-TT-EEEEE---THHHHHHHHHT-SSEEEEEE CS
       XRN_N 181 vilsdaevpGEGEhKimefirkqrskpeydpntrhviyglDaDLillsLathepniliLre 241
                 vi+sda+vpGEGEhKim+fir+qr++pey+pnt+h+iyglDaDLi+l+Lathep+++iLre
  CCD25387.1 193 VIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLGLATHEPHFKILRE 253
                 ************************************************************9 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.072
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-BB-...........- CS
       XRN_N 103 qqRsRRfrsakeakeekeekeelkeelekeekeee...........e 138
                 q R+ + ++ +++++e+ +++e++ee +k++ ++e           +
  CCD25387.1 513 QARKHKLEEDEKKEKEEGAEAEAEEERSKKKLKTEednlneeisneV 559
                 44444444444444443322222222222222222233344444443 PP

  == domain 3  score: -5.7 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHHHHH CS
       XRN_N 103 qqRsRRfrsakeakeek 119
                 qq++ ++++++++ + +
  CCD25387.1 932 QQQQQQYHQQQQNVNIT 948
                 34444444433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2552  (0.142339); expected 358.6 (0.02)
Passed bias filter:                      713  (0.039768); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.30s 00:00:01.33 Elapsed: 00:00:00.47
# Mc/sec: 6588.50
//
Query:       CCD25388.1  [L=482]
Description: hypothetical protein NDAI_0F00690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-74  250.6   0.2    1.1e-74  250.6   0.2    2.8  4  STD1      STD1/MTH1


Domain annotation for each model (and alignments):
>> STD1  STD1/MTH1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   2.6      0.18   3.3e+03      10      36 ..      49      76 ..      18     139 .. 0.58
   2 ?   -2.4   0.1      0.17   3.1e+03       8      38 ..     122     154 ..     115     163 .. 0.47
   3 !  250.6   0.2   5.9e-79   1.1e-74       3     205 .]     165     373 ..     163     373 .. 0.96
   4 ?   -2.2   0.3      0.15   2.6e+03     157     179 ..     437     459 ..     431     461 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.18
        STD1 10 ssiesapsyessetee.dsidlqvksll 36
                ssi ++++y++++ ++ +s +++ + +l
  CCD25388.1 49 SSIPEENNYYNNASHNgSSSTVESQGYL 76
                3444444444444442222222222222 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.17
        STD1   8 sqssiesapsyessetee..dsidlqvksllsd 38 
                 +++si ++++ ++++ ++  +si++ + s  s+
  CCD25388.1 122 NKKSIPTNNTTNHNSDNHprSSISTGTISNNSS 154
                 444555544443333332235555444444444 PP

  == domain 3  score: 250.6 bits;  conditional E-value: 5.9e-79
        STD1   3 lsssssqssiesapsyesseteedsidlqvksllsdilledalpkqqkklddmynpeelkksllndellyngrpe....eLiDWelNkiRSlLileklP 97 
                 ++ ss+qssi+s+ps   +et+ ++    + +++++i+ledalpk   +++dmy pe l++++ n  l+yngrp+    eL+DW+lN+iRSlLi+ekl 
  CCD25388.1 165 NA-SSYQSSIFSHPSTVVTETT-NDSLPIIPKYVTEITLEDALPK---TFYDMYPPEVLMSDPSN--LFYNGRPKftkrELLDWDLNDIRSLLIVEKL- 255
                 55.99*********99999988.555666799*************...***************99..*********9877******************. PP

        STD1  98 srpewgnslpeiv....kslpqfrfvlLpldssdeeiietLvsSdlYkEhnldysfklsvAkysvkkarklqeqs.......kelskpewrnIirnYLl 185
                  rpewgn+lp+i+     + pqfr++lLpl s d++ii+tLv+SdlY E+nldy+fk+++Aky+v++ark++eq        ++lskpewrnIi+nYLl
  CCD25388.1 256 -RPEWGNQLPTIIatngMNVPQFRLQLLPLRSMDNFIIKTLVESDLYLEANLDYEFKVTSAKYTVASARKRHEQItglnepiMNLSKPEWRNIIENYLL 353
                 .************9999899******************************************************************************* PP

        STD1 186 nLAveaqcrreykeklkekk 205
                 n+Aveaqcr+++k++++e+k
  CCD25388.1 354 NIAVEAQCRFDFKQRCSEFK 373
                 *****************987 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.15
        STD1 157 svkkarklqeqskelskpewrnI 179
                 s++k+ ++q+   +l+k+e++nI
  CCD25388.1 437 SINKSMEQQNVKISLTKEEKANI 459
                 78888888888899999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1164  (0.0649228); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3394.30
//
Query:       CCD25389.1  [L=376]
Description: hypothetical protein NDAI_0F00700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.1e-36  123.4   0.1    1.2e-35  122.8   0.1    1.3  1  DEAD        DEAD/DEAH box helicase
    1.1e-27   96.5   0.0    2.8e-27   95.3   0.0    1.7  1  Helicase_C  Helicase conserved C-terminal domain
    1.2e-06   28.7   0.0    2.8e-06   27.4   0.0    1.6  2  ResIII      Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.048   13.4   0.0      0.088   12.5   0.0    1.4  1  AAA_30      AAA domain
       0.12   12.7   0.2       0.46   10.8   0.2    2.0  1  AAA_22      AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.8   0.1   3.5e-39   1.2e-35       2     175 ..       8     172 ..       7     173 .. 0.89

  Alignments for each domain:
  == domain 1  score: 122.8 bits;  conditional E-value: 3.5e-39
                 HHHHHHHHHHHTT..CEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTC CS
                 xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgg..gdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngv 98 
                 +iQ++a+pl+l++  ++++++ + G+GKT+af++ +l++v + ++ + ++a++++P+reLa+qtl+ +++++k+++++ +li+  ++ ++ +++    +
  CCD25389.1   8 KIQERALPLLLHNppRNMIAQSQSGTGKTGAFSLTMLSRV-DVNEPNVTQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP-DSFERGQKVT---A 101
                 79*********66569*********************999.44899999*************************9988888876.4554444444...8 PP

                 SEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  99 divvgtpgrlddllstgklnlsqvrflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkk 175
                 +i+vgtpg l+dl++++ ++ls+++++VlDEad++ld+ g +d++ r+ + l       +++ q++++SAT+ + v+k
  CCD25389.1 102 QILVGTPGSLLDLMRKKLIELSKIKIFVLDEADNMLDKqGLGDQCIRVKKFL-------PKSTQLVLFSATFDDAVRK 172
                 **************9999*******************99********99999.......56778********988765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.0   7.7e-31   2.8e-27       3     111 .]     210     323 ..     208     323 .. 0.87

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 7.7e-31
                 HHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHH...HHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSS.... CS
  Helicase_C   3 leallellkleeeggkilifvntidrlekvkll...lekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlp.... 94 
                 +e l+el+      g ++ifv +++++   +ll   l+k+g +v +lh++l++++r++ +++f++g+s+vLi+t+v++rGidip v++V+n+dlp    
  CCD25389.1 210 YEVLCELY-GLLTIGSSIIFVAKKQTA---NLLygkLRKEGHTVSILHSDLQTSDRDRLIDEFREGKSKVLITTNVLARGIDIPTVSMVVNYDLPttkt 304
                 56666665.55678899********99...5555555788*******************************************************7766 PP

                 ..SSHHHHHHHHTTSSSTT CS
  Helicase_C  95 ..rnvtsyiqriGRtgRag 111
                    ++++yi+riGRtgR+g
  CCD25389.1 305 gePDPATYIHRIGRTGRFG 323
                 66668************86 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   7.9e-10   2.8e-06      22     170 ..      20     167 ..       3     168 .. 0.80
   2 ?   -3.9   0.0       3.4   1.2e+04     102     118 ..     335     351 ..     330     358 .. 0.73

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 7.9e-10
                 .TTSEEEEEESTTSTHHHHH.HHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH CS
      ResIII  22 krdkrglikmaTGtGKTlva.aklierllkkgkee.kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldads 118
                 +  ++++ +   GtGKT    + +  r+  ++++  +++ l+p+++l  qtle ++++ + ++  +++ +  d+ ++  +++ +++ilv t  sl   +
  CCD25389.1  20 NPPRNMIAQSQSGTGKTGAFsLTMLSRVDVNEPNVtQAICLAPSRELARQTLEVVQEMGKFTK-ITSQLIVPDSFER--GQKVTAQILVGTPGSLLDLM 115
                 6677888999*******9985666666665555447*********************999985.5888899999988..99*****************9 PP

                 ........HHHTTT-SEEEEETGGGTTS.T....TTHHHHHT---.SEEEEEESS-S CS
      ResIII 119 eeeeeeseellrdrfdviiiDEaHrlgakk....swreilekfke.avllglTATpe 170
                       ++  + +++++++ DEa ++ +k+    +  ++++ +++   l+ ++AT++
  CCD25389.1 116 -----RKKLIELSKIKIFVLDEADNMLDKQglgdQCIRVKKFLPKsTQLVLFSATFD 167
                 .....78888999999***********9845444777878887552666789**986 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 3.4
                 ..-SEEEEEHHHHHHTH CS
      ResIII 102 tnkkilvttiqsldads 118
                 +++  +++ iq+++ d+
  CCD25389.1 335 KKSFSILAAIQKIYDDM 351
                 55666788888888877 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.5e-05     0.088       5      97 ..       9     133 ..       6     151 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.5e-05
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKt..talkalreaweaag..grviglAptgkaAkv.La..eelgieastiakllkrlk............... 81 
                  Q++a+  ll+++ r ++++   GtGKt  ++l+ l ++  ++    + i lAp+ + A++ L+  +e+g  ++ + +l+                   
  CCD25389.1   9 IQERALPLLLHNPPRNMIAQSQSGTGKTgaFSLTMLSRVDVNEPnvTQAICLAPSRELARQtLEvvQEMGKFTKITSQLIVPDSfergqkvtaqilvgt 107
                 5999999*********************5555677777777774469999*******999866544344444444444443333445555555555555 PP

      AAA_30  82 ..........grarlepgtllivDEa 97 
                           +  +l++ ++++ DEa
  CCD25389.1 108 pgslldlmrkKLIELSKIKIFVLDEA 133
                 56666666554445555577777777 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   0.00013      0.46      14     104 ..      31     138 ..      26     165 .. 0.56

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
      AAA_22  14 sGtGKT..tllrrlleqldeeakaee.....erpevvfvtlpsstsskdllrellralglelka..........erlsseellealeqalraraviell 95 
                 sGtGKT  ++l +l + +++e++ ++     +++e+++ tl +  +  ++ +++ ++l ++ +             ++   ll+++++ l + ++i+++
  CCD25389.1  31 SGTGKTgaFSLTMLSRVDVNEPNVTQaiclaPSRELARQTLEVVQEMGKF-TKITSQLIVPDSFergqkvtaqiLVGTPGSLLDLMRKKLIELSKIKIF 128
                 66666633333333333333333333444443333333333333322222.444444444444466666677776677888999999999999999*** PP

      AAA_22  96 iiDEaqh.lr 104
                 ++DEa++ l+
  CCD25389.1 129 VLDEADNmLD 138
                 *******553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2824.87
//
Query:       CCD25390.1  [L=68]
Description: hypothetical protein NDAI_0F00710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-26   91.4   1.1    2.4e-26   91.0   1.1    1.2  1  Tom6      Mitochondrial import receptor subunit Tom6, fungal


Domain annotation for each model (and alignments):
>> Tom6  Mitochondrial import receptor subunit Tom6, fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   1.1   1.3e-30   2.4e-26       3      45 .]      26      68 .]      24      68 .] 0.96

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 1.3e-30
        Tom6  3 kkkSkfeqfketPaftvllnvaLFvaGVaFIqSpLmdmLaPqL 45
                ++kS+f+qfke+Paftvlln++LFvaGV FIqSpLmdmLaP L
  CCD25390.1 26 SNKSRFQQFKESPAFTVLLNGTLFVAGVTFIQSPLMDMLAPAL 68
                789**************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       215  (0.0119917); expected 358.6 (0.02)
Passed bias filter:                      179  (0.00998383); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.21s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 515.23
//
Query:       CCD25391.1  [L=213]
Description: hypothetical protein NDAI_0F00720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.36   10.0   2.5       0.17   11.0   0.5    1.5  2  Herpes_LMP1  Herpesvirus latent membrane protein 1 (LMP1)


Domain annotation for each model (and alignments):
>> Herpes_LMP1  Herpesvirus latent membrane protein 1 (LMP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5   9.6e-06      0.17     168     220 ..      55     112 ..      19     126 .. 0.64
   2 ?   -3.5   0.1      0.25   4.4e+03     311     320 ..     168     177 ..     141     192 .. 0.50

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 9.6e-06
                  XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX-E...E-S--XXXXXXXXXX CS
  Herpes_LMP1 168 lvdllwlllflailiwmy..yhgqrhsdehhhddslphpq...qatddsghesdsnsn 220
                    d++  l  l   +w y  y+gqr+   h+    l + q   q+tdd  h+ + n +
   CCD25391.1  55 SFDVFLYLYRLLQYLWKYqiYKGQRRRHSHKWKIQLGKVQkrnQTTDDGSHKHEHNGK 112
                  334444444455556766569***9999999888776654333899**9999988865 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.25
                  XXXXXXXXXX CS
  Herpes_LMP1 311 sdsagndggp 320
                  s +  +dg  
   CCD25391.1 168 SSCHSDDGDA 177
                  1222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1635.17
//
Query:       CCD25392.1  [L=562]
Description: hypothetical protein NDAI_0F00730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.087   13.0   1.1       0.55   10.4   1.1    2.3  1  Kri1_C    KRI1-like family C-terminal


Domain annotation for each model (and alignments):
>> Kri1_C  KRI1-like family C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.1   3.1e-05      0.55      28      66 ..     194     234 ..     191     270 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.1e-05
      Kri1_C  28 YrevspesFgLtareILladDkeLnefvglkklap..Yrdk 66 
                 Y  v +e+F+ +++eI++ +D+ L++f+g  kla+  Y ++
  CCD25392.1 194 YYCVPQEEFQFEPNEIFENKDDLLQHFMGQIKLAAgsYLTE 234
                 78899************************999985225555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1711  (0.095432); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 3872.57
//
Query:       CCD25393.1  [L=483]
Description: hypothetical protein NDAI_0F00740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-10   39.2   0.0    7.2e-10   38.4   0.0    1.5  1  CUE       CUE domain


Domain annotation for each model (and alignments):
>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0     4e-14   7.2e-10       3      42 .]     124     163 ..     122     163 .. 0.95

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 4e-14
                 HHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHCC CS
         CUE   3 qmletLkemFPdldeevIravLrasngnvEatinaLLegs 42 
                   l +Lke+FP+++e +++av +as+g +++++naLL++s
  CCD25393.1 124 PILTQLKEAFPNIEEKYVKAVIIASQGVLDPAFNALLYLS 163
                 6799*********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1214  (0.0677115); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3411.91
//
Query:       CCD25394.1  [L=268]
Description: hypothetical protein NDAI_0F00750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      2e-18   66.7   0.1    3.4e-18   65.9   0.1    1.4  1  HAGH_C         Hydroxyacylglutathione hydrolase C-terminus
    1.9e-07   31.3   0.2    2.4e-06   27.7   0.2    2.1  1  Lactamase_B    Metallo-beta-lactamase superfamily
    0.00099   18.7   0.1     0.0017   17.9   0.1    1.5  1  Lactamase_B_2  Beta-lactamase superfamily domain
  ------ inclusion threshold ------
       0.13   12.6   0.1        1.9    8.8   0.1    2.1  2  Gp-FAR-1       Nematode fatty acid retinoid binding protein (


Domain annotation for each model (and alignments):
>> HAGH_C  Hydroxyacylglutathione hydrolase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   0.1   7.5e-22   3.4e-18       1      79 [.     182     267 ..     182     268 .] 0.93

  Alignments for each domain:
  == domain 1  score: 65.9 bits;  conditional E-value: 7.5e-22
      HAGH_C   1 EYtlsNlkFalsv....epdnealkkrlkevkelrakgeptvpstladEkktNpFLRldepevqkavg.ee.....vevfaaLRelKdn 79 
                 EYt+sN+kF+++       +neal++++k ++++   + +++ +t+ dE+k+NpF+Rld+p v+kavg ++      +v+++LR+lK++
  CCD25394.1 182 EYTKSNVKFIREYvyqeLGENEALDNLEKYADKH---EMTCGEFTIDDELKYNPFMRLDDPLVRKAVGdDDsswkrSKVMETLRKLKNS 267
                 9**********997877779**********9999...7899***************************64489**************96 PP

>> Lactamase_B  Metallo-beta-lactamase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.2   5.4e-10   2.4e-06      19     162 ..      24     149 ..       5     186 .. 0.75

  Alignments for each domain:
  == domain 1  score: 27.7 bits;  conditional E-value: 5.4e-10
                  EES--SCHHHHHHHHHHHHHTSGGGGEEEEE-SBSSHHHHTTGGGCTTHHCCEETCCEHHHHCCHCHHHHHHHHHCCHHTTCHCGCCEEEEETTTEEC CS
  Lactamase_B  19 LiDtGtsteaaraalelaalglkpkdvdavilTHlHlDHiGglgglveatdvpvgavaeeapalfmeeaddaasrkglllagvsadkpdvdeeeldgn 116
                  LiD+  s e    +        +   ++a+++TH+H+DH  g++  +++ +        +  a+ +  +d                   + +e l+ +
   CCD25394.1  24 LIDPAESDEVIPNL-----TSSERQSIKAIVNTHHHYDHSDGNMSMINELKQEGKRFVVKIVAGSKSSPDAT-----------------ELPEHLQHY 99 
                  78888888888887.....7999999*******************************************554.................555555555 PP

                  CCTEEEEE..HECTTSTSCCEEEEEE..TTCCEEEECTTTSSHHCCCCCC CS
  Lactamase_B 117 aggrraly..vtggpghghghgvvey..gggkvlftGDallagetgridl 162
                   +g ++     t++++  +++++v +   +++ +ftGD+l++g  gr+ +
   CCD25394.1 100 KLGNLDITciRTPCHTVDSICYHVKDpeTNEQCIFTGDTLFIGGCGRFFE 149
                  555555550055556666666666663345899**********9998766 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   3.9e-07    0.0017      26      58 ..      40      77 ..      23     149 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3.9e-07
                   --..SEEEEE-SS--HHHHGGGGCCCC.C--EE....E CS
  Lactamase_B_2 26 delppidaVllthaHyDHlaglltlre.lrpkk....l 58
                   +e ++i+a++ th HyDH  g +++   l+++     +
     CCD25394.1 40 SERQSIKAIVNTHHHYDHSDGNMSMINeLKQEGkrfvV 77
                   33458**************6655555434333213333 PP

>> Gp-FAR-1  Nematode fatty acid retinoid binding protein (Gp-FAR-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00043       1.9       8      48 ..      27      70 ..      24      71 .. 0.80
   2 ?    3.4   0.0     0.019        87      68      88 ..      65      85 ..      62      91 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00043
    Gp-FAR-1  8 Psevvealknltdeekaqlkevvknykgykned...ellaalKk 48
                P+e  e++ nlt+ e++ +k +v+ ++ y   d    ++++lK+
  CCD25394.1 27 PAESDEVIPNLTSSERQSIKAIVNTHHHYDHSDgnmSMINELKQ 70
                8888999******************9886655522257777775 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.019
    Gp-FAR-1 68 vdkLspeakeFvkkliakgrk 88
                +++L++e+k Fv k++a  ++
  CCD25394.1 65 INELKQEGKRFVVKIVAGSKS 85
                899***********9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       701  (0.0390987); expected 358.6 (0.02)
Passed bias filter:                      566  (0.031569); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.29s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 1846.25
//
Query:       CCD25395.1  [L=252]
Description: hypothetical protein NDAI_0F00760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.5e-73  244.7   0.1    6.6e-73  244.4   0.1    1.1  1  CK_II_beta  Casein kinase II regulatory subunit
  ------ inclusion threshold ------
       0.15   12.8   1.0       0.35   11.6   0.3    1.9  2  RecG_N      RecG N-terminal helical domain


Domain annotation for each model (and alignments):
>> CK_II_beta  Casein kinase II regulatory subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.4   0.1   7.4e-77   6.6e-73       2     181 ..      32     214 ..      31     215 .. 0.96

  Alignments for each domain:
  == domain 1  score: 244.4 bits;  conditional E-value: 7.4e-77
  CK_II_beta   2 WiswflslkgneyfvevdedfiedkfnltgLseevpnykealelildv...eeeeeleeseksevessaelLYgliHaryiltkkglakmlekykkkef 97 
                 Wi+ fl +kgneyf+++d ++i+d+fnl++L+++v+++++++++i+d    +  e++++s+ +++es+a+++YgliHaryi+t kgl+kml+kyk+++f
  CCD25395.1  32 WIDVFLGRKGNEYFCDIDPEYITDRFNLINLQKSVSKFSQVVQYIVDDldeNVLESMSHSRLEQLESDARKFYGLIHARYIITIKGLQKMLDKYKDADF 130
                 **********************************************994333345677888999*********************************** PP

  CK_II_beta  98 grCprvlCekqkvLPvGlsdkpgektvklyCpkCedvYspkssrsrsidGafFGttfphlllltypelepkkskekyepriyGf 181
                 grCprv+C+ q++LPvGl+d+pg + vklyCp+Ced+Y pkssr++sidGafFGt+fp ++l+ yp++ pk+++++y+p+i+Gf
  CCD25395.1 131 GRCPRVYCNYQPLLPVGLHDQPGIDCVKLYCPSCEDLYVPKSSRHSSIDGAFFGTSFPGMFLQAYPDMVPKHPTKRYVPKIFGF 214
                 ************************************************************************************ PP

>> RecG_N  RecG N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3     4e-05      0.35      20      86 ..      63     127 ..      48     129 .. 0.85
   2 ?   -2.0   0.0      0.69   6.2e+03      31      52 ..     217     237 ..     192     242 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4e-05
                 TT........HHHHHHH---GGGG-HHHH.HHHHHHHHHHTTSSSS-HHHHHHHHHHHHHHHHHHHH CS
      RecG_N  20 kleteelieeikkkleliddplleneevlkeklskfldYikpiasLpeeRkikRlknglemieklrd 86 
                 ++++++  + ++  ++ +d+++le  + +  +l+++ + + +   L ++R i  +k + +m +k++d
  CCD25395.1  63 QKSVSKFSQVVQYIVDDLDENVLESMSHS--RLEQLESDARKFYGLIHARYIITIKGLQKMLDKYKD 127
                 44455566666666779999***998888..**********************************98 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.69
                 HHHHHH---GGGG-HHHH.HHH CS
      RecG_N  31 kkkleliddplleneevlkekl 52 
                 +k+++l   ++l+  ++  e+l
  CCD25395.1 217 HKQAQLARWQELQRLKLV-ERL 237
                 444444444444444444.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 1996.59
//
Query:       CCD25396.1  [L=959]
Description: hypothetical protein NDAI_0F00770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-82  276.9   0.2    1.5e-81  273.3   0.1    2.7  2  Hira      TUP1-like enhancer of split
  ------ inclusion threshold ------
      0.013   16.4   0.3         14    6.8   0.0    4.4  4  WD40      WD domain, G-beta repeat
          5    7.8   9.9       0.23   12.2   3.4    2.1  2  Pet20     Mitochondrial protein Pet20


Domain annotation for each model (and alignments):
>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.11   6.6e+02      29      51 ..     320     342 ..     290     366 .. 0.84
   2 !  273.3   0.1   2.6e-85   1.5e-81       1     221 [.     666     910 ..     666     911 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.11
        Hira  29 svgllyvWnvkkkkvllppvsla 51 
                 ++g+++vWn+ ++k l++  +++
  CCD25396.1 320 KDGSIMVWNTGRMKPLFNAIQIS 342
                 5799*********9999877665 PP

  == domain 2  score: 273.3 bits;  conditional E-value: 2.6e-85
        Hira   1 GrrllPplvlespasfLessgsyLlavtsvgllyvWnvkkkkvllppvslapllssssrssekeltrapavtsasltsnGvpivtlsngdgylydkslk 99 
                 Gr +lPpl+l+ p+sfLe+ gsyLl++ts g+ly+W+++++k+++p +s++p+l++s+r+s++ ltra++vt++s+t++Gvpivtlsng+g+++d++++
  CCD25396.1 666 GRTILPPLILGVPISFLEAMGSYLLCLTSLGELYCWDLENRKLKFPMNSIYPILNPSQRYSDDILTRAENVTMCSITRKGVPIVTLSNGNGFIFDEEMG 764
                 9************************************************************************************************** PP

        Hira 100 tWlrvsdswwalgsqywdsrdsstsssassas........................gilsalerktneevlrkgrakllqrlaktllekegfenleesv 174
                 +W++vsdswwa+gsqyw+s++s++ +++ +++                        + +++le ktn+e++rk+++kllq+++k +l+kegfen+ee+v
  CCD25396.1 765 VWCLVSDSWWAFGSQYWNSLSSDNYTNENDKDgksknerqgnssdemmqviinekgSLINFLETKTNDELNRKNKIKLLQKFSKVVLMKEGFENMEEVV 863
                 **********************99998877779****************************************************************** PP

        Hira 175 tlahlEnrlaaallLgsadEfkkwllaYakrLaeeglesrlrelcke 221
                 tl+hlEn+l+++l+L++++Ef++++++Y+ +L+e g+ +rl++++++
  CCD25396.1 864 TLSHLENKLLVSLKLKENSEFNQLITLYCIKLSELGYLGRLDDILQW 910
                 *********************************************98 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.044   2.6e+02      10      38 .]      14      40 ..       6      40 .. 0.79
   2 ?   -0.2   0.0      0.36   2.1e+03       9      38 .]     127     169 ..     120     169 .. 0.69
   3 ?    6.8   0.0    0.0023        14      23      38 .]     312     328 ..     303     328 .. 0.80
   4 ?   -0.5   0.0      0.45   2.7e+03      12      33 ..     345     366 ..     340     368 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.044
                S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40 10 H.ssvtslafspdgawlasGsdDgtvriWd 38
                H +s t++  ++d+++++ ++d g+v +W+
  CCD25396.1 14 HlTSLTAV--DKDNKLII-ADDTGHVIVWS 40
                65566666..9*****98.799*******5 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.36
                 SSSS..........EEEEEEETTSSEEEEE..E.TTSEEEEEE CS
        WD40   9 GHss..........vtslafspdgawlasG..s.dDgtvriWd 38 
                 +H++          +t+++ ++ ++ l+++  s +D+++ ++d
  CCD25396.1 127 THNHgmemrsnimtITDVKLDSVKNILLASlvSlKDNKILLFD 169
                 5544566666667799999888888888665445799999987 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0023
                 SEEEEE.ETTSEEEEEE CS
        WD40  23 awlasG.sdDgtvriWd 38 
                 ++la++  +Dg++++W+
  CCD25396.1 312 NLLATSaNKDGSIMVWN 328
                 568876258*******8 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.45
                 SEEEEEEETTSSEEEEEETTSE CS
        WD40  12 svtslafspdgawlasGsdDgt 33 
                 +++++ +s+dg  l++ s Dg 
  CCD25396.1 345 PINDMEWSKDGYSLFAISNDGI 366
                 599********99873255776 PP

>> Pet20  Mitochondrial protein Pet20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.4   3.8e-05      0.23      48     125 ..     443     514 ..     407     517 .. 0.52
   2 ?   -3.1   0.5       2.1   1.3e+04      61      71 ..     809     819 ..     785     859 .. 0.46

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.8e-05
       Pet20  48 eeklneqevleeeekeieelakesgtggiksggvngtwkkkpviPskllpy.wsasisgmeyndefkkvPkkvvkklkP 125
                  ++++ +++++ ++k++++ + +s t       +n++   + + P  ++p    + +  me+n+   +vPk++ +klkP
  CCD25396.1 443 LTTEKGNKKKNAKRKSVSSTSSSSTTTK-----INSNNTANNKEP--MKPDiKITKSNNMEFNPPSYNVPKDLKRKLKP 514
                 1111111111122222222233333333.....333333344444..555524456779******99***********9 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.1
       Pet20  61 ekeieelakes 71 
                 ++ ++ + +e+
  CCD25396.1 809 DEMMQVIINEK 819
                 22233333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (959 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1517  (0.0846115); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.24s 00:00:00.99 Elapsed: 00:00:00.41
# Mc/sec: 6993.98
//
Query:       CCD25397.1  [L=297]
Description: hypothetical protein NDAI_0F00780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-06   26.8   0.0    0.00013   22.2   0.0    2.6  2  FAD_binding_6  Oxidoreductase FAD-binding domain


Domain annotation for each model (and alignments):
>> FAD_binding_6  Oxidoreductase FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.018   3.2e+02      24      56 ..      81     113 ..      56     124 .. 0.75
   2 !   22.2   0.0   7.4e-09   0.00013      57      94 ..     140     177 ..     133     181 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.018
                    TTS-----TT-EEEEEECETTCCEEEEEE.BSS CS
  FAD_binding_6  24 ekqklglpvGqhvflrlkikgeaviRsYtpiss 56 
                    ++++ +   G+   +++k ++  ++R Ytp+  
     CCD25397.1  81 KNNVWDQTRGKIWSIQIKQPEIMIVRDYTPLPL 113
                    55555566788888899999999******9755 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 7.4e-09
                    TTECCEEEEEEE--TT-HHHHHHHCS-TT-EEEEEEEE CS
  FAD_binding_6  57 enekGelellvkvypgGkmsqaLdelkigdtleikGPl 94 
                    ++ +  + l +k+y++G++s  L++l++++++ei+GP+
     CCD25397.1 140 SSVSDDILLYIKKYNDGEVSRWLSNLPLNHKIEIRGPI 177
                    556667889****************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       480  (0.0267723); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2264.91
//
Query:       CCD25398.1  [L=315]
Description: hypothetical protein NDAI_0F00790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-21   74.1  13.0    9.3e-21   74.1  13.0    2.7  2  Syntaxin_2     Syntaxin-like protein
    4.3e-14   52.2   0.1    1.1e-13   51.0   0.1    1.6  1  SNARE          SNARE domain
    3.2e-05   23.7  20.6    0.00015   21.5  20.6    1.9  1  Syntaxin       Syntaxin
  ------ inclusion threshold ------
      0.013   15.9   1.3        1.4    9.4   0.0    3.1  3  MtrB           Tetrahydromethanopterin S-methyltransferase su
      0.019   15.0   0.5      0.019   15.0   0.5    3.1  3  Spectrin_like  Spectrin like domain
      0.039   14.4   1.3      0.039   14.4   1.3    2.4  3  T3SSipB        Type III cell invasion protein SipB
       0.14   12.5  12.1       0.22   11.9   2.5    3.6  3  V-SNARE        Vesicle transport v-SNARE protein N-terminus
       0.28   11.0   0.1       0.28   11.0   0.1    3.3  4  betaPIX_CC     betaPIX coiled coil
       0.41   10.7  16.7        0.7    9.9   2.4    3.0  3  DUF1664        Protein of unknown function (DUF1664)
        1.1    9.1   8.9      0.092   12.6   2.5    2.5  3  Synaptobrevin  Synaptobrevin
        1.2    8.9   9.8        1.3    8.8   1.3    2.4  2  MCPsignal      Methyl-accepting chemotaxis protein (MCP) sign
        1.3    9.8   7.9         14    6.5   0.2    2.9  2  DUF4162        Domain of unknown function (DUF4162)
        3.9    7.1  18.1       0.83    9.3   2.3    3.5  4  DUF4988        Domain of unknown function
        5.5    7.2  20.8         14    5.8  13.1    3.4  3  CEP209_CC5     Coiled-coil region of centrosome protein CE290


Domain annotation for each model (and alignments):
>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.1  13.0   7.3e-24   9.3e-21       1     101 []      53     161 ..      53     161 .. 0.95
   2 ?    4.0   5.0     0.049        63       4      58 ..     231     286 ..     196     293 .. 0.65

  Alignments for each domain:
  == domain 1  score: 74.1 bits;  conditional E-value: 7.3e-24
  Syntaxin_2   1 issnlqkinsnvstleklvkqLgtkkdteelr........eklhelieeinelikktnellkklsqldnsssdsqqklqkekLkkdfkealqeFqkiqr 91 
                 i+++l++in+++stl+++ ++L+++ d  ++r        +k++ +i++i el+k++ne++ k+++l+ +++++ q +++ekL +dfk++lqeFq+iq 
  CCD25398.1  53 IAAQLFEINGQISTLQQFSQSLQKSLDDNKVRtkivenviKKANLNIHKIGELVKACNEDVTKIDSLEVTTLNKLQLISREKLLRDFKSSLQEFQSIQS 151
                 789**********************998888877777777999******************************************************** PP

  Syntaxin_2  92 qyaekekqiv 101
                 +y++  kqi+
  CCD25398.1 152 NYTKLIKQIN 161
                 *******985 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.049
  Syntaxin_2   4 nlqkinsnvstleklvkqLgtkkdteelr.eklhelieeinelikktnellkklsq 58 
                 ++++i + +++l++ +k+L++  +++ l  ++++++i + ++  +  +++l+k  +
  CCD25398.1 231 EITNIEQDITELNEIFKDLSNVVQQQGLMvDNIESNIYSFSDNTQMASQQLNKARK 286
                 45666666666666666666664444443355666666665555555555555555 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.1   8.2e-17   1.1e-13       2      53 .]     259     310 ..     259     310 .. 0.98

  Alignments for each domain:
  == domain 1  score: 51.0 bits;  conditional E-value: 8.2e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   2 mvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                 mvD+I++n+++ ++n++ a ++L+ka+kyq+   k++ ++l+ l i l+++l
  CCD25398.1 259 MVDNIESNIYSFSDNTQMASQQLNKARKYQRHGTKWCLYLLIALSIMLVFLL 310
                 9************************************************986 PP

>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5  20.6   1.2e-07   0.00015      10     200 .]      52     257 ..      45     257 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.2e-07
    Syntaxin  10 eikkeiekleeevkklkkqneesktstraksvklkkrmesdikeikkraesvkarLeaLdksnkenekks..gegsavdRirksqtaaLrkklkevmte 106
                 +i  ++ +++ +++ l++  +++ +s + ++v  +    ++++++ k+a+   +++ +L k+++e+ +k    e ++ +  +    + L + +k+ ++e
  CCD25398.1  52 SIAAQLFEINGQISTLQQFSQSLQKSLDDNKV--R---TKIVENVIKKANLNIHKIGELVKACNEDVTKIdsLEVTTLNKLQLISREKLLRDFKSSLQE 145
                 57778889999999999999999999999999..3...458888888898888899999999888887765567788899999999************* PP

    Syntaxin 107 ynelrekireeykerieRr.levtGkevseeeieelietge....sevflqkllqeqrgarealsei...................eeRhkevleleks 181
                 +++++++ ++  k+  e+  l+  G+  s+ +   l++++e     ++  q+ll +q       + i                   e+R++e+ ++e+ 
  CCD25398.1 146 FQSIQSNYTKLIKQINEKTkLQLYGNLHSDANETALLQEQEehtqPQIHEQQLLPKQ------KNRIvierepinneeftyqqnliEQRNREITNIEQD 238
                 *************9999999******9999998888887762332333344444444......33333444445777888888888************* PP

    Syntaxin 182 lkeLhqlFldmavLVEeQG 200
                 + eL+++F d++ +V++QG
  CCD25398.1 239 ITELNEIFKDLSNVVQQQG 257
                 ******************9 PP

>> MtrB  Tetrahydromethanopterin S-methyltransferase subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0011       1.4      20      56 ..      46      82 ..      39      90 .. 0.88
   2 ?   -0.4   0.0       1.2   1.6e+03       4      44 ..      91     130 ..      87     155 .. 0.69
   3 ?    3.4   0.1     0.082     1e+02      30      55 ..     231     256 ..     219     266 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
        MtrB 20 aearedvvllsldpvleeidkLekiaddlvnsLdpet 56
                 e+ +d +  +l +++ +i  L++ ++ l +sLd ++
  CCD25398.1 46 FESLKDSIAAQLFEINGQISTLQQFSQSLQKSLDDNK 82
                5677999**************************9876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.2
        MtrB   4 vlpelnlvldpetgvvaearedvvllsldpvleeidkLeki 44 
                 v+  +nl++     +v + +edv  ++  +v+  ++kL+ i
  CCD25398.1  91 VIKKANLNIHKIGELVKACNEDVTKIDSLEVT-TLNKLQLI 130
                 56667777777777888888888888877775.35555544 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.082
        MtrB  30 sldpvleeidkLekiaddlvnsLdpe 55 
                 +++++++ i++L++i +dl n ++ +
  CCD25398.1 231 EITNIEQDITELNEIFKDLSNVVQQQ 256
                 567899**************987765 PP

>> Spectrin_like  Spectrin like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       5.7   7.3e+03      44      67 ..      49      72 ..      47      78 .. 0.58
   2 ?   15.0   0.5   1.5e-05     0.019       6      45 ..     109     148 ..     107     169 .. 0.91
   3 ?    3.0   0.4     0.087   1.1e+02      28      72 ..     241     287 ..     224     290 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 5.7
  Spectrin_like 44 lrdSqeSelFteedrkqlerevek 67
                   l+dS  ++lF+ + + +  +++++
     CCD25398.1 49 LKDSIAAQLFEINGQISTLQQFSQ 72
                   566666777766555554444444 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.5e-05
  Spectrin_like   6 llkDiekirsltlamlktmkpeeyrqvlknLelhyqdFlr 45 
                    + +D++ki sl +++l++++   ++++l++ ++ +q+F++
     CCD25398.1 109 CNEDVTKIDSLEVTTLNKLQLISREKLLRDFKSSLQEFQS 148
                    889***********************************85 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.087
  Spectrin_like  28 eyrqvlknLel..hyqdFlrdSqeSelFteedrkqlere.vekaqehy 72 
                    e +++ k+L    + q  + d  eS++++ +d++q+ ++  +ka++ y
     CCD25398.1 241 ELNEIFKDLSNvvQQQGLMVDNIESNIYSFSDNTQMASQqLNKARK-Y 287
                    66666666665113456799999**********9997651455544.4 PP

>> T3SSipB  Type III cell invasion protein SipB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   1.3     3e-05     0.039      22     123 ..      48     149 ..      41     166 .. 0.86
   2 ?    0.6   0.2      0.55   7.1e+02      58     105 ..     135     184 ..     125     204 .. 0.61
   3 ?   -0.8   0.2       1.5   1.9e+03      81      81 ..     258     258 ..     215     290 .. 0.45

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3e-05
                 HHHHHHHHHHHHHHHTTTTT----STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------CHHHHHHHHH..HHHHHHH CS
     T3SSipB  22 qLenrlaawkamskaqqeaasklSdelqtalseakgatddleaaiekadqaksaadaatkkvdeaqkrlkeLaPdePekakleaaeqQagaaadalqad 120
                  L++ +aa    +++q   ++++S+ lq+ l++ k  t+ +e+ i+ka+    ++ ++ k+ +e  +++++L+    +k +l   e+ + + + +lq  
  CCD25398.1  48 SLKDSIAAQLFEINGQISTLQQFSQSLQKSLDDNKVRTKIVENVIKKANLNIHKIGELVKACNEDVTKIDSLEVTTLNKLQLISREKLLRDFKSSLQEF 146
                 68888888888999**********************************************************888888888877777777667776666 PP

                 HHH CS
     T3SSipB 121 eal 123
                 + +
  CCD25398.1 147 QSI 149
                 555 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.55
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHTT---------CHHH CS
     T3SSipB  58 atddleaaiekadqaksaadaatkkvdeaqk..rlkeLaPdePekaklea 105
                 + +d++ + ++ ++++s++ ++ k+++e  k     +L  d  e a l++
  CCD25398.1 135 LLRDFKSSLQEFQSIQSNYTKLIKQINEKTKlqLYGNLHSDANETALLQE 184
                 45666777777777777777777777765443211245555555554444 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.5
                 H CS
     T3SSipB  81 k 81 
                  
  CCD25398.1 258 L 258
                 1 PP

>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.1     0.041        52      13      38 ..     122     147 ..      59     155 .. 0.61
   2 ?    4.8   0.5     0.029        37      14      42 ..     123     151 ..     109     184 .. 0.79
   3 ?   11.9   2.5   0.00017      0.22      19      50 ..     223     255 ..     218     289 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.041
     V-SNARE  13 arlsslageerkaalreiekkldeae 38 
                 ++l++l+  +r ++lr+++++l+e++
  CCD25398.1 122 TTLNKLQLISREKLLRDFKSSLQEFQ 147
                 23333333455555555555555555 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.029
     V-SNARE  14 rlsslageerkaalreiekkldeaeelld 42 
                 +l++l+  +r ++lr+++++l+e++++ +
  CCD25398.1 123 TLNKLQLISREKLLRDFKSSLQEFQSIQS 151
                 55666557999999999999999998755 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 0.00017
     V-SNARE  19 ag.eerkaalreiekkldeaeelldqMelEvrn 50 
                 +  e+r++ + +ie+++ e++e+++ ++  v++
  CCD25398.1 223 NLiEQRNREITNIEQDITELNEIFKDLSNVVQQ 255
                 3459*********************99988875 PP

>> betaPIX_CC  betaPIX coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00022      0.28      32      77 ..      52      97 ..      36     104 .. 0.86
   2 ?    0.3   0.5       0.5   6.4e+02      25      62 ..     128     164 ..     114     167 .. 0.67
   3 ?   -1.3   0.3       1.5     2e+03       9      29 ..     206     226 ..     192     254 .. 0.61
   4 ?   -0.8   0.2       1.1   1.4e+03      19      53 ..     243     283 ..     226     288 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00022
  betaPIX_CC 32 slVDtVYaLkdevqelkqenkklkksleeEqkaRkdLEkvvrkllk 77
                s+    + +  ++++l+q  ++l+ksl++ +   k +E+v++k   
  CCD25398.1 52 SIAAQLFEINGQISTLQQFSQSLQKSLDDNKVRTKIVENVIKKANL 97
                55556788999******************99999999****99765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.5
  betaPIX_CC  25 qtvleekslVDtVYaLkdevqelkqenkklkksleeEq 62 
                 q + +ek l D   +L+ e q ++ ++ kl k+++e  
  CCD25398.1 128 QLISREKLLRDFKSSLQ-EFQSIQSNYTKLIKQINEKT 164
                 66777777777766664.56777777777777776654 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.5
  betaPIX_CC   9 ivpeeekiiveelksnqtvle 29 
                 iv e e i  ee + +q ++e
  CCD25398.1 206 IVIEREPINNEEFTYQQNLIE 226
                 444444455555444444444 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 1.1
  betaPIX_CC  19 eelksn.qtvleeksl.VDt....VYaLkdevqelkqenkk 53 
                 +e+ ++ + v++++ l VD     +Y+  d+ q+  q++ k
  CCD25398.1 243 NEIFKDlSNVVQQQGLmVDNiesnIYSFSDNTQMASQQLNK 283
                 45555554444444332564222257777766666665555 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   2.8    0.0018       2.3      55     115 ..      58     118 ..      43     134 .. 0.78
   2 ?   -0.1   0.2      0.68   8.7e+02      73      95 ..     141     163 ..     117     197 .. 0.64
   3 ?    9.9   2.4   0.00054       0.7      75     123 ..     218     266 ..     196     267 .. 0.89

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0018
     DUF1664  55 eslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegles 115
                  +++ +   L++  ++++k+ld++k  +k +++ +++++ ++++ige v++ +e v++++s
  CCD25398.1  58 FEINGQISTLQQFSQSLQKSLDDNKVRTKIVENVIKKANLNIHKIGELVKACNEDVTKIDS 118
                 4556666677778888999999999999999999999999999999999999999988875 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.68
     DUF1664  73 kkldeqkeiskeikeevtevred 95 
                 ++l+e + i+++ ++ +++++e+
  CCD25398.1 141 SSLQEFQSIQSNYTKLIKQINEK 163
                 33344444444444444443333 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00054
     DUF1664  75 ldeqkeiskeikeevtevredlseigedvesvkeaveglesklerieek 123
                    q++++++ ++e+t++++d++e++e ++ ++++v++ +  +++ie++
  CCD25398.1 218 FTYQQNLIEQRNREITNIEQDITELNEIFKDLSNVVQQQGLMVDNIESN 266
                 566889999*******************************999999986 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3       1.6     2e+03      30      46 ..      61      77 ..      54      99 .. 0.70
   2 ?   -2.2   0.2       2.8   3.6e+03      12      26 ..      88     102 ..      71     123 .. 0.63
   3 ?   12.6   2.5   7.2e-05     0.092       2      83 ..     229     314 ..     228     315 .] 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.6
                   CCCHHHHCCCCHHHHHH CS
  Synaptobrevin 30 gekldeLvdktenLqss 46
                   + ++++L++ ++ Lq+s
     CCD25398.1 61 NGQISTLQQFSQSLQKS 77
                   55677777777777765 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.8
                    HHCCCCHHCCHHHHC CS
  Synaptobrevin  12 vdevkdimkeNidkv 26 
                    v++v ++ + Ni+k+
     CCD25398.1  88 VENVIKKANLNIHKI 102
                    344444444444444 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 7.2e-05
                    XXHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCC....CHHHHHHHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   2 ndklakikaevdevkdimkeNidkvlergekldeLvdk....tenLqssaqqFkkqarklkrkmwwknmkliiililvvlililii 83 
                    n+++++i++++ e  +i k+  + v + g  +d++++     ++n q+ +qq +k  + +++   w  + li++ i++v++l++++
     CCD25398.1 229 NREITNIEQDITELNEIFKDLSNVVQQQGLMVDNIESNiysfSDNTQMASQQLNKARKYQRHGTKWCLYLLIALSIMLVFLLLIVF 314
                    7899*************************999999876666699999999999999999999999988877666666666666665 PP

>> MCPsignal  Methyl-accepting chemotaxis protein (MCP) signalling domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.8     0.019        24      86     163 ..      83     162 ..      49     167 .. 0.55
   2 ?    8.8   1.3     0.001       1.3     116     168 ..     218     270 ..     176     276 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.019
                 HHHHHHHHHH..............HHHHHHHHHHHHHHHHHCCHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal  86 qaakeiealiieiqkeindsvesleetrqrveegselveetgealkeivea..vaevadlvqeiaaaseeqsasieevnq 163
                  ++k +e++i++ + +i++  e ++  ++ v +  +l  +t ++l+ i+ +    + ++++qe ++  ++ ++ i+++n+
  CCD25398.1  83 VRTKIVENVIKKANLNIHKIGELVKACNEDVTKIDSLEVTTLNKLQLISREklLRDFKSSLQEFQSIQSNYTKLIKQINE 162
                 33344444444444444444444444444444444444456666666664322456666666666666666666666665 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.001
                 HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   MCPsignal 116 veegselveetgealkeiveavaevadlvqeiaaaseeqsasieevnqaveev 168
                      +l+e+ ++++ +i + ++e++++ ++++  +++q   ++++ +++   
  CCD25398.1 218 FTYQQNLIEQRNREITNIEQDITELNEIFKDLSNVVQQQGLMVDNIESNIYSF 270
                 55567889999***********************************9998665 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2     0.011        14      17      68 ..      49     104 ..      33     111 .. 0.77
   2 ?    5.3   2.8     0.025        32      58      78 ..     227     247 ..     132     250 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.011
                 EE--.-----..--.-EEEE-TTS-EEEEE-------------.-.---EEEEEEE CS
     DUF4162  17 vead.aeelleepg.veeveeeggelelkledeeaanellkal.t.sgveirsFee 68 
                 +++  a++l+e++g +++++++ ++l+  l+d++++ ++ + + + ++++i+++ e
  CCD25398.1  49 LKDSiAAQLFEINGqISTLQQFSQSLQKSLDDNKVRTKIVENViKkANLNIHKIGE 104
                 44224788999999999999999999999999999999999996457777877665 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.025
                 ----EEEEEEEE---HHHHHH CS
     DUF4162  58 tsgveirsFeeeePsLndIFi 78 
                 +++ ei+++e+ +  Ln+IF 
  CCD25398.1 227 QRNREITNIEQDITELNEIFK 247
                 35778***************7 PP

>> DUF4988  Domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.8   2.3e+03      14      33 ..      52      71 ..      46      73 .. 0.76
   2 ?    6.5   1.9    0.0048       6.1       1      44 [.      74     118 ..      74     129 .. 0.85
   3 ?   -0.0   0.3      0.47     6e+02      17      75 ..     134     193 ..     120     197 .. 0.68
   4 ?    9.3   2.3   0.00065      0.83       5      64 ..     225     280 ..     221     287 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.8
     DUF4988 14 aleeqvkelndniealkkll 33
                ++ +q+ e+n +i++l++  
  CCD25398.1 52 SIAAQLFEINGQISTLQQFS 71
                45679999999999999865 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0048
     DUF4988   1 leddvndlkdrvaaleeqvkelndniealkkll.eegkvitevee 44 
                 l++ ++d k r + +e+ +k+ n ni+++++l+   ++ +t++++
  CCD25398.1  74 LQKSLDDNKVRTKIVENVIKKANLNIHKIGELVkACNEDVTKIDS 118
                 678899999************************656777888775 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.47
     DUF4988  17 eqvkelndniealkkll.eegkviteveensdg.syvltlsdgktitltqgkdgeakaPvi 75 
                 + +++ +++++  + +  +  k+i +++e+++   y    sd ++  l q+++ e + P i
  CCD25398.1 134 KLLRDFKSSLQEFQSIQsNYTKLIKQINEKTKLqLYGNLHSDANETALLQEQE-EHTQPQI 193
                 55566677777777777667888999988877633444456777666666666.6666655 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00065
     DUF4988   5 vndlkdrvaaleeqvkelndniealkkll.eegkviteveensdgsyvltlsdgktitltq 64 
                 +++ + +++ +e+ + eln+ ++ l++++ ++g ++ ++e+n        +sd++++  +q
  CCD25398.1 225 IEQRNREITNIEQDITELNEIFKDLSNVVqQQGLMVDNIESNI-----YSFSDNTQMASQQ 280
                 5666778**********************88999999999943.....3477777776555 PP

>> CEP209_CC5  Coiled-coil region of centrosome protein CE290
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.4     0.029        37      47     103 ..      49     104 ..      35     122 .. 0.80
   2 ?    5.8  13.1     0.011        14      65     116 ..     195     250 ..     122     260 .. 0.74
   3 ?    1.0   0.1      0.34   4.3e+02      82     109 ..     244     271 ..     241     288 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.029
  CEP209_CC5  47 lkdakgaqkvleWhkkieelrlqelklkreltkqkeeikylknlieeqertisklEe 103
                 lkd+  a++++e   +i +l+   + l++ l  +k + k  +n+i++ +  i+k+ e
  CCD25398.1  49 LKDS-IAAQLFEINGQISTLQQFSQSLQKSLDDNKVRTKIVENVIKKANLNIHKIGE 104
                 5554.4566788888888888888999999999999999999999999999998865 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.011
  CEP209_CC5  65 elrlqelklkreltk....qkeeikylknlieeqertisklEeeivqlnkvheerq 116
                 e +l   +++r + +    ++ee  y++nlie+++r i+++E++i++ln+  ++  
  CCD25398.1 195 EQQLLPKQKNRIVIErepiNNEEFTYQQNLIEQRNREITNIEQDITELNEIFKDLS 250
                 5555444555544442222589***************************9988755 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.34
  CEP209_CC5  82 eeikylknlieeqertisklEeeivqln 109
                 e  k l n++++q   ++++E +i   +
  CCD25398.1 244 EIFKDLSNVVQQQGLMVDNIESNIYSFS 271
                 6678899**************9986543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2758  (0.153829); expected 358.6 (0.02)
Passed bias filter:                      670  (0.0373696); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 2149.78
//
Query:       CCD25399.1  [L=155]
Description: hypothetical protein NDAI_0F00800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   13.1   3.3       0.12   12.2   3.3    1.5  1  zf-CCHC_2  Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.3     7e-06      0.12       3      15 ..     124     136 ..     123     140 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7e-06
   zf-CCHC_2   3 gYvChiCgkkGHy 15 
                  Y C iC+k GH 
  CCD25399.1 124 PYRCTICKKRGHL 136
                 5***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1099  (0.0612973); expected 358.6 (0.02)
Passed bias filter:                      739  (0.0412181); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1203.44
//
Query:       CCD25400.1  [L=437]
Description: hypothetical protein NDAI_0F00810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.032   12.7   1.2        1.9    6.8   0.1    2.2  2  Sec10          Exocyst complex component Sec10
       0.17   12.4   0.5       0.38   11.2   0.4    1.9  1  OHCU_decarbox  OHCU decarboxylase
        1.3    9.6  17.5        2.2    8.9   3.3    3.8  3  zf-C2H2        Zinc finger, C2H2 type


Domain annotation for each model (and alignments):
>> Sec10  Exocyst complex component Sec10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1    0.0013       7.7     151     202 ..      55     105 ..      48     107 .. 0.90
   2 ?    6.8   0.1   0.00033       1.9      36      71 ..     234     275 ..     181     302 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0013
       Sec10 151 fvnqhdffidkdkldeangiesseiweklad.pdeapskveeslqalfseire 202
                 f  +h++f+++d+l     +++s+ + ++ d  d++++k ++++++lf+++++
  CCD25400.1  55 FCSHHPMFYSNDEL--MFHLRNSHEKCHICDrIDHNNPKFFKNYDQLFKHFKD 105
                 889**********9..66777888999**********************9986 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.00033
       Sec10  36 rqraseaaeLiefykeflssge......tsklellfkkskdp 71 
                  ++++ +++Li++yke+++s++      +++l +lf+  +++
  CCD25400.1 234 TKNKLTTSQLIQCYKELFTSPQsniyllIHNLGELFPPHSTK 275
                 456899999*************88888877777776666555 PP

>> OHCU_decarbox  OHCU decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   6.3e-05      0.38      70     105 ..     200     235 ..      66     237 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.3e-05
                    HTHCHHHHHHHCCCTTTTCHHHHHHHHHHHHHHHHH CS
  OHCU_decarbox  70 kkklsalsrkEqaglglaaseeeleeLaelnaeYee 105
                    + + ++l   E+a+l l++s+ee+ee+a+ln++Y +
     CCD25400.1 200 SPEIKRLRLDERAKLYLNNSPEEFEEFARLNENYTK 235
                    44556666778888888*****************87 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   3.8      0.14   8.1e+02       3      23 .]      53      76 ..      52      76 .. 0.94
   2 ?    8.9   3.3   0.00038       2.2       2      23 .]      78     107 ..      78     107 .. 0.94
   3 ?    5.8   0.0    0.0035        21       9      23 .]     122     137 ..     108     137 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.14
                ETTTT..EEESSHHHHHHHHHC.C CS
     zf-C2H2  3 CpdCg..ksFkrksnLkrHirt.H 23
                C+ C+   +F ++++L+ H+r  H
  CCD25400.1 53 CKFCShhPMFYSNDELMFHLRNsH 76
                9999999*************9988 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00038
                 EETTTT.......EEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCpdCg.......ksFkrksnLkrHirt.H 23 
                 kC++C+       k Fk+ ++L +H +  H
  CCD25400.1  78 KCHICDridhnnpKFFKNYDQLFKHFKDsH 107
                 7************************98777 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0035
                 EESSHHHHHHHHHC.C CS
     zf-C2H2   9 sFkrksnLkrHirt.H 23 
                 +Fk++ +L++H+ + H
  CCD25400.1 122 VFKDNVELEAHLLKeH 137
                 8***********9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       685  (0.0382063); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3481.53
//
Query:       CCD25401.1  [L=832]
Description: hypothetical protein NDAI_0F00820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-23   83.6   0.1    2.1e-22   79.7   0.0    3.1  3  UNC45-central  Myosin-binding striated muscle assembly centra
  ------ inclusion threshold ------
        6.4    7.4  10.7      0.062   13.9   1.0    2.6  3  ING            Inhibitor of growth proteins N-terminal histon


Domain annotation for each model (and alignments):
>> UNC45-central  Myosin-binding striated muscle assembly central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   0.0   2.3e-26   2.1e-22       5     152 ..     148     301 ..      33     302 .. 0.92
   2 ?   -0.7   0.0      0.14   1.2e+03     127     152 ..     544     569 ..     531     570 .. 0.73
   3 ?   -2.3   0.1      0.42   3.7e+03      33      61 ..     737     765 ..     696     774 .. 0.42

  Alignments for each domain:
  == domain 1  score: 79.7 bits;  conditional E-value: 2.3e-26
                    HHHHHC-T.---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....SCCTHHHHHHHHHHHHHHHHSSHHHHHHHHTSTTHHHHHHHHHHS. CS
  UNC45-central   5 lllkfldm.rqpesvrslallilsklldaakeefeeaiseflesll....ekgdeddllnalsvltalFpvvpdvasalflsegflesllelves. 94 
                    +l+k ++  +++++ +s+ l+++s+l +    ef++ + + +++l+    ++ ++d + +++++lt l+pv+p+++s +fl +g+ +++ e+++  
     CCD25401.1 148 FLIKAICFrMNEPEFKSIGLIVFSQLNKLFPNEFKDRVLTLVDALItevgADVGNDPVTIIINMLTKLYPVMPTLCSDIFLGKGLDDIFQERIKEt 243
                    3444444367899**************99999999999999999999999*******************************************988 PP

                    .....S-HHHHHHHHHHHHTT--SSSSSHHHHHHHHHHHHHHHH-SSHH..HHHHHHTTSST CS
  UNC45-central  95 ....kkskkvqlaalellsaAcidkkcrkaiaknyvewLeelvkssddeklvkalAavvLaK 152
                          ++++ + +l+lls+ cid+++r++i++ny+ +Le+++k       ++ ++ +vL+K
     CCD25401.1 244 gptgFGDEDFIKNLLRLLSIGCIDENVRTYISENYMPVLEQSLKDPR----FRPYSCLVLIK 301
                    999999***********************************999988....8999*****99 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.14
                    HHHHHHHH-SSHH..HHHHHHTTSST CS
  UNC45-central 127 ewLeelvkssddeklvkalAavvLaK 152
                     +Le l++++   + +++lA+ +L+K
     CCD25401.1 544 AILEYLTNKKTRVEPIRILALRALTK 569
                    46677777777777799999999998 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.42
                    HHHHHHHHHHHHHHHHHSCCTHHHHHHHH CS
  UNC45-central  33 akeefeeaiseflesllekgdeddllnal 61 
                    + e ++ ai+ f+e+l + + ++ ++ ++
     CCD25401.1 737 KDELISTAIDVFIEQLDDTELKQRFIMFF 765
                    22333344444444444444444444444 PP

>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.0   6.9e-06     0.062      23      73 ..      32      83 ..      20      93 .. 0.81
   2 ?   -2.3   0.5      0.75   6.7e+03      42      57 ..     392     411 ..     377     428 .. 0.48
   3 ?   -3.5   0.1       1.8   1.6e+04      22      35 ..     811     824 ..     800     829 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 6.9e-06
                HHHHHHHHHHHHHHHHHHHHHHHTS..S-HHHHHHHHH.HHHHHHHHHHHHH CS
         ING 23 lreiDakvqellkeidskiekflkngslqknekeeels.riqeelkeaqell 73
                + ++D  +q+++ke +s+ie+ l+++  ++ e +++l+  i++++++a +l 
  CCD25401.1 32 IEALDLLFQNTYKETNSQIEQILTRSYQDHSETRQHLQkLINKNVSKALNLF 83
                6789*******************66666666666666669999999998875 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.75
                 HHHH....TS..S-HHHHHH CS
         ING  42 ekfl....kngslqknekee 57 
                 + f     kn++++kn+ ++
  CCD25401.1 392 QGFKknknKNKNKNKNKNKN 411
                 33333323222222222222 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHHHH CS
         ING  22 elreiDakvqellk 35 
                 e+ ++D+++ ++l+
  CCD25401.1 811 EVNDMDMEYIDALQ 824
                 34456666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1972  (0.109989); expected 358.6 (0.02)
Passed bias filter:                      806  (0.0449551); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.25s 00:00:01.05 Elapsed: 00:00:00.40
# Mc/sec: 6293.08
//
Query:       CCD25402.1  [L=515]
Description: hypothetical protein NDAI_0F00830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-26   90.8   0.5    6.7e-13   49.0   0.1    3.3  3  Ank_2     Ankyrin repeats (3 copies)
    3.7e-21   73.0   2.0    0.00039   20.6   0.0    6.4  6  Ank_3     Ankyrin repeat
    2.6e-20   72.2   2.0    1.4e-07   31.7   0.0    5.7  5  Ank_5     Ankyrin repeats (many copies)
    1.4e-19   70.1   2.8    2.7e-06   27.8   0.0    4.4  4  Ank_4     Ankyrin repeats (many copies)
    1.5e-16   60.0   1.4    0.00038   20.8   0.0    6.1  5  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   4.5e-13   1.6e-09       3      79 ..      11     106 ..       9     109 .. 0.81
   2 !   49.0   0.1   1.9e-16   6.7e-13       1      81 [.     111     204 ..     111     206 .. 0.86
   3 ?   -3.3   0.0       3.9   1.4e+04      12      47 ..     377     383 ..     346     398 .. 0.60

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 4.5e-13
       Ank_2   3 lAakngnlelvklLl.egadpn.....k...ngktaLhyAakngnleivklLleh......ad....ndgrtpLhyAarsghleivklLlekgadi 79 
                  A++ g+l+ v+ +l +++d n     +    ++++L++A++n  + i+klLl +      ++    +   tpL++A+r+g+ +i ++Ll +ga +
  CCD25402.1  11 TACQGGDLNKVRKFLsQNCDENdilniQdeyHKLNPLQWAIINKRITIIKLLLGQkkcpisVNdprmEASGTPLYWAIRYGYVDITNFLLLRGARF 106
                 599999999999999999997766645267889***********999******7556888744455533559******************888875 PP

  == domain 2  score: 49.0 bits;  conditional E-value: 1.9e-16
       Ank_2   1 LhlAakngnlelvklLl.eg...adpn.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadinl 81 
                 Lh A+kn +l +v +L+ +    +d+n +   g+t+Lh+++ +++  +vk+Ll++       +n g+ p h+A++ g++ei++ L+++g d+n+
  CCD25402.1 111 LHTAIKNSHLLMVIYLVsNQsvqCDINsQdsRGNTVLHWSCFQNDPLTVKFLLKFgadaniRNNLGQLPVHFAIQRGNSEILNSLIKHGTDLNV 204
                 89999998889*****972256699998358*************9989*****978664544499*********99**********99***997 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 3.9
       Ank_2  12 lvklLlegadpnkngktaLhyAakngnleivklLle 47 
                 +                             vk Ll+
  CCD25402.1 377 T-----------------------------VKQLLK 383
                 2.............................344443 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.2   4.3e+03       6      30 ..       9      32 ..       7      33 .. 0.81
   2 !   10.9   0.0   0.00016      0.57       3      29 ..      44      70 ..      42      73 .. 0.84
   3 !   10.0   0.0   0.00032       1.1       4      27 ..      82     104 ..      81     108 .. 0.91
   4 !   10.2   0.1   0.00026      0.95       3      27 ..     108     132 ..     106     137 .. 0.84
   5 !   20.6   0.0   1.1e-07   0.00039       2      31 .]     143     171 ..     142     171 .. 0.95
   6 !   14.3   0.0   1.3e-05     0.045       2      31 .]     176     204 ..     175     204 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.2
       Ank_3  6 LhlAarsgnleivkfLlenkgadvn 30
                + +A+  g+l+ v+ +l   ++d n
  CCD25402.1  9 FLTACQGGDLNKVRKFLS-QNCDEN 32
                678999999988999999.788866 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00016
       Ank_3  3 etpLhlAarsgnleivkfLlenkgadv 29
                 +pL +A+ + +++i+k+Ll +k +++
  CCD25402.1 44 LNPLQWAIINKRITIIKLLLGQKKCPI 70
                68******************9666655 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00032
       Ank_3   4 tpLhlAarsgnleivkfLlenkga 27 
                 tpL++A+r+g ++i  fLl  +ga
  CCD25402.1  82 TPLYWAIRYGYVDITNFLLL-RGA 104
                 9******************9.887 PP

  == domain 4  score: 10.2 bits;  conditional E-value: 0.00026
       Ank_3   3 etpLhlAarsgnleivkfLlenkga 27 
                  ++Lh+A+++ +l +v++L+ n  +
  CCD25402.1 108 DSLLHTAIKNSHLLMVIYLVSNQSV 132
                 589*****************97655 PP

  == domain 5  score: 20.6 bits;  conditional E-value: 1.1e-07
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G+t Lh+ + ++++  vkfLl+ +gad n+
  CCD25402.1 143 GNTVLHWSCFQNDPLTVKFLLK-FGADANI 171
                 9*************88******.****996 PP

  == domain 6  score: 14.3 bits;  conditional E-value: 1.3e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadvna 31 
                 G+ p h+A+  gn ei+  L++ +g d+n+
  CCD25402.1 176 GQLPVHFAIQRGNSEILNSLIK-HGTDLNV 204
                 899*******************.9****95 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00045       1.6       9      48 ..      36      76 ..      27      80 .. 0.81
   2 !   14.6   0.0   8.5e-06     0.031       6      39 ..      69     103 ..      65     107 .. 0.78
   3 !    6.7   0.2    0.0026       9.5      18      36 ..     109     127 ..     101     132 .. 0.88
   4 !   31.7   0.0   3.9e-11   1.4e-07       6      56 .]     133     183 ..     129     183 .. 0.96
   5 !   23.8   0.0   1.1e-08     4e-05       1      48 [.     162     208 ..     162     211 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00045
       Ank_5  9 vnrldgggntpLhvAakygaadvvrlLl.argadlnltdsr 48
                +   + ++ +pL +A+ + + ++++lLl    + + + d r
  CCD25402.1 36 NIQDEYHKLNPLQWAIINKRITIIKLLLgQKKCPISVNDPR 76
                445567788*******************9988888887766 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 8.5e-06
       Ank_5   6 padvnrldgggn.tpLhvAakygaadvvrlLlarg 39 
                 p++vn+++ +   tpL +A++yg+ d+ ++Ll rg
  CCD25402.1  69 PISVNDPRMEASgTPLYWAIRYGYVDITNFLLLRG 103
                 6677777665556*******************554 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0026
       Ank_5  18 tpLhvAakygaadvvrlLl 36 
                 + Lh+A+k+ ++ +v++L+
  CCD25402.1 109 SLLHTAIKNSHLLMVIYLV 127
                 67****************8 PP

  == domain 4  score: 31.7 bits;  conditional E-value: 3.9e-11
       Ank_5   6 padvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 ++d+n +d +gnt+Lh+++ ++ +  v++Ll++gad+n++++ G++++++A
  CCD25402.1 133 QCDINSQDSRGNTVLHWSCFQNDPLTVKFLLKFGADANIRNNLGQLPVHFA 183
                 589**********************************************98 PP

  == domain 5  score: 23.8 bits;  conditional E-value: 1.1e-08
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsr 48 
                 Ll+ g ad n +++ g++p h+A+ +g++++++ L+++g dln+  + 
  CCD25402.1 162 LLKFG-ADANIRNNLGQLPVHFAIQRGNSEILNSLIKHGTDLNVSKET 208
                 78999.*************************************98765 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.1   0.00073       2.6       6      55 .]      10      63 ..       7      63 .. 0.77
   2 !   16.7   0.0   2.3e-06    0.0083       3      55 .]      45     100 ..      43     100 .. 0.83
   3 !   23.0   0.1   2.5e-08     9e-05       2      46 ..     108     154 ..     107     156 .. 0.86
   4 !   27.8   0.0   7.5e-10   2.7e-06      16      51 ..     158     192 ..     152     196 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00073
       Ank_4  6 hyaaisgrlelvrlLlekgad....inaqdnrs.GetalhiAakrgnveilklLl 55
                  a++ g+l  vr  l+++ d    +n q +++  +++l+ A+ + ++ i+klLl
  CCD25402.1 10 LTACQGGDLNKVRKFLSQNCDendiLNIQ-DEYhKLNPLQWAIINKRITIIKLLL 63
                56888888999999999999955555555.3333568*****************8 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.3e-06
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaq.dn..rsGetalhiAakrgnveilklLl 55 
                  +L +a+i  r+ +++lLl +++ +  + d+  +   t+l+ A++ g+v+i+ +Ll
  CCD25402.1  45 NPLQWAIINKRITIIKLLLGQKKCPISVnDPrmEASGTPLYWAIRYGYVDITNFLL 100
                 6899***************886654444144456699*****************98 PP

  == domain 3  score: 23.0 bits;  conditional E-value: 2.5e-08
       Ank_4   2 ltaLhyaaisgrlelvrlLlek.g..adinaqdnrsGetalhiAakrg 46 
                  ++Lh a++ ++l +v +L+++     din q +++G+t lh  +  +
  CCD25402.1 108 DSLLHTAIKNSHLLMVIYLVSNqSvqCDINSQ-DSRGNTVLHWSCFQN 154
                 689*****************77434477****.999*******99766 PP

  == domain 4  score: 27.8 bits;  conditional E-value: 7.5e-10
       Ank_4  16 lvrlLlekgadinaqdnrsGetalhiAakrgnveil 51 
                 +v++Ll +gad n + n+ G+ ++h+A++rgn eil
  CCD25402.1 158 TVKFLLKFGADANIR-NNLGQLPVHFAIQRGNSEIL 192
                 79*************.******************98 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0099        36       5      31 ..      46      73 ..      44      74 .. 0.73
   2 !   10.3   0.0   0.00022       0.8       4      25 ..      82     104 ..      82     105 .. 0.94
   3 !    6.2   0.2    0.0042        15       4      31 ..     109     140 ..     107     141 .. 0.86
   4 !   20.8   0.0   1.1e-07   0.00038       2      32 .]     143     174 ..     142     174 .. 0.93
   5 !   10.5   0.0   0.00018      0.66       5      28 ..     179     203 ..     176     206 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0099
                HHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank  5 PLHlAatngkkriiklLL.hGAnlnald 31
                PL +A+ n+   iiklLL +  ++ +++
  CCD25402.1 46 PLQWAIINKRITIIKLLLgQKKCPISVN 73
                899999555577******5436777666 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00022
                 BHHHHHHHHTTHHHHHHHH.TTT CS
         Ank   4 TPLHlAatngkkriiklLL.hGA 25 
                 TPL +A+++g ++i+ +LL +GA
  CCD25402.1  82 TPLYWAIRYGYVDITNFLLlRGA 104
                 9***************9987997 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0042
                 BHHHHHHHHTTHHHHHHHH..TT..TSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL..hG..Anlnald 31 
                 + LH A+ n ++ ++ +L+  ++  +++n++d
  CCD25402.1 109 SLLHTAIKNSHLLMVIYLVsnQSvqCDINSQD 140
                 67*****************75457799**999 PP

  == domain 4  score: 20.8 bits;  conditional E-value: 1.1e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBTT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnaldn 32 
                 GnT+LH+ +  +++  +k+LL  GA+ n+++n
  CCD25402.1 143 GNTVLHWSCFQNDPLTVKFLLkFGADANIRNN 174
                 9******9*9899********77******997 PP

  == domain 5  score: 10.5 bits;  conditional E-value: 0.00018
                 HHHHHHHHTTHHHHHHHH.TTTSTT CS
         Ank   5 PLHlAatngkkriiklLL.hGAnln 28 
                 P H A+++g+ +i+  L+ hG +ln
  CCD25402.1 179 PVHFAIQRGNSEILNSLIkHGTDLN 203
                 88**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1106  (0.0616878); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3651.33
//
Query:       CCD25403.1  [L=723]
Description: hypothetical protein NDAI_0F00840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-29  100.9   0.0    1.3e-28   99.4   0.0    1.8  1  XPG_N       XPG N-terminal domain
    6.1e-20   71.4   0.0    2.8e-19   69.2   0.0    2.2  2  XPG_I       XPG I-region
     0.0026   17.3   0.1      0.013   15.0   0.0    2.1  2  XPG_I_2     XPG domain containing
     0.0034   17.9   0.0      0.013   16.0   0.0    2.0  1  5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
  ------ inclusion threshold ------
      0.048   13.9   0.0       0.38   11.1   0.0    2.5  2  TPR_8       Tetratricopeptide repeat
      0.056   13.5   0.0        1.1    9.4   0.0    2.3  2  HHH_2       Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.4   0.0   4.4e-32   1.3e-28       1     100 [.       1      98 [.       1      99 [. 0.99

  Alignments for each domain:
  == domain 1  score: 99.4 bits;  conditional E-value: 4.4e-32
                 X--TTHHHHHHHH-GEEEEEGGGGTTEEEEEEHHHHHHHHHHHSE.ETTEE-BS-HHHHHHHHHHHHHHHTTEEEEEEE--S--GGGHHHHHHHHHHHH CS
       XPG_N   1 MGikgLlkllkevaairsvsiealegkklaiDaslwlyrfliavreqlgnalentshlmglfsrllrlldfgikPifVFdgkapdlkkeelekrserrq 99 
                 MGi+g+l++lk+++  ++v + ++eg++laiD+++wl+r+ ++++++l +++ + ++l+++++++++l+ ++i+P++VFdg+ +++kk+++ kr+e+r 
  CCD25403.1   1 MGIQGFLPQLKPIQ--NPVTLHRYEGQTLAIDGYAWLHRASCSCAYELVMNKPTAKYLQFFIKKISMLKRYNIEPYLVFDGDSVPVKKGTELKRREKRT 97 
                 **************..*********************************************************************************98 PP

                 H CS
       XPG_N 100 e 100
                 e
  CCD25403.1  98 E 98 
                 7 PP

>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.2   0.0   9.4e-23   2.8e-19       3      94 .]     140     227 ..     138     227 .. 0.89
   2 ?   -2.9   0.0       2.9   8.8e+03      66      89 ..     292     315 ..     283     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 69.2 bits;  conditional E-value: 9.4e-23
                 HT--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT..EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCET CS
       XPG_I   3 mgipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkkkekekkkvevidlekvlkelgltreqlidlaillgcD 94 
                   i+y+vAp+EA+ q++yL+k++ v+++iseDsDll+FG+++++++l+  +++++   e    + ++l +     +l++e l++l++l+gcD
  CCD25403.1 140 NDIKYIVAPFEADPQMVYLEKQNEVQGIISEDSDLLIFGCRRLITKLN--DYGEC--IEICRDDFTRLPRKFPLGQLDSEGLRTLVCLSGCD 227
                 679********************************************9..88888..4445566777777777778***************9 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.9
                 EEEEHHHHHHHHT--HHHHHHHHH CS
       XPG_I  66 evidlekvlkelgltreqlidlai 89 
                 ++++l+++ k l++++ +li  +i
  CCD25403.1 292 KIVSLNEIPKDLNVESLKLISQCI 315
                 678899999999999999999887 PP

>> XPG_I_2  XPG domain containing
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.2e-06     0.013      18      58 ..     139     178 ..      99     194 .. 0.71
   2 ?   -2.0   0.1      0.68     2e+03     132     173 ..     385     424 ..     367     443 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.2e-06
     XPG_I_2  18 kakditevvpgEADkfcAvlA.rklgcaVLTsDSDLlvhdlg 58 
                     +++v p+EAD +  +l  ++    + ++DSDLl++  g
  CCD25403.1 139 TNDIKYIVAPFEADPQMVYLEkQNEVQGIISEDSDLLIF--G 178
                 344568999***********98899999**********9..4 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.68
     XPG_I_2 132 kvaeksseyvaflkeyeessevksatsanalqlldprvseLl 173
                 + +e+++ +++f ++ e  ++++s+ ++++l   +++v  +l
  CCD25403.1 385 ANKENNKPIDSFFRRIE--KKSSSKAKNKSLISKNQKVPLFL 424
                 55778888899999999..55555555555555555555555 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.5e-06     0.013      18      68 ..     227     277 ..     223     310 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4.5e-06
  5_3_exonuc  18 DnipGvpgiGektAakLlkeygsleeilenldelkekklkekLeenkeear 68 
                 D   G++ iG  tA+kL+++y++++ i+  +++  + k+ +++ e+  +a+
  CCD25403.1 227 DYTDGIARIGLVTAIKLVQRYKKMDRIILGIQREGKFKVCAEFIEEYRKAD 277
                 5668************************99985444555555555444443 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00013      0.38      11      33 ..     106     128 ..     102     129 .. 0.90
   2 ?   -1.5   0.0       1.4   4.2e+03      13      25 ..     185     197 ..     184     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
                 HHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyekaleldpd 33 
                 +++ g++++A+ y++k+++  p+
  CCD25403.1 106 LWNSGEKKNAMDYFQKCVDVTPE 128
                 6899**************99885 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.4
                 HTT-HHHHHHHHH CS
       TPR_8  13 klgdyeeAkeyye 25 
                 kl+dy e +e ++
  CCD25403.1 185 KLNDYGECIEICR 197
                 6889999988765 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0       0.1   3.1e+02      39      61 ..     121     143 ..     112     146 .. 0.80
   2 ?    9.4   0.0   0.00038       1.1       7      29 ..     231     253 ..     228     255 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.1
       HHH_2  39 evddiGeeiAqsivefFeneknr 61 
                 +  d+ +e+A+ ++++ ++++ +
  CCD25403.1 121 KCVDVTPEMAKCVIDYCKTNDIK 143
                 5679************9988776 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00038
       HHH_2   7 GIrhVGektAklLakrFksldaL 29 
                 GI  +G  tA +L++r+k++d++
  CCD25403.1 231 GIARIGLVTAIKLVQRYKKMDRI 253
                 999******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4910.89
//
Query:       CCD25404.1  [L=663]
Description: hypothetical protein NDAI_0F00850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0023   18.3   0.0     0.0059   17.0   0.0    1.7  1  MULE             MULE transposase domain
  ------ inclusion threshold ------
       0.04   13.9   0.0      0.079   12.9   0.0    1.4  1  UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
       0.17   12.1   1.4        2.6    8.2   0.0    3.1  4  Flavodoxin_NdrI  NrdI Flavodoxin like
       0.18   11.9   0.0       0.55   10.4   0.0    1.7  1  TetR_C_35        Bacterial Tetracyclin repressor,  C-terminal


Domain annotation for each model (and alignments):
>> MULE  MULE transposase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.3e-06    0.0059       2      80 ..     299     377 ..     298     385 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.3e-06
        MULE   2 vvlDgTyktnkyklplltvvgvddngqlvplafalv.eseneesyewllqelleevsgqrspkviitDkekallnaleev 80 
                 +++D T++ +++k  l+++vg++   +++pla+ ++ ++e ++  + ++q l+++v+ ++s   +i+D+ k+   a++e+
  CCD25404.1 299 FLIDDTFLRGHFK-NLINIVGLTTDYRSIPLAHLFTaSHEASKACRIAIQLLKRNVDLDCSAANFICDQGKGPEAAIREE 377
                 689******9987.79999*************99982568889999999***********************99999775 PP

>> UBA_e1_thiolCys  Ubiquitin-activating enzyme active site
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.8e-05     0.079      35     105 ..     369     440 ..     353     459 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.8e-05
  UBA_e1_thiolCys  35 kfleelekekeeekletlekvlkllvkerpktfedCvkwArekfe.klFnnkikqLlynfPkdsktsdGapF 105
                          ++++e+++e+l+ + +++k l+++ +  + ++ + A ++   + ++++i++L+++fP+ +++s  + F
       CCD25404.1 369 GPEAAIREEHGKEALTLVTRLSKNLIRNAKGRVIEAFQAATHTLDpQVYEESINELIEKFPESKRNSGNSTF 440
                      45566788889999999************************9997478**************9999888877 PP

>> Flavodoxin_NdrI  NrdI Flavodoxin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.16   7.2e+02      34      72 ..      46      85 ..      28      87 .. 0.79
   2 ?   -0.3   0.1      0.25   1.1e+03      43      81 ..      93     132 ..      51     145 .. 0.50
   3 ?   -2.6   0.0       1.3     6e+03      50      74 ..     199     224 ..     195     233 .. 0.66
   4 ?    8.2   0.0   0.00058       2.6      61     102 ..     517     558 ..     491     562 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.16
                     --SS-EEEEEE--TTSSS.STSS-HHHHHHHTSHHHHHCE CS
  Flavodoxin_NdrI 34 evdepyvlivptygegee.kkavpkqvieflnkeknrkll 72
                      +++ +v  + t + +e+ k+ v+k + +f n ++n + +
       CCD25404.1 46 PLSQIFVRSTNTRSIEENiKGLVSKLISDFFNISENFDRI 85
                     5677899999999999985666999999***999998765 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.25
                      EE--TTSSS.STSS-HHHHHHHTSHHHHHCEEEEEEEE-G CS
  Flavodoxin_NdrI  43 vptygegee.kkavpkqvieflnkeknrkllrGviasGnr 81 
                          g+    k++v ++ ++fl +  +++l    +++Gnr
       CCD25404.1  93 AEILGKDILsKNEVVDKQNRFLSNAIKTALQNSGLGAGNR 132
                      3333332222445666666666666666666666666665 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.3
                      SS.STSS-HHHHHHHTSHHHHHCEEE CS
  Flavodoxin_NdrI  50 ee.kkavpkqvieflnkeknrkllrG 74 
                      e  ++++++++++ l++++ ++l++G
       CCD25404.1 199 EVvDEGLSEELEDVLKDNNREHLMTG 224
                      44477899999999996555554443 PP

  == domain 4  score: 8.2 bits;  conditional E-value: 0.00058
                      HHHTSHHHHHCEEEEEEEE-GGGGGGTTHHHHHHHHHHT--E CS
  Flavodoxin_NdrI  61 eflnkeknrkllrGviasGnrnfgeqyalaakkiakkfkvPl 102
                       ++n     +l+  v++ Gn  f  +y  a+++   k++ P+
       CCD25404.1 517 MYINCVLALALCFTVVSRGNSSFEVSYDNAGDVSLLKVNQPY 558
                      67777778899*********************9888888886 PP

>> TetR_C_35  Bacterial Tetracyclin repressor,  C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00012      0.55      28      71 ..     375     418 ..     371     425 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
   TetR_C_35  28 tgeakedLlpllTtdseplleaAsarlaevlaeswpqldeadae 71 
                 ++e  ++ l l+T  s+ l+++A+ r+ e++++   +ld++  e
  CCD25404.1 375 REEHGKEALTLVTRLSKNLIRNAKGRVIEAFQAATHTLDPQVYE 418
                 566788999*************************9999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      648  (0.0361426); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.23s 00:00:00.89 Elapsed: 00:00:00.40
# Mc/sec: 4951.52
//
Query:       CCD25405.1  [L=429]
Description: hypothetical protein NDAI_0F00860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-19   68.8   0.0    9.9e-19   67.1   0.0    2.0  1  HLH       Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
      0.089   13.2   0.4       0.29   11.5   0.2    2.0  2  CssAB     CS6 fimbrial subunits A and B, Coli surface antigen


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   1.1e-22   9.9e-19       2      53 .]     258     332 ..     257     332 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.1 bits;  conditional E-value: 1.1e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHCST.......................CSTTSS-STHHHHHHHHHHHHHHHH CS
         HLH   2 raahnerErrRRdriNsaleeLrellP.......................slppskKlsKaeiLekAveYIkhLq 53 
                 +++hn++E+++R+++N+++ +Lr+++P                       +l+p +Kl+K +iL+kA+eYI++L+
  CCD25405.1 258 KTSHNIIEKKYRKNLNDKILQLRDIVPtlrvthkknskiplddkdfydlaHLNPTRKLNKGSILTKAIEYIQYLE 332
                 79************************************************99*********************96 PP

>> CssAB  CS6 fimbrial subunits A and B, Coli surface antigen 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   3.2e-05      0.29      42      90 ..      79     128 ..      43     158 .. 0.71
   2 ?   -2.9   0.0      0.92   8.3e+03      31      61 ..     198     229 ..     178     253 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.2e-05
       CssAB  42 ivptdsltssgqqigklvnvnnpdq.nmnyyirkdsgagkfmagqkgsfs 90 
                 +  tdsl  s   +g+l +v n  q nm    r +s   ++m  +k  f 
  CCD25405.1  79 LKLTDSLEGSTTPLGQLTQVSNNYQlNMSVPRRSESNIERMMNSKKHCFV 128
                 4569***************96655449*******************9985 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.92
       CssAB  31 mtipagvsavkivptds.ltssgqqigklvnv 61 
                 m +     +vk+  tds lt    q   +v+ 
  CCD25405.1 198 MQMVERNGSVKLEVTDScLTEQELQTEAIVEA 229
                 33334445677777776355555565555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1173  (0.0654247); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 3019.83
//
Query:       CCD25406.1  [L=79]
Description: hypothetical protein NDAI_0F00870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 600.57
//
Query:       CCD25407.1  [L=81]
Description: hypothetical protein NDAI_0F00880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 652.08
//
Query:       CCD25408.1  [L=677]
Description: hypothetical protein NDAI_0F00890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.2e-101  338.3  24.2   5.4e-101  337.9  24.2    1.1  1  PalH          PalH/RIM21
  ------ inclusion threshold ------
       0.11   12.4   2.2       0.47   10.3   0.2    2.4  2  DUF4386       Domain of unknown function (DUF4386)
       0.71   10.5  15.5      0.038   14.5   4.1    2.6  2  Secretin_N_2  Secretin N-terminal domain
        1.7    9.7   6.1        1.7    9.6   0.3    3.1  2  DUF4834       Domain of unknown function (DUF4834)


Domain annotation for each model (and alignments):
>> PalH  PalH/RIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.9  24.2  1.2e-104  5.4e-101       2     329 ..     111     526 ..     110     527 .. 0.97

  Alignments for each domain:
  == domain 1  score: 337.9 bits;  conditional E-value: 1.2e-104
        PalH   2 CsiyiLtsGfllllnsksl...vtlanaavftp....kCsnss.....fskllqvledwkkntslst.....ksdnkdsFyaSiipilfslsaicVitw 83 
                 C+i++L+sG+l+l++s+++   ++ +n +v++p    +C n+s      +++lq+++ +  ++++++     ++ +++ F +++i+i+f+ +aicV++w
  CCD25408.1 111 CRINLLNSGYLQLSQSNNSidpMNDCNLTVNSPtflvRCLNKSitgidGDQILQNFT-KVLSSFNIShsiidPMLETNGFLSGMIMITFNSTAICVASW 208
                 *************9976667999*************************888888888.5555555556888899************************* PP

        PalH  84 mLvlllfllprknhkrplllklavllvaivltialakttkevfeeqyskgyqdaselekeivsstelkvlelisnlllnlaqvqivirlfs........ 174
                 m++l+l+      ++++l+++++vll+ai++t+++++t+k++f+ qy+++yqd + +ek+ ++  +lk++e ++++l n+++++iv+++++        
  CCD25408.1 209 MVYLVLLXXXXXXNNKRLMVHIYVLLYAIMHTVQMTQTVKNIFQVQYHGDYQDPRLYEKLSSTPPKLKFTESLTMTLGNINWTFIVFYMYHnnyainfp 307
                 ********9999999************************************************************************************ PP

        PalH 175 .........rqkekriiilvGlaliildtilsalllfskkfldalpalsylfelalvtlyaalviyYliskrkyilspkrm.................. 246
                           ++++r+iilvG++l+i+++ l+a+ll+ kk+l ++++l+++ +l+++t++++l++y++++++++il p+r+                  
  CCD25408.1 308 qlqrfipnyLNRSNRLIILVGSILTITNSSLYAVLLW-KKELLTIRILYKINDLSIYTIFLFLISYFIWNNFGFILLPRRInrnehstsllkgnkksns 405
                 *********88**************************.************************************************************* PP

        PalH 247 .....................................ketilllilnllvi.llpvvffildisnadvaewkeliiwvlkllitvivWewieriekler 307
                                                      +eti+lli+n++++ l+++++++++i+n++ ++wk+++i++lkllitv+vW++i+++ek+e 
  CCD25408.1 406 ninnnnnnnnnnsnnsnngkddqlsfnnklkliwndyHETIPLLIYNFIMFvLSYICSIWFTIENYYKCRWKYDTIYFLKLLITVNVWGLIGVLEKREI 504
                 *************************************************************************************************** PP

        PalH 308 keekegvLGRkisnddklevdp 329
                 +++k++vLGRki+n+dk++++p
  CCD25408.1 505 MLNKRTVLGRKINNEDKYFSNP 526
                 *******************998 PP

>> DUF4386  Domain of unknown function (DUF4386)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.078   3.5e+02      43      97 ..     188     248 ..     169     268 .. 0.64
   2 ?   10.3   0.2    0.0001      0.47      85     156 ..     277     349 ..     274     354 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.078
     DUF4386  43 llrlgllaellmalllvvlavlLypll.rrvnpg.....lallaaafrlveaaviavgllr 97 
                  ++ g+++  +++++  v+++++y +l            ++++++++ ++   v++ + ++
  CCD25408.1 188 GFLSGMIMITFNSTAICVASWMVYLVLlXXXXXXnnkrlMVHIYVLLYAIMHTVQMTQTVK 248
                 5777777777788888888888887774322111121224555555555555555555555 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0001
     DUF4386  85 lveaaviavgllrllallpllaea.aalaapalraalallllalhdygyllgliffglwllllgllllrsrll 156
                 + e+++ ++g +++++++ +  ++  a + p+l++ +   l   ++ ++l+g i+++ ++ l+++ll++++ll
  CCD25408.1 277 FTESLTMTLGNINWTFIVFYMYHNnYAINFPQLQRFIPNYLNRSNRLIILVGSILTITNSSLYAVLLWKKELL 349
                 56889999************999999999999***9*********************************9986 PP

>> Secretin_N_2  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   4.1   8.5e-06     0.038      32      81 ..     398     450 ..     368     453 .. 0.60
   2 ?    0.8   3.6      0.17   7.5e+02      21      57 ..     534     561 ..     524     580 .. 0.41

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 8.5e-06
  Secretin_N_2  32 sssssssss.ss.sgsssssssssnsssgtkietesesd.fwgeLqkalesml 81 
                   +++++s+s+ ++ +++++++s++sn+++  +++ +++ + +w++  +++  ++
    CCD25408.1 398 KGNKKSNSNiNNnNNNNNNNSNNSNNGKDDQLSFNNKLKlIWNDYHETIPLLI 450
                   33333333312223444444444444477788888887635888888876655 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.17
  Secretin_N_2  21 vtsGsvsssgsssssssssssssgsssssssssnsss 57 
                   vts+s ss +s+s +  +++        ++s  ns +
    CCD25408.1 534 VTSSSASSRSSQSFNPIDNE--------NESIINS-N 561
                   22222222222222222222........1111111.1 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.3   0.00039       1.7       6      73 ..     364     425 ..     360     444 .. 0.43
   2 ?    0.9   1.2       0.2   9.1e+02      11      58 ..     490     555 ..     448     597 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00039
     DUF4834   6 filifiiailviglsilsvilrtvfglgsrkkssksaqkqfgnstnsnqqksqsrsetkeegeiieee 73 
                  i++f+i  +++       + r++    +r++ s s  k++++s+++ +++++++  +++++++++ +
  CCD25408.1 364 TIFLFLISYFIWNNFGFILLPRRI----NRNEHSTSLLKGNKKSNSNINNNNNNN--NNNSNNSNNGK 425
                 466666666666665555566666....333333233332222222222222211..11122222222 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.2
     DUF4834  11 iiailviglsilsvilrtv...................fglgsrkkssksaqkqfgnstnsnqqksq 58 
                 + ++ +ig+   + i+ +                    +g + + +ss sa++++++s+n   ++++
  CCD25408.1 490 VNVWGLIGVLEKREIMLNKrtvlgrkinnedkyfsnpfIGYSDNVTSS-SASSRSSQSFNPIDNENE 555
                 333333333222222211122333332333333333322333333332.333333333332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1335  (0.0744604); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4584.22
//
Query:       CCD25409.1  [L=451]
Description: hypothetical protein NDAI_0F00900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-11   41.8   9.0    8.2e-11   41.8   9.0    2.0  2  bZIP_1    bZIP transcription factor
  ------ inclusion threshold ------
       0.16   12.3   2.1       0.24   11.6   0.6    2.1  2  HALZ      Homeobox associated leucine zipper
        0.2   11.9   6.0       0.28   11.4   2.9    2.7  2  Cnn_1N    Centrosomin N-terminal motif 1


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.62   3.7e+03      45      63 ..     108     126 ..     106     127 .. 0.81
   2 !   41.8   9.0   1.4e-14   8.2e-11       2      60 ..     364     425 ..     363     429 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.62
                 HHHHHHHHHHHHHHHHHHH CS
      bZIP_1  45 LkseleelkkevekLkskv 63 
                 L + l++ + ++++++ ++
  CCD25409.1 108 LPQSLSNSQSQIQQMQAQN 126
                 6678999999999999887 PP

  == domain 2  score: 41.8 bits;  conditional E-value: 1.4e-14
                 XXXXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelKrekrkqkNReaArrsRqRKqaeieeLerrvkaL...ekeNksLkseleelkkevekLk 60 
                 k l+++kr+++NR a++++RqR++ +i+ Le+++k +   +keN++Lk  ++ lkk+ ++  
  CCD25409.1 364 KLLRNTKRAAQNRNAQKAFRQRRELYIKDLETKAKIFdsiKKENEDLKTLVDFLKKKLQNCT 425
                 789******************************986522289**************998765 PP

>> HALZ  Homeobox associated leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.1   6.6e+03      10      18 ..     260     268 ..     259     272 .. 0.70
   2 ?   11.6   0.6   4.1e-05      0.24      21      43 .]     400     422 ..     397     422 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.1
        HALZ  10 LKasYdaLk 18 
                 LK s+++L 
  CCD25409.1 260 LKNSHNNLD 268
                 788888886 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 4.1e-05
        HALZ  21 ydsLkkenekLkaelqeLkeklq 43 
                 +ds+kkene Lk+ +  Lk+klq
  CCD25409.1 400 FDSIKKENEDLKTLVDFLKKKLQ 422
                 8********************97 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.25   1.5e+03      31      59 ..      98     126 ..      96     130 .. 0.67
   2 ?   11.4   2.9   4.7e-05      0.28       7      35 ..     398     426 ..     390     444 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.25
      Cnn_1N  31 eklseeqkeellkenielkveveslqkel 59 
                  ++++ + ++l +++ + + +++++q ++
  CCD25409.1  98 PRIQTPSPRQLPQSLSNSQSQIQQMQAQN 126
                 55666666777777777788888887765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 4.7e-05
      Cnn_1N   7 eqidkLkKENFdLKLriyfLeerleklse 35 
                 +  d +kKEN dLK  + fL+++l++ ++
  CCD25409.1 398 KIFDSIKKENEDLKTLVDFLKKKLQNCTN 426
                 46799*******************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1918  (0.106978); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3250.64
//
Query:       CCD25410.1  [L=583]
Description: hypothetical protein NDAI_0F00910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-47  154.9  21.3    4.2e-07   29.5   1.8    9.5  9  TPR_1       Tetratricopeptide repeat
    8.6e-39  128.5  21.4    1.8e-06   27.6   1.2    9.5  9  TPR_2       Tetratricopeptide repeat
    1.3e-37  127.4  15.8    1.2e-18   66.7   4.5    3.0  3  STI1        STI1 domain
    2.9e-25   87.7  26.6    4.9e-05   22.9   0.0    8.8  9  TPR_11      TPR repeat
    4.1e-22   76.5  22.9    9.5e-05   22.3   0.5    9.2  9  TPR_8       Tetratricopeptide repeat
    4.8e-21   74.8  10.9    6.1e-08   32.8   0.2    6.4  7  TPR_12      Tetratricopeptide repeat
    7.2e-19   68.2   2.8    0.00065   20.3   0.0    6.7  6  TPR_16      Tetratricopeptide repeat
    4.7e-18   64.3   1.6       0.76   10.8   0.0    8.8  8  TPR_14      Tetratricopeptide repeat
    4.5e-12   45.5  10.8      0.061   13.7   0.0    7.4  7  TPR_17      Tetratricopeptide repeat
    8.7e-12   45.4  16.3     0.0081   16.7   0.2    6.6  6  TPR_19      Tetratricopeptide repeat
    5.6e-11   41.7   6.1      0.003   17.5   0.0    7.0  7  TPR_7       Tetratricopeptide repeat
    4.4e-10   39.1   6.8      0.093   12.6   0.5    6.9  7  TPR_10      Tetratricopeptide repeat
    1.8e-06   28.0   0.0     0.0058   16.7   0.0    4.1  4  TPR_9       Tetratricopeptide repeat
    2.4e-05   23.9   2.5       0.82    9.0   0.0    4.5  4  TPR_MalT    MalT-like TPR region
     0.0002   21.8  17.0        5.7    7.8   0.0    7.8  7  TPR_6       Tetratricopeptide repeat
    0.00048   19.0   2.1     0.0013   17.5   0.1    2.5  3  DUF3808     Protein of unknown function (DUF3808)
     0.0019   18.4  14.0        1.3    9.3   0.1    5.1  4  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
     0.0076   16.6   0.2      0.032   14.5   0.3    5.1  5  TPR_20      Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.02   14.3   9.6         11    5.5   0.1    6.5  7  SHNi-TPR    SHNi-TPR
      0.064   14.0   1.2        6.2    7.6   0.0    3.7  3  Sel1        Sel1 repeat
       0.17   12.4   7.5         15    6.0   0.0    5.1  6  BTAD        Bacterial transcriptional activator domain
       0.19   11.8   4.4         32    4.7   0.5    4.5  4  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
        0.2   12.3  12.2        4.1    8.1   0.2    4.8  5  DnaI_N      Primosomal protein DnaI N-terminus
       0.22   11.7   1.8         10    6.4   0.0    4.1  4  PPR_2       PPR repeat family
       0.28   11.5   2.2    1.3e+02    3.1   0.0    5.1  5  PPR         PPR repeat
        0.6    9.8  22.2       0.44   10.2   0.4    6.3  7  RPN7        26S proteasome subunit RPN7
        1.1    9.3   0.0        1.1    9.3   0.0    4.8  4  MAS20       MAS20 protein import receptor


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.4e-08     9e-06       1      33 [.       5      37 ..       5      38 .. 0.95
   2 !   13.8   0.0   5.8e-05     0.038       4      33 ..      43      72 ..      41      72 .. 0.90
   3 !   29.5   1.8   6.4e-10   4.2e-07       2      34 .]      75     107 ..      74     107 .. 0.95
   4 !   13.2   0.5   8.8e-05     0.059       8      27 ..     262     281 ..     260     287 .. 0.89
   5 ?    4.7   0.0     0.044        29       9      28 ..     296     315 ..     289     317 .. 0.83
   6 !   26.4   0.1   5.9e-09   3.9e-06       1      29 [.     329     357 ..     329     361 .. 0.93
   7 !   11.5   0.0   0.00031      0.21       8      34 .]     396     422 ..     394     422 .. 0.94
   8 !   27.3   0.0   3.1e-09   2.1e-06       1      34 []     423     456 ..     423     456 .. 0.97
   9 !    8.8   0.1    0.0022       1.5       2      28 ..     458     484 ..     457     489 .. 0.90

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.4e-08
                HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  1 akalynlGnayfklgkydeAleyyekALelnPn 33
                a+ +++ Gna f  +++++A+e + kA+e+ P+
  CCD25410.1  5 ADEYKQQGNAAFTSKDFNKAIELFTKAIEVSPT 37
                788***************************997 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 5.8e-05
                HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  4 lynlGnayfklgkydeAleyyekALelnPn 33
                + n+ +ay + ++++eAl +  +++++nP+
  CCD25410.1 43 YSNRSAAYTSAKQFQEALNDATECVKINPT 72
                6666689**********************6 PP

  == domain 3  score: 29.5 bits;  conditional E-value: 6.4e-10
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                 k +++lG+a f lg+++eA++ y++AL+l+ nn
  CCD25410.1  75 KGYNRLGAAEFGLGNLEEAEKNYKEALKLDNNN 107
                 78****************************887 PP

  == domain 4  score: 13.2 bits;  conditional E-value: 8.8e-05
                 HHHHHHTT-HHHHHHHHHHH CS
       TPR_1   8 GnayfklgkydeAleyyekA 27 
                 Gn ++k  k+deA+e y+kA
  CCD25410.1 262 GNKLYKAHKFDEAIEQYNKA 281
                 8999***************9 PP

  == domain 5  score: 4.7 bits;  conditional E-value: 0.044
                 HHHHHTT-HHHHHHHHHHHH CS
       TPR_1   9 nayfklgkydeAleyyekAL 28 
                 +a f++g+++ A++  ++A+
  CCD25410.1 296 AAEFEKGDFETAIATLNEAV 315
                 67799***********9997 PP

  == domain 6  score: 26.4 bits;  conditional E-value: 5.9e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALe 29 
                 ak++ ++Gnay+k+g++++ ++yy+k L+
  CCD25410.1 329 AKSFARIGNAYHKKGDLKKSIDYYQKSLT 357
                 78999*********************996 PP

  == domain 7  score: 11.5 bits;  conditional E-value: 0.00031
                 HHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPnn 34 
                 G  yf +g++  A+++y++ ++  P++
  CCD25410.1 396 GKEYFTKGDWPNAVKAYSEMIKRAPED 422
                 789*********************986 PP

  == domain 8  score: 27.3 bits;  conditional E-value: 3.1e-09
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALelnPnn 34 
                 a+ + n+++a+ kl  + eA+++++ A++ +Pn+
  CCD25410.1 423 ARGYSNRAAALSKLMSFPEAIKDCDNAIKKDPNF 456
                 789*****************************97 PP

  == domain 9  score: 8.8 bits;  conditional E-value: 0.0022
                 HHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekAL 28 
                 +a+ +++ a    ++y  Al+  e+A 
  CCD25410.1 458 RAYIRKATAQIAIKEYANALDTLEEAK 484
                 89**********************996 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   3.2e-07   0.00021       1      33 [.       5      37 ..       5      38 .. 0.93
   2 !   16.1   0.0   1.3e-05    0.0085       3      33 ..      42      72 ..      40      73 .. 0.95
   3 !   27.6   1.2   2.8e-09   1.8e-06       2      34 .]      75     107 ..      74     107 .. 0.96
   4 !   12.8   0.8   0.00016       0.1       8      32 ..     262     286 ..     256     288 .. 0.88
   5 !    9.1   0.0    0.0024       1.6       3      28 ..     290     315 ..     288     318 .. 0.93
   6 !   18.4   0.0   2.3e-06    0.0015       2      29 ..     330     357 ..     329     361 .. 0.89
   7 !   12.2   0.0   0.00024      0.16       5      34 .]     393     422 ..     389     422 .. 0.89
   8 !   12.0   0.0   0.00026      0.17       1      33 [.     423     455 ..     423     456 .. 0.95
   9 ?    5.5   0.1     0.033        22       2      30 ..     458     486 ..     457     489 .. 0.90

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 3.2e-07
       TPR_2  1 aealynlGlayyklgdyeeAleafekAleldPn 33
                a+ + ++G+a++ ++d+++A+e+f kA+e  P+
  CCD25410.1  5 ADEYKQQGNAAFTSKDFNKAIELFTKAIEVSPT 37
                577999***********************9997 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 1.3e-05
       TPR_2  3 alynlGlayyklgdyeeAleafekAleldPn 33
                ++ n+  ay  +++++eAl++  ++++++P+
  CCD25410.1 42 LYSNRSAAYTSAKQFQEALNDATECVKINPT 72
                689***************************8 PP

  == domain 3  score: 27.6 bits;  conditional E-value: 2.8e-09
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 +++++lG a + lg++eeA++ +++Al+ld nn
  CCD25410.1  75 KGYNRLGAAEFGLGNLEEAEKNYKEALKLDNNN 107
                 689***************************997 PP

  == domain 4  score: 12.8 bits;  conditional E-value: 0.00016
       TPR_2   8 GlayyklgdyeeAleafekAleldP 32 
                 G+ +yk+ +++eA+e ++kA +l+ 
  CCD25410.1 262 GNKLYKAHKFDEAIEQYNKAWALNK 286
                 899*****************77765 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.0024
       TPR_2   3 alynlGlayyklgdyeeAleafekAl 28 
                 +l+n+  a +++gd+e A++ +++A+
  CCD25410.1 290 YLNNRSAAEFEKGDFETAIATLNEAV 315
                 799*********************97 PP

  == domain 6  score: 18.4 bits;  conditional E-value: 2.3e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAle 29 
                 +   ++G+ay k+gd+++ +++++k+l 
  CCD25410.1 330 KSFARIGNAYHKKGDLKKSIDYYQKSLT 357
                 567799*******************995 PP

  == domain 7  score: 12.2 bits;  conditional E-value: 0.00024
       TPR_2   5 ynlGlayyklgdyeeAleafekAleldPnn 34 
                    G+ y+ +gd+  A++a+ + ++ +P++
  CCD25410.1 393 RLEGKEYFTKGDWPNAVKAYSEMIKRAPED 422
                 678999**********************86 PP

  == domain 8  score: 12.0 bits;  conditional E-value: 0.00026
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a+++ n++ a+ kl  + eA+++++ A++ dPn
  CCD25410.1 423 ARGYSNRAAALSKLMSFPEAIKDCDNAIKKDPN 455
                 67899***************************9 PP

  == domain 9  score: 5.5 bits;  conditional E-value: 0.033
       TPR_2   2 ealynlGlayyklgdyeeAleafekAlel 30 
                 +a+ + + a ++ ++y+ Al+ +e+A + 
  CCD25410.1 458 RAYIRKATAQIAIKEYANALDTLEEAKSK 486
                 6999*********************9765 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   3.0   3.7e-21   2.5e-18       1      55 []     138     193 ..     138     193 .. 0.97
   2 ?   -2.4   0.0       7.1   4.7e+03      16      25 ..     449     458 ..     448     460 .. 0.76
   3 !   66.7   4.5   1.8e-21   1.2e-18       2      54 ..     521     573 ..     520     574 .. 0.97

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 3.7e-21
        STI1   1 dpelfaklaanPetrellsDPefvakleeiqsNPqalqqym.sDprimtvlsvLmg 55 
                 dp+l+ kl+anP+t+++++DP fv k+   q+NP+++ q m  Dpr mtvl  Lmg
  CCD25410.1 138 DPNLIDKLKANPKTKDFMNDPVFVGKILGYQKNPASMTQDMmTDPRLMTVLAALMG 193
                 8************************************88888*************8 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7.1
        STI1  16 ellsDPefva 25 
                 ++ +DP fv 
  CCD25410.1 449 AIKKDPNFVR 458
                 5778999985 PP

  == domain 3  score: 66.7 bits;  conditional E-value: 1.8e-21
        STI1   2 pelfaklaanPetrellsDPefvakleeiqsNPqalqqymsDprimtvlsvLm 54 
                 +e +++++++Pe++++++DP ++++l++ q+NP+alq++m++p+i+++++ L+
  CCD25410.1 521 EETYKRAMQDPEVAAIMQDPVMQSILQQAQTNPAALQEHMKNPEISKKIQILI 573
                 899***********************************************997 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0033       2.2       1      26 [.      12      37 ..      12      43 .. 0.93
   2 ?    2.4   0.0      0.19   1.2e+02       3      42 .]      49      88 ..      48      88 .. 0.87
   3 !   18.5   1.7   1.7e-06    0.0011       3      27 ..      83     107 ..      81     110 .. 0.90
   4 !   17.4   0.3     4e-06    0.0027       1      26 [.     262     287 ..     262     288 .. 0.95
   5 !   11.5   0.0   0.00027      0.18       3      22 ..     297     316 ..     296     317 .. 0.92
   6 !   11.4   0.1    0.0003       0.2       1      21 [.     336     356 ..     336     357 .. 0.94
   7 !   22.9   0.0   7.5e-08   4.9e-05       1      40 [.     396     435 ..     396     436 .. 0.96
   8 !    8.8   0.0    0.0019       1.3      10      31 ..     439     460 ..     438     467 .. 0.90
   9 ?   -1.7   0.2       3.7   2.5e+03      13      22 ..     469     478 ..     469     483 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0033
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPd 26
                G+a +   ++++Aie + kA++ +P+
  CCD25410.1 12 GNAAFTSKDFNKAIELFTKAIEVSPT 37
                88999999***************996 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.19
      TPR_11  3 ayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42
                ay++  ++ eA+++  + +k++P+    y+ LG+a + +G
  CCD25410.1 49 AYTSAKQFQEALNDATECVKINPTWSKGYNRLGAAEFGLG 88
                7899999999999999999999999999999999966665 PP

  == domain 3  score: 18.5 bits;  conditional E-value: 1.7e-06
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdn 27 
                 a + +G++eeA ++Yk+Alkld++n
  CCD25410.1  83 AEFGLGNLEEAEKNYKEALKLDNNN 107
                 77889******************99 PP

  == domain 4  score: 17.4 bits;  conditional E-value: 4e-06
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPd 26 
                 G+ +y+  k++eAie+Y+kA +l+ d
  CCD25410.1 262 GNKLYKAHKFDEAIEQYNKAWALNKD 287
                 999*******************9986 PP

  == domain 5  score: 11.5 bits;  conditional E-value: 0.00027
      TPR_11   3 ayyeqGkyeeAieaYkkAlk 22 
                 a +e+G++e Ai+ +++A++
  CCD25410.1 297 AEFEKGDFETAIATLNEAVD 316
                 689***************86 PP

  == domain 6  score: 11.4 bits;  conditional E-value: 0.0003
      TPR_11   1 GdayyeqGkyeeAieaYkkAl 21 
                 G+ay+++G+++++i  Y+k l
  CCD25410.1 336 GNAYHKKGDLKKSIDYYQKSL 356
                 9*****************965 PP

  == domain 7  score: 22.9 bits;  conditional E-value: 7.5e-08
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayyk 40 
                 G++y+ +G++++A++aY++ +k  P++a+ y+n+++a+ k
  CCD25410.1 396 GKEYFTKGDWPNAVKAYSEMIKRAPEDARGYSNRAAALSK 435
                 89***********************************977 PP

  == domain 8  score: 8.8 bits;  conditional E-value: 0.0019
      TPR_11  10 yeeAieaYkkAlkldPdnaeay 31 
                 ++eAi++  +A+k dP++++ay
  CCD25410.1 439 FPEAIKDCDNAIKKDPNFVRAY 460
                 689******************9 PP

  == domain 9  score: -1.7 bits;  conditional E-value: 3.7
      TPR_11  13 AieaYkkAlk 22 
                 Ai++Y +Al+
  CCD25410.1 469 AIKEYANALD 478
                 7888888874 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.3e-05     0.035       7      33 ..      11      37 ..       8      38 .. 0.92
   2 !    8.1   0.0    0.0053       3.5       4      32 ..      43      71 ..      41      72 .. 0.92
   3 !   22.3   0.5   1.4e-07   9.5e-05       2      34 .]      75     107 ..      74     107 .. 0.94
   4 ?    3.5   0.2      0.16     1e+02      16      32 ..     270     286 ..     267     288 .. 0.85
   5 !    8.2   0.0    0.0048       3.2       3      28 ..     290     315 ..     288     317 .. 0.86
   6 !   20.5   0.3   5.6e-07   0.00037       1      28 [.     329     356 ..     329     358 .. 0.93
   7 ?    1.4   0.0       0.7   4.7e+02       8      34 .]     396     422 ..     394     422 .. 0.87
   8 ?   -0.4   0.0       2.7   1.8e+03       1      33 [.     423     455 ..     423     456 .. 0.82
   9 ?    6.0   0.3     0.025        17       2      27 ..     458     483 ..     457     485 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 5.3e-05
                HHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  7 lgsiylklgdyeeAkeyyekaleldpd 33
                 g++ ++ +d+++A+e + ka+e +p+
  CCD25410.1 11 QGNAAFTSKDFNKAIELFTKAIEVSPT 37
                589999******************996 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0053
                HHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8  4 yynlgsiylklgdyeeAkeyyekaleldp 32
                y n + +y + ++++eA     ++++++p
  CCD25410.1 43 YSNRSAAYTSAKQFQEALNDATECVKINP 71
                7788889*********************9 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 1.4e-07
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 + y++lg + + lg++eeA++ y++al+ld +n
  CCD25410.1  75 KGYNRLGAAEFGLGNLEEAEKNYKEALKLDNNN 107
                 679***************************986 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.16
                 -HHHHHHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekaleldp 32 
                 +++eA+e y+ka  l++
  CCD25410.1 270 KFDEAIEQYNKAWALNK 286
                 689********977776 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0048
                 HHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekal 28 
                 +++n + + +++gd+e A++++++a+
  CCD25410.1 290 YLNNRSAAEFEKGDFETAIATLNEAV 315
                 56777788899*************98 PP

  == domain 6  score: 20.5 bits;  conditional E-value: 5.6e-07
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekal 28 
                 a++  ++g++y+k+gd+++++ yy+k l
  CCD25410.1 329 AKSFARIGNAYHKKGDLKKSIDYYQKSL 356
                 67899*********************98 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.7
                 HHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldpdn 34 
                 g+ y+++gd  +A+++y + ++ +p++
  CCD25410.1 396 GKEYFTKGDWPNAVKAYSEMIKRAPED 422
                 678999999999******999999975 PP

  == domain 8  score: -0.4 bits;  conditional E-value: 2.7
                 CCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   1 aeayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a+ y n + +++kl  + eA++ +  a++ dp+
  CCD25410.1 423 ARGYSNRAAALSKLMSFPEAIKDCDNAIKKDPN 455
                 5678888888888888889****9999997776 PP

  == domain 9  score: 6.0 bits;  conditional E-value: 0.025
                 CHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyeka 27 
                 +ay +++ + +  ++y +A  ++e+a
  CCD25410.1 458 RAYIRKATAQIAIKEYANALDTLEEA 483
                 89**********************99 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     5e-06    0.0033       8      74 ..      10      69 ..       4      72 .. 0.91
   2 !   16.4   0.2   1.2e-05    0.0081       6      33 ..      77     104 ..      74     111 .. 0.78
   3 ?    4.4   0.1     0.069        46      55      72 ..     265     282 ..     259     287 .. 0.75
   4 !   32.8   0.2   9.2e-11   6.1e-08       6      72 ..     291     356 ..     286     357 .. 0.92
   5 ?   -0.9   0.0         3     2e+03      14      47 ..     400     432 ..     399     436 .. 0.61
   6 ?    4.3   0.3     0.075        50       4      71 ..     424     483 ..     421     485 .. 0.78
   7 ?    1.3   0.2      0.63   4.2e+02       6      29 ..     460     483 ..     455     495 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 5e-06
      TPR_12  8 nlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealai 74
                + +++ +  +++ +A+el+ ka+e+    + p+h      + n + +y  +++++eAl+  +e+++i
  CCD25410.1 10 QQGNAAFTSKDFNKAIELFTKAIEVS---PTPNH----VLYSNRSAAYTSAKQFQEALNDATECVKI 69
                5799999*******************...66***....579******************99999887 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 1.2e-05
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleia 33 
                 +n+l+a+++ lg+++eA++++++al + 
  CCD25410.1  77 YNRLGAAEFGLGNLEEAEKNYKEALKLD 104
                 6678888888888888888888888775 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.069
      TPR_12  55 yralgryeeAlelleeal 72 
                 ++++ +++eA+e +++a 
  CCD25410.1 265 LYKAHKFDEAIEQYNKAW 282
                 567778899999998885 PP

  == domain 4  score: 32.8 bits;  conditional E-value: 9.2e-11
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 lnn+ a++++ g+++ A++ l++a+++ r+l   d+   a +   +g +y++ g++++ +++++++l
  CCD25410.1 291 LNNRSAAEFEKGDFETAIATLNEAVDQGRELR-ADYKIIAKSFARIGNAYHKKGDLKKSIDYYQKSL 356
                 6789************************9997.5667****************************99 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 3
      TPR_12  14 rrlgrydeAlellekaleia.rrllGpdhpltatt 47 
                 +  g++  A + + + + +a + + G  +   a++
  CCD25410.1 400 FTKGDWPNAVKAYSEMIKRApEDARGYSN--RAAA 432
                 66788888888888877777555554333..4444 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.075
      TPR_12   4 talnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleea 71 
                 + ++n+aa+l +l  + eA++ ++ a   +     ++ p+ +++++  ++++ a ++y+ Al+ leea
  CCD25410.1 424 RGYSNRAAALSKLMSFPEAIKDCDNA---I-----KKDPNFVRAYIRKATAQIAIKEYANALDTLEEA 483
                 66788899999999999999999988...3.....556667888888888888888888888888887 PP

  == domain 7  score: 1.3 bits;  conditional E-value: 0.63
      TPR_12   6 lnnlaavlrrlgrydeAlelleka 29 
                 + + a++  + ++y+ Al+ le+a
  CCD25410.1 460 YIRKATAQIAIKEYANALDTLEEA 483
                 334444444555555555555555 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0023       1.5       3      53 ..      11      59 ..       9      65 .. 0.70
   2 !    9.1   0.1    0.0032       2.1       3      27 ..      80     104 ..      78     111 .. 0.85
   3 !   14.5   0.2   6.3e-05     0.042       4      63 ..     262     317 ..     260     324 .. 0.91
   4 !   13.1   0.0   0.00017      0.11       6      62 ..     297     357 ..     292     363 .. 0.90
   5 !   20.3   0.0   9.8e-07   0.00065       3      65 ..     395     454 ..     393     455 .. 0.93
   6 !    7.9   0.0    0.0074       4.9      13      61 ..     439     484 ..     438     489 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0023
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53
                +++aa+ ++d+ +A+++++ a++  p +  ++  + ++  a+  ++ ++eA
  CCD25410.1 11 QGNAAFTSKDFNKAIELFTKAIEVSPTP--NHVLYSNRSAAYTSAKQFQEA 59
                89********************999533..333333444444455555555 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0032
      TPR_16   3 laraalragdyddAaaaleaalkrd 27 
                 l+ a + +g+ ++A++ +++alk+d
  CCD25410.1  80 LGAAEFGLGNLEEAEKNYKEALKLD 104
                 6778889999999999999999987 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 6.3e-05
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalra 63 
                 ++ +++a ++d+A+++++ a ++++    +   l+++  a +++g+++ A+a +++a+++
  CCD25410.1 262 GNKLYKAHKFDEAIEQYNKAWALNK----DITYLNNRSAAEFEKGDFETAIATLNEAVDQ 317
                 67799*******************4....7899999999999**************9976 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 0.00017
      TPR_16   6 aalragdyddAaaaleaalkrdpssPd....aaeAllllgdaalrqgrlaeAaalyraalr 62 
                 a ++ gd++ A+a l++a++++++  +     a +    g+a+ ++g+l++ +++y++ l+
  CCD25410.1 297 AEFEKGDFETAIATLNEAVDQGRELRAdykiIAKSFARIGNAYHKKGDLKKSIDYYQKSLT 357
                 67899*****************77777****9************************99884 PP

  == domain 5  score: 20.3 bits;  conditional E-value: 9.8e-07
      TPR_16   3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraap 65 
                 ++++++  gd++ A++a+ + +kr+   P++a+ + +++ a+ ++  ++eA+  ++ a++ +p
  CCD25410.1 395 EGKEYFTKGDWPNAVKAYSEMIKRA---PEDARGYSNRAAALSKLMSFPEAIKDCDNAIKKDP 454
                 6899*********************...************************98888888887 PP

  == domain 6  score: 7.9 bits;  conditional E-value: 0.0074
      TPR_16  13 yddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 +++A++  + a+k+d   P  ++A+  ++ a  + +++a A++ +++a 
  CCD25410.1 439 FPEAIKDCDNAIKKD---PNFVRAYIRKATAQIAIKEYANALDTLEEAK 484
                 679999999******...************************9998874 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0      0.01       6.7       3      33 ..       7      37 ..       5      44 .. 0.88
   2 ?    1.1   0.0       1.4   9.5e+02       8      33 ..      47      72 ..      41      77 .. 0.85
   3 !   10.8   0.0    0.0011      0.76       6      34 ..      79     107 ..      74     115 .. 0.84
   4 ?    3.9   0.0      0.19   1.3e+02      12      33 ..     266     287 ..     262     296 .. 0.85
   5 ?    6.9   0.0     0.019        13       9      31 ..     296     318 ..     290     326 .. 0.86
   6 ?    5.2   0.0     0.072        48       5      31 ..     333     359 ..     329     368 .. 0.84
   7 !   10.2   0.0    0.0017       1.1       8      38 ..     396     426 ..     389     433 .. 0.84
   8 !    7.9   0.0    0.0094       6.2       7      42 ..     429     464 ..     425     466 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.01
      TPR_14  3 allalaeallalGdpdeAiallrralalaPd 33
                 +++ + a +++ d+ +Ai+l+ +a++  P+
  CCD25410.1  7 EYKQQGNAAFTSKDFNKAIELFTKAIEVSPT 37
                5788999********************9997 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 1.4
      TPR_14  8 aeallalGdpdeAiallrralalaPd 33
                 +a+  + +++eA++ + ++++ +P+
  CCD25410.1 47 SAAYTSAKQFQEALNDATECVKINPT 72
                5789999******9999999998885 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.0011
      TPR_14   6 alaeallalGdpdeAiallrralalaPdd 34 
                 +l++a++ lG+++eA++ +++al+l+ ++
  CCD25410.1  79 RLGAAEFGLGNLEEAEKNYKEALKLDNNN 107
                 7999********************98655 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.19
      TPR_14  12 lalGdpdeAiallrralalaPd 33 
                 + + ++deAi+ +++a al+ d
  CCD25410.1 266 YKAHKFDEAIEQYNKAWALNKD 287
                 56789**********9888776 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.019
      TPR_14   9 eallalGdpdeAiallrralala 31 
                 +a+++ Gd+++Aia l++a++++
  CCD25410.1 296 AAEFEKGDFETAIATLNEAVDQG 318
                 678899*************9986 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.072
      TPR_14   5 lalaeallalGdpdeAiallrralala 31 
                 ++++ a+   Gd++++i+++++ l  +
  CCD25410.1 333 ARIGNAYHKKGDLKKSIDYYQKSLTEH 359
                 67899*****************98765 PP

  == domain 7  score: 10.2 bits;  conditional E-value: 0.0017
      TPR_14   8 aeallalGdpdeAiallrralalaPddaeaw 38 
                 ++ +++ Gd+  A++++ +++++aP+da+ +
  CCD25410.1 396 GKEYFTKGDWPNAVKAYSEMIKRAPEDARGY 426
                 5668999********************9976 PP

  == domain 8  score: 7.9 bits;  conditional E-value: 0.0094
      TPR_14   7 laeallalGdpdeAiallrralalaPddaeawllla 42 
                 +a+al  l  + eAi+ ++ a++++P++ +a+++ a
  CCD25410.1 429 RAAALSKLMSFPEAIKDCDNAIKKDPNFVRAYIRKA 464
                 577777788899*********************998 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00067      0.44       1      33 [.      27      60 ..      27      61 .. 0.96
   2 !   13.7   0.0   9.1e-05     0.061       3      34 .]      64      95 ..      62      95 .. 0.94
   3 ?   -1.1   0.4       4.9   3.2e+03       2      12 ..      97     107 ..      96     111 .. 0.87
   4 ?    0.7   0.0       1.3   8.9e+02      14      33 ..     289     308 ..     270     309 .. 0.73
   5 ?    1.7   0.0      0.62   4.1e+02      13      32 ..     329     348 ..     326     350 .. 0.84
   6 ?    5.9   0.0     0.029        19       2      26 ..     412     436 ..     411     444 .. 0.85
   7 !   11.8   0.1   0.00037      0.25       2      32 ..     446     476 ..     445     478 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00067
      TPR_17  1 lylkaleldPn.nadaynnLAelllknGdlmtAr 33
                l++ka+e  P+ n ++y n+  ++ +++++++A+
  CCD25410.1 27 LFTKAIEVSPTpNHVLYSNRSAAYTSAKQFQEAL 60
                799****************************996 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 9.1e-05
      TPR_17  3 lkaleldPnnadaynnLAelllknGdlmtArq 34
                +++++++P+ ++ yn L+ +   +G+l++A++
  CCD25410.1 64 TECVKINPTWSKGYNRLGAAEFGLGNLEEAEK 95
                68****************************85 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 4.9
      TPR_17   2 ylkaleldPnn 12 
                 y++al+ld nn
  CCD25410.1  97 YKEALKLDNNN 107
                 999***99887 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 1.3
      TPR_17  14 daynnLAelllknGdlmtAr 33 
                   +nn+  +  ++Gd++tA+
  CCD25410.1 289 TYLNNRSAAEFEKGDFETAI 308
                 44677777777999999997 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.62
      TPR_17  13 adaynnLAelllknGdlmtA 32 
                 a+++   +++++k+Gdl++ 
  CCD25410.1 329 AKSFARIGNAYHKKGDLKKS 348
                 5677889*********9875 PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.029
      TPR_17   2 ylkaleldPnnadaynnLAelllkn 26 
                 y + +++ P +a  y n+A +l+k+
  CCD25410.1 412 YSEMIKRAPEDARGYSNRAAALSKL 436
                 77889*****************986 PP

  == domain 7  score: 11.8 bits;  conditional E-value: 0.00037
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 + +a+++dPn + ay  +A+++  +++++ A
  CCD25410.1 446 CDNAIKKDPNFVRAYIRKATAQIAIKEYANA 476
                 679******************9999998877 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0049       3.3       4      45 ..      18      60 ..      15      61 .. 0.86
   2 ?    6.2   0.5     0.023        15       5      27 ..      88     110 ..      82     115 .. 0.83
   3 !   13.3   0.7   0.00013     0.089       1      61 [.     265     325 ..     265     330 .. 0.87
   4 !    7.7   0.0    0.0076       5.1       4      45 ..     402     443 ..     399     444 .. 0.91
   5 !   16.7   0.2   1.2e-05    0.0081       7      54 ..     439     486 ..     438     490 .. 0.92
   6 ?   -0.6   0.1       2.9     2e+03      11      38 ..     543     575 ..     525     576 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0049
      TPR_19  4 egdyaeAlalleqalqedpk.naearllLAeallalgqldeAe 45
                ++d+  A++l+++a++ +p  n  +  +   a+ +++q++eA 
  CCD25410.1 18 SKDFNKAIELFTKAIEVSPTpNHVLYSNRSAAYTSAKQFQEAL 60
                689*****************6666666999999999***9996 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.023
      TPR_19   5 gdyaeAlalleqalqedpknaea 27 
                 g+++eA + +++al+ d++n  a
  CCD25410.1  88 GNLEEAEKNYKEALKLDNNNNKA 110
                 89999999999999999987665 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 0.00013
      TPR_19   1 llaegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd.ary 61 
                 l+++ +++eA++ + +a++ + +  ++      a ++ g+++ A+a+L+++ ++ +   a+y
  CCD25410.1 265 LYKAHKFDEAIEQYNKAWALNKDITYLNN-RSAAEFEKGDFETAIATLNEAVDQGRELrADY 325
                 678899**************998888888.899******************99988743555 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0076
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                  gd  +A+++++++++ +p++a+   + A al +l  + eA+
  CCD25410.1 402 KGDWPNAVKAYSEMIKRAPEDARGYSNRAAALSKLMSFPEAI 443
                 59999********************99999999998888886 PP

  == domain 5  score: 16.7 bits;  conditional E-value: 1.2e-05
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpee 54 
                 + eA++   +a+++dp+  +a ++ A a++a ++++ A ++L+++  +
  CCD25410.1 439 FPEAIKDCDNAIKKDPNFVRAYIRKATAQIAIKEYANALDTLEEAKSK 486
                 569***************************************998665 PP

  == domain 6  score: -0.6 bits;  conditional E-value: 2.9
      TPR_19  11 lalleq......alqedpknaearllLAeallal 38 
                 +++l+q      alqe  kn+e+    +++l+a+
  CCD25410.1 543 QSILQQaqtnpaALQEHMKNPEISK-KIQILIAA 575
                 5566664444445677777777766.66666665 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0055       3.6      11      32 ..      17      36 ..       8      41 .. 0.73
   2 !    7.5   0.2    0.0067       4.4       3      33 ..      78     108 ..      77     111 .. 0.76
   3 ?   -0.7   0.0       2.9   1.9e+03      14      29 ..     270     285 ..     270     289 .. 0.74
   4 ?    1.1   0.0      0.75     5e+02      11      24 ..     300     313 ..     296     322 .. 0.81
   5 !   17.5   0.0   4.6e-06     0.003       2      28 ..     332     358 ..     331     366 .. 0.85
   6 ?    2.2   0.0      0.33   2.2e+02       9      35 ..     399     423 ..     399     424 .. 0.84
   7 ?   -1.3   0.1       4.4   2.9e+03      11      28 ..     469     484 ..     459     491 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0055
       TPR_7 11 rlGdyeeAielyeqsLaltkdp 32
                   d+ +Aiel+++  a++ +p
  CCD25410.1 17 TSKDFNKAIELFTK--AIEVSP 36
                55699*********..666555 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0067
       TPR_7   3 lnLarlysrlGdyeeAielyeqsLaltkdpe 33 
                 ++L+ + + lG+ eeA++ y+++L l++  +
  CCD25410.1  78 NRLGAAEFGLGNLEEAEKNYKEALKLDNNNN 108
                 5666666679************887777655 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 2.9
       TPR_7  14 dyeeAielyeqsLalt 29 
                 +++eAie y ++ al 
  CCD25410.1 270 KFDEAIEQYNKAWALN 285
                 599****998855555 PP

  == domain 4  score: 1.1 bits;  conditional E-value: 0.75
       TPR_7  11 rlGdyeeAielyeq 24 
                 + Gd+e+Ai  + +
  CCD25410.1 300 EKGDFETAIATLNE 313
                 57*******98766 PP

  == domain 5  score: 17.5 bits;  conditional E-value: 4.6e-06
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLal 28 
                 + +++++y++ Gd ++ i++y++sL  
  CCD25410.1 332 FARIGNAYHKKGDLKKSIDYYQKSLTE 358
                 5789*******************8843 PP

  == domain 6  score: 2.2 bits;  conditional E-value: 0.33
       TPR_7   9 ysrlGdyeeAielyeqsLaltkdpeda 35 
                 y+  Gd+ +A++ y +   + ++peda
  CCD25410.1 399 YFTKGDWPNAVKAYSE--MIKRAPEDA 423
                 5667**********99..888888886 PP

  == domain 7  score: -1.3 bits;  conditional E-value: 4.4
       TPR_7  11 rlGdyeeAielyeqsLal 28 
                 +  +y++A++ +e+  a 
  CCD25410.1 469 AIKEYANALDTLEE--AK 484
                 55689999999998..65 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.84   5.6e+02       9      31 ..      12      34 ..      12      35 .. 0.89
   2 !   11.2   0.0   0.00039      0.26       5      31 ..      43      69 ..      41      70 .. 0.93
   3 !   12.6   0.5   0.00014     0.093       5      30 ..      77     102 ..      76     103 .. 0.95
   4 ?   -1.1   0.1       2.9   1.9e+03      13      31 ..     266     284 ..     265     287 .. 0.80
   5 ?   -0.9   0.0       2.5   1.7e+03       3      23 ..     289     309 ..     288     316 .. 0.75
   6 !    8.2   0.0    0.0034       2.2       6      34 ..     333     361 ..     328     362 .. 0.86
   7 ?    1.4   0.0      0.46   3.1e+02       5      29 ..     426     450 ..     423     452 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.84
      TPR_10  9 analrqrgrydeAealleealai 31
                +na +  +++++A +l+ +a+++
  CCD25410.1 12 GNAAFTSKDFNKAIELFTKAIEV 34
                68888999************986 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00039
      TPR_10  5 lnNLanalrqrgrydeAealleealai 31
                ++N ++a+++ ++++eA++++ e++ i
  CCD25410.1 43 YSNRSAAYTSAKQFQEALNDATECVKI 69
                8999********************986 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 0.00014
      TPR_10   5 lnNLanalrqrgrydeAealleeala 30 
                 +n L++a + +g+++eAe+ ++eal 
  CCD25410.1  77 YNRLGAAEFGLGNLEEAEKNYKEALK 102
                 89**********************96 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 2.9
      TPR_10  13 rqrgrydeAealleealai 31 
                 ++  ++deA + + +a a+
  CCD25410.1 266 YKAHKFDEAIEQYNKAWAL 284
                 556689*****99999987 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 2.5
      TPR_10   3 sslnNLanalrqrgrydeAea 23 
                 + lnN ++a ++ g+++ A a
  CCD25410.1 289 TYLNNRSAAEFEKGDFETAIA 309
                 568999999999999887765 PP

  == domain 6  score: 8.2 bits;  conditional E-value: 0.0034
      TPR_10   6 nNLanalrqrgrydeAealleealairrr 34 
                   ++na+++ g+++++ ++++++l  +r 
  CCD25410.1 333 ARIGNAYHKKGDLKKSIDYYQKSLTEHRT 361
                 568*********************98875 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.46
      TPR_10   5 lnNLanalrqrgrydeAealleeal 29 
                 ++N a+al+++  + eA ++++ a+
  CCD25410.1 426 YSNRAAALSKLMSFPEAIKDCDNAI 450
                 89****************9999887 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       4.4   2.9e+03      30      62 ..       6      38 ..       4      47 .. 0.78
   2 ?    3.4   0.0      0.13        86       3      61 ..      48     106 ..      46     113 .. 0.87
   3 ?    1.8   0.0      0.41   2.8e+02      34      60 ..     293     319 ..     273     329 .. 0.84
   4 !   16.7   0.0   8.8e-06    0.0058       6      64 ..     400     460 ..     398     470 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 4.4
       TPR_9 30 eerrdRGlllaqlGclsaAladLeaylalapda 62
                +e+   G + + + ++++A++ +  +++++p +
  CCD25410.1  6 DEYKQQGNAAFTSKDFNKAIELFTKAIEVSPTP 38
                566666777777888999999999999999865 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.13
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalapd 61 
                 a++ +++++++al  +   + ++P     +   G +++ lG+l++A +    +l l+ +
  CCD25410.1  48 AAYTSAKQFQEALNDATECVKINPTWSKGYNRLGAAEFGLGNLEEAEKNYKEALKLDNN 106
                 5789999999****9999999999999999999*************9999998887765 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.41
       TPR_9  34 dRGlllaqlGclsaAladLeaylalap 60 
                  R  ++++ G++++A+a L+ ++++  
  CCD25410.1 293 NRSAAEFEKGDFETAIATLNEAVDQGR 319
                 566788899***********9999865 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 8.8e-06
       TPR_9   6 ireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap..dapd 64 
                   + dw+ a +++  ++  aP+d++ +  R+ +l +l  + +A++d + ++ ++p   ++ 
  CCD25410.1 400 FTKGDWPNAVKAYSEMIKRAPEDARGYSNRAAALSKLMSFPEAIKDCDNAIKKDPnfVRAY 460
                 6678**************************************************9663443 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.016        11      11     109 ..      15     103 ..      11     115 .. 0.65
   2 !    9.0   0.0    0.0012      0.82      48     108 ..     296     357 ..     271     368 .. 0.64
   3 ?   -0.3   0.0      0.83   5.5e+02      47      70 ..     396     419 ..     387     438 .. 0.78
   4 ?    4.3   0.7     0.033        22     210     300 ..     462     557 ..     444     562 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.016
    TPR_MalT  11 aiasgdaeralelArqALallpeddllariaatavlGeasllqGdleaAlqalqeaeklarqadslhvallallqqaeilvaqGrLheAletyeqalql 109
                 a++s d+++a+el  +A++ +p+ ++      +a+++ a + q+ l++A++  +   + +++++          +++  ++  G L+eA++ y++al+l
  CCD25410.1  15 AFTSKDFNKAIELFTKAIEVSPTPNHVLYSNRSAAYTSAKQFQEALNDATECVKINPTWSKGYN----------RLGAAEFGLGNLEEAEKNYKEALKL 103
                 6778888888888888888888888877777777777777777766666665544444443333..........3445556666666666666666665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0012
    TPR_MalT  48 easllqGdleaAlqalqeaeklarqa.dslhvallallqqaeilvaqGrLheAletyeqalq 108
                  a + +Gd+e A ++l+ea++  r+    +++ + ++ ++++ + ++G+L+++++ y+++l+
  CCD25410.1 296 AAEFEKGDFETAIATLNEAVDQGRELrADYKIIAKSFARIGNAYHKKGDLKKSIDYYQKSLT 357
                 45555666666666666666655443134555666666666666666666666666666654 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.83
    TPR_MalT  47 GeasllqGdleaAlqalqeaekla 70 
                 G  ++++Gd ++A++a++e++k a
  CCD25410.1 396 GKEYFTKGDWPNAVKAYSEMIKRA 419
                 788999999999*99999999876 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.033
    TPR_MalT 210 rlwlaqgdlaaaerwleaaelpsdddnhflelelrn.larvllalgryd.e...AlellerLlkaaeelgrvrslieiliLqalalqaqgreeeAl 300
                 r   aq  +++  ++l++ e+ +++d++++   + n ++r+++++ +++ +    +e+ e+ +k+a++   v + ++  ++q+++ qaq ++ + +
  CCD25410.1 462 RKATAQIAIKEYANALDTLEEAKSKDSSVNNGANSNeIMRLQMKATQERfQaptGNETPEETYKRAMQDPEVAAIMQDPVMQSILQQAQTNPAALQ 557
                 5555666677778889999999999999999999777******99877434233677****************99999999999888887776444 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.22   1.5e+02       7      31 ..      12      36 ..       7      37 .. 0.74
   2 ?    0.6   0.1       1.7   1.1e+03       2      20 ..      83     101 ..      79     103 .. 0.50
   3 ?   -0.5   0.1       3.8   2.6e+03      10      25 ..     266     280 ..     264     286 .. 0.81
   4 ?    3.4   0.0      0.21   1.4e+02      10      28 ..     298     316 ..     290     317 .. 0.83
   5 !    7.8   0.0    0.0085       5.7       5      28 ..     334     357 ..     330     360 .. 0.87
   6 ?    6.5   0.0     0.022        14      10      32 ..     399     421 ..     390     422 .. 0.84
   7 ?    3.8   0.3      0.16   1.1e+02       2      27 ..     459     484 ..     458     488 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.22
                HHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6  7 alsyrklgdtdkAlealerlikeYP 31
                + + +  +d  kA+e++ + i+  P
  CCD25410.1 12 GNAAFTSKDFNKAIELFTKAIEVSP 36
                4445543799*********998655 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.7
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAl 20 
                 A + l+ + ++ +++ +Al
  CCD25410.1  83 AEFGLGNLEEAEKNYKEAL 101
                 4455555555545555554 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 3.8
                 HHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealer 25 
                 y++  + d+A+e +++
  CCD25410.1 266 YKAH-KFDEAIEQYNK 280
                 6667.899***99987 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6  10 yrklgdtdkAlealerlik 28 
                  ++ gd ++A+++l++ ++
  CCD25410.1 298 EFEKGDFETAIATLNEAVD 316
                 56667**********9887 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0085
                 HHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   5 klalsyrklgdtdkAlealerlik 28 
                 +++ +y k gd  k+++++++ ++
  CCD25410.1 334 RIGNAYHKKGDLKKSIDYYQKSLT 357
                 89******99**********9665 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.022
                 HHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  10 yrklgdtdkAlealerlikeYPd 32 
                 y+  gd+ +A++a+ + ik+ P+
  CCD25410.1 399 YFTKGDWPNAVKAYSEMIKRAPE 421
                 55558***************996 PP

  == domain 7  score: 3.8 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerli 27 
                 A+ + a ++++ +++++Al++le+  
  CCD25410.1 459 AYIRKATAQIAIKEYANALDTLEEAK 484
                 6668899999988*********9876 PP

>> DUF3808  Protein of unknown function (DUF3808)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1     2e-06    0.0013     275     359 ..      11      92 ..       9     123 .. 0.78
   2 ?   -0.8   0.0      0.74   4.9e+02     248     296 ..     265     315 ..     247     323 .. 0.68
   3 ?   -2.5   0.1       2.4   1.6e+03     117     146 ..     329     357 ..     321     402 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 2e-06
     DUF3808 275 earieslkgnldeAlelleeiieesqselkqvkhlclfelaltlvylheykeaaesfleLlkls.kwSkalYtYlaaacllelgre 359
                 ++ + ++++++++A+el+ ++i    +     +h+++ +++ +++  ++++ea+++++e++k++ +wSk + +  aa + l + +e
  CCD25410.1  11 QGNAAFTSKDFNKAIELFTKAI----EVSPTPNHVLYSNRSAAYTSAKQFQEALNDATECVKINpTWSKGYNRLGAAEFGLGNLEE 92 
                 67888999***********999....44455689*****************************95699986655555555555544 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.74
     DUF3808 248 kapleeleelLlksrkrfP.ksalwll.fearieslkgnldeAlelleeii 296
                  ++ ++ +e++++++k++  +  +  l +++ +e+ kg++++A+++l+e++
  CCD25410.1 265 LYKAHKFDEAIEQYNKAWAlNKDITYLnNRSAAEFEKGDFETAIATLNEAV 315
                 555666677777777777633344444156778888888888888888877 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 2.4
     DUF3808 117 iKgglklRkaYqiykeilkeikklekkkrs 146
                 +K++ ++ +aY+   +++k i  ++k   +
  CCD25410.1 329 AKSFARIGNAYHKKGDLKKSIDYYQKSL-T 357
                 6777777777777666666666443322.2 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.1     0.002       1.3       3      81 ..      19      99 ..      10     100 .. 0.86
   2 ?    4.7   0.3     0.053        35      33      79 ..     265     311 ..     250     314 .. 0.68
   3 ?    1.5   2.4      0.52   3.4e+02      30      64 ..     295     330 ..     269     387 .. 0.62
   4 !    9.1   0.2    0.0023       1.5       3      81 ..     403     482 ..     388     483 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.002
                T-HHHHHHHHHHHH.HHH--HHHHHHH..HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  3 nnyknAiflaerllaaetespedayll..AlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81
                +++++Ai l+ ++    +  p+++++   + ++ +++q+++A++ + ++ k+n++  +    ++ + + L+++eeA++ +++
  CCD25410.1 19 KDFNKAIELFTKAI-EVSPTPNHVLYSnrSAAYTSAKQFQEALNDATECvKINPTWSKGYNRLGAAEFGLGNLEEAEKNYKE 99
                57899999999999.66667777666557999*****************999999999999999999999999999988765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.053
                 HHHTT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3  33 lylngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaaL 79 
                 ly++ ++++A+e ++ka+  +k++ ++     + ++ + +e Aia+L
  CCD25410.1 265 LYKAHKFDEAIEQYNKAWALNKDITYLNNRSAAEFEKGDFETAIATL 311
                 89999999999999999776666544433333334446666666665 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.52
                 HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHH CS
      ANAPC3  30 AlclylngqykrAyellrka.klnskslgcrylfAq 64 
                 + + ++ g++++A+  l++a ++  +  +   ++A+
  CCD25410.1 295 SAAEFEKGDFETAIATLNEAvDQGRELRADYKIIAK 330
                 555566777777777777774444443333334444 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.0023
                 T-HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3   3 nnyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 +++ nA+  ++ + ++ +e++      A +l ++  + +A++ +++a k++++  ++ + +A +++++k+y  A+++Le+
  CCD25410.1 403 GDWPNAVKAYSEMIKRAPEDARGYSNRAAALSKLMSFPEAIKDCDNAiKKDPNFVRAYIRKATAQIAIKEYANALDTLEE 482
                 567788888888884444444444444999999**************99999999***********************98 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0044       2.9      13      61 ..      30      79 ..      20      85 .. 0.80
   2 ?   -1.5   0.1       4.9   3.3e+03       4      44 ..     233     277 ..     229     288 .. 0.66
   3 ?    1.1   0.2      0.74   4.9e+02      20      55 ..     286     321 ..     268     338 .. 0.79
   4 ?   -1.9   0.0       6.8   4.5e+03      17      56 ..     384     423 ..     370     442 .. 0.61
   5 !   14.5   0.3   4.9e-05     0.032       7      65 ..     442     500 ..     436     506 .. 0.92

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0044
      TPR_20 13 aalaanpd.dldarldlAlallaagryeeAleqLleilkrdrkweddaar 61
                +a++ +p+ ++ +  + + a+ +a++ +eAl+   e +k + +w+++  r
  CCD25410.1 30 KAIEVSPTpNHVLYSNRSAAYTSAKQFQEALNDATECVKINPTWSKGYNR 79
                566666652455566899**************************998665 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 4.9
      TPR_20   4 dapelaeleaalaanpddldarldlAl....allaagryeeAleq 44 
                 +ape+ e++++ +++ ++ +++ d A+    +l++a + +eA+eq
  CCD25410.1 233 TAPEPMEVDEKEEDKESNSKLEADEAKvegnKLYKAHKFDEAIEQ 277
                 567777777777777777766666664212246777777777776 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.74
      TPR_20  20 ddldarldlAlallaagryeeAleqLleilkrdrkw 55 
                 +d+    + + a +++g+ e A++ L e + + r+ 
  CCD25410.1 286 KDITYLNNRSAAEFEKGDFETAIATLNEAVDQGREL 321
                 556666678899999***********9999988765 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 6.8
      TPR_20  17 anpddldarldlAlallaagryeeAleqLleilkrdrkwe 56 
                  +p+  + +    + ++ +g+   A+++  e++kr  +++
  CCD25410.1 384 IDPEKAEEARLEGKEYFTKGDWPNAVKAYSEMIKRAPEDA 423
                 4555555444556666666666667766666666665554 PP

  == domain 5  score: 14.5 bits;  conditional E-value: 4.9e-05
      TPR_20   7 elaeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkweddaarkqll 65 
                  +++ ++a++++p+ + a +  A+a++a ++y+ Al+ L e  ++d++ +++a  ++++
  CCD25410.1 442 AIKDCDNAIKKDPNFVRAYIRKATAQIAIKEYANALDTLEEAKSKDSSVNNGANSNEIM 500
                 5788899********************************************99877766 PP

>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       1.6   1.1e+03      21      30 ..      18      27 ..      17      32 .. 0.89
   2 ?    5.5   0.1     0.017        11      16      30 ..      55      69 ..      52      70 .. 0.92
   3 ?    2.2   0.0      0.18   1.2e+02      18      30 ..      91     103 ..      83     110 .. 0.86
   4 ?    3.7   0.1     0.064        43      14      27 ..     268     281 ..     267     285 .. 0.88
   5 ?   -1.9   0.0       3.5   2.3e+03      13      28 ..     300     315 ..     299     316 .. 0.82
   6 ?    0.7   0.0      0.57   3.8e+02      23      37 ..     344     358 ..     343     359 .. 0.87
   7 ?    0.5   0.0      0.63   4.2e+02      17      28 ..     439     450 ..     438     451 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.6
    SHNi-TPR 21 veDlrkaLeL 30
                ++D++ka+eL
  CCD25410.1 18 SKDFNKAIEL 27
                58*****998 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.017
    SHNi-TPR 16 nFpqAveDlrkaLeL 30
                +F +A+ D ++++++
  CCD25410.1 55 QFQEALNDATECVKI 69
                8************98 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.18
    SHNi-TPR  18 pqAveDlrkaLeL 30 
                 ++A +++++aL+L
  CCD25410.1  91 EEAEKNYKEALKL 103
                 7899*******99 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.064
    SHNi-TPR  14 nenFpqAveDlrka 27 
                 +++F++A+e ++ka
  CCD25410.1 268 AHKFDEAIEQYNKA 281
                 589********998 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 3.5
    SHNi-TPR  13 EnenFpqAveDlrkaL 28 
                 E + F++A+  l++a+
  CCD25410.1 300 EKGDFETAIATLNEAV 315
                 77779****9999998 PP

  == domain 6  score: 0.7 bits;  conditional E-value: 0.57
    SHNi-TPR  23 DlrkaLeLreqllpp 37 
                 Dl+k+++++++ l  
  CCD25410.1 344 DLKKSIDYYQKSLTE 358
                 9*********98865 PP

  == domain 7  score: 0.5 bits;  conditional E-value: 0.63
    SHNi-TPR  17 FpqAveDlrkaL 28 
                 Fp+A++D + a+
  CCD25410.1 439 FPEAIKDCDNAI 450
                 9******87775 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0094       6.2      16      34 ..      12      32 ..       7      33 .. 0.80
   2 ?    1.3   0.1       0.9     6e+02       4      35 ..      77     102 ..      74     105 .. 0.48
   3 ?    0.4   0.0       1.7   1.2e+03      21      33 ..     342     355 ..     336     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0094
        Sel1 16 Gl..gvpkDpekAiewyekAA 34
                G    + kD +kAie++ kA 
  CCD25410.1 12 GNaaFTSKDFNKAIELFTKAI 32
                55545889************7 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.9
        Sel1   4 myrLGmfylylnGlgvpkDpekAiewyekAAe 35 
                 ++rLG     ++Glg   + e+A++ y+ A +
  CCD25410.1  77 YNRLG-AA--EFGLG---NLEEAEKNYKEALK 102
                 56666.23..46663...44444444444444 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 1.7
        Sel1  21 k.DpekAiewyekA 33 
                 k D +k i +y+k+
  CCD25410.1 342 KgDLKKSIDYYQKS 355
                 55999*******96 PP

>> BTAD  Bacterial transcriptional activator domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.4   1.6e+03       8      33 ..       7      32 ..       4      34 .. 0.88
   2 ?    6.0   0.0     0.023        15      71     123 ..      49     101 ..      41     105 .. 0.88
   3 ?   -1.5   0.1       4.6     3e+03      15      35 ..     264     284 ..     253     298 .. 0.64
   4 ?    2.2   0.0      0.34   2.3e+02      10      34 ..     292     316 ..     285     320 .. 0.80
   5 ?    2.8   0.1      0.23   1.5e+02      15     109 ..     338     436 ..     324     451 .. 0.62
   6 ?   -0.0   0.1       1.7   1.1e+03      94     128 ..     455     482 ..     424     491 .. 0.55

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 2.4
                HHHHHHHHHHHTT-HHHHHHHHHHHH CS
        BTAD  8 alvaagraalaagdpeeaaelleaAl 33
                +++++g+aa    d+++a+el+ +A+
  CCD25410.1  7 EYKQQGNAAFTSKDFNKAIELFTKAI 32
                56899*****************9997 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.023
                 HHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
        BTAD  71 aelrlGraeealaelealvaehPlrErlhrqlmrAlarsGrqaeALevYerlr 123
                 a ++  + +eal ++++ v+ +P+  + +  l +A + +G+ +eA + Y+++ 
  CCD25410.1  49 AYTSAKQFQEALNDATECVKINPTWSKGYNRLGAAEFGLGNLEEAEKNYKEAL 101
                 5556667899***************************************9985 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 4.6
                 HHHHTT-HHHHHHHHHHHHTT CS
        BTAD  15 aalaagdpeeaaelleaAlal 35 
                 ++ +a +++ea+e++++A al
  CCD25410.1 264 KLYKAHKFDEAIEQYNKAWAL 284
                 555555555555555555444 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.34
                 HHHHHHHHHTT-HHHHHHHHHHHHT CS
        BTAD  10 vaagraalaagdpeeaaelleaAla 34 
                  ++++a+ ++gd+e+a++ l++A++
  CCD25410.1 292 NNRSAAEFEKGDFETAIATLNEAVD 316
                 5677888899999999999999976 PP

  == domain 5  score: 2.8 bits;  conditional E-value: 0.23
                 HHHHTT-HHHHHHHHHHHHTT--.SSTTGGGTT...STTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT CS
        BTAD  15 aalaagdpeeaaelleaAlalwr.Gpaladlea...gewleaererleelrlealealaeaelrlGraeealaelealvaehPlrErlhrqlmrAlars 109
                 a +++gd ++ ++ +++ l + r ++ l +l+    +   + + ++++ ++ e  +   ++ ++ G++ +a++ ++++++  P + r +    +Al ++
  CCD25410.1 338 AYHKKGDLKKSIDYYQKSLTEHRtADILTKLRNcekELKKQEAEQYIDPEKAEEARLEGKEYFTKGDWPNAVKAYSEMIKRAPEDARGYSNRAAALSKL 436
                 555666666666666666666653345555555432112222222233333333333334667789*****************9999999998888776 PP

  == domain 6  score: -0.0 bits;  conditional E-value: 1.7
                 T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
        BTAD  94 lrErlhrqlmrAlarsGrqaeALevYerlrrlLae 128
                           rA+ r    + A++ Y ++ ++L+e
  CCD25410.1 455 NFV-------RAYIRKATAQIAIKEYANALDTLEE 482
                 444.......4444444444444444444444443 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.58   3.8e+02       8      34 ..      47      73 ..      42      76 .. 0.84
   2 ?    4.7   0.5     0.048        32       8      38 ..      81     111 ..      79     112 .. 0.89
   3 ?    2.6   0.0      0.22   1.4e+02       8      34 ..     430     456 ..     428     459 .. 0.90
   4 ?   -0.5   0.1         2   1.3e+03       8      25 ..     464     481 ..     463     485 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.58
                HHHHHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  8 AlGhyklgeYseArryvdalLeiEPen 34
                + +++  ++++eA++ +  + +i P +
  CCD25410.1 47 SAAYTSAKQFQEALNDATECVKINPTW 73
                668888899999999999999999988 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.048
                 HHHHHHHT-HHHHHHHHHHHHHHTTS-HHHH CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvdalLeiEPenrQaq 38 
                   + + lg+ +eA +  +  L+++ +n+ a+
  CCD25410.1  81 GAAEFGLGNLEEAEKNYKEALKLDNNNNKAA 111
                 568899********************99886 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.22
                 HHHHHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvdalLeiEPen 34 
                 A +  kl  + eA + +d  ++++P++
  CCD25410.1 430 AAALSKLMSFPEAIKDCDNAIKKDPNF 456
                 778899*******************97 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 2
                 HHHHHHHT-HHHHHHHHH CS
  Fis1_TPR_C   8 AlGhyklgeYseArryvd 25 
                 A +++ ++eY +A+  ++
  CCD25410.1 464 ATAQIAIKEYANALDTLE 481
                 5677889******98776 PP

>> DnaI_N  Primosomal protein DnaI N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       7.9   5.2e+03      51      79 ..      50      77 ..      16      79 .. 0.76
   2 ?    8.1   0.2    0.0062       4.1      10      77 ..     264     330 ..     261     335 .. 0.91
   3 ?   -1.0   0.1       4.3   2.9e+03      28      69 ..     339     380 ..     324     408 .. 0.70
   4 ?    4.5   0.1     0.086        57      16      69 ..     438     492 ..     428     501 .. 0.69
   5 ?    4.3   0.2     0.095        63      14      49 ..     513     548 ..     498     569 .. 0.64

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 7.9
                HHTHHHHHHHHHS-SS-TTTTS--SSTTE CS
      DnaI_N 51 erslskLyeyveekkkceaeecknlakGY 79
                  s+++++e +++  +c +  +++  kGY
  CCD25410.1 50 YTSAKQFQEALNDATECVK-INPTWSKGY 77
                4567778888888888877.777778887 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0062
                 XXSXXXHHHHHHHHHHHHHTTXHHHHHHHHHSTTTC-HHHHHHTHHHHHHHHHS-SS-TTTTS--SST CS
      DnaI_N  10 kllkkrkfekryeklkeevlsdpeVqaFlqehqeelteeaierslskLyeyveekkkceaeecknlak 77 
                 kl k +kf++ +e+  ++   ++++  + ++  +e ++ ++e  +++L+e v++ ++ +a + k +ak
  CCD25410.1 264 KLYKAHKFDEAIEQYNKAWALNKDITYLNNRSAAEFEKGDFETAIATLNEAVDQGRELRA-DYKIIAK 330
                 678899************************************************999998.6666665 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 4.3
                 HTTXHHHHHHHHHSTTTC-HHHHHHTHHHHHHHHHS-SS-TT CS
      DnaI_N  28 vlsdpeVqaFlqehqeelteeaierslskLyeyveekkkcea 69 
                   ++ + ++ ++  q++lte+     l+kL +  +e kk ea
  CCD25410.1 339 YHKKGDLKKSIDYYQKSLTEHRTADILTKLRNCEKELKKQEA 380
                 555666666677777778888888888888777777777666 PP

  == domain 4  score: 4.5 bits;  conditional E-value: 0.086
                 HHHHHHHHHHHHHTTXHH.HHHHHHHSTTTC-HHHHHHTHHHHHHHHHS-SS-TT CS
      DnaI_N  16 kfekryeklkeevlsdpe.VqaFlqehqeelteeaierslskLyeyveekkkcea 69 
                 +f + +++  +++ +dp+ V+a++++  +++  +++ + l +L e +++   +++
  CCD25410.1 438 SFPEAIKDCDNAIKKDPNfVRAYIRKATAQIAIKEYANALDTLEEAKSKDSSVNN 492
                 4555666666777777765888888888888888888888888888888777777 PP

  == domain 5  score: 4.3 bits;  conditional E-value: 0.095
                 XXHHHHHHHHHHHHHTTXHHHHHHHHHSTTTC-HHH CS
      DnaI_N  14 krkfekryeklkeevlsdpeVqaFlqehqeelteea 49 
                  +  ++  e++++++++dpeV+a +q+   +   ++
  CCD25410.1 513 APTGNETPEETYKRAMQDPEVAAIMQDPVMQSILQQ 548
                 344456778888889999999999987654443444 PP

>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.67   4.5e+02      13      37 ..      15      39 ..      13      44 .. 0.74
   2 ?   -1.7   0.1       5.3   3.5e+03      13      27 ..     265     279 ..     263     284 .. 0.79
   3 ?   -2.1   0.0       7.1   4.7e+03      15      33 ..     300     318 ..     297     320 .. 0.82
   4 ?    6.4   0.0     0.016        10      13      32 ..     399     418 ..     397     421 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.67
       PPR_2 13 lckkgkveeAfklfneMkkrglePn 37
                 ++ +++++A++lf +  + + +Pn
  CCD25410.1 15 AFTSKDFNKAIELFTKAIEVSPTPN 39
                578899********87666655555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5.3
       PPR_2  13 lckkgkveeAfklfn 27 
                 l+k+ k++eA++ +n
  CCD25410.1 265 LYKAHKFDEAIEQYN 279
                 678889999988777 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 7.1
       PPR_2  15 kkgkveeAfklfneMkkrg 33 
                 +kg++e A+  +ne +++g
  CCD25410.1 300 EKGDFETAIATLNEAVDQG 318
                 799******9999976665 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.016
       PPR_2  13 lckkgkveeAfklfneMkkr 32 
                 +++kg++  A+k ++eM kr
  CCD25410.1 399 YFTKGDWPNAVKAYSEMIKR 418
                 99***************998 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       4.2   2.8e+03      14      25 ..      19      30 ..      16      33 .. 0.82
   2 ?   -2.1   0.0       9.4   6.3e+03       9      20 ..      49      60 ..      42      61 .. 0.87
   3 ?   -1.1   0.1       4.5     3e+03      14      21 ..      88      95 ..      77     103 .. 0.74
   4 ?    2.0   0.0      0.45     3e+02       8      25 ..     337     354 ..     335     357 .. 0.91
   5 ?    3.1   0.0       0.2   1.3e+02      11      29 ..     400     418 ..     398     418 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 4.2
         PPR 14 GkleeAlelfke 25
                 ++ +A+elf +
  CCD25410.1 19 KDFNKAIELFTK 30
                6899*****965 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 9.4
         PPR  9 gycknGkleeAl 20
                +y ++ +++eAl
  CCD25410.1 49 AYTSAKQFQEAL 60
                8999******98 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 4.5
         PPR 14 GkleeAle 21
                G+leeA++
  CCD25410.1 88 GNLEEAEK 95
                78888876 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.45
         PPR   8 sgycknGkleeAlelfke 25 
                 ++y k+G+l++ ++++++
  CCD25410.1 337 NAYHKKGDLKKSIDYYQK 354
                 799**********99976 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.2
         PPR  11 cknGkleeAlelfkeMkek 29 
                   +G++  A++ + eM+++
  CCD25410.1 400 FTKGDWPNAVKAYSEMIKR 418
                 5689************986 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.2   8.1e+02      43      72 ..      12      41 ..       4      47 .. 0.69
   2 ?    0.2   0.1       0.8   5.3e+02      14      64 ..      51     102 ..      39     111 .. 0.73
   3 ?    0.8   1.8      0.54   3.6e+02      17      62 ..     238     281 ..     222     290 .. 0.74
   4 ?    4.9   0.1     0.029        19      50     109 ..     302     362 ..     297     370 .. 0.71
   5 ?   10.2   0.4   0.00066      0.44      14      64 ..     366     417 ..     356     422 .. 0.88
   6 ?    0.4   0.0      0.68   4.5e+02      28      57 ..     422     451 ..     416     461 .. 0.86
   7 ?    3.5   0.4     0.079        52     111     145 ..     455     489 ..     426     504 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.2
                HHHHHHCT-HHHHHHHHHTCCCC--SHHHH CS
        RPN7 43 aehYlkigdleeAlkaysrireyctslkhk 72
                ++  ++  d+++A++++ +++e + +++h+
  CCD25410.1 12 GNAAFTSKDFNKAIELFTKAIEVSPTPNHV 41
                555566667777888888877777777776 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.8
                 HHHHHHHHHHHHHH.HTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCC CS
        RPN7  14 keleeLdaelkdak.enlgkeeirrakldlaehYlkigdleeAlkaysrire 64 
                    +++++ l+da     +     +++++l+   +  g+leeA k+y+++++
  CCD25410.1  51 TSAKQFQEALNDATeCVKINPTWSKGYNRLGAAEFGLGNLEEAEKNYKEALK 102
                 5567777777776634456666777888888888889999999999999865 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.54
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTC CS
        RPN7  17 eeLdaelkdakenlgkeeirrakldlaehYlkigdleeAlkaysri 62 
                  e d++ +d ke   k e  +ak +  + Y k+ +++eA++ y+++
  CCD25410.1 238 MEVDEKEED-KESNSKLEADEAKVEGNKLY-KAHKFDEAIEQYNKA 281
                 566666666.66667888888888866666.899**********96 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.029
                 T-HHHHHHHHHTCCCC--SHHHHHHHH.HHHHHHHHHTT-HHHHHHHHHHHHCSSS---.H CS
        RPN7  50 gdleeAlkaysrireyctslkhkidml.lnlirvaiffndwdlvskylekakellekggdw 109
                 gd+e A++++++++++   l +  +++  ++ r++ +++ ++ ++k ++  +++l +    
  CCD25410.1 302 GDFETAIATLNEAVDQGRELRADYKIIaKSFARIGNAYHKKGDLKKSIDYYQKSLTEHRTA 362
                 7888888888888888888877777652567888888888888888887777777665555 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00066
                 HHHHHHHHHHHHHH.HTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCC CS
        RPN7  14 keleeLdaelkdak.enlgkeeirrakldlaehYlkigdleeAlkaysrire 64 
                  +l   ++elk+ + e++++ e ++     ++ Y++ gd  +A+kays++++
  CCD25410.1 366 TKLRNCEKELKKQEaEQYIDPEKAEEARLEGKEYFTKGDWPNAVKAYSEMIK 417
                 56777799999999999********9999********************976 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.68
                 HTT-HHHHHHHHHHHHHHHHHCT-HHHHHH CS
        RPN7  28 enlgkeeirrakldlaehYlkigdleeAlk 57 
                 +  g ++ ++a  +l+ +   i d+++A+k
  CCD25410.1 422 DARGYSNRAAALSKLMSFPEAIKDCDNAIK 451
                 5567788899999***************98 PP

  == domain 7  score: 3.5 bits;  conditional E-value: 0.079
                 HHHHHHHHHHHHHHHTT-HHHHHHHHCTS-GGGT. CS
        RPN7 111 rknrlkvyeGlallairkfkeAaellldilstfts 145
                    r  + +++a++ai++++ A ++l +++s  +s
  CCD25410.1 455 NFVRAYIRKATAQIAIKEYANALDTLEEAKSKDSS 489
                 44567788999999999999999999888876655 PP

>> MAS20  MAS20 protein import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0017       1.1      80     112 ..      10      42 ..       7      48 .. 0.93
   2 ?   -0.7   0.0       2.1   1.4e+03      31      59 ..      92     120 ..      78     138 .. 0.57
   3 ?   -0.5   0.5       1.9   1.3e+03      25      63 ..     352     390 ..     344     414 .. 0.57
   4 ?   -0.8   0.9       2.3   1.5e+03      43      80 ..     488     529 ..     447     558 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0017
       MAS20  80 qlGEellaqgeeeeaaehlynAlkvcpqPqeLl 112
                 q+G+  +++++ ++a+e +++A+ v p+P+ +l
  CCD25410.1  10 QQGNAAFTSKDFNKAIELFTKAIEVSPTPNHVL 42 
                 78999999*********************9987 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 2.1
       MAS20  31 errkkqakaakeeeeaekaekkk.kealee 59 
                 e++k+ ++a k +++++ka++   + ++e+
  CCD25410.1  92 EAEKNYKEALKLDNNNNKAAQDGlD-QIER 120
                 4444444444444444444443332.2233 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.9
       MAS20  25 fkkklrerrkkqakaakeeeeaekaekkkkealeeakee 63 
                 ++k+l e r +   ++ ++ e+e ++++++++++ +k+e
  CCD25410.1 352 YQKSLTEHRTADILTKLRNCEKELKKQEAEQYIDPEKAE 390
                 666666666665555544444444444443333333332 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 2.3
       MAS20  43 eeeaekaekkk....kealeeakee..lptdaeevekfFleevq 80 
                 ++ ++ a++++    +  +++++e+   pt +e+ e+ + + +q
  CCD25410.1 488 SSVNNGANSNEimrlQ--MKATQERfqAPTGNETPEETYKRAMQ 529
                 1112222222233221..22222223344555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1597  (0.0890736); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.78u 0.25s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 3765.39
//
Query:       CCD25411.1  [L=352]
Description: hypothetical protein NDAI_0F00920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-07   31.6   0.3       0.13   11.6   0.0    3.1  3  WD40_like    WD40-like domain
    3.6e-06   27.2   0.5       0.51   10.7   0.0    4.6  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    3.9e-06   27.5   0.2    0.00081   20.2   0.0    3.4  2  WD40         WD domain, G-beta repeat
  ------ inclusion threshold ------
       0.02   14.8   0.1      0.034   14.0   0.1    1.4  1  eIF2A        Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00017      0.76      54      88 ..      27      61 ..       6      71 .. 0.82
   2 !    7.4   0.1   0.00054       2.4      92     182 ..      88     186 ..      80     191 .. 0.67
   3 !   11.6   0.0   2.9e-05      0.13       5      70 ..     269     334 ..     266     345 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00017
   WD40_like 54 dlilvvtlDGtillslleneeevenekieedistv 88
                 ++lv++ DGti+l+ l+ +ee e+ek ++++   
  CCD25411.1 27 RQLLVTSWDGTISLYHLSRGEEEEEEKAKDELRLL 61
                479*******************9**9999987665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00054
   WD40_like  92 ddklliGtnkGsiyv..fskdlqleevllgqsse..Ikeik..iennkiysLsesafiv.fdlfsqnieykisvkdiktfeii..enkdilligtegei 181
                 d  ++ Gt +G+i    f+ +  +e + ++  ++  I +++  ++n k+y  s + +i   d  s++i +ki ++d+k + ++  ++ ++++ +t+g+i
  CCD25411.1  88 DLTIYAGTIHGEIVQidFETN-RIEPIASNNDAQlgISKMIrsVKNKKLYVSSWDCLIQeLDPVSNQITKKIRLEDGKKVLSMdcNDDNLIIATTSGKI 185
                 556788888888877556666.66666666665422445431134777888888888753688888999999999888887776567777777778777 PP

   WD40_like 182 l 182
                 +
  CCD25411.1 186 K 186
                 6 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 2.9e-05
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilv.vtlDGtillsll 70 
                 ++ ++++++++  Gg d  + v +l+s++++  + +f++  + vk++ d+ +l+ +t D  + +  +
  CCD25411.1 269 TLSFDPHNNILYTGGSDGCVSVWNLDSQKKIKQFPKFNENSV-VKIVTDERMLCvATSDDSFKTNAV 334
                 566777888888888888899****************88533.799999977751678887766555 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.012        56      37      79 ..      13      55 ..       5      68 .. 0.82
   2 !    4.7   0.1    0.0085        38       2      88 ..      82     170 ..      81     174 .. 0.88
   3 ?    0.1   0.0      0.23     1e+03      28      77 ..     203     252 ..     171     265 .. 0.66
   4 !   10.7   0.0   0.00011      0.51      40      86 ..     266     312 ..     252     314 .. 0.90
   5 ?    1.2   0.0       0.1   4.6e+02      48      64 ..     315     331 ..     306     340 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.012
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvk 79
                 ++  ++++ + ++ + L v   dg+++l++ + g+  ++ ++k
   CCD25411.1 13 PKDYISDMIFMKEYRQLLVTSWDGTISLYHLSRGEEEEEEKAK 55
                 5667888889999999****************99977666655 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0085
  ANAPC4_WD40   2 swcptmDLiAla.tedgellvfRlngqrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  s+++ mDL  +a t +ge++   ++ +r+  + ++++ +  ++++  + ++k L v+  d  ++ ld  s ++ ++++ ++ k+v +++
   CCD25411.1  82 SYSDWMDLTIYAgTIHGEIVQIDFETNRIEPIaSNNDAQLGISKMIRSVKNKKLYVSSWDCLIQELDPVSNQITKKIRLEDGKKVLSMD 170
                  68999999766537799999999999999999777788899****************************************99999886 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.23
  ANAPC4_WD40  28 rvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhsls 77 
                   +wt  e++ + + r+++  +dg   + +  dg+v +   +++    +++
   CCD25411.1 203 GMWTEVEAGLKYQLRDIKLTNDGDGYVSSSIDGRVAVEYFNDESKKFAFR 252
                  45666677777888888888888888888888877665544444444444 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.00011
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                   v+ L++ p +++L  + sdg v++ +  s+k +++++  +e++v++
   CCD25411.1 266 PVNTLSFDPHNNILYTGGSDGCVSVWNLDSQKKIKQFPKFNENSVVK 312
                  5899********************************99877776665 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.1
  ANAPC4_WD40  48 pdgklLavaysdgevrl 64 
                   d+++L+va+sd + + 
   CCD25411.1 315 TDERMLCVATSDDSFKT 331
                  699********988765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.036   1.6e+02      23      37 ..      27      41 ..      11      42 .. 0.72
   2 !   20.2   0.0   1.8e-07   0.00081      12      38 .]     266     292 ..     248     292 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.036
                SEEEEEETTSEEEEE CS
        WD40 23 awlasGsdDgtvriW 37
                + l+  s+Dgt+ ++
  CCD25411.1 27 RQLLVTSWDGTISLY 41
                445557******987 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 1.8e-07
                 SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriWd 38 
                 +v+ l+f+p+++ l +G+ Dg v +W+
  CCD25411.1 266 PVNTLSFDPHNNILYTGGSDGCVSVWN 292
                 49***************88*******8 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   7.6e-06     0.034      97     169 ..     261     331 ..     238     336 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.6e-06
                 EEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT.--EEEE-TTSSEEEEEE-TTT-SS CS
       eIF2A  97 kleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaan.atlvewspdgryvlTattaprlrv 169
                 +    + Nt+ f+p+++++ ++G     G +++w+ ++ kki+++ ++n  ++v+  +d r++  at+  + ++
  CCD25411.1 261 MQFVFPVNTLSFDPHNNILYTGGS---DGCVSVWNLDSQKKIKQFPKFNeNSVVKIVTDERMLCVATSDDSFKT 331
                 5555689**************985...688**************977652788999999999998888766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2904.20
//
Query:       CCD25412.1  [L=482]
Description: hypothetical protein NDAI_0F00930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-31  108.7   0.0    2.9e-16   59.9   0.0    2.3  2  SIR2      Sir2 family
  ------ inclusion threshold ------
       0.16   12.2   2.3       0.65   10.3   0.1    2.4  2  Med21     Subunit 21 of Mediator complex


Domain annotation for each model (and alignments):
>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   3.2e-20   2.9e-16       1      93 [.      75     177 ..      75     183 .. 0.93
   2 !   46.5   0.0   4.3e-16   3.8e-12      94     175 ..     199     303 ..     192     305 .. 0.89

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 3.2e-20
                 -GGGGGGGT---SSSTTSHHHHSCHHH....HSSHHHHHHHHHHHHH....HHHHHHHHHHCC..TSS--HHHHHHHHHHHTTCEEEEEES-SSSHHHH CS
        SIR2   1 GAGiStesGipdfRskeGlyaklakee....laspealfskkllvee....vfyniarellae..eaepnaaHkalkklekkgkllrliTQNiDgLekk 89 
                 GAGiS ++Gipd   +  ly+ ++k+     ++s +++f+++l+++e    vf  ++++l+++   a+p+++Hk++++l++++kllr++TQNiDgLe+ 
  CCD25412.1  75 GAGISCNAGIPDLDHQMVLYESVKKQFpemsISSGKEMFDISLFRDElkisVFAAFMEKLYSNvkLAQPTKTHKFIAHLKNRNKLLRCYTQNIDGLEEI 173
                 9********************999986666799************9999999*******99988679******************************99 PP

                 TT-S CS
        SIR2  90 aGsk 93 
                  G++
  CCD25412.1 174 LGLE 177
                 8875 PP

  == domain 2  score: 46.5 bits;  conditional E-value: 4.3e-16
                 SEEETTEEEEEEEETTTSBEEECCGGHC.HHHCCTT.B-TTTCC.................BEEEEE--CTSB-S..HHHHHHHH.HHH..H-SEEEEE CS
        SIR2  94 kvvelHGslakakcvkcekkldkeelqe.eieaekvpecekcgk.................llkpdvvfFGealp..dklkklie.kve..eadlllvi 169
                  vv+lHG+l++++c++c +++ ++++ + ++++ ++p c++c++                 +l+p++v++Ge+ p  d +++ ++ +++  + d ++++
  CCD25412.1 199 DVVQLHGDLNSLACTRCYHNFPWSRYWArSLRNGQLPMCPECERknllrlkqgkrsndtvgVLRPNIVLYGENHPsgDIITQGLNlDLSrgKPDFFIIM 297
                 69*********************99865157899*********9******************************9877777777776652268****** PP

                 S--STS CS
        SIR2 170 GtSlkV 175
                 GtSlkV
  CCD25412.1 298 GTSLKV 303
                 *****9 PP

>> Med21  Subunit 21 of Mediator complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   7.2e-05      0.65      86     127 ..     353     393 ..     347     399 .. 0.90
   2 ?    1.2   0.2     0.046   4.1e+02      43      80 ..     443     480 ..     400     482 .] 0.68

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.2e-05
       Med21  86 IeyLIssLPgigsseeeqeerikeLeeelreveeereekvke 127
                 +eyL ++LP+   +++ q +ri++L++e  + +++r +  ke
  CCD25412.1 353 VEYLEEQLPDF-FKTQRQIDRIRQLKREASDLRKKRLQLKKE 393
                 6899999**99.8999*******************9988776 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.046
       Med21  43 psaapalakipqeekeepepdspeefaatqrelardli 80 
                  +++  + ++p ++ +e + ++++++++t++e+ r+l+
  CCD25412.1 443 LRKETPHIQTPGSKRKEASDETNADLENTLNEVTRTLL 480
                 22222223333566777788888889999999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1152  (0.0642534); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3459.67
//
Query:       CCD25413.1  [L=709]
Description: hypothetical protein NDAI_0F00940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       804  (0.0448435); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 5657.86
//
Query:       CCD25414.1  [L=171]
Description: hypothetical protein NDAI_0F00950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-44  151.4   1.7    6.1e-40  136.5   0.1    2.1  2  Allantoicase  Allantoicase repeat


Domain annotation for each model (and alignments):
>> Allantoicase  Allantoicase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.2   1.4e-06     0.025     131     144 .]       1      14 [.       1      14 [. 0.97
   2 !  136.5   0.1   3.4e-44   6.1e-40       1     144 []      37     170 ..      37     170 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-06
  Allantoicase 131 iyPDGGiarlrvyG 144
                   +yPDGGiar+++yG
    CCD25414.1   1 MYPDGGIARFKLYG 14 
                   8************9 PP

  == domain 2  score: 136.5 bits;  conditional E-value: 3.4e-44
  Allantoicase   1 GgkvlaasdeffaeaenllkpepargkmgdGWetrRrreegehdwviikLga.sgviegvevdtahFkgnappevsvealeleaseeeaeeeaelks 96 
                   G+ + ++sd++f++a+nll p++++ +m dGWet+R+r+++++dwviikLg  s+ i++v vdtah++gn+p+ ++v++++ e           +++
    CCD25414.1  37 GAVAWSYSDQHFGSADNLLLPGRGH-DMSDGWETKRSRSADHTDWVIIKLGRqSSYIQKVIVDTAHYRGNFPQYITVHGYHNE----------PTDN 122
                   788899*************666666.************999**********64889************************992..........2346 PP

  Allantoicase  97 eewkellpktklkpdkrhlfkveaeeklthvrlniyPDGGiarlrvyG 144
                   ++  el+ k k++pd++h++++e++ ++ +++l+i+PDGG++rlrv+G
    CCD25414.1 123 TDCVELVGKVKVGPDQEHVYNIERDVNIAYIKLTIIPDGGVKRLRVWG 170
                   789*****************99644499*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       234  (0.0130515); expected 358.6 (0.02)
Passed bias filter:                      205  (0.011434); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1338.50
//
Query:       CCD25415.1  [L=640]
Description: hypothetical protein NDAI_0F00960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   8.2e-174  578.5  40.8     1e-173  578.2  40.8    1.1  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami
  ------ inclusion threshold ------
       0.12   11.8   0.0       0.19   11.2   0.0    1.2  1  PNKP_ligase     PNKP adenylyltransferase domain, ligase domai


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  578.2  40.8  1.1e-177    1e-173       1     440 []     112     571 ..     112     571 .. 0.98

  Alignments for each domain:
  == domain 1  score: 578.2 bits;  conditional E-value: 1.1e-177
  Transp_cyt_pur   1 pvpeeeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvv 95 
                     pv+ e+R+w+++n++++Wl++++nintw+++a+gl+lgLnwwq++l++++g++++a fv+l++++G++y+l+fpi++RasfGi++s++p+++rvv
      CCD25415.1 112 PVEAERRVWSWYNYIYFWLADCFNINTWQVAATGLQLGLNWWQCWLTVWIGYFFAALFVVLNSRIGTAYHLSFPISVRASFGIFFSIWPIINRVV 206
                     89********************************************************************************************* PP

  Transp_cyt_pur  96 iaivwfgvqawiGsealllmlgkifgk..wleigg..ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkae 186
                     +aivw++vqaw+G+++++lml+ ifg+  + +i++  ++++++++++++ffifwvvs+++vl++++kir++f+i+a l+p+aafgfliwal+ka+
      CCD25415.1 207 MAIVWYAVQAWLGATPVSLMLKAIFGNnlEERIPNhfGSPNATTYDFMCFFIFWVVSVPFVLVAPHKIRHLFTIKACLIPFAAFGFLIWALKKAN 301
                     ***************************9999**************************************************************** PP

  Transp_cyt_pur 187 g....Gpvldkavklgkse...lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldi 274
                     g    G+++  ++ ++ se   +f++++++++a+fa+li+napDF+r+a+t++ss+++qlva+pl+f++++ligi+v+aa++ +yg n+wspld+
      CCD25415.1 302 GnialGTLN--GSTPHGSEfswVFVRSLMACIANFAALIINAPDFARFARTPESSLWTQLVAIPLFFAITCLIGIIVTAAGYELYGINYWSPLDV 394
                     *99555555..57788888899************************************************************************* PP

  Transp_cyt_pur 275 lakfdet.......agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavflspv 362
                     l++f++t       agv+li++++alaqlg+nisan+ls+g+d++a++P++ini+rg+l++  +al+i+pw+  +sssk ft++ls++avfls++
      CCD25415.1 395 LNQFLDTtytsgtrAGVFLIAFVFALAQLGTNISANSLSCGTDMTAIFPRYINIRRGALFCVCMALCICPWNFFASSSK-FTSALSAYAVFLSSI 488
                     *******************************************************************************.*************** PP

  Transp_cyt_pur 363 agviiadyfvvrrgylklaalytrrrgsaYwy..rkgvNwravaayivGiaaglvgvagsvg...ikvvkgaeklfdlsylvG 440
                     ag+i+ dy+vvrrgy+kl++l+ ++rgs+Y++  ++g+Nwra++ay++G+a++l+g++g+vg   ++v++ga++ ++lsy vG
      CCD25415.1 489 AGIICGDYYVVRRGYIKLNHLFLSQRGSYYMFgnKFGINWRALVAYLCGVAPNLPGFIGDVGaptVTVSEGAMRIYYLSYPVG 571
                     **********************************************************************************9 PP

>> PNKP_ligase  PNKP adenylyltransferase domain, ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.1e-05      0.19      83     155 ..      45     115 ..      24     121 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.1e-05
                  SS-SEEEEETTSSBSBSSHHHHHHHHHHHHHHHHHHTHHHHCT-SEEEEEEEEEECCHHHHHHHHHHHHHHHH CS
  PNKP_ligase  83 deeaGavytRtGRaffddkeleeellerlraalekaglweeldtdwlllDaellPWsakaeellreqyaavga 155
                  ++ +  +  R G + ++d+  +++  ++++++l+ +++we+++ ++++lD e l  s+k + l +++  +v a
   CCD25415.1  45 EDVVEKIPNRVGTREYSDSLSSDD--TNITDVLQYKSIWEKFHHEYIVLDKETLDVSLKDSFLYNRDLKPVEA 115
                  455666777877666666444443..578899999************************99998888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4718.50
//
Query:       CCD25416.1  [L=432]
Description: hypothetical protein NDAI_0F00970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-36  125.8   0.0      3e-35  122.2   0.0    2.0  1  Amidohydro_1  Amidohydrolase family
    3.8e-09   36.5   0.0    0.00022   20.9   0.0    2.3  2  Amidohydro_3  Amidohydrolase family
  ------ inclusion threshold ------
       0.18   11.3   0.0        0.3   10.6   0.0    1.2  1  FAM83         FAM83 A-H


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   0.0     5e-39     3e-35       1     319 [.      65     426 ..      65     431 .. 0.84

  Alignments for each domain:
  == domain 1  score: 122.2 bits;  conditional E-value: 5e-39
                   EEEE-EEEEEEECETTECSSSGHHHHHSTTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTH......HHHHHHHHHHT.SSSEEEEEEESSEGGSGC CS
  Amidohydro_1   1 ivlPGlIDaHvHleqsllrgatledwlvppetaaealesgiktalksGtttvadmgattst......giealleaaee.lplglrilggkvsldrgs 90 
                   i++PGl+D+HvHl+             +p++t +e++++g+++a+++G+ttv+dm+ ++++      +++  l+aa+  l+++++++gg       +
    CCD25416.1  65 IIMPGLVDSHVHLN-------------EPGRTEWEGFATGTQAAISGGVTTVIDMPLNAVPptttlhNLNKKLQAADGqLWCDVGFWGG------LV 142
                   79***********8.............*************************************999**********************......99 PP

                   CCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHHTTEEEEEE.TSSCHHHHHHHHHHTTTEEEETTTTSTCC..... CS
  Amidohydro_1  91 aetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkrdlpvaiHa.letkgevedaeaafgetiehgthlevaes..... 181
                   +++ +++   +kag++ ++ +  +++v+      e  ++ +e++ +a++  + +++++++Ha  e+++e   +++  +++  ++ + ++ es     
    CCD25416.1 143 PDNLEDLLPLVKAGVRGFKGFLIHSGVD------EFLSIDEEYINKAMDILANEKTMLMFHAeMEDPKEE--VVNPPKSDSNDKDIYSG-ESgknem 230
                   9*************97777766555555......89**************************86666663..44444444444344444.2356999 PP

                   ............................HHTTTHCCEE..........EHCTCEEEHHHHHHHHHHHHHHCEE.........HHHHHHHH....... CS
  Amidohydro_1 182 ............................lglldeikli..........lahgvhltpteaellkerlkeagva.........hcpfsnsi....... 224
                                                                    +h vhl  +ea  l+  + +++++         +c +++ i       
    CCD25416.1 231 apknyqnflnsrpdsfetdaikllircmE--------EgkkkingiipPVHVVHLASNEALPLIMEAHKSKLPltaetcfhyLCLAAENIpdsathf 319
                   99************666666666665551........044444555667999999999*******99***************9999**99******* PP

                   .......SEHHHHHHHHHHHHTSCEEEEEECT.........TSSCCGGHHHH..HHHHHHHHHHCCTTTTHCHCHHHHHHHHHTHHHHHHTT-TTTS CS
  Amidohydro_1 225 .......lrsgrealrkaldeGvkvglgtDga.........asgnslnllee..lrlalklqrgllyedeegglslkealrmaTingAkalglddkv 303
                           + +r+al+ al++Gv+ ++++D+            g+ l   +   ++  + l  +lly   + g s++e+ ++++ n+ k++g+ d +
    CCD25416.1 320 kccppirNEANRIALWTALKRGVITSVVSDHSpctpelkgfEEGDFL---RAwgGIASVGLGLPLLY---TNGASILEITKWCCENTSKQVGFQDFK 410
                   ******************************88888888555333333...33444444445556666...889************************ PP

                   SSS-TTSB--EEEECC CS
  Amidohydro_1 304 GsievGkdADlvvvdl 319
                   G+i+vG+dADlvv+++
    CCD25416.1 411 GKIAVGYDADLVVFNP 426
                   **************54 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   6.7e-06      0.04       8      47 ..      64     103 ..      63     116 .. 0.73
   2 !   20.9   0.0   3.6e-08   0.00022     408     447 ..     387     426 ..     332     431 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.7e-06
  Amidohydro_3   8 rlvlPGFvDsHtHlaggg.vnlrllrlpdarvtslegvlta 47 
                   r+ +PG+vDsH Hl + g  ++ ++  +  ++  + gv+t+
    CCD25416.1  64 RIIMPGLVDSHVHLNEPGrTEWEGFATGT-QAAISGGVTTV 103
                   578*************9955554444443.35555555555 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 3.6e-08
  Amidohydro_3 408 lsleealalyTrgpAkalgledrkGtLevGadADlvvlda 447
                    s+ e+ + + +++ k++g +d kG ++vG+dADlvv++ 
    CCD25416.1 387 ASILEITKWCCENTSKQVGFQDFKGKIAVGYDADLVVFNP 426
                   68899999999***************************95 PP

>> FAM83  FAM83 A-H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     5e-05       0.3      24     139 ..     152     264 ..     148     272 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 5e-05
       FAM83  24 LlekGeeafkevlkeeklrdFLseeelerilesaekeeyeeeeeeeeeeeeeeessvsltYwPeqsdtevPeldlgWp.eeaslkgvtrvtvytqppke 121
                 L++ G + fk +l ++++ +FLs +e e+i++++  +  ++e++    ++e e+++  +   P +sd++  ++  g + ++++  +  +  +  +p++ 
  CCD25416.1 152 LVKAGVRGFKGFLIHSGVDEFLSIDE-EYINKAM--DILANEKTMLMFHAEMEDPK-EEVVNPPKSDSNDKDIYSGESgKNEMAPKNYQNFLNSRPDSF 246
                 89*********************998.89**999..44444444445555666665.77889*******999999998566666666666667777788 PP

       FAM83 122 kaphikevvrkliqkaqk 139
                 ++  ik ++r + +  +k
  CCD25416.1 247 ETDAIKLLIRCMEEGKKK 264
                 999999999987665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       300  (0.0167327); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3333.73
//
Query:       CCD25417.1  [L=247]
Description: hypothetical protein NDAI_0F00980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-08   32.8   0.0    6.9e-08   32.6   0.0    1.2  1  Asp_Glu_race  Asp/Glu/Hydantoin racemase


Domain annotation for each model (and alignments):
>> Asp_Glu_race  Asp/Glu/Hydantoin racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   3.9e-12   6.9e-08      55     216 ..      67     231 ..       6     239 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.9e-12
                   HHHHHHHHHHHHCTTESEEEE--CHHHHHHHHHH.....HH-SSEEEECHHHHHHHHHHHSS-EEEEEE-HHHHHCTHHHHHHHHHGT.EEE....T CS
  Asp_Glu_race  55 vlklleaakkLekagadaiviaCnTahavadelq.....kkikiPvlgiveataealkatgvkkvglLgTrgtlksglyqkeleanqgievvvpsee 146
                   +++l e   k   ++ + i++aC++ h ++ el      ++ ++P++g++  +++ +   ++k++ +++ ++    ++  k +e+n  +  +++s +
    CCD25417.1  67 LPYLIEPESKYYYQKFHGILVACFSDHPLVHELInfaskAEYDVPIIGLLNSSIQYCTLLENKNFSIIT-SNKEWVDILNKSVEEN--F--ITESIK 158
                   446666666666677899*************9998999999***************************9.6666667778888886..4..688889 PP

                   -CCCHHCCHCHHHH.TT-TTSHHHHHHHHHHH..HHHTTT-SEEEE-STTHHHHHHHHHHCC-TT.SEEEEHH CS
  Asp_Glu_race 147 lqssvnqaiyeelk.aGevteearrailklle..rlaergadaviLGCTelplllekaealekeksvpvidpt 216
                    q+  + +i++el   +   +  ++ i+++++  ++ + + + +iLGC  ++ l ++++a  k++++++id+ 
    CCD25417.1 159 KQQLWRGTISTELQvLDLHSKCNYQGIINIIKseNIERLKSKIIILGCAAFSSLTNDLTATFKQDNIEFIDTI 231
                   99999999**999977777777999****99965555899999********************99******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1719.12
//
Query:       CCD25418.1  [L=554]
Description: hypothetical protein NDAI_0F00990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-216  719.9   0.0   1.6e-216  719.7   0.0    1.0  1  Malate_synthase  Malate synthase
  ------ inclusion threshold ------
      0.032   13.4   0.0      0.062   12.4   0.0    1.5  1  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family
        0.1   12.6   0.0       0.27   11.3   0.0    1.7  1  DUF1870          Domain of unknown function (DUF1870)


Domain annotation for each model (and alignments):
>> Malate_synthase  Malate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  719.7   0.0  2.6e-220  1.6e-216       8     526 .]      24     541 ..      20     541 .. 0.98

  Alignments for each domain:
  == domain 1  score: 719.7 bits;  conditional E-value: 2.6e-220
                      THHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH.HSHHHCCTCCCH-TSS---S-EECCCCE-TCCCCCCC-CCHCCCCCCC CS
  Malate_synthase   8 vleaaeilteealefvaelvrdltprrrelLeeRdelqaeidkge.lndflketkylreepewktatlhielqdrrveiiGkadrkmiinalne 100
                      +++ a+ilt++alef++ l+r+++ +r elL++R+ +q e+++ e + dfl+et+++r++p+w+ a  +++l +r+ ei+G+  r+m++naln+
       CCD25418.1  24 KTTIADILTKDALEFIVLLHRTFNSKRIELLKNRELIQSELNSNEyQFDFLPETQKIRDDPTWQGAIPAPGLINRSSEITGPPLRNMLVNALNS 117
                      56789****************************************666********************************************** PP

                      SSSEEEEESSTTS--HHHHHHCCHHCCCHCCTTT-EEEET-TSEEEEETTSESSSSEEEEE---TTTEEEEEECTTCEEEHHHHHHHHHHHHHH CS
  Malate_synthase 101 saittiaDfEDsvapnwenlvkGqlnledavrgrisfrkenkdksYklndglegrsllfvRnrGwhltekhilvdGeeisegilDfgliffhna 194
                      +++t+++DfEDs++p+wen+++Gq+nl+da+r++i+f +   +k+Ykl+d+ +++++++vR+rGwh+ ekh++vd+e+is++i+Dfgl+f+hna
       CCD25418.1 118 EVNTYMVDFEDSSSPTWENMIYGQVNLYDAIRNQIDFITP--RKQYKLKDHISKLPTIIVRPRGWHMVEKHLYVDDEPISASIFDFGLFFYHNA 209
                      **************************************98..9*************************************************** PP

                      HHCSCCTTSSEEEEE-S-SSHHHHHHHHHHHHHHHHHCTSSTTSCEEEEEE-SHHHHTTHHHHHHCTTTTEEEEEE-CHHHHHHHHHHTCCCCG CS
  Malate_synthase 195 kelklsrgggpyivlPKmegpqEaalwnevFsraedllglprgtikatvliEtlraslnldeiiyelrdrvaglNcGrlDyifseiktlreagd 288
                      kel ++ g gpy++lPKme++ E++lwn++F++a+d++g++rgti+atvliEtl+a+++++eiiy++r++++glNcGr+Dyifs+ik+lr++++
       CCD25418.1 210 KEL-IEIGRGPYFYLPKMEHHLEVKLWNDIFCVAQDYIGMKRGTIRATVLIETLPAAFQMEEIIYQIRQHSSGLNCGRWDYIFSTIKKLRNKSE 302
                      ***.****************************************************************************************** PP

                      CB...CGGGGCCSHHHHHHHHHHHHHHHHTT.CCCCCCCTCSEECCCEHHHCCCHHHHHHHCHHHHHCT-SEEEESSHHHHHHHHHHHHHCHCH CS
  Malate_synthase 289 mvLPdRkavtktapfikaYekllvktchkrgvhamgGlaakipikkdmeaneellekvredKlrevraGadgaWvahPtlatlaaevfeevdva 382
                      +vLP+R +vt+t+pf++aY+k+l++tch+rgvhamgG+aa+ipik+d+ an++++ekv +dK re+++G+dg+WvahP+la++++evf++ + +
       CCD25418.1 303 HVLPNRDQVTMTSPFMDAYVKRLINTCHRRGVHAMGGMAAQIPIKDDPIANAKAMEKVHNDKWREMTNGHDGSWVAHPALAPICNEVFSN-MGT 395
                      *****************************************************************************************9.778 PP

                      CHHCCHHTTTHHHHHHHHCS..--BBHHHHHHHHHHHHHHHHHHHHHHCT-SSEEETTEEESHHHHHHHHHHHHHHHHTTSC-CCHSHCHHHHH CS
  Malate_synthase 383 pnQielakeevritaddLlt.kipeaeeteeglrnnvqvglqYvvaWlrgvGcvpiihLmEDaATaeiSrqqlaqWirhgvvlkeqgvkvslel 475
                      +nQi    e v+i a+dLl+  i  ae t++g+r n+++glqY++aWlrg+Gcvpi+hLmEDaATae+Sr+ql+qW++h+v+lk++g+ ++ +l
       CCD25418.1 396 ANQIYRIPE-VTIVAKDLLNtDIKGAEVTTKGIRDNLDIGLQYMEAWLRGSGCVPINHLMEDAATAEVSRCQLYQWVKHNVILKDTGKPITSDL 488
                      ******998.8********9889999******************************************************************** PP

                      HHHHHHHHCCHHHHHHH..CCTTHHHCHHHHHHHHHTTTCCC-CHHHHHCCHH CS
  Malate_synthase 476 maklvdeenarleelgk..edeayreaakllkkeataeefadfltlkaykeli 526
                      +++++ ee+++l++ ++   ++++  aak++ +e+t+e f+dflt+++y+e+i
       CCD25418.1 489 TSTILAEEVEKLSASSPvgVANKFSLAAKYFLPEITGEIFSDFLTTLLYDEII 541
                      *************99998899*****************************996 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     1e-05     0.062      88     207 ..     221     356 ..     210     380 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1e-05
                 EEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHH..TSTTEEEEEE-HHHHHHHTT-TTSTTSHHHH.............. CS
   HpcH_HpaI  88 vlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIa..avegldgvflGaeDlsadlgtkrspegtevl.............. 170
                 + +Pk e   e++    ++  +++ i+ + +++r  + iE+  +  ++eeI+    +   g+  G  D+  +   k  ++ ++vl              
  CCD25418.1 221 FYLPKMEHHLEVKLWNDIFCVAQDYIGMKRGTIRATVLIETLPAAFQMEEIIyqIRQHSSGLNCGRWDYIFSTIKKLRNKSEHVLpnrdqvtmtspfmd 319
                 679*************************************************95556789*********988666666677778779999999999997 PP

                 HHHHHHHHTTHCEEEEEEE.E-SSHHHHHHHHHTTHC CS
   HpcH_HpaI 171 dareriltaaraagiaaldtvasdiddaegflaegal 207
                 +  +r++ ++   g++a++++a++i  ++  +a+++ 
  CCD25418.1 320 AYVKRLINTCHRRGVHAMGGMAAQIPIKDDPIANAKA 356
                 6678999999999999999998887766666655555 PP

>> DUF1870  Domain of unknown function (DUF1870)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   4.6e-05      0.27      17      70 ..     116     171 ..     105     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.6e-05
                 HHHHHHHTSS..S--HHHHHHHHTTSS---HHHHHHHHHHHHHHHHHHHHHHHHHC CS
     DUF1870  17 veeaaeyigk..avdsatWknWesgalpipdeivaelkelkklrkkkieeivekln 70 
                  +e  +y+++  +++s tW+n   g++ + d i +++  ++ +++ k++  + kl+
  CCD25418.1 116 NSEVNTYMVDfeDSSSPTWENMIYGQVNLYDAIRNQIDFITPRKQYKLKDHISKLP 171
                 468999999622556679*******************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 4139.08
//
Query:       CCD25419.1  [L=198]
Description: hypothetical protein NDAI_0F01000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-47  162.2   0.0    1.2e-47  162.1   0.0    1.0  1  Ureidogly_lyase  Ureidoglycolate lyase


Domain annotation for each model (and alignments):
>> Ureidogly_lyase  Ureidoglycolate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.1   0.0   6.8e-52   1.2e-47       3     182 ..       4     191 ..       2     197 .. 0.88

  Alignments for each domain:
  == domain 1  score: 162.1 bits;  conditional E-value: 6.8e-52
  Ureidogly_lyase   3 rikiepLtkeaFapFGdvieapeeakkappesvaiNqgtalkyhdlaelenayspskkearavislfrcaprelpake....ekklldvkilEr 92 
                      r+++ pLt e F+p+G++i++ ee +k  ++ +++Nqgta+k+ +++++e++     +++ ++++lfrc+ + + +++    ++  +++ +lE+
       CCD25419.1   4 RVNAIPLTIEGFKPYGSIISPGEEVTKLGSNYINANQGTAIKLGQVSQIETTS----ENKVPNWNLFRCFVQPHLKTQfppkKTIGHSIIVLEK 93 
                      68899*********************99***********************98....99**********877777666798788889******* PP

  Ureidogly_lyase  93 HpftsQtFvPlglsskekaylvvVAptlk...rglpdlkklraFvakgaqaVtygagvWHaplvvlg.dkpidFvvvq...adrvaee...dce 176
                      Hp +sQtF+P+g+ss++ +yl+vVA  ++   +g+p l++l+aF +kg+qaVtyg+gvWHap++++g ++++dF v++    d +  +   dc 
       CCD25419.1  94 HPESSQTFIPIGQSSEKVTYLIVVALPNRhtsEGSPLLNTLKAFKCKGNQAVTYGRGVWHAPMIAVGtQEYVDFGVLIyetLDPQ--KpelDCI 185
                      *************99888*******955445589999******************************9999*****996543333..2358999 PP

  Ureidogly_lyase 177 evllee 182
                      ev + +
       CCD25419.1 186 EVSYVP 191
                      988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       307  (0.0171231); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1576.88
//
Query:       CCD25420.1  [L=106]
Description: hypothetical protein NDAI_0F01010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-28   96.1   0.2      1e-27   96.0   0.2    1.0  1  Cpn10     Chaperonin 10 Kd subunit


Domain annotation for each model (and alignments):
>> Cpn10  Chaperonin 10 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.2   5.9e-32     1e-27       2      93 .]      11     103 ..      10     103 .. 0.98

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 5.9e-32
                 -EE-TTEEEEEESGG-TTS-TT----HHHHHSEEEEEEEEE-T........TS-TTS--T-EEEEEGGGTSS-GG.---.EEEEEGGG--EE- CS
       Cpn10   2 ikplgdrVlvkraeeeekteggiilpdsakekpeqGvVvaVGegarnekgedvplevkvgdkVlfpkyagtkvkv.dgkeylilkekdIlavi 93 
                 i pl drVlv+r ++e kt++gi+lp+++ +k +q++V aVG+g ++ +g++v ++vkvgd+Vl p+++g+ +k+ d++e +++++++Ila+i
  CCD25420.1  11 IVPLMDRVLVQRIKAEAKTASGILLPEKNVAKLNQAQVLAVGPGFTDANGNKVLPQVKVGDQVLIPQFGGSAIKLkDDEEVVLFRDSEILAKI 103
                 88*************************************************************************99**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       259  (0.0144459); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 912.36
//
Query:       CCD25421.1  [L=169]
Description: hypothetical protein NDAI_0F01020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.077   13.0   0.0       0.12   12.4   0.0    1.6  1  DUF4537   Domain of unknown function (DUF4537)
       0.15   12.4   0.1       0.91    9.9   0.1    2.1  1  SH3_15    Mind bomb SH3 repeat domain


Domain annotation for each model (and alignments):
>> DUF4537  Domain of unknown function (DUF4537)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05      0.12      36      83 ..       7      76 ..       1     138 [. 0.73

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
     DUF4537 36 etqeveerdiiale.dakehslkvgDkVLAlhdpeeqe.........YvPGiVlagp............s 83
                ++ + ++r+ i ++ + +    kvgD VL+ +d ++ +         Y+P +++++             +
  CCD25421.1  7 NMADAQDRQSIHFNeHHRVTNFKVGDSVLVHKDAYNNKpftkfhhlwYGPFKIIETLgdqtyrlnsqlgN 76
                444555566666661555999**********9999999999999******99998774444444433333 PP

>> SH3_15  Mind bomb SH3 repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1    0.0001      0.91       1      28 [.      28      55 ..      28     137 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0001
      SH3_15  1 fevGDwVrvkddvekvkklqeghggWsg 28
                f+vGD V v +d  + k++ + h+ W g
  CCD25421.1 28 FKVGDSVLVHKDAYNNKPFTKFHHLWYG 55
                9**********77777777777774432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 1389.15
//
Query:       CCD25422.1  [L=689]
Description: hypothetical protein NDAI_0F01030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1837  (0.10246); expected 358.6 (0.02)
Passed bias filter:                      289  (0.0161191); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 4839.59
//
Query:       CCD25423.1  [L=138]
Description: hypothetical protein NDAI_0F01040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-09   38.2   0.0      2e-09   37.7   0.0    1.3  1  Acetyltransf_1   Acetyltransferase (GNAT) family
    5.5e-07   29.6   0.2    7.8e-07   29.1   0.2    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
    2.4e-05   24.2   0.1    4.5e-05   23.3   0.0    1.5  2  FR47             FR47-like protein
    0.00069   19.7   0.0     0.0011   19.0   0.0    1.3  1  Acetyltransf_9   Acetyltransferase (GNAT) domain
    0.00087   19.7   0.0     0.0014   19.0   0.0    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
     0.0039   16.7   0.2     0.0045   16.5   0.2    1.3  1  Acetyltransf_15  Putative acetyl-transferase
  ------ inclusion threshold ------
       0.03   14.4   0.6      0.086   12.9   0.3    1.8  2  HTH_16           Helix-turn-helix domain
      0.048   13.8   0.0      0.099   12.8   0.0    1.5  1  Acetyltransf_CG  GCN5-related N-acetyl-transferase


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0     9e-13     2e-09      56     113 ..       9      67 ..       1      72 [. 0.88

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 9e-13
                     TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHT.TESEEEEEEETTEHHHHHHHH CS
  Acetyltransf_1  56 ekggvayieslaVspeyrgkGlGsaLlealeeraree.gikkivlaveedndaairlYe 113
                      + ++++i sl V ++yr++G++ +L+++++  +re   ++ + l+v+++n+aa +lY+
      CCD25423.1   9 KEAPNGHITSLSVMRTYRRMGIAEKLMRQALFALREVyKAEFVSLHVRKSNRAALHLYR 67 
                     456889**************************99999888999***************5 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.2   3.5e-10   7.8e-07      51     126 ..      13      94 ..       7      95 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 3.5e-10
  Acetyltransf_10  51 gshisllfVdpeyrgqGigkaLleaveeeaekdgikl..eltvnasp.yavpfYe.klGFkav..geeqeenGirfvpMeke 126
                      ++hi+ l V + yr+ Gi+++L+ +++ ++++   ++  +l+v++s+ +a  +Y+ +l F+++  ++  +++G   + M+k 
       CCD25423.1  13 NGHITSLSVMRTYRRMGIAEKLMRQALFALREVYKAEfvSLHVRKSNrAALHLYRdTLEFEVLsiESSYYQDGEDAYAMKKV 94 
                      56***************************9888887789********9******8469***998899999999999999986 PP

>> FR47  FR47-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0     2e-08   4.5e-05      20      79 ..      12      74 ..       7      82 .. 0.88
   2 ?   -2.7   0.0       2.6   5.9e+03      45      59 ..     123     137 ..     120     138 .] 0.74

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 2e-08
                TTSSEEEEEE-GGG-SSSHHHHHHHHHHHHHHH..S-S-EEEEEETT-HHHHHHHH.HHT-EE CS
        FR47 20 dggelgalqvlpehrrrGlgsrlvkalakeiae..rgktvllvvvasNtpsirlye.klGfek 79
                + g + +l v  + rr+G + +l ++   +++e  + + v+l+v+ sN ++ +ly   l fe+
  CCD25423.1 12 PNGHITSLSVMRTYRRMGIAEKLMRQALFALREvyKAEFVSLHVRKSNRAALHLYRdTLEFEV 74
                6799***************************99989999****************62466665 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.6
                 HHHHHHHHS-S-EEE CS
        FR47  45 alakeiaergktvll 59 
                  l ++i+++g++ ++
  CCD25423.1 123 DLLEDIIKKGIDDIV 137
                 677899999988665 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.9e-07    0.0011      69     112 ..       9      53 ..       5      68 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.9e-07
                     EEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHT.T--EEEE CS
  Acetyltransf_9  69 ktlkaagvtgVavapehrgrgvlskLlaraleemree.gqplsll 112
                     k+ + + +t+ +v  ++r+ g+++kL+++al  +re  +++++ l
      CCD25423.1   9 KEAPNGHITSLSVMRTYRRMGIAEKLMRQALFALREVyKAEFVSL 53 
                     5667799************************99998666677666 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   6.2e-07    0.0014      25      70 ..      14      67 ..       4      69 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.2e-07
                    TCTEEEEE-GGGTTSSHHHHHHHH.......TTSEEE....EEEEEE..THHHHHHHHH CS
  Acetyltransf_7 25 aeitrlaVdpeyrgkGiGraLlea.......aekgii....leqlel..naekaikfYe 70
                    ++it l V   yr+ Gi+ +L++        +         +  l++  ++++a+++Y+
      CCD25423.1 14 GHITSLSVMRTYRRMGIAEKLMRQalfalreV----YkaefV-SLHVrkSNRAALHLYR 67
                    4777899***************9524443220....122221.2333334448999997 PP

>> Acetyltransf_15  Putative acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.2     2e-06    0.0045      76     121 ..      17      59 ..       8     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 2e-06
  Acetyltransf_15  76 YtlyvsekyrgkGlakklLeeslkelkknYkvdnelllaLHlnpkD 121
                       +l v   yr+ G+a kl+ ++l +l+  Yk++    ++LH+  + 
       CCD25423.1  17 TSLSVMRTYRRMGIAEKLMRQALFALREVYKAE---FVSLHVRKSN 59 
                      5788999************************99...999*997654 PP

>> HTH_16  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1   2.5e+03      26      52 ..      16      37 ..      13      44 .. 0.57
   2 ?   12.9   0.3   3.8e-05     0.086      10      59 ..      86     130 ..      84     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
      HTH_16 26 IrklSlrklydedgnvngyvdedlkqe 52
                I++lS       +   ++ + e l ++
  CCD25423.1 16 ITSLSVM-----RTYRRMGIAEKLMRQ 37
                6777762.....233556666666555 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 3.8e-05
      HTH_16  10 GDeeAieeiLkhYegyIrklSlrklydedgnvngyvdedlkqeleiklie 59 
                 +D  A++++L++ e  I++ S r     + n n +v++dl+ +l   +i+
  CCD25423.1  86 EDAYAMKKVLDLKELQISNFSHR-----SYNANEKVEDDLESDLLEDIIK 130
                 5889******************6.....5578888999999998888887 PP

>> Acetyltransf_CG  GCN5-related N-acetyl-transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   4.4e-05     0.099      27      55 ..      16      44 ..       8      48 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.4e-05
  Acetyltransf_CG 27 fthTeVpeelrGkGiAkkLvkaalddare 55
                     +t   V   +r+ GiA+kL+++al   re
       CCD25423.1 16 ITSLSVMRTYRRMGIAEKLMRQALFALRE 44
                     67778999***************977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1096.83
//
Query:       CCD25424.1  [L=295]
Description: hypothetical protein NDAI_0F01050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-10   39.8   0.0    7.5e-10   39.2   0.0    1.3  1  Metallophos_2  Calcineurin-like phosphoesterase superfamily d


Domain annotation for each model (and alignments):
>> Metallophos_2  Calcineurin-like phosphoesterase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   4.2e-14   7.5e-10       1     153 [.       1     161 [.       1     176 [. 0.76

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 4.2e-14
  Metallophos_2   1 MklaiiSDlH...snldaleavlealke.vgvdaiihaGDleeeepevleellela.pvlaVrGNnDeevveedvlreaaelgtdlp.eeaelel. 89 
                    M l+ +SD H   +++d+++++ + l+   ++ ++i++G+  +++ e+l+ + ++   v+++rG  D   +   +++++++ ++++  +e  ++  
     CCD25424.1   1 MLLLTLSDAHipdRSIDLPAKFKKLLSVpDKISQVILLGNC-TRSSEFLNFVNQISpNVTIIRGEFD--TAFPPIMASSKRANEKVRkDEIPINTi 93 
                    99**********97788887776655443567999*****6.666668888888889**********..444444455555555552233333323 PP

  Metallophos_2  90 ...agekvlliHgdpl...gvkdalaellkeaeegsdvvvcGHtHvpevekeggvlvvnPGsvgeprdgd 153
                       +++k++ + g +    +++ +l  l+++   ++d+++ G tH  e+ + +g  +vnPGs +++ ++d
     CCD25424.1  94 irqGDFKIGCCSGYTIvpkNDPLSLLTLARQ--LDVDIMLWGGTHNVEAYTLEGKFFVNPGSCTGAFNTD 161
                    445**********988966666666666666..9999**************************9986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2341.47
//
Query:       CCD25425.1  [L=451]
Description: hypothetical protein NDAI_0F01060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-18   66.7   0.0      4e-18   66.0   0.0    1.3  1  tRNA-synt_2b   tRNA synthetase class II core domain (G, H, P,
    0.00016   21.8   1.3    0.00029   21.0   1.3    1.4  1  RasGAP_C       RasGAP C-terminus
    0.00044   20.5   4.0    0.00081   19.6   4.0    1.5  1  Seryl_tRNA_N   Seryl-tRNA synthetase N-terminal domain
    0.00096   18.7   1.4     0.0017   17.9   1.4    1.3  1  4HB_MCP_1      Four helix bundle sensory module for signal tr
     0.0018   16.6   2.7     0.0026   16.0   2.7    1.1  1  EzrA           Septation ring formation regulator, EzrA
     0.0022   18.2   1.2     0.0052   17.0   1.2    1.6  1  CREPT          Cell-cycle alteration and expression-elevated 
     0.0022   17.3   3.6     0.0036   16.7   3.6    1.2  1  FmiP_Thoc5     Fms-interacting protein/Thoc5
     0.0068   16.2   0.7      0.023   14.5   0.3    2.1  2  HSBP1          Heat shock factor binding protein 1
     0.0084   15.3   2.2      0.013   14.6   2.2    1.2  1  FH2            Formin Homology 2 Domain
     0.0094   16.0   1.6     0.0094   16.0   1.6    1.9  2  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 
  ------ inclusion threshold ------
      0.026   15.2   0.4      0.055   14.2   0.4    1.5  1  Occludin_ELL   Occludin homology domain
      0.029   14.3   0.3      0.053   13.4   0.3    1.4  1  RsgA_GTPase    RsgA GTPase
      0.037   13.9   7.2      0.076   12.8   7.2    1.5  1  DUF724         Protein of unknown function (DUF724)
      0.046   14.1   2.2       0.32   11.3   1.2    2.1  2  OmpH           Outer membrane protein (OmpH-like)
      0.054   13.7   3.8       0.13   12.5   3.8    1.6  1  Fib_alpha      Fibrinogen alpha/beta chain family
      0.055   13.4   2.5      0.097   12.6   2.5    1.3  1  Cut12          Spindle pole body formation-associated protein
      0.074   13.8   6.0       0.17   12.6   5.6    1.8  1  FliD_N         Flagellar hook-associated protein 2 N-terminus
      0.076   11.6   2.0       0.11   11.0   2.0    1.2  1  FapA           Flagellar Assembly Protein A
       0.13   11.2   0.5       0.17   10.8   0.5    1.1  1  LMBR1          LMBR1-like membrane protein
       0.16   12.3   3.7       0.23   11.8   2.4    1.9  2  Tup_N          Tup N-terminal
       0.16   11.2   0.0       0.48    9.6   0.0    1.7  2  tRNA-synt_His  Histidyl-tRNA synthetase
       0.22   11.4   6.4       0.17   11.8   4.1    2.0  2  PhaP_Bmeg      Polyhydroxyalkanoic acid inclusion protein (Ph
       0.27   10.9   1.8       0.42   10.3   1.8    1.2  1  DUF745         Protein of unknown function (DUF745)
       0.33   11.0   4.1       0.38   10.7   2.5    1.8  2  Sec2p          GDP/GTP exchange factor Sec2p
        1.8    8.9   6.3        3.7    7.9   6.3    1.5  1  KxDL           Uncharacterized conserved protein


Domain annotation for each model (and alignments):
>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   5.6e-21     4e-18       8     178 ..     248     426 ..     239     427 .. 0.87

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 5.6e-21
                   SEEEEE-SSSHHHHHHHHHHHEEEB.GGSSE.EEEEEEEEEBTTTS....TBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT.SC CS
                   xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx.xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   8 dreyiLkPtneetfvelirdevlrs.krLPl.klyqiqtkyRdEks....dsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlglef 98 
                   ++++ L++t+   ++ l+ dev++  +   + k y +++ yR E+     d++GL Rv+eF++ + ++ ++++ +++ l+ l ++  +i  +lgl+ 
    CCD25425.1 248 NDRKGLIATAGISLAGLGYDEVINLdETQGIkKSYGVSRSYRAEAGargkDTKGLYRVHEFTKVELFCWCKPELSEQLLKSLKNLQIEIITELGLSA 344
                   477889999999999999999998766655526799*********66799***********************99999999999999*********5 PP

                   EEEEEE.GTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTEEEECTTS.SEEEEEEEEEE.EEHHHHHHHHHHH CS
                   xxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.xxxxxxxxxxxxx RF
  tRNA-synt_2b  99 raiiel.msaksadykdkkefeavsesltkgieigtiqklgtrlserlgatvldenn.reksvimicaa.igveRllsaileq 178
                   + ++++  ++    +  k+ +ea+++  ++++ei++ +++ + +s+rl++++ d ++ + ++ ++++ + ++v R+++a++e+
    CCD25425.1 345 K-VLNMpANDLGNPAFMKYYIEAWMPGRGSFGEISSTSNCTDFQSRRLNTKYRDVHDgKLHFAYTLNGTaMAVPRIMLALVEN 426
                   5.666666667788999***********************************997664999******999***********98 PP

>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   1.3     4e-07   0.00029       4      88 ..      38     145 ..      36     183 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4e-07
    RasGAP_C   4 lkkkalenlkeLeelgvi.srennyqellne...IakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleql........... 87 
                 +++++ ++++ L+ l+++ ++++++++l++e   I+++ ++ ++l++  k++++s ++ lk+L++k + +++ + s+++ ++++ + l           
  CCD25425.1  38 KGRQLNNSIEVLSALKLLpTQHDEFKKLTSEmakIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNESITSLNSSMNETCSSLpnllhgscplt 136
                 67889999********************9983335568888899999**********************************999888866666666666 PP

    RasGAP_C  88 ........k 88 
                         +
  CCD25425.1 137 eprivqwiN 145
                 555555551 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   4.0   1.1e-06   0.00081       4     107 ..      23     128 ..      21     129 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.1e-06
                   HHHHHH-HHHHHHHHCCCT..CCCHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N   4 iklirenpeavkeklkkRg..edkadvdell...eldekrrelqveleelqaerNelskeIgkakkkkedaeeliaevkelkeelkaleaelkelea 95 
                   i+   + +e+++ ++k R+  ++ + + +l       ++ ++l +e+ ++q+er+++   I+  k+   d+++     k+lk +++++++  + l++
    CCD25425.1  23 INATISRIEEYEHSIKGRQlnNSIEVLSALKllpTQHDEFKKLTSEMAKIQTERKKIESLIKTNKA---DISSNQTILKSLKSKFQTMNESITSLNS 116
                   5555566677777777776653333333333001456788999999999*******9999999986...678888889******************* PP

                   HHHHHHCTS--- CS
  Seryl_tRNA_N  96 eleklllaiPNi 107
                    +++ ++++PN+
    CCD25425.1 117 SMNETCSSLPNL 128
                   ***********8 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   1.4   2.4e-06    0.0017      88     169 ..      39     121 ..      12     126 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.4e-06
   4HB_MCP_1  88 eaeidkllekyektilteeEkelleefkeqlnaYrevrkkvlelakegkkd.eAyqlyetegrparekliealeelvdlnlkv 169
                  +++++ +e    ++l + + + ++++ +++++ +++rkk+  l+k++k d    q   + +++++++++e++  l    ++ 
  CCD25425.1  39 GRQLNNSIEVLSALKLLPTQHDEFKKLTSEMAKIQTERKKIESLIKTNKADiSSNQTILKSLKSKFQTMNESITSLNSSMNET 121
                 3567999********************************************888889999999**********9998776665 PP

>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   2.7   3.6e-06    0.0026      21     127 ..      21     128 ..       9     131 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.6e-06
                 X-THHHHHHHHHHHHHHHHHHHHHTTTSSS-S---TTTHHHHHHHHHHHHHHHHHHTHHHHHT-..GGGT--S-SHHHHHTTHHHHHHHHHHHHHHHHH CS
        EzrA  21 kkikkeideLeerkneiknlpvqeelskvkklnltgeseekfeewkkkwdeiktkklpeieell..feaeelldkykfkkakkklaeleeeldeveeki 117
                   i+  i ++ee   +ik +++++ ++ +++l+l    + +f+++ ++  +i+t + ++ie+l+  ++a+ + ++  +k++k+k ++++e ++++ +++
  CCD25425.1  21 FDINATISRIEEYEHSIKGRQLNNSIEVLSALKLLPTQHDEFKKLTSEMAKIQT-ERKKIESLIktNKADISSNQTILKSLKSKFQTMNESITSLNSSM 118
                 567899************************************************.789****99334555566677789******************99 PP

                 HHHHHHHTHH CS
        EzrA 118 kkileelkel 127
                 ++  + l +l
  CCD25425.1 119 NETCSSLPNL 128
                 9988888776 PP

>> CREPT  Cell-cycle alteration and expression-elevated protein in tumour
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.2   7.2e-06    0.0052      62     126 ..      60     128 ..      24     136 .. 0.79

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 7.2e-06
       CREPT  62 eYnkrLeaeleeRkklakmledfleaqkellakaeekleelkeklekvksvrkelkshiq....sLPdL 126
                 +  k+L++e+ + ++  k++e++++  k+ ++ +++ l++lk+k +++++  ++l+s ++    sLP+L
  CCD25425.1  60 DEFKKLTSEMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNESITSLNSSMNetcsSLPNL 128
                 44689*****************************************99999998888775222277776 PP

>> FmiP_Thoc5  Fms-interacting protein/Thoc5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   3.6     5e-06    0.0036      94     172 ..      52     127 ..      26     131 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5e-06
  FmiP_Thoc5  94 laRLewEleqRkelaeqlkeleekkkkleqeieekkkfLssLppkLkslkkatkplqealglpltkerkqhelaslLPk 172
                 l+ L  + ++ k+l +++ ++++++kk+e+ i++ k+ +ss ++ Lkslk++ + ++e++    + +++ +e+ s LP+
  CCD25425.1  52 LKLLPTQHDEFKKLTSEMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNESIT---SLNSSMNETCSSLPN 127
                 6667777888899****************************************99999985...466777777777776 PP

>> HSBP1  Heat shock factor binding protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       4.1     3e+03      34      44 ..      28      38 ..      23      40 .. 0.81
   2 !   14.5   0.3   3.2e-05     0.023       8      27 ..      94     113 ..      91     128 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.1
       HSBP1 34 sriDdLEksia 44
                sri++ E+si+
  CCD25425.1 28 SRIEEYEHSIK 38
                79999999986 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.2e-05
       HSBP1   8 enlLqqlqdkFqtmsdqils 27 
                 +++L+ l++kFqtm ++i+s
  CCD25425.1  94 QTILKSLKSKFQTMNESITS 113
                 89***************987 PP

>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   2.2   1.8e-05     0.013     277     345 ..      61     129 ..      40     130 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.8e-05
                 -HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         FH2 277 nleslekevkklekglkklekelessekkeepsdkflevlkeflkeaeeklkkleeelkeakelvkelv 345
                 ++++l++e+ k++++ kk+e  +++++ + + ++++l++lk+ +++ +e++ +l++  +e+++ + +l+
  CCD25425.1  61 EFKKLTSEMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNESITSLNSSMNETCSSLPNLL 129
                 6899*******************************************************9999887765 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.6   1.3e-05    0.0094      17     105 ..      47     129 ..      21     141 .. 0.62
   2 ?   -1.8   0.1       4.1   2.9e+03      71      84 ..     324     337 ..     319     354 .. 0.49

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.3e-05
  Baculo_PEP_C  17 dLtnvLnairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalqdtlrneLtnlnsiltnLlssvtNin 105
                   ++  +L+ + +q  +   +l++ +++i+t+ +++++ +k      +++++++ t L++   ++q t+++ +t+lns +++  ss++N+ 
    CCD25425.1  47 EVLSALKLLPTQHDEF-KKLTSEMAKIQTERKKIESLIKT----NKADISSNQTILKSLKSKFQ-TMNESITSLNSSMNETCSSLPNLL 129
                   3333333333444444.66666666666655555554444....44444444444433333333.556778888888888888888874 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.1
  Baculo_PEP_C  71 nLtdalnalqdtlr 84 
                   +L ++l++lq ++ 
    CCD25425.1 324 QLLKSLKNLQIEII 337
                   33333333332222 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.4   7.7e-05     0.055      19      74 ..      57     112 ..      55     130 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.7e-05
  Occludin_ELL  19 keYkeYkelhaeleevskkfseLerelkelkegskeykkieeeilqeykklkkdpe 74 
                   ++++e+k+l +e+++++ + +++e+ +k+ k + +  ++i +++ ++++ ++++ +
    CCD25425.1  57 TQHDEFKKLTSEMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNESIT 112
                   58***********************************************9988544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.3   7.4e-05     0.053      29      99 ..      61     131 ..      46     135 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.4e-05
                  T--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  29 elslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkd 99 
                  e+++ + + + ++ e+k+ie +i  nK+D+ ++++ l++lk+++++++ +++ ++++ +e++++l +ll++
   CCD25425.1  61 EFKKLTSEMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNESITSLNSSMNETCSSLPNLLHG 131
                  555555566667899**********************************************9999999887 PP

>> DUF724  Protein of unknown function (DUF724)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   7.2   0.00011     0.076      90     174 ..      42     125 ..       8     130 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00011
      DUF724  90 lqsrlnkLlslkdeqtklleerkklekkieeeesekrkleeeidelekkilelerqlallkekkeaadkeiarlkseaekleeel 174
                 l + ++ L +lk   t+ ++e kkl +++++ ++e++k+e+ i+ ++  i+  ++ l++lk+k ++++++i +l+s++++ + +l
  CCD25425.1  42 LNNSIEVLSALKLLPTQ-HDEFKKLTSEMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNESITSLNSSMNETCSSL 125
                 44555555556655554.6889999***************************************************999887765 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.2   0.00045      0.32       8      54 ..      63     109 ..      60     125 .. 0.87
   2 ?    1.0   0.0      0.68   4.9e+02      98     116 ..     195     213 ..     162     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00045
                 HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT CS
        OmpH   8 qkileespegkaaqeqlekkfkklqaeleakekelqklqeelqkkak 54 
                 +k+ +e+ + ++ ++++e+ +k+ +a++ + ++ l++l+ ++q+ ++
  CCD25425.1  63 KKLTSEMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNE 109
                 68899*************************************95554 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.68
                 HHHHHHHHHHHTT-SEEEE CS
        OmpH  98 inkaikevakekgydlvld 116
                 + k   ++ak++g++lv+ 
  CCD25425.1 195 LVKYAIDIAKKRGFSLVIP 213
                 5566678**********97 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.8   0.00018      0.13      75     138 ..      62     124 ..      15     127 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
                 HHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSB-EE CS
   Fib_alpha  75 ndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeqdidqkerkCkepCkd 138
                  ++++++++k +++e  +++  i+++   i   q++l+s+++k q +++ i++++++ +e C++
  CCD25425.1  62 FKKLTSEMAK-IQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNESITSLNSSMNETCSS 124
                 2445555544.455999*******************************************9985 PP

>> Cut12  Spindle pole body formation-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.5   0.00014     0.097      78     135 ..      63     120 ..      57     125 .. 0.92

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00014
       Cut12  78 sdaelEieklikyrslaksyakkKdeealrlkeklkeEeekvaemekkvselaskvvs 135
                 ++++ E+ k+   r+  +s++k   ++++  +  lk  ++k + m++++++l s++ +
  CCD25425.1  63 KKLTSEMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNESITSLNSSMNE 120
                 57899***********************************************999976 PP

>> FliD_N  Flagellar hook-associated protein 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   5.6   0.00023      0.17      13      60 ..      72     118 ..      61     132 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00023
                 XXXXXXXXXX.XXXXXXXXXXXHHHHHHHHHHHHHHHHHHHHHXXGGGG CS
      FliD_N  13 mkaerakldk.leqkktklewkqsayrelnsklsnlksalsalsksstf 60 
                 ++ er+k++  ++++k+++++ q+++++l+sk++++++++++l+  s++
  CCD25425.1  72 IQTERKKIESlIKTNKADISSNQTILKSLKSKFQTMNESITSLN--SSM 118
                 567888999899**************************888673..344 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.0   0.00016      0.11     311     404 ..      33     121 ..       7     133 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00016
        FapA 311 vkakklGselgtkteievglde.pelkeklkeleeeleeleeeleklkkkikklpklkaekqlesekkeqlkklletkeklkeeleeleeelkel 404
                 ++  + G +l++ +e+  +l+  p+ ++++k+l  e+ +++ e +k+++ ik +++  +++      +  lk+l+ + + ++e++++l+  ++e 
  CCD25425.1  33 YEHSIKGRQLNNSIEVLSALKLlPTQHDEFKKLTSEMAKIQTERKKIESLIKTNKA-DISS-----NQTILKSLKSKFQTMNESITSLNSSMNET 121
                 44445566666667666644431555666788888888888888888888888888.4433.....24666666666677777777777766655 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   0.00023      0.17     198     306 ..      58     201 ..      44     244 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
       LMBR1 198 ldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilkkvPeeiaeklks..........................nenkte 270
                   +e+kkl  e ak++te+++ e  ++  + +++ +++ +++ +   + ++e +++ ++ ++e+++s                            n+++
  CCD25425.1  58 QHDEFKKLTSEMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNESITSLNSSMNETCSSlpnllhgscplteprivqwinpketyAPNPQL 156
                 45699****************999999999999999999999997446666666668888888888888899888888888888889887776444455 PP

       LMBR1 271 eslakle.kqlikalqkrertekqwkrllekalele........d 306
                 +++   + k++i   + ++ t + w+ ll+  +ele        d
  CCD25425.1 157 SHVEIMTrKKMIDLKKASQVTGTSWYYLLNSGAELEmalvkyaiD 201
                 555544435566667778888999999998888887655555551 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       7.1   5.1e+03      26      35 ..      29      38 ..      22      60 .. 0.68
   2 ?   11.8   2.4   0.00032      0.23      11      61 ..      60     110 ..      46     121 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 7.1
       Tup_N 26 qkdeyelkiq 35
                + +eye++i+
  CCD25425.1 29 RIEEYEHSIK 38
                5578888765 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00032
       Tup_N  11 qEfdalsqeasslkaqkdeyelkiqsqiqElqqirqtlyeLeeahrkikqq 61 
                  Ef++l++e+ +++ +++ +e+ i+++ +++ + +  l+ L+++++ + ++
  CCD25425.1  60 DEFKKLTSEMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNES 110
                 7*********************************************99875 PP

>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       3.6   2.6e+03     232     240 ..      66      74 ..      34     117 .. 0.52
   2 ?    9.6   0.0   0.00067      0.48       6      60 ..     185     244 ..     181     255 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.6
                    HHHHHHHHH CS
  tRNA-synt_His 232 ldeleelaa 240
                     +e++++++
     CCD25425.1  66 TSEMAKIQT 74 
                    122211111 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00067
                    ETCHHHHHHHHHHHHHHHHHHTT-EEEE--SEEEHHHHCTTS..TCCHH...HS-EEE-T CS
  tRNA-synt_His   6 lpeeaekieelrrrlldlfeswGYelVspPllEyldslltga..gedld...qtfklvDq 60 
                    l + ae + +l +  +d+++++G++lV+pP++ +ld +++ +   +d++   q++k+ D+
     CCD25425.1 185 LNSGAELEMALVKYAIDIAKKRGFSLVIPPSVTRLDIINSCGfrPRDMNnenQIYKIGDD 244
                    5566777888999999********************999987775554345689998886 PP

>> PhaP_Bmeg  Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   4.1   0.00024      0.17      16      77 ..      32      93 ..      30     128 .. 0.70
   2 ?   -2.6   0.0       6.6   4.7e+03      31      47 ..     321     338 ..     312     347 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00024
   PhaP_Bmeg 16 qweeslerfaslskqvEqlt.Lkalkqqqdlvkeltkalselekeskqltaeledqlqktven 77
                ++e+s++   +l++ +E l+ Lk l +q+d  k+lt+++ +++ e k++++ ++ ++ +  +n
  CCD25425.1 32 EYEHSIKG-RQLNNSIEVLSaLKLLPTQHDEFKKLTSEMAKIQTERKKIESLIKTNKADISSN 93
                67777764.689999998754****************************99998776554333 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 6.6
   PhaP_Bmeg  31 vEqltLkalkq.qqdlvk 47 
                 + ++ Lk+lk+ q++++ 
  CCD25425.1 321 LSEQLLKSLKNlQIEIIT 338
                 445666666653445554 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.8   0.00059      0.42      94     165 ..      50     121 ..      23     124 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00059
      DUF745  94 aaakaakqaqqqlealkallkaakenlenaeqvaagaqqelaektqlleaAkkRveeLkkqlkearkdlekt 165
                 +a k   + + +++ l++ +++++++ +++e++ +  ++++++ +++l++ k++++++++ +++  + +++t
  CCD25425.1  50 SALKLLPTQHDEFKKLTSEMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNESITSLNSSMNET 121
                 566777788999************************************************999988877776 PP

>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.4     0.089        64      43      90 ..      30      79 ..      26      81 .. 0.77
   2 ?   10.7   2.5   0.00054      0.38      44      86 ..      68     110 ..      63     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.089
                HHHHHHHHHHHHHHHHHT..THCHCCCHCTSSSSHHHHCTTTXXXXXXXX CS
       Sec2p 43 kekealekkneklkeqLk..eketlleslqeqLkeLkevlekmeeeseeq 90
                 e+++  +k ++l++ ++   + +ll ++ ++ k+L + ++k+++e+++ 
  CCD25425.1 30 IEEYEHSIKGRQLNNSIEvlSALKLLPTQHDEFKKLTSEMAKIQTERKKI 79
                57777788888888877722445689999999999999999999998875 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00054
                 HHHHHHHHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTTXXXX CS
       Sec2p  44 ekealekkneklkeqLkeketlleslqeqLkeLkevlekmeee 86 
                 e ++++++ +k+++ +k +++ ++s+q+ Lk+Lk+++++m+e 
  CCD25425.1  68 EMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNES 110
                 678999**********************************986 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.3    0.0051       3.7      13      80 ..      53     120 ..      41     123 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0051
        KxDL  13 eilalQaqtsgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkaklak 80 
                 + l +Q++  ++l ++ +++++ +++ ++  +  +a++ ++++ lk++k+  +++++ i+sl++ +++
  CCD25425.1  53 KLLPTQHDEFKKLTSEMAKIQTERKKIESLIKTNKADISSNQTILKSLKSKFQTMNESITSLNSSMNE 120
                 67889**********************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1298  (0.0723967); expected 358.6 (0.02)
Passed bias filter:                      750  (0.0418317); expected 358.6 (0.02)
Passed Vit filter:                       144  (0.00803168); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 3250.42
//
Query:       CCD25426.1  [L=136]
Description: hypothetical protein NDAI_0F01070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-37  125.8   7.6    9.2e-37  125.3   7.6    1.2  1  Ribosomal_L27e  Ribosomal L27e protein family
    0.00066   19.5   1.6     0.0012   18.7   1.6    1.5  1  KOW             KOW motif


Domain annotation for each model (and alignments):
>> Ribosomal_L27e  Ribosomal L27e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.3   7.6     1e-40   9.2e-37       1      85 []      52     136 .]      52     136 .] 1.00

  Alignments for each domain:
  == domain 1  score: 125.3 bits;  conditional E-value: 1e-40
  Ribosomal_L27e   1 kVtkkmskkkiakrskikpFvKvvnynhlmpTRYtvdvedlkelvkkealkdpakrkeakkevkkkfeeryksgknkwffkkLrF 85 
                     kVtkk ++kk+akr+kikpF+Kvvnynhl+pTRYt+dve++k++v++e++++p++r+eakk +kk+feer+++gkn+wff+kLrF
      CCD25426.1  52 KVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVESFKSVVSTETFEEPSQREEAKKVIKKAFEERHQAGKNQWFFSKLRF 136
                     9***********************************************************************************9 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   1.6   1.3e-07    0.0012       2      25 ..       8      31 ..       7      43 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.3e-07
                TSEEEESSSTTTTCEEEEEEEETT CS
         KOW  2 GdhVkVvsGphkGktGkVvkvdqh 25
                G++  Vv+G+++Gk+ ++vk  ++
  CCD25426.1  8 GKVAVVVRGRYAGKKVVIVKPHDE 31
                999****************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 1137.84
//
Query:       CCD25427.1  [L=600]
Description: hypothetical protein NDAI_0F01080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-66  225.4   0.0    5.2e-66  223.6   0.0    1.8  1  DAO              FAD dependent oxidoreductase
    2.2e-05   24.6   0.0    6.6e-05   23.1   0.0    1.9  1  NAD_binding_8    NAD(P)-binding Rossmann-like domain
    0.00014   21.2   0.2    0.00037   19.8   0.0    1.6  2  Thi4             Thi4 family
    0.00053   19.9   1.0     0.0011   18.9   1.0    1.5  1  DUF3439          Domain of unknown function (DUF3439)
     0.0057   15.5   0.0     0.0089   14.9   0.0    1.4  1  MCRA             MCRA family
  ------ inclusion threshold ------
       0.05   13.9   0.1        0.1   12.9   0.1    1.5  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.061   12.6   0.0       0.17   11.1   0.0    1.7  2  Pyr_redox_2      Pyridine nucleotide-disulphide oxidoreductas
       0.11   11.3   0.3        1.8    7.3   0.1    2.1  2  Trp_halogenase   Tryptophan halogenase
        1.1    9.7  10.9        3.8    8.0  10.9    2.0  1  CENP-B_dimeris   Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.6   0.0   2.6e-69   5.2e-66       1     351 [.      20     574 ..      20     575 .. 0.74

  Alignments for each domain:
  == domain 1  score: 223.6 bits;  conditional E-value: 2.6e-69
                 EEEEECTSHHHHHHHHHHHHTT........EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTHHHHHHHHHHHHHH.HHHHHHHSSTTSEEEEEEEEEE CS
         DAO   1 dvviiGGGiiGlstAyeLarrg........VtllekgdiagsgaSgrnsgllhsglrylpeaselarlslealeel.releeelgididyrrtGllsla 90 
                 +++iiG+GiiG++tAy+L++++        +++le+++ a+ gaSg+++gll+s ++ +p+   +++ls+++++el + +++e++  +dyrr +++sl+
  CCD25427.1  20 KIIIIGAGIIGVCTAYYLTKHPnfnpekyhIIILESREVAA-GASGKAGGLLAS-WA-FPN--MIVPLSFQLHQELsDLYNGETN--WDYRRLTTVSLE 111
                 59*******************7788899*********6666.************.87.996..599**********9*****998..***********9 PP

                 SS................................................................................................H CS
         DAO  91 ad................................................................................................e 93 
                 ad                                                                                                e
  CCD25427.1 112 ADvqdenikfqeqrlnlltrekelknnflrdsnslssilssnddigrnnnngnnngegrhrhrrhrhlkegilehgdsddgddsddefeedsdedsedE 210
                 976666777777777777776666666666666666666666666666666666666666666666666666666666666666665555555555550 PP

                 HHHHHHH........................................................................................HHHH CS
         DAO  94 eeleald........................................................................................klla 104
                       d                                                                                        ++++
  CCD25427.1 211 ------DedeklyfnaansmsgvisqssvnvnknkkymkdnnhqynanddnmhntlsardrlsnsgssinsilnpattastttmsttsitaptaqDQYD 303
                 ......055555566666666666666666666666666666666666666666666666666666666666666666666666666666655546666 PP

                 HHHHTTTTEEEEEHHHHHHHSTTSTTTSEEEEETT.EEEEEHHHHHHHHHHHHHHTT.-EEEESECEEEEEEEE..TCEEEEE..............EE CS
         DAO 105 llleagldaelldaeevrelepalpgllgalfypd.tgqvdpakltaalaraaealG.veilegtevtgleeed..gkvwgve..............rt 185
                  +l+ +ld  ++++e+v   +        +l+++d t+qv+p+k+t++++++a +   +++++g +v++++ +d  +k++g++              + 
  CCD25427.1 304 IALPRDLD--WIRRELVDNCS--------SLGNRDsTAQVHPYKFTRFILQRAMESDcIDLILG-KVVDVKIDDsrNKATGIRyqpikkmhedassdN- 390
                 66777776..**998555444........34444415***************7666538*****.999997766778889998888888765433331. PP

                 CTEEEE............EEEEEEE--GGGHH.HHHTTCTTTSEEEEEEEEEEEEEECCTHSTGS......GCSEEEEE.EEETTTTEEEEEETTSEEE CS
         DAO 186 tpgend............aadavVnaaGawsd.llgllkeldlpispvrgqvlvlkplseklvsp......aailpvpe.tdddgrgvyvtprkdgrvl 264
                                    a+++++++G+w++ l+   k   +pis++r++++ +kp   k + +      +ai+++++ ++++ +++++++r+ ++v+
  CCD25427.1 391 -----IvdkenivdidgdGATKIIITTGPWTSeLI---K--SCPISGLRAHSIIIKPNYPKNNGNptqvspYAIFTELKiNNNEYFSPEIYARR-DEVY 478
                 .....13456666677774478********99666...5..47************998875544433333355555555**************9.77** PP

                 EEESSE.....EETTCSSTSCSHHHHHHHHHHHHHHSGG..GCGEEEEEEEEEE..E..TTSSEEEEEEETEEEEEEEEECTTTHHHHHHHHHHHHHH CS
         DAO 265 vGgtad.....eesgdddpevdeedidellealrklfPq..lgdvlrkwaGlrp..l..pdglpligetpgvkglylatGhsghGltlapatGkllae 351
                 v+g++d     ++s++ + + +e++++el+++++k++    +g++ +++a+++p  +  ++ +pliget+ v++ly+a+Ghs++G+++apat ++++e
  CCD25427.1 479 VCGEGDtlvkiPDSTKAV-AYNEDKCEELYHYVSKISTPlsDGHIIKQQACYLPvlNvaTSSGPLIGETN-VNNLYIASGHSCWGINNAPATERIMSE 574
                 *****99**977777777.******************5524599**********85354588******98.99*******************999987 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   3.3e-08   6.6e-05       1      35 [.      23      63 ..      23      95 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 3.3e-08
                   EE--SHHHHHHHHHHHCC......TEEEEEE-SSSSSSGGG CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka......gfdvlllekrdrlGGra 35
                   I+GaG+ G ++Ay+L+k+      ++++ +le+r+   G +
     CCD25427.1 23 IIGAGIIGVCTAYYLTKHpnfnpeKYHIIILESREVAAGAS 63
                   9****************776777799*******99876543 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.9e-07   0.00037      18      68 ..      19      79 ..       9      96 .. 0.79
   2 ?   -2.6   0.1       1.3   2.5e+03      97     167 ..     336     402 ..     326     412 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.9e-07
                EEEEEE--SHHHHHHHHHHHHCTTS.....-EEEEES.SSS--TTTTTTSTT....BSEEE CS
        Thi4 18 sDvvivGaGssGLtaayylakkpdl.....kvailer.svspGGGawlGGql....fsaiv 68
                + ++i+GaG  G+ +ayyl+k+p++     +++ile+ +v+ G     GG l    f +++
  CCD25427.1 19 QKIIIIGAGIIGVCTAYYLTKHPNFnpekyHIIILESrEVAAGASGKAGGLLaswaFPNMI 79
                579*******************997444336999996268999888888876333355565 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHTSTTEEEEESEEEEEEEEETB.TEEEEEEEEEHHHHTCTTTSS.-B-EEEEEEEEEE--G CS
        Thi4  97 alftstllskvlqlanvkllnavaveDlivreg.egvaGvvinwtlvelahdtqscvDPlvirakvvvdatG 167
                  +ft  +l ++++   + l+ + +v D+ + ++ ++ +G  i ++ +++ h++ s    ++++ + +vd  G
  CCD25427.1 336 YKFTRFILQRAMESDCIDLILGKVV-DVKIDDSrNKATG--IRYQPIKKMHEDASS--DNIVDKENIVDIDG 402
                 5667777778888777777777655.5655553244444..567777777744442..35666666666555 PP

>> DUF3439  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   1.0   5.6e-07    0.0011       9      64 ..     239     297 ..     231     307 .. 0.69

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.6e-07
     DUF3439   9 srwikknskivkakssa.vdpdsa..kcsgsgkpvrsiicpttttttttttttmptttt 64 
                  +++k n+++ +a++++  ++ sa  + s sg  + si+ p+tt++ttt +tt  t+ t
  CCD25427.1 239 KKYMKDNNHQYNANDDNmHNTLSArdRLSNSGSSINSILNPATTASTTTMSTTSITAPT 297
                 56777777766555554255666623689************998888777766555433 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.5e-06    0.0089       2      47 ..      19      66 ..      18     130 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.5e-06
                -EEEEE--SHHHHHHHHHHHHTT---GGG..EEEE-SS---------- CS
        MCRA  2 kkaylvGsGiasLaaAvyLirdakvpgen..ihileelkvaggsldga 47
                +k+ ++G+Gi +  +A+yL ++ ++++e+  i ile+ +va g+  +a
  CCD25427.1 19 QKIIIIGAGIIGVCTAYYLTKHPNFNPEKyhIIILESREVAAGASGKA 66
                6889***********************963377899999999987655 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   5.1e-05       0.1       1      30 [.      21      53 ..      21      67 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.1e-05
                     EEEE--SHHHHHHHHHHHCTCCT-G...EEEEE CS
  Sacchrp_dh_NADP  1 vliiGaGsvGqavaellarhfdvda...eitva 30
                     ++iiGaG +G ++a +l +h ++ +   +i++ 
       CCD25427.1 21 IIIIGAGIIGVCTAYYLTKHPNFNPekyHIIIL 53
                     89*********************9886555554 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.5e-05      0.17     142     164 ..      14      40 ..       2      65 .. 0.73
   2 ?   -2.3   0.0         1   2.1e+03     100     119 ..     405     428 ..     336     485 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.5e-05
                  T....SEEEEES-SHHHHHHHHHHHHH CS
                  x....xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 142 p....krivvvGgGyiGvElAaalakl 164
                  +    ++i+++G+G iGv +A +l+k 
   CCD25427.1  14 KsegkQKIIIIGAGIIGVCTAYYLTKH 40 
                  134457*****************9886 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1
                  ESEEEE---EEE-BC....TCTTC CS
                  xxxxxxxxxxxxxxx....xxxxx RF
  Pyr_redox_2 100 ydklvlAtGssprdl....gipGv 119
                  + k+++ tG ++  l    +i G+
   CCD25427.1 405 ATKIIITTGPWTSELikscPISGL 428
                  356666666555544454455555 PP

>> Trp_halogenase  Tryptophan halogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.1   0.00092       1.8       1      42 [.      20      64 ..      20      69 .. 0.83
   2 ?    1.9   0.0     0.041        82     154     194 ..     336     378 ..     308     394 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00092
                    EEEEE--SHHHHHHHHHHHHHTTTS...SEEEEEE-SSS---SS- CS
  Trp_halogenase  1 kivivGGGtaGwlaAaalakalkgk...levtlveseeigtvgvG 42
                    ki+i+G+G+ G  +A +l k+ + +   +++ ++es e+     G
      CCD25427.1 20 KIIIIGAGIIGVCTAYYLTKHPNFNpekYHIIILESREVAAGASG 64
                    79*****************986654446999999*9998766555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.041
                     HHHHHHHHHHHHHC.T-EEEE--EEEEEE-T.TS-EEEEEETT CS
  Trp_halogenase 154 alyakfLrrvaear.Gvtrvegkvvevqlde.dgrveslrled 194
                      ++ +f+ + a +   ++ + gkvv+v++d+ +++ +++r++ 
      CCD25427.1 336 YKFTRFILQRAMESdCIDLILGKVVDVKIDDsRNKATGIRYQP 378
                     5677876666655549**************9999999988865 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  10.9    0.0019       3.8      12      40 ..     185     214 ..     176     257 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0019
  CENP-B_dimeris  12 sesesdeeeeeeeedeededee.ddeddde 40 
                      + +sd+ ++ ++e eed de+ +ded+de
      CCD25427.1 185 EHGDSDDGDDSDDEFEEDSDEDsEDEDEDE 214
                     455667666666666666554424555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1144  (0.0638072); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.41
# Mc/sec: 4396.40
//
Query:       CCD25428.1  [L=236]
Description: hypothetical protein NDAI_0F01090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.5e-33  113.2   1.9    1.1e-32  112.2   1.9    1.5  1  Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal do
    2.4e-26   92.0   0.5    4.9e-26   91.0   0.5    1.5  1  Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin
     0.0052   16.9   0.0      0.011   15.9   0.0    1.4  1  HHH_2     Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.088   13.3   0.6          2    8.9   0.1    2.4  2  FadA      Adhesion protein FadA


Domain annotation for each model (and alignments):
>> Sod_Fe_C  Iron/manganese superoxide dismutases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.2   1.9   2.5e-36   1.1e-32       3     102 .]     132     232 ..     130     232 .. 0.94

  Alignments for each domain:
  == domain 1  score: 112.2 bits;  conditional E-value: 2.5e-36
                 HHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETT..TEEEEEEEETTTBGGGGTTCEEEEEE-SGGGTHHHHTT-HHHHHHHHGGGBBHHHH CS
    Sod_Fe_C   3 gelaeaieedfgslekfkkefkaaalavfgsGwawLvldkk..kkLeivttknqdnplvkeakplLalDvwehAYyldyqnkradYieafwnvvnWkev 99 
                 ++la++i+e++gsl+++ k  +++ ++v+gsGwa++v++ +  +kL++v+t nqd+ ++   kp++a+D wehAYyl+yqn++adY++a+wnv+nWke+
  CCD25428.1 132 SALAKQIKEQYGSLDNLIKVTNEKLAGVQGSGWAFIVKNVSngGKLDVVQTYNQDT-VTGVLKPIVAIDAWEHAYYLQYQNQKADYFKAIWNVINWKEA 229
                 689***********************************988556***********7.666788***********************************9 PP

                 HHH CS
    Sod_Fe_C 100 eer 102
                 ++r
  CCD25428.1 230 ARR 232
                 876 PP

>> Sod_Fe_N  Iron/manganese superoxide dismutases, alpha-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.5   1.1e-29   4.9e-26       3      82 .]      33     118 ..      31     118 .. 0.92

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 1.1e-29
                 -----SS-TTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHHCHHHHCHCCHHHHHH......HHHHHHHHHHHHHHHHHHHHHTB- CS
    Sod_Fe_N   3 eLpeLpYaydaLePhisketlelHhdkHhktYvnnlNkalekleeakkkleelvlk......klekalrnnagghvnHslfwknls 82 
                 +Lp+L+++  +LePhis ++ e+H++kHh+tYvn++N+a+e+ e  k kl++  ++      +l++++++++gg +nH lfwknl+
  CCD25428.1  33 TLPDLDWDFGDLEPHISGQINEIHYTKHHQTYVNGYNAAVEQFEDLKPKLDTNPVEisqkliALQQNIKFHGGGFTNHCLFWKNLA 118
                 8******************************************99988888766555677889*********************95 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.4e-06     0.011      14      43 ..     133     162 ..     132     166 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.4e-06
       HHH_2  14 ktAklLakrFksldaLkkasleeLlevddi 43 
                 + Ak++ ++++sld+L k + e+L+ v++ 
  CCD25428.1 133 ALAKQIKEQYGSLDNLIKVTNEKLAGVQGS 162
                 679************************985 PP

>> FadA  Adhesion protein FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00045         2      42      94 ..      46      98 ..      42     103 .. 0.85
   2 ?    2.2   0.1     0.055   2.5e+02      66      90 ..     133     157 ..     130     161 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00045
        FadA 42 akieeklakleadsevrfykdeYkellkeyksllkelekeikekekkianfek 94
                  i+ ++++++ ++  + y + Y+  ++++++l  +l+++  e ++k+  +++
  CCD25428.1 46 PHISGQINEIHYTKHHQTYVNGYNAAVEQFEDLKPKLDTNPVEISQKLIALQQ 98
                578999********************************987777776666555 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.055
        FadA  66 ellkeyksllkelekeikekekkia 90 
                  l+k+ k+ + +l++ ik  ++k+a
  CCD25428.1 133 ALAKQIKEQYGSLDNLIKVTNEKLA 157
                 5788888899999999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1880.16
//
Query:       CCD25429.1  [L=580]
Description: hypothetical protein NDAI_0F01100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-99  331.9   0.0    8.2e-99  331.4   0.0    1.2  1  p450      Cytochrome P450


Domain annotation for each model (and alignments):
>> p450  Cytochrome P450
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.4   0.0  4.6e-103   8.2e-99       1     462 [.     104     570 ..     103     571 .. 0.95

  Alignments for each domain:
  == domain 1  score: 331.4 bits;  conditional E-value: 4.6e-103
                 --SESEHHCCHCHHHHTTTCCHHHHHHHHHHHH-SEEEEEETTEEEEEEESHHHHHHHHCTSTTTTCEESSHHHHHHHHHTTTTSSSTTCGH.HHHHHH CS
        p450   1 Ppgptplplvgnllqlgrkeelhevlrklqkkygpifrlklgskpvvvlsgpeavkevlikkgeefsgrpdeallatsrkpfkgkgvlfang.ekwkkl 98 
                 P  ++++p+vg+++ +g  + +++++ ++qkk+g+if++ l +k ++v+ gp+ ++ ++++k +++s++  +++l+t   p  gkgv+++ + ++ + +
  CCD25429.1 104 PMVFYWIPWVGSAVTYG--QRPYDFFADAQKKHGDIFSFLLLGKVMTVYLGPKGHEFIFNAKLADVSAEEAYSHLTT---PVFGKGVIYDVPnHRLMDQ 197
                 556789***********..89***********************************************999999999...************999**** PP

                 HHHHHHHHTSHSTTTHHHHHHHHHHHHHHHHHCCCCHCSEEETHHHHHHHHHHHHHHHHHSSHHHTTTSSHHHHHHHHHHHHHHHHHCHHHHCCCCCHH CS
        p450  99 RrfltptltsfgklsleelveeeaedlveklrkkagesselditellskaaldvigsilFgarfdlledeklselvkaveelssllskssvqllllfpl 197
                 ++f+  +l +    +++ +v    e+ ++++++++++  + + ++   +++++   +++F+a+  ll++e++++l + ++ l++ l+  ++ ++++fp 
  CCD25429.1 198 KKFVKGALSKE---AFKTYVPLFKEEILKYFKDSKNFDYNNKEKTGEIDVMVTQPEMTIFTASRTLLGKEMREKLNTSFAGLYTDLDRGFTPINFVFPN 293
                 *********77...6666666666677899999999998889999999**************************************************5 PP

                 HTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCHCHCSCSSCSHHHHHHHHCTTCTCTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH CS
        p450 198 lkylptkllrklkeavkklkdlldklieerretldsakksrrdfldalllakkekkgesklsdeelaatvlellfaGvdTtsstlswaLyeLaknPevq 296
                 l +++  +++k ++a+++++d++  li++rr++ d +   +rd++d l++++ ++k++ k++d+e+a+ ++ +l++G++T+++t++w+L++La++P+vq
  CCD25429.1 294 L-PFL-AHYKKRDHAQRTISDTYLSLIKKRRAENDIQ---DRDLIDTLMKNS-TYKDGVKMTDREIANLLIGVLMGGQHTSAATSAWVLLHLAERPDVQ 386
                 5.566.68888888***********************...9**********7.888889**************************************** PP

                 HHHHHHHHHHC.CTTTT-HHHHCCT-HHHHHHHHHHHHHSCSSTTEEEEESSSCEEETT..EEE-TT-EEEEEHHHHHT-TTTSSSTTS--GGGGB-TT CS
        p450 297 eklreEidevl.gdkreptyddlqklpyldavikEtLRlhpvvplllpRevtkdvvirg..ylipkGtevivnlyalhrdpevfpnPeeFdpeRFldek 392
                 ++l+ E +++  ++ +e++y+ l+++p+l+++ikEtLRlh++++ +l R+v +d+++++  y+ipkG++v+v+++++h  + +fp+P +F+++R++++ 
  CCD25429.1 387 QELYDEQMRITeNGTKELDYETLENMPLLNQTIKETLRLHHPLH-SLFRKVIRDMQVPNtpYVIPKGYHVLVSPGYTHLQEHYFPEPTKFNIHRWDNDA 484
                 ***********99999****************************.*****************************************************9 PP

                 S...............CTESSCTT--TTEEGGGS-TTHHHHHHHHHHHHHHHHHHEEEEESTSTSGGEEESSC.SSEEESSSSEEE CS
        p450 393 g...............nskrksfaflPFGaGpRnCiGerlArmelklflatlLqnFevelqpetdpppileks.glllppkpiklk 462
                                 ++k+ s  +lPFG G++ CiGe  A+++l ++++ ++++ ++ + ++++  pi + + +++lp+ p+k++
  CCD25429.1 485 SssysngdeidygfgaITKGVSSPYLPFGGGRHRCIGELYAYCQLDVIISEFIRHMKWRFAEKGQTVPISDFTsMVTLPTGPAKII 570
                 99**************889******************************************9999999988888*******99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       800  (0.0446204); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.41
# Mc/sec: 4274.44
//
Query:       CCD25430.1  [L=710]
Description: hypothetical protein NDAI_0F01110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.3e-125  417.9   0.5   6.2e-125  417.4   0.5    1.2  1  LCAT      Lecithin:cholesterol acyltransferase
  ------ inclusion threshold ------
      0.016   14.7   0.0      0.037   13.5   0.0    1.6  1  Lipase_2  Lipase (class 2)
      0.038   13.1   0.0      0.063   12.3   0.0    1.3  1  DUF1749   Protein of unknown function (DUF1749)


Domain annotation for each model (and alignments):
>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.4   0.5    1e-128  6.2e-125       1     391 [.     237     673 ..     237     674 .. 0.97

  Alignments for each domain:
  == domain 1  score: 417.4 bits;  conditional E-value: 1e-128
        LCAT   1 yFrkelWldldmllslvvd..cwlknlelvldkstglqedapgvkiRadqGfeaieyldkskiagkqyeiwkklvknlvkiGyeknktvvaapYDWRls 97 
                 +Frk+lW++++ml+++v+d  cwlk  +l+ld++tgl  d+  +++Ra+qGfe+++y+    +ag  y+iw+k+++nl  +Gy +n  ++ a+YDWRl+
  CCD25430.1 237 HFRKRLWGSFYMLRTMVLDkiCWLK--HLMLDPETGL--DPEHFTLRAAQGFESTDYF----MAG--YWIWNKVIQNLGTLGYDPNT-MITASYDWRLA 324
                 8************************..**********..*******************....***..*******************9.*********** PP

        LCAT  98 ...leerdkYfskLkelieealklsgkkvvliaHSmGnllvlyflkwveaea.........WvdqhikafislgapllGsvkavkallsGenkgipvls 184
                    le+rd+Yf+kLk +ie ++++ ++k vl++HSmG+++v+yflkwveae+         Wvd+hi +f++++++llG +kav+al+sGe+k++++l+
  CCD25430.1 325 yldLERRDRYFTKLKRQIELFYDSTNEKAVLVGHSMGSQIVFYFLKWVEAEGphygnggpgWVDKHIASFVNVAGTLLGVPKAVPALISGEMKDTIQLN 423
                 *************************************************************************************************** PP

        LCAT 185 eltlrvlsksfsss............lsllPkgeevlwkdvawpsdeiliqtpsinltegalvrf....................fsdevdlkdllsft 251
                  l++++l+k+fs+             +s+lPkg++++w++  ++ ++   ++++   t+g+++rf                     ++++++ d+++f 
  CCD25430.1 424 ALAMYGLEKFFSRKervqllqtwggiPSMLPKGGALIWGNKTYSMEDSQHNNTD---TYGNFIRFedrqkrrnidnnvtekshspLHQNMTMLDAIDFV 519
                 ********************************************9998888888...*********************99999998889********** PP

        LCAT 252 lnvlagwvmvkvaedldgglsklekelkk..lkkkkyvkeeetklpeaPgvkvyciygvglptergyvyapek.kssplnyilsdidyeteesivskdG 347
                 ++v+  w++ +   ++  +++k+e+e+k    ++++++++ e++lp+a + k+yciygv++pter+yvy++ek + s l y+   idye+e++++ ++G
  CCD25430.1 520 MKVSPKWLQERIKDQYTYDYAKTEEEMKGneKHHSHWSNPLEVPLPNAADLKIYCIYGVHNPTERAYVYKEEKgNKSSLPYT---IDYESEQPVFFTEG 615
                 ***************************9988999************************************985244556666...9************* PP

        LCAT 348 detvpkeslelCkkWqd.....nkakvkvtvaelkeek.........rsaehvellvs 391
                 d+tvp+  + +C+kW++     n+ + +v+++elk+++         rsaehv++l+s
  CCD25430.1 616 DGTVPLTTHAMCHKWAQgksayNPGGSEVVIVELKHQPdrfdirggaRSAEHVDILGS 673
                 *******************************************************987 PP

>> Lipase_2  Lipase (class 2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.2e-06     0.037      18     131 ..     297     409 ..     291     487 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.2e-06
    Lipase_2  18 lskliqkflekgyteaelYattygdteestslerlekCeyvkqlRklilaVlkyTgakkvdivahsmGvpiaRkailGgkcvdtnedLgep..ltskvd 114
                 ++k+iq++ + gy  +++ + +y+ + +   ler +   y ++l++ i+     T++ k   v+hsmG+ i  +  +  +++  +   g p  + +++ 
  CCD25430.1 297 WNKVIQNLGTLGYDPNTMITASYDWRLAYLDLERRD--RYFTKLKRQIELFYDSTNE-KAVLVGHSMGSQIVFYFLKWVEAEGPHYGNGGPgwVDKHIA 392
                 89999*******************999977777777..9******************.7779**********999999988876666666555899999 PP

    Lipase_2 115 tfvsvaganaGlllcas 131
                  fv vag   G+     
  CCD25430.1 393 SFVNVAGTLLGVPKAVP 409
                 99999998888765544 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.1e-05     0.063     101     126 ..     347     372 ..     315     397 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.1e-05
     DUF1749 101 eekkekvvlmGHstGsqdvlyYltss 126
                 + ++ek vl+GHs Gsq v+y+l+  
  CCD25430.1 347 DSTNEKAVLVGHSMGSQIVFYFLKWV 372
                 56899***************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       817  (0.0455686); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5150.50
//
Query:       CCD25431.1  [L=336]
Description: hypothetical protein NDAI_0F01120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-39  135.0   0.7    1.6e-39  135.0   0.7    2.2  2  Autophagy_N      Autophagocytosis associated protein (Atg3), 
    2.7e-14   52.4   1.1    4.9e-14   51.5   1.1    1.5  1  Autophagy_C      Autophagocytosis associated protein C-termin
    5.4e-14   52.5   0.0    1.3e-13   51.3   0.0    1.7  1  Autophagy_act_C  Autophagocytosis associated protein, active-


Domain annotation for each model (and alignments):
>> Autophagy_N  Autophagocytosis associated protein (Atg3), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.7   2.7e-43   1.6e-39       1     111 [.       2     142 ..       2     172 .. 0.65
   2 ?    0.7   1.5     0.075   4.5e+02      76     125 ..     266     287 ..     244     312 .. 0.46

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 2.7e-43
                  ...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXX........... CS
  Autophagy_N   1 lkstlssvreyltpvlkeSkFretGvitpeeFvaAGDyLvhkfptWsWasaees......krksyLPkdKqfLvtrnVpcykRakqleeekeeeeeii 92 
                  l+stls++reyltp++++S+F +tG+itpeeFv+AGDyLv +fp W+W++ +++      + +++LP++KqfLv+r+Vpc +Ra+++ + k+e++e +
   CCD25431.1   2 LRSTLSNWREYLTPITHKSTFLTTGQITPEEFVQAGDYLVNMFPIWKWNDDDNDinvnelSLRDFLPDEKQFLVIRKVPCLERADDIMDFKDERDENV 99 
                  699**********************************************775431222226799***********************55555555555 PP

                  ....XXX---B----XX............................X CS
  Autophagy_N  93 e...dedegwvkthkeekeee........................e 111
                  +   d+d++   +++e   ++                        +
   CCD25431.1 100 HvfdDDDDNEGGEEQE---DTvnmtgyttmqkldrktakaqgsnlM 142
                  5443222222222211...112323322222233333332222222 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.075
                  XXXXXX............XXX---B----XX....XXXXXXXXXXXXXXX CS
  Autophagy_N  76 kRakqleeekeeeeeiiededegwvkthkeekeeeeeevkdideeekeee 125
                  +R +q                             ++e+ ++++++e+eee
   CCD25431.1 266 RREEQN----------------------------HNEKNDELEKKEREEE 287
                  222222............................1222222222222221 PP

>> Autophagy_C  Autophagocytosis associated protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   1.1   8.2e-18   4.9e-14       2      25 .]     310     333 ..     309     333 .. 0.98

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 8.2e-18
  Autophagy_C   2 dqYLviFLKFisSViPTIEyDyTm 25 
                  dqYLv+FLKFi+SV+P IE+DyTm
   CCD25431.1 310 DQYLVVFLKFITSVTPSIEHDYTM 333
                  9**********************9 PP

>> Autophagy_act_C  Autophagocytosis associated protein, active-site domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   2.2e-17   1.3e-13       1      55 []     185     247 ..     185     247 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.3 bits;  conditional E-value: 2.2e-17
  Autophagy_act_C   1 ItYsktYqvPvlyfrlydedgtplsleelyed......sad.vtieehpl..lgvpwysiHPCk 55 
                      ItYs++Y+vP +y+ +++ dg pl++++++ed      s +  tie+ p+   ++p  siHPCk
       CCD25431.1 185 ITYSTSYRVPKMYIVGFNGDGLPLTPKQMFEDispdyrS-KtATIEKLPFfkNSIPSVSIHPCK 247
                      9*********************************99643.26********8788*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1615  (0.0900775); expected 358.6 (0.02)
Passed bias filter:                      718  (0.0400469); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2327.42
//
Query:       CCD25432.1  [L=709]
Description: hypothetical protein NDAI_0F01130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-35  121.2   1.2    8.1e-35  119.7   0.0    2.3  3  VHS         VHS domain
    4.4e-19   68.4   3.7    1.3e-18   66.8   3.7    1.8  1  FYVE        FYVE zinc finger
      5e-08   32.3   6.3     0.0001   22.0   2.4    2.9  2  UIM         Ubiquitin interaction motif
  ------ inclusion threshold ------
      0.042   13.8   0.1       0.17   11.9   0.1    2.1  1  STI1        STI1 domain
        2.9    7.8   5.9        5.4    6.9   5.9    1.4  1  zf_C2HC_14  C2HC Zing finger domain


Domain annotation for each model (and alignments):
>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   2.2e-38   8.1e-35       5     140 ..      44     185 ..      40     186 .. 0.95
   2 ?   -2.9   0.0       1.5   5.5e+03      30      49 ..     409     428 ..     398     444 .. 0.74
   3 ?   -1.5   0.4      0.57   2.1e+03     103     138 ..     443     478 ..     417     481 .. 0.70

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 2.2e-38
                 HHHHHHHHHHT-TT-SS-..-HHHHHHHHHHHHCSTCHHHHHHHHHHHHHT-..SSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHCTT CS
         VHS   5 sslekliekATdeslree..dlslileicDlinekeagpkeavrlikkkins..knphvallaLklldalvkNcGskfhleiaskeflnelvklilekk 99 
                 ++l+ li+kAT+es++++  dl    ei+D+i++k+  pk+a+r+++k+i +   np+++l++++l+++++kN+G++f+ e++s+ef+n++ k il+++
  CCD25432.1  44 AELDILINKATNESIPNGdlDLPTSFEISDIIRSKRIPPKDAMRCLQKRIANtyMNPNTQLSTWRLVEVCIKNGGTPFIVEVCSREFMNTFEKTILQNE 142
                 568999************7778889*************************99889****************************************9999 PP

                 TCHCS...HHHHHHHHHHHHHHHTTT-TTGHHHHHHHHHHHHT CS
         VHS 100 nsklak..vkkkvlelleeWadafknkpelkkisdvykllkrk 140
                   ++++  + + v++l  e++ +fkn+++l ++++v+++lk +
  CCD25432.1 143 DTDESDdeLGTLVKTLFMELYGTFKNDSQLGYVAKVHDKLKNR 185
                 98887789********************************976 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.5
                 HHHHHHCSTCHHHHHHHHHH CS
         VHS  30 icDlinekeagpkeavrlik 49 
                 ++ l+++ +++p  a+++++
  CCD25432.1 409 FATLVEKAKNNPNSAIDILE 428
                 56678888899999888886 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.57
                 CS.HHHHHHHHHHHHHHHTTT-TTGHHHHHHHHHHH CS
         VHS 103 lakvkkkvlelleeWadafknkpelkkisdvykllk 138
                 + k+++++ + +++++  ++ ++++++i ++y+ l 
  CCD25432.1 443 KPKLNNALNDKINKYNALIDMNSKISSIMNIYDSLL 478
                 235777777778888888888888888888888775 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   3.7   3.8e-22   1.3e-18       8      66 ..     213     270 ..     209     271 .. 0.93

  Alignments for each domain:
  == domain 1  score: 66.8 bits;  conditional E-value: 3.8e-22
                 --SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EEGGGTEEEEEEE-HHHHHHH CS
        FYVE   8 evkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvallekeaeeksvrvCkeClael 66 
                 e+++C+ C+kkFsll+rrhhCr CG ++C+++ss++++l+ +    ++vrvC++C++++
  CCD25432.1 213 ESDTCMVCSKKFSLLNRRHHCRSCGGIFCQEHSSHNIELP-DLGIYEPVRVCDNCFDDY 270
                 6799*********************************887.99*************975 PP

>> UIM  Ubiquitin interaction motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   2.4   2.9e-08    0.0001       1      17 []     304     320 ..     304     320 .. 0.95
   2 !   11.3   0.1   7.4e-05      0.27       2      17 .]     346     361 ..     345     361 .. 0.90

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 2.9e-08
         UIM   1 dEdedLqrAlalSlqEa 17 
                 +Ede+L+rA++lSl+Ea
  CCD25432.1 304 EEDEQLKRAIELSLKEA 320
                 7**************95 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 7.4e-05
         UIM   2 EdedLqrAlalSlqEa 17 
                  d dL++A++ Sl E+
  CCD25432.1 346 NDPDLKAAIEASLRES 361
                 599**********995 PP

>> STI1  STI1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   4.6e-05      0.17      24      55 .]     410     441 ..     408     441 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.6e-05
        STI1  24 vakleeiqsNPqalqqymsDprimtvlsvLmg 55 
                    +e+ ++NP+++   + D r ++  +++m+
  CCD25432.1 410 ATLVEKAKNNPNSAIDILEDTRLQKLYQKIMS 441
                 5678999***********************95 PP

>> zf_C2HC_14  C2HC Zing finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.9    0.0015       5.4       6      26 ..     216     236 ..     213     237 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0015
  zf_C2HC_14   6 nCkgCekqVcLSkMRaHiatC 26 
                 +C+ C+k++ L   R+H ++C
  CCD25432.1 216 TCMVCSKKFSLLNRRHHCRSC 236
                 8******************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2637  (0.14708); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 4559.16
//
Query:       CCD25433.1  [L=305]
Description: hypothetical protein NDAI_0F01140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.083   12.8   0.1       0.21   11.5   0.1    1.6  1  DUF4488   Domain of unknown function (DUF4488)


Domain annotation for each model (and alignments):
>> DUF4488  Domain of unknown function (DUF4488)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   1.2e-05      0.21      47      97 ..      66     120 ..      50     132 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.2e-05
     DUF4488  47 gasiiigyGeYelksdsvyvEsveksv....hlpqlegkknelkfelkddnllvl 97 
                  a+ii g+G++ +k+   +v  ++++      l +++ +kn++ ++l++  ++++
  CCD25433.1  66 LATIINGNGTWDMKETLPIVKEINENFehllVLESMNPQKNNIAVRLQKGTIIMM 120
                 5679***********99888888877641115678999**********8886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1079  (0.0601818); expected 358.6 (0.02)
Passed bias filter:                      504  (0.0281109); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 2114.61
//
Query:       CCD25434.1  [L=566]
Description: hypothetical protein NDAI_0F01150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.9e-40  136.2   0.6    1.4e-39  134.8   0.0    2.1  2  Cyclin_N    Cyclin, N-terminal domain
     0.0013   18.7   0.4     0.0036   17.3   0.4    1.6  1  SP24        Putative virion membrane protein of plant and ins
  ------ inclusion threshold ------
        6.2    7.4   8.5         26    5.5   1.4    2.8  2  DUF1053     Domain of Unknown Function (DUF1053)


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.8   0.0   2.3e-43   1.4e-39       1     127 []      38     191 ..      38     191 .. 0.97
   2 ?   -2.5   0.6      0.68     4e+03      12      28 ..     471     487 ..     463     501 .. 0.52

  Alignments for each domain:
  == domain 1  score: 134.8 bits;  conditional E-value: 2.3e-43
                 HHHHHHHHHHCHTS-STTCTTCTSSS-H.HHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHH........... CS
    Cyclin_N   1 dilknlieqelkflpkpdyldqqpelnp.emRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKv........... 87 
                 di++n i+q+ kf+p ++++dqqpe++p e+R+++i++l+e+++ +++t+ ++f +v+++dR++sk+ v kd+ +lv atcL+lAaK+           
  CCD25434.1  38 DISSNAIAQSSKFKPITKLIDQQPEMSPqETRSTIITFLFELSVMTRVTNGIFFQSVRLYDRYCSKRVVLKDQSKLVIATCLWLAAKTwggcnhiinnv 136
                 7999*********************************************************************************************** PP

                 ............HSSS---HHHHHHHTTT...SS-HHHHHHHHHHHHHHTTT--- CS
    Cyclin_N  88 ............eeisppkledlvyitde...afteeeilemErliLetLnfdls 127
                             +++++p+l++lv+++++    f+e+++++mE++iL tLn+d++
  CCD25434.1 137 ivptggrfygpnPRARIPRLSELVHYCNGineGFDESMFCQMEMHILATLNWDIC 191
                 ***************************65556*********************96 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.68
                 HTS-STTCTTCTSSS-H CS
    Cyclin_N  12 kflpkpdyldqqpelnp 28 
                 ++lp++++ +qq++ ++
  CCD25434.1 471 NSLPNNQMHMQQQQQQQ 487
                 55555555533333222 PP

>> SP24  Putative virion membrane protein of plant and insect virus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.4   6.1e-07    0.0036      26      73 ..     310     356 ..     303     358 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 6.1e-07
        SP24  26 ksvlgkfltkkqtknsll.kwvkenilkfigllvfiPvildapkkervv 73 
                 +s+++kf   +q++ns+l ++v++n  ++ +l +fi +i++ap++ + v
  CCD25434.1 310 HSIINKFT--NQEQNSFLmTPVTNNTKQIQLLNIFINAIINAPSSLTQV 356
                 89******..66677766599**********************998765 PP

>> DUF1053  Domain of Unknown Function (DUF1053)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.4    0.0043        26      30      72 ..     245     286 ..     219     302 .. 0.63
   2 ?    5.0   0.9    0.0061        37      13      51 ..     455     493 ..     447     508 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0043
     DUF1053  30 eiplkksklqdkkersasekarleeelderleqaIdglsskkl 72 
                    + + k +++++ s ++++ l+ee de+l+  I++++ kk 
  CCD25434.1 245 TTTAMDAKCNNNNDSSSTDVNALDEE-DEELKTKIQLINLKKF 286
                 22223333344566666677666555.************9986 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0061
     DUF1053  13 Fanlnhrdsvsseetrieiplkksklqdkkersasekar 51 
                 F++++++ + +s+   +++p++++++q++++++++++++
  CCD25434.1 455 FNKMKNNSACTSSLSVNSLPNNQMHMQQQQQQQQQQQQS 493
                 666777777777777789999999998777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2474  (0.137989); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 3961.46
//
Query:       CCD25435.1  [L=501]
Description: hypothetical protein NDAI_0F01160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-57  194.7  28.3    1.3e-57  194.7  28.3    3.5  4  BBP1_C          Spindle pole body component BBP1, C-terminal
    9.7e-47  159.6  10.2    9.7e-47  159.6  10.2    3.1  2  BBP1_N          Spindle pole body component BBP1, Mps2-bindin
     0.0088   16.6   1.4      0.048   14.2   1.4    2.3  1  VP4_2           Viral protein VP4 subunit
  ------ inclusion threshold ------
       0.24   11.3   3.2       0.19   11.7   0.5    2.4  2  Pox_A_type_inc  Viral A-type inclusion protein repeat


Domain annotation for each model (and alignments):
>> BBP1_C  Spindle pole body component BBP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       1.1     5e+03     156     175 ..      49      68 ..      33      88 .. 0.55
   2 !    4.4   3.2    0.0064        29      25      54 ..     105     134 ..      95     146 .. 0.82
   3 ?   -2.5   2.8      0.87   3.9e+03     145     184 ..     157     195 ..     144     239 .. 0.54
   4 !  194.7  28.3     3e-61   1.3e-57       1     187 [.     278     489 ..     278     493 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
      BBP1_C 156 dtssssnafstseyrkkeel 175
                 d+++ +n+ ++++ +k+ e+
  CCD25435.1  49 DDTNYNNMNHHRRMNKTRES 68 
                 33444444444444444332 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0064
      BBP1_C  25 kdlrerkeqvkkqeesykkkYeelraeLin 54 
                 ++++ ++++ ++q  ++  kY+++r+ L++
  CCD25435.1 105 NNMQLQQQEQQQQRYNHNTKYNDIRNSLMS 134
                 5567778888888888899*******9986 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.87
      BBP1_C 145 rqllereneikdtssssnafstseyrkkeelsskden..qsl 184
                 +ql+++++  +++s + ++f+ ++ r+k   ss+++n  q +
  CCD25435.1 157 HQLYNHDED-PPNSEPTDTFQWRNNRSK--ISSNNNNhrQDM 195
                 555555433.444444445544443333..212222211222 PP

  == domain 4  score: 194.7 bits;  conditional E-value: 3e-61
      BBP1_C   1 dytkeYlelldkldkNsreLedlkkdlrerkeqvkkqeesykkkYeelraeLinelkqskklydnYykLysKYqeLkkis....kesl....dlqskia 91 
                 +y+keY+elld++++N+r+L++++kdl+er+++v++qee++++kY++lr e+i++lkq+kkl+d+Y+kL+sKYq+Lkkis    ++++    dlq +++
  CCD25435.1 278 NYVKEYQELLDEICLNTRSLHLIDKDLQERDQFVQLQEEAFQDKYNSLRLEFISQLKQMKKLSDKYFKLLSKYQTLKKISldaeNSNDeqinDLQGQLT 376
                 7*******************************************************************************988733336678******* PP

      BBP1_C  92 nlekqlvdqaiekdreikkleeklldlelrnkeleekreidkikYesrikdLerqllereneik..................dtssssnafstseyrkk 172
                 +l+k++  q+++++r++ +++++ll+++lr++e++  re+d++kYes+i+dLerqlle +++i+                  dts+ss+a+st++ + k
  CCD25435.1 377 HLKKSI--QFANDERRNLTRDNDLLSDRLRDSEIQ--RENDQFKYESKIRDLERQLLEVRTRIPeqdhyyynnysnnyndtlDTSISSPAMSTRRRN-K 470
                 ******..***************************..*********************************************************955.4 PP

      BBP1_C 173 ...eelsskden.qsldtq 187
                    e+l + +en qs++++
  CCD25435.1 471 fnmEDLGTGTENrQSIEDI 489
                 4889999*****9999987 PP

>> BBP1_N  Spindle pole body component BBP1, Mps2-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.6  10.2   2.2e-50   9.7e-47       2     152 .]      24     217 ..      23     217 .. 0.91
   2 ?   -8.2  14.9         4   1.8e+04      28      75 ..     356     407 ..     278     491 .. 0.54

  Alignments for each domain:
  == domain 1  score: 159.6 bits;  conditional E-value: 2.2e-50
      BBP1_N   2 gisglfkWTkDALFGskvsPsrkykefaqDDTNyklk....kkeknkeksseesrsRsnSws.......gldssfykkydLLed.......seeeeqd. 81 
                 g+sglfkWT+DALFG+k++P++    ++qDDTNy+      +++k++e+  +e ++RsnSw+       gldssfy+kydLL++       ++e++q+ 
  CCD25435.1  24 GNSGLFKWTIDALFGPKKEPHM----LSQDDTNYNNMnhhrRMNKTRESPLTELKTRSNSWDgsslsnlGLDSSFYRKYDLLSPsnnmqlqQQEQQQQr 118
                 899*******************....********94478888999***************************************898888644444448 PP

      BBP1_N  82 ...dskrkkklesLlspvelkpkevsne....................ankeptDTFankknnnrskaesld.......deaikfkspkkddpllskLF 150
                    ++k+++ ++sL+sp++l+p++v+ne                    +n+eptDTF+++  nnrsk++s++       d++i+f++pk++d+llskLF
  CCD25435.1 119 ynhNTKYNDIRNSLMSPIHLRPSMVTNEqqknensllrhqlynhdedpPNSEPTDTFQWR--NNRSKISSNNnnhrqdmDNDIPFRPPKDNDTLLSKLF 215
                 99999**********************99*******************************..5555555555558999999****************** PP

      BBP1_N 151 kk 152
                 +k
  CCD25435.1 216 GK 217
                 97 PP

  == domain 2  score: -8.2 bits;  conditional E-value: 4
      BBP1_N  28 faqDDTNyklkkkeknkeksseesrsRsnSws.gldssfykkydLLed.....s 75 
                 ++ D  N + +  + n+ + + ++  +s  +     +++ + +dLL+d     +
  CCD25435.1 356 ISLDAENSNDE--QINDLQGQLTHLKKSIQFAnDERRNLTRDNDLLSDrlrdsE 407
                 33333333311..11111111222222222222344555666666666555552 PP

>> VP4_2  Viral protein VP4 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   1.4   1.1e-05     0.048      22      50 ..     442     470 ..     439     490 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
       VP4_2  22 innyysqsyqdsvDlqlgdnaissgesea 50 
                  +n ys++y+d++D+ + + a+s+   + 
  CCD25435.1 442 YYNNYSNNYNDTLDTSISSPAMSTRRRNK 470
                 5999*******************987664 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1         2   9.1e+03       7      12 ..     181     186 ..     180     186 .. 0.87
   2 ?   11.7   0.5   4.2e-05      0.19       8      17 ..     419     428 ..     416     433 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2
  Pox_A_type_inc   7 RsRIsD 12 
                     Rs+Is+
      CCD25435.1 181 RSKISS 186
                     9***96 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.2e-05
  Pox_A_type_inc   8 sRIsDLErqL 17 
                     s+I+DLErqL
      CCD25435.1 419 SKIRDLERQL 428
                     8********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1737  (0.0968821); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 3262.60
//
Query:       CCD25436.1  [L=510]
Description: hypothetical protein NDAI_0F01170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-76  256.8   1.0    5.4e-76  255.4   1.0    1.7  1  SAGA-Tad1  Transcriptional regulator of RNA polII, SAGA, subu


Domain annotation for each model (and alignments):
>> SAGA-Tad1  Transcriptional regulator of RNA polII, SAGA, subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4   1.0     3e-80   5.4e-76       3     235 .]      79     374 ..      77     374 .. 0.94

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 3e-80
   SAGA-Tad1   3 nsRidleelkeqlkkkLgperwekYfellsrFlsgklskkEldklvdriLgre.......................................nlhLHNq 62 
                 n+R+dl++++e+++++Lg+ +w kY++lls+F++gkls+kEl+++++ i+++                                        +++LHNq
  CCD25436.1  79 NKRLDLSPMIEKFTSILGRPNWIKYAQLLSLFILGKLSRKELSRELEFIFNSVgihnvssssnkklhidiatiagdtlslkrqrkrlhnkriLTRLHNQ 177
                 89*************************************************99********************************************** PP

   SAGA-Tad1  63 LllsIlkNalrespd.clakt.....ppsatakkkks...........slkkspkksrsgdsqeerlkkrvmslpprdrkrlkaitkeag........v 136
                 Lll++l+N+l++sp  ++ +        s++ +   s           s++k++k+s++++sq+e +kk+v slp+ dr+rlk itk+ag        v
  CCD25436.1 178 LLLGVLTNSLKDSPLsKKGSRfgfqnA-SSS-S---SsssgtnvgisaSTNKNMKRSNKTSSQIEIYKKIVLSLPIADRNRLKLITKDAGkqgfiycsV 271
                 ***************655555776431.222.1...123457899***99**************************************9999**99998 PP

   SAGA-Tad1 137 l.aeesskpkisvvseeetekrekennsk...ewsqeirspvaaPLgsesgelpdtdsLrkRmekiaeeeGLvggvsadcaellnlaldvyLKnliesc 231
                 l ++++  pki++vse+et kr+k+nn k   ewsq+i++++++PL++++++lpd+dsL+ +m++i++e+GLvg+v+++c+++l+++ld+yLKn+ie +
  CCD25436.1 272 LqSRLNIVPKIPIVSEPETLKRIKSNNLKtplEWSQDIMNGFNTPLCTDNYSLPDVDSLYLKMTGISREHGLVGNVDTRCIDILMMGLDHYLKNIIEFT 370
                 88999********************************************************************************************** PP

   SAGA-Tad1 232 idlv 235
                 id+v
  CCD25436.1 371 IDSV 374
                 *986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3695.89
//
Query:       CCD25437.1  [L=639]
Description: hypothetical protein NDAI_0F01180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-11   44.3   1.5    1.7e-11   44.3   1.5    4.4  5  Microtub_bd  Microtubule binding


Domain annotation for each model (and alignments):
>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2      0.29   5.2e+03      53      77 ..      45      69 ..      13      78 .. 0.56
   2 ?   -1.7   0.1      0.14   2.5e+03     112     148 ..     189     229 ..     176     230 .. 0.59
   3 ?   -2.1   0.0      0.19   3.3e+03     109     139 ..     242     272 ..     231     277 .. 0.74
   4 !   44.3   1.5   9.6e-16   1.7e-11       3      91 ..     326     444 ..     324     496 .. 0.75
   5 ?   -1.3   0.1      0.11   1.9e+03      79      95 ..     560     577 ..     502     626 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.29
                 E-SEEEECTTHCCCCCCCCHHHHHH CS
  Microtub_bd 53 sFdrvfeseseqeevfeeisqlvqs 77
                 ++ ++ ++ + q ++++ ++ +++ 
   CCD25437.1 45 NYKKLATQRKIQRQLINKVKIYHEK 69
                 3444445555555555555555554 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.14
                  CHHHHHHHHHHCCTSCCCCEEEEEE....EEEEESS-EEET CS
  Microtub_bd 112 raveeifetiselkekgwkyeielq....fveiynekvqDl 148
                  ++ ++i+  + e+++k  +y+ +lq      +++n+++ D+
   CCD25437.1 189 QLQDQIIGLTMENENKCNQYNSTLQknfnKFKLENNSIDDI 229
                  55666666666666666666655441111456667776665 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.19
                  T-HCHHHHHHHHHHCCTSCCCCEEEEEEEEE CS
  Microtub_bd 109 mipraveeifetiselkekgwkyeielqfve 139
                  ++ +  ++++++i+ ++++  +y++++ ++e
   CCD25437.1 242 TLLNHESKLLNEIQLNETEINQYKLQIMVIE 272
                  5556667888888888888888888877665 PP

  == domain 4  score: 44.3 bits;  conditional E-value: 9.6e-16
                  HHHHHHHHCHHHHHHHCTB-EEEEEEECCCS-T............EEEETTT......TTTEEEE-SEEEECTT...............HCCCCCCCC CS
  Microtub_bd   3 keetlRrkleNtiqelkGniRvfarvrpelesek...........akikfpe...eekkkkkefsFdrvfeses...............eqeevfeei 71 
                   ++ +R+kleN+i+elkG iR+fa+++ + + ++            ki++++   +++ ++ ++ F+r++ +++               e+ ++ +e+
   CCD25437.1 326 LQSLRRKKLENSIDELKGFIRTFAYIDSSASASTsasssvpspshWKIDYHDnlvHNDLENISYPFTRLILPHNmattnindnnndnciEKTFIQNEF 423
                  56789**********************99988666677777776666666658997788999999999886655566666666666777788999*** PP

                  HHHHHHHH.TT--EEEEEEES CS
  Microtub_bd  72 sqlvqsal.dgynvcifaygq 91 
                  + +++++l +  n+++f+++ 
   CCD25437.1 424 QIFIDMCLnQLENFNLFSISI 444
                  ********8889******986 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.11
                  H.TT--EEEEEEES.... CS
  Microtub_bd  79 l.dgynvcifaygqTGsG 95 
                  l +g n+  f++ +TGs 
   CCD25437.1 560 LvHGLNIFKFTIKKTGSI 577
                  445555555666666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2490  (0.138881); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.44
# Mc/sec: 4371.30
//
Query:       CCD25438.1  [L=180]
Description: hypothetical protein NDAI_0F01190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-12   47.6   1.5    1.6e-12   47.2   1.5    1.2  1  Fer2      2Fe-2S iron-sulfur cluster binding domain


Domain annotation for each model (and alignments):
>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   1.5   8.7e-17   1.6e-12       3      77 ..      76     156 ..      74     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 47.2 bits;  conditional E-value: 8.7e-17
                 TTTEEEEEEEETTTHBHHHHHHHTTTTTSTTSSSSSS.SSTTEEEEEESCE...CTTSSSSTHHHHHTTEE........EEGGGSEE CS
        Fer2   3 idgkevevevadgettlldaaeenggidipysCgggg.CgtClvevlegev...qsdetelegeeldegkl........rlaCqtiv 77 
                 +dg++ +++v ++et lld+a+   ++d + +Cgg++ C+tC+v v+  ++    ++++++e+++ld   l        rl Cq+++
  CCD25438.1  76 KDGEQKTFDVCEDET-LLDIAQGH-DLDMEGACGGSCaCSTCHVIVD-PDYydaLPEPEDDENDMLD---LapgltetsRLGCQVKM 156
                 589************.*****965.*******************655.7773432224444444443...366799********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       429  (0.0239277); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.21s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1405.94
//
Query:       CCD25439.1  [L=442]
Description: hypothetical protein NDAI_0F01200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      242  (0.0134977); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.29s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 2985.92
//
Query:       CCD25440.1  [L=1058]
Description: hypothetical protein NDAI_0F01210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-47  161.5   0.3    2.2e-47  161.5   0.3    3.9  3  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.2     0.051   9.2e+02      24      67 ..     122     168 ..     102     177 .. 0.56
   2 !  161.5   0.3   1.2e-51   2.2e-47       2     215 .]     547     742 ..     546     742 .. 0.90
   3 !    2.3   2.0    0.0061   1.1e+02       9      66 ..     895     952 ..     889     965 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.051
  RabGAP-TBC  24 sekkqeksekeksklekseeske.lsqIkkDvprtfp..esesfknk 67 
                 ++++ ++  +ek++ e+ e+ +     I++Dv  t +  ++e+ +++
  CCD25440.1 122 KDENLNEIDSEKEESETIEDTSAgSPIINEDVTSTAKqdDTEIGSQD 168
                 333333333334444444444555899********995322444444 PP

  == domain 2  score: 161.5 bits;  conditional E-value: 1.2e-51
  RabGAP-TBC   2 elRgevWklllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevgYcqGmndivapl 100
                 ++Rg +W+l+++++              k+ ++   +  ++es+++  I++D++rt         ++  ++L++i+k+ys+y+p+vgY+qGm +i+ pl
  CCD25440.1 547 QIRGIIWQLISNSK-------------SKEIEDIYWTLLDTESPHEANIRRDLKRTNF-----IPNDRVESLFNIIKVYSVYDPDVGYTQGMAFIATPL 627
                 79*********994.............34444455555666678899*********55.....5677899***************************** PP

  RabGAP-TBC 101 llvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lllegekfv 198
                 l+++  e e F ++  L+++y+lrd++ +++pgl  +l++ ++ll+++ p+l++hl +eg+ ++++a++wflt f+++fp+e vlr +D +++eg++  
  CCD25440.1 628 LVNTRTEAEGFGLLIGLMKNYGLRDFFLPEMPGLMLMLYQYDRLLEENSPNLHNHLIREGIRSSMYATQWFLTFFAYKFPFEFVLRCFDiVFVEGIES- 725
                 *8888************************************************************************************9999***88. PP

  RabGAP-TBC 199 llrvalailklleeell 215
                 +l++a++++ ++++++l
  CCD25440.1 726 VLKFAVILMIKNQDKIL 742
                 89999988878888886 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.0061
  RabGAP-TBC   9 klllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfp.esesfkn 66 
                 + ll+ ++   +++  e k++ +e+ ++ +  +++s+  s++k+D+ rt++ + e  ++
  CCD25440.1 895 QMLLDENN-DLKQNIIELKENLEEEIRKRNLPNPDSQLPSDLKQDLARTMDrNLEVMNE 952
                 66666654.33444455666667777777888888889************943233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1058 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2300  (0.128284); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.35s 00:00:01.29 Elapsed: 00:00:00.48
# Mc/sec: 6618.78
//
Query:       CCD25441.1  [L=960]
Description: hypothetical protein NDAI_0F01220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-22   80.2   6.2    3.3e-22   78.8   6.2    1.8  1  Fungal_trans  Fungal specific transcription factor domain
      2e-07   31.0  18.0    3.5e-07   30.2  18.0    1.4  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
    3.6e-06   27.0   0.1      9e-06   25.8   0.1    1.7  1  Gal4_dimer    Gal4-like dimerisation domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   6.2   5.5e-26   3.3e-22       2     231 ..     292     499 ..     291     542 .. 0.82

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 5.5e-26
  Fungal_trans   2 drffsnfhpqfpilhkpsflpktssenssksayaspllllailalGalfsesetkesnssltsesqefiafplraeilihedfsspssslwilqsLl 98 
                   d++f+nfhp +pi+  ++fl  ++++  s+s+++ +ll++++la+Ga ++e ++   ++   +++        + + ++  + +  s s+  + ++ 
    CCD25441.1 292 DSYFTNFHPYCPIIYSDTFLMIYNNQIASDSKEQWQLLFNTVLAIGAWCLEGDSTDIDQFYYNNA--------KSHLTS--QVFE-SGSISNVIAFH 377
                   89*********************9999999999999999***********999887644444433........333333..3333.444899999** PP

  Fungal_trans  99 llelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrpp..llddsqinlpLPcddddlw 193
                   ll+ y +++++ + + ++hg  +rla slgLh++ +           e  +e+rrR+ww ++  + +++l +Grp+  lld ++i ++LP +++d +
    CCD25441.1 378 LLSKYIQWREKPNTAFNYHGHSIRLALSLGLHKDLPTAP------GNELIKEQRRRIWWVIYTHEFHLSLSYGRPFhiLLDWHEIGIELPQNFQDNN 468
                   *************************************99......677779*************************977***************555 PP

  Fungal_trans 194 esddaseetlvetklsneeksrkiasfllaLkkilski 231
                   + ++ s+  l +       + + i+s+l+  +k+ + +
    CCD25441.1 469 MNYN-STTSLGG------LQDMTIYSGLIETSKLYQFF 499
                   5554.4444444......36677777777777766654 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2  18.0   5.9e-11   3.5e-07       1      40 []      10      48 ..      10      48 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 5.9e-11
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCEE CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskrs 40
                +aCd Cr kK KC+++kP+C++C k+++eC  ys + krs
  CCD25441.1 10 QACDICRIKKLKCSREKPKCAKCMKNGWECC-YSPKAKRS 48
                69*****************************.99998886 PP

>> Gal4_dimer  Gal4-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.1   1.5e-09     9e-06       1      44 [.      51     110 ..      51     117 .. 0.88

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.5e-09
  Gal4_dimer   1 TRAhLTeVEsRvtqLEqlLrrllpe................eDiDnlLknkhnnflkeil 44 
                 TRAhLT VE  +++LE l+  l+                   DiD     ++ ++l  il
  CCD25441.1  51 TRAHLTRVEDKLSKLENLFNALFIGkestptntrsmngynvDDIDDTEHTDSSEILNSIL 110
                 9**********************9989999999999999998888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (960 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.45
# Mc/sec: 6460.19
//
Query:       CCD25442.1  [L=1110]
Description: hypothetical protein NDAI_0F01230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-21   77.4   0.0    2.1e-21   76.5   0.0    1.5  1  DEAD          DEAD/DEAH box helicase
    3.8e-21   75.0   0.3    1.7e-20   72.9   0.2    2.0  2  RQC           RQC domain
    8.4e-19   68.0   9.7    1.9e-15   57.2   0.0    3.8  5  Helicase_C    Helicase conserved C-terminal domain
    7.9e-15   55.3   8.1    7.9e-15   55.3   8.1    2.4  2  RecQ_Zn_bind  RecQ zinc-binding
    1.3e-06   28.5   0.0    4.3e-06   26.8   0.0    1.9  1  ResIII        Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.035   13.4   0.2       0.29   10.4   0.0    2.2  2  SecA_DEAD     SecA DEAD-like domain
        1.3    9.2   9.2         15    5.8   5.6    3.3  3  Cys_box       Anosmin cysteine rich domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   8.1e-25   2.1e-21       2     173 ..     477     646 ..     476     649 .. 0.82

  Alignments for each domain:
  == domain 1  score: 76.5 bits;  conditional E-value: 8.1e-25
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH.HTT.C CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx.x RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl.dng.v 98 
                 + Q eai+ +l g+dv+v ++TG GK+l++++p++ +     gkt+   ++++P+ +L+++++++l  +  ++  ++ +  g +++r+q   l ++g +
  CCD25442.1 477 PNQLEAINSTLIGKDVFVLMPTGGGKSLCYQLPAIVKS----GKTKGTSIVISPLISLMQDQVEHLLDLNIKA--SMISSKGTTQQRKQTFSLfSQGkL 569
                 78*********************************444....99999*******************9999974..45555777777777777744446* PP

                 SEEEEEHHHHHHHH.....HCTSSHCTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  99 divvgtpgrlddll.....stgklnlsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 d+++  p+++++        ++  +  ++  +++DEa++++++  +f++++++ l  +++ + + +    ++vl+AT+++ v
  CCD25442.1 570 DLIYISPEMIASSKqckrvIKKLYQEGNLARIIVDEAHCVSSWghDFRPDYKE-LYFFKSEYPKIP----MMVLTATANEHV 646
                 ***********98765554233345778888************9999*****9.566655556555....*******99766 PP

>> RQC  RQC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.89   2.3e+03      60      79 ..     581     600 ..     580     611 .. 0.78
   2 !   72.9   0.2   6.5e-24   1.7e-20       4     109 ..     878     990 ..     876     994 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.89
                 -HHHHHHHHHHHHHTTSEEE CS
         RQC  60 skkewrrlirqLiaegyLee 79 
                 s k+ +r+i++L +eg L+ 
  CCD25442.1 581 SSKQCKRVIKKLYQEGNLAR 600
                 57899***********9943 PP

  == domain 2  score: 72.9 bits;  conditional E-value: 6.5e-24
                 EEE-HHHHHHHHHHHHHT.TS-SBHHHHHHHHHT---CCCCCTTGGGSTTTTTTTTS-HHHHHHHHHHHHHTTSE.EEE......SSS.BEEE-CCGHH CS
         RQC   4 tvDvteeaqkilscvyrt.gqrfgaghivdvLrGsktkkirqlghdklstfGigkdlskkewrrlirqLiaegyL.eedve....eyg.vlkltekare 95 
                 + D+t  a++++ +v+++ ++ ++  +++++++Gs+t+ki q ghd+l+ +G gk ++k  +++++ +Li+e++L e+++     + + +++ + ++r+
  CCD25442.1 878 MEDITMIAKDVITLVQSIeNETVTSIYCQNLFKGSRTAKIIQAGHDNLEKHGTGKSINKAKIEKIFFHLISERILeEYSITnnggYANcYVRTGVNSRK 976
                 57****************779******************************************************87777799985667********** PP

                 HHTSSS--EEESHH CS
         RQC  96 vlkgeekvklreek 109
                 v++g  kvk++ ++
  CCD25442.1 977 VINGLLKVKMELTE 990
                 *********98765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   7.2e-06     0.018       7      73 ..     509     576 ..     502     589 .. 0.79
   2 !   57.2   0.0   7.3e-19   1.9e-15      11     110 ..     691     790 ..     681     791 .. 0.90
   3 ?   -3.4   0.1       4.8   1.2e+04      18      42 ..     832     859 ..     817     865 .. 0.69
   4 ?   -2.8   0.1         3   7.7e+03      15      75 ..     884     951 ..     870     973 .. 0.59
   5 ?   -2.2   0.1         2   5.1e+03      48      67 ..    1053    1072 ..    1049    1073 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.2e-06
                 HHHHHHTTTTSEEEEEESSHH.HHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEES CS
  Helicase_C   7 lellkleeeggkilifvntid.rlekvklllekkgikvavlhgelpqnereeileqfnkgesd.vLiat 73 
                  +++k+ + +g+++++++ i+ + ++v+ ll   +ik+ ++ ++ ++++r+++++ f +g+ d + i+ 
  CCD25442.1 509 PAIVKSGKTKGTSIVISPLISlMQDQVEHLLDL-NIKASMISSKGTTQQRKQTFSLFSQGKLDlIYISP 576
                 4445899999***********544447777555.5****************************554655 PP

  == domain 2  score: 57.2 bits;  conditional E-value: 7.3e-19
                 HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSS CS
  Helicase_C  11 kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgR 109
                 k +  ++  +i++++++++ekv l l++++i++ ++h+ +  +er  i +++++++ +v+ at + ++Gid  +v+++ +f +pr+++ y q  GR+gR
  CCD25442.1 691 KYHFTEQSGIIYCHSKNSCEKVALQLQNNQIRCGYYHAGMDPDERMMIQRDWQRNKLQVICATVAFGMGIDKSDVRFIYHFTVPRTLEGYYQETGRAGR 789
                 444456667***********988888999********************************************************************** PP

                 T CS
  Helicase_C 110 a 110
                  
  CCD25442.1 790 D 790
                 6 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 4.8
                 EEEEEESSHHHHHH...HHHHHHHTTST CS
  Helicase_C  18 kilifvntidrlek...vklllekkgik 42 
                 +++ ++++i+++ +   +++++e+++ +
  CCD25442.1 832 EVMKYCENIKECRRklvLSYFNEEFDRN 859
                 5677888888886566677776666555 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3
                 TTSEEEEEESSHH..HHHH...HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHHTTSSS.EEEESGG CS
  Helicase_C  15 eggkilifvntid..rlek...vklllekk.gikvavlhgelpqnereeileqfnkgesd.vLiatdv 75 
                 + ++++  v++i+  ++ +    +l++ ++ +  + + h +l++    +++++ + +++   Li+ ++
  CCD25442.1 884 IAKDVITLVQSIEneTVTSiycQNLFKGSRtAKIIQAGHDNLEKHGTGKSINKAKIEKIFfHLISERI 951
                 55677777777776533212323444333333333444555666666666666653333335555555 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 2
                  TTSTHHHHHHHHHHHHTTSS CS
  Helicase_C   48 gelpqnereeileqfnkges 67  
                  +  ++ ereei++q +++++
  CCD25442.1 1053 SGSNNGEREEIIKQIRQHQF 1072
                  5667889********98875 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       4.4   1.1e+04      34      45 ..     702     713 ..     693     715 .. 0.82
   2 !   55.3   8.1   3.1e-18   7.9e-15       2      66 .]     803     869 ..     802     869 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.4
  RecQ_Zn_bind  34 ycentteCrrkl 45 
                   yc+++++C +++
    CCD25442.1 702 YCHSKNSCEKVA 713
                   999999998876 PP

  == domain 2  score: 55.3 bits;  conditional E-value: 3.1e-18
  RecQ_Zn_bind   2 qDvsrlrrlieqs.eesekekeaelekleamlaycentteCrrkllleyFgeeaaeeeC.gnCDnCl 66 
                   +Dv+ ++++i+++ + ++ ++e++++kl+++++ycen +eCrrkl+l+yF+ee++++ C +nCDnC+
    CCD25442.1 803 KDVRAIQKMIQKDsSLDKISREKHFDKLQEVMKYCENIKECRRKLVLSYFNEEFDRNLChENCDNCK 869
                   7*********98876678899999***********************************888****6 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   1.7e-09   4.3e-06       4     169 ..     475     642 ..     473     644 .. 0.79

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 1.7e-09
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka.kekd 100
                 +r+ Q eai+++l  +     k +++ m+TG GK+l++ + +i +  k ++    +++ p +sl++   e++ ++  +a +  +k +++++k+  +  +
  CCD25442.1 475 FRPNQLEAINSTL--I----GKDVFVLMPTGGGKSLCYqLPAIVKSGKTKG--TSIVISPLISLMQDQVEHLLDLNIKASMISSKGTTQQRKQTfSLFS 565
                 7999999999998..4....58899************97666555555444..89***********************998755555555554458888 PP

                 ...-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS......TTTHHH...HHT---SEEEEEESS- CS
      ResIII 101 stnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.....kswrei...lekfkeavllglTATp 169
                 + + +++ ++ +++ ++++ ++  ++ +++++   ii+DEaH +++        ++e+   +  +++  ++ lTAT 
  CCD25442.1 566 QGKLDLIYISPEMIASSKQCKRVIKKLYQEGNLARIIVDEAHCVSSWghdfrPDYKELyffKSEYPKIPMMVLTATA 642
                 9999**************999*********************99986544443777765653334556666778875 PP

>> SecA_DEAD  SecA DEAD-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00011      0.29      75     166 ..     468     562 ..     379     609 .. 0.65
   2 ?    0.3   0.1      0.14   3.5e+02     211     270 ..     840     910 ..     802     914 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
                 x......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   SecA_DEAD  75 g......mrhydvQliGglvlhegkiaemkTGEGKtlvatlpaylnaltgkgvhvvtvndYLakrdaewmgpvyeflGlsvgvieseleseerreaYe 166
                         r+ +   i ++++ +   + m TG GK+l+  lpa++++ + kg  +v     L +  +++++++ + l ++ ++i+s+ ++++r+++++
  CCD25442.1 468 HtfklpgFRPNQLEAINSTLIGKDVFVLMPTGGGKSLCYQLPAIVKSGKTKGTSIVIS--PLISLMQDQVEHLLD-LNIKASMISSKGTTQQRKQTFS 562
                 2333333788888888899999999999*************************99864..366666666777665.5778888888888888888775 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.14
                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx........xxxxxxxxx..xxxxxxxxxxxxxxx RF
   SecA_DEAD 211 iDeArtpLiisgpaee.eselyeeakklvkeleeeed........akegveiee..esqtlatitlqnffr 270
                 i e r  L++s  +ee +++l++e  + +k+ ++           ak+ +++ +  e++t+ +i +qn+f+
  CCD25442.1 840 IKECRRKLVLSYFNEEfDRNLCHENCDNCKKCQDVVShmeditmiAKDVITLVQsiENETVTSIYCQNLFK 910
                 44566666666654444665555555555544442225566777788888764434899999999999997 PP

>> Cys_box  Anosmin cysteine rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.051   1.3e+02      18      44 ..     687     714 ..     683     742 .. 0.86
   2 ?   -1.6   0.0       1.2     3e+03      15      38 ..     802     825 ..     794     831 .. 0.75
   3 ?    5.8   5.6     0.006        15      23      65 ..     825     868 ..     816     882 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.051
     Cys_box  18 iaalfkhlqsngsLgWCqnhkqCsk.cl 44 
                 i a+  h+ ++  +++C+++  C k  l
  CCD25442.1 687 IDAIKYHFTEQSGIIYCHSKNSCEKvAL 714
                 778999999999***********99444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
     Cys_box  15 itriaalfkhlqsngsLgWCqnhk 38 
                 +  + a++k +q + sL+  + +k
  CCD25442.1 802 MKDVRAIQKMIQKDSSLDKISREK 825
                 457999999*******98766665 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.006
     Cys_box  23 khl.qsngsLgWCqnhkqCskclepCkeswelkkklcrelCekl 65 
                 kh+ + ++++++C+n k+C + l     + e  ++lc+e C+++
  CCD25442.1 825 KHFdKLQEVMKYCENIKECRRKLVLSYFNEEFDRNLCHENCDNC 868
                 555456799************99999999999*********954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       979  (0.0546043); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 7304.63
//
Query:       CCD25443.1  [L=524]
Description: hypothetical protein NDAI_0F01240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-10   40.6  10.8     0.0022   18.8   0.1    4.8  6  WD40         WD domain, G-beta repeat
     0.0028   17.9   4.3        3.7    7.9   0.0    4.7  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         2   1.8e+04       7      21 ..     118     132 ..     114     141 .. 0.65
   2 ?   -1.6   0.0      0.68   6.1e+03      22      37 ..     181     197 ..     162     198 .. 0.59
   3 !   11.3   0.2   5.7e-05      0.51       9      38 .]     254     277 ..     242     277 .. 0.71
   4 !   14.6   0.0   5.2e-06     0.047       7      38 .]     288     321 ..     282     321 .. 0.74
   5 !   18.8   0.1   2.5e-07    0.0022       2      38 .]     383     421 ..     382     421 .. 0.89
   6 ?   -2.7   0.1       1.6   1.4e+04      19      34 ..     434     448 ..     428     450 .. 0.62

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
                 EESSSSEEEEEEETT CS
        WD40   7 ltGHssvtslafspd 21 
                 ++ H +  +l++s d
  CCD25443.1 118 YDSHYPLFGLDWSVD 132
                 666755778877666 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.68
                 SSE...EEEEETTSEEEEE CS
        WD40  22 gaw...lasGsdDgtvriW 37 
                 ++    la+ s   ++riW
  CCD25443.1 181 HPKprkLAT-S-SESLRIW 197
                 333443664.6.7788888 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 5.7e-05
                 SS.SSE.EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssv.tslafspdgawlasGsdDgtvriWd 38 
                  H +++ t l        l+s+s D t+ iWd
  CCD25443.1 254 FHwNPIdTNL--------LISSSIDTTCIIWD 277
                 3545555555........78999********9 PP

  == domain 4  score: 14.6 bits;  conditional E-value: 5.2e-06
                 EESS.SSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawl.asGsdDgtvriWd 38 
                 l +H s v +++f   ++ l as++ Dg+vr++d
  CCD25443.1 288 LIAHdSEVFDVRFLTQSTQLfASCGGDGSVRVFD 321
                 779*777*9**977777776356655******98 PP

  == domain 5  score: 18.8 bits;  conditional E-value: 2.5e-07
                 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 +++ tl GH ss + ++++p  + ++ s+ dD+ v  Wd
  CCD25443.1 383 TPVLTLQGHsSSLNQIKWHPTERNILlSCADDCQVLYWD 421
                 57899****888************6449*99*******9 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 1.6
                 ETTSSEEEEEETTSEE CS
        WD40  19 spdgawlasGsdDgtv 34 
                 s +++ l s+sd++++
  CCD25443.1 434 STSNSTL-SSSDNQNI 448
                 5566666.56756666 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.2     0.069   6.2e+02      43      89 ..     126     177 ..     114     180 .. 0.61
   2 !    7.9   0.0   0.00041       3.7      40      85 ..     250     296 ..     244     303 .. 0.81
   3 ?   -0.5   0.0      0.17   1.5e+03      38      68 ..     292     323 ..     287     331 .. 0.72
   4 !    5.5   0.0    0.0024        22      29      67 ..     385     421 ..     363     450 .. 0.72
   5 ?   -0.1   0.0      0.13   1.2e+03      34      50 ..     463     479 ..     453     495 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.069
  ANAPC4_WD40  43 sLaWkpdgklLavaysd...gevrlldaesgkvvhs..lsvksekavtclgW 89 
                  +L W+ d+ +   +y++   ++++++++++  +      +++ + ++++++W
   CCD25443.1 126 GLDWSVDDFVALSSYKEdsrNKIQIIHSNDNLLTWDkiTECNVTYSISKMQW 177
                  5777777777666664322268999988876543221123333335788887 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.00041
  ANAPC4_WD40  40 evrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                   ++s++W+p d +lL  +  d+++ + d es + v++  ++++++v 
   CCD25443.1 250 PITSFHWNPiDTNLLISSSIDTTCIIWDLESSNYVKTQLIAHDSEVF 296
                  599*****945677888889*************99987777776665 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.17
  ANAPC4_WD40  38 dsevrsLaWkp.dgklLavaysdgevrlldae 68 
                  dsev ++++   + +l+a    dg+vr++d  
   CCD25443.1 292 DSEVFDVRFLTqSTQLFASCGGDGSVRVFDLR 323
                  66666666654045677888899****99976 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.0024
  ANAPC4_WD40  29 vwtleedkedsevrsLaWkpdgklLavaysdgevrllda 67 
                  v tl  ++++s+ ++++W+p ++ +  +++d    l+  
   CCD25443.1 385 VLTL--QGHSSSLNQIKWHPTERNILLSCADDCQVLYWD 421
                  5555..6888999**********9999999874444433 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.13
  ANAPC4_WD40  34 edkedsevrsLaWkpdg 50 
                  ++++++ev+++ W+p  
   CCD25443.1 463 TNNKNQEVNNIIWRPTQ 479
                  468999********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.56
# Mc/sec: 2832.66
//
Query:       CCD25444.1  [L=551]
Description: hypothetical protein NDAI_0F01250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      240  (0.0133861); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 3822.97
//
Query:       CCD25445.1  [L=277]
Description: hypothetical protein NDAI_0F01260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-15   56.9  13.1    3.7e-15   56.2  13.1    1.3  1  Rhomboid  Rhomboid family
  ------ inclusion threshold ------
      0.049   12.5   0.0      0.069   12.0   0.0    1.1  1  LpxB      Lipid-A-disaccharide synthetase


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2  13.1   4.1e-19   3.7e-15       6     143 ..      56     197 ..      51     202 .. 0.85

  Alignments for each domain:
  == domain 1  score: 56.2 bits;  conditional E-value: 4.1e-19
                 -TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S.....-EESSHHHHHHHHHHHHHHHHCCCCGS----H CS
    Rhomboid   6 elwrlltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaeses..plvGaSGaifgllgallvlvprnrkllrklii 102
                  + +l t+ ++H+++lHll+N++a++v  + +e+++G+ + +++  l +++ +++++++    +    ++GaSG++f++ g++++   r r +++++  
  CCD25445.1  56 TFSKLSTYPLIHLSLLHLLCNVFAIFVPLTIFETNHGTIYTGVILNLLAIFTGVFYCFAGTILYPnvSIAGASGWCFTFWGYFALQESRIRPRYENFAH 154
                 677899*****************************************999999999887665544559****************************999 PP

                 C........CCCCCCCCCCHHHCTSSSTTTHHHHHHHHHHHHHHHH CS
    Rhomboid 103 a.....llllllfillnlvlgllpraggvsnlAHlgGllaGlllgl 143
                 +     +++ +++++l ++  l+p+    s+ +H  Gl++G+l+g+
  CCD25445.1 155 IsglniPTVAVPIVMLFVIAFLVPG---SSFPGHALGLMFGYLMGW 197
                 9777764444444444444445555...5****************9 PP

>> LpxB  Lipid-A-disaccharide synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.6e-06     0.069     127     154 ..     212     239 ..     200     241 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.6e-06
                 HHHHHHH-SEEEESSHHHHHHHHHTT-- CS
        LpxB 127 akkiakytdlllaiLPfEkefyqkkgld 154
                 ++ki+k++d l+a++Pf   +y++ ++d
  CCD25445.1 212 IVKIEKVVDKLIALIPFGLTYYKEENMD 239
                 689********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       534  (0.0297841); expected 358.6 (0.02)
Passed bias filter:                      244  (0.0136092); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 2158.93
//
Query:       CCD25446.1  [L=474]
Description: hypothetical protein NDAI_0F01270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.5e-103  346.9   0.5   1.9e-103  346.5   0.1    1.4  2  DUF2075       Uncharacterized conserved protein (DUF2075)
    1.7e-08   34.8   0.3    6.3e-08   33.0   0.0    2.0  2  AAA_22        AAA domain
    0.00014   22.0   0.0       0.13   12.2   0.1    2.5  2  ResIII        Type III restriction enzyme, res subunit
    0.00031   21.2   0.0     0.0006   20.2   0.0    1.5  1  AAA           ATPase family associated with various cellular 
    0.00074   19.6   0.6      0.004   17.2   0.1    2.3  2  AAA_14        AAA domain
     0.0012   18.3   0.0     0.0023   17.4   0.0    1.5  1  TniB          Bacterial TniB protein
      0.002   18.5   0.0     0.0048   17.3   0.0    1.7  1  AAA_16        AAA ATPase domain
      0.005   16.6   0.0      0.055   13.2   0.0    2.2  1  AAA_30        AAA domain
     0.0058   15.5   0.0     0.0094   14.8   0.0    1.2  1  Adeno_IVa2    Adenovirus IVa2 protein
     0.0079   15.4   0.0      0.017   14.3   0.0    1.6  1  PIF1          PIF1-like helicase
  ------ inclusion threshold ------
      0.012   15.6   0.0      0.028   14.4   0.0    1.6  1  NACHT         NACHT domain
      0.035   14.5   0.0      0.078   13.3   0.0    1.6  1  AAA_19        AAA domain
       0.04   13.6   0.0        0.1   12.3   0.0    1.6  1  VirE          Virulence-associated protein E
      0.085   12.0   0.0       0.17   11.1   0.0    1.5  1  NB-ARC        NB-ARC domain
      0.095   12.5   0.0        1.1    9.0   0.0    2.2  2  YqcI_YcgG     YqcI/YcgG family
       0.11   11.6   0.1       0.17   10.9   0.1    1.2  1  T2SSE         Type II/IV secretion system protein
       0.11   12.2   1.2        3.7    7.3   0.0    2.9  3  AAA_11        AAA domain
       0.12   11.9   1.0       0.35   10.4   0.0    2.3  3  AAA_7         P-loop containing dynein motor region
       0.12   12.8   0.0        1.8    9.0   0.0    2.7  2  RNA_helicase  RNA helicase
       0.15   11.6   0.0       0.31   10.6   0.0    1.5  1  cobW          CobW/HypB/UreG, nucleotide-binding domain


Domain annotation for each model (and alignments):
>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       4.1   3.6e+03      85      99 ..      47      61 ..      13      72 .. 0.47
   2 !  346.5   0.1  2.2e-106  1.9e-103       2     363 .]      84     456 ..      83     456 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.1
     DUF2075 85 eepkedvvivDEAhr 99
                +++  ++ + DE +r
  CCD25446.1 47 MNKLGRIKLSDEQQR 61
                222223333444444 PP

  == domain 2  score: 346.5 bits;  conditional E-value: 2.2e-106
     DUF2075   2 avvlVtGvaGtGKtvvllnllael.........eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsefkkaeekkeepkedv 91 
                 a+++++G+aGtGK+v+l++l++e+         ++d +  t++yl+vNhp++l+l++++  +  ++ kk+++e++++++n+l+        k++ ++d+
  CCD25446.1  84 AIFVIEGDAGTGKSVILNSLFNEIqrlsvssldNEDVLVGTNNYLIVNHPEMLKLYHRICHQF-SYIKKSSLERPTTLVNTLQ--------KTNSMADI 173
                 79**********************9999999999999*************************9.*******************........******** PP

     DUF2075  92 vivDEAhrlltksdqaekqseenqlkelmkrakvvvalvDegQelntgeigteee......lkklakkleveleekvhLksqfRvaaseaviewvdall 184
                 +i+DEAh+l t +d+ +++++en+l +l+k  kv+v+++D++Q+l++g++++e+       lk ++++   + +e+++Lk+qfRvaa+e+v++w+d++ 
  CCD25446.1 174 IIIDEAHLLSTAKDAWKRFYGENHLSDLIKLGKVLVVVYDDKQALRMGSYWDENAkddgasLKWFYDQFLSDKKEWYNLKQQFRVAAPEDVLDWIDKIS 272
                 *****************************************************999******************************************* PP

     DUF2075 185 dgkkekakplss............qenfdirvfddleelkkalkeknkesgrsrlvatydakrlaekkkkkskekdvkieegd.fklpWnleekelkkp 270
                  ++ + ++p+s             + nfd+++++d+ e+++al+ kn+e g++r+++tyd++++        + kd+ +++gd fk++W+++ ++++ p
  CCD25446.1 273 IQGIIPEYPKSCllkeeegkrqydSLNFDFKIWEDCGEMYEALRVKNEEMGQCRMLSTYDFPYR-------LDGKDYFVTCGDnFKVRWDRYAPREQLP 364
                 *********98899********9999**************************************.......9*********999**********99999 PP

     DUF2075 271 waessdtleevgseytiQGleldyvgviiGpdlvyrkeedrikfrgkksedkeakskrkkkkeseekaqkllkNayrVLLtRGrkGlyiyaed 363
                 w+e+ +t++evgs+ytiQG++l+y+gvi+G+++ y+k++++ik+ ++ ++d+++++k+k+ k++++++qk+++N+++VLLtRG+kGly+ya d
  CCD25446.1 365 WSER-ETFDEVGSVYTIQGFDLNYAGVILGKSVSYDKANNCIKLLPEFYDDHAGFTKKKNIKNADSVKQKIIMNSINVLLTRGVKGLYVYAYD 456
                 9987.69************************************************************************************98 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       2.2   1.9e+03      74     111 ..      28      69 ..      12      82 .. 0.65
   2 !   33.0   0.0     7e-11   6.3e-08       4     115 ..      82     204 ..      78     220 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 2.2
      AAA_22  74 sseellealeqalrarav.....ielliiDEaqhlrseealee 111
                 +++  +++ +q l++ +       ++ + DE q+l ++++le+
  CCD25446.1  28 NKSTTMRRKQQDLSKESIamnklGRIKLSDEQQRL-RDRILEF 69 
                 55555555555555555555555556666777777.6666665 PP

  == domain 2  score: 33.0 bits;  conditional E-value: 7e-11
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevv.....fvtlpsstsskdllrellralglelkaerlsseellealeqalraraviellii 97 
                 +  i v+ G +GtGK++ l+ l+++ ++ +     + +v+     +  +++++   +l++++++++   +k+   s+e+  ++++   ++ ++  ++ii
  CCD25446.1  82 KPAIFVIEGDAGTGKSVILNSLFNEIQRLSVSSLDNEDVLvgtnnYLIVNHPE-MLKLYHRICHQFSYIKKS---SLERPTTLVNTLQKTNSMADIIII 176
                 567899*******************9755555556666666899666666666.99***********98888...666666666666666666789*** PP

      AAA_22  98 DEaqhlrs...........eealeeLrsl 115
                 DEa+ l s           e++l++L +l
  CCD25446.1 177 DEAHLL-StakdawkrfygENHLSDLIKL 204
                 ******.4453444455556666666544 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0061       5.5       2      50 ..      53     109 ..      52     146 .. 0.76
   2 !   12.2   0.1   0.00015      0.13     109     161 ..     147     202 ..     137     205 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0061
                 -EE-HHHHHHHHHHT..............TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII   2 lelreyQeeaienlleklks........krdkrglikmaTGtGKTlvaaklierllk 50 
                 ++l + Q++  +++le   +        k+   ++i+   GtGK++++ +l  ++++
  CCD25446.1  53 IKLSDEQQRLRDRILEFSRKnlgsfnddKKPAIFVIEGDAGTGKSVILNSLFNEIQR 109
                 678888999999998655557888975555557889999********9887776654 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00015
                 EEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.TTHHH..HHT---SE CS
      ResIII 109 ttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.swrei..lekfkeav 161
                 + i++ + +++++  ++ ++ ++  d+iiiDEaH l+ +k +w++    +++++ +
  CCD25446.1 147 SYIKKSSLERPTTLVNTLQKTNSMADIIIIDEAHLLSTAKdAWKRFygENHLSDLI 202
                 5555555556666788999999999*********9988744999865566666555 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   6.7e-07    0.0006       3      75 ..      88     187 ..      86     217 .. 0.70

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 6.7e-07
                 EESSTTSSHHHHHHHHHHHH................THEEEEEETTTCSSS..............STTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHH CS
         AAA   3 lyGppGtGKTllakavakel................gvefleisgsellsk..............yvgesekkirelfkeakekakpsilfiDEidala 71 
                 + G  GtGK+ + +++ +e+                  ++l ++ +e+l k                 e++  + +++++  ++a   i++iDE++ l 
  CCD25446.1  88 IEGDAGTGKSVILNSLFNEIqrlsvssldnedvlvgTNNYLIVNHPEML-KlyhrichqfsyikkSSLERPTTLVNTLQKTNSMA--DIIIIDEAHLLS 183
                 56999**************733333333322222222446667777777.47999999999766666667777777777777776..***********9 PP

                 HHHT CS
         AAA  72 ksrs 75 
                 ++++
  CCD25446.1 184 TAKD 187
                 9883 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       7.8     7e+03      15      47 ..      29      59 ..      29      75 .. 0.48
   2 !   17.2   0.1   4.5e-06     0.004       4      91 ..      85     197 ..      82     207 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.8
      AAA_14 15 KTtllkqlikellvkkesilyinldderdkkla 47
                K+t +++  ++l   kesi   +l + ++++++
  CCD25446.1 29 KSTTMRRKQQDLS--KESIAMNKLGRIKLSDEQ 59
                6666666655555..444444444444443322 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 4.5e-06
      AAA_14   4 ilvitGaRrvGKTtllkqlikell.............vkkesilyinldderd............kkladpekllelileklke.............ek 64 
                 i vi+G   +GK+++l+ l++e               v  +++l +n  +  +            kk++              e             + 
  CCD25446.1  85 IFVIEGDAGTGKSVILNSLFNEIQrlsvssldnedvlVGTNNYLIVNHPEMLKlyhrichqfsyiKKSS-L------------ErpttlvntlqktnSM 170
                 78999999************7766555555555555444444444444444336665555555432211.1............0222333333333357 PP

      AAA_14  65 ktylflDEiqevpewekalkslvdegk 91 
                   ++++DE++ ++++++a k+++ e++
  CCD25446.1 171 ADIIIIDEAHLLSTAKDAWKRFYGENH 197
                 789*******************98774 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.6e-06    0.0023      28     136 ..      76     187 ..      64     220 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 2.6e-06
        TniB  28 eypkrkrmpnlllvGdsnnGKtmivekFarlhppe..kdedaekvpvlvvq..appkpdekrlyaaiLealgaplkararvskleqqvlrllr.elkvr 121
                 ++ + k++   ++ Gd  +GK++i+++  ++ ++   ++ d+e v v + +  + ++p+  +ly++i +++++    + ++++ +  v +l + + ++ 
  CCD25446.1  76 SFNDDKKPAIFVIEGDAGTGKSVILNSLFNEIQRLsvSSLDNEDVLVGTNNylIVNHPEMLKLYHRICHQFSYIK--KSSLERPTTLVNTLQKtNSMAD 172
                 55666777778899************9776665541256677766555444337899999***********9874..5555555555544433135679 PP

        TniB 122 vLiiDEihnllagsa 136
                 ++iiDE h l +++ 
  CCD25446.1 173 IIIIDEAHLLSTAKD 187
                 ********8876654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.4e-06    0.0048      20      52 ..      78     119 ..      59     247 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 5.4e-06
      AAA_16  20 rsgrp.elvllsGesGvGKsslvrellralekd........g 52 
                 +++    + ++ G++G+GKs ++++l++++++         +
  CCD25446.1  78 NDDKKpAIFVIEGDAGTGKSVILNSLFNEIQRLsvssldneD 119
                 444443788999****************99976333333332 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   6.2e-05     0.055      20     103 ..      85     185 ..      80     217 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.2e-05
      AAA_30  20 vavltGpAGtGKttalkalreaweaag......grviglAptgkaAkvLaeelgieastiakllkrlk............grarlepg.tllivDEagm 99 
                 + v++G AGtGK+ +l++l + +++        ++v++ + +    +   e l +  +  +++ +  k              ++ ++  +++i+DEa +
  CCD25446.1  85 IFVIEGDAGTGKSVILNSLFNEIQRLSvssldnEDVLVGTNNYLIVNH-PEMLKLYHRICHQFSYIKKsslerpttlvntL-QKTNSMaDIIIIDEAHL 181
                 789**************9977666664456665333333333333322.22333333333333322223333334444331.22333337888888877 PP

      AAA_30 100 vdtk 103
                 ++t+
  CCD25446.1 182 LSTA 185
                 7765 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     1e-05    0.0094      64     108 ..      59     104 ..      34     114 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1e-05
  Adeno_IVa2  64 iekldakllr.ddGelsslnyglqPviGviyGPtGsGksqllrnli 108
                 +++l  ++l+ +  +l s+n +++P i vi G +G+Gks +l +l 
  CCD25446.1  59 QQRLRDRILEfSRKNLGSFNDDKKPAIFVIEGDAGTGKSVILNSLF 104
                 5566666665234589*************************99886 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.9e-05     0.017       2      49 ..      55     110 ..      54     192 .. 0.60

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.9e-05
                 --HHHHHHHHHH..............HCTS-EEEEESTTSSCHHHHHHHHHHCHCT CS
        PIF1   2 LneeQkkvfdaiie.......avln.ekgklfFvtGsgGtgKtflwkallkklrse 49 
                 L++eQ++  d+i+e       + ++ +k+ +f ++G +GtgK+ +++ l + ++  
  CCD25446.1  55 LSDEQQRLRDRILEfsrknlgSFNDdKKPAIFVIEGDAGTGKSVILNSLFNEIQRL 110
                 78888888888887222211123332566778889****************99863 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   3.1e-05     0.028       3     114 ..      86     203 ..      84     210 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.1e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCCCC.-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEE............EEEE CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpqga.fklvFflslrelsrsgnarsladllfsqlpepaapvsevwavllelperlL............lilD 88 
                  +++G+aG GK++ l +l  ++++    +    +++   +   +  + +++ l   ++ q+  +++ + e       +p+ l+            +i+D
  CCD25446.1  86 FVIEGDAGTGKSVILNSLFNEIQRLSVSSLDnEDVLVGTNNYLIVNHPEMLKLYHRICHQFSYIKKSSLE-------RPTTLVntlqktnsmadiIIID 177
                 589****************999987777766445555555555666666679999999999998888877.......3333333333333556779999 PP

                 -STT-SS-TCH.........HHHHHC CS
       NACHT  89 glDelvtdlgqkekqpvrtlLselir 114
                  +  l+t  +++++   ++ Ls+li+
  CCD25446.1 178 EAHLLSTAKDAWKRFYGENHLSDLIK 203
                 99999999999998888888888885 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.8e-05     0.078      11     115 ..      84     183 ..      77     222 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.8e-05
      AAA_19  11 kvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAa.kelrerlaalgaeatTiHrlalldfddlltealelleeaeeekklqeeelliv 108
                  ++++ + +GtGK+ +l+   +++++l   ++++  ++  t+     +  e l   ++  + +H+++ ++  +l+  + +l++  ++++ +  ++++i+
  CCD25446.1  84 AIFVIEGDAGTGKSVILNSLFNEIQRLSVSSLDNEDVLVGTNNYLiVNHPEML---KLYHRICHQFSYIKKSSLE-RPTTLVNTLQKTNSM--ADIIII 176
                 56788999******************998888665555555554404444444...7788889999988877777.777787877777777..77**** PP

      AAA_19 109 DEfqdvd 115
                 DE+  ++
  CCD25446.1 177 DEAHLLS 183
                 **97765 PP

>> VirE  Virulence-associated protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00012       0.1      50     109 ..      81     140 ..      77     156 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
        VirE  50 KfDfvlvLvGkqgsgKstfleklgeewftdslksvedkdavekiqgvliveiaEleasnk 109
                 K   + v++G+ g+gKs +l+ l +e    s++s +++d ++  +++liv+ +E+ +++ 
  CCD25446.1  81 KKPAIFVIEGDAGTGKSVILNSLFNEIQRLSVSSLDNEDVLVGTNNYLIVNHPEMLKLYH 140
                 667899*************************************************88764 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00019      0.17      15      47 ..      78     110 ..      67     177 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00019
                 TTTSCSEEEEEEESTTSSHHHHHHHHCCSHCCC CS
      NB-ARC  15 kdelqslvvalvGmgGvGKttlakqilnksdev 47 
                 +d+ +  +  + G +G GK++++++ +n+ + +
  CCD25446.1  78 NDDKKPAIFVIEGDAGTGKSVILNSLFNEIQRL 110
                 5666667999******************98766 PP

>> YqcI_YcgG  YqcI/YcgG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.41   3.7e+02      18      65 ..      39      86 ..      36     113 .. 0.79
   2 ?    9.0   0.0    0.0012       1.1     107     153 ..     330     375 ..     287     408 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.41
   YqcI_YcgG 18 alkkgelryafvesledeeaakelaaaLeeylelareskgkrtslvvf 65
                 l+k+++ ++ +++++ +++ ++l++ + e+ ++   s ++ ++ ++f
  CCD25446.1 39 DLSKESIAMNKLGRIKLSDEQQRLRDRILEFSRKNLGSFNDDKKPAIF 86
                57889999999********************99988777755444444 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0012
   YqcI_YcgG 107 dpewefsfaGepfFvvgltPayksrksRrlpvlvlvfqprevFeklr 153
                 + ++ + ++G+ +Fv++   + k r+ R++p+  l    re F+++ 
  CCD25446.1 330 TYDFPYRLDGKDYFVTCGDNF-KVRWDRYAPREQLPWSERETFDEVG 375
                 678999***********9988.*********************9875 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00019      0.17      91     155 ..      29     109 ..       2     122 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
       T2SSE  91 ealviRkksakeltlddlgaeealk...................ekiaevlrkavrerglilvsGgTgsGKttllyallkeink 155
                 ++ ++R +++++l+ + +++++  +                   +++ ++     ++  ++++ G  g+GK+++l++l +ei+ 
  CCD25446.1  29 KSTTMR-RKQQDLSKESIAMNKLGRiklsdeqqrlrdrilefsrKNLGSFNDD--KKPAIFVIEGDAGTGKSVILNSLFNEIQR 109
                 446666.3333344444444433333444466666655555553333333333..367899********************986 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.8      0.73   6.5e+02     101     179 ..      25      64 ..       5      82 .. 0.42
   2 ?    7.3   0.0    0.0041       3.7      18      51 ..      82     114 ..      54     136 .. 0.72
   3 ?    1.8   0.0      0.19   1.7e+02     210     226 ..     163     179 ..     157     181 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.73
      AAA_11 101 seavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelsk 179
                 ++++ks ++++k+++ +                                       ++s + ++  r kl++e+++l++
  CCD25446.1  25 GTKNKSTTMRRKQQDLS---------------------------------------KESIAMNKLGRIKLSDEQQRLRD 64 
                 22222222222222222.......................................22222222223333333333333 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0041
      AAA_11  18 e..itliqGPPGtgKTktivellsqllsrrkseeek 51 
                 +  i++i+G  GtgK+  + +l++++ +r   + + 
  CCD25446.1  82 KpaIFVIEGDAGTGKSVILNSLFNEI-QR--LSVSS 114
                 25599*******************99.33..22223 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.19
      AAA_11 210 lleklakkfdvviIDEA 226
                 +l+k +   d++iIDEA
  CCD25446.1 163 TLQKTNSMADIIIIDEA 179
                 456666678*******9 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       3.6   3.2e+03      36      65 ..      21      48 ..      12      60 .. 0.75
   2 ?   10.4   0.0   0.00039      0.35      33      59 ..      81     109 ..      71     117 .. 0.78
   3 ?   -2.4   0.1       3.2   2.8e+03     129     142 ..     243     255 ..     241     260 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.6
       AAA_7 36 vllvGptGtGKtviikdllkkldkekylsl 65
                +  +G++   K++++++  + l+ke++ ++
  CCD25446.1 21 MTATGTK--NKSTTMRRKQQDLSKESIAMN 48
                4555544..699999999999998887766 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00039
       AAA_7  33 kkpvllv..GptGtGKtviikdllkkldk 59 
                 kkp ++v  G++GtGK+vi+++l++++++
  CCD25446.1  81 KKPAIFVieGDAGTGKSVILNSLFNEIQR 109
                 555555545*************9999885 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.2
       AAA_7 129 lldyggwYdrkkle 142
                 l d++ wY++k+ +
  CCD25446.1 243 LSDKKEWYNLKQ-Q 255
                 67999*****98.3 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0     0.002       1.8       2      25 ..      87     110 ..      86     142 .. 0.81
   2 ?    0.0   0.0       1.3   1.1e+03      54      84 ..     304     335 ..     288     342 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.002
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkk 25 
                   ++ G++g+GKS++ ++L +++++ 
    CCD25446.1  87 VIEGDAGTGKSVILNSLFNEIQRL 110
                   689****************99853 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 1.3
  RNA_helicase  54 vidDfgqvkdee.npsdlaelirlvsstpypl 84 
                   +++D g++ +    +++++  +r+ s++ +p 
    CCD25446.1 304 IWEDCGEMYEALrVKNEEMGQCRMLSTYDFPY 335
                   78888888888877789999*******99986 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00035      0.31       2     119 ..      85     211 ..      84     257 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00035
                 EEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-SSCHCCCCCCHCCCT.EEEETTTTECCHCTT-HHHHHHHHHHHH.......TT-SEEEEEECT. CS
        cobW   2 vtvltGflGsGKTtLlnhllenraglklavivNefgevsiDaellretgveivelenGciCctlredllkelealeere.......erldviliEttG. 92 
                 ++v+ G  G+GK+ +ln+l ++ + l++  + Ne   v+ ++ l+ ++  e+++l    iC++ +     +le+  ++        +  d+i+i     
  CCD25446.1  85 IFVIEGDAGTGKSVILNSLFNEIQRLSVSSLDNEDVLVGTNNYLIVNH-PEMLKLYH-RICHQFSYIKKSSLERPTTLVntlqktnSMADIIIIDEAHl 181
                 57999*****************************9999**99999999.45888876.79998544433333333222233344447889999988884 PP

                 TTTHHHHHTT....SHHHHHCCCECEEEEEE CS
        cobW  93 laePapvaft....eeelksdltldavvavv 119
                 l++++   ++    e++l++ ++l  v++vv
  CCD25446.1 182 LSTAKDA-WKrfygENHLSDLIKLGKVLVVV 211
                 4445444.22244666666666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       773  (0.0431145); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.40
# Mc/sec: 3554.32
//
Query:       CCD25447.1  [L=239]
Description: hypothetical protein NDAI_0F01280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-28   97.5  11.8    9.2e-28   97.3  11.8    1.1  1  UAA       UAA transporter family
    1.7e-07   31.5  10.2    1.7e-07   31.5  10.2    2.3  2  EamA      EamA-like transporter family
     0.0036   16.7   6.5     0.0036   16.7   6.5    1.5  2  TPT       Triose-phosphate Transporter family
  ------ inclusion threshold ------
      0.093   13.0   0.3      0.093   13.0   0.3    2.3  2  Orf78     Orf78 (ac78)
      0.096   12.8   1.1      0.096   12.8   1.1    2.4  2  BTP       Chlorhexidine efflux transporter
       0.65   10.4   5.5       0.29   11.6   1.0    2.3  2  DUF2663   Protein of unknown function (DUF2663)


Domain annotation for each model (and alignments):
>> UAA  UAA transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3  11.8   3.1e-31   9.2e-28     100     298 ..       1     214 [.       1     218 [. 0.85

  Alignments for each domain:
  == domain 1  score: 97.3 bits;  conditional E-value: 3.1e-31
         UAA 100 lipvmilGililgkrYsllqylsvllltlGviiftllsakdk......kedskeslnkfllGiallvlallldavlglvqeklyk.....kygkhsk.e 186
                 +ipv+++  l+++ +    + l+++l+++Gv +ft+  +++       +++ k+ l+++l G+all+ +l+ld++++++q+++ k     k+++++k  
  CCD25447.1   1 MIPVLLIHLLFYKTSIPNEKKLVAVLVSIGVGVFTYGGSSSRktnnidNTNGKMFLSDSLYGFALLAASLFLDGMTNATQDTMLKisrnrKHENDKKnK 99 
                 79**********************************888777899999889999999*************************98733333555556634 PP

         UAA 187 alfyshllslplfl.....llqgellsavkflsesedvallslpsklfylllnvltqyvcikgVlilisefgaltvtlvltlRKfvslllSillFknpl 280
                 ++ +shl+ ++ ++     +++  l+++ +++s+ + ++  s p  + yll +++++++++ +++++ ++ g+l++++++ +RK++s++lSi+++++ l
  CCD25447.1 100 VITGSHLMFVLNMFiilwnIIYFILFDKTQIVSALKMLY--SDPEIVSYLLTYSICGALGQCFIFYTLEQYGSLVLVMITVTRKMISMILSIIVYGKTL 196
                 566777765555556556655555666666666665555..789999**************************************************** PP

         UAA 281 tlqhlvgtllVflgllly 298
                  + +++g ++Vf g+  +
  CCD25447.1 197 NALQWTGIVIVFSGITWE 214
                 **************9865 PP

>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.3     0.026        79      44      83 ..       4      41 ..       1      80 [. 0.64
   2 !   31.5  10.2   5.7e-11   1.7e-07      45     133 ..     119     212 ..      96     213 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.026
        EamA 44 llliiallkegklaklslkdwllllllgllgtvlafllff 83
                +lli +l+ + ++  ++ k + ++l+   +g++ + +   
  CCD25447.1  4 VLLIHLLFYKTSI--PNEKKLVAVLVSIGVGVFTYGGSSS 41
                4555555555555..7777777777777777777655555 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 5.7e-11
        EamA  45 lliiallkegkl.....aklslkdwllllllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvl 133
                  + ++l+ + ++       +s  ++ ++ll+  ++++l+++++fy l+  ++ + ++it +  ++++ils++++g++l+ +q+ giv+++ G+ 
  CCD25447.1 119 IIYFILFDKTQIvsalkMLYSDPEIVSYLLTYSICGALGQCFIFYTLEQYGSLVLVMITVTRKMISMILSIIVYGKTLNALQWTGIVIVFSGIT 212
                 34445555555556655566666799******************************************************************95 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3      0.81   2.4e+03     259     289 ..       4      36 ..       2      37 .. 0.59
   2 !   16.7   6.5   1.2e-06    0.0036     146     286 ..      74     211 ..      64     213 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.81
         TPT 259 vIvlsvlvfknpvslln.aiGtavai.vGvflY 289
                 v+ + +l++k+++   + ++ + v+i vGvf Y
  CCD25447.1   4 VLLIHLLFYKTSIPNEKkLVAVLVSIgVGVFTY 36 
                 566777888888865541445555554566766 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.2e-06
         TPT 146 gfisAlisnltfslrnifsKkllkklkdldalnlfaiitilslllllPvallvegvlktpsllkstkvslkevllllllsgvlfhlynqvaymvLervs 244
                 g++ A+  ++ + +rn       k+ k ++ ++l++++ ++ +l  +   +l+++ ++ +s lk    s  e++  ll+ +++  l +   + +Le+  
  CCD25447.1  74 GMTNATQDTMLKISRNRKHENDKKN-KVITGSHLMFVLNMFIILWNIIYFILFDK-TQIVSALKML-YSDPEIVSYLLTYSICGALGQCFIFYTLEQYG 169
                 6777777788888887544433333.559***********999999999999999.4444444444.5689**************************** PP

         TPT 245 pvthsvantvKrvvvIvlsvlvfknpvsllnaiGtavaivGv 286
                  +   +  +++++++++ls++v+++ ++ l+  G +++  G+
  CCD25447.1 170 SLVLVMITVTRKMISMILSIIVYGKTLNALQWTGIVIVFSGI 211
                 ****999999999************************99997 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   3.1e-05     0.093      51      93 ..      86     129 ..      73     139 .. 0.60
   2 ?   -0.8   0.6      0.61   1.8e+03      64      85 ..     171     192 ..     164     195 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.1e-05
       Orf78  51 ekesn.aaekaqalnillisllavvcvlvllyviyYfvilrerq 93 
                  ++++ +++ ++++ i    l+ v+ ++++l+ i+Yf++  + q
  CCD25447.1  86 ISRNRkHENDKKNKVITGSHLMFVLNMFIILWNIIYFILFDKTQ 129
                 222221122333334444567778899**********9876655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.61
       Orf78  64 nillisllavvcvlvllyviyY 85 
                  +l++  ++  ++ ++l +i+Y
  CCD25447.1 171 LVLVMITVTRKMISMILSIIVY 192
                 4556666666788888988888 PP

>> BTP  Chlorhexidine efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.1   3.2e-05     0.096      39      61 ..     106     128 ..      99     130 .. 0.89
   2 ?   -1.7   1.1       1.1   3.2e+03      20      44 ..     183     207 ..     170     214 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.2e-05
         BTP  39 ldiglslfalvwnfvyNllFDrl 61 
                 l+ +l +f+++wn++y +lFD+ 
  CCD25447.1 106 LMFVLNMFIILWNIIYFILFDKT 128
                 678899***************96 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
         BTP  20 llvpllawllgvslleagvldigls 44 
                 +++ l  +++g++l    +++i+++
  CCD25447.1 183 ISMILSIIVYGKTLNALQWTGIVIV 207
                 4455555556666666666666555 PP

>> DUF2663  Protein of unknown function (DUF2663)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   1.0   9.6e-05      0.29       6      65 ..      86     151 ..      82     162 .. 0.79
   2 ?    0.5   0.4      0.26   7.7e+02      34      53 ..     173     192 ..     148     222 .. 0.46

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.6e-05
     DUF2663   6 ikrKkkweklekrllllsllallvlllfliyvlik......ssslssllsallessvlllllllva 65 
                 i r +k+e+ +k++  + +  ++vl +f+i+  i       ++++ s l++l +++ ++ +ll+  
  CCD25447.1  86 ISRNRKHENDKKNKVITGSHLMFVLNMFIILWNIIyfilfdKTQIVSALKMLYSDPEIVSYLLTYS 151
                 788999999999999999988888888877653333777789999**********99998888765 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.26
     DUF2663  34 liyvlikssslssllsalle 53 
                 l+++ +  + +s +ls+++ 
  CCD25447.1 173 LVMITVTRKMISMILSIIVY 192
                 22222223333334443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 2093.06
//
Query:       CCD25448.1  [L=611]
Description: hypothetical protein NDAI_0F01290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-62  210.8  22.3    5.5e-62  210.5  22.3    1.1  1  SRP68     RNA-binding signal recognition particle 68


Domain annotation for each model (and alignments):
>> SRP68  RNA-binding signal recognition particle 68
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.5  22.3   3.1e-66   5.5e-62       4     559 .]      23     570 ..      21     570 .. 0.85

  Alignments for each domain:
  == domain 1  score: 210.5 bits;  conditional E-value: 3.1e-66
                 S-HHHHHHHHHHHHHHHHHHTT--SS----SS-TT.-...-HHHHH.H-THHHHHHHHHHHHHHHHHHHHHHHTCTTTTTS-HHHHHHHHHHHHHHHHH CS
       SRP68   4 gDYqrYrqyltrrLrrlRkkLkfatgkrgkyakka.i...taeqva.tdvrylhllLltaERaWAyamalKaehsadkkgitgrkRshivsRLrKAakl 97 
                  D+ rY+ +l+++L++lR++ + +t+ ++ky+ k+     t ++   +++ +  l+Ll aER+ +    lK +  ++ +  +++ ++ i  RL+K +k+
  CCD25448.1  23 HDFFRYHDKLNKKLQKLRHNCGLVTKDTKKYTTKEkYskiTSDDYDnKNKLFGALVLLHAERDLSLVETLKLRGRER-GKLKKSEKKVIATRLKKVVKT 120
                 7*********************************952455777773144456679******************7776.4577899999*********** PP

                 HHHHHHHHHCS.-S--HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHH.TTTHHHHHHHTHH...HHHHHHHHHCT-SSS--HHH CS
       SRP68  98 AeeLvellseassgadertkLEarAYaallrGallfekqqWekalesyskaraiyeaLakvt.seefkdllsetveelePsiRYcaYqlkeprtapset 195
                  e+Lvel    ++++++ t+ ++ ++a+l   ++l+  +q+++ +es + a ++  a a+     + k l ++ ve l+   RY +Y l++      ++
  CCD25448.1 121 IENLVELT---ANEQNWVTRSQYLIFAKLATVEYLLYGKQFKR-KESSKIAYDLALAFASLDhLYNLKHLDESIVESLH--SRY-EYTLRQHAGNLLSQ 212
                 ********...89****************************98.89999999*999999999889999999*****777..999.67788787778888 PP

                 HHHHHH..HH-.XXXXXXXXXXXX....XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXX CS
       SRP68 196 iarkaf..ekaendllqskiekld....pealkeqaasksskapseitWrgrevkvedakirlalaavqeakaeleeeskssakekaaaYdkvLiasqD 288
                 ++ ++f  ++ +++   ++++kl      +++ ++ a ++ +++++i+Wr+ ++kv+d++++ a+ ++++      +         +a+Y   L+ ++D
  CCD25448.1 213 VDLQNFiaHQVQDTHETDELAKLLfnngFTIKFQDVAMEDVDSITHIQWRSFTTKVHDSEVAHAIEEAKNTTI---K--------DVADYSTKLLRWND 300
                 8888888855556666667776664332223333333333348*******************99987766543...3........3689********** PP

                 XXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       SRP68 289 avdatkqaid.........elekegvaqsdkrmqslqilrtavnyeklswrieRnrvlvgeadgklaeessakskkkkkegrklakleElvrLydallq 378
                 a+++++  ++           + +  ++ ++  ++ +il ++++y+ +s++i R++++++++ +++ + +s+        +++l k +E+ r++++ll+
  CCD25448.1 301 ALNKQEVRMAqfdedgyqtMIATDDEEDITNTRENDEILLSYIKYNAISTSILRDNFIFKQLCKQWIAMNSKAL------SSRLIKFKEIDRIVKNLLK 393
                 ****99999999999998777777778888899999*******************************9876553......899**************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX CS
       SRP68 379 slesikelpgvaadeelaeeleakkayfr.AlrclyiarshalaskyaeAlALlkrAlelaeealeelsksdaksk.peslevlleelqeLadelkgel 475
                 +l++++elpgv +d+el+++l+++k+yf+  l + ++a ++++++ky+e+lAL+  + +++++ l e+  ++++s  ++ +  +++++ +L++++k   
  CCD25448.1 394 YLQDLMELPGVYSDDELMNQLALTKLYFQlHLNATCLASLYQSKGKYVESLALYVDSYQKLDSKLYEIDMESEESLlLPIELLNKKNIITLQNSIKTGI 492
                 *****************************99*************************************9999865568888899999************ PP

                 XXXXXXXXX...XXXXX.............XXXXXXXXXXXXXXXXXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       SRP68 476 qrarAlvele.elkkeeeslkkslsklslsekaaakkkkkpllerLdeyp.ssggevdlknlvelPPklepvpvKPiflDvAlNyI 559
                 +++ Al+e+e +++k +     ++++++ +  ++ +k +  +le+ ++ + +  ++++lkn+++l Pkl+p+  KP+++D+A+Ny+
  CCD25448.1 493 SNVIALAEYEkTINKTT-----TNDTINNN--KN-NKYELSILEKFSKHEkIYPKNINLKNIFPLQPKLQPIGSKPTLFDLAFNYV 570
                 *********95555444.....44433333..32.35566666666643313345699999************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1408  (0.078532); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4391.50
//
Query:       CCD25449.1  [L=1561]
Description: hypothetical protein NDAI_0F01300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-26   93.6   6.6    1.1e-26   93.6   6.6    3.1  3  RasGAP_C  RasGAP C-terminus
    1.4e-16   60.9   3.1    1.4e-16   60.9   3.1    2.7  3  RasGAP    GTPase-activator protein for Ras-like GTPase
    2.4e-13   50.2   1.9    1.8e-12   47.4   0.0    3.3  3  CH        Calponin homology (CH) domain
    3.9e-08   32.4  34.2     0.0047   16.6   0.4   10.2 10  IQ        IQ calmodulin-binding motif
     0.0036   17.4   0.1        2.3    8.4   0.0    3.8  3  CH_2      CH-like domain in sperm protein
      0.008   16.9   1.3        1.4    9.7   0.1    3.2  2  Cbl_N2    CBL proto-oncogene N-terminus, EF hand-like domain
  ------ inclusion threshold ------
      0.088   13.0   2.8       0.28   11.4   0.2    3.0  2  DUF2316   Uncharacterized protein conserved in bacteria (DUF2
       0.12   12.3   3.3        1.5    8.8   1.4    3.1  2  MIT_C     Phospholipase D-like domain at C-terminus of MIT
       0.75   10.3   5.5         13    6.3   0.4    4.2  3  NPV_P10   Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> RasGAP_C  RasGAP C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0       8.7   1.7e+04      37      63 ..     240     266 ..     240     269 .. 0.73
   2 ?   -2.3   2.7       2.3   4.6e+03      60      94 ..     771     811 ..     765     860 .. 0.71
   3 !   93.6   6.6   5.4e-30   1.1e-26       1     136 [.    1321    1463 ..    1321    1464 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 8.7
    RasGAP_C  37 dirnkgrlrekrkeElesleetlktLs 63 
                 d+ n+++++   keE+++ ++t  +++
  CCD25449.1 240 DLINLSSKISFSKEEVKKCRKTWPRIR 266
                 567777777778888888888877776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.3
    RasGAP_C  60 ktLseknnylesqlesYkayienvleqlkkkkgk......l 94 
                 ++L+ + +y++s  +s     +++++ql+++ +        
  CCD25449.1 771 SKLNRRAQYYQSNANSIIMIQSHIRMQLQRSAYLefmeyaN 811
                 68999999999999999999999999998875323444441 PP

  == domain 3  score: 93.6 bits;  conditional E-value: 5.4e-30
    RasGAP_C    1 lvelkkkalenlkeLeelgvi.srennyqellneIakdirnkgrlrekrkeElesleetlktLseknnylesqlesYkayienvleqlkkkkgk... 93  
                  ++ lk++++++++eL ++g+i  ++nn+q++ln+Ia++i+n++++ +++keEl+++eet++++ + n+++e +  ++k+ i+++++ ++k + k   
  CCD25449.1 1321 YSILKENVMQKVQELFTSGIInPSDNNLQNILNDIANTIKNPDYAMNYVKEELKVTEETYQEIFNVNQKYEIDSLQLKQKIDKTIKGFSKCR-Kfdi 1416
                  5679*****************9999***************************************************************9996.3359 PP

    RasGAP_C   94 .....lpfskqyfkkrelkksgklpkfgsykysakqLeekgVLleieg 136 
                       l + k+++kk+++k s ++++  ++k+s++qL++kgV++ei g
  CCD25449.1 1417 vpsttLENLKSAYKKMQHKGSVNMQG-LKFKWSTRQLYQKGVIKEIVG 1463
                  ****98889**************999.9*****************976 PP

>> RasGAP  GTPase-activator protein for Ras-like GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   3.1   6.8e-20   1.4e-16       1     192 [.     949    1124 ..     949    1137 .. 0.89
   2 ?   -3.6   3.2       3.8   7.7e+03     102     124 ..    1337    1359 ..    1197    1408 .. 0.55
   3 ?   -3.4   2.7       3.2   6.4e+03      47      73 ..    1376    1401 ..    1313    1441 .. 0.53

  Alignments for each domain:
  == domain 1  score: 60.9 bits;  conditional E-value: 6.8e-20
      RasGAP    1 liseliklElessenpndll.rsnsvvsklleeytkrpegqeyLkkilkpllqkilekedlnlelDPrkiyeelkkkkesktgkksessgkksekea 96  
                  +++e++   ++++ ++++ l ++ ++++k l ++++r e+ e     + pllq++  +++ ++e DP+ iy++      +           +s+ + 
  CCD25449.1  949 FLKEILLDSIAQTPSFSQSLeDKTQLWQKALVHFVQR-ENTEKFSLFI-PLLQYLN-NPKIDFEADPSLIYKQVYGSLPP-----------NSSTPP 1031
                  79999999****999999999****************.8888776555.*****95.****************8887665...........6899** PP

      RasGAP   97 selekvsqmleknldkLkelvneildsIfksleqlPvgiRiickqirekvkekfpdaseeeilnligsflflrfliPaivnPklfglvdkqiseeq 192 
                  ++++kv +++++nl++L++ v+ i +  ++ ++++P ++R++c  +   +  +    +e ++l +i+++++  f+   +v  + +g+   + + e+
  CCD25449.1 1032 IDDPKVAEKFIENLRNLWHAVEMIAEIFTRRTNDIPIEVRYLCTKAFCAFADQNM--NEMDSLRAISNIIIKFFVAEFLVHREEYGFE-CYSNREM 1124
                  ************************************************9998885..55699*********99999999999999887.6655554 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3.8
      RasGAP  102 vsqmleknldkLkelvneildsI 124 
                  +s +++ + ++L+++ n i ++I
  CCD25449.1 1337 TSGIINPSDNNLQNILNDIANTI 1359
                  22222233333333333333333 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.2
      RasGAP   47 lkpllqkilekedlnlelDPrkiyeel 73  
                   ++ +q+i+ +++++ e+D  ++++++
  CCD25449.1 1376 TEETYQEIF-NVNQKYEIDSLQLKQKI 1401
                  122233443.44444444444444333 PP

>> CH  Calponin homology (CH) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0   8.8e-16   1.8e-12       5     106 ..     125     229 ..     121     232 .. 0.91
   2 ?   -3.1   0.0       4.6   9.1e+03      25      48 ..    1209    1232 ..    1199    1238 .. 0.79
   3 ?   -0.2   0.2      0.57   1.1e+03      46      94 ..    1343    1389 ..    1329    1395 .. 0.77

  Alignments for each domain:
  == domain 1  score: 47.4 bits;  conditional E-value: 8.8e-16
                 HHHHHHHHHHHTTSTTSSTTSCHHHHHTTSHHHHHHHHHHSTTTSSGGGSTTT..HHHHHHHHHHHHHHHHHHTTCHTTSS.-HHHHHTTSHH.HHHHH CS
          CH   5 kellrWinshleeagpkvkvedfeedlrDGvlLckLlnklapglvdkkklnks..efkkleNinlaldvaekklgvpkvli.eaedlvegknk.svltl 99 
                  e+ +Wi++ ++e+ p +      ++lr+Gv+L++++++++p+l+ ++  + +  +f++ +Nin +++++e ++gvp     e +dl+++k+  +v+++
  CCD25449.1 125 AEIKQWIEQLINEELPPELELAIGDSLRNGVYLAQVVQRINPELIHHVFPAGDklQFRHTQNINAFFSLVE-HVGVPNSFKfELQDLYNKKDLpQVFET 222
                 6889*******9998877545666***********************999988***************999.******9999*******99999***** PP

                 HHHHHHH CS
          CH 100 laqLfra 106
                 l+ L+++
  CCD25449.1 223 LYILISI 229
                 *999986 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.6
                  SCHHHHHTTSHHHHHHHHHHSTTT CS
          CH   25 edfeedlrDGvlLckLlnklapgl 48  
                  ++ +++++DG lL+++l + + +l
  CCD25449.1 1209 KSYANKFSDGGLLMEILSQNDEKL 1232
                  5677899*******9998876665 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.57
                  TTTSSGGGSTTTHHHHHHHHHHHHHHHHHHTTCHTTSS-HHHHHTTSHH CS
          CH   46 pglvdkkklnksefkkleNinlaldvaekklgvpkvlieaedlvegknk 94  
                  p+  +++++  +  + ++N  +a++ ++++l+v +     ++++++++k
  CCD25449.1 1343 PSDNNLQNILNDIANTIKNPDYAMNYVKEELKVTEET--YQEIFNVNQK 1389
                  555555555555778899999*******999999955..8888888877 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.19   3.8e+02       4      13 ..     479     488 ..     476     492 .. 0.81
   2 ?    4.5   0.0     0.018        36       4      21 .]     509     526 ..     506     526 .. 0.91
   3 ?    2.3   1.4     0.096   1.9e+02       7      19 ..     579     591 ..     578     593 .. 0.90
   4 ?    1.0   0.9      0.25     5e+02       5      17 ..     607     619 ..     607     622 .. 0.88
   5 ?    2.1   0.0      0.11   2.2e+02       3      20 ..     637     654 ..     635     655 .. 0.83
   6 ?    0.3   0.1      0.43   8.5e+02       7      17 ..     671     681 ..     671     683 .. 0.81
   7 ?    1.7   0.0      0.14   2.8e+02       4      19 ..     699     714 ..     698     716 .. 0.88
   8 !    8.3   0.1    0.0011       2.2       2      17 ..     727     742 ..     726     745 .. 0.94
   9 !    9.1   0.2    0.0006       1.2       7      19 ..     760     772 ..     759     774 .. 0.90
  10 !   16.6   0.4   2.3e-06    0.0047       3      20 ..     786     803 ..     784     804 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.19
                 HHHHHHHHHH CS
          IQ   4 aikIQaawRG 13 
                 ++ +Q+ +RG
  CCD25449.1 479 VTQLQSKCRG 488
                 799******9 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkryk 21 
                  i +Q  +RG   R+ry+
  CCD25449.1 509 TINLQGNIRGSNLRRRYR 526
                 6899*************8 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.096
                 HHHHHHHHHHHHH CS
          IQ   7 IQaawRGylaRkr 19 
                 +Q++ RG l Rkr
  CCD25449.1 579 LQRRSRGALLRKR 591
                 8***********8 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHH CS
          IQ   5 ikIQaawRGylaR 17 
                 ik+Q ++RG + R
  CCD25449.1 607 IKFQNRIRGLQLR 619
                 89*******9988 PP

  == domain 5  score: 2.1 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkry 20 
                 a++ +Q+ +R+ ++R  +
  CCD25449.1 637 AVLEFQCLVRANKVREGF 654
                 77789**********766 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 0.43
                 HHHHHHHHHHH CS
          IQ   7 IQaawRGylaR 17 
                 +Q+ +RG   R
  CCD25449.1 671 FQSICRGNFRR 681
                 6******8766 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHH CS
          IQ   4 aikIQaawRGylaRkr 19 
                 ++k+ ++++Gy+ Rk 
  CCD25449.1 699 ILKLSSHIKGYQKRKL 714
                 67999********995 PP

  == domain 8  score: 8.3 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaR 17 
                 ka+++ Q+++RG l+R
  CCD25449.1 727 KAVTLVQSQVRGILVR 742
                 8*************99 PP

  == domain 9  score: 9.1 bits;  conditional E-value: 0.0006
                 HHHHHHHHHHHHH CS
          IQ   7 IQaawRGylaRkr 19 
                 IQa++RG++ R +
  CCD25449.1 760 IQAHIRGFQLRSK 772
                 9**********87 PP

  == domain 10  score: 16.6 bits;  conditional E-value: 2.3e-06
                 HHHHHHHHHHHHHHHHHH CS
          IQ   3 aaikIQaawRGylaRkry 20 
                 ++i IQ+++R+ l+R +y
  CCD25449.1 786 SIIMIQSHIRMQLQRSAY 803
                 89*************999 PP

>> CH_2  CH-like domain in sperm protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0011       2.3       3      53 ..     129     182 ..     127     215 .. 0.74
   2 ?    4.0   0.0     0.027        54       8      37 ..    1202    1231 ..    1197    1234 .. 0.85
   3 ?   -1.7   0.0       1.7   3.3e+03      48      64 ..    1527    1543 ..    1511    1556 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
        CH_2   3 kWlqs.ldlsrsvk...nlkrdfsdGvlvAeilkkyypklvdlhnysngsslaak 53 
                 +W+++ ++ + + +    +   + +Gv +A+++++++p+ +  h +++g++l+ +
  CCD25449.1 129 QWIEQlINEELPPElelAIGDSLRNGVYLAQVVQRINPE-LIHHVFPAGDKLQFR 182
                 67777654444444435567889****************.667999999998865 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.027
        CH_2    8 ldlsrsvknlkrdfsdGvlvAeilkkyypk 37  
                  +++++  k+++++fsdG l+ eil++  +k
  CCD25449.1 1202 IEITQMFKSYANKFSDGGLLMEILSQNDEK 1231
                  778889999***************987655 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.7
        CH_2   48 sslaaklnNWetLekvl 64  
                  +++ +k++ We+L+k  
  CCD25449.1 1527 TQVGTKIETWELLNKRV 1543
                  56889999***996654 PP

>> Cbl_N2  CBL proto-oncogene N-terminus, EF hand-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.1   0.00069       1.4      42      78 ..    1120    1156 ..    1092    1159 .. 0.83
   2 ?    4.4   0.1     0.032        63      24      65 ..    1373    1416 ..    1360    1420 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00069
                  .HHHHHHHH-TT-SSEEEHHHHHHHHHHH--GGGHHH CS
      Cbl_N2   42 ealaLkstidltcndyisvfefdvFtrlFqPwssllk 78  
                  +++++++ +d+  ++ i+vfe dvF  ++ P+++ ++
  CCD25449.1 1120 SNREMNAKLDILLHSLIKVFEMDVFDGFYDPLNQYVQ 1156
                  46788999************************99876 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.032
                  HHHHHHHHHHHH---GGG...HHHHHHHH-TT-SSEEEHHHHHH CS
      Cbl_N2   24 wkefkealekvhkvesske..alaLkstidltcndyisvfefdv 65  
                   k+ +e+++++++v+++ e  +l+Lk+ id t + + +  +fd+
  CCD25449.1 1373 LKVTEETYQEIFNVNQKYEidSLQLKQKIDKTIKGFSKCRKFDI 1416
                  5667888999999998877557899*****************98 PP

>> DUF2316  Uncharacterized protein conserved in bacteria (DUF2316)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2      0.85   1.7e+03       4      34 ..     829     859 ..     826     869 .. 0.81
   2 ?   11.4   0.2   0.00014      0.28      14      67 ..    1354    1407 ..    1345    1426 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.85
     DUF2316   4 nkeerkaTkkeLqanfelsgltveevaedLn 34 
                 n+e++++  + Lqa f + +++ e++++ + 
  CCD25449.1 829 NIEDTQNKLESLQASFDAENIKRENLQKSIR 859
                 677788888999**********999988765 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00014
     DUF2316   14 eLqanfelsgltveevaedLnlttekvekvLelkasrledvWilrdyLeekike 67  
                  ++++  +  ++ ++ v e+L++t+e  ++++++++++  d   l++ ++++ik 
  CCD25449.1 1354 DIANTIKNPDYAMNYVKEELKVTEETYQEIFNVNQKYEIDSLQLKQKIDKTIKG 1407
                  566667777889999**********************************99986 PP

>> MIT_C  Phospholipase D-like domain at C-terminus of MIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.17   3.4e+02      55      90 ..     465     500 ..     448     503 .. 0.89
   2 ?    8.8   1.4   0.00077       1.5      10      82 ..     778     850 ..     776     864 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.17
       MIT_C  55 Tsedeeeedeqkenleelkesleklgielevefsst 90 
                 T++++ +ede  +n+++l+++++  +i+++++++++
  CCD25449.1 465 TRRQRMNEDEFLDNVTQLQSKCRGINIRFTLHIQNH 500
                 66777888999*******************998765 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00077
       MIT_C  10 kyldd.ateikiedpYirarhqirnlvrllellvkkskklkkikLlTsedeeeedeqkenleelkesleklgie 82 
                 +y ++ a++i +  ++ir + q +  ++++e +    k+++k + l ++ e + ++++++le+l++s  + +i+
  CCD25449.1 778 QYYQSnANSIIMIQSHIRMQLQRSAYLEFMEYANPCLKSVRKFTYLLNNRE-NIEDTQNKLESLQASFDAENIK 850
                 5666669**************************999888888876665555.5688999*********999997 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.4     0.079   1.6e+02       6      47 ..     823     865 ..     821     872 .. 0.66
   2 ?   -2.7   0.0       4.5   8.9e+03      49      67 ..    1043    1061 ..    1039    1067 .. 0.76
   3 ?    6.3   0.4    0.0065        13       3      58 ..    1349    1405 ..    1347    1420 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.079
     NPV_P10   6 LlvIradikavddkVdalqqqv..ddv.qenlpdvtelnekLdaq 47 
                 Ll  r++i+++++k+++lq++   +++ +enl++   + + Ld +
  CCD25449.1 823 LLNNRENIEDTQNKLESLQASFdaENIkRENLQK--SIRNDLDIL 865
                 5666889999999999999988332331344444..566666654 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 4.5
     NPV_P10   49 aqLaeletkvenIqdiLnp 67  
                  ++L +l  +ve I +i + 
  CCD25449.1 1043 ENLRNLWHAVEMIAEIFTR 1061
                  67889999*******9984 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0065
     NPV_P10    3 qniLlvIradikavddkVdalqqqvddvqenlpdvtelnekLdaqsaqLa.eletkv 58  
                  qniL  I + ik+ d  ++ ++++++  +e  +++ ++n+k +  s qL+ ++++++
  CCD25449.1 1349 QNILNDIANTIKNPDYAMNYVKEELKVTEETYQEIFNVNQKYEIDSLQLKqKIDKTI 1405
                  9****************************************9999999962466665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1024  (0.0571142); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.89u 0.26s 00:00:01.14 Elapsed: 00:00:00.42
# Mc/sec: 11146.68
//
Query:       CCD25450.1  [L=296]
Description: hypothetical protein NDAI_0F01310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-06   27.1   3.3    1.3e-05   24.9   3.3    2.2  1  TBCC      Tubulin binding cofactor C
    0.00098   19.6   1.9    0.00098   19.6   1.9    2.0  2  TBCC_N    Tubulin-specific chaperone C N-terminal domain


Domain annotation for each model (and alignments):
>> TBCC  Tubulin binding cofactor C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   3.3   1.5e-09   1.3e-05       8     107 ..     137     261 ..     131     275 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.5e-09
                 S-BS-EEEE........-S--S-EEEES-BS-EEE----...SS-EEEES-BS-EEE---S.....EEEEES-BS-EEE---..........SSEEEEE CS
        TBCC   8 nlsdctiyl........ldplssvtiddcknctivlgpv...sgsvfiedcenctivvacr.....qlrihdctnvdvyllt..........ksrPiie 80 
                 nl++c ++          +   s+ +++++n  i l  +   +gs fi++c+n++i +a+r     q+r+h+ +n+++y+++           ++ i+e
  CCD25450.1 137 NLVNCIVVSgsniipedENVNGSLSFHNIDNTLINLQSIpfnNGSFFISNCKNSVILLATRtnntiQVRLHELNNCKIYIQSaisgregenkDQNVILE 235
                 5555555555555555445556899999999999998876668***************998777779*************984444443332367888* PP

                 S-BSEEEE------TTSHHHHHHHT-- CS
        TBCC  81 dskgirfapynlsypeleehlkkagld 107
                 +++gi f + +  y e++ ++ + +l+
  CCD25450.1 236 NCSGIIFHERSKPYLEIQ-DFTNLNLN 261
                 ********9999999986.45554443 PP

>> TBCC_N  Tubulin-specific chaperone C N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   1.9   1.1e-07   0.00098      44     109 ..      11      76 ..       6      80 .. 0.92
   2 ?   -0.9   0.1      0.24   2.1e+03      41      51 ..     100     110 ..      76     189 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.1e-07
      TBCC_N  44 aieellesveesadksklkqkldeitaeiqeLqkllaessmfLpsYdlrsaqealskLkesleear 109
                 + +++le+++e +++++++ + ++i  +  eL+k+++e s  Lp+Yd++++ ++l++L + +++++
  CCD25450.1  11 SFRTRLEKLQEILEDEDKNLDYNDIYLNAIELNKIFNEISNDLPTYDMERYSSQLQSLLKVINSKN 76 
                 56789999999999999*******************************************999875 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.24
      TBCC_N  41 ekaaieelles 51 
                 + a++ee+ ++
  CCD25450.1 100 KTAKVEEKTNN 110
                 33333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1321  (0.0736795); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 2370.53
//
Query:       CCD25451.1  [L=219]
Description: hypothetical protein NDAI_0F01320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-22   77.4   1.7    8.1e-15   55.2   0.2    2.1  2  Ank_2     Ankyrin repeats (3 copies)
      3e-15   56.4   0.0    1.3e-10   41.5   0.0    1.9  2  Ank_4     Ankyrin repeats (many copies)
    2.2e-14   53.3   0.1    2.3e-07   30.9   0.1    2.7  2  Ank_5     Ankyrin repeats (many copies)
    9.3e-13   47.1   0.0    2.4e-05   24.4   0.0    2.6  2  Ank_3     Ankyrin repeat
    3.8e-12   46.1   0.0    6.8e-05   23.1   0.0    2.6  2  Ank       Ankyrin repeat


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.2   2.3e-18   8.1e-15      14      82 ..      40     121 ..      19     122 .. 0.78
   2 !   28.6   0.1   4.3e-10   1.6e-06      22      78 ..      87     149 ..      73     158 .. 0.69

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 2.3e-18
       Ank_2  14 klLlegadpnkngktaLhyAakngnleivklLle.....h........adndgrtpLhyAarsghleivklLl.ekgadinlk 82 
                 klLl  +d + ++ t+Lh Aa ng++e++k+Ll+     +        ++++g+t+Lh+Aa +g l++v+l + e++ad+ ++
  CCD25451.1  40 KLLLTIKDSE-TKSTPLHMAAGNGHVEVIKYLLSliegkEnqtkyinqVNDTGNTALHWAALNGKLDVVELICeEYDADPFIR 121
                 3444223333.669*******************8766651566676677799*********************6568998665 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 4.3e-10
       Ank_2  22 pnkngktaLhyAakngnleivklLleh.......adndgrtpLhyAarsghleivklLlekgad 78 
                 +n++g+taLh+Aa ng+l++v+l++e+        ++ g+ +++ A  +g +++  ++l+k  d
  CCD25451.1  87 VNDTGNTALHWAALNGKLDVVELICEEydadpfiRNQFGHDAIFEAENNGKEDVETYFLKK-YD 149
                 2238999999999999999999999865755554447799999999877875555577744.34 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.5e-07   0.00089      33      55 .]      49      71 ..      16      71 .. 0.72
   2 !   41.5   0.0   3.8e-14   1.3e-10       3      53 ..      53     109 ..      51     110 .. 0.91

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.5e-07
       Ank_4 33 rsGetalhiAakrgnveilklLl 55
                +   t+lh+Aa +g+ve++k+Ll
  CCD25451.1 49 ETKSTPLHMAAGNGHVEVIKYLL 71
                44569*****************8 PP

  == domain 2  score: 41.5 bits;  conditional E-value: 3.8e-14
       Ank_4   3 taLhyaaisgrlelvrlLlek..gad.....inaqdnrsGetalhiAakrgnveilkl 53 
                 t+Lh+aa  g++e++++Ll+   g++     in + n+ G+talh Aa++g++++++l
  CCD25451.1  53 TPLHMAAGNGHVEVIKYLLSLieGKEnqtkyINQV-NDTGNTALHWAALNGKLDVVEL 109
                 99*****************655566699999****.*******************986 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     2e-07   0.00072      15      36 ..      50      71 ..      42      83 .. 0.82
   2 !   30.9   0.1   6.5e-11   2.3e-07      10      49 ..      85     125 ..      82     131 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2e-07
       Ank_5 15 ggntpLhvAakygaadvvrlLl 36
                 + tpLh+Aa +g+ +v+++Ll
  CCD25451.1 50 TKSTPLHMAAGNGHVEVIKYLL 71
                345******************9 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 6.5e-11
       Ank_5  10 nrldgggntpLhvAakygaadvvrlLl.argadlnltdsrG 49 
                 n  +  gnt+Lh+Aa +g +dvv+l++ ++ ad+++++  G
  CCD25451.1  85 NQVNDTGNTALHWAALNGKLDVVELICeEYDADPFIRNQFG 125
                 6678889******************************9887 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.5e-07   0.00053       3      23 ..      52      72 ..      50      77 .. 0.92
   2 !   24.4   0.0   6.7e-09   2.4e-05       2      29 ..      91     118 ..      90     120 .. 0.95

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 1.5e-07
       Ank_3  3 etpLhlAarsgnleivkfLle 23
                 tpLh+Aa +g++e++k+Ll 
  CCD25451.1 52 STPLHMAAGNGHVEVIKYLLS 72
                59*****************97 PP

  == domain 2  score: 24.4 bits;  conditional E-value: 6.7e-09
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G+t+Lh+Aa++g+l++v++++e++ ad+
  CCD25451.1  91 GNTALHWAALNGKLDVVELICEEYDADP 118
                 9*********************999997 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.4e-07   0.00049       4      22 ..      53      71 ..      52      89 .. 0.81
   2 !   23.1   0.0   1.9e-08   6.8e-05       2      31 ..      91     122 ..      90     123 .. 0.82

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.4e-07
                BHHHHHHHHTTHHHHHHHH CS
         Ank  4 TPLHlAatngkkriiklLL 22
                TPLH+Aa ng++++ik+LL
  CCD25451.1 53 TPLHMAAGNGHVEVIKYLL 71
                9****************98 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 1.9e-08
                 SBBHHHHHHHHTTHHHHHHHH..TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL..hGAnlnald 31 
                 GnT+LH+Aa ngk+++++l+   + A++ +++
  CCD25451.1  91 GNTALHWAALNGKLDVVELICeeYDADPFIRN 122
                 9*****************55553359998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1133  (0.0631937); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1546.54
//
Query:       CCD25452.1  [L=294]
Description: hypothetical protein NDAI_0F01330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-38  129.5   0.9    2.2e-37  127.5   0.1    2.0  2  eIF-5_eIF-2B     Domain found in IF2B/IF5
  ------ inclusion threshold ------
      0.025   14.4   0.7       0.12   12.2   0.0    2.5  3  IF2_N            Translation initiation factor IF-2, N-termin
      0.029   13.9   0.2      0.058   12.9   0.2    1.5  1  TF_Zn_Ribbon     TFIIB zinc-binding
      0.072   13.7   2.9        1.3    9.6   0.7    2.7  2  BST2             Bone marrow stromal antigen 2
      0.079   13.2   1.8       0.23   11.7   1.8    1.8  1  PKI              cAMP-dependent protein kinase inhibitor
       0.11   12.4   0.1        1.5    8.8   0.0    2.3  2  DUF35_N          Rubredoxin-like zinc ribbon domain (DUF35_N)
       0.35   10.6   6.9        2.6    7.8   6.0    2.1  2  Pex19            Pex19 protein family
        3.5    8.1   5.8         29    5.1   1.9    2.7  2  Arc_trans_TRASH  Archaeal TRASH domain


Domain annotation for each model (and alignments):
>> eIF-5_eIF-2B  Domain found in IF2B/IF5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.28   6.3e+02      13      78 ..      63     134 ..      54     137 .. 0.58
   2 !  127.5   0.1   9.7e-41   2.2e-37       8     116 ..     164     273 ..     157     274 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.28
                   STT--EEEETT.EEEETTHHHHHHHH......TTSHHHHHHHHHHHHTSEEEES.ETTEEEESSSSSCCHHHH CS
  eIF-5_eIF-2B  13 mpklqvkvegkkktvivNfeeiakaL......nrdpehvlkyllkelgtqgsid.engrlilngkfeakklek 78 
                    +++ +++  + +t +  ++++   L      ++++e +++ + kel+ +g    ++g+ + +g+ e+++l+k
    CCD25452.1  63 SKDVATETSTN-NTSVDDLSDVLGDLtlkkkkKKSKEATTDDFEKELAKAGVSTsKDGTPLSEGNSESETLQK 134
                   44444444444.7777777777766522211134456677778888887776554666666677777777765 PP

  == domain 2  score: 127.5 bits;  conditional E-value: 9.7e-41
                   SS--SSTT--EEEETT.EEEETTHHHHHHHHTTSHHHHHHHHHHHHTSEEEESETTEEEESSSSSCCHHHHHHHHHHHHHTSTSSSTSTCEEECC.. CS
  eIF-5_eIF-2B   8 kerykmpklqvkvegkkktvivNfeeiakaLnrdpehvlkyllkelgtqgsidengrlilngkfeakkleklldkyieeyVlCkeCkspetelek.. 102
                     ++++p++ + ++gk kt+++N+++i+++L+r+p+h+++yl++elgt+gs+d+++rl+++gkf++k++e++l++yi eyV+Ck+Cks +t+l+k  
    CCD25452.1 164 GPKFRIPPPVCLRDGK-KTIFANIQDISEKLQRSPDHLIQYLFAELGTSGSVDGQKRLVIKGKFQSKQMENVLRRYILEYVTCKTCKSINTDLKKeq 259
                   56899***********.******************************************************************************76 PP

                   SSSCEEEEESSSTC CS
  eIF-5_eIF-2B 103 eerllvlkCkaCga 116
                   ++rl+++ Ck+Cg+
    CCD25452.1 260 SNRLFFMVCKSCGS 273
                   6************7 PP

>> IF2_N  Translation initiation factor IF-2, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.8   6.4e+03       8      16 ..       4      12 ..       3      23 .. 0.69
   2 ?   -1.7   0.2       1.2   2.7e+03       5      15 ..      76      94 ..      72     117 .. 0.51
   3 ?   12.2   0.0   5.5e-05      0.12       6      31 ..     186     211 ..     182     215 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.8
       IF2_N  8 eLAkeLgvk 16
                eLA  Lg +
  CCD25452.1  4 ELASDLGFD 12
                777777744 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.2
       IF2_N  5 rVyeLAkeLg........v 15
                +V +L + Lg        +
  CCD25452.1 76 SVDDLSDVLGdltlkkkkK 94
                5555555555444333332 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 5.5e-05
       IF2_N   6 VyeLAkeLgvkskevikkLfkelGie 31 
                 ++++ ++L+ ++  +i+ Lf+elG +
  CCD25452.1 186 IQDISEKLQRSPDHLIQYLFAELGTS 211
                 89**********************76 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   2.6e-05     0.058       2      38 ..     244     284 ..     243     287 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
                   EETTTTC.EEC..HEETSTTCE.EESSSSBEEEECCCCCCC CS
  TF_Zn_Ribbon   2 kCPnCgs.tnl..veDpergel.vCtdCGlVlednsidegp 38 
                   +C+ C+s  ++   e  +r  + vC++CG+     si+ g 
    CCD25452.1 244 TCKTCKSiNTDlkKEQSNRLFFmVCKSCGSTRSVSSIKTGF 284
                   7******5334344448888889*******99999888876 PP

>> BST2  Bone marrow stromal antigen 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.7    0.0006       1.3      24      76 ..      54     109 ..      43     115 .. 0.74
   2 ?    3.2   0.1     0.058   1.3e+02      27      60 ..     229     261 ..     222     264 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0006
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHH CS
        BST2  24 rqLtqaqeslreaeaqaatcnqtvvtLkasLek...ekaqsqkqqakvqelqgeik 76 
                 + L++ +++ ++  ++ +t n  v +L++ L     +k +++ ++a   ++++e++
  CCD25452.1  54 AGLKRKKKKSKDVATETSTNNTSVDDLSDVLGDltlKKKKKKSKEATTDDFEKELA 109
                 679999**********************9665500055555555566666666665 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.058
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        BST2  27 tqaqeslreaeaqaatcnqtvvtLkasLekekaq 60 
                 +q ++ lr+   +  tc+ t ++++ +L+ke+++
  CCD25452.1 229 KQMENVLRRYILEYVTCK-TCKSINTDLKKEQSN 261
                 567778888889999995.899999999999986 PP

>> PKI  cAMP-dependent protein kinase inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.8    0.0001      0.23      25      60 ..      66     103 ..      64     112 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0001
                 XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXX CS
         PKI  25 Iqgssatvgt..seLplkLeeLslkedekkedeessse 60 
                 ++++++t +t   +L+  L++L+lk+++kk +e+++++
  CCD25452.1  66 VATETSTNNTsvDDLSDVLGDLTLKKKKKKSKEATTDD 103
                 5555444444349*************998888888775 PP

>> DUF35_N  Rubredoxin-like zinc ribbon domain (DUF35_N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.19   4.3e+02       4      18 ..     235     249 ..     233     251 .. 0.87
   2 ?    8.8   0.0   0.00065       1.5       5      20 ..     259     274 ..     256     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.19
     DUF35_N   4 aaegrLvgqrCpdCG 18 
                 ++++ L +  C+ C 
  CCD25452.1 235 LRRYILEYVTCKTCK 249
                 79999*********5 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00065
     DUF35_N   5 aegrLvgqrCpdCGtv 20 
                 + +rL ++ C++CG+ 
  CCD25452.1 259 QSNRLFFMVCKSCGST 274
                 678***********86 PP

>> Pex19  Pex19 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.0    0.0012       2.6      46     130 ..      25     108 ..       4     111 .. 0.75
   2 ?    1.4   0.0       0.1   2.3e+02      91     121 ..     186     220 ..     175     242 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0012
       Pex19  46 aaaeaksaeasssaaeskaeeesfqdiikkTlerLkesgdkvdaaaeseeknsddllaqlLkqLeagadvegeggeegedlekml 130
                 a+++ ++ +as +++++ +++++ +d++   l+r k+ +++v ++  s+++ s d+l+++L +L+++++++++++  ++d+ek l
  CCD25452.1  25 APESFDTVDASLTKESTPTSSTNPDDALFAGLKRKKKKSKDVATET-STNNTSVDDLSDVLGDLTLKKKKKKSKEATTDDFEKEL 108
                 333344444455555557788889999999****999999999998.8****************999888888777768988866 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.1
       Pex19  91 a....eseeknsddllaqlLkqLeagadvegegge 121
                 +    e+ + ++d l++ l+++L+ +++v+g++  
  CCD25452.1 186 IqdisEKLQRSPDHLIQYLFAELGTSGSVDGQKRL 220
                 333336678999999999*****999888887653 PP

>> Arc_trans_TRASH  Archaeal TRASH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.9     0.013        29      23      36 ..     242     258 ..     235     259 .. 0.73
   2 ?    4.3   0.2     0.023        51      18      30 ..     260     272 ..     255     274 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.013
  Arc_trans_TRASH  23 yvCCktCks...elkkk 36 
                      yv CktCks   +lkk+
       CCD25452.1 242 YVTCKTCKSintDLKKE 258
                      77899998533378886 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.023
  Arc_trans_TRASH  18 knkvYyvCCktCk 30 
                       n+ +++ Ck+C 
       CCD25452.1 260 SNRLFFMVCKSCG 272
                      69**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1405  (0.0783647); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2263.63
//
Query:       CCD25453.1  [L=406]
Description: hypothetical protein NDAI_0F01340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-31  107.3   0.0    4.5e-23   81.9   0.0    2.1  2  Pkinase      Protein kinase domain
    2.6e-16   59.7   0.0    1.4e-10   40.9   0.0    2.2  2  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
       0.16   11.3   0.0       0.31   10.3   0.0    1.5  1  Kinase-like  Kinase-like


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   6.2e-09   3.7e-05      15     114 ..      71     179 ..      67     184 .. 0.88
   2 !   81.9   0.0   7.6e-27   4.5e-23     120     260 ..     250     397 ..     243     399 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 6.2e-09
                 EEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.....SSEEEEEEE--TTEBHHHHHH....HHSS--HHHHHHHH CS
     Pkinase  15 VykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.....kdelylvleyveggeladlle....rkgslseeeakkia 104
                 V + + ++++ki+++K+i     + ++ + ++rEi+  kk+k ++i+ ++++        +++ +++l + + g+l+d+++    + +s+se+e+ +i+
  CCD25453.1  71 VSEDTTNDKNKIFVIKRIHCPFGDIESVSYAMREIENYKKFKNKFIMSCLDSELVqnldgSKTCHILLPFYPMGSLQDAINrhilNGTSFSEAEIIRIT 169
                 666677899**********99988888899******************9987544458889999****************988877788********** PP

                 HHHHHHHHHH CS
     Pkinase 105 kqilegleyl 114
                   i++gl yl
  CCD25453.1 170 IGIAKGLLYL 179
                 *********8 PP

  == domain 2  score: 81.9 bits;  conditional E-value: 7.6e-27
                 E-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..........BCTTTSCGGGS-HHHH...TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHH CS
     Pkinase 120 iHrDlKpeNiLidekgelKitDFGlakelesssk..........ltsfvgtseYlAPEvl...keneyskkvDvWslGvilyelltgkppfsgekgkek 205
                  Hr +Kp+NiL++++g   i+D+   ++ + + k            + +++  +++PE+l    ++++++kvD+WslG+++y+++ g  pf+ e   + 
  CCD25453.1 250 AHRNIKPSNILFSSDGSQVISDLSSTSKSNIHLKtgkqildfkeWIDSCCSVPFMSPELLdlkMGSKIDEKVDIWSLGCTIYTIILGVSPFEREV--QL 346
                 7**********************999998888778899***9988899************99777899************************222..22 PP

                 HHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 206 vekeldqlekilkilg.etkeklpeaseiseeakdllkkllkkdpkkRltaeellq 260
                 + k ++       il  + ++    +++ s+e++d +k++l++dp+kR+t+++ll+
  CCD25453.1 347 TGKSIRM-----LILSaNFTFPEGMERHASRELIDTIKQCLQVDPTKRPTINQLLN 397
                 2222222.....23332555666667788************************997 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.7e-07    0.0034      26     122 ..      78     182 ..      66     187 .. 0.79
   2 !   40.9   0.0   2.4e-14   1.4e-10     122     259 .]     247     399 ..     245     399 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.7e-07
                  SSEEEEEEEEESTTSSHHH.HHHHHHHHHHHHTS-BTTB--EEEEEE.....SSSSEEEEEE--TTEBHHHHHHHT..CTTTSBHHHHHHHHHHHHHH CS
  Pkinase_Tyr  26 kkevkVavKtlkeeateee.keelleeakimkklkhpnivkllgvct.....keepllivteyvkgGdLlkfLrkk..ekekltlkdllsfalqvAkG 115
                  +k+   ++K ++    + e  +  ++e++  kk+k++ i+++l   +      +++  i++ + + G+L++ ++++  + ++++  +++++++ +AkG
   CCD25453.1  78 DKNKIFVIKRIHCPFGDIEsVSYAMREIENYKKFKNKFIMSCLDSELvqnldGSKTCHILLPFYPMGSLQDAINRHilNGTSFSEAEIIRITIGIAKG 175
                  44445567777665555442667899**************999876555665566799******************888999999************* PP

                  HHHHHHT CS
  Pkinase_Tyr 116 meyLesk 122
                  + yL++ 
   CCD25453.1 176 LLYLNDP 182
                  ****975 PP

  == domain 2  score: 40.9 bits;  conditional E-value: 2.4e-14
                  TTEEEST-SGGGEEEEETTEEEE-STTTHEET...TTSSEE....EETTSSTSGGGGS-HHHHHHSE...EEHHHHHHHHHHHHHHHHTTSSGTTTTS CS
  Pkinase_Tyr 122 kklvHrdlaarNvLlsenkvvkisDfGLardi...ekddey....vkkeeaklpvkWmapEslkekk...ftsksDvWsfGvllwEiftlgespypgl 209
                   ++ Hr++   N+L s++    isD   +++     k+ ++    ++  ++ ++v +m+pE l+ k    + +k D+Ws G +++ i+  g sp+++ 
   CCD25453.1 247 ISYAHRNIKPSNILFSSDGSQVISDLSSTSKSnihLKTGKQildfKEWIDSCCSVPFMSPELLDLKMgskIDEKVDIWSLGCTIYTIIL-GVSPFERE 343
                  5789*********************98776652221222223443444566789*********87766669****************98.99998764 PP

                  ...HHHHHHHHH..HTTEES-..BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH CS
  Pkinase_Tyr 210 ...kneevlekl..kegkrle..kpekcpeelyelmkkcweedpeeRptfselvekl 259
                     +  + +++l  +++   +  + +++++el + +k+c++ dp++Rpt+++l+++l
   CCD25453.1 344 vqlTG-KSIRMLilSANFTFPegMERHASRELIDTIKQCLQVDPTKRPTINQLLNDL 399
                  23133.344444133443333114568899**********************99876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   5.2e-05      0.31     167     259 ..     251     349 ..     247     385 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 5.2e-05
  Kinase-like 167 hgkftvdnllldekgglmlggftaLvragtkvvl.seve............kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwclklPlt 251
                  h ++++ n+l+  +g  ++ ++++  +   + +   +              + f  pEll  ++g       k+  k+d W lG +iy i   + P++
   CCD25453.1 251 HRNIKPSNILFSSDGSQVISDLSSTSKSNIHLKTgKQ-IldfkewidsccsVPFMSPELLDLKMG------SKIDEKVDIWSLGCTIYTIILGVSPFE 341
                  6777777777777777777777766555444443222.124445556666677888888888777......677889*************99999999 PP

  Kinase-like 252 lateeake 259
                     ++ ++
   CCD25453.1 342 REVQLTGK 349
                  88776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2937.64
//
Query:       CCD25454.1  [L=480]
Description: hypothetical protein NDAI_0F01350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.9e-155  517.4   1.4   2.4e-155  517.0   1.4    1.1  1  TIP49            TIP49 P-loop domain
    1.4e-23   82.8   0.5    4.7e-23   81.1   0.4    2.0  2  TIP49_C          TIP49 AAA-lid domain
    7.4e-08   32.9   0.5    0.00012   22.5   0.1    2.7  2  AAA              ATPase family associated with various cellul
    2.8e-07   30.4   1.3     0.0023   17.7   0.0    2.8  3  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    9.5e-06   25.1   0.2    1.8e-05   24.2   0.2    1.4  1  DnaB_C           DnaB-like helicase C terminal domain
    7.6e-05   23.2   0.3    0.00024   21.5   0.3    1.9  1  AAA_16           AAA ATPase domain
     0.0024   18.2   0.5      0.024   15.0   0.5    2.4  1  AAA_19           AAA domain
     0.0035   17.6   0.1       0.51   10.6   0.0    2.4  2  AAA_22           AAA domain
     0.0087   16.1   0.2        2.6    8.0   0.0    2.7  2  AAA_5            AAA domain (dynein-related subfamily)
     0.0087   15.5   1.0       0.17   11.2   0.3    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0088   15.6   0.6      0.022   14.3   0.2    1.8  2  AAA_25           AAA domain
  ------ inclusion threshold ------
      0.013   15.8   0.1      0.033   14.4   0.1    1.7  1  AAA_28           AAA domain
      0.062   13.0   0.1        8.2    6.1   0.0    2.6  2  Sigma54_activat  Sigma-54 interaction domain
      0.082   13.3   0.9        3.1    8.3   0.1    2.7  2  DraK_HK_N        DraK Histidine Kinase N-terminal domain


Domain annotation for each model (and alignments):
>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  517.0   1.4  1.9e-158  2.4e-155       2     351 .]      21     363 ..      20     363 .. 0.99

  Alignments for each domain:
  == domain 1  score: 517.0 bits;  conditional E-value: 1.9e-158
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   2 islhshikgLGldedgeaekeeeglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevlt 100
                 i+ hshi+gLGlde+++++ ++eg+vGq +ar+aag+i+++++++++aGravL+aGp++tGktala+++s++lg+dvpf+al+gse++sle++kte+lt
  CCD25454.1  21 IASHSHITGLGLDEHLQPRPTSEGMVGQLQARRAAGIILKMVQNGTIAGRAVLVAGPPSTGKTALAMGLSQSLGKDVPFTALAGSEIFSLELSKTEALT 119
                 799************************************************************************************************ PP

                 XXXXXXXXXXXXX-S-EEEEEEEEEEE...-SSS-..TTS--EEEEEE-SS-EEEEEE-HHHHHHHHHHT--TT-EEEEETTT--EEE-SSS-SS---- CS
       TIP49 101 qalrksigvrikeekevleGevveleveeaenplskekkikevkitlktakeekklklgskiaeellkekvkegDviviekesGkvkklGrsearakef 199
                 qalrksig++i ee+e++eGevve+++   +++++    +k+ k+t+kt+++e+ ++lg+k+++ l+kekv +gDvi i+k+sGk++klGrs+ar++++
  CCD25454.1 120 QALRKSIGIKITEETELIEGEVVEIQI---DRSIT--GGHKQGKLTIKTTDMETIYELGNKMIDGLTKEKVLAGDVISIDKASGKITKLGRSFARSRDY 213
                 *************************99...67777..78899********************************************************* PP

                 --..S--------S---S----XXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 200 Di..ekdefvelPkGevekkkevvqevtLhdlDvanarpqdllslllqllkskkteiteklreeinkkvakyveegkaeivpGvlfiDevhmlDiecfs 296
                 D+   +++fv++P+Ge++k+k+vv++v+Lh++Dv+n+r+q++l+l+    +++++ei +++r++in+kva+++eegkaeivpGvlfiDevhmlDiecfs
  CCD25454.1 214 DAmgADTRFVQCPEGELQKRKTVVHTVSLHEIDVINSRTQGFLALF----TGDTGEIGSEVRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFS 308
                 **99999***************************************....************************************************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 297 ylnraleselaPivilatnrgiakirGtdiisphGipvDlldrlliiktekytke 351
                 ++nrale+e+aPi+i+atnrgi++ rGt ++sphG+p+Dlldr +ii+t++y+++
  CCD25454.1 309 FINRALEDEFAPIIIMATNRGISQTRGTTYKSPHGLPLDLLDRSIIITTNQYNEQ 363
                 ****************************************************985 PP

>> TIP49_C  TIP49 AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.4   5.6e+03      46      63 ..     155     172 ..     153     172 .. 0.87
   2 !   81.1   0.4   3.6e-26   4.7e-23       1      66 []     368     433 ..     368     433 .. 1.00

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.4
     TIP49_C  46 krkkkevevedveeveeL 63 
                 k++k ++++ d e ++eL
  CCD25454.1 155 KQGKLTIKTTDMETIYEL 172
                 6788899*******9998 PP

  == domain 2  score: 81.1 bits;  conditional E-value: 3.6e-26
     TIP49_C   1 IlkiRakeEgvkldeeAldlLakigtetSLRYaiqLltpasilakkrkkkevevedveeveeLFlD 66 
                 Il+iRa+eE+v+++ e+ldlL+k+g+etSLRY+ +L+++++++a krk++ v++ d+++++ LFlD
  CCD25454.1 368 ILSIRAQEEEVEITPEGLDLLTKTGVETSLRYSSNLISVSQQIALKRKSNVVDIVDIKKAYLLFLD 433
                 9****************************************************************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1   9.7e-08   0.00012       1      50 [.      72     123 ..      72     142 .. 0.85
   2 !    7.9   0.0     0.003       3.8      41      70 ..     269     302 ..     230     338 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 9.7e-08
                 EEEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSSSTTHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg..vefleisgsellskyvgesekkirelf 50 
                 vl+ Gpp tGKT+la  + ++lg  v+f  + gse++s  ++++e+ +++l 
  CCD25454.1  72 VLVAGPPSTGKTALAMGLSQSLGkdVPFTALAGSEIFSLELSKTEALTQALR 123
                 799*******************7679***********777777776666554 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.003
                 HHHHHHHHHHHHHHHTS....TSEEEEEETGGGH CS
         AAA  41 esekkirelfkeakeka....kpsilfiDEidal 70 
                 e  ++i+  ++e ke+      p +lfiDE++ l
  CCD25454.1 269 EVRDQINTKVAEWKEEGkaeiVPGVLFIDEVHML 302
                 44455555555555544566689*********88 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.8e-06    0.0023       7      64 ..      43     100 ..      36     122 .. 0.90
   2 !   10.7   0.1   0.00025      0.33      87     118 ..     293     324 ..     288     334 .. 0.88
   3 ?   -2.2   0.0       2.4   3.1e+03      66      94 ..     409     436 ..     390     452 .. 0.73

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.8e-06
      RuvB_N   7 eeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkit 64 
                 e  +gq + +    i+++  ++ + a   vl++GpP  Gkt+la+ +++ lg ++  t
  CCD25454.1  43 EGMVGQLQARRAAGIILKMVQNGTIAGRAVLVAGPPSTGKTALAMGLSQSLGKDVPFT 100
                 5689***********************************************9988766 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00025
      RuvB_N  87 vlfideihrlsraveevlysamedfrldivig 118
                 vlfide+h l+ +   ++  a+ed    i+i 
  CCD25454.1 293 VLFIDEVHMLDIECFSFINRALEDEFAPIIIM 324
                 9***********************99988885 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.4
      RuvB_N  66 gPvlekagdlaalltnleekdvlfideih 94 
                   +l+++++++ ++ ++++  +lf+d   
  CCD25454.1 409 QIALKRKSNVVDIV-DIKKAYLLFLDSKR 436
                 45678888888875.78999999999644 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   1.4e-08   1.8e-05      12     121 ..      62     176 ..      58     196 .. 0.71

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.4e-08
                 HCTSBXTTXEEEEEEXTTSSHHHHHHHHHHHHHH....CSTSEEEEEESSSXHHHHHHHHHHHHHTXX...HHHHHHTTSXHHHHHHHHHHHHHHHHSE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      DnaB_C  12 ltsGlqkgdliiiAarpsmGktalalniaenaav....keklpvavfslemsaeqlvqRllsseaeid...skklrtgklkeedweklteaieelseak 103
                 + +G   g  +++A+ ps+Gktala+ + ++  +    ++ ++  +fsle s+++ +++ l +  +i+   +++l +g++ e ++++  +  +  ++ k
  CCD25454.1  62 VQNGTIAGRAVLVAGPPSTGKTALAMGLSQSLGKdvpfTALAGSEIFSLELSKTEALTQALRKSIGIKiteETELIEGEVVEIQIDRSIT--GGHKQGK 158
                 5578888999*******************9988733333344699****************99998873223445556666545544433..4456778 PP

                 EEEEEXSSXCHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
      DnaB_C 104 lfiddtpaltvseirska 121
                 l+i+ t   t+ e+ +k+
  CCD25454.1 159 LTIKTTDMETIYELGNKM 176
                 888888888888887765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.3   1.9e-07   0.00024      16     106 ..      59     151 ..      52     308 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 1.9e-07
      AAA_16  16 lervrsgrp..elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipy...salaqalareellrqlldeaesaeleawrekleeala 106
                 l++v  g+   ++vl+ G++ +GK++l+  l ++l kd  +++ +  + ++ +  +    al+qal r+++  ++ +e+e  e e    +++++++
  CCD25454.1  59 LKMVQNGTIagRAVLVAGPPSTGKTALAMGLSQSLGKDVPFTALAGSEIFSLE--LsktEALTQAL-RKSIGIKITEETELIEGEVVEIQIDRSIT 151
                 566666666779**************************544455555555333..23223477777.65777777766666666666666666666 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.5   1.8e-05     0.024       7     129 ..      66     317 ..      60     325 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.8e-05
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkp.............eeillvaftgrAakelrerlaalgae........................ 68 
                 +++ + +lv ++p tGKT + ++  + l +     +              e l  a+ +    +++e+++ +++e                        
  CCD25454.1  66 TIAGRAVLVAGPPSTGKTALAMGLSQSLGKDVPFTAlagseifslelskTEALTQALRKSIGIKITEETELIEGEvveiqidrsitgghkqgkltiktt 164
                 6788999**************999999988776555778666555554333333333333444555555555555999999999999999998888888 PP

      AAA_19  69 .atTiHrlal......................................................................................... 77 
                   +Ti +l++                                                                                         
  CCD25454.1 165 dMETIYELGNkmidgltkekvlagdvisidkasgkitklgrsfarsrdydamgadtrfvqcpegelqkrktvvhtvslheidvinsrtqgflalftgdt 263
                 8888888887********************************************************************999999999999999999999 PP

      AAA_19  78 ....ldfddlltealelleeaeeekklqeeellivDEfqdvdelqyrLlkallgek 129
                      ++ d+++++++  + +e + ++    +l++DE+ ++d   ++++++ l+++
  CCD25454.1 264 geigSEVRDQINTKVAEWK-EEGKAEI-VPGVLFIDEVHMLDIECFSFINRALEDE 317
                 9988444554444444434.4555555.577***********99999998887555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.023        30       6      30 ..      70      94 ..      68     197 .. 0.79
   2 !   10.6   0.0    0.0004      0.51      39     128 ..     217     324 ..     194     333 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.023
      AAA_22  6 gilvvtGesGtGKTtllrrlleqld 30
                + ++v G++ tGKT l+  l ++l 
  CCD25454.1 70 RAVLVAGPPSTGKTALAMGLSQSLG 94
                56899***********988887774 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0004
      AAA_22  39 rpevvfvtlpsst..sskdl.lrellralglelka.......erlsseellealeqalrarav...........ielliiDEaqhlrseealeeLrsll 116
                 ++++ fv++p+++  ++k++  +  l+++++ +++        ++++ e+ + ++++++++ +           +++l iDE++ l   e+++++ + l
  CCD25454.1 217 GADTRFVQCPEGElqKRKTVvHTVSLHEIDVINSRtqgflalFTGDTGEIGSEVRDQINTKVAewkeegkaeivPGVLFIDEVHML-DIECFSFINRAL 314
                 55566777777776666666334446666666666777777767777777777777887777778888888999************.999999995444 PP

      AAA_22 117 nlsrkgvqliLv 128
                 +  +   ++i++
  CCD25454.1 315 E--DEFAPIIIM 324
                 4..344444444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0021       2.6       2      26 ..      72      96 ..      71     112 .. 0.81
   2 ?    5.3   0.0     0.014        18      66     122 ..     291     359 ..     264     373 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0021
                EEEE--SSSSHHHHHHHGGGGBS-- CS
       AAA_5  2 vlLvGppGtgKselaerlaaalnre 26
                vl+ Gpp tgK+ la+ l++ l++ 
  CCD25454.1 72 VLVAGPPSTGKTALAMGLSQSLGKD 96
                8999****************99433 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.014
                 -SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---..................-EEEEEESS CS
       AAA_5  66 geilvlDEveraesevlnsLlslleerrllleeggelvkakndd.ller...........frviatanp 122
                 + +l++DEv++++ e ++  ++ le++  ++  + +  + +++   +++            ++i t+n+
  CCD25454.1 291 PGVLFIDEVHMLDIECFSFINRALEDEFAPIIIMATNRGISQTRgTTYKsphglpldlldRSIIITTNQ 359
                 679**********************98666655555555555444444455666666666666666665 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.3   0.00013      0.17       6      67 ..      46     114 ..      43     128 .. 0.71
   2 ?    2.1   0.0     0.083   1.1e+02     108     133 ..     292     317 ..     285     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
  Mg_chelatase   6 kGqeeakralei.......aaaGgHnlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkk 67 
                   +Gq +a+ra  i         + g  +l++Gpp +GKt la  l++ l +     al  ++i s+  +k
    CCD25454.1  46 VGQLQARRAAGIilkmvqnGTIAGRAVLVAGPPSTGKTALAMGLSQSLGKDVPFTALAGSEIFSLELSK 114
                   567777776544222222222335689******************999998888888888888887633 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.083
  Mg_chelatase 108 GvLfLDElpefkrkvlevLRePledg 133
                   GvLf+DE+  ++ + +  + + led+
    CCD25454.1 292 GVLFIDEVHMLDIECFSFINRALEDE 317
                   9********99999999999999986 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   1.7e-05     0.022      28      64 ..      65     100 ..      58     109 .. 0.83
   2 ?   -2.0   0.0       1.7   2.2e+03     135     162 ..     419     446 ..     371     452 .. 0.70

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.7e-05
      AAA_25  28 gllpagelallaGapgtGKttlaldlalavatGkpwl 64 
                 g  +ag  +l+aG+p tGKt+la+ l+ ++ ++ p++
  CCD25454.1  65 GT-IAGRAVLVAGPPSTGKTALAMGLSQSLGKDVPFT 100
                 44.589********************99887777775 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.7
      AAA_25 135 aaieevegvrlvviDplsralggdensn 162
                  +i +++++ l+ +D+  ++   +en++
  CCD25454.1 419 VDIVDIKKAYLLFLDSKRSVKFVQENES 446
                 4556667788999999999999999876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   2.6e-05     0.033       2      58 ..      72     131 ..      71     147 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.6e-05
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvvpEaareileeklakgedalpwv.edllafaer 58 
                 + + G++stGKT l+  L++    ++p  + a+ ei++ +l k+e  l ++ ++ + +++ 
  CCD25454.1  72 VLVAGPPSTGKTALAMGLSQSlgkDVPFTALAGSEIFSLELSKTEA-LTQAlRKSIGIKIT 131
                 7899***************9887789999999***99999988875.55444555555554 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.022        28      15      56 ..      62     102 ..      49     119 .. 0.74
   2 ?    6.1   0.0    0.0064       8.2      87     119 ..     285     316 ..     239     328 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.022
                      HHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEE CS
  Sigma54_activat  15 ikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvav 56 
                      +++ +     vl+ G   tGK+ la  + ++   k+ pf a+
       CCD25454.1  62 VQNGTIAGRAVLVAGPPSTGKTALAMGLSQS-LGKDVPFTAL 102
                      4444555578***************988764.4467777766 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0064
                      HHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHH CS
  Sigma54_activat  87 GlfekadgGtlfLDeigelplelQekLlrvlqe 119
                      G+ e    G+lf+De++ l++e+ + + r+l++
       CCD25454.1 285 GKAEI-VPGVLFIDEVHMLDIECFSFINRALED 316
                      55544.359************998888888876 PP

>> DraK_HK_N  DraK Histidine Kinase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1      0.13   1.7e+02      35      67 ..     144     180 ..     127     189 .. 0.68
   2 ?    8.3   0.1    0.0024       3.1      39      71 ..     447     478 ..     440     480 .] 0.85

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.13
                 HHHTTT-SS-S...EEEEE-TT.-.--B-S---.-SS CS
   DraK_HK_N  35 elLeeqvpgdr...yvvVripg.gtpieaGedpvegr 67 
                  ++++ ++g+     +++++++ +t +e+G++ ++g 
  CCD25454.1 144 IQIDRSITGGHkqgKLTIKTTDmETIYELGNKMIDGL 180
                 333444444446889*******99999***9998875 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0024
                 TT-SS-SEEEEE-TT-.--B-S---.-SSEEEE CS
   DraK_HK_N  39 eqvpgdryvvVripggtpieaGedpvegrvisa 71 
                 ++++++++v+++++g+  ++ G  pv+++++  
  CCD25454.1 447 QYIDDQGRVQISTNGPALVTTG-APVDDSAMDT 478
                 6899999********88*****.8889988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3345.88
//
Query:       CCD25455.1  [L=163]
Description: hypothetical protein NDAI_0F01360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.3e-31  107.0  30.5    1.5e-18   66.9   8.6    2.1  2  ATP-synt_C    ATP synthase subunit C


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4  13.9     2e-16   3.6e-12       2      60 .]      21      79 ..      20      79 .. 0.97
   2 !   66.9   8.6   8.4e-23   1.5e-18       1      60 []      98     157 ..      98     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 46.4 bits;  conditional E-value: 2e-16
                HHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  2 gaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60
                g++ a++ls +g++ig++k g ++ ++   +p+l++ksli++++++++a+ygL+va+++
  CCD25455.1 21 GCAAAMILSNVGAAIGTAKSGIGISGIGTFKPELIMKSLIPVVMSGILAIYGLVVAVLI 79
                7899999**************************************************97 PP

  == domain 2  score: 66.9 bits;  conditional E-value: 8.4e-23
                 HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   1 lgaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60 
                 l +gl+vG+++l sG++iG++g++g+r    +p+lf++ ++il+f+e+++lyg+i+alil
  CCD25455.1  98 LSCGLCVGFACLSSGYAIGIVGDVGVRKFMHQPRLFVGIVLILIFSEVLGLYGMIIALIL 157
                 578*******************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       747  (0.0416643); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1213.02
//
Query:       CCD25456.1  [L=223]
Description: hypothetical protein NDAI_0F01370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-36  124.7   8.0    2.9e-36  124.7   8.0    1.6  2  Mis14        Kinetochore protein Mis14 like
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.022   14.5   0.0    1.4  1  CPDase       Cyclic phosphodiesterase-like protein
      0.023   14.3   1.7      0.023   14.3   1.7    2.6  3  4HB_MCP_1    Four helix bundle sensory module for signal tran
      0.055   13.6   0.4       0.25   11.5   0.1    2.3  2  HATPase_c_4  Putative ATP-dependent DNA helicase recG C-termi
      0.073   13.2   0.4      0.073   13.2   0.4    1.9  2  LAM_C        Lysine-2,3-aminomutase
       0.32   10.3   2.8       0.46    9.8   2.8    1.3  1  DUF4407      Domain of unknown function (DUF4407)
       0.52   10.6   9.7          3    8.2   0.5    3.1  3  BLOC1_2      Biogenesis of lysosome-related organelles comple
        4.7    8.0   9.8          3    8.7   2.0    3.0  2  CHIP_TPR_N   CHIP N-terminal tetratricopeptide repeat domain


Domain annotation for each model (and alignments):
>> Mis14  Kinetochore protein Mis14 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.4   5.5e+03      27      27 ..      35      35 ..       9      59 .. 0.53
   2 !  124.7   8.0   1.3e-39   2.9e-36       2     132 ..      64     201 ..      63     202 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.4
                H CS
       Mis14 27 q 27
                 
  CCD25456.1 35 L 35
                1 PP

  == domain 2  score: 124.7 bits;  conditional E-value: 1.3e-39
                 HHHCTE.ECTTBX....STT.SHHHHHHHHHHTT.XXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCT--HHHHH--. CS
       Mis14   2 masesv.vinGld....sssksikdllsesqkeevEpfdlelnekvrslyqelEdltvevAqlRreaPrkiaeayakelkaeleeldeyleainelek. 94 
                 ma +s+ vi+ +d    ++++ ik+ll+es+k++vEpfdlelnekvr++yqe+Ed+tv+vAqlR ++Prk++e y+ e++++l++ld+   +i +l+k 
  CCD25456.1  64 MAIKSLrVIDVDDgveeEDTMGIKELLKESEKKNVEPFDLELNEKVRQAYQEWEDQTVKVAQLRENGPRKVNELYMSEASTYLNKLDS---RIDDLSKe 159
                 999**************99*********************************************************************...******** PP

                 ......------SSSHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Mis14  95 ....qekkdpeeddededekerleelvkqyeeslkslkelke 132
                     +++++ ++dded ++  +++e + +y+esl++l+++++
  CCD25456.1 160 itldDKTPQYKDDDEDYKTIRNIHEATSTYHESLQNLYDTEQ 201
                 **************************************9987 PP

>> CPDase  Cyclic phosphodiesterase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   9.9e-06     0.022      15      69 ..      12      73 ..       3     118 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9.9e-06
      CPDase 15 eyetlktlIqsLqtlfpds.......evFePHvTltselsvdskddvekvldsavaalksvr 69
                +  +lk + ++Lq++f+d        e FeP   +  e++v+ ++ v+ v+d+a+++l+ + 
  CCD25456.1 12 TVAQLKGIYEQLQEVFNDRldlvlpeEQFEPNDPMRREVQVNVQNFVNDVMDMAIKSLRVID 73
                556777788899999999999999999******************************99885 PP

>> 4HB_MCP_1  Four helix bundle sensory module for signal transduction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.37   8.3e+02      48      69 ..      13      34 ..       4      77 .. 0.66
   2 ?   14.3   1.7     1e-05     0.023      87     164 ..      82     158 ..      73     161 .. 0.92
   3 ?    0.9   0.2      0.13   2.8e+02     109     148 ..     177     201 ..     162     223 .] 0.45

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.37
   4HB_MCP_1 48 ikdlgeikanlrelradlleli 69
                +++l+ i ++l+e+  d l+l+
  CCD25456.1 13 VAQLKGIYEQLQEVFNDRLDLV 34
                4444444445555544444444 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1e-05
   4HB_MCP_1  87 leaeidkllekyektilteeEkelleefkeqlnaYrevrkkvlelakegkkdeAyqlyetegrparekliealeelvd 164
                     i +ll++ ek ++++++ el e++ ++ +++ +   kv +l ++g   +  +ly +e+ ++ +kl++ +++l++
  CCD25456.1  82 DTMGIKELLKESEKKNVEPFDLELNEKVRQAYQEWEDQTVKVAQLRENGP-RKVNELYMSEASTYLNKLDSRIDDLSK 158
                 5567999**************************************99999.669999999999************985 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.13
   4HB_MCP_1 109 elleefkeqlnaYrevrkkvlelakegkkdeAyqlyeteg 148
                 + + +++e+  +Y e                 ++ly+te 
  CCD25456.1 177 KTIRNIHEATSTYHE---------------SLQNLYDTEQ 201
                 333333333333333...............3333444444 PP

>> HATPase_c_4  Putative ATP-dependent DNA helicase recG C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.2   7.2e+03       9      16 ..       5      12 ..       4      12 .. 0.88
   2 ?   11.5   0.1   0.00011      0.25       7      79 ..      25     105 ..      24     113 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.2
  HATPase_c_4  9 fdDRleIt 16
                 ++DRl It
   CCD25456.1  5 YPDRLDIT 12
                 89***997 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00011
  HATPase_c_4   7 eifdDRleItspGglpggvtves.kllegrssaRNelLasllerlrlm.......eergsGiqrilealeeaglpepefre 79 
                  e+f+DRl ++ p + +++ ++ + +++ ++++  N ++  ++++lr++       ee   Gi++ l+++e+++ ++ +++ 
   CCD25456.1  25 EVFNDRLDLVLPEEQFEPNDPMRrEVQVNVQNFVNDVMDMAIKSLRVIdvddgveEEDTMGIKELLKESEKKNVEPFDLEL 105
                  689************9999999989999*****************9876666666899***************99988774 PP

>> LAM_C  Lysine-2,3-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.4   3.3e-05     0.073      74     121 ..      75     123 ..      38     129 .. 0.79
   2 ?   -1.3   0.1         1   2.3e+03      43      54 ..     178     189 ..     136     211 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.3e-05
       LAM_C  74 pdtekkkeevGisalled.eelsltPenlkrlerreayekekeheslkd 121
                  d +++++++Gi++ll++ e+++++P +l+ +e+ ++  +e e++++k 
  CCD25456.1  75 DDGVEEEDTMGIKELLKEsEKKNVEPFDLELNEKVRQAYQEWEDQTVKV 123
                 356778889*******9957889********999888888888888774 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1
       LAM_C  43 vlrnfeGvitsy 54 
                  +rn     ++y
  CCD25456.1 178 TIRNIHEATSTY 189
                 223333333333 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.8   0.00021      0.46     104     224 ..     101     215 ..      73     223 .] 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
     DUF4407 104 FekeIdaelaeeqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelael 202
                 F+ e+++++++ +qe +++  +  +   +   + +e   +++++ ++++++r+d+l +e +  ld    ++t++ + + + +k+ ++ ++a ++  ++l
  CCD25456.1 101 FDLELNEKVRQAYQEWEDQTVKVAQLRENGPRKVNELYMSEASTYLNKLDSRIDDLSKEIT--LD----DKTPQYKDDDEDYKTIRNIHEATSTYHESL 193
                 4445555555555555555444433333333333333333666666666666666666666..22....333446778899999999999999999999 PP

     DUF4407 203 kakldatarlaalraelaelea 224
                 ++  d ++r+++ r+++++l+ 
  CCD25456.1 194 QNLYDTEQRIPEIRSNIDKLKH 215
                 9999999999999999999986 PP

>> BLOC1_2  Biogenesis of lysosome-related organelles complex-1 subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0         1   2.3e+03      50      62 ..      13      25 ..       7      29 .. 0.46
   2 ?    6.6   1.4    0.0044       9.8      27      79 ..     104     158 ..      86     166 .. 0.86
   3 ?    8.2   0.5    0.0013         3      45      85 ..     181     221 ..     168     223 .] 0.56

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1
     BLOC1_2 50 leklnekyeelqp 62
                + +l+  ye+lq+
  CCD25456.1 13 VAQLKGIYEQLQE 25
                3444444444444 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0044
     BLOC1_2  27 klNeaasekykklkdvaaslekkleklnekyeel..qpylqqidqiekqvteLee 79 
                 +lNe++ + y++++d++ ++++  e+  +k +el  ++  + +++++ ++++L +
  CCD25456.1 104 ELNEKVRQAYQEWEDQTVKVAQLRENGPRKVNELymSEASTYLNKLDSRIDDLSK 158
                 69*****************999999888888864337888999999999999976 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.0013
     BLOC1_2  45 slekkleklnekyeelqpylqqidqiekqvteLeeavseLD 85 
                 ++++  + + e  ++l    q+i +i  ++++L+++v+ L+
  CCD25456.1 181 NIHEATSTYHESLQNLYDTEQRIPEIRSNIDKLKHLVAYLE 221
                 33444444444444455555666666666666666666665 PP

>> CHIP_TPR_N  CHIP N-terminal tetratricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.8      0.11   2.6e+02      24      73 ..      86     138 ..      37     141 .. 0.58
   2 ?    8.7   2.0    0.0013         3      21      74 ..     143     198 ..     132     202 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.11
                 HHHHHHHHHHCCCTTC...CHGTTTSXCHHHCHHHHHHHHHHHHHHHHHHHHH CS
  CHIP_TPR_N  24 LnkLideDkerkleel...eeeeekeedekleeeeeeieeeaderlaeLnelF 73 
                 +++L++e  ++++e      +e+  +  ++ e+++ ++++ +++  +++nel+
  CCD25456.1  86 IKELLKESEKKNVEPFdleLNEKVRQAYQEWEDQTVKVAQLRENGPRKVNELY 138
                 44555555555555554322222223333355555556666666666666665 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0013
                 HHHHHHH..HHHHHHCCCTTCCHGTTTSXCHHHCHHHHHHHHHHHHHHHHHHHHHH CS
  CHIP_TPR_N  21 qsyLnkL..ideDkerkleeleeeeekeedekleeeeeeieeeaderlaeLnelFa 74 
                  +yLnkL    +D+ ++++  ++  + ++d++  +++++i+e + ++ + L++l+ 
  CCD25456.1 143 STYLNKLdsRIDDLSKEITLDDKTPQYKDDDEDYKTIRNIHEATSTYHESLQNLYD 198
                 58898883324688888876577788888888999*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1281  (0.0714485); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1680.76
//
Query:       CCD25457.1  [L=299]
Description: hypothetical protein NDAI_0F01380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.4e-20   71.5  18.9    9.4e-20   71.1  16.0    2.3  2  Syntaxin       Syntaxin
    6.7e-14   51.6   2.5    6.7e-14   51.6   2.5    2.4  2  SNARE          SNARE domain
    0.00023   20.9  10.3    0.00034   20.3   1.9    2.8  2  Synaptobrevin  Synaptobrevin
     0.0014   18.5   3.3     0.0014   18.5   3.3    2.7  2  SKA1           Spindle and kinetochore-associated protein 1
  ------ inclusion threshold ------
      0.071   13.1   1.7       0.18   11.7   1.5    1.8  1  T2SSF          Type II secretion system (T2SS), protein F
      0.073   13.2   3.0       0.07   13.3   1.9    1.6  1  CwsA           Cell wall synthesis protein CwsA
       0.17   12.1  10.6       0.89    9.7   0.7    2.7  2  COG5           Golgi transport complex subunit 5
        1.5    8.7   8.9       0.94    9.4   1.3    2.6  2  ACCA           Acetyl co-enzyme A carboxylase carboxyltransfe
        2.1    8.6  14.4        1.1    9.5   0.3    3.3  3  DUF2951        Protein of unknown function (DUF2951)
          4    8.1  12.8       0.36   11.5   5.0    2.9  3  SlyX           SlyX
        4.4    7.1  17.2        2.9    7.7   0.4    2.7  3  PCRF           PCRF domain
          9    6.0  19.4       0.65    9.7  11.4    2.3  2  DUF745         Protein of unknown function (DUF745)


Domain annotation for each model (and alignments):
>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1  16.0   6.3e-23   9.4e-20       4     199 ..      45     233 ..      42     235 .. 0.84
   2 ?   -1.3   0.1      0.97   1.5e+03      15      36 ..     237     258 ..     231     275 .. 0.39

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 6.3e-23
    Syntaxin   4 ffkeveeikkeiekleeevkklkkqneesktstraksvk.lkkrmesdikeikkraesvkarLeaLdksnkenekksgegsavdRirksqtaaLrkklk 101
                 f++++++i++++++ e++++++++ +++++  ++ +++  +++++++++++ +    ++k ++++ ++               d  +++q+++ r+k+ 
  CCD25457.1  45 FMNTINHINQKLNTYESLINQIDRYHNNLLIEVNGDNSInMRNELDNLVSQASDLQYQLKDEIKNSQR-----------LGLNDINKQTQAENSRQKFL 132
                 88999999999999999999999999999999998888556666666655554444444444433222...........233444567999999***** PP

    Syntaxin 102 evmteynelrekireeykerieRrlevtGkevseeeieeliet.gesevflqkllqeq.rga.realseieeRhkevlelekslkeLhqlFldmavLVE 197
                 +++++y+ + ++ ++e k++  R+++++  +++ ee+e+ i++ g  ++f+q ll+ + rg+ ++al+e+++Rh+e+l+leks+ eL+qlF dm  LV 
  CCD25457.1 133 KLIQDYRIIDSNYKDENKQQAMRQYKIVQPDATAEEVENAINDvGGQQIFSQALLNANrRGEaKTALDEVQTRHQELLKLEKSMAELNQLFNDMEQLVL 231
                 ***************************************998747789999999999999999**********************************97 PP

    Syntaxin 198 eQ 199
                 eQ
  CCD25457.1 232 EQ 233
                 77 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.97
    Syntaxin  15 iekleeevkklkkqneesktst 36 
                 ie+++++v+  +++ e+ +  t
  CCD25457.1 237 IETIDQNVEAAQEDVEQGIGHT 258
                 3444444444443333332222 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       4.4   6.5e+03      15      31 ..     200     216 ..     196     217 .. 0.71
   2 !   51.6   2.5   4.5e-17   6.7e-14       1      53 []     235     287 ..     235     291 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.4
                 HHHHHHHHHHHHHHHHH CS
       SNARE  15 snveraqkeLkkavkyq 31 
                 + v+  ++eL k +k++
  CCD25457.1 200 DEVQTRHQELLKLEKSM 216
                 55666679999998876 PP

  == domain 2  score: 51.6 bits;  conditional E-value: 4.5e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                 e++ +Id+nVe aq++ve++ +++ kavk+++ +Rk k+ + +i+ +i+ vv+
  CCD25457.1 235 EVIETIDQNVEAAQEDVEQGIGHTTKAVKSARTARKNKIRCYIICALIVAVVV 287
                 79***********************************************9997 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.5     0.017        25      19      47 ..      75     103 ..      52     124 .. 0.80
   2 !   20.3   1.9   2.3e-07   0.00034       3      87 ..     207     294 ..     205     296 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.017
                    HCCHHHHCHCCCCCHHHHCCCCHHHHHHH CS
  Synaptobrevin  19 mkeNidkvlergekldeLvdktenLqssa 47 
                    ++ N d+ ++ +++ld+Lv+++++Lq + 
     CCD25457.1  75 IEVNGDNSINMRNELDNLVSQASDLQYQL 103
                    5779999******************9775 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 2.3e-07
                    XHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHH...HHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   3 dklakikaevdevkdimkeNidkvlergekldeLvdktenLqs...saqqFkkqarklkrkmwwknmkliiililvvlililiiiivi 87 
                    ++l k+++ + e  ++ ++  + vle +e ++++++  e+ q+   +     ++a k +r+   ++++++ii +l+v+++++++++++
     CCD25457.1 207 QELLKLEKSMAELNQLFNDMEQLVLEQQEVIETIDQNVEAAQEdveQGIGHTTKAVKSARTARKNKIRCYIICALIVAVVVVVVVVPS 294
                    67788999999999999999999********999999888886222566799999999999999999999*******99999999876 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   7.3      0.51   7.6e+02      14      90 ..      31     102 ..      21     181 .. 0.56
   2 !   18.5   3.3   9.3e-07    0.0014      17      79 ..     201     264 ..     187     275 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.51
                 ..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXX CS
        SKA1  14 inqdpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqeklqhlkenlpshlpkktaassa 90 
                  n++++++++d   + +++++++++ln  +  +++     ++l  e++          +++++l + + +  + + +
  CCD25457.1  31 SNTQDHSSSSDFITFMNTINHINQKLNTYESLINQIDRYHNNLLIEVNGDN-----SINMRNELDNLVSQASDLQYQ 102
                 567777778888888888888888888888888888888887774444332.....223333333222222222222 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 9.3e-07
                 .......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXX CS
        SKA1  17 dpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqek.lqhlkenlps 79 
                 + ++ ++ l k+e+++ +l++l n++++ + e++e+i+++ +++ea ++  e+ + h+ + + s
  CCD25457.1 201 EVQTRHQELLKLEKSMAELNQLFNDMEQLVLEQQEVIETIDQNVEAAQEDVEQgIGHTTKAVKS 264
                 45677999****************************************9999888888877765 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.5   0.00012      0.18      22     123 ..     186     291 ..     174     294 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
                 HHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHH.......HHHHHHHHTTXXXXXXXX CS
       T2SSF  22 laeeaengplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelr.......rkllaallepllllvval 113
                 l +  + g+ + +l+++ +r ++   l++++++ +   f ++ + ++++ e   ++++  e+++e++e+   ++       r  +++++  + +++ al
  CCD25457.1 186 LLNANRRGEAKTALDEVQTRHQELLKLEKSMAELNQ-LFNDMEQLVLEQQEVIETIDQNVEAAQEDVEQGIGHTtkavksaRTARKNKI--RCYIICAL 281
                 5555668999**********************9986.88******************************99999877654444444444..33333333 PP

                 XXXXXXXXXX CS
       T2SSF 114 lvllillail 123
                 +v++++++++
  CCD25457.1 282 IVAVVVVVVV 291
                 3333344344 PP

>> CwsA  Cell wall synthesis protein CwsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.9   4.7e-05      0.07      46     111 ..     226     296 ..     191     299 .] 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.7e-05
        CwsA  46 esrlarelaaaqeaiaqelaaaqevva....glPqaledarkkrrrk.rplllagvavavlaGGavafsiv 111
                  ++l  e  +  e+i q++ aaqe v        +a++ ar+ r++k r +++ ++ vav++   v  s+v
  CCD25457.1 226 MEQLVLEQQEVIETIDQNVEAAQEDVEqgigHTTKAVKSARTARKNKiRCYIICALIVAVVVVVVVVPSVV 296
                 456777778999***********977521114567888888888877467999997777776666655554 PP

>> COG5  Golgi transport complex subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   2.7    0.0053       7.9      12      74 ..      68     128 ..      64     138 .. 0.89
   2 ?    9.7   0.7    0.0006      0.89      51     121 ..     200     270 ..     194     280 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0053
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        COG5  12 sfanallkatnnnddteldlstplkrlnydiqeldkrlrqlitsnhleLlehlskskslssvl 74 
                 ++ n+ll   + n d+++ +  +l  l +  ++l+ +l+++i++++   l+ ++k+++++++ 
  CCD25457.1  68 RYHNNLLI--EVNGDNSINMRNELDNLVSQASDLQYQLKDEIKNSQRLGLNDINKQTQAENSR 128
                 79999999..77888999*************************************99998754 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0006
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        COG5  51 qlitsnhleLlehlskskslssvlselksslesLsasyerlkskvlepyeeaeklqsalkrlhqtldLlrr 121
                 ++++++h+eLl+  ++ ++l+++ +++++ + + ++ +e + ++v    e++e+      +  ++++++r+
  CCD25457.1 200 DEVQTRHQELLKLEKSMAELNQLFNDMEQLVLEQQEVIETIDQNVEAAQEDVEQGIGHTTKAVKSARTARK 270
                 57889999999999999999999999999999999999999999999999999988888888888777776 PP

>> ACCA  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.5     0.034        50       8      59 ..      63     115 ..      42     138 .. 0.76
   2 ?    9.4   1.3   0.00063      0.94       6      72 ..     207     277 ..     202     282 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.034
        ACCA   8 iaeleekiee.lkklaeesevdlseeieklekkleklkkeiyknltpwqkvql 59 
                 i+++++  ++ l +++ ++++++++e+++l +++++l+ ++++++++ q++ l
  CCD25457.1  63 INQIDRYHNNlLIEVNGDNSINMRNELDNLVSQASDLQYQLKDEIKNSQRLGL 115
                 44444444443445566699999999999999999999999999999998765 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00063
        ACCA   6 kpiaeleekieelkklaee...sevdlseeieklekkleklkkeiyknl.tpwqkvqlaRhpeRpktldyi 72 
                 +++ +le+ ++el++l ++     ++ +e ie++++++e++++++ + + +  + v+ aR +++ k++ yi
  CCD25457.1 207 QELLKLEKSMAELNQLFNDmeqLVLEQQEVIETIDQNVEAAQEDVEQGIgHTTKAVKSARTARKNKIRCYI 277
                 56677777777777775442112344667788888888888888888863556678888888877777776 PP

>> DUF2951  Protein of unknown function (DUF2951)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.3    0.0075        11      22      62 ..      44      84 ..      38      94 .. 0.82
   2 ?   -0.5   2.9      0.97   1.4e+03      35      72 ..     119     157 ..      97     161 .. 0.68
   3 ?    9.5   0.3   0.00072       1.1      13      90 ..     209     284 ..     198     294 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0075
     DUF2951 22 tmlekldeikdslktqekvyikldktleelrkekeideknk 62
                t+++++++i++ l+t e + +++d+  ++l  e + d+  +
  CCD25457.1 44 TFMNTINHINQKLNTYESLINQIDRYHNNLLIEVNGDNSIN 84
                7899*********************9999887777666544 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.97
     DUF2951  35 ktqekvyikldktleelrkekeideknkkkndk.nirdi 72 
                 + q + ++  +k l+ ++  + id + k++n++  +r+ 
  CCD25457.1 119 NKQTQAENSRQKFLKLIQDYRIIDSNYKDENKQqAMRQY 157
                 345666667778888899999999999998865145555 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00072
     DUF2951  13 lrrleendktmlekldeikdslktqekvyikldktleelrkekeideknkkkndknirdi...kmwvlglvgtilsslvia 90 
                 l +le+    + + ++++++    q++v + +d+++e+ + + e+      k  k  r     k+        i+++l++a
  CCD25457.1 209 LLKLEKSMAELNQLFNDMEQLVLEQQEVIETIDQNVEAAQEDVEQGIGHTTKAVKSARTArknKIRCY-----IICALIVA 284
                 456666666667789999999999999***************99877666666665554310033322.....23333333 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.5   3.7e+03      18      43 ..      48      73 ..      46      88 .. 0.74
   2 ?    0.2   0.2      0.82   1.2e+03      37      55 ..      86     104 ..      79     126 .. 0.66
   3 ?   11.5   5.0   0.00024      0.36       3      49 ..     207     253 ..     205     267 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.5
                HHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX 18 tieeLndvvaeqqqqidrlqrqlrll 43
                ti+  n+ +   +  i ++ r  + l
  CCD25457.1 48 TINHINQKLNTYESLINQIDRYHNNL 73
                78888888888888887777766555 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.82
                 HHHHHHHHHT-XXXXXXXX CS
        SlyX  37 qrqlrllaerlkeleessg 55 
                 + +l+ l+ + ++l+ + +
  CCD25457.1  86 RNELDNLVSQASDLQYQLK 104
                 4555555555555555443 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
        SlyX   3 erleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlke 49 
                 + l +LE  +a + ++ +++ + v eqq+ i+ + + +++ +e +++
  CCD25457.1 207 QELLKLEKSMAELNQLFNDMEQLVLEQQEVIETIDQNVEAAQEDVEQ 253
                 66889**********************************99998864 PP

>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.4    0.0019       2.9      16      90 ..      34     107 ..      21     117 .. 0.63
   2 ?   -0.3   0.3      0.56   8.3e+02      31      58 ..     128     155 ..     110     189 .. 0.44
   3 ?    6.0   6.4    0.0067        10      24      90 ..     189     255 ..     166     267 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0019
                 GGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT......-S-..-GGGTHHHHHHHHHH..HHHHHT CS
        PCRF  16 evwedqekakklskelaeleeivealeeleealedleeakelle..edeelaelaeeeleelekeleeleeelkklL 90 
                 + +++++++ +++++++++++ ++++e+l ++ +  ++ + l+e   d++++  +++el++l ++ ++l+ +lk+ +
  CCD25457.1  34 QDHSSSSDFITFMNTINHINQKLNTYESLINQIDRYHN-NLLIEvnGDNSIN--MRNELDNLVSQASDLQYQLKDEI 107
                 23344555666666666666666666666666666666.3333444565555..47888888888888888887655 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.56
                 HHHTHHHHHHHHHHHHHTTTHHH...HT CS
        PCRF  31 laeleeivealeeleealedleeakell 58 
                  ++  +++++++ ++++ +d ++ +++ 
  CCD25457.1 128 RQKFLKLIQDYRIIDSNYKDENKQQAMR 155
                 3333333333333333333333322222 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0067
                 SSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-..-GGG.THHHHHHHHHH..HHHHHT CS
        PCRF  24 akklskelaeleeivealeeleealedleeakelleedeelaelaeee.leelekeleeleeelkklL 90 
                 a++  +  ++l+e+ ++ +el +++++++e+++l+ +d e   l+++e +e++++++e+++e++++ +
  CCD25457.1 189 ANRRGEAKTALDEVQTRHQELLKLEKSMAELNQLF-NDMEQLVLEQQEvIETIDQNVEAAQEDVEQGI 255
                 44455666778888888889999999999988898.55554444555568899999999888887655 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   1.1      0.25   3.7e+02      79     155 ..      29     107 ..      16     130 .. 0.55
   2 ?    9.7  11.4   0.00043      0.65      90     182 ..     180     271 ..     148     272 .. 0.69

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.25
      DUF745  79 qeekkslqsseanakaaakaakqaqqqlealkallkaakenlena..eqvaagaqqelaektqlleaAkkRveeLkkql 155
                  + +++ +ss++   + +++ ++++q+l++ ++l++++    +n+  e   +++ +  +e  +l+ +A     +Lk ++
  CCD25457.1  29 TSSNTQDHSSSSDFITFMNTINHINQKLNTYESLINQIDRYHNNLliEVNGDNSINMRNELDNLVSQASDLQYQLKDEI 107
                 4444455555555666666666666666666666666655555431022223333333444555555555555555554 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00043
      DUF745  90 anakaaakaakqaqqqlealkallkaakenlenaeqvaagaqqelaektqlleaAkkRveeLkkqlkearkdlektkkaAykAacAAqeAkqk 182
                 +  + a   a+   +  +al   +++ +++l ++e+  a+ +q +++ +ql+ + ++ +e++ +++++a++d e+    + kA ++A+ A+++
  CCD25457.1 180 QIFSQALLNANRRGEAKTALD-EVQTRHQELLKLEKSMAELNQLFNDMEQLVLEQQEVIETIDQNVEAAQEDVEQGIGHTTKAVKSARTARKN 271
                 333333333333344444444.4556666777889999999*************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2920  (0.162865); expected 358.6 (0.02)
Passed bias filter:                      694  (0.0387082); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.76u 0.31s 00:00:01.07 Elapsed: 00:00:00.48
# Mc/sec: 1892.28
//
Query:       CCD25458.1  [L=1896]
Description: hypothetical protein NDAI_0F01390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-73  246.2   0.1    7.8e-73  244.2   0.0    2.1  2  Fas_alpha_ACP    Fatty acid synthase subunit alpha Acyl carri
    6.8e-69  231.6   0.5    1.7e-68  230.2   0.2    1.9  2  FAS_I_H          Fatty acid synthase type I helical domain
      2e-18   66.9   0.2    4.6e-18   65.7   0.0    1.7  2  ketoacyl-synt    Beta-ketoacyl synthase, N-terminal domain
    2.6e-16   59.8   0.0    6.4e-16   58.5   0.0    1.7  1  ACPS             4'-phosphopantetheinyl transferase superfami
      1e-12   48.1   0.0    2.9e-12   46.7   0.0    1.8  1  Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain


Domain annotation for each model (and alignments):
>> Fas_alpha_ACP  Fatty acid synthase subunit alpha Acyl carrier domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.2   0.0   2.2e-76   7.8e-73       1     162 []     142     303 ..     142     303 .. 0.99
   2 ?   -1.9   0.0         1   3.8e+03      55     112 ..    1565    1624 ..    1549    1637 .. 0.69

  Alignments for each domain:
  == domain 1  score: 244.2 bits;  conditional E-value: 2.2e-76
  Fas_alpha_ACP   1 eDepvkavdivraivaqklkkkldevplsksikdlvgGkStlqNEilgdLqaEfgslpekaedlpleelaealqesfsGklGkqssslisrlvssk 96 
                    +Depvka+ i++++va+klkk+ld++p+sk+ikdlvgGkSt+qNEilgdL++Efgs+pek+e++pl+elae++q++fsG lGkqs+slisrl+ssk
     CCD25458.1 142 PDEPVKATLILHTLVAHKLKKPLDAIPMSKTIKDLVGGKSTVQNEILGDLGKEFGSTPEKPEETPLDELAETFQDTFSGVLGKQSTSLISRLISSK 237
                    7*********************************************************************************************** PP

  Fas_alpha_ACP  97 mpggfnlaairkyLekrwglgpgrqdsvlllavtsePakRlgseaeAkafldsvvqkyakkagisL 162
                    mpggf+++++rkyL++rwgl++grqds+ll+a+ +ePa+Rl++eaeAk+fld+ +qkya+ ag++L
     CCD25458.1 238 MPGGFTITVARKYLQTRWGLASGRQDSTLLVALSNEPASRLANEAEAKSFLDTNAQKYAAIAGVDL 303
                    ***************************************************************987 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1
  Fas_alpha_ACP   55 gslpekaedlpleelaealqesf.sGklGkq.ssslisrlvsskmpggfnlaairkyLek 112 
                      +   ++e  p+  + +++ +++ +G+ G   +++ ++ l ss +pg+ n+ +i k Le+
     CCD25458.1 1565 MKHLGRSEGNPVIGVFQKFLTGHpKGAAGAWmMNGALQILNSSVIPGNRNADNIDKVLEQ 1624
                     445556666666666666655554678877515677888888888998888888888865 PP

>> FAS_I_H  Fatty acid synthase type I helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0         2   7.1e+03     128     153 ..      63      88 ..      54      97 .. 0.78
   2 !  230.2   0.2   4.9e-72   1.7e-68       1     202 [.     335     536 ..     335     537 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
     FAS_I_H 128 kassgekyaaakelgekllknarsal 153
                  +++ e+y+aa  l +++l+++++a 
  CCD25458.1  63 LKNKYESYDAALSLQRQVLCYSKDAK 88 
                 346789999999*******9998876 PP

  == domain 2  score: 230.2 bits;  conditional E-value: 4.9e-72
     FAS_I_H   1 tkkqnelvrqqlevlaryLgvdseasereaaessaevaelqaeLdlweaEhgdeylkgikpiFdakKaRrydSaWNwarqdilklyydllqgrlkdvdr 99 
                 tk+++ l+rqql+vlaryL++d +++er+ +++++ v++lq++Ld +++E g+ +++g++ +F++kKaR++dS+WNwa+q++l+ly++++ g lk+vdr
  CCD25458.1 335 TKDHKVLARQQLQVLARYLKMDLDNGERKFLKEKDTVKSLQDQLDFLTEELGEFFVNGLSTSFSRKKARVFDSSWNWAKQSLLHLYFEIIHGVLKNVDR 433
                 5899*********************************************************************************************** PP

     FAS_I_H 100 eiksrlqrilnRadenlvdlvqyllkkakassgekyaaakelgekllknarsalsaapvyvelseptaPrttidekGnieYeEvpragvqeledyveel 198
                 e+ s + +i+nR++e+l+++++y+++++++++ge+y+ ak+lge+l++n+++ l+ +pvy+++s+pt+P+t id++Gni+Y+E pr++v++l++y++e+
  CCD25458.1 434 EVVSEAINIMNRSNETLIKFMEYHVSNTDETKGENYKMAKTLGEQLIENCKEVLDMDPVYKDISKPTGPKTVIDKNGNIKYTEEPREKVRKLSQYIQEM 532
                 *************************************************************************************************** PP

     FAS_I_H 199 ksGs 202
                 + G+
  CCD25458.1 533 ALGG 536
                 *997 PP

>> ketoacyl-synt  Beta-ketoacyl synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.0   1.3e-21   4.6e-18      53     250 ..    1189    1394 ..    1166    1397 .. 0.80
   2 ?   -4.1   0.0       2.7   9.7e+03     102     138 ..    1532    1570 ..    1529    1585 .. 0.65

  Alignments for each domain:
  == domain 1  score: 65.7 bits;  conditional E-value: 1.3e-21
                     EEE-BSS.EEE..STTEGGTTSTHHHHHHHCTS-HHHHHHHHHHHHHHHHHTS.-HHTC....TTGGEEEEEEESSTHHHHHHHHHHHTT.GGG CS
  ketoacyl-synt   53 aagkiktklggfldvddfdpeffgispreaeamdpqqrllleaawealedagl.tpeel....dgsrvgvfiGvgagdyaalaaldedgs.evk 140 
                     +ag+i++          ++++++gis++   ++dp + ++l+ + ea+  +g+ +p e+    + s+vg++ G+g+g  +al+ + +d   ++ 
     CCD25458.1 1189 VAGQIPS---------GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGInDPYEMyqyvHVSEVGNCSGSGMGGVSALRGMFKDRYkDEP 1273
                     5555555.........78999********************************54544477755566**********77665555544422222 PP

                     SCTTHHHHHSTTHHHHHHHHH.HT--SSEEEEESGGGHHHHHHHHHHHHHHTTS-SEEEEEEEE---SHHHHHHHHHTTBB-TT.SG....... CS
  ketoacyl-synt  141 aspkavgavlanviagrisya.lglrGpsvtvdtACsSslvavhaavqslrsgeadvalaGGvellltpeavagfsaagllspd.gr....... 225 
                     +  ++++    n++++ +++      Gp  t++ AC+++   v+   + + sg+a+++++GG + ++++e+ + f +++++s++ +        
     CCD25458.1 1274 VQNDILQESFINTMSAWVNMLlISSSGPIKTPVGACATAVESVDIGAETILSGKAKICIVGGYD-DFQEEGSYEFGNMKATSNTlDEfeqgrsp 1366
                     2234555589**********97899***************************************.999***********999998433445566 PP

                     GGTTBTTB...-SB-BB-EEEEEEEEEC CS
  ketoacyl-synt  226 ckafdpka...dGfvlGEGvGavvLkrl 250 
                      + ++p+    +Gf+ ++G+G+ +++ +
     CCD25458.1 1367 GEMSRPATttrNGFMEAQGAGIQIIMNA 1394
                     34444444666**********9888765 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.7
                     HHTS-HHTCTTGGEEEEEEESST..HHHHHHHHHHHTT...G CS
  ketoacyl-synt  102 dagltpeeldgsrvgvfiGvgag..dyaalaaldedgs...e 138 
                      +glt    d+  v+ f G++ +  d+++ ++l+e  +   +
     CCD25458.1 1532 TYGLTV---DDLGVASFHGTSTKanDKNESSTLNEMMKhlgR 1570
                     555555...455699999999996666777777776654444 PP

>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.0   1.8e-19   6.4e-16       2     113 ..    1778    1892 ..    1777    1893 .. 0.88

  Alignments for each domain:
  == domain 1  score: 58.5 bits;  conditional E-value: 1.8e-19
                  EEEEEEEHHHHH.HHH-----HHHHHS-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTS-S.SSS--GGG-EEEE-TTS-EEEE-S-SSEEEE CS
        ACPS    2 vGiDieklsrlrkrvkrrgakilkrifteeErkllkssdeearaelfarlWaaKEAllKalgpgl.rklldfksievledstgrptlellseakkka 97  
                  vG+D+e    ++ +++ +++ +++r ft +E+k+ ks+++ +    fa++W+aKEA++K+lg +  +   ++k+ie+++ + ++p + l++eak  a
  CCD25458.1 1778 VGVDVE---LIT-SINVENDTFIERNFTTKEIKYAKSQPSIQS--SFAGIWSAKEAVFKSLGVKSqGAGASLKDIEISRVNGNAPVVVLHGEAKVAA 1868
                  9*****...777.77889************************9..****************9999444**************************999 PP

                  EEEE-............SSEEEEE CS
        ACPS   98 wkleslkid........kdyviav 113 
                   k+++++++        +++++a+
  CCD25458.1 1869 DKVGVSNVKvsishddfQSVAVAI 1892
                  999888777777776666666665 PP

>> Ketoacyl-synt_C  Beta-ketoacyl synthase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0     8e-16   2.9e-12      30     117 ..    1526    1615 ..    1499    1616 .. 0.90

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 8e-16
                       HHHHHHHHT--GGGEEEEE-SS-SSHHHHHHHHHHHHHHHGGGGG..SCTSEEE-THHHH-B-GGGHHHHHHHHHHHHHHHTEE--BTT- CS
  Ketoacyl-synt_C   30 iekalaeagvdpedvdyveahgtgtplgDpiElealkkvfgekar..kqplavgSvKsniGHleaAaGvaelikvvlalkhgvipptlnl 117 
                       ++ ala+ g++ +d ++ + hgt+t+++D++E + l++++++ +r   +p+    +K ++GH ++AaG+  +  ++++l+  vip + n 
       CCD25458.1 1526 LRGALATYGLTVDDLGVASFHGTSTKANDKNESSTLNEMMKHLGRseGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSSVIPGNRNA 1615
                       789*****************************************996556655568******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1896 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       787  (0.0438954); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.00u 0.31s 00:00:01.31 Elapsed: 00:00:00.47
# Mc/sec: 12062.38
//
Query:       CCD25459.1  [L=394]
Description: hypothetical protein NDAI_0F01400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-08   34.8   9.2    0.00032   21.0   3.0    2.7  2  zf-C2H2      Zinc finger, C2H2 type
    1.9e-08   34.3   3.9    1.9e-08   34.3   3.9    3.1  3  zf-H2C2_2    Zinc-finger double domain
    0.00031   21.3   7.7      0.046   14.6   0.3    2.7  2  zf-C2H2_4    C2H2-type zinc finger
  ------ inclusion threshold ------
      0.088   13.2   0.4      0.088   13.2   0.4    2.1  2  zf-met       Zinc-finger of C2H2 type
       0.15   12.1   3.8       0.45   10.6   3.8    1.8  1  zf-C2H2_6    C2H2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   3.0   8.9e-08   0.00032       1      23 []      19      44 ..      19      44 .. 0.94
   2 !   17.0   0.4   1.7e-06     0.006       1      19 [.      50      68 ..      50      70 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 8.9e-08
                EEET...TTTEEESSHHHHHHHHHCC CS
     zf-C2H2  1 ykCp...dCgksFkrksnLkrHirtH 23
                + C+   +C++ F+r ++L+rHir+H
  CCD25459.1 19 FCCTgygECSMAFTRAEHLTRHIRKH 44
                6788999******************9 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.7e-06
                EEETTTTEEESSHHHHHHH CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrH 19
                y C++C+k F+r +nLk+H
  CCD25459.1 50 YHCGICSKNFSRIDNLKQH 68
                89***************** PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.5     0.041   1.5e+02      11      26 .]      15      33 ..      12      33 .. 0.89
   2 !   34.3   3.9   5.4e-12   1.9e-08       1      25 [.      36      60 ..      36      61 .. 0.95
   3 ?   -0.6   0.2      0.59   2.1e+03       1      11 [.      64      75 ..      64      79 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.041
   zf-H2C2_2 11 gekpyeCp...lCdkaFkt 26
                ++k+++C    +C+ aF++
  CCD25459.1 15 QKKKFCCTgygECSMAFTR 33
                6899***********9985 PP

  == domain 2  score: 34.3 bits;  conditional E-value: 5.4e-12
   zf-H2C2_2  1 nLrrHirkHtgekpyeCplCdkaFk 25
                +L+rHirkHtgekpy+C  C+k F+
  CCD25459.1 36 HLTRHIRKHTGEKPYHCGICSKNFS 60
                79**********************8 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.59
   zf-H2C2_2  1 nLrrHir.kHtg 11
                nL++H   +H++
  CCD25459.1 64 NLKQHEDcVHHK 75
                899**9966884 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   2.1   0.00064       2.3       1      23 [.      19      44 ..      19      45 .. 0.88
   2 !   14.6   0.3   1.3e-05     0.046       1      19 [.      50      68 ..      50      70 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00064
   zf-C2H2_4  1 fkCpi...CgksFsskkaLlrHlkth 23
                f+C+    C+  F++ ++L rH+++h
  CCD25459.1 19 FCCTGygeCSMAFTRAEHLTRHIRKH 44
                66777777*****************9 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.3e-05
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrH 19
                + C iC+k+Fs+ ++L++H
  CCD25459.1 50 YHCGICSKNFSRIDNLKQH 68
                89***************** PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2       1.1   3.9e+03       6      21 ..      27      42 ..      26      44 .. 0.81
   2 ?   13.2   0.4   2.4e-05     0.088       1      20 [.      50      69 ..      50      70 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
      zf-met  6 CnvtfnsesqlksHlq 21
                C + f+   +l  H +
  CCD25459.1 27 CSMAFTRAEHLTRHIR 42
                8899999999999954 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 2.4e-05
      zf-met  1 fyCelCnvtfnsesqlksHl 20
                ++C +C + f+   +lk+H 
  CCD25459.1 50 YHCGICSKNFSRIDNLKQHE 69
                89*****************6 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.8   0.00013      0.45       2      26 ..      50      75 ..      50      76 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
   zf-C2H2_6  2 heCsvCsksFpslqaLggHkks.Hrk 26
                + C +Csk F+ +++L  H  + H+k
  CCD25459.1 50 YHCGICSKNFSRIDNLKQHEDCvHHK 75
                6799****************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1125  (0.0627475); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2750.74
//
Query:       CCD25460.1  [L=638]
Description: hypothetical protein NDAI_0F01410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-66  224.8   0.1      1e-66  224.8   0.1    2.3  3  mRNA_triPase  mRNA capping enzyme, beta chain


Domain annotation for each model (and alignments):
>> mRNA_triPase  mRNA capping enzyme, beta chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.4      0.16   2.9e+03      81      81 ..      68      68 ..      19     155 .. 0.54
   2 ?   -3.1   1.3      0.28   5.1e+03      92     119 ..     284     310 ..     240     325 .. 0.50
   3 !  224.8   0.1   5.7e-71     1e-66       2     219 .]     369     587 ..     368     587 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.16
                  H CS
  mRNA_triPase 81 e 81
                  +
    CCD25460.1 68 S 68
                  2 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.28
                   CTTTEEEEEEEEEEEEEE-S-SSS--EE CS
  mRNA_triPase  92 krekvslkeskevDkfYelkkkeekski 119
                   ++ek+  ++ +++D+++e k++ +++k 
    CCD25460.1 284 NNEKT-SSKAEKIDNIFEEKASLQSKKN 310
                   22222.2333445666665544444444 PP

  == domain 3  score: 224.8 bits;  conditional E-value: 5.7e-71
                   -HHHHHHHHHHHHHHHHCTCCGGCCEEEEEEEEEEEETTTSSB---SBSS-EEE-TTCTEEEEE-B-HHHHHHHHHHHHHHHH..HTTCCCTTTEEE CS
  mRNA_triPase   2 deitksvsdwiiaaldniksekrsqiEiEaklGlivdkstkeRlklpvsteaivennadskfesgvdedqfkelnnfLnelsrrneeenskrekvsl 98 
                   d++tksv+dw++a++++i+++ r +iE+E+k+G+i+d +  +R+ +p+s++ai+++  ds+++++vde+ fkeln++++ +s    e n++ +k+s+
    CCD25460.1 369 DDLTKSVQDWVYATIHSIAPDLRPFIELEMKFGVIIDAKGPDRVSPPISSQAIFTDM-DSHLTPNVDESLFKELNKYIQGVS----ELNENSGKFSI 460
                   89*******************************************************.**********************88....8********** PP

                   EEEEEEEEEEE-S.-SSS--EEEEEEETTT--EEEEEEEEEEEEEEEE-TTSSSEEEEEEEEEEE-SSS..HHHCTTS--SEEEEEEEEEEEECCGT CS
  mRNA_triPase  99 keskevDkfYelk.kkeekskirvskdsenqevlkkieKeriadlniylPnsklDyriSinlElpvses..kaklskktpvseRlkeRlSyihkksg 192
                    es+++D++Y++  ++++++++r+s+d ++++v ++ieK+++a+l++++P++++D +iSinlElpv+e+  ++k+ +++pvs+R+keR+Syih++s+
    CCD25460.1 461 IESHTRDSVYRVGlSTQRPRFLRMSTDVKTGRVGQFIEKRHVAQLLLFSPKDSYDGKISINLELPVPENdpPEKYLSQSPVSQRTKERISYIHNDSC 557
                   ************999******************************************************999************************* PP

                   EEEEEEEE...SSS---S--EEEEEEEEEE CS
  mRNA_triPase 193 iqfDLtkv...ektektkkteekyElEiEi 219
                   +++D+tkv   +++ k+k+ e ++E+E+Ei
    CCD25460.1 558 TRIDITKVhnhNQGVKAKDVEVTHEIELEI 587
                   ********9865669**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1752  (0.0977188); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 4330.57
//
Query:       CCD25461.1  [L=339]
Description: hypothetical protein NDAI_0F01420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-23   81.0   0.0    1.4e-22   80.3   0.0    1.4  1  Glycos_transf_2  Glycosyl transferase family 2
    5.7e-06   26.4   0.0    9.5e-06   25.7   0.0    1.2  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
     0.0054   17.2   0.0      0.011   16.3   0.0    1.5  1  Glyco_tranf_2_4  Glycosyl transferase family 2
     0.0082   15.6   0.0      0.012   15.1   0.0    1.2  1  Glyco_tranf_2_2  Glycosyltransferase like family 2


Domain annotation for each model (and alignments):
>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   0.0     3e-26   1.4e-22       1     107 [.      82     196 ..      82     268 .. 0.79

  Alignments for each domain:
  == domain 1  score: 80.3 bits;  conditional E-value: 3e-26
                      EEEEEESS-TTTHHHHHHHHHHH...GGCCEEEEEEEEES-SSCHHHHHGGGCH.....C-TTEEEEEESSS-HHHHHHHHHHHH--SSEEEEE CS
  Glycos_transf_2   1 svviptyNeektlletlesllaq...dpypdfeiivvDDgStDetveileelak.....edprvrvirreenvGkagalnaglraatgdyilfl 86 
                      svv+p+yNe + + ++l+ +++        ++ei++vDDgS+D+t e + +la+      ++ +rv+++ en+Gk+ga+++g+ + +g+y lf 
       CCD25461.1  82 SVVVPSYNETERIFRMLNEAIKYlneSMSNRWEILIVDDGSKDGTTEYCLKLAEedfklTKGELRVLKLLENRGKGGAVREGMLHIRGRYGLFA 175
                      8********666666666666666666******************************9999********************************* PP

                      ESSEEE-TTHHHHHHHHHHH. CS
  Glycos_transf_2  87 DaDdepdpdwleklvealekd 107
                      DaD + +  ++ekl++  ++ 
       CCD25461.1 176 DADGASKFSDVEKLIASVKNM 196
                      **************9876654 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.1e-09   9.5e-06       4      97 ..      81     178 ..      80     183 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.1e-09
  Glyco_tranf_2_3   4 lavlVptfneedvlgevlesllaqey....prvevvvvvdesdaetlevaeelaa.alp..dvrvrvvvnarnlgstgksralnealravksdl 90 
                      l+v+Vp++ne++++ ++l++++++ +     r e+ +v+d+s+++t e +  la+ +++  + ++rv+   + l+ +gk  a+ e++ ++++++
       CCD25461.1  81 LSVVVPSYNETERIFRMLNEAIKYLNesmsNRWEILIVDDGSKDGTTEYCLKLAEeDFKltKGELRVL---KLLENRGKGGAVREGMLHIRGRY 171
                      79*********************954465455**************9986666542666668899999...5566677777777********** PP

  Glyco_tranf_2_3  91 vllvDdD 97 
                       l+ D+D
       CCD25461.1 172 GLFADAD 178
                      *****99 PP

>> Glyco_tranf_2_4  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.4e-06     0.011      20      81 ..     113     178 ..      88     189 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
  Glyco_tranf_2_4  20 drilvydndstDgtrailkelpevkllhvdksy......ederrqvellkallaryaeadwvlvvDaD 81 
                       +il++d++s+Dgt++++ +l+e ++  ++++       e++  + ++++ +l  + ++++ l++DaD
       CCD25461.1 113 WEILIVDDGSKDGTTEYCLKLAEEDFKLTKGELrvlkllENRGKGGAVREGML--HIRGRYGLFADAD 178
                      36****************99977665555544433555455555678888888..4579999999999 PP

>> Glyco_tranf_2_2  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.6e-06     0.012       1     129 [.      82     214 ..      82     248 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-06
  Glyco_tranf_2_2   1 svviplraseerhy..ieervlqkakyydeeielivvddgSsekfleevssiidlnllv......ylkdeddkayslaaarNrGaskaesdlvl 86 
                      svv+p +++ er +  ++e ++  +    +  e+++vddgS + + e   ++ +   +        lk    +  +++ a   G+ +  + + l
       CCD25461.1  82 SVVVPSYNETERIFrmLNEAIKYLNESMSNRWEILIVDDGSKDGTTEYCLKLAEEDFKLtkgelrVLKLL--ENRGKGGAVREGMLHIRGRYGL 173
                      79******999954224455544444447889***********999987776665544411100122222..25689999999*********** PP

  Glyco_tranf_2_2  87 FlDaDcfissDkfekilklitikklrenidaavvlpvvdlnke 129
                      F DaD       +ek++    +k++++  d   +lp + l   
       CCD25461.1 174 FADADGASKFSDVEKLIA--SVKNMEKTKDQNAILPAIALGSR 214
                      *****9888888888755..899****9999999999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       695  (0.038764); expected 358.6 (0.02)
Passed bias filter:                      609  (0.0339673); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2467.50
//
Query:       CCD25462.1  [L=486]
Description: hypothetical protein NDAI_0F01430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-43  147.7  11.3    4.8e-43  147.2  11.3    1.2  1  Cation_efflux  Cation efflux family


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.2  11.3   2.7e-47   4.8e-43       2     195 ..     125     341 ..     124     345 .. 0.93

  Alignments for each domain:
  == domain 1  score: 147.2 bits;  conditional E-value: 2.7e-47
  Cation_efflux   2 ilsllanlilalvelivglltnSlalladafhslsdlvsllllllalkls.rkppderfpfGygrlevlgalvsgllllglavfllleaiqkli.. 94 
                    +++l++n+++a+ ++++g++++S+al+ad++h+lsdlvs++l+l+++kl+   +p++++p+Gyg++e++g+l ++ +l +++v++ ++++ +++  
     CCD25462.1 125 WIGLASNVAMAVGKFVGGIVFHSQALFADSIHALSDLVSDFLTLFSVKLAtTSKPNRNYPYGYGKVETVGSLAVSTILAMAGVSIGWTSLCSIVgp 220
                    799********************************************************************************************* PP

  Cation_efflux  95 .......................kegereihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlks 167
                                           +  ++ + ++ a+++a++s+vv+ +++ ++++ + +++s +l a+a+h+++D+ltsl++lv++ ++++ n +s
     CCD25462.1 221 ivphvitetitgylgmsshghshSIVPEGVTNINAAWIAGGSIVVKEWIFQATKKIAVQTNSNVLMANAWHHRIDSLTSLVALVAITGSYFLNIQS 316
                    ******************877632233334566699***********************************************************9 PP

  Cation_efflux 168 gplaDpvaslligliilysalkllkesl 195
                       +D++++l+++ ++++++ + +  ++
     CCD25462.1 317 ---LDAIGGLAVSTLVVKAGGQGMYGAM 341
                    ...***************9987665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       636  (0.0354733); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3469.11
//
Query:       CCD25463.1  [L=207]
Description: hypothetical protein NDAI_0F01440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1464  (0.0816554); expected 358.6 (0.02)
Passed bias filter:                      660  (0.0368119); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 1462.42
//
Query:       CCD25464.1  [L=687]
Description: hypothetical protein NDAI_0F01450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.8e-166  554.5   0.0   2.2e-166  554.3   0.0    1.1  1  UPF0061   Uncharacterized ACR, YdiU/UPF0061 family


Domain annotation for each model (and alignments):
>> UPF0061  Uncharacterized ACR, YdiU/UPF0061 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  554.3   0.0  1.2e-170  2.2e-166       2     467 ..      49     644 ..      48     645 .. 0.97

  Alignments for each domain:
  == domain 1  score: 554.3 bits;  conditional E-value: 1.2e-170
     UPF0061   2 llkleyepaleslgsdfydeveaaefpkkilrvrndalleelgldeeevkdeelieifgke.......kgiepflalrYhGyQFGeynpqLGDGRgfll 93 
                 +++ +++p+++s+gs+f++++++++ ++k+++v++++l+++++ld    +d  + +i+++e       k+i+p+ +l+Y+GyQFG++++qLGDGR+++l
  CCD25464.1  49 RVEKFHTPRYVSSGSHFSFTTPMKRSHYKPILVSKETLENDFQLD--IENDPLIPKILSGEkiyydedKSIFPY-SLAYAGYQFGSFAGQLGDGRVVNL 144
                 57899***************************************9..88999**********************.************************ PP

     UPF0061  94 gqvrdkdgelydfglKGsGlTPySRsaDGrlvLksgvREvlasealhklgvrtsralslie.tgekllRedePspersavvvRlarshiRfGtferlky 191
                 +++++     ++f+lKGsG+TP+SR+aDG++vL+s++RE+++seal+++g++++ra++l+  +g+k++R+   ++e++a+v+R+a+s+iRfG+f+++k+
  CCD25464.1 145 FDYMN-----HTFQLKGSGKTPFSRFADGKAVLRSSIREFIISEALYNIGIPSTRAVQLTLlPGTKAIRD---GSEPCALVCRVAPSWIRFGSFDLFKW 235
                 ****9.....89************************************************99********...************************** PP

     UPF0061 192 lkrldllkkLldyviee....................yypeladee....................ekyaqfyaelvervAelvAqWmaaGFchgVlNT 250
                 +++l +l kL+dy+ie+                    y+p+ +dee                    ++y+qf++++v+++Ae+vA+W+a+GFc+gVlNT
  CCD25464.1 236 KPNLVGLIKLTDYCIEDvfhngegfpkdidlakfnkdYFPDSKDEEnisssslheekqdqeqkeglTNYDQFFRHVVNLNAECVAYWQAYGFCNGVLNT 334
                 ******************************************99999999999999******************************************* PP

     UPF0061 251 DNmsilGeslDYGPyaFldkydpkftaayfDyagrYsyanQpsiilwNLeqlaeplalli.................eaeeleeale............ 320
                 DN+si+G+slDYGP++Fldk++p+ft++++Dy++rYs+anQps+i+wNL qla+++a+l+                 ++++++++le            
  CCD25464.1 335 DNTSIMGISLDYGPFSFLDKFEPDFTPNHDDYTKRYSFANQPSVIWWNLIQLAQDIAVLLgagpkhindilqmqngeDIDKFDDDLEkefvnrannmir 433
                 **************************************************************999999999999999888888888899999******* PP

     UPF0061 321 ....eykevyttkYaqlmlkkLGl..............eklsekekefdselleellelLqetqvdYneffveLaeskskkwrdeaesileesekelee 401
                     eyk+++ttkYa+lm k+LG+              +kls +++ef++ ++++lle+Lq+t++dYn+ffv+L++++++++ +++ ++++  ++++ +
  CCD25464.1 434 lcssEYKYRFTTKYADLMGKRLGIdldlpkkltndvdlDKLSIEIQEFSTFIIDPLLEILQHTKIDYNNFFVNLQSYDGPFFVNDEGNLFNGLDEDFIK 532
                 *************************************************************************************99999999865555 PP

     UPF0061 402 ........................................ekleeWrelYkklleeleedeleeraerlkkvNpktvllrplieevieki......... 451
                                                         +kl+eW+ +Y++l++     ++e r++++kk+Np+++++++++eevi+++         
  CCD25464.1 533 iffkdeemrkikefyekasgdlnrttsrdsgetrflirtmDKLKEWCISYCRLVP-----DAEIRKSVAKKKNPLFIPRSWIFEEVIDNLtleqrekld 626
                 7777788889999******************************************.....6799*********************************** PP

     UPF0061 452 ..aeeddlsplkkllekl 467
                   +++ d+s+l+kl+ ++
  CCD25464.1 627 ypEADLDTSLLQKLHLMS 644
                 *999**********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 5071.21
//
Query:       CCD25465.1  [L=802]
Description: hypothetical protein NDAI_0F01460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-159  530.9  35.1   2.6e-159  530.5  35.1    1.1  1  TRP        Transient receptor potential (TRP) ion channel
    3.1e-40  137.7   0.9    5.4e-40  137.0   0.9    1.4  1  TRP_N      ML-like domain
  ------ inclusion threshold ------
       0.22   11.7   4.6       0.44   10.7   4.6    1.4  1  Dysbindin  Dysbindin (Dystrobrevin binding protein 1)


Domain annotation for each model (and alignments):
>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  530.5  35.1  4.3e-163  2.6e-159       1     425 [.     167     597 ..     167     598 .. 0.97

  Alignments for each domain:
  == domain 1  score: 530.5 bits;  conditional E-value: 4.3e-163
         TRP   1 vkwvtaviaglallasnasavastlgnsnaaahvaasvlslflyfQsvafigmlsv.nyPpvlaawtqnfaWsmglirvsfmqkiinwyvqstgGtatl 98 
                 v+w+taviag++ll+   sav+st+gns+aa+h++a+++slflyfQsva++gm++v ++Pp++aaw +n+aWsmg+irvsfmq+i++wyv+stgGta l
  CCD25465.1 167 VQWTTAVIAGIGLLL---SAVLSTFGNSTAASHISANTMSLFLYFQSVAVVGMQHVhSVPPIAAAWCENLAWSMGIIRVSFMQRIFRWYVESTGGTADL 262
                 89*************...********************************************************************************* PP

         TRP  99 vlsssstssvsvkral.........krgeskslpessskl.v.rGikrvaekagiestnafmtgllffliliallvvlvllfKlllellarkklikedr 186
                 +l+  +t+sv ++r+l         kr+++  +   ++++ + rGikrva+ ++ie+t++++tg++ff++++++l+ +++++K+ +el++r+++i++dr
  CCD25465.1 263 YLTA-TTMSVLTQRSLdylkslpliKRADN--VLYGNQNTlIfRGIKRVAYSMNIENTSVVCTGFTFFVLCGYVLAGFIMVCKYSIELCIRSGWIRNDR 358
                 ****.99********999999999866443..344445555779******************************************************* PP

         TRP 187 lkefrknwlgilkgallrlilifffqllvlclfeftqrdsaavvvlAvillalflgvllffafrvlitarkskrlhknpaylLysdkkvlnkyGflyeq 285
                 + efr++w+++lkg llr+i+i+f+ql++l+++eft+rdsaav+++A+++l+l +g++l++afr++++a++s++ h+npa+lLy+d+ vl+kyGf+y++
  CCD25465.1 359 FLEFRQHWRTVLKGSLLRYIYIGFTQLTILSFWEFTERDSAAVIIIACLFLVLSIGLMLWAAFRTCFFAKRSIKAHNNPAALLYGDEYVLHKYGFFYTM 457
                 *************************************************************************************************** PP

         TRP 286 yrasrywffvpllvylfvkalfialaqgsGkvQvialliiEllylvlliwlrPyedkrtnvlniiisvvkvlnvilllaFseefglseivktvvGvvli 384
                 ++a++yw+ ++ll y+f+k+lfi++aq+sGk+Q++a++i++l+y++++i ++Py d+ tn++ni+i++v+v+n++l+++Fs+ fg++ +v++++G+v++
  CCD25465.1 458 FNANHYWWNIVLLGYIFIKSLFIGFAQASGKTQALAIFIFDLAYFIAIIRYKPYLDRPTNIVNIFIATVTVVNSFLFMFFSDLFGQPYAVSAIMGWVFF 556
                 *************************************************************************************************** PP

         TRP 385 vinavlalvlliliivnaiiallsknpdrryrpakddresf 425
                 ++na+++++ll++++  + +a++sknpd r++ a+ddr+sf
  CCD25465.1 557 ILNAAFSFLLLMMVLAFTGMAIFSKNPDLRFKSARDDRASF 597
                 ***************************************98 PP

>> TRP_N  ML-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.0   0.9   9.1e-44   5.4e-40       1     139 []      27     162 ..      27     162 .. 0.97

  Alignments for each domain:
  == domain 1  score: 137.0 bits;  conditional E-value: 9.1e-44
       TRP_N   1 lvtssfenClensqftaskfdvtftpdnktvvfnvtgtssienkavtlelkveaygyevvnetvdpCdanvkglCPlgpgfkinasgvlkvseevvsei 99 
                 lv++s+ +C+ensq++ + fdv+f+pd++++++ ++++++i+++ + ++++v+ayg++++++tvd+Cd+n+k++CP++pg +i++++++++s+e+v+ei
  CCD25465.1  27 LVATSLVTCMENSQVSSNSFDVVFNPDDRSLHYTLDMVTQIDSY-IFADVDVYAYGFKIITKTVDLCDINWKQFCPVHPG-NIEIDSIQYISQEYVNEI 123
                 67899**************************************9.***********************************.****************** PP

       TRP_N 100 psiaYsipdldatvrvriystgeateiaCvsatitngktv 139
                 p+iaY++pd+da+vr+++  ++ ++++aC+++ ++ngktv
  CCD25465.1 124 PGIAYTVPDIDAYVRLNVR-NNVSERLACLEVFFSNGKTV 162
                 ****************999.55889**************7 PP

>> Dysbindin  Dysbindin (Dystrobrevin binding protein 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.6   7.4e-05      0.44      74     139 ..     641     712 ..     639     721 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.4e-05
   Dysbindin  74 DqEaldVFldsdgeenaleSpagl......peassaqneislrvpsqtelkaelssesssstdseseneeag 139
                 D+E  +VF+ sd++e++ +S ++       ++ +++ +e +lr  s ++ k+++s+e +ss+ ++++ +e++
  CCD25465.1 641 DKEKENVFIGSDEDEDKFASSLSVneasriSGRKPTLSEKFLRTFSIRRNKSKVSRELNSSAPNDRSAQESS 712
                 99******************9998555444444444889999999999999999999888877777555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1140  (0.0635841); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 5272.30
//
Query:       CCD25466.1  [L=217]
Description: hypothetical protein NDAI_0F01470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    9.5e-41  139.8   0.6    1.1e-40  139.5   0.6    1.0  1  Ribosomal_L1  Ribosomal protein L1p/L10e family


Domain annotation for each model (and alignments):
>> Ribosomal_L1  Ribosomal protein L1p/L10e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5   0.6   6.2e-45   1.1e-40       2     204 .]      17     212 ..      16     212 .. 0.95

  Alignments for each domain:
  == domain 1  score: 139.5 bits;  conditional E-value: 6.2e-45
                   HHHS....-SSS--EEEEEEEESSS-TTSGGG--EEEEE-STSTSSCS-EEEEE-HHHHH...HHHHTT..-SEEETCHHHHHHT-HHHHHHTCCH- CS
  Ribosomal_L1   2 lkha....kkkfdesveialnlttkkpkkadqrkpgkipLphplgkevkiclitkdpqaeyakeakeagriakviglkklkkkyksfeakrkllkef 94 
                   lk++    k++f e+ve+++ l++++p++ d+r++g+++Lp + + ++++c++ +  + +    ak++g   + +++++lkk  k+++  +kl k++
    CCD25466.1  17 LKYStetkKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPVCPRPNMSVCIFGDAFDVD---RAKSCG--VDAMSVDDLKKLNKNKKLIKKLSKKY 107
                   5555555477899*************666.99*************************999...9*****..************************** PP

                   SEEEEEGGGHHHHHHHCHHHHGGGT-S-ECC..CT.BTS-HHHHHHHHCTTEEEEE-TTTSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTSTTTSG CS
  Ribosomal_L1  95 dlfladdrimpllpklLGkvfgkrkkmPipvltkgtvkedvkkevekalkstvvvrldkgtclsvkvGklsftaeelaeNieavvkalvekvpkkwk 191
                   + f+a++ +++++p+lLG++++k++k+P+pv ++   ++d+  +v ++ + t++++l+k  cl+v+vG+++++++ l+  i   v++lv+ ++k+w+
    CCD25466.1 108 NAFIASEVLIKQVPRLLGPQLSKAGKFPTPV-SH---NDDLYGKVTDVRS-TIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFLVSLLKKNWQ 199
                   *******************************.43...79***********.********************************************** PP

                   SEEEEEEEETTS- CS
  Ribosomal_L1 192 niksiylkttmsp 204
                   n+ s+++k++m+p
    CCD25466.1 200 NVGSLVVKSSMGP 212
                   ************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1664.74
//
Query:       CCD25467.1  [L=490]
Description: hypothetical protein NDAI_0F01480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-15   57.8   3.2      3e-15   57.0   2.8    1.8  1  Cyclin    Cyclin


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   2.8   1.6e-19     3e-15      49     158 ..     348     463 ..     236     466 .. 0.86

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.6e-19
                 .......T--SS--SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH.........H-TT---STTTHHHHHHHHHHHHHHHH-SS---HHHHHHHHT CS
      Cyclin  49 qtpkessFatkavpaisigsylsrlqkfgesaplvllgtliYldrivk.......rcvsealvvtsanihRllivallvatKflvDlsysnekfakvgg 140
                  t+   +F  k+ p++s  + l+r+q+ +     +++++  Yl++i+        + ++ +  ++ + ihR++i+ ++vatK ++D++ s+++f kv g
  CCD25467.1 348 DTKDYVNFTMKNTPSLSYEDFLKRIQSKCMFGAIIYMSAT-YLFQILLlnrddskGPIKLKNKLQEVEIHRMIIATIRVATKLVEDFVHSHQYFCKVCG 445
                 4555678999999************************985.888887778888888899999************************************* PP

                 S-HHHHHHHHHHHHHHTT CS
      Cyclin 141 islkELnkLEidFlflvd 158
                 +s + L kLE++ ++ + 
  CCD25467.1 446 VSKRLLSKLEVSLILALK 463
                 ***********9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3452.48
//
Query:       CCD25468.1  [L=190]
Description: hypothetical protein NDAI_0F01490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-64  214.9   0.0    5.9e-64  214.7   0.0    1.0  1  Arf        ADP-ribosylation factor family
    7.4e-09   35.2   0.7    1.3e-05   24.5   0.1    2.7  2  G-alpha    G-protein alpha subunit
    6.3e-08   32.4   0.0    7.1e-08   32.2   0.0    1.1  1  Ras        Ras family
    1.7e-07   30.9   0.0    2.1e-07   30.6   0.0    1.1  1  SRPRB      Signal recognition particle receptor beta subunit
    1.7e-06   28.3   0.0    4.6e-06   26.8   0.0    1.7  1  Roc        Ras of Complex, Roc, domain of DAPkinase
      1e-05   25.6   0.0    1.4e-05   25.2   0.0    1.2  1  MMR_HSR1   50S ribosome-binding GTPase
    8.4e-05   22.0   0.0    9.5e-05   21.9   0.0    1.1  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
     0.0029   17.2   0.1       0.05   13.1   0.0    2.0  2  GTP_EFTU   Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
       0.16   11.4   0.0         23    4.6   0.0    2.5  2  SHNi-TPR   SHNi-TPR
       0.21   11.3   0.0       0.46   10.2   0.0    1.5  2  PduV-EutP  Ethanolamine utilisation - propanediol utilisation


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.7   0.0   3.3e-67   5.9e-64       2     175 .]      10     190 .]       9     190 .] 0.96

  Alignments for each domain:
  == domain 1  score: 214.7 bits;  conditional E-value: 3.3e-67
                 HHHHHGGTT.TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHH CS
         Arf   2 lsilaklklkkkelrilllGLDnaGKtTilkklkleelvttvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleea 100
                  ++la+l l++k+ ++l+lGLDnaGKtT+l++lk+++l+t +PT+++++eel+i n+kft++D+GG+ ++R+lWk+Yf+++++++f+vD+ad eR+ ea
  CCD25468.1  10 RDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELSIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFPEA 108
                 6899*********************************************************************************************** PP

                 HHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSS.......SSSSEEEEEEBTTTTBTHHHHHHHHHHHH CS
         Arf 101 keeLkalleeeelkevallvlaNKqDlpealseeelrellgleelk.......gkrkleiqkcsavkgeglkeglewlsesi 175
                 + eL+al++  elk+v++++l+NK+D+++a+ e elr++l+l++ +       g r++e+++cs+v+++g+ eg++wls++i
  CCD25468.1 109 QVELDALFNIAELKDVPFVILGNKIDAATAVGEPELRRALNLQNTTgsaptteGVRPVELFMCSVVMRTGYAEGFQWLSQYI 190
                 ********************************************55555555699************************986 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1   0.00054      0.97      23      44 ..      22      43 ..      15      49 .. 0.88
   2 !   24.5   0.1   7.4e-09   1.3e-05     180     280 ..      45     134 ..      43     136 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00054
                EEEEEEEESTTSSHHHHHHHHH CS
     G-alpha 23 evkllllGqseSGKsTilkqlk 44
                + kll+lG +  GK+T+l  lk
  CCD25468.1 22 HGKLLFLGLDNAGKTTLLHMLK 43
                669***************9987 PP

  == domain 2  score: 24.5 bits;  conditional E-value: 7.4e-09
                 HHHCS-----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS-TTSBHHHHHHHHHHCCCC-GGGTTSEEEEEEE- CS
     G-alpha 180 DilkarlktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlyedekvnrleeslklFkeicnnkllkntpiiLflnK 278
                 D l + ++t   +  +++++ +++f+ +d+gG+ + r+ W+ +f +v+ i+Flv  +        d+   r+ e+    ++++n ++lk++p++++ nK
  CCD25468.1  45 DRLATLQPTWHPTSEELSIG-NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA--------DP--ERFPEAQVELDALFNIAELKDVPFVILGNK 132
                 66777788899999999999.********************************9743........33..455555555555555555555555555555 PP

                 HH CS
     G-alpha 279 lD 280
                 +D
  CCD25468.1 133 ID 134
                 55 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0     4e-11   7.1e-08       1     131 [.      24     157 ..      24     190 .] 0.78

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 4e-11
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Kl+++G  + GKt+ll+   +d+   + ++T     + ++ e++  ++k++ +D  G  + ++l + y+ +++gi+ + d  + e f +++  ++ + +
  CCD25468.1  24 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTW----HPTSEELSIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFPEAQVELDALFN 117
                 899*************998888875.568998....555566666789*************************************************** PP

                 HST.TTSEEEEEEETTTGGG.......G-SS-HHHHHHHH CS
         Ras 100 vae.envpivLvGnKvDlee.......kravsteegeela 131
                 +ae ++vp+v++GnK+D ++       +ra++ ++    a
  CCD25468.1 118 IAElKDVPFVILGNKIDAATavgepelRRALNLQNTTGSA 157
                 ***999***********99866666664444444333333 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.2e-10   2.1e-07       4     137 ..      23     148 ..      20     154 .. 0.77

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 1.2e-10
                 -EEEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG...GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHHHH CS
       SRPRB   4 pavllvGlsdsGKTslftrLttdsvkktvtSqessaalkvksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEllyei 102
                  ++l++Gl ++GKT+l++ L +d   + +   ++++ + + s  + k+t  D+ Gh + r   +++     ++ g+vf+vD+ +dp +  e    l  +
  CCD25468.1  23 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEE-L-SIGNIKFTTFDLGGHIQARRLWKDY---FPEVNGIVFLVDA-ADPERFPEAQVELDAL 115
                 5789*******************887777666665443.3.46899************98765555...789*********6.5777777754444444 PP

                 HHHHHHHTT---EEEEEE-TTSTT---HHHHHHHH CS
       SRPRB 103 lliteklkdavdiliACnKqelflakspklikdaL 137
                   i e l + v+++i  nK + ++a  +  ++ aL
  CCD25468.1 116 FNIAE-L-KDVPFVILGNKIDAATAVGEPELRRAL 148
                 44444.4.458899999******998888888777 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   2.6e-09   4.6e-06       1     119 [.      24     134 ..      24     135 .. 0.77

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 2.6e-09
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K++++G  ++GKt+ll+ + +d+  + + +t   +   +e+          ++ ++k+  +D++G+ + r l + y+ e + +++++d    +++ +++
  CCD25468.1  24 KLLFLGLDNAGKTTLLHMLKNDRLATLQ-PTWHPTS--EEL----------SIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDaadPERFPEAQ 109
                 89*****************999886544.4443332..222..........234689****************************99943344555667 PP

                 HHHHHHHHHCS..SS-EEEEEE-TT CS
         Roc  97 eWlkelkkvag..kspvilvgnkiD 119
                   l+ l + a+  + p++++gnkiD
  CCD25468.1 110 VELDALFNIAElkDVPFVILGNKID 134
                 778888777764256999******9 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   7.6e-09   1.4e-05       2      97 ..      25     112 ..      24     132 .. 0.69

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 7.6e-09
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT......TTCSHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdas......eeklkpld 94 
                  +++G  N+GK+tL+  l +++    ++ + T +++ +++++++ +++  D+ G i+     ++l k++    e++ i+++vda+      e      +
  CCD25468.1  25 LLFLGLDNAGKTTLLHMLKNDRL---ATLQPTWHPTSEELSIGNIKFTTFDLGGHIQ----ARRLWKDYFP--EVNGIVFLVDAAdperfpE-----AQ 109
                 5799**************99865...34677888888888888889********887....6677788886..789*******887544431.....22 PP

                 HHH CS
    MMR_HSR1  95 eel 97 
                  el
  CCD25468.1 110 VEL 112
                 222 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   5.3e-08   9.5e-05       1     131 [.      24     143 ..      24     180 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 5.3e-08
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre.leedletl 98 
                 k+L++G  ++GKt++  +    +      +l+ t + + +e+   gn+++  +D+gG  +          ++ f +v+ +++++D+ + e ++e+  +l
  CCD25468.1  24 KLLFLGLDNAGKTTLLHM----LKNDRLATLQPTWHPTSEEL-SIGNIKFTTFDLGGHIQARR-----LWKDYFPEVNGIVFLVDAADPErFPEAQVEL 112
                 89***********98765....45566778************.79************977654.....45789**************887566666666 PP

   Gtr1_RagA  99 keilealrqyspeakvfvlihKmDliqederee 131
                   ++ ++ +  +++ + +l +K+D  +   + e
  CCD25468.1 113 DALF-NIAEL-KDVPFVILGNKIDAATAVGEPE 143
                 5544.45444.6888999999999877544444 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.064   1.1e+02       6      23 ..      25      42 ..      20      59 .. 0.80
   2 !   13.1   0.0   2.8e-05      0.05      70     140 ..      66     145 ..      51     172 .. 0.82

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.064
                EEEEESTTSSHHHHHHHH CS
    GTP_EFTU  6 igiighvDhGKtTLtdrL 23
                + ++g  ++GKtTL+  L
  CCD25468.1 25 LLFLGLDNAGKTTLLHML 42
                666777789*****9876 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.8e-05
                 EEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB.....STHHHHHHHHHHHHTTTEEEEEEESCGST....HHHHH CS
    GTP_EFTU  70 ylinliDtPGHvdFskevirglrvlDgavlvvdaveG.....vepqteevlrlalkegvpiivfiNKmDrl....kaelk 140
                  +++  D  GH++  +        ++g v++vda++       ++    ++++a  ++vp++++ NK+D +    + el+
  CCD25468.1  66 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPerfpeAQVELDALFNIAELKDVPFVILGNKIDAAtavgEPELR 145
                 6677788888888888888888999**********877785577777799*******************99666644444 PP

>> SHNi-TPR  SHNi-TPR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.017        31      15      25 ..     103     113 ..     102     114 .. 0.89
   2 ?    4.6   0.0     0.013        23      23      33 ..     143     153 ..     142     157 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.017
    SHNi-TPR  15 enFpqAveDlr 25 
                 e+Fp+A+ +l+
  CCD25468.1 103 ERFPEAQVELD 113
                 9******9996 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.013
    SHNi-TPR  23 DlrkaLeLreq 33 
                 +lr+aL+L+++
  CCD25468.1 143 ELRRALNLQNT 153
                 79*******87 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00026      0.46       3      26 ..      24      47 ..      22      54 .. 0.90
   2 ?   -3.7   0.0         5     9e+03      92     111 ..      90     108 ..      88     114 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00026
   PduV-EutP  3 killiGkvgsGKttLtqalkgeel 26
                k+l++G  ++GKttL + lk+++l
  CCD25468.1 24 KLLFLGLDNAGKTTLLHMLKNDRL 47
                899*****************9887 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5
   PduV-EutP  92 viGiitkidlaedeenieav 111
                 v Gi+  +d a d e+   +
  CCD25468.1  90 VNGIVFLVDAA-DPERFPEA 108
                 55777777776.55555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       304  (0.0169558); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1405.56
//
Query:       CCD25469.1  [L=1183]
Description: hypothetical protein NDAI_0F01500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-87  293.4   0.8    1.9e-87  293.4   0.8    3.1  2  RIBIOP_C      40S ribosome biogenesis protein Tsr1 and BMS1 C
    2.5e-29  101.2   0.1    1.2e-28   99.0   0.0    2.4  2  AARP2CN       AARP2CN (NUC121) domain
    8.9e-06   26.2   0.1    3.4e-05   24.3   0.0    2.1  1  AAA           ATPase family associated with various cellular 
    1.6e-05   24.6   4.4     0.0012   18.4   0.0    3.6  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    4.3e-05   23.7   0.0    0.00021   21.5   0.0    2.2  1  AAA_33        AAA domain
    5.6e-05   23.6   0.0    0.00017   22.1   0.0    1.8  1  AAA_16        AAA ATPase domain
     0.0032   17.8   0.0      0.012   15.9   0.0    2.0  1  AAA_22        AAA domain
     0.0057   15.9   0.4      0.021   14.0   0.0    2.0  2  NB-ARC        NB-ARC domain
     0.0069   16.8   0.0      0.019   15.4   0.0    1.8  1  RNA_helicase  RNA helicase
     0.0077   16.0   0.2     0.0077   16.0   0.2    4.4  2  AAA_11        AAA domain
  ------ inclusion threshold ------
      0.011   16.1   0.1      0.028   14.8   0.1    1.6  1  AAA_19        AAA domain
      0.016   14.8   0.1      0.034   13.7   0.1    1.5  1  cobW          CobW/HypB/UreG, nucleotide-binding domain
      0.016   15.3   0.2      0.063   13.4   0.2    2.1  1  MMR_HSR1      50S ribosome-binding GTPase
      0.016   14.7   0.0      0.039   13.5   0.0    1.6  1  AAA_7         P-loop containing dynein motor region
      0.017   15.0   0.2      0.059   13.3   0.0    2.1  1  MobB          Molybdopterin guanine dinucleotide synthesis pr
      0.019   14.7   0.0      0.045   13.5   0.0    1.5  1  AAA_30        AAA domain
      0.019   14.9   0.0      0.046   13.6   0.0    1.6  1  NACHT         NACHT domain
       0.02   15.2   0.0      0.065   13.5   0.0    1.9  1  AAA_28        AAA domain
      0.021   14.9   0.0      0.062   13.3   0.0    1.8  1  AAA_5         AAA domain (dynein-related subfamily)
      0.025   15.1   0.0      0.025   15.1   0.0    2.7  2  ABC_tran      ABC transporter
      0.041   14.4   0.0      0.041   14.4   0.0    4.1  3  AAA_18        AAA domain
      0.061   13.2   0.2       0.13   12.2   0.2    1.5  1  NTPase_1      NTPase
       0.16   11.9   0.7        1.8    8.4   0.1    2.8  3  RsgA_GTPase   RsgA GTPase
       0.42   10.4   0.0       0.42   10.4   0.0    2.0  1  ATP_bind_1    Conserved hypothetical ATP binding protein


Domain annotation for each model (and alignments):
>> RIBIOP_C  40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       6.4   4.7e+03      27      74 ..     591     637 ..     578     653 .. 0.63
   2 !  293.4   0.8   2.5e-90   1.9e-87       4     291 ..     709    1008 ..     678    1009 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 6.4
    RIBIOP_C  27 wdpken.lpeeyarifefenfketkkrvlkealeeregvegGtyvrlei 74 
                   ++++  p+ +a++ +f  + +t ++++++  +  + + +  ++   i
  CCD25469.1 591 DGVNDKsSPDYQADLEKFVPYFDTLEKLMSKWSN--VDAIQNRFIGANI 637
                 3333334788888999999999999999997666..3333344444444 PP

  == domain 2  score: 293.4 bits;  conditional E-value: 2.5e-90
    RIBIOP_C    4 pedvearerfakyrglkslrtsewdpkenlpeeyarifefenfketkkrvlkeale............eregveg...Gtyvrleiknvpeelveek 85  
                  + ++e++ +++k+++l+  ++ e    en + e +   e+++++e +k++++++le            +r+++eg   G+yvr++++nvp e++e  
  CCD25469.1  709 TTEQERELNASKKEKLRLQFEMEE--GENFK-EDDPDNEYDTWYELQKAKIAKQLEinnaelqemtpeQRQRIEGfkaGSYVRIVFDNVPMEFIE-- 800 
                  556666677777888877777665..33322.2222333444444444444433333444445677774444444555*****************.. PP

    RIBIOP_C   86 nfdekkplivfgllphEekvsvvnvrikrhreyekpikskdplifsvGfRrfqakPifsqedtknnkhklerylkpght.cvatfygpitfpntpvl 181 
                  nfd+k+p+i++gllp+E k+++vn+r++rhr+++k++ks+dpl++s+G+Rrfq+ Pi++++d +++++++++y+ p+ht c a+f+gp++ pntp++
  CCD25469.1  801 NFDPKYPVIMGGLLPTEMKFGIVNARLRRHRWHKKILKSNDPLVLSLGWRRFQTLPIYTTSD-SRTRTRMLKYT-PEHTfCNASFFGPLCSPNTPFC 895 
                  9*************************************************************.6**********.99999***************** PP

    RIBIOP_C  182 afkel..sskeasfrlvatGsvlevdpsriivkrivLtGhpfkihkktaviryMFfnpedvawFkpveLrTksGrrGhIkeslgt.hGyfkatFddk 275 
                   ++ +  s++ ++fr++atG v e+d + +ivk+++L+G p+ki+k+ta+i++MF ++ +va F++++++T+sG+rG+Ik++l++ +G+f+a F+dk
  CCD25469.1  896 GVQIVanSDTGGGFRISATGIVEEIDVNVEIVKKLKLVGFPYKIFKNTAFIKDMFSSAMEVARFEGAQIKTVSGIRGEIKRALSKpEGHFRAAFEDK 992 
                  ***5544777899************************************************************************9*********** PP

    RIBIOP_C  276 lkqsDiVlmslYkrvf 291 
                  + +sDiV+++ +++v 
  CCD25469.1  993 ILMSDIVVLRSWYPVT 1008
                  *************996 PP

>> AARP2CN  AARP2CN (NUC121) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.0   1.7e-31   1.2e-28       1      86 []     219     307 ..     219     307 .. 0.95
   2 ?   -2.8   0.2       9.4     7e+03      15      21 ..    1128    1134 ..    1081    1161 .. 0.57

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 1.7e-31
     AARP2CN   1 EilnllrfisvqkfrplswReqrpyiladrveiltdseske.eeskedrtlsveGyvrGsplsa..nqlvHipglGDfqiekieklpdP 86 
                 Eilnl+rfisv+kfrpl+wR+++py+ladr+++lt++e +e + +++dr+++++G+++G+pls+  +++vHi+g+GDf i++ieklpdP
  CCD25469.1 219 EILNLSRFISVMKFRPLKWRNEHPYLLADRITDLTHPELIEtQGKQIDRKVALYGFLHGTPLSTisGTKVHIAGVGDFPISQIEKLPDP 307
                 89*************************************98678899***************653378********************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 9.4
     AARP2CN   15 rplswRe 21  
                  ++   R+
  CCD25469.1 1128 KKADQRK 1134
                  2223333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.5e-08   3.4e-05       3      65 ..      74     143 ..      72     144 .. 0.73

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 4.5e-08
                 EESSTTSSHHHHHHHHHHHH.THEEEEEETTTCSSS.......STTHHHHHHHHHHHHHHHTSTSEEEEEE CS
         AAA   3 lyGppGtGKTllakavakel.gvefleisgsellsk.......yvgesekkirelfkeakekakpsilfiD 65 
                 ++GppGtGKT+l+k++++ + ++++ ei+g+  + +       +++  +++++ +++ ak +   + l+iD
  CCD25469.1  74 VVGPPGTGKTTLIKSLIRRMtKSTLNEINGPITVVSgkhrrltILECPANDLNSMIDVAKVSD-LVLLMID 143
                 79*****************85688888888877722356666566667777777777777765.6666666 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0      0.02        15       6      29 ..      72      95 ..      69     103 .. 0.85
   2 !   18.4   0.0   1.6e-06    0.0012      69     153 ..     112     197 ..     101     289 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.02
                EEEEESTTSSHHHHHHHHHHHTTS CS
    GTP_EFTU  6 igiighvDhGKtTLtdrLlyktga 29
                ++++g   +GKtTL+ +L+ +  +
  CCD25469.1 72 VSVVGPPGTGKTTLIKSLIRRMTK 95
                789***************977655 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.6e-06
                 SEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEE.EEESCGST..HHHHHHHHHHHHHHHHHH CS
    GTP_EFTU  69 kylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqteevlrlalkegvpiiv.fiNKmDrl..kaelkeiveevkqklsrk 153
                 +++++++ +P   +  + +i  ++v D+++l++d + G e+ t e l+la+ +g+p+++ + + +D    +++l+ +++ +k+++ ++
  CCD25469.1 112 HRRLTILECPA--NDLNSMIDVAKVSDLVLLMIDGNFGFEMETMEFLNLAQHHGMPRVLgVATHLDLFksQSTLRATKKRLKHRFWTE 197
                 55556666663..336789999**********************************66526789999999999999999999999333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.8e-07   0.00021       2     120 ..      72     186 ..      71     200 .. 0.71

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.8e-07
      AAA_33   2 vllvGlpGsGKstlaerllkklgavllssdtlrrrlfgtdqqsktdytrvldr.lyqilnelarkalsagrnvildatnlsrrerarflklarrlgvpv 99 
                 v +vG+pG+GK+tl+++l+++ +  +l++ +   +++  + +++t   ++  + l+ ++ ++a  + s    +++d  + ++ e ++fl+la+++g+p 
  CCD25469.1  72 VSVVGPPGTGKTTLIKSLIRRMTKSTLNEINGPITVVSGKHRRLTI-LECPANdLNSMI-DVA--KVSDLVLLMIDGNFGFEMETMEFLNLAQHHGMP- 165
                 779****************999988888877655666554555554.444444144444.777..5788889999*********************99. PP

      AAA_33 100 rivvvetdeetlkeRlakRaa 120
                 r++ v t  ++ k++   Ra 
  CCD25469.1 166 RVLGVATHLDLFKSQSTLRAT 186
                 444444444444444444444 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.2e-07   0.00017      15      63 ..      58     115 ..      50     136 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.2e-07
      AAA_16  15 alervrsgrp..elvllsGesGvGKsslvrellralekd......g.giflrgkcdql 63 
                 +++r+ +++p   +v ++G++G+GK++l+++l r+++k+      g + +++gk ++l
  CCD25469.1  58 MVDRTPDDDPppFIVSVVGPPGTGKTTLIKSLIRRMTKStlneinGpITVVSGKHRRL 115
                 5677777777777999**********************99999986466699998887 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.6e-05     0.012       8      38 ..      72     111 ..      70     136 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.6e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.........e 38 
                 + v+G++GtGKTtl++ l ++ ++    e          +
  CCD25469.1  72 VSVVGPPGTGKTTLIKSLIRRMTKSTLNEIngpitvvsgK 111
                 679***************9997544333335555555553 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.8e-05     0.021      16      44 ..      65      93 ..      58     126 .. 0.86
   2 ?   -2.3   0.7       2.7     2e+03      39      99 ..    1080    1140 ..    1077    1145 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.8e-05
                TTSCSEEEEEEESTTSSHHHHHHHHCCSH CS
      NB-ARC 16 delqslvvalvGmgGvGKttlakqilnks 44
                d++  ++v++vG +G GKttl+k+ ++ +
  CCD25469.1 65 DDPPPFIVSVVGPPGTGKTTLIKSLIRRM 93
                677779*****************988874 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 2.7
                  HHCCSHCCCCCCBTEEEEEEE.ESXXHHHHHHHXXHHHHHCCCTTSSSS-STTSHHHHHHHH CS
      NB-ARC   39 qilnksdevegrFdsvawvvv.sktdkseeiletilkeLslseddleekeeveslkrklvrl 99  
                  qi++   + ++++     vv+ +++ k ++ ++++l +  +++d+ ++ ++ +++k++l rl
  CCD25469.1 1080 QIHQMKPQKKKTYMQKRAVVLgGEEKKARSFMQKVLTVS-KAKDEKKKAKKADQRKERLKRL 1140
                  677777777777774444444156667778888777654.4445555555555588877765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.5e-05     0.019       2      29 ..      73     100 ..      72     136 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.5e-05
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklk 29 
                    ++Gp+g+GK+tl+k+L+++++k+  ++
    CCD25469.1  73 SVVGPPGTGKTTLIKSLIRRMTKSTLNE 100
                   589*******************887433 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2     1e-05    0.0077      19      45 ..      71     102 ..      51     124 .. 0.74
   2 ?    0.5   7.5      0.55   4.1e+02      89     188 ..    1096    1155 ..    1022    1178 .. 0.51

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1e-05
      AAA_11  19 itliqGPPGtgKTktivellsqllsr.....r 45 
                 i+ + GPPGtgKT+ i +l+++++++     +
  CCD25469.1  71 IVSVVGPPGTGKTTLIKSLIRRMTKStlneiN 102
                 56789******************644443331 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.55
      AAA_11   89 kivRvgneeeriseavksvsleekvekrlekeekaqlakeiskeleklakelrafeeeeekeklkkskekskskleqerrklkkerkelskeleeae 185 
                  + v +g ee+++++ +++v + +k                                        +k ++k+++k+ q+++ lk+ +k  +++ ++++
  CCD25469.1 1096 RAVVLGGEEKKARSFMQKVLTVSK----------------------------------------AKDEKKKAKKADQRKERLKRLAKAEEEKTQKDK 1152
                  222222222222222222222222........................................222222222222222222222222222222222 PP

      AAA_11  186 esl 188 
                  e+ 
  CCD25469.1 1153 EKK 1155
                  222 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   3.7e-05     0.028      13      38 ..      72      97 ..      67     115 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.7e-05
      AAA_19 13 llvtaGpGtGKTrvlkhivallvelg 38
                + v+++pGtGKT+++k  ++ + + +
  CCD25469.1 72 VSVVGPPGTGKTTLIKSLIRRMTKST 97
                6799***************9998765 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   4.6e-05     0.034       3      28 ..      72      97 ..      70     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4.6e-05
                EEEEESTTCCHHHHHHHHHCT--SS- CS
        cobW  3 tvltGflGsGKTtLlnhllenraglk 28
                + ++G++G+GKTtL+++l+++  +  
  CCD25469.1 72 VSVVGPPGTGKTTLIKSLIRRMTKST 97
                6799***************7766655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   8.5e-05     0.063       2      25 ..      72      97 ..      71     171 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.5e-05
                EEEEESTTSSHHHHHHHHHTS..TEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge..kai 25
                v +vG p +GK+tLi++l+++  k+ 
  CCD25469.1 72 VSVVGPPGTGKTTLIKSLIRRmtKST 97
                789****************9843333 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.2e-05     0.039      36      64 ..      72     100 ..      70     119 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.2e-05
       AAA_7  36 vllvGptGtGKtviikdllkkldkekyls 64 
                 v +vGp GtGKt++ik+l++++ k++++ 
  CCD25469.1  72 VSVVGPPGTGKTTLIKSLIRRMTKSTLNE 100
                 568*******************9877665 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   7.9e-05     0.059       1      28 [.      71      98 ..      71     142 .. 0.93

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 7.9e-05
        MobB  1 vlgivgksgsGKTtLleklipelkargl 28
                ++++vg  g+GKTtL++ li+ ++++ l
  CCD25469.1 71 IVSVVGPPGTGKTTLIKSLIRRMTKSTL 98
                6899*****************9998765 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   6.1e-05     0.045      21      44 ..      72      95 ..      69     116 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 6.1e-05
      AAA_30 21 avltGpAGtGKttalkalreawea 44
                + ++Gp+GtGKtt++k+l + +++
  CCD25469.1 72 VSVVGPPGTGKTTLIKSLIRRMTK 95
                5689************99555544 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   6.2e-05     0.046       3      31 ..      72     100 ..      71     120 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.2e-05
                 EEEEC-TTTCHHHHHHHHHHHHCTS-SCC CS
       NACHT   3 vilqGeaGsGKTtLlqklalawaegklpq 31 
                 v + G++G GKTtL+++l++ + +++l++
  CCD25469.1  72 VSVVGPPGTGKTTLIKSLIRRMTKSTLNE 100
                 6799*******************999987 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   8.7e-05     0.065       2      25 ..      72      95 ..      71     124 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 8.7e-05
      AAA_28  2 ivitGgestGKTtlleaLaargyp 25
                + ++G+++tGKTtl++ L +r ++
  CCD25469.1 72 VSVVGPPGTGKTTLIKSLIRRMTK 95
                5689**************988443 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   8.3e-05     0.062       4      27 ..      74      97 ..      71     106 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 8.3e-05
                EE--SSSSHHHHHHHGGGGBS--E CS
       AAA_5  4 LvGppGtgKselaerlaaalnrev 27
                +vGppGtgK++l+++l +++++++
  CCD25469.1 74 VVGPPGTGKTTLIKSLIRRMTKST 97
                79**************99995443 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   3.4e-05     0.025      13      37 ..      71      95 ..      68     131 .. 0.81
   2 ?   -2.5   0.5       9.3   6.9e+03      70      80 ..     705     731 ..     666     786 .. 0.47

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.4e-05
                EEEEEESTTSSHHHHHHHHTTSS-- CS
                xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllagllkp 37
                +v +vG+ G+GK+tL+k l++ +++
  CCD25469.1 71 IVSVVGPPGTGKTTLIKSLIRRMTK 95
                5889**************9998776 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 9.3
                 S-TTSBHHHH................H CS
                 xxxxxxxxxx................x RF
    ABC_tran  70 lfpeltvren................e 80 
                  ++ +t +e+                e
  CCD25469.1 705 KKDLTTEQERelnaskkeklrlqfemE 731
                 222222222233333333333333330 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   5.5e-05     0.041       3      24 ..      74      96 ..      72     160 .. 0.73
   2 ?   -0.0   0.3       1.6   1.2e+03      55      92 ..     526     566 ..     478     569 .. 0.69
   3 ?   -1.2   0.3       3.7   2.8e+03      28      86 ..     726     798 ..     678     808 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.5e-05
      AAA_18  3 ltGtpGvGKttlakeLskrl.gf 24
                + G+pG+GKttl k L +r+ ++
  CCD25469.1 74 VVGPPGTGKTTLIKSLIRRMtKS 96
                89**************7775344 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 1.6
      AAA_18  55 dkldklldaleenss...aleegknlvidghlaeleseaak 92 
                 +  +++ ++l++ ++   +++ gk +++d + a+ +  +++
  CCD25469.1 526 NWEASAASKLNGTINrrrKWDIGKLIYMDNISAKDCIRRWR 566
                 2223445555555557899***********99998888775 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.7
      AAA_18  28 lrdvakenglllevdpealdeskrldedkldklldaleenss................aleegknlvidghlael 86 
                 l++   e++   e+dp+  +e++   e + +k+ ++le n++                + ++   +v+d ++ e+
  CCD25469.1 726 LQFEMEEGENFKEDDPD--NEYDTWYELQKAKIAKQLEINNAelqemtpeqrqriegfKAGSYVRIVFDNVPMEF 798
                 33333333333344444..22222222222222222222222444444445555556666666666666666555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   0.00017      0.13       2      28 ..      72      98 ..      71     115 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
                EEEE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellkssgv 28
                v + GppG+GKtTl+k +++ + +s +
  CCD25469.1 72 VSVVGPPGTGKTTLIKSLIRRMTKSTL 98
                5688*************9999877754 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0025       1.8     102     130 ..      72     101 ..      68     114 .. 0.77
   2 ?   -0.7   0.0       1.6   1.2e+03      13      73 ..     131     191 ..     111     200 .. 0.76
   3 ?   -1.8   0.0       3.4   2.6e+03     116     147 ..     425     457 ..     384     460 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0025
                  EEEECSTTSSHHHHHHHHCTT-----.S-- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpelelkt.gev 130
                  + +vG+ G GK+tLi++l+ +++ +t +e+
   CCD25469.1  72 VSVVGPPGTGKTTLIKSLIRRMTKSTlNEI 101
                  6689**************997755441555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.6
                  EES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEE.EEE-GGG--HHHHHHHHHHHHH CS
  RsgA_GTPase  13 vaNvdqllivvslkepelslnlldrfLvlaeekgiepvi.vlnKiDlleeeeeleelkeele 73 
                  va v  l++++   +  +++++++ fL la+++g++ v+ v + +Dl +++++l+++k++l+
   CCD25469.1 131 VAKVSDLVLLMIDGNFGFEMETME-FLNLAQHHGMPRVLgVATHLDLFKSQSTLRATKKRLK 191
                  888888888887777788887775.99999999997777367899*****999998888876 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3.4
                  HHHHCT.T-----S--------------SEEEE CS
  RsgA_GTPase 116 inallp.elelktgevseklgrGkhTTtavell 147
                  + +++   +e +t++  +++++G+h  ++ +l+
   CCD25469.1 425 LHEVADdAQEDETEDRDASQNQGRHSLRNPKLY 457
                  333333246778888999999****99988876 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00056      0.42       1      23 [.      74      96 ..      74     102 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00056
  ATP_bind_1  1 vvGpaGsGKttfvgalseilelr 23
                vvGp+G GKtt++++l+  ++++
  CCD25469.1 74 VVGPPGTGKTTLIKSLIRRMTKS 96
                89**************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2206  (0.123041); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 1.06u 0.43s 00:00:01.49 Elapsed: 00:00:00.56
# Mc/sec: 6409.32
//
Query:       CCD25470.1  [L=335]
Description: hypothetical protein NDAI_0F01510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-56  189.5  16.7      7e-56  189.3  16.7    1.0  1  Bac_rhodopsin  Bacteriorhodopsin-like protein
  ------ inclusion threshold ------
        8.9    5.9  14.7        1.4    8.6   1.9    2.5  2  DUF4131        Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> Bac_rhodopsin  Bacteriorhodopsin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.3  16.7   7.8e-60     7e-56       1     221 [.      38     280 ..      38     282 .. 0.97

  Alignments for each domain:
  == domain 1  score: 189.3 bits;  conditional E-value: 7.8e-60
                    HHHHHHHHHHHHHHHHHHHHHTTTSSTCCHHHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEETTEE..............EEEETHHHHHHHHHHH CS
  Bac_rhodopsin   1 wtvfsvfallalvatllfvvtsrrvkdgekrkllvipllitaiaavaYltmalglGltgveaefeh..............rqvfyarYidWllttP 82 
                    w+ fs+f+ + +v+++lf++ +++ ++ ++r+ + ++lli+ + ++aY+t+a++lG+tg++aef+h              rq+fy +Y+  +l++P
     CCD25470.1  38 WAAFSIFGCFLVVYLALFFIAEMK-GSTLSRYTVGAALLISLFEFFAYFTYASNLGWTGIQAEFNHihvdpsitgetpgvRQIFYSKYVSLFLSWP 132
                    99**********************.9********************************************************************** PP

                    HHHHHHHHHTTSS...............HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSTHHHHHHHHH CS
  Bac_rhodopsin  83 llvlvlaelagad...............rrtllvlvladvvmivgglvgaliestyrwvyftisvaallvvlylllgelaraakslsserrslfnt 163
                    + +l+l+el++ +               +++ll++++a++ ++v++l+gali sty+w+y++++++a+l+v     ++++r++  l+ +   +   
     CCD25470.1 133 A-LLFLIELTNISiteenkvddlsamelIHSLLLQMIATESWVVALLIGALIRSTYKWGYWVFGAVAMLIVQF---VQFKRQFITLRIR--GVTAG 222
                    *.******************************************************************99875...456*******998..99*** PP

                    HHHHHHHHHHHHHHHHHHSTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHCCHTTCHH CS
  Bac_rhodopsin 164 LrnlvvvlwilYpvawllgeeGngiqpdveavvygilDlvtkvgfglillaaatslgs 221
                    + +l++ +++lY+++w+++e+Gn+iqpd+eav++gilD+ +++++++ ll +a   g+
     CCD25470.1 223 MEMLTMCIVWLYFICWGVSEGGNKIQPDSEAVFFGILDVCIFAILPAYLLFIAKRYGK 280
                    ***************************************************9987665 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   5.2     0.012   1.1e+02       4      50 ..      36      88 ..      33      98 .. 0.63
   2 ?    8.6   1.9   0.00015       1.4       4      61 ..     188     249 ..     185     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.012
     DUF4131  4 plalvllalllllllllllllrr......rprrrvllllllllllallgfalr 50
                +l++ + +++++l ++l+l++          r++v ++ll+ l+ ++++f++ 
  CCD25470.1 36 WLWAAFSIFGCFLVVYLALFFIAemkgstLSRYTVGAALLISLFEFFAYFTYA 88
                34444444555555555444445679997777777777777777777777654 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00015
     DUF4131   4 plalvllalllllllllllllrr....rprrrvllllllllllallgfalrapqpnandlsq 61 
                  + +++++++++l++  + ++r+    r r  ++++ +l +++++l+f ++  + + n++++
  CCD25470.1 188 KWGYWVFGAVAMLIVQFVQFKRQfitlRIRGVTAGMEMLTMCIVWLYFICWGVSEGGNKIQP 249
                 57789999999999998888877***************************999888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1195  (0.0666518); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.38s 00:00:00.87 Elapsed: 00:00:00.49
# Mc/sec: 2058.27
//
Query:       CCD25471.1  [L=1267]
Description: hypothetical protein NDAI_0F01520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-30  103.9   1.9    5.4e-30  103.9   1.9    2.2  2  WAC_Acf1_DNA_bd  ATP-utilising chromatin assembly and remodel
    1.4e-13   51.1   2.1    2.2e-13   50.5   0.1    2.5  2  WSD              Williams-Beuren syndrome DDT (WSD), D-TOX E 
    1.8e-10   41.0   0.2    2.3e-08   34.2   0.0    2.9  3  DDT              DDT domain


Domain annotation for each model (and alignments):
>> WAC_Acf1_DNA_bd  ATP-utilising chromatin assembly and remodelling N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   1.9   9.1e-34   5.4e-30       2     101 .]      26     125 ..      25     125 .. 0.99
   2 ?   -3.4   0.0       2.5   1.5e+04      10      36 ..     599     625 ..     596     627 .. 0.80

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 9.1e-34
  WAC_Acf1_DNA_bd   2 vfvikqTgEvftdyeeylerldlykqkvftceitgksnltyfeAlesEkeaskeleekfpealkkpvlelvqfstrsrlddLvedvyeelkerf 95 
                      v++i+qTgE+ft+y +y++r ++y++++ftce+tg+snltyfeA++sEk + ++l+ekfp+ ++++v +++++s+ +++ddL+e ++ ++k++f
       CCD25471.1  26 VWYIEQTGEWFTNYINYAKRQEFYSKPIFTCETTGTSNLTYFEAKRSEKLQLDNLHEKFPKFMERQVAAYIHLSEFKSIDDLIEVILLKCKHEF 119
                      9********************************************************************************************* PP

  WAC_Acf1_DNA_bd  96 fvgEeV 101
                      f gE++
       CCD25471.1 120 FTGEHI 125
                      ****86 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.5
  WAC_Acf1_DNA_bd  10 Evftdyeeylerldlykqkvftceitg 36 
                      + f+  +++l+++  y++  +  ++++
       CCD25471.1 599 DAFKAIDDNLNKVLNYRNINWAERLQK 625
                      578889999999999999999877765 PP

>> WSD  Williams-Beuren syndrome DDT (WSD), D-TOX E motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.3         3   1.8e+04      63      89 ..     571     597 ..     568     598 .. 0.73
   2 !   50.5   0.1   3.7e-17   2.2e-13       4      95 ..     897    1059 ..     895    1062 .. 0.93

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 3
         WSD  63 gewavysskeqleeLiesLnprgvREs 89 
                 g+w+++  +e  +   e L+++  RE+
  CCD25471.1 571 GKWRCLVAPEWHDGNEENLDEKKRREK 597
                 667777777777777788999999997 PP

  == domain 2  score: 50.5 bits;  conditional E-value: 3.7e-17
         WSD    4 kpLGkDRfyrrYwlfd..............kgtgrlfveepsegdievllekre........................................... 43  
                   pLG+DR+ + Y++f+              +++gr+++++ps++   +ll+ ++                                           
  CCD25471.1  897 LPLGSDRYGNSYYWFEfngnqygksseqlgYNSGRIWIQGPSAETARLLLDISDndiarwskiarevdkveatkivfnlyegdnhhyyqvdndieve 993 
                  79*****************************************888888888779****************************************** PP

         WSD   44 .............ekesekrr.eeeeeeevleegewavysskeqleeLiesLnprgvREsaLkeal 95  
                                ++ +++  +e+ +  +l++ +w+++++ e++++L+++L++ g+REs+L +++
  CCD25471.1  994 llndknictrsdlLTPIQRKVlDESPGMLLLSRDDWYCIDTLEDVRALVDWLDQWGHRESKLLKNI 1059
                  ***********9855556666778888999********************************9987 PP

>> DDT  DDT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.7     1e+04      20      35 ..      96     112 ..      95     123 .. 0.80
   2 !   34.2   0.0   3.9e-12   2.3e-08       3      38 ..     429     464 ..     427     474 .. 0.89
   3 ?    3.7   0.0     0.013        80      43      57 ..     552     566 ..     534     569 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.7
         DDT  20 LgLspft.lddlesALl 35 
                 ++Ls f+ +ddl++++l
  CCD25471.1  96 IHLSEFKsIDDLIEVIL 112
                 68888877999999987 PP

  == domain 2  score: 34.2 bits;  conditional E-value: 3.9e-12
         DDT   3 fgdlLmvweFLhvFgelLgLspftlddlesALlsqd 38 
                 +g+lL++++FL +Fg++L+Lspf+lddl+ ++ +++
  CCD25471.1 429 MGKLLQTYQFLGNFGPILKLSPFSLDDLVTSIKCTN 464
                 699*****************************9987 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.013
         DDT  43 seLlaeihiaLLkal 57 
                 ++Ll+e++i LL++ 
  CCD25471.1 552 TNLLVEVFIRLLCMF 566
                 68***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1122  (0.0625802); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.29s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 8578.01
//
Query:       CCD25472.1  [L=341]
Description: hypothetical protein NDAI_0F01530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-43  147.6   1.0    3.8e-43  147.0   1.0    1.2  1  Ubiq_cyt_C_chap  Ubiquinol-cytochrome C chaperone


Domain annotation for each model (and alignments):
>> Ubiq_cyt_C_chap  Ubiquinol-cytochrome C chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   1.0   2.1e-47   3.8e-43       1     141 []     151     294 ..     151     294 .. 0.98

  Alignments for each domain:
  == domain 1  score: 147.0 bits;  conditional E-value: 2.1e-47
  Ubiq_cyt_C_chap   1 eelgvpdtfagrfqllvlhtwlllrRlkaeg.pegreieqelldkffedvdeklreegvgdlsv..pkrmkklaeafygrllaydealgsddaa 91 
                      e+l++p tf+++fq+++lh w+l++R++a++ + gr+++q+l+d++f d++ +l ee + ++++   +++k+++++++g+++ayde++  dda 
       CCD25472.1 151 EDLNLPRTFSQWFQITILHEWMLFVRMRAMPfKYGRNYQQKLVDRTFADIELRLFEEMKVNSGRivDQYLKDFNSQLRGAVFAYDEGFFTDDAT 244
                      689********************************************************9**999***************************** PP

  Ubiq_cyt_C_chap  92 Laaalwrnvykaslevdleklaglvgyvraqlatlsalageallvgipvf 141
                      La+alwrn++ ++++ d+ +l+++v+yvr+ql++l +l+++++++g+++f
       CCD25472.1 245 LATALWRNLFAGRKDIDMVHLEAMVRYVRSQLYVLNQLSDREFATGKFKF 294
                      **********************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 2367.12
//
Query:       CCD25473.1  [L=541]
Description: hypothetical protein NDAI_0F01540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.3e-87  291.0   0.3    8.8e-87  290.6   0.3    1.2  1  HK          Hydroxyethylthiazole kinase family
      1e-58  197.6   0.0    1.6e-58  197.0   0.0    1.3  1  TMP-TENI    Thiamine monophosphate synthase
  ------ inclusion threshold ------
      0.045   12.9   0.0      0.097   11.8   0.0    1.5  1  MRF_C1      Myelin gene regulatory factor -C-terminal domain 
      0.074   12.0   0.1       0.15   11.0   0.1    1.5  1  IMPDH       IMP dehydrogenase / GMP reductase domain
       0.11   13.0   0.1       0.59   10.6   0.0    2.1  2  Knl1_RWD_C  Knl1 RWD C-terminal domain


Domain annotation for each model (and alignments):
>> HK  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.6   0.3   2.4e-90   8.8e-87       1     244 [.     256     525 ..     256     527 .. 0.95

  Alignments for each domain:
  == domain 1  score: 290.6 bits;  conditional E-value: 2.4e-90
                 HHHHHHH--EEEEE--TTTHHHHHHHHHHHT-EEEE--STTTHHHHHHTSSE.EEEE-TT--HHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHH CS
          HK   1 lkklreksPlvhhiTNkVaqnfsANvllAlgaSPimseaeeEvselakiana.LllNiGtleekaiealkaAvksakevnrPvvlDPVgvgAtelRrel 98 
                 l+++++++Plv+h+TNkV+qnf+ANv+lAlg+SPimse  +Ev+ela+++na LllN+G++++  +ealk+Av++++e +rP+++DPVg++At++R +l
  CCD25473.1 256 LSQVQKNHPLVQHMTNKVHQNFGANVTLALGSSPIMSEVPSEVDELASVPNAaLLLNTGSVAP--VEALKEAVRAYNERKRPIIFDPVGYSATQTRLTL 352
                 789************************************************99**********..********************************** PP

                 HHHHHHHS--SEEEEEHHHHHHHHTSS.CCSCSSSSSS-SHH...HHHHHHHHHHHHTSEEEEESSSEEEEESSEEEEEE-S-G............... CS
          HK  99 alellkevklavikGNasEilslagle.lkvkGvDskeaata...avaavqkvAqklrvvvvvtGevDvvsdgkkvyklknGte............... 178
                 +++ll+++++ +ikGN +Eilsla+l+ +k++GvD+ + +++   + +a++ vA+ +++++v+tGe D+++dg+   + + G+                
  CCD25473.1 353 NNTLLQYGQYTCIKGNSGEILSLAKLNqGKMRGVDAGDDKVDkalLARATRLVAFTYKTIAVCTGEYDFIADGTMSSSYRLGHGvgelsandipcvmie 451
                 **************************999**********9997534899*************************9777777777779************ PP

                 .....GGGGSTTHHHHHHHHHHHHHTTB..SSHHHHH.HHHHHHHHHHH.HHHHHHHTTHHHHHHHHHHHHH-- CS
          HK 179 .....llgkitasGCllgsvvaaflavk..kdkllaa.veavllykvAgkeaaarsegsgsFqvelldalsqlt 244
                      l+ kitasGC+lg+++aa ++    ++  ++a v+avllyk+Agk a+ +++gsgsF+v+l+dal ql+
  CCD25473.1 452 dgpipLMEKITASGCSLGTAIAALVGGLspNGIAFNAvVSAVLLYKSAGKLASLNCRGSGSFHVHLIDALDQLF 525
                 *************************9876677788888*********************************997 PP

>> TMP-TENI  Thiamine monophosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.0   0.0   4.4e-62   1.6e-58       1     181 []      12     212 ..      12     212 .. 0.96

  Alignments for each domain:
  == domain 1  score: 197.0 bits;  conditional E-value: 4.4e-62
    TMP-TENI   1 lylvtdskld.kneellevveealkggvtlvqlRekeldarellelaeklaalcrkygvpliindrvdlalavgadgvHlgqddlpvaearellgpdli 98 
                 lylvtds++  ++++l ++ve+ lk+gvtlvqlRek+ d++ ++e+a ++++lc++y+vpliindr+d+ala++adgvH+gq+d+p+  +r+llgpd+i
  CCD25473.1  12 LYLVTDSTMLpEGTTLYSQVEAGLKNGVTLVQLREKDTDTKIFIEEAIAVQKLCKAYDVPLIINDRIDVALAIDADGVHVGQSDMPIPMVRQLLGPDKI 110
                 8********9999************************************************************************************** PP

    TMP-TENI  99 iGlSvhsleeaeeaealga...dYigvGpifpTdtKkda..eplgleglkelaeale......iPvvaiGGitlenvaevl........eagadgvavv 178
                 +G+Sv + +e+e++++ g    dYig+G +fpT+tKk++  +p+g +g+ ++ +ale      + +vaiGG++++n+++vl        +  +dg++vv
  CCD25473.1 111 VGWSVGKTSEVETLAQWGTdmvDYIGIGMVFPTETKKNPrkSPMGPTGVIDILNALEttqatwCRTVAIGGLHPNNIPRVLyqcvshngKRALDGISVV 209
                 **********998885554444****************9999***************9999999**********************999999******* PP

    TMP-TENI 179 sai 181
                 s+i
  CCD25473.1 210 SDI 212
                 987 PP

>> MRF_C1  Myelin gene regulatory factor -C-terminal domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.7e-05     0.097       6      21 ..      51      66 ..      49      69 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.7e-05
      MRF_C1  6 dRiFmEnVgAVkeLck 21
                 +iF E   AV++Lck
  CCD25473.1 51 TKIFIEEAIAVQKLCK 66
                58*************9 PP

>> IMPDH  IMP dehydrogenase / GMP reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   4.2e-05      0.15      84     175 ..      44     138 ..      24     182 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.2e-05
                 TSXBXTTSXB-EEEEE-SST.THHHHHHHHHHTT-SEEEEE-STSSSHHHHHH.HHHHHHHTTTSEEEEEEE-SHHHHHHHHHTT-SEEE.E-SS CS
                 xxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
       IMPDH  84 naakdekgrllvgaavgvke.dalervkalveagvdvlvvdsahghsekvlea.vkeikkkveeveviaGnvataegakaLieagadavk.vGiG 175
                    kd++ ++ +  a+ v++  +   v  +++ ++dv +   a+g   ++ ++ +  +++ + + ++++ +v  ++ +++L++ g d+v  +GiG
  CCD25473.1  44 LREKDTDTKIFIEEAIAVQKlCKAYDVPLIINDRIDVALAIDADGVHVGQSDMpIPMVRQLLGPDKIVGWSVGKTSEVETLAQWGTDMVDyIGIG 138
                 5678999999999999999844567899********96655567777777666599999999999999*********************648888 PP

>> Knl1_RWD_C  Knl1 RWD C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.2   4.2e+03       3      14 ..     119     130 ..     118     140 .. 0.79
   2 ?   10.6   0.0   0.00017      0.59      48      95 ..     232     276 ..     215     278 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.2
  Knl1_RWD_C   3 eeieflerWGgk 14 
                  e+e l +WG+ 
  CCD25473.1 119 SEVETLAQWGTD 130
                 599*******84 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00017
  Knl1_RWD_C  48 asypsvplpftvqnkiGnigedeiaavlssvplgknylkkvvkkiyqd 95 
                 ++++++pl f+ q+   ni++++i+  ls+v  ++ +++++ +k++q+
  CCD25473.1 232 SKFEYIPLDFSHQE---NITSKDIKDTLSQVQKNHPLVQHMTNKVHQN 276
                 67899999999997...56899*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3980.10
//
Query:       CCD25474.1  [L=252]
Description: hypothetical protein NDAI_0F01550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-17   63.9   0.8    1.2e-17   63.9   0.8    1.7  2  LRR_9      Leucine-rich repeat
     0.0003   21.1   2.1     0.0003   21.1   2.1    3.1  4  LRR_4      Leucine Rich repeats (2 copies)
  ------ inclusion threshold ------
      0.051   12.9   0.6        9.3    5.6   0.0    2.5  3  FPV060     Viral CC-type chemokine
      0.096   12.5  15.8      0.062   13.1   6.3    3.3  3  LRR_8      Leucine rich repeat
       0.65   10.5   3.8         16    6.0   0.2    2.4  2  CALM_bind  Calcium-dependent calmodulin binding


Domain annotation for each model (and alignments):
>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.8   3.4e-21   1.2e-17      46     163 ..      56     173 ..      32     184 .. 0.88
   2 ?   -1.3   0.1      0.38   1.4e+03      74     119 ..     196     242 ..     193     249 .. 0.52

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 3.4e-21
       LRR_9  46 tidlsdndirkld.gfPllkrlktlllnnnrivriaegleevlP.nleelvltnnelqeladldPlasl.kklellsllknpvtnkkeyrlyviyklkq 141
                  +dl++nd+ ++  ++  +k l+tlll+ nri++i   l   lP nle+lvl+nn + el +ld l +  k+l++l+l  np+++ + yr+yv+  l++
  CCD25474.1  56 VLDLTNNDLFNIPwNVKNFKWLHTLLLSRNRIINIDGSL---LPcNLENLVLANNGISELQELDGLSKApKSLKNLTLKGNPICHLNGYREYVLKLLPN 151
                 6799999998885478889999*************9876...5538********************987368*************************** PP

       LRR_9 142 lrlldfrkvklkereeaeklfk 163
                 l  ldf +v  +er+e  k+ k
  CCD25474.1 152 LMTLDFTRVTPEERKEILKINK 173
                 **************99887755 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.38
       LRR_9  74 nrivriaegleevlPnleelvltnnelqeladl.dPlaslkklells 119
                 nri + + +  +   ++ +lv+++ + ++  +l + la+  +l+ ++
  CCD25474.1 196 NRISKNGRQNRDKSIEMMTLVVSKMTDEKKKELkKQLAEATSLDEIA 242
                 77777776655555555566654433333333312456666655554 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.6   9.4e+03      19      28 ..      40      50 ..      31      51 .. 0.51
   2 !    9.7   5.6   0.00034       1.2       5      41 ..      56      92 ..      55      95 .. 0.85
   3 !   21.1   2.1   8.4e-08    0.0003       1      38 [.      97     137 ..      97     143 .. 0.78
   4 ?   -3.3   0.1       4.1   1.5e+04      22      29 ..     149     156 ..     145     159 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.6
                HHH-TT.--EE CS
       LRR_4 19 leklpn.LkeL 28
                 e++p+ Lk+L
  CCD25474.1 40 SESMPSsLKQL 50
                33466667766 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00034
                EEE--SS---E-S-.HHH-TT--EEE-..-S-----GGG CS
       LRR_4  5 vLdLsnNqltdipl.leklpnLkeLdL.sgNnlitdlde 41
                vLdL nN l  ip+  ++++ L++L L s+N +i ++d+
  CCD25474.1 56 VLDLTNNDLFNIPWnVKNFKWLHTL-LlSRN-RIINIDG 92
                7*************6556*******.64888.8889986 PP

  == domain 3  score: 21.1 bits;  conditional E-value: 8.4e-08
                 SS--EEE--SS---E-S-HH...H.-TT--EEE-.-S----- CS
       LRR_4   1 pnLevLdLsnNqltdiplle...k.lpnLkeLdLsgNnlitd 38 
                 +nLe+L L+nN +++++ l    k  ++Lk L+L gN +i  
  CCD25474.1  97 CNLENLVLANNGISELQELDglsKaPKSLKNLTLKGN-PICH 137
                 69**********9999996633364666******888.6655 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 4.1
                 -TT--EEE CS
       LRR_4  22 lpnLkeLd 29 
                 lpnL +Ld
  CCD25474.1 149 LPNLMTLD 156
                 66665554 PP

>> FPV060  Viral CC-type chemokine
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0026       9.3      39      85 ..      20      66 ..      13      73 .. 0.89
   2 ?    5.2   0.1    0.0033        12      42      68 ..      88     114 ..      83     145 .. 0.75
   3 ?   -3.4   0.0       1.4   5.2e+03      72      90 ..     183     201 ..     179     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0026
      FPV060 39 daaidrdlcvllcnlqylassnegigeilqcclssnytsktredlrn 85
                d   d d cv+l +lq  + s+     + q   s+n    t +dl n
  CCD25474.1 20 DGRYDTDKCVILRDLQLETDSESMPSSLKQLSPSTNVLDLTNNDLFN 66
                66789***********99999999999999999****9999999987 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0033
      FPV060  42 idrdlcvllcnlqylassnegigeilq 68 
                 i+ d  +l cnl+ l  +n+gi e+ +
  CCD25474.1  88 INIDGSLLPCNLENLVLANNGISELQE 114
                 677888999**************9864 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.4
      FPV060  72 ssnytsktredlrnciakc 90 
                 ++  t+k +e l n i+k 
  CCD25474.1 183 ATATTTKHKERLTNRISKN 201
                 6677899999999999885 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   8.1   0.00019      0.68       3      61 .]      54     109 ..      52     109 .. 0.92
   2 ?   13.1   6.3   1.7e-05     0.062       3      61 .]      77     135 ..      75     135 .. 0.88
   3 ?    2.8   0.5     0.028     1e+02       2      31 ..     124     156 ..     123     159 .. 0.45

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00019
                 -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                  ++LdL+nN l ++++ + + ++ L +L Ls+N++  ++ g++  + +L+ L L +N +
  CCD25474.1  54 TNVLDLTNNDLFNIPWNVKN-FKWLHTLLLSRNRIINID-GSLLPC-NLENLVLANNGI 109
                 578*************9866.9****************6.999999.**********86 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.7e-05
                 -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT-....-S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgL....psLrsLdLsgNrL 61 
                 L++L Ls+Nr+ ++d +      nL+ L L nN ++ l  + ++gL    +sL+ L+L gN++
  CCD25474.1  77 LHTLLLSRNRIINIDGSLLP--CNLENLVLANNGISEL--QELDGLskapKSLKNLTLKGNPI 135
                 89******************..8**********99999..588888333358********987 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.028
                 T-SEEE-TTS--SEE...-TTSSTT-TT--EEE CS
       LRR_8   2 nLtsLdLsnNrltsl...ddeaFkglsnLkvLd 31 
                 +L++L L  N + +l   +  + k l+nL++Ld
  CCD25474.1 124 SLKNLTLKGNPICHLngyREYVLKLLPNLMTLD 156
                 455555555544333111334444455555555 PP

>> CALM_bind  Calcium-dependent calmodulin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2    0.0045        16      20      59 ..     160     203 ..     149     215 .. 0.77
   2 ?    5.1   0.4    0.0086        31      20      40 ..     220     240 ..     219     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0045
   CALM_bind  20 mtaekreemqqyRqkAvq....leaklrqarkarstsrvqeiea 59 
                 +t+e+r+e+ + + +A +    l +  + ++k+r+t+r+ +   
  CCD25474.1 160 VTPEERKEILKINKEAKKiggdLATATTTKHKERLTNRISKNGR 203
                 7999************9966667777777777777777766543 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0086
   CALM_bind  20 mtaekreemqqyRqkAvqlea 40 
                 mt+ek++e++++ ++A++l +
  CCD25474.1 220 MTDEKKKELKKQLAEATSLDE 240
                 9***********999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1424  (0.0794244); expected 358.6 (0.02)
Passed bias filter:                      679  (0.0378716); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1778.46
//
Query:       CCD25475.1  [L=338]
Description: hypothetical protein NDAI_0F01560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-17   63.6   0.0    2.4e-17   63.2   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
    9.3e-14   51.1   0.0    1.2e-13   50.7   0.0    1.1  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    4.7e-09   36.1   0.0    6.6e-09   35.6   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
    8.4e-09   35.6   0.0    1.2e-08   35.1   0.0    1.3  1  NAD_binding_10   NAD(P)H-binding
      2e-08   33.7   0.1    0.00069   18.9   0.2    2.2  2  NAD_binding_4    Male sterility protein
    0.00019   20.7   0.1    0.00035   19.8   0.1    1.4  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
    0.00023   20.7   0.0     0.0027   17.2   0.0    2.6  3  adh_short        short chain dehydrogenase
    0.00041   20.3   0.0    0.00069   19.6   0.0    1.5  1  KR               KR domain
    0.00047   19.8   0.1       0.32   10.5   0.0    2.3  2  NmrA             NmrA-like family
  ------ inclusion threshold ------
      0.068   12.7   0.0       0.15   11.6   0.0    1.6  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase


Domain annotation for each model (and alignments):
>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   1.3e-20   2.4e-17       1     230 [.       9     253 ..       9     275 .. 0.80

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 1.3e-20
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC........EEEE--TT-HHHHHHHHHHH..T-SEEEE--S---HHHHHHSHHHHHH CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl........elveldltdrsalerlfkee..qpdavihlAavggvaassedpadfie 89 
                 ++V GatGfi  +++++ll++gy+vig +r +++  + ++  l          +  ++ +++a++++fk++  ++ +v+h+A    ++ s ++ ++++ 
  CCD25475.1   9 VFVSGATGFIALHIINNLLQQGYKVIGSARSQEKVDHLLE--LfnnnpslsLEIVPNIDNPEAFDDVFKKYgnEIKVVLHAAS-PIPRPSTDYEKEYLI 104
                 689****************************666665443..35689998533445999***********9767888888855.556666677778888 PP

                 HHTHHHHHHHHHHHHH...TCTEEEEEEEGGGGTSCSSSSBSTCSTTS--.....--SSHHHHHHHHHHHHHHHHHHHHT....-EEEEEEESEEESTT CS
   Epimerase  90 knlqgtlnlleaarka...gvkrllflsSsevYGkdaeqpkeettltgpl.....kpnspYaaaKlageklveayaaqyg....lnaiilrlfnlyGpr 176
                   ++g+  +l+a++k+    v+r++  sS++   +++++  ee+ ++  +      + ++Ya +K+ +e+ ++++ ++++    +  +++++    Gp 
  CCD25475.1 105 PAVEGVKSILNAVKKYaanSVERVILTSSAAAAQNSTDVVSEESWNDATWkgcqtDSWNAYAGSKTFAERAAWEFMEENKnvikFTLTTVNPVYTLGPQ 203
                 9*************88555677*********9999999545555544444555568899********************77877888999999999*** PP

                 S-TTSTTSHHHHHHHHHHTTSSSEEEETTST-EEEEEEHHHHHHHHHHHHHHHT CS
   Epimerase 177 ngegevsrvipalirkilegkqevtllgdgtalRdflyveDvaeaillvlehvd 230
                  + ++     +a+i++i +   e  +    +    f++v+Dva+a++l+ ++ d
  CCD25475.1 204 AFSDKKFASTSAYIEQIISST-EDNITP--KIAFWFVDVRDVAKAHILAFQN-D 253
                 888887777888999999877.333322..344559***************9.3 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   6.7e-17   1.2e-13       2     231 ..      11     252 ..      10     281 .. 0.78

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 6.7e-17
   3Beta_HSD   2 vtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk.....viegDvtdkdkleeal....egvdvvihlaslvdvagkltedeimkv 91 
                 v G++GF+  +++++L++ +     +v+  + s+e+ ++l ++ +++      i   + + +  +++     ++++vv+h as ++  ++++e+e+   
  CCD25475.1  11 VSGATGFIALHIINNLLQQGY----KVIGSARSQEKVDHLLELFNNNpslslEIVPNIDNPEAFDDVFkkygNEIKVVLHAASPIPRPSTDYEKEYLIP 105
                 88*****************95....66666666666666555544444455656677878777666652223789************************ PP

   3Beta_HSD  92 nvkGTrnvleacvk...agvrvlvYtSsaevvgpnslgeeilngdEeleyesl......hqdaypesKalaEklvlkaNgrtlknggrlyTcaLRpagi 181
                  v+G +++l+a +k   ++v++++ tSsa ++ +   + +++ ++E+++  +         +ay+ sK  aE++  +  + + kn  ++    + p++ 
  CCD25475.1 106 AVEGVKSILNAVKKyaaNSVERVILTSSAAAAQN---STDVV-SEESWNDATWkgcqtdSWNAYAGSKTFAERAAWEFME-ENKNVIKFTLTTVNPVYT 199
                 ***********98744479************999...66666.56666543322222236689**********9987776.55677788888899**** PP

   3Beta_HSD 182 yGegdkllvpllkqlaklglalfkigde...evlsdrvYvgNvawahilAara 231
                  G++    ++++ ++a  ++++ ++ d+   ++ + +v v  va+ahilA ++
  CCD25475.1 200 LGPQAFSDKKFASTSAYIEQIISSTEDNitpKIAFWFVDVRDVAKAHILAFQN 252
                 *****9999999999999977777765422266778899***********886 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   3.7e-12   6.6e-09       2     268 ..      11     282 ..      10     318 .. 0.76

  Alignments for each domain:
  == domain 1  score: 35.6 bits;  conditional E-value: 3.7e-12
                    EETTTSHHHHHHHHHHHHCT-CCEEEEEEESS-TTHHHHHCTTT...TTGCCEEEEE.--TT-HHHHHHHHHHH..T-SEEEE--S---HHHHTTS CS
  GDP_Man_Dehyd   2 iTGiaGfiGsylaelLlekgyevhgivrrsssfntgriehlakdpkeeleenlklhk.gDltDssslerllaev..qpdevynLAAqshVdvsfek 94 
                    + G +Gfi  ++++ Ll++gy+v+g  r ++     +++hl +    +++++l+l    ++ + ++ +++++++  +++ v++ AA    + s + 
     CCD25475.1  11 VSGATGFIALHIINNLLQQGYKVIGSARSQE-----KVDHLLELF--NNNPSLSLEIvPNIDNPEAFDDVFKKYgnEIKVVLH-AASPIPRPSTDY 98 
                    89**********************9665444.....355555432..3344555543048999**********9767888888.666667778888 PP

                    HHHHHHHHTHHHHHHHHHHHHCT..TTSEEEEEEEGGGG-S-SSSSB-TT........S-----SHHHHHHHHHHHHHHHHHHH.H---EEEEEE- CS
  GDP_Man_Dehyd  95 PeytaevnvlGtlrLLeairalglekkvrfyqaStsEvYGkvqevpqtEt........tpfyPrsPYaaaKlyadwivvnyrea.yglfavngilf 181
                     ++++   v G+  +L+a++++  ++  r++ +S++    + ++v  +E+         +++  + Ya +K +a+  + ++ e+  ++   +  + 
     CCD25475.1  99 EKEYLIPAVEGVKSILNAVKKYAANSVERVILTSSAAAAQNSTDVVSEESwndatwkgCQTDSWNAYAGSKTFAERAAWEFMEEnKNVIKFTLTTV 194
                    88888889**************999999999999999988888888888666666666788899**************999877255667777778 PP

                    EEESTTS-TTSCCCHHHHHHHHHHTTS-C-EECTTTT-EEEE..EEHHHHHHHHHHHHHCSS-.--EEE-TT-EEECHHCHHCCHHCCCH CS
  GDP_Man_Dehyd 182 nhesprrgetfvtrkitravarialgkqevlylGnldakRdw..ghvkDyveamwlmlqqdkp.edyviatgethsvrefvelaflelgk 268
                    n       + f  +k+  + a i++   ++    n+ +k  +    v+D+++a  l++q+d+   + ++   +t+s ++++++a+++ ++
     CCD25475.1 195 NPVYTLGPQAFSDKKFASTSAYIEQIISST--EDNITPKIAFwfVDVRDVAKAHILAFQNDNLvGKRLLLAADTFSYQDVLNIANEDFKE 282
                    866666666899999999888888766443..3777776665115689***********9885377778888999999999999988764 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   6.8e-12   1.2e-08       1     120 [.      13     157 ..      13     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 35.1 bits;  conditional E-value: 6.8e-12
                     TTTSHHHHHHHHHHHHC-T-EEEEEETTHHHCHHHH....CTTTCEE.EE--TT-CCHHHHHHT....T-SEEEES---TCC.....HHHH.... CS
  NAD_binding_10   1 GAtGkvGrllvkellargghevtalvRnpeklaele....aeeglev.vegdvtdvedlaealk....gadaVvsalggggk.....deeg.... 77 
                     GAtG ++ ++++ ll++ g++v   +R++ek+++l     +++ l++ ++ ++ ++e+  +++k     + +V+ a+++  +     +       
      CCD25475.1  13 GATGFIALHIINNLLQQ-GYKVIGSARSQEKVDHLLelfnNNPSLSLeIVPNIDNPEAFDDVFKkygnEIKVVLHAASPIPRpstdyE--Keyli 104
                     9****************.5*************9643343367877765566999*********9663344566666644333445442..24567 PP

                     .....HHHHHHHHHH...CT--EEEEEEETTTTSGCGCH..HHHHHHHCCHHH CS
  NAD_binding_10  78 .....aknivdaake...agvkRfvlvsaigvgdevpge..fgewnkellkay 120
                          +k+i++a+k+   + v+R++l s++ + +++ +    ++wn+ ++k  
      CCD25475.1 105 pavegVKSILNAVKKyaaNSVERVILTSSAAAAQNSTDVvsEESWNDATWKGC 157
                     77777888888887544388*********999876555411345666655544 PP

>> NAD_binding_4  Male sterility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.7e-05     0.048       2      35 ..      12      43 ..      11      55 .. 0.84
   2 !   18.9   0.2   3.9e-07   0.00069      81     196 ..      74     184 ..      70     233 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.7e-05
                   E-TTSHHHHHHHHHHHHHS-.TEEEEEE-SSSHH CS
  NAD_binding_4  2 TGaTGFLGkvLlekLLrttpevkiyllvRaksge 35
                    GaTGF++ +++++LL++    k++  +R++++ 
     CCD25475.1 12 SGATGFIALHIINNLLQQGY--KVIGSARSQEKV 43
                   7***************9987..888888877665 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 3.9e-07
                    HHHHHHH--EEEE--SS-S.ST.TSSE.EHHHHHHHHHHHHHHHTSSS--...-EEEEEEGGGTTS-TTT--SSS-H......HHH--EEEETTTC CS
  NAD_binding_4  81 lqelaeevdviihsaAtvnfde.pyke.llrvNveGtrevlelakklkkl..kvllhvSTayvngeregeveekvyeegekeekldederaklkgl 172
                    +++  +e++v++h a  +   + +y++  l + veG++ +l+  kk +++  + ++  S+a++++++++ v+e+  +       + + +  + +++
     CCD25475.1  74 FKKYGNEIKVVLHAASPIPRPStDYEKeYLIPAVEGVKSILNAVKKYAANsvERVILTSSAAAAQNSTDVVSEESWN-------DATWKGCQTDSW 162
                    7788899*********9965443776548899*************98877668899999999999999999888665.......566666665555 PP

                    CCHHHHHHHHHHHHHHHHHHHH-- CS
  NAD_binding_4 173 pntYeqsKalaEklvrearrrsgl 196
                     n+Y  sK  aE+   e +++ + 
     CCD25475.1 163 -NAYAGSKTFAERAAWEFMEE-NK 184
                    .99**********99999866.44 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   1.9e-07   0.00035       1     133 [.       9     138 ..       9     146 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 1.9e-07
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT....T-SEEEE------HHH CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleel..kvdvvfhaAAlKhVPl 92 
                      v+v+Ga+G i  ++++++l++  k i    ++E+  + +e       ++ +l++e   ++ ++ + e  +++++++  +++vv+haA     P 
       CCD25475.1   9 VFVSGATGFIALHIINNLLQQGYKVIGSARSQEKVDHLLELF----NNNPSLSLE---IVPNIDNPEAFDDVFKKYgnEIKVVLHAASPIPRPS 95 
                      78*******************999887777766655544443....356677666...888999999999999998335789*******99999 PP

                      HHHSHHHHHH..HHHHHHHHHHHHHHHTT-SEEEEEEEGGGSS CS
  Polysacc_synt_2  93 veenpleaik..tNvlgtenvieaaieagvkkvvliStDKAvn 133
                       +++    i     v +  n ++   ++ v++v+l S+  A++
       CCD25475.1  96 TDYEKEYLIPavEGVKSILNAVKKYAANSVERVILTSSAAAAQ 138
                      998765555311345555555666667899*****99977764 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.5e-06    0.0027       2      74 ..       8      80 ..       7     145 .. 0.81
   2 ?   -2.3   0.0       1.4   2.5e+03     146     162 ..     162     178 ..     158     201 .. 0.60
   3 ?   -0.1   0.0       0.3   5.4e+02      33      64 ..     213     245 ..     207     257 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.5e-06
                EEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHTTSEEEEEE-TTTSHHHHHHHHHHHHHH CS
   adh_short  2 vvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkeegakalaiqvDvtdreevealvekavkk 74
                +v+v Ga++ I + i ++l+++G+kv+  +rs+ek+ ++++ ++++ +  l i  ++ + e+ +++++k  ++
  CCD25475.1  8 TVFVSGATGFIALHIINNLLQQGYKVIGSARSQEKVDHLLELFNNNPSLSLEIVPNIDNPEAFDDVFKKYGNE 80
                699*****************************************99666777777888777777777766544 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
                 BHHHHHHHHHHHHHHHH CS
   adh_short 146 vaaYsAsKaavagltrs 162
                 + aY+ sK + +  + +
  CCD25475.1 162 WNAYAGSKTFAERAAWE 178
                 67777777665544433 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.3
                 CHHHHHHHHHHHHHT.TSEEEEEE-TTTSHHHH CS
   adh_short  33 seekleevakelkee.gakalaiqvDvtdreev 64 
                 +++ +e+++++ +++   k+ ++ vDv+d +++
  CCD25475.1 213 TSAYIEQIISSTEDNiTPKIAFWFVDVRDVAKA 245
                 566788999999999999**********98765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.8e-07   0.00069       1     143 [.       7     140 ..       7     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.8e-07
                 SEEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE---------TT CS
          KR   1 gtylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlrdklle 98 
                 gt+++ G++G ++l++++ l+++g +  +  +Rs   +e+ ++l++ ++++   + e+v+  + +++a   +++++    ++ik v+haA      ++ 
  CCD25475.1   7 GTVFVSGATGFIALHIINNLLQQGYKV-IGSARS---QEKVDHLLELFNNNpSLSLEIVP-NIDNPEAFDDVFKKYG---NEIKVVLHAAS-----PIP 92 
                 899*********************874.445666...55666667766666455666666.7889999999998886...89*******95.....778 PP

                 T--HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH-- CS
          KR  99 emtaedleqvlapKvkGawnLhelled...esldffvlfSSiagllgs 143
                 + +++  ++ l p v+G++ + +++++   +s++ ++l+SS+a+   s
  CCD25475.1  93 RPSTDYEKEYLIPAVEGVKSILNAVKKyaaNSVERVILTSSAAAAQNS 140
                 8889999999*********9999999989899**********997655 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00018      0.32       1      44 [.       9      54 ..       9     141 .. 0.71
   2 !    7.3   0.0    0.0017         3     174     222 ..     229     277 ..     199     283 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S-S..HHHHHHHHST CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdtks..elakslkeaG 44
                + v GaTG ++ ++++ ll++g+kv    R +++  +l++ +++++
  CCD25475.1  9 VFVSGATGFIALHIINNLLQQGYKVIGSARSQEKvdHLLELFNNNP 54
                5699*********************998888854113455555555 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0017
                 -TTS-EE.-HHHHHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHHHHHH CS
        NmrA 174 npkavll.daeeDiGafvikilkdprklkgkriklagntlsgneivelfe 222
                  pk+++  ++++D++++ i ++++ ++l gkr+ la +t s+++++++ +
  CCD25475.1 229 TPKIAFWfVDVRDVAKAHILAFQN-DNLVGKRLLLAADTFSYQDVLNIAN 277
                 567777789***********9987.5688****************99876 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.3e-05      0.15       2     133 ..      14     138 ..      13     146 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.3e-05
                   TTTSHHHHHHHHHHHTT-EEEEEESSGGHHHHHHHHHHHTTSE.EEE--TTSHHHHHHHHHHHHHHH.SSEEEEEE-----EGCSS-GGGH-HHHHH CS
  adh_short_C2   2 aasgIGraiAkalaeeGaevvltdlneeakkrveelaeelgae.vlecDVtdeeqvealveevvekf.gklDilvnnagiapklkgpfletsreefd 96 
                   a   I+ +i   l ++G++v+ + +++e+   v+ l e ++++  l + +  + +  +++++v +k+ +++ +++++a   p+   p ++ ++e + 
    CCD25475.1  14 ATGFIALHIINNLLQQGYKVIGSARSQEK---VDHLLELFNNNpSLSLEIVPNIDNPEAFDDVFKKYgNEIKVVLHAASPIPR---PSTDYEKEYLI 104
                   5555999*******************999...7777777776645777777777777778888888856799****9999998...66666666654 PP

                   HHHHHHTHHHHHHHHHHHHHCTSC.CEEEEEEEGGGTS CS
  adh_short_C2  97 raldvnlyslfllakaalplmkeg.gsivnlssvgaer 133
                    a    + ++ ++++a++++++++  +++ +ss +a +
    CCD25475.1 105 PA----VEGVKSILNAVKKYAANSvERVILTSSAAAAQ 138
                   44....56888888888887776657777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       772  (0.0430587); expected 358.6 (0.02)
Passed bias filter:                      578  (0.0322383); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.54u 0.30s 00:00:00.84 Elapsed: 00:00:00.46
# Mc/sec: 2196.38
//
Query:       CCD25476.1  [L=548]
Description: hypothetical protein NDAI_0F01570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-12   47.8   0.0    7.2e-11   42.5   0.0    2.4  2  PseudoU_synth_1  tRNA pseudouridine synthase
  ------ inclusion threshold ------
       0.02   14.7   0.0      0.073   12.9   0.0    1.8  2  DUF2344          Uncharacterized protein conserved in bacteri
       0.16   12.3   0.3       0.65   10.3   0.1    2.1  2  Med15_fungi      Mediator complex subunit 15


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.028   1.7e+02       5      70 ..      88     153 ..      84     187 .. 0.57
   2 !   42.5   0.0   1.2e-14   7.2e-11       3     104 ..     307     409 ..     306     413 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.028
  PseudoU_synth_1   5 lvGthdfgsfckqkqekkntvrtileaaieevsgeekell...vvtvkgsgFldhqVRamvgvlfavgq 70 
                      ++Gt + g + + ++++++ + t+++a ++  +  + +     +  +  s+++d++V+a ++++    +
       CCD25476.1  88 YCGTGYHG-M-QYNPPNPTIEATLFKAFVDAGAISKANSNdlkKNGFMRSARTDKGVHAGGNLI-SLKM 153
                      66666666.3.4555555555555555555322222111133366777899*******988877.3333 PP

  == domain 2  score: 42.5 bits;  conditional E-value: 1.2e-14
  PseudoU_synth_1   3 kelvGthdfgsfckqkqek.kntvrtileaaiee...vsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspedvkellnakkrkkiav 92 
                      ++++G h+f +f+  k+ k ++ +r ++e++++    + + + e++ ++++g++F+ hq+R m+ ++ +v++   +++ ++++  ++k   +++
       CCD25476.1 307 EQYLGAHNFHNFTLGKEFKdPSAIRFMKEIKVSDpfvIGDAKTEWVSIKIHGQSFMLHQIRKMISMATLVTRCGSPVDRINQAYGVQK---LNI 397
                      68**********7777777777788888888886444788888999*************************************99998...799 PP

  PseudoU_synth_1  93 etapavglvlfh 104
                      ++apa gl l+ 
       CCD25476.1 398 PKAPALGLLLEA 409
                      ********8765 PP

>> DUF2344  Uncharacterized protein conserved in bacteria (DUF2344)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.2e-05     0.073      66     135 ..     149     258 ..     141     268 .. 0.75
   2 ?   -0.3   0.0      0.14   8.3e+02      70     100 ..     230     260 ..     209     316 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.2e-05
     DUF2344  66 ielteevdpeevverLnaqlpegikileveeieek.akslmallaaaeYrv.e......................................eleealee 124
                 i l++ ++  e+++++n+qlpeg+++ ++e++++      m + ++ eY + +                                      +l+++++e
  CCD25476.1 149 ISLKMIIEDPEIKSKINEQLPEGVRVWDIERVNKAfDCRKMCSSRWYEYLLpTysligpkpgsilyndieesrielpgvldddmesktfweNLQKEIDE 247
                 4566667899**********************9774445555555555655426677888888888888888887777777777777777777777777 PP

     DUF2344 125 flaaeeilvek 135
                  ++ eei+ +k
  CCD25476.1 248 TFTPEEIEAIK 258
                 77777777766 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.14
     DUF2344  70 eevdpeevverLnaqlpegikileveeieek 100
                 ++++++++ e+L++++ e ++  e+e+i++ 
  CCD25476.1 230 DDMESKTFWENLQKEIDETFTPEEIEAIKSY 260
                 5566677777777766665555555555544 PP

>> Med15_fungi  Mediator complex subunit 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00011      0.65      72     106 ..     276     310 ..     273     312 .. 0.91
   2 ?   -2.8   0.0       1.3   7.6e+03      71      84 ..     440     453 ..     438     468 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00011
  Med15_fungi  72 mrimlkeqleklpqdqftikpeyLeklksqiqkyf 106
                  +++  ++qle+ +++++ i+ e+L+k +s +++y 
   CCD25476.1 276 LKVKKYKQLENAHRRKYRISQEKLTKFRSSMEQYL 310
                  678889*************************9996 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.3
  Med15_fungi  71 qmrimlkeqleklp 84 
                  +m++++ +++++  
   CCD25476.1 440 KMKHIYDKIYKEEV 453
                  67777777766433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3735.45
//
Query:       CCD25477.1  [L=181]
Description: hypothetical protein NDAI_0F01580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-30  103.7   0.1    8.4e-30  103.2   0.1    1.2  1  UPF0113_N  UPF0113 Pre-PUA domain
    2.2e-24   85.5   0.0    5.3e-24   84.3   0.0    1.6  2  UPF0113    UPF0113 PUA domain


Domain annotation for each model (and alignments):
>> UPF0113_N  UPF0113 Pre-PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.1   9.3e-34   8.4e-30       1      82 []       2      83 ..       2      83 .. 0.99

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 9.3e-34
   UPF0113_N  1 RklseeetrivfekLtkyigdnvkelldrkdgtycfrlkkkrVyyvseellklaetikpenlisaGtclGkftktkkFrlsi 82
                R+l+eeet++vfekL+ yig+n+  l+d+k++ ++frl+k+rVyyv+e ++kla +i++ nl+s+G+clGkftkt+kFrl+i
  CCD25477.1  2 RQLTEEETKVVFEKLAGYIGRNITYLVDNKENPHVFRLQKDRVYYVPEHVAKLATSIARPNLMSVGICLGKFTKTGKFRLHI 83
                89*******************************************************************************8 PP

>> UPF0113  UPF0113 PUA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.72   6.5e+03      27      43 ..      17      33 ..       9      36 .. 0.68
   2 !   84.3   0.0   5.9e-28   5.3e-24       1      76 []      96     175 ..      96     175 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.72
     UPF0113 27 tesvkenqvvvVlneng 43
                 + + +n   +V+n+++
  CCD25477.1 17 AGYIGRNITYLVDNKEN 33
                55566677778888765 PP

  == domain 2  score: 84.3 bits;  conditional E-value: 5.9e-28
     UPF0113   1 kvvvkekaeklFLYGrdvlkesilkitesvkenqvvvVlnengeplGiGkirkdt...k.aspgkivvknlaDiGeYlRr 76 
                 k+++k+++e+ FLYG++vlk ++ k++++++e+ +v+++ +n++plG+G+++k+t   + + p++iv+ ++aDiGeYlR+
  CCD25477.1  96 KIWIKPNGEMPFLYGNHVLKAHVGKMSDDIPEHAGVIIFAMNDTPLGFGVSAKSTsesRnLPPTSIVAFRQADIGEYLRD 175
                 89*******************************************************978*******************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1346.85
//
Query:       CCD25478.1  [L=654]
Description: hypothetical protein NDAI_0F01590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.4e-08   33.1   5.2    5.4e-08   33.1   5.2    2.6  2  SRP72         SRP72 RNA-binding domain
    2.3e-06   27.8   3.8    0.00039   20.7   0.2    4.2  5  TPR_12        Tetratricopeptide repeat
    7.9e-05   22.7   8.3    7.9e-05   22.7   8.3    4.6  4  SRP_TPR_like  Putative TPR-like repeat
     0.0024   18.1   8.6        1.8    8.9   0.1    5.0  5  ANAPC3        Anaphase-promoting complex, cyclosome, subunit 
     0.0066   16.6  11.8        0.2   11.9   0.3    6.2  6  TPR_8         Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.091   12.8   1.4         11    6.4   0.0    3.9  4  TPR_7         Tetratricopeptide repeat
       0.12   12.1   3.1       0.73    9.5   0.1    3.0  3  RPN7          26S proteasome subunit RPN7
       0.15   12.3  10.2        1.1    9.6   0.0    4.9  6  TPR_2         Tetratricopeptide repeat
       0.45   10.4   0.1       0.45   10.4   0.1    4.1  5  TPR_1         Tetratricopeptide repeat
       0.51   11.1   3.4         50    4.8   0.0    5.2  7  TPR_6         Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SRP72  SRP72 RNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   5.2     3e-11   5.4e-08       4      58 .]     544     605 ..     541     605 .. 0.77
   2 ?   -1.9   5.4       2.6   4.6e+03       9      31 ..     631     653 ..     612     654 .] 0.61

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 3e-11
       SRP72   4 kgkrseetatsekgkkkkrkkkrkRkvklPKnyd.......pgvtpDPERWLPrreRSsYrk 58 
                 ++k+++ t  ++++k+k   k++kRk++  K++        ++++p  ERW+P+r+RS+Yr+
  CCD25478.1 544 DKKKINRTVINKITKEKLLIKHKKRKAQKLKKFLkshnvdlSSKPPSNERWIPLRDRSTYRP 605
                 56777788888888888777777777665444444666779999*****************7 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.6
       SRP72   9 eetatsekgkkkkrkkkrkRkvk 31 
                 + +++++ + k +++kk k+k++
  CCD25478.1 631 DISKKTTPKPKSSNAKKNKKKGR 653
                 33344444444466677777766 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.55   9.8e+02      22      69 ..      18      65 ..      12      66 .. 0.63
   2 ?    3.9   0.1     0.035        64       8      26 ..     128     146 ..     123     149 .. 0.85
   3 !   20.7   0.2   2.2e-07   0.00039       6      72 ..     196     260 ..     192     262 .. 0.90
   4 ?   -3.7   0.0       8.9   1.6e+04      36      52 ..     332     348 ..     327     350 .. 0.79
   5 ?   -3.4   0.0       6.8   1.2e+04      59      70 ..     480     491 ..     474     493 .. 0.62

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.55
      TPR_12 22 AlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelle 69
                A++ + ka + +++ll+    +   +l nL     ++++ye A+  l+
  CCD25478.1 18 AQSEHTKAEQTCQQLLNSGCTNPGDILKNLLVSIIKQDKYEHAITVLQ 65
                555566666666666666666666666666666666677777766665 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.035
      TPR_12   8 nlaavlrrlgrydeAlell 26 
                  +a++++r g+yde+  ++
  CCD25478.1 128 VRAQFCYRNGQYDESYMIY 146
                 5799***********9988 PP

  == domain 3  score: 20.7 bits;  conditional E-value: 2.2e-07
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 l+n a +l+  +++d++++llekal +a++  G ++ + ++++  L+ +y+++ +  e  ++l+e l
  CCD25478.1 196 LYNEAIILTTKEEFDQSISLLEKALSMAKNE-GYES-DIVSIQLQLAYVYQLMANKGESKDILNELL 260
                 669999**********************777.5655.9************************99976 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 8.9
      TPR_12  36 llGpdhpltattlrnLg 52 
                 +l+p++ l+++tl+n++
  CCD25478.1 332 SLNPHSSLLSRTLHNYS 348
                 56788889999999976 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 6.8
      TPR_12  59 gryeeAlellee 70 
                 g ++eA++++++
  CCD25478.1 480 GSTKEARKIFRQ 491
                 444555555554 PP

>> SRP_TPR_like  Putative TPR-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   8.3   4.4e-08   7.9e-05      21     106 ..      48     157 ..      38     167 .. 0.73
   2 ?    3.8   0.6     0.032        58      41     108 ..     189     256 ..     179     263 .. 0.83
   3 ?   -1.6   0.0       1.4   2.6e+03      53      94 ..     359     402 ..     338     417 .. 0.66
   4 ?   -3.9   0.4       7.7   1.4e+04      47      70 ..     556     579 ..     545     584 .. 0.60

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 4.4e-08
  SRP_TPR_like  21 vvaliklekyeeaLkllkkgs....alsedvrfEkaYvlYklkkykkalkilkk.................veaeekvkvlksqvlYrlgsyekA.. 94 
                    v++ik +kye a+++l+k +    +  ++v  Ek Y++Ykl++ +k  k++++                 ++++ +v ++++q  Yr g+y++   
    CCD25478.1  48 LVSIIKQDKYEHAITVLQKFKhideKYGNKVVLEKLYIYYKLNQVQKFEKLFNSrypdgvshliksnkanqTQTKRGVLHVRAQFCYRNGQYDESym 144
                   5899***************996666777889************999998887532222222221111111123334677999************977 PP

  SRP_TPR_like  95 .YklLskekkede 106
                    Y++L+ ++ ++ 
    CCD25478.1 145 iYNYLASTNDDNS 157
                   7788887776665 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.032
  SRP_TPR_like  41 salsedvrfEkaYvlYklkkykkalkilkkveaeekvkvlksqvlYrlgsyekAYklLskekkedelv 108
                   s+ s d+ + +a +l   +++ ++ ++l+k+ +  k +  +s ++    + +  Y+l++++ +++++ 
    CCD25478.1 189 SEESYDLLYNEAIILTTKEEFDQSISLLEKALSMAKNEGYESDIVSIQLQLAYVYQLMANKGESKDIL 256
                   44567888999999999999999999999999999999999999999999999999999999999886 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.4
  SRP_TPR_like  53 YvlYklkkykkalkilkkveaee..kvkvlksqvlYrlgsyekA 94 
                   Y +   k y++al ++++ ++ +  +   l+ q+l   +++++A
    CCD25478.1 359 YKTQSKKTYHHALTMINSSTGGStiGFVLLTLQLLIVEKQWDNA 402
                   44444567888888887777655455556666777666666666 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 7.7
  SRP_TPR_like  47 vrfEkaYvlYklkkykkalkilkk 70 
                   ++ Ek  +  k +k +k  k lk+
    CCD25478.1 556 ITKEKLLIKHKKRKAQKLKKFLKS 579
                   455566666666666665555554 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   0.00098       1.8      36      81 ..      19      66 ..       4      67 .. 0.84
   2 !    6.1   0.2    0.0073        13      26      49 ..     126     149 ..      83     162 .. 0.76
   3 ?    0.7   0.0      0.36   6.4e+02       5      51 ..     209     262 ..     205     287 .. 0.67
   4 ?    3.4   0.0     0.051        91      36      78 ..     364     405 ..     339     433 .. 0.88
   5 ?   -2.7   0.0       3.9     7e+03      36      54 ..     623     641 ..     623     645 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00098
                TT-HHHHHHHHHCT.SHHHC-H.HHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3 36 ngqykrAyellrka.klnsksl.gcrylfAqcllkLkkyeeAiaaLek 81
                ++++++A + ++++ ++ ++++  ++  +  + +k++kye Ai++L+k
  CCD25478.1 19 QSEHTKAEQTCQQLlNSGCTNPgDILKNLLVSIIKQDKYEHAITVLQK 66
                67899*********99999999555555667778************98 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0073
                 HHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  26 ayllAlclylngqykrAyellrka 49 
                 ++  A+  y+ngqy++ y +++ +
  CCD25478.1 126 LHVRAQFCYRNGQYDESYMIYNYL 149
                 344588888888888888888777 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.36
                 HHHHHHHHHHHH..HHH--HHH.....HHHHHHHHHHTT-HHHHHHHHHCT.SH CS
      ANAPC3   5 yknAiflaerlla.aetesped.....ayllAlclylngqykrAyellrka.kl 51 
                 ++  i l+e++l+ a++e +e+      + lA+++ l+ +  +  ++l+++  +
  CCD25478.1 209 FDQSISLLEKALSmAKNEGYESdivsiQLQLAYVYQLMANKGESKDILNELlSK 262
                 666777888888545666666667765555899999999988888888887444 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.051
                 TT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3  36 ngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaa 78 
                  + y+ A++ ++++ + ++++g  +l+ q l+  k+++ Ai++
  CCD25478.1 364 KKTYHHALTMINSS-TGGSTIGFVLLTLQLLIVEKQWDNAIRL 405
                 56799999999999.8889999999999999999999999875 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 3.9
                 TT-HHHHHHHHHCTSHHHC CS
      ANAPC3  36 ngqykrAyellrkaklnsk 54 
                 n++ ++A+++ +k+  ++k
  CCD25478.1 623 NKKAEQALDISKKTTPKPK 641
                 6889999999999854444 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.57     1e+03      13      28 ..      53      68 ..      51      74 .. 0.79
   2 ?   -0.7   0.1       1.2   2.2e+03       7      24 ..      82      99 ..      78     100 .. 0.82
   3 ?   -0.4   0.0      0.99   1.8e+03       4      24 ..     126     146 ..     124     147 .. 0.80
   4 !   11.9   0.3   0.00011       0.2       2      33 ..     194     225 ..     193     226 .. 0.93
   5 ?    4.0   0.1     0.038        69       3      29 ..     235     261 ..     233     261 .. 0.89
   6 ?    0.6   0.0       0.5   8.9e+02      14      28 ..     479     493 ..     472     499 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.57
                HTT-HHHHHHHHHHHH CS
       TPR_8 13 klgdyeeAkeyyekal 28
                k+ +ye A+ +++k  
  CCD25478.1 53 KQDKYEHAITVLQKFK 68
                6889*******99965 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.2
                HHHHHHHTT-HHHHHHHH CS
       TPR_8  7 lgsiylklgdyeeAkeyy 24
                + +iy kl++ ++ ++ +
  CCD25478.1 82 KLYIYYKLNQVQKFEKLF 99
                679******999888766 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.99
                 HHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyy 24 
                 ++  ++ +   g+y+e+   y
  CCD25478.1 126 LHVRAQFCYRNGQYDESYMIY 146
                 6678999999*****997666 PP

  == domain 4  score: 11.9 bits;  conditional E-value: 0.00011
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +++yn + i+ ++++++++++ +ekal+++++
  CCD25478.1 194 DLLYNEAIILTTKEEFDQSISLLEKALSMAKN 225
                 689999***********************987 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.038
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekale 29 
                 + ++l+++y+ + ++ e+k  +++ l+
  CCD25478.1 235 IQLQLAYVYQLMANKGESKDILNELLS 261
                 5689******************99875 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.5
                 TT-HHHHHHHHHHHH CS
       TPR_8  14 lgdyeeAkeyyekal 28 
                 lg  +eA + +++  
  CCD25478.1 479 LGSTKEARKIFRQIS 493
                 899********9965 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.097   1.7e+02       8      34 ..      15      42 ..       5      44 .. 0.82
   2 ?   -1.4   0.0       1.8   3.2e+03      12      24 ..      54      66 ..      52      71 .. 0.86
   3 ?   -3.5   0.1       8.4   1.5e+04       6      17 ..     130     141 ..     126     143 .. 0.78
   4 ?    6.4   0.0    0.0059        11       8      32 ..     202     226 ..     195     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.097
       TPR_7  8 lysrlGdyeeAielyeqsL.altkdped 34
                ++s++ ++ +A++ ++q+L   +  p+d
  CCD25478.1 15 VQSAQSEHTKAEQTCQQLLnSGCTNPGD 42
                56789************99777766665 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.8
       TPR_7 12 lGdyeeAielyeq 24
                + +ye Ai+++++
  CCD25478.1 54 QDKYEHAITVLQK 66
                6799****99986 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 8.4
       TPR_7   6 arlysrlGdyee 17 
                 a+ + r G+y+e
  CCD25478.1 130 AQFCYRNGQYDE 141
                 777888899998 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0059
       TPR_7   8 lysrlGdyeeAielyeqsLaltkdp 32 
                 +     ++++ i+l+e++L ++k +
  CCD25478.1 202 ILTTKEEFDQSISLLEKALSMAKNE 226
                 5566679**********99888765 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.12   2.1e+02      80     139 ..      47     113 ..      18     122 .. 0.71
   2 ?    9.5   0.1   0.00041      0.73       1      65 [.     198     262 ..     198     291 .. 0.88
   3 ?   -2.2   0.0       1.6   2.9e+03      19      46 ..     410     437 ..     398     441 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.12
                 HHHHHHTT-.HHHHHHHHHHHHCSSS---.HHHHHH......HHHHHHHHHHHTT-HHHHHHHHCTS CS
        RPN7  80 irvaiffnd.wdlvskylekakellekggdwerknr......lkvyeGlallairkfkeAaellldi 139
                 + v+i  +d ++++ ++l+k k + ek g++ +  +      l++ +   +l + ++ + +++l+++
  CCD25478.1  47 LLVSIIKQDkYEHAITVLQKFKHIDEKYGNKVVLEKlyiyykLNQVQKFEKLFNSRYPDGVSHLIKS 113
                 44666666635899999**********9998888773333335555555566666666666666655 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00041
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC CS
        RPN7   1 DekwveelrkknekeleeLdaelkdakenlgkeeirrakldlaehYlkigdleeAlkaysrirey 65 
                 +e+++ +++++ ++ ++ L++ l  ak+++ +++i   +l+la  Y  + ++ e+   +++++ +
  CCD25478.1 198 NEAIILTTKEEFDQSISLLEKALSMAKNEGYESDIVSIQLQLAYVYQLMANKGESKDILNELLSK 262
                 57888999**************************************9999999999999998776 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 1.6
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHH CS
        RPN7  19 LdaelkdakenlgkeeirrakldlaehY 46 
                 L++ l++  ++l +e+i+ + + l+e Y
  CCD25478.1 410 LNKSLEKSSSTLLDESIKILSYILFELY 437
                 6889999999999999999988888887 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.24   4.3e+02      13      26 ..      53      66 ..      50      74 .. 0.83
   2 ?   -2.5   0.2       4.5   8.1e+03       9      19 ..      84      94 ..      84      94 .. 0.83
   3 ?    4.4   0.1     0.027        49       4      20 ..     126     142 ..     124     143 .. 0.88
   4 ?    9.6   0.0   0.00061       1.1       2      33 ..     194     225 ..     193     226 .. 0.92
   5 ?   -2.0   0.1       3.1   5.6e+03       6      28 ..     238     260 ..     235     262 .. 0.83
   6 ?   -3.2   0.0       7.6   1.4e+04      16      26 ..     481     491 ..     479     492 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.24
       TPR_2 13 klgdyeeAleafek 26
                k+++ye A+  ++k
  CCD25478.1 53 KQDKYEHAITVLQK 66
                899*******9998 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 4.5
       TPR_2  9 layyklgdyee 19
                ++yykl++ ++
  CCD25478.1 84 YIYYKLNQVQK 94
                68****99875 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.027
       TPR_2   4 lynlGlayyklgdyeeA 20 
                 l+ +++ +y++g+y+e 
  CCD25478.1 126 LHVRAQFCYRNGQYDES 142
                 7889***********95 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00061
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 ++lyn + ++  + ++++ + ++ekAl+ + n
  CCD25478.1 194 DLLYNEAIILTTKEEFDQSISLLEKALSMAKN 225
                 589************************98876 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 3.1
       TPR_2   6 nlGlayyklgdyeeAleafekAl 28 
                 +l+++y  + +  e ++ +++ l
  CCD25478.1 238 QLAYVYQLMANKGESKDILNELL 260
                 69999999999999998888877 PP

  == domain 6  score: -3.2 bits;  conditional E-value: 7.6
       TPR_2  16 dyeeAleafek 26 
                   +eA++ f++
  CCD25478.1 481 STKEARKIFRQ 491
                 5689*999987 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.2   3.9e+03      13      26 ..      18      31 ..      15      33 .. 0.84
   2 ?   -0.7   0.0      0.83   1.5e+03      13      25 ..      53      65 ..      52      66 .. 0.81
   3 ?   -2.9   0.3       4.1   7.4e+03      10      18 ..      85      93 ..      84      94 .. 0.80
   4 ?    0.6   0.1      0.33   5.9e+02       7      19 ..     129     141 ..     125     146 .. 0.86
   5 ?   10.4   0.1   0.00025      0.45       2      31 ..     194     223 ..     193     226 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.2
                HTT-HHHHHHHHHH CS
       TPR_1 13 klgkydeAleyyek 26
                 + ++ +A++ +++
  CCD25478.1 18 AQSEHTKAEQTCQQ 31
                688999****9997 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.83
                HTT-HHHHHHHHH CS
       TPR_1 13 klgkydeAleyye 25
                k+ ky+ A+   +
  CCD25478.1 53 KQDKYEHAITVLQ 65
                899*****97665 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.1
                HHHHTT-HH CS
       TPR_1 10 ayfklgkyd 18
                +y+kl++ +
  CCD25478.1 85 IYYKLNQVQ 93
                8****9976 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.33
                 HHHHHHHTT-HHH CS
       TPR_1   7 lGnayfklgkyde 19 
                 +++ ++++g+yde
  CCD25478.1 129 RAQFCYRNGQYDE 141
                 78899*******9 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00025
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALeln 31 
                 + lyn + ++  ++++d+ +   ekAL+  
  CCD25478.1 194 DLLYNEAIILTTKEEFDQSISLLEKALSMA 223
                 789************************976 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.9   5.2e+03      13      28 ..      19      34 ..      15      35 .. 0.80
   2 ?   -3.1   0.0       9.4   1.7e+04      13      26 ..      54      67 ..      52      68 .. 0.79
   3 ?    0.5   0.0      0.65   1.2e+03       9      24 ..     133     147 ..     125     155 .. 0.80
   4 ?   -2.8   0.0       7.6   1.4e+04      15      27 ..     208     220 ..     195     221 .. 0.70
   5 ?    4.8   0.0     0.028        50       3      29 ..     236     262 ..     235     267 .. 0.87
   6 ?   -2.0   0.0       4.2   7.5e+03      14      28 ..     397     411 ..     389     412 .. 0.76
   7 ?   -0.0   0.0         1   1.8e+03      13      26 ..     479     492 ..     474     497 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.9
                HHHHHHHHHHHHHHHH CS
       TPR_6 13 lgdtdkAlealerlik 28
                + +++kA ++ ++l++
  CCD25478.1 19 QSEHTKAEQTCQQLLN 34
                45789999*****997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.4
                HHHHHHHHHHHHHH CS
       TPR_6 13 lgdtdkAlealerl 26
                +++++ A++ l+++
  CCD25478.1 54 QDKYEHAITVLQKF 67
                6677789999*998 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAleale 24 
                 +yr++ ++d++  +++
  CCD25478.1 133 CYRNG-QYDESYMIYN 147
                 77777.****999997 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 7.6
                 HHHHHHHHHHHHH CS
       TPR_6  15 dtdkAlealerli 27 
                 + d+++ +le+ +
  CCD25478.1 208 EFDQSISLLEKAL 220
                 7899999999876 PP

  == domain 5  score: 4.8 bits;  conditional E-value: 0.028
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlike 29 
                 +++la+ y+ + ++ +++++l++l+++
  CCD25478.1 236 QLQLAYVYQLMANKGESKDILNELLSK 262
                 589*******77************987 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 4.2
                 HHHHHHHHHHHHHHH CS
       TPR_6  14 gdtdkAlealerlik 28 
                 +++d+A+++ e +++
  CCD25478.1 397 KQWDNAIRLSELFLN 411
                 69****998776665 PP

  == domain 7  score: -0.0 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHH CS
       TPR_6  13 lgdtdkAlealerl 26 
                 lg t +A+++++++
  CCD25478.1 479 LGSTKEARKIFRQI 492
                 67899******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1691  (0.0943165); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 4392.36
//
Query:       CCD25479.1  [L=412]
Description: hypothetical protein NDAI_0F01600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-72  244.5   0.0    1.6e-72  244.1   0.0    1.2  1  Pkinase         Protein kinase domain
    3.2e-47  161.0   0.0    4.3e-47  160.6   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    3.5e-06   26.5   0.1    1.4e-05   24.5   0.0    2.0  3  Kinase-like     Kinase-like
     0.0044   16.4   0.1      0.012   15.0   0.0    1.6  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.072   13.0   0.0       0.12   12.3   0.0    1.3  1  APH             Phosphotransferase enzyme family
       0.15   11.4   0.0       0.28   10.5   0.0    1.4  1  APH_6_hur       Aminoglycoside/hydroxyurea antibiotic resista
       0.26   10.9   4.0       0.33   10.6   0.0    2.6  3  FTA2            Kinetochore Sim4 complex subunit FTA2
       0.27    9.9   0.0       0.27    9.9   0.0    1.7  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.1   0.0     7e-76   1.6e-72       1     264 []     154     405 ..     154     405 .. 0.95

  Alignments for each domain:
  == domain 1  score: 244.1 bits;  conditional E-value: 7e-76
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 +e  +klG+G+fGkVy +++ke+g i A+K ++k+++ + +  ++++rE++i  +l+hpn+ +ly+ f++++++yl++ey+  gel +ll+ +g +++ 
  CCD25479.1 154 FEIGKKLGKGKFGKVYCVKHKESGFICALKAMDKSEIIQYNLqRQFRREVEIQTSLNHPNLTKLYGHFYDDKRVYLIMEYLVYGELYKLLRSHGPFNDI 252
                 57899*******************************99877679******************************************************* PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                  a+++++qi+ +l++lH+kgiiHrDlKpeNiLi  +++lK+tDFG +    ++ k ++ +gt +Yl+PE+++++ey+ +vDvW+lGv+ yel++g ppf
  CCD25479.1 253 IASRFVYQIADALNHLHEKGIIHRDLKPENILIGFNNVLKLTDFGWSIINPKGVKRKTLCGTIDYLSPEMIRSREYDDTVDVWALGVLTYELVAGDPPF 351
                 *************************************************************************************************** PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 ++++++ +++++l+              +++ + ++s++++dl+++llk dpk+R+  +e++ hp++
  CCD25479.1 352 EEDSKELTYKRILKG-------------EIRFPGTVSQDVRDLISRLLKNDPKERILLKEVMVHPWI 405
                 *66655555555555.............78999*********************************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.6   0.0   1.9e-50   4.3e-47       2     256 ..     155     400 ..     154     402 .. 0.93

  Alignments for each domain:
  == domain 1  score: 160.6 bits;  conditional E-value: 1.9e-50
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS..SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeea..teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  e+gkklG+G+fGkV+  + k    ++   +a+K ++++   + + ++++ +e++i ++l+hpn+ kl+g  ++++++++++ey+ +G+L k Lr++  
   CCD25479.1 155 EIGKKLGKGKFGKVYCVKHK----ESGFICALKAMDKSEiiQYNLQRQFRREVEIQTSLNHPNLTKLYGHFYDDKRVYLIMEYLVYGELYKLLRSH-- 246
                  689************98888....999********654411444499************************************************9.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                   +++     +f++q+A+++++L++k ++Hrdl   N+L+  n+v k++DfG +       + vk+++    + +++pE+++++++    DvW+ Gvl+
   CCD25479.1 247 GPFNDIIASRFVYQIADALNHLHEKGIIHRDLKPENILIGFNNVLKLTDFGWSIIN---PKGVKRKTLCGTIDYLSPEMIRSREYDDTVDVWALGVLT 341
                  99999999*******************************************99865...88899999999**************************** PP

                  HHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 196 wEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256
                  +E++  g+ p+++ ++e +++++ +g+ ++ p ++++++ +l+++ +++dp+eR  ++e++
   CCD25479.1 342 YELVA-GDPPFEEDSKELTYKRILKGE-IRFPGTVSQDVRDLISRLLKNDPKERILLKEVM 400
                  ****9.*****************8875.789999********************9999875 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1         2   4.5e+03      49      67 ..      10      28 ..       2      56 .. 0.62
   2 ?   -2.7   0.0       1.3   2.8e+03      17      42 ..     157     182 ..     150     209 .. 0.77
   3 !   24.5   0.0   6.4e-09   1.4e-05     151     288 .]     259     393 ..     229     393 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
  Kinase-like 49 seaskkdlerlkeqelair 67
                 s+ sk ++++ +++ l+ r
   CCD25479.1 10 SHDSKLEIQKSRRESLQQR 28
                 5556666666666555443 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
  Kinase-like  17 gellkkgdrsvvfevkdqetgeplav 42 
                  g+ l+kg++++v+ vk +e g   a+
   CCD25479.1 157 GKKLGKGKFGKVYCVKHKESGFICAL 182
                  56688899999999988887655554 PP

  == domain 3  score: 24.5 bits;  conditional E-value: 6.4e-09
  Kinase-like 151 lqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwcl 246
                   q+     +L++kg++h +++++n+l   +  l+l++f+  +   + v+  + +    +  pE++ sr          +   +d+W+lG+  y + + 
   CCD25479.1 259 YQIADALNHLHEKGIIHRDLKPENILIGFNNVLKLTDFGWSIINPKGVKRKTLCgtIDYLSPEMIRSRE---------YDDTVDVWALGVLTYELVAG 347
                  566777789*****************************9655554444445666344467788888743.........44479*************** PP

  Kinase-like 247 klPltlateeakeewkfk.lck...kipekvkaLlkkfLqlsqedR 288
                  + P++++ +e   + ++k  ++    +++ v+ L+ ++L+ + ++R
   CCD25479.1 348 DPPFEEDSKELTYKRILKgEIRfpgTVSQDVRDLISRLLKNDPKER 393
                  ********99998875542233324899***********9988776 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         1   2.3e+03      83     111 ..      20      48 ..      17      64 .. 0.71
   2 !   15.0   0.0   5.4e-06     0.012     105     152 ..     239     286 ..     223     299 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1
         Kdo  83 avkvgleyrAlllterlegaqdLedllak 111
                  +++ l++r +llt rl+ ++   ++ + 
  CCD25479.1  20 SRRESLQQRNALLTMRLNSTNPQRMVKKP 48 
                 57888899999999999887655555555 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 5.4e-06
         Kdo 105 LedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillq 152
                 L +ll+++  +++    + + +++ + + lh+ g+ H+dl + nil+ 
  CCD25479.1 239 LYKLLRSHGPFNDIIASRFVYQIADALNHLHEKGIIHRDLKPENILIG 286
                 566666655577777888999*************************86 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.2e-05      0.12     152     181 ..     258     286 ..     225     297 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 5.2e-05
                 HHHHHHHH--SSS-EEEE-SS-SGGGEEEC CS
         APH 152 vlaalaallpgelptvllHgDlhpgNllvd 181
                 v++  +al +   +++++H+Dl+p N+l+ 
  CCD25479.1 258 VYQIADALNH-LHEKGIIHRDLKPENILIG 286
                 4444444444.469**************86 PP

>> APH_6_hur  Aminoglycoside/hydroxyurea antibiotic resistance kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00013      0.28     153     187 ..     265     306 ..     245     322 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00013
   APH_6_hur 153 leepselrpLHgdlhhenvLager.......rgWlaidPkgl 187
                 l++ +e + +H dl+ en+L g +        gW +i+Pkg+
  CCD25479.1 265 LNHLHEKGIIHRDLKPENILIGFNnvlkltdFGWSIINPKGV 306
                 677799999******99998887667777779********98 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.65   1.5e+03     130     174 ..      15      64 ..       2      78 .. 0.57
   2 ?    0.4   0.1      0.19   4.2e+02      21      52 ..     150     184 ..     138     228 .. 0.70
   3 ?   10.6   0.0   0.00015      0.33     176     206 ..     256     286 ..     248     300 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.65
        FTA2 130 levqnsfaketedrsralgeedgkkrpiraIVKel.....ellkeqeele 174
                 le q+s  ++ ++r+  l ++ + ++p r + K++     + ++  ++++
  CCD25479.1  15 LEIQKSRRESLQQRNALLTMRLNSTNPQRMVKKPWrasnsHQQTPHHKTS 64 
                 33333333333467777788888888888888888655543333333333 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.19
        FTA2  21 e.kdiefleyLgkglhsiVlkvkirgk..eYALKl 52 
                 + +d+e+ + Lgkg  + V+ vk +++  + ALK 
  CCD25479.1 150 TlQDFEIGKKLGKGKFGKVYCVKHKESgfICALKA 184
                 3478999999*********9999999855668884 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00015
        FTA2 176 sqlpkllrdlkklhklgIvvrDlkeenyidg 206
                 + + ++ + l+ lh+ gI++rDlk+en++ g
  CCD25479.1 256 RFVYQIADALNHLHEKGIIHRDLKPENILIG 286
                 56789999*******************9866 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   1.2      0.46     1e+03     218     267 ..      17      64 ..       2     136 .. 0.47
   2 ?    9.9   0.0   0.00012      0.27     317     341 ..     263     286 ..     253     331 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.46
  Pkinase_fungal 218 i.aeiRkgldvtka.ekfrskrkvvsssssqelsskaevklkksesskkvek 267
                     i ++ R++l+ ++a  ++r + +  +++ +++ + +++ ++++    ++ ++
      CCD25479.1  17 IqKSRRESLQQRNAlLTMRLNSTNPQRMVKKPWRASNSHQQTP----HHKTS 64 
                     2233344444443322222222222222222222222222222....22222 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00012
  Pkinase_fungal 317 kghrsLflkagiLHrDiSenNilit 341
                      +++ L+ ++gi+HrD   +Nili 
      CCD25479.1 263 DALNHLH-EKGIIHRDLKPENILIG 286
                     577899*.***************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       814  (0.0454013); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 2993.93
//
Query:       CCD25480.1  [L=579]
Description: hypothetical protein NDAI_0F01610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-08   35.7   0.2    1.9e-08   34.9   0.2    1.5  1  SET       SET domain


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.2   1.1e-12   1.9e-08      26     169 .]      66     290 ..      30     290 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 1.1e-12
                 CHHHHHHHHHH................................HTEEEEEXGGXX.GGSX.HHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHX CS
                 xxxxxxxxxxx................................xxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  26 tkdeadksele................................aylfslpeapkn.laft.kelakasastllqklakdqkqaekedtdaalkasskae 90 
                 t+de+++s l+                                +y++ lp+   +   +t +el  +++++l+++l ++ +   ke+++  +k+   + 
  CCD25480.1  66 TNDENNNSWLKllfaklkfdnkatylsteegndkneplnlkfkPYIDALPKIVDSpYLWTpNELKLLKGTNLYNSLFGKLHTIFKEWYNLINKMNERES 164
                 333333333337777777777777788888888888899999999999998877767788*************************************** PP

                 TTTS................X..................................XXHCCCCCHCCCHEEEETEEEEEECCCGTTGGGCEEXSSSSEEE CS
                 xxxx................x..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  91 sdln................a..................................skpeagafsaiagysidaralksgngagplarflNHsCdpNcnl 139
                 s+++                +                                    ++   ++a+ +y+id +  +s     p+++++NH+   N+++
  CCD25480.1 165 SNFQvdftlvegelkiydnwSnidfhnnyhefynkiiletveqrpkcwysfssflWSHLIFISRAFPEYVIDNTRSPSNVVLLPIIDLMNHDY--NAKV 261
                 ****888777777666655505556666666677777777777777788877755444444448889999998888888888*********98..9999 PP

                 EEEEETTSSEEEE.EESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
         SET 140 tvqnvlrgprvav.fAtrdIkkGeEltidYg 169
                 ++++  +++ +++ +    I+++ El+++Yg
  CCD25480.1 262 QWSS--TNGGFTYnYIGGTIAENKELFNNYG 290
                 9999..4444444255789***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4424.96
//
Query:       CCD25481.1  [L=843]
Description: hypothetical protein NDAI_0F01620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-23   82.0   0.0      7e-23   80.8   0.0    1.7  1  Wyosine_form  Wyosine base formation
    4.6e-22   79.2   0.0    9.8e-22   78.1   0.0    1.6  1  Radical_SAM   Radical SAM superfamily
    7.3e-15   55.4   0.0    1.7e-14   54.3   0.0    1.6  1  Flavodoxin_1  Flavodoxin


Domain annotation for each model (and alignments):
>> Wyosine_form  Wyosine base formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   1.2e-26     7e-23       1      63 []     676     745 ..     676     745 .. 0.97

  Alignments for each domain:
  == domain 1  score: 80.8 bits;  conditional E-value: 1.2e-26
                   HHT-SEEEEEE--------...----------HHHHHHHHH....HHHTSSS.EEEEEEETTTTEEEEEE CS
  Wyosine_form   1 kaepdFvEvKaytyvGssr...srLtmknvPwheevadfak....rlegsaedYellaehrhSrvvllar 63 
                   +++p+F+EvK+ t++Gss+   ++Ltm+n+P++ee+++f+k    +l+++++ Ye++aeh+hS+++l+a+
    CCD25481.1 676 RGQPCFIEVKGATFSGSSNgngNPLTMQNIPYYEECKKFVKnfseELQRRGLGYEVAAEHAHSNCILIAN 745
                   69***************************************99999999999****************96 PP

>> Radical_SAM  Radical SAM superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   1.6e-25   9.8e-22       2     167 .]     491     674 ..     490     674 .. 0.95

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 1.6e-25
                  EEESEESS--TTTSCCTT..HHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE.....................SSTGGGSTTHHHHHHHHHHTCCC CS
                  xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM   2 vvtrgCnlrCsfCarpet..vrregrgrslsveeileevkelkaekgvkevilg.....................ggepllypdfvellerlaklavp 76 
                  +++ +C+ +C+fC+r+ t  v++++r+++ ++e+ile + ++++++ +k++  +                      gep++yp++ +++e l+++   
   CCD25481.1 491 TPSLACSSKCVFCWRHGTnpVSKNWRWETDDPEYILENALAAHYSM-IKQMRGVpgiiaerftkafkvghcalslVGEPIMYPHINRFVELLHEK--- 584
                  56789*************************************8777.9999999****************************************9... PP

                  TEEEEEEECSSCHGHHHHHHHHHTT.-SEEEEEEBSSSHH...HHHHHHTCTSHHHHHHHHHHHHHHTTSET.EEEEEEEBTTTSHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxx RF
  Radical_SAM  77 giritvetngtlpdeeklerllelg.vdrvslgleaadde...kvlklmnrghtfeevlealeklreagikr.vvdrivglpGendeeleellell 167
                  +i+ ++++n+ +p     e+l   g v++++++++a++++   kv +++  ++ +e+ l++l+++r ++ +  +v+r+++++G+n+ ++  +++l+
   CCD25481.1 585 EITSFLVCNAQHP-----EALESVGkVTQLYVSIDAPTKDelkKVDRPL-YKDFWERMLQCLDIIRTKQSHQrTVFRLTLVKGFNMGDISSYADLV 674
                  ************8.....88888888***********************.******************98889***************99998875 PP

>> Flavodoxin_1  Flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   2.8e-18   1.7e-14       1     143 []     220     368 ..     220     368 .. 0.88

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 2.8e-18
                   EEEETSSSHHHHHHHHHHHHHHH...TTTEEEEEEEEGTTSC...GGGGGTHSEEEEEEEEETTTBEEGGGH.HHHHHHHHHHCHHGCCSTTTTEEE CS
  Flavodoxin_1   1 ilYgSetGnteklAkqlaeelge...hgfnadvvslsdydes...lseieeealllvvtsTfgnGdppenge.sffqdllelkgdeledgdlsgvrf 90 
                   ++Y S +G +e  A +++++l++    + ++++++l+++++    + +++ e+ l++ +++ ++ d+p ++  ++ ++ +++++  + ++  + v +
    CCD25481.1 220 VFYSSLQGAAERSAIKVHKILSNmeeLKNEPKLMNLDELNDIdeyFVDVPCENALYILVLPSYDVDCPLDYFlQTLEENYNDFRV-EGFPLRKLVGY 315
                   8*******************9984223445666766666655899999999*******************999999999999965.8889999**** PP

                   EEEEEECTTSSS..TTHHHHHHHHHHHHTTCEEESSSEEEETTSTHGHHHHHHHH CS
  Flavodoxin_1  91 avfglGdsayen..FcaagkkldekleelGaerllkllegdednqegqeeafrkW 143
                    v+glGd + +   Fc+ ++  d+++ +lG++r+++++e+  ++  g +  +++W
    CCD25481.1 316 TVLGLGDLETWVdkFCYQARNADHWIAKLGGRRIFPVGEICMKT--GGDPKIEEW 368
                   ********99999****************************999..777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1514  (0.0844442); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 5572.77
//
Query:       CCD25482.1  [L=326]
Description: hypothetical protein NDAI_0F01630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-27   94.6   0.1    1.2e-26   94.1   0.1    1.3  1  GDPD      Glycerophosphoryl diester phosphodiesterase family


Domain annotation for each model (and alignments):
>> GDPD  Glycerophosphoryl diester phosphodiesterase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.1   6.5e-31   1.2e-26       1     257 [.      11     248 ..      11     250 .. 0.91

  Alignments for each domain:
  == domain 1  score: 94.1 bits;  conditional E-value: 6.5e-31
                 TTTTTTTSSTTSHHHHHHHHHTT-SEEEEEEEE-TTS-EEE-SSSBSTTTCSCCCH.BGGGS-HHHHHTSTECCTTCCCCSCCCSSGCCB...BHHHHH CS
        GDPD   1 HRGasgnlpEnTlesfakAaelGadyiEfDvqlTkDgvpVvlHDfnldrttdvagrldvkdltleelkrldkiakenkaqlsenrvrlefpfptleevl 99 
                 HR++ g++pEnTl++f++A+ + ad iE+D+q+T+Dg++V+ HD ++ r+++++    +++  ++++ +l    ++      ++++    +  tle++l
  CCD25482.1  11 HRAFRGKYPENTLLAFNEAYNAKADIIETDLQMTSDGIIVINHDADTGRMWNKNI--IISHSLMDDISKLY---CKT-----DSNL----KMLTLEDAL 95 
                 *******************************************************..9999999*****99...444.....2333....458888888 PP

                 HH...HHHCCSEEEEEEECCCCCCCHHHH..HHTCHHHCCCCCSCHHTT..STTCSCEEEESTHHHHHHHHHTCTCTEEEEEEHHHHHHC-E.EECHCC CS
        GDPD 100 kk...pqnvglnieikipmlseakeeeel..qivkeilksvdeilkkvlkkadkrkvifssfnpdilkllrekqpklpllflteggteaeadssleraa 193
                  +    +nv+l+++ k++ ++ +  + ++     k+ lk+++++  + l+  d+  + +++  ++ +k +   ++ l ++  + + + + +      ++
  CCD25482.1  96 NWlvaHPNVKLMLDTKFTNNKIILVKAFSemLRIKNDLKYWQKRIIWGLWLVDWYEYGVETGVLKDFKFIVISLS-LDIAKQFIDYSLKLNN----PHY 189
                 888888****************99999987755666777777777799***************************.9999999877777777....89* PP

                 CCCCCTCCCCHHCCCHCCCEB.CHHHHHHHTT-EEEEBSB-THSHHHHHHHHCCC-SEEEES-H CS
        GDPD 194 kfakadallgevsavaeglgdpdlVkraksrglvvhvytvnnedeeemkrlleagvdgvitDfp 257
                 k  + + +  ++++ + +   ++l+  +k +  +++ +tvn+    + k+ +e+ ++gv+tD+p
  CCD25482.1 190 KLYGISIHFVSSWTDQFR---TELLPILKLNEFKIYLWTVNKS--IDFKYSCELPIEGVVTDDP 248
                 *99999999999999999...99********************..*****************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       619  (0.0345251); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2394.51
//
Query:       CCD25483.1  [L=587]
Description: hypothetical protein NDAI_0F01640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-24   87.1   0.0    1.2e-24   87.1   0.0    1.7  2  Pkinase         Protein kinase domain
    3.2e-14   52.8   0.0    6.5e-14   51.8   0.0    1.5  1  Pkinase_Tyr     Protein tyrosine kinase
    4.2e-08   32.4   0.5    4.2e-08   32.4   0.5    2.2  2  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.027   14.4   0.0      0.027   14.4   0.0    2.0  3  APH             Phosphotransferase enzyme family
      0.091   11.9  12.1       0.16   11.2  12.1    1.4  1  DUF1682         Protein of unknown function (DUF1682)
        3.2    7.8   9.3        1.7    8.7   6.4    2.1  2  DUF3915         Protein of unknown function (DUF3915)
        4.9    7.4  21.0       0.79   10.0  17.0    1.6  2  PNISR           Arginine/serine-rich protein PNISR


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   4.7e-28   1.2e-24       1     210 [.       9     226 ..       9     270 .. 0.81
   2 ?   -4.6   2.0       4.5   1.2e+04      43      50 ..     456     463 ..     437     488 .. 0.48

  Alignments for each domain:
  == domain 1  score: 87.1 bits;  conditional E-value: 4.7e-28
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHH.HHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdely.lvleyveggeladlle.rkgslse 97 
                 y+  +k+G GsfG +y +++  +g+++A+K+ +++ +  +    +  E ++ + ++    + ++++f ++ e+  ++l+++   +l+dl +  ++s+s 
  CCD25483.1   9 YRLGRKIGAGSFGDIYHGTNLLSGEEIAIKVESVRTKHPQ----LEYESRVYRYISGGIGIPIIRWFGREGEFNaMILDLLGP-SLEDLFNyCRRSFSF 102
                 67789*************************9888877765....559*********888888888888877776588998874.477776654568*** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelesssk........ltsfvgtseYlAPEvlkeneyskkvDvWslG 184
                 +++  +a q+l+ ++y+H +++iHrD+Kp+N+L+ ++ +    + i+DFGl+k+++  ++         +s +gt +Y +     + e s+  D+ slG
  CCD25483.1 103 KTIIMLALQMLSRIQYVHGRSFIHRDIKPDNFLMGTTHHqnniVHIIDFGLSKKYRDFHShkhipyreNKSLTGTARYASISTHMGIEQSRRDDLESLG 201
                 **********************************954445789***********998877889*****************998899999********** PP

                 HHHHHHHHSS-STTTSSHHHHHHHHH CS
     Pkinase 185 vilyelltgkppfsgekgkekvekel 210
                  il+ +  g+ p++g + ++k+ +++
  CCD25483.1 202 YILIYFAKGSLPWQGLRATTKK-QKY 226
                 **************65554422.222 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 4.5
                 HHHHHHHH CS
     Pkinase  43 kkvlrEik 50 
                 k++ rE +
  CCD25483.1 456 KRMEREQE 463
                 33333333 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   2.5e-17   6.5e-14       2     255 ..      10     270 ..       9     274 .. 0.78

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 2.5e-17
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkeke 98 
                  +lg+k+G+G+fG++++gt       + +++a+K+ + ++++    +l  e ++ + ++    + ++ +   ++e   ++++++   +L++  +   ++
   CCD25483.1  10 RLGRKIGAGSFGDIYHGTNL----LSGEEIAIKVESVRTKHP---QLEYESRVYRYISGGIGIPIIRWFGrEGEFNAMILDLLGP-SLEDLFNYC-RR 98 
                  5789**************99....78899****986655555...6777777777776655555555555255668999999854.566666665.66 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE....TTEEEE-STTTHEET...TTSSEE...EETTSSTSGGGGS-HHHHHHSEEEHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse....nkvvkisDfGLardi...ekddey...vkkeeaklpvkWmapEslkekkftsks 186
                  ++++k+++ +alq+ + ++y++ ++++Hrd+   N L+ +    n++v i DfGL+++    ++++     +++++ +   ++ ++ + +  + + + 
   CCD25483.1  99 SFSFKTIIMLALQMLSRIQYVHGRSFIHRDIKPDNFLMGTthhqNNIVHIIDFGLSKKYrdfHSHK-HipyRENKSLTGTARYASISTHMGIEQSRRD 195
                  7*************************************86666699**********9984322222.13438888889999***************** PP

                  HHHHHHHHHHHHHTTSSGTTTTS...HHHHHHHHH.HTTEES-BBTTS...BHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr 187 DvWsfGvllwEiftlgespypgl...kneevlekl.kegkrlekpekc...peelyelmkkcweedpeeRptfsel 255
                  D  s G +l+  ++ g+ p++gl   ++++ ++ + +++   +  + c   p ++++ ++ c + + e+Rp++s l
   CCD25483.1 196 DLESLGYILIYFAK-GSLPWQGLratTKKQKYHLIlEKKLTTSIERLCsglPVQFAQYIEYCRTLKFEQRPDYSYL 270
                  ******99996655.****99985434455666664555555555555222679999**************99877 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.5   1.6e-11   4.2e-08     327     407 ..     123     207 ..     115     208 .. 0.89
   2 ?    1.3   1.9     0.045   1.2e+02     233     282 ..     430     480 ..     373     532 .. 0.52

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 1.6e-11
  Pkinase_fungal 327 giLHrDiSenNilitdskkegerkglLiDLDlakelsddsses.....garertGTleFmaievlkgeeHsyrhDLESffyvllwi 407
                      ++HrDi  +N l+  +++++++   +iD+ l k++ d +s++     +++  tGT+ + +i   +g+e s r+DLES+ y+l++ 
      CCD25483.1 123 SFIHRDIKPDNFLMG-TTHHQNNIVHIIDFGLSKKYRDFHSHKhipyrENKSLTGTARYASISTHMGIEQSRRDDLESLGYILIYF 207
                     579************.5566789999***********988888666665599*******************************996 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.045
  Pkinase_fungal 233 frskrkvvsssssqe.......lsskaevklkksesskkvekrsvdssvstskrsr.....l 282
                     +++           +       l++ ++ k++++e +k++e ++ +++ +++++++     +
      CCD25483.1 430 LER-----------ArcrrtehLRKLEKQKQREEEQEKRMEREQEQEQEPEQEQEQeilrlT 480
                     222...........022222223344444444444444444333333332222222234442 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.8   9.8e+03      57      81 ..      39      63 ..      29      79 .. 0.57
   2 ?   14.4   0.0     1e-05     0.027     166     196 ..     122     154 ..      83     157 .. 0.88
   3 ?   -3.5   1.6         3   7.7e+03     131     133 ..     459     461 ..     426     496 .. 0.46

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.8
                -CTTBS-EEETTEEEEEEE----EE CS
         APH 57 vlagdtddeeigllfalieyvpgrs 81
                v   +t + +++++++++ y+ g +
  CCD25483.1 39 VESVRTKHPQLEYESRVYRYISGGI 63
                4445555555555555555555543 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 1e-05
                 EEEE-SS-SGGGEEEC....TTEEEEE---TT- CS
         APH 166 tvllHgDlhpgNllvd..pddgrvtGviDfeda 196
                 ++++H+D++p+N+l+    +++ ++ +iDf+++
  CCD25483.1 122 RSFIHRDIKPDNFLMGttHHQNNIVHIIDFGLS 154
                 789*************9977777778****986 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3
                 CHH CS
         APH 131 sat 133
                 ++ 
  CCD25483.1 459 ERE 461
                 111 PP

>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2  12.1   6.1e-05      0.16     242     313 ..     416     488 ..     342     491 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6.1e-05
     DUF1682 242 lrliDkla..kraklrpevlkklkktReevekklkkeaeeekaEeaqekkeeekkkereeklaklspeeqrKye 313
                 +r+++ ++  + ++l     ++++  R+ +++k ++e++e++ E  qe+ +e ++++++e + +l++e+++K+ 
  CCD25483.1 416 CRIPNEITqyMDMELERARCRRTEHLRKLEKQKQREEEQEKRMEREQEQEQEPEQEQEQE-ILRLTSEQREKLS 488
                 566666666666788888889999999999999999999999888886666555555555.6699999999975 PP

>> DUF3915  Protein of unknown function (DUF3915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       5.3   1.4e+04       5      18 ..     151     163 ..     150     172 .. 0.70
   2 ?    8.7   6.4   0.00065       1.7      20      55 ..     446     481 ..     427     497 .. 0.80

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 5.3
     DUF3915   5 fgcredfrechrgh 18 
                 fg  +++r+ h  h
  CCD25483.1 151 FGLSKKYRDFHS-H 163
                 899999999996.3 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00065
     DUF3915  20 cdrdrerererederekerekkkerhavcnvlasia 55 
                  +++re e+e++ ere+e+e+++e+++  ++l+  +
  CCD25483.1 446 KQKQREEEQEKRMEREQEQEQEPEQEQEQEILRLTS 481
                 3678999999***************99998888655 PP

>> PNISR  Arginine/serine-rich protein PNISR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       2.3     6e+03      70      78 ..     342     350 ..     305     378 .. 0.55
   2 ?   10.0  17.0   0.00031      0.79      16     109 ..     439     537 ..     438     565 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.3
       PNISR  70 edeksdeee 78 
                 ++ek++ee+
  CCD25483.1 342 SQEKKKEEK 350
                 222222222 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00031
       PNISR  16 eGLEKmerEKqkklererr..ekeraerrkeekkesskeeeeaknprnlakskfdse...deksdeeeeegaegedsesqekasskksevdeqespeee 109
                 e L K+e+ Kq++ e+e+r  +++++e++ e+++e+++   +++++++l+ +k d +   +e s++e+ e++ + d + q++  ++ + ++e+++ +++
  CCD25483.1 439 EHLRKLEKQKQREEEQEKRmeREQEQEQEPEQEQEQEILRLTSEQREKLSALKLDPKpilKETSMKEALEEEGDGDIAGQKNIAEQGKVFEEHHQLNNK 537
                 7899*************9964344444477889999999999999999999999986222344444443333333333444444444434444444222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2376  (0.132523); expected 358.6 (0.02)
Passed bias filter:                      791  (0.0441185); expected 358.6 (0.02)
Passed Vit filter:                       111  (0.00619109); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.30s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 4029.60
//
Query:       CCD25484.1  [L=367]
Description: hypothetical protein NDAI_0F01650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-71  241.4   0.0    1.6e-71  240.8   0.0    1.3  1  Pkinase         Protein kinase domain
    2.1e-39  135.4   0.0    2.9e-39  134.9   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    7.8e-07   28.7   0.4    3.8e-06   26.4   0.4    2.2  1  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.023   13.7   2.6      0.055   12.4   2.6    1.5  1  Haspin_kinase   Haspin like kinase domain
      0.027   14.0   1.5      0.082   12.4   0.0    2.2  2  YrbL-PhoP_reg   PhoP regulatory network protein YrbL
      0.057   12.5   0.0      0.097   11.7   0.0    1.3  1  Seadorna_VP7    Seadornavirus VP7
       0.39   10.3   0.0       0.39   10.3   0.0    1.9  3  RIO1            RIO1 family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.8   0.0   6.3e-75   1.6e-71       1     264 []      57     311 ..      57     311 .. 0.95

  Alignments for each domain:
  == domain 1  score: 240.8 bits;  conditional E-value: 6.3e-75
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 ++ +++lG+GsfG+V  +++ ++g+ +A+K++kk+++  +k+ +++  E ++lk ++hp+++r++++f++++++++v++y+eggel++ll++++ +++ 
  CCD25484.1  57 FQIMRTLGTGSFGRVHLVRSVHNGRYYAIKVLKKHQIVRMKQiEHTNDERRMLKLVEHPFLIRMWGTFQDSRNIFMVMDYIEGGELFSLLRKSQRFPNP 155
                 57889***********************************999******************************************************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-ST CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppf 197
                  ak++a+++  +leylH+++ii+rDlKpeNiL+d++g++KitDFG+ake+e+ +   + +gt++Y+APEv+ +++y k+vD+WslG++++e+l+g +pf
  CCD25484.1 156 VAKFYAAEVTLALEYLHHHNIIYRDLKPENILLDRNGHIKITDFGFAKEVETVT--WTLCGTPDYIAPEVIATKPYNKSVDWWSLGILIFEMLAGYTPF 252
                 ***************************************************965..******************************************* PP

                 TTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.....HHHHHTSGGG CS
     Pkinase 198 sgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.....aeellqhpyl 264
                 ++++  +++ek+l+              k+  ++ + +++ dll +l++ d ++R++      ++++ hp++
  CCD25484.1 253 YDSTPMKTYEKILQG-------------KVIFPTFFHPDVVDLLGQLITADLTRRIGnlqsgSKDIKCHPWF 311
                 *77777777777776.............455677799*******************999999999*****98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.0   1.1e-42   2.9e-39       2     249 ..      58     294 ..      57     298 .. 0.89

  Alignments for each domain:
  == domain 1  score: 134.9 bits;  conditional E-value: 1.1e-42
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS..SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeea..teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  ++ ++lG G+fG+V+  +      ++    a+K+lk+++  + ++ e+  +e +++k ++hp ++++ g   +++++++v++y++gG+L + Lrk+  
   CCD25484.1  58 QIMRTLGTGSFGRVHLVRSV----HNGRYYAIKVLKKHQivRMKQIEHTNDERRMLKLVEHPFLIRMWGTFQDSRNIFMVMDYIEGGELFSLLRKS-- 149
                  6789***********99988....67778899999765422556677888899999999************************************8.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                  +++       +a++v  ++eyL++++++ rdl   N+Ll++n ++ki+DfG a+++      +++ +      ++apE++ +k ++++ D Ws G+l+
   CCD25484.1 150 QRFPNPVAKFYAAEVTLALEYLHHHNIIYRDLKPENILLDRNGHIKITDFGFAKEV-----ETVTWTLCGTPDYIAPEVIATKPYNKSVDWWSLGILI 242
                  778888888899********************************************.....455566666779************************* PP

                  HHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 196 wEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                  +E++  g +p+ + ++++++ek+ +gk +  p+  ++++ +l+ +  ++d ++R
   CCD25484.1 243 FEMLA-GYTPFYDSTPMKTYEKILQGKVI-FPTFFHPDVVDLLGQLITADLTRR 294
                  ****9.*****************999765.677788888888888888877777 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.4   1.5e-09   3.8e-06     125     260 ..     140     262 ..      23     294 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.5e-09
  Kinase-like 125 eilnkvlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve..kgfaPpEllgsrggyt 220
                  + l+++l k + + ++ ++   + +Tl       +L+++ ++  +++++n+lld++g +++++f+    + t       +    +  pE+++ +    
   CCD25484.1 140 GELFSLLRKSQRFPNPVAKFYAAEVTL----ALEYLHHHNIIYRDLKPENILLDRNGHIKITDFGFAKEVETVTWT--LCgtPDYIAPEVIATK---- 227
                  567788888888866666665566666....458******************************988888777764..3322567788999983.... PP

  Kinase-like 221 rknktkmthkldaWqlGlviyriwclklPltlateeakee 260
                        +  ++d W lG+ i+ + + + P+   t+    e
   CCD25484.1 228 -----PYNKSVDWWSLGILIFEMLAGYTPFYDSTPMKTYE 262
                  .....344589*******************9998876655 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.6   2.1e-05     0.055      71     255 ..      19     203 ..      13     212 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.1e-05
  Haspin_kinase  71 nsqeevkdfdevilsqilelckikkilneadlasllnd...........seklssevyqtke..kdkevvlKviplevledvtiskelsl..kelk 151
                    ++q++ +++++ i++q l ++k+ +    ++l+s+ +            ++++++ v+ +++  + +  ++Kv+     + +  +k +     e +
     CCD25484.1  19 QQQHPHTQHEQQIQQQHLVNSKLPQ----KSLESKGKYtlqdfqimrtlGTGSFGRVHLVRSvhNGRYYAIKVLKK---HQIVRMKQIEHtnDERR 107
                    4555558888888888888888833....22222222233335566666777777777776644555555555433...33333333333345666 PP

  Haspin_kinase 152 slklvkgtypglllllqdkvlkekpdfyseqqlflvlllkdkGtdLeev.klkswkqalsifwqivkiLyvaE.tkfeFEHRdLhldniLvdknln 245
                    +lklv+     +l++++   + ++       ++f+v+   ++G+  + + k + + +    f+    +L++    + +   RdL+ +niL+d+n++
     CCD25484.1 108 MLKLVEHP---FLIRMWGTFQDSR-------NIFMVMDYIEGGELFSLLrKSQRFPNPVAKFYAAEVTLALEYlHHHNIIYRDLKPENILLDRNGH 193
                    66666655...5666666555555.......99999999999999988867788888888899887777754314567789*************** PP

  Haspin_kinase 246 vtlidlklsR 255
                    + + d+  ++
     CCD25484.1 194 IKITDFGFAK 203
                    *****98775 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.6      0.25   6.4e+02      38      86 ..      16      65 ..       8      78 .. 0.69
   2 ?   12.4   0.0   3.2e-05     0.082      73     157 ..     110     193 ..      77     201 .. 0.71

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.25
  YrbL-PhoP_reg 38 arrrrkrllkqlqrekkykq.ilrElkeyvqlsklreeidnsplarilGl 86
                   +++++++ + q++++ ++++ +   l ++  +sk ++  + +++ r lG+
     CCD25484.1 16 QQQQQQHPHTQHEQQIQQQHlVNSKLPQKSLESKGKYTLQDFQIMRTLGT 65
                   35566666666666554444134567777777778899999999998886 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 3.2e-05
  YrbL-PhoP_reg  73 eeidnsplarilGlvqTdlGlGlvvekirdadGnvaktLedlvk.keeltaelkeaLdefleelldnhivtndlsakNivvkknse 157
                    + ++  +l r+ G+ q ++ + +v++ i++  G++   L++  +  + +++ ++ ++   le+l + +i+++dl+++Ni++ +n +
     CCD25484.1 110 KLVEHPFLIRMWGTFQDSRNIFMVMDYIEG--GELFSLLRKSQRfPNPVAKFYAAEVTLALEYLHHHNIIYRDLKPENILLDRNGH 193
                    556666677777777777777777777776..55666666666523445556778888889********************99865 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.8e-05     0.097     153     188 ..     167     200 ..     155     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3.8e-05
  Seadorna_VP7 153 dLmdfhsestnllhGDcnpenlmcDknGylklvDPv 188
                   +L+ +h  ++n+++ D +pen++ D+nG +k+ D +
    CCD25484.1 167 ALEYLH--HHNIIYRDLKPENILLDRNGHIKITDFG 200
                   577778..999*********************9965 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   1.1         5   1.3e+04     146     161 ..      11      26 ..       7      29 .. 0.80
   2 ?   -1.4   0.1      0.57   1.5e+03       8      37 ..      78     107 ..      71     123 .. 0.58
   3 ?   10.3   0.0   0.00015      0.39      82     151 ..     131     201 ..     123     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 5
                 E--GTTEEETTSTTHH CS
        RIO1 146 iIDvsQaveldhpnal 161
                  ID  Q  +++hp+ +
  CCD25484.1  11 GIDNQQQQQQQHPHTQ 26 
                 5899999999999875 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.57
                 TTTEEEEEEEE-S---SS-HHHHCTTTSTT CS
        RIO1   8 edgkevaiKiyktstteFkkrkkyvsgekr 37 
                 ++g+ +aiK+ k +  +  k  +++++e+r
  CCD25484.1  78 HNGRYYAIKVLKKHQIVRMKQIEHTNDERR 107
                 466778888776544443333333333333 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00015
                 EEEEE--EETTEEGGBHHHCG-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTT CS
        RIO1  82 vlvmefigedgvaapklkdvee.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQ 151
                  +vm++i+  g     l++ ++  +  ++ y+  +      +++++++  DL   N+l+d++ ++ i D++ 
  CCD25484.1 131 FMVMDYIE-GGELFSLLRKSQRfPNPVAKFYAAEVTLALEYLHHHNIIYRDLKPENILLDRNgHIKITDFGF 201
                 58******.5555566677775688899999998888888899******************99999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 2455.62
//
Query:       CCD25485.1  [L=584]
Description: hypothetical protein NDAI_0F01660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-35  121.6   2.1    1.9e-35  121.6   2.1    3.6  3  AFT       Transcription factor AFT


Domain annotation for each model (and alignments):
>> AFT  Transcription factor AFT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   3.7      0.32   5.8e+03      41      77 ..      56      91 ..      44     106 .. 0.38
   2 !  121.6   2.1   1.1e-39   1.9e-35       1     111 []     127     224 ..     127     224 .. 0.85
   3 ?   -1.8   0.9      0.23   4.1e+03      62      68 ..     319     325 ..     289     364 .. 0.50

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.32
                XXXXXXX........................XXXXXX CS
         AFT 41 kkrkasekskeeekaedestvseeetsskkkkkkrav 77
                +++++++ ++++e++ ++ +++ ++  +  kkkk++ 
  CCD25485.1 56 NNSNSNSVNGNKEANVND-NTTAKNIVQLPKKKKKTY 91
                222222222222222222.222222222222333322 PP

  == domain 2  score: 121.6 bits;  conditional E-value: 1.1e-39
                 -SSGGGHHHHHHHHHGGGT--EEEEEEETTEEEEEE---XXXXXXXX........................XXXXXXXXXX----EEEEEEETTTTEEE CS
         AFT   1 fkdksdikpWLqkifypqGieiviersDslkivfkCkaakkkrkasekskeeekaedestvseeetsskkkkkkravsrynsCPfrvratyslkrkkWs 99 
                 f+dks+ikpWLqkif+ qGi+iviersDs k++fkCk++  kr+ +++              +++++  ++   ++   ++sCPfr+rat+slk kkW+
  CCD25485.1 127 FNDKSEIKPWLQKIFFLQGIDIVIERSDSGKVIFKCKSQTPKRRYAKS-------------LNHNATAATTTTATTPLSSSSCPFRIRATFSLKLKKWN 212
                 99*************************************999998773.............122333334444455556789***************** PP

                 EEEEE---SS-- CS
         AFT 100 ivvvnnehshel 111
                 ivvvnn+hshel
  CCD25485.1 213 IVVVNNSHSHEL 224
                 **********97 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.23
                 ....... CS
         AFT  62 seeetss 68 
                 ++++++ 
  CCD25485.1 319 KNKNKKL 325
                 1111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1965  (0.109599); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4129.64
//
Query:       CCD25486.1  [L=638]
Description: hypothetical protein NDAI_0F01670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.42
# Mc/sec: 4546.06
//
Query:       CCD25487.1  [L=112]
Description: hypothetical protein NDAI_0F01680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.062   13.0   0.0       0.07   12.8   0.0    1.1  1  NRIP1_repr_1  Nuclear receptor-interacting protein 1 repressi


Domain annotation for each model (and alignments):
>> NRIP1_repr_1  Nuclear receptor-interacting protein 1 repression 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.9e-06      0.07      92     121 ..      83     112 .]      64     112 .] 0.91

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3.9e-06
  NRIP1_repr_1  92 agavdsspkgkqestLLAsLLqsFssRLqs 121
                   +g +++++++k+e  LLAsLL+ F   Lqs
    CCD25487.1  83 HGSIQGAGQQKEEGGLLASLLKLFCLCLQS 112
                   6899********************999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       191  (0.0106531); expected 358.6 (0.02)
Passed bias filter:                      159  (0.00886831); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 904.77
//
Query:       CCD25488.1  [L=304]
Description: hypothetical protein NDAI_0F01690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-29  102.9   0.3      2e-14   54.0   0.1    2.3  2  TLD        TLD


Domain annotation for each model (and alignments):
>> TLD  TLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   1.6e-16   2.9e-12       1      64 [.     101     174 ..     101     197 .. 0.83
   2 !   54.0   0.1   1.1e-18     2e-14      66     139 .]     232     304 .]     201     304 .] 0.82

  Alignments for each domain:
  == domain 1  score: 47.0 bits;  conditional E-value: 1.6e-16
         TLD   1 llyssskdgsslstllekie.......nkgptlllikdekkyifGaflsqpw.kssnkkfygdsesflfsl..s 64 
                 llys +++g sl++l+++i+       ++ + +++i+d+k+ ifGa++++p+  ++++++ g++e+fl++l   
  CCD25488.1 101 LLYSLEQHGASLHSLYKNIQpdinesnRRVGYVIIIQDRKNGIFGAYSNEPFrPNEHRRYSGNGECFLWKLekV 174
                 79*********************9985559999*******************5345569************543 PP

  == domain 2  score: 54.0 bits;  conditional E-value: 1.1e-18
         TLD  66 kfkvykstgknkaylntssdglgfGggqpkfsLwidsslekgtsrhsetfengllsgaseerfkikdiEVWglg 139
                 +f+ y  tg n++ ++++s+++++G g+++++Lwid+ l +g+s+++ t++n++ls ++ ++f i  +EVW++g
  CCD25488.1 232 QFRGYPFTGLNEFAVYCTSKFISMGAGEGHYGLWIDDGLLNGVSNPTLTYGNEILS-REGNKFSILGLEVWRVG 304
                 4555666*************************************************.69************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1323  (0.0737911); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2309.98
//
Query:       CCD25489.1  [L=921]
Description: hypothetical protein NDAI_0F01700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   9.7e-111  370.9  16.2   1.3e-110  370.5  16.2    1.1  1  Adaptin_N        Adaptin N terminal region
    1.1e-11   45.1   4.4    2.3e-11   44.0   0.3    2.8  2  Cnd1             non-SMC mitotic condensation complex subunit
    0.00055   20.3   0.0      0.039   14.3   0.0    3.4  3  HEAT_2           HEAT repeats
      0.001   19.2   1.4        5.3    7.6   0.0    4.9  5  HEAT             HEAT repeat
     0.0022   17.3   1.1      0.056   12.6   0.1    3.0  3  Cnd3             Nuclear condensing complex subunits, C-term 
     0.0031   17.7   0.4       0.55   10.4   0.1    3.4  3  RTP1_C1          Required for nuclear transport of RNA pol II
  ------ inclusion threshold ------
      0.036   14.1   1.7        1.2    9.2   0.3    2.8  2  DUF1160          Protein of unknown function (DUF1160)
       0.15   12.1   1.4         11    6.1   0.1    3.2  3  Med31            SOH1
        1.1    9.3   7.7        2.5    8.1   7.7    1.5  1  Peptidase_S49_N  Peptidase family S49 N-terminal


Domain annotation for each model (and alignments):
>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  370.5  16.2  6.6e-114  1.3e-110       8     522 ..      51     612 ..      45     614 .. 0.92

  Alignments for each domain:
  == domain 1  score: 370.5 bits;  conditional E-value: 6.6e-114
                 HHHHHCCSSS.-SCHHHHHHHHHHHHHHHCT---GHHHHHHHCCCCSS-CHHHHHHHHHHHHHCTTSCCHHCCCCHHHHHHCC.....SSSHHHHHHHH CS
   Adaptin_N   8 elaeilnsnk.dddekkkeavkkliylialGedvsflffevvklvaskdfelKrlvYlylellaeesedlalLvtnslqkDlk.....dpnqlirglAL 100
                  l e++n+ + +d   k++a+ kl+yl ++G d+s+++f+v+++++s+++++Kr++Yl++++++++++d+++L+tn l+kDlk     +++ + +g+AL
  CCD25489.1  51 VLTECRNEANsPDMTLKTNAILKLTYLEMYGFDMSWCNFHVLEVMSSNKLQQKRVGYLAASQSFYKDKDILMLATNLLKKDLKysgsnNSDVIKVGIAL 149
                 56778888777799*********************************************************************9999899999****** PP

                 HHHCCC--CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHCTT-SSHHHHHHHHHHHHHH.HCCCCCCCHHHHHHHCCHH CS
   Adaptin_N 101 rvLssirvpelaedlapaikkllkdrspyvrkkAalailklykkdpdllrkqlveeikellsdkdpgvvlaAvalleei.kkndrlllkllpklvrrLc 198
                 ++Ls+i +p+la d+a++++++l++++py+rkkA++a++k++ ++p++lr++ ++++ ++l+d+d++vv+a+v++++e+ kkn++ +++l p l+++L 
  CCD25489.1 150 NGLSTIVTPSLAADIADDLFSMLNSSNPYIRKKAITALFKVFLQYPEALRDN-FDKFASKLEDDDTSVVSATVSVICELsKKNPKPFIQLSPILYEILI 247
                 ***************************************************9.********************************************98 PP

                 HHHHCS-HHHHHHHHHHHCC---SSHHHH..HHHHHHHCGGCG.CSSCHHHHHHHHHCC....HCCCCSTHHHCCHHCHHHHHHSSCCTCHHHHHCHHH CS
   Adaptin_N 199 nllteldpwlqvkiiklltrlarqepeerskkellesllnllq.ssnnaVlletvnliv....elapknelivlavnaLvrllsskdenlryvaLrtll 292
                    ++ ++w++++++kl+t+l+++ep++r k  ll+++l+l++ + +++V++e++n+iv      +++ e+++ +  +L+++++s+d+nlry+++ + +
  CCD25489.1 248 ---NIDNNWIIIRLLKLFTNLSQVEPKLRPK--LLPKILELMEvTMATSVIYESINCIVkgcmLQDDDHETAMFCLDKLHSFCDSQDPNLRYISCCSSS 341
                 ...99************************55..**************************8886336666689***********************9988 PP

                 HHHHHXXTTTT.TTTCCCCSXXTTSXHHHHHHHHHHHCCCXXTTTHHH....HHHHHHHH.........TTSSXXHH..............HHHHHHHH CS
   Adaptin_N 293 kivkkepkavq.hldlkifllktdddvsirlkaldlllklvdesNvke....ivkeLkky.........vkevaded..............fksklvka 363
                   ++ ++++++  ++l+++ll  d dvsir+ka++ll ++v+++N ++    +++++ ++                +              +k+klvk+
  CCD25489.1 342 IKLEINTSFISqFDKLIMRLLL-DMDVSIRSKAIELLDGIVSQENTERnynyLMRQFINEetiqtannsF------SysdrqgisiiipesYKQKLVKT 433
                 8888888****9**********.************************97777777777777755544441......034444777777777******** PP

                 HHHHHHHS....CCHHHHHHHHHHHHHTT....XXHHHHHHHHHHHHHHHHHSTTTSTTCHHHHCCTCCG....XXSHHHHHHHHHHHHHTTTTXTT.. CS
   Adaptin_N 364 Igrlaekf....atdaewvldvllellsl....sgesvkdeivevirdliqkvpelheeiiekLaellek....ieseearaaaiWllGeygelvsnte 450
                 I++l++        d+ w+  vl +l ++    s+e ++ ei  ++r++++kvp+l+e + +++++ +++    +    +++ + W++Ge+++ + n  
  CCD25489.1 434 IIQLCSMEnysnIIDFGWFTMVLSDLATIsidlSNEDLGVEIGRQFRNIMVKVPSLRELSMRTIINITSNedirLGLSSILKDCFWCIGEFSNFIAN-- 530
                 *****866668899************988777799999**********************************9999999******************.. PP

                 .HHHHHHCTTTTTTTSXHHHHHHHHHHHHHHHHCXGCC.THX...........HHHHHHHHHHHXXSHHHHHHHHHHHHHHCC CS
   Adaptin_N 451 sasdllrslaekfvlesekvklqiltalvKlyltspdketqe...........kliqlvlslatssdlevrdRaveylqllss 522
                     l++++++++++ +  v+  i+ al+K   t  ++et++           +li++++s ++s  +e+++R+ve l++l++
  CCD25489.1 531 -GDTLIQLILKNIYSYPPDVQQIIIPALLKILGTWCQNETNPidvrdvklilkQLIEYFESSSYSRYFELQERSVEALEFLKL 612
                 .*****************************99888866666699999999999***************************986 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.3   1.1e-14   2.3e-11       6     146 ..     148     285 ..     146     302 .. 0.83
   2 ?    1.4   0.4      0.15     3e+02      49      97 ..     346     393 ..     312     448 .. 0.68

  Alignments for each domain:
  == domain 1  score: 44.0 bits;  conditional E-value: 1.1e-14
        Cnd1   6 airtlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiiskl 104
                 a+  l++i  p+l   + ++L + L+ ++py+Rk a+ ++ k++l+     ++ ++++a+ leD++++Vv+ ++++++e+s+k+++++++l p ++  l
  CCD25489.1 148 ALNGLSTIVTPSLAADIADDLFSMLNSSNPYIRKKAITALFKVFLQYPEALRDNFDKFASKLEDDDTSVVSATVSVICELSKKNPKPFIQLSPILYEIL 246
                 7888999***************************************99999**************************************9977555555 PP

        Cnd1 105 sdalnecsewgqitilefLlsyipkdkqeaeslveklcprlq 146
                     n  ++w  i  l++ ++  + + +   +l+ k+ + ++
  CCD25489.1 247 I---NIDNNWIIIRLLKLFTNLSQVEPKLRPKLLPKILELME 285
                 5...45678888888888887777777766666666666555 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.15
        Cnd1  49 ilndmvkekgflselaklleDenprVvanalaalteisek.senaiynll 97 
                 i+  ++ + +  + + +ll D + ++++ a+ +l  i ++ +++  yn l
  CCD25489.1 346 INTSFISQFD--KLIMRLLLDMDVSIRSKAIELLDGIVSQeNTERNYNYL 393
                 4444444333..44567889999999999999999998884333344432 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     2e-05     0.039      21      80 ..     149     218 ..     137     225 .. 0.72
   2 ?   -2.9   0.0       4.6   9.2e+03      33      48 ..     318     333 ..     306     336 .. 0.78
   3 ?    1.1   0.0      0.27   5.4e+02       3      30 ..     356     383 ..     354     393 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 2e-05
      HEAT_2  21 iraLgrignp....ealpaLvellededpavRraaaeaLgai......gdpealpaLkellddddddvvR 80 
                 +  L +i +p    ++ + L+++l++++p++R+ a++aL ++      ++ ++ +  +  l ddd +vv 
  CCD25489.1 149 LNGLSTIVTPslaaDIADDLFSMLNSSNPYIRKKAITALFKVflqypeALRDNFDKFASKLEDDDTSVVS 218
                 555666655544447799*********************7664533333455567777777777777765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 4.6
      HEAT_2  33 lpaLvellededpavR 48 
                 l+ L+++++++dp+ R
  CCD25489.1 318 LDKLHSFCDSQDPNLR 333
                 7889999999999988 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.27
      HEAT_2   3 aLlqalendpdpevrraairaLgrignp 30 
                 +L+ +l  d d  +r +ai+ L  i ++
  CCD25489.1 356 KLIMRLLLDMDVSIRSKAIELLDGIVSQ 383
                 5666677889999999999998876555 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0027       5.3       5      24 ..     168     187 ..     166     190 .. 0.92
   2 ?    2.9   0.0     0.084   1.7e+02       7      29 ..     207     229 ..     203     230 .. 0.88
   3 ?   -2.3   0.0         4   7.9e+03       8      28 ..     305     325 ..     304     328 .. 0.75
   4 ?    3.1   0.0     0.076   1.5e+02       4      29 ..     357     382 ..     356     383 .. 0.90
   5 ?   -3.4   0.0       8.8   1.8e+04      20      28 ..     517     525 ..     517     527 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0027
                 HHHHHT-SSHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaL 24 
                 l ++l++++p +R+ A+ aL
  CCD25489.1 168 LFSMLNSSNPYIRKKAITAL 187
                 678**************998 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.084
                 HHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgalae 29 
                 + l+D++ +V +a++  +++l++
  CCD25489.1 207 SKLEDDDTSVVSATVSVICELSK 229
                 5589***************9987 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4
                 HHT-SSHHHHHHHHHHHHHHH CS
        HEAT   8 llsDpspeVReaAakaLgala 28 
                 +l+D++ e  + ++  L  ++
  CCD25489.1 305 MLQDDDHETAMFCLDKLHSFC 325
                 688888888888888777777 PP

  == domain 4  score: 3.1 bits;  conditional E-value: 0.076
                 HHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   4 lllkllsDpspeVReaAakaLgalae 29 
                 l+++ll D + ++R+ A++ L  +++
  CCD25489.1 357 LIMRLLLDMDVSIRSKAIELLDGIVS 382
                 6899999*************998886 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 8.8
                 HHHHHHHHH CS
        HEAT  20 AakaLgala 28 
                 +++++g+++
  CCD25489.1 517 CFWCIGEFS 525
                 789***996 PP

>> Cnd3  Nuclear condensing complex subunits, C-term domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   2.8e-05     0.056      37     115 ..     137     233 ..     125     337 .. 0.83
   2 ?    1.2   0.1     0.084   1.7e+02      15      74 ..     342     399 ..     334     407 .. 0.82
   3 ?   -1.4   0.0      0.52     1e+03     135     234 ..     548     585 ..     523     610 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.8e-05
                 -SSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH-CGGGGGGHH............................. CS
        Cnd3  37 skeaairelglkcLglfclldkklakenlklflqalskgneelkiialkaifDllllhglevldkekkedsd.eeeees.................e 115
                 s++ ++ + g+   gl  +++ +la +  + ++ +l+++n+ ++  a+ a+f ++l ++  + d+ +k  s+ e++++s                 +
  CCD25489.1 137 SNNSDVIKVGIALNGLSTIVTPSLAADIADDLFSMLNSSNPYIRKKAITALFKVFLQYPEALRDNFDKFASKlEDDDTSvvsatvsvicelskknpK 233
                 67899999999999***********************99********************99999999999998777666777777777776665552 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.084
                 S-TTSCCHHHHHHHHTHHHHHC-SSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
        Cnd3  15 ssleenpsleslleslilpavrskeaairelglkcLglfclldkklakenlklflqalsk 74 
                  +le n s  s +++li + +   + +ir ++++ L   ++++++  + n   +++++ +
  CCD25489.1 342 IKLEINTSFISQFDKLIMRLLLDMDVSIRSKAIELLD--GIVSQENTERNYNYLMRQFIN 399
                 4789999**************************9874..777778888888888888875 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHH-GGGTT-HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHCH--....-SHCHHHHHHHH CS
        Cnd3 135 elqaiaaeglcKLllagiltdselLsrLvllyFnpeteenqrLrQcLsvffpvYafsspknqellaeiflptlrtllnapeespla.eeevspskvleq 232
                 +                                                               +++i++p+l ++l+ +++ + +  +  +++ +l+q
  CCD25489.1 548 D---------------------------------------------------------------VQQIIIPALLKILGTWCQNETNpIDVRDVKLILKQ 583
                 3...............................................................44555555555555555444442222233333344 PP

                 HH CS
        Cnd3 233 lv 234
                 l+
  CCD25489.1 584 LI 585
                 43 PP

>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       5.1     1e+04       3      24 ..      54      75 ..      52      77 .. 0.80
   2 !   10.4   0.1   0.00028      0.55       5      78 ..     169     238 ..     165     286 .. 0.91
   3 ?    3.4   0.0     0.043        86       4      45 ..     358     397 ..     356     441 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 5.1
     RTP1_C1  3 ealkdlqdpllpvrahglvlLr 24
                e+ ++ ++p + ++++++++L+
  CCD25489.1 54 ECRNEANSPDMTLKTNAILKLT 75
                6677889999999999999886 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00028
     RTP1_C1   5 lkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlkl 78 
                 ++ l+++ + +r ++++ L k++ +      + ++  ++ + + L+d+d+ v  + ++++++L ++ p+ +++l
  CCD25489.1 169 FSMLNSSNPYIRKKAITALFKVFLQYP----EALRDNFDKFASKLEDDDTSVVSATVSVICELSKKNPKPFIQL 238
                 6789*********************96....667778999****************************999875 PP

  == domain 3  score: 3.4 bits;  conditional E-value: 0.043
     RTP1_C1   4 alkdlqdpllpvrahglvlLrkliekkskeavldiekilkll 45 
                 +++ l d  + +r++++ lL  +++++++e   + + +++ +
  CCD25489.1 358 IMRLLLDMDVSIRSKAIELLDGIVSQENTE--RNYNYLMRQF 397
                 57789999******************9954..4444444333 PP

>> DUF1160  Protein of unknown function (DUF1160)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.052     1e+02      58      94 ..      90     128 ..      46     135 .. 0.86
   2 ?    9.2   0.3    0.0006       1.2      28      93 ..     343     410 ..     336     417 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.052
     DUF1160  58 eiveavdgikLtkkQidylv..kqvyenekiisilqkfv 94 
                 +++e + + kL +k + yl   + +y+++ i+++  +  
  CCD25489.1  90 HVLEVMSSNKLQQKRVGYLAasQSFYKDKDILMLATNLL 128
                 688999999**********73357999999998877655 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.0006
     DUF1160  28 elerdetfrkklvk.vlkmFiereieve.diyeiveavdgikLtkkQidylvkqvyenekiisilqkf 93 
                 +le + +f +++ k ++++ ++ +++++ + +e+++ + + + t++  +yl++q++++e+i +  ++f
  CCD25489.1 343 KLEINTSFISQFDKlIMRLLLDMDVSIRsKAIELLDGIVSQENTERNYNYLMRQFINEETIQTANNSF 410
                 577889999999774779999999997626789*****999***************999987666655 PP

>> Med31  SOH1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.3   4.6e+03      49      60 ..     188     199 ..     184     202 .. 0.85
   2 ?    3.1   0.0     0.046        92      37      66 ..     580     611 ..     519     619 .. 0.80
   3 ?    6.1   0.1    0.0054        11      13      35 ..     726     748 ..     722     751 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.3
                 CCTT--CHHHHH CS
       Med31  49 YakfltyPqcLk 60 
                 +  fl+yP++L+
  CCD25489.1 188 FKVFLQYPEALR 199
                 6689****9996 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.046
                 HHHGG.GGGSTTCCCTT--CHH.HHHHHHHHS CS
       Med31  37 YLkYL.eywkepeYakfltyPq.cLkaLellq 66 
                  Lk L ey++++ Y+++ +  + +++aLe l+
  CCD25489.1 580 ILKQLiEYFESSSYSRYFELQErSVEALEFLK 611
                 577788************99988999998886 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.0054
                 HHCSHHHHHHTTSSSSSSSTHHH CS
       Med31  13 sLanpaYlshLaqekyledeafi 35 
                  L+np+Yl+ L++ek ++d++++
  CCD25489.1 726 QLSNPYYLNKLKNEKNIHDNDLL 748
                 69***********9998887765 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.7    0.0013       2.5      29      90 ..     850     913 ..     842     919 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0013
  Peptidase_S49_N  29 alaakkkkekgelevtkLneeykelk.eeleealldeeelkaaekkekk.eekeekkaekkkak 90 
                       +  +  +++++le++kL+++++e + ee+ e+++  +++k+++k+++k ++k+++k++kkk +
       CCD25489.1 850 DIDDRVVDDNDTLELEKLRNKFTEASgEEVPEEVVIIKKKKKKNKEHRKsKSKNQEKSRKKKLE 913
                      5556666899************987537788888777777776766554155666666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1652  (0.0921412); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 6307.98
//
Query:       CCD25490.1  [L=588]
Description: hypothetical protein NDAI_0F01710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-11   44.5   1.6    8.3e-05   22.2   0.1    2.3  2  Rad9      Rad9


Domain annotation for each model (and alignments):
>> Rad9  Rad9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1     7e-09   0.00013       3      50 ..      18      76 ..      16     187 .. 0.77
   2 !   22.2   0.1   4.6e-09   8.3e-05     132     246 ..     231     367 ..     211     370 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 7e-09
        Rad9  3 ralqclsrigdelyleisedglelrtvnssrSayalvtlkksfFdky...........e 50
                r+l  ls i++ + + is++ l   ++ns+ ++ + + ++++fF+++           +
  CCD25490.1 18 RILYVLSTIDEVIKITISDKELIAWSINSTDTTLCQIHFSRQFFEEFnfepneivfgvN 76
                89999******************************************555555555550 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 4.6e-09
        Rad9 132 riksrvLsdllehfsssleeitielakervllksyeeeekdn.....kkalstelsideeeFeqyqlaed.................veitlslkefka 208
                   +  +Ls++l++ ++s  e+ +e++++++ ++ ++    ++     ++a+s + +i++ + e+                        +i++ lk+fk+
  CCD25490.1 231 CCDRILLSNILDNATNSITELKLEINPNKLNMTGFTKAIYGKdndllRNAMSVTNTINTLDLEH-----SclftavsgdrkkvqessKSIIFKLKDFKS 324
                 5556689****************************99876663233434444444555555444.....344444778899*****99*********** PP

        Rad9 209 llvfaeslsa.s.....lslafdeaGkPllltikklslleakfi 246
                 +++ ++  ++ +     l+l f ++G P+l+++kk + + ++++
  CCD25490.1 325 FMSISSNSKSlPnnadiLNLWFCRPGDPVLFEMKK-MGVRMELV 367
                 **9987643211223347999*************8.66665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 3980.41
//
Query:       CCD25491.1  [L=474]
Description: hypothetical protein NDAI_0F01720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-37  126.7   0.2    3.8e-17   61.9   0.0    4.2  4  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    0.00024   21.2   0.0    0.00092   19.3   0.0    2.0  1  RRM_7         RNA recognition motif
    0.00038   20.4   0.1      0.027   14.5   0.0    2.7  3  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
     0.0031   17.3   0.0       0.45   10.4   0.0    2.5  2  RRM_occluded  Occluded RNA-recognition motif
     0.0033   17.5   0.0      0.016   15.2   0.0    2.0  2  RRM_3         RNA binding motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.12   4.4e+02       1      33 [.      20      52 ..      20      60 .. 0.85
   2 !   17.2   0.0   9.4e-07    0.0034      28      66 ..      89     125 ..      81     128 .. 0.84
   3 !   41.4   0.0   2.5e-14   9.1e-11       1      70 []     162     233 ..     162     233 .. 0.98
   4 !   61.9   0.0     1e-20   3.8e-17       1      70 []     310     374 ..     310     374 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.12
                EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE CS
       RRM_1  1 lfVgnLppdvteeeLkelFskfGpiksiklvrd 33
                l++gnL+++ +e ++ e+ +  ++ +s++l++ 
  CCD25491.1 20 LWMGNLHSSFDEITIQEMWNFLNRSVSVELIKV 52
                789*********999999999999999988875 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 9.4e-07
                 EEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETT CS
       RRM_1  28 iklvrdetgkskgfafVeFeskedAekAlealngkklgg 66 
                 ++ ++ + +k  +++ VeFes+ +A++Al  lng  l++
  CCD25491.1  89 VDSIK-SEHKQANYCLVEFESQQEAAEALT-LNGLPLPN 125
                 45555.678999******************.***88776 PP

  == domain 3  score: 41.4 bits;  conditional E-value: 2.5e-14
                 EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 lfVgnL++ + e +L  lF+  + ++k+++++++   gks+ f+f+ F++ e+ + A e++ng  ++++ +k
  CCD25491.1 162 LFVGNLSSITREADLLLLFRSrYKSVKTVRMMTEpIPGKSDSFGFICFANCEERRLAAEEMNGICFQDKYIK 233
                 8*******************************************************************9886 PP

  == domain 4  score: 61.9 bits;  conditional E-value: 1e-20
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +fVg+L++dv+e+eL elF++fG+i ++k++       k+++fV+F+ + dA++A++ l+g  ++g++++
  CCD25491.1 310 IFVGGLSTDVSEQELNELFRPFGEIMDVKIPLG-----KKCGFVTFKRRIDAKAAIKGLHGFLVRGCPIR 374
                 8*******************************7.....****************************9986 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.6e-07   0.00092       3      33 ..     309     340 ..     307     366 .. 0.84

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 2.6e-07
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvl.vdwP 33 
                  +FvGGl +D++e+el++ f+ fg+++ v  P
  CCD25491.1 309 TIFVGGLSTDVSEQELNELFRPFGEIMdVKIP 340
                 59**********************97436666 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.028     1e+02      34      53 .]      97     116 ..      60     116 .. 0.79
   2 ?   -2.8   0.0       1.9   6.8e+03      34      45 ..     200     211 ..     189     214 .. 0.76
   3 !   14.5   0.0   7.6e-06     0.027       3      52 ..     309     359 ..     307     360 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.028
  Nup35_RRM_2  34 kevsvmyvkfesekdaekAL 53 
                  k+ ++  v+fes  +a+ AL
   CCD25491.1  97 KQANYCLVEFESQQEAAEAL 116
                  7789999***********98 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.9
  Nup35_RRM_2  34 kevsvmyvkfes 45 
                  k+ s+ +++f++
   CCD25491.1 200 KSDSFGFICFAN 211
                  678999999986 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 7.6e-06
  Nup35_RRM_2   3 wvaVsGydteli.elVlehFasfGeIvkhyvpkevsvmyvkfesekdaekA 52 
                  ++ V G +t+   ++  e F+ fGeI++  +p ++   +v+f+ + da+ A
   CCD25491.1 309 TIFVGGLSTDVSeQELNELFRPFGEIMDVKIPLGKKCGFVTFKRRIDAKAA 359
                  566777777654366667899***********99**************988 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.011        40      37      61 ..      98     121 ..      71     126 .. 0.68
   2 !   10.4   0.0   0.00013      0.45       2      70 ..     308     375 ..     307     383 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.011
  RRM_occluded  37 dheGAivefkdekiagkasLaLdgs 61 
                   + + ++vef++++ a+ a L L+g 
    CCD25491.1  98 QANYCLVEFESQQEAAEA-LTLNGL 121
                   34569***********96.778875 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00013
  RRM_occluded   2 rtisllplsDtvnkariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklrc 70 
                   +ti + +ls  v+++++++l+ +  gei+++ +   +++ +v fk + +a  a+  L+g    g  +r 
    CCD25491.1 308 STIFVGGLSTDVSEQELNELFRPF-GEIMDVKIPLGKKCGFVTFKRRIDAKAAIKGLHGFLVRGCPIRL 375
                   67888899****************.********************998887777789998888877775 PP

>> RRM_3  RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.59   2.1e+03      36      52 ..      98     114 ..      59     118 .. 0.62
   2 !   15.2   0.0   4.6e-06     0.016       5      57 ..     311     363 ..     308     373 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.59
                 TSSEEEEEESSHHHHHH CS
       RRM_3  36 gdkegevrFkedeeakk 52 
                  ++ + v F++++ea +
  CCD25491.1  98 QANYCLVEFESQQEAAE 114
                 33445566666655554 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 4.6e-06
                 EEEE-SSS--HHHHHHHCHCCS-ECEEEE-TTSSEEEEEESSHHHHHHHHHHH CS
       RRM_3   5 klsGlnkelsredikellsklgevayvdyekgdkegevrFkedeeakkaleka 57 
                 ++ Gl+ ++s +++ el++ +ge+  v    g+k g v Fk   +ak+a++ +
  CCD25491.1 311 FVGGLSTDVSEQELNELFRPFGEIMDVKIPLGKKCGFVTFKRRIDAKAAIKGL 363
                 6789*********************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       571  (0.0318478); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.44
# Mc/sec: 3260.87
//
Query:       CCD25492.1  [L=138]
Description: hypothetical protein NDAI_0F01730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.02   14.7   0.0      0.025   14.4   0.0    1.2  1  LydB      LydA-holin antagonist


Domain annotation for each model (and alignments):
>> LydB  LydA-holin antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.4e-06     0.025      41      99 ..      43     101 ..      17     112 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-06
        LydB  41 vpfkyrskfpflrgatvrywirdvqkpttviegeqrclasaeqgensewlyipteymgk 99 
                 +pf       fl g ++ +  r ++    +   e  c+a++e   +  wly   e+mg 
  CCD25492.1  43 MPFSTSGYATFLAGGAITWCSRRIRSTICLSSTEAECIAASEAVLEIMWLYNLLEHMGY 101
                 7888888899****************99*****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       249  (0.0138881); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1037.64
//
Query:       CCD25493.1  [L=313]
Description: hypothetical protein NDAI_0F01740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.8e-53  179.9  22.3    6.9e-53  179.6  22.3    1.1  1  HlyIII    Haemolysin-III related


Domain annotation for each model (and alignments):
>> HlyIII  Haemolysin-III related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.6  22.3   3.9e-57   6.9e-53       1     224 []      76     299 ..      76     299 .. 0.93

  Alignments for each domain:
  == domain 1  score: 179.6 bits;  conditional E-value: 3.9e-57
      HlyIII   1 fslhnEtlniwtHllgailfivlailllslaevken...sklakvvvlvfllgallcllcSalyHtlsihseeklrkffaklDysgIslliagsylpli 96 
                 f +hnE+ n+++Hll+ ++f+   +++l++  ++     s  + +++ +f++ga++cl++S+l+H++++hs  k+ ++ +klDy+gI++li++s+++++
  CCD25493.1  76 FYVHNESGNVYSHLLPGVFFF--FTMVLNKYGITIYsttSIVDYLMIDLFFFGAFCCLILSSLFHCFKSHSL-KVATLGNKLDYLGIVILIVTSMISIM 171
                 689*************99994..444444443333334677899****************************.************************** PP

      HlyIII  97 lyalakapkagllylslilalgvlgiisklvplfsrpearplravlfillgllgvipllhlllvltqlgeaa.elalvllvlggvlylvGavfYalrvP 194
                 ++ ++++p + +++ sl+ ++g ++  ++l + f+++e+rp+ra lf+++gl++++p+l    + ++++e+  +++l++++l+g++y++Ga++Y++r+P
  CCD25493.1 172 YFGFFDNPLFFYFFSSLTFLFGGACATVSLKDHFRSREWRPYRAGLFVAFGLSAILPILA-GTFYYGIEETFiRIQLKWIILEGFFYIFGAFLYGVRFP 269
                 ************************************************************.999999**999*************************** PP

      HlyIII 195 ErlkpgkfdivghsHqiFHvfvvlgalfhy 224
                 E++ pg+fdi+ghsHqiFH++vv++a++h+
  CCD25493.1 270 EKYVPGSFDIWGHSHQIFHILVVVAAFCHL 299
                 *****************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2442.49
//
Query:       CCD25494.1  [L=162]
Description: hypothetical protein NDAI_0F01750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-07   30.2   8.8    5.9e-07   29.8   8.8    1.3  1  DUF2076          Uncharacterized protein conserved in bacteri
     0.0002   21.4   4.1    0.00031   20.8   4.1    1.3  1  CHCH             CHCH domain
  ------ inclusion threshold ------
      0.048   13.7   1.1      0.084   12.9   1.1    1.4  1  CX9C             CHCH-CHCH-like Cx9C, IMS import disulfide re
      0.071   13.1   0.8       0.14   12.1   0.8    1.4  1  Antimicrobial24  Frog antimicrobial peptide


Domain annotation for each model (and alignments):
>> DUF2076  Uncharacterized protein conserved in bacteria (DUF2076)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   8.8   1.3e-10   5.9e-07     108     228 ..      19     133 ..       3     159 .. 0.54

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 1.3e-10
     DUF2076 108 qarpaapagqalgqeeqyaaqpgyaqqqaqpq.ygqpaaapqpggGggFLggAlqtAAGVaGGvllangleslfsgksgeegaasasqsaeeeeiinny 205
                 +++  +p++q+   ++++aa+ +y   q+qp+ y++p+aa ++++G g +g  ++tAAGVa G+ ++ ++ +l+ g+ g+  +a+  q+++++  +  +
  CCD25494.1  19 SRSTGGPTQQTRS-ASTAAAPTNY---QQQPNaYSHPQAAVPTSQGPGLFGQMASTAAGVAVGSSIGHAVGGLLFGGGGSR-TADVDQPQQQD--VTPQ 110
                 2222333333222.2222222233...33444033444444469999*************************877754433.22223333222..2222 PP

     DUF2076 206 yssssladdaedadnasadsfad 228
                 +++s l+++ + + ++ a+sf++
  CCD25494.1 111 ATASTLQQEQGRSCDGAAKSFTK 133
                 32344555555555555544444 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   4.1   6.9e-08   0.00031       1      34 [.     124     157 ..     124     158 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 6.9e-08
                 THHHHHHHHHHHHHCTSSTTTTHHHHHHHHHHHC CS
        CHCH   1 CgeefkeylkClkdnsdefskCrkefeafkeCvk 34 
                 C    k + kCl+dn+ +f  C ++++++k+C++
  CCD25494.1 124 CDGAAKSFTKCLDDNDGNFQICDYYLQQLKACQE 157
                 55567899************************97 PP

>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.1   1.9e-05     0.084       6      41 ..     122     157 ..     121     159 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.9e-05
        CX9C   6 kyCpkefeaYhkCvssnqswpekCkeqkkeLakCik 41 
                 + C    +++ kC+ +n  + + C  + ++L  C +
  CCD25494.1 122 RSCDGAAKSFTKCLDDNDGNFQICDYYLQQLKACQE 157
                 567777899*************************76 PP

>> Antimicrobial24  Frog antimicrobial peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.8   3.2e-05      0.14       4      14 ..      78      88 ..      77      89 .. 0.96

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 3.2e-05
  Antimicrobial24  4 SSIGkALGGLL 14
                     SSIG A GGLL
       CCD25494.1 78 SSIGHAVGGLL 88
                     9*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1225.62
//
Query:       CCD25495.1  [L=276]
Description: hypothetical protein NDAI_0F01760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-22   79.9   0.0    2.4e-22   79.3   0.0    1.2  1  NAD_binding_7   Putative NAD(P)-binding
    9.1e-12   44.4   0.0      2e-11   43.4   0.0    1.5  1  Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
      2e-09   36.7   0.1    3.8e-09   35.8   0.1    1.5  1  Sirohm_synth_M  Sirohaem biosynthesis protein central
  ------ inclusion threshold ------
      0.036   13.3   0.0      0.049   12.8   0.0    1.1  1  Pyr_redox_2     Pyridine nucleotide-disulphide oxidoreductase
       0.12   11.7   0.0       0.23   10.9   0.0    1.5  2  Spermine_synth  Spermine/spermidine synthase domain


Domain annotation for each model (and alignments):
>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0   6.7e-26   2.4e-22       1     104 []       7     153 ..       7     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 79.3 bits;  conditional E-value: 6.7e-26
  NAD_binding_7   1 lfldlkgkkvlvvGgGevAarkvrklleagakvtvvapev...keele...............................elvklaeeelekd.... 58 
                    l++++kgk+vl++GgG+v  ++++kll+ag k+t+v+ ev                                       +++k++++e++++    
     CCD25495.1   7 LAHQIKGKEVLIIGGGKVCITRLKKLLPAGSKITLVSTEVdpkI---LnndyfpsnlmnkegntkreytnmnwdkkektQIFKIIRTEYKEEylti 99 
                    79*************************************95440...2455666677777777777776666666666644444444443333443 PP

  NAD_binding_7  59 .....legadlviaatddrelneriaeaaka...rrilvnvadkpelcdfifpa 104
                          +g+ l++++++  e++e+i+ +ak+    ++l+nvadkp+lcdf+f+a
     CCD25495.1 100 ddhdnKNGWNLILVCISSFEISEKIYWKAKEifgSQQLINVADKPSLCDFFFGA 153
                    3333366799*********************999******************97 PP

>> Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   5.5e-15     2e-11       4      64 ..     191     257 ..     189     261 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 5.5e-15
  Sirohm_synth_C   4 lgaAiekvgkLRkkLReiapdq..eegpk....RMkWmskvcdswsleelaeldeedmekLlemyek 64 
                     ++  +ek+ +LR  +Re+++++  e++p+    RM+W+++v+d+++l+ ++++++ ++ +L+e  ++
      CCD25495.1 191 FEVIMEKLANLRFGIRELTTNPdgEDEPQviayRMTWIKTVTDIFGLKYCENINVPKLLELFEKMQH 257
                     556689***********9999876777779********************************65554 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.1   1.1e-12   3.8e-09       2      28 .]     159     185 ..     158     185 .. 0.95

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 1.1e-12
  Sirohm_synth_M   2 GpLQIaiSTnGksPrLAaliRreierl 28 
                     G+LQ+++S+nG sP+L  l+R+ei r+
      CCD25495.1 159 GGLQLMVSSNGISPTLGGLMRDEINRH 185
                     99**********************986 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.4e-05     0.049       2      79 ..      15     100 ..      14     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
                  SEEEE--SHHHHHHHHHHHHHTS-EEEEE..TTHCHHHCSHHHHCHHHHHHHHHHHHH......HHHHCHHHHCCCCHCCTCEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2   2 dvvviGgGpAGlaaaltlaqagakvtlve..legtclnggcllskallgvaedaeias......evvkklnqgielllgeevvkid 79 
                  +v++iGgG   ++  ++l  ag k+tlv+   +  +ln++ ++s+ + + +  +++ +      ++ +++ + i++ ++ee+++id
   CCD25495.1  15 EVLIIGGGKVCITRLKKLLPAGSKITLVSteVDPKILNNDYFPSNLMNKEGNTKREYTnmnwdkKEKTQIFKIIRTEYKEEYLTID 100
                  799*****999999999999********6669999****************99998888888774444455556666666676666 PP

>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.3e-05      0.23       9      55 ..       2      51 ..       1      78 [. 0.74
   2 ?   -3.7   0.0       1.8   6.5e+03      70      89 ..     255     274 ..     250     275 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.3e-05
                    HHHHHCCSS.ST-EEEEESSTTSHHHHHHTTSTT-SEEEEE..ES-HHHH CS
  Spermine_synth  9 ahvplmlhk.npkevLiiGGgDGgvlrevvkhntvekitlv..diDqkvi 55
                    +h+  ++h+ + kevLiiGGg   ++r    ++   kitlv  ++D k++
      CCD25495.1  2 GHSLQLAHQiKGKEVLIIGGGKVCITRLKKLLPAGSKITLVstEVDPKIL 51
                    677777777799*********98777655555666788877556676665 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.8
                     GGCTTEEEEESTCHHHHCTC CS
  Spermine_synth  70 fndarvklvlgdgfkflkay 89 
                     ++++ + l  gd+ +f+++y
      CCD25495.1 255 MQHDDYSLSFGDAQEFITKY 274
                     57788889999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2056.83
//
Query:       CCD25496.1  [L=495]
Description: hypothetical protein NDAI_0F01770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-20   70.8   2.8    0.00011   22.5   0.0    5.3  5  CBS       CBS domain


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00016       2.8       8      35 ..     115     142 ..     107     151 .. 0.88
   2 !   22.5   0.0   6.4e-09   0.00011       2      56 ..     190     248 ..     189     249 .. 0.83
   3 !   19.1   0.1   7.6e-08    0.0014       7      51 ..     284     328 ..     278     331 .. 0.90
   4 !    5.4   0.0    0.0014        26       8      36 ..     365     393 ..     360     400 .. 0.84
   5 !   10.8   0.1   2.8e-05      0.51      40      55 ..     457     472 ..     455     474 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00016
                 SCEEEETTSBHHHHHHHHHHHTSSEEEE CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPV 35 
                 +++++p + ++eea++++++++++++PV
  CCD25496.1 115 KLIFIPGSLSVEEAFNKLIKNHLNSIPV 142
                 578999***********99999*****9 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 6.4e-09
                 HHH....SBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTT.BEEEEEEHHHHHHHHH CS
         CBS   2 gdi....mtrdvvtvppdttleealelmrekgvsrlPVVdedg.klvGivtlrDllrall 56 
                 g+i    +  ++  +p++++l+ ++ ++  +gv+r+ V++ +  k+ G+++++ l+++l 
  CCD25496.1 190 GEIvkltPKNPFYKLPETENLSTVMGIL-GSGVHRVAVTNVEMtKVKGVLSQSRLIKYLW 248
                 55555344447889**************.999*******766689*************97 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 7.6e-08
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDl 51 
                 ++v++++ d++l  al +m  +++s++ V+d++g+l+G ++ +D+
  CCD25496.1 284 SRVISIHGDEPLIMALYKMYIERISSIAVIDNQGNLIGNISVTDV 328
                 4789************9997455*********************8 PP

  == domain 4  score: 5.4 bits;  conditional E-value: 0.0014
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEE CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVV 36 
                 +++ v+p+++l+  l +++ ++ +rl +V
  CCD25496.1 365 PIFHVYPTSSLARTLAKLVATKSHRLWIV 393
                 7889******99999999888889**999 PP

  == domain 5  score: 10.8 bits;  conditional E-value: 2.8e-05
                 TBEEEEEEHHHHHHHH CS
         CBS  40 gklvGivtlrDllral 55 
                 gkl+G+v+l+D++++ 
  CCD25496.1 457 GKLIGVVSLTDIISLF 472
                 99***********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3721.77
//
Query:       CCD25497.1  [L=1135]
Description: hypothetical protein NDAI_0F01780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-84  280.1   0.1    1.6e-83  279.4   0.1    1.3  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    1.4e-67  227.3   0.0    2.4e-67  226.6   0.0    1.4  1  PYC_OADA         Conserved carboxylase domain
    4.8e-31  107.1   0.0      2e-30  105.1   0.0    2.1  2  Biotin_carb_C    Biotin carboxylase C-terminal domain
    6.4e-27   94.8   0.1    1.5e-26   93.5   0.1    1.6  1  HMGL-like        HMGL-like
    1.3e-26   93.3   0.0    2.9e-26   92.1   0.0    1.6  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    1.3e-19   69.8   4.3    1.3e-19   69.8   4.3    2.1  2  Biotin_lipoyl    Biotin-requiring enzyme
    1.1e-08   34.8   2.9    0.00075   19.3   0.5    2.7  2  Biotin_lipoyl_2  Biotin-lipoyl like
    6.1e-08   32.4   0.0    1.3e-07   31.4   0.0    1.4  1  ATP-grasp        ATP-grasp domain
    2.2e-07   30.6   0.0    4.4e-07   29.6   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    7.7e-07   29.3   0.0    2.1e-06   27.9   0.0    1.8  1  ATP-grasp_3      ATP-grasp domain
    3.6e-05   23.1   0.3      0.014   14.6   0.1    2.5  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
    0.00012   22.7   1.6       0.89   10.3   0.1    3.3  2  HlyD_3           HlyD family secretion protein
     0.0017   17.6   0.0     0.0041   16.4   0.0    1.6  1  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
     0.0044   16.5   0.1     0.0083   15.6   0.1    1.4  1  NQRA             Na(+)-translocating NADH-quinone reductase s
  ------ inclusion threshold ------
      0.017   14.7   0.0      0.034   13.7   0.0    1.6  1  ATP-grasp_4      ATP-grasp domain
      0.033   14.1   1.7       0.13   12.2   1.0    2.4  2  RnfC_N           RnfC Barrel sandwich hybrid domain
      0.078   12.9   0.8       0.22   11.4   0.8    1.7  1  GCV_H            Glycine cleavage H-protein


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.4   0.1   1.5e-86   1.6e-83       1     210 [.      93     301 ..      93     302 .. 0.99

  Alignments for each domain:
  == domain 1  score: 279.4 bits;  conditional E-value: 1.5e-86
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  Dk+sa+++++++nvp+vp++++p++t +ea ++++++gyPviikaafg+GG+Gmrv+r+ +++a+++++a++ea +afgn +++ve++l++pk+iEv+
   CCD25497.1  93 DKVSARNLAERANVPTVPGTPGPIKTSKEAEEFVAQYGYPVIIKAAFGGGGRGMRVVREGDDIADAFQRASSEALTAFGNGTCFVERFLNKPKHIEVQ 190
                  9************************************************************************************************* PP

                  EEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HH CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlv 196
                  +l+D++gnv++++er++s+q+r+qkv+evAP++tL +e r+ + ++avk+++e+g+++agt efl+d  ++++y+iE+N+R++ve++++e++TG+d+v
   CCD25497.1 191 LLADNYGNVVHLFERDCSVQRRHQKVVEVAPAKTLPREVRNSILTDAVKLAKECGYRNAGTAEFLVDD-QNRHYFIEINPRIQVEHTITEEITGIDIV 287
                  *******************************************************************7.9**************************** PP

                  HHHHHHHTT--GCG CS
  CPSase_L_D2 197 keaakialgekLee 210
                  +++++ia+g++L++
   CCD25497.1 288 AAQIQIAAGASLSQ 301
                  ***********986 PP

>> PYC_OADA  Conserved carboxylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.6   0.0   2.2e-70   2.4e-67       1     198 []     809    1009 ..     809    1009 .. 0.97

  Alignments for each domain:
  == domain 1  score: 226.6 bits;  conditional E-value: 2.2e-70
                  HHCCT--CCHHHHHHHHHHHTT-GGGHHHHHHHHHHHHHHTT----STTHHHHHHHHHHHHHHH........TS.TTSS--HHHHHHHTTSS---SS CS
    PYC_OADA    1 VykheiPGGqltnlkeqakeqglldkfeevlkeyaevnkllGdivkVTPsSkvvgdlAvfnvlnklteedvleegrykdipdsvvdllkGelGkppg 97  
                  Vy+heiPGGqltnl +qa+++gl++++ e +++y+++n llGdivkVTP+SkvvgdlA+f+v+nklt++dv+  ++ +d+pdsv+d+++G +G+p+g
  CCD25497.1  809 VYQHEIPGGQLTNLLFQAQQLGLGEQWAETKRAYRDANYLLGDIVKVTPTSKVVGDLAQFMVTNKLTPDDVKRLANSLDFPDSVMDFFEGLIGQPYG 905 
                  9************************************************************************************************ PP

                  ---HHHHHHHHT..-----S-GGGG---.-HHHHHHHTTTTSS..SHHHHHHHHHSHHHHHHHHHHHHHHHHHH..CTTTS......-SEEEEEETT CS
    PYC_OADA   98 gfpeelvkkvlk.geepitsrpadslepedleklrkeleekak..teedvlsyalypkvaekflkfreeygdvsvlptkvffeglkvgeeveveveg 191 
                  gfpe+l++ +l+ +++++t+rp+ +l+p +l+k++++l+ +++  +e dv sy +ypkv+e+f k +e+ygd+svlpt+ f++ l ++eevev++e+
  CCD25497.1  906 GFPEPLRSDILRnKRRKLTCRPGLELAPFELSKIKEDLQTRFGdiDECDVASYNMYPKVYEDFQKIKETYGDLSVLPTRSFLAPLVIDEEVEVTIEQ 1002
                  ************545559***********************977799************************************************** PP

                  EEEE.EE CS
    PYC_OADA  192 gkylivk 198 
                  gk li+k
  CCD25497.1 1003 GKNLIIK 1009
                  ***9986 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.0   1.9e-33     2e-30       1     107 [.     317     424 ..     317     425 .. 0.97
   2 ?   -2.1   0.0         4   4.2e+03      11      56 ..    1060    1111 ..    1056    1122 .. 0.63

  Alignments for each domain:
  == domain 1  score: 105.1 bits;  conditional E-value: 1.9e-33
                    EEEEESEETTTTTEE--CE-SEEE---STTEEEEE-.--TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-HH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelpegpgvRvdsg.veegsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflrailedee 95 
                    ++Ri++Edp+knf+p++G+++ ++  +g+gvR+d g +++g+ +sp+yDs+l K  + g+t e + +++ raL e+ri+Gvktni+fl ++l ++ 
     CCD25497.1 317 QCRITTEDPSKNFQPDTGRLEVYRSAGGNGVRLDGGnAYAGAVISPHYDSMLVKCSCSGSTYEIVRRKMIRALIEFRIRGVKTNIPFLLTLLTHPV 412
                    79********************************97367********************************************************* PP

                    HHHT---TTTCC CS
  Biotin_carb_C  96 fakgeldtkfle 107
                    f+ g++ t+f++
     CCD25497.1 413 FIGGDYWTTFID 424
                    **********98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 4
                     TTTEE--CE-SEEE--......-STTEEEEE---TT-EE-TTS-SEEEEEEE CS
  Biotin_carb_C   11 knflpssGkvtelelp......egpgvRvdsgveegsevspyyDsllaKliv 56  
                     +  +p +G + e+++       +g+ v v s+++ +  +s+  D  +  + +
     CCD25497.1 1060 QIGAPMAGVIVEVKVHkgslvkKGQAVAVLSAMKMEMVISSPADGQVKEVLI 1111
                     5557888888888887556666666666666666666666666666665544 PP

>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.1   1.5e-29   1.5e-26       4     262 ..     517     786 ..     515     787 .. 0.84

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 1.5e-29
                 EEE-TTTHHHHTS.SS---HHHHHHHHHHHHHH..T-SEE--........TSGGGT.THHHHHHHS---TT-B...........--EE-SSHHHHHHHH CS
   HMGL-like   4 ivdttLRDGeqal.kaalsveeklaiakaLdea..gvdeiEv........gfpaaseddfevvraiakavkka......r...ilalvrarekdikaav 82 
                 ++dtt RD++q+l ++++++ +  aia   ++a  g  ++E+         ++++ ed+++++r++ k v++       r    +a+  + ++ i+ +v
  CCD25497.1 517 LMDTTWRDAHQSLlATRVRTYDLAAIAPTTAHAlsGAFALECwggatfdvAMRFLHEDPWDRLRTLRKLVPNIpfqmllRganGVAYSSLPDNAIDHFV 615
                 68**********999*********99865554433777788888887777*******************9998666665255689999999******** PP

                 H....TT-SEEEEEEES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-E....TTT-...BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---H CS
   HMGL-like  83 ealkgagakrvhvfiatselhlkaklkkdreevakkaeeavkaarslgkd....vels...ledasrtdleflaevveaaeeaGatriniaDtvGvltP 174
                 +++k +g+++++vf+a ++              +++ +  v a++++g      v++s   l   ++ +l++ +ev+++++++G   + i+D+ G ++P
  CCD25497.1 616 KQAKDNGVDIFRVFDALND--------------LDQLKVGVDAVKKAGGVveatVCYSgdmLAKGKKYNLDYYLEVTDKIVQMGTHFLGIKDMAGTMKP 700
                 *******************..............33333334444444333222333331113344678999**************************** PP

                 HHHHHHHHHHHHHS-.GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT-B----HHHHHHHHH CS
   HMGL-like 175 neaaelisalkervkdkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealgvdtgldlqklrsiaa 262
                  +a+ li  ++++++  ++++vH+H+  G+Av  + +A+  Gad+vd+++n++++ +  +++ +l a l + +++tg+++q++r++ a
  CCD25497.1 701 AAAKLLIGSIRAKYP-DLPIHVHTHDSAGTAVSSMTVAALSGADVVDVAINSMSGLTAQPSINALLASLDG-EINTGINVQHVRDLDA 786
                 ***************.9*************************************************99987.59*******9998765 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   2.8e-29   2.9e-26      26     110 .]       1      88 [.       1      88 [. 0.93

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 2.8e-29
                    -EEEEEEEGGGTTSHHHHHSSEEEEEESST...TCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHHHHTT-EESSS-HHHH CS
  Biotin_carb_N  26 ietvavyseedanslhvreadeavelgpas...asesYlniekivkaakesgadavhpGyGflsEnaefaeaveeagivfiGPsaeal 110
                    ++tva+ys+ed+ s+h  +ade++ +g++    +  +Yl i++i+++ak++g+d +hpGyGflsEn+efae+v+++gi++iGP+++++
     CCD25497.1   1 MRTVAIYSHEDRLSTHRLKADESYVIGEQGeftPVGAYLAIDEIINIAKKHGVDFIHPGYGFLSENSEFAEKVAANGITWIGPPSSVI 88 
                    589***********************9664222679************************************************9886 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       4.3   4.6e+03      40      67 ..     639     666 ..     627     668 .. 0.71
   2 !   69.8   4.3   1.2e-22   1.3e-19       2      73 .]    1060    1126 ..    1059    1126 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 4.3
                    TEEEEEEBSSSEEEEEESSTTTEEE-TT CS
  Biotin_lipoyl  40 KmemeieapkaGvvkeilvkeGdtvevg 67 
                    K+ ++   ++ Gvv+  ++ +Gd++  g
     CCD25497.1 639 KVGVDAVKKAGGVVEATVCYSGDMLAKG 666
                    5555666667788888888888888777 PP

  == domain 2  score: 69.8 bits;  conditional E-value: 1.2e-22
                     EEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl    2 eiksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73  
                     +i +Pm+G++ve     v+v++G+ Vk+gq +a+++amKmem i++p++G+vke+l+++G++ve++dll+++
     CCD25497.1 1060 QIGAPMAGVIVE-----VKVHKGSLVKKGQAVAVLSAMKMEMVISSPADGQVKEVLINSGENVEASDLLVVL 1126
                     799*********.....****************************************************986 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.5   7.1e-07   0.00075       4      34 ..    1060    1090 ..    1057    1096 .. 0.90
   2 !   15.0   0.1   1.5e-05     0.016       5      36 ..    1098    1129 ..    1095    1134 .. 0.93

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 7.1e-07
  Biotin_lipoyl_2    4 sIaapvsGrVaqlnVkdGqrVkaGdvLaelD 34  
                       +I ap +G+++++ V+ G  Vk+G+  a+l 
       CCD25497.1 1060 QIGAPMAGVIVEVKVHKGSLVKKGQAVAVLS 1090
                       8999*********************999886 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.5e-05
  Biotin_lipoyl_2    5 IaapvsGrVaqlnVkdGqrVkaGdvLaelDsr 36  
                       I++p +G+V+++++  G  V+a d+L++l+++
       CCD25497.1 1098 ISSPADGQVKEVLINSGENVEASDLLVVLEDT 1129
                       9***************************9986 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.2e-10   1.3e-07      14     159 ..     116     270 ..     103     274 .. 0.90

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.2e-10
                 ECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-.EEE--EEEEEEETT CS
   ATP-grasp  14 veskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGe.tafypvvetvqedg 103
                 +++++e+ee++++ g+pv++K +  g  G+G  vvr+ +d+ +a++ +        +++++ vE f +  k + v    +  G+ ++ ++    vq++ 
  CCD25497.1 116 IKTSKEAEEFVAQYGYPVIIK-AAFGGGGRGMRVVREGDDIADAFQRAssealtafGNGTCFVERFLNKPKHIEVQLLADNYGNvVHLFERDCSVQRRH 213
                 78899****************.788889****************99999999***9*************999999999999998567899999999999 PP

                 EEEEEEECEE-.SCHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS CS
   ATP-grasp 104 ilrlsvapaev.sekaqkkaeeiakkiveeLggvGvfavElFvledgellvnElapR 159
                   ++ vapa+  +++  +++ + a k+++e g+    + E+ v ++++ ++ E+ pR
  CCD25497.1 214 QKVVEVAPAKTlPREVRNSILTDAVKLAKECGYRNAGTAEFLVDDQNRHYFIEINPR 270
                 9999999997616668899999999*********999999888877779999*9999 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   4.2e-10   4.4e-07      26     174 ..     120     269 ..     109     270 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4.2e-10
                      HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT......-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS- CS
  Dala_Dala_lig_C  26 ellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky......dekvlvEeai.egreievavlgneklevsevgeivvkkgfyd 112
                      +  e+ +++ gypv++K+a  G   G+  v+  +++++a+++a +       + + +vE+++ + + iev +l ++  +v ++ e+  +    +
       CCD25497.1 120 KEAEEFVAQYGYPVIIKAAFGGGGRGMRVVREGDDIADAFQRASSEaltafgNGTCFVERFLnKPKHIEVQLLADNYGNVVHLFERDCSV--QR 211
                      5678999********************************999887622223356789*****999*********9999999888877654..34 PP

                      HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 113 yeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                       ++k     +++    +l++ev+++i + a+k  k  + r  +   f+++++++ ++ E+N+
       CCD25497.1 212 RHQKV----VEVAPAKTLPREVRNSILTDAVKLAKECGYRNAGTAEFLVDDQNRHYFIEINP 269
                      55555....677777889*******************************************6 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0     2e-09   2.1e-06      10     159 ..      99     272 ..      91     274 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 2e-09
                  HHTTT.S---..............-EESS--.SSSEEEEESS-------B--SS--TTE...................EEEE--.-SEEEEEEEEE.S CS
  ATP-grasp_3  10 kLkeagvkvP..........tkleaeeleee.ekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefi.eGkplSvsllsdg 83 
                   L e+ ++vP          t  eaee+  +  +++++K + G+gg ++rvv+e+++   a++  +             v +f+ + k++ v+ll+d+
   CCD25497.1  99 NLAER-ANVPtvpgtpgpikTSKEAEEFVAQyGYPVIIKAAFGGGGRGMRVVREGDDIADAFQRASsealtafgngtcFVERFLnKPKHIEVQLLADN 195
                  44444.455555577777775555555554459**********************999888887778899********8889983579*********9 PP

                  SSEEEEEEEEEE.EET....TEEEEEEES----HHHHHHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEESS-- CS
  ATP-grasp_3  84 ekvlvlavnrql.iekaekefvyaGnvtpietelkeevvelaeevvekleglaGyvGvDlvlkd.eepyviEvNPRlt 159
                    ++v  + r   ++++++++v +      + e ++++ + a ++ ++  g +     ++++ d +  y+iE+NPR++
   CCD25497.1 196 YGNVVHLFERDCsVQRRHQKVVEVAPAKTLPREVRNSILTDAVKLAKEC-GYRNAGTAEFLVDDqNRHYFIEINPRIQ 272
                  9988888887761455445455555555555566888888888888888.888888899***99999*********98 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.4e-05     0.014      78     140 ..    1028    1090 ..     999    1094 .. 0.76
   2 !    6.6   0.0    0.0038         4     106     143 ..    1093    1130 ..    1089    1131 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23   78 lleaarerLrllgvseeqiaelektg.kvqktvtvkapisGvVteknvreGqyvqpgdtlftia 140 
                  +l+   +++r+++  +++i++++k + + +  +++ ap++Gv++e +v +G+ v++g++++ ++
  CCD25497.1 1028 ELNGEMRKIRVVDR-SQKIESIAKPKaDGHDPFQIGAPMAGVIVEVKVHKGSLVKKGQAVAVLS 1090
                  56666677777774.477888877551567889*************************998766 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0038
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  106 qktvtvkapisGvVteknvreGqyvqpgdtlftiadls 143 
                  + ++ +++p++G V e  ++ G+ v+++d l+ + d s
  CCD25497.1 1093 KMEMVISSPADGQVKEVLINSGENVEASDLLVVLEDTS 1130
                  5678899**********************999998876 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.1   0.00084      0.89       2      31 ..    1061    1090 ..    1060    1095 .. 0.91
   2 !   10.0   0.1    0.0011       1.1       2      33 ..    1098    1129 ..    1097    1132 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00084
      HlyD_3    2 lrApvdGvvvelnveegevvqagdelleii 31  
                  + Ap +Gv+ve++v +g+ v +g++++ + 
  CCD25497.1 1061 IGAPMAGVIVEVKVHKGSLVKKGQAVAVLS 1090
                  669***********************9875 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.0011
      HlyD_3    2 lrApvdGvvvelnveegevvqagdelleiipp 33  
                  + +p dG+v+e+ ++ ge v+a d l+ + ++
  CCD25497.1 1098 ISSPADGQVKEVLINSGENVEASDLLVVLEDT 1129
                  889*********************99988776 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.9e-06    0.0041      16      87 ..      88     156 ..      83     177 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 3.9e-06
  ATPgrasp_ST  16 fplvddKlkfkelalraglkvpkllgvikeqaeiseleafvkeleegvviKpakgsgGkGilviteredqdy 87 
                  +  v dK+  ++la+ra +  p++ g+    ++++e+e+fv+++   v+iK+a g gG+G++v+ e +d   
   CCD25497.1  88 IDSVGDKVSARNLAERANV--PTVPGTPGPIKTSKEAEEFVAQYGYPVIIKAAFGGGGRGMRVVREGDDI-A 156
                  56799********888765..44446666668889999999999655*****************775443.2 PP

>> NQRA  Na(+)-translocating NADH-quinone reductase subunit A (NQRA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   7.9e-06    0.0083      33      84 ..    1062    1116 ..    1047    1133 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 7.9e-06
        NQRA   33 gedyvglkpklkvkegdkVkkGqvlfe.dKknpgvlftspasGevve..inrGek 84  
                  g++ +g+  ++kv++g  VkkGq+++  +  + ++++ spa+G+v+e  in Ge 
  CCD25497.1 1062 GAPMAGVIVEVKVHKGSLVKKGQAVAVlSAMKMEMVISSPADGQVKEvlINSGEN 1116
                  566789999***************9872556779***********9944577765 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   3.2e-05     0.034       2     152 ..     130     271 ..     129     279 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3.2e-05
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieG.eEfavdayfdeeGepvilnilkkefaseedvsdrl 98 
                   +Pv+iK + g + +G++++++ ++  +a+++ ++e+         ++  +++  vE +++  + + v ++ d+ G+  ++++++++ + ++  ++++
   CCD25497.1 130 GYPVIIKAAFGGGGRGMRVVREGDDIADAFQRASSEA--------LTAFGNGTCFVERFLNKpKHIEVQLLADNYGN--VVHLFERDCSVQRRHQKVV 217
                  69****************************9999772........2335678999*****86267899999999987..568899*********9*** PP

  ATP-grasp_4  99 yvtsak.vieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnplr 152
                   v +ak + +e  +++ +   ++++++g +n  + +E+ v+++++ + iE+np+ 
   CCD25497.1 218 EVAPAKtLPREVRNSILTDAVKLAKECGYRNAGT-AEFLVDDQNRHYFIEINPRI 271
                  9999763678888899777778888****99876.9*****************75 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.8   2.9e+03      38      54 ..      81      97 ..      70     108 .. 0.85
   2 ?   12.2   1.0   0.00012      0.13      39      94 ..    1067    1123 ..    1038    1130 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.8
      RnfC_N 38 iGapakplvkvgdkVlk 54
                iG p +++ +vgdkV  
  CCD25497.1 81 IGPPSSVIDSVGDKVSA 97
                89999*********975 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00012
      RnfC_N   39 GapakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaiekrlvahgsgveav 94  
                  G   ++ v++g  V+kGq +a  ++  + + + ++  G+Vk++      + ++ + +
  CCD25497.1 1067 GVIVEVKVHKGSLVKKGQAVAVLSAmKMEMVISSPADGQVKEVLINSGENVEASDLL 1123
                  555678899************99985668889999******9976666555555544 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.8   0.00021      0.22      26      74 ..    1062    1109 ..    1059    1120 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00021
                  HHHHH-SEEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE CS
       GCV_H   26 aqeelgdvvfvelpevgtkvkkgeslaavEsvKaasevyapvsGevvev 74  
                  ++ ++g +v v++  +g  vkkg+++a++ + K+   + +p +G+v ev
  CCD25497.1 1062 GAPMAGVIVEVKVH-KGSLVKKGQAVAVLSAMKMEMVISSPADGQVKEV 1109
                  66788999999985.79*****************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.75u 0.30s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 7490.18
//
Query:       CCD25498.1  [L=188]
Description: hypothetical protein NDAI_0F01790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-30  103.3   0.0      1e-29  102.8   0.0    1.3  1  APG12     Ubiquitin-like autophagy protein Apg12


Domain annotation for each model (and alignments):
>> APG12  Ubiquitin-like autophagy protein Apg12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0   5.6e-34     1e-29       1      87 []     105     188 .]     105     188 .] 0.99

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 5.6e-34
                 EEEEEEEEETTS---S--EEEEETTSBHHHHHHHHHHHCT-.SSSS-EEEETTTB---TTSBHHHHHHHH-BTTEEEEEEESSS--- CS
       APG12   1 kitirlkaigdvpilkkkklkvnasdtvakvilflkkeLklqaseslflYvnnsFaPsPdeeveeLyecfgtdkklvlnYcisvAfG 87 
                 k++i++++ig++p ++++++k++ ++ + +v  fl+++Lk+   +++++YvnnsFaPsP+++v+eL+++f++ ++l+++Yc svAfG
  CCD25498.1 105 KVKIKFQPIGSIPPMRPSVCKISGTQPFSMVLIFLQRRLKV---DNIYCYVNNSFAPSPQQIVGELWRQFKVKDELIISYCGSVAFG 188
                 89**************************************8...9*****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.27s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 1328.21
//
Query:       CCD25499.1  [L=672]
Description: hypothetical protein NDAI_0F01800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     7e-129  431.2  11.6   8.4e-129  430.9  11.6    1.0  1  Kinetochor_Ybp2  Uncharacterised protein family, YAP/Alf4/glo


Domain annotation for each model (and alignments):
>> Kinetochor_Ybp2  Uncharacterised protein family, YAP/Alf4/glomulin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  430.9  11.6  4.7e-133  8.4e-129      11     592 ..      15     637 ..       1     661 [. 0.91

  Alignments for each domain:
  == domain 1  score: 430.9 bits;  conditional E-value: 4.7e-133
                      ------THHHHHHHHHHHHHHT...........SS-SHHHHCCCTSTHHHHHHTGGGGHHHHHHHHHTS--.......-SSSTHHHHHHHHHHH CS
  Kinetochor_Ybp2  11 veeappatDyltyltllelyleevn..ysieekeellpeLlelLqdnkeltkeIGWDLpklLlkflpksnv.......edklvklvmecledlA 95 
                      ++e   + D +++++ +e++++++n  +++ +ke++l++Ll+ ++ ++++  +I+WDLpk + kf+   ++        + +++lvm+c++++ 
       CCD25499.1  15 FDE--YEDDPISLAASIEMHSDQLNsdGKTSDKEKFLEALLKEIKSHPQIAAKISWDLPKEIFKFFTVTDIdinqrlgYSVIISLVMKCFNEIS 106
                      444..689*************************************99******************************9999************* PP

                      HCS-HHHHHHHHHGGGTS--C.............................................CHHHHHHHH....HHHHHHHHHHHSSS- CS
  Kinetochor_Ybp2  96 rlGNPkEllLkvcElLselsv..........eDedseeddesik.....................kkensvpfelkfyvLlellssllkRiqtk 158
                      + GNPk++lL++cE Ls ls+          +D                                ++ + +++++k+++L+el+ ++lkRi t 
       CCD25499.1 107 LSGNPKDCLLTGCEILSGLSLenenlslgmtQD----------SnkktstgpqyaqvdtkkyymeRTPADFFVTIKMHILFELIGTTLKRINTI 190
                      *********************444444433322..........25555666777899999999999999************************* PP

                      CHH..HHHHHHHHHHHHCCS-------S-SS-HHHHHHHHHHH.................HHHHHS-S---HHHHH..HHHHHHHHHHHHHHHH CS
  Kinetochor_Ybp2 159 yPsrFLatalsailnavtnlpseetledlefvlrrvytfkrpylpprkps......sapdpeasseelskikedEsalqrklLqsfltqllksy 246
                      yPs++L  a+s+ l++v+ ++  e l d+++v+rr+y+f+r+y++p+          ++  ++ +eel++i ++E++lq k+L++f+t  l+++
       CCD25499.1 191 YPSKYLRLATSSMLQFVRVNS--EGLYDIRIVMRRLYGFCRGYISPEHDVintdenIEQRGKIAQEELEEITRNEEVLQAKILRNFCTAGLQTC 282
                      *********************..***********************87779999987778999******************************* PP

                      HH...............H-------------HHHHHHHHHHHHHHHSSS-CCC-----------------..................----TT CS
  Kinetochor_Ybp2 247 llnpgvswavrlfpelqqsgrlseedafeedeelserdtilgrlvalatsfDidlsdellklikesrkiyesllkdveatedeavpllfeevpk 340
                      l+  + + ++ ++++l q + ++++ +    e       i +r++ la sfDid + e+l +++es +iy+ ++k v   + +  + +++ v  
       CCD25499.1 283 LKATNDKSDAYYYHKLLQTECQLSAFYKDLVE-------INSRFYNLALSFDIDTKEEFLHVLEESSSIYKGVPKVV--GKGQNGDIIKQVV-- 365
                      **999999999999997766666677666666.......************************************77..3568788999999.. PP

                      THHHHHHHHHHTT-TTCCS-S---HHHHHHHHHH...............HHHHHHT--.....SHHHHHHHHHHHHHHHCTS-TT-B-...... CS
  Kinetochor_Ybp2 341 daeasytyslfkaaaekeiplsrsGiLlLltaryaensghllpkisfpDaielllrfvtpslesatfqnkgledvllyllwvalestst..... 429
                       +++sy+y+l+k+++ek +  ++ Gi+lL++++y+e+++hl p+i  +Dai+l+lr+vtps +s ++ n ++e v++y+lwv+++++++     
       CCD25499.1 366 -HKLSYSYELQKITKEKGLYVDPFGIVLLSAFHYMETGNHLYPEIHVQDAIYLYLRCVTPSFYSDFYTNLSVEGVARYWLWVSITRSPSitlke 458
                      .8899***********************************************************************************669*** PP

                      .GGGGGSHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHB-HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHCT----.......... CS
  Kinetochor_Ybp2 430 elkelpekvlkaflqalllitarqpspelrkitltlltrlLhlspedvrfkfIrdtLencpyesvkaaaigilKdlmlkaskssqaselee... 520
                      e++elpe++l++fl++lll++++q+s+e+r+it+tlltrl +l pe+++f+f+ ++L +cpy+  k++a+gilKdlm+k +  +++++  +   
       CCD25499.1 459 EISELPEALLSVFLETLLLKNCTQNSEETRMITFTLLTRLSCLVPEEIAFEFLSESLASCPYPHGKSCALGILKDLMSKNQIHADKAD--Dsls 550
                      *****************************************************************************99988886554..4469 PP

                      ...........................----TTTSHHHHHHHHHHS--TTT......TTS-TTTTHHHHHHHHHHHHHHHHHS-TTT.SSCCCT CS
  Kinetochor_Ybp2 521 .........................asrtniflnperlsellslvlnaleellassenktllqenldlilaaLNllvvlkkkwdlev.lqlkke 588
                                                +r++i +++er+  ++++++  +e+  ++    + + ++l li+++L  ++ l +kwd++  l     
       CCD25499.1 551 qvteqvmnlsisvsgnrtpknktitDERPYIRITDERMTIVHRMAMADVEKV-ND---SKVRRSDLILIINYLEYFIGLCHKWDKKLlL----- 635
                      *************************************************994.43...4444799*******************33333..... PP

                      HHHH CS
  Kinetochor_Ybp2 589 lekf 592
                        +f
       CCD25499.1 636 --NF 637
                      ..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.32s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 4237.54
//
Query:       CCD25500.1  [L=529]
Description: hypothetical protein NDAI_0F01810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-06   28.6   0.6      1e-06   28.6   0.6    2.4  2  HUN       HPC2 and ubinuclein domain
  ------ inclusion threshold ------
      0.088   12.9   2.0       0.31   11.2   0.7    2.6  2  RRP7      Ribosomal RNA-processing protein 7 (RRP7) C-termina
       0.39   10.8   4.1        0.5   10.5   0.0    3.2  3  CRA       Circumsporozoite-related antigen (CRA)


Domain annotation for each model (and alignments):
>> HUN  HPC2 and ubinuclein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3     0.069   4.1e+02      17      31 ..     442     456 ..     441     468 .. 0.74
   2 !   28.6   0.6   1.7e-10     1e-06       5      49 ..     463     504 ..     459     507 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.069
         HUN  17 DieDpFIDDsElyde 31 
                 D+eD   DD+E+ + 
  CCD25500.1 442 DEEDEMLDDEEATET 456
                 9999999***96554 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 1.7e-10
         HUN   5 rdddgddtgsgYDieDpFIDDsElydelvpdilktktgGFYvnqg 49 
                    +g +++  YD +DpFIDD+El  e +   +   ++GF+v+ g
  CCD25500.1 463 HPMKGKSMIGKYDFDDPFIDDTELLWEEQ---QASTKDGFFVYFG 504
                 5567889999*************999998...6667789999866 PP

>> RRP7  Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.72   4.3e+03     103     114 ..     388     399 ..     363     407 .. 0.55
   2 ?   11.2   0.7   5.2e-05      0.31      33      83 ..     425     476 ..     416     478 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.72
        RRP7 103 Dkekieelkekr 114
                  ke ie lk+ +
  CCD25500.1 388 TKEDIESLKKMK 399
                 334444444433 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 5.2e-05
        RRP7  33 kkkeeevDeDGfvtVtrgkkaaa..keeaaeekakkkekkkkkkkelldFYrF 83 
                 ++  ee+DeDG vtV r+++ +    eea+e++ kk+++  k  k++++ Y F
  CCD25500.1 425 NNTLEEEDEDGAVTVIRDEEDEMldDEEATETSPKKRSHPMKG-KSMIGKYDF 476
                 3445889**********66333343444434444444333333.444577777 PP

>> CRA  Circumsporozoite-related antigen (CRA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.62   3.7e+03      47      47 ..      38      38 ..       8      85 .. 0.52
   2 ?   10.5   0.0   8.4e-05       0.5      35      93 ..     282     402 ..     269     407 .. 0.80
   3 ?   -1.8   1.6      0.54   3.2e+03      36      64 ..     412     446 ..     400     492 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.62
         CRA 47 k 47
                 
  CCD25500.1 38 T 38
                1 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 8.4e-05
         CRA  35 ksrftkkkgkykknekevekaeeke..............................................................deneedridvlk 71 
                    +t kk+  kk++ +  k+ e +                                                              den+    +v +
  CCD25500.1 282 TPSITPKKKSTKKKPLHTSKQTEVKpddtvaqttpksaprlvpppplksaslvdvfenpstksienseangiildiplystrsndylDENGTVVFNVYR 380
                 5555555555555555555544444455566666666999999999999999999999999999999999***************************** PP

         CRA  72 LikelekKeeeliivnKkkkkY 93 
                 L++e    +e++  ++K+k+ +
  CCD25500.1 381 LLQENASTKEDIESLKKMKRNL 402
                 ******************9865 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.54
         CRA  36 srftkkk.gkykknekevekaeeke.........denee 64 
                 s + +++   yk+n++  e+++e+          d   e
  CCD25500.1 412 SVISTGRpDDYKNNNT-LEEEDEDGavtvirdeeD---E 446
                 5555666444444444.444433334777764442...2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1529  (0.0852808); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 3618.41
//
Query:       CCD25501.1  [L=579]
Description: hypothetical protein NDAI_0F01820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.2e-282  935.6  11.4   9.2e-282  935.4  11.4    1.0  1  Acatn     Acetyl-coenzyme A transporter 1


Domain annotation for each model (and alignments):
>> Acatn  Acetyl-coenzyme A transporter 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  935.4  11.4  5.1e-286  9.2e-282       1     548 []      17     577 ..      17     577 .. 0.95

  Alignments for each domain:
  == domain 1  score: 935.4 bits;  conditional E-value: 5.1e-286
       Acatn   1 qfylLvvLyllqGiPvGLafgtiPflLkslaketsftelgvfslatyPyslkilWsPivDslyskkiGrrrsWiiPvqlvsgilllvlglaiskglife 99 
                 qfylLv+Ly++qGiPvGLafgtiPflLks++ketsft+lgvfs+atyPyslkilWsPi+DslyskkiGrrrsWiiP+ql+sg++l++lg++iskg+if+
  CCD25501.1  17 QFYLLVALYFVQGIPVGLAFGTIPFLLKSMVKETSFTSLGVFSIATYPYSLKILWSPIIDSLYSKKIGRRRSWIIPIQLASGLMLYILGHCISKGYIFS 115
                 8************************************************************************************************** PP

       Acatn 100 gvddafh.geasekvlkvnilsLtlvflvLvllcatqDiavDgWaltiLskkslsyastaqtvGlnlGyflsftvflslnssdfvnkylrkvpleyglv 197
                 gvd+afh +++ e++++v+i++Lt++f+ Lv+lcatqDiavDgWaltiLsk+slsyastaqtvGln+Gyflsftvflslns +fvnky+rk+p+++g++
  CCD25501.1 116 GVDAAFHpEQTVESMRTVKISTLTWYFGSLVFLCATQDIAVDGWALTILSKRSLSYASTAQTVGLNMGYFLSFTVFLSLNSGEFVNKYFRKIPQKFGWI 214
                 *******66666*************************************************************************************** PP

       Acatn 198 slsgylklaGllyllvtlyvvfltkekplks.....alpsvskkkldekeke.lskvaiieynds.deeksektssiksvyrllikvlkLksvrllali 289
                 sl+gy+k+aG++y++vt+yv f+t+e+p+ s     +lp + ++++d + +e  ++  +ie+n + +   s++t+s+  +y++++kvlkLksvr+l++i
  CCD25501.1 215 SLGGYMKFAGFVYVIVTIYVGFCTTENPFISnkktgILPYHIDTSEDIHIEEkKDDDLYIETNGDeEDGFSDRTRSLGFIYKCFFKVLKLKSVRTLTFI 313
                 ****************************877677655999888774422222022335666665425566899************************** PP

       Acatn 290 hlisklafqcneaatnlkLLekGlkreDlavtvlidvPfeiifgyyvakwssdkekekkek.....elkkkklsalkklvkllvgdagvltPWlygflg 383
                 hlisk+afqcne+atnlkLLe+G+kreDlavtvlidvPfeiifgyyvakwssd+e+e++++     ++++k+  + +k++k++vgdagvltPWl+g+lg
  CCD25501.1 314 HLISKIAFQCNEGATNLKLLEQGFKREDLAVTVLIDVPFEIIFGYYVAKWSSDSENERHHHsdteaHKNTKSPVRFRKWIKWFVGDAGVLTPWLWGYLG 412
                 ******************************************************9999888777766777778899*********************** PP

       Acatn 384 rllaailgsyvvksfPkdgeitksyfllviiqhllgsflstvqfvgisafhtriaDpvlgGtymtllntlsnlGgtWprllvlslidyftiyecvledk 482
                 rll+ailgsyv+++fPk+ge+tk+yf+l+iiqhllgsf++tvqfvgisafhtriaDpvlgGtymtllntlsn+GgtWpr++v+s+i+yftiyec+l+++
  CCD25501.1 413 RLLSAILGSYVIHQFPKNGELTKGYFFLIIIQHLLGSFMATVQFVGISAFHTRIADPVLGGTYMTLLNTLSNFGGTWPRFFVMSMINYFTIYECELPNS 511
                 *************************************************************************************************** PP

       Acatn 483 sketvllknaskelctkslggkvsivrDgyyvtnllCivlGillyftylkkkaqkLqklpisaWrv 548
                 +++++++k++++e+ct++l+g+v+i+rDgyyvtn+lC+vlG++lyf+ylk+kaq+Lq+lpisaWr+
  CCD25501.1 512 EERNLVFKGGNMEVCTNGLHGEVKIIRDGYYVTNALCVVLGVILYFCYLKRKAQQLQTLPISAWRC 577
                 *****************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4035.72
//
Query:       CCD25502.1  [L=363]
Description: hypothetical protein NDAI_0F01830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-48  164.0   0.0    7.4e-48  162.6   0.0    1.7  2  Transket_pyr     Transketolase, pyrimidine binding domain
    1.1e-37  128.6   0.1    2.2e-37  127.7   0.1    1.5  1  Transketolase_C  Transketolase, C-terminal domain


Domain annotation for each model (and alignments):
>> Transket_pyr  Transketolase, pyrimidine binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.0   8.2e-52   7.4e-48       2     176 ..      35     210 ..      34     212 .. 0.98
   2 ?   -1.7   0.0      0.23   2.1e+03      73      93 ..     291     311 ..     287     318 .. 0.83

  Alignments for each domain:
  == domain 1  score: 162.6 bits;  conditional E-value: 8.2e-52
                   EEEHHHHHHHHHHHHHCTTTTEEEEESSTH..HHHTTCHCCHHEGGTTEGEEE--S-HHHHHHHHHHHHHHCTTEEEEEEEEHHHHGGG..HHGGHH CS
  Transket_pyr   2 kiawrkaeaealaellkedpevvligaDva..ggtfsvrkgllhdqgegrvidsgisEqavlgfavGaalagpllviveaqFgdFangA..qiyadq 94 
                   ++++r+a++ a+ae+l++d++v++ig++va  +g ++v+kgll+ +ge+rv+d++i+E++++g avGaal+g l++ive++ ++F+++A  ++++++
    CCD25502.1  35 TMTVREALNSAMAEELDRDDDVFIIGEEVAqyNGAYKVTKGLLDRFGERRVVDTPITEYGFTGLAVGAALKG-LKPIVEFMSFNFSMQAidHVVNSA 130
                   6899**************************99****************************************.9*********************** PP

                   HHHCHHHHHT--EEEEESBSGGGSTTGTTTSBSSHHHHHHTSTTEEEE--SSHHHHHHHHHHHHHSSS.SEEEEEE-SSEEC CS
  Transket_pyr  95 airsgeakgklkvgvvtrlpigvgedGpehqsaeleaflrlipglkvvrPsdpaetkhllrrairredrkPvvlrlpksllr 176
                   a+++++++g +k+ +v+r p g+    ++++s+   a++ +ipglkv++P++++++++ll++air  d++Pvv+++++ l+ 
    CCD25502.1 131 AKTHYMSGGTQKCQIVFRGPNGAAVGVAAQHSQDYSAWYGSIPGLKVLVPYSAEDARGLLKAAIR--DPNPVVFLENELLYG 210
                   *****************************************************************..99********99986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.23
                   TEEEEEEEEHHHHGGGHHGGH CS
  Transket_pyr  73 llviveaqFgdFangAqiyad 93 
                    l+ ve +F  F  gA+i+a+
    CCD25502.1 291 HLITVESTFPSFGVGAEIIAQ 311
                   48899********99999886 PP

>> Transketolase_C  Transketolase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   0.1   2.4e-41   2.2e-37       3     124 .]     230     352 ..     228     352 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.7 bits;  conditional E-value: 2.4e-41
                      EEEEETTSSEEEEEETTHHHHHHHHHHHHHTT.TTCEEEEE-SEEESHHHHHHHHHHHHHSEEEEEEEEESTTSHHHHHHHHHHH.CCCTTCSS CS
  Transketolase_C   3 aeilregkdvtlvayGsmveealeAaeeLeke.gisaeVvdlrtvkplDketilesvkktgrlvvveeavkrgGigsevaaalae.eafdglda 94 
                      a++++egkd+ +v+y + v+++l+Aae Lek+ g+saeV++lr+++plD + i + vkkt++l++ve   +++G+g+e++a+++e eafd+lda
       CCD25502.1 230 AKVEKEGKDISIVTYTRNVQFSLQAAEILEKQyGVSAEVINLRSIRPLDIDAIIKTVKKTNHLITVESTFPSFGVGAEIIAQVMEsEAFDYLDA 323
                      8999****************************************************************************************** PP

                      EEEEEEE-SSSSSSGHHHHHHHTT-SHHHH CS
  Transketolase_C  95 pvkrvggpdviepgsaeelekafgldaeki 124
                      p++rv+g dv++p++ +ele+++ +d++ i
       CCD25502.1 324 PIQRVTGADVPTPYA-KELEDFAFPDPDTI 352
                      ***************.***********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       441  (0.024597); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2657.28
//
Query:       CCD25503.1  [L=539]
Description: hypothetical protein NDAI_0F01840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-72  242.5   0.0    8.4e-72  242.1   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    1.3e-15   58.1   0.6      3e-15   57.0   0.2    1.9  2  AMP-binding_C  AMP-binding enzyme C-terminal domain
  ------ inclusion threshold ------
      0.053   13.6   0.0        1.8    8.6   0.0    2.4  2  RTX_C          RTX C-terminal domain


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.1   0.0   1.4e-75   8.4e-72       9     422 ..      14     435 ..       8     436 .. 0.86

  Alignments for each domain:
  == domain 1  score: 242.1 bits;  conditional E-value: 1.4e-75
                  TTSEEEEECCSTEEEEHHHHHHHHHHHHHHHHH......TTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTESEEE. CS
  AMP-binding   9 pdkvalvdsgegqtlTYreldervnrlAagLrs......lGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseakvli. 99 
                   d va+v  +++ ++TYr+l + v  +   +++        vk++d+ ai  pn++e++va+l++ +   + +plnp++++ e  + l+d +++++  
   CCD25503.1  14 SDNVAVVIPETDVQVTYRDLSHMVGHFQTIFKNpesplySEVKRQDTLAISIPNGLEFIVAYLGATMDAKISAPLNPNYKENEFNFYLNDLKSRAVCv 111
                  5788888888999**************99998544565559*******************************************************96 PP

                  .E.TCTCCCHHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.................-TSCCCS-BTTSEEEEEEE--SSSS-EEEE CS
  AMP-binding 100 .a.tvdselleklleaaakleavklvivldadellkeeelkeeeeseekae.................kpeeeeelkpddlayiiYTSGTTGkPKGVm 178
                   + t + + ++++ +aa++     ++++  +++++ e e ++ +++++  +                 +   +   ++ d+a+i+ TSGTT  PK V 
   CCD25503.1 112 pKgTLK-DSNSQIVKAAKNFGCFITELYFNQKRFRVEYEIYSPKDNYK--TliysslskpkfinndpqR--FPGFSRSTDVAMILHTSGTTSAPKTVP 204
                  623222.22344445555445555566666666666655555554443..1456788899999997532..3446788******************** PP

                  EEHHHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGCCHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCCCHHCH CS
  AMP-binding 179 lshrnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaaldpklllelieklkvtviagvPrvleallesgalkaa 276
                  l h n+v ++ ++  ++  kl+e+d+ + ++pl+h+ gli  ll ++   ++vv+++++++  +++++++i+ +k+t + +vP++   +l+ ++++  
   CCD25503.1 205 LLHLNIVRSTLNI--SQSYKLTEQDRSYIVMPLFHVHGLIGVLLSTFRIQGSVVVPHRFSP--KTFWKQFIT-YKCTWFSCVPTISMIMLNVPKPS-- 295
                  *********9997..56678899********************************999988..668888888.******************98888.. PP

                  HHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTCEEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEETTSEEEEEEEETTS CS
  AMP-binding 277 kkakdlsslrlvllggeplspellrffralfgeevlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvpdgeeGellvrgpgv 374
                       ++ +r++ ++ ++l p++ +++++ f ++vle+Y +TE+++ +t ++l+  k+k+g+vG+p  gvev i+D++  + +++g+ Ge+ +rg++v
   CCD25503.1 296 ----PMPYIRFIRSCSSALAPATFHRLERNFQCPVLEAYAMTEASHQMTSNNLPPMKRKPGTVGRP-QGVEVFILDDN-DNVLEQGKIGEVSIRGENV 387
                  ....8999****9***********************************88666777779*******.9*********9.99***************** PP

                  -SEBTT-HHHHHHHEEET.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 375 mkgYlkkpeataeafdse.grwlrTGDlgrldedGyleivgRkkdlikl 422
                  + gY ++++a++e f+ e ++++rTGD g++d++G l ++gR+k+li++
   CCD25503.1 388 TLGYKNNDKANKENFT-ErENFFRTGDQGYFDPEGFLVLTGRIKELINR 435
                  ***************9.6566**************************86 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.9   1.7e+04      30      39 ..      17      26 ..      10      41 .. 0.64
   2 !   57.0   0.2     5e-19     3e-15       1      76 []     444     519 ..     444     519 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.9
                   EEEEEE---- CS
  AMP-binding_C 30 vafVvlkdgs 39
                   va+V++++++
     CCD25503.1 17 VAVVIPETDV 26
                   7888886543 PP

  == domain 2  score: 57.0 bits;  conditional E-value: 5e-19
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---.-.--HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg.s.ealeeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    ev  + +s p+V+ea+ +Gvp+e+ G+++ a Vvlk+g + e   +e + ++ ++l++++ p kv+fvd+lpkt++GK
     CCD25503.1 444 EVDGVMLSNPKVDEAVSFGVPNEMYGQVVHAAVVLKPGaKmE--HDEFITFLSDKLAKFKLPVKVYFVDKLPKTATGK 519
                    789999******************************995233..5********************************9 PP

>> RTX_C  RTX C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.029   1.7e+02      75     162 ..      14     104 ..       9     108 .. 0.67
   2 ?    8.6   0.0    0.0003       1.8      69     117 ..     420     468 ..     414     475 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.029
       RTX_C  75 sqqvdeLiakgngkisaeelskvinnknkleekls...ssesynllkqkknlsndieklisstsaftssskalsaspldirnnlssyapsl 162
                 s++v  +i +++ +++  +ls+++ +++   +      +se     +   ++ n +e +++  +a    + +    p+  +n ++ y++ l
  CCD25503.1  14 SDNVAVVIPETDVQVTYRDLSHMVGHFQTIFKNPEsplYSEVKRQDTLAISIPNGLEFIVAYLGATMDAKISAPLNPNYKENEFNFYLNDL 104
                 77788888888999999999999998775543322000233333333334666777777777777666665566689999*******9977 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0003
       RTX_C  69 dGeritsqqvdeLiakgngkisaeelskvinnknkleeklsssesynll 117
                 +G  ++   + eLi++g++kis+ e+ +v+    k++e +s++   ++ 
  CCD25503.1 420 EGFLVLTGRIKELINRGGEKISPIEVDGVMLSNPKVDEAVSFGVPNEMY 468
                 678899999********************99999999999998777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 4062.97
//
Query:       CCD25504.1  [L=628]
Description: hypothetical protein NDAI_0F01850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-96  323.6   9.6    2.7e-96  323.1   9.6    1.2  1  Tyr-DNA_phospho  Tyrosyl-DNA phosphodiesterase
     0.0078   15.8   0.0      0.021   14.4   0.0    1.7  1  BBIP10           Cilia BBSome complex subunit 10


Domain annotation for each model (and alignments):
>> Tyr-DNA_phospho  Tyrosyl-DNA phosphodiesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.1   9.6    3e-100   2.7e-96       2     424 .]     151     614 ..     150     614 .. 0.90

  Alignments for each domain:
  == domain 1  score: 323.1 bits;  conditional E-value: 3e-100
                      EE--TTTT----------EE-HHHHH--TTEEEEEEE-S-EEHHHHHTTS.-T-...-EEEEEE..............ETTSEE-TEEEEEE-- CS
  Tyr-DNA_phospho   2 lkltkirdlpeesernkdtitlkdilgdplleeavqfnFlfdlefllsqldedvrrkvkvvivhgakkeedeererleekakrypnvelieakm 95 
                      l++++++d+ +++ +++++it+kdil+ ++l+e+++++F+f+l+f++ q+++++   +k++i+++  + +  ++ r ++  + ++++e+ie++m
       CCD25504.1 151 LIKSEMYDTIDNDISSPYFITMKDILNGSNLKETILLSFQFELDFIIPQFNKNI---EKITIIAQRGTISPFTHPRDKQLWEIFQHLEIIEFQM 241
                      678899999999999***********************************9998...*******988888877778889999************ PP

                      -.TT--B---EEEEEETTSEEEEEEESS-BSHHHHHSSB-EEEE---EEE......S--SS--HHHHHHHHHHHTT..-HHHHTHHHHHTEE-G CS
  Tyr-DNA_phospho  96 pepfgthHsKmmilfyeddslrvvihtaNlieaDwgnmtqgvwrspllpllesskeseeesgtrFkrdLleYLkaygkkklkklieklkkyDfs 189
                      p p+++hHsKm+i++y+d+s++++++++Nl+ ++++ ++q++w+sp+l      ++s+ ++  +Fk++L++Y+k+y+  k+++l +kl+++Dfs
       CCD25504.1 242 P-PYTCHHSKMIINYYRDNSCKIFLPSNNLTYKETNLPQQVCWCSPKLVP---LTSSSLDTIPTFKENLIDYFKSYKMGKITNLLKKLESIDFS 331
                      *.**********************************************99...78999999********************************* PP

                      GGT.-EEEEE---TTS--....HHHHHHHHHHHTCT.....T----.EEEEEEE-SBB---S-.SSS---HHHHTHHHHHTTSS.......... CS
  Tyr-DNA_phospho 190 evr.valiaSvPgrhkgsktkwGlakLkkalkelpl...ekeeksk.eleivaqvSSigslgstekwlknefleslspalqgkd.......... 268
                      +++ +++i+S+P++  +s    Gl+ L+k l  ++    +k  +s+ + ++++q+SSig+  s ++++ n+f+++++p+l+++           
       CCD25504.1 332 PLKnFNFIYSTPNKDFSS----GLKLLAKNLLPTEKknwSKMMDSDiTSHYLCQTSSIGASLS-KSKPINIFTHLMIPLLTSIMdseviydeni 420
                      ***************999....*******9955444333444444479**************9.89999***********88888899998887 PP

                      .......---HHH......HHTEEEE..EE--BSGGGTTSTTGGGGGGG-B---...SGGHHHHHH..HTS--EEEE-TT......TTTTT--B CS
  Tyr-DNA_phospho 269 .......kskeee......ekkskpkfkiifPtveevrrsldgyasggsihfkiqsaqqqkqleel..kpylckwkqdse....eeagRkraap 343
                             +   +e      ++k+ p+  i+fPt+ee+ + + +y  +g++hfk+ +++q+k ++++  k++ +++kq+++     + +Rk +++
       CCD25504.1 421 kklnfkdT---QElltdyeNMKIVPY--IVFPTKEECLNTPMQYLPSGWFHFKYLHNEQSKSYYHMlsKDFQIFYKQNRTkinnIRYKRKSTPA 509
                      66655322...225555678999999..*************************************************9999999679******* PP

                      --EEEEEE........--STTSEESEEEEES--BSHHHH--S.....SS--SSBEEEEEEEGG............................... CS
  Tyr-DNA_phospho 344 HiKtyirf........ssktlkkidWalltSaNLSkqAWGelekakeelrirsyElGVlvlpk.......kdlpee.................. 404
                      H+K+y+++        +++ ++++dW+l+tSaNLS +A G++     +  +r+yE+G+l+ ++            +                  
       CCD25504.1 510 HSKFYLKSritkknstNDNPFENLDWCLYTSANLSVSALGRI-----TSAPRNYEVGILFNNDelpekmqL----Kcksfvdtiylnndapqdk 594
                      ****************99************************.....789***********9966655550....1555555566666666668 PP

                      ------SEEESS-SSEEE-- CS
  Tyr-DNA_phospho 405 eektevgvrvPydlplepYs 424
                      +++++ +++vP++lp+++Y+
       CCD25504.1 595 DANDNFTLMVPFTLPVSKYD 614
                      899999*************5 PP

>> BBIP10  Cilia BBSome complex subunit 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.3e-06     0.021      11      47 ..     264     302 ..     256     316 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.3e-06
      BBIP10  11 VlPkqGllyse.dqltlv.LcKPKllPlKSvtLEklEkM 47 
                  lP + l y+e + ++ v  c PKl+Pl S +L+ + + 
  CCD25504.1 264 FLPSNNLTYKEtNLPQQVcWCSPKLVPLTSSSLDTIPTF 302
                 599999*****6666544279************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1517  (0.0846115); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4367.48
//
Query:       CCD25505.1  [L=1004]
Description: hypothetical protein NDAI_0F01870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-05   23.5   0.0    0.00037   21.1   0.0    2.3  1  Methyltransf_11  Methyltransferase domain
  ------ inclusion threshold ------
       0.18   12.5   0.0        0.7   10.6   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
        1.1    9.4   8.3        2.5    8.3   0.2    3.0  2  SH3BGR           SH3-binding, glutamic acid-rich protein
        6.4    6.7  49.9        2.1    8.2   6.6    3.3  3  TFIIA            Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   8.2e-08   0.00037      54      95 ..     794     837 ..     772     838 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 8.2e-08
                      CTSS-TT-EEEEEEES-CCC-..CCHHHHHHHHHHHEEEEEEEE CS
  Methyltransf_11  54 klpfednsfDlvvssevlhhv..edpekalkeiaRvLkpgGllv 95 
                      +lpf++ns+  +++ + ++ +   ++++ l+ei+R+L pgG+l+
       CCD25505.1 794 RLPFKSNSIPSIFCPWIWTDLtyTKWRAMLREIYRCLIPGGYLI 837
                      59*******************9999*****************98 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00016       0.7      57      97 .]     794     834 ..     781     834 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
                      GBSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHHHHEEEEE CS
  Methyltransf_25  57 dlpfedgsfDlvvssgalhhlsdedlekalkeiarvLkpgG 97 
                      +lpf+++s+  +++   +  l+  +++++l+ei+r+L pgG
       CCD25505.1 794 RLPFKSNSIPSIFCPWIWTDLTYTKWRAMLREIYRCLIPGG 834
                      4899**********65555577789***************9 PP

>> SH3BGR  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   3.6      0.05   2.3e+02      27      87 ..     171     237 ..     147     245 .. 0.60
   2 ?    8.3   0.2   0.00057       2.5      16      51 ..     440     475 ..     427     500 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.05
                 HHHTT--EEEEETTT.-HHHHHHHHHCST-CCCS-S...SSS--S-EEEETT..EEEEEHHHHHHHH CS
      SH3BGR  27 LdakkiefdevDitk.deeerelmrenaapeekkpe...ngkplPPqifned..eYcGDydaffeak 87 
                 +d   ++ d +Di + + ++++ ++e+   +ek+ +   ++  + P   n++  e   +yd+  e k
  CCD25505.1 171 IDVDGLDIDDLDINNeNSSQKRKLKEKEKEKEKQRQkavTKIDTIPNTNNNNdnENKYEYDNENEEK 237
                 4566777889999886677889999888444433330003333445444433013344444444444 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00057
                 HHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHH CS
      SH3BGR  16 ikkkqqevlriLdakkiefdevDitkdeeerelmre 51 
                  +++  e++++    +i ++++Di +++ + +lm++
  CCD25505.1 440 QQQREFETITFSSNSNIGYENKDINNNNRDSQLMYR 475
                 34555579999999*******************985 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  24.5    0.0017       7.8     169     355 ..      51     248 ..       7     259 .. 0.38
   2 ?    3.8   3.1     0.011        47     200     325 ..     425     557 ..     346     585 .. 0.44
   3 ?    8.2   6.6   0.00048       2.1      44     257 ..     605     876 ..     599     923 .. 0.59

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0017
       TFIIA 169 saaqssvaalqaq.sqqaqalaepqqqlekq.......qqqqqqqqqqqqqqqvqqqqqe..esqqaqqasqe......qvagsqvessqtdgaedale 251
                 +  ++s+a+++ + +q  + ++ p+     +        q+  +++++ +++++ ++  +  +++  q           ++++  ++s+q+ ++++ l+
  CCD25505.1  51 NSNHNSNANSKYSsNQTSSRTISPSP----SrslfhqiSQSNSNSHSHSNSNTQLSS--AsdNKKILQ----VnsssgaSTSSLPLHSNQEHSSQSPLQ 139
                 11122222222111111122222222....122322111111112222222211111..111111111....112233322224445555555555555 PP

       TFIIA 252 eespv..legelsaeeeagaqkeelsreeidrire.................ealkakelekeskkkkraeessladlseilqlDGagddsdeeeeeee 331
                 e++++      ++++  + +++++l ++++    +                 +++k+k +eke       +e+++++++ + ++D    +++++++e++
  CCD25505.1 140 EQHNLfkRSTTPLSSIIKPSKNKTLIDDDM----DidvdgldiddldinnenSSQKRKLKEKE-------KEKEKQRQKAVTKIDTIPNTNNNNDNENK 227
                 555553322222222222222222222222....12344666766555543322222222222.......22344455566677776666666555555 PP

       TFIIA 332 sded..sdsessddedeq.veEDplNS 355
                  ++d  +++++sd+ de+         
  CCD25505.1 228 YEYDneNEEKESDNGDEKlD------N 248
                 55552122222222222221......2 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.011
       TFIIA 200 qqqqqqqqqqqqqqvqqqqqe.................esqqaqqasqeqvagsqvessqtdgaedaleeespv.....legelsaeeeagaqkeelsr 276
                 ++++q+q ++qqqq+qqq  e                                  ++++++d++         +     ++  l+              
  CCD25505.1 425 SSIRQNQGKLQQQQQQQQR-EfetitfssnsnigyenkD----------------INNNNRDSQL--------MyrptdIDILLL-------------- 484
                 1222222222222111111.1112222122222222110................1111111111........011111111111.............. PP

       TFIIA 277 eeidrire...................................ealkakelekeskkkkr.aeessladlseilqlDGagddsde 325
                                                            +  + ++l++e++ kk+ ++e       + +q D   d+s +
  CCD25505.1 485 -------RpkletslgwqialdeptlniadfeldispwseagtS-NNTSNLKAEKNVKKQlESE----FNDRFIQPDANTDKSGP 557
                 .......0122222222222222222333344444444443321.1111122222222221222....23446666666666665 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00048
       TFIIA  44 aefpwdpkpeeaqspqfvlqlpqslkqalq.asaaaa.....sqapastsqslpslvipagksvqslta...nssaataatfslpakleppvqipagvt 133
                 ++ +    +ee++ +q++ ++p+++k+ +  ++   +     ++  + ++++lp+   ++g++++s+t+   + s+++ +t+++ ++++ ++ i+  ++
  CCD25505.1 605 INTTTTTSREETPEQQQQSKNPKKKKKPAPvKN---TrksgiVNFFKRKHSQLPN-PLNNGNNISSTTNplpQPSSTAVSTTTHSINSDRSISIID-QN 698
                 554444444444444443333333222221233...1456885566666667777.5567778888886688666567777777777777666655.44 PP

       TFIIA 134 lqtasg..qlykvnvqasgaqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqqlekq...qqqqqqqqqqqqqqqvqqqqqe....... 220
                 ++t +   + y    +  +  +++a p q +   ++g++++ss+++l++++++ ++ +  +++  k+    q+ + + + ++++ +     +       
  CCD25505.1 699 QHTENVwlEDYFC--KLLSNYRRIALPTQYI-LPTTGKTSTSSTPSLNSNNSSDSVGSDDNSN--KNnpySQESTVSSTITESKPT-----Kktamlyg 787
                 4444443344433..4445555555566555.5579999999999999986665555555555..221111112222222222222.....12356688 PP

       TFIIA 221 ..........................................................esqqaqqasqe...qvagsqvessqtdgaedaleeespvl 257
                                                                           +  + +++  +   ++++  ++++q+++++   ++++p++
  CCD25505.1 788 keflkirlpfksnsipsifcpwiwtdltytkwramlreiyrclipggyliaiipdmkiS--NSNTK--DastNFPT--SNNKQQQQNN---NSNQPIF 876
                 89999999999999999999999999999999999999999999999999998765431..22222..11113333..3333333332...2222343 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2725  (0.151988); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.50
# Mc/sec: 5982.42
//
Query:       CCD25506.1  [L=529]
Description: hypothetical protein NDAI_0F01880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-35  123.2   0.2    2.5e-35  122.1   0.2    1.6  1  AAA_2            AAA domain (Cdc48 subfamily)
    2.2e-14   54.0   0.2    4.3e-14   53.1   0.2    1.5  1  AAA              ATPase family associated with various cellul
    1.2e-08   34.9   0.3    8.1e-08   32.2   0.0    2.5  2  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
    1.4e-06   28.3   0.0    3.7e-06   27.0   0.0    1.7  1  AAA_5            AAA domain (dynein-related subfamily)
    3.9e-05   23.9   0.5     0.0013   19.0   0.3    2.8  2  AAA_22           AAA domain
      7e-05   22.3   0.0     0.0054   16.1   0.0    2.6  3  Mg_chelatase     Magnesium chelatase, subunit ChlI
    0.00017   22.0   0.1     0.0011   19.4   0.1    2.2  2  AAA_16           AAA ATPase domain
     0.0005   19.8   0.0      0.084   12.6   0.0    2.8  3  Sigma54_activat  Sigma-54 interaction domain
    0.00075   19.3   0.2     0.0029   17.3   0.2    1.9  1  AAA_24           AAA domain
     0.0017   18.5   0.0     0.0037   17.4   0.0    1.5  1  Sigma54_activ_2  Sigma-54 interaction domain
     0.0027   17.5   0.2      0.012   15.4   0.1    2.0  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
      0.008   15.9   0.0      0.019   14.7   0.0    1.6  1  IstB_IS21        IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.015   14.4   0.2      0.029   13.5   0.2    1.4  1  MCM              MCM P-loop domain
      0.016   15.1   0.1       0.25   11.3   0.0    2.4  2  NACHT            NACHT domain
      0.017   14.2   0.2      0.035   13.1   0.0    1.6  2  T2SSE            Type II/IV secretion system protein
       0.02   14.7   0.1       0.76    9.5   0.0    3.0  3  DEAD             DEAD/DEAH box helicase
       0.02   15.4   0.0      0.063   13.8   0.0    1.9  1  ABC_tran         ABC transporter
      0.021   15.0   0.0      0.056   13.6   0.0    1.7  1  AAA_33           AAA domain
      0.021   14.3   0.0      0.038   13.5   0.0    1.4  1  AAA_7            P-loop containing dynein motor region
      0.024   14.7   0.0      0.073   13.1   0.0    1.9  1  AAA_14           AAA domain
       0.04   13.6   0.0       0.12   12.2   0.0    1.7  1  AAA_29           P-loop containing region of AAA domain
      0.063   13.8   0.3       0.19   12.2   0.0    2.1  2  AAA_18           AAA domain
      0.093   12.2   0.0        0.2   11.1   0.0    1.5  1  PhoH             PhoH-like protein
        8.2    6.9  11.3        4.9    7.6   1.6    3.0  2  AAA_23           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.1   0.2   3.4e-38   2.5e-35       3     171 .]     160     383 ..     158     383 .. 0.96

  Alignments for each domain:
  == domain 1  score: 122.1 bits;  conditional E-value: 3.4e-38
                 ---EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---....----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----..---------HHH CS
       AAA_2   3 iisilllgptgvGktelakalaellfvkkekkliradaselle....eeevehlvsrligappgyvgaeegGivllDEidKihpk..essgadvSregV 95 
                 ++++l++gp+g+Gkt+la +la++l+v    ++++ d+++l++    +e+ve  ++rl+++++++v+++e+Gi+ lDEidK ++   +  ++dvS+egV
  CCD25506.1 160 KSNVLVVGPSGSGKTLLASTLARILDV----PIAITDCTQLTQagyiGEDVEVCIERLLVNADFDVAKAERGIIVLDEIDKLAKPsaSIGTKDVSGEGV 254
                 789***********************8....***************************************************999877789******** PP

                 HHHHHHHHH--EE-....................----.--EE-TT-EEEEEE--TTHHHHTTTS-S................................ CS
       AAA_2  96 qrdLLqileggtlt....................dkqg.rkvdtknilfImtgafgsskisdesrsk................................ 141
                 q+ LL+i+eg +++                    +k++   +dt+nilf + gaf + ++   +r++                                
  CCD25506.1 255 QQSLLKIIEGHKVEitterplkkgsddrgnqktpKKSEtFVIDTSNILFMIMGAFVGLDKHIVKRINrmknidteiskenenqkarfsntieevelgng 353
                 *********************************96666689**************9999999999999*****************************99 PP

                 TTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2 142 eeeeekkkeeveeelkkglipEllgRlpei 171
                 ++      +++ +++++glipEl+gR+p++
  CCD25506.1 354 KKVPALNLTTPSDLVSFGLIPELIGRVPIV 383
                 899999999******************985 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.2   5.7e-17   4.3e-14       1     120 [.     163     310 ..     163     324 .. 0.84

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 5.7e-17
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHHHHH.HHHHHHHHHHTS...TSEEEEEETGGGHHHHH..TTCCCHHHHHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsell.skyvgesekk.irelfkeakeka...kpsilfiDEidalaksr..sgseseeeervvnqLlte 92 
                 vl++Gp G GKTlla+ +a+ l+v++  +++++l+   y+ge  +  i+ l+ +a       +  i+++DEid+lak +   g+++ ++e v++ Ll+ 
  CCD25506.1 163 VLVVGPSGSGKTLLASTLARILDVPIAITDCTQLTqAGYIGEDVEVcIERLLVNADFDVakaERGIIVLDEIDKLAKPSasIGTKDVSGEGVQQSLLKI 261
                 79*********************************66688887554145555555222244445************999977778899999******** PP

                 HHHTTTS.....................SSTEEEEEEESSGGGSTHHHH CS
         AAA  93 ldgvkkk.....................eskvivigatnrpdkldpall 120
                 ++g k +                     +s+++vi ++n   ++  a++
  CCD25506.1 262 IEGHKVEitterplkkgsddrgnqktpkKSETFVIDTSNILFMIMGAFV 310
                 ***************************9888999999999999988887 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       3.3   2.5e+03      12      56 ..      91     136 ..      74     141 .. 0.80
   2 !   32.2   0.0   1.1e-10   8.1e-08       1      63 [.     389     455 ..     389     464 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.3
                    HHHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHH CS
  ClpB_D2-small  12 lalkklekrlke.rgvelevtdealdalaekgydpeyGARpLrrii 56 
                    ++l++le+   e ++++ e + +  + + +   + + G R+L+r +
     CCD25506.1  91 KKLRELEEGKDEpDKFSAEADTDQSEPIFNGSSEAKAGLRNLQRQL 136
                    4778888877777888889999999999999999999999999865 PP

  == domain 2  score: 32.2 bits;  conditional E-value: 1.1e-10
                    SCHHHHHHHHHH...HHHHHHHHSCT.TTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHH CS
  ClpB_D2-small   1 LtkeelkkIvdl...alkklekrlke.rgvelevtdealdalaekgydpeyGARpLrriiqreiedp 63 
                    L++++l +I+++   al ++++ + +  gv+l vtd+al+++a+ +  + +GAR+Lr i++r ++++
     CCD25506.1 389 LQRDDLFHILKEpknALLDQYEYIFNqFGVRLCVTDKALQKIAQFALREGTGARGLRGIMERILLNV 455
                    8899*******999988899998866489*********************************99885 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   4.9e-09   3.7e-06       1      78 [.     162     238 ..     162     244 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 4.9e-09
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG-- CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEverae 78 
                 +vl+vGp+G+gK+ la  la+ l  ++ +  +t+ t++  +   +e+   ++ lv+  +  a  e  i+vlDE++++ 
  CCD25506.1 162 NVLVVGPSGSGKTLLASTLARILDVPIAITDCTQLTQAGYIGEDVEV-CIERLLVNADFDVAKAERGIIVLDEIDKLA 238
                 69********************************9999999999998.5566666666665666999********987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.3   1.8e-06    0.0013       5      55 ..     160     201 ..     156     249 .. 0.72
   2 ?   -2.0   0.0       5.5   4.1e+03      60      60 ..     451     451 ..     390     509 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.8e-06
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskd 55 
                 ++ ++v+G+sG+GKT+l+ +l++ l         +++++  +++++t    
  CCD25506.1 160 KSNVLVVGPSGSGKTLLASTLARIL---------DVPIAITDCTQLTQAGY 201
                 67899*******************9.........78888888888774443 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 5.5
      AAA_22  60 l 60 
                 +
  CCD25506.1 451 I 451
                 2 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0         4     3e+03       5      19 ..      46      60 ..      44      64 .. 0.87
   2 !   16.1   0.0   7.3e-06    0.0054      23      46 ..     161     184 ..     157     202 .. 0.88
   3 ?    3.0   0.0     0.075        56     101     119 ..     220     238 ..     216     243 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4
  Mg_chelatase  5 vkGqeeakraleiaa 19
                  ++Gqe+ k++l +a+
    CCD25506.1 46 IIGQETGKKVLSVAV 60
                  89***********97 PP

  == domain 2  score: 16.1 bits;  conditional E-value: 7.3e-06
  Mg_chelatase  23 HnlllvGppGsGKtmlakrlpsll 46 
                    n+l+vGp+GsGKt+la+ l+ +l
    CCD25506.1 161 SNVLVVGPSGSGKTLLASTLARIL 184
                   599******************999 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.075
  Mg_chelatase 101 eislahnGvLfLDElpefk 119
                   ++++a++G+++LDE+ ++ 
    CCD25506.1 220 DVAKAERGIIVLDEIDKLA 238
                   699***********98765 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   1.5e-06    0.0011      24      50 ..     160     186 ..     146     226 .. 0.78
   2 ?   -1.4   0.0       3.6   2.7e+03     131     151 ..     223     241 ..     210     252 .. 0.76

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 1.5e-06
      AAA_16  24 pelvllsGesGvGKsslvrellralek 50 
                  ++vl++G+sG+GK+ l+ +l+r l  
  CCD25506.1 160 KSNVLVVGPSGSGKTLLASTLARILDV 186
                 389*******************87654 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.6
      AAA_16 131 srderplvlvlDdlqwadeas 151
                 +  er  ++vlD+++++   s
  CCD25506.1 223 KA-ER-GIIVLDEIDKLAKPS 241
                 44.44.69*******887655 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       9.4     7e+03      33      48 ..      51      66 ..      45      74 .. 0.73
   2 !   12.6   0.0   0.00011     0.084      19      44 ..     157     182 ..     141     199 .. 0.81
   3 ?    3.9   0.0     0.052        39      89     106 ..     221     238 ..     218     247 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 9.4
                     SSHHHHHHHHHHHSTT CS
  Sigma54_activat 33 tGKellaraiheaskr 48
                     tGK++l+ a++++  r
       CCD25506.1 51 TGKKVLSVAVYNHYLR 66
                     8999999999986555 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.00011
                      CTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat  19 aktdlsvlitGesGtGKellaraihe 44 
                        ++++vl++G sG+GK+lla+++ +
       CCD25506.1 157 ELSKSNVLVVGPSGSGKTLLASTLAR 182
                      56789****************98765 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.052
                      HHHTTTSEEEEETGGGS- CS
  Sigma54_activat  89 fekadgGtlfLDeigelp 106
                      + ka+ G++ LDei +l 
       CCD25506.1 221 VAKAERGIIVLDEIDKLA 238
                      579***********9986 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.2   3.9e-06    0.0029       2      94 ..     160     319 ..     159     328 .. 0.72

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.9e-06
      AAA_24   2 klkiliyGpsgiGKTtlakelgpkplfi..................dtekGlksldadkfpdie...swedfldevvel.................... 59 
                 k ++l++Gpsg+GKT la++l  ++l +                  d+e    +l ++   d+      + +lde+++l                    
  CCD25506.1 160 KSNVLVVGPSGSGKTLLASTL-ARILDVpiaitdctqltqagyigeDVEVCIERLLVNADFDVAkaeRGIIVLDEIDKLakpsasigtkdvsgegvqqs 257
                 5689*****************.55555555558888877777777755555555444433333334455566666666677788888888888888888 PP

      AAA_24  60 ...........................aaeladyktlviDtideleelclaevirqnekaes 94 
                                            ++ +++ +t viDt + l  ++ a v   +++ + 
  CCD25506.1 258 llkiieghkveitterplkkgsddrgnQKTPKKSETFVIDTSNILFMIMGAFVGLDKHIVKR 319
                 88888889999999999999999999988888899999999999988888888555555455 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     5e-06    0.0037      17      83 ..     156     239 ..     147     243 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5e-06
                      HHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H................HHH.HHHTTTSEEEEEE-TT--H CS
  Sigma54_activ_2  17 aaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp................ldl.leqakggtLylkdiadlsk 83 
                      ++ sk++v+++G+ Gsgk+l A +L+      ++i+++ +l ++                 +d+ +++a+ g+++l +i++l k
       CCD25506.1 156 LELSKSNVLVVGPSGSGKTLLASTLARILDVPIAITDCTQLTQAGyigedvevcierllvnADFdVAKAERGIIVLDEIDKLAK 239
                      566899*********************999999*****9999866667777777766655533324568999999999999977 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.4   3.3e+03       6      25 ..      42      62 ..      40      70 .. 0.78
   2 !   15.4   0.1   1.6e-05     0.012      34      75 ..     161     202 ..     148     243 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 4.4
      RuvB_N  6 leey.igqekvkeklkifiea 25
                l+ey igqe+ k+ l++++  
  CCD25506.1 42 LDEYiIGQETGKKVLSVAVYN 62
                677736999999999999865 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 1.6e-05
      RuvB_N  34 dhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdl 75 
                   vl++Gp G Gkt la+ +a+ l+v + it    l +ag +
  CCD25506.1 161 SNVLVVGPSGSGKTLLASTLARILDVPIAITDCTQLTQAGYI 202
                 579****************************99999998754 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.6e-05     0.019      45      68 ..     158     181 ..     123     185 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.6e-05
   IstB_IS21  45 ekkenivllGpsGvGKshlaialg 68 
                  +k n++++GpsG GK+ la +l+
  CCD25506.1 158 LSKSNVLVVGPSGSGKTLLASTLA 181
                 4689****************9998 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.2   3.9e-05     0.029      55     135 ..     158     239 ..     146     245 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.9e-05
                 CSS-EEEEEESSTSTHHHHHHHHHHHSSSEE.EEESSSSSSSHSSSEEEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTC CS
         MCM  55 rgdinvllvgdpgtaKsqlLkyveklaprav.ytsgkgssaagLtaavvrdeetgefvleaGalvladkGvcciDefdkmke 135
                  ++ nvl+vg +g +K+ l  +++++++  +  t  ++ ++ag     v    ++ +v     +  a++G++++De+dk  +
  CCD25506.1 158 LSKSNVLVVGPSGSGKTLLASTLARILDVPIaITDCTQLTQAGYIGEDVEVCIERLLVNADFDVAKAERGIIVLDEIDKLAK 239
                 5789**********************9987624667899*******99988888777777778999*************987 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00033      0.25       3      24 ..     163     184 ..     161     188 .. 0.89
   2 ?    0.8   0.0      0.55   4.1e+02      78      99 ..     222     243 ..     211     270 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00033
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                 v++ G++GsGKT L+  la+ +
  CCD25506.1 163 VLVVGPSGSGKTLLASTLARIL 184
                 89**************999765 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.55
                 CSCCCEEEEEE-STT-SS-TCH CS
       NACHT  78 elperlLlilDglDelvtdlgq 99 
                 + +er  ++lD +D+l++    
  CCD25506.1 222 AKAERGIIVLDEIDKLAKPSAS 243
                 6789999*********985444 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   4.7e-05     0.035     101     153 ..     136     184 ..     115     197 .. 0.69
   2 ?   -3.7   0.1       6.6     5e+03      51      78 ..     317     346 ..     314     350 .. 0.61

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 4.7e-05
       T2SSE 101 keltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkei 153
                  ++++++ + + al ++ ++ l+ +   + ++lv G+ gsGKt l+ +l  ++
  CCD25506.1 136 LNISFNEEADNTAL-DAKDDDLELS---KSNVLVVGPSGSGKTLLASTLARIL 184
                 44455544444333.3445556777...99**************999987766 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 6.6
       T2SSE  51 isriaalak..ldiseerplqdarlpekgv 78 
                 ++ri  + +   +is+e+  q ar++++ +
  CCD25506.1 317 VKRINRMKNidTEISKENENQKARFSNTIE 346
                 555555543116788888888888885544 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0     0.001      0.76      12      33 ..     158     179 ..     151     186 .. 0.87
   2 ?    1.2   0.0      0.37   2.7e+02     123     136 ..     227     240 ..     210     257 .. 0.84
   3 ?   -1.8   0.0         3   2.3e+03     138     170 ..     316     346 ..     286     350 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.001
                 HTTCEEEEEESTTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  12 lgggdvlvaaeTGsGKTlafli 33 
                 l++ +vlv ++ GsGKTl ++ 
  CCD25506.1 158 LSKSNVLVVGPSGSGKTLLAST 179
                 5788**************9875 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.37
                 EEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxx RF
        DEAD 123 rflVlDEadrlldq 136
                  ++VlDE+d+l + 
  CCD25506.1 227 GIIVLDEIDKLAKP 240
                 579*******9865 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 3
                 THHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 138 fsdfinrilnqlpqitcdgklqrqvivlSATlp 170
                   + inr+ n   +i+++ +  +q   +S T++
  CCD25506.1 316 IVKRINRMKNIDTEISKENE--NQKARFSNTIE 346
                 55567775555555544444..45888998886 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   8.5e-05     0.063      12      36 ..     161     185 ..     152     244 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.5e-05
                 SEEEEEESTTSSHHHHHHHHTTSS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagllk 36 
                 + v +vG++G+GK+ L+++la+ l+
  CCD25506.1 161 SNVLVVGPSGSGKTLLASTLARILD 185
                 46789***************99876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   7.5e-05     0.056       2      24 ..     163     185 ..     163     209 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.5e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklg 24 
                 vl+vG++GsGK+ la  l++ l+
  CCD25506.1 163 VLVVGPSGSGKTLLASTLARILD 185
                 799**************997665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   5.1e-05     0.038      32      58 ..     159     185 ..     143     234 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.1e-05
       AAA_7  32 nkkpvllvGptGtGKtviikdllkkld 58 
                 +k +vl+vGp+G+GKt+++++l + ld
  CCD25506.1 159 SKSNVLVVGPSGSGKTLLASTLARILD 185
                 6889***************99998887 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   9.8e-05     0.073       4      78 ..     162     239 ..     159     271 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 9.8e-05
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe...kllelileklke......ekktylflDEiqevpe 78 
                  ++++G+  +GKT l+ +l++ l      i   ++ + +++ +  ++    +++l+ +   +       ++ +++lDEi ++ +
  CCD25506.1 162 NVLVVGPSGSGKTLLASTLARILD---VPIAITDCTQLTQAGYIGEDvevCIERLLVN---AdfdvakAERGIIVLDEIDKLAK 239
                 5899***************98777...7889999999888776644322223344444...144566689999******99854 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00016      0.12      16      38 ..     155     176 ..     148     186 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00016
      AAA_29  16 tieidlkgatlltGpsGsGKSTl 38 
                 ++e++ + ++l++GpsGsGK+ l
  CCD25506.1 155 DLELSKS-NVLVVGPSGSGKTLL 176
                 5566644.6***********755 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       6.1   4.6e+03      40      40 ..      99      99 ..      51     157 .. 0.57
   2 ?   12.2   0.0   0.00026      0.19       1      56 [.     163     233 ..     163     341 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.1
      AAA_18 40 e 40
                +
  CCD25506.1 99 G 99
                1 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00026
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...............gvnlrdvakenglllevdpealdeskrldedk 56 
                 +l+ G++G+GKt la  L++ l +                 +  +v+ e+ l+  +++ a  e  +++ d 
  CCD25506.1 163 VLVVGPSGSGKTLLASTLARILDVpiaitdctqltqagyIGEDVEVCIERLLVNADFDVAKAERGIIVLDE 233
                 799***************99987766666656555554422333344444444444444344444444444 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00027       0.2      19      40 ..     160     181 ..     146     184 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00027
                 -SEEEEE--TTSSTTHHHHHHH CS
        PhoH  19 ndivfaiGpaGtGKtylavala 40 
                 ++ v ++Gp+G+GKt+la +la
  CCD25506.1 160 KSNVLVVGPSGSGKTLLASTLA 181
                 556889************9887 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   2.6      0.23   1.7e+02     106     193 ..      24     137 ..      11     145 .. 0.52
   2 ?    7.6   1.6    0.0065       4.9      14      40 ..     155     181 ..     149     411 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.23
      AAA_23 106 kaklellei...deleqfisellgskki...ilnlilflgqer....feefelkdkke......rleelekeleeledekkllekl..........eqe 178
                  a+++++++   +el+ f++e++  ++     l++ ++ +  r    + ++elk++ke      + e+  +elee +de +++ ++          +  
  CCD25506.1  24 LAQKRWTKVpspKELKGFLDEYIIGQETgkkVLSVAVYNHYLRindkQRKLELKREKEiireglAREKKLRELEEGKDEPDKFSAEadtdqsepifNGS 122
                 444555555555899999999777665555544555555555532221123333333345555544444444444444444444444454555665344 PP

      AAA_23 179 kekekeleeleeele 193
                  e ++ l +l+++l+
  CCD25506.1 123 SEAKAGLRNLQRQLN 137
                 445556777776665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0065
      AAA_23  14 eidFskgltlItGpNGaGKTTildAik 40 
                 ++++sk  +l++Gp G+GKT +   + 
  CCD25506.1 155 DLELSKSNVLVVGPSGSGKTLLASTLA 181
                 689999999***********8876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1018  (0.0567795); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.69u 0.32s 00:00:01.01 Elapsed: 00:00:00.47
# Mc/sec: 3373.31
//
Query:       CCD25507.1  [L=241]
Description: hypothetical protein NDAI_0F01890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    0.00022   21.3   1.3    0.00022   21.3   1.3    1.7  2  FANCL_C       FANCL C-terminal domain
  ------ inclusion threshold ------
      0.063   13.4   3.5        0.2   11.8   0.3    2.3  2  Zf_RING       KIAA1045 RING finger


Domain annotation for each model (and alignments):
>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.1     1e+04      18      25 ..     138     145 ..     130     148 .. 0.57
   2 !   21.3   1.3   2.4e-08   0.00022       2      66 ..     151     223 ..     150     227 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.1
                 ---B--S- CS
     FANCL_C  18 vpdisCdn 25 
                  + +sC n
  CCD25507.1 138 NACQSCKN 145
                 34445554 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 2.4e-08
                 --S-SSS--SS-....TT-----.B--S-TT----B-SGGGHHHH...HHHHSSS-TTT--EEE-TTT-SEEE CS
     FANCL_C   2 eveCgiCyayrl....dsgevpd.isCdnekCnkkfHsaCLkeWl...rslkesrqsfdvlfGeCPyCkkkis 66 
                 e+ CgiC   ++    d +  p+   C+++ C+ + H  CL+ ++   ++l+ ++q +    G+CP C + ++
  CCD25507.1 151 EMPCGICERVFDytssDMDLKPHlAFCNENGCKFIAHLRCLHRYFlddEQLRIGKQNLIPKDGKCPDCAALLN 223
                 689****7666665566666776256******************944445677889999999******98776 PP

>> Zf_RING  KIAA1045 RING finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   2.3e-05       0.2       5      30 ..     137     162 ..     134     167 .. 0.90
   2 ?    2.0   0.2     0.025   2.2e+02      25      66 ..     182     221 ..     177     226 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.3e-05
     Zf_RING   5 delCeiCevytaeelypCRvCtkvfH 30 
                 ++ C+ C+ +     +pC +C++vf 
  CCD25507.1 137 ENACQSCKNELLAGEMPCGICERVFD 162
                 789*********************95 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.025
     Zf_RING  25 CtkvfHegClrklgylqdesalellkrAktetGWsCaeCdnl 66 
                 C+ + H  Cl++  y  d+++l + k+        C +C  l
  CCD25507.1 182 CKFIAHLRCLHR--YFLDDEQLRIGKQNLIPKDGKCPDCAAL 221
                 778899*****9..7778888888888877777788888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1852.67
//
Query:       CCD25508.1  [L=943]
Description: hypothetical protein NDAI_0F01900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.3e-122  409.4   0.0   3.4e-122  408.8   0.0    1.2  1  Glyco_hydro_31   Glycosyl hydrolases family 31
      1e-23   83.4   1.8    2.4e-23   82.2   0.1    2.6  3  Gal_mutarotas_2  Galactose mutarotase-like
    2.1e-07   31.1   0.1    1.7e-06   28.2   0.0    2.5  2  DUF5110          Domain of unknown function (DUF5110)


Domain annotation for each model (and alignments):
>> Glyco_hydro_31  Glycosyl hydrolases family 31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.8   0.0  5.6e-126  3.4e-122       2     440 .]     361     805 ..     360     805 .. 0.91

  Alignments for each domain:
  == domain 1  score: 408.8 bits;  conditional E-value: 5.6e-126
                     EEE-SSHHHHHHHHHHHH-------GGGGSEEEE-TT--SHHHHHHHHHHHHHTT--EEEEEESCGGSBTTCCTB-.TTTSS-HHHHHHHHHHTT CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31   2 vflGptpkevvkqyteltGrpalpPrwalGfhqsrygykdeeeveevvdkfreagiPldvivlDidymdkrkdftwdkerFpdpkemvdelhekg 96 
                     +flG++p++++++yteltGrp lp   ++G+hq+r++y+de +v +v +++++agiP+d ++lD +y d++++ftw++++Fp+pk++++ l + g
      CCD25508.1 361 IFLGESPADIINNYTELTGRPDLPLLSSIGYHQCRWNYNDELDVLTVEAEMDKAGIPFDFLWLDLEYTDNKQYFTWKPDSFPNPKRLLNVLDKLG 455
                     689****************************************************************************************888* PP

                     -EEEEEE-SEE.E.-TTSHHHHHHHHTTSBECCCCCS.TCEC.TSSEEEEB-TTSHHHHHHHHHHHHHHHCTCT--E..EEE-STTTB.SCCCCH CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
  Glyco_hydro_31  97 vklvvivdpaiskqeeeyeafdegkekgvflknkdgs.ykgk.wpgstafpDftnpearewwkkelkkflldlgvdg..lwiDmnepsnfeegsd 187
                      +l v +dp+++   ++y + + ++++++ +k+ +g+ +kg+ wpg + +++ +++  r+ w++ + k+++  gv    +w+Dmneps+f+ +++
      CCD25508.1 456 RQLAVLIDPHLK---DNYFVSKIVAQENAAVKDCNGNiFKGQcWPGLSLWIETFSELGRKSWSR-FFKNFVPEGVTNlhIWNDMNEPSIFSGPET 546
                     ***********4...47999999999***********99999******************9995.55555654555545*********9987775 PP

                     H.HHCCCTSCETTCC.HHHHCCCHHHHHHHHHHHHHHHHTT..TST-EEEESSEETTGGGCTEEE--S-BSSHHHHHHHHHHHHHHHTTT--SEE CS
                     x.xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 188 s.eekeaketkaags.hydvhnlygllmakatyeglkekkp..kkrpfiltRstfaGsqryaahWsGdnassWeslresipallsfslsGvpfwg 278
                     + +    k+  ++g  +++vhnlygl+ ++++y+++ke+ +  kkrpfiltR++f+Gsqr aa+W+Gdn ++W+ l  sip++l+ +++G+pf+g
      CCD25508.1 547 TaP----KDLIHDGFeERSVHNLYGLTVHETSYNAMKEVYSaeKKRPFILTRAFFSGSQRTAATWTGDNVANWDYLGVSIPMILTNNIMGMPFIG 637
                     533....222344446899**************99999988889*************************************************** PP

                     EECT-SG.HCHHHHHHHHHHHHTTSSSEEE--STTSS--SHHHHCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH---SEE-HHHH-TT-CCCC CS
                     xxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_31 279 aDigGFe.ntteelyaRWvqlGafsPffrnHsskdakrqepwafgeeveeaarkaielRyrLlPylYtlfyeahetglpvvrplflefpedektf 372
                     aD+ GF+ n+++el++RW+q+G+++Pffr H++ d++r+ep++f+e+v++++r+a++lRy LlP +Yt+f+e++ +g+p++rp+f+e p+  +++
      CCD25508.1 638 ADVAGFAgNPEPELLVRWYQAGLWYPFFRAHAHIDSIRREPYLFEEPVRSIIRDAVKLRYILLPTFYTAFRESNLNGSPIMRPMFYEKPQYGELY 732
                     *******9**********************************************************************************99*** PP

                     C--S-EEETTT.EEE----STT-SEEEEEE-SSEEEETTT--EEES.SEEE.EEE--..TTSS-EEEETTEEE CS
                     xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxx..xxxxxxxxxxxxxx RF
  Glyco_hydro_31 373 diddqfmfGds.LLvaPvleeeatsvevyLPggkWydfwtgekyeg.gqtv.eltap..ldeiplfvraGaIi 440
                     ++d+qf++Gds +Lv+P++++++ +++v +  g +yd+ + ++++  g++v ++t+p  l++ip f+ +G+Ii
      CCD25508.1 733 SVDTQFFLGDSgILVKPIVHANEIETQVIFTPGVYYDLDSLSVLRInGNDVsSVTIPspLEKIPSFIEGGHII 805
                     **********99*******99988999999866*****666555554334455555432777**********9 PP

>> Gal_mutarotas_2  Galactose mutarotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.9   1.7e+04      24      35 ..     237     247 ..     230     250 .. 0.71
   2 !   82.2   0.1     4e-27   2.4e-23       2      66 .]     266     337 ..     265     337 .. 0.97
   3 ?   -1.9   0.0      0.73   4.3e+03      27      54 ..     610     632 ..     600     635 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.9
                      -----TS-HCC. CS
  Gal_mutarotas_2  24 wntdafgyeaes 35 
                      + +d+f+y++++
       CCD25508.1 237 F-KDDFEYSKDD 247
                      4.6899999886 PP

  == domain 2  score: 82.2 bits;  conditional E-value: 4e-27
                      -EEEEEES-SS-SS-TTE....EEEE-----TS-HCC.CTS-SCEEEEEEEE...TCEEEEEE--SSSEEEE CS
  Gal_mutarotas_2   2 ehvyGlGEkagplnlrgt....ryrlwntdafgyeaessdplYgsiPfmisl...segyGvfvdnpaetwfD 66 
                      ++vyG++E+a +l+l++t    +yrl+n+d+f+y+ +s++p+Yg+iP+mi+    +++ G+f++n+a+tw+D
       CCD25508.1 266 QNVYGIPEHANSLRLKDTtesePYRLFNVDVFEYNLNSTMPMYGAIPLMIAAnpnKQSAGLFWLNSADTWID 337
                      68*****************************************************888*************9 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.73
                      --TS-HCC.CTS-SCEEEEEEEETCEEE CS
  Gal_mutarotas_2  27 dafgyeaessdplYgsiPfmislsegyG 54 
                      d+ + +    d l +siP++++ ++ +G
       CCD25508.1 610 DNVA-N---WDYLGVSIPMILT-NNIMG 632
                      5543.3...348899****999.77666 PP

>> DUF5110  Domain of unknown function (DUF5110)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         1   6.2e+03      40      57 ..      99     116 ..      92     124 .. 0.73
   2 !   28.2   0.0   2.8e-10   1.7e-06      10      40 ..     833     863 ..     822     881 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1
                 C-STTCEEEEEEEEEE-T CS
     DUF5110  40 adggkltltigpreGsyk 57 
                 ++++++++ti++ + + k
  CCD25508.1  99 NTSNSIRFTIDENRSNLK 116
                 567899999998877766 PP

  == domain 2  score: 28.2 bits;  conditional E-value: 2.8e-10
                 TTSEEEEEEE-SSSSCCCCTBEEEEEEEEEC CS
     DUF5110  10 gegsftlYeDDGetydYekGeyaktkftvea 40 
                 g+++ +lY DDGet+ Y++G + +t+f++++
  CCD25508.1 833 GNANGKLYLDDGETFHYQNGNFIETEFNFKN 863
                 678899***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       401  (0.022366); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.29s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 6262.45
//
Query:       CCD25509.1  [L=164]
Description: hypothetical protein NDAI_0F01910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
          1    9.3   3.4        1.2    9.2   3.4    1.1  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr
          8    5.1   5.5        9.4    4.9   5.5    1.1  1  Presenilin      Presenilin


Domain annotation for each model (and alignments):
>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.4   0.00013       1.2      70     197 ..       6     138 ..       1     149 [. 0.52

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00013
                     HHHHHHHHHHHHHH..H-S-S---HHHHHHHTTHHHHHHC--------------.--------------------------------------SS CS
  Neur_chan_memb  70 lsivetvfVlnvhh..rsprthtmpawvrkvfldklprllfmkrpsevkdnekklssgasseaeelilskskseskkaklseeqgsekastckck 162
                      si+ + +V  +    +  + h  ++     + +k+p++   +  s  + n+ k ++  s+++    +++sk++ ++++ s++ + +++s  + +
      CCD25509.1   6 TSILFVKIVGSIKEhiKMSSAHGQRSYLTDTLPHKIPNINQTSYSSPPQWNQPKSQTRFSKTRRPRFTNNSKPHRNFKHVSKRRSYQNSSRNQSN 100
                     56666666666644235556677777777777777777766655544444444434444444444444444444455555555444444444444 PP

                     ---TTGGG--........-----TTTTTHHHHHHHHHH CS
  Neur_chan_memb 163 ckegeeaspstqlsk...eelspelkkavegvkyiadh 197
                     +++++ +++s+   +   +  s++ k  v++v++i ++
      CCD25509.1 101 QRNTRYKGSSNISGQghdNATSKAPKPGVHQVQHIEEE 138
                     44433333332222244477777778888888888765 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.5    0.0011       9.4     216     302 ..      49     132 ..      27     153 .. 0.45

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0011
  Presenilin 216 Ysatvvvlaaeekkaevaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessess 302
                 Ys+ + +++ +++   ++ s++++ + +++++ +++ k+ +++++ +++s+++s++++++ + ss+ + + + ++++k+ ++  ++ 
  CCD25509.1  49 YSSPPQWNQPKSQ---TRFSKTRRPRFTNNSKPHRNFKHVSKRRSYQNSSRNQSNQRNTRYKGSSNISGQGHDNATSKAPKPGVHQV 132
                 7777777754443...33333333333333333333333333333333333333333333333333333333333333322222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1111  (0.0619666); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1208.68
//
Query:       CCD25510.1  [L=241]
Description: hypothetical protein NDAI_0F01920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.59    9.4   3.6       0.82    8.9   3.6    1.2  1  Peptidase_U4  Sporulation factor SpoIIGA


Domain annotation for each model (and alignments):
>> Peptidase_U4  Sporulation factor SpoIIGA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.6   4.5e-05      0.82      51     111 ..      97     157 ..      72     198 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 4.5e-05
  Peptidase_U4  51 flpklesillsillkilvsllmvliafgpkslkeflkalllfylvsfllgGilfalsyll.....l 111
                   ++     +l+sil+ ++ ++  +++ f++++lk f+ +  + ++v +++g ++++          l
    CCD25510.1  97 VI-----MLFSILTACTTPVTTIMTIFSKRGLKSFAYTATVTLFVYMACGALWIGKERCStsplaL 157
                   22.....5778999999999999999***********************99999876633334331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1832.11
//
Query:       CCD25511.1  [L=564]
Description: hypothetical protein NDAI_0F01930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.4e-160  535.1  33.2   1.6e-160  534.9  33.2    1.0  1  Sugar_tr  Sugar (and other) transporter
    5.4e-33  114.4  24.1    5.4e-33  114.4  24.1    2.0  2  MFS_1     Major Facilitator Superfamily
     0.0037   15.7   2.6     0.0037   15.7   2.6    1.7  2  MFS_3     Transmembrane secretion effector
  ------ inclusion threshold ------
        1.8    8.9  11.2         20    5.5   5.4    3.9  3  DUF1772   Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  534.9  33.2  3.5e-164  1.6e-160       1     452 []      62     522 ..      62     522 .. 0.99

  Alignments for each domain:
  == domain 1  score: 534.9 bits;  conditional E-value: 3.5e-164
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++l++a+gg++ g+dtg+ig+f+++++++++fg ++ +++k+ s+v++gl+vsif+vG++iGs+f+g lgd +GR+k+++++a ++++g+v+q+a+   
  CCD25511.1  62 MCLMVAFGGFISGWDTGTIGGFMAQTDYINRFGSTHPSGTKYMSKVRTGLLVSIFNVGCAIGSVFLGRLGDSIGRRKGIVVGASIYIVGIVIQIASI-- 158
                 69***********************************************************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  ++ ++++gR++ G+g G++ vl+Pm+isE++pk+lRg+lvs+yql++tfGi++++++++g+++++n+++wr++lgl++++al+++ +++++PESPryl
  CCD25511.1 159 DKWFQYFIGRIIGGLGSGAIAVLSPMLISEVSPKHLRGTLVSCYQLMVTFGIFLGYCTNYGTKNYNNSVQWRVPLGLCFAWALVMIGAMFLVPESPRYL 257
                 56************************************************************************************************* PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksllv 292
                 vekg  eeak+++ak+++++ +d++  +e++  + ++++e    +asw el+ +kt v+qr+l+gvv+ ++qqltG+n+++yy++ +f+ +gl++s+++
  CCD25511.1 258 VEKGLIEEAKRSVAKSNKVTVDDPATIQEVELVQIAVDAEreagTASWAELFHTKTkVFQRTLMGVVVLALQQLTGCNYFFYYGTLVFSAVGLEDSFQT 356
                 *************************9999999998888888899******************************************************* PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS........CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvR 384
                 +i++g+vnf++tfva+++vd+ GRRt+ll+Gaagm +c+v+++  +v+ l+++++     k+a++++ivf ++fi++fa++w+p+p+v++sE fp++v+
  CCD25511.1 357 SIVFGIVNFASTFVALYVVDKYGRRTCLLWGAAGMVCCMVVFAsvGVTRLWPHGKgngssKGAGNCMIVFSCFFIFCFATTWAPIPFVIISESFPLRVK 455
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 385 skalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +k++a+ +++n ++nf i++++p+it+ai  +y+++vf+g++v+++ +vf fvpetkg++le+++ ++
  CCD25511.1 456 AKGMALGTVSNQMWNFCIGFFTPFITGAID-FYYGYVFMGCLVFAYCYVFAFVPETKGLQLEDVNVMW 522
                 ******************************.***********************************98 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4  24.1   1.2e-36   5.4e-33       1     346 [.      66     467 ..      66     471 .. 0.80
   2 !    5.5   8.7    0.0015       6.8      89     178 ..     424     511 ..     423     537 .. 0.78

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 1.2e-36
       MFS_1   1 lllaaflsalarsilgpalpl.alaedlg.........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwl 87 
                 +++++f+s+++ +++g ++ +  + + +g         +s+   gll++++ +g+a++s++lGrl+d +Grr+ +++g+ ++++g +++ +a    ++ 
  CCD25511.1  66 VAFGGFISGWDTGTIGGFMAQtDYINRFGsthpsgtkyMSKVRTGLLVSIFNVGCAIGSVFLGRLGDSIGRRKGIVVGASIYIVG-IVIQIAsiDKWFQ 163
                 589*****************99998999977777777777777******************************************.555544446677* PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg....Wravfyilaivsllafvlfllllpeepperkrk 182
                  +++r++ Glg+ga++ ++  li++++pk  rg  ++++++++ +G+ lg+    + + +++    Wr++  ++ + +l+++  +++l+pe+p+    k
  CCD25511.1 164 YFIGRIIGGLGSGAIAVLSPMLISEVSPKHLRGTLVSCYQLMVTFGIFLGYCT-NYGTKNYNnsvqWRVPLGLCFAWALVMIG-AMFLVPESPRYLVEK 260
                 **************************************************544.555555557888**************944.336666666666666 PP

       MFS_1 183 spkeee...............................kgtgpaplvpawkallkdp..vl...w.illialllfffgfsglltllplylqevlgls.gl 243
                   +ee                                   g a++++    l++ +  v+   +  +++ +l   +g ++++++ +l   +  gl  + 
  CCD25511.1 261 GLIEEAkrsvaksnkvtvddpatiqevelvqiavdaeREAGTASWAE----LFHTKtkVFqrtLmGVVVLALQQLTGCNYFFYYGTLV-FSAVGLEdS- 353
                 66666588899999888899988888888888776655555555555....4444422222221345555555555666677777775.788888844. PP

       MFS_1 244 llaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..........ssavllllvlvl...iGfglgfv.fpsllalasdl 328
                 ++++++++++ +++    ++a +++d++grr+ ll++ ++++++ + +a ++vt          ss+ ++ +++v+   + f+++++  p+ ++++s++
  CCD25511.1 354 FQTSIVFGIVNFAS---TFVALYVVDKYGRRTCLLWGAAGMVCCMVVFASVGVTrlwphgkgngSSKGAGNCMIVFscfFIFCFATTwAPIPFVIISES 449
                 88887777777777...999**************************************99999977777777666666344477777678889999*** PP

       MFS_1 329 appeeagtasglfntags 346
                 +p +  ++ ++l ++ ++
  CCD25511.1 450 FPLRVKAKGMALGTVSNQ 467
                 **9999999999888776 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0015
       MFS_1  89 lvlrvlqGlgagalf.pagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeeppe 178
                 +v+ ++  ++ ++ + p+  ++i++ fp + ++++++l ++++++   +   + ++++ ++ + + +++++ + +  +    ++ ++++++
  CCD25511.1 424 IVFSCFFIFCFATTWaPIPFVIISESFPLRVKAKGMALGTVSNQMWNFCIGFFTPFITGAIDFYYGYVFMGCLVFAYCY---VFAFVPETK 511
                 5666666666655551667899******************************************************966...444444444 PP

>> MFS_3  Transmembrane secretion effector
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.6   8.3e-07    0.0037     256     396 ..     109     251 ..     104     265 .. 0.83
   2 ?   -2.0   0.1       0.2     9e+02      67      95 ..     373     401 ..     363     407 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 8.3e-07
       MFS_3 256 yGillgalGvGAilgalllsrLRerlss.erlvllaavalAlvllslalasslwvavlvlllgG..aaWitalstlnvavqlavPrWvvgRalavYltv 351
                  G+l++ + vG  +g+++l rL ++++  + +v  a++ +  +++++a  ++ ++ ++  ++gG  ++ i++ls +   +  ++P+ ++g  ++ Y+ +
  CCD25511.1 109 TGLLVSIFNVGCAIGSVFLGRLGDSIGRrKGIVVGASIYIVGIVIQIASIDKWFQYFIGRIIGGlgSGAIAVLSPML--ISEVSPKHLRGTLVSCYQLM 205
                 59999*********************872569999***********************9999863267888888775..5579***************9 PP

       MFS_3 352 laGglaaG.sllWGavaealsvtlaLlaaaaalllaaaillllklp 396
                 ++ g+ +G    +G+   + sv++ + ++ +   + ++i+ ++ +p
  CCD25511.1 206 VTFGIFLGyCTNYGTKNYNNSVQWRVPLGLCFAWALVMIGAMFLVP 251
                 9999999934679*99999999998776665555555555555555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.2
       MFS_3  67 alaDnfdrRkvllavqlllalvsvlltvl 95 
                  + D++ rR  ll++ + ++   v+ +++
  CCD25511.1 373 YVVDKYGRRTCLLWGAAGMVCCMVVFASV 401
                 57899999999999988877655544433 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.43   1.9e+03      46      79 ..     120     153 ..      71     158 .. 0.68
   2 ?    2.3   0.2     0.042   1.9e+02      45      96 ..     206     269 ..     160     313 .. 0.66
   3 ?    5.5   5.4    0.0044        20      36      80 ..     357     398 ..     287     409 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.43
     DUF1772  46 salafayla.......araasrgarllylaaaallllsivp 79 
                 +       a       +   s g+r+ ++++a++++++iv+
  CCD25511.1 120 C-------AigsvflgRLGDSIGRRKGIVVGASIYIVGIVI 153
                 2.......223333445556666677777788889988875 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.042
     DUF1772  45 lsalafa.yla....araasrgarllylaaaallllsivpyTllvmvPtN.nkLaal........k 96 
                 ++   f+ y +    ++  ++ ++++ l+  ++++ ++v + +++ vP   + L ++        +
  CCD25511.1 206 VTFGIFLgYCTnygtKNYNNSVQWRVPLG--LCFAWALVMIGAMFLVPESpRYLVEKglieeakrS 269
                 33333443444667788999999999965..44555578888888888554445554444434441 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0044
     DUF1772  36 kavfpplallsalafaylaaraasrgarllylaaaal.lllsivpy 80 
                 + vf+ + ++s+ +++y++ ++ +r+++ll+ +aa++ +++  v++
  CCD25511.1 357 SIVFGIVNFASTFVALYVV-DKYGRRTCLLW-GAAGMvCCM--VVF 398
                 4577777777777777666.8999999****.555553774..433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3967.64
//
Query:       CCD25512.1  [L=551]
Description: hypothetical protein NDAI_0F01940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.3e-161  536.8  32.6     5e-161  536.6  32.6    1.0  1  Sugar_tr  Sugar (and other) transporter
    1.3e-33  116.4  21.5    1.3e-33  116.4  21.5    2.1  2  MFS_1     Major Facilitator Superfamily
    0.00045   18.8   1.7    0.00077   18.0   1.7    1.3  1  TRI12     Fungal trichothecene efflux pump (TRI12)
  ------ inclusion threshold ------
       0.31   11.4   7.8        2.1    8.6   2.3    3.9  2  DUF1772   Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  536.6  32.6  1.1e-164    5e-161       1     452 []      49     509 ..      49     509 .. 0.99

  Alignments for each domain:
  == domain 1  score: 536.6 bits;  conditional E-value: 1.1e-164
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 ++l++a+gg++ g+dtg+ig+f+++++f+++fg +++++s++ s+v++gl+vsif++G++iGs+f+g lgd++GR+k++++a+ ++++g+v+q+a+   
  CCD25512.1  49 MCLMVAFGGFILGWDTGTIGGFMAQTDFIRRFGSKHRDGSHYLSKVRIGLLVSIFNIGCAIGSVFLGRLGDTIGRRKGIVVAVSIYMVGIVIQIASV-- 145
                 69***********************************************************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                 +++ ++++gR+++G+g+G++ vl+Pm+isE++pk+lRg+lvs+yql++tfGi++++++++g++k sn+++wr++lgl++++al++l +++++PESP+yl
  CCD25512.1 146 KKWFQYLIGRIISGLGAGCIAVLSPMLISEVSPKHLRGTLVSCYQLMVTFGIFLGYCTNYGTKKHSNSVQWRVPLGLCFAWALFMLGAMFLVPESPHYL 244
                 67************************************************************************************************* PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH.........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THHHHH CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee....kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenlglsksllv 292
                 v++g  eeak+++ak+++++ +d+++ +e+++ + ++e+e       w el+++k+ ++qr+++gvvl  +qqltG+n+++yy++ +f+ +gl++s+++
  CCD25512.1 245 VKNGLIEEAKRSVAKSNKVTIDDPAVIQEVEMVQIAVEAEhaggPSRWMELFETKNkIFQRVVVGVVLLGLQQLTGVNYFFYYGTIVFKAVGLEDSFQT 343
                 **************************************99999999***************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH....HHHHTTSS........CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTTTH CS
    Sugar_tr 293 tiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg..ivalllvaks.....kaasivaivfialfialfalgwgpvpwvlvsElfpqsvR 384
                 +i++g+vnf++tfva+++vd+ GRRt+ll+Gaagm +c+v+++  +v+ l+++++     k+a++++ivf ++fi++fa++w+p+p+v++sE fp++v+
  CCD25512.1 344 SIVFGIVNFASTFVALYVVDKYGRRTCLLWGAAGMVCCMVVFAsvGVTRLWPHGKgngssKGAGNCMIVFSCFFIFCFATTWAPIPFVIISESFPLRVK 442
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 385 skalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 +k++a+ +++n ++nf i++++p+it+ai+ +y+++vf g++v++ ++vf+fvpetkg++l++i+ ++
  CCD25512.1 443 AKGMALGTVSNQMWNFCIGFFTPFITGAIN-FYYGYVFLGCLVFSWFYVFIFVPETKGLQLDDINVMW 509
                 ******************************.***********************************98 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4  21.5   2.9e-37   1.3e-33       1     345 [.      53     453 ..      53     455 .. 0.82
   2 !    6.5  10.2   0.00075       3.4      89     180 ..     411     500 ..     410     531 .. 0.79

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 2.9e-37
       MFS_1   1 lllaaflsalarsilgpalpl.alaedlg.........ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwl 87 
                 +++++f+ +++ +++g ++ +    + +g         +s+  igll++++ +g+a++s++lGrl+d +Grr+ +++++ ++ +g +++ +a    ++ 
  CCD25512.1  53 VAFGGFILGWDTGTIGGFMAQtDFIRRFGskhrdgshyLSKVRIGLLVSIFNIGCAIGSVFLGRLGDTIGRRKGIVVAVSIYMVG-IVIQIAsvKKWFQ 150
                 589*****************99999999999999988899999******************************************.555544458888* PP

       MFS_1  88 llvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrks 183
                  l++r+++Glgag+++ ++  li++++pk  rg  ++++++++ +G+ lg+        + +   Wr++  ++ + +l+++  +++l+pe+p+   ++ 
  CCD25512.1 151 YLIGRIISGLGAGCIAVLSPMLISEVSPKHLRGTLVSCYQLMVTFGIFLGYCTNYGTKKHSNsvqWRVPLGLCFAWALFMLG-AMFLVPESPHYLVKNG 248
                 **************************************************666554443333788**************933.3366778888887777 PP

       MFS_1 184 pkeee...............................kgtgpaplvp...awkallkdpvlwillialllfffgfsglltllplylqevlgls.glllag 247
                  +ee                                +  gp+ + +      +++ + v+  +++  l   +g+++++++ ++   +  gl  + ++++
  CCD25512.1 249 LIEEAkrsvaksnkvtiddpaviqevemvqiaveaeHAGGPSRWMElfeTKNKIFQRVVVG-VVLLGLQQLTGVNYFFYYGTIV-FKAVGLEdS-FQTS 344
                 7777688888888888888888888888888887776667777777555455555555443.4444444455666677777775.888888844.7777 PP

       MFS_1 248 lllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt..........ssavllllvlvl...iGfglgfv.fpsllalasdlappe 332
                 ++++++ +++    ++a +++d++grr+ ll++ ++++++ + +a ++vt          ss+ ++ +++v+   + f+++++  p+ ++++s+++p +
  CCD25512.1 345 IVFGIVNFAS---TFVALYVVDKYGRRTCLLWGAAGMVCCMVVFASVGVTrlwphgkgngSSKGAGNCMIVFscfFIFCFATTwAPIPFVIISESFPLR 440
                 6666666666...999**************************************999999777777776666663444777776788899999999999 PP

       MFS_1 333 eagtasglfntag 345
                   ++ ++l ++ +
  CCD25512.1 441 VKAKGMALGTVSN 453
                 9999999877665 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.00075
       MFS_1  89 lvlrvlqGlgagalf.pagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperk 180
                 +v+ ++  ++ ++ + p+  ++i++ fp + ++++++l ++++++   +   + ++++ ++++ + +++l+ + + +f    +++++++++  
  CCD25512.1 411 IVFSCFFIFCFATTWaPIPFVIISESFPLRVKAKGMALGTVSNQMWNFCIGFFTPFITGAINFYYGYVFLGCLVFSWFY---VFIFVPETKGL 500
                 5666666666655551667899*************************9999*******9999***************77...77777766554 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.7   1.7e-07   0.00077      81     161 ..      97     179 ..      92     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.7e-07
       TRI12  81 slfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgcta.tkfntllaamtllgvaagp.agasplfvgelmsn 161
                 +l+ +++ +g a+  + +grl d +grr  ++++  + +vg ++  ++ +k+   l    + g+ ag  a  sp+++ e+  +
  CCD25512.1  97 GLLVSIFNIGCAIGSVFLGRLGDTIGRRKGIVVAVSIYMVGIVIQIASvKKWFQYLIGRIISGLGAGCiAVLSPMLISEVSPK 179
                 6888999**********************999999999***999876516788888999999**99973668*****997543 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.3     0.055   2.5e+02      45      87 ..     193     238 ..     126     279 .. 0.68
   2 ?    8.6   2.3   0.00048       2.1      36      80 ..     344     385 ..     269     395 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.055
     DUF1772  45 lsalafa.yla....araasrgarllylaaaallllsivpyTllvmvP 87 
                 ++   f+ y +    ++++++ ++++ l+  ++++ +++ + +++ vP
  CCD25512.1 193 VTFGIFLgYCTnygtKKHSNSVQWRVPLG--LCFAWALFMLGAMFLVP 238
                 33333333444666688888888888855..44443456666666666 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00048
     DUF1772  36 kavfpplallsalafaylaaraasrgarllylaaaal.lllsivpy 80 
                 + vf+ + ++s+ +++y++ ++ +r+++ll+ +aa++ +++  v++
  CCD25512.1 344 SIVFGIVNFASTFVALYVV-DKYGRRTCLLW-GAAGMvCCM--VVF 385
                 4678888888888888776.8899999****.555553774..433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3943.66
//
Query:       CCD25513.1  [L=352]
Description: hypothetical protein NDAI_0F01950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-24   86.1   1.4    1.3e-24   86.1   1.4    2.6  3  BCNT      Bucentaur or craniofacial development
  ------ inclusion threshold ------
        2.4    6.6  15.7        4.3    5.8  15.7    1.5  1  RRN3      RNA polymerase I specific transcription initiation 


Domain annotation for each model (and alignments):
>> BCNT  Bucentaur or craniofacial development
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3      0.35   3.2e+03      34      46 ..     116     128 ..     112     132 .. 0.75
   2 ?   -2.7   0.1       0.7   6.3e+03      24      42 ..     214     232 ..     206     238 .. 0.54
   3 !   86.1   1.4   1.4e-28   1.3e-24       9      75 .]     273     339 ..     268     339 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.35
        BCNT  34 kegikeeLeahnk 46 
                 +++++eeL++++k
  CCD25513.1 116 ARQLEEELNRKRK 128
                 4678999998887 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.7
        BCNT  24 SklDWeaykdkegikeeLe 42 
                 S++  ++y ++ + ++e++
  CCD25513.1 214 SSAEGREYLNAVQFQDEMK 232
                 4444444444444455544 PP

  == domain 3  score: 86.1 bits;  conditional E-value: 1.4e-28
        BCNT   9 aei..takkkKlstleKSklDWeaykdkegikeeLeahnkgkegYlerqdFLqRvddrkeekereaRla 75 
                 ++i   a k+Kl+tleKSklDW++y+dkegi++eL+ +nk+  gYl +qdFL+Rv+ +k+ek++e R++
  CCD25513.1 273 EQIisGAIKPKLTTLEKSKLDWATYVDKEGINDELQLYNKD--GYLAKQDFLNRVESKKDEKYKEFRQK 339
                 444446789********************************..9***********************85 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  15.7   0.00048       4.3     208     271 ..      33      99 ..      21     156 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.00048
        RRN3 208 kiDVeiqvele.dlddeedeeleeelee....deddedddeddeesdlddlssdeeaeedeekdeeees 271
                 ++DV   ++le + ++eede+ + +  +    d dd+ddd+dd+e +l+d++++e++e++++  + +++
  CCD25513.1  33 SVDVHNSNDLEdEYNEEEDEDFDPDKVKvtlgDADDDDDDDDDAETNLSDDDEEEQKEGKTR--SGKND 99 
                 68999999999666777666665553337776555555555554444444444444444322..22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1323  (0.0737911); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 2764.41
//
Query:       CCD25514.1  [L=420]
Description: hypothetical protein NDAI_0F01960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-24   83.1   3.7      3e-10   39.8   0.4    3.5  3  KH_1      KH domain
    4.7e-07   29.5   1.8    0.00068   19.4   0.1    2.7  2  KH_2      KH domain
    2.5e-05   24.1   0.5      0.039   13.8   0.0    2.7  2  KH_4      KH domain
  ------ inclusion threshold ------
      0.012   15.7   0.4        4.2    7.5   0.0    2.5  2  KH_5      NusA-like KH domain


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   1.8     2e-11   8.9e-08       3      65 ..      27      88 ..      25      89 .. 0.87
   2 !    9.2   0.0   0.00024       1.1       4      64 ..     111     171 ..     108     173 .. 0.85
   3 !   39.8   0.4   6.7e-14     3e-10       6      64 ..     331     388 ..     326     390 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 2e-11
                EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT...T.-EEEEEESHHHHHHHHHHHH CS
        KH_1  3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpksedegsderevtisGspeavekAkelie 65
                r+l+  s++g+i+G +G+ I+ I++++ ++I++  ++++  +er++ i+G  e+++kA  li 
  CCD25514.1 27 RMLCLDSQIGLIVGYRGEIIHTIKRDSSTQITISTRKMH-VNERVISIKGITENIAKAFGLIA 88
                7888899*************************7756666.9*********6666****88885 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00024
                 EEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT....T.-EEEEEESHHHHHHHHHHH CS
        KH_1   4 ilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg.sderevtisGspeavekAkeli 64 
                 +lvP   + ri G g  +  eI e + a  +    e+ + s++  +t+sG +++++ A   i
  CCD25514.1 111 LLVPYFVMARISGEGRYTMDEIIELSAADLRQT-KEPLPdSTDMLFTVSGVADSIHIATFYI 171
                 678888899***************99****944.444446******************8877 PP

  == domain 3  score: 39.8 bits;  conditional E-value: 6.7e-14
                 EGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT...T.-EEEEEESHHHHHHHHHHH CS
        KH_1   6 vPsslvgriIGkgGsnIkeIreetgakIkvpk.sedegsderevtisGspeavekAkeli 64 
                 ++ ++vg+iIGkgG+nIk +r+ t + I v + +e +  + r v ++G p ave+A+ li
  CCD25514.1 331 IKEEYVGCIIGKGGQNIKTLRNATLCDIEVSDpIEGR--EIRRVIVKGCPLAVEAALLLI 388
                 7889*************************99666665..9********6666****9888 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.2   0.00035       1.6      33      69 ..      32      67 ..      14      76 .. 0.85
   2 !   19.4   0.1   1.5e-07   0.00068      29      54 ..     329     354 ..     309     372 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00035
                ESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEE CS
        KH_2 33 esqpgivIGkgGsnikkigkelrkdieklegkkVkln 69
                +sq g+++G +G+ i +i+ +   +i ++  +k ++n
  CCD25514.1 32 DSQIGLIVGYRGEIIHTIKRDSSTQI-TISTRKMHVN 67
                79**********************99.5777776654 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 1.5e-07
                 EEEEESCHHHHHTGGGHHHHHHHHHH CS
        KH_2  29 iviresqpgivIGkgGsnikkigkel 54 
                   i+e+  g +IGkgG+nik+++ + 
  CCD25514.1 329 AYIKEEYVGCIIGKGGQNIKTLRNAT 354
                 5699******************9876 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1   0.00081       3.6      26      54 ..      21      49 ..       9      51 .. 0.81
   2 !   13.8   0.0   8.6e-06     0.039      33      55 ..     329     351 ..     306     356 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00081
        KH_4 26 eeeveielnvegedlGrvIGkrGrtldAl 54
                 eeve++  +  +++G+++G+rG+++  +
  CCD25514.1 21 LEEVEMRMLCLDSQIGLIVGYRGEIIHTI 49
                46777778888899***********9877 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 8.6e-06
        KH_4  33 lnvegedlGrvIGkrGrtldAlq 55 
                  ++++e +G +IGk G++++ l+
  CCD25514.1 329 AYIKEEYVGCIIGKGGQNIKTLR 351
                 5689999*************998 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1    0.0033        15      18      36 ..      34      52 ..      28      74 .. 0.88
   2 ?    7.5   0.0   0.00093       4.2      18      35 ..     335     352 ..     318     354 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0033
        KH_5 18 pvGaivgkkGsrikavsse 36
                ++G ivg +G++i++++++
  CCD25514.1 34 QIGLIVGYRGEIIHTIKRD 52
                69**************975 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00093
        KH_5  18 pvGaivgkkGsrikavss 35 
                  vG i+gk+G++ik++ +
  CCD25514.1 335 YVGCIIGKGGQNIKTLRN 352
                 59************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.35
# Mc/sec: 3604.19
//
Query:       CCD25515.1  [L=644]
Description: hypothetical protein NDAI_0F01970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
     0.0019   18.0   0.5     0.0046   16.8   0.5    1.7  1  F-box       F-box domain
     0.0064   16.4   0.1      0.015   15.1   0.1    1.6  1  F-box-like  F-box-like
  ------ inclusion threshold ------
      0.025   14.7   0.6        1.9    8.7   0.0    2.7  2  Ku_PK_bind  Ku C terminal domain like


Domain annotation for each model (and alignments):
>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.5   7.7e-07    0.0046       4      43 ..       5      44 ..       4      49 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.7e-07
                HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHH CS
       F-box  4 srLPsevlrhILerLplsdllalrrVSkgwrilidsdrlw 43
                ++LP+e++ +I +  +l+dl+ lrrV k ++  + s  +w
  CCD25515.1  5 DSLPLEIWSQIVSDISLKDLFKLRRVNKILNEKLSSNTIW 44
                58**************************999888777666 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   2.6e-06     0.015       2      43 ..       5      45 ..       4      48 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.6e-06
  F-box-like  2 srLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWr 43
                ++LP Ei +qI s ++++dL  l++V +  ++  +++  +W+
  CCD25515.1  5 DSLPLEIWSQIVSDISLKDLFKLRRVNKILNEKLSSN-TIWK 45
                69************************99888887777.7776 PP

>> Ku_PK_bind  Ku C terminal domain like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.016        93      53      75 ..     234     259 ..     214     283 .. 0.67
   2 ?    8.7   0.0   0.00031       1.9      47      73 ..     456     482 ..     446     490 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.016
  Ku_PK_bind  53 lReeai...eeeepelyNdFlrdlkk 75 
                 +R +     +++  +++N +l+d+kk
  CCD25515.1 234 FRPKFYndiNNQIKQKFNGYLKDFKK 259
                 55444322256666777777777776 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00031
  Ku_PK_bind  47 veclkalReeaieeeepelyNdFlrdl 73 
                  ecl+a R ++++ ++ e++N+F+++ 
  CCD25515.1 456 GECLVAKRMTSMSRSTQEKWNQFIEQT 482
                 69**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4650.09
//
Query:       CCD25516.1  [L=440]
Description: hypothetical protein NDAI_0F01980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       832  (0.0464053); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 3573.19
//
Query:       CCD25517.1  [L=1118]
Description: hypothetical protein NDAI_0F01990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-44  152.1  39.3    2.6e-44  151.6  39.3    1.2  1  AA_permease  Amino acid permease
    2.5e-13   49.9   2.4      1e-07   31.4   0.1    3.3  3  SLC12        Solute carrier family 12


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.6  39.3   2.9e-48   2.6e-44       2     478 ..      67     542 ..      66     543 .. 0.90

  Alignments for each domain:
  == domain 1  score: 151.6 bits;  conditional E-value: 2.9e-48
  AA_permease   2 vlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswitv.laleltaa 97 
                  v++ + ++v ++ +f++ g++l+q G+l +l  +ll++++ +l++ls+++i+tng  ++gg+y+++sr+lgpe+G++iG  +++ ++++  +++l+ +
   CCD25517.1  67 VFIPTSLNVLSILMFLRFGFILGQLGLLCTLGLLLLSYFINLLTTLSISAISTNGTvRGGGAYYMISRCLGPEFGGSIGVVFFLGQVLNsGMNALGLV 164
                  66777899*************************************************************************99988876268899999 PP

  AA_permease  98 siliqfwel..vtdlpkawvt..............gavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdng 179
                  ++l+ +++    +++++a                 ++v+l+  lii lvg     +a  il+++++ +i++  +     l+++  ++g ++ + g ++
   CCD25517.1 165 EPLLYNLGKpsADSISSAA-LfallprgywyeltyASVILCTCLIIALVGSQTVSRAGNILFFVLVSSIVSIPLSV---LFQKPFENG-KIIYSGISW 257
                  9999999876334444444.36**************************************9999999999865554...777777888.88899999* PP

  AA_permease 180 sifknnlppgfakeeegafkn....fisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaa 273
                  ++f+nnl+p f+k + g+++     f  +f ++++a +Gi ++a +++E++ P+ksiPk++l  ++ ++  Y+ ++++++ ++pr+            
   CCD25517.1 258 ETFQNNLFPHFTKGAAGSILKkketFNNLFGVFFPATAGIFAGAGMSSELRKPSKSIPKGTLWGLLFTFSCYTVVVISMSCTIPRKT----------- 344
                  ************555555542244499999********************************************************9........... PP

  AA_permease 274 spfvifikesgvsvlaplinaviltaalssansslysasRvlyslakdglaP..kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfll 369
                   +++ +++   vs+++ +i ++  ++ l+s++ ++  a  vl + +kd ++P  +v++     ++P+  +++++++ +++l+ + +n +a+ ++  +l
   CCD25517.1 345 -LYNDVQVIQSVSAVQWIIFLGEMATSLFSIIVGMLGAAYVLEAISKDCIFPglSVFN-----RNPIYTLIFTWLLTQICLFSD-VNKIATFITLTFL 435
                  .7889999999*****************************************777774.....68***************9655.5555555566666 PP

  AA_permease 370 aisaliglivwlliilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvk 467
                      +++++++ll i + ++fR++++y +r ++ +g+++  l ++ + +++a  ++l ++ l++++ +  +pk wg +s+ + y++v  +l++l  ++
   CCD25517.1 436 MTFIVMNMACFLLEISAAPNFRPSFNYFNRYTAFVGAISSILAMIIVDGVTASALMLGMVILFLLIHYVSPPKPWGDVSQSLIYHQVRKYLLRL--RQ 531
                  666789*************************************************************************************998..56 PP

  AA_permease 468 lhvknkrpqll 478
                  +++k +rpq+l
   CCD25517.1 532 DNIKYWRPQIL 542
                  77788888765 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   1.1e-11     1e-07       4      86 ..     554     638 ..     552     649 .. 0.93
   2 !    4.4   0.0    0.0018        16     254     311 ..     776     834 ..     774     840 .. 0.87
   3 !   12.2   0.1   7.5e-06     0.067     365     424 ..    1051    1114 ..    1045    1117 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.1e-11
       SLC12   4 LvdlahlitknvsLlicghvvkeklsqklreeltkkaqkwLkkr...kikaFyalvdaesleegakaLlqasGlgklkpnilllGy 86 
                 L+ +++++ k+ +L i ghv+ +++ q++ +e++ +++ w+k r    ikaF ++  + +l  g+++ +  +Glg +kpni +lG+
  CCD25517.1 554 LIRFCNHL-KKGGLYILGHVTVTDKFQDQINEMKIQQRAWVKIRdmlGIKAFVQIGMGPTLPWGVRNVFIGAGLGGMKPNITVLGF 638
                 88899888.678******************************9977779************************************9 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0018
       SLC12 254 DGgLtlllpyilstrkkwkec.klRvFalankkeeleeeqremaslLskfridysdltv 311
                    L+l l  il t  +wk++  lRv    +k+ +   e  +m++lL  +ri+ + l+v
  CCD25517.1 776 TYTLILQLGAILVTVPEWKDThTLRVILFVEKELDRGPEIDRMTKLLGVLRIEAEVLVV 834
                 557999999*********87626*******99999999***************988776 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 7.5e-06
       SLC12  365 rqlrlrElLkehSskanLivmsLPvprkgavsaa....lYmaWLevLtkdlpPvlLvRGnqtsv 424 
                  ++l l++++ + S  ++Li  +LP+p  g+ +++     Y+  L++  ++lpP++L+     +v
  CCD25517.1 1051 QHLILNDMMTQLSGGSDLIFSTLPIPALGTHTDPeaslQYIEDLDLWLEGLPPTMLINSQTMTV 1114
                  6899**********************9999865422226999999999********97665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1118 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       689  (0.0384294); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 7834.73
//
Query:       CCD25518.1  [L=418]
Description: hypothetical protein NDAI_0F02000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.2e-103  344.0   0.1   1.1e-102  343.6   0.1    1.2  1  Pox_MCEL         mRNA capping enzyme
    1.3e-10   41.8   0.0    2.7e-10   40.8   0.0    1.5  1  Methyltransf_25  Methyltransferase domain
    1.2e-09   38.8   0.1    1.7e-08   35.1   0.0    2.3  2  Methyltransf_12  Methyltransferase domain
    7.2e-08   33.0   0.0    1.8e-07   31.7   0.0    1.7  1  Methyltransf_11  Methyltransferase domain
    7.1e-06   26.0   0.1    2.3e-05   24.3   0.0    1.9  2  Methyltransf_23  Methyltransferase domain
    9.4e-06   25.5   0.0    2.4e-05   24.2   0.0    1.8  1  Methyltransf_31  Methyltransferase domain
     0.0063   15.7   0.0      0.013   14.7   0.0    1.5  1  NNMT_PNMT_TEMT   NNMT/PNMT/TEMT family
  ------ inclusion threshold ------
      0.025   14.2   2.0       0.51    9.9   0.0    2.2  2  Methyltransf_15  RNA cap guanine-N2 methyltransferase
       0.05   13.1   0.0       0.13   11.7   0.0    1.7  1  Methyltransf_4   Putative methyltransferase
       0.12   12.9   0.3       0.39   11.2   0.3    2.0  1  Glyco_hydro_108  Glycosyl hydrolase 108
       0.82    9.6   6.3        3.3    7.7   0.1    2.3  2  Methyltransf_32  Methyltransferase domain
        9.4    4.4   7.7         16    3.7   7.7    1.3  1  CDC45            CDC45-like protein


Domain annotation for each model (and alignments):
>> Pox_MCEL  mRNA capping enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.6   0.1  7.5e-106  1.1e-102       2     333 .]      96     410 ..      95     410 .. 0.97

  Alignments for each domain:
  == domain 1  score: 343.6 bits;  conditional E-value: 7.5e-106
    Pox_MCEL   2 geaetesevtdlvathynerpetgellkkRiastiiylrnlnNyiKslLiseyasktkldesnklkvLdldcgkGgDLeKyekgeIsklvatDiaeesi 100
                 ++a+++ +v+++v++hyner+  ++   kR  s+ii+lrn+nN+iK++Li++y+++ +        v +l+cgkGgDL+Ky  ++Is+++++Di+++si
  CCD25518.1  96 MTANRTINVDQIVREHYNERTVIAN-KSKRYLSPIIKLRNFNNAIKYMLIDKYTKRGDV-------VVELGCGKGGDLRKYGNAGISQFIGIDISNASI 186
                 6789999*****************5.99*******************************.......********************************* PP

    Pox_MCEL 101 eeckeRYnklrsekkskyykFdaelirsdsfvssvrevfed...yelkfdivslQFaiHYsFeseekartvlrNvaellasGGkvlgTtpdgdelsklt 196
                 +e+++RY   r +++     F++ li++d+f +s+  ++e+   +++++d+vs+QF++HY+Fe+eekar+ l N++++l+ GG+++gT+pd++++++++
  CCD25518.1 187 QEAHRRY---RAMRNLA---FQVILITGDCFGESLGPAVEPfpeCRFPCDVVSTQFCLHYAFETEEKARRTLINISKSLKVGGYFFGTIPDSEFIRYKL 279
                 *******...8888886...***************9887766669****************************************************** PP

    Pox_MCEL 197 vkklkviekdlpsfgNsiyvvkfeeekiev......plfGakYeynledvvkdvpEyivkfealvklaeeYgleLvdkkdfaeiieesikkelkklikr 289
                 +k +k +e  +ps+gNsiy+v+fe++++++      +++G++Y+y+led++++vpEy+v+fe+l++la+eYg+eL  +++f++++ ++i++++ k+  +
  CCD25518.1 280 NKISKDVE--KPSWGNSIYKVTFENNEYQKndnefpSPYGQMYTYWLEDAIDNVPEYVVPFETLRSLADEYGMELELQMPFNKFFVQEIPNWIDKFSPK 376
                 *****996..9*****************999****99************************************************************** PP

    Pox_MCEL 290 vskleerkstknfeelnrsalkstlgkdeeeals.yYlvfvfeKr 333
                 ++           e+l+rs+++ ++++de+ea+s +Y++f+f+K+
  CCD25518.1 377 MR-----------EGLQRSDGRFGVEGDEKEAASyFYTMFAFRKV 410
                 **...........9*******************978*******95 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   1.8e-13   2.7e-10       1      97 []     154     263 ..     154     263 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.8 bits;  conditional E-value: 1.8e-13
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHH.TTT..TEEEEESBC..CGB.....SSSTT..TEEEEEEESTGGG.SS.HH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraee.egl..nvefvqgda..edl.....pfedg..sfDlvvssgalhh.ls.de 80 
                      v++lGcG+G ++++  ++ g ++++g+Dis + +++a++r+++ ++l  +v +++gd+  e+l     pf++    +D+v  +++lh+ ++ +e
       CCD25518.1 154 VVELGCGKGGDLRKYGNA-GISQFIGIDISNASIQEAHRRYRAmRNLafQVILITGDCfgESLgpavePFPECrfPCDVVSTQFCLHYaFEtEE 246
                      89**************99.69********************996445779999*****987764444447666347799999999**9875156 PP

                      HHHHHHHHHHHHEEEEE CS
  Methyltransf_25  81 dlekalkeiarvLkpgG 97 
                      +++++l +i++ Lk gG
       CCD25518.1 247 KARRTLINISKSLKVGG 263
                      6799**********999 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2      0.53     8e+02      29      63 ..      58      91 ..      40     122 .. 0.68
   2 !   35.1   0.0   1.1e-11   1.7e-08       1      99 []     155     265 ..     155     265 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.53
  Methyltransf_12 29 spsaiedakeklakrennnnnnvelealdlldldg 63
                     s++ i +++++ ++ ++++n+++++++l  ++l++
       CCD25518.1 58 STHGI-QKRKHQRFDQEERNKKLRVQKLREEQLKQ 91
                     44455.55555555555666677777666555543 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 1.1e-11
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg.........ssfDlvvasnvlhhl....kd 81 
                      +e+GcG G  lr   ++   ++++g+Dis ++i+ a ++ ++ +n+ ++++ ++ +  +++ g+            D+v   ++lh+     ++
       CCD25518.1 155 VELGCGKGGDLRKYGNA-GISQFIGIDISNASIQEAHRRYRAMRNLAFQVILITGDCFGESLGPavepfpecrFPCDVVSTQFCLHYAfeteEK 247
                      69***************.888999*********9999999999998888887777776666666********99*****************999 PP

  Methyltransf_12  82 irevldnirklLkpgGrl 99 
                       r++l ni k Lk gG++
       CCD25518.1 248 ARRTLINISKSLKVGGYF 265
                      99**************85 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.2e-10   1.8e-07       2      95 ..     156     266 ..     155     267 .. 0.85

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 1.2e-10
                      EET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-...EEEETTEECC......CT.SS-TT-E..EEEEEES-CCC-....CCHH CS
  Methyltransf_11   2 dvGcGtGrlaealakrg.arvvgvDlskemlklakekaseegl...kvefvvadae......kl.pfednsf..Dlvvssevlhhv....edpe 78 
                      ++GcG+G  ++++ ++g ++ +g+D+s++ ++ a+++++  ++   +v ++ +d+        + pf++  f  D+v  +++lh+     e+ +
       CCD25518.1 156 ELGCGKGGDLRKYGNAGiSQFIGIDISNASIQEAHRRYRAMRNlafQVILITGDCFgeslgpAVePFPECRFpcDVVSTQFCLHYAfeteEKAR 249
                      89*************************************99998886666666665433333355899975444***********9999889** PP

                      HHHHHHHHHEEEEEEEE CS
  Methyltransf_11  79 kalkeiaRvLkpgGllv 95 
                      ++l +i + Lk gG+++
       CCD25518.1 250 RTLINISKSLKVGGYFF 266
                      ***************97 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       1.9   2.8e+03      51      76 ..      53      75 ..      51     105 .. 0.66
   2 !   24.3   0.0   1.5e-08   2.3e-05      18     125 ..     146     307 ..     123     354 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.9
  Methyltransf_23 51 Dlspeaveiaekakkaqkdqfdeqea 76
                     D+s++  + ++k+k +++dq+   e+
       CCD25518.1 53 DPSEKSTHGIQKRKHQRFDQE---ER 75
                     677777776544444444444...33 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 1.5e-08
  Methyltransf_23  18 pklraggrvLdiGcGtGillevlrengf.svtgvDlspeaveiae...........kakkaqkdqfdeqeaaepqg...............kfd 84 
                      ++ ++g  v+++GcG+G  l+ +   g  +++g+D+s + +++a            + +    d+f         g                +d
       CCD25518.1 146 KYTKRGDVVVELGCGKGGDLRKYGNAGIsQFIGIDISNASIQEAHrryramrnlafQVILITGDCF---------GeslgpavepfpecrfPCD 230
                      5578999*******************9999*******99999887755555555553333333333.........1444566667777788999 PP

  Methyltransf_23  85 lIvlrevlehvp....dppellrqiatllkpgGylllseplasl................................k 125
                      +++  ++l+          ++l +i + lk gGy++ + p+++                                 k
       CCD25518.1 231 VVSTQFCLHYAFeteeKARRTLINISKSLKVGGYFFGTIPDSEFiryklnkiskdvekpswgnsiykvtfenneyqK 307
                      99999999876622224669999*****************9988998888888888877666655444443333331 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.6e-08   2.4e-05       3     110 ..     150     268 ..     148     325 .. 0.64

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 1.6e-08
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeq....gdieeleklled.........ekfDlilsnev 83 
                      +g +v++lGCG+G ++ +   ++g  ++++GiDis  +i+ A  + +     n+ F++    gd +  +  l +          + D++ ++  
       CCD25518.1 150 RGDVVVELGCGKGGDLRKYG-NAG-ISQFIGIDISNASIQEAHRRYR--AMRNLAFQVilitGDCFGES--LGPavepfpecrFPCDVVSTQFC 237
                      67889**********99999.555.489**************99754..66777777655554433322..22222223333344566555433 PP

  Methyltransf_31  84 l.naladpdkile....eiervlkpggillie 110
                      l +a+   +k+ +    +i++ lk gg++  +
       CCD25518.1 238 LhYAFETEEKA-RrtliNISKSLKVGGYFFGT 268
                      32222222222.22333666666666666655 PP

>> NNMT_PNMT_TEMT  NNMT/PNMT/TEMT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   8.7e-06     0.013     159     196 ..     229     266 ..     213     276 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.7e-06
                     EEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEE CS
  NNMT_PNMT_TEMT 159 advvvtifcleaacedleeylralrnlasllkpGGhlv 196
                      dvv+t fcl +a e+ e+ +r+l n+ + lk GG++ 
      CCD25518.1 229 CDVVSTQFCLHYAFETEEKARRTLINISKSLKVGGYFF 266
                     69*********************************985 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.6     0.028        42      83     143 ..      61     124 ..      58     146 .. 0.65
   2 ?    9.9   0.0   0.00034      0.51       3      61 ..     153     232 ..     151     312 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.028
  Methyltransf_15  83 GpsYkkqekfdlkkklkplkleqllkeslklskniilfLPrnsdlnql....aaltaevlekaak 143
                      G++ +k++ fd +++ k+l +++l +e+lk ++ i +   r  +++q+    ++  + +++k+++
       CCD25518.1  61 GIQKRKHQRFDQEERNKKLRVQKLREEQLK-QHDIEMTANRTINVDQIvrehYNERTVIANKSKR 124
                      7788999****************9888765.6778899999999999944432222223333333 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00034
  Methyltransf_15   3 vilDlfsGaGGnviqfalv.fekviaieinleklacaqhNaevY.gvsdkitlvlgdvfe...................l 61 
                      v++ l +G GG+  ++ +   ++ i+i+i++  ++ a++  ++  + + ++ l++gd+f                    +
       CCD25518.1 153 VVVELGCGKGGDLRKYGNAgISQFIGIDISNASIQEAHRRYRAMrNLAFQVILITGDCFGeslgpavepfpecrfpcdvV 232
                      688999***********9977899**************99886526799*********9766666555555555555550 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.8e-05      0.13       4      48 ..     153     196 ..     150     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.8e-05
                     EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHC CS
  Methyltransf_4   4 vvleiGcGkGeflvalAkknPdknflGiEirvkvvakvlkkieal 48 
                     vv+e+GcGkG+ l +  ++    +f+Gi+i++ +++++ ++ +a 
      CCD25518.1 153 VVVELGCGKGGDLRKYGNAGI-SQFIGIDISNASIQEAHRRYRAM 196
                     89*************998765.689************99988765 PP

>> Glyco_hydro_108  Glycosyl hydrolase 108
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   0.00026      0.39      14      60 ..      50     112 ..      45     151 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00026
                      -TCGGCG-EECTEEHHHCCCTT-BS....................-CCCS-HHHHHHCHHHHT CS
  Glyco_hydro_108  14 dpkDkGGeTnkGItkktlralrkekaida................dvkaltreeaaaiykedY 60 
                        +D+  ++ +GI k+ ++++++e+++++                ++ a    ++ +i +e+Y
       CCD25518.1  50 STDDPSEKSTHGIQKRKHQRFDQEERNKKlrvqklreeqlkqhdiEMTANRTINVDQIVREHY 112
                      56899****************999988889666666666666655444444444555555555 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   2.9     0.062        93      50     103 ..      55     105 ..      37     128 .. 0.71
   2 ?    7.7   0.1    0.0022       3.3      21      75 ..     146     197 ..     129     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.062
  Methyltransf_32  50 yklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeatssktltkkve 103
                       + + +gi  +++   + e+r++kl+  + ++l++++l+ ++++ ++ +t +v+
       CCD25518.1  55 SEKSTHGIQKRKHQRFDQEERNKKLR--V-QKLREEQLKQHDIEMTANRTINVD 105
                      677899********************..8.999999999888877665555555 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0022
  Methyltransf_32  21 akesgaltvvDvGaGkgY.Lsfvlalkekeyklkvvgidakeelvekaekraeklg 75 
                      + +++   vv++G+Gkg  L    +        +++gid++++ +++a +r ++++
       CCD25518.1 146 KYTKRGDVVVELGCGKGGdLRKYGN----AGISQFIGIDISNASIQEAHRRYRAMR 197
                      34566789********831333333....35889**************99987765 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   7.7      0.01        16     140     228 ..      34     120 ..       4     130 .. 0.37

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.01
       CDC45 140 eeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrsepsakklrrq....lkkerrkyeavlekyysqgtsyge 228
                 +  d + +++ +e++++++d +e++++  +krk+++   ++++++++ + ++ r+e    +l+++    + ++  +  ++++++y++ t++++
  CCD25518.1  34 KPTDGNGSARLDETNSSTDDPSEKSTHGIQKRKHQR--FDQEERNKKLRVQKLREE----QLKQHdiemTANRTINVDQIVREHYNERTVIAN 120
                 111111111111112222222222222222332111..111222222222222333....222222333556666667788888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1421  (0.0792571); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3103.00
//
Query:       CCD25519.1  [L=888]
Description: hypothetical protein NDAI_0F02010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-48  163.9   0.5    8.2e-48  162.5   0.1    1.9  2  DEAD        DEAD/DEAH box helicase
    1.5e-20   73.5   0.2    1.5e-20   73.5   0.2    2.8  3  Helicase_C  Helicase conserved C-terminal domain
    1.7e-07   31.4   0.0    1.7e-07   31.4   0.0    3.3  3  ResIII      Type III restriction enzyme, res subunit
     0.0074   15.9   0.2      0.014   15.1   0.2    1.5  1  Fis1_TPR_N  Fis1 N-terminal tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   0.1   1.8e-51   8.2e-48       1     173 [.     311     484 ..     311     487 .. 0.93
   2 ?   -1.9   0.0      0.54   2.4e+03      49     126 ..     558     629 ..     539     631 .. 0.57

  Alignments for each domain:
  == domain 1  score: 162.5 bits;  conditional E-value: 1.8e-51
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS....TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet....kgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskl 94 
                 t+iQ++aip+i++g+dv++  +TGsGKT  +l+p+++++  +    k++tgp  li++PtreLa q+++++ kf+++ + ++  +++gg++ ++q++ l
  CCD25519.1 311 TPIQSQAIPAIMDGHDVIGISKTGSGKTISYLLPLIRHIKAQnplmKNETGPLGLILAPTRELALQIHQEIIKFISTdTAITSICCTGGSELKQQINSL 409
                 89*************************************888**********************************8677888899************* PP

                 HTTCSEEEEEHHHHHHHH..HCTS.SHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  95 dngvdivvgtpgrlddll..stgk.lnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 ++gv+ivv+tpgrl+dll  ++g+ +++++v+f+++DEadrl d gf+++i +i+++++      + ++q++++SAT+p+++
  CCD25519.1 410 KKGVHIVVATPGRLIDLLtlNNGRlMSIKRVTFVIMDEADRLFDLGFEPQITQIMKTIR------P-DKQCVLFSATFPNKL 484
                 ****************99895566377*******************************3......4.456********9766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.54
                 EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT....CSEEEEEHHHHHHHHHCTSSHCTTEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  49 kalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng....vdivvgtpgrlddllstgklnlsqvrflV 126
                 k++i + +++++  + ++l++ +     +  +i  g+++++ +++l+n       i+v+t      +ls + ln+ +v++++
  CCD25519.1 558 KTIIFVASQQICDFIGTKLENEGY----QPFSIHAGKSYQERVQNLENFkstkNSILVATE-----VLS-RGLNITEVSLVI 629
                 555666665555555555555555....444566677777777777421222466777665.....222.334566666655 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       1.3     6e+03      23      54 ..      14      49 ..       9      58 .. 0.67
   2 ?   -1.4   0.0      0.67     3e+03      15      61 ..     360     411 ..     346     448 .. 0.69
   3 !   73.5   0.2   3.5e-24   1.5e-20      14     111 .]     554     651 ..     542     651 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
                ESSHHHHHHHHHHHHHT....TSTEEEESTTSTHHH CS
  Helicase_C 23 vntidrlekvklllekk....gikvavlhgelpqne 54
                +nt+d ++k +ll+e++    + k  ++  +l++++
  CCD25519.1 14 SNTKDAVDKQRLLQERRaklaKWKQKKIEQDLQKKS 49
                688899998888877765555555555555555554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.67
                 TTSEEEEEESSHH...HHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHHHH CS
  Helicase_C  15 eggkilifvntid...rlek....vklllekkgikvavlhgelpqnereeileq 61 
                  g   li ++t++   +       +k++ +  +i++++++g  + ++++ +l++
  CCD25519.1 360 TGPLGLILAPTRElalQ--IhqeiIKFISTDTAITSICCTGGSELKQQINSLKK 411
                 55556777788886443..23244666655558888888887777776666655 PP

  == domain 3  score: 73.5 bits;  conditional E-value: 3.5e-24
                 TTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  14 eeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                  +++k++ifv +++ ++ +   le++g++   +h+  + +er + le+f++ +  +L+at v++rG++i++v+lVi+f++ ++ ++y++  GRt+R++
  CCD25519.1 554 PQDRKTIIFVASQQICDFIGTKLENEGYQPFSIHAGKSYQERVQNLENFKSTKNSILVATEVLSRGLNITEVSLVIIFNAVKTFAQYVHTTGRTARGN 651
                 5789************7644446899***********************999999*****************************************85 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   1.7      0.64   2.9e+03      78     122 ..      37      99 ..      19     122 .. 0.49
   2 !   31.4   0.0   3.8e-11   1.7e-07       7     170 ..     313     481 ..     308     482 .. 0.79
   3 ?   -0.0   0.3      0.17   7.8e+02      55     110 ..     557     613 ..     501     617 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.64
                 TGG.........GEEEESSS-B--.............-SEEEEEHHHHHHTH........... CS
      ResIII  78 lseayke.....igkkvsgdkkka......kekdstnkkilvttiqsldadseee.......e 122
                 ++++ ++      ++++++d +++      + +d+++  + +t  +++ +d ++        +
  CCD25519.1  37 KQKKIEQdlqkkSNNVTNNDANIRirsepvNVRDKNDEALPITAAKRIIEDVDTIppkkeskK 99 
                 333333233222222233333333666666666777777777777776666644466544331 PP

  == domain 2  score: 31.4 bits;  conditional E-value: 3.8e-11
                 HHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S...........-EEEEESSHHHHHHHHHHGGGGTGG.......GEEEESSS-B- CS
      ResIII   7 yQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee......kflflvprkslleqtleefkkflseayke...igkkvsgdkkk 95 
                  Q +ai +++      + + ++    TG+GKT+ + + li++++ +++          l+l+p+++l  q  +e+ kf+s++++     ++  s+ k++
  CCD25519.1 313 IQSQAIPAIM------DGHDVIGISKTGSGKTISYlLPLIRHIKAQNPLMknetgpLGLILAPTRELALQIHQEIIKFISTDTAItsiCCTGGSELKQQ 405
                 5555555554......3344666779*********89999999988766678888889***********************998766433334445555 PP

                 -.......-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS-S CS
      ResIII  96 akekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTATpe 170
                 + ++ ++  +i+v+t  +l   +  + ++   ++ +r  ++i+DEa rl +     ++++i++ +++ +  + ++AT++
  CCD25519.1 406 I-NSLKKGVHIVVATPGRLIDLL--TLNNGRLMSIKRVTFVIMDEADRLFDLgfePQITQIMKTIRPdKQCVLFSATFP 481
                 5.88899************9999..45677788888899***********975545999999999665778999***86 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.17
                 .-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--.......-SEEEEE CS
      ResIII  55 ekflflvprkslleqtleefkkflseayke.igkkvsgdkkkakekdstnkkilvtt 110
                 +k++++v ++++++   +++++   ++++  +gk+++++ ++ ++ +st+++ilv+t
  CCD25519.1 557 RKTIIFVASQQICDFIGTKLENEGYQPFSIhAGKSYQERVQNLENFKSTKNSILVAT 613
                 255555555555555555555544444444444444444444445556666666655 PP

>> Fis1_TPR_N  Fis1 N-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   3.1e-06     0.014      10      33 .]     851     874 ..     849     874 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.1e-06
  Fis1_TPR_N  10 LvkSknredqqeGiaLLeelyrds 33 
                 L+  +n +d+++Gi+LLee ++d+
  CCD25519.1 851 LIEGRNEKDVRLGIELLEEKVKDG 874
                 677899*************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1208  (0.0673769); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 6354.41
//
Query:       CCD25520.1  [L=893]
Description: hypothetical protein NDAI_0F02020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        4.7    7.3   6.6        0.3   11.3   0.2    2.2  2  Patatin   Patatin-like phospholipase


Domain annotation for each model (and alignments):
>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.2      0.23   4.2e+03     143     158 ..     159     174 ..     107     239 .. 0.58
   2 ?   11.3   0.2   1.6e-05       0.3     105     175 ..     675     791 ..     581     791 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.23
     Patatin 143 atastanranglyted 158
                 + ++ +n++n+ ++++
  CCD25520.1 159 NNNNNNNNNNNINHHS 174
                 3333333333333332 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 1.6e-05
     Patatin 105 v.........ladktlkrlsarlgklpllks.....................................lftanqavpaittataatastanranglyte 157
                 +         ++++  ++   +l++++l++                                      + t ++++ ++ t++++ ++ +n++n++++ 
  CCD25520.1 675 LrdatvtwtqFKRDHANDNGNNLPTISLSSTttstgyntpipttgqntplrtpasepntnnsgyllnvAITNSINNNNNNTNNPNGNNKNNTNNSANSN 773
                 0333333333555555555555555544444666666666666666678888888888888899999899***************************** PP

     Patatin 158 dddddvdladavraSsaf 175
                 ++ +  + ++a+ aS af
  CCD25520.1 774 TEYYSHPALQAANASGAF 791
                 ***************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1783  (0.0994478); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.02u 0.33s 00:00:01.35 Elapsed: 00:00:00.50
# Mc/sec: 5361.31
//
Query:       CCD25521.1  [L=616]
Description: hypothetical protein NDAI_0F02030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-14   51.5   0.4    6.4e-13   48.7   0.0    2.2  2  PAS       PAS fold
    9.4e-07   28.9  10.8    1.7e-06   28.0  10.8    1.4  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain
  ------ inclusion threshold ------
        1.5    8.3   5.1        1.5    8.3   3.4    1.8  2  DUF1189   Protein of unknown function (DUF1189)


Domain annotation for each model (and alignments):
>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.5      0.14   8.1e+02      43      81 ..     104     142 ..     101     156 .. 0.72
   2 !   48.7   0.0   1.1e-16   6.4e-13       2     111 ..     498     612 ..     497     614 .. 0.95

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.14
                 TSBGGGGBSTTHHHHHHHHHHHHHHHTT-ECCCCEEEEC CS
         PAS  43 gkslldliheeddaelaelleqlleqgeesrageisfkl 81 
                 +k l + i  ++++ ++++l+ + +q++++ ++++s   
  CCD25521.1 104 NKDLPIPIRATESSSMNQELRLQQQQQQQQLSMQRSQQS 142
                 566666666677777888888888888888887777655 PP

  == domain 2  score: 48.7 bits;  conditional E-value: 1.1e-16
                 HHHHHHHHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGGGBSTTHHH...HHHHHHHHHHHHTT-ECCCCEEEEC..TTSSEEEEEEEEEE CS
         PAS   2 dlraileslpdpifvvDedgrilyvNaaaeellGlsreevlgkslldliheedda...elaelleqlleqgeesrageisfkl..rdgrpihlevrasp 95 
                 +++ ++e++ +p++++++ g i+yvN+++e l+G++ +e+l+k+ + + + +d +   +++     ++++ + s++++++  l    g +i++++ ++ 
  CCD25521.1 498 EYSKFIEQIGTPTCIWRRTGQISYVNEEFEILTGWTKDELLNKMTFLVEILDDGSvrdYFKTFSNVAYKDFKGSEIMNHCGILtpIEGVVIECCCIWTL 596
                 7899******************************************8888777779999********************999999************** PP

                 EEETTEEEEEEEEEEE CS
         PAS  96 vrdaggeilgflgvlr 111
                  rd++g +l++lg ++
  CCD25521.1 597 KRDISGLPLMILGNFM 612
                 ************9987 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0  10.8   2.8e-10   1.7e-06       2      39 ..      59      97 ..      58      98 .. 0.92

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 2.8e-10
                S-HHHHHCT---STSSSS-HHHHHCT..HHHCCCCTCCCE CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkkln..leCtfysesskr 39
                aC+nC+k +v C+a++P Cs+C+k++   +C + ++++ +
  CCD25521.1 59 ACINCSKWHVSCEAQRP-CSRCIKKGlkDTCIDAPRKKSK 97
                9****************.********98899999988876 PP

>> DUF1189  Protein of unknown function (DUF1189)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.4   0.00026       1.5      46     140 ..     269     367 ..     261     374 .. 0.82
   2 ?   -3.6   0.0       1.1   6.7e+03     137     162 ..     453     478 ..     441     481 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00026
     DUF1189  46 yefnskinqleelieeeipdFtiedGelqieekepiiiqedgitiifDtsgetdeedlekynngililkdkivi....knggttqsysysdledqkltk 140
                  + +++i++  +l+++ +p + + + ++++ ++++ ii+++  t++ D+s+ +d++++++  ++i+ l+ k ++    ++ g+ + ++++++++  l+k
  CCD25521.1 269 PNSKEIISSGINLFNNHFPLIPVPKSKINYIQESNRIITTNTNTVTADDSNRIDTNNMRESSDNIITLNFKRLVpldpSKRGSREIQYNKQINQYYLNK 367
                 56788999999**********************99999*******************999988888877766666897666666666666666656666 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.1
     DUF1189 137 kltkedlreflssvksilkiilvlil 162
                  ++++dl+++  s++++ +i+++ ++
  CCD25521.1 453 RFNQNDLVQMCISMAEFRPIFIACSV 478
                 78999999999999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1689  (0.0942049); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4226.73
//
Query:       CCD25522.1  [L=382]
Description: hypothetical protein NDAI_0F02040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.6e-28   97.9   0.0      5e-28   97.1   0.0    1.5  1  tRNA_bind       Putative tRNA binding domain
  ------ inclusion threshold ------
      0.023   14.7   0.0      0.051   13.6   0.0    1.6  1  GST_C_2         Glutathione S-transferase, C-terminal domain
       0.05   12.9   0.0      0.098   12.0   0.0    1.4  1  Viral_protease  Papain like viral protease
      0.079   13.2   1.3       0.11   12.8   1.3    1.3  1  GAGA_bind       GAGA binding protein-like family
       0.14   11.3  17.0       0.32   10.1  13.6    2.1  2  Med3            Mediator complex subunit 3 fungal


Domain annotation for each model (and alignments):
>> tRNA_bind  Putative tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   1.4e-31     5e-28       1      96 []     219     313 ..     219     313 .. 0.98

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 1.4e-31
                 EEEEEEEEEEEETTSSTEEEEEEEESSSS.EEEEEESCTTTSTHHHHTTEEEEEETTSESEEETTEEESSEE-EEECCESSCEEEEEESST--TTCE CS
   tRNA_bind   1 lrvGkvleaeehpnadkLlvlkvdvGeee.prqivsgaknvyepeelvakkvvvvanlkpkklrGveSeGMilsaeeldekevgilelpadveaGek 96 
                 +rvG + +a +hp+ad+L+v ++dvG++e pr+++sg++++ + e+++++ vvvv+nlkp ++rG++S +M+l+a+   +++v+++e+p+ ++aG+k
  CCD25522.1 219 FRVGFIQKAIKHPDADSLYVSTIDVGDAEgPRTVCSGLVKHFPLEAMQERYVVVVCNLKPVNMRGIKSTAMVLCAS--TDEKVEFVEPPKGSKAGDK 313
                 69**************************************************************************..7***************985 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   1.4e-05     0.051       8      67 ..      40     105 ..      33     107 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.4e-05
                 HHHCCHCHHHCTTT---SS.CTTC.S--HHHHHHH....HHHHHHHHHHHS----...TT-HHHHHHH CS
     GST_C_2   8 leqldaaldaleahLadspflfGd.qptlaDiala....pflvrlraagpgfdir...eaypnlraWl 67 
                  ++l++ ld+l+  L+d +fl+   qpt+ D+ ++    p + +l   +   di+    +y ++ +W 
  CCD25522.1  40 TAELQENLDQLNLFLRDNSFLCATqQPTVTDVIVFepifPIVKQLVSSTK--DIKdvyNKYRHILRWS 105
                 57899*****************************9633344444444443..4442245777777776 PP

>> Viral_protease  Papain like viral protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.7e-05     0.098     153     220 ..     236     299 ..     233     316 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.7e-05
                     HHHTT--TTS-B-HHHHHHHHHTTBSSTTTCEEEEEEEECTTEEEEEEEECHHHHEEESSSSHHHHHC CS
  Viral_protease 153 yavarkkvGdlgDaeetltkLakhldaeaakrllkksvcveCgakktelagveavivvaavkldnlkt 220
                     ++v++  vGd    + + + L kh+ +ea +   ++ v v C+ k  +++g++++ +v   + d+ k+
      CCD25522.1 236 LYVSTIDVGDAEGPRTVCSGLVKHFPLEAMQ---ERYVVVVCNLKPVNMRGIKSTAMVLCASTDE-KV 299
                     7999***********************9865...4567889***********9876544444443.44 PP

>> GAGA_bind  GAGA binding protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.3     3e-05      0.11      91     208 ..     132     254 ..      16     258 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 3e-05
   GAGA_bind  91 lleednalaalqmlrplesqlqeaeapelekeevasselveesavveke.eaakkrqq..gkrpkepkakkakkaarkpkeegedlalkka........ 178
                 ++e+            +++ +  a a++ ++ e +++ + ++++++e + +  k+ ++  +k + e+kakka+k+a++++ + e++++  a        
  CCD25522.1 132 IIEK------------KKKPAVAAAAADAKTAEATTPAAAKDKPAKEAKgPRGKPDEEtlKKLREEAKAKKAAKKAAQATAQAEQAKK--Adempspsi 216
                 2222............222222222233444444444444444444433222222211001223334444444433333333332211..122345558 PP

   GAGA_bind 179 ........krsksekksvdlvingielDestiPipvCs 208
                         +++ ++ ++  l +  i++  ++ P  vCs
  CCD25522.1 217 idfrvgfiQKAIKHPDADSLYVSTIDVGDAEGPRTVCS 254
                 88888887666666677779999999999999999998 PP

>> Med3  Mediator complex subunit 3 fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  13.6   8.9e-05      0.32     169     239 ..     139     213 ..     129     234 .. 0.68
   2 ?    2.2   0.1     0.024        85      91     112 ..     335     356 ..     325     374 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 8.9e-05
        Med3 169 pn.atatigtptnsaaaaattatttssqakkPr.kPrqt..kk....aaakaaakaqaqaqaqaqaqqqvlanpnqvqt 239
                 p+ a+a+ +++t +a+++a++ + ++ +ak Pr kP     kk    a+ak aak  aqa aqa + ++     +++ +
  CCD25522.1 139 PAvAAAAADAKTAEATTPAAAKDKPAKEAKGPRgKPDEEtlKKlreeAKAKKAAKKAAQATAQAEQAKK----ADEMPS 213
                 4437788899999********************889754336755555555555544444444444333....333433 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.024
        Med3  91 leeLqPLfatveeysktaknkd 112
                  e+LqPLf+t  +    +k+++
  CCD25522.1 335 WEKLQPLFSTTSDLNVVFKDEE 356
                 699*******998876666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1849  (0.103129); expected 358.6 (0.02)
Passed bias filter:                      806  (0.0449551); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 2747.09
//
Query:       CCD25523.1  [L=446]
Description: hypothetical protein NDAI_0F02050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-10   40.5   7.2    6.2e-10   39.0   7.2    1.8  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   7.2   3.5e-14   6.2e-10       1      36 [.      16      50 ..      16      53 .. 0.93

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 3.5e-14
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfyses 36
                ++C+ Cr kK++Cd+ +P+Cs C k++ +C+ y+ +
  CCD25523.1 16 TGCWACRLKKRRCDELHPKCSLCMKHGDKCS-YDIR 50
                58*****************************.9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1277  (0.0712254); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3139.37
//
Query:       CCD25524.1  [L=502]
Description: hypothetical protein NDAI_0F02060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.2e-103  346.0  15.0   3.8e-103  345.8  15.0    1.0  1  Sugar_tr  Sugar (and other) transporter
    4.5e-34  117.9  12.8    4.5e-34  117.9  12.8    2.0  2  MFS_1     Major Facilitator Superfamily
    2.8e-06   26.9   4.6    2.8e-06   26.9   4.6    2.4  3  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
      0.011   15.4   0.3      0.017   14.8   0.3    1.2  1  ATG7_N    Ubiquitin-like modifier-activating enzyme ATG7 N-te
       0.32   11.2   0.0       0.32   11.2   0.0    2.7  3  DUF3180   Protein of unknown function (DUF3180)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.8  15.0  1.1e-106  3.8e-103       2     444 ..      28     493 ..      27     499 .. 0.93

  Alignments for each domain:
  == domain 1  score: 345.8 bits;  conditional E-value: 1.1e-106
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.......................HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHH CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskee....................ssvlsglivsiflvGaiiGslfagllgdrfGRkksll 80 
                 ++v++lg+++fgY+++ ++a++ ++++    +  +s++   +                    ++ ++g+++++f++G++iGs++ag l++r+GRk + l
  CCD25524.1  28 IFVTCLGPIQFGYHIAELNAPQQVMSCDDTATHPNSET--GSldthglgwlenhglkqcipmTDQQIGIVTAMFSIGGLIGSYYAGSLAERYGRKRVNL 124
                 5899**********************777766655554..33457****************************************************** PP

                 HHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHH CS
    Sugar_tr  81 iaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlv 179
                 i +++f   + l++++   n+v +li+gRvlvGi++G+  v++++yi+ iAp ++Rgal++++ql+i +Gil+++++ l+++++++   wr+ +++ ++
  CCD25524.1 125 INNFCFALFGSLCMFTA--NNVIMLILGRVLVGIAAGVSIVVTSLYINDIAPVEWRGALGTMNQLSINLGILLTQTVALKYADVHS---WRWIFFVGAF 218
                 *****988655555555..49*****************************************************************...********** PP

                 HHHHHHHHGGGS---HHHHHHTT-HHHHHHHHHHHHHC..HHHHHHHHHHHHHHHHHHH..................HTTHHHHSH...HHHHHHHHHH CS
    Sugar_tr 180 pallllilllflPESPrylvekgkeeeakevlaklrge..edadrelaeekdsleaeqeee.............kaswkellssktvrqrlligvvlqi 263
                  al  ++l++ ++ESPr+l+ ++++  a++ l+klr+   +++++el+ +++s++ e ++e             k ++ ++++s + +++   +  + i
  CCD25524.1 219 VALSNFVLWFKIEESPRWLLGHRDQTSAEKALYKLRNAtyQEVKQELQSWQRSIDSETDQEahnsninnnihtkKLTLLQYVKSSEFKKPREAISTILI 317
                 **********************************999999*****************99999******9887666666677777669************ PP

                 HHHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHH CS
    Sugar_tr 264 fqqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfial 362
                 +qq++Gin+i++y+ ++ ++l  ++ ++++++++++n+++tf++  +++rfGR++ll+ +a+ m+++ +i+  + +++++++     ++++ i+++i++
  CCD25524.1 318 GQQFCGINSIIFYGVRLVSELLPNQAVIINLGLSILNVIFTFISSSVIERFGRKPLLISSASAMSMMSFIIM-ISIMGEHAK-----LLVTSIYFYIIA 410
                 ***********************************************************************5.999999995.....************ PP

                 HHTTTTHHHHHHHHHHSH..TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT-- CS
    Sugar_tr 363 falgwgpvpwvlvsElfp..qsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrt 444
                 falg+gp+p++++ El++  ++ ++ a+++ +++nwla+f++++ fp++ + i  gyv+l+fa++a+ f+  +   +petkg+t
  CCD25524.1 411 FALGVGPIPFLIIGELSQdgNESKAMAQSYGTVCNWLATFVVGYGFPVLSKYID-GYVYLIFAIFAAWFAWHIKKAIPETKGKT 493
                 *****************93345677788899***********************.***************************98 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9  12.8   1.3e-37   4.5e-34      28     348 ..      74     448 ..      19     453 .. 0.75
   2 ?    0.5   1.1     0.063   2.3e+02     154     178 ..     461     485 ..     435     500 .. 0.51

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 1.3e-37
       MFS_1  28 g............ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlgagalfpagaaliadw 113
                 g            ++ ++ig++++++++g +++s+ +G+l++r+Gr+rv l+  ++fal++ l++f+++   +l+++rvl G++ag+++ +   +i d+
  CCD25524.1  74 GwlenhglkqcipMTDQQIGIVTAMFSIGGLIGSYYAGSLAERYGRKRVNLINNFCFALFGSLCMFTANNViMLILGRVLVGIAAGVSIVVTSLYINDI 172
                 15555556666668899*******************************************777777755555*************************** PP

       MFS_1 114 fpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee........................ 188
                 +p e rg    + +++++lG++l+  ++   a+  +Wr++f++ a+v+l  fv   l++  e+++r+   ++++                         
  CCD25524.1 173 APVEWRGALGTMNQLSINLGILLTQTVALKYADVHSWRWIFFVGAFVALSNFV---LWFKIEESPRWLLGHRDQTsaekalyklrnatyqevkqelqsw 268
                 *****************************************************...9*****************9****************99999999 PP

       MFS_1 189 .......................kgtgpaplvpawkallkdpvlw.....illialllfffgfsglltllplylqevlglsglllaglllallalvgai 259
                                        k       ++++++++++  +      i  i +   f+g++++ ++   ++ e l      +a+++   l+++++i
  CCD25524.1 269 qrsidsetdqeahnsninnnihtK------KLTLLQYVKSSE-FKkpreaISTILIGQQFCGINSIIFYGVRLVSELLP----NQAVIINLGLSILNVI 356
                 999999998888887775333222......333233333333.212334234444444488888888888885333333....4455555566666666 PP

       MFS_1 260 lallagrlsdrlgrrrrlllallllllaalglallavtssavllll..vlvliGfglgfvfpsllalasdla..ppeeagtasglfntagslg 348
                 + ++++ ++ r+gr++ l+ + ++++++++++++  + ++a ll+    +++i f+lg+  p+ + ++ +l   ++e  ++a+++ ++++ l+
  CCD25524.1 357 FTFISSSVIERFGRKPLLISSASAMSMMSFIIMISIMGEHAKLLVTsiYFYIIAFALGVG-PIPFLIIGELSqdGNESKAMAQSYGTVCNWLA 448
                 6899**********************************6666666634444466666654.33333333333223344444444444555555 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.063
       MFS_1 154 fyilaivsllafvlfllllpeeppe 178
                  yi + v+l+++++++++ +  +++
  CCD25524.1 461 KYIDGYVYLIFAIFAAWFAWHIKKA 485
                 3555555555555555555544444 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   4.6   7.7e-10   2.8e-06      26     166 ..      88     228 ..      81     256 .. 0.82
   2 ?   -1.5   0.5      0.33   1.2e+03     283     312 ..     311     343 ..     307     390 .. 0.61
   3 ?   -2.5   0.3      0.67   2.4e+03      93     119 ..     375     401 ..     347     412 .. 0.60

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 7.7e-10
       MFS_4  26 slsqagllaaaNylGYLvGalla.afalsagaeRlrllagllatvllllamaltesfaaflliRflaGvasAvvlvfgsslvlahaaaarrervgallf 123
                 +  q+g++ a+  +G L+G+  a + a + g++R+ l    + +    l m  ++++++++l R+l G+a++v +v++s  +   a    r+++g +  
  CCD25524.1  88 TDQQIGIVTAMFSIGGLIGSYYAgSLAERYGRKRVNLINNFCFALFGSLCMFTANNVIMLILGRVLVGIAAGVSIVVTSLYINDIAPVEWRGALGTMNQ 186
                 5678999*************9983457778899999999999999999**************************9999999988888999********* PP

       MFS_4 124 aGvGlGiavsgllvllllqlglsasslWlalavlsavllllva 166
                   + lGi+++ +++l   +   s+ ++ ++ a +++  ++l +
  CCD25524.1 187 LSINLGILLTQTVALKY-ADVHSWRWIFFVGAFVALSNFVLWF 228
                 **********9876544.4444566666666666666666544 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.33
       MFS_4 283 ivssvllGltflaita...lvlqlarelappat 312
                 ++s +l+G  f +i +   ++++l+ el p++ 
  CCD25524.1 311 AISTILIGQQFCGINSiifYGVRLVSELLPNQA 343
                 689999999999876611144444445555433 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.67
       MFS_4  93 vasAvvlvfgsslvlahaaaarrervg 119
                 ++sA ++ ++s +++  +    ++ + 
  CCD25524.1 375 ISSASAMSMMSFIIMISIMGEHAKLLV 401
                 456666666666665554444443333 PP

>> ATG7_N  Ubiquitin-like modifier-activating enzyme ATG7 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.3   4.7e-06     0.017     115     185 ..     194     278 ..     183     317 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.7e-06
                 GTT-EEEEEEEETTTTEEEEEE.EEEEE........E-SS--EEEE......EEEHHHHS-HHHHHHHHHHHHHHHHSTTTTT-- CS
      ATG7_N 115 lLssflllsFADLKkykFyYwf.afPal........klskpawvls.....eeksaseelsekeleslveavqklrkssderqeg 185
                 lL++ ++l +AD  ++++++ + af al          ++p w+l      + ++a ++l ++  +++++++q++++s d+++ +
  CCD25524.1 194 LLTQTVALKYADVHSWRWIFFVgAFVALsnfvlwfkIEESPRWLLGhrdqtSAEKALYKLRNATYQEVKQELQSWQRSIDSETDQ 278
                 799***************9877589999999999985588999988999999999999******************998776554 PP

>> DUF3180  Protein of unknown function (DUF3180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.3      0.61   2.2e+03      82      94 ..     152     164 ..     129     183 .. 0.64
   2 ?   -3.3   0.1       2.6   9.3e+03      95     122 ..     195     223 ..     189     228 .. 0.61
   3 ?   11.2   0.0   8.8e-05      0.32       7      60 ..     440     494 ..     435     500 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.61
     DUF3180  82 llaGvyaGllvyl 94 
                 +l+G+ aG+ +++
  CCD25524.1 152 VLVGIAAGVSIVV 164
                 3333333333322 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.6
     DUF3180  95 l.ragelpaaaedllaavvavlaavalvv 122
                 l ++  l++a  + ++ ++ v a val  
  CCD25524.1 195 LtQTVALKYADVHSWRWIFFVGAFVALSN 223
                 33666666777777777777766666654 PP

  == domain 3  score: 11.2 bits;  conditional E-value: 8.8e-05
     DUF3180   7 vaavagwllvrv.sygslpplpwlaavvllvlavvelvlAlqvrrrirgrpgarq 60 
                  + v+ wl++ v  yg  +  +++ + v l++a+  +++A+ +++ i + +g+ +
  CCD25524.1 440 YGTVCNWLATFVvGYGFPVLSKYIDGYVYLIFAIFAAWFAWHIKKAIPETKGKTD 494
                 5788999999998888888999************************977666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1288  (0.0718389); expected 358.6 (0.02)
Passed bias filter:                      633  (0.0353059); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 3563.80
//
Query:       CCD25525.1  [L=229]
Description: hypothetical protein NDAI_0F02070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-42  143.7   0.4    5.9e-42  143.4   0.4    1.1  1  HD_3      HD domain
    4.9e-13   49.2   0.2    6.4e-13   48.9   0.2    1.1  1  HD_2      HD containing hydrolase-like enzyme
    2.5e-06   27.7   0.2    4.4e-06   26.9   0.2    1.4  1  HD        HD domain


Domain annotation for each model (and alignments):
>> HD_3  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.4   0.4   9.8e-46   5.9e-42       1     148 [.      47     194 ..      47     210 .. 0.91

  Alignments for each domain:
  == domain 1  score: 143.4 bits;  conditional E-value: 9.8e-46
        HD_3   1 vekLKfqkRqgwlqtgrvreesvaeHmwrvalmalllseelkekvdiarvikmfLiHDlvEiltgDiispde.lakeekeeeekeaaerilkl....lp 94 
                 v++LK qkR+gwl++++++ es+a+Hm+r++lm++++++ l   v+++r++k +LiHD++E+l+gDi++ d  ++k ek+++e +++e ++k      +
  CCD25525.1  47 VQQLKLQKRTGWLDFQIIPCESIADHMYRMSLMTMIIKDPL---VNRDRCVKIALIHDIAESLVGDITPIDPfVNKVEKHRRELATIEHLCKElispYN 142
                 579**************************************...9**************************99***************99998443355 PP

        HD_3  95 eelaeellalweEFeeretkeakfakdlDklepllqalekegdslaafeaklsq 148
                 e+ ++e++++w E+ee  t e++++kd+Dk+e+llq +e e++++ +   +l++
  CCD25525.1 143 EKAGNEIMEYWLEYEEVRTLEGRYVKDIDKFEMLLQCFEFEKQYNGEK--NLQE 194
                 6699*************************************9998866..4444 PP

>> HD_2  HD containing hydrolase-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.2   1.1e-16   6.4e-13       2     178 ..      43     214 ..      42     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 1.1e-16
        HD_2   2 FfallsrlkyieR..walmrntreenvaeHslevaliahalalienkkfggkldaerlallalyHDasEiitGDlptpvKyanpeire...aykevEee 95 
                 Ff+l+++lk+ +R  w   +    e++a+H ++++l++   ++i++      ++ +r++++al+HD++E ++GD+ tp+  + +++++   +++++E+ 
  CCD25525.1  43 FFTLVQQLKLQKRtgWLDFQIIPCESIADHMYRMSLMT---MIIKDPL----VNRDRCVKIALIHDIAESLVGDI-TPIDPFVNKVEKhrrELATIEHL 133
                 99***********44444556778********998765...4567655....9*********************9.67766666665500055566655 PP

        HD_2  96 aeekllelLpeelreeyeella.deeaeeeekklvkaaDklsalikcleelkagnkeFeeakkeieeklkelelpevdyFleef 178
                   ++l++  +e+  +e+ e++   ee ++ e+++vk  Dk + l++c+e +k+ n e  +  +e  ++++ ++++ev+   +++
  CCD25525.1 134 -CKELISPYNEKAGNEIMEYWLeYEEVRTLEGRYVKDIDKFEMLLQCFEFEKQYNGE--KNLQEFFTAVDLIKTEEVKSWTDDL 214
                 .56788999999999999999548899999*******************99999987..5666777777777777777776665 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.2   7.3e-10   4.4e-06       3     121 ..      71     175 ..      69     176 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 7.3e-10
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH... CS
          HD   3 eHsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgldledvaklirehheswegkkrp... 98 
                 +H++++  ++  + + l    +r++++++aL+HDi++ ++gd               ++ ++ +++++   l     ++ +l +e   + + +k+    
  CCD25525.1  71 DHMYRMSLMTMIIKDPL---VNRDRCVKIALIHDIAESLVGD------------ITPIDPFVNKVEKHRREL----ATIEHLCKELISPYN-EKAGnei 149
                 78888887776666655...7********************9............344666666666665555....346666666666665.3333544 PP

                 H...HHHCCTSCHHHHHHHHHHHHHH CS
          HD  99 r...glaerqlslearivklaDrlaa 121
                 +    ++e+  +le r vk++D++++
  CCD25525.1 150 MeywLEYEEVRTLEGRYVKDIDKFEM 175
                 146689999**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1834.72
//
Query:       CCD25526.1  [L=447]
Description: hypothetical protein NDAI_0F02080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-30  106.5  11.6    1.3e-30  106.5  11.6    2.6  2  Glycos_transf_4  Glycosyl transferase family 4


Domain annotation for each model (and alignments):
>> Glycos_transf_4  Glycosyl transferase family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.7     0.014   2.6e+02     100     133 ..       7      39 ..       2      44 .. 0.60
   2 !  106.5  11.6   7.4e-35   1.3e-30      10     159 ..     135     303 ..     126     304 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.014
  Glycos_transf_4 100 lalvvlaavdgrsellllalallg.allGfllfNr 133
                      ++l+v+ ++ ++++++++  a +g ++lG+++ N+
       CCD25526.1   7 VLLAVILIYCSKQNSAVI--AAIGfSILGYFVTNW 39 
                      344444444455555555..4566599**999998 PP

  == domain 2  score: 106.5 bits;  conditional E-value: 7.4e-35
  Glycos_transf_4  10 lilllGflDDvlglkarlKlilqilaalililtld...........lslttlglllt........qvlielglilavlltllvivgvtNavNli 84 
                        +l+G++DD+++l++r+K++l ++ +l+l+l+++                     +         ++++lg +++v+++ + i++  N++N++
       CCD25526.1 135 STILIGIADDLFDLRWRHKFFLPVIGSLPLLLIYYvdfgvtyvlipG---------FikkyfnltATIVDLGGLYYVYMAAMGIFCP-NSINIL 218
                      5679****************************999775544444431.........24444444457********************.****** PP

  Glycos_transf_4  85 DGldGlaagvsiiialalvvla...........avdgrsellllalallgallGfllfNrypAkvFmGDsgslflGlvlavlailg 159
                      +G++Gl++g+si+i+++ ++             + + +  +++l++ +lg+ l+++ +Nr pAkvF+GD++ +f+G+v+av+ ilg
       CCD25526.1 219 AGVNGLEVGQSIVISILELLNDilyltwgspdgI-AAHRFSAVLIIPFLGVSLALWKWNRWPAKVFVGDTYCYFAGMVFAVVGILG 303
                      **************98766655666777666632.3333333444677777788****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      201  (0.0112109); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3279.79
//
Query:       CCD25527.1  [L=1084]
Description: hypothetical protein NDAI_0F02090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-73  247.2   0.5    1.9e-73  247.2   0.5    1.6  2  SNF2_N          SNF2 family N-terminal domain
    1.9e-29  102.0   2.3    1.9e-29  102.0   2.3    3.9  3  SLIDE           SLIDE
    1.4e-27   96.6   0.4    1.4e-27   96.6   0.4    4.2  5  HAND            HAND
    1.4e-20   73.7   0.6    8.6e-20   71.2   0.0    2.7  2  Helicase_C      Helicase conserved C-terminal domain
    1.4e-09   37.5   0.2    3.9e-09   36.1   0.2    1.7  1  HDA2-3          Class II histone deacetylase complex subunits
    6.9e-09   35.9   0.0    6.9e-09   35.9   0.0    3.9  6  ResIII          Type III restriction enzyme, res subunit
    0.00026   20.3   0.7    0.00026   20.3   0.7    2.1  2  ERCC3_RAD25_C   ERCC3/RAD25/XPB C-terminal helicase
    0.00037   20.3   0.0      0.001   18.9   0.0    1.8  1  DEAD            DEAD/DEAH box helicase
  ------ inclusion threshold ------
      0.055   13.6   5.0       0.31   11.2   5.0    2.4  1  NYD-SP28_assoc  Sperm tail C-terminal domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.2   0.5   9.3e-77   1.9e-73      50     349 ..     154     426 ..     136     427 .. 0.86
   2 ?   -3.6   0.3       1.8   3.5e+03     290     338 ..     572     622 ..     564     628 .. 0.58

  Alignments for each domain:
  == domain 1  score: 247.2 bits;  conditional E-value: 9.3e-77
                 HHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-----------.-- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
      SNF2_N  50 eakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapk.ll 147
                 ++++    GiLaDemGLGKT+q+++++    + +  +k         gp+++++P+s+l++W +ei++++++    +l +++++    +n+ v+++ l 
  CCD25527.1 154 SLHHYKLAGILADEMGLGKTLQTISFLG---YLRYVEKI-------PGPFIVIAPKSTLNNWLREINKWTPEVDAFILQGDKDE----RNQLVKERlLP 238
                 56778899********************...54445554.......59************************998776666654....44445554156 PP

                 ----EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 148 adydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllq 246
                  ++dvvi +Y+++ +e+      s + + +w+++++DE+h++kn++s ++++++++ +snr+++tGTP+qn+l++l++Ll+fL +++f + q fd++++
  CCD25527.1 239 CKFDVVIASYEIVIKEK------SSFRKFDWQYIIIDEAHRIKNEESLLSQVLREFTSSNRLLITGTPLQNNLHELWALLNFLLPDIFADSQDFDEWFS 331
                 899***********998......9*************************************************************************** PP

                 HHHH.HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHH CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 247 rpie.aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqac 344
                  + +   ++k +++L+++lq+++lrr k+dve +l pk+e  +++ +s++++k+Y+++l    k++ a+  ++       +++sk+++l+++++lr++c
  CCD25527.1 332 SETTeDDQDKIVKQLHTVLQPFLLRRLKNDVETSLLPKKELNLYVGMSSMQKKWYKQIL---EKDIDAVNGSNV------NKESKTRLLNIVMQLRKCC 421
                 *99846677889********************************************333...333333322222......22234669*********** PP

                 H---X CS
                 xxxxx RF
      SNF2_N 345 nhpql 349
                 nhp+l
  CCD25527.1 422 NHPYL 426
                 ***98 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.8
                 EE--HHHHHHHH....................HHHHHH-HHH-..HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxx RF
      SNF2_N 290 lklskverksYnrllevlrkkalakllkrseaalkssskskek..ilelll 338
                 +  ++ve+k+ +r+ ++lr + l   ++r   + k+++k+++k  +l++++
  CCD25527.1 572 VTNNSVEEKILERATQKLRLDQLVIQQNRTSLKKKKETKKESKdaLLSMIQ 622
                 555667777777777777776666666665555555554442245555554 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3      0.76   1.5e+03      21      65 ..     579     622 ..     570     629 .. 0.59
   2 ?    0.9   0.2      0.22   4.5e+02      22      81 ..     812     872 ..     797     876 .. 0.76
   3 !  102.0   2.3   9.4e-33   1.9e-29       1     114 []     897    1008 ..     897    1008 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.76
       SLIDE  21 kellkkkveqyknplqelkikyp.psnkgkkeyteeeDrfllvlla 65 
                 +++l++ +++++  l++l i+++ +s k+kke ++e   +ll +++
  CCD25527.1 579 EKILERATQKLR--LDQLVIQQNrTSLKKKKETKKESKDALLSMIQ 622
                 555555555544..46777776654555555556666666666654 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.22
       SLIDE  22 ellkkkveqyknplqelk..ikyppsnkgkkeyteeeDrfllvllakyGygnyekikkeire 81 
                 ++l+  ve+ ++pl+e +  +k +++ +g +++++ e r  +++  kyG ++ + i +++ +
  CCD25527.1 812 NMLRLSVEN-AQPLTEEEerLKAEWEVQGFTNWNKIEFRKFVNASGKYGRNSIQAIAMDLEQ 872
                 455555555.677766655689999999**********************999999988876 PP

  == domain 3  score: 102.0 bits;  conditional E-value: 9.4e-33
       SLIDE    1 ekiikqIekgekkieklkelkellkkkveqyknplqelkikyppsnkgkkeyteeeDrfllvllakyGygn...yekikkeiresplFrfDwflksr 94  
                  ek++k Ie++e+k++klk ++e+l++k++qy+np+ el++ +pp+      +++e+D fll +l kyG+++   y+ +k+eir++plF++D+ +ks 
  CCD25527.1  897 EKYLKIIETEEEKVNKLKYQQEALRRKLAQYQNPMFELEFLHPPK----Y-FSKEQDVFLLLMLFKYGLDRsdvYDLMKDEIRDCPLFEIDFGFKSK 988 
                  7**************************************999774....4.9******************99************************* PP

       SLIDE   95 tpqelqkRcetLlklvekel 114 
                  t++el++R ++Ll+++e+e+
  CCD25527.1  989 TSTELARRTQVLLQCLEREF 1008
                  ******************96 PP

>> HAND  HAND
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   4.1      0.61   1.2e+03      66     108 ..      79     119 ..      60     122 .. 0.68
   2 ?   -3.4   1.1       8.1   1.6e+04      77     102 ..     583     609 ..     549     616 .. 0.49
   3 !   96.6   0.4   7.2e-31   1.4e-27       1     111 []     727     839 ..     727     839 .. 0.93
   4 ?   -3.4   0.5       8.2   1.6e+04      97     109 ..     905     917 ..     877     926 .. 0.61
   5 ?   -1.6   1.3       2.3   4.6e+03      64      95 ..    1023    1044 ..     981    1057 .. 0.41

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.61
                 HTTTS-SS.STTCHHHHHHHHHHHCT--SSS-CCHHHHHHHHH CS
        HAND  66 kkeeeeeeekeeereekrkeeqekidnaepLteeeeeekeell 108
                  +++   ++ ++++ ++r+ + e+ ++ae L eee++e e+ l
  CCD25527.1  79 LDDDA--FKGKSSDGDRRRRKTEREEDAELLKEEEQAEEESDL 119
                 33333..334567777888888888999*******99988655 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.1
                 TCHHHHHHHHHHHCT--S.SS-CCHHH CS
        HAND  77 eereekrkeeqekidnae.pLteeeee 102
                 e +++k +++q  i++ +  L  + e+
  CCD25527.1 583 ERATQKLRLDQLVIQQNRtSLKKKKET 609
                 344555555555554332023333222 PP

  == domain 3  score: 96.6 bits;  conditional E-value: 7.2e-31
                 XXXXXXXXXXXX..X----.--S--------GGC--S--CCHHHHHHHHHHHHHHCCT----CCCHTTTS.-SS....STTCHHHHHHHHHHHCT--SS CS
        HAND   1 SvDkYYkdvlktgskkstkkpkapraPKqiniqdfqffpkeLkeLqekEqlaykKkigykvtlddkkeee.eeee...keeereekrkeeqekidnaep 95 
                 SvD YYkdvl+tg+++s  +p++ r+PK + ++++q++p +Lk L+ekE+l+ +Kk  y +t+dd+k+   +e++   +e+ +e+k ++ + +++na+p
  CCD25527.1 727 SVDGYYKDVLQTGGRSS--TPSHTRMPKLHYFSSHQLQPVQLKVLYEKERLWNAKKARYIPTMDDFKSVFgNEDSlseTEDVKEQKLNMLRLSVENAQP 823
                 9***********99988..69*********************************************99886555477677889999999********** PP

                 S-CCHHHHHHHHHHHS CS
        HAND  96 Lteeeeeekeellseg 111
                 Lteeee++k+e++ +g
  CCD25527.1 824 LTEEEERLKAEWEVQG 839
                 ************9886 PP

  == domain 4  score: -3.4 bits;  conditional E-value: 8.2
                 -CCHHHHHHHHHH CS
        HAND  97 teeeeeekeells 109
                 teee+ +k ++ +
  CCD25527.1 905 TEEEKVNKLKYQQ 917
                 3444444433333 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 2.3
                  CCHTTTS-SS.STTCHHHHHHHHHHHCT--SS CS
        HAND   64 ddkkeeeeeeekeeereekrkeeqekidnaep 95  
                  ++          e+er ++ +ee e+ ++  +
  CCD25527.1 1023 EE----------EDERGKRMREEYEQENDTSN 1044
                  11..........12222222222222222222 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   4.3e-23   8.6e-20       2     111 .]     448     561 ..     447     561 .. 0.91
   2 ?   -2.0   0.4       2.3   4.6e+03      11      70 ..     573     629 ..     564     646 .. 0.69

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 4.3e-23
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHT.TSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESSSS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlek.vklllekk.gikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfdlp 94 
                 kl+ l +ll k++eeg+++lif++  + l+   ++    + g+k+++++g++ +++r+++++++n   ++++ +L++t++++ Gi+++++n V+ +d +
  CCD25527.1 448 KLKVLDKLLkKMKEEGSRVLIFSQMSRVLDIlEDYC--YFrGYKYCRIDGSTDHEDRIQAIDDYNapdSEKFIFLLTTRAGGLGINLTSANIVVLYDSD 544
                 788999999999***************996654444..4469***********************88778888************************** PP

                 SSHHHHHHHHTTSSSTT CS
  Helicase_C  95 rnvtsyiqriGRtgRag 111
                 +n++   q+++R++R+g
  CCD25527.1 545 WNPQADLQAMDRAHRIG 561
                 ***************97 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.3
                 HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEE CS
  Helicase_C  11 kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvL 70 
                 +++++++kil  ++++ rl+  +l+  +++ ++++   e++++++++ l+  ++g  dv 
  CCD25527.1 573 TNNSVEEKILERATQKLRLD--QLV-IQQNRTSLKKKKETKKESKDALLSMIQHGAADVF 629
                 55666666666666666776..555.3455788888888999999999988888877765 PP

>> HDA2-3  Class II histone deacetylase complex subunits 2 and 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.2     2e-12   3.9e-09       8     256 ..     374     594 ..     369     609 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 2e-12
                 EEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH.HHHHHHHH.HHHHHHH-GGGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHHTTS CS
      HDA2-3   8 lPtpltelqkelteqivslhyedllkyvetsdsqeklslsikslticlenlslvanHPsLLvdHympkklllkelpeklaetSgKFkvlndlvnliier 106
                 l ++++++qk  ++qi++      ++ +++++++++      +l+i++ +l+   nHP+L  d   p    +    e+l+++S+K+kvl +l++ + e+
  CCD25527.1 374 LYVGMSSMQKKWYKQILEKDIDA-VNGSNVNKESKT-----RLLNIVM-QLRKCCNHPYL-FDGAEPGPPYTT--DEHLIYNSAKLKVLDKLLKKMKEE 462
                 5689*************876544.445555554444.....4678888.999999****8.599999987765..58*******************999 PP

                 S....EEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-..................-SEEEEEEESS---TTTS--TT-S-EEEEEE-S CS
      HDA2-3 107 krksslnvlvvakskkeldLiEalllGkklkikrysgeklydekkkkskdtkknsrktkeklkkkihsltihllsttrqltkdksllenikfdliiafD 205
                        vl+ ++  + ld++E + + ++ k+ r +g +  ++  +   d+++              s ++++l ttr         + + +++++  D
  CCD25527.1 463 G----SRVLIFSQMSRVLDILEDYCYFRGYKYCRIDGSTDHEDRIQAI-DDYNAP-----------DSEKFIFLLTTRAGGLG---INLTSANIVVLYD 542
                 9....9*******************************99888888777.555544...........44789999999887544...55667799***** PP

                 ST--TTSHHHHHHH---.-------EEEEEETTSHHHHHHHHTS-TT-HHHH CS
      HDA2-3 206 ssvdtsspsveslrtqn.rkknklpiirlvpinSieHvkLcfkkdedepeyl 256
                 s+ +++ +   + r ++  +k+++ ++rlv+ nS+e   L++ +++ + ++l
  CCD25527.1 543 SDWNPQADLQAMDRAHRiGQKKQVRVFRLVTNNSVEEKILERATQKLRLDQL 594
                 ******99888888776234556*****************999666666665 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.2       6.8   1.4e+04      74     107 ..      72     107 ..      67     121 .. 0.58
   2 !   35.9   0.0   3.5e-12   6.9e-09       3     169 ..     140     300 ..     138     302 .. 0.78
   3 ?    3.3   0.2     0.037        74      44     117 ..     553     627 ..     549     663 .. 0.80
   4 ?   -2.7   0.1       2.6   5.1e+03      70     118 ..     786     828 ..     779     851 .. 0.62
   5 ?   -2.7   0.0       2.5     5e+03       5      21 ..     913     929 ..     909     952 .. 0.76
   6 ?   -3.3   0.2         4   7.9e+03      72     108 ..    1006    1045 ..     985    1061 .. 0.44

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6.8
                 GGGGTGG......GEEEESSS-B--.......-SEE CS
      ResIII  74 fkkflseayke..igkkvsgdkkkakekdstnkkil 107
                 fkk+l++ +++  +gk+ +gd++++k ++++++++l
  CCD25527.1  72 FKKVLESLDDDafKGKSSDGDRRRRKTEREEDAELL 107
                 555555555555577777777777744444444443 PP

  == domain 2  score: 35.9 bits;  conditional E-value: 3.5e-12
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseaykeigkkvsgdkkka.... 96 
                 +lr yQ++ ++ l+ +l+ + +  g+++ + G GKTl  +++  +l+  +k+   f++++p+ +l + +l+e++k+++e +++   +++gdk+++    
  CCD25527.1 140 QLRTYQIQGLNWLI-SLH-HYKLAGILADEMGLGKTLQTISFLGYLRYVEKIPgPFIVIAPKSTL-NNWLREINKWTPEVDAF---ILQGDKDERnqlv 232
                 799******99888.666.8999**************9988888888776666699999998877.67999*******99655...4555555553333 PP

                 ........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.TTHHHHHT---SEEEEEESS- CS
      ResIII  97 .kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.swreilekfkeavllglTATp 169
                  ++    + ++++++++ + +++        ++++   ++iiiDEaHr++ ++    ++l+ f ++ +l +T+Tp
  CCD25527.1 233 kERLLPCKFDVVIASYEIVIKEK-------SSFRKFDWQYIIIDEAHRIKNEEsLLSQVLREFTSSNRLLITGTP 300
                 33444457777777777777776.......666666777***********98536778****************9 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.037
                 HHHHH-S.......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHT CS
      ResIII  44 lierllkkgkee..kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldad 117
                 +++r ++ g+++  +++ lv ++s+ e+ le+ ++ l  ++  i+++ ++ kkk+ e ++++k+ l++ iq   ad
  CCD25527.1 553 AMDRAHRIGQKKqvRVFRLVTNNSVEEKILERATQKLRLDQLVIQQNRTSLKKKK-ETKKESKDALLSMIQHGAAD 627
                 556666655555569999************9999988888888888888888888.88888889999988876555 PP

  == domain 4  score: -2.7 bits;  conditional E-value: 2.6
                 HHHHGGGGTGG.....GEEEESSS-B--.......-SEEEEEHHHHHHTH CS
      ResIII  70 tleefkkflseayke.igkkvsgdkkkakekdstnkkilvttiqsldads 118
                 t+++fk+++ ++++  ++++v+++k        +  ++ v++ q l++++
  CCD25527.1 786 TMDDFKSVFGNEDSLsETEDVKEQKL-------NMLRLSVENAQPLTEEE 828
                 45677777766643334444444444.......44666666666666655 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 2.5
                 -HHHHHHHHHHT..... CS
      ResIII   5 reyQeeaienlleklks 21 
                  +yQ+ea+++ l+++++
  CCD25527.1 913 LKYQQEALRRKLAQYQN 929
                 689*****999888764 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 4
                  HHGGGGTGG........GEEEESSS-B--............-SEEE CS
      ResIII   72 eefkkflseayke....igkkvsgdkkka.....kekdstnkkilv 108 
                  +ef++ +  +++     ++++       +     +e++++n    +
  CCD25527.1 1006 REFNQPIALTNEVklrmEEEDE------RgkrmrEEYEQENDTSNI 1045
                  4454443333211222111111......111122233333333333 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.7   1.3e-07   0.00026      39     138 ..     442     548 ..     437     630 .. 0.75
   2 ?   -3.8   0.1       2.9   5.8e+03     186     239 ..     981    1035 ..     973    1045 .. 0.58

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.3e-07
  ERCC3_RAD25_C  39 yvmnpnkfracefLikyhekrgDkiivfsDn..vf.aLkeyakklkkpy..iyGetseaerlkilqkfkknpkvntifl..skvgDtsiDlPeanv 127
                    ++ n+ k+++++ L+k  ++ g ++++fs    v   L++y     ++y  i G+t++++r++ ++++++ ++ + ifl   + g   i+l +an+
     CCD25527.1 442 LIYNSAKLKVLDKLLKKMKEEGSRVLIFSQMsrVLdILEDYCYFRGYKYcrIDGSTDHEDRIQAIDDYNAPDSEKFIFLltTRAGGLGINLTSANI 537
                    578*************************9852233156777766555554499*****************9999999985568999********** PP

  ERCC3_RAD25_C 128 liqisshfgsr 138
                    ++  +s+   +
     CCD25527.1 538 VVLYDSDWNPQ 548
                    99888876543 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2.9
  ERCC3_RAD25_C  186 vdqGYafkviteleeleeee.elaystkeeqkellqkvlaakdeeaeeeelekel 239 
                     +d G+  k  tel++ ++   ++  ++ ++   l ++v+ + +ee+e+ ++ +e+
     CCD25527.1  981 IDFGFKSKTSTELARRTQVLlQCLEREFNQPIALTNEVKLRMEEEDERGKRMREE 1035
                     6677777777777655443224555555666777788877766665554443332 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0     5e-07     0.001      19     149 ..     164     288 ..     146     308 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5e-07
                 EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH...TTCSEEEEEHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxx RF
        DEAD  19 vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld...ngvdivvgtpgrlddllst 114
                 +a e G GKTl  +  +    y   +k     ++++P   L ++ l++++k++ ++d  +  + g++++r+ql k +   ++ d+v++  + +++  ++
  CCD25527.1 164 LADEMGLGKTLQTISFLGYLRY--VEKIPGPFIVIAPKSTL-NNWLREINKWTPEVD--AFILQGDKDERNQLVKERllpCKFDVVIASYEIVIK--EK 255
                 5678899***985544443333..267777899999*9988.678999999999877..32234555555555444334588***********99..55 PP

                 TSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 115 gklnlsqvrflVlDEadrlldqgfsdfinrilnql 149
                  +++  + +++++DEa+r+ ++  +  ++++l+++
  CCD25527.1 256 SSFRKFDWQYIIIDEAHRIKNE--ESLLSQVLREF 288
                 566677889**********998..66677766666 PP

>> NYD-SP28_assoc  Sperm tail C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   5.0   0.00016      0.31      17      59 ..     886     927 ..     874     928 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
  NYD-SP28_assoc  17 lWdalekaLekYhevLteRaklieetesLekqNeeLrnlLkqy 59 
                     +W  l + Le+Y + L+  ++  e++ +L+ q e Lr+ L qy
      CCD25527.1 886 FWANL-EMLEDYEKYLKIIETEEEKVNKLKYQQEALRRKLAQY 927
                     56555.58**********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1084 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1275  (0.0711138); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.80u 0.26s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 7731.48
//
Query:       CCD25528.1  [L=383]
Description: hypothetical protein NDAI_0F02100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0012   19.6   8.2        4.3    8.4   0.0    5.3  6  WD40         WD domain, G-beta repeat
     0.0027   18.0   0.2       0.77   10.1   0.1    2.5  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00048       4.3      13      38 .]      68      94 ..      54      94 .. 0.75
   2 ?   -1.4   0.0      0.57   5.2e+03       6      20 ..     110     124 ..     106     125 .. 0.67
   3 ?    2.5   0.0     0.035   3.1e+02      19      35 ..     205     221 ..     185     224 .. 0.83
   4 ?    2.3   0.0     0.041   3.7e+02      20      38 .]     254     273 ..     232     273 .. 0.67
   5 ?   -3.2   0.0         2   1.8e+04      24      32 ..     319     327 ..     315     328 .. 0.74
   6 !    6.7   0.4    0.0016        15       9      38 .]     353     382 ..     346     382 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00048
                EEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40 13 vtsla.fspdgawlasGsdDgtvriWd 38
                v +l+ ++ d+++lasG+  g++++W+
  CCD25528.1 68 VLDLKlNPFDNSLLASGHSTGNIMLWK 94
                556667788889999**88*******6 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.57
                 EEESSSSEEEEEEET CS
        WD40   6 tltGHssvtslafsp 20 
                 ++++ + vtsl +sp
  CCD25528.1 110 IFETDKLVTSLHWSP 124
                 55444349***9988 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.035
                 ETTSSEEEEEETTSEEE CS
        WD40  19 spdgawlasGsdDgtvr 35 
                 sp  + +++G+dD t++
  CCD25528.1 205 SPFENVVFTGGDDATIM 221
                 77888899*****9996 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.041
                 TTSSE.EEEEETTSEEEEEE CS
        WD40  20 pdgaw.lasGsdDgtvriWd 38 
                 ++ ++ l++Gs+D  +r +d
  CCD25528.1 254 SNRPMsLITGSYDDYIRSFD 273
                 444445789******99776 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 2
                 EEEEEETTS CS
        WD40  24 wlasGsdDg 32 
                 +l+++++Dg
  CCD25528.1 319 LLVCCMYDG 327
                 578888887 PP

  == domain 6  score: 6.7 bits;  conditional E-value: 0.0016
                 SSSSEEEEE..EETTSSEEEEEE.TTSEEEEEE CS
        WD40   9 GHssvtsla..fspdgawlasGs.dDgtvriWd 38 
                 GH    s++   + d++++a++s +D++v  W+
  CCD25528.1 353 GH---ESMCygGDWDSDFIATCSfYDKSVQKWN 382
                 66...3333337789999**99868****9997 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0028        25      36      70 ..      63      98 ..      45     109 .. 0.80
   2 !   10.1   0.1   8.6e-05      0.77      36      91 ..     112     170 ..     104     171 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0028
  ANAPC4_WD40 36 kedsevrsLaWkp.dgklLavaysdgevrlldaesg 70
                 ++ + v +L+ +p d++lLa ++s g++ l +++s+
   CCD25528.1 63 DTYGAVLDLKLNPfDNSLLASGHSTGNIMLWKVSSE 98
                 555677788887747889************887664 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 8.6e-05
  ANAPC4_WD40  36 kedsevrsLaWkpd.gklLavaysdgevrlldaesgkvvhslsvksek...avtclgWge 91 
                  ++d+ v+sL+W+p   +++++    ge+  +d+e++ +++s++ + ++   +v +l+W+e
   CCD25528.1 112 ETDKLVTSLHWSPLvKNFMMITNTAGEMATIDIETQ-MISSFNSGLSStstHVDTLTWKE 170
                  56999*******9736789999999********986.56666655444445799999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       398  (0.0221987); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2857.69
//
Query:       CCD25529.1  [L=643]
Description: hypothetical protein NDAI_0F02110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-16   59.6   0.2    1.7e-14   53.9   0.0    2.6  2  MMR_HSR1     50S ribosome-binding GTPase
    2.8e-08   33.4   0.2    1.5e-05   24.6   0.0    2.3  2  FeoB_N       Ferrous iron transport protein B
    2.9e-08   33.8   0.2     0.0067   16.3   0.0    2.4  2  RsgA_GTPase  RsgA GTPase
      0.004   16.5   0.0     0.0086   15.4   0.0    1.5  1  AIG1         AIG1 family
     0.0042   17.2   0.5      0.047   13.7   0.1    2.8  2  Dynamin_N    Dynamin family


Domain annotation for each model (and alignments):
>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.028     1e+02      70     114 .]     192     237 ..     178     238 .. 0.66
   2 !   53.9   0.0   4.7e-18   1.7e-14       1      57 [.     343     397 ..     343     427 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.028
                 HHHHHCTSEEEEEEETTTTCSHHHHHHHHHHHHH..TTSEEEEEEES CS
    MMR_HSR1  70 flaleeadlillvvdaseeklkpldeeleellee..akkplilvlnk 114
                 ++ +e++dl++ +vda+ + l     +le++ +e  ++k+ +l++nk
  CCD25529.1 192 WRVVERSDLVVQIVDAR-DPLLFRSVDLERYVKEldERKQNLLLVNK 237
                 4446779********88.54444556666666555444455556665 PP

  == domain 2  score: 53.9 bits;  conditional E-value: 4.7e-18
                 EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvklkgkeielvDtpGli 57 
                 ++++vG+pNvGKS+ in+l+g+ k+ vs++pg+T++ ++++++   +++ l+D+pGl+
  CCD25529.1 343 QIGLVGYPNVGKSSTINSLVGAkKVSVSATPGKTKHFQTIKLS---DSVLLCDCPGLV 397
                 599******************9789*****************8...69********85 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0013       4.8      76     153 ..     195     275 ..     178     278 .. 0.77
   2 !   24.6   0.0   4.1e-09   1.5e-05       2      57 ..     343     396 ..     342     421 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0013
                 CTSSSEEEEEEEGGG..HHHHHHHHHHHHHTT..SSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH CS
      FeoB_N  76 eeepdvvvnvvdatn..lernLyLtlqllelg..vpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieell 153
                  e+ d+vv++vda    l r++ L   + el+  ++ +l +n+ d +++k  +i+ +k  ++ g+     sa + +++ el+
  CCD25529.1 195 VERSDLVVQIVDARDplLFRSVDLERYVKELDerKQNLLLVNKADLLTRK-QRIEWTKYFNSKGISFTFYSALRANQLLELQ 275
                 5789*********865589**9999888888644788999*****99765.5677777777777777777777777776666 PP

  == domain 2  score: 24.6 bits;  conditional E-value: 4.1e-09
                 EEEEEESTTSSHHHHHHHHHTTS.EEEEESTTSSSEEEEEEEEETTEEEEEEE---- CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgak.qkvgNwpGvtvekkegklklkgkeveivDlPGi 57 
                 ++ lvG pnvGk++ +n+l gak  +v+  pG+t   ++ kl+   ++v ++D PG 
  CCD25529.1 343 QIGLVGYPNVGKSSTINSLVGAKkVSVSATPGKTKHFQTIKLS---DSVLLCDCPGL 396
                 689******************97369********998888888...8999******6 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   4.7e-06     0.017      30      99 ..     213     280 ..     183     283 .. 0.85
   2 !   16.3   0.0   1.9e-06    0.0067     104     161 ..     346     396 ..     300     402 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.7e-06
                  --HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  30 lslnlldrfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkd 99 
                  +++  l+r++ ++ e++   ++++nK+Dll++++   e+ + +++ g+++++ sa + ++l el+++l+d
   CCD25529.1 213 FRSVDLERYVKELDERKQ-NLLLVNKADLLTRKQ-RIEWTKYFNSKGISFTFYSALRANQLLELQNELSD 280
                  667789999988887775.56778**********.999****************************9987 PP

  == domain 2  score: 16.3 bits;  conditional E-value: 1.9e-06
                  EECSTTSSHHHHHHHHCTT-----S--------------SEEEEEETTTEEEESS-SS CS
  RsgA_GTPase 104 lvGqSGvGKStLinallpelelktgevseklgrGkhTTtavellelaegglliDtPGf 161
                  lvG   vGKS+ in+l++      ++vs +   Gk  T++ + ++l+++ ll+D PG+
   CCD25529.1 346 LVGYPNVGKSSTINSLVGA-----KKVSVSATPGK--TKHFQTIKLSDSVLLCDCPGL 396
                  788889************9.....45555556666..999*****************8 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.4e-06    0.0086       2      59 ..     343     396 ..     342     410 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.4e-06
                 EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-EEEEEEETTEEEEEEE--SC CS
        AIG1   2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcqkksrtwdgkkinViDTPgl 59 
                 +i lvG   +GkS+T+Ns++g k  + ++ + + tk++q+    +   ++   D Pgl
  CCD25529.1 343 QIGLVGYPNVGKSSTINSLVGAKKVSVSA-TPGKTKHFQT---IKLSDSVLLCDCPGL 396
                 5779*****************99877773.4444544444...445566777777777 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.22     8e+02     126     167 ..     195     238 ..     183     239 .. 0.85
   2 !   13.7   0.1   1.3e-05     0.047       1      75 [.     344     541 ..     344     566 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.22
                 HSTTEEEEEEEETTS..-CCC-CHHHHHHHHSTTBTTEEEEEE- CS
   Dynamin_N 126 ikkadiilavtsanh..dlsnsealflarevdpkgkrtivvltk 167
                 ++++d+++ +++a     + +++ ++  +e+d+++++ + v+++
  CCD25529.1 195 VERSDLVVQIVDARDplLFRSVDLERYVKELDERKQNLLLVNKA 238
                 5789999999999995456778999999******9999999976 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.3e-05
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS.---S-EEEEE.......................................................... CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnp.tTrrplelql.......................................................... 40 
                 i +vG  + GKSS +n+L+g++   ++++p  T  + +++l                                                          
  CCD25529.1 344 IGLVGYPNVGKSSTINSLVGAKKVSVSATPgKTKHFQTIKLsdsvllcdcpglvfpnfaynkgelvcngvlpidqlrdfigpctlvaeripkffieavy 442
                 789999**************9877777765268888888886666666666666666666666666666666666666666666666666666666666 PP

                 .....................................................................CCT---CCS...SSEEEET-EB--CHHHHH CS
   Dynamin_N  41 .....................................................................geeeeaseravkeelkekekkledfsevre 70 
                                                                                      +e+++      +ee ++++++l+ f+++ e
  CCD25529.1 443 gihiqtkskeeggngeiptaqellvayarargymtqgygsadesrasryilkdyvngkllyinppphleDETPY-----TTEECQKFNEELYTFEKLPE 536
                 66666666666666666666666666666666666666655555555555555555555555555443333333.....44555555555555555555 PP

                 HHHHH CS
   Dynamin_N  71 eieke 75 
                 + +++
  CCD25529.1 537 NRQEQ 541
                 55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1019  (0.0568353); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4444.37
//
Query:       CCD25530.1  [L=59]
Description: hypothetical protein NDAI_0F02120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-20   70.7   0.2    9.6e-20   70.5   0.2    1.0  1  SRP1_TIP1  Seripauperin and TIP1 family


Domain annotation for each model (and alignments):
>> SRP1_TIP1  Seripauperin and TIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.2   5.4e-24   9.6e-20      41      92 ..       1      52 [.       1      58 [. 0.95

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 5.4e-24
   SRP1_TIP1 41 lPsgvlsvyaalatatddsYttllseidfaevssmitglPWYssRLepaies 92
                +P+ +l+++ alat td+sY tl+se+df++v+smit+lPWYs+RLep+i s
  CCD25530.1  1 MPATILDIGLALATVTDNSYATLYSEVDFTGVQSMITKLPWYSTRLEPEILS 52
                7************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       286  (0.0159518); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.24s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 451.37
//
Query:       CCD25531.1  [L=480]
Description: hypothetical protein NDAI_0F02130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.1e-122  408.9   0.0   1.8e-122  408.2   0.0    1.3  1  Bystin           Bystin
  ------ inclusion threshold ------
      0.086   12.2   0.0       0.19   11.1   0.0    1.5  1  TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal reg


Domain annotation for each model (and alignments):
>> Bystin  Bystin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.2   0.0    2e-126  1.8e-122       4     289 ..     153     464 ..     151     467 .. 0.94

  Alignments for each domain:
  == domain 1  score: 408.2 bits;  conditional E-value: 2e-126
      Bystin   4 rktLadlilekieekeaekesklekee................eeeeeeeldpkvvevYekvgelLsrYksGklpkafkilpslknWeellaltePekW 86 
                 + +Lad+i++ i+eke++ ++++ ++                 +++e ++l++kv+++Y++vg++L+++++Gklpk fk++psl+nW+++l++t+Pe+W
  CCD25531.1 153 SYNLADKIMASIREKESQLQNTEPSDIaiegteqgahqetsgmRSTEGVALPEKVIRAYTTVGSILKTWTHGKLPKLFKVIPSLRNWQDVLYVTNPEAW 251
                 579**************9996654433689999*****99999888999************************************************** PP

      Bystin  87 tpnavyeatrifvsnlkekkaqrflelvllprvrddieen..kkLnvhlyeaLkkalykpaaffkgillPLvesgtctlreaaivgsvlakvsipvlhs 183
                 +pn+vyeat++fvsnl++k+ q+f++lvll+r+rd+ie++  +kLn+h+y+aLkk+lykp+affkg+l+PLve+g c++rea+i gsvlakvs+p+lhs
  CCD25531.1 252 SPNVVYEATKLFVSNLSAKESQKFINLVLLERFRDNIETSddHKLNYHIYRALKKSLYKPSAFFKGFLFPLVETG-CNIREATIAGSVLAKVSVPALHS 349
                 *************************************96555********************************9.*********************** PP

      Bystin 184 aaallklaeleysgatslfirvlldKkyaLpykvvdalvfhFlrfr.........eekrelpvlwhqsllvfaqrYknditedqkeaLldllkkkkhkk 273
                 +aal  l++l++s+at++fi++lldKkyaLpy++vd++v++F+rfr         + +r lpv+wh+++l+faqrYkndit+dq+++Ll+ +++++hk+
  CCD25531.1 350 SAALSYLLRLPFSPATTVFIKILLDKKYALPYQTVDECVYYFMRFRilddgsngeDAARVLPVIWHKAFLTFAQRYKNDITQDQRDFLLETVRQRGHKD 448
                 **********************************************77655544333778*************************************** PP

      Bystin 274 itpeirrellasksrg 289
                 i+peirrella++sr+
  CCD25531.1 449 IGPEIRRELLAGNSRE 464
                 *************997 PP

>> TcdB_toxin_midN  Insecticide toxin TcdB middle/N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.1e-05      0.19      61      94 ..      10      46 ..       2      59 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 2.1e-05
  TcdB_toxin_midN 61 sllgkpgLLkkidnelGgtteveYapssa...ekres 94
                     ++ +   LLk id ++G   +++Y++s +   e++e+
       CCD25531.1 10 RKQRHDPLLKDIDSAQGNLKKIKYKKSLQggdEDNED 46
                     3467788********************9955555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1195  (0.0666518); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3352.75
//
Query:       CCD25532.1  [L=557]
Description: hypothetical protein NDAI_0F02140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-44  151.5   0.0    1.1e-43  149.4   0.0    2.0  1  His_biosynth   Histidine biosynthesis protein
    6.5e-22   78.2   0.0    1.3e-21   77.3   0.0    1.4  1  GATase         Glutamine amidotransferase class-I
    1.6e-06   27.9   0.0    3.3e-06   26.8   0.0    1.4  1  GATase_3       CobB/CobQ-like glutamine amidotransferase doma
    1.5e-05   24.9   0.0     0.0092   15.8   0.0    2.3  2  SNO            SNO glutamine amidotransferase family
      0.004   16.9   0.4      0.033   13.9   0.4    2.1  1  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> His_biosynth  Histidine biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.4   0.0   2.9e-47   1.1e-43       1     229 []     244     537 ..     244     537 .. 0.89

  Alignments for each domain:
  == domain 1  score: 149.4 bits;  conditional E-value: 2.9e-47
                   EEEEEEEE...ETTEEEEECTTCS........TCEEEETTSHHHHHHHHHHHT-SEEEEEEHHHHC...TTHHHHHHHHHHHHHH-SSEEEEESS.. CS
  His_biosynth   1 riipalDl...kdGkvVrlvkGdr........fqelryagdpvelakryeeegadelhvvDldaak...egreanldlveeiaeevfipvqvGGG.. 81 
                   rii +lD+   ++G  V ++kGd+        +++ r  g+pv+la++y+ +gade++++ ++  +    + + +l+++++ a+++f+p++vGGG  
    CCD25532.1 244 RIIACLDVrsnDQGDLV-VTKGDQydvrekdsNNDVRNLGKPVQLAEKYYLQGADEITFLNITSFRdcpLKDTPMLQVLKNAAKTIFVPLTVGGGik 339
                   7*******777788888.89***99****9988899999************************999444567778899*****************88 PP

                   .........SSSHHHHHHHHHCT-SEEEESHHHHH-THH.............HHHHHHHHCGGGEEEEEEEEE..........C............. CS
  His_biosynth  82 .........Irsledveelleagadkviigtaavknpel.............ikelaekfgsqkivvaiDarr..........g............. 133
                            I  le +  ++++gadkv+igt av   e              i+ +++++g+q++v+++D +r          +             
    CCD25532.1 340 divdtdgtmIPALEVASLYFRSGADKVSIGTDAVFAAEKfyelggrgdgtspIETISKAYGAQAVVISVDPKRvyvdspndtkNktfktelpdsngr 436
                   8877777777888999999*************88665433444555555566999******************998877666516666777788899 PP

                   ....EEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHH.HTTCSEEEESHHHHT CS
  His_biosynth 134 ....ykvaikgwreetgldavelakkleelgageilltdidrdGtlsGpdleltkelaeavkipviasGGvgsledlkelk.segvdavivgsalye 225
                       y+++ikg+re+ +l + el ++++ lgageill+ id+dG+ sG+dlel+k  +eavkipvias G+g +++++e++ s+g+da++ + +++ 
    CCD25532.1 437 twcwYQCTIKGGRETRDLGVWELTRACAALGAGEILLNCIDKDGSNSGYDLELIKHAKEAVKIPVIASSGAGLPQHFEEAFtSTGADACLGAGMFHR 533
                   ***9*****************************************************************************78888**********9 PP

                   TSS- CS
  His_biosynth 226 gelt 229
                   +e+t
    CCD25532.1 534 EEYT 537
                   9985 PP

>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   3.5e-25   1.3e-21       2     187 ..       8     214 ..       7     216 .. 0.86

  Alignments for each domain:
  == domain 1  score: 77.3 bits;  conditional E-value: 3.5e-25
                 EEESSTSTHHHHHHHHHHTT-EEEEEETTSHHHHHHHTHHSTSEEEEEEESSCTT.......TTTHHHHHHHHCTSTS-EEEETHHHHHHHHHTTT... CS
      GATase   2 liDnydsvtenlvhalvelgvkvevvpidasaeeilellknpdgilvsgGpgspg.......vegkieaikearenkiPiLGICLGmQllaiefgr... 90 
                 +iD+++++ ++l++++  lg+kv++++   ++ e      n    l+ +G+g+ g         g  + +k+++ +++Pi+GIC G+Q+++  + +   
  CCD25532.1   8 VIDVESGNLQSLINSIEYLGYKVQLIKTA-QDPEL-----NKAERLILPGVGNYGhfvdnlfSRGFEQPLKQYIASGKPIMGICVGLQAMFAGSIEspq 100
                 89*************************54.66766.....67899999*********9999977777777777777**************988777666 PP

                 ....EEE..........EEECEEEEEEEEEEEETTTCGGTTTTSEEEEEEEEEEEEESG......CHHHTTEEEEEEEETTEEEEEEEEETTTEEEESS CS
      GATase  91 ....kvv..........kekekehhggtmrlgddetallyglknevierhrHryevnpk......elepaglevtakseddeelmeiiekknpfvgvQF 169
                     + +          +ek  ++ g+++ +++ e++ +ygl++  + ++ H+y++  +       + ++g++ + +   +ee+++++ ++n ++++QF
  CCD25532.1 101 ssglNYIsdmklsrfddSEKPVPEIGWNSCMEN-ENGFFYGLDPFKRYYFVHSYAALLNeriethLTKDEGWKLAKARYGSEEFIAAMWRDN-IFATQF 197
                 666533377778899998888***********9.77*******************8776779988888999***99999999*********9.****** PP

                 BTTSTTSTTHHHHHHHHH CS
      GATase 170 HPEststpegpellfnfl 187
                 HPE++ + +  +++ nfl
  CCD25532.1 198 HPEKSGKAG-LAVIDNFL 214
                 ***988765.77777765 PP

>> GATase_3  CobB/CobQ-like glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   9.3e-10   3.3e-06      25      94 ..      30      98 ..       9     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.8 bits;  conditional E-value: 9.3e-10
    GATase_3 25 vrvrfvplkdeslgedadlvilpGgkdtiqdlallresgldeaikeaaeaggpvlgiCGGlq.mLGeeied 94
                v+++    +d +l+ +a+ +ilpG  ++ +    l ++g+++ +k+++++g+p++giC Glq m+  +ie 
  CCD25532.1 30 VQLIKTA-QDPELN-KAERLILPGVGNYGHFVDNLFSRGFEQPLKQYIASGKPIMGICVGLQaMFAGSIES 98
                3333334.788885.5**********************************************444555555 PP

>> SNO  SNO glutamine amidotransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.6e-06    0.0092       6      81 ..      14      91 ..       9     114 .. 0.78
   2 !    6.7   0.0    0.0017       6.1     147     184 ..     174     215 ..     154     218 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.6e-06
                SSHHHHHHHHHHTTSEEEEE-SGGG..GCC-SEEEE-S.S-HHHHHHHHHHTT-HHHHHHHHHTT.--EEEETHHHHHH CS
         SNO  6 Gaveehveaikkclaenktvkrked..laevdaliiPG.GestamskliertglyedllefvknsekvvlGtCaGlill 81
                G+++  ++ i+  +++ + +k+ +d  l++ + li+PG G+   +   +   g+ ++l+++++ + k+++G C Gl  +
  CCD25532.1 14 GNLQSLINSIEYLGYKVQLIKTAQDpeLNKAERLILPGvGNYGHFVDNLFSRGFEQPLKQYIASG-KPIMGICVGLQAM 91
                6777788999999999999998775449*********9666666665556679**********99.*********9654 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0017
                 EEECTT..EEEEEE.ETTEEEESS-GGGSTT.HCHHHHHHHH CS
         SNO 147 lyeldg..eivvak.qkkilatsfhPelaed.dirvhdyfve 184
                 ++   g  e ++a  +++i+at fhPe + + +  v d f++
  CCD25532.1 174 AKARYGseEFIAAMwRDNIFATQFHPEKSGKaGLAVIDNFLK 215
                 44444555889999788**********885425667777665 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.4   9.2e-06     0.033      99     216 .]      72     200 ..      68     200 .. 0.56

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 9.2e-06
  Peptidase_C26  99 raalergvPilgiCrGlqllnvalGGtlyqdieeqsgltdhreheq....saashavkve.....kgsllaellg.seeievnslHhqaike.... 180
                    ++ +++g+Pi+giC Glq +   + G++ +  ++  ++   ++ ++    +++  ++  +     ++++++ l   ++   v s+     ++    
     CCD25532.1  72 KQYIASGKPIMGICVGLQAM---FAGSIESPQSSGLNYISDMKLSRfddsEKPVPEIGWNscmenENGFFYGLDPfKRYYFVHSYAALLNERieth 164
                    678999**************...8888876655533333322322221122222222222333336666666655455666666666666664444 PP

  Peptidase_C26 181 ..laeelrveAvaeDgviEaieseeakafvlgvQwHPE 216
                       +e+++  A a+ g  E+i +  ++  +++ Q+HPE
     CCD25532.1 165 ltKDEGWK-LAKARYGSEEFIAAMWRD-NIFATQFHPE 200
                    43333443.477777777777777755.6777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3887.62
//
Query:       CCD25533.1  [L=370]
Description: hypothetical protein NDAI_0F02150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.2e-107  359.0   0.0   1.4e-107  358.6   0.0    1.0  1  DAHP_synth_1  DAHP synthetase I family


Domain annotation for each model (and alignments):
>> DAHP_synth_1  DAHP synthetase I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.6   0.0    8e-112  1.4e-107       8     274 ..      56     352 ..      39     353 .. 0.97

  Alignments for each domain:
  == domain 1  score: 358.6 bits;  conditional E-value: 8e-112
                   HHHCCCTTTCSEEEEEEESC-S-HHHHHHHHHHHHHHHHHHTTTEEEEEESSSC-S.SSTTS-SHTTHHHTHHHHHHHHHHH.............T- CS
  DAHP_synth_1   8 aadiliGkddrllviaGPCsiedpeaaleyAerlkklgeklkddleiimrayfeKpRrstvgfkGlindpdlkilsrikkel.............gl 91 
                   + +i++G+ddr+lvi+GPCsi+d +aa eyA +lkkl+++l+ dl i+mray+eKp r+tvg+kGlindpd++++++i+k+l             gl
    CCD25533.1  56 SIEIITGRDDRVLVIVGPCSIHDLDAANEYALKLKKLSDELQGDLLIVMRAYLEKP-RTTVGWKGLINDPDVNNTFNINKGLqaarqlfvnltniGL 151
                   389*****************************************************.9*************************************** PP

                   EEEEEESSCCTHHHHHHHESEEEE-CTCTTBHHHHHHHHTTSSEEEEEE-TT....HHHHHHHHHHHHHHHTTE.........EE--EEEEEEEEEE CS
  DAHP_synth_1  92 piatevldpisvqyladvvdiiqiGArttesqdllelasglskpvglKngtd....vaidemkaaaekilflgv.........etkgiilcerglrg 175
                   pi +e+ld+is+q+lad++++++iGArttesq ++elasgls+p+g+Kngtd    va+d+++aa+++++f+gv         +tkg+++c+++lrg
    CCD25533.1 152 PIGSEMLDTISPQFLADLLSFGAIGARTTESQLHRELASGLSFPIGFKNGTDgtlgVAVDACQAASHSHHFMGVtkhgvaaitTTKGNEHCFVILRG 248
                   ************************************************************************************************* PP

                   ST.SSSSSCHCHHHHHHHHHHCTSS-EEEESCHHHTTCGGGGHHHHHHHHHHHHHTT...ESEEEEEBBSSCCC-SST..GGGGBBCTCBHHHHHHH CS
  DAHP_synth_1 176 gk.ktnrdvedvaavkilkeetgklpvmvDvsHansrkdykrqkkvlklakaaiaaG...iaGvmiEshlnpgkalsd..gkqalkygksetdacil 266
                   gk +tn+d+++va++k+++ +  +  +m+D+sH+ns+kd+++q+kv + ++++ia+G   i+GvmiEs++n+g+++++  gk  lkyg+s+tdaci+
    CCD25533.1 249 GKkGTNYDAKSVAEAKAQLPAG-SNGLMIDYSHGNSNKDFRNQPKVNDAVCEQIANGenaIIGVMIESNINEGNQKVPpeGKAGLKYGVSITDACIS 344
                   **********************.68****************************************************999***************** PP

                   HHHHHHHH CS
  DAHP_synth_1 267 keltelll 274
                    e+te +l
    CCD25533.1 345 FETTEVVL 352
                   ***99775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       349  (0.0194657); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2762.87
//
Query:       CCD25534.1  [L=524]
Description: hypothetical protein NDAI_0F02160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.9e-06   26.8   0.2    1.7e-05   25.3   0.2    1.7  1  Arrestin_C  Arrestin (or S-antigen), C-terminal domain
     0.0006   19.9   0.6     0.0013   18.8   0.6    1.6  1  Arrestin_N  Arrestin (or S-antigen), N-terminal domain
  ------ inclusion threshold ------
      0.046   13.5   0.0      0.092   12.6   0.0    1.4  1  HTH_30      PucR C-terminal helix-turn-helix domain


Domain annotation for each model (and alignments):
>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.2   2.8e-09   1.7e-05       2     130 ..     293     462 ..     292     465 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 2.8e-09
                 ---EEEEEEES-SEEETT--EEEEEEEE.E-SSSEEEEEEEEEEEEEEEESS............SEEEEEEEEEE.EEE---................B CS
  Arrestin_C   2 dgkvsleaslpkkgyvpGetipvtvkid.ndskkkvkkikvslvqhvdvcafnr..........snkkeknvvak.sdsvkv................t 72 
                 d+++ +++ l +k + +Ge  ++ ++i  n  k+++kki+v l+q++++  f++           nk   +   k   ++++                +
  CCD25534.1 293 DDSIIYNMALFSKMIEIGEPFELFLSISkNTIKYRLKKITVALIQNLSIPNFDGktkerlegayINKTIFKLAGKtIYNDELnendffqytihnllipK 391
                 88999***********************999*********************77777777666633333333333344444466445555555555555 PP

                 -TTEE.EEEEEEE.----B--.---.....S---EEEEEEEEEEEEEEE........SSEEEEEEEEEEEEE CS
  Arrestin_C  73 saakdkletevelqiPeeltp.ssa.....rnvelikvsYklkvkltls........gsggelslelPivlg 130
                 ++++++l +  +l++  ++ p  ++      +  ++k  + l v+ltl+        g+   l l++Pi+l+
  CCD25534.1 392 KENSASLSIRKKLSLT-NIHPfYCEpcfhdPTFTNLKNTHMLSVRLTLQnvfrsdskGREIWLFLKIPIILV 462
                 5555555555555555.5555522255555588999999999999999999998743244456788888886 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.6   2.1e-07    0.0013      53     123 ..     159     241 ..     115     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.1e-07
                 T............CCCEEEEEEEEEEEEESTSSSSS.SSSSHHHHHHHH-TTEEEEEE---TTS.--SECSGEEEEEEEEEEEE CS
  Arrestin_N  53 a............gktfrkdltlkkkqeyleteksllkskkdsqekLpkGehafpFsfelPknl.psSfeGkaggvrYevkvtl 123
                 +             k  ++++++++k ++ + +  +l + ++    L+kG++ fpF+f++ +++ p   +  +g+  Y ++  l
  CCD25534.1 159 TnekedeivyakiVKELESEKYYSSKFSVKQLKVIVLDK-HERMVLLSKGTYHFPFTFTINPKVfPAGCKTYFGTTCYRLENSL 241
                 044444456666677778888888887777777776666.555566999***********888659999999999999876555 PP

>> HTH_30  PucR C-terminal helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.5e-05     0.092      22      40 ..     317     335 ..     316     347 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.5e-05
                 HTS-HHHHHHHHHHHHHHH CS
      HTH_30  22 LhvHrnTlryRLrrieell 40 
                 L +++nT++yRL++i   l
  CCD25534.1 317 LSISKNTIKYRLKKITVAL 335
                 789************8666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.40
# Mc/sec: 3919.28
//
Query:       CCD25535.1  [L=383]
Description: hypothetical protein NDAI_0F02170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.9e-18   64.5   0.7    5.9e-18   64.5   0.7    2.7  2  Homeobox_KN  Homeobox KN domain
    9.9e-06   25.3   0.4    4.1e-05   23.3   0.3    2.1  2  Homeodomain  Homeodomain


Domain annotation for each model (and alignments):
>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.9      0.14   1.2e+03       4      20 ..     141     157 ..     140     162 .. 0.77
   2 !   64.5   0.7   6.6e-22   5.9e-18       1      40 []     281     320 ..     281     320 .. 1.00

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.14
  Homeobox_KN   4 ahlhnPYPseedKeeLl 20 
                  +++ +P+P+  + e Ll
   CCD25535.1 141 NNMYDPFPKYHKPEILL 157
                  6899****977666555 PP

  == domain 2  score: 64.5 bits;  conditional E-value: 6.6e-22
  Homeobox_KN   1 WflahlhnPYPseedKeeLlkeTglsvkqitnWFINaRrR 40 
                  W+l+hl+nPYP+ ++K+ Ll +Tgl++ q++nWFIN RrR
   CCD25535.1 281 WLLNHLQNPYPTSQEKRDLLIKTGLTKVQLSNWFINVRRR 320
                  ***************************************9 PP

>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.57   5.1e+03      17      43 ..      48      74 ..      47      74 .. 0.77
   2 !   23.3   0.3   4.5e-09   4.1e-05       3      54 ..     266     320 ..     264     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.57
                 HHHHHSSS-SHHHHHHHHHHHTS-HHH CS
  Homeodomain 17 klFeenrypsaeereeLAkklgLeerq 43
                 k F ++  +   +   L++ ++++++q
   CCD25535.1 48 KSFTNSTILPIPQASTLSNPINITGNQ 74
                 567777778888888999999998876 PP

  == domain 2  score: 23.3 bits;  conditional E-value: 4.5e-09
                  -SSSS-HHHHHHHHHHHH...HSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHH CS
  Homeodomain   3 kRttftkeqleeLeklFe...enrypsaeereeLAkklgLeerqVkvWFqNrRak 54 
                  +R ++ ke +++L++      +n+yp+++e+++L  k+gL++ q ++WF N R +
   CCD25535.1 266 RRSNLPKETIRILNSWLLnhlQNPYPTSQEKRDLLIKTGLTKVQLSNWFINVRRR 320
                  5778888888888886553447*****************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1187  (0.0662056); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 3011.31
//
Query:       CCD25536.1  [L=332]
Description: hypothetical protein NDAI_0F02180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2379.33
//
Query:       CCD25537.1  [L=600]
Description: hypothetical protein NDAI_0F02190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.3e-39  134.0   0.5    2.6e-38  132.6   0.1    1.9  2  Metallophos  Calcineurin-like phosphoesterase
    4.9e-14   52.5   0.6    5.3e-13   49.2   0.6    2.4  1  STPPase_N    Serine-threonine protein phosphatase N-terminal 


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.57   5.2e+03     127     172 ..     210     263 ..     156     283 .. 0.44
   2 !  132.6   0.1   2.8e-42   2.6e-38       2     201 ..     344     535 ..     343     538 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.57
                  E.......THHHHHHHHHHHSCHHHHCCHHHHHH.HHHHTTCSEEEEEESSESS CS
  Metallophos 127 l.......lvsldklgslnleleapepgdewlkd.lekrekadwvivlgHsply 172
                  +       +++ ++ ++ +   +++   ++ ++  ++  +k d  i+l   p+ 
   CCD25537.1 210 RnplvrlsTNKYNSNNHHSTSAPTAITTKNNISSiSSSNKKQDKSIILKRYPHD 263
                  034444443333333333333333333333333344455555555555544444 PP

  == domain 2  score: 132.6 bits;  conditional E-value: 2.8e-42
                  EEEEEESBTBTTCCTHHHHHHHHHHHH.HHHTTESEEEEESTSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS........CHHHHHHHHHHHHH CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddl.lreekpdlvllaGDlvdrgdlekellel.laalvkypipvylllGNHe........gfeeellnkygylg 89 
                  +i ++gD+H     gq++dll++l+   l+++ ++l+l  GD+vdrg  + e++ l l++++kyp+++++l+GNHe        gf++e++++     
   CCD25537.1 344 PIKIVGDIH-----GQFNDLLRILKLSgLPSQTNYLFL--GDYVDRGKQSLETILLlLSFKIKYPNNFFMLRGNHEspnitkiyGFYDECKRRKN--- 431
                  6889*****.....**********66664555******..*******6666666666************************************66... PP

                  HHHHHHEHHHCEEETSEEEEEETTEEEEEEEESE.CEEETHHHHHHHHHHHSCHHHHCC...HHHHHHHHHHTTCSEEEEEESSESSCSSSCSCCHHH CS
  Metallophos  90 ifsepwrsdaevfnnlplaslgsgslkvlllhGg.spellvsldklgslnleleapepg...dewlkdlekrekadwvivlgHsplyrgsgylfgdea 183
                    s++w+s+ ++fn lpla+++++  k++++hGg sp+l  +l +++s+++++++p++g   d++++d       +   + ++s + rg + +f+ + 
   CCD25537.1 432 --SKIWKSFMDTFNSLPLAAIIND--KIFCVHGGiSPDL-FQLKQIESIQRPTDIPDKGlitDLLWSD-------PNPTINSWSKNDRGVSFTFSKKN 517
                  ..9*********************..********77777.****************************.......777777888888*********** PP

                  HHHHHHHTTESEEEEESS CS
  Metallophos 184 ledllkkygvdlvisGHt 201
                  + ++ k+++ dl+i+GH 
   CCD25537.1 518 VLEFIKNFNFDLIIRGHM 535
                  *****************7 PP

>> STPPase_N  Serine-threonine protein phosphatase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.6   5.9e-17   5.3e-13       1      48 []     272     342 ..     272     342 .. 0.86

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 5.9e-17
   STPPase_N   1 vDdiIerLlevrg.....................kpggk....kvqLseaEIrqlCakareiFLsQPtLLeLe 48 
                 +D +Ie+Ll+ +                      k  +k    +++++++EI+++C++areiF++QPtLL+L+
  CCD25537.1 272 IDHVIEKLLKLGInnttttstskkksstisssssK--KKidyqNFPFHTWEIQLICNHAREIFMNQPTLLKLQ 342
                 8999*****76666699999*********998652..334466999*************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1733  (0.096659); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4120.00
//
Query:       CCD25538.1  [L=161]
Description: hypothetical protein NDAI_0F02200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 1330.25
//
Query:       CCD25539.1  [L=148]
Description: hypothetical protein NDAI_0F02210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1091.46
//
Query:       CCD25540.1  [L=640]
Description: hypothetical protein NDAI_0F02220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   9.1e-116  388.4  31.5   1.7e-115  387.5  31.5    1.4  1  Sec1          Sec1 family
  ------ inclusion threshold ------
      0.036   13.8   0.0      0.084   12.6   0.0    1.6  1  DUF1353       Protein of unknown function (DUF1353)
      0.043   14.0   1.0       0.15   12.3   1.0    1.9  1  CHDCT2        CHDCT2 (NUC038) domain
       0.26   11.4   2.1        1.2    9.2   0.7    2.5  2  DHR10         Designed helical repeat protein 10 domain
       0.96   10.2   7.7        4.3    8.1   0.2    4.1  3  Occludin_ELL  Occludin homology domain


Domain annotation for each model (and alignments):
>> Sec1  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.5  31.5  4.7e-119  1.7e-115       1     575 []      49     638 ..      49     638 .. 0.85

  Alignments for each domain:
  == domain 1  score: 387.5 bits;  conditional E-value: 4.7e-119
                 EEEEE-HHHHHHHHTT--HHHHHTTTEEETT..T--S-.....BTTSEEEEEE-S-HHHHHHHHHHHHSS-SBS-EEEEESS---HHHHHHHHH..S.G CS
        Sec1   1 KvLvlDkelskilssvlkvsdlleegVtkieklkkrepskrealphlkaiyflrptkenidrlakdfisarrykeyhifftprlseslleglakade.e 98 
                 K+L+lDk++++ +s++ ++s+ll+++++ i++++   +++r+ ++hlk++++++p +e+i++l+ d  ++++y+eyh+ff + +s+s+le+la+ad+ e
  CCD25540.1  49 KALLLDKDTISTISMCATQSELLKNEIFLIDTIE---NKNRDVMRHLKCLVYIKPVEESIQCLI-DELNNPKYGEYHVFFNNLISKSQLERLAEADNlE 143
                 89*********************99***999883...335677*********************.88899**************************99* PP

                 .GGGEEEEE----SEEEETTEEE-S...TTHHHHSTTG.......GG........--HHHHHHHHHHHHHHH-..--EEEE-TT-HHHHHHHH...... CS
        Sec1  99 vvkkvklkelnldfvplesdlfsln...pelplsfrdlyl..dndns.aleeeieslldriakgLlsvllslekkiPiirykgsaasmvakkladelke 191
                 vv kv+  e++ d+  l++dlfs++      ++++++++l   +d s +    + ++l++++++L+svllsl k  P+i + +  +s+++ kla+e++ 
  CCD25540.1 144 VVVKVE--EIFQDYQILNEDLFSFEmtlG--SSFHDNRKLfrGDDLSiW----DPTSLKNCSNSLISVLLSL-KLRPEIKFDS--HSKLCSKLAHEINN 231
                 999999..****************65330..333333333335555533....479****************.89*******9..999*********** PP

                 .....HHHHTTT.--SS--EEEEE-GGG-SSTTTS---BHHHHHHHHS--BTEEEEEE--SS.SEEEEEE--TT...-TTHHHHTTSBHHHHHHHHHHH CS
        Sec1 192 kids.kknfese.ssrqrpvLiIlDRsvDlvtpllhqwTYqaliddllgglnnnnvvleeep.keekeaelvess.sDeffaelrhlnfgevgeklkke 286
                 +i++ +kn +++ + + +p+L+IlDR++D++t ll +wTY ++i++++g +++n v+l+++p ++++  +++++s +D+f+ + ++lnfge+g+k+k +
  CCD25540.1 232 EINKnDKNLFDFpKMDVPPILLILDRKMDPMTALLQPWTYRSMINEYIG-IKRNIVDLSSVPnIDKELLKVTLTSkQDPFYHDSMYLNFGELGDKIKIY 329
                 ***9777766669***********************************8.999999999999*9999999999999*********************** PP

                 HHHHHHHHHTTT....-TTHHHHHHHHHH-GGGHHHHHHHHHHHHHHHHHHHHS-HHH.HHHHHHHHHHHH.SS--.B--..-HHHHHHHH-TTS-H.H CS
        Sec1 287 akeyqeenekkrn.gakesiadlkkfvaklpelqeekkklskHtnlaeellkevkkrkldellelEqdlat.gesdkkikekkvieeliaddeptsele 383
                 +++y++ +  k+n +  e+i+d+k+f++k+pe+++ ++++skH+ +++el +++k +++++++e+Eq+l   +  d+ +++kk+ e+++ + ++++ ++
  CCD25540.1 330 VNDYKKIT--KSNsKI-ETIDDIKQFIEKFPEFKKISGNVSKHMAIISELDRQLKIKDIWDISEIEQNLSVfK--DDDEDYKKLTEKILIN-PDID-FF 421
                 *****988..444244.6***************************************************9864..4456677888888877.5543.69 PP

                 HHHHHHHHHHH.....-B.-HT--GG....GGHHHHGGGGG.........---.BGGG-------.................................. CS
        Sec1 384 dklRLlllyslv..egglkekelkellrelvqsalygleylktlrslek.lgllkkrkgkksskkkss............................... 448
                  k++L+++y+l+  ++g +e +++++ ++l  +    l+ l +++++ k +++++kr++++ ++++ +                               
  CCD25540.1 422 YKVKLCCIYYLRycHDGSNEPRINAIINKLKTQG-ISLDELSIFENFRKqINFVNKRENEMEQSNDINgditnvsnnnskdttmthdllsdilkkfnsk 519
                 *************877765559999977665533.4588899999999999998877777776666669999999999999999999999999999999 PP

                 ...............---------S...TT-.----HHHHHHHHHTTT-S-TTTS-BSS-GGGS--------------------------S-EEEEEEE CS
        Sec1 449 ...........lklikeeedeesnydlsgvs.ryaPllvrlvealikgkklssespslskkdpsqeesssslrsakktnsaskesaekkkkqrviVffv 535
                            +++  ++++ +      +v+ +++P l  l+ +l   ++ls++ +++ +                ++++  +++++++  q+v+Vf+v
  CCD25540.1 520 mesaknmqknrNRNAGNTNNTN----EDNVYlQHIPELSHLLSDLSM-GQLSETRYKTLTT---------------RSGNVARNKKNNQPVQDVVVFVV 598
                 9888887665422222222222....346999**************9.7777777766543...............34444455555556899****** PP

                 EEE-HHHHHHHHHHT...TSSSEEEEEEEEE--HHHHHH. CS
        Sec1 536 GGvTysEiralrllskqekknkeiiigttsilnpksflee 575
                 GG T++E+r ++++++  k++ +ii+g+tsil+ k++l++
  CCD25540.1 599 GGTTFEEARFVHQFNDTMKGKIRIILGGTSILSTKDYLNS 638
                 ***************98888899**************985 PP

>> DUF1353  Protein of unknown function (DUF1353)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.3e-05     0.084       3      56 ..     265     320 ..     263     345 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.3e-05
     DUF1353   3 lledfvyedkegtvvtvpkgfrtDlASiPrllwaliptegrylkAavvHDwly...r 56 
                 ll+++ y++  ++++ +++   +Dl+S+P++   l+++  ++ + +  HD +y   +
  CCD25540.1 265 LLQPWTYRSMINEYIGIKRN-IVDLSSVPNIDKELLKVTLTSKQDPFYHDSMYlnfG 320
                 78999999999999999886.58******************************5441 PP

>> CHDCT2  CHDCT2 (NUC038) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.0   4.1e-05      0.15      22     140 ..     431     561 ..     418     580 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.1e-05
      CHDCT2  22 yaRwq.DiqndprfaiinepFkseaek....gnflei..knkflarrfklleqalvieeqlrraallnlqeekekvgslaqrfaelellaeshqkllke 113
                 y R+  D  n+pr+  i +  k++  +    + f ++  +  f+++r + +eq+  i+ ++  ++  n+++++ +   l++ +++ +   es +++ k+
  CCD25540.1 431 YLRYChDGSNEPRINAIINKLKTQGISldelSIFENFrkQINFVNKRENEMEQSNDINGDITNVSNNNSKDTTMTHDLLSDILKKFNSKMESAKNMQKN 529
                 667654778888876555556655433211233666511457*************************99777777666676666666666666665554 PP

      CHDCT2 114 saa.....gnknanavlekvLnqleelLsdmk 140
                  +      +n n  +v  + + +l++lLsd+ 
  CCD25540.1 530 RNRnagntNNTNEDNVYLQHIPELSHLLSDLS 561
                 33311001334444455566677888888874 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.25     9e+02      36      54 ..     220     238 ..     214     240 .. 0.84
   2 ?    9.2   0.7   0.00035       1.2      50     108 ..     475     534 ..     462     543 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.25
       DHR10  36 rsciklleeieaelaklee 54 
                 + c kl++ei++e++k ++
  CCD25540.1 220 KLCSKLAHEINNEINKNDK 238
                 6799***********9765 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00035
       DHR10  50 akleeakkklkelrdale.ekeielrelerkeerlqrqlenaeeklerlreqaeekreaa 108
                 +k e ++++ ++ +  ++   ++++++ ++++++l   l++ + k+e +++ ++++ ++a
  CCD25540.1 475 NKRENEMEQSNDINGDITnVSNNNSKDTTMTHDLLSDILKKFNSKMESAKNMQKNRNRNA 534
                 566666666666555554146777888888888888888888888888888887777666 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.5   5.3e+03      42      71 ..     130     160 ..     116     163 .. 0.79
   2 ?    8.1   0.2    0.0012       4.3      15      61 ..     350     411 ..     333     415 .. 0.72
   3 ?    3.0   1.1     0.049   1.7e+02      17      80 ..     467     531 ..     459     534 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
  Occludin_ELL  42 erelkelkegsk.eykkieeeilqeykklkk 71 
                   +++l++l+e ++ e+   +eei+q+y+ l++
    CCD25540.1 130 KSQLERLAEADNlEVVVKVEEIFQDYQILNE 160
                   4788888888888888888999999987655 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0012
  Occludin_ELL  15 aeFnkeYkeYkelhaeleevskkfseLe...............relkelkegskeykkieee 61 
                   ++F ++++e+k++  ++++ ++ +seL+               ++l+ +k++++ ykk++e+
    CCD25540.1 350 KQFIEKFPEFKKISGNVSKHMAIISELDrqlkikdiwdiseieQNLSVFKDDDEDYKKLTEK 411
                   6899************************5555555555555544555555555555555555 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.049
  Occludin_ELL  17 FnkeYkeYkelhaeleevskkfseLerelkelkegskeykkieeeilqeykklkk.dpeyqekkk 80 
                   F+k+ +  ++ ++e+e+ ++   ++ +  ++ +++++ ++++ ++il++++++ +  ++ q++++
    CCD25540.1 467 FRKQINFVNKRENEMEQSNDINGDITNVSNNNSKDTTMTHDLLSDILKKFNSKMEsAKNMQKNRN 531
                   555555555566666666666666777777888888899***********999883445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1646  (0.0918066); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 4423.37
//
Query:       CCD25541.1  [L=899]
Description: hypothetical protein NDAI_0F02230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-72  244.9  81.4    2.2e-72  244.9  81.4    3.2  2  TCO89     TORC1 subunit TCO89


Domain annotation for each model (and alignments):
>> TCO89  TORC1 subunit TCO89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.9  81.4   1.2e-76   2.2e-72       1     596 []      45     808 ..      45     808 .. 0.76
   2 ?   -3.6   7.0      0.22   3.9e+03     131     211 ..     817     898 ..     810     899 .] 0.84

  Alignments for each domain:
  == domain 1  score: 244.9 bits;  conditional E-value: 1.2e-76
       TCO89   1 rqFstkSraKssasfkglqkLrrvlshdgalere..slstkhgslkkskssdaLykrralsgLnmtalvgtlsgPvs....................lh 77 
                 rqF t+SraKs asfkg   Lrr+l hdg  ++      ++h ++ k+kssd++ ++r++sgLnmtal+++ s+P s                     h
  CCD25541.1  45 RQFTTRSRAKSTASFKG---LRRMLAHDGGGQGSnlQYDERHAPI-KCKSSDSISRKRVISGLNMTALSRVKSNPNSigaagiisprdkvkqyynqhHH 139
                 9****************...********99888854445677777.7**********************************************999888 PP

       TCO89  78 slsssvgkkGLiprrnrkthsvldLhdsdeavDndSttdeEvEsFtdeeedeAqdd......dksnntqknspkqersfse...devvkdrlsvesdsl 167
                  l +       i  r +++hsvl+L d  e +       eE++   + ++++ +dd      +     +  + k+   + e   +e  +++ + + +  
  CCD25541.1 140 YLNHHSHPRQVIHLRSKSSHSVLNLEDVVEQY---TKNKEEMDRKKNADGKDRNDDkdyddyE-----EDDELKEYDGIGEeeeEEEEEEEGGTQPETM 230
                 8899999999***************9988555...4456778888888888777774343331.....2222233333332000233333334444444 PP

       TCO89 168 rkls...epnsdkPlsrlrnrvdsdskltssravkPm...dhdkidpsksrnkdfdksassdkikaslndetlekedeisdddivhdnvkddvnediid 260
                 ++ls   +  +    s++     s+s+++ +   +     d  +i++    + +    + ++k+  + + e++e+ed i +  +++ ++ + vne++ +
  CCD25541.1 231 NNLSpddKVDHITLSSQEETLSSSNSTHIGNVQTSELngdDRGEIQKPCDIQTALVAHHDKGKVAVVAAPEEVEEEDRIDIPTLDNVETSN-VNEEHAS 328
                 4444442333333345566778899999977766654111556788899999999999999***************999776666666554.3777776 PP

       TCO89 261 avpknsslvkaeahsler....qeedsaslasvtkeknkveiaDennkalsiieeesekkre................eqyvpdmilsqstGverkfen 339
                       +  k+ a   +       +d+++ ++++k+ n   i     ka ++ +++ +   +                e y+p milsqstG+er f++
  CCD25541.1 329 LHSLTRQGSKFTASKSNDtkpsNTDDASATNATNKSANVPSIS----KAINGTQKQRQHATQekqldyhpeheantmaEHYIPTMILSQSTGMERTFQE 423
                 6665555555555444440000445555555555555555555....555554443332222235679999**************************** PP

       TCO89 340 elsrqnslak.....................................lknaeredkkelknarl..nelkfntinqqlnaklksdri....kskadfss 395
                 + s+qnsla                                       + +    +k+++n++l  +     t+  +  a+ ++++       +  fs+
  CCD25541.1 424 PASIQNSLANelkrpgrntnieqqhivplqsqelpdqafaqqpllpnTDRVPTATNKNINNQNLrlKHSDIGTLSTENKADTRTSHSrhnsTNQHAFST 522
                 ********************************************8886777777788888887611344444555555555555544555566788*** PP

       TCO89 396 aissltnnLqrg...npesrla.rsklnktsvkkarqqsler......................................................... 433
                 +i slt+nLq +   +p++ ++  s++++ ++  + ++s                                                            
  CCD25541.1 523 SIPSLTSNLQNAlqqQPQGSYHkTSRIPSNILDATNNNSNTNiryhsalrnenintinnidrkksklkengtsnyhinnnyttnttttnnnnntksdls 621
                 ********996422267766551689999999999999988899****************************************************865 PP

       TCO89 434 lskaseddtsqtelndfssFLksedvd.gdSRTQrKlllQResSilDlnsqn..dsaeavflasnievkreferisheYtnvrRfsnplaesLerisqs 529
                  s   +++ s  + n+f  FLks+d d  dSRTQrKl+lQResSi+Dln+qn  ++++++f+asnievkreferi+heY nv+Rfsnpl+e+L +++  
  CCD25541.1 622 ASLNRKTSSSVLKTNNFQAFLKSDDNDdDDSRTQRKLWLQRESSIMDLNLQNdnNNPDSIFMASNIEVKREFERITHEYINVKRFSNPLNEALAKLE-- 718
                 55556777888899*********9875278*********************9334579**************************************9.. PP

       TCO89 530 ksiektqqkkinnglnassls....................lfsvysdqak..sleells.kaqqaklnrvLakiwksetasfnkDenpl 596
                 +  + t+ +++++++ a + +                    l+s y +  k  + + +l+ +   +kl+r+L++iw++e+ sfn D npl
  CCD25541.1 719 SLEKPTKLTRGSSSSPAATTNnnnpstnnsgtkdrdiqsssLLSSYLNPSKkpTADGFLPgEIRTSKLQRILSSIWREESISFNRDINPL 808
                 22333444444444444444456677778889999999999*****99887335788887355789**********************97 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.22
       TCO89 131 qdddksnntqknspkqersfsedevvkdrlsvesdslrkls...epnsdkPlsrlrnrvdsdskltssravkPmdhdkidpsks 211
                 ++ +++nn+++++++ +  +s+++    + +++ +s r ++    +n ++Pl + +  v+s +  t  rav+   ++ ++++++
  CCD25541.1 817 SNGNNINNMKQSHTNVNGYYSSQNHSGSNNTLRHSSIRSVMgtsATNMNQPLYQHQRVVNSLQPTT--RAVNRRMENVVHHQQQ 898
                 5668999999999999999********************999989999999999999999988777..8888777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (899 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2080  (0.116013); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.34s 00:00:01.19 Elapsed: 00:00:00.49
# Mc/sec: 5529.34
//
Query:       CCD25542.1  [L=1019]
Description: hypothetical protein NDAI_0F02240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-23   80.2  17.7    9.7e-08   32.6   0.4    9.7 10  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.015   15.5   0.9         21    5.6   0.0    5.0  4  Kelch_6   Kelch motif
      0.025   13.9   0.6       0.68    9.2   0.0    3.4  4  CPSF_A    CPSF A subunit region
       0.25   11.7   1.0         38    4.7   0.0    4.0  3  PH_8      Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.39   1.8e+03       3      38 .]       5      37 ..       3      37 .. 0.67
   2 ?   -0.1   0.0      0.44     2e+03      12      29 ..      55      72 ..      42      83 .. 0.76
   3 !   32.6   0.4   2.2e-11   9.7e-08       2      38 .]     180     217 ..     179     217 .. 0.94
   4 !   20.8   0.6   1.1e-07   0.00049       9      38 .]     229     259 ..     221     259 .. 0.88
   5 !    8.3   0.0     0.001       4.6       6      38 .]     275     309 ..     270     309 .. 0.85
   6 ?    2.3   0.0      0.08   3.6e+02      21      36 ..     683     699 ..     662     699 .. 0.64
   7 ?    0.1   0.1      0.41   1.8e+03      15      37 ..     785     802 ..     777     802 .. 0.81
   8 ?   -2.1   0.0       1.9   8.5e+03      14      33 ..     827     846 ..     820     848 .. 0.77
   9 ?    2.1   0.0     0.091   4.1e+02       6      34 ..     887     918 ..     884     920 .. 0.73
  10 !   13.4   0.1   2.6e-05      0.11      10      37 ..     945     972 ..     929     973 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.39
                EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                c+++l+ H ++  sl++  ++++++sG   + + i+d
  CCD25542.1  5 CMKELS-HyGP--SLCVKFYKNYVVSGY-GPFIQIYD 37
                666664.6555..445577999999987.77777776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.44
                SEEEEEEETTSSEEEEEE CS
        WD40 12 svtslafspdgawlasGs 29
                 +++l++s++g++l+ Gs
  CCD25542.1 55 KIHGLSVSSEGKLLVFGS 72
                399**********98665 PP

  == domain 3  score: 32.6 bits;  conditional E-value: 2.2e-11
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++++ l GH +s+ ++ +s++g ++as+sdD+++riWd
  CCD25542.1 180 SKIHNLLGHeGSIFHVTVSDNGELVASCSDDRSIRIWD 217
                 5789999**999*************************9 PP

  == domain 4  score: 20.8 bits;  conditional E-value: 1.1e-07
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 GH   ++ l+f ++g+ l+s s+D t+riWd
  CCD25542.1 229 GHtARIWNLKFFSNGTKLVSVSEDSTCRIWD 259
                 9*666**************99*********9 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.001
                 EEESS..SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH..ssvtslafspdgawlasGsdDgtvriWd 38 
                 + ++H  ++v++++ + + ++ ++++ Dg +++ d
  CCD25542.1 275 VHEAHliKNVWGVDIQEEENLAVTSGNDGRIKLID 309
                 446999999************998888*****965 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.08
                 TSSE.EEEEETTSEEEE CS
        WD40  21 dgaw.lasGsdDgtvri 36 
                 +  + +++Gs+D t+++
  CCD25542.1 683 NDEYiFCTGSEDTTLKL 699
                 33332479*******97 PP

  == domain 7  score: 0.1 bits;  conditional E-value: 0.41
                 EEEEETTSSEEEEE..ETTSEEEEE CS
        WD40  15 slafspdgawlasG..sdDgtvriW 37 
                 +l      ++++s   s D  v+iW
  CCD25542.1 785 GL------DFIVSTvyS-DSGVKIW 802
                 66......888876666.******* PP

  == domain 8  score: -2.1 bits;  conditional E-value: 1.9
                 EEEEEETTSSEEEEEETTSE CS
        WD40  14 tslafspdgawlasGsdDgt 33 
                 tsl   +++ wl+ ++ Dg 
  CCD25542.1 827 TSLEIFRNQVWLFIATTDGQ 846
                 6788899999*987766987 PP

  == domain 9  score: 2.1 bits;  conditional E-value: 0.091
                 EEESS.SSEEEEE.EETTSSE.EEEEETTSEE CS
        WD40   6 tltGH.ssvtsla.fspdgaw.lasGsdDgtv 34 
                 t   H s++  +  f++d+++ + +G+dD+ +
  CCD25542.1 887 TMVVHqSGIKTMNiFQDDNNLkIYTGGDDNAI 918
                 556687778777778888888667***99866 PP

  == domain 10  score: 13.4 bits;  conditional E-value: 2.6e-05
                 SSSE.EEEEEETTSSEEEEEETTSEEEEE CS
        WD40  10 Hssv.tslafspdgawlasGsdDgtvriW 37 
                  s + +++ f++ +++l s s D+ vriW
  CCD25542.1 945 SSTItSCVVFNHGKNLL-STSVDQIVRIW 972
                 33494455577777776.5677******* PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.17   7.8e+02       7      22 ..      60      75 ..      55      82 .. 0.84
   2 ?    1.1   0.0      0.13   5.6e+02      10      41 ..     111     136 ..     106     141 .. 0.77
   3 ?    5.6   0.0    0.0048        21      26      44 ..     356     374 ..     343     378 .. 0.88
   4 ?    0.9   0.1      0.14   6.5e+02      11      40 ..     684     709 ..     681     715 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.17
     Kelch_6  7 lvsvggkiYifGGytd 22
                +vs  gk+ +fG ++ 
  CCD25542.1 60 SVSSEGKLLVFGSRSV 75
                59999*******9976 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.13
     Kelch_6  10 vgg.kiYifGGytdsspylnkvwvydpetksWe 41 
                 ++g +iY++  y       nkv+++d++ ++ +
  CCD25542.1 111 ANGkFIYLLTSY-------NKVLICDLIGNVVS 136
                 555477888888.......99*****9998765 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0048
     Kelch_6  26 ylnkvwvydpetksWeqlp 44 
                 +l k++++d+et +W+ ++
  CCD25542.1 356 SLGKIIKFDFETEVWQLIS 374
                 6789************986 PP

  == domain 4  score: 0.9 bits;  conditional E-value: 0.14
     Kelch_6  11 ggkiYifGGytdsspylnkvwvydpetksW 40 
                 +++i++ G  +     + k+  ++  t++ 
  CCD25542.1 684 DEYIFCTGSEDT----TLKLGQFNTVTGKV 709
                 459999999987....79999999999884 PP

>> CPSF_A  CPSF A subunit region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00015      0.68      92     156 ..      14      78 ..       6     127 .. 0.81
   2 ?   -1.5   0.0      0.27   1.2e+03     116     172 ..     197     253 ..     185     257 .. 0.84
   3 ?   -2.9   0.0       0.7   3.1e+03       5      51 ..     459     495 ..     456     501 .. 0.62
   4 ?   -0.3   0.0      0.11   5.1e+02     152     230 ..     919     998 ..     911    1008 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00015
                 ----EEEETTEEEEE-SSEEEEEEE-TTS-EEEEEEEE-SS-EEEEEEE..TTEEEEEESSS-EEEE CS
      CPSF_A  92 avtalaefqGrllvgvgqkvrvydlgedktLlrkafldtqlyvvslkvl..gnriivgDlmkSvtfv 156
                 +  ++  ++++++ g g  + +yd+ ++++L+ k+ +  + +++ l+v   g+++++g   +Sv++v
  CCD25542.1  14 PSLCVKFYKNYVVSGYGPFIQIYDYHDNGKLIHKSKMFRKNKIHGLSVSseGKLLVFG--SRSVSVV 78 
                 556777789****************************988877766665226688887..4555555 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.27
                 E-TTS-EEEEEEEE-SS-EEEEEEETTEEEEEESSS-EEEEEE-SSS--EEEEEEES CS
      CPSF_A 116 lgedktLlrkafldtqlyvvslkvlgnriivgDlmkSvtfveydeenyklilfardt 172
                 + ++++L++ ++ d ++ + ++k  ++++i       ++ +++ + + kl+ ++ d 
  CCD25542.1 197 VSDNGELVASCSDDRSIRIWDIKLGKELCIGWGHTARIWNLKFFSNGTKLVSVSEDS 253
                 5567789****************9999999888889999999999998899998886 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.7
                 EEE-T..TT-EEEEE--TTEEEEEEEE--B-SSTTT---B--EEEEE CS
      CPSF_A   5 klvdpiskeeidsleLeenEavlsvksvelessettkekkellvVGt 51 
                 ++ ++ + + ++++++++ E+ +s +   +         +++++VG+
  CCD25542.1 459 QINNE-TLTIVEKYSFTKPENFVSSCLEVF---------QHYILVGS 495
                 55554.555667777777777777665555.........45666666 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.11
                 -EEEEEE-S.....SS--EEEEEEESS---EEEEEEE--SSSEEEEEETTSEEEEEE--TTSGGGTTTT.EEEEEEEEE-SS-- CS
      CPSF_A 152 Svtfveyde.....enyklilfardtqkrwvtaaeflvdgedtvlvaDkfgnlfvlrydpeasessdgdprleeraefhlgeiv 230
                 ++++++yd+     e++ ++ f ++  +  +t++ +  +g +++l +  ++ + + +++ ++   ++++ +  ++a+    +iv
  CCD25542.1 919 GIIVFKYDQtkgtiEGN-ITSFEKNAGSSTITSCVVFNHG-KNLLSTSVDQIVRIWTVE-DDILRLSEQ-KYTTCADTGAADIV 998
                 56677777777776677.7777777777777777777444.566666666666666666.555566666.66666666555555 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.51   2.3e+03      60      75 ..     166     181 ..     149     184 .. 0.83
   2 ?    4.7   0.0    0.0085        38      59      79 ..     249     269 ..     235     278 .. 0.82
   3 ?    2.1   0.0     0.051   2.3e+02      36      73 ..     338     375 ..     322     385 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.51
        PH_8  60 iidsGaevWeLkasne 75 
                 +++ G+ +W+L ++++
  CCD25542.1 166 TVMGGVLIWDLSTESK 181
                 6999*******98876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0085
        PH_8  59 iiidsGaevWeLkasnekdfq 79 
                 ++ ds  ++W+L+++n++ f+
  CCD25542.1 249 VSEDSTCRIWDLRSNNNETFE 269
                 556999***********9986 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.051
        PH_8  36 ssalrgkiplslaiisaneekreiiidsGaevWeLkas 73 
                 ++ ++g    +  +i++ +  + i  d  +evW+L++ 
  CCD25542.1 338 EEIIKGFHQFKFGLIAITSLGKIIKFDFETEVWQLISV 375
                 45677778888899999******************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1019 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 6931.52
//
Query:       CCD25543.1  [L=94]
Description: hypothetical protein NDAI_0F02250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-22   78.6   9.4      4e-22   78.1   9.4    1.2  1  Ribosomal_L36  Ribosomal protein L36
  ------ inclusion threshold ------
        0.1   12.1   0.0       0.11   12.0   0.0    1.1  1  DUF3228        Protein of unknown function (DUF3228)
       0.11   13.0   0.2       0.31   11.5   0.1    1.7  2  DUF4193        Domain of unknown function (DUF4193)


Domain annotation for each model (and alignments):
>> Ribosomal_L36  Ribosomal protein L36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   9.4   6.7e-26     4e-22       1      38 []      57      94 .]      57      94 .] 0.99

  Alignments for each domain:
  == domain 1  score: 78.1 bits;  conditional E-value: 6.7e-26
  Ribosomal_L36  1 MKVrssvkkmcegCkvvrRkgrvyviCkknPrhKqRQG 38
                   +KVr+svkk c +C+vvrRkgrvy++Ck+nP+hKqRQG
     CCD25543.1 57 FKVRTSVKKFCAHCYVVRRKGRVYIYCKSNPKHKQRQG 94
                   7************************************9 PP

>> DUF3228  Protein of unknown function (DUF3228)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.9e-05      0.11       9      57 ..      26      73 ..      19      91 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.9e-05
     DUF3228  9 rqfddkkysgtkikvdkeefvekvnellkkeeaelvdGYapFCkhlfve 57
                r++ +++ +++ + ++k+ef++kv  l++++  ++      FC h +v 
  CCD25543.1 26 RNW-STSLTRSPMLLQKDEFTSKVSLLISNRGFKVRTSVKKFCAHCYVV 73
                666.45556677789*******************************985 PP

>> DUF4193  Domain of unknown function (DUF4193)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   5.3e-05      0.31      56      97 ..      30      70 ..      13      71 .. 0.85
   2 ?    4.0   0.4     0.012        70      72      84 ..      67      79 ..      59      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 5.3e-05
     DUF4193 56 eelsvrvipkqadEFtCtscFlvkhrsrlaeeedgqqiCrdC 97
                + l+++ ++ q+dEFt +   l+ +r    +++  +++C+ C
  CCD25543.1 30 TSLTRSPMLLQKDEFTSKVSLLISNRGFKVRTS-VKKFCAHC 70
                5677777889****************9877776.7999*999 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.012
     DUF4193 72 CtscFlvkhrsrl 84
                C++c++v+++ r+
  CCD25543.1 67 CAHCYVVRRKGRV 79
                ********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       569  (0.0317363); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 723.36
//
Query:       CCD25544.1  [L=680]
Description: hypothetical protein NDAI_0F02260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      3e-24   84.6   0.9    2.5e-06   27.2   0.0    4.9  5  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
      2e-13   50.0   0.1       0.12   12.3   0.0    4.5  4  RRM_occluded  Occluded RNA-recognition motif
    5.5e-05   22.8   0.2      0.012   15.3   0.0    2.5  2  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.9e-06     0.017       1      52 [.     224     269 ..     224     273 .. 0.95
   2 !   25.2   0.0   1.7e-09     1e-05      10      62 ..     376     423 ..     373     429 .. 0.92
   3 !   11.6   0.0   3.1e-05      0.18       1      69 [.     501     565 ..     501     566 .. 0.91
   4 ?   -3.2   0.0       1.3     8e+03       1      12 [.     592     603 ..     592     604 .. 0.84
   5 !   27.2   0.0   4.2e-10   2.5e-06       9      58 ..     609     653 ..     607     662 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.9e-06
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedA 52 
                 +++gn+p+d+t +eL ++ +  G i+++k++++     k +af+ F ++ +A
  CCD25544.1 224 VYLGNIPSDLTVKELLDHVRS-GVIEDVKIIPE-----KLCAFISFLDENSA 269
                 79****************986.**********8.....**********9988 PP

  == domain 2  score: 25.2 bits;  conditional E-value: 1.7e-09
                 SSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTE CS
       RRM_1  10 vteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngk 62 
                 +++ +L++ + +fG+i  ik+v d     kg+af+ F+s  +A k++ +ln +
  CCD25544.1 376 ISDAKLRKDLADFGDIDCIKIVED-----KGIAFIHFASITSAIKCVHNLNSM 423
                 6788999999**************.....**********************85 PP

  == domain 3  score: 11.6 bits;  conditional E-value: 3.1e-05
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHH..HHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAek..Alealngkklggrel 69 
                 +++gnLp+d+  ee+  + ++ G  +s+kl  d     + ++fV+F ++ +A++  A+++l+g +++++++
  CCD25544.1 501 IYLGNLPKDIRVEEICNVVRG-GLLQSVKLLGD-----RYVCFVTFIDPTAAAQffAMSSLHGLTIQKKRC 565
                 89***************9987.999********.....**************9866889999999988876 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 1.3
                 EEEESETTTSSH CS
       RRM_1   1 lfVgnLppdvte 12 
                 +++gn+ + +++
  CCD25544.1 592 IYIGNIDFATDK 603
                 89***9998875 PP

  == domain 5  score: 27.2 bits;  conditional E-value: 4.2e-10
                 TSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHH CS
       RRM_1   9 dvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlea 58 
                   te+ L+++Fs +G+++ i+  ++     k+++f++F++ ++A  Al++
  CCD25544.1 609 IFTEDSLRKMFSMYGEMEQINFLPE-----KNCCFINFTNISNAILALDK 653
                 579*********************8.....*****************997 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00018       1.1       5      51 ..     225     269 ..     221     294 .. 0.74
   2 !   12.3   0.0   1.9e-05      0.12      13      68 ..     376     432 ..     373     437 .. 0.89
   3 !   11.4   0.0   3.6e-05      0.22       2      71 ..     499     568 ..     498     571 .. 0.89
   4 !   11.2   0.0   4.3e-05      0.25      15      62 ..     612     655 ..     609     670 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00018
  RRM_occluded   5 sllplsDtvnkariralveek.egeikkivLvpdheGAivefkdekia 51 
                    l +++   ++  +++l+ +  +g i+++ + p++ +A++ f de++a
    CCD25544.1 225 YLGNIP---SDLTVKELLDHVrSGVIEDVKIIPEKLCAFISFLDENSA 269
                   555555...445567777776568*********************998 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.9e-05
  RRM_occluded  13 vnkariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgse..fegkkl 68 
                   +++a++r+ + +  g+i+ i +v d++ A++ f++ ++a k++  L++++  ++ kk+
    CCD25544.1 376 ISDAKLRKDLADF-GDIDCIKIVEDKGIAFIHFASITSAIKCVHNLNSMNdyYSTKKI 432
                   899**********.*********************************98765566666 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 3.6e-05
  RRM_occluded   2 rtisllplsDtvnkariralveekegeikkivLvpdheGAivefkdekiagk..asLaLdgsefegkklrcG 71 
                   rti l +l+  +  ++i ++v      ++ + L  d   ++v f d ++a++  a+ +L+g ++++k+ ++G
    CCD25544.1 499 RTIYLGNLPKDIRVEEICNVVRGG--LLQSVKLLGDRYVCFVTFIDPTAAAQffAMSSLHGLTIQKKRCKVG 568
                   899999***999999999988765..*************************9544558********999988 PP

  == domain 4  score: 11.2 bits;  conditional E-value: 4.3e-05
  RRM_occluded  15 kariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgse 62 
                   ++ +r++++ + ge+++i   p+++++++ f++ + a   +LaLd ++
    CCD25544.1 612 EDSLRKMFSMY-GEMEQINFLPEKNCCFINFTNISNA---ILALDKIK 655
                   678999*****.********************98765...66666655 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0033        20      49      99 ..     386     435 ..     372     452 .. 0.80
   2 !   15.3   0.0   1.9e-06     0.012      39     101 ..     610     670 ..     604     678 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0033
       RRM_5  49 clYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlevalS 99 
                 + +g+++ +k++   k+ a++  ++ +++ ++v+ Ln  + + +  ++   
  CCD25544.1 386 ADFGDIDCIKIVED-KGIAFIHFASITSAIKCVHNLNSMNDYYSTKKIFYG 435
                 568********986.59********************98766665555555 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.9e-06
       RRM_5  39 vnldklFnlfclYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlevalSKq 101
                 ++ d+l  +f++Yg++e++ fl  k +  +++  + s++ +a++ ++ +++f k l++ + K 
  CCD25544.1 610 FTEDSLRKMFSMYGEMEQINFLPEK-NCCFINFTNISNAILALDKIKSNPVF-KDLKINFGKD 670
                 6889999***************986.689**********************9.5677777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       913  (0.0509231); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4643.12
//
Query:       CCD25545.1  [L=487]
Description: hypothetical protein NDAI_0F02270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0003   20.9   0.2    0.00072   19.7   0.2    1.6  1  AMPK1_CBM  Glycogen recognition site of AMP-activated protein


Domain annotation for each model (and alignments):
>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2     4e-08   0.00072      15      81 ..      17      89 ..       2      93 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 4e-08
   AMPK1_CBM 15 yvtGsfnnWk.kkipLkksekdfsv..ilkLpeGthq..ykFiVDge..wrvdpdlptatdeeGnlnNvievke 81
                 ++G+f+nW+ k ++L++++ +f++     +++G  +  +kF +Dge  w vd +  ++ de++n+nNv+  ++
  CCD25545.1 17 NIAGTFTNWEiKPMELHDEHWEFNIpdETLIEKGIEKiyFKF-IDGEsnWLVDGNFAIEVDEHNNQNNVMVLSP 89
                699******735578889999999833466899*99943455.68854599******************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1688  (0.0941491); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.32s 00:00:01.11 Elapsed: 00:00:00.50
# Mc/sec: 2903.09
//
Query:       CCD25546.1  [L=113]
Description: hypothetical protein NDAI_0F02280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-29  102.0   0.3    1.4e-29  101.8   0.3    1.0  1  MF_alpha_N  Mating factor alpha precursor N-terminus


Domain annotation for each model (and alignments):
>> MF_alpha_N  Mating factor alpha precursor N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.3   7.6e-34   1.4e-29       1      87 [.       1      92 [.       1      93 [. 0.95

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 7.6e-34
  MF_alpha_N  1 Mkfssilsavallass.alaapvstedee.eeaaevPaeAvigyldlegdndvallpfsnstssGllfvNtTileqaaa...eedsaslakr 87
                Mk+s++++++all ss +l+++++  d+  +++ ++P+eA+igyldl++d+dv+llpfsn+t+sGllfvN+Til+qa a   ++d+++l+kr
  CCD25546.1  1 MKYSHFFNSLALLLSSiSLISATQLIDDLtNSDGNIPTEAIIGYLDLGADSDVTLLPFSNNTASGLLFVNATILDQALAsseKSDNNGLSKR 92
                9*********99999989******99988899*********************************************998778899999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       276  (0.0153941); expected 358.6 (0.02)
Passed bias filter:                      253  (0.0141112); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 846.26
//
Query:       CCD25547.1  [L=422]
Description: hypothetical protein NDAI_0F02290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-55  187.0   0.1    6.2e-55  186.4   0.1    1.2  1  NAD_kinase  ATP-NAD kinase
  ------ inclusion threshold ------
      0.019   14.6   0.0      0.036   13.7   0.0    1.4  1  DAGK_cat    Diacylglycerol kinase catalytic domain


Domain annotation for each model (and alignments):
>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.4   0.1   6.9e-59   6.2e-55      65     281 ..     129     350 ..      73     354 .. 0.86

  Alignments for each domain:
  == domain 1  score: 186.4 bits;  conditional E-value: 6.9e-59
                 ...EEECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHH.CT-EEEEEESSS--SS-SEEGGGHHHHHHHHHHT-SEEEEEEEEEEEEEETTE......E CS
  NAD_kinase  65 d..dtrkaleafadagvdliivvGGDGTaldvarllqk.aeiPvlgvnaGvkgfltefepeaaaellekllegeirvekrevldavimrskgeediadi 160
                 +    ++ +e++++ ++dl++++GGDGT+l  ++++ + +++Pvl++++G++gfl  f++++ +e+ ek+++ +++   r++l++ +m++      +d 
  CCD25547.1 129 RphVLYTGTEEEITTRADLLVTLGGDGTILHGVSMFGNnQVPPVLAFSLGTLGFLLPFDFKEHKEIFEKVIRSRAKCLHRTRLQCHLMKNGS----KDP 223
                 133677899**********************99999986899***********************************************999....587 PP

                 EEEEEESSEEEEEESSSSS-EEEEEEETTEEEEEEEESEEEEE-TGGGGTHHHHTT--EE-TT---EEEEEESESSS----EEE-TT-EEEEEE-.... CS
  NAD_kinase 161 viensvlnevviirgpgstlielelyvdtelleadqldglivstPtGstayslsaGgplisPgvlailivpicPhslssrpiVvssssklrirva.... 255
                 + ++ ++n++ ++rg+ ++l++l++ +d+e+l+  ++dg+ +stPtGstayslsaGg+++sP v+ il++picP sls+rp++++ ss ++irv     
  CCD25547.1 224 IVTH-AMNDIFLHRGSSPHLANLDIFIDGEYLTRTIADGVTLSTPTGSTAYSLSAGGSIVSPLVPSILLTPICPRSLSFRPLILPHSSHIKIRVGskmn 321
                 8666.6***************************************************************************************987777 PP

                 ...SS--EEEEETTTEEEEE-TT-EEEEE CS
  NAD_kinase 256 ...srseallaldGseelelspgdevrvt 281
                    +++ + l +dG ++ +l+ gde++v+
  CCD25547.1 322 qnhRNNVVNLSIDGIPQQDLQIGDEIHVI 350
                 653333355789***************97 PP

>> DAGK_cat  Diacylglycerol kinase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0     4e-06     0.036      50      92 ..     140     179 ..     101     201 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4e-06
                 HHHHCC-SEEEEEESHHHHHHHHHHHCTHHCTTSEEEEEE-SS CS
    DAGK_cat  50 eakeegvdlivvaGGDGtvsevlnglleelatkpplgiiPlGt 92 
                 e+  +++dl+v +GGDGt+   ++ + +  ++ pp+  + lGt
  CCD25547.1 140 EIT-TRADLLVTLGGDGTILHGVSMFGN--NQVPPVLAFSLGT 179
                 333.37899**********999999888..8888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2990.09
//
Query:       CCD25548.1  [L=617]
Description: hypothetical protein NDAI_0F02300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-69  233.8  20.7    3.4e-69  233.8  20.7    2.1  3  MBOAT     MBOAT, membrane-bound O-acyltransferase family


Domain annotation for each model (and alignments):
>> MBOAT  MBOAT, membrane-bound O-acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.8      0.25   4.4e+03     224     248 ..      50      74 ..      39      80 .. 0.77
   2 ?   -3.3   0.9      0.25   4.5e+03     298     334 ..     132     168 ..     126     180 .. 0.58
   3 !  233.8  20.7   1.9e-73   3.4e-69       5     346 ..     205     565 ..     201     566 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.25
       MBOAT 224 adrniygdwenavsfsefwraWNip 248
                  d ++++   n+ s s+ wr+W   
  CCD25548.1  50 NDKDLNSTNNNTASSSSLWRTWEFK 74 
                 556666666799999*******765 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.25
       MBOAT 298 rvllllveklimrlvalsnlkfdrrrailsnvifwlg 334
                 ++lll++ ++   l++++ ++f  ++++ +  +f l+
  CCD25548.1 132 NFLLLTTLMIAHLLIKKYTMQFLNITKLRFDCFFGLI 168
                 5566666666666666666666665555555555443 PP

  == domain 3  score: 233.8 bits;  conditional E-value: 1.9e-73
       MBOAT   5 syastslltllltlalsvltlqlialvlslydgleketeltedvkellklllisyfvvgflel.................................... 67 
                  ++++++ +l+++ +  ++++ +i ++ls+ d  +k+  +++dv+++++ll++ +++++fle+                                    
  CCD25548.1 205 LTWTYGIAALFINDKYRTYAFGNILSILSPLDNGYKGIIPRWDVFFNFTLLRMISYNMDFLERwtkqlsispasssssmadpqdssepmfrksssrsil 303
                 67899999******************************************************************************************* PP

       MBOAT  68 .....klhslslvfrklasaallsklpslleylgYvffyplllvGPilsyseymsfvesplsrllytakrnfavalyalflgltylilieyvlskicak 161
                        +   l++r + +a ++++++++++y++Y++++pl+++GPi+++++y +++++ l++++    r + +  +++     +l+++e++l+  ++ 
  CCD25548.1 304 epieeSGKYQILNERARLTAPHHLQDYNIFNYIAYITYTPLFIAGPIITFNDYIYQTQHTLPSINRN--RIIIYTARFVL----CLLTMEFILHFAYVV 396
                 ****777777899***************************************************986..55555555554....599************ PP

       MBOAT 162 dftifkmlssaqllmrsvimrilllllllfllifdflglwlvalgedilsGlgvngarldrvadrniygdwenavsfsefwraWNipvhkWLlryvYkp 260
                 +++++k++++++++++s+i +++l++++l+lli+    ++l++l +++l+G++         +++n+++ ++n++s+  fwraW+++++kW++ry+Y+p
  CCD25548.1 397 AVSKTKAWDDDTPFQISMIGLVNLNIIWLKLLIP----WRLFRL-WALLDGID---------TPENMIRLVDNNYSTLAFWRAWHRSYNKWVVRYIYIP 481
                 **********************************....******.*******9.........8************************************ PP

       MBOAT 261 lg.skkfklnkslatlatFlfsAvwHglalgyliwfvlrvllllveklimrlvalsnlkfdrr.railsnvifwlgaflgpslallly 346
                 lg s     n++l++la+F+f+A+wH+++l++l+w++l+vl+ll+e + ++ +a ++ k + r + ++++++++++++++ +++ +++
  CCD25548.1 482 LGgS----HNRILTSLAVFSFVAIWHDIQLKLLLWGWLIVLFLLPEIIATQYFAIYRNKWWFRlSLCALGGVINIWMMMIANIFGFCL 565
                 *855....99*************************************************998835699****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       910  (0.0507558); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4274.15
//
Query:       CCD25549.1  [L=625]
Description: hypothetical protein NDAI_0F02310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-31  108.9   0.1    5.1e-31  107.4   0.1    1.8  1  Sad1_UNC        Sad1 / UNC-like C-terminal
    3.9e-05   23.4   0.2    0.00011   22.0   0.2    1.7  1  KRAP_IP3R_bind  Ki-ras-induced actin-interacting protein-IP3R
  ------ inclusion threshold ------
        1.7    8.8   9.4       0.18   11.9   1.9    2.9  2  FBA_2           F-box associated


Domain annotation for each model (and alignments):
>> Sad1_UNC  Sad1 / UNC-like C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.1   8.6e-35   5.1e-31       2     131 ..     258     389 ..     257     390 .. 0.94

  Alignments for each domain:
  == domain 1  score: 107.4 bits;  conditional E-value: 8.6e-35
                 EEE-B-GGGGGSS-...-STT-SEEEESS-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSTT---........-EEEEEEE--TTS- CS
    Sad1_UNC   2 nkeakapkvilqed...yspgeCwsfkgsrgfvvieLseeiiveavtlehveksvapisSapKdfevsgskrypekk........wvllgefsydedgk 89 
                 n+ea   ++il e+   y +++C s+k +  f++ieL+e+i ve+++++++e+    +sS++K+++vs+s+r p k+        w+ lg+f+ + +++
  CCD25549.1 258 NPEAMGSTSILVENkdsYLLNPC-SVKQK--FIIIELCEDILVEEIDIANFEF----FSSTFKQIRVSVSDRFPVKEnnnkdgggWKILGKFE-AINNR 348
                 56777888888888899******.77766..**********************....****************99999999************.9**** PP

                 SEEEEE--TT----EEEEEEEE--BSS-SSEEEESEEEEEEE CS
    Sad1_UNC  90 naqtFeleeskdilvkyvkleilsnyGneeytclyrlrVyGt 131
                 ++q F++e+++ i+++y+k+eils y ne+y++++++rV+G+
  CCD25549.1 349 ELQRFKIENPQ-IWARYLKIEILSYYDNEFYCPISLVRVHGK 389
                 **********8.*****************************8 PP

>> KRAP_IP3R_bind  Ki-ras-induced actin-interacting protein-IP3R-interacting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2   1.8e-08   0.00011      74     137 ..     349     412 ..     343     418 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.8e-08
  KRAP_IP3R_bind  74 qkqRidiEnpnlasrFrqlevldavanafssLlsdvsklpvqaeekaeeeeaqstsvsatkekr 137
                     ++qR +iEnp++ +r+ ++e+l    n+f++ +s v    +++ ++ ++e++++++ +++k+++
      CCD25549.1 349 ELQRFKIENPQIWARYLKIEILSYYDNEFYCPISLVRVHGKTMMDEFKSEQQEQQQNNNQKDNK 412
                     579****************************999887776665444444444444344444444 PP

>> FBA_2  F-box associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.0       0.2   1.2e+03      15      52 ..     450     482 ..     427     486 .. 0.60
   2 ?   11.9   1.9   3.1e-05      0.18       4      43 ..     533     570 ..     530     579 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.2
       FBA_2  15 ikdsswltLddLLiiNsksleldnsslsskdlNrFLKh 52 
                 i  +++lt dd+L+    +++   + +  + + +FLK+
  CCD25549.1 450 I--KKNLTKDDILLQGKCKVK---TPIAIQSFDKFLKN 482
                 3..255777777777433344...33555777777775 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 3.1e-05
       FBA_2   4 kiliqnfdeltikdsswltLddLLiiNsksleldnsslss 43 
                 ++l+q +d+++  + +++tL+d+L++N k ++ +++ +++
  CCD25549.1 533 RLLSQSLDRIKT-N-HSITLNDILLSNEKYIRANSMIINE 570
                 578999999997.4.569***********99977666644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1448  (0.080763); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.46
# Mc/sec: 4119.64
//
Query:       CCD25550.1  [L=67]
Description: hypothetical protein NDAI_0F02320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-16   57.6   0.0      1e-15   57.6   0.0    1.1  1  COA2      Cytochrome C oxidase assembly factor 2
  ------ inclusion threshold ------
       0.13   11.9   0.0       0.14   11.8   0.0    1.0  1  INSIG     Insulin-induced protein (INSIG)


Domain annotation for each model (and alignments):
>> COA2  Cytochrome C oxidase assembly factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   1.1e-19     1e-15       5      65 ..       1      53 [.       1      67 [] 0.79

  Alignments for each domain:
  == domain 1  score: 57.6 bits;  conditional E-value: 1.1e-19
        COA2  5 lkasqkrklvnllfgttaliatatviipsllPCPamknpyldtdsdPaveelpenskvivi 65
                ++a+ +++++n+l+ tt+li +a+v+++++lPCPa++   ld+d+        e++ ++ +
  CCD25550.1  1 MRAVMRNRVMNNLYLTTFLITFASVAVGTILPCPAHS---LDSDTHQN-----EDKELKNA 53
                59***********************************...99999433.....33444433 PP

>> INSIG  Insulin-induced protein (INSIG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.5e-05      0.14      40      84 ..      17      61 ..       2      66 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 1.5e-05
       INSIG 40 lvfwGlagvalGlllpwlDrlweekfaeeeeeeeeekeeekaase 84
                + ++ +a+va+G++lp+  + ++++++++e++e ++++e +++++
  CCD25550.1 17 TFLITFASVAVGTILPCPAHSLDSDTHQNEDKELKNAKEINNNKD 61
                356789**************9999999999998777776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       596  (0.0332422); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 513.89
//
Query:       CCD25551.1  [L=148]
Description: hypothetical protein NDAI_0F02330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1148.47
//
Query:       CCD25552.1  [L=161]
Description: hypothetical protein NDAI_0F02340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1297.30
//
Query:       CCD25553.1  [L=222]
Description: hypothetical protein NDAI_0F02350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-51  175.3  32.9    1.8e-51  175.1  32.9    1.0  1  RRT14     Regular of rDNA transcription protein 14


Domain annotation for each model (and alignments):
>> RRT14  Regular of rDNA transcription protein 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.1  32.9   9.9e-56   1.8e-51       2     197 .]       6     210 ..       5     210 .. 0.96

  Alignments for each domain:
  == domain 1  score: 175.1 bits;  conditional E-value: 9.9e-56
       RRT14   2 kaskaqAeatvnkllsniLpgsaks..stssnksksksklSsaqllsnqlkkrvelkekdvkklkkkekkkkkkkikkkkeeekklkklakyeiikkkk 98 
                 ++s++qA+++vn+lls++Lp++ k+  ++s+++  +k+++++aql++++lkkr+el++ dv+k+kk+ekk +k+kik +k +++k++klak+ei+kk++
  CCD25553.1   6 NTSQLQATSAVNSLLSSLLPTADKIklKKSNKNGMKKKSTAKAQLIDHNLKKRLELQQLDVRKIKKREKKLQKSKIKFEKLQNEKFEKLAKLEILKKHQ 104
                 79**********************9877777777888889*********************************************************** PP

       RRT14  99 eeeelteeekkyLnklvkkninalkklskiddleikeeleelkkeiLekteeskrlrklskkkkqkkkdFneklkkgsi.........sypGLTPGLAP 188
                  e++lt++ekkyL+ lv+ ++++lk+++ +d+   k+el el++ iL+kt +++ +++ sk++++k+k+F+e++k++s          +y GLTPGLAP
  CCD25553.1 105 LEKTLTDKEKKYLKNLVNLKLKSLKSFEIVDE-DDKNELIELQNFILDKTINNNEYKR-SKNRRNKIKNFKENIKSKSTsntndvsdhRYAGLTPGLAP 201
                 ****************************8876.99**********************9.89***********9999988899***************** PP

       RRT14 189 Vglsdeeee 197
                 Vglsdee++
  CCD25553.1 202 VGLSDEEDS 210
                 *******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2901  (0.161805); expected 358.6 (0.02)
Passed bias filter:                      325  (0.0181271); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1618.18
//
Query:       CCD25554.1  [L=1037]
Description: hypothetical protein NDAI_0F02360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   2.9e-100  336.3  32.0    5.8e-98  328.8  20.1    3.3  3  MMS19_C         RNAPII transcription regulator C-terminal
    2.8e-75  253.3  10.3    1.9e-73  247.3   2.3    4.4  4  MMS19_N         Dos2-interacting transcription regulator of R
     0.0054   17.2   0.4      0.073   13.6   0.1    2.9  3  HEAT_EZ         HEAT-like repeat
     0.0074   16.5   0.0         12    6.5   0.0    4.4  4  HEAT            HEAT repeat
  ------ inclusion threshold ------
       0.31   11.6   9.8          7    7.3   0.2    5.0  5  Ipi1_N          Rix1 complex component involved in 60S riboso
        1.8    9.1   4.7        6.3    7.3   0.5    2.8  2  Arm-DNA-bind_5  Arm DNA-binding domain


Domain annotation for each model (and alignments):
>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1   0.00038       1.1     339     370 ..      55      86 ..      45      93 .. 0.82
   2 !    6.3   1.0    0.0015       4.4     102     223 ..     332     442 ..     262     468 .. 0.75
   3 !  328.8  20.1    2e-101   5.8e-98       2     423 .]     561     964 ..     560     964 .. 0.95

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00038
     MMS19_C 339 egfkssdsetkenyLvALshllkhvPkslllp 370
                 +++ s+++++++n L  Ls++l+++P++lll 
  CCD25554.1  55 DEMTSDEDSKRQNSLHCLSSILSNIPHDLLLR 86 
                 4455589999******************9984 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0015
     MMS19_C 102 saastsssiltddrllevlgriinlivrslssskqqevleevvalfltgdaskkfeplsesasesqkqliilftailaalrkevklpdlsellnellel 200
                   ++   + ++ +++ +++ +i+++i  +l++ +++++l+ ++++f + + ++           + ++ +  +++ila++     + + +++++++l  
  CCD25554.1 332 TIST---TTNSIQTNYQIALNIMKIIANELEKYNHEQFLKFFNHIFEELKPNF-----------TYEKDLKQSCSILASIGSANLI-TFNTVITNTLP- 414
                 3333...46677788999*******************************9999...........2222234578899999888555.88888888888. PP

     MMS19_C 201 laseaespflrlaylr.....llallvN 223
                 l  +++s++ +l +l      +l + vN
  CCD25554.1 415 LFLQNTSEIPKLKLLLmnlsfFLDSYVN 442
                 5555555555544443335555555555 PP

  == domain 3  score: 328.8 bits;  conditional E-value: 2e-101
     MMS19_C   2 allatLpdsaseasasa......yervLeaLaelss.ekqlfetlvirllnkldlvlksnessaayahailstllkllekkqtdlekeellnsyydriv 93 
                 ++l+ Lp++ase  +++      +er+L+++ ++++ ++ l+++++i l+ kl++v k  +s ++y++++lstl++l+e+++  l++e+++  +++ + 
  CCD25554.1 561 KMLDLLPNDASEFIHWNndeivpIERILKIILDFTTsRHILVQESIIYLCGKLSIVAKIGSS-NDYCFLLLSTLYSLFENNV-SLINENDAINIKNAVE 657
                 7999************9*******************9************************9.*****************98.999************* PP

     MMS19_C  94 prlltlvvsaastsssiltddrllevlgriinlivrslssskqqevleevvalfltgdaskkfeplsesasesqkqliilftailaalrkevklpdlse 192
                   l++ +++  +    i++dd++l++l++++ +i  +++ +++q+ l++++++f+++ +            e+ ++l + +++il++l+k+v++++++e
  CCD25554.1 658 NDLFNIMINDRP----IAEDDHNLSLLSNVLFFISLKIPLKTHQDQLNRYNKIFIDDYKIL----------EKPSRLALPYSKILSGLDKNVQISNVDE 742
                 ************....***************************************775444..........45567789******************** PP

     MMS19_C 193 llnelle..llaseaespflrlaylrllallvNKflkdedlselldellesieeslieaedsqerkaaleiliwitKALvlRghplatelldkLlelLs 289
                 ++++++   +  ++ ++ f+ ++yl+ll++l NK+l+++++ e+               + ++++  +leil+w+ K+Lv+++++++++ l++++ lLs
  CCD25554.1 743 IFQAIVAllTDETKMKTTFENIGYLELLMILSNKWLSEDKVIEF--------------FKFDNLSITNLEILTWLGKGLVMKNSKYSKKTLENFIALLS 827
                 **9999966566777899*******************9666666..............568999999******************************** PP

     MMS19_C 290 edaelgqlvakafgvlvsddev.....vlskknhanirlLykQrfFstvlpklvegfks.sdsetkenyLvALshllkhvPkslllpeLptLlPlLlqa 382
                  ++++g +v+k+f+++v+d  +     +++ + ++n++lLykQ+fFs++++ lv+++ks +++++k+nyL+ALs++lkh+P++l+ p++++LlPlLlqa
  CCD25554.1 828 -NEDVGVFVSKLFEIFVID--InslqkFKNITYNNNVKLLYKQKFFSDIFQTLVNSYKStQEMTIKCNYLTALSLILKHTPSNLVEPFIEDLLPLLLQA 923
                 .******************..6667999*********************************************************************** PP

     MMS19_C 383 LdlpdaevkastLetlksileespslvsehlssLvprLLkl 423
                 L++p+aev+ s+L tlk+  e+ ++l+++h++ Lvp+LLkl
  CCD25554.1 924 LEMPNAEVRISSLGTLKDSTEKFHQLITDHVDILVPMLLKL 964
                 ***************************************97 PP

>> MMS19_N  Dos2-interacting transcription regulator of RNA-Pol-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.3   2.3   6.2e-77   1.9e-73       3     261 .]      52     312 ..      50     312 .. 0.97
   2 ?    0.6   0.0      0.12   3.6e+02     222     257 ..     344     379 ..     328     382 .. 0.84
   3 ?    2.8   0.0     0.025        74      23      70 ..     501     549 ..     478     605 .. 0.72
   4 ?    4.1   0.1      0.01        30     205     243 ..     912     949 ..     865     966 .. 0.87

  Alignments for each domain:
  == domain 1  score: 247.3 bits;  conditional E-value: 6.2e-77
     MMS19_N   3 aLgeyLtseddkvRakavslLaevlsrlpkkklseeevevLvqFflsrledfavlkealkgllaLlrlkkfsaeeavevlralfeevhvqslaqadRkl 101
                 aL++ +ts++d+ R++++++L+++ls++p++ l ++e++v+++F+ s+++d  ++k +l+++++L+ +k++s +e++++l++l e+++++++++a+R+ 
  CCD25554.1  52 ALKDEMTSDEDSKRQNSLHCLSSILSNIPHDLLLRNEISVIFNFYKSKFDDDILMKFTLDAFNSLIAMKYISINEITTLLTTLKESYDPSKFLAATRFI 150
                 78999************************99******************************************************************** PP

     MMS19_N 102 vyelldall.ekhrealkelgedflegfvelvdgEkDPrnLllvfellkvllref.dlsalaeelFdvvscYFPitFrpppndpygitredLkaaLrec 198
                  +e+l++++ + + ++  +l++ f+e+f+++++gEkDP+nLl++f+l+k +++++ ++++++++lFd++++YFPitF+pp+ndpy+i++ dLk aLr++
  CCD25554.1 151 PFEILQTIYiKDFITKHPNLNDLFIETFIHIATGEKDPKNLLISFKLNKLITTNLkNVTNFKNKLFDILFAYFPITFKPPKNDPYKISNSDLKLALRSA 249
                 *********6777788878999******************************9994455**************************************** PP

     MMS19_N 199 laasplfaplalplllekLdstsvsakldaLqtlaacveaygaeavaehlralwsalkkeiln 261
                 l++s+ fa +++++l++k++++s+ +k+d+L t++ c+e+yg + +   + ++w++lk+e+++
  CCD25554.1 250 LSSSSIFASDVFDNLIDKMSASSPIVKNDTLLTMKSCIENYGGQYIIDSWLPIWTSLKFELIH 312
                 ************************************************************986 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.12
     MMS19_N 222 vsakldaLqtlaacveaygaeavaehlralwsalkk 257
                  ++ l +++++a+ +e+y++e+  +++++++++lk 
  CCD25554.1 344 YQIALNIMKIIANELEKYNHEQFLKFFNHIFEELKP 379
                 556778899999999999999999999999999986 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.025
     MMS19_N  23 LaevlsrlpkkklseeevevLvqFflsrle...dfavlkealkgllaLlrl 70 
                 ++++++ +    l+e e++++vq++++ +    ++++  ++l+gl+ ++++
  CCD25554.1 501 FTKMIKMVG--YLTEDEISLIVQYITETILtdsNKNIYYACLEGLKVISEF 549
                 344444333..79**************9866566788999****9999865 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.01
     MMS19_N 205 faplalplllekLdstsvsakldaLqtlaacveaygaea 243
                 f +++lplll+ L+  + +++  +L tl+  +e+++ + 
  CCD25554.1 912 FIEDLLPLLLQALEMPNAEVRISSLGTLKDSTEKFH-QL 949
                 88999*****************************95.44 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.9   8.6e+03      38      55 .]      58      75 ..      57      75 .. 0.83
   2 ?   -0.8   0.0      0.79   2.3e+03      22      42 ..     736     756 ..     726     758 .. 0.80
   3 !   13.6   0.1   2.4e-05     0.073      19      52 ..     906     939 ..     894     940 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.9
     HEAT_EZ 38 nddsdeVRaaAagaLgnl 55
                ++d+d+ R++++++L+ +
  CCD25554.1 58 TSDEDSKRQNSLHCLSSI 75
                6788888********986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.79
     HEAT_EZ  22 lqplvpeilpaLlalLnddsd 42 
                 +  +v+ei  a +alL+d+ +
  CCD25554.1 736 QISNVDEIFQAIVALLTDETK 756
                 5568999*********99865 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 2.4e-05
     HEAT_EZ  19 pellqplvpeilpaLlalLnddsdeVRaaAagaL 52 
                 ++l++p+++++lp+Ll++L+ +++eVR  ++g+L
  CCD25554.1 906 SNLVEPFIEDLLPLLLQALEMPNAEVRISSLGTL 939
                 56899***************************98 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.028        85       7      30 ..      56      78 ..      46      79 .. 0.79
   2 ?   -0.8   0.0      0.91   2.7e+03       9      30 ..     528     549 ..     519     550 .. 0.79
   3 !    6.5   0.0    0.0039        12       1      25 [.     916     940 ..     916     945 .. 0.92
   4 ?   -1.8   0.0       1.9   5.6e+03       5      22 ..    1007    1023 ..    1005    1024 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.028
                HHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT  7 kllsDpspeVReaAakaLgalaev 30
                ++ sD++++ R++++ +L  ++++
  CCD25554.1 56 EMTSDEDSK-RQNSLHCLSSILSN 78
                455667777.**********9986 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.91
                 HT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   9 lsDpspeVReaAakaLgalaev 30 
                 l+D++ ++ +a+++ L  ++e+
  CCD25554.1 528 LTDSNKNIYYACLEGLKVISEF 549
                 6999999999*******99986 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0039
                 HHHHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLg 25 
                 llPlll++l+ p++eVR +++ +L 
  CCD25554.1 916 LLPLLLQALEMPNAEVRISSLGTLK 940
                 89*****************999886 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 1.9
                  HHHHHT-SSHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAak 22  
                  ll  lsD+   VR+ ++ 
  CCD25554.1 1007 LLP-LSDKKRIVRKQCID 1023
                  555.7999999***9986 PP

>> Ipi1_N  Rix1 complex component involved in 60S ribosome maturation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.035   1.1e+02      21      46 ..      35      59 ..      34      94 .. 0.68
   2 ?    7.3   0.2    0.0024         7      22      89 ..     272     341 ..     265     356 .. 0.66
   3 ?    2.7   0.0     0.063   1.9e+02      46      63 ..     810     829 ..     789     852 .. 0.73
   4 ?   -0.8   0.0      0.76   2.3e+03      30      48 ..     894     911 ..     886     954 .. 0.58
   5 ?   -1.8   0.0       1.6   4.8e+03      24      43 ..     974     993 ..     972    1016 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.035
      Ipi1_N 21 ispdIredslkfLdllLevapeelvs 46
                +++ I++ s+k+Ld++L    e   s
  CCD25554.1 35 LASYIQNKSIKLLDIILALKDEM-TS 59
                5678************9644433.33 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0024
      Ipi1_N  22 spdIredslkfLdllLevapeelvssawvktLnnf.lallgwskeksskgstsak...atsssssskktskk 89 
                 sp +++d+l +++ ++e ++ + + ++w+ + +++ ++l+  s+  +s++st+ +   ++s++ s ++ s +
  CCD25554.1 272 SPIVKNDTLLTMKSCIENYGGQYIIDSWLPIWTSLkFELIHNSE--GSTESTMLNpitNESTTISTTTNSIQ 341
                 7889*************************888887578887743..33333333344433333333332333 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.063
      Ipi1_N  46 ssa.wv.ktLnnflallgws 63 
                 +++ +  ktL+nf+all+ +
  CCD25554.1 810 KNSkYSkKTLENFIALLSNE 829
                 2224446**********985 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.76
      Ipi1_N  30 lkfLdllLevapeelvssa 48 
                 l  L+l+L+++p++lv+ +
  CCD25554.1 894 LTALSLILKHTPSNLVE-P 911
                 56677777777777443.2 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 1.6
      Ipi1_N  24 dIredslkfLdllLevapee 43 
                 ++r  sl++L+ll  v+p +
  CCD25554.1 974 NVRLLSLQLLELLTTVVPLN 993
                 68999********9999977 PP

>> Arm-DNA-bind_5  Arm DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.5    0.0021       6.3      49      81 ..      27      59 ..      13      66 .. 0.79
   2 ?    2.2   0.3     0.082   2.5e+02      15      70 ..     305     363 ..     304     368 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0021
  Arm-DNA-bind_5 49 erepntlelnskirqerekledivrklrqkekt 81
                    + ++  l+l+s+i+++  kl di+++l+++ ++
      CCD25554.1 27 KADQISLQLASYIQNKSIKLLDIILALKDEMTS 59
                    334449**********************99874 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.082
  Arm-DNA-bind_5  15 plylriykngkrkreslglyitpepwdkk...kgkvkerepntlelnskirqerekled 70 
                     +l  + ++n +   es+ l  ++++ ++    ++ ++ +++ +l++ + i +e ek++ 
      CCD25554.1 305 SLKFELIHNSEGSTESTMLNPITNESTTIsttTNSIQTNYQIALNIMKIIANELEKYNH 363
                     56677777777677777777777766666555666667677788899999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1037 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 6634.18
//
Query:       CCD25555.1  [L=940]
Description: hypothetical protein NDAI_0F02370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-33  112.4   0.2    3.2e-32  110.6   0.2    2.0  1  Forkhead        Forkhead domain
      4e-09   36.7   0.1      2e-08   34.5   0.1    2.3  1  FHA             FHA domain
     0.0033   17.8   0.1      0.011   16.1   0.1    1.9  1  Linker_histone  linker histone H1 and H5 family
  ------ inclusion threshold ------
      0.017   15.4   3.2      0.044   14.0   0.0    2.8  2  FHA_2           FHA domain


Domain annotation for each model (and alignments):
>> Forkhead  Forkhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.2   7.1e-36   3.2e-32       2      85 ..     356     439 ..     355     441 .. 0.93

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 7.1e-36
                 -----HHHHHHHHHHT-TTT-B-HHHHHHHHHCC-HHHHCC.-CCHHHHHHHHHHHHC--EEETT.-T.TSS--EEE--TTHHHH CS
    Forkhead   2 kPpysYaaLIaqAiksspekkltLseIyefieenfpyyrtaakkgWqnSirhnLslnkcFekvpreee.egkgslwtidpeseek 85 
                 kPp+sYa++I+qAi+s++e+ ++L++Iy+fi++n++yyr  ak gWqnSirhnLslnk+Fekvpr+ + +gkg+ w+i++e + +
  CCD25555.1 356 KPPHSYATMITQAILSTQEGIISLADIYKFISSNYAYYRF-AKPGWQNSIRHNLSLNKAFEKVPRRPNePGKGMKWRINNEFQMD 439
                 9***************************************.5**********************855537*********998766 PP

>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.1   4.4e-12     2e-08       1      69 []      69     149 ..      69     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 4.4e-12
                 EEEESS........TTSSEETT.....STTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA   1 vtiGRs........sdcdivld.....dpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 v+iGR+        +++ + ++      + +Sr+Ha i+++ ++g + l+ +g +nG  +N ++i +g ++ + sg +ie+G
  CCD25555.1  69 VSIGRNteptnpsnNTNELKINidlgpAKIVSRNHAAISYNIQEGAWQLKIIG-RNGAKINYEKIANGSTALIDSGAIIEIG 149
                 579999998887773333333354766688*********************98.**************************98 PP

>> Linker_histone  linker histone H1 and H5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.5e-06     0.011       3      37 ..     360     393 ..     358     417 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.5e-06
  Linker_histone   3 sykdMikeAIkalkerkGsSrqaIkkyikakykvv 37 
                     sy+ Mi++AI + +e   +S++ I k+i+++y + 
      CCD25555.1 360 SYATMITQAILSTQE-GIISLADIYKFISSNYAYY 393
                     8***********887.679*************875 PP

>> FHA_2  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   9.9e-06     0.044      36      90 ..      99     153 ..      95     158 .. 0.91
   2 ?   -3.1   4.0       2.1   9.4e+03      65      93 ..     211     239 ..     201     242 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 9.9e-06
       FHA_2  36 cSrnqvelkadlekklvkvkqlGanpssvngkklkknesvelkegqtlelleeky 90 
                 +Srn+  +  ++++ + ++k +G+n +++n  k+ ++++  + +g  +e+   + 
  CCD25555.1  99 VSRNHAAISYNIQEGAWQLKIIGRNGAKINYEKIANGSTALIDSGAIIEIGGTQM 153
                 7**********************************************99966655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.1
       FHA_2  65 ngkklkknesvelkegqtlelleekypyt 93 
                 ++++ ++++++ l++ q+ +ll +++ ++
  CCD25555.1 211 QQQQQQQQQQLLLQQQQQQQLLLQQHHHQ 239
                 45667788889999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (940 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4233  (0.236098); expected 358.6 (0.02)
Passed bias filter:                      586  (0.0326845); expected 358.6 (0.02)
Passed Vit filter:                       167  (0.00931452); expected 17.9 (0.001)
Passed Fwd filter:                        63  (0.00351386); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.65u 0.39s 00:00:02.04 Elapsed: 00:00:00.60
# Mc/sec: 4737.80
//
Query:       CCD25556.1  [L=200]
Description: hypothetical protein NDAI_0F02380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.4e-11   43.5   0.1    4.2e-09   36.7   0.1    2.5  1  Ribosomal_L13  Ribosomal protein L13


Domain annotation for each model (and alignments):
>> Ribosomal_L13  Ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.1   2.3e-13   4.2e-09       4     123 ..       9     117 ..       7     119 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 2.3e-13
                    EEEETTSBHHHHHHHHHHHHHTTTSTT--TTS--S-EEEEEEGGCBB-SSTHHTT-EEEEE-SSTTSEEEEEHHHHHCCSHHHHHHHHHHCCS-SS CS
  Ribosomal_L13   4 viDAegqvlgrlaskiakvLrGkhkptytphvdcGdyvvvinaekvaltgkkleqkvyyrhtgypgglkevtakellekkpeeilekaVkgmLpkn 99 
                    viD +g+ +grlas +ak L              G  +v++ ae ++++g+  ++k  y+   +     + t   ++ + p++i+ kaV+gm+ ++
     CCD25556.1   9 VIDGKGHLVGRLASIVAKQLL------------EGQKIVIVRAEALNISGEFFRNKLKYHDYLRKATRFNKTRGPFHFRAPSRIFYKAVRGMISHK 92 
                    788888888888888887664............57789***************9999999988888888888899*******************87 PP

                    H.HHHHHGCTEEEESSSTTSGGGGS CS
  Ribosomal_L13 100 k.lgrrrlkrLkvyageehpheaqk 123
                    +  g++ l+rLkv++g   p++++k
     CCD25556.1  93 TaRGKAALERLKVFEGVPPPYDKKK 117
                    72567777********999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1455.39
//
Query:       CCD25557.1  [L=60]
Description: hypothetical protein NDAI_0F02390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-18   65.9   0.1    2.4e-18   65.5   0.1    1.2  1  Tom7      TOM7 family


Domain annotation for each model (and alignments):
>> Tom7  TOM7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.1   1.3e-22   2.4e-18       1      41 []      14      54 ..      14      54 .. 0.99

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 1.3e-22
        Tom7  1 KeriskvidvsktaiHyGfiPlvlyLGfsksePkpslisLL 41
                Keri+kv+++++  +HyG+iP+vlyLG+ ++++kp+l++LL
  CCD25557.1 14 KERITKVLNLTHNLAHYGWIPFVLYLGWANTPNKPNLFNLL 54
                9***************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       310  (0.0172904); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 447.32
//
Query:       CCD25558.1  [L=498]
Description: hypothetical protein NDAI_0F02400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-75  254.1   0.7    1.6e-75  253.6   0.7    1.2  1  2-oxoacid_dh   2-oxoacid dehydrogenases acyltransferase (cata
    3.3e-16   58.9   0.1    7.8e-16   57.7   0.1    1.6  1  Biotin_lipoyl  Biotin-requiring enzyme
    7.4e-14   51.8   0.1    2.1e-13   50.4   0.1    1.9  1  E3_binding     e3 binding domain
  ------ inclusion threshold ------
       0.36   11.0   4.4        1.3    9.2   4.4    1.9  1  CPSF100_C      Cleavage and polyadenylation factor 2 C-termin


Domain annotation for each model (and alignments):
>> 2-oxoacid_dh  2-oxoacid dehydrogenases acyltransferase (catalytic domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.6   0.7   3.5e-79   1.6e-75       3     233 .]     265     498 .]     263     498 .] 0.94

  Alignments for each domain:
  == domain 1  score: 253.6 bits;  conditional E-value: 3.5e-79
                   XXXXXXXXXXXXXXXXXXXXXX.XXXEEEEEEEEE-HHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHH-GGGG-EE.EES.EEEE--SS-- CS
  2-oxoacid_dh   3 eeervplsgirkaiakrlteskqeiphftlsdevdvtallelrkelkekeakeekakltlldflikavalAlkefPelnasvdeee.keivvkkhvn 98 
                   ++e++++s++rk+i +rl +s q+ip + +s ++ v++ll+lrk+l++ +++++  kl+++d+lika++ A k++P+ na++  +  + i++ k+v+
    CCD25558.1 265 SYEDMEISNMRKIIGDRLLQSTQSIPSYIISSKISVSKLLKLRKSLNSTANDKY--KLSINDILIKAITVAAKRVPDANAYWMPDGkNIIRRFKNVD 359
                   57899*******************************************998554..9*************************65552367789**** PP

                   EEEE--------EEEE--GGG--HHHHHHHHHHHHHHHTTT---GGGTSS-SEEEE------.---------TT-SEEEEE---.B--TT.STT-.. CS
  2-oxoacid_dh  99 iGvAvatprGLlvPviknadkkslleiakelkelaekaregklkpedleggtftisNlGmlG.vtsftPiinppqvaIlgvgrikerpvv.kege.. 191
                   ++vAvatp+GLl+P++knad+k+l++i+ke+kel+++a+ +kl+p++++ggt++isN+Gm + +++ft iinppq+ Il++g+++++pv  + +e  
    CCD25558.1 360 VSVAVATPTGLLTPIVKNADSKGLSTISKEVKELVKRAKINKLNPDEFQGGTICISNMGMNDaISMFTSIINPPQSTILAIGTVERVPVEdVTTEng 456
                   *************************************************************99*************************876444455 PP

                   HT---EEEEEEEEETTT--HHHHHHHHHHHHHTT-HHXXXXX CS
  2-oxoacid_dh 192 lvvrkvmtlslsaDHRvidGaeaarFlntlkkllenpeelll 233
                   ++   +m+++ ++DHR idGa+aa+F+++lk+++enp elll
    CCD25558.1 457 FSFDDTMNITGTFDHRTIDGAKAAEFMKELKTVIENPLELLL 498
                   **************************************9985 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.1   1.7e-19   7.8e-16       3      72 ..      50     121 ..      49     122 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.7 bits;  conditional E-value: 1.7e-19
                    EEESSSEEEEEE..ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEE.E-TTCEEEE CS
  Biotin_lipoyl   3 iksPmiGesveeg.vvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdt.vevgdllak 72 
                    i +P++++++++g  + +++k+Gd+ + g+v+aeve++K++m++e +++G +++ilv+eG++ + v++++a+
     CCD25558.1  50 IGMPALSPTMAQGnLAVWTKKEGDSLSPGEVIAEVETDKAQMDFEFQDEGFLAKILVPEGTKdIPVNKPIAV 121
                    78*******************************************************************985 PP

>> E3_binding  e3 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.1   4.7e-17   2.1e-13       1      35 [.     199     233 ..     199     234 .. 0.97

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 4.7e-17
                 SBE-HHHHHHHHHCT--TTTS---CTTTBE-HHHH CS
  E3_binding   1 vlAsPaaRklAkelGidLsdvkGtGpgGRItkeDV 35 
                 ++AsP+a+ +A e+Gi L++ kG+Gp+GRI+k+DV
  CCD25558.1 199 IIASPLAKTIALENGIALKNMKGSGPHGRIVKADV 233
                 68********************************9 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.4   0.00029       1.3      16      96 ..     132     206 ..     127     220 .. 0.49

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00029
   CPSF100_C  16 veglevatvtgeleieeeaeeaeeeekeeeeeeeeeeeeeeeaskkqklaeksekeaseeeseekkeslptldvlpankas 96 
                 ++++++  vtg+    +++  +++++++e+  +e++++ e+++++k    +++ k+++++++++k+++++t  ++++ +a+
  CCD25558.1 132 FKDFKLDEVTGSTSNGSND--NTAKQQKED-GNEASKKLEDKSEEK---PKSKPKSKKTTATTDKDATVNTSRIIASPLAK 206
                 6778888888888733322..111111111.111111111122222...23344555556666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1490  (0.0831056); expected 358.6 (0.02)
Passed bias filter:                      691  (0.0385409); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3543.58
//
Query:       CCD25559.1  [L=299]
Description: hypothetical protein NDAI_0F02410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-66  222.0   0.0    7.7e-66  221.7   0.0    1.1  1  RNase_HII  Ribonuclease HII


Domain annotation for each model (and alignments):
>> RNase_HII  Ribonuclease HII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.7   0.0   4.3e-70   7.7e-66       1     198 []      48     272 ..      48     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 221.7 bits;  conditional E-value: 4.3e-70
                 EEEEEE-TT-SBS-EEEEEEEECGHHHH..HHHCTTGTTGTTS-HHHHHHHHHHHH.....................SEEEEEEE-HHHHH.HHTTTS- CS
   RNase_HII   1 iGiDEaGrGpvlGplvvaavavekeree..elkklgvkDSKkLskqkreeLaklik.....................kkiekrklvaeeikyasenein 76 
                 +G+DEaGrGpvlGp+v+ + ++++e+++  ++ +++++DSKkL+++ r++L+++++                     ++i+  +++++++ky +e+ +n
  CCD25559.1  48 MGVDEAGRGPVLGPMVYGVSYCTEEYQNetIIPNYEFDDSKKLTDPIRRKLFSKMYrhnshdlqkdeieldsigyatTSITPLDISSGMLKYPPEKVYN 146
                 7************************9997789******************************************************************* PP

                 HHHHHHHHHHHHHHHHHHTCEECCECCCE--SSHHHHHHHHHHHHC.CEEEEETTGGGT-HHHHHHHHHHHHHHHHHHHHHHHHCSH.--TTSSTTSHH CS
   RNase_HII  77 lneikaaltlaviklleklgvkvdeilvdgvttpeslkkkleqiik.ikvtvekkadekyllvaaASiiAkverdeelellkrkpgtldkgsGyasdek 174
                 lne+++++t+a+i+ + +lgv++++++vd+v++ + ++kkl+++++ +++tv+kkad+++++v++AS++Akv+rd+ +e+lkr   ++ +gsGy+sd+k
  CCD25559.1 147 LNEQAHDVTMALIQGVLNLGVNLSHVYVDTVGPSQTYQKKLQDRFPsVEFTVTKKADSLFCVVSVASVVAKVTRDILVESLKRPEVDEIIGSGYPSDAK 245
                 **********************************************************************************9866************* PP

                 HHHHHHHHHHH...S--TTB-TTSHHH CS
   RNase_HII 175 trallkkgats...klpdivrlsfktv 198
                 t+++l++++t    +++++vr+s++t+
  CCD25559.1 246 TTKWLRENQTLlfgWPKEMVRFSWQTC 272
                 **********99*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2232.78
//
Query:       CCD25560.1  [L=708]
Description: hypothetical protein NDAI_0F02420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1752  (0.0977188); expected 358.6 (0.02)
Passed bias filter:                      221  (0.0123264); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 4804.35
//
Query:       CCD25561.1  [L=289]
Description: hypothetical protein NDAI_0F02430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-30  107.3   0.1    1.4e-30  106.9   0.1    1.2  1  Brix      Brix domain
  ------ inclusion threshold ------
       0.13   12.3   0.0        0.3   11.1   0.0    1.5  1  DUF4128   Bacteriophage related domain of unknown function


Domain annotation for each model (and alignments):
>> Brix  Brix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.1   1.5e-34   1.4e-30       1     192 [.      92     258 ..      92     259 .. 0.89

  Alignments for each domain:
  == domain 1  score: 106.9 bits;  conditional E-value: 1.5e-34
                 BTT--HHHHHHHHHHHHHCTTSEEEEEEECT-TTTHHHHHHH...-HHHHHHHH..HCTCSEEEEEE..SSTTEEEEEEEEECECTGGGSTTTSTS-TT CS
        Brix   1 grktssrlrqllkdlrslmkphtasflkrnsnklkdlvelag...vthlellse..kndcslfvfelskkrPngptlefkvenyslmkdlkkakktefg 94 
                 +r++s rl+q++k+++ l+++  a +l r+++ + +lv+ +    +++l++l+e    ++sl v+++    P+gpt++f+++n++l++d+ +a +++++
  CCD25561.1  92 SRDPSTRLSQFAKEIKLLFPN--AVRLNRGNYVMPNLVSACInsgTSDLIILHEhrGVPTSLTVSHF----PHGPTAYFSLHNVVLRHDILNA-GNQSE 183
                 6899***************54..666889999*****9999999**********988889*******....*******************999.8888* PP

                 ---EEEEES.HHH.....HHHHHHHHHHH..SEEEG..-B-GG-SEEEEEEES.CCTTTECEEEEE..EEEEEE..STTTTECT..T..EEEEEEESEE CS
        Brix  95 srPllvfngkenf.....kllksllqdlFrvpkislkspklsglrrvvlftaaenqetdktisfRh..YaiklkksgkklpnlekekkerveLeEiGPr 186
                  +P+l+f+   nf     k++ ++l++lF  p +++      +  rv++f    n   d +is+R+  Y  +               ++ ve+ E+GPr
  CCD25561.1 184 VNPHLIFD---NFttdlgKRVVTILKHLF-APGVKV------DSSRVITFA---NRG-D-FISVRQhvYVKT---------------RDGVEMAEVGPR 252
                 ********...999999************.776665......889******...555.6.9****7346553...............358********* PP

                 EEEEEE CS
        Brix 187 fdLklr 192
                 f+++l+
  CCD25561.1 253 FEMRLY 258
                 ****97 PP

>> DUF4128  Bacteriophage related domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   3.4e-05       0.3      40     101 ..      61     122 ..      53     129 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.4e-05
     DUF4128  40 svvpadtepltlggdddrrrtGlfqvtvvtp.lgqgvaeadqiAdeiaalFpdglrlaegglv 101
                 s++ ad e+l+++ d++  + G++   + +    + + + +q A+ei+ lFp++ rl++g+ v
  CCD25561.1  61 SHPDADKEELEID-DEYSHTSGIVEPRIIVStSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYV 122
                 6778888888998.888888899987765550455667889*******************977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       576  (0.0321267); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2269.69
//
Query:       CCD25562.1  [L=726]
Description: hypothetical protein NDAI_0F02440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-10   39.6   0.1    1.2e-09   37.8   0.1    2.1  1  DUF1752   Fungal protein of unknown function (DUF1752)


Domain annotation for each model (and alignments):
>> DUF1752  Fungal protein of unknown function (DUF1752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.1   6.8e-14   1.2e-09       1      28 []      46      73 ..      46      73 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 6.8e-14
     DUF1752  1 lWkyytkkkkdlpngeRLENlSWRlWnk 28
                l++ +++++k +++geRL+NlSWR++nk
  CCD25562.1 46 LYTSLITCSKFIEQGERLHNLSWRIMNK 73
                68899**********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2278  (0.127057); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 4664.59
//
Query:       CCD25563.1  [L=530]
Description: hypothetical protein NDAI_0F02450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-22   80.0   0.0    4.3e-22   78.8   0.0    1.7  1  DnaJ_C         DnaJ C terminal domain
    8.3e-22   77.1   3.5    1.9e-21   75.9   3.5    1.7  1  DnaJ           DnaJ domain
    3.2e-11   43.4  15.6    8.8e-11   42.0  15.6    1.8  1  DnaJ_CXXCXGXG  DnaJ central domain


Domain annotation for each model (and alignments):
>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   7.2e-26   4.3e-22       1     148 []     173     428 ..     173     428 .. 0.85

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 7.2e-26
                 EEEEEEE-HHHHHH-.EEE.EEEE........................................................................TEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.................................................................xxxxxxx RF
      DnaJ_C   1 ieveleisleelykGktkkikikrnvi.................................................................kkekktl 34 
                 i++ l+++l+ely+Gk+ k+ ++r++                                                                   +e++++
  CCD25563.1 173 IKHVLNCTLKELYQGKKCKLGLNRTRSchscngmggmntiicnecqgkgintetkmlgpmvqswsstcfncsgmgyfidsqsgckecqgegyLRERTIF 271
                 6789********************999****************************************************************9778889* PP

                 EEEE-TT--TT-EEEETT-SS.........SS...S---EEEEEEE---SS-EEE..................TTEEE.EEEEEEHHHHHHTEEEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxx.........xxx.xxxxxxxxxxxxxxxxxxxxx..................xxxxx.xxxxxxxxxxxxxxxxxxxx RF
      DnaJ_C  35 evkipaGikdgqkirlegeGd.........eeg.gepGDlivtikvkphpvFkrk..................gndly.veveislaeallGgklevpt 104
                 +v++++G++++qki+l+ge+d         +   + pGD+i++i++ + + +k +                  ++dl+  +++i+l + l+Gg++ ++ 
  CCD25563.1 272 TVTVKPGMRNNQKIVLKGEADqvmlvgklnK-EkVIPGDVIIVINQIEGKSWKNDsnidqgenknkfhfeiinEKDLLlRNCQIDLITSLCGGEIYIKN 369
                 *********************9988877643.26***********44555555444455555555555556679998777788************6665 PP

                 S..S-EEEE.....EE--TT-EEEETT-S-EET...........TEE--EEEEEEEE-- CS
                 x..xxxxxx.....xxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxx RF
      DnaJ_C 105 l..dgkvkl.....kitqpgevlrikgkGmpklk........kpgkrGdlyvevkvefP 148
                    ++ +kl     +i++p+  +++++ Gmp++         +   +Gdly+++kv++P
  CCD25563.1 370 HpsGKLIKLdiipsEILKPDCLKCVENLGMPRYIedetnngeEYLPNGDLYIQFKVKYP 428
                 5444445665566677****************998888765555568**********99 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   3.5   3.2e-25   1.9e-21       2      63 .]      14      75 ..      13      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 75.9 bits;  conditional E-value: 3.2e-25
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +Y+iL+v++ a+  eIk+aY+klalkyHPDkn++++e++ kF+ei +AyevL d++k+  YD
  CCD25563.1 14 LYSILQVPTAATLFEIKNAYKKLALKYHPDKNNHSEESKLKFQEICKAYEVLHDKDKKLLYD 75
                7*******************************9999*************************9 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0  15.6   1.5e-14   8.8e-11       1      67 []     200     263 ..     200     263 .. 0.87

  Alignments for each domain:
  == domain 1  score: 42.0 bits;  conditional E-value: 1.5e-14
  DnaJ_CXXCXGXG   1 CkkCkGsgakkgkkktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C++C+G g    ++  C++C+G+G  +e++  lgp+vq+ +stC +C+G G +i++++ Ck+C+G+g
     CCD25563.1 200 CHSCNGMGG--MNTIICNECQGKGINTETK-MLGPMVQSWSSTCFNCSGMGYFIDSQSGCKECQGEG 263
                    ********7..45667********433333.4999*******************99999******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1088  (0.0606838); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3703.43
//
Query:       CCD25564.1  [L=447]
Description: hypothetical protein NDAI_0F02460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      287  (0.0160076); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3370.56
//
Query:       CCD25565.1  [L=444]
Description: hypothetical protein NDAI_0F02470, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.2    6.6   6.2         47    4.3   0.6    2.6  2  Adeno_E3B  Adenovirus E3B protein


Domain annotation for each model (and alignments):
>> Adeno_E3B  Adenovirus E3B protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.6    0.0026        47      10      32 ..      16      40 ..      12      49 .. 0.82
   2 ?    4.3   0.6    0.0026        47      10      32 ..     110     134 ..     106     143 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0026
   Adeno_E3B 10 ppftvyllygfvt..lilicslvtv 32
                pp+t  ++ g vt  +i+ csl t 
  CCD25565.1 16 PPYTTTIVTGTVTetVIVSCSLTTN 40
                99*********96337888999885 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0026
   Adeno_E3B  10 ppftvyllygfvt..lilicslvtv 32 
                 pp+t  ++ g vt  +i+ csl t 
  CCD25565.1 110 PPYTTTIVTGTVTetVIVSCSLTTN 134
                 99*********96337888999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1041  (0.0580624); expected 358.6 (0.02)
Passed bias filter:                      208  (0.0116013); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.41
# Mc/sec: 3216.51
//
Query:       CCD25566.1  [L=391]
Description: hypothetical protein NDAI_0F02480, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-47  159.3   0.8    2.2e-46  158.0   0.1    1.9  2  EOS1      N-glycosylation protein


Domain annotation for each model (and alignments):
>> EOS1  N-glycosylation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.068   1.2e+03      77      94 ..     110     127 ..      55     147 .. 0.79
   2 !  158.0   0.1   1.2e-50   2.2e-46       2     113 ..     159     332 ..     158     384 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.068
        EOS1  77 tltlseivqswvtSnlad 94 
                   tl+  +q+++  n++ 
  CCD25566.1 110 KETLTAFWQTYIFTNITF 127
                 568889999999999975 PP

  == domain 2  score: 158.0 bits;  conditional E-value: 1.2e-50
        EOS1   2 leyvlaslWslvsaylayslldsLlvrWlvyYsilaaliRllslqaiiwplvllllsvlsadkeqplaaWivisttltlseivqswvtSnladaeld.. 98 
                 +e++l+slW+lvs+yl+y++ldsL+vrW+v+Ys++aa++R++s+++i+++l+lll+++ls++++++l++Wi+is++lt+++i+qs++tS+l+d +++  
  CCD25566.1 159 SEHFLCSLWCLVSLYLTYAILDSLMVRWIVKYSTVAAIMRMFSMSLILITLELLLVASLSPEQDYFLHTWILISCILTVVYIWQSYLTSDLNDNNKHnn 257
                 89*****************************************************************************************99877755 PP

        EOS1  99 ..............srevksrssaaerl..........................................................e 113
                               +                                                                        
  CCD25566.1 258 hkngfkvvdnfvdeE------------FftaarrlntkdelpgkneysgaktifdldednhvycqenaersfcegeeeasdsneifD 332
                 555555554444431............033333344444455555555555566665555555555555555555444333333331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       973  (0.0542696); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2946.56
//
Query:       CCD25567.1  [L=120]
Description: hypothetical protein NDAI_0F02490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-17   61.8   0.1    7.6e-15   55.4   0.1    2.0  1  Ribosomal_S13  Ribosomal protein S13/S18
     0.0042   15.9   0.0     0.0042   15.9   0.0    1.1  1  FbpA           Fibronectin-binding protein A N-terminus (FbpA
  ------ inclusion threshold ------
      0.016   15.5   0.0      0.039   14.3   0.0    1.7  1  IMS_HHH        IMS family HHH motif
       0.17   11.5   0.0       0.22   11.1   0.0    1.1  1  DUF1182        Protein of unknown function (DUF1182)


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.1   1.7e-18   7.6e-15       2     128 .]       5     110 ..       4     110 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 1.7e-18
  Ribosomal_S13   2 ilgtdidgkkkveialt.aikGiGrrkakiilkkadvdedkrigelteeeiekieeivenkaqykipnwinrqkdikdGkdshvvendlrrklred 96 
                    ilg   +gk+ ++i l+ + +GiG+ +a++++ k++    +r+++l+e +i +++ +++n                      +++e++ r  +r++
     CCD25567.1   5 ILGKAFKGKELISIGLAsKFYGIGNSTAQQLCSKLGFYPAMRMHQLSETQILTLVSVLSN----------------------MTIEGEARAIVRDN 78 
                    66777888999999997369****************************************......................89************ PP

  Ribosomal_S13  97 ieRlkkirsyrGlRHkrGlkvRGQrTkttgRt 128
                    i  +kki+ y G+RH   l+vRGQ+T+++++t
     CCD25567.1  79 IAMKKKIGIYEGMRHALHLPVRGQNTRNNAKT 110
                    *****************************987 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   9.3e-07    0.0042     187     241 ..      14      68 ..       4     109 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.3e-07
                 XXXHHHHHHHBTTXXHHHHHHHHTTXSSSH...............HHHHHHHHTX CS
        FbpA 187 kdlvkaLvkafqGlspllaeelleragldketsakelseedlerlyealqellee 241
                 + ++  L+++f G+++ +a++l++++g+ ++ ++++lse+++ +l + l+++  e
  CCD25567.1  14 ELISIGLASKFYGIGNSTAQQLCSKLGFYPAMRMHQLSETQILTLVSVLSNMTIE 68 
                 56667799*************************************9999988655 PP

>> IMS_HHH  IMS family HHH motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   8.7e-06     0.039      14      31 ..      22      40 ..      21      41 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.7e-06
     IMS_HHH 14 tkipGiGgklgek.LeklG 31
                +k++GiG +++++ + klG
  CCD25567.1 22 SKFYGIGNSTAQQlCSKLG 40
                79***********999998 PP

>> DUF1182  Protein of unknown function (DUF1182)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.9e-05      0.22     153     200 ..      20      67 ..       3      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.9e-05
     DUF1182 153 iailnyplgefekndvcavlrfskamelvrisltlflnlaavivnvvi 200
                 +a   y +g+   ++ c  l f  am + ++s t  l l++v+ n++i
  CCD25567.1  20 LASKFYGIGNSTAQQLCSKLGFYPAMRMHQLSETQILTLVSVLSNMTI 67 
                 56667999*************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 895.56
//
Query:       CCD25568.1  [L=708]
Description: hypothetical protein NDAI_0F02500, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      140  (0.00780858); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.86u 0.44s 00:00:02.30 Elapsed: 00:00:00.70
# Mc/sec: 3061.58
//
Query:       CCD25569.1  [L=787]
Description: hypothetical protein NDAI_0F02510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-24   84.2   0.3    5.1e-24   84.2   0.3    2.0  2  DNA_mis_repair  DNA mismatch repair protein, C-terminal domai
    8.4e-24   84.0   0.5    1.5e-23   83.2   0.0    1.7  2  MutL_C          MutL C terminal dimerisation domain
    2.5e-10   40.3   2.7    6.5e-10   39.0   0.0    2.8  3  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
    3.5e-06   27.5   0.1    1.3e-05   25.7   0.1    2.0  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l


Domain annotation for each model (and alignments):
>> DNA_mis_repair  DNA mismatch repair protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.3   1.1e-27   5.1e-24      20     113 ..     258     352 ..     239     357 .. 0.90
   2 ?   -2.8   0.1       1.1   4.9e+03      85     102 ..     482     499 ..     481     509 .. 0.77

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 1.1e-27
                     ETTEEEEEEEE-CC..G-BTTGGEEEEEETTEEE--HHHHHHHHHHHHCCSSSSSB-EEEEEEEESSGGEE-TSSTT----EETTHHCHHHHHHH CS
  DNA_mis_repair  20 eeqlkieGfiskpe..lsrskrdkqflfvNgRlvkskelkkaireaYkellpkgrypvvvLnleidpeevDvNvhPtKreVrfqdeeevieaiee 112
                     + +++++G+isk++  + r+++d+qf+++N+R+++ ++l+k+++++Y+ ++++ ++p ++Lnl i+p+ +DvNv+P+Kr V++q+e+ v+e ++ 
      CCD25569.1 258 DYTIQVKGYISKHSlgCGRNSKDRQFFYINKRPIEYPQLSKCCNDIYR-QFNNAQFPSIFLNLVIPPQVIDVNVTPDKRIVFLQNEKYVLEELKI 351
                     4469*********877999*****************************.99***************************************99876 PP

                     H CS
  DNA_mis_repair 113 a 113
                      
      CCD25569.1 352 R 352
                     5 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.1
                     GGEE-TSSTT----EETT CS
  DNA_mis_repair  85 eevDvNvhPtKreVrfqd 102
                     +e+DvN++   ++Vrfq 
      CCD25569.1 482 DEIDVNLEKIEKRVRFQL 499
                     589***998888999985 PP

>> MutL_C  MutL C terminal dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.8   7.9e+03      32      60 ..     342     369 ..     332     386 .. 0.59
   2 !   83.2   0.0   3.3e-27   1.5e-23       4     147 .]     589     741 ..     587     741 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.8
                 HHHHHHHHHHHCCHSSB-EEEEEEEEEEE CS
      MutL_C  32 erilyeklkeqlkeeelksQpLliPlvle 60 
                 e+++ e+lk  l e     Q L++P   +
  CCD25569.1 342 EKYVLEELKIRLYE-YFDNQDLVLPKQQS 369
                 45555555555544.24566666665444 PP

  == domain 2  score: 83.2 bits;  conditional E-value: 3.3e-27
                 EEEEEETTTEEEEEE....TTEEEEEEHHHHHHHHHHHHHHHHCCHSSB-EEEEEEEEEEE--HHHHHHHHHCHHHHHHCT-EEEE....-STTEEEEE CS
      MutL_C   4 kalgqvhgtyilaen....edglvlvDqhaAherilyeklkeqlkeeelksQpLliPlvlelspeeaalleehkeeLaklGfelee....fgpnslivr 94 
                 k++gq++ ++i++ +    + +l+++DqhaA+e++++e+l++ ++    ksQ+L++P  +els  ++ ++ ++ ++++k+Gf+l       +++++++ 
  CCD25569.1 589 KIVGQFNLGFIIVTRkignDYDLFVIDQHAADEKYNFERLQKITTF---KSQRLIVPQPVELSIIDELIVIDNHSTFEKNGFKLIIdknaSQGQKIKIV 684
                 579*********9986654677*******************77776...9**********************************988888999****** PP

                 EEECCCTTTSHHHHHHHHHHHHCCCSS...-H.-HCCHHHHHHHHCTTSSSSSS--- CS
      MutL_C  95 avPallrqqnleelirelleelaekgk...es.leekleellatmachssvkagrrl 147
                 a P+ ++      +++el++ ++e+ +   e+   +k ++l+a++ac+ssv+ g++l
  CCD25569.1 685 ALPVSKQTMINIDDFNELIHAIRENAGlntEDlRCSKYRKLFAMRACRSSVMVGKPL 741
                 ****999999999999999999999999863458899***************99876 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.5e-13   6.5e-10       4      94 ..      26     116 ..      23     150 .. 0.75
   2 ?   -0.4   0.2      0.21   9.3e+02      83     121 ..     377     416 ..     371     433 .. 0.78
   3 ?   -2.4   0.0      0.85   3.8e+03      43      87 ..     564     608 ..     540     646 .. 0.56

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.5e-13
  HATPase_c_3   4 ekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelkn.alrlatsskeakr...kstslGkkGiGlklAslslgkkltvitkk 94 
                   +A+ elvdNs+dA+a++++i +++     ++i   D+G+G+++e+ +  al+  ts+ ++       +slG +G    l+sl   +kl v+t++
   CCD25569.1  26 VTAVKELVDNSIDAHATQIDIIFKNYG--IESIECSDNGDGITPENYEFlALKHYTSKISTFDdvlHIQSLGFRGEA--LSSLCGIAKLIVTTTS 116
                  68***********************84..79**************98876777666666544433456677777755..5555555555555554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.21
  HATPase_c_3  83 slgkkltvitkkegess.tltldvdkidkenekvleeltv 121
                  +++kk  ++++ke+e++ t+   +++++++++++++   +
   CCD25569.1 377 RIAKKRRLESTKENEKYaTADSITKFLKEKGKENVKSCVI 416
                  6788999999999999977888888888888888876554 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 0.85
  HATPase_c_3  43 kGmsee.elknalrlatsskeakrkstslGkkGiGlklAslslgkk 87 
                  +Gm++  e +++l+l+ ++++  +k +++G++ +G    + ++g++
   CCD25569.1 564 TGMKNIgEGDQYLTLMVKKED-FKKMKIVGQFNLGFIIVTRKIGND 608
                  555555444455555555555.345555555555544444444443 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.1   2.9e-09   1.3e-05       4      63 ..      23      79 ..      20     153 .. 0.71

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 2.9e-09
                HHHHHHHHHHHHHHHHHHSTTTEEEEEEEEEE.TEEEEEEEESSSSSTTHHHT....GTCSTTCH CS
   HATPase_c  4 krLrqiisnlvdNavkfatkageieveikase.ddlvisveDnGiGipkedlk....klfekfsq 63
                + L  ++++lvdN++++  +a++i++  k  + +  +i+ +DnG Gi++e+ +    k    +++
  CCD25569.1 23 IDLVTAVKELVDNSIDA--HATQIDIIFK--NyGIESIECSDNGDGITPENYEflalK----HYT 79
                578999**********6..99********..446889**************9954442....333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       884  (0.0493056); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5400.15
//
Query:       CCD25570.1  [L=555]
Description: hypothetical protein NDAI_0F02520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-60  201.7   4.4    1.9e-21   75.7   0.1    3.3  3  Mito_carr     Mitochondrial carrier protein
    1.2e-14   54.5   2.7      2e-09   37.8   1.1    2.8  2  EF-hand_7     EF-hand domain pair
    2.1e-10   39.6   4.7      0.011   15.6   0.1    4.6  4  EF-hand_6     EF-hand domain
    6.4e-09   34.7   4.9      0.019   14.5   0.2    4.8  5  EF-hand_1     EF hand
    6.8e-08   32.2   2.5    8.7e-06   25.5   0.4    3.1  3  EF-hand_8     EF-hand domain pair
    0.00037   19.8   2.5      0.072   12.6   0.1    2.9  3  EF-hand_5     EF hand
     0.0046   17.3   3.3      0.019   15.3   0.5    2.5  2  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.2   1.5e-21   3.9e-18       6      95 ..     238     345 ..     235     347 .. 0.84
   2 !   61.2   0.1   2.7e-20   6.8e-17       3      96 ..     355     448 ..     353     449 .. 0.94
   3 !   75.7   0.1   7.6e-25   1.9e-21       3      94 ..     462     553 ..     460     555 .] 0.96

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 1.5e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..................CCCSSTTTSCSS..........HHHHHHHHHHHHHHHGGGTTHHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqt..................qkksskksksaa..........ildvlkkiykeeGlrglyrGllpnllrva 76 
                 + +++aGgl+g+++ ++t+P+d++K+ l +                  +          +          i +++ ++y++ G+r++y G++ ++++v 
  CCD25570.1 238 FGYFIAGGLSGVISRTATAPFDRIKVFLIArtdlsstllnskatvlakN----------PkanlnklrspITKAITTLYRQGGVRAFYVGNGLSVFKVC 326
                 6789**************************6666666666555544433..........04455556667***************************** PP

                 HHHHHHHHHHHHHHHHHCT CS
   Mito_carr  77 pasalkfvlyetlkrlllk 95 
                 p+s++kf+++e +kr + +
  CCD25570.1 327 PESSIKFGTFELVKRAMSN 345
                 ***************9865 PP

  == domain 2  score: 61.2 bits;  conditional E-value: 2.7e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlllkk 96 
                 ls +++ +aGglag+v+++ ++P+d++K r+q ++   k ++++ ++ + +++yke Gl  +y+G+++  ++++p++al ++++  lk+++ k+
  CCD25570.1 355 LSRFHTYIAGGLAGMVSQISIYPIDTLKFRIQCAPLDCKLKGNQLLFATASNMYKEGGLGMFYKGAIVGAVGIFPYAALDLGTFSALKKWYIKR 448
                 5668899****************************9988888777*********************************************9886 PP

  == domain 3  score: 75.7 bits;  conditional E-value: 7.6e-25
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ls+l+ l +G+++g+v++++++P+ +++trlqtq++ ++   +++++dv+ k+++ eG+ gly+Gl+p+l +v pa ++  ++ye +k+l++
  CCD25570.1 462 LSYLQVLPMGAISGSVGATAVYPINLLRTRLQTQATFAHPYLYTGFRDVFTKTIQREGIPGLYKGLVPTLAKVCPAVSIGYLCYENFKKLMK 553
                 67889999********************************99999********************************************986 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   1.1   7.8e-13     2e-09       5      70 ..      19      80 ..      14      81 .. 0.85
   2 !   15.2   0.0   8.4e-06     0.022       2      40 ..      85     124 ..      84     161 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 7.8e-13
   EF-hand_7  5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFlkly 70
                k +Fk+lD ++ g+ d++ l+++++  +   ++ ++  de+++ lf  +D+++d v+++++F+k++
  CCD25570.1 19 KSIFKQLDIHNEGKFDYSTLRKAFQDSN---HPLKS-NDEAIRFLFTAMDSNNDNVVDYNDFMKYV 80
                567*******************999532...55555.5688**********************997 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 8.4e-06
   EF-hand_7   2 eklkeaFkelDtdgdgyldkeellrllrkifqga.gegsk 40 
                 ++++e F+ +D d+dg++ ++++ ++l k++ ++ + g+k
  CCD25570.1  85 SQIEEGFQNIDLDHDGKIKPSDVSNYLSKLDIKNaDIGNK 124
                 789999******************9999988776644444 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00053       1.3       2      27 ..      18      43 ..      17      50 .. 0.91
   2 !   15.6   0.1   4.4e-06     0.011       2      26 ..      56      80 ..      55      83 .. 0.91
   3 !   12.6   0.1   3.8e-05     0.098       2      30 ..      87     114 ..      86     121 .. 0.88
   4 ?   -0.1   0.0      0.47   1.2e+03      12      26 ..     180     195 ..     178     199 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00053
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkalr 27
                 +++Fk++D  + Gk d++ lrka++
  CCD25570.1 18 YKSIFKQLDIHNEGKFDYSTLRKAFQ 43
                589*********************98 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4.4e-06
   EF-hand_6  2 lreaFklfDkdgdGkidaeElrkal 26
                +r +F ++D ++d+ +d+++++k  
  CCD25570.1 56 IRFLFTAMDSNNDNVVDYNDFMKYV 80
                7899*****************9975 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 3.8e-05
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkal 30 
                 ++e F+ +D d+dGki ++++ + l+ +l
  CCD25570.1  87 IEEGFQNIDLDHDGKIKPSDVSNYLS-KL 114
                 6788*****************99999.44 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.47
   EF-hand_6  12 dgdG.kidaeElrkal 26 
                 d+d  +i+++++r++l
  CCD25570.1 180 DRDQlYITYNQWRDFL 195
                 778889*******998 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.014        36       3      27 ..      19      43 ..      17      45 .. 0.90
   2 !   14.5   0.2   7.4e-06     0.019       2      26 ..      56      80 ..      55      82 .. 0.91
   3 !   13.0   0.0   2.3e-05     0.058       2      28 ..      87     113 ..      86     114 .. 0.87
   4 ?   -2.3   0.0       1.7   4.3e+03      16      26 ..     185     195 ..     185     197 .. 0.89
   5 ?    1.3   0.0      0.13   3.2e+02      15      27 ..     541     553 ..     541     555 .] 0.93

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.014
                HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkellk 27
                k iF+ +D  + Gk d++ ++++++
  CCD25570.1 19 KSIFKQLDIHNEGKFDYSTLRKAFQ 43
                88****************9999986 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 7.4e-06
                HHHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  2 lkeiFrefDkDgdGkIdfeEfkell 26
                ++ +F  +D ++d  +d+++f++++
  CCD25570.1 56 IRFLFTAMDSNNDNVVDYNDFMKYV 80
                6889******************987 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 ++e F+ +D D+dGkI  ++  ++l+k
  CCD25570.1  87 IEEGFQNIDLDHDGKIKPSDVSNYLSK 113
                 7899************99998888876 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1.7
                 EEEHHHHHHHH CS
   EF-hand_1  16 kIdfeEfkell 26 
                 +I++++++++l
  CCD25570.1 185 YITYNQWRDFL 195
                 8******9987 PP

  == domain 5  score: 1.3 bits;  conditional E-value: 0.13
                 SEEEHHHHHHHHH CS
   EF-hand_1  15 GkIdfeEfkellk 27 
                 G++ +e fk+l+k
  CCD25570.1 541 GYLCYENFKKLMK 553
                 99**********8 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.89   2.3e+03      30      42 ..      20      32 ..      18      44 .. 0.86
   2 !   25.5   0.4   3.4e-09   8.7e-06      22      52 ..      50      80 ..      30      83 .. 0.83
   3 !    5.4   0.0    0.0062        16      25      51 ..      84     110 ..      81     114 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.89
   EF-hand_8 30 ilfrefDtdgdGk 42
                ++f+ +D+ + Gk
  CCD25570.1 20 SIFKQLDIHNEGK 32
                69********998 PP

  == domain 2  score: 25.5 bits;  conditional E-value: 3.4e-09
   EF-hand_8 22 glseeevdilfrefDtdgdGkisfeEFcvll 52
                + ++e+++ lf ++D ++d+++++++F+ ++
  CCD25570.1 50 KSNDEAIRFLFTAMDSNNDNVVDYNDFMKYV 80
                468999**********************998 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0062
   EF-hand_8  25 eeevdilfrefDtdgdGkisfeEFcvl 51 
                 e+++++ f  +D+d+dGki+  +  ++
  CCD25570.1  84 ESQIEEGFQNIDLDHDGKIKPSDVSNY 110
                 6677777999*********96666555 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.5   1.2e+04       4       9 ..      21      26 ..      19      26 .. 0.81
   2 !    6.2   0.1     0.003       7.8       5      22 ..      60      77 ..      57      80 .. 0.87
   3 !   12.6   0.1   2.8e-05     0.072       3      16 ..      89     102 ..      87     104 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.5
                HHHHH- CS
   EF-hand_5  4 tFqaiD 9 
                 F+++D
  CCD25570.1 21 IFKQLD 26
                79**99 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.003
                HHHH-SS-SSCE-HHHHH CS
   EF-hand_5  5 FqaiDlNgDGkIskeELk 22
                F a+D N+D  ++   ++
  CCD25570.1 60 FTAMDSNNDNVVDYNDFM 77
                99***********98886 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 2.8e-05
                 HHHHHH-SS-SSCE CS
   EF-hand_5   3 dtFqaiDlNgDGkI 16 
                 + Fq iDl++DGkI
  CCD25570.1  89 EGFQNIDLDHDGKI 102
                 55***********9 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.5   7.4e-06     0.019      37     106 ..      37     103 ..       8     110 .. 0.70
   2 ?    1.9   0.1      0.11   2.7e+02      41      77 ..     133     169 ..     108     180 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.4e-06
  SPARC_Ca_bdg  37 leelekkeeeknlkeckepvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDadkdkkis 106
                   + +++ ++ ++ lk+  e++++ F+ +D n+d+v++ ++  +  +     e+ i++ +++ D+d+d+ki+
    CCD25570.1  37 TLRKAFQDSNHPLKSNDEAIRFLFTAMDSNNDNVVDYNDFMKYVT---VAESQIEEGFQNIDLDHDGKIK 103
                   333444556666777888999999999999999999988766544...7899999999999999999987 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.11
  SPARC_Ca_bdg  41 ekkeeeknlkeckepvawkFsklDtnsdkvlsksELa 77 
                   ++ + +++ +++++ ++w F k    +d++ +k+E++
    CCD25570.1 133 NTYNIKNSPSRFNNFIHWAFYKKLESNDNIENKEEVS 169
                   445567778889999***9988777788888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 3927.94
//
Query:       CCD25571.1  [L=100]
Description: hypothetical protein NDAI_0F02530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00015   22.1   4.9    0.00019   21.8   4.9    1.1  1  Snapin_Pallidin  Snapin/Pallidin
     0.0013   18.7   1.0     0.0017   18.3   1.0    1.2  1  YscO             Type III secretion protein YscO
  ------ inclusion threshold ------
       0.36   11.5   3.0        5.8    7.6   0.4    2.0  2  YabA             Initiation control protein YabA
       0.74    9.9   7.3        1.2    9.2   3.5    2.4  2  DUF2205          Short coiled-coil protein


Domain annotation for each model (and alignments):
>> Snapin_Pallidin  Snapin/Pallidin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   4.9   4.2e-08   0.00019       8      89 ..      17      96 ..      15      97 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.2e-08
  Snapin_Pallidin  8 lellepkldeldeklkelrqsQeeLleqldrlnekLkeleeaqeaevlpdlkeyakKLvnikkrmsslnerlqklkkRaekL 89
                     +++l+++ldel +++++lr+s   L  ++++ +++Lk+  ++      + l++ ++KL++++krm  l +r +++k+R +kL
       CCD25571.1 17 YSVLSSDLDELYHSINQLRESEAFLILSVKKIRDSLKKEHRILY--EKELLRKPLDKLKTLQKRMDILLKRYEEIKRRNKKL 96
                     68999********************************9999888..56788999************************9887 PP

>> YscO  Type III secretion protein YscO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   1.0   3.9e-07    0.0017      57     132 ..      13      91 ..      12      98 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.9e-07
                 HHHTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YscO  57 eiigklvllkelekvkqqvalLrekeaelekqveeakqqleaereal...rqarkelqearraveKfaelarlvraeas 132
                 e++   vl ++l+++ + +  Lre ea l   v+++++ l++e + l   + +rk l + +  +++++ l ++ ++ ++
  CCD25571.1  13 ELCVYSVLSSDLDELYHSINQLRESEAFLILSVKKIRDSLKKEHRILyekELLRKPLDKLKTLQKRMDILLKRYEEIKR 91 
                 677788999********************************99876511155677777777777777777776665555 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.4    0.0013       5.8      21      70 ..      21      69 ..       3      75 .. 0.63
   2 ?    6.1   0.6    0.0039        17       7      36 ..      69      98 ..      61      99 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0013
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXXXX CS
        YabA 21 leeleelkeelaelleenaeLeleneklrerleeeekkekekkkelsegk 70
                +++l+el +++++l e +a L l  +k+r+ l++e+ +   +k+ l++  
  CCD25571.1 21 SSDLDELYHSINQLRESEAFLILSVKKIRDSLKKEH-RILYEKELLRKPL 69
                556677777777777777777777777777774333.3333333344444 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0039
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  7 fdkleeleeqleelleeleelkeelaelle 36
                +dkl++l+++++ ll++ ee+k++ ++l+e
  CCD25571.1 69 LDKLKTLQKRMDILLKRYEEIKRRNKKLIE 98
                566777777777777777777777776665 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.8     0.051   2.3e+02      38      45 ..      30      37 ..      17      64 .. 0.45
   2 ?    9.2   3.5   0.00026       1.2      18      49 ..      62      96 ..      49      99 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.051
     DUF2205 38 rvdeVkee 45
                 +++ +e 
  CCD25571.1 30 SINQLRES 37
                33333332 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00026
     DUF2205 18 rerLqq...qakeLqssLqaLaervdeVkeehdKL 49
                +e L++   + k+Lq+ ++ L++r +e+k  ++KL
  CCD25571.1 62 KELLRKpldKLKTLQKRMDILLKRYEEIKRRNKKL 96
                44555555589***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1325  (0.0739026); expected 358.6 (0.02)
Passed bias filter:                      646  (0.036031); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 728.42
//
Query:       CCD25572.1  [L=1179]
Description: hypothetical protein NDAI_0F02540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-52  173.7   2.4    4.6e-22   78.2   0.0    5.4  5  C2        C2 domain


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.0    0.0092   1.6e+02      43      75 ..     209     249 ..     188     263 .. 0.80
   2 !   34.0   0.0   1.5e-12   2.7e-08       1      94 [.     381     476 ..     381     484 .. 0.83
   3 !   13.1   0.2     5e-06      0.09       8      74 ..     531     596 ..     505     621 .. 0.77
   4 !   40.5   0.0   1.4e-14   2.5e-10       1      90 [.     654     742 ..     654     754 .. 0.92
   5 !   78.2   0.0   2.6e-26   4.6e-22       1      95 [.     987    1083 ..     987    1091 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.0092
                 SSSSSEEEEEEEEEESC........HTTSEEEEEEEEECSS CS
          C2  43 nslnPvWnekftfevae........leeakLeveVfdndrl 75 
                 + ++ +W  +ft+ +++        l++++L v V+d+++ 
  CCD25572.1 209 KWIKAIWIDEFTLGIKPprigyvktLQNTHLDVVVMDWNVS 249
                 45566789999999999999999999***********9884 PP

  == domain 2  score: 34.0 bits;  conditional E-value: 1.5e-12
                 TEEEEEEEEEESSSSSSTTSS.....CEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTT CS
          C2   1 gklevtvieAknLpnkdkkgs.....sdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsg 94 
                 g+le++v+  k+ +++  +g        pyv+  +++ ++akT+  k+  +P+W+e ++++++   ++ L v +fd++++ kd+ +G +e++l++l ++
  CCD25572.1 381 GILEINVKAVKGFKRN--FGEllgkpGHPYVSFLFSNRVIAKTSASKDPNSPIWHEVVHIPIKS-FTEPLSVILFDKHKTLKDKNLGGIEFNLNSLRHR 476
                 5789999999999777..3333444589****************7777755*************.***********9999*************995443 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 5e-06
                 EEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECS CS
          C2   8 ieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndr 74 
                 i+   L n  ++++ d+yv+++++ k+++ T+ ++   n +W+ +++  + + + ++ ++ ++d+++
  CCD25572.1 531 IQESRLINE-IEKKFDTYVELYINAKKVFTTKKVSGVDNWRWKSQYESIILDRSMTRCKFVIKDKKS 596
                 333444444.5889*********99999***955555579******999999999********9776 PP

  == domain 4  score: 40.5 bits;  conditional E-value: 1.4e-14
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplst 90 
                 g++++ + +Ak  +n dk   ++py +v  ++ ++++T+   n+lnP+Wn+ +++ ++  +++k+ +e++d++ +++d  +G++ei+ + 
  CCD25572.1 654 GTVRILINKAKFTNNVDKIMEVNPYTRVLTNDLEIGRTNELLNELNPIWNQAIYVAITS-PNQKILLECMDSRLIGGDRSLGQLEISPRG 742
                 57889999**********99*******************99******************.**************************8766 PP

  == domain 5  score: 78.2 bits;  conditional E-value: 2.6e-26
                  TEEEEEEEEEESSSSSSTTSSCEEEEEEEE..ECEEEEEE-SCSSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHHHHTTH CS
          C2    1 gklevtvieAknLpnkdkkgssdpyvkvsl..dgkqkakTrviknslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplstllsge 95  
                  g+l++t++ A++L + d +g sdpyvk++l  ++k+ +kT++ k++lnPvWne+ t+++++  ++ ++++V d+d   ++d++G + +pls+++  +
  CCD25572.1  987 GDLTITIKGANDLIAGDRNGYSDPYVKLYLnnNEKSFFKTKISKKTLNPVWNESTTLQINDRVNTFIKFKVVDWDGALSNDLLGWAMLPLSQIDPAA 1083
                  689***************************999999*****99*************************************************87655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.43
# Mc/sec: 8238.92
//
Query:       CCD25573.1  [L=1420]
Description: hypothetical protein NDAI_0F02550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.5e-125  417.9   0.0   4.5e-125  417.9   0.0    2.0  3  DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
    1.9e-49  167.2   0.6    1.2e-48  164.6   0.6    2.5  1  TOPRIM_C       C-terminal associated domain of TOPRIM
    1.6e-26   92.8   4.0    3.2e-26   91.9   4.0    1.5  1  DNA_gyraseB    DNA gyrase B
    3.1e-13   50.2   0.0    9.7e-13   48.6   0.0    1.9  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
      1e-07   32.1   0.0    3.5e-07   30.4   0.0    1.9  1  Toprim         Toprim domain


Domain annotation for each model (and alignments):
>> DNA_topoisoIV  DNA gyrase/topoisomerase IV, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.6      0.92   3.3e+03     327     375 ..     332     386 ..     316     431 .. 0.47
   2 ?   -3.4   0.0      0.95   3.4e+03     163     205 ..     564     607 ..     552     615 .. 0.71
   3 !  417.9   0.0  1.3e-128  4.5e-125       1     425 [.     690    1157 ..     690    1158 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 0.92
  DNA_topoisoIV 327 llekleerleilegllkalnkidevievirkskkekkakkeLieelse.........e 375
                    l +k +++++  +   ++ n+  ++  +i++   ++++k+++ +++++         +
     CCD25573.1 332 LKKKKKKNIKPFQ---IKNNMFIFINCLIQNPAFTSQTKEQMTTRVKDfgskclisdD 386
                    3333333333333...444445555555555544555555555554443333333331 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.95
  DNA_topoisoIV 163 liallkgeeaellelvlgPdfptgggii.gkeeikeayetgrGk 205
                    ++  + +++ +++ +   Pd+++++ +  ++ + k++y +g G+
     CCD25573.1 564 IKVTVTKPSRQVIAFYNMPDYEQWRAEEaQNYTWKQKYYKGLGT 607
                    444556666688899999*****999885666678888777665 PP

  == domain 3  score: 417.9 bits;  conditional E-value: 1.3e-128
  DNA_topoisoIV    1 RaiPsvrDGlKPvqRriLyamfkllnldkkekKvaqlvGev..lgkYhPHGdaslydaivrlaqdfvg..niplldpqGnfGsildgdkd.Aaa 89  
                     R+iPsv DG+KP+qR++L+ +fk +nl ++e+Kvaql+ +v   ++Yh HG++sl+++i++laq+fvg  ni+ll+p+G fG++ +g+kd Aaa
     CCD25573.1  690 RSIPSVLDGFKPGQRKVLFGCFK-RNL-RSEIKVAQLAPYVaeCSAYH-HGEQSLAMTIIGLAQNFVGsnNINLLKPNGAFGTRATGGKDaAAA 780 
                     9**********************.999.***************9****.********************************************* PP

  DNA_topoisoIV   90 RYietrLskiarellkeidketvdyqenyDgsekEPevlppiiPnlLvnGaeGIavGmatkipphnlkeiidaliallkgeeaellelvlgPdf 183 
                     RYi+t+Lski+r+++++ d+++ +y+++ D++++EPe+++p++P++LvnGaeGI++G++t+ipp+n+ +i+++l++l++gee    e ++ P+f
     CCD25573.1  781 RYIFTELSKITRKIFHPSDDPLFKYVQD-DETTVEPEWYLPVLPMILVNGAEGIGTGWSTNIPPFNPLDIVKNLRHLMNGEEL---E-NMMPWF 869 
                     ****************************.****************************************************55...6.79**** PP

  DNA_topoisoIV  184 ptgggiigkeeikeayetgrGkikvrakveieektivitElPigvntskliekieelv.kkkkik..isdirdesdrgvrivielkrgaseekv 274 
                     +++gg ++k e +++y+   G+i++ +      +t++itElP +++ts+++e +   +  +++ k  i+d++++  +++++ i+l+++++e++ 
     CCD25573.1  870 KGWGGSVEKVE-HQRYRMY-GRIEQIGP-----NTLEITELPAKTWTSTIKEYLLLGIsGNERTKpwIKDMEEQHGNDIKFIIKLTPEEMEKTR 956 
                     *******8888.8999999.99999998.....59*****************99988865665555899******************7777777 PP

  DNA_topoisoIV  275 leklykktkLessisvnnlvlfdk.k..pkylslkeilkeflevrlevyerrkeyllekleerleilegllkalnkidevievirkskk.ekka 364 
                     +  +y+++ L s is+ n+v+fd  +  +ky s+ +il+ef+ vrle+y++rk+++ e+l+ ++e+l+       ++++++++i++++  ++k 
     CCD25573.1  957 KIGFYERFRLISPISLMNMVAFDPrGkiKKYESVFDILTEFFYVRLEYYQKRKDFMSERLQWEVEKLS------FQVKFIKMIIERELIvTNKP 1044
                     777********************9548*****************************************......9**************9**** PP

  DNA_topoisoIV  365 kkeLieelse......................................................eqaeyllemrlrrLtkeeveklekeieele 404 
                     +k++i+el+e                                                        +eyll mr+++Ltke++e+l k+++e e
     CCD25573.1 1045 RKNIIKELEEfgfprinkdgkpyygsiaqkveelieedeeaeeidndedvltddaiingpeeayGTFEYLLGMRIWSLTKERYEQLLKQKKERE 1138
                     ****************************************************************77**************************** PP

  DNA_topoisoIV  405 keikelekllaklkklikeel 425 
                      e+++l kl+a+  +l++ +l
     CCD25573.1 1139 IELEDLLKLSAS--DLWNIDL 1157
                     ************..9999887 PP

>> TOPRIM_C  C-terminal associated domain of TOPRIM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.6   0.6   3.3e-52   1.2e-48       1     128 []     559     688 ..     559     688 .. 0.98

  Alignments for each domain:
  == domain 1  score: 164.6 bits;  conditional E-value: 3.3e-52
    TOPRIM_C   1 FitPivkvtkkk..keeisffslpeyeewkestenlkkwkikYYkGLgtstskeakeyfsnldkhlkefkleeeedkeaielaFskkkaderkewlkkl 97 
                 FitPi+kvt +k  +++i+f+++p+ye+w+++++++ +wk kYYkGLgts+ +e++eyf++ldkhlk+f+  + +dk++i+laFskkkad+rkewl+ +
  CCD25573.1 559 FITPIIKVTVTKpsRQVIAFYNMPDYEQWRAEEAQNYTWKQKYYKGLGTSSGQEVREYFKDLDKHLKTFHALQGHDKDLIDLAFSKKKADDRKEWLRLY 657
                 9********98666899********************************************************************************** PP

    TOPRIM_C  98 epgtyldkkkkkisysdFvnkeLilfsmadn 128
                 epgt+ld k ++i++sdF+nkeLilfs adn
  CCD25573.1 658 EPGTVLDPKISEIPISDFINKELILFSLADN 688
                 *****************************97 PP

>> DNA_gyraseB  DNA gyrase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   4.0   8.9e-30   3.2e-26       2     167 ..     247     413 ..     246     419 .. 0.81

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 8.9e-30
  DNA_gyraseB   2 lkdfveelnkdkkel......ikevlsvegekav........eevievevalqwtssysenilsFvNniatpeGGtHvdgfksaltktlneyakkkkl 85 
                  +k++ve + +++++            s++ +  +        +e++ev++a+   s+ s +++sFvN+iat+ GGtHv+++++++++++++++kkkk+
   CCD25573.1 247 FKNYVELYLNSSEKSrqldngE--DASIQSN--TppilyervNESWEVAFAV---SDISFQQISFVNSIATTTGGTHVNYITDQIVRKVSDILKKKKK 337
                  6788887777643332333220..2222222..1345666555559999999...77888**********************************9875 PP

  DNA_gyraseB  86 lkkkeekisgediregltavvsvkipepqFeGQTKekLgnsevksivekvvseeleafleenkeeakkilekaveaakarea 167
                       ++i++ +i++++++++++ i++p F++QTKe+++++      + ++s+ + +++++ ++ a+ki e + e++ ++++
   CCD25573.1 338 -----KNIKPFQIKNNMFIFINCLIQNPAFTSQTKEQMTTRVKDFGSKCLISDDFVNKIMK-TDFATKISEIVDENETNALK 413
                  .....48******************************************************.89999999988877777664 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   2.7e-16   9.7e-13       4     110 ..      58     203 ..      56     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 2.7e-16
                 HHHHHHHHHHHHHHHHH...HSTTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT........GTCSTTCH.....HCSTCHTSTSSSHHHHHH..... CS
   HATPase_c   4 krLrqiisnlvdNavkf...atkageieveikaseddlvisveDnGiGipkedlk........klfekfsq.....ddstkrggggtGlGlsiv..... 81 
                 ++L +i++++v Na+++    +++++i+v+i+ +e ++ i+v+++G+Gip e+++        ++f+++ +     d+++k++gg++G+G++++     
  CCD25573.1  58 PGLFKIFDEIVVNAADNkvrDPTMKRIDVNIR-PE-ENLIEVKNDGKGIPIEIHQkekihipeLIFGHLLTssnydDKEKKVTGGRNGYGAKLCnifst 154
                 579999999999999997655699999*****.44.9**************************999977777899899999*************55555 PP

                 ............HHHHHHTTTEEEE........EEETTTEEEEEEEEES CS
   HATPase_c  82 ............kklvelmgGeiwv........esepgrGttftftlpl 110
                             kk+v++++ +++          s+ +  t++ f+++l
  CCD25573.1 155 efiletadpilgKKYVQKWENNMNTchppkitpYSKGQSYTKVSFKPDL 203
                 5555555555555555545544444444433335555667778787776 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   9.7e-11   3.5e-07       2      88 ..     445     543 ..     444     560 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 9.7e-11
                 EEEESSHHHHHHHHHTHT...STEEEEEEESSSSEEEHS.TTEEEEE..ECTTTHHHHHH......HHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHT CS
      Toprim   2 lvivEgpsdaktiakalg...sgfqavtaslGhildlet.efkpvye..eiedkkkvlka......lkelakradeiilatDpDreGeaiawellevlk 88 
                 l++ Eg+s+   +   l    ++f+ +++++G++l++ + + +++++  ei+ +kk+++        +  ++r+ +++++tD D +G++i+ +++++l+
  CCD25573.1 445 LILTEGDSALSLAVAGLAvvgRDFYGCYPLRGKMLNVREaSADQILKnaEIQAIKKIMGLqhkkkyEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLE 543
                 889999997666666655666******************744444446655555555555433332566669999********************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       908  (0.0506442); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 9591.91
//
Query:       CCD25574.1  [L=190]
Description: hypothetical protein NDAI_0F02560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-50  169.0   0.0    6.7e-50  168.9   0.0    1.0  1  Ras        Ras family
      1e-22   80.6   0.0    1.4e-22   80.2   0.0    1.1  1  Roc        Ras of Complex, Roc, domain of DAPkinase
    2.4e-08   33.6   0.0    3.3e-08   33.2   0.0    1.1  1  Arf        ADP-ribosylation factor family
  ------ inclusion threshold ------
       0.15   11.5   0.0        0.2   11.1   0.0    1.2  1  SRPRB      Signal recognition particle receptor beta subunit
        0.2   11.4   0.0         16    5.2   0.0    2.3  2  PduV-EutP  Ethanolamine utilisation - propanediol utilisation


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9   0.0   1.9e-53   6.7e-50       1     159 [.       9     174 ..       9     177 .. 0.98

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 1.9e-53
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwveeik 98 
                 Klv+vGd+++GKtsll+ f+ ++F++ey++T+ +++y+++++vdg +v+l++wDTAGqee+++lr+ +y++a+ il+ +++++ es+en++ kw ee+ 
  CCD25574.1   9 KLVIVGDGCCGKTSLLYVFTLGEFPQEYHPTV-FENYVTDCRVDGIKVSLTLWDTAGQEEYERLRPFSYSNADIILVGFAVDDIESLENARtKWAEEVL 106
                 9*******************************.**********************************************************9******* PP

                 HHSTTTSEEEEEEETTTGGG.......G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHH CS
         Ras  99 rvaeenvpivLvGnKvDlee.......kravsteegeelakelg.lkfletSAktnenveeafeellre 159
                 r+++ + pi+LvG K Dl+e       k++v+ e+++++a+ +g  k+le+SA t  +v+++fe ++r+
  CCD25574.1 107 RYCP-DAPIILVGLKGDLREqgngtsnKKMVRPEDAQHVARLVGaKKYLECSALTGAGVDDVFELATRT 174
                 ****.5**************************************899*****************99886 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   3.8e-26   1.4e-22       1     119 [.       9     122 ..       9     123 .. 0.87

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 3.8e-26
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCH. CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenl. 95 
                 K+v+vGd++ GKtsll  f+ ++f +++++t+  +++t  + +++g+       kv+l +WDtaGqe+++ l+p+ +++a+++++ +     +s en+ 
  CCD25574.1   9 KLVIVGDGCCGKTSLLYVFTLGEFPQEYHPTVFENYVTD-C-RVDGI-------KVSLTLWDTAGQEEYERLRPFSYSNADIILVGFAvddIESLENAr 98 
                 99******************************9999875.4.56664.......589***************************966422355555542 PP

                 HHHHHHHHHHCSSS-EEEEEE-TT CS
         Roc  96 keWlkelkkvagkspvilvgnkiD 119
                  +W +e+ ++++++p+ilvg k D
  CCD25574.1  99 TKWAEEVLRYCPDAPIILVGLKGD 122
                 78******************9988 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   9.3e-12   3.3e-08      15     169 ..       8     169 ..       2     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 9.3e-12
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEE.EEE..EEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHCT CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTigfn.vee..leiknlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkalle 109
                  +++++G  + GKt +l+ ++l+e+ +   PT+  n v +  +   ++++t+wD  Gqe+  +l    +++ d ++    + d e le+a+++ ++ + 
  CCD25574.1   8 RKLVIVGDGCCGKTSLLYVFTLGEFPQeYHPTVFENyVTDcrVDGIKVSLTLWDTAGQEEYERLRPFSYSNADIILVGFAVDDIESLENARTKWAEEVL 106
                 589*********************966489**9887344422555677899***********999999******998888889999****999875443 PP

                 SGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGG...SS.SSSSEEEEEEBTTTTBTHHHHHH CS
         Arf 110 eeelkevallvlaNKqDlpealseeelrellglee...lk.gkrkleiqkcsavkgeglkegle 169
                  +   ++++++++ K Dl+e+ + +  ++++  e+   +       +  +csa++g g+++ +e
  CCD25574.1 107 -RYCPDAPIILVGLKGDLREQGNGTSNKKMVRPEDaqhVArLVGAKKYLECSALTGAGVDDVFE 169
                 .346799***********999887777777766663332222233455789*****99999876 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.6e-05       0.2       3      61 ..       7      67 ..       5      90 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.6e-05
                --EEEEE-STTSSHHHHHHHHHHSS---B---S..S-EEETTG...GGTT-SEEEETT-GC CS
       SRPRB  3 kpavllvGlsdsGKTslftrLttdsvkktvtSq..essaalkvksekgskltliDfPGhek 61
                ++++++vG   +GKTsl+   t +++ + +     e+ +++   +  + +ltl D  G+e+
  CCD25574.1  7 RRKLVIVGDGCCGKTSLLYVFTLGEFPQEYHPTvfENYVTDCRVDGIKVSLTLWDTAGQEE 67
                57899*******************7766665444477777666566778888999888875 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0    0.0045        16       2      19 ..       8      25 ..       7      51 .. 0.82
   2 ?    4.1   0.0      0.01        36     110     139 ..     140     169 ..     128     173 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0045
   PduV-EutP  2 kkilliGkvgsGKttLtq 19
                +k++++G   +GKt+L  
  CCD25574.1  8 RKLVIVGDGCCGKTSLLY 25
                6899***********975 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.01
   PduV-EutP 110 aveelLksaGaekifevsavekegieellk 139
                  +++  + +Ga+k  e sa++  g++++++
  CCD25574.1 140 DAQHVARLVGAKKYLECSALTGAGVDDVFE 169
                 567777899*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       393  (0.0219198); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1424.35
//
Query:       CCD25575.1  [L=1497]
Description: hypothetical protein NDAI_0F02570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-13   50.8   0.5    2.1e-13   50.8   0.5   11.1 10  NST1           Salt tolerance down-regulator


Domain annotation for each model (and alignments):
>> NST1  Salt tolerance down-regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   4.0    0.0078   1.4e+02      34      63 ..       6      35 ..       2      67 .. 0.40
   2 !    3.1  27.4    0.0051        92       4      64 ..      77     137 ..      74     145 .. 0.50
   3 !   50.8   0.5   1.1e-17   2.1e-13     112     170 ..     144     203 ..     141     211 .. 0.91
   4 ?   -9.2  17.2         1   1.8e+04      11      81 ..     231     299 ..     223     324 .. 0.39
   5 ?   -5.2  10.8         1   1.8e+04      11      90 ..     285     393 ..     275     410 .. 0.37
   6 ?   -9.1  10.7         1   1.8e+04       4      43 ..     545     584 ..     491     649 .. 0.51
   7 ?  -12.6  24.4         1   1.8e+04      11     124 ..     682     792 ..     662     800 .. 0.39
   8 ?  -24.8  47.8         1   1.8e+04      23     142 ..     749     869 ..     731     873 .. 0.32
   9 ?  -24.8  48.2         1   1.8e+04       9     112 ..     806     909 ..     796     980 .. 0.59
  10 ?   -6.6   9.8         1   1.8e+04      13      53 ..    1103    1143 ..    1061    1250 .. 0.58

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.0078
        NST1 34 kkkkkkkkknrsnsnnqneesstslstsks 63
                ++kkkk+k ++++ + +++++ ts++++ +
  CCD25575.1  6 RNKKKKSKSKNQQKKAHDHHHTTSTQNTDT 35
                222222222222222222222222222221 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.0051
        NST1   4 qseensqeqqqqqqdknevdeksqvesskrkkkkkkkkknrsnsnnqneesstslstsksv 64 
                 ++++  ++ ++ q+++++ ++ + +++++++kk kkk+kn++n+nn ne++s++ +++ks 
  CCD25575.1  77 NDNNIDTDPHHYQHQHQHQHQLQLHNTNNNNKKSKKKSKNNNNNNNSNEDTSSKNKNNKSS 137
                 3333444444444444444444444555555555566666666666666666655555533 PP

  == domain 3  score: 50.8 bits;  conditional E-value: 1.1e-17
        NST1 112 eFWlsLgEeERReLvkvEKeavLkKmKe.qqKhsCsCsvCGRkRvaiEEELEvlYDaYYe 170
                   W sL+ +E++++ ++EK+ v   +K  q  hsCsC+vCGR+ +a++ E+E +Y+  Y+
  CCD25575.1 144 SHWESLSPNEKKSILRIEKNEVFNVIKRyQNDHSCSCTVCGRRHLAMDQEMERIYNILYD 203
                 67************************973668***********************99997 PP

  == domain 4  score: -9.2 bits;  conditional E-value: 1
        NST1  11 eqqqqqqdknevdeksqvesskrkkkkkk.kkknrsnsnnqneesstslstsksvaittssarsvknnppsv 81 
                 +qqqqq ++++ + ++  ++ ++++ +++ +  ++ +s  q+e ++++  ++++ +  +++++  +++  ++
  CCD25575.1 231 QQQQQQLQSQQPSPHE--NEIHNQSIEHHeQPTHNEDSL-QDEVRHFKNFKKHQLQLLQEQQQHQQQQLDES 299
                 2222222222222222..222222222220223333333.33334433333333333333333333222222 PP

  == domain 5  score: -5.2 bits;  conditional E-value: 1
        NST1  11 eqqqqqqdknevdeks...qvesskrkkkkkk.....kkk.......................nrsnsnnqneesstslstsksvaittssarsvknnp 78 
                  q+qqq++++++de++   ++  +k  +  k        k                       + +++ ++ + +++ +  ++ v+ +t++++s + ++
  CCD25575.1 285 LQEQQQHQQQQLDESDnheEQLRTKYLEFTKAfvtshP-KiaqdyvekllqyptmkaitddliK-NTDISTTNGKNFVTALQNFVMENTTTTSSSSDPT 381
                 33444444444444430003222222222222555540.1444455555666544444444422.2222222333333333332333333333333333 PP

        NST1  79 psvssaalrsak 90 
                 +s+s++++ s++
  CCD25575.1 382 TSSSDSSSSSSN 393
                 333333333333 PP

  == domain 6  score: -9.1 bits;  conditional E-value: 1
        NST1   4 qseensqeqqqqqqdknevdeksqvesskrkkkkkkkkkn 43 
                 qse+++++++++++++ e de+s   ++ + +++++++++
  CCD25575.1 545 QSEYYEEQEEEDEEEEYERDEESYALHECNDRNHQHQHQH 584
                 2222222222222222222222222222222222222222 PP

  == domain 7  score: -12.6 bits;  conditional E-value: 1
        NST1  11 eqqqqqqdknevdeksqvesskrkkkkkkkkknrsnsnnqneesstslstsksvaittssarsvknnppsvssaalrsakkvskdrsiwntssqE.ere 108
                 e+++++++++e +++++ ++++++     ++ +r ++  +  + ++    +  ++++++++++ +n  +++++     +k  +k+++  +++ +E e+e
  CCD25575.1 682 EHEHEHENEEEDEDEDE-DEEEEEYDSGIDEEDRLEEGRKLIQIAITKLLQGRIMASYHEKQAENNRLKLLKELED--EKLKQKEKEEKKQKKREkEKE 777
                 22222222222222111.1111111111222233332222233333333333355555555555555555554433..333345554444444444666 PP

        NST1 109 klkeFWlsLgEeERRe 124
                 k ++  l   EeERR+
  CCD25575.1 778 KKRQLQLAK-EEERRK 792
                 656554443.455554 PP

  == domain 8  score: -24.8 bits;  conditional E-value: 1
        NST1  23 deksqvesskrkkkkkkkkknrsnsnnqneesstslstsksvaittssarsvknnppsvssaalrsakkvskdrsiwntssqEereklkeFWlsL..gE 119
                 +  ++ e +k k+k+k +kk+++ +++++++++ +l ++++   +  + +  k +++  +++  r+ ++ + ++   +++ +E + kl+e        E
  CCD25575.1 749 KLLKELEDEKLKQKEKEEKKQKKREKEKEKKRQLQLAKEEERRKKILELEGQKRENER-KEQERRELQRKKVEE-AKRKKDEEKKRKLQEQRRREeqQE 845
                 3223333333333333333333333333444444443333332222222222211111.112222222222222.222222234444444332220022 PP

        NST1 120 eERR.eLvkvEKeavLkKmKeqqK 142
                 + RR +  +  K  v kK Ke qK
  CCD25575.1 846 QQRRlKEEQRQKKEVEKKEKEEQK 869
                 222211112235555566666665 PP

  == domain 9  score: -24.8 bits;  conditional E-value: 1
        NST1   9 sqeqqqqqqdknevdeksqvesskrkkkkkkkkk.....nrsnsnnqneesstslstsksvaittssa.rsvknnppsvssaalrsakkvskdrsiwnt 101
                  +eq++++ ++++v      e++krkk ++kk+k      r ++++q+++ + ++ ++k+v  +++++ + +k++ ++  ++   + ++  k+ +  n+
  CCD25575.1 806 RKEQERRELQRKKV------EEAKRKKDEEKKRKlqeqrRREEQQEQQRRLKEEQRQKKEVEKKEKEEqKRLKEELQEKARKDEIERQRRLKQVEEANK 898
                 23333333333333......3333333333333322221444444444444444444444333332220222222222222223333444555556677 PP

        NST1 102 ssqEereklke 112
                 + +E ++klke
  CCD25575.1 899 KEKERQQKLKE 909
                 77777777776 PP

  == domain 10  score: -6.6 bits;  conditional E-value: 1
        NST1   13 qqqqqdknevdeksqvesskrkkkkkkkkknrsnsnnqnee 53  
                  qqqqq+++++ +  q++ ++   +   + +++s+s+++n  
  CCD25575.1 1103 QQQQQQQQSILNAMQTSGNDMSAQTYLQPQSHSQSQQHNPT 1143
                  22222222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4654  (0.259579); expected 358.6 (0.02)
Passed bias filter:                      900  (0.050198); expected 358.6 (0.02)
Passed Vit filter:                       676  (0.0377043); expected 17.9 (0.001)
Passed Fwd filter:                       173  (0.00964917); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 5.03u 0.46s 00:00:05.49 Elapsed: 00:00:00.96
# Mc/sec: 4692.71
//
Query:       CCD25576.1  [L=361]
Description: hypothetical protein NDAI_0F02580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-21   75.9   7.9    2.7e-21   75.9   7.9    4.4  4  DFRP_C     DRG Family Regulatory Proteins, Tma46
    0.00011   22.1  15.5    0.00023   21.1   4.7    3.0  3  zf_CCCH_4  Zinc finger domain
    0.00024   21.8   4.9    0.00024   21.8   4.9    3.9  4  Torus      Torus domain
     0.0011   18.8   0.2     0.0011   18.8   0.2    2.3  3  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
     0.0022   17.8   9.4      0.033   14.0   1.4    3.3  3  zf-CCCH_4  CCCH-type zinc finger
  ------ inclusion threshold ------
       0.13   12.8  13.9        1.4    9.5   3.7    2.8  2  zf-CCCH_2  RNA-binding, Nab2-type zinc finger
        1.4    9.2  11.3        1.6    9.0   0.7    3.3  3  zf-CCCH_3  Zinc-finger containing family


Domain annotation for each model (and alignments):
>> DFRP_C  DRG Family Regulatory Proteins, Tma46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   3.1       3.2   8.2e+03      39      50 ..       6      17 ..       3      47 .. 0.56
   2 ?   -1.1   3.4       1.1   2.8e+03      31      60 ..      49      75 ..      46      88 .. 0.68
   3 ?    4.5   0.5     0.019        48      63      88 ..     122     147 ..     101     148 .. 0.84
   4 !   75.9   7.9     1e-24   2.7e-21       1      88 [.     220     323 ..     220     324 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.2
      DFRP_C 39 eaeeekeekkkk 50
                ++++++e kkk+
  CCD25576.1  6 KQQQKQEGKKKD 17
                222222222222 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.1
      DFRP_C 31 KkkrlekkeaeeekeekkkkkeglsGrelf 60
                Kk+++++k+ ee++ +++ ++     r+lf
  CCD25576.1 49 KKEEMRQKKLEEKRLKEAAEA---EKRALF 75
                677777777777776666555...445555 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.019
      DFRP_C  63 npelaedddeeeeeeeeeawdleefr 88 
                 +++l++d  +e+e+++ ++wd e++r
  CCD25576.1 122 KKDLYQDVRNEKENDTMDNWDEEKLR 147
                 58999********9*9******9987 PP

  == domain 4  score: 75.9 bits;  conditional E-value: 1e-24
      DFRP_C   1 kitLEefiEteRakL....dk.klTpvtletFakWKkkrlekkeaeeekeekkkkkeglsGrelf..efnpelaedddeeeeeeeee............ 80 
                 kitLEefiEteR++L    dk klTp+++e+Fa WK+++++++ +ee+k   kkk    sGre++  ++ ++ ++++d+++++++++            
  CCD25576.1 220 KITLEEFIETERERLlgkiDKsKLTPISMENFAVWKQNHIIERINEENK--LKKKL---SGREIVqkMMLDNSYYANDNDDNNDNDNdntktnetsedk 313
                 7************999999777*************************99..66666...******9978888888888888877776789999999999 PP

      DFRP_C  81 ..awdleefr 88 
                   awdl+ef+
  CCD25576.1 314 gsAWDLTEFT 323
                 9999999987 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   4.7   9.2e-08   0.00023       1      19 []      94     112 ..      94     112 .. 0.98
   2 ?   -0.7   0.1      0.65   1.7e+03       1       5 [.     165     169 ..     165     170 .. 0.85
   3 !    7.8   0.4    0.0014       3.6      11      19 .]     186     194 ..     185     194 .. 0.93

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 9.2e-08
   zf_CCCH_4   1 CkfflqGtCkkGdkCrFaH 19 
                 C  f+ G+C+kG +C+F+H
  CCD25576.1  94 CVMFKMGNCNKGKNCKFSH 112
                 999**************** PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.65
   zf_CCCH_4   1 Ckffl 5  
                 Ckff+
  CCD25576.1 165 CKFFI 169
                 99996 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0014
   zf_CCCH_4  11 kGdkCrFaH 19 
                 +GdkC ++H
  CCD25576.1 186 NGDKCMYRH 194
                 8******** PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   4.9   9.2e-08   0.00024      31      98 ..      55     119 ..       3     129 .. 0.66
   2 !    8.6   0.4    0.0012         3      80      96 ..     182     199 ..     125     210 .. 0.57
   3 ?   -2.1   0.2       2.5   6.3e+03      23      47 ..     247     271 ..     237     298 .. 0.61
   4 ?   -2.0   0.3       2.3     6e+03      28      52 ..     286     306 ..     260     317 .. 0.54

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 9.2e-08
                 SS----S-THHHHS-----S----HHHH----HHHHSTT--B-HHHHHT--SSGGG-SSB-S---SS- CS
       Torus  31 ynkwsgeekekkkkskekaktrcnikkdsGytkadkekesyfClfFarGlCakGkkCeylHrlPteed 98 
                  +k    ek+ k+ ++++ +   n++ d+ +  a    ++++C++F  G C kGk+C++ H+l   + 
  CCD25576.1  55 QKKLE--EKRLKEAAEAEKRALFNPAMDQRIR-AGVDPKTVLCVMFKMGNCNKGKNCKFSHDLNVGRR 119
                 23333..2223333444445556888888665.5557899*********************9975554 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0012
                 --S.SGGG-SSB-S---S CS
       Torus  80 lCa.kGkkCeylHrlPte 96 
                 +C+ +G kC y H+lP+ 
  CCD25576.1 182 ICPnNGDKCMYRHSLPEG 199
                 46527***********85 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2.5
                 S-----TTSS----S-THHHHS--- CS
       Torus  23 egeeyNiWynkwsgeekekkkkske 47 
                 + e++ +W +++  e+ ++++k k+
  CCD25576.1 247 SMENFAVWKQNHIIERINEENKLKK 271
                 4467888888777554333333222 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.3
                 -TTSS----S-THHHHS-----S-- CS
       Torus  28 NiWynkwsgeekekkkkskekaktr 52 
                 N +y++  ++++++     + ++  
  CCD25576.1 286 NSYYANDNDDNNDN----DNDNTKT 306
                 44444444332222....2222222 PP

>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.2   4.5e-07    0.0011       2      26 ..      90     113 ..      89     114 .. 0.85
   2 ?   -2.9   0.2       2.9   7.4e+03       5       9 ..     164     168 ..     163     168 .. 0.67
   3 ?   -1.1   0.1      0.78     2e+03      17      26 ..     186     195 ..     185     196 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 4.5e-07
                 HCHCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   2 ktelCrffmrtGyCkyGdrCkFaHg 26 
                 kt+lC  f+  G C+ G +CkF+H+
  CCD25576.1  90 KTVLCVMFKM-GNCNKGKNCKFSHD 113
                 7777877777.*************6 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.9
                 CBCHH CS
     zf-CCCH   5 lCrff 9  
                  C+ff
  CCD25576.1 164 VCKFF 168
                 57776 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.78
                 TGGG-SSBSC CS
     zf-CCCH  17 yGdrCkFaHg 26 
                  Gd+C + H+
  CCD25576.1 186 NGDKCMYRHS 195
                 69***88886 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   1.4   1.3e-05     0.033       3      22 .]      94     113 ..      92     113 .. 0.85
   2 ?    1.5   0.0      0.11   2.7e+02       1       7 [.     163     169 ..     163     177 .. 0.78
   3 !    5.7   0.4     0.005        13      13      21 ..     186     194 ..     182     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
   zf-CCCH_4   3 CpyfakGsCrfGdnCrFsHd 22 
                 C  f  G+C  G nC+FsHd
  CCD25576.1  94 CVMFKMGNCNKGKNCKFSHD 113
                 5557789************9 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.11
   zf-CCCH_4   1 rlCpyfa 7  
                 ++C++f+
  CCD25576.1 163 KVCKFFI 169
                 69****7 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.005
   zf-CCCH_4  13 fGdnCrFsH 21 
                  Gd+C ++H
  CCD25576.1 186 NGDKCMYRH 194
                 6******** PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.7   0.00056       1.4       7      17 ..     101     112 ..     100     112 .. 0.97
   2 ?    7.9   2.6    0.0017       4.3       2      17 ..     165     194 ..     165     194 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00056
   zf-CCCH_2   7 nC.tnpkCpFaH 17 
                 nC ++++C+F+H
  CCD25576.1 101 NCnKGKNCKFSH 112
                 9*********** PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0017
   zf-CCCH_2   2 Crffpn............Ctnp..kCpFaH 17 
                 C+ff++            C+n   kC+++H
  CCD25576.1 165 CKFFIDavengkygwfwiCPNNgdKCMYRH 194
                 788888888888888888877777****** PP

>> zf-CCCH_3  Zinc-finger containing family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.5      0.38   9.7e+02      41      87 ..      11      57 ..       7      76 .. 0.68
   2 ?    9.0   0.7   0.00061       1.6       8      27 ..      94     113 ..      87     172 .. 0.82
   3 ?    5.8   0.2    0.0061        16       9      27 ..     177     195 ..     169     199 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.38
   zf-CCCH_3 41 qegrclrevckfrhmeidkkrkeipcywenqpaGcqklhcaflhekp 87
                qeg+  ++v k   m++++++++++ y ++  + ++ ++   +++k+
  CCD25576.1 11 QEGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSTSMDPKKEEMRQKK 57
                67777777777777888888888888887766666655555555444 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00061
   zf-CCCH_3   8 cyffyystctkGdscpfrhe 27 
                 c +f   +c+kG +c f h 
  CCD25576.1  94 CVMFKMGNCNKGKNCKFSHD 113
                 88888889999999999985 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.0061
   zf-CCCH_3   9 yffyystctkGdscpfrhe 27 
                 y +++   + Gd+c +rh+
  CCD25576.1 177 YGWFWICPNNGDKCMYRHS 195
                 778888889*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2336  (0.130292); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 2659.49
//
Query:       CCD25577.1  [L=713]
Description: hypothetical protein NDAI_0F02590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-31  107.1   0.1    2.2e-30  104.9   0.0    2.3  2  DUF2183   Uncharacterized conserved protein (DUF2183)


Domain annotation for each model (and alignments):
>> DUF2183  Uncharacterized conserved protein (DUF2183)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.29   5.2e+03       7      33 ..     104     131 ..      99     149 .. 0.68
   2 !  104.9   0.0   1.2e-34   2.2e-30       1      98 [.     364     459 ..     364     460 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.29
     DUF2183   7 spwnly.plleeFleenglPkgslllrd 33 
                 + wn   + l++F++ n + +g+   r+
  CCD25577.1 104 TTWNYQiQSLQTFIRFNVYTPGNQASRK 131
                 5566544778888888888877766655 PP

  == domain 2  score: 104.9 bits;  conditional E-value: 1.2e-34
     DUF2183   1 ffYvSaspwnlyplleeFleenglPkgslllrdls.ltlksllkekstaehKraeiekiletfperkfiliGDsgqkdpeiYaeiakefpeqikaiyIR 98 
                 ffYvS+sp +++p+l+eF++ n +P g+l+l+++s   l+sl++  s+a++K++ i++il++fp++kfil+GDsg+ d e+Y +ia +fpeqi+ iyIR
  CCD25577.1 364 FFYVSNSPLQMFPILQEFITGN-YPDGPLFLKQYSgNFLASLMT--SSANRKLQPITNILNDFPKKKFILVGDSGEMDFEAYISIAMTFPEQIAGIYIR 459
                 8********************9.************555666665..78**************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1034  (0.0576719); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 5376.58
//
Query:       CCD25578.1  [L=649]
Description: hypothetical protein NDAI_0F02600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-27   94.7   3.7      5e-27   94.3   3.7    1.2  1  Mem_trans  Membrane transport protein


Domain annotation for each model (and alignments):
>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   3.7   2.8e-31     5e-27       3     327 ..      13     564 ..      11     606 .. 0.92

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 2.8e-31
   Mem_trans   3 leavvplyvimllgYgsvkwvkiftpdqcsginrfVvlfavPllifhfisqnnpyemllrfiladvlvklivlillllgallskifkgslewtitlfsl 101
                 +++++++y+i+ +g++ +k+  i+t ++++ i+++V+ + +P+l f++i+ n   + + ++ ++   ++li+++++++ +l+ +++  +++w+  +++ 
  CCD25578.1  13 VKPIIKIYLIIGVGFLLAKS-AILTVEATRTISDIVLTVLLPCLAFNKIVANIEGNDIKSVGIICLTSLLIFGTGVFFAYLVRRLLWVPKQWNGGILAG 110
                 789*****************.****************************************************************************** PP

   Mem_trans 102 stlpNtlvlgipllkalyge.....ygvslmvqvvvlqciiiytlllflfeyrgaklliseefpdtaasivsikvdsdvvsldgrkpleteaeikedgk 195
                   +pN+  l+i+ l+ + +      +++   v++v+   i++   l+ lf+  g   li++ f+    ++++ +  +d+++++ +  l+ ++ ++ +g+
  CCD25578.1 111 GMFPNISDLPIAYLQTMDQGfifspDEGEKGVASVI---IFLAMFLVCLFN-LGGFRLIEMDFE---YKDEESQITQDEIHSSTMPSLQDSTTNNSNGS 202
                 *****************9999999955555555555...333333333333.444555656666...2466678899999******************* PP

   Mem_trans 196 lhvtvrksnasrsdivssstprpsnltnaeiyslq................................................................ 230
                  h  v + +++r++++s+ t+++s   +    s+q                                                                
  CCD25578.1 203 NHPVVCSLGDEREKQISNHTSNESSTLSKSASSIQqddldvnnntaigsskhepmnetndlgllngnskhmdgdeesvltqesstttttnnslhtiess 301
                 *****************9999998888888888889*************************************************************** PP

   Mem_trans 231 ................................................................................................... 230
                                                                                                                    
  CCD25578.1 302 issipsipdtipsdinnnnnnntmnnpnlsstrqrsqpiaftqnnssltqqltdssitsgtqlrpirsldmrslplqnmndlireysnvdqygnptpsi 400
                 *************************************************************************************************** PP

   Mem_trans 231 ................................................mtrlilimvlrklirnPntyssllglilslvsfkwnvimp........... 270
                                                                 + +  l ++ +k  + P  ++++l+l+++ +++ + ++ +           
  CCD25578.1 401 qdqtpiesqtmlqrvrssnltkiltsdatvsrndisesgtslpkwiqkFPLTPLLVFFLKNCLRPCSIAVILSLTIAFIPWVKALFVTtpttpiinqap 499
                 ************************************************88888889****************************99999********** PP

   Mem_trans 271 ......kiiqksisilgdaglpmalfslGlfLalqp.kkiacgnsvatfa.lavRlilgPlvmlv 327
                       +++++     g a++p  l+ lG++L + +  k+  g+ +++   +++R  ++P+++++
  CCD25578.1 500 dqqpalSFLMDFTAYVGAASVPFGLILLGATLGRLKlGKLYPGFWKSACVlVFLRQCIMPIFGVL 564
                 ********************************754314555555444433588888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1094  (0.0610185); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.41
# Mc/sec: 4786.77
//
Query:       CCD25579.1  [L=62]
Description: hypothetical protein NDAI_0F02610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-22   80.6   0.2    1.3e-22   80.4   0.2    1.0  1  Ribosomal_S7e  Ribosomal protein S7e


Domain annotation for each model (and alignments):
>> Ribosomal_S7e  Ribosomal protein S7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.2   7.3e-27   1.3e-22     126     183 ..       1      58 [.       1      59 [. 0.98

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 7.3e-27
                    HCTTS-EEEEEEEE-SSS-EEEEEEEESCTCCCHHHHHHHHHHHHHHHHS-BEEEEEE CS
  Ribosomal_S7e 126 lvyPseivGkrirvrldgskllkvfLdkkdqnnveekldtfsavykkLtgkdvvFefp 183
                    +v+P+eivGkr+r+ + g+k+ kv+Ld+kd +++++kl++f+avy+kLtgk++vFe+p
     CCD25579.1   1 MVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 58 
                    79******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       663  (0.0369792); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.23s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 508.92
//
Query:       CCD25580.1  [L=336]
Description: hypothetical protein NDAI_0F02620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-22   80.5   1.1    1.1e-22   80.5   1.1    2.0  2  ING              Inhibitor of growth proteins N-terminal hist
    3.8e-05   23.5   7.2    6.7e-05   22.7   7.2    1.4  1  PHD              PHD-finger
     0.0044   17.2   0.7      0.013   15.7   0.7    1.9  1  zf-HC5HC2H       PHD-like zinc-binding domain
  ------ inclusion threshold ------
      0.011   15.2   1.4      0.025   14.1   1.4    1.6  1  PHD_2            PHD-finger
       0.18   10.2   3.5       0.27    9.6   3.5    1.2  1  Glyco_transf_41  Glycosyl transferase family 41
       0.27    9.8  16.8       0.36    9.4  16.8    1.0  1  Hamartin         Hamartin protein
       0.73    8.4  10.9       0.88    8.1  10.9    1.1  1  SWI-SNF_Ssr4     Fungal domain of unknown function (DUF1750)
        3.3    7.2  21.8        4.8    6.7  21.8    1.2  1  DUF572           Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> ING  Inhibitor of growth proteins N-terminal histone-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   1.1   5.1e-26   1.1e-22       1     100 [.      10     118 ..      10     119 .. 0.98
   2 ?   -1.1   0.2       1.3   2.8e+03      33      45 ..     145     157 ..     139     198 .. 0.56

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 5.1e-26
                 HHHHHHTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.........TS..S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         ING   1 yLedyldsvenLPlelqrnltelreiDakvqellkeidskiekfl.........kngslqknekeeelsriqeelkeaqelldeKiqlaqqaldlvdkh 90 
                 +L+d+ d +e++P +++r+lt+l+eiDak+ + ++ ++s+i++fl         k+g +++++k ++l++i+e ++e++++l+eK+++++ +l+ ++k 
  CCD25580.1  10 GLNDIADVLEEFPVQTSRYLTLLHEIDAKCVHSMPLLNSNIDSFLrekkkkknaKSGVMKNETKGNKLRDINELFEELMPSLEEKMHVSSIMLESLKKM 108
                 59***************************************************9999****************************************** PP

                 HHHHHHCTXX CS
         ING  91 lrrLdqdlek 100
                 + r++ ++e+
  CCD25580.1 109 TTRMELAYEV 118
                 ******9986 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.3
                 HHHHHHHHHHHHH CS
         ING  33 llkeidskiekfl 45 
                 l+++i++k ++ +
  CCD25580.1 145 LMDKIENKTNSKS 157
                 3333333333333 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   7.2     3e-08   6.7e-05       1      51 [.     286     332 ..     286     333 .. 0.87

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 3e-08
                 SBTTTTSTTSTTSCEEEET..TTS.CEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkkksdeeeelvqCd..gCk.rwfHqkClkppleseekpegewlCekCke 51 
                 +C  C++   + +e+v Cd  +Ck +wfH  C++++      p+g+w+C++Ck+
  CCD25580.1 286 YC-YCNQ--IAYGEMVGCDgpDCKlEWFHLPCIGLK----TLPNGKWYCDECKK 332
                 68.9999..789*******555*978*********9....568899******97 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.7   5.9e-06     0.013      17      67 ..     265     316 ..     251     334 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.9e-06
  zf-HC5HC2H  17 keiemeeiedvekikkerkklkCylCkkkvGaciqCskkkCk.kafHvtCak 67 
                 + +++++i  + k +++ + l Cy+ +  +G +++C+ ++Ck + fH+ C  
  CCD25580.1 265 NATTTVSIAALPKYNENGEPLYCYCNQIAYGEMVGCDGPDCKlEWFHLPCIG 316
                 22468999999999*********9666779***********9568*****75 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   1.4   1.1e-05     0.025       4      36 .]     297     331 ..     295     331 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.1e-05
       PHD_2   4 llsCd..kCsva.VHasCYGvskesdgeeWlCrrCe 36 
                 ++ Cd   C++  +H  C G+++ + g +W+C+ C+
  CCD25580.1 297 MVGCDgpDCKLEwFHLPCIGLKTLPNG-KWYCDECK 331
                 67788888999659*************.*******5 PP

>> Glyco_transf_41  Glycosyl transferase family 41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.5   0.00012      0.27     126     297 ..     107     292 ..      98     295 .. 0.53

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00012
  Glyco_transf_41 126 kvtsPlelaeqyseklaympktffiGdhrqmfkhlkekvi..leekeeaek....akdnvavvnavdlkpllekaevkekvkevkvaekegkek 213
                      k+t+ +ela + + k   +p+t  +G  ++   hl++  +  +e+k+++++    ++++     a++ k+++ek    e+ +++++ +++ ++ 
       CCD25580.1 107 KMTTRMELAYEVALKNGEIPETLRLGVNNHPAMHLHNELMdkIENKTNSKSsqalKSESRREAMAANKKNVTEKGGSAERANNTNTNNSRADTP 200
                      689999999999**********999976666666666654113333333223344444445555556666666655555555544444433333 PP

  Glyco_transf_41 214 esekvev.vlkvvelptteavk.elikkgqlqtsv.ngvvvqnglatt.qteakaatGeevpkeivvtsrqqyglP....edaivycnfnql 297
                      ++++ +  + +  +++t++a   e  k+ + + ++    + +n+ a++  t++ ++ G +v+k+   t+ +   lP    +   +yc  nq+
       CCD25580.1 201 QNTNPRKrNNTSTNNDTSTANGgETRKRKRRANNItTTPNTTNTTAASsTTTTTTTGGGKVKKSNATTTVSIAALPkyneNGEPLYCYCNQI 292
                      32222220222222222222220222222222223123334444444414444555567888888888888888883332345688888886 PP

>> Hamartin  Hamartin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  16.8   0.00016      0.36     381     604 ..      22     250 ..      14     262 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00016
    Hamartin 381 Pakssrkl..ppslsesavvvalpassrksspprkdeksesskpdlskqeev.enekeleeslkskssvtlse..Lsdvikel...leaesedsvekee 471
                 P+++sr+l   ++   ++v++    +s+  s  r+++k++++k+ ++k+e+  ++ + ++e  ++ +    ++  +s+++ e    +++++e + e + 
  CCD25580.1  22 PVQTSRYLtlLHEIDAKCVHSMPLLNSNIDSFLREKKKKKNAKSGVMKNETKgNKLRDINELFEELMPSLEEKmhVSSIMLESlkkMTTRMELAYEVAL 120
                 888888887777778889998888888888888888888777777777777769999999998844444444433333333331112345555555555 PP

    Hamartin 472 eeaaisqelseiteekketlvsrggldspfsrtleslaksqrrkrlasalssesisdaegaatkkeaksskeaesslekekscsakqsftpieqkless 570
                 ++ +i + l   ++++     +   l+   + ++e+ ++s++ + l+s +  e +++ ++ +t+k  +++  +++++++++ +++++++ ++ ++++++
  CCD25580.1 121 KNGEIPETLRLGVNNH-----PAMHLHNELMDKIENKTNSKSSQALKSESRREAMAANKKNVTEKGGSAERANNTNTNNSRADTPQNTNPRKRNNTSTN 214
                 5555555555555554.....788899999999999999988889999999998888888888888788888888888888888888887777777766 PP

    Hamartin 571 k..dcpadeeesensleeklltpspckkaskqkvst 604
                 +  +++++ e+++ ++  ++ t++p ++++++ +st
  CCD25580.1 215 NdtSTANGGETRKRKRRANNITTTPNTTNTTAASST 250
                 644555555555555555555555544444222222 PP

>> SWI-SNF_Ssr4  Fungal domain of unknown function (DUF1750)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  10.9   0.00039      0.88     477     666 ..      54     246 ..      11     296 .. 0.38

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00039
  SWI-SNF_Ssr4 477 srqpsqegsqasgvlvgdsdvdmgntaaglldqfhtstglsststpvnnfptpqeqlsaaqsaaatpasanvaspapaqataqeaqsaesededvem 573
                    r+++++++++sgv+ +++  +     ++l +++    +l+++   ++ + ++ +++++    a   a  n + p++ +   +++ +++ ++e   m
    CCD25580.1  54 LREKKKKKNAKSGVMKNETKGNKLRDINELFEELM--PSLEEKMHVSSIMLESLKKMTTRMELAYEVALKNGEIPETLRLGVNNHPAMHLHNEL--M 146
                   46677778888999999985555455555555554..222222222222222223333333333333333444444444433222221111111..1 PP

  SWI-SNF_Ssr4 574 ggtee......keketetapdaatesgdwVvvpkggkspseaaakaaaeasaeagaaaaekaa.......kesaakateaagkeattpaakaasaaa 657
                   +  e+      +++ +++++ +a  ++   v +kgg++      ++a++++++++ a++ +++       +++++++++a+g e+ + + +a+  ++
    CCD25580.1 147 DKIENktnsksSQALKSESRREAMAANKKNVTEKGGSA------ERANNTNTNNSRADTPQNTnprkrnnTSTNNDTSTANGGETRKRKRRANNITT 237
                   11111000101111111112222222222222222222......22222222222222211111111111111122222222222222222222222 PP

  SWI-SNF_Ssr4 658 tpealetan 666
                   tp++++t+ 
    CCD25580.1 238 TPNTTNTTA 246
                   222222111 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  21.8    0.0022       4.8     123     328 ..      58     279 ..      45     283 .. 0.40

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0022
      DUF572 123 eeaedamkklEkrtkdskkemealesLeeLqelnqrqakvdfdanlelrkefreekkereeeeedeealkeki............slekikllpedeed 209
                 +++++a   + k+ ++ +k  +++e  eeL  + +++++v+   +le +k++ ++ +   e + ++ ++ e +            +    +l      d
  CCD25580.1  58 KKKKNAKSGVMKNETKGNKLRDINELFEELMPSLEEKMHVSS-IMLESLKKMTTRMELAYEVALKNGEIPETLrlgvnnhpamhlH---NEL-----MD 147
                 222444444444455556677888888888866677777765.6666666666666665555555555555553322222221110...111.....11 PP

      DUF572 210 ekkakllegkte..................slfasseesaksakkkptkk..........esskekkkeslekklskltkkkadsslvvrKkkkeeeks 280
                 + ++k+ +++++                  ++++ s+e           +            + ++++ ++++++s+++++++++++  rK+k++    
  CCD25580.1 148 KIENKTNSKSSQalksesrreamaankknvTEKGGSAE-----------RanntntnnsrADTPQNTNPRKRNNTSTNNDTSTANGGETRKRKRR---- 231
                 11111111111111111111122111111111111111...........0112222222233344444444444444444444455555555555.... PP

      DUF572 281 keskekteeeskeseeeskkeeetsaee.ekeekakkkssslsllvays 328
                  +++ +t+ ++++++++s+++++t++ + + ++++++++ s++ l +y+
  CCD25580.1 232 -ANNITTTPNTTNTTAASSTTTTTTTGGgKVKKSNATTTVSIAALPKYN 279
                 .122222233333333333333333333344444555566666667776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2552  (0.142339); expected 358.6 (0.02)
Passed bias filter:                      723  (0.0403257); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 2259.80
//
Query:       CCD25581.1  [L=144]
Description: hypothetical protein NDAI_0F02630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.2e-39  132.1   5.1    1.3e-38  131.7   5.1    1.2  1  DAD       DAD family
    0.00012   21.2   2.7    0.00014   21.0   2.7    1.0  1  PalH      PalH/RIM21
  ------ inclusion threshold ------
      0.012   14.4   0.6      0.014   14.2   0.6    1.1  1  DUF2207   Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> DAD  DAD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   5.1   2.2e-42   1.3e-38       2     109 .]      38     144 .]      37     144 .] 0.96

  Alignments for each domain:
  == domain 1  score: 131.7 bits;  conditional E-value: 2.2e-42
                 HHHHHHHHHHHHHHH..SCCHHHHHHHHHHHHHHHHHHHHHHHHT.--SSCHHHHHHHHHHHHHHHHHHHHHHHHH..S..--TT--TTHHHHHHHHHH CS
         DAD   2 keilkellesYlkkt..pkrlkliDafllflvlvgvlqfvYcvlv.gnfpfnaflsgfiatvgqfvLtvsLRlqlnaenkkefkeisperafadfvlas 97 
                 +e+++++++sY +++  +++lkliD f++flv+vg++qf++++l+ +n+pfnafl+gfi++vgqfvL++sLRlql     + f+ i ++raf++fvlas
  CCD25581.1  38 QEAYTTSMKSYWDQIasNNKLKLIDLFCAFLVVVGIIQFAFVCLIrDNYPFNAFLAGFIICVGQFVLLISLRLQLL----NPFEGIPKNRAFGEFVLAS 132
                 788999*******997789*************************999*****************************....589**************** PP

                 HHHHHHCCCH-X CS
         DAD  98 liLhfvvvnFig 109
                 liLhf++++Fi+
  CCD25581.1 133 LILHFICIHFIN 144
                 ***********8 PP

>> PalH  PalH/RIM21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   2.7   2.3e-08   0.00014     112     234 ..      20     143 ..      17     144 .] 0.87

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.3e-08
        PalH 112 ivltialakttkevfeeqyskgyqdaselekeivsstelkvlelisnlllnlaqvqivirlfsrqkekriiilvGlaliildtilsalllfsk..kfld 208
                  ++  a++  t+ ++++ ++  + +++++ ++i s+++lk ++l++ +l+ +  +q  +    r+++    +l+G+++++ + +l + l + +  + ++
  CCD25581.1  20 TSTASATSAKTQYIAKDFQEAYTTSMKSYWDQIASNNKLKLIDLFCAFLVVVGIIQFAFVCLIRDNYPFNAFLAGFIICVGQFVLLISLRL-QllNPFE 117
                 455566677777788888888899*************************************************************999999.5588889 PP

        PalH 209 alpalsylfelalvtlyaalviyYli 234
                  +p      e++l+ l + +++++ i
  CCD25581.1 118 GIPKNRAFGEFVLASLILHFICIHFI 143
                 99988888888888888888888776 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.6   2.4e-06     0.014     336     430 ..      16     107 ..       2     126 .. 0.44

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.4e-06
     DUF2207 336 lkeikkyakkskkkakkfkkalkkwksavkkkergyfdkkg....kkklkklsalglgliilglilillallllvlllvfllilllillliaiivlllf 430
                  k+  ++a+ +++k + + k +++       + + y+d+       k +  ++a++++++i+ +++++l+         f ++l+ +++ ++ +vll++
  CCD25581.1  16 NKAATSTASATSAKTQYIAKDFQEAYTT---SMKSYWDQIAsnnkLKLIDLFCAFLVVVGIIQFAFVCLIRDN----YPFNAFLAGFIICVGQFVLLIS 107
                 2333333333333444443333333333...444555554410003333444444444444444444444333....4444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1692  (0.0943722); expected 358.6 (0.02)
Passed bias filter:                      916  (0.0510904); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1061.24
//
Query:       CCD25582.1  [L=254]
Description: hypothetical protein NDAI_0F02640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-57  193.0   0.0    3.7e-57  192.5   0.0    1.3  1  Y_phosphatase2   Tyrosine phosphatase family
    2.6e-05   24.3   0.0    7.9e-05   22.7   0.0    1.7  1  Y_phosphatase3   Tyrosine phosphatase family
  ------ inclusion threshold ------
      0.032   14.0   0.0      0.065   13.1   0.0    1.6  1  DSPc             Dual specificity phosphatase, catalytic doma
      0.065   13.3   1.8        1.2    9.2   0.0    2.3  2  PTPlike_phytase  Inositol hexakisphosphate
       0.12   11.9   0.0       0.26   10.8   0.0    1.5  1  Y_phosphatase    Protein-tyrosine phosphatase


Domain annotation for each model (and alignments):
>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.5   0.0     1e-60   3.7e-57       1     163 [.      83     250 ..      83     252 .. 0.96

  Alignments for each domain:
  == domain 1  score: 192.5 bits;  conditional E-value: 1e-60
                     B---TT-EEEETTEEEESS--HHHHHHHHHCT-SEEEE-SSS---HHHHH.HHHHCT-EEEE-------GG....G----HHHHHHHHHHHH-GG CS
  Y_phosphatase2   1 lvpplnFsaveselyrssyprasnfsflksLkLktiislspeeesqdelq.fleeekiklyhiaiesnkee....lveiksdllkkalklllnke 90 
                     +vpplnF++ve+ lyrs++p+++nf+fl +L+Lktii+l +e e+qd+l  f+++++i+l+++ai+ + +e    +  ++++++ +al++++n++
      CCD25582.1  83 IVPPLNFCPVERFLYRSGQPSPVNFPFLLNLNLKTIIWLANE-EPQDTLLeFCDAHEIELQFAAINPDGGEddnpWDGLTEHSIINALQTIVNQD 176
                     69***************************************9.78888888***************998887888******************** PP

                     G-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHCC.C--HHHHHHHHC---HHHHHHHH.HTT--S CS
  Y_phosphatase2  91 nypvllhckrGkhrtglvigclRklqkWslasilnEyrrFsgs.kkrivdeefienfdselevekknkklkvlk 163
                     nyp+l++c +G+hrtg+vigclR++++W+las+++EyrrF+gs   ri+ e +ie+fd++l+  ++n+++++l 
      CCD25582.1 177 NYPLLVCCGMGRHRTGTVIGCLRRIMGWNLASVSEEYRRFTGSrGGRILVELLIEAFDTKLVRIERNTAPSWLL 250
                     ******************************************9789******************9999999975 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.2e-08   7.9e-05     108     157 ..     163     214 ..      92     224 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.2e-08
  Y_phosphatase3 108 kayrkvfealad.ee.pvlfHCtaGKDRTGvlaalllsllGvdeedivaDYl 157
                     +++ ++++++ + ++ p+l+ C  G+ RTG ++  l +++G + + + ++Y 
      CCD25582.1 163 HSIINALQTIVNqDNyPLLVCCGMGRHRTGTVIGCLRRIMGWNLASVSEEYR 214
                     5677788999995559***********************************6 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.8e-05     0.065      50     108 ..     151     214 ..      96     229 .. 0.60

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.8e-05
                 STTSCCGGGHHH..HHHHHHHH.HHTT-EEEEEESSSSSHHHHHHHHH..HHHHHTSCHHHHHH CS
        DSPc  50 ehetkiskylee..avefidka.kqkgkkvlVHCqaGisRSatliiaY..lmktknlslneaye 108
                  ++++  + l e  +++ ++++  q++   lV C +G  R++t+i +   +m  +  s++e y+
  CCD25582.1 151 GEDDNPWDGLTEhsIINALQTIvNQDNYPLLVCCGMGRHRTGTVIGCLrrIMGWNLASVSEEYR 214
                 4555555555431145666655699*******************97633366666666666555 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.4     0.027        96      33      71 ..      33      70 ..       3      87 .. 0.47
   2 ?    9.2   0.0   0.00034       1.2     116     153 ..     164     197 ..     156     200 .. 0.70

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.027
                     HHHHHHHHHHHHHHHT-SEEEEEEEHHHHHTT-CCG-EE CS
  PTPlike_phytase 33 gisaeeleklearlkeevlaeakksegrvlvhdeteegk 71
                     ++++ ++ ++e+++ ee  ++ ++ ++++++++ete+gk
       CCD25582.1 33 QDNRGNICAVETEVEEE-EEYEEEDDNNIYINEETESGK 70
                     22333333333333332.223334444555555555554 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00034
                      HHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHH CS
  PTPlike_phytase 116 edfdalvsilkeapektalvfnCqmGrgRTTtamviat 153
                      + ++al  i+++   + +l++ C mGr RT t++  ++
       CCD25582.1 164 SIINALQTIVNQD--NYPLLVCCGMGRHRTGTVI--GC 197
                      5555555555555..5789999*******98754..44 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.3e-05      0.26     157     189 ..     164     196 ..     151     205 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.3e-05
                    HHHHHHHHHHSTTSS-EEEECSSSSHHHHHHHH CS
  Y_phosphatase 157 klirkvekskeaksgpvvVhCsaGvgRtgtfva 189
                    ++i+ +++  ++++ p++V C  G  Rtgt++ 
     CCD25582.1 164 SIINALQTIVNQDNYPLLVCCGMGRHRTGTVIG 196
                    44555555556669****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       752  (0.0419432); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1957.31
//
Query:       CCD25583.1  [L=246]
Description: hypothetical protein NDAI_0F02650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-05   25.4   0.0      0.041   13.9   0.0    2.9  3  ApoO      Apolipoprotein O


Domain annotation for each model (and alignments):
>> ApoO  Apolipoprotein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00015       2.8      42      91 ..      93     143 ..      60     145 .. 0.70
   2 !   13.9   0.0   2.3e-06     0.041      88     119 ..     161     192 ..     153     202 .. 0.86
   3 ?   -0.9   0.0     0.083   1.5e+03      14      30 ..     227     243 ..     216     245 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00015
        ApoO  42 kskvetaeqsvtdtiasLkepp.edllPrlgyilvagLaGsilarrrsilk 91 
                 ksk++ ++  ++ +i +  e++  +l+P+++  l a+ aG+i++++ ++ +
  CCD25583.1  93 KSKYYLTKDYLSYNIFNNEEENkNQLVPGSVLALEAAFAGMIVSNKKNWGF 143
                 4455555555544443333333599*******************9988765 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 2.3e-06
        ApoO  88 silkRvlyPlalgglaaslfyPqtakntgdll 119
                 s++ R++ P +l+g ++s+++P+t kn ++ +
  CCD25583.1 161 SLPSRLILPWVLAGYTLSVCIPVTWKNFKKSI 192
                 6899********************99998655 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.083
        ApoO  14 drLeegvrslRkslepy 30 
                 + L++gvr++R +l ++
  CCD25583.1 227 KFLQTGVRHTRMYLFEK 243
                 68999******999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1896.60
//
Query:       CCD25584.1  [L=710]
Description: hypothetical protein NDAI_0F02660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-90  304.2  30.5    1.4e-90  303.9  30.5    1.1  1  Aa_trans  Transmembrane amino acid transporter protein
  ------ inclusion threshold ------
          2    9.0   5.0       0.34   11.4   0.4    2.0  2  YuzL      YuzL-like protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.9  30.5   1.6e-94   1.4e-90       2     408 ..     292     707 ..     291     708 .. 0.97

  Alignments for each domain:
  == domain 1  score: 303.9 bits;  conditional E-value: 1.6e-94
    Aa_trans   2 tssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvs 100
                 t+s+ +++l l+k+++G+G+L+LP Af+++Gl++++i+l++++++s++++++L+k++       +++s+gd+g +l+Gp++k+ii ++++++++G++ +
  CCD25584.1 292 TTSTAKTFLLLLKSFMGTGILFLPAAFHNGGLLFSIIMLFFFGIYSYWCYYILTKAKVA----TGQSSFGDIGLKLYGPSMKFIILFSLVLTQLGFSAA 386
                 78999****************************************************74....69********************************** PP

    Aa_trans 101 yliligdllpaifesffdtlllsnvyfilisaliiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkasklkglflaig 199
                 y+i+++++l+a+ ++ff   +++  y++  + ++     l ++ skLs  Sl+a+v+++++++i+ ++ +  ++lel  +   +v + ++  +++++ig
  CCD25584.1 387 YMIFTAKNLNAFCQNFFLLEDINFIYLMGFQLFFSSHYHLSRKVSKLSLPSLIANVFVMTGLAIVLFFLVRHLFLELHLHPAAGVIPGLNSDRWTMFIG 485
                 ****************99999999999999999999999************************************************************ PP

    Aa_trans 200 iivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfplqlhplrqvv 298
                 +++FAf+g+ ++++iq+++k+p+kf+    vl ++ i+at+l+i ++ +GYl +G++++ +illnlp+ si+ + ++l++ l+++ls+plq++p+++++
  CCD25584.1 486 TAIFAFEGIGLIIPIQDSMKNPEKFP---LVLGFVLIAATFLFITIASIGYLSYGSSTEVVILLNLPQDSIFVISIQLFYSLAIMLSTPLQMFPAIKII 581
                 **************************...8********************************************************************* PP

    Aa_trans 299 enllikk..............eavagasekeapkskllrlvirlllvvityliA.lsvpslakvlslvGatsstplsfilPalfhlkliktekkslekl 382
                 en+++++               + + +s+k ++k+k+l++++r+++v ++++ A   v +l+kv+sl+G+++++pl++i+P+l+hl+  + +  + ++ 
  CCD25584.1 582 ENKVFPRftkiyvegdgdrcdVEFRLNSGKANWKVKWLKNFVRSIIVSFVIIFAyYEVDNLDKVVSLIGSFACIPLVYIYPPLLHLRSRSRSQSPSGDP 680
                 ********************99999*****************************889*********************************999999876 PP

    Aa_trans 383 vkkk.ildlicivlglllvfyglavli 408
                  k+k +ld i +v+g + ++y++++++
  CCD25584.1 681 SKWKlVLDHILVVFGGISMIYTSYQSM 707
                 6655379****************9976 PP

>> YuzL  YuzL-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   3.8e-05      0.34       5      16 ..     100     111 ..      99     112 .. 0.96
   2 ?   -1.9   0.4      0.55   4.9e+03       6      25 ..     276     295 ..     276     297 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 3.8e-05
        YuzL   5 dpSkaglSaasV 16 
                 dpSk+g+S++sV
  CCD25584.1 100 DPSKRGVSSPSV 111
                 9**********9 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.55
        YuzL   6 pSkaglSaasVkGqAGpTve 25 
                 pS++ lS a +    G+T +
  CCD25584.1 276 PSQSRLSKAAIHSARGTTST 295
                 78888998888888899865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       686  (0.038262); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 5078.32
//
Query:       CCD25585.1  [L=1294]
Description: hypothetical protein NDAI_0F02670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.7e-124  414.1   3.4   9.9e-124  413.5   3.4    1.3  1  DNA_pol_B       DNA polymerase family B
    2.5e-65  219.7   1.6    4.4e-65  218.9   1.6    1.4  1  zf-DNA_Pol      DNA Polymerase alpha zinc finger
    6.5e-43  147.2   0.0    1.6e-42  145.9   0.0    1.7  1  DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain


Domain annotation for each model (and alignments):
>> DNA_pol_B  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.5   3.4  1.7e-127  9.9e-124       2     459 .]     610    1057 ..     609    1057 .. 0.93

  Alignments for each domain:
  == domain 1  score: 413.5 bits;  conditional E-value: 1.7e-127
                  -HHHHHHS-HHHHHHHHHHHHHHHTTBE-B-----.--SS.....................-S----BE----EEESS-EEEEEETTHHHHHHHHTT CS
   DNA_pol_B    2 plsrvledgqqirveslLlrlakeegfilpdrtekkgkeee....................gYqGatVlePkkglydkpvlvlDFaSLYPsiiqahN 78  
                   ++++l ++++ r+e++Ll+++ ++gfi+pd++ +k ++++                    +YqG++V+eP+kgl+++++lv+DF+SLYPsiiq++N
  CCD25585.1  610 AWAQTLGGTRAGRNEYILLHEFTRNGFIVPDKETNKMRTQRqrkqmgdqqdgdapvsskkaKYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEYN 706 
                  688999************************9555544444456667788889999***9977*********************************** PP

                  -STTTCE-HCCHCCT--BTT...TEEE-TCC-EEE-TTS---HHHHHHHHHHHHHHHHHHHHHCS--HHHHHHHHHHHHHHHHHHHHHHHHHTSTTS CS
   DNA_pol_B   79 lcyttlvaseeeakeleaedeyleveveprlvefvkksvregllpklLkdllakRkaikkelkeekdefekalldkqQlalKvtaNsvYGftGvans 175 
                  +c+tt+ +++++ +el++                 +++ ++g+lp+lL++l+++R+++kk +k+e+d+++k ++d++Q+alK+taNs+YG++G+ ns
  CCD25585.1  707 ICFTTVERNQDDIDELPEV---------------PSSDIAQGVLPRLLANLVDRRREVKKIMKTETDPHKKIQCDIRQQALKLTANSMYGCLGYVNS 788 
                  **************99963...............247899********************************************************* PP

                  TT--HHHHHHHHHHHHHHHHHHHHHHHHT...SSGGGT-SS.....T-EEEEEBSSEEEEE-S-SSHHHHHHHHHHHHHHHHT.TSTTT--EEEEEE CS
   DNA_pol_B  176 rlpclalAasvTtiGRemLektkelvekkaellskllalpeeaeeeklkviYGDTDSvfielkvkdveellkigkelaeevseklfkkplklefekv 272 
                  r+++++lA +vT++GRe+L++t++l e++                 +l v+YGDTDSv+i+++++++++++kig+++++ v+e ++k  l++++++v
  CCD25585.1  789 RFYAKPLAMLVTNKGREILMNTRQLAESM-----------------NLLVVYGDTDSVMIDTGCDTYADAIKIGNDFKKLVNE-RYKL-LEIDIDNV 866 
                  ***************************99.................9************************************.9998.******** PP

                  EEEEEEEETTEEEEEEEEESSTTS...EEEEESSGGGSTTS-HHHHHHHHHHHHHHSSS....S-HHHHHHHHHHHHHHHHHHHHTT-S-GGGG-EE CS
   DNA_pol_B  273 ykkllLisKKkYaglkvektskan...klliKGvdlvRrdncklvkevikkvlelllkdeteersleeglealksilkdvleeleenkvplekfvls 366 
                  +k+llL++KKkYa+l v+ +++ +    l++KG+d+ Rr+ c+l+k+v+++vl+++l+d    +++e +l+++  +l+d+++++e+n++ ++k+ ++
  CCD25585.1  867 FKRLLLHAKKKYAALNVTLNKDGSerlTLEVKGLDMKRREFCPLSKDVSTHVLNTILSD----KDPEAALQEIYGYLEDIRNKMENNEIRVDKYKIN 959 
                  ****************9988877776569******************************....********************************** PP

                  EEESS.CCCS.SGCCSHHHHHHHHHHHHCSS---TTCEEEEEEBETSS.......SS-GGGTEEEH.HHHHH.CCSEB-HHHHHH.TTHHHHHHHHT CS
   DNA_pol_B  367 kelskepeny.ksknlphlevakrlkkrneeapevgdrisYvivekkkev..kkknllaseraedp.eyvle.knlpidieyYls.qllkevarlle 457 
                   +lsk+p++y   kn+p ++va +++k  ++++++g +i++vi++ k+e+  + ++l+ ++ra    e++ + ++l  d+eyYl+ q++++v+rlle
  CCD25585.1  960 MKLSKDPQAYpGGKNMPAVQVALKMRKA-GRVVKAGSVITFVITKGKQEEgkEDEKLSPADRAFALnEVMVKsNKLIPDAEYYLEkQIFSPVERLLE 1055
                  *************************999.89***************99887666677778888877665555277999*****************99 PP

                  TS CS
   DNA_pol_B  458 ai 459 
                  +i
  CCD25585.1 1056 RI 1057
                  75 PP

>> zf-DNA_Pol  DNA Polymerase alpha zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.9   1.6   7.4e-69   4.4e-65       2     185 .]    1097    1290 ..    1096    1290 .. 0.97

  Alignments for each domain:
  == domain 1  score: 218.9 bits;  conditional E-value: 7.4e-69
                  XXX-TTTTTT---EEEE-TTT--EEEE-SSS--S.SEEEETTEEEET..TT--B--HHHHHHHHHHHHHHHHHHHHH--EEES-TTT--EES---SS CS
  zf-DNA_Pol    2 qisdeerFkdceplelrCpsCkeefefegvfesaeeekvtasglrCsnesCkaslstaslvnqlelairkhiskYYegwlvCddptCgnrTrqlsvy 98  
                  +isd erFkd++ l l+Cp+C++ef+f g++ s+ ++ ++++gl+C+n  C++ +st++l++qle++ir+his YY+gwl+Cdd tCgn Trq+sv 
  CCD25585.1 1097 TISDMERFKDATTLDLHCPNCSSEFPFGGIVPSN-HYLMCYNGLQCKN--CEKIFSTIQLTSQLESSIRSHISLYYAGWLICDDITCGNVTRQISVF 1190
                  699*******************************.9**********95..*********************************************** PP

                  TTB-S..T---BEEESS-HHHHHHHHHHHHHHT-HHHHHTT-S--S............--HHHHHHHHHHTHHHHHHHHHHHHHHHHC-XXXXXXXX CS
  zf-DNA_Pol   99 gkrCla.gCkgrmrkeysekqLYnQLlYfeslfdvekalkklkkee............ekkekvealaeknrerlktlkevvdkyleksgyrwVdlk 182 
                  gkrCl+ gC+g+mr++y++kqLYnQLlYf+slfd ek +++  k+              ++++++al+e+nre ++  + vv+kyl+++g+r+Vd++
  CCD25585.1 1191 GKRCLNdGCTGVMRYRYTDKQLYNQLLYFDSLFDREKNKNQEIKPLyhegdpdfptekLNDSSIRALSEQNRELFEVNRGVVQKYLSDCGRRYVDMG 1287
                  ****9956******************************99999888999*******99999************************************ PP

                  XXX CS
  zf-DNA_Pol  183 sLF 185 
                  s+F
  CCD25585.1 1288 SIF 1290
                  **9 PP

>> DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.9   0.0   2.6e-46   1.6e-42       7     337 .]     207     545 ..     202     545 .. 0.93

  Alignments for each domain:
  == domain 1  score: 145.9 bits;  conditional E-value: 2.6e-46
                     EEEEEEEE---EEEEEESSCGGHHHHHHHHHHHCCTTCCCEEEEEEEECCCCEECCTSSCCHHC....EEEEEESSTCHHHHHHHHHHH...CCC CS
  DNA_pol_B_exo1   7 svcvnvfgfkpyfYceapdgkeleevkeelkelyeelskkvtkivkvelvlkkslygyekkpvp....ylkvsvsnpnelkkirkelsp...lee 94 
                     s +v++ g ++ +Y+ +++++++ee++ee+  l  e++    ++++++ +  k+ y++e +++p    ylkv ++  ++ ++++ +  p   +++
      CCD25585.1 207 SAMVQINGLCRELYFLPRENNTPEEIHEEIVPLLLEKY----GLDNIRAKPEKKKYAFELPDIPheanYLKVLMPFNTPKSSNDLIP-PdlsSDT 296
                     789********************999999999998887....5799*****************99*99***9999888888877655.347799* PP

                     CCCCCSSS--HHHHHHHHCTS-TTCEEEEETEEEEGCC--C-.SEEEEEETTTSCEETTTCC.S-EEEEEEEEEETEETTSEETTTT..--EEEE CS
  DNA_pol_B_exo1  95 ivdvyeydvdylerflidnkivgfgwysvkkylvraegkisncdveidcdvddliakpkese.pplrvlsFDIeckskkgkfpdaensedpiiqI 188
                     +++v++++++++e f+++nki+g++w+++k+ +++a +++s+c++e+ +++++++   + ++ p+l+ +s ++++      +++++ ++++i+ I
      CCD25585.1 297 FSHVFGGNTNIFEAFVVQNKIMGPCWLEIKDGDFTALQNASHCSIEVAVNKPQNVIPLDIKTiPDLKSISLSLQT------MMNPKANKQEIVSI 385
                     ********************************************************999999*************......88888889****** PP

                     EEEE.CCTC.SS.SEE.....EEEEECCCTSS----EE--SSTCSTTE.EEEEESSHHHHHHHHHHHHHHH--SEEEESSTTTTHHHHHHHHHHH CS
  DNA_pol_B_exo1 189 scvl.dglgekepear.....klftlrecaseeeedfeltpkpeypgv.kvlefdsEkelLqaflefikqydPdvitgYNidnFDlpYilnRake 276
                      + +   ++ ++p ++      ++tl    + +++ + l+  ++++   +   f++Ek+lLq+f+ ++k  d dv++g+ +d+  l ++ +R+ +
      CCD25585.1 386 TMSIfNRISLDSPIPEglkpdSIITLLRPPQGTSFPLGLAALAKQKLNgNLRLFNDEKTLLQCFCALMKVNDADVLIGHRLDSVYLDVLVHRIYD 480
                     ****777774444444668889********9******999999888888********************************************** PP

                     CCTCCHCG.SCCS..CTCEECCCCESEEEEEECEEEETTSEEEEHHHHHHHHSSSS..G-SHHHH CS
  DNA_pol_B_exo1 277 lykvklsklgrln..kggrskvseigfskqarekvkisgrihlDlyrvvkrklklp..sYkLnav 337
                     l+++++s++gr +  ++++ +++ ++ +++ +     +gr+ +D+ + + ++l+ +  s++L+++
      CCD25585.1 481 LKIPTFSTIGRRSkkTWPERFGKGTSGMNHFYIRDLFAGRLLCDIGNEMGQSLTPKcqSWDLSEM 545
                     ************99***************************************99999****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.87u 0.27s 00:00:01.14 Elapsed: 00:00:00.46
# Mc/sec: 8382.09
//
Query:       CCD25586.1  [L=587]
Description: hypothetical protein NDAI_0F02680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1872  (0.104412); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 3844.85
//
Query:       CCD25587.1  [L=134]
Description: hypothetical protein NDAI_0F02690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.81    9.7   5.9       0.91    9.5   5.9    1.1  1  Neur_chan_memb  Neurotransmitter-gated ion-channel transmembr


Domain annotation for each model (and alignments):
>> Neur_chan_memb  Neurotransmitter-gated ion-channel transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   5.9   5.1e-05      0.91     120     199 ..      41     122 ..       3     132 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 5.1e-05
                     --.-------------------....-------------------SS---TTGGG--.....-----TTTTTHHHHHHHHHHHH CS
  Neur_chan_memb 120 kklssgasseaeelilskskse....skkaklseeqgsekastckckckegeeaspstqlskeelspelkkavegvkyiadhlr 199
                     k+ +  ++ +++++i + + +     ++k ++ + ++ ++++++++ c++++++   +q+ ++ ls++ k   ++v++ia+h +
      CCD25587.1  41 KSHTRFNTPKRPQFINNTKPHRnfkqFSKRRNYQHSNRNQSNQHNTCCRDPQNK--LKQNCSNALSKAPKPGAHEVQHIAEHEQ 122
                     221222222444444444333234325555666666666666666666655555..4555668899999999********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1060  (0.0591221); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1059.27
//
Query:       CCD25588.1  [L=1241]
Description: hypothetical protein NDAI_0F02700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-75  254.2   4.3    4.1e-75  253.1   4.3    1.6  1  Syja_N         SacI homology domain
    1.1e-13   51.3   0.0    1.7e-13   50.7   0.0    1.3  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
       0.12   12.4   3.2       0.36   10.9   3.2    1.8  1  Remorin_N      Remorin, N-terminal region


Domain annotation for each model (and alignments):
>> Syja_N  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.1   4.3   6.8e-79   4.1e-75       1     319 [.      75     410 ..      75     411 .. 0.84

  Alignments for each domain:
  == domain 1  score: 253.1 bits;  conditional E-value: 6.8e-79
      Syja_N   1 ygilGlirllsgsyllvitkreevgt.lkgkkeiykitevellplsseeeaekalkslkakt......ekkkeeke...........leekllkllekl 81 
                 +g +Gli++++  ++ +it+++++++ ++++ +i ki +v++++l++++ +  +l  l   +      +      +           ++++ ++ l k 
  CCD25588.1  75 HGFIGLIEINNFIFIGLITGSSKLAQpIPNE-TINKILSVDFVCLNDSTWDFMELGALDYYDhslsssS------SssqidkdigdpQQRHPCHDL-KK 165
                 799*******99**************88776.*************977777666666555544443331......333445566666666677788.55 PP

      Syja_N  82 fessgsfYFsydlDltrslqrqleks......sesskslplweraderFvWNrhllkpli........ea....eldswllpviqGfveqsklklsksq 162
                 + s+gsfY+s ++Dlt +lq+++ ++       +++k++ + ++++e F+WN++++++++        ++    + + +l++vi+Gf++++        
  CCD25588.1 166 LLSNGSFYYSSNFDLTTTLQNRYLNNktkggiGDEDKDNDTNSNMNEAFMWNSFMMNEIMnyknhlnvNHkkilNNEGFLTSVIRGFAKTFISY----- 259
                 559*********************99******5555555567899*************776765555511678889************443332..... PP

      Syja_N 163 kekekkevtltlisRrsrkraGtRylrRGiddeGnvANfvEtEqilevessekeskilSfvqiRGSiPlfWsqeptlky.kpkirierseeenleafkk 260
                    ++ ++ lt+is++s+kraGtR+++RGidd+Gnv+NfvEtE i++     ++++++Sf+qiRGSiP+fW+q+++l   + ki+i+rs +++++ f++
  CCD25588.1 260 --INHLKIALTIISKQSWKRAGTRFNSRGIDDDGNVSNFVETEFIMY-----SSQYCYSFTQIRGSIPIFWEQDTSLINnSRKIQITRSVDATQPIFDN 351
                 ..456789***************************************.....5679*******************988789****************** PP

      Syja_N 261 HfekllkrYgkvvvvnLl.ekkgrEkkLgeayekavkklnklekekkklkyveFDfhkec 319
                 Hf +l+++Yg+v+++nLl ++k++E kL++ay++++ ++n+l + ++++ ++eF+fhke+
  CCD25588.1 352 HFIQLIEKYGPVHIINLLsKTKSNELKLSKAYKHHLINSNEL-RLDENVFLTEFNFHKET 410
                 ******************666799***************973.4568***********97 PP

>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   2.8e-17   1.7e-13       1     233 []     609     893 ..     609     893 .. 0.92

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 2.8e-17
                    EEEEESTGCHHHHTHHHHHHHHHHHHHHC......TT..SEEEEEEEBSCTCHHHHHHHHHTTCEEEEECCH........................ CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................ RF
  Exo_endo_phos   1 ltwNvngqaspalgssrrsdrladlltay......da..DvlgLQEvdddelsriplllalggflgasstsp........................ 64 
                    +t+Nvng  ++    s+ s ++ ++l  +      ++   vlg+QE       +i+l++  g  l+a++t++                        
     CCD25588.1 609 GTFNVNG--MS----SNKSLDISNWL--FpigdkfKPdmVVLGFQE-------VIELTA--GSILNADYTKSsfwettvkdclnqyvddenekyil 687
                    6******..65....456999*****..544655533668******.......******..*********************************** PP

                    ................................ECSSSTTSSEEEEEECSTE..EEEEEEEEEETSSSSGCEEEEEEEEEEEEEEECCCHHGHHHHH CS
                    ................................xxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  65 ................................tgggggggnggavlsrfpl..tslfrrtfiefndlvaalrreplaakleqlniashrdhdlvrd 126
                                                    tg+ g +gn+gav++rf    ts+                                        
     CCD25588.1 688 lrveqmssllilffvksdkinqikkvegstkkTGFRGMTGNKGAVAIRFEYgnTSF---------------------------------------- 743
                    ********************************************************........................................ PP

                    HHHHHHHHHHHHHHHHTTSEEEE.........................................EEE-SSSTSGGGBSCGHHHHHHCTTTHHSSCE CS
                    xxxxxxxxxxxxxxxxxxxxxxx.........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 127 lqllalllqvealnadrgapviv.........................................aGDfNarpsdddsrvlrtrglalapapvglyl 181
                                        ++v                                         +GD+N+                          
     CCD25588.1 744 --------------------CFVnvhlsagvnniedrrndyfsimknitfansrkisnhssifwLGDLNY-------------------------- 793
                    ....................99999999999999999999999999999999999999999999******.......................... PP

                    SCETTTTTTTTTTTEB-B.........................................................................EEEEE CS
                    xxxxxxxxxxxxxxxxxx.........................................................................xxxxx RF
  Exo_endo_phos 182 lgggptptyvtraggsrl.........................................................................Drila 204
                                    r+                                                                         Dri +
     CCD25588.1 794 ----------------RItlsneqvrkelytendgyierlleydqltkeinsnvifqgfseptvqfrptykydfgtnnydssekartpswtDRIVY 873
                    ................9999999999999******************************************************************* PP

                    ECHHHCCEEEEEEECCHHEECTSSCSSSB CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 205 spalalfrsgvlppplalvrrealtlSDH 233
                    +        g ++ pla++ +  l++SDH
     CCD25588.1 874 K--------GDNLSPLAYSAS-QLMISDH 893
                    *........566666666665.6778888 PP

>> Remorin_N  Remorin, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.2   6.1e-05      0.36      11      40 ..    1035    1068 ..    1028    1076 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.1e-05
   Remorin_N   11 iPpPep...eeKp..DdSKAlavVEkvaesae.eKk 40  
                  iPpP+    +  +  D SK +a+VE+ +++ + eK+
  CCD25588.1 1035 IPPPPRvqvK--KdiDVSKNIATVENSKKEFKeEKE 1068
                  7777667533..446***********6666552553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1053  (0.0587317); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 8502.59
//
Query:       CCD25589.1  [L=279]
Description: hypothetical protein NDAI_0F02710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-17   64.4   0.0    3.3e-17   62.8   0.0    1.7  1  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   1.8e-21   3.3e-17       1     191 [.       6     227 ..       6     230 .. 0.75

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 1.8e-21
                 EEEEE---BTT.B--.........TT----B-HHHHHHHHHHHHHHTT.....S---EEEE-SSHHHHHHHHHHHHCTT--EEE-GGGS----GGGTT- CS
  His_Phos_1   1 lyLvRHGetew.naegr.....lqgrtdvpLteeGreqAealaerlag.....epidaiysSplkRarqTaeliaealglpveldegLrEidfGdwegl 88 
                 +y++RHG   +   +g       +  +dvpL ++G  qA++l+e+++       +++ i+sSp+ R+ qTa++ + al+lp+ +d gL E+   +    
  CCD25589.1   6 IYVARHGYRSNwVLKGPypdppTGIENDVPLAQHGLDQAKELGEYMKTkidpsLKPQLIISSPFYRCLQTAQPTKMALDLPLCVDRGLGEWFRVERATI 104
                 78999996544344444333346789********************9976666777788********************************88877777 PP

                 B.HHHHHH..HSHHHHHHHHH-GGG-B.........S-BHHHHHHHHHHHHH....HHHHHTTTSE.EEEEE-HHHHHHHHHHHHT--GGGGGGB--.. CS
  His_Phos_1  89 ttaeiaeeypeeleawlrdpadvrppg.........gEsledvaaRvaaale....elaarheget.vlvVsHggvirallarllglpleelrrlel.. 171
                 ++     + +e +    +d+ d++  +         gE+ ed+ +R++++l+    e++++ ++ + v+ ++H+++  al + llg++  +    +   
  CCD25589.1 105 PYPADVGTLKELFPGLISDDTDADDGWencsmpsrhGETEEDIFNRCKEFLSnffmEAEKKFPDVErVMFFTHAATKAALGMNLLGFSSVRDTLDDSgk 203
                 776665555555544444433332222334445579**************99777777777777669******************98754322111122 PP

                 ....-TT-EEEEEE-SS-EEEEEE CS
  His_Phos_1 172 ....dnaslsvlefdeggwrlvrl 191
                     + +sl + e ++ gw+++  
  CCD25589.1 204 ilnnPSCSLDKYEATGAGWKITMN 227
                 365688999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       299  (0.0166769); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2038.00
//
Query:       CCD25590.1  [L=226]
Description: hypothetical protein NDAI_0F02720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.9e-19   67.9   0.2    1.8e-18   66.1   0.1    2.0  2  RRM_1           RNA recognition motif. (a.k.a. RRM, RBD, or R
  ------ inclusion threshold ------
       0.01   15.9   1.3        3.2    7.9   0.1    3.2  3  DUF2129         Uncharacterized protein conserved in bacteria
       0.01   15.4   0.1      0.016   14.8   0.1    1.3  1  RRM_5           RNA recognition motif. (a.k.a. RRM, RBD, or R
      0.016   15.2   0.4      0.079   12.9   0.2    2.3  2  RL              RL domain
       0.14   12.2   0.1       0.31   11.1   0.1    1.5  1  Nup35_RRM_2     Nup53/35/40-type RNA recognition motif
       0.74   10.6   7.8        0.1   13.3   1.0    2.5  2  CarD_CdnL_TRCF  CarD-like/TRCF domain
        1.3    9.5  10.8       0.15   12.5   4.0    2.2  2  Spore_II_R      Stage II sporulation protein R (spore_II_R)
        6.3    7.2  21.4        2.3    8.7  12.1    2.1  2  AAA_23          AAA domain


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.1   0.1   8.2e-22   1.8e-18       1      69 [.      99     168 ..      99     169 .. 0.98
   2 ?   -1.1   0.0      0.75   1.7e+03       3      20 ..     170     187 ..     168     208 .. 0.75

  Alignments for each domain:
  == domain 1  score: 66.1 bits;  conditional E-value: 8.2e-22
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++V+ Lp+   e+eL+++Fs+fG  k+++l r+ +tg+s+ ++f+eF+sk+dA+ A +++n++ l+g+ l
  CCD25590.1  99 IYVSRLPHGFHEKELSKYFSQFGNLKEVRLARNkKTGNSRHYGFIEFTSKDDAKVAEDTMNNYLLMGHLL 168
                 8*****************************************************************9866 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.75
                 EESETTTSSHHHHHHHHH CS
       RRM_1   3 VgnLppdvteeeLkelFs 20 
                 V+ Lp+ ++ e+L+++ +
  CCD25590.1 170 VRLLPKGTKIEKLYQYKK 187
                 777899999999988755 PP

>> DUF2129  Uncharacterized protein conserved in bacteria (DUF2129)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.5   5.6e+03      39      52 ..      61      74 ..      60      76 .. 0.78
   2 ?    7.9   0.1    0.0014       3.2       9      28 ..      84     103 ..      83     106 .. 0.92
   3 ?    5.4   0.0    0.0087        20       8      29 ..     128     149 ..     125     153 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 2.5
     DUF2129 39 eedveeiveklkkl 52
                ++d e++ +k+kkl
  CCD25590.1 61 QSDSETTKHKIKKL 74
                56788889999987 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0014
     DUF2129   9 kslkqakqLrkyGdvhYvSk 28 
                 +s+k+++ L  y +++YvS+
  CCD25590.1  84 NSNKKKNALADYSSIIYVSR 103
                 689****************9 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0087
     DUF2129   8 lkslkqakqLrkyGdvhYvSkk 29 
                 l  +k++ + r+yG + ++Sk+
  CCD25590.1 128 LARNKKTGNSRHYGFIEFTSKD 149
                 6789999999**********96 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.1   7.1e-06     0.016      24      98 ..      94     172 ..      72     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 7.1e-06
       RRM_5  24 aegsVllVyglepdkvnldklFnlfclYgnvervkflktkk.....etalvqmgdasaveravqHLnnaklfgkrleval 98 
                   +s++ V+ l + +   ++l   f+++gn++ v++ ++kk      + +++  +  +++ a + +nn  l g+ l+v l
  CCD25590.1  94 DYSSIIYVSRLPHGF-HEKELSKYFSQFGNLKEVRLARNKKtgnsrHYGFIEFTSKDDAKVAEDTMNNYLLMGHLLQVRL 172
                 458888999997765.5678999****************9843333578*************************999975 PP

>> RL  RL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.2   3.5e-05     0.079      20      64 ..     103     152 ..      88     159 .. 0.81
   2 ?   -1.3   0.0      0.97   2.2e+03      25      48 ..     177     187 ..     171     193 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.5e-05
          RL  20 scpskisekkllkylsqhGkinkhFfYeskgv.....yavvEFsekesia 64 
                 ++p+++ ek+l ky+sq+G++++     +k +     y  +EF +k+  +
  CCD25590.1 103 RLPHGFHEKELSKYFSQFGNLKEVRLARNKKTgnsrhYGFIEFTSKDDAK 152
                 578999***************99776655544447779999999999655 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.97
          RL  25 isekkllkylsqhGkinkhFfYes 48 
                 +             ki+k++ Y++
  CCD25590.1 177 T-------------KIEKLYQYKK 187
                 4.............4555555555 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00014      0.31      19      52 ..     115     154 ..     107     154 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
  Nup35_RRM_2  19 ehFasfGeIvkhyvp......kevsvmyvkfesekdaekA 52 
                   +F +fG+  +          +++++ +++f s++da+ A
   CCD25590.1 115 KYFSQFGNLKEVRLArnkktgNSRHYGFIEFTSKDDAKVA 154
                  69*******996666777777****************987 PP

>> CarD_CdnL_TRCF  CarD-like/TRCF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.9      0.42   9.3e+02      70      84 ..      50      74 ..       6     100 .. 0.61
   2 ?   13.3   1.0   4.5e-05       0.1      24      94 ..     132     219 ..     111     220 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.42
  CarD_CdnL_TRCF 70 g..........gkrwektkekakkg 84
                    +          +++ e tk k+kk 
      CCD25590.1 50 IddeidglsdaQSDSETTKHKIKKL 74
                    2333333334444444444444443 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4.5e-05
  CarD_CdnL_TRCF  24 evegaekeylvleyadkkgdklyvPvdqldl...irkyiske....epkldklg............gkrwektkekakkgvkeeaaelvk 94 
                     +  g+++ y  +e+ +  +d   v  d +++   + ++++        k++kl             +k+ e+ kekakk+ +e +a+lv+
      CCD25590.1 132 KKTGNSRHYGFIEFTS--KDDAKVAEDTMNNyllMGHLLQVRllpkGTKIEKLYqykkrafndmkvKKSSEQLKEKAKKKHEERVAKLVE 219
                     3347777788888888..45555655555555565555544465544588888899999999999***********************97 PP

>> Spore_II_R  Stage II sporulation protein R (spore_II_R)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.0   6.8e-05      0.15       7     110 ..      32     135 ..      10     138 .. 0.87
   2 ?    1.0   0.6      0.24   5.4e+02      31      63 ..     184     216 ..     175     224 .. 0.51

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.8e-05
  Spore_II_R   7 lhvlanSdseeDqklKlkvrdavleeleellkeakskeeaeelikenleeieeiaeevlekegvdykvkvelgkeyfpekeYgdltlpaGeYealrvei 105
                 +hv++ Sd++eD +   ++ d++    + + +++++k++ ++l  +++e+ ++  ++  + ++++  + v+   + f eke ++++ + G+ + +r+  
  CCD25590.1  32 IHVVSSSDEREDEEANKDIDDEIDGLSDAQSDSETTKHKIKKLDPKKKEQDNNSNKKKNALADYSSIIYVSRLPHGFHEKELSKYFSQFGNLKEVRLAR 130
                 8**********************99999999888888888888777777777777777777888888888888999******99999999999999877 PP

  Spore_II_R 106 GegkG 110
                  + +G
  CCD25590.1 131 NKKTG 135
                 77666 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.24
  Spore_II_R  31 eeleellkeakskeeaeelikenleeieeiaee 63 
                 ++ +++++++k k+++e+l ++ +++ ee +++
  CCD25590.1 184 QYKKRAFNDMKVKKSSEQLKEKAKKKHEERVAK 216
                 445555555444444444444444444444444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  12.1     0.001       2.3     123     195 ..      21      95 ..       2      99 .. 0.77
   2 ?    4.2   1.8     0.025        55     133     186 ..     141     210 ..     104     220 .. 0.40

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.001
      AAA_23 123 ellg.skkiilnlilflgqerfeefelkdkkerleelekeleeledekkllekle.qekekekeleeleeeleei 195
                 e+++ ++++++ +++   +er++e+++kd  ++++ l++++ + e++k +++kl  ++ke+ ++ ++++++l ++
  CCD25590.1  21 ENIQeQQQEENIHVVSSSDEREDEEANKDIDDEIDGLSDAQSDSETTKHKIKKLDpKKKEQDNNSNKKKNALADY 95 
                 344413444666777788888999******************************548889999999999999876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.025
      AAA_23 133 nlilflgqerfeefelkdkke.........................rleelekeleeledekkllekleqekekekele 186
                  +i f  ++++         +                         ++e+l + ++ + ++ k  +  eq+kek k+ +
  CCD25590.1 141 GFIEFTSKDDA---------KvaedtmnnyllmghllqvrllpkgtKIEKLYQYKKRAFNDMKVKKSSEQLKEKAKKKH 210
                 23333333331.........12333333344444444454445444444444444444443333333333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2539  (0.141614); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 1620.20
//
Query:       CCD25591.1  [L=121]
Description: hypothetical protein NDAI_0F02730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-27   93.7   0.1    7.3e-27   93.3   0.1    1.1  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.1     4e-31   7.3e-27       1      73 [.       6      77 ..       6      78 .. 0.97

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 4e-31
                EHHHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEE CS
      Cyt-b5  1 tleelskhngkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvvhsekdaekllkkylvGkl 73
                t ee++khn+++d w++i+gkVYDvskfl++hpGge++i ++aG+Date+f+++ hs++ a k+lkk+++G+l
  CCD25591.1  6 TYEEIAKHNSPDDTWIVIEGKVYDVSKFLDEHPGGEEIIFELAGTDATENFEDIGHSDD-ALKILKKMYIGDL 77
                679***************************************************99999.8**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 952.28
//
Query:       CCD25592.1  [L=561]
Description: hypothetical protein NDAI_0F02740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-48  165.0   0.0    1.3e-47  161.8   0.0    2.0  2  DEAD            DEAD/DEAH box helicase
    3.8e-32  110.9   0.0    1.8e-31  108.7   0.0    2.1  2  Helicase_C      Helicase conserved C-terminal domain
    0.00018   21.6   0.0    0.00041   20.4   0.0    1.6  1  ResIII          Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.011   15.6   0.0      0.021   14.7   0.0    1.5  1  DUF5335         Family of unknown function (DUF5335)
      0.017   15.5   0.0        1.7    9.0   0.0    2.3  2  AAA_19          AAA domain
      0.083   12.1   0.0       0.12   11.5   0.0    1.2  1  ERCC3_RAD25_C   ERCC3/RAD25/XPB C-terminal helicase
       0.12   11.2   0.0        1.4    7.6   0.0    2.2  2  UTP25           Utp25, U3 small nucleolar RNA-associated SSU 


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8   0.0   5.2e-51   1.3e-47       1     176 []     142     313 ..     142     313 .. 0.96
   2 ?    1.0   0.0      0.12   3.2e+02      41      89 ..     358     403 ..     338     431 .. 0.69

  Alignments for each domain:
  == domain 1  score: 161.8 bits;  conditional E-value: 5.2e-51
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS...TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet...kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldn 96 
                 t iQ + +p +l+g+d+++ a+TGsGKTl +++p + ++  +      +gp +l+++PtreLa q+ ++++kf++  ++r  +++ggv++ +q+++l++
  CCD25592.1 142 TGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQpllSPGDGPIVLVLAPTRELAVQIQKECSKFGHSSRIRNTCVYGGVPRGQQIRDLSR 240
                 569*********************************9998879998999***************************99*******************99 PP

                 TCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  97 gvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 g +iv++tpgrl+d+l+ gk nl++v++lVlDEadr+ld+gf+++i++i+ q+       + +rq+++ SAT+pk+v++l
  CCD25592.1 241 GSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQI-------RPDRQTLMWSATWPKEVQQL 313
                 9****************************************************.......35678*********999875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.12
                 HS.TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHH CS
                 xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  41 et.kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaard 89 
                 et  ++++ k+li + t+ ++ ++ + l++ + +    +l+i g++++r+
  CCD25592.1 358 ETaSEDKESKILIFASTKRMCDEITKMLREDGWP----ALAIHGDKDQRE 403
                 33567888899*******9999999999888774....334444444444 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   3.6e+03      19      61 ..     194     240 ..     186     248 .. 0.71
   2 !  108.7   0.0   7.1e-35   1.8e-31       2     111 .]     349     460 ..     348     460 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1.4
                 EEEEESSHH...HHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHH CS
  Helicase_C  19 ilifvntid...rlek.vklllekkgikvavlhgelpqnereeileq 61 
                 +l+ ++t++   +++k ++ + +++ i+ ++++g  p  ++++ l++
  CCD25592.1 194 VLVLAPTRElavQIQKeCSKFGHSSRIRNTCVYGGVPRGQQIRDLSR 240
                 67777788865544446677777778999999999998888776655 PP

  == domain 2  score: 108.7 bits;  conditional E-value: 7.1e-35
                 HHHHHHHHH..HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSH CS
  Helicase_C   2 kleallell..kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnv 97 
                 k ++ll+ l   +e +++kilif+ t++++++ +k+l ++ g  ++++hg+  q+er+ +l +f++g+s +++atdva+rGid++++n+Vin+d+p n+
  CCD25592.1 349 KRDRLLKHLetASEDKESKILIFASTKRMCDEiTKML-REDGWPALAIHGDKDQRERDWVLGEFRAGNSPIMVATDVAARGIDVKGINFVINYDMPGNI 446
                 5566777777778999**************9955666.6669********************************************************* PP

                 HHHHHHHTTSSSTT CS
  Helicase_C  98 tsyiqriGRtgRag 111
                 ++y++riGRtgRag
  CCD25592.1 447 EDYVHRIGRTGRAG 460
                 ************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.6e-07   0.00041      30     168 ..     161     305 ..     153     308 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.6e-07
                 EESTTSTHHHHH.HHHHHHH-S..........-EEEEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--.......-SEEEEEHHHHHHTH CS
      ResIII  30 kmaTGtGKTlva.aklierllkkgkee.....kflflvprkslleqtleefkkflseayke....igkkvsgdkkkakekdstnkkilvttiqsldads 118
                 ++aTG+GKTl + +  i ++  +   +      +l+l+p+++l  q ++e +kf ++ + +     g++ +g++    +  s  ++i+++t  +l   +
  CCD25592.1 161 VAATGSGKTLSYcLPGIVHINAQPLLSpgdgpIVLVLAPTRELAVQIQKECSKFGHSSRIRntcvYGGVPRGQQI---RDLSRGSEIVIATPGRLIDML 256
                 68********9966666666665444477778*************************987655443333344333...4589999**********9999 PP

                 ........HHHTTT-SEEEEETGGGTTS....TTTHHHHHT---.SEEEEEESS CS
      ResIII 119 eeeeeeseellrdrfdviiiDEaHrlgak...kswreilekfke.avllglTAT 168
                      e  +   +r  +++ DEa r+ ++    ++r+i++++++    l  +AT
  CCD25592.1 257 -----EIGKTNLKRVTYLVLDEADRMLDMgfePQIRKIVDQIRPdRQTLMWSAT 305
                 .....666666777779***********97756999999999764555666777 PP

>> DUF5335  Family of unknown function (DUF5335)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   8.1e-06     0.021      47     109 ..     311     375 ..     303     380 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 8.1e-06
     DUF5335  47 vgisydpkddavevavggereeleHliakPaevy.v.eeedgelesleiededgektlitfeepe 109
                  +++ d  +d ++v+vg+ +    H ia+ +ev  + e+ d  l+ le+ +ed+e +++ f + +
  CCD25592.1 311 QQLASDYLNDPIQVQVGSLELSASHNIAQLVEVLsEfEKRDRLLKHLETASEDKESKILIFASTK 375
                 566677789*********9999***********9645889999****************998876 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.02        51      13     112 ..     158     275 ..     150     302 .. 0.56
   2 ?    9.0   0.0   0.00067       1.7      31      74 ..     354     397 ..     351     473 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.02
      AAA_19  13 llvtaGpGtGKT..rvlkhivallvelggvkp...eeillvaftgrAakelrerlaalgae..........atTiHrlal................ldf 80 
                 ++ +a  G+GKT  ++l +iv++  +   ++p     +l++a+t+  a +++++++++g++                  +                +++
  CCD25592.1 158 MIGVAATGSGKTlsYCLPGIVHINAQPL-LSPgdgPIVLVLAPTRELAVQIQKECSKFGHSsrirntcvygG-------VprgqqirdlsrgseivIAT 248
                 5557889999994446666666655555.333443568899****999999999977766655533333330.......24444444444344443222 PP

      AAA_19  81 ddlltealelleeaeeekklqeeellivDEfq 112
                  ++l ++le+      +++l++ ++l+ DE+ 
  CCD25592.1 249 PGRLIDMLEI-----GKTNLKRVTYLVLDEAD 275
                 2222222222.....33445444566667664 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00067
      AAA_19  31 vallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHr 74 
                 +++l+ + + k  +il+ a t+r ++e+++ l++ g +a  iH+
  CCD25592.1 354 LKHLETASEDKESKILIFASTKRMCDEITKMLREDGWPALAIHG 397
                 688999999999********************999999**9996 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.9e-05      0.12      49     154 ..     354     462 ..     333     482 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.9e-05
  ERCC3_RAD25_C  49 cefLikyhekrgDkiivfsDnvfaLkeyakklkk.....pyiyGetseaerlkilqkfkknpkvntiflskvgDtsiDlPeanvliqisshfgsrr 139
                    +++L +  e ++ ki++f+       e++k+l++       i+G+ +++er  +l +f++ ++   ++   v+   iD+   n +i  +   g   
     CCD25592.1 354 LKHLETASEDKESKILIFASTKRMCDEITKMLREdgwpaLAIHGDKDQRERDWVLGEFRAGNS-PIMVATDVAARGIDVKGINFVINYDM-PGNIE 447
                    5666677899999******9999999999999863332257******************9864.5667789************9998775.46666 PP

  ERCC3_RAD25_C 140 qeaqrlGriLrakkk 154
                        r+Gr  ra +k
     CCD25592.1 448 DYVHRIGRTGRAGAK 462
                    777888887777655 PP

>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.051   1.3e+02      76     102 ..     192     218 ..     190     224 .. 0.79
   2 ?    7.6   0.0   0.00056       1.4     318     416 ..     352     449 ..     291     468 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.051
       UTP25  76 pkvLillptreaalevvelllklleae 102
                 p vL+l+ptre a+++ ++  k+ +++
  CCD25592.1 192 PIVLVLAPTRELAVQIQKECSKFGHSS 218
                 77*************988776665555 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00056
       UTP25 318 kilpqlkk.ssskssgiliyipsyfdfvrvrnylkeekvsfaaiseysskkevsraRelFfkgkkkvlLyteRlhffrRykikgvkkvilYklPenpef 415
                 ++l++l+  s++k+s+ili+ ++      +++ l+e+    +ai+  ++++e      +F  g+  +++ t+ +   r  ++kg++ vi Y++P n e 
  CCD25592.1 352 RLLKHLETaSEDKESKILIFASTKRMCDEITKMLREDGWPALAIHGDKDQRERDWVLGEFRAGNSPIMVATDVAA--RGIDVKGINFVINYDMPGNIED 448
                 5677777745678999****99999999********************************************886..99***************99775 PP

       UTP25 416 y 416
                 y
  CCD25592.1 449 Y 449
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       458  (0.0255452); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3841.21
//
Query:       CCD25593.1  [L=149]
Description: hypothetical protein NDAI_0F02750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-34  115.0   0.0    1.5e-33  114.4   0.0    1.3  1  RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
      5e-15   54.7   0.0    8.6e-15   53.9   0.0    1.4  1  RNA_pol_L    RNA polymerase Rpb3/Rpb11 dimerisation domain
  ------ inclusion threshold ------
       0.28    9.6   0.3       0.29    9.5   0.3    1.1  1  Mem_trans    Membrane transport protein


Domain annotation for each model (and alignments):
>> RNA_pol_L_2  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   2.4e-37   1.5e-33       2      75 .]      68     141 ..      67     141 .. 0.98

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 2.4e-37
                  EEEEEES--HHHHHHHHHHHTTSTTEEEEEEECSSTTTSEEEEEEEESTSS-HHHHHHHHHHHHHHHHHHHHHH CS
  RNA_pol_L_2   2 ltfeingEDhTLgnlLrhlllknpsVefagYkipHPlepkmnlriqtkssnnpleaLkkalkdlldicdeleee 75 
                  ++f+i +EDhTLgn+Lr++++knp+Vef+gY+ipHP+e+ +n+riqt+++++++eaL+k+l+dl+d+cd +ee+
   CCD25593.1  68 ASFQILQEDHTLGNALRYIIMKNPQVEFCGYSIPHPSEEFLNIRIQTYGEITAVEALHKGLQDLMDLCDVVEEK 141
                  79********************************************************************9985 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   1.4e-18   8.6e-15       1      69 []      69     135 ..      69     135 .. 0.95

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 1.4e-18
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L   1 efllrgvdhtlgNaLRrillsevpgvaiea...pvvkvntdkdklilevetdgslkPeealkeAlkiLkekl 69 
                 +f++ ++dhtlgNaLR+i++ ++p+v++++   p       ++ l+++++t g +++ eal ++l++L++ +
  CCD25593.1  69 SFQILQEDHTLGNALRYIIM-KNPQVEFCGysiPH----PSEEFLNIRIQTYGEITAVEALHKGLQDLMDLC 135
                 699*****************.*********99866....67999*************************987 PP

>> Mem_trans  Membrane transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   4.9e-05      0.29     157     212 ..      13      68 ..       2     115 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 4.9e-05
   Mem_trans 157 eefpdtaasivsikvdsdvvsldgrkpleteaeikedgklhvtvrksnasrsdivs 212
                 +++ +ta  ++ + +d d+++++++ ++e+e+e +e  + ++++ + +as+   + 
  CCD25593.1  13 ANPTTTATTEDVEPKDVDMLANESQSQEEEEEEEDEPDREKIKILQQGASEDGCSA 68 
                 34449999999********************************9999999876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1266  (0.0706119); expected 358.6 (0.02)
Passed bias filter:                      712  (0.0397122); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1063.04
//
Query:       CCD25594.1  [L=651]
Description: hypothetical protein NDAI_0F02760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.8e-69  232.1  12.0    9.4e-69  231.4  12.0    1.3  1  DUF2417        Region of unknown function (DUF2417)
    2.6e-05   24.0   0.2    4.3e-05   23.3   0.2    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold


Domain annotation for each model (and alignments):
>> DUF2417  Region of unknown function (DUF2417)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.4  12.0   1.1e-72   9.4e-69       1     236 []      35     325 ..      35     325 .. 0.94

  Alignments for each domain:
  == domain 1  score: 231.4 bits;  conditional E-value: 1.1e-72
     DUF2417   1 ErepLLpkq................kkshrt.igeessegy...........lspddpa....vspynlwkv........rnlrwilnilllinliwlv 59 
                 Ere+LL++q                k+shrt ig+++++g+           +s+d ++      +++++++        +n+r++l+i++ +++iw++
  CCD25594.1  35 ERERLLSNQtetnyhtnensstivpKPSHRTpIGSTTTDGTaanttaittnpHSNDLESttsdGPMRRQYEIqkdyrnfyHNSRILLIIVVSMSAIWFI 133
                 99**************************************99999999998855555446666888999999999************************ PP

     DUF2417  60 llLisdFvslpglnnrgsgFndlalillslianllnllf..fglpSkldrvlnivlavLllvnllllllvkytReregfvgiasvlWaaltfllgilld 156
                 + LisdF+  + +nn+ ++Fn+++l+l+s++an++n++f  ++l+S+ld++lni+la L+++nl+ll+l+k+tR+r++f++ a+++W+++tf+lg++ld
  CCD25594.1 134 ISLISDFFFNFRFNNKLTSFNNIILLLISMVANSCNYIFndIELYSQLDYSLNIILASLTWFNLVLLYLIKFTRSRLSFTDKAIYIWTIFTFILGATLD 232
                 ********99***************************************************************************************** PP

     DUF2417 157 ryvekgkkeeeer....ltgreet.......rhtlkewlsilvrniikllllvvlilltltllLralDas.l.espgkfywvd.nhkyqlHlkC 236
                 ++ +k+  +++++    + g++ +       +ht++ewl+i++rniikl+ll++li ltlt+lL+++D++ + ++ ++f+++d ++++q+H++C
  CCD25594.1 233 WQNHKYAIQLNRQapttIDGND-EmrqpitsKHTINEWLQIATRNIIKLFLLAALISLTLTQLLYTIDLHrTaPARSEFQFTDpTNNTQIHIRC 325
                 ************9886433443.26999999***************************************855899****************** PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.2   4.8e-09   4.3e-05       1     253 [.     347     629 ..     347     633 .. 0.74

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.8e-09
                    SEEEEE-STTT...CGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH.HHHHHCT.....TSSEEEEEETHHHHHH CS
  Abhydrolase_1   1 pvlvilhGlpg...ssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddld.rildalg.....ddkltlvGhSmGGmia 87 
                    p +++ hG+ +   +s  w++    + L++    ++++   G+g+S+   a+ +   ++ s++  l+  i++ ++     d k++ vG+ +GG+++
     CCD25594.1 347 PIILYEHGGFDtwyESADWIK--ELYQLNR-IDSYCVYERAGYGFSDSMGAPTSISLQIESLNHALNsIIKENTKdfegaDMKFVAVGFGYGGLFS 439
                    679999*****5554444999..9999998.777888999999999887776555578999999999544665552222246899*********** PP

                    HHHHHHHGGGEEEEEEESE....CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHH.HHHHHC CS
  Abhydrolase_1  88 layaaeyperVkalvllga....idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfps.sgsdna 178
                    + ++ae+ + +++++l+++    +  ++ ++++ +  ++ + d  d+++ d+  n+ g +      + e+ +r+      ++++k f++  g + +
     CCD25594.1 440 RSWCAENLDLCDGMILVDSwhedLLLKNYISRLLPDPDHDDDDGDDNNRDDDNDNHNGKKRKEWRFTKELGTRNGW----KLWWKGFWNsFGLNLQ 531
                    *******************777777777777777888888888888888888888888877777777777777544....8899999997888999 PP

                    HHHHHHHHHHHHHHHHCCHHHHHHHHHC......................THHHHSEEEEEEETTCSSSCHHHHHHHHHC....HTSEEEEEEETC CS
  Abhydrolase_1 179 sslatgalksieqwpttdsaklllrlre......................lknvlaptlvisgtsDplvppkaledlaql....lpkkrlvvisda 248
                     s+  ++++s++++  + + +  ++lr+                      lk v  +t v+s+ ++++    ++ d+++      ++ ++++i+ +
     CCD25594.1 532 LSWILKHHGSMDRILGREMKYQNRFLRMkyletvtssilsyneiiknnknLKHV--KTTVVSS-KEMIRRSTQWGDWQRSltklSSNTKEWKIVEG 624
                    999999999999999999988888888899999999998888886664444444..4555433.44444335555555553332555888888888 PP

                    SSSHH CS
  Abhydrolase_1 249 gHlaf 253
                     H ++
     CCD25594.1 625 DHEIY 629
                    88876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1153  (0.0643092); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.31s 00:00:00.94 Elapsed: 00:00:00.46
# Mc/sec: 4256.67
//
Query:       CCD25595.1  [L=554]
Description: hypothetical protein NDAI_0F02770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.9e-15   55.6   0.1    4.9e-15   55.6   0.1    2.6  2  FHA           FHA domain
    3.5e-10   39.4  10.8      7e-10   38.5  10.8    1.5  1  zf-RING_11    RING-like zinc finger
    5.9e-07   29.7  10.7      1e-06   29.0  10.7    1.4  1  zf-RING_2     Ring finger domain
    0.00044   20.5   8.6     0.0011   19.2   8.6    1.7  1  zf-rbx1       RING-H2 zinc finger domain
     0.0019   18.5   0.0     0.0055   17.0   0.0    1.7  1  Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic d
     0.0028   17.5  10.5     0.0054   16.6  10.5    1.5  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
     0.0031   17.5   5.9     0.0073   16.3   5.9    1.6  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
     0.0064   16.3  10.2      0.012   15.5  10.2    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.012   15.5   8.4      0.022   14.7   8.4    1.4  1  zf-RING_5     zinc-RING finger domain
      0.082   13.2   0.1       0.26   11.6   0.1    1.8  1  QueF_N        Nitrile reductase, 7-cyano-7-deazaguanine-reduc
       0.11   12.4  10.0       0.18   11.7  10.0    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
       0.17   11.4   0.1       0.32   10.6   0.1    1.5  1  Sec_GG        SecD/SecF GG Motif
       0.34   11.2   6.5       0.83   10.0   6.5    1.7  1  zf-HC5HC2H    PHD-like zinc-binding domain
       0.49   10.5   8.1        1.2    9.3   8.1    1.7  1  zf-RING_UBOX  RING-type zinc-finger
        9.2    4.7  22.0         16    3.9  22.0    1.4  1  Macoilin      Macoilin family


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2       1.1   1.3e+03      14      26 ..     110     128 ..     100     145 .. 0.75
   2 !   55.6   0.1   4.1e-18   4.9e-15      11      69 .]     343     404 ..     320     404 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 1.1
                 T......STTSTTTEEEEE CS
         FHA  14 d......dpsiSrkHalik 26 
                 +      ++  Sr+H+ i+
  CCD25595.1 110 QsqahltHSNHSRYHLPIS 128
                 2444444999*****9886 PP

  == domain 2  score: 55.6 bits;  conditional E-value: 4.1e-18
                 EETTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEEST....TSEEEE-TTEEEEET CS
         FHA  11 ivlddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigk....gepveLksgdvielG 69 
                 +v++++++Sr H ++k+d++ g+++++D++S+ Gtf+N+qr+++    ++++ L++gd+i+lG
  CCD25595.1 343 VVFKSKVVSRTHGCFKVDEM-GNWFVRDVKSSSGTFLNHQRLSPastmSKDILLHDGDIIQLG 404
                 5677999*************.*****************************************8 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5  10.8   5.9e-13     7e-10       1      29 []     470     498 ..     470     498 .. 0.99

  Alignments for each domain:
  == domain 1  score: 38.5 bits;  conditional E-value: 5.9e-13
  zf-RING_11   1 eCsICLeefkpgqalfilpCsHtFHfkCI 29 
                 +CsICL+++k +qa+fi pC H +Hf+CI
  CCD25595.1 470 DCSICLSKIKACQAIFISPCAHSWHFHCI 498
                 9***************************9 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0  10.7   8.4e-10     1e-06       2      44 .]     470     515 ..     469     515 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.0 bits;  conditional E-value: 8.4e-10
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerw.lrssst..CPlCr 44 
                 +C+ICl++++  + + + pC H+ h++C++r+ + + ++  CP+Cr
  CCD25595.1 470 DCSICLSKIKACQAIFISPCAHSWHFHCIRRLvMLTYPQfvCPNCR 515
                 7*********999999***************7444444489****9 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   8.6   9.4e-07    0.0011      11      55 .]     468     515 ..     462     515 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 9.4e-07
     zf-rbx1  11 eeacieckapgdeecpvvl.GeCgHaFHlhCiskWlkt...rkvCPlcr 55 
                 +e c  c ++ ++ c+ ++ + C H++H+hCi++ +     + vCP cr
  CCD25595.1 468 DEDCSICLSKIKA-CQAIFiSPCAHSWHFHCIRRLVMLtypQFVCPNCR 515
                 688999****999.8766549*************9887788999****8 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   4.6e-06    0.0055      29      82 ..     343     404 ..     338     406 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 4.6e-06
                   EE---TTS-TT-EEEEEE.TTEEEEEE-CESS--EETTEE-S.ECC......--TTSEEEET CS
  Yop-YscD_cpl  29 ivLsDkevsrkhlkLeve.eesvrledlgsrngllvngerve.ele......lrpgdvlelG 82 
                   +v + k vsr h   +v+   ++ ++d++s  g+++n++r +  ++      l++gd ++lG
    CCD25595.1 343 VVFKSKVVSRTHGCFKVDeMGNWFVRDVKSSSGTFLNHQRLSpASTmskdilLHDGDIIQLG 404
                   6888899**********94568*******************963335678889999999998 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6  10.5   4.6e-06    0.0054       1      41 []     471     514 ..     471     514 .. 0.87

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.6e-06
                 -TTT-S--SS-E...E-TTS--B-CHHHHHHHHCTSSB-..-TTT CS
    zf-C3HC4   1 CpiCleeakepn..elleCkHsfCskCirkilksrkkvk..CPlC 41 
                 C+iCl+++k  +   +++C Hs +++Cir+++   ++ +  CP+C
  CCD25595.1 471 CSICLSKIKACQaiFISPCAHSWHFHCIRRLVM-LTYPQfvCPNC 514
                 ******998877779******************.5555556**** PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   5.9   6.1e-06    0.0073      34      82 ..     470     519 ..     456     522 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 6.1e-06
                 --TTCSTTTTTS-.EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB-- CS
  zf-ANAPC11  34 tcpsckfpGddcp.lvlGkckhnfhlhcilkwletetskglcpmcrqtfk 82 
                  c  c +    c  + +  c h++h hci + +     +  cp cr +  
  CCD25595.1 470 DCSICLSKIKACQaIFISPCAHSWHFHCIRRLVMLTYPQFVCPNCRSACD 519
                 5888888888897255667***************************8765 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  10.2   9.7e-06     0.012       2      40 .]     471     514 ..     470     514 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.7e-06
  zf-C3HC4_2   2 CpiCldmlkdpsvvt..pCgHvfCqkCilr..sLeekn.eCPlC 40 
                 C iCl  +k    ++  pC H+ +  Ci+r  +L+  +  CP C
  CCD25595.1 471 CSICLSKIKACQAIFisPCAHSWHFHCIRRlvMLTYPQfVCPNC 514
                 *********87666666*************8777888899**99 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   8.4   1.8e-05     0.022       2      43 ..     471     515 ..     470     516 .. 0.96

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.8e-05
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll...ekeavCpiCr 43 
                 C++C +k++  +++++ +C H+ + +C+++l     +++vCp Cr
  CCD25595.1 471 CSICLSKIKACQAIFISPCAHSWHFHCIRRLVmltYPQFVCPNCR 515
                 ********99999*******************************9 PP

>> QueF_N  Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   0.00022      0.26      70     104 ..     426     460 ..     417     464 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00022
                 HHHHHHHHTTTT-B-S-HHHHHHHHHHHHHHHHTS CS
      QueF_N  70 ksfklYlnsfnqtrfesaeeveetlekDlsaaaga 104
                 +s+kl  n+fn++ +++++++++++ +D s+  ++
  CCD25595.1 426 RSWKLRANAFNKEALQRIKNLQKIMIQDPSQQQQQ 460
                 8***************************9988765 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  10.0   0.00015      0.18       2      47 ..     468     518 ..     467     520 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
                 GSB-TTTSSSBS-...EEETTEEEEEE-HHHHHHHHH...TT-B-TTT--B- CS
  zf-C3HC4_3   2 deeCviClerprn...vvllpCgHlvlCeeCaekllk...rkkkCpiCrrpi 47 
                 de C+iCl++ +    +++ pC H     +C ++l      +  Cp Cr+  
  CCD25595.1 468 DEDCSICLSKIKAcqaIFISPCAHS-WHFHCIRRLVMltyPQFVCPNCRSAC 518
                 789******84442326777*****.99*******99999999******875 PP

>> Sec_GG  SecD/SecF GG Motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00027      0.32       9      19 ..     402     412 ..     401     412 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00027
                 EE-TTTS-EEE CS
      Sec_GG   9 NLGlDFtGGth 19 
                 +LG DF+GGt+
  CCD25595.1 402 QLGMDFRGGTE 412
                 7********95 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   6.5   0.00069      0.83      25      70 ..     457     502 ..     437     520 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00069
  zf-HC5HC2H  25 edvekikkerkklkCylCkkkvGaciqCskkkCkkafHvtCakeag 70 
                 ++ +++++++++  C++C +k+ ac     + C++++H++C ++  
  CCD25595.1 457 QQQQEQDHANEDEDCSICLSKIKACQAIFISPCAHSWHFHCIRRLV 502
                 34455666778899***************************98765 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   8.1   0.00097       1.2       1      39 []     471     512 ..     471     512 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00097
  zf-RING_UBOX   1 CpIClelft..dPlvl.pCGHtFCreClwelskslegafkCP 39 
                   C+ICl+  +  + ++  pC H+ + +C++ l     ++f CP
    CCD25595.1 471 CSICLSKIKacQAIFIsPCAHSWHFHCIRRLVMLTYPQFVCP 512
                   ********9663344449**********77888888888888 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  22.0     0.013        16     202     437 ..      56     283 ..      16     291 .. 0.63

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.013
    Macoilin 202 LPkeqqlldkeereaeeqlaaakelvevdpvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlsk 300
                  P+eq+l   ++  a++ l++ ++l  ++  + ++++h+ +++  + + p ++++ +++++  ++++s        ++   l+ +   +++++ +++++
  CCD25595.1  56 HPNEQRLSG-STPFASN-LNSIENLPAIQQEQQEHQGHQEQQQPDTRQDPRIQMQIQSQAHLTHSNHS------RYHLPISLSLTALPQSNANIQESNN 146
                 444443332.2222222.34445555555555555555555555555555555544433322221111......1222233333333334444444444 PP

    Macoilin 301 sessgsesellveesvkskssssssssnknskkasagsagssnssskkhsessksvtsssssknskkqklpaGkssaalkdaaenslpnnqlskkdalv 399
                 +  +g  +  l+++s  ++ ++  ++++++  +++a s + sn+s++ + ++s++ t+s++++n++ q+l   +  ++++ + en+  nn l  k+   
  CCD25595.1 147 NMDHGIDQPQLQSQSQYNTVNPRATNTMESFPSNTA-SNNVSNTSTNPFFQNSGHNTNSNNNNNNNNQQLIDPNIVNSTNPTNENNNDNNILNSKNLRH 244
                 444444444444444455555555555566665555.7889999*****************99999999987777778888888888888887776655 PP

    Macoilin 400 .rLeadikkLkaeLqasrqteqelrskissltseerslk 437
                      d k +k  L+ +   ++ l + i+s t +er  k
  CCD25595.1 245 fVYGPDQKNVKEILSLDLPPDTTLPDSIDSQTLQERKNK 283
                 477889999999999999999999999999999999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1461  (0.0814881); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 3692.14
//
Query:       CCD25596.1  [L=556]
Description: hypothetical protein NDAI_0F02780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.1e-218  724.9   0.0     5e-218  724.6   0.0    1.0  1  Malate_synthase  Malate synthase


Domain annotation for each model (and alignments):
>> Malate_synthase  Malate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  724.6   0.0  2.8e-222    5e-218       8     526 .]      25     544 ..      21     544 .. 0.99

  Alignments for each domain:
  == domain 1  score: 724.6 bits;  conditional E-value: 2.8e-222
                      THHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH.HSHHHCCTCCCH-TSS---S-EECCCCE-TCCCCCCC-CCHCCCCCCC CS
  Malate_synthase   8 vleaaeilteealefvaelvrdltprrrelLeeRdelqaeidkge.lndflketkylreepewktatlhielqdrrveiiGkadrkmiinalne 100
                      +++ a ilt+ealef++ l+r++++rr++lL++R   q+++++g+ + dfl+et ++r++p+w   +l+++l +r++ei+G+  r+m+inaln+
       CCD25596.1  25 QTTDATILTKEALEFIVLLHRTFNERRKTLLNNRVAFQNKLETGKiQLDFLPETVSIRNDPTWLGPSLAPGLINRSCEITGPPLRNMLINALNS 118
                      677899***************************************888********************************************** PP

                      SSSEEEEESSTTS--HHHHHHCCHHCCCHCCTTT-EEEET-TSEEEEETTSESSSSEEEEE---TTTEEEEEECTTCEEEHHHHHHHHHHHHHH CS
  Malate_synthase 101 saittiaDfEDsvapnwenlvkGqlnledavrgrisfrkenkdksYklndglegrsllfvRnrGwhltekhilvdGeeisegilDfgliffhna 194
                      +++t+++DfEDs++p+w+nl+ Gq+nl+d  r++i+f++  k+ksYkln+++++ ++++vR+rGwh+te+h+lvd e+is++i+Dfgl+ffhna
       CCD25596.1 119 DVNTYMTDFEDSISPTWTNLIGGQINLYDVLRNQIDFTSI-KGKSYKLNKKVQDSPTIIVRPRGWHMTENHLLVDNEPISASIFDFGLYFFHNA 211
                      ***************************************8.***************************************************** PP

                      HHCSCCTTSSEEEEE-S-SSHHHHHHHHHHHHHHHHHCTSSTTSCEEEEEE-SHHHHTTHHHHHHCTTTTEEEEEE-CHHHHHHHHHHTCCCCG CS
  Malate_synthase 195 kelklsrgggpyivlPKmegpqEaalwnevFsraedllglprgtikatvliEtlraslnldeiiyelrdrvaglNcGrlDyifseiktlreagd 288
                      ++  ++ g+gpy++lPKme++ Ea+lwn++F++a+d++g+ rgti+atvliEtl+as++++eii +lr++++glNcGr+Dyifs+ik+++++++
       CCD25596.1 212 EKS-VQLGKGPYFYLPKMEHHLEAKLWNDIFNVAQDYIGMSRGTIRATVLIETLPASFQMEEIIWQLRQHSSGLNCGRWDYIFSTIKKFKNDPN 304
                      **9.****************************************************************************************** PP

                      CB...CGGGGCCSHHHHHHHHHHHHHHHHTT.CCCCCCCTCSEECCCEHHHCCCHHHHHHHCHHHHHCT-SEEEESSHHHHHHHHHHHHHCHCH CS
  Malate_synthase 289 mvLPdRkavtktapfikaYekllvktchkrgvhamgGlaakipikkdmeaneellekvredKlrevraGadgaWvahPtlatlaaevfeevdva 382
                      ++LPdR +vt+t+pf++aY+k+l++tch+r+vhamgG+aa+ipik+d+ +n+++++kv++dK+re+++G+dg+W+ahP+la+++++vf + + +
       CCD25596.1 305 HILPDRDQVTMTSPFMDAYVKRLINTCHRRNVHAMGGMAAQIPIKNDPVKNDAAMNKVKTDKIRELTNGHDGSWIAHPALAQICNDVFIN-MGT 397
                      *****************************************************************************************9.788 PP

                      CHHCCHHTTT.HHHHHHHHCS..--BBHHHHHHHHHHHHHHHHHHHHHHCT-SSEEETTEEESHHHHHHHHHHHHHHHHTTSC-CCHSHCHHHH CS
  Malate_synthase 383 pnQielakee.vritaddLlt.kipeaeeteeglrnnvqvglqYvvaWlrgvGcvpiihLmEDaATaeiSrqqlaqWirhgvvlkeqgvkvsle 474
                      pnQi++  +e +++ta+dL + +i +a+   eg+++n+++glqY++aWlrg+Gcvpi+ LmEDaATae+Sr+ql+qW++h v++++ g kv+++
       CCD25596.1 398 PNQIHFVPSEgTKVTAQDLTNtNIINAKVSIEGIKQNLDIGLQYMEAWLRGSGCVPINSLMEDAATAEVSRCQLYQWVTHSVMTSD-GIKVTPQ 490
                      ******99999*********999***************************************************************.7****** PP

                      HHHHHHHHHCCHHHHHHH..CCTTHHHCHHHHHHHHHTTTCCC-CHHHHHCCHH CS
  Malate_synthase 475 lmaklvdeenarleelgk..edeayreaakllkkeataeefadfltlkaykeli 526
                      l++kl++e++++l+++++  ++++++ aak+l +e+t+e+f+dflt+++y+e++
       CCD25596.1 491 LTSKLLKEQVDKLKQVSPvgNQNKFDLAAKYLLPEITGEKFSDFLTTLLYDEIV 544
                      ***************999999******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 4230.28
//
Query:       CCD25597.1  [L=1104]
Description: hypothetical protein NDAI_0F02790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.8e-24   83.7   2.3    1.1e-23   83.3   0.5    2.3  2  DCP2         Dcp2, box A domain
    1.9e-12   47.4   0.0    6.2e-12   45.7   0.0    1.9  1  NUDIX        NUDIX domain
  ------ inclusion threshold ------
        2.9    7.9   6.9         20    5.2   1.5    3.4  2  Consortin_C  Consortin C-terminus
          5    7.5   5.8         20    5.6   0.3    3.8  4  AAA_assoc_2  AAA C-terminal domain
        7.9    6.6  15.3      0.052   13.6   5.0    2.7  3  RcpC         Flp pilus assembly protein RcpC/CpaB


Domain annotation for each model (and alignments):
>> DCP2  Dcp2, box A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.5   3.1e-27   1.1e-23       2      83 .]      18     100 ..      17     100 .. 0.98
   2 ?   -3.7   0.0       4.3   1.6e+04      45      66 ..     678     695 ..     670     708 .. 0.56

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 3.1e-27
                 HHHHHHHHHTTTS-HHHHTSHHHHHHHHHHHHHHHHHTHHHHTTTS----HHHHHHHHHCCSCCCHHC.CCHCHHHHHHHHHH CS
        DCP2   2 iLddlavrFilnlpeeeleslerlffqleeAhWfYeDfvreknpklpslklkeFaeklfekcpllkkl.kedvdeileefkeY 83 
                 +L+dl+vrFi+n+p e+l+++er +f++eeA WfY+Df++  np+lp lk+k+Fa k+++ cpl++k+ + ++d++l++f++Y
  CCD25597.1  18 ALEDLLVRFIINCPPEDLSTIERELFHFEEASWFYTDFIKLMNPTLPPLKIKSFAIKIIKLCPLIWKWkNIKADQALQKFSTY 100
                 79******************************************************************8889*********99 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.3
                 T.TS----HHHHHHHHHCCSCCC CS
        DCP2  45 p.klpslklkeFaeklfekcpll 66 
                 + kl+++kl++F      + p+l
  CCD25597.1 678 KiKLNKIKLEMFF-----NSPML 695
                 2245555555554.....44443 PP

>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   1.7e-15   6.2e-12       6     118 ..     107     213 ..     102     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 1.7e-15
                 EEEEEEETT.SEEEEEEESSSSTTTEESSEEECBTTS.HHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECSGCSSTSTT CS
       NUDIX   6 vgvvllnek.gevLlvrrskkpfpgWelPgGkvepgE.tpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfleevegelepnden 102
                  g+ ++n+  +++Llv+ +    ++W++P Gk+ ++E ++ ++++RE++EE+G+  +l  +++  ++ + ++ +++ +  i+++f  +++ + +p+ +n
  CCD25597.1 107 RGAAIFNKAlNKILLVKGT--ESDSWSFPRGKISKDEnDV-DCCIREVKEEIGF--DLSSYIN--EDQFIERNIQTKNYKIYLIFGIDENFDFKPQVRN 198
                 567788888566****977..5556************777.************9..6677777..2333333333324444445559999999999*** PP

                 TEEEEEEEEHHHHHHH CS
       NUDIX 103 evsevrwvpleellke 118
                 e+++++w ++++l  +
  CCD25597.1 199 EIDKIEWKDFKKL-SK 213
                 ********99999.33 PP

>> Consortin_C  Consortin C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.5    0.0056        20       3      41 ..     511     547 ..     509     570 .. 0.56
   2 ?    3.8   0.3     0.016        56       4      32 ..     867     895 ..     864     927 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0056
  Consortin_C   3 spaeglvsilkkrkeledelkeeaqsekksskrkvrfke 41 
                  s+++ l+ ilk  k++++++++++q++++++  + + ++
   CCD25597.1 511 SSSNELLNILKYPKQQQQQQQQQQQQQQQQQ--QQQQQQ 547
                  5678999***977776664433333333222..222333 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.016
  Consortin_C   4 paeglvsilkkrkeledelkeeaqsekks 32 
                  p++ l+silkk +  ++++++++q+++++
   CCD25597.1 867 PSNILLSILKKSSPPQQQQQQQKQTDTET 895
                  7889*******998887665555544433 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.17   6.1e+02      24      42 ..     279     304 ..     275     320 .. 0.73
   2 ?   -2.2   0.1       1.5   5.4e+03      26      52 ..     516     542 ..     514     557 .. 0.51
   3 ?    5.6   0.3    0.0055        20      21      72 ..     559     623 ..     553     624 .. 0.86
   4 ?    0.0   0.1      0.31   1.1e+03      26      58 ..     701     733 ..     678     738 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.17
                  XXXXXXXXXXXXXXXX........XX CS
  AAA_assoc_2  24 RkaLnlLElaaeaaeak.......eg 42 
                  R +Ln+L  a+++++++       ++
   CCD25597.1 279 RELLNMLHSAVQSNDNEstttaplND 304
                  99**********99876555555544 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.5
                  XXXXXXXXXXXXXX.XXXXXXXXXXXX CS
  AAA_assoc_2  26 aLnlLElaaeaaeakegkieitledle 52 
                  +Ln+L    +++++++++++ ++++ +
   CCD25597.1 516 LLNILKYPKQQQQQQQQQQQQQQQQQQ 542
                  577777666666654333332222222 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0055
                  XXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXX...XXXXXXXXXHHHH CS
  AAA_assoc_2  21 GDaRkaLnlLElaaeaaeak..........egkieitledleealqrka...lryDkagdehYdl 72 
                   D +++Ln+L +  ++a+ +          e++i  + e++e++lq ++    r D++ d+ Y++
   CCD25597.1 559 SDSKALLNVLKASSSSAHPNttthvgnvneESPIPEEDETIETSLQDESqdeSRLDNNDDDSYEM 623
                  69999******999999999999***9987777778889999999877767799*******9986 PP

  == domain 4  score: 0.0 bits;  conditional E-value: 0.31
                  XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX CS
  AAA_assoc_2  26 aLnlLElaaeaaeakegkieitledleealqrk 58 
                  +L   E   e++ ++e++++i++e+l+e+ +++
   CCD25597.1 701 ILSSDENENETETEDENEEKIEQEELQEIYKEE 733
                  555556666667777999*********998765 PP

>> RcpC  Flp pilus assembly protein RcpC/CpaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   5.0   1.5e-05     0.052       7      88 ..     452     544 ..     449     571 .. 0.70
   2 ?   -4.4   0.1         5   1.8e+04      62      80 ..     701     719 ..     694     725 .. 0.48
   3 ?   -1.9   0.3      0.95   3.4e+03      73      83 ..     881     891 ..     836     901 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.5e-05
        RcpC   7 lppgkrAvaievd..evtgvaglirpGdrVDVllt.......esekedsesektvaelllqnvrVLavgq........eeakkreeedeekkkeaetas 88 
                 ++p   A  i+++  ++t++++ i  +++ ++l          s++++++++++++++l +  + L + +        +      ++++++++++++++
  CCD25597.1 452 IHPTSFANPIATQnlNKTATSNIIGKNQLLNILHKsmngppsPSQQQQQQQQTSQTQMLSSSNELLNILKypkqqqqqQ------QQQQQQQQQQQQQQ 544
                 55556666666663358999999999999999999999999988999999999999******99999999986543221......22222222222222 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 5
        RcpC  62 VLavgqeeakkreeedeek 80 
                 +L+ +++e+++++e+++e+
  CCD25597.1 701 ILSSDENENETETEDENEE 719
                 5555663333333333333 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.95
        RcpC  73 reeedeekkke 83 
                  +++++++k++
  CCD25597.1 881 PQQQQQQQKQT 891
                 22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1104 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3998  (0.222991); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                       184  (0.0102627); expected 17.9 (0.001)
Passed Fwd filter:                        57  (0.00317921); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.68u 0.36s 00:00:02.04 Elapsed: 00:00:00.53
# Mc/sec: 6229.66
//
Query:       CCD25598.1  [L=495]
Description: hypothetical protein NDAI_0F02800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-20   73.4   1.5    2.6e-20   72.7   0.0    2.1  3  CTU2            Cytoplasmic tRNA 2-thiolation protein 2
  ------ inclusion threshold ------
        0.1   12.6   1.2       0.25   11.4   1.2    1.7  1  Zn_Tnp_IS91     Transposase zinc-binding domain
       0.25   12.1   4.9       0.16   12.8   1.9    2.2  2  zinc_ribbon_15  zinc-ribbon family


Domain annotation for each model (and alignments):
>> CTU2  Cytoplasmic tRNA 2-thiolation protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4       1.7     1e+04      42      51 ..      19      28 ..       4      45 .. 0.58
   2 ?   -2.4   0.0       0.9   5.4e+03      50      79 ..     114     143 ..     113     163 .. 0.74
   3 !   72.7   0.0   4.3e-24   2.6e-20       1     111 [.     329     450 ..     329     451 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.7
        CTU2 42 letsekCalC 51
                 ++++ C+ C
  CCD25598.1 19 SRKEKFCTSC 28
                2334444444 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.9
        CTU2  50 lCglplddkakewkrtitiselseteseee 79 
                 +C ++ +d+ +e +++i+  ++++ +s+++
  CCD25598.1 114 VCYSKTRDDIEEINSKIAKLKSERYASNKD 143
                 677777778888788887777777777665 PP

  == domain 3  score: 72.7 bits;  conditional E-value: 4.3e-24
        CTU2   1 sIqrLtekFilklekdfpstvstvvrTgeKLvknksseeae...letsekCalCglplddkakewkrtitiselseteseeekeelekakeeeeeeaee 96 
                 +I++L +k+++++e d++++++tv+rTg+KL++++++++a+   +++++kC+lC  +l+++a++w r+i++ e  + ++ ee+e +++++++e      
  CCD25598.1 329 TINELARKYFDDIEGDYSNVIATVLRTGDKLAEPETQADATttaASADDKCSLCLGKLHSNASNWLRSIAVIEGFPIANAEEQELYDRWSQSEIGI--- 424
                 79********************************99877767778999**********************************99999997554433... PP

        CTU2  97 eelaeee...........eeLCYgCl 111
                 e  ++++             LCYgC 
  CCD25598.1 425 EMAEYMKlkddiwthgedILLCYGCI 450
                 33333334468999999999*****7 PP

>> Zn_Tnp_IS91  Transposase zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.2   4.2e-05      0.25      39      86 ..       4      48 ..       2      53 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.2e-05
  Zn_Tnp_IS91 39 ryeCeeCghekivyfsCksrhCpsCqkkateewlekqqeellpvpyrh 86
                 +  C+ C+ +++   s k+++C+sC +k     + kq+++++  +y+ 
   CCD25598.1  4 MDICQRCRTNETTVISRKEKFCTSCFTK---FIVLKQRKQMMSSDYYR 48
                 567**********************855...44556666666666665 PP

>> zinc_ribbon_15  zinc-ribbon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.9   2.6e-05      0.16       2      50 ..       6      54 ..       5      74 .. 0.83
   2 ?   -2.2   0.1       1.2   7.2e+03      56      78 ..     367     389 ..     354     392 .. 0.61

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.6e-05
  zinc_ribbon_15  2 lCpkCgklskaelvkkkkvlklffipvfkwkkkkpylacskCkslleas 50
                    +C++C +++++++ +k+k+++ +f +++ +k++k+++  +  + ++++ 
      CCD25598.1  6 ICQRCRTNETTVISRKEKFCTSCFTKFIVLKQRKQMMSSDYYRDIFKIL 54
                    7*******************************99999888766666655 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.2
  zinc_ribbon_15  56 eiekkessekkeCknCgkeveee 78 
                     + +++++s   +C+ C  +++++
      CCD25598.1 367 DATTTAASADDKCSLCLGKLHSN 389
                     33334444488898887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1051  (0.0586201); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3632.98
//
Query:       CCD25599.1  [L=609]
Description: hypothetical protein NDAI_0F02810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-28   96.8  34.4    1.1e-05   25.0   0.4    9.8  9  TPR_1            Tetratricopeptide repeat
    9.9e-28   94.0  36.0    7.8e-05   22.5   0.2   10.9 11  TPR_2            Tetratricopeptide repeat
    5.1e-19   68.7   3.9    5.8e-05   23.7   0.3    6.2  6  TPR_16           Tetratricopeptide repeat
    9.8e-16   57.2  26.7    1.7e-05   24.4   0.4    8.3  8  TPR_11           TPR repeat
    1.6e-14   54.2  18.9    1.4e-05   25.5   3.8    6.7  5  TPR_19           Tetratricopeptide repeat
    7.8e-14   51.2  14.5      0.041   14.7   1.7    9.4 10  TPR_14           Tetratricopeptide repeat
    3.5e-13   48.6  29.9     0.0039   17.3   0.2    8.5  8  TPR_8            Tetratricopeptide repeat
    2.3e-12   47.0  15.2    0.00059   20.1   0.8    7.5  8  TPR_12           Tetratricopeptide repeat
      3e-11   42.9   8.1     0.0011   19.1   0.2    6.8  6  TPR_17           Tetratricopeptide repeat
      2e-08   34.3  14.3     0.0077   16.4   0.0    5.0  5  ANAPC3           Anaphase-promoting complex, cyclosome, subun
    6.3e-07   29.1   1.0    3.3e-05   23.4   0.5    3.3  4  TPR_MalT         MalT-like TPR region
    1.8e-06   28.0   0.3       0.18   12.0   0.0    4.8  5  TPR_9            Tetratricopeptide repeat
    5.3e-05   23.0  12.2       0.34   11.0   1.0    6.3  7  TPR_7            Tetratricopeptide repeat
    0.00036   20.3  13.2       0.68    9.6   0.0    4.9  5  TPR_21           Tetratricopeptide repeat-like domain
     0.0008   19.0   0.2        1.5    8.5   0.1    3.0  3  HrpB1_HrpK       Bacterial type III secretion protein (HrpB1_
     0.0023   18.0   2.4     0.0023   18.0   2.4    3.7  4  Exonuc_VII_S     Exonuclease VII small subunit
     0.0041   17.7   0.2       0.73   10.6   0.2    4.1  3  Sel1             Sel1 repeat
     0.0048   17.0   2.9     0.0048   17.0   2.9    2.6  2  Peptidase_S49_N  Peptidase family S49 N-terminal
  ------ inclusion threshold ------
      0.011   16.1  12.9      0.085   13.2   2.3    4.3  4  TPR_20           Tetratricopeptide repeat
      0.034   14.0   6.5        2.7    8.0   0.6    4.7  4  TPR_10           Tetratricopeptide repeat
      0.082   13.6  24.7        1.7    9.4   0.5    8.3  6  TPR_6            Tetratricopeptide repeat
       0.14   12.3   4.7       0.44   10.7   2.0    2.9  2  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
        0.7   10.7   3.1         18    6.3   0.2    3.3  3  TPR_4            Tetratricopeptide repeat
        2.9    8.0   8.0      1e+02    3.0   0.0    4.8  4  DUF3856          Domain of Unknown Function (DUF3856)


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.6     1e-07   7.7e-05       1      31 [.     110     140 ..     110     143 .. 0.92
   2 !   18.5   0.2   1.7e-06    0.0013       4      34 .]     146     176 ..     143     176 .. 0.89
   3 !    9.9   0.0   0.00085      0.64       2      22 ..     178     198 ..     177     203 .. 0.89
   4 ?    3.6   0.0     0.085        63       8      32 ..     328     352 ..     321     354 .. 0.91
   5 !    8.0   0.1    0.0036       2.7      21      34 .]     374     387 ..     374     387 .. 0.92
   6 !   25.0   0.4   1.5e-08   1.1e-05       2      34 .]     389     421 ..     388     421 .. 0.96
   7 ?    5.2   0.0     0.027        20       3      29 ..     424     450 ..     422     454 .. 0.89
   8 !    7.6   0.1    0.0046       3.4       3      30 ..     465     485 ..     463     487 .. 0.53
   9 !   15.3   0.8   1.7e-05     0.013       3      33 ..     536     566 ..     535     567 .. 0.89

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 1e-07
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALeln 31 
                 a al+ +Gn +fk  k+++A++yy  AL+l 
  CCD25599.1 110 AMALKDKGNELFKTSKFEDAIKYYHYALKLK 140
                 56999************************97 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 1.7e-06
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   4 lynlGnayfklgkydeAleyyekALelnPnn 34 
                 + n+ ++y +l +y++ +ey  kAL+l+P++
  CCD25599.1 146 YSNISACYASLLQYEKVIEYATKALKLRPTF 176
                 556668***********************96 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00085
                 HHHHHHHHHHHHTT-HHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAle 22 
                 k+l ++++ay  +g++ +A  
  CCD25599.1 178 KVLMRRALAYEAMGNFGDAMF 198
                 7899************99976 PP

  == domain 4  score: 3.6 bits;  conditional E-value: 0.085
                 HHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   8 GnayfklgkydeAleyyekALelnP 32 
                 G +y+ +++  +A +  + A+el P
  CCD25599.1 328 GILYYMKNETLKAHDSIKSAIELHP 352
                 899********************99 PP

  == domain 5  score: 8.0 bits;  conditional E-value: 0.0036
                 HHHHHHHHHHSTTH CS
       TPR_1  21 leyyekALelnPnn 34 
                 l+ ++kALel+Pnn
  CCD25599.1 374 LQNFDKALELEPNN 387
                 688**********8 PP

  == domain 6  score: 25.0 bits;  conditional E-value: 1.5e-08
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnPnn 34 
                  ++y +G+ yf  ++y++A ++++k+ el++nn
  CCD25599.1 389 AIYYHRGQSYFIAQQYEKAGKDFDKVKELDENN 421
                 58*****************************98 PP

  == domain 7  score: 5.2 bits;  conditional E-value: 0.027
                 HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALe 29 
                 a+ +l+ + ++  k+d+++  +++A +
  CCD25599.1 424 AYIQLACLAYRESKFDDCETLFSEARR 450
                 99********************99965 PP

  == domain 8  score: 7.6 bits;  conditional E-value: 0.0046
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALel 30 
                 +l          g+ ++A + ++kA+el
  CCD25599.1 465 VL-------ADRGESEKAMKEFDKAIEL 485
                 44.......4455555555555555555 PP

  == domain 9  score: 15.3 bits;  conditional E-value: 1.7e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1   3 alynlGnayfklgkydeAleyyekALelnPn 33 
                 a  +l+++ +++++ deA++ +e+A el  +
  CCD25599.1 536 ARLGLAQLKLQQEDIDEAIQLFEEAAELAKS 566
                 567899*********************9866 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.4   2.3e-05     0.017       2      31 ..     111     140 ..     110     142 .. 0.90
   2 !   17.0   0.1     6e-06    0.0045       2      33 ..     144     175 ..     143     176 .. 0.94
   3 !    8.5   0.0    0.0031       2.3       2      22 ..     178     198 ..     177     203 .. 0.88
   4 ?   -1.4   0.1       4.8   3.6e+03      20      32 ..     292     304 ..     289     305 .. 0.78
   5 !    8.2   0.0    0.0041         3       1      33 [.     321     353 ..     321     354 .. 0.93
   6 ?    5.6   0.1     0.028        21      22      34 .]     375     387 ..     374     387 .. 0.89
   7 !   22.5   0.2     1e-07   7.8e-05       2      34 .]     389     421 ..     388     421 .. 0.96
   8 !   10.5   0.0   0.00075      0.56       3      33 ..     424     454 ..     422     455 .. 0.94
   9 !    9.6   0.2    0.0014         1       8      31 ..     463     486 ..     462     488 .. 0.89
  10 ?    0.4   0.0       1.2     9e+02      16      33 ..     515     532 ..     514     533 .. 0.88
  11 !   14.2   1.3   4.8e-05     0.036       6      32 ..     539     565 ..     535     567 .. 0.89

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.3e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleld 31 
                  al   G+ ++k  ++e+A++++  Al+l 
  CCD25599.1 111 MALKDKGNELFKTSKFEDAIKYYHYALKLK 140
                 578889**********************96 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 6e-06
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                  ++ n+  +y+ l +ye+ +e+  kAl+l P+
  CCD25599.1 144 IYYSNISACYASLLQYEKVIEYATKALKLRPT 175
                 6899***************************8 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.0031
       TPR_2   2 ealynlGlayyklgdyeeAle 22 
                 ++l++++lay+++g++ +A  
  CCD25599.1 178 KVLMRRALAYEAMGNFGDAMF 198
                 6899*************9975 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 4.8
       TPR_2  20 AleafekAleldP 32 
                 A + f kA el  
  CCD25599.1 292 ADKSFLKAAELFK 304
                 7789999999975 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0041
       TPR_2   1 aealynlGlayyklgdyeeAleafekAleldPn 33 
                 a al + G +yy +++  +A++  + A+el P+
  CCD25599.1 321 AIALEYSGILYYMKNETLKAHDSIKSAIELHPR 353
                 6789999***********************995 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.028
       TPR_2  22 eafekAleldPnn 34 
                 + f+kAlel+Pnn
  CCD25599.1 375 QNFDKALELEPNN 387
                 679********98 PP

  == domain 7  score: 22.5 bits;  conditional E-value: 1e-07
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                  ++y +G++y+ +++ye+A ++f+k+ eld+nn
  CCD25599.1 389 AIYYHRGQSYFIAQQYEKAGKDFDKVKELDENN 421
                 68****************************998 PP

  == domain 8  score: 10.5 bits;  conditional E-value: 0.00075
       TPR_2   3 alynlGlayyklgdyeeAleafekAleldPn 33 
                 a+ +l++++y+  ++++++ +f +A +  P+
  CCD25599.1 424 AYIQLACLAYRESKFDDCETLFSEARRKFPT 454
                 899************************9997 PP

  == domain 9  score: 9.6 bits;  conditional E-value: 0.0014
       TPR_2   8 GlayyklgdyeeAleafekAleld 31 
                 +++++ +g+ e+A + f+kA+el+
  CCD25599.1 463 AEVLADRGESEKAMKEFDKAIELE 486
                 57889999*************995 PP

  == domain 10  score: 0.4 bits;  conditional E-value: 1.2
       TPR_2  16 dyeeAleafekAleldPn 33 
                 ++ e ++++++A   dP+
  CCD25599.1 515 NFVEGIQLLQEACDKDPR 532
                 788999**********96 PP

  == domain 11  score: 14.2 bits;  conditional E-value: 4.8e-05
       TPR_2   6 nlGlayyklgdyeeAleafekAleldP 32 
                  l+++ +++ d +eA+++fe+A el+ 
  CCD25599.1 539 GLAQLKLQQEDIDEAIQLFEEAAELAK 565
                 5899999*****************986 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00063      0.47       2      27 ..     115     140 ..     114     175 .. 0.78
   2 ?    0.6   0.1       1.2   9.3e+02      18      53 ..     164     196 ..     153     199 .. 0.72
   3 ?   -0.9   0.0       3.5   2.6e+03      16      53 ..     299     340 ..     293     353 .. 0.67
   4 !   13.4   0.0   0.00013     0.095      18      59 ..     375     413 ..     371     421 .. 0.85
   5 !   14.2   0.0     7e-05     0.052       2      61 ..     427     483 ..     426     493 .. 0.87
   6 !   23.7   0.3   7.8e-08   5.8e-05      12      64 ..     515     564 ..     513     568 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00063
      TPR_16   2 alaraalragdyddAaaaleaalkrd 27 
                 ++++++++  +++dA+++++ alk+ 
  CCD25599.1 115 DKGNELFKTSKFEDAIKYYHYALKLK 140
                 5799********************98 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 1.2
      TPR_16  18 aaleaalkrdpssPdaaeAllllgdaalrqgrlaeA 53 
                 ++++ alk++   P     l+ +++a+ + g++ +A
  CCD25599.1 164 EYATKALKLR---PTFSKVLMRRALAYEAMGNFGDA 196
                 5667778888...55555888888888887777766 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 3.5
      TPR_16  16 AaaaleaalkrdpssPd....aaeAllllgdaalrqgrlaeA 53 
                 Aa++++  l ++++  +    +a Al ++g +++ +++  +A
  CCD25599.1 299 AAELFKDQLSQNKDNEAikekTAIALEYSGILYYMKNETLKA 340
                 555555555555555445555899999999999998887776 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 0.00013
      TPR_16  18 aaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59 
                   ++ al++    P +++ ++++g++++ ++ +++A   +++
  CCD25599.1 375 QNFDKALELE---PNNPAIYYHRGQSYFIAQQYEKAGKDFDK 413
                 67999*****...9999*******************966665 PP

  == domain 5  score: 14.2 bits;  conditional E-value: 7e-05
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 +la +a+r  ++dd + ++ +a++++   P a+e  ++ +++++ +g+ ++A   +++a+
  CCD25599.1 427 QLACLAYRESKFDDCETLFSEARRKF---PTAPEVPNFFAEVLADRGESEKAMKEFDKAI 483
                 689***********************...8888899999999999999999997777776 PP

  == domain 6  score: 23.7 bits;  conditional E-value: 7.8e-08
      TPR_16  12 dyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraalraa 64 
                 ++ + + +l++a ++d   P+  +A+l+l+++ l+q + +eA++l+++a++ a
  CCD25599.1 515 NFVEGIQLLQEACDKD---PRSEQARLGLAQLKLQQEDIDEAIQLFEEAAELA 564
                 66778899********...99999*************************9876 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.5   0.00029      0.22       1      34 [.     117     149 ..     117     156 .. 0.87
   2 ?    4.9   0.0     0.028        21      19      42 .]     168     191 ..     157     191 .. 0.95
   3 ?   -0.6   0.1       1.5   1.1e+03       6      16 ..     308     318 ..     307     333 .. 0.78
   4 !   24.4   0.4   2.2e-08   1.7e-05      14      39 ..     374     399 ..     374     402 .. 0.95
   5 !   10.3   0.5   0.00057      0.42       1      35 [.     395     429 ..     395     434 .. 0.93
   6 !   11.5   0.0   0.00024      0.18       3      29 ..     465     491 ..     463     492 .. 0.91
   7 !    7.5   0.0    0.0044       3.3      14      41 ..     520     547 ..     516     547 .. 0.90
   8 !    6.5   0.8    0.0091       6.8       5      27 ..     545     567 ..     542     569 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00029
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynL 34 
                 G+++++  k+e+Ai+ Y  Alkl+ d++  y+n+
  CCD25599.1 117 GNELFKTSKFEDAIKYYHYALKLK-DDPIYYSNI 149
                 9**********************7.777777775 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.028
      TPR_11  19 kAlkldPdnaeayynLGlayykqG 42 
                 kAlkl+P++  ++  ++lay ++G
  CCD25599.1 168 KALKLRPTFSKVLMRRALAYEAMG 191
                 8********************998 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 1.5
      TPR_11   6 eqGkyeeAiea 16 
                 +q+k +eAi++
  CCD25599.1 308 SQNKDNEAIKE 318
                 79999999987 PP

  == domain 4  score: 24.4 bits;  conditional E-value: 2.2e-08
      TPR_11  14 ieaYkkAlkldPdnaeayynLGlayy 39 
                 ++++ kAl+l P+n+ +yy++G+ y+
  CCD25599.1 374 LQNFDKALELEPNNPAIYYHRGQSYF 399
                 68999*******************97 PP

  == domain 5  score: 10.3 bits;  conditional E-value: 0.00057
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLG 35 
                 G+ y+  ++ye+A +++ k  +ld++n  ay  L+
  CCD25599.1 395 GQSYFIAQQYEKAGKDFDKVKELDENNIFAYIQLA 429
                 899*************************9998886 PP

  == domain 6  score: 11.5 bits;  conditional E-value: 0.00024
      TPR_11   3 ayyeqGkyeeAieaYkkAlkldPdnae 29 
                 ++ ++G+ e+A++++ kA++l  + +e
  CCD25599.1 465 VLADRGESEKAMKEFDKAIELEAKTPE 491
                 6889*****************999886 PP

  == domain 7  score: 7.5 bits;  conditional E-value: 0.0044
      TPR_11  14 ieaYkkAlkldPdnaeayynLGlayykq 41 
                 i+ +++A++ dP +  a ++L+++ ++q
  CCD25599.1 520 IQLLQEACDKDPRSEQARLGLAQLKLQQ 547
                 8899*****************9987765 PP

  == domain 8  score: 6.5 bits;  conditional E-value: 0.0091
      TPR_11   5 yeqGkyeeAieaYkkAlkldPdn 27 
                  +q +++eAi+ +++A +l  ++
  CCD25599.1 545 LQQEDIDEAIQLFEEAAELAKSY 567
                 5899*************998776 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0026         2       6      45 ..     158     197 ..     120     198 .. 0.96
   2 ?    2.7   0.1      0.24   1.8e+02       3      28 ..     292     317 ..     290     363 .. 0.74
   3 !   11.8   0.2   0.00035      0.26      12      57 ..     375     420 ..     372     429 .. 0.85
   4 !    8.7   0.0    0.0032       2.4       5      58 ..     436     489 ..     432     494 .. 0.87
   5 !   25.5   3.8   1.9e-08   1.4e-05       7      57 ..     516     566 ..     514     574 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0026
      TPR_19   6 dyaeAlalleqalqedpknaearllLAeallalgqldeAe 45 
                 +y+  +++ ++al+  p  + ++++ A a+ a+g++ +A+
  CCD25599.1 158 QYEKVIEYATKALKLRPTFSKVLMRRALAYEAMGNFGDAM 197
                 678889999***************************9996 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.24
      TPR_19   3 aegdyaeAlalleqalqedpknaear 28 
                 a++ +  A++l++  l+++ +n++++
  CCD25599.1 292 ADKSFLKAAELFKDQLSQNKDNEAIK 317
                 67778899********9999977765 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 0.00035
      TPR_19  12 alleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 + + +al+ +p+n+++ +   + ++ + q+++A +  d++ e d +
  CCD25599.1 375 QNFDKALELEPNNPAIYYHRGQSYFIAQQYEKAGKDFDKVKELDEN 420
                 77999****************************7777776666665 PP

  == domain 4  score: 8.7 bits;  conditional E-value: 0.0032
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdd 58 
                  ++++   l+++a  + p  +e+    Ae+l   g+ ++A++  d++ e ++++
  CCD25599.1 436 SKFDDCETLFSEARRKFPTAPEVPNFFAEVLADRGESEKAMKEFDKAIELEAKT 489
                 5666777899************************************99998876 PP

  == domain 5  score: 25.5 bits;  conditional E-value: 1.9e-08
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 + e ++ll++a ++dp ++ arl+LA++ l++ ++deA++l +++ e ++ 
  CCD25599.1 516 FVEGIQLLQEACDKDPRSEQARLGLAQLKLQQEDIDEAIQLFEEAAELAKS 566
                 66779*************************************999987765 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       4.7   3.5e+03       4      25 ..     113     134 ..     110     143 .. 0.74
   2 ?    2.9   0.1      0.34   2.6e+02      16      42 ..     158     184 ..     150     186 .. 0.85
   3 ?    4.1   0.1      0.14     1e+02       3      21 ..     179     197 ..     177     203 .. 0.90
   4 ?    4.0   0.0      0.15   1.1e+02      19      38 ..     298     317 ..     289     323 .. 0.85
   5 ?    4.1   0.0      0.14     1e+02      24      43 ..     377     396 ..     372     397 .. 0.89
   6 ?    4.3   0.0      0.12        91       1      42 [.     388     429 ..     388     429 .. 0.90
   7 ?    4.8   0.0     0.085        63      11      36 ..     432     457 ..     424     458 .. 0.82
   8 !    9.5   0.0    0.0026         2       8      35 ..     463     490 ..     462     498 .. 0.82
   9 !   13.8   0.1   0.00011     0.079      16      44 .]     515     543 ..     512     543 .. 0.93
  10 !   14.7   1.7   5.5e-05     0.041       3      34 ..     536     567 ..     535     576 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 4.7
      TPR_14   4 llalaeallalGdpdeAiallr 25 
                 l++ +  l+   ++++Ai++++
  CCD25599.1 113 LKDKGNELFKTSKFEDAIKYYH 134
                 55666677778899*****997 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.34
      TPR_14  16 dpdeAiallrralalaPddaeawllla 42 
                 ++++ i+++ +al+l P++  ++++ a
  CCD25599.1 158 QYEKVIEYATKALKLRPTFSKVLMRRA 184
                 78999*************999887766 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.14
      TPR_14   3 allalaeallalGdpdeAi 21 
                 +l+++a a++a G++ +A+
  CCD25599.1 179 VLMRRALAYEAMGNFGDAM 197
                 57899***********997 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.15
      TPR_14  19 eAiallrralalaPddaeaw 38 
                 +A++l+++ l+++ d++++ 
  CCD25599.1 298 KAAELFKDQLSQNKDNEAIK 317
                 79**************9875 PP

  == domain 5  score: 4.1 bits;  conditional E-value: 0.14
      TPR_14  24 lrralalaPddaeawlllaq 43 
                 +++al+l P++++++++ +q
  CCD25599.1 377 FDKALELEPNNPAIYYHRGQ 396
                 789************99887 PP

  == domain 6  score: 4.3 bits;  conditional E-value: 0.12
      TPR_14   1 peallalaeallalGdpdeAiallrralalaPddaeawllla 42 
                 p+ ++ +++ ++ ++++++A + ++++ +l+ ++  a+++la
  CCD25599.1 388 PAIYYHRGQSYFIAQQYEKAGKDFDKVKELDENNIFAYIQLA 429
                 67899****************999999999999998888887 PP

  == domain 7  score: 4.8 bits;  conditional E-value: 0.085
      TPR_14  11 llalGdpdeAiallrralalaPddae 36 
                  ++  ++d+ ++l+ +a +++P+ +e
  CCD25599.1 432 AYRESKFDDCETLFSEARRKFPTAPE 457
                 457778****************9987 PP

  == domain 8  score: 9.5 bits;  conditional E-value: 0.0026
      TPR_14   8 aeallalGdpdeAiallrralalaPdda 35 
                 ae+l+ +G+ ++A++ +++a++l  + +
  CCD25599.1 463 AEVLADRGESEKAMKEFDKAIELEAKTP 490
                 899*******************865433 PP

  == domain 9  score: 13.8 bits;  conditional E-value: 0.00011
      TPR_14  16 dpdeAiallrralalaPddaeawlllaql 44 
                 ++ e i+ll++a++++P +++a+l laql
  CCD25599.1 515 NFVEGIQLLQEACDKDPRSEQARLGLAQL 543
                 67799**********************97 PP

  == domain 10  score: 14.7 bits;  conditional E-value: 5.5e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPdd 34 
                 a+l la++ l+++d deAi+l+++a +la + 
  CCD25599.1 536 ARLGLAQLKLQQEDIDEAIQLFEEAAELAKSY 567
                 8999*********************9998765 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.2     0.073        55       7      32 ..     116     141 ..     115     143 .. 0.87
   2 !   10.2   0.4   0.00094       0.7       4      33 ..     146     175 ..     144     176 .. 0.93
   3 ?    4.8   0.0     0.054        40       2      24 ..     178     200 ..     177     204 .. 0.85
   4 ?   -1.5   0.1       5.4   4.1e+03      20      32 ..     292     304 ..     289     306 .. 0.82
   5 ?    1.8   0.0      0.48   3.6e+02      23      34 .]     376     387 ..     374     387 .. 0.87
   6 !   17.3   0.2   5.3e-06    0.0039       3      34 .]     390     421 ..     388     421 .. 0.95
   7 !   11.1   0.1   0.00051      0.38       8      33 ..     463     488 ..     460     489 .. 0.88
   8 !   15.3   0.8   2.3e-05     0.017       3      33 ..     536     566 ..     534     567 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.073
                 HHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldp 32 
                 +g+ ++k+ ++e A++yy  al+l+ 
  CCD25599.1 116 KGNELFKTSKFEDAIKYYHYALKLKD 141
                 6889999***********98888875 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00094
                 HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   4 yynlgsiylklgdyeeAkeyyekaleldpd 33 
                 y n++ +y +l +ye+ +ey  kal+l+p+
  CCD25599.1 146 YSNISACYASLLQYEKVIEYATKALKLRPT 175
                 8899999*********************96 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.054
                 CHHHHHHHHHHHTT-HHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyy 24 
                 +++++ +++y+ +g++  A+  +
  CCD25599.1 178 KVLMRRALAYEAMGNFGDAMFDI 200
                 68999***********9998765 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 5.4
                 HHHHHHHHHHHHH CS
       TPR_8  20 Akeyyekaleldp 32 
                 A +++ ka el +
  CCD25599.1 292 ADKSFLKAAELFK 304
                 8899****99865 PP

  == domain 5  score: 1.8 bits;  conditional E-value: 0.48
                 HHHHHHHHHHH. CS
       TPR_8  23 yyekaleldpdn 34 
                  + kalel+p+n
  CCD25599.1 376 NFDKALELEPNN 387
                 589*******97 PP

  == domain 6  score: 17.3 bits;  conditional E-value: 5.3e-06
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpdn 34 
                 +yy+ g+ y+  ++ye+A + + k+ eld++n
  CCD25599.1 390 IYYHRGQSYFIAQQYEKAGKDFDKVKELDENN 421
                 7****************************986 PP

  == domain 7  score: 11.1 bits;  conditional E-value: 0.00051
                 HHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekaleldpd 33 
                 + ++ + g+ e+A++ + ka+el+ +
  CCD25599.1 463 AEVLADRGESEKAMKEFDKAIELEAK 488
                 6678899****************976 PP

  == domain 8  score: 15.3 bits;  conditional E-value: 2.3e-05
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 a + l+++ l+++d++eA++ +e+a el+++
  CCD25599.1 536 ARLGLAQLKLQQEDIDEAIQLFEEAAELAKS 566
                 56779***********************986 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0       0.3   2.2e+02      45      72 ..     110     137 ..     101     142 .. 0.69
   2 !    8.7   0.4    0.0028       2.1      14      75 ..     121     173 ..     110     175 .. 0.77
   3 ?   -1.4   0.0         4     3e+03       7      22 ..     181     196 ..     177     196 .. 0.58
   4 ?    3.7   0.1       0.1        75      42      75 ..     318     351 ..     289     353 .. 0.83
   5 ?   -1.9   0.0       5.8   4.3e+03      38      50 ..     364     376 ..     358     383 .. 0.50
   6 !   11.7   0.1   0.00031      0.23       5      72 ..     390     449 ..     388     452 .. 0.83
   7 ?    4.4   0.0     0.063        47       9      38 ..     462     491 ..     456     500 .. 0.82
   8 !   20.1   0.8   7.9e-07   0.00059       6      54 ..     537     582 ..     521     593 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.3
      TPR_12  45 attlrnLgrlyralgryeeAlelleeal 72 
                 a +l + g  ++++ ++e+A++++  al
  CCD25599.1 110 AMALKDKGNELFKTSKFEDAIKYYHYAL 137
                 5566677777777777777777774444 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0028
      TPR_12  14 rrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleealaia 75 
                 ++  ++++A+++++ al +       d     +++ n++ +y  l +ye+ +e+ ++al+++
  CCD25599.1 121 FKTSKFEDAIKYYHYALKLK------DD---PIYYSNISACYASLLQYEKVIEYATKALKLR 173
                 56666777777777776666......33...3589*******9999*************997 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 4
      TPR_12   7 nnlaavlrrlgrydeA 22 
                  ++a+++ ++g++ +A
  CCD25599.1 181 MRRALAYEAMGNFGDA 196
                 4566666666666544 PP

  == domain 4  score: 3.7 bits;  conditional E-value: 0.1
      TPR_12  42 pltattlrnLgrlyralgryeeAlelleealaia 75 
                 + ta++l   g+ly++ +++ +A++  + a+++ 
  CCD25599.1 318 EKTAIALEYSGILYYMKNETLKAHDSIKSAIELH 351
                 579**********************999999875 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 5.8
      TPR_12  38 Gpdhpltattlrn 50 
                 G d+  t+++l+n
  CCD25599.1 364 GSDSTTTSEYLQN 376
                 5555555555544 PP

  == domain 6  score: 11.7 bits;  conditional E-value: 0.00031
      TPR_12   5 alnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                 +++++++ ++ +++y++A + ++k+ e+      +++   + +++ L+ l ++  ++++ + l+ ea 
  CCD25599.1 390 IYYHRGQSYFIAQQYEKAGKDFDKVKELD-----ENN---IFAYIQLACLAYRESKFDDCETLFSEAR 449
                 7889*********************8887.....554...8889999988888778888777777775 PP

  == domain 7  score: 4.4 bits;  conditional E-value: 0.063
      TPR_12   9 laavlrrlgrydeAlellekaleiarrllG 38 
                  a+vl+ +g+ ++A + ++ka+e+  ++++
  CCD25599.1 462 FAEVLADRGESEKAMKEFDKAIELEAKTPE 491
                 689999999999999999999999888765 PP

  == domain 8  score: 20.1 bits;  conditional E-value: 7.9e-07
      TPR_12   6 lnnlaavlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrl 54 
                    la++ +++++ deA++l+e+a e+a+++  +++ l att    + +
  CCD25599.1 537 RLGLAQLKLQQEDIDEAIQLFEEAAELAKSY--EEK-LQATTFAEAAKI 582
                 4578999999999999999999999999777..555.577777666665 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00019      0.14       2      32 ..     166     196 ..     165     198 .. 0.93
   2 ?   -1.3   0.0         5   3.7e+03       5      19 ..     347     362 ..     345     362 .. 0.86
   3 !   19.1   0.2   1.5e-06    0.0011       2      32 ..     377     407 ..     376     409 .. 0.95
   4 ?    2.5   0.0      0.32   2.4e+02       7      32 ..     416     441 ..     411     443 .. 0.81
   5 ?   -0.3   0.0       2.4   1.8e+03      20      32 ..     463     475 ..     459     484 .. 0.54
   6 ?    6.1   0.1     0.022        16       1      34 []     522     555 ..     522     555 .. 0.95

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00019
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                  +kal+l P+ ++++  +A +++  G++++A
  CCD25599.1 166 ATKALKLRPTFSKVLMRRALAYEAMGNFGDA 196
                 68*********************99999887 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 5
      TPR_17   5 aleldPn.nadaynnL 19 
                 a+el+P  n++ y+ L
  CCD25599.1 347 AIELHPRvNSYIYQSL 362
                 89****9999999865 PP

  == domain 3  score: 19.1 bits;  conditional E-value: 1.5e-06
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtA 32 
                 + kalel+Pnn+  y+ +++ +  + ++++A
  CCD25599.1 377 FDKALELEPNNPAIYYHRGQSYFIAQQYEKA 407
                 78**************************998 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.32
      TPR_17   7 eldPnnadaynnLAelllknGdlmtA 32 
                 eld nn  ay +LA l ++  +++++
  CCD25599.1 416 ELDENNIFAYIQLACLAYRESKFDDC 441
                 7899***********98776666655 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 2.4
      TPR_17  20 AelllknGdlmtA 32 
                 Ae+l+ +G++++A
  CCD25599.1 463 AEVLADRGESEKA 475
                 4555555555555 PP

  == domain 6  score: 6.1 bits;  conditional E-value: 0.022
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 l+++a ++dP +  a   LA+l l++ d ++A+q
  CCD25599.1 522 LLQEACDKDPRSEQARLGLAQLKLQQEDIDEAIQ 555
                 57999***************************98 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   2.2     0.026        20       4      75 ..     125     196 ..     122     202 .. 0.82
   2 ?   -2.3   0.1       7.2   5.4e+03      29      49 ..     326     347 ..     293     359 .. 0.52
   3 !   15.5   1.2   2.1e-05     0.015      12      81 ..     377     447 ..     370     448 .. 0.85
   4 ?    0.3   0.0       1.1   8.5e+02      28      56 ..     461     490 ..     451     498 .. 0.84
   5 !   16.4   0.0     1e-05    0.0077      38      81 ..     515     559 ..     513     560 .. 0.94

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.026
                 -HHHHHHHHHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHH CS
      ANAPC3   4 nyknAiflaerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeA 75 
                 ++++Ai ++  +l + +++p      + c+ ++ qy++ +e++ ka kl+++  ++++  A ++ +++++ +A
  CCD25599.1 125 KFEDAIKYYHYAL-KLKDDPIYYSNISACYASLLQYEKVIEYATKAlKLRPTFSKVLMRRALAYEAMGNFGDA 196
                 6788888888888.44444444444599******************999999999999999999999999888 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 7.2
                 H.HHHHHHTT-HHHHHHHHHCT CS
      ANAPC3  29 l.AlclylngqykrAyellrka 49 
                 + +  +y  ++  +A++ +++a
  CCD25599.1 326 YsGILYYMKNETLKAHDSIKSA 347
                 3344455555566666665555 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 2.1e-05
                 HHHHH.HHH--HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  12 aerllaaetespedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 ++++l+ e+++p   y  +++++ ++qy++A + ++k  +l+++++ + + +A  ++  +k++++++++++
  CCD25599.1 377 FDKALELEPNNPAIYYHRGQSYFIAQQYEKAGKDFDKVkELDENNIFAYIQLACLAYRESKFDDCETLFSE 447
                 688887788777666666********************999999998888888888999********9976 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 1.1
                 HHHHHHHHTT-HHHHHHHHHCT.SHHHC-H CS
      ANAPC3  28 llAlclylngqykrAyellrka.klnsksl 56 
                 ++A++l  +g+ ++A++ ++ka +l+ k++
  CCD25599.1 461 FFAEVLADRGESEKAMKEFDKAiELEAKTP 490
                 579999999999999999999988877765 PP

  == domain 5  score: 16.4 bits;  conditional E-value: 1e-05
                 -HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  38 qykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                 ++ + ++ll++a +++++s+++r+ +Aq  l+++ ++eAi+++e+
  CCD25599.1 515 NFVEGIQLLQEAcDKDPRSEQARLGLAQLKLQQEDIDEAIQLFEE 559
                 577889************************************997 PP

>> TPR_MalT  MalT-like TPR region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.2   3.1e+03      79     112 ..     109     142 ..     101     143 .. 0.83
   2 ?    0.9   0.0      0.31   2.3e+02      15      47 ..     157     191 ..     150     201 .. 0.83
   3 ?   -0.4   0.0      0.76   5.7e+02      95     154 ..     295     353 ..     275     362 .. 0.69
   4 !   23.4   0.5   4.4e-08   3.3e-05      87     210 ..     463     583 ..     457     602 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 4.2
    TPR_MalT  79 allallqqaeilvaqGrLheAletyeqalqlate 112
                 +++al + ++ l++  ++++A++ y+ al+l ++
  CCD25599.1 109 WAMALKDKGNELFKTSKFEDAIKYYHYALKLKDD 142
                 678888888899999999**********999765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.31
    TPR_MalT  15 gdaeralelArqALallp..eddllariaatavlG 47 
                  + e+++e+A +AL+l p  ++ l+ r++a+ ++G
  CCD25599.1 157 LQYEKVIEYATKALKLRPtfSKVLMRRALAYEAMG 191
                 578999**********9944577888899999999 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.76
    TPR_MalT  95 rLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleq 154
                 ++ +A+e++++ l + ++++  + +   ++l + + l+y +n+  +A++  + +iel  +
  CCD25599.1 295 SFLKAAELFKDQLSQNKDNEAIK-EKTAIALEYSGILYYMKNETLKAHDSIKSAIELHPR 353
                 55666677777776555555544.344455566688888888888888888888877655 PP

  == domain 4  score: 23.4 bits;  conditional E-value: 4.4e-08
    TPR_MalT  87 aeilvaqGrLheAletyeqalqlateqglqqlplvgfllvlladllyEwndLeeAeqhlqeGielleql..epeaaldayvllarialaqGdleeAetl 183
                 ae+l  +G+ ++A++ + +a++l  ++ ++ + +   +l++ a ll+ +   e       eGi+ll++   +  ++ +a++ la+++l+q+d++eA +l
  CCD25599.1 463 AEVLADRGESEKAMKEFDKAIELEAKTPEE-IHVGIAPLIGKATLLISKPTVEN----FVEGIQLLQEAcdKDPRSEQARLGLAQLKLQQEDIDEAIQL 556
                 577778888888888888888887766666.34555677788888888887765....789*******8855578889********************* PP

    TPR_MalT 184 lekaeelaresnfhvdwlanaeevrvr 210
                 +e+a ela++ + ++++++ ae+++++
  CCD25599.1 557 FEEAAELAKSYEEKLQATTFAEAAKIQ 583
                 **********99999999999988875 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       8.3   6.2e+03       9      29 ..     124     144 ..     120     145 .. 0.76
   2 !   12.0   0.0   0.00024      0.18       3      58 ..     151     206 ..     149     222 .. 0.85
   3 ?    5.9   0.0     0.019        14      16      58 ..     375     417 ..     369     426 .. 0.86
   4 ?    0.4   0.0      0.95   7.1e+02      36      60 ..     463     487 ..     462     495 .. 0.79
   5 ?    1.7   0.8      0.38   2.8e+02      26      60 ..     531     565 ..     522     605 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 8.3
       TPR_9   9 edweralavverllllaPddp 29 
                  ++e a++++   l l+ d++
  CCD25599.1 124 SKFEDAIKYYHYALKLKDDPI 144
                 568888999888888887765 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00024
       TPR_9   3 aiaireedweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylal 58 
                 a++++  ++e+ ++++   l l P     ++ R+l+++ +G++  A++d  a+  +
  CCD25599.1 151 ACYASLLQYEKVIEYATKALKLRPTFSKVLMRRALAYEAMGNFGDAMFDISACSLN 206
                 67777889999**************************************9998754 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.019
       TPR_9  16 avverllllaPddpeerrdRGlllaqlGclsaAladLeaylal 58 
                 +  +  l l P+ p  ++ RG+ ++   ++++A +d++   +l
  CCD25599.1 375 QNFDKALELEPNNPAIYYHRGQSYFIAQQYEKAGKDFDKVKEL 417
                 5567789****************************99876555 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.95
       TPR_9  36 GlllaqlGclsaAladLeaylalap 60 
                 + +la +G  ++A+++++ +++l+ 
  CCD25599.1 463 AEVLADRGESEKAMKEFDKAIELEA 487
                 5688999999999999999997765 PP

  == domain 5  score: 1.7 bits;  conditional E-value: 0.38
       TPR_9  26 PddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                 P++ + r+  ++l  q++++ +A++ +e +++la 
  CCD25599.1 531 PRSEQARLGLAQLKLQQEDIDEAIQLFEEAAELAK 565
                 55556677789999999999999999999998876 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0061       4.6      11      32 ..     122     143 ..     120     143 .. 0.87
   2 ?    5.0   0.0     0.037        28       2      30 ..     146     174 ..     146     180 .. 0.81
   3 ?   -1.4   0.0       4.1   3.1e+03       4      18 ..     182     196 ..     179     197 .. 0.80
   4 ?   -1.9   0.0       6.4   4.8e+03      17      27 ..     298     308 ..     298     316 .. 0.74
   5 ?   -1.2   0.0       3.6   2.7e+03      12      21 ..     374     383 ..     370     383 .. 0.84
   6 ?    0.5   0.0       1.1     8e+02       8      29 ..     465     486 ..     463     493 .. 0.69
   7 !   11.0   1.0   0.00045      0.34       4      33 ..     539     568 ..     536     571 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0061
       TPR_7  11 rlGdyeeAielyeqsLaltkdp 32 
                 +  ++e+Ai++y  +L l +dp
  CCD25599.1 122 KTSKFEDAIKYYHYALKLKDDP 143
                 6789**********99999887 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.037
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLaltk 30 
                 ++n+  +y +l +ye+ ie+ +++L l+ 
  CCD25599.1 146 YSNISACYASLLQYEKVIEYATKALKLRP 174
                 567888899999***********777765 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 4.1
       TPR_7   4 nLarlysrlGdyeeA 18 
                 + a +y+++G++ +A
  CCD25599.1 182 RRALAYEAMGNFGDA 196
                 56889*****99777 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 6.4
       TPR_7  17 eAielyeqsLa 27 
                 +A+el++ +L 
  CCD25599.1 298 KAAELFKDQLS 308
                 79999999884 PP

  == domain 5  score: -1.2 bits;  conditional E-value: 3.6
       TPR_7  12 lGdyeeAiel 21 
                 l+++++A+el
  CCD25599.1 374 LQNFDKALEL 383
                 89*****996 PP

  == domain 6  score: 0.5 bits;  conditional E-value: 1.1
       TPR_7   8 lysrlGdyeeAielyeqsLalt 29 
                 +  ++G+ e+A + + ++++l+
  CCD25599.1 465 VLADRGESEKAMKEFDKAIELE 486
                 5667888888888888865554 PP

  == domain 7  score: 11.0 bits;  conditional E-value: 0.00045
       TPR_7   4 nLarlysrlGdyeeAielyeqsLaltkdpe 33 
                  La+l  ++ d +eAi+l+e++ +l+k+ e
  CCD25599.1 539 GLAQLKLQQEDIDEAIQLFEEAAELAKSYE 568
                 58999999*************999998865 PP

>> TPR_21  Tetratricopeptide repeat-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00091      0.68       1      39 [.       8      46 ..       8      78 .. 0.84
   2 ?    2.2   0.0      0.17   1.3e+02     135     177 ..     100     141 ..      96     155 .. 0.88
   3 ?   -1.4   0.3       2.1   1.6e+03      38      86 ..     298     343 ..     287     349 .. 0.63
   4 ?    4.2   0.0      0.04        30      85     177 ..     397     487 ..     355     497 .. 0.76
   5 !    9.5   0.8   0.00097      0.72      65     140 ..     523     561 ..     504     586 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00091
      TPR_21  1 KawWkengklilvgvvlalvglaGwqgwqdyqeeqaeeA 39
                K + ++n ++i++ ++++  ++ ++ ++++ q +q+e+ 
  CCD25599.1  8 KGFVSRNRTAIIATIAAGTTAVGAYYYYTQLQAQQQENV 46
                678999*****************************9975 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.17
      TPR_21 135 tLeakkeeafaalvaelrGDilvaqgkldeAraaYqaAlaale 177
                  L++++++++a + ++ +G+ l+++ k+++A + Y+ Al+ ++
  CCD25599.1 100 SLTEETKNEWAMALKD-KGNELFKTSKFEDAIKYYHYALKLKD 141
                 6888999999888887.9********************98665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 2.1
      TPR_21  38 eAsalYqqlqeaveakdaakakeaaeeladeyggtaYaalaaLllAkaa 86 
                 +A++l++  ++  ++kd++ a ++ +++a ey+g  Y    + l+A+ +
  CCD25599.1 298 KAAELFKDQLS--QNKDNE-AIKEKTAIALEYSGILYYMKNETLKAHDS 343
                 45555555443..344444.55566778888888888777776666655 PP

  == domain 4  score: 4.2 bits;  conditional E-value: 0.04
      TPR_21  85 aaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakkeeaf..aalvaelrGDilvaqgkldeAraaYqaAlaale 177
                 + + a+++++A + +++v e  +++     a ++La +   e k+d+  ++ ++  + +f  a +v +   ++l+ +g+ ++A +++++A++  +
  CCD25599.1 397 SYFIAQQYEKAGKDFDKVKELDENN---IFAYIQLACLAYRESKFDDCETLFSE-ARRKFptAPEVPNFFAEVLADRGESEKAMKEFDKAIELEA 487
                 5566777788888887777666555...67888999999999999997666644.4444422567888999999999999999999999987655 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.00097
      TPR_21  65 ladeyggtaYaalaaLllAkaaveagdlaaAkaqLewvlekakdeelkalarlRLarvllaekkydeAlktLeakk 140
                 l+++ ++ +  +                                      arl La++ l+++++deA+++ e++ 
  CCD25599.1 523 LQEACDKDPRSE-------------------------------------QARLGLAQLKLQQEDIDEAIQLFEEAA 561
                 344444444444.....................................456666666666666666666554432 PP

>> HrpB1_HrpK  Bacterial type III secretion protein (HrpB1_HrpK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       7.2   5.4e+03      55      91 ..     290     326 ..     286     328 .. 0.81
   2 !    7.2   0.0     0.005       3.7       6      71 ..     417     482 ..     412     495 .. 0.85
   3 !    8.5   0.1     0.002       1.5      41      76 ..     530     565 ..     502     606 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.2
  HrpB1_HrpK  55 liergrweeAlrlLreveaeasgtpyakaLlAlcLaa 91 
                 +i+ +++  A+ l+++   +++  ++ k+  A++L++
  CCD25599.1 290 QIADKSFLKAAELFKDQLSQNKDNEAIKEKTAIALEY 326
                 6888889999999999888888888888888888875 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.005
  HrpB1_HrpK   6 cskelvggLievlslalasedtedaellLdalrvLrPevaeldllegvlliergrweeAlrlLrev 71 
                 ++++ + + i+++ la ++ +++d e+l  + r+  P ++e+  + + +l  rg+ e A++ + + 
  CCD25599.1 417 LDENNIFAYIQLACLAYRESKFDDCETLFSEARRKFPTAPEVPNFFAEVLADRGESEKAMKEFDKA 482
                 6667778899*********************************99999999999999999877654 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.002
  HrpB1_HrpK  41 rPevaeldllegvlliergrweeAlrlLreveaeas 76 
                  P+ ++++l  ++l +++++++eA++l++e  + a+
  CCD25599.1 530 DPRSEQARLGLAQLKLQQEDIDEAIQLFEEAAELAK 565
                 69999999999*******************985443 PP

>> Exonuc_VII_S  Exonuclease VII small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       8.9   6.6e+03      23      35 ..     127     139 ..     125     140 .. 0.75
   2 ?   -1.5   0.3       3.6   2.7e+03      23      35 ..     473     485 ..     473     488 .. 0.86
   3 ?   -1.5   0.0       3.7   2.8e+03      26      39 ..     513     526 ..     512     529 .. 0.81
   4 !   18.0   2.4   3.1e-06    0.0023      13      45 ..     541     573 ..     540     575 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 8.9
  Exonuc_VII_S  23 eeslklyeeGvkL 35 
                   e+++k+y  + kL
    CCD25599.1 127 EDAIKYYHYALKL 139
                   7888888877776 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.6
  Exonuc_VII_S  23 eeslklyeeGvkL 35 
                   e+++k++ ++++L
    CCD25599.1 473 EKAMKEFDKAIEL 485
                   7899999999998 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 3.7
  Exonuc_VII_S  26 lklyeeGvkLlkeC 39 
                   ++ + eG++Ll+e+
    CCD25599.1 513 VENFVEGIQLLQEA 526
                   578899****9985 PP

  == domain 4  score: 18.0 bits;  conditional E-value: 3.1e-06
  Exonuc_VII_S  13 ekLEsgelsLeeslklyeeGvkLlkeCekkLde 45 
                   ++L  ++ +++e+++l+ee+++L+k  e+kL++
    CCD25599.1 541 AQLKLQQEDIDEAIQLFEEAAELAKSYEEKLQA 573
                   567777889**********************97 PP

>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       3.1   2.3e+03      26      36 ..     129     139 ..     114     141 .. 0.78
   2 ?    0.9   0.0       1.1   8.1e+02      22      37 ..     515     530 ..     505     531 .. 0.84
   3 !   10.6   0.2   0.00097      0.73       5      36 ..     536     563 ..     535     565 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 3.1
        Sel1  26 AiewyekAAeq 36 
                 Ai++y+ A ++
  CCD25599.1 129 AIKYYHYALKL 139
                 9****999876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 1.1
        Sel1  22 DpekAiewyekAAeqG 37 
                 +  ++i++++ A++++
  CCD25599.1 515 NFVEGIQLLQEACDKD 530
                 7899*********986 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00097
        Sel1   5 yrLGmfylylnGlgvpkDpekAiewyekAAeq 36 
                 +rLG  ++ l+ +    D+++Ai+++e AAe+
  CCD25599.1 536 ARLG--LAQLKLQ--QEDIDEAIQLFEEAAEL 563
                 6777..4336664..56*************98 PP

>> Peptidase_S49_N  Peptidase family S49 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.9   6.5e-06    0.0048      50     119 ..      35     105 ..      31     116 .. 0.71
   2 ?   -0.3   1.0       1.4     1e+03      33      85 ..     530     582 ..     512     602 .. 0.68

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 6.5e-06
  Peptidase_S49_N  50 ykelkeeleealldeeelkaaekkekkeekeekkaekk.kakeeeekkrvfvldFkGdikAsevesLreei 119
                      y++l+ + +e++  +e++ + + ++k+++k++ k++kk ++++ ++kk ++++d +G+ + s+++sL ee 
       CCD25599.1  35 YTQLQAQQQENVRPKEDTDKSTATKKEKKKSKGKESKKpQEDTPTTKKPIYLVDSNGEPNLSDIDSLTEET 105
                      566666666666666655555555555555555555440445589999********************996 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.4
  Peptidase_S49_N  33 kkkkekgelevtkLneeykelkeeleealldeeelkaaekkekkeekeekkae 85 
                        ++e+ +l + +L+ + ++++e+++      e +k++e k + +  +e+ + 
       CCD25599.1 530 DPRSEQARLGLAQLKLQQEDIDEAIQLFEEAAELAKSYEEKLQATTFAEAAKI 582
                      34478889999999999999999998877777777776666555544444333 PP

>> TPR_20  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0079       5.9       5      42 ..     371     408 ..     367     421 .. 0.90
   2 ?   -1.2   0.0       3.5   2.6e+03      28      45 ..     462     479 ..     436     489 .. 0.79
   3 ?   13.2   2.3   0.00011     0.085       8      56 ..     520     568 ..     517     578 .. 0.86
   4 ?   -1.3   0.0       3.9   2.9e+03       2      20 ..     573     591 ..     572     603 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0079
      TPR_20   5 apelaeleaalaanpddldarldlAlallaagryeeAl 42 
                 ++ l+++++al+ +p++ ++ +   + ++ a++ye+A 
  CCD25599.1 371 SEYLQNFDKALELEPNNPAIYYHRGQSYFIAQQYEKAG 408
                 5678999*****************************95 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.5
      TPR_20  28 lAlallaagryeeAleqL 45 
                  A++l+ +g+ e+A++++
  CCD25599.1 462 FAEVLADRGESEKAMKEF 479
                 588888999999998876 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 0.00011
      TPR_20   8 laeleaalaanpddldarldlAlallaagryeeAleqLleilkrdrkwe 56 
                 ++ l++a+ ++p   +arl lA++ l++++ +eA++++ e  +  +++e
  CCD25599.1 520 IQLLQEACDKDPRSEQARLGLAQLKLQQEDIDEAIQLFEEAAELAKSYE 568
                 6779*******************************98877766666665 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 3.9
      TPR_20   2 aadapelaeleaalaanpd 20 
                 a++ +e a++++++ a+p+
  CCD25599.1 573 ATTFAEAAKIQKRIRADPA 591
                 677789999********97 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.2   9.3e+02       1      26 [.     109     134 ..     109     139 .. 0.87
   2 ?   -2.2   0.1       5.7   4.3e+03       9      21 ..     184     196 ..     181     197 .. 0.85
   3 ?    4.7   0.0     0.038        28       9      31 ..     463     485 ..     460     494 .. 0.89
   4 ?    8.0   0.6    0.0036       2.7       8      32 ..     540     564 ..     536     566 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.2
      TPR_10   1 tAsslnNLanalrqrgrydeAealle 26 
                 +A++l + +n l+++ ++++A ++++
  CCD25599.1 109 WAMALKDKGNELFKTSKFEDAIKYYH 134
                 8999999999999*********9997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 5.7
      TPR_10   9 analrqrgrydeA 21 
                 a a+ ++g++ +A
  CCD25599.1 184 ALAYEAMGNFGDA 196
                 7899999999998 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.038
      TPR_10   9 analrqrgrydeAealleealai 31 
                 a +l +rg+ ++A++ +++a+++
  CCD25599.1 463 AEVLADRGESEKAMKEFDKAIEL 485
                 7899*****************97 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.0036
      TPR_10   8 LanalrqrgrydeAealleealair 32 
                 La +  q+ + deA +l+eea ++ 
  CCD25599.1 540 LAQLKLQQEDIDEAIQLFEEAAELA 564
                 788889***************9986 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       5.9   4.4e+03       8      31 ..     151     174 ..     148     175 .. 0.79
   2 ?    4.1   0.2      0.12        87       2      19 ..     179     196 ..     178     226 .. 0.77
   3 ?    6.0   0.1     0.029        22       3      27 ..     391     415 ..     389     418 .. 0.89
   4 ?    3.3   0.1      0.21   1.6e+02       2      32 ..     424     454 ..     423     455 .. 0.82
   5 ?    1.9   0.1      0.56   4.2e+02       6      28 ..     469     484 ..     463     488 .. 0.57
   6 ?    9.4   0.5    0.0023       1.7       2      27 ..     536     561 ..     535     566 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 5.9
                 HHHHH.HHHHHHHHHHHHHHHHH-T CS
       TPR_6   8 lsyrk.lgdtdkAlealerlikeYP 31 
                  +y + l +++k +e+  + +k  P
  CCD25599.1 151 ACYASlL-QYEKVIEYATKALKLRP 174
                 5888877.99999999999988877 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkA 19 
                 +l+++al+y+++g+  +A
  CCD25599.1 179 VLMRRALAYEAMGNFGDA 196
                 689999999998776555 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.029
                 HHHHHHHHH.HHHHHHHHHHHHHHHH CS
       TPR_6   3 lyklalsyr.klgdtdkAlealerli 27 
                 +y++++sy+ ++ +++kA + ++++ 
  CCD25599.1 391 YYHRGQSYFiAQ-QYEKAGKDFDKVK 415
                 79*******889.*****99999986 PP

  == domain 4  score: 3.3 bits;  conditional E-value: 0.21
                 HHHHHH.HHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   2 Alykla.lsyrklgdtdkAlealerlikeYPd 32 
                 A+ +la l+yr+  + d+  +++ + ++++P+
  CCD25599.1 424 AYIQLAcLAYRES-KFDDCETLFSEARRKFPT 454
                 6678884555556.*****************6 PP

  == domain 5  score: 1.9 bits;  conditional E-value: 0.56
                 HHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealerlik 28 
                 ++       +++kA++ +++ i+
  CCD25599.1 469 RG-------ESEKAMKEFDKAIE 484
                 34.......55555555555554 PP

  == domain 6  score: 9.4 bits;  conditional E-value: 0.0023
                 HHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerli 27 
                 A + la++ +++ d d+A++++e+  
  CCD25599.1 536 ARLGLAQLKLQQEDIDEAIQLFEEAA 561
                 6777777777767**********875 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.98   7.3e+02      35      85 ..     295     360 ..     281     381 .. 0.64
   2 ?   10.7   2.0   0.00059      0.44      22      85 ..     543     602 ..     495     607 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.98
                      HHHHHHHHHHHHHHHHHHHH.T-HHH..............HHHHHHHHHHHT-HHHHHHHHHHHHH CS
  PEP-utilisers_N  35 rleeAlekvreelealaeka.lgeee..............aaifeahlmlleDpelleeveerIre 85 
                       + +A e  +++l++ +++   +e+                + ++ah ++ +  el  +v++ I +
       CCD25599.1 295 SFLKAAELFKDQLSQNKDNEaIKEKTaialeysgilyymkNETLKAHDSIKSAIELHPRVNSYIYQ 360
                      578899999999977554443222212233334555555566777777777777777777776664 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00059
                      ---G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH.T-HHHHHHHHHHHHHHT-HHHHHHHHHHHHH CS
  PEP-utilisers_N  22 eeveaedveaelerleeAlekvreelealaeka.lgeeeaaifeahlmlleDpelleeveerIre 85 
                       ++++ed+++ ++ +eeA e +++  e+l++ + +     +  + ++ +  Dp++ +++++ I++
       CCD25599.1 543 LKLQQEDIDEAIQLFEEAAELAKSYEEKLQATTfA-----EAAKIQKRIRADPAMDAKIRQTIEQ 602
                      46788999999999999999999999999877743.....46789999*************9996 PP

>> TPR_4  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1       5.1   3.8e+03       7      20 ..     183     196 ..     179     197 .. 0.85
   2 ?    2.9   0.0      0.31   2.3e+02       8      20 ..     463     475 ..     463     476 .. 0.93
   3 ?    6.3   0.2     0.024        18       2      26 .]     535     559 ..     535     559 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 5.1
       TPR_4   7 LArallalGdldeA 20 
                 +A a+ a G++ +A
  CCD25599.1 183 RALAYEAMGNFGDA 196
                 8999*****99988 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.31
       TPR_4   8 ArallalGdldeA 20 
                 A++l+++G+++ A
  CCD25599.1 463 AEVLADRGESEKA 475
                 89********998 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.024
       TPR_4   2 rallaLArallalGdldeAraller 26 
                 +a+l+LA++ l++ d deA +l+e+
  CCD25599.1 535 QARLGLAQLKLQQEDIDEAIQLFEE 559
                 59*****************999986 PP

>> DUF3856  Domain of Unknown Function (DUF3856)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.13     1e+02      91     127 ..     101     137 ..      96     142 .. 0.86
   2 ?    2.1   0.1      0.25   1.9e+02      54      83 ..     142     171 ..     140     204 .. 0.85
   3 ?    1.6   0.1      0.35   2.6e+02     108     131 ..     464     487 ..     461     494 .. 0.82
   4 ?    1.4   0.2      0.41   3.1e+02      69     110 ..     541     582 ..     533     605 .. 0.53

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.13
                 TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH CS
     DUF3856  91 leqdeGklWiaavfsravaleelGrkdealkafrmag 127
                 l ++  + W  a+ +++  l ++ + ++a+k+++ a 
  CCD25599.1 101 LTEETKNEWAMALKDKGNELFKTSKFEDAIKYYHYAL 137
                 56667778************************99886 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.25
                 HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
     DUF3856  54 dalchaglsealaklgrydealesadkalr 83 
                 d + ++ +s  +a l +y++ +e a kal+
  CCD25599.1 142 DPIYYSNISACYASLLQYEKVIEYATKALK 171
                 567788999999999999999999999987 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.35
                 HHHHHTT-HHHHHHHHHHHHHHHH CS
     DUF3856 108 valeelGrkdealkafrmagemia 131
                   l++ G +++a+k+f +a e+ a
  CCD25599.1 464 EVLADRGESEKAMKEFDKAIELEA 487
                 568899*************99855 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.41
                 T-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHH CS
     DUF3856  69 grydealesadkalryfnrrGeleqdeGklWiaavfsraval 110
                  + +   e +d+a++ f+   el +   ++  a+ f  a+ +
  CCD25599.1 541 AQLKLQQEDIDEAIQLFEEAAELAKSYEEKLQATTFAEAAKI 582
                 444444444455555555555555444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1887  (0.105248); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                        87  (0.00485247); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.49
# Mc/sec: 3768.70
//
Query:       CCD25600.1  [L=128]
Description: hypothetical protein NDAI_0F02820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.8e-13   49.4   5.4    7.6e-13   48.8   5.4    1.2  1  Ribosomal_L35p  Ribosomal protein L35


Domain annotation for each model (and alignments):
>> Ribosomal_L35p  Ribosomal protein L35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   5.4   4.2e-17   7.6e-13       3      61 .]      68     125 ..      68     125 .. 0.99

  Alignments for each domain:
  == domain 1  score: 48.8 bits;  conditional E-value: 4.2e-17
  Ribosomal_L35p   3 mKThkgakKRfkvtgsGkikrkkagkrHlltkKstkrkrrlrktalvskadakrlkklL 61 
                     mKThkga+KR+++ + G +kr+ ag++H +  +s++  ++l + + ++++++k+lk++L
      CCD25600.1  68 MKTHKGAAKRWRKSAQG-FKRGIAGRNHGNVGWSHRYLNKLTGRKEADPTHVKHLKRML 125
                     9****************.****************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 932.80
//
Query:       CCD25601.1  [L=979]
Description: hypothetical protein NDAI_0F02830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-54  180.6   0.1    3.6e-35  119.8   0.0    3.6  3  PDZ_1          PDZ-like domain
    1.4e-24   87.7   0.0    1.3e-20   74.8   0.0    2.4  2  Trypsin_2      Trypsin-like peptidase domain
    3.9e-14   52.2   0.4    3.9e-07   29.8   0.1    4.1  5  PDZ_6          PDZ domain
    1.1e-10   41.7   1.8      0.011   16.0   0.2    4.5  4  PDZ_2          PDZ domain
    4.4e-10   39.8   0.0    6.1e-06   26.5   0.0    2.7  2  PDZ            PDZ domain
    6.7e-06   26.0   0.3      0.026   14.5   0.1    3.6  4  Tricorn_PDZ    Tricorn protease PDZ domain
    0.00021   21.2   0.0     0.0015   18.4   0.0    2.2  2  Trypsin        Trypsin
  ------ inclusion threshold ------
      0.013   15.1   0.1      0.032   13.8   0.1    1.6  1  DUF31          Putative peptidase (DUF31)
       0.13   12.1   0.1       0.34   10.7   0.1    1.6  1  Peptidase_S7   Peptidase S7, Flavivirus NS3 serine protease
       0.22   10.1   0.0       0.59    8.7   0.0    1.7  2  Peptidase_S46  Peptidase S46


Domain annotation for each model (and alignments):
>> PDZ_1  PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.8   0.0     2e-38   3.6e-35       1      78 []     372     449 ..     372     449 .. 0.99
   2 ?    0.1   0.0      0.47   8.4e+02      47      71 ..     789     813 ..     768     815 .. 0.71
   3 !   55.6   0.0   2.2e-18   3.9e-15       4      77 ..     850     924 ..     849     925 .. 0.93

  Alignments for each domain:
  == domain 1  score: 119.8 bits;  conditional E-value: 2e-38
       PDZ_1   1 aitpsrfvevaGatfhdLsyqlarsyaipvkgvyvseasgsfklsskekkgviitsinnqptpnLdefievvkkipdn 78 
                 aitp+r+vev+Gatf++Lsyq+ar ya+pvkgv++s+asgsf+++++ek g+ii+ i+n++tp+Ld+fi v+k +pd+
  CCD25601.1 372 AITPDRYVEVCGATFNELSYQMARFYALPVKGVFLSSASGSFNFDNREKVGWIIDAIDNKETPDLDTFIGVMKYVPDR 449
                 6***************************************************************************96 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.47
       PDZ_1  47 kekkgviitsinnqptpnLdefiev 71 
                 k + g +i s+nn+ +  +d+++ v
  CCD25601.1 789 KLQTGDVILSVNNKLVTVMDDLAGV 813
                 2778999*******99999988766 PP

  == domain 3  score: 55.6 bits;  conditional E-value: 2.2e-18
       PDZ_1   4 psrfvevaGatfhdLsyqlarsyaipvk..gvyvseasgsfklsskekkgviitsinnqptpnLdefievvkkipd 77 
                 ++ +v ++G+++++ +++++r+ ++ ++  ++ + +++ s++l+++++ +++it++n+++tp+Ld+f++vvk+ipd
  CCD25601.1 850 TDHIVIFSGCILQE-PHHAVRQAMVDIPkgVYCTFRGESSPALQYGISATNFITHVNEEETPDLDTFLKVVKEIPD 924
                 6889**********.********9999994555679***************************************9 PP

>> Trypsin_2  Trypsin-like peptidase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   7.4e-24   1.3e-20       1     150 []      84     230 ..      84     230 .. 0.89
   2 !   10.7   0.0   0.00042      0.76      31     137 ..     574     685 ..     548     697 .. 0.71

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 7.4e-24
   Trypsin_2   1 GsGflvgsd.glilTnaHvvdsadgaavkaikkkveeagadgrevpakvvaadpelDlAllkv..ssderaglpplplgpsealkggepvyvvGyplgg 96 
                 ++Gf+v+s+ g+ilTn+Hvv+    +          +++++ +e++++++++dp +D+ +lk+  ++   +++++l+l+ps a  g+ ++ vvG+ + g
  CCD25601.1  84 ATGFVVDSElGIILTNRHVVGAGPFVGY--------VVFDNHEECDVTPIYRDPVHDFGFLKFdpKKIKYSEIQALQLKPSLAKIGS-EIRVVGN-DAG 172
                 69*******76*********99999998........89*************************9999999**********9977777.*******.777 PP

   Trypsin_2  97 eksgsvssGivsgvve.....sesaasgegesflqtdaatspGsSGGplfdsdGrvvGl 150
                 ek  s+ +G +s++++     +e   +  +++++q++a+ s+GsSG+p+++ dG  v+l
  CCD25601.1 173 EKL-SILAGFISRLDRnapdyGELTYNDFNTEYIQAAASASGGSSGSPVVNIDGYAVAL 230
                 776.************988655555555556677********************99986 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00042
   Trypsin_2  31 kkkveeagadgrevpakvvaadpelDlAllkv.ssderaglpplplgpsealkggepvyvvGyplggeksgsvssGivsgvve......sesaasgege 122
                    v+++ a+  +vpa++   +p   +A++k  ++   a++ +++l++++  k+g+++  +Gyp  +     +s+ +v+++++         + + ++ 
  CCD25601.1 574 CLDVFVTIAESVVVPATLEFLHPTQNYAVIKYdPKLVIADIITPKLSNER-MKRGDKAQFIGYPHNNRL--VTSETTVTDISSvsipsnLIPRYRATNL 669
                 344566999999**********999*******999999**********76.66666*******888887..8888888888887667663333333334 PP

   Trypsin_2 123 sfl..qtdaatspGsSG 137
                 + +  +++++t +++SG
  CCD25601.1 670 EAIsiDCNIST-RCNSG 685
                 44423555555.34443 PP

>> PDZ_6  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.1   2.2e-10   3.9e-07       4      56 .]     307     356 ..     304     356 .. 0.93
   2 ?   -2.2   0.0       2.2   3.9e+03      21      52 ..     424     454 ..     421     455 .. 0.76
   3 ?   -0.4   0.0      0.58     1e+03      33      52 ..     720     738 ..     716     740 .. 0.80
   4 !   16.7   0.0   2.8e-06     0.005      15      48 ..     789     820 ..     786     823 .. 0.87
   5 ?   -1.9   0.0       1.7     3e+03       9      36 ..     888     913 ..     885     921 .. 0.79

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.2e-10
       PDZ_6   4 aVdpgsPAdrAG.lrvGDiilsvNGqpveglsladvaallrgsagesvvlvvrr 56 
                 ++  ++P+d  G ++ GD+++++NG+ +   s  +v ++l ++ g+ ++l+++r
  CCD25601.1 307 TILREGPGD--GkIKEGDTLIAINGEYI--SSFIQVDNILDSNIGKNIELTIQR 356
                 566789999..88***************..***********************9 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.2
       PDZ_6  21 iilsvNGqpveglsladvaallr.gsagesvvl 52 
                 ii +++++++   +l+ ++  ++  + +++v++
  CCD25601.1 424 IIDAIDNKET--PDLDTFIGVMKyVPDRKRVTV 454
                 7899******..999999999985555555554 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.58
       PDZ_6  33 lsladvaallrgsagesvvl 52 
                  ++++v+++l+ ++++++v 
  CCD25601.1 720 VDCKQVIDILK-RGEKPIVR 738
                 589********.88888875 PP

  == domain 4  score: 16.7 bits;  conditional E-value: 2.8e-06
       PDZ_6  15 GlrvGDiilsvNGqpveglsladvaallrgsage 48 
                  l+ GD+ilsvN++ v  + ++d+a  + gs+++
  CCD25601.1 789 KLQTGDVILSVNNKLV--TVMDDLAGVICGSNES 820
                 59**************..*******999887776 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 1.7
       PDZ_6   9 sPAdrAGlrvGDiilsvNGqpveglsla 36 
                 sPA + G+ +   i+ vN +++   +l+
  CCD25601.1 888 SPALQYGISATNFITHVNEEET--PDLD 913
                 899999999999999***9998..5544 PP

>> PDZ_2  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.6e-06     0.014      14      78 ..     300     363 ..     281     367 .. 0.79
   2 ?    0.7   0.1      0.37   6.7e+02      37      80 ..     424     467 ..     418     468 .. 0.87
   3 !   16.0   0.2   6.2e-06     0.011      29      81 ..     787     843 ..     772     844 .. 0.84
   4 ?    4.3   0.0     0.029        52      23      55 ..     886     918 ..     876     922 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 7.6e-06
                 .-EEEEE.E-TTSGGGGT.--TT-EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEE CS
       PDZ_2  14 ggvlvvs.VkeggPaakaglkagDvilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktv 78 
                  g+lv++ +  +gP +++ +k gD++++++g  ++s  ++  ++l   +G++++lt++R g +  v
  CCD25601.1 300 IGLLVAEtILREGPGDGK-IKEGDTLIAINGEYISSFIQV-DNILDSNIGKNIELTIQRSGVESVV 363
                 577777778889997777.***************666666.5688999***********9988766 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.37
                 EEEEETTB--SSHHHHHHHHHTS-TT-EEEEEEEETTEEEEEEE CS
       PDZ_2  37 vilkvdgkkvksledlislllkkkpGdtVkltvlRdgkkktvev 80 
                 +i ++d+k+  +l+++i+ +      + V++++ +  ++++ +v
  CCD25601.1 424 IIDAIDNKETPDLDTFIGVMKYVPDRKRVTVRYHHLTDRHSPNV 467
                 7889****************9999999******99888877666 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 6.2e-06
                 GT.--TT-EEEEETTB--SSHHHHHHHHH....TS-TT-EEEEEEEETTEEEEEEEE CS
       PDZ_2  29 kaglkagDvilkvdgkkvksledlislll....kkkpGdtVkltvlRdgkkktvevk 81 
                 k +l++gDvil+v++k v+  +dl + +     +   +  +k++v R+gk  ++++k
  CCD25601.1 787 KVKLQTGDVILSVNNKLVTVMDDLAGVICgsneSSHSNHVLKFKVVREGKIMDLDIK 843
                 678***************999999977763323556788899********9999997 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.029
                 TTSGGGGT.--TT-EEEEETTB--SSHHHHHHH CS
       PDZ_2  23 eggPaakaglkagDvilkvdgkkvksledlisl 55 
                 e++Pa + g+ a   i++v++ +  +l+++ + 
  CCD25601.1 886 ESSPALQYGISATNFITHVNEEETPDLDTFLKV 918
                 789********************9999998765 PP

>> PDZ  PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   3.4e-09   6.1e-06       2      81 ..     271     354 ..     270     355 .. 0.82
   2 !   10.3   0.0   0.00039       0.7      41      62 ..     787     808 ..     769     820 .. 0.80

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3.4e-09
                 EEEETS.TTSESSEEEEEETTSS....SSSSEEEEEECTT.SHHHHHTSSTTEEEEEETTEETTTS.HHHHHHHHHHTTTSEEEEEE CS
         PDZ   2 vsleke.grgglGfslkggsdqr....gdkgifvsevlpg.gaaeadglkvGDkIlsvNgvdvenv.sheeavqaikgskgkvtLti 81 
                 + l+++ ++ +lG++ + +   r    ++ g+ v+e+    g+ + + +k+GD ++++Ng+ ++++ +++ + + + g+  ++ Lti
  CCD25601.1 271 WLLKPYdECRRLGLTSEREATLRelfpEKIGLLVAETILReGPGDGK-IKEGDTLIAINGEYISSFiQVDNILDSNIGK--NIELTI 354
                 5667777999********99999*************99999******.*****************94444444444444..566666 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00039
                 HHTSSTTEEEEEETTEETTTSH CS
         PDZ  41 adglkvGDkIlsvNgvdvenvs 62 
                 + +l+ GD+IlsvN++ v+ + 
  CCD25601.1 787 KVKLQTGDVILSVNNKLVTVMD 808
                 334************9887765 PP

>> Tricorn_PDZ  Tricorn protease PDZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   1.5e-05     0.026      39      80 ..     317     358 ..     313     364 .. 0.92
   2 ?   -3.2   0.0       4.9   8.7e+03      41      54 ..     420     433 ..     419     439 .. 0.84
   3 !    6.0   0.0    0.0062        11      37      69 ..     787     819 ..     777     830 .. 0.86
   4 ?   -0.0   0.0      0.48   8.7e+02      28      55 ..     885     910 ..     875     920 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
                  --.TT-EEEEETTEE-BTTB-HHHHHHTTTTSEEEEEEE-ST CS
  Tricorn_PDZ  39 nvreGdlilavdgepvskekgiaelLvgkagkeveLtvkrkd 80 
                  +++eGd+++a++ge +s+  +++++L ++ gk++eLt++r++
   CCD25601.1 317 KIKEGDTLIAINGEYISSFIQVDNILDSNIGKNIELTIQRSG 358
                  579***********************************9965 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.9
                  .TT-EEEEETTEE- CS
  Tricorn_PDZ  41 reGdlilavdgepv 54 
                  ++G++i a+d +++
   CCD25601.1 420 KVGWIIDAIDNKET 433
                  68********9886 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0062
                  S---.TT-EEEEETTEE-BTTB-HHHHHHTTTT CS
  Tricorn_PDZ  37 GvnvreGdlilavdgepvskekgiaelLvgkag 69 
                   v++++Gd+il+v+ + v+  +++a ++ g ++
   CCD25601.1 787 KVKLQTGDVILSVNNKLVTVMDDLAGVICGSNE 819
                  5899***************99999998888776 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.48
                  S-B-GGGGGS---.TT-EEEEETTEE-B CS
  Tricorn_PDZ  28 earSPLaepGvnvreGdlilavdgepvs 55 
                   ++SP  ++G+   + + i++v+ e++ 
   CCD25601.1 885 GESSPALQYGIS--ATNFITHVNEEETP 910
                  6789*******9..689******99875 PP

>> Trypsin  Trypsin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.5e-07    0.0015      27     211 ..      84     243 ..      69     253 .. 0.72
   2 ?   -0.6   0.0      0.55   9.8e+02      79     122 ..     604     648 ..     582     675 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 8.5e-07
                 EEEEEEETT..EEEEEGGGTTTGGGEEEEESESBTTSCTTTEEEEEEEEEEEETTEBTTTTTTTEEEEEESSSSTSBSSBHCCBBCSTTHTTSTTTEEE CS
     Trypsin  27 CgGslisen..wvlTAaHCvsnasdvkvvlgehnlkksegkeqklkvekvivhpnynpstldnDiallklkepvklgdtvrpiclpaassslpvgttcl 123
                 ++G++++++  ++lT+ H+v       + +g    +  ++ +++ +v  +     y++    +D++ lk + +    + ++ ++l    s +++g+++ 
  CCD25601.1  84 ATGFVVDSElgIILTNRHVVGA----GPFVGY---VVFDN-HEECDVTPI-----YRDPV--HDFGFLKFDPKKIKYSEIQALQLKP--SLAKIGSEIR 165
                 799***999999*********7....445564...23333.345677765.....55555..6**********77888899999988..555******* PP

                 EEESSBSSTSSBSSBEEEEEEEEEEHHHHHHHTTTTSTTTEEEEESTTSSSBCTTTTTTSEEEETTTEEEEEEEEESSSSCTTSEEEE CS
     Trypsin 124 vsGwgrtkekgksdtlqevevpvvsretcksaykgkvtenmlcagakeggkdacqGDSGGPlvcsdgelvGivswgkgcakgnrpgvy 211
                 v+G +  ++ +    l    ++ ++r   +    g++t n + +++ + +++a  G SG+P+v+ dg++v +  +g ++a++   +++
  CCD25601.1 166 VVGNDAGEKLS---ILAGF-ISRLDR---NAPDYGELTYNDFNTEYIQAAASASGGSSGSPVVNIDGYAVALQAGGSSEAST---DFF 243
                 ***99988888...44433.333333...22222335555555555555559******************999999888887...445 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.55
                 TEBTTTTTTTEEEEEESSS.STSBSSBHCCBBCSTTHTTSTTTEE CS
     Trypsin  79 nynpstldnDiallklkep.vklgdtvrpiclpaassslpvgttc 122
                 +y+p+ +  Di   kl+++ +k gd+ + i +p++++ ++ +tt+
  CCD25601.1 604 KYDPKLVIADIITPKLSNErMKRGDKAQFIGYPHNNRLVTSETTV 648
                 355554455555666655446666666666666654444333333 PP

>> DUF31  Putative peptidase (DUF31)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   1.8e-05     0.032     320     369 ..     177     229 ..     166     233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.8e-05
       DUF31 320 itdafianpk...snykekkytnyGlgyllkssalagGaSGSlvrnkdnklvG 369
                 i  +fi++ +     y e +y  +  +y+    + +gG+SGS+v+n d+  v+
  CCD25601.1 177 ILAGFISRLDrnaPDYGELTYNDFNTEYIQAAASASGGSSGSPVVNIDGYAVA 229
                 55566666633346788999****************************99876 PP

>> Peptidase_S7  Peptidase S7, Flavivirus NS3 serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00019      0.34      85     117 ..     203     235 ..     183     243 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00019
                   EEEEEXXXXXTT-TTSEEE-TTSXEEEECEEEE CS
  Peptidase_S7  85 glgitdlnlssGsSGSlvlnqnkqivgiYfatv 117
                   +++  +   s+GsSGS+v+n ++ +v +  ++ 
    CCD25601.1 203 EYIQAAASASGGSSGSPVVNIDGYAVALQAGGS 235
                   56666777899************9999877765 PP

>> Peptidase_S46  Peptidase S46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.82   1.5e+03      45      67 ..      80     103 ..      71     104 .. 0.81
   2 ?    8.7   0.0   0.00033      0.59     629     661 ..     209     241 ..     187     282 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.82
                    ETTTEE-EE-.STT-EEEE-HHHH CS
  Peptidase_S46  45 flggCtasfV.SpeGLvlTNHHCa 67 
                    f +  t+ +V S+ G +lTN H++
     CCD25601.1  80 FVSEATGFVVdSELGIILTNRHVV 103
                    55567888886888********86 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00033
                    ----TT-TT-EEE-TTS-EEEEEEEE-GGGTTT CS
  Peptidase_S46 629 nDitGGNSGSPvlngkgelvGlaFDgnieslsg 661
                    +   GG SGSPv+n +g  v l   g  e+ + 
     CCD25601.1 209 ASASGGSSGSPVVNIDGYAVALQAGGSSEASTD 241
                    5678*****************999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (979 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.68u 0.28s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 6923.62
//
Query:       CCD25602.1  [L=527]
Description: hypothetical protein NDAI_0F02840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-45  154.3   0.3      2e-45  154.3   0.3    3.3  4  Gar1      Gar1/Naf1 RNA binding region
     0.0023   18.6  19.9     0.0023   18.6  19.9    3.0  3  SOBP      Sine oculis-binding protein


Domain annotation for each model (and alignments):
>> Gar1  Gar1/Naf1 RNA binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   2.0      0.56     5e+03     124     151 ..      37      64 ..      26      69 .. 0.65
   2 ?   -5.1   4.5         2   1.8e+04     126     145 ..      82     102 ..      69     116 .. 0.47
   3 !  154.3   0.3   2.2e-49     2e-45       6     153 ..     142     289 ..     138     290 .. 0.96
   4 ?   -2.2   0.6      0.36   3.2e+03     108     139 ..     490     517 ..     469     525 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.56
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Gar1 124 nendeElpeeevefsdDekeaeakkkkk 151
                   +de +p+ee + s+  + +  kk+++
  CCD25602.1  37 SSEDEAPPPEEEKSSEPAEVNGTKKTEE 64 
                 3457777777777776666555555544 PP

  == domain 2  score: -5.1 bits;  conditional E-value: 2
                 XXXXXXXX.XXXXXXXXXXXX CS
        Gar1 126 ndeElpee.evefsdDekeae 145
                 +d E + +  +  sdD+ + e
  CCD25602.1  82 SDSENDINdSNSSSDDDDQDE 102
                 333333332333444433322 PP

  == domain 3  score: 154.3 bits;  conditional E-value: 2.2e-49
                 ----TT----TTS-EEEEEEEEEEETTEEEEEE---S--B--BTT-EEEETT--EEEE--EEES-SSS-EEEEE--GG..HHHHHHHTTTTSEEEEE-X CS
        Gar1   6 pvekedieigppeevleiGtvssivenevviksttsgekkvldfnsilflenktqiGkVdEifGpvnepyysVklnss..eeikaksfkvgdkvyiapd 102
                 p+ ++d++i++++++++iG ++s+++n+++i+++ sgek+vl+ +si++le++t +G+++E+fG++++p+y+V l++s  e+i + + kvg k +i++ 
  CCD25602.1 142 PEIPSDYHITENTSITHIGVIHSVFDNNIIIHANLSGEKRVLKDGSIFCLEDRTLVGTLCEVFGQLQNPFYRVTLPTSenEKIASLKGKVGGKAFIVTP 240
                 556799*********************************************************************9988899999************** PP

                 ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Gar1 103 lplerfllteelkkkkgpdasnendeElpeeevefsdDekeaeakkkkkgk 153
                   ++++++t+el+++kg+dasn +deElpeee+efsdDekea +kkkkk +
  CCD25602.1 241 --DAHWVDTFELRRNKGTDASNGFDEELPEEEQEFSDDEKEALYKKKKKDE 289
                 ..*********************************************9976 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.36
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Gar1 108 fllteelkkkkgpdasnendeElpeeevefsd 139
                  ll    ++++  +++n++++  + +++  s+
  CCD25602.1 490 LLL----QQQQQQQQQNQHQHQHQHQQQGNSN 517
                 443....3333334444433333333333333 PP

>> SOBP  Sine oculis-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   2.2      0.15   1.3e+03      86     146 ..      35      93 ..      17     164 .. 0.46
   2 !   18.6  19.9   2.5e-07    0.0023      60     280 ..     230     452 ..     211     466 .. 0.57
   3 ?   -3.4  12.3       1.3   1.1e+04      96     157 ..     463     520 ..     455     527 .] 0.51

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.15
        SOBP  86 skrsesvspepsksaspsssptssnsskplisvassskllaeksqepaslveaplepkkqr 146
                 s++se++ p p++++s+++  +  n +k+  + +++ + + e  ++ +s+  +++   +++
  CCD25602.1  35 SSSSEDEAPPPEEEKSSEPAEV--NGTKKTEEEKEEGQEILEGDKADSSSDSENDINDSNS 93 
                 4445555555555554444443..3333333333333333322222222222222211111 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 2.5e-07
        SOBP  60 saGseaqLitPdl.wlsncrsrsaspaskrsesvspepsksaspsssptssnsskplisvassskllaeksqepaslveaplepkkqrkkkpglrkpkq 157
                 + G +a ++tPd  w+     r ++ ++ ++   ++ p++++  s+    ++  k++ + ++++k   +++++ +  ++ p++ kk+ +++++  + kq
  CCD25602.1 230 KVGGKAFIVTPDAhWVDTFELRRNKGTDASNGFDEELPEEEQEFSDDEK-EALYKKKKKDEKKRKNQDKNMENEDGCER-PKPNKKRTNQRSNYVSDKQ 326
                 23445999****7366655556666665556666666666666666553.44445555555554555555555555544.4445566666666666666 PP

        SOBP 158 vkagsskssetkagllqkq..qkalplsaeleessvpkpflrpppsiqe.lqsslpnqslpkiapppkppstlappsngaerppfsplleppksasenp 253
                 ++  ++++s +  +++  +   + ++++ + +    +++ ++ ++++q+ +++++++q +++  ppp  +++ + p+n+ +     p ++ p+  ++  
  CCD25602.1 327 KTNYNQPTSLSGMSHVRYKsrTARTNFNDNHTRDYGRPAVVQNNNQFQGyPNQVINQQ-QQTFIPPPGFQYNPHVPPNPYNPMAGHPPISMPHPLMQHQ 424
                 6667777777666666655335666677777777789999999999999666666665.5556777766666666666653222222255577777777 PP

        SOBP 254 pgleepaprgftp.pigpplppvnevpl 280
                 p++++p p + t  p  pplp +n + +
  CCD25602.1 425 PQSQHPYPINPTYyPPRPPLPGQNVQFM 452
                 7666666665322233444444443322 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.3
        SOBP  96 psksaspsssptssnsskplisvassskllaeksqepaslveaplepkkqrkkkpglrkpkq 157
                 p++++ +++ p+ + ++  +++v++ ++ll +++q+++++++++++   ++++++g ++++q
  CCD25602.1 463 PQQQQQQQQHPV-NMQNGNMNPVNQLHQLLLQQQQQQQQQNQHQHQ---HQHQQQGNSNEQQ 520
                 345555666664.556666666666666666555555555444432...3333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3506  (0.195549); expected 358.6 (0.02)
Passed bias filter:                      703  (0.0392102); expected 358.6 (0.02)
Passed Vit filter:                       171  (0.00953762); expected 17.9 (0.001)
Passed Fwd filter:                        74  (0.00412739); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.46
# Mc/sec: 3430.28
//
Query:       CCD25603.1  [L=887]
Description: hypothetical protein NDAI_0F02850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-36  126.4   4.6    1.7e-36  126.4   4.6    2.1  2  GCP_N_terminal  Gamma tubulin complex component N-terminal
    1.4e-28  100.2   3.6    1.4e-28  100.2   3.6    1.9  2  GCP_C_terminal  Gamma tubulin complex component C-terminal


Domain annotation for each model (and alignments):
>> GCP_N_terminal  Gamma tubulin complex component N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   4.6   1.9e-40   1.7e-36       4     299 ..     218     492 ..     215     499 .. 0.87
   2 ?   -0.9   0.0      0.11     1e+03      27      60 ..     644     677 ..     622     693 .. 0.72

  Alignments for each domain:
  == domain 1  score: 126.4 bits;  conditional E-value: 1.9e-40
  GCP_N_terminal   4 llylLqGisgklirfdekddervvkdvrlpgllppslrslverllelgtlyrrlrkfveevsrsesglvlqalaaaldeelteyyrliaqlEsql 98 
                     + y+L+  +++++ +d  +      ++++p+ +p+s+++l++ ++e g ly++l+++v++++ ++++ ++++l  +l++el+ y  +i +l +  
      CCD25603.1 218 ASYTLLATTSHMFPMDY-N------SIQIPSNIPNSISALLHLIFEAGLLYQNLNAMVNNYNMKDVSPIKKSLLLQLNKELQIYTGFINNLITSN 305
                     56777777777886444.4......59***************************************************************97777 PP

  GCP_N_terminal  99 ledsesiltLlrlevwlqetllllrvLanlveevekanlkggallsllheaaqhgdpkvrkllsellervsrpflemlekWileGelsDpynEfF 193
                      +      +L++l+ +l +++ +lr+  + +++ +   + g a+ls+ h+  +hgd  vrk++++l+ +++ ++ ++l +W+   +l+++ynEfF
      CCD25603.1 306 AC-----NSLKSLYMELFDSISTLRIYFKFMNQFD--ITLGDAFLSTFHSWRSHGDLLVRKIATQLFDCTLSIYIDYLGNWLVFERLENNYNEFF 393
                     77.....67**************************..566******************************************************* PP

  GCP_N_terminal 194 veenesvakeklkeddseklweekYtlrkemlPsflseelaekIletGkslnflrescgdsew...iektes..eekeleyiddleelssslsls 283
                     + +n++++          k+  ++Y+l +e++P f+++++a+kI+ +Gk+  fl  +c+d ++   + k++   +++ +e+ ++++   +++ ++
      CCD25603.1 394 IIKNTDTQ----------KTPLDSYKLIHEKIPYFIPKDVAKKIFIIGKTYSFLIDFCKDLQFsnnLSKKYTiiYKNIFEHYNSES--YNTVLNK 476
                     *8888885..........56789*************************************88744444344477666666655444..8889999 PP

  GCP_N_terminal 284 leelidsayklaskrl 299
                     l e+i+++y+++ k  
      CCD25603.1 477 LFESIENQYNEIVKYT 492
                     9999999999887655 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.11
  GCP_N_terminal  27 vkdvrlpgllppslrslverllelgtlyrrlrkf 60 
                      k+++  +l++p ++++ +++++lg l +rl++f
      CCD25603.1 644 LKMFKRLKLTNPLIKDVTKKIAKLGILRSRLQNF 677
                     3333333446888899****************99 PP

>> GCP_C_terminal  Gamma tubulin complex component C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.29   2.6e+03     157     203 ..     366     414 ..     343     490 .. 0.66
   2 !  100.2   3.6   1.6e-32   1.4e-28       7     296 ..     508     879 ..     503     886 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.29
  GCP_C_terminal 157 rqemlhfvsqlqyYvldeviessWrel..eeklkkeatdldelieaHea 203
                        +   ++ l +++++e +e +++e+   ++ ++++t ld+    He+
      CCD25603.1 366 DCTLSIYIDYLGNWLVFERLENNYNEFfiIKNTDTQKTPLDSYKLIHEK 414
                     5555566777777778888888888773334443444446655555554 PP

  == domain 2  score: 100.2 bits;  conditional E-value: 1.6e-32
  GCP_C_terminal   7 llkrylLlgqgdFisrLldalfdelwkpasselrlaLtslLeeairssnaqqsdelkddlsfal.dlpevleeldakldpdsle..gldfltLeY 98 
                      lk+ lL+g++dF+++L + + d l++p  s  +++Lt+ L+ea++ s+ ++       l ++  d+  +++ lda++   +++  g+d++tL+Y
      CCD25603.1 508 TLKNLLLMGRSDFLDLLANKAVDILNPPSVSIQEYKLTNCLQEAVQYSSIAS-------LYLNKeDNNFIINGLDARVLDMGHGsiGWDIFTLDY 595
                     69*****************************99999**********997655.......556667888899999999977788899********* PP

  GCP_C_terminal  99 kvpwplslvit...pealekYqriFrfLlrvkrvefalsslw.krrkatgarsvl.............lkrarllrqemlhfvsqlqyYvldevi 176
                     ++++plsl+i+   ++  ++Y+riF+fL+r k   f  ++ + ++ +  +  ++l             + ++  lr+++++f   l+++++  ++
      CCD25603.1 596 NISPPLSLIINvnrENGKKEYLRIFNFLWRSKKNSFFYNNEMlRTTHILKMFKRLkltnplikdvtkkIAKLGILRSRLQNFNLCLESFCQYYIV 690
                     **********8544568899***************99997653222222222222445566666655566669********************** PP

  GCP_C_terminal 177 essWreleeklkke.................................................at......dldelieaHeafLdsilkkclLrs 216
                     e +++ l++kl+ +                                                 a+      ++++l e H++fL++i +  lL  
      CCD25603.1 691 EKEFQILLQKLNISdegsnpiqinkklktkntrlietssipilkpkksifaddhtststyghdAGfdgdhlNIEQLEEIHNNFLSNIRSHKLLIA 785
                     ***********76668******************99999999999999998888877666665005555668***************99888877 PP

  GCP_C_terminal 217 kk..............kllklleeilelileFakvldgly.lsvselt.........aeeaeeeeleekleerleelekeFrkkvslllkvlral 287
                     ++              +l+ +le++++ i +++++ d  + +               + ++  +e+++  + ++++++k F ++ +++ ++l+a 
      CCD25603.1 786 NSttnigtyskkaypiTLIIILETLFQFINSYSQLNDI-SeKL----LiqfnlldpvDLNNLLTEFSK-SSIEVTRYYKVFLNQSHVFERDLKA- 873
                     74579******988777778888888888888764333.2222....133447655533333333444.5688999********9999999955. PP

  GCP_C_terminal 288 keqeededl 296
                       ++ de+l
      CCD25603.1 874 --DN-DEEL 879
                     ..33.4445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5974.81
//
Query:       CCD25604.1  [L=992]
Description: hypothetical protein NDAI_0F02860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-68  228.9   2.9    1.2e-67  228.1   2.9    1.4  1  N1221     N1221-like protein
    7.6e-66  223.1   8.4    8.6e-40  137.2   3.6    2.7  2  DUF3402   Domain of unknown function (DUF3402)


Domain annotation for each model (and alignments):
>> N1221  N1221-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.1   2.9   1.3e-71   1.2e-67       2     287 ..     233     503 ..     232     505 .. 0.92

  Alignments for each domain:
  == domain 1  score: 228.1 bits;  conditional E-value: 1.3e-71
       N1221   2 aydFeykdsdsleeEldeWFsysdvvlllkakkaFeskweevseeeeeWedv..dederkkfverlleslessdkaRlealeallYialGtwgetksts 98 
                 ++d+e+kd++ l++El++W++ sd+  + ++k +F++ ++ +       e++  d+++++++++ l +  +       +al+++++i++Gt++ t+++s
  CCD25604.1 233 SIDWEFKDFYCLQDELNDWYCNSDFLKFPQSKGQFYQMVKLP-------EKFlkDDSYAREMIDMLFHASN----LTDSALMTIFFISMGTFSLTRDMS 320
                 78**************************************99.......6666799999999999988755....3579******************** PP

       N1221  99 eqleaikenvkllreagglealwealkkafekeredsedekkaeeqqlqeesselallltilYllvevareeseddeelreellel.epnllqflveli 196
                 eqle+i++n+ ll+   +l++l+e +kk++ k+r+++         +l+++ss l+++++++Y++v+v++e ++d++++  ++++  e ++l+fl+ +i
  CCD25604.1 321 EQLEQIRRNNLLLI--PHLDTLLENFKKIAIKCRDSR--------GNLKKHSSLLFYSSSVIYFIVCVCIE-NRDNAKVNITITAFyEARILEFLTFYI 408
                 **************..*******************99........89999*********************.566777777777767************ PP

       N1221 197 aklrwddakslplkkillLlwKllLlvfGgteelkevkkalrelhgls.eeske...kekkplitasPldYhaFrqeitskYPaynppepllple 287
                 +++rw++++s+++++i+lLl+Kll+l+fG+++ ++e+k++l+elhgl+ ++ k     + + ++++sPl+Y aFr +its++P+y++ +++lp++
  CCD25604.1 409 EQWRWNSRLSMRIRNIILLLFKLLVLQFGDKNLYNETKSSLYELHGLEpHKRKYggyAKGSTKLSISPLHYRAFRDDITSRFPDYSMETTKLPID 503
                 ***********************************************7555555554444555****************************9986 PP

>> DUF3402  Domain of unknown function (DUF3402)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.2   3.6   9.6e-44   8.6e-40       1     248 [.     603     831 ..     603     851 .. 0.73
   2 !   87.5   0.2   1.1e-28     1e-24     322     443 ..     852     972 ..     847     989 .. 0.93

  Alignments for each domain:
  == domain 1  score: 137.2 bits;  conditional E-value: 9.6e-44
     DUF3402   1 PasilEAgelfskrvrmtramrqlweerekflkfergweedd.....eeedddleeltleekee...eeeevdegpkkeelseeekkrleavekfYkea 91 
                 P+si EA+ ++s+++++ ++++qlw+er+ f+k+ergw+++d     e      ++++ ++  +   + + +d++       ++  + +++++++Yk+ 
  CCD25604.1 603 PYSIDEAATILSDNLKVKLSTKQLWQERDMFMKTERGWKSNDtdmaiE----PNDSISDDDIAInymNMSVDDYSC----SMKKPIEIMKRIDSYYKDC 693
                 99************************************9887433221....222222222222111222222222....23456778899******** PP

     DUF3402  92 LphLqslvivllklilanvtalvtqqskakeqsinilaaelseeeelseksasgreknkkkgeakelskeeldaartrEitlkAvsgillllLKwfkls 190
                 +++L+ lv vll+++ +n ++++ + ++  ++              +   s++         ++ e++k  l+ +r++Ei lkA sgil++lLKwfkl+
  CCD25604.1 694 FSSLNALVSVLLQTMESNLNNVFYKRTEVADDG------------GMIDLSNK---------DEIEKLKPYLEILRMKEISLKASSGILFVLLKWFKLN 771
                 ********************8877643333332............22111111.........122457889**************************** PP

     DUF3402 191 hvlkfeyltqlLldsnylpLvlklfah..qdvqqvveskndreelsFFqfcnlrskekek 248
                 hvlkfe l+ lL+ds y+++   l+++  ++  + v  k   ++ +F+  c++  ++ ++
  CCD25604.1 772 HVLKFEQLSVLLYDSRYINISMSLLNKysENYAERVCGKIITNNGEFWATCSQYNNQYSE 831
                 **********************99843114455555557778899******997776554 PP

  == domain 2  score: 87.5 bits;  conditional E-value: 1.1e-28
     DUF3402 322 slinlLrilqkicknkahRnllLvqyksseiLkkaLkvpqpeLrlytLKllKnqvpYcGrkWrqsNMrvitaiYlhcrpeLrDdWlagsdvdaeveeal 420
                 sl  +Lril ki+  k++R   L  +   +++kk  + ++ ++  ++L+++K+ +p+  ++W++ +M++i+ ++l+  +eL D+W++g+d+  e+++a 
  CCD25604.1 852 SLAYMLRILRKIIDSKTQRLKELP-LSVGTVFKKYYRLKNLDIYHPILRIIKELTPFKNKRWKSEHMELISGVFLYEELELIDNWVTGKDIAGEINDAC 949
                 56679**************98885.7889********************************************************************** PP

     DUF3402 421 plEqaLrglthwfnlrrYpdkma 443
                  +E+aLr+l++++n r+Y ++m+
  CCD25604.1 950 GQEIALRALMQFYNFRHYGSSME 972
                 *********************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       791  (0.0441185); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 6438.16
//
Query:       CCD25605.1  [L=208]
Description: hypothetical protein NDAI_0F02870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-21   73.9   0.9      1e-20   73.7   0.1    1.5  2  AD        Anticodon-binding domain
     0.0091   16.1   0.5      0.014   15.4   0.5    1.3  1  LSM14     Scd6-like Sm domain


Domain annotation for each model (and alignments):
>> AD  Anticodon-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.84   7.5e+03       8      21 ..      42      55 ..      35      60 .. 0.52
   2 !   73.7   0.1   1.1e-24     1e-20       2      87 ..      92     182 ..      91     184 .. 0.88

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.84
          AD  8 lekrlreaiaeake 21
                +++  +++i+++ke
  CCD25605.1 42 TTSTKKNKIKKSKE 55
                44444455555444 PP

  == domain 2  score: 73.7 bits;  conditional E-value: 1.1e-24
          AD   2 kvdlkrlekrlreaiaeakekeksigkgvskeaqalFdalsktlpdvrW..kgkeIvVldeviIspPYkvenvkkl...skkkkkalervk 87 
                 +++++r+++ l+++ia+a+ ke   ++gv++e+q +F+ ++kt++d++W  k ++I++l +++Is+PYkv+n+k+l   ++++k++l+ + 
  CCD25605.1  92 YINIDRIDQLLKDQIAKASIKEGLLNRGVTEEGQFIFNLIHKTISDTKWgsKSNSIIILGDIEISSPYKVDNIKCLhesDSNSKNSLNLIV 182
                 69***********************************************755667*******************99655555556666665 PP

>> LSM14  Scd6-like Sm domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.5   1.6e-06     0.014       2      74 ..       8      76 ..       7      77 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.6e-06
       LSM14  2 fIGskislisksdirYeGilceinledstiaLqnvrsfGtegrkdneqippskevyeyivFrgsDikdLevle 74
                ++G ++ ++   d + eG +++ n++++ti+L   +s    + k+++    +++++++ + ++  ik Lev++
  CCD25605.1  8 ILGWRVRITNILDTVTEGRIYSFNSSNNTITLDTTTSTKKNKIKKSK----ETNLHDFKIIKCLFIKHLEVID 76
                78999999999999*******************99887666533333....4799999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      456  (0.0254337); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1499.54
//
Query:       CCD25606.1  [L=536]
Description: hypothetical protein NDAI_0F02880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.3e-09   35.4   0.0    2.6e-08   33.8   0.0    1.9  1  DSPc             Dual specificity phosphatase, catalytic doma
    1.2e-05   25.0   0.2    6.4e-05   22.6   0.0    2.1  2  Y_phosphatase    Protein-tyrosine phosphatase
  ------ inclusion threshold ------
       0.12   12.5   0.0       0.37   10.9   0.0    1.8  1  PTPlike_phytase  Inositol hexakisphosphate


Domain annotation for each model (and alignments):
>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   4.3e-12   2.6e-08      36     120 ..     171     280 ..     123     289 .. 0.74

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 4.3e-12
                 TTTTSEEEEECCES.......................STTSCCGGGHHHHHHHHHHHHHTT.-EEEE.EESSSSSHHHHHHHHHHHHHHTSCHHHHHHH CS
        DSPc  36 kkseieklripved.......................ehetkiskyleeavefidkakqkg.kkvlV.HCqaGisRSatliiaYlmktknlslneayef 109
                 k+ +i++++i  +d                       +h+      l+e+++ i++++++g +k++V HC++G  R +t++iaYlmk++  + n   + 
  CCD25606.1 171 KEAKIQNIEIVARDdsiptsqlssipvssflsrngwlDHSPPPFLLLQEIIDDIHNFTTSGkEKIAVlHCKMGKGRCGTICIAYLMKYNPGTGNLQTSS 269
                 5555555555544445555555555555577777777778888888999******9966551688777********************97776666666 PP

                 HHHHSTT-SST CS
        DSPc 110 lkerrpaispn 120
                 l   +  ++ n
  CCD25606.1 270 LDAAKAVFMNN 280
                 66666555555 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.1e-08   6.4e-05      65     193 ..     131     256 ..     126     293 .. 0.75
   2 ?   -0.6   0.1      0.13   7.8e+02     101     147 ..     473     512 ..     440     528 .. 0.59

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 1.1e-08
                    TT--EEEEESBSEETTE.ESS---S-SSTSSEEEETTEEEEEE.EEEEEESSEEEEEEEEEETTTTEEEEEE.EEEEESSS-SSSSGSCCHHHHHH CS
  Y_phosphatase  65 ekvkvivmLtsleekgr.ekcaqYwpeeeeesleygkikvtlkekekedekeyvlrelevkkkkeeseerev.kqlqytnWpdhgvpesaksllkl 158
                    +++ viv+ ++++++++ +  ++Y   ++++  +  ++ ++  ++ k ++ e+v r+ ++  ++ +s    v + l  ++W dh+ p     l ++
     CCD25606.1 131 NSSGVIVSNNNDKDNDNnNDNDNYNY-NDHKNISVATYYLK--KEAKIQNIEIVARDDSIPTSQLSS--IPVsSFLSRNGWLDHSPP-PFLLLQEI 220
                    66789999999988866356666666.44444444444444..456667888999999999888875..5565889999******66.46677788 PP

                    HHHHHHHH.STTSS-EEEECSSSSHHHHHHHHHHHH CS
  Y_phosphatase 159 irkveksk.eaksgpvvVhCsaGvgRtgtfvaldil 193
                    i+++++ + + k++  v hC+ G gR gt++ + ++
     CCD25606.1 221 IDDIHNFTtSGKEKIAVLHCKMGKGRCGTICIAYLM 256
                    888888883335556678************988665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.13
                    EEEEEE.EEEEEESSEEEEEEEEEETTTTEEEEEEEEEEESSS-SSS CS
  Y_phosphatase 101 ikvtlkekekedekeyvlrelevkkkkeeseerevkqlqytnWpdhg 147
                     +v++  k++  +++++l+el  +++  +      + + y +W+d +
     CCD25606.1 473 ETVKCS-KNN-SNTHFMLNELINEQNLGR-----QQFYFYIKWEDLD 512
                    355555.333.444566665544433333.....3678888998765 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.2e-05      0.37     116     154 ..     219     256 ..     210     257 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.2e-05
                      HHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHH CS
  PTPlike_phytase 116 edfdalvsilkeapektalvfnCqmGrgRTTtamviatL 154
                      e +d++ ++  +  +++  v +C+mG+gR  t  +++ +
       CCD25606.1 219 EIIDDIHNFTTSG-KEKIAVLHCKMGKGRCGTICIAYLM 256
                      5566666666655.488999**********999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1063  (0.0592894); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3885.29
//
Query:       CCD25607.1  [L=258]
Description: hypothetical protein NDAI_0F02890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-06   28.7   0.8    0.00012   22.6   0.1    2.7  2  AAA_18           AAA domain
     0.0019   18.0   0.1     0.0048   16.7   0.1    1.7  1  PRK              Phosphoribulokinase / Uridine kinase family
     0.0075   16.4   0.5      0.053   13.6   0.0    2.2  2  tRNA_lig_kinase  tRNA ligase kinase domain
  ------ inclusion threshold ------
      0.012   14.9   2.6      0.024   13.8   2.6    1.6  1  G-alpha          G-protein alpha subunit
      0.067   13.0   0.0       0.13   12.1   0.0    1.4  1  CPT              Chloramphenicol phosphotransferase-like prot
      0.095   12.9   0.3       0.18   12.0   0.3    1.4  1  AAA_28           AAA domain
       0.13   11.9   0.5        0.3   10.8   0.5    1.5  1  AAA_24           AAA domain
       0.14   11.2   0.1       0.24   10.4   0.1    1.3  1  T2SSE            Type II/IV secretion system protein
       0.17   12.1   0.0       0.23   11.6   0.0    1.3  1  AAA_33           AAA domain


Domain annotation for each model (and alignments):
>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   6.1e-08   0.00012       1     114 [.      18     173 ..      18     178 .. 0.72
   2 ?   -0.7   0.1         1     2e+03      27      82 ..     200     228 ..     176     242 .. 0.47

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.1e-08
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gfgvnlrdvakenglllevdpe.....................................aldeskrldedkldkll 61 
                 ++++G++ +GKtt+ak  s+   +   +++d +++++++++ dp                                      +                
  CCD25607.1  18 VAISGCSSSGKTTIAKLTSQIFpEATLIHQDDFYKHDSEIPIDPIrkiqnwdcpealdfslfakeldsikrtgvvsnklihnD---------------- 100
                 689***************99865559999999999999999999977777777776655444443333333333333333330................ PP

      AAA_18  62 daleenss..........................aleegknlvidghlaeleseaakdikk.vvLtaspeelleRlekRg 114
                        +                          +++e k +++dg++  + se + + +    ++a++ +l++R ++R+
  CCD25607.1 101 -------NvddltkfnsilkgqaltelkqkyakiNEAEYKIIIVDGFMILNNSEIRSKFNLnLLIRAPYCILKKRRNNRD 173
                 .......25556666666666666666666779999**********9988887744433336*************99997 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1
      AAA_18  27 nlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidgh 82 
                 n+++++ +n+ ++   ++  ++ k                           ++d  
  CCD25607.1 200 NHSFLFENNDVEDKLLHNGNKNDK---------------------------ILDFM 228
                 222222222222222222222222...........................33333 PP

>> PRK  Phosphoribulokinase / Uridine kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.4e-06    0.0048       2     136 ..      18     158 ..      17     176 .. 0.67

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.4e-06
         PRK   2 IgvagsSGaGkttvarklekifgrekvkaaeiegdsflrldraekdleleerkrakekevsflspeandfdllyevlkelkegkkvdkpiYsheteeaa 100
                 ++++g S +Gktt+a+   +if ++         + +++ d  ++d e+     +k    +++ pea df l  + l + k ++ v+ +   h+++  +
  CCD25607.1  18 VAISGCSSSGKTTIAKLTSQIFPEA---------TLIHQDDFYKHDSEIPIDPIRK--IQNWDCPEALDFSLFAKELDSIKRTGVVSNKL-IHNDNVDD 104
                 79********************922.........2233333333333333333333..346789******************99987765.45555555 PP

         PRK 101 p..................dkeeliegadvlviEGlhalydervaelldlkiyv 136
                                      +   ++ ++++++G   l   ++++  +l+  +
  CCD25607.1 105 LtkfnsilkgqaltelkqkYAKINEAEYKIIIVDGFMILNNSEIRSKFNLNLLI 158
                 456788888888887774322333344578888888777777777777776655 PP

>> tRNA_lig_kinase  tRNA ligase kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.7e-05     0.053       3      38 ..      16      54 ..      15      67 .. 0.84
   2 ?    0.2   0.2      0.35   7.1e+02      28      61 ..      96     138 ..      91     159 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.7e-05
                     EEE--TTS...SHHHHHHHHHHH-TTSEEEEGGGS-TT- CS
  tRNA_lig_kinase  3 vpiatiGC...GkttvaltlenlfgeWghvqnDnitgkd 38
                     + +a+ GC   Gktt+a+  +++f+e + + +D+  ++d
       CCD25607.1 16 ILVAISGCsssGKTTIAKLTSQIFPEATLIHQDDFYKHD 54
                     567778888889*********************987754 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.35
                      EEEGGGS-TT..-SS-HHHHHHHTT.......SSTT--EEEEE CS
  tRNA_lig_kinase  28 hvqnDnitgk..dkkklvkealell.......kkdeskvvlvD 61 
                       + nDn+ +    ++ l  +al++l       ++ e k+++vD
       CCD25607.1  96 LIHNDNVDDLtkFNSILKGQALTELkqkyakiNEAEYKIIIVD 138
                      5778888544214444555677777333333244455555555 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   2.6   1.2e-05     0.024      13      58 ..       5      57 ..       2     239 .. 0.50

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
                XXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS--.......--HHHHHC CS
     G-alpha 13 aerkarkkkrevkllllGqseSGKsTilkqlkllykkg.......fseeelat 58
                +++++ +k++++ + + G+s+SGK+Ti k    ++ ++       f + ++++
  CCD25607.1  5 SQNTTHNKRKIILVAISGCSSSGKTTIAKLTSQIFPEAtlihqddFYKHDSEI 57
                566777778899***************99777555443343222243333333 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   6.5e-05      0.13       3      36 ..      17      50 ..      14      64 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 6.5e-05
                EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHH CS
         CPT  3 iilLnGgsssGKsslaralqevldepwlhlgvDa 36
                ++ + G sssGK+++a+   ++++e+ l  + D 
  CCD25607.1 17 LVAISGCSSSGKTTIAKLTSQIFPEATLIHQDDF 50
                45679*****************999877555554 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.3   9.1e-05      0.18       2      17 ..      18      33 ..      17      45 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 9.1e-05
      AAA_28  2 ivitGgestGKTtlle 17
                ++i+G++s+GKTt+++
  CCD25607.1 18 VAISGCSSSGKTTIAK 33
                89***********986 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   0.00015       0.3       5      72 ..      18     138 ..      14     141 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      AAA_24   5 iliyGpsgiGKTtlakel....gpkplfi..dtekGlksldadkfpdie...........swedfldevvel........................... 59 
                 ++i G s +GKTt+ak      ++ +l+   d    +k+   + ++ i+            +  f +e++++                           
  CCD25607.1  18 VAISGCSSSGKTTIAKLTsqifPEATLIHqdD---FYKHDSEIPIDPIRkiqnwdcpealDFSLFAKELDSIkrtgvvsnklihndnvddltkfnsilk 113
                 6899************9999954445444552...3444444444444444455555555777777777777888888888888888888888888889 PP

      AAA_24  60 ............aaeladyktlviD 72 
                             + ++a+yk++++D
  CCD25607.1 114 gqaltelkqkyaKINEAEYKIIIVD 138
                 9999999999888888999999998 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00012      0.24     128     156 ..      12      42 ..       6      49 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
       T2SSE 128 erglilv..sGgTgsGKttllyallkeinks 156
                 +r++ilv  sG  +sGKtt++    +++++ 
  CCD25607.1  12 KRKIILVaiSGCSSSGKTTIAKLTSQIFPEA 42 
                 5677775349***********9999998876 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.23       1      33 [.      17      86 ..      17     162 .. 0.66

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
      AAA_33  1 lvllvGlpGsGKstlaerllkklg.avllssdt....................................l 33
                lv + G + sGK+t a+   +  + a+l+ +d+                                    +
  CCD25607.1 17 LVAISGCSSSGKTTIAKLTSQIFPeATLIHQDDfykhdseipidpirkiqnwdcpealdfslfakeldsI 86
                68889************99988889********6666666666666666666666654444444444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 1828.31
//
Query:       CCD25608.1  [L=72]
Description: hypothetical protein NDAI_0F02900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-13   49.3   0.1    4.1e-13   49.0   0.1    1.1  1  SecE      SecE/Sec61-gamma subunits of protein translocation 


Domain annotation for each model (and alignments):
>> SecE  SecE/Sec61-gamma subunits of protein translocation complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.1   2.3e-17   4.1e-13       2      54 ..      19      70 ..      18      71 .. 0.95

  Alignments for each domain:
  == domain 1  score: 49.0 bits;  conditional E-value: 2.3e-17
                HCHHHHHHHHHCCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        SecE  2 kFfkevkaElkKVtWPtrkEllkttvvVlvfvvimglflflvDlvfsklinll 54
                +F+k+  ++l K+ +P++kE+ k+  +V ++++ +g+++++++l++ ++i+++
  CCD25608.1 19 EFVKDGNQFLTKCKKPDWKEYSKIVRAVGIGFLAVGVIGYAIKLIH-IPIRYV 70
                8********************************************9.999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 533.15
//
Query:       CCD25609.1  [L=715]
Description: hypothetical protein NDAI_0F02910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.4e-28   97.7  55.1    4.3e-23   81.8  39.4    1.7  2  MFS_1       Major Facilitator Superfamily
  ------ inclusion threshold ------
      0.043   12.7  19.2      0.021   13.7   0.7    2.3  2  MFS_1_like  MFS_1 like family
       0.94    9.6   3.8        2.4    8.3   3.8    1.7  1  DDHD        DDHD domain
        7.3    6.2  17.1       0.24   11.0   0.1    3.0  3  FAM176      FAM176 family


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8  39.4   9.5e-27   4.3e-23       5     340 ..     221     553 ..     214     565 .. 0.76
   2 !   30.5   7.7   3.9e-11   1.7e-07      41     176 ..     470     608 ..     462     625 .. 0.74

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 9.5e-27
       MFS_1   5 aflsalarsilgpalpl.al..aedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrvlqGlga 99 
                 +fl++++ + ++ ++ + +l  ++  g+s+  + l+++l  +    + +++++++  +G ++++++g l++++g+ll++fa+ lw l +   vl G+g 
  CCD25609.1 221 IFLNSWGCNSAFGIFLSfYLsnGTYAGASKYDYALVTGLSVFIGQGFCPFVMVIAKVIGNKPTMIIGNLCMLAGFLLASFATKLWqLYCTQGVLIGFGI 319
                 344444444444444333333344456888888889988666666677888888999*****************6666699****************** PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllgglla.sslgWravfyilaivsllafvlfllllpeepperkrkspkeeekgtgpaplv 197
                 +++f+ + +++  wf k +rg   g+  +g+++G ++  l++  ++ + +  +++  +lai ++ +  ++++l+ e +p ++   +      +  ++++
  CCD25609.1 320 SLMFTPATTVLPGWFLK-KRGVSQGISLMGTGMGGVIYSLASNKMIhDRGDTHWCLRMLAITCVTSSFIAIALIKEHNPIKPLGLKSWA-PIKNTFSMI 416
                 *****************.*************************99989999***************77755666555555444444444.233333333 PP

       MFS_1 198 pawkallkdpvlw..illialllfffgfsglltllplylqevlgls...glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalgl 291
                   +k++ ++p++   +++++++lf  g++++ ++l  y     gl+   g  +++++l  ++++g   +++ g l dr+gr   ++   l +ll++ ++
  CCD25609.1 417 LSIKIVTRKPFVPliAIWFTFALF--GYNLMIFTLAAY-AVAKGLTqhdG-TTLTAVLNGCQCIG---RPVMGLLGDRFGR--CNVTVTLTFLLCVYMF 506
                 378999999988534455555555..9999********.*******8886.45554688888888...************8..6666666666666666 PP

       MFS_1 292 allavtssavllllvlvliGfglgfvfpsllalasdlappeeagtasgl 340
                 a++ ++++ + ll++++++G ++g+++++ ++l++d++    + +++g+
  CCD25609.1 507 AFWIPAHTFLQLLFFSIMVGSCVGVANVMNTVLIADMC--GPTDFLAGW 553
                 666666577777778888*******************9..455555555 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 3.9e-11
       MFS_1  41 yalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailg 137
                     ++++ +++G l+drfGr  v ++  +l+++  ++++++  +++  ll++ ++ G + g+++ +  +liad+  +++   + g+++ + +   ++ 
  CCD25609.1 470 LNGCQCIGRPVMGLLGDRFGRCNVTVTLTFLLCVY-MFAFWIpaHTFLQLLFFSIMVGSCVGVANVMNTVLIADMCGPTDFLAGWGFVNYSGAPVLLVV 567
                 444689*****************999998888888.444443337766******************************999999999998877777777 PP

       MFS_1 138 pllggllasslgWravfyilaivsllafv..lfllllpeep 176
                  +++ +l++  +   +++   i+s  +f   l+l+l+++e+
  CCD25609.1 568 EVIAQALVDTKNINNPYLHTQIFSGCCFTtaLILILFLREY 608
                 78888888777755555544444444433333334444444 PP

>> MFS_1_like  MFS_1 like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  12.0    0.0062        28     229     371 ..     214     361 ..     210     376 .. 0.82
   2 ?   13.7   0.7   4.7e-06     0.021      24      86 ..     451     511 ..     431     627 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0062
  MFS_1_like 229 ifllvalilgmswgiienF...lflYL...kelgasntllGslvalgvvaeiplfffaeklleklGhvklliiallayilrfllyaiienawlvlpie. 320
                 ++++v++i  +swg   +F   l+ YL      gas++    ++ l v+    +  f   + + +G    +ii+ l + + fll ++ +++w +  ++ 
  CCD25609.1 214 VVVAVTVIFLNSWGCNSAFgifLSFYLsngTYAGASKYDYALVTGLSVFIGQGFCPFVMVIAKVIGNKPTMIIGNLCMLAGFLLASFATKLWQLYCTQg 312
                 6778999999999987776666999**5333589**********************************************************9988876 PP

  MFS_1_like 321 vLhgisfgllwaaaveyvskiapksleatgqgllsglyfglGralGsliGG 371
                 vL g+ + l++  a+++    + k+ ++  qg+   +  g+G+ + sl++ 
  CCD25609.1 313 VLIGFGISLMFTPATTVLPGWFLKK-RGVSQGIS-LMGTGMGGVIYSLASN 361
                 9**********99999998877654.56677763.4456777777666665 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 4.7e-06
  MFS_1_like  24 iylkskglkaseigiitlilpltsilsppiwgvlaDrfgkrkkvvilslllsavlflsllfip 86 
                  y   kgl+ ++   +t++l  ++ +++p++g l Drfg+ +  v l+ ll + +f+  + ip
  CCD25609.1 451 AYAVAKGLTQHDGTTLTAVLNGCQCIGRPVMGLLGDRFGRCNVTVTLTFLLCVYMFA--FWIP 511
                 5667899999999*****************************999999999999998..7777 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.8   0.00054       2.4     119     189 ..     117     255 ..       5     263 .. 0.43

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00054
        DDHD 119 s.......................lelaeeesasl.aessksherasesskasqeskaaesstasssaksskaee....kvelek.............. 175
                                          ++ +++++s+ + ++  ++r+se ++++qe+++++++ +++++++ ++ +    +    k              
  CCD25609.1 117 DavhsfqstatslkdlesrihtprPHHDDNNTSSKaNIAEMIQRRKSEGQEQEQEQEQEQEQGTEEESEEGETIKrvftN----Kesgnvdlppdggyg 211
                 01111122222222222222222211122222111122222222333333333333333333322222222222223330....145555566666666 PP

        DDHD 176 ..............................vralnwwgRiDYaL 189
                                               ++   +  ++DYaL
  CCD25609.1 212 wvvvvavtviflnswgcnsafgiflsfylsNGTYAGASKYDYAL 255
                 66666666555555666666666666554445555555777776 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   6.1     0.024   1.1e+02      69     106 ..     160     196 ..     128     202 .. 0.38
   2 ?   -3.9   0.4       2.2   9.9e+03      24      44 ..     519     541 ..     505     546 .. 0.65
   3 ?   11.0   0.1   5.4e-05      0.24      28     116 ..     591     686 ..     584     693 .. 0.58

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.024
      FAM176  69 sededeeeeeeeedsseseaeeelsefertlsvnvfts 106
                   +++ +e+e+e+++++++ +ee se e++    vft+
  CCD25609.1 160 RRKSEGQEQEQEQEQEQEQGTEEESE-EGETIKRVFTN 196
                 11111111111111111111122222.22223444444 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 2.2
      FAM176  24 LlF..vlgvcvGLlltLcllvir 44 
                 L+F  ++g cvG    +  ++i+
  CCD25609.1 519 LFFsiMVGSCVGVANVMNTVLIA 541
                 44444678899988777766665 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 5.4e-05
      FAM176  28 lgvcvGLlltLcllviriscrkdle.rlkkkkkklkeeseka...sededeeeeeeeedss...eseaeeelsefertlsvnvftsaeelerAqRl 116
                 +g c+   l L+l + + + r +l+ r+ +++ klk++ ++    s+++d++eee  e ++    ++++e++++   t++ n++ + ++ + A  l
  CCD25609.1 591 SGCCFTTALILILFLREYAVRLKLReRQIANDAKLKDHFSSGtglSSEKDDDEEEGGEGNTgvgYDQISERMNDKVETIKHNAYDEDDDNDAASQL 686
                 68888877777777777776666663222222233332222235544444444443333320114556667788888999******9999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1839  (0.102571); expected 358.6 (0.02)
Passed bias filter:                      775  (0.0432261); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 4629.05
//
Query:       CCD25610.1  [L=404]
Description: hypothetical protein NDAI_0F02920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.7e-16   59.3   0.1    4.7e-16   59.3   0.1    3.2  3  CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase


Domain annotation for each model (and alignments):
>> CDP-OH_P_transf  CDP-alcohol phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.1   2.6e-20   4.7e-16       1      66 []      46     121 ..      46     121 .. 0.95
   2 ?   -2.3   0.7      0.45   8.1e+03      11      11 ..     180     180 ..     127     234 .. 0.56
   3 ?   -4.2   7.8         1   1.8e+04      26      44 ..     331     390 ..     274     393 .. 0.54

  Alignments for each domain:
  == domain 1  score: 59.3 bits;  conditional E-value: 2.6e-20
                      S-HHHHHHHHHHHHHHHHHGGGS-H.............HHHHHHHHHHHHHTTHHHHHHHHTT---H.HHHHHHHHHH CS
  CDP-OH_P_transf   1 nlPnaiTllrlllsvlailllltyyp...........lvlailllliasltDalDGklARrlnqvst.lGkllDslaD 66 
                      ++Pn++Tll+l ++++++l  l+y+p           + +ai l+l++++ Da+DG +ARr++q s  lG+l+D+ +D
       CCD25610.1  46 MAPNVVTLLGLSFIIINVLATLYYDPslteqtpswtyFSYAIGLFLYQTF-DACDGLHARRTGQ-SGpLGELFDHCID 121
                      69****************99989999**********************99.*************.655*******998 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.45
                      H CS
  CDP-OH_P_transf  11 l 11 
                      +
       CCD25610.1 180 I 180
                      1 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 1
                      .......................................HHHHHHH..........HHHHHHTTHH CS
  CDP-OH_P_transf  26 p.....................................lvlailll..........liasltDalD 44 
                                                            l                 +i+ +tD lD
       CCD25610.1 331 NfpmlvpsiqlvyylisthylkrdttstiinlvwfglgL------TlgihamfineIIYEFTDYLD 390
                      044444444444444455566777766555543333332......144444444455999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2876.73
//
Query:       CCD25611.1  [L=150]
Description: hypothetical protein NDAI_0F02930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-50  168.6   2.3    6.8e-50  168.5   2.3    1.0  1  Tom22     Mitochondrial import receptor subunit Tom22
  ------ inclusion threshold ------
      0.057   13.6   0.2        2.8    8.1   0.1    2.0  2  BSMAP     Brain specific membrane anchored protein
       0.38   10.1   3.6       0.52    9.6   3.6    1.2  1  DUF4820   Domain of unknown function (DUF4820)


Domain annotation for each model (and alignments):
>> Tom22  Mitochondrial import receptor subunit Tom22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.5   2.3   1.1e-53   6.8e-50       1     137 [.       1     140 [.       1     141 [. 0.86

  Alignments for each domain:
  == domain 1  score: 168.5 bits;  conditional E-value: 1.1e-53
       Tom22   1 mVkltevedeefqeeqegeeeelaeededead....etdsdseissdedddfdvedEtlldRivALkDiippttRksissavstttslvkstlsfsGkl 95 
                 mV+lte+++e+ + +q++++ +++++++ +++    e++++++++sd +ddf+ e+Et+++R++ALkDi+pp++R +i++a++ tts++k+++s++G++
  CCD25611.1   1 MVELTEIKEENDVPTQTTQNGSIIDDAKPTEEqlkqENEEEEDDDSDFEDDFN-ENETFMERLYALKDIVPPKQRINICNAFNLTTSFIKTAFSKTGNI 98 
                 9***********99998888444443333222343344444444478999**9.9******************************************** PP

       Tom22  96 lWvvttSaLLlGvPlaLaieeEqqlvemEkemklqksanell 137
                 +W++ttSaLLlGvPl+L+i++Eqql+emEk+++lqk+ane+l
  CCD25611.1  99 TWILTTSALLLGVPLSLSILAEQQLIEMEKTFDLQKDANEIL 140
                 ****************************************98 PP

>> BSMAP  Brain specific membrane anchored protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00047       2.8     127     182 ..      27     109 ..       3     115 .. 0.59
   2 ?    3.9   0.0    0.0091        54      87     109 ..     120     142 ..     112     148 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00047
       BSMAP 127 lgpkdkkakvkkkkeeekeklks.skaeeeqpee...................................dflgclskrsgLprwiLaat.Lll 182
                 ++p++++ k+++++ee++   +  +        +                                   +f++    ++g   wiL++  Lll
  CCD25611.1  27 AKPTEEQLKQENEEEEDD--DSDfE--------DdfnenetfmerlyalkdivppkqrinicnafnlttSFIKTAFSKTGNITWILTTSaLLL 109
                 123333333332222222..22112........1222233456699999999999999**********99**99999*********9751554 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.0091
       BSMAP  87 aqsfisstwtfylqaDdgkvvvf 109
                  q++i+  +tf lq+D ++++v 
  CCD25611.1 120 EQQLIEMEKTFDLQKDANEILVG 142
                 5789999***********99985 PP

>> DUF4820  Domain of unknown function (DUF4820)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.6   8.8e-05      0.52     160     214 ..       8      63 ..       2      68 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 8.8e-05
     DUF4820 160 eldnsartlterksekesaesseskkrnkeerdaeseeessede.eeeetvkelle 214
                 + +n+++t t+++ +   ++++++++ ++e++++e++++  ed+ +e+et  e+l 
  CCD25611.1   8 KEENDVPTQTTQNGSIIDDAKPTEEQLKQENEEEEDDDSDFEDDfNENETFMERLY 63 
                 67899999999999999999998888888888887777777777899***999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1257  (0.0701099); expected 358.6 (0.02)
Passed bias filter:                      657  (0.0366445); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1146.39
//
Query:       CCD25612.1  [L=1068]
Description: hypothetical protein NDAI_0F02940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-99  331.5   0.0    2.2e-99  331.5   0.0    2.9  3  GNAT_acetyltr_2  GNAT acetyltransferase 2
    1.3e-91  306.5  11.3    3.7e-91  305.0  11.3    1.8  1  tRNA_bind_2      Possible tRNA binding domain
    1.2e-65  220.7   0.0    7.4e-65  218.1   0.0    2.4  2  Helicase_RecD    Helicase
    8.7e-33  112.1   0.4    2.6e-32  110.6   0.0    2.1  2  DUF1726          Domain of unknown function (DUF1726)
     0.0051   17.1   0.0       0.35   11.2   0.0    2.9  2  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.027   14.2   0.2        1.5    8.6   0.0    2.8  2  Sigma70_r4_2     Sigma-70, region 4
      0.027   14.8   0.5       0.72   10.2   0.0    3.2  3  AAA_19           AAA domain
      0.046   13.5   0.0       0.12   12.2   0.0    1.7  1  DEAD             DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> GNAT_acetyltr_2  GNAT acetyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2      0.85   1.9e+03     115     157 ..     422     464 ..     411     477 .. 0.66
   2 !  331.5   0.0  9.6e-103   2.2e-99       1     226 [.     540     770 ..     540     771 .. 0.96
   3 ?   -3.5   3.9       2.5   5.6e+03     115     149 ..     978    1012 ..     945    1060 .. 0.53

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.85
  GNAT_acetyltr_2 115 ralellekyyegklssleeeeekeeeeeeekeeeeeklsleee 157
                        l+l+++ +++++s+ +e++++e  ++++++++++++s  + 
       CCD25612.1 422 LSLKLIQQLRTQSISTGREQSQTEIISRDNAKQNNTSSSSLSG 464
                      4688888888889988888888877666666655554443333 PP

  == domain 2  score: 331.5 bits;  conditional E-value: 9.6e-103
  GNAT_acetyltr_2   1 klvallvssHYknsPnDLqllsDaPahklfvLlapkkek..kklpevlcvvqvalEGkiskesvknslsrgkrasGdlipwtlsqqfqdeefas 92 
                      k++al+v+sHYknsPnDLql+sDaPah+lfvLl p + k   ++p++lcv+q+alEG+isk+sv+nslsrg+ra Gdlipw++sqqfqdeefa 
       CCD25612.1 540 KMMALYVASHYKNSPNDLQLMSDAPAHQLFVLLPPIDPKdgGRIPDPLCVIQIALEGEISKQSVRNSLSRGQRAGGDLIPWLISQQFQDEEFAG 633
                      79*******************************9999887899*************************************************** PP

  GNAT_acetyltr_2  93 lsGaRivRiAvhpelqkmGYGsralellekyyegklssleeeeekeeeeeeekeeeee...klsleeeklkprkelpplllklseekpekldyl 183
                      lsGaR+vRiA++pe+++mGYGsra++ll++y+egk+++++ee++ ++ + ++++++e    +l +++ kl+++k+lpplllklse++p+ l+yl
       CCD25612.1 634 LSGARVVRIATNPEYSSMGYGSRAIQLLRDYFEGKFTDMSEETHPKDYSIKRVSDKELektNLLKDDIKLRDAKTLPPLLLKLSEQPPHYLHYL 727
                      *******************************************9999999998887766567778889999*********************** PP

  GNAT_acetyltr_2 184 gvsfGltseLlkFWkragfspvylrqtaneltGEhsaimlrsl 226
                      gvs+Glt++L+kFWk+++f+pvylrqtan+ltGEh+++ml+ l
       CCD25612.1 728 GVSYGLTQSLHKFWKNNKFVPVYLRQTANDLTGEHTCVMLNVL 770
                      ****************************************976 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2.5
  GNAT_acetyltr_2  115 ralellekyyegklssleeeeekeeeeeeekeeee 149 
                       +a++ +++  ++ ++sl+ e+ + +e++ee e+++
       CCD25612.1  978 EAVKAMKEKQKELINSLNLEKYAINENSEEWEQSK 1012
                       44444433333333333333332222222222221 PP

>> tRNA_bind_2  Possible tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.0  11.3   1.6e-94   3.7e-91       1     234 [.     777    1011 ..     777    1012 .. 0.96

  Alignments for each domain:
  == domain 1  score: 305.0 bits;  conditional E-value: 1.6e-94
                   HHHHHHHHHHHHHHHHHHHHSS------S-----------------..---------------HHHHHHHHHHHHS---HHHHHSSSSHHHHHHHH CS
  tRNA_bind_2    1 WLgafakdFrkRflsLLsyqFrkfeavlaLsilesknkgeklekse..ekkeltkeeldellspfDlkRLesYannllDYhvilDllptlaklyFs 94  
                   WL +fa+dF+kRflsLLsy+F+kf++v++Ls+les++k+++l++++  + kel+k++ld+++spfDlkRL+sYannllDYhvi+D+lp+l+ lyF 
   CCD25612.1  777 WLVEFANDFHKRFLSLLSYDFHKFTSVQSLSVLESSKKAQELRDDQtsHIKELNKTQLDDIFSPFDLKRLDSYANNLLDYHVIVDMLPMLSLLYFG 872 
                   *************************************999765444227799******************************************** PP

                   --SSTTTS-SSSSSSHHHHHHTT---HHHHHHHHT--SSHHHHHHHHHHHHHHHHH-HHHHHHHHH-XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  tRNA_bind_2   95 grlkeevkLsavqsaiLlaiGLQrksvddlekeLnlpsnQvlalFvkiirkvskalreilekaieeelpkekeeekaaeaeeeeakekelkplees 190 
                   g+++++v+Ls+vqsaiLlaiGLQrks+d+++keLnlp+nQ++a+F+ki+rk+s ++r++l+++i+++lp  ++  + ae++ ee+k+ +++++ ++
   CCD25612.1  873 GKMGNSVSLSSVQSAILLAIGLQRKSIDNISKELNLPANQTIAMFAKIMRKFSVYFRQVLSESIDQSLPVLQND-EIAEMNGEEIKQYNAADALDQ 967 
                   ***********************************************************************996.789****************** PP

                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  tRNA_bind_2  191 leeeLeeaakeveeklkekqrelidsldlekYaikgdeeeweka 234 
                   +ee+Leea++e+ +++kekq+eli+sl+lekYai++++eewe++
   CCD25612.1  968 MEEDLEEAGSEAVKAMKEKQKELINSLNLEKYAINENSEEWEQS 1011
                   *****************************************986 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   2.4e+03      60      86 ..      87     113 ..      44     143 .. 0.62
   2 !  218.1   0.0   3.3e-68   7.4e-65       2     177 .]     281     497 ..     280     497 .. 0.95

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
  Helicase_RecD  60 kkkkaekaelrvrkqrieyiapdellk 86 
                    + ++++  e+ +++q+i+y+  +e+ k
     CCD25612.1  87 EVNDQDPFETFISNQNIRYVYYKETEK 113
                    222223333444466666666655554 PP

  == domain 2  score: 218.1 bits;  conditional E-value: 3.3e-68
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflakglealglke..........eekkkkaekaelrvr...kqrieyiapdel 84 
                    ltA+RGRGKSaalG+ +aa++++g+sni+vt+ps+en+ktlfef++kg++alg++e          +++++ka+ +++ ++   +q+i+yi p++ 
     CCD25612.1 281 LTAGRGRGKSAALGVSIAAAVSHGYSNIFVTSPSPENLKTLFEFIFKGFDALGYQEhidydiiqstNPDFNKAI-VRVDIKrghRQTIQYIIPQDS 375
                    8*******************************************************999999988777777777.444444788************ PP

  Helicase_RecD  85 lklkeqadllvvDEAAaiplpllkkllekfkrvvlatTvhGYEGtGrgfslkflkqlkke...............................kkrel 149
                    + l  qa+l+v+DEAAaiplp++k+ll +++ v++a+T++GYEGtGr++slk+++ql+++                               ++r+l
     CCD25612.1 376 HVLG-QAELVVIDEAAAIPLPIVKNLL-GPYLVFMASTINGYEGTGRSLSLKLIQQLRTQsistgreqsqteiisrdnakqnntsssslsgSHRQL 469
                    **98.8*********************.***************************************************************888** PP

  Helicase_RecD 150 releleepiRyaegdplEkwlndlLlLd 177
                    +e++l+epiRya+gdp+Ekwln+lL+Ld
     CCD25612.1 470 KEISLDEPIRYAPGDPIEKWLNKLLCLD 497
                    ***************************7 PP

>> DUF1726  Domain of unknown function (DUF1726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   1.2e-35   2.6e-32       1      93 []     108     202 ..     108     202 .. 0.99
   2 ?   -4.4   0.0         8   1.8e+04      71      83 ..     781     793 ..     778     795 .. 0.71

  Alignments for each domain:
  == domain 1  score: 110.6 bits;  conditional E-value: 1.2e-35
     DUF1726   1 ykesekvLGqtydllvldlfealtPnalgrlvetVrGGGliilllppleelkqlyt...dfhkklvveplteevkkrfnkrfirklkehegilivd 93 
                 yke+ek+LG+ty++++l++fealtPn+l+r+ etV+GGG i++ll+++++lkqlyt   d+h+++++e++  +v +rfn+rfi +l + +++l+vd
  CCD25612.1 108 YKETEKILGNTYGMCILQDFEALTPNLLARTLETVEGGGTIVILLKSMTSLKQLYTmtmDVHSRYRTEAHG-DVVARFNERFILSLGSNPNCLVVD 202
                 9*********************************************************************7.**********************98 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 8
     DUF1726  71 vkkrfnkrfirkl 83 
                 + + f krf++ l
  CCD25612.1 781 FANDFHKRFLSLL 793
                 5567888888766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00015      0.35       9     111 ..     280     399 ..     275     404 .. 0.84
   2 ?    2.3   0.0     0.082   1.8e+02      10      40 ..     412     444 ..     408     477 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00015
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka........................erlsseelleale 83 
                 ++t+  G GK+  l      ++ +      + + +fvt ps++++k+l++ +++ ++  +                          +r+ ++ +   + 
  CCD25612.1 280 ALTAGRGRGKSAALGVSIAAAVSH------GYSNIFVTSPSPENLKTLFEFIFKGFDALGYQehidydiiqstnpdfnkaivrvdiKRGHRQTIQYIIP 372
                 567777888888887777777765......999************************98888************9999999988888888888888888 PP

      AAA_22  84 qalraravielliiDEaqhlrseealee 111
                 q ++  +  el++iDEa  + +  ++++
  CCD25612.1 373 QDSHVLGQAELVVIDEAAAI-PLPIVKN 399
                 888888889********998.7655555 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.082
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee..erp 40 
                 + G  GtG++++l+ +++  ++ ++  +   + 
  CCD25612.1 412 INGYEGTGRSLSLKLIQQLRTQSISTGReqSQT 444
                 67899**********999987776665554333 PP

>> Sigma70_r4_2  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.052   1.2e+02      31      50 ..     591     610 ..     591     613 .. 0.93
   2 ?    8.6   0.0   0.00065       1.5      10      40 ..     880     910 ..     879     912 .. 0.94

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.052
                   HHHHHHT--HHHHHHHHHHH CS
  Sigma70_r4_2  31 EIAellgisegtVksrlsRA 50 
                   +IA + +is ++V++ lsR+
    CCD25612.1 591 QIALEGEISKQSVRNSLSRG 610
                   699999*************7 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00065
                   TS-HHHHHHHHHHHTS---HHHHHHHHT--H CS
  Sigma70_r4_2  10 eLperqreifllryleglsykEIAellgise 40 
                   +L+  q++i+l + l+ +s++ I+++l+++ 
    CCD25612.1 880 SLSSVQSAILLAIGLQRKSIDNISKELNLPA 910
                   6999************************986 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.2   7.2e+03     119     140 ..      11      36 ..       5      39 .. 0.60
   2 ?   10.2   0.0   0.00032      0.72       4     122 ..     269     401 ..     267     406 .. 0.71
   3 ?    0.2   0.2      0.38   8.5e+02      39      93 ..     883     958 ..     873     996 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.2
      AAA_19 119 yrLlkallgekkk..lllvGDp..dQ 140
                  +L+++ +++k++  +++vGD+  +Q
  CCD25612.1  11 PALIRNGVQTKQRsfFVIVGDKarNQ 36 
                 5667766654433558999**73345 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00032
      AAA_19   4 ave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgaeatTiHrlal......................ld 79 
                 a++ ++ ++++++taG G GK+  l   +a +v+ g     +i + ++     k l e +       + + +l+                       +d
  CCD25612.1 269 AISeKTLNSTVALTAGRGRGKSAALGVSIAAAVSHGY---SNIFVTSPSPENLKTLFEFI------FKGFDALGYqehidydiiqstnpdfnkaivrVD 358
                 5654778899**********************99994...68999999999888888877......334444443444445555555555556666667 PP

      AAA_19  80 fddlltealelleeaeeekklqeeellivDEfqdvd.elqyrLl 122
                 +++   ++ +++   ++++ l ++el+++DE+  +  +  ++Ll
  CCD25612.1 359 IKRGHRQTIQYIIP-QDSHVLGQAELVVIDEAAAIPlPIVKNLL 401
                 77777777777654.45556655559999999888777777776 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.38
      AAA_19  39 gvkpeeillvaftgrAakelrerlaalgae.atTiHrlal.......................ldfddlltealellee 93 
                 +v+ + +l++ + +++ ++++++l   +++  +Ti  +a                        l++d++ ++  e +++
  CCD25612.1 883 SVQSAILLAIGLQRKSIDNISKEL---NLPaNQTIAMFAKimrkfsvyfrqvlsesidqslpvLQNDEIAEMNGEEIKQ 958
                 555566788889999999999999...6662579998887778888888888888888777774444444444444442 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.2e-05      0.12      14     130 ..     276     389 ..     256     392 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.2e-05
                 TCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET..TSSHHHHHHHHHTTCSEEEEEHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  14 ggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig..gvaardqlskldngvdivvgtpgrldd 110
                 +  v + a  G GK++a  + + ++v+         +++ +P+ e  +  ++ + k ++ ++++++  +   +++  d  +++  +vdi  g  + ++ 
  CCD25612.1 276 NSTVALTAGRGRGKSAALGVSIAAAVS----HGYSNIFVTSPSPENLKTLFEFIFKGFDALGYQEHIDYDiiQSTNPDFNKAI-VRVDIKRGHRQTIQY 369
                 4678899999*************9995....5777899****99988888888888888777777754444244444555555.89************* PP

                 HHHCTSSHCTTEEEEEEETH CS
                 xxxxxxxxxxxxxxxxxxxx RF
        DEAD 111 llstgklnlsqvrflVlDEa 130
                 ++ + +  l q +++V+DEa
  CCD25612.1 370 IIPQDSHVLGQAELVVIDEA 389
                 **777779***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1916  (0.106866); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.86u 0.27s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 7522.61
//
Query:       CCD25613.1  [L=186]
Description: hypothetical protein NDAI_0F02950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-10   41.1  17.1    1.8e-10   41.1  17.1    2.0  2  Nefa_Nip30_N    N-terminal domain of NEFA-interacting nuclear
  ------ inclusion threshold ------
       0.13   11.3   4.8       0.27   10.3   4.8    1.5  1  Man-6-P_recep   Mannose-6-phosphate receptor


Domain annotation for each model (and alignments):
>> Nefa_Nip30_N  N-terminal domain of NEFA-interacting nuclear protein NIP30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1  17.1     2e-14   1.8e-10       1     104 [.      33     128 ..      33     129 .. 0.91
   2 ?   -1.2   0.4      0.28   2.5e+03      24      24 ..     152     152 ..     129     185 .. 0.50

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 2e-14
  Nefa_Nip30_N   1 FvseseleeereerqeewekarkeleaerkkeeaeeeedgksLyerLqenkaaKqeefeeklklknqfraLdedEveFLdeveekkreeeerrkkee 97 
                   F+se++++ e++e++++ e+++ el+ +         +  ksL  +L++n  +K+++f++ +k +++f++L+++E++F++++e++k ++e+++++  
    CCD25613.1  33 FISEGNADLESQEAKAKIEQTKFELQGK---I-----RSRKSLRAQLRSNAISKNRKFNKLVKERESFNRLNKEEINFFKQIESEKLSKEKETERFL 121
                   8888888888888888888888888776...2.....3469******************************************************** PP

  Nefa_Nip30_N  98 eeeleeF 104
                   +++le+F
    CCD25613.1 122 QKKLENF 128
                   ******9 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.28
  Nefa_Nip30_N  24 e 24 
                   +
    CCD25613.1 152 N 152
                   1 PP

>> Man-6-P_recep  Mannose-6-phosphate receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.8     3e-05      0.27      13      85 ..     109     179 ..      96     182 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 3e-05
  Man-6-P_recep  13 geeskesekekallkrlePlknksfeakvkeekdkytyklrvCreveesaedagliqidkkdkketviGrine 85 
                    ++ ske+e+e+ l+k+le +++k+   k +++k++y+ +++  r+  e ++++g++++++k+ k+++  ++n+
     CCD25613.1 109 EKLSKEKETERFLQKKLENFDKKKK--KLEKTKSNYKPSIETVRNNLEVKQNIGVVKLKNKKLKTKLKIKLNQ 179
                    455788999999********99976..5678888*************************99998887666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3066  (0.171008); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1305.36
//
Query:       CCD25614.1  [L=375]
Description: hypothetical protein NDAI_0F02960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-13   51.1   0.0    2.2e-13   50.3   0.0    1.4  1  ADH_zinc_N    Zinc-binding dehydrogenase
    0.00039   20.3   0.2     0.0055   16.6   0.1    2.2  2  ADH_N         Alcohol dehydrogenase GroES-like domain
     0.0053   17.8   0.0     0.0096   17.0   0.0    1.4  1  ADH_zinc_N_2  Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0   3.7e-17   2.2e-13       1      90 [.     184     272 ..     184     324 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 3.7e-17
                 HHHHHHHHHHHHTT-..EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC CS
  ADH_zinc_N   1 gvGlaavqlAkalGa..eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg 90 
                 +vG++ +qlAk l+   ++i+v+s+++  + +k++Gade+++y+++d+ e+i +    ++++  ++cv +++t+++ +k+++++   +v  +
  CCD25614.1 184 AVGQMFIQLAKKLNGysKIIVVASKKHE-KVLKSYGADELFDYHDEDVIEQITKKY--NNIQQLVDCVSNPTTIQQTYKCAAKDAPATVLQL 272
                 69*********66665*****9999994.99999*********5559999999999..69***********************987777666 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   9.2e-07    0.0055       4      60 ..      33      88 ..      30      97 .. 0.86
   2 ?    1.8   0.0     0.036   2.1e+02      86     107 ..      95     116 ..      90     118 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 9.2e-07
                EEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS..--TT-EEE CS
       ADH_N  4 vlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk..lkvGdrVv 60
                vl+k +a + + +D + ++       +++ i+G +++G+++++gp+v++  +++Gd V 
  CCD25614.1 33 VLVKPEAIAGNPTDWKHIQW---KIGPQGSIVGCDVAGKIVKLGPNVDSneFHIGDSVY 88
                88888888889999988887...578999******************9888*****997 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.036
                 ETTTSS-SSSBSEEEECGGGEE CS
       ADH_N  86 llgvsldGgfaeyvvvpekklv 107
                  + + ++G+faeyv +++k ++
  CCD25614.1  95 SVRFPTNGAFAEYVGMDSKIAY 116
                 555669********99987666 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.6e-06    0.0096       2      68 ..     218     286 ..     217     311 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.6e-06
                   T-SEEEETTSTTHH.HHH-T.T-EEEEEES-HHHHH.HHHHHHE..EEEEEEEE----.S-EEE-CHHHCT CS
  ADH_zinc_N_2   2 GAdevidyrtedfe.aatgg.egvDvvldtvggealleaslkvl..pggGrlvsiggpplsaallkpakkr 68 
                   GAde +dy++ed+  + t++ ++++  +d+v ++++++++ k+   + +++++++    l++++ k++ +r
    CCD25614.1 218 GADELFDYHDEDVIeQITKKyNNIQQLVDCVSNPTTIQQTYKCAakDAPATVLQLVT--LTEKDIKEEDRR 286
                   9************9644444678999999999***********98633388765553..233333333323 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2821.62
//
Query:       CCD25615.1  [L=114]
Description: hypothetical protein NDAI_0F02970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-32  111.4   0.0    2.3e-32  111.2   0.0    1.1  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.2   0.0   1.3e-36   2.3e-32       4      94 .]      22     111 ..      19     111 .. 0.97

  Alignments for each domain:
  == domain 1  score: 111.2 bits;  conditional E-value: 1.3e-36
                 BB-TTCEEEEEEEEEETTSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   4 eakegdtVtvhykgkledgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 ++k gd Vt+hy+g+le+g++fdss++r++p+++++G gqvikG++ ++ +++vGek++ltip  +aYge+g  +g ipp atL+F+veLl
  CCD25615.1  22 FPKVGDLVTIHYTGTLENGQKFDSSLDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGAYAYGERGF-PGLIPPMATLIFDVELL 111
                 6899*********************************************************************.889************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       183  (0.0102069); expected 358.6 (0.02)
Passed bias filter:                      177  (0.00987227); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 903.09
//
Query:       CCD25616.1  [L=612]
Description: hypothetical protein NDAI_0F02980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-37  128.3   7.3    1.4e-37  128.3   7.3    4.4  4  Eaf7      Chromatin modification-related protein EAF7


Domain annotation for each model (and alignments):
>> Eaf7  Chromatin modification-related protein EAF7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   7.3   7.8e-42   1.4e-37       1     106 []       9     163 ..       9     163 .. 0.98
   2 ?   -2.9   1.1       0.5   8.9e+03      82      85 ..     192     195 ..     176     222 .. 0.48
   3 ?   -6.5   5.8         1   1.8e+04      74      74 ..     418     418 ..     341     488 .. 0.67
   4 ?   -1.7   0.6      0.22   3.9e+03      78      83 ..     533     538 ..     501     571 .. 0.60

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 7.8e-42
        Eaf7   1 deirLfkliiefkPaGihKhFrmlaiverlnkpdky..tllqkekpksgkhtsiediwekLktlYdLkaldelenekeeeeeeeekekee......... 88 
                 deirLf+++++fkPaGihKhF+ml+iver+n+pdky  +llqke++k gk+++++diw++L+++Yd++++d+lene++++e++++k++ +         
  CCD25616.1   9 DEIRLFRWVAQFKPAGIHKHFHMLCIVERMNHPDKYpmILLQKEVVKPGKIFTAKDIWDRLNRYYDFDEADKLENEVPAMEDDTTKDNITkhdnnhadq 107
                 79***********************************99**********************************************99999999****** PP

        Eaf7  89 ......................................kakeleekkdFeLPedey 106
                                                       k+k l++k+dF+LP++ey
  CCD25616.1 108 enkipkdennnnnhnsnieeeydfddsyqeeemtllklKYKLLTQKRDFALPWAEY 163
                 ******************************************************98 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.5
        Eaf7  82 eeke 85 
                 ee++
  CCD25616.1 192 EENK 195
                 1111 PP

  == domain 3  score: -6.5 bits;  conditional E-value: 1
        Eaf7  74 e 74 
                 +
  CCD25616.1 418 T 418
                 1 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.22
        Eaf7  78 eeeeee 83 
                 e+++e+
  CCD25616.1 533 EAQDEK 538
                 111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2298  (0.128172); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.16u 0.30s 00:00:01.46 Elapsed: 00:00:00.49
# Mc/sec: 3757.73
//
Query:       CCD25617.1  [L=488]
Description: hypothetical protein NDAI_0F02990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-16   59.0   0.0    6.1e-16   57.9   0.0    1.6  1  S4        S4 domain
     0.0055   16.7   0.9       0.21   11.7   0.1    3.2  3  LysM      LysM domain
  ------ inclusion threshold ------
       0.02   14.7   0.0      0.041   13.7   0.0    1.4  1  S4_2      S4 domain


Domain annotation for each model (and alignments):
>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0     1e-19   6.1e-16       2      47 ..     109     154 ..     108     155 .. 0.98

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 1e-19
                 EHHHHHHHTTSSSSHHHHHHHHHTTTEEETTEEE--TT-EE-TTCE CS
          S4   2 RLdkvlarlglassrreArqlIehGrVlVNGkvvkdpsyrVkpgDv 47 
                 RLd  ++r+ +ass r+Arq+I hG V+VNG ++k p++++kpgD+
  CCD25617.1 109 RLDFAIFRAMFASSVRQARQFILHGNVRVNGIKIKHPGFTLKPGDT 154
                 9********************************************6 PP

>> LysM  LysM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.1     6e+02       2       9 ..     148     155 ..     135     157 .. 0.60
   2 ?    0.1   0.0      0.15   8.8e+02      14      33 ..     188     216 ..     185     218 .. 0.78
   3 !   11.7   0.1   3.4e-05      0.21       9      31 ..     343     365 ..     342     371 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.1
                 EE-TT--H CS
        LysM   2 tVkkGDTL 9  
                 t k+GDT 
  CCD25617.1 148 TLKPGDTF 155
                 45566654 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.15
                 HHC.........TCHHHHHHHHCTCSSCG CS
        LysM  14 kry.........gitveklleaNnlsspd 33 
                 ++y         ++++ k++++++l+ ++
  CCD25617.1 188 NKYvkeakenprSVWEAKIKKYQGLDESN 216
                 566666666688999*********99876 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 3.4e-05
                 HHHHHHHCTCHHHHHHHHCTCSS CS
        LysM   9 LwsIAkrygitveklleaNnlss 31 
                 L++IAk+y+++++++ + N+  +
  CCD25617.1 343 LSTIAKKYQTSISQFYRTNKAAN 365
                 89***************997655 PP

>> S4_2  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   6.8e-06     0.041      25      60 ..     125     160 ..     117     163 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.8e-06
        S4_2  25 eaKafiaegeVkvNGevetrRgkKlraGdvVeidge 60 
                 +a++fi  g+V+vNG + +  g  l +Gd+ ++   
  CCD25617.1 125 QARQFILHGNVRVNGIKIKHPGFTLKPGDTFSVHSS 160
                 8****************************9988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1259  (0.0702214); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3309.25
//
Query:       CCD25618.1  [L=560]
Description: hypothetical protein NDAI_0F03000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-110  370.0   6.4   1.6e-110  369.6   6.4    1.2  1  CAP_N     Adenylate cyclase associated (CAP) N terminal
    3.4e-60  202.2   1.7    5.6e-60  201.5   1.7    1.4  1  CAP_C     Adenylate cyclase associated (CAP) C terminal
     0.0079   15.3   1.7     0.0079   15.3   1.7    1.7  2  DEC-1_N   DEC-1 protein, N-terminal region
  ------ inclusion threshold ------
       0.24   11.1   2.1       0.47   10.2   1.4    1.9  2  TBCC      Tubulin binding cofactor C


Domain annotation for each model (and alignments):
>> CAP_N  Adenylate cyclase associated (CAP) N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  369.6   6.4  3.5e-114  1.6e-110       2     315 ..      19     369 ..      18     371 .. 0.87

  Alignments for each domain:
  == domain 1  score: 369.6 bits;  conditional E-value: 3.5e-114
                 XXXXXXXXXXXXXXXX..........................XXXXXXXXXXXXXXXXXXXXXXXSXH.........................HHHHHH CS
       CAP_N   2 tlikRLEaatsrLEdiais................essssasskasssssaaaaaaaaaakaaaaaaaa........................ksveaF 60 
                 +l+kRLE+atsrLEd++i+                       ++a++s ++ ++++ a          +                        ksv +F
  CCD25618.1  19 KLLKRLEDATSRLEDVTIYqegyiqskiqkasaaaG------TSAQASIASDKDSKIA----------SasntkqppkpedfteaielkkdqpKSVIEF 101
                 79***************9988888766554332210......1111111111111111..........1111223345567888899999999****** PP

                 HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHBE---...HHHHHHHCHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHCGGGGGGG CS
       CAP_N  61 delisgsvkefvelskkiggevaeqaelvkkafeaqrkfllvaskakkPad..seelqelLkplseaiqkvqeireknrksklfnhLsavsegipalgW 157
                 +++i++sv++++elsk+i+++v + ++l++ af++q +++++++ +kkP d  s+++++ Lkp+++ai+k++e+++++r+sk+f++L+a+ eg+p+++W
  CCD25618.1 102 KNFIKNSVDPILELSKDIDPTVTDSMKLISLAFDSQLRLIKISTVSKKP-DytSTDFTNTLKPINDAIMKINELKDTHRQSKYFSYLNAITEGAPLFSW 199
                 *************************************************.77*********************************************** PP

                 GG--S-HHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHSTTS----.TTSBE....................SSC--XXX CS
       CAP_N 158 vavepkPapyvkemkdaaqFYtNrVlkeykekdkkhveWvksflqilkeLqaYvkeyhttGltWn.kkGkdaeealk.............aaaaaasaa 242
                 +av+ +P ++ +++kdaaqF+tNrVlke+k++d+++v Wvk flq++++L++Yvkey t+Gl Wn ++G+++ +a+k             +++a+a+a+
  CCD25618.1 200 IAVT-TPLSLLTDFKDAAQFWTNRVLKEFKDSDPNSVVWVKLFLQMFDDLKTYVKEYQTNGLDWNnATGMEFLAAVKqelstststststSTSAPAPAP 297
                 ****.***********************************************************879******99999******999975444444455 PP

                 XXXX....XXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXX CS
       CAP_N 243 aaggpppPpPpPppasvfeeesaaasasaaaggmsavFaeLnkGeaiTkgLkkVdksqkThKnPslrasstvp 315
                 +agg ppPpPpPppas+ e +s+++ asa+++g++avFaeLn+Ge+iTkgLkkVdksq+ThKnP+lrasstvp
  CCD25618.1 298 SAGG-PPPPPPPPPASIYEIKSTSEPASAQEQGIGAVFAELNQGENITKGLKKVDKSQQTHKNPQLRASSTVP 369
                 5555.7888899999999999999***********************************************98 PP

>> CAP_C  Adenylate cyclase associated (CAP) C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.5   1.7   1.2e-63   5.6e-60       1     157 []     397     558 ..     397     558 .. 0.97

  Alignments for each domain:
  == domain 1  score: 201.5 bits;  conditional E-value: 1.2e-63
       CAP_C   1 kppklelegnkwlvenqe......nnkeieieetelkqsvyifkCknstiqikgKvnaitldnckkvsvvvdsvvSsvevincksvkvqvlgkvptisi 93 
                 kp+++el+gnkw+ven+e      +n++i ie  ++++s++i kC++++iqikgKvnait++++ ++s+v+ds++S++++i+++++ +qv +++p+isi
  CCD25618.1 397 KPARKELSGNKWFVENYEksdlkdTNEPIIIE-GNKDESIFIGKCSDIMIQIKGKVNAITFNETINCSLVLDSCISGLDIIKSNKFGIQVIESLPQISI 494
                 79***************97777766669***8.****************************************************************** PP

       CAP_C  94 DktdgvqiyLskesldteivtsksseinvsvpkeedgdykElpipeqfktkikkgklvtevveh 157
                 Dk++g++iyLsk+sl+te++ts+s+ inv++p +ed+d++E+pipeq+k++++kgkl+++v+eh
  CCD25618.1 495 DKSEGGNIYLSKDSLNTEVYTSCSTTINVNLPVGEDDDFVEFPIPEQLKHTFDKGKLESTVFEH 558
                 *************************************************************998 PP

>> DEC-1_N  DEC-1 protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.27   1.2e+03     198     213 ..      49      64 ..      35      88 .. 0.77
   2 !   15.3   1.7   1.8e-06    0.0079      59     153 ..     228     338 ..     206     373 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.27
     DEC-1_N 198 sqaaaGsdaqasdise 213
                  +aaaG+ aqas  s+
  CCD25618.1  49 ASAAAGTSAQASIASD 64 
                 4678899999987665 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 1.8e-06
     DEC-1_N  59 gtpalnpldfaallGqli.nlqalpqdlllppmdlgpqvG.aalqsl....lplqsldgllGaaapapalaa..app.papapvp........ddpapa 140
                     +n   ++ l  q+  +l++  ++++ +  d +   G ++l+ +     + +s ++   ++apapa++a  +pp p+p p +         +pa a
  CCD25618.1 228 KDSDPNSVVWVKLFLQMFdDLKTYVKEYQTNGLDWNNATGmEFLAAVkqelSTSTSTSTSTSTSAPAPAPSAggPPPpPPPPP-AsiyeikstSEPASA 325
                 55678999999999999988999999999999888866552344444322144444444455567887777732344133333.247765544444444 PP

     DEC-1_N 141 paapqaaafaffn 153
                  +    a fa +n
  CCD25618.1 326 QEQGIGAVFAELN 338
                 4444444555544 PP

>> TBCC  Tubulin binding cofactor C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.6   7.1e+03      70      85 ..     104     119 ..     101     120 .. 0.81
   2 ?   10.2   1.4    0.0001      0.47       2      72 ..     433     505 ..     432     519 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.6
                 E---SSEEEEES-BSE CS
        TBCC  70 ylltksrPiiedskgi 85 
                 ++  + +Pi+e sk+i
  CCD25618.1 104 FIKNSVDPILELSKDI 119
                 6667789*****9998 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0001
                 -EEEE-S-BS-EEEE-S--S-EEEES-BS-EEE----SS-EEEES-BS..-EEE---SEEEEES-BS-EEE-- CS
        TBCC   2 ssvkisnlsdctiylldplssvtiddcknctivlgpvsgsvfiedcen..ctivvacrqlrihdctnvdvyll 72 
                 +s+ i ++sd  i++ ++++++t+++  nc +vl  + + + i + ++  ++++ +  q++i +++  ++yl+
  CCD25618.1 433 ESIFIGKCSDIMIQIKGKVNAITFNETINCSLVLDSCISGLDIIKSNKfgIQVIESLPQISIDKSEGGNIYLS 505
                 678899****************************999999999888872245555667888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4166.72
//
Query:       CCD25619.1  [L=281]
Description: hypothetical protein NDAI_0F03010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0062   16.9   0.5     0.0062   16.9   0.5    2.2  2  S-antigen  S-antigen protein
  ------ inclusion threshold ------
      0.072   14.0   0.8       0.21   12.5   0.8    1.8  1  WRNPLPNID  Putative WW-binding domain and destruction box


Domain annotation for each model (and alignments):
>> S-antigen  S-antigen protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.5   6.9e-07    0.0062      18      72 ..      28      86 ..      13     101 .. 0.74
   2 ?   -0.0   0.5      0.13   1.2e+03      36      57 ..     134     155 ..     108     183 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 6.9e-07
   S-antigen 18 iyktygkvkntd.....qelsniygikyylrnglldkkngkgqkyedleeeenddeedsn 72
                +++ + kvk+ +     qe+ n    +y+ rn   + +n k  k++d +e+ ndd++d  
  CCD25619.1 28 MWRYFPKVKKEQleidlQEVGNRRNQRYWKRNR-NNSNNRKSMKFNDENENANDDDDDDA 86
                455566666543222247888999999999996.7899*************999887754 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.13
   S-antigen  36 ygikyylrnglldkkngkgqky 57 
                     y+ r+  l +kn kg+  
  CCD25619.1 134 QDSLYHKRQDRLPNKNSKGNMI 155
                 4445666667777777777754 PP

>> WRNPLPNID  Putative WW-binding domain and destruction box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.8   2.3e-05      0.21      16      61 ..      40      85 ..      29      91 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.3e-05
   WRNPLPNID 16 idleLeeLllldse...aeessegesvdedeeaeee..eeeeeeeedeeds 61
                ++ +L+e ++ +++   ++++++ +  ++   ++++  +e+e+ ++d++d+
  CCD25619.1 40 LEIDLQEVGNRRNQrywKRNRNNSN--NR---KSMKfnDENENANDDDDDD 85
                6669999999888766522222111..22...2222334444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1157  (0.0645323); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2181.69
//
Query:       CCD25620.1  [L=105]
Description: hypothetical protein NDAI_0F03020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-31  106.9   0.9    5.4e-31  106.5   0.9    1.1  1  SF3b10    Splicing factor 3B subunit 10 (SF3b10)


Domain annotation for each model (and alignments):
>> SF3b10  Splicing factor 3B subunit 10 (SF3b10)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.9     3e-35   5.4e-31       1      75 [.       3      80 ..       3      82 .. 0.96

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 3e-35
                XXXXXXXXXXXXXXXXXXXXXXXX--HHHHHHHHHHHHHHHHH-HHHHHHHHHHH...T--HHHHHHHHHHCTSSTT- CS
      SF3b10  1 DklreqqqlehlkskYvGtGhadttkeEWltnihRDtyaSlvgHsalleYfaiae...neskarvrlellekmlqpcg 75
                Dk+reqqq+++lk+kYvG+G+++ttk+EWltn++RDty+Sl+gH alleY+++++    ++ka +r+el++km++ ++
  CCD25620.1  3 DKQREQQQYRTLKQKYVGLGDENTTKDEWLTNVQRDTYNSLQGHAALLEYITLGQedrVRTKAGMRVELIKKMASIVD 80
                9*****************************************************9888899************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      236  (0.013163); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 746.50
//
Query:       CCD25621.1  [L=1654]
Description: hypothetical protein NDAI_0F03030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.6e-176  587.2  20.8   4.6e-176  587.2  20.8    2.6  3  THOC2_N   THO complex subunit 2 N-terminus
    4.5e-33  114.7   8.7    4.5e-33  114.7   8.7    4.6  4  Tho2      Transcription factor/nuclear export subunit protein
    1.4e-20   73.1   0.1    4.9e-20   71.4   0.1    2.0  1  Thoc2     Transcription- and export-related complex subunit


Domain annotation for each model (and alignments):
>> THOC2_N  THO complex subunit 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  587.2  20.8  7.7e-180  4.6e-176       3     630 .]      36     681 ..      34     681 .. 0.94
   2 ?   -2.2   0.0       0.2   1.2e+03     573     595 ..    1095    1117 ..    1084    1124 .. 0.86
   3 ?    0.6   0.3     0.028   1.7e+02      17     146 ..    1118    1252 ..    1103    1255 .. 0.71

  Alignments for each domain:
  == domain 1  score: 587.2 bits;  conditional E-value: 7.7e-180
     THOC2_N   3 deviasWessgrqelveklk.qarsdededelsslfqellrsvlderls.....pedagsfvkeilkeeseesekskaedvaklfldvvsvldeeedla 95 
                 ++ i++W ++ +++l++k++  +++de+ed+l+++fqel++++l++ ++     +++++++++e++ ++s  s+++ +++v+klf++v+s+++   +  
  CCD25621.1  36 TNNIQNW-ETTHADLCSKFSnLQTDDEKEDWLKKFFQELFEIILQNITNkvtlpLQKIAKTINELCLTKSPGSRTNYSSMVGKLFIAVSSSIPTISN-- 131
                 689****.899999*****999*********************98665588899**************************************88887.. PP

     THOC2_N  96 kllrklla.....atiiseslmreeldskllqelglvrdt.vferklirkstnllYrqkkyNLLrEeseGYSkLitelft.tsdseepseekaeetler 187
                   +++ll      + i +e +++++l+skl+      +++ ++ r+l++ks+   Y++kk+NL++E+s GYS+L +++f+ +sds+  ++ k++++l++
  CCD25621.1 132 TGTTDLLIllksiPMIQDEIFKFSWLSSKLI-----SKNQtALLRHLLKKSK---YELKKFNLFFENSVGYSELAVLFFMaYSDSD--NFIKIDYYLDQ 220
                 55555555577999*****************.....888889**********...*************************777777..9********** PP

     THOC2_N 188 vkaliGkFdLDpgRvLDviLdvfaavvvkqyrffvklLrasswwPrdeesewieetktlppggnrvaAqlLgfklr.................fysse. 268
                 ++ +iGkF+LD+ R LD++L v++++++++yrf++++L++s++wP++             + +n vaA++++f l+                     e 
  CCD25621.1 221 MYMIIGKFSLDSLRSLDLFLIVSNEYLTNHYRFIIEFLKRSDFWPKS-------------DVENIVAANIVAFYLNknnsvtnsneeftnqeeE---Ee 303
                 **********************************************3.............589*************999999999986665550...04 PP

     THOC2_N 269 .......addelpenllylaAlLIkiGfislsdlYphLspddeemealkekyekeleekssekgsanaLamagaLsdddDtep..........kkekea 350
                        +++e+ +n+++l++lLIk+Gfi++ +l+++L p+ e++e++ +++e++le  s++ g +n+Lama+aL++ddD++           k+e  +
  CCD25621.1 304 diqrsnnHQTEFVDNYIDLCCLLIKNGFIEFLTLWHNLVPEIEDLESFLDDFENNLELASMK-GIENPLAMAAALTMDDDDNYssdkrsrnvqKEEGIE 401
                 555556799*****************************************************.*************9999998*******998888888 PP

     THOC2_N 351 kkkekakkkeeeekeeepepeklkd.qkiqLlkaLLaiGalpeslfiLgryPwlaevdpeipelihRilehsleplyesvravplsseekvaedqsglp 448
                  + e+++k+e+ eke+e+++ ++ + +ki+Llk+LL++G+l+es+fiL++yP++  +d+eip+l++Ri+e+++ep+ye+++++++ +++      ++l+
  CCD25621.1 402 VAVEETDKEEKLEKEKENIRLRMLNsGKIKLLKRLLTHGCLEESIFILQKYPRVKLIDDEIPKLLVRIFEYIIEPMYEKTQFSRSINRD------NALS 494
                 999999999999*********************************************************************99988888......6666 PP

     THOC2_N 449 kgskvkltesp....kkrllrwpktdkple.ldlnkkyrFyydeWkdnlpvcqtvddvfklckellkllGvklgkdpeLlsklcrIgkksleeedesee 542
                 ++s++  +e++    k++l+++ k+++p++ ++ln++++Fyy+eW++nl+++++++++fk+++el++llG++l+k p+L++klcrIg+ ++ e++es+e
  CCD25621.1 495 TASSLIAVENEilsvKPKLYTELKVHDPFCpFELNTSFQFYYPEWSQNLKQVNSMEEFFKISHELYSLLGPSLAKGPTLITKLCRIGIFDIYENKESTE 593
                 666677888888999************************************************************************************ PP

     THOC2_N 543 nrerWldllrrlllPalsllkenpgvvdevyeLlklfplekRYslYgewfegltsrlpeikaafakaeketkdiLkrlSkenikqmaR 630
                 ++e+W+d++r++++P++++l++np+v++e+y+++k+fp+e+RY++Y+e++++l+++++ ik++f+kae+e+k  Lk lS+++i+q+aR
  CCD25621.1 594 TIEKWVDYVRTFIFPTIPVLESNPMVTTEIYSIMKFFPFERRYFMYNEMMTKLSQDSLIIKVNFNKAEREAKVKLKILSTDTIDQEAR 681
                 **************************************************************************************99 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.2
     THOC2_N  573 yeLlklfplekRYslYgewfegl 595 
                  y +l+ f++++ +++Yg +f+++
  CCD25621.1 1095 YFILQVFDTQNMFEIYGILFNSK 1117
                  789**************999876 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.028
     THOC2_N   17 lveklkqarsdededelsslfqellrsvlderls....pedagsfvkeilkeeseeseksk.........aedvaklfldv.vsvldeeedlakllr 99  
                  ++ +l  + ++ ++++l  +f +ll+s++ +r +     e+++++++ +++ +++               +   +  f+ + ++v+++ ++   l++
  CCD25621.1 1118 ILPTLLFSCTTSEASNLGIFFMNLLESLESNRKQsqytNEECQQIFTWYCSLTDQI----VqllmeknymSIRNGIEFMRLaSNVFPVIDSHIGLVS 1210
                  55566666777788889999999999999988886666344444433333332222....1222344466666677777641678888888999*** PP

     THOC2_N  100 kllaatiiseslmreeldskllqelglvrdtvferklirkstnllYr 146 
                  k+l+a+ +se+    +l ++ l  lg ++   + ++l++++   +Y+
  CCD25621.1 1211 KILEANLVSEEREDIILPTNAL--LGHLKAR-LRKHLVKEED--VYK 1252
                  ***********99999999999..9999999.9999999876..555 PP

>> Tho2  Transcription factor/nuclear export subunit protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4      0.34   2.1e+03      42      95 ..     380     433 ..     359     448 .. 0.74
   2 ?   -2.8   0.1      0.46   2.8e+03     229     263 ..     751     785 ..     741     811 .. 0.80
   3 !  114.7   8.7   7.5e-37   4.5e-33       6     301 .]     986    1236 ..     983    1236 .. 0.92
   4 ?   -3.3   7.4      0.67     4e+03      48      96 ..    1257    1306 ..    1238    1326 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.34
        Tho2  42 akdrsderaaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkeekkswf 95 
                 + d++ ++++ +++ ++++ ++  +e+  +E+k ++e+ +  +++L++ k +++
  CCD25621.1 380 DDDDNYSSDKRSRNVQKEEGIEVAVEETDKEEKLEKEKENIRLRMLNSGKIKLL 433
                 334444467778888888888888888888888888888888888877666555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.46
        Tho2 229 kwhkkilkalkscleskeymeirNaiivLkkvlev 263
                  w +++ + +    +++  m i N+i+ ++k l++
  CCD25621.1 751 TWVSRLATFIAGLAKNSPNMDITNIITYITKTLHN 785
                 6889999999999999999********99998876 PP

  == domain 3  score: 114.7 bits;  conditional E-value: 7.5e-37
        Tho2    6 pefyvtFWslslyDiyvpkeqYekeieklkseieelakdrsderaaakkkkkekkrlkeliekLeeEkkeqiehvekvkkrLkeekkswfkndekkk 102 
                  ++f+ tFW+lslyDi + k  Y++  e l++e  ++               ++k+ l ++i++L     ++++  +k+k++++  k    +   + +
  CCD25621.1  986 KDFFITFWKLSLYDIRFDKTLYDELKEDLETEKLKC------------TFARRKHILSNHIKELLINCISHQRTFNKTKQMFEGTKTAGYE---RFS 1067
                  68**********************999999955555............3467888899****************************99888...788 PP

        Tho2  103 keitdallqrcilPRlllsplDAlycakfvkllhelktpnFstldlldrlfkan.liplifscTerEaenlgrFlneilkdlkrWhkdeeayekeal 198 
                  +  + ++lq ci+PR+++sp DAly++ f+  + +++    ++++++  lf+++ l +l+fscT +Ea+nlg+F+ ++l+ l++ +k+++  ++e+ 
  CCD25621.1 1068 EGEIRTFLQFCIIPRAIFSPSDALYSSYFILQVFDTQ----NMFEIYGILFNSKiLPTLLFSCTTSEASNLGIFFMNLLESLESNRKQSQYTNEEC- 1159
                  8889*************************98887665....799****************************************996665555555. PP

        Tho2  199 kkdlpgfqkklkeegkekelkyeqfrkvlkkwhkkilkalkscleskeymeirNaiivLkkvlevFPavknsgekvlnaveklakqekreDlkvlan 295 
                                            + ++ w  +++ ++++ l +k+ym+irN i +++  ++vFP+++++   v + +e    +e+reD+ +  n
  CCD25621.1 1160 --------------------------QQIFTWYCSLTDQIVQLLMEKNYMSIRNGIEFMRLASNVFPVIDSHIGLVSKILEANLVSEEREDIILPTN 1230
                  ..........................67899****************************************************************** PP

        Tho2  296 sllkll 301 
                  +ll++l
  CCD25621.1 1231 ALLGHL 1236
                  **9987 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 0.67
        Tho2   48 eraaakkkkkekkrlkeliekLeeEkkeqiehvek.vkkrLkeekkswfk 96  
                  er+a++ +++e++++k+ ++ L++Ekke + +++  ++k+ +ee+++ ++
  CCD25621.1 1257 ERKAKELHDAEIEEIKAYHTLLQNEKKETELRKKLeFNKKRREESQKRVA 1306
                  37788889999999999999999999998877653244444444444443 PP

>> Thoc2  Transcription- and export-related complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.1   8.2e-24   4.9e-20       2      76 .]     684     757 ..     683     757 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.4 bits;  conditional E-value: 8.2e-24
       Thoc2   2 aklshsnPlivfevvlsqiesYdnlievvvdalkyltslsyDvLtyclleaLanserervkedglnlskWlqsLa 76 
                 +kl+++nPl+++  +++qie+Yd+++e+++ ++k +++++yDvL+y++l++L+ + r +v+ dg+n+++W+++La
  CCD25621.1 684 SKLISTNPLATLVPIVKQIENYDKVAELIIITTKLFNDFAYDVLQYVILSRLTLT-RPAVQFDGVNQATWVSRLA 757
                 89****************************************************8.*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1591  (0.0887389); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.96u 0.26s 00:00:01.22 Elapsed: 00:00:00.47
# Mc/sec: 10683.64
//
Query:       CCD25622.1  [L=410]
Description: hypothetical protein NDAI_0F03040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-07   30.3   0.0    8.6e-07   29.2   0.0    1.6  1  C2        C2 domain


Domain annotation for each model (and alignments):
>> C2  C2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   4.8e-11   8.6e-07       1     103 []      11     116 ..      11     116 .. 0.91

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 4.8e-11
                 TEEEEEEEEEESSSSSSTTSSCEEEEEEEEECEEEEEE-SC.SSSSSSEEEEEEEEEESCHTTSEEEEEEEEECSSSTEEEEEEEEEEGHH...HHTTH CS
          C2   1 gklevtvieAknLpnkdkkgssdpyvkvsldgkqkakTrvi.knslnPvWnekftfevaeleeakLeveVfdndrlskddfiGkveiplst...llsge 95 
                 g+l+v+v +A++Lpn  k  + ++  ++ + g+ ++++++  +   nPv++   +f+++++ +  + veV+ +++ ++   iGk+ei+l +    + +e
  CCD25622.1  11 GTLSVYVSKARDLPNLIKLDKQNVMLRLRI-GHMTRESDTLyRAGQNPVFDYLERFDITPEVKPIMYVEVYCDRKKKGPLPIGKCEIDLLNgirADPKE 108
                 689*************99999*********.999999998778889*****9999999**9***********888677778*******99988889999 PP

                 HHHEEEEH CS
          C2  96 eaegwypl 103
                  +  wy+l
  CCD25622.1 109 GYCTWYEL 116
                 99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       709  (0.0395449); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3022.07
//
Query:       CCD25623.1  [L=267]
Description: hypothetical protein NDAI_0F03050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-54  185.5  19.9    1.7e-54  185.5  19.9    1.9  2  RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc3
  ------ inclusion threshold ------
        1.6    8.7   9.0       0.27   11.2   5.0    1.6  2  Lipoprotein_6    Lipoprotein


Domain annotation for each model (and alignments):
>> RNA_pol_3_Rpc31  DNA-directed RNA polymerase III subunit Rpc31
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5  19.9   1.9e-58   1.7e-54       1     226 []       4     252 ..       4     252 .. 0.84
   2 ?   -1.8   0.4      0.35   3.1e+03     202     214 ..     252     263 ..     252     263 .. 0.76

  Alignments for each domain:
  == domain 1  score: 185.5 bits;  conditional E-value: 1.9e-58
  RNA_pol_3_Rpc31   1 Rgggrgrgggrsgnleelpwglg.eelgeepdtapselfPplslpvakplteeersqvslyrklreqihdgpfytqkrtkks.lsaeeke.s.. 89 
                      R+ggrg+ggg+++ +++lp+glg +++g +    + ++fP+++lp + p++++ers++ +y+k+ ++++d+pfy    t++  l +e ++ +  
       CCD25623.1   4 RQGGRGGGGGGNSYMKTLPFGLGySDVGYN----HITEFPSIPLPLNYPISSRERSRAVTYIKFIQSVKDSPFY----TGALpLPSELQQeHel 89 
                      78888888899***********97666777....9***************************************....4554433333332356 PP

  RNA_pol_3_Rpc31  90 ......................kkgakekatfdpft.gierYsdkylkkertlpklderpyvkefFPkELwptlkdgkdekkeikgkskkkk.. 158
                                            +++++++ t+d+f+ gierYsd+ylkk+++++++d++py++e+FPkEL+++++ +k++  +i++ s+k    
       CCD25623.1  90 edeyevdqdgkkrkknkkksssSNAMTQELTEDGFNdGIERYSDRYLKKRKITTSIDDHPYHLEIFPKELYSVMGINKKKLLNINKFSNKDDif 183
                      789******************9999*************************************************73333222355555555589 PP

  RNA_pol_3_Rpc31 159 .eadeedeegkelleklkelaeeeddee..ekkekedeeeeeeeeeddefddddedggDYNaekYFDnGdd 226
                       ++ +++++g ++leklkelae++d++e  ++++k+   ++e + eddefdd++ d++DYN ekYFDnGdd
       CCD25623.1 184 tGSIQDEKAGLSMLEKLKELAEDVDEDEnaDQDTKKSLVDHE-DVEDDEFDDES-DNDDYNGEKYFDNGDD 252
                      855677777*****************8765555555555555.99******777.7**************8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.35
  RNA_pol_3_Rpc31 202 ddefddddedggD 214
                      dd++ d++ dggD
       CCD25623.1 252 DDDYGDEE-DGGD 263
                      79999665.7888 PP

>> Lipoprotein_6  Lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.24   2.1e+03      75     113 ..      88     128 ..      72     149 .. 0.59
   2 ?   11.2   5.0     3e-05      0.27      62     130 ..     159     226 ..     136     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.24
                    T---TT.....THHHHHHHHH..HHHHHHHHHHHTHHHHSS CS
  Lipoprotein_6  75 aLekeaekfnelkakvvavkk..kseaflnklkekhadlgk 113
                    +Le+e e +++ k++  + kk  +s+a+++ l e+  + g+
     CCD25623.1  88 ELEDEYEVDQDGKKRKKNKKKssSSNAMTQELTEDGFNDGI 128
                    56666665555555544444311345555555555555455 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 3e-05
                    HHHHHHHHHHHHHT---TT.....THHHHHHHHHHHHHHHHHHHHTHHHHSSS---HHHHHHHH-TTSS CS
  Lipoprotein_6  62 vfsvilavktklkaLekeaekfnelkakvvavkkkseaflnklkekhadlgkedatDedakkailksng 130
                     +sv+   k+kl +++k ++k++ +   + +  k++ ++l+klke   d+  ++ +D+d kk ++ +++
     CCD25623.1 159 LYSVMGINKKKLLNINKFSNKDDIFTGSIQDE-KAGLSMLEKLKELAEDVDEDENADQDTKKSLVDHED 226
                    589999999**********9999999888875.578899***********************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1748  (0.0974957); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 1989.57
//
Query:       CCD25624.1  [L=128]
Description: hypothetical protein NDAI_0F03060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-14   52.8  10.1    3.3e-11   43.3  10.1    2.0  1  PGA2      Protein trafficking PGA2
  ------ inclusion threshold ------
       0.42   10.8   1.4        4.5    7.5   0.3    2.5  2  DUF1378   Protein of unknown function (DUF1378)


Domain annotation for each model (and alignments):
>> PGA2  Protein trafficking PGA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3  10.1   3.7e-15   3.3e-11       6     137 ..      14     126 ..      10     127 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 3.7e-15
        PGA2   6 esfssltakdwirlvlivggYlllRPYleklfkklq.ekqrekeeekeeaeekaakkakvspnalRggeaksgesdedddegeeeedvakasgvpewgk 103
                 ++f++ +ak+ irlv++vg+Y+++R Y+ k  +k q e+q +++e++  +e+k+         +l +           +de+ +      ++++  wg+
  CCD25624.1  14 NTFADFDAKKGIRLVIVVGAYIFIRNYVAKELAKKQlERQAREDEHRISKEKKE---------KLID---------VPEDEKKS------ETTAFGWGN 88 
                 6899************************87554444044444444444333333.........3444.........44455433......68999**** PP

        PGA2 104 karkrqkkvlkkleeeae....erkkeeeddkdiaelL 137
                 k r+r kk+ + le++ e    ++ ++e++d di++lL
  CCD25624.1  89 KTRRRVKKQEEILEKAVEnlqrRQLDDEDSDADIQDLL 126
                 ***************9999987777899999*****99 PP

>> DUF1378  Protein of unknown function (DUF1378)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.3    0.0005       4.5      18      43 ..      27      52 ..      25      83 .. 0.87
   2 ?    1.9   0.0     0.029   2.6e+02      26      39 ..     103     116 ..     102     120 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0005
     DUF1378 18 LYLvsGGYkviRnyiRrkiDkaaaek 43
                L +v G Y  iRny+ +++ k+  e+
  CCD25624.1 27 LVIVVGAYIFIRNYVAKELAKKQLER 52
                67899**********99887776654 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.029
     DUF1378  26 kviRnyiRrkiDka 39 
                 k++ n  Rr++D+ 
  CCD25624.1 103 KAVENLQRRQLDDE 116
                 7899********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2236  (0.124714); expected 358.6 (0.02)
Passed bias filter:                      790  (0.0440627); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 1023.49
//
Query:       CCD25625.1  [L=217]
Description: hypothetical protein NDAI_0F03070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-76  255.6   0.0    3.4e-76  255.3   0.0    1.0  1  UPRTase       Uracil phosphoribosyltransferase
  ------ inclusion threshold ------
      0.013   15.0   0.0      0.015   14.8   0.0    1.2  1  Pribosyltran  Phosphoribosyl transferase domain
       0.17   11.9   0.1       0.29   11.1   0.1    1.3  1  Flu_C_NS1     Influenza C non-structural protein (NS1)


Domain annotation for each model (and alignments):
>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.3   0.0   5.7e-80   3.4e-76       2     205 ..      14     215 ..      13     216 .. 0.99

  Alignments for each domain:
  == domain 1  score: 255.3 bits;  conditional E-value: 5.7e-80
     UPRTase   2 sshpllkakltilRdastsrkdfrelvdriarllaeealsallpveevtvttplgkeysgelldeekialVpilRaGegmeealrellpearvghlglq 100
                 +++++l +++ti+Rd++tsr+df +++dri+rll+ee l++ lpve++ v t +++  +g+ ++  ki++V+i+RaGe+me++lr++++++r+g++++q
  CCD25625.1  14 PQTNQLLGLFTIIRDKTTSRSDFIFYSDRIIRLLVEEGLNH-LPVEKKSVDTHTNEVFEGVGFKG-KICGVSIVRAGESMEQGLRDCCRSVRIGKILIQ 110
                 6899*************************************.**********************8.********************************* PP

     UPRTase 101 reeetlepveyynkLPkkiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlaeefpkvkvvtaavDeeldekgyivpGlGD 199
                 r+eet+ p++yy+kLP++i++r v+llDp++aTGgsa++a ++L++rgv+ e+I++l++++s+eg+++ ++++p+vk+vt+ +D++l+e++y+vpGlGD
  CCD25625.1 111 RDEETALPKLYYEKLPEDISDRFVFLLDPMLATGGSAIMATDVLIKRGVKPERIFFLNLICSKEGIDNYHSAHPDVKIVTGVIDRGLNEDRYLVPGLGD 209
                 *************************************************************************************************** PP

     UPRTase 200 fGDRlF 205
                 fGDR++
  CCD25625.1 210 FGDRYY 215
                 *****9 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   2.5e-06     0.015      79     116 ..     115     160 ..      43     187 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.5e-06
                   .........EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BS CS
  Pribosyltran  79 s........rlledpagkkVliVDDildtGgTllaalelLkekgpe 116
                   +        +l+ed+ ++ V++ D +l+tGg+ + a++ L ++g++
    CCD25625.1 115 TalpklyyeKLPEDISDRFVFLLDPMLATGGSAIMATDVLIKRGVK 160
                   1555566667999*************************99888887 PP

>> Flu_C_NS1  Influenza C non-structural protein (NS1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   4.8e-05      0.29     108     140 ..      77     109 ..      72     122 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.8e-05
   Flu_C_NS1 108 kkicgyliakqvagietgirkcfrciksgfvma 140
                  kicg  i +    +e g+r c r ++ g ++ 
  CCD25625.1  77 GKICGVSIVRAGESMEQGLRDCCRSVRIGKILI 109
                 59*************************998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       254  (0.014167); expected 358.6 (0.02)
Passed bias filter:                      246  (0.0137208); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1573.05
//
Query:       CCD25626.1  [L=617]
Description: hypothetical protein NDAI_0F03080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.1e-207  690.6   4.2   1.4e-207  690.3   4.2    1.1  1  DUF2009        Protein of unknown function (DUF2009)
    1.8e-06   28.0   3.9    3.7e-06   27.0   3.9    1.5  1  zf-B_box       B-box zinc finger
     0.0014   18.8   2.5     0.0035   17.5   2.5    1.6  1  CEBP_ZZ        Cytoplasmic polyadenylation element-binding pr
  ------ inclusion threshold ------
      0.013   15.7   2.7      0.033   14.4   2.7    1.7  1  IBR            IBR domain, a half RING-finger domain
       0.29   11.2   3.3       0.82    9.7   3.3    1.7  1  zinc_ribbon_6  Zinc-ribbon


Domain annotation for each model (and alignments):
>> DUF2009  Protein of unknown function (DUF2009)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  690.3   4.2  3.9e-211  1.4e-207       2     456 .]     155     613 ..     154     613 .. 0.99

  Alignments for each domain:
  == domain 1  score: 690.3 bits;  conditional E-value: 3.9e-211
     DUF2009   2 akyiplRLteeeRkllrlleaalkvseYtdkvDilsvkskekriveqlkelcsilsglvvasdlkkgqelleekefaenaeflqkvfEigRRyKilnPe 100
                 +++ip+RLt+eeR+ll+lleaal+vseYtd+vDils++sk+kriv+qlke+cs+lsglvvas+lk+gq+lle+k+f++na+++q++fEigRRyKi+nPe
  CCD25626.1 155 SRFIPMRLTSEERHLLKLLEAALQVSEYTDRVDILSYTSKSKRIVAQLKEICSVLSGLVVASNLKVGQKLLEMKNFNDNAKWFQDIFEIGRRYKIMNPE 253
                 799************************************************************************************************ PP

     DUF2009 101 kmreeygkliyllqDsvkpevkealefklvkpiktvesvl.....eekealelledklielataeisaekksreeiqkeikekeeaieklakkysskkl 194
                 +mr++ygkl+y+++Ds+ p+++e++ef+++kpi+t++s+l     ++ ++le+++dk+i + ta+is+ +++r++i+k ik+ke+aie la+kys+k +
  CCD25626.1 254 RMRDTYGKLCYMVMDSRLPQIEEHMEFHFFKPITTIQSFLtsrseDKGKVLEMFNDKMILYGTAHISPVGRARAQISKLIKQKETAIEMLASKYSTKYY 352
                 ****************************************99887788999************************************************ PP

     DUF2009 195 skeeieqvlysiednnafleanrepvekllkllekffepekeeeklslaikaGkdGarlthdHekqyqyvlqsLtlWkeilkemfklWllaeedllsee 293
                 ske+i+qvlysi+d+na++++nr+p++++l++l+ f +pe +++ +sl i++G++G+rlthdH++q++yv+qsLtlW+ i++em++lW++a++dl++ +
  CCD25626.1 353 SKEDIRQVLYSIGDYNAYVNMNRRPIMRMLERLDVFTQPEIASK-YSLGIQYGRNGSRLTHDHQRQWNYVQQSLTLWSIIQREMVRLWYMADSDLFD-G 449
                 ***************************************99885.5***************************************************.9 PP

     DUF2009 294 esYelantgqGlnRvqkapkvskamekilsetqkklgeWvGssvvHlGDrnvPnalvFiDKYtqvprilsPivktleeleklae.dpelkeyieeefgs 391
                 ++Y+la+tg+GlnR++++p+++kam++i+se+++k+++WvGssvvHlGD++vPnal+F+DKYtq+p+il+P+ +tl ++++l++ d+ l eyi++e+gs
  CCD25626.1 450 HQYKLASTGHGLNRIKSCPTIYKAMHEIISECRSKTDSWVGSSVVHLGDDAVPNALFFLDKYTQIPSILIPFDQTLLKINELVAkDEYLLEYINKEYGS 548
                 *********************************************************************************98758999********** PP

     DUF2009 392 veelkktiLsdffrhaFdGsGadnffdaGsCiDGrltsawnwcskiekkkyykiflltgftgFdG 456
                 v++lk tiL+d+f h+FdGsGadnf+++GsCiDGrltsawn+c++i+kkkyy+ifll+ f+gF+G
  CCD25626.1 549 VDDLKLTILQDAFAHMFDGSGADNFYMSGSCIDGRLTSAWNHCNEISKKKYYNIFLLSSFNGFNG 613
                 ****************************************************************9 PP

>> zf-B_box  B-box zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   3.9     1e-09   3.7e-06       4      42 .]      45      88 ..      43      88 .. 0.94

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 1e-09
    zf-B_box  4 tkCpeHknkpatlfCedCqqplCeeCstgeHr.....gHevvpl 42
                  C e+k+ +a++ C+dC++ +C  C + +Hr     +He+v++
  CCD25626.1 45 SLCIECKDMKAEIICNDCEERFCVVCFEMIHRggkrrRHEYVKI 88
                57********************************9977**9986 PP

>> CEBP_ZZ  Cytoplasmic polyadenylation element-binding protein ZZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   2.5   9.8e-07    0.0035      12      58 ..      45      86 ..      41      89 .. 0.86

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 9.8e-07
     CEBP_ZZ 12 seCeiCekakargpyfCrdlaCfkYyCetCwqrrHsaeskeaaHrpl 58
                s C +C+ +k  ++++C+  +C + +C  C+++ H+ +++  +H+++
  CCD25626.1 45 SLCIECKDMK--AEIICN--DCEERFCVVCFEMIHRGGKRR-RHEYV 86
                58******99..*****9..6**************888555.59886 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   2.7   9.3e-06     0.033      33      59 ..      51      77 ..      24      80 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 9.3e-06
         IBR 33 segcksvtCskCgfefCfnCkkewHeg 59
                ++ ++++ C++C+++fC+ C +  H g
  CCD25626.1 51 KDMKAEIICNDCEERFCVVCFEMIHRG 77
                23344588****************985 PP

>> zinc_ribbon_6  Zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.3   0.00023      0.82      19      38 ..      46      65 ..      30      75 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00023
  zinc_ribbon_6 19 mpeeyknkkvkilCnDCekk 38
                   +  e k+ k++i+CnDCe++
     CCD25626.1 46 LCIECKDMKAEIICNDCEER 65
                   34678999*********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       955  (0.0532657); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4176.83
//
Query:       CCD25627.1  [L=103]
Description: hypothetical protein NDAI_0F03090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 727.15
//
Query:       CCD25628.1  [L=623]
Description: hypothetical protein NDAI_0F03100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.22   11.6   4.9       0.59   10.2   4.9    1.7  1  Mit_KHE1        Mitochondrial K+-H+ exchange-related
        9.8    5.9  13.9       0.66    9.7   5.5    2.4  2  SURF6           Surfeit locus protein 6


Domain annotation for each model (and alignments):
>> Mit_KHE1  Mitochondrial K+-H+ exchange-related
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.9   6.5e-05      0.59      23     136 ..     184     299 ..     156     310 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.5e-05
    Mit_KHE1  23 lskssaskaes..kekledkltnkaaktwaklekaeegwkkkivelgeklldripyeElaLksipsksakelesekekkkkekeelksiellyPsslls 119
                 +sk++++k+++  + k ++k  n ++ + ++l+++ ++++++i+++ +k       +E+ Lksi+  +a +++  +ekk  ++ +l+  ++ yPs++++
  CCD25628.1 184 ISKQKSQKISTatAMKQKKKSNNSSSGFLSSLNSKIHNINNNIMNMNSKSQPLPISTEQNLKSIQLINANKSKYLNEKKIFKTYSLQYAKIGYPSDIQK 282
                 334444444332256666777788888888888888889999999988888777789********8888888888888999999*************** PP

    Mit_KHE1 120 eekvleelrklaeeree 136
                 ++k+++e ++l++ r e
  CCD25628.1 283 NKKLTDEDQTLLRFRCE 299
                 ****9999988876654 PP

>> SURF6  Surfeit locus protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   1.2     0.045     4e+02     167     185 ..     188     206 ..     173     292 .. 0.67
   2 ?    9.7   5.5   7.3e-05      0.66      17     104 ..     344     432 ..     340     468 .. 0.46

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.045
       SURF6 167 RkekvekkkaarqkKReeN 185
                 +++k  ++ a++qkK+++N
  CCD25628.1 188 KSQKISTATAMKQKKKSNN 206
                 3344444444444444444 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 7.3e-05
       SURF6  17 kkkeekeeakkeeeekaeekkakeeaeakkskkkkkkkkeaskkee.dlvFskldfedgaekkskkkkkkk.kkkgptkkdpkqaLkkle 104
                 +++++++++++++++ ++ +++ +++++++s++ ++++++++ + + + +F+++ +++ ++++s++++ +     ++++k+ kq  ++l 
  CCD25628.1 344 RRRRRRRRRRRSRSRGRNTSNRGSQQNKSSSSNFDSNSNSNA-NGTlKSKFTNFFIPSLTSSSSSSSNANTiTAISQKNKNDKQNCSQLR 432
                 233333333333333333333333333332333333332222.22258899999884444444444444443222333344444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2117  (0.118077); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4239.40
//
Query:       CCD25629.1  [L=396]
Description: hypothetical protein NDAI_0F03110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
        0.1   13.2   2.4       0.25   12.0   2.1    1.8  2  CtnDOT_TraJ  Homologues of TraJ from Bacteroides conjugative 


Domain annotation for each model (and alignments):
>> CtnDOT_TraJ  Homologues of TraJ from Bacteroides conjugative transposon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.1   1.4e-05      0.25       3      53 ..     223     272 ..     222     282 .. 0.84
   2 ?   -2.6   0.0       0.5     9e+03      20      37 ..     284     301 ..     278     308 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
  CtnDOT_TraJ   3 lIGIvGyFtVPtvAnyivhAgGGgallqkvnslassststalsaakagggm 53 
                  +  I+Gy ++ + A yi + gGGg+ + +  + ++++ ++a++ ++   ++
   CCD25629.1 223 IREILGYLAIAN-AEYILDLGGGGTRMANARNAVAGAMNNATNVSSISNAA 272
                  557999999976.9**********************999999988755554 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.5
  CtnDOT_TraJ  20 vhAgGGgallqkvnslas 37 
                  v+  GG +ll+k  +++ 
   CCD25629.1 284 VDLRGGLSLLEKFHNIVV 301
                  566677777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1236  (0.0689386); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2801.48
//
Query:       CCD25630.1  [L=227]
Description: hypothetical protein NDAI_0F03120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-32  111.3   9.4    1.2e-31  109.9   9.4    1.6  1  Pga1      GPI-Mannosyltransferase II co-activator


Domain annotation for each model (and alignments):
>> Pga1  GPI-Mannosyltransferase II co-activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9   9.4   6.8e-36   1.2e-31       6     171 ..      24     212 ..      20     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 109.9 bits;  conditional E-value: 6.8e-36
        Pga1   6 alvlANTEtfllkvPkdFplienrdeltrevaesnktlisLed.....sniakktyn.tkvkpkktllielndlksdetyqvkicWtAidPisikdldh 98 
                  +v+ANTE++l+ +PkdFp    + +++++ + +  ++i L+d     +n   +++   + k+k++ +iel +l+++ +yq+k+cW+Ai+P+ i++ld+
  CCD25630.1  24 IFVIANTESILISIPKDFPA---TRKKNEDSTINPLPHILLNDtapayTNKLTLDIPvQNHKTKRKYYIELLNLQNNSNYQIKLCWSAIHPLIIDNLDW 119
                 589*****************...555566666778899*****777777777777774456678899******************************** PP

        Pga1  99 lvv............psstlfegtesdearlfvefkvkadsYpl........ledkekvpinvsviklklgipvdLYsiivylillvillvvv 171
                  ++            +++ l++    d+ r+ v+ +++ + +          + +++  +in+svik++lgip+dLY i+ y++++vi++ ++
  CCD25630.1 120 HIIppytvhldspsgNEDPLYHFDPVDYPRIIVSVNIDTHLFLKnlhgrsaaIGKEKLPQINISVIKTFLGIPMDLYPIVTYITMVVIAMSSI 212
                 ***99999998876656677777778899*******999999777677666666667779***************************998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1728.21
//
Query:       CCD25631.1  [L=257]
Description: hypothetical protein NDAI_0F03130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-11   43.8   8.8    3.8e-10   39.8   8.8    2.6  1  INSIG     Insulin-induced protein (INSIG)


Domain annotation for each model (and alignments):
>> INSIG  Insulin-induced protein (INSIG)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   8.8   2.1e-14   3.8e-10       2     153 ..      90     221 ..      89     255 .. 0.82

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 2.1e-14
       INSIG   2 rallLfvlGvvygvlvtrlheerkllvkkeksssswryl..vfwGlagvalGlllpwlDrlweekfaeeeeeeeeekeeekaaseadwalvvrsigafv 98 
                 ++l+L ++G++++ +++ l+e++          + ++yl  + ++l g+ +G ++p+lD+l+ e+                +++  ++++++   +++ 
  CCD25631.1  90 KFLILSTCGIIINEIFNYLNESTLY--------EGFNYLqwIPYSLQGISFGIIIPILDSLLFED---------------IDENGCSFKSIIGTFNIIL 165
                 7899***************777754........3333332256889**************98554...............4556789************ PP

       INSIG  99 GiafAirklpwastlqvsltlalvnpfLWyliDrskpG.fllsaavgllgtavllg 153
                 Gia++ir ++w+s++q+s+++ l+n++LW  +D+   + +ll +  +l+g+++ ++
  CCD25631.1 166 GIAYGIRTISWESKMQMSIAWCLLNFILWLFLDNGTLStILLWISSSLFGITIRYV 221
                 *********************************97765155555669999998433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      542  (0.0302304); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1896.01
//
Query:       CCD25632.1  [L=283]
Description: hypothetical protein NDAI_0F03140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-09   38.3  13.5    2.1e-09   37.4  13.5    1.5  1  zf-AN1    AN1-like Zinc finger


Domain annotation for each model (and alignments):
>> zf-AN1  AN1-like Zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4  13.5   1.2e-13   2.1e-09       1      39 [.      20      56 ..      20      57 .. 0.95

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1.2e-13
      zf-AN1  1 CsfksCkkkdflpfkCryCgkvFClkHrlpedHdCkkla 39
                Cs   C k+dflpf+C++C+k+FC++Hr +++H C++l+
  CCD25632.1 20 CSL--CEKLDFLPFHCSSCNKDFCSEHRSKQSHYCESLK 56
                885..*******************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1204  (0.0671538); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2222.41
//
Query:       CCD25633.1  [L=546]
Description: hypothetical protein NDAI_0F03150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-28   98.9   0.8    1.1e-27   97.1   0.0    2.0  2  Pkinase         Protein kinase domain
    2.1e-14   53.4   0.5    4.9e-14   52.2   0.0    1.7  2  Pkinase_Tyr     Protein tyrosine kinase
    1.5e-09   37.1   0.0    1.5e-09   37.1   0.0    2.3  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   1.8e-31   1.1e-27       1     209 [.      72     289 ..      72     312 .. 0.87
   2 ?   -1.4   1.3       0.2   1.2e+03      16      47 ..     435     465 ..     432     512 .. 0.65

  Alignments for each domain:
  == domain 1  score: 97.1 bits;  conditional E-value: 1.8e-31
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH.HHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladlle.rkgslse 97 
                 y+  +k+GeGsfG+V+++++  +g  vA+K   ++ +  +       E +  k l+  p i + y++ +e  + +lv+++     l+dl    ++ +s 
  CCD25633.1  72 YKIGKKIGEGSFGVVFEGTNMLNGLSVAIKFEPRKTEAPQL----KDEYRTYKILSgTPGIPQAYYFGQEGLHNILVMDLFGPS-LEDLFDwCNRRFSV 165
                 78899*************************98888777754....59********99***********************9854.55555544468*** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE.....EEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHHTTSCBSHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekge.....lKitDFGlakelesssk........ltsfvgtseYlAPEvlkeneyskkvDvWsl 183
                 +++ +ia q+++ +e lH++ +i+rD+Kp+N+Li + g+     + ++DFG+ak+++  ++        ++s  gt +Y++     ++e s+  D+ ++
  CCD25633.1 166 KTVVQIAVQMITLIEDLHAHDLIYRDIKPDNFLIGRPGQpdankVHLIDFGMAKQYRDPKTkqhipyreKKSLSGTARYMSINTHLGREQSRRDDMEAM 264
                 ***********************************977777888*************999999******************999999999********* PP

                 HHHHHHHHHSS-STTTSSHHHHHHHH CS
     Pkinase 184 Gvilyelltgkppfsgekgkekveke 209
                 G +++ +l g+ p++g k  + ++++
  CCD25633.1 265 GHVFFYFLRGQLPWQGLKAPN-NKQK 289
                 ***************765443.2222 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.2
                 EEEEETTTTEEEEEEEEECHCHCHHHHHHHHH CS
     Pkinase  16 ykaveketgkivAvKkikkekakkkkekkvlr 47 
                 y+a++++t++++A  + ++ k+++ ++ ++++
  CCD25633.1 435 YEAYQQQTQQKYAQQQAQQLKKSQAQQ-QAQQ 465
                 566666666666666555554444443.2222 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   8.2e-18   4.9e-14       2     224 ..      73     299 ..      72     308 .. 0.84
   2 ?   -4.3   2.6       1.4   8.6e+03      25      50 ..     446     471 ..     433     488 .. 0.49

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 8.2e-18
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  ++gkk+GeG+fG V+egt       + ++Va+K   +++++ + ++ ++ +ki++    p i + + +  ++ + ++v+++  g +L++      +++
   CCD25633.1  73 KIGKKIGEGSFGVVFEGTNM----LNGLSVAIKFEPRKTEAPQLKDEYRTYKILS--GTPGIPQAYYFGQEGLHNILVMDLF-GPSLEDLFDWC-NRR 162
                  6899**************99....899*******988888886666666666665..5799*********9999******97.46899999988.999 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.....TTEEEE-STTTHEETTTSSEE.....EETTSSTSGGGGS-HHHHHHSEEEHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.....nkvvkisDfGLardiekddey.....vkkeeaklpvkWmapEslkekkftsksD 187
                  +++k+++++a+q+   +e L++++l+ rd+   N L+ +      ++v + DfG+a++  + ++      ++k++     ++m++ +   ++ + + D
   CCD25633.1 163 FSVKTVVQIAVQMITLIEDLHAHDLIYRDIKPDNFLIGRpgqpdANKVHLIDFGMAKQYRDPKTKqhipyREKKSLSGTARYMSINTHLGREQSRRDD 260
                  **************************************98888899***********994333222345488999999******************** PP

                  HHHHHHHHHHHHTTSSGTTTTS...HHHHHHHHHHTTEES CS
  Pkinase_Tyr 188 vWsfGvllwEiftlgespypgl...kneevleklkegkrl 224
                  + + G + +  +  g+ p++gl   +n++ +ek+ e+kr 
   CCD25633.1 261 MEAMGHVFFYFLR-GQLPWQGLkapNNKQKYEKIGEKKRT 299
                  *****99998776.****9999433455566666555554 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 1.4
                  TSSEEEEEEEEESTTSSHHHHHHHHH CS
  Pkinase_Tyr  25 ekkevkVavKtlkeeateeekeelle 50 
                    +++   +K+ ++++++++++++ +
   CCD25633.1 446 YAQQQAQQLKKSQAQQQAQQQQQFQT 471
                  23333333444444444444444443 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   2.6e-13   1.5e-09     281     406 ..      62     270 ..       3     272 .. 0.72
   2 ?   -2.8  11.5      0.34     2e+03     214     271 ..     442     501 ..     384     543 .. 0.51

  Alignments for each domain:
  == domain 1  score: 37.1 bits;  conditional E-value: 2.6e-13
  Pkinase_fungal 281 r........................................................................lenrvhrrlvispvGkpiekae 303
                     r                                                                         ++ +h++lv+  +G ++e+  
      CCD25633.1  62 RddstivglhykigkkigegsfgvvfegtnmlnglsvaikfeprkteapqlkdeyrtykilsgtpgipqayyfGQEGLHNILVMDLFGPSLEDLF 156
                     13345666777777777777777777777777777777777777777778888888888888888888888776677888888888888887642 PP

  Pkinase_fungal 304 .......spkellealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses.....garertGTleFmaievl 386
                            s+k +++   + I+  + L+    ++ rDi  +N li  + + + +k  LiD+ +ak++ d+++++     +++   GT+ +m+i+  
      CCD25633.1 157 dwcnrrfSVKTVVQIAVQMITLIEDLH-AHDLIYRDIKPDNFLIGRPGQPDANKVHLIDFGMAKQYRDPKTKQhipyrEKKSLSGTARYMSINTH 250
                     1222222778889999999********.99***************99********************998888666665599************* PP

  Pkinase_fungal 387 kgeeHsyrhDLESffyvllw 406
                      g e s r+D+E +  v+++
      CCD25633.1 251 LGREQSRRDDMEAMGHVFFY 270
                     ************98888876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.34
  Pkinase_fungal 214 kdddi.aeiRkgldvtka.ekfrskrkvvsssssqelsskaevklkksesskkvekrsvd 271
                     +++++ ++  ++l+ ++a ++ +++++ +++ s++ +++++++++++++ +++ +++  d
      CCD25633.1 442 TQQKYaQQQAQQLKKSQAqQQAQQQQQFQTRPSQHRQQQQHQIQQQQNNINGRYQQQDGD 501
                     222222222233333333222222222222222222333333344333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3991  (0.2226); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                       211  (0.0117686); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.03u 0.33s 00:00:01.36 Elapsed: 00:00:00.48
# Mc/sec: 3390.54
//
Query:       CCD25634.1  [L=129]
Description: hypothetical protein NDAI_0F03160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-23   82.4  13.4    2.4e-23   82.1  13.4    1.1  1  Prefoldin_2  Prefoldin subunit
  ------ inclusion threshold ------
        7.5    6.4  11.6        4.3    7.2   0.5    2.3  2  DivIC        Septum formation initiator


Domain annotation for each model (and alignments):
>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1  13.4   2.6e-27   2.4e-23       1     105 [.      19     123 ..      19     124 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.1 bits;  conditional E-value: 2.6e-27
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--EEEEETTEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2   1 qelinkfqqlqqqlqqlaqqikqletqlkelelvleelelldedtkvyklvGdvlvkqdkeevkeeLeerketlekeiktlekqleklekeleelkee 98 
                  q++in+f++l ++ + l+ ++++ +++++ le+v+ e+ellde++ v++++Gd+++++++ ev e+Le++ e ++k i++le+++++l  +l+elk+ 
   CCD25634.1  19 QQKINEFSKLIMRKDSLELELAKQRQEKEYLEDVSLEIELLDEEELVQYKIGDLFMLMKQSEVVEQLEKDSEIIDKTIDELESKESDLDGRLSELKTA 116
                  9************************************************************************************************* PP

                  HHCCTS- CS
  Prefoldin_2  99 lqkklqq 105
                  l++k+++
   CCD25634.1 117 LYAKFGD 123
                  *****98 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   4.7    0.0065        58      27      59 ..      19      51 ..       4      65 .. 0.81
   2 ?    7.2   0.5   0.00048       4.3      10      51 ..      73     114 ..      67     120 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.0065
                HHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXX CS
       DivIC 27 aalqaelaklkaeneeLeaevkdLksdedyiee 59
                +++ +e  kl  ++++Le e+++ +++++y+e 
  CCD25634.1 19 QQKINEFSKLIMRKDSLELELAKQRQEKEYLED 51
                566678889999999999999999999999986 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.00048
                 XXXXXXXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  10 ifgkkgllaykqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                 +++ k+   + ql+++ + + +++++l  ++ +L+ ++++Lk
  CCD25634.1  73 FMLMKQSEVVEQLEKDSEIIDKTIDELESKESDLDGRLSELK 114
                 555566666777777777777777777777777777777774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1627  (0.0907468); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1014.71
//
Query:       CCD25635.1  [L=350]
Description: hypothetical protein NDAI_0F03170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-96  321.7   0.0    6.4e-96  321.5   0.0    1.0  1  A_deaminase  Adenosine/AMP deaminase


Domain annotation for each model (and alignments):
>> A_deaminase  Adenosine/AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.5   0.0  3.6e-100   6.4e-96       2     328 .]      10     337 ..       9     337 .. 0.98

  Alignments for each domain:
  == domain 1  score: 321.5 bits;  conditional E-value: 3.6e-100
                  S-EEEEEEECCCSS-HHHHHHHHHHHCHT..SS-SCCCCCCCCHCHCCHHHHCCHCCCHHCCCHHHTCCCCCCHHHHHHCCCCCHCTTCCCCCCCCSH CS
  A_deaminase   2 lpKvdlHvHldgclnpktllrlakkkgikeldekvveedeklltlqekfesLkeflydlsvdvlvlhwlievvrllavekakdlakdfvkylevifsP 99 
                  lpK+++H+Hl+g+l+p++l+ la+++ i+ l++++ ++  +l+++++ f++L++fl++++++++vl   +e++++la++++++++k++++++ev+++P
   CCD25635.1  10 LPKCEHHLHLEGTLEPDLLFPLAERNHIT-LPQTFPQTVTELNEKYKSFRDLQDFLDYYYIGTNVLI-KEEDFFDLAWAYFQKVHKQGLVHAEVFYDP 105
                  8**************************99.*************************************.****************************** PP

                  HHHHHH-GCSTCCHHHHCCCCCCCCCCHCCT-EEEEEECCETT..TCCGHCCCHHHHHHCCCCCCCCCCCCC-TTSTTGGG..HHHHHCCCCHTT-EE CS
  A_deaminase 100 lfeatagpqlpelevvlkvvdgfdsvedeskvkerlilvksrk..peewseeinelasyyrdytvvnldllndekiepasl..flklraeagkstlll 193
                  ++++++g   + ++v+l ++++++++++e +++++li++ +r+  pee+ ++++ + +++ d t+++l+l+++e+++p++l  +++  a++ +++l+l
   CCD25635.1 106 QSHTSRG--VTIETVTLGFQRACAKAQSELGISSKLIMCLLRHiePEECLQTVKDAKKFIEDGTISGLGLDSAERPFPPNLfiECYETAKSYNKDLQL 201
                  *******..9***********************************************************************666777778899***** PP

                  EEEESSSS-CHHHHHHHHCS--SCECE-GGGGGSHHHHHHHHHCT-EEEE-HHHHCCCSST-TTTT-CHHHHHHTT-EEEE--BSCCCCT-SHHHHHH CS
  A_deaminase 194 tpHaGEagglehvveAllllkaerigHGvrlrkdpvLqyllalaqiplevcPlSNvalgafleyaenPlkeflerglnvslntDDPlqfgttLieeYa 291
                  t+HaGE+g++++v++Al+ll+++ri+HG+++ +d++L ++la +qi+l+vcPlSNv+l+++++++e Pl+efl++++++sln+DDP++fg ++ ++Y 
   CCD25635.1 202 TAHAGEEGSAQFVADALDLLNVTRIDHGINSIHDAELIQRLASEQIMLTVCPLSNVKLQVVKSVKELPLQEFLDNNVPFSLNSDDPAYFGGYILDNYI 299
                  ************************************************************************************************** PP

                  HHHHHH.T--HHHHHHHHHHHHHCSSS-HHHHHHHCHC CS
  A_deaminase 292 iaaqvf.klseedlaelarNsvkqsflsadekkklldk 328
                  +++++f  +   ++ ++a+N++++s+++ ++k++lldk
   CCD25635.1 300 QVSKDFpDWNYGTWGRIAKNAINGSWCDSKRKHELLDK 337
                  ******9*****************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       377  (0.0210274); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2511.73
//
Query:       CCD25636.1  [L=489]
Description: hypothetical protein NDAI_0F03180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.8e-126  421.4  27.0   3.2e-126  421.2  27.0    1.0  1  Ammonium_transp  Ammonium Transporter Family
  ------ inclusion threshold ------
       0.59   10.2  10.4         21    5.2   0.1    4.7  4  DUF3185          Protein of unknown function (DUF3185)


Domain annotation for each model (and alignments):
>> Ammonium_transp  Ammonium Transporter Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.2  27.0  3.6e-130  3.2e-126       2     399 .]      34     444 ..      33     444 .. 0.98

  Alignments for each domain:
  == domain 1  score: 421.2 bits;  conditional E-value: 3.6e-130
                      HHHHHHHHHHHHHHHHHHHHHHHSSGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSCBSSSSSCE-......TTTTSCCGCCTTCCHHHHHH CS
  Ammonium_transp   2 flllsaalvifmqagfalleaglvrsknvlnilvknlldlavvvllyvlfGyslafgkskgvsgfign......lglsaagvqdetlldglffl 89 
                      +l ++a  v++m++g++ll++gl r+k++l++l+ +l++ av++++++++Gyslaf+++++++gfig+      +++  a ++ ++++d++f++
       CCD25636.1  34 WLGVCAPGVWLMVPGIGLLYSGLARKKHALSLLWASLMASAVCMFQWFFWGYSLAFSHHTKGNGFIGTleffgfRDVLGAPSSVSAVPDIVFAV 127
                      999*****************************************************************9999999999999************* PP

                      HHHHHHHHHHHHHHHHCTTTB-HHHHHHHHHHHHHHTHHHHHHHHHS.SSHHHHTT--.-SSSTTTTHHHHHHHHHHHHHHHS-STTTTG.TTT CS
  Ammonium_transp  90 fqlafaataitivsgavaerikfsayllfsallgtlvyppvahwvwgeggwlaklgvliDfAgstvVHlvggvagLaaalvlgkregrfe.gke 182
                      fq +faa++  ++ g+++er+++ ++++f +l++t+vy+p+a+w+w++ gwlaklg+l D+Ag+++VH+ +g+ gL++al+lgkr++ +  + +
       CCD25636.1 128 FQGMFAAVTGVLMLGGACERARLFPMMVFLFLWMTIVYCPIACWAWNASGWLAKLGAL-DYAGGLAVHISSGHGGLIYALILGKRNDPVAkNGM 220
                      **********************************************************.****************************9998999 PP

                      SS--GSBHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHH.HHHHHHHHHHHHHHHHHHHHHHHCSS.-BHHHHHHHHHHHHHHHTTTTTTS-HH CS
  Ammonium_transp 183 eaikghnlpfavlGtllLwfgWfgFNaGsaltankrararaavtTllAaaagaltallisrlkegk.invlglanGilAGlVAiTaacavvepw 275
                       ++k+h+++ +vlGt++LwfgW  FN Gsa +a+ ra++ + ++T+lAa +g+lt+l+i+++++gk ++++gl++Gi+AGlV+iT+a+++v +w
       CCD25636.1 221 PKYKPHSITSVVLGTVFLWFGWQFFNEGSAGNATIRAWY-SGMSTNLAAGCGGLTWLFIDYFRCGKkWTTVGLCSGIIAGLVGITPAAGFVPIW 313
                      ***************************************.************************666*************************** PP

                      HHHHHHHHHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHHHHHTSHHHC......SSHSSTTGGGT-CHHHHHHHHHHHHHHHHHHH CS
  Ammonium_transp 276 gAliiGlvAgvlsvlgvkklkeklkidDsldvvavHgvgGiwGllavgifaaekvv......askisggllsgegkqlvvqligilvilayafv 363
                      +++iiG+++++ ++++v+ +k+ l+idD ld++a+HgvgG++G++++gifaa++v+      a+ i+gg++++++kq+++ql+g+++++a++++
       CCD25636.1 314 ASVIIGILTAAGCNVAVD-FKSLLRIDDGLDCWALHGVGGVIGSVLTGIFAADYVNasagsyAAPIEGGWINHHWKQVGYQLAGVCAAIAWSTT 406
                      *****************8.************************************9*****99******************************* PP

                      HHHHHHHHHHHHTT..SB--HHHHHHSHHHHHHSSSSB CS
  Ammonium_transp 364 vtlilllllklllg..LrvseeeeevglDvaehgetay 399
                      vt i+ll +++++   Lr+ +eeee+g+D+a++ge++y
       CCD25636.1 407 VTAIILLAMDKIPFlrLRLRPEEEELGTDEAQIGEFTY 444
                      ************99778999***************998 PP

>> DUF3185  Protein of unknown function (DUF3185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1    0.0024        21       4      22 ..      41      59 ..      40      65 .. 0.84
   2 ?   -0.3   0.1      0.12   1.1e+03      30      49 ..     125     144 ..     110     145 .. 0.67
   3 ?    5.1   0.1    0.0025        22       8      23 ..     231     246 ..     227     267 .. 0.78
   4 ?    2.4   0.4     0.017   1.6e+02      41      57 ..     288     304 ..     284     305 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0024
     DUF3185  4 GiiLlvaGivLlvfGynas 22
                G+ L+v Gi Ll+ G+ ++
  CCD25636.1 41 GVWLMVPGIGLLYSGLARK 59
                78899**********9776 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.12
     DUF3185  30 seaftGsttdktlllligGg 49 
                   +f+G +   t +l+ gG+
  CCD25636.1 125 FAVFQGMFAAVTGVLMLGGA 144
                 45666666666666666665 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0025
     DUF3185   8 lvaGivLlvfGynasd 23 
                 +v+G v+l+fG++ ++
  CCD25636.1 231 VVLGTVFLWFGWQFFN 246
                 69**********8653 PP

  == domain 4  score: 2.4 bits;  conditional E-value: 0.017
     DUF3185  41 tlllligGgvaaivGlv 57 
                 t++ l  G++a +vG++
  CCD25636.1 288 TTVGLCSGIIAGLVGIT 304
                 789999*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3654.15
//
Query:       CCD25637.1  [L=361]
Description: hypothetical protein NDAI_0F03190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.011   15.5   0.1       0.14   11.9   0.0    2.5  3  DUF421          Protein of unknown function (DUF421)
      0.015   15.5   0.6       0.26   11.5   0.0    3.0  3  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain


Domain annotation for each model (and alignments):
>> DUF421  Protein of unknown function (DUF421)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.6e-05      0.14       9      50 ..      87     128 ..      83     134 .. 0.95
   2 ?   -2.5   0.0      0.47   4.2e+03      70      81 ..     187     198 ..     148     203 .. 0.52
   3 ?   -0.3   0.0     0.097   8.7e+02      69      89 ..     259     279 ..     242     291 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.6e-05
      DUF421   9 vlienGkldeknlkklrltvddLleqLRqqgifslsdVkyai 50 
                 v+   G++   n  k++ ++ +L  + R+ +i+++ dV +ai
  CCD25637.1  87 VIFTGGQVSITNTSKVHTNTTNLFNSSRALNITQMYDVATAI 128
                 88999***********************************98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.47
      DUF421  70 klplplivdGki 81 
                 + +l++  dGki
  CCD25637.1 187 RGTLVVTKDGKI 198
                 334455555555 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.097
      DUF421  69 tklplplivdGkiqkenLkki 89 
                 t+  +p++ dG++++e ++++
  CCD25637.1 259 TNSIVPIVYDGEYSSELIESV 279
                 367799******999988876 PP

>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.62   5.6e+03      46      72 ..      39      65 ..      31     109 .. 0.56
   2 ?   -1.7   0.0      0.38   3.4e+03      49      64 ..     136     151 ..     119     179 .. 0.78
   3 ?   11.5   0.0   2.9e-05      0.26      15     114 .]     275     360 ..     265     360 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.62
                    HHHHTTT-EEEEEESSSBS-----H.. CS
  Asparaginase_C 46 keakargivvvatsqcpsgsvsnseye 72
                    + + ++g ++ +++  ++ +++ +++ 
      CCD25637.1 39 ASLLQSGLPLPNATNSSYTNTTSNNGT 65
                    555555666655555555555555332 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.38
                     HTTT-EEEEEESSSBS CS
  Asparaginase_C  49 kargivvvatsqcpsg 64 
                     + +g vvva s+ ++g
      CCD25637.1 136 TTTGAVVVANSRSLEG 151
                     4568888888888776 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 2.9e-05
                     HHHHHHHTT--EEEEEEBTTTB--HHHHHHHHHHHTTT-EEEEEESSSBS-----H.....HHHHHTEEE-TT--HHHHHHHHHHHCTT--.-HH CS
  Asparaginase_C  15 vlkallkkgakGvvlegtGvGnlpsallealkeakargivvvatsqcpsgsvsnseyeagkelerlgvisaddmtpeaarikLmlllgkgl.dpa 108
                     ++++ ++ +++G+v+++tG+ n +++          ++i+vv +   +++s+ ++       +   g+i+a+ ++p +a i+L ++ ++g  + +
      CCD25637.1 275 LIES-VSGNIEGLVVATTGSSNSTTSPF--------EDIPVVFAQADSTESFVGE------GDVPKGAIAAGYLSPVQAQILLSIAAANGVtETE 354
                     5553.35688899999988888776544........4789999999999999998......6778899*********************987888 PP

                     HHHHHH CS
  Asparaginase_C 109 evrklf 114
                     +v+ lf
      CCD25637.1 355 DVQSLF 360
                     888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       868  (0.0484132); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2670.46
//
Query:       CCD25638.1  [L=768]
Description: hypothetical protein NDAI_0F03200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-60  204.3   5.9    6.9e-42  143.6   0.1    2.8  3  Pkinase         Protein kinase domain
    5.6e-25   88.1   8.2    1.7e-20   73.4   0.0    2.8  3  Pkinase_Tyr     Protein tyrosine kinase
    0.00058   18.9   7.9     0.0049   15.9   7.9    2.2  1  Haspin_kinase   Haspin like kinase domain
    0.00076   18.9   0.3      0.006   16.0   0.0    2.3  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0025   17.8   0.1       0.71    9.8   0.2    2.7  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.033   13.3   0.1      0.057   12.5   0.1    1.3  1  Seadorna_VP7    Seadornavirus VP7
        0.4    9.4   8.5       0.18   10.5   0.1    2.2  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   1.5       2.6   6.7e+03     221     236 ..     237     254 ..     209     282 .. 0.49
   2 !  143.6   0.1   2.7e-45   6.9e-42       1     153 [.     357     510 ..     357     521 .. 0.96
   3 !   63.3   0.0   8.7e-21   2.2e-17     154     264 .]     576     680 ..     560     680 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.6
                 T..SHH...HHHTTS-HH CS
     Pkinase 221 g..etkeklpeaseisee 236
                 +  +++ ++p++++++++
  CCD25638.1 237 QqqQQQPNIPTQNQMNQT 254
                 111222222222222222 PP

  == domain 2  score: 143.6 bits;  conditional E-value: 2.7e-45
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 +++++ +G+G+fG+V  + +++tgki+A+K++ k+++ kk++  +v +E  +l+ +++p +v ly++f+++++lyl++e+++gg+l+++l r + ++e+
  CCD25638.1 357 FHTVKVIGKGAFGEVRLVQKRDTGKIYAMKTLLKSEMYKKDQlAHVKAERDVLAGSDSPWVVSLYYSFQDTQYLYLIMEFLPGGDLMTMLIRWQLFTED 455
                 67899********************************999999*************************************************9****** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk 153
                  +++++++ + ++e +H+ g+iHrD+Kp+NiLid +g++K++DFGl++ ++++++
  CCD25638.1 456 VTRFYMAECILAIETIHKLGFIHRDIKPDNILIDIRGHIKLSDFGLSTGFHKTHD 510
                 ************************************************9998775 PP

  == domain 3  score: 63.3 bits;  conditional E-value: 8.7e-21
                 BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCS CS
     Pkinase 154 ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkR 252
                 + s vgt++Y+APE+  +++y++++D+WslG i+ye l g ppf +e+ +e+++k+++          e+++++p + +is ea dl+++ll+    +R
  CCD25638.1 576 AYSTVGTPDYIAPEIFLYQGYGQECDWWSLGAIMYECLIGWPPFCSETPQETYRKIMNF---------EQTLQFPDDIHISYEAEDLIRRLLTHA-DQR 664
                 6789*****************************************66665533333333.........557899******************875.678 PP

                 TT....HHHHHTSGGG CS
     Pkinase 253 lt....aeellqhpyl 264
                 l+    a+e+++hp++
  CCD25638.1 665 LGrhggADEIKSHPFF 680
                 877779********98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.2   3.1       6.3   1.6e+04     208     246 ..     244     264 ..     216     273 .. 0.42
   2 !   73.4   0.0   6.5e-24   1.7e-20       3     161 ..     359     515 ..     357     521 .. 0.84
   3 !   19.5   0.1   1.9e-07   0.00048     165     230 ..     579     644 ..     564     663 .. 0.82

  Alignments for each domain:
  == domain 1  score: -5.2 bits;  conditional E-value: 6.3
                  TSHHHHHHHHHHTTEES-BBTTSBHHHH.HHHHHHT-SSG CS
  Pkinase_Tyr 208 glkneevleklkegkrlekpekcpeely.elmkkcweedp 246
                  ++                    ++++++ +lm++  ++++
   CCD25638.1 244 NI-------------------PTQNQMNqTLMQQQQQQQQ 264
                  12...................1122222023333333333 PP

  == domain 2  score: 73.4 bits;  conditional E-value: 6.5e-24
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  + k +G+GafG+V   + +    ++    a+Ktl  +e +++++ +++  e +++   + p +v+l+    +++ l++++e+++gGdL ++L +    
   CCD25638.1 359 TVKVIGKGAFGEVRLVQKR----DTGKIYAMKTLlkSEMYKKDQLAHVKAERDVLAGSDSPWVVSLYYSFQDTQYLYLIMEFLPGGDLMTMLIRW--- 449
                  6789*********999888....555666777774334667777889999*******************************************98... PP

                  TSBHHHHHHH.HHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET..TTSSEEEE CS
  Pkinase_Tyr  99 kltlkdllsf.alqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi..ekddeyvk 161
                  +l ++d+++f +++   ++e +++  ++Hrd+   N+L++ + ++k+sDfGL+     ++d++y+k
   CCD25638.1 450 QLFTEDVTRFyMAECILAIETIHKLGFIHRDIKPDNILIDIRGHIKLSDFGLSTGFhkTHDSNYYK 515
                  66666666651567779************************************9873345566655 PP

  == domain 3  score: 19.5 bits;  conditional E-value: 1.9e-07
                  STSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTTS CS
  Pkinase_Tyr 165 aklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevlekl.kegkrlekpekc 230
                  +     ++apE++ ++ + ++ D Ws G +++E +  g  p+ + +++e+++k+ + ++ l+ p+++
   CCD25638.1 579 TVGTPDYIAPEIFLYQGYGQECDWWSLGAIMYECLI-GWPPFCSETPQETYRKImNFEQTLQFPDDI 644
                  5556789**************************998.********9999999994445556666654 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   7.9   1.9e-06    0.0049     135     265 ..     353     514 ..     121     528 .. 0.57

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.9e-06
  Haspin_kinase 135 vledvtiskelslkelkslklvkgtypglllllqdkvlkek............................pdfyseqqlflvlllkdkGtdLeev.. 200
                     led+++ k++      +++lv+   +g ++ ++  ++ e                               f+++q l+l++++  +G dL ++  
     CCD25638.1 353 SLEDFHTVKVIGKGAFGEVRLVQKRDTGKIYAMKTLLKSEMykkdqlahvkaerdvlagsdspwvvslyYSFQDTQYLYLIMEFLPGG-DLMTMli 447
                    4555555555555555555555544222222222221111133334666666666666666777766545555566666666666555.6666636 PP

  Haspin_kinase 201 klkswkqalsifwqivkiLyvaE.tkfeFEHRdLhldniLvdknlnvtlidlklsRle.ssegkvly 265
                    + + + +    f+    iL++    k+ F HRd++ dniL+d  +++ l d+ ls    + ++  +y
     CCD25638.1 448 RWQLFTEDVTRFYMAECILAIETiHKLGFIHRDIKPDNILIDIRGHIKLSDFGLSTGFhKTHDSNYY 514
                    67777777778998877776533269**************************998644344444455 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.17   4.3e+02      95     134 ..     306     344 ..     284     397 .. 0.72
   2 !   16.0   0.0   2.4e-06     0.006      94     166 ..     432     499 ..     415     511 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.17
         Kdo  95 lterlegaqdLedllakwaelaeelkrallkavgrliakl 134
                  +er e   +Le+ la+ +e++ee+++++l  +g+  +++
  CCD25638.1 306 AIERNERRVELENELAS-HEWSEERRNRQLASLGKKESQF 344
                 46666777777777776.7777777777777777665555 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2.4e-06
         Kdo  94 llterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 l++e l g  dL ++l +w+ + e ++r  + +   +i+ +h++g  H+d+ + nil++ ++    +i l D+
  CCD25638.1 432 LIMEFLPG-GDLMTMLIRWQLFTEDVTRFYMAECILAIETIHKLGFIHRDIKPDNILIDIRG----HIKLSDF 499
                 55665544.699999999*****************************************998....6666555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0059        15      22     111 ..     382     462 ..     359     474 .. 0.68
   2 !    9.8   0.2   0.00028      0.71     165     181 ..     473     489 ..     448     503 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0059
                 -EEEEEE-TT..S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHHCH.-S CS
         APH  22 ryvlrrnppa..raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalhqvdpa 111
                  y+++   ++  + + +++   a+ ++La+++ p  + l+   + ++  +l++++e++pg +l +         +l ++  f  ++ ++ +a
  CCD25638.1 382 IYAMKTLLKSemYKKDQLAHVKAERDVLAGSDSPWVVSLY--YSFQDTQYLYLIMEFLPGGDLMT---------MLIRWQLFTEDVTRFYMA 462
                 5666666666667788888889999999999985433333..3999****************998.........555555555555555555 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00028
                 -EEEE-SS-SGGGEEEC CS
         APH 165 ptvllHgDlhpgNllvd 181
                 + +++H+D++p+N+l+d
  CCD25638.1 473 KLGFIHRDIKPDNILID 489
                 5789************9 PP

>> Seadorna_VP7  Seadornavirus VP7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   2.2e-05     0.057     151     211 ..     465     523 ..     455     525 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.2e-05
  Seadorna_VP7 151 lkdLmdfhsestnllhGDcnpenlmcDknGylklvDPvsLlertvvyvnieYesltqeaev 211
                   + +++++h  + + +h D++p+n++ D  G +kl D +       +    +Y++l q++e 
    CCD25638.1 465 ILAIETIH--KLGFIHRDIKPDNILIDIRGHIKLSDFGLSTGFHKTHDSNYYKKLLQDDEN 523
                   45678888..7899**********************9877777777777999999999986 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   4.7     0.088   2.3e+02     219     282 ..     203     273 ..     172     358 .. 0.68
   2 ?   10.5   0.1   7.1e-05      0.18     313     342 ..     462     520 ..     458     594 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.088
  Pkinase_fungal 219 aeiRkgldvtkaekfrskrkvvsssssqelsskaevklkksesskkvekrsvdssv.stskrsr.........l 282
                     ++i+++ + + +++ +   + + +++ q+ + +++ ++++++ ++ ++++++++++ +++++++         +
      CCD25638.1 203 KSIKNNFQPQLQNQNQ---QYQRQQPIQPIQATQQQQQQQQQQPNIPTQNQMNQTLmQQQQQQQqdstpnymyF 273
                     5566666555553333...3344445555566666666666667777778888887533333333455555551 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 7.1e-05
  Pkinase_fungal 313 rDaIkghrsLflkagiLHrDiSenNilit..............................d 342
                     +++I + +  + k g++HrDi  +Nili                               d
      CCD25638.1 462 AECILAIETIH-KLGFIHRDIKPDNILIDirghiklsdfglstgfhkthdsnyykkllqD 520
                     789********.****************85665555555555555555555555555540 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2518  (0.140443); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.93u 0.34s 00:00:01.27 Elapsed: 00:00:00.51
# Mc/sec: 4523.71
//
Query:       CCD25639.1  [L=106]
Description: hypothetical protein NDAI_0F03210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-36  123.7  11.4    4.7e-36  123.1  11.4    1.3  1  Ribosomal_L44  Ribosomal protein L44


Domain annotation for each model (and alignments):
>> Ribosomal_L44  Ribosomal protein L44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.1  11.4   2.6e-40   4.7e-36       1      76 []      19      94 ..      19      94 .. 0.99

  Alignments for each domain:
  == domain 1  score: 123.1 bits;  conditional E-value: 2.6e-40
                   EEEEEEEEE-------SSSHHHHHHHH.H-SSSGGGGS----.--SSBB--EEEEETTT--EEE----BBS--EEE CS
  Ribosomal_L44  1 kHtehkveqykkgkdselaqgkRrydrkqsgygGqtkpvfkkkaKttKKivlrleCteCkkkrlkalkRakkfelv 76
                   kHt+hkv+qyk+gk+s +aqgkRrydrkqsg+gGqtkp+f+kkaKttKK+vlrleC++Ck+k +++lkR+k+fel+
     CCD25639.1 19 KHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPIFHKKAKTTKKVVLRLECVNCKTKAQLTLKRCKHFELG 94
                   8*************************************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 787.86
//
Query:       CCD25640.1  [L=77]
Description: hypothetical protein NDAI_0F03220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0047   16.5   5.7       0.27   10.9   5.7    2.2  1  zf-tcix          Putative treble-clef, zinc-finger, Zn-bindin
     0.0079   16.5   1.7     0.0096   16.3   1.7    1.2  1  Lar_restr_allev  Restriction alleviation protein Lar
  ------ inclusion threshold ------
      0.015   15.3   2.2      0.053   13.5   2.2    1.9  1  DNA_ligase_ZBD   NAD-dependent DNA ligase C4 zinc finger doma
      0.067   13.4   3.9       0.43   10.8   0.4    2.1  2  IBR              IBR domain, a half RING-finger domain
       0.49   10.5   7.8       0.18   11.9   2.0    2.2  2  TRAF6_Z2         TNF receptor-associated factor 6 zinc finger
       0.61   10.1   3.5         20    5.3   3.5    2.2  1  Ogr_Delta        Ogr/Delta-like zinc finger


Domain annotation for each model (and alignments):
>> zf-tcix  Putative treble-clef, zinc-finger, Zn-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   5.7   9.2e-05      0.27      10      40 ..      16      53 ..      13      55 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 9.2e-05
     zf-tcix 10 vrkCpkCGty.......NGtRglsCkNkaCdqvfkkkd 40
                v+ Cp+CGt           +  +C N +C + f++++
  CCD25640.1 16 VKDCPECGTAlqkcliqQNYAFVMCPNDKCAYPFNQRE 53
                9*******962221111233456799999999999875 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.7   3.2e-06    0.0096       1      45 [.      14      53 ..      14      65 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 3.2e-06
  Lar_restr_allev  1 eeLkpCPfCggravlersqrvvaeigqcvyCad..Cgastpwfkiae 45
                     +++k+CP Cg +  ++  q+++a    +v+C +  C +    f+ +e
       CCD25640.1 14 KQVKDCPECGTALQKCLIQQNYA----FVMCPNdkCAY---PFNQRE 53
                     689********************....****7778*99...444444 PP

>> DNA_ligase_ZBD  NAD-dependent DNA ligase C4 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.2   1.8e-05     0.053       2      25 ..      19      45 ..      18      46 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.8e-05
  DNA_ligase_ZBD  2 CPvCGsavvR...eegeaiyRCtnlsC 25
                    CP+CG+a+ +    ++ a   C+n +C
      CCD25640.1 19 CPECGTALQKcliQQNYAFVMCPNDKC 45
                    ********9865445888899999999 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.5     0.011        34      16      31 ..      14      27 ..       4      30 .. 0.71
   2 ?   10.8   0.4   0.00014      0.43      11      35 ..      30      54 ..      25      66 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.011
         IBR 16 pnlkwCprpdCeaiie 31
                +++k Cp  +C+++++
  CCD25640.1 14 KQVKDCP--ECGTALQ 27
                4577888..8887765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00014
         IBR 11 slesdpnlkwCprpdCeaiiekseg 35
                 ++++  ++ Cp+ +C +++ + e+
  CCD25640.1 30 LIQQNYAFVMCPNDKCAYPFNQREN 54
                4677888***********9987776 PP

>> TRAF6_Z2  TNF receptor-associated factor 6 zinc finger 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.0   6.2e-05      0.18       5      19 ..      18      32 ..      16      34 .. 0.90
   2 ?    2.2   0.4     0.068     2e+02       1      13 [.      35      49 ..      35      57 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.2e-05
    TRAF6_Z2  5 eCPQCQraFQKnqlk 19
                +CP C  a QK+ ++
  CCD25640.1 18 DCPECGTALQKCLIQ 32
                7***********886 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.068
    TRAF6_Z2  1 FalVeCP..QCQraF 13
                +a V CP   C  +F
  CCD25640.1 35 YAFVMCPndKCAYPF 49
                58899*944477777 PP

>> Ogr_Delta  Ogr/Delta-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   3.5    0.0065        20       2      43 ..      19      55 ..      18      59 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0065
   Ogr_Delta  2 CPhCgapaaartsrnlskdvreryyqCsnfeCgatfvaaeei 43
                CP+Cg++         + +   ++  C n+ C + f   e i
  CCD25640.1 19 CPECGTALQ-----KCLIQQNYAFVMCPNDKCAYPFNQRENI 55
                888887754.....3444444456777777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       743  (0.0414412); expected 358.6 (0.02)
Passed bias filter:                      478  (0.0266607); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 548.01
//
Query:       CCD25641.1  [L=1125]
Description: hypothetical protein NDAI_0F03230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.1e-58  196.1   0.0    7.4e-58  195.3   0.0    1.4  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    4.3e-14   52.3   0.4    1.4e-13   50.7   0.0    2.1  2  EFG_C        Elongation factor G C-terminus
    1.1e-09   38.6   0.1    4.4e-09   36.6   0.0    2.1  2  GTP_EFTU_D2  Elongation factor Tu domain 2
    9.6e-09   35.2   0.0      3e-08   33.6   0.0    1.8  1  EFG_II       Elongation Factor G, domain II
    3.2e-05   23.7   0.0    0.00019   21.2   0.0    2.2  2  EFG_IV       Elongation factor G, domain IV
  ------ inclusion threshold ------
      0.011   15.8   0.0      0.034   14.2   0.0    1.9  1  MMR_HSR1     50S ribosome-binding GTPase
      0.095   12.7   6.5       0.18   11.8   6.5    1.3  1  Trypan_PARP  Procyclic acidic repetitive protein (PARP)


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.3   0.0   2.9e-61   7.4e-58       2     183 ..      18     266 ..      17     367 .. 0.81

  Alignments for each domain:
  == domain 1  score: 195.3 bits;  conditional E-value: 2.9e-61
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEE...........T.TCSSEEEEEEEESSSGGGHHHHH CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisle...........k.etkkylinliDtPGHvdFskevi 88 
                  irn++i++hvDhGKt+L+d+Ll+++g+is+  + a++ r+lD +++E+ rgiT++s+aisl+           +   +++l+nliD+PGH+dFs+ev+
  CCD25641.1  18 CIRNVCIVAHVDHGKTSLSDSLLASNGIISQ--RLAGKIRFLDARPDEQLRGITMESSAISLYfrvlhkqdgkdEpLVNEHLVNLIDSPGHIDFSSEVS 114
                 59*****************************..7778899*******************************987469********************** PP

                 HHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHHHHHH.................................. CS
    GTP_EFTU  89 rglrvlDgavlvvdaveGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqklsrk.................................. 153
                 ++ r +Dga+++vd+veGv++qt +vlr++++e++++i+++NK+Drl+ el+ +++e++ ++++                                   
  CCD25641.1 115 TASRLCDGAIVLVDVVEGVCSQTITVLRQCWTENLKPILVLNKIDRLIMELQLTPQEAYIHMNKIieqvnsvlgsffagerqfedeewreqlelnknak 213
                 ***********************************************************999777999***********99999888877777655555 PP

                 ..HHHHHHHHHTTT.........TTEEEEEEBTTTTBTHH......................H CS
    GTP_EFTU 154 ..eeklekygekge.........kevpvvfgSalkgegvk......................t 183
                   e          +          + +v+f+Sa++g+g++                       
  CCD25641.1 214 fvE----------KddsniyfnpMDNNVIFASAIDGWGFNigqlvkfyeqklgakrenlqkvL 266
                 552..........03345555556789**********99866555555555555555555550 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   5.5e-17   1.4e-13       5      82 ..     989    1067 ..     985    1071 .. 0.93
   2 ?   -3.1   0.1       3.2   8.2e+03      20      38 ..    1095    1113 ..    1090    1121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 5.5e-17
                  EEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE..TTEEEEEEEEEGGG-TTHHHCHHHCTTTS-EEEEEEEEEEE-- CS
       EFG_C    5 PivkveievpeeyvgkvisdlssrrGeiedmeqd.asgrviieaeiPlaeligfateLrslTkGegsfsmefsgYeevp 82  
                   +++++i+++ e++gkv+  +++r+G+i + e + ++ ++ i+a+iP+ e +g+++++r+ T+G ++ ++ f+g+e ++
  CCD25641.1  989 AMYTCDIQTSVEVLGKVYAVIQQRHGKIVSEEMKeGTPFFQIRAHIPVIEAFGLSEDIRKRTSGSAQPQLVFNGFECID 1067
                  689**************************999998899************************************99766 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.2
                  CHHHHHHHCT-EEEEEEEE CS
       EFG_C   20 kvisdlssrrGeiedmeqd 38  
                  k ++ + +r+G +++ + +
  CCD25641.1 1095 KHMNAIRRRKGLFIEEKVI 1113
                  6689999****99998876 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.1   5.4e+03      21      41 ..     460     480 ..     456     490 .. 0.73
   2 !   36.6   0.0   1.7e-12   4.4e-09       3      64 ..     602     668 ..     601     694 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.1
                  EECTCTTSEEEEEEEEEEEEE CS
  GTP_EFTU_D2  21 ilgndtskkeivtrissletf 41 
                  ++ +++s+ke+ +++  l+t 
   CCD25641.1 460 NMNVTDSQKEQSEEVDNLYTR 480
                  566455688899999999986 PP

  == domain 2  score: 36.6 bits;  conditional E-value: 1.7e-12
                  EEEEEEEESEEETTEEEEEEC.TCTTSEE....EEEEEEEEEEETEEESEEETTSEEEEEEEESSCC CS
  GTP_EFTU_D2   3 valgrvysGtlkkGdevrilg.ndtskke....ivtrissletfhededeavaganaGvivaikgle 64 
                  +a++r+ysG lk G+e+ +lg ++ +k +    ++ +i+ l+ f+++e  + + ++ G+iv+i gl 
   CCD25641.1 602 IAFARIYSGSLKIGQEISVLGpKYNPKHPnehiQKATITNLYLFMGKELLPLDVCPSGNIVGIGGLA 668
                  79***********************9999**********************************9986 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.2e-11     3e-08       3      67 ..     695     758 ..     694     765 .. 0.94

  Alignments for each domain:
  == domain 1  score: 33.6 bits;  conditional E-value: 1.2e-11
      EFG_II   3 ePvislaiepkskadedklskaLarlleEDptlrverdeeTketilsGmGelHleivverlkrey 67 
                 +P++ +a+ep++  + +kl++ L+ l   Dp +++ + ++T+e il+  GelHle  ++ lk+++
  CCD25641.1 695 TPIVRVAVEPANPVEMNKLARGLKLLNLADPCIETYM-TDTGEHILCTAGELHLERCLKDLKERF 758
                 699*******************************876.79**********************998 PP

>> EFG_IV  Elongation factor G, domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0         1   2.7e+03      72      95 ..     671     694 ..     669     705 .. 0.77
   2 !   21.2   0.0   7.4e-08   0.00019      22      95 ..     862     942 ..     848     951 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1
                 CTTS-TTTS--EESEEEEEEEEE- CS
      EFG_IV  72 alkeGplagepvtdvkvtLldgsl 95 
                 +lk+G l  e v++++   +d  +
  CCD25641.1 671 VLKNGTLVAEGVQGINLAAVDFHT 694
                 789***********9876666554 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 7.4e-08
                 CHTSSSHCCCCCEEEECCTTTTSSEEEEE--S........TCCCHCCCCHHHHCCCCCCTTS-TTTS--EESEEEEEEEEE- CS
      EFG_IV  22 kqsggdgqyakvileiePleegsgnefvdetk........ggqvpkeyieavekGfqealkeGplagepvtdvkvtLldgsl 95 
                 k++g  g+y k+i +++P   ++ n++v+e +        ++    e+ +++ +Gfq  ++eGpla+epv+++ v + d+ +
  CCD25641.1 862 KNKGLYGDYLKKIAALGPHR-TGCNILVSENElldslfdsTIHGKFEFTDSILNGFQLSVNEGPLANEPVQGMCVIIEDIHI 942
                 67888999999999999975.555555555554455556566667799****************************999866 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   1.3e-05     0.034       2     114 .]      22     157 ..      21     157 .. 0.64

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
                 EEEEESTTSSHHHHHHHHHTSTEEESSST.TSSSSEEEEEEEETTEE.................................EEEEECGGCSSHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkp.gtTrdinegrvklkgke.................................ielvDtpGliegaseekgl 66 
                 v+iv +   GK++L  +l+ ++ i+s++  g+ r    +  +    +                                 ++l+D pG i+       +
  CCD25641.1  22 VCIVAHVDHGKTSLSDSLLASNGIISQRLaGKIRFLDARPDE----QlrgitmessaislyfrvlhkqdgkdeplvnehlVNLIDSPGHID-------F 109
                 788999999999999999987655544431444444443222....1122334445555555556666667777777777********776.......6 PP

                 HHHHHHHHC.TSEEEEEEETTTTCSHHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  67 gkaflalee.adlillvvdaseeklkpldeeleelleeakkplilvlnk 114
                 + ++    + +d ++++vd+ e+  ++    l ++ +e+ kp ilvlnk
  CCD25641.1 110 SSEVSTASRlCDGAIVLVDVVEGVCSQTITVLRQCWTENLKP-ILVLNK 157
                 66666666669********98554555555666666656666.888887 PP

>> Trypan_PARP  Procyclic acidic repetitive protein (PARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   6.5   6.9e-05      0.18      43     114 ..     468     541 ..     446     546 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 6.9e-05
  Trypan_PARP  43 kekgtkvsdddtngtd..pepepepepepepepepepepetepeeepepepepepepepepepepepepepgaa 114
                  ke+  +v++  t + d  + pe epe +p+   ++ep ++t  +++ +  +ep pe + + e e +pe +p +a
   CCD25641.1 468 KEQSEEVDNLYTRAQDtvVTPEVEPEVKPKKRFNSEPMKNTTENDSFQIVTEPAPEFDLGFEYEEDPEEDPDTA 541
                  345666666666655511556666666666666788888888888889999*****************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 7750.86
//
Query:       CCD25642.1  [L=368]
Description: hypothetical protein NDAI_0F03240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1254  (0.0699426); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2747.61
//
Query:       CCD25643.1  [L=416]
Description: hypothetical protein NDAI_0F03250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       661  (0.0368676); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 3113.49
//
Query:       CCD25644.1  [L=665]
Description: hypothetical protein NDAI_0F03260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2536  (0.141447); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        35  (0.00195214); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.37u 0.35s 00:00:01.72 Elapsed: 00:00:00.55
# Mc/sec: 3619.07
//
Query:       CCD25645.1  [L=637]
Description: hypothetical protein NDAI_0F03270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-07   30.7   2.7    2.5e-07   30.7   2.7    2.4  2  bZIP_1    bZIP transcription factor
    1.8e-06   28.2   0.8    1.8e-06   28.2   0.8    3.6  3  Aft1_OSA  Aft1 osmotic stress response (OSM) domain
     0.0013   19.1   6.1     0.0013   19.1   6.1    3.6  3  Aft1_HRA  Aft1 HRA domain
  ------ inclusion threshold ------
      0.014   15.5   4.6      0.014   15.5   4.6    2.4  2  bZIP_2    Basic region leucine zipper
        2.3    8.5  16.8        0.4   11.0   8.9    2.4  2  OmpH      Outer membrane protein (OmpH-like)
        6.3    6.1  18.1         13    5.0  18.1    1.5  1  DUF4407   Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.9         1     3e+03      12      26 ..     398     412 ..     393     438 .. 0.78
   2 !   30.7   2.7   8.4e-11   2.5e-07       2      46 ..     455     499 ..     453     504 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1
                 -HHHHHHHHHHHHHH CS
      bZIP_1  12 kNReaArrsRqRKqa 26 
                 +N  aA + R++K  
  CCD25645.1 398 QNGPAAPKKRRKKST 412
                 677788888888865 PP

  == domain 2  score: 30.7 bits;  conditional E-value: 8.4e-11
                 XXXXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelKrekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLk 46 
                 +e Kr+  +++NR+aA+++RqRK+++i++ e     + +e +++ 
  CCD25645.1 455 QERKRKEFLERNRVAASKFRQRKKEYIKKIEGDLNYFHNEYEDYN 499
                 577888889**********************99999999988776 PP

>> Aft1_OSA  Aft1 osmotic stress response (OSM) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.8   6.2e-10   1.8e-06      33      53 ..      13      33 ..       5      36 .. 0.81
   2 ?   -2.7   1.5       2.8   8.5e+03      10      25 ..     334     347 ..     313     354 .. 0.58
   3 ?   -3.5   1.8         5   1.5e+04       8      21 ..     401     414 ..     394     442 .. 0.56

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 6.2e-10
    Aft1_OSA 33 ntgslslEPNPFEqSFgggsd 53
                ++ s++lEPNPFEqSFg++ d
  CCD25645.1 13 GVSSFDLEPNPFEQSFGSTTD 33
                4567************88774 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.8
    Aft1_OSA  10 apPpRpaqqqqsdntp 25 
                  p +R+ qq+++  t+
  CCD25645.1 334 LPQQRQRQQNPK--TS 347
                 344455544443..34 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5
    Aft1_OSA   8 plapPpRpaqqqqs 21 
                 p ap +R ++++++
  CCD25645.1 401 PAAPKKRRKKSTTA 414
                 55555555533322 PP

>> Aft1_HRA  Aft1 HRA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1       1.1   3.2e+03      56      68 ..     135     146 ..     103     161 .. 0.77
   2 !   19.1   6.1   4.2e-07    0.0013      34      72 ..     228     274 ..     146     281 .. 0.77
   3 ?   -1.3   0.3      0.93   2.8e+03      31      31 ..     323     323 ..     285     396 .. 0.57

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 1.1
    Aft1_HRA  56 tglTPggggssfP 68 
                  +lTPgg+   +P
  CCD25645.1 135 PLLTPGGSRR-LP 146
                 4799997544.33 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 4.2e-07
    Aft1_HRA  34 teesfesesfrtGfTPgtsslrtglTPg..........gggssfPapSp 72 
                 ++  f  +  +tG+TP++ss+r+glTPg           + s+ P+pS+
  CCD25645.1 228 SSIIF--NLPKTGLTPNESSIRSGLTPGllsqnyypilPSISQSPIPSS 274
                 34445..6679*****************977666666645556666665 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 0.93
    Aft1_HRA  31 q 31 
                 q
  CCD25645.1 323 Q 323
                 1 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.6         1     3e+03      26      38 ..     421     433 ..     404     438 .. 0.58
   2 ?   15.5   4.6   4.6e-06     0.014      10      36 ..     464     490 ..     451     496 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1
                 HHHHHHHHHHHHH CS
      bZIP_2  26 keeeleervkeLe 38 
                 ke+el+++ ++ +
  CCD25645.1 421 KEQELQQQHQQQQ 433
                 4455555544444 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.6e-06
                 XXXXXXXXX-HHHHHHHHHHHHHHHHH CS
      bZIP_2  10 rkNreAarrsRekkkakeeeleervke 36 
                 ++Nr Aa ++R++kk++ +++e  +++
  CCD25645.1 464 ERNRVAASKFRQRKKEYIKKIEGDLNY 490
                 39******************9988876 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.9     0.097   2.9e+02      65      91 ..     315     342 ..     300     353 .. 0.62
   2 ?   11.0   8.9   0.00013       0.4      19     108 ..     402     498 ..     394     519 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.097
                 HHHHHHHHHHHHHHHH...HHHHHHHHHHH CS
        OmpH  65 lqkkeqelqqkqqqka...qelqkkqqell 91 
                 l+++e++ qq  qq++   q l +++q  +
  CCD25645.1 315 LNTQENASQQ-HQQQQphlQ-LPQQRQRQQ 342
                 5667777777.444443632.333333222 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS........-HHHHHH.HHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  19 aaqeqlekkfkklqaeleakekelqklqeelqkkakkle.......keekeqe.lqkkeqelqqkqqqka.qelqkkqqellkpildkinkaikevake 108
                 aa ++  kk+++  +   +ke+elq++ ++ q+ +++ +       +++  +e  ++k++e+ + +++ a  +++++++e +k+i   +n + +e+   
  CCD25645.1 402 AAPKKRRKKSTTASTNAVKKEQELQQQHQQQQDTNEN-TtgntntdSQTYDEEdQERKRKEFLE-RNRVAaSKFRQRKKEYIKKIEGDLNYFHNEYEDY 498
                 5677888999999999999******999999966666.24698886333333369999999999.555556***********99998888777766555 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  18.1    0.0044        13     102     249 ..     305     468 ..     301     481 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0044
     DUF4407 102 kiFekeIdaelaeeqqeeakelkeqlaaaltaelaeleaqia..............alqaeidaaearldalraeaqkeldgtk.gtgttgvaGkgpaa 185
                 + F++ I   l+++ +++++++++q   +l ++ ++ ++  +                 ++++a++a  ++  ++ +  ++g   +++ + ++ +gpaa
  CCD25645.1 305 LGFSNVISPPLNTQENASQQHQQQQPHLQLPQQRQRQQNPKTssyietgapmtmidPRTTTLSAKNAVNQNHDDDNNTITTGSItKNKNSSTNQNGPAA 403
                 567888888888888888888888877777666666666666799999999997754444444444444444444444444444856666688899999 PP

     DUF4407 186 kekk.aqldaaqaelaelkakldatarlaalraelaeleaerakeraasqaaaaaddGllarlea 249
                  +k+ ++ ++a+++  + +++l+++++++++ +e ++ ++++++++ + ++++++ + +l+r++ 
  CCD25645.1 404 PKKRrKKSTTASTNAVKKEQELQQQHQQQQDTNENTTGNTNTDSQTYDEEDQERKRKEFLERNRV 468
                 764404555666666666777789999999999999999***********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2840  (0.158403); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        41  (0.0022868); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.15u 0.34s 00:00:01.49 Elapsed: 00:00:00.54
# Mc/sec: 3581.68
//
Query:       CCD25646.1  [L=357]
Description: hypothetical protein NDAI_0F03280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.3e-45  154.9   0.0    3.1e-45  154.5   0.0    1.1  1  FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family


Domain annotation for each model (and alignments):
>> FAA_hydrolase  Fumarylacetoacetate (FAA) hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.5   0.0   1.7e-49   3.1e-45       1     207 [.     106     331 ..     106     344 .. 0.90

  Alignments for each domain:
  == domain 1  score: 154.5 bits;  conditional E-value: 1.7e-49
                    .EEEEEEE--SHHHHHTTT.-SS-EEEEEEGGGE.EETTE..EE-TT..........................SSSS-EE......EEEEEEEESS CS
  FAA_hydrolase   1 kivcdglnyaehvreagkaaeeppdrhiplepvfflkrasslvgpgd..........................pirrPagsekldyEvELavvigk 70 
                    ki+c+g+nya+h++e++    + p+     +p fflk++ss+++p +                          +i +P+g + +++EvELa+++ k
     CCD25646.1 106 KIICIGRNYAAHIAELN---SKTPK-----QPFFFLKPSSSIITPITqahprrddlptgacfhglredggnpsCIYLPKG-TDVHHEVELALIMDK 192
                    69*************96...33444.....666***************************************99******.67************* PP

                    -B--T....--HHHHHTTEEEEEEEEEEE-SBGGG---..HHHHHHTGGGEEEEEE-B--B-.STT--.....-SS-EEEEEETTEEEEEEEGGGT CS
  FAA_hydrolase  71 plrev....lsveeAedaiaGytllnDvsaRdlqaeek.aplgwflgksfdtftpiGpwivtpdeled.....pedlelrlrvngeevqdsntkdm 156
                     ++++    +++ ++ d+i+G++l  D++aR++q+e+k + l+w  +k+fdtf p++ +i ++del++     ++ ++l + vnge++q++  + m
     CCD25646.1 193 YVSNAqvgdINAGNVFDLIRGVALSFDLTARNIQFEAKdKGLPWSIAKGFDTFLPMSHFI-PKDELSKdkdnlQDVFKLVCKVNGEVRQNEWSSLM 287
                    666665667799**************************8889******************.******9555544489******************* PP

                    TTSHHHHHHHHHHHH-B-TT-EEEEEES.......S--EE--TT-EEEEEE CS
  FAA_hydrolase 157 ifspaeliahlsagltLepGdliltGTpsgvgaeeeslkflkdgDevevei 207
                    + + +++i+ +s ++tLepGd+iltGTpsgvg+       +++gDe++ e+
     CCD25646.1 288 LNPLEKIIQVISTTMTLEPGDIILTGTPSGVGQ-------IQPGDEISGEL 331
                    ******************************994.......9*****98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2553.20
//
Query:       CCD25647.1  [L=530]
Description: hypothetical protein NDAI_0F03290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-70  235.8   0.0      6e-70  234.9   0.0    1.5  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase
  ------ inclusion threshold ------
       0.27   11.2   3.1       0.71    9.8   3.1    1.8  1  Rota_NS26       Rotavirus NS26


Domain annotation for each model (and alignments):
>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.9   0.0   6.7e-74     6e-70       1     199 [.     203     527 ..     203     528 .. 0.97

  Alignments for each domain:
  == domain 1  score: 234.9 bits;  conditional E-value: 6.7e-74
  PS_Dcarbxylase   1 lneffvrklkdgaRpidddpgaivsPaDgrilqigeiee..gsviqvKgityslrdLlgeasess.............................. 63 
                     l eff+r++k+++Rpi+++ + iv+P+Dgr+lqig i++  g+++qvKg tys+r++lg +s+                                
      CCD25647.1 203 LSEFFYRNIKPEVRPIETGGNVIVCPSDGRVLQIGIIDSdtGEIEQVKGLTYSIREFLGTHSNPLmsksestldltaeetkhkefakindfklaq 297
                     579*********************************999889*****************99886699**************************** PP

  PS_Dcarbxylase  64 ..............................................................adsfk.ngyfvviyLspgdyHryhaPvsgkvee 95 
                                                                                    d+++ ++yf+viyL+pgdyH++h+P++++++ 
      CCD25647.1 298 gkyedgceyinienegdksvkefnsgpsktvkllselsltypsyrfnsltksssslsasstiTDPVDtELYFAVIYLAPGDYHHFHSPIDWVCKI 392
                     **************************************************9999999888875555469************************** PP

  PS_Dcarbxylase  96 rrhipGellsvnpsalkelrglftlneRvvlview.kGkvavvpvGatnvgsivln..............................vlkgdelkk 159
                     rrh+pG+l+sv+p+++++ ++lf+lneRv l+++w +G+++++pvGatnvgsi+ln                              vl+g++l k
      CCD25647.1 393 RRHFPGDLFSVAPYFQRNFPNLFVLNERVSLLGYWkYGFFSMTPVGATNVGSIKLNfdkelitnvkrnklkdphicyeaiyenaskVLGGMPLIK 487
                     **********************************879*************************************************99******* PP

  PS_Dcarbxylase 160 GeelGyFqfGStvvlvfeagkfieslvekgqkvkmGeklg 199
                     Gee+G+F++GStvvl+fea+k++++++++g+kvkmG+klg
      CCD25647.1 488 GEEMGGFELGSTVVLCFEAPKTFKFNMKVGEKVKMGQKLG 527
                     ********************9*****************98 PP

>> Rota_NS26  Rotavirus NS26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.1   7.9e-05      0.71      40      84 ..      40      86 ..      11     158 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 7.9e-05
   Rota_NS26 40 deeelstYllskadvtqsDsa..snDlavkfsikseavvcdesagvs 84
                 + +ls+ + +k  +t  Ds+  sn+  vk++ k+ a v+d + +vs
  CCD25647.1 40 WNRKLSNKFSNKFFLTSKDSSerSNEFVVKHANKAAATVSDHQKHVS 86
                5678999999**999999996669**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3796.79
//
Query:       CCD25648.1  [L=1732]
Description: hypothetical protein NDAI_0F03300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-07   32.2   3.7    1.3e-07   32.2   3.7    3.4  2  ANAPC1    Anaphase-promoting complex subunit 1
  ------ inclusion threshold ------
      0.013   15.9   7.0       0.97   10.0   1.0    4.5  4  PC_rep    Proteasome/cyclosome repeat


Domain annotation for each model (and alignments):
>> ANAPC1  Anaphase-promoting complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   3.7   1.5e-11   1.3e-07       1     112 [.      58     260 ..      58     341 .. 0.69
   2 ?   -2.1   0.3       0.6   5.4e+03      67     102 ..     794     828 ..     773     859 .. 0.58

  Alignments for each domain:
  == domain 1  score: 32.2 bits;  conditional E-value: 1.5e-11
      ANAPC1   1 aLvVllkdqahiyfls.GeshtvpLpFevasvfplpkGlllqRkpeed................................................... 47 
                 +Lv++l+d ah+y+ls G s +v+ p++++ +f +p G++l+R+  +d                                                   
  CCD25648.1  58 CLVIVLSDVAHVYYLStGGSTSVSFPYTISNAFFYPYGIVLERNDTKDdagpfnttdvqfkfitltdpmapfgtlsfatkqsmdgiynmtmvvfprean 156
                 79*******************************************977588888888877777777777777777777777777777777777777777 PP

      ANAPC1  48 .....................................................qapprslrnpsappnsfldssspll.........tsssqtssqktt 84 
                                                                      +                                    ++t+s +++
  CCD25648.1 157 dkitafydqrensvhfyytrilntnssagqthskkdtihssaysnmgcnnlnlD-----------------------EnnrnlrkvsILNRRTASINSN 232
                 777777777776666666666666655555555544333332222222222221.......................0111223422112333344444 PP

      ANAPC1  85 fstesrgspkrlsltlsstleskkdssl 112
                 ++ ++ +s++  s+tl st   +k+s+l
  CCD25648.1 233 YDINNNNSSRNSSSTLRSTNVITKNSDL 260
                 4444555555555555555333444444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.6
      ANAPC1  67 sssplltsssqtssqkttfstesrgspkrlsltlss 102
                 s+s++  +    + +++t++t+sr+ p+  ++  s+
  CCD25648.1 794 SPSSFS-NLTSFKVRNSTIHTNSRRMPRNIYTVISE 828
                 222221.22222223335555566666665554444 PP

>> PC_rep  Proteasome/cyclosome repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.017   1.5e+02       2      27 ..    1090    1115 ..    1089    1119 .. 0.91
   2 ?   10.0   1.0   0.00011      0.97       1      16 [.    1133    1148 ..    1133    1152 .. 0.93
   3 ?    2.7   0.0     0.022     2e+02       4      29 ..    1297    1322 ..    1296    1325 .. 0.89
   4 ?   -2.1   0.2      0.76   6.8e+03       4      14 ..    1478    1488 ..    1478    1488 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.017
                  HHHHHHHHCTTSTCHHHHHHHHHHHH CS
      PC_rep    2 AllALGlihaGsgneeaislLkpyls 27  
                  Al ++Gl++  s+  +  slL+++l+
  CCD25648.1 1090 ALVGIGLLYQQSNHRRMSSLLLSQLT 1115
                  789******************99987 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00011
                  HHHHHHHHHCTTSTCH CS
      PC_rep    1 GAllALGlihaGsgne 16  
                  GA +ALGli++Gsg +
  CCD25648.1 1133 GAGIALGLINLGSGKN 1148
                  89***********987 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.022
                  HHHHHHCTTSTCHHHHHHHHHHHHHH CS
      PC_rep    4 lALGlihaGsgneeaislLkpylsdt 29  
                  lA+G+ +a + n  ++++L+++l+ +
  CCD25648.1 1297 LAMGIKFASTSNIKVRDILLSLLDRF 1322
                  9********9999********99765 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 0.76
                  HHHHHHCTTST CS
      PC_rep    4 lALGlihaGsg 14  
                  l+LG +++Gsg
  CCD25648.1 1478 LSLGFLFLGSG 1488
                  89*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1732 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.24s 00:00:01.18 Elapsed: 00:00:00.46
# Mc/sec: 11364.56
//
Query:       CCD25649.1  [L=461]
Description: hypothetical protein NDAI_0F03310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-15   55.9   1.5    4.2e-15   55.7   0.2    1.8  2  AMPK1_CBM  Glycogen recognition site of AMP-activated protein


Domain annotation for each model (and alignments):
>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.2   2.3e-19   4.2e-15       4      81 ..       9      93 ..       6      97 .. 0.88
   2 ?   -3.5   0.1      0.72   1.3e+04      51      81 ..     151     181 ..     148     184 .. 0.66

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 2.3e-19
   AMPK1_CBM  4 vikWkg.gGkkVyvtGsfnnWkkkipLk......ksekdfsvilkLpeGthqykFiVDgewrvdpdlptatdeeGnlnNvievke 81
                 + W++   k+V+vtG f++Wk +i++       + + +f + ++ ++Gt  +kFiVDg+w ++p  + + d++Gn+nN+i++++
  CCD25649.1  9 PFVWSEgHPKEVTVTGPFDDWKGSIHMIkdeltgSFSAEFPIEIDGRDGTFIFKFIVDGHWLINPVYKSIYDDNGNQNNYISIED 93
                58999856799****************97776655557888899999***********************************985 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.72
   AMPK1_CBM  51 FiVDgewrvdpdlptatdeeGnlnNvievke 81 
                 F + g+   ++ l+ +  ++ ++ N i+v++
  CCD25649.1 151 FNISGQDESQKVLEEEVGKQEKVQNEISVEN 181
                 5556666666666666677777888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1291  (0.0720062); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3507.38
//
Query:       CCD25650.1  [L=399]
Description: hypothetical protein NDAI_0F03320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-27   95.4   1.1    6.9e-18   64.2   0.1    3.5  3  RRM_1        RNA recognition motif. (a.k.a. RRM, RBD, or RNP 
     0.0011   19.1   0.4        1.5    9.0   0.0    3.1  2  RRM_7        RNA recognition motif
     0.0029   17.6   0.1     0.0077   16.2   0.0    1.7  2  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   9.9e-05      0.59       1      20 [.     127     146 ..     127     153 .. 0.93
   2 !   18.2   0.0   2.7e-07    0.0016      32      69 ..     174     211 ..     162     212 .. 0.89
   3 !   64.2   0.1   1.2e-21   6.9e-18       1      70 []     240     310 ..     240     310 .. 0.97

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 9.9e-05
                 EEEESETTTSSHHHHHHHHH CS
       RRM_1   1 lfVgnLppdvteeeLkelFs 20 
                 +++gnL++d+t+ee+ ++F 
  CCD25650.1 127 VWIGNLSFDTTKEEIIKFFV 146
                 79***************995 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 2.7e-07
                 EE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  32 rd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +d ++ k+kgf++++F++ke+ +++++ l + +l+gr+l
  CCD25650.1 174 NDgKKIKNKGFCYMDFKTKEQLDSIVK-LSENQLNGRNL 211
                 4578899********************.*********87 PP

  == domain 3  score: 64.2 bits;  conditional E-value: 1.2e-21
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 lfVgnL++d+t+e L+++F+++G+i +i++ +    gk kgfafV+F+++e A++Al+    +k+ gr+l+
  CCD25650.1 240 LFVGNLSFDTTDELLRKHFQHCGEIIKIRMATFeDSGKCKGFAFVDFKNEEGATNALKDKTCRKIAGRPLR 310
                 8*******************************99*************************999***999985 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0011       6.7       4      74 ..     127     206 ..     123     222 .. 0.70
   2 !    9.0   0.0   0.00026       1.5       1      68 [.     237     297 ..     237     326 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0011
       RRM_7   4 vFvGGlPiDiteeelkatfkefgkvlvdwPkk.aeskkkaae........nskaakgyvflvfedeksvkaLleacteee 74 
                 v++G l  D t+ee+++ f +  k   +   + +e++  + +        ++  +kg+ ++ f++++ + ++++ ++++ 
  CCD25650.1 127 VWIGNLSFDTTKEEIIKFFVAKTKSEDNEASQvTENDIIRVNmplakndgKKIKNKGFCYMDFKTKEQLDSIVKLSENQL 206
                 88999999999999999998877776555555333322222255566666566789**********99999998777665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00026
       RRM_7   1 srkvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLle 68 
                 sr +FvG l  D t+e l + f++ g+++     k ++++ +   s   kg++f+ f++e+  ++ l+
  CCD25650.1 237 SRILFVGNLSFDTTDELLRKHFQHCGEII-----KIRMATFED--SGKCKGFAFVDFKNEEGATNALK 297
                 7889**********************985.....334333322..33357999999988876665554 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.5   8.9e+03      35      46 ..     181     192 ..     165     194 .. 0.75
   2 !   16.2   0.0   1.3e-06    0.0077      16      53 .]     253     296 ..     246     296 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.5
  Nup35_RRM_2  35 evsvmyvkfese 46 
                  ++ + y+ f+++
   CCD25650.1 181 NKGFCYMDFKTK 192
                  566889999876 PP

  == domain 2  score: 16.2 bits;  conditional E-value: 1.3e-06
  Nup35_RRM_2  16 lVlehFasfGeIvkhyvp......kevsvmyvkfesekdaekAL 53 
                  l + hF+++GeI k+ +       k + +++v f++e  a  AL
   CCD25650.1 253 LLRKHFQHCGEIIKIRMAtfedsgKCKGFAFVDFKNEEGATNAL 296
                  5577**********99999999998899*********9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1617  (0.0901891); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2752.79
//
Query:       CCD25651.1  [L=662]
Description: hypothetical protein NDAI_0F03330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.021   15.1   0.0       0.23   11.8   0.0    2.5  2  Orf78     Orf78 (ac78)


Domain annotation for each model (and alignments):
>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.095   1.7e+03      33      71 ..     359     399 ..     336     414 .. 0.56
   2 ?   11.8   0.0   1.3e-05      0.23      45      98 ..     467     519 ..     453     525 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.095
       Orf78  33 kaenkkekksaaeknditekesn..aaekaqalnillisll 71 
                 k++++++++s++ +++i++ e++  ++++ +++++ll+++l
  CCD25651.1 359 KPSSSSKSESSSFHSKISNVENSliKSSTSTNEELLLTAIL 399
                 33344444444555555554444444444455555555555 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 1.3e-05
       Orf78  45 eknditekesnaaekaqalnillisllavvcvlvllyviyYfvilrerqkssvk 98 
                 +++++t+++++ +++++++ +++ ++++ +cv  l  +i++ +i+r r+++s+k
  CCD25651.1 467 DSQQLTSNSHD-QTRTNKKGAIIGGVVSGICVASLCAAIIWVFIIRVRRRRSRK 519
                 45556665555.7888888999*******************9999999988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1087  (0.060628); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4572.56
//
Query:       CCD25652.1  [L=307]
Description: hypothetical protein NDAI_0F03340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-22   79.2   0.0      4e-22   78.4   0.0    1.4  1  Ribosomal_L22  Ribosomal protein L22p/L17e


Domain annotation for each model (and alignments):
>> Ribosomal_L22  Ribosomal protein L22p/L17e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   2.3e-26     4e-22       4     103 .]     166     266 ..     163     266 .. 0.95

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 2.3e-26
                    EEESS-HHHHHHHHHHHTTSBHHHHHHHHHT-SSTTHHHHHHHHHHHHHHHH..HT-GGGEEEEEEEEEEEEEE.EEEEEESTTEEEEEEEEEEEE CS
  Ribosomal_L22   4 snlrvsfkklrevarlIrgmkveeAlkyLkfskkkaakfvlklLknaeanaelkgldvdslvIeeiqvnkgpkl.krrtyrArGrinpirkspchi 98 
                      ++ s+kk++  +rl+ g +v++Al++++f+kkk+a++v+ lL++      + gl++d+l+I++i+ +    + +r++y+ArGr+++ir++++h+
     CCD25652.1 166 FRIKSSMKKTNIFLRLLGGLDVKKALTQCHFAKKKVARDVAGLLEKGMTDSNKLGLNPDDLYISQIWTGSDGSWtQRLDYKARGRVGIIRHRYVHV 261
                    57999***************************************************************98766549******************** PP

                    EEEEE CS
  Ribosomal_L22  99 evvlk 103
                    +++lk
     CCD25652.1 262 RCILK 266
                    ***96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2230.66
//
Query:       CCD25653.1  [L=243]
Description: hypothetical protein NDAI_0F03350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-23   82.0   0.6    1.7e-22   79.7   0.7    2.0  2  Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
    6.8e-12   45.0   0.1    3.3e-11   42.8   0.1    2.0  2  KH_2            KH domain


Domain annotation for each model (and alignments):
>> Ribosomal_S3_C  Ribosomal protein S3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.26   2.3e+03      20      34 ..      27      41 ..      12      42 .. 0.60
   2 !   79.7   0.7   1.9e-26   1.7e-22       3      83 .]     107     188 ..     105     188 .. 0.97

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.26
                    HHHHHCC-SEEEEEE CS
  Ribosomal_S3_C 20 rramkagakGikiqv 34
                    r++ ++g  G++++v
      CCD25653.1 27 RELAEEGYSGVEVRV 41
                    444555555555554 PP

  == domain 2  score: 79.7 bits;  conditional E-value: 1.9e-26
                     HHHHTT--HHHHHHHHHHHHHHCC-SEEEEEEEC-SS.TTT--EEEEEEC----..TCHHHH-EEEEEEEEETTEEEEEEEEE CS
  Ribosomal_S3_C   3 eqlekrvsfRramkkairramkagakGikiqvsGrLggaeiarsekykeGrvpl..htlradidyavaeaktkyGiiGvkVwI 83 
                      +l +++++Rra++ ++r +m++gakG++++vsG+L+ a +a+ +k+++G +++  +++++ id+a++++ +++G++G+kV+I
      CCD25653.1 107 FKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLR-AARAKAMKFADGFLIHsgQPVKDFIDTATRHVLMRQGVLGIKVKI 188
                     6899*********************************.*******************************************98 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.1   3.7e-15   3.3e-11       1      75 [.      20      93 ..      20      96 .. 0.92
   2 ?   -0.8   0.0      0.15   1.4e+03       8      37 ..     103     133 ..      99     134 .. 0.80

  Alignments for each domain:
  == domain 1  score: 42.8 bits;  conditional E-value: 3.7e-15
                HHHHHHHHHTECETEEEEEEECCSCEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHHHHTTCEEEEEEEETT CS
        KH_2  1 eipeslaveikkagvskveIertanrviiviresqpgivIGkgGsnikkigkelrkdieklegkkVklnivkVkk 75
                e++e++++e++++g+s+ve++ t+ +++++ir+ + + v+G +G++i++++  ++k++ k   + + l+ ++V+ 
  CCD25653.1 20 ELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRF-KYTPGTIVLYAERVQD 93
                6899****************99************************************.5777779888888875 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.15
                 HHTECETEEEEEEECCS.CEEEEEEEESCHH CS
        KH_2   8 veikkagvskveIerta.nrviiviresqpg 37 
                 +++k++  +++ I+r+a   v++v+ ++ +g
  CCD25653.1 103 ESMKFKLLNGLAIRRAAyGVVRYVMESGAKG 133
                 5667777788999998889999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       358  (0.0199677); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1837.61
//
Query:       CCD25654.1  [L=310]
Description: hypothetical protein NDAI_0F03360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.2e-44  149.4   0.0    2.2e-43  147.7   0.0    1.9  1  Ras         Ras family
    8.6e-20   71.2   0.2    8.8e-19   67.9   0.0    2.8  2  Roc         Ras of Complex, Roc, domain of DAPkinase
    1.4e-05   24.6   0.5    0.00023   20.7   0.0    2.6  2  Arf         ADP-ribosylation factor family
     0.0028   17.2   0.1     0.0087   15.6   0.0    1.9  2  GTP_EFTU    Elongation factor Tu GTP binding domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.7   0.0   4.9e-47   2.2e-43       1     159 [.       5     205 ..       5     208 .. 0.96

  Alignments for each domain:
  == domain 1  score: 147.7 bits;  conditional E-value: 4.9e-47
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET...................TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd...................gkevkleiwDTAGqeefkslrelyyrdaegillvyd 80 
                 K+ ++Gd+avGKt+ll+++++++F+++y +T+ +d+y++++++                    ++  kl++wDTAGqee+++lr+l+y +++++l++++
  CCD25654.1   5 KICVIGDGAVGKTCLLISYTTNTFPQDYVPTV-FDNYSTTVSLTnpytnistdsnsnasssenKELFKLNLWDTAGQEEYDRLRPLSYPQTSVFLVCFS 102
                 899*****************************.*********9999**************9977889******************************** PP

                 TTBHHHHHTHH.HHHHHHHHHST..........TTSEEEEEEETTTGGG............G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHH CS
         Ras  81 itsresfenvk.kwveeikrvae..........envpivLvGnKvDlee............kravsteegeelakelg.lkfletSAktnenveeafee 155
                 + + +sfenv  kw+ e+k+ a+           ++pi+LvG+K+Dl++            +  +s ++ +e  k+ g l ++e+SA t+ +++e+fe+
  CCD25654.1 103 VAEPSSFENVFeKWIPELKQSANiensqlylnfGKLPILLVGTKSDLRDdestqdklqesgSDFISLDQINERVKKAGlLGYVECSAATQSGIREVFEK 201
                 **********87**********9999999999977************************9999***************99******************* PP

                 HHHH CS
         Ras 156 llre 159
                 +++ 
  CCD25654.1 202 AIEL 205
                 9976 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0     2e-22   8.8e-19       1     108 [.       5     128 ..       5     149 .. 0.70
   2 ?   -2.6   0.4       1.4   6.3e+03      25      43 ..     218     236 ..     211     252 .. 0.47

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 2e-22
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEE.....EECGGSG.....GCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE. CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdflt.....kevtkik.....gvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd. 88 
                 K++++Gd++vGKt+ll ++++++f +++ +t+  +++t     + +t+i+     + +++++++ +kln+WDtaGqe+++ l+pl + + +++++++  
  CCD25654.1   5 KICVIGDGAVGKTCLLISYTTNTFPQDYVPTVFDNYSTtvsltNPYTNIStdsnsNASSSENKELFKLNLWDTAGQEEYDRLRPLSYPQTSVFLVCFSv 103
                 9**************************9999988876632222222333311111223334445599****************************9986 PP

                 ..GHHHHCH.HHHHHHHHHHCS..S CS
         Roc  89 ..srssenl.keWlkelkkvag..k 108
                    +s+en+ ++W+ elk+ a+  +
  CCD25654.1 104 aePSSFENVfEKWIPELKQSANieN 128
                 544466776599*****99875322 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.4
                 C-EEETTTTEEEEEEECGG CS
         Roc  25 sekekstigvdfltkevtk 43 
                 ++k+++t  v++  ++ +k
  CCD25654.1 218 ERKQQETERVKVEAEKKQK 236
                 3444444444443333222 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     5e-08   0.00023      14     171 ..       3     202 ..       1     206 [. 0.77
   2 ?   -1.9   0.3      0.44     2e+03      98     121 ..     235     258 ..     227     295 .. 0.60

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5e-08
                 EEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEE.EEE.....................TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEE CS
         Arf  14 elrilllGLDnaGKtTilkklkleelvt.tvPTigfnvee.lei.....................knlkftvwDvGGqeklRplWknYfektdavifvv 89 
                 +++i ++G  + GKt +l  ++++ + +  vPT+  n  + ++                      + +k+++wD  Gqe+  +l    +++t + + + 
  CCD25654.1   3 NIKICVIGDGAVGKTCLLISYTTNTFPQdYVPTVFDNYSTtVSLtnpytnistdsnsnasssenkELFKLNLWDTAGQEEYDRLRPLSYPQTSVFLVCF 101
                 68999***9999***********99976599**98886541555889999999****99999986668************99999999*****999999 PP

                 ETT-CTTHHHHHH....HHHHHCTSGCCT......TSEEEEEEE-TTSTTSS-HHHHHHH.....TTGGGSS....SSSSEEEEEEBTTTTBTHHHHHH CS
         Arf  90 DsadreRleeake....eLkalleeeelk......evallvlaNKqDlpealseeelrel.....lgleelk....gkrkleiqkcsavkgeglkegle 169
                  +a+ + +e+  e    eLk+  + e+ +      + ++l+++ K Dl+++ s+++  ++     ++l++++    ++  l  ++csa +++g+ e +e
  CCD25654.1 102 SVAEPSSFENVFEkwipELKQSANIENSQlylnfgKLPILLVGTKSDLRDDESTQDKLQEsgsdfISLDQINervkKAGLLGYVECSAATQSGIREVFE 200
                 8888777665543222278877777766677888899************998876544330111155666444332566677899**********9998 PP

                 HH CS
         Arf 170 wl 171
                 + 
  CCD25654.1 201 KA 202
                 76 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.44
                 HHHHHHHHHHCTSGCCTTSEEEEE CS
         Arf  98 eeakeeLkalleeeelkevallvl 121
                 ++akee ++l +++e+ke+  l l
  CCD25654.1 235 QKAKEEQARLRKNKEIKEARNLKL 258
                 444444445555555544444433 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-06    0.0087       4     191 ..       4     205 ..       1     207 [. 0.76
   2 ?   -2.3   0.5      0.61   2.7e+03     148     148 ..     242     242 ..     215     300 .. 0.61

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.9e-06
                 EEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEE CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvd 102
                 ++i++ig+   GKt+L+ + +++t   +   ++ ++ +++ +l +   +  T + +++s +++++ +++nl Dt G +++ +    ++ ++ + ++ ++
  CCD25654.1   4 IKICVIGDGAVGKTCLLISYTTNTFPQDYVPTVFDNYSTTVSLTNPYTNISTDSNSNASSSENKELFKLNLWDTAGQEEYDRLRPLSYPQTSVFLVCFS 102
                 6899************86666666665555555465555666666666666666666666679999*****************9999999999999999 PP

                 TTTB..............STHHHHHHHHHHHHTT.TEEEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHH CS
    GTP_EFTU 103 aveG..............vepqteevlrlalkeg.vpiivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvktll 185
                 ++e                ++   e+ +l l+ g +pi ++ +K D   +++ +   +e  +++  + +++++ + k+      v +Sa ++ g+++++
  CCD25654.1 103 VAEPssfenvfekwipelKQSANIENSQLYLNFGkLPILLVGTKSDLRdDESTQDKLQESGSDF-ISLDQINERVKKA-GLLGYVECSAATQSGIREVF 199
                 9977888888888988886666666666666665156777779***997666677777777777.5667777776666.48889*************99 PP

                 HHHHHH CS
    GTP_EFTU 186 ealvel 191
                 e  +el
  CCD25654.1 200 EKAIEL 205
                 988875 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.61
                 H CS
    GTP_EFTU 148 q 148
                  
  CCD25654.1 242 A 242
                 2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2898  (0.161638); expected 358.6 (0.02)
Passed bias filter:                      736  (0.0410508); expected 358.6 (0.02)
Passed Vit filter:                       140  (0.00780858); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 2093.42
//
Query:       CCD25655.1  [L=433]
Description: hypothetical protein NDAI_0F03370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-10   39.0   0.0    1.5e-08   34.3   0.0    2.3  2  adh_short     short chain dehydrogenase
    6.3e-07   29.2   0.0      2e-06   27.5   0.0    1.8  2  adh_short_C2  Enoyl-(Acyl carrier protein) reductase
    5.4e-05   23.2   0.0    9.9e-05   22.3   0.0    1.4  1  KR            KR domain
  ------ inclusion threshold ------
       0.74    9.5   0.0       0.74    9.5   0.0    2.3  3  DUF21         Cyclin M transmembrane N-terminal domain
        7.7    6.6   6.5       0.41   10.7   0.3    2.0  2  DUF3012       Protein of unknown function (DUF3012)


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   4.2e-12   1.5e-08       1     127 [.      54     193 ..      54     211 .. 0.85
   2 ?    2.1   0.0     0.032   1.2e+02     168     186 ..     265     283 ..     257     291 .. 0.78

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 4.2e-12
                 SEEEEEST.TSHHHHHHHHHHHHTT-EEEEEESC.HHHHHHHHHHHHHT..TSEEEEEE-TTTSHHHHHHHHHHHHHHH..SSESEEEE---S...... CS
   adh_short   1 kvvlvtGa.ssGIGraiakelakeGakvvvvdrs.eekleevakelkee..gakalaiqvDvtdreevealvekavkkl..gkldvLvnNAGi...... 87 
                 kv +vtGa s+G+G  ++ ++a+ Ga+++++ r+ +e   e+++ l+++  ++ +++ q+D+++  ev+++  +  ++    +ld ++   G       
  CCD25655.1  54 KVYIVTGAtSQGMGTSVVLQMAQLGAQLIILTREvDEWSTEWCEDLRDKtgNELIFMEQCDLNNLWEVRKFATNWLNNSppRRLDGVIVMSGDmepwgl 152
                 6889***9568*******************66651566789*******99555577779*************9999999899*****999998899999 PP

                 .S--SSGGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCT CS
   adh_short  88 .tgsgpfselseeewervievNltgvflltravlpamlkqs 127
                    s+p+ + se+  e  +++N++gvf+l  ++ p +++q 
  CCD25655.1 153 pIVSRPTRRSSEDGLELQMATNFVGVFHLLNLLQPSFKAQP 193
                 88889999999999*******************99999553 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.032
                 GGGTEEEEEEEESSBSSHH CS
   adh_short 168 aptgirvnavaPGlvdTdm 186
                   ++++v++v+PG +++  
  CCD25655.1 265 TGKNVTVSMVQPGTMRSSS 283
                 5678**********99654 PP

>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   5.6e-10     2e-06       1     121 [.      60     198 ..      60     216 .. 0.89
   2 ?   -2.6   0.0      0.92   3.3e+03     160     180 ..     265     285 ..     261     292 .. 0.78

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 5.6e-10
                   TTT.TSHHHHHHHHHHHTT-EEEEEESSGGH..HHHHHHHHHHTTSE.E..EE--TTSHHHHHHHHHHHHHHH..SSEEEEEE-----EG.....CS CS
  adh_short_C2   1 Gaa.sgIGraiAkalaeeGaevvltdlneea..kkrveelaeelgae.v..lecDVtdeeqvealveevvekf..gklDilvnnagiapk.....lk 84 
                   Ga  +g+G  ++ ++a+ Ga++++  ++ ++   + +e+l +++g+e +   +cD ++  +v++++ +  ++    +lD+++   g +++     ++
    CCD25655.1  60 GATsQGMGTSVVLQMAQLGAQLIILTREVDEwsTEWCEDLRDKTGNElIfmEQCDLNNLWEVRKFATNWLNNSppRRLDGVIVMSGDMEPwglpiVS 156
                   7888********************999999988899*********9974679****************99999899**********99999999999 PP

                   S-GGGH-HHHHHHHHHHHTHHHHHHHHHHHHHCTSC.....C CS
  adh_short_C2  85 gpfletsreefdraldvnlyslfllakaalplmkeg.....g 121
                    p+   s+++++  +++n+ ++f+l++ ++p +k++      
    CCD25655.1 157 RPTRRSSEDGLELQMATNFVGVFHLLNLLQPSFKAQppdrdV 198
                   *******************************88876555544 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.92
                   GGGTEEEEEEEE--BHCTGGG CS
  adh_short_C2 160 gpkgiRvNavspgpikTlaas 180
                     k+++v  v pg ++  + +
    CCD25655.1 265 TGKNVTVSMVQPGTMRSSSLR 285
                   568999*******99977655 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.8e-08   9.9e-05       2      90 ..      55     145 ..      54     153 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 2.8e-08
                 EEEEETTT.SHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT.T-E.EEE----TT-HHHHHHHHHHHHHHS..S---EEEE--- CS
          KR   2 tylitGGl.GgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal.gae.vevvaaDvsdkdavealleeikaee..ppikGvihaAg 90 
                 +y++tG++  g+G++++ ++a+ ga+ l++l+R+  +de s+++ + l+++ g e + + ++D+ +  +v++  ++  ++   +++ Gvi + g
  CCD25655.1  55 VYIVTGATsQGMGTSVVLQMAQLGAQ-LIILTRE--VDEWSTEWCEDLRDKtGNElIFMEQCDLNNLWEVRKFATNWLNNSppRRLDGVIVMSG 145
                 7******8459*************96.6677899..99***********987776266789************999988886778999998776 PP

>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2       2.4   8.7e+03      91     103 ..     201     213 ..     198     213 .. 0.77
   2 ?    9.5   0.0   0.00021      0.74     120     145 ..     293     318 ..     288     376 .. 0.80
   3 ?   -1.7   0.7      0.56     2e+03      14      50 ..     396     424 ..     391     430 .. 0.48

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.4
       DUF21  91 vivtllilvfgEi 103
                 +++t+ + vfgEi
  CCD25655.1 201 IVTTCWLQVFGEI 213
                 45599999***98 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00021
       DUF21 120 lapplrvlmvllyPlvwllskllnli 145
                 + +++ +++++lyPl+wl++k++n  
  CCD25655.1 293 VLVLIFLYSIILYPLLWLFTKSANRG 318
                 56789999**************9975 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.56
       DUF21  14 sgaEtAlvslsrlrleelaekgkkkakrllkllknpe 50 
                 +++E++ ++ s+++ e++++++        k  ++p+
  CCD25655.1 396 ASSEFSSSKESKAKTEKQRQNQ--------KQKQKPK 424
                 4455555555555555544444........4444444 PP

>> DUF3012  Protein of unknown function (DUF3012)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   0.00011      0.41       3      18 ..      92     107 ..      92     114 .. 0.80
   2 ?   -3.2   1.2       2.7   9.5e+03      11      19 ..     420     428 ..     418     431 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00011
     DUF3012   3 SeeWCedMkeKpkgdW 18 
                 S eWCed+++K  +++
  CCD25655.1  92 STEWCEDLRDKTGNEL 107
                 889********87765 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.7
     DUF3012  11 keKpkgdWt 19 
                 k+Kpk+ ++
  CCD25655.1 420 KQKPKQNLN 428
                 689**9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2528  (0.141001); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        89  (0.00496402); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 3080.81
//
Query:       CCD25656.1  [L=562]
Description: hypothetical protein NDAI_0F03380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-07   30.8   0.1    0.00034   20.9   0.0    4.1  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    1.5e-06   28.8   0.6        3.4    8.7   0.0    4.7  4  WD40           WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.058   13.2   0.1       0.17   11.7   0.1    1.8  1  DASH_Dam1      DASH complex subunit Dam1


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.63   3.8e+03      49      82 ..       2      35 ..       1      43 [. 0.78
   2 ?    3.8   0.0     0.012        73      12      65 ..     105     158 ..     101     165 .. 0.87
   3 ?   -2.6   0.0       1.2     7e+03      49      67 ..     198     216 ..     196     224 .. 0.82
   4 ?   -0.8   0.0      0.31   1.9e+03      41      81 ..     264     307 ..     261     321 .. 0.66
   5 !   20.9   0.0   5.7e-08   0.00034      35      80 ..     341     386 ..     326     393 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.63
  ANAPC4_WD40 49 dgklLavaysdgevrlldaesgkvvhslsvksek 82
                 d++l+   ++ g++  +++ ++  +++++v+s +
   CCD25656.1  2 DEQLIFTTTNAGTITNIHSGEQSNLRQCTVGSPN 35
                 6788888888999999999988889998888876 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.012
  ANAPC4_WD40  12 latedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrll 65 
                    te+g+l++  ln   + +++  ++ +++++++  ++gk    + +d +v + 
   CCD25656.1 105 ASTESGKLYIWELNSGILLNVKPMAHYQSITKIKSIMNGKYVITSGNDARVIIW 158
                  5689999999999999999999999999******99999999999999998876 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 1.2
  ANAPC4_WD40  49 dgklLavaysdgevrllda 67 
                  +g +L  a +d++vr +d 
   CCD25656.1 198 SGLILFTASQDSTVRCYDL 216
                  6788999999999998885 PP

  == domain 4  score: -0.8 bits;  conditional E-value: 0.31
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrl...ldaesgkvvhslsvkse 81 
                  ++sL+  p ++ +  ++++g   l   ++ ++ ++v+ l+ ++e
   CCD25656.1 264 INSLCLDPADRAMYLGTNNGCFALdlfYKLKNNRIVNLLQLNNE 307
                  67888888888888888888555422355666666666665555 PP

  == domain 5  score: 20.9 bits;  conditional E-value: 5.7e-08
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  + ++s+v++L+ ++dg+lLa++ s g++++ +++s++++++l+  +
   CCD25656.1 341 KVSSSHVTALKSSMDGTLLAIGDSMGKISITEIYSKQILKTLQPLT 386
                  567899**********************************998765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.24   1.5e+03      23      37 ..     100     115 ..      79     116 .. 0.70
   2 !    8.7   0.0   0.00057       3.4       9      37 ..     129     158 ..     122     159 .. 0.90
   3 !    8.6   0.1   0.00059       3.6       3      38 .]     171     215 ..     169     215 .. 0.77
   4 !    4.9   0.0    0.0091        54       8      29 ..     344     363 ..     338     368 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.24
                 SE.EEEEETTSEEEEE CS
        WD40  23 aw.lasGsdDgtvriW 37 
                 ++ l+++++ g+++iW
  CCD25656.1 100 PYlLLASTESGKLYIW 115
                 553457889******* PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00057
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +H +s+t ++   +g+++++++ D  v iW
  CCD25656.1 129 AHyQSITKIKSIMNGKYVITSGNDARVIIW 158
                 69889*************99999******* PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00059
                 EEEEEESS.SSEEEEE........EETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtsla........fspdgawlasGsdDgtvriWd 38 
                 ++ +l  H  +vt+++         s +g  l+++s D tvr +d
  CCD25656.1 171 PICILHDHsLPVTDFQvslthgdfLSNSGLILFTASQDSTVRCYD 215
                 566777885459999998888886666666678*********998 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0091
                 ESSSSEEEEEEETTSSEEEEEE CS
        WD40   8 tGHssvtslafspdgawlasGs 29 
                 + H  vt+l+ s dg++la G+
  CCD25656.1 344 SSH--VTALKSSMDGTLLAIGD 363
                 456..*************9983 PP

>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.8e-05      0.17       4      30 ..     528     554 ..     526     561 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.8e-05
   DASH_Dam1   4 afaeLaDsletLdknledLqqihesLs 30 
                 ++aeL+++++tL++ ++dL ++he+L 
  CCD25656.1 528 EIAELKKNIATLTSAYKDLRDMHEKLY 554
                 799**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1315  (0.0733449); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4251.12
//
Query:       CCD25657.1  [L=777]
Description: hypothetical protein NDAI_0F03390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-43  148.5   0.0    4.3e-43  147.6   0.0    1.5  1  Pkinase      Protein kinase domain
    4.9e-22   78.4   0.0    7.5e-22   77.9   0.0    1.2  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
      0.012   15.2   0.4        1.9    8.1   0.0    2.7  2  FTA2         Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.0   7.2e-47   4.3e-43       4     198 ..     487     688 ..     484     724 .. 0.92

  Alignments for each domain:
  == domain 1  score: 147.6 bits;  conditional E-value: 7.2e-47
                 EEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH...HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   4 leklGeGsfGkVykaveketgkivAvKkikkekakkkke...kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                    lG G+ G+V   ++  ++ki+AvK+++ + ++++k+   kk+++E  i  +l+hpni+  +e+++e+++++ v+ey++ + l+ ++  + ++s ee
  CCD25657.1 487 GDDLGAGAGGSVKLFKRLIDKKIFAVKEFRSKFENESKRdyvKKITSEYCIGTTLNHPNIISTIEIIYENERILQVMEYCDYD-LFAIVM-SNKMSYEE 583
                 678****************************9999999889****************************************88.666664.46789999 PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHH CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvlkeney.skkvDvWslGvilyellt 192
                 +   +kqil+g++ylHs g+ HrDlK +N  i+++g +K++DFG a  ++   +     ++ +vg+  YlAPEv   ++y  ++vD+Ws ++i+++++ 
  CCD25657.1 584 ICCCFKQILTGVQYLHSIGLAHRDLKLDNCVINSQGIVKLIDFGAAVVFSYPFSkslveASGIVGSDPYLAPEVCIFTKYdPRPVDIWSSAIIFACMIL 682
                 999**********************************************9987788999999*************888896889*************** PP

                 SS-STT CS
     Pkinase 193 gkppfs 198
                 +k p++
  CCD25657.1 683 KKFPWK 688
                 *****9 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   1.2e-25   7.5e-22       2     195 ..     485     677 ..     484     696 .. 0.83

  Alignments for each domain:
  == domain 1  score: 77.9 bits;  conditional E-value: 1.2e-25
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH....HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee....keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  ++g++lG+Ga G+V   +       ++   avK ++++ ++e+     +++++e+ i ++l+hpni++ + +++++e++l v+ey+++  +   + + 
   CCD25657.1 485 KTGDDLGAGAGGSVKLFKRL----IDKKIFAVKEFRSKFENESkrdyVKKITSEYCIGTTLNHPNIISTIEIIYENERILQVMEYCDYDLFAIVMSN- 577
                  6788999***9999988777....5677889999976655555122267788899999******************************655555554. PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET.TTSSEE.EETTSSTSGGGGS-HHHHHHSEEEHH.HHHHH CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi.ekddey.vkkeeaklpvkWmapEslkekkftsk.sDvWs 190
                     k+++++++++  q+  G++yL+s  l Hrdl   N++++++ +vk+ DfG a    +  ++  v++++   +  ++apE+   +k+  +  D+Ws
   CCD25657.1 578 ---KMSYEEICCCFKQILTGVQYLHSIGLAHRDLKLDNCVINSQGIVKLIDFGAAVVFsYPFSKSlVEASGIVGSDPYLAPEVCIFTKYDPRpVDIWS 672
                  ...6*************************************************999885444444367777778889*****999999875438**** PP

                  HHHHH CS
  Pkinase_Tyr 191 fGvll 195
                   +++ 
   CCD25657.1 673 SAIIF 677
                  88765 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.004        24      28      68 ..     488     530 ..     474     548 .. 0.72
   2 ?    8.1   0.0   0.00031       1.9     157     214 ..     570     629 ..     538     630 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.004
        FTA2  28 eyLgkglhs..iVlkvkirgkeYALKlFrfleaeeleeaeedl 68 
                 + Lg+g+ +   ++k  i++k++A+K Fr   ++e ++++ ++
  CCD25657.1 488 DDLGAGAGGsvKLFKRLIDKKIFAVKEFRSKFENESKRDYVKK 530
                 55755444423789999************99887776554444 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00031
        FTA2 157 iraIVKelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyidg.....kLvDlsaa 214
                 + aIV      k + e +   ++++l  ++ lh+ g+ +rDlk +n++ +     kL+D++aa
  CCD25657.1 570 LFAIVMS---NKMSYEEICCCFKQILTGVQYLHSIGLAHRDLKLDNCVINsqgivKLIDFGAA 629
                 5666666...3444455667899***********************98442335578999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1235  (0.0688828); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.75u 0.25s 00:00:01.00 Elapsed: 00:00:00.39
# Mc/sec: 5908.55
//
Query:       CCD25658.1  [L=149]
Description: hypothetical protein NDAI_0F03400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-26   92.5   0.3    1.6e-26   91.9   0.3    1.3  1  Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
    2.7e-25   88.7   0.4    4.2e-25   88.1   0.4    1.3  1  Ribosomal_L11    Ribosomal protein L11, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L11_N  Ribosomal protein L11, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.3   1.7e-30   1.6e-26       6      65 .]       8      68 ..       3      68 .. 0.96

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 1.7e-30
  Ribosomal_L11_N  6 kvvklrvpaGkAtpaPplGpaLGplGlnikkfckefnkaTkd.kkglripVkitvyqdrsf 65
                       vkl+v aG+A+p+Pp+GpaLG++G+++++fckefn++ ++ k+g++ipV it+++drsf
       CCD25658.1  8 VLVKLIVGAGQAAPSPPVGPALGSKGIKAMDFCKEFNARSANyKPGVPIPVLITIKPDRSF 68
                     579*********************************************************9 PP

>> Ribosomal_L11  Ribosomal protein L11, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.4   4.7e-29   4.2e-25       1      70 []      73     147 ..      73     147 .. 0.95

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 4.7e-29
                    ---SHHHHHHHHHTXSSXXSST....TTSXXEEEEHHHHHHHHHHHGGGHT.XS.SHHHHHHHHHHHHCTTTEEE CS
  Ribosomal_L11   1 ktPptsylLkkaagiekgsgkp....gketvGtvslkqvyeIAkiKksdln.aalsleaavksilgtArsmGikV 70 
                    k+Ppt ylL+ka+g ekg+g+p    +  ++G++slk++yeIAkiK++d++ a l+ +++v si+g A+smGikV
     CCD25658.1  73 KSPPTGYLLLKAIGKEKGHGQPdirnKDRIIGELSLKHIYEIAKIKQTDERhALLETKGIVTSIIGVAKSMGIKV 147
                    79********************999666788******************999**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1138.93
//
Query:       CCD25659.1  [L=870]
Description: hypothetical protein NDAI_0F03410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-47  162.8   3.0      1e-47  162.8   3.0    2.3  2  UCH       Ubiquitin carboxyl-terminal hydrolase
    6.9e-16   58.7   6.1    6.9e-16   58.7   6.1    4.1  3  UCH_1     Ubiquitin carboxyl-terminal hydrolase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.0  10.3         2   1.8e+04      69     109 ..      74     116 ..       8     219 .. 0.60
   2 !  162.8   3.0   1.1e-51     1e-47       2     257 .]     443     817 ..     442     817 .. 0.93

  Alignments for each domain:
  == domain 1  score: -10.0 bits;  conditional E-value: 2
                 H..SH-CCEE--HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHH CS
                 x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH  69 l..kskskavsPkklkktlsklaksfsgykqqDaqEflaflLd 109
                 +  k+ +++v+Pk++ ++l+ +  s s+++   a ++++ l d
  CCD25659.1  74 NnnKKLKEQVKPKSMAEALHLYTTSSSTSTSASASDLTTSLPD 116
                 1333344455555555555555555444444444444444444 PP

  == domain 2  score: 162.8 bits;  conditional E-value: 1.1e-51
                 EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHH.......SH-CCEE--HHHHHHHHHHSGGGT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH   2 GlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkell.......kskskavsPkklkktlsklaksfs 93 
                 Gl+N G tCy n+++Q++++ip  ++yl ++ + k ++ +             + +++ l++  + ++       k+  ++++P++l++ l+ ++ s++
  CCD25659.1 443 GLINHGVTCYTNAAVQAMVHIPAVQHYLFDILRGKYKNIDP------------NSVSYTLAETTRRMWlsnkkgnKKVIAYYNPNELIERLDDINWSMN 529
                 9*****************************64444333322............23899999999999987755443334499***************** PP

                 SSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTSHHHHHH-EEEEE............................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................... RF
         UCH  94 gykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrndslitdlfegqlks............................................... 145
                  y+q+D++E+++ l+++l+e++             +  +s+i d+f+g l++                                               
  CCD25659.1 530 PYNQEDSHEYFMSLMSKLQENSVP--------IGRNMTESIIYDIFGGLLEQtvtckscggvskteqefydlsldlngkrnnpakdvqqsqeqvqsdhh 620
                 ***********************9........56677899*********************************************************** PP

                 ......................................................................................EEEEEEB-SEEEE CS
                 ......................................................................................xxxxxxxxxxxxx RF
         UCH 146 ......................................................................................klklkrlPeiLii 158
                                                                                                       + ++ r+Pe+L++
  CCD25659.1 621 hsddgndaeedsdngiaengknvqqpnaiiprsqspqeiipkqtkarkytiekairdffnpellkvdkndkgyvcekcnkttnaikRSTILRAPETLVV 719
                 *************************************************************************************************** PP

                 EEESEEETEE.EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-BEEEEEEEEEES.CTTSEEEEEEEECTTTTEEEEEETTEEEEE-HHCCCTT..CEE CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxx RF
         UCH 159 hlkRfsynss.ksKlntkvefpeeldlssylaeekkkkteekkkYeLiavvvHsG.slssGHYvayiknekngkWykydDetvkevkeeeevls..say 253
                 hlk+f++n s +sK+++ v++p +ld+++y++++kk       kY+L +vvvH G slssGHY+a+++ + +g W +ydDe +++++e  ++l+  +ay
  CCD25659.1 720 HLKKFRFNGStSSKMKQAVSYPMYLDITEYCESSKKV---LPAKYQLLSVVVHEGrSLSSGHYIAHCR-QPDGTWATYDDELINKISEL-KLLTepNAY 813
                 ********999********************955554...4568************************.55999*************76.78888**** PP

                 EEEE CS
                 xxxx RF
         UCH 254 iLfY 257
                  L+Y
  CCD25659.1 814 YLVY 817
                 ***9 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -14.8  19.9         2   1.8e+04      67     150 ..      79     174 ..      52     287 .. 0.48
   2 ?   -2.7   0.3      0.39   3.5e+03      77     124 ..     331     370 ..     317     417 .. 0.52
   3 !   58.7   6.1   7.7e-20   6.9e-16       2     318 ..     443     796 ..     442     798 .. 0.68

  Alignments for each domain:
  == domain 1  score: -14.8 bits;  conditional E-value: 2
                 xxxxxxxxxxxxxxxxxxxxx.xxxx................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
       UCH_1  67 Flralssipeasalglileee.eete................................kssaislssliqsfnrflldqlekelketkkns........ 124
                 + ++++  + a+al+l++ ++ ++t+                                                                +        
  CCD25659.1  79 LKEQVKPKSMAEALHLYTTSSsTSTSasasdlttslpdskrstvtfndtaseddsdnaY-------------------------------Ndsssssss 146
                 34445555568999998777644444333333333333333333333333333333330...............................223333333 PP

                 ..xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 125 ..seeesaieqllgtkaettirclkCgs 150
                   s ++ +i+++++t++ +++  +  ++
  CCD25659.1 147 snSDAPHSISKVIQTNTANNTDNNVSNE 174
                 3322222233333222222222221111 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.39
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx RF
       UCH_1  77 asalglileeeeetekssaislssliq.sfnrflldqlekelketkkns 124
                  ++++l         +++++++ + iq + ++ +l++   e + + ++ 
  CCD25659.1 331 SEKIQL---------QEENEQYMNSIQdKKQNNILEESRVEDEDEDEDD 370
                 344444.........2223344444443566666666555544443332 PP

  == domain 3  score: 58.7 bits;  conditional E-value: 7.7e-20
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx.xx.xxxxxxx..xxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplrnlalshlak..eckkehcLlcElgflf.dm.ldkakgl..ncqasn...Flralssipeasalglileeeeete 91 
                 GL nh v++Y+N+ +Q++ +ip +++ +   l    ++ + +++++ l     +m l+++kg+   +   n   + + l+ i    +++ + +e+    
  CCD25659.1 443 GLINHGVTCYTNAAVQAMVHIPAVQHYLFDILRGkyKNIDPNSVSYTLAETTrRMwLSNKKGNkkVIAYYNpneLIERLDDIN--WSMNPYNQED---- 535
                 999*********************96555554332489999******999995331333333320222222000333333332..2222222221.... PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x...................... RF
       UCH_1  92 kssaislssliqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyP.k...................... 167
                   s+        +    l+++l++++ +     + +es+i +++g  +e+t++c++Cg  ++ ++ ++ l+l    k                      
  CCD25659.1 536 --SH--------EYFMSLMSKLQENSVPIGR--NMTESIIYDIFGGLLEQTVTCKSCGGVSKTEQEFYDLSLDLNgKrnnpakdvqqsqeqvqsdhhhs 622
                 ..11........3556666666666666544..67899*******************************977552223344456777777777777666 PP

                 ..............xxxx.........................xxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 168 ..............psne.........................kkeakvtfasilkssler......ekttrawCekCkryqpteqrktvknlPpvLal 221
                                  e                          k+ k+t+++ ++ +++       ++++ ++CekC++ ++  +r+t+ + P+ L++
  CCD25659.1 623 ddgndaeedsdngiA--EngknvqqpnaiiprsqspqeiipkqTKARKYTIEKAIRDFFNPellkvdKNDKGYVCEKCNKTTNAIKRSTILRAPETLVV 719
                 666666555555550..0555556666667777777788888888888************9898886666789************************** PP

                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 222 nakle.eeeelelwktknwlpleiklsldedknleeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWylFNDf 318
                 ++k +  +      k k+ ++  ++l+++e     ++       ++++   ++Y+L svvvh g s +sgh++++++          p++ W   +D 
  CCD25659.1 720 HLKKFrFNG-STSSKMKQAVSYPMYLDITEY----CE-------SSKKVLPAKYQLLSVVVHEGRSLSSGHYIAHCRQ---------PDGTWATYDDE 796
                 ***995443.333344455555555544442....22.......233456789*************99*********4.........34577777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1992  (0.111105); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.06u 0.33s 00:00:01.39 Elapsed: 00:00:00.51
# Mc/sec: 5137.54
//
Query:       CCD25660.1  [L=473]
Description: hypothetical protein NDAI_0F03420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 3908.19
//
Query:       CCD25661.1  [L=201]
Description: hypothetical protein NDAI_0F03430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-37  125.8   3.2    1.2e-36  125.5   3.2    1.1  1  Tim17           Tim17/Tim22/Tim23/Pmp24 family
  ------ inclusion threshold ------
      0.038   13.7   0.2          9    6.0   0.3    2.1  2  CbtA            Probable cobalt transporter subunit (CbtA)
       0.43   10.6   5.2       0.38   10.8   0.4    2.2  2  Gly-zipper_Omp  Glycine zipper


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   3.2   1.9e-40   1.2e-36       1     111 []      44     180 ..      44     180 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.5 bits;  conditional E-value: 1.9e-40
       Tim17   1 cvyktglsgvlGallGavfglvkgsrradtp........................apskerlreglrsvgkrgpslGknfgvvgglysgiecaleklRg 75 
                 c +kt++sgv G++lG+++gl+ +s+++dtp                        +p+k+++r ++ ++gk+++s++knfg++g++ysg+ec++e++R+
  CCD25661.1  44 CPGKTIISGVTGFALGGIMGLFLSSMAYDTPlhtpspttsiagingqamvkqfadLPMKQQIRLQFSDMGKKSYSSAKNFGYIGMIYSGVECTVESIRA 142
                 889************************************************************************************************ PP

       Tim17  76 kediwnsvaAGaltGall..ragpqaaavgaiggaafs 111
                 k+di n+++AG+ltG+ l  ++gpqaa+vg++g+aafs
  CCD25661.1 143 KNDIFNGLTAGCLTGGGLayKNGPQAALVGCAGFAAFS 180
                 ***************887446****************7 PP

>> CbtA  Probable cobalt transporter subunit (CbtA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0018        11      54     109 ..      27      82 ..       5      95 .. 0.72
   2 ?    6.0   0.3    0.0015         9      96     123 ..     156     182 ..     146     186 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0018
        CbtA  54 ehaeaeepelvsrgvqrtlgtvlanvltgvalglllaavfallegrlgklsarala 109
                 e++++  +el+++ +++  g ++   +tg+alg+++++ ++ +   ++ +++  ++
  CCD25661.1  27 EQQAERSAELMVDFMTSCPGKTIISGVTGFALGGIMGLFLSSMAYDTPLHTPSPTT 82 
                 234566777999************************99988776666544444444 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0015
        CbtA  96 legrlgklsaralalllalagflavvlv 123
                 ++g l + ++  +a+l++ agf+a++l+
  CCD25661.1 156 TGGGL-AYKNGPQAALVGCAGFAAFSLA 182
                 45555.4456778************997 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.5     0.039   2.3e+02      26      39 ..      50      63 ..      46      68 .. 0.71
   2 ?   10.8   0.4   6.4e-05      0.38       2      43 ..     149     188 ..     148     191 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.039
  Gly-zipper_Omp 26 iGAavGaavGgliG 39
                    i ++ G a+Gg+ G
      CCD25661.1 50 ISGVTGFALGGIMG 63
                    55677777777766 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 6.4e-05
  Gly-zipper_Omp   2 GaaiGAaaGaliGgavggrgtGaliGAavGaavGgliGaamd 43 
                     G ++G+++G+++++ +g+    al+G a  aa   +i  +m+
      CCD25661.1 149 GLTAGCLTGGGLAYKNGP--QAALVGCAGFAAFSLAIDLYMK 188
                     889**************8..8*****9998888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1436.66
//
Query:       CCD25662.1  [L=456]
Description: hypothetical protein NDAI_0F03440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
      0.068   13.3   0.7       0.24   11.5   0.7    1.9  1  Telomerase_RBD  Telomerase ribonucleoprotein complex - RNA bi
        4.7    7.6   9.8      0.098   13.0   1.8    2.4  3  Orf78           Orf78 (ac78)


Domain annotation for each model (and alignments):
>> Telomerase_RBD  Telomerase ribonucleoprotein complex - RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.7   2.7e-05      0.24      34     100 ..     358     449 ..     354     454 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.7e-05
                     HHCCH---SSS--TTTS-S--GGG-GGG-S.........................S.S------HHHHHHHHHHHHHHHHHHHHTCHHHHHH CS
  Telomerase_RBD  34 kfvklrrfeslslhevmqglkvsdvewlsp.........................ekeksqklslsdaekrkellseflywlfdslliplir 100
                     +f +lr++es+ +++v ++lk ++ +  +                          + +k+ ++++++  + +++ +ef+yw +  ++  l +
      CCD25662.1 358 SFTSLRSNESVAIEKVQEELKWNSAKLDQIlallhnnnhtkeskkskttnldvkeNIKKNMNHTNNKEMTARQFPKEFIYWTICIIILILCN 449
                     688999****************88865443667777777766666666666655533344455555999999*********99877766654 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       1.6   1.4e+04      35      44 ..     183     192 ..     169     211 .. 0.43
   2 ?   -2.8   0.1      0.88   7.9e+03      30      47 ..     238     255 ..     221     274 .. 0.51
   3 ?   13.0   1.8   1.1e-05     0.098      17      86 ..     387     455 ..     375     456 .] 0.45

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.6
       Orf78  35 enkkekksaa 44 
                 e++++ +++ 
  CCD25662.1 183 EDESHLQRQL 192
                 2222222222 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.88
       Orf78  30 dndkaenkkekksaaekn 47 
                 +++++e+ +e k++ +k+
  CCD25662.1 238 RSSQEEELEEPKTILKKE 255
                 223333333333444444 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 1.1e-05
       Orf78  17 IPLKLAlndldnddndkaenkkekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyYf 86 
                 I L L +n+ ++++++k+++++ + + + k++++++++++++++q+ + ++   ++++++++  + +yY+
  CCD25662.1 387 I-LALLHNNNHTKESKKSKTTNLDVKENIKKNMNHTNNKEMTARQFPKEFIYWTICIIILILCNIYVYYY 455
                 4.33333332222333333333333333344444444445667777666666666555544443444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1725  (0.0962128); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3305.47
//
Query:       CCD25663.1  [L=540]
Description: hypothetical protein NDAI_0F03450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-87  283.4  17.0    3.5e-13   49.1   0.0    8.3  8  Arm           Armadillo/beta-catenin-like repeat
    3.1e-27   94.9  10.2    9.5e-27   93.3  10.2    1.9  1  IBB           Importin beta binding domain
    1.5e-21   75.7   3.0    9.3e-21   73.1   3.8    2.0  2  Arm_3         Atypical Arm repeat
    1.2e-17   64.0   2.2    8.6e-06   26.1   0.0    6.9  8  HEAT_EZ       HEAT-like repeat
    2.1e-13   50.4   0.1    0.00072   19.9   0.0    4.8  5  HEAT_2        HEAT repeats
    1.8e-11   43.3   0.2       0.34   11.3   0.0    7.2  7  HEAT          HEAT repeat
    1.2e-06   28.2   0.2       0.26   10.7   0.0    4.0  4  Arm_2         Armadillo-like
    8.6e-05   22.6   0.3        1.3    9.1   0.2    3.9  3  V-ATPase_H_C  V-ATPase subunit H
    0.00013   22.1   3.9      0.034   14.4   0.0    4.8  5  RICTOR_V      Rapamycin-insensitive companion of mTOR, domain
     0.0011   17.6   1.9      0.022   13.4   0.2    2.8  3  Adaptin_N     Adaptin N terminal region
     0.0062   16.2   0.0        1.2    8.6   0.0    4.1  4  NopRA1        Nucleolar pre-ribosomal-associated protein 1
  ------ inclusion threshold ------
      0.029   14.1   0.8      0.055   13.2   0.8    1.4  1  O-FucT        GDP-fucose protein O-fucosyltransferase
      0.041   13.8   2.2        2.7    7.9   0.0    3.5  4  DUF3361       Domain of unknown function (DUF3361)
       0.25   12.1   4.5         19    6.3   0.0    4.8  4  HEAT_PBS      PBS lyase HEAT-like repeat
       0.61    8.8   6.0       0.14   10.9   0.9    2.3  3  SAPS          SIT4 phosphatase-associated protein
          9    6.1   9.3         12    5.8   3.2    2.6  2  XPC-binding   XPC-binding domain


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   1.8e-13     2e-10       2      41 .]     117     157 ..     116     157 .. 0.97
   2 !   49.1   0.0   3.1e-16   3.5e-13       1      40 [.     159     198 ..     159     199 .. 0.97
   3 !   32.0   0.0   7.3e-11   8.2e-08       2      41 .]     202     241 ..     201     241 .. 0.96
   4 !   20.0   0.0   4.4e-07   0.00049      11      41 .]     254     283 ..     244     283 .. 0.88
   5 !   26.0   0.1   5.6e-09   6.3e-06       2      40 ..     286     324 ..     285     325 .. 0.96
   6 !   47.7   0.2   8.6e-16   9.6e-13       1      41 []     327     367 ..     327     367 .. 0.95
   7 !   45.1   0.1   5.7e-15   6.4e-12       1      40 [.     369     408 ..     369     409 .. 0.95
   8 !   28.4   0.2   9.9e-10   1.1e-06       2      39 ..     415     452 ..     414     454 .. 0.95

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 1.8e-13
                 HHHHHHHHHTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs.sedeevqeeAawALsNLaa 41 
                 s+++d vi+ G+vp Lv++++ ++ e++q eAawAL+N+a+
  CCD25663.1 117 SPPIDIVIQTGIVPTLVEFMQeNQPEMLQLEAAWALTNIAS 157
                 899************************************96 PP

  == domain 2  score: 49.1 bits;  conditional E-value: 3.1e-16
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 +se++++v+eaGavp +++LL++++ evqe+A wAL+N+a
  CCD25663.1 159 SSEQTKVVVEAGAVPLFIQLLYTGSIEVQEQAIWALGNIA 198
                 69*************************************8 PP

  == domain 3  score: 32.0 bits;  conditional E-value: 7.3e-11
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                  + +d v +++a++p + L +++++++ + A+w+LsNL++
  CCD25663.1 202 TDYRDFVLRCNAMEPILGLFNNTKTSLIRTATWTLSNLCR 241
                 5789***********************************7 PP

  == domain 4  score: 20.0 bits;  conditional E-value: 4.4e-07
                 TTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm  11 aGavppLvrLLssedeevqeeAawALsNLaa 41 
                 + a+p+L +L++s d+e+  +A wA+s+L++
  CCD25663.1 254 L-ALPVLAKLIYSLDVETIVDASWAISYLSD 283
                 4.9**************************95 PP

  == domain 5  score: 26.0 bits;  conditional E-value: 5.6e-09
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 +e ++avi+a + ++Lv+LL ++++ vq+++++A++N+ 
  CCD25663.1 286 PEAIQAVIDARIPKRLVELLVHQSTLVQTPCLRAVGNIV 324
                 789**********************************96 PP

  == domain 6  score: 47.7 bits;  conditional E-value: 8.6e-16
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHTT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLaa 41 
                 n+ ++++vi+aG++ +L +LLss++e++++eA+w++sN++a
  CCD25663.1 327 NDLQTQTVINAGVLNALPNLLSSPKESIRKEACWTISNITA 367
                 5669***********************************96 PP

  == domain 7  score: 45.1 bits;  conditional E-value: 5.7e-15
                 SHHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   1 nsenkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 n e+++av +aG +ppLv+LL++   ++++eA+wA+sN +
  CCD25663.1 369 NVEQIQAVLDAGLIPPLVKLLDTAEYKTKKEACWAISNAS 408
                 679***********************************76 PP

  == domain 8  score: 28.4 bits;  conditional E-value: 9.9e-10
                 HHHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm   2 senkdavieaGavppLvrLLssedeevqeeAawALsNL 39 
                 +e +++++++++++pL++LL+  d +++e+A+ AL N+
  CCD25663.1 415 PEIIKYLVSQNCIKPLCDLLEIADNRILEVALEALENI 452
                 68899********************************9 PP

>> IBB  Importin beta binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3  10.2   8.5e-30   9.5e-27       1      89 [.      15     105 ..      15     106 .. 0.86

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 8.5e-30
                 XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............XXXXXXXXXXXX-----TT--------HHHH CS
         IBB   1 RlksfKnkgk.daeelRrrReeeqvelRKqkreeqllKrRnvaaeaaaeeeadseeee..eessaeekkleeleemvqgvnSddpelqleat 89 
                 R+++fKnkg+ +aeelRrrR+++qvelRK+kr+e+l+KrRn++a++  ++e+ ++e++   e+++ +++++el++mv++++S+d+++ql+at
  CCD25663.1  15 RRTNFKNKGRfSAEELRRRRDTQQVELRKAKRDETLAKRRNFNAATDVDSED-EDETNtvGEQQFMTQLQQELPRMVEQIHSNDMQDQLSAT 105
                 99****************************************8733333222.2222246779999*************************9 PP

>> Arm_3  Atypical Arm repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         7   7.8e+03      10      31 ..     337     358 ..     332     359 .. 0.83
   2 !   73.1   3.8   8.3e-24   9.3e-21       1      53 []     468     520 ..     468     520 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 7
       Arm_3  10 agGldkIeaLQnheneeIYkkA 31 
                 ag l  + +L ++  e I k A
  CCD25663.1 337 AGVLNALPNLLSSPKESIRKEA 358
                 8899999999999999998876 PP

  == domain 2  score: 73.1 bits;  conditional E-value: 8.3e-24
       Arm_3   1 npyalliEeagGldkIeaLQnheneeIYkkAlkIiekYFseeeeeddeelape 53 
                 n+ a+liE+agG++kI ++Q++en++IY+kA+ Iie+YF+e+e+  de+lap+
  CCD25663.1 468 NENADLIEKAGGMEKIFNCQQNENDKIYEKAYSIIETYFGEDEDAIDETLAPQ 520
                 7899**************************************88888888886 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       9.4   1.1e+04      17      31 ..      77      91 ..      73      98 .. 0.67
   2 !    8.5   0.0    0.0025       2.8      26      55 .]     125     155 ..     115     155 .. 0.88
   3 !   26.1   0.0   7.7e-09   8.6e-06       3      55 .]     144     197 ..     142     197 .. 0.89
   4 ?    0.2   0.0         1   1.1e+03       6      35 ..     231     261 ..     227     265 .. 0.56
   5 ?    3.9   0.0     0.071        80       7      54 ..     274     322 ..     272     323 .. 0.71
   6 !   14.7   0.0     3e-05     0.034       6      55 .]     315     365 ..     310     365 .. 0.74
   7 !   10.9   0.0   0.00046      0.52      28      54 ..     380     406 ..     367     407 .. 0.81
   8 ?    4.9   0.0     0.034        38       6      34 ..     399     422 ..     397     425 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 9.4
     HEAT_EZ 17 gepellqplvpeilp 31
                + + +lq+++p+++ 
  CCD25663.1 77 QFMTQLQQELPRMVE 91
                445667777776665 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0025
     HEAT_EZ  26 vpeilpaLlalLnddsdeV.RaaAagaLgnl 55 
                 ++ i+p L+ +++  ++e  +  Aa+aL+n+
  CCD25663.1 125 QTGIVPTLVEFMQENQPEMlQLEAAWALTNI 155
                 6789********99999666*********97 PP

  == domain 3  score: 26.1 bits;  conditional E-value: 7.7e-09
     HEAT_EZ   3 vRraAawaLGrlaggepellqp.lvpeilpaLlalLnddsdeVRaaAagaLgnl 55 
                 ++  AawaL ++a+g +e+ +  +   ++p++++lL + s eV+++A++aLgn+
  CCD25663.1 144 LQLEAAWALTNIASGSSEQTKVvVEAGAVPLFIQLLYTGSIEVQEQAIWALGNI 197
                 6778*****998877777766669999*************************98 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1
     HEAT_EZ   6 aAawaLGrlaggepellqp...lvpeilpaLla 35 
                  A w+L++l+ g +++  p    v+ +lp L++
  CCD25663.1 231 TATWTLSNLCRGKKPQ--PdwsIVSLALPVLAK 261
                 5778887765333333..223466666666665 PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.071
     HEAT_EZ   7 AawaLGrlaggepellqplvpeilpa.LlalLnddsdeVRaaAagaLgn 54 
                 A wa++ l  g pe++q ++++ +p  L+ lL + s +V++ +++a gn
  CCD25663.1 274 ASWAISYLSDGPPEAIQAVIDARIPKrLVELLVHQSTLVQTPCLRAVGN 322
                 88***99**********98888777425566665555666655555555 PP

  == domain 6  score: 14.7 bits;  conditional E-value: 3e-05
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLl.alLnddsdeVRaaAagaLgnl 55 
                  +++a+G++  g++ + q+++ + +   l +lL++++ ++R+ A+++++n+
  CCD25663.1 315 PCLRAVGNIVTGNDLQTQTVINAGVLNALpNLLSSPKESIRKEACWTISNI 365
                 5788999988777777777776666666645556666699*********97 PP

  == domain 7  score: 10.9 bits;  conditional E-value: 0.00046
     HEAT_EZ  28 eilpaLlalLnddsd..eVRaaAagaLgn 54 
                  ++p+L++lL  d +  ++++ A++a++n
  CCD25663.1 380 GLIPPLVKLL--DTAeyKTKKEACWAISN 406
                 689*******..8885677********98 PP

  == domain 8  score: 4.9 bits;  conditional E-value: 0.034
     HEAT_EZ   6 aAawaLGrlaggepellqplvpeilpaLl 34 
                  A+wa++++      +  ++ pei+++L+
  CCD25663.1 399 EACWAISNAS-----TGGLQRPEIIKYLV 422
                 799***8666.....88888899999999 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0018       2.1      31      63 ..     127     162 ..     112     170 .. 0.77
   2 !   19.9   0.0   6.4e-07   0.00072       1      62 [.     129     201 ..     129     237 .. 0.76
   3 !   10.1   0.0   0.00072      0.81      33      62 ..     172     201 ..     171     297 .. 0.67
   4 !   13.0   0.0   9.4e-05      0.11       4      67 ..     301     376 ..     297     381 .. 0.74
   5 !   10.7   0.0   0.00049      0.55       1      56 [.     382     450 ..     382     464 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0018
      HEAT_2  31 ealpaLvelleded.pavRraaaeaLgai..gdpea 63 
                  ++p+Lve+++    ++ + +aa+aL  i  g++e 
  CCD25663.1 127 GIVPTLVEFMQENQpEMLQLEAAWALTNIasGSSEQ 162
                 579*******6655268*********9883344554 PP

  == domain 2  score: 19.9 bits;  conditional E-value: 6.4e-07
      HEAT_2   1 ldaLlqalendpdpevrraairaLgrignp...........ealpaLvellededpavRraaaeaLgaigdpe 62 
                 +++L++++++   + ++ +a++aL +i++             a+p++++ll + + +v+++a++aLg i+ ++
  CCD25663.1 129 VPTLVEFMQENQPEMLQLEAAWALTNIASGsseqtkvvveaGAVPLFIQLLYTGSIEVQEQAIWALGNIAGDS 201
                 58899***99999999*********998775667777776677************************996332 PP

  == domain 3  score: 10.1 bits;  conditional E-value: 0.00072
      HEAT_2  33 lpaLvellededpavRraaaeaLgaigdpe 62 
                 +p++++ll + + +v+++a++aLg i+ ++
  CCD25663.1 172 VPLFIQLLYTGSIEVQEQAIWALGNIAGDS 201
                 666666666666667777777776664222 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 9.4e-05
      HEAT_2   4 LlqalendpdpevrraairaLg......rignp.....ealpaLvellededpavRraaaeaLgai..gdpealpaL 67 
                 L+++l  + ++ v+   +ra g      +++++      +l+aL +ll+++++ +R++a+++++ i  g+ e ++a 
  CCD25663.1 301 LVELL-VHQSTLVQTPCLRAVGnivtgnDLQTQtvinaGVLNALPNLLSSPKESIRKEACWTISNItaGNVEQIQAV 376
                 77777.6889999999999999665555233334444477************************9955455555554 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00049
      HEAT_2   1 ldaLlqalendpdpevrraairaLg.....rignpea.........lpaLvellededpavRraaaeaLg 56 
                 +++L+++l + ++++++++a++a+       ++ pe+         ++ L +lle +d ++ + a eaL 
  CCD25663.1 382 IPPLVKLL-DTAEYKTKKEACWAISnastgGLQRPEIikylvsqncIKPLCDLLEIADNRILEVALEALE 450
                 689*****.99**************888875555555222222222777777777777777777777775 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.031        35       1      30 [.     128     158 ..     128     159 .. 0.88
   2 !   11.3   0.0    0.0003      0.34       2      28 ..     172     198 ..     171     200 .. 0.95
   3 ?    0.5   0.0      0.87   9.7e+02       3      29 ..     215     241 ..     213     242 .. 0.76
   4 ?    1.5   0.0      0.43   4.8e+02       5      29 ..     301     325 ..     297     326 .. 0.89
   5 !    9.7   0.0   0.00099       1.1       2      28 ..     340     366 ..     339     368 .. 0.87
   6 ?    3.3   0.0      0.11   1.2e+02       1      26 [.     381     406 ..     381     410 .. 0.86
   7 ?    0.7   0.0      0.75   8.4e+02      12      30 ..     437     455 ..     425     456 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.031
                 HHHHHHHHHT-SSHH.HHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspe.VReaAakaLgalaev 30 
                 ++P+l++ ++ + pe     Aa+aL+++a++
  CCD25663.1 128 IVPTLVEFMQENQPEmLQLEAAWALTNIASG 158
                 7899999999999995599**********96 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.0003
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 +Pl+++ll   s eV e A++aLg++a
  CCD25663.1 172 VPLFIQLLYTGSIEVQEQAIWALGNIA 198
                 79***********************98 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.87
                 HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaLgalae 29 
                  ++l l + +  +  ++A ++L +l++
  CCD25663.1 215 EPILGLFNNTKTSLIRTATWTLSNLCR 241
                 566777777777777899*******97 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.43
                 HHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLgalae 29 
                 l++ll ++s  V   +++a+g+++ 
  CCD25663.1 301 LVELLVHQSTLVQTPCLRAVGNIVT 325
                 889999****************985 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.00099
                 HHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgala 28 
                 l++l +lls+p  ++R+ A++++ ++ 
  CCD25663.1 340 LNALPNLLSSPKESIRKEACWTISNIT 366
                 67777899****************996 PP

  == domain 6  score: 3.3 bits;  conditional E-value: 0.11
                 HHHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLga 26 
                 l+P+l+kll   + +  + A++a+ +
  CCD25663.1 381 LIPPLVKLLDTAEYKTKKEACWAISN 406
                 79*****9977888889999999875 PP

  == domain 7  score: 0.7 bits;  conditional E-value: 0.75
                 SSHHHHHHHHHHHHHHHHC CS
        HEAT  12 pspeVReaAakaLgalaev 30 
                  + ++ e A++aL ++++v
  CCD25663.1 437 ADNRILEVALEALENILKV 455
                 67788899******99986 PP

>> Arm_2  Armadillo-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.21   2.4e+02      44      91 ..     117     165 ..     111     170 .. 0.83
   2 !    9.9   0.0    0.0004      0.45     118     190 ..     151     227 ..     142     239 .. 0.76
   3 !   10.7   0.0   0.00023      0.26       6     100 ..     332     427 ..     327     437 .. 0.83
   4 ?    1.9   0.0      0.12   1.3e+02      46      79 ..     470     503 ..     466     514 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.21
       Arm_2  44 svnqdiirdlggitiianllsksnaevk.ekalnalnnlsenvenqkki 91 
                 s   di+ + g+++++ +++ ++++e+    a  al n ++++ +q+k+
  CCD25663.1 117 SPPIDIVIQTGIVPTLVEFMQENQPEMLqLEAAWALTNIASGSSEQTKV 165
                 55569999******99999999999876478999999999999998876 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0004
       Arm_2 118 lltnlsvtn.eyqhllvs..yisellsLLskGnekikvqvLkvllnlseNpamtrel.lsakvlssllslfnkkeak 190
                  ltn++  + e+  ++v+   ++ +++LL +G+ +++ q +  l n++   +  r++ l+ +++  +l lfn+ + +
  CCD25663.1 151 ALTNIASGSsEQTKVVVEagAVPLFIQLLYTGSIEVQEQAIWALGNIAGDSTDYRDFvLRCNAMEPILGLFNNTKTS 227
                 56666443303334444322699**************************999999852799**********987654 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 0.00023
       Arm_2   6 devLepkelekllalLkssedpliqeialltlgnsaaysvnq.diirdlggitiianllsksnaevkekalnalnnlsen.venqkkikvyvnqvck 100
                 ++v+++  l+ l +lL s +  +i + a  t++n  a  v q + + d g i+ + +ll + + + k+ a  a+ n s++  ++ + ik  v+q c 
  CCD25663.1 332 QTVINAGVLNALPNLLSSPK-ESIRKEACWTISNITAGNVEQiQAVLDAGLIPPLVKLLDTAEYKTKKEACWAISNASTGgLQRPEIIKYLVSQNCI 427
                 66677777778878776555.56888899999999999999867999***************************99998526888999999999885 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.12
       Arm_2  46 nqdiirdlggitiianllsksnaevkekalnaln 79 
                 n d+i++ gg+  i n+  ++n +++eka ++++
  CCD25663.1 470 NADLIEKAGGMEKIFNCQQNENDKIYEKAYSIIE 503
                 789**************************98876 PP

>> V-ATPase_H_C  V-ATPase subunit H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.31   3.4e+02      44     112 ..     129     197 ..     122     201 .. 0.80
   2 !    7.1   0.0    0.0049       5.5      42     112 ..     296     365 ..     286     370 .. 0.90
   3 !    9.1   0.2    0.0012       1.3      42     111 ..     425     504 ..     416     509 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.31
  V-ATPase_H_C  44 lkkLiklleeskdktvlav.alnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                   + +L+++++ ++++++l++ a+  ++++++  +e+ kv+ + +a    ++ll +   ev+ +A+ a+ ++
    CCD25663.1 129 VPTLVEFMQ-ENQPEMLQLeAAWALTNIASGSSEQTKVVVEAGAVPLFIQLLYTGSIEVQEQAIWALGNI 197
                   667888884.56665555536778999999999999999999999999999999999****999998765 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0049
  V-ATPase_H_C  42 kllkkLiklleeskdktvlavalnDigelvkllpegkkvleklkaKekimellehedeevkyeALkavqkl 112
                   ++ k+L++ll  ++++ v++ +l  +g++v+  + + +++ + ++ + + +ll+++ e++++eA  +++++
    CCD25663.1 296 RIPKRLVELL-VHQSTLVQTPCLRAVGNIVTGNDLQTQTVINAGVLNALPNLLSSPKESIRKEACWTISNI 365
                   6789******.4677888999999**********9*9***9***********************9999876 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.0012
  V-ATPase_H_C  42 kllkkLiklleeskdktvlavalnDigelvkl...........lpegkkvleklkaKekimellehedeevkyeALkavqk 111
                   + +k L++ll e +d+++l val  +++++k+           ++e  +++ek ++ eki+++ ++e++++  +A   +++
    CCD25663.1 425 NCIKPLCDLL-EIADNRILEVALEALENILKVgeadketrgltINENADLIEKAGGMEKIFNCQQNENDKIYEKAYSIIET 504
                   6799999999.58999999999999999999855444444444455666679*******************9999776665 PP

>> RICTOR_V  Rapamycin-insensitive companion of mTOR, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.18     2e+02       7      37 ..     149     180 ..     145     184 .. 0.77
   2 !   14.4   0.0   3.1e-05     0.034       5      53 ..     189     237 ..     187     244 .. 0.81
   3 ?   -1.7   0.0       3.2   3.6e+03      18      42 ..     287     311 ..     274     329 .. 0.55
   4 ?    1.9   0.0      0.24   2.7e+02       3      39 ..     355     392 ..     353     401 .. 0.79
   5 ?   -0.7   0.0       1.5   1.7e+03       3      17 ..     397     411 ..     395     439 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.18
    RICTOR_V   7 LWaiGhigsselGie.lldeydivedivelae 37 
                  Wa+ +i+s  +  + ++ e  +v+ +++l +
  CCD25663.1 149 AWALTNIASGSSEQTkVVVEAGAVPLFIQLLY 180
                 5********66555548888899999888876 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 3.1e-05
    RICTOR_V   5 aaLWaiGhigsselGie.lldeydivedivelaeespvlslRGtafyvLg 53 
                 +a+Wa+G+i+     ++ ++  ++++e i+ l++++++  +R ta + L+
  CCD25663.1 189 QAIWALGNIAGDSTDYRdFVLRCNAMEPILGLFNNTKTSLIR-TATWTLS 237
                 79*******985555555*******************99999.5555555 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 3.2
    RICTOR_V  18 lGie.lldeydivedivelaeespvl 42 
                 + i+ ++d   i +++vel  ++++l
  CCD25663.1 287 EAIQaVIDA-RIPKRLVELLVHQSTL 311
                 556633343.6666666665544433 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.24
    RICTOR_V   3 lKaaLWaiGhigs.selGie.lldeydivedivelaees 39 
                 +K a W+i +i +   + i+ +ld   +++ +v+l  ++
  CCD25663.1 355 RKEACWTISNITAgNVEQIQaVLDA-GLIPPLVKLLDTA 392
                 58999******99556778856666.9999999887665 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.5
    RICTOR_V   3 lKaaLWaiGhigsse 17 
                 +K a Wai +  +  
  CCD25663.1 397 KKEACWAISNASTGG 411
                 68999***9987743 PP

>> Adaptin_N  Adaptin N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.082        92     415     449 ..     128     165 ..     123     198 .. 0.75
   2 ?   -1.3   0.0      0.55   6.2e+02     315     342 ..     246     273 ..     241     295 .. 0.91
   3 !   13.4   0.2   1.9e-05     0.022      92     243 ..     309     490 ..     301     513 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.082
                 CHHHHCCTCCGXXSHHHHHHHHHHHHHTTTTXTT.... CS
   Adaptin_N 415 iiekLaellekieseearaaaiWllGeygelvsn...t 449
                 i+ +L+e++++ + e+++ +a+W l+ +++  s+    
  CCD25663.1 128 IVPTLVEFMQENQPEMLQLEAAWALTNIASGSSEqtkV 165
                 67889999999999999999999999999988873330 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.55
                 TSXHHHHHHHHHHHCCCXXTTTHHHHHH CS
   Adaptin_N 315 dddvsirlkaldlllklvdesNvkeivk 342
                 ++d si ++al +l kl+ +  v++iv+
  CCD25663.1 246 QPDWSIVSLALPVLAKLIYSLDVETIVD 273
                 6899999999999999999999999986 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 1.9e-05
                 SHHHHHHHHHHHCCC-.......-CCCHHHHHHHHHHHHT-SSHHHHHHHHHHHHHCCCCCHHCCC...CC.HHHHHHHCTT-SSHHHHHHHHHHHHHH CS
   Adaptin_N  92 nqlirglALrvLssir.......vpelaedlapaikkllkdrspyvrkkAalailklykkdpdllr...kq.lveeikellsdkdpgvvlaAvalleei 179
                 ++l++   Lr++++i        +  +   +++a+ +ll++++ ++rk+A  +i  +   + ++++   +  l++ +++ll+  +++ +  A  ++   
  CCD25663.1 309 STLVQTPCLRAVGNIVtgndlqtQTVINAGVLNALPNLLSSPKESIRKEACWTISNITAGNVEQIQavlDAgLIPPLVKLLDTAEYKTKKEACWAISNA 407
                 555566666666666643333212223466899*************************998877653337889************************** PP

                 ....HCCCCCCC.HHHHHHHCCHHHHHHCS-HHHHHHHHHHHCC---SSHHHH................HHHHHHHCGGCGCS CS
   Adaptin_N 180 ....kkndrlll.kllpklvrrLcnllteldpwlqvkiiklltrlarqepeer..............skkellesllnllqss 243
                      + +++ +  + +  ++ Lc+ll++ d+ +  + ++ l +  ++ ++++              +k+  +e++ n+ q+ 
  CCD25663.1 408 stggLQRPEIIKyLVSQNCIKPLCDLLEIADNRILEVALEALENILKVGEADKetrgltinenadliEKAGGMEKIFNCQQNE 490
                 9998455555454788888999*********************9999999999444444443333332244444444444454 PP

>> NopRA1  Nucleolar pre-ribosomal-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.7     3e+03     108     142 ..     129     161 ..     123     168 .. 0.76
   2 !    8.6   0.0    0.0011       1.2     105     165 ..     169     224 ..     162     270 .. 0.84
   3 ?   -0.1   0.0      0.54     6e+02       8      27 ..     347     366 ..     342     374 .. 0.84
   4 ?    0.6   0.0      0.32   3.6e+02     103     188 ..     377     458 ..     366     462 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.7
      NopRA1 108 vPlfysllyssseedeeykkersWiLrlladGlrt 142
                 vP + +++++++ e    + e +W L+ +a G  +
  CCD25663.1 129 VPTLVEFMQENQPE--MLQLEAAWALTNIASGSSE 161
                 77777777777776..7888999999999988665 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0011
      NopRA1 105 lndvPlfysllyssseedeeykkersWiLrlladGlrtksDlk.llkrrrvfelllslynsp 165
                    vPlf +lly+ s e   ++++  W L  +a    +++D++    r +++e +l l+n++
  CCD25663.1 169 AGAVPLFIQLLYTGSIE---VQEQAIWALGNIA---GDSTDYRdFVLRCNAMEPILGLFNNT 224
                 678**************...*********9998...56667765566778*********983 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.54
      NopRA1   8 LssedeeirrlAlavlskll 27 
                 Lss +e+ir+ A  ++s++ 
  CCD25663.1 347 LSSPKESIRKEACWTISNIT 366
                 89999999999998888765 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.32
      NopRA1 103 ldlndvPlfysllyssseedeeykkersWiLrll.adGlrtksDlkllkrrrvfelllslynsplldaklrelilelllratriegg 188
                 ld   +P + +ll +++ +    kke  W +    + Gl+ ++ +k l ++++++ l+ l +   +d+++ e  le l ++ ++ ++
  CCD25663.1 377 LDAGLIPPLVKLLDTAEYK---TKKEACWAISNAsTGGLQRPEIIKYLVSQNCIKPLCDLLEI--ADNRILEVALEALENILKVGEA 458
                 6666778888888888888...99999998876614578899999999999999999999997..9999999999999999988655 PP

>> O-FucT  GDP-fucose protein O-fucosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   4.9e-05     0.055     172     242 ..       5      78 ..       2     118 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.9e-05
      O-FucT 172 elaaklvkrllekrkakggpylalHLRrekDflaaCehgggee.ellaspre..........srreegk..ltpeecvpsleei 242
                 + a+k+v +++ ++++++g++ a  LRr++D ++  e  + ++ e la+ r+          +  e+++  + +++        
  CCD25663.1   5 DSANKFVPEYRRTNFKNKGRFSAEELRRRRDTQQ-VELRKAKRdETLAKRRNfnaatdvdseD--EDETntVGEQQ-------F 78 
                 679*******************************.3333344479999999987776654320..22221233333.......2 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.42   4.7e+02      58     116 ..     132     189 ..      84     205 .. 0.62
   2 ?   -0.7   0.0       1.1   1.2e+03      69     116 ..     249     315 ..     243     338 .. 0.62
   3 ?    2.0   0.0      0.16   1.8e+02      64     118 ..     307     359 ..     292     368 .. 0.83
   4 ?    7.9   0.0    0.0024       2.7      51     131 ..     423     512 ..     419     525 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.42
     DUF3361  58 iasivnksaadasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtn 116
                  +++++++ + + ++ ++   L +i+  sse+ ++v ++  ++  i+ L + + e+q +
  CCD25663.1 132 LVEFMQEN-QPEMLQLEAAWALTNIASGSSEQTKVVVEAGAVPLFIQLLYTGSIEVQEQ 189
                 33333333.22333334444455555555555555555555555555555555555555 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.1
     DUF3361  69 asilqrslaiLesivlnss...................elyelvekevtlesLiehLqssnqeiqtn 116
                  si+  +l +L +++ + +                   e  + v ++   ++L+e L ++++ +qt 
  CCD25663.1 249 WSIVSLALPVLAKLIYSLDvetivdaswaisylsdgppEAIQAVIDARIPKRLVELLVHQSTLVQTP 315
                 5666666666666666655444555555555555555455666666666677777776666666665 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.16
     DUF3361  64 ksaadasilqrslaiLesivlnsselyelvekevtlesLiehLqssnqeiqtnal 118
                 ++   + ++ ++l  + +iv+ ++ + ++v ++  l+ L + L+s+++ i ++a 
  CCD25663.1 307 HQ--STLVQTPCLRAVGNIVTGNDLQTQTVINAGVLNALPNLLSSPKESIRKEAC 359
                 33..6778899**********9999999999999999999999999999988775 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0024
     DUF3361  51 sdeFikkiasivnksaadasilqrslaiLesivlnss...........elyelvekevtlesLiehLqssnqeiqtnalaLlnALllkadds 131
                 s+++ik  ++ ++    d++il+ +l+ Le+i    +           e+ +l+ek+  +e++ +  q++n++i  +a +++ + + + +d+
  CCD25663.1 423 SQNCIKPLCDLLEIA--DNRILEVALEALENILKVGEadketrgltinENADLIEKAGGMEKIFNCQQNENDKIYEKAYSIIETYFGEDEDA 512
                 677788888888777..9**************999888899999998777999999999*********************999988766655 PP

>> HEAT_PBS  PBS lyase HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.31   3.5e+02       2      14 ..     145     157 ..     144     179 .. 0.72
   2 ?    6.3   0.0     0.017        19       1      14 [.     186     199 ..     186     207 .. 0.88
   3 ?    0.7   0.0       1.1   1.2e+03       5      23 ..     274     294 ..     272     295 .. 0.84
   4 ?   -1.8   0.1       6.9   7.7e+03      15      24 ..     443     452 ..     424     454 .. 0.64

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.31
                 HHHHHHHHHHCTS CS
    HEAT_PBS   2 RraAakaLgqlgd 14 
                 + +Aa+aL ++ +
  CCD25663.1 145 QLEAAWALTNIAS 157
                 679*****99987 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHCTS CS
    HEAT_PBS   1 vRraAakaLgqlgd 14 
                 v+  A++aLg++  
  CCD25663.1 186 VQEQAIWALGNIAG 199
                 7899*******975 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 1.1
                 HHHHHHHCTS..GGGHHHHHH CS
    HEAT_PBS   5 AakaLgqlgd..eeaipaLle 23 
                 A +a+  l d  +eai+a + 
  CCD25663.1 274 ASWAISYLSDgpPEAIQAVID 294
                 679999999999****99776 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 6.9
                 GGGHHHHHHH CS
    HEAT_PBS  15 eeaipaLlea 24 
                 e a++aL + 
  CCD25663.1 443 EVALEALENI 452
                 5566676665 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.4       0.9     1e+03     247     331 ..      31      76 ..      22      85 .. 0.39
   2 ?   10.9   0.9   0.00012      0.14      14      99 ..      77     164 ..      69     186 .. 0.88
   3 ?   -0.3   0.0      0.31   3.4e+02     109     126 ..     416     433 ..     367     496 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.9
        SAPS 247 vkerDevrerlleeltseeealedvsdeaskeesaesedltdkdedvsleesksakdenkesdesesdtaeesseededdassee 331
                  ++rD++  +l++ ++                                      ++ +  ++ + ++ t+ +s++ede+++  e+
  CCD25663.1  31 RRRRDTQQVELRKAKR--------------------------------------DE-TLAKRRNFNAATDVDSEDEDETNTVGEQ 76 
                 4444444444443331......................................11.1222233333333333333333333333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00012
        SAPS  14 eFiksqenivekflkhidtpaimdlLlkiIstekt..esgtgiiewlksqdLisklldlLspeesediqssasdfLkaiItisanata 99 
                 +F+ + ++ +++++++i +  ++d L   +++ +         i+++ ++ ++++l+++++++++e  q  a+  L +i + s+++t+
  CCD25663.1  77 QFMTQLQQELPRMVEQIHSNDMQDQLSATVKFRQIlsREHSPPIDIVIQTGIVPTLVEFMQENQPEMLQLEAAWALTNIASGSSEQTK 164
                 5888999999************************9776677789************************************99999986 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.31
        SAPS 109 eLtreLvseeivekLiki 126
                 e+++ Lvs+++++ L++ 
  CCD25663.1 416 EIIKYLVSQNCIKPLCDL 433
                 556667777777766654 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.2      0.01        12      25      46 ..      76      97 ..      75     102 .. 0.93
   2 ?    3.1   0.4     0.073        82      36      52 ..     130     146 ..     129     147 .. 0.93

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.01
  XPC-binding 25 qplLqqlaqsnPqllqlIqqnq 46
                 q+++ ql+q+ P+++++I++n 
   CCD25663.1 76 QQFMTQLQQELPRMVEQIHSND 97
                 799****************995 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.073
  XPC-binding  36 PqllqlIqqnqeeFlql 52 
                  P l++ +q+nq e+lql
   CCD25663.1 130 PTLVEFMQENQPEMLQL 146
                  899**********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1206  (0.0672653); expected 358.6 (0.02)
Passed bias filter:                      706  (0.0393775); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 3572.41
//
Query:       CCD25664.1  [L=201]
Description: hypothetical protein NDAI_0F03460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1370  (0.0764125); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 1454.48
//
Query:       CCD25665.1  [L=359]
Description: hypothetical protein NDAI_0F03470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-11   41.1   0.0    2.5e-09   36.5   0.0    2.1  2  GATase_4        Glutamine amidotransferases class-II
      1e-08   35.5   0.0      2e-08   34.5   0.0    1.4  1  GATase_6        Glutamine amidotransferase domain
  ------ inclusion threshold ------
      0.044   13.3   0.0      0.064   12.8   0.0    1.4  1  PS_Dcarbxylase  Phosphatidylserine decarboxylase
       0.15   12.0   0.0       0.98    9.3   0.0    2.0  2  GATase_7        Glutamine amidotransferase domain


Domain annotation for each model (and alignments):
>> GATase_4  Glutamine amidotransferases class-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   5.5e-13   2.5e-09       4     116 ..      18     129 ..      15     140 .. 0.79
   2 ?    2.4   0.0     0.013        59     217     250 ..     261     295 ..     256     310 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 5.5e-13
    GATase_4   4 LLgmssnvptdisfsftgfaarggltdahadGwGiafye......gkaarvfkdpepsaesplaelvreypiksknvvaHiRkatqGevklenthpFvR 96 
                 LL+  ++ +++ sf+ +   +r+       dG+G+a+y+      + +  +fk  +p+ + +    + + + ks +v aH+R  t G  ++ n+hpF+ 
  CCD25665.1  18 LLTKPAHSIINQSFDSRLRLDRRRP--INGDGFGVAYYPmedelnDDGPCLFKAITPAWNNQNLSTLAD-KTKSDLVFAHVRASTYGVLSETNCHPFTY 113
                 5555566666666665544444433..478**********9999999999********98876666655.69*************************85 PP

    GATase_4  97 elwgrewifAHnGdlkeykp 116
                      +  f HnG ++++k+
  CCD25665.1 114 ----HSLCFMHNGGISNFKH 129
                 ....5799*******99876 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.013
    GATase_4 217 ttkedrvavvatepLt.rdetWkklepGellvfrd 250
                  ++++ v +va+epLt +  +W +++  ++l++++
  CCD25665.1 261 LDRNQDVIMVASEPLTfERGDWIAVPTNSILTIKK 295
                 56788999********76679*9999888887776 PP

>> GATase_6  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   4.5e-12     2e-08       5      62 ..      81     136 ..      77     142 .. 0.88

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 4.5e-12
    GATase_6   5 glaslvedevalaHvRlaivglaeeega.qPfpsedgrlllvhNGeiynykelreelpa 62 
                 +la+ +++++++aHvR ++ g   +e++ +Pf  ++  l ++hNG i+n+k+++++l +
  CCD25665.1  81 TLADKTKSDLVFAHVRASTYGVL-SETNcHPF--TYHSLCFMHNGGISNFKHIKRRLLN 136
                 566778889*************7.77777***..********************99976 PP

>> PS_Dcarbxylase  Phosphatidylserine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.4e-05     0.064      69     179 ..     100     255 ..       7     273 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.4e-05
  PS_Dcarbxylase  69 ngyfvviyLspgdyHryhaPvsgkveerrhipGells.vnpsalkelrglftlneRvvlview...........kGkvavvpvGatnvgsivln. 150
                      g++  +   p+ yH   +  +g + +++hi+ +ll+ ++  +l+  + +  ln R +l +++            G++  ++   ++ ++i++  
      CCD25665.1 100 YGVLSETNCHPFTYHSLCFMHNGGISNFKHIKRRLLNhIKDEYLNFYKVVQILNVRFALFLDTldkngfdpskrDGNFGHIALRKALLQTIEYIr 194
                     5666667778************************98878999999999**************667888888887788999999999999998888 PP

  PS_Dcarbxylase 151 ...............................vlkgdelkkGeelGyFqf..GStvvlvfeag 179
                                                    v      +k +e   ++f  GS++v  f+ +
      CCD25665.1 195 dwtkevnesngmetvepsllnfavtdgstviV-SRYITSKTDEAASLHFscGSSFVETFPGE 255
                     88899998888888888888888888888854.44455555555544444488888888866 PP

>> GATase_7  Glutamine amidotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00022      0.98       2      44 ..      95     136 ..      94     142 .. 0.84
   2 ?   -0.1   0.0      0.19   8.4e+02      65      95 ..     243     273 ..     215     278 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00022
    GATase_7   2 rrlsi..idseagaQPmvssedgrlvivfnGeiyNykelreeLea 44 
                  r s+  ++se++  P++    ++l++++nG i N+k+++++L +
  CCD25665.1  95 VRASTygVLSETNCHPFTY---HSLCFMHNGGISNFKHIKRRLLN 136
                 6666667889999999994...799****************9975 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.19
    GATase_7  65 ewgeealerlnGmfAfaiwdeeekrlllaRD 95 
                   g +++e + G++ +  +d++++ +++a +
  CCD25665.1 243 SCGSSFVETFPGEYRMERLDRNQDVIMVASE 273
                 5799999999999999999999988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2687.63
//
Query:       CCD25666.1  [L=1139]
Description: hypothetical protein NDAI_0F03480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-68  228.8   0.4    3.3e-68  228.8   0.4    2.1  3  Chitin_synth_1   Chitin synthase
    1.3e-25   89.2   0.1    3.1e-25   87.9   0.1    1.7  1  Chitin_synth_1N  Chitin synthase N-terminal
    3.1e-21   75.6   0.5    1.2e-14   53.9   0.0    2.4  2  Chitin_synth_2   Chitin synthase
    8.9e-11   42.1   9.1      5e-10   39.6   9.1    2.2  1  Glyco_trans_2_3  Glycosyl transferase family group 2
    0.00081   19.3   0.0     0.0017   18.3   0.0    1.5  1  Glyco_tranf_2_3  Glycosyltransferase like family 2
  ------ inclusion threshold ------
      0.014   15.2   0.0        2.3    8.0   0.0    2.5  2  Glycos_transf_2  Glycosyl transferase family 2
       0.15   11.5   0.0        1.7    8.1   0.0    2.3  2  Glyco_transf_21  Glycosyl transferase family 21


Domain annotation for each model (and alignments):
>> Chitin_synth_1  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.7       3.8   9.8e+03      69     104 ..      12      47 ..      11      56 .. 0.73
   2 ?   -3.2   0.1       2.8   7.3e+03      57     100 ..     215     259 ..     211     283 .. 0.63
   3 !  228.8   0.4   1.3e-71   3.3e-68       1     163 []     464     630 ..     464     630 .. 0.94

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.8
  Chitin_synth_1  69 gvakkkvngkevkahlfeyttqlsvdeelklkenek 104
                     g+ +++ n  ++++ +++  t+++ ++   ++e+++
      CCD25666.1  12 GYYQHDQNTPTRNQDIYNTDTSYQPNQAYGYEEHDQ 47 
                     567778888999999999999999988655555553 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.8
  Chitin_synth_1  57 ldvlaalgvyqegvakkkvngkevkahlf.eyttqlsvdeelklk 100
                     +++ ++++ ++e+++ k + +++ ++ +  +   q++ +++++ +
      CCD25666.1 215 VSMNSSIDNFDENLTSKPILQQQQNQYILnDDPLQYHYQQQQNPS 259
                     667788889998888888877666666541445666665544333 PP

  == domain 3  score: 228.8 bits;  conditional E-value: 1.3e-71
  Chitin_synth_1   1 mynEdkellarTLkgvmkNieelkkrkkskvwgkdsWkkivVcivsDGrekideetldvlaalgvyqegvakkkvngkevkahlfeyttqlsvde 95 
                     mynEd++ll rTLkgvm+N++ ++k+++s++wg+d+WkkivVc+vsDGr+ki+++ l+++++lg+yq+g+ak+++n+++v++h++e+tt++++++
      CCD25666.1 464 MYNEDHILLGRTLKGVMDNVKCMVKKTHSSTWGPDAWKKIVVCVVSDGRSKINPKSLALMSSLGCYQDGFAKDEINDEKVQMHVYEHTTMCNITN 558
                     9********************************************************************************************66 PP

  Chitin_synth_1  96 .....elklkenekslvpvqllfclkeknakkinShrWlfnafarllqPevcvlldvGtkpgkkslyklwkaf 163
                           ++l+ n +s+vp+ql+fclke+n+kkinShrW+f++fa+llqP+v++lld+Gt+pgk+s+y+lw++f
      CCD25666.1 559 vnsetGIDLECN-SSTVPIQLMFCLKEQNQKKINSHRWAFEGFAELLQPNVVTLLDAGTMPGKDSIYQLWREF 630
                     333333444444.59*******************************************************998 PP

>> Chitin_synth_1N  Chitin synthase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.1   1.2e-28   3.1e-25       2      73 .]     389     463 ..     388     463 .. 0.96

  Alignments for each domain:
  == domain 1  score: 87.9 bits;  conditional E-value: 1.2e-28
  Chitin_synth_1N   2 kkvkLlngnlvldlpvpkkllkalpeee.keseEfthmRYtAvTcdPddftkegytLRqalyg..ReteLlIviT 73 
                      +++kL+ngn+++d p++k+l++++++++ + s+Ef++mRY+AvTc+P+++ ++++t+Rq +y   R teL+IviT
       CCD25666.1 389 RRFKLWNGNFIFDSPISKTLISRYSTAQdSLSNEFKFMRYQAVTCEPNHLLQKNFTVRQLKYLtpRPTELFIVIT 463
                      799**********************776578*******************************999*********9 PP

>> Chitin_synth_2  Chitin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   4.6e-18   1.2e-14     204     375 ..     608     776 ..     595     787 .. 0.82
   2 !   18.8   0.8     2e-07   0.00051     436     513 ..     927    1004 ..     879    1018 .. 0.78

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 4.6e-18
  Chitin_synth_2 204 ivlmvdadtkvapdsltrlvaalvkdpeilglcGetkiankke.....swvtaiqvfeyyishhlskafesvfGsvtclPGcfslyrikaakgad 293
                     +v ++da t    ds+ +l  ++ + p++ g cGe k +  k+       + a q fey +s  l k+ es fG +t lPG fs+yr  a +g  
      CCD25666.1 608 VVTLLDAGTMPGKDSIYQLWREF-RSPNVGGACGEIKADLGKNftkllNPLVASQNFEYKMSNILDKTTESNFGFITVLPGAFSAYRFDAVRG-- 699
                     5678899999999**99999887.56899******9987444311111335688*************************************99.. PP

  Chitin_synth_2 294 gkwvPilvspeiveeysenvvdtlhkknllllGedrylt.tlllktfpkrktvfvpqakcktvaPdtfkvllsqrrrwinstv 375
                     + ++  +       e  e++   +   n ++l edr l   ++ k++++   ++ ++a + t +P+t   ++ qrrrw+n ++
      CCD25666.1 700 EPLQKYFYG-----ETVESEGTHFFSSN-MYLAEDRILCfEIVTKKHSNWVLKYSKSAFASTDVPETIPEFILQRRRWLNGSL 776
                     434444433.....33344444555566.689*****9846999************************************875 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 2e-07
  Chitin_synth_2  436 vllaivlGlpailivltarkleyvawllvyllalPifnfvlPlyafwhlddfswGetrvveGekkkkaageaegefds 513 
                      + +a  + l  +  ++  + +++++ ++ yll  P +  vl +yaf ++ d swG    v+ +   k +++++g+f+ 
      CCD25666.1  927 ISMASTYALYLLSSIVYLQPWHMLTSFVQYLLFSPSYINVLTIYAFCNVHDISWGTKGAVAQKPLGKINTKEDGTFQM 1004
                      33445555555555555568************************************9999999988899999999976 PP

>> Glyco_trans_2_3  Glycosyl transferase family group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   9.1     2e-13     5e-10       1     194 [.     608     835 ..     608     974 .. 0.81

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 2e-13
  Glyco_trans_2_3   1 iilllDaDtvlppdclreiaaelaspevaivqgpvlvmnvanwleelaalf......faedhgkdilvrealgrvvpsvGsgaflrrsalq... 85 
                      +++llDa t++  d+++++ +e++sp+v+ ++g + ++ ++n++  l+ l       ++ + + d    +++g  + ++G+ ++ r +a++   
       CCD25666.1 608 VVTLLDAGTMPGKDSIYQLWREFRSPNVGGACGEIKADLGKNFTKLLNPLVasqnfeYKMSNILDKTTESNFGFITVLPGAFSAYRFDAVRgep 701
                      699**********************************95555554444444344544999********************************99 PP

  Glyco_trans_2_3  86 .........evg.....gwdgdessvsEDfdmglrlqrkG...yrvrfvpeslvkekspltlraalrQrkRwayGc...el.....eklillvr 154
                                       +++ ++  ++ED  +++ + +k    +++ +  +++  + +p t+  ++ Qr+Rw+ G    ++     +++i +++
       CCD25666.1 702 lqkyfygetV-EsegthFFS-SNMYLAEDRILCFEIVTKKhsnWVLKYSKSAFASTDVPETIPEFILQRRRWLNGSlfaSIysfchFYRI-WTS 792
                      9999999750.255677888.6699***********9888665666666666889********************766522565543333.555 PP

  Glyco_trans_2_3 155 llgylgsllwsa.lplhl..allllfsllalalvlllllllaa 194
                       +   ++ll++  +  ++  +l+ +fsl+++ lv+ +l+l +a
       CCD25666.1 793 GHNIGRKLLLNFeFIYLFfnTLMSWFSLSSFFLVFRILTLSIA 835
                      6666666665443333331134444444444444444444433 PP

>> Glyco_tranf_2_3  Glycosyltransferase like family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.5e-07    0.0017      68     229 ..     586     773 ..     573     774 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 6.5e-07
  Glyco_tranf_2_3  68 rnlgstgksralnealravksdlvllvDdDtvvePdtlkrllqffltpkvgavgtpvfllnrstl......vsalgalefaerhlrflaarral 155
                      ++  +++ ++a ++  +  ++ +v+l+D+ t  ++d++ +l + f++p+vg + +   ++ ++++      + a++++e++  ++    +   +
       CCD25666.1 586 NQKKINSHRWAFEGFAELLQPNVVTLLDAGTMPGKDSIYQLWREFRSPNVGGACGEIKADLGKNFtkllnpLVASQNFEYKMSNILDKTTESNF 679
                      444677888888888888999**************************************99997755555566669999999999888888999 PP

  Glyco_tranf_2_3 156 gvltln.Gsgslirrevlkele.............gldp...lflltdDyelglrlrr...agfrtayvpgaavrevfpsslkayikqrnRwvy 229
                      g++t+  G++s++r + ++                g+++   + +l++D +l++++      ++  +y + a+  +  p+++ ++i qr+Rw+ 
       CCD25666.1 680 GFITVLpGAFSAYRFDAVRGEPlqkyfygetveseGTHFfssNMYLAEDRILCFEIVTkkhSNWVLKYSKSAFASTDVPETIPEFILQRRRWLN 773
                      98555549**********977779***********444445689999********988777889999*************************86 PP

>> Glycos_transf_2  Glycosyl transferase family 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.011        28       2      38 ..     460     512 ..     459     525 .. 0.87
   2 ?    8.0   0.0   0.00089       2.3      78     166 ..     604     697 ..     582     699 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.011
                      EEEEESS-.TTTHHHHHHHHHHH...............GGCCEEEEEEEEES- CS
  Glycos_transf_2   2 vviptyNe.ektlletlesllaq...............dpypdfeiivvDDgS 38 
                      +vi++yNe   +l +tl+ + ++               d ++++ ++vv Dg 
       CCD25666.1 460 IVITMYNEdHILLGRTLKGVMDNvkcmvkkthsstwgpDAWKKIVVCVVSDGR 512
                      8*******8888999999999999999*********999999*******9994 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00089
                      --SSEEEEEESSEEE-TTHHHHHHHHHHH.TTCEEEEEEEEEECCCCCCCHC-SS.....EEEECCHCC.CCHCCCCCCSTTCSTCCCEEEEHH CS
  Glycos_transf_2  78 atgdyilflDaDdepdpdwleklvealekdgadvvlgqrprifgetdeiernkrv.....generlyfk.erkrslkgnlsfeigsaallrrea 165
                       + +++++lDa + p +d + +l +++  +++++++g + +  g+++++  n  v     +   + ++  ++  s +g +++  g ++++r++a
       CCD25666.1 604 LQPNVVTLLDAGTMPGKDSIYQLWREFRSPNVGGACGEIKADLGKNFTKLLNPLVasqnfE-YKMSNILdKTTESNFGFITVLPGAFSAYRFDA 696
                      45569*********************************************99999988641.22222220222333445667777788888776 PP

                      H CS
  Glycos_transf_2 166 l 166
                      +
       CCD25666.1 697 V 697
                      5 PP

>> Glyco_transf_21  Glycosyl transferase family 21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00067       1.7      26      79 ..     600     654 ..     581     698 .. 0.64
   2 ?    0.4   0.0      0.15     4e+02     123     172 ..     722     772 ..     711     773 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00067
  Glyco_transf_21  26 lea.akydllvisDsdvrvkpdyLeellaaledpkvglVtslpvgsdakglaaal 79 
                      +++  + ++++++D+ ++  +d + +l +++++p+vg  ++ + +   k++++ l
       CCD25666.1 600 FAElLQPNVVTLLDAGTMPGKDSIYQLWREFRSPNVGGACGEIKADLGKNFTKLL 654
                      444678899****************************999855544444444333 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.15
  Glyco_transf_21 123 adeLAeDyalg.kllraa..GlkvvlspapiaqtsvprrsslrallaRqlrWa 172
                        +LAeD  l  ++++++  ++ +  s+ ++a+t+vp+  ++ ++  +  rW 
       CCD25666.1 722 NMYLAEDRILCfEIVTKKhsNWVLKYSKSAFASTDVPE--TIPEFILQRRRWL 772
                      679****9999788888767889999999*******96..8899988888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1139 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1049  (0.0585086); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 7337.72
//
Query:       CCD25667.1  [L=520]
Description: hypothetical protein NDAI_0F03490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.027   14.8   2.7       0.95    9.8   0.0    3.8  4  MapZ_C2   MapZ extracellular C-terminal domain 2


Domain annotation for each model (and alignments):
>> MapZ_C2  MapZ extracellular C-terminal domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.048   8.6e+02      36      72 ..      21      57 ..      11      73 .. 0.73
   2 ?   -1.2   0.0      0.14   2.5e+03      51      62 ..      95     106 ..      86     118 .. 0.78
   3 ?    9.8   0.0   5.3e-05      0.95       7      48 ..     247     288 ..     242     318 .. 0.90
   4 ?    1.0   0.1      0.03   5.4e+02      12      42 ..     470     499 ..     459     518 .. 0.63

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.048
     MapZ_C2 36 GyiveggyilervriengegyYnlyatdnksklglse 72
                  i++++y++e  ++e+    + l   +++ ++ +++
  CCD25667.1 21 QPITQDDYYIEATELEEQAERWQLSDLKKTLRFYIKA 57
                56999******99999988777777666665555444 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.14
     MapZ_C2  51 engegyYnlyat 62 
                 +n +gy n++  
  CCD25667.1  95 TNNNGYINVFDF 106
                 789999999975 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 5.3e-05
     MapZ_C2   7 esdvadssnpawtwapgvkekviatsierGyiveggyilerv 48 
                 +++++++  +a+++a+ v+e++++++ +     +++yil+ v
  CCD25667.1 247 TTTIQEVFVNAYKFAETVLETILQNASNTINEIQKNYILDTV 288
                 6778999999****************9999999999999877 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.03
     MapZ_C2  12 dssnpawtwapgvkekviatsierGyivegg 42 
                  +s +  + + g++e++i++ i+r yi ++ 
  CCD25667.1 470 TNSTNMSQIQCGLQETIIDK-IKRNYIYQQS 499
                 4444556778899***9987.7899998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1339  (0.0746835); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3598.30
//
Query:       CCD25668.1  [L=357]
Description: hypothetical protein NDAI_0F03500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-36  123.7  13.3    1.1e-35  123.2  13.3    1.2  1  SUR7      SUR7/PalI family
  ------ inclusion threshold ------
      0.057   14.0   0.2      0.093   13.3   0.2    1.3  1  Pyocin_S  S-type Pyocin
       0.55   10.1   6.4          1    9.2   6.4    1.4  1  Fig1      Ca2+ regulator and membrane fusion protein Fig1
        0.9    9.9   0.0        0.9    9.9   0.0    3.5  4  TadE      TadE-like protein


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.2  13.3   2.5e-39   1.1e-35       2     210 ..       8     206 ..       7     208 .. 0.95

  Alignments for each domain:
  == domain 1  score: 123.2 bits;  conditional E-value: 2.5e-39
        SUR7   2 rlillflslaalilllfailgsiknstpltsiylskfdlsgldlaqigladvysfgvwgyC..dnsdvnytkCskpkagypfdpleelnsesngkvdlP 98 
                 +++ lf++l+a +l++f il++ +++ +l+++y++++ ++ ++ +     +++++  + yC  +   ++  +Cs++ a+ pf+pl++++s+      +P
  CCD25668.1   8 QFLHLFFLLGAGLLVFFLILSGARETGVLKHFYWFQATTYLMTDE----GNMTRWYNYRYCslSWFANQPINCSPSAAATPFSPLDNFGSTRY----IP 98 
                 6789************************************77777....79**********888889999*********************99....** PP

        SUR7  99 snlrktlsklnnltkalfilhiialvlsfislvvgllaicvspdnsrllsflnlllsvlsflatllaalldtllfvfvrkkinlkefgikaslglkfla 197
                 s++ + ++++++l+++++++++i+l+l + +++++++ ++      r++s ++ ++ +lsf+++ll+a+l+t++++++++++  +++g+ a lg + ++
  CCD25668.1  99 SSFVDHRDTYYYLSRVGWAMLLISLFLIISTIILSIVRLF--MMRDRIVSRMTVVFHWLSFFFILLTACLYTGCYAKAKNVF--NNAGRAARLGPNNFG 193
                 ***************************************9..5666678*********************************..9************** PP

        SUR7 198 faWlalaaallvv 210
                 f+W++++++ll++
  CCD25668.1 194 FLWTSVFLLLLTS 206
                 *********9976 PP

>> Pyocin_S  S-type Pyocin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   2.1e-05     0.093      60     128 ..     269     341 ..     229     346 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.1e-05
                 ..........CS-TTC--EECCEESS-SSS-TT-TTEES-SEEC..........-EC-STTTTTTEEEEEEE-- CS
    Pyocin_S  60 tadgspgvtilwtpaaaplssssttshpaappslpvitgtpipeeqgen.....ietlPaleerdfnDfIivfP 128
                 ta+g++++ ++++ + ++++ +  +s+ ++++++ +++g+++ +  +++       ++P  ee++++D+Ii++P
  CCD25668.1 269 TAAGTASGNVILSNS-NQANDNEPNSNVQVQKEVTNVEGNNLISIPEQQilstpGYAYPVEEEEEVDDVIITDP 341
                 455555555555444.444788888999999999999999877666666332334468889************* PP

>> Fig1  Ca2+ regulator and membrane fusion protein Fig1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   6.4   0.00023         1      88     180 ..     119     207 ..     108     214 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00023
        Fig1  88 LtlllfllllyfplgseipllPfkskavskvalvlsflllllwlvgalwqhvassaastlveeasmgivkskvGkkaealgWfafaflllvcl 180
                 L + lfl+++++   s++ l+ +  + vs++++v+ +l+++++l++a + + +   a+++ ++a      +  G    ++ W+++++lll+  
  CCD25668.1 119 LLISLFLIISTI-ILSIVRLFMMRDRIVSRMTVVFHWLSFFFILLTACLYTGCYAKAKNVFNNAGR---AARLGPNNFGFLWTSVFLLLLTSY 207
                 444455555554.378999**********************9999998877777766666666655...367899999999999999988765 PP

>> TadE  TadE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.5      0.56   2.5e+03      13      29 ..      12      28 ..       8      33 .. 0.70
   2 ?   -1.7   1.7      0.84   3.8e+03       9      30 ..     119     140 ..     116     145 .. 0.65
   3 ?    9.9   0.0    0.0002       0.9      12      41 ..     156     185 ..     154     186 .. 0.89
   4 ?   -1.8   0.5      0.87   3.9e+03       9      19 ..     195     205 ..     195     212 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.56
        TadE 13 lllllllgiiefgryly 29
                l++ll +g++ f ++l+
  CCD25668.1 12 LFFLLGAGLLVFFLILS 28
                67777777777766664 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.84
        TadE   9 LvlPlllllllgiiefgrylya 30 
                 L++ l+l++ + i+ + r+++ 
  CCD25668.1 119 LLISLFLIISTIILSIVRLFMM 140
                 4555677777777777777765 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0002
        TadE  12 PlllllllgiiefgrylyarqtlnnAArea 41 
                   +++ll+++++ g y+ a+++ nnA r+a
  CCD25668.1 156 SFFFILLTACLYTGCYAKAKNVFNNAGRAA 185
                 56899*********************9976 PP

  == domain 4  score: -1.8 bits;  conditional E-value: 0.87
        TadE   9 LvlPlllllll 19 
                 L+  ++llll+
  CCD25668.1 195 LWTSVFLLLLT 205
                 67778999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       982  (0.0547716); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2506.53
//
Query:       CCD25669.1  [L=204]
Description: hypothetical protein NDAI_0F03510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.092   13.2   0.6       0.13   12.7   0.6    1.2  1  MGC-24    Multi-glycosylated core protein 24 (MGC-24), sialom


Domain annotation for each model (and alignments):
>> MGC-24  Multi-glycosylated core protein 24 (MGC-24), sialomucin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.6   7.5e-06      0.13      31      98 ..      72     140 ..      55     149 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.5e-06
      MGC-24  31 kskcsenstvedCsvvnvtelcsaaskstpkptnstaktttkpsstttstsva.tsgttnttvtptsqp 98 
                 ++++ en+  ++C+ +++ ++ +  ++s p +   +ak+++ +  + +s++++ t+g++nt  + +s+ 
  CCD25669.1  72 EAQMNENTIPAGCQDTSMKSFSPQIEQSIPGAGCPMAKPHHIEPWSNPSQATTaTKGNSNTCDMIESNL 140
                 45566677779***************************9987665555554444*******98888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      304  (0.0169558); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1460.29
//
Query:       CCD25670.1  [L=211]
Description: hypothetical protein NDAI_0F03520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.43   11.5   7.7       0.59   11.0   3.3    2.1  2  CDC37_N      Cdc37 N terminal kinase binding
        4.3    7.0  10.1          7    6.3   5.1    2.1  2  N6_N4_Mtase  DNA methylase


Domain annotation for each model (and alignments):
>> CDC37_N  Cdc37 N terminal kinase binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.3   6.6e-05      0.59      33      97 ..       2      67 ..       1      97 [. 0.80
   2 ?    2.7   0.1     0.025   2.3e+02      50      79 ..     152     181 ..     135     197 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6.6e-05
     CDC37_N 33 Kqrdihekreqrkaeikklklereindkllkridkllealkekevee.eevvfkalnesleekkek 97
                Kq+ +++kr  r++  k+ + e++i+++ l+ i++  ++ +++++++ +e  fk++ + ++++k++
  CCD25670.1  2 KQELVKNKRRSRRQSTKDNTNENKIENTSLNTINNNNNNNNNSKKKKkTEFQFKVIPKPTKSPKKS 67
                99************************9999999998877655554443788888888877555544 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.025
     CDC37_N  50 klklereindkllkridkllealkekevee 79 
                  l  e ++++++lk i++l ea +e++ + 
  CCD25670.1 152 VLAFEDNYDKNVLKTIQDLQEAYTEQKRHG 181
                 467788899999999999999987776554 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.1   0.00078         7     131     190 ..       9      73 ..       1      80 [. 0.53
   2 ?    4.2   0.2    0.0033        29      99     152 ..     146     198 ..      77     211 .] 0.76

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00078
                  HHHHHHHHCHHHCC-B--BSEEE-SCCCTTSTTS-CHH.......----.SS---HHHHHHHHHHHS- CS
  N6_N4_Mtase 131 dklekrgaytskkkgkkiediWdlseiqsnekkskgdt.......kkkH.paqkPvallerlIklstk 190
                  +++++r+ ++ ++++ kie+   l+ i++n++++++ +       +  +  ++kP++ +++ +++ t+
   CCD25670.1   9 KRRSRRQSTKDNTNENKIENTS-LNTINNNNNNNNNSKkkkktefQ--FkVIPKPTKSPKKSVECGTQ 73 
                  2222222233344444444442.34444444443333344544443..3379************9997 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0033
                  B--EEEEEEEESSTT-..---GGGSSBSS-HHHHHHHHHH..CHHHCC-B--BSEE CS
  N6_N4_Mtase  99 tsthEyilvfsknkkyllkfnldaikvpyeekdklekrga..ytskkkgkkiediW 152
                   + ++++l f  n+++   ++l++i+  +e++ ++++ g+  ++   +  ++++ W
   CCD25670.1 146 ADINKTVLAFEDNYDK---NVLKTIQDLQEAYTEQKRHGKnnTDLPVRINETNTSW 198
                  5567788888888888...******************9965533334444444455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2848  (0.158849); expected 358.6 (0.02)
Passed bias filter:                      809  (0.0451224); expected 358.6 (0.02)
Passed Vit filter:                        88  (0.00490825); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.30s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 1459.76
//
Query:       CCD25671.1  [L=640]
Description: hypothetical protein NDAI_0F03530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-17   61.7   0.2    8.1e-13   48.0   0.1    3.4  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
      0.081   13.1   0.1        2.2    8.4   0.0    2.8  3  RRM_7     RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0   0.00096       8.6       2      34 ..     104     137 ..     103     145 .. 0.85
   2 !   48.0   0.1     9e-17   8.1e-13       1      65 [.     487     563 ..     487     567 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.00096
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.T CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrd.e 34 
                  ++nLp+d++e+e +++F    ++ksi+l+++ e
  CCD25671.1 104 RLSNLPKDLSEREAYAIFALAVEVKSIELITTeE 137
                 579**************************99753 PP

  == domain 2  score: 48.0 bits;  conditional E-value: 9e-17
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE............TTTSEEEEEEEEESSHHHHHHHHHHHTTEEET CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd............etgkskgfafVeFeskedAekAlealngkklg 65 
                 l+VgnLp d+te+eL++lFs  +++k+++   +            +   + +++fVeFe+   A+kAl++l g++l+
  CCD25671.1 487 LYVGNLPVDCTEQELRQLFSTQEGFKRLSFRVKnnnsnnvmlsnsNSAAHGPMCFVEFEDIAYATKALAELYGTQLP 563
                 8************************877666653354444444444556779*********************9986 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.63   5.7e+03       9      27 ..     108     126 ..     103     149 .. 0.74
   2 ?    0.9   0.2     0.057   5.2e+02      35      74 ..     363     402 ..     353     415 .. 0.76
   3 ?    8.4   0.0   0.00025       2.2       4      25 ..     487     508 ..     484     556 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.63
       RRM_7   9 lPiDiteeelkatfkefgk 27 
                 lP D++e+e +a f   ++
  CCD25671.1 108 LPKDLSEREAYAIFALAVE 126
                 8999999999888875554 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.057
       RRM_7  35 kaeskkkaaenskaakgyvflvfedeksvkaLleacteee 74 
                 ++++++++++++++ ++y  l + +++  + ++++ ++  
  CCD25671.1 363 QQQQQQEQQQKQQSLSSYNSLSHLNDSNTQPMVNNIMHAP 402
                 3444555555889999***999999999999999988766 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00025
       RRM_7   4 vFvGGlPiDiteeelkatfkef 25 
                 ++vG lP+D te+el + f++ 
  CCD25671.1 487 LYVGNLPVDCTEQELRQLFSTQ 508
                 69**************999853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2293  (0.127893); expected 358.6 (0.02)
Passed bias filter:                      733  (0.0408835); expected 358.6 (0.02)
Passed Vit filter:                        75  (0.00418317); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.29s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 4167.64
//
Query:       CCD25672.1  [L=626]
Description: hypothetical protein NDAI_0F03540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.16   11.5   0.1       0.38   10.3   0.1    1.6  1  DUF533          Protein of unknown function (DUF533)
       0.43   10.7   7.8       0.19   11.8   1.7    2.8  2  NYD-SP28        Sperm tail
        4.1    8.1   7.5        0.3   11.7   0.8    2.4  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac


Domain annotation for each model (and alignments):
>> DUF533  Protein of unknown function (DUF533)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   6.3e-05      0.38      62     118 ..     539     611 ..     505     618 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 6.3e-05
      DUF533  62 k.............f.q.eeeeekaelllrAmiaAAkADGhideeEr.qrIlqeleelgldaeekalledeLr 118
                 +             + + +++++++el +  mi   k+  ++  +E+ qrI q  ++l+l+++e ++l++ L 
  CCD25672.1 539 TpdnnnirvnsvpeMnNnNNNDNTNELFVDSMIRQLKSSYDVVMSEKdQRINQLERDLELQRQETQWLRKMLI 611
                 022334444432224233499*********************999975799999999************9985 PP

>> NYD-SP28  Sperm tail
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2     0.075   4.5e+02      25      65 ..     368     408 ..     345     410 .. 0.61
   2 ?   11.8   1.7   3.3e-05      0.19      55      86 ..     568     599 ..     548     610 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.075
    NYD-SP28  25 eeeaksseekfeeinekWreilrknkpqeLrkeleeqkqac 65 
                 +  + s+++ + + n  ++++   + pq+L+k l++ +q  
  CCD25672.1 368 ATNNMSNQQPMTNSNITMNTFDSSSLPQQLQKRLQTISQDV 408
                 3333444444445555677888899999***9999999865 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 3.3e-05
    NYD-SP28  55 rkeleeqkqaceelideKdklikelqeeLkek 86 
                 + ++ ++k+  + +++eKd+ i++l+++L+ +
  CCD25672.1 568 DSMIRQLKSSYDVVMSEKDQRINQLERDLELQ 599
                 5799***********************99754 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.9      0.97   5.8e+03      65      65 ..     391     391 ..     348     412 .. 0.41
   2 ?   11.7   0.8     5e-05       0.3      35      75 ..     570     610 ..     554     617 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.97
  HIP1_clath_bdg  65 r 65 
                     +
      CCD25672.1 391 S 391
                     2 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5e-05
  HIP1_clath_bdg  35 elerlkeeaerkleeqkeelekLkreleakraelarlkssL 75 
                      +++lk++ +  ++e+ + +++L+r+le +r+e + l++ L
      CCD25672.1 570 MIRQLKSSYDVVMSEKDQRINQLERDLELQRQETQWLRKML 610
                     56889999999*************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2199  (0.12265); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 4342.29
//
Query:       CCD25673.1  [L=246]
Description: hypothetical protein NDAI_0F03550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-34  118.6   0.0    3.1e-34  118.3   0.0    1.1  1  YjeF_N       YjeF-related protein N-terminus
  ------ inclusion threshold ------
        0.1   13.0   0.0        0.2   12.0   0.0    1.4  1  Endotoxin_C  delta endotoxin


Domain annotation for each model (and alignments):
>> YjeF_N  YjeF-related protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0   3.4e-38   3.1e-34       2     171 .]      28     204 ..      27     204 .. 0.91

  Alignments for each domain:
  == domain 1  score: 118.3 bits;  conditional E-value: 3.4e-38
      YjeF_N   2 eeLmenagravaevlrallg.....nspaekkvlvlvGsgnnGgdglaaArhLaqegakVtvllleeeekldedaeralellkkaggkvveekpeedle 95 
                 ++Lme ag +va+++++ +      +s  +k+v v++G+gnnGgdgl+aArhL   g++ +v+ + ++++ +   ++ +++l  +++ ++++++ +++ 
  CCD25673.1  28 QQLMELAGFSVAQAITREFPinkadQSLRKKNVFVIAGPGNNGGDGLVAARHLKLFGYNPIVY-YPKRSEKQPFYKQLVNQLDFFKVPLLSQEDNDNWM 125
                 69*****************999**9**********************************9994.66666777777777888888888888777777766 PP

      YjeF_N  96 ekls.apvdlviDAllGiglrgelreelaeliewlnss..eapvlavDiPSGldadtGavsgtavkadvtvtfgapkrg 171
                 + l+ ++  +++DA++G++++ ++r ++++++++l +   + p+++vDiP G+d+d+G +++  +++++ v++++pk++
  CCD25673.1 126 DYLKeEDTVCIVDAIFGFSFKPPMRPPFQDIVDKLVELedKIPIVSVDIPTGWDVDQGPITERFISPSLLVSLTVPKPC 204
                 6666899999*************************99887899**********************************98 PP

>> Endotoxin_C  delta endotoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.2e-05       0.2       3      37 ..      45      81 ..      43     100 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.2e-05
                 EEECCC-SCC..GTTEEEEEEECCCTCEEEEEECTSC CS
  Endotoxin_C  3 qiPavKasel..nsgasvikgpgftGGdlvklstssg 37
                  +P+ Ka +   +++  vi+gpg++GGd +   ++ +
   CCD25673.1 45 EFPINKADQSlrKKNVFVIAGPGNNGGDGLVAARHLK 81
                 589999998864489*************886655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       456  (0.0254337); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.28s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1767.66
//
Query:       CCD25674.1  [L=372]
Description: hypothetical protein NDAI_0F03560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.54    9.5   7.0      0.036   13.3   2.2    1.5  2  GBP       Guanylate-binding protein, N-terminal domain


Domain annotation for each model (and alignments):
>> GBP  Guanylate-binding protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.2     2e-06     0.036     126     254 ..       5     133 ..       1     139 [. 0.80
   2 ?   -3.7   0.2      0.32   5.7e+03     185     209 ..     263     287 ..     254     291 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2e-06
                 HHHHHHHHHHHHT..HHHHCCHHCSSTTCEEEEEEEECESSTTTS...TSCHHHHHHHHHHHTCCHCSSSHHHHHHHHHHHHHHHHESEEEEEEEE-SS CS
         GBP 126 qlvtEltelirak..edrvadeeefvkfFpslvflvRDfslelea...egklltedeyLekrLklkkgqdeklqkanllRkcirkfFpkrkcFvldrPg 219
                 +++ E t ++ +k  ++++ +  + +++Fp++   +    l  +    +  ++++ ++Le+ Lk+++ q + ++ka ++ +  +++ + +k+F ++   
  CCD25674.1   5 HYLREKTRMMESKksKNEITMIPNGTSYFPTFPIKIEPLKLRQKNyidNDTPVSNLDFLESVLKMEEFQLTTTDKASQPFEIFKRCHSVNKIFQMESFF 103
                 78889999999987788999999************9999997664111566778889****************************************** PP

                 HHHHCSTCGCSCBGGGS-HHHHHHHHHHHHHHHSC CS
         GBP 220 lkkalnakleelkedeldeeFkkqlkelvsyllse 254
                 +kk++n  + +      d +F + ++e +++++++
  CCD25674.1 104 HKKNMNRVVTS-----SDYSFDSTISEGTTMVFKD 133
                 ***99766655.....3455555566556666655 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.32
                 CHCSSSHHHHHHHHHHHHHHHHESE CS
         GBP 185 lkkgqdeklqkanllRkcirkfFpk 209
                  +kg+ + ++k+ +  k ++kfF +
  CCD25674.1 263 YQKGKGNSIDKFTNSLKNMSKFFAN 287
                 3445555555555555555556555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       922  (0.0514251); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2802.78
//
Query:       CCD25675.1  [L=962]
Description: hypothetical protein NDAI_0F03570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-57  193.7  10.1    2.8e-57  193.7  10.1    3.2  3  SMK-1     Component of IIS longevity pathway SMK-1


Domain annotation for each model (and alignments):
>> SMK-1  Component of IIS longevity pathway SMK-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7  10.1   1.5e-61   2.8e-57       2     191 .]     259     456 ..     258     456 .. 0.98
   2 ?    0.1   0.5     0.034     6e+02      26      61 ..     707     742 ..     688     767 .. 0.80
   3 ?   -1.4   0.1       0.1   1.8e+03     122     138 ..     842     858 ..     836     869 .. 0.72

  Alignments for each domain:
  == domain 1  score: 193.7 bits;  conditional E-value: 1.5e-61
       SMK-1   2 edYikkLlelfeeaedleslenLhalcsivktilllndeelleellsdelilgvvGilEydpefpehkanhRefLkqk.akfkevipikdeelkkkihq 99 
                 ++Yi+ L++lfe+ae+++ ++nL  l++i+kt++l+n+++++e +++d++i g+vGilEyd+efp +kanhR+ L+ + +++kevip+++++lk++i++
  CCD25675.1 259 SHYIDLLIRLFEKAENEKLIKNLLVLSNIIKTLMLYNQRDIIEVMIDDDHIEGIVGILEYDTEFPFSKANHRKSLSLSdSTLKEVIPLENKDLKTIIKK 357
                 79*************************************************************************97769******************* PP

       SMK-1 100 tyrlqylkDvvLarvlddstlsvLnsliffnqveIvsllqedeefLkelfkllk........deetekekrrelvlllkelcslaknlqlpareelfkt 190
                 ++rlq+lkDvvL+r+ldd++++++ ++i+  +++I+++l+ d+ fL+++++l++         e++ +e r+++++ll+++++++knl++ +++++fkt
  CCD25675.1 358 CFRLQFLKDVVLVRFLDDHNFNLILDIILDLETCIIDFLEVDP-FLDKIIELYHdndedrlkGEKQPSELRKNGIRLLHQCVQVSKNLDPLDKSKFFKT 455
                 *******************************************.**********99999999899999******************************9 PP

       SMK-1 191 L 191
                 L
  CCD25675.1 456 L 456
                 7 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.034
       SMK-1  26 alcsivktilllndeelleellsdelilgvvGilEy 61 
                 ++++++k++++l+d+    +++s+ l+  ++ +l +
  CCD25675.1 707 TCIRCFKNLICLDDKYYHRYMISNSLFDPIMQLLKI 742
                 45689******************9999887777665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.1
       SMK-1 122 vLnsliffnqveIvsll 138
                  ++++i+fn+ +I+   
  CCD25675.1 842 FIKDMIIFNKEQIILET 858
                 57888999998887543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (962 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1273  (0.0710023); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.40
# Mc/sec: 7140.85
//
Query:       CCD25676.1  [L=293]
Description: hypothetical protein NDAI_0F03580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-45  152.9   0.1    1.2e-44  152.7   0.1    1.1  1  adh_short_C2     Enoyl-(Acyl carrier protein) reductase
    9.1e-33  113.4   0.8    1.1e-32  113.0   0.8    1.1  1  adh_short        short chain dehydrogenase
    1.7e-09   37.9   0.1    2.3e-09   37.4   0.1    1.1  1  KR               KR domain
  ------ inclusion threshold ------
      0.012   14.7   0.4      0.016   14.4   0.4    1.1  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.078   12.4   0.1       0.11   12.0   0.1    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family


Domain annotation for each model (and alignments):
>> adh_short_C2  Enoyl-(Acyl carrier protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.7   0.1   3.3e-48   1.2e-44      31     233 ..      63     269 ..      32     270 .. 0.90

  Alignments for each domain:
  == domain 1  score: 152.7 bits;  conditional E-value: 3.3e-48
                   HHHHHHHHHHTTSE..E...EE--TTSHHHHHHHHHHHHHHHSSEEEEEE-----EGCSS-GGGH-HHHHHHHHHHHTHHHHHHHHHHHH.HCTSCC CS
  adh_short_C2  31 kkrveelaeelgae..v...lecDVtdeeqvealveevvekfgklDilvnnagiapklkgpfletsreefdraldvnlyslfllakaalp.lmkegg 121
                   +k++e+l+e  + e  v     +DV++ +q++ +v+++ve+fg+lD+++  a+       +++++s + f+ ++d++l + f+++ka+ p l+k++g
    CCD25676.1  63 AKEIETLVEHKEGEtiVlpiGDVDVRNFDQLQMAVKKTVETFGHLDYVIAGAAGNFI--CDVVNLSANAFKSVVDIDLLGSFNTVKACTPeLVKSKG 157
                   45666666655533343565789**************************88877777..*******************************999999* PP

                   EEEEEEEGGGTSBSTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE--BHCTGGGGSTTHHHHHHHHHHHSTTSS-B-HHHHHHHHHHHCSGG CS
  adh_short_C2 122 sivnlssvgaervvpnynaygaaKaalealtrylAvelgpkgiRvNavspgpikTlaasgikgfdelleelearaplgrlgtpeevaeaalfLasde 218
                   si+ +s +    +vp +++ gaaKa++ al+++lAvelgp giR N+++pg+i+ +   +  +  +++ee+ +r+pl+rlg+++++aea+++L+s++
    CCD25676.1 158 SILFVSATFHYYGVPFQSHVGAAKAGIDALSQNLAVELGPLGIRSNCIAPGAIDQTEGFKRLSGTNFKEESVKRIPLQRLGKTRDIAEATVYLFSPA 254
                   ******************************************************887666666899******************************* PP

                   GTT--SEEEEESTTG CS
  adh_short_C2 219 asyitGqtlvvDgGl 233
                   ++y+tG++ +vDgG+
    CCD25676.1 255 SAYVTGTVQIVDGGM 269
                   **************8 PP

>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.8   3.2e-36   1.1e-32       1     189 [.      23     218 ..      23     223 .. 0.93

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 3.2e-36
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT....TSEEEEE...E-TTTSHHHHHHHHHHHHHHHSSESEEEE---SS--SS CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee....gakalai...qvDvtdreevealvekavkklgkldvLvnNAGitgsgp 92 
                 kvvlvtG+++ I r  +++++  G+k ++v+r+ +k   +ake++ +    + + +++    vDv++ ++++ +v+k v+ +g+ld ++++A+ +  ++
  CCD25676.1  23 KVVLVTGGAGTICRVQVEAMVLLGCKATIVGREGQKTVDAAKEIETLvehkEGETIVLpigDVDVRNFDQLQMAVKKTVETFGHLDYVIAGAAGNFICD 121
                 89******************************************9988655333443312358999********************************* PP

                 GGGCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTEEEEEEEEGGGTSB-TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS.SHHHHH CS
   adh_short  93 fselseeewervievNltgvflltravlpamlkqssGrIvnvsSvagkvpvagvaaYsAsKaavagltrslakelaptgirvnavaPGlvd.Tdmake 189
                 + +ls++++++v+++ l g f++++a++p+++ +s+G+I +vs +   ++v+ ++  +A+Ka++++l+++la el p gir n++aPG++d T+  k+
  CCD25676.1 122 VVNLSANAFKSVVDIDLLGSFNTVKACTPELV-KSKGSILFVSATFHYYGVPFQSHVGAAKAGIDALSQNLAVELGPLGIRSNCIAPGAIDqTEGFKR 218
                 ******************************88.99********************************************************9987765 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1   6.3e-13   2.3e-09       2     162 ..      24     190 ..      23     205 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 6.3e-13
                 EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS..--HHHHHHHHHHHHT..T-EEEE-..---TT-HHHHHHHHHHHHHHSS---EEEE--------- CS
          KR   2 tylitGGlGgLGlelarwlaekgarhlvllsRsaaadedskaliaeleal..gaevevv..aaDvsdkdavealleeikaeeppikGvihaAgvlrdkl 96 
                 ++l+tGG+G ++++ ++ ++  g +   +++R+++++ d++++i++l ++  g ++ +   ++Dv + d+++ ++++  ++++ +  vi  A       
  CCD25676.1  24 VVLVTGGAGTICRVQVEAMVLLGCKA-TIVGREGQKTVDAAKEIETLVEHkeGETIVLPigDVDVRNFDQLQMAVKKTVETFGHLDYVIAGAAGNFICD 121
                 579********************766.457***********99*9998875566776553378999************************999999999 PP

                 TTT--HHHHHHHHTTTTHHHHHHHHHTTT...S--SEEEEEEEHHHHH--TT-HHHHHHHHHHHHHHHH CS
          KR  97 leemtaedleqvlapKvkGawnLhelled...esldffvlfSSiagllgsagqanYaaaNaflDalaey 162
                 + +++a+++++v+   + G+ n  +++++   +s   ++++S     +g + q++  aa a +Dal + 
  CCD25676.1 122 VVNLSANAFKSVVDIDLLGSFNTVKACTPelvKSKGSILFVSATFHYYGVPFQSHVGAAKAGIDALSQN 190
                 ********************99888888768777778888888899*******************9876 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.4   4.3e-06     0.016       1     121 [.      25     154 ..      25     194 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.3e-06
                      EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--..TT-HHHHHHHTT.......T-SEEEE---- CS
  Polysacc_synt_2   1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigd..vrdkerlekaleel.....kvdvvfhaAAl 87 
                      vlvtG++G+i +  v+ ++   +k   ++ r+ +k  + +ke+e+ +++k+   +iv  igd  vr+ ++l+ a++++     + d+v+  AA 
       CCD25676.1  25 VLVTGGAGTICRVQVEAMVLLGCKAT-IVGREGQKTVDAAKEIETLVEHKEG-ETIVLPIGDvdVRNFDQLQMAVKKTvetfgHLDYVIAGAAG 116
                      89*****************9999876.5677778888888888777777666.45577788622678788887777532323457899999986 PP

                      --....HHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-S CS
  Polysacc_synt_2  88 Kh....VPlveenpleaiktNvlgtenvieaaieagvk 121
                            V l  +   ++++   lg+ n+++a++   vk
       CCD25676.1 117 NFicdvVNLSANAFKSVVDIDLLGSFNTVKACTPELVK 154
                      54111144444555567778889999999999877766 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1     3e-05      0.11       1     114 [.      25     163 ..      25     179 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
                 EEEETTTSHHHHHHHHHHHHCT..SEEEEEES-STTTTCHHCHHC...........EEEE--TT-HH....HHHHHHHHH.T-SEEEE--S.---HHH. CS
   Epimerase   1 ilVtGatGfiGsalvkallekg..yevigldrlssasntarledl...........elveldltdrs....alerlfkee.qpdavihlAa.vggvaa. 79 
                 +lVtG++G i +  v+a+   g   +++g+  +++ ++ +++e+l            + ++d+++ +    a+++ ++++ + d+vi  Aa    +++ 
  CCD25676.1  25 VLVTGGAGTICRVQVEAMVLLGckATIVGREGQKTVDAAKEIETLvehkegetivlPIGDVDVRNFDqlqmAVKKTVETFgHLDYVIAGAAgNFICDVv 123
                 79***************9999976779999999999999988888*********996666666666633344555555555799999988855444430 PP

                 ..HHHSHHHHHHHHTHHHHHHHHHHHHHTCT...EEEEEE CS
   Epimerase  80 ..ssedpadfieknlqgtlnlleaarkagvk...rllfls 114
                   s++  + +++++l g+ n ++a+    vk    +lf+s
  CCD25676.1 124 nlSANAFKSVVDIDLLGSFNTVKACTPELVKskgSILFVS 163
                 0033333445667777777777777755444444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       380  (0.0211947); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2296.21
//
Query:       CCD25677.1  [L=460]
Description: hypothetical protein NDAI_0F03590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-48  164.7   2.8    1.1e-48  164.7   2.8    1.8  2  PH_18         Pleckstrin homology domain
      1e-29  102.7   2.5    3.2e-29  101.2   0.7    2.3  2  Rtt106        Histone chaperone Rttp106-like
      1e-16   60.4   0.8    2.9e-16   58.9   0.8    1.8  1  Rtt106_N      Histone chaperone Rtt106 N-terminal domain


Domain annotation for each model (and alignments):
>> PH_18  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7   2.8   1.9e-52   1.1e-48       1     141 []      66     201 ..      66     201 .. 0.98
   2 ?   -1.9   0.1      0.49     3e+03      96     129 ..     260     293 ..     241     298 .. 0.53

  Alignments for each domain:
  == domain 1  score: 164.7 bits;  conditional E-value: 1.9e-52
       PH_18   1 eieeeeiifelkdvsvlsPlRkklnLvlhlskeekkpvLslvkskdskpelsiedLkkniklavlLpvpeKknlvyLlivydekeedskkkdpiliqlN 99 
                 +i+++++if+l++vs+lsPlRkklnLvlhl   e +p+Lsl+  kd++ e+si dLk+ni++a++LpvpeK n++yL+i+y ++++dsk+ dp+li+lN
  CCD25677.1  66 SIDNTNTIFKLENVSILSPLRKKLNLVLHL--VEGQPMLSLL--KDNHIEFSIFDLKTNIQFATFLPVPEKPNIIYLFINY-KNSNDSKYFDPLLITLN 159
                 5899**************************..8899******..*************************************.99*************** PP

       PH_18 100 kdlvkkqlkkkglleaeaedfekiidylrrQaklvGfklvdy 141
                 k+l++++l+++g l+++++df k+i+y+rrQa+l+Gf+++d+
  CCD25677.1 160 KQLTLASLISSGDLDQSTKDFLKCIEYIRRQAILTGFRIFDP 201
                 ***************************************995 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.49
       PH_18  96 iqlNkdlvkkqlkkkglleaeaedfekiidylrr 129
                 +++N +l++k+ +k +    ++++++ki +y++r
  CCD25677.1 260 LTFNVTLITKSEEKFEFSMIDQSEYSKIDEYVKR 293
                 4455555554444433333333355666666655 PP

>> Rtt106  Histone chaperone Rttp106-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.14   8.1e+02      37      69 ..      76     116 ..      66     127 .. 0.79
   2 !  101.2   0.7   5.3e-33   3.2e-29       2      89 .]     214     300 ..     213     300 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.14
      Rtt106  37 iesvsfeRvsvtsrtfdlvvel..........kkeeveFsmid 69 
                  e vs+   s  +++ +lv++l          k++ +eFs  d
  CCD25677.1  76 LENVSIL--SPLRKKLNLVLHLvegqpmlsllKDNHIEFSIFD 116
                 4566666..9999********9988888888877888888766 PP

  == domain 2  score: 101.2 bits;  conditional E-value: 5.3e-33
      Rtt106   2 gVkasrkakeGlLyflekgllfgfkkPllfiplediesvsfeRvsvtsrtfdlvvelkk.eeveFsmidqeelegidefvkskgikiks 89 
                 +V+++r++keG+Lyfl+++++fgfkkP+l+++ ++ies++++  s+t+ tf++++ +k+ e++eFsmidq+e+ +ide+vk+k++ +ks
  CCD25677.1 214 HVECHRGTKEGTLYFLPDHIIFGFKKPILLFESSNIESITYS--SITRLTFNVTLITKSeEKFEFSMIDQSEYSKIDEYVKRKQVMDKS 300
                 8*****************************************..*************888999*********************99985 PP

>> Rtt106_N  Histone chaperone Rtt106 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.8   4.8e-20   2.9e-16       1      45 [.       1      45 [.       1      47 [. 0.96

  Alignments for each domain:
  == domain 1  score: 58.9 bits;  conditional E-value: 4.8e-20
    Rtt106_N  1 MteSFldkLPaeLrskvskItsvlPdSlSiFqelYnfALeedtes 45
                M++ Fl kLP+eL  k+ +Itsv+P+Sl iF++lYn+A++ + es
  CCD25677.1  1 MSDQFLSKLPEELSIKIKRITSVIPQSLEIFEQLYNYAIQSEVES 45
                9**************************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1699  (0.0947627); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        95  (0.00529868); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.92u 0.29s 00:00:01.21 Elapsed: 00:00:00.50
# Mc/sec: 2788.27
//
Query:       CCD25678.1  [L=421]
Description: hypothetical protein NDAI_0F03600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-43  146.8   0.8    8.9e-43  146.1   0.8    1.3  1  RIO1            RIO1 family
    2.2e-32  111.1   0.2    5.7e-32  109.8   0.1    1.8  2  Rio2_N          Rio2, N-terminal
    3.2e-07   30.5   0.0      0.028   14.3   0.5    2.6  2  APH             Phosphotransferase enzyme family
    4.8e-05   22.8   0.2      0.028   13.8   0.0    2.3  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.015   14.1   0.0      0.015   14.1   0.0    1.5  2  Pkinase_fungal  Fungal protein kinase
      0.037   12.7   0.0      0.037   12.7   0.0    1.7  2  THOC2_N         THO complex subunit 2 N-terminus
        1.8    8.5   9.5        2.4    8.0   9.5    1.2  1  TFIIA           Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.8   3.5e-46   8.9e-43       1     181 [.     108     287 ..     108     294 .. 0.92

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 3.5e-46
                 EEEEEEETTTEEEEEEEE-S---SS-HHHHCTTTSTTSTCG--GS-HHHHHHHHHHHHHHHHHHHHHTT--S--EEEEETTEEEEE--EETTEEGGBHH CS
        RIO1   1 nVyhavsedgkevaiKiyktstteFkkrkkyvsgekrfkdrksktnprklvklwaekEfrnLkrleeagvpvPkpielkrhvlvmefigedgvaapklk 99 
                 ++y++ +++g + ++Ki+++++t+F+++++ +++ k+  + k+  n+ +l++l+a+kE++ ++ l+++g++vP+p +  rh+++m +i+  g+++ +l+
  CCD25678.1 108 DIYQVSDKNGVSKVMKIHRLGRTSFHTVRNNRDYLKK--NVKNGVNWMYLSQLAANKEYQFMSMLYTKGFEVPEPFDNSRHIIIMGLIE--GYPMRRLR 202
                 69*********************************99..77889*********************************************..******** PP

                 HCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEET......T.EEEE--GTTEEETTSTTHHHHHHHHHHHHHHHHHTTC-- CS
        RIO1 100 dveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvde......d.kvviIDvsQaveldhpnalefLerDveniikfFrrkgve 181
                 + +   ++ +ly+++++  ++ +++ gl+H+D++e+N+++++      d ++v+ID++Q ++++hp+a+ +++rDv++i +fF++k  +
  CCD25678.1 203 KHN---NIPKLYNDLMK-FIVRLANSGLIHCDFNEFNIMIKDevedenDcGFVVIDFPQCISIQHPDAEFYFQRDVDCIRRFFKKKLKY 287
                 **9...9**********.666677***************9862222223569*********************************9876 PP

>> Rio2_N  Rio2, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.1   2.2e-35   5.7e-32       1      82 []       8      91 ..       8      91 .. 0.98
   2 ?   -3.2   0.0       4.1   1.1e+04      38      54 ..     211     227 ..     197     231 .. 0.58

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 2.2e-35
      Rio2_N  1 lryLskedfrvLtavEmgmrnhevVptelieeisrlk.eeevkkrlsrllkaklisr.ktakydGYkLtyeGyDyLALktlvkr 82
                +r+L+++dfrvL++vE+g++nhevVpt+li+++s+++ ++++++++s+l+k klisr ++akydGY+Lty+G DyLALkt+ +r
  CCD25678.1  8 MRFLTADDFRVLQGVEQGSKNHEVVPTTLIHQLSGMRaMSGTNRAISDLAKLKLISRlRNAKYDGYRLTYNGIDYLALKTMLNR 91
                799**********************************99******************************************987 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 4.1
      Rio2_N  38 eeevkkrlsrllkakli 54 
                  ++++k + rl++ +li
  CCD25678.1 211 YNDLMKFIVRLANSGLI 227
                 35556666666666666 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.9e-05     0.048      35     106 ..     158     222 ..     100     225 .. 0.70
   2 !   14.3   0.5   1.1e-05     0.028     166     205 ..     224     268 ..     221     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SSHHHHHHHHHHHHHHHHHHCCHH CS
         APH  35 eeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllrklsaaqlpellealgeflaalh 106
                   + +e++++  L   g+ vPe+++    +  + + + lie+ p r l+    ++ +p+l+ +l  f+ +l 
  CCD25678.1 158 LAANKEYQFMSMLYTKGFEVPEPFD----NSRHIIIMGLIEGYPMRRLRK---HNNIPKLYNDLMKFIVRLA 222
                 456678889999999999*******....5555557**************...***************9996 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.1e-05
                 EEEE-SS-SGGGEEEC......TTEEEEE---.TT-EEEECCHHH CS
         APH 166 tvllHgDlhpgNllvd....pddgrvtGviDf.edaglgpplyDl 205
                  +l+H+D++  N++++    ++++    viDf ++ ++ +p +++
  CCD25678.1 224 SGLIHCDFNEFNIMIKdeveDENDCGFVVIDFpQCISIQHPDAEF 268
                 589****************944444346****9999999998887 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0014       3.6      42      78 ..     143     180 ..     119     185 .. 0.90
   2 !   13.8   0.0   1.1e-05     0.028     124     191 ..     211     282 ..     200     305 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0014
         Kdo  42 gklskdlyrfk.lgrtravrEfrllkrLeeagvavpkp 78 
                 +k +k+ + +  l+++ a +E++ +  L+ +g++vp+p
  CCD25678.1 143 KKNVKNGVNWMyLSQLAANKEYQFMSMLYTKGFEVPEP 180
                 566788899999************************98 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.1e-05
         Kdo 124 lkavgrliaklhragvnHadlyaknillqqee..eeeaeiwliDldkarlrlr..adrwrekdLarLkrsfl 191
                 ++++ + i +l + g+ H d++  ni+++ e   e++  +++iD+ ++       a+   ++d + + r f+
  CCD25678.1 211 YNDLMKFIVRLANSGLIHCDFNEFNIMIKDEVedENDCGFVVIDFPQCISIQHpdAEFYFQRDVDCIRRFFK 282
                 556667899999*****************9985566777899******877653566777777777777665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0   5.8e-06     0.015     294     365 ..     193     264 ..      86     274 .. 0.75
   2 ?   -3.1   0.3      0.99   2.5e+03     249     260 ..     353     364 ..     314     399 .. 0.44

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 5.8e-06
  Pkinase_fungal 294 pvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilitds.kkegerkglLiDLDlakelsdd 365
                       G p+++ ++  ++ +   D  k   +L  + g++H D  e Ni+i d+ ++e+++  ++iD+   ++++++
      CCD25678.1 193 IEGYPMRRLRKHNNIPKLYNDLMKFIVRLA-NSGLIHCDFNEFNIMIKDEvEDENDCGFVVIDFPQCISIQHP 264
                     556666666666666677778888888899.9******************88888888899**9887777764 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.99
  Pkinase_fungal 249 sskaevklkkse 260
                      ++ e +++++e
      CCD25678.1 353 YNSDEEEEEEEE 364
                     111111111111 PP

>> THOC2_N  THO complex subunit 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.4e-05     0.037     397     504 ..     201     328 ..     185     331 .. 0.73
   2 ?   -5.5   4.3       4.7   1.2e+04     336     356 ..     352     371 ..     333     399 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
     THOC2_N 397 LgryPwlaevdpeipelihRilehsle.plyesvravplssee................kvae.dqsglpkgskvkltesp.kkrllrwpktdkple.l 475
                 L+++  +++++++++++i+R+ +  l    +++++   +++ e                ++++ d ++  ++  v   ++  kk+l ++pk d+++  +
  CCD25678.1 201 LRKHNNIPKLYNDLMKFIVRLANSGLIhCDFNEFNIMIKDEVEdendcgfvvidfpqciSIQHpDAEFYFQRD-VDCIRRFfKKKLKYEPKSDSTMLdT 298
                 99********************986541556665533322222445677777777766666666666666655.5555555788899999999988655 PP

     THOC2_N 476 dl.nkkyrFyydeWkdnlpvcqtvddvfkl 504
                 d  +  y++ y+e +  +++c+++d++++ 
  CCD25678.1 299 DGfGDGYKYAYPEFARDIERCDNLDELVQA 328
                 559************************986 PP

  == domain 2  score: -5.5 bits;  conditional E-value: 4.7
     THOC2_N 336 LsdddDtepkkekeakkkeka 356
                   ++d++e+++e+ ++++e++
  CCD25678.1 352 VYNSDEEEEEEEE-EETDEDE 371
                 3333333221111.1111111 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   9.5   0.00095       2.4     325     363 ..     339     398 ..     261     404 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00095
       TFIIA 325 e.....................eeeeeesdedsdsessddedeqveEDplNSdDDvdded 363
                 +                     eeeeee ded+   ++ d+++ + +D +N dD +++  
  CCD25678.1 339 RsleeavesmrnavynsdeeeeEEEEEETDEDEHYYTETDSEKAEGDDNINDDDEENERI 398
                 0444444444444444433211444444444444444444455599*****999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1719  (0.0958782); expected 358.6 (0.02)
Passed bias filter:                      952  (0.0530983); expected 358.6 (0.02)
Passed Vit filter:                       154  (0.00858944); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 2845.67
//
Query:       CCD25679.1  [L=213]
Description: hypothetical protein NDAI_0F03610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.2e-10   38.6   3.4    1.9e-09   37.2   3.4    1.8  1  Rick_17kDa_Anti  Glycine zipper 2TM domain
    0.00025   21.0   0.4    0.00081   19.3   0.4    1.9  1  Gly-zipper_Omp   Glycine zipper
  ------ inclusion threshold ------
        0.4   10.4   8.5        1.3    8.8   8.2    2.1  2  Gly-zipper_YMGG  YMGG-like Gly-zipper
        3.4    7.9  14.8      0.053   13.6   2.2    2.3  2  Bacteriocin_IIc  Bacteriocin class II with double-glycine lea


Domain annotation for each model (and alignments):
>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   3.4   4.3e-13   1.9e-09       2      41 ..      77     115 ..      76     116 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 4.3e-13
  Rick_17kDa_Anti   2 GaliGAaaGgvaGaaigggggrvlGavvGAaaGavaGnai 41 
                       +++G+aaG++ G++i+  ++++lG+v GA+ Ga+++n+i
       CCD25679.1  77 STVVGGAAGAYTGSRISQ-NHSKLGGVMGALGGAFLANKI 115
                      69**************99.*******************99 PP

>> Gly-zipper_Omp  Glycine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.4   1.8e-07   0.00081       4      38 ..      79     115 ..      69     123 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.8e-07
  Gly-zipper_Omp   4 aiGAaaGaliGg..avggrgtGaliGAavGaavGgli 38 
                     ++G+aaGa  G+    +++  G ++GA  Ga++ + i
      CCD25679.1  79 VVGGAAGAYTGSriSQNHSKLGGVMGALGGAFLANKI 115
                     67888888888864456889*******9999987655 PP

>> Gly-zipper_YMGG  YMGG-like Gly-zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.9   0.00032       1.4      23      41 ..      69      90 ..      62      96 .. 0.71
   2 ?    8.8   8.2   0.00028       1.3       6      38 ..      77     110 ..      72     113 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00032
                     XXXXXX...XXXXXXXXXXXXX CS
  Gly-zipper_YMGG 23 sgggkG...AaiGAaaGalaGg 41
                     ++g +G   +++G+aaGa +G 
       CCD25679.1 69 NNGERGllsTVVGGAAGAYTGS 90
                     5566666668889999988886 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00028
                      XXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXX CS
  Gly-zipper_YMGG   6 GAaiGAaaGAvvGaliG.sgggkGAaiGAaaGal 38 
                       +++G+aaGA  G  i  ++   G + GA  Ga 
       CCD25679.1  77 STVVGGAAGAYTGSRISqNHSKLGGVMGALGGAF 110
                      688999*******999988888999999999995 PP

>> Bacteriocin_IIc  Bacteriocin class II with double-glycine leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   2.2   1.2e-05     0.053      18      58 ..      65     111 ..      48     113 .. 0.79
   2 ?   -0.4   5.0      0.29   1.3e+03      32      54 ..     183     205 ..     178     212 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.2e-05
  Bacteriocin_IIc  18 G...kcaqgtvggivggalaGaatGaa...tlgilgaavGavvGavv 58 
                      +   ++    + ++v+g++aGa tG         lg++ Ga++Ga+ 
       CCD25679.1  65 QsipNNGERGLLSTVVGGAAGAYTGSRisqNHSKLGGVMGALGGAFL 111
                      35555666667788889999999999998888889999999999985 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.29
  Bacteriocin_IIc  32 alaGaatGaatlgilgaavGavv 54 
                      +  G  +G++ +g+ g+ +G+  
       CCD25679.1 183 GFQGDCQGGPPGGPPGGFQGGYQ 205
                      55667777774444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       548  (0.030565); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1589.90
//
Query:       CCD25680.1  [L=613]
Description: hypothetical protein NDAI_0F03620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.1e-229  762.1   8.6   3.5e-229  762.0   8.6    1.0  1  HSP70     Hsp70 protein
    2.3e-16   59.5   0.5    8.2e-15   54.4   0.2    2.2  2  MreB_Mbl  MreB/Mbl protein
     0.0014   18.4   0.0     0.0027   17.5   0.0    1.5  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
  ------ inclusion threshold ------
      0.029   14.8   4.7          3    8.3   0.1    3.6  3  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  762.0   8.6  7.7e-233  3.5e-229       1     594 [.       9     610 ..       9     613 .] 0.97

  Alignments for each domain:
  == domain 1  score: 762.0 bits;  conditional E-value: 7.7e-233
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 +iGiDLGtt+s+va  e+ ++e+iane+gnr+tPs+vaFt++erl+G+aAk+qa+ npkntvf++KrliGr+f++++vq+++k++p+kv    +g++v+
  CCD25680.1   9 AIGIDLGTTYSCVATYES-SVEIIANEQGNRVTPSFVAFTPEERLIGDAAKNQAALNPKNTVFDAKRLIGRRFDEESVQQDMKTWPFKVIDV-DGNPVI 105
                 59************9986.79********************************************************************998.9***** PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTC..CSSSCEEEEEEEEX CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGld..kkdkernvlvyDlG 194
                 eve+ ge  +f+p++is+mvL+k+ke+aea +gkkv++avitvPaYfndaqRqatkdAg+i GLnvlRi+NepTAaa+aYGl   k+dker+vl++DlG
  CCD25680.1 106 EVEYLGEtkTFSPQEISSMVLNKMKEIAEAKIGKKVEKAVITVPAYFNDAQRQATKDAGAISGLNVLRIINEPTAAAIAYGLGagKSDKERHVLIFDLG 204
                 ******999************************************************************************9633777*********** PP

                 SSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEE CS
       HSP70 195 ggtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlsekl 293
                 ggtfdvS+l++  Gv+ vk+T+g+thlGG+dfD++l+eh+  efkkk+g+d+s d +al+rl++aae+aK++LSs   t++++e+++++e g+d++ +l
  CCD25680.1 205 GGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKGEFKKKTGLDISGDARALRRLRTAAERAKRTLSS--VTQTTVEVDSLFE-GEDFEASL 300
                 ***************************************************************************..688888999****.******** PP

                 EHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTC...GCSHCCEEEE CS
       HSP70 294 sRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpDeavaiGAAvqagvlsge...eevkdllllD 388
                 +Ra+fe+l++ l++ tlepve++lkdak++k +idevvlvGGstRiPkvq+l++++f+ k+++k++npDeava+GAAvq+++l+g+    e+kdllllD
  CCD25680.1 301 TRARFEDLNASLFKSTLEPVEQVLKDAKISKTQIDEVVLVGGSTRIPKVQKLLSDFFDgKQLEKSINPDEAVAYGAAVQGAILTGQstsDETKDLLLLD 399
                 *********************************************************88**************************9777799******* PP

                 BESS-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETT CS
       HSP70 389 vtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdke 487
                 v pLslg+ ++g+++  + +rntt+pt k ++f+t+ dnqt+v+  v+qger   k+n+llg+f+l++ipp+p+G+p +e  f++danGil+v+a +k+
  CCD25680.1 400 VAPLSLGVGMQGDIFGIVVPRNTTVPTIKRRTFTTVGDNQTTVQFPVYQGERVNCKENTLLGEFDLKNIPPMPAGEPVLEAIFEVDANGILKVTAVEKS 498
                 *************************************************************************************************** PP

                 TCCEEEEEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..GGGSTHHHHHHHHHHHHHHHCHT..TSSCHHHHHH CS
       HSP70 488 tgkeeeitieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee..aekvseaekekvesaieeLkeel..eeeekeeiea 581
                 tgk+++iti+++ g ls++eiekmv++aee++++d++ +++ ea++++e++v s+e+++++   ++k+++ +k+k+e+a+++  ++l  e+++++++++
  CCD25680.1 499 TGKSANITISNAVGrLSSDEIEKMVNQAEEFKAADEAFAKKHEARQRLESYVASIEQTVTDPvlSSKLKRGSKSKIEAALADALSALsiEDSSTDDLRK 597
                 ************999**********************************************9999************9988766665224555999999 PP

                 HHHHHHHHHHHHH CS
       HSP70 582 kteelkkvvekia 594
                 +   lk+vv+k +
  CCD25680.1 598 AEVGLKRVVTKAM 610
                 9999999888876 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0     0.008        36       3      33 ..       9      47 ..       7      69 .. 0.72
   2 !   54.4   0.2   1.8e-18   8.2e-15      76     316 ..     123     377 ..     117     384 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.008
                EEEEEE-SSEEEE..EETTTEEEEEE......ES-EEEE CS
    MreB_Mbl  3 dlgiDLGtantlv..yvkgkgivlne......psvvAik 33
                 +giDLGt+   v  y +   i+ ne      ps vA++
  CCD25680.1  9 AIGIDLGTTYSCVatYESSVEIIANEqgnrvtPSFVAFT 47
                69*******999866777788888874444446666655 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 1.8e-18
                 HHHHHHHHHHHTSS-S.S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSS...S-EEEEEE-SS-EEEEEEETTEEE.E CS
    MreB_Mbl  76 ellkyfikkvkkkksl.skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveep...sgnmvvdiGggttevavislggiv.t 169
                 +++ + +k+++++k+  + ++ vi+vP   ++ +r+A k+a    G +   +i+ep aAAi  gl   ++   +  ++ d+Gggt +v+++ ++g v t
  CCD25680.1 123 SMVLNKMKEIAEAKIGkKVEKAVITVPAYFNDAQRQATKDAGAISGLNVLRIINEPTAAAIAYGLGAGKSdkeRHVLIFDLGGGTFDVSLLHIAGGVyT 221
                 566666677777555426789****************************************9888775541115679**************98664414 PP

                 EEE....ES-SHHHHHHHHHHHHHHHHSEE--HH...HH...HHHHHHH-BSS--HHHH....EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHH CS
    MreB_Mbl 170 sks....vrvaGdeldeaiikyirkkynlliGer...ta...ekikieigsavkeeeee....kmeikGrdlvtglpkevevsseevrealkepvsaiv 254
                  ks     +++G+++d +++++ + +++   G      a   ++++++   a+ +        +++++   l +g   e++++ ++ ++  ++ +++ +
  CCD25680.1 222 VKStsgnTHLGGQDFDTNLLEHFKGEFKKKTGLDisgDAralRRLRTAAERAKRT---LssvtQTTVEVDSLFEGEDFEASLTRARFEDLNASLFKSTL 317
                 4442233689*************99998777754111230013334443333333...133469999999***************************** PP

                 HHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS.S-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 255 eavkevLektppeLaadivdrgivltGGgallkgldkllseetg.lpvkvaedpltcvakGtg 316
                 e v++vL++++  +++  +d+ +vl+GG++ +  ++klls+ ++  + + + +p ++va G++
  CCD25680.1 318 EPVEQVLKDAK--ISKTQIDE-VVLVGGSTRIPKVQKLLSDFFDgKQLEKSINPDEAVAYGAA 377
                 *******9875..56666665.7888***************9962457788899999999986 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     6e-07    0.0027     127     196 ..     312     382 ..     270     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6e-07
      FGGY_C 127 aleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilg.vpVerpkt.aeatalGaAilAav 196
                 ++ ++   + ++l+  +  s+ ++d+++++GG ++ + +++ll d +  + +e+  + +ea+a GaA+ +a+
  CCD25680.1 312 LFKSTLEPVEQVLKDAKI-SKTQIDEVVLVGGSTRIPKVQKLLSDFFDgKQLEKSINpDEAVAYGAAVQGAI 382
                 344444445555555544.5999************************98999999888**********9986 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1    0.0083        37       1      36 [.      10      42 ..      10     148 .. 0.79
   2 ?    8.3   0.1   0.00066         3       4     102 ..     202     374 ..     199     377 .. 0.65
   3 ?    1.4   0.2     0.097   4.3e+02      33      70 ..     505     547 ..     480     605 .. 0.58

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0083
                EEEEE-SSSEEEEEEETTEEEEEEEES-.-HHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvigv.ggngitkd 36
                +++D+G++ ++va +e      +++i   +gn +t +
  CCD25680.1 10 IGIDLGTTYSCVATYES----SVEIIANeQGNRVTPS 42
                58**************9....7888877777777755 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00066
                 EE-SSSEEEEEEETTEEEE.....EEEES--HHHHHHH...................HHHHHT--HHHHHHHHHHH--S--.................. CS
                 xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxx.................. RF
        FtsA   4 DiGagktdvavaedgalvh.....lrvigvggngitkd...................iakalrtaveeAerikikyGsala.................. 60 
                 D+G+g+ dv++++  + v+     +    +gg+ ++                      a+alr    +Aer k++  s+ +                  
  CCD25680.1 202 DLGGGTFDVSLLHIAGGVYtvkstSGNTHLGGQDFDTNllehfkgefkkktgldisgDARALRRLRTAAERAKRTLSSVTQttvevdslfegedfeasl 300
                 777777777777775544444433223333666666666666677777777777666678999999999999987777777777777777777776666 PP

                 .........................EEEEEHHHHH......GGGGSTTHHHHHHHHHT-..HH.HT-GGGHHHH CS
                 .........................xxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
        FtsA  61 .........................ekeigrkels......ggsalpnleelaeralspklee.vsdpeyasal 102
                                          + +i++ +++      g++ +p++++l+++ +  k+ e   +p  a+a+
  CCD25680.1 301 trarfedlnaslfkstlepveqvlkDAKISKTQIDevvlvgGSTRIPKVQKLLSDFFDGKQLEkSINPDEAVAY 374
                 6666666666666666666655555444444444499999999***********99955533335666666555 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.097
                 HHHH......HHHHHT--HHHHHHHHHHH--S--...EEEEEHHHHH CS
                 xxxx......xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
        FtsA  33 itkd......iakalrtaveeAerikikyGsala...ekeigrkels 70 
                 it +       +  + + v++Ae+ k    +a +   +k+  r++l+
  CCD25680.1 505 ITISnavgrlSSDEIEKMVNQAEEFK----AADEafaKKHEARQRLE 547
                 44444455556778899999999999....22223442222223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       931  (0.051927); expected 358.6 (0.02)
Passed bias filter:                      599  (0.0334096); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 4329.04
//
Query:       CCD25681.1  [L=276]
Description: hypothetical protein NDAI_0F03630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-07   28.7   0.1    1.9e-06   27.6   0.1    1.6  1  KH_1      KH domain
  ------ inclusion threshold ------
      0.014   15.2   0.9      0.029   14.2   0.1    1.9  2  KH_2      KH domain
       0.26   11.2   1.5       0.55   10.2   1.5    1.5  1  Spo12     Spo12 family


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   3.2e-10   1.9e-06       8      62 ..     196     259 ..     188     263 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 3.2e-10
                 GGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT...........T.-EEEEEESHHHHHHHHH CS
        KH_1   8 sslvgriIGkgGsnIkeIreetgakIkvpk.sedeg........sderevtisGspeavekAke 62 
                 +  vg++IG +G +I ++re ++a I++ +  +  +        s + ++ i G+ ++v+  ++
  CCD25681.1 196 KPEVGFLIGEQGHRIEKLRESSNATIQILPiAKRFRlmdilcpdSINQQISIVGDVYSVALGIA 259
                 4469****************88*******8666666*******************999987666 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.54   3.2e+03      36      41 ..      44      49 ..      10      53 .. 0.68
   2 ?   14.2   0.1   4.8e-06     0.029      25      60 ..     188     223 ..     169     231 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.54
                HHHHHT CS
        KH_2 36 pgivIG 41
                ++i+IG
  CCD25681.1 44 KKIIIG 49
                556666 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 4.8e-06
                 CEEEEEEEESCHHHHHTGGGHHHHHHHHHHHHHHHH CS
        KH_2  25 nrviiviresqpgivIGkgGsnikkigkelrkdiek 60 
                    +i +++ + g +IG +G +i+k+++  +  i++
  CCD25681.1 188 LEMNILLTKPEVGFLIGEQGHRIEKLRESSNATIQI 223
                 56788999999*****************99998875 PP

>> Spo12  Spo12 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.5   9.3e-05      0.55       7      22 ..      94     109 ..      93     112 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 9.3e-05
       Spo12   7 llSPCsqKLnahKsKl 22 
                 l+ PC++KL  +KsK+
  CCD25681.1  94 LQIPCTKKLLTLKSKY 109
                 566************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1981.74
//
Query:       CCD25682.1  [L=85]
Description: hypothetical protein NDAI_0F03640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-28   98.7   1.2    1.9e-28   98.5   1.2    1.1  1  Mrx7      MIOREX complex component 7


Domain annotation for each model (and alignments):
>> Mrx7  MIOREX complex component 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   1.2     1e-32   1.9e-28       1      65 [.       9      73 ..       9      74 .. 0.97

  Alignments for each domain:
  == domain 1  score: 98.5 bits;  conditional E-value: 1e-32
        Mrx7  1 eewLyrkLLeSpgFhrfVrkihakvngiketeiseekqesellykptrrqklkaFrklFldElkn 65
                +ewLy+kLLeSp+Fh+fV +i++kvngik+ ++ e +++ ++ly+ptr++k+kaFr+lF+dE+++
  CCD25682.1  9 QEWLYYKLLESPSFHKFVGNIYRKVNGIKDVPPPEFMSDIHFLYTPTRKHKFKAFRMLFFDEYRT 73
                79******************************9999**************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       223  (0.0124379); expected 358.6 (0.02)
Passed bias filter:                      176  (0.0098165); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 637.93
//
Query:       CCD25683.1  [L=801]
Description: hypothetical protein NDAI_0F03650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.3e-161  534.9   1.7   1.1e-160  534.5   1.7    1.1  1  VID27     VID27 C-terminal WD40-like domain
    6.7e-49  166.1   0.2    6.7e-49  166.1   0.2    2.8  3  VID27_N   VID27 N-terminal region
    1.1e-31  109.3   1.1      4e-30  104.3   0.3    2.7  2  VID27_PH  VID27 PH-like domain


Domain annotation for each model (and alignments):
>> VID27  VID27 C-terminal WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  534.5   1.7  1.9e-164  1.1e-160       2     354 ..     442     794 ..     441     796 .. 0.99

  Alignments for each domain:
  == domain 1  score: 534.5 bits;  conditional E-value: 1.9e-164
       VID27   2 knsqlavgykndrsfvvrgdkiGvfkhtddnelefstaiskvetlkgkllsPkkvmlheedrklilqdekdknklykmDlerGkvvdewkvhddipvve 100
                 +n++l++++kn+rs+vvrg+kiGvfk+++d++lef+tai++v+tl+gk+l+P++ ml++ dr++il+d+++knklykmDlerG++v+ew++ d++ +v+
  CCD25683.1 442 TNKSLTIAFKNNRSYVVRGNKIGVFKTDEDDDLEFVTAIKSVSTLDGKTLDPRNPMLYMGDRSMILSDSSTKNKLYKMDLERGQIVEEWSTGDKN-LVQ 539
                 8********************************************************************************************99.99* PP

       VID27 101 fapekkfaqlteeqtllGlsknalfriDPrlsg.nklvdselkqyaskndfsavattekGyiavasekGdirlfdrlginaktalPalgdpiigldvsa 198
                 ++p+kkf+qlt+eqtllG+s+++lf+iDPr+++ nk+v++++k+y++k++fs+++tte+Gyiav+se+Gdi+l+drlgi+akta+P+lg+pi++l vsa
  CCD25683.1 540 YGPTKKFDQLTAEQTLLGISQKGLFKIDPRINTsNKVVQEQSKDYVTKYKFSSLGTTESGYIAVGSERGDIKLYDRLGIRAKTAIPSLGEPIKHLIVSA 638
                 ********************************99***************************************************************** PP

       VID27 199 dGrwvlatcktyllLiDalikegkneGklgfeksfakdskpkprrLklkpehvaqlqeetkkpvsftkakfntgldseettivtstGpfvitwslkkvl 297
                 dG+w+latc+ +llL+D ++k+gkn+G++gf k f++++ +k+++Lk++peh++++++ tkkpvsf+ka+fntg++++e++i+tstGpf+++wslkkv+
  CCD25683.1 639 DGKWLLATCDRSLLLLDLTVKTGKNSGNVGFLKPFPSSEVVKTYILKISPEHTSYISTFTKKPVSFSKAYFNTGVGKQEEMILTSTGPFAVSWSLKKVI 737
                 *************************************************************************************************** PP

       VID27 298 kgkkdpYkikryeeevvadnfkfgsdknvivalkndvsmvkkkslkkptreslatea 354
                 +g+k+pY i+rye+++v+dnf+fg++k+vivalk+dvs++k ks+kkp++++l++++
  CCD25683.1 738 RGDKNPYVIRRYENDIVEDNFEFGTNKKVIVALKDDVSLSKIKSFKKPNKDVLMPKS 794
                 *****************************************************9875 PP

>> VID27_N  VID27 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.1   0.2   1.1e-52   6.7e-49       1     173 []       1     178 [.       1     178 [. 0.90
   2 ?   -2.9   0.1      0.89   5.3e+03     139     168 ..     341     370 ..     334     373 .. 0.85
   3 ?    1.4   4.1     0.042   2.5e+02      69     137 ..     402     484 ..     393     492 .. 0.63

  Alignments for each domain:
  == domain 1  score: 166.1 bits;  conditional E-value: 1.1e-52
     VID27_N   1 MfllkslgkllfgssskeelieipsGqLylvr.pqspkgsselifkdAaasirrttqefqyqLvvqrvyeegeeelleeeee.edde...a....kkek 90 
                 M+++k+    ++g + ke+l++ipsGq+ l+r + spk+s e+i++dA++ ir+t  +fqy+Lvv+r  + +e+   +++++ +dd+        k ++
  CCD25683.1   1 MNIIKK----FMGAGVKEDLMSIPSGQFDLLRsSASPKASLECIYNDAILIIRET-GQFQYELVVRRNSDAEESPSGDSSDDySDDTasiLssqsKITS 94 
                 888888....**********************999********************.99***********998865544433303333444156678899 PP

     VID27_N  91 dekvflldeeLkfrveekedgekvlaWrdlsgdegdl.yeFvvdesvkeeevkqfelvayqcqyErkyrksaekateedLeefe 173
                 de+vf l+e+Lkf  + +++g+ +++W+++ gde+d+ ++Fv++ +++++e++qf l++++cqyE+k++ks+ ka+ +dL +fe
  CCD25683.1  95 DEWVFPLSESLKFYKNWNDNGKITFVWKNTIGDEDDEkVQFVLSPEMPMTEADQFLLLIHRCQYETKFKKSSVKASADDLAQFE 178
                 *************9999999**************9999********************************************96 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.89
     VID27_N 139 eevkqfelvayqcqyErkyrksaekateed 168
                 +++ +f+++  +c + + +++  ek++e++
  CCD25683.1 341 KKCIEFQSIWSKCLWMTLHKQEWEKVSENE 370
                 67889999999**99999999999999876 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.042
     VID27_N  69 eegeeelleeeeeedde..a........kkekdekvflldeeLkfrveekedgekvlaWrdl...sgdegdlyeFvvd.esvk 137
                 e++eee ++e+e++d+e  +         + + +++  ld + ++ +  k++ + v+  + +   + de+d  eFv+  +sv+
  CCD25683.1 402 EDDEEEEESENEDDDSEysKtiigsesfDEGRAKSTASLDTNKSLTIAFKNNRSYVVRGNKIgvfKTDEDDDLEFVTAiKSVS 484
                 45554444444444444441455644444445556778888777777888777777777665445889999999998766655 PP

>> VID27_PH  VID27 PH-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.021   1.3e+02      29      47 ..      46      64 ..      35     137 .. 0.82
   2 !  104.3   0.3   6.8e-34     4e-30       5     109 .]     256     357 ..     252     357 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.021
    VID27_PH 29 aavielgkweYwLqiegee 47
                + + e+g+++Y L+++ ++
  CCD25683.1 46 LIIRETGQFQYELVVRRNS 64
                567799*********9554 PP

  == domain 2  score: 104.3 bits;  conditional E-value: 6.8e-34
    VID27_PH   5 eeeaeLhlfDaesgeFilqeeevkaavielgkweYwLqiegeeekewlgqevsadmnpvfnfeylsfifnyvsedgealSwlLrFkdeeeleefqealm 103
                 +  a+++l+D+ +++Filq+++vk++++e+g++e+wL+iege+ k  lg+++s+++np+f+   +sfifny+  ++ +lS++++F++ +++ efq++++
  CCD25683.1 256 RLLASIYLYDPIQETFILQDDRVKVCIVETGRYEFWLAIEGEKVK--LGTDISPSINPTFELLNSSFIFNYY-FNSVVLSYTIKFSTLKKCIEFQSIWS 351
                 56789***********************************99977..*************************.9999********************** PP

    VID27_PH 104 ralwes 109
                 ++lw++
  CCD25683.1 352 KCLWMT 357
                 ****85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       900  (0.050198); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 5536.04
//
Query:       CCD25684.1  [L=168]
Description: hypothetical protein NDAI_0F03660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.8e-09   37.3   0.3    5.1e-09   36.5   0.3    1.4  1  Neugrin        Neugrin
    3.7e-05   23.6   0.0     0.0021   18.0   0.0    2.4  2  HTH_11         HTH domain
     0.0003   20.2   0.1    0.00054   19.4   0.1    1.4  1  Sigma70_r4     Sigma-70, region 4
  ------ inclusion threshold ------
      0.036   13.9   0.0      0.066   13.1   0.0    1.4  1  MarR_2         MarR family
      0.079   12.8   0.2       0.86    9.5   0.0    2.4  2  HTH_23         Homeodomain-like domain
      0.085   13.5   1.7       0.31   11.7   0.0    2.4  2  HTH_32         Homeodomain-like domain
      0.098   12.5   0.0       0.24   11.3   0.0    1.7  1  HTH_AsnC-type  AsnC-type helix-turn-helix domain
        0.1   12.5   0.0       0.19   11.7   0.0    1.5  1  MarR           MarR family
       0.12   12.8   0.3       0.12   12.8   0.3    1.8  2  DUF4019        Protein of unknown function (DUF4019)
       0.51   10.5   5.3        1.3    9.2   5.1    1.7  1  MRP-L20        Mitochondrial ribosomal protein subunit L20


Domain annotation for each model (and alignments):
>> Neugrin  Neugrin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.3   2.8e-12   5.1e-09       6      67 ..      76     138 ..      72     166 .. 0.83

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 2.8e-12
     Neugrin   6 aPeRrLtWeaieqiRYLkeefpeeWtvprLaeGFdvstDvirRvlkskfvPtle..rklkqDak 67 
                 aP+++L+   +  +R L+e fp+  t   L e F+vs++ irR+lks++ P+++  r++ q  k
  CCD25684.1  76 APKKKLSRTEMGSVRLLREQFPD-MTASELGEKFKVSPEAIRRILKSNWKPSEDedRRIAQRWK 138
                 9*********************8.599************************9861255555443 PP

>> HTH_11  HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.047        85       6      21 ..      18      34 ..      15      39 .. 0.88
   2 !   18.0   0.0   1.2e-06    0.0021       7      37 ..      90     120 ..      88     121 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.047
      HTH_11  6 lelLleargp.isgeeL 21
                ++lL+e++g+ isg+++
  CCD25684.1 18 VTLLKESKGKiISGKKI 34
                579************98 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 1.2e-06
      HTH_11   7 elLleargpisgeeLAeeLnvSrrtvrrdIk 37 
                 +lL+e+ ++++++eL e+++vS  ++rr +k
  CCD25684.1  90 RLLREQFPDMTASELGEKFKVSPEAIRRILK 120
                 577666677******************9766 PP

>> Sigma70_r4  Sigma-70, region 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1     3e-07   0.00054      13      42 ..      89     120 ..      79     121 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 3e-07
                 HHHHH..TTT--HHHHHHHHTS-HHHHHHHHH CS
  Sigma70_r4  13 lelrf..geglTleEIgerlgiSrerVrqiek 42 
                 ++l +  + ++T +E+ge++ +S e++r+i+k
  CCD25684.1  89 VRLLReqFPDMTASELGEKFKVSPEAIRRILK 120
                 555556799*********************87 PP

>> MarR_2  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.7e-05     0.066      16      43 ..      93     120 ..      80     121 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.7e-05
                 CTTTSEEEHHHHHHHHTSSHHHHHHHHH CS
      MarR_2  16 rrpgrdltvgelarrlglsksavsrilk 43 
                 r+  +d+t++el +++++s+ a+ rilk
  CCD25684.1  93 REQFPDMTASELGEKFKVSPEAIRRILK 120
                 444458********************98 PP

>> HTH_23  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00048      0.86      11      39 ..      89     120 ..      88     129 .. 0.88
   2 ?   -0.2   0.3      0.51   9.2e+02      32      40 ..     132     140 ..     130     143 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00048
      HTH_23  11 llllae...GlsvreIAreLgvsrrTvyrwlk 39 
                 ++ll+e    ++ +e  +++ vs+  ++r+lk
  CCD25684.1  89 VRLLREqfpDMTASELGEKFKVSPEAIRRILK 120
                 56777779999*******************98 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.51
      HTH_23  32 rTvyrwlkr 40 
                 r  +rw+kr
  CCD25684.1 132 RIAQRWKKR 140
                 445667666 PP

>> HTH_32  Homeodomain-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00017      0.31      17      73 .]      66     119 ..      56     119 .. 0.79
   2 ?    0.2   0.4      0.66   1.2e+03       6      14 ..     134     142 ..     130     164 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00017
      HTH_32  17 Lkdrprrg..rpr.klsdevrariiallreeprWsprqlaarlaeregvkvShstvyriL 73 
                 Lk++ ++   +p+ kls  ++  ++ l+++ p++++++l ++       kvS++ ++riL
  CCD25684.1  66 LKEKFKGErwAPKkKLSRTEMGSVRLLREQFPDMTASELGEKF------KVSPEAIRRIL 119
                 555533322566658*************8789*******9999......9*********8 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.66
      HTH_32   6 lkRyneeGl 14 
                  +R++++G 
  CCD25684.1 134 AQRWKKRGE 142
                 444444442 PP

>> HTH_AsnC-type  AsnC-type helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00013      0.24      10      36 ..      90     117 ..      89     120 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00013
  HTH_AsnC-type  10 eaLqed.aRisyaeLAervGlSestvlr 36 
                    ++L+e+ + ++ +eL+e+  +S+++++r
     CCD25684.1  90 RLLREQfPDMTASELGEKFKVSPEAIRR 117
                    78999999*****************997 PP

>> MarR  MarR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00011      0.19       2      39 ..      82     120 ..      81     121 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00011
                 -HHHHHHHHHHHHSTT.EEHHHHHHHHTS-HHHHHHHHH CS
        MarR   2 tltqfviLrilyeqgp.lsvseLakklgvskstvtrvld 39 
                 ++t++  +r+l+eq p ++ seL++k++vs+ ++ r+l+
  CCD25684.1  82 SRTEMGSVRLLREQFPdMTASELGEKFKVSPEAIRRILK 120
                 66666667777766444*****************99998 PP

>> DUF4019  Protein of unknown function (DUF4019)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.3   6.4e-05      0.12       6      49 ..      48      90 ..      37     106 .. 0.88
   2 ?   -2.6   0.1       4.1   7.3e+03      13      25 ..     132     144 ..     120     151 .. 0.64

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.4e-05
     DUF4019  6 lelvDagkyeesWeeasalfkkavteeewekalkavraplGavk 49
                +  +D++k+ ++W++   ++k++++ e+w+ + k  r+++G+v+
  CCD25684.1 48 MGKIDKEKM-DTWKRQNIALKEKFKGERWAPKKKLSRTEMGSVR 90
                667888876.68*****************************996 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 4.1
     DUF4019  13 kyeesWeeasalf 25 
                 ++++ W++ ++ +
  CCD25684.1 132 RIAQRWKKRGEKI 144
                 4566666655554 PP

>> MRP-L20  Mitochondrial ribosomal protein subunit L20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.1   0.00072       1.3      83     149 ..      78     140 ..      45     146 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00072
     MRP-L20  83 kyhltkedieeirrLraeDPekwsrkkLakkFgcsklfvsmvteapkekkkeveaeleavkerWgek 149
                 k +l+  +   +r Lr++ P+  ++++L +kF++s+  ++ +++ + +  ++   e  ++ +rW+++
  CCD25684.1  78 KKKLSRTEMGSVRLLREQFPD-MTASELGEKFKVSPEAIRRILKSNWKPSED---EDRRIAQRWKKR 140
                 458999999***********7.59*******************998555554...555688888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       993  (0.0553851); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.39u 0.28s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1251.48
//
Query:       CCD25685.1  [L=195]
Description: hypothetical protein NDAI_0F03670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.058   13.2   0.3      0.095   12.5   0.3    1.4  1  DUF4923   Lipocalin-like domain (DUF4923)
       0.22   12.1   2.1       0.43   11.1   2.1    1.4  1  DUF16     Protein of unknown function DUF16


Domain annotation for each model (and alignments):
>> DUF4923  Lipocalin-like domain (DUF4923)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.3   1.1e-05     0.095      81     147 ..     107     178 ..      91     185 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.1e-05
     DUF4923  81 fnkdstftiklkkktlkG.....tYsldakdktvtLklakllslnakvkksgnelsLlfdadkLlelltals 147
                 f+k+ tf+++++   ++       ++l++ ++ ++ +   + s++ +vk+ +++++L+  ++k+++  ++++
  CCD25685.1 107 FEKEVTFEAQTHWPDIESkingaVWKLNHINQSIHSSSNDIASFSFQVKLLTDQMQLTDTSEKVIHKAKKVA 178
                 888889998887554444444478*************99*************************99988887 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.1   4.8e-05      0.43      31      90 ..      96     173 ..      72     180 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.8e-05
                 ...................BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHH CS
       DUF16  31 s..................nkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetlelile 90 
                 s                   +++  +ie k++    ++n+++q ++   + i   + ++k   ++++  d + ++i +
  CCD25685.1  96 SaerciqtddlfekevtfeAQTHWPDIESKINGAVWKLNHINQSIHSSSNDIASFSFQVKLLTDQMQLTDTSEKVIHK 173
                 34444444445555566667888999*******************************************999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       919  (0.0512577); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1551.69
//
Query:       CCD25686.1  [L=663]
Description: hypothetical protein NDAI_0F03680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-52  179.0   2.4    1.1e-52  179.0   2.4    2.3  2  LIM_bind  LIM-domain binding protein


Domain annotation for each model (and alignments):
>> LIM_bind  LIM-domain binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.5      0.03   5.4e+02     138     200 ..      99     181 ..      61     207 .. 0.66
   2 !  179.0   2.4   6.2e-57   1.1e-52       1     241 []     316     579 ..     316     579 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.03
    LIM_bind 138 eeliprsalekklkqllesa......ssaspkvskkvskrqg.ifgklsskepaeepp...................eavkqlpsspvn 200
                 ++++p++++  +  ++l+ a      ++ sp+++++++++q  + +          ++                   e ++++++++++
  CCD25686.1  99 QPFVPMNQISGAQGPMLMRApinhvqHNYSPRTNQEQMYQQYdSKQYFTT------NNeniiqphpyatddppvsrnESLQNQQKNMKG 181
                 56777777777765555555777777777778888777777622222211......111223334555566666555555555555544 PP

  == domain 2  score: 179.0 bits;  conditional E-value: 6.2e-57
    LIM_bind   1 lrllelierlsnrsnedsdieyWrkfvaefFspdavlrltlkldeqekepkqFeittpllPryfrtlfesgvkslqlildgareqvlsngsivlecdka 99 
                 l+++eli+++++++n+ ++i  W  +++++F p+a +++  kl   +++ +++++ +++lP + + + ++g+ ++++i +++++q+lsng++++ ++ +
  CCD25686.1 316 LKVYELINFINESTNQLANIPRWAIYIDKNFLPSAEINIIRKL---NHDVRKYQFLASMLPIISEKFEAMGMYRMEVIAQKLHTQTLSNGTVYFGSPCC 411
                 699****************************************...89*************************************************** PP

    LIM_bind 100 tfvytyedgsrvvlegqlrvlfdadlkIewlefavrsheeliprsalekklkqllesa..............ssaspkvskkvskrqgifgklsskepa 184
                 tf y+y+dgs+v+++ q+++++d++l++ w++++v s++++i++++lek++++ + s               s++s+++  ++   +     + +  ++
  CCD25686.1 412 TFAYHYQDGSYVTHFTQIKGVLDRTLRLAWIDLTVFSFVPGIEWNSLEKLVSNSKVSFnifqklanpshlsmSKDSAEIDVNDDDIKD----ETNDVND 506
                 **************************************************98887777999999999888875555555444433332....2222222 PP

    LIM_bind 185 eepp...........eavkqlpsspvn.....sfGitesvmrfLeiaevmssmkdLmsfskknnilsPleaLk 241
                 ++++           ea+++l+s++ +      +  ++++mr+ +i++vmssmk++m f+k+++i++P ea+k
  CCD25686.1 507 KKDKvgkqiefppnfEAITELRSQFGVfrdisLLNSQNHFMRVAQISTVMSSMKNIMLFQKQKKIINPKEAMK 579
                 22225566688899***************99999*************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 4429.42
//
Query:       CCD25687.1  [L=911]
Description: hypothetical protein NDAI_0F03690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-46  156.5  14.9    6.6e-45  152.1   0.2    3.5  3  Rap1-DNA-bind    Rap1, DNA-binding
      3e-21   75.3   0.0      3e-21   75.3   0.0    2.7  3  Rap1_C           TRF2-interacting telomeric protein/Rap1 - C 
    8.3e-19   67.8   1.4    2.9e-18   66.0   0.0    2.7  3  BRCT_2           BRCT domain, a BRCA1 C-terminus domain
    6.1e-13   48.7   1.3    2.4e-10   40.5   0.0    4.3  5  Myb_DNA-binding  Myb-like DNA-binding domain
    6.2e-09   35.9   0.2    0.00038   20.6   0.0    3.3  3  Myb_DNA-bind_2   Rap1 Myb domain
  ------ inclusion threshold ------
      0.037   14.4   0.0       0.11   12.9   0.0    1.8  1  BRCT             BRCA1 C Terminus (BRCT) domain
       0.71    6.9  23.8       0.94    6.5  23.8    1.1  1  GREB1            Gene regulated by oestrogen in breast cancer


Domain annotation for each model (and alignments):
>> Rap1-DNA-bind  Rap1, DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.2       1.1   2.8e+03      23      33 ..     314     324 ..     282     363 .. 0.58
   2 !   12.3   1.8   7.8e-05       0.2      16      80 ..     383     489 ..     369     509 .. 0.72
   3 !  152.1   0.2   2.6e-48   6.6e-45       1     108 []     524     655 ..     524     655 .. 0.99

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.1
  Rap1-DNA-bind  23 kqkdpdtgesl 33 
                    kq+++++ +++
     CCD25687.1 314 KQQQQQQQQQQ 324
                    11111111111 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 7.8e-05
  Rap1-DNA-bind  16 kqflakikqkdpdtgeslikdedlkellakrklt..........................................varefFkelakkkprHtens 69 
                    +q +++++q+++++ ++++++++ ++++a++                                              +  +++e+ +  p+Ht ns
     CCD25687.1 383 QQQQQQQQQQQQQQQQQQQHEQNGESHVAQNRSHayensrsplvrspngpthnkssftetedefildvvrknptrrTTHTLYDEISHYVPNHTGNS 478
                    3333333333333333333333333343333333678888999*********999999999999999999999999999999999*********** PP

  Rap1-DNA-bind  70 WrdryrKfvle 80 
                     r r+r ++++
     CCD25687.1 479 IRHRFRVYLSK 489
                    ******99976 PP

  == domain 3  score: 152.1 bits;  conditional E-value: 2.6e-48
  Rap1-DNA-bind   1 kftaedDyaLatevkkqflakikqkdpdtgeslikdedlkellakrklt........................varefFkelakkkprHtensWrd 72 
                    kfta++DyaLa++vkkqf+++++q+dpd+g+sli+ +d+++++a+r++t                        +arefFk++a+++p+Hten+Wrd
     CCD25687.1 524 KFTADEDYALAVSVKKQFYRDLYQIDPDSGQSLISAQDSPTAIARRNMTmdpnhipgsepgfkeykvndrkgpIAREFFKSFADENPTHTENAWRD 619
                    8*********************************************************************************************** PP

  Rap1-DNA-bind  73 ryrKfvleygidkyikyyekekaageepeplknltn 108
                    ryrKf+l++g+d yi+yye e+a+g+ep+p+knltn
     CCD25687.1 620 RYRKFLLTFGVDAYIAYYEIERASGREPKPMKNLTN 655
                    **********************************96 PP

>> Rap1_C  TRF2-interacting telomeric protein/Rap1 - C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   1.0         7   1.8e+04      65      76 ..     314     323 ..     295     331 .. 0.48
   2 ?   -5.0   2.7         7   1.8e+04      59      65 ..     390     396 ..     375     411 .. 0.50
   3 !   75.3   0.0   1.2e-24     3e-21       4      84 .]     827     907 ..     825     907 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 7
      Rap1_C  65 erlekkhgeeri 76 
                 ++ ++   +++ 
  CCD25687.1 314 KQQQQQ--QQQQ 323
                 222221..2222 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 7
      Rap1_C  59 gderdle 65 
                 +++++ +
  CCD25687.1 390 QQQQQQQ 396
                 2222222 PP

  == domain 3  score: 75.3 bits;  conditional E-value: 1.2e-24
      Rap1_C   4 slGykdefithaLkatsldppvlanyvlealkrgkglpknkrGiWteedDeaLkagderdlerlekkhgeerierRrkFle 84 
                 ++G+++ f t++L+a s+d++v+ +y+l ++k++ + p+n++GiWt+edDe+L++++ +dl+ lekkhg  rie RrkF+e
  CCD25687.1 827 EAGVRRTFSTSILTALSGDLMVFPRYFLTMFKDNINPPPNVPGIWTREDDEMLRSNKGEDLQALEKKHGVGRIEIRRKFVE 907
                 78*****************************************************************************85 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.0   1.1e-21   2.9e-18       2      85 .]     166     250 ..     165     250 .. 0.91
   2 ?   -3.1   0.5       4.4   1.1e+04      26      55 ..     289     321 ..     278     337 .. 0.55
   3 ?   -1.5   0.0       1.4   3.5e+03      19      40 ..     495     527 ..     481     554 .. 0.67

  Alignments for each domain:
  == domain 1  score: 66.0 bits;  conditional E-value: 1.1e-21
      BRCT_2   2 sklFeglrFYin...daeps.psreklkklIeknGGevveti...tsavyiviaesneeelaekrkrrvvspkyIkdCikkgkllplenyl 85 
                 + +Fe+++F+in    a++s ++ ++l++lI++nGGe+v+      s++++v++++n      ++k+++++++yI+ Ci++ +llplenyl
  CCD25687.1 166 KLVFENIKFFINrdsGAIDSsTEADQLERLITANGGEIVKALpqqASSDFFVVSPYN------DTKLPTITTTYIRTCIARDTLLPLENYL 250
                 679********9999788888*****************9988544556*********......78*************************6 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.4
      BRCT_2  26 klIeknGGevvetitsavyiviaesneee...l 55 
                 + +e+nG e  ++ +s++ +  +e+++++   +
  CCD25687.1 289 QAVEQNGLEPDQHDSSNTAHQESEQKQQQqqqQ 321
                 555555555555555554444444443334321 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.4
      BRCT_2  19 psreklkklIeknGGevveti...........t 40 
                 ++ +k+ kl+++ +G++ +t             
  CCD25687.1 495 YEVDKYGKLVRDEDGNLIKTKllppsikkkftA 527
                 677889999999999998877444444333332 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   9.2e-14   2.4e-10       1      46 []     436     487 ..     436     487 .. 0.95
   2 ?    2.0   0.0     0.092   2.4e+02       1      19 [.     522     540 ..     522     571 .. 0.84
   3 ?    0.8   0.0      0.22   5.7e+02      27      45 ..     606     624 ..     584     625 .. 0.77
   4 ?   -3.1   0.3       3.6   9.3e+03       1      10 [.     757     766 ..     757     766 .. 0.86
   5 ?   -0.5   0.1      0.57   1.5e+03       3      12 ..     870     879 ..     868     892 .. 0.89

  Alignments for each domain:
  == domain 1  score: 40.5 bits;  conditional E-value: 9.2e-14
                      CSSSBHHHHHHHHHHHHHHTTC......HHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkhGnr......WkkIaerlggRtekqcrsrwrnyl 46 
                      ++++te Ede +l++v+k   r      +++I+++++++t++++r+r+r yl
       CCD25687.1 436 KSSFTETEDEFILDVVRKNPTRrtthtlYDEISHYVPNHTGNSIRHRFRVYL 487
                      689***************99656***************************97 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.092
                      CSSSBHHHHHHHHHHHHHH CS
  Myb_DNA-binding   1 rgkWteeEdelLleavkkh 19 
                      ++k+t++Ed  L+  vkk+
       CCD25687.1 522 KKKFTADEDYALAVSVKKQ 540
                      689*********9999984 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.22
                      HHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding  27 aerlggRtekqcrsrwrny 45 
                      a++ +++te++ r+r+r+ 
       CCD25687.1 606 ADENPTHTENAWRDRYRKF 624
                      67779************96 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 3.6
                      CSSSBHHHHH CS
  Myb_DNA-binding   1 rgkWteeEde 10 
                      r+ +t eE+e
       CCD25687.1 757 RNDFTNEEEE 766
                      6789****97 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.57
                      SSBHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelL 12 
                       Wt e+de L
       CCD25687.1 870 IWTREDDEML 879
                      5******998 PP

>> Myb_DNA-bind_2  Rap1 Myb domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.5e-07   0.00038       3      60 ..     437     490 ..     435     493 .. 0.91
   2 ?   -1.8   0.0       1.4   3.6e+03       4      18 ..     524     538 ..     522     543 .. 0.82
   3 !   11.3   0.0   0.00011      0.29      32      57 ..     601     625 ..     594     627 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.5e-07
  Myb_DNA-bind_2   3 lpyteeeDaailkyvkekerspasvkGnkiwkelekkhltrHsWQslkdRylkrlrkq 60 
                      ++te eD+ il+ v    ++p + +   ++ e+ +  + +H+  s++ R+++ l k+
      CCD25687.1 437 SSFTETEDEFILDVV---RKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKR 490
                     57*************...7788888999*******9999.************999887 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.4
  Myb_DNA-bind_2   4 pyteeeDaailkyvk 18 
                      +t++eD a+   vk
      CCD25687.1 524 KFTADEDYALAVSVK 538
                     59*******988775 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 0.00011
  Myb_DNA-bind_2  32 iwkelekkhltrHsWQslkdRylkrl 57 
                      +k ++ +++  H+  +++dRy+k l
      CCD25687.1 601 FFKSFADENP-THTENAWRDRYRKFL 625
                     6899******.8***********965 PP

>> BRCT  BRCA1 C Terminus (BRCT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   4.4e-05      0.11       2      44 ..     165     211 ..     164     238 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 4.4e-05
                 TTTTTTTEEEEE....EESTSSHHHHHHHHHHHHTTCEEESSCSTTS CS
        BRCT   2 kellfhgckfvi....tgvldnftrdeleelikehGGkvttevskkt 44 
                 k l+f+++kf+i        ++++ d+le+li  +GG +++++ ++ 
  CCD25687.1 165 KKLVFENIKFFInrdsGAIDSSTEADQLERLITANGGEIVKALPQQA 211
                 5689********9985555677888999***********88774332 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  23.8   0.00037      0.94    1090    1255 ..     264     435 ..     221     468 .. 0.47

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.00037
       GREB1 1090 sdllesdaeklsstdnedeelqedgerpksnssavqstsdsvaadaaeessktspvkvekseskdavesglsskasakselse..asaaaasaseea 1184
                     l+ d ek+ + d  ++ + e++++ ++n+ +  + ++s +a++++e++++++++ ++++ +++++   + + ++++  ++   ++ ++ +++++
  CCD25687.1  264 LRSLNGDGEKADQNDHIQNHVSEEQQAVEQNGLEPDQHDSSNTAHQESEQKQQQQQQQQQQQREEQLKLIHEHNIEMENINQDiaREQLSEDQRNTS 360 
                  4455666666666666666666666666666655544444444444433333333333332222222222222222222211121223344445555 PP

       GREB1 1185 kspkasvtseeeeseeske.kekeslsketesqlsleaseqkealda...kasskssssssssssassPssscsl 1255
                  ++p++s+ +++ ++ + ++ +e++++++++++q ++++++q+e+  +    ++ +++  +s s+ ++sP+  ++ 
  CCD25687.1  361 SQPQSSLGTDMPAHIKLQHeQEQQQQQQQQQQQQQQQQQQQHEQNGEshvAQNRSHAYENSRSPLVRSPNGPTHN 435 
                  566666555544433333212222222222222222222222222222223333444455666666666433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3691  (0.205868); expected 358.6 (0.02)
Passed bias filter:                      783  (0.0436723); expected 358.6 (0.02)
Passed Vit filter:                       300  (0.0167327); expected 17.9 (0.001)
Passed Fwd filter:                       118  (0.00658152); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.88u 0.36s 00:00:02.23 Elapsed: 00:00:00.58
# Mc/sec: 4757.65
//
Query:       CCD25688.1  [L=324]
Description: hypothetical protein NDAI_0F03700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      2e-08   35.0   1.3    2.9e-08   34.5   1.3    1.3  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   1.3   1.6e-12   2.9e-08       2     172 ..      53     260 ..      52     297 .. 0.75

  Alignments for each domain:
  == domain 1  score: 34.5 bits;  conditional E-value: 1.6e-12
                  EEEEEESBTBTTCCTHHHHHHHHHHHHHHHTTESEEEEE.STSSSSSHHHHHHHHH.HHHHHHHTSEEEEEC-TTS...................... CS
  Metallophos   2 rilvigDlHlalgggqlddllkllddllreekpdlvlla.GDlvdrgdlekellel.laalvkypipvylllGNHe...................... 75 
                  r++++gD+H     g + ++++l+d+ l+  + + +l++ GD+   g+ + +++ + l+++ +    + ++lGN +                      
   CCD25688.1  53 RVIFTGDVH-----GKYTEFKDLIDNKLNGLDENTLLILlGDFMIKGPDSRKVVSYiLEHKDQ----IKCVLGNNDilvllaylnphlplskgrtihs 141
                  899******.....**********8887776777666666*******9999999995666666....8************************999999 PP

                  .....CHHH.HHHHHHHHHHHH..HHHHEHHHCEEETSEEEEEETTE.........EEEEEEESE.CEEE.........THHHHHHHHHHHSCHHHHC CS
  Metallophos  76 .....gfee.ellnkygylgif..sepwrsdaevfnnlplaslgsgs.........lkvlllhGg.spel.........lvsldklgslnleleapep 146
                       +f+   ++ +++ ++i    +++ ++++++n l la++ s            +++ +h+g  p++         ++ l++++ l+  + ++e 
   CCD25688.1 142 vrnplNFTTdHSFTPQDISKISarHRQIAKEVGYVNLLALAQHCSVAieveleltrETLFGAHAGvLPGDfmdhgphrhTHPLSSVKALTDMKYVDE- 238
                  9999988887777777777777778888888999999999996666666667766667777777774444455555558777777777777777776. PP

                  CHHHHHHHHHHTTCSEEEEEESSESS CS
  Metallophos 147 gdewlkdlekrekadwvivlgHsply 172
                   d+w +     ++ d+++ + +  l+
   CCD25688.1 239 -DDWTHT---SREPDTKHSIKWYKLW 260
                  .666666...5555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       603  (0.0336327); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.28s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2367.46
//
Query:       CCD25689.1  [L=609]
Description: hypothetical protein NDAI_0F03710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-52  175.9   0.9    1.3e-51  174.8   0.1    1.9  2  MgsA_C           MgsA AAA+ ATPase C terminal
    1.9e-20   72.9   0.9    6.8e-20   71.2   0.9    1.9  1  AAA_assoc_2      AAA C-terminal domain
    1.8e-15   57.6   0.1    5.8e-15   55.9   0.0    1.9  2  AAA              ATPase family associated with various cellul
      5e-13   49.1   0.0      3e-11   43.3   0.0    2.4  1  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    1.3e-08   34.9   0.0    3.8e-08   33.4   0.0    1.8  1  AAA_14           AAA domain
    4.9e-07   30.3   0.2    0.00091   19.6   0.0    2.5  2  AAA_16           AAA ATPase domain
    2.7e-06   27.7   1.5    3.9e-05   24.0   0.2    3.0  2  AAA_22           AAA domain
    5.8e-06   26.3   0.0    1.9e-05   24.7   0.0    1.9  1  AAA_5            AAA domain (dynein-related subfamily)
    2.5e-05   23.8   0.0    8.2e-05   22.1   0.0    1.8  1  TniB             Bacterial TniB protein
     0.0001   22.0   0.0      0.001   18.8   0.0    2.1  1  Sigma54_activat  Sigma-54 interaction domain
    0.00042   19.8   0.2      0.047   13.1   0.2    2.3  1  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0012   19.2   0.2       0.31   11.3   0.0    2.4  2  AAA_19           AAA domain
     0.0093   15.7   0.0      0.018   14.8   0.0    1.4  1  IstB_IS21        IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.014   15.1   0.0      0.034   13.9   0.0    1.6  1  AAA_24           AAA domain
      0.014   15.0   0.5      0.036   13.7   0.1    1.8  2  hGDE_central     Central domain of human glycogen debranching
      0.017   15.7   0.0       0.05   14.2   0.0    1.9  1  AAA_18           AAA domain
       0.03   14.8   0.0       0.09   13.3   0.0    1.9  1  ABC_tran         ABC transporter
      0.045   13.8   0.5       0.72    9.8   0.2    2.6  2  ResIII           Type III restriction enzyme, res subunit
      0.048   13.8   0.0       0.14   12.2   0.0    1.8  2  AAA_2            AAA domain (Cdc48 subfamily)
      0.079   13.4   0.0        0.3   11.5   0.0    2.1  2  RNA_helicase     RNA helicase


Domain annotation for each model (and alignments):
>> MgsA_C  MgsA AAA+ ATPase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       2.7   2.4e+03      76     117 ..     105     146 ..     102     163 .. 0.78
   2 !  174.8   0.1   1.5e-54   1.3e-51       1     144 [.     433     580 ..     433     592 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.7
                 S----GG.GHHHHHHHHH---------GGGST.......... CS
      MgsA_C  76 apKSnaaykAikkaledvkekkslevPlhLrnaptklakklg 117
                 a+K  ++++++++ ++++++k ++e+    + a+  l+++l 
  CCD25689.1 105 AKKTSTSTTGVNATQSSIESKLKEEIAVLKKSAHLPLSERLR 146
                 788889999999999999999999988877777777766665 PP

  == domain 2  score: 174.8 bits;  conditional E-value: 1.5e-54
                 TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHHCS----GG.GHHHHHHHHH----.. CS
      MgsA_C   1 GSdpdAAlyylarmleaGedprfiaRRlviiAseDiGlAdpqalqlavaaaeaveriGlpEariaLaqavvylalapKSnaaykAikkaledvkekk.. 97 
                 GSd +A+lyylarml++Gedp ++aRR+++iAseDiG+ d++ l+la+aa ++v ++GlpEa++aL +++v la apKS ++y+A++++++ ++e+k  
  CCD25689.1 433 GSDENASLYYLARMLQGGEDPLYVARRMIRIASEDIGIRDNSLLSLAIAAHDTVMKLGLPEADMALVHCCVALARAPKSVEIYRAWNNIKSMLNENKys 531
                 9********************************************************************************************999866 PP

                 ..-----GGGST...........T-T---GGG--SS------S-CCG-- CS
      MgsA_C  98 ..slevPlhLrnaptklakklgygkgYkyphdypegvvkqqylpdelkk 144
                   s+e+P+h+rnapt+l+k+lgy+kgYky+ dy +g vkq+y+p+e+ +
  CCD25689.1 532 laSSEIPMHIRNAPTSLMKDLGYSKGYKYNPDYVDGKVKQEYFPEEVLH 580
                 6678*****************************************9843 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.9   7.6e-23   6.8e-20       4      81 .]     335     432 ..     333     432 .. 0.93

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 7.6e-23
                  .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................XXXXXXXXXXXXXXXXXXX.....XXXXXXXXXHHHHHHHHHHHHH CS
  AAA_assoc_2   4 klkleddalealaeladGDaRkaLnlLElaaeaaeak...............egkieitledleealqrka.....lryDkagdehYdliSAlhKSiR 81 
                  +l+l++d++e++++++ GDaR+aLn+LE +  +++++               e+k++itl+d+++++++++     ++yD +gd hYd iSA+hK++R
   CCD25689.1 335 ALQLSRDIMEYIVDVSVGDARRALNILEKVEISTRQDdktngkgnsaetaesEEKKVITLNDVRDIIKNNSdsilnTYYDVKGDFHYDAISAFHKAVR 432
                  6899************************77777777779************99999***********99988998899*******************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   6.5e-18   5.8e-15       1     127 [.     179     301 ..     179     305 .. 0.78
   2 ?   -2.4   0.0       6.6   5.9e+03      52      74 ..     383     404 ..     368     437 .. 0.72

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 6.5e-18
                 EEEESSTTSSHHHHHHHHHHHH......THE.........EEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS....TSEEEEEETGGGHHHHHTTCCCH CS
         AAA   1 vllyGppGtGKTllakavakel......gve.........fleisgsellskyvgesekkirelfkeakeka....kpsilfiDEidalaksrsgsese 80 
                 ++l+GppG+GKT+la+   ke+      g +         ++e+s+        +++ +++r++f++ak++     + ++lfiDEi++++k +      
  CCD25689.1 179 MILWGPPGVGKTSLARLFTKEAsavsssG-SkderpvhywMIETSA-------TKANTQELRGIFEKAKKEFqltrRRTVLFIDEIHRFNKVQ------ 263
                 79*******************83333321.0233333332344444.......44669**********9887899666************999...... PP

                 HHHHHHHHHHHHHHHTTTSSSTEEEEEEESS..GGGSTHHHHSTTSSEE CS
         AAA  81 eeervvnqLlteldgvkkkeskvivigatnr..pdkldpallrgRfdrk 127
                      ++ Ll+++++ +      i+igat++    +l++al+ +R+++ 
  CCD25689.1 264 -----QDLLLPHVENGDI-----ILIGATTEnpSFQLNNALI-SRCQVF 301
                 .....******9998755.....******9988889999999.9**986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 6.6
                 HHHHTSTSEEEEEETGGGHHHHH CS
         AAA  52 eakekakpsilfiDEidalaksr 74 
                 +a++++ ++++ + ++  ++k++
  CCD25689.1 383 TAESEE-KKVITLNDVRDIIKNN 404
                 344443.6889898888888887 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   3.3e-14     3e-11       1     126 [.     145     288 ..     145     296 .. 0.72

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 3.3e-14
      RuvB_N   1 lrPksleeyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsg...Pv....le......kagdlaalltnlee.. 84 
                 lrP++l+ey+gq+++ ++ k  +     r+  +  ++l GpPG+Gkt+la++ +ke  +   + s    Pv    +e      ++++l +++ + ++  
  CCD25689.1 145 LRPQTLREYVGQQHILSQEKGPLF-QYIRQGIIPSMILWGPPGVGKTSLARLFTKEASAVSSSGSKderPVhywmIEtsatkaNTQELRGIFEKAKKef 242
                 8**************998887665.467999999********************998766554443222332222441111114578999987654312 PP

      RuvB_N  85 .....kdvlfideihrlsraveevlysamedfrldivigkGpsarsi 126
                      + vlfideihr++++ +++l + +e+  + i+ig  +   s 
  CCD25689.1 243 qltrrRTVLFIDEIHRFNKVQQDLLLPHVENGDI-ILIGATTENPSF 288
                 2222278***********************9887.666666555554 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   4.2e-11   3.8e-08       5     130 ..     179     311 ..     177     312 .. 0.83

  Alignments for each domain:
  == domain 1  score: 33.4 bits;  conditional E-value: 4.2e-11
      AAA_14   5 lvitGaRrvGKTtllkqlikell.......vkkesilyinldderdkkladpekllelileklke.....ekktylflDEiqevpewekalkslvdegk 91 
                 +++ G+  vGKT l++ + ke          +++ + y  +++  +k+++++   l+ i+ek+k+     +++t+lf+DEi++ +++++ l   +   +
  CCD25689.1 179 MILWGPPGVGKTSLARLFTKEASavsssgsKDERPVHYWMIETSATKANTQE---LRGIFEKAKKefqltRRRTVLFIDEIHRFNKVQQDLLLPHV--E 272
                 6889***********9999999999999987888888888888777655544...45555553333667789**************9998765555..4 PP

      AAA_14  92 nldvivtGSnskllskeiatslagrvaeielyplsfaEf 130
                 n+d+i+ G    + s ++++ l  r +++ l  ls +E+
  CCD25689.1 273 NGDIILIGATTENPSFQLNNALISRCQVFVLEKLSTNEM 311
                 58**********************************997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     1e-06   0.00091      19      50 ..     171     202 ..     165     225 .. 0.78
   2 !    7.7   0.1    0.0048       4.3     118     155 ..     230     268 ..     219     275 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1e-06
      AAA_16  19 vrsgrpelvllsGesGvGKsslvrellralek 50 
                 +r+g  ++++l G++GvGK+sl+r + +++++
  CCD25689.1 171 IRQGIIPSMILWGPPGVGKTSLARLFTKEASA 202
                 56777799******************997764 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0048
      AAA_16 118 rllellkrllallsrderplvlvlDdlqwadeaslql.l 155
                  l+  + ++ +  + ++r +vl++D+++++   +++l l
  CCD25689.1 230 ELRGIFEKAKKEFQLTRRRTVLFIDEIHRFNKVQQDLlL 268
                 4555555555333444556*****************955 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1       1.7   1.5e+03      39      84 ..     109     156 ..      83     168 .. 0.51
   2 !   24.0   0.2   4.3e-08   3.9e-05       7     109 ..     178     264 ..     177     284 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 1.7
      AAA_22  39 rpevvfvtlpsstsskdllrellralglelka......erlsseellealeq 84 
                 + ++  v++++s+    + ++l +++ + +k+      erl+ + l+e++ q
  CCD25689.1 109 STSTTGVNATQSS----IESKLKEEIAVLKKSahlplsERLRPQTLREYVGQ 156
                 3333345555555....44444444444333344444447777777754433 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 4.3e-08
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrs 105
                 +++++G++G+GKT l+r +++++               v  ++s++ + +  ++ +    ++++  ++++ ++e+  + ++ ++++ +l iDE+++++ 
  CCD25689.1 178 SMILWGPPGVGKTSLARLFTKEAS-------------AVSSSGSKDERPVHYWMIETSATKANT--QELRGIFEKAKKEFQLTRRRTVLFIDEIHRFN- 260
                 5799*****************973.............455566667788877887777766666..7888888555555555555589******9994. PP

      AAA_22 106 eeal 109
                 + + 
  CCD25689.1 261 KVQQ 264
                 2222 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.1e-08   1.9e-05       2     101 ..     179     283 ..     178     329 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 2.1e-08
                 EEEE--SSSSHHHHHHHGGGGB..........S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHH CS
       AAA_5   2 vlLvGppGtgKselaerlaaal..........nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslle 90 
                 ++L GppG+gK++la+ + +            +r+v+y ++  + t+++ +  r i     +  ++++    r+  +l++DE++r ++  ++ Ll+  e
  CCD25689.1 179 MILWGPPGVGKTSLARLFTKEAsavsssgskdERPVHYWMIETSATKANTQELRGI----FEKAKKEFQ-LTRRRTVLFIDEIHRFNKVQQDLLLPHVE 272
                 79***************988777789*****99********999988776655555....333444443.44799*********************999 PP

                 SSEEE..-SSS CS
       AAA_5  91 errllleegge 101
                 +  + l   ++
  CCD25689.1 273 NGDIILIGATT 283
                 98776554444 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   9.2e-08   8.2e-05      25     123 ..     166     267 ..     143     269 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 9.2e-08
        TniB  25 eLleypkrkrmpnlllvGdsnnGKtmivekFarlhppekd.edaekvpv..lvvqappkpdekrlyaaiLealgaplkararvskleqqvlrllrelkv 120
                  L++y ++  +p+++l+G++ +GKt++++ F+++ ++ ++  +++++pv  +++++  +  + +  + i+e+ +++++ ++r + l  + ++ +++++ 
  CCD25689.1 166 PLFQYIRQGIIPSMILWGPPGVGKTSLARLFTKEASAVSSsGSKDERPVhyWMIETSATKANTQELRGIFEKAKKEFQLTRRRTVLFIDEIHRFNKVQQ 264
                 5899999999**********************9998775425556666622677777666666667889999988888888777777777777777776 PP

        TniB 121 rvL 123
                  +L
  CCD25689.1 265 DLL 267
                 665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.1e-06     0.001      25     154 ..     179     311 ..     169     323 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.1e-06
                      EEEECSTTSSHHHHHHHHHH.......HSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHT.TTSEEEEETGGGS-HHHH CS
  Sigma54_activat  25 vlitGesGtGKellaraihe.......askrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfeka.dgGtlfLDeigelplelQ 110
                      +++ G  G+GK+ lar+  +       + +++e+p+    +   +++  ++eL    +G F  A+ke    f+ +    +lf+Dei++++   Q
       CCD25689.1 179 MILWGPPGVGKTSLARLFTKeasavssSGSKDERPVHYWMIETSATKANTQEL----RGIFEKAKKE----FQLTrRRTVLFIDEIHRFNKVQQ 264
                      56789999999999998877556554322222333333222222333334444....5567666654....443314679************** PP

                      HHHHHHHHHSEEESBTSSSE...EE--EEEEEEESS-HHHHHHTTSS CS
  Sigma54_activat 111 ekLlrvlqegevervGsske...ikvdvriiaatnedleeaveegkf 154
                        Ll  +++g +  +G+++e    +++  +i+  +  + e+++++++
       CCD25689.1 265 DLLLPHVENGDIILIGATTEnpsFQLNNALISRCQVFVLEKLSTNEM 311
                      ****************8865112455666666666666555555555 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   5.3e-05     0.047      24     150 ..     178     292 ..     176     313 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 5.3e-05
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllpplseeealevakiasvagkkeeekllkrrpfraphhsaskaalvGggskpkpGeislahnGvLfLDElpefkr 120
                   +++l GppG GKt la+ +++           e+++++s  +  ++e+ ++    ++    a ++ l G  +k+k+      ++ vLf+DE+  f++
    CCD25689.1 178 SMILWGPPGVGKTSLARLFTK-----------EASAVSSSGS--KDERPVHYWMIETSATKANTQELRGIFEKAKKEFQLTRRRTVLFIDEIHRFNK 261
                   58999********99986653...........3333333322..44445555555555555666666666655555333334678999999999999 PP

  Mg_chelatase 121 kvlevLRePledgevtisraka.kvefparf 150
                      + L   +e+g + +  a++ + +f  + 
    CCD25689.1 262 VQQDLLLPHVENGDIILIGATTeNPSFQLNN 292
                   9999999999999987665543044555555 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.026        23      12      32 ..     178     198 ..     173     215 .. 0.81
   2 !   11.3   0.0   0.00035      0.31      92     137 ..     232     281 ..     212     288 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.026
      AAA_19  12 vllvtaGpGtGKTrvlkhiva 32 
                  +++ ++pG GKT + +   +
  CCD25689.1 178 SMILWGPPGVGKTSLARLFTK 198
                 5899*********98766555 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00035
      AAA_19  92 e....eaeeekklqeee.llivDEfqdvdelqyrLlkallgekkklllvGD 137
                 +    +a++e +l+++  +l++DE+   +++q+ Ll   +++++ ++l+G 
  CCD25689.1 232 RgifeKAKKEFQLTRRRtVLFIDEIHRFNKVQQDLLLPHVENGD-IILIGA 281
                 344435566667767777***********999999999996667.***996 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     2e-05     0.018      49     118 ..     178     257 ..     163     273 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgvea.......vraglsvlfvrvedLveelkrarrdgklaralkrl...lkvdllilDdlg 118
                 +++l Gp+GvGK+ la  + +ea        +++  v +  +e   ++ ++++  g +++a k++    + ++l +D++ 
  CCD25689.1 178 SMILWGPPGVGKTSLARLFTKEAsavsssgSKDERPVHYWMIETSATKANTQELRGIFEKAKKEFqltRRRTVLFIDEIH 257
                 589************97665554111111156777899999999999999999998777766554111566999999985 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.8e-05     0.034       4      26 ..     178     200 ..     177     267 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.8e-05
      AAA_24   4 kiliyGpsgiGKTtlakelgpkp 26 
                 +++++Gp+g+GKT+la+ +++++
  CCD25689.1 178 SMILWGPPGVGKTSLARLFTKEA 200
                 689**************993333 PP

>> hGDE_central  Central domain of human glycogen debranching enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1     4e-05     0.036      70     187 ..     203     318 ..     194     320 .. 0.80
   2 ?   -3.3   0.0       6.2   5.6e+03     111     111 ..     383     383 ..     332     439 .. 0.49

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 4e-05
                   EEECTEEEEEEEEEEEEE-S..-.----SSEE----EEEE.E----EEEE.......ETTTEEEEE--.S---SSEEEEEEEEETT--STHHHHHCS CS
  hGDE_central  70 iklsgtikevlleaslevkskkeeykkdekfinGlpsklkeelkleevkvlkieevedeeeesvievefenfppGsvvvfetelsevdekldefaks 166
                   ++ sg+++e  + + + ++s   + k +++ ++G+ +k k+e++l++  ++ + ++ ++ ++ ++++ + + + G ++++  + ++ + +l+++  s
    CCD25689.1 203 VSSSGSKDERPVHYWMIETS---ATKANTQELRGIFEKAKKEFQLTRRRTVLFIDEIHRFNKVQQDLLLPHVENGDIILIGATTENPSFQLNNALIS 296
                   55666666666666665555...6899999*****************9999999988666999999999************8877655566665555 PP

                   SHHH.HCTT--TTHHHHHH--B CS
  hGDE_central 167 elke.alsklslvdlnvvLyrc 187
                   + +  +l+kls+ ++  vLyr+
    CCD25689.1 297 RCQVfVLEKLSTNEMCIVLYRA 318
                   5554389*************97 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 6.2
                   E CS
  hGDE_central 111 e 111
                    
    CCD25689.1 383 T 383
                   2 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   5.6e-05      0.05       2      44 ..     180     224 ..     179     289 .. 0.66

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 5.6e-05
      AAA_18   2 lltGtpGvGKttlakeLskrl.gf.gvnlrdvakenglllevdpe 44 
                 +l G+pGvGKt+la+   k+  ++ +  ++d  + +++ +e  + 
  CCD25689.1 180 ILWGPPGVGKTSLARLFTKEAsAVsSSGSKDERPVHYWMIETSAT 224
                 688**************9997233544444444444444444433 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0    0.0001      0.09      15      76 ..     180     250 ..     177     380 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 0.0001
                 EEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.........B-HHHCCHCEEEE-SS--S-TTSBH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpteGeilldgkdlke.........qeleslrkeigvlpqepqlfpeltv 76 
                  + G+ G GK++L++l++++ +  + +   d++++++          ++++lr  ++  ++e ql ++ tv
  CCD25689.1 180 ILWGPPGVGKTSLARLFTKEASAVSSSGSKDERPVHYwmietsatkANTQELRGIFEKAKKEFQLTRRRTV 250
                 689*******************9777776788888887777733333444444444444444444444443 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.37   3.3e+02      27      47 ..     179     199 ..     155     208 .. 0.85
   2 ?    9.8   0.2   0.00081      0.72     116     146 ..     226     261 ..     196     285 .. 0.63

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.37
                 EEEEESTTSTHHHHHHHHHHH CS
      ResIII  27 glikmaTGtGKTlvaaklier 47 
                 ++++ + G+GKT +a  ++++
  CCD25689.1 179 MILWGPPGVGKTSLARLFTKE 199
                 68999*******998766665 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00081
                 HTH..............HHHTTT-S.EEEEETGGGTTS CS
      ResIII 116 adseee......eeeseellrdrfd.viiiDEaHrlga 146
                 a+   +      e++++e++ +r   v++iDE Hr+++
  CCD25689.1 226 ANT--QelrgifEKAKKEFQLTRRRtVLFIDEIHRFNK 261
                 222..235566655555555444445**********98 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00016      0.14       5     108 ..     178     276 ..     175     310 .. 0.75
   2 ?   -3.2   0.0       8.9   7.9e+03     100     115 ..     358     373 ..     347     390 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00016
                 -EEEE--TTSSHHHHHHHHHHHTT-..........-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTSEEEEETGGG-------------HHHHH CS
       AAA_2   5 silllgptgvGktelakalaellfv......kkekkliradaselleeeevehlvsrligappgyvgaeegGivllDEidKihpkessgadvSregVqr 97 
                 s++l gp gvGkt la+   +  ++      k+e+++      + +++ + ++l   ++ a++  +    + ++++DEi +  +            Vq+
  CCD25689.1 178 SMILWGPPGVGKTSLARLFTKEASAvsssgsKDERPVHYWMIETSATKANTQELRGIFEKAKKEFQLTRRRTVLFIDEIHRFNK------------VQQ 264
                 67899*********9998888777778888766666554443334443355666666777777777888888*********999............888 PP

                 HH.HHHHH--EE CS
       AAA_2  98 dL.Lqileggtl 108
                 dL L+ +e+g +
  CCD25689.1 265 DLlLPHVENGDI 276
                 752688888876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 8.9
                 HHHHH--EE------- CS
       AAA_2 100 Lqileggtltdkqgrk 115
                 L+ile+ ++++ q++k
  CCD25689.1 358 LNILEKVEISTRQDDK 373
                 6899999999888754 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00034       0.3       2      26 ..     180     204 ..     179     264 .. 0.83
   2 ?   -2.9   0.0       9.8   8.8e+03      78      87 ..     526     535 ..     504     565 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00034
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl 26 
                   +l+Gp+g+GK++la+ ++k+ +  +
    CCD25689.1 180 ILWGPPGVGKTSLARLFTKEASAVS 204
                   799*************999988555 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 9.8
  RNA_helicase  78 sstpyplnma 87 
                   + ++y l   
    CCD25689.1 526 NENKYSLASS 535
                   3333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1109  (0.0618551); expected 358.6 (0.02)
Passed bias filter:                      624  (0.0348039); expected 358.6 (0.02)
Passed Vit filter:                        82  (0.0045736); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4156.17
//
Query:       CCD25690.1  [L=573]
Description: hypothetical protein NDAI_0F03720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.3e-89  298.9  31.4    8.7e-89  298.6  31.4    1.0  1  Glyco_transf_22  Alg9-like mannosyltransferase family
  ------ inclusion threshold ------
      0.085   12.7   0.1       0.23   11.3   0.1    1.7  1  UPF0139          Uncharacterised protein family (UPF0139)


Domain annotation for each model (and alignments):
>> Glyco_transf_22  Alg9-like mannosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.6  31.4   9.7e-93   8.7e-89       3     417 .]      11     420 ..       9     420 .. 0.88

  Alignments for each domain:
  == domain 1  score: 298.6 bits;  conditional E-value: 9.7e-93
  Glyco_transf_22   3 fllllalrlllalltqtsfdpDEffqslEvahklvfgkgtltWEyspkygiRSylfllllalpyrllaelv...adskiavlyapRlllallsa 93 
                      ++llla rl l  + +++ d+DE+f+++E+++ lv+g g++tWEysp+y+iRS++fl  l+++++++++ +   +  + + +y++R++l+l+s+
       CCD25690.1  11 IVLLLASRLYLQPIYSLISDCDETFNYWEPLNLLVRGFGKQTWEYSPEYSIRSWAFLSPLYVLLYPFNKYLvahNLPSSWNFYLIRIFLGLVSV 104
                      5677777877666666666*************************************9999988888887651115567788************* PP

  Glyco_transf_22  94 lidyylfravcrkygseiakialllslsswglfvfstrtfsnslemlltsialyllsellsrenksssnekylvavlliavlavliRptsallw 187
                      +++++ +r + r+++ ++a+i+l++++++ g+f++s+++++++l+m+l++  + + +++ls++++ ++    +  + + +++++l++p++++l+
       CCD25690.1 105 VLEIKAYREIRRTLNGQVANIWLFFQIFNPGWFHASVELLPSTLAMVLYLGSIKHTLRYLSTKSTPNF----VASLTFNFLSSILGWPFVLVLS 194
                      *********************************************************99966666555....5888889999************ PP

  Glyco_transf_22 188 lplvlflllrlvkkrsktflfliialvllvlllvlvlviliDslfYgkfvftplnflkyNvl....snlsslyGvhPwyfYllqnlpnilgvll 277
                      lpl++++l  + ++   t+  ++++  +lv +l +++vi iDs fYgk++ + +n+l yNvl    +++++++Gv+Pw +Y+ + ++n+ +++l
       CCD25690.1 195 LPLCFQYL--FTHRIITTI--RTVFDSSLVIVLLTAIVIGIDSAFYGKITPVSWNILSYNVLntteESGPNIFGVEPWNYYIQNLILNFPIPVL 284
                      ********..999999999..99999999999999***************************999999************************** PP

  Glyco_transf_22 278 lavllgllvllsrkvsrlllllltilltLlvysllpHKElRFllpvlPlillsaavlltrls........resakvskklsllvllllfnvvla 363
                      +++++g+++       +l+ l+l ++l++++++ +pHKE+RF++p++++i+lsa+++l ++         ++ ++  k+l+ l++ll +  +++
       CCD25690.1 285 FFAIIGVFHR------SLWTLWLSLVLWIAIFTKQPHKEERFMYPIYSVITLSASIGLYNVLktvkklriNNIKCITKSLKWLTILLTALQAIS 372
                      *********9......489******************************************9666666553333333335667777888899** PP

  Glyco_transf_22 364 lllglvhqagvillvevmseleetkrknrkekketssvyvlkecyrtPsssylh 417
                      ++++l ++++++l  + +++ +  +     +k++ +++++++e+y++P s++l+
       CCD25690.1 373 RTIALTKNYTAPL--KLFDQYNRIA----SNKDSLTNICMGREWYHYPNSFFLP 420
                      ************4..5555555554....2347899****************96 PP

>> UPF0139  Uncharacterised protein family (UPF0139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.6e-05      0.23      36      82 ..     284     332 ..     279     344 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.6e-05
     UPF0139  36 mifsllglmlklkwcaWvalvcslisfanskssd..dlkqilssfmlsv 82 
                 + f+++g++ +  w+ W++lv+ ++ f+    ++   +  i s ++ls 
  CCD25690.1 284 LFFAIIGVFHRSLWTLWLSLVLWIAIFTKQPHKEerFMYPIYSVITLSA 332
                 579************************9987777223456677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 4078.18
//
Query:       CCD25691.1  [L=432]
Description: hypothetical protein NDAI_0F03730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.8e-178  591.9   0.0   7.7e-178  591.7   0.0    1.0  1  Adenylsucc_synt  Adenylosuccinate synthetase
  ------ inclusion threshold ------
       0.26   11.5   0.4        1.1    9.4   0.0    2.2  3  DUF1033          Protein of unknown function (DUF1033)


Domain annotation for each model (and alignments):
>> Adenylsucc_synt  Adenylosuccinate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  591.7   0.0  8.6e-182  7.7e-178       2     418 ..       4     427 ..       3     428 .. 0.97

  Alignments for each domain:
  == domain 1  score: 591.7 bits;  conditional E-value: 8.6e-182
                      EEEE-SSS-S-HHHHHHHHHTT-SEEEE-SB-TTSSEEEEETTEEEEESSS-GGGGSTT-EEEE-TTBEE-HHHHHHHHTTSS-TT......TE CS
  Adenylsucc_synt   2 vvvGaqwGDEGKGkivDllaeeadvvvRfqGGanAGHtvvvdgkkyklhllpSGilnpgvvnviGngvvvdpealleEieeleakgvelskerl 95 
                      vv+G+qwGDEGKGk+vDll  ++d+v+R++GG+nAGHt++vdg ky++h+lpSG++np+++n++Gngvv++++++++E+e+leakg+++++erl
       CCD25691.1   4 VVLGSQWGDEGKGKLVDLLVGKYDIVARCAGGNNAGHTIIVDGVKYDFHMLPSGLVNPNCQNLLGNGVVIHVPSFFKELETLEAKGLNNCRERL 97 
                      8********************************************************************************************* PP

                      EEETTSEE--HHHHHHHHHHHHH.....----------TTHHHHHHHHHTT---BGGGGGS.....HHHHHHHHHHHHHHTHHHHHHT...T-- CS
  Adenylsucc_synt  96 lisdrahlvlpyhkalDkleeaa.....kgkkkiGtTkkGiGpayadkvarrgirvgdlld.....eeeleeklekllelknkllekldkeele 179
                      ++s+rahlv+++h+  Dkl+e++     k+ k+iGtT+kGiGp+y++k++r+g+rv++l++     ++e+  k+++l+e +++ +  +   e++
       CCD25691.1  98 FVSSRAHLVFDFHQVTDKLRENElsgrsKDGKNIGTTGKGIGPTYSTKASRSGLRVHHLVNdnpgaWDEFVVKYKRLVETRKQRYGGF---EYD 188
                      **********************9988765567****************************6567778889999999999888665554...689 PP

                      ---HHHHHHHHHHHHGGGEE-HHHHHHHHHHTT--EEEE--S-GGG-TTTSSTTSS-SS--SHHHHHHHTT--GGGEEEEEEEEESSEEESSSS CS
  Adenylsucc_synt 180 veelleellkyaerlkpyvvdtvallnealkegkkvLfEGaqgtllDidhGtYPfvTsSnttaggaltglglapkkidevlgvvKAyttrvGeG 273
                      ve+ l+e++ky+++lkp+vvd+v ++++a++e+kk+L+EGa++++lDid+GtYP+vTsSnt +gg++tglg++p++id+v+gvvKAyttrvGeG
       CCD25691.1 189 VEAKLAEYKKYRDALKPFVVDSVVFMHKAIQENKKILVEGANALMLDIDFGTYPYVTSSNTGIGGVVTGLGIPPRTIDKVYGVVKAYTTRVGEG 282
                      99999999************************************************************************************** PP

                      --TTB--SHHHHHHHHHTT-B-TTT--B-EEE-EEHHHHHHHHHHHT-SEEEEE-GGGGTT-SEEEEEEEEEETTEEESS--S.....-GEEEE CS
  Adenylsucc_synt 274 pfptelkdevgeklrekGkEfgtttgrpRrcGwlDlvllryavrvngvtelaltklDvldgldeikvcvaYkldgkeldefpasleelekvepv 367
                      pfpte  +e+gekl+++G+Efg+ttgr+RrcGwlDlv+l+y+  +ng+t+l++tklDvld+++ei v+++Y+++gk ld fp++l +l +v+++
       CCD25691.1 283 PFPTEQLNEEGEKLQTIGAEFGVTTGRKRRCGWLDLVVLKYSSLINGYTSLNITKLDVLDTFKEIPVGISYSIKGKALDLFPEDLMTLGEVDVE 376
                      *****88*************************************************************************************** PP

                      EEEEE--.S--TT---GGGS-HHHHHHHHHHHHHHTS-EEEEE-SSSTT-E CS
  Adenylsucc_synt 368 yeelpgWkedisgvrsfedlpenakkyvefieellgvpvkiisvGpereqt 418
                      y +lpgW++di++++++e+lpenakky+++ie+++g+pv+++++Gp re++
       CCD25691.1 377 YVTLPGWEQDITKITEYEQLPENAKKYLKYIEDFVGIPVEWVGTGPARESM 427
                      *************************************************98 PP

>> DUF1033  Protein of unknown function (DUF1033)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         1   8.9e+03      74     105 ..      91     122 ..      84     130 .. 0.72
   2 ?   -1.6   0.0      0.32   2.9e+03      20      40 ..     185     206 ..     182     222 .. 0.75
   3 ?    9.4   0.0   0.00013       1.1      17      42 ..     380     405 ..     369     412 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1
     DUF1033  74 eecdedlqqykslallkdkqeipkekkreaye 105
                 ++c e l       l+ d ++++++ ++++++
  CCD25691.1  91 NNCRERLFVSSRAHLVFDFHQVTDKLRENELS 122
                 67888888888888888888888876666655 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.32
     DUF1033  20 Weediv.eekefdefeealkyy 40 
                 +e d+  + +e++++++alk +
  CCD25691.1 185 FEYDVEaKLAEYKKYRDALKPF 206
                 5667751457999999999877 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00013
     DUF1033  17 legWeediveekefdefeealkyykk 42 
                 l gWe+di++ +e++++ e  k y k
  CCD25691.1 380 LPGWEQDITKITEYEQLPENAKKYLK 405
                 779**************988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       329  (0.0183502); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3315.04
//
Query:       CCD25692.1  [L=92]
Description: hypothetical protein NDAI_0F03740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-40  135.3   8.2    6.2e-40  135.2   8.2    1.0  1  Ribosomal_L37ae  Ribosomal L37ae protein family
     0.0011   18.8   0.5     0.0012   18.6   0.5    1.2  1  Rep_fac-A_C      Replication factor-A C terminal domain
     0.0059   17.0   0.8        1.1    9.8   0.2    2.3  2  zf-H2C2_2        Zinc-finger double domain
  ------ inclusion threshold ------
      0.011   15.7   3.1      0.018   15.0   3.1    1.4  1  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
      0.024   14.7   1.8      0.038   14.0   1.8    1.5  1  Elf1             Transcription elongation factor Elf1 like
      0.059   12.9   1.2       0.41   10.2   0.1    2.2  2  Sgf11            Sgf11 (transcriptional regulation protein)
       0.12   12.7   2.9       0.33   11.3   2.8    1.7  1  C1_2             C1 domain
       0.16   11.8   2.8        0.5   10.2   0.3    2.2  2  CarbpepA_inh     Carboxypeptidase A inhibitor
       0.56   11.0   6.5         14    6.4   2.4    2.4  3  MRNIP            MRN-interacting protein
       0.69   10.0   5.3        7.1    6.7   0.4    2.2  2  zf-BED           BED zinc finger
        1.9    8.5   5.5        6.1    6.8   5.5    2.0  1  zf-C4_ClpX       ClpX C4-type zinc finger


Domain annotation for each model (and alignments):
>> Ribosomal_L37ae  Ribosomal L37ae protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   8.2   3.8e-43   6.2e-40       1      84 [.       4      87 ..       4      88 .. 0.99

  Alignments for each domain:
  == domain 1  score: 135.2 bits;  conditional E-value: 3.8e-43
                     XXXXXX-GGGGTTSS-HHHHHHHHHHHHHHHS-BEESSSSSSEEEEEETTEEEETTTTEEEE-BSSSSS-HHHHHHHH-XXXXX CS
  Ribosomal_L37ae  1 rtkkvgiaGkygtrYGaslrkrvkkieisqhakytCpfcgktkvkRkavgiwkCkkcgktvaGgAytpettsaktvksairrlk 84
                     rtkkvgi+Gkyg+rYG+slr++vkk+e++qha+y C+fcgk++vkR ++giw+Ck+c+ktvaGgAy ++t++a+tv+s+irrl+
       CCD25692.1  4 RTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVKRGSAGIWNCKSCNKTVAGGAYAVSTAAAATVRSTIRRLR 87
                     79********************************************************************************97 PP

>> Rep_fac-A_C  Replication factor-A C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.5   7.6e-07    0.0012       9      51 ..      27      68 ..      20      81 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7.6e-07
                 EEEETTTTEEEB--STT---B-EEE.TTTEEEETTTTEEESS-- CS
  Rep_fac-A_C  9 sfikkdnlvYkACpsedCnkKvvee.edgewrCekCdkeveepk 51
                 ++++ ++ +   C+   C kK v++ + g w C+ C+k+v+   
   CCD25692.1 27 KKLEVQQHARYDCS--FCGKKTVKRgSAGIWNCKSCNKTVAGGA 68
                 55555544444588..8********666**********987555 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.2    0.0007       1.1      14      25 ..      36      47 ..      26      48 .. 0.84
   2 ?    5.8   0.0     0.013        21      15      23 ..      55      63 ..      49      65 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0007
   zf-H2C2_2 14 pyeCplCdkaFk 25
                +y C++C+k+++
  CCD25692.1 36 RYDCSFCGKKTV 47
                699******987 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.013
   zf-H2C2_2 15 yeCplCdka 23
                ++C++C+k+
  CCD25692.1 55 WNCKSCNKT 63
                79******8 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   3.1   1.1e-05     0.018      20      45 ..      38      62 ..      31      63 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.1e-05
  Zn_Tnp_IS1595 20 vCPhCgsrkayriktrglfqCkeCrk 45
                    C +Cg++++ r ++ g + Ck+C+k
     CCD25692.1 38 DCSFCGKKTVKRGSA-GIWNCKSCNK 62
                   5*****999999998.********98 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   1.8   2.3e-05     0.038      10      56 ..      25      65 ..      15      91 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 2.3e-05
        Elf1 10 rkkkkkkklptkFdCpfCnheksvevkldkkekiaevsCkvCgesfe 56
                + kk   +   ++dC fC+++ +      k+ + ++ +Ck+C++++ 
  CCD25692.1 25 QVKKLEVQQHARYDCSFCGKK-T-----VKRGSAGIWNCKSCNKTVA 65
                34555555899**********.3.....35668899******99654 PP

>> Sgf11  Sgf11 (transcriptional regulation protein)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.17   2.7e+02       5      13 ..      37      45 ..      34      48 .. 0.85
   2 ?   10.2   0.1   0.00025      0.41       6      20 ..      56      70 ..      54      71 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.17
                EE-TTTSSE CS
       Sgf11  5 vtCpnCgRq 13
                ++C  Cg++
  CCD25692.1 37 YDCSFCGKK 45
                79****985 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00025
                E-TTTSSEEEGGGHH CS
       Sgf11  6 tCpnCgRqiaasRFA 20
                +C+ C++++a++ +A
  CCD25692.1 56 NCKSCNKTVAGGAYA 70
                7***********999 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.8    0.0002      0.33      14      39 ..      32      61 ..      22      66 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
        C1_2 14 dssesfnCsaCgrk..idgff..YsCseCd 39
                ++++++ Cs Cg+k    g+    +C+ C+
  CCD25692.1 32 QQHARYDCSFCGKKtvKRGSAgiWNCKSCN 61
                578899********864444488***99*8 PP

>> CarbpepA_inh  Carboxypeptidase A inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.12   1.9e+02      24      34 ..      39      49 ..      38      52 .. 0.82
   2 ?   10.2   0.3   0.00031       0.5      20      44 ..      53      76 ..      51      78 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.12
                  --EE.EEEE-S CS
  CarbpepA_inh 24 CqwCdkltktg 34
                  C +C k+t+  
    CCD25692.1 39 CSFCGKKTVKR 49
                  99**9999865 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.00031
                  SSSS--EE.EEEE-SS--EEEEEES CS
  CarbpepA_inh 20 gitlCqwCdkltktgeGyvgsalsi 44
                  gi+ C  C ++t+ g+ y+ s+ ++
    CCD25692.1 53 GIWNCKSC-NKTVAGGAYAVSTAAA 76
                  9*******.9********9998765 PP

>> MRNIP  MRN-interacting protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.4      0.01        17      29      57 ..       7      35 ..       4      40 .. 0.84
   2 ?    1.6   0.5      0.27   4.4e+02      17      29 ..      33      45 ..      31      50 .. 0.80
   3 ?    6.4   2.4    0.0087        14       7      30 ..      39      64 ..      36      89 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.01
       MRNIP 29 kqslkkvygsgsgkdcrqlVqklnlkkge 57
                k  ++  yg   g  +r++V+kl ++++ 
  CCD25692.1  7 KVGITGKYGVRYGSSLRRQVKKLEVQQHA 35
                666777899999***********999876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.27
       MRNIP 17 KskkwkCkvCnek 29
                   ++ C  C++k
  CCD25692.1 33 QHARYDCSFCGKK 45
                56789******98 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0087
       MRNIP  7 CetfqvkqvkK..skkwkCkvCnekq 30
                C+    k vk+  ++ w+Ck Cn+  
  CCD25692.1 39 CSFCGKKTVKRgsAGIWNCKSCNKTV 64
                5555555555544788******9764 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.4    0.0044       7.1      13      29 ..      33      49 ..      26      54 .. 0.79
   2 ?    5.9   0.6    0.0078        13      15      29 ..      53      67 ..      50      82 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0044
                GSS--EETTTTEE---- CS
      zf-BED 13 keqkavCryCgkilsrg 29
                ++ +  C +Cgk++  +
  CCD25692.1 33 QHARYDCSFCGKKTVKR 49
                677889******99876 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0078
                S--EETTTTEE---- CS
      zf-BED 15 qkavCryCgkilsrg 29
                + + C+ C+k+ ++g
  CCD25692.1 53 GIWNCKSCNKTVAGG 67
                6799*******9998 PP

>> zf-C4_ClpX  ClpX C4-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.5    0.0037       6.1       3      18 ..      39      52 ..      37      65 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0037
  zf-C4_ClpX  3 CSFCgksesevkklIa 18
                CSFCgk+  +vk+  a
  CCD25692.1 39 CSFCGKK--TVKRGSA 52
                *****96..4555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       836  (0.0466284); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 725.28
//
Query:       CCD25693.1  [L=859]
Description: hypothetical protein NDAI_0F03750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-77  260.5  12.2    3.4e-77  259.1  12.2    1.8  1  POP1      Ribonucleases P/MRP protein subunit POP1
    3.7e-33  113.7   1.2    3.7e-33  113.7   1.2    2.1  2  POPLD     POPLD (NUC188) domain


Domain annotation for each model (and alignments):
>> POP1  Ribonucleases P/MRP protein subunit POP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.1  12.2   3.8e-81   3.4e-77       1     204 [.      57     294 ..      57     295 .. 0.94

  Alignments for each domain:
  == domain 1  score: 259.1 bits;  conditional E-value: 3.8e-81
        POP1   1 FvksrefEIkaleealkkskkasstraFQslPrklRRRtaSHnvkRvPkrlrarakremakdntptvearkrkk...kslskrkrlrlrtakkllrlaa 96 
                 F+ sr+fEIk+l+ a+++sk +sstr+FQ+lPrklRRRtaSHnv+R+Pkr+r+ra rem k+++++ ++r+ k+   ++l++ ++++lr++ kllrla 
  CCD25693.1  57 FILSRKFEIKQLQLAMHNSKLTSSTRVFQALPRKLRRRTASHNVRRIPKRMRNRALREMMKSDQQQITKRRPKNsktHGLTAAQLYKLRMSVKLLRLAG 155
                 899***********************************************************98887777776656689999***************** PP

        POP1  97 kkkakkalaak............................keekklnnkkgskdktkknklaeppkkkikylkrqkektWLpTHvwhaKRakmikrwgfa 167
                 k+++ k la +                            ++  klnnk+gs+d+t++nkla++pk++iky krq+ +tWLpTHvw+aKR++mikrwg++
  CCD25693.1 156 KSTSLK-LALPenitasncnirqkmkslktiikesknskSDVIKLNNKMGSYDNTGMNKLAPIPKGRIKYFKRQRFFTWLPTHVWNAKRSHMIKRWGYQ 253
                 *****9.6666799*********99999999887766543899******************************************************** PP

        POP1 168 iplsptqKcyrlthR....aaksrgavawDtSYmstieleg 204
                 ip+sptqKc+++thR    +a+s+ga+++D+S+m+t+++++
  CCD25693.1 254 IPWSPTQKCFKSTHRlgshSAASDGALCMDSSFMGTMIVND 294
                 *****************9999****************9986 PP

>> POPLD  POPLD (NUC188) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.7       1.4   1.3e+04      56      76 ..     112     132 ..     101     134 .. 0.73
   2 !  113.7   1.2   4.1e-37   3.7e-33       1      92 []     543     649 ..     543     649 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.4
       POPLD  56 eekeeeeeaeekwerkPpskR 76 
                   ++ ++++++  +r+P++ +
  CCD25693.1 112 LREMMKSDQQQITKRRPKNSK 132
                 556667777888999999876 PP

  == domain 2  score: 113.7 bits;  conditional E-value: 4.1e-37
       POPLD   1 gwdlilPwgwglpfwlsLvrvg.vrvgGlrerrqlalesgkpyfPddypdtkagekeekeeeeeaeek.werkPpskRvnysklg.............i 84 
                 +w+li+Pw+w lpfw++L+rv+ v++ Glr+ +ql +e+g++yfPddyp+tk g+ e++ +++e  +  w++kP sk+vny+k++             i
  CCD25693.1 543 DWVLIVPWFWLLPFWYQLNRVSrVYHTGLRQCQQLDFEEGRLYFPDDYPFTKIGYMENSLYKKETLQAkWQKKPVSKKVNYAKIKgihfnelpaftgeI 641
                 6***********************************************************999876666****************************** PP

       POPLD  85 gspFacdW 92 
                 g++F+cdW
  CCD25693.1 642 GDYFSCDW 649
                 ******** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1017  (0.0567237); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 5799.60
//
Query:       CCD25694.1  [L=204]
Description: hypothetical protein NDAI_0F03760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-84  280.4   0.0    6.8e-84  280.2   0.0    1.0  1  Ssu72     Ssu72-like protein


Domain annotation for each model (and alignments):
>> Ssu72  Ssu72-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.2   0.0   3.8e-88   6.8e-84       1     191 []       7     204 .]       7     204 .] 0.98

  Alignments for each domain:
  == domain 1  score: 280.2 bits;  conditional E-value: 3.8e-88
                 SEEEEEESSSSSHHHHHHHHHHHTT-EEEEEE-SSSEEEEESSTTSEEEE-TTS-HHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-SS--BGGG---. CS
       Ssu72   1 lkfavvcasnqnrsmeahkvLkkagfkvkSfGtgsavrLPgpsidkpnvyeFgtsyeeiyedLkskdkelyeanGllkmldrnrkiKkaPerwqeaeek 99 
                 lkf++vcasn+nrsme+hkvL++ag++v+S+GtgsavrLPg sidkpnvy Fgt+y++iy+dL s++ e y+anGll+mldrnrk+KkaPe+wq++++ 
  CCD25694.1   7 LKFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYPFGTPYNDIYNDLLSQSPERYKANGLLQMLDRNRKLKKAPEKWQTNTK- 104
                 69*********************************************************************************************887. PP

                 --SEEEESSHHHHHHHHHHHHHS--SS-EEEEEEEE---SSHHHHHHHHHHHHHHHHHHHT-SS........HHHHHHHHHHHHHHHHT--.EEEEEEE CS
       Ssu72 100 kfdvvitceervfdavvedllsreselnrpvhvinvdikDnheeAlvgakaileLakaleeaede.......leeevkeilaefeektkkl.llytvaf 190
                 +fd v+tceer+fdav+edl+ r+ +ln++vh+in+dikD++e+A++g+kail+La++l+e+ +e       +e+ +++ila ++++++kl lly+  f
  CCD25694.1 105 TFDFVFTCEERCFDAVCEDLMLRGGHLNQMVHIINIDIKDDNENAKIGGKAILKLADMLSEKVQEceesfipFEDIIMDILAIWQQDHPKLpLLYSPGF 203
                 *************************************************************999999************************9***9988 PP

                 E CS
       Ssu72 191 y 191
                 y
  CCD25694.1 204 Y 204
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1626.50
//
Query:       CCD25695.1  [L=427]
Description: hypothetical protein NDAI_0F03770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-85  285.3   0.0    6.4e-85  284.9   0.0    1.1  1  Peptidase_C54  Peptidase family C54


Domain annotation for each model (and alignments):
>> Peptidase_C54  Peptidase family C54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.9   0.0   3.6e-89   6.4e-85       6     275 ..       2     300 ..       1     301 [. 0.93

  Alignments for each domain:
  == domain 1  score: 284.9 bits;  conditional E-value: 3.6e-89
  Peptidase_C54   6 kdfesriwltYRkeFppieks.............................gltsDaGWGCmlRsgQmllaqalllhllgrdwrreeksek.keeet 71 
                    +d++sr+ +tYR++F+pi+++                             ++ +D+GWGCm+R+gQ+ll++al+l  lgrdwr  + +++ k +e+
     CCD25695.1   2 SDIKSRLNFTYRTRFKPIQRMsdgpspfhfsfilrenpintlenvisnpdCFFTDIGWGCMIRTGQSLLGNALQLRNLGRDWRFDD-NTDlKMTEK 96 
                    699****************999**************************************************************65.5566999** PP

  Peptidase_C54  72 yrkilslFlDkpsapfSihrlvkigk.slgkkvgeWfgPstvaqilkklvekakeeaglkvyvaqds.svvykddvkklakeskk..ekeekkwkp 163
                     ++i s+F+D+p++pfS+hr++++g   +gkk+geWfgP+++a+ +++lv+ +++e+g++ ++++ s  ++yk +v+++ +e ++  +++ +k k+
     CCD25695.1  97 SNEIASWFMDTPEKPFSLHRFISKGMqLSGKKPGEWFGPAATARSIQSLVH-EFPECGIDKCLISVSsGDIYKTEVEDVFNEGHTgeARNGQKDKT 191
                    **************************779**********************.899999977666665248******9877766554334444449* PP

  Peptidase_C54 164 vlilvplrlGldkvnpkyvealkellklkqsvGiiGGrpksslYfvgvqedkliyLDPHtvqeavedeaeseeelssfhckkprklsiskldpsll 259
                    +lil++++lG++++n  y+++++++l+ ++s+Gi+GGrp+sslYf+g+q+d+l+y+DPH  q++    ++++  ++++h++++ kls+ ++dps+l
     CCD25695.1 192 ILILLGVKLGIETINRCYWDSIRRILSSEYSIGIAGGRPSSSLYFFGYQGDELLYFDPHSPQPSY---DKNDLFYETCHTTNFGKLSLADMDPSML 284
                    *****************************************************************...6888999********************* PP

  Peptidase_C54 260 lgflckdeedfedlve 275
                    lg  ++ ++++e++++
     CCD25695.1 285 LGIQITGRKEWEQWQK 300
                    *************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3173.34
//
Query:       CCD25696.1  [L=788]
Description: hypothetical protein NDAI_0F03780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-09   38.1   3.7    3.2e-09   36.5   3.7    1.9  1  G-patch   G-patch domain
     0.0039   17.1   0.1      0.011   15.7   0.0    1.9  2  R3H       R3H domain
  ------ inclusion threshold ------
       0.15   11.8   0.6       0.45   10.3   0.6    1.9  1  S4        S4 domain


Domain annotation for each model (and alignments):
>> G-patch  G-patch domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   3.7   5.3e-13   3.2e-09       1      43 [.     738     781 ..     738     782 .. 0.96

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 5.3e-13
     G-patch   1 tsniGvkmLqkmGWkpGqGLG.kkeqGiaePieakikkdraGlG 43 
                 ++niG ++L+k GW  G+GLG   ++Gi+eP+ a  kk + G+G
  CCD25696.1 738 QENIGRRILEKLGWTSGEGLGpHGNKGISEPLMARMKKSKHGVG 781
                 58*******************999****************9998 PP

>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2         2   1.2e+04       2      17 ..     569     584 ..     568     591 .. 0.62
   2 !   15.7   0.0   1.8e-06     0.011       3      60 .]     615     672 ..     613     672 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2
                 HHHHHHHHHHHHHH-S CS
         R3H   2 fllrvekklaefvkdt 17 
                 +++ + +kl ++++d+
  CCD25696.1 569 TIETLQQKLHKRMDDK 584
                 6777777777777553 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.8e-06
                 HHHHHHHHHHHHH-S--EEE-----SHHHHHHHHHHHHSSEEEEEE--SS-SEEEEEE CS
         R3H   3 llrvekklaefvkdtgrslefppmssyeRriiHelaeaygleseSvGeepkRrvvvtk 60 
                 ++++ ++l+ f+k+ + + +fpp++++  + +   ae+yg +   vG+ ++ +v v+k
  CCD25696.1 615 VRNITDELELFLKRGKTTTTFPPLDPHGNKTVMKFAEHYGTKASKVGKANHTHVLVSK 672
                 67899*************************************************9987 PP

>> S4  S4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.6   7.5e-05      0.45      26      48 .]     707     729 ..     705     729 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.5e-05
                 TTEEETTEEE--TT-EE-TTCEE CS
          S4  26 GrVlVNGkvvkdpsyrVkpgDvi 48 
                  +V+V + +vk+ +y+Vk+g+++
  CCD25696.1 707 EHVRVEKIRVKSGKYQVKEGETV 729
                 59******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1561  (0.0870656); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.26s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 5272.62
//
Query:       CCD25697.1  [L=528]
Description: hypothetical protein NDAI_0F03790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.3e-43  146.7   1.3    4.3e-43  146.7   1.3    2.8  3  SID              Septation initiation
      2e-06   28.0  14.8      2e-06   28.0  14.8    3.4  3  Tropomyosin_1    Tropomyosin like
  ------ inclusion threshold ------
      0.093   10.2  31.8       0.21    9.0  16.7    2.1  2  DUF3584          Protein of unknown function (DUF3584)
       0.68    9.9   4.8       0.25   11.2   1.3    2.3  2  A1_Propeptide    A1 Propeptide
        1.8    8.8  13.3        1.4    9.1   1.6    2.9  3  PEP-utilisers_N  PEP-utilising enzyme, N-terminal
        2.1    8.4   5.1        1.6    8.8   0.9    2.7  3  PilJ             Type IV pili methyl-accepting chemotaxis tra
        4.2    7.3  35.8        1.3    8.9  12.5    3.3  3  SIKE             SIKE family


Domain annotation for each model (and alignments):
>> SID  Septation initiation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   3.3       2.4     6e+03      73     118 ..     168     213 ..     109     243 .. 0.57
   2 ?   -3.1   0.2       3.1     8e+03      93     129 ..     298     334 ..     289     340 .. 0.61
   3 !  146.7   1.3   1.7e-46   4.3e-43       2     134 ..     395     527 ..     394     528 .] 0.98

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.4
         SID  73 ylkyektlllkFanrlhyqlyneeidlkeftkeAyeqylktkdlee 118
                  l  e++ l+k  ++  +++ +e+ +l + +k+  e++ k+ ++ +
  CCD25697.1 168 SLIKENNALHKVHQEFSETMEQEKESLISANKSLEEKFDKQLEIAT 213
                 3444555555555555555555555555555555555554444444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.1
         SID  93 yneeidlkeftkeAyeqylktkdleeikhpLekcLee 129
                 ++ ei++ + +++  ++ ++  ++++ ++ ++k+Lee
  CCD25697.1 298 QEDEIKITKASDDLKQKSKQIDEFDKKNKSIRKVLEE 334
                 5556666666666666555566666666666666665 PP

  == domain 3  score: 146.7 bits;  conditional E-value: 1.7e-46
         SID   2 kkleGdksekitfeklkksrpditkelyesLkvdkvdsldlvelqNivKnlillleiPlsklskklpliaiylkyektlllkFanrlhyqlyneeidlk 100
                 ++++Gd++e+i++++++ ++ +it++l++++ +d+v+ ld ++l+NivK++++ll+iP+++l++k+++ia++l+yek+ll+kF+++lh+++++++ dl 
  CCD25697.1 395 RDIQGDAAERIKYDRYQLMKLGITEDLFKTYGIDEVEILDKISLENIVKRTMVLLNIPFNELNTKISRIAVFLRYEKPLLRKFVTELHMATFGTSADLI 493
                 789************************************************************************************************ PP

         SID 101 eftkeAyeqylktkdleeikhpLekcLeelykei 134
                 +++++A++q+++t+dl++i+hpL++cL++l++++
  CCD25697.1 494 YKANRATKQFNTTGDLTHIDHPLNRCLDKLLNQL 527
                 *******************************997 PP

>> Tropomyosin_1  Tropomyosin like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6  18.4         7   1.8e+04       5     105 ..     103     203 ..     100     206 .. 0.88
   2 !    7.5  12.9    0.0017       4.4       5      61 ..     187     244 ..     186     259 .. 0.88
   3 !   28.0  14.8   7.9e-10     2e-06      20     123 ..     301     400 ..     292     413 .. 0.87

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 7
  Tropomyosin_1   5 LkleaeeaqekaeeleekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkett 100
                    L+  ae+     +  e++ K l ++ ++   e+++  ++ ++le + ekl e+ k   +   e+e++ ++n+al++  q   e +e+  ++L +++
     CCD25697.1 103 LRKIAEDYNSLRNTSEHSTKLLTEQLKATRLELEKVREQYNVLETNHEKLIEENKIIPRLETENESLIKENNALHKVHQEFSETMEQEKESLISAN 198
                    5555666666677788889999999999999999999*************999999999999999******************************9 PP

  Tropomyosin_1 101 ekLre 105
                    + L+e
     CCD25697.1 199 KSLEE 203
                    99987 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0017
  Tropomyosin_1   5 Lkleaeeaqekaeeleekv.KeleqenlekeqeiksLtkknqqleeevekleeklkea 61 
                    +  e+e+     + leek  K+le  +l+ke+++k Lt+ nq l +++e++++k++  
     CCD25697.1 187 MEQEKESLISANKSLEEKFdKQLEIATLKKEEQLKTLTTENQFLKNQLEEMKKKISHL 244
                    667899998889999998669*******************************999865 PP

  == domain 3  score: 28.0 bits;  conditional E-value: 7.9e-10
  Tropomyosin_1  20 eekvKeleqenlekeqeiksLtkknqqleeevekleeklkeakekaeesekkktnnealtrkiqlLEeeleesdkkLkettekLretdvkaeelER 115
                    e k+ ++ ++ ++k ++i +  kkn+ + + +e++e++l+++k+++e+ ++       ++ ki+lLE++le++ ++L+et e +  + +++e+   
     CCD25697.1 301 EIKITKASDDLKQKSKQIDEFDKKNKSIRKVLEETETQLEKYKTENEDLKQG----KIFKSKIKLLEDDLEKTVETLNETCENMALAKAETEKWKM 392
                    45667889999********************************999887665....5799*************************99999999998 PP

  Tropomyosin_1 116 kvkaLeqe 123
                    k+++++  
     CCD25697.1 393 KIRDIQGD 400
                    88887654 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  16.7   8.3e-05      0.21     296     452 ..     103     257 ..      96     263 .. 0.86
   2 ?    7.0   7.2   0.00034      0.87     430     521 ..     312     403 ..     288     419 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 8.3e-05
     DUF3584 296 lrtledelkeaidelnqelsaakaklaakeselealeeqkkkyedadieklkadldqlpsirseleeleeeldaltekhqdvqekydrrkqkikeelee 394
                 lr+  ++ +  +++ +   + + ++l+a + ele++ eq++  ++ + ekl ++   +p +++e e l +e +al + hq+  e ++++k  + + ++ 
  CCD25697.1 103 LRKIAEDYNSLRNTSEHSTKLLTEQLKATRLELEKVREQYNV-LETNHEKLIEENKIIPRLETENESLIKENNALHKVHQEFSETMEQEKESLISANKS 200
                 556667777788888888888999999999999999999976.55778999999999999999999999999999999999999999999999999999 PP

     DUF3584 395 eleklkerleaireekdrlkaaieealealesqlrkqleaqkeelneeekelesrlse 452
                   ek +++le+   +k++++++   + + l++ql+ ++++++++l+  ++ + ++l+e
  CCD25697.1 201 LEEKFDKQLEIATLKKEEQLKTLTTENQFLKNQLE-EMKKKISHLEFGKEGFIKKLNE 257
                 99999999999999999999999999999999999.7888888888888888887776 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.00034
     DUF3584 430 kqleaqkeelneeekelesrlselklrldsatateEeleqieeadealekaqeelekaeaevealqaeeeqlrkkrdeadealqkaerrleq 521
                 kq+ +q+ e+ +++k +++ l+e +++l++ + ++E l+q ++++++++  +  lek  +  ++  ++ + ++++ ++ + + ++++  + +
  CCD25697.1 312 KQKSKQIDEFDKKNKSIRKVLEETETQLEKYKTENEDLKQGKIFKSKIKLLEDDLEKTVETLNETCENMALAKAETEKWKMKIRDIQGDAAE 403
                 48888999999999999999999999999999999999999999999999999999888888888888888888888877777766644444 PP

>> A1_Propeptide  A1 Propeptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.1   5.4e+03      23      29 .]     227     233 ..     227     233 .. 0.85
   2 ?   11.2   1.3    0.0001      0.25       7      28 ..     323     345 ..     323     346 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.1
                    HHHHHH- CS
  A1_Propeptide  23 eeFLkeh 29 
                    ++FLk++
     CCD25697.1 227 NQFLKNQ 233
                    89***85 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0001
                    EE---HHHHHHH.TT-HHHHHHH CS
  A1_Propeptide   7 kKvKSmRetLrE.kglLeeFLke 28 
                    kK KS+R+ L E +++Le +  e
     CCD25697.1 323 KKNKSIRKVLEEtETQLEKYKTE 345
                    799***************99866 PP

>> PEP-utilisers_N  PEP-utilising enzyme, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.5    0.0039        10      28     109 ..     116     191 ..      97     198 .. 0.78
   2 ?    2.2   0.7     0.076     2e+02      24      72 ..     182     232 ..     175     249 .. 0.71
   3 ?    9.1   1.6   0.00055       1.4      20      73 ..     312     365 ..     296     389 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0039
                      GHHHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHH.HHHHHT-HHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHTT CS
  PEP-utilisers_N  28 dveaelerleeAlekvreelealaekalgeeeaaifea.hlmlleDpelleeveerIregglnaeaAveevveefaaqfeald 109
                      + e+  + l+e l+++r ele+++e+       +++e+ h  l+e ++++ ++e++ + + ++  +A+++v +ef +++e+ +
       CCD25697.1 116 TSEHSTKLLTEQLKATRLELEKVREQY------NVLETnHEKLIEENKIIPRLETENE-SLIKENNALHKVHQEFSETMEQEK 191
                      456777889999999999999998555......3444439999999999999999887.8889999***********999865 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.076
                      -G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH..T-HHHHHHHHHHHHHHT- CS
  PEP-utilisers_N  24 veaedveaelerleeAlekvreelealaeka..lgeeeaaifeahlmlleD 72 
                        +e+ e+e e l +A + ++e++++  e a   +ee+ + +++  ++l+ 
       CCD25697.1 182 EFSETMEQEKESLISANKSLEEKFDKQLEIAtlKKEEQLKTLTTENQFLKN 232
                      456778999999999999999999995555565555567788887777765 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00055
                      -----G.GGHHHHHHHHHHHHHHHHHHHHHHHHHH..T-HHHHHHHHHHHHHHT-H CS
  PEP-utilisers_N  20 eeeeveaedveaelerleeAlekvreelealaeka..lgeeeaaifeahlmlleDp 73 
                      ++++ + ++ ++  + +++ le+++++le+ + +   l  ++ +if+  + lleD+
       CCD25697.1 312 KQKSKQIDEFDKKNKSIRKVLEETETQLEKYKTENedL--KQGKIFKSKIKLLEDD 365
                      34455556778888899999999999999987655442..4577***********5 PP

>> PilJ  Type IV pili methyl-accepting chemotaxis transducer N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.9   0.00061       1.6      19      95 ..     113     190 ..     112     208 .. 0.80
   2 ?   -0.8   0.1       0.6   1.5e+03      61      92 ..     311     343 ..     302     359 .. 0.65
   3 ?   -2.3   0.0       1.7   4.4e+03      44      68 ..     363     387 ..     345     398 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00061
        PilJ  19 lRMqsqRlakeallaaagaydaaearaqlretiaqfdrtlaalrlgdpapgllvpae....avraqleaveqlWqelkkpa 95 
                 lR  s   +k++++ + +      + +++re+ ++++++++ l + ++  + l +++    +  ++l++v+q+++e +++ 
  CCD25697.1 113 LRNTSEHSTKLLTEQLKAT---RLELEKVREQYNVLETNHEKLIEENKIIPRLETENesliKENNALHKVHQEFSETMEQE 190
                 6667777777778888888...9999**********************999999999999977788888888888777664 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.6
        PilJ  61 lrlgdpapgllvpae.avraqleaveqlWqelk 92 
                 l++++++ + ++ ++ ++r+ le+ e++ +++k
  CCD25697.1 311 LKQKSKQIDEFDKKNkSIRKVLEETETQLEKYK 343
                 555555556666666666666666666666655 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.7
        PilJ  44 raqlretiaqfdrtlaalrlgdpap 68 
                  ++l++t++++++t ++++l  +++
  CCD25697.1 363 EDDLEKTVETLNETCENMALAKAET 387
                 5678888888888888877766655 PP

>> SIKE  SIKE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   7.2     0.035        90      24      97 ..     120     188 ..     100     190 .. 0.62
   2 ?    8.9  12.5   0.00051       1.3      23      96 ..     164     241 ..     161     244 .. 0.78
   3 ?    7.5   7.5    0.0014       3.5      63     142 ..     310     381 ..     282     391 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.035
        SIKE  24 aAdsLleqaqalnkkiesmkqyqeevkelneiakek.prseLiagiqqenrqireLqqENreLrasleehqsaLe 97 
                 ++  L eq +a+  ++e   +++e+ + l+++ ++   ++++i ++++en+    L +EN+ L+ + +e  +++e
  CCD25697.1 120 STKLLTEQLKATRLELE---KVREQYNVLETNHEKLiEENKIIPRLETENES---LIKENNALHKVHQEFSETME 188
                 22233333344444444...44555555554433223567888899999975...679************99998 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00051
        SIKE  23 taAdsLleqaqalnkki....esmkqyqeevkelneiakekprseLiagiqqenrqireLqqENreLrasleehqsaL 96 
                 t  +sL+++ +al+k      e+m+q +e + + n+  +ek  ++L  +  + ++q++ L  EN+ L++ lee+++ +
  CCD25697.1 164 TENESLIKENNALHKVHqefsETMEQEKESLISANKSLEEKFDKQLEIATLKKEEQLKTLTTENQFLKNQLEEMKKKI 241
                 667899999966665441112567799999999999999**888886666777899******************9865 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0014
        SIKE  63 eLiagiqqenrqireLqqENreLrasleehqsaLelImsKYReqvskllkakkeekkeavlkkklseevesqeekieeMa 142
                 +    ++q ++qi e  + N+ +r +lee ++ Le    KY+   + l + k +++k   l+ +l+++ve+++e  e+Ma
  CCD25697.1 310 D----LKQKSKQIDEFDKKNKSIRKVLEETETQLE----KYKTENEDLKQGKIFKSKIKLLEDDLEKTVETLNETCENMA 381
                 3....599***********************9997....**********99999999999999***********999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3079  (0.171733); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        47  (0.00262145); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.99u 0.32s 00:00:01.31 Elapsed: 00:00:00.49
# Mc/sec: 3209.79
//
Query:       CCD25698.1  [L=638]
Description: hypothetical protein NDAI_0F03800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.7e-25   87.5   0.4      2e-24   85.4   0.4    2.2  1  DnaJ         DnaJ domain
    1.7e-07   31.5   6.2    0.00038   20.7   0.4    2.9  2  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
    2.8e-07   30.7   7.5    2.8e-07   30.7   7.5    2.5  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
    6.9e-06   26.3  11.5    0.00015   22.1   4.3    2.5  2  zf-met       Zinc-finger of C2H2 type
    1.7e-05   25.0   9.4      0.024   15.1   2.5    2.7  2  zf-C2H2      Zinc finger, C2H2 type
    3.9e-05   24.1   6.4       0.14   13.1   0.3    2.8  2  zf-C2H2_4    C2H2-type zinc finger
  ------ inclusion threshold ------
      0.011   15.9   2.3      0.011   15.9   2.3    3.5  3  AKAP95       A-kinase anchoring protein 95 (AKAP95)
      0.041   13.8   0.0       0.22   11.5   0.0    2.3  2  RPT          A repeated domain in UCH-protein
      0.074   13.4   0.4        2.4    8.5   0.2    2.6  2  zf-UBP       Zn-finger in ubiquitin-hydrolases and other prot
        0.4   10.7  10.6       0.11   12.6   4.6    2.6  2  zf-C2H2_6    C2H2-type zinc finger
        4.1    8.1   7.8         10    6.9   0.4    3.3  3  FOXP-CC      FOXP coiled-coil domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.4   1.3e-27     2e-24       2      63 .]       5      67 ..       4      67 .. 0.99

  Alignments for each domain:
  == domain 1  score: 85.4 bits;  conditional E-value: 1.3e-27
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHH.HHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdp.eaeekFkeineAyevLsdpekRkqYD 63
                yYe+Lgv+ +as++e+kkaYrk+al++HPDknp++  ea+e+F  i +AyevLsdp++R++YD
  CCD25698.1  5 YYELLGVEVTASDAELKKAYRKKALQFHPDKNPDNVdEATENFATIRAAYEVLSDPQERAWYD 67
                9**********************************9**************************9 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.4   2.3e-07   0.00038      49      86 ..     352     388 ..     315     397 .. 0.84
   2 !   12.3   0.9   9.7e-05      0.16      48      85 ..     589     626 ..     582     635 .. 0.78

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 2.3e-07
   zf-C2H2_2  49 ekleClyCekefkslealreHmkkkgHckineeeeeek 86 
                   +eC++C+k fks +++++H k+k+H+k  +e ++e 
  CCD25698.1 352 V-YECFVCKKVFKSEKQFENHTKTKSHKKKVYELQKEV 388
                 3.79*************************988876654 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 9.7e-05
   zf-C2H2_2  48 eekleClyCekefkslealreHmkkkgHckineeeeee 85 
                 +++ +C +C++ f+s+++l +H+k+ gH     + ++ 
  CCD25698.1 589 NQTEICGTCGQVFDSRNHLFQHVKSMGHAAPTSKVKKA 626
                 55679***********************9865543333 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   7.5   1.7e-10   2.8e-07       2      27 .]     353     378 ..     352     378 .. 0.97
   2 ?   -0.8   0.3       1.3   2.1e+03       4      23 ..     594     613 ..     593     616 .. 0.84

  Alignments for each domain:
  == domain 1  score: 30.7 bits;  conditional E-value: 1.7e-10
                  CBBTTTTBBBSSHHHHHCCTTSHHHH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSKkHK 27 
                  ++C +C+K Fkse++++nH k+K+HK
   CCD25698.1 353 YECFVCKKVFKSEKQFENHTKTKSHK 378
                  89***********************9 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.3
                  BTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   4 CvlCdKyFksenaldnHlkS 23 
                  C +C   F s n l +H+kS
   CCD25698.1 594 CGTCGQVFDSRNHLFQHVKS 613
                  7788888999999999*999 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   4.3     9e-08   0.00015       1      25 []     353     377 ..     353     377 .. 0.96
   2 !    8.2   0.7    0.0021       3.4       3      25 .]     594     616 ..     593     616 .. 0.91

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 9e-08
      zf-met   1 fyCelCnvtfnsesqlksHlqGKkH 25 
                 ++C +C+++f+se+q+++H + K H
  CCD25698.1 353 YECFVCKKVFKSEKQFENHTKTKSH 377
                 78*******************9998 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0021
      zf-met   3 CelCnvtfnsesqlksHlqGKkH 25 
                 C  C  +f s+++l +H ++  H
  CCD25698.1 594 CGTCGQVFDSRNHLFQHVKSMGH 616
                 ******************99655 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   2.5   1.4e-05     0.024       1      23 []     353     377 ..     353     377 .. 0.93
   2 !   13.6   0.7   4.4e-05     0.071       3      23 .]     594     616 ..     593     616 .. 0.90

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.4e-05
                 EEETTTTEEESSHHHHHHHHHC..C CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirt..H 23 
                 y+C +C+k+Fk+  ++++H +t  H
  CCD25698.1 353 YECFVCKKVFKSEKQFENHTKTksH 377
                 99******************98666 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 4.4e-05
                 ETTTTEEESSHHHHHHHHHC..C CS
     zf-C2H2   3 CpdCgksFkrksnLkrHirt..H 23 
                 C+ Cg++F ++ +L +H ++  H
  CCD25698.1 594 CGTCGQVFDSRNHLFQHVKSmgH 616
                 *****************987555 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   1.3   9.9e-05      0.16       1      22 [.     353     374 ..     353     376 .. 0.93
   2 !   13.1   0.3   8.5e-05      0.14       2      22 ..     593     613 ..     593     614 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.9e-05
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkt 22 
                 ++C +C+k+F+s k++ +H kt
  CCD25698.1 353 YECFVCKKVFKSEKQFENHTKT 374
                 89*****************987 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 8.5e-05
   zf-C2H2_4   2 kCpiCgksFsskkaLlrHlkt 22 
                 +C  Cg++F s+++L +H+k+
  CCD25698.1 593 ICGTCGQVFDSRNHLFQHVKS 613
                 5999***************97 PP

>> AKAP95  A-kinase anchoring protein 95 (AKAP95)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   2.3       1.4   2.2e+03      31      67 ..     258     296 ..     219     315 .. 0.68
   2 ?   15.9   2.3   6.9e-06     0.011       1      46 [.     353     399 ..     353     434 .. 0.85
   3 ?    4.4   6.4     0.025        40      48     130 ..     548     633 ..     507     638 .] 0.69

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.4
      AKAP95  31 yi..qtkldkkvveFleeylvnkfkkteerrqqlkeaee 67 
                 ++   +kldk + + ++   +++ +k e+r+++lke+ +
  CCD25698.1 258 FVsfIKKLDKRMKDGIRRAEEERLQKEEQRKKELKENIN 296
                 333345666666666666666666666666666655444 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 6.9e-06
      AKAP95   1 FtCslCKfrtfeekeiekHleskfHketlkyiqtkldkkvveF.lee 46 
                 + C++CK     ek+ e+H ++k+Hk  + ++q+++ k+++ F l+e
  CCD25698.1 353 YECFVCKKVFKSEKQFENHTKTKSHKKKVYELQKEVRKENMTFgLDE 399
                 57*****99999******************************94444 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.025
      AKAP95  48 lvnkfkkteerrqqlkeaeeavkkiekdvlegvgeehflkkveavhcsaCdlyiPavlssvqkHlksadhn....knkrlmkeqlkk 130
                  +nk+kk ++ ++q+++++e +++  + +l    e    +  ++  c +C     +  + + +H+ks+ h+    k k++ k ++kk
  CCD25698.1 548 TNNKNKKKKKSKKQNNKSKEISSRTSTPSLTVSKEPSTDNTNQTEICGTCGQVFDS-RNHLFQHVKSMGHAaptsKVKKAKKSKTKK 633
                 4678888888888887777777776666665555555555558999****988877.678899*******82222344444444444 PP

>> RPT  A repeated domain in UCH-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.22       6      45 ..       6      50 ..       6      53 .. 0.90
   2 ?   -2.8   0.0         4   6.5e+03      26      46 ..     116     137 ..     104     139 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
         RPT  6 yklLgidentdDdviitayqvkl.....eddpsqkdklrrALkvI 45
                y+lLg++ +++D ++ +ay+ k      +++p+++d++ + + +I
  CCD25698.1  6 YELLGVEVTASDAELKKAYRKKAlqfhpDKNPDNVDEATENFATI 50
                99*********************877766699****999988887 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 4
         RPT  26 vkleddp.sqkdklrrALkvIA 46 
                 +k++d+p + +  + + +++ A
  CCD25698.1 116 TKVNDSPaGLYQIAGKIFSKLA 137
                 4889999887777766666666 PP

>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.18     3e+02      11      39 ..     352     377 ..     333     387 .. 0.73
   2 ?    8.5   0.2    0.0015       2.4      13      40 ..     593     617 ..     584     621 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.18
                 EEEETTT--EEE-TTTT-HHHHHHHHH-- CS
      zf-UBP  11 lWlCLkCghvgCgrksnghalkHyeetrH 39 
                 ++ C  C +v+  +k+     +H +++ H
  CCD25698.1 352 VYECFVCKKVFKSEKQ---FENHTKTKSH 377
                 788*******999755...3444443333 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0015
                 EETTT--EEE-TTTT-HHHHHHHHH--- CS
      zf-UBP  13 lCLkCghvgCgrksnghalkHyeetrHp 40 
                 +C +Cg+v+  r   +h  +H+++ +H+
  CCD25698.1 593 ICGTCGQVFDSR---NHLFQHVKSMGHA 617
                 799999999998...9*******99996 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.6   6.5e-05      0.11       1      26 [.     352     379 ..     352     380 .. 0.83
   2 ?    0.8   0.3      0.33   5.3e+02       3      20 ..     593     610 ..     593     613 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 6.5e-05
   zf-C2H2_6   1 vheCsvCsksFpslqaLggHkks..Hrk 26 
                 v+eC vC+k+F+s +  + H k+  H+k
  CCD25698.1 352 VYECFVCKKVFKSEKQFENHTKTksHKK 379
                 7**************9999995522665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.33
   zf-C2H2_6   3 eCsvCsksFpslqaLggH 20 
                 +C +C+ +F s   L  H
  CCD25698.1 593 ICGTCGQVFDSRNHLFQH 610
                 599******997777766 PP

>> FOXP-CC  FOXP coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       1.5   2.5e+03      16      46 ..     255     285 ..     252     300 .. 0.67
   2 ?    6.9   0.4    0.0061        10      12      47 ..     358     393 ..     357     401 .. 0.88
   3 ?    3.7   0.2     0.058        95      12      35 ..     597     620 ..     592     632 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.5
     FOXP-CC  16 ledveeflkhlnseHalddkstaqlrvqmqv 46 
                 ++ + +f+k+l++  + + + +++ r+q++ 
  CCD25698.1 255 VKRFVSFIKKLDKRMKDGIRRAEEERLQKEE 285
                 5667777777777777777777776766643 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0061
     FOXP-CC  12 CekvledveeflkhlnseHalddkstaqlrvqmqvv 47 
                 C+kv+++ ++f +h +++ + ++    q +v+++++
  CCD25698.1 358 CKKVFKSEKQFENHTKTKSHKKKVYELQKEVRKENM 393
                 *****************9999998889988888765 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.058
     FOXP-CC  12 CekvledveeflkhlnseHalddk 35 
                 C +v+++ +++ +h++s  +    
  CCD25698.1 597 CGQVFDSRNHLFQHVKSMGHAAPT 620
                 9**************998776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3890  (0.216967); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                       166  (0.00925874); expected 17.9 (0.001)
Passed Fwd filter:                        46  (0.00256568); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.55
# Mc/sec: 3500.95
//
Query:       CCD25699.1  [L=398]
Description: hypothetical protein NDAI_0F03810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-24   84.9   1.6      4e-24   84.7   0.0    2.0  3  GST_C           Glutathione S-transferase, C-terminal domain
    3.1e-20   72.3   0.0    9.6e-20   70.7   0.0    1.9  1  GST_N           Glutathione S-transferase, N-terminal domain
    2.9e-10   40.4   0.0    6.3e-10   39.3   0.0    1.6  1  GST_N_3         Glutathione S-transferase, N-terminal domain
      7e-09   35.9   0.0    1.6e-08   34.7   0.0    1.6  1  GST_N_2         Glutathione S-transferase, N-terminal domain
    1.9e-06   28.0   0.0    5.4e-06   26.5   0.0    1.8  1  GST_C_3         Glutathione S-transferase, C-terminal domain
     0.0073   16.3   0.0      0.013   15.6   0.0    1.4  1  GST_C_2         Glutathione S-transferase, C-terminal domain
  ------ inclusion threshold ------
        1.8    8.0  14.3        2.5    7.5  14.3    1.1  1  Endostatin      Collagenase NC10 and Endostatin
        7.7    6.8  12.0         13    6.1  12.0    1.3  1  PTPRCAP         Protein tyrosine phosphatase receptor type C-


Domain annotation for each model (and alignments):
>> GST_C  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.3       5.1   1.2e+04      15      29 ..      80      91 ..      69     101 .. 0.54
   2 ?   -2.8   0.0       3.5   7.8e+03      66      87 ..     130     151 ..     129     152 .. 0.80
   3 !   84.7   0.0   1.8e-27     4e-24       1      93 []     267     389 ..     267     389 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 5.1
                TTHHHHHHHHHHHHH CS
       GST_C 15 kaeekkeelvdeale 29
                 ++++ +   +e+++
  CCD25699.1 80 QQQQQQQ---QEQDN 91
                3333333...33333 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.5
                 HHHHHTTTTTTTTSHHHHHHHH CS
       GST_C  66 wlqrlglafgqekfpnlkawle 87 
                 +lq+++  fg  ++  ++++++
  CCD25699.1 130 QLQQPQAPFGDVEYSRITKFFQ 151
                 5677788888899999***998 PP

  == domain 3  score: 84.7 bits;  conditional E-value: 1.8e-27
                 HHHHHHHHHHHHHSTTH.........................HHHHHHHHHHHHHHHHHHHHHHHHHH......TSSSSSTTSSCHHHHHHHHHHHHHH CS
       GST_C   1 ladlisqilllfyvkae.........................ekkeelvdealekvaevlsaleeelk......kqdylvGdkltlADialvpilnwlq 68 
                 +a++i+q+l+++y++++                         e++e++v+e ++ +a+++s  +++l+      ++ +lvGdklt+AD+a+vp++n+++
  CCD25699.1 267 HAPMIGQALHFSYFHSQkipsaierytdevrrvygvvemalaERREAVVMEMDTDNAAAYSSGTTPLSqsrffdYPIWLVGDKLTIADLAFVPWNNVVD 365
                 689************************************************************************************************ PP

                 HHTTTTTTTTSHHHHHHHHHHHTSH CS
       GST_C  69 rlglafgqekfpnlkawlerimarp 93 
                 r+g++++  +fp++++w++++m+rp
  CCD25699.1 366 RIGINIK-VEFPEVYKWTKHMMRRP 389
                 *******.****************9 PP

>> GST_N  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   4.3e-23   9.6e-20       2      75 ..     157     233 ..     156     234 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 4.3e-23
                 EEEEESSSTSHTHHHHHHHHHHTT-EEEEEEECSTTTCGGCHHHHHHCTTS-SSEEEET...TEEEESHHHHHHHHH CS
       GST_N   2 vltlysirgsprahrirlllaakgveyevvpldfeageekspellklnplgkvPaLedn...gkkltESraIleYia 75 
                  +tl+s+r+ p+ +++ ++l ++g++y++++ldf+ ge+++pe++++np+++vPaL+d+   ++ ++ES+aIl +++
  CCD25699.1 157 GYTLFSHRSAPNGFKVAIVLSELGLQYNTIFLDFNVGEHRAPEFVSMNPNARVPALIDHnmdNLSIWESGAILLHLV 233
                 589********************************************************9*9************997 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   2.8e-13   6.3e-10       1      71 [.     160     236 ..     160     240 .. 0.87

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 2.8e-13
                 EES-TTSHHHHHHHHHHHHHT--EE..EE---TTTT.HHHHHHH-TT--SSEEETT...S-EEESHHHHHHHHHHHH CS
     GST_N_3   1 LygfpaSpyarrvrlaLnekglpve..vvevtpgeh.deellaknplgkvPvLedd...gealtdSlaIidyLeely 71 
                 L++ ++ p+  +v+++L e+gl+++  + + ++geh  +e+  +np+ +vP+L d    + ++++S aI+ +L ++y
  CCD25699.1 160 LFSHRSAPNGFKVAIVLSELGLQYNtiFLDFNVGEHrAPEFVSMNPNARVPALIDHnmdNLSIWESGAILLHLVNKY 236
                 7888899******************4447778999989***************75435588************9988 PP

>> GST_N_2  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   7.3e-12   1.6e-08       5      67 ..     169     232 ..     166     235 .. 0.89

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 7.3e-12
                 HHHHHHHHHHCT--EEEEEEH...-TTSHHHHHHHHCTTTSSSEEE-C..TTEEEESHHHHHHHH CS
     GST_N_2   5 ahRvlialalkglediisvvvlepkgfekseefprlnprgtVPvLwdk..dgqvineSseIlryl 67 
                   +v i+l ++gl++ ++++ + + g+++ +ef   np+  VP+L+d+  d+  i+eS +Il  l
  CCD25699.1 169 GFKVAIVLSELGLQYNTIFL-DFNVGEHRAPEFVSMNPNARVPALIDHnmDNLSIWESGAILLHL 232
                 579**************999.668999********************866777********9776 PP

>> GST_C_3  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.4e-09   5.4e-06      47      95 ..     344     394 ..     336     398 .] 0.90

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2.4e-09
                 SSSTTS--HHHHHHHHHHHHHHHH..TCCCC-HHHHHHHHHHHTSHHHHHH CS
     GST_C_3  47 ylvgdklTyADlalfqvldgleea..ealkkfpklkalyervearpkikaY 95 
                 +lvgdklT+ADla++ + + + ++  +++ +fp++ ++ +++  rp++ + 
  CCD25699.1 344 WLVGDKLTIADLAFVPWNNVVDRIgiNIKVEFPEVYKWTKHMMRRPAVVKA 394
                 ************************7666689***************99775 PP

>> GST_C_2  Glutathione S-transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.6e-06     0.013       3      67 ..     288     382 ..     286     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 5.6e-06
                 HHCHHHHHCCHCHHHCTTT--...............................-SS..CTTCS--HHHHHHHHHHHHHHHHHHS----TT-HHHHHHH CS
     GST_C_2   3 averaleqldaaldaleahLa...............................dsp.flfGdqptlaDialapflvrlraagpgfdireaypnlraWl 67 
                 a+er  +++++   ++e  La                               d p +l Gd++t+aD a+ p+   ++ +g  ++i+ ++p + +W 
  CCD25699.1 288 AIERYTDEVRRVYGVVEMALAerreavvmemdtdnaaayssgttplsqsrffDYPiWLVGDKLTIADLAFVPWNNVVDRIG--INIKVEFPEVYKWT 382
                 5677777888888888888888888888888888888888888888877776777******************99999998..78888888888885 PP

>> Endostatin  Collagenase NC10 and Endostatin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  14.3    0.0011       2.5      38     141 ..      20     126 ..      15     158 .. 0.48

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0011
  Endostatin  38 rdgwrkvqlgelipllselek.....kenevaavqps.........Pvvksskerlvllearrktksskesvkakekeaskeeleekaekkveeseksl 122
                 ++ +r+v +g++++++++++      +  e ++++++         P+ +  ++++++    +  ++++++++++ +++++++ + ++++ ++++++++
  CCD25699.1  20 SNALRQVNIGNSNTTTDQSNInlelsS--ESNNNNSNpsnnvnnniPTHRNYEQEQENR---NYVQQQQQQQQEQDNRNYEQQGQINSQNIQQQENHHH 113
                 5889********999887754666431..333333332233344444444433322222...2222222222222222222322333323333333333 PP

  Endostatin 123 ttarraskkepeaaaetse 141
                 t++++ ++++      +++
  CCD25699.1 114 THNMNIQQHQ------NHH 126
                 3333322222......222 PP

>> PTPRCAP  Protein tyrosine phosphatase receptor type C-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  12.0    0.0056        13      52     103 ..      54     119 ..      17     136 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0056
     PTPRCAP  52 d...............eedeeedsedleggeeeaesqeeeqaeseeageeqalekaeeakdeekask 103
                 +               e+++e+ ++ ++++++++++q++ ++e++++ ++q  +++e+ ++  + + 
  CCD25699.1  54 NpsnnvnnnipthrnyEQEQENRNY-VQQQQQQQQEQDNRNYEQQGQINSQNIQQQENHHHTHNMNI 119
                 2445566778888888999999875.55555666678999999999999999999887776554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3262  (0.18194); expected 358.6 (0.02)
Passed bias filter:                      724  (0.0403815); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 2665.66
//
Query:       CCD25700.1  [L=405]
Description: hypothetical protein NDAI_0F03820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-17   64.4  14.0    6.3e-12   45.9   0.1    3.0  3  Elongin_A  RNA polymerase II transcription factor SIII (Elong
  ------ inclusion threshold ------
      0.054   13.5   0.4        2.2    8.3   0.1    2.7  2  DPPIV_rep  Dipeptidyl peptidase IV (DPP IV) low complexity re


Domain annotation for each model (and alignments):
>> Elongin_A  RNA polymerase II transcription factor SIII (Elongin) subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.1     7e-16   6.3e-12       1      73 [.      19      89 ..      19      97 .. 0.87
   2 !   24.0   4.5   4.6e-09   4.1e-05      28     104 ..     105     171 ..      90     172 .. 0.87
   3 ?   -0.8   0.3      0.25   2.2e+03      72      89 ..     214     231 ..     194     238 .. 0.60

  Alignments for each domain:
  == domain 1  score: 45.9 bits;  conditional E-value: 7e-16
   Elongin_A  1 ikdvGdvpyellrpiLekctpeqLreiEensphlaeetdelWkklikrdfpeeskekstepkepkswrelYek 73
                ++d+Gdvp++l+ ++L+  + eqL ++Ee+s  l+ e+delW k+i++ +p++ +e+ +++k  ++    Y +
  CCD25700.1 19 LEDIGDVPFRLIADVLNIVSKEQLNKLEERSLFLVFEDDELWLKFIQKYYPTHVHEQFVSKK--DTIIHYYMN 89
                58***************************************************999998743..345555554 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 4.6e-09
   Elongin_A  28 EensphlaeetdelWkklikrdfpeeskekstepkepkswrelYeklkkereeklkeaaerLreaykklkkekekkk 104
                 E+++  ++e  d+ +k lik+d++++  ++++       +r lY+k+ ++  +k++++ae+Lr ++++lk e+e++k
  CCD25700.1 105 EDSN--MKELIDSFFKDLIKKDIKKN--KYRV------PYRMLYFKYLNDDIKKQERSAEKLRLQMNQLKTEREQNK 171
                 5544..67779999*********999..3333......79***********************************98 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.25
   Elongin_A  72 eklkkereeklkeaaerL 89 
                 +kl++er++ +k  +erL
  CCD25700.1 214 RKLNEERKRVNKGNQERL 231
                 344455555555555555 PP

>> DPPIV_rep  Dipeptidyl peptidase IV (DPP IV) low complexity region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.017   1.6e+02      11      18 ..     141     148 ..     141     149 .. 0.87
   2 ?    8.3   0.1   0.00024       2.2       2      13 ..     393     404 ..     392     404 .. 0.92

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.017
   DPPIV_rep  11 YlNntfrY 18 
                 YlN++++ 
  CCD25700.1 141 YLNDDIKK 148
                 9*****86 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00024
   DPPIV_rep   2 srRtfTLeDYlN 13 
                 s+R ++L DYl+
  CCD25700.1 393 SKRKLSLKDYLK 404
                 9**********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1462  (0.0815439); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2788.20
//
Query:       CCD25701.1  [L=349]
Description: hypothetical protein NDAI_0F03830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-40  138.7   0.0    2.2e-40  138.0   0.0    1.3  1  CRAL_TRIO    CRAL/TRIO domain
    1.8e-16   60.1   0.2    4.5e-16   58.8   0.2    1.7  1  CRAL_TRIO_N  CRAL/TRIO, N-terminal domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.0   0.0   2.5e-44   2.2e-40       2     158 ..     142     293 ..     141     294 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.0 bits;  conditional E-value: 2.5e-44
   CRAL_TRIO   2 eileggkvgihgrDkegrpvlylrlgrfdpkklsleelvralvlvlerllkeleedgqvegvtvviDlkgls....lskmlwkp.isllkkilkilqdn 95 
                 +++e+gk++i+g++++ rp+lyl++gr+++k+++  ++v++lv++ler+++ +++  ++++++++iD+k +     ++  ++ p i++ k++l+ilq++
  CCD25701.1 142 VENESGKQVILGFENDARPILYLKPGRQNTKTSR--RQVQHLVFMLERVIDFMPP--GQDSLALLIDFKEYPdvpkVAGNSKIPpIGVGKEVLHILQTH 236
                 6899***************************999..*******************..***************9999777777888************** PP

   CRAL_TRIO  96 yperlgkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGG 158
                 yperlgk+l+ n+P+l+++++kl++pf+d+ treK++f +p      ++ky++++ql + +GG
  CCD25701.1 237 YPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEP------FTKYVPKDQLDSLYGG 293
                 ***************************************88......99************** PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.2     5e-20   4.5e-16       1      52 [.      47     112 ..      47     114 .. 0.96

  Alignments for each domain:
  == domain 1  score: 58.8 bits;  conditional E-value: 5e-20
  CRAL_TRIO_N   1 aydellahlqeseyk...................lteeekfWltredhddaclLRfLRArkwdvekAikrL 52 
                  +y  +l+h+q++++                    l+e ek+Wltre     c+LR+LRA+kw ++++i+r+
   CCD25701.1  47 MYLDVLHHFQDESLTfparekpdesnttadskkpLSEFEKAWLTRE-----CILRYLRATKWVLQDCIARI 112
                  5889*********99*******************************.....******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       343  (0.019131); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2554.26
//
Query:       CCD25702.1  [L=301]
Description: hypothetical protein NDAI_0F03840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-42  144.9   0.5    1.2e-42  144.9   0.5    1.7  2  EXOSC1    Exosome component EXOSC1/CSL4


Domain annotation for each model (and alignments):
>> EXOSC1  Exosome component EXOSC1/CSL4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.39     7e+03      72      72 ..     108     108 ..      66     134 .. 0.60
   2 !  144.9   0.5   6.8e-47   1.2e-42       1     109 []     141     246 ..     141     246 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.39
                 S CS
      EXOSC1  72 t 72 
                 +
  CCD25702.1 108 K 108
                 1 PP

  == domain 2  score: 144.9 bits;  conditional E-value: 6.8e-47
                 -S-TT-EEEEEEEEEESSEEEEEEEEECTBSBCCCEEECCCTTSS--STSTTSSCCHCTEEETTSSTTTT.SEEEEEECCCTECCSSSTT-GGCTEECT CS
      EXOSC1   1 lPkegdvVLarvtrlrkkqalveilsvegennvlsdsgvgangegavkeieagggldsllsvatvssdlgetfkaiirsqdvRatekdrvkviemfrpG 99 
                 lPkegd+VL+rvtr++ ++a+veil+ve++ nv+ dsg+g+ng+g+v++   gg+++s++sv++vssdlgetf+++irsqdvRate+drvk+i++f+pG
  CCD25702.1 141 LPKEGDIVLTRVTRISLQRANVEILAVENQ-NVPVDSGIGSNGSGIVAA--CGGSGASTFSVSQVSSDLGETFRGLIRSQDVRATERDRVKIIDSFKPG 236
                 8**************************999.*****************9..99999999**************************************** PP

                 TEEEEEEEEC CS
      EXOSC1 100 DIvraqviSl 109
                 DIvraqv+Sl
  CCD25702.1 237 DIVRAQVLSL 246
                 *********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2216.59
//
Query:       CCD25703.1  [L=938]
Description: hypothetical protein NDAI_0F03850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (938 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1431  (0.0798148); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6622.56
//
Query:       CCD25704.1  [L=431]
Description: hypothetical protein NDAI_0F03860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.017   15.7   0.0      0.062   13.9   0.0    2.0  1  Globin    Globin


Domain annotation for each model (and alignments):
>> Globin  Globin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   3.5e-06     0.062      25     109 ..     212     281 ..     197     282 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3.5e-06
                 HHHHHHSGGGGGGSTTTTTTT-HHHHCTSHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHCSTT--HHHHHHHHHHH CS
      Globin  25 krlFkaypdtkklFkkfgdlssaedlksspkfkahakkvlaalgeavknldndealkaalkklaarHaergkvdpanFklfgeal 109
                 ++l  a+p + ++F+                ++++ + + + ++ ++kn ++  ++++ l  +++rHa+ +++++  F+++g a+
  CCD25704.1 212 ENLVLANPHMEEIFP---------------TIRHQTSSFAKVVNTLIKNSEDLSKVDKVLYGIGKRHARILGIQAPSFEEMGVAF 281
                 555555555555555...............4689999999999*******9999***************************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 3040.79
//
Query:       CCD25705.1  [L=1004]
Description: hypothetical protein NDAI_0F03870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.8e-196  652.8  11.7   6.8e-196  652.6  11.7    1.0  1  Med16     Mediator complex subunit 16
  ------ inclusion threshold ------
      0.084   12.8   0.0       0.36   10.8   0.0    2.0  2  SCA7      SCA7, zinc-binding domain


Domain annotation for each model (and alignments):
>> Med16  Mediator complex subunit 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  652.6  11.7  7.5e-200  6.8e-196       1     758 []     201    1001 ..     201    1001 .. 0.96

  Alignments for each domain:
  == domain 1  score: 652.6 bits;  conditional E-value: 7.5e-200
       Med16    1 qdkatpkepgasIvafkWLniekpqivnkaaakdqerniykysvnqfrPigvfHPistkealvalrrsGqlkLlyqgenkveykkisvqlknvses. 96  
                  ++k+t+ke++++I +f+WL+  k  ++ k++a+d+++n+yk++ +q++P+gvfHP+++k+a++ +r++Gq++++yq++n++++kki++ql +  ++ 
  CCD25705.1  201 ERKHTKKEYNTTIMDFEWLSATKITMAAKFCALDTTSNTYKNKLQQIPPYGVFHPAFMKYACLGIRKNGQINFWYQFSNSKDHKKITLQLHTSVNQr 297 
                  5799****************************************************************************************99999 PP

       Med16   97 .ksrelltkAaiaftndgq.ilvtayssltnkiqfYkvevnwkrqkldpeqktpkeseklPsltlkhihqktedqcdeegkvleLthldiisatpek 191 
                   k+ ++lt A+i++  ++q +l+++ys+ltnk+ fY+++vnw+++ ++p+  ++      P+ +++ i++ t d++d+eg+ l+L++++i s+tp +
  CCD25705.1  298 tKELDWLTFAKITPIVEDQcMLISTYSKLTNKLIFYELHVNWNVNATKPTALND------PTVKIQQILETTIDPVDNEGNPLKLSNIHIMSKTPTE 388 
                  999***************************************************......************************************9 PP

       Med16  192 ksg.psIlivysipgqssSiieryqltkea......nllhkafselgskksvtqkkskstlrlvddltldskiisitsteldlvvaiyydDgsievv 281 
                  ++  p+Il+vy+i g  +++++ry+l +++      +      se++s   + ++++++++ +  dl l+++++++t++ ++ ++++y++Dg+  v+
  CCD25705.1  389 NDPsPEILLVYDIMGSRKTLVKRYKLVRTQlpldfvS---ILKSENNSGGGQYLRSNRYNFIHQVDLPLEKRVKQVTTELINGFITFYFEDGTTIVY 482 
                  9989**************************8885433...44455555556678899**************************************** PP

       Med16  282 drnslkvvnet.....isgdyppktitslfdaGfkfpki.snknvlvlavSpsmtsivyldieGqlklkqleklkflgvsskel......sitsaal 366 
                  ++ ++kv++e+       +++ ++++ts++++ f+fpk+ + ++ ++++vSps+t+i+        k+ +++ +++++++++++       ++++a+
  CCD25705.1  483 NQGDWKVETERllnqpL-SGNYNNLVTSMLSVNFQFPKLpNLSAIEWVRVSPSLTGII-------AKIANKSTPQYFPLMKHDVtdtskdDLNATAF 571 
                  **********9*99844.455579***************999****************.......789999************************** PP

       Med16  367 aleyaiatgsdtssdDilllikteilrveklsekrtrnFiesviselhvsinftldaekesldkLlsspalqklLllqlelGpaqknnevvsdiawi 463 
                  a++y+i+t++++s++D+++++kt+++++ kl+e+r++nF+ ++++ ++ + n++ld +ke++dk l  + +q++ l qlelG  ++  ++  ++a++
  CCD25705.1  572 AFAYVIGTYRQLSAEDLTITCKTHLMQIAKLDENRAKNFVMLIVARIYTFLNVSLDPPKEIMDKFLTGRQFQRITLFQLELGTCFD-GSNLDEMARL 667 
                  **************************************************************************************.********** PP

       Med16  464 iLnLrsasfalefvlrsikrqisk...p..............sitrgeliqslignikWlidlvlyllqeLlqlayakndvnsklklsnslvliill 543 
                  +LnL+sa fa+++v r+++++i++   +               +++++li+sli+++kW++++++y++qeLl+l      +n++ + +n lv+++++
  CCD25705.1  668 LLNLKSAHFAFNGVSRNLHFAIEQintTnaaqqlasgktfqtVFSKQDLIYSLIPIAKWFVKFITYMIQELLIL------INNPPNKENTLVIGVFG 758 
                  ************************9972556677778888889*******************************......***************** PP

       Med16  544 skvprlfllkiisalgrihellkklhkdlakllgeskeslnrvfsilnnspvtldlfekfLreldalvtkeneeaglsdier.......EkelLvkg 633 
                  skv+r+++l i+ ++++i ++++k++++++++l+es+ +l+ v+   ++spv++++fe+fL ++++++++ ne+++  +++        E +lLv++
  CCD25705.1  759 SKVSRMLILLILVEIKKIVQIITKFPENTYPVLNESSYYLRTVL---SDSPVNFEKFETFLVDVNNKFSAYNEQQQKLNPQSqstqmlrECSLLVRA 852 
                  ********************************************...************************999888888888999999******** PP

       Med16  634 eippeleelakvlldrtsisllsevklsalyfydtswLgigedkrfenyvrtllvdii.....................kktaddsivdslrkeqla 709 
                  e++pe  ++ ++ll ++++ l s+v+ +++yf dts L+i++ + f ++  +ll++++                        +d++++d+++k++++
  CCD25705.1  853 EVLPEFSKIGEFLLAYSNNVLISHVDAARVYFCDTSGLRISSTELFRPEYCKLLQPLEkglvidpddnpilplnpgrfsPMVYDGISYDRFTKQEVS 949 
                  ******************************************************************************9999*************** PP

       Med16  710 kkkkqlRrCtRCgavslvgdplvrkatavkal.....wtmvflrtCiCggawve 758 
                  ++k   +rC+RCg+v+++g+ +++++t+++++     w+ +++r+C C+g+++e
  CCD25705.1  950 EEKI--KRCARCGCVTRAGYVVSNDKTITSTIittkrWPSMYTRNCTCSGMLYE 1001
                  *886..*********************************************996 PP

>> SCA7  SCA7, zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.4   3.6e+03      42      58 ..     288     304 ..     282     307 .. 0.83
   2 ?   10.8   0.0     4e-05      0.36      35      60 ..     590     615 ..     587     618 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.4
        SCA7  42 lgakraVegRskpfdvL 58 
                 l++  +V++R+k+ d L
  CCD25705.1 288 LQLHTSVNQRTKELDWL 304
                 778889*******9988 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4e-05
        SCA7  35 LtCksHslgakraVegRskpfdvLla 60 
                 +tCk+H ++  +  e+R k+f +L+ 
  CCD25705.1 590 ITCKTHLMQIAKLDENRAKNFVMLIV 615
                 8***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 6553.11
//
Query:       CCD25706.1  [L=428]
Description: hypothetical protein NDAI_0F03880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-58  198.6  23.5    1.5e-56  191.6  23.5    2.6  1  Ytp1      Protein of unknown function (Ytp1)


Domain annotation for each model (and alignments):
>> Ytp1  Protein of unknown function (Ytp1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.6  23.5   8.5e-61   1.5e-56       2     274 ..     145     380 ..     144     383 .. 0.93

  Alignments for each domain:
  == domain 1  score: 191.6 bits;  conditional E-value: 8.5e-61
        Ytp1   2 afvqvltgvvvllglgrgeevfnllAHfikGgvFflyG.lltlarylGafaelGwaWnkkpkksksekrivsaefveslliflYGitnvFlEhlagkgg 99 
                 ++ +v+++ v+++g++r+++++++lAH i+G +F++yG + ++a+++            ++    s+++  s++ ++s++++++Gi+n+F+Eh++g++ 
  CCD25706.1 145 GWLKVCMAPVAMFGFCRDNHTGQCLAHGIMGTAFVWYGfVYSFALVIPR---------ITK----SQETSYSQDHIDSWVMCIWGIVNTFTEHRWGRE- 229
                 799***********************************88888888854.........221....223459**************************9. PP

        Ytp1 100 ewsakdlqHvsiavlfiggGllGlllesklvrkllekaveeaakeaeekakvslnplPalvilltGilmsaHaQaselstkiHkqwGllLlaaavaRli 198
                 +w ++d+qH+++++++++gG+lG++l+++                        ++++P+l+i++tG++ms+H+Q++e+st++H+ +G++L++++++R++
  CCD25706.1 230 DWFTHDYQHTAMGIIWWAGGILGIFLSRNG----------------------KRTFVPSLLIVITGWAMSQHHQHLEVSTNVHSFFGTVLMIGGMLRIV 306
                 9**************************988......................2579******************************************* PP

        Ytp1 199 tylllllkppssvlpsrpptellasflLiagglvFmesteetvealeeegldamfllnvtvgltallmawvlllla 274
                 +++++l +++   l +   +++l++f+L+++gl+Fm +tee++ ++ + g+d+ +++ v+++ ++l+++w+ l+l 
  CCD25706.1 307 EICIILRDKKY--LDQILSFQYLSPFCLVSAGLLFMGATEEQMILVLRLGADHSSYIMVVMSGAFLVFFWMQLCLN 380
                 ****9988866..888999****************************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       932  (0.0519828); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3137.24
//
Query:       CCD25707.1  [L=833]
Description: hypothetical protein NDAI_0F03890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-39  136.2   1.5    1.3e-39  136.2   1.5    1.6  2  Peptidase_S8  Subtilase family
    1.5e-25   89.0   1.1    3.2e-25   88.0   1.1    1.6  1  P_proprotein  Proprotein convertase P-domain


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.2   1.5   1.5e-43   1.3e-39       1     285 [.     180     445 ..     180     458 .. 0.80
   2 ?   -2.8   0.1      0.34     3e+03     240     250 ..     620     652 ..     525     675 .. 0.63

  Alignments for each domain:
  == domain 1  score: 136.2 bits;  conditional E-value: 1.5e-43
                   -TT-EEEEECS-B-TT-TTTGGGEEE..EEEE---TTSG.GGEETT-SS-TT-SC-SSS....HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-S CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8   1 gkgvlvavlDtGvdpshpdlsvttdgerklvdvideegagfngadsettstnwarddngnsieHGthvAGiaaanapeegekngvapgakilsvkvl 97 
                   g+g++va++D+G+d+++pdl++++  e + +         fn+++  +      +dd+     HGt++AG +aa++++  +  gva++ak++++++l
    CCD25707.1 180 GEGIVVAIVDDGLDYENPDLKDNFSAEGSWD---------FNDNTQLP--KPRLADDY-----HGTRCAGEIAATKDNGFCGIGVAYNAKVAGIRIL 260
                   79*******************8877766653.........55555544..44444554.....********************************** PP

                   STTSB-HH..HHHHHHHHHHHHCT-SEEEE-EE...SCETTCHHCHHHHHH...HHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  98 dtsggsmetgteliraieeaaedkvdvinmslg...estslpktgrsieal...ainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvi 188
                   ++++++  + + l+      a d  d++++s+g   ++t+l+ + + ++++      ++++kkg ++v+++GN g  g+  +++ +++t+s +   i
    CCD25707.1 261 SGELTAEDEAASLVH-----ALDVNDIYSCSWGpkdDGTHLQGPTDLVKKAmirGTSDGRDKKGAIYVFASGNGGAFGD--NCNYDGYTNSIYS--I 348
                   *99977643233332.....334669*******887788888888888777888888899999****************..**********999..* PP

                   EEEEESTTSSB-TT--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-EE. CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx. RF
  Peptidase_S8 189 tvgayttegkiapfSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqdl. 284
                   t+ga + +g   p+S++++++      ++++  g++   +s++     +++s + + GTS+A+P+aag++ l+l+ +p+lt+++++ + + + + + 
    CCD25707.1 349 TIGALDHKGLHPPYSESCSAVM-----AVTYSSGSGEYIHSTDI---GNKCS-DHHGGTSAAAPLAAGIFSLVLQVNPNLTWRDLQYISILSSKQVn 436
                   ********************96.....99998888333333333...23343.689****************************9999888887774 PP

                   ......... CS
                   ........x RF
  Peptidase_S8 285 ........g 285
                           g
    CCD25707.1 437 vndgnwnkG 445
                   444444443 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.34
                   H......................EEEE-SHHHC CS
                   x......................xxxxxxxxxx RF
  Peptidase_S8 240 s......................yqsmsGTSmA 250
                   +                      ++s s TS A
    CCD25707.1 620 NdkeeeennkgvsetvsspilsaTDSTSITSTA 652
                   022222222222233333333334444444444 PP

>> P_proprotein  Proprotein convertase P-domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   1.1   3.6e-29   3.2e-25       1      86 []     518     603 ..     518     603 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.0 bits;  conditional E-value: 3.6e-29
                   EEEEEEEEEEEESSGGGEEEEEE-TTS-EEEEE---TT---SS-EEEEEEEESTTTTS---EEEEEEEEESSTT--EEEEEEEEEE CS
  P_proprotein   1 lehvqvsvnithtrrgdlritLvsPsGtrsvLlnrrgkdksrsgfldwtfmsthlwgeraeGeWkLevkdseeedtgtlkswkLrl 86 
                   +ehv+v+v+i++  rg  +i+LvsP+G +s L   r++d s++gf+dwtfms+++wge+  GeWkL+v+ ++e+++ ++k+w+++l
    CCD25707.1 518 IEHVTVTVHIDTVVRGATTIDLVSPDGMVSNLGVIRKRDVSSEGFQDWTFMSVAHWGESGVGEWKLKVRTTQEGNEVKFKTWRIKL 603
                   69********************************************************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       780  (0.0435049); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 5537.62
//
Query:       CCD25708.1  [L=456]
Description: hypothetical protein NDAI_0F03900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.1e-160  533.4   4.3   4.6e-160  533.2   4.3    1.0  1  Peptidase_C1_2  Peptidase C1-like family
    1.1e-07   32.1   1.2     0.0056   16.8   0.0    2.8  2  Peptidase_C1    Papain family cysteine protease


Domain annotation for each model (and alignments):
>> Peptidase_C1_2  Peptidase C1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  533.2   4.3  5.1e-164  4.6e-160       2     438 .]       3     452 ..       2     452 .. 0.95

  Alignments for each domain:
  == domain 1  score: 533.2 bits;  conditional E-value: 5.1e-164
                     S-HHHHHHHHHHHCTSHHHHHHHHHHTTS-HHHHHB-H.HHHHH-----SEE-SS-....S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B CS
  Peptidase_C1_2   2 ltkeklekfskefkadpknkvianaakksglleallnk.kvkkelervFstevetd....evtnqkqsGRCWlFaalnvlRlkllkklklkefel 91 
                     l++e+le++++ef++d ++++ ++++k+++++++llnk ++ ++++r+++t ++      +vtnqk+sGRCWlFaa+n+lR +++k+l+lk+fel
      CCD25708.1   3 LEIEQLESWESEFQTDLTYQLSSTVLKNYNADDILLNKsRLLSQDQRIYNTRISDIenitPVTNQKASGRCWLFAATNQLRIQIVKDLNLKDFEL 97 
                     7899*******************************99878999********9986446789********************************** PP

                     -HHHHHHHHHHHHHHHHHHHHHHCC..TS-TTSHHHHHHHH-TT-S-B-HHHHHHHHHHH---BGGGS-S-.CHHHBHHHHHHHHHHHHHHHHHH CS
  Peptidase_C1_2  92 sqaylffwDklEkanyFleniieta..depldsRlvkfllatpqqDGGqwdmlvslvekyGvvPkkvypes.fnseasrelnelLnkklrkdale 183
                     sqaylff+DklEkanyF+++ii+ta  +++ dsRl+++ll++p++DGGq++m++++v+kyG+vPk++y +  ++++asr+ln++L++klr++a++
      CCD25708.1  98 SQAYLFFYDKLEKANYFIDQIIDTAktETDDDSRLIQYLLEAPTNDGGQYSMFLNIVKKYGLVPKSIYNDLaYSTTASRKLNSILTSKLREFAET 192
                     *************************54556678*************************************87999******************** PP

                     HHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHC---S....SSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-CCCE....EEEE--T-TTS-T CS
  Peptidase_C1_2 184 LRklveegkdkeeieakkeelleeifrllaialgePp....ktFdfeyrdkdknyhkekdltpkeFyekyvkldledk....vslinaPtadkpy 270
                     LR  +++ ++   i++ ++++++ei++l++++++ Pp    ++F +ey dkdk++  ++  tp+eF+ ky++ldl+d+    vslin+P  +++y
      CCD25708.1 193 LRVNINDMDK---IKELRTSMQKEIYKLMTMFMEVPPikpnEKFVWEYIDKDKKIGRIEC-TPLEFAIKYAHLDLSDNkklpVSLINDP--RHEY 281
                     **99887666...***********************999999**************9987.**************9954555*******..9*** PP

                     TEEEEETT--SSTT---EEEEE--HHHHHHHHHHHHHTT--EEEEE-TTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTS----EEEEE CS
  Peptidase_C1_2 271 nklytvellgnvvggrkvlylnvevevlkklviaqlkdgeavwFGsdvgkemdrktGlldldlykleelldvdlklskAerldygeslmtHamvl 365
                     +kl++++ lgnv gg+ v+ylnv++++l+klv+++l++ +av+FGsd+ k md++ G++d++l++++ +++++l+++kA+r++y++s+mtHam++
      CCD25708.1 282 GKLIKIDRLGNVIGGDDVIYLNVDNDTLSKLVVKRLQNDKAVFFGSDTPKFMDKSRGVMDVQLWNYN-AIGYNLHQTKASRIKYHQSMMTHAMLI 375
                     ******************************************************************9.9************************** PP

                     EEEEE-TT.SSEEEEEEE-SBTTTSTBTTEEEEEHHHHHHHEEEEEEEGGGS-HHHHHHHHS...--EEE-TTSCCC CS
  Peptidase_C1_2 366 tgvdvddd.gkvtkwkvEnsWGedsGekGyfvmsdewfdeyvyevvvdkkylpeellealee...epivLeaWDplg 438
                     t+++v++  + +t++ vEnsWG+dsG++G++ m++++f+ey+y++vvd + lp+el+e++ +   epivL++WDp+g
      CCD25708.1 376 TACHVEEGkELPTRYCVENSWGKDSGKDGLYLMTQDYFEEYCYQIVVDMEDLPSELQEKFLSdkeEPIVLPIWDPMG 452
                     *****8875779*********************************************999555569**********8 PP

>> Peptidase_C1  Papain family cysteine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.2e-07    0.0056      13      55 ..      60     102 ..      49     227 .. 0.80
   2 !   12.7   0.3   1.1e-05       0.1     159     204 ..     364     412 ..     337     422 .. 0.77

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 6.2e-07
                   GSG---B-TSSBTHHHHHHHHHHHHHHHHHHSSS---B-HHHH CS
  Peptidase_C1  13 avtpvkdqgsCGsCWafsavgaledrlaiktkkklvslSeqel 55 
                   ++tpv +q+  G CW f+a+++l  +++   + k ++lS+  l
    CCD25708.1  60 NITPVTNQKASGRCWLFAATNQLRIQIVKDLNLKDFELSQAYL 102
                   59**************************999999999998766 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 1.1e-05
                   CETSS-EEEEEEEEEEEETTEEE...EEEE-SBTTTSTBTTEEEEESSS CS
  Peptidase_C1 159 csktelnhavlivGygvengkky...WivkNsWgtdwgekGYiriargk 204
                    +++ ++ha+li    ve+gk+    + v NsWg+d g++G + + ++ 
    CCD25708.1 364 YHQSMMTHAMLITACHVEEGKELptrYCVENSWGKDSGKDGLYLMTQDY 412
                   3445678999999999988665333389*************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 3402.41
//
Query:       CCD25709.1  [L=506]
Description: hypothetical protein NDAI_0F03910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-53  182.2   0.0    2.2e-53  181.5   0.0    1.4  1  Fe_hyd_lg_C  Iron only hydrogenase large subunit, C-terminal 


Domain annotation for each model (and alignments):
>> Fe_hyd_lg_C  Iron only hydrogenase large subunit, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.5   0.0   1.2e-57   2.2e-53       1     243 []     106     434 ..     106     434 .. 0.90

  Alignments for each domain:
  == domain 1  score: 181.5 bits;  conditional E-value: 1.2e-57
                  -EEEEEE-HHHHHHGGGGGT--T-S-HHHHHHHHHH.TT-SEEEETHHHHHHHHHHHHHHHHHHHHH..TS-SSEE----HHHHHHHHHH-GGGGGGB CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Fe_hyd_lg_C   1 kkvvvqvAPavrvalgeefglsvaattgklvaalrk.lGfdkVfdtafgadltimeeasellerlee..eeklpmitScCPgwvkyvekkypellpnl 95 
                  k+++v++AP++r++l++++++s ++++ ++++++++ +  ++V++t++g++lti +++++l+  ++e   ++ pm++  CPg+v y ek+ p+l+p l
   CCD25709.1 106 KILCVSIAPQCRISLADNYDMSIEEFDLCFMNFIKNyFQGKYVVGTQMGRNLTISRTNDKLIALKKEgkLDERPMLSAICPGFVIYTEKTKPNLVPLL 203
                  6799********************************9**************************9988774477************************* PP

                  --B--HHHHHHHHHHTHHHHHGGEEEEEEES-SSHHHHHTSTT-BBTBBSS-EEEEHHHHHHHHHHTT--GGGS-------TTSSSSSTSS-...... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...... RF
  Fe_hyd_lg_C  96 ssvkSPqqilgaliKkylaekekivvVsimPCtaKklEaareefksagrdvDavlTtrElaellkeagidlakleeeeldnplgessgagki...... 187
                   +vkSPqqi+g+l+ + lae+e+++++++mPC++KklEa+r++ ++   +v +v+T++E++++l+e ++d+++   ++ +n + e+s +g        
   CCD25709.1 204 LNVKSPQQITGSLLMDSLAEDEQMYHLTLMPCFDKKLEASRPDGEN---EVHCVITPKEFVSMLEELEVDFNSYRIQD-ENLFYEMSPEGWDprihws 297
                  *******************************************866...9*********************9997776.4555555555544566888 PP

                  ..................................TTEEEEE....EEE-.TSEEEEEEEESHHHHHHHHHHH.......................... CS
                  ..................................xxxxxxx....xxxx.xxxxxxxxxxxxxxxxxxxxxx.......................... RF
  Fe_hyd_lg_C 188 ..................................egvkeae....vele.gktlkvavvnGlknikkllekl.......................... 220
                                                    ++v e +     +++ g+  ++a ++G++ni++++++l                          
   CCD25709.1 298 snsgsssggyayqyilemqnlnpgtkileipgknSNVVEYRlidpNDINrGTIASSAELSGFRNIQNMVRNLdrksiknngakrkiqvlrkrntstqm 395
                  888888*********9999999999999999988444444443333333255569******************************************* PP

                  ................HTTSS--SEEEEESSTTSGGG-T CS
                  ................xxxxxxxxxxxxxxxxxxxxxxx RF
  Fe_hyd_lg_C 221 ................kageakydfiEvmaCpgGCigGg 243
                                   a+  k d+iEv a pgGCi+Gg
   CCD25709.1 396 qklslsnnsnainkplVADPYKTDYIEVNASPGGCINGG 434
                  ***************99999******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       763  (0.0425568); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 3860.80
//
Query:       CCD25710.1  [L=505]
Description: hypothetical protein NDAI_0F03920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.5e-105  352.6   0.0   1.9e-105  352.2   0.0    1.1  1  G6PD_C    Glucose-6-phosphate dehydrogenase, C-terminal domai
    2.8e-60  204.0   0.0    5.9e-60  202.9   0.1    1.5  2  G6PD_N    Glucose-6-phosphate dehydrogenase, NAD binding doma
  ------ inclusion threshold ------
        1.5    9.2   3.5         35    4.8   0.0    3.3  3  TSC22     TSC-22/dip/bun family


Domain annotation for each model (and alignments):
>> G6PD_C  Glucose-6-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.2   0.0  3.2e-109  1.9e-105       2     288 ..     201     486 ..     200     496 .. 0.96

  Alignments for each domain:
  == domain 1  score: 352.2 bits;  conditional E-value: 3.2e-109
                 HHHHS-STTSTTSSTTTEEEEEEEEEESS--TTTHHHHTTTHHHHHTTTTHHHHHHHHHH----SSSSHHHHHHHHHHHHTTB----G...GG.EEEEE CS
      G6PD_C   2 vlRfaNalfeplwnrnyidhvqitvketlgvegrggYydeaGalrDvvqnHllqllalvamepPasldaedirdekvkvLkslrplkleevekkvvrGq 100
                 vlRf+N+++++ wn+++ ++vqi++ke++g+egrggY+d++G++rDv+qnHllq+l+lv+me+P+s+++e+ir+ekvkvL++++p++    ++ +++Gq
  CCD25710.1 201 VLRFGNQFLNASWNKENLQSVQISFKEPFGTEGRGGYFDSIGIIRDVMQNHLLQILTLVTMERPQSFNPESIRNEKVKVLQAMKPIDV---ND-ILIGQ 295
                 89************************************************************************************98...55.9**** PP

                 E.....E--TGS-STTSTTS-TT----SEEEEEEEB-STTTTT-EEEEEEESSBSS-EEEEEEEE---SS-SS---.--EEEEEEESS-EEEEEEEEE- CS
      G6PD_C 101 YaagavkgkevkgYreeegvakdSkteTfvalkleidnerwagVPfylrtGKrLnekkteiriqfkkvpsdlfkkkerneLviriqpdeaislklnakk 199
                 Y  g++ + ++++Y+++e+v+k Sk+ Tf+a++++idnerw+gVP+++r+GK+Lne k+eir+q+k+    +f++  +neLvir+qpd a+++k+nak+
  CCD25710.1 296 Y--GKSIDGTKPAYLDDETVKKGSKCITFAAMTFHIDNERWRGVPIMMRAGKALNEGKVEIRLQYKSS-YGVFSDIPNNELVIRVQPDAAVYMKFNAKT 391
                 *..77788899*******************************************************95.56774555********************** PP

                 SSSE.....EEEEEEHHHHTT...---HHHHHHHHHHHT-GTTSB-HHHHHHHHHHHHHHHHHHHH...---EEEETTSSS-HHHHHHHHHHTX. CS
      G6PD_C 200 pgleleleeveldlsykerfk...lpeaYerLlldvlkgdqtlFvrsdeveaaWkivdpileawee...eklekYeagsrgPeeadellekdgrk 288
                 pgl+ + + ++ldl+y++r+k   +peaYe L+ d+l  d+++Fvr+de++ +W++++p+l+++e    +++e Y++g+rgP+  +e+++++g++
  CCD25710.1 392 PGLSNKSQVTDLDLTYSSRYKdfwIPEAYEVLIRDALLEDHSNFVRNDELDVSWELFTPLLNYLEGpdaPQPEVYPYGTRGPKGLKEYMKNHGYA 486
                 ***99***********************************************************7799989********************9975 PP

>> G6PD_N  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.9   0.1   9.9e-64   5.9e-60       1     177 []      19     198 ..      19     198 .. 0.94
   2 ?   -3.7   0.0       2.7   1.6e+04      50      85 ..     424     463 ..     415     468 .. 0.58

  Alignments for each domain:
  == domain 1  score: 202.9 bits;  conditional E-value: 9.9e-64
      G6PD_N   1 vifGasGdLakrkllPaLyelaregllpeevrivgvarsklsdeefrekvkealkkekekeeldeekleeflkrleyvsgdleeeeeyekLkekleele 99 
                 v+fGasGdLak+k++PaL+ l+reg l+++++i+g+arskl+ +e++e+++ +lkk++e+   ++ k++ef+k ++yvsg++++++ y +L++++eele
  CCD25710.1  19 VVFGASGDLAKKKTFPALFGLYREGYLDPSTKIIGYARSKLTIAELTERIQPHLKKTNEQ---SDLKIKEFFKMVTYVSGNYDTDDGYITLRAHIEELE 114
                 8*****************************************************654433...5679******************************99 PP

      G6PD_N 100 a.......nrlfYlavppslfeevaeklkkaglakeeewkrvvvEKPfGkdlesarelneelkkvfkeeqiyrIDhYLGketvqN 177
                 +       +rlfY+a+pps+f +va+++kk  + +e++++rv+vEKPfG+dlesar+l+++l+ +fke++i+rIDhYLGke v+N
  CCD25710.1 115 EkcnveipHRLFYFALPPSVFLSVAKQIKKL-VYAENGFTRVIVEKPFGHDLESARALQNDLAPLFKEKEIFRIDHYLGKELVKN 198
                 44556666**********************7.55569***********************************************9 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.7
      G6PD_N  50 vkealkkekekeeldee...kleeflkrleyvsg.dleee 85 
                 +++al +++++   ++e   ++e f+  l+y++g d+ ++
  CCD25710.1 424 IRDALLEDHSNFVRNDEldvSWELFTPLLNYLEGpDAPQP 463
                 5555544333332222244488999999999888665555 PP

>> TSC22  TSC-22/dip/bun family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.084     5e+02      20      37 ..      58      76 ..      57      82 .. 0.78
   2 ?    1.9   0.1     0.048   2.9e+02      18      30 ..     105     117 ..     104     120 .. 0.87
   3 ?    4.8   0.0    0.0058        35      24      53 ..     193     222 ..     192     226 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.084
       TSC22 20 kekIkeLeerns.eleeEN 37
                k +I+eL+er++ +l++ N
  CCD25710.1 58 KLTIAELTERIQpHLKKTN 76
                789*******974556555 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.048
       TSC22  18 vLkekIkeLeern 30 
                 +L+ +I eLee+ 
  CCD25710.1 105 TLRAHIEELEEKC 117
                 69********986 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0058
       TSC22  24 keLeernseleeENslLkalaspeqleqls 53 
                 keL+++ + l+  N++L a  ++e l++++
  CCD25710.1 193 KELVKNLTVLRFGNQFLNASWNKENLQSVQ 222
                 79************************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       531  (0.0296168); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 3991.48
//
Query:       CCD25711.1  [L=1596]
Description: hypothetical protein NDAI_0F03930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      9e-33  113.2   0.8      9e-33  113.2   0.8    2.9  3  ATG2_CAD  Autophagy-related protein 2 CAD motif
    8.4e-32  109.4   0.1    2.1e-31  108.1   0.1    1.8  1  ATG_C     Autophagy-related protein C terminal domain
  ------ inclusion threshold ------
       0.12   11.3   0.0       0.18   10.7   0.0    1.2  1  Etmic-2   Microneme protein Etmic-2


Domain annotation for each model (and alignments):
>> ATG2_CAD  Autophagy-related protein 2 CAD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2      0.73   4.3e+03      37      71 ..     200     239 ..     172     273 .. 0.54
   2 ?   -2.1   0.3      0.48   2.9e+03      46     124 ..     609     691 ..     579     692 .. 0.66
   3 !  113.2   0.8   1.5e-36     9e-33       1     155 []     794     931 ..     794     931 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.73
    ATG2_CAD  37 eqfsaklslrkaslllIDdvknlkeksskkskke.....r 71 
                 e++s+++  +++  +   d+k l++k++++s+k      +
  CCD25711.1 200 EEVSLTTRDKNIRHISMKDIKILHKKKTDDSAKVsssgaS 239
                 3344444444444444445555555555444444433332 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.48
    ATG2_CAD  46 rkaslllIDdvknlkeksskkskke....rsssssssqvsylskrGyvsigsissakvgvtvnedkdgeksvdvevnddllvL 124
                 ++++l+l   ++nl+ +++++++++    + + s+ s v++ +++    i +++++++ ++   ++++  s++v+++d l+ L
  CCD25711.1 609 SSIKLYLLPMFDNLQVPDTREKSNAlltrSIKFSNASAVTHQQSSCVLFILQLDTMNFVINNFLNNQKFGSLEVNLKDSLFAL 691
                 44555555555555555555555556666666677777777777777888999999999966666578888888888888776 PP

  == domain 3  score: 113.2 bits;  conditional E-value: 1.5e-36
    ATG2_CAD   1 dlklrDcvigLnPlrlksklllvltkakldvslgkdeqfsaklslrkaslllIDdvknlkeksskkskkersssssssqvsylskrGyvsigsissakv 99 
                 ++k+ ++++ L+P+rl+s+l++vl++++ +++    +++++++ l++ +lllIDdv+n+k+ ++         +  s+++++++++G+v++g+++s+ +
  CCD25711.1 794 EIKFLNSSLNLHPYRLSSALIIVLDRFTHNGRS---PTLHVRSMLKRGTLLLIDDVSNIKTLDK---------QIPSTLIDFYTRQGFVTLGRLDSLLL 880
                 5899***************************99...68*******************9994444.........489*********************** PP

    ATG2_CAD 100 gvtvnedkdgeksvdvevnddllvLelCADStqtLiqllndLkpPttppkeeKykt 155
                 + +  ++     sv+++ + d+l L+lCADS++tL+q+++dLk+P t+p+++K+k+
  CCD25711.1 881 TTQRVKN-----SVTIDAKLDHLNLSLCADSFHTLVQTCIDLKYPETFPDDQKFKV 931
                 *999999.....9*****************************************96 PP

>> ATG_C  Autophagy-related protein C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.1   3.6e-35   2.1e-31       1      96 []    1496    1592 ..    1496    1592 .. 0.97

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 3.6e-35
       ATG_C    1 vslyasqPedlreGlqqAysslskglksaaqtilavpsevaes.kgakgavkavvravPvavlrPligateavsktlqGvrnqldpearkesedKYK 96  
                  vslya+qP d++ Gl++Ay+sl+k+++ a++++++++ e +++ +ga++a+  v++a+Pva++rPlig++ea+sktlqG+ nqld++++++ edKYK
  CCD25711.1 1496 VSLYADQPLDIHRGLEEAYNSLEKHMHIAYDAVWKAKGELRKNeSGATAAAVYVAKAAPVAIIRPLIGLSEAISKTLQGIANQLDKDTIQDLEDKYK 1592
                  699************************************99875899999**********************************************9 PP

>> Etmic-2  Microneme protein Etmic-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   3.1e-05      0.18     107     156 ..     111     160 ..     101     173 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 3.1e-05
     Etmic-2 107 vadetrkvvqlresegasgasgpgpapaekppsgqgsaeeapkgeggqek 156
                 + d t+ vvq+ +s g+  + gp     e  ps +  ++e  k +gg  k
  CCD25711.1 111 IHDLTKSVVQFTDSAGSESSDGPDYDNEEADPSTKNKTDEETKKQGGTMK 160
                 6799******************************************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.48
# Mc/sec: 9950.41
//
Query:       CCD25712.1  [L=978]
Description: hypothetical protein NDAI_0F03940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-69  234.4   0.0    1.2e-69  234.4   0.0    2.8  3  ANTH             ANTH domain
    5.2e-50  169.7   2.6    5.2e-50  169.7   2.6    5.4  4  I_LWEQ           I/LWEQ domain
  ------ inclusion threshold ------
        5.6    6.6  47.5          2    8.1  40.3    2.8  2  YkyA             Putative cell-wall binding lipoprotein


Domain annotation for each model (and alignments):
>> ANTH  ANTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.4   0.0     2e-73   1.2e-69       1     273 [.       8     271 ..       8     273 .. 0.96
   2 ?   -6.0   8.3         3   1.8e+04     143     179 ..     386     425 ..     370     437 .. 0.59
   3 ?  -11.1  13.7         3   1.8e+04      71     168 ..     403     492 ..     385     533 .. 0.53

  Alignments for each domain:
  == domain 1  score: 234.4 bits;  conditional E-value: 2e-73
                 HHHHHHHHHT-SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS.SHHHHHHHHHHHHHHHHHS-CHHHHHHHHTT-----TT---TSHHHSTH CS
        ANTH   1 dlevavvKAtshdevPpkekhvreilvltssrekvaalvwalsrrlkltrnwvvalKaLilvHklLreGhpsveqellsarrrisellnlssfddsssk 99 
                 dl++a +KA+s++e++pk+khvr+++v+t++ ++ a    ++ + ++ ++++v+ +KaLi++Hk+++eGhps++++++ +r++i++l++++        
  CCD25712.1   8 DLQKALKKACSIEETAPKRKHVRACIVYTWE-NQTAGPLFQTLKNMPFMNDEVQLFKALIVLHKIIQEGHPSALKQAIKEREWIRSLGRVHP------G 99 
                 799****************************.666666666678899999******************************************......7 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHSS-....CCCS--S.....TTSHCC...C--HHHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHH CS
        ANTH 100 swdysafiraYakyLderlefhrklkvdk.gelereeegslvavedpner..ktlsmeklldkieklqklldrllkckptgnalsnevilaalvllvke 195
                 +  y+++ir+Y++yL  +l+fh ++k ++ g +e+ee+ sl++v dp+e+  ++l+++ l+d++++++++++++++    +++++ e+++++l +l++e
  CCD25712.1 100 GASYGRLIREYVNYLVLKLDFHAHHKGFNnGVFEYEEYVSLISVADPDEGyeTILDLMALQDSLDDFSQIVFASIQ----SDRRNAECKISSLLPLIAE 194
                 99**************************99**********************************************....99999************** PP

                 HHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--GGG..S--GGGS-CHHCCCCCH CS
        ANTH 196 slklYkaineglinLlekffelskheadkaldiykrfskqfeelkeFyevckslgilrsle.iPelekippnllealee 273
                 s+++Yk+i+++l+++++++++  ++ ++++ ++ +r++ q+ +  eFy +c+s+++l++l+ iP+l+ +ppnl +++++
  CCD25712.1 195 SYGIYKFITSMLRAMHRQLND--QEGDEALKPLEERYALQHARMFEFYADCSSIKYLTTLVtIPKLPTNPPNLAASNDD 271
                 *********************..789999999*****************************************999986 PP

  == domain 2  score: -6.0 bits;  conditional E-value: 3
                 TTSHCC.C--HHHHHHHHHHHHHHHHH....HHTT---GGG CS
        ANTH 143 edpnerktlsmeklldkieklqklldr....llkckptgna 179
                 + ++er +l++++++ + +++q++l++    +++ + ++++
  CCD25712.1 386 RLEQER-QLQLQQQQAQQQQFQQQLQQsqneMMQLQLQQES 425
                 223344.8888888888888888887611114555555554 PP

  == domain 3  score: -11.1 bits;  conditional E-value: 3
                 CHHHHHHHHTT-----TT---TSHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHSS-...CCCS--S.....TTSHCC.C--HHHHHHHHHHHHHHHH CS
        ANTH  71 psveqellsarrrisellnlssfddssskswdysafiraYakyLderlefhrklkvdkgelereeegslvavedpnerktlsmeklldkieklqklld 168
                 ++++q+l+++++++ +l+      ++s++++d  a+  +Y k  d+ l    +++v+  +le e +  ++ v+++ ++k+ ++  l+d+++ ++k  d
  CCD25712.1 403 QQFQQQLQQSQNEMMQLQLQ----QESKHQNDLMALTTQYEK--DQTLLEQYDQRVQ--QLENEIRTMDQNVSKQIANKDDQLISLQDQLTVWEKKYD 492
                 33333333333333333322....224556666666666654..2222222222222..122222222223333333345555555555555555544 PP

>> I_LWEQ  I/LWEQ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -24.4  29.9         3   1.8e+04      73     140 ..     394     441 ..     373     580 .. 0.67
   2 ?    3.8   0.6      0.01        63      37     123 ..     647     734 ..     618     740 .. 0.65
   3 !    5.2   1.2    0.0037        22      12      62 ..     722     778 ..     712     816 .. 0.73
   4 !  169.7   2.6   8.7e-54   5.2e-50       1     152 [.     821     971 ..     821     972 .. 0.96

  Alignments for each domain:
  == domain 1  score: -24.4 bits;  conditional E-value: 3
      I_LWEQ  73 rLeaaskaVkkatkelvkavkeakekqeeeeseeeeldisklslvqakrqemeaqvkilklekeLeea 140
                 +L++  ++ ++  ++l ++ +e+ + q ++                    e + q + ++l ++ e+ 
  CCD25712.1 394 QLQQQQAQQQQFQQQLQQSQNEMMQLQLQQ--------------------ESKHQNDLMALTTQYEKD 441
                 333333333333333333333333333332....................222222222222222222 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.01
      I_LWEQ  37 akeeeLivaakevaastaqLvvasrvKadknskslkrLeaaskaVkkatkelvkavkeakekqeeeeseeeeld..isklslvqakrqe 123
                 +++ ++i   +  +++ a Lv+ +++ ++ ns +l++ e+ ++aVk++++e     ++ ++++   + +e+++d  i++   vq k qe
  CCD25712.1 647 GDQISVILGVNDFSTAMANLVTNCKAFSE-NSLTLEKSEEMINAVKRCAREAQYFFEDLTSENLGPQDDETKTDtvINANVDVQEKLQE 734
                 55667778888999999999999999665.58888888888888888887766666665555444333444455434555555555555 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0037
      I_LWEQ  12 isAAkaVaaaanlLveaadavvqgk......akeeeLivaakevaastaqLvvasrv 62 
                 i+A  +V +  + L+   +  ++        +++ eLi++a+++++s  qL +   v
  CCD25712.1 722 INANVDVQEKLQELTVIMEPYLNAPsmntsnNAHHELISTAETITKSSQQLRADIDV 778
                 5555555555555555544444433344444999*****************876655 PP

  == domain 4  score: 169.7 bits;  conditional E-value: 8.7e-54
      I_LWEQ   1 ykknsqWteGLisAAkaVaaaanlLveaadavvqgk...akeeeLivaakevaastaqLvvasrvKadknskslkrLeaaskaVkkatkelvkavkeak 96 
                 ykkns+WteGLisAAkaV+a++n+L+++a ++++g+   a++ee+iva+kevaast qLv+asrvK++++sk++ +Le++sk+V +a+k+lv++v++  
  CCD25712.1 821 YKKNSRWTEGLISAAKAVGATTNMLITTAGKLTSGEggeASPEEFIVASKEVAASTVQLVAASRVKTHAHSKAQVKLEDCSKDVGNACKSLVSHVMKGV 919
                 9**********************************9999************************************************************ PP

      I_LWEQ  97 ekqeeeeseeeeldisklslvqakrqemeaqvkilklekeLeearkkLaeirkakY 152
                 +++ ++  e +++d++  s+++ k++eme+qv+il+le++L++ark+L+eirk++Y
  CCD25712.1 920 DDTFSK--EMKPIDFT--SEHTVKTAEMEQQVDILRLEQSLSAARKRLGEIRKHAY 971
                 998886..45678887..99***********************************9 PP

>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  40.3   0.00033         2      16     182 ..     391     556 ..     376     560 .. 0.91
   2 ?    1.8   0.6     0.028   1.7e+02     120     169 ..     686     735 ..     669     745 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00033
        YkyA  16 lEkefeeqqekLtelekkeqelyeeiielgmdefdkikklsdealenveeReellekekesieeakeefekikeeieei.edeelkkeaeelieameer 113
                  + ++++qq + ++ +++ q+  +e+++l+ ++ +k ++    +++  e+ ++lle++ + +++ ++e+ ++++++++   +  + +++ +l++++   
  CCD25712.1 391 RQLQLQQQQAQQQQFQQQLQQSQNEMMQLQLQQESKHQNDLMALTTQYEKDQTLLEQYDQRVQQLENEIRTMDQNVSKQiAN--KDDQLISLQDQLTVW 487
                 3446778888888999***********************************************************9987333..578************ PP

        YkyA 114 yeaydklykaYkealeldkeLYemLkkeeltleeleeqiekiNesyeevkeaneqFneatkkyneekke 182
                 +++yd+l k Y+++ +++ +L  ++kk +++++  +e i +  +  +++k++  q+ + tk+  +++ e
  CCD25712.1 488 EKKYDSLAKLYSQLRQEHLQLLPKFKKLQVKVNSAQESIAQKEQLEQKLKKKDLQLIDLTKERDRARLE 556
                 ************************************************************987776655 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.028
        YkyA 120 lykaYkealeldkeLYemLkkeeltleeleeqiekiNesyeevkeaneqF 169
                 +++a k    + + ++e L++e+l  ++ e +++++ +++ +v+e+ +++
  CCD25712.1 686 MINAVKRCAREAQYFFEDLTSENLGPQDDETKTDTVINANVDVQEKLQEL 735
                 55555555566677899999999999999999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (978 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3874  (0.216075); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                       116  (0.00646996); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.13u 0.33s 00:00:01.46 Elapsed: 00:00:00.51
# Mc/sec: 5819.37
//
Query:       CCD25713.1  [L=108]
Description: hypothetical protein NDAI_0F03950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-26   92.7   0.5    2.1e-26   92.3   0.5    1.2  1  SUI1      Translation initiation factor SUI1


Domain annotation for each model (and alignments):
>> SUI1  Translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.5   1.1e-30   2.1e-26       3      75 ..      24      97 ..      22      99 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 1.1e-30
        SUI1  3 pkihirleqrggrKkvTtvsgleafgidlkklakelkkkfacsgsvvkdg..geeiqvQGdqrkkvaelLtekyg 75
                ++ihir++qr+grK++Ttv+g+ + ++dlk+++k lkk fac+g++vkd+  ge iq+QGdqr kv+e+++++ g
  CCD25713.1 24 NYIHIRIQQRNGRKTLTTVQGV-PAEYDLKRILKVLKKDFACNGNIVKDAemGEIIQLQGDQRAKVCEFMISQLG 97
                79********************.999**********************77445*****************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 777.37
//
Query:       CCD25714.1  [L=199]
Description: hypothetical protein NDAI_0F03960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-12   45.7  13.3    5.3e-12   45.7  13.3    1.9  2  Cir_N     N-terminal domain of CBF1 interacting co-repressor 
    3.4e-09   37.5   7.3    3.4e-09   37.5   7.3    2.4  2  CWC25     Pre-mRNA splicing factor


Domain annotation for each model (and alignments):
>> Cir_N  N-terminal domain of CBF1 interacting co-repressor CIR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7  13.3   5.9e-16   5.3e-12       1      37 []      11      47 ..      11      47 .. 0.99
   2 ?   -2.8   0.3      0.87   7.8e+03      18      26 ..     110     118 ..     107     125 .. 0.50

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 5.9e-16
                SS-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Cir_N  1 SWHPgllkNqerVWkaEqkaleEkkkieerkkeieeE 37
                SW+P+l+kN ++VW+ Eq+ l+E++k+ erkkeie+E
  CCD25714.1 11 SWNPKLMKNRKKVWETEQEILKEEQKLLERKKEIEKE 47
                9***********************************9 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.87
                 HHHHHHHHH CS
       Cir_N  18 qkaleEkkk 26 
                 q+   E+ k
  CCD25714.1 110 QESNTEENK 118
                 333334333 PP

>> CWC25  Pre-mRNA splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   1.3     0.094   8.5e+02      23      47 ..      28      49 ..      13      79 .. 0.42
   2 !   37.5   7.3   3.7e-13   3.4e-09       3      99 ..      78     156 ..      76     158 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.094
       CWC25 23 eeyllGKkrvdkllegkdkaekkkk 47
                +e l + +   klle k++ ek+++
  CCD25714.1 28 QEILKEEQ---KLLERKKEIEKERQ 49
                33333333...33444333222221 PP

  == domain 2  score: 37.5 bits;  conditional E-value: 3.7e-13
       CWC25   3 erleWMYegpkeagaaeeeneeyllGKkrvdkllegkdkaekkkkakaskaesaaeqggaarlekvansardtank...lreDPllaIkkqeqealkal 98 
                 ++leWMYe++     + +e+e+yllGKk+ d+++ + ++++++++                ++ k + ++ +t++k    +eDP++++k++   ++k  
  CCD25714.1  78 TGLEWMYENN-----VPDEKEDYLLGKKKLDTSVIKRQESNTEEN----------------KMLKKTGERTSTKKKfdlSSEDPMAKMKQAYLLKKKST 155
                 68******87.....78889**********999888555433331................1222333444444444559**********988777766 PP

       CWC25  99 l 99 
                 l
  CCD25714.1 156 L 156
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1972  (0.109989); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1484.35
//
Query:       CCD25715.1  [L=293]
Description: hypothetical protein NDAI_0F03970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-07   31.1  11.0    1.3e-07   31.1  11.0    2.5  2  NAP       Nucleosome assembly protein (NAP)


Domain annotation for each model (and alignments):
>> NAP  Nucleosome assembly protein (NAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1  11.0   7.1e-12   1.3e-07      66     269 ..      33     242 ..       4     243 .. 0.64
   2 ?   -4.6   1.2      0.56     1e+04     235     240 ..     269     274 ..     247     286 .. 0.40

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 7.1e-12
                 ..............--SSSSTTSTTHHHHHHHTSHHHHTT--HHHHHHHTTEEEEEEEE-------E.....EEEEEEE.-S-SSB--SEEEEEEEE-- CS
         NAP  66 eeeeeeekeeekeeekkeeakgipeFWltvlknvellaeliqerDepiLkhLkdirveyllskekeg.....FtleFeF.deNpyFtnevLtktyilks 158
                  e  + +k     +++++  + ip FW  vl++++ +a++i+  D + +  ++ i++e l  k++++     F+++F+F    + F++++ tkt+ + +
  CCD25715.1  33 VELYRLKKMVPFYKQRDSYINDIPGFWRVVLSQHSDFANYIRASDFKYIDQIEKIQLEWLILKDENEsnvrdFSVTFYFnGIEDDFEEQIVTKTFKIVK 131
                 333455556666678888999*************************************98777755557888*******766888**********9984 PP

                 --........................----EEEEEE----B-TT--TTS----------...-------------GGGGS--B---------------H CS
         NAP 159 ev................dkedpfiydgpeiekaegckIdWkegkdvtvktvkkkqknkktketrtvtkkvpkeSFFnfFsppkvpeeeeeeeeeeeel 241
                 +                  +ed+   + ++i ++e ++I+W    d     v   +++  +++++        +SFF +F+              +   
  CCD25715.1 132 SDtindnkstkksnvnedISEDENEEEIEDILTSEPVDIKWPASYDSINPSVIVDKRSP-EGKKKY---RQGMKSFFGWFKWTGK----------KPGK 216
                 44222111111111111111112222223345566777777766655554444444443.222222...23345*******5411..........1222 PP

                 HHHHHHHHHHHHHHHHTHHHHHHHHHHT CS
         NAP 242 eelleadyeigealkdkiiPkAveyFtg 269
                 e  +    +++  + +++ P+ v+y+t 
  CCD25715.1 217 E--FPHGDDLAVLISEDLYPYCVKYYTE 242
                 2..3344589999*************96 PP

  == domain 2  score: -4.6 bits;  conditional E-value: 0.56
                 ------ CS
         NAP 235 eeeeee 240
                 ee++++
  CCD25715.1 269 EEDDDD 274
                 111222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1111  (0.0619666); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2170.64
//
Query:       CCD25716.1  [L=791]
Description: hypothetical protein NDAI_0F03980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.5e-140  467.8   0.9   3.2e-140  466.7   0.9    1.5  1  tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
    1.4e-08   34.0   1.4    7.2e-06   25.0   0.1    2.4  2  tRNA-synt_1g  tRNA synthetases class I (M)
    6.2e-05   21.4   0.0    0.00015   20.2   0.0    1.6  1  tRNA-synt_1   tRNA synthetases class I (I, L, M and V)
     0.0072   15.3   0.6      0.048   12.6   0.1    2.4  3  tRNA-synt_1f  tRNA synthetases class I (K)
  ------ inclusion threshold ------
       0.26   10.1   4.5       0.49    9.2   0.0    2.7  3  tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic d


Domain annotation for each model (and alignments):
>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  466.7   0.9  8.8e-144  3.2e-140       3     300 ..      79     496 ..      77     497 .. 0.98

  Alignments for each domain:
  == domain 1  score: 466.7 bits;  conditional E-value: 8.8e-144
                   --SBTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHH.TT-EEEEEEEBB--SHHHHHHHHHTTS-........................... CS
  tRNA-synt_1e   3 kpleekkvtlYvCGptvydashlGhaRslvafDilrrilqa.lgYdvqfvqnvtDidDkiikrareeeks........................... 71 
                    ++  k+v++Y+CGptvydash+GhaR++v++Di+rri+++ +gYd++fvqnvtDidDkii rar+++++                           
    CCD25716.1  79 PQSGTKQVSWYSCGPTVYDASHMGHARNYVSIDINRRIMENyFGYDINFVQNVTDIDDKIIIRARQNYLFeqyvkenstaidisyiktalseyitkn 175
                   677899*********************************999******************************************************* PP

                   ................................................................................HHHHHHHHHHHHHHHHH CS
  tRNA-synt_1e  72 ................................................................................vkelaekfieefkkdle 88 
                                                                                                   +++l++ +++++ kd++
    CCD25716.1 176 lkleggdefqswlssidlekekelnpklpmhikaietallaltsipknpeeinnfynnvkdvlvplldeqlgstlndpelFRKLPAFWERQYDKDMA 272
                   ************************************************************************************************* PP

                   HTT----SB--BGGGGHHHHHHHHHHHHHTTSEEE-TT.....S-EEE-GGG-TTTTTTTT--HHHHHHT----S-......-S-SSTT-EEEEEE- CS
  tRNA-synt_1e  89 aLnvlkptleprvsekvdeiielvekliekgyaYavsd.....gdvyfdvskkeeYgklskqnleelelgaegevs......eekkdkkDfaLWkas 174
                   +Lnv +p++++rvse+++eii +vek+i++gyaYa+sd     ++++fd  ++++Y+k++++n+++l+l+++ e+s      ++kk+k+DfaLWkas
    CCD25716.1 273 KLNVMPPSITTRVSEYIPEIIVFVEKIIANGYAYATSDgsvyfDTIKFDSASNHDYAKCQPWNKGQLDLIEDAEGSlsnftnSNKKSKNDFALWKAS 369
                   **************************************88888888888999**********************99999*9999************* PP

                   -TTS--B--TTSSEEE-SSHHHHHHHHHHH-SSEEEEEEEGGGTTTHHHHHHHHHHHHSS.S--EEEEEEE--EEETTBE--TTTT---BHHHHHTT CS
  tRNA-synt_1e 175 kegepswdsPwgkGRPGWhieCsvmaskllgseidihsGGiDLafPhhenelaqseaafd.kqlvkyflhnghlkiegekmsksLknfitikdvlkk 270
                   k+gep+w+sPwg GRPGWhieCsvmas++ g+++dihsGGiDLafPhh+nelaqsea+fd  q+v+yflh+ghl+ieg+kmsksLknfiti+++l+k
    CCD25716.1 370 KPGEPQWESPWGTGRPGWHIECSVMASDVHGQSMDIHSGGIDLAFPHHDNELAQSEAKFDnCQWVNYFLHTGHLHIEGQKMSKSLKNFITIEEALQK 466
                   ************************************************************99*********************************** PP

                   S-HHHHHHHHHSS-TTS-EEE-HHHHHHHH CS
  tRNA-synt_1e 271 fdprqlRllllsahyrsqldfkeelleeak 300
                   +++rqlRl+++s+++++qldfke+l++e+k
    CCD25716.1 467 YSTRQLRLAFASVQWNNQLDFKESLINEVK 496
                   ***************************997 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1   0.00038       1.4      12      75 ..      97     160 ..      91     173 .. 0.77
   2 !   25.0   0.1     2e-09   7.2e-06     308     366 ..     430     489 ..     415     510 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00038
                   S---HHHHHHHHHHHHHHHHHHHT.T-EEEEEEEE---SHHHHHHHHHTTS-HHHHHHHHHHHHH CS
  tRNA-synt_1g  12 gklHlGhllevisaDifaRykrlr.geevlfvcgtDehGtpielkAekegvtpeelvekvheeik 75 
                   ++ H+Gh+++++s Di  R      g+++ fv        +i ++A+++ +  e++v++++++i+
    CCD25716.1  97 DASHMGHARNYVSIDINRRIMENYfGYDINFVQNVTDIDDKIIIRARQNYL-FEQYVKENSTAID 160
                   678****************865544*******9888888899999987544.5666666666555 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 2e-09
                   T----S-EEEE--EEE--------------HHHHHHHH-HHHHHHHHHH.HS-TTS-EEE CS
  tRNA-synt_1g 308 elklpkkvvaheyltvegkKlSkSrgvvvkakealerldadllRYylaa.eapekkDldf 366
                   +++ ++    +++l +eg+K+SkS +++++++eal+++++ +lR  +a+ + +++ D++ 
    CCD25716.1 430 NCQWVNYFLHTGHLHIEGQKMSKSLKNFITIEEALQKYSTRQLRLAFASvQWNNQLDFKE 489
                   55667777889*********************************9998744444444443 PP

>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   4.2e-08   0.00015     520     596 ..     406     482 ..     392     488 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 4.2e-08
  tRNA-synt_1 520 lleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKmSKslgNvidpldvikkygadalRltlilsdvg 596
                   + G+D  +    + + +s a +++  + + ++h   +  eG+KmSKsl+N i  ++ ++ky++  lRl+ ++ +  
   CCD25716.1 406 HSGGIDLAFPHHDNELAQSEAKFDNCQWVNYFLHTGHLHIEGQKMSKSLKNFITIEEALQKYSTRQLRLAFASVQWN 482
                  55566666666666666666666666667777777778889****************************99876655 PP

>> tRNA-synt_1f  tRNA synthetases class I (K)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.1   3.9e+03      37      73 ..      99     136 ..      87     159 .. 0.71
   2 ?   -0.5   0.0      0.13   4.5e+02      50     121 ..     171     244 ..     163     271 .. 0.81
   3 !   12.6   0.1   1.3e-05     0.048     278     340 ..     446     506 ..     440     524 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.1
  tRNA-synt_1f  37 iHiGnlrevltadlvaralrkr.geevrlilisDdmDg 73 
                    H+G +r+ ++ d+ +r +++  g +++++  + d+D 
    CCD25716.1  99 SHMGHARNYVSIDINRRIMENYfGYDINFVQNVTDIDD 136
                   69999999999998888888875777888887777775 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.13
  tRNA-synt_1f  50 lvaralrkr.geevrlilisDdmDglRkvpenlpek.llekylgkpltsiPdpkgkhesyaehfnaelvesLde 121
                   ++ ++l+   g+e++  l+s d+ + + + ++lp +  + +    +ltsiP+  ++ +++ +  +  lv  Lde
    CCD25716.1 171 YITKNLKLEgGDEFQSWLSSIDLEKEKELNPKLPMHiKAIETALLALTSIPKNPEEINNFYNNVKDVLVPLLDE 244
                   56666666624558888888889999999999999875556666799*****99999***99999999988875 PP

  == domain 3  score: 12.6 bits;  conditional E-value: 1.3e-05
  tRNA-synt_1f 278 ggekmssSkGnvltledwlevaepevlrflilrrkPkkakkldldleilrlvdeYdklerkyf 340
                   +g+kms+S  n++t+e++l+ +++  lr+ +++ + +++++  ++ ++++ v   +++ +++f
    CCD25716.1 446 EGQKMSKSLKNFITIEEALQKYSTRQLRLAFASVQWNNQLD--FKESLINEVKSLETTFNNFF 506
                   456****************************9966666555..55446666665555555555 PP

>> tRNA-synt_1c  tRNA synthetases class I (E and Q), catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00014      0.49      47      97 ..     257     308 ..     249     327 .. 0.84
   2 ?   -2.8   0.1      0.61   2.2e+03     238     304 ..     461     524 ..     440     533 .. 0.57
   3 ?    1.3   0.7     0.035   1.3e+02      75     115 ..     694     735 ..     667     763 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00014
                   C--HHHHHHHHH.HHHHTT---SSEEEEGGGGHHHHHHHHHHHHHTTSEEEE CS
  tRNA-synt_1c  47 rekeeaeesile.dlkwlgikwdekptyqsdrfdelkkyaeeLikkGkAYvc 97 
                   r+ + + e++++ d++ l++ +    t+ s++  e+  ++e++i++G+AY  
    CCD25716.1 257 RKLPAFWERQYDkDMAKLNVMPPSITTRVSEYIPEIIVFVEKIIANGYAYAT 308
                   666666666664279999999988899***********************86 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.61
                   EETTSB-SHHHHHHHHHTTSSSSTT-TTSCBHHHHHHCTB-HHHHHHHHHHHCCCSSS.EEEEHHHH CS
  tRNA-synt_1c 238 nlekkklSKRklsllvdekqvkewddlreallnflrrlGwtpekerelftreeliksfdlnresksl 304
                    +  +k S R+l l  ++ q +++ d +e l+n +  l  t    +++f+++   + + ++++s+ +
    CCD25716.1 461 EEALQKYSTRQLRLAFASVQWNNQLDFKESLINEVKSLETT---FNNFFKNIRALNHDYISQLSHDN 524
                   44445666666666666666666666666666666666555...45555555555555555555555 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.035
                   GGGHHHHHHH.HHHHHHTTSEEEE-STHHHHHHHHCCSSHSS CS
  tRNA-synt_1c  75 sdrfdelkky.aeeLikkGkAYvcectkeeleeereeqeklg 115
                   +d ++e+ k+  e+L+k+    + + ++e+l++++ee+++ +
    CCD25716.1 694 TDEKNEMLKLnEEKLVKEQAKAQRKLEQERLKKQKEEERREK 735
                   344444444404556666555556677788888777755444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1836  (0.102404); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.75u 0.27s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 5316.98
//
Query:       CCD25717.1  [L=417]
Description: hypothetical protein NDAI_0F03990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   6.4e-123  410.4   0.4   7.4e-123  410.2   0.4    1.0  1  RNA_pol_I_A49  A49-like RNA polymerase I associated factor
  ------ inclusion threshold ------
      0.083   12.4   0.1        1.2    8.6   0.0    2.1  2  Zwint          ZW10 interactor


Domain annotation for each model (and alignments):
>> RNA_pol_I_A49  A49-like RNA polymerase I associated factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.2   0.4  8.3e-127  7.4e-123       1     385 []      35     413 ..      35     413 .. 0.98

  Alignments for each domain:
  == domain 1  score: 410.2 bits;  conditional E-value: 8.3e-127
                    -TT-EEEEEE......E-----EEEEEE-SSEEEEEE--HHHHHHE...EEEEEEEETTTTEEEEEEE-EEEEEEEESSTTTXXXXXX..XXXXXX CS
  RNA_pol_I_A49   1 peslkFslykekekskkrkkselllvgeterleYvgknegegssaenllrylvGvydketgelelypaplftlrpsvkakkseseeeeedesktya 96 
                    pe+++F+ly+ k+ +++++k+ ++l+ge+erleY+g +++  s++    + ++G+++k++++++ly+ap+++ ++  k++k++ ++    ++ + +
     CCD25717.1  35 PEDTTFELYR-KHVKSSNAKDSFILHGENERLEYEGMTDDIVSNST---QSVIGIFNKSKNTIQLYKAPIISSKVIAKSSKNLRGPVI--KHSDSR 124
                    799*******.88999999************************998...9************************************99..888999 PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  RNA_pol_I_A49  97 ekraaLgeaFGtkKakkalrsrernkvdsealeevedailesikeataslptkeelqaavassrplPpanldAtepedVYplsdlissaelealev 192
                      r+aLgeaFGtkKakka++++ern++ds++l+e + +i++s+++a+++lpt+e+lq++v+++rp+P anldAt++e++Yp++++i+++el++++v
     CCD25717.1 125 GLRNALGEAFGTKKAKKAIADMERNRIDSDKLTESAIDIVDSVRTAAKDLPTREQLQSTVSNDRPTPMANLDATDVEQIYPVENIIPTKELQFIRV 220
                    9*********************************************************************************************** PP

                    XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXX.XXX....XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  RNA_pol_I_A49 193 kalekaadkeervellpykskssfvakrlekllqkseeaakkklrllyYlslLlkfysarrsvrkrgtekeklkeklesvpeiiidkllrkFtees 288
                    +++ ka+d   ++ellpy++ks++vak+l   +q ++     kl+llyYl+lL+++y++rr+ +     k kl+e+l+s+pei+id++l++Ft+++
     CCD25717.1 221 GNIFKAEDLDTKLELLPYETKSKYVAKKLGVFTQPNQ---LVKLQLLYYLNLLMGVYENRRVNS-----KVKLMERLNSPPEILIDGILNRFTVAR 308
                    **********************************777...*********************555.....679************************ PP

                    XXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXX CS
  RNA_pol_I_A49 289 snnkgkskr....lskshkdkLlayilalaLhldnfsvdltdLaedLklkpkklnelfkelGckiskltaaeaealglek....kekiavLklPLk 376
                     ++ gksk+    ++++h+dkL++yil+l++hldnf v++++La++L++kp+k+++lf++lG+ ++ +t+a+aea+g++k    ++kia+Lk+P+k
     CCD25717.1 309 PGQMGKSKErsffIDPQHEDKLVCYILTLVFHLDNFIVEISPLAQELSIKPSKIVSLFRTLGAIVKGATVAQAEAFGVPKsaanTYKIATLKVPFK 404
                    ********9*************************************************************************************** PP

                    XXXXXXXXX CS
  RNA_pol_I_A49 377 fpkvrrgrr 385
                    +p+++r++r
     CCD25717.1 405 LPEMTRRGR 413
                    *****9975 PP

>> Zwint  ZW10 interactor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.024   2.1e+02      95     124 ..     122     152 ..     104     161 .. 0.81
   2 ?    8.6   0.0   0.00013       1.2      14      41 ..     320     347 ..     315     368 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.024
       Zwint  95 eaqrkraqlqealeqlqakkqva.meklrva 124
                 +++  r  l ea+   +akk +a me+ r+ 
  CCD25717.1 122 DSRGLRNALGEAFGTKKAKKAIAdMERNRID 152
                 5566688999***********9879999986 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00013
       Zwint  14 fvmdsrkkdkllcsqlqvvdflqnflaq 41 
                 f +d ++ dkl+c  l +v  l nf+++
  CCD25717.1 320 FFIDPQHEDKLVCYILTLVFHLDNFIVE 347
                 999**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 3067.43
//
Query:       CCD25718.1  [L=1305]
Description: hypothetical protein NDAI_0F04000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-36  126.1   4.0    2.5e-36  126.1   4.0    9.0  3  AAA_23          AAA domain
    1.2e-18   67.4  12.7    1.3e-10   41.1   1.6    4.1  3  SMC_N           RecF/RecN/SMC N terminal domain
    3.4e-16   58.8   0.3    3.4e-16   58.8   0.3    7.1  8  Rad50_zn_hook   Rad50 zinc hook motif
    2.5e-10   40.6  14.1    2.5e-10   40.6  14.1    5.2  3  AAA_15          AAA ATPase domain
    1.2e-08   35.1   2.9    1.8e-05   24.7   1.8    5.3  5  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    9.9e-07   28.9   0.0    2.6e-06   27.6   0.0    1.7  1  SbcCD_C         Putative exonuclease SbcCD, C subunit
    0.00057   18.7 126.2      0.015   14.0   0.2    8.0  7  AAA_13          AAA domain
    0.00083   19.1   0.0      0.002   17.8   0.0    1.6  1  AAA_29          P-loop containing region of AAA domain
     0.0075   16.1  13.6     0.0075   16.1  13.6    5.3  4  ERM             Ezrin/radixin/moesin family
  ------ inclusion threshold ------
       0.03   14.7   0.0       0.03   14.7   0.0    4.0  5  AAA_16          AAA ATPase domain
      0.036   14.6   0.1      0.036   14.6   0.1    8.6  6  ABC_tran        ABC transporter
        0.4   11.0   0.0        0.4   11.0   0.0    5.2  4  AAA_22          AAA domain
        0.4   10.8   4.1        4.8    7.3   0.2    4.3  4  MqsA_antitoxin  Antitoxin component of bacterial toxin-antito
       0.83    9.2 120.6      0.078   12.6  10.6    7.8  7  Filament        Intermediate filament protein
        1.2    8.8   4.7        8.5    6.1   0.1    3.8  3  DUF2937         Protein of unknown function (DUF2937)


Domain annotation for each model (and alignments):
>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   4.0   2.1e-39   2.5e-36       1     197 [.       6     252 ..       6     253 .. 0.78
   2 ?   -3.3  23.3       9.3   1.1e+04      90     198 ..     212     333 ..     200     345 .. 0.61
   3 ?   -0.5   0.1       1.2   1.5e+03     108     152 ..    1232    1278 ..    1151    1299 .. 0.72

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 2.1e-39
      AAA_23   1 kLkienfrsf...rdqeidFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgrytrsiererel 96 
                 kL+i+++rsf   ++++i+F+k+ltlI+G+NG+GKTTi++++k+a++g+ p   ++s++g + +d++i+ e++v+a+v+l f++ +g+ t++++r+++l
  CCD25718.1   6 KLSIQGIRSFdsnDRETIEFGKPLTLIVGMNGSGKTTIIECLKYATTGDLP---PNSKGGVFVHDPKITGERDVRAQVKLAFTSANGI-TMIVTRNIQL 100
                 79********9977799*******************************755...566689***************************9.6999999999 PP

      AAA_23  97 skkkgkttkkaklellei..............deleqfisellgskkiilnlilflgqer...............feefelkdkkerleelekeleele 166
                   kk+ +t k+ + +l                 el+ +++ +lg+ k+il++++f++qe+               +e f+ ++  +++++l++ ++e  
  CCD25718.1 101 LAKKTTNTFKTLEGQLAAinqngdrstlstrsVELDTQVPLYLGVPKAILEYVIFCHQEDslwplsepsnlkknlNEIFQAMKFTKAIDNLKNIKKEMA 199
                 99999999888555555556666666666677889999999************9999999988877666555555444444555557777777777777 PP

      AAA_23 167 dekkllekl......................eqekekekeleeleeeleeilk 197
                  ++kll++                        q  e++ + +++e+el++i++
  CCD25718.1 200 IDIKLLKQSvehlkvdrdrskstkmtivqlqGQVDEYQGKVTDIEKELKKITE 252
                 77777777777777766666666666555432444455577777777777766 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 9.3
      AAA_23  90 iererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqer........feefelkdkkerleelekeleeledekkllekl..... 175
                 ++ +r +sk+ + t+ + +++  e + +   i+++l++  ++++ ++   qe         + ++++ +  e++++l++++e l+  k+ l++l     
  CCD25718.1 212 LKVDRDRSKSTKMTIVQLQGQVDEYQGKVTDIEKELKKITEQSDKLFKSNQEFqkvlskvqNLKLLETHYREEIDNLSTSIELLSSSKQSLQELlsnfs 310
                 455555555555555555555555555555555555555555544444444433333332233344466666*****************9999999999 PP

      AAA_23 176 eqekekekeleeleeeleeilke 198
                   ++eke+e  + e+++++++++
  CCD25718.1 311 TSLQEKENEVLQTENKITTLKNK 333
                 55666666666666666666554 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 1.2
      AAA_23  108 klelleideleqfisellg..skkiilnlilflgqerfeefelkdkk 152 
                  +l++ +i+ l + +++++g  + +++++li++ ++e+f +  +++++
  CCD25718.1 1232 NLDEENIESLAKALNNIIGlrRHQKNFQLIVITHDEKFLNHMNASQF 1278
                  44445567777888888773344558899998888886444444333 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.1   1.8e-10   2.2e-07       2     102 ..       4     103 ..       3     127 .. 0.77
   2 ?   -0.2   1.1      0.48   5.8e+02      63     121 ..     325     386 ..     292     407 .. 0.71
   3 !   41.1   1.6   1.1e-13   1.3e-10      73     207 ..     977    1275 ..     962    1293 .. 0.92

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 1.8e-10
                 EEEEEEESETTEE.CEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTT.CHCCCCCC--.BTTCSSTTEEEEEEEEEETTEESSSSSSCE CS
                 xxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   2 lkrleienFksya.gktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklr.seklsdlihk.skekasvkkaeveitfdnedkklkiekeev 97 
                 + +l i++ +s+  +++ +++f k +t ivG NGSGK+ +++ +++         l  ++k    +h  + ++++  +a+v++ f+  +  + i + ++
  CCD25718.1   4 IYKLSIQGIRSFDsNDRETIEFGKPLTLIVGMNGSGKTTIIECLKYATTG----DLPpNSKGGVFVHDpKITGERDVRAQVKLAFTSANGITMIVTRNI 98 
                 7899********7357899*************************998763....344044555556667778888888888888888888766666655 PP

                 EEEEE CS
                 xxxxx RF
       SMC_N  98 sisrr 102
                 ++  +
  CCD25718.1  99 QLLAK 103
                 55444 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.48
                 CCC--BTTCSSTTEEEEEEEEEETTEE...SSSSSSCEEEEEEEETTSEEEEEETTEEE-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  63 dlihkskekasvkkaeveitfdnedkk...lkiekeevsisrrvkrkgeseykingkevtkk 121
                 + i+  k+ka+v++ e++ +++ +++     +  ++++++ +++ ++ +s+ykin ++  + 
  CCD25718.1 325 NKITTLKNKANVQQSELTKLIRRQGELqagKESYEKNTNTLQTMAKEFSSRYKINFSDTDSM 386
                 33444678888888888888866666544344445567788888888889999997776665 PP

  == domain 3  score: 41.1 bits;  conditional E-value: 1.1e-13
                  STTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT.................................. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................. RF
       SMC_N   73 svkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevsellesagiske.................................. 135 
                   vk a+v+  ++  +k+++++++e+++ r++ ++ ++e k  +++ +  e++e l++++++ +                                  
  CCD25718.1  977 TVKLAKVQEDLEVAGKNIEETQDELNLHREKLKDSNNEKKNLEQNLRLIELQERLKETEVEVSglniqnaeaerdkyqqessrlrnlferlsaenag 1073
                  467788888888888889999***************9*9999******************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD25718.1 1074 kmgevkqlqsqieglkhqlrsdykdiddkyhknwvelqtrtfvtddietyskaldsaimryhglkmqdinriidelwkrtytgtdidtikirsdevt 1170
                  ************************************************************************************************* PP

                  .........................CS-HHHHHHHHHHHHHHHHCC.S--S.EEEECTTTTTS-HHHHHHHHHHHH......HHCTTSEEEEE-SSH CS
                  .........................xxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxx RF
       SMC_N  136 .........................lLSgGektLvalaLlfAiqkv.kpap.lyllDeidaaLDeknvkkvaellk......eksknaQfivislre 199 
                                             S G+k L+++ +++A+ +    ++ +  lDe   +LDe+n++ +a+ l+      +++kn+Q+ivi+++e
  CCD25718.1 1171 sgvrgksynyrvvmykqdaeldmrgRCSAGQKVLASIIIRLALSETfGTNCgVIALDEPTTNLDEENIESLAKALNniiglrRHQKNFQLIVITHDE 1267
                  ******************************************8775244443889*****************9875444444899************ PP

                  HHCCC-SC CS
                  xxxxxxxx RF
       SMC_N  200 emlekadk 207 
                  ++l+++++
  CCD25718.1 1268 KFLNHMNA 1275
                  ***99954 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.2       9.2   1.1e+04       8      19 ..     184     195 ..     183     196 .. 0.84
   2 ?   -0.9   0.1       1.3   1.5e+03      34      51 ..     486     503 ..     483     504 .. 0.83
   3 ?   -3.6   0.5         9   1.1e+04       3      17 ..     509     523 ..     508     524 .. 0.74
   4 ?    0.1   0.2       0.6   7.2e+02       1      23 [.     615     635 ..     615     636 .. 0.80
   5 !   58.8   0.3   2.9e-19   3.4e-16       1      51 [.     659     710 ..     659     711 .. 0.98
   6 ?   -2.2   0.1       3.2   3.8e+03       1      19 [.     760     778 ..     760     779 .. 0.87
   7 ?   -1.6   0.6       2.1   2.6e+03      32      50 ..     834     852 ..     830     853 .. 0.84
   8 ?   -2.5   0.0       3.9   4.7e+03      28      43 ..    1232    1247 ..    1231    1249 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 9.2
                    HHHHHHHHTT-S CS
  Rad50_zn_hook   8 lnkkieelkeak 19 
                    ++k+i++lk+ k
     CCD25718.1 184 FTKAIDNLKNIK 195
                    889*****9876 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.3
                    HHHHHHHHHHHHHHHH.. CS
  Rad50_zn_hook  34 rseLikelqsklerlpee 51 
                    + ++i el+skl++++++
     CCD25718.1 486 KTDVITELNSKLKQKNDQ 503
                    5678999*****999876 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 9
                    HHHHHHHHHHHHHTT CS
  Rad50_zn_hook   3 qeteelnkkieelke 17 
                    +e e++++ki ++++
     CCD25718.1 509 NELEQIQEKIMKTNQ 523
                    577888888888776 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.6
                    HHHHHHHHHHHHHHHTT-SEE-T CS
  Rad50_zn_hook   1 lhqeteelnkkieelkeakgcCP 23 
                    l++++ee++k++ee   +  +CP
     CCD25718.1 615 LKSTEEEITKRLEESLPE--DCP 635
                    689**********98733..476 PP

  == domain 5  score: 58.8 bits;  conditional E-value: 2.9e-19
                    HHHHHHHHHHHHHHHTT-SEE-TTT--EE-HHH.HHHHHHHHHHHHHHHH.. CS
  Rad50_zn_hook   1 lhqeteelnkkieelkeakgcCPlCgReldeeh.rseLikelqsklerlpee 51 
                    +hq+t+++n+k++e++++++cC+lC R++++++ r +++++l++k++ ++e+
     CCD25718.1 659 MHQTTLDFNRKALEIADRDNCCYLCARKFETDDfRGKILQQLRAKTDANFEN 710
                    9*************************************************96 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 3.2
                    HHHHHHHHHHHHHHHTT-S CS
  Rad50_zn_hook   1 lhqeteelnkkieelkeak 19 
                    l+++++e++ k e+lk+ +
     CCD25718.1 760 LKNKFDEFELKGENLKSDR 778
                    68899**********9976 PP

  == domain 7  score: -1.6 bits;  conditional E-value: 2.1
                    HHHHHHHHHHHHHHHHHH. CS
  Rad50_zn_hook  32 ehrseLikelqsklerlpe 50 
                     +++ L+++l++  ++l+ 
     CCD25718.1 834 QEKNALLRQLRKDVQDLQN 852
                    4699********9999876 PP

  == domain 8  score: -2.5 bits;  conditional E-value: 3.9
                     EE-HHHHHHHHHHHHH CS
  Rad50_zn_hook   28 eldeehrseLikelqs 43  
                     +ldee+ ++L+k l++
     CCD25718.1 1232 NLDEENIESLAKALNN 1247
                     6999999999998876 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6  14.1   2.1e-13   2.5e-10       6     284 ..       7     343 ..       3     366 .. 0.55
   2 ?   -0.8  10.9      0.81   9.7e+02     104     185 ..     562     645 ..     552     678 .. 0.72
   3 !   14.0  20.0   2.6e-05     0.031      60     368 ..     894    1269 ..     882    1270 .. 0.65

  Alignments for each domain:
  == domain 1  score: 40.6 bits;  conditional E-value: 2.1e-13
      AAA_15   6 ikikNFRslkd...veidlseeltvliGkNnsGKSsilealdlFlnnkekkn............................................... 54 
                 ++i+  Rs+++    +i++ + lt+++G N+sGK++i+e l++  + + + n                                               
  CCD25718.1   7 LSIQGIRSFDSndrETIEFGKPLTLIVGMNGSGKTTIIECLKYATTGDLPPNskggvfvhdpkitgerdvraqvklaftsangitmivtrniqllakkt 105
                 5555556665433479*************************9999999777788888888888888888888887777777777777777777777777 PP

      AAA_15  55 .kkvikiekedleifeniseskdikIdvef..................aekekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsde 134
                  + ++++e +   i++n ++s                              +   ey+ + +++++ ++  +     s lkk +++  ++ k ++ +d+
  CCD25718.1 106 tNTFKTLEGQLAAINQNGDRS--------TlstrsveldtqvplylgvP--KAILEYVIFCHQEDSLWPLSEP----SNLKKNLNEIFQAMKFTKAIDN 190
                 755555555555555554444........03333333355556666440..4556788888888888887444....4444444444444444456777 PP

      AAA_15 135 kisvekkkskkelp.kekeeklekekeelkid...kedlkklikkleeslkkee...............elknvlksaiiklllisakRnvsd..edse 212
                  ++++k++++ +   k + e+l       k+d   ++++k +i +l+ ++ +++               + ++++ks+++  ++ s+++n +   + + 
  CCD25718.1 191 LKNIKKEMAIDIKLlKQSVEHL-------KVDrdrSKSTKMTIVQLQGQVDEYQgkvtdiekelkkiteQSDKLFKSNQEFQKVLSKVQNLKLleTHYR 282
                 7777777775433302222222.......2222245566666666777777777777744444444444444444444444444444444443333344 PP

      AAA_15 213 kkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelkkilkkkidkikkfnykgkkneei 284
                 ++ ++l++ +e ++++      +++l+e l+++ ++l+e+++++ +      ++ki ++k+  + ++++ ++
  CCD25718.1 283 EEIDNLSTSIELLSSS------KQSLQELLSNFSTSLQEKENEVLQT-----ENKITTLKNKANVQQSELTK 343
                 4444444444444444......5566666666666666666666222.....23333333322233333222 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.81
      AAA_15 104 adlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikkleeslkkee..........e 185
                       +++ d+kk++ + + ++          +++++ s+++ ++e++  l + + elk+ k++ +++ k+leesl+++           e
  CCD25718.1 562 GLSANSDIDIDFKKYFINMQKQIA--------LNNKDIHSSNKEYTESSIRLSNTQRELKKLKSTEEEITKRLEESLPEDCpideyndvvvE 645
                 555555666677777777666664........666777789999*********************************988766666666552 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 2.6e-05
      AAA_15   60 iekedleifeniseskdikIdvefaekekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkks............. 143 
                   +++++++   +  + + +I+v     +++++  k+l++++ ++++     ++++    i + k +l+  ++ ++ ++ +  +              
  CCD25718.1  894 AKEHEVDTLGVRIQNLEEEINVLL---GEKEIAAKLLNETRLEYNE-----EIESQRGNIDNIKRYLDRFNDLKSDVDTFSTQGfaeledctvklak 982 
                  555666666666777777777777...3444444444444333332.....2222222222222222333333333333333332223333333332 PP

      AAA_15  144 kkelpkekeeklekekeelkidkedlkklikkleeslkkee.........elk.nvlksaiiklllisakRnvsdedsekkssllgklkekileeal 230 
                   +e+ +   ++ e+ ++el +  e+lk+  +       +++         el+  + + + + + l+    +++ ++++++ss l +l+e+++ e++
  CCD25718.1  983 VQEDLEVAGKNIEETQDELNLHREKLKDSNN-------EKKnleqnlrliELQeRLKETEVEVSGLNIQNAEAERDKYQQESSRLRNLFERLSAENA 1072
                  3333333333333334444444444444444.......22222223355533303445566666677777777777777777777777777777744 PP

      AAA_15  231 qekl......eeelteklkeiqeklkeidkklaeelk...............................kilkkkidkikkfnykgkkneeieik... 287 
                   + +        +++    ++ +++k+id+k+ +++                                ++++ +id++ k  y g +  +i+i+   
  CCD25718.1 1073 GK-MgevkqlQSQIEGLKHQLRSDYKDIDDKYHKNWVelqtrtfvtddietyskaldsaimryhglkmQDINRIIDELWKRTYTGTDIDTIKIRsde 1168
                  33.36877766666666677777777777777776669999999**999999999999999999999999999999999999999999999999*** PP

      AAA_15  288 ................ddeelplnknG...sGvqrllllillileaekkdekeeknvilliEEPEahLHpqaqkvlikllkelandnkt....Qvii 361 
                                   +++ +l+++G    G++ l ++i+ ++  e      ++  +++++EP ++L  ++ ++l+k+l +++   ++    Q+i+
  CCD25718.1 1169 vtsgvrgksynyrvvmYKQDAELDMRGrcsAGQKVLASIIIRLALSETF---GTNCGVIALDEPTTNLDEENIESLAKALNNIIGLRRHqknfQLIV 1262
                  ****************555555555542227******************...999*****************************99888899***** PP

      AAA_15  362 tTHSphi 368 
                   TH + +
  CCD25718.1 1263 ITHDEKF 1269
                  ***9865 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   8.7e-07     0.001       1      48 [.      29      73 ..      29      82 .. 0.80
   2 ?   -1.0   0.0         1   1.2e+03      19     106 ..     188     287 ..     184     291 .. 0.81
   3 ?   -1.8   3.9       1.8   2.1e+03      77     208 ..     361     493 ..     333     516 .. 0.64
   4 ?   -0.0   1.1      0.52   6.2e+02      62     152 ..     590     670 ..     552     821 .. 0.79
   5 !   24.7   1.8   1.5e-08   1.8e-05      36     302 ..     939    1270 ..     921    1271 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 8.7e-07
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipsl 48
                l++++G NgsGK++++++l+++    +   + +++ + +++ +ki+++
  CCD25718.1 29 LTLIVGMNGSGKTTIIECLKYA---TTGDLPPNSKGGVFVHDPKITGE 73
                69******************99...66777777777776666666655 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1
      AAA_21  19 ldllarl...........drdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv.eeklssvetllesgllldkrsl 105
                 +d l+ +            ++ve+l+ ++++++++++ +  l +  +e+ ++ +++e++++++  +    ++ +q  +  ls v +l++  +  +++++
  CCD25718.1 188 IDNLKNIkkemaidikllKQSVEHLKVDRDRSKSTKMTIVQLQGQVDEYQGKVTDIEKELKKITEQSDKLFKSNQEfQKVLSKVQNLKLLETHYREEID 286
                 555555555555555666889999999999999999999999999999999999999999999999999999999988888888888888888777777 PP

      AAA_21 106 e 106
                 +
  CCD25718.1 287 N 287
                 6 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.8
      AAA_21  77 rlersqv.eeklssvetllesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrkerigllnifad 174
                 + +  q  +  +ss+ +   s + + ++  +   +f +  + +   + ++  k++ ++e  +++  k  t  + r+++++++l++l  e   l + f++
  CCD25718.1 361 NTNTLQTmAKEFSSRYKINFSDTDSMDSFIKLSSDFVSSLSVSLLSYESEATKAIRKAETRSNEATKSETIQRQRLEYSRKDLEKLNTEIEKLTSEFKN 459
                 444444443333444444444445555555566666666666777777777777777777777777777777777777777777777777777777777 PP

      AAA_21 175 yfgfakekrllqrlvrslklveielsdlgegeel 208
                 + + ++ +++ ++ +  +++    ++++++  el
  CCD25718.1 460 NEYTKEDLEMERKKLEDYHEKVRDWEKTDVITEL 493
                 7777777777777777777777777766555544 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.52
      AAA_21  62 ieeflsqgvryryglrlersqveeklssvetllesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsraw 152
                 ++ + s++   + ++rl + q           l++     ++++++  ++ pe   i++  +v +++els++ + ++ +++++t++++r++
  CCD25718.1 590 DI-HSSNKEYTESSIRLSNTQR---------ELKKLKSTEEEITKRLEESLPEDCPIDEYNDVVVEAELSYKTALENLKMHQTTLDFNRKA 670
                 33.3333333344455555555.........888888888899999999999999999999999999999999999999999999999876 PP

  == domain 5  score: 24.7 bits;  conditional E-value: 1.5e-08
      AAA_21   36 lsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv..eeklssvetllesgllldkrsleeedvfnpeargirggvsvfslkel 130 
                  +s +g+i+ i ++ld+ ++ ++++ +++ ++      +  ++l + q   e   ++ e+++    l++++ +++ +++ + +++ r ++  ++lke 
  CCD25718.1  939 ESQRGNIDNIKRYLDRFNDLKSDVDTFS-TQGFAELEDCTVKLAKVQEdlEVAGKNIEETQDELNLHREKLKDSNNEKKNLEQNLRLIELQERLKET 1034
                  5566666666666666666666666666.66666666666666666667677777777777888888888888888888888888888888888888 PP

      AAA_21  131 svsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslklveielsdlgegeeliasvderlrer........ 219 
                  +v+ +  +++++ + +++ + +s++l        r ++ +++a+++g++ e ++lq  + +lk +   +++    ++++ +       +        
  CCD25718.1 1035 EVEVSGLNIQNAEAERDKYQQESSRL--------RNLFERLSAENAGKMGEVKQLQSQIEGLKHQLRSDYKDI--DDKYHK-------Nwvelqtrt 1114
                  88888888888888888888888777........445555555555444444444444444444443332221..111111.......123333334 PP

      AAA_21  220 ................................................................gvvflengdgqelparel.SdGtkrllalltal 251 
                                                                                  +++ + ++++ el++r   S G+k l+ ++  l
  CCD25718.1 1115 fvtddietyskaldsaimryhglkmqdinriidelwkrtytgtdidtikirsdevtsgvrgksyNYRVVMYKQDAELDMRGRcSAGQKVLASIIIRL 1211
                  555555555888888888888888888888888888888888888888888888899999999********************************** PP

      AAA_21  252 lralkkg...sllliDEpEngLHPkllrrllell......kelsrngaQviltTHSplll 302 
                  +     g   +++++DEp ++L+ + +++l++ l      ++++ ++ Q+i+ TH+  +l
  CCD25718.1 1212 ALSETFGtncGVIALDEPTTNLDEENIESLAKALnniiglRRHQ-KNFQLIVITHDEKFL 1270
                  **99999************************9996666655555.5*********97665 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   2.2e-09   2.6e-06      20      89 ..    1187    1246 ..    1173    1247 .. 0.84

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 2.2e-09
     SbcCD_C   20 dgkekelsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89  
                  +++e    +++g+ S G+k +la++++ +al+  ++       ++++++LDE   +lDee+i++l ++l+
  CCD25718.1 1187 QDAE---LDMRGRCSAGQK-VLASIIIRLALSETFGT------NCGVIALDEPTTNLDEENIESLAKALN 1246
                  3333...6899********.*****************......59********************99986 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   2.9e-05     0.035       2      53 ..      12      64 ..      11     131 .. 0.83
   2 !    5.8  25.4    0.0037       4.4     299     481 ..     168     355 ..     158     374 .. 0.82
   3 ?   -3.7  46.8       2.9   3.4e+03      93     478 ..     410     824 ..     408     842 .. 0.66
   4 ?   -2.5  33.0       1.2   1.5e+03     159     473 ..     583     889 ..     564     914 .. 0.60
   5 ?   -5.1  22.8       7.3   8.7e+03     290     454 ..     849    1023 ..     830    1029 .. 0.52
   6 ?    3.2  11.7     0.023        28     355     460 ..     978    1099 ..     975    1105 .. 0.87
   7 !   14.0   0.2   1.2e-05     0.015     526     607 ..    1220    1298 ..    1180    1304 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.9e-05
      AAA_13  2 vrifdfrgaeledfkr.iNliYGwNGaGKTtLSrllrslelgetepkfangsi 53
                +r+fd+++ e+ +f++   li G NG+GKTt+ + l+  ++g   p+ + g +
  CCD25718.1 12 IRSFDSNDRETIEFGKpLTLIVGMNGSGKTTIIECLKYATTGDLPPNSKGGVF 64
                6789999999999977579*******************999998888776666 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0037
      AAA_13 299 kselleklkavsdeasensafeedkeelkaeaealeeqLkglqralea....KrkepfksvelesvkakiesikklvaeineliakhNekvanleeeke 393
                  s+l+++l++++++     +f +++++lk+ +++++  +k l++ +e     +    ++++++ ++++++++ + +v++i++  +k  e++++l ++ +
  CCD25718.1 168 PSNLKKNLNEIFQAM----KFTKAIDNLKNIKKEMAIDIKLLKQSVEHlkvdRDRSKSTKMTIVQLQGQVDEYQGKVTDIEKELKKITEQSDKLFKSNQ 262
                 567777777777755....46778888888888888888888888875311144556779999*******************************99999 PP

      AAA_13 394 eakkklelhlv.....eeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlrdekpaaeeinkeLkafGlgeleLkfee 481
                 e +k l +         ++++e+d++ + ++ l+ + ++l++ l++ ++ l+++e+e+ + e+++++ k+ a++  +eL++  +++ eL++ +
  CCD25718.1 263 EFQKVLSKVQNlklleTHYREEIDNLSTSIELLSSSKQSLQELLSNFSTSLQEKENEVLQTENKITTLKNKANVQQSELTKLIRRQGELQAGK 355
                 99998877554556668899******************************************************9999999866666776654 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 2.9
      AAA_13  93 ekqekieklkkeikkleekleaaeaqlqkaekekkklekeledeawkkivkkknsalsealkglkyeekfkerllkelkkknrkaaellsdeelkakle 191
                 e+ + i k+++  ++++++ + + + l+ ++k+++kl++e+e+  ++    k+n+  +e+l+  +++ +   + +++++k++    el s+ ++k++  
  CCD25718.1 410 EATKAIRKAETRSNEATKSETIQRQRLEYSRKDLEKLNTEIEKLTSE-F--KNNEYTKEDLEMERKKLEDYHEKVRDWEKTD-VITELNSKLKQKNDQM 504
                 77778888888888887766666666666666666666655555544.2..3455555777777778888888999999984.3444444444555566 PP

      AAA_13 192 tvesenlpelapl.slssidldalekaeilkkkvvgkdseieeLie....nldladWVkqGlelheassdtCpFCgqplpaerkaaLea....hFddef 281
                 ++++++l++++     ++++ d + k  i+kk++  k ++++eLie    +++ ++W   Gl+  ++   +  F +  ++ + + aL++      ++e+
  CCD25718.1 505 IISENELEQIQEKiMKTNQQADLFAKLGIMKKSLYEKTEALNELIEkfndDPKSKEW---GLSANSDI--DIDFKKYFINMQKQIALNNkdihSSNKEY 598
                 668888888776625566667777889999999999877777777522116777888...66665554..33444444444444444331111568899 PP

      AAA_13 282 eekqerLekliekveskkselleklkavsde...........asensafeedkeelkaeaealeeqLkglqrale.aKrke....pfksvelesvkaki 364
                 +e+  rL++++ ++++ ks   e++++  +e           ++   ++e  ++++ ++++ ++++L+++++ale a r++     ++++e++++ +ki
  CCD25718.1 599 TESSIRLSNTQRELKKLKS-TEEEITKRLEEslpedcpideyNDVVVEAELSYKTALENLKMHQTTLDFNRKALEiADRDNccylCARKFETDDFRGKI 696
                 9999999888888765554.334444444443444566554455556677779999******************95444543333478*********** PP

      AAA_13 365 e.............sikklvaeineliakhNekvanleeekeeakkklelhlv................eeleseldeykkkykklekaieklekelke 434
                                +k+ v+e               e+e  +   +le++++                 e+e++++++k+k++++e + e+l+ + + 
  CCD25718.1 697 LqqlraktdanfenTLKETVKE---------------EKEYLDGLRALERDFLslttckddyksltsrvDEYEKDVSRLKNKFDEFELKGENLKSDRDY 780
                 6334444444333322222222...............2222222334444444444445555444445599999999********************** PP

      AAA_13 435 eeaelkkleeeikeLekqlrdekpaaeeinkeLkafGlgeleLk 478
                 +e+ l+++ eei  L+k++++ ++ ++++++eL+ +G +    +
  CCD25718.1 781 AERILRAICEEIVYLRKEVKSLEKNVQDVAEELRIYGDSDGGVQ 824
                 ************************************97765555 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.2
      AAA_13 159 eekfkerllkelkkknrkaaellsdeelk.akletvesenlpelaplslssidldalekaeilkkkvvgkdseieeLienldladWVkqGlelheassd 256
                 +    ++++   +k+ ++ + +ls+ +++ +kl+++e+e  ++l+  sl+++ + + ++++++++++  k  ++e+L  ++   d+ ++ le+ + + +
  CCD25718.1 583 QIALNNKDIHSSNKEYTESSIRLSNTQRElKKLKSTEEEITKRLEE-SLPEDCPIDEYNDVVVEAELSYK-TALENLKMHQTTLDFNRKALEIADRD-N 678
                 4445556666555554444444444444415577777777777777.77777777777889999999886.99999999999999999999999999.8 PP

      AAA_13 257 tCpFCgqpl.paerkaaLeahFddefeekqerLekliekveskkselleklkavsdeasensafeedkeelkaeaealeeqLkglqraleaKrkepfks 354
                  C  C +++ +++++ ++ +    + ++   + e+++++  ++++e+l+ l a+  +       ++d++ l+++ ++ e+       +l++K +e    
  CCD25718.1 679 CCYLCARKFeTDDFRGKILQQLRAKTDA---NFENTLKETVKEEKEYLDGLRALERDFLSLTTCKDDYKSLTSRVDEYEKDVS----RLKNKFDEFE-- 768
                 9999999773355666655555554333...4444444444444567777766666544445555555555555555555432....3344443322.. PP

      AAA_13 355 velesvkakiesikklvaeineliakhNekvanleeekeeakkklelhlvee.leseldeykkkykklekaieklekelkeeeaelkkleeeikeLekq 452
                 ++ e++k++ + ++ ++ +i e i    + v++le+++++++++l+ +  ++   + ++e+ ++ ++ ++ + +l k++++ ++e + +  e ++L + 
  CCD25718.1 769 LKGENLKSDRDYAERILRAICEEIVYLRKEVKSLEKNVQDVAEELRIYGDSDgGVQTVEELSHQQQEKNALLRQLRKDVQDLQNERESKTREHSALLTV 867
                 233555555566667777777777777777777777777777777776542212233334444444444555666666666666666666666666666 PP

      AAA_13 453 lrdekpaaeeinkeLkaf.Glg 473
                 +++ +  ++ei++ L++   ++
  CCD25718.1 868 IKERNLKVNEIERGLQRSeNIK 889
                 6666666666666666654444 PP

  == domain 5  score: -5.1 bits;  conditional E-value: 7.3
      AAA_13  290 kliekveskkselleklkavsde.................asensafeedkeelkaeaealeeqLkgl..qraleaKrkepfksvelesvkakiesi 367 
                  +l+++ esk++e ++ l+ + ++                 ++  +a e+++++l  ++++lee+++ l  ++++ aK     +  +  +++++ies 
  CCD25718.1  849 DLQNERESKTREHSALLTVIKERnlkvneierglqrseniKKDIIAKEHEVDTLGVRIQNLEEEINVLlgEKEIAAKLL--NE--TRLEYNEEIESQ 941 
                  3344444444444444433333311111111111101111222333333344444444444444444311223333331..11..223344455555 PP

      AAA_13  368 kklvaeineliakhNekvanleeekeeakkklelhlveeleseldeykkkykklekaieklekelkeeeaelkkleeeikeLekqlr 454 
                    ++++i++   ++N   +++++  ++   +l     e+++ +l + +++++ + k+ie++++el+ + ++lk  ++e k+Le++lr
  CCD25718.1  942 RGNIDNIKRYLDRFNDLKSDVDTFSTQGFAEL-----EDCTVKLAKVQEDLEVAGKNIEETQDELNLHREKLKDSNNEKKNLEQNLR 1023
                  55555555555555555555555555544444.....556666778889999999*****************************997 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.023
      AAA_13  355 velesvkakiesikklvaeineliakhNekvanleeekeeakkklelhlv................eeleseldeykkkykklekaieklekelkee 435 
                  v+l +v++++e + k+++e ++  + h ek ++ ++ek++++++l+l ++                +++e+e d+y+++ ++l +  e l +e + +
  CCD25718.1  978 VKLAKVQEDLEVAGKNIEETQDELNLHREKLKDSNNEKKNLEQNLRLIELqerlketevevsglniQNAEAERDKYQQESSRLRNLFERLSAENAGK 1074
                  6788899999999999999999999999999999999999999999999888898889999999998899999999999999999999999999999 PP

      AAA_13  436 eaelkkleeeikeLekqlrdekpaa 460 
                    e+k+l+ +i+ L+ qlr+  + +
  CCD25718.1 1075 MGEVKQLQSQIEGLKHQLRSDYKDI 1099
                  9999999999999999999877666 PP

  == domain 7  score: 14.0 bits;  conditional E-value: 1.2e-05
      AAA_13  526 kdkivviDDPvSSLDsnslfivfsliksrl.l.kkkkakQlfiLTHnleffkevkkntkrkrkkkeesfyllkk.sqksskikel 607 
                  + +++ +D P   LD + + + +  +++ + l +++k  Ql++ TH  +f++ ++        + +++f+++k+ ++++s+i+ +
  CCD25718.1 1220 NCGVIALDEPTTNLDEENIESLAKALNNIIgLrRHQKNFQLIVITHDEKFLNHMNAS------QFTDHFFRIKRdDRQKSQIEWV 1298
                  679***************************955888888************987654......7899******956668988655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.7e-06     0.002      14      45 ..      20      50 ..      13      57 .. 0.78

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.7e-06
      AAA_29 14 ghtieidlkg.atlltGpsGsGKSTllDAiqal 45
                ++tie+      tl++G +GsGK+T++  +++ 
  CCD25718.1 20 RETIEFG--KpLTLIVGMNGSGKTTIIECLKYA 50
                4667776..348***************887765 PP

>> ERM  Ezrin/radixin/moesin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   3.6      0.19   2.2e+02      37     123 ..     190     272 ..     180     298 .. 0.50
   2 ?    1.1  27.2      0.24   2.9e+02      13     201 ..     232     446 ..     224     449 .. 0.51
   3 ?    1.9  16.3      0.14   1.6e+02      14     177 ..     736     942 ..     727     965 .. 0.57
   4 !   16.1  13.6   6.3e-06    0.0075      11     125 ..     977    1098 ..     971    1149 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.19
         ERM  37 lLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerLkeeleeareaeeeak 123
                  L++ ++++  + +lL+q  ++++   +r k +++       +l+ +++e++ +++++e+e ++  e+ ++L +  +e ++ + + +
  CCD25718.1 190 NLKNIKKEMAIDIKLLKQSVEHLKVDRDRSKSTKMTI----VQLQGQVDEYQGKVTDIEKELKKITEQSDKLFKSNQEFQKVLSKVQ 272
                 5555555555555555555555555555555544443....3444455555555555555555555555554444444444443333 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.24
         ERM  13 rLkqlqeeaekaqeaLreseetaelLaekarraee...eaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarleeeserkeeeaerL 108
                 +  ++q ++   +++L++ +e++++L +++++ ++   + ++L+  +++ +eei++l  s e   ++k++l++ l +++  +++ e+e+ + e++ ++L
  CCD25718.1 232 QVDEYQGKVTDIEKELKKITEQSDKLFKSNQEFQKvlsKVQNLKLLETHYREEIDNLSTSIELLSSSKQSLQELLSNFSTSLQEKENEVLQTENKITTL 330
                 556666666666666666666666666666666652213345555556666666666666666666666666666666666666666666666666666 PP

         ERM 109 keeleeareaeeeakekllealstpsks.........eseenveeseteeeeensee.........................esaeletdeveklslei 173
                 k+++   + ++++  ++  e+ + +++           ++e ++                                      + + l+ ++ +    ++
  CCD25718.1 331 KNKANVQQSELTKLIRRQGELQAGKESYekntntlqtMAKEFSS------------RykinfsdtdsmdsfiklssdfvsslSVSLLSYESEATKAIRK 417
                 66665555555333333333333221111111111110111111............1222233333333444444444444322333333333445789 PP

         ERM 174 eeeRvtylekskrlqeq.LkeLkseleql 201
                  e R ++++ks+ +q q L+  +++le+l
  CCD25718.1 418 AETRSNEATKSETIQRQrLEYSRKDLEKL 446
                 999************87577777888876 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.14
         ERM  14 LkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaeaeeeiqrlkesaekeeeekeklerklreaeleaarle.............eese 99 
                 L+ ++++ +       e e+ + +L++k  + e + e+L+ ++  ae+  +++ e+     +e ++le++++++ +e++                 +++
  CCD25718.1 736 LTTCKDDYKSLTSRVDEYEKDVSRLKNKFDEFELKGENLKSDRDYAERILRAICEEIVYLRKEVKSLEKNVQDVAEELRIYGdsdggvqtveelsHQQQ 834
                 556666667777777777777777777777777777777777777776666666666666666666666666666655444444444444444436777 PP

         ERM 100 rkeeeaerLkeeleeareaeeeakekllealstpskseseenveeseteeeeensee..................................esaeletd 164
                 +k++  ++L+++++  +++ e ++++  ++l+  +    e n + +e e   + se+                                   +a+l ++
  CCD25718.1 835 EKNALLRQLRKDVQDLQNERESKTREHSALLTVIK----ERNLKVNEIERGLQRSENikkdiiakehevdtlgvriqnleeeinvllgekeIAAKLLNE 929
                 77788888999888888888777776666666663....334444444444444444223344434444444555555544444444443322444444 PP

         ERM 165 eveklsleieeeR 177
                 +  + ++eie +R
  CCD25718.1 930 TRLEYNEEIESQR 942
                 4444445555555 PP

  == domain 4  score: 16.1 bits;  conditional E-value: 6.3e-06
         ERM   11 eerLkqlqeeaekaqeaLreseetaelLaekarraeeeaelLeqkaaea.......eeeiqrlkesaekeeeekeklerklreaeleaarleeeser 100 
                    +L ++qe+ e a ++ +e +++ +l  ek++ + +e+++Leq+ + +       e+e +    + ++ e+e++k +++  +   +++rl  e+  
  CCD25718.1  977 TVKLAKVQEDLEVAGKNIEETQDELNLHREKLKDSNNEKKNLEQNLRLIelqerlkETEVEVSGLNIQNAEAERDKYQQESSRLRNLFERLSAENAG 1073
                  56999**************************************98765533444444444444556678999************************* PP

         ERM  101 keeeaerLkeeleeareaeeeakek 125 
                  k  e+++L++++e  +++++   + 
  CCD25718.1 1074 KMGEVKQLQSQIEGLKHQLRSDYKD 1098
                  *************999998766554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   2.5e-05      0.03      24      55 ..      27      64 ..      17     151 .. 0.75
   2 ?   -2.6   0.1       5.1   6.1e+03      97     132 ..     280     315 ..     228     321 .. 0.53
   3 ?    0.2   0.2      0.74   8.9e+02      57     132 ..     761     852 ..     744     871 .. 0.60
   4 ?   -3.1   0.2       7.3   8.7e+03     106     126 ..    1032    1067 ..     991    1074 .. 0.48
   5 ?   -2.3   0.0       4.3   5.1e+03     107     137 ..    1229    1258 ..    1190    1266 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.5e-05
      AAA_16 24 pelvllsGesGvGKsslvrellralekd......ggif 55
                 +l+l++G+ G+GK++++++l+ a ++d      gg+f
  CCD25718.1 27 KPLTLIVGMNGSGKTTIIECLKYATTGDlppnskGGVF 64
                4899****************996666667777764444 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.1
      AAA_16  97 wrekleealaavpelagaeasrllellkrllallsr 132
                 + ++  ++l+ + el ++++++l ell+++   l++
  CCD25718.1 280 HYREEIDNLSTSIELLSSSKQSLQELLSNFSTSLQE 315
                 222222222233334444447777777777655555 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.74
      AAA_16  57 rgkcdql.......esaipysa.laqalareellrqlldeaesaeleawrekleeala..........avpelagaea..srllellkrllallsr 132
                 + k+d++       +s++ y+  +++a+  ee++   ++ ++    e   +   e+l+           v el+ ++   ++ll++l++ ++ l++
  CCD25718.1 761 KNKFDEFelkgenlKSDRDYAErILRAI-CEEIVYLRKEVKSL---EKNVQDVAEELRiygdsdggvqTVEELSHQQQekNALLRQLRKDVQDLQN 852
                 5555555444333355677777777777.44666666666333...33333333333344467776665555555555777777777777766655 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 7.3
      AAA_16  106 a...............avpelagaea.....srllellkrl 126 
                  +               a ++     +     srl++l+ rl
  CCD25718.1 1032 KetevevsglniqnaeAERD-----KyqqesSRLRNLFERL 1067
                  24444444444432211222.....1233446666666665 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 4.3
      AAA_16  107 avpelagaeasrllellkrllallsrderpl 137 
                  ++ +l+ +  ++l+ +l++++ l ++ ++ +
  CCD25718.1 1229 PTTNLDEENIESLAKALNNIIGLRRH-QKNF 1258
                  44556666669999999999977777.5543 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.1     3e-05     0.036      14      50 ..      30      71 ..      22     138 .. 0.66
   2 ?    2.5   3.3      0.16   1.9e+02      79     111 ..     230     290 ..     170     316 .. 0.66
   3 ?    1.0   3.6      0.46   5.5e+02      38     103 ..     427     491 ..     409     500 .. 0.58
   4 ?    0.6   0.5      0.64   7.6e+02      49      96 ..     506     556 ..     493     568 .. 0.77
   5 ?   -2.3   6.6         5     6e+03      79     123 ..     769     843 ..     573     850 .. 0.65
   6 ?    0.0   4.7      0.95   1.1e+03      79     136 ..    1125    1230 ..     884    1231 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3e-05
                EEEEESTTSSHHHHHHHHTTSS--.....SEEEEEETTCEGG CS
                xxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkp.....teGeilldgkdlk 50
                + ivG nG+GK+t++++l   ++       +G + + + +++
  CCD25718.1 30 TLIVGMNGSGKTTIIECLKYATTGdlppnSKGGVFVHDPKIT 71
                789*************99755544333455566655544444 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.16
                 H............................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-H CS
                 x............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  79 n............................esdeeiekalsklglkelkdtvvksspssLSg 111
                 +                            +s++e++k+lsk+++ +l +t+ +++  +LS 
  CCD25718.1 230 QgqvdeyqgkvtdiekelkkiteqsdklfKSNQEFQKVLSKVQNLKLLETHYREEIDNLST 290
                 0222222222233333455555557778888888888888888888888888888888874 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.46
                 SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..HHHTCHHHHHHHSTTGGTTCBGES CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  38 teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..esdeeiekalsklglkelkdtvvk 103
                 ++++i+ +  + ++++le+l+ ei+ l+ e + ++e+t +     +++++e++++k+++ e k++v++
  CCD25718.1 427 KSETIQRQRLEYSRKDLEKLNTEIEKLTSE-FKNNEYTKE-DleMERKKLEDYHEKVRDWE-KTDVIT 491
                 344444444444446666666666666666.444444333.25444455999999999998.444443 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.64
                 GGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx RF
    ABC_tran  49 lkeqeleslrkeigvlpqepqlfpeltvren...esdeeiekalsklglke 96 
                 ++e+ele+ +++i    q++ lf +l + ++   e++e ++++++k++++ 
  CCD25718.1 506 ISENELEQIQEKIMKTNQQADLFAKLGIMKKslyEKTEALNELIEKFNDDP 556
                 4458899999*********99999999777778877777888888888765 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 5
                 H...............................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHH CS
                 x...............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  79 n...............................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalaral 123
                                                   ++++++++++l++ ++ d  v +  ++LS+ q+++ al r l
  CCD25718.1 769 LkgenlksdrdyaerilraiceeivylrkevkSLEKNVQDVAEELRIYGDSDGGV-QTVEELSHQQQEKNALLRQL 843
                 0233344444445555555555566555554444555778888888888777776.55688888888888887766 PP

  == domain 6  score: 0.0 bits;  conditional E-value: 0.95
                  H...................................HHHTCHHHHHHHSTTGGTTCBGESTTS.......GGS-HHHHH......HHHHHHHHHHTS CS
                  x...................................xxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxx......xxxxxxxxxxxx RF
    ABC_tran   79 n...................................esdeeiekalsklglkelkdtvvkssp.......ssLSgGqkq......rvalarallkkp 127 
                  +                                   + + + +++ s ++ k  + +vv +++          S Gqk+      r+al +++ ++ 
  CCD25718.1 1125 KaldsaimryhglkmqdinriidelwkrtytgtdidTIKIRSDEVTSGVRGKSYNYRVVMYKQdaeldmrGRCSAGQKVlasiiiRLALSETFGTNC 1221
                  1555555555555555555555555555555555444444566666666666666666666556666666788999998777777788888888899 PP

                  SEEEEESTT CS
                  xxxxxxxxx RF
    ABC_tran  128 kllllDEpt 136 
                   ++ lDEpt
  CCD25718.1 1222 GVIALDEPT 1230
                  999999998 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00033       0.4       4      66 ..      26      86 ..      22     121 .. 0.79
   2 ?   -1.2   0.3       1.9   2.3e+03      45      71 ..     292     334 ..     261     354 .. 0.56
   3 ?    0.9   0.8      0.43   5.1e+02      37      71 ..     669     715 ..     648     857 .. 0.75
   4 ?    1.0   0.0       0.4   4.8e+02      93     129 ..    1222    1264 ..    1197    1270 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00033
      AAA_22  4 tagilvvtGesGtGKTtllrrlleqldeeakaee....erpevvfvtlpsstsskdllrellralgl 66
                ++ +++++G  G+GKTt ++ l++  +           ++++ vfv  p+ t+ +d++ ++  a+++
  CCD25718.1 26 GKPLTLIVGMNGSGKTTIIECLKYATT------GdlppNSKGGVFVHDPKITGERDVRAQVKLAFTS 86
                67789*****************99973......1234477888888888888888888888777765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.9
      AAA_22  45 vtlpsst..sskdllrellralglelka..............e 71 
                 ++l ss+  s+++ll+++   l+++ ++              +
  CCD25718.1 292 IELLSSSkqSLQELLSNFSTSLQEKENEvlqtenkittlknkA 334
                 3333333346666666666666666655655555555444443 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.43
      AAA_22  37 e....erpevvfvtlpsstsskdllrellralglelka........e 71 
                 +    ++++   + ++ + + +d++ ++l++l  +++a         
  CCD25718.1 669 KaleiADRDNCCYLCARKFETDDFRGKILQQLRAKTDAnfentlkeT 715
                 14445666666777777778888888888888888777544433330 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.4
      AAA_22   93 elliiDEaqh.lrseealeeLrsllnl......srkgvqliLvG 129 
                  +++ +DE    l  ee++e L + ln+      ++k++qli++ 
  CCD25718.1 1222 GVIALDEPTTnL-DEENIESLAKALNNiiglrrHQKNFQLIVIT 1264
                  788888887779.778888885555555888889******9985 PP

>> MqsA_antitoxin  Antitoxin component of bacterial toxin-antitoxin system, MqsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2       0.5   5.9e+02      51      91 ..     304     344 ..     295     362 .. 0.82
   2 ?   -1.5   0.0       2.1   2.5e+03      21      79 ..     357     417 ..     341     429 .. 0.76
   3 ?    7.3   0.2     0.004       4.8      42     107 ..     479     544 ..     468     550 .. 0.90
   4 ?   -3.7   0.0       9.9   1.2e+04      32      65 ..    1213    1246 ..    1206    1250 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.5
  MqsA_antitoxin  51 drlseellefrkkvnaelvdpafiarvrkkleldqreaaei 91 
                     + ls+  +++++k n +l+  ++i+ +++k +++q+e++++
      CCD25718.1 304 ELLSNFSTSLQEKENEVLQTENKITTLKNKANVQQSELTKL 344
                     55666677888888999999999*************99886 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.1
  MqsA_antitoxin  21 tykgektvikavtgdfCarCGegvldeeeedrlseellefrkkvnaelv..dpafiarvrk 79 
                     +y+ ++ +++++  +f +r   ++ d+++ d + +   +f  ++  +l   +++  + +rk
      CCD25718.1 357 SYEKNTNTLQTMAKEFSSRYKINFSDTDSMDSFIKLSSDFVSSLSVSLLsyESEATKAIRK 417
                     6888899999999999999999999999999999998888887766654334445555554 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.004
  MqsA_antitoxin  42 egvldeeeedrlseellefrkkvnaelvdpafiarvrkkleldqreaaeifGgGvnafsryekGkv 107
                     e v d e++d ++e   ++++k +  ++  ++++++++k+  + ++a+     G++  s yek ++
      CCD25718.1 479 EKVRDWEKTDVITELNSKLKQKNDQMIISENELEQIQEKIMKTNQQADLFAKLGIMKKSLYEKTEA 544
                     67888999********************************9888888877789*********9775 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 9.9
  MqsA_antitoxin   32 vtgdfCarCGegvldeeeedrlseellefrkkvn 65  
                      ++  f ++CG   lde  ++   e++ ++ k +n
      CCD25718.1 1213 LSETFGTNCGVIALDEPTTNLDEENIESLAKALN 1246
                      5667899999999988777766666666666655 PP

>> Filament  Intermediate filament protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2  22.6      0.18   2.2e+02     125     289 ..     183     345 ..     165     361 .. 0.79
   2 ?    0.5  32.3      0.31   3.7e+02      60     285 ..     282     511 ..     279     516 .. 0.82
   3 ?    7.0  10.5    0.0031       3.7     166     249 ..     540     629 ..     503     663 .. 0.73
   4 ?    8.5  12.0    0.0011       1.3     176     291 ..     751     867 ..     710     878 .. 0.90
   5 ?    9.4   2.7   0.00058      0.69     202     273 ..     883     954 ..     870     964 .. 0.87
   6 ?    0.6   6.4      0.29   3.4e+02      54     108 ..     971    1025 ..     959    1044 .. 0.62
   7 ?   12.6  10.6   6.5e-05     0.078       1     133 [.    1013    1149 ..    1013    1168 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.18
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX-HHHHHH CS
    Filament 125 kvesLkeelaflkkvheeEvkelqkqvseqvlvevdaarkldLtei.lkeiraqyeelaeknreeaeewyks..kleelqeaaeknsealrsakeeite 220
                 k  +  ++l+  kk     +k l+++v e+++v+ d ++++ +t + l+   ++y   + + ++e+++  ++  kl + +++ +k  +++++ k   t 
  CCD25718.1 183 KFTKAIDNLKNIKKEMAIDIKLLKQSV-EHLKVDRDRSKSTKMTIVqLQGQVDEYQGKVTDIEKELKKITEQsdKLFKSNQEFQKVLSKVQNLKLLETH 280
                 445556778888888888999999998.99999999999999986557888888888888888888886543238888889999999999999999999 PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 221 lrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelaeireemarqlreYqeLL 289
                 +r +i++l++ +e l ++k+sl++ l     ++++ l++ ++++ + e+++++++++ + q +e  +L+
  CCD25718.1 281 YREEIDNLSTSIELLSSSKQSLQELL----SNFSTSLQEKENEVLQTENKITTLKNKANVQQSELTKLI 345
                 99999999999999988888776555....566777778888889999999999999999999988886 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.31
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXX CS
    Filament  60 rkqldeltkerarlqleldnlreeledlrkkyekelnkreevEaelkalrkdldeatlarvdLekkvesLkeelaflkkvheeEvkelqkqvs...eqv 155
                 r+++d+l++  + l    ++l+e l ++ ++++++ n+  ++E+++ +l+    +a++++++L k +   + el+  k+ +e+  ++lq+ ++   ++ 
  CCD25718.1 282 REEIDNLSTSIELLSSSKQSLQELLSNFSTSLQEKENEVLQTENKITTLKN---KANVQQSELTKLIRR-QGELQAGKESYEKNTNTLQTMAKefsSRY 376
                 78888888888888899999999999999999999999999*****99995...566777888665554.88899999999998888887776665777 PP

                 XXXXXXXXXXX........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 156 lvevdaarkld........Lteilkeiraqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaql 246
                 +++  ++ ++d          + l+     ye+ a k  ++ae    ++ +e++++ + + + l+ +++++++l+ +i++l++e ++ + +k+ le + 
  CCD25718.1 377 KINFSDTDSMDsfiklssdFVSSLSVSLLSYESEATKAIRKAE----TRSNEATKSETIQRQRLEYSRKDLEKLNTEIEKLTSEFKNNEYTKEDLEMER 471
                 8888888888876665444566666666778887777777776....68999999999999************************************** PP

                 HHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 247 aeleerleaele.klqeklseleeelaeireemarqlreY 285
                 + le+ +e+ ++ +  + ++el+++l++  ++m    +e 
  CCD25718.1 472 KKLEDYHEKVRDwEKTDVITELNSKLKQKNDQMIISENEL 511
                 *****99998873456789*********999997776665 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0031
                 XXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 166 dLteilkeiraqyeelaek......nreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlael 249
                 + te+l+e+ +++++  ++       +++++  +k+ + ++q++++ n+++++s+++e te+  ++ + + el++lk++++ + ++l+e 
  CCD25718.1 540 EKTEALNELIEKFNDDPKSkewglsANSDIDIDFKKYFINMQKQIALNNKDIHSSNKEYTESSIRLSNTQRELKKLKSTEEEITKRLEES 629
                 466777777777665544311111146789999*****************************************************9996 PP

  == domain 4  score: 8.5 bits;  conditional E-value: 0.0011
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 176 aqyeelaeknreeaeewykskleelqeaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqla..eleerleaeleklqeklseleeela 272
                 ++ye+ +++ +++ +e ++ k e+l++  +  +  lr+  eei  lr++++sle +++++ ++ + + ++     + e+l+++ ++ ++ l++l ++++
  CCD25718.1 751 DEYEKDVSRLKNKFDE-FELKGENLKSDRDYAERILRAICEEIVYLRKEVKSLEKNVQDVAEELRIYGDSDGgvQTVEELSHQQQEKNALLRQLRKDVQ 848
                 5799999999988876.9*********************************************9998777541144467888899999*********** PP

                 HHHHHHHHHHHHHHHHHHH CS
    Filament 273 eireemarqlreYqeLLdv 291
                 ++++e + + re + LL v
  CCD25718.1 849 DLQNERESKTREHSALLTV 867
                 *****************87 PP

  == domain 5  score: 9.4 bits;  conditional E-value: 0.00058
                 XXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    Filament 202 eaaeknsealrsakeeitelrrqiqsleieleslkkqkasleaqlaeleerleaeleklqeklseleeelae 273
                 + +e+ ++++ + ++e+  l  +iq+le e++ l ++k+   + l+e+  ++++e+e+ + +++++ + l +
  CCD25718.1 883 QRSENIKKDIIAKEHEVDTLGVRIQNLEEEINVLLGEKEIAAKLLNETRLEYNEEIESQRGNIDNIKRYLDR 954
                 45566678899999*************************************************999887765 PP

  == domain 6  score: 0.6 bits;  conditional E-value: 0.29
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    Filament   54 keleelrkqldeltkerarlqleldnlreeledlrkkyekelnkreevEaelkal 108 
                  +ele+   +l +++++ + +  +++++++el+  r+k+++  n+++++E++l+ +
  CCD25718.1  971 AELEDCTVKLAKVQEDLEVAGKNIEETQDELNLHREKLKDSNNEKKNLEQNLRLI 1025
                  4566666666666666666666666666666666666666666666666666533 PP

  == domain 7  score: 12.6 bits;  conditional E-value: 6.5e-05
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.. CS
    Filament    1 nekeelqeLNdrlAsYidkVraLEqenkeLeakieeleekk.saevsklkelyekeleelrkqldeltkerarlqleldnlreeledlrkkyeke.. 94  
                  nek++l + N rl    ++ +  E e + L+++ +e e  k ++e+s+l++l+e+  +e   ++ e+++ +++++   ++lr +++d+  ky+k+  
  CCD25718.1 1013 NEKKNLEQ-NLRLIELQERLKETEVEVSGLNIQNAEAERDKyQQESSRLRNLFERLSAENAGKMGEVKQLQSQIEGLKHQLRSDYKDIDDKYHKNwv 1108
                  67888766.889999999999999999999999888776655999999*******999999999999999999999999999999999999998555 PP

                  .XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
    Filament   95 .lnkreevEaelkalrkdldeatlarvdLekk.vesLkeel 133 
                   l+ r+ v ++++++ k ld a ++   L ++ ++ + +el
  CCD25718.1 1109 eLQTRTFVTDDIETYSKALDSAIMRYHGLKMQdINRIIDEL 1149
                  59**********************99999887566666665 PP

>> DUF2937  Protein of unknown function (DUF2937)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.6      0.24   2.8e+02      55      98 ..     241     283 ..     221     323 .. 0.53
   2 ?    6.1   0.1    0.0071       8.5      56     116 ..     513     571 ..     500     587 .. 0.90
   3 ?   -1.0   0.0       1.1   1.3e+03      77     100 ..     946     969 ..     933     974 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.24
     DUF2937  55 gdlealiahyrqsedpvvradaesiqalverlerLeqelqalqq 98 
                  d+e+ +++ ++++d+ ++++ ++ q++++++++L+   + +++
  CCD25718.1 241 TDIEKELKKITEQSDKLFKSN-QEFQKVLSKVQNLKLLETHYRE 283
                 356666666666666666654.4556666666666544443333 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0071
     DUF2937  56 dlealiahyrqsedpvvradaesiqalverlerLeqelqalqqasllerlvvllraadaei 116
                  +++ i+++ q++d  +++ + ++++l+e+ e+L++  +++++ ++ ++ + l  ++d +i
  CCD25718.1 513 QIQEKIMKTNQQAD-LFAKLGIMKKSLYEKTEALNELIEKFND-DPKSKEWGLSANSDIDI 571
                 68999********9.99**************************.99999998888888776 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.1
     DUF2937  77 esiqalverlerLeqelqalqqas 100
                 ++i++ ++r+++L++++++++++ 
  CCD25718.1 946 DNIKRYLDRFNDLKSDVDTFSTQG 969
                 689999*************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3399  (0.189581); expected 358.6 (0.02)
Passed bias filter:                      629  (0.0350828); expected 358.6 (0.02)
Passed Vit filter:                       175  (0.00976072); expected 17.9 (0.001)
Passed Fwd filter:                       100  (0.00557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 2.91u 0.37s 00:00:03.28 Elapsed: 00:00:00.75
# Mc/sec: 5221.77
//
Query:       CCD25719.1  [L=624]
Description: hypothetical protein NDAI_0F04010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-05   24.0   0.3    0.00018   21.5   0.1    2.3  2  CTK3      CTD kinase subunit gamma CTK3
    4.7e-05   23.1   0.0    9.9e-05   22.1   0.0    1.5  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
     0.0015   18.6   0.1      0.027   14.6   0.0    2.5  2  RRM_7     RNA recognition motif
      0.008   17.0   0.0      0.025   15.4   0.0    1.9  1  CTD_bind  RNA polymerase II-binding domain.
  ------ inclusion threshold ------
      0.023   14.3   0.0      0.069   12.8   0.0    1.9  1  Spo7_2_N  Sporulation protein family 7
       0.17   11.7   3.3        6.4    6.6   0.2    3.3  3  SpoVIF    Stage VI sporulation protein F


Domain annotation for each model (and alignments):
>> CTK3  CTD kinase subunit gamma CTK3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   6.1e-08   0.00018      20     115 ..      26     133 ..       6     141 .. 0.73
   2 ?   -1.3   0.0       0.7   2.1e+03       9      27 ..     188     206 ..     184     212 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 6.1e-08
                 SGGGTHHHHHHHHHTGGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHTT--S..............THHHHHHHTHHHHHHHHS-HHHHHHH CS
        CTK3  20 svqslqkaaqfAlknkdkeedlfscileqlesadlNtranilyfidllleeslkegqseks............pYveslkrdilklvdsvvPgsgaaNl 106
                 s   ++k ++fAl+n + ee ++s+i++     +   +   ly+id + +  l++++ +k+              v +l ++i+ l+   + +s+a N 
  CCD25719.1  26 SGSRIKKLTNFALENVELEEKMVSSIINYSKTCQDSHKLGALYIIDSIAKVYLEQARAHKQyikstakpgtyaHAVYVLGEAIQDLLYDSISKSNAENT 124
                 3456799**********************999999***********99887777777766555557777733323445777888877666668888888 PP

                 HHHHHHHHH CS
        CTK3 107 ksvrkilks 115
                 ++vr +++ 
  CCD25719.1 125 EKVRMLIDI 133
                 888877665 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.7
                 HHHHHHTT--SSGGGTHHH CS
        CTK3   9 qFsqlLrkLtasvqslqka 27 
                 + +q+L++L+ s ++++k 
  CCD25719.1 188 RCTQILNNLNDSSNLSSKN 206
                 67899****9998888775 PP

>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.3e-08   9.9e-05       1      61 [.     377     432 ..     377     440 .. 0.93

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 3.3e-08
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTT CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealng 61 
                 lf+g++p  ++e eL+ ++++f +++s+ l ++     +++afV+  s+ +Ae+ l ++n+
  CCD25719.1 377 LFIGGVPMHMKEWELSNILKPFAEVQSVILNNQ-----RKHAFVKVYSRQEAENVLMNFNR 432
                 8************************99999996.....****************9998886 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.17     5e+02      38      74 ..      84     119 ..      68     130 .. 0.72
   2 !   14.6   0.0     9e-06     0.027       1      34 [.     374     407 ..     374     437 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.17
       RRM_7  38 skkkaaenskaakgyvflvfedeksvkaLleacteee 74 
                 +k++ + ++    +y++ v+   +++++Ll ++++++
  CCD25719.1  84 HKQYIK-STAKPGTYAHAVYVLGEAIQDLLYDSISKS 119
                 333333.4444568***************98877655 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 9e-06
       RRM_7   1 srkvFvGGlPiDiteeelkatfkefgkvlvdwPk 34 
                 sr +F+GG+P+ ++e el++ +k f++v+    +
  CCD25719.1 374 SRTLFIGGVPMHMKEWELSNILKPFAEVQSVILN 407
                 8999*********************998644433 PP

>> CTD_bind  RNA polymerase II-binding domain.
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.3e-06     0.025       1      59 [.      63     136 ..      63     140 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.3e-06
    CTD_bind   1 kLnllYLaNdvlq....ns.krkq..........kdefapaFapvlpeafadaykkapekikkklkrllniWee 59 
                 kL  lY+++++ +    ++ ++kq            + +  +++++++++ d ++k++ ++ +k++ l++iW+ 
  CCD25719.1  63 KLGALYIIDSIAKvyleQArAHKQyikstakpgtYAHAVYVLGEAIQDLLYDSISKSNAENTEKVRMLIDIWDR 136
                 8999*********99994434444676667655533334558888888898888899999************86 PP

>> Spo7_2_N  Sporulation protein family 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.3e-05     0.069      18      50 ..     366     398 ..     364     415 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 2.3e-05
    Spo7_2_N  18 speelsltsrvvlLGgIPelWlqeqrksiyksl 50 
                  p+++   sr++++Gg+P +  + + ++i+k +
  CCD25719.1 366 PPDHVKVFSRTLFIGGVPMHMKEWELSNILKPF 398
                 699***************988777777777665 PP

>> SpoVIF  Stage VI sporulation protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.19   5.7e+02      40      65 ..      33      56 ..      28      64 .. 0.63
   2 ?    3.0   0.0      0.03        88      18      38 ..     112     132 ..     102     133 .. 0.85
   3 ?    6.6   0.2    0.0022       6.4      25      62 ..     200     237 ..     185     246 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.19
      SpoVIF 40 vsklankpvskekedkivkaivndkv 65
                +++ a ++v  e e+k+v++i+n   
  CCD25719.1 33 LTNFALENV--ELEEKMVSSIINYSK 56
                444444444..789999999998655 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.03
      SpoVIF  18 LansvqkadlkdektlRqlik 38 
                 L +s++k++ ++ +++R li+
  CCD25719.1 112 LYDSISKSNAENTEKVRMLID 132
                 5689***************95 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0022
      SpoVIF  25 adlkdektlRqlikqvsklankpvskekedkivkaivn 62 
                 ++l++++  +  ++  ++l+n +v+++++d +v+  ++
  CCD25719.1 200 SNLSSKNHTHLNVSIPAELTNSSVPSKQQDALVQLLIT 237
                 57777777777777789****************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1173  (0.0654247); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4327.49
//
Query:       CCD25720.1  [L=275]
Description: hypothetical protein NDAI_0F04020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-30  105.2   0.0    5.7e-30  104.5   0.0    1.3  1  MRP-L46   39S mitochondrial ribosomal protein L46


Domain annotation for each model (and alignments):
>> MRP-L46  39S mitochondrial ribosomal protein L46
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.0   3.2e-34   5.7e-30       3     119 .]      14     148 ..      12     148 .. 0.92

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 3.2e-34
                 EEEE-B--B--SB-----HHHHHH....HHHHHHHHHHT----HHHHTTHHHHHHHHHHH---------.....----HHHHHHHHHHHHHHS...... CS
     MRP-L46   3 ikagliLsRpPvvtrelspfEkefYkYqkellerlelefskyfyfkkgtlaelkfkelkkklterdeevardigkpdlrqererndeqeikspksyeea 101
                 i++++iLsR+P+v rel+++E+++YkYq+el++rl+++f++y yfkkg+l+e+kf + ++ ++++ ++v+++ g pd++ +rer+ +qei  p+    +
  CCD25720.1  14 IRSAMILSRIPIVVRELTKLESNYYKYQSELEKRLMWTFPDYYYFKKGSLSEHKFIKAQNYPVSKIPGVWYPHGIPDIKRRRERRSKQEIVLPRD---K 109
                 899******************************************************************************************65...3 PP

                 .............................----S-SSTT CS
     MRP-L46 102 leeda.....................rvikpasRvTeaD 119
                  e d                      r+i+p+   TeaD
  CCD25720.1 110 IEDDVslvgssgstkgstdgakgsisRPIVPNDLKTEAD 148
                 3333344568899999999999****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 1867.19
//
Query:       CCD25721.1  [L=491]
Description: hypothetical protein NDAI_0F04030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-13   51.0   9.0    6.8e-05   23.6   0.5    6.7  7  WD40         WD domain, G-beta repeat
    6.2e-13   48.9   0.0       0.47   10.8   0.0    5.6  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    3.8e-05   22.5   0.1     0.0024   16.6   0.0    3.1  4  MMS1_N       Mono-functional DNA-alkylating methyl methanesul
  ------ inclusion threshold ------
      0.038   13.4   0.0       0.21   11.0   0.0    2.1  2  DUF5046      Domain of unknown function (DUF5046)
      0.053   12.8   3.1      0.067   12.5   0.3    2.4  3  WD40_like    WD40-like domain
       0.14   11.8   2.7         14    5.3   0.0    3.2  4  Hira         TUP1-like enhancer of split


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0013       3.8      12      38 .]      68      94 ..      54      94 .. 0.82
   2 ?    2.4   0.0      0.11   3.2e+02       8      37 ..     113     144 ..     104     145 .. 0.71
   3 !   10.0   0.0   0.00042       1.3       9      29 ..     162     183 ..     153     192 .. 0.72
   4 ?   -2.6   0.0       4.1   1.2e+04      13      29 ..     214     230 ..     205     235 .. 0.74
   5 !   23.6   0.5   2.3e-08   6.8e-05       6      38 .]     267     300 ..     262     300 .. 0.91
   6 ?    4.0   0.0     0.036   1.1e+02      13      38 .]     317     342 ..     304     342 .. 0.69
   7 ?    1.0   0.0      0.31   9.2e+02      16      37 ..     363     384 ..     345     385 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0013
                SEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40 12 svtslafspdgawlasGsdDgtvriWd 38
                 + +l f+p g++la +  Dg++ +W+
  CCD25721.1 68 EILALEFHPTGKYLAYSRVDGSLTVWS 94
                488999*******974567*******5 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.11
                 ESSSS..EEEEEEETTSSE.EEEEETTSEEEEE CS
        WD40   8 tGHss..vtslafspdgaw.lasGsdDgtvriW 37 
                 tG  +  +t+l+f+p+    +a+ s  + + iW
  CCD25721.1 113 TGN-DrvITDLSFNPSDLNeFATVSNSNEILIW 144
                 355.4567****999877667777778888887 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00042
                 SS.SSEEEEEEETTSSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGs 29 
                 G  s ++ ++f+p g+wl++ +
  CCD25721.1 162 GNkSKINKCSFDPKGDWLVATT 183
                 78455*************9765 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 4.1
                 EEEEEEETTSSEEEEEE CS
        WD40  13 vtslafspdgawlasGs 29 
                 v+ ++++ +g+ l+ G 
  CCD25721.1 214 VYFISWDNSGRNLFIGF 230
                 57788999999887775 PP

  == domain 5  score: 23.6 bits;  conditional E-value: 2.3e-08
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +l +H ssv++++ +p g+++a+Gs Dgt+ iWd
  CCD25721.1 267 SLCAHrSSVSAIKMDPWGRFVATGSSDGTCAIWD 300
                 6779*999****************99*******9 PP

  == domain 6  score: 4.0 bits;  conditional E-value: 0.036
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 v s++ +  g+ l+ +s D++ r+++
  CCD25721.1 317 VLSMDIDYIGKTLVVCSGDNKFRVFN 342
                 777777777888876766*****987 PP

  == domain 7  score: 1.0 bits;  conditional E-value: 0.31
                 EEEETTSSEEEEEETTSEEEEE CS
        WD40  16 lafspdgawlasGsdDgtvriW 37 
                 ++f p++ w++ ++++ t++++
  CCD25721.1 363 VKFFPNNFWFVLSDKNDTIKVF 384
                 4599999997647899999987 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0039        12      37      65 ..      65      93 ..      50      97 .. 0.85
   2 ?   -1.1   0.0      0.79   2.4e+03      34      66 ..     112     145 ..      98     161 .. 0.70
   3 !    6.7   0.0     0.003         9      27      70 ..     153     196 ..     122     210 .. 0.74
   4 !    7.7   0.0    0.0015       4.3      38      82 ..     211     255 ..     200     265 .. 0.82
   5 !   10.4   0.0   0.00021      0.64      35      69 ..     269     303 ..     253     320 .. 0.88
   6 !   10.8   0.0   0.00016      0.47      40      81 ..     316     357 ..     308     368 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0039
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysdgevrll 65
                 + +e+ +L+++p gk La +  dg++ + 
   CCD25721.1 65 TPNEILALEFHPTGKYLAYSRVDGSLTVW 93
                 567999******************98765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.79
  ANAPC4_WD40  34 edkedsevrsLaWkpdg.klLavaysdgevrlld 66 
                  ++++d+ +++L+++p++ + +a + + +e+ + +
   CCD25721.1 112 ATGNDRVITDLSFNPSDlNEFATVSNSNEILIWK 145
                  5678888999999987634566666666666655 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.003
  ANAPC4_WD40  27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  +++ t+++ +++s++++ ++ p+g  L+  ++   + l+++++ 
   CCD25721.1 153 NKLKTINSLGNKSKINKCSFDPKGDWLVATTKSECIYLFNVKED 196
                  66666677899***************************999765 PP

  == domain 4  score: 7.7 bits;  conditional E-value: 0.0015
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                  +  v  ++W ++g+ L ++++ g + +l   +++ ++  s +s++
   CCD25721.1 211 NDIVYFISWDNSGRNLFIGFKSGYLAVLTLDNEEKINDNSPGSNT 255
                  5567789***********************999998887776654 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00021
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  +++ s+v++++  p g++ a + sdg++ + d+++
   CCD25721.1 269 CAHRSSVSAIKMDPWGRFVATGSSDGTCAIWDIKT 303
                  678899*************************9987 PP

  == domain 6  score: 10.8 bits;  conditional E-value: 0.00016
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                   v s+     gk L+v   d++ r++++++g++++s++ ++ 
   CCD25721.1 316 AVLSMDIDYIGKTLVVCSGDNKFRVFNINTGELINSMDFEDY 357
                  5666777778*************************9988765 PP

>> MMS1_N  Mono-functional DNA-alkylating methyl methanesulfonate N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.18   5.4e+02      24      72 ..      48      97 ..      29     124 .. 0.66
   2 ?    0.8   0.1     0.049   1.5e+02     435     470 ..     144     200 ..     129     216 .. 0.56
   3 !   16.6   0.0     8e-07    0.0024       3      77 ..     226     311 ..     225     330 .. 0.89
   4 ?   -0.9   0.0      0.16   4.8e+02      50      78 ..     323     351 ..     319     370 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.18
      MMS1_N 24 fetvhshetlgksgsrrsqpGqyla..vDPkgraiavsayekvflvyslkk 72
                + +v   ++ ++ +s++ +p + la   +P+g+++a s ++++++v+s  +
  CCD25721.1 48 YTHVI-TKSKSRFSSSQMTPNEILAleFHPTGKYLAYSRVDGSLTVWSNIQ 97
                44444.4455555666666666666225799**********9999996544 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.049
      MMS1_N 435 wkppng...............ksiiaaaan.geqllvalsgrelvyf.eld....li 470
                 wkp+++               ++i +++++ +   lva++++e++y+ +++    l+
  CCD25721.1 144 WKPDQSpsinklktinslgnkSKINKCSFDpKGDWLVATTKSECIYLfNVKedysLV 200
                 444443333333222224433499999999866667777777777773553234433 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 8e-07
      MMS1_N   3 Lvvgsdsgelvflsynpekn........qfetvhshetlgksgsrrsqpGqylavDPkgraiavsayekvflvyslkk...keiln 77 
                 L++g +sg+l +l  ++e++          ++v+ + +l  s + + ++   +  DP gr++a++++++   ++ +k+   + i+n
  CCD25721.1 226 LFIGFKSGYLAVLTLDNEEKindnspgsNTDNVCTRFSLRFSLCAHRSSVSAIKMDPWGRFVATGSSDGTCAIWDIKTmccSMIFN 311
                 9************88888888899999999********************************************999977655555 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.16
      MMS1_N  50 DPkgraiavsayekvflvyslkkkeilnr 78 
                 D  g+ ++v++ +++f+v++++++e+ n+
  CCD25721.1 323 DYIGKTLVVCSGDNKFRVFNINTGELINS 351
                 66678889999999999999988777774 PP

>> DUF5046  Domain of unknown function (DUF5046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.27   8.1e+02      89     111 ..     230     252 ..     192     259 .. 0.78
   2 ?   11.0   0.0   7.2e-05      0.21      85     128 ..     318     363 ..     294     387 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.27
     DUF5046  89 ardktvavyatdgilrvydkttG 111
                  +++ +av+++d+  ++ d++ G
  CCD25721.1 230 FKSGYLAVLTLDNEEKINDNSPG 252
                 45677888888888888777666 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7.2e-05
     DUF5046  85 y..dvdardktvavyatdgilrvydkttGalltdvevepveeqqsv 128
                    d+d+  kt+ v + d+ +rv++ +tG+l+  ++ e  + q  v
  CCD25721.1 318 LsmDIDYIGKTLVVCSGDNKFRVFNINTGELINSMDFEDYNSQLIV 363
                 3349****************************99988877666555 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.45   1.3e+03     206     228 ..     176     198 ..     119     222 .. 0.49
   2 ?   12.5   0.3   2.2e-05     0.067       3      83 ..     275     356 ..     273     364 .. 0.88
   3 ?    5.5   0.3     0.003         9       3      59 ..     317     374 ..     315     381 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.45
   WD40_like 206 ddylivGgsfkyllliNiklnvn 228
                  d+l+   + + + l N+k +++
  CCD25721.1 176 GDWLVATTKSECIYLFNVKEDYS 198
                 34444444455555555553332 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.2e-05
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkl.ldddlilvvtlDGtillslleneeevenekiee 83 
                 + +i +++ g +++ G+ d +c++ ++++ +   i+++++  v+ + +   ++ ++v++ D ++    ++ +e +++ + e+
  CCD25721.1 275 VSAIKMDPWGRFVATGSSDGTCAIWDIKTMCCSMIFNGINGAVLSMDIdYIGKTLVVCSGDNKFRVFNINTGELINSMDFED 356
                 5578889999*********************************98875334678999****************999998876 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.003
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfed..Svifvklldddlilvv 59 
                 + s+di+  g+ +++ + d+k +v++++++e++ +++ fed  S + vk+  ++   v 
  CCD25721.1 317 VLSMDIDYIGKTLVVCSGDNKFRVFNINTGELINSMD-FEDynSQLIVKFFPNNFWFVL 374
                 66899999*************************9985.554448888999999987775 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.66     2e+03       9      37 ..      64      94 ..      57     108 .. 0.78
   2 ?    4.9   0.0    0.0062        19      19      51 ..     174     206 ..     158     215 .. 0.79
   3 ?    5.3   0.0    0.0046        14      22      45 ..     285     308 ..     269     320 .. 0.80
   4 ?   -4.0   0.2       3.2   9.7e+03     125     130 ..     440     445 ..     419     473 .. 0.45

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.66
        Hira  9 vlespasfLessg..syLlavtsvgllyvWn 37
                + ++++  Le++   +yL+    +g+l+vW 
  CCD25721.1 64 MTPNEILALEFHPtgKYLAYSRVDGSLTVWS 94
                556677788886555999999999******4 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.0062
        Hira  19 ssgsyLlavtsvgllyvWnvkkkkvllppvsla 51 
                  +g++L+a t++ ++y +nvk+  +l++  +++
  CCD25721.1 174 PKGDWLVATTKSECIYLFNVKEDYSLVSTLNVS 206
                 4789****************9999988766555 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0046
        Hira  22 syLlavtsvgllyvWnvkkkkvll 45 
                  +++  +s+g++ +W++k++++ +
  CCD25721.1 285 RFVATGSSDGTCAIWDIKTMCCSM 308
                 56666789************9976 PP

  == domain 4  score: -4.0 bits;  conditional E-value: 3.2
        Hira 125 ssassa 130
                 s+ +++
  CCD25721.1 440 SRRENS 445
                 111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       901  (0.0502538); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3299.52
//
Query:       CCD25722.1  [L=471]
Description: hypothetical protein NDAI_0F04040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-22   79.1   1.5    4.2e-22   78.5   1.5    1.3  1  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   1.5   2.3e-26   4.2e-22       4     326 ..      15     319 ..      12     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 2.3e-26
  Hyphal_reg_CWP   4 lialalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitstssllalsvtlasatgsieNnGiivfnseeslta 98 
                     l+++a+a+++       g +++    ++I++g++++i+  +   f+++l  +n+g+++++s +      vt     +s++N+G   ++++++l+ 
      CCD25722.1  15 LLNVASAFDLFGRLHYLGPVQYY-FPFSIKKGSVFAITRCKHAWFHDNL--NNQGDICVSSAN------VT----GNSFQNDGNFLLSDATDLS- 95 
                     55666666666666666777765.6789*******************85..59*******997......66....799*********9877655. PP

  Hyphal_reg_CWP  99 ssyklvgasFeNnGelylagsgs.vvastmeits.nsweNnGlivfyqsqrssgtvklgaalgsitNdGqIclknqayqqttsiqGsGCitvged 191
                         l  + F NnG  ++a +++     t+++ + ns+ N G+i++++      + +lg+++ ++ N G+I l+  + + ++s+ G GC+ + ++
      CCD25722.1  96 ----L--TDFSNNG--FFAMRDTvRPIGTTKLFAkNSFINLGIIHIET----ILQHTLGTGGANMLNRGTIVLNGGNHTLRSSLVGGGCLALLKQ 178
                     ....5..789****..6666665236678999999**********975....556789999********************************** PP

  Hyphal_reg_CWP 192 ssiyisnsllsissdqtiYLadsssslvvesvsk..pqtfkvagFGngnkigltlpllgl.vlssisYdsdtgiLtlral.........llsqkF 274
                      +++i    +s+  d+ iYL + + +++++ + +    +++ +gF +++ + ++ + ++   l   sY+  tg+L + ++         +l+   
      CCD25722.1 179 EELHID---ISTTVDNLIYLDSANKEIHFSGMPNliGLPMTFSGFTKNHDLYFHGSQTSRtHLLVGSYSPLTGTLVIITTpkpfsgaydILTRSI 270
                     ***994...56789***************777643377799************9887666777889**********988899****999889999 PP

  Hyphal_reg_CWP 275 nIGtGYdsskFeivtdagagllsvqngavtYngpvPsrslPsaCqaCksvpe 326
                      IG GYd   F++   + +gl+      +tYn++ P++ +P+ C+   +vp+
      CCD25722.1 271 YIGFGYDMFRFNFEFMTYRGLP---VVHITYNKQGPNQGVPHRCRIDATVPN 319
                     9*******99987777777777...669****************96666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       666  (0.0371465); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3384.15
//
Query:       CCD25723.1  [L=755]
Description: hypothetical protein NDAI_0F04050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-32  111.8   3.3    3.1e-32  111.8   3.3    1.7  2  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   3.3   1.7e-36   3.1e-32       3     325 ..      14     328 ..      12     330 .. 0.85
   2 ?   -2.3   0.1     0.092   1.6e+03       7      36 ..     449     479 ..     446     496 .. 0.66

  Alignments for each domain:
  == domain 1  score: 111.8 bits;  conditional E-value: 1.7e-36
  Hyphal_reg_CWP   3 llialalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitstssllalsvtlasatgsieNnGiivf.nseesl 96 
                     l+++la+al+i+++   +g+++++ ++++I +g +++i    +++f+++l+  nng+l++ s+     +++       s++N+G +v+ n ++ +
      CCD25723.1  14 LIYQLAAALDITKDLNLYGSAEYT-DSISIGKGLIFAISGGEKVEFQNNLH--NNGDLCVGSHH----VHF----GCPSLKNDGNLVVhNPQKYT 97 
                     7899*******************9.***********************866..********997....333....35699******994555556 PP

  Hyphal_reg_CWP  97 tassyklvgasFeNnGelylagsgsvvastm..eitsnsweNnGlivfyqsqrssgtvklgaalgsitNdGqIclknqayqqttsiqGsGCitvg 189
                      + s++++ + F NnG  +la ++s ++s +   +ts+++ N G+i++++s r    ++lga+++si+N+G+  ++  +y+ ++si G GCi ++
      CCD25723.1  98 VSGSMDFLLTDFLNNG--FLAIHNSFASSMFgsILTSKTFINIGVIHIETSMR----LTLGASSTSIQNKGTMIFNGGNYTLDSSIIGGGCIAMQ 186
                     699*************..6666665444333215778***********98876....68999********************************* PP

  Hyphal_reg_CWP 190 edssiyisnsllsissdqtiYLadsssslvvesvsk..pqtfkvagFGngnkigltlpllgl.vlssisYdsdtgiLtlral.........llsq 272
                     ++ +i+i     s   dqt+Y  + + +++++   +    ++  +gF n +++ ++ + +        +Y+  tg + + ++         +++ 
      CCD25723.1 187 NKHEIHIDI---SKTFDQTFYCDSYEKEIHFTGLPNliGLPIVFNGFSNTHELYFHGSQTARtHFLVGKYSPLTGLIVIVTTpipfrgawdVMTR 278
                     *****9954...4478***************776633377799************88855446567789******888877789****9876678 PP

  Hyphal_reg_CWP 273 kFnIGtGYdsskFeivtdagagllsvqngavtYngpvPsrslPsaCqaCksvp 325
                        +G GYd  +F++   +++gl+      v Yn+p+P++s+P  C+  + +p
      CCD25723.1 279 SIFVGYGYDMFQFKFEFISHRGLP---CVHVHYNKPCPHPSIPPHCNITTGLP 328
                     8889******99987677777787...679****************9776665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.092
  Hyphal_reg_CWP   7 lalaleisentvdrgainlgi.gdltInsga 36 
                     ++ a ++++n+++ g+++ ++  +l I++++
      CCD25723.1 449 VTGASSVTSNRITSGTLTESCsTSLVITTNT 479
                     5667778888888888877765666665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       495  (0.0276089); expected 358.6 (0.02)
Passed bias filter:                      249  (0.0138881); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.28s 00:00:00.89 Elapsed: 00:00:00.43
# Mc/sec: 5227.19
//
Query:       CCD25724.1  [L=906]
Description: hypothetical protein NDAI_0F04060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-32  110.4   5.7      2e-31  109.1   5.7    1.6  1  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.1   5.7   1.1e-35     2e-31       3     319 ..      14     320 ..      12     327 .. 0.87

  Alignments for each domain:
  == domain 1  score: 109.1 bits;  conditional E-value: 1.1e-35
  Hyphal_reg_CWP   3 llialalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitstssllalsvtlasatgsieNnGiivfnseeslt 97 
                     ll++la+a++i  n+ ++g+ +++ + ++I+++++++i + +++ f+++   +n+g+++  s+       v+    +g+++N+G +++ +    +
      CCD25724.1  14 LLCQLATAVDIRFNEFHEGSKEYN-DPYDIEKDVTFAISKGNKVGFHKN--MHNKGRFCCGSHH------VH--FGSGELHNDGDMIIHNPGPAS 97 
                     5789*******************9.***********************8..56********997......44..4589***************** PP

  Hyphal_reg_CWP  98 assyklvgasFeNnGelylagsgsvvastmeits.nsweNnGlivfyqsqrssgtvklgaalgsitNdGqIclknqayqqttsiqGsGCitvged 191
                      ++++++ +s+ N+G l ++   +  +s  ++ + +s+ N+G+i++++ +   ++vk++++++ i+N+G+  ++  +y+ ++si+G GCi ++  
      CCD25724.1  98 DANVNFTLNSLSNSGLLSIQNTYE-SNSIGQLFAkDSFINSGIIYMETVK---QHVKVHTSSSYINNKGTMIFNGGNYSLQSSIKGHGCIALQGH 188
                     ***************999999886.88999999999**********8755...5677888999******************************** PP

  Hyphal_reg_CWP 192 ssiyisnsllsissdqtiYLadsssslvv..esvskpqtfkvagFGngnkigltlpllgl.vlssisYdsdtgiLtlral.......llsqkFnI 276
                      +iyi    ++++ +qt+Y  d++ +l++  + +s++++  ++gF n + + ++ + + +     +sY+s tg +++ ++        ++ +  I
      CCD25724.1 189 HHIYID---MKYNYEQTFYCDDNEKELHFlgSPSSSSSPLILHGFSNQHSMYFHGSETAKtHRLVTSYNSLTGYMSVITKpikgkssPVERRIFI 280
                     *****4...5889****************6433334666**************8775444566789***********98888888654478999* PP

  Hyphal_reg_CWP 277 GtGYdsskFeivtdagagllsvqngavtYngpvPsrslPsaCq 319
                     G+GY+++ F++     +g   ++ g  +Y++p+P++++P +C+
      CCD25724.1 281 GLGYEHKYFSFEFTKYNGHN-CIHG--NYHKPCPHPTRPPVCH 320
                     *********84444444443.4444..6**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1074  (0.059903); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.53u 0.38s 00:00:01.91 Elapsed: 00:00:00.55
# Mc/sec: 4950.34
//
Query:       CCD25725.1  [L=445]
Description: hypothetical protein NDAI_0F04070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-29  100.0   0.1    2.1e-28   98.9   0.1    1.6  1  RTC4      RTC4-like domain


Domain annotation for each model (and alignments):
>> RTC4  RTC4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.1   1.2e-32   2.1e-28       2     120 ..     288     411 ..     287     412 .. 0.95

  Alignments for each domain:
  == domain 1  score: 98.9 bits;  conditional E-value: 1.2e-32
        RTC4   2 gkkeSvyrdeakeavkksgkrklskeekrkldlekftpGYYGlkgqriiseeilkkfkkelrkravkdklvsargvsdFvqaVLvPEvavrLimeDmkv 100
                 gk +S y+ ea+ea+++s+k +ls ee+r+ldl+kf +G+YG+k+q +++eeil+ +kk+l++  +k+++++++g++dF ++VL+PEv++++ m  m+ 
  CCD25725.1 288 GKLASIYYFEAREAFEHSSKPYLSIEEFRRLDLNKFLAGFYGFKRQFKVGEEILNVYKKSLER--NKSATLRWWGIEDFSKYVLAPEVLASFQMSRMQA 384
                 7889**********************************************************9..99******************************77 PP

        RTC4 101 se.......eeAreileesaeyGelvn 120
                  +       +e+++++++++eyG  v 
  CCD25725.1 385 IKkndsverQEVYDLFDDTVEYGISVS 411
                 666788888**************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1100  (0.0613531); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3293.10
//
Query:       CCD25726.1  [L=158]
Description: hypothetical protein NDAI_0F04080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.9e-57  187.1  58.8    4.4e-09   36.0   2.6    7.1  7  zf-CCHC     Zinc knuckle
    6.2e-14   51.5  39.7      0.006   16.3   0.4    7.0  7  zf-CCHC_4   Zinc knuckle
      3e-08   33.5  45.5       0.27   11.2   1.0    7.0  7  zf-CCHC_3   Zinc knuckle
    7.5e-06   25.6  37.4       0.41   10.4   0.1    7.1  7  zf-CCHC_5   GAG-polyprotein viral zinc-finger
     0.0072   16.0   2.6     0.0072   16.0   2.6    6.6  7  zf-C2H2_10  C2H2 zinc-finger
  ------ inclusion threshold ------
      0.015   15.1  55.1       0.02   14.7   1.2    6.9  7  zf-CCHC_2   Zinc knuckle
        2.1    8.3  44.4        0.2   11.5   1.4    7.1  7  zf-CCHC_6   Zinc knuckle


Domain annotation for each model (and alignments):
>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.6   2.2e-09   5.6e-06       1      18 []       4      21 ..       4      21 .. 0.92
   2 !   30.9   1.6   7.1e-11   1.8e-07       2      18 .]      24      40 ..      23      40 .. 0.94
   3 !   30.6   1.8   8.8e-11   2.3e-07       2      17 ..      48      63 ..      47      64 .. 0.94
   4 !   33.9   3.0     8e-12   2.1e-08       2      18 .]      66      82 ..      65      82 .. 0.94
   5 !   30.4   2.2     1e-10   2.6e-07       2      18 .]     100     116 ..      99     116 .. 0.93
   6 !   36.0   2.6   1.7e-12   4.4e-09       1      18 []     119     136 ..     119     136 .. 0.94
   7 !   34.7   2.7   4.5e-12   1.1e-08       1      18 []     141     158 .]     141     158 .] 0.94

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 2.2e-09
                SCTSSSSSSSSTTTTSTS CS
     zf-CCHC  1 rkCynCGepGHiardCpk 18
                r+Cy CG++GH+a dC++
  CCD25726.1  4 RACYVCGKIGHLAEDCDS 21
                58**************85 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 7.1e-11
                CTSSSSSSSSTTTTSTS CS
     zf-CCHC  2 kCynCGepGHiardCpk 18
                 CynC++pGH+ ++Cp+
  CCD25726.1 24 LCYNCNQPGHVQSECPQ 40
                5***************7 PP

  == domain 3  score: 30.6 bits;  conditional E-value: 8.8e-11
                CTSSSSSSSSTTTTST CS
     zf-CCHC  2 kCynCGepGHiardCp 17
                +CynCGe+GH+ ++C+
  CCD25726.1 48 QCYNCGETGHVRSECT 63
                8**************8 PP

  == domain 4  score: 33.9 bits;  conditional E-value: 8e-12
                CTSSSSSSSSTTTTSTS CS
     zf-CCHC  2 kCynCGepGHiardCpk 18
                 CynC+++GHi++dCp+
  CCD25726.1 66 RCYNCNQTGHISKDCPE 82
                7***************6 PP

  == domain 5  score: 30.4 bits;  conditional E-value: 1e-10
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                  Cy+CG+p H+a+dC++
  CCD25726.1 100 SCYKCGGPNHMAKDCTE 116
                 6**************96 PP

  == domain 6  score: 36.0 bits;  conditional E-value: 1.7e-12
                 SCTSSSSSSSSTTTTSTS CS
     zf-CCHC   1 rkCynCGepGHiardCpk 18 
                 +kCynCG++GH++rdCp+
  CCD25726.1 119 PKCYNCGNTGHLSRDCPE 136
                 59***************6 PP

  == domain 7  score: 34.7 bits;  conditional E-value: 4.5e-12
                 SCTSSSSSSSSTTTTSTS CS
     zf-CCHC   1 rkCynCGepGHiardCpk 18 
                 ++Cy+C+e+GHi+rdCp+
  CCD25726.1 141 KTCYKCNETGHISRDCPN 158
                 58***************6 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.4   2.3e-06     0.006      31      48 ..       3      20 ..       3      21 .. 0.92
   2 !   12.9   0.1   2.7e-05     0.068      33      48 ..      24      39 ..      22      40 .. 0.91
   3 !   12.1   1.6   4.7e-05      0.12      34      48 ..      49      63 ..      45      64 .. 0.91
   4 !   10.9   0.8   0.00011      0.28      34      48 ..      67      81 ..      64      82 .. 0.92
   5 !    6.5   0.5    0.0027         7      33      48 ..     100     115 ..      97     116 .. 0.88
   6 !   11.7   0.3   6.2e-05      0.16      33      48 ..     120     135 ..     118     136 .. 0.93
   7 !    7.1   0.6    0.0017       4.4      33      48 ..     142     157 ..     140     158 .] 0.91

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.3e-06
   zf-CCHC_4 31 rsfCyiCgvlGHsdkrCd 48
                +++Cy+Cg +GH +++Cd
  CCD25726.1  3 QRACYVCGKIGHLAEDCD 20
                589**************8 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.7e-05
   zf-CCHC_4 33 fCyiCgvlGHsdkrCd 48
                +Cy+C+  GH+ ++C+
  CCD25726.1 24 LCYNCNQPGHVQSECP 39
                7**************8 PP

  == domain 3  score: 12.1 bits;  conditional E-value: 4.7e-05
   zf-CCHC_4 34 CyiCgvlGHsdkrCd 48
                Cy+Cg  GH++++C 
  CCD25726.1 49 CYNCGETGHVRSECT 63
                **************6 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 0.00011
   zf-CCHC_4 34 CyiCgvlGHsdkrCd 48
                Cy+C+  GH  k+C+
  CCD25726.1 67 CYNCNQTGHISKDCP 81
                **************8 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.0027
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                  Cy Cg  +H +k+C 
  CCD25726.1 100 SCYKCGGPNHMAKDCT 115
                 4**************6 PP

  == domain 6  score: 11.7 bits;  conditional E-value: 6.2e-05
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                 +Cy+Cg  GH  ++C+
  CCD25726.1 120 KCYNCGNTGHLSRDCP 135
                 6**************8 PP

  == domain 7  score: 7.1 bits;  conditional E-value: 0.0017
   zf-CCHC_4  33 fCyiCgvlGHsdkrCd 48 
                  Cy C+  GH  ++C+
  CCD25726.1 142 TCYKCNETGHISRDCP 157
                 6**************8 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.6    0.0038       9.6       4      21 ..       3      20 ..       1      23 [. 0.83
   2 !   11.2   1.0    0.0001      0.27       4      27 ..      22      43 ..      20      47 .. 0.83
   3 !    5.6   6.6    0.0061        16       4      21 ..      46      63 ..      43      68 .. 0.85
   4 !    9.6   1.1   0.00035       0.9       5      29 ..      65      88 ..      63      94 .. 0.81
   5 !   10.4   0.5   0.00019      0.49       2      21 ..      96     115 ..      95     120 .. 0.85
   6 !   10.4   0.4   0.00019      0.48       6      22 ..     120     136 ..     115     142 .. 0.80
   7 !    9.3   0.7   0.00043       1.1       5      22 ..     141     158 .]     137     158 .] 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0038
   zf-CCHC_3  4 saaCQkClkkGHwtYECk 21
                + aC  C+k GH++  C 
  CCD25726.1  3 QRACYVCGKIGHLAEDCD 20
                679999*******98886 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.0001
   zf-CCHC_3  4 saaCQkClkkGHwtYECknagerk 27
                 ++C +C ++GH   EC+  + r+
  CCD25726.1 22 EKLCYNCNQPGHVQSECP--QPRT 43
                589***************..6555 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0061
   zf-CCHC_3  4 saaCQkClkkGHwtYECk 21
                +++C +C+++GH   EC+
  CCD25726.1 46 HKQCYNCGETGHVRSECT 63
                789**************8 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00035
   zf-CCHC_3  5 aaCQkClkkGHwtYECknagerkyt 29
                ++C +C ++GH +  C++  +++y 
  CCD25726.1 65 QRCYNCNQTGHISKDCPE-PKKPYN 88
                59***************4.445665 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 0.00019
   zf-CCHC_3   2 nasaaCQkClkkGHwtYECk 21 
                 n ++ C kC+++ H++  C+
  CCD25726.1  96 NSRVSCYKCGGPNHMAKDCT 115
                 56789**********99998 PP

  == domain 6  score: 10.4 bits;  conditional E-value: 0.00019
   zf-CCHC_3   6 aCQkClkkGHwtYECkn 22 
                  C +C+ +GH++  C++
  CCD25726.1 120 KCYNCGNTGHLSRDCPE 136
                 699************93 PP

  == domain 7  score: 9.3 bits;  conditional E-value: 0.00043
   zf-CCHC_3   5 aaCQkClkkGHwtYECkn 22 
                 ++C kC ++GH +  C+n
  CCD25726.1 141 KTCYKCNETGHISRDCPN 158
                 79***********99984 PP

>> zf-CCHC_5  GAG-polyprotein viral zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.1   0.00016      0.41       5      20 ..       6      21 ..       3      23 .. 0.91
   2 !    7.0   0.4    0.0018       4.7       2      18 ..      22      38 ..      21      40 .. 0.93
   3 !    6.9   0.3    0.0019       4.9       5      19 ..      49      63 ..      46      65 .. 0.91
   4 !    4.9   0.4    0.0081        21       3      18 ..      65      80 ..      63      82 .. 0.92
   5 !    9.1   0.5   0.00041       1.1       5      18 ..     101     114 ..      99     116 .. 0.94
   6 !    5.9   0.7    0.0041        10       4      18 ..     120     134 ..     117     135 .. 0.93
   7 !    6.3   1.2     0.003       7.6       2      18 ..     140     156 ..     139     157 .. 0.91

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00016
                -TTT-SSBS-TTT--- CS
   zf-CCHC_5  5 CpRCkkgkHwardChs 20
                C  C+k  H a dC s
  CCD25726.1  6 CYVCGKIGHLAEDCDS 21
                889***********98 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0018
                --B-TTT-SSBS-TTT- CS
   zf-CCHC_5  2 pglCpRCkkgkHwardC 18
                + lC  C +  H+ ++C
  CCD25726.1 22 EKLCYNCNQPGHVQSEC 38
                679************** PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0019
                -TTT-SSBS-TTT-- CS
   zf-CCHC_5  5 CpRCkkgkHwardCh 19
                C  C+   H+ ++C 
  CCD25726.1 49 CYNCGETGHVRSECT 63
                99************5 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0081
                -B-TTT-SSBS-TTT- CS
   zf-CCHC_5  3 glCpRCkkgkHwardC 18
                 +C  C +  H  +dC
  CCD25726.1 65 QRCYNCNQTGHISKDC 80
                59************** PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.00041
                 -TTT-SSBS-TTT- CS
   zf-CCHC_5   5 CpRCkkgkHwardC 18 
                 C +C+   H a+dC
  CCD25726.1 101 CYKCGGPNHMAKDC 114
                 9************* PP

  == domain 6  score: 5.9 bits;  conditional E-value: 0.0041
                 B-TTT-SSBS-TTT- CS
   zf-CCHC_5   4 lCpRCkkgkHwardC 18 
                  C  C+   H  rdC
  CCD25726.1 120 KCYNCGNTGHLSRDC 134
                 699************ PP

  == domain 7  score: 6.3 bits;  conditional E-value: 0.003
                 --B-TTT-SSBS-TTT- CS
   zf-CCHC_5   2 pglCpRCkkgkHwardC 18 
                 +  C +C    H  rdC
  CCD25726.1 140 EKTCYKCNETGHISRDC 156
                 678************** PP

>> zf-C2H2_10  C2H2 zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.5     0.052   1.3e+02       6      14 ..       6      14 ..       2      19 .. 0.81
   2 !   10.6   0.3   0.00014      0.35       6      20 ..      25      39 ..      21      40 .. 0.82
   3 !   16.0   2.6   2.8e-06    0.0072       3      20 ..      46      63 ..      45      65 .. 0.90
   4 !    4.9   1.4    0.0087        22       9      14 ..      70      75 ..      66      80 .. 0.85
   5 ?   -2.5   0.0       1.8   4.7e+03      15      21 ..      97     103 ..      95     103 .. 0.71
   6 ?    1.0   1.4      0.15   3.7e+02       6      14 ..     121     129 ..     119     134 .. 0.82
   7 !    6.3   1.8    0.0032       8.1       4      14 ..     141     151 ..     140     156 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.052
  zf-C2H2_10  6 CSYChetGH 14
                C  C ++GH
  CCD25726.1  6 CYVCGKIGH 14
                666****** PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00014
  zf-C2H2_10  6 CSYChetGHtRAkCe 20
                C  C+++GH+ + C 
  CCD25726.1 25 CYNCNQPGHVQSECP 39
                666*******99996 PP

  == domain 3  score: 16.0 bits;  conditional E-value: 2.8e-06
  zf-C2H2_10  3 kitCSYChetGHtRAkCe 20
                +++C  C etGH+R+ C 
  CCD25726.1 46 HKQCYNCGETGHVRSECT 63
                689999***********7 PP

  == domain 4  score: 4.9 bits;  conditional E-value: 0.0087
  zf-C2H2_10  9 ChetGH 14
                C++tGH
  CCD25726.1 70 CNQTGH 75
                ****** PP

  == domain 5  score: -2.5 bits;  conditional E-value: 1.8
  zf-C2H2_10  15 tRAkCek 21 
                 +R +C+k
  CCD25726.1  97 SRVSCYK 103
                 6778876 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 0.15
  zf-C2H2_10   6 CSYChetGH 14 
                 C  C  tGH
  CCD25726.1 121 CYNCGNTGH 129
                 666****** PP

  == domain 7  score: 6.3 bits;  conditional E-value: 0.0032
  zf-C2H2_10   4 itCSYChetGH 14 
                 +tC  C+etGH
  CCD25726.1 141 KTCYKCNETGH 151
                 57777****** PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.6    0.0037       9.5       6      19 ..       6      19 ..       5      20 .. 0.93
   2 ?    9.7   2.4   0.00028      0.73       6      21 .]      25      40 ..      24      40 .. 0.89
   3 ?    4.8   1.6    0.0097        25       5      19 ..      48      62 ..      48      62 .. 0.87
   4 ?    9.3   2.4   0.00037      0.96       6      21 .]      67      82 ..      66      82 .. 0.91
   5 ?   -3.5   1.8       3.8   9.6e+03       9      14 ..     104     109 ..     101     114 .. 0.54
   6 ?   14.7   1.2   7.8e-06      0.02       5      21 .]     120     136 ..     120     136 .. 0.93
   7 ?    6.5   1.7    0.0029       7.6       9      21 .]     146     158 .]     142     158 .] 0.89

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0037
   zf-CCHC_2  6 ChiCgkkGHyIqdC 19
                C +Cgk GH   dC
  CCD25726.1  6 CYVCGKIGHLAEDC 19
                889*******9999 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00028
   zf-CCHC_2  6 ChiCgkkGHyIqdCPt 21
                C  C+++GH  ++CP+
  CCD25726.1 25 CYNCNQPGHVQSECPQ 40
                889******9999997 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0097
   zf-CCHC_2  5 vChiCgkkGHyIqdC 19
                +C  Cg  GH  ++C
  CCD25726.1 48 QCYNCGETGHVRSEC 62
                5889******88888 PP

  == domain 4  score: 9.3 bits;  conditional E-value: 0.00037
   zf-CCHC_2  6 ChiCgkkGHyIqdCPt 21
                C  C++ GH  +dCP+
  CCD25726.1 67 CYNCNQTGHISKDCPE 82
                778************6 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 3.8
   zf-CCHC_2   9 CgkkGH 14 
                 Cg + H
  CCD25726.1 104 CGGPNH 109
                 555555 PP

  == domain 6  score: 14.7 bits;  conditional E-value: 7.8e-06
   zf-CCHC_2   5 vChiCgkkGHyIqdCPt 21 
                 +C  Cg+ GH  +dCP+
  CCD25726.1 120 KCYNCGNTGHLSRDCPE 136
                 6899************6 PP

  == domain 7  score: 6.5 bits;  conditional E-value: 0.0029
   zf-CCHC_2   9 CgkkGHyIqdCPt 21 
                 C+  GH  +dCP+
  CCD25726.1 146 CNETGHISRDCPN 158
                 ************6 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.8    0.0071        18       4      14 ..       6      16 ..       3      19 .. 0.86
   2 ?    2.6   0.1     0.049   1.2e+02       4      21 ..      25      40 ..      24      45 .. 0.87
   3 ?    5.4   1.6    0.0063        16       3      15 ..      48      60 ..      46      63 .. 0.86
   4 ?    5.9   0.5    0.0045        12       3      20 ..      66      81 ..      65      89 .. 0.86
   5 ?    4.2   1.3     0.015        38       1      15 [.      98     112 ..      98     115 .. 0.87
   6 ?   11.5   1.4   7.8e-05       0.2       3      20 ..     120     135 ..     119     137 .. 0.91
   7 ?    1.4   0.7      0.11   2.8e+02       4      20 ..     143     157 ..     141     158 .] 0.83

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0071
   zf-CCHC_6  4 CknCGAFGHta 14
                C  CG +GH a
  CCD25726.1  6 CYVCGKIGHLA 16
                999******98 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.049
   zf-CCHC_6  4 CknCGAFGHtarSkrCPm 21
                C nC   GH    + CP+
  CCD25726.1 25 CYNCNQPGHVQ--SECPQ 40
                999*999**99..78997 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0063
   zf-CCHC_6  3 KCknCGAFGHtar 15
                 C nCG  GH ++
  CCD25726.1 48 QCYNCGETGHVRS 60
                5*********885 PP

  == domain 4  score: 5.9 bits;  conditional E-value: 0.0045
   zf-CCHC_6  3 KCknCGAFGHtarSkrCP 20
                +C nC   GH    k CP
  CCD25726.1 66 RCYNCNQTGHIS--KDCP 81
                8*********85..9999 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.015
   zf-CCHC_6   1 rvKCknCGAFGHtar 15 
                 rv C +CG   H+a+
  CCD25726.1  98 RVSCYKCGGPNHMAK 112
                 899******999995 PP

  == domain 6  score: 11.5 bits;  conditional E-value: 7.8e-05
   zf-CCHC_6   3 KCknCGAFGHtarSkrCP 20 
                 KC nCG  GH    + CP
  CCD25726.1 120 KCYNCGNTGHLS--RDCP 135
                 9*********96..8898 PP

  == domain 7  score: 1.4 bits;  conditional E-value: 0.11
   zf-CCHC_6   4 CknCGAFGHtarSkrCP 20 
                 C +C   GH    + CP
  CCD25726.1 143 CYKCNETGHIS--RDCP 157
                 88999999975..8899 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      160  (0.00892409); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1148.80
//
Query:       CCD25727.1  [L=816]
Description: hypothetical protein NDAI_0F04090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.5e-53  181.3   0.0    3.1e-52  177.7   0.0    2.2  1  Pterin_bind  Pterin binding enzyme
    7.7e-41  139.1   0.1    5.2e-20   72.1   0.2    2.4  2  FolB         Dihydroneopterin aldolase
      2e-33  115.3   0.0    6.9e-33  113.5   0.0    2.0  2  HPPK         7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin


Domain annotation for each model (and alignments):
>> Pterin_bind  Pterin binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.7   0.0   5.1e-56   3.1e-52       1     244 []     501     797 ..     501     797 .. 0.89

  Alignments for each domain:
  == domain 1  score: 177.7 bits;  conditional E-value: 5.1e-56
                  EEEEETTTTTCHCCHHCTHHHHH..HHHHHHHHHTT-S.....EEEEESS-TSTT--CCHHHHHHHHHHHHHHHHHH.....HCTSEEEEE-S-HHHH CS
  Pterin_bind   1 mgilNvtpdsfsdggkfedldka..laqarkmveeGAd.....ilDiggestrPgaervdeeeelervvpvlealrd.....eadvpisiDttkaeva 86 
                  mgilNvtpdsfsdgg++++  ++  ++ +++m  +  +     i+Digg strPg+     eeel+r +pv++a+r+     + ++ +siDt++aeva
   CCD25727.1 501 MGILNVTPDSFSDGGEHFSTTTIkeINFVKEMCVQVFQlhesiIIDIGGCSTRPGSIQATLEEELKRTIPVIKAIRScnelpQEKIILSIDTYRAEVA 598
                  9****************888766225668888765433333339********************************99866444889*********** PP

                  HHHHHTTSEEEEETTTTSSSTTHHHHHHHH.T-EEEEESEC..............................SSTTTHCCCCCCCSSHHHHHHHHHHHH CS
  Pterin_bind  87 eaAlkagadivNdvsgeerdpkmlelvaea.gaavvvmhmr..............................gtpktmqeeegqyedvveeveaflear 153
                  ++ ++ag+divNd+sg+  d  m++++a + ++ +v+ h+r                              g     +e  + + + ++ + ++l++r
   CCD25727.1 599 RQSIEAGVDIVNDISGGLFDDGMFKVIAANpRVSYVLSHIRgdisnmnkmnkytntttdneggmnlieyinG-----KECDIPEAQFMKVIGRELSQR 691
                  ************************99765439*****************************99976544222.....23335678899********** PP

                  HHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHHTTS...............SEBEEEGTTGHHHHHHHCTTCHGHHHHHHHHHHHHHHHT CS
  Pterin_bind 154 veaaeeaGvaperillDpgigfgkteehnlellrrldelreale...............vpvllGvSrksflgrllelgkaeeRdagtaaflalaaaa 236
                   + a + G+++++i+lDpgigf+k+ ++nl+++r+++ l++                  +p+llG Srk+f+g++++++++ +Rd +t  ++a ++  
   CCD25727.1 692 YKLAIANGIRRWQIILDPGIGFAKDSNQNLQIIRDIPILKNYSCsedgdketvfanfknIPILLGPSRKKFIGKITKDEDPVARDFATGSIVASCVGF 789
                  ***************************************655548899***************************98788****************** PP

                  T-SEEEES CS
  Pterin_bind 237 GadivrVh 244
                  G +ivrVh
   CCD25727.1 790 GTNIVRVH 797
                  *******9 PP

>> FolB  Dihydroneopterin aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   1.7e-21     1e-17       1     100 [.      11     112 ..      11     121 .. 0.93
   2 !   72.1   0.2   8.6e-24   5.2e-20       1     111 []     139     248 ..     139     248 .. 0.88

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 1.7e-21
                 EEEEEEEEEEEESSSHHHHHC-EEEEEEEEEEE-CHHHHHHTTGGGSS-HHHHHHHHHHHHH.SSEES-HHHHHHHHHHHHHCHST.ESEEEEEEEETT CS
        FolB   1 ieikglrvpaiiGvnpeErelkQrvvvdleleldlskaaesddledtvdYaelakavkelve.sssfkllEalaeriaealleefp.vekvevrveKpn 97 
                 i ik+l + ++iG +++ r+++Q+++++l+l +d++k++++ddl+++++Ya+++++v++l++ +  +  l +l ++i ++l++++p ++ ++++v+ +n
  CCD25727.1  11 INIKNLNISTTIGSDAWGRHQPQTCLISLKLGTDFQKSSTTDDLNYSLNYATICRDVRNLIKkKLDWVNLCTLTNSITSTLCNTYPgIKDLKITVQALN 109
                 78************************************************************8889999***************************999 PP

                 SSS CS
        FolB  98 api 100
                  ++
  CCD25727.1 110 THL 112
                 874 PP

  == domain 2  score: 72.1 bits;  conditional E-value: 8.6e-24
                 EEEEEEEEEEEESSSHHHHHC-EEEEEEEEEEE-CHHHHHHTTGGGSS-HHHHHHHHHHHHHSSEES-HHHHHHHHHHHHHCHSTESEEE.......EE CS
        FolB   1 ieikglrvpaiiGvnpeErelkQrvvvdleleldlskaaesddledtvdYaelakavkelvesssfkllEalaeriaealleefpvekve.......vr 92 
                 ++i++l+++++iGv+ +Er++kQ++ +++ l +       + + ++ v Ya+++++v+++ve+s+fk++Eal+e++++ + +e   +++        v+
  CCD25727.1 139 LHIRNLELFTLIGVFTFERLQKQKISLNIILPW------LTTN-REDVPYASIINNVVKYVENSNFKTVEALVESVSKLISQEQYYQNILdlnlpilVE 230
                 69*****************************87......3444.4669**************99****************87755666555778888** PP

                 EEETTSSSTCESEEEEEEE CS
        FolB  93 veKpnapigaadavgveit 111
                 v K +a i+++d+vgv++t
  CCD25727.1 231 VIKHSA-IMDTDGVGVSCT 248
                 ******.6779*****986 PP

>> HPPK  7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.6   9.7e+03      54      84 ..     195     224 ..     175     248 .. 0.55
   2 !  113.5   0.0   1.2e-36   6.9e-33       1     111 [.     296     429 ..     296     430 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.6
                 S-HHHHHHHHHHHHHHTT--CSTS-BS-EEE CS
        HPPK  54 lspeellealkeiEkelgrerrwgpRtlDlD 84 
                  + +++ + ++++ k + +e+ + + +lDl 
  CCD25727.1 195 SNFKTVEALVESVSKLISQEQ-YYQNILDLN 224
                 333333334444444443333.444444444 PP

  == domain 2  score: 113.5 bits;  conditional E-value: 1.2e-36
                 EEEEEE-SSSHHHHHHHHHHHHHH....EEEEE---EEE--S...SS-GEEEEEEEEEESS-HHHHHHHHHHHHH.HTT--C..STS-BS-EEEEEEET CS
        HPPK   1 ylalGsNlgdreanleealealee....kvvkvSslyetepv...dqpdFlNavvevetelspeellealkeiEk.elgrer..rwgpRtlDlDillyg 89 
                 yla+GsN+gd+ +++e+a++ l++    k++++Ssl+e+ep+   dq+ F+N +++++t++ p+ell+ +keiE  el+r++  ++gpR +DlDi+ly 
  CCD25727.1 296 YLAFGSNIGDKLQYIESAITILSNdpkiKITQTSSLFESEPMyfkDQDPFMNGCIQIKTKYLPQELLSICKEIEYdELKRVKhfDNGPRCIDLDIILYL 394
                 89********************887877889***********9988999*************************85789997556************99 PP

                 .............EEES-TTGGG-HHHHHHHHHHC CS
        HPPK  90 .............ltlPhprlaeraFvlvplaela 111
                              l++Phpr+ er+Fvl+pl+el 
  CCD25727.1 395 nssnehitinepnLVIPHPRMLERSFVLEPLCELI 429
                 9*******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       662  (0.0369234); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 5465.38
//
Query:       CCD25728.1  [L=1274]
Description: hypothetical protein NDAI_0F04100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-15   56.7   0.7    1.4e-14   54.7   0.7    2.1  1  VASt             VAD1 Analog of StAR-related lipid transfer d
    8.1e-11   42.4   3.8    9.7e-11   42.1   0.1    3.1  3  PH               PH domain
    2.1e-09   37.4   1.3    2.1e-09   37.4   1.3    2.1  2  BAR_3            BAR domain of APPL family
  ------ inclusion threshold ------
      0.087   13.2   0.1        1.4    9.3   0.0    2.6  2  Gal_mutarotas_2  Galactose mutarotase-like


Domain annotation for each model (and alignments):
>> VASt  VAD1 Analog of StAR-related lipid transfer domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.7   3.2e-18   1.4e-14       3     141 ..     819     975 ..     817     984 .. 0.80

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 3.2e-18
                 EEEEESS-HHHHHHHHHSS-THHHHHHHHH.TT-BS-H.HHSE..............EEEEEEEE--SS.SS-SEEEEEE........EEE..EEEEET CS
        VASt   3 veevlpisvkalfellfgdkseflkkfleerqkttdisvgpweeake.....kgkltRklsytkplkgs.igpkqtkvte........tqtilveeddl 87 
                 +++++ i++k l ++lfgd se + ++l+ ++kt++ +v +w++++e     + +l+R +++ ++ ++s i    t++++        +q++++  d++
  CCD25728.1 819 YKHEYAIPSKGLLHILFGDRSEAFPRCLFLAHKTSNKNV-NWNWKEEkvtedTTQLVRSIQFEVNKTSSfI-RNRTHTRRpeielltlKQRVIKMIDNK 915
                 7899******************99999888756555543.56444446799999***************66.455555555599999999977666666 PP

                 TEEEEEEEEE-T.TSTTTTSEEEEEEEEEEEETT.TE..........E.EEEEEEEEEESS-- CS
        VASt  88 yyivvvtttktpldvPygdsFsvetryvitwgsk.ns........kstcrltvstkvefskss 141
                  y+ ++++     +vP+++  +++ +y+it  ++ ++        k++  l+ ++k+ef+ s+
  CCD25728.1 916 -YYEIDNDPLYV-KVPFCHVLKISAKYIITNNADaDEkskgmeftKGS-LLHLFYKIEFINST 975
                 .69999999999.******************87524489*****5555.9**********865 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.1   2.2e-14   9.7e-11       2     103 ..     317     426 ..     316     428 .. 0.85
   2 ?   -1.5   0.1      0.78   3.5e+03      23      65 ..     639     677 ..     626     703 .. 0.65
   3 ?   -2.5   0.1       1.7   7.6e+03      48      82 ..     899     939 ..     850     951 .. 0.64

  Alignments for each domain:
  == domain 1  score: 42.1 bits;  conditional E-value: 2.2e-14
                 EEEEEEEEETSSSSC...SEEEEEEEEETTE..EEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSS........TEEEEEEE CS
          PH   2 vkeGwLlkkgsgkkk...swkkrwfvLkdse..llyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverng........srtyllqa 87 
                 +k+GwL+ k+   k     w +rw++L++s   l++ +++k++ +++ k  + l+n+++       d++rkfcfe+ri  ++         + ++++qa
  CCD25728.1 317 EKSGWLFMKTMVGKPsrtVWVRRWCFLTNSIfgLFLLSPSKTYVEETDKFGVLLTNVRYDP-----DEDRKFCFEVRILGNKAtegpnipkDISLVFQA 410
                 79***9988888877899**********77799888888899*****************75.....9*********7774444555455545******* PP

                 SSHHHHHHHHHHHHHH CS
          PH  88 sseeerkeWikaiqsa 103
                 +s  e+k+W+ a++s+
  CCD25728.1 411 ESLIELKSWLVAFESS 426
                 ***********99886 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.78
                 EEEETTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSS CS
          PH  23 fvLkdsellyykndksekdkepkgsislsncevvevvatedpk 65 
                 ++++ ++l+yy n+     +   + +s++++++vev++ ++++
  CCD25728.1 639 CFVTIDNLYYYMNS---MGFICLNRLSIDDIVSVEVDK-STKD 677
                 66666889999999...777777777777777777642.1222 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.7
                 EESTTEEEEEEEC..........TT.SSSSTSEEEEEESTSSSTEE CS
          PH  48 islsncevvevva..........te.dpkrkfcfelriverngsrt 82 
                 i+l +++ + ++           ++ + k +fc++l+i+      +
  CCD25728.1 899 IELLTLKQRVIKMidnkyyeidnDPlYVKVPFCHVLKIS-----AK 939
                 444444444333344444444445557788888888777.....44 PP

>> BAR_3  BAR domain of APPL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   1.3   4.7e-13   2.1e-09       2     216 ..      24     250 ..      23     264 .. 0.82
   2 ?   -2.1   0.3      0.57   2.6e+03      21      40 ..     710     729 ..     699     748 .. 0.62

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 4.7e-13
       BAR_3   2 efeeclkDSPkfResleevEaeleelekklkkllKlckrliea.gkaysaaqkqfaqsLrelkkes.....kgdeetdesLkkfsellqelenehtill 94 
                  f+++ +DSP fR+s++ ++  +e  e++l+k +  +   ++a  + + +a++++ ++L            ++ + t +    f++  +e++n   +++
  CCD25728.1  24 AFKDASLDSPSFRASVNFFQTRVELFEDWLQKTTDFYDHKYKAsFEDFQRAKETVLSQLLPSPTMLsngsvSNQTFTPTIIDGFIKDYTEVSNRLLRFI 122
                 69*********************************998777662679999999999998763333212444444445599999***********99999 PP

       BAR_3  95 dqaqrsikkpLekFrkedlkevkekkkkFdkesekleaaleknaqlskkk...keseleeadnelkatrkkfhqasldyvlqinelqerkkfeiletll 190
                  + +   ++ L++++ + ++ +++++ +F+ ++ k+++ l+ + +++ ++    ++ +++   +l +  k++  asld +++i++lq      +l++  
  CCD25728.1 123 LNEDIGHSTYLTELLSNAIEPYRNTRTNFEYYQTKYDTLLAAYQSIKVSNanvDPNSIKNDVMQLFELHKSYLAASLDLISAISVLQLSFDKFLLDATT 221
                 99999999********************************99998876541116788999999************************998888888888 PP

       BAR_3 191 sfmqaqltFfh...qGyelfkdlepfmke 216
                 s+ +  +  f+   q+ +l+  +++++++
  CCD25728.1 222 SLKENTMFSFKesgQSLDLAPSMNEYLND 250
                 88887766666333345666666666665 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.57
       BAR_3  21 EaeleelekklkkllKlckr 40 
                 E+ ++++++ l+ +lK+  +
  CCD25728.1 710 ENRVSKTKQSLETILKKFAS 729
                 55555555555555555433 PP

>> Gal_mutarotas_2  Galactose mutarotase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.16   7.3e+02      48      65 ..     344     360 ..     340     361 .. 0.83
   2 ?    9.3   0.0   0.00032       1.4      26      53 ..     912     940 ..     883     948 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.16
                      EETCEEEEEE--SSSEEE CS
  Gal_mutarotas_2  48 slsegyGvfvdnpaetwf 65 
                      + ++ +G+f+++p++t++
       CCD25728.1 344 T-NSIFGLFLLSPSKTYV 360
                      4.6779**********98 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00032
                      ---TS-HCC.CTS-SCEEEEEEEE..TCEE CS
  Gal_mutarotas_2  26 tdafgyeaessdplYgsiPfmisl..segy 53 
                       d+  ye + +dplY+ +Pf + l  s++y
       CCD25728.1 912 IDNKYYEID-NDPLYVKVPFCHVLkiSAKY 940
                      566666667.89********9988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1162  (0.0648112); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 8537.88
//
Query:       CCD25729.1  [L=806]
Description: hypothetical protein NDAI_0F04110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.7e-135  450.9  41.4   7.4e-135  449.5  41.4    1.8  1  Dsl1_N    Retrograde transport protein Dsl1 N terminal
    1.8e-75  252.9  10.1    1.8e-75  252.9  10.1    3.4  3  Dsl1_C    Retrograde transport protein Dsl1 C terminal
  ------ inclusion threshold ------
        2.1    7.0  13.0        3.7    6.2  13.0    1.5  1  COPI_C    Coatomer (COPI) alpha subunit C-terminus


Domain annotation for each model (and alignments):
>> Dsl1_N  Retrograde transport protein Dsl1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.5  41.4  1.2e-138  7.4e-135       1     353 []      10     396 ..      10     396 .. 0.99

  Alignments for each domain:
  == domain 1  score: 449.5 bits;  conditional E-value: 1.2e-138
                 XXXXXXXXXXXXXXXXXXXXXXXXX..............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      Dsl1_N   1 lsnkdellasiekdplllkekseks..............keekldleeilkketqLskeLhdlnkLktissLikefktnlellelencyysLqnlrkkl 85 
                 lsnkdel++si++d+lll++k++ +              ++++ d+++il+ketqL++eLhdl++LktissLi+efktn+el+elenc+ysLq+lrk++
  CCD25729.1  10 LSNKDELISSIKDDLLLLQNKNNITttgndaeddlnvskMDKTPDVNTILTKETQLATELHDLQQLKTISSLIMEFKTNFELFELENCFYSLQSLRKQI 108
                 68**********************99************************************************************************* PP

                 X.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      Dsl1_N  86 k......nnssllkqslrfqrsvatYvdsLhlkLiekikeilsekfWkitedsisFkkki...klgkdeveleYeefiefvksqffpdnildeesWlik 175
                        nn s+++q+++fqrsv++Y+dsLhl+Li++i+ei++ kfW+it++sisF++k+   +++  +ve++Y++fi+++k+ +fp++i+d+e+W+i+
  CCD25729.1 109 GtitinnNNPSFARQNYHFQRSVIVYIDSLHLDLISRIFEIITLKFWNITSESISFNPKLnvqTTDGLDVEIAYDSFISSIKNLYFPNDIIDSEFWIIS 207
                 999999999**************************************************99999999******************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      Dsl1_N 176 dmelgdlqekvrnkLntilkdyiklnevveklKeaifsksvkieyeeekktlklsltkseskeklkeklesfenlvdflketlseedkkillsklGnll 274
                 ++el+dl+e++rnkL+ti+kdyi+l+ v++++K+aif+++++++y+++k ++++slt+++++++l++++esf+n+++fl+etl  +d++illsklGn++
  CCD25729.1 208 NVELNDLHESIRNKLQTIFKDYINLDGVSAMIKNAIFTNNKQFKYANNKLSIISSLTSMNQTDFLTTTIESFQNIITFLNETLPLQDRNILLSKLGNTI 306
                 *************************************************************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX............XXXXXXXXXXXXXXXXX--HHHHHHHHHHHHHHHHHH CS
      Dsl1_N 275 stEllklvksnaseiledenssl.keqvlkindkLkkLsek..........kksswnydgneieeLLndkqiyknLlldklleeqikelR 353
                 +tEllk+vk n+s+il++ens+l k+q+lkin++L++++++           ++++nydg++i eLLn+++iy+nLlld++l++qik++R
  CCD25729.1 307 TTELLKFVKVNISKILNNENSNLmKDQTLKINTELITFAKHftlsssshsgLNNFKNYDGQQIIELLNNNRIYYNLLLDNSLYDQIKQMR 396
                 ***********************9*************************999*************************************9 PP

>> Dsl1_C  Retrograde transport protein Dsl1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.32   1.9e+03     121     146 ..     245     270 ..     216     300 .. 0.71
   2 ?   -3.1   3.4      0.91   5.4e+03      16     121 ..     311     423 ..     295     434 .. 0.50
   3 !  252.9  10.1   3.1e-79   1.8e-75       1     193 [.     608     804 ..     608     805 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.32
                 TT-HHHHHHHHHHHHHHHHHT--HHH CS
      Dsl1_C 121 ekeekyrelreklailakllplhlkd 146
                  ++++++ + +kl+i++ l ++   d
  CCD25729.1 245 TNNKQFKYANNKLSIISSLTSMNQTD 270
                 45566777777777777766554444 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.91
                 HHHHHHHHHHHHHHHHHHHHHTSSS---HHHHHTHHHH..HHHTHHHHHHTT...--HHHHHHH......HHHHHHTTHHHHHHTSS---HHHHHHHHH CS
      Dsl1_C  16 lalkkkivkkllqeqlqelkeneknpsWdatiesllPf..lkkeilnaleklteeedekvllkl......lkflfndvvikeilkWkiiseknsenlse 106
                 l+ +k  + k+l+++ ++l +++   + ++++  +  +  l++   + l++ ++ ++++++  l       + l+++ + ++i + +i   ++++ + +
  CCD25729.1 311 LKFVKVNISKILNNENSNLMKDQT-LKINTELITFAKHftLSSSSHSGLNNFKNYDGQQIIELLnnnriyYNLLLDNSLYDQIKQMRIKLANDTDPIWD 408
                 445555555666665555544432.22222222222211133444555666666666655432211110123344455555555666666666666777 PP

                 HHHHHHHHT--GGGT CS
      Dsl1_C 107 liklllnateidsle 121
                 +i+l  na +  sl 
  CCD25729.1 409 IIQLHHNAQDKTSLS 423
                 777777766666665 PP

  == domain 3  score: 252.9 bits;  conditional E-value: 3.1e-79
                 -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS---HHHHHTHHHHHHHTHHHHHHTT...--HHHHHHHHHHHHHTTHHHHHHTSS---HH CS
      Dsl1_C   1 lkrlkeltarlletnlalkkkivkkllqeqlqelkeneknpsWdatiesllPflkkeilnaleklteeedekvllkllkflfndvvikeilkWkiisek 99 
                 l+r++el + +let+l+lkkk v kl++ qlq lk+ne+np+W +t ++llP++k+ei+ +l+++++ ++++  l +l+fl+n ++i+ ilkW++is+k
  CCD25729.1 608 LTRIQELSYSYLETELNLKKKHVSKLVERQLQSLKRNENNPNWYITEDELLPYIKSEIIGPLQNINGIDSQERSLLFLNFLYNHCIINSILKWEMISDK 706
                 689************************************************************************************************ PP

                 HHHHHHHHHHHHHHHT--GGGT....T-HHHHHHHHHHHHHHHHHT--HHHHHHHHHTTGGGGS-HHHHHHHHHHHS---HHHHHHHHHHHHHHHH-X CS
      Dsl1_C 100 nsenlseliklllnateidsle....keekyrelreklailakllplhlkdilemfynGdfylfateeiiqWilllfadtplrrdaiddireireeal 193
                 nse ls + +++ln+t++dsle    ++++y+elrek++i++ +lplh+k+i+emfy+Gdfylf+teeii+W++llfadtp+r++aiddi+eir  al
  CCD25729.1 707 NSEHLSHFFQIILNETHVDSLEhlhsTSKNYKELREKFKIIGNFLPLHMKEIMEMFYDGDFYLFSTEEIIEWLKLLFADTPVRKNAIDDINEIRGAAL 804
                 ********************9833335789****************************************************************9886 PP

>> COPI_C  Coatomer (COPI) alpha subunit C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  13.0   0.00062       3.7      11      82 ..     448     524 ..     417     538 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.00062
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXX..XXXXXXXXXXXXXXXXXX CS
      COPI_C  11 kakasaaaveeeeeeeagagWgddedldleekkeeeededeee...eedeeeggWdv..edlelpadldaeaaasaa 82 
                 ++++++++v+ +e +e+ ++Wgd+ dl+l+ ++e+ +++  ++   ++   +++Wd+  +d+++++++++++++s++
  CCD25729.1 448 EEEETTHNVDGDEGDEDVDAWGDEIDLELDAENESLNKKPLNHgenDAASWNEAWDIgeDDININNETNTRRRSSTQ 524
                 3444555888899999********9**999854444433333333356667899**99999*****99999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1440  (0.0803168); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 5509.39
//
Query:       CCD25730.1  [L=72]
Description: hypothetical protein NDAI_0F04120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-11   43.5   0.2    3.9e-11   43.2   0.2    1.1  1  HMA       Heavy-metal-associated domain


Domain annotation for each model (and alignments):
>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.2   2.1e-15   3.9e-11       2      62 .]       8      65 ..       7      65 .. 0.94

  Alignments for each domain:
  == domain 1  score: 43.2 bits;  conditional E-value: 2.1e-15
         HMA  2 vrvsgmhCagCaakvekvLsel.pgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62
                ++v  m+C gC++++ +vL +l p+V++++++l+ +tv V+++ +    ++i+e+i+k+g++
  CCD25730.1  8 FNV-VMTCSGCSNAINRVLTKLePEVSKIDISLEDQTVDVTTSLPY---ETILEKISKTGKE 65
                667.5****************967**********************...***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      579  (0.032294); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.26s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 547.63
//
Query:       CCD25731.1  [L=170]
Description: hypothetical protein NDAI_0F04130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-10   40.3   1.9    2.4e-10   39.9   0.4    1.9  2  Yae1_N          Essential protein Yae1, N terminal
  ------ inclusion threshold ------
      0.041   14.2   1.7      0.059   13.8   1.7    1.3  1  Syntaxin_2      Syntaxin-like protein
       0.12   12.8   0.8       0.12   12.8   0.8    1.9  3  CLZ             C-terminal leucine zipper domain of cyclic nu
       0.14   12.6   0.4        1.5    9.3   0.1    2.1  2  Telomere_reg-2  Telomere length regulation protein
       0.19   11.3   1.1       0.66    9.6   1.1    1.7  1  IL11            Interleukin 11


Domain annotation for each model (and alignments):
>> Yae1_N  Essential protein Yae1, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.4   6.7e-14   2.4e-10       3      39 .]      20      56 ..      18      56 .. 0.95
   2 ?   -1.2   0.0      0.49   1.8e+03      32      39 .]     145     152 ..     143     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 6.7e-14
      Yae1_N  3 reGiaeGkeqglqeGfdeGyqeGaqlGlelGqilGvl 39
                +eG +e+ ++++ eG+++G+q+G+q+++ lGq+ G++
  CCD25731.1 20 DEGHNENLKNNYLEGKQFGLQVGFQRFVLLGQMSGFC 56
                8**********************************97 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.49
      Yae1_N  32 lGqilGvl 39 
                 +G+i+G++
  CCD25731.1 145 AGEIKGFV 152
                 79999985 PP

>> Syntaxin_2  Syntaxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.7   1.6e-05     0.059       8      67 ..      70     132 ..      66     165 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
  Syntaxin_2   8 insnvstleklvkqLgtkkd...teelreklhelieeinelikktnellkklsqldnsssdsq 67 
                 + +n+  ++ l++++g ++d    e+l + l +l ++ ++++  +n+l+kk++q + + s s 
  CCD25731.1  70 LLKNIEVIRTLIESVGMNNDeenVENLEKTLMKLKNKFRTILISVNRLMKKMDQTKSTPSPSI 132
                 5578888999999999998877789999**************************999887763 PP

>> CLZ  C-terminal leucine zipper domain of cyclic nucleotide-gated channels
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.7   6.1e+03      19      36 ..      14      32 ..       5      47 .. 0.47
   2 ?   12.8   0.8   3.3e-05      0.12      30      63 ..      90     123 ..      81     125 .. 0.91
   3 ?   -3.9   0.4         5   1.8e+04      16      28 ..     154     166 ..     154     168 .. 0.57

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.7
         CLZ 19 aakag.aeqkeleekverL 36
                + ++g +e  + + k + L
  CCD25731.1 14 FYEEGwDEGHNENLKNNYL 32
                3333334444444444444 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.3e-05
         CLZ  30 eekverLessLeaLqtrlarLlaeyessqrkLkq 63 
                 ee+ve+Le++L  L+++++ +l  ++   +k+ q
  CCD25731.1  90 EENVENLEKTLMKLKNKFRTILISVNRLMKKMDQ 123
                 99********************999999999987 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 5
         CLZ  16 Deeaakagaeqke 28 
                 De++ +a+++q++
  CCD25731.1 154 DEDVTEAKTTQDQ 166
                 6666666666554 PP

>> Telomere_reg-2  Telomere length regulation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0       0.1   3.8e+02      44      64 ..       2      22 ..       1      29 [. 0.82
   2 ?    9.3   0.1   0.00043       1.5      21      62 ..      71     113 ..      56     137 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.1
  Telomere_reg-2 44 eLataLltledkfdienfeel 64
                    +++ +Ll+le++f++e  +e 
      CCD25731.1  2 DIFDNLLNLEEQFYEEGWDEG 22
                    57889********99988775 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00043
  Telomere_reg-2  21 eaaLksaeeLirrkadevee.naveLataLltledkfdienfe 62 
                      + ++++ +Li++   + +e n+++L ++L++l++kf +  ++
      CCD25731.1  71 LKNIEVIRTLIESVGMNNDEeNVENLEKTLMKLKNKFRTILIS 113
                     456788999999777644555***************9775555 PP

>> IL11  Interleukin 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.1   0.00019      0.66      86     128 ..      88     130 ..      51     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00019
        IL11  86 vskkskhslepklgelisklkrLlkslqllmskleaprvpvvs 128
                 + +++ + le+ l +l++k + +l s+++lm+k++++++++++
  CCD25731.1  88 NDEENVENLEKTLMKLKNKFRTILISVNRLMKKMDQTKSTPSP 130
                 4567888999***************************998743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1115  (0.0621897); expected 358.6 (0.02)
Passed bias filter:                      604  (0.0336884); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 1141.16
//
Query:       CCD25732.1  [L=2256]
Description: hypothetical protein NDAI_0F04140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   4.4e-140  466.8   7.8   8.4e-140  465.9   7.8    1.5  1  DUF1744         Domain of unknown function (DUF1744)
    1.1e-77  261.5   4.6    1.1e-77  261.5   4.6    2.7  2  DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
    1.8e-13   50.0   4.4    1.1e-12   47.5   0.6    3.3  3  DNA_pol_B       DNA polymerase family B
    1.8e-08   34.3   2.1    6.6e-08   32.5   0.4    2.7  2  DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the ex
    2.5e-05   24.3   2.1    6.7e-05   22.9   0.0    2.9  2  RNase_H_2       RNase_H superfamily
  ------ inclusion threshold ------
      0.025   14.1   0.3      0.054   12.9   0.3    1.5  1  DUF2181         Uncharacterized conserved protein (DUF2181)
      0.055   13.9   0.0       0.27   11.7   0.0    2.3  1  NAPRTase_C      Nicotinate phosphoribosyltransferase C-termin
        3.8    8.1  13.9         12    6.5  13.9    1.9  1  zf-CHY          CHY zinc finger
        7.3    7.1  11.3        1.9    9.0   7.4    2.0  2  Cytochrom_c3_2  Cytochrome c3
        9.3    6.7   8.0          1    9.8   2.2    2.4  2  Cgr1            Cgr1 family


Domain annotation for each model (and alignments):
>> DUF1744  Domain of unknown function (DUF1744)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  465.9   7.8  4.7e-143  8.4e-140       1     401 []    1559    1949 ..    1559    1949 .. 0.97

  Alignments for each domain:
  == domain 1  score: 465.9 bits;  conditional E-value: 4.7e-143
     DUF1744    1 leklykeelekkeekeekkeelieypeklkfeveyvkdekkalkalsralkklkeeksgptllvlqspkelkkleskipalsefPvvklpsnkaess 97  
                  le++y+e+++k+++k +k ++l++++e+++f++ey++d +k+++++s +++klkeek +++ll+lqsp++ kk++++i++l+++Pvvkl+ n  e +
  CCD25732.1 1559 LEQTYRESYHKRSNKIKKFTHLVDVKEDVEFNFEYFTDISKLYRKISINMNKLKEEKGQQFLLLLQSPYS-KKMMKSIQFLNQVPVVKLALN--ELN 1652
                  5899*****************************************************************9.*********************..9** PP

     DUF1744   98 lpalgWqsvvakrlvehylklgswlaelielaryadvPlgnlesddllfliDiffaRrLkksnvvLWwse.sprPDlGGlekDdklealslleeles 193 
                  lp+l+Wq+ ++k+lv+h+l++gsw+++liela+y+++P+gnl+ d+++f+iD+++aR+Lk++ +++Ww+e  p+PD+GG+ek+ +l++++l+++++ 
  CCD25732.1 1653 LPQLNWQNGLIKKLVSHLLSCGSWVSHLIELAKYSNIPIGNLNLDTMNFIIDVLYARKLKQEGIIMWWNEnVPLPDHGGTEKEFDLNTSWLMNDSSY 1749
                  *********************************************************************978************************* PP

     DUF1744  194 peinnpgaYssvcveleirnLavntilqsalinelEgssssvafddasseeldeyekgeaessssldesalssaafrvLrslvkswlddalkgnkla 290 
                  +e+nnp++Y+++++e+ei+nL+vnt+l salin++Egs+       a+ + ld ++  +++ ss + e+++s aa++vLr+++k+w+d al++n++a
  CCD25732.1 1750 IEMNNPNVYDNAVLEIEISNLTVNTVLGSALINDAEGSDL------ADINVLDGNT--NNGGSSAFVEDSFSGAALTVLRNMLKEWWDLALQDNSVA 1838
                  **************************************86......4444556555..5788999******************************** PP

     DUF1744  291 dllvqhlvrWvespsslLyDpaLrrlvqnlmkKvflqLlaefkrlgskvvyAdfnkillkTsKksvenayaYveyilkairskelFkflelkikkyW 387 
                  d+lv+++v W ++p+++L+D +Lr+++qnl+kK++lqL++ef++lgs+vv+Ad+nk+l+kT+K s en+yaY++y++k+ir++++F +l+lki++yW
  CCD25732.1 1839 DILVNSFVGWTQNPTCKLFDGSLRYHIQNLTKKSLLQLINEFNTLGSNVVFADRNKLLIKTTKFSPENCYAYSQYMIKSIRTNPMFGYLDLKITRYW 1935
                  ************************************************************************************************* PP

     DUF1744  388 dlLlwmDeaNygGv 401 
                  d+Llwm+++N++G+
  CCD25732.1 1936 DILLWMNQYNFSGI 1949
                  *************6 PP

>> DNA_pol_B_exo1  DNA polymerase family B, exonuclease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.5   4.6   6.1e-81   1.1e-77       3     337 .]     146     472 ..     144     472 .. 0.96
   2 ?   -3.6   0.1       2.6   4.7e+03      70     111 ..    1427    1470 ..    1380    1471 .. 0.63

  Alignments for each domain:
  == domain 1  score: 261.5 bits;  conditional E-value: 6.1e-81
                     CTTSEEEEEEEE---EEEEEESSCGGHHHHHHHHHHHCCTTCCCEEEEEEEECCCCEECCTSSCCHHCEEEEEESSTCHHHHHHHHHHH...... CS
  DNA_pol_B_exo1   3 eegksvcvnvfgfkpyfYceapdgkeleevkeelkelyeelskkvtkivkvelvlkkslygyekkpvpylkvsvsnpnelkkirkelsp...... 91 
                     +e++ +++   +++pyf++++ d++  ++v+e lk++ e++ k ++ + k +l++ ++l+ ++k+   ++k+++ n+n+l+++rk l+p      
      CCD25732.1 146 DEEGGSFKTSINYDPYFFVSCTDDSMVNDVEEFLKKYLESCLKGIHILQKDDLAMDNHLIWLKKT---LIKLEFVNSNQLFEARKLLRPiladnk 237
                     6788899999************************************9******************...*******************99****** PP

                     ............................CCCCCCCCSSS--HHHHHHHHCTS-TTCEEEEETEEEEGCC--C-.SEEEEEETTTSCEETTTCC.. CS
  DNA_pol_B_exo1  92 ............................leeivdvyeydvdylerflidnkivgfgwysvkkylvraegkisncdveidcdvddliakpkese.. 156
                                                 ++ i+d++eydv+y++r++id++i+ ++wy+v      a g+i n+        ++           
      CCD25732.1 238 knklqrniynnnnavssnnnnndtivdaKQFIEDIREYDVPYHVRVSIDKDIRIGKWYKVT-----AGGFIENT--------EK--------Vaf 311
                     ****************************9999*****************************.....66666662........22........234 PP

                     S-EEEEEEEEEETEETTSEETTTT..--EEEEEEEECCTC.SS.SEEEEEEECCCTSS----EE--SSTCSTTE.EEEEESSHHHHHHHHHHHHH CS
  DNA_pol_B_exo1 157 pplrvlsFDIeckskkgkfpdaensedpiiqIscvldglgekepearklftlrecaseeeedfeltpkpeypgv.kvlefdsEkelLqaflefik 250
                     ++++vl+FDIe+++ ++kfpd+    d++++Is+++dg+g       +l+t+re+ se++edfe+tp+pey+g  +++++d+Ek+lL++f+e+i+
      CCD25732.1 312 ADPVVLAFDIETTKAPLKFPDSAV--DQVMMISYMIDGEG-------FLITNREIISEDIEDFEYTPRPEYEGQfTIFNEDDEKALLERFFEHIR 397
                     9***********************..**************.......************************************************ PP

                     HH--SEEEESSTTTTHHHHHHHHHHHCCTCCHCG.SCCSCTCEECCCCESEEEEEECEEEETTSEEEEHHHHHHHHSSSS..G-SHHHH CS
  DNA_pol_B_exo1 251 qydPdvitgYNidnFDlpYilnRakelykvklsklgrlnkggrskvseigfskqarekvkisgrihlDlyrvvkrklklp..sYkLnav 337
                     +++P+vi ++N+d+FD+p++++Rak               +g+ + +eigf+ ++++++k+s+++h+D++r+vkr+++lp  s+ L+av
      CCD25732.1 398 EVRPTVISTFNGDFFDWPFVETRAK--------------IHGLDMFDEIGFAPDSEGEYKSSYCSHMDCFRWVKRDSYLPqgSQGLKAV 472
                     *************************..............************************************************98 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 2.6
                      CEEEEEESSTCHHHHHHHHHHH..CCCCCCCCSSS--HHHHHHH CS
  DNA_pol_B_exo1   70 pylkvsvsnpnelkkirkelsp..leeivdvyeydvdylerfli 111 
                       ++k++v+  + l ++ +  s    e++  ++e++++   r +i
      CCD25732.1 1427 TLYKLTVPEGTYLEELEDSSSIlnDENVLGIFESNIPSNQRAII 1470
                      27788887777777776654324478999999999998777665 PP

>> DNA_pol_B  DNA polymerase family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.068   1.2e+02      61      88 ..     666     693 ..     664     736 .. 0.84
   2 !   47.5   0.6     6e-16   1.1e-12     145     416 ..     839    1146 ..     806    1190 .. 0.69
   3 ?   -2.3   0.1      0.73   1.3e+03     211     296 ..    1873    1958 ..    1861    1963 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.068
                 EEEEEETTHHHHHHHHTT-STTTCE-HC CS
   DNA_pol_B  61 vlvlDFaSLYPsiiqahNlcyttlvase 88 
                 +  +D aS+YP+i+  + l +  + +++
  CCD25732.1 666 IYHVDVASMYPNIMTTNRLQPDSIKTER 693
                 56789*********99888877766665 PP

  == domain 2  score: 47.5 bits;  conditional E-value: 6e-16
                  -HHHHHHHHHHHHHHHHHHHHHHHHHTSTTSTT--HHHHHHHHHHHHHHHHHHHHHHHHT...SSGGGT-SS.....T-EEEEEBSSEEEEE-.... CS
   DNA_pol_B  145 defekalldkqQlalKvtaNsvYGftGvansrlpclalAasvTtiGRemLektkelvekkaellskllalpeeaeeeklkviYGDTDSvfiel.... 237 
                  ++++ +l+d+ Qla Kv+ Ns+YG++  + sr +++++A     +G ++++++++lve+ ++ l+                   DTD ++  l    
  CCD25732.1  839 KQKMIVLYDSLQLAHKVILNSFYGYVMRKGSRWYSMEMAGITCLTGATIIQMARSLVERVGRPLEL------------------DTDGIWCILpssf 917 
                  3347899***************************************************87332222..................3444433333344 PP

                  ............................S-SSHHHHHHHHHHHHHHHHT.TSTTT--EEEEEEEEEEEEEE........TTEEEEEEEEESSTTSE. CS
   DNA_pol_B  238 ............................kvkdveellkigkelaeevseklfkkplklefekvykkllLis........KKkYaglkvektskank. 297 
                                              +  + ++  ++ + ++++ ++   ++ +  e++  yk ++L +        KK+Ya +  +     +  
  CCD25732.1  918 penyfftlqngkklfmsypcsmlnyrvhQQFTNHQYQTLVDPVKHRYET-HSENSIFFEVDGPYKAMILPTskeegkgiKKRYAVFNED-----GTl 1008
                  4444444444444444446677777776678999***************.55666**************75444454557777765555.....333 PP

                  EEEESSGGGSTTS-HHHHHHHHHHHHHHSSS....S-HHHHHHHHHHHHHHHHHHHHTT-S-GGG......G-EEEEESS.CCCSSGCCSHHHHHHH CS
   DNA_pol_B  298 lliKGvdlvRrdncklvkevikkvlelllkdeteersleeglealksilkdvleeleenkvplek......fvlskelskepenyksknlphlevak 388 
                   + KG +l Rr+  +l+k+  +++ +  l      +sle++ +a+ s+ ++ l+ l ++ + +e+       + +k++sk+ ++y+ ++   ++ ak
  CCD25732.1 1009 AELKGFELKRRGELQLIKNFQSDIFKVFLDG----NSLESCYAAVASVANRWLDVLDTKGAMVEDedlialICENKSMSKSLKEYEGQKSTSITTAK 1101
                  79*************************9999....8888888888877777666665554433321211115668999*******999999999999 PP

                  HHHHHCSS-..--TTCEEEEEEBETSS.................. CS
   DNA_pol_B  389 rlkkrneea..pevgdrisYvivekkkev...............k 416 
                  rl +  +e      g + +Y+i  k  ++               +
  CCD25732.1 1102 RLGEFLGEDmvKDKGLQCKYIISTKPFNApvteraipvaifstdI 1146
                  998766443113344566777766654335666666666555541 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 0.73
                  GGT-SS.....T-EEEEEBSSEEEEE-S-SSHHHHHHHHHHHHHHHHT.TSTTT--EEEEEEEEEEEEEETTEEEEEEEEESSTTS CS
   DNA_pol_B  211 llalpeeaeeeklkviYGDTDSvfielkvkdveellkigkelaeevseklfkkplklefekvykkllLisKKkYaglkvektskan 296 
                  ll+l +e+++ + +v++ D   + i++   + e++++  + + + ++++ ++ +l l++   +  ll ++   + g+++++ ++++
  CCD25732.1 1873 LLQLINEFNTLGSNVVFADRNKLLIKTTKFSPENCYAYSQYMIKSIRTNPMFGYLDLKITRYWDILLWMNQYNFSGIACSEIEEKE 1958
                  455555556668899999*****************************************999999999999999999888666655 PP

>> DNA_pol_B_exo2  Predicted 3'-5' exonuclease related to the exonuclease domain of PolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1       5.8     1e+04     163     206 ..     199     243 ..     179     248 .. 0.68
   2 !   32.5   0.4   3.7e-11   6.6e-08      34     175 ..     382     520 ..     375     521 .. 0.78

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 5.8
  DNA_pol_B_exo2 163 vlnTYlvylrlellrgkl.seeeyaeeiaqvrellekekeekehl 206
                     +++ +l++l+ +l++ ++ ++++  e  + +r +l ++k++k + 
      CCD25732.1 199 AMDNHLIWLKKTLIKLEFvNSNQLFEARKLLRPILADNKKNKLQR 243
                     578899999999999776245566677777888887777666555 PP

  == domain 2  score: 32.5 bits;  conditional E-value: 3.7e-11
  DNA_pol_B_exo2  34 essekelikkffegvekkkpqlVs.fngrgfDlpvleyralkhgvsapkyfdegdedrekkwnnylsrystrhlDLmdlls..eygaranakLde 125
                     e++ek+l+++ffe++++ +p+++s fng  fD p +e ra +hg+ +   +        +   +y s y   h+D    +   +y ++ ++ L+ 
      CCD25732.1 382 EDDEKALLERFFEHIREVRPTVIStFNGDFFDWPFVETRAKIHGLDMFDEIGFAP----DSEGEYKSSYC-SHMDCFRWVKrdSYLPQGSQGLKA 471
                     689******************9966*******************98643332222....23345666664.488888887533688999999998 PP

  DNA_pol_B_exo2 126 lakl.lg.lPGKlgvdGskVaelyqegklkeireYcetDvlnTYlvylrlel 175
                     +++  lg  P  +++d  + ++ y+ +k ++++eY  +D+++TY +y+++++
      CCD25732.1 472 VTQAkLGyNP--IELD-PELMTPYAYEKPQHLSEYSVSDAVSTYYLYMKYVH 520
                     8765133034..4444.468999**************************975 PP

>> RNase_H_2  RNase_H superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   3.7e-08   6.7e-05      40     119 ..     381     482 ..     369     517 .. 0.74
   2 ?   -3.1   0.7       3.7   6.6e+03      38      86 ..    1564    1614 ..    1549    1636 .. 0.49

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 3.7e-08
   RNase_H_2  40 epeeekail.elflellekk.kalvtfngksFDvpflkrlfkkyklde................eefrhiDLlkelrkkkl...esysLksveke.lgi 116
                 ++++eka+l ++f ++ e + + + tfng  FD+pf+++++k + ld                     h+D ++++++  +    s +Lk+v ++ lg+
  CCD25732.1 381 NEDDEKALLeRFFEHIREVRpTVISTFNGDFFDWPFVETRAKIHGLDMfdeigfapdsegeyksSYCSHMDCFRWVKRDSYlpqGSQGLKAVTQAkLGY 479
                 4455555550555444333337799****************55556656668888888888876777*********999999*9555*****9988999 PP

   RNase_H_2 117 err 119
                 +  
  CCD25732.1 480 NPI 482
                 874 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 3.7
   RNase_H_2   38 aeepeeekailelflellekkkalvtfngksF.Dvpflkrlfkkyklde...e 86  
                  +e  +++++  + f ++l + k+ v fn++ F D++ l r++  +++++   e
  CCD25732.1 1564 RESYHKRSNKIKKF-THLVDVKEDVEFNFEYFtDISKLYRKI-SINMNKlkeE 1614
                  33333333333334.456666666777777743344444444.3333334331 PP

>> DUF2181  Uncharacterized conserved protein (DUF2181)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3     3e-05     0.054      72     135 ..     208     274 ..     171     284 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3e-05
     DUF2181  72 kkkgikLDfksieavepsldlLk...ekkeenklkrpvwlnAdilkGpnsastipvdaseFLklvke 135
                 kk+ ikL+f + + + ++ +lL+   + +++nkl+r ++ n + +++ n+++ + vda++F++ ++e
  CCD25732.1 208 KKTLIKLEFVNSNQLFEARKLLRpilADNKKNKLQRNIYNNNNAVSSNNNNNDTIVDAKQFIEDIRE 274
                 44679****887777666555542226788889*******************999********9987 PP

>> NAPRTase_C  Nicotinate phosphoribosyltransferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015      0.27      66     104 ..     634     672 ..     598     678 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00015
  NAPRTase_C  66 vyelpsleeireyvkeqlaelrpehkRllnPtpYkVsls 104
                 + e+ +++ei+  + e+l  l++ +kR + P +Y+V++ 
  CCD25732.1 634 MNEVTNFDEIKTKITEKLLDLKENTKRNELPLIYHVDVA 672
                 467999******************************986 PP

>> zf-CHY  CHY zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  13.9    0.0065        12      15      73 ..    2157    2214 ..    2142    2216 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0065
      zf-CHY   15 cCkklyaCreCHeeledhelerlevkevlcllCeteqekavlCkkCkkefaeyfCpiCk 73  
                    ++l++C++CH+e ++  l+++ ++++  ++ et  ++   C++C+k  ++y+  +C+
  CCD25732.1 2157 DSETLFNCKNCHREFNKLLLQEHLIEKF-YSTIETYVTQDLSCSRCHKIKQDYMSMHCD 2214
                  46789*******9999888888888887.6667777789999******99***999997 PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1        10   1.8e+04      56      64 ..     690     698 ..     680     701 .. 0.57
   2 ?    9.0   7.4    0.0011       1.9       7      74 ..    2140    2211 ..    2137    2216 .. 0.67

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 10
                     TSSS-GGGT CS
  Cytochrom_c3_2  56 ekeleCteC 64 
                     ++e +C++C
      CCD25732.1 690 KTERDCASC 698
                     444445555 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0011
                      .TGGGTSSSST..-SSTTHHHHHHHHHHH--HHHCHTTSST.TSSBTTSSC..TSSS-GGGTS-TTTSBT-G CS
  Cytochrom_c3_2    7 vkCadCHtkek..pkkdkaveeekClsCHgkleelakktkeakeanphksh..ekeleCteCHkeHkksekv 74  
                      + C+ C   ++  + k+++ +  +C++CH + ++l  +++  ++   + +   +++l+C++CHk  ++ +++
      CCD25732.1 2140 FLCEYCSYISDldFCKADSETLFNCKNCHREFNKLLLQEHLIEKFYSTIETyvTQDLSCSRCHKIKQDYMSM 2211
                      567777764432244455566778********999888887766554443313699********98876644 PP

>> Cgr1  Cgr1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.3       4.2   7.5e+03      26      49 ..     765     788 ..     741     797 .. 0.65
   2 ?    9.8   2.2   0.00056         1       6      86 ..    1204    1282 ..    1201    1286 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 4.2
        Cgr1  26 kkkkkkswekrqekrkkakaiKkl 49 
                  kk+ ++++k++ +r+k ++i ++
  CCD25732.1 765 IKKRLTEYSKKNYHRTKVSEIVER 788
                 235667777777777776666555 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00056
        Cgr1    6 vsGksWkteKkafrsksskkkkkkkkswekrqekrkkakaiKklekeLkdekeaerqrrieaikerrkakeEkeRleelaa 86  
                  v    W ++K a+++ + k+++   +++  ++ ++ ka +iK+ e   k+  ++++  +i++ +   k k+ k+R ++ +a
  CCD25732.1 1204 VEHPDWLKKKIAIKEDKFKQTS--LSRFLSKTTDTPKAGKIKDIEDLFKNSDDENEGGHIKIARSTSKHKNGKRRRDQKEA 1282
                  6667899***9**999998855..**************************************************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       967  (0.053935); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 1.15u 0.33s 00:00:01.48 Elapsed: 00:00:00.50
# Mc/sec: 13517.01
//
Query:       CCD25733.1  [L=330]
Description: hypothetical protein NDAI_0F04150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-77  259.2   5.3    4.2e-77  258.9   5.3    1.1  1  YIF1      YIF1
  ------ inclusion threshold ------
       0.02   14.6   8.4      0.047   13.4   8.4    1.7  1  Yip1      Yip1 domain
      0.098   10.8   0.1       0.13   10.3   0.1    1.1  1  Mon2_C    C-terminal region of Mon2 protein


Domain annotation for each model (and alignments):
>> YIF1  YIF1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  258.9   5.3     7e-81   4.2e-77       1     238 [.      61     329 ..      61     330 .] 0.94

  Alignments for each domain:
  == domain 1  score: 258.9 bits;  conditional E-value: 7e-81
        YIF1   1 ndpaaqmalqlGqsalsq..gqeyveknlnryvs.vsa.........lkyyFnVsnsYVlkKlllllfPflh.ksWsrkseqseesse........... 75 
                 +dp+++ma+qlGqsa+s+  gqe    n+n++++ vs+         l++yF+Vs+sYVl+Kl+ +lfP+l+ ++W+r  +++++ +            
  CCD25733.1  61 QDPRSSMAFQLGQSAFSNfiGQE----NFNQFQEtVSKvsnngsttyLSHYFQVSTSYVLQKLKQILFPYLNkNNWQRIPDSQSKMNGgngnpnaptmn 155
                 6999*************966666....999999976668889******************************889*****9888877699********* PP

        YIF1  76 ......ylppredvnapDLYiPlmalvtYillaglllGlqgkFspelLgikassalavvllevlilklglYll.niss.asslldlvaysgYkfvgviv 166
                       +++p++d n+pDLYiP+m+l+tYil++++++Glqg+F+pe L++k+ss+l ++ l+++ilklglYll +++s  +sl++l++++gYkfv++++
  CCD25733.1 156 gpssfqFMSPKDDSNCPDLYIPIMGLITYILIWNTQQGLQGSFNPEDLYYKLSSILGFMGLDLFILKLGLYLLvSTHSpVTSLVELTCFVGYKFVPLTL 254
                 *************************************************************************66664499****************** PP

        YIF1 167 tlllklllgeglvyylvllylvlalafFllrsLklvllpeas...etvkksqrkkrkqflflvaavlQlllmllL 238
                 +l++ +   + +v ++++ yl+la+++Fllrs+k++l+++++    ++kks+ kk+++flf++ +++Q++lm+l+
  CCD25733.1 255 SLFIPTSKIPWYVPIFFKSYLFLAFGVFLLRSVKFNLFSNPNddmINIKKSTVKKCNYFLFFYGFLWQTVLMWLM 329
                 ***********9******************************665449*************************98 PP

>> Yip1  Yip1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   8.4   7.8e-06     0.047      18     128 ..     168     283 ..     132     330 .] 0.71

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.8e-06
        Yip1  18 ilrapdlallllalltlllgllaslnlgqtlasgeevqgltlssllgaiiggylglllgllllalllhliakllggkgsfkqtlsvvgyallPlilgal 116
                  ++ pdl+++++ l+t++l++ + + l++ + ++        + +  + i+g+ g  l l++l l l+l++ +    +s+ ++ ++vgy ++Pl l+++
  CCD25733.1 168 DSNCPDLYIPIMGLITYILIWNTQQGLQGSFNPE-------DLYYKLSSILGFMG--LDLFILKLGLYLLVSTHSPVTSLVELTCFVGYKFVPLTLSLF 257
                 45569*******************8888888888.......55555555555555..5555555555555555589999*******************9 PP

        Yip1 117 iaillllllgt..............l 128
                 i    ++++ +              l
  CCD25733.1 258 IPTSKIPWYVPiffksylflafgvfL 283
                 96655555555555554444444330 PP

>> Mon2_C  C-terminal region of Mon2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   2.2e-05      0.13     260     363 ..     102     211 ..      83     220 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 2.2e-05
      Mon2_C 260 eiltrlksiekqistdrledlelffiawniwlsigsestklsttkaqpq.psitggsngs.....qdsd.kdtyipsqafltaliqifpalyqhikvkf 351
                   l+++ ++   ++ ++l+++ + ++  n w +i    +k++  + +p+ p+++g s+       +ds+  d+yip   ++t  i i+    q ++ +f
  CCD25733.1 102 TYLSHYFQVSTSYVLQKLKQILFPYLNKNNWQRIPDSQSKMNGGNGNPNaPTMNGPSSFQfmspkDDSNcPDLYIPIMGLITY-ILIWN-TQQGLQGSF 198
                 456677778888899999999999********************99997366676665331111133332489***9998885.55665.5799***** PP

      Mon2_C 352 smddl.dklgvvl 363
                 +++dl  kl+ +l
  CCD25733.1 199 NPEDLyYKLSSIL 211
                 ****835888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2297.76
//
Query:       CCD25734.1  [L=359]
Description: hypothetical protein NDAI_0F04160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-40  136.5   0.0    9.9e-40  135.9   0.0    1.3  1  CRAL_TRIO    CRAL/TRIO domain
    1.4e-17   63.6   0.0    2.7e-17   62.7   0.0    1.5  1  CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
     0.0014   18.8   0.0     0.0024   18.0   0.0    1.4  1  CRAL_TRIO_2  Divergent CRAL/TRIO domain


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.9   0.0   1.7e-43   9.9e-40       2     158 ..     149     298 ..     148     299 .. 0.96

  Alignments for each domain:
  == domain 1  score: 135.9 bits;  conditional E-value: 1.7e-43
   CRAL_TRIO   2 eileggkvgihgrDkegrpvlylrlgrfdpkklsleelvralvlvlerllkeleedgqvegvtvviDlkgls..lskmlwkp.isllkkilkilqdnyp 97 
                 +++e+gk +++g+D+ +rp++y++ gr++++++   ++v+ l++++e+++ ++++  +ve++tv++D+k ++      ++ p is+++ +l+++q++yp
  CCD25734.1 149 VENETGKEFLLGFDNAKRPLFYMKNGRQNTEPSF--RQVQQLIFMMEAAVSLTPQ--GVEKITVLVDFKAYKepGIITDKAPpISIARACLNVMQNHYP 243
                 6899***************************999..**************99999..***************99666788899**************** PP

   CRAL_TRIO  98 erlgkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGG 158
                 erl k++++n+P+++++++kl++pfld++t+eK  f +p      +e++i+p+ql++ + G
  CCD25734.1 244 ERLAKCVLINIPWFAWAFLKLMYPFLDPATKEKAIFDEP------FENHIEPSQLEAMYNG 298
                 *************************************99......**************99 PP

>> CRAL_TRIO_N  CRAL/TRIO, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   4.5e-21   2.7e-17       2      54 .]      49     122 ..      48     122 .. 0.98

  Alignments for each domain:
  == domain 1  score: 62.7 bits;  conditional E-value: 4.5e-21
  CRAL_TRIO_N   2 ydellahlqeseyk..........................lteeekfWltredhddaclLRfLRArkwdvekAikrLed 54 
                  y ++l+h+q++ +k                          l ++ekfWl+re     c+LR+LRA+kw+   Aik L++
   CCD25734.1  49 YRQVLKHFQDENLKlplntndlnnnstadsttsssiglkpLGPWEKFWLSRE-----CILRYLRATKWNPTHAIKNLTE 122
                  89**************************************************.....*******************985 PP

>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     4e-07    0.0024      13     106 ..     179     277 ..     165     303 .. 0.80

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4e-07
  CRAL_TRIO_2  13 lsskadldkllryvlhtladkivgke.yvlVyfhtglss.....enkpslswlkkvystlprrykknlkklyivhpstfvktllktvlsafvsskfrk 104
                   +s  + ++l++++   ++ + +g e ++++++ +  ++      + p +s +++++++++++y+++l k  +++  +f  ++l  ++ +f+ +  ++
   CCD25734.1 179 EPSFRQVQQLIFMMEAAVSLTPQGVEkITVLVDFKAYKEpgiitDKAPPISIARACLNVMQNHYPERLAKCVLINIPWFAWAFL-KLMYPFLDPATKE 275
                  4555678888888888888787777789999999998889999999**************************************.8888888888877 PP

  CRAL_TRIO_2 105 kv 106
                  k 
   CCD25734.1 276 KA 277
                  63 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       328  (0.0182944); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2667.89
//
Query:       CCD25735.1  [L=296]
Description: hypothetical protein NDAI_0F04170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-53  179.5   3.4    4.5e-53  179.5   3.4    1.6  2  Ist1            Regulator of Vps4 activity in the MVB pathway
  ------ inclusion threshold ------
        1.9    8.9   8.5        4.5    7.7   8.5    1.7  1  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> Ist1  Regulator of Vps4 activity in the MVB pathway
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.5   3.4   5.1e-57   4.5e-53       1     164 []      13     183 ..      13     183 .. 0.98
   2 ?   -1.7   0.1      0.27   2.4e+03      92     112 ..     271     291 ..     251     293 .. 0.63

  Alignments for each domain:
  == domain 1  score: 179.5 bits;  conditional E-value: 5.1e-57
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT--S........SSSSHHHHHHH CS
        Ist1   1 KtqlklaiqrlkllqkkkealakqarrdiaqlLengkeekArirveqliredillelleilelycelllarlsllekqke........ldeelkEAvss 91 
                 Kt+lk++iqrl+++q+k++alakq rr +a+lL+++ke+kA++rve+li++di++elleilelycell+ar+++l++ ++        ++++++EAv++
  CCD25735.1  13 KTCLKMCIQRLRYAQEKQQALAKQDRRLVAKLLSDSKETKAQYRVENLINNDIHMELLEILELYCELLHARVNILNDITDevdlisnhIEDGINEAVRA 111
                 9****************************************************************************888899**************** PP

                 HHHHHHH-TTTTTHHHHHHHHHTTS-HHHHHHHHTT-T.T--HHHHHHHS-----HHHHHHHHHHHHHHHT-S CS
        Ist1  92 liyAaprvselkELkelrdllaekyGkefakaavenkdngVnekvvkklsvktpskelvekylkeIAkeynve 164
                 +++++ +v+e+kEL+++ +ll+ k+G+ef k ++e++  gV+ekv+ k+s++ p+++lv  ylkeIA +y+v+
  CCD25735.1 112 IVFSTLYVPEVKELNQMAELLTLKFGQEFLKVIREDHV-GVPEKVLGKCSPALPKEDLVILYLKEIAITYDVP 183
                 *****************************999999987.9******************************996 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.27
                 HHHHHHH-TTTTTHHHHHHHH CS
        Ist1  92 liyAaprvselkELkelrdll 112
                 +++  ++v++  EL el++ +
  CCD25735.1 271 IVHNKKKVEKTDELDELKKRF 291
                 666667777777777777666 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   8.5    0.0005       4.5      13      42 ..     189     218 ..     185     238 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0005
  CENP-B_dimeris  13 esesdeeeeeeeedeededeeddedddevp 42 
                     +ses+ e + +++++ d+d++dd d+ +v 
      CCD25735.1 189 DSESESETQSNDNEKTDDDNNDDGDGGNVK 218
                     677777777777888888899999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1693  (0.094428); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2069.46
//
Query:       CCD25736.1  [L=1079]
Description: hypothetical protein NDAI_0F04180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-34  117.6   1.5    2.6e-33  115.9   0.0    2.5  2  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    6.1e-19   67.7   0.8    4.2e-18   65.1   0.1    2.6  2  Pik1            Yeast phosphatidylinositol-4-OH kinase Pik1
    1.7e-05   24.3   0.6    4.7e-05   22.9   0.6    1.7  1  PI3Ka           Phosphoinositide 3-kinase family, accessory d
     0.0021   18.1   1.1       0.01   16.0   1.1    2.2  1  DUF148          Domain of unknown function DUF148
  ------ inclusion threshold ------
       0.03   13.7   0.0       0.06   12.7   0.0    1.5  1  DUF4135         Domain of unknown function (DUF4135)
       0.52   10.5   3.9        1.5    9.0   3.9    1.8  1  DUF4949         Domain of unknown function (DUF4949)


Domain annotation for each model (and alignments):
>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.4      0.86   2.6e+03      77     129 ..     192     247 ..     147     353 .. 0.64
   2 !  115.9   0.0   8.8e-37   2.6e-33       3     245 ..     805    1019 ..     804    1023 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.86
                     C..TTSTCHHHHH.HHHHCHCHCCHHHHHCCHHHHHHTSSTTHHHHHHHHHSSSHH CS
  PI3_PI4_kinase  77 k..gvpptasves.lrvaldkkklkkekklkfekrtalkpksgllqeFvkkspsae 129
                        +v+++a  ++ ++++l+++  ++ ++ + + rt  k k +  + F++ s+s++
      CCD25736.1 192 YvfKVARNAIKDFtRNITLKNTGRNRSSSSEHSTRTRTKNKTQTENTFIRPSSSVD 247
                     25555555555555444555555455555446666666666666666666665554 PP

  == domain 2  score: 115.9 bits;  conditional E-value: 8.8e-37
                      EEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHHHHCTTSTCHHHHHHHHHCHCH CS
  PI3_PI4_kinase    3 agiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldeklekkgvpptasveslrvaldkk 95  
                      ++i k gddlrq+   +q+++ m +++ ke+   +    +k ++++ ++   g++e + ++ +++s+ +   +k  + ++ +++         
      CCD25736.1  805 SVIAKSGDDLRQEAFACQMIQAMAQIWAKEKVNVW----VKKMKILITSATTGLVETITNAVSVHSIKKSLTKK--MVSDGELDE-------- 883 
                      68999******************************....****************************9997754..444444444........ PP

                      CCHHHHHCCHHHHHHTSSTTHHHHHHHHHSSSHH..HHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHCS CS
  PI3_PI4_kinase   96 klkkekklkfekrtalkpksgllqeFvkkspsae..ewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewkl 186 
                                     ++    l+++ v+ + +++  ++ +a ++F++sla +sv+ y+l++ DRh++Ni++ + +g+++hIDfG++l +++  
      CCD25736.1  884 ---------------KTGIATLKDHYVRAFGDPNgfKFKRAQDNFASSLAAYSVICYLLQVKDRHNGNIMI-DNEGHVVHIDFGFMLSNSPGS 960 
                      ...............23347899999999999973366667******************************.9******************** PP

                      SSS-.SSSSSS-THHHHHHT..STTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHC CS
  PI3_PI4_kinase  187 lpfpqekvPfrltrelvlai..dpskdeglfresceealealrrdqnlltrllkkavkdgl 245 
                       +f+    Pf+lt e+v+++   + + +++f +s   a++alr+ ++ ++++ +++ kd++
      CCD25736.1  961 VGFE--AAPFKLTYEYVELLggVEGAPYKKFVNSTKAAYRALRKYSDQIVSMCEIMQKDNM 1019
                      **95..99************8777889****************************999876 PP

>> Pik1  Yeast phosphatidylinositol-4-OH kinase Pik1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.1   1.4e-21   4.2e-18       1      51 []     119     170 ..     119     170 .. 0.96
   2 ?   -0.2   0.0      0.33   9.9e+02       1      11 [.     191     201 ..     191     223 .. 0.90

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 1.4e-21
                 --TTHHHHHHHHHHT--SS-SS..----TT--SS-SHHHHHHHHHHHHHT-- CS
        Pik1   1 SygFqvcrrvlNklQfilFnlsa.seqkkkkkfrENvsPalvLssavlssiA 51 
                 SygFqv+rrvlN+lQ  lFn++  ++  k +k++EN++Palv  s+++ssiA
  CCD25736.1 119 SYGFQVARRVLNNLQASLFNTTItEDDVKPTKMHENIAPALVSVSMMMSSIA 170
                 9********************997788899*********************9 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.33
                 --TTHHHHHHH CS
        Pik1   1 SygFqvcrrvl 11 
                 Sy F+v+r+ +
  CCD25736.1 191 SYVFKVARNAI 201
                 899*****977 PP

>> PI3Ka  Phosphoinositide 3-kinase family, accessory domain (PIK domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.6   1.6e-08   4.7e-05      78     156 ..      32     110 ..      14     136 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.6e-08
                 HHHTTTTSTTS--HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHGGSSSSSSHHHHHHHHHHHHSHHHHHHHHHHHHHHH CS
       PI3Ka  78 ddaLeLLdskfkdesvreyavkvLekasdeelllYllQLVqalkyepikdsalaefLlkralknkrlghfffWyLksei 156
                  + +eLL    ++  +  y  ++L ++   el++Y++QLVq+l   + +  al+ +++k  ++n+ ++   fW L++ +
  CCD25736.1  32 YNCIELLCRCSNNIGIHYYLCQRLLTFPHAELQFYIPQLVQILLTIETESMALEDLIMKLKNENPHFALLTFWQLQALL 110
                 6678888888888999**************************987779999***********************99755 PP

>> DUF148  Domain of unknown function DUF148
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.1   3.3e-06      0.01       5      68 ..     682     746 ..     679     749 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.3e-06
      DUF148   5 effaIlknenltiaeieeqleawaekygvtd.eykefeakvkaqkeevkknvtavisnLssvqek 68 
                  f a+++n+  t +e+ +q++++a ++ +++ +++++e   ++  +  ++  +++i+++++vq+k
  CCD25736.1 682 NFDALITNKRSTSKEFHTQTDELADQMRISAlMLNQLENSPQEYSATTNQIRDEIIASMKEVQDK 746
                 69999**********************8877367999999**********************997 PP

>> DUF4135  Domain of unknown function (DUF4135)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     2e-05      0.06     136     178 ..     914     957 ..     898    1056 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2e-05
     DUF4135 136 YrraGallallyllggtDlheeNl.iasgeqpvliDlEtllthe 178
                    + a+  ++yll+++D h++N+ i   +++v iD+  +l+++
  CCD25736.1 914 ASSLAAYSVICYLLQVKDRHNGNImIDNEGHVVHIDFGFMLSNS 957
                 5566788899**************8888889******9999763 PP

>> DUF4949  Domain of unknown function (DUF4949)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.9    0.0005       1.5      26      87 ..     555     616 ..     542     633 .. 0.93

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0005
     DUF4949  26 aynlshyntssswsfiigPikaeseeealeesnkvlskmsaiGvPdsededvicsyetgekd 87 
                 ++n s+  t s+ s++++ ++ +++++++ ++ + +s  ++i + ++++++   +y+ ++++
  CCD25736.1 555 TFNESNGRTGSNLSYVVSDLDNDNDDTSILRTPSDVSLAESISSTNNNNNNNNTNYDNNNNN 616
                 7899999********************************************99999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1079 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1529  (0.0852808); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 7347.39
//
Query:       CCD25737.1  [L=599]
Description: hypothetical protein NDAI_0F04190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-130  436.5  51.8   1.3e-130  436.2  51.8    1.0  1  AA_permease      Amino acid permease
    2.9e-30  105.5  62.2    4.6e-30  104.8  61.6    1.6  1  AA_permease_2    Amino acid permease
  ------ inclusion threshold ------
      0.025   14.2   1.8        1.5    8.4   0.4    3.2  2  RhodobacterPufX  Intrinsic membrane protein PufX


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  436.2  51.8  2.2e-134  1.3e-130       1     474 [.     101     561 ..     101     564 .. 0.98

  Alignments for each domain:
  == domain 1  score: 436.2 bits;  conditional E-value: 2.2e-134
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+ +ialgg iGtglf+g++  l + Gp+g l+ayl++g +i+++++slge+at++p++++++++++rfl+p++G++ G++y+f+w++++a+e+ +++
   CCD25737.1 101 HLGMIALGGTIGTGLFIGIATPLTNSGPVGSLIAYLFMGSIIYFITQSLGEMATFIPVTSSITVFSKRFLSPAFGVANGYMYWFNWAITFAVEISVVG 198
                  889*********************************************************************************************** PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfakeee 195
                   +i++w  ++++p + +++a+f+v+++++n++ vkvyge+ef++a+ik++ai ++++   i+++gg  ++g+ gfr++ ++g +   +++++    ++
   CCD25737.1 199 QVIEYW--TDKVP-LAAWIAIFWVLITLLNFFPVKVYGEIEFWIAFIKVLAIMGYLLYALIIVCGGS-SQGPiGFRYWRNPGPWGPGIISKD---VNT 289
                  ******..*****.*********************************************99999999.66666**********999999999...999 PP

  AA_permease 196 gafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlapli 292
                  g+f++++s ++ ++f+++G+elv+i+agE+++P+k++P+ai++vv+ri++fY++sl++ig+lvp+nd  l + sa+  +spfvi i+++g +vl++++
   CCD25737.1 290 GRFLGWVSSLINAAFTYQGTELVGITAGEAANPRKTVPRAINKVVFRIALFYIMSLFFIGMLVPYNDERLASTSAVIaSSPFVISIQNAGTKVLPDIF 387
                  9********************************************************************9997776579******************* PP

  AA_permease 293 naviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrf 390
                  na++ ++++s+ans +y++sRvly+la +g aPk ++ v+++gvP+ +++++++++lla+l+ + n++  ++fn+l++is+l+gl  wl+i++s++rf
   CCD25737.1 388 NAIVMITIISAANSNVYVGSRVLYALALSGNAPKQFAFVTRYGVPYLGVIVTSALGLLAFLVVNNNAN--TAFNWLINISTLAGLCAWLFISISHIRF 483
                  ************************************************************99999999..**************************** PP

  AA_permease 391 Rkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                  ++alk +g+s ++l+fka l+p+g++++ ++++ i+ i+++ a+ +       w+++ f+ +y++++++ ++++g ++++++++
   CCD25737.1 484 MQALKFRGISRDDLPFKAKLMPFGAYYATFFVTVIIFIQGFQAFSP------HWDTTAFFTSYISLIILAVLFIGCQIFYRCRF 561
                  **********************************************......***************************99876 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8  61.6   7.8e-34   4.6e-30       7     419 ..     103     544 ..      97     550 .. 0.76

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 7.8e-34
  AA_permease_2   7 falvigsvigsgifvkn...laasggpa..lilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasils 97 
                     ++++g +ig+g f+     l+ + gp+  li +++ +++i++++++  + E+++ +p    i v++k++ ++ ++  +++++wf +++++a+ +s
     CCD25737.1 103 GMIALGGTIGTGLFIGIatpLT-NSGPVgsLIAYLFMGSIIYFITQS--LGEMATFIPVTSSITVFSKRFLSPAFGVANGYMYWFNWAITFAVEIS 195
                    578999******8887666333.444444488889999999988888..66****************************************999** PP

  AA_permease_2  98 vaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdtffpn... 185
                    v+++ + ++++ +      l+ +i +++ +l++l+n + +k ++ i ++++ +k+l  +   ++ +li+v+gg ++ +     + + + + p+   
     CCD25737.1 196 VVGQVIEYWTD-K----VPLAAWI-AIFWVLITLLNFFPVKVYGEIEFWIAFIKVL-AIMGYLLYALIIVCGGSSQGPigfryWRNPGPWGPGiis 284
                    ******99775.3....3455564.456778899*********************6.666677799999999988888887774444446666432 PP

  AA_permease_2 186 ..gwpgv....llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddei..anlsn..lgsvaalffeavgg 269
                      +++g     +++l  ++++++G e +   + e+ +  k+vp+ai+ ++  ++++y+   +++ + vp +    a++s     s++ +  +++g 
     CCD25737.1 285 kdVNTGRflgwVSSLINAAFTYQGTELVGITAGEAANprKTVPRAINKVVFRIALFYIMSLFFIGMLVPYNDErlASTSAviASSPFVISIQNAGT 380
                    22555424565668899*****************6666489***************************98444354444422224699******** PP

  AA_permease_2 270 kvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllas.saaynfllsvsslgliisyll 364
                    kv+  i+++++++ ++ a+n+ v+  srvl+ala  g  P+ fa v ++g p+ ++i+t  + l+ +l++   + ++a+n+l ++s+l+ ++ +l+
     CCD25737.1 381 KVLPDIFNAIVMITIISAANSNVYVGSRVLYALALSGNAPKQFAFVTRYGVPYLGVIVTSALGLLAFLVVNN-NaNTAFNWLINISTLAGLCAWLF 475
                    ***************************************************************777766654.36********************* PP

  AA_permease_2 365 liigal..........ilrkkrphlkr...pgkilvaiigalfllfllvalffppkgpatqssliyt..i 419
                    ++i+ +          i r++ p + +   +g++  a++++ +++f+  + +f p   +t + + y   i
     CCD25737.1 476 ISISHIrfmqalkfrgISRDDLPFKAKlmpFGAY-YATFFVTVIIFIQGFQAFSPHWDTTAFFTSYIslI 544
                    ***9995555444444444444444335534434.44444444444444444433333333333222323 PP

>> RhodobacterPufX  Intrinsic membrane protein PufX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.012        71      34      55 ..     334     355 ..     331     361 .. 0.81
   2 ?    8.4   0.4   0.00026       1.5      23      44 ..     503     524 ..     500     528 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.012
  RhodobacterPufX  34 fvlvllfllvalaliGrlLPeq 55 
                      ++   lf ++ l +iG l P +
       CCD25737.1 334 VFRIALFYIMSLFFIGMLVPYN 355
                      45566899***********975 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00026
  RhodobacterPufX  23 lMlkGAgyAavfvlvllfllva 44 
                      lM  GA yA  fv v++f+ ++
       CCD25737.1 503 LMPFGAYYATFFVTVIIFIQGF 524
                      8999******999999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1156  (0.0644765); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 4125.01
//
Query:       CCD25738.1  [L=566]
Description: hypothetical protein NDAI_0F04200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.4e-129  431.2  51.2     5e-129  431.0  51.2    1.0  1  AA_permease    Amino acid permease
    1.1e-29  103.6  55.4    1.5e-29  103.1  55.4    1.2  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
        1.6    8.9   7.9        1.3    9.2   0.6    3.4  3  YrhC           YrhC-like protein


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  431.0  51.2  8.4e-133    5e-129       1     477 [.      68     531 ..      68     533 .. 0.97

  Alignments for each domain:
  == domain 1  score: 431.0 bits;  conditional E-value: 8.4e-133
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpelGfviGlnylfswitvlaleltaas 98 
                  h+ +ialgg iGtglf+g+++ l   Gp+g l+ayl+ g+v++ v++slge+at++p++++f+ +++rfl+p+lG + G++y+fsw++++alel +++
   CCD25738.1  68 HIAMIALGGTIGTGLFLGIANPLMISGPVGSLIAYLFLGTVVYSVTQSLGEMATFIPVTASFTIFSHRFLSPALGAANGYMYWFSWAMTFALELSVVG 165
                  899*********************************************************************************************** PP

  AA_permease  99 iliqfwelvtdlpkawvtgavflvvlliinlvgvkvygeaefilalikiiaiiafiivgiillaggkpnkgagfrflgdngsifknnlppgfakeeeg 196
                   +iqfw  + ++p + +++++f+v+l+i nl+ v+ yge+ef++a++k+ ai++fii  +++++g++++   gfr++ ++g +   +++++   ++e 
   CCD25738.1 166 QIIQFW--TFAVP-LPAWISIFWVILTISNLFPVRIYGEIEFWIAFLKVNAILGFIIYCFCIVCGAGKTGPVGFRYWRNPGPWGTGIISSN---IAEA 257
                  ******..88999.99***************************************************99999*******************...9999 PP

  AA_permease 197 afknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa.aspfvifikesgvsvlaplin 293
                  +f++++s ++ ++f+f+G+elv+i+agE+++P++++Pkai++vv+ri++fY+lsl++igllvp++d +l ++   + +spf+i+i++sg ++l++++n
   CCD25738.1 258 RFLGWASSLINAAFTFQGTELVGITAGEAANPRQTVPKAIRKVVFRILVFYILSLFFIGLLVPYDDVKLKSENSYVsSSPFIIAIENSGTKILPHIFN 355
                  *******************************************************************99987666679******************** PP

  AA_permease 294 aviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsylrfR 391
                   vil++++s++ns +y++sR+l+ lak+g+ Pk ++k +k+gvP+ a+++++++++la++ +s   +  ++f++ll++++++g++ wlli+++++rf+
   CCD25738.1 356 GVILVTIISAGNSNVYIGSRLLFGLAKNGTGPKLFAKTTKSGVPVFAVVFTSLFGALAFMETSTGGD--EAFQWLLNVVGVAGFFSWLLISFAHIRFM 451
                  ***********************************************************66666666..***************************** PP

  AA_permease 392 kalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkrpql 477
                  + l+ +g+s ++l+fka ++p++++++ +++iii+ +++++a+++      ++++ +f+a+y++v+lf i++   +l++k++  ++
   CCD25738.1 452 QCLQSRGISRNDLPFKAKFMPYLAYYATIVMIIIIFFQGFTAFAP------KFDVLNFFASYISVFLFFIFWGSFQLWFKCRYVWK 531
                  *********************************************......99***************************987766 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1  55.4   2.6e-33   1.5e-29       5     410 ..      68     500 ..      64     520 .. 0.78

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 2.6e-33
  AA_permease_2   5 safalvigsvigsgifvkn....laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaafgkkvaflsawfnwfayvpvlasil 96 
                      +++++g +ig+g f       ++  +  +li +++++++++s  v   + E+++ +p       +++++ ++ ++  +++++wf+++ ++a+ l
     CCD25738.1  68 HIAMIALGGTIGTGLFLGIanplMISGPVGSLIAYLFLGTVVYS--VTQSLGEMATFIPVTASFTIFSHRFLSPALGAANGYMYWFSWAMTFALEL 161
                    67899*********998744455555566669999999999985..666788******************************************** PP

  AA_permease_2  97 svaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....stetdtffpngw 187
                    sv+++ ++++++  + +   ++   ++++ +++++ n++ +++++ i ++++ lk+   ++ +ii  +++v+g g + +     + + + + +++ 
     CCD25738.1 162 SVVGQIIQFWTFA-V-P--LPAW--ISIFWVILTISNLFPVRIYGEIEFWIAFLKVN-AILGFIIYCFCIVCGAGKTGPvgfryWRNPGPWGTGII 250
                    *********8763.3.2..2222..2556788899*********************6.55556667777777777776666676444445666666 PP

  AA_permease_2 188 pgv.........llgllivlwsfdGfesaanvseevkk.k.dvpkaifigllivlvlyllvniaflgvvpddei....anlsn...lgsvaalffe 265
                    +++         +++l  ++++f+G e +   + e+ + + +vpkai  ++  +lv+y+l  +++   vp d +    +   n   + s++ +  e
     CCD25738.1 251 SSNiaearflgwASSLINAAFTFQGTELVGITAGEAANpRqTVPKAIRKVVFRILVFYILSLFFIGLLVPYDDVklksE---NsyvSSSPFIIAIE 343
                    654456666665668999*****************7777439********************************64431...33334557****** PP

  AA_permease_2 266 avggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliis 361
                    ++g k++ +i++ +i + ++ a+n+ v++ sr+l+ la+ g+ P+ fak+ k g p+ a+++t ++  + ++ ++++ ++a+++ll+v  ++ ++s
     CCD25738.1 344 NSGTKILPHIFNGVILVTIISAGNSNVYIGSRLLFGLAKNGTGPKLFAKTTKSGVPVFAVVFTSLFGALAFMETSTGGDEAFQWLLNVVGVAGFFS 439
                    *******************************************************************99999898888****************** PP

  AA_permease_2 362 yllliigal..........ilrkkrphlkr..pgkilvaiigalfllfllvalf..fppkgpa 410
                    +ll++++ +          i r + p + +  p  +l +   +++++++++ +f  f pk  +
     CCD25738.1 440 WLLISFAHIrfmqclqsrgISRNDLPFKAKfmP--YLAYYATIVMIIIIFFQGFtaFAPKFDV 500
                    *****9999544444444444444444444552..3333333333333333333113444333 PP

>> YrhC  YrhC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.6   0.00021       1.3      19      60 ..      98     139 ..      98     145 .. 0.91
   2 ?    2.1   0.3     0.034     2e+02      17      38 ..     306     327 ..     301     340 .. 0.73
   3 ?   -3.5   0.0         2   1.2e+04      40      61 ..     425     446 ..     422     449 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00021
        YrhC  19 alsaFLyiGlviPseaketlkksillgaivvfLllaflflrr 60 
                 +l+a+L++G+v+ s  ++  ++++++++++ f +++  fl+ 
  CCD25738.1  98 SLIAYLFLGTVVYSVTQSLGEMATFIPVTASFTIFSHRFLSP 139
                 689*****************************9999988775 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.034
        YrhC  17 LLalsaFLyiGlviPseaketl 38 
                  + + + ++iGl++P + ++  
  CCD25738.1 306 VFYILSLFFIGLLVPYDDVKLK 327
                 455566789******9877655 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 2
        YrhC  40 ksillgaivvfLllaflflrrs 61 
                  ++ll +++v+  +++l+++ +
  CCD25738.1 425 FQWLLNVVGVAGFFSWLLISFA 446
                 5678888888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.45
# Mc/sec: 3790.74
//
Query:       CCD25739.1  [L=170]
Description: hypothetical protein NDAI_0F04210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-15   56.8   1.7    1.8e-15   56.5   1.7    1.1  1  AA_permease  Amino acid permease
  ------ inclusion threshold ------
       0.12   12.9   0.0       0.19   12.3   0.0    1.4  1  Pet100       Pet100


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   1.7     2e-19   1.8e-15     382     474 ..      38     128 ..      35     133 .. 0.95

  Alignments for each domain:
  == domain 1  score: 56.5 bits;  conditional E-value: 2e-19
  AA_permease 382 liilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                  +i++s++rfR+a ++q++ + elgfk++++++g+ ++ ++ i il++++++ +++   g++++++ + ++ yl ++++l++++g+k+++kn+ 
   CCD25739.1  38 VICVSHVRFRRAVHVQSKPTGELGFKSQVGVWGSSYAAIMTICILIAQFWVVIAP--IGDGKLETKNLFENYLAMPILLALYFGYKIYTKNWT 128
                  79*************************************************7777..778889*****************************7 PP

>> Pet100  Pet100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.1e-05      0.19       2      41 ..      94     134 ..      93     163 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
      Pet100   2 GgwnLEvfk.fglYvffPvgvfyyfnqpeyfeefvvktkre 41 
                 G+ +LE+   f  Y+++P+ + +yf+   y +++++ +k +
  CCD25739.1  94 GDGKLETKNlFENYLAMPILLALYFGYKIYTKNWTIFIKAK 134
                 6667777653678***************88888*9988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       392  (0.021864); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1260.25
//
Query:       CCD25740.1  [L=2022]
Description: hypothetical protein NDAI_0F04220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-92  308.5   8.0    6.7e-92  308.5   8.0    4.8  5  FH2       Formin Homology 2 Domain
    3.3e-41  141.1   4.3    3.3e-41  141.1   4.3    4.1  4  Drf_FH3   Diaphanous FH3 Domain
    2.7e-26   92.3   9.9    2.7e-26   92.3   9.9    5.7  4  Drf_GBD   Diaphanous GTPase-binding Domain


Domain annotation for each model (and alignments):
>> FH2  Formin Homology 2 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.35   2.1e+03      26      80 ..     635     683 ..     628     718 .. 0.63
   2 ?   -2.7   3.5      0.39   2.3e+03     274     326 ..     733     786 ..     714     797 .. 0.53
   3 ?   -4.9   4.9       1.9   1.1e+04      35      96 ..     790     848 ..     775     902 .. 0.76
   4 ?   -3.6   6.2      0.75   4.5e+03     283     338 ..     926     980 ..     866     985 .. 0.75
   5 !  308.5   8.0   1.1e-95   6.7e-92       3     372 .]    1348    1739 ..    1346    1739 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.35
                 TSCCCCTCCHHHHCTSHHHHHHHHTBSC--HCCH......HCSCCTTCCESSS-H CS
         FH2  26 stvWdklkeesfekeldlseleelFsakekkkkkkksekskkskkkkkkvklLdp 80 
                 +++Wd +k +++e +l +s +++lF ++++  ++k     + +++ +k++kl+d+
  CCD25740.1 635 KNLWDACKGTENE-KLLISLVQHLFLSSSQLIEDK-----QDATQLSKQLKLMDS 683
                 5699999988666.888888888888887754444.....455555555555554 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.39
                 CTS-HHHHHHHHHHHHHHH.HHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHH CS
         FH2 274 akvnleslekevkklekgl.kklekelessekkeepsdkflevlkeflkeaeek 326
                 ++ +++ l++++k+ e+gl  +l++el++ ++ + ++++++e+l+  l++ ++k
  CCD25740.1 733 SQAEIDLLSQKLKNAEHGLvGQLQDELRQRDRMFAKNQRITEQLQAELEDLKKK 786
                 444555555555555555413555555555555555555555555555554444 PP

  == domain 3  score: -4.9 bits;  conditional E-value: 1.9
                 HHHHCTSHHHHHHHHTBSC--HCCH......HCSCCTTCCESSS-HHHHHHHHHHHHHH.TS- CS
         FH2  35 esfekeldlseleelFsakekkkkkkksekskkskkkkkkvklLdpkrsqniaIlLkkl.klt 96 
                 e++e+e++l +++++ +a+++k + +k    k+skk k      ++ ++qni+ +L++  + t
  CCD25740.1 790 EKHEQEVELRKMLTILNARSDKGEIEK----KSSKKHKRIPGSFESSKKQNIQKVLQEGlNRT 848
                 456668888888888888888877766....77777777777888888888876665543544 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 0.75
                 HHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         FH2 283 kevkklekglkklekelessekkeepsdkflevlkeflkeaeeklkkleeelkeak 338
                 k++++l++ l++++ e ++ +k ++ ++++ e  +e  ++a ++lk+le+++k+  
  CCD25740.1 926 KKLNELRQTLANIQNESNDISK-FNVEERVNELFNEKRSTALQRLKELETKYKDFG 980
                 5677777777777777777777.888888888888888888888888888777765 PP

  == domain 5  score: 308.5 bits;  conditional E-value: 1.1e-95
                  XX---SS-B------EESSGGCTTSCCCCTCCHHHHC....TSHHHHHHHHTBSC--HCCH......HCSCCTTCCESSS-HHHHHHHHHHHHHH.T CS
         FH2    3 kkikpkkkLkplhWdkvkpsqdrstvWdklkeesfek....eldlseleelFsakekkkkkkksekskkskkkkkkvklLdpkrsqniaIlLkkl.k 94  
                  + ++p+kkLk+lhW+kv++++++  +W   k+e+f++    +++lsele+ F+a+e k+ +      +k+kk  +k+++L+++ sq+++I+L+++ +
  CCD25740.1 1348 NYPRPHKKLKQLHWEKVEATDNS--IWRANKAEQFADdlyeKGVLSELENAFAAREIKSLA------SKQKKDLQKITFLSHDVSQQFGINLHMYaS 1436
                  6789******************8..***********99**9****************9888......56**************************** PP

                  S-HHHHHHHHHTTTTCCCT.............HHHHHHHH.HHCGGHHHHHHHHCTCTS......GTTB-HHH.HHHHHHTT.STTHHHHHHHHHHH CS
         FH2   95 ltaeeiveaileldeeald.............lellenLl.kmaPtkeelkklkeykge......vseLseae.qFllelvk.iprlekRleallfk 169 
                  l++ +++++il++d++ l+             +++  nL+ ++aP+ ++++ +k+ +++      ++eL++a+ ++l+ +v+  +++ +R++al++ 
  CCD25740.1 1437 LDVPDLITKILKCDRDFLQtpsvieflsrpeiVDVSVNLArNYAPYMQDWEGIKNVEDAkppeknPNELQRADqIYLQLMVNlQSYWGSRMRALKVI 1533
                  *****************************************************988887889999******************************** PP

                  HTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTTSBHHHHHHHHHHTTSGGGGGHHHH CS
         FH2  170 stfeeeveelkrslealeaaseeLknskkfkklLeliLalGNymNdgtrrgqAkGFkLssLlkLsdvKstdnkttLLHylvkiireklpevldfsse 266 
                   tfe+e++el ++l+++++a+++L++s+++k+++ +iLa+GNymNd++  +qA+GFkL +L++L  +K++ n++t+L+y++ki+r+++p +++f  e
  CCD25740.1 1534 TTFEKEYNELLTKLRKVDRAVSSLQESENLKNVFGVILAVGNYMNDTS--KQAQGFKLATLQRLTFIKDSTNTMTFLNYVEKIVRTNYPAFNKFLVE 1628
                  **********************************************88..9********************************************** PP

                  TTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCT....TSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT.CCHHH CS
         FH2  267 Lknvkkaakvnleslekevkklekglkklekelessek....keepsdkflevlkeflkeaeeklkkleeelkeakelvkelveYfgedkk.evspe 358 
                  L+ v ++ k+++e+l++++k++++++ ++e+++e ++     k++p d++l+++ + l++a++k + l +e k +  ++ +l++ +ged+  ++ ++
  CCD25740.1 1629 LEPVLDVVKISIEQLVDDCKEFSQSIVNVERSIEIGNLsdssKFHPFDRVLAKVLPSLPDARKKGELLGDEVKLTIMEFLRLMQIYGEDSGdKFAKN 1725
                  *************************************99999************************************************99***** PP

                  HHHHHHHHHHHHHH CS
         FH2  359 effkilreFlkefk 372 
                  +ffk++++F++e+k
  CCD25740.1 1726 SFFKKFADFITEYK 1739
                  ************97 PP

>> Drf_FH3  Diaphanous FH3 Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   4.3   5.5e-45   3.3e-41       2     195 .]     512     706 ..     508     706 .. 0.97
   2 ?   -5.8   4.8         3   1.8e+04     116     194 ..     875     956 ..     824     957 .. 0.54
   3 !    4.1   0.1    0.0051        30      92     168 ..    1533    1615 ..    1519    1618 .. 0.69
   4 ?   -3.6   0.7       1.2     7e+03     100     137 ..    1731    1768 ..    1724    1789 .. 0.71

  Alignments for each domain:
  == domain 1  score: 141.1 bits;  conditional E-value: 5.5e-45
                 HHHHHHHHHHHHHHCCT-SSTTHHHHHHHHH......HSS-HHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHCTTHHHHHHHHCTSCSHHHHHHHHHH CS
     Drf_FH3   2 ghekvleatldfkevaeergrfrslvgaldel.....enelveykvatmllInalvnspedlqfRlhLRseflalGLdkiidklreleneeLddqlqaf 95 
                 +++  +e  ld+      rg+++s+vga+d++     en+ +ey+ ++m++In+l+ + +++++R+ LR+++  +G+ +i+++++ l +e++ +q++++
  CCD25740.1 512 AWLFAVEHSLDG------RGKMGSFVGASDDYknsggENATLEYCQWSMIFINHLCLCSDNINQRMLLRNKLEYCGIVRIMNQIKSLHYEKVIEQIDVY 604
                 577777888888......********************************************************************************* PP

                 HHHHHHHHHHHHHHHT.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     Drf_FH3  96 eeerneDeeellerae.dktvdlddpeelfellknkvkdteaepyllsilqhllli.......rddeeekesylklleelvsqivlqrtkidpkkderk 186
                 e+++ +D ++lle ++ + +++l+dp++l+++l++ +k+te+e++l+s++qhl+l        ++d +++ ++lkl+++lv+++++ +t      d+++
  CCD25740.1 605 ENSKLDDINKLLELSNkNANINLHDPTSLVKNLWDACKGTENEKLLISLVQHLFLSssqliedKQDATQLSKQLKLMDSLVTNVSVAST------DQES 697
                 *************9999**********************************************************************99......8999 PP

                 XXXXXXXXX CS
     Drf_FH3 187 slevaieeL 195
                 ++++ai++L
  CCD25740.1 698 TMNMAIQRL 706
                 *******98 PP

  == domain 2  score: -5.8 bits;  conditional E-value: 3
                 XXXXXXXXXXXX.XXXXXXXXXXXXX.XXXXXXXXX.....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     Drf_FH3 116 dlddpeelfell.knkvkdteaepyl.lsilqhllli...rddeeekesylklleelvsqivlqrtkidpkkderkslevaiee 194
                 +++d e+   +l ++++ + e +++     +++l      +++++e+  ++k l+el + +++ +++   ++ +++++e  ++e
  CCD25740.1 875 QMEDIENEARELeMTNFAEFEKKKLEpAPKIKKLKQKkqnKNEKKEEDDKIKKLNELRQTLANIQNE--SNDISKFNVEERVNE 956
                 4444444444443444444444444333333333333333566666666666666666666555443..333556666666655 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.0051
                  HHHHHHHHHHHHHHHHHHHT.........XXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXX CS
     Drf_FH3   92 lqafeeerneDeeellerae.........dktvdlddpeelfellknkvkdte..aepyllsilqhlllirddeeekesylklleelv 168 
                  ++ fe+e ne   +l    +         ++  +l+++  +   + n + dt+  a++  l++lq+l++i +d+++   +l+++e++v
  CCD25740.1 1533 ITTFEKEYNELLTKL----RkvdravsslQESENLKNVFGVILAVGNYMNDTSkqAQGFKLATLQRLTFI-KDSTNTMTFLNYVEKIV 1615
                  555666666333333....22224666666777777777777777777777661145556**********.88888888999999887 PP

  == domain 4  score: -3.6 bits;  conditional E-value: 1.2
                  HHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     Drf_FH3  100 neDeeelleraedktvdlddpeelfellknkvkdteae 137 
                  ++D+ +  ++a+++++ l++ e+++e  k+ v++ + +
  CCD25740.1 1731 FADFITEYKKAQTQNLRLEEEEKVYERHKKMVEEQQRK 1768
                  45666666777777888888888777777777666554 PP

>> Drf_GBD  Diaphanous GTPase-binding Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   9.9   4.5e-30   2.7e-26       4     184 ..     173     457 ..     170     460 .. 0.95
   2 ?  -13.9  14.2         3   1.8e+04      29      68 ..     898     920 ..     751     977 .. 0.66
   3 ?   -5.3   4.9         3   1.8e+04      39      80 ..    1046    1080 ..    1018    1146 .. 0.61
   4 ?   -0.4   0.8      0.12     7e+02      11      54 ..    1729    1779 ..    1720    1843 .. 0.68

  Alignments for each domain:
  == domain 1  score: 92.3 bits;  conditional E-value: 4.5e-30
     Drf_GBD   4 p.deeeidklFeelleel....nlpeekreallalpiekKwqlvvqdkkkkakke............................................ 53 
                 p d+ ei+ l++e++ ++    +lp  k+++l++++i kKw +v qd + ++kk                                             
  CCD25740.1 173 PtDPSEIEYLYQEIMIKRnilqSLPGTKQDELMSYDIGKKWLIVKQDLQNEWKKFkskgakashsigpdnnnnnnnnynnhlilgspsksnnmispksn 271
                 44899*************999999****************************9999******************************************* PP

     Drf_GBD  54 ...................................................eklsksksksneeespesyvkklkddslkekqlesLrVaLrtqplsWv 101
                                                                     + s+++   + ++ p++yvkk+ +d+l++++++ L+V Lrt++l+Wv
  CCD25740.1 272 lnnfespssslsastqtttnnykqynnkpskrsasnisqpksttevysnshSNSSNTTLTDKTNRLPIEYVKKIISDTLTSEEMKDLWVTLRTEQLDWV 370
                 ********************************************9999875555555666777889********************************* PP

     Drf_GBD 102 krFieleGlvaLlnvLskinekkaee....eedlkkeyeiikClKalmNnkvGldavlahksvikllaqsldserlktrklvlelLt 184
                   Fie++G++a++nvL k  +k+  +    ++ l+ke +  kC++ l   ++Gl    +h+ + +++a+ l s+ l+trk+++e+  
  CCD25740.1 371 DAFIEHQGHIAMANVLMKSIYKTTPNekltSQLLEKENSFFKCFRVLSMLSQGLREFTKHELMAQTIARGLFSTTLSTRKMATEIFV 457
                 ******************9999988877888999**************************************************975 PP

  == domain 2  score: -13.9 bits;  conditional E-value: 3
     Drf_GBD  29 allalpiekKwqlvvqdkkkkakkeeklsksksksneees 68 
                 +l+  p  kK +           ++      k+++ne++ 
  CCD25740.1 898 KLEPAPKIKKLK-----------QK------KQNKNEKKE 920
                 222222222221...........11......222222222 PP

  == domain 3  score: -5.3 bits;  conditional E-value: 3
     Drf_GBD   39 wqlvvqdkkkkakkeeklsksksksneeespesyvkklkdds 80  
                   ++ ++ ++       + s+s+s s++++s e+ ++++k+ +
  CCD25740.1 1046 STFSESSSS-------SSSSSSSSSSSSSSDEEEIDDIKSRD 1080
                  222222222.......22333344444444455555555544 PP

  == domain 4  score: -0.4 bits;  conditional E-value: 0.12
     Drf_GBD   11 klFeelleel..nlpeekreallalpiekKwqlvvqdkkkkakke.....e 54  
                  k+F++ ++e   + +++ r + +++ +e+ +++v+ ++ k ++ e      
  CCD25740.1 1729 KKFADFITEYkkAQTQNLRLEEEEKVYERHKKMVEEQQRKAQEAEisrvnS 1779
                  778888888864444555666677888888889888877666666444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2022 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3029  (0.168944); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        22  (0.00122706); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.50u 0.32s 00:00:01.82 Elapsed: 00:00:00.52
# Mc/sec: 11797.57
//
Query:       CCD25741.1  [L=701]
Description: hypothetical protein NDAI_0F04230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-25   86.5  12.2      9e-25   86.5  12.2    3.3  2  Sec2p            GDP/GTP exchange factor Sec2p
  ------ inclusion threshold ------
      0.046   13.9   0.2       0.19   12.0   0.1    2.2  2  DUF2552          Protein of unknown function (DUF2552)
       0.07   13.2   0.1       0.22   11.5   0.1    1.9  1  Rep-A_N          Replication factor-A protein 1, N-terminal d
       0.12   12.1   0.3       0.25   11.1   0.3    1.5  1  YfmQ             Uncharacterised protein from bacillus cereus
       0.16   12.1   2.4       0.42   10.7   0.0    2.9  3  ArfGap           Putative GTPase activating protein for Arf
       0.22   12.1   0.1       0.22   12.1   0.1    2.8  2  Stimulus_sens_1  Stimulus-sensing domain
          1    9.1  27.5       0.15   11.8   8.6    2.4  2  DUF4201          Domain of unknown function (DUF4201)


Domain annotation for each model (and alignments):
>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   5.9      0.61   1.6e+03      32      73 ..      37      81 ..       3      83 .. 0.78
   2 !   86.5  12.2   3.5e-28     9e-25       2      89 ..      81     168 ..      80     171 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.61
                HHHHHHHHHHH...HHHHHHHHHHHHHHHHHTTHCHCCCHCTSSS CS
       Sec2p 32 eeANkmVaaar...kekealekkneklkeqLkeketlleslqeqL 73
                ++AN+ +++ +   ++++ lekk  +l++ L+   + +++l e L
  CCD25741.1 37 NQANRTITSQKkslEQSHMLEKKSIELEQSLTARTEEVNKLRERL 81
                678888888886666788888888888888888888887777766 PP

  == domain 2  score: 86.5 bits;  conditional E-value: 3.5e-28
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTTXXXXXXX CS
       Sec2p   2 lkeekkkreeaekekkklekEledLtasLFeeANkmVaaarkekealekkneklkeqLkeketlleslqeqLkeLkevlekmeeesee 89 
                 l+ e k re+ae e +kl kE+edLta+LF+eAN+mVa+arke +a e+ n++l  qL+ek++lle+l  qLk+Lk+vl+++e+e+++
  CCD25741.1  81 LTREIKLRESAEIEVEKLSKEVEDLTATLFDEANNMVADARKEAHAKEILNSRLMGQLREKDNLLETLTLQLKSLKKVLQNVETENNR 168
                 6789999****************************************************************************99875 PP

>> DUF2552  Protein of unknown function (DUF2552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       6.7   1.7e+04      26      34 ..     372     380 ..     370     385 .. 0.80
   2 ?   12.0   0.1   7.3e-05      0.19      27      76 ..     503     553 ..     481     556 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 6.7
     DUF2552  26 PysllhWsi 34 
                  y l hW +
  CCD25741.1 372 TYPLCHWCL 380
                 699****86 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 7.3e-05
     DUF2552  27 ysllhWsiaGvesekkdvWl.lqdevtfetkefatldeaiaWieehmeeit 76 
                  s+lhW+  G+ s++  v   +  ev  + +ef+t+d + ++i ++m+  t
  CCD25741.1 503 RSILHWAHIGIWSVDDSVSTkVGPEVFTQDEEFTTIDMTAEYIAQDMPLAT 553
                 589********9999999752778999999*****************9766 PP

>> Rep-A_N  Replication factor-A protein 1, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   8.7e-05      0.22      18      55 ..     147     184 ..     131     206 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.7e-05
                 -TEEEEEEEEEE--..SSSS-EEEEEEESSSEEEEEEE CS
     Rep-A_N  18 kpvlQvvelkkinskaeesseRyrlllsDgknkakaml 55 
                 + +lQ+  lkk+ ++ e++++Ry ++l D+ + + a l
  CCD25741.1 147 TLTLQLKSLKKVLQNVETENNRYSMILPDSATISGASL 184
                 678***************************99877755 PP

>> YfmQ  Uncharacterised protein from bacillus cereus group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   9.8e-05      0.25      15      57 ..      12      54 ..       8      64 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.8e-05
        YfmQ 15 kllvsslPsgvvesliskfevhakleeenvtitlegknlegee 57
                 + vssl ++++es+  + ++ +kl++ n tit + k le+++
  CCD25741.1 12 SIQVSSLSTQLIESIGKQSDLEEKLNQANRTITSQKKSLEQSH 54
                6789************************************976 PP

>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       3.2   8.2e+03      51      86 ..     100     135 ..      91     146 .. 0.70
   2 ?   10.7   0.0   0.00016      0.42      34     102 ..     374     449 ..     366     457 .. 0.80
   3 ?   -1.6   0.1         1   2.7e+03      58      91 ..     558     591 ..     550     606 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.2
                 --EEETTTS---HHHHHHHHHTCHHHHHHHHTTTC- CS
      ArfGap  51 skvrsltldkwedeelellkalgNkkaneileaklp 86 
                 ++v+ lt + +++++  + +a  +++a+eil+++l 
  CCD25741.1 100 KEVEDLTATLFDEANNMVADARKEAHAKEILNSRLM 135
                 567777777777777777778888888888887774 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00016
                 EE-HHHHHHHCCS.TTT--EEETTTS---HHHH..HHHHHTCHHHHHHHHTTTC-TTTSG.....-TTCGHHHHHH CS
      ArfGap  34 flCieCsgvHrslgvhiskvrsltldkwedeel..ellkalgNkkaneileaklpkeekr.....skssskekree 102
                  lC  C    r+    + + rsl+ d w+ e++  + + + g +k+ e+   + + ++k+     +++++k+kr +
  CCD25741.1 374 PLCHWCLFKIRQTCEIFAFLRSLKTDIWNLEKVplSAISKYGSSKFSEVTTTNTNGSKKNiaatpKSENKKSKRMS 449
                 69**************************99986225677***********99998888877775444444444444 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1
                 TS---HHHHHHHHHTCHHHHHHHHTTTC-TTTSG CS
      ArfGap  58 ldkwedeelellkalgNkkaneileaklpkeekr 91 
                  ++ ++e  + ++a+gN ++++  e++ +ke  +
  CCD25741.1 558 DENTDAELAADVEATGNTTLQNKEEQNEDKEATS 591
                 4455555556677777777777666666555444 PP

>> Stimulus_sens_1  Stimulus-sensing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   8.7e-05      0.22      17      79 ..     103     163 ..      89     192 .. 0.83
   2 ?   -1.4   1.3       1.3   3.4e+03      48      91 ..     620     664 ..     561     688 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 8.7e-05
  Stimulus_sens_1  17 tetRarlYdpdGkLvaDSrtlyssrgeieraelppeeselssllerfwdwlqslllreelp.vy 79 
                      ++  a l+d+  ++vaD r  + + +ei+++ l  + +e+ +lle++  +l+sl  ++ l+ v 
       CCD25741.1 103 EDLTATLFDEANNMVADARKEA-HAKEILNSRLMGQLREKDNLLETLTLQLKSL--KKVLQnVE 163
                      456899****************.999*******888899999999999999998..44444233 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.3
  Stimulus_sens_1  48 elppeeselssllerfwdwlqslllreelpvyeergaangka.yp 91 
                      el+ e++++ +    + ++  ++  +++ +  +e++++n+++  p
       CCD25741.1 620 ELQDESNDEGTNSVDIIESYDNHSKEGNVEDVTEKQSQNTNSeLP 664
                      333344444444444555555555555555445555444444344 PP

>> DUF4201  Domain of unknown function (DUF4201)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  14.6    0.0038       9.8      49     137 ..      13     104 ..       9     105 .. 0.79
   2 ?   11.8   8.6   5.9e-05      0.15      45     124 ..      89     169 ..      88     173 .. 0.96

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0038
     DUF4201  49 ienqalnkkIee...rnkeLkrlkkkttktvhalthlkeklhmleselselkkelkekeerlaklrkelykvklerdklrkqneklkqqggl 137
                 i++ +l++++ e   ++ +L++  +++++t+   +   e  hmle+++ el+++l  ++e+ +klr++l++  + r+ ++ + ekl+++ ++
  CCD25741.1  13 IQVSSLSTQLIEsigKQSDLEEKLNQANRTITSQKKSLEQSHMLEKKSIELEQSLTARTEEVNKLRERLTREIKLRESAEIEVEKLSKEVED 104
                 677777777666233555666666666666666666667778********************************************998766 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 5.9e-05
     DUF4201  45 eqlqienqalnkkIeernkeLkrlkkkttktvhalthlkeklh.mleselselkkelkekeerlaklrkelykvklerdkl 124
                 e+++ie+++l+k++e+ ++ L    +++  +  + +h ke l+  l+ +l+e+ + l++++ +l++l+k l++v++e++++
  CCD25741.1  89 ESAEIEVEKLSKEVEDLTATLFDEANNMVADARKEAHAKEILNsRLMGQLREKDNLLETLTLQLKSLKKVLQNVETENNRY 169
                 6899**************************************9899*******************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1938  (0.108093); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.71u 0.30s 00:00:01.01 Elapsed: 00:00:00.46
# Mc/sec: 4592.10
//
Query:       CCD25742.1  [L=1302]
Description: hypothetical protein NDAI_0F04240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-90  302.5   1.9    2.6e-90  302.5   1.9    2.2  3  TIMELESS  Timeless protein
  ------ inclusion threshold ------
       0.14   12.2   0.0       0.42   10.7   0.0    1.8  1  RNA_bind  RNA binding domain
       0.22   11.5   1.4       0.68   10.0   0.3    2.2  2  Hjc       Archaeal holliday junction resolvase (hjc)


Domain annotation for each model (and alignments):
>> TIMELESS  Timeless protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.5   1.9   4.3e-94   2.6e-90       2     276 .]      34     364 ..      33     364 .. 0.96
   2 ?   -3.5   0.1      0.83   4.9e+03     172     214 ..     434     472 ..     423     473 .. 0.62
   3 ?   -1.6   0.3      0.21   1.3e+03     102     138 ..     574     608 ..     530     643 .. 0.49

  Alignments for each domain:
  == domain 1  score: 302.5 bits;  conditional E-value: 4.3e-94
    TIMELESS   2 YklgddclecLkdLkrwlrl.DdddnrrdvaralaeakilqndLipiLiqweek...............................kkklalaclrLlva 68 
                 Yklgddcl+cL+dLkrw++l Dd++nr+dva+a+ae++il++dLipiLi+we+k                                +k+al+ l+Llv+
  CCD25742.1  34 YKLGDDCLACLRDLKRWFKLvDDEQNRWDVAMAAAEYRILTDDLIPILIDWENKssaltklqnknndqtvmeniettlgfrnkvyYDKVALSSLQLLVL 132
                 *****************************************************************99999999999999987666666*********** PP

    TIMELESS  69 LTwPlelleeeeeteeqtahytqlkkalleyKaailseekgkvlkalvrlllevlakdreerterdegiieliLtLiRNilaiedpqekeksasskke. 166
                 +TwPl l +++ +t++q+a y++lkk++l yK++il+ ++gkvlka++rl+l+v+++dr +rt+rd++ii+l+L+++RN+++ie+    +++++ +++ 
  CCD25742.1 133 MTWPLVL-TDQ-STSSQIAVYSELKKHQLIYKKEILTVDNGKVLKAAIRLALNVFKIDRLSRTPRDNMIIKLVLNFFRNVASIEPG---NLTITVGRSl 226
                 ******9.767.7*************************************************************************...9999999999 PP

    TIMELESS 167 ................ddilhskliealeesgvldllltlassigkefeqeqfnllllEiiylllkgqdpeeLa.............kesekesrstke 236
                                 ddi+ +++++++++++v+ llltl+ss+++ef+q+++n++llEi+++l+k++ +++L+             k+ +++    ++
  CCD25742.1 227 prginsidtlppnvtmDDISLNAVLNCFHRNKVYGLLLTLSSSLTTEFDQDFINIPLLEIMFFLTKDVPQQALFpvpspktrsttknKDRQENVTIPSH 325
                 **********************************************************************************99887666777777889 PP

    TIMELESS 237 asrasdelskllekekakkkasikknastRHsrFggtlsv 276
                 +s ++ +ls+ll+ke+++kk+ i +n+stRHs+Fg++lsv
  CCD25742.1 326 SSYTGFQLSDLLKKENEMKKNVI-RNTSTRHSNFGALLSV 364
                 999********************.589**********987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.83
    TIMELESS 172 skliealeesgvldllltlassigkefeqeqfnllllEiiyll 214
                 +k+i+++  s +  ll  +++  +    +eq  +++lE + +l
  CCD25742.1 434 KKFINNFIGSAFNTLLHSITNYYT----TEQDRVVTLEKVEYL 472
                 455666666666666666666665....444578888877666 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.21
    TIMELESS 102 ailseekgkvlkalvrlllevlakdreerterdegii 138
                 a+ ++  ++ +k +v++   vl++  +  +e++  ii
  CCD25742.1 574 AFKHT--HQYMKSCVDITHTVLKTLEQYTSEDKALII 608
                 22222..344444444444444322222222222222 PP

>> RNA_bind  RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   7.1e-05      0.42      35      71 ..      80     116 ..      78     122 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.1e-05
                 EEEEEEETTEEEEEEEEE-HHHHHHHHHTT-SS---- CS
    RNA_bind  35 vyvsWlddtsAfvaLhrrdqasvvlktlkkeasykiq 71 
                 + ++W + +sA   L+++++ ++v+++++++  ++ +
  CCD25742.1  80 ILIDWENKSSALTKLQNKNNDQTVMENIETTLGFRNK 116
                 579*************************988877654 PP

>> Hjc  Archaeal holliday junction resolvase (hjc)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.3   0.00011      0.68      38      66 ..     602     630 ..     600     632 .. 0.92
   2 ?   -1.1   0.0      0.33     2e+03      42      71 ..     648     677 ..     640     693 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00011
                 TTEEEEEEEEEESSSEEEEEHHHHHHHHH CS
         Hjc  38 gdvvlviEvKsskkeriylkkeqveklle 66 
                 +d+ l+iE Ks+++++i + keq+e+l++
  CCD25742.1 602 EDKALIIEGKSRRRRNISVTKEQIEQLIK 630
                 6889**********************985 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.33
                 EEEEEEEESSSEEEEEHHHHHHHHHHHHHH CS
         Hjc  42 lviEvKsskkeriylkkeqvekllefarka 71 
                 + +Ev   + +r y++++ ++  ++f ++ 
  CCD25742.1 648 VEVEVNFERVQRSYINEQTIDTYMNFLQRY 677
                 56888888889*********9999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1337  (0.0745719); expected 358.6 (0.02)
Passed bias filter:                      571  (0.0318478); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.45
# Mc/sec: 8781.69
//
Query:       CCD25743.1  [L=354]
Description: hypothetical protein NDAI_0F04250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.7e-54  182.4   0.0    8.1e-54  181.7   0.0    1.4  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    5.8e-13   48.7   0.0    7.5e-13   48.3   0.0    1.2  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
    0.00015   22.0   0.0    0.00047   20.4   0.0    1.9  2  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd
     0.0047   16.5   0.0     0.0099   15.5   0.0    1.5  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7   0.0   1.8e-57   8.1e-54       2     178 .]     129     307 ..     128     307 .. 0.95

  Alignments for each domain:
  == domain 1  score: 181.7 bits;  conditional E-value: 1.8e-57
                   HHHHHHHTTHHHHHHHHHTTCC....HTTCCGSBS-GTTSEEEEES-SHHHHHHHHHHHHTT-.EEEEESSSHHHHHCHHHHTCEECSHHHHHHH-S CS
  2-Hacid_dh_C   2 alllallrrlaeadeevregew....ksekallgkelsgktvGiiGlGrIGqavakrlkafgm.kviaydrskkkeeeeeelgvelvsleellaesD 93 
                    lll +lr+ + +++++ ++ew    +     lg++ +gktvG++GlG IG+av +rlk+fg+ + i+++r+k + e   e+ +e+vs+eell++sD
    CCD25743.1 129 FLLLGALRNYSMGYRKLINNEWpvspSGGGVPLGHDPEGKTVGVLGLGGIGRAVVHRLKPFGFkRFIYHNRHKLPGE--LENDCEYVSFEELLRQSD 223
                   6899******************98777777999******************************77899999988777..55589************* PP

                   EEEE-S--STTTTTSBSHHHHHCSTTTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C  94 ivslhlpltpetrhlinaeelakmkkgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   ++s+++pl p+trh+in+e++++mk g++++NtaRG+++de+aL++aLksgk++ a+lDvfe+ep  ++ +l ++p+v+  PH++
    CCD25743.1 224 VLSINIPLGPSTRHIINDEAFEEMKTGVVIVNTARGAVIDEQALIKALKSGKVRSAGLDVFENEPEVPK-ELQDMPQVLGLPHMG 307
                   *****************************************************************9988.*************98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   1.7e-16   7.5e-13      45     133 ..      69     338 ..      24     339 .. 0.96

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 1.7e-16
                 E-TTS-BSHHHHHHH.TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH........................................ CS
                 xxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................ RF
  2-Hacid_dh  45 vrsntkvtaevleal.pkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt........................................ 102
                 v ++ ++++e+ +a  ++L  i++ g+G+D++D++++++r i+V++vp++  + +A++                                         
  CCD25743.1  69 VEQTGRFDEEIADAVpSSLIAICHTGAGYDQIDVKYFQKRHIQVSHVPNVVNNVTADTHvflllgalrnysmgyrklinnewpvspsgggvplghdpeg 167
                 44556899*******99****************************************999*************************************** PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  CCD25743.1 168 ktvgvlglggigravvhrlkpfgfkrfiyhnrhklpgelendceyvsfeellrqsdvlsiniplgpstrhiindeafeemktgvvivntargavideqa 266
                 *************************************************************************************************** PP

                 .........................................T-BHHHHHHHHHHHHHHHHHHHTTCCGTTBC CS
                 .........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 .........................................aaTeeaqeniaeeaaenlvaflkgespanav 133
                                                              e+++n+ + +  n++++++ +++  +v
  CCD25743.1 267 likalksgkvrsagldvfenepevpkelqdmpqvlglphmgTHCVETRKNMEDFVSANVESAITSGKVIAIV 338
                 ***************************************999999******************999877655 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.1e-07   0.00047       1     110 [.     169     277 ..     169     284 .. 0.89
   2 ?   -2.6   0.0       1.2   5.5e+03       6      19 ..     302     315 ..     300     339 .. 0.56

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.1e-07
                    EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHCSEEEE-SSSHHHHHHHHHS.HCCC--TT-EEEE-S---HH CS
  NAD_binding_2   1 kigfiGlGvMGsnmalnllkagykvavynrtkekveelvaegakaaesieelvasldvvitmvkagkavdevieg.llealkkgdilidgstsspe 95 
                    ++g++GlG +G+  + +l+  g+k  +y  +++   el  + +  + s eel+++ dv  + ++ g+ ++++i++  +e++k g ++++++  ++ 
     CCD25743.1 169 TVGVLGLGGIGRAVVHRLKPFGFKRFIYHNRHKLPGELE-NDC-EYVSFEELLRQSDVLSINIPLGPSTRHIINDeAFEEMKTGVVIVNTARGAVI 262
                    58**************************97766666665.555.567899************************99******************** PP

                    HHHHHHHHHHHTT-E CS
  NAD_binding_2  96 dtrelakelkekglk 110
                    d + l k+lk+ +++
     CCD25743.1 263 DEQALIKALKSGKVR 277
                    *****9999987776 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.2
                    --SHHHHHHHHHHH CS
  NAD_binding_2   6 GlGvMGsnmalnll 19 
                    Gl  MG++ ++  +
     CCD25743.1 302 GLPHMGTHCVETRK 315
                    66666665544333 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.2e-06    0.0099       3      99 ..     166     262 ..     165     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 2.2e-06
                 HTS-EEEES-SHHHHHHHHHHHHTT--EEEEE-TT-HHHHHHHHTT-EEEEHHHHHHT-SEEEE-S-.HHHHHHHHHHHTGGG--TT-EEE.ESSSHHH CS
        IlvN   3 kgkkiaviGyGsqGhaqalnlrdsgldvvvglregsksvkkAkeegfevltvaeavkkadvvmiliP.Delqkevyeeeiepnlkegkala.fahGfni 99 
                 +gk++ v+G G  G+a  + l+  g++  +  ++++  +    e+  e ++ +e+ +++dv+ i iP     ++++++e  +++k+g +++  a G  i
  CCD25743.1 166 EGKTVGVLGLGGIGRAVVHRLKPFGFKRFIYHNRHK--LPGELENDCEYVSFEELLRQSDVLSINIPlGPSTRHIINDEAFEEMKTGVVIVnTARGAVI 262
                 589***********************9999777766..666778889999*****************5467899999**99****99876415566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2770.28
//
Query:       CCD25744.1  [L=633]
Description: hypothetical protein NDAI_0F04260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-78  263.9  14.4    6.5e-40  137.4   3.9    2.2  2  HCO3_cotransp  HCO3- transporter family


Domain annotation for each model (and alignments):
>> HCO3_cotransp  HCO3- transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   3.9   3.6e-44   6.5e-40       9     174 ..      65     230 ..      57     237 .. 0.97
   2 !  132.3   2.6   1.3e-42   2.3e-38     246     505 ..     240     501 ..     233     504 .. 0.90

  Alignments for each domain:
  == domain 1  score: 137.4 bits;  conditional E-value: 3.6e-44
  HCO3_cotransp   9 gGLveDikrrlplYlsDftdalnlqclasvlFlYfaclspaitFGgLlgeategaigvseslvsaaisgilfalfagqpllilgstgPllvfekil 104
                     G++ D+k rlp+Y+ D++d++  +++ +vl  Yf +++pai+F + + + t++  gv e+l+s a++gi+f +++gqpl+i+g tgP+ +f+  +
     CCD25744.1  65 IGIWLDLKDRLPFYIQDWKDSVDYRVIPAVLETYFNNVLPAIAFAQDMFDRTDNSYGVNEVLLSSAMAGIVFGVLSGQPLCIVGVTGPISIFNYTV 160
                    599********************************************************************************************* PP

  HCO3_cotransp 105 ykfckelgldylslrvwiglwlalillilvatdasalvkyitrfteeifallIslifiyealkkllkifk 174
                    y++ k l+ +y+ + +wi++w +++ +il++ +a  l++y+t f  +if l+I ++++ + ++ l+k f+
     CCD25744.1 161 YEIIKPLNTNYFGFMFWICIWSMIFHFILAIGNAVCLLQYVTTFPCDIFGLFINIVYLQKGVQILVKQFN 230
                    ************************************************************9999999886 PP

  == domain 2  score: 132.3 bits;  conditional E-value: 1.3e-42
  HCO3_cotransp 246 llsliLflgtfllalfLkkfkksrflptkvRelisDfavliailvmvlvdvllg....vetpklevpeefkptse..krgwlinpleknpwwlvla 335
                    + s++L+++  +++l++k+f +++f+++++R +isD+a  +++l+++++ ++ g    v+ +kl + +++ pts+  ++  +     k+++  +++
     CCD25744.1 240 FASIVLAITMTVCGLTFKQFIRTPFFNHTIRVIISDYATALSVLFWSAFPHFGGyldnVNFEKLPITKSYFPTSDrfRDRSTWLAYAKISTKDIFI 335
                    7799*******************************************99776665556999********9999764422233335799******** PP

  HCO3_cotransp 336 avlpallvtiLifmdqqitavivnrkenkLkKgsgyhlDLlvvavlilvlsllGlPwlvaatvlsitHvnslkvesetsapGekpkilgvrEqRvt 431
                    a+  ++++tiL++ d+++++++ ++ + kLkK s++h D+++++++++v ++lG+P   + ++++++H +sl v  e      +++++++  qR+t
     CCD25744.1 336 ALPFGIIMTILFYFDHNVSSLMAQKYQYKLKKPSSFHYDFFLLGITTGVSGVLGIPAPNGLIPQAPLHTESLLVLDE------NQNVVRCVDQRFT 425
                    *************************************************************************9997......899********** PP

  HCO3_cotransp 432 gllvfiliglsvl..ltpvlklIPmpVLyGvFLYmgvtsLkgiqlfdRilLllmpakhqpdtiYlrkvplrkvhlF 505
                    + +  +++  ++   +  +l  IP +VL G+F  mg+  L ++ ++ Ri  l++++k++  t  l kv  + + +F
     CCD25744.1 426 NTVQGLMMLGTMTrpFLVCLGQIPQAVLSGLFWTMGINGLIDNVIIYRIIWLFTDKKKKDLTNPLNKVSRKSLIIF 501
                    *9999888766665566679*************************************9998888888887777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       952  (0.0530983); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 4432.50
//
Query:       CCD25745.1  [L=504]
Description: hypothetical protein NDAI_0F04270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-70  237.8   0.0    4.1e-70  236.4   0.0    1.6  1  Abhydrolase_1  alpha/beta hydrolase fold
    2.8e-05   24.8   0.0      4e-05   24.3   0.0    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.055   12.7   0.0       0.14   11.4   0.0    1.7  2  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.4   0.0   6.8e-74   4.1e-70       2     256 ..      66     452 ..      65     453 .. 0.95

  Alignments for each domain:
  == domain 1  score: 236.4 bits;  conditional E-value: 6.8e-74
                    EEEEE-STTTCGGG..GTTGHHHHHHHHT..TSEEEEEEETTSTTSSSTTTGB.........CHHSHHHHHHHHH..HH.HHHCTTSSEE.EEEET CS
  Abhydrolase_1   2 vlvilhGlpgssdv..waerglapaLakd..gfdvillDlrGvgySspapacin........ddygtasvaddld..ri.ldalgddklt.lvGhS 81 
                     lvi+h+l+gssdv  w++++l+++La+d  +f++++l+++G++y+s++p +in        +++++++v+dd++  ri ld+lg+++++ ++G+S
     CCD25745.1  66 CLVICHALTGSSDVadWWGPLLGDNLAFDpsRFFIVCLNSMGSPYGSFSPLSINestgerygPEFPLCTVRDDVRahRIvLDSLGVKSIAcVIGGS 161
                    59***************************************************************************999**************** PP

                    HHHHHHHHHHHHH.GGGEEEEEEESE....CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH......... CS
  Abhydrolase_1  82 mGGmialayaaey.perVkalvllga....idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkf......... 163
                    mGGm+al++ a+y +e+V++lv+l++    +++++s++eaqrq+++s+p+++dgy+  + +++ag+++a+++a+l++r+r+++++kf         
     CCD25745.1 162 MGGMLALEWTAMYgKEYVRNLVALATsarhSAWCISWSEAQRQSIYSDPKYMDGYYSLEDPPVAGLSAARMSALLTYRSRNSFENKFarrtpsiqq 257
                    ************************************************************************************************ PP

                    ..........................................................HCHHHCCHHHHHHHCHHHHH..HHHHHHHHHHHCCHHH CS
  Abhydrolase_1 164 ..........................................................pdkskrfpssgsdnasslat..galksieqwpttdsak 199
                                                                                +  ++ s +s ++ s++t  g++k i++++t++sa+
     CCD25745.1 258 qqkslqqqqqqsqryfdisrptstineksiqihndgyvprydsncsskrlnsisttssTGSQESLHSVSSVTSLSSVTlnGEVKGINPAQTYFSAQ 353
                    ****************************************************9999994444444444444444444334999************* PP

                    HHHHHHC.........................................THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS.EEEEEEETCSSSHH CS
  Abhydrolase_1 200 lllrlre.........................................lknvlaptlvisgtsDplvppkaledlaqllpk.krlvvisdagHlaf 253
                    ++lr+++                                         l ++++p+l+i++ sD+l++++++e+la+ +p+  +++++s++gH+af
     CCD25745.1 354 SYLRYQGtkfvnrfdancyiaitrkldthdlardrvseeagndgiekvLEDIKQPSLIIGIKSDGLFTYSEQEFLAKYIPNsRLEKIESPEGHDAF 449
                    ************************************************9********************************999************ PP

                    HHS CS
  Abhydrolase_1 254 leg 256
                    l++
     CCD25745.1 450 LLE 452
                    987 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   6.6e-09     4e-05       1     127 [.      67     219 ..      67     299 .. 0.50

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 6.6e-09
                    EEEE--GC........GCHHHH....HHHHCCTCEEEEE--TTST............S-....GGCS--HHHCHHH....HHHHCCTT..TTSE.E CS
  Abhydrolase_6   1 vlllHGagss...assWlvapL....aallaagvhvlapDlpGhG............rs....dpppldledladl....aalldelaagggpv.v 68 
                    ++ +H++ +s   a+ W  +pL    +a+ ++++  +++ l ++G            +s     +p + l+ ++d+    + +ld+l+   + + +
     CCD25745.1  67 LVICHALTGSsdvADWW--GPLlgdnLAFDPSRF--FIVCLNSMGspygsfsplsinEStgerYGPEFPLCTVRDDvrahRIVLDSLG--VKSIaC 156
                    68889855553545555..466677789999999..5566655552222433333331122223333444445555443244888885..56668* PP

                    EEEETCHHHHHHH.HHHCC.....EE.EEES-..----TTT.S----TTHHHHHHTT-C..CCCHCC CS
  Abhydrolase_6  69 lvGHSlGGalala.aapla...lvvg.vlldppptalpagl.laaalelllallallrl..lawlsr 127
                    ++G S+GG+lal+ +a+      v+  v+l++   +++++     + e  ++ + + ++  +++ s+
     CCD25745.1 157 VIGGSMGGMLALEwTAM-YgkeYVRNlVALAT---SARHSAwCISWSEAQRQSIYSDPKymDGYYSL 219
                    *************4444.35973333577777...33333322222222222222222222111111 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.3e-05      0.14      77     112 ..     154     190 ..     129     267 .. 0.81
   2 ?   -3.0   0.0       0.6   3.6e+03     184     220 ..     399     435 ..     396     443 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.3e-05
  Hydrolase_4  77 plfllGhSmGGliallyllrypdkva.glilsaPalk 112
                     ++G SmGG++al+++++y +++   l+  a+  +
   CCD25745.1 154 IACVIGGSMGGMLALEWTAMYGKEYVrNLVALATSAR 190
                  56799*************9999865558888887665 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.6
  Hydrolase_4 184 eeraakitlPllllhGeaDkvvdpeasrelyerlgsk 220
                  e+  ++i+ P l++  ++D +  +++++ l++ ++ +
   CCD25745.1 399 EKVLEDIKQPSLIIGIKSDGLFTYSEQEFLAKYIPNS 435
                  5667889999999999999999999998888887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1089  (0.0607396); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 3526.99
//
Query:       CCD25746.1  [L=1210]
Description: hypothetical protein NDAI_0F04280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-10   39.2   0.3    1.2e-05   25.7   0.0    2.7  2  PH           PH domain


Domain annotation for each model (and alignments):
>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   6.8e-10   1.2e-05       3     102 ..      77     195 ..      75     198 .. 0.72
   2 !   10.8   0.1   3.1e-05      0.56       4      59 ..     234     296 ..     231     334 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 6.8e-10
                 EEEEEE.....EETSSSSC.SEEEEEEEEETTEEEEESST..TCTTESSEEEEEESTTEEEEEEEC..TT.SSSSTSEEEE.........EESTSSS.T CS
          PH   3 keGwLl.....kkgsgkkk.swkkrwfvLkdsellyyknd..ksekdkepkgsislsncevvevva..te.dpkrkfcfel.........riverng.s 80 
                 ++G Ll     k ++++++ +wk+ + vL +++l+++++   +s ++++  +s+  + + +  ++a  ++ dpk++++            ++++    +
  CCD25746.1  77 HDGVLLvlqdlKNDGTPASrTWKEFYGVLIGTQLALWDAAelSSTPNSNELKSLASKPTYINFTDAilKPlDPKNDNVVTQnnqqlanilVVST--TlK 173
                 66775555555556666669********************887777777777788887777777779844466666666664444444333332..245 PP

                 EEEEEEESSHHHHHHHHHHHHH CS
          PH  81 rtyllqasseeerkeWikaiqs 102
                 ++++lq s+ e+ ++W +ai+ 
  CCD25746.1 174 NRFFLQYSNRESFNQWHAAIRL 195
                 ********************86 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 3.1e-05
                 EEEEEEETSSSSCSEEEEEEEEETTE.......EEEESST.TCTTESSEEEEEESTTEEEEEEE CS
          PH   4 eGwLlkkgsgkkkswkkrwfvLkdse.......llyyknd.ksekdkepkgsislsncevvevv 59 
                 e w++ + ++    wk++++v+++ +       + +y+nd k++k+++++++i+ + +  v + 
  CCD25746.1 234 EDWVSVRFGTGM-PWKRCYAVISQPSskkktgqINFYENDkKIKKSHSMTTVIDAKAIYAVYPS 296
                 566665666555.8*********88899****************************99999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       856  (0.0477439); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 7785.10
//
Query:       CCD25747.1  [L=689]
Description: hypothetical protein NDAI_0F04290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.044   13.5   0.0       0.13   12.0   0.0    1.7  1  Peptidase_C28  Foot-and-mouth virus L-proteinase
       0.14   12.9   0.1       0.14   12.9   0.1    3.4  3  TMEM220        Transmembrane family 220, helix


Domain annotation for each model (and alignments):
>> Peptidase_C28  Foot-and-mouth virus L-proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.4e-05      0.13     118     164 ..     537     584 ..     522     597 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
  Peptidase_C28 118 asrps.evcmvdgtdmcladfhagiflkgqdhavfacvtsdgwyaidd 164
                     s  s  v m+d  d  lad++ g +l    ++v+ cv  +  y+++ 
     CCD25747.1 537 ESINStVVTMIDDIDSTLADIFNGTLLYSPMKTVVGCVIENKLYTVEK 584
                    444441578***********************************9965 PP

>> TMEM220  Transmembrane family 220, helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.6e-05      0.14       4      38 ..       4      38 ..       3      88 .. 0.77
   2 ?   -0.1   0.1      0.17   1.6e+03      44      74 ..     304     336 ..     291     363 .. 0.56
   3 ?   -0.4   0.1      0.22     2e+03      19      60 ..     440     484 ..     434     539 .. 0.40

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
     TMEM220  4 laayvqvNDpDpelWvtvYllaallcllaalgaav 38
                l +y+q+ND  +++W+  Y+l+ ll +++++  + 
  CCD25747.1  4 LTTYLQLNDRLSQIWINKYTLVLLLAMVKLFFFSR 38
                679**********************9988877762 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.17
     TMEM220  44 aralalllllaallla..lawlakleavllnes 74 
                   +l++l+++aa+++   +aw ++  ++ l+++
  CCD25747.1 304 TIVLIVLMIVAAVVVLvpIAWNEYRLWSRLTNM 336
                 233333333333333246556555555554444 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.22
     TMEM220  19 vtvYllaallcllaalgaavkesslaralalllllaallla................l 60 
                 +++Y+ +  +  +  +g                ll++++ +                +
  CCD25747.1 440 IVAYITSERALCVLGIGLL-------------ALLVCIFQFimiailrkelnvssgsM 484
                 4444444333333333333.............22222211122222222222223220 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1276  (0.0711696); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 5020.71
//
Query:       CCD25748.1  [L=253]
Description: hypothetical protein NDAI_0F04300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-77  257.8   0.0    6.3e-77  257.6   0.0    1.0  1  EMG1      EMG1/NEP1 methyltransferase


Domain annotation for each model (and alignments):
>> EMG1  EMG1/NEP1 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.6   0.0   3.5e-81   6.3e-77       1     194 []      44     247 ..      44     247 .. 0.97

  Alignments for each domain:
  == domain 1  score: 257.6 bits;  conditional E-value: 3.5e-81
                 EEEEEES--B--GG.....SCGGSB--HHHHCGG.TTSTTGGGSS-CHHHHHHHHHHHCSCHHCTT.EEEEEEETTSEEEEE-TT----SSHHHHHHHH CS
        EMG1   1 ivLeeasLelvkvk.....kkseqLLnsddhkkilkklkreakeaRpDIvHqcLlalldspLnkagllqvyihttknvlIevnpqtRiPrtfkrFagLm 94 
                 +vL+ asLe+ k +      +++ LLn+ddh+ +lkk++r+ +eaRpDI+HqcLl+lld p+nkag+lqvyi+t+++ lIevnp++RiPrtfkrF+gLm
  CCD25748.1  44 VVLAMASLETHKISssgpgGDKYALLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDAPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLM 142
                 89***********9899999******************************************************************************* PP

                 HHHHCCSEEEETTEE.SCEEEECS-HHHHCCC.SEEEEE-TTSEE-..................EEEE-SSSS......---HHEEESSSS---HHHHH CS
        EMG1  95 vqLLkklsirategeekLlkviknpitdhlppgskiillsesaekklvdleefv.....vkpvvfvigamskgsvki..dykeeeisisnypLsaavvc 186
                 vqLL+klsir+ ++eekLlkviknpitdhlp+++++i+ls +a+  ++++++++     +++v++++gam++g++++  ++++e++ +snypLsa+v+c
  CCD25748.1 143 VQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKITLSYDAP--VIRVQDYIekldkDESVCVFVGAMARGKDNFadEFVDEKVGLSNYPLSASVAC 239
                 ********************************************..789*****9998888************9999999******************* PP

                 HHHHHHCH CS
        EMG1 187 skiltafE 194
                 sk+++  E
  CCD25748.1 240 SKFCHGAE 247
                 ****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2000.14
//
Query:       CCD25749.1  [L=800]
Description: hypothetical protein NDAI_0F04310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.1e-218  725.5  47.5   7.1e-218  725.1  47.5    1.2  1  LCD1      DNA damage checkpoint protein


Domain annotation for each model (and alignments):
>> LCD1  DNA damage checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  725.1  47.5  3.9e-222  7.1e-218       1     613 []      95     798 ..      95     798 .. 0.98

  Alignments for each domain:
  == domain 1  score: 725.1 bits;  conditional E-value: 3.9e-222
                 HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCHHTTTTTT........H.HHH------TT---SSS--........ CS
        LCD1   1 mLrdkLelLeqekekeleklknskkqlkesheeelekLkkevqkleDekkFlenElrslset........k.sqaskksaeedtdnsssvs........ 82 
                 mLrdkL+ L++ekekel ++++++k+lkesh +el+kLk+e+q+leDekkFl +E++s+ ++        + s+++++s+ + +++s+s+s        
  CCD25749.1  95 MLRDKLKVLQSEKEKELINEQSKNKKLKESHLDELNKLKHELQRLEDEKKFLIMENKSSLKSrstvpalsNdSDNNRESSVTLSSESMSASntainnta 193
                 9***********************************************************9988888887567777777777777777777******** PP

                 ........THHHHHHHHH.........HHHTSTTT--......TTHHHHHHHHH---SSSTTTTTTTTSS---..--EEESSS-EEESSS-TTHHHHHH CS
        LCD1  83 ........kKkRKieestaedaslslslkkkviklqk......etslffdslllhkilGsdlttleiLskikl..iedlefkdlkiekgesigksivel 165
                         +K+RKi +++         lkk++i+l++      ets++f++++lh+++G+dl+t+e+Ls+ikl  ie+++fk+++i+kgesigks+++l
  CCD25749.1 194 taiktspsSKRRKIGQTK---------LKKQYIQLNPnrvtpdETSVLFENIMLHRLVGCDLNTIEMLSRIKLeyIENFQFKSFIIPKGESIGKSLISL 283
                 **************9976.........************************************************************************ PP

                 HHHHHHH--HHHHHHHHHHHHHHHHHHHHS-SSS---HHHHHHHHHHHHHTSS-TTT-SSHHHHHHHHHHHHHHH--TTTT--SS--TT----S...-H CS
        LCD1 166 llslkkslrLDklidnlleslaqlikeillskkklklavPFLvsLmhaliiFrpsAvtkkllkdlvsfisdlikkyqhlLkeplkeslldlkve...fq 261
                 +l++kk ++LD++id+lle++a+likei++++++++lavPFLv++m++l++FrpsAv+  +lkdl++f++dlikkyqh+Lk+p ++++ld++++   fq
  CCD25749.1 284 FLRCKKGMKLDNFIDTLLEHIAVLIKEISFHEREFDLAVPFLVVIMFELVNFRPSAVHIFALKDLFYFTCDLIKKYQHVLKKPVRKTPLDMTFGpqiFQ 382
                 ********************************************************************************************888**** PP

                 HHHHHHHHHHHHHHHHHHHHHHHTTS.........-HHHHHHHHHHHHHHS-SSS---....HHHHHHHHHHHHHHHHHHH.................T CS
        LCD1 262 yelidkLiliysfdllEsllrilqlf.........daslikslekvlklsLtisykPenseriNvvfnlveilnilseilv.................l 334
                 ye+id Li+++sfdllE +lrilql+         d++l+ksle++++l+Lt sykP+    iNv++n+ve+lnils+ilv                 +
  CCD25749.1 383 YEFIDLLIVLFSFDLLELSLRILQLHpiseisdflDSKLLKSLEQLFSLTLTLSYKPI----INVIYNTVEMLNILSTILVtaqsdpqnvenaetedpI 477
                 **********************************************************....************************************* PP

                 --HHHHHHHHHTTHHHHT----TTSSSS--..............................----SSS----SSS--S--TTTTGGGTSS-SSS--SS-- CS
        LCD1 335 isskwwafnitklynllnksiinskvflie..............................ltikedfnfygLnRniGnnsdlklieklipedklvsipr 403
                 i+ +ww++++t+lyn+l+k+++n+++++                                lti++++++++L+Rn+Gnn+++++i++li+e+kl++ip+
  CCD25749.1 478 IPPQWWKMSVTRLYNVLSKQVSNHNLYSDIsddeeanvnhssnnnlnnnnnnnmavkndvLTISRFTDLFSLIRNMGNNTIAPFISELISEEKLSGIPE 576
                 ************************8887556789***************************************************************** PP

                 --BTTS------STHHHHHHHHHHGGGGTHHHHHHHHHHHHTT-SHHHHTTHHHHHHHHHHHHHHHHHH...TS--TTHHHHHHHHHHHHHHHHHHHHH CS
        LCD1 404 viskedleeqesfeiesnlEkwlltLklkvlsllenliivkkeisklinkellksllrliskeQellls...gqrsknldlrielieslvkliyylwiq 499
                 visked+  ++ ++i+++lE+w+l+Lk+++l++lenl++v++e+++lin+e+l++l++l+skeQe+++    gq+s+nl lr++++++++ +iy+lw++
  CCD25749.1 577 VISKEDILISDPEKIDFKLERWFLYLKDDILNILENLLMVYPEENTLINGEMLIQLTKLMSKEQEMMIVrhvGQQSTNLGLRCDIVDHILVIIYRLWTD 675
                 ********************************************************************99***************************** PP

                 T-S-------TTTHHHHHHHHHHHHGGGG--.......HHHHHHHHTTHHHHHHHHHHTTSS--S--SS-TTTHHHHHHHHHHHHHHHH-------HHH CS
        LCD1 500 eseelseeiikeleselvvaLsriafgstes.......esaeaakLvdklrelklkdqikvFndalEdrarelneelladlesrlanglevkyeeetve 591
                 + ++lsee+ike+e+elvv+L+++++++t++       e++e+++Lvdk++el+lkdq+ +F+d+lEd++++++++l++dl++r++++++v+y++e++e
  CCD25749.1 676 HYNQLSEENIKEIENELVVSLWKVIVSQTAEkedydakEMNEHRQLVDKFNELSLKDQVLYFDDTLEDIPEYIEQDLKKDLDERCQRIMQVRYRNEYQE 774
                 *****************************999******************************************************************* PP

                 HHHHTTTT..---HHHHHHHHH-X CS
        LCD1 592 lAreiLes..cvslEeaDnLYlnm 613
                 +A++iLes  +vslE++D+LY +m
  CCD25749.1 775 MAKTILESkfLVSLENIDSLYDAM 798
                 **********************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2212  (0.123376); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.31s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 5451.74
//
Query:       CCD25750.1  [L=89]
Description: hypothetical protein NDAI_0F04320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-27   95.1  11.7    3.5e-27   94.3  11.7    1.4  1  Ribosomal_L37e  Ribosomal protein L37e
     0.0077   16.2   1.4      0.012   15.7   1.4    1.2  1  DZR             Double zinc ribbon
  ------ inclusion threshold ------
      0.022   14.9   1.0      0.027   14.5   1.0    1.3  1  SelR            SelR domain
       0.94    8.9   4.8       0.57    9.6   3.1    1.5  2  DUF1258         Protein of unknown function (DUF1258)


Domain annotation for each model (and alignments):
>> Ribosomal_L37e  Ribosomal protein L37e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3  11.7   7.7e-31   3.5e-27       2      54 .]       3      54 ..       2      54 .. 0.97

  Alignments for each domain:
  == domain 1  score: 94.3 bits;  conditional E-value: 7.7e-31
  Ribosomal_L37e  2 kGtssfGkrqkkktHilCrrCgkrsyhvqkktCascGypsaklrkynWsaKak 54
                    kGt+sfGkr ++k+H+lC+rCg+rs+hvqkktCa cGyp+ak+r+ynW+aK+k
      CCD25750.1  3 KGTPSFGKR-HNKSHTLCNRCGRRSFHVQKKTCAGCGYPAAKTRSYNWGAKSK 54
                    9********.****************************************975 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.4   2.6e-06     0.012       7      41 ..      11      44 ..       6      47 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.6e-06
         DZR  7 elppdarfCseCgtk...lkavaaedrCpsCgekvdpe 41
                 ++++   C++Cg +   ++    +++C  Cg+++ ++
  CCD25750.1 11 RHNKSHTLCNRCGRRsfhVQ----KKTCAGCGYPAAKT 44
                55667789*****9955544....89******997665 PP

>> SelR  SelR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   1.0     6e-06     0.027      27      80 ..       8      61 ..       2      83 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6e-06
                TSS--SSCEEEETTTS-EEEECCCCE-STTSSSEESS-STTTTEEEEEEECTTS CS
        SelR 27 yekekekGvyecavcgepLfssetkfdsgcGwpsFaeaikeeavkekkdtslgm 80
                + k ++k    c  cg   f+ ++k  +gcG+p+ ++   +   k k+ t++g+
  CCD25750.1  8 FGKRHNKSHTLCNRCGRRSFHVQKKTCAGCGYPAAKTRSYNWGAKSKRRTTTGT 61
                66778888889**********************987776665555555555554 PP

>> DUF1258  Protein of unknown function (DUF1258)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.1   0.00013      0.57      10      40 ..      10      42 ..       6      54 .. 0.74
   2 ?   -1.1   0.1      0.23     1e+03     220     245 ..      53      80 ..      37      84 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00013
     DUF1258 10 kknfsthkfcnkcGkvvak..sekcelcggkva 40
                k +  +h++cn+cG+   +  +++c  cg + a
  CCD25750.1 10 KRHNKSHTLCNRCGRRSFHvqKKTCAGCGYPAA 42
                566678********9765411566888886655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.23
     DUF1258 220 geerkesrkGslt..vedslngvnGfke 245
                  ++r+++ +G +    + s++ +nGf++
  CCD25750.1  53 SKRRTTTGTGRMRylKHVSRKFKNGFQS 80 
                 3334444445443114567888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 705.53
//
Query:       CCD25751.1  [L=657]
Description: hypothetical protein NDAI_0F04330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00017   21.9   0.0     0.0007   19.9   0.0    2.1  1  FHA       FHA domain
  ------ inclusion threshold ------
       0.83    9.4   6.2        5.4    6.7   6.2    2.2  1  DUF4769   Domain of unknown function (DUF4769)


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   7.8e-08    0.0007       3      45 ..     106     149 ..     104     169 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 7.8e-08
                 EESS.TTSSEETTSTT.STTTEEEEEEETTCEEEEEEEESSSSSE CS
         FHA   3 iGRs.sdcdivlddps.iSrkHalikfdkgsgkvyleDlgSknGt 45 
                 iGR+ s c++ l++++ iSr+Ha i++  + +++ le  g +n +
  CCD25751.1 106 IGRKhSVCQFLLPSKRnISRQHAFISYIAKGNQIQLECNG-TNSI 149
                 9***888******9777********999998899999855.7765 PP

>> DUF4769  Domain of unknown function (DUF4769)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   6.2   0.00061       5.4     126     201 ..     458     569 ..     358     581 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00061
     DUF4769 126 v....................................leamqpllepsellstalvtlakeeekedadasedkgvtvlgilqasgikaqsllerlGqne 188
                                                       ++ + ++++  +++ + v+  +++ ++ +++ ++ ++ +lg l+++gi+ q l   l  + 
  CCD25751.1 458 HddivhektslfvgtdskqenfnnekinlskkraieeDQVSNRIKKSRSVVNFEDVSSDHNTGETATVSEKEVDLDILGSLRSQGIQYQELQYILSNHL 556
                 233344444444444444444444444444444443336777888888899999999988888888999999999*****************9999999 PP

     DUF4769 189 eldavqrllliql 201
                 ++  vq++ l ql
  CCD25751.1 557 AFTNVQQVPLSQL 569
                 9999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 4615.37
//
Query:       CCD25752.1  [L=454]
Description: hypothetical protein NDAI_0F04340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-65  216.9   0.0    1.6e-64  216.1   0.0    1.4  1  S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal 
    4.6e-45  152.3   0.2    4.6e-45  152.3   0.2    1.9  2  S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal 
    1.4e-44  151.2   0.0    4.1e-44  149.7   0.0    1.8  1  S-AdoMet_synt_M  S-adenosylmethionine synthetase, central dom
  ------ inclusion threshold ------
       0.03   13.1   0.1      0.064   12.0   0.0    1.5  1  AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synt


Domain annotation for each model (and alignments):
>> S-AdoMet_synt_C  S-adenosylmethionine synthetase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.1   0.0   3.5e-68   1.6e-64       1     138 []     311     448 ..     311     448 .. 1.00

  Alignments for each domain:
  == domain 1  score: 216.1 bits;  conditional E-value: 3.5e-68
                      S-TTTTS-EETTS-TTTTTTTTSS---S---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEEEEE-S-BSS-HHHH CS
  S-AdoMet_synt_C   1 iGgpkgdaGltgrkiivdtYgglaahgggafsgKdptkvDrsaayaaryvaknlvaaglakkvevqlsYaigvaepvsisvetfgtekvseeei 94 
                      iGgp+gdaGltgrkiivd+Ygg+++ gggafsgKd++kvDrsaayaar+vak+lvaagl+k+v+vq sYaig+aep+s++v+t+gt++ s+eei
       CCD25752.1 311 IGGPQGDAGLTGRKIIVDAYGGASSVGGGAFSGKDYSKVDRSAAYAARWVAKSLVAAGLCKRVQVQFSYAIGIAEPLSLHVDTYGTSTKSDEEI 404
                      8********************************************************************************************* PP

                      HHHHHHH----HHHHHHHHTTTSS--TGGGSS-SSS--T-TTS. CS
  S-AdoMet_synt_C  95 aeivkevfdlrpaaiieeldLkkpiykktaayghfgreelpwek 138
                       +i+k++fdlrp+ ++++ldL +piy  ta+yghf+++++pwe+
       CCD25752.1 405 IAIIKKNFDLRPGVLVRDLDLARPIYLPTASYGHFTNQDYPWEQ 448
                      *******************************************7 PP

>> S-AdoMet_synt_N  S-adenosylmethionine synthetase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   0.2     1e-48   4.6e-45       2      99 .]      77     174 ..      76     174 .. 0.99
   2 ?   -1.7   0.1       1.1   4.9e+03      12      31 ..     267     291 ..     261     303 .. 0.52

  Alignments for each domain:
  == domain 1  score: 152.3 bits;  conditional E-value: 1e-48
  S-AdoMet_synt_N   2 ylftsesVseGHPDkvadqisdaildailkedpkarvacetlvttglvvvageittkakvdiekivrevikeigYekeelgfdaktcevlvale 95 
                      +lftsesV eGHPDk++dq+sdailda+l++dp ++vacet+++tg+++v+geittka +d++k+vr++ik+igY+ +e+gfd+ktc+vlva+e
       CCD25752.1  77 FLFTSESVGEGHPDKICDQVSDAILDACLAQDPLSKVACETAAKTGMIMVLGEITTKAVIDYQKVVRDTIKQIGYDASEKGFDYKTCNVLVAIE 170
                      89******************************************************************************************** PP

  S-AdoMet_synt_N  96 eqsp 99 
                      +qsp
       CCD25752.1 171 QQSP 174
                      ***7 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.1
  S-AdoMet_synt_N  12 GHPDkva.....dqisdaildailk 31 
                       H D ++      +i  +i+d+++ 
       CCD25752.1 267 QHADSIStedlrSKIKTEIIDKVIP 291
                      4444433111113455555555555 PP

>> S-AdoMet_synt_M  S-adenosylmethionine synthetase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.7   0.0   9.2e-48   4.1e-44       2     120 .]     189     309 ..     188     309 .. 0.96

  Alignments for each domain:
  == domain 1  score: 149.7 bits;  conditional E-value: 9.2e-48
  S-AdoMet_synt_M   2 igAgDqGimfGYAtdeteelmPlpillahklaerlaelrkegeleylrpDaKsqvtveYee...elkpvrvdtvvistqhdeevsqeklredlk 92 
                      +gAgDqGimfGYAtdet+e +Pl+illahkl   +a++r++g+l+++rpD+K+qvtveYe+   +  p+r+dtvv+s+qh++++s+e+lr+++k
       CCD25752.1 189 LGAGDQGIMFGYATDETPEGLPLTILLAHKLNMAMADARRDGSLDWIRPDTKTQVTVEYEDdngRWVPQRIDTVVVSAQHADSISTEDLRSKIK 282
                      7**********************************************************65667889**************9************ PP

  S-AdoMet_synt_M  93 ekvikkvlkeelldekktkllinptGkF 120
                      +++i+kv++++++d+ +tk++i+p+G+F
       CCD25752.1 283 TEIIDKVIPADMMDA-DTKFYIQPSGRF 309
                      **********99987.6**********9 PP

>> AdoMet_Synthase  S-adenosylmethionine synthetase (AdoMet synthetase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.4e-05     0.064      15      42 ..      75     102 ..      62     117 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.4e-05
                      TSSEEEEEEE-TTSHHHHHHHHHHHHHH CS
  AdoMet_Synthase  15 eqevEivErKGiGHPDsiaDgiaeavsr 42 
                      ++ +   E  G GHPD+i+D++++a+  
       CCD25752.1  75 KRFLFTSESVGEGHPDKICDQVSDAILD 102
                      5555566889**************9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       630  (0.0351386); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3281.32
//
Query:       CCD25753.1  [L=300]
Description: hypothetical protein NDAI_0F04350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-23   81.7   0.6      4e-23   81.7   0.6    1.9  2  PAP2      PAP2 superfamily
     0.0028   17.4   0.3     0.0028   17.4   0.3    2.4  3  PAP2_3    PAP2 superfamily
  ------ inclusion threshold ------
      0.041   14.4   5.6      0.041   14.4   5.6    3.1  4  PAP2_C    PAP2 superfamily C-terminal
       0.31   11.5   0.0       0.31   11.5   0.0    1.6  2  PBP1_TM   Transmembrane domain of transglycosylase PBP1 at N-


Domain annotation for each model (and alignments):
>> PAP2  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.44     2e+03     113     113 ..      67      67 ..       9      87 .. 0.49
   2 !   81.7   0.6     9e-27     4e-23       2     134 ..     139     283 ..     138     285 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.44
        PAP2 113 v 113
                 +
  CCD25753.1  67 I 67 
                 2 PP

  == domain 2  score: 81.7 bits;  conditional E-value: 9e-27
        PAP2   2 llalllalalaalltsvlKdlvgrpRPfflaeetkldtqvstletses................keakesfPSgHsafafalalllalllrrkrkkigl 84 
                 l++ll ++++ ++ t+ lK ++g  RP+fla++++   + +++ +  +                 e+ +s PSgHs+f +a++ +l+ +  + +     
  CCD25753.1 139 LICLLMVITINGAMTNSLKLIIGNFRPDFLARCQPKPLD-DEQASV-DgyygldicqqpnkyilIEGLKSTPSGHSSFITAGLGFLFVWQSKFIVG--H 233
                 567888999999999******************986555.222222.235679**9988888888888888*****************99999999..7 PP

        PAP2  85 vllalillllavlvalsRlylgvHflsDvlaGlliGialaalayrlvqkk 134
                  l ++++l+l+v v++ R+ +++H++ Dvl G l+G++++++++r v++k
  CCD25753.1 234 YLKHVWCLVLIVIVMIERITDHRHHWYDVLSGSLLGWLIIWACWRNVFTK 283
                 9999*****************************************99886 PP

>> PAP2_3  PAP2 superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       0.7   3.2e+03      36      52 ..      14      30 ..       4      40 .. 0.53
   2 ?    0.1   0.0      0.13   5.6e+02     141     164 ..     122     145 ..      66     160 .. 0.56
   3 !   17.4   0.3   6.3e-07    0.0028     122     189 ..     202     274 ..     167     275 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.7
      PAP2_3 36 Yaslhfqvtllvlvllf 52
                Y++ +++++l ++++++
  CCD25753.1 14 YSTKYIVIFLCTIFFIY 30
                44444444444444443 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.13
      PAP2_3 141 alwrlrrkrllrvlalllnvlmiv 164
                   +r+ ++++++ l l l +l++v
  CCD25753.1 122 SSVRWVQNKYVHFLHLSLICLLMV 145
                 334444444333333333333322 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 6.3e-07
      PAP2_3 122 nglaafPSlH.....vawallvalalwrlrrkrllrvlalllnvlmivatvatgnHYlvDviaGvalalvaia 189
                 +gl + PS H     +++ +l+++    +  + l +v +l+l v++++  ++   H + Dv+ G +l++++i+
  CCD25753.1 202 EGLKSTPSGHssfitAGLGFLFVWQSKFIVGHYLKHVWCLVLIVIVMIERITDHRHHWYDVLSGSLLGWLIIW 274
                 6778899999665556778888888888888888899999999***************************998 PP

>> PAP2_C  PAP2 superfamily C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.4         1   4.5e+03      34      43 ..      18      27 ..       7      33 .. 0.45
   2 ?   -1.4   0.2       0.8   3.6e+03      59      72 ..      68      81 ..      53      84 .. 0.67
   3 ?   -0.2   0.3      0.34   1.5e+03      19      41 ..     126     146 ..     118     154 .. 0.46
   4 ?   14.4   5.6   9.2e-06     0.041       8      70 ..     209     274 ..     208     279 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
      PAP2_C 34 villllallg 43
                +i+++l+ ++
  CCD25753.1 18 YIVIFLCTIF 27
                2332222222 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.8
      PAP2_C 59 llglyittlvflly 72
                +l+++i+++v+++y
  CCD25753.1 68 ILSVLISSIVVFWY 81
                45555555555444 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.34
      PAP2_C  19 lfileyspkklailkvillllal 41 
                 ++  +y +  +  l++i+ll+++
  CCD25753.1 126 WVQNKYVHFLH--LSLICLLMVI 146
                 33333333333..3333333333 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 9.2e-06
      PAP2_C   8 SGHtvvltlavlfileyspkkla...ilkvillllallglfliiasrkHYtvDVllglyittlvfl 70 
                 SGH+ ++t  + f++   +k ++   + +v++l+l ++ ++  i  + H+  DVl g ++  l+ +
  CCD25753.1 209 SGHSSFITAGLGFLFVWQSKFIVghyLKHVWCLVLIVIVMIERITDHRHHWYDVLSGSLLGWLIIW 274
                 99*9999876555554444444455578888888888889999**************999888765 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.8e-05      0.31      29      76 ..      94     141 ..      86     148 .. 0.53
   2 ?   -4.7   1.3         4   1.8e+04      72      82 ..     238     248 ..     236     249 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.8e-05
     PBP1_TM  29 rrrdddyddeyddeedDdddddeeeevprkgkkkkpprkkrrwlwlli 76 
                 +r+++++ + ++ ++dDddddd++ e     +  +++  +   l+l+ 
  CCD25753.1  94 SRYNNNIHEAIEASYDDDDDDDNDMETYSSVRWVQNKYVHFLHLSLIC 141
                 356777778788888888777766555444333332223333333333 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 4
     PBP1_TM  72 lwlliklflvl 82 
                  w l+ +++v+
  CCD25753.1 238 VWCLVLIVIVM 248
                 46666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       840  (0.0468515); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2280.84
//
Query:       CCD25754.1  [L=974]
Description: hypothetical protein NDAI_0F04360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-38  129.4   2.2    4.5e-38  129.4   2.2    2.1  2  PSP1      PSP1 C-terminal conserved region


Domain annotation for each model (and alignments):
>> PSP1  PSP1 C-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.5         1   1.8e+04      14      28 ..     391     405 ..     385     421 .. 0.51
   2 !  129.4   2.2   2.5e-42   4.5e-38       1      86 []     786     885 ..     786     885 .. 0.99

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1
        PSP1  14 tnlenkqdeekalhi 28 
                 ++++n+++++k    
  CCD25754.1 391 QQQQNQAHNQKQATS 405
                 444444433332222 PP

  == domain 2  score: 129.4 bits;  conditional E-value: 2.5e-42
        PSP1   1 kqvlrlatpedvstnlenkq.deekalhiaqeklkeln.............lnmklldaefqfdrkkltfyYvaeervDFreLvkeLfkfyktRIwLca 85 
                 kqvlr+atp++++ nl+ k+ de+kal+i+++kl +l+             ln+k+l+ efqfdrkkltfyYv+eer+DFr+L+keLfkfyktRIwLca
  CCD25754.1 786 KQVLRFATPWEIKVNLNYKFqDELKALQIVKLKLDSLTnnnsdytttggkkLNIKILNSEFQFDRKKLTFYYVCEERNDFRDLIKELFKFYKTRIWLCA 884
                 89************************************************************************************************9 PP

        PSP1  86 i 86 
                 i
  CCD25754.1 885 I 885
                 8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (974 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2425  (0.135256); expected 358.6 (0.02)
Passed bias filter:                      306  (0.0170673); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 6184.05
//
Query:       CCD25755.1  [L=435]
Description: hypothetical protein NDAI_0F04370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.9e-28   97.5   0.0      9e-26   90.9   0.0    2.2  1  Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase famil


Domain annotation for each model (and alignments):
>> Oxidored_FMN  NADH:flavin oxidoreductase / NADH oxidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0     5e-30     9e-26       2     255 ..      70     304 ..      69     374 .. 0.76

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 5e-30
                   CCS-EEETTEEESSSEEE----S-TTTTTCS..HH.HHHHHHHHHHHHTT-SEEEEEEEESSCCC-SCTTSEE-SSGGG.HHHHHHHHHHHHHTT-E CS
  Oxidored_FMN   2 LFkPikignmtLknRivmapmtrlraldkgn.vle.dlaaeyysqraeipvtliiteaafvnpksggfdnapgiwdeeq.ieewrklteavhengsk 95 
                   LF+P+ki+n t+ nRi+++pm+ ++ ++ +n +++ +++++y    + ++ +lii+e+++v+p + +++n+ g+w+ eq ie+ +k+++  h+ +s+
    CCD25755.1  70 LFQPFKIKNLTVPNRIAVSPMCLYSTSKIENyKPTnFHQIHYG-ALSLKGPGLIIVECTAVSPRGLITPNDLGLWSYEQaIEHRNKIVNFAHDCNSL 165
                   9***********************9887655267745555555.5899999*************************9884677779*********** PP

                   EEEEEE--GGGS..SCSTCEC..SS.ESSSSSTTT-.S...CS-EE--HHHHHHHHHHHHHHHHHHHH.TT-SEEEEEE-CTSHHHHHH-TTT---- CS
  Oxidored_FMN  96 vvvqlwhlGreakseyladqevdspsdpvaldaqeeesaeevykkeltkeeikqliqefveAAkraie.AgfDgVeihganGYLlnqFlspksnkrt 191
                   +++ql +l      e +++++ ds s    +d+                   + + +e+++ Ak+ai+ A++D +ei g +G++ +   ++  n+  
    CCD25755.1 166 IGIQLGYLDNLHVGEGRETKQ-DSTS----FDDL-----------------LESIRKEWTDSAKLAIDvAKYDFIEIQGDHGHIFDSI-NNIDNNTP 239
                   *****9998888777777777.3333....3333.................2345589**************************9985.56666655 PP

                   STTSSSHHHHHHHHHHHHHHHHHHH-SSS.EEEEEECE--STTS--HHHHHHHHHHHCHCCEEEE CS
  Oxidored_FMN 192 DeygGslenRarFllevvdaVkeavgeer.vgyRlSpedvvekgldfaetaqkivllkelekrlk 255
                    +   +++ +   +l ++d+++ ++ ++  ++yR+S+++   +++++a   +k+   +++++ ++
    CCD25755.1 240 LKLASNDNAKFCLVLKIIDSIRSVIPKHVpLFYRMSASQKAPQKEKGAKDHEKLWDFDDTIEFAI 304
                   666666666777789***********************999887776655344444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       363  (0.0202465); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3056.77
//
Query:       CCD25756.1  [L=171]
Description: hypothetical protein NDAI_0F04380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       260  (0.0145016); expected 358.6 (0.02)
Passed bias filter:                      212  (0.0118244); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 1233.84
//
Query:       CCD25757.1  [L=667]
Description: hypothetical protein NDAI_0F04390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   1.9e-128  429.1  37.2   2.4e-128  428.8  37.2    1.0  1  AA_permease    Amino acid permease
    4.4e-30  104.8  33.7    5.4e-30  104.6  33.7    1.1  1  AA_permease_2  Amino acid permease
  ------ inclusion threshold ------
       0.18   10.6   0.3       0.41    9.4   0.3    1.5  1  DUF4781        Domain of unknown function (DUF4781)
        0.2   11.3   5.1       0.31   10.7   5.1    1.2  1  SHE3           SWI5-dependent HO expression protein 3


Domain annotation for each model (and alignments):
>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.8  37.2  5.3e-132  2.4e-128       1     474 [.     157     620 ..     157     624 .. 0.98

  Alignments for each domain:
  == domain 1  score: 428.8 bits;  conditional E-value: 5.3e-132
  AA_permease   1 hvlvialggviGtglfvglgvvlsqaGplgallayllagvviflvmlslgeiatngp.ksggfytyasrflgpelGfviGlnylfswitvlaleltaa 97 
                  hvl+i+lg  iGtgl+vglg+ l +aGp+g+ll++ ++g++++++++++ge+a++++  +ggf++y s  ++p++Gf++++ y ++w+ v +lel++a
   CCD25757.1 157 HVLMISLGTGIGTGLLVGLGSSLVAAGPAGLLLGFGIMGTCLYCIIQAVGEMAVAYSdLVGGFNAYPSFLVDPAFGFSVAWVYALQWLCVCPLELVTA 254
                  9************************************************************************************************* PP

  AA_permease  98 siliqfwelvtdlpkawvtgavflvvlliinlvg.vkvygeaefilalikiiaiiafiivgiillaggkpnkga.gfrflgdngsifknnlppgfake 193
                  s++i++w  +t++   +v++++f+v++l+in+vg + +y+eaefi++++ki+++i+f+i+gii+++gg++n+g+ g+++++++g++  ++ ++     
   CCD25757.1 255 SMTIKYW--TTKVD-PDVFVIIFYVLILAINIVGgAAGYAEAEFIFNSCKILMMIGFFILGIIIICGGAGNDGYiGGKYWHEPGAFRGEHAIDR---- 345
                  *******..99999.9*****************64899***********************************************999999999.... PP

  AA_permease 194 eegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasa..aspfvifikesgvsvla 289
                      fk++++ +v ++faf   e ++++a+E ++P+k+iP a +++++ri+ +++ s+ ++g+lvp+++++ll +s  +  asp+v++ + +gv+v++
   CCD25757.1 346 ----FKGVMATLVNAAFAFGMSEFIGVTASEQSNPRKAIPSAAKKMLYRIVCMFLASITIVGFLVPYDSDQLLGSSGGGvkASPYVLAVSTHGVKVVP 439
                  ....**********************************************************************8887799***************** PP

  AA_permease 290 plinaviltaalssansslysasRvlyslakdglaPkvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwlliilsy 387
                  ++inavil+++ls+ans+ ys+sR+l sla++g+aPk++ +++++g+Pl+++++ ++++++a+ ++s + +  +vf +llais+l++l++w++i++s+
   CCD25757.1 440 HFINAVILISVLSVANSAFYSSSRMLLSLAEQGYAPKIFCYIDREGRPLVGMAMASLFGVIAFCATSPKED--EVFVWLLAISGLSQLFTWIAICVSH 535
                  ***************************************************************88888888..************************* PP

  AA_permease 388 lrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknkr 474
                  +rfR+a+++qg+si elgf+++++ +g+ ++ ++++ il++++++a+++   g+++++a +f++ yl ++++l++++g+k+++kn+ 
   CCD25757.1 536 VRFRRAMHVQGKSIGELGFRSQVGAWGSSYAAIMMVCILIAQFWVAIAP--IGEGKLDAKNFFENYLAMPILLALYFGYKIYTKNWT 620
                  *********************************************9999..555669****************************97 PP

>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6  33.7   1.2e-33   5.4e-30       4     405 ..     156     583 ..     153     608 .. 0.76

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 1.2e-33
  AA_permease_2   4 lsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaElssa.lprsgGiyvytkaafgkkvaflsawfnwfayvpvlasil 96 
                    + ++++++g+ ig+g +v    ++ ++gpa +l ++++++ ++++ + +  E++ a     gG   y + +  + ++f +aw ++++++ v+++ l
     CCD25757.1 156 RHVLMISLGTGIGTGLLVGLgsSLVAAGPAGLLLGFGIMGTCLYCIIQAVGEMAVAySDLVGGFNAYPSFLVDPAFGFSVAWVYALQWLCVCPLEL 251
                    67889999999999999986665556****************9**********9666************************************999 PP

  AA_permease_2  97 svaasyllnalgpdlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl......stetdt...ff 183
                    + a  ++ ++   +++++ +++++++++il++ +   + g  ++a + +i   +kil ++i ++ilg+i+++gg  ++       +   +    f 
     CCD25757.1 252 VTASMTIKYW-TTKVDPD-VFVIIFYVLILAINI---VGGAAGYAEAEFIFNSCKIL-MMIGFFILGIIIICGGAGNDGyiggkyW---HEpgaFR 338
                    8888888885.5688886.344444444444333...35777889999999999**5.6666667*********999887774442...3333222 PP

  AA_permease_2 184 pn.gwp...gvllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflg...vvpddeianlsn...lgsvaalffeav 267
                    ++   +   gv+++l  ++++f+  e++ + ++e+ +  k +p a+   +l+ +v+ +l +i+++g       d++  +s+     s++ l + + 
     CCD25757.1 339 GEhAIDrfkGVMATLVNAAFAFGMSEFIGVTASEQSNprKAIPSAAKK-MLYRIVCMFLASITIVGflvPYDSDQLLGSSGggvKASPYVLAVSTH 433
                    224333333589999*******************66663789999843.34444444444444444100333355533333222333577777787 PP

  AA_permease_2 268 ggkvvaiivvilialsllgaintavigssrvlealardgvlPrffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyl 363
                    g kvv ++++++i +s+l  +n+a+++ssr+l +la++g+ P+ f  +++ g+p++++    ++ +i +++++   ++ + +ll++s l+ ++ ++
     CCD25757.1 434 GVKVVPHFINAVILISVLSVANSAFYSSSRMLLSLAEQGYAPKIFCYIDREGRPLVGMAMASLFGVIAFCATSPKEDEVFVWLLAISGLSQLFTWI 529
                    899**************************************************************99998887655999***************** PP

  AA_permease_2 364 lliigalilrkkrphlkr.............pgkilvaiigalfllfllvalffp 405
                    ++ ++ +  r+ ++++++             +g    a+i+++++l++ ++ ++ 
     CCD25757.1 530 AICVSHVRFRRAMHVQGKsigelgfrsqvgaWGS-SYAAIMMVCILIAQFWVAIA 583
                    ****************888888887777443333.34444444444444444433 PP

>> DUF4781  Domain of unknown function (DUF4781)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.3   9.2e-05      0.41     109     178 ..     431     505 ..     414     507 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 9.2e-05
     DUF4781 109 a....latP..vaapvllaalvvgvgsavYstgRsiqrLvDrstHeesisltdrearnswLgvaagvvglgaagat 178
                 +     ++P  ++a++l+++l v + sa Ys +R    L++++   +  +  dre r+   + +a+++g+ a  at
  CCD25757.1 431 SthgvKVVPhfINAVILISVLSV-ANSAFYSSSRMLLSLAEQGYAPKIFCYIDREGRPLVGMAMASLFGVIAFCAT 505
                 3344445667789******6665.589********************************************99988 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   5.1   6.9e-05      0.31      82     176 ..      31     130 ..      11     160 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.9e-05
                 HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....HHHHHHHHHHH.HHHHSSSXXXXXXXXXXX.XXXXXXXXXX CS
        SHE3  82 veelklekkqlkkrlenssaseteleeelerlkvqYdalvdsqkeYkehYqqei....eeLkesleklk.lenekqleelqerissndkdidtkldsyn 175
                  +  + e+k+lk + ++ s ++++  e +e+ k+q   + ds     + Y+q+i    ++ ++ ++++k  e ++  e+ +++i+sn+  id+++ s++
  CCD25757.1  31 DNVTRYEMKNLKPKEKEISTEQENEVEYFENTKIQEGGIDDSTITQTNDYEQNItkptSRVRNFIDSFKpAEVKNSPEKDTASITSNEMMIDEEILSLS 129
                 34456789999999999998888889999*****9766555555555555555522217799999999945777888999**************99998 PP

                 X CS
        SHE3 176 n 176
                 n
  CCD25757.1 130 N 130
                 7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1288  (0.0718389); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 4600.51
//
Query:       CCD25758.1  [L=215]
Description: hypothetical protein NDAI_0F04400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-21   74.1   7.8    4.6e-20   71.7   7.8    2.0  1  DUP       DUP family
  ------ inclusion threshold ------
      0.014   15.1   0.7      0.022   14.4   0.7    1.3  1  DUF4131   Domain of unknown function (DUF4131)
      0.015   15.1   0.1      0.015   15.1   0.1    1.9  2  LapA_dom  Lipopolysaccharide assembly protein A domain
       0.14   11.5   0.2        0.2   11.1   0.2    1.2  1  DUF92     Integral membrane protein DUF92


Domain annotation for each model (and alignments):
>> DUP  DUP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   7.8     1e-23   4.6e-20      13     100 ..      97     190 ..      61     192 .. 0.81

  Alignments for each domain:
  == domain 1  score: 71.7 bits;  conditional E-value: 1e-23
         DUP  13 llilllva.......lvlqnlrafsksvsdekfkikllseiikekpavdakeWdtIaknmNqYLfenklwktpyfFydgedCeefFrklilepls 100
                 +++l+++            +lr+ +k+++ ++ +ikll ++i+ kp+   ++Wd+Ia +mN+YL+++++ +tpyfFydg+++++ Frk++ epl 
  CCD25758.1  97 CFLLFFLLgsflsllEHNSKLRTKTKKLNSQN-QIKLLLDVIECKPNASSSSWDIIACHMNEYLYSEGAHNTPYFFYDGSETYWWFRKYVFEPLD 190
                 33333332334443334456666777777777.9********************************************************99975 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.7   4.9e-06     0.022       6      81 ..      70     143 ..      65     148 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 4.9e-06
     DUF4131   6 alvllalllllllllllllrrrprrrvllllllllllallgfalrapqpnandlsqllesgqeviveG.vvaslpel 81 
                 ++v+++ll+ll+++ ++l     +  + +++ll++ll+++  +l+  ++ +++  +l++ ++++ +   v++ +p+ 
  CCD25758.1  70 SAVFFILLILLIFTFVCLR--IFTIVYVGCFLLFFLLGSFLSLLEHNSKLRTKTKKLNS-QNQIKLLLdVIECKPNA 143
                 4555556666666666652..44555556666666666666666666666666666666.44444444266666665 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.3      0.48   2.1e+03      22      26 ..      77      81 ..      63      94 .. 0.58
   2 ?   15.1   0.1   3.3e-06     0.015      21      60 ..      92     128 ..      89     134 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.48
    LapA_dom 22 lllva 26
                l+l+ 
  CCD25758.1 77 LILLI 81
                11111 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.3e-06
    LapA_dom  21 llllvafgiGallgwllslwsylrlrrelrrlkkkikkle 60 
                 ++ +++f++ +llg +lsl+    ++++lr ++kk++ + 
  CCD25758.1  92 IVYVGCFLLFFLLGSFLSLL---EHNSKLRTKTKKLNSQN 128
                 7889***************8...99999999998888765 PP

>> DUF92  Integral membrane protein DUF92
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.2   4.4e-05       0.2      26      73 ..      80     127 ..      63     140 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 4.4e-05
       DUF92  26 lvgvlialaplgllffllllvFfllgslltkvkkkvKakleeekegaR 73 
                 l+ ++++l  ++++++ ++l+Ffllgs l+ ++++ K +++++k ++ 
  CCD25758.1  80 LIFTFVCLRIFTIVYVGCFLLFFLLGSFLSLLEHNSKLRTKTKKLNSQ 127
                 4445555666777899999******************98777764444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1012  (0.0564449); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1553.04
//
Query:       CCD25759.1  [L=524]
Description: hypothetical protein NDAI_0F04410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-15   57.1   0.1    2.9e-15   56.1   0.1    1.6  1  La        La domain


Domain annotation for each model (and alignments):
>> La  La domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.1   1.6e-19   2.9e-15       1      58 [.     370     427 ..     370     432 .. 0.86

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.6e-19
                 HHHHHHHHHHTT-TTT-HHHHHHHTTSTTS---HHHHHTSSHHHHHHS..SHHHHHHHHH CS
          La   1 ilkQvEfYFSdeNLpkDkFLrkkmdkdpegwVplsliasfkrmkkltk..dveliaealr 58 
                 i + +E+YFSdeNL+kDkFL +k++k  +g+V+l li++f r+ kl+   d   +++a+r
  CCD25759.1 370 IARTIEYYFSDENLSKDKFLISKLSK--NGYVSLYLISKFFRIVKLSFggDPMIVLAAIR 427
                 6789*********************9..9**************99886665556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3044  (0.169781); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                       126  (0.00702772); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.33u 0.34s 00:00:01.67 Elapsed: 00:00:00.50
# Mc/sec: 3132.72
//
Query:       CCD25760.1  [L=521]
Description: hypothetical protein NDAI_0F04420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.039   13.5   0.0      0.083   12.4   0.0    1.5  1  LIM_bind  LIM-domain binding protein


Domain annotation for each model (and alignments):
>> LIM_bind  LIM-domain binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.6e-06     0.083     114     168 ..     422     492 ..     401     506 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 4.6e-06
    LIM_bind 114 egqlrvlf.......dadlkIewlefavrsheeliprsalekklkqllesa.........ssaspkvskkv 168
                 + +lrvl+        +++k++ l    ++ +++i r  le+k+ ++++++         + ++ +vskk 
  CCD25760.1 422 HYTLRVLMhmcdinfRKQMKLDDLTYMSEKIQQWIDRGNLESKILPMSYAVsvvdatrkaKVQDSRVSKKP 492
                 5555555555666669****************************999999987665544422222333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       942  (0.0525406); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3830.14
//
Query:       CCD25761.1  [L=136]
Description: hypothetical protein NDAI_0F04430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-14   54.2   0.0    2.1e-14   53.5   0.0    1.4  1  Glutaredoxin   Glutaredoxin
     0.0014   18.6   0.3     0.0039   17.2   0.2    1.8  2  Thioredoxin_3  Thioredoxin domain
     0.0025   18.0   1.1        1.3    9.1   0.4    2.4  2  Thioredoxin_4  Thioredoxin
     0.0029   17.4   0.2     0.0067   16.2   0.2    1.7  1  Thioredoxin_9  Thioredoxin
     0.0057   17.1   0.0     0.0077   16.7   0.0    1.4  1  Thioredoxin_2  Thioredoxin-like domain
  ------ inclusion threshold ------
      0.015   15.7   1.5      0.023   15.1   1.2    1.6  1  Ribosomal_L33  Ribosomal protein L33
      0.016   15.0   0.2      0.025   14.4   0.2    1.2  1  TraF           F plasmid transfer operon protein
       0.02   14.7   0.4       0.27   11.0   0.2    2.2  2  DSBA           DSBA-like thioredoxin domain
      0.039   14.4   0.0      0.057   13.8   0.0    1.4  1  DUF836         Glutaredoxin-like domain (DUF836)
      0.045   13.9   0.0      0.093   12.9   0.0    1.5  1  Thioredoxin_7  Thioredoxin-like
      0.053   13.5   0.1      0.064   13.2   0.1    1.3  1  Thioredoxin    Thioredoxin
      0.059   13.0   0.2       0.11   12.1   0.1    1.5  1  DUF953         Eukaryotic protein of unknown function (DUF953


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   1.4e-17   2.1e-14       1      60 []      48     114 ..      48     114 .. 0.88

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 1.4e-17
                   EEEEESTSSHHHHHHHHHH.HHTTGG...EEEEEGCCSH...HHHHHHHHHHTSSSSSEEEETTEEE CS
  Glutaredoxin   1 vvlftkptCpyCkkakrlL.kelgvk...feeidvdkde...eireelkelsgvrtvPqvfidgkhv 60 
                   v++f k++CpyCk+ak +  +e +v+     + d+d ++   ei+++l +++g++tvP+v+i+g+++
    CCD25761.1  48 VIIFAKSYCPYCKAAKHTIfEEINVPkskALVLDLDLMDngqEIQQALLAINGQKTVPHVYINGEFI 114
                   89**************98889999777776666766665668***********************98 PP

>> Thioredoxin_3  Thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.2   1.8e+03      15      28 ..      34      47 ..      24      51 .. 0.61
   2 !   17.2   0.2   2.6e-06    0.0039       4      59 ..      49     113 ..      44     125 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.2
                   HHHHHHHHHCHCCT CS
  Thioredoxin_3 15 klekavkeaaaekg 28
                   ++++ v+++++e++
     CCD25761.1 34 QTVEYVQKLIKENK 47
                   55556666666554 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.6e-06
                    EEE.SSSSTTCHHHHHHHHHHCHCCTCEC......EEECCTTHHHH..HHCT-SSSSEEECTTCE CS
  Thioredoxin_3   4 kvl.gpgCakCpklekavkeaaaekgika......evekvtdfeei..ekygVmsvPalvidgkv 59 
                     ++ ++ C++C++++  + e+++ ++ ka       +++ +++++   + +g  +vP+++i+g++
     CCD25761.1  49 IIFaKSYCPYCKAAKHTIFEEINVPKSKAlvldldLMDNGQEIQQAllAINGQKTVPHVYINGEF 113
                    3443666*****999999999999998888998866777799999888889999*********96 PP

>> Thioredoxin_4  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.4   0.00088       1.3      15      36 ..      46      67 ..      44      72 .. 0.85
   2 !    7.2   0.0    0.0035       5.2     130     160 ..      92     123 ..      72     126 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00088
                   EEEEEEE-TT-HHHHHHHHHHH CS
  Thioredoxin_4 15 vtvieyedlrCphCakfeeeve 36
                   ++vi+++   Cp+C++ + +++
     CCD25761.1 46 NKVIIFAKSYCPYCKAAKHTIF 67
                   579*************999987 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0035
                    HHHH.HHHT--SS-EEEETTEEE-TT--HHHH CS
  Thioredoxin_4 130 skea.kkagiestPtfiingekveepqtyeel 160
                    ++ +   +g +++P ++inge + ++++++++
     CCD25761.1  92 QQALlAINGQKTVPHVYINGEFIGGNSEVQKI 123
                    44444778999************999887765 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   4.5e-06    0.0067      28     103 ..      31     109 ..      20     135 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.5e-06
                    HH---HHHHHT--S-EEEEEE--TT-HHHHHH.HHHHHHHH.HH-TTEEEEEE-HHHHHHHTTTTTT.-SS--SSEEEE CS
  Thioredoxin_9  28 lseeteekiksiekklkilvltedwCgDaavn.vPvlakia.elnpnievkillrdenlelmdqylt.ngaraiPtlii 103
                    +s++t e ++++ k+ k++++++ +C+ + +    ++++i    ++ + +++ l+d+ +e+ +  l+ ng++++P + i
     CCD25761.1  31 VSQQTVEYVQKLIKENKVIIFAKSYCPYCKAAkHTIFEEINvPKSKALVLDLDLMDNGQEIQQALLAiNGQKTVPHVYI 109
                    688899999999999**************765167777887556669999*************************8754 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.2e-06    0.0077       5      41 ..      44      83 ..      40     133 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 5.2e-06
  Thioredoxin_2  5 gkpvlvvftdpdCpyCkklkkelkel...ddvtvrvllfp 41
                   ++  +++f+++ CpyCk+ k +++e    ++ +  vl+ +
     CCD25761.1 44 KENKVIIFAKSYCPYCKAAKHTIFEEinvPKSKALVLDLD 83
                   56789****************8888744444444434333 PP

>> Ribosomal_L33  Ribosomal protein L33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   1.2   1.5e-05     0.023      31      46 ..      53      70 ..      26      71 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-05
                   EEEETTTT..EEEEEEEE CS
  Ribosomal_L33 31 kKYcprcr..khtlhkEt 46
                   k Ycp+c+  kht+++E+
     CCD25761.1 53 KSYCPYCKaaKHTIFEEI 70
                   67*****888*******7 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.2   1.6e-05     0.025     109     149 ..      24      64 ..      21      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.6e-05
        TraF 109 rkvlndarkeekeaalkklakeygLlfFyrgkcpyceaqap 149
                 ++ +n++ ++++ ++++kl ke   ++F+++ cpyc+a+  
  CCD25761.1  24 KQNTNKMVSQQTVEYVQKLIKENKVIIFAKSYCPYCKAAKH 64 
                 577899999****************************9865 PP

>> DSBA  DSBA-like thioredoxin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   0.00018      0.27       1      20 [.      47      66 ..      47     103 .. 0.86
   2 ?    2.1   0.0     0.095   1.4e+02     168     188 ..     104     123 ..      83     126 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00018
                EEEEEEBTTBHHHHHHHHHH CS
        DSBA  1 tvdeffDvlCPyCylgkerl 20
                +v++f   +CPyC+++k+ +
  CCD25761.1 47 KVIIFAKSYCPYCKAAKHTI 66
                5899*************987 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.095
                 SSEEEETTCEEEESSSSHHHH CS
        DSBA 168 vPtvvvdgkrmvfGadrldtl 188
                 vP v+++g+ ++ G++ ++++
  CCD25761.1 104 VPHVYINGE-FIGGNSEVQKI 123
                 9********.99999998765 PP

>> DUF836  Glutaredoxin-like domain (DUF836)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   3.8e-05     0.057       1      57 [.      47     111 ..      47     134 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.8e-05
                 -EEEEE-TT-HHHHHHHHHHHH.HCCCTTEEEEEEETT...T-CC.....CHCCCCTTTTEEEECT CS
      DUF836   1 kltLyskpgChlCeqakekLke.lkleegleleviDIa...kdee.....leakYgleipvlaleg 57 
                 k++++ k +C+ C+ ak  + e +++ ++ + +v D +   +++e     l    + ++p + ++g
  CCD25761.1  47 KVIIFAKSYCPYCKAAKHTIFEeINVPKS-KALVLDLDlmdNGQEiqqalLAINGQKTVPHVYING 111
                 699*************9988765554443.334444443342222333445557777777777776 PP

>> Thioredoxin_7  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   6.2e-05     0.093      22      79 ..      49     108 ..      38     111 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6.2e-05
                    EEE--TT-HHHHHHHHHHHH-HHHHH.HHHT-EEEEESS.--S-GGG.....-TT---.SSEEE CS
  Thioredoxin_7  22 vffgaswcftCqalerdflsdeevkaalaekfvllrvdv.terdani....leldeqg.vPvva 79 
                    ++f +s+c++C+a + +  ++ +v    ++k  +l +d  ++++ +i    l++ +q  vP+v 
     CCD25761.1  49 IIFAKSYCPYCKAAKHTIFEEINVP---KSKALVLDLDLmDNGQ-EIqqalLAINGQKtVPHVY 108
                    7899************999997774...5999999999854444.4434554444433599986 PP

>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   4.3e-05     0.064       6      67 ..      34      93 ..      27     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.3e-05
                 SHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHH CS
  Thioredoxin  6 tkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakk 67
                 ++ ++ +++ k  ++ ++ F  ++C+ Cka + ++ +  +  k k  ++ +d  +n +  ++
   CCD25761.1 34 QTVEYVQKLIK--ENKVIIFAKSYCPYCKAAKHTIFEEINVPKSKALVLDLDLMDNGQEIQQ 93
                 44556667777..566777***********99988888888888999999998887666554 PP

>> DUF953  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   7.5e-05      0.11      20      53 ..      37      71 ..      20      86 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 7.5e-05
                SEEEEEEB--B-.TTS-BSSHHHHHHHHHHHHHHH CS
      DUF953 20 kivfilFlgekd.teGesWCPdCvkaepvieealk 53
                + v  l   +k     +s+CP+C +a  +i e ++
  CCD25761.1 37 EYVQKLIKENKViIFAKSYCPYCKAAKHTIFEEIN 71
                44555666666667789*************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1170  (0.0652574); expected 358.6 (0.02)
Passed bias filter:                      695  (0.038764); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 963.80
//
Query:       CCD25762.1  [L=92]
Description: hypothetical protein NDAI_0F04440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-27   93.7   2.4    7.4e-27   93.5   2.4    1.0  1  DUF3128   Protein of unknown function (DUF3128)


Domain annotation for each model (and alignments):
>> DUF3128  Protein of unknown function (DUF3128)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   2.4   4.1e-31   7.4e-27       1      79 []       8      85 ..       8      85 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.5 bits;  conditional E-value: 4.1e-31
     DUF3128  1 rlscseafdellsCyslggqfkqyYryGeldnCsekwedfkfClklktkksekiqeilkkrerekkakkkssedvWelR 79
                ++sc+eafd+l+ Cys+ggqf++yYryGe++ C+++ ++fkfCl ++ k++ k+qe++k++ + +++ ++ss+ +W++R
  CCD25762.1  8 TMSCMEAFDQLVACYSVGGQFRSYYRYGEFNPCQKQLSKFKFCLGNS-KNPIKVQEWYKEQAEYNSKFRGSSNAIWNER 85
                69*******************************************99.9****************9999********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 729.47
//
Query:       CCD25763.1  [L=162]
Description: hypothetical protein NDAI_0F04450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      9e-21   74.4   0.2    1.6e-20   73.7   0.2    1.5  1  Complex1_LYR_2  Complex1_LYR-like
    6.4e-12   45.3   0.0    2.7e-11   43.4   0.0    1.9  2  Complex1_LYR    Complex 1 protein (LYR family)
  ------ inclusion threshold ------
      0.016   14.9   0.5      0.064   13.0   0.0    2.1  3  DUF4028         Protein of unknown function (DUF4028)
       0.12   12.9   1.0        1.5    9.3   0.0    2.5  2  YlbE            YlbE-like protein


Domain annotation for each model (and alignments):
>> Complex1_LYR_2  Complex1_LYR-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.2   3.5e-24   1.6e-20       1      82 []      35     116 ..      35     133 .. 0.93

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 3.5e-24
  Complex1_LYR_2   1 vlsLYrrllrelrelppelrslgdayvraefrrhkhlknpeeialflknqreYaellerynpglkmteeekvrktanrvglq 82 
                     +lsLYr +lr++relp  +r++gd+yv++ef+ hk+++np +i++fl++++ Y+ ++ + n + ++    +++k++++++ q
      CCD25763.1  35 PLSLYRKILRQHRELPTLQREMGDQYVKNEFKLHKDIDNPLHIVGFLTSWQDYLTMITHGNWKENALSRSTLEKMSDDQVVQ 116
                     68**********************************************************8887777777788888888765 PP

>> Complex1_LYR  Complex 1 protein (LYR family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0     6e-15   2.7e-11       3      59 .]      35      90 ..      33      90 .. 0.97
   2 ?   -1.0   0.0      0.43   1.9e+03      45      56 ..     116     127 ..     111     133 .. 0.69

  Alignments for each domain:
  == domain 1  score: 43.4 bits;  conditional E-value: 6e-15
  Complex1_LYR  3 vLsLYRalLRearkfpdyntreyfrrriRdeFrknkhvtDpekieellkkgreeLee 59
                   LsLYR++LR+ r +p  + re   +++++eF+ +k++ +p  i  +l++++++L +
    CCD25763.1 35 PLSLYRKILRQHRELPTLQ-REMGDQYVKNEFKLHKDIDNPLHIVGFLTSWQDYLTM 90
                  69****************9.***********************************86 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.43
  Complex1_LYR  45 kieellkkgree 56 
                   ++ el+k+++++
    CCD25763.1 116 QLYELMKEAEKL 127
                   566777777664 PP

>> DUF4028  Protein of unknown function (DUF4028)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.4e-05     0.064      14      35 ..      49      70 ..      40      79 .. 0.86
   2 ?   -1.9   0.1      0.64   2.9e+03      50      55 ..      95     100 ..      92     106 .. 0.79
   3 ?   -2.8   0.0       1.3   5.6e+03      44      54 ..     121     131 ..     112     135 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.4e-05
     DUF4028 14 lctvqnknGdqyvkkwfrkhen 35
                l t+q   Gdqyvk  f+ h++
  CCD25763.1 49 LPTLQREMGDQYVKNEFKLHKD 70
                789***************9976 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.64
     DUF4028  50 dwkenk 55 
                 +wken 
  CCD25763.1  95 NWKENA 100
                 799996 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.3
     DUF4028  44 fkevekdwken 54 
                 +ke ek +k+ 
  CCD25763.1 121 MKEAEKLYKNS 131
                 57777777764 PP

>> YlbE  YlbE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00033       1.5      14      37 ..      39      62 ..      37      81 .. 0.90
   2 ?    1.7   0.2     0.082   3.7e+02      23      41 ..     116     134 ..     105     139 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00033
        YlbE 14 YrkLnRnpeelkelekemkekYkk 37
                Yrk  R+  el +l++em ++Y k
  CCD25763.1 39 YRKILRQHRELPTLQREMGDQYVK 62
                9********************976 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.082
        YlbE  23 elkelekemkekYkktipd 41 
                 +l el ke+ + Yk  + d
  CCD25763.1 116 QLYELMKEAEKLYKNSTDD 134
                 688999*******998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1142  (0.0636957); expected 358.6 (0.02)
Passed bias filter:                      553  (0.0308439); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1292.58
//
Query:       CCD25764.1  [L=501]
Description: hypothetical protein NDAI_0F04460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-75  253.3   0.0    2.7e-75  252.9   0.0    1.2  1  Hexokinase_2  Hexokinase
    1.1e-68  231.1   0.0    1.8e-68  230.4   0.0    1.3  1  Hexokinase_1  Hexokinase


Domain annotation for each model (and alignments):
>> Hexokinase_2  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.9   0.0     3e-79   2.7e-75       2     240 .]     244     497 ..     243     497 .. 0.93

  Alignments for each domain:
  == domain 1  score: 252.9 bits;  conditional E-value: 3e-79
                   EEEEESSSEEEEEEEEGGG-GGGTTTS......-TTSEEEEE--GGGTTTT-SS-..--HHHHHHHHH.SSSTTS-HHHHCCSHHHHHHHHHHHHHH CS
  Hexokinase_2   2 iGlIlGtGtNacyleklsnieklegkk......eksgemviNtEwgafgdegklpllrtkyDkeldee.spnpgeqlfEkmiSGmYLGelvrlvlld 91 
                   iG+I+GtGtN+cy+ek++ni+kl +++      e++++mviNtEwg+f++ +++ l++tkyD+++d++ s+npg++lfEk +SGm+LGe++r+vl+d
    CCD25764.1 244 IGCIFGTGTNGCYMEKIENIKKLPEDTrnkllsEGKTHMVINTEWGSFDN-ECKVLPTTKYDIDIDQKlSSNPGFHLFEKRVSGMFLGEILRNVLVD 339
                   9***********************9999********************97.677788*********9978*************************** PP

                   HHC.TSSS.....C........CCCSTTSS-THHHHHHHC--BTT-HHHHHHHHHCCS---.-HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-. CS
  Hexokinase_2  92 lieekllf.....kgkse....klktpysldteflseieedesedleevrevleellglesvteedleivrevceavsrRaarlvAagiaallkklg 179
                   l++++l++     +   +    +lktp++l+te+ls+ie d+s++l+e++  + + l+l + + ++++ ++++++++srR+a+l+Aa iaa+l k+g
    CCD25764.1 340 LHSRNLILtqyrtH---DqlphRLKTPFQLSTEVLSRIEIDDSSNLRETELSFLQSLRLPT-SLNERKNIQRLVRVISRRSAYLAAAPIAAILIKTG 432
                   **998666566432...13467****************************9999999**88.9********************************88 PP

                   .......SSEEEEEESHHHHHSTTHHHHHHHHHHHH.HT--S.-SEEEEE---TTTHHHHHHHHH CS
  Hexokinase_2 180 k...eekekvtvgvdGslyekypkfrerlqealrel.lgeepekkvklklaedGsgvGAAliaav 240
                       + + +v++g+dG l+e+yp++r++l++al    +g++ e+k +lkl++dGs +GAAl+a+v
    CCD25764.1 433 SlhqRYHGEVEIGADGYLIEYYPGYRSMLRHALALSpIGTDGERKTHLKLSKDGSTTGAALCALV 497
                   87666677899**********************77799*************************86 PP

>> Hexokinase_1  Hexokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.4   0.0     2e-72   1.8e-68       2     199 .]      18     227 ..      17     227 .. 0.95

  Alignments for each domain:
  == domain 1  score: 230.4 bits;  conditional E-value: 2e-72
                   HHHHHHHH---HHHHHHHHHHHHHHHHHHHS.S....ST..S--EE----S---S--EEEEEEEEESSSEEEEEEEEEESSS-EEEEEEEEE--GGG CS
  Hexokinase_1   2 leeilkqfelsdeklkelvdrfleemekgLakek...es..lkmlptyvtrlPtGkekGtylAlDlGgtnlRvllveLlgeskveitqekykipeel 93 
                   +++i+ qfe+  ekl +l+++f+e mekgL+ +    +s  l+m+ptyvt+ P+G e+G  +A DlGg+++Rv++v+L+g+++++i+q k+kipeel
    CCD25764.1  18 VDKIVTQFEIGPEKLDQLTAHFIEAMEKGLNPDLskdNSrgLPMIPTYVTGKPNGLEQGILMAADLGGSHFRVCSVKLNGDHTFTIEQLKSKIPEEL 114
                   89****************************966576622579******************************************************* PP

                   GGS...BHHHHHHHHHHHHHHHHHHH....ST..T-...S-EEEEEEE-SSEE-SBTT--EE-S--TT---TT-TTSBHHHHHHHHHHHTT-S.EEE CS
  Hexokinase_1  94 ktg...taeeLFdfiakciaefleeegeekkeekee...eelplGftFSFPveqtsldegtlirwtKgfaikdvegkdvvqllqealerkglp.vkv 183
                    ++   t+eeLF+f+a++ ++f+++ + e ++++ +   e+l++GftFS+Pv+q+sl++gtlirwtK f+ikd++gkdvv+l+q++l+ +g++ +++
    CCD25764.1 115 LDDdnvTSEELFSFLARRTRAFIKKFHPEVFANAGKpnqESLKMGFTFSYPVDQKSLSHGTLIRWTKVFKIKDTIGKDVVELFQQQLDDHGMDmIRI 211
                   ***9************************99887666889*****************************************************55*** PP

                   EEEE-HHHHHHHHHHH CS
  Hexokinase_1 184 valvNDTvgtllslaY 199
                   val+NDTvgt+l+++Y
    CCD25764.1 212 VALTNDTVGTFLTHCY 227
                   **************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3546.77
//
Query:       CCD25765.1  [L=445]
Description: hypothetical protein NDAI_0F04470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-36  125.0   0.0    4.3e-35  121.0   0.0    2.2  2  GRASP55_65  GRASP55/65 PDZ-like domain


Domain annotation for each model (and alignments):
>> GRASP55_65  GRASP55/65 PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.017   3.1e+02      60      78 ..      71      92 ..      65     124 .. 0.68
   2 !  121.0   0.0   2.4e-39   4.3e-35       1     137 [.     125     282 ..     125     283 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.017
                T--TTTEEEEEEE....SSSSS CS
  GRASP55_65 60 gLvpksDYiiGldk...gllkg 78
                +++ + DYi+G+++    l+++
  CCD25765.1 71 QFQSFFDYIVGINDdplPLMQN 92
                466788******9966633333 PP

  == domain 2  score: 121.0 bits;  conditional E-value: 2.4e-39
                 EEEEETTT--EEEEEE..--..............-SSSSSS............SSSSEEEEEEE-TTTTTS-EEEEEEB.TTSHHHHHT--TTTEEEEE CS
  GRASP55_65   1 levysaksqklrevsl..vp..............skewggq............gllGlslrlaslekaaeevwhvldvl.egsPaakagLvpksDYiiG 70 
                 ++v+sak+ ++r+ ++  +p                                 + lG++++++ l  a++ ++h+l+ + +++Pa+  gL+p +DYiiG
  CCD25765.1 125 FNVWSAKGGTFRDEYVtlLPrdesqlddisltnnG-----SspangnysipafQSLGIKVQWTPLL-ASTFTYHILQLNiPQGPAQVGGLIPDEDYIIG 217
                 58999999999986663256666555555444440.....1555566677777*************.***********98******************* PP

                 EE.SSSS..STSCSHHHHTTTSSS-EEEEEEETTTTEEEEEEE---TTSSSSTTTSEEEE-SGGGS--- CS
  GRASP55_65  71 ldkgllk..geedlselveaheekelkLlvYnsesdevrevtvkpsrewGgegalGcdvgyGlLhriPe 137
                 +++gll+  ge+ l+++v++++++el L+vYn++sd+vr++tv    ++G +g lGc+vgyGlLhriP+
  CCD25765.1 218 CQDGLLAtgGETLLQDIVRSRANQELILYVYNKVSDCVRPITV----SIGANGRLGCNVGYGLLHRIPT 282
                 *****99999*********************************....*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 2968.17
//
Query:       CCD25766.1  [L=618]
Description: hypothetical protein NDAI_0F04480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-34  117.9   0.0    7.8e-19   67.6   0.0    3.7  3  Thioredoxin    Thioredoxin
    1.1e-14   54.8   1.6    1.7e-13   50.9   0.3    3.0  3  Thioredoxin_6  Thioredoxin-like domain
  ------ inclusion threshold ------
      0.037   13.4   0.1       0.22   10.9   0.0    2.2  3  OST3_OST6      OST3 / OST6 family, transporter family


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   2.4e-15   1.4e-11       2     101 ..      39     148 ..      38     150 .. 0.90
   2 ?    1.2   0.0     0.062   3.7e+02      39      76 ..     330     368 ..     326     385 .. 0.80
   3 !   67.6   0.0   1.3e-22   7.8e-19       2     102 ..     432     538 ..     431     539 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.3 bits;  conditional E-value: 2.4e-15
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT......TSEEEEEETTTSHH...HHHHTT-SSSSEEEEEETTE..EEEEE CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd......kvklakvdvdened...lakkyevegiPtlklfkngk..evkky 88 
                  v++l+++nF + +a  ++lvl eFyApw  h k l  e++ +ae l+       ++ + ++++++ ed   l++++ev  +P lk+fk+ +  +   y
   CCD25766.1  39 VIKLSHKNFTAFIAT-HDLVLTEFYAPWDYHSKLLVNEYQGAAEGLQSqgyssdDIAITQLNCNATEDdalLCTQLEVAFYPSLKIFKKHNvlKTPLY 135
                  78899**********.****************************99988999999999999988776644579******************777778* PP

                  ESS-HHHHHHHHH CS
  Thioredoxin  89 egarekeklaafl 101
                  +g r++e+++ ++
   CCD25766.1 136 QGDRTAESIIPYM 148
                  *****99998766 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.062
                  HHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-S.SSSEE CS
  Thioredoxin  39 eleklaeelkdkvklakvdvdenedlakkyeve.giPtl 76 
                  ++++l +++++++ ++ +dv + + +++ ++ + ++P +
   CCD25766.1 330 FFTELGKKYRGEINFVGLDVATFRGHVNMLGLKeQFPLF 368
                  6899****************9988888877764246655 PP

  == domain 3  score: 67.6 bits;  conditional E-value: 1.3e-22
                  EEESSHHHHHHHHTTTSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTT......TSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTE..EEEEEESS CS
  Thioredoxin   2 vlvltkenFeeevakekklvlveFyApwCghCkalaPeleklaeelkd......kvklakvdvdenedlakkyevegiPtlklfkngk..evkkyega 91 
                  v +l+ +++++ v +++k+vlv +yApwC+h k+l+P +e+la+ +        k+ +a+vd+++n+     y veg+Pt++lf++g+  ++  ++g 
   CCD25766.1 432 VYKLVGKTHDKFVFDKSKDVLVRYYAPWCAHSKRLTPIYEELADIYFSdnetwdKLLIAEVDATTNDI--ISYPVEGYPTIVLFPAGEekNPILFKGP 527
                  66788999************************************9876689999***********965..4678*************98788999*** PP

                  -HHHHHHHHHH CS
  Thioredoxin  92 rekeklaaflk 102
                  r+ e+l++f+k
   CCD25766.1 528 RTLEQLMEFVK 538
                  ********997 PP

>> Thioredoxin_6  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.51     3e+03      33      80 ..     109     157 ..     102     173 .. 0.64
   2 !   50.9   0.3   2.8e-17   1.7e-13       9     169 ..     206     382 ..     199     394 .. 0.86
   3 ?    1.2   0.0      0.05     3e+02      39      74 ..     504     540 ..     474     546 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.51
                    HHHHTT--S.SEEEEEETTTTEEEEEETHT--HHHHHHHHHHH---SEE CS
  Thioredoxin_6  33 vadklgvke.pavllfrkfdeekvkydgekitvddlkkfieknslplvr 80 
                    ++++l+v + p++++f+k +  k+ ++  + t++++   +  +s+++v 
     CCD25766.1 109 LCTQLEVAFyPSLKIFKKHNVLKTPLYQGDRTAESIIPYMIAQSVSPVI 157
                    5666777777899999985554444333346666666555555555555 PP

  == domain 2  score: 50.9 bits;  conditional E-value: 2.8e-17
                    HHHHHHHTTT-T.TSEEEEE--HHHHHHTT--SSEEEEEE...........TTTTEEEEEETH...............T--HHHHHHHHHHH---S CS
  Thioredoxin_6   9 seiFekvakelkgdvrfgvtkskevadklgvkepavllfr...........kfdeekvkydge...............kitvddlkkfieknslpl 78 
                     ++F+  a++l++ ++f  + s+  +  + +++p+v +             +       ++++                 + d  +++++   lp+
     CCD25766.1 206 NQTFYNTAAQLSEQYTFISYPSAISSGLVLYPLPEVNVREepnpenenemlH-------IEDKkvrdphifsgdqerlVSERDAFTRWLKVSLLPY 294
                    689*********99*******999999999999***9888777755555540.......5444555555555557899889*************** PP

                    EEE-SHHHHHHHHTSS--EEEEEEE-TTSTTHHHHHHHHHHHHHHTTTT-EEEEEETTGGHHHHHHTT--GGG-SEEEEEESSSS-EEEET CS
  Thioredoxin_6  79 vreltpenaeelfeeglppllllflkkddeeteklkkaiekvakefkdkinfaladaksfkrpleylglsssdlPvivivdsashkykypp 169
                    +  +  + +  ++ ++lp l ++f+  ++ee e++k+ ++++ k+++++inf+ +d+  f   ++ lgl+ ++ P +++ + ++++++++p
     CCD25766.1 295 FADVKAQDFAGYMDTKLP-LGYFFYS-TQEEFEEYKDFFTELGKKYRGEINFVGLDVATFRGHVNMLGLK-EQFPLFAVHNITNNMKYALP 382
                    ****************88.9999995.89*****************************************.***************99877 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.05
                    --S.SEEEEEET.TTTEEEEEETHT--HHHHHHHHHHH CS
  Thioredoxin_6  39 vke.pavllfrk.fdeekvkydgekitvddlkkfiekn 74 
                    v++ p+++lf + ++++++ ++g   t + l++f+++n
     CCD25766.1 504 VEGyPTIVLFPAgEEKNPILFKG-PRTLEQLMEFVKNN 540
                    44559999999834445666666.58999999999988 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.97   5.8e+03       9      26 ..      36      52 ..      32      55 .. 0.77
   2 ?   -1.2   0.1      0.17     1e+03      54     109 ..     322     378 ..     319     436 .. 0.69
   3 ?   10.9   0.0   3.6e-05      0.22      46     136 ..     460     540 ..     450     557 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.97
   OST3_OST6  9 ksngviklndenykellk 26
                + + vikl+ +n++ +++
  CCD25766.1 36 D-SAVIKLSHKNFTAFIA 52
                3.589*******999886 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.17
   OST3_OST6  54 pefelvakswrkdekskskklfFakvdfdegkdvFqklgln.saPhlllfppkkgpk 109
                 +efe   + +++  k+ + ++ F+ +d++  +  +++lgl+ + P + +++ +++ k
  CCD25766.1 322 EEFEEYKDFFTELGKKYRGEINFVGLDVATFRGHVNMLGLKeQFPLFAVHNITNNMK 378
                 66666666666667788999999******9999999999972467777766655444 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 3.6e-05
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfppkkgpkeskkkdtydfsrggfdaealakfiser 136
                 C+  + + p +e +a+ +++d ++  +kl+ a+vd   +  +  ++ ++  P ++lfp+ ++++    +  ++   g  + e+l++f++++
  CCD25766.1 460 CAHSKRLTPIYEELADIYFSD-NETWDKLLIAEVDATTNDII--SYPVEGYPTIVLFPAGEEKN----PILFK---GPRTLEQLMEFVKNN 540
                 999999***************.7999*********9877655..679************55444....33333...345667777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1208  (0.0673769); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 4095.32
//
Query:       CCD25767.1  [L=134]
Description: hypothetical protein NDAI_0F04490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-34  115.9   0.0    9.3e-34  115.6   0.0    1.1  1  FKBP_C    FKBP-type peptidyl-prolyl cis-trans isomerase


Domain annotation for each model (and alignments):
>> FKBP_C  FKBP-type peptidyl-prolyl cis-trans isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.0   5.2e-38   9.3e-34       2      94 .]      39     131 ..      38     131 .. 0.96

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 5.2e-38
                 SCBB-TTCEEEEEEEEEET.TSSEEEEHCCHTSEEEEETTSSSSCHHHHHHHTTSBTT-EEEEEEEGGGTTTTTTBCTTTB.TTSEEEEEEEEE CS
      FKBP_C   2 keeakegdtVtvhykgkle.dgkvfdssrsrakplefkvGsgqvikGfeealegmkvGekrtltippelaYgekglaggvippnatLvFeveLl 94 
                 +++a  gd V vhy+gkl   + +fdss++r++p++fk+Gsgqvi+G++++l+gm+ Gekrt+ ip+++aYg++g  +gvip+na+LvF+v+L+
  CCD25767.1  39 PTKALAGDLVDVHYVGKLRdTEAKFDSSYDRGTPITFKLGSGQVIEGWDKGLVGMCIGEKRTIQIPSSMAYGARGI-PGVIPENADLVFDVQLV 131
                 567899************977*******************************************************.88*************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       196  (0.010932); expected 358.6 (0.02)
Passed bias filter:                      187  (0.01043); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 1085.51
//
Query:       CCD25768.1  [L=809]
Description: hypothetical protein NDAI_0F04500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-05   25.3   6.1    2.3e-05   24.4   6.1    1.4  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain
     0.0067   16.4   0.0          5    7.2   0.0    2.7  2  LOH1CR12  Tumour suppressor protein
  ------ inclusion threshold ------
      0.032   14.4   0.3       0.13   12.5   0.0    2.2  2  ApoA-II   Apolipoprotein A-II (ApoA-II)
      0.038   13.8   0.3       0.12   12.2   0.3    1.8  1  DUF1351   Protein of unknown function (DUF1351)


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   6.1   5.1e-09   2.3e-05       2      34 ..      72     105 ..      71     111 .. 0.91

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 5.1e-09
                 S-HHHHHCT---ST..SSSS-HHHHHCTHHHCCCC CS
     Zn_clus   2 aCdnCrkkKvKCda..kkPaCsnCkklnleCtfys 34 
                 +Cd Crk K++Cd     ++C +Ck l leC+  +
  CCD25768.1  72 SCDVCRKFKTRCDFepSLGKCHRCKVLDLECS-LD 105
                 9*************999999***********9.55 PP

>> LOH1CR12  Tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0011         5      53      93 ..     125     164 ..     108     189 .. 0.80
   2 !    6.2   0.0    0.0022        10      26      61 ..     601     636 ..     595     646 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0011
    LOH1CR12  53 klverikevdakiitllaelrekqkqyasyaealskvnels 93 
                 +l +++k+++aki t+++ l++ ++ y++ a++lsk  + +
  CCD25768.1 125 NLENEVKSLNAKIDTIISLLQDSKNSYEN-ADQLSKASNNE 164
                 57799**********************86.89999876655 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0022
    LOH1CR12  26 srhllrlctRlqeHlavcAkavAadqaklverikev 61 
                  +++l +ctR+  Hl++  ++     +++ + ik++
  CCD25768.1 601 RQQVLSICTRVYWHLNTIGEKLNEATDNVGKIIKSI 636
                 699***************999998888888888876 PP

>> ApoA-II  Apolipoprotein A-II (ApoA-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.8e-05      0.13      42      69 ..     300     327 ..     296     332 .. 0.90
   2 ?   -3.5   0.1       2.7   1.2e+04      55      70 ..     452     467 ..     448     471 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.8e-05
     ApoA-II  42 fektqeqlvPLvkkagtdlvnflsslvd 69 
                 + k qe l PLv++ +t++++++ +l+ 
  CCD25768.1 300 YAKEQETLYPLVERLLTNTLTMFEKLIP 327
                 5799********************9985 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.7
     ApoA-II  55 kagtdlvnflsslvdl 70 
                 +   d  +++ +++d+
  CCD25768.1 452 NIFLDFKSYFTNFMDI 467
                 5555666778888876 PP

>> DUF1351  Protein of unknown function (DUF1351)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   2.6e-05      0.12      73     168 ..     125     230 ..     116     247 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
     DUF1351  73 eFeakikelekkikeaidkideqikefeekekeekkkevkaliselaeeae.......veleei.eiqekwlnktvslkki...eeeieaakaekikkd 160
                 + e+++k+l +ki+ +i  +++  +++e++ +  k ++ +   s+ +  +        ve +e  ++q  +  k  +lk i   +e +   ++   k+d
  CCD25768.1 125 NLENEVKSLNAKIDTIISLLQDSKNSYENADQLSKASNNEGTSSTGTTLLDentelstVESTETiTLQGGYKLKDPPLKLIngiDERL-FPSIATNKQD 222
                 5799*******************************99987655443333322223444443333366666888999988761114555.3344444566 PP

     DUF1351 161 reelekak 168
                 + ++e++ 
  CCD25768.1 223 QIAREQRP 230
                 66666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1275  (0.0711138); expected 358.6 (0.02)
Passed bias filter:                      565  (0.0315132); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.41
# Mc/sec: 5929.69
//
Query:       CCD25769.1  [L=460]
Description: hypothetical protein NDAI_0F04510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-08   32.6  14.8     0.0034   17.5   0.1    4.5  5  Recep_L_domain  Receptor L domain


Domain annotation for each model (and alignments):
>> Recep_L_domain  Receptor L domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.6   2.8e-07     0.005       1      59 [.      80     134 ..      80     166 .. 0.81
   2 !    3.3   2.1    0.0049        88      23      91 ..     186     247 ..     164     257 .. 0.69
   3 !   11.9   0.5   1.1e-05      0.19      47      99 ..     270     318 ..     250     320 .. 0.76
   4 !   17.5   0.1   1.9e-07    0.0034       8      62 ..     286     337 ..     273     342 .. 0.81
   5 !    5.4   0.0     0.001        19      22      63 ..     320     359 ..     318     384 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.8e-07
                     TESEEESBEEEECCHCTSBGGGGGGGGG--EESS-EEEESET-SSEGCGTT--EEESSS CS
  Recep_L_domain   1 nCtvieGnLeitltseneeeellsflsnveeitGyllikntnlkslsflenLrvIrgre 59 
                     nC  ++G++ei ++ +     +   + n++ i+G l+i+n+   ++   ++L+ ++g+ 
      CCD25769.1  80 NCLSVTGSIEILSNYTD----TNVEFGNLKNIEGDLKIANSPYINKIHGNQLQNVHGKF 134
                     8***********99999....67789***************777777777777777654 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.0049
                     GGGGGG--EESS-EEEESET-SSEGCGTT--E..EESSSSBTTTEEEEEES-TT-SBEE-TTTSEESSSEE CS
  Recep_L_domain  23 lsflsnveeitGyllikntnlkslsflenLrv..IrgrelfeskyalaildnknleeLglpslkeitsgsv 91 
                     ls++  + ei++ l+i n   ++ +flen ++  Ir ++       l i+ n +  eL++p+l  +++ +v
      CCD25769.1 186 LSQIGRLGEIKE-LEIFNI--NNNRFLENIEMdlIRVTK------ELTIHANAKELELEMPNLVSVKNLTV 247
                     455555555553.555555..777888886641155444......488999999779****9999988665 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 1.1e-05
                     GCGTT--EEESSSSBTTTEEEEEES-TT-SBEE-TTTSEESSSEEEEESETTS CS
  Recep_L_domain  47 sflenLrvIrgrelfeskyalaildnknleeLglpslkeitsgsvviskNpkL 99 
                     +f+e L++ +  +    + +l i+dn nl+++ l++++++  g++++s+N+kL
      CCD25769.1 270 NFFEELEIPTLLS---IDGTLGIIDNVNLKKIDLKNVTNVD-GGIMVSNNSKL 318
                     4666666655544...35799**************999886.69*******98 PP

  == domain 4  score: 17.5 bits;  conditional E-value: 1.9e-07
                     BEEEECCHCTSBGGGGGGGGG--EESS-EEEESE.T-SSEGCGTT--EEESSSSBT CS
  Recep_L_domain   8 nLeitltseneeeellsflsnveeitGylliknt.nlkslsflenLrvIrgrelfe 62 
                      L i  + +     +   l+nv+ + G ++++n+ +l++++fl++Lr + g  + e
      CCD25769.1 286 TLGIIDNVNL----KKIDLKNVTNVDGGIMVSNNsKLNKIDFLPQLRQVGGAVQLE 337
                     5544444433....56789***************9*************99987666 PP

  == domain 5  score: 5.4 bits;  conditional E-value: 0.001
                     GGGGGGG--EESS-EEEESET-SSEGCGTT--EEESSSSBTT CS
  Recep_L_domain  22 llsflsnveeitGyllikntnlkslsflenLrvIrgrelfes 63 
                     +++fl++++++ G ++++ + + +++ ++ L++++g+  ++s
      CCD25769.1 320 KIDFLPQLRQVGGAVQLEGN-FDDTD-FPELKLVKGSAYIKS 359
                     5789***************9.77776.799999999887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.36
# Mc/sec: 3837.72
//
Query:       CCD25770.1  [L=489]
Description: hypothetical protein NDAI_0F04520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-70  235.6   0.0      1e-69  234.9   0.0    1.3  1  Pkinase         Protein kinase domain
    6.9e-49  166.5   0.0    9.9e-49  165.9   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    1.6e-06   27.6   0.0    0.00046   19.6   0.0    2.2  2  Kinase-like     Kinase-like
      6e-06   25.3   0.3    2.5e-05   23.2   0.0    1.8  2  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.9   0.0   2.2e-73     1e-69       2     264 .]      22     275 ..      21     275 .. 0.92

  Alignments for each domain:
  == domain 1  score: 234.9 bits;  conditional E-value: 2.2e-73
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH..HHSS--HH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle..rkgslsee 98 
                 + +  +G+G+fG Vyka++k tg+ivA+K+++ e+ +++  + +++Ei +l++lk+p+i +++ ++ e+ ++++v+ey+ gg+  dl++   +  l e+
  CCD25770.1  22 SIQDCVGRGNFGDVYKAIDKLTGEIVAIKVVNLESSDEDI-ELIAQEIFFLAELKSPYITNYITTMLEDVSMWIVMEYCGGGSCSDLIRyhYNEGLHED 119
                 567789****************************999977.59**********************************************766677**** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH..TTSCBSHHHHHHHHHHHHHHHHHSS- CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl..keneyskkvDvWslGvilyelltgkp 195
                 ++ +i+k++l+gl+ylH+++ iHrD+K +N+L+ ++g +K++DFG++ +l+s+ k ++fvgt++++APE++  ++++y +k+D+WslG+++yell g+p
  CCD25770.1 120 KVAFITKNVLRGLQYLHEQRKIHRDVKAANVLLTDDGLVKLADFGVSGQLRSTAKRNTFVGTPYWMAPEIIsnSSHGYNEKADIWSLGITVYELLKGCP 218
                 ***********************************************************************8888999********************* PP

                 STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 196 pfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 p+++ +  + v +++           ++k+  +   ++s+ ak +++ +l kdp +R+ta+ellq+p++
  CCD25770.1 219 PYAKYDAGK-VMRNI-----------PKKNLQDCMVSFSDAAKLFISACLIKDPDERPTATELLQQPFV 275
                 ***333322.22222...........234556667789****************************995 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.9   0.0   2.2e-52   9.9e-49       3     257 ..      23     271 ..      21     272 .. 0.95

  Alignments for each domain:
  == domain 1  score: 165.9 bits;  conditional E-value: 2.2e-52
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTS CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekekl 100
                  +++ +G+G+fG+V+++  k     + + Va+K+++ e+++e+ e + +e+ ++ +lk p i +++  ++++ +++iv+ey+ gG+ ++ +r + +e l
   CCD25770.1  23 IQDCVGRGNFGDVYKAIDK----LTGEIVAIKVVNLESSDEDIELIAQEIFFLAELKSPYITNYITTMLEDVSMWIVMEYCGGGSCSDLIRYHYNEGL 116
                  56779***********999....88999*************9***************************************************9**** PP

                  BHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE..EEHHHHHHHHHHHHH CS
  Pkinase_Tyr 101 tlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk..ftsksDvWsfGvllw 196
                  + +++  ++ +v +G++yL++++ +Hrd+ a NvLl+++ +vk++DfG++ ++    ++ k+++      WmapE++++++  +++k+D+Ws G++++
   CCD25770.1 117 HEDKVAFITKNVLRGLQYLHEQRKIHRDVKAANVLLTDDGLVKLADFGVSGQL---RSTAKRNTFVGTPYWMAPEIISNSShgYNEKADIWSLGITVY 211
                  *****************************************************...55556666777788********99989*************** PP

                  HHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 197 EiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  E+++ g  py+++++ +v++++ +++  ++  + +++ + +++ c+ +dp+eRpt +el++
   CCD25770.1 212 ELLK-GCPPYAKYDAGKVMRNIPKKNLQDCMVSFSDAAKLFISACLIKDPDERPTATELLQ 271
                  ***9.9*************************************************999976 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0016       7.4      18      74 ..      25      77 ..      12      92 .. 0.83
   2 !   19.6   0.0     1e-07   0.00046     147     243 ..     122     213 ..     104     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0016
  Kinase-like 18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelairllrgknp 74
                 + +++g+++ v+++ d+ tge +a+kv  l  e s +d+e + ++ + +++l  k+p
   CCD25770.1 25 DCVGRGNFGDVYKAIDKLTGEIVAIKVVNL--ESSDEDIELIAQEIFFLAEL--KSP 77
                 5688999*******************9877..56899999999999999886..455 PP

  == domain 2  score: 19.6 bits;  conditional E-value: 1e-07
  Kinase-like 147 lllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft...aLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviy 241
                  + +T +++r  ++L+++  +h ++++ n+ll  +g ++l +f+   +L+   ++     ++   aP  + +s  gy++        k d W lG+++y
   CCD25770.1 122 AFITKNVLRGLQYLHEQRKIHRDVKAANVLLTDDGLVKLADFGvsgQLRSTAKRNTFVGTPYWMAPEIISNSSHGYNE--------KADIWSLGITVY 211
                  5799999**********************************9633367777777776666776776666666666666........89*********9 PP

  Kinase-like 242 ri 243
                   +
   CCD25770.1 212 EL 213
                  75 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   5.7e-09   2.5e-05     314     394 ..     127     198 ..     121     206 .. 0.87
   2 ?   -0.5   0.2      0.09     4e+02     229     262 ..     331     367 ..     263     441 .. 0.55

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 5.7e-09
  Pkinase_fungal 314 DaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyr 394
                     ++++g++ L+ +++ +HrD+ + N+l+t     ++    L+D+ +  +l    s++++++ +GT+++ma e++++++H y 
      CCD25770.1 127 NVLRGLQYLH-EQRKIHRDVKAANVLLT-----DDGLVKLADFGVSGQLR---STAKRNTFVGTPYWMAPEIISNSSHGYN 198
                     67899*****.88889************.....67888899999999998...4556679**************9999885 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.09
  Pkinase_fungal 229 kaekfrskrkvvsssssqe...lsskaevklkksess 262
                     k +++++++++  s s+ +    +++++ ++ +s+s+
      CCD25770.1 331 KSKNLSKTEESPISASTLQssyCNNNNNNNNSSSNSN 367
                     2222222222222211111222111111111112222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1102  (0.0614647); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.37
# Mc/sec: 3959.33
//
Query:       CCD25771.1  [L=545]
Description: hypothetical protein NDAI_0F04530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-28   98.8   7.0    2.1e-28   98.8   7.0    2.8  2  ArfGap    Putative GTPase activating protein for Arf
  ------ inclusion threshold ------
      0.012   15.9   1.0      0.012   15.9   1.0    4.2  4  DUF3446   Early growth response N-terminal domain
      0.027   14.3   3.5      0.053   13.4   2.7    2.0  2  TMV_coat  Virus coat protein (TMV like)


Domain annotation for each model (and alignments):
>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.7      0.31   1.9e+03      43      91 ..     163     207 ..     148     222 .. 0.68
   2 !   98.8   7.0   3.4e-32   2.1e-28       7     116 ..     223     336 ..     217     337 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.31
                 HCCS.TTT--EEETTTS---HHHHHHHHHTCHHHHHHHHTTTC-TTTSG CS
      ArfGap  43 HrslgvhiskvrsltldkwedeelellkalgNkkaneileaklpkeekr 91 
                 H sl   i+   s++ d+ +++ ++  +++ N+++n+ l++++++ +  
  CCD25771.1 163 HDSL---INDSNSISHDNTSNNIIS-KNTINNDNNNKDLNNNKSTTTTT 207
                 4444...777778888886655554.46777888888777777555544 PP

  == domain 2  score: 98.8 bits;  conditional E-value: 3.4e-32
                 HCC.SCCCCB-TTT-SBS-.-EEETTTTEEE-HHHHHHHCCS.TTT--EEETTTS---H.HHHHHHH.HTCHHHHHHHHTTTC-TTTSG-TTCGHHHHH CS
      ArfGap   7 llk.epenkvCaDCgakep.tWaslnlgvflCieCsgvHrslgvhiskvrsltldkwed.eelellk.algNkkaneileaklpkeekrskssskekre 101
                 + + +++n +C+DC+++++ +W+sln+ ++lCi+Csg+Hrs+g+hisk+rsltld++++ e l l+k ++ N+++nei+e++lp + k s++ +++ r+
  CCD25771.1 223 VKHlHQSNLKCCDCNSTDSvEWISLNILCLLCIKCSGIHRSMGSHISKIRSLTLDNFHSiETLYLIKnNCLNSNVNEIYEHNLPINLKISSNCNDQMRS 321
                 444456899*****665544************************************998466777777889**************************** PP

                 HHHHHHHTCHTTCCG CS
      ArfGap 102 efirakYeekkfaek 116
                  fi++kY  kk++ek
  CCD25771.1 322 LFIKDKYITKKYIEK 336
                 ***********9986 PP

>> DUF3446  Early growth response N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   8.4       2.3   1.4e+04      44      56 ..      18      30 ..      13      92 .. 0.71
   2 ?   -1.1   0.6       0.4   2.4e+03      33      45 ..     200     212 ..     163     241 .. 0.57
   3 ?   15.9   1.0   1.9e-06     0.012       9      65 ..     422     484 ..     418     496 .. 0.68
   4 ?   -0.0   0.3      0.19   1.1e+03      41      56 ..     508     523 ..     498     538 .. 0.60

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 2.3
     DUF3446 44 sssssssssspsl 56
                s+ssssss+sps+
  CCD25771.1 18 STSSSSSSKSPSI 30
                3444455555554 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.4
     DUF3446  33 ppsspssssssss 45 
                 + s+++++++++s
  CCD25771.1 200 NKSTTTTTTTTTS 212
                 2222222222222 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 1.9e-06
     DUF3446   9 tsgsnslwaeellslvsglvgvanppsspss.sssssssssssss........spslscsvaaqqs 65 
                  +++ ++w +e++     ++++ +p   +s+ +ss ssss+ssss        sp +  s+   q+
  CCD25771.1 422 LPTNMTQWGPEVIKYWKAMLKIYEPYKESSPlPSSFSSSSPSSSSfskgniykSPLAQKSL---QH 484
                 566679****************999888888777777777777763333333333333343...44 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.19
     DUF3446  41 ssssssssssssspsl 56 
                 +s +ss+ ss+ sp +
  CCD25771.1 508 TSIPSSTLSSPFSPAT 523
                 4555555555555543 PP

>> TMV_coat  Virus coat protein (TMV like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   2.7   8.9e-06     0.053      42     128 ..     121     210 ..     100     233 .. 0.70
   2 ?   -3.4   0.0       1.3   7.7e+03      16      44 ..     244     272 ..     235     274 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.9e-06
                 HHHHHCCCT-B--S.BTTC-SS...S.TTSSSEEEE.HHHHHHHHHHHCHHHS......S-SCCCCCCCCS...........SST-SSTTT.H CS
    TMV_coat  42 vvaealaalgrdlpvsvterFpgartslGdkeflll.ldkrvtaalsrladaad.....deknrvvelnkaeaegkttrttenqaatataelt 128
                 ++ + +++l++d   + ++ F     +  ++ ++    dk +++   +l++ ++     ++ n++++ n+++ + +++  ++n+++t+t  +t
  CCD25771.1 121 KIRNGINGLKKDNRKNNDRLFK---FKFENETVMNHwFDKIMKSMHDSLINDSNsishdNTSNNIISKNTINNDNNNKDLNNNKSTTTTTTTT 210
                 5666666666555544444442...22333333333477788887777777776677889****************************99953 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.3
                 EEECCCHHHHHHHCTTS-TTSCCCCHHHH CS
    TMV_coat  16 Wirvselksllknlraikfsvassrsvva 44 
                 Wi+++ l  l+ +  +i+ s+ s+ s++ 
  CCD25771.1 244 WISLNILCLLCIKCSGIHRSMGSHISKIR 272
                 99999999999999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1411  (0.0786993); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.22s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4007.59
//
Query:       CCD25772.1  [L=381]
Description: hypothetical protein NDAI_0F04540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-12   46.0   4.9    3.4e-12   46.0   4.9    2.8  3  RSF       Respiratory growth transcriptional regulator


Domain annotation for each model (and alignments):
>> RSF  Respiratory growth transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.4   5.8         1   1.8e+04     114     121 ..      18      25 ..       9      38 .. 0.55
   2 !   46.0   4.9   1.9e-16   3.4e-12     160     243 ..     102     185 ..      85     196 .. 0.91
   3 ?   -4.1   3.5      0.31   5.6e+03     277     297 ..     292     312 ..     261     339 .. 0.61

  Alignments for each domain:
  == domain 1  score: -6.4 bits;  conditional E-value: 1
         RSF 114 kwqqrqqq 121
                 + qq+qqq
  CCD25772.1  18 QQQQQQQQ 25 
                 22333333 PP

  == domain 2  score: 46.0 bits;  conditional E-value: 1.9e-16
         RSF 160 gnhlskllfakspltintycqfydrrtkricnqemiwkdknsrekhgsrkyqrhlskvhdvqltpqnfteffdhnsplfqecyd 243
                  + lsk+++a    + n ycqfyd++ ++ cnq + ++ k+sr  h + k  rhl   h+    p  +   +dh s +fq+ y 
  CCD25772.1 102 LKSLSKFVMAERNDSFNYYCQFYDAKKQQTCNQVLEFQTKQSRTSHQADKCTRHLLEEHNYIPDPMTILYQMDHSSTVFQNAYP 185
                 5679********************************************************99999999999**********995 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 0.31
         RSF 277 etgsslinrqvqqqnvlelqs 297
                 e+ +sl n+ +++q    lqs
  CCD25772.1 292 ESTNSLKNKSKRKQRKPPLQS 312
                 445556666555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3683  (0.205421); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.45
# Mc/sec: 2543.27
//
Query:       CCD25773.1  [L=264]
Description: hypothetical protein NDAI_0F04550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-21   76.1   6.9      7e-21   74.3   6.9    1.9  1  DUP       DUP family


Domain annotation for each model (and alignments):
>> DUP  DUP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   6.9   3.9e-25     7e-21       8     100 ..      97     190 ..      69     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 74.3 bits;  conditional E-value: 3.9e-25
         DUP   8 llvlvllilllva...lvlqnlrafsksvsdekfkikllseiikekpavdakeWdtIaknmNqYLfenklwktpyfFydgedCeefFrklilepls 100
                 +l +++++++  +   +v+ +   +  +  +++ +ikll ++i+ kp+   ++Wd+Ia +mN+YL+++++ +tpyfFydg+++++ Frk++ epl 
  CCD25773.1  97 CLSIFIILFV--SlflFVFNSELNMKIEKLNSHNQIKLLLDVIECKPNGSSSSWDIIACHMNEYLYSEGAHNTPYFFYDGSETYWWFRKYVFEPLD 190
                 3333333333..2334444444444555556677*********************************************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1269  (0.0707792); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1871.79
//
Query:       CCD25774.1  [L=76]
Description: hypothetical protein NDAI_0F04560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.38   10.8   6.8       0.42   10.7   6.8    1.0  1  Herpes_capsid  Gammaherpesvirus capsid protein


Domain annotation for each model (and alignments):
>> Herpes_capsid  Gammaherpesvirus capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.8   2.3e-05      0.42      90     134 ..      14      61 ..       4      73 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 2.3e-05
  Herpes_capsid  90 aglsafealsltvP...PetaegttgGgsdssasGasGgsastlsSgp 134
                    a ++a +a+  tvP    +++   t G++  ++sG s g+a+t s g 
     CCD25774.1  14 AVVQAQNATNGTVPtvpVQNGTNGTNGSNATTSSGISTGAAATNSLGA 61 
                    556677777777775525677777777777789999999998877554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       759  (0.0423336); expected 358.6 (0.02)
Passed bias filter:                      315  (0.0175693); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 597.53
//
Query:       CCD25775.1  [L=85]
Description: hypothetical protein NDAI_0F04570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-20   73.3   8.0    1.6e-20   73.0   8.0    1.1  1  Pmp3      Proteolipid membrane potential modulator


Domain annotation for each model (and alignments):
>> Pmp3  Proteolipid membrane potential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   8.0   9.1e-25   1.6e-20       1      48 [.       5      53 ..       5      54 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.0 bits;  conditional E-value: 9.1e-25
        Pmp3  1 dillillaiilPPlaValksG.csadllinilLtllgylPgviHAfyii 48
                d++l+++ai++PPlaV++k+G cs+d+lin++L+llg++Pg+iHA+y+i
  CCD25775.1  5 DWFLVFIAIFVPPLAVWVKRGiCSKDFLINLILFLLGFFPGLIHALYVI 53
                789*********************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       411  (0.0229238); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 680.48
//
Query:       CCD25776.1  [L=513]
Description: hypothetical protein NDAI_0F04580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-27   94.1   0.0      1e-26   92.8   0.0    1.7  1  RPAP1_C   RPAP1-like, C-terminal
    6.3e-14   51.5   7.5    6.3e-14   51.5   7.5    2.2  2  RPAP1_N   RPAP1-like, N-terminal


Domain annotation for each model (and alignments):
>> RPAP1_C  RPAP1-like, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   1.1e-30     1e-26       1      66 [.     354     421 ..     354     422 .. 0.97

  Alignments for each domain:
  == domain 1  score: 92.8 bits;  conditional E-value: 1.1e-30
     RPAP1_C   1 slRFdfdGdlvpl..adelethrgLhhHgdepalaGYTlkElfqLarSavpsQralalqtLgrilekl 66 
                 ++RFdf+G+l+p+  +++ +th++LhhH+ +p+laGYT++El +L+ S++psQr++++q+Lgril+kl
  CCD25776.1 354 QCRFDFNGNLIPPtrKIDNTTHSALHHHATDPQLAGYTIPELQHLSISNFPSQRCISIQILGRILYKL 421
                 58***********989999***********************************************98 PP

>> RPAP1_N  RPAP1-like, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   7.5   7.1e-18   6.3e-14       1      45 [.     108     152 ..     108     153 .. 0.98
   2 ?   -1.2   0.1       0.2   1.8e+03       9      20 ..     263     274 ..     262     276 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 7.1e-18
     RPAP1_N   1 qrIdeENrarLasMspeEIeeereeLlesLdPkllefLlkRankk 45 
                 q+I+ EN++r+++M++e+ ++e++eLlesL+Pkl++ Ll++ nk+
  CCD25776.1 108 QSIHMENLNRIKDMTDEQFLNEKRELLESLNPKLIKNLLSKINKR 152
                 79*****************************************98 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.2
     RPAP1_N   9 arLasMspeEIe 20 
                 + ++ Ms eE +
  CCD25776.1 263 QTIDHMSNEELM 274
                 67889****976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1454  (0.0810977); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.23s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3835.99
//
Query:       CCD25777.1  [L=409]
Description: hypothetical protein NDAI_0F04590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-67  226.2  34.1    7.2e-67  225.9  34.1    1.0  1  Kre28            Spindle pole body component
  ------ inclusion threshold ------
       0.73    9.8   4.1        1.3    9.0   0.5    2.5  2  FAS_N            N-terminal domain in fatty acid synthase sub


Domain annotation for each model (and alignments):
>> Kre28  Spindle pole body component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.9  34.1   8.1e-71   7.2e-67       6     367 ..      14     407 ..      10     408 .. 0.87

  Alignments for each domain:
  == domain 1  score: 225.9 bits;  conditional E-value: 8.1e-71
       Kre28   6 sikgyeaqlreleeeiaasseevLseQdkrlkealreltqsvialaeen.slvkpvkndl......aevlidpkllsekikelnkLvelLklthleqEt 97 
                 +  +ye ql +l  ei+++se+ L+eQ++++ ++l+e+tqsv+ ++++n  l+++ +  +      a ++id+k +   i+++nkL elLk++hl+q++
  CCD25777.1  14 TSTKYEGQLDDLLMEITQMSEQFLHEQERKVDSTLNEITQSVETMKQDNnTLIETQSSGAgtgtdtAMMMIDIKDFPSNIEKFNKLLELLKMVHLDQDS 112
                 5678*******************************************996788866555589999899******************************* PP

       Kre28  98 LDnFlrYTi.....sstdllqleSesDpkyvsleeeVseLedetltekeseieqikgeIkekgkelaekqdqinelyLettneideCwelLnEleelrd 191
                 LD+FlrYT+     s +++l l+S  Dp++vsle+eV +L+++++ ++ +ei+ +k +I +   ++ + ++++nel L+ +neideCw+lLnE+++l+d
  CCD25777.1 113 LDYFLRYTVlsndgSKNKPLSLKSIDDPQFVSLEREVDNLQNNEIAQQLNEINGTKLKIFKINDTIFQSNNELNELSLNLGNEIDECWDLLNEFNDLKD 211
                 ********94433333459*******************************************************************************5 PP

       Kre28 192 rrnkvekqtseekdt..eddlveetYeeWkslqkslqekeelkeeldrLkke....kkeleevkkksknkeek..deevlenvkslnlLiklWkkkfik 282
                   +k + +t + ++t  e+d+v++tY+e k+l+++  ++ +l++e++  +k+    k++ +++++k k  + +    ++ + ++ ln Likl ++ f+ 
  CCD25777.1 212 --KKLNSTTKNGVKTsrENDPVNDTYNEFKKLNDQNVKLTKLNDEMNLVQKSvarfKNKTHKYDDKDKDTNGNdeIDKEKQTLEVLNGLIKLFENTFM- 307
                 ..444444444444445**************************999988886222256677777777766666334567788899*************. PP

       Kre28 283 gskekisnlelypqsrKlQfevadtqyviiisLdd..kkstikdielfekdak....sivedkelrkkvnnky...........lgkseifqvlndIie 364
                  + ++++nl++ p  r + fe+++ +y ii+ L++  + + ++di++ + d++    ++   k l+k++n k+           ++k+ if+ ++ Iie
  CCD25777.1 308 KISSNLNNLKISPGKRQIEFEINN-KYKIILILSQygNDERLSDIKITRIDDSndddDLNC-KRLEKDFNLKFhldgsgdygnrKKKYSIFEIMESIIE 404
                 7899********************.**********99999*******98777655535554.78999999999999999999988999*********** PP

       Kre28 365 elk 367
                 +++
  CCD25777.1 405 RIE 407
                 985 PP

>> FAS_N  N-terminal domain in fatty acid synthase subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.039   3.5e+02      61     114 ..      10      60 ..       8      69 .. 0.58
   2 ?    9.0   0.5   0.00014       1.3      31     107 ..     236     317 ..     230     334 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.039
       FAS_N  61 LgyvaksiestesstsqfedvlklvleefessyLkkn..dihalvsnLpse.ttlla 114
                 + y+++    t + ++q+ d+l  +  ++ +++L+++   + ++   + ++  t+++
  CCD25777.1  10 MDYITS----T-KYEGQLDDLLMEI-TQMSEQFLHEQerKVDSTLNEITQSvETMKQ 60 
                 555555....2.3456777777655.4678888855544677777776655444444 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00014
       FAS_N  31 deFtatlvapseeleqeeeplseieLlakFLgyvaksieste........sstsqfedvlklvleefessyLkkndihalvsnLp 107
                 +eF++   ++ + ++ ++e   ++  +a+F   + k+ ++++        ++++q+ +vl+ +++ fe++++    i +   nL+
  CCD25777.1 236 NEFKKLNDQNVKLTKLNDEMNLVQKSVARFKNKTHKYDDKDKdtngndeiDKEKQTLEVLNGLIKLFENTFM---KISSNLNNLK 317
                 67887777777788889999999999999999998888865568999999999*******************...5666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2200  (0.122706); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 2911.43
//
Query:       CCD25778.1  [L=399]
Description: hypothetical protein NDAI_0F04600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.9e-122  408.0  15.8   4.1e-121  404.2  15.8    2.0  1  Fumble    Fumble
  ------ inclusion threshold ------
       0.16   11.8   0.3          2    8.3   0.1    2.5  3  DUF3636   Protein of unknown function (DUF3636)


Domain annotation for each model (and alignments):
>> Fumble  Fumble
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.2  15.8  4.6e-125  4.1e-121       2     329 ..      21     394 ..      20     395 .. 0.95

  Alignments for each domain:
  == domain 1  score: 404.2 bits;  conditional E-value: 4.6e-125
      Fumble   2 iavDiGgsLaKlvYfsrkkkksaaekekeeeveeeeeseelggrLhfikfetekieevleflkelllkskekekkkktikaTGGGaykyaelikeelg. 99 
                 ia+DiGg+LaK+++                          ++ +L f ++ete ie+++++l++++++ ++++ +++ i aTGGGa+k+++l++ e++ 
  CCD25778.1  21 IAIDIGGTLAKVIFSPI-----------------------QSYKLYFNTVETELIEKFIKLLHSIIESYNNNNYSTTRIIATGGGAFKFYDLLNWEFKk 96 
                 89***********9888.......................3468****************************99999********************76 PP

      Fumble 100 .vevekedemeclikGlkfllteipkevftys..................ee.kpkkavekkeseeiyPylLvniGSGvsilkvegeekfervgGtslg 178
                   +++++dem+cli+Gl+f+++e+p+evfty+                  ++ ++ ++++++++e+iyPylLvniGSGvsilkv +++ fervgG+slg
  CCD25778.1  97 iHSIKQKDEMKCLINGLDFFIHEVPNEVFTYNtqdgiqliksksrsstssQSsSSLNSSSNTNNEQIYPYLLVNIGSGVSILKVIQPSVFERVGGSSLG 195
                 689*****************************************9998753235566667778999********************************* PP

      Fumble 179 GgtfwGLlslLtgaksfdellelaekGdnskvDmlvgDiyGedyekiglksdliassfgkvfkkkkkkeeeek.......................... 251
                 Ggt+wGLlsl+tgaks+de+l+la++Gdn++vDmlvgDiyG+dy+kiglks+ iassfgkvf++++ ++++++                          
  CCD25778.1 196 GGTLWGLLSLITGAKSYDEMLKLAQDGDNTNVDMLVGDIYGTDYNKIGLKSSNIASSFGKVFQDRSISSNNSStkkvsqqiidhnndaliennnsnngk 294
                 ***************************************************************9977776666899*********************** PP

      Fumble 252 ......................eDiarslLyaisnnigqiaylqaklhnlkriyFgGsfirgheqtmktlsyaikfwskgelkalFlrHegylGavGaf 328
                                       +Di++slLyaisnnigqiaylqak+hn+++iyFgGs+irgh +tm+tlsyai+fws+ +++a+Fl+HegylGa+Gaf
  CCD25778.1 295 stslttnttdiikrnlnksfqnSDICKSLLYAISNNIGQIAYLQAKIHNVQNIYFGGSYIRGHLTTMNTLSYAINFWSQSSKQAFFLKHEGYLGAMGAF 393
                 *************************************************************************************************** PP

      Fumble 329 l 329
                 l
  CCD25778.1 394 L 394
                 8 PP

>> DUF3636  Protein of unknown function (DUF3636)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.076   6.8e+02      64     107 ..      34      76 ..      28      90 .. 0.81
   2 ?   -1.7   0.0      0.27   2.4e+03      73      95 ..     101     123 ..      95     151 .. 0.77
   3 ?    8.3   0.1   0.00022         2      55     108 ..     244     303 ..     243     337 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.076
                 SS----HHHHHHHHHHHHHHHHHHHHHS--T....TS-TTSHHH CS
     DUF3636  64 fGpisseeedqkavekaiidrvsnlLteepradegeakvteaei 107
                 f pi+s +   ++ve  +i++   lL+  ++ + +++++++++i
  CCD25778.1  34 FSPIQSYKLYFNTVETELIEKFIKLLHSIIE-SYNNNNYSTTRI 76 
                 789999999999***********99999998.555566666555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.27
                 HHHHHHHHHHHHHHHHHHS--T. CS
     DUF3636  73 dqkavekaiidrvsnlLteepra 95 
                 +qk+  k +i+ + ++++e p++
  CCD25778.1 101 KQKDEMKCLINGLDFFIHEVPNE 123
                 68889999999999999999982 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00022
                 GGGG--SS-SS......----HHHHHHHHHHHHHHHHHHHHHS--T....TS-TTSHHHH CS
     DUF3636  55 LstSvlpdsfG......pisseeedqkavekaiidrvsnlLteepradegeakvteaeil 108
                 L+ S ++ sfG      +iss+++++k+v++ iid+    L+e+ ++++g+++  +++++
  CCD25778.1 244 LKSSNIASSFGkvfqdrSISSNNSSTKKVSQQIIDHNNDALIENNNSNNGKSTSLTTNTT 303
                 67899999***66666666669**********************9988877766555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1435  (0.0800379); expected 358.6 (0.02)
Passed bias filter:                      536  (0.0298957); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.45
# Mc/sec: 2693.29
//
Query:       CCD25779.1  [L=336]
Description: hypothetical protein NDAI_0F04610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-19   68.3   0.0    7.5e-19   67.6   0.0    1.3  1  ATP_transf  ATP adenylyltransferase
    5.3e-06   25.9   0.1    1.5e-05   24.5   0.0    1.7  2  DUF4931     Domain of unknown function (DUF4931)
     0.0049   16.7   0.0      0.012   15.4   0.0    1.6  1  DUF4922     Domain of unknown function (DUF4922)


Domain annotation for each model (and alignments):
>> ATP_transf  ATP adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   1.3e-22   7.5e-19       1      66 []     249     323 ..     249     323 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.6 bits;  conditional E-value: 1.3e-22
  ATP_transf   1 sYNllmtkewmvviPRsaegaele........evgglslNslglaGtllvkseeeldalkeepgpl.evLaevGv 66 
                 sYN+l+tk+w+++iPRs+++ae++           +ls+Nslg++G++l+k+e+e++++ ++p+++ e+L ++G+
  CCD25779.1 249 SYNVLLTKNWICLIPRSNATAEIKqtpedseeIDLKLSINSLGYVGMILTKDEKEFNQIVSNPQIVdELLLSCGF 323
                 8*****************************99999***************************************7 PP

>> DUF4931  Domain of unknown function (DUF4931)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   2.4e-09   1.5e-05      13     121 ..      59     168 ..      47     181 .. 0.81
   2 ?   -1.9   0.0      0.28   1.7e+03     122     155 ..     279     312 ..     238     314 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.4e-09
     DUF4931  13 irnketacPfcdre...kltdildeegslillknkfpvledtlqtvlietdeceedistyseehlrellrfgvkhwlelekseeyksv.llfknhGPls 107
                  ++ ++  Pf + +    ++d l+++g+  ll nkfp++ +     ++ t+e +++ s  +   l +  ++  k   + e++ee++s  l f n G +s
  CCD25779.1  59 TEKDDSIDPFINPNpdvVISDDLNNDGDYQLLLNKFPIIPEH---SILTTKEFQSQTSALTPKDLLTTYQLLCKLDADDEDEEEFTSRhLAFYNSGAHS 154
                 34444556887766322478999****************875...4788999*******99999988888888989999999***995378******** PP

     DUF4931 108 GGsikhahmqivGl 121
                 G s  h h+qiv l
  CCD25779.1 155 GSSQDHKHLQIVEL 168
                 ************87 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.28
     DUF4931 122 keldyeenvkeeefeGltiskkeevelnlstkPk 155
                 +e+d +  ++   + G++++k+e+    + ++P+
  CCD25779.1 279 EEIDLKLSINSLGYVGMILTKDEKEFNQIVSNPQ 312
                 4677788888888888888887776666777776 PP

>> DUF4922  Domain of unknown function (DUF4922)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.9e-06     0.012      19     175 ..     143     309 ..     137     325 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.9e-06
     DUF4922  19 dltvfYN.GpkcGASAPDHlHfQagk..kgllplekdvkrlereleellvsk..eeeelsllkeylrpvlv.ieskekeeaaelf.eklyealpveege 110
                 + + fYN G+++G S  DH H+Q ++  ++l+p+++++ + +++   ++ s+  +++++s  + ++ p+    e  +++  a ++ + l ++l+  ++ 
  CCD25779.1 143 RHLAFYNsGAHSGSS-QDHKHLQIVElpSKLIPFQQSLCNGKEHFLPTFNSEplQDDKISFAH-FVLPLPEsSEDVNEDLLAMCYiSLLQRTLTFFQDW 239
                 4678**978888866.7******98533789****9998877755444333311222233322.22222220222222222222213344566667777 PP

     DUF4922 111 eEpmlNilawyee..gelvvvvfpRkkhRpecY...yaegekklliSPgavdmaGliitpreeDfeklta 175
                 +    N+   y+   ++  ++++pR++   e       ++e  l +S  ++   G+i t  e++f+++ +
  CCD25779.1 240 TNERPNLSKSYNVllTKNWICLIPRSNATAEIKqtpEDSEEIDLKLSINSLGYVGMILTKDEKEFNQIVS 309
                 7778888888885444444567789888877662222233334678888999999999999999998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      591  (0.0329634); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.28s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2432.24
//
Query:       CCD25780.1  [L=131]
Description: hypothetical protein NDAI_0F04620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-38  128.4   0.1    9.7e-38  128.2   0.1    1.1  1  UCR_14kD  Ubiquinol-cytochrome C reductase complex 14kD subun


Domain annotation for each model (and alignments):
>> UCR_14kD  Ubiquinol-cytochrome C reductase complex 14kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.2   0.1   5.4e-42   9.7e-38       2      99 ..      20     117 ..      19     118 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.2 bits;  conditional E-value: 5.4e-42
    UCR_14kD   2 llskllkplakwyanaagyrklGLrydDllseenedvqeALrrLpeeeaydRvfRlkrAlqlslkhklLPkeewtkpeedvrYlkpyieevekeaaer 99 
                 +l+k++ p+a+ +++++gyr+lGLry+Dl++ee+++vq+A+rrLp +e+y+R++R++rA+q++l+h+lLP++ew+k+++dv+Yl pyi e+e ea+e+
  CCD25780.1  20 ILNKFCVPVANKFIKYSGYRQLGLRYNDLFAEESPVVQTAIRRLPADESYARNYRIIRAHQTELTHHLLPRNEWIKAQDDVPYLLPYILEAELEANEK 117
                 789*********************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       355  (0.0198003); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 1049.57
//
Query:       CCD25781.1  [L=495]
Description: hypothetical protein NDAI_0F04630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1160  (0.0646996); expected 358.6 (0.02)
Passed bias filter:                      286  (0.0159518); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3626.49
//
Query:       CCD25782.1  [L=672]
Description: hypothetical protein NDAI_0F04640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.3   11.8   3.0          1   10.0   0.4    2.8  2  DnaI_N    Primosomal protein DnaI N-terminus


Domain annotation for each model (and alignments):
>> DnaI_N  Primosomal protein DnaI N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.052   9.3e+02      35      68 ..      72     105 ..      38     113 .. 0.76
   2 ?   10.0   0.4   5.8e-05         1      14      41 ..     425     452 ..     413     458 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.052
                 HHHHHHSTTTC-HHHHHHTHHHHHHHHHS-SS-T CS
      DnaI_N  35 qaFlqehqeelteeaierslskLyeyveekkkce 68 
                 q+F ++++++ +    + +++++ ++++++k ++
  CCD25782.1  72 QQFSKQNNHDNETILNQIDMTTFMNFINKSKGIS 105
                 7888888874444444567889999999888776 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 5.8e-05
                 XXHHHHHHHHHHHHHTTXHHHHHHHHHS CS
      DnaI_N  14 krkfekryeklkeevlsdpeVqaFlqeh 41 
                  ++ +++y++++ ++l+++++q+F ++ 
  CCD25782.1 425 GKHSQENYQAIISHLLQSQDIQNFAKAM 452
                 45889*******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1118  (0.0623571); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4672.90
//
Query:       CCD25783.1  [L=328]
Description: hypothetical protein NDAI_0F04650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-64  217.0   0.0    3.5e-64  216.7   0.0    1.1  1  Endonuclease_NS  DNA/RNA non-specific endonuclease


Domain annotation for each model (and alignments):
>> Endonuclease_NS  DNA/RNA non-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.7   0.0     2e-68   3.5e-64       2     225 ..      55     288 ..      54     289 .. 0.97

  Alignments for each domain:
  == domain 1  score: 216.7 bits;  conditional E-value: 2e-68
                      HHCCTTCS-TTSTTSEEEE-SSEEEEEETTTTEEEEEEEEESCGGGSS-TT--GG---B--TTS-CCSG---HHHCTTS.SSEEEESS-GGG-- CS
  Endonuclease_NS   2 sseltskgfptsgddkvlfykgfsvsynkerriplwvaenldgasvnasaaerrgpsfkadpripqlsfrtqysdyagskgldRGHLaaaadfk 95 
                      +++++++gfp++ +d ++ + +f ++yn+++r+p+wv e+++++s+++++++r+++ fk+d++ip+l fr+q +dy +s g+dRGH+a+aad k
       CCD25783.1  55 PKDFFAYGFPGPIHD-LHDRGEFISCYNRQTRNPYWVLEHITPESLDMRNGDRKNSFFKEDESIPEL-FRAQLKDYFRS-GFDRGHQAPAADAK 145
                      7899**********9.***********************************99**************.***********.9************* PP

                      SSHHHHHHTTBGGGEEEE-HH.HHCTHHHHHHHHHHHHHCTTS.EEEEEEEEES-ECC-.........EEEETT.TTEE--SEEEEEEEEECCT CS
  Endonuclease_NS  96 fsteanaatfnytNivPQvag.fNqgnWlrlEnlvrklvrkydrklyvvtGpvfvprll.........yeligk.nkvavPthfwkvilsedad 178
                      +s+ea++ tf++tN++PQv + fN+ +W ++E ++r l+++y+ +++++tGp++ p+++         ye+ig+  ++avPthf+k i+ e+  
       CCD25783.1 146 YSQEAMDGTFYLTNMSPQVGEgFNRDYWSHFEYFCRGLTKRYG-SVRIMTGPLYLPKKDpidgkfkvtYEMIGNpPNIAVPTHFFKLIIAEKPL 238
                      *******************************************.************************************************95 PP

                      TT...CEECCEEEEEESSSS-TTS-GGGGB--HHHHHHHHT--TTTTS-H CS
  Endonuclease_NS 179 dk...gtlnaaafllpnepiaderpltayqvpvdeleeltGldffcnvaa 225
                      ++   ++++ aaf++pne+i++e++l ++ +pv++le+ tGl+  +n ++
       CCD25783.1 239 SDpkmDGISVAAFVMPNEKISNETKLLDFHIPVNALERSTGLELLRNYPE 288
                      4468***************************************9999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2545.90
//
Query:       CCD25784.1  [L=1982]
Description: hypothetical protein NDAI_0F04660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.036   14.3   1.1         43    4.3   0.0    4.8  3  RTP1_C1   Required for nuclear transport of RNA pol II C-term
       0.04   13.9   3.6      0.058   13.4   0.1    2.9  3  DUF1676   Protein of unknown function (DUF1676)


Domain annotation for each model (and alignments):
>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.14   1.2e+03      13      58 ..     877     924 ..     865     943 .. 0.76
   2 ?    4.3   0.0    0.0048        43       3      52 ..     998    1047 ..     996    1052 .. 0.86
   3 ?    3.7   0.1    0.0075        67      44      77 ..    1558    1593 ..    1549    1612 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.14
     RTP1_C1  13 lpvrahglvlLrkliekkskeavldiekilkllleaLkdedsY..vYL 58 
                 +++ a+  v +++ ++  +k+++   +++ +llle+Lk+ + Y   YL
  CCD25784.1 877 VAIAANVCVAIHNALKVMQKNDLDLEQSVGNLLLESLKKLEFYndTYL 924
                 56667777888899999999999999***********98777744455 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0048
     RTP1_C1    3 ealkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkde 52  
                  + ++ ++dp + v ++ l  ++ lie+    ++++++k+l +l + L+d+
  CCD25784.1  998 TLFSLINDPHPVVHSWSLKAMQALIEEYLVIEISTLSKLLMTLEKLLSDP 1047
                  67789***********************9778888888888888888775 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.0075
     RTP1_C1   44 llleaLkde..dsYvYLnaikgLvaLadvfpeevlk 77  
                  +ll++L+++  + ++++  +++L+a+++ f+++ lk
  CCD25784.1 1558 ILLNSLEQDeiEGFIFILFVQCLEAIMKNFDSHSLK 1593
                  7888998662368***************99988775 PP

>> DUF1676  Protein of unknown function (DUF1676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2      0.47   4.2e+03      30      87 ..     104     159 ..      91     175 .. 0.56
   2 ?   13.4   0.1   6.5e-06     0.058      56     160 ..    1242    1368 ..    1226    1371 .. 0.79
   3 ?   -1.0   0.0      0.17   1.5e+03      71      92 ..    1580    1601 ..    1574    1608 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.47
     DUF1676  30 lvdgvslvrneeaasasskeeeeelsreeeeare..eelekllleklerflkshslevkl 87 
                 l ++vsl ++e ++++++  + ++++ +++++++  +++++ l+e + + l+s +l+  l
  CCD25784.1 104 LEEDVSLPSKEAEKNRKK--SPPKKNYKYSASKDlaSTITTQLFETFGKQLTSLKLN--L 159
                 456666666655544432..2222222233333355777777777777777765554..3 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 6.5e-06
     DUF1676   56 reeeeareeelekllleklerflkshslevklpeeldaegaeesisrsleedne...........egR...............kkk.kkkkklkkml 125 
                  r + + ++e+l+++ ++ ++++l+sh l++   ee++  ++eesi+r+ e +ne             R                k+ +     +   
  CCD25784.1 1242 R-FFNISREALSQIYYNDIDNLLNSHGLKLLHTEEIK-GEEEESIARNDEIVNEvtgiadtinwkAKRsivklviclcdesmdNKQiF---NILATK 1333
                  4.34444579*************************99.55888899999888889999999999844466666666666555533323...347788 PP

     DUF1676  126 lplllalklklklLlplalgllallagKALllgkl 160 
                  +p l+ + +k++++ ++ +++l+l     Ll+++ 
  CCD25784.1 1334 IPELIKISFKASTMRVVSMKILGLTLLNTLLVSFS 1368
                  999**9*************************9985 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.17
     DUF1676   71 leklerflkshslevklpeeld 92  
                  le++ + ++shsl+v+l +++ 
  CCD25784.1 1580 LEAIMKNFDSHSLKVQLLSAMH 1601
                  78899999*********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1982 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       980  (0.05466); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.01u 0.27s 00:00:01.28 Elapsed: 00:00:00.43
# Mc/sec: 13755.57
//
Query:       CCD25785.1  [L=799]
Description: hypothetical protein NDAI_0F04670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-53  181.9  22.3    2.8e-53  181.5  22.3    1.1  1  Sec10     Exocyst complex component Sec10


Domain annotation for each model (and alignments):
>> Sec10  Exocyst complex component Sec10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.5  22.3   1.5e-57   2.8e-53      53     710 ..      92     785 ..      73     786 .. 0.78

  Alignments for each domain:
  == domain 1  score: 181.5 bits;  conditional E-value: 1.5e-57
       Sec10  53 lssge...................tsklellfkkskdpekklkaAqiarkLlaiskeld..elekaentrekiekyaerlEkelLkeFdkayrkedfer 130
                 ++s +                    ++ +++   ++ ++++l++A+i++  +   k+ +  e+ k+++++++++   e + + +L e + +y +e+fe+
  CCD25785.1  92 NESNAkeiysiyyrtfnplvtkllNNNYSHF-FPQQYEDDPLNQAKILKYIRIYNKSCSvcESSKFRKVETNLNILKEIFINSILHEMEINYTTENFEK 189
                 5554455555555555555544423333444.555666799*********99999999999************************************** PP

       Sec10 131 mkeiAkvLqefnggasvvqlfvnqhdffidkdkldeangiesseiweklad...pdeapskvees.lqa.lfseiretvkeeaeiikrVFpnpekVmqt 224
                    + ++L    +++++v+ f  + +f  d       n+i    + e l++    d+ ++ ++ s l++ +f   r+  + ++ +i+  F++   V+  
  CCD25785.1 190 AGYFMEILLLCHEETNAVEFFNSKVEF-PDI------NKIPFPSMSELLKEnegTDSYKPELDWSiLDSlIFIPYRDFLNDKVILIDTLFKDHYPVVLQ 281
                 *******************99666655.434......444444444455553333333333333313331467779999******************** PP

       Sec10 225 FlqrvfaqviqqrlealLdkassisqlayLraLhsl.ysstlkLvkdLkey.lsteeidgssalsalLdqsveelFvpyleg..dsYlerEkksLeely 319
                 F+++  +q + +++++l+ +    ++  +L  + ++ ++ ++ L+++L +  +              ++  v+++F  yle    +Yl+   ++  e +
  CCD25785.1 282 FIENFIQQTLLRTIDQLFTEID-EDNYLFLNFFPQIyFKVINRLCDELNDSmNG----------GPKFHIAVKKFFDVYLEPqiLNYLTLFPNYYSEFL 369
                 *******************998.688999999966516889*********9333..........44455555555555554433455555555555555 PP

       Sec10 320 aellskFt.tlheqsa.sakslknkvkkklatsfkasls..asklaassktkqinraasstlskskkraelketaatsakaaknedeleeedsllslev 414
                 +++ +k++ +++++++ ++k+ +n  + + +   +++ s  +++++    t+ ++ ++ s +s+ +++ +++e+ + + + +   ++l+++++l+sl +
  CCD25785.1 370 NKEFKKYQqEIESNEVeQNKEILNSIRIQNEDLLQNEDSdnTNTNKIDFLTSFTKIFKLSNNSRIHQQ-NTQEQLNLAYNLNLISKNLQNIKDLISLPL 467
                 55555544111111110122222222222222222221111222222222333334444444444444.7788888888889999************** PP

       Sec10 415 aesllkwaaeslgRaveLss....psevpkaveallelLlsalgkeYvetaLd.aal.........aaltaqeiaektevpdls.flevvrsvdliisl 498
                   ++   ++e ++   +++      ++++ ++ ++++ Ll++l  +++++a++ a+           +  +++ +  ++v++l+ f e+++++d i+++
  CCD25785.1 468 CYKIFEFTREKIEDIYRFMVietlVKTINLKCQEIFKHLLNQLSINHIKPAFEkAISllseynpndLKSIEINVKISSKVQPLVqFTELINIGDIILQM 566
                 ****99999999988888887778889999***********************8888****999665555555566789999999************** PP

       Sec10 499 lqvyiktill..pllsdspdirremvkeknsflsrlEekvnaglqktidvvvgeveylls.kqkknDFrpknddlamerqpTeaCkeivefLssvhsal 594
                 ++ ++k++ll  ++l +++d+++++++ k+sf+  +++ v+ gl+ +i+ +++e+  l+   q + DF+p  ++ +m+++pT+ ++++ve+L+++   l
  CCD25785.1 567 ISIFYKNELLakKILDKNKDFLNDVIQCKKSFENIVDDYVADGLNIGINKLMDEIVFLFQtVQLADDFNP--VTPVMDIKPTKCAIQVVELLNNHSFLL 663
                 *********9978889999***************************************************..9999*********************** PP

       Sec10 595 keslsgsnlesflteiGlrlhklLleHlkkftvsseGGlmltkDlneYqdavk.sfkipelsekFelLrelgnlfiVqpevlkslvregal.....akl 687
                 ++++++ + ++ ++eiG r+++ +++ +k+  +s+ G+   ++Dln Y++++  ++k++++   F +L+ +g+l+++  ++ k+l r + +     +++
  CCD25785.1 664 NGATDKGTIDVYQQEIGERFFNEVVKNIKRNMISTDGAATMICDLNYYYKFMAyKLKQKNIVPLFVALKNIGQLYLISGKDSKELGRMICDvgkfnGIF 762
                 **************************************************997589**********************9999999999999999***** PP

       Sec10 688 drelireyiqrReDykkekldne 710
                 ++e+++e++qrR+D+  +k+d+e
  CCD25785.1 763 SQEEVYEFVQRRSDWLRVKRDVE 785
                 *******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1354  (0.0755201); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 5588.67
//
Query:       CCD25786.2  [L=307]
Description: hypothetical protein NDAI_0G00100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 2602.44
//
Query:       CCD25787.2  [L=321]
Description: hypothetical protein NDAI_0G00110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2695.63
//
Query:       CCD25788.2  [L=300]
Description: hypothetical protein NDAI_0G00120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.048   13.9   0.3       0.11   12.8   0.0    1.7  2  MMtag     Multiple myeloma tumor-associated
       0.11   13.1   0.0       0.33   11.6   0.0    1.9  1  ARID      ARID/BRIGHT DNA binding domain


Domain annotation for each model (and alignments):
>> MMtag  Multiple myeloma tumor-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.2e-05      0.11      18      67 ..     151     199 ..     143     204 .. 0.90
   2 ?   -3.6   0.1       1.6   1.4e+04       7      21 ..     222     236 ..     219     239 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.2e-05
       MMtag  18 khrenYLGhSlkapvGrwqkgkDldwyakekkkeeeeeeerkeelkkike 67 
                  + e YL +S+++ +G ++k   ldw  + + +++++++e++ee++++ e
  CCD25788.2 151 ADTEWYLNQSVRILTGFFEKV-ILDWKDQYRPDNRKTDQEIREEINRLNE 199
                 46699***************9.9****999999999999******99876 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.6
       MMtag   7 dqfkwedvksskhre 21 
                 +q +++++k++ ++e
  CCD25788.2 222 QQQDFDEMKKDVNKE 236
                 455666777666665 PP

>> ARID  ARID/BRIGHT DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.7e-05      0.33      17      88 ..      28      94 ..      13      96 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.7e-05
                TSS..SS----SSSS-STTHHHHHHTTT.SSHHHHTT.CHHHHHHHHHTS-..-.......HHHHHHHHHHHHHH CS
        ARID 17 gtl..kkiPviggkevdlykLyraVikr.GGfrkvtqknkWeevaqklglpredpeasesvaqalksiYeryLlp 88
                 ++  +++P   +ke+d++ +yr+++++ G ++k++     +e+++ l  ++ + +    v +   siY++yL p
  CCD25788.2 28 VSYrkNELP---SKEIDMLFMYRIIQSEgGNIKKING----KEFFETLRTSHPR-TRIFLVPSYYHSIYKEYLSP 94
                333334455...8**************9555666643....4777777544222.12224556777778887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       939  (0.0523733); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2270.86
//
Query:       CCD25789.2  [L=217]
Description: hypothetical protein NDAI_0G00130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      254  (0.014167); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1560.63
//
Query:       CCD25790.2  [L=187]
Description: hypothetical protein NDAI_0G00140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-07   31.4   0.1    1.9e-07   30.8   0.1    1.3  1  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
    7.1e-07   29.7   3.4    1.2e-06   28.9   3.4    1.4  1  FoP_duplication  C-terminal duplication domain of Friend of P
  ------ inclusion threshold ------
      0.019   14.8   0.0      0.029   14.2   0.0    1.2  1  RRM_occluded     Occluded RNA-recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.1   3.2e-11   1.9e-07       6      69 ..      55     115 ..      52     116 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 3.2e-11
                 ETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   6 LppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +p dv++ ++++++++fG  + ik +     k  + ++VeFe+ + +ek+++++ngk l+g++l
  CCD25790.2  55 IPLDVSDFTIEDMLKEFGTPVYIKFYEM---KDARSCIVEFEDLSIMEKIIKNFNGKDLNGTKL 115
                 78999999******************97...99****************************998 PP

>> FoP_duplication  C-terminal duplication domain of Friend of PRMT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   3.4     2e-10   1.2e-06      11      60 ..     136     185 ..     125     187 .] 0.60

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 2e-10
  FoP_duplication  11 gggrggrrgrgrggrggrggrgrgrggrggrkkkkpltkeeLDaeLDaYm 60 
                       ++   ++ r++++rg rg++    +++ +  +++++t+e+LDaeLDaYm
       CCD25790.2 136 DSRDDYSQYRRNNSRGSRGSHYSLESKSSRPASSQKKTAEDLDAELDAYM 185
                      333333444444444444444444444444678***************** PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   4.9e-06     0.029      10      70 ..      56     117 ..      52     122 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 4.9e-06
  RRM_occluded  10 sDtvnkariralveek.egeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklrc 70 
                   +  v++  i+++++e  +    k + + d +++ivef+d +i  k++   +g++++g kl++
    CCD25790.2  56 PLDVSDFTIEDMLKEFgTPVYIKFYEMKDARSCIVEFEDLSIMEKIIKNFNGKDLNGTKLEV 117
                   55799999*******955666799999********************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       629  (0.0350828); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1338.51
//
Query:       CCD25791.2  [L=722]
Description: hypothetical protein NDAI_0G00150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-42  145.3   0.3    2.8e-42  144.9   0.3    1.2  1  PUL       PUL domain
    3.6e-39  133.5   0.0      9e-39  132.2   0.0    1.7  1  PFU       PFU (PLAA family ubiquitin binding)
    1.2e-22   79.7  14.5    0.00059   20.6   0.0    7.0  7  WD40      WD domain, G-beta repeat
    0.00051   20.1   0.1        1.3    9.1   0.0    4.1  3  BBS2_Mid  Ciliary BBSome complex subunit 2, middle region


Domain annotation for each model (and alignments):
>> PUL  PUL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.3   6.3e-46   2.8e-42       1     276 [.     473     719 ..     473     720 .. 0.91

  Alignments for each domain:
  == domain 1  score: 144.9 bits;  conditional E-value: 6.3e-46
         PUL   1 lPqktyllfkkanldkllkKlkelNakllsagqkdlalsdeelatLeallaalessseat..qlelllklltsWppedrfPalDLlRlllldprvsayf 97 
                 lP+ktyl++ ++n d +++++ ++N+k       +++++de++at+ a l++    +e++   +++++ + ++W  e++ Pa+D+lRl++ + +++ ++
  CCD25791.2 473 LPIKTYLSLRNYNADSIFNGIVKFNSK-------EKTFDDEQIATIGADLQDA---DENWeaLYSYAVIIRSKW--ENKTPAYDILRLIVQKLPAAVNL 559
                 8***********************866.......578**************99...999999************..****************9999999 PP

         PUL  98 aeeeggktissllslllssalsssapkalennrmlalRllaNlFssplgrellls...kaeslletleslltssllssnknlrialatlllNlavllhk 193
                 a     +++ + l     ++       +    +ml++R+laN+F+++ +  +l+s    +es++et+   ++++++++ +nl +a++tl+lN++v +  
  CCD25791.2 560 A-----EFVEEGLGN---KSI------SI---VMLTVRMLANCFENQIWGLELMSsnkVYESIFETIDVNFENATKKQAQNLALAVSTLILNYSVRVV- 640
                 9.....455555554...222......23...***********************9**99*************************************7. PP

         PUL 194 skdelseedqvellaallealee.....e..eedsEalyRlLvAlGtlvyaapegealadlarvldakeivkkakkkafekeprvkevak 276
                     +s ++++++  +++ea+++     e  +e++Ea+yRl+vA+G++++       +++l+ +++  +++ ++kk  ++  pr+k++++
  CCD25791.2 641 ----QSGTEKLDIGPVVIEAMNTkyaplEeyQENEEAAYRLVVAYGNFATV------EPTLRHFAKSISWLLNVKK-MYGIIPRFKDIFD 719
                 ....788999***********9966666268******************88......799****************.5678899999987 PP

>> PFU  PFU (PLAA family ubiquitin binding)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.2   0.0     2e-42     9e-39       2     112 ..     341     451 ..     340     452 .. 0.95

  Alignments for each domain:
  == domain 1  score: 132.2 bits;  conditional E-value: 2e-42
         PFU   2 pGkkeGqvklvkeeegkveayqwsaaeekWekiGevvgsee..ssskkkeyeGkeYDyvfdvdiedgkpplkLpynksdnpyeaAekFleknelsqsyl 98 
                 pGkkeGqv +v+  +g +ea+ +  ++++W+k+G+vvgs +   +++k+eyeGk YDyvfdvdi++g pplkLp+n+sdnpy++A++F++k els sy+
  CCD25791.2 341 PGKKEGQVVVVRAPTGALEAHLY--SSNHWSKVGDVVGSGGatGNDQKTEYEGKLYDYVFDVDIQEGVPPLKLPINVSDNPYTVADHFIAKYELSPSYK 437
                 8**********************..67**********874455899***************************************************** PP

         PFU  99 eqivnFiikntkga 112
                 ++ivnFi knt+g+
  CCD25791.2 438 NDIVNFILKNTNGM 451
                 ***********975 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   9.3e-07    0.0042       3      37 ..       6      40 ..       4      41 .. 0.77
   2 ?   -2.5   0.0       2.6   1.2e+04       7      27 ..      76      89 ..      72      91 .. 0.69
   3 !   20.6   0.0   1.3e-07   0.00059       2      37 ..      95     129 ..      94     130 .. 0.87
   4 !   14.6   0.0     1e-05     0.046       4      37 ..     135     170 ..     132     171 .. 0.79
   5 ?    3.9   0.0     0.026   1.1e+02      10      36 ..     183     211 ..     175     211 .. 0.78
   6 !   19.6   0.3   2.6e-07    0.0012       2      38 .]     218     255 ..     217     255 .. 0.86
   7 !    7.7   0.1    0.0016       7.2      12      37 ..     271     295 ..     262     296 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 9.3e-07
                EEEEEESS.SS...EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  3 clrtltGH.ss...vtslafspdgawlasGsdDgtvriW 37
                +  tl+GH ++   v ++    d + +as s+Dgtvr+W
  CCD25791.2  6 LRATLRGHrQDvkdVVAI----DDTKIASVSRDGTVRLW 40
                5679****9883334555....77778989********* PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.6
                EESSSS.EEEEEEETTSSEEEE CS
        WD40  7 ltGHss.vtslafspdgawlas 27
                ++G++s v+++        l+s
  CCD25791.2 76 YSGQDSiVNGV--------LLS 89
                78994547999........665 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 1.3e-07
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +++ tl GH s+v+sl    ++  l+sGs+D+t ++W
  CCD25791.2  95 DPIFTLVGHeSNVCSL--EMSNETLVSGSWDKTAKVW 129
                 68899****988****..66666699*********** PP

  == domain 4  score: 14.6 bits;  conditional E-value: 1e-05
                 EEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtltGH.ssvtsla..fspdgawlasGsdDgtvriW 37 
                  + l+GH  sv++ +     ++++++  s D+t++iW
  CCD25791.2 135 KYDLKGHeASVWCAKsfPGVENKYVSV-SADQTIKIW 170
                 56799**999****9877777777755.55******* PP

  == domain 5  score: 3.9 bits;  conditional E-value: 0.026
                 SSS.EEEEEEETTSSE.EEEEETTSEEEE CS
        WD40  10 Hss.vtslafspdgaw.lasGsdDgtvri 36 
                 H++ ++ +  s++++  ++++s D t+++
  CCD25791.2 183 HTDvIRRVEISKSNPNeIITCSNDSTIKL 211
                 66645888888888888889*******97 PP

  == domain 6  score: 19.6 bits;  conditional E-value: 2.6e-07
                 EEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 
                 + +r + GH s+v+s++ f+ +++++ s+++D++v iWd
  CCD25791.2 218 EIIRNWCGHeSFVYSVKqFNLSNDLV-SCGEDRSVIIWD 255
                 5677888**999****9999999997.6888*******9 PP

  == domain 7  score: 7.7 bits;  conditional E-value: 0.0016
                 SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriW 37 
                 s++s++  p+ + ++ Gs D+ +ri+
  CCD25791.2 271 SIWSIDILPNDDIII-GSSDQLIRIF 295
                 599**********98.877*****96 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.058   2.6e+02      12      43 ..     114     145 ..     106     176 .. 0.78
   2 ?    3.9   0.0     0.012        54       6      28 ..     191     213 ..     187     247 .. 0.83
   3 !    9.1   0.0   0.00029       1.3       9      35 ..     277     303 ..     269     328 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.058
    BBS2_Mid  12 eneLvvgsddfeirvfkeeelvaeitetekvv 43 
                 ++ Lv gs d + +v+++++l+ +++ +e+ v
  CCD25791.2 114 NETLVSGSWDKTAKVWQNGSLKYDLKGHEASV 145
                 45899999999999999999999888877655 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.012
    BBS2_Mid   6 dvdgdgeneLvvgsddfeirvfk 28 
                 ++ + + ne++ +s+d +i++ +
  CCD25791.2 191 EISKSNPNEIITCSNDSTIKLSN 213
                 7889999************9865 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00029
    BBS2_Mid   9 gdgeneLvvgsddfeirvfkeeelvae 35 
                    ++++++gs d+ ir+f ++e  + 
  CCD25791.2 277 ILPNDDIIIGSSDQLIRIFTKNETRMA 303
                 445689*************99987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4881.88
//
Query:       CCD25792.2  [L=291]
Description: hypothetical protein NDAI_0G00160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-49  164.0   2.5    7.8e-19   67.4   0.0    4.1  3  Mito_carr  Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.035   14.0   0.0    1.5  2  DUF829     Eukaryotic protein of unknown function (DUF829)
       0.18   11.8   0.0       0.34   10.9   0.0    1.4  1  ProSAAS    ProSAAS precursor


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.6   2.8e-14   1.6e-10       4      90 ..       5      75 ..       3      78 .. 0.94
   2 !   46.2   0.0   5.5e-16   3.3e-12       6      94 ..     103     188 ..      99     191 .. 0.86
   3 !   67.4   0.0   1.3e-22   7.8e-19       3      93 ..     197     281 ..     195     285 .. 0.93

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 2.8e-14
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90
                s+l +ll+G++ag+ + lv +P+d++Ktrlq++++                   + G +g yrGl+ +++ +ap+++l f +y+t+k
  CCD25792.2  5 SFLTSLLSGAAAGTSTDLVFFPIDTLKTRLQAKGGFF----------------ANGGYHGIYRGLGSAIVASAPSASLFFISYDTMK 75
                6899***************************988774................579*****************************98 PP

  == domain 2  score: 46.2 bits;  conditional E-value: 5.5e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHH.HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGl.rglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 l ++++++++ ++a lv  P +v+K r q++k++s+ +    +l+++ +    +G+ + lyrG++ +++r +p + ++f lye+lk+  +
  CCD25792.2 103 LTHMFSSSVGEVAACLVRVPAEVIKQRTQVHKTNSSLQ----TLKIILRNENGDGIrKNLYRGWSTTIMREIPFTCIQFPLYEFLKKKWK 188
                 67999*****************************8753....56666666667799556***************************9765 PP

  == domain 3  score: 67.4 bits;  conditional E-value: 1.3e-22
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 l+++k  ++G++ag va+  ttPld++Ktrl+++k+s        +++ +++iy++eG++ +++G++p+ ++++   a+ +++ye+++ ++
  CCD25792.2 197 LNPVKGAISGSIAGGVAAATTTPLDFLKTRLMLNKTSIP------VRHLVQNIYRDEGFKIFFSGIIPRTMWISAGGAIFLGVYEMTHYVI 281
                 6789999*****************************976......89**************************************998665 PP

>> DUF829  Eukaryotic protein of unknown function (DUF829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.8e-06     0.035      19     102 ..      46     142 ..      45     187 .. 0.74
   2 ?   -2.4   0.0      0.59   3.5e+03      14      33 ..     237     254 ..     236     273 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.8e-06
      DUF829  19 YsdlYrkpgativvitspsrdllwrt....krlasaldellellsesqrsey..wpilfhvfsngGpllylall.......aalqkaesfkkllpel 102
                 Y  +Yr  g  iv   ++++ ++++      + ++++++l ++  +++  +    ++l h+fs   + ++++l+       ++ +++++ ++ l+ l
  CCD25792.2  46 YHGIYRGLGSAIVASAPSASLFFISYdtmkVEARPYIEKLIQNTTKNDAPSTqlADTLTHMFSSSVGEVAACLVrvpaeviKQRTQVHKTNSSLQTL 142
                 7789999**9999999999999999966665666666666666666555554999*******************98887776666666666666633 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.59
      DUF829  14 khlaKYsdlYrkpgativvi 33 
                 +hl    ++Yr++g++i+  
  CCD25792.2 237 RHL--VQNIYRDEGFKIFFS 254
                 677..8899*****999865 PP

>> ProSAAS  ProSAAS precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   5.6e-05      0.34     125     170 ..      88     134 ..      77     142 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.6e-05
     ProSAAS 125 pdddpdapaaklarallrar.ldpaalaaqlvpapaaalrprppvyd 170
                 + ++ dap+++la +l +        +aa lv +pa + + r  v+ 
  CCD25792.2  88 NTTKNDAPSTQLADTLTHMFsSSVGEVAACLVRVPAEVIKQRTQVHK 134
                 46889**********9988745667899**************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2192.20
//
Query:       CCD25793.2  [L=99]
Description: hypothetical protein NDAI_0G00170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.7e-32  109.9   1.1    6.3e-32  109.8   1.1    1.0  1  DUF2015   Fungal protein of unknown function (DUF2015)
  ------ inclusion threshold ------
      0.083   12.7   0.6        0.1   12.4   0.6    1.1  1  DUF1837   Domain of unknown function (DUF1837)


Domain annotation for each model (and alignments):
>> DUF2015  Fungal protein of unknown function (DUF2015)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   1.1     7e-36   6.3e-32      32     112 .]      13      92 ..       2      92 .. 0.93

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 7e-36
     DUF2015  32 srlpssFeedieaGlsssnFdlseNiesgdsRaGLdeaakeeikkimkkrrvkFdeARliyteerlkkngigpdGrPlDpk 112
                  +l++sF +d+e+G++s++Fd+ +N + +d+R+GLd+a+keei++im+ ++++Fd+ARl+yte+++++ngi++dG+PlDpk
  CCD25793.2  13 IELNDSFVDDLEQGFNSRHFDIISN-NVDDERSGLDDATKEEIRRIMQAQNISFDKARLLYTERQFNENGIASDGMPLDPK 92 
                 5789******************666.4689**************************************************9 PP

>> DUF1837  Domain of unknown function (DUF1837)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.6   1.1e-05       0.1     123     164 ..      18      64 ..      14      73 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.1e-05
     DUF1837 123 slkkflnedslnkelnlisnrldde....deelreaikklld.psts 164
                 s  ++l++ +  + +++isn++dde    d++ +e+i+++++ ++ s
  CCD25793.2  18 SFVDDLEQGFNSRHFDIISNNVDDErsglDDATKEEIRRIMQaQNIS 64 
                 4455568899999****************************944433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 777.90
//
Query:       CCD25794.2  [L=464]
Description: hypothetical protein NDAI_0G00180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-58  194.2   0.0    3.4e-20   71.6   0.0    3.2  3  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    0.00077   19.1   0.0        1.1    8.8   0.0    3.1  3  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
     0.0014   18.7   0.0       0.23   11.6   0.0    2.5  2  RRM_7         RNA recognition motif
  ------ inclusion threshold ------
       0.01   15.6   0.0        1.4    8.7   0.0    2.9  3  RRM_Rrp7      Rrp7 RRM-like N-terminal domain
      0.034   14.1   0.0        8.7    6.4   0.0    2.6  2  Nup35_RRM_2   Nup53/35/40-type RNA recognition motif
       0.16   11.8   0.0         16    5.5   0.0    2.7  3  RRM_occluded  Occluded RNA-recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0   1.1e-23   3.4e-20       1      69 [.     112     179 ..     112     179 .. 0.98
   2 !   64.9   0.0   1.5e-21   4.4e-18       1      69 [.     231     299 ..     231     300 .. 0.99
   3 !   54.2   0.0   3.1e-18   9.2e-15       1      69 [.     388     456 ..     388     457 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.6 bits;  conditional E-value: 1.1e-23
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fVgnL++d+t e+L+e+Fs++G+++++++++ ++g ++g++ VeF+++ d e+A+++++g  + +r++
  CCD25794.2 112 IFVGNLTYDCTPEDLREYFSGIGEVVRADIIT-SKGHHRGMGTVEFTNSKDVEDAIRQYDGSYFLDRQI 179
                 8*******************************.7*****************************999986 PP

  == domain 2  score: 64.9 bits;  conditional E-value: 1.5e-21
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +f+ nLp++++++ Lk++F++fG++ ++++  d++g+s+gf+ V    k+++ekA+++lng++++gr++
  CCD25794.2 231 VFIANLPFSINWQALKDMFKEFGDVLRADIELDSRGRSRGFGTVILREKSAMEKAIATLNGTEMEGRRI 299
                 8******************************************************************98 PP

  == domain 3  score: 54.2 bits;  conditional E-value: 3.1e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++++nLp ++ +++L++lF+ +G+i++++l ++ +g ++  a Ve+ + edA+ ++e+lng+++gg+el
  CCD25794.2 388 IYCNNLPASTARSDLYDLFESIGRISNAELKYNDKGEPTSEAVVEYINLEDADVCIERLNGYNYGGCEL 456
                 89****************************************************************998 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.074   2.2e+02      29      92 ..     112     177 ..      90     183 .. 0.77
   2 !    8.8   0.0   0.00038       1.1      15      97 ..     217     302 ..     203     318 .. 0.79
   3 !    4.9   0.0    0.0061        18      41     101 ..     399     463 ..     360     464 .] 0.70

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.074
       RRM_5  29 llVyglepdkvnldklFnlfclYgnvervkflktk...ketalvqmgdasaveravqHLnnaklfgk 92 
                 ++V +l  d ++++ l   f+  g+v r  ++ +k   ++   v+  ++++ve a+    +    ++
  CCD25794.2 112 IFVGNLTYD-CTPEDLREYFSGIGEVVRADIITSKghhRGMGTVEFTNSKDVEDAIRQYDGSYFLDR 177
                 456677554.6788899999999*********99844457788**********99988777766555 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00038
       RRM_5  15 tgspgaagvaegsVllVyglepdkvnldklFnlfclYgnvervkflktk....ketalvqmgdasaveravqHLnnaklfgkrleva 97 
                  + ++ +++ +g  +++ +l p  +n + l  +f  +g+v r  +        ++   v + + sa e+a+  Ln++++ g+r++v+
  CCD25794.2 217 RAPSTRQPNRQGYKVFIANL-PFSINWQALKDMFKEFGDVLRADIELDSrgrsRGFGTVILREKSAMEKAIATLNGTEMEGRRIDVK 302
                 44466778888888888898.4579999************99999544402225667999************************996 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.0061
       RRM_5  41 ldklFnlfclYgnvervkflktkke....talvqmgdasaveravqHLnnaklfgkrlevalSKq 101
                  + l+ lf   g ++   +  + k+     a+v+  +  +++ +++ Ln+ +  g +l++   K+
  CCD25794.2 399 RSDLYDLFESIGRISNAELKYNDKGeptsEAVVEYINLEDADVCIERLNGYNYGGCELQISYGKR 463
                 4557777777777777666666655233369*********************9999**9998885 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.012        36       1      28 [.     109     136 ..     109     152 .. 0.91
   2 !   11.6   0.0   7.8e-05      0.23       3      29 ..     230     256 ..     228     274 .. 0.91

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.012
       RRM_7   1 srkvFvGGlPiDiteeelkatfkefgkv 28 
                 s  +FvG l  D t e+l + f+  g+v
  CCD25794.2 109 SNSIFVGNLTYDCTPEDLREYFSGIGEV 136
                 6789******************999987 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.8e-05
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvl 29 
                 kvF+  lP  i+ ++lk+ fkefg+vl
  CCD25794.2 230 KVFIANLPFSINWQALKDMFKEFGDVL 256
                 9***********************985 PP

>> RRM_Rrp7  Rrp7 RRM-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.026        78      35      70 ..     104     138 ..      98     158 .. 0.78
   2 ?    8.7   0.0   0.00047       1.4      33      66 ..     221     255 ..     215     269 .. 0.78
   3 ?   -0.9   0.0      0.42   1.3e+03      42      70 ..     386     414 ..     376     445 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.026
    RRM_Rrp7  35 nndeessrslFlvNlPiettletlkkffqkvalgat 70 
                  n +  s+s+F+ Nl    t e l+++f  +   ++
  CCD25794.2 104 VNRN-YSNSIFVGNLTYDCTPEDLREYFSGIGEVVR 138
                 4444.49*********************98855544 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00047
    RRM_Rrp7  33 tknndeessrslFlvNlPiettletlkkffqkv..a 66 
                 t++++ + +  +F+ NlP   + + lk +f++    
  CCD25794.2 221 TRQPNRQ-GYKVFIANLPFSINWQALKDMFKEFgdV 255
                 5666655.889*******************997544 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.42
    RRM_Rrp7  42 rslFlvNlPiettletlkkffqkvalgat 70 
                 + ++  NlP  t+ + l   f+ +   + 
  CCD25794.2 386 HLIYCNNLPASTARSDLYDLFESIGRISN 414
                 55677799999999999998888744443 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0029       8.7      15      52 ..     124     165 ..     120     166 .. 0.81
   2 ?    4.8   0.0    0.0091        27      15      49 ..     400     439 ..     394     441 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0029
  Nup35_RRM_2  15 elVlehFasfGeIvkhyvp....kevsvmyvkfesekdaekA 52 
                  e+ +e+F  +Ge+v+ ++       +   +v+f ++kd e A
   CCD25794.2 124 EDLREYFSGIGEVVRADIItskgHHRGMGTVEFTNSKDVEDA 165
                  5789***********766656777778889999998888877 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0091
  Nup35_RRM_2  15 elVlehFasfGeIvkhyvp.....kevsvmyvkfesekda 49 
                  ++ ++ F+s+G+I + +         +s ++v++ +  da
   CCD25794.2 400 SDLYDLFESIGRISNAELKyndkgEPTSEAVVEYINLEDA 439
                  667788*********7777777885589999999887777 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.7   4.9e+03      42      68 ..     153     179 ..     145     181 .. 0.79
   2 ?    5.5   0.0    0.0053        16       8      70 ..     235     301 ..     231     304 .. 0.70
   3 ?    3.2   0.0     0.026        77       8      71 ..     392     459 ..     385     462 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.7
  RRM_occluded  42 ivefkdekiagkasLaLdgsefegkkl 68 
                    vef+++k++  a+ + dgs f ++++
    CCD25794.2 153 TVEFTNSKDVEDAIRQYDGSYFLDRQI 179
                   699999999988888888888877766 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0053
  RRM_occluded   8 plsDtvnkariralveekegeikkivLvpdheG.....AivefkdekiagkasLaLdgsefegkklrc 70 
                   +l+  +n + ++++++e  g++ +  ++ d +G       v+++++++  ka+  L+g+e+eg+++ +
    CCD25794.2 235 NLPFSINWQALKDMFKEF-GDVLRADIELDSRGrsrgfGTVILREKSAMEKAIATLNGTEMEGRRIDV 301
                   566666666777777777.666544444444442233357999999999***************9975 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.026
  RRM_occluded   8 plsDtvnkariralveekegeikkivLvpdheG.....AivefkdekiagkasLaLdgsefegkklrcG 71 
                   +l+    ++ + +l+e+  g+i +  L  + +G     A+ve+ + ++a  ++  L+g+++ g +l+++
    CCD25794.2 392 NLPASTARSDLYDLFESI-GRISNAELKYNDKGeptseAVVEYINLEDADVCIERLNGYNYGGCELQIS 459
                   566666667777777777.77777777777777777779************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      257  (0.0143343); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3307.20
//
Query:       CCD25795.2  [L=373]
Description: hypothetical protein NDAI_0G00190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-92  309.8  24.1    1.4e-92  309.5  24.1    1.1  1  Ribosomal_L27_C  Ribosomal L27 protein C-terminal domain
      1e-31  108.8   0.1    1.8e-31  108.0   0.1    1.4  1  Ribosomal_L27    Ribosomal L27 protein


Domain annotation for each model (and alignments):
>> Ribosomal_L27_C  Ribosomal L27 protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.5  24.1   1.5e-96   1.4e-92       1     240 []     126     373 .]     126     373 .] 0.98

  Alignments for each domain:
  == domain 1  score: 309.5 bits;  conditional E-value: 1.5e-96
  Ribosomal_L27_C   1 tdekaaekEeeslsRkeylakdeilkklqereskreelkeeykkvlkeelkLdls.eedlelatsyLlrlrsllknGfsledAqfnakyylele 93 
                      ++ek a++Eee+l+Rk+ l+k++il+klq+r+skr el+++y+k++k+++kL ++ eedl lat+yL rlrs+lknGf+ledAqf++k+yle++
       CCD25795.2 126 KNEKVAQMEEETLPRKQDLLKSSILEKLQSRDSKRVELEDQYSKLVKDQFKLPITdEEDLPLATKYLARLRSSLKNGFPLEDAQFYSKCYLEMN 219
                      699*************************************************998789************************************ PP

  Ribosomal_L27_C  94 lkLkakreelskekleeklkelkevtekldksvsfdnklelikyiseeekqelknellkkLkekaseiltkkdkkevkelfkdasefltlseev 187
                      +kLk+++e++s++ +e+++++++e+t++ldksvsf+nkl+li y+s+e++++lk+e+++kL++++ ei+tkkd+k++kelf+da++fltlseev
       CCD25795.2 220 MKLKSQKEKWSQDIIEKEQTRIAELTTLLDKSVSFSNKLDLIPYLSQETRNNLKSEFIDKLRTNFPEIKTKKDRKAIKELFNDANRFLTLSEEV 313
                      ********************************************************************************************** PP

  Ribosomal_L27_C 188 kLrrkfLkpVlpe.tketvae......kkkkktivikrFnyekkkidvivRskeaFlskl 240
                      kLrr++Lkp+++e  ++t+++      k++kk+++ikrFnye++++d+ivR+++aFl+kl
       CCD25795.2 314 KLRRTYLKPIMSEsLEDTLIKdknidkKTMKKITIIKRFNYERHRVDTIVRTNSAFLNKL 373
                      **************9999999899998999****************************97 PP

>> Ribosomal_L27  Ribosomal L27 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.1     2e-35   1.8e-31       2      78 ..      20      99 ..      19     100 .. 0.94

  Alignments for each domain:
  == domain 1  score: 108.0 bits;  conditional E-value: 2e-35
  Ribosomal_L27  2 hkkagGstkngrdskgkrlGvKkfggqlvkagnIivrQrgtkfhpGenvgiGkdhtlfAlvdGvVkfe...kkkkrkyvs 78
                   +k+a+Gs +  +ds+g+rlG Kk++gq+vk+g+I++rQrgtkf+pGenvgiGkdhtlfAl++G+V+++    + krk+  
     CCD25795.2 20 TKRAAGSRTSMKDSAGRRLGPKKYEGQQVKTGQILMRQRGTKFYPGENVGIGKDHTLFALEPGIVRYYldpFHPKRKFLG 99
                   89******************************************************************765488999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1030  (0.0574488); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2759.49
//
Query:       CCD25796.2  [L=401]
Description: hypothetical protein NDAI_0G00200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-87  291.4  15.3      8e-87  291.2  15.3    1.1  1  KCH       Fungal potassium channel


Domain annotation for each model (and alignments):
>> KCH  Fungal potassium channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.2  15.3   4.5e-91     8e-87       1     250 [.      15     273 ..      15     274 .. 0.96

  Alignments for each domain:
  == domain 1  score: 291.2 bits;  conditional E-value: 4.5e-91
         KCH   1 kfdfidledFksksfltvlkYil.lwvllllslavyvsDiytavkLLafnkwsne.ikpaipfkiskwiFsgcIilsfvllayeaikairiirsrniae 97 
                 kf   d++ Fk  +f+t  +Y+l +w +++l++a+++sDiyt++kLLafn+wsn+ +kp++pf+iskw+Fs+cI++s++ll+y++i+++ri+ ++ i++
  CCD25796.2  15 KFAEFDIDTFKVANFKTLSNYVLlIWGISFLKTALLISDIYTCIKLLAFNTWSNDyVKPFLPFRISKWLFSTCILISVLLLLYDVINGLRIYGTKVITT 113
                 79999*****************99*************************************************************************** PP

         KCH  98 aylnnlarrlyslrsYkrFcvfeeitkskkkadkvalfvyfelkswlrllladgPRqviNaltLysvlkaklkekgekk......leslsglfekikal 190
                 +y+nn+ar+  sl++Y+ Fc+fe+i +++++ +k+a+f yfelks+lrlllad+PRqviN+ltL+s l a +++ ++ +      lesl+gl++kik++
  CCD25796.2 114 CYMNNFARTSLSLSNYSVFCFFENI-TPDNRLQKIAFFSYFELKSCLRLLLADSPRQVINGLTLWSTLIAVNNSGDDPQssdlkkLESLHGLINKIKRI 211
                 *************************.9*****************************************999887644335789999************* PP

         KCH 191 aeenleeavilsfmlftvviwvlsilklivavilyipllvkiikked..gsLkeYccrkvdk 250
                  e+n+eeavilsfmlf++++w+++i k+i+a+++  +++ +++++ +  g+L+eY+  +++ 
  CCD25796.2 212 GETNHEEAVILSFMLFSFILWTFFISKFIAALCCLYYVYKRLKNEYHlkGGLREYIWITINY 273
                 *******************************************99888899********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2758.75
//
Query:       CCD25797.2  [L=282]
Description: hypothetical protein NDAI_0G00210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2121.52
//
Query:       CCD25798.2  [L=654]
Description: hypothetical protein NDAI_0G00220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1005  (0.0560544); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4916.00
//
Query:       CCD25799.2  [L=151]
Description: hypothetical protein NDAI_0G00230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-09   38.3   0.2    1.5e-09   38.1   0.2    1.1  1  Sedlin_N  Sedlin, N-terminal conserved region


Domain annotation for each model (and alignments):
>> Sedlin_N  Sedlin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.2   8.2e-14   1.5e-09       2     112 ..      12     125 ..      11     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 8.2e-14
    Sedlin_N   2 igkkdnplyelefssskekeekelkeL.nqfilhasLDivedlqwk....tnnlylgkvdkfeklsvsa.yvtnskikflllhesssskkkdekikqff 94 
                 i ++d+p+    f   +e+ ++ +k L ++  ++ sLD++e++  +    ++ + ++ + ++e++sv + ++ ++++k+++  + +  + +d+++  +f
  CCD25799.2  12 IDTRDVPIIV--FVPRQES-DDVNKVLkYNTFSNISLDYFESRLINwsitDDVTPIKLLFQLEGVSVFGmFIKQTNLKIVIGFTGNLPDPTDNALVGIF 107
                 6677888755..4444433.345788899999**********98777787778889999999*****996799***********99999********** PP

    Sedlin_N  95 qevhelyvktlmnPFykv 112
                 + v ++y+++ +nPF + 
  CCD25799.2 108 KSVRKTYIDIKCNPFLNY 125
                 ***************854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1123.40
//
Query:       CCD25800.2  [L=634]
Description: hypothetical protein NDAI_0G00240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4411.36
//
Query:       CCD25801.2  [L=480]
Description: hypothetical protein NDAI_0G00250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-74  251.3   0.0    2.1e-74  251.1   0.0    1.0  1  FAD_binding_2  FAD binding domain
    1.1e-11   45.0   0.0    3.8e-08   33.3   0.0    2.4  2  DAO            FAD dependent oxidoreductase
    1.6e-06   28.2   0.0    4.3e-06   26.9   0.0    1.8  1  NAD_binding_8  NAD(P)-binding Rossmann-like domain
    2.1e-06   27.2   0.8    0.00023   20.5   0.1    2.4  2  Thi4           Thi4 family
    4.1e-06   26.2   3.3    3.5e-05   23.2   1.3    2.5  2  Pyr_redox_2    Pyridine nucleotide-disulphide oxidoreductase
    2.7e-05   23.2   0.3     0.0081   15.0   0.0    2.1  2  MCRA           MCRA family
    0.00012   21.3   0.0      0.025   13.6   0.1    2.4  2  Lycopene_cycl  Lycopene cyclase protein
     0.0002   20.7   0.6       0.28   10.4   0.0    2.7  3  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
    0.00075   18.3   2.4       0.32    9.6   0.1    2.9  3  HI0933_like    HI0933-like protein
  ------ inclusion threshold ------
      0.011   16.2   0.3        8.4    7.0   0.0    2.8  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
      0.012   15.0   0.7        5.9    6.2   0.0    2.7  3  GMC_oxred_N    GMC oxidoreductase
      0.015   14.7   0.2       0.04   13.3   0.2    1.7  1  FAD_oxidored   FAD dependent oxidoreductase
      0.022   14.0   0.0      0.079   12.2   0.1    1.7  2  FAD_binding_3  FAD binding domain
      0.047   12.8   0.9        3.8    6.5   0.0    2.8  3  GIDA           Glucose inhibited division protein A
      0.066   11.7   0.8       0.43    9.1   0.0    2.0  2  Mqo            Malate:quinone oxidoreductase (Mqo)
      0.073   12.3   0.0       0.92    8.7   0.0    2.1  2  Amino_oxidase  Flavin containing amine oxidoreductase
      0.074   13.0   0.1       0.34   10.9   0.1    2.2  1  NAD_binding_9  FAD-NAD(P)-binding


Domain annotation for each model (and alignments):
>> FAD_binding_2  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.1   0.0     2e-77   2.1e-74       2     417 .]      18     462 ..      17     462 .. 0.91

  Alignments for each domain:
  == domain 1  score: 251.1 bits;  conditional E-value: 2e-77
                    EEEE--SHHHHHHHHHHHHTTT.-EEEEESSSGGGSGGGG--S-EE-TT..SSGGSTC.CHHHHHHHHHHHHTTT-S-HHHHHHHHHTHHHHHHHH CS
  FAD_binding_2   2 viViGsGlAGLaAAleaaeaGl.kvavvekeqefggatawsqGgidavlspeqkkagikdspelhrtdtlkaldeladqplveafveaapeavdeL 96 
                    v++iGsGlAGLa+A ++ ++ +  ++++eke++ gg++  ++ gi+ + +++q +++++d+pel ++dt k++ + + + l++ +++ ++ av++L
     CCD25801.2  18 VVIIGSGLAGLASANQLVNKYKiPIVILEKESSLGGNSIKASSGINGAHTTTQSNLNVNDTPELFFNDTTKSAKGKGVETLMDKLAKDSHLAVEWL 113
                    9******************9999************************************************************************* PP

                    HHT.T----BCCTSSB-EEE-TT-SSTEEEE-.STT-......HHHHHHHHHHHHHHTCT......EEEEESEEEEEEEECTTEEEEEEEEETTTT CS
  FAD_binding_2  97 eel.gvpfsrtedgpvdvrelGglsatartlhdaadarretlvtghallarlvesarkag......vdfqerteadeLivedgrvtGavvenpesg 185
                    ++   ++++        +++lGg+s + rt+++ ++     l +g++++ +l +++++++      v++    +++++ ved++vtG+++ n ++ 
     CCD25801.2 114 QSEfDLKLDL-------LAQLGGHSVP-RTHRSSGK-----LPPGFEIVSALSKNLKNLAesnpelVKINLDSKVTDIKVEDKKVTGVEFINTQND 196
                    *997788888.......**********.99995554.....79*************9988999****************************99999 PP

                    CEEEEEESEEEE-----GG............GSSSBSSGTT-S-HHHHHHHCTTSSEES..TT-EEEEEEEET....TTTB...B--THHHHTT-E CS
  FAD_binding_2 186 revrirakavvlatgGfgr..allkellgaaaeaettnapavtGdglalalragaalnddrmeevqfhPtslvpirdgsgi...LitealrgeGgi 276
                    + ++++  +v+  +gGfg   ++l+e+++ +++  ttn ++ tGdg+++    ga+l d  m+++q hPt+ v+++d++     L  ealrg Ggi
     CCD25801.2 197 KVETLNTSNVIFCSGGFGFskEMLQEYAPDLVNLPTTNGKQTTGDGQKILSKLGADLID--MDQIQVHPTGFVDPQDPESHwkfLAAEALRGLGGI 290
                    99999999***************************************************..************99999999999************ PP

                    EE-.TTSSBTHGGGS-HHHHHHHHH.HHHHTTTSCCBEEEE-TT.................................SSHHHHHHHSHHHHHHHHH CS
  FAD_binding_2 277 lvd.kdGrrFmnelasrdvvsrailekeiaeggseanvyldash................................gldaegleatleaineeaan 339
                    l+  ++G+rF+nel++rdvv++ai  +  +  ++  +  ++  +                                 + ++ l+++l+++ ++a++
     CCD25801.2 291 LLSpSTGKRFVNELDTRDVVTEAIQIQCSKANNK--ALLVLGEGiyedlknnldfymfkklikkitlkqvvedyklPITSDELAEHLNQYSTAAKD 384
                    *************************444444443..434444448888888***********************999999*********9999999 PP

                    CCT.........S-TTTSEEE.......EEEEEEEES-EEEBETTSBESTTEEESS.BTEEE-STCEESSSSTTS--TTHHH CS
  FAD_binding_2 340 gldkdfg...rgidpadrpipgpfyavkvvpaqhytmgGvetdengrvldadgqpi.pGLYAaGevaaggvhganrlgGnsl 417
                     +  +      g +++ +++    +  +v+p +h+tmgG +++++++v+++dgq++ +GLYAaGev  ggvhganrlgG+sl
     CCD25801.2 385 TFNRPLVvknLGDEITSETNV---FIGEVTPVVHFTMGGAKINTKSQVINKDGQILaQGLYAAGEVS-GGVHGANRLGGSSL 462
                    888654311134444444444...7778**************************9846*********.************98 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   3.6e-11   3.8e-08       2      93 ..      18     136 ..      17     168 .. 0.82
   2 !    9.7   0.0   0.00056      0.59     161     208 ..     167     218 ..     149     237 .. 0.70

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 3.6e-11
                 EEEECTSHHHHHHHHHHHHT.T..EEEEESSSSTTSSGGGSSEEEEESSSSTHHSTH........................HHHHHHHHHHHHHHHHHH CS
         DAO   2 vviiGGGiiGlstAyeLarr.g..VtllekgdiagsgaSgrnsgllhsglrylpeas........................elarlslealeelrelee 73 
                 vviiG+G +Gl+ A +L  + +  +++lek++ +g g S ++s  + +++ +++++                          + +l+++++   ++l++
  CCD25801.2  18 VVIIGSGLAGLASANQLVNKyKipIVILEKESSLG-GNSIKASSGINGAHTTTQSNLnvndtpelffndttksakgkgvetLMDKLAKDSHLAVEWLQS 115
                 9****************9664588***********.************997566555889999999**************87779******99999999 PP

                 HHSSTTS.EEEEEEEEEESSH CS
         DAO  74 elgidid.yrrtGllslaade 93 
                 e ++++d + + G  s+ +++
  CCD25801.2 116 EFDLKLDlLAQLGGHSVPRTH 136
                 988877767777777766544 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00056
                 -EEEESECEEEEEEEETCEEEEE..EECTEEEEEEEE..EEE--GGGHHHH.H CS
         DAO 161 veilegtevtgleeedgkvwgve..rttpgendaada..vVnaaGawsdll.g 208
                 v+i + ++vt+++ ed+kv+gve  +t +  +++ ++  v+ + G + +++ +
  CCD25801.2 167 VKINLDSKVTDIKVEDKKVTGVEfiNTQNDKVETLNTsnVIFCSGGF-GFSkE 218
                 8888999*****************744443223334456****9987.34444 PP

>> NAD_binding_8  NAD(P)-binding Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   4.1e-09   4.3e-06       1      38 [.      20      58 ..      20      82 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 4.1e-09
                   EE--SHHHHHHHHHHHCC.TEEEEEE-SSSSSSGGG-EE CS
  NAD_binding_8  1 IvGaGlsGlvaAylLaka.gfdvlllekrdrlGGraasy 38
                   I+G+Gl+Gl+ A  L ++ ++ +++lek ++lGG++  +
     CCD25801.2 20 IIGSGLAGLASANQLVNKyKIPIVILEKESSLGGNSIKA 58
                   9*************9875599*************98655 PP

>> Thi4  Thi4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   2.2e-07   0.00023       6      57 ..       3      55 ..       1      63 [. 0.85
   2 ?    4.7   0.0     0.015        16     198     232 ..     424     458 ..     406     460 .. 0.79

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 2.2e-07
                HHHHHHHHHHTEEE.EEEE--SHHHHHHHHHHHHCTTS-EEEEESSSS--TTT CS
        Thi4  6 eryfedllkyaesD.vvivGaGssGLtaayylakkpdlkvailersvspGGGa 57
                ++  +dl ++  s+ vvi+G+G +GL++a  l +k ++ ++ile++ s+GG +
  CCD25801.2  3 STITTDLKNLSISEpVVIIGSGLAGLASANQLVNKYKIPIVILEKESSLGGNS 55
                5666777777665449*******************9**************975 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.015
                 HHHHHHHHHHECEEETTEEE-THHHHHHHT-EB-- CS
        Thi4 198 ekaedaivkktrevvpnlyvaGmevaevdganRmG 232
                 ++  + i k+ +   ++ly+aG  +  v+ganR+G
  CCD25801.2 424 NTKSQVINKDGQILAQGLYAAGEVSGGVHGANRLG 458
                 4444444455666679******************9 PP

>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   1.3   3.4e-08   3.5e-05       3     111 ..      18     214 ..      16     246 .. 0.81
   2 ?    2.1   0.0     0.085        90     248     279 ..     419     449 ..     373     460 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.4e-08
                  EEEE--SHHHHHHHHHHHH.HTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH.......................................... CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................... RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaq.agakvtlvelegtclnggcllskallgvaedaeias.......................................... 57 
                  vv+iG+G AGla a +l + +++ ++++e+e  + ++ +  s+ + g+   ++  +                                          
   CCD25801.2  18 VVIIGSGLAGLASANQLVNkYKIPIVILEKESSLGGNSIKASSGINGAHTTTQSNLnvndtpelffndttksakgkgvetlmdklakdshlavewlqs 115
                  9******************66999999976666666666667777777777765558999999999******************************** PP

                  .........................................HHHHCHHHH.CCCCHCCTCEEEEESCEEEEETEEEC......TCEEEEEESEEEE-- CS
                  .........................................xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxx RF
  Pyr_redox_2  58 .........................................evvkklnqg.ielllgeevvkidpgkkkvklekkke......gdeekiaydklvlAt 107
                                                           +++ + n + ++  l+++v++i  + kkv+     e      ++ e++   +++ ++
   CCD25801.2 116 efdlkldllaqlgghsvprthrssgklppgfeivsalsknlKNLAESNPElVKINLDSKVTDIKVEDKKVTGV---EfintqnDKVETLNTSNVIFCS 210
                  *******************************666666665544444455545555556677776666666663...266677799999********** PP

                  -EEE CS
                  xxxx RF
  Pyr_redox_2 108 Gssp 111
                  G+  
   CCD25801.2 211 GGFG 214
                  9754 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.085
                  CT-EEEETTEEE--TTSBESSTTEEE-GGGCT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 248 lglelderggivvdeflrtnvpgiyaiGDvag 279
                   g ++ ++   v+++ ++   +g+ya+G v g
   CCD25801.2 419 GGAKI-NTKSQVINKDGQILAQGLYAAGEVSG 449
                  45555.66677899999************993 PP

>> MCRA  MCRA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.7e-06    0.0081       4      51 ..      18      62 ..      15     102 .. 0.85
   2 !    6.3   0.1    0.0034       3.5     221     273 ..     167     213 ..     157     237 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.7e-06
                EEEE--SHHHHHHHHHHHHTT---GGGEEEE-SS-------------- CS
        MCRA  4 aylvGsGiasLaaAvyLirdakvpgenihileelkvaggsldgagdpe 51
                + ++GsG+a+La+A  L+++ k+p   i ile+++++gg   +a++  
  CCD25801.2 18 VVIIGSGLAGLASANQLVNKYKIP---IVILEKESSLGGNSIKASSGI 62
                579********************8...**********99877766554 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0034
                 -EEE-SEEEEEEEEEEE.TTEEEEEEEEEEE.TTEEEEEE--TTEEEEEE--- CS
        MCRA 221 VdfqfntkVtdiefeeeeedkktvteielekeegeeetieleedDlvfvtnGs 273
                 V+++++ kVtdi++e+     k+vt++e+ ++ ++++  +l++++++f++ G 
  CCD25801.2 167 VKINLDSKVTDIKVED-----KKVTGVEFINT-QNDKVETLNTSNVIFCSGGF 213
                 8999***********3.....46999999974.45567889999999987775 PP

>> Lycopene_cycl  Lycopene cyclase protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   2.4e-05     0.025       2      36 ..      18      51 ..      17      57 .. 0.88
   2 !    5.1   0.0    0.0096        10     260     332 ..     284     355 ..     245     360 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.4e-05
  Lycopene_cycl  2 vvviGaGpAglslAarlteakpglkvvlieaspsl 36
                   vv+iG+G+Agl+ A++l  +k+++ +v++e   sl
     CCD25801.2 18 VVIIGSGLAGLASANQL-VNKYKIPIVILEKESSL 51
                   8****************.899*******9876665 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0096
  Lycopene_cycl 260 aiGaaaglvhPaTGYsvarslaeapllasaiaaalres.slsarawatlwprerkrqreffrllglalllkldi 332
                      G+ + l  P+TG  +++ l   +++++ai     +  + +  +  +   ++ k++  f+ ++  +l++k+ +
     CCD25801.2 284 LRGLGGILLSPSTGKRFVNELDTRDVVTEAIQIQCSKAnNKALLVLGEGIYEDLKNNLDFY-MFK-KLIKKITL 355
                    45889999***********************765554436677788888888899999999.887.78887765 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00026      0.28       1      31 [.      19      50 ..      19      85 .. 0.86
   2 !    7.9   0.0    0.0015       1.6     214     276 ..     152     222 ..     115     240 .. 0.65
   3 ?   -2.7   0.1       2.5   2.7e+03     108     137 ..     414     444 ..     399     455 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00026
  Pyr_redox_3  1 iIiGaGPaGlaaaielkkagledylilEkg.n 31
                 +IiG G aGla+a +l ++    ++ilEk+ +
   CCD25801.2 19 VIIGSGLAGLASANQLVNKYKIPIVILEKEsS 50
                 7*************997766669******943 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0015
  Pyr_redox_3 214 ienrleelvke..ekikvlfnaevkeikekeeeyk....vktedgkkvev..kddvvla.tGykpdlsflkk 276
                    ++l++l ++  e +k+  +++v++ik ++++++    ++t++ +kve+  +++v+++  G+  + ++l++
   CCD25801.2 152 LSKNLKNLAESnpELVKINLDSKVTDIKVEDKKVTgvefINTQN-DKVETlnTSNVIFCsGGFGFSKEMLQE 222
                  55566666665566678888888888887777763222233444.333334456677776677777777664 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.5
  Pyr_redox_3 108 kk.edegfevetsketyeAkkviiAtGefdk 137
                   + + +g +++t++++++ +  i+A G +  
   CCD25801.2 414 VHfTMGGAKINTKSQVINKDGQILAQGLYAA 444
                  4436677889999999999989999988865 PP

>> HI0933_like  HI0933-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1    0.0003      0.32       3      36 ..      18      52 ..      16      76 .. 0.87
   2 !    7.4   0.0    0.0014       1.5      62     165 ..     101     213 ..      89     218 .. 0.67
   3 ?   -1.7   0.1      0.88   9.2e+02     374     385 ..     437     448 ..     414     474 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0003
                 EEEE--SHHHHHHHHHH.HHTT--EEEE-SSSSS- CS
  HI0933_like  3 viviGgGaAGlmaAisa.akrgkrVlllekakklg 36
                 v++iG G AGl  A ++ +k +  +++lek+++lg
   CCD25801.2 18 VVIIGSGLAGLASANQLvNKYKIPIVILEKESSLG 52
                 9***************9899999********9997 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0014
                  S...STTTTHHHH.HHS-.HHHHHHHHHHTT--EEE-STTEEEETT.-CHHHHHHHHHHHHH......HT-EEE-S--EEEEECETTE.EEEEE.... CS
  HI0933_like  62 rypenpkflksal.srft.nedlialveelgvelkeedsgrlFpvsdkaedivdallkelke......agvklrletevksvekeedgkfrvkt.k.. 148
                  ++++ ++   ++l s+f+ + dl+a +  + v+ + ++sg+l p      +iv+al k+lk+      + vk++l+++v++++ e++++  v+  +  
   CCD25801.2 101 KLAKDSHLAVEWLqSEFDlKLDLLAQLGGHSVPRTHRSSGKLPPGF----EIVSALSKNLKNlaesnpELVKINLDSKVTDIKVEDKKVTGVEFiNtq 194
                  5555555544444246663448888888888999999999998888....555555555444111122569***********9999998887764322 PP

                  ..TTEEEEESEEEE----S CS
  HI0933_like 149 ..seeeleadklvlAtGGl 165
                    + e+l+++++++ +GG 
   CCD25801.2 195 ndKVETLNTSNVIFCSGGF 213
                  2255688999999999996 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.88
                  TSTTEEE-GGGB CS
  HI0933_like 374 kvpgLffaGEvl 385
                    +gL+ aGEv 
   CCD25801.2 437 LAQGLYAAGEVS 448
                  5689******94 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0079       8.4       2      34 ..      18      51 ..      17      60 .. 0.77
   2 ?    6.3   0.0     0.013        14      42      78 ..     152     190 ..     130     194 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0079
                EEEECSSHHHHHHHHHHHH.TTSEEEEEESSSSS CS
   Pyr_redox  2 vvvvGgGyiglElAgalae.lgkkVtvversdkl 34
                vv++G+G+ gl  A+ l + ++  + ++e ++ l
  CCD25801.2 18 VVIIGSGLAGLASANQLVNkYKIPIVILEKESSL 51
                8****************66266566666665555 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHT..TEEEECSEEEEEEEEETTSEEEEEE CS
   Pyr_redox  42 askilqeklekn..gievllntkveeiegsedgvesvkl 78 
                 +sk+l++  e n   +++ l++kv+ i+ ++++v++v++
  CCD25801.2 152 LSKNLKNLAESNpeLVKINLDSKVTDIKVEDKKVTGVEF 190
                 6777777777778789***************99***987 PP

>> GMC_oxred_N  GMC oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0056       5.9       4      78 ..      19      93 ..      17      95 .. 0.86
   2 ?    6.1   0.0    0.0059       6.3     210     257 ..     169     213 ..     151     221 .. 0.82
   3 ?   -1.5   0.0       1.2   1.3e+03      77      98 ..     454     475 ..     451     478 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0056
  GMC_oxred_N  4 lveggGsagsvvAaRLsedpstsvlvleaggreknrl.imvlalalklidkklntayetepekalngrrlilpaGk 78
                 +++g+G+ag + A+ L ++ ++ +++le +++      +   ++   +++ ++n ++  +pe+  n ++    +Gk
   CCD25801.2 19 VIIGSGLAGLASANQLVNKYKIPIVILEKESSLGGNSiKASSGINGAHTTTQSNLNVNDTPELFFNDTTKSA-KGK 93
                 799***************************998888867777888888899999999999999999887766.666 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0059
  GMC_oxred_N 210 iltgakaekiilegrkkravGVeasdkkgtvkrlvvaakevvvaaGal 257
                  i  + k++ i  + ++k+++GVe+ ++++  k  + +  +v+ ++G +
   CCD25801.2 169 INLDSKVTDI--KVEDKKVTGVEFINTQND-KVETLNTSNVIFCSGGF 213
                  5566778888..445************999.88888899999999976 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.2
  GMC_oxred_N  77 GktlGGgsvvNwsayiRtpaad 98 
                  ++ lGG+s+    ++ Rt a+ 
   CCD25801.2 454 ANRLGGSSLLECVVFGRTAADS 475
                  5789**********99998876 PP

>> FAD_oxidored  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   3.8e-05      0.04       2     142 ..      18     209 ..      17     212 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.8e-05
  FAD_oxidored   2 vvVvGGgpaGvaAAiaAaraGa.kvlLveergvlGGlltsglvatdignkaee...................qvvtgiareflerlrqrggarlkkr 78 
                   vv++G+g+aG+a A +  ++ +   +++e++  lGG++ ++  +     ++ +                   ++ ++ ++ ++++l+++ +     +
    CCD25801.2  18 VVIIGSGLAGLASANQLVNKYKiPIVILEKESSLGGNSIKASSGINGA-HTTTqsnlnvndtpelffndttkSAKGKGVETLMDKLAKDSHL----A 109
                   9***************9988775899***********87766433322.2222245556666666666666555555666666666553333....2 PP

  FAD_oxidored  79 skw.n..............................tfep.evakavleeml..aeagvtvllntrlvevekegkriesvtveske.g.rktirAkvf 139
                    +w +                               fe  +++ + l+++   + + v++ l+++++++++e+k++++v++ + +    +t++ + +
    CCD25801.2 110 VEWlQsefdlkldllaqlgghsvprthrssgklppGFEIvSALSKNLKNLAesNPELVKINLDSKVTDIKVEDKKVTGVEFINTQnDkVETLNTSNV 206
                   2332133445556666677777777777777787645541444555555555433578888888888888888888888888777545666666666 PP

  FAD_oxidored 140 iDA 142
                   i +
    CCD25801.2 207 IFC 209
                   655 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   7.5e-05     0.079       3      36 ..      17      51 ..      15      70 .. 0.81
   2 ?   -1.3   0.0      0.96     1e+03     106     168 ..     151     216 ..     123     222 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.5e-05
                   EEEEE--SHHHHHHHHHH.HHTTHHEEEEESSSSS CS
  FAD_binding_3  3 dVlIVGaGpaGlmlallL.seaGvrvvlvekrstt 36
                   +V+I+G+G+aGl +a+ L  ++ +  v++ek s+ 
     CCD25801.2 17 PVVIIGSGLAGLASANQLvNKYKIPIVILEKESSL 51
                   69***********9987725677889999998876 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.96
                    HHHHHHHHHHHHHT..EEETCSEEEECCEECCCCCCCE.EEECCTTEEEEEEEEEEEE--GTT-HH CS
  FAD_binding_3 106 eleriLvehaeerg..lqvrfktevesleqdeegvtae.vrdketgeeetvrakYlvGaDGgrStv 168
                     l + L + ae+ +  ++++ + +v+ ++ ++++vt + + + ++++ et++   ++ + Gg + +
     CCD25801.2 151 ALSKNLKNLAESNPelVKINLDSKVTDIKVEDKKVTGVeFINTQNDKVETLNTSNVIFCSGGFGFS 216
                    566777777788877788888888999999999998752558888888999999999999987665 PP

>> GIDA  Glucose inhibited division protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0036       3.8       2      21 ..      18      37 ..      17     101 .. 0.78
   2 ?    3.8   0.0     0.023        24     112     160 ..     168     222 ..     149     256 .. 0.69
   3 ?   -1.1   0.0      0.75   7.9e+02     355     366 ..     438     449 ..     382     455 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0036
                EEEE-SSHHHHHHHHHHHHT CS
        GIDA  2 viViGgGhAGceAAlaaarl 21
                v++iG G+AG++ A ++ ++
  CCD25801.2 18 VVIIGSGLAGLASANQLVNK 37
                9*************997653 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.023
                 EE.EES-EEEEEECTTEEEEE...EETTS..-EEEECEEEE--TT-BT-EEEETT CS
        GIDA 112 ei.ieeeveeliveekkvkgv...vtedg..etikakavviatGtflkgkihige 160
                 +i +  +v++++ve+kkv+gv    t+++  et+++++v+  +G f  +k ++ e
  CCD25801.2 168 KInLDSKVTDIKVEDKKVTGVefiNTQNDkvETLNTSNVIFCSGGFGFSKEMLQE 222
                 4424679***********9973223333322578888*******99877776654 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.75
                 SBTEEE-CGGGT CS
        GIDA 355 vkgLflAGqinG 366
                  +gL++AG+++G
  CCD25801.2 438 AQGLYAAGEVSG 449
                 356777777766 PP

>> Mqo  Malate:quinone oxidoreductase (Mqo)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1      0.13   1.4e+02       5      65 ..      18      80 ..      15      96 .. 0.75
   2 ?    9.1   0.0   0.00041      0.43     181     244 ..     151     215 ..     145     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.13
         Mqo  5 vvliGaGimsatlgvllkel.epelsievlerldkvaees...snawnnaGtGHsalcElnYtpe 65
                vv+iG+G+     ++  + + + ++ i +le+ ++ + +s   s+ +n a t  +++ ++n tpe
  CCD25801.2 18 VVIIGSGLAGL--ASANQLVnKYKIPIVILEKESSLGGNSikaSSGINGAHTTTQSNLNVNDTPE 80
                899**999654..4433333134678899999888877664438889999999999999999997 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00041
         Mqo 181 altrqllkalekkkg.velklkhevkdlkreedgkWkvkvkdlktgekkkvkakfvfiGaGGgal 244
                 al+++l + +e++ + v+++l+++v+d+k e+++   v++ ++++++ ++++++ v   +GG  +
  CCD25801.2 151 ALSKNLKNLAESNPElVKINLDSKVTDIKVEDKKVTGVEFINTQNDKVETLNTSNVIFCSGGFGF 215
                 567777777766654389*********************************99999888888644 PP

>> Amino_oxidase  Flavin containing amine oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00087      0.92       1      29 [.      25      54 ..      25      67 .. 0.93
   2 ?    1.4   0.0      0.15   1.5e+02     214     246 ..     157     191 ..      83     209 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00087
                   HHHHHHHHHHHHTT.EEEEEEESSSSSBTT CS
  Amino_oxidase  1 laGLaaArqLlsaG.fdVtvlEardrvGGR 29
                   laGLa A+qL ++    +++lE ++ +GG 
     CCD25801.2 25 LAGLASANQLVNKYkIPIVILEKESSLGGN 54
                   79***************************6 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.15
                    HHHHH.TTTTEEEETSEEEEEEEEETTC.EEEEET CS
  Amino_oxidase 214 ealae.elrgldirlntrVkeikregdg.vtvtle 246
                    ++lae     ++i l+++V++ik e+ +  +v++ 
     CCD25801.2 157 KNLAEsNPELVKINLDSKVTDIKVEDKKvTGVEFI 191
                    45666666688*************77773555555 PP

>> NAD_binding_9  FAD-NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00032      0.34       1      42 [.      19      56 ..      19     213 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00032
  NAD_binding_9  1 aivGaGprGlavlerLlarakkkspleitlfdp.sepgagrvw 42
                   +i+G G +Gla +++L+++     ++ i + ++ s++g g   
     CCD25801.2 19 VIIGSGLAGLASANQLVNK----YKIPIVILEKeSSLG-GNSI 56
                   7*****************9....6999******55557.5443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 3329.48
//
Query:       CCD25802.2  [L=152]
Description: hypothetical protein NDAI_0G00260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-14   51.1   0.4    1.4e-13   50.3   0.4    1.4  1  YL1_C     YL1 nuclear protein C-terminal domain
  ------ inclusion threshold ------
       0.42   10.9   3.7       0.89    9.8   3.7    1.6  1  RseA_C    Anti sigma-E protein RseA, C-terminal domain


Domain annotation for each model (and alignments):
>> YL1_C  YL1 nuclear protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.4   1.5e-17   1.4e-13       1      29 []     101     129 ..     101     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 1.5e-17
       YL1_C   1 yCdITGlpAkYrDPkTgLpYanveaykvI 29 
                 yCdITGl ++Yr P T+++Y+n+e+y+ I
  CCD25802.2 101 YCDITGLKGPYRSPTTNIRYHNAEIYQLI 129
                 9**************************87 PP

>> RseA_C  Anti sigma-E protein RseA, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.7   9.9e-05      0.89      27      52 ..      43      68 ..      23      70 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 9.9e-05
      RseA_C 27 qqaateeql.qeqrrRinayLqdheLQ 52
                 + a ++ l  e ++Rina+ q+ +++
  CCD25802.2 43 RHKAVKQ-LlSEENKRINAIFQQEQQD 68
                2333334.35999**********8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1768  (0.0986112); expected 358.6 (0.02)
Passed bias filter:                      805  (0.0448993); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1078.97
//
Query:       CCD25803.2  [L=1149]
Description: hypothetical protein NDAI_0G00270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00082   19.7   0.1     0.0048   17.2   0.1    2.4  1  fn3            Fibronectin type III domain
     0.0063   16.4   0.2      0.026   14.4   0.2    2.2  1  fn3_4          Fibronectin-III type domain
  ------ inclusion threshold ------
        1.6    8.9  10.5         11    6.2  10.5    2.6  1  SUIM_assoc     Unstructured region C-term to UIM in Ataxin3
        4.3    7.7  12.1       0.98    9.8   3.3    3.9  3  Lzipper-MIP1   Leucine-zipper of ternary complex factor MIP1


Domain annotation for each model (and alignments):
>> fn3  Fibronectin type III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   1.1e-06    0.0048       3      80 ..      40     120 ..      38     124 .. 0.77

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 1.1e-06
                 E.CEEEEEEESSSEEEEEEE-CS....SSSSTEEEEEEEEEETTSTSTEEEEEECSTSSEEEEESSSTTEEEEEEEEEEETSE CS
         fn3   3 P.snlsvsevtstsltvsWeppk....dgggpitgYeveyrekgseeewneftvprtttsvtltgLkpgteYevrVqavnggg 80 
                 P + +s+  ++++s+t++We  +    +   pi++Y + + ++ +     + +++  t  + +t+L p ++Y++   ++n+ g
  CCD25803.2  40 PaTKVSIDKISTNSITIHWENEPlkqsPNANPISHYLLYLNNS-QIAIFPNNSNSLYT-CCSITNLLPEKQYQLDFITINKMG 120
                 4499***************988877855667777887766555.44435555555556.9***************99999886 PP

>> fn3_4  Fibronectin-III type domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   5.9e-06     0.026       2      44 ..      38      82 ..      37     112 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.9e-06
       fn3_4  2 lPqkpqlkiaksvpkgivlsWnve..eldkkaaevesYelyayqe 44
                 P++ +++i k+++++i+++W+ e  +++++a+++++Y ly+ + 
  CCD25803.2 38 TPPATKVSIDKISTNSITIHWENEplKQSPNANPISHYLLYLNNS 82
                799*******************7778999************9754 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  10.5    0.0024        11      32      58 ..     757     783 ..     751     789 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0024
  SUIM_assoc  32 qqqqqqqqqqdppgqlshprekpttSs 58 
                  +qqqqqqqq+pp+q++ +   p+   
  CCD25803.2 757 ANQQQQQQQQQPPQQSPLVLSSPSQEH 783
                 5799************99988887655 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.3   0.00022      0.98       3      74 ..     343     409 ..     341     417 .. 0.80
   2 ?    0.9   0.7      0.13   5.7e+02       4      37 ..     438     471 ..     435     486 .. 0.69
   3 ?   -2.8   0.0       1.8   8.1e+03      18      35 ..     784     803 ..     783     811 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00022
  Lzipper-MIP1   3 sekrssLeqeveqLqerLqeeeklrraLekalssssdgsllslstllpkkakellkeiallEeevvkLEqkl 74 
                   +e++ +L+ e  +L+ + ++e +lr++L++ ++ s      +++ l++ k+ +l k ia l   ++k+++++
    CCD25803.2 343 QETDLELKLELDNLKLHWNHEIDLRKSLKSNIK-SL----ENSKLLSDLKIDKLNKKIAKLNDKILKMQKEM 409
                   67899***************************2.22....23334555688888888888888888888776 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.13
  Lzipper-MIP1   4 ekrssLeqeveqLqerLqeeeklrraLekalsss 37 
                   e+  +L++ ++ Lq++ + + + ++ L    +++
    CCD25803.2 438 ENIKNLNNQILILQNQINLQDDSNKKLNVLKKNK 471
                   5556899999999999999999998886444322 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.8
  Lzipper-MIP1  18 erLqeeeklrraLekal..s 35 
                   + Lq+e++    L +a+  +
    CCD25803.2 784 QVLQREQSAGNDLDQAFayD 803
                   679******99999999431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2122  (0.118356); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.47
# Mc/sec: 7274.52
//
Query:       CCD25804.2  [L=538]
Description: hypothetical protein NDAI_0G00280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   3.6e-127  424.5   0.0   4.6e-127  424.2   0.0    1.0  1  GDA1_CD39       GDA1/CD39 (nucleoside phosphatase) family
  ------ inclusion threshold ------
       0.08   12.4   0.0       0.13   11.7   0.0    1.2  1  Ppx-GppA        Ppx/GppA phosphatase family
       0.11   12.4   0.1       0.27   11.2   0.1    1.7  1  RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
        7.4    6.1  12.6         11    5.5  12.6    1.1  1  SR-25           Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> GDA1_CD39  GDA1/CD39 (nucleoside phosphatase) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.2   0.0    1e-130  4.6e-127       4     421 ..     106     535 ..     104     537 .. 0.96

  Alignments for each domain:
  == domain 1  score: 424.2 bits;  conditional E-value: 1e-130
   GDA1_CD39   4 ekenekygiviDAGSsgsrlhvykwkdekesllqivklieevkklePGlSsfekkpeeaaeylkpllelaeeviPeekrsetpvlikATAGlRLlkeek 102
                 + ++++++i+iDAGS+gsr+hvy++   ++++ +++   e +++l+PGlSsf++++e aa++l+plle a e +P++krs+tpv++kATAGlRLl e+k
  CCD25804.2 106 CTKDHSFVIMIDAGSTGSRIHVYEF---DTCTQPPTLINETFEMLKPGLSSFDTDAEGAAKSLDPLLEKALEAVPQDKRSCTPVAVKATAGLRLLGEAK 201
                 67899********************...8888888888888********************************************************** PP

   GDA1_CD39 103 kekilkalrnklkklsefkved..qgiriidGeeEGiYgWiaiNYllGkfnkeapevskqetvgvlDlGGaStQiafepqeeseiaekvedieelklqe 199
                 ++kil+a+r++l+++++f+v +  +gi+i+ G+ EG+Y+Wi++NYllG+++      sk  t++v+DlGG+StQi+fep+  +   ek+ d+ e+k ++
  CCD25804.2 202 SSKILQAVRSHLENDYPFPVVEgsAGIEIMSGDDEGVYAWITTNYLLGNIGTG----SKIPTTAVFDLGGGSTQIVFEPT--FPGEEKMIDG-EHKYDL 293
                 *********************9999**************************99....79*********************..**********.6***** PP

   GDA1_CD39 200 kledkkyklyvtsfLgyGanealrkklaklikkasee.............vlkdpClprglekt.vevkdle...fkqfaikgtgnyeqCrksikelln 281
                 ++ +++y+ly++s+LgyG+ ++++k ++ l+++a ++             +++ pClp+++++t vevk  +   +++f+ ++ +  +qCr + +++ln
  CCD25804.2 294 NFGGYDYTLYQFSHLGYGLMQGRNKINSILLESALKKgsivegdfksknnKISTPCLPPNVNATdVEVKLGDstyIIDFIGPKVPAGAQCRFLADHILN 392
                 **********************************9999***********************97625555433555899********************* PP

   GDA1_CD39 282 knakCkaeeClfngvfapsidllqklfgaseyfYtvsdvlklggek.....vklekltealrkfCk..knweeikaeskkskeksiseeeaCfkgayvl 373
                 k+akC +++C+fngv++ps   l+++f++ +++Y++s++++++++      ++l++l + +r +C+  ++w+++ +++++s+e+ +++ ++C+++++++
  CCD25804.2 393 KDAKCSNPPCSFNGVHQPS---LVRTFKETNDLYIFSYFYDRTRPLgmplsFTLNELVDLARLVCDsqQTWNSVLSGIDGSLEELEKDPYFCLDLSFQV 488
                 *******************...***********************9***99**************87699*****************99********** PP

   GDA1_CD39 374 slLhdGfdldktveelqsvekiaekelgWtLGamlnllkalklkkkls 421
                 slLh+G+d++ + +el++ ++ia++elgW+LGa+l ll+++++k+k++
  CCD25804.2 489 SLLHTGYDIPLH-RELKTAQTIAGNELGWCLGASLPLLESDNWKCKVK 535
                 ************.********************************986 PP

>> Ppx-GppA  Ppx/GppA phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.8e-05      0.13      66     128 ..     208     274 ..     178     279 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.8e-05
                 HHHHSTTHHHHHHHHCCCCSS-EEEE-HHHHHHHHHHHHHHHT..---SSEE....EEEEETTEEEEEE CS
    Ppx-GppA  66 alRdavNadeFlarvkkevglkveiisgeeEarliylgvvssl..lekgrgl....viDiGGGStElvl 128
                 a+R +  +d  +  v+++    +ei+sg +E+ ++     + l    +g+++    v D+GGGSt++v+
  CCD25804.2 208 AVRSHLENDYPFPVVEGSA--GIEIMSGDDEGVYAWITTNYLLgnIGTGSKIpttaVFDLGGGSTQIVF 274
                 4444444444444555544..4899******999876655554222333333333389*********97 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1     6e-05      0.27      27      66 ..      92     127 ..      65     134 .. 0.58

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 6e-05
                     HHHHHHHHHHHHHHHHHCSTTTSHHHHHHHCTSSS-HHHH CS
  RNA_pol_Rpb1_4  27 nkilnkardkagkiaskslaasNsiliMvksGaKGsiini 66 
                     +++++    +++++ sk++++  s++iM+++G+ Gs i +
      CCD25804.2  92 SSASSS---SSSSSGSKCTKD-HSFVIMIDAGSTGSRIHV 127
                     222221...133333444444.59************9876 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  12.6    0.0025        11       8      84 ..      26     106 ..      24     113 .. 0.36

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0025
       SR-25   8 srsreergeekkrkksskdssrsssa..sksqsrkassasekee..erskekkkkkrr.rssssssssssssssssssssss 84 
                 s+sre+  +  ++  ss  ++ s     +k+++ k+  +s++    ++sk  +k+ +       +ssss+ssssssss+s++
  CCD25804.2  26 SSSRETTIDIARNVASS-ATRPSVPPedTKETQFKTLPISNEPGyvTDSKTDSKNPKVaDAVKLTSSSSASSSSSSSSGSKC 106
                 55664444444444444.4434433300333334444455544465333333333222022222222222333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       769  (0.0428914); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.62u 0.30s 00:00:00.92 Elapsed: 00:00:00.46
# Mc/sec: 3536.67
//
Query:       CCD25805.2  [L=598]
Description: hypothetical protein NDAI_0G00290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-84  282.4   0.0      6e-84  281.7   0.0    1.3  1  NAD_kinase  ATP-NAD kinase


Domain annotation for each model (and alignments):
>> NAD_kinase  ATP-NAD kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.7   0.0   3.4e-88     6e-84       2     291 ..     185     482 ..     184     483 .. 0.98

  Alignments for each domain:
  == domain 1  score: 281.7 bits;  conditional E-value: 3.4e-88
                 EEEEESSCGGTCSHHHHHHHHHHHCT-..EEEEECCGGCCSSSTT--HHHHTTTT--.......EEECCC-TTTTTSSSEEEEEE-HHHHHHHHHHHHH CS
  NAD_kinase   2 vgivvnpikkeaieraeevarwLldalsrvlevtveeklgeslaeaaefrsevisvlkkvkttddtrkaleafadagvdliivvGGDGTaldvarllqk 100
                 +++v++  + ++i +++e+++wLl + + +l v+ve+++++s ++aa++ + + ++ +++ +  ++ ++l ++ ++ +dl i++GGDGT+l+v++l+qk
  CCD25805.2 185 LILVTKISDVSLIYLTRELVEWLLIT-FPNLVVYVEDDFKKSSQFAAKEICHDTNCTEARIK--YWNSELVKKNNDLFDLCITLGGDGTVLFVSSLFQK 280
                 6899999999****************.78*********************************..*********************************** PP

                 CT-EEEEEESSS--SS-SEEGGGHHHHHHHHHHT-SEEEEEEEEEEEEEETTE...............EEEEEEESSEEEEEESSSSS-EEEEEEETTE CS
  NAD_kinase 101 aeiPvlgvnaGvkgfltefepeaaaellekllegeirvekrevldavimrskgee.........diadiviensvlnevviirgpgstlielelyvdte 190
                  ++P +++++G++gflt+f++e +++ l+k+le++i++++r++l+++i+++++++         +i +++++++vlnev i+rg  +++++lel  d++
  CCD25805.2 281 SVPPTVSFSLGSLGFLTNFNFEYFKQDLRKILERKIKINLRMRLECKIYHRHKPKydhktgkkiCIMELMSTHHVLNEVIIDRGTSPFISMLELFGDGS 379
                 *****************************************************999******************************************* PP

                 EEEEEEESEEEEE-TGGGGTHHHHTT--EE-TT---EEEEEESESSS----EEE-TT-EEEEEE-..SS--EEEEETTTEEEEE-TT-EEEEEEESSEE CS
  NAD_kinase 191 lleadqldglivstPtGstayslsaGgplisPgvlailivpicPhslssrpiVvssssklrirva..srseallaldGseelelspgdevrvtasdkkf 287
                 l+++ q+dgliv+tPtGstayslsaGg l  P+++ai ++p+cPh+ls+rpiV++++++l+++v+  sr +a++ +dG+ + el++gd+v+++as+++f
  CCD25805.2 380 LMTVAQADGLIVATPTGSTAYSLSAGGALMYPSINAISVTPVCPHTLSFRPIVLPENMNLKVKVSlkSRGTAWASFDGKGRFELQKGDYVTISASPYAF 478
                 ******************************************************************9******************************** PP

                 EEEE CS
  NAD_kinase 288 klir 291
                  +++
  CCD25805.2 479 PTVE 482
                 9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1237  (0.0689944); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4402.94
//
Query:       CCD25806.2  [L=456]
Description: hypothetical protein NDAI_0G00300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-45  154.0   4.2    2.7e-45  154.0   4.2    2.0  1  Glyco_hydro_16  Glycosyl hydrolases family 16
     0.0087   16.0  13.2       0.01   15.8  13.2    1.1  1  SPX             SPX domain
  ------ inclusion threshold ------
      0.048   13.8   0.0        0.1   12.7   0.0    1.5  1  YcgR_2          Flagellar protein YcgR
       0.16   11.8   2.2       0.24   11.3   2.2    1.3  1  RIFIN           Rifin
          2    7.7  14.6        3.1    7.1  14.6    1.2  1  FAM76           FAM76 protein
        3.3    6.4  24.5        4.8    5.9  24.5    1.2  1  Apt1            Golgi-body localisation protein domain
        3.4    8.2  13.2        7.5    7.1  13.2    1.5  1  Chitin_bind_1   Chitin recognition protein
          4    6.5  28.6        5.3    6.1  28.6    1.1  1  SOG2            RAM signalling pathway protein
        4.2    6.1  12.6        5.9    5.6  12.6    1.1  1  NPR3            Nitrogen Permease regulator of amino acid tra
        7.1    7.1  15.9         10    6.6  15.9    1.2  1  SOBP            Sine oculis-binding protein
        7.8    4.5  14.0         12    3.9  14.0    1.2  1  Hid1            High-temperature-induced dauer-formation prot
        8.2    6.4  32.6         16    5.5  32.6    1.4  1  DUF4614         Domain of unknown function (DUF4614)
        8.6    4.8  25.3         13    4.2  25.3    1.2  1  Macoilin        Macoilin family
        8.9    6.6  10.2         13    6.0  10.2    1.2  1  GCOM2           Putative GRINL1B complex locus protein 2


Domain annotation for each model (and alignments):
>> Glyco_hydro_16  Glycosyl hydrolases family 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0   4.2   2.1e-48   2.7e-45       4     176 ..      96     269 ..      93     270 .. 0.92

  Alignments for each domain:
  == domain 1  score: 154.0 bits;  conditional E-value: 2.1e-48
                     TB-SEE-GGGEEEETTSEEEEEEEEEE.EEEEEECCEESSEEEEEEEE---STTEEEEEEEETGGTSTTEEEEEEEETT-TTEEEEEEEBTTBSG CS
  Glyco_hydro_16   4 efevtwsksavsvengetltltldkes.gsrikskksflyGkvearikaaksaGvvtafylssedekahdEiDiEflGndtgkvqtnvygkGkgk 97 
                     ++e+++s++ ++++++e+l l ++k+s gs ++s++  +yGkv++r+ka++ aGv+ta+ l s     +dEiD+Ef+G d +kvqtn+y++G+ +
      CCD25806.2  96 SAEWLYSGNVIDYDDEESLILAMPKNSgGSLLTSTRALWYGKVSVRMKASHLAGVITAMTLFS---GVQDEIDYEFVGADIEKVQTNYYWQGSLN 187
                     67899*********99***********7777888***************************99...89*************************** PP

                     .EEEEEETSS-TTTS-EEEEEEEETTEEEEEETTEEEEEEESSHHH.HT...-..-EESEEEEEEEEEEBSHHHSSE-EEEEEEE CS
  Glyco_hydro_16  98 .rekrlslwfdptedfHtYaieWtpdkikfyVDgkpvrtltkkeae.ev..ky..Pqftpmkvavslwpgsdwateqgkvkidwa 176
                      +++ + +++d  +++H Y+i+W++d+i+++VDg++ rtl k+++  ++  +y  Pq tp+kv++s+wpg++ +++ g  +i wa
      CCD25806.2 188 wTNSANITVDDVFDNYHIYEIDWHEDHITWSVDGVVGRTLFKNDTYnSTtkEYrfPQ-TPSKVHLSIWPGGNATNAPG--TIAWA 269
                     547788889*******************************999998544773455**.********************..99998 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8  13.2   8.2e-06      0.01     102     171 ..     352     427 ..     235     445 .. 0.54

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 8.2e-06
         SPX 102 rssrssssygglvssppsansssssddssesnpadssssssssesesssssspsllrrlfs......esesreeks 171
                  ss+ssss ++++ss++s+++ss+s+++s+ ++++++ssssss+++sss+ss s++ ++ +      +s+s++++s
  CCD25806.2 352 VSSSSSSSSSSSSSSSSSSKTSSHSSSKSSTSSSRTTSSSSSSTPRSSSQSSASSVTSTGNraatdiASQSNSSSS 427
                 2222222222222222222222222222222211222222222222222222222222211333244222222221 PP

>> YcgR_2  Flagellar protein YcgR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   8.1e-05       0.1      18      42 ..      98     124 ..      89     131 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.1e-05
                 E..EEEEEEEE.-TTEEEEEEEEET-S CS
      YcgR_2  18 r..yksrvvdikgddyliislPieegr 42 
                 +  y+ +v+d++++++li+++P ++g 
  CCD25806.2  98 EwlYSGNVIDYDDEESLILAMPKNSGG 124
                 23499******************9975 PP

>> RIFIN  Rifin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.2   0.00018      0.24     190     300 ..     345     456 .]     281     456 .] 0.64

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00018
       RIFIN 190 slvkaikeeyeescll..klkkskaaltsakekekkeasskekikkkvekivekaekkaaaaaaeaaaeataeaekaetaaveattaslqtaiiasiva 286
                 +l+++i+   ++s+ +  ++++s++ +ts+++++k+++ss+++++++++++ ++  ++ a++ +++ ++a++++ +++ +  +++t+s ++a ++ ++ 
  CCD25806.2 345 MLTTSISVSSSSSSSSssSSSSSSSSKTSSHSSSKSSTSSSRTTSSSSSSTPRSSSQSSASSVTSTGNRAATDIASQSNSSSSSATSSQNNASVINVTN 443
                 455555544433333322333333444444445555555555555555555556666666677777778888888888888888888888888888888 PP

       RIFIN 287 ivvIvLimvIIYLi 300
                 ++ I  ++ + YLi
  CCD25806.2 444 LLTIFSVI-VGYLI 456
                 88776554.45665 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  14.6    0.0024       3.1     140     224 ..     359     444 ..     346     449 .. 0.59

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0024
       FAM76 140 eeeeekrskskkkkskskkskkskekskekkaskkkskkhkkrssrlevskleeeklaee.kesnetskksldsnssdhlvavtqL 224
                 +++++++s+s++k+s++++sk+s+++s+++++s++++ +++++ss ++v+++ ++ +++  ++sn++s+++++s+++  +++vt+L
  CCD25806.2 359 SSSSSSSSSSSSKTSSHSSSKSSTSSSRTTSSSSSSTPRSSSQSSASSVTSTGNRAATDIaSQSNSSSSSATSSQNNASVINVTNL 444
                 3333334444444444444555555555666666667777777777788887755544440344445555888999999****998 PP

>> Apt1  Golgi-body localisation protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  24.5    0.0038       4.8     334     411 ..     353     434 ..     306     446 .. 0.40

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0038
        Apt1 334 ssssassssssssrssslelrlkptsstssssssessssssskkrsseesslessaserv....kssrasddleemksRask 411
                 ssss+ssssssss+sss++ +++++s++s+sss+++ssssss  rss++ss++s++s+      ++ ++s++ +   + +++
  CCD25806.2 353 SSSSSSSSSSSSSSSSSSKTSSHSSSKSSTSSSRTTSSSSSSTPRSSSQSSASSVTSTGNraatDIASQSNSSSSSATSSQN 434
                 1111111111111111111111112222222222222222222222222333332222222223222233333333333334 PP

>> Chitin_bind_1  Chitin recognition protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  13.2    0.0059       7.5       7      34 ..      26      53 ..      22      56 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0059
                   TT---STT-.EE-TTSBEEBSHHHHSTT- CS
  Chitin_bind_1  7 ggatCplnv.CCSqyGyCGttsdyCgagC 34
                     ++Cp+ + CCSq G CG + +yC   C
     CCD25806.2 26 ATKSCPEDLpCCSQGGECGKG-NYCLGDC 53
                   4689****99*********87.6995448 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  28.6    0.0042       5.3     234     327 ..     347     434 ..     302     447 .. 0.49

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0042
        SOG2 234 sdqipfnlsrsrrssssgnsaspaangaqsetsersasssg.vqssasstPlgegstsppgalsrqslsttgststltsssksrsssrsntnasa 327
                 + +i+++ s+s++ssss+ s+s+++++++ ++s++s+sss+ ++ss+sstP +++++s++      s+++tg+ + ++  s+s+sss+s+t++++
  CCD25806.2 347 TTSISVS-SSSSSSSSSSSSSSSSSKTSSHSSSKSSTSSSRtTSSSSSSTPRSSSQSSAS------SVTSTGNRAATDIASQSNSSSSSATSSQN 434
                 2222222.2222222333333333333333444444555554555555555555555544......33333333333333333333333322211 PP

>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  12.6    0.0046       5.9      47     130 ..     361     446 ..     343     452 .. 0.31

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0046
        NPR3  47 skkkkkkskrkrssrskekkskesskksesssksesseekksskeseeseekesneeeeeeededdeesek.....eeeekedkkknlt 130
                 s+++   s+ ++s++s++++sk+s+++s ++s+s+ss+ ++ss++s++s +++ n+ +++  ++++++s++     ++++  + ++ lt
  CCD25806.2 361 SSSS---SSSSSSKTSSHSSSKSSTSSSRTTSSSSSSTPRSSSQSSASSVTSTGNRAATDIASQSNSSSSSatssqNNASVINVTNLLT 446
                 2111...1111112222222222222222222222222222222223333333333333333333222222222213334444444444 PP

>> SOBP  Sine oculis-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  15.9     0.008        10      80     179 ..     340     436 ..     305     449 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.008
        SOBP  80 rsaspaskrsesvspepsksaspsssptssnsskplisvassskllaeksqepaslveaplepkkqrkkkpglrkpkqvkagsskssetkagllqkqqk 178
                   + p  ++s svs + s+s+s+sss  ss+ssk   +++s+s++ +++  +++s+++++++++++ ++ +++ ++  + + s+++s++++ + ++q++
  CCD25806.2 340 TGNDPMLTTSISVSSSSSSSSSSSSS--SSSSSKTSSHSSSKSSTSSSRTTSSSSSSTPRSSSQSSASSVTSTGNRAATDIASQSNSSSSSAT-SSQNN 435
                 56677777788877653333322222..34444444444444444444444444444555455555555555555544444443333333222.22333 PP

        SOBP 179 a 179
                 a
  CCD25806.2 436 A 436
                 3 PP

>> Hid1  High-temperature-induced dauer-formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  14.0    0.0091        12     600     682 ..     354     436 ..     310     445 .. 0.56

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.0091
        Hid1 600 eenssessrieesrsesrspslsevpelksslaitddeskaereksatessssqavsqlremsekarakesaesteesrqesa 682
                 +++ss+ss +++s+s+s++ s s+ ++ +ss+ +t++ s+++ + s+++s+ss + + +r  ++ a + +s +s++ s q++a
  CCD25806.2 354 SSSSSSSSSSSSSSSSSKTSSHSSSKSSTSSSRTTSSSSSSTPRSSSQSSASSVTSTGNRAATDIASQSNSSSSSATSSQNNA 436
                 22222222222223344444444444555555555555555555555555555444455555555555555555555555544 PP

>> DUF4614  Domain of unknown function (DUF4614)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  32.6     0.012        16      10      89 ..     353     433 ..     346     447 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.012
     DUF4614  10 sssssesessssssessssrslssssesslssksssstds.ksssqssestkkrsktktrttvketavqTsdpalayqwtk 89 
                 sssss+s+ssssss+sss+ s++sss+ss+ss++++s++s +++++ss+s+ ++  +  +++ +++a+q+++   + + ++
  CCD25806.2 353 SSSSSSSSSSSSSSSSSSKTSSHSSSKSSTSSSRTTSSSSsSTPRSSSQSSASSVTSTGNRAATDIASQSNSSSSSATSSQ 433
                 333333333333333333333333333333333322222202233334444444444666778899999887666655554 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  25.3      0.01        13     311     398 ..     351     437 ..     299     445 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.01
    Macoilin 311 lveesvkskssssssssnknskkasagsagssnssskkhsessksvtsssssknskkqklpaGkssa.alkdaaenslpnnqlskkdal 398
                  v +s++s+ssssssss+++sk++s +s++ss+sss++ s+ss+s++ sss+++       +G+ +a     + + s ++++ s+++a+
  CCD25806.2 351 SV-SSSSSSSSSSSSSSSSSSKTSSHSSSKSSTSSSRTTSSSSSSTPRSSSQSSASSVTS-TGNRAAtDIASQSNSSSSSATSSQNNAS 437
                 22.233333333444444556666666777788888888888888887776655444443.4554442444444444445555555554 PP

>> GCOM2  Putative GRINL1B complex locus protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  10.2      0.01        13      66     158 ..     332     426 ..     288     446 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.01
       GCOM2  66 v.ldsdkaqesdqlldlssgtlhekkvkvlkpsktlstqqdlaeieekgkeeaqesetkvn.kcpasseaaasspseaseqlaqtlvskqaedls 158
                 v l+s +    d++l +s ++  +++ + +++s++ s+ +  ++  +k++++++ +  + + + p ss+++++s+ ++    a t +++q++ +s
  CCD25806.2 332 VmLGSYNGTGNDPMLTTSISVSSSSSSSSSSSSSSSSSSKTSSHSSSKSSTSSSRTTSSSSsSTPRSSSQSSASSVTSTGNRAATDIASQSNSSS 426
                 35555566667888888888855555554444444444444444444444433222111111333333222222223333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1867  (0.104133); expected 358.6 (0.02)
Passed bias filter:                      707  (0.0394333); expected 358.6 (0.02)
Passed Vit filter:                       241  (0.0134419); expected 17.9 (0.001)
Passed Fwd filter:                        57  (0.00317921); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.02u 0.34s 00:00:01.36 Elapsed: 00:00:00.49
# Mc/sec: 2776.98
//
Query:       CCD25807.2  [L=115]
Description: hypothetical protein NDAI_0G00310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-11   44.5   0.2    4.9e-11   43.6   0.2    1.5  1  Cytochrom_C      Cytochrome c
    2.3e-07   31.0   1.2      2e-06   28.0   1.2    2.0  1  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
  ------ inclusion threshold ------
      0.012   15.3   0.2      0.039   13.7   0.1    1.8  2  Cytochrom_C550   Cytochrome c-550 domain


Domain annotation for each model (and alignments):
>> Cytochrom_C  Cytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.2   8.3e-15   4.9e-11       2      90 ..      16     112 ..      15     114 .. 0.78

  Alignments for each domain:
  == domain 1  score: 43.6 bits;  conditional E-value: 8.3e-15
                  --HHHHHHTTGGGTB-SSSBSSS....--HHHHHHHTTT-HHHHHHHHTTSS--SSSHHHHHHHGGGGGGG...........TT--HHHHHHHHHHHH CS
  Cytochrom_C   2 arGkelftanCaaCHgvegggakqgggptlsgaaerasaasigasvanpaavsaprddfekkkltaempark..........erlteqeiadlaaYLk 89 
                  ++G++lf++ C +CH+ve+gg ++  gp+l g+  r s++  g s+++ + ++  ++d ++        ++k             ++++++dl+ YLk
   CCD25807.2  16 KKGATLFKTRCLQCHTVEEGGPNKV-GPNLHGIFGRTSGQAPGYSYTDANIKKNVKWDENNMSEYLT-NPKKyipgtkmafgGLKKDKDRNDLITYLK 111
                  69*****99************9987.9**********999999999999777777554444443333.3333467777777566788**********9 PP

                  T CS
  Cytochrom_C  90 s 90 
                  +
   CCD25807.2 112 K 112
                  7 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   1.2   3.3e-10     2e-06       4      67 .]      16     110 ..      13     110 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.3e-10
  Cytochrome_CBB3   4 aaGaalykknCasCHg..kggag..........................pslagr.dwepdalvdiiknGkgaMp....afggqlsdeelwalv 64 
                      ++Ga l+k  C +CH+  +  +g                          ++++++ +w++  + ++++n k+  p    afgg  +d+++++l+
       CCD25807.2  16 KKGATLFKTRCLQCHTveE--GGpnkvgpnlhgifgrtsgqapgysytdANIKKNvKWDENNMSEYLTNPKKYIPgtkmAFGGLKKDKDRNDLI 107
                      78**************663..33335556666666666666666666554444444677688888888888766666669************** PP

  Cytochrome_CBB3  65 aYl 67 
                      +Yl
       CCD25807.2 108 TYL 110
                      **7 PP

>> Cytochrom_C550  Cytochrome c-550 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   6.5e-06     0.039      17      46 ..       6      35 ..       2      45 .. 0.81
   2 ?   -0.8   0.0      0.19   1.1e+03      71      82 ..      75      86 ..      63     113 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.5e-06
                    -EEEEEHHHHHHHHHHHHHHTHHHHGGGSB CS
  Cytochrom_C550 17 etvtlseeqlkkgkklFeaeCaqCHvgGkt 46
                    e++ +++   kkg  lF++ C qCH+  + 
      CCD25807.2  6 ESTGFTPGSEKKGATLFKTRCLQCHTVEEG 35
                    6678999999***************86544 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.19
                    HHHHHHHS-B-T CS
  Cytochrom_C550 71 alvdylknPtsy 82
                    ++ +yl nP+ y
      CCD25807.2 75 NMSEYLTNPKKY 86
                    466788888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.27s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 852.88
//
Query:       CCD25808.2  [L=253]
Description: hypothetical protein NDAI_0G00320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       533  (0.0297284); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1933.76
//
Query:       CCD25809.2  [L=427]
Description: hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-29  100.0   6.0    2.1e-15   56.3   1.1    2.5  2  UBA          UBA/TS-N domain
      6e-17   61.2   1.8    7.7e-17   60.8   0.8    1.7  2  ubiquitin    Ubiquitin family
    6.5e-10   38.6   1.1    6.5e-10   38.6   1.1    1.8  1  XPC-binding  XPC-binding domain
    2.3e-07   30.5   1.0    5.6e-07   29.3   1.0    1.7  1  Rad60-SLD    Ubiquitin-2 like Rad60 SUMO-like
      2e-05   24.6   0.1    5.9e-05   23.1   0.1    1.8  1  Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
    5.1e-05   23.6   0.7     0.0001   22.6   0.7    1.4  1  Ubiquitin_5  Ubiquitin-like domain
     0.0087   16.6   0.1      0.024   15.2   0.0    1.8  2  DUF2407      DUF2407 ubiquitin-like domain
  ------ inclusion threshold ------
       0.03   13.8   0.1      0.073   12.5   0.1    1.7  1  DUF2336      Uncharacterised protein conserved in bacteria (D
      0.039   13.7   0.6        3.9    7.3   0.0    4.1  4  CUE          CUE domain
      0.042   13.7   0.0         13    5.7   0.0    2.5  2  UBA_3        Fungal ubiquitin-associated domain
       0.07   13.2   0.1       0.19   11.8   0.1    1.7  1  UBA_2        Ubiquitin associated domain (UBA)
      0.075   13.6   0.1       0.64   10.6   0.0    2.1  2  MCM_N        MCM N-terminal domain


Domain annotation for each model (and alignments):
>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   1.1   1.4e-18   2.1e-15       3      37 .]     171     205 ..     169     205 .. 0.97
   2 !   45.9   0.3   2.4e-15   3.6e-12       1      37 []     385     421 ..     385     421 .. 0.98

  Alignments for each domain:
  == domain 1  score: 56.3 bits;  conditional E-value: 1.4e-18
                 HHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   3 eeaiqrLveMGFdreevveALratgnNeErAveyL 37 
                 +e+++r++eMG++reev++ALra++nN++rAveyL
  CCD25809.2 171 NETVERIMEMGYEREEVERALRAAFNNPDRAVEYL 205
                 89********************************9 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 2.4e-15
                 TCHHHHHHHHHTTS-HHHHHHHHHHTTTSHHHHHHHH CS
         UBA   1 edeeaiqrLveMGFdreevveALratgnNeErAveyL 37 
                 ede+ai+rL+e+GF+r+ v++ ++a+++NeE A++ L
  CCD25809.2 385 EDEQAISRLCELGFERSLVIQVYFACDKNEEIAANML 421
                 79*********************************98 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.8   5.1e-20   7.7e-17       4      71 ..       7      74 ..       2      75 .. 0.94
   2 ?   -3.6   0.0       6.5   9.8e+03      17      34 ..     170     187 ..     168     189 .. 0.76

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 5.1e-20
                EETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESS CS
   ubiquitin  4 ktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrl 71
                k ++++ki+l++e+s+t++++K ++a+ +  + +q+++iysGkvL+d +t+ee+++++g+++  ++++
  CCD25809.2  7 KDFKKEKIPLDLEPSNTILDVKSQLAQAKACEESQIKIIYSGKVLQDGQTVEECQLKEGDQIIFMISK 74
                55899************************************************************997 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.5
                 TTSBHHHHHHHHHHHHTS CS
   ubiquitin  17 esdtveelKekiaekegi 34 
                 +++tve ++e   e+e++
  CCD25809.2 170 RNETVERIMEMGYEREEV 187
                 689999999877777766 PP

>> XPC-binding  XPC-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   1.1   4.4e-13   6.5e-10      12      56 ..     297     341 ..     292     342 .. 0.94

  Alignments for each domain:
  == domain 1  score: 38.6 bits;  conditional E-value: 4.4e-13
  XPC-binding  12 qlRqlvqqnPqlLqplLqqlaqsnPqllqlIqqnqeeFlqlLnep 56 
                   lRq+v  +P+ L++lL++l+ + Pql ++I +n++ F+++L e 
   CCD25809.2 297 SLRQAVSGDPESLSSLLENLSTRYPQLREQIMSNPQTFISMLLEA 341
                  79****************************************985 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   1.0   3.8e-10   5.6e-07       2      68 ..       3      68 ..       2      72 .. 0.94

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 3.8e-10
                EEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEE CS
   Rad60-SLD  2 kiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdti 68
                ++i k+ +++++ +  +p++t+ +++++++++k   e +++++i+ G+ L++ +tve+ ++++gd+i
  CCD25809.2  3 NVIFKDFKKEKIPLDLEPSNTILDVKSQLAQAKACEE-SQIKIIYSGKVLQDGQTVEECQLKEGDQI 68
                7888999999***************************.***************************99 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1     4e-08   5.9e-05      25     103 ..      23      90 ..       7      98 .. 0.71

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4e-08
                  BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE---SS----.XXXXXX CS
  Rad60-SLD_2  25 tvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvvrenlsekksekkakka 103
                  t+ ++k ++ +        k+ +  ++k+i++Gk+L++ +t++e++l+ g+     +++ ++ ++++ +k +e  a++a
   CCD25809.2  23 TILDVKSQLAQ-------AKACEESQIKIIYSGKVLQDGQTVEECQLKEGDQ----IIFMISKKKSTVTKVTEPPAAAA 90 
                  55555555543.......35566789*************************9....66667776666666665554443 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.7   6.7e-08    0.0001      32      92 ..      12      72 ..       4      78 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 6.7e-08
  Ubiquitin_5 32 kkklletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskvmvLk 92
                 +k  l+ + + t  ++ s++a+    +e++iK+i++gk l+ ++t ee  +k+  +++ + 
   CCD25809.2 12 EKIPLDLEPSNTILDVKSQLAQAKACEESQIKIIYSGKVLQDGQTVEECQLKEGDQIIFMI 72
                 566666666667788999**********************************999987654 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.6e-05     0.024      25      72 ..      23      73 ..       4     107 .. 0.68
   2 ?   -2.8   0.0       6.4   9.6e+03      79      83 ..     217     221 ..     187     238 .. 0.58

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.6e-05
     DUF2407 25 tvagLkqliRerlpaelasrrLrLIyaGrlLedttslas.slklpees....v 72
                t+  +k +  +   + ++++++++Iy+G++L+d +++++ +lk+  +     +
  CCD25809.2 23 TILDVKSQLAQA--KACEESQIKIIYSGKVLQDGQTVEEcQLKEGDQIifmiS 73
                555555555444..489*******************98734555533333331 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 6.4
     DUF2407  79 skekg 83 
                 +++++
  CCD25809.2 217 HQQQQ 221
                 11111 PP

>> DUF2336  Uncharacterised protein conserved in bacteria (DUF2336)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   4.9e-05     0.073      69     161 ..     172     269 ..     169     343 .. 0.68

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.9e-05
     DUF2336  69 eslerlveragedealreaLlrRpdLpaavaerLlsrvsealrdrllarfald.aaaaeelvaeareratlslaea.deeea...krlvahlrrngrl 161
                 e++er++e+  e e++  aL +  + p +++e Ll   +e+l+++ +++ +++ +a +++++ e ++ at+   +a  ee +     + ++ + +g++
  CCD25809.2 172 ETVERIMEMGYEREEVERALRAAFNNPDRAVEYLLMGIPENLQQQHQQQQQQPtQASPQNIANEGSATATATGDDAhAEEPPaedDLFAQAAQGSGNA 269
                 799****************************************9988877665156678888888888888888886333335643333344444444 PP

>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0026       3.9      16      39 ..     183     206 ..     171     208 .. 0.94
   2 ?   -0.1   0.0      0.53   7.9e+02      29      41 ..     286     298 ..     286     299 .. 0.89
   3 ?   -1.1   0.0       1.1   1.6e+03      32      41 ..     387     396 ..     387     397 .. 0.90
   4 ?   -0.3   0.0       0.6     9e+02      15      40 ..     398     423 ..     397     424 .. 0.89

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0026
                 -HHHHHHHHHHCTTTHHHHHHHHH CS
         CUE  16 deevIravLrasngnvEatinaLL 39 
                 ++e ++++Lra  +n ++++++LL
  CCD25809.2 183 EREEVERALRAAFNNPDRAVEYLL 206
                 7899*******************9 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.53
                 TTHHHHHHHHHHC CS
         CUE  29 gnvEatinaLLeg 41 
                 g++ +ti  LL++
  CCD25809.2 286 GSIGLTIQDLLSL 298
                 899********87 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.1
                 HHHHHHHHHC CS
         CUE  32 EatinaLLeg 41 
                 E++i++L e+
  CCD25809.2 387 EQAISRLCEL 396
                 89*****997 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.6
                 S-HHHHHHHHHHCTTTHHHHHHHHHH CS
         CUE  15 ldeevIravLrasngnvEatinaLLe 40 
                 ++++++ +v+ a + n E + n+L++
  CCD25809.2 398 FERSLVIQVYFACDKNEEIAANMLFS 423
                 6889999*************999986 PP

>> UBA_3  Fungal ubiquitin-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0088        13      11      31 ..     172     192 ..     167     193 .. 0.90
   2 ?    5.2   0.0     0.012        18       9      29 ..     386     406 ..     379     408 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0088
                 HHHHHHHHHT--HHHHHHHHH CS
       UBA_3  11 dlVdefvsqGFekdkvievLk 31 
                 + V+    +G+e++ v  +L+
  CCD25809.2 172 ETVERIMEMGYEREEVERALR 192
                 899************999987 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.012
                 SHHHHHHHHHHT--HHHHHHH CS
       UBA_3   9 drdlVdefvsqGFekdkviev 29 
                 d+ ++  +   GFe+  vi+v
  CCD25809.2 386 DEQAISRLCELGFERSLVIQV 406
                 8899999************98 PP

>> UBA_2  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00013      0.19      12      30 ..     179     197 ..     176     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00013
       UBA_2  12 tMGYdkdeIieaLekaeks 30 
                  MGY+++e+  aL++a ++
  CCD25809.2 179 EMGYEREEVERALRAAFNN 197
                 6************998666 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.76   1.1e+03      58      86 ..     195     223 ..     185     258 .. 0.75
   2 ?   10.6   0.0   0.00043      0.64      43      80 ..     313     350 ..     297     390 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.76
       MCM_N  58 lenpkeylplleealkevvkklepsykdd 86 
                  +np + +++l +++ e +++ +++++++
  CCD25809.2 195 FNNPDRAVEYLLMGIPENLQQQHQQQQQQ 223
                 58999999999999988888777765555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00043
       MCM_N  43 lddLaafdeeLaeailenpkeylplleealkevvkkle 80 
                 l++L++  ++L e+i++np+ ++ +l ea+ + +++le
  CCD25809.2 313 LENLSTRYPQLREQIMSNPQTFISMLLEAVGDNLQSLE 350
                 78999999*********************988776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1439  (0.080261); expected 358.6 (0.02)
Passed bias filter:                      779  (0.0434492); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.66u 0.29s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 2940.06
//
Query:       CCD25810.2  [L=504]
Description: hypothetical protein NDAI_0G00340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-113  378.9   0.0   3.4e-113  377.4   0.0    1.7  2  Anp1       Anp1
  ------ inclusion threshold ------
      0.018   15.8   0.0      0.039   14.7   0.0    1.5  1  GldH_lipo  GldH lipoprotein


Domain annotation for each model (and alignments):
>> Anp1  Anp1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  377.4   0.0  3.8e-117  3.4e-113       2     263 ..      87     347 ..      86     348 .. 0.99
   2 ?   -2.5   0.1       0.3   2.7e+03     211     238 ..     379     406 ..     351     408 .. 0.58

  Alignments for each domain:
  == domain 1  score: 377.4 bits;  conditional E-value: 3.8e-117
        Anp1   2 vekydlnklestadaaenkekvLiltplrdaekflpeyfenllkltyphelidLaflvsdtsegdktlealeeelkklqkkkkk.krfrsitilekdfg 99 
                 ve ydl ++++++d++++++++L+++plrda+++lp++f++l+k++yph+ idL+flvsd+s  d+t+ +l ++l++ q++++k krf +i+i+ekdfg
  CCD25810.2  87 VEFYDLANYQGNKDGWQKNDRILFCVPLRDAAEHLPMFFDHLNKMSYPHNSIDLSFLVSDSS--DDTMGVLLSNLQNAQSQQDKsKRFGNIEIFEKDFG 183
                 789***********************************************************..******************99*************** PP

        Anp1 100 ekisqsesdrhkvevqklRRklmaraRNsLlssaLkpehswvlwlDaDivetpktliedlishdkdvivpnvlrklpdelekeqpYDlnsWveseeale 198
                 + i+qs+sdrh +++q++RRklmaraRN+L s a+kp+hswv+w+D+D+++ p+t++edl++hdkdvivpnv+r+lpd+l+++qpYDlnsW ese +l+
  CCD25810.2 184 QVIGQSFSDRHGFAAQGPRRKLMARARNWLGSVAIKPYHSWVYWRDVDVETIPRTIMEDLMHHDKDVIVPNVWRPLPDWLGNIQPYDLNSWKESEGGLQ 282
                 *************************************************************************************************** PP

        Anp1 199 lakkldeddvivegyaelatkrvhlaklrdengdpeeeveLDgVGgvsilvkaevfrqGamFpaf 263
                 la++l+eddvivegy e+at+r hla++rd+ng+pe+e+eLDg+Ggvsil+ka+vfr G +Fpaf
  CCD25810.2 283 LADTLGEDDVIVEGYPEYATWRSHLAYMRDPNGNPEDEMELDGIGGVSILAKAKVFRTGSHFPAF 347
                 ****************************************************************9 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.3
        Anp1 211 egyaelatkrvhlaklrdengdpeeeve 238
                   y+  +    h+a +++e++++ ee +
  CCD25810.2 379 HIYEPSKEDLKHMAWMAEEEKRKLEEEK 406
                 3333355667899999998877766655 PP

>> GldH_lipo  GldH lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0   4.4e-06     0.039      10      73 ..      98     160 ..      92     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.4e-06
   GldH_lipo  10 peegWekndtlsFtveisdttgkynlelelRhtedYpYsnlwliveltspdgkevkdtleleLa 73 
                 +++gW+knd + F v+  d++++  ++++  ++ +Yp +++ l   +++++++++   l  +L 
  CCD25810.2  98 NKDGWQKNDRILFCVPLRDAAEHLPMFFDHLNKMSYPHNSIDLSFLVSDSSDDTMG-VLLSNLQ 160
                 589****************************************9999988877764.3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      562  (0.0313459); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.24s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3740.86
//
Query:       CCD25811.2  [L=158]
Description: hypothetical protein NDAI_0G00350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.4e-31  106.5   0.6    7.6e-31  106.0   0.6    1.2  1  eIF-5a    Eukaryotic elongation factor 5A hypusine, DNA-bindi
  ------ inclusion threshold ------
      0.015   15.3   0.1      0.023   14.7   0.1    1.3  1  EFP_N     Elongation factor P (EF-P) KOW-like domain


Domain annotation for each model (and alignments):
>> eIF-5a  Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.6   8.5e-35   7.6e-31       1      69 []      85     152 ..      85     152 .. 0.99

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 8.5e-35
                 --EEEEEEEEEE-SS.EEEEEETT--EEE.EEGG..GB-HHHHTT--TT-E..EEEEEETTEEEEEEE- CS
      eIF-5a   1 nVkrkeyqLidIqdDgflsLmdddgetkeDlklpegelgkqikekfeegkdvlVtVlsamGeekiiavK 69 
                 +Vkr+eyqL+dI dDg+lsLm+ dgetk+D+k+pegelg+ ++++f+egkd++Vt++ amGee++i++K
  CCD25811.2  85 VVKRTEYQLLDI-DDGYLSLMTMDGETKDDVKMPEGELGETMRAAFDEGKDLMVTIIAAMGEEAAISFK 152
                 69**********.8*****************************************************98 PP

>> EFP_N  Elongation factor P (EF-P) KOW-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.1   2.5e-06     0.023       3      32 ..      25      54 ..      23      72 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.5e-06
                GG--TT-EEEETTEEEEEEEEEEEEETTS- CS
       EFP_N  3 selkkGlvieidgklyvVlefehvkpGkGq 32
                s l+k+ ++ i+g ++++++   +k Gk +
  CCD25811.2 25 SALRKNGFVVIKGRPCKIVDMSTSKTGKHG 54
                679************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.22s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 1377.45
//
Query:       CCD25812.2  [L=710]
Description: hypothetical protein NDAI_0G00360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-93  312.7   4.6    1.3e-60  205.4   0.0    2.6  2  DUF3589   Beta-mannosyltransferases
  ------ inclusion threshold ------
       0.57    9.7  16.1        1.2    8.7  16.1    1.4  1  SR-25     Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> DUF3589  Beta-mannosyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   3.6   3.2e-34   2.8e-30       1     191 [.     208     433 ..     208     444 .. 0.86
   2 !  205.4   0.0   1.5e-64   1.3e-60     247     490 ..     456     695 ..     447     695 .. 0.91

  Alignments for each domain:
  == domain 1  score: 105.4 bits;  conditional E-value: 3.2e-34
     DUF3589   1 kCeelksekslevsk.aknlkadlekilkkllkelenseylkelkkffkeelkeqlkektiekhwyrlagssvwLeqygvhlmvsRvlyskkgkknkpv 98 
                 kCe+l+ ++ +e s+ +k l+ dl ++ ++l k+  ++ + kel++  +++ +e   ek+i++hw+r+ gssvwLe  ++h+m sR++y+++g +++p 
  CCD25812.2 208 KCEDLQYTNIIEHSRwNKILEDDLMELRRDLRKN--DKFLGKELSSDNEKDWSE---EKIINEHWMRFGGSSVWLEREQCHVMFSRIVYTRNGVRDHPH 301
                 7***********9984567899999999999998..888889999988777777...99**************************************** PP

     DUF3589  99 vSllYaqvfdenWkelenveL....vvpteekeekek.......................................kkkfkklkfPsflpipfyhnlkk 154
                 vS++ aq fd++W+el   ++    ++p ++     +                                       kk+ +++   +f+  p+  ++k+
  CCD25812.2 302 VSMIRAQAFDKDWNELIGKRIpyndLIPHKDI----EleiqkldeelgmhscdhlkkdktlyetcvvdntrremeaKKRKEEILSQYFITYPTVLDIKY 396
                 ****************8765422224555555....144558999*****************************9867778888889999999999997 PP

     DUF3589 155 tk.kryyGpEDpRillvknekgyeEPlivfNskhrkik 191
                 ++ + + GpEDp ++l+k  +++eEPl++fN+++ + +
  CCD25812.2 397 NTnGDWKGPEDPHVILRKT-DNMEEPLVIFNMEDDEEE 433
                 7659************986.579*********987655 PP

  == domain 2  score: 205.4 bits;  conditional E-value: 1.5e-64
     DUF3589 247 kenekrakieKNWtpfiseeerkkkgydkkiyfvyrwenLevLkCeleeaesseCefeyklek...kkkekvgplrGGteLininelleeslkkklpkn 342
                  +++k +++eKNW+pf++++++++      iyf+y++++Le+LkC+l+    + Ce+++++++   ++++k+g +rGGt+++++ ell+        k+
  CCD25812.2 456 DASRKFKEKEKNWAPFFHQTSSESAFSRGIIYFIYSFSPLEILKCSLN---DGICEMVFEAKTldlSDDNKFGGMRGGTQFVPLPELLP------HVKG 545
                 5677899*****************99999******************9...689*******999999********************99......3699 PP

     DUF3589 343 reiwiGfaRahlkkCGCgksmYRPnlvvlvkdkekykishvssfisldievlgwkkkeklCegknvliPngissweiekdk.ekvkaeDyltltlsvaD 440
                 ++iw+Gf++ h+++CGCg+++YRP l +lv+++  y+ +     i++d++vl+w++k ++C ++nvl Pn+i swe+++++ + +++eDy+tlt+s aD
  CCD25812.2 546 KQIWVGFPKLHIEHCGCGERFYRPMLSLLVESNGVYHQELAVPDIDFDMDVLSWDQKGTHCGQHNVLSPNSIDSWEVASQTsHPKRFEDYMTLTFSEAD 644
                 ***************************************999***********************************9987466899************ PP

     DUF3589 441 etveivhikgllkailksleeeee.esekeeekkkkknndnikCalkaske 490
                 ++ +++ ++g+l++il++ +e+++ e+ + ++k++    +++kC++k+ske
  CCD25812.2 645 ANTRVIILRGILNYILNMYKEKDMmENFEVSKKSSIIIGQTLKCVVKQSKE 695
                 ****************8555444403444555666678899*******986 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  16.1   0.00014       1.2      61      92 ..      22      53 ..      12      58 .. 0.50

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00014
       SR-25 61 rrssssssssssssssssssssssssddrkkr 92
                ++ss   ++sssssssssssssssss++ kk+
  CCD25812.2 22 KTSSPFLNNSSSSSSSSSSSSSSSSSSNLKKK 53
                32333334445555554554545555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1057  (0.0589548); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.27s 00:00:00.95 Elapsed: 00:00:00.40
# Mc/sec: 5373.30
//
Query:       CCD25813.2  [L=981]
Description: hypothetical protein NDAI_0G00370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-97  324.4   0.1    4.3e-97  323.6   0.1    1.4  1  MCM              MCM P-loop domain
    1.1e-31  109.2   0.0    2.1e-31  108.4   0.0    1.4  1  MCM_OB           MCM OB domain
      4e-23   81.6   1.0      4e-23   81.6   1.0    2.1  2  MCM_lid          MCM AAA-lid domain
    1.8e-07   30.8   0.0    1.8e-06   27.5   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
    2.4e-07   31.3   2.3      9e-07   29.4   0.7    2.8  2  MCM_N            MCM N-terminal domain
     0.0033   17.3   0.0     0.0064   16.4   0.0    1.5  1  AAA_3            ATPase family associated with various cellul
  ------ inclusion threshold ------
      0.019   14.7   0.0      0.044   13.5   0.0    1.5  1  Sigma54_activat  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.6   0.1  1.7e-100   4.3e-97       2     224 .]     352     574 ..     351     574 .. 0.99

  Alignments for each domain:
  == domain 1  score: 323.6 bits;  conditional E-value: 1.7e-100
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSE CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaa 100
                 +++i++l+k+kdi++ l++s+apsiygh+++k+aill+l+ggv+k+l+++++lrgdin+l+vgdp+taKsqlL++v ++a+ a+ t+g+gss++gLtaa
  CCD25813.2 352 IRNINKLSKRKDIFDLLAQSLAPSIYGHDHIKRAILLMLMGGVEKNLPNGSHLRGDINILMVGDPSTAKSQLLRFVLNTASLAIATTGRGSSGVGLTAA 450
                 789************************************************************************************************ PP

                 EEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSS CS
         MCM 101 vvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFD 199
                 v+ d+etge  leaGa+vlad+Gv+ciDefdkm++ dr+a+hE+mEqqt++iaKaGi++tLnar+sv+aAanp++g+yd ++  ++ni l+++lLsrFD
  CCD25813.2 451 VTTDKETGERRLEAGAMVLADRGVVCIDEFDKMTDVDRVAIHEVMEQQTVTIAKAGIHTTLNARCSVIAAANPVFGQYDVNRDPHHNIALPDSLLSRFD 549
                 *************************************************************************************************** PP

                 EEEEE-SSTTHHHHHHHHHHHHHHH CS
         MCM 200 lifvllDkvdeekDeelaehivslh 224
                 l+fv+ D+++e +D++++eh++++h
  CCD25813.2 550 LLFVVTDDINEIRDRSISEHVLRTH 574
                 *********************9987 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.0   8.3e-35   2.1e-31       3     124 ..     172     303 ..     168     305 .. 0.84

  Alignments for each domain:
  == domain 1  score: 108.4 bits;  conditional E-value: 8.3e-35
                 GG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEES---...........-SB-..TTT-HHH-EEE-GG..GSEEEEEEEEEEE----- CS
      MCM_OB   3 RdlrsehigklvkveGivtrasevkpklkkavfeckkcgktvevelee...........PrkCeekeCeskdpfklete..kskfvdfqklklQEspee 88 
                 R+l+++ ++kl++veGivtr+s v+pkl ++v++ +++g+ +  ++++           P   ++   e  d +kl+te   s+fvd+q++++QE+pe 
  CCD25813.2 172 RTLNAQFLNKLISVEGIVTRTSLVRPKLIRSVHYAEQTGRFHYRDYTDatttlttriptPAVYPT---EDPDGNKLTTEygYSTFVDHQRITVQEMPEM 267
                 9**************************************85555455566677888855443322...2344555555555****************** PP

                 --------EEEEEEEGGGTT---TT-EEEEEEEEEE CS
      MCM_OB  89 vpaGelPrslevileddlvdkvkPGdrvevtGiyra 124
                 +paG+lPrs++vil+ddlvdk kPGdr++++G++++
  CCD25813.2 268 APAGQLPRSIDVILDDDLVDKTKPGDRINIIGVFKS 303
                 *********************************987 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   1.0   1.6e-26     4e-23       2      84 ..     654     733 ..     653     736 .. 0.94
   2 ?   -1.8   0.3       1.6   4.2e+03      34      70 ..     788     815 ..     758     823 .. 0.58

  Alignments for each domain:
  == domain 1  score: 81.6 bits;  conditional E-value: 1.6e-26
                 HHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHHTSSTSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHH CS
     MCM_lid   2 llrkYiayarekikPklseeakeklseaYvelRkeeedskrksipitvRqLesliRLseAlAklrlsevvteedveeairllk 84 
                 ++rkYi+ya+e++ P+l+++a +++++ Y++lR++e+    k+ pit+R+Le+liRL++A+Ak+rls++v+++d++ a+ ll+
  CCD25813.2 654 FVRKYIQYAKERVVPQLTQKAIDIIVKNYADLRNDEN---IKKSPITARTLETLIRLATAHAKVRLSKTVDKRDAMIAAGLLR 733
                 689*******************************884...6799**********************************99886 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.6
                 HHHHTSSTSSSST--HHHHHHHHHHHHHHHHHHTSSS CS
     MCM_lid  34 RkeeedskrksipitvRqLesliRLseAlAklrlsev 70 
                 R         +++ t+    s ++ s A+ kl+ls++
  CCD25813.2 788 R---------ATRLTTASAASSVKASPARRKLQLSDE 815
                 3.........344555555666666666666666655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.18   4.6e+02      21      40 ..     406     425 ..     403     432 .. 0.86
   2 !   27.5   0.0   7.2e-10   1.8e-06      93     160 ..     458     525 ..     452     550 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.18
  Mg_chelatase  21 GgHnlllvGppGsGKtmlak 40 
                   G  n+l+vG p + K+ l +
    CCD25813.2 406 GDINILMVGDPSTAKSQLLR 425
                   7889***********98865 PP

  == domain 2  score: 27.5 bits;  conditional E-value: 7.2e-10
  Mg_chelatase  93 ggskpkpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcp 160
                   g ++ + G++ la +Gv+ +DE+ +++     ++ e +e+++vti++a  +++  ar+ ++aa+Np  
    CCD25813.2 458 GERRLEAGAMVLADRGVVCIDEFDKMTDVDRVAIHEVMEQQTVTIAKAGIHTTLNARCSVIAAANPVF 525
                   5668899********************99999**********************************74 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.7   3.5e-10     9e-07       2     103 ..      33     161 ..      32     162 .. 0.78
   2 ?   -3.6   0.0       6.7   1.7e+04      63      86 ..     665     689 ..     658     703 .. 0.58

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 3.5e-10
       MCM_N   2 ekFedFLeefk.............................ddsededgekkYrdqlqemaerekttLevdlddLaafdeeLaeailenpkeylplleea 71 
                 ++F++FL++f+                             d+++d d+ kk  +  ++++    ++++++lddL++fd+ ++  il++p  ++p  e+a
  CCD25813.2  33 RRFQEFLDTFSdykesirniqlynsakdqidpnddvdnflDEDDDIDKAKKASSSSKSNILP--QRVTISLDDLREFDRSFWTGILTEPAYFIPPAEKA 129
                 79*********999999999999999888877766666554444455555555555554444..6799******************************* PP

       MCM_N  72 lkevvkklepsykddakefpaeltrrfqvrfk 103
                 l++ + ++e+ +++++++  a  + + +++fk
  CCD25813.2 130 LTDAAHSMEELSTHNNSNATASSKSQWHLSFK 161
                 *******9995555446677777777777776 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 6.7
       MCM_N  63 eylp.lleealkevvkklepsykdd 86 
                 +++p l ++a++ +vk++++  +d+
  CCD25813.2 665 RVVPqLTQKAIDIIVKNYADLRNDE 689
                 4554134566666666666644444 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.5e-06    0.0064      41     113 ..     447     524 ..     409     550 .. 0.73

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.5e-06
       AAA_3  41 ilGtevfeekekefefkkGpvf.an..llladeinrappktqsalleameerqvtvege..thklpepflvlatqnPi 113
                 ++ +   ++++ e ++++G+++ a+  ++  de ++ +   + a+ e+me+++vt++++   ++l+    v+a+ nP+
  CCD25813.2 447 LTAAVTTDKETGERRLEAGAMVlADrgVVCIDEFDKMTDVDRVAIHEVMEQQTVTIAKAgiHTTLNARCSVIAAANPV 524
                 45556667788888999998652334499**************************9875226789************8 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   1.7e-05     0.044      79     142 ..     457     522 ..     454     530 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.7e-05
                      TTTSS-BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEE..ESBTSSSEEE--EEEEEEES CS
  Sigma54_activat  79 tGAekekkGlfekadgGtlfLDeigelplelQekLlrvlqegev..ervGsskeikvdvriiaatn 142
                      tG ++ ++G++  ad G++ +De  +++    + + +v+++++v   + G +++ ++ + +iaa+n
       CCD25813.2 457 TGERRLEAGAMVLADRGVVCIDEFDKMTDVDRVAIHEVMEQQTVtiAKAGIHTTLNARCSVIAAAN 522
                      67778889*******************************9997522699***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (981 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1145  (0.063863); expected 358.6 (0.02)
Passed bias filter:                      569  (0.0317363); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.84u 0.30s 00:00:01.13 Elapsed: 00:00:00.48
# Mc/sec: 6138.02
//
Query:       CCD25814.2  [L=1226]
Description: hypothetical protein NDAI_0G00380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.1e-19   67.8   0.2    2.2e-18   66.4   0.1    1.9  2  E1-E2_ATPase   E1-E2 ATPase
    1.8e-17   64.4   0.0    6.2e-10   39.7   0.0    2.5  2  Hydrolase      haloacid dehalogenase-like hydrolase
    1.3e-06   28.4   0.0    3.2e-06   27.1   0.0    1.7  1  Cation_ATPase  Cation transport ATPase (P-type)
    0.00084   19.2   0.9     0.0055   16.5   0.2    2.6  2  Hydrolase_3    haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.052   13.1   0.1        0.1   12.1   0.1    1.4  1  S6PP           Sucrose-6F-phosphate phosphohydrolase


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.7     6e+03      88     143 ..     164     218 ..     163     231 .. 0.66
   2 !   66.4   0.1   6.1e-22   2.2e-18       6     180 ..     255     466 ..     250     467 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.7
                   -TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSS CS
  E1-E2_ATPase  88 tgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgks 143
                   tg+++ l ++ rl  e  s + p+  +++ + ++ v+  +++ +++++++ll + +
    CCD25814.2 164 TGNSNNLTHMKRLYGEN-SFDIPIPSFMELFKEHAVAPLFVFQVFCVALWLLDEFW 218
                   67777777777777776.88888888888888887777777777777777554333 PP

  == domain 2  score: 66.4 bits;  conditional E-value: 6.1e-22
                   EEEEE-TTS-EEEEGGG--TTSEEEEET...T-B--SEEEEEEE-SEEE-TTTS---S-EE-.................G-TTEE-TT-EEEE.... CS
  E1-E2_ATPase   6 takvirdgteeeidakelvpGDivllka...gdrvpaDgrivegsaevdesaLTGEslpvek.................ekgdmvfsGtvvvs.... 78 
                     +v+r+g++ + +++el p D+v +     ++ +p+D ++++gs+ v+e++L GEs+p  k                 +k + +++Gt  ++    
    CCD25814.2 255 PINVFRNGKWSTLQTNELLPMDVVSVTRtaeESAIPCDLILIDGSCIVNEAMLSGESTPLLKesiklrpneddlqlegvDKISVLHGGTKALQvtgp 351
                   5689********************9975444899*******************************************999***************** PP

                   .............-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TT CS
  E1-E2_ATPase  79 .............geakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPca 162
                                g a avVt+tg +t  g ++r++ +++++ +   k++  ++ +l +++++++ +v++    +g+   + +l  + ++++++P+ 
    CCD25814.2 352 esssdshiplpsdGGALAVVTKTGFETSQGSLVRVMIYSAERVSVDNKEALMFIFFLLIFAVIASWYVWIEGTKMGRIQSKLILDCILIITSVVPPE 448
                   ***************************************98888888888888888888888888888888888888888***************** PP

                   HHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 163 Lplavplalalgarrlak 180
                   Lp+ +++a+  ++++l+k
    CCD25814.2 449 LPMELTMAVNSSLAALSK 466
                   ********9888888776 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.7e-13   6.2e-10       1     156 [.     483     714 ..     483     735 .. 0.82
   2 !   22.1   0.0   4.2e-08   0.00015     170     209 ..     790     831 ..     768     832 .. 0.86

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 1.7e-13
                 SSEEEEESBTTTBCHHHHHHHHHHHH....................CHHHHHHHHHH...HHCHHHHHH.HHHHHHHHHHHHHHHHETTTE........ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx....................xxxxxxxxxxx...xxxxxxxxx.xxxxxxxxxxxxxxxxxxxxx........ RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa....................alalaaaletg...sehpigkal.vaaakarsgaltgfatfigrg........ 67 
                 i++++fDk+GTLt ge  v + ++ +                    +l ++aa +++        g  +  a  ka++++++ + +++  g        
  CCD25814.2 483 IDVCCFDKTGTLT-GEDLVFEGLAGLstntkdirhlysgsdapqntTLVIGAAHALVkldDGEVVGDPMeKATLKALGWKVDYNDVITKSGteklnilr 580
                 799**********.8877777777776655666666676666666666666666666666555555555555566667777666666666688999999 PP

                 ......................HHHHTHHHHHHHH..HCHHHHHHHHHHHHHHCHHHHHH.......................TTHHHHHHHHHHTHHB CS
                 ......................xxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxxxxxxx RF
   Hydrolase  68 ......................ayaigkpewltal..dippdlgaaigsaqsqgrtvall.......................qaralavftiadplkv 119
                                       a+ +g pe +++   ++p+++++   s  + g  v  l                         +  + + ++ p  +
  CCD25814.2 581 rfqfssslkrsssiashngslfAAVKGAPETIRERlsHVPENYDEIYKSFTRSGSRVLALatkslpkmspkkiddlvreniehGLEFSGFLVFHCP--L 677
                 999999999****************************************************************99999988876688899999988..* PP

                 HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 120 kpeaaeavasLkaagievvlltgdnpetaeraanqlG 156
                 k++a e+++ L++   + +++tgdnp ta ++a+++G
  CCD25814.2 678 KDDAIETIKMLNESAHRSIMITGDNPLTAVHVAKEVG 714
                 ************************************* PP

  == domain 2  score: 22.1 bits;  conditional E-value: 4.2e-08
                 S..STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHT CS
                 x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 170 t..vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaA 209
                 t   a +sp++k+ +++ L++ + +++m GDg nD+ al++A
  CCD25814.2 790 TwvYARVSPSQKEFILNNLKEMGYQTLMCGDGTNDVGALKQA 831
                 255899**************99999****************9 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   8.8e-10   3.2e-06      15      91 .]     541     619 ..     525     619 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 8.8e-10
  Cation_ATPase  15 devkllGnktEsALlvlaekl....gldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCthv 91 
                    d+ +++G++ E A l++   +       t++  e+ ++++ ++F+ss Kr s++ +  +++++ + vKGApe i +r +hv
     CCD25814.2 541 DDGEVVGDPMEKATLKALGWKvdynDVITKSGTEKLNILRRFQFSSSLKRSSSIAS--HNGSLFAAVKGAPETIRERLSHV 619
                    556799*******99988777576666677777889999*****************..56*****************9986 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.74   2.6e+03      88     130 ..     124     169 ..     108     187 .. 0.59
   2 !   16.5   0.2   1.5e-06    0.0055     193     234 ..     802     843 ..     671     850 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.74
                  HHHHHHTT.CEEEEEESSEEEESTT...THHHHHHHHHCHCTCEEE CS
  Hydrolase_3  88 ikllkenn.veillytedkvyvlnk..eksekkkkeeektkkkkee 130
                  ++++ +++  ++l+y++++v+ + k    +++k+k+ ++++ ++++
   CCD25814.2 124 LQTFFQFQkKRFLWYEDEQVFASPKfiVDEYPKIKDFKDSTGNSNN 169
                  4445555558899999999999988663333333333333333333 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.5e-06
                  HHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HH CS
  Hydrolase_3 193 kklakelnisleeviafGDgeNDieMLeaaglgvAmgnasee 234
                  ++++++l+    +++  GDg ND+  L++a +gvA+ n++ee
   CCD25814.2 802 EFILNNLKEMGYQTLMCGDGTNDVGALKQAHVGVALLNGTEE 843
                  5677888888889**************************998 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.9e-05       0.1     181     224 ..     812     855 ..     800     867 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.9e-05
                 GGGEEEEE-SGGGHHHHTSSSEEEE-TT--HHHHHHHHHH--TT CS
        S6PP 181 leqilvcGdsgnDeellignvlgVvVgnaqeellqwllenaken 224
                   q+l+cGd  nD   l++   gV + n  ee l+ l  + +e+
  CCD25814.2 812 GYQTLMCGDGTNDVGALKQAHVGVALLNGTEEGLKQLVVKNREE 855
                 569*************************9999666554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       654  (0.0364772); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.83u 0.27s 00:00:01.10 Elapsed: 00:00:00.44
# Mc/sec: 8291.06
//
Query:       CCD25815.2  [L=320]
Description: hypothetical protein NDAI_0G00390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.1e-07   30.1   0.0      4e-07   29.7   0.0    1.2  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
    1.1e-05   24.9   0.0    2.6e-05   23.7   0.0    1.5  1  PfkB          pfkB family carbohydrate kinase


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   4.4e-11     4e-07      62     205 ..      77     229 ..      41     263 .. 0.70

  Alignments for each domain:
  == domain 1  score: 29.7 bits;  conditional E-value: 4.4e-11
                   SEEEE-S--SHHHHHHH...HHHHHHTTS..SEEEE---SSCTSSSBSSHHHHHHHHHHTG...GG-SEEE-BHHHHHHHHT---SSHHHHHHHHHH CS
  Phos_pyr_kin  62 davKiGmlasaeiievv...aeklkkykv..pvVlDPVmvaksgselleeeavealkeeLl...platvitPNlpEaeaLlgekikteedmkeaakk 150
                   +a+  G l +++ ++++   ++k+kk++      +DPVm  ++++  ++e+++  +++ +l     +++itPN +E+e L g+ki +++++k a ++
    CCD25815.2  77 NALLSGYLPNKDSVKCMginYKKFKKQNPnsIWLMDPVMG-DEDELYVNEDVIPEYRNLILsdsSDVDIITPNQFELEILYGKKIIDQNELKLALNH 172
                   56667888888888877444566655555224578***96.556677899999****99885545789***************************** PP

                   HHHTT-SEEEEEEG.GS-SSSEEEEEEEE...TSSEEEEEEEE----S--BTHHHHHHH CS
  Phos_pyr_kin 151 llklgakaVlikGg.hlegeeavvtdvly...dgeeveeleaerietknthGtGCtlss 205
                   l+k     ++  +  ++ ++e++ ++++     + +   ++ + i+ +   G G+ +++
    CCD25815.2 173 LHKRIPVIIVTSCDpRIFHDEDY-VYCVAsmrGHAHPLVYRVPLID-SYFTGVGDLFAA 229
                   ***85555544444333334443.3333332122223345555566.666677777666 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.9e-09   2.6e-05     182     271 ..     140     237 ..     123     250 .. 0.72

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.9e-09
                 CTESEEEEEHHHHHHHHTSCTHSHHHHHHHHHHHHHTTSSEEEEE.......EGGGEEEEEETTEEEEEEE.SSSS-SBG..TTHHHHHHHHHHHHHHT CS
        PfkB 182 aladllkpneeElealtgekledieealaalhklkakgaktvvvt.......lGkeGalvvekdgelkvpavpkvkvvDt..tGAGDsfvggflaalle 271
                 + +d+++pn+ Ele+l g+k+ d++e++ al++l+ k++ +++vt       + ++ +++v +   + +p v+ v  +D+  tG GD f++ +l  + +
  CCD25815.2 140 SDVDIITPNQFELEILYGKKIIDQNELKLALNHLH-KRIPVIIVTscdprifHDEDYVYCVASMRGHAHPLVYRVPLIDSyfTGVGDLFAAILLDRIYS 237
                 679******************88888888888855.578899999333333334555555545555555666889999965589999999988766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2322.81
//
Query:       CCD25816.2  [L=1829]
Description: hypothetical protein NDAI_0G00400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      7e-38  130.6   0.1    2.4e-37  128.9   0.1    1.9  1  RVT_2            Reverse transcriptase (RNA-dependent DNA pol
      4e-13   49.6   0.0    8.5e-13   48.5   0.0    1.6  1  rve              Integrase core domain
    1.1e-05   25.1   0.0    4.6e-05   23.2   0.0    2.1  1  gag_pre-integrs  GAG-pre-integrase domain
  ------ inclusion threshold ------
        3.6    7.8   7.7         31    4.8   0.9    3.3  2  DUF739           Protein of unknown function (DUF739)


Domain annotation for each model (and alignments):
>> RVT_2  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.1   5.2e-41   2.4e-37      14     240 ..    1338    1560 ..    1330    1562 .. 0.91

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 5.2e-41
       RVT_2   14 aigsrWvftkkkddlkevkykarlvaqGfsqkagedydevfaPvirldsvrLllalaaeeelvvhqldvdsafLnaeldeevyvkqPpGfeidreee 110 
                   i+ + +f +k    +++ ykar+va+G  q  +e y ++ +  ++++s++L+l la e+el +  +d++ afL a+++e++y+++P       +  
  CCD25816.2 1338 VIPIQPIFDIK----RDGTYKARIVARGDLQS-DESYGDIDTSLLNMESLKLFLILALEKELTIRTMDINHAFLYADIEEKLYIQHPQ------DRS 1423
                  67777888888....59***********9985.799**************************************************94......478 PP

       RVT_2  111 kvykLnkslyGlkqapllWnekidkvLkklgferseaesGlyvrgtgegklivalyvddlliagsdikiledvkkelakkfklkdlgkvsk...... 201 
                  k+  L+ks+yGlkq+p  Wn+++ ++++k g+  +e   G+y+    +  +++a yvdd +ia+++ + ++++  +++k+f lk +g++++      
  CCD25816.2 1424 KITPLYKSIYGLKQSPKNWNDTLRTFMNKNGLYDTEYSPGFYTNE--DRSVMIAAYVDDTVIAAKSEEDIDKIIIMFQKEFTLKIVGTMKNnrlstd 1518
                  9*****************************************998..888*************************************9975333333 PP

       RVT_2  202 fLGieiaq..eaggiklsladyiakvvkkf.eltdaktvatP 240 
                   LG+++    ++g+ +lsl+ yi++++k+f e+++ ++ +tP
  CCD25816.2 1519 ILGLDLEYdlNTGQATLSLNGYIQRMMKEFpEIQTKRKFKTP 1560
                  799999875689*****************9678888888887 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   1.9e-16   8.5e-13       2     115 ..     639     755 ..     638     759 .. 0.93

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 1.9e-16
         rve   2 trpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggve...pervlsDngseytskafrefladlgirvsf 96 
                 ++pg+ w+ D++  v+    +  +y+lv++d  sr++++ +++++ d+ t+ + +e+ + r  ++    ++++++D+g+e+ ++ ++ +l+ lgi + +
  CCD25816.2 639 KEPGYSWSLDIFgPVATNVPNNPKYMLVMIDSVSRYLITSFHTTK-DKITIGNQIEKNINRIEKQFertVKELRMDRGTEFHNEYLQGILNGLGIVPIY 736
                 58***********9998999999**********************.99999999999987777766777****************************** PP

         rve  97 trpgrpqdnGkvErfhrtl 115
                 t  ++   n+++Er +rt+
  CCD25816.2 737 TSTQDHAGNARAERVIRTI 755
                 ******************8 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     1e-08   4.6e-05      25      67 .]     577     622 ..     559     622 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1e-08
  gag_pre-integrs  25 nlWHrRLGHpsfsrlkkLfkkgl...lpglkisksevCeaCqlgKq 67 
                      +  H+RL H s++++ + +kkg+   ++ +++s++ +Ce+C lgK+
       CCD25816.2 577 KEAHQRLSHASSQAIIESIKKGIfadVKDITNSENTECEICLLGKS 622
                      567********************4444444578899*********6 PP

>> DUF739  Protein of unknown function (DUF739)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   1.0    0.0072        32      31      50 ..    1111    1130 ..    1105    1143 .. 0.86
   2 ?    4.8   0.9    0.0069        31      31      50 ..    1161    1180 ..    1156    1193 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0072
      DUF739   31 rslslkLndkvsWkddeilk 50  
                   s s k+n+++ Wkd+   k
  CCD25816.2 1111 ESKSTKINKRIWWKDNKTTK 1130
                  5789************8776 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0069
      DUF739   31 rslslkLndkvsWkddeilk 50  
                   s s k+n+++ Wkd+   k
  CCD25816.2 1161 ESKSTKINKRIWWKDNKTTK 1180
                  5789************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1829 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2237  (0.12477); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.14u 0.29s 00:00:01.43 Elapsed: 00:00:00.50
# Mc/sec: 11102.74
//
Query:       CCD25817.2  [L=160]
Description: hypothetical protein NDAI_0G00410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-35  121.0  31.1    2.5e-22   79.0  12.4    2.4  3  ATP-synt_C  ATP synthase subunit C


Domain annotation for each model (and alignments):
>> ATP-synt_C  ATP synthase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3  10.1   5.3e-17   9.6e-13       1      59 [.      15      73 ..      15      74 .. 0.97
   2 ?   -0.8   0.0      0.11   2.1e+03      40      52 ..      73      85 ..      71      86 .. 0.84
   3 !   79.0  12.4   1.4e-26   2.5e-22       1      60 []      91     150 ..      91     150 .. 0.99

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 5.3e-17
                HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C  1 lgaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivali 59
                +g++ a++++ +g+++g++k g +++ + +++p+l +ks+i++++a++ia+ygL+v+++
  CCD25817.2 15 MGCAAAIVFTSFGAAYGTAKSGVGICASCVLRPDLLVKSIIPVVMAGIIAIYGLVVSVL 73
                58999****************************************************98 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.11
                HHHHHHHHHHHHH CS
  ATP-synt_C 40 liilafaeaialy 52
                l+  ++a ++aly
  CCD25817.2 73 LVSSSLAQSQALY 85
                7788999*****9 PP

  == domain 3  score: 79.0 bits;  conditional E-value: 1.4e-26
                 HHHHHHH.GGGHHHHHHHHHHHHHHHHHHHHSGHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  ATP-synt_C   1 lgaglavGlsalgsGigiGkagsagiravarnpklftksliilafaeaialygLivalil 60 
                 lgagl+vGls+l++G++iG++g+ag+r++a +p+lf+++++il+fae+++lygLival+l
  CCD25817.2  91 LGAGLSVGLSGLAAGFAIGIVGDAGVRGTAHQPRLFVGMVLILIFAEVLGLYGLIVALLL 150
                 7*********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       805  (0.0448993); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1218.32
//
Query:       CCD25818.2  [L=837]
Description: hypothetical protein NDAI_0G00420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-195  651.2  23.8   1.7e-195  650.9  23.8    1.0  1  Nucleopor_Nup85  Nup85 Nucleoporin
  ------ inclusion threshold ------
      0.019   15.2   0.8      0.019   15.2   0.8    2.6  2  Imm5             Immunity protein Imm5


Domain annotation for each model (and alignments):
>> Nucleopor_Nup85  Nup85 Nucleoporin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  650.9  23.8  1.9e-199  1.7e-195       2     568 .]     126     786 ..     125     786 .. 0.96

  Alignments for each domain:
  == domain 1  score: 650.9 bits;  conditional E-value: 1.9e-199
                      EBEE--.SS---SHHHHHHHHHHHHHHHHGGGGGS---------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH..............HHHHSS CS
  Nucleopor_Nup85   2 lypvrldstildspelrklvselfeifaslqkdressvptsglikksellehsreyrsalralleeleeaieslee.........kslkeklek 86 
                      lyp++l +++++s+e+  +vs+lfei+++l++dr +++pt glik+s+l++h+  +++a++++++ele++i++l++         +       +
       CCD25818.2 126 LYPIQL-PNVDNSKEFPVYVSKLFEIYNDLGDDRVFTIPTFGLIKSSSLKNHNVVVNMAMETMINELEIFINTLQKnyesekehqQ-------E 211
                      8*****.5******************************************************************999987654431.......1 PP

                      ..................HHHHHHHHHHHHHHHSSST......................T.HHHHHHHHHHHHHTTS--..SHHHHHTTCCSS- CS
  Nucleopor_Nup85  87 ..................leeleliwnlleilyfdkd......................s.rstllesLleWvnrsdgefppseelieevlesk 139
                                        le++++i+n+l++++f +d                      s r+++++sLl+W+nrsdg+  p+e++ie+v++++
       CCD25818.2 212 eqeqerqqyveigskffmLEDSLTILNCLKTFHFICDnnnietnddeqdfisndefdtdSiRNKFITSLLCWINRSDGQ--PDEAYIEQVFNNN 303
                      23356678899*********************************************98658******************..**********999 PP

                      .......CSSSSSGSHHHHHHHHHHHHTT-HHHHHHHHTTTTTTTHHHHS-HHHHHHHHHHHHHHTT--SS..........-HHHHHHHHHHHH CS
  Nucleopor_Nup85 140 .......eeeeveehpdfWklvnqlllrGlfdqavalLelsglleleefecevsnnlvedlielLkkmPvysveeglslsefekkwreWksevl 226
                             e++ v+ +  fWkl+nqlllrGlf+qa+ ++e+s+ le++e++c++s+++++dli+lL+++P++          + +k+reWk+ +l
       CCD25818.2 304 ttgvnehESKGVFGTIFFWKLLNQLLLRGLFQQAILCIERSNILEYLETQCSSSFQIMKDLISLLENYPTD----------SYTKFREWKAYTL 387
                      *******9*************************************************************99..........9************ PP

                      HHHHHHHTS---S-HHHHHHHHHHHHHHHT-HHHHHHT-SSHHHHHHHHHHHT---T..HH.HHHHHHHHHS.---TTSTTHHHHHHHHTS--G CS
  Nucleopor_Nup85 227 ellqngsfseqkisgelrdnledllkilsGneskileysetWyellvglllYyiPtl..kkleylqlsakkclpedetneleqlclailegdil 318
                      +ll+n+++se+kisgelrd++ed+l+i+sGne+kil+ys+tWye+l+g+llYyiP+l  ++ +ylqls++++ + d tn++e+ c++i++++i+
       CCD25818.2 388 QLLSNFNDSENKISGELRDSIEDTLLIISGNENKILYYSKTWYESLSGFLLYYIPSLklIQ-QYLQLSLERH-SLDLTNNWENSCVKIIQNNIH 479
                      *********************************************************9777.**********.********************* PP

                      GGHHHHHHH..HHHHHHHHHHHHHHTTSS.......-----.......S---SSSTT.....HHHHHHHHHHHT..-TTTHHHHHHHHHS-S.. CS
  Nucleopor_Nup85 319 svlkelesllddswfaahladLleakgll.......eeass.......eledlflre.....yllleyasells..hkslWqvaigylslcp.. 389
                      s+l++lesl  ds++aa++a+++eakgll       +   +       e edlf+r+     yl++++a+el+s  +k+lW++aig++slcp  
       CCD25818.2 480 SILPQLESL--DSCTAAFTAAICEAKGLLepfeyttN---DltdenanEIEDLFSRKngmasYLINNFALELCSsnDKQLWPIAIGLISLCPqq 568
                      *********..******************77665541...1445567789******************************************** PP

                      ......HHHHHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXHHHHHHHHHHHHHHHHHX CS
  Nucleopor_Nup85 390 ......segraaleelLprvpletnddiekllsiCaklkLpevaksickilgqrllkegrlgeAltwfskagdielvkriawqlfeasllegep 477
                            s ++ +++elL ++p+etnddie++lsiCa++kLp+vaks+++ilg+++l++g+++eA+t+fskag++elvk+++w+lfeas+l++ p
       CCD25818.2 569 nglnnySIKKLTISELLLHYPFETNDDIEWMLSICAQWKLPRVAKSLYTILGNQMLYQGSTIEAITNFSKAGKFELVKQYSWTLFEASILNNAP 662
                      ********************************************************************************************** PP

                      X....XXXXHHHH............................HHHHHHHHHHHHHHHXXXXXHHHHHHHHHHHHHHHHXXXXXXXHHHHHHHHHH CS
  Nucleopor_Nup85 478 lsedlddnlgsai............................llsqrLsflakyreFyklyeeeefkeAaelLisLlespilPkkfwllLladll 543
                      l    dd++++ai                            +++q+L+++a++++Fy++++++e+++A++lLisL+e+p+lPk++++lL++++l
       CCD25818.2 663 L----DDQILNAIatynttnsnsankivsipnyiiynlltsAMRQTLAPYAVLYQFYQARDNQEWAKALRLLISLIEFPYLPKCYLILLVMKFL 752
                      *....***************************************************************************************** PP

                      HHHXXXXX..........XXXXHHHHHHHHHHHH CS
  Nucleopor_Nup85 544 pllelkkd.........pllseeetlelleaLee 568
                      ++++l++d         ++++e  +l+++e+Le+
       CCD25818.2 753 YPIYLCDDddskvkgddVVFDEFLILNIIESLED 786
                      *******99****99999**************95 PP

>> Imm5  Immunity protein Imm5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.6   6.2         2   1.8e+04     128     146 ..      45      65 ..      12      71 .. 0.68
   2 ?   15.2   0.8   2.1e-06     0.019      23     154 ..     149     282 ..     132     297 .. 0.72

  Alignments for each domain:
  == domain 1  score: -5.6 bits;  conditional E-value: 2
        Imm5 128 l.eeddyldedd.fDpeswda 146
                   ee++++ded+ +D  s+++
  CCD25818.2  45 DkEEEEQNDEDEdIDDTSFEI 65 
                 234555555554466666665 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.1e-06
        Imm5  23 kllraigsprviqklaiecvkkvlplweevfaedqsplrlLekaedylye.ktdkeeiekeadklsndlen.dsgeeaeetvalaglaAlkvivtliys 119
                 ++++ +g++rv   + +  + k  +l ++++  +  + +++++ e ++   + ++e+ eke ++ ++  e  +++e  ++  +l     +  +++   +
  CCD25818.2 149 EIYNDLGDDRVF-TIPTFGLIKSSSLKNHNVVVNMAMETMINELEIFINTlQKNYES-EKEHQQEEQEQERqQYVEIGSKFFMLEDSLTILNCLKTF-H 244
                 677777776665.4888888999999999999999999******9999996555544.444454555555437777777777766555555555555.4 PP

        Imm5 120 ietdaesil...eeddyldeddfDpeswdadflaslay 154
                   +d+++i    +e d  ++d+fD +s+   f+ sl +
  CCD25818.2 245 FICDNNNIEtndDEQDFISNDEFDTDSIRNKFITSLLC 282
                 5566777774444444567899*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1772  (0.0988343); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.42
# Mc/sec: 5984.66
//
Query:       CCD25819.2  [L=222]
Description: hypothetical protein NDAI_0G00430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.8e-11   42.3   0.2      2e-10   41.0   0.2    1.7  1  UCR_TM    Ubiquinol cytochrome reductase transmembrane region
    1.3e-10   41.0   0.0    2.2e-10   40.3   0.0    1.4  1  Rieske    Rieske [2Fe-2S] domain


Domain annotation for each model (and alignments):
>> UCR_TM  Ubiquinol cytochrome reductase transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.2   2.2e-14     2e-10      10      66 .]      38      94 ..      30      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 2.2e-14
      UCR_TM 10 sdyrresvkDpskssretedeRkaftylvlaggavvgayaaKsvVqkfvssmsASAD 66
                s y+  +  D+ k+  ++ d+ ++ +y++++  ++++  +aKs+V++f+ssmsASAD
  CCD25819.2 38 STYKTPNFDDVLKEDHTNNDKSRSYAYFMVGSLGLLSSAGAKSTVETFISSMSASAD 94
                5566666667777677777778**********************************9 PP

>> Rieske  Rieske [2Fe-2S] domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   2.5e-14   2.2e-10      31      87 ..     154     209 ..     104     211 .. 0.75

  Alignments for each domain:
  == domain 1  score: 40.3 bits;  conditional E-value: 2.5e-14
                 -TTS-EEEEESC-TTTT-BCGGSEEETT.EEE-TTT--EEETTSBEEE-TTHHHEEE CS
      Rieske  31 dedgevyAlsdvCtHrgaplsegkidekgvleCpcHgwaydadGkvikgPaprplat 87 
                  ++ e+  + ++CtH+g+ + ++++d +    CpcHg+ yd +G+++kgPap +l++
  CCD25819.2 154 VQNPEWLIMLGICTHLGCVPIGESGDFG-GWFCPCHGSHYDISGRIRKGPAPLNLEI 209
                 34677779***********988777444.677*******************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       354  (0.0197445); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1655.35
//
Query:       CCD25820.2  [L=595]
Description: hypothetical protein NDAI_0G00440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
       0.11   12.9  12.5      0.075   13.4   4.7    2.9  2  Ly49          Ly49-like protein, N-terminal region
       0.36   11.2  10.0      0.053   13.9   5.1    2.2  2  DUF641        Plant protein of unknown function (DUF641)


Domain annotation for each model (and alignments):
>> Ly49  Ly49-like protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   4.7   8.3e-06     0.075      26      91 ..      40     107 ..      35     126 .. 0.86
   2 ?    3.0   0.9     0.014   1.3e+02      45      87 ..     504     546 ..     487     554 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.3e-06
                 XXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX..HHHHHHHHHHHHHHHHHH CS
        Ly49  26 vtkifqysqekhel.eetl.nlsqnysimqndinlkeelLrnkslecsilkdlleslkreqkrlyskt 91 
                  t+i+  +q+k e  ee l n ++  +  ++  +  + +Lrnk  e++ l+++l+++ r+++r+ +++
  CCD25820.2  40 YTRILELNQKKIEDmEEKLvNYEEDLKRYKDREHDLDSILRNKDEEIDDLRNKLKNIIRNKRRCIQRN 107
                 58899999999765377788**********999999****************************9874 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.014
                 XXXXXXXXXXXXXXXXXXXXXXXXXXX..HHHHHHHHHHHHHH CS
        Ly49  45 lsqnysimqndinlkeelLrnkslecsilkdlleslkreqkrl 87 
                  s   ++m++  +  e+l++n  le  + +++ ++l++ ++++
  CCD25820.2 504 DSADDKVMKQRKKAVEKLVKNVLLETLHFEEKFDTLNQIKDEI 546
                 33445689*******************9999999998877765 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   5.1   5.9e-06     0.053      55     124 ..      35     102 ..      31     106 .. 0.88
   2 ?   -2.8   0.2      0.82   7.3e+03      86     100 ..     510     524 ..     483     549 .. 0.55

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.9e-06
      DUF641  55 elkrlyrkkqkkkaseaeeseleaeiqeqrsllktyeitvkkleaelkakdseieeLkekLeeaeksnkk 124
                 +lkr y +  + ++  ++ + +e ++ +  + lk y+ + ++l++ l++kd+ei+ L++kL+++ +++++
  CCD25820.2  35 SLKRVYTRILELNQ--KKIEDMEEKLVNYEEDLKRYKDREHDLDSILRNKDEEIDDLRNKLKNIIRNKRR 102
                 58999999866664..699999999999***********************************9998876 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.82
      DUF641  86 llktyeitvkkleae 100
                 ++k  +++v+kl ++
  CCD25820.2 510 VMKQRKKAVEKLVKN 524
                 333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1876  (0.104635); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 4193.13
//
Query:       CCD25821.2  [L=682]
Description: hypothetical protein NDAI_0G00450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-77  261.2   0.0    2.5e-77  260.0   0.0    1.6  2  DUF2235   Uncharacterized alpha/beta hydrolase domain (DUF223


Domain annotation for each model (and alignments):
>> DUF2235  Uncharacterized alpha/beta hydrolase domain (DUF2235)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.0   0.0   1.4e-81   2.5e-77       1     287 [.      31     407 ..      31     408 .. 0.91
   2 ?   -3.6   0.0       0.3   5.5e+03      21      40 ..     460     479 ..     447     513 .. 0.53

  Alignments for each domain:
  == domain 1  score: 260.0 bits;  conditional E-value: 1.4e-81
     DUF2235   1 krlvlcfDGTgnkfdgdteesdsNvlklfralkrsdkdkkeqvvyYqpGiGtetyel.........lsslksaleklldgafgsgldehvveaYeflmr 90 
                 k+++lcfDGT ++f  +     +N+lk+f +l+++++    q++yYqpG+G +   l         +  + s++ ++ld++f+ +ld+h+v+aY flm+
  CCD25821.2  31 KNIILCFDGTRENFGPQ---PFTNILKIFGLLENDKD----QICYYQPGVGINGD-LdridenlnlRRFTWSKFYNILDSMFAFSLDSHIVSAYIFLMQ 121
                 89************887...68**********99984....9*********6653.347899999855556899************************* PP

     DUF2235  91 nyepgDeIylfGFSRGAytaRalagmlekvGllskgneeqvpfayklyekrekkkdkekeeeskekekkaekkekekasrsevkikflGvfDTVgslGi 189
                 nye gD+Iy+fGFSRGA++aR+lagm+ kvGll++g ee v  a+k+y+++e +++ ++++ +++    a++ ++   ++ ev+i f G+fD+V+s+Gi
  CCD25821.2 122 NYEIGDKIYMFGFSRGAFIARVLAGMIGKVGLLHPGLEELVTLAWKIYQSWEYSEQPNQSTYTTTL---ASEFKNIFCRDYEVRICFQGLFDSVNSVGI 217
                 ***************************************************986665555555544...467777777889****************** PP

     DUF2235 190 pesallekaakklpftdaklsssvkharhalaldErrakFkptlwekekekeekee........................................... 245
                 +     ++  + +pft++  s++v+h+rh +++dErr kFk++ +++++ ++++                                             
  CCD25821.2 218 L-----RD--RLFPFTQR--SNIVDHVRHCVSIDERRGKFKQQGFSSNS-YSTR-Lfslqfrtyileefsnnltpvesnasenistkeirnplidftig 305
                 *.....33..568***99..*************************8766.3333.258***************************************** PP

     DUF2235 246 ...........................................................eekeqdlkevwFpGvHsdvGGGyeeneek.eelsdipLaw 284
                                                                            +  + dl e wF G Hsd+GGG+e ++++ + +s ipL+w
  CCD25821.2 306 ktkstdtdcenpcqrfinrkclpietsrksvegifqicekldndrccfnsdgrdiqgdkNILTPDLIEKWFIGDHSDIGGGWEMDRNTeNFVSLIPLRW 404
                 *********************************************************998999*******************8777666889******* PP

     DUF2235 285 mvr 287
                 ++ 
  CCD25821.2 405 IIM 407
                 986 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.3
     DUF2235  21 sdsNvlklfralkrsdkdkk 40 
                 ++sN+  + + l++++++ +
  CCD25821.2 460 KESNIPLIRSYLDQQAQKPE 479
                 44555555555555444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.31s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4682.80
//
Query:       CCD25822.2  [L=1523]
Description: hypothetical protein NDAI_0G00460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-67  225.4   0.3    1.1e-66  224.1   0.1    1.9  2  Sec7      Sec7 domain
    4.4e-13   49.4   1.2    1.8e-12   47.5   1.2    2.1  1  Sec7_N    Guanine nucleotide exchange factor in Golgi transpo
    0.00026   20.7   0.6    0.00026   20.7   0.6    3.2  3  DCB       Dimerisation and cyclophilin-binding domain of Mon2
  ------ inclusion threshold ------
      0.054   13.8   0.5       0.38   11.0   0.0    2.7  2  DUF2683   Protein of unknown function (DUF2683)


Domain annotation for each model (and alignments):
>> Sec7  Sec7 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.1   0.1   2.4e-70   1.1e-66       1     183 []     601     825 ..     601     825 .. 0.86
   2 ?   -3.7   0.0       1.8   8.2e+03     115     135 ..    1132    1152 ..    1096    1153 .. 0.75

  Alignments for each domain:
  == domain 1  score: 224.1 bits;  conditional E-value: 2.4e-70
                 HHHHHHHHHHHHHH-HHHHHHHHHHCCCC.TSSHHHHHHHHHHT.CCS-HHHHHHHHCSGGHHHHHHHHHHHCTS--TT--HHHHHHHHCCCS-B-SSH CS
        Sec7   1 rkklleeaaekFnkkpkkgikyliekgll.eedpksiakflket.pgldkkklGeylgkekefnkevlkefvdlfdfsglrldeAlRlflssfrlpgEa 97 
                 rk+++ + ae+Fn++pk gi+ liekg++ +++ ++ia+fl+e+ ++++k+++G  l+++k  ++ +lk f+dlfdf+glr+deA+R++l++frlpgE+
  CCD25822.2 601 RKTEFIKSAELFNENPKLGIPSLIEKGFIkSNSDEDIAEFLFENnSRMNKRTIGLLLCNPK--RTPLLKCFIDLFDFKGLRVDEAIRILLTKFRLPGES 697
                 689999***********************556699******99889***************..************************************ PP

                 HHHHHHHHHHHHHHHHTT.............................C.............TCG-SHHHHHHHHHHHHHHHHHHC-TTSCCS--HHHHH CS
        Sec7  98 qkierilekFaekyfeqn.............................p.............evfenadavfvLaysiimLntdlhnpqvkkkmtledFi 154
                 q+ieri+e+F++ky++++                             +             +v +++d+vfvL+ysiimLntdlhnpqvk++m+++d+ 
  CCD25822.2 698 QQIERIIEAFSTKYVDNQdykpietgndleeeadlgssptdnaesrvEgdteeseqiedisTVQPDSDSVFVLSYSIIMLNTDLHNPQVKEHMSFNDYS 796
                 ***************7664555555555555555555444444444404444444444444668*********************************** PP

                 HCTTTTBTTB---HHHHHHHHHHHHHS-- CS
        Sec7 155 knnrgindgkdlpeefLeeiYdsIkeeei 183
                  n+rg++++kd+p+++L++iY sI+++ei
  CCD25822.2 797 GNLRGCCNEKDFPHWYLDKIYCSIRDKEI 825
                 ***************************98 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.8
                  TCTCG-SHHHHHHHHHHHHHH CS
        Sec7  115 npevfenadavfvLaysiimL 135 
                  +++ f++a++ f+L  s+ mL
  CCD25822.2 1132 ENDKFFEAETLFLLELSVAML 1152
                  234588999999999999998 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   1.2     4e-16   1.8e-12      24     158 .]     372     533 ..     357     533 .. 0.84

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 4e-16
      Sec7_N  24 kflslaersktfsLeLlesvlsnhgdvfrkhpellqllkqklcplLlknlsespsfpvferslrivllLlkkfrseLktEievflsllilill...... 116
                 +  ++++ ++ f+L+L++++++  gd f   p l  l+ + ++++++ +++++++ ++++ +l+++  L+  + ++L  +ie  l+ ++ +ll      
  CCD25822.2 372 NQAKHTNSTRIFALQLINTIIEIVGDKFPLYPPLFTLISDPIFKCIFYIIQNTNKLSLLQGALQLFTSLVLILGNHLPMQIELTLTRIFSMLLddttea 470
                 223799********************************************99*****************************************888888 PP

      Sec7_N 117 ..................esdssl......wqrvlaLeilrrl.csdpqllvelylnYDcdeeaknv 158
                                   +             ++l++e +  l  + p + ++++ n+Dc++e+++v
  CCD25822.2 471 nnptmtpnnasstsintaN----EyqpkspAIKELLIEQISILwTRSPSFFTSMFINFDCNLERSDV 533
                 8888887776665555441....0444444889999998888835789**************99876 PP

>> DCB  Dimerisation and cyclophilin-binding domain of Mon2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.6   5.9e-08   0.00026      58     172 ..      97     229 ..      69     234 .. 0.82
   2 ?    0.1   0.1      0.12   5.3e+02     101     137 ..     414     448 ..     374     458 .. 0.83
   3 ?   -2.9   0.0         1   4.6e+03      80     121 ..     866     909 ..     859     911 .. 0.71

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 5.9e-08
         DCB  58 eeilkPlllacetknp..kivqiaLgslqrLisheviseea......iskiietlwkllelgve......ielkvLqtllllvttss..vvhgdtlaka 140
                   +l+P+ll  +t +    i+++aL+slq++ + +vi+ ++       +++ ++l+++   g+e      + lkv+  l  l+ +     ++++t+ ++
  CCD25822.2  97 LTLLQPFLLTISTSSIsgYITSLALDSLQKFFTLNVINFDSlnyigaYREVANALTHCRFEGSEqlsddsVLLKVVLLLQDLINSPYgeLLTDSTMYDI 195
                 4789****99988865227*******************666566666999999999999888886666677888888888889887667899******* PP

         DCB 141 lvlCfrLhfskdn..vvqntAaAtlrQlvsvvFe 172
                 +++  +L ++k+   v  + A  t++ +   +F 
  CCD25822.2 196 VQTIMSLACNKRRteVLRKAAESTMTIITLKIFS 229
                 *******999987668889999999988888886 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.12
         DCB 101 ietlwkllelgveielkvLqtllllvttssvvhgdtl 137
                  + ++ ++++ ++ +l +Lq  l l+t+   + g++l
  CCD25822.2 414 FKCIFYIIQN-TN-KLSLLQGALQLFTSLVLILGNHL 448
                 5555566666.56.7*************999988877 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1
         DCB  80 LgslqrLisheviseeaiskiietlwkllelgve..ielkvLqt 121
                 L+sl  L+  ++i ++  + i++tl+k+++++++  i  ++L t
  CCD25822.2 866 LSSLELLLFDRAIFKHVGNAIVSTLFKIYKVASDdhISSRMLTT 909
                 44555555566666777899999999999998876666666655 PP

>> DUF2683  Protein of unknown function (DUF2683)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.8   8.2e+03      39      54 ..     592     607 ..     578     611 .. 0.52
   2 ?   11.0   0.0   8.5e-05      0.38      15      50 ..     683     719 ..     667     727 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.8
     DUF2683  39 yaeyllEaElkPefve 54 
                  +e l+  E k ef++
  CCD25822.2 592 INEILKQRERKTEFIK 607
                 2334444455555554 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 8.5e-05
     DUF2683  15 iieivKakydlkdksaAidllieqyaeyllEa.ElkP 50 
                  i i+ +k+ l+ +s+ i+ +ie +     ++ ++kP
  CCD25822.2 683 AIRILLTKFRLPGESQQIERIIEAFSTKYVDNqDYKP 719
                 588999*******************875555559999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       811  (0.045234); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.90u 0.26s 00:00:01.16 Elapsed: 00:00:00.45
# Mc/sec: 10101.62
//
Query:       CCD25823.2  [L=266]
Description: hypothetical protein NDAI_0G00470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-75  251.3   0.0    9.3e-75  251.1   0.0    1.0  1  OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS famil


Domain annotation for each model (and alignments):
>> OMPdecase  Orotidine 5'-phosphate decarboxylase / HUMPS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.1   0.0   5.2e-79   9.3e-75       1     225 []      30     251 ..      30     251 .. 0.97

  Alignments for each domain:
  == domain 1  score: 251.1 bits;  conditional E-value: 5.2e-79
                 SEEEEEE-SSSHHHHHHHHHHHGGGSSEEEEEHHHHHHHTHH.HHTHHHHHHHHHTSEEEEEEEE-S-HHHHHHHHHSTCHHHHTTESEEEEEGTGHHH CS
   OMPdecase   1 snLclalDvatarelleladkvgpsivvlKthydlvegwgfegtgaklaalarkhgflifeDrKfaDIGntvekqatagsarikewadivtvhavaGka 99 
                 +nLc +lDv+t++ell+l+d +gp+i+ lKth+d+++++++egt+  l + a k +flifeDrKfaDIGntv++q+++g+++i+ewadi+++h+  G +
  CCD25823.2  30 TNLCASLDVRTTEELLRLVDILGPYICLLKTHVDILSDFSMEGTVIPLKQMALKYNFLIFEDRKFADIGNTVKLQYASGVYKIAEWADITNAHGITGPG 128
                 69************************************************************************************************* PP

                 HHHHHHHHHHHTT..S.EEEEEESTSSGGHHHHHHHSHHHHHHHHHHHHHHHTTESEEECCCHTH.HHHHHTTCSCEEEHHHTTEEEEECTTCCGGGHH CS
   OMPdecase 100 svkalaeaaekwg..nrgllilaqmsskgnlmlqekgytqacveaarehkaedfvmGfvaqetln.ateedaddfihltpgigleqggdgkgqqyntpe 195
                 +v++l+eaa + +   rgll+la++sskg+l+ +e  yt  +ve a+ +k  +fv+Gf+aq+++  +te    d++++tpg+gl+++gd++gqqy+t+e
  CCD25823.2 129 IVAGLKEAAMEVSnePRGLLMLAELSSKGSLAHGE--YTRGTVEIAQTDK--EFVFGFIAQRDMGgRTEG--FDWLIMTPGVGLDDKGDALGQQYRTVE 221
                 *********9988778*******************..*************..9************55444..5************************** PP

                 HHHHHTTCSEEEESHHHHTSS.SHHHHHHHH CS
   OMPdecase 196 kligiagadiiivGRgIlkag.dpveeaery 225
                 ++++  g+diiivGRg++ +g dp+ e ery
  CCD25823.2 222 DVVS-TGSDIIIVGRGLFAKGrDPKVEGERY 251
                 ***9.78*************99*******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2002.86
//
Query:       CCD25824.2  [L=87]
Description: hypothetical protein NDAI_0G00480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-20   71.3   7.5    4.7e-20   71.0   7.5    1.2  1  zf-Tim10_DDP  Tim10/DDP family zinc finger
  ------ inclusion threshold ------
       0.02   15.1   0.1       0.22   11.8   0.0    2.0  2  Phasin_2      Phasin protein
      0.048   13.1   0.3      0.052   13.0   0.3    1.0  1  Tam41_Mmp37   Phosphatidate cytidylyltransferase, mitochondri


Domain annotation for each model (and alignments):
>> zf-Tim10_DDP  Tim10/DDP family zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   7.5   7.9e-24   4.7e-20       2      64 .]      14      76 ..       6      76 .. 0.97

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 7.9e-24
  zf-Tim10_DDP  2 qleqeqqvanaqelvnkltekCfkkCigkypgssLdsseesCldnCvdryldvsnlvskrlqe 64
                   l +++q+++++ l+++l+e+Cf +C++++++s+L+ +e++C+ +C +++l++s++v++r+qe
    CCD25824.2 14 KLVEQKQMKDFMRLYSNLVERCFSDCVNDFTSSKLTTKEQNCIMKCSEKFLKHSERVGQRFQE 76
                  5789*********************************************************97 PP

>> Phasin_2  Phasin protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.7e-05      0.22      44      79 ..       9      44 ..       2      52 .. 0.88
   2 ?    1.7   0.0     0.053   3.2e+02      14      31 ..      56      73 ..      44      81 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 3.7e-05
    Phasin_2 44 laaakallsakdpqellelqselaqpalekavayar 79
                ++ +++l++ k ++++++l s l+++++   v +++
  CCD25824.2  9 QQDFQKLVEQKQMKDFMRLYSNLVERCFSDCVNDFT 44
                56789***********************99998876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.053
    Phasin_2 14 lealaslalegaeklael 31
                ++++++++l+++e++ ++
  CCD25824.2 56 IMKCSEKFLKHSERVGQR 73
                566666666666666665 PP

>> Tam41_Mmp37  Phosphatidate cytidylyltransferase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.3   8.7e-06     0.052     183     245 ..       6      70 ..       2      82 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 8.7e-06
  Tam41_Mmp37 183 gEnknKvkniVe.kqleefrelYkplleelenvellekekekeeekkle.qdlspearaellrkL 245
                  + +++  +++Ve kq+++f +lY++l+e++ +  +++ +++k ++k+ +   + +e+  ++ +++
   CCD25824.2   6 AREQQDFQKLVEqKQMKDFMRLYSNLVERCFSDCVNDFTSSKLTTKEQNcIMKCSEKFLKHSERV 70 
                  556777889997689***************99999888876544322221222333444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1171  (0.0653132); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.27s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 660.08
//
Query:       CCD25825.2  [L=606]
Description: hypothetical protein NDAI_0G00490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.2e-23   81.8  14.6    4.2e-23   81.8  14.6    2.7  2  MFS_1     Major Facilitator Superfamily
    3.6e-09   36.0   0.4    3.6e-09   36.0   0.4    2.2  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8  14.6   4.7e-27   4.2e-23       2     353 .]      24     523 ..      23     523 .. 0.79
   2 ?   -0.2   0.2      0.04   3.6e+02      52      77 ..     529     554 ..     524     560 .. 0.83

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 4.7e-27
       MFS_1   2 llaaflsalarsilgpalplalaedlgispse......igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslw.lllvlrv 93 
                 +l+ f   +a+s l+p +  ++ +d++i+p+        g l +++a+ ++++++ +G +s+ +Gr+ +l lgl++++++ll+l f s  +   +++r 
  CCD25825.2  24 SLVRFSEPIAFSSLFPYVY-FMVKDFHITPDDadvakySGYLSSTFAFCQVLSAFHWGKFSESHGRKITLQLGLIGTSISLLILGF-SRNFtEAFIARS 120
                 577888999**********.************777776677***************************************777779.55555******* PP

       MFS_1  94 lqGlgagalfpagaaliadwfpk.eergraigllsagfslGailgpllgglla.sslg.....................Wravfyilaivsllafvlfl 169
                 l+Gl   + + ++ ++i +++++ +++++a++ + + f++G+++gpllgg+l+  +++                     + ++ ++l ++++l++v   
  CCD25825.2 121 LMGLL-NGNVGVIRTMIGEIATQrKHQALAFSTMPLLFQFGTVMGPLLGGFLVfRNANdndvvpswfplsikklidiypYCLPNLFLVGLLMLGLVNST 218
                 *****.588888999*****99999****************************66666******************96633334555555555555555 PP

       MFS_1 170 lll...........................peepperkrkspkeee..................................................... 188
                 l+l                            +++++++++ p+ e+                                                     
  CCD25825.2 219 LFLeethptykfrkdygietgdfikkrifgITPKVRPWNVVPENESdiehmpdiesqsatemtpliddddddsdvesvqslghvltrresvglirtysl 317
                 666666666666666666666666666666555555555555555599*********999999999999999999999999999988888888888866 PP

       MFS_1 189 ..........kgtgpaplvp..........awkallkdpvlwillialllfffgfsglltllplylqevlgls.....................gllla 246
                                                  +ll+  v++  + +++++++ +  +  +lp++l  +l  +                        ++
  CCD25825.2 318 heptdiplesL--------HlasdgcsensMRHHLLHTDVFY-PISVAFIMSLHLIVYNEFLPVFLAYDLAKDpqdptklaskfpwkitggigyQPEQT 407
                 55555444441........14555555566666777777776.99999999999999*******95555555577777777777788999999956*** PP

       MFS_1 247 glllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt.......ssavllll....vlvl..iGf.glgfvfpsllalasdlapp 331
                 g+ll+ ++++g+++ +++  ++dr  +   l+++  l+ l  l++++++               ++    ++v+  + + ++++ +p ++ l+ ++ p 
  CCD25825.2 408 GTLLSTTGIFGCFVVIFIFPIVDR--SFDCLTIFRTLVKLYPLIYFMIPYVvflqndnV---PQWCtivyLYVItgLKTlCGALSSPQIMLLIHNSSPL 501
                 ************************..555666666666666666666666666675552...44443234333355777788888************** PP

       MFS_1 332 eeagtasglfntagslggalgp 353
                 + ++ ++g++ +++s +++lgp
  CCD25825.2 502 HCRAIVNGATISIQSSARFLGP 523
                 *********************8 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.04
       MFS_1  52 lGrlsdrfGrrrvlllglllfalgll 77 
                 ++++++++   +v +++l lf++ +l
  CCD25825.2 529 IMSWAQKHNVAWVSWWSLSLFCIIAL 554
                 67899999999999999999999843 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.4   4.1e-13   3.6e-09      17     161 ..      33     175 ..      28     207 .. 0.87
   2 ?   -0.9   7.3     0.064   5.7e+02     280     431 ..     396     551 ..     390     563 .. 0.61

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 4.1e-13
                 HCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHH CS
    Sugar_tr  17 gvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGig 115
                 ++ + f +++  +k+f+ +  +++ ++   +sg + s f + ++++++  g++++  GRk +l  + + ++i+ ++ +++    ++   +++R l+G+ 
  CCD25825.2  33 AFSSLFPYVYFMVKDFHITPDDADVAK---YSGYLSSTFAFCQVLSAFHWGKFSESHGRKITLQLGLIGTSISLLILGFSR---NFTEAFIARSLMGLL 125
                 566666667777788888888887776...9**************************************************...*************** PP

                 HHHHHHHHHHHHHTTS....-SCCH.HHHHHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 116 vGlasvlvPmyisEiA....pkklR.galvslyqlaitfGilvaaifglgl 161
                  G + v+ +m i+EiA    +++l+ +++  l+q+++++G l++ ++ +  
  CCD25825.2 126 NGNVGVIRTM-IGEIAtqrkHQALAfSTMPLLFQFGTVMGPLLGGFLVFRN 175
                 9988777665.9****7766666667888899********99998887665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.064
                 HHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-S.HHHHHHHHHHHHHHHHHHH.....HHHHTTSS....CHHHHHHHHHHHHHHHTTTTHHHHH CS
    Sugar_tr 280 ifenlglsksllvtiivgvvnfvatfvaiflvdrfGR.RtllllGaagmaicfvilg...ivalllvaks.kaasivaivfialfialfalgwgpvpwv 373
                 i+  +g++++ ++  +++++ ++ +fv+if+   + R  ++l +  +   +  +i+    +v++l++++  ++ +iv +  i     l ++   p + +
  CCD25825.2 396 ITGGIGYQPE-QTGTLLSTTGIFGCFVVIFIFPIVDRsFDCLTIFRTLVKLYPLIYFmipYVVFLQNDNVpQWCTIVYLYVITGLKTLCGALSSPQIML 493
                 5556666666.4444445555555555544333333312233222222222222222334677777777789999998877776655555555666669 PP

                 HHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHH CS
    Sugar_tr 374 lvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfii 431
                 l+   +p+++R+++   +  ++  a fl  l++ +i++  ++  v +v    + lf+i
  CCD25825.2 494 LIHNSSPLHCRAIVNGATISIQSSARFLGPLIMGYIMSWAQKHNVAWVSWWSLSLFCI 551
                 99************99999999999999999999998877755554444433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      300  (0.0167327); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4401.79
//
Query:       CCD25826.2  [L=961]
Description: hypothetical protein NDAI_0G00500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.5e-165  550.4  41.7   4.5e-165  550.4  41.7    1.6  2  COG6      Conserved oligomeric complex COG6
  ------ inclusion threshold ------
       0.65    9.5   9.4       0.65    9.5   1.5    3.0  3  Tsc35     Testis-specific protein 35


Domain annotation for each model (and alignments):
>> COG6  Conserved oligomeric complex COG6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.5      0.13   1.1e+03     422     451 ..     114     142 ..      65     208 .. 0.61
   2 !  550.4  41.7    5e-169  4.5e-165      16     626 ..     225     958 ..     220     959 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.13
        COG6 422 esslaseaserekdfeevlsalldpllqac 451
                 +ssl++ +se+   f+++ s+++d + +++
  CCD25826.2 114 TSSLST-SSENGVAFDNINSQIIDDHYNNI 142
                 455554.44555555555555555554443 PP

  == domain 2  score: 550.4 bits;  conditional E-value: 5e-169
        COG6  16 aRrnLrsdiekellkineefleefqpvaeqLkriesdveklnelcdemkkklssakeet..sdlleeaeeLkeekkklelkqkllkaflkkFtLseeEe 112
                 aR++Lrsd+e+ellk++  +leef+p+++++kr++s+ve+++++++++ ++ ++++++   +++++++e+L+++ + l+lk++ll++++k+FtL++ E+
  CCD25826.2 225 ARKTLRSDLENELLKEHIIVLEEFKPIVRRIKRFSSSVENISKISEQLIDRANETSNHGttDSVFNQVEALQNQVNLLRLKHQLLTNIQKNFTLTQIED 323
                 7***************************************************9998864349************************************* PP

        COG6 113 aaLtsgeevddeFFkaLakvkeIhedCkiLLatenqraGleimeqmskyleaayekLyrwvqkelkslnsedn........................pe 187
                 +++ +g+ +d eFFk+++kv +I++++++LLa++n+++G+++++q++++++ +++k+++++   +++++++++                        ++
  CCD25826.2 324 DIIINGP-IDLEFFKVINKVLKIKKNATFLLALDNMEPGTNLINQINSIIQIINKKIFNFL---IDFVYDTSHinngtnnnnndnnnnnnnnsysnvND 418
                 *******.*****************************************************...99999988667788888888888888888888888 PP

        COG6 188 issllrkalrvLkerpvlFkecldevaeaRskalldeFisal...trgg..............pggsprPielsAhDplRYvGDmLAwvHqaiasErEl 269
                 +  +++k+l +L++++ +F+e++++v+++Rsk++ldeF+s++      +              +++ ++P++lsAhDp+RY+GD+LA++H++ia+E+++
  CCD25826.2 419 NVIIFQKSLIFLSNDLPYFDEFFKRVTSIRSKIILDEFLSQFelaH--HhssssshknnsktnSSDLNKPLILSAHDPIRYIGDVLASIHSIIANEADF 515
                 8888**************************************7531..256789999*****999********************************** PP

        COG6 270 lesLfkfqe...........gdeiakglqaknkeeleslkkeeeeeefdeelnklldrilegvcrplkvRvEqvlqseedlitlykianlleFYsstfs 357
                 ++sLfkf++           +++++++lq+kn e+l++l+             kll++i++++++++k+R+Eq++++e+++it+++i +ll++Y+++f+
  CCD25826.2 516 IKSLFKFKQilqqeeaqedaHNDSISYLQDKNLEFLTGLD------------LKLLNEIIQSLSNSIKLRIEQIIKFESNPITNFEILQLLKLYQMMFI 602
                 *******999987777777766677777777777777774............46********************************************* PP

        COG6 358 kl.lgsdssLvetleeleklakkkffsllkdklakll..pelp.p........sd.......................LspPewlsealskllellety 421
                 k+ ++s+ssL+++l  l++l+++k+++++++++++++  +  + +        ++                       L+pPewls++lsk++el+e++
  CCD25826.2 603 KKgIKSNSSLINNLIILQNLSNDKIINSFTQFIDNVKesN--QfAlttaattgTNttttthtakknisikhngnfgddLLPPEWLSTYLSKITELFEEI 699
                 ************************************9542..321333444551144555555666666666777777********************* PP

        COG6 422 esslas.......................easer...ekdfeevlsalldpllqacersakkle..kkdkaifliNcldliqstLspy....sfaskkv 488
                 +++ ++                       +   +   e+ +e+++ ++l++ +++++++akk+e  k++ ++++iNc+dli+s+L+p+    +++sk+ 
  CCD25826.2 700 DKRGTPfnddahddddddtiatedshdviN---QynmERLIESPIFDVLMKEIKNTFPLAKKNEsvKISLLTVQINCFDLINSRLQPFnhsrMIFSKSK 795
                 **9999********9999998876554443...055699999**********************999*********************99887888777 PP

        COG6 489 ........eelqaqieelvdtLveeqaselleksgLsdllnllnmiqpee......destyeplsenplmepeslke.alqkLdefLpsaltdalen.l 571
                         +++++++++++dt++e+q + l+ek+gLs ++nl+nmi+p++      d+++y++l +nplm+ +++++ +++kL+e+Lp+al+d++en l
  CCD25826.2 796 npnihkilDKINDNLQQFIDTMKELQEKLLFEKTGLSIYNNLFNMIFPIDavqdklDYDMYQSLLDNPLMNIDTINNtVHTKLNEYLPNALNDIQENlL 894
                 8************************************************************************************************** PP

        COG6 572 ekLqspklrseiteeaaeklveaYekleeaildpk........ngy.eepkslfrrtpeeirtl 626
                 +kL+sp++++ i+++++ k++ +Y+++++++ +++        n++ ++ + +++ ++ee +tl
  CCD25826.2 895 FKLNSPSIVDAICDHCFGKISLFYKIFRDVLFHLYanedvknaNEKkQKISDILNFSSEEFNTL 958
                 ***********************************66666544333233336666666666666 PP

>> Tsc35  Testis-specific protein 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.2         1     9e+03     105     135 ..     181     211 ..     179     218 .. 0.69
   2 ?    9.5   1.5   7.2e-05      0.65      72      98 ..     798     824 ..     793     856 .. 0.83
   3 ?    4.2   0.1    0.0032        28      48     105 ..     878     935 ..     865     948 .. 0.82

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 1
       Tsc35 105 liniqknnklPlrrgpkeqqelrllgktdkd 135
                  in+  nn + lr++ k  +e ++  +++++
  CCD25826.2 181 SINNDYNNTVKLRNSLKFLEEKKKSYNSNSN 211
                 5888889999999888877766665555554 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 7.2e-05
       Tsc35  72 qikdimdkdfdklkefveimkemqkdm 98 
                  i +i+dk  d l++f++ mke+q+ +
  CCD25826.2 798 NIHKILDKINDNLQQFIDTMKELQEKL 824
                 5899********************764 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0032
       Tsc35  48 vtkelknelrevreelkekmeeikqikdimdkdfdklkefveimkemqkdmdekmdvl 105
                   + l n l +++e+l  k++    +  i d+ f k+  f  i +++   +    dv 
  CCD25826.2 878 LNEYLPNALNDIQENLLFKLNSPSIVDAICDHCFGKISLFYKIFRDVLFHLYANEDVK 935
                 556689*************************************999876666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1769  (0.098667); expected 358.6 (0.02)
Passed bias filter:                      387  (0.0215851); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.33s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 6379.06
//
Query:       CCD25827.2  [L=508]
Description: hypothetical protein NDAI_0G00510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-27   96.7  59.6    3.1e-27   95.7  59.6    1.5  1  DUF2722   Protein of unknown function (DUF2722)


Domain annotation for each model (and alignments):
>> DUF2722  Protein of unknown function (DUF2722)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7  59.6   1.7e-31   3.1e-27      49     454 ..      33     499 ..       2     506 .. 0.63

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 1.7e-31
     DUF2722  49 tesssassepgkriedtgLlaLLGpnVssfpySEeafiealkLrteqErTKqeYYklEianknLeilktAlqAqiPvnlIpqlfvgnsdelseeale.. 145
                  +++   ++p +   +++L+ ++G+ Vs  ++  +a +++l+L++eqE+TKq+YYklE++ k++e++++A++ ++ ++ I +lf +ns++ s  + +  
  CCD25827.2  33 NNGDIKTKPPIH--SNSLLETIFGSTVSIENLPQQAILKSLDLKIEQEKTKQQYYKLENIAKSIELFRLATSSGLHSSHIFKLF-DNSAISSPTNHSss 128
                 222233333333..4899******************************************************************.88887666555599 PP

     DUF2722 146 ................................aqaqsgaqaqsasqaqksqsksestglvaseqvgdtfnaspnpplsykFgggsssnqptrlistsrR 212
                                                 +q q+++q+q+++q+++ qs +  + +v++e+     n + +  ++  ++   +    + ++ ++ R
  CCD25827.2 129 lgnpiandnsnpsnnslayveqehpnqpsalaQQRQQQQQQQQQQQMGEPQSYKFPPIIVNNEDE----NENARYTINSLLSSTKT---FPPSTFANGR 220
                 *****999999999999999888888888876666666666677777777766666666666642....44445555544432222...233446788* PP

     DUF2722 213 plsPakIGaaavanLatptap..lkeekl................sqvtassparr........qeaksHqRhsSlPtntsgissdLnaldsaeesqnk 285
                 ++sPa+IGa+ava L++ +    ++e  +                s        r+         ++ +H+R+sSlP+  +++s++ +  ++a  ++n+
  CCD25827.2 221 TNSPARIGAHAVAVLNEAVKMneYQE--TndsnnskygpkiesplS-------VRKnhnynhtpVTSTTHTRNSSLPA-LTTFSHNTSNNSNAVVNDNN 309
                 *****************654311443..256888888866655543.......333444444577899**********.77777777777777777777 PP

     DUF2722 286 qkpllq...........splGaTstiqv...kpipaqplhkqsksavqpsq..esmtsfq..hiiqfhhwkpeeesegesssasqtkshkRrksss.sf 365
                 +  l++            p G+ s + +   + + + p++++s + +++ +  +s++s +  h  q+ +     ++++ ++s+ + +s   ++s+s ++
  CCD25827.2 310 NGSLSNnidldsnntksIPPGMVSILSFhntNNSTNMPKMRKSGMINKKHRrvKSTSSQPnlHQRQYTSNPSLHKMNTLTPSSTISSSNSIQRSLSpHN 408
                 77766688899999998799******8832245667899999998877765114444443334445555555566777666666666666666664278 PP

     DUF2722 366 esidlnsasei.lkpaikfensaiasqekeddddddddekerkkeeek..dk..ekdsikadddkdlsmdssineegetevddanpptkshsrq 454
                   idln++++   +   k++n+  ++q+   d++++  e+ +  e     ++   ++sik+   ++ + d++ n + +++   +np  +++s++
  CCD25827.2 409 RPIDLNVINNSgTNG--KIKNEMGQQQQDIIDNNETCSENSSRAESPLrlTPplDDVSIKK-RANEAENDNNSNNNNNKNKILTNPNRQTQSQN 499
                 89******9642443..34444433333333333333333333333220011112333444.22333333333333333333334444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2105  (0.117408); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.31s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 3379.69
//
Query:       CCD25828.2  [L=575]
Description: hypothetical protein NDAI_0G00520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-36  124.7   0.0    6.4e-36  123.5   0.0    1.6  2  TPP_enzyme_N     Thiamine pyrophosphate enzyme, N-terminal TP
    3.4e-23   81.9   0.0    5.7e-23   81.2   0.0    1.4  1  TPP_enzyme_M     Thiamine pyrophosphate enzyme, central domai
    1.3e-18   67.2   0.1    7.8e-18   64.7   0.0    2.2  3  TPP_enzyme_C     Thiamine pyrophosphate enzyme, C-terminal TP
  ------ inclusion threshold ------
      0.061   12.9   0.0        3.2    7.3   0.0    2.6  3  Glycos_transf_1  Glycosyl transferases group 1


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.5   0.0   1.4e-39   6.4e-36       3     169 ..      12     176 ..      10     179 .. 0.95
   2 ?   -3.1   0.0       1.2   5.2e+03     128     150 ..     525     547 ..     467     554 .. 0.71

  Alignments for each domain:
  == domain 1  score: 123.5 bits;  conditional E-value: 1.4e-39
                   HHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEEE CS
  TPP_enzyme_N   3 vaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsgd 99 
                     e+++ +Lk + +++vfg++G  i++l +++  + gi+++ +r+Eq+a +aA++y  +tgkp+v+lv  gpG+++al ++++  ++++Pl+v++g+
    CCD25828.2  12 ITEYFIGLLKYYEIDTVFGIVGIPIVELANSMITH-GIKFISCRNEQAASYAASAYGFLTGKPAVLLVVGGPGLIHALAGVYNSTSNKWPLIVIAGS 107
                   5799*******************************.7***********************************************************9 PP

                   --CCCHH.S..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC-EEE CS
  TPP_enzyme_N 100 rptslrg.qgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlleevd 169
                   +  + ++  g++q  ldq++l+++ +ky+ r++  +++ ++   A+  a ++++g+ y+++p+++++ +v 
    CCD25828.2 108 NHDEIQEnLGGFQ-DLDQVSLLKDKVKYCGRLN-GSNINSVWYNAYNSAIQPPTGVSYIDFPEHLISNNVR 176
                   88877776999**.*****************96.678***************************9988765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.2
                   EE-SSGGGHHHHHHHHHHHHHSS CS
  TPP_enzyme_N 128 ervtspeelpealrrAirtalsg 150
                   + v++ ++l+ a++r +  a ++
    CCD25828.2 525 YLVENIKQLQTAFERSLNSARTS 547
                   56777888888888888777544 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   1.3e-26   5.7e-23       2     137 .]     200     330 ..     199     330 .. 0.92

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 1.3e-26
                   HHHHHHHHH-S..SEEEEE-CHHCHTTGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTT CS
  TPP_enzyme_M   2 ekaaellkaak..rpvilvGggvarsgaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgs 96 
                   +++a+ll++ +  ++++++G+g+   + s+ l +++ k+++P++ t+mgkg+i++ +pl+        s+a++ al ++D+vl++Gar+++  ++g+
    CCD25828.2 200 KEVAQLLRRNSdqNVLVIIGKGAV--NYSKGLSAFIHKYQFPFLPTPMGKGIISDMDPLN-------VSSARSSALSKSDIVLVFGARLNWLLHFGK 287
                   678888876543399*********..********************************99.......5899************************** PP

                   TTTTTTT-EEEEEESSCCCCTTCC..--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  97 epefapeakiihididpaeigkny..qvdlaivgdvketleaL 137
                    p++++  k+i  d dp+ ig+n+   ++++++gd++ ++++L
    CCD25828.2 288 PPKWKSTVKFILCDNDPHAIGNNNmqSINYSLLGDIGLIINEL 330
                   ****9999***************944488*********99987 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.44     2e+03      45      83 ..      71     109 ..      39     112 .. 0.78
   2 ?   -2.7   0.0         1   4.7e+03      44      60 ..     209     225 ..     202     234 .. 0.70
   3 !   64.7   0.0   1.7e-21   7.8e-18       3     151 ..     400     553 ..     399     555 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.44
                   TTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-S CS
  TPP_enzyme_C  45 pdrevvaivGDGgflmilqelatavrrnlpitvvvlnNe 83 
                    +  v  +vG  g+++ l  + ++  ++ p++v+   N+
    CCD25828.2  71 GKPAVLLVVGGPGLIHALAGVYNSTSNKWPLIVIAGSNH 109
                   334688999999999999999999999999999988775 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1
                   STTSEEEEEEEHHHHHH CS
  TPP_enzyme_C  44 kpdrevvaivGDGgflm 60 
                   + d++v +i+G G+  +
    CCD25828.2 209 NSDQNVLVIIGKGAVNY 225
                   45889999999998765 PP

  == domain 3  score: 64.7 bits;  conditional E-value: 1.7e-21
                   SHHHHHHHHH.HTTSSSSEEECETTTS-TTTHHHHHHHHHH....HSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHH CS
  TPP_enzyme_C   3 Gcltlwaarl.lkvkrprsyltsgglgtmGyglpaAiGakl....akpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqep 94 
                   G +t+++ar+ ++  +p++ l++g+ +tmG+gl+++i+a l     k + ++ +i GD++f ++  e++tavr +l ++++v+nN+g     g +++
    CCD25828.2 400 GANTMDIARIsFPSLKPKQRLDAGTNATMGVGLGYGIAARLsqdyMKSKPDILVIQGDSAFGFSAIEIETAVRFKLGLIIIVINNSGI--YHGTEQS 494
                   7889999**9999****************************7554255679**********************************876..3444444 PP

                   HTCCTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHH....CSSSEEEE CS
  TPP_enzyme_C  95 fggkrksgpagkdlkpvdfaklaealGakgarvekadveeleealkeal....ekkgpali 151
                   +  + +s pa k +++ ++  l  +lGa+g+ ve+   ++l+ a+++ l    ++ ++++i
    CCD25828.2 495 KKISPYSFPATKLSQKCRYDLLGIGLGAHGYLVENI--KQLQTAFERSLnsarTSSETSVI 553
                   4455677778788******************97777..*******9999555555556666 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.021        93      33      89 ..      84     146 ..      79     157 .. 0.79
   2 ?    7.3   0.0   0.00071       3.2      34      70 ..     200     237 ..     175     239 .. 0.79
   3 ?   -3.6   0.0       1.6     7e+03     114     127 ..     474     487 ..     460     489 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.021
                      HHHHHHCCCCC.HCSCEEEEEES......STTHHHHHHHHHHHCTTCGGGEEECCHSSSHHHH CS
  Glycos_transf_1  33 likafallkkq.lnpnvklviaG.....ngeeekelkklaeelelsdnviflgevsredleel 89 
                      li+a+a +    +n+   +viaG      +e++  +++l +   l+d+v++ g+++ +++ ++
       CCD25828.2  84 LIHALAGVYNStSNKWPLIVIAGsnhdeIQENLGGFQDLDQVSLLKDKVKYCGRLNGSNINSV 146
                      56666666444344445679999*99999999999********************98777665 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00071
                      HHHHHCCCCCHCSCEEEEEES...STTHHHHHHHHHHHC CS
  Glycos_transf_1  34 ikafallkkqlnpnvklviaG..ngeeekelkklaeele 70 
                       ++++ll+++  ++ +lvi+G   +++ k l++ +++++
       CCD25828.2 200 KEVAQLLRRN-SDQNVLVIIGkgAVNYSKGLSAFIHKYQ 237
                      4556666666.99********888899999999988885 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 1.6
                      HTT--EEEETTTTH CS
  Glycos_transf_1 114 aaglpviasnaggp 127
                      ++gl++i+ n++g+
       CCD25828.2 474 KLGLIIIVINNSGI 487
                      78999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4161.60
//
Query:       CCD25829.2  [L=274]
Description: hypothetical protein NDAI_0G00530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-20   72.9   1.0    1.8e-20   72.5   0.2    1.7  2  zf-Nse        Zinc-finger of the MIZ type in Nse subunit
     0.0001   22.2   2.2    0.00022   21.2   2.2    1.6  1  zf-RING_UBOX  RING-type zinc-finger
     0.0003   20.2   1.8      0.015   14.7   0.1    2.1  2  Rtf2          Rtf2 RING-finger
    0.00062   19.6   0.3     0.0016   18.2   0.3    1.7  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0028   18.0   1.3      0.008   16.5   1.3    1.8  1  zf-RING_2     Ring finger domain
     0.0069   16.2   0.3      0.017   15.0   0.3    1.7  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
        0.1   12.6   0.5       0.25   11.4   0.5    1.6  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
       0.15   11.8   2.2       0.19   11.5   0.4    2.2  2  zf-MIZ        MIZ/SP-RING zinc finger


Domain annotation for each model (and alignments):
>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.2   8.2e-24   1.8e-20       1      56 [.     179     234 ..     179     235 .. 0.99
   2 ?   -3.8   0.0       5.2   1.2e+04       9      16 ..     248     255 ..     245     258 .. 0.77

  Alignments for each domain:
  == domain 1  score: 72.5 bits;  conditional E-value: 8.2e-24
                 SXXXXXSSBXXSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC- CS
      zf-Nse   1 delaieeerislkCPltlqpfeePvtskkCpHvFEreaIlelikrkktvkCPvagC 56 
                 de+ ie+++i+l CP+t++p+e+P++skkC HvF+ e I+++++ + + +CP+ gC
  CCD25829.2 179 DEIHIEGGNIELICPITCKPYERPLISKKCGHVFDHEGIVNYLRGHGSRDCPQGGC 234
                 9******************************************************* PP

  == domain 2  score: -3.8 bits;  conditional E-value: 5.2
                 BXXSB-TT CS
      zf-Nse   9 rislkCPl 16 
                  +sl+C +
  CCD25829.2 248 IMSLRCKI 255
                 57899988 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   2.2   9.6e-08   0.00022       1      39 []     192     230 ..     192     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 9.6e-08
  zf-RING_UBOX   1 CpIClelftdPlvl.pCGHtFCreClwelskslegafkCP 39 
                   CpI   ++++Pl+  +CGH+F +e +  +  +++g++ CP
    CCD25829.2 192 CPITCKPYERPLISkKCGHVFDHEGI-VNYLRGHGSRDCP 230
                   ***********55558**********.7888999999998 PP

>> Rtf2  Rtf2 RING-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.2    0.0052        12     155     222 ..      35     113 ..      23     146 .. 0.72
   2 !   14.7   0.1   6.8e-06     0.015      35      93 ..     190     248 ..     163     271 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0052
        Rtf2 155 vCgkeykeedviplnptkeelellkarleeekakkkkkkkakkkkkakakgskaeaeaaskssseas...........e 222
                  C k+++e+   ++n    + e+l + l++  a+ ++++ + k+ + k ++ k+e + +s ++++ s            
  CCD25829.2  35 LCDKQFNETLDQIINSAAPNTEELIKSLTKTYAALNTERLTAKRLAGKLNTVKQEYKMKSDQCEQISlsnwdlyrtgeM 113
                 7********7778999999999999999999999888888888888888888888888888777666555555444440 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 6.8e-06
        Rtf2  35 klCaLsqepLkkPivadrlGkLYnkdavleaLldkskekslskaashikglkdvvelkl 93 
                  +C ++ +p ++P ++ + G+ +  + ++++L+   +    +  + ++ +++d+v  k+
  CCD25829.2 190 LICPITCKPYERPLISKKCGHVFDHEGIVNYLRGHGSRDCPQGGCGKVVSMRDFVPDKI 248
                 47*****************************9988765555567779999999886554 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   7.1e-07    0.0016       2      39 ..     192     231 ..     191     232 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 7.1e-07
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekn..eCPl 39 
                 Cpi    ++ p+ +++CgHvf  + i  +L+ +    CP+
  CCD25829.2 192 CPITCKPYERPLISKKCGHVFDHEGIVNYLRGHGsrDCPQ 231
                 99*99*************************9887678996 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.3   3.6e-06     0.008       3      41 ..     192     230 ..     190     234 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 3.6e-06
   zf-RING_2   3 CpICleelssadsvlllpCgHvfhreClerwlrssst..CP 41 
                 CpI +++++  + ++ ++CgHvf++e + ++lr + +  CP
  CCD25829.2 192 CPITCKPYE--RPLISKKCGHVFDHEGIVNYLRGHGSrdCP 230
                 788777775..5666678*****************999**9 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.3   7.7e-06     0.017       1      39 [.     192     230 ..     192     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 7.7e-06
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--T CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCP 39 
                 Cpi ++ ++ p  + +C+H f ++ i+++l+ ++++ CP
  CCD25829.2 192 CPITCKPYERPLISKKCGHVFDHEGIVNYLRGHGSRDCP 230
                 9*************************************9 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.5   0.00011      0.25      19      75 ..     176     230 ..     148     240 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
                 SSSSB-TTT-SBTTS--TTCSTTTTTS-EEEBTTS-EEEHHHHHHHHHHHSTSSB-T CS
  zf-ANAPC11  19 asddvcGicrvsfdGtcpsckfpGddcplvlGkckhnfhlhcilkwletetskglcp 75 
                 a+dd   i   + +  cp    p  + pl+  kc h+f +  i+++l  + s++ cp
  CCD25829.2 176 ADDDEIHIEGGNIELICPITCKPY-ERPLISKKCGHVFDHEGIVNYLRGHGSRD-CP 230
                 456666777777778899766675.579********************999875.66 PP

>> zf-MIZ  MIZ/SP-RING zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.4   8.7e-05      0.19       1      27 [.     188     212 ..     188     231 .. 0.82
   2 ?   -2.5   0.1         2   4.5e+03       1       8 [.     249     256 ..     249     262 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 8.7e-05
                 EESB-TTTSSB-SSEEEETT--SS--E CS
      zf-MIZ   1 vslkCplslsrikiPvrgekCkHlqCf 27 
                 ++l Cp+++++ + P  ++kC H+  f
  CCD25829.2 188 IELICPITCKPYERPLISKKCGHV--F 212
                 6799*******************8..4 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2
                 EESB-TTT CS
      zf-MIZ   1 vslkCpls 8  
                 +sl+C + 
  CCD25829.2 249 MSLRCKID 256
                 79999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2135.59
//
Query:       CCD25830.2  [L=275]
Description: hypothetical protein NDAI_0G00540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       368  (0.0205254); expected 358.6 (0.02)
Passed bias filter:                      252  (0.0140554); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2028.44
//
Query:       CCD25831.2  [L=412]
Description: hypothetical protein NDAI_0G00550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.1e-15   55.1   0.0    1.4e-14   54.3   0.0    1.3  1  rve              Integrase core domain
  ------ inclusion threshold ------
      0.019   14.8   0.2      0.041   13.7   0.2    1.6  1  gag_pre-integrs  GAG-pre-integrase domain
      0.081   12.7   0.0       0.14   11.9   0.0    1.4  1  rve_3            Integrase core domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   2.4e-18   1.4e-14       3     117 ..     289     406 ..     288     408 .. 0.90

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 2.4e-18
         rve   3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggve...pervlsDngseytskafrefladlgirvsft 97 
                 +p e++++D++  v+  d  + +y++ ++d  +r+ ++++l+++ da+++l + ++ v + + +    ++++++D+gseyts  +r++ +  gi + +t
  CCD25831.2 289 EPFEYIHTDLFgPVSGVDITSPKYFISFTDENTRFRWVFPLKKK-DADHILPIFQQLVNYIKTQFkvrVLTFHMDRGSEYTSTMVRDYFKVKGIIPIYT 386
                 799********9888788888***********************.99998887777777776666666******************************* PP

         rve  98 rpgrpqdnGkvErfhrtlkd 117
                  +g++ +nG++Er++ t+ +
  CCD25831.2 387 TVGDSSSNGIAERANLTFLN 406
                 **************998766 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.2   6.9e-06     0.041      18      66 ..     215     270 ..     196     271 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 6.9e-06
  gag_pre-integrs  18 sknkssinlWHrRLGHpsfsrlkkLfkkgllpglkisk.......sevCeaCqlgK 66 
                      +  k ++   Hr + H++++  +k ++++l+ ++ i++       +++C+ C  gK
       CCD25831.2 215 AFQKFPLTFVHRLFDHINVKDTRKSIESKLITNIRINDvdwtgidKFQCKDCLAGK 270
                      4456678889************************99776666666889*******9 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.4e-05      0.14       2      31 ..     380     409 ..     379     412 .] 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.4e-05
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdell 31 
                 gi + y+ +g+   Ng +E+ n t+ + + 
  CCD25831.2 380 GIIPIYTTVGDSSSNGIAERANLTFLNDCR 409
                 677889********************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3111.20
//
Query:       CCD25832.2  [L=1069]
Description: hypothetical protein NDAI_0G00560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1069 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4120  (0.229795); expected 358.6 (0.02)
Passed bias filter:                      717  (0.0399911); expected 358.6 (0.02)
Passed Vit filter:                       160  (0.00892409); expected 17.9 (0.001)
Passed Fwd filter:                        40  (0.00223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.44u 0.37s 00:00:01.81 Elapsed: 00:00:00.53
# Mc/sec: 6040.13
//
Query:       CCD25833.2  [L=246]
Description: hypothetical protein NDAI_0G00570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-34  117.3   0.0    9.7e-34  116.9   0.0    1.1  1  Pro_CA    Carbonic anhydrase


Domain annotation for each model (and alignments):
>> Pro_CA  Carbonic anhydrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   5.4e-38   9.7e-34       1     156 []      77     235 ..      77     235 .. 0.89

  Alignments for each domain:
  == domain 1  score: 116.9 bits;  conditional E-value: 5.4e-38
                 EEEEEETTTTS-HHHHTTS-TTSEEEEEETTG---TT-HHHHHHHHHHHHTS--SEEEEEEETT-HHHHHHHS...HHCCSTTSSHHHHHHHHHHHHHH CS
      Pro_CA   1 alvigCsDSRvppelitdagpGdlFvvrnvgnlvppadssvlaaleyAvevlkvkhivVlGHskCGavkaalk...aekseeeagaidkwlekireale 96 
                 +l+igCsDSR++ e i+++ pG++F+ r ++nl+ p+ + + ++leyA+  lkv++i+++GH++CG++ ++l+   ++  ++  + + ++le ++++++
  CCD25833.2  77 TLFIGCSDSRYN-ESILGVLPGEVFTWRSIANLCLPDCNIFKSTLEYALLCLKVNKIIICGHTDCGGIMTCLRnerDSLLKQGCSTLYDYLEDVENMYN 174
                 69*********5.7888*****************9999999****************************999876544556678888889999999999 PP

                 HCHHHHHTTS.SHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTTS-EEEEEEEETTTTEE CS
      Pro_CA  97 kveeelesek.ekearerlleeenVaeqlenLlekpvvreavekgklkvhGlvydletGev 156
                  + e+ + +k  + ++ + l+  n ++q+++++++++v++ +++++l+v+Gl+y++++G v
  CCD25833.2 175 DHLEQVKIIKgGEYEKGKYLSTINLVKQFDRIVSYDIVQNGIKNNQLEVYGLIYNVHSGLV 235
                 98777666667666667778**************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      376  (0.0209716); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1842.62
//
Query:       CCD25834.2  [L=652]
Description: hypothetical protein NDAI_0G00580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-49  167.5   0.0    7.9e-49  166.6   0.0    1.4  1  Glyco_hydro_15  Glycosyl hydrolases family 15
  ------ inclusion threshold ------
       0.15   12.4   0.0       0.38   11.1   0.0    1.8  1  eRF1_2          eRF1 domain 2
        9.4    6.9  11.2       0.43   11.1   3.7    2.6  3  Secretin_N_2    Secretin N-terminal domain


Domain annotation for each model (and alignments):
>> Glyco_hydro_15  Glycosyl hydrolases family 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.6   0.0   1.3e-52   7.9e-49      16     443 ..     149     635 ..     138     640 .. 0.87

  Alignments for each domain:
  == domain 1  score: 166.6 bits;  conditional E-value: 1.3e-52
                     SSBTTS-TT-B-S-S-BSSSB--SEEHHHHHHHHHHHH...........HHHHHTTT-HCCHHHHHHHHHHHHHHCTS-BTTB-T....TSCG.G CS
  Glyco_hydro_15  16 lleqnpvtGlliASpstsdpDYrytWvRDsvyvilavwglg....yrdedrakayeleqslvklmrglleamvrqagkvekfket....qstk.g 101
                     ++  n   G++iASps+s+pDY+y+W+RD +++++ + +       +d  ++   +++++l +++ ++l+  ++ ++  ++++++    +++  g
      CCD25834.2 149 MSKFNVTEGVIIASPSKSKPDYFYQWIRDGSICMNSLSSNLlimsSHDVHQKEKVGINKTLSTTILKYLNNSYNLQRLDNPSGKSitinKDSLtG 243
                     55556668****************************996555544559999999999*******************999998875333333346* PP

                     GG--EE-TTS-B--S-..-S--BTTHHHHHHHHHHHH...............................HCTT........HCHCCCCHHH.HTHH CS
  Glyco_hydro_15 102 LhakyftktgstvvGddewghlQlDatslyllalaqm...............................tasg........lqiistldev.afvq 156
                     L++++++++++++     wg++Q+D+++l+ +++  +                                           l ++++l  + ++v 
      CCD25834.2 244 LGEPKWYANNTAFNLH--WGRPQNDGPALRTITVLNLlnhlasnnlkfedlikvsfssssdnsnnnnnN--NnnnnnnnkLPFVNDLEVFqKIVF 334
                     *************999..*****************9999999888888888888888777776665550..0556666779999999999999** PP

                     HHHHHHHHHTTS-EE-TTS--ECEEHH..HHHHHHHHHHHHHHHHHHCT-HHHHCCHHHHHHHHHHHHHSTTT..GGGEETTCCECECSCH.... CS
  Glyco_hydro_15 157 nlvdYieaayktpdfglWEenqgeselnassvgmakAlleaideadlfgakgdaqlvektkdeilnklqgkygckrgfwplfntylildgsfaed 251
                      ++++i+ +++   ++lWEe  g++++  +++++  A+ ++++++++  + ++ +  e+  +e ++k+         f  ++ ++++ +++   +
      CCD25834.2 335 WDLKFICLHWNDETYDLWEEIYGKHFF--TTIVQLSAVKKGLEFIRKQNNMDEYSQFEDLLQETYDKM-------LNFILSQDYFINSNKNHIVE 420
                     ***************************..****************99998886666666666666666.......45556667777777777777 PP

                     .HHHTTS--S-BCHHHHHHHHCS-TTS-TT-TT-TTTS..........HHHHHHHHHHHHHHHHHSGGGTT-STTS....--SBTT--CGSSSBS CS
  Glyco_hydro_15 252 keqvqeyrealdasllllpelyfvpaddvdeeyqnpqs..........prllaqslyildsllsegflavgeldpl....vrRysedvkpdklgl 332
                     +    ++r++ld +++l++ + + +  +  +  +np s          + +l++++ +++s++  ++++  +++ +     +Ry+edv+++   +
      CCD25834.2 421 SPNFLDSRSGLDIAVILGSLYSHHNSLN--DPEDNPISmsslpfdiddSGILNTLFGLVRSMSMIYPINHQRVNLKigvaLGRYPEDVYDGVGFS 513
                     777999*********8888777766655..8889999999********************************99999999**********9999* PP

                     CT--BHHHHHHHHHHHHHHH...HHHHHHTE-EEEECCCHHHHHHHTTT........TTGGGSSEEETCHHHHHHHHHHHHHHHHHHHHHH.S-T CS
  Glyco_hydro_15 333 sGrpyylctlwtvetlldel...yekagkgrlwglvryalglleklves........kqltvGlpperesvisaplpveeladliveavee.dns 415
                     +G+p++l+t  ++e l++ +   y+ ++++  ++l +  ++++  + +         k ++  +p+++  + + ++ +  la+++++  +e   +
      CCD25834.2 514 EGNPWFLATSGAAELLYKLIwknYKFEKDLM-IPLNSWDSQFWTLIFDGfndiehdgKTYQLVIPYKSPAFEQTMTLLFDLAESFLDKLREhVSD 607
                     *****************98732255555554.9**********************************************************9999 PP

                     TS---SEE-TTT--EESSTT-HHHHHHH CS
  Glyco_hydro_15 416 lgvLteevdvylgeliraqpllfseall 443
                      g ++e++++ +g l +a +l++s+ ++
      CCD25834.2 608 HGDMSEQFNKFSGYLQGADHLTWSYSSF 635
                     9***********************9876 PP

>> eRF1_2  eRF1 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.4e-05      0.38      55     126 ..     134     211 ..     105     219 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.4e-05
                 HHHHHHHHHHHHHHHHHCHTTTESEEEEEESSTHHHHHHHHHHHHHHHHT.......CCEEEEE-S-TSCHHHHHHHHC CS
      eRF1_2  55 eeflkkvaeaankafllvdkdklkgiilagpgfvkeefldkdlldaelkk.......kviklvdvsyggesglnevlek 126
                 e+ l ++a++ +++++  ++++ +g+i+a+p++ k +++ + + d             ++   dv ++++ g+n  l +
  CCD25834.2 134 ERILLNIADENHNDLM-SKFNVTEGVIIASPSKSKPDYFYQWIRDGSICMnslssnlLIMSSHDVHQKEKVGINKTLST 211
                 4556678888888878.599999************77654444333332233444544455778888888888877765 PP

>> Secretin_N_2  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2      0.86   5.1e+03      51      71 ..      74     104 ..      57     107 .. 0.43
   2 ?   11.1   3.7   7.2e-05      0.43      21      43 ..     295     317 ..     284     336 .. 0.60
   3 ?   -2.7   0.0       1.5     9e+03      56      80 ..     620     646 ..     604     646 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.86
  Secretin_N_2  51 sssnss..........sgtkietesesdfwg 71 
                   ++++++            t++ ++++ +f++
    CCD25834.2  74 QKKTNNitiydfykkpDLTTTISTNQKEFYK 104
                   2222224556666666444444444445665 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 7.2e-05
  Secretin_N_2  21 vtsGsvsssgsssssssssssss 43 
                   v+++s s++++++++++++++++
    CCD25834.2 295 VSFSSSSDNSNNNNNNNNNNNNN 317
                   44444444444444444444222 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.5
  Secretin_N_2  56 s..sgtkietesesdfwgeLqkalesm 80 
                   +  +g+   t s s+fw+  q  l++m
    CCD25834.2 620 GylQGADHLTWSYSSFWNCYQIRLKAM 646
                   245777777888899999888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1130  (0.0630264); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.44
# Mc/sec: 4435.50
//
Query:       CCD25835.2  [L=196]
Description: hypothetical protein NDAI_0G00590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-18   66.5   0.1    2.6e-18   65.6   0.1    1.4  1  PIG-H     GPI-GlcNAc transferase complex, PIG-H component
  ------ inclusion threshold ------
        3.4    8.4  13.7       0.11   13.2   5.6    2.2  2  DUF3139   Protein of unknown function (DUF3139)


Domain annotation for each model (and alignments):
>> PIG-H  GPI-GlcNAc transferase complex, PIG-H component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.1   2.9e-22   2.6e-18       1      71 [.      93     166 ..      93     167 .. 0.94

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 2.9e-22
       PIG-H   1 SllvlrglGvQlsss..yl..srllpfsggtsrrFiplekirdvvInEaf.kgfeViyyLaivvegeeekklvvvF 71 
                 S++vl++ G+Q+s+   yl  +++ + +  ++++F+p +ki+d++InE+f  g +Vi+y+a+++++ +e  l+++F
  CCD25835.2  93 SFTVLKDNGIQISKIdgYLflPMKYNEQLCCQNEFFPNDKIIDIIINEGFyPGSQVIFYMAVLIKDYKE--LKLLF 166
                 899**************5557999999***********************99**************999..99999 PP

>> DUF3139  Protein of unknown function (DUF3139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.4      0.23     2e+03       6      19 ..      46      59 ..      41      73 .. 0.56
   2 ?   13.2   5.6   1.2e-05      0.11      12      79 ..      74     162 ..      66     166 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.23
     DUF3139  6 iililliillvivk 19
                ii +++i +l+ +k
  CCD25835.2 46 IISCIIITFLLYLK 59
                45555555544433 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.2e-05
     DUF3139  12 iillvivkvflglvgskpikkylan.......kkldkyl............qekgykeddIks..ikpkydskkg.syyakVvFKDepnl 79 
                 i ++vi++++l ++++  i+++++         k+d yl            q +  ++d+I +  i   +++     +y+ V +KD  +l
  CCD25835.2  74 I-IIVILVMILSYFKNPRIESFTVLkdngiqiSKIDGYLflpmkyneqlccQNEFFPNDKIIDiiINEGFYPGSQvIFYMAVLIKDYKEL 162
                 2.2222223334667777777777767777779******************************99899999999989999******9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1143  (0.0637515); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1356.74
//
Query:       CCD25836.2  [L=488]
Description: hypothetical protein NDAI_0G00600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-15   57.0   0.0    4.6e-15   55.9   0.0    1.6  1  rve              Integrase core domain
    4.5e-05   23.2   0.1    0.00012   21.9   0.1    1.8  1  gag_pre-integrs  GAG-pre-integrase domain
     0.0065   16.5   1.7        2.6    8.2   0.4    3.0  3  Xrn1_D3          Exoribonuclease 1 Domain-3
  ------ inclusion threshold ------
      0.037   13.8   0.0      0.095   12.5   0.0    1.7  1  rve_3            Integrase core domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0     1e-18   4.6e-15       4     117 ..     185     301 ..     183     303 .. 0.90

  Alignments for each domain:
  == domain 1  score: 55.9 bits;  conditional E-value: 1e-18
         rve   4 pgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggve...pervlsDngseytskafrefladlgirvsftr 98 
                 p +++++D++  v+  d  + +y++ ++d  +r+ ++++l+++ da+++l + ++ v + + +    ++++++D+gseyts  +r++ +d gi + +t 
  CCD25836.2 185 PMSYIHTDLFgPVSGVDITSPKYFISFTDENTRFRWVFPLKKK-DADHILPIFQQLVNYIKTQFkvrVLTFHMDRGSEYTSTMVRDYFKDKGIIPIYTT 282
                 8999******9888788888***********************.99998887777777776666666******************************** PP

         rve  99 pgrpqdnGkvErfhrtlkd 117
                 +g++ +nG++Er++ t+ +
  CCD25836.2 283 VGDSSSNGIAERANLTFLN 301
                 *************998765 PP

>> gag_pre-integrs  GAG-pre-integrase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   2.6e-08   0.00012      15      66 ..     110     168 ..      77     169 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.6e-08
  gag_pre-integrs  15 vslsknkssinlWHrRLGHpsfsrlkkLfkkgllpglkisk.......sevCeaCqlgK 66 
                      v++ + k s+ l Hr +GH++++ +kk ++++++  + i++       +++C+ C  gK
       CCD25836.2 110 VHVLSQKFSLTLIHRLFGHINVRDIKKSIESKSITTIRINDvdwsgidKFQCKDCLTGK 168
                      45666788999**********************999998665566666789******99 PP

>> Xrn1_D3  Exoribonuclease 1 Domain-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0028        13      20      38 ..     134     152 ..     128     177 .. 0.79
   2 ?   -3.1   0.0       1.9   8.7e+03      39      49 ..     237     247 ..     233     250 .. 0.65
   3 !    8.2   0.4   0.00058       2.6      16      60 ..     404     451 ..     398     461 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0028
     Xrn1_D3  20 vkVslESdSltkfSiaaiE 38 
                 +k s+ES+S+t++ i++++
  CCD25836.2 134 IKKSIESKSITTIRINDVD 152
                 788************9997 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.9
     Xrn1_D3  39 dyvenYivqev 49 
                 +++ nYi+++ 
  CCD25836.2 237 QQLVNYIKTQF 247
                 56667777765 PP

  == domain 3  score: 8.2 bits;  conditional E-value: 0.00058
     Xrn1_D3  16 kadlvkVslESdSltkfSiaai.EdyvenYivqevkle..sKdlagVP 60 
                 ++++v V  +S Sl+  S   + ++ +e Y v++  ++  +  ++ VP
  CCD25836.2 404 TSNYVIVVHDSTSLSESSTHSVfDNLLESYHVTDADTDlqKAAVEDVP 451
                 799***************988747889****99976652133466677 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.1e-05     0.095       2      34 ..     275     307 ..     274     316 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.1e-05
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdellnee 34 
                 gi + y+ +g+   Ng +E+ n t+ + + +  
  CCD25836.2 275 GIIPIYTTVGDSSSNGIAERANLTFLNDCRTLL 307
                 677889*********************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3396.09
//
Query:       CCD25837.2  [L=399]
Description: hypothetical protein NDAI_0G00610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-11   43.6   0.1    2.2e-11   43.0   0.1    1.1  1  Vps35            Vacuolar protein sorting-associated protein 
  ------ inclusion threshold ------
      0.025   14.6   0.0        5.1    7.2   0.1    2.5  2  Lambda_CIII      Lambda Phage CIII
      0.066   12.9   0.0       0.11   12.2   0.0    1.3  1  Retrotran_gag_2  gag-polypeptide of LTR copia-type


Domain annotation for each model (and alignments):
>> Vps35  Vacuolar protein sorting-associated protein 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.1   3.7e-15   2.2e-11     670     710 ..      16      56 ..      11      74 .. 0.82

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 3.7e-15
       Vps35 670 gkrvleCLqkslriAdsimdnavslelfveiLnkylyyfek 710
                 +k  +eC+q+s+riAdsimd + s++l++eiLn+++y+  k
  CCD25837.2  16 RKYTMECMQRSIRIADSIMDGLISCQLLIEILNQCIYFNTK 56 
                 6889**********************************533 PP

>> Lambda_CIII  Lambda Phage CIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1   0.00085       5.1      20      38 ..      28      49 ..      21      50 .. 0.88
   2 ?    4.5   0.0    0.0062        37      12      34 ..     352     374 ..     343     377 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00085
  Lambda_CIII 20 RitrklReg...wkrlidiLNQ 38
                 Ri++ + +g   ++ li+iLNQ
   CCD25837.2 28 RIADSIMDGlisCQLLIEILNQ 49
                 8999999977779********9 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.0062
  Lambda_CIII  12 vpqESlLdRitrklRegwkrlid 34 
                  +p+E l +Ri+  l + ++ ++d
   CCD25837.2 352 IPNEVLCQRIASNLTDSYRPIAD 374
                  688****************9999 PP

>> Retrotran_gag_2  gag-polypeptide of LTR copia-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.8e-05      0.11      51     125 ..     315     389 ..     307     398 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.8e-05
  Retrotran_gag_2  51 tlrkklfslkmkegesvadhinkleelvneLsalgvkiddedkvvllLasLPesyetfvtaiesseedltleevi 125
                        +++l + k++ +++   + + l++l+ + +++g  i++e ++  + + L++sy+ + + ++++  +++le++ 
       CCD25837.2 315 EIYEQLLAVKYDGKSDAILFKKLLNSLIAKGEKVGIHIPNEVLCQRIASNLTDSYRPIADFYRMNYGNVSLEDLL 389
                      57899*********************************************************9999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3043.33
//
Query:       CCD25838.2  [L=645]
Description: hypothetical protein NDAI_0G00620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.4e-26   90.3   0.0    5.4e-26   90.3   0.0    3.5  3  Myb_DNA-bind_7   Myb DNA-binding like
    3.2e-10   40.0   0.0      1e-09   38.4   0.0    1.9  1  Myb_DNA-binding  Myb-like DNA-binding domain
  ------ inclusion threshold ------
      0.053   14.3   0.3         11    6.8   0.1    3.0  2  PulA_N1          Pullulanase N1-terminal domain
       0.19   12.0   0.1       0.19   12.0   0.1    2.5  3  Myb_DNA-bind_6   Myb-like DNA-binding domain


Domain annotation for each model (and alignments):
>> Myb_DNA-bind_7  Myb DNA-binding like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   7.4         2   8.8e+03      46      81 ..     350     385 ..     334     392 .. 0.66
   2 !   90.3   0.0   1.2e-29   5.4e-26       2      80 ..     454     532 ..     453     538 .. 0.94
   3 ?   -1.9   0.6      0.72   3.2e+03      51      84 ..     550     583 ..     547     585 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2
  Myb_DNA-bind_7  46 KlKFkkEerknpeliekalkkrkeldleefkeeaek 81 
                     K+K+k+E rk+ ++  ++l++ ++ + ee +e+ ++
      CCD25838.2 350 KRKYKREMRKRAREEFRSLRSLNKEEEEEERENRKQ 385
                     89*****99988766666665555333333333333 PP

  == domain 2  score: 90.3 bits;  conditional E-value: 1.2e-29
  Myb_DNA-bind_7   2 frkrkktkkWskeetekFYkaLsqfGtDFsliaklfpkrtrrqlKlKFkkEerknpeliekalkkrkeldleefkeeae 80 
                     + +++ t++W++ee  kFYkaLs++GtDF+lia+lfp+rtrrq+K+KF +Ee+k+p +ie al++r + +++++   ++
      CCD25838.2 454 YGRNSFTDPWTTEEIIKFYKALSMWGTDFNLIAQLFPYRTRRQIKSKFINEEKKHPIMIELALRSRLPPNFDQYCADIR 532
                     889999**************************************************************99999987665 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.72
  Myb_DNA-bind_7  51 kEerknpeliekalkkrkeldleefkeeaekeke 84 
                      E ++n ++i+ a  + k  d++ +ke a++ ++
      CCD25838.2 550 LEHQENLKQIQLAKDNAKMEDSTLVKEDASNTNK 583
                     6899999999999888888888888887776655 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.3e-13     1e-09       2      44 ..     461     503 ..     460     504 .. 0.96

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 2.3e-13
                      SSSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrn 44 
                       +Wt+eE  ++++a+ ++G ++++Ia+ ++ Rt+ q++s++ n
       CCD25838.2 461 DPWTTEEIIKFYKALSMWGTDFNLIAQLFPYRTRRQIKSKFIN 503
                      69***************************************87 PP

>> PulA_N1  Pullulanase N1-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0025        11      24      75 ..     379     430 ..     370     432 .. 0.82
   2 ?    4.2   0.0     0.017        75       7      54 ..     481     528 ..     480     552 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0025
                 -S-EEEEESSEEEEEEEEEEEEESSEEEEEEE-SS---TTS--EEE-TTS-E CS
     PulA_N1  24 sssfllkeedekieLeikekeeleeevkYvckleeelelgkeylildehgnk 75 
                  ++  ++  ++  + ++ ++++ +++++ +++ +++l +++e +++d h+n 
  CCD25838.2 379 ERENRKQAAEKLLNTDVPDSYKPHTAIQLKLNPDGTLAVDEESTVVDRHKNA 430
                 334466677788899999*******************************986 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.017
                 ETTEEEEEEEGGGTTTS-S-EEEEESSEEEEEEEEEEEEESSEEEEEE CS
     PulA_N1   7 elntItillpksyeegesssfllkeedekieLeikekeeleeevkYvc 54 
                 ++n+I+ l+p++++ + +s+f+ +e+++ i +e+  + +l  ++  +c
  CCD25838.2 481 DFNLIAQLFPYRTRRQIKSKFINEEKKHPIMIELALRSRLPPNFDQYC 528
                 7899*****************999999998888877777766655555 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   6.2e+03      34      55 ..     422     448 ..     419     451 .. 0.68
   2 ?   12.0   0.1   4.3e-05      0.19       1      41 [.     463     503 ..     463     513 .. 0.77
   3 ?   -3.6   0.1       3.2   1.5e+04       7      24 ..     543     560 ..     541     572 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.4
  Myb_DNA-bind_6  34 qcfdrwkn.kL....rpkisrkkwske 55 
                     ++ dr+kn +L    ++k+  +++ k 
      CCD25838.2 422 TVVDRHKNaSLenahKQKVDENPFEKL 448
                     688888886334444888888888775 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 4.3e-05
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealnrRtpkqcfdrwkn 41 
                     Wt eE  +  k  ++ g d+++Ia+ ++ Rt  q++ +++n
      CCD25838.2 463 WTTEEIIKFYKALSMWGTDFNLIAQLFPYRTRRQIKSKFIN 503
                     555554444444444578*********99**********99 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 3.2
  Myb_DNA-bind_6   7 eiLlklvekygndWknIa 24 
                     ++L +l  +++ + k+I+
      CCD25838.2 543 KKLEDLQLEHQENLKQIQ 560
                     566677777777888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2066  (0.115232); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 4017.53
//
Query:       CCD25839.2  [L=397]
Description: hypothetical protein NDAI_0G00630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-07   29.9   2.9     0.0044   17.8   0.2    3.4  3  WD40      WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.026   14.2   0.0      0.053   13.2   0.0    1.4  1  UL40      Glycoprotein of human cytomegalovirus HHV-5


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   1.3e+04      13      24 ..      41      46 ..      34      57 .. 0.61
   2 !   17.8   0.2   4.9e-07    0.0044       3      38 .]     143     181 ..     141     181 .. 0.80
   3 !   10.9   0.1   7.7e-05      0.69       6      38 .]     290     325 ..     285     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
                EEEEEEETTSSE CS
        WD40 13 vtslafspdgaw 24
                +++l+      +
  CCD25839.2 41 IHCLD------F 46
                88884......3 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 4.9e-07
                 EEEEEE.SS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   3 clrtlt.GH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 +lr+l   H ++vt+l+f+p+ + ++ sGs Dg   ++d
  CCD25839.2 143 PLRSLIdSHhDDVTALKFHPSDPTVLlSGSTDGYTNVYD 181
                 677764366699************644***9**988887 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 7.7e-05
                 EEESSSS..EEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   6 tltGHss..vtslafspdgawla.sGsdDgtvriWd 38 
                 + ++H++  ++++  +p+++ l+ s+++Dg v +W+
  CCD25839.2 290 IPSAHGDevIRDVFIPPSHSELVySCGEDGFVNLWK 325
                 5689955677***98888888766***********6 PP

>> UL40  Glycoprotein of human cytomegalovirus HHV-5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.9e-06     0.053      84     160 ..     153     231 ..     145     251 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.9e-06
        UL40  84 ntvvafshhpadntllievgnntrrhvdgiscqdhfraqhqdcpaqtvhvrgv..nesafglthlqscclnehsqlser 160
                 + v a+  hp+d t+l+    +    v  ++ qd   a hq     ++h  g    +  f l+h+++ ++ e  + se 
  CCD25839.2 153 DDVTALKFHPSDPTVLLSGSTDGYTNVYDLTQQDEDDALHQVMNYASIHSCGWlsPNRIFTLSHMETFAIHELNDKSEE 231
                 67999**********************************************96225689********999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1515  (0.0845); expected 358.6 (0.02)
Passed bias filter:                      656  (0.0365888); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 2776.20
//
Query:       CCD25840.2  [L=621]
Description: hypothetical protein NDAI_0G00640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-38  132.8   0.1    3.1e-38  131.6   0.0    1.5  2  Pkinase      Protein kinase domain
    4.8e-29  101.4   0.0    9.6e-29  100.4   0.0    1.5  1  Pkinase_Tyr  Protein tyrosine kinase
    0.00081   18.8   0.0     0.0018   17.7   0.0    1.5  1  Kinase-like  Kinase-like
  ------ inclusion threshold ------
       0.21   11.5   0.1        1.5    8.7   0.1    2.0  2  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0     7e-42   3.1e-38       8     260 ..      29     294 ..      23     296 .. 0.86
   2 ?   -3.8   0.1       1.5   6.7e+03     200     206 ..     574     580 ..     541     606 .. 0.53

  Alignments for each domain:
  == domain 1  score: 131.6 bits;  conditional E-value: 7e-42
                 EEESSEEEEEEEETT.....TTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS.CTTB--EEEEEEE.......SSEEEEEEE--TTEBHHHHHH..H CS
     Pkinase   8 GeGsfGkVykaveke.....tgkivAvKkikkekakkkkekkvlrEikilkklk.hpnivrlyevfee.......kdelylvleyveggeladlle..r 91 
                  +G+f++Vy a  +      ++ iv++K++ + ++ + +  ++++E+  +k l+   ++v ++++          + e++l++ey++ g l d+++   
  CCD25840.2  29 TSGGFAQVYTAEISPidpfiNSSIVCLKRVIVPDKPSLN--TLRAEVDAMKLLRnNTHVVSYIDSHAAkfdtnigSYEVFLLMEYCDRGGLIDFMNtrL 125
                 56777777777644322233678999****999888866..5************99*********9999999999999*****************9643 PP

                 HSS--HHHHHHHHHHHHHHHHHHHHTT..EE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..........BCTTTSCGGGS-HHHH...TTSCBS CS
     Pkinase  92 kgslseeeakkiakqilegleylHskg..iiHrDlKpeNiLidekgelKitDFGlakelesssk..........ltsfvgtseYlAPEvl...keneys 175
                 +  l e+e+ +i++q+ +g++ +H+ +  ++HrD+K eN+L+ ++g+ K++DFG ++ + +  +                t +Y++PE++   k+ ++ 
  CCD25840.2 126 QNRLHENEILDIMSQVSQGVAAMHALQppLLHRDIKIENVLLTSRGHYKLCDFGSVCGIIRPPTnpqeftyvqhDIMKNTTAQYRSPEMInlgKGLPIN 224
                 455*********************87777***************************99999888899999976533456799*********999999** PP

                 HHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHT CS
     Pkinase 176 kkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellq 260
                 +k+D+W+lGv ly+l + ++pf+++ ++    ++l+            ++++p+  + s+ +k+l++  l+++p++R+ + +ll+
  CCD25840.2 225 EKSDIWALGVFLYKLCYYTTPFEKTGEN----AILHA-----------SFQFPNFPHYSDRMKSLIRITLNVQPSQRPNIYQLLE 294
                 ***********************33333....35555...........7899****************************99987 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 1.5
                 SSHHHHH CS
     Pkinase 200 ekgkekv 206
                 +++ke++
  CCD25840.2 574 QETKEQI 580
                 2211111 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.0   2.1e-32   9.6e-29       3     258 ..      24     295 ..      22     296 .. 0.85

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 2.1e-32
                  EEEEEEEESSEEEEEEEEET.TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE.......SSSSEEEEEE--TTEBHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg.ekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct.......keepllivteyvkgGdLlkf 91 
                  + k l +G f++V+ ++++  +   ++  V +K +    +  + + l  e++ mk l ++ ++v+++            + ++++++ey++ G L +f
   CCD25840.2  24 IIKYLTSGGFAQVYTAEISPiDPFINSSIVCLKRVIVPDKP-SLNTLRAEVDAMKLLrNNTHVVSYIDSHAakfdtniGSYEVFLLMEYCDRGGLIDF 120
                  568899*************9989999999****99555555.499************99*******9877754544444455**************** PP

                  HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEEETTEEEE-STT....THEETTTSSEE...EETTSSTSGGGGS-HHHHHHS CS
  Pkinase_Tyr  92 LrkkekekltlkdllsfalqvAkGmeyLeskk..lvHrdlaarNvLlsenkvvkisDfG....Lardiekddey...vkkeeaklpvkWmapEslkek 180
                  ++++ +++l+ +++l+++ qv++G++ +++ +  l+Hrd+   NvLl+++ + k++DfG    + r  ++ +e    +++  +++  ++ +pE+++ +
   CCD25840.2 121 MNTRLQNRLHENEILDIMSQVSQGVAAMHALQppLLHRDIKIENVLLTSRGHYKLCDFGsvcgIIRPPTNPQEFtyvQHDIMKNTTAQYRSPEMINLG 218
                  ***************************99876669***********************83322444443332222236666788999**********9 PP

                  E...EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHH CS
  Pkinase_Tyr 181 k...ftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselvek 258
                  k   +++ksD+W+ Gv+l+ ++    +p+++  ++ +   l+++ + ++  + ++++++l++  ++ +p++Rp++ +l+e+
   CCD25840.2 219 KglpINEKSDIWALGVFLYKLCY-YTTPFEKTGENAI---LHASFQFPNFPHYSDRMKSLIRITLNVQPSQRPNIYQLLEE 295
                  9999*****************99.5789998877765...567889999999***********************999876 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     4e-07    0.0018     157     288 .]     145     286 ..     113     286 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 4e-07
  Kinase-like 157 aanLqakg..lvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrgg.ytrknktk......mthkldaWqlGlviyriwc 245
                  +a ++a++  l+h +++ +n+ll  +g  +l +f++          +  e ++   +++ + +  y+  +  +      +  k d W+lG+  y +  
   CCD25840.2 145 VAAMHALQppLLHRDIKIENVLLTSRGHYKLCDFGSVCGIIRPPT-NPQEFTYVQHDIMKNTTAqYRSPEMINlgkglpINEKSDIWALGVFLYKLCY 241
                  455555544499***********************9986654444.77777777777766655557766655511111155677************** PP

  Kinase-like 246 lklPltlateeak..eewkfklckkipekvkaLlkkfLqlsqedR 288
                   + P+++  e+a+   +++f    + ++ +k L++  L+++  +R
   CCD25840.2 242 YTTPFEKTGENAIlhASFQFPNFPHYSDRMKSLIRITLNVQPSQR 286
                  ******99998762267888888899*********9999987766 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.019        84      32     110 ..      64     153 ..      53     155 .. 0.76
   2 ?    8.7   0.1   0.00032       1.5     144     193 ..     133     178 ..     115     182 .. 0.62

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.019
                 S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE.......EEEEEE----EE-SS........HHHHHHHHHHHHHHHHHHCCHHCH.- CS
         APH  32 raaeeirrevallrlLakagvpvPevlagdtddeeigl.......lfalieyvpgrsllr........klsaaqlpellealgeflaalhqvdp 110
                  + +++r+ev+ ++lL+++  +v   ++   +++ +         +f+l+ey++   l +        +l+++++ ++  ++ +  aa+h+++p
  CCD25840.2  64 PSLNTLRAEVDAMKLLRNN-THVVSYID---SHAAKFDtnigsyeVFLLMEYCDRGGLIDfmntrlqnRLHENEILDIMSQVSQGVAAMHALQP 153
                 5678999**********88.44667775...22222225555678********99999998889999989999999999999999999999875 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00032
                 HHHHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC..TTEEEEE--- CS
         APH 144 lleeleeqvlaalaallpgelptvllHgDlhpgNllvdpddgrvtGviDf 193
                 +++++ +qv + +aa  +  l++ llH+D++  N+l++++++    + Df
  CCD25840.2 133 EILDIMSQVSQGVAAMHA--LQPPLLHRDIKIENVLLTSRGHYK--LCDF 178
                 444444444444444444..6777**************665443..5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1586  (0.08846); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:01.46
# Mc/sec: 1290.67
//
Query:       CCD25841.2  [L=689]
Description: hypothetical protein NDAI_0G00650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.4e-98  326.6   0.3    1.2e-97  326.1   0.3    1.2  1  Arb2           Arb2 domain
    5.6e-88  295.4   0.0    7.7e-88  294.9   0.0    1.2  1  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Arb2  Arb2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.1   0.3  1.3e-101   1.2e-97       2     259 .]     440     685 ..     439     685 .. 0.99

  Alignments for each domain:
  == domain 1  score: 326.1 bits;  conditional E-value: 1.3e-101
                 HHHHHHHHHHHHHHHHH--EE---TTSSS----GGCEEE-TTGGG-SCEEEEEEE--EEE--C-TTCS-B-CCC-EEE-TCHHHHHHHHCTT-EEEEEE CS
        Arb2   2 lhdviReaqakkLaekyklvkLpilreklsksfenqvlatpnieeakkllvivHdppellaqpdpvtnklelhnsvlvdsvkkyidWavkqkygviDvn 100
                 l+ +iR++q ++L++++++ +Lpi++++l+   e+++l+++ni+e+++++++vHd+pe++a++d++++++++++s++vds++++i+Wa+++kygviD+n
  CCD25841.2 440 LQSAIRQQQVRNLSKEFNFSELPIYKSELP---EDTILCSSNIYESNTIIICVHDTPEIWAKRDAIQGTIDPSSSIIVDSSLDMIKWAIERKYGVIDIN 535
                 899***************************...89**************************************************************** PP

                 E----.......--SSSS-HHHHHHHHHHHHHHHHHTTTTSSS.SEEEEEEECCHHHHHHHHHHHS--TTTEEEEEEEECTS-------SSSTHHHHHH CS
        Arb2 101 ipkliteeeeeeskeeeeeesaasesqelllylwdnyielfesaekifllGvGdaysgvvkLlserdvrsrvkavinFvaekslravksevdeslsdWY 199
                 ip+         +  e+e++ ++ ++qe+l+ lwdny+++f +++ki+++G+Gdaysg+v+Ll++rd+rs+vkavinFv +k+l+++++ vdesl +WY
  CCD25841.2 536 IPQ---------NLLEQENYYSIITAQEVLINLWDNYLKYFPNVNKIAFVGIGDAYSGIVHLLGHRDTRSVVKAVINFVGQKQLKPLVPLVDESLGEWY 625
                 ***.........568999********************************************************************************* PP

                 HHTEEEEE-TT-CCGTT-..----GGG--EEE-SSSSHHHHHHHCHHHHHHHHHCHT-XX CS
        Arb2 200 kknSlvfvskkhsvWkkeeskkvrkryGrvlrsdkeglnemleehleevtefildkleea 259
                 +knSlvf +k+h +W+++e+kk+rk+yGrvlr+d++g+++++ee++ee+t+fild++ee+
  CCD25841.2 626 FKNSLVFSNKNHIYWGDKENKKPRKKYGRVLRCDTDGISNIMEERFEEATDFILDSFEEW 685
                 **********************************************************98 PP

>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.9   0.0   8.6e-92   7.7e-88       1     306 [.      66     376 ..      66     377 .. 0.93

  Alignments for each domain:
  == domain 1  score: 294.9 bits;  conditional E-value: 8.6e-92
                    SCCGTHHHHHHHHHHHHT.THHHHCCE............EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   1 hpenpkRlsaileslaesvglldelel...........liqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvsp 85 
                    hpe+p+R+ +i++ lae+ gl+++ +l           +i  +eat+ee+l+vHske+l+++es+s+  +++       l+  +     d++++++
     CCD25841.2  66 HPEDPRRIYRIYKILAEN-GLIKDPTLsgiddigdlmlKIPVREATSEEILEVHSKEHLDFIESTSKMNREQL------LKATE---SGDSVYFNS 151
                    89***************8.9999888899999999999*************************9887666654......22223...24679**** PP

                    TCCHHHHHHHHHHHHHHHHHHTTSSSEEEETTSS--TT-BTTB-BTTBSS-HHHHHHHHHHH..CC-SS-EEEEE-SSS--HHHHHHCTT-TTEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  86 ktlkaallavgavleavdavlsgsvkaafvlvrPpgHHakaseasGFClvNnvaiaikylqa..khelkrvailDvDvHhGnGteeafysdpdvlt 179
                    +++  a+l vg+++ea++av++g+vk+a+++vrPpgHHa++++a+GFCl+ nvaia+k++ +    ++++++ilD+D+HhGnGt++afy+d+++l+
     CCD25841.2 152 DSYASAKLPVGGAIEACKAVVEGRVKNALAVVRPPGHHAEPEAAGGFCLFSNVAIAAKNILKnyPESVRKILILDWDIHHGNGTQKAFYDDDRILY 247
                    ************************************************************883344599*************************** PP

                    EEEEE-.CCTSTT..SS--TT---SGGGTTSEEEEEE-T.T-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHH CS
                    xxxxxx.xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 180 lSiHry.egifyP..gtgaledlgegkgkgfnlnvplee.gtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltk 271
                    +S+Hr+  g++yP   +g ++++gegkg+gfn+n+ ++  g+gd+ey+ +fe+i++p+ +ef+Pdl+++saGfDa++gd++g+++++++ y+++t+
     CCD25841.2 248 VSLHRFkMGKYYPgtIHGRYDQTGEGKGEGFNCNITWPVgGVGDAEYMWAFEQIVMPMGREFQPDLVIISAGFDAADGDTIGQCHVTPSCYGHMTH 343
                    ******5599***655699*******************9689****************************************************** PP

                    HHCCCHGS-G.EEEEE-S---HHHHHHHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 272 klaeladkvkkvvllleGGYnlealaravtavlsa 306
                    +l++la+  +++ ++leGGYnl+++a ++ +v ++
     CCD25841.2 344 MLKSLAR--GNMAVVLEGGYNLDSIAISALSVAKI 376
                    ******8..49**************9999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4817.91
//
Query:       CCD25842.2  [L=496]
Description: hypothetical protein NDAI_0G00660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-21   76.1   0.1    2.6e-14   53.3   0.1    2.3  2  Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
  ------ inclusion threshold ------
      0.018   14.1   0.0      0.035   13.2   0.0    1.4  1  RrnaAD           Ribosomal RNA adenine dimethylase
      0.052   13.1   0.0       0.11   12.1   0.0    1.5  1  Methyltransf_15  RNA cap guanine-N2 methyltransferase
      0.083   12.0   0.1       0.18   11.0   0.1    1.5  1  Methyltransf_3   O-methyltransferase


Domain annotation for each model (and alignments):
>> Methyltr_RsmB-F  16S rRNA methyltransferase RsmB/F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.1   5.9e-18   2.6e-14       2     105 ..     236     347 ..     235     362 .. 0.80
   2 !   20.6   0.0   6.3e-08   0.00028     110     158 ..     384     431 ..     371     494 .. 0.73

  Alignments for each domain:
  == domain 1  score: 53.3 bits;  conditional E-value: 5.9e-18
                      HHH---TT-EEEESS-TTSHHHHHHHHHT.......TTTSEEEEEESSCCCHHHHHHHHHHTT--.SEEEEES-CTCCHHHHCC..EEEEEEEE CS
  Methyltr_RsmB-F   2 llLapqeeetilDlcaaPGgKTthiaelm.......knkgtvvAvdankeRlkrvaenlkrLgvt.ntivleaDarkidkvlggelfDriLlDa 87 
                       +L+p +++ i+D+caaPG KTth+a  m       +++ +++A +++ eR+k +++ +k  g+  n++v+ +D +k  +    + +   ++D 
       CCD25842.2 236 HILNPSKDDIIIDACAAPGNKTTHVASYMfgdakqeDPHVQIYAFEKDPERAKILEKMIKVAGCSkNIQVTVGDFTKAATPDKFKDVTGFIVDP 329
                      68************************987444332234568**********************98799*******998554444668889**** PP

                      --CCGGGTTT-TCHHHH- CS
  Methyltr_RsmB-F  88 PCsgtgvirrdpdvklrr 105
                       Csg g+  r+    l+r
       CCD25842.2 330 SCSGSGIFGRKYVDSLNR 347
                      *******99975444444 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 6.3e-08
                      HHHHHHHHHHHHHHHCCCEEEEEEEEEEES--STTTTHHHHHHHHHH-T CS
  Methyltr_RsmB-F 110 iaqlaklqkellsaaidllkkgGvlvYsTCsvlveEneevieeaLkkre 158
                      +a+l++ q ++++ a+    +   +vYsTCs++ eEne v+ ++L + +
       CCD25842.2 384 LAKLSSFQFQVIKHAMSF-PTAKKIVYSTCSIHAEENERVVLDLLLDSK 431
                      556666677777766643.455689****************99887653 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   7.7e-06     0.035      26      95 ..     238     320 ..     235     353 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.7e-06
                 H-GGTTSEEEEES-TTTCCHHHHHCC-..........SEEEEE-S-HHHHHHHHCHTT...TCCCEEEE-S-CCGHHHHHHHC CS
      RrnaAD  26 lnleekltvleigpGkGilTeeLakra..........kqvvvlElderLakllqkkls...kdeklkvvhqDflkfetpeevt 95 
                 ln+++++ +++  + +G+ T+++a ++           q  ++E+d++ ak+l+k ++    +++++v   Df k++tp +  
  CCD25842.2 238 LNPSKDDIIIDACAAPGNKTTHVASYMfgdakqedphVQIYAFEKDPERAKILEKMIKvagCSKNIQVTVGDFTKAATPDKFK 320
                 7999********************9999998655333345689************99999999****************9654 PP

>> Methyltransf_15  RNA cap guanine-N2 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.4e-05      0.11       3      70 ..     245     322 ..     243     357 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.4e-05
  Methyltransf_15   3 vilDlfsGaGGnviqfalv..........fekviaieinleklacaqhNaevYgvsdkitlvlgdvfellaklkleki 70 
                      +i+D+++  G ++ + a +          + +++a e+++e+ ++ ++  +v g s++i++ +gd++++    k++ +
       CCD25842.2 245 IIIDACAAPGNKTTHVASYmfgdakqedpHVQIYAFEKDPERAKILEKMIKVAGCSKNIQVTVGDFTKAATPDKFKDV 322
                      57777777777777777777777776777779***********************************98877777666 PP

>> Methyltransf_3  O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.9e-05      0.18      72     110 ..     274     312 ..     263     322 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 3.9e-05
                     T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHH CS
  Methyltransf_3  72 DGkilaididreayeialkfiqkagvaekieliegdalk 110
                       +i a ++d+e ++i  k+i+ ag  + i++ +gd +k
      CCD25842.2 274 HVQIYAFEKDPERAKILEKMIKVAGCSKNIQVTVGDFTK 312
                     46899******************************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1080  (0.0602376); expected 358.6 (0.02)
Passed bias filter:                      643  (0.0358637); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3435.23
//
Query:       CCD25843.2  [L=968]
Description: hypothetical protein NDAI_0G00670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-20   72.2   0.1    5.2e-20   71.2   0.1    1.6  1  R3H       R3H domain
    1.2e-10   41.3  55.8    3.9e-06   26.8  15.7   11.5 10  zf-NF-X1  NF-X1 type zinc finger


Domain annotation for each model (and alignments):
>> R3H  R3H domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.1   5.7e-24   5.2e-20       1      60 []     744     804 ..     744     804 .. 0.94

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 5.7e-24
                 HHHHHHHHHHHHHHH-S.--EEE-----SHHHHHHHHHHHHSSEEEEEE--SS-SEEEEEE CS
         R3H   1 efllrvekklaefvkdt.grslefppmssyeRriiHelaeaygleseSvGeepkRrvvvtk 60 
                 ++++++e+++ +f++d+ + sl+f+pm +++R +iHel +ay+l+ eS++ epkR+v ++k
  CCD25843.2 744 RWCQQIEEIINKFMDDKsRPSLHFKPMRPPQRHFIHELSKAYNLYCESQDPEPKRSVFIKK 804
                 59************886367**************************************987 PP

>> zf-NF-X1  NF-X1 type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3  14.4       1.2   1.1e+04       3      18 ..     168     183 ..     158     184 .. 0.78
   2 ?   -1.4   1.2       0.3   2.7e+03       1       5 [.     193     197 ..     193     197 .. 0.95
   3 !   23.3  13.5   5.3e-09   4.7e-05       1      19 []     226     244 ..     226     244 .. 0.98
   4 !   21.2  10.6   2.4e-08   0.00022       1      18 [.     372     390 ..     372     391 .. 0.93
   5 ?    0.9   6.8     0.054   4.8e+02       1      13 [.     427     439 ..     427     440 .. 0.89
   6 !   26.8  15.7   4.4e-10   3.9e-06       1      18 [.     478     495 ..     478     496 .. 0.98
   7 ?   -4.8   1.4         2   1.8e+04      16      19 .]     523     526 ..     518     526 .. 0.63
   8 ?   -5.6  10.9         2   1.8e+04       9      19 .]     547     559 ..     539     559 .. 0.83
   9 !    8.3  12.3   0.00026       2.4       3      19 .]     597     615 ..     585     618 .. 0.80
  10 !    6.3  11.8    0.0011       9.8       1      19 []     618     645 ..     618     645 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.2
    zf-NF-X1   3 rHkCeklCHeGpCppC 18 
                  H C  +CH Gp p C
  CCD25843.2 168 VHGCTNICHLGPHPEC 183
                 7***********8888 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.3
    zf-NF-X1   1 CGrHk 5  
                 CG+H+
  CCD25843.2 193 CGKHT 197
                 ****8 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 5.3e-09
    zf-NF-X1   1 CGrHkCeklCHeGpCppCp 19 
                 CG+HkC+++CH+G C++Cp
  CCD25843.2 226 CGIHKCKRKCHSGLCGVCP 244
                 ******************7 PP

  == domain 4  score: 21.2 bits;  conditional E-value: 2.4e-08
    zf-NF-X1   1 CGrHkCeklCHeGpC.ppC 18 
                 CG+HkC  +CH+G+C +pC
  CCD25843.2 372 CGKHKCPFKCHTGACmDPC 390
                 ***************55** PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.054
    zf-NF-X1   1 CGrHkCeklCHeG 13 
                 C rH+C + C++G
  CCD25843.2 427 CRRHRCLERCCSG 439
                 669********99 PP

  == domain 6  score: 26.8 bits;  conditional E-value: 4.4e-10
    zf-NF-X1   1 CGrHkCeklCHeGpCppC 18 
                 CG+H+C+++CH+G CppC
  CCD25843.2 478 CGIHRCQRKCHPGKCPPC 495
                 ****************** PP

  == domain 7  score: -4.8 bits;  conditional E-value: 2
    zf-NF-X1  16 ppCp 19 
                 ppCp
  CCD25843.2 523 PPCP 526
                 7886 PP

  == domain 8  score: -5.6 bits;  conditional E-value: 2
    zf-NF-X1   9 lCH..eGpCppCp 19 
                 +CH  + pCppC+
  CCD25843.2 547 TCHplDEPCPPCT 559
                 6887778*****5 PP

  == domain 9  score: 8.3 bits;  conditional E-value: 0.00026
    zf-NF-X1   3 rHkCeklCH.eGpCp.pCp 19 
                  HkC k CH +G+C+  C+
  CCD25843.2 597 PHKCMKRCHiPGDCQtKCK 615
                 6*************87775 PP

  == domain 10  score: 6.3 bits;  conditional E-value: 0.0011
    zf-NF-X1   1 CG......rHkCeklCH.eGpCp..pCp 19 
                 CG       H+C+++CH   +Cp  pC+
  CCD25843.2 618 CGkrrincDHTCSRPCHgNTECPdvPCT 645
                 666666558********99***999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (968 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1026  (0.0572257); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.30s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 6670.19
//
Query:       CCD25844.2  [L=255]
Description: hypothetical protein NDAI_0G00680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-51  174.3   1.6    6.9e-50  169.2   1.6    2.0  1  Methyltransf_16  Lysine methyltransferase
  ------ inclusion threshold ------
      0.094   12.3   0.0       0.17   11.5   0.0    1.3  1  MTS              Methyltransferase small domain


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.2   1.6   7.6e-54   6.9e-50       5     173 ..      34     226 ..      31     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 169.2 bits;  conditional E-value: 7.6e-54
  Methyltransf_16   5 keLkieedtge.sigrkvWdaavvlvkylekklake.....lganelsklsvlELGsGtGlvGlavael.....lpeakviltDleellellkk 87 
                      + Lki+ed+ge ++g+kvW a+ +l++++++k++++       +n+ + ++++ELGsGtGlvGl++ +l      ++++ ++tD++++++l+k+
       CCD25844.2  34 NPLKIHEDGGEsGCGGKVWIAGELLCEFILEKSNSDdllngWASNSKQFRKIVELGSGTGLVGLCIGLLeknnfHKDIDAYITDIDQIVPLMKQ 127
                      459********9********************99999*9997899999*******************9999985599***************** PP

  Methyltransf_16  88 nielnknalkskvkvevLdWgeel.............eedllekeevDlilaaDcvYledslelLvkvLkellkkesk..vlvaykkrreaekk 166
                      ni+ln+  ++++v++e+L+Wge+l             eed+ e+++vDlilaaDcvYle++++lL+k+L +l++ e+   +l+ay+krr+a+k+
       CCD25844.2 128 NIQLNG--IENEVSAEELWWGEPLrktfapsehsrdkEEDFREEKKVDLILAADCVYLEKAFPLLEKTLLDLTEGETPptILMAYRKRRKADKH 219
                      ****66..*************9883333322222222467778899*****************************98788************** PP

  Methyltransf_16 167 Ffkllek 173
                      Ff++++k
       CCD25844.2 220 FFQKIKK 226
                      *****98 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.8e-05      0.17      31      88 ..      81     142 ..      68     149 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 1.8e-05
                 TCSEEEEET-TTSHHHHHHH...HHT..TC.EEEEEESBHHHHHHHHHHHHHTTGCEEEEE-S CS
         MTS  31 lsgkvlDlGcGaGvlgaala...kes..peaevtlvdvdarAlesakenleanklevevvasd 88 
                 + +k++ lG+G+G++g+ +    k++  ++++  ++d+d + + + k+n++ n++e ev a++
  CCD25844.2  81 QFRKIVELGSGTGLVGLCIGlleKNNfhKDIDAYITDID-QIVPLMKQNIQLNGIENEVSAEE 142
                 6789************97641113331033445556666.468999********998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       627  (0.0349713); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1846.66
//
Query:       CCD25845.2  [L=72]
Description: hypothetical protein NDAI_0G00690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-18   64.4   0.2    7.4e-18   64.1   0.2    1.2  1  DUF1242   Protein of unknown function (DUF1242)
  ------ inclusion threshold ------
       0.05   13.1   0.0      0.068   12.7   0.0    1.2  1  Tim29     Translocase of the Inner Mitochondrial membrane 29


Domain annotation for each model (and alignments):
>> DUF1242  Protein of unknown function (DUF1242)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.2   8.2e-22   7.4e-18       1      35 []      10      45 ..      10      45 .. 0.99

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 8.2e-22
     DUF1242  1 LltVlLLlICTCTYvravfPslldrnk.sgfrGvfW 35
                Ll+V+LLlIC CTYv++++Ps+ldr+k +g +G+fW
  CCD25845.2 10 LLQVILLLICSCTYVHSQWPSILDRYKdHGALGAFW 45
                8*********************************** PP

>> Tim29  Translocase of the Inner Mitochondrial membrane 29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   7.6e-06     0.068     131     160 ..      20      49 ..      12      52 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 7.6e-06
       Tim29 131 qckylkprwlelpervvDvGflgkwwvLek 160
                  c+y++ +w ++ +r  D G lg +w++ +
  CCD25845.2  20 SCTYVHSQWPSILDRYKDHGALGAFWKMAR 49 
                 7*************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 523.11
//
Query:       CCD25846.2  [L=444]
Description: hypothetical protein NDAI_0G00700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.6e-15   55.5   0.9      1e-14   54.3   0.4    1.8  2  Cyclin_N    Cyclin, N-terminal domain
    5.1e-07   30.0   0.1    1.2e-06   28.8   0.1    1.7  1  Cyclin_C_2  Cyclin C-terminal domain
     0.0021   18.1   2.2       0.47   10.5   0.0    3.4  3  Cyclin_C    Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.4   1.7e-18     1e-14      14     126 ..     174     289 ..     160     290 .. 0.83
   2 ?   -2.2   0.0      0.55   3.3e+03      16      16 ..     364     364 ..     339     404 .. 0.53

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 1.7e-18
                 S-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHHHHTTT......SS CS
    Cyclin_N  14 lpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlvyitde......af 106
                 + +++ l+  +  + + R  ++  ++++ +++++++  l++a++yl Rfl k sv++ +l l+++t ++lA+Kvee+ p  ++ lv  + +        
  CCD25846.2 174 PITHRDLHYDK--DYNLRIYCYFLIMKLGRRLNIRQCALATAHVYLSRFLLKVSVREVNLYLLATTTVYLACKVEEC-PQYIRTLVSEARSlwpefvPP 269
                 44444443333..347999999******************************************************9.9**********5555546678 PP

                 -HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N 107 teeeilemErliLetLnfdl 126
                 + ++++e+E ++Le+L+ +l
  CCD25846.2 270 DPTKVTEFEFYLLEELESYL 289
                 999*************9776 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.55
                 S CS
    Cyclin_N  16 k 16 
                 +
  CCD25846.2 364 S 364
                 2 PP

>> Cyclin_C_2  Cyclin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1     2e-10   1.2e-06       1      97 [.     293     410 ..     293     417 .. 0.71

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 2e-10
  Cyclin_C_2   1 hPfRpLeGflldLkalgkslekriekaykrareilkssalltDayflytPsqIalaallladeklaerYleeklgkeesseks................ 83 
                 hP+R Le+++  Lk+ + +l+ + e++ ++++ +++ ++++tDa ++y+P  Ia+a+l+++ +  +++  +++  ++ +++++                
  CCD25846.2 293 HPYRSLEQIVNVLKQEPYQLNINAEEL-QNCWSLIN-DSYITDANLIYPPHIIAIASLFITISMKKNEHSRSSSRNNITTNDEnqndkvsssshshrqe 389
                 9***************99999676666.6899****.*********************88777776555555555422222112234566666666666 PP

  Cyclin_C_2  84 .......aksellekllktie 97 
                        +  ++le++++ti+
  CCD25846.2 390 ilnlfiaESLIDLEEVMDTIQ 410
                 666665522233555555555 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.27   1.6e+03      59      81 ..      91     113 ..      80     147 .. 0.80
   2 !    5.2   0.1    0.0036        22      46      92 ..     209     258 ..     183     265 .. 0.81
   3 !   10.5   0.0   7.9e-05      0.47      27      65 ..     324     361 ..     298     391 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.27
                 HHS--S-HHHHHHC---HHHHHH CS
    Cyclin_C  59 lnspewtetlehytgyskedlkp 81 
                 ++   wt+t  h  +y+k+ l +
  CCD25846.2  91 MSGTYWTSTQRHSWQYTKSSLAK 113
                 35556999999999999998865 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0036
                 HHHHHHHHHCCHHH..HS--S-HHHHHHC.---HHHHHHHHHHHHHHHHH CS
    Cyclin_C  46 liAaaalllarstl..nspewtetlehyt.gyskedlkpcvelilellss 92 
                  +A+a ++l+r  l  +  e +  l   t  y  +++++c + i  l+s+
  CCD25846.2 209 ALATAHVYLSRFLLkvSVREVNLYLLATTtVYLACKVEECPQYIRTLVSE 258
                 68999999999999887777887777777688999999999998888854 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 7.9e-05
                 HCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S- CS
    Cyclin_C  27 kylleltlldydflsyppSliAaaalllarstlnspewt 65 
                 + + ++ ++d++++ ypp +iA a+l++++s+ ++++  
  CCD25846.2 324 SLINDSYITDANLI-YPPHIIAIASLFITISMKKNEHSR 361
                 44455566666665.*****************8444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1168  (0.0651459); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3075.55
//
Query:       CCD25847.2  [L=491]
Description: hypothetical protein NDAI_0G00710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-38  132.8  13.9    2.4e-38  132.4  13.9    1.2  1  Bac_surface_Ag  Surface antigen


Domain annotation for each model (and alignments):
>> Bac_surface_Ag  Surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4  13.9   1.4e-42   2.4e-38       1     324 []     141     490 ..     141     490 .. 0.88

  Alignments for each domain:
  == domain 1  score: 132.4 bits;  conditional E-value: 1.4e-42
                     STSSSS-EEEEEEEESS.SEEEEEEEEEESTSSTT..S-EEEEEEEEEEGGGTBS.S-EEEEEEEEEEEEEE......ESSSEEEEEEEEEEEEE CS
  Bac_surface_Ag   1 NllGtGqslslsaslgs.yeqslnlsftePyflgd..rvslglslfaresdsdesdsyrtksvgfsvslgrp......ltenyslslglsvqknk 86 
                     N++G+G+sl++++ +g+  ++s+ l++++  + ++   ++++++lf + s+ +++  ++ + +g++ s+  +      +t++ ++ +++++  ++
      CCD25847.2 141 NMFGNGESLKFNIMKGTkIQSSYLLNYSSLLLPNKtpFWNMNIDLFKNVSQLGQNLPLELDMLGGKFSIRSSfitpsrHTPDKRGLWNYEFFMQS 235
                     99**************999*********9955554338999999999997777777777777666666665554668888999999****99999 PP

                     EES---BHHHHHHHHSCS--EEEEEEEEEEEEEEEEEESSSS.....S-SSEEEEEEEEEEE-..TTSSS-......EEEEEEEEEEEEESSTTS CS
  Bac_surface_Ag  87 ilkdsssennrnvssasklqtgksltsslslslsydtrddal.....fPtrGvllklrleftgpllggdvs......ylkldakasyyvpltkek 170
                     +    ++ + +n+s+    qtg+++++sl+ ++++d+r++++     fP++G l+k+ +e++   +g+ +s      ++k + ++++  ++  ++
      CCD25847.2 236 VIRSCGNTSLNNTSNSLLFQTGEDWKNSLGSNFVWDSRNNSVldpnaFPSNGQLFKWFNELNF--IGNRSStanggpFWKNQLEFTQIRSWLPND 328
                     999999998888888899*********************9653333489*************8..777776777888****************** PP

                     SSEEEEEEEEEEEEESS........SS-.--GGG-B-BSSTTSSTEE-TT-BS-EEEEEEE--BSEEEEEEEEEEEE-SSS-.GGTTEEEEEEEE CS
  Bac_surface_Ag 171 dlvlaarvalgyisgyg........tkdelpfyerFyaGGsnsvRGfesgglgprdesgdalGGdsyavaslElrfplpflk.kqnsvrlalFfD 256
                     +++++ ++++gyi+++         ++  l+++++F+ GG n +R+f++ glgp+d+  +++GGd++++ ++ +  +lp  + +++ +rl++F +
      CCD25847.2 329 FITMNCTFRTGYIKQLLtknevqkgSSSFLHISDKFQNGGPNDIRSFQTMGLGPKDI-FNSIGGDAFVSYGISIFSKLPIKDwSKSNFRLHWFLN 422
                     **************877799999996667***************************9.**********************9964444******** PP

                     EEEEE-TT--TTTTTTS--TTTS-EEEEEEEEEEEETTEEEEEEEEEEEE-STT--EE.SEEEEECEEE CS
  Bac_surface_Ag 257 aGnvwdkegqspsssrsasstaeirasvGvgLrwqsPlGPlrfdyAiplkkedgdktq.rFqFgiGttF 324
                      G++ +++g s +++ +   + ++ +s+Gvg+ +++P++++++++ +pl+ ++gd  + +FqFg+G +F
      CCD25847.2 423 GGKLINHNGMSINNCFTDL-SRQHSISTGVGILLRHPMARFELNFSVPLTIHQGDDVRkGFQFGVGLSF 490
                     *********9999886444.47********************************88888*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3458.23
//
Query:       CCD25848.2  [L=708]
Description: hypothetical protein NDAI_0G00720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-13   49.1  12.7    7.6e-07   29.3   1.7    3.7  3  zf-C2H2          Zinc finger, C2H2 type
    1.3e-09   38.1  10.4    0.00015   22.3   0.9    3.6  3  zf-C2H2_4        C2H2-type zinc finger
    5.6e-09   36.0  13.1    9.1e-07   29.0   1.0    4.1  4  zf-H2C2_2        Zinc-finger double domain
    6.9e-09   35.8   4.8    7.4e-06   26.2   0.5    3.1  3  zf-met           Zinc-finger of C2H2 type
    9.1e-09   35.4   7.9    0.00035   20.8   0.2    3.6  3  zf-C2H2_jaz      Zinc-finger double-stranded RNA-binding
    1.4e-06   28.1   7.9     0.0024   17.8   0.4    3.4  3  zf-C2H2_6        C2H2-type zinc finger
     0.0055   17.2   2.8     0.0055   17.2   2.8    2.8  3  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
  ------ inclusion threshold ------
      0.081   12.5   7.0       0.47   10.1   0.3    3.3  3  zf_UBZ           Ubiquitin-Binding Zinc Finger
       0.21   11.7   7.8       0.84    9.7   0.7    3.3  3  zf-BED           BED zinc finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   1.7   3.8e-10   7.6e-07       1      23 []     580     602 ..     580     602 .. 0.98
   2 !   15.6   1.5     8e-06     0.016       1      23 []     608     630 ..     608     630 .. 0.93
   3 !    9.6   0.0   0.00067       1.3       5      21 ..     649     665 ..     636     666 .. 0.86

  Alignments for each domain:
  == domain 1  score: 29.3 bits;  conditional E-value: 3.8e-10
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y C+ C+k+F+r++nLk+H+rtH
  CCD25848.2 580 YICELCNKTFTRPYNLKSHLRTH 602
                 89********************9 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 8e-06
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 + C++C+k F r+++ krH   H
  CCD25848.2 608 FICKICNKAFARQHDRKRHEDLH 630
                 78*****************8777 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00067
                 TTTEEESSHHHHHHHHH CS
     zf-C2H2   5 dCgksFkrksnLkrHir 21 
                 +Cgk+F r++ L rH +
  CCD25848.2 649 GCGKKFARSDALGRHFK 665
                 7**************77 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.9   7.4e-08   0.00015       1      23 [.     580     602 ..     580     603 .. 0.97
   2 !   11.3   1.0   0.00026      0.52       1      23 [.     608     630 ..     608     631 .. 0.90
   3 !    8.8   0.0    0.0016       3.3       6      22 ..     650     666 ..     648     668 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.3 bits;  conditional E-value: 7.4e-08
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 ++C++C+k+F+++++L++Hl+th
  CCD25848.2 580 YICELCNKTFTRPYNLKSHLRTH 602
                 89********************9 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00026
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f+C+iC+k F ++++ +rH   h
  CCD25848.2 608 FICKICNKAFARQHDRKRHEDLH 630
                 89*************88898766 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0016
   zf-C2H2_4   6 CgksFsskkaLlrHlkt 22 
                 Cgk F +++aL rH+kt
  CCD25848.2 650 CGKKFARSDALGRHFKT 666
                 ***************98 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0084        17      17      26 .]     582     591 ..     573     591 .. 0.91
   2 !   29.0   1.0   4.6e-10   9.1e-07       1      25 [.     594     618 ..     594     619 .. 0.96
   3 !    6.7   1.2    0.0053        11       3      17 ..     624     638 ..     622     656 .. 0.77
   4 ?   -2.2   0.0       3.5     7e+03       4      13 ..     662     671 ..     659     675 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0084
   zf-H2C2_2  17 CplCdkaFkt 26 
                 C+lC+k+F++
  CCD25848.2 582 CELCNKTFTR 591
                 ********85 PP

  == domain 2  score: 29.0 bits;  conditional E-value: 4.6e-10
   zf-H2C2_2   1 nLrrHirkHtgekpyeCplCdkaFk 25 
                 nL+ H+r+Ht+ekp+ C+ C+kaF+
  CCD25848.2 594 NLKSHLRTHTNEKPFICKICNKAFA 618
                 89**********************8 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0053
   zf-H2C2_2   3 rrHirkHtgekpyeC 17 
                 +rH   Htg+k+y C
  CCD25848.2 624 KRHEDLHTGKKRYIC 638
                 79**********955 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 3.5
   zf-H2C2_2   4 rHirkHtgek 13 
                 rH+++  g+k
  CCD25848.2 662 RHFKTESGKK 671
                 9**9999987 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.5   3.7e-09   7.4e-06       1      23 [.     580     602 ..     580     604 .. 0.92
   2 !   10.5   0.2   0.00033      0.66       1      19 [.     608     626 ..     608     628 .. 0.90
   3 ?   -2.9   0.0       5.1     1e+04       6      20 ..     650     664 ..     650     665 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.2 bits;  conditional E-value: 3.7e-09
      zf-met   1 fyCelCnvtfnsesqlksHlqGK 23 
                 + CelCn+tf+ + +lksHl+ +
  CCD25848.2 580 YICELCNKTFTRPYNLKSHLRTH 602
                 78******************965 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00033
      zf-met   1 fyCelCnvtfnsesqlksH 19 
                 f C++Cn+ f  + + k H
  CCD25848.2 608 FICKICNKAFARQHDRKRH 626
                 78*********99999988 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 5.1
      zf-met   6 CnvtfnsesqlksHl 20 
                 C ++f    +l  H+
  CCD25848.2 650 CGKKFARSDALGRHF 664
                 999999998888886 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   1.8e-07   0.00035       2      24 ..     580     602 ..     579     602 .. 0.94
   2 !   14.3   0.6   1.8e-05     0.037       2      21 ..     608     627 ..     607     628 .. 0.94
   3 ?    3.0   0.1     0.064   1.3e+02       7      23 ..     650     666 ..     650     671 .. 0.90

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.8e-07
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  + C+lC+K+F   ++l+ Hl+++
   CCD25848.2 580 YICELCNKTFTRPYNLKSHLRTH 602
                  89******************986 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.8e-05
                  CBBTTTTBBBSSHHHHHCCT CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHl 21 
                  f C++C+K F  +++ + H+
   CCD25848.2 608 FICKICNKAFARQHDRKRHE 627
                  99*****************7 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.064
                  TTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkS 23 
                  C K F  + al  H+k+
   CCD25848.2 650 CGKKFARSDALGRHFKT 666
                  99*************98 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   1.2e-06    0.0024       2      24 ..     580     602 ..     580     605 .. 0.97
   2 !    9.6   0.2   0.00046      0.92       2      14 ..     608     620 ..     608     622 .. 0.89
   3 ?    3.9   0.1     0.027        54       7      20 ..     650     663 ..     650     666 .. 0.92

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.2e-06
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksH 24 
                 ++C  C+k+F   ++L  H+++H
  CCD25848.2 580 YICELCNKTFTRPYNLKSHLRTH 602
                 89********************* PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00046
   zf-C2H2_6   2 heCsvCsksFpsl 14 
                 ++C++C+k F  +
  CCD25848.2 608 FICKICNKAFARQ 620
                 89********875 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.027
   zf-C2H2_6   7 CsksFpslqaLggH 20 
                 C+k F   +aLg H
  CCD25848.2 650 CGKKFARSDALGRH 663
                 ************99 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.3       7.5   1.5e+04      16      28 ..     483     497 ..     469     503 .. 0.64
   2 ?   -0.1   0.2       0.7   1.4e+03       7      17 ..     581     591 ..     567     607 .. 0.63
   3 !   17.2   2.8   2.8e-06    0.0055       7      53 ..     609     664 ..     608     667 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.5
  Zn_ribbon_recom  16 trrkrkgkr..hyYr 28 
                      +r++++++r  +yY 
       CCD25848.2 483 SRSRSRSRRssIYYS 497
                      444444444567775 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.7
  Zn_ribbon_recom   7 rCgeCGspmtr 17 
                      +C  C++++tr
       CCD25848.2 581 ICELCNKTFTR 591
                      56666666666 PP

  == domain 3  score: 17.2 bits;  conditional E-value: 2.8e-06
  Zn_ribbon_recom   7 rCgeCGspmtrrkrkgkr.......hyYrCstyrrkgk..kCsnhsireekleeav 53 
                      +C+ C++++ r++ +++         +Y+C+++ ++g   +C ++  r ++l +++
       CCD25848.2 609 ICKICNKAFARQHDRKRHedlhtgkKRYICGGKLKNGDtwGCGKKFARSDALGRHF 664
                      7********9954332223355555************9666****99999987766 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0091        18       2      20 ..     579     598 ..     578     599 .. 0.84
   2 ?   10.1   0.3   0.00023      0.47       3      24 ..     608     630 ..     606     633 .. 0.95
   3 ?   -2.0   0.7       1.5   2.9e+03      12      22 ..     681     692 ..     679     694 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0091
      zf_UBZ   2 tylCerCgkeipes.elqEH 20 
                  y+Ce C+k++  +  l +H
  CCD25848.2 579 GYICELCNKTFTRPyNLKSH 598
                 69********9988777777 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00023
      zf_UBZ   3 ylCerCgkeipes.elqEHeDwH 24 
                 ++C+ C+k +    ++  HeD H
  CCD25848.2 608 FICKICNKAFARQhDRKRHEDLH 630
                 89**********99*******99 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.5
      zf_UBZ  12 ipes.elqEHeD 22 
                 i+e  ++ +H+D
  CCD25848.2 681 ISEQeQQGSHDD 692
                 55665999***9 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.7   0.00042      0.84      17      41 ..     580     601 ..     572     604 .. 0.85
   2 ?    4.5   0.7     0.018        35      15      29 ..     606     620 ..     601     626 .. 0.82
   3 ?   -3.0   0.0       3.9   7.7e+03      22      29 ..     650     657 ..     650     666 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00042
                 -EETTTTEE----SSTHHHHHHHHH CS
      zf-BED  17 avCryCgkilsrgggttnLkrHLrr 41 
                  +C  C+k+++r     nLk+HLr+
  CCD25848.2 580 YICELCNKTFTR---PYNLKSHLRT 601
                 68**********...5999999975 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.018
                 S--EETTTTEE---- CS
      zf-BED  15 qkavCryCgkilsrg 29 
                 +  +C++C+k ++r 
  CCD25848.2 606 KPFICKICNKAFARQ 620
                 5679*******9996 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.9
                 TTEE---- CS
      zf-BED  22 Cgkilsrg 29 
                 Cgk+++r+
  CCD25848.2 650 CGKKFARS 657
                 99*99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (708 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1394  (0.0777511); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 4572.86
//
Query:       CCD25849.2  [L=418]
Description: hypothetical protein NDAI_0G00730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-10   40.8   0.0      3e-10   40.2   0.0    1.3  1  Met_10           Met-10+ like-protein
     0.0038   17.0   0.0     0.0074   16.1   0.0    1.5  1  Methyltransf_31  Methyltransferase domain
  ------ inclusion threshold ------
       0.04   13.5   0.0      0.069   12.7   0.0    1.3  1  MTS              Methyltransferase small domain
      0.041   13.3   0.0      0.065   12.6   0.0    1.3  1  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.069   13.1   0.0       0.11   12.5   0.0    1.3  1  Methyltransf_32  Methyltransferase domain
      0.094   13.4   0.0       0.23   12.2   0.0    1.7  1  Methyltransf_25  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Met_10  Met-10+ like-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0     1e-13     3e-10      65     152 ..     200     289 ..     166     364 .. 0.81

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1e-13
                 EEEEETTEEEEEETTTS---GGGHHHHHHHHTT--...TT-EEEETT-TTTCCHHHCCHHTTSSEEEEEES-HHHHHHHHHHHHHTT-TTC CS
      Met_10  65 tihkEngcrfklDvskvyfsskleaErerlaklve...egevVvdvfAGiGpfaipiakyskakrvlaidlnPesvkylkeniklNkvekv 152
                  + k ng+         +fs+++++E++r+  +++   ++  Vvd++ GiG+f+ +   +  a+ v++ d+nP s+k l+e ++lNk   +
  CCD25849.2 200 CQLKQNGIWQVWNPLYTMFSRGNIKEKKRILDTFHgscKDIDVVDLYCGIGYFSFSYL-FNGARNVFGFDINPWSIKGLQEGLRLNKFGPT 289
                 55677777777777889***************98622234569*************98.689999**********************8765 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.5e-06    0.0074       3      62 ..     238     297 ..     236     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 2.5e-06
  Methyltransf_31   3 kglrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielAre..naqklgldnveFeqgd 62 
                      k++ v+Dl CG G+++f      +   +v+G+Di++ +i+  +e  ++ k g ++++F  ++
       CCD25849.2 238 KDIDVVDLYCGIGYFSFSYL--FNGARNVFGFDINPWSIKGLQEglRLNKFGPTRCHFYNES 297
                      6889*************988..677777***************9777777888899998755 PP

>> MTS  Methyltransferase small domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.3e-05     0.069      10      85 ..     217     292 ..     212     306 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.3e-05
                 STTTTS--HHHHHHHHHCHCC.TCSEEEEET-TTSHHHHHHHHHTTC.EEEEEESBHHHHHHHHHHHHHTTGC.EEEE CS
         MTS  10 vFskdklDkGsklLletlpke.lsgkvlDlGcGaGvlgaalakespeaevtlvdvdarAlesakenleankle.vevv 85 
                 +Fs++++    ++ l+t++ + ++ +v+Dl cG+G+ + + + +  + +v  +d++  +++  +e l+ nk+  ++++
  CCD25849.2 217 MFSRGNIKEKKRI-LDTFHGScKDIDVVDLYCGIGYFSFSYLFNGAR-NVFGFDINPWSIKGLQEGLRLNKFGpTRCH 292
                 5666666555444.566666657778*************99876655.8********************998764443 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.2e-05     0.065     163     218 ..     240     296 ..     228     309 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.2e-05
        PrmA 163 eevlDvGtGSGiLaiaaakLgakkvvavDiDevAvkvakeNaelNkvea.klevals 218
                   v+D+ +G G  +   +  ga++v++ Di++ ++k  +e ++lNk    +++ +++
  CCD25849.2 240 IDVVDLYCGIGYFSFSYLFNGARNVFGFDINPWSIKGLQEGLRLNKFGPtRCHFYNE 296
                 479******************************************987756655554 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.6e-05      0.11      16      94 ..     229     303 ..     223     369 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 3.6e-05
  Methyltransf_32  16 llkelakesgaltvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekraeklgkkfnkrlsfaelsieeats 94 
                      +l++++ ++++++vvD+ +G gY sf   +   +   +v+g+d++   ++  ++   +l+k   +r++f + s+e +++
       CCD25849.2 229 ILDTFHGSCKDIDVVDLYCGIGYFSFSYLF---NGARNVFGFDINPWSIKGLQE-GLRLNKFGPTRCHFYNESNEMSIE 303
                      55666778999*****************99...66889******9988765554.344444445677777666666655 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.8e-05      0.23       1      51 [.     242     294 ..     242     309 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 7.8e-05
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTT...TEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeegl...nvefv 51 
                      v+dl cG G +++  + + g+ +v g+Di++  ++  +e ++ +++   +++f+
       CCD25849.2 242 VVDLYCGIGYFSFSYLFN-GARNVFGFDINPWSIKGLQEGLRLNKFgptRCHFY 294
                      89************9977.69*************99998887665555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       580  (0.0323498); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3333.20
//
Query:       CCD25850.2  [L=546]
Description: hypothetical protein NDAI_0G00740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-84  283.0  26.1    4.8e-53  180.5  13.6    2.1  2  Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase


Domain annotation for each model (and alignments):
>> Glyco_transf_15  Glycolipid 2-alpha-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.5  13.6   2.7e-57   4.8e-53      56     245 ..      78     280 ..      35     304 .. 0.84
   2 !  108.4   4.6   2.3e-35   4.2e-31     208     324 ..     324     442 ..     319     443 .. 0.92

  Alignments for each domain:
  == domain 1  score: 180.5 bits;  conditional E-value: 2.7e-57
  Glyco_transf_15  56 e.......nAtllalvrnselakilrsikkvekrFnkkfnYpyvfindepftekfkekieklvee...advefgeipkeewsyPefideekaak 139
                      e       nAt+++l rn+el+++l++i+++e++Fn+ f+Ypyvf+ndepft++f  ki+++++     +v fg++ + ew++ + + e+ +  
       CCD25850.2  78 EnptyykmNATFVMLTRNEELNDVLKTIRSIESHFNQWFHYPYVFLNDEPFTQEFMDKIRSVTTTmndDEVYFGQLNELEWEFAQDVRESVEYI 171
                      13334445************************************************99998877643367**************9998888776 PP

  Glyco_transf_15 140 areelad...iaygdsesyrhmcRyysGlfykhellkkydyYwRvePdiklycdieyDvfkymkdekkiygFtlslkeieetiktlWdstkkfl 230
                      + ++      i yg++esy+ mcR+ysGlfykh+l++++++YwR+ePd++++cd+ yD f  m+ +kk ygFt+ + e   t+++l+  +k+f+
       CCD25850.2 172 QWIDSQGdrgILYGNMESYHKMCRFYSGLFYKHPLVRQFEWYWRLEPDVEFFCDLSYDPFWEMERTKKYYGFTVVIPELYWTVPNLFRFVKSFV 265
                      6555544489************************************************************************************ PP

  Glyco_transf_15 231 kenkefieeknslsf 245
                      ke + +++ k+  + 
       CCD25850.2 266 KERQSYVKFKSLWKL 280
                      ******997665443 PP

  == domain 2  score: 108.4 bits;  conditional E-value: 2.3e-35
  Glyco_transf_15 208 FtlslkeieetiktlWdstkkflkenkefieeknslsflsdddqd..tynlCeFwsnfeigdldffrseayekfFeylDskGgffYerWgdapv 299
                      Ft    e+ + ++t  ds +   k+ k +ie++ s+  +++d+ d  +ynlC+Fwsnfei+++ +f +e y++fF+yl+s+Ggf+ erWgdap+
       CCD25850.2 324 FTTHENETIRNNNTHADSHLAVEKSWKSLIEKSKSKIPIKEDKFDdeEYNLCHFWSNFEIAKISIFDNEIYDEFFQYLESTGGFWKERWGDAPI 417
                      6666778888888999999999999*******9999999988654449********************************************** PP

  Glyco_transf_15 300 hsiavslllpkdkihffedigyshd 324
                      hs+++sl+l+ +++h+f+digy h+
       CCD25850.2 418 HSLGLSLILNLNEVHYFRDIGYRHS 442
                      **********************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       719  (0.0401026); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 4199.42
//
Query:       CCD25851.2  [L=103]
Description: hypothetical protein NDAI_0G00750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-09   37.6   0.1    2.2e-09   37.4   0.1    1.2  1  CENP-T_C       Centromere kinetochore component CENP-T histon
    1.4e-05   25.4   0.2    1.7e-05   25.2   0.2    1.2  1  Histone        Core histone H2A/H2B/H3/H4
    1.9e-05   24.9   0.1    3.2e-05   24.1   0.0    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    2.5e-05   24.4   0.1    3.4e-05   23.9   0.1    1.3  1  TAF            TATA box binding protein associated factor (TA
    0.00016   22.0   0.1    0.00022   21.6   0.1    1.4  1  CENP-S         CENP-S protein
     0.0028   17.7   0.0     0.0034   17.4   0.0    1.1  1  TFIID-31kDa    Transcription initiation factor IID, 31kD subu
     0.0093   16.0   0.0      0.013   15.5   0.0    1.2  1  Bromo_TP       Bromodomain associated
  ------ inclusion threshold ------
      0.049   14.1   0.0      0.081   13.4   0.0    1.4  1  TFIID_20kDa    Transcription initiation factor TFIID subunit 


Domain annotation for each model (and alignments):
>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1     1e-12   2.2e-09      17      79 ..      34      96 ..      18      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1e-12
    CENP-T_C 17 akrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79
                a r   ++g  ++++   ++ +  +++ f+e v +D  +y++Ha+RKt+ + Dv+  +krq++
  CCD25851.2 34 AIRRLARRGGVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96
                444444456777999999*******************************************86 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.2   7.5e-09   1.7e-05      78     129 ..      41      92 ..      16      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 7.5e-09
                 TSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  78 ekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 ++  +ris+   + + ++l+ +l+++  +A  +++haKR+T+t+ D+  A++
  CCD25851.2  41 RGGVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92 
                 5666777777777788999****************************99987 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.4e-08   3.2e-05       8      65 .]      35      91 ..      28      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.4e-08
                   HHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  8 vkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   ++++ +   ++++i+    e +  ++++f+e++ + A+ +++++krKt++  ++  A+
     CCD25851.2 35 IRRLARRG-GVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYAL 91
                   77888888.888999999999999*****************************98876 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.5e-08   3.4e-05       5      66 .]      31      92 ..      27      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.5e-08
                -HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  5 pkesvkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                +k +++ +A   G++ +s    +++   ++  l  ++++a+ +++h+kR++ t+ Dv +AL+
  CCD25851.2 31 TKPAIRRLARRGGVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92
                66677888888888888877777777778888999*************************98 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   9.6e-08   0.00022      41      73 ..      62      94 ..      21      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 9.6e-08
      CENP-S 41 qlenlakDLeaFakHAkRstittdDvlLlaRrn 73
                 le++ +D  ++ +HAkR+t+t  Dv+  ++r+
  CCD25851.2 62 FLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                3889999*******************9998885 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06    0.0034      13      70 ..      37      94 ..      31     101 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-06
  TFIID-31kDa 13 liLaslgvteyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAiqsr 70
                  + +  gv+ ++  +++ +  +   +  sv++dA ++ ehak+k+v+  dv  A++ +
   CCD25851.2 37 RLARRGGVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                 55566678888888888888889999*************************9998865 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     6e-06     0.013      33      70 ..      56      93 ..      43      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6e-06
                HHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHH CS
    Bromo_TP 33 teiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70
                + +++++++++ ++a  + eha R ++t  Dvv +L++
  CCD25851.2 56 RAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93
                678999******************************97 PP

>> TFIID_20kDa  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.6e-05     0.081      30      65 ..      59      94 ..      43      95 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHHH CS
  TFIID_20kDa 30 addFvesvtkfacklakhRksdklevrDiqlhlern 65
                    F esv+  a+    h k +++ + D+ + l+r+
   CCD25851.2 59 LKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                 567*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.37u 0.22s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 864.14
//
Query:       CCD25852.2  [L=136]
Description: hypothetical protein NDAI_0G00760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.1e-49  166.7   3.4    3.4e-49  166.5   3.4    1.0  1  Histone         Core histone H2A/H2B/H3/H4
      2e-06   28.1   0.0      3e-06   27.5   0.0    1.2  1  CENP-S          CENP-S protein
    5.5e-05   23.8   1.3    6.9e-05   23.5   1.3    1.2  1  PAF             PCNA-associated factor histone like domain
    0.00011   22.3   0.8    0.00015   21.9   0.1    1.6  2  CENP-T_C        Centromere kinetochore component CENP-T histo
     0.0018   18.5   0.9     0.0023   18.2   0.1    1.6  2  CBFD_NFYB_HMF   Histone-like transcription factor (CBF/NF-Y) 
  ------ inclusion threshold ------
      0.035   14.2   0.2      0.058   13.5   0.0    1.5  2  TFIID-31kDa     Transcription initiation factor IID, 31kD sub


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.5   3.4   1.1e-52   3.4e-49       1     131 []       1     132 [.       1     132 [. 0.99

  Alignments for each domain:
  == domain 1  score: 166.5 bits;  conditional E-value: 1.1e-52
                 XXEESXEEEXXXXEEXXXXXXXXXXHT.TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHH CS
     Histone   1 marekekarkesektapekkvsakker.kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEa 98 
                 mar+k++ark+++++ap+k++++k +r +a+s+   kk++ry+pgtval+eir+ qkst+lli+klpf+R+vrei +++k+dlr++++a+ alqe +Ea
  CCD25852.2   1 MARTKQTARKSTGGKAPRKQLASKAARkSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEA 99 
                 9************************************************************************************************** PP

                 HHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  99 llvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                 +lv+lfe++nl+a+haKRvTi++kDi+lArrlr
  CCD25852.2 100 YLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLR 132
                 *******************************97 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     1e-09     3e-06      13      71 ..      70     130 ..      65     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1e-09
      CENP-S  13 kiveeeaa..ekeveatkqfiaaltelvykqlenlakDLeaFakHAkRstittdDvlLlaR 71 
                 ++v+e+a+  ++++++ +++i+al e v + l +l +D ++ a HAkR ti+++D++L  R
  CCD25852.2  70 RLVREIAQdfKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARR 130
                 556665442366778999***************************************9876 PP

>> PAF  PCNA-associated factor histone like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   1.3   2.3e-08   6.9e-05       1      62 [.       1      58 [.       1      78 [. 0.89

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.3e-08
         PAF  1 mVRTkAdvssarkavaakAprkslgassssssssssspkkkkkkyvGGNpvcpRptPaWQKp 62
                m RTk ++   rk  ++kAprk+l+++   +s+ s++  kk + y +G  v  R++   QK 
  CCD25852.2  1 MARTKQTA---RKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPG-TVALREIRRFQKS 58
                99******...****************999999999988888888888.6888888888885 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.4   7.3e+03      14      25 ..      19      30 ..      14      39 .. 0.59
   2 !   21.9   0.1   4.9e-08   0.00015      11      75 ..      70     129 ..      59     135 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
    CENP-T_C 14 kklakrfakasg 25
                k+la+++a++s+
  CCD25852.2 19 KQLASKAARKSA 30
                445555555544 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 4.9e-08
    CENP-T_C  11 avvkklakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmk 75 
                  +v+ +a++f     +  + + +a+ al+++ + ++  + eD +  a Ha+R ti+++D+ l  +
  CCD25852.2  70 RLVREIAQDF----KTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKL-AR 129
                 3455666666....56799****************************************864.44 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       4.8   1.4e+04      39      46 ..      20      27 ..      19      29 .. 0.58
   2 !   18.2   0.1   7.6e-07    0.0023       2      64 ..      65     128 ..      64     128 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.8
                   HHHHHHHH CS
  CBFD_NFYB_HMF 39 elaseAae 46
                   +las+Aa+
     CCD25852.2 20 QLASKAAR 27
                   46666664 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 7.6e-07
                    XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklA 64 
                    +LP  r  + + +d + + ++ ++A   ++e+ve ++ +l + ++  + ++kr ti++++iklA
     CCD25852.2  65 KLPFQRLVREIAQDfKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLA 128
                    78888887777777799999******************************************98 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.5   7.6e+03      73      90 ..      10      27 ..       4      31 .. 0.63
   2 ?   13.5   0.0   1.9e-05     0.058      22      67 ..      84     129 ..      67     136 .] 0.82

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.5
  TFIID-31kDa 73 kqfkepppkelLlelAae 90
                 k+  ++ p++ L + Aa+
   CCD25852.2 10 KSTGGKAPRKQLASKAAR 27
                 455556777777776654 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.9e-05
  TFIID-31kDa  22 eyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAi 67 
                   +++  +  L + +  y +s++ed ++ a hak+ +++ +d++lA 
   CCD25852.2  84 RFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLAR 129
                  577888889999999*****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       436  (0.0243181); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.21s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 1175.89
//
Query:       CCD25853.2  [L=339]
Description: hypothetical protein NDAI_0G00770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-66  221.8   0.1    6.3e-66  221.0   0.1    1.4  1  Y_phosphatase2  Tyrosine phosphatase family
    6.7e-07   29.5   0.0    8.5e-07   29.2   0.0    1.3  1  Y_phosphatase3  Tyrosine phosphatase family
      0.001   18.9   0.0     0.0022   17.8   0.0    1.7  1  DSPc            Dual specificity phosphatase, catalytic domai
     0.0092   15.6   0.0      0.016   14.8   0.0    1.3  1  Y_phosphatase   Protein-tyrosine phosphatase
  ------ inclusion threshold ------
      0.042   12.7   0.0       0.07   11.9   0.0    1.3  1  DUF4301         Domain of unknown function (DUF4301)


Domain annotation for each model (and alignments):
>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.0   0.1   1.8e-69   6.3e-66       1     161 [.     174     334 ..     174     338 .. 0.97

  Alignments for each domain:
  == domain 1  score: 221.0 bits;  conditional E-value: 1.8e-69
                     B---TT-EEEETTEEEESS--HHHHHHHHH.CT-SEEEE-SSS---HHHHHHHHHCT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SE CS
  Y_phosphatase2   1 lvpplnFsaveselyrssyprasnfsflks.LkLktiislspeeesqdelqfleeekiklyhiaiesnkeelveiksdllkkalklllnkenypv 94 
                     ++pp+nFs+v  e+yrss+pr +nf+flk+ LkLk+ii+l+pee++q++  flee +ikl+++ +++nke++v+i+sdll++al+++ln +n+p+
      CCD25853.2 174 VIPPENFSHVIGEIYRSSFPRIENFPFLKKrLKLKSIIVLIPEEYPQENFDFLEESNIKLFQVGMSGNKEPFVNIPSDLLTNALEIVLNPANQPI 268
                     69********************************************************************************************* PP

                     EEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHCCC--HHHHHHHHC---HHHHHHHH.HTT- CS
  Y_phosphatase2  95 llhckrGkhrtglvigclRklqkWslasilnEyrrFsgskkrivdeefienfdselevekknkklkv 161
                     l+hc+rGkhrtg+++gc+Rklq+Wsl++i++EyrrF+ +k+r++d++fie++d++ +++ +n  +++
      CCD25853.2 269 LIHCNRGKHRTGCLVGCIRKLQNWSLTMIFDEYRRFAFPKARALDQQFIEMYDDKEIKRIAN-RNNW 334
                     ******************************************************99999987.5555 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.4e-10   8.5e-07     107     158 ..     250     303 ..     133     332 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 2.4e-10
  Y_phosphatase3 107 kkayrkvfealad.ee.pvlfHCtaGKDRTGvlaalllsllGvdeedivaDYll 158
                     ++ + +++e +++ ++ p+l+HC  GK RTG l+  + +l + +   i+++Y +
      CCD25853.2 250 SDLLTNALEIVLNpANqPILIHCNRGKHRTGCLVGCIRKLQNWSLTMIFDEYRR 303
                     46678899999997558***********************************75 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   6.3e-07    0.0022      33     105 ..     224     296 ..     187     321 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6.3e-07
                 ECCTTTTSEEEEECCESSTTSCCGGGHHHHHHHHHHH.HHTT-EEEEEESSSSSHHHHHHHHHHHHHHTSCHHH CS
        DSPc  33 nalkkseieklripvedehetkiskyleeavefidka.kqkgkkvlVHCqaGisRSatliiaYlmktknlslne 105
                  +l++s+i+ +++ ++ ++e  +    + +++ ++ +    ++ +l+HC+ G  R+++l+ + + k +n+sl +
  CCD25853.2 224 DFLEESNIKLFQVGMSGNKEPFVNIPSDLLTNALEIVlNPANQPILIHCNRGKHRTGCLVGC-IRKLQNWSLTM 296
                 5666677777777766633333322233355555544367899****************987.55566666655 PP

>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.4e-06     0.016     166     190 ..     256     285 ..     234     300 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.4e-06
                    H.....STTSS-EEEECSSSSHHHHHHHHH CS
  Y_phosphatase 166 k.....eaksgpvvVhCsaGvgRtgtfval 190
                          ++ ++p+++hC  G  Rtg++v  
     CCD25853.2 256 AleivlNPANQPILIHCNRGKHRTGCLVGC 285
                    3344456779*****************976 PP

>> DUF4301  Domain of unknown function (DUF4301)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     2e-05      0.07       8      69 ..      90     152 ..      83     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2e-05
     DUF4301   8 ieekgiseekveeqleafkkgfpflklek.aatvedGilklseeeeeklieayekkkeekkvv 69 
                 i++  i e +++e l++f+kg  +l+l++  +t+e+Gi  l++e+e+++ ++ e+++++k+++
  CCD25853.2  90 ISDDRILEGEFNEVLKQFRKGSDILNLRDnETTIERGINDLEDEDEDDVYDSKEHHAKSKEIL 152
                 566678888999***************8626899***************99999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2663.91
//
Query:       CCD25854.2  [L=486]
Description: hypothetical protein NDAI_0G00780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-30  105.9  29.4    1.1e-29  103.8  29.4    1.9  1  UCH         Ubiquitin carboxyl-terminal hydrolase
  ------ inclusion threshold ------
       0.05   13.5   0.5       0.22   11.5   0.5    2.1  1  DUF3924     Protein of unknown function (DUF3924)
       0.14   12.3   2.9        0.1   12.8   1.0    1.7  2  OrfB_IS605  Probable transposase


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8  29.4   1.8e-33   1.1e-29       2     257 .]       7     482 ..       6     482 .. 0.81

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 1.8e-33
                 EES-.SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC..................................-.TT.TTS.TTH......... CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................xxxxxxxxxxxx......... RF
         UCH   2 GlsN.lGntCymnsvlQcLfsipelrdyllsleevkkesrnkke..................................lnesnplgkkge......... 56 
                 Gl+N  Gn+C++ns+lQ+ +s++ l ++l +  e+k++ ++++                                   l                    
  CCD25854.2   7 GLNNdDGNSCFINSILQSSASCNYLLQFLDNVIENKTTGTDANVaeftttiekkpkciiskskygkkkknkkqnqknpL----------Aeknskyhnn 95 
                 6777359****************99999999777776666665577777787777777777777766666665444331..........0333344444 PP

                 ..HHHHHHHHHHHHH....SH-CCEE--HHHHHHHHHHSGGGTSSSTCEHHHHHHHHHHHHHHHHCCHCCCHHHHHHCCCTTS.HHHHHH-EEEEE... CS
                 ..xxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx... RF
         UCH  57 ..lakalkdlfkell....kskskavsPkklkktlsklaksfsgykqqDaqEflaflLdqlhedlnrevaeekwkkhlkrnds.litdlfegqlks... 145
                   ++ +l++l+ +++    ++k  ++s++k+++tls+    ++  +qqDaqEfl++l+++l+++        +++ ++++nd   i++ feg l     
  CCD25854.2  96 ekFFIELRKLLTNVNtrytHKKGLSFSTSKFISTLSSQTI-INATDQQDAQEFLQILFNDLEKSQIF-----HTTVKITSNDAlQIKTPFEGILMArmk 188
                 559999999999999999988999***********87665.5*******************998777.....333333333331466667777666677 PP

                 .................................................................................................EE CS
                 .................................................................................................xx RF
         UCH 146 .................................................................................................kl 147
                                                                                                                  ++
  CCD25854.2 189 cltcdeisnpnfklfsnltlslpryskqetfndilstfwnqldyvenvscnrctllkhansnseyqnllvkdvikdddmenilkrdnlemvksnkikQI 287
                 79999999999999999999999999999999999999999999******************************************************* PP

                 EEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-G.............................GGBSS-BTTS-TCS-B............. CS
                 xxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxx.............................xxxxxxxxxxxxxxxx............. RF
         UCH 148 klkrlPeiLiihlkRfsynss...ksKlntkvefpeeldls.............................sylaeekkkkteekkk............. 201
                 k+ + P+iL++h++R  ++++    +K+n+kv    +l++s                             s              +             
  CCD25854.2 288 KILKPPKILSFHFNRSIFDRKqfkFKKNNCKVLLTPKLNISkfcivdsdlavdvadgyapdfyyknkngnS--------------Ekdkkyyeklhqsy 372
                 ******************99999999***************777777777777777777665444444440..............03344556666666 PP

                 .......................................................EEEEEEEEEESCTTSEEEEEEEECTTTTEEEEEETTEEEEE-HH CS
                 .......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         UCH 202 .......................................................YeLiavvvHsGslssGHYvayiknekngkWykydDetvkevkee 245
                                                                        Y+L ++vvH+Gs+++GHY++y++   + +W++++De+v +v+e+
  CCD25854.2 373 eteyaqsdedddfnesrdenqynsrqdipenidlfdsqnfplkelghiignnkcvYSLKSIVVHYGSHDYGHYISYRR--FEDQWWRISDESVLKVDED 469
                 67777777777777777799999999****************************************************..7899*************87 PP

                 CCCTT..CEEEEEE CS
                 xxxxx..xxxxxxx RF
         UCH 246 eevls..sayiLfY 257
                  ev s    +i fY
  CCD25854.2 470 -EVFSasGIFIVFY 482
                 .7776544455555 PP

>> DUF3924  Protein of unknown function (DUF3924)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   3.6e-05      0.22      21      58 ..     111     148 ..     100     150 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.6e-05
     DUF3924  21 qayekktGasisestlvqtliskefiqaitPfdlqqfv 58 
                   y  k G s s s ++ tl s+  i a    d q f+
  CCD25854.2 111 TRYTHKKGLSFSTSKFISTLSSQTIINATDQQDAQEFL 148
                 56999******************************997 PP

>> OrfB_IS605  Probable transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   1.0   1.7e-05       0.1      13      90 ..      38     115 ..      25     118 .. 0.94
   2 ?   -3.7   0.0       2.3   1.4e+04      74      83 ..     358     367 ..     339     378 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
  OrfB_IS605  13 pkgnkaagiDlGinnLatvvtedgtwflykgrrlksdykylakeiaelqsklkksknykkasrklarlhrkrsrrrkh 90 
                 + +nk+ g D ++  + t+ +++ + ++ k++  k+++ + ++++  l+ k +k +n +k   +l++l  +++ r +h
  CCD25854.2  38 VIENKTTGTDANVAEFTTTIEKKPKCIISKSKYGKKKKNKKQNQKNPLAEKNSKYHNNEKFFIELRKLLTNVNTRYTH 115
                 56899****************************************************9***********999999888 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 2.3
  OrfB_IS605  74 srklarlhrk 83 
                 s+k +++++k
  CCD25854.2 358 SEKDKKYYEK 367
                 2333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1820  (0.101512); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.22s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3602.33
//
Query:       CCD25855.2  [L=181]
Description: hypothetical protein NDAI_0G00790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.2e-32  110.8   0.0    4.4e-32  110.4   0.0    1.2  1  Frataxin_Cyay    Frataxin-like domain
  ------ inclusion threshold ------
      0.043   13.6   0.1       0.12   12.3   0.1    1.8  1  CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CP
      0.065   12.5   0.0      0.085   12.1   0.0    1.2  1  RE_SinI          SinI restriction endonuclease


Domain annotation for each model (and alignments):
>> Frataxin_Cyay  Frataxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.0   7.4e-36   4.4e-32       2     104 ..      73     175 ..      72     179 .. 0.95

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 7.4e-36
                    HHHHHHHHHHHHHHHHHHHH.HHHHH--CTS..SEEEETTEEEEEETTS-EEEEEEEGGGTEEEEEES.SEEEEEEEET.TEEEETTTT-BHHHHH CS
  Frataxin_Cyay   2 sdeeyhkladelldsleekleelaeeaeede.ldveyssgvLtiefekkgtyvinkqppnkqIWlsspisgpkrfdydekgeWiskrdgseLkelL 96 
                    s ++yh+++de+l++l + +e+l+e+++e+  ++veys+gv+t++++  g+y+inkqp nkqIW+sspisgp+rfd+ + ++W+s rdg+ L++lL
     CCD25855.2  73 SMQTYHEQSDEFLENLMNIMETLSETYPENFgSEVEYSDGVFTMTVPRVGSYIINKQPSNKQIWVSSPISGPNRFDFYK-NDWRSLRDGKLLTDLL 167
                    6799***********************99999*********************************************86.8*************** PP

                    HHHHHHHH CS
  Frataxin_Cyay  97 eeelskal 104
                    ++e+++++
     CCD25855.2 168 NDEFKDIV 175
                    ***99875 PP

>> CPSase_sm_chain  Carbamoyl-phosphate synthase small chain, CPSase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.9e-05      0.12      27      77 ..      91     141 ..      41     159 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.9e-05
  CPSase_sm_chain  27 vfnTgmtGYqeil.tDpsYagqilvltypliGnyGvneedvesekikvaglv 77 
                      +++T    Y+e + ++  Y++ + ++t+p +G+y +n ++ ++++i+v++ +
       CCD25855.2  91 IMETLSETYPENFgSEVEYSDGVFTMTVPRVGSYIIN-KQPSNKQIWVSSPI 141
                      567778889988735678******************9.66666789998755 PP

>> RE_SinI  SinI restriction endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.4e-05     0.085      33      97 ..      26      88 ..       4     108 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.4e-05
     RE_SinI 33 ialsalkkkkrsvvndeeliilaakyfdkyrdsdtplipstvpdeivsvvlqkayevseeeleki 97
                ++ s      +s +n+ +li   ak f       t    + +pdei+ + +q ++e s+e le++
  CCD25855.2 26 VYCSRISTNAKSCMNKRNLINHNAKRFYA--MGITTTKGEIIPDEILHLSMQTYHEQSDEFLENL 88
                56677778889999999999999999855..456677899********************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      576  (0.0321267); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1367.99
//
Query:       CCD25856.2  [L=75]
Description: hypothetical protein NDAI_0G00800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.032   14.1   0.0      0.045   13.6   0.0    1.4  1  DAHP_snth_FXD  DAHP synthase ferredoxin-like domain
       0.12   12.8   0.1       0.15   12.5   0.1    1.3  1  BRCT_2         BRCT domain, a BRCA1 C-terminus domain


Domain annotation for each model (and alignments):
>> DAHP_snth_FXD  DAHP synthase ferredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0     5e-06     0.045       2      28 ..       6      32 ..       5      46 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5e-06
  DAHP_snth_FXD  2 IivmkkgateeqieevierieelGlkv 28
                   I+ +kk++ +e+ ++v+e i+ lG +v
     CCD25856.2  6 IVTLKKNTPKEDAHKVVESINHLGGTV 32
                   99********************99765 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.7e-05      0.15      12      40 ..       6      46 ..       3      74 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.7e-05
      BRCT_2 12 in...daepspsreklkklIeknGGevveti.........t 40
                i+   +++p+++ +k+ + I + GG+vv++           
  CCD25856.2  6 IVtlkKNTPKEDAHKVVESINHLGGTVVHEFslikgfkvkV 46
                5445567899*****************99985444444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       518  (0.0288917); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.22s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 577.00
//
Query:       CCD25857.2  [L=1049]
Description: hypothetical protein NDAI_0G00810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.1e-46  156.3   0.0    9.9e-22   77.9   0.0    4.1  2  ABC_tran        ABC transporter
    1.9e-27   95.2   0.2    5.4e-27   93.7   0.2    1.9  1  4HB             Four helical bundle domain
    2.8e-19   70.1   0.6    7.7e-05   22.6   0.0    4.9  5  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
    7.9e-15   54.9   0.2    5.2e-06   26.1   0.0    4.3  3  SMC_N           RecF/RecN/SMC N terminal domain
    6.9e-10   39.8   6.5    0.00032   21.2   0.0    3.5  3  AAA_23          AAA domain
    4.4e-09   36.7   0.0     0.0028   17.9   0.0    4.4  3  AAA_22          AAA domain
    7.2e-09   35.3   0.0     0.0036   17.0   0.1    2.6  2  AAA_29          P-loop containing region of AAA domain
    4.4e-08   33.2   0.1    0.00047   20.1   0.0    2.8  2  RsgA_GTPase     RsgA GTPase
    5.8e-08   33.1   0.0     0.0023   18.2   0.0    2.5  2  AAA_28          AAA domain
    7.9e-08   32.4   0.1     0.0022   18.1   0.0    3.4  2  MMR_HSR1        50S ribosome-binding GTPase
    3.4e-06   27.2   0.0    6.6e-05   23.0   0.0    2.7  2  Dynamin_N       Dynamin family
      6e-06   26.6   0.0       0.14   12.5   0.0    3.1  2  RNA_helicase    RNA helicase
    3.1e-05   24.5   0.0       0.46   11.0   0.0    3.3  2  AAA_18          AAA domain
    4.4e-05   23.7   0.0       0.44   10.7   0.0    2.9  2  AAA_33          AAA domain
    8.6e-05   23.0   0.0        1.8    9.0   0.0    4.1  3  AAA             ATPase family associated with various cellula
    0.00011   21.3   0.2       0.29   10.1   0.0    2.3  2  MeaB            Methylmalonyl Co-A mutase-associated GTPase M
    0.00014   21.9   0.1        3.6    7.4   0.0    4.0  4  Rad17           Rad17 P-loop domain
     0.0002   21.5   1.4       0.43   10.6   0.0    4.6  4  DUF87           Helicase HerA, central domain
    0.00034   20.3   0.0       0.32   10.6   0.0    2.6  2  AAA_27          AAA domain
    0.00041   20.2   9.0       0.24   11.1   0.0    4.6  4  AAA_15          AAA ATPase domain
     0.0005   20.5   0.0       0.45   10.9   0.0    3.1  2  AAA_16          AAA ATPase domain
    0.00079   19.2   0.0        1.7    8.3   0.0    3.2  3  AAA_24          AAA domain
    0.00089   19.4   0.0       0.73   10.1   0.0    3.2  2  SbcCD_C         Putative exonuclease SbcCD, C subunit
     0.0011   17.7   0.1        3.8    6.0   0.0    3.5  3  AAA_13          AAA domain
     0.0012   18.8   0.0       0.95    9.4   0.0    3.0  3  NACHT           NACHT domain
     0.0013   18.5   0.0       0.15   11.8   0.0    2.9  2  PduV-EutP       Ethanolamine utilisation - propanediol utilis
     0.0026   17.9   0.5        6.5    6.8   0.0    3.1  3  ParcG           Parkin co-regulated protein
     0.0032   17.5   0.0        7.7    6.6   0.0    3.4  3  AAA_14          AAA domain
     0.0036   16.9   1.6        2.5    7.6   0.0    3.9  3  cobW            CobW/HypB/UreG, nucleotide-binding domain
     0.0042   16.8   0.2        5.1    6.8   0.1    3.2  3  AAA_30          AAA domain
     0.0046   16.5   2.6      0.014   15.0   1.6    2.2  2  CLASP_N         CLASP N terminal
     0.0056   15.8   6.5        1.9    7.5   0.0    3.5  3  MMS19_C         RNAPII transcription regulator C-terminal
     0.0064   15.8   1.3        2.9    7.1   0.0    3.4  3  Septin          Septin
  ------ inclusion threshold ------
      0.012   15.5   2.0      0.042   13.7   1.3    2.4  1  UME             UME (NUC010) domain
      0.015   15.0   0.0        7.9    6.1   0.0    2.6  2  Cytidylate_kin  Cytidylate kinase
      0.015   15.5   0.0         11    6.2   0.0    2.9  2  Roc             Ras of Complex, Roc, domain of DAPkinase
      0.016   15.5   0.0       0.42   11.0   0.0    2.9  4  HEAT_2          HEAT repeats
      0.017   14.9   0.1        1.9    8.3   0.0    3.0  2  CLP1_P          mRNA cleavage and polyadenylation factor CLP1
      0.018   15.0   0.0        3.3    7.6   0.0    2.5  2  Ploopntkinase3  P-loop Nucleotide Kinase3
      0.029   13.5   0.1        8.5    5.4   0.0    2.8  3  G-alpha         G-protein alpha subunit
       0.03   14.1   0.0        5.9    6.6   0.0    3.1  2  IstB_IS21       IstB-like ATP binding protein
      0.039   13.7   0.5        8.4    6.1   0.1    2.7  2  ATP_bind_1      Conserved hypothetical ATP binding protein
       0.04   13.3   0.0        2.3    7.6   0.0    3.1  3  Mg_chelatase    Magnesium chelatase, subunit ChlI
       0.04   13.4   0.0         11    5.4   0.0    2.4  2  AAA_7           P-loop containing dynein motor region
      0.041   13.8   0.8         12    5.7   0.0    3.4  4  ATPase_2        ATPase domain predominantly from Archaea
      0.044   13.4   0.0        9.6    5.7   0.0    2.6  2  AAA_25          AAA domain
      0.044   14.0   0.1         49    4.6   0.0    4.4  3  HEAT            HEAT repeat
      0.066   13.2   0.1        8.2    6.4   0.1    2.5  2  MutS_V          MutS domain V
      0.084   11.9   0.0       0.76    8.8   0.0    2.3  2  T2SSE           Type II/IV secretion system protein
      0.084   12.8   0.0         14    5.6   0.0    3.0  2  NTPase_1        NTPase
        0.1   13.2   0.1        8.6    7.0   0.0    3.1  2  Vac14_Fab1_bd   Vacuolar 14 Fab1-binding region
       0.11   12.3   0.0          9    6.1   0.0    2.8  2  dNK             Deoxynucleoside kinase
       0.12   12.3   0.1        8.1    6.5   0.0    2.4  2  TsaE            Threonylcarbamoyl adenosine biosynthesis prot
       0.21   11.4   1.7         15    5.4   0.1    2.9  3  MukB            MukB N-terminal


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.0   2.2e-22   7.2e-20       1     137 []     449     575 ..     449     575 .. 0.83
   2 !   77.9   0.0     3e-24   9.9e-22       2     137 .]     688     928 ..     687     928 .. 0.73

  Alignments for each domain:
  == domain 1  score: 71.9 bits;  conditional E-value: 2.2e-22
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS.--S-TTSBHHHH...HHHTCHHHHHHHSTTG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxx...xxxxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqe.pqlfpeltvren...esdeeiekalsklglk 95 
                 l++ +l lk+g+++++ G+nGaGKStL++++a+      G++  +g ++++      + +  +++++ ++  ++++v +        e ++++skl+  
  CCD25857.2 449 LNKTQLRLKRGRRYGLCGPNGAGKSTLMRAMAN------GQV--EGFPTQD------ECKTVYVEHDiDNTHSDTSVVDFvfeSGVGERDAIISKLNEF 533
                 678899************************985......555..4445555......666777777777777777777776633334589999999999 PP

                 GTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  96 elkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++ ++ v++  ssLSgG+k ++alara+lk++++lllDEpt+
  CCD25857.2 534 GFSNDAVNQPISSLSGGWKMKLALARAVLKNADILLLDEPTN 575
                 9******8889******************************8 PP

  == domain 2  score: 77.9 bits;  conditional E-value: 3e-24
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE.....................EETTCEGGG........B-HHHCCHCEEEE-SS--S- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxx........xxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGei.....................lldgkdlke........qeleslrkeigvlpqepqlf 71 
                 ++v+++++ ++++a++G+nGaGKStL+++l+g+l pt G++                     +ld++++++        ++                  
  CCD25857.2 688 SDVTFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTTGDVythencriayikqhafahienHLDKTPSEYiqwrfqtgED------------------ 768
                 689**************************************8777777776666666655555555555554333333322.................. PP

                 TTSBHHHH........................................................................................... CS
                 xxxxxxxx........................................................................................... RF
    ABC_tran  72 peltvren........................................................................................... 79 
                        +                                                                                           
  CCD25857.2 769 -------Retmdranrqinesdtemmnkifkiegtprrvagihsrrkfkntyeyecsfllgenigmkserwvpmmsvdnawlprgelveshsklvaevd 860
                 .......1222222334444445555566666788999999999999*******************999999999999999999988888877777665 PP

                 ............HHHTCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ............xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ............esdeeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137
                                   +++ ++ ++ +l+ + v++s  + LSgGqk++++la+  ++kp l++lDEpt+
  CCD25857.2 861 mkealasgqfraLT---RKEIEEHCSMLGLDSELVSHSRiRGLSGGQKVKLVLAAGTWQKPHLIVLDEPTN 928
                 55555444433323...44444444444455566655556******************************8 PP

>> 4HB  Four helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.2   1.6e-29   5.4e-27       1      78 []     336     414 ..     336     414 .. 0.96

  Alignments for each domain:
  == domain 1  score: 93.7 bits;  conditional E-value: 1.6e-29
         4HB   1 Gdietvlailkeilks.kkkkvaekfepvleYiaAiAgqLiDekeidsaaWvenlkpyvtvivgekeakeivdelRkrA 78 
                 Gd+++ l+ +k++l++ k +++ ++fe+v++YiaAiA++LiDe+ id++aW+++++py+t++++e+++k+++de+RkrA
  CCD25857.2 336 GDVSVNLQLFKTLLANaKVTDIDSRFEVVIQYIAAIAANLIDERIIDQQAWFTHVTPYMTIFLHEQQSKDMLDEFRKRA 414
                 9************9863778999*******************************************************9 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.5e-05     0.015       3      21 ..     463     481 ..     462     504 .. 0.85
   2 !   22.6   0.0   2.3e-07   7.7e-05     223     303 .]     533     607 ..     497     607 .. 0.86
   3 !   13.7   0.2   0.00012      0.04       3      19 ..     701     717 ..     700     730 .. 0.89
   4 ?   -2.4   0.0       9.5   3.1e+03      36      84 ..     797     846 ..     788     861 .. 0.81
   5 !   12.2   0.0   0.00036      0.12     235     300 ..     898     957 ..     888     960 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.5e-05
      AAA_21   3 vliGpNgsGKSnLLdaldl 21 
                 +l GpNg+GKS+L++a+  
  CCD25857.2 463 GLCGPNGAGKSTLMRAMAN 481
                 699*************964 PP

  == domain 2  score: 22.6 bits;  conditional E-value: 2.3e-07
      AAA_21 223 flengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                 f   +d  + p+++lS G k  lal+ a+l  +   ++ll+DEp n+L+   ++ l++ l+++   g+  i+++H+  +ld
  CCD25857.2 533 FGFSNDAVNQPISSLSGGWKMKLALARAVLKNA---DILLLDEPTNHLDTVNVAWLVDYLNNC---GITSIIVSHDSGFLD 607
                 5667889999************9**99999999...***************************...7799*****988776 PP

  == domain 3  score: 13.7 bits;  conditional E-value: 0.00012
      AAA_21   3 vliGpNgsGKSnLLdal 19 
                 ++iGpNg+GKS+L+  l
  CCD25857.2 701 AVIGPNGAGKSTLINVL 717
                 79************988 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 9.5
      AAA_21  36 lsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv..e 84 
                 +++  gi + +++ ++y+ e +f ++ +  ++++ r+   + +++ ++  +
  CCD25857.2 797 PRRVAGIHSRRKFKNTYEYECSFLLGEN-IGMKSERWVPMMSVDNAWLprG 846
                 566667788889999999**********.*********9999999998543 PP

  == domain 5  score: 12.2 bits;  conditional E-value: 0.00036
      AAA_21 235 relSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpl 300
                 r lS G+k  l l++  ++ +    l+++DEp n L+   l  l + lk+ +     vi+ THS +
  CCD25857.2 898 RGLSGGQKVKLVLAAGTWQKP---HLIVLDEPTNYLDRDSLGALSKALKAFEG---GVIIITHSAE 957
                 667888888877777777766...89*************************99...********86 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0045       1.5      28      44 ..     463     479 ..     446     483 .. 0.85
   2 !   13.9   0.0   8.4e-05     0.028     124     205 ..     527     609 ..     490     618 .. 0.77
   3 !   26.1   0.0   1.6e-08   5.2e-06      27     208 ..     700     966 ..     688     975 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0045
                 EEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  28 aivGpNGSGKsnlldAi 44 
                  + GpNG+GKs l+ A+
  CCD25857.2 463 GLCGPNGAGKSTLMRAM 479
                 589***********998 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 8.4e-05
                 HHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC- CS
                 xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 124 sellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka 205
                  + l++ g+s +       +LSgG k    + L +A    k a + llDe   +LD  nv+ ++++l++       i++s+++++l ++
  CCD25857.2 527 ISKLNEFGFSNDavnqpisSLSGGWK----MKLALARAVLKNADILLLDEPTNHLDTVNVAWLVDYLNNCG--ITSIIVSHDSGFLDNV 609
                 55555555555555555558999987....45566677789999************************999..889*****99998876 PP

  == domain 3  score: 26.1 bits;  conditional E-value: 1.6e-08
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--........BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrseklsdlihk........skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingke 117
                  a++GpNG+GKs l++ +   L  ++   +  ++  ++ +         +++ +++ + +++  f+  ++++++++ + +i+ +  +  +  +ki+g+ 
  CCD25857.2 700 IAVIGPNGAGKSTLINVLTGELLPTTG-DVYTHENCRIAYIkqhafahiENHLDKTPSEYIQWRFQTGEDRETMDRANRQINESDTEMMNKIFKIEGTP 797
                 689************999655543333.33333322222220011213333334444445555555555544555555555555555555555555555 PP

                 E-HHHHHHHHHCTT-STT................................................................................. CS
                 xxxxxxxxxxxxxxxxxx................................................................................. RF
       SMC_N 118 vtkkevsellesagiske................................................................................. 135
                  + +                                                                                               
  CCD25857.2 798 RRVAG------------Ihsrrkfkntyeyecsfllgenigmkserwvpmmsvdnawlprgelveshsklvaevdmkealasgqfraltrkeieehcsm 884
                 55444............044444444566799******************************************************************* PP

                 ..............CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-.SCE CS
                 ..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
       SMC_N 136 ..............lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemleka.dkl 208
                                LSgG+k    + L++A    ++  l +lDe    LD     ++++ lk+ +    +i+i++++e++++  +++
  CCD25857.2 885 lgldselvshsrirGLSGGQK----VKLVLAAGTWQKPHLIVLDEPTNYLDRDSLGALSKALKAFE--GGVIIITHSAEFTKDLtEEV 966
                 ********************9....799***********************************999..99*********999873444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       9.9   3.3e+03      93      93 ..     182     182 ..      15     218 .. 0.63
   2 !   21.2   0.0   9.7e-07   0.00032      24      86 ..     464     523 ..     450     572 .. 0.77
   3 !   20.1   0.0   2.2e-06   0.00074      23     104 ..     701     785 ..     687     820 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 9.9
      AAA_23  93 e 93 
                 +
  CCD25857.2 182 T 182
                 1 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 9.7e-07
      AAA_23  24 ItGpNGaGKTTildAiklaLygetprlsrks..grgfeksdveiesegkvkayveltfenkdgry 86 
                 ++GpNGaGK+T+++A+  +  +   ++++++  ++ ++++d+   + +++ ++v++ fe+  g++
  CCD25857.2 464 LCGPNGAGKSTLMRAMANGQVE---GFPTQDecKTVYVEHDID--NTHSDTSVVDFVFESGVGER 523
                 79*************9876665...444444226666677766..44567777999999877765 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 2.2e-06
      AAA_23  23 lItGpNGaGKTTildAiklaLygetprlsrks...grgfeksdve...iesegkvkayveltfenkdgry.....trsiererelskkkgktt 104
                 +++GpNGaGK+T+++ ++  L   t++  + +      ++++ ++    + +++ ++y++ +f++  +r+     +        ++ ++++t 
  CCD25857.2 701 AVIGPNGAGKSTLINVLTGELLPTTGDVYTHEncrIAYIKQHAFAhieNHLDKTPSEYIQWRFQTGEDREtmdraN--------RQINESDTE 785
                 567************9997766555544444344433455555543213344788888999998888865433332........333333332 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.42   1.4e+02      68     112 ..     238     290 ..     187     307 .. 0.77
   2 !   17.9   0.0   8.5e-06    0.0028      10     128 ..     464     599 ..     457     606 .. 0.59
   3 !    9.9   0.0    0.0026      0.85       8      29 ..     700     721 ..     697     787 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.42
      AAA_22  68 lkaerlsseellealeqalrarav....ielliiDEaqhlr..s...eealeeL 112
                   + +++++ ++ +l++ l++r++    ++++iiD++ +l   +   +  l++L
  CCD25857.2 238 DVT-PATLSIMVPLLNRGLQERDTsikrKSAVIIDNMCKLVedPqivAPFLNDL 290
                 333.78999999*************************88865414556666665 PP

  == domain 2  score: 17.9 bits;  conditional E-value: 8.5e-06
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee................erpevvfvtlpsstsskdllrellralglelka.....................e 71 
                 ++G+ G+GK+tl+r +++  +e  ++++                 + +vv               +++ + g++  +                     +
  CCD25857.2 464 LCGPNGAGKSTLMRAMANGQVEG-FPTQdecktvyvehdidnthSDTSVV---------------DFVFESGVGERDaiisklnefgfsndavnqpisS 546
                 8******************8654.55553444444444444443333333...............2222222222223554444455545555553332 PP

      AAA_22  72 rlsseellealeqalrarav...ielliiDEaqh.lrseealeeLrsllnlsrkgvqliLv 128
                       +  al++a     v     +l++DE  + l    ++ +L++ ln   +g++ i+v
  CCD25857.2 547 LSGGWKMKLALARA-----VlknADILLLDEPTNhL-DTVNVAWLVDYLN--NCGITSIIV 599
                 22222333333333.....23456699999988879.8999999999999..888877765 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.0026
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++v+G+ G+GK+tl++ l+ +l
  CCD25857.2 700 IAVIGPNGAGKSTLINVLTGEL 721
                 79*************9988776 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.6e-05     0.012      15      43 ..     452     480 ..     448     481 .. 0.79
   2 !   17.0   0.1   1.1e-05    0.0036      15      49 ..     690     724 ..     686     729 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 3.6e-05
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDAiq 43 
                 +++++++   + l Gp+G+GKSTl+ A++
  CCD25857.2 452 TQLRLKRGRRYGLCGPNGAGKSTLMRAMA 480
                 5677774448889************9986 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 1.1e-05
      AAA_29  15 htieidlkgatlltGpsGsGKSTllDAiqalLvpa 49 
                  t++ +l++ + ++Gp+G+GKSTl+  ++  L+p+
  CCD25857.2 690 VTFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 724
                 566777777899*************7776666665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0019      0.62      99     122 ..     458     482 ..     437     515 .. 0.82
   2 !   20.1   0.0   1.4e-06   0.00047      89     133 ..     686     731 ..     660     735 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0019
                  T.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  99 d.ktsvlvGqSGvGKStLinallpe 122
                    +   l+G+ G+GKStL+ a+++ 
   CCD25857.2 458 RgRRYGLCGPNGAGKSTLMRAMANG 482
                  4477789************999875 PP

  == domain 2  score: 20.1 bits;  conditional E-value: 1.4e-06
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelelktgevsek 133
                  ++++++ +++  + ++++G+ G+GKStLin+l++el   tg+v ++
   CCD25857.2 686 QVSDVTFQCSLsSRIAVIGPNGAGKSTLINVLTGELLPTTGDVYTH 731
                  555666665554667889*****************99999998765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00041      0.13       4      45 ..     464     508 ..     461     525 .. 0.83
   2 !   18.2   0.0     7e-06    0.0023       1      85 [.     699     789 ..     699     824 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00041
      AAA_28   4 itGgestGKTtlleaLaar...gypvvpEaareileeklakgeda 45 
                 + G+ ++GK+tl++a+a+    g+p+  E  + ++e+  ++++ +
  CCD25857.2 464 LCGPNGAGKSTLMRAMANGqveGFPTQDECKTVYVEHDIDNTHSD 508
                 78***************755789******9999999887766655 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 7e-06
      AAA_28   1 kivitGgestGKTtlleaLaar.....gypvvpEaar.eileekl.akgedalpwvedllafaervleeqleeeaaaaankvlfcDrglldt 85 
                 +i+++G+ ++GK+tl++ L+ +     g ++ +E  r  ++++++ a  e++l+++     ++ r+   + +e  ++a++++  +D+++++ 
  CCD25857.2 699 RIAVIGPNGAGKSTLINVLTGEllpttGDVYTHENCRiAYIKQHAfAHIENHLDKT-PSEYIQWRFQTGEDRETMDRANRQINESDTEMMNK 789
                 79******************444554465555666662677777766667999998.55555555555555666667788888888888775 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0017      0.58       3      24 ..     463     484 ..     461     526 .. 0.76
   2 !   18.1   0.0   6.6e-06    0.0022       1      23 [.     699     721 ..     699     744 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0017
                 EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgeka 24 
                 ++ G   +GKStL++a+ + ++
  CCD25857.2 463 GLCGPNGAGKSTLMRAMANGQV 484
                 78999************99644 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 6.6e-06
                 EEEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgek 23 
                 ++a++G   +GKStLin ltge 
  CCD25857.2 699 RIAVIGPNGAGKSTLINVLTGEL 721
                 69******************984 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       1.4   4.7e+02       3      20 ..     464     481 ..     463     497 .. 0.83
   2 !   23.0   0.0     2e-07   6.6e-05       1      77 [.     700     784 ..     700     855 .. 0.71

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 1.4
                 EEEBTTTTHHHHHHHHHT CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlg 20 
                 ++G   +GKS+++ a+  
  CCD25857.2 464 LCGPNGAGKSTLMRAMAN 481
                 68999*******998876 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2e-07
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C........CS...SSEEEE..T-EB--CHHHHHHHHHHHH CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas........eravkeelkek..ekkledfsevreeiekete 77 
                 iav+G   +GKS+++n L+ge  lp+   + T   + + + ++            + ++ ++++ +   ++ e +++ +++i+++  
  CCD25857.2 700 IAVIGPNGAGKSTLINVLTGEL-LPTTGDVYTHENCRIAYIKQHAFAhienhldkTPSEYIQWR-FqtGEDRETMDRANRQINESDT 784
                 89******************98.*****************766553333222221111111111.1233333333333333333333 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0019      0.63       3      36 ..     464     498 ..     463     512 .. 0.71
   2 !   12.5   0.0   0.00043      0.14       2      40 ..     701     735 ..     700     756 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0019
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl.klkkkdsvys 36 
                   l+Gp+g GKStl++ +a+   + +  +++ ++vy+
    CCD25857.2 464 LCGPNGAGKSTLMRAMANGQVEGFpTQDECKTVYV 498
                   79*************99876665534444455555 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00043
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkklklkkkdsvys.rnpe 40 
                    + Gp+g GKStl++ L+ +ll     +++++vy+  n++
    CCD25857.2 701 AVIGPNGAGKSTLINVLTGELL-----PTTGDVYThENCR 735
                   689*************999998.....8889999966665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0036       1.2       3      44 ..     464     505 ..     463     571 .. 0.79
   2 !   11.0   0.0    0.0014      0.46       1      67 [.     700     782 ..     700     800 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.0036
      AAA_18   3 ltGtpGvGKttlakeLskrlgf.gvnlrdvakenglllevdpe 44 
                 l+G+ G+GK+tl ++ ++  ++ g+  +d +k  + + + d+ 
  CCD25857.2 464 LCGPNGAGKSTLMRAMANG-QVeGFPTQDECKTVYVEHDIDNT 505
                 8**************9776.45666666666665555555554 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0014
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf..............gvnlrdvakenglllevdpe.aldeskrldedkldklldaleen 67 
                 I++ G+ G+GK+tl + L  +l                   ++ + + en+l  +  ++ +++ +  +d++ +d++ ++++e+
  CCD25857.2 700 IAVIGPNGAGKSTLINVLTGELlPTtgdvythencriayIKQHAFAHIENHLDKTPSEYiQWRFQTGEDRETMDRANRQINES 782
                 89****************55541113333333333444333333333333333333333666666666666666666666665 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0013      0.44       4      20 ..     464     480 ..     463     519 .. 0.76
   2 !    9.7   0.0    0.0028      0.91       3      54 ..     701     764 ..     700     784 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.0013
      AAA_33   4 lvGlpGsGKstlaerll 20 
                 l+G++G+GKstl + ++
  CCD25857.2 464 LCGPNGAGKSTLMRAMA 480
                 7*************987 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0028
      AAA_33   3 llvGlpGsGKstlaerllkklg...avllssdt.........lrrrlfgtdqqsktdytrvldr 54 
                  ++G++G+GKstl+  l  +l    + + +  +         ++  +++  ++++++y++++++
  CCD25857.2 701 AVIGPNGAGKSTLINVLTGELLpttGDVYTHENcriayikqhAFAHIENHLDKTPSEYIQWRFQ 764
                 589***********99976665344444444445555544444555555666677777777766 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.49   1.6e+02      78     120 ..     202     244 ..     184     250 .. 0.82
   2 !    9.0   0.0    0.0055       1.8       3      21 ..     464     482 ..     462     572 .. 0.81
   3 ?    6.1   0.0     0.043        14       3      22 ..     702     721 ..     700     768 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.49
                 CCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGGSTHHHH CS
         AAA  78 eseeeervvnqLlteldgvkkkeskvivigatnrpdkldpall 120
                 e+++ e  ++qL++ + + ++  ++v  +gat+ +++++pa l
  CCD25857.2 202 ENKDIEIFIPQLINCIANPSNVPETVHALGATTFVSDVTPATL 244
                 5666667789*************************99999987 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0055
                 EESSTTSSHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavake 21 
                 l+Gp G GK++l++a+a+ 
  CCD25857.2 464 LCGPNGAGKSTLMRAMANG 482
                 89***************97 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.043
                 EESSTTSSHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel 22 
                 ++Gp G GK++l++ +  el
  CCD25857.2 702 VIGPNGAGKSTLINVLTGEL 721
                 89************999997 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0021      0.68      15      50 ..     445     480 ..     434     486 .. 0.87
   2 !   10.1   0.0   0.00088      0.29      13      54 ..     680     722 ..     666     728 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0021
                 HHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB  15 akellerllakaGraqvvGltGvPGaGkstlvealg 50 
                 ak ll++   +  r ++ Gl G  GaGkstl+ a++
  CCD25857.2 445 AKILLNKTQLRLKRGRRYGLCGPNGAGKSTLMRAMA 480
                 78899999999999*****************99986 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00088
                 H.HHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHH CS
        MeaB  13 p.eakellerllakaGraqvvGltGvPGaGkstlvealglelr 54 
                 p ++k  ++ ++ ++  + ++ + G  GaGkstl++ l+ el 
  CCD25857.2 680 PgTSKPQVSDVTFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 722
                 35677788889999999********************998875 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       1.3   4.2e+02     136     177 ..      41      79 ..      11      85 .. 0.80
   2 ?    0.3   0.0       1.7   5.8e+02      53      84 ..      93     128 ..      86     157 .. 0.77
   3 ?    6.7   0.0     0.018         6      48      70 ..     462     484 ..     446     534 .. 0.72
   4 ?    7.4   0.0     0.011       3.6      50      73 ..     702     725 ..     688     802 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 1.3
       Rad17 136 ilvedlPnkfyrdsdalrevirkylrssealplilviteies 177
                 i+  dlP+kf+   d+l++ i    +ss+al  i+ i++  +
  CCD25857.2  41 IIEHDLPQKFF---DKLHKAIIDKKTSSNALDAIIYIANQTN 79 
                 55679***998...5678888899999999988888876555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 1.7
       Rad17  53 PsGCgks....tvvkvLskelgiklrewlnpvslke 84 
                 Ps C+k+      +++++k   + + + +np+  k 
  CCD25857.2  93 PSICAKAgdkdSSIQEIAKRALFAVVNAINPIATKA 128
                 6777654222279******************98665 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.018
       Rad17  48 LLisGPsGCgkstvvkvLskelg 70 
                   ++GP G gkst ++ ++   +
  CCD25857.2 462 YGLCGPNGAGKSTLMRAMANGQV 484
                 568*************9986544 PP

  == domain 4  score: 7.4 bits;  conditional E-value: 0.011
       Rad17  50 isGPsGCgkstvvkvLskelgikl 73 
                 + GP G gkst ++vL+ el +  
  CCD25857.2 702 VIGPNGAGKSTLINVLTGELLPTT 725
                 67***************9987765 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.54   1.8e+02     111     173 ..     140     202 ..     117     230 .. 0.68
   2 ?    2.6   0.0      0.36   1.2e+02      24      48 ..     460     484 ..     452     496 .. 0.82
   3 !   10.6   0.0    0.0013      0.43      22      48 ..     696     722 ..     683     728 .. 0.89
   4 ?   -0.5   0.1       3.2   1.1e+03     147     205 ..     748     802 ..     738     807 .. 0.72

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.54
       DUF87 111 kpaaavqrsvleealdqakakeekeklssdepveklleelkkekeelrklknqaiarlldkle 173
                 +++++++ ++le++   ++ ++e+  l   e+++ l e+++++k+e+++ ++++i +  +++e
  CCD25857.2 140 TNKWQEKIAILESIAILVDVAKEQIALRMPELIPILSESMWDTKKEVKETATKTITKATETIE 202
                 566666777777666655557788888888888888888886666666666666555555544 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.36
       DUF87  24 rHlAilgsTGsGKSntvavLleell 48 
                 r+ +  g  G+GKS++++ + +  +
  CCD25857.2 460 RRYGLCGPNGAGKSTLMRAMANGQV 484
                 566777888*********9988766 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.0013
       DUF87  22 vtrHlAilgsTGsGKSntvavLleell 48 
                 ++ ++A++g  G+GKS+++ vL  ell
  CCD25857.2 696 LSSRIAVIGPNGAGKSTLINVLTGELL 722
                 5899******************99997 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 3.2
       DUF87 147 leelkkekeelrklknqaiarlldkledllrkggsfsnsstdliallleklekegkiti 205
                 +++l     + +++  q + +  +++e ++r ++++ +s+t+++++++++++ +++++ 
  CCD25857.2 748 ENHLD----KTPSEYIQWRFQTGEDRETMDRANRQINESDTEMMNKIFKIEGTPRRVAG 802
                 55555....55555556666666778888888888888888899999888888888765 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00096      0.32      31      48 ..     464     481 ..     447     502 .. 0.79
   2 ?    6.8   0.0     0.014       4.6      30      46 ..     701     717 ..     687     732 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00096
      AAA_27  31 iyGpNEAGKstalrAisd 48 
                 + GpN AGKst++rA+ +
  CCD25857.2 464 LCGPNGAGKSTLMRAMAN 481
                 47*************975 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.014
      AAA_27  30 liyGpNEAGKstalrAi 46 
                  ++GpN AGKst+++ +
  CCD25857.2 701 AVIGPNGAGKSTLINVL 717
                 589*********98766 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   1.1      0.32   1.1e+02     129     278 ..      26     208 ..       3     263 .. 0.66
   2 !    7.8   0.0    0.0069       2.3      28      43 ..     464     479 ..     449     519 .. 0.80
   3 !   11.1   0.0   0.00072      0.24      21     115 ..     696     793 ..     690     819 .. 0.65
   4 ?   -1.7   0.0       5.7   1.9e+03     322     366 ..     916     956 ..     909     959 .. 0.70

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.32
      AAA_15 129 nelsdekisvekkkskkelpkekeeklekekeelkid..kedlkklikkleeslkkee.................................elknvlks 192
                  +++++  s + + ++ e++  ++++ ++ k+ ++++  ++ l+ +i+ + ++++ +                                   + n ++ 
  CCD25857.2  26 RDDICSQLSSFLNGNIIEHDLPQKFFDKLHKAIIDKKtsSNALDAIIY-IANQTNLSPsvepfivstvpsicakagdkdssiqeiakralfAVVNAINP 123
                 445555555666666666666666666666666655544666666666.44444444468888888888888888777777777777777766666666 PP

      AAA_15 193 aiiklllisakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelkkilkkkidkikkfnykg 278
                  ++k ll +  +  s++++ +++ ++ + +  +++  ++e+  +++ e ++ + e+  +++k+++e ++k+++k  ++i++  + +
  CCD25857.2 124 IATKALLPHLINCLSSTNKWQEKIAILESIAILVDV-AKEQIALRMPELIPILSESMWDTKKEVKETATKTITKATETIENKDIEI 208
                 777777777777777777666666666777666663.4555566677777777777777777777776677777666665554444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0069
      AAA_15  28 liGkNnsGKSsileal 43 
                 l+G+N++GKS++++a+
  CCD25857.2 464 LCGPNGAGKSTLMRAM 479
                 8*************98 PP

  == domain 3  score: 11.1 bits;  conditional E-value: 0.00072
      AAA_15  21 lseeltvliGkNnsGKSsileal..dlFlnnkekkn......kkvikiek.edleifeniseskdikIdvefaekekakeyektlkskekkkadlllkk 110
                 ls+    +iG+N++GKS+++++l  +l+ ++    +      +   +i++  + +i+++ ++  +  I+  f  ++ ++ +    ++++++++d+++++
  CCD25857.2 696 LSS-RIAVIGPNGAGKSTLINVLtgELLPTTG---DvythenCRIAYIKQhAFAHIENHLDKTPSEYIQWRF--QTGEDRETMDRANRQINESDTEMMN 788
                 555.6789***************333444433...1444667334444440455566666777777777777..4333333344445566666667777 PP

      AAA_15 111 kesdl 115
                 k++++
  CCD25857.2 789 KIFKI 793
                 76665 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 5.7
      AAA_15 322 eknvilliEEPEahLHpqaqkvlikllkelandnktQviitTHSp 366
                 +k+++++++EP ++L  +    l k+lk    ++   vii THS 
  CCD25857.2 916 QKPHLIVLDEPTNYLDRDSLGALSKALKAF--EG--GVIIITHSA 956
                 688999999999998666666666666543..22..377777876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.047        15      29      46 ..     464     481 ..     448     555 .. 0.81
   2 !   10.9   0.0    0.0013      0.45      26      88 ..     699     750 ..     691     797 .. 0.66

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.047
      AAA_16  29 lsGesGvGKsslvrellr 46 
                 l G+ G GKs+l+r+ ++
  CCD25857.2 464 LCGPNGAGKSTLMRAMAN 481
                 77***********99885 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.0013
      AAA_16  26 lvllsGesGvGKsslvrellralekd.ggiflrgkcdqlesaipysalaqalareellrqllde 88 
                  + ++G+ G GKs+l++ l  +l  + g +++ ++c+             ++++ + ++ ++++
  CCD25857.2 699 RIAVIGPNGAGKSTLINVLTGELLPTtGDVYTHENCRIA-----------YIKQ-HAFAHIENH 750
                 5789*************9998887773212233333333...........3322.444444444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.014       4.7       2      22 ..     459     479 ..     458     525 .. 0.83
   2 !    8.3   0.0    0.0051       1.7       3      22 ..     698     717 ..     696     727 .. 0.86
   3 ?   -1.6   0.0       5.8   1.9e+03     112     153 ..     936     972 ..     932     978 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.014
      AAA_24   2 klkiliyGpsgiGKTtlakel 22 
                 ++++ + Gp+g+GK+tl++ +
  CCD25857.2 459 GRRYGLCGPNGAGKSTLMRAM 479
                 578899************998 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0051
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                  +i+++Gp+g+GK+tl++ l
  CCD25857.2 698 SRIAVIGPNGAGKSTLINVL 717
                 589*************9866 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 5.8
      AAA_24 112 rrllkklqelrknvifiahektrkdedpegeakytrlepklg 153
                 + l k+l+++ + vi+i h+ + + + +e+      ++ k+g
  CCD25857.2 936 GALSKALKAFEGGVIIITHSAEFTKDLTEEV-----WAVKEG 972
                 567788999999*******999998887655.....555544 PP

>> SbcCD_C  Putative exonuclease SbcCD, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.069        23      26      89 ..     540     590 ..     527     591 .. 0.74
   2 !   10.1   0.0    0.0022      0.73      26      89 ..     893     943 ..     870     944 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.069
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                 +++ +++lSGG k   + lala   +a++++        ++++LDE  + lD  ++a l+++l+
  CCD25857.2 540 VNQPISSLSGGWK---MKLALA---RAVLKN-------ADILLLDEPTNHLDTVNVAWLVDYLN 590
                 5666777777777...555555...333444.......479*************9999998876 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0022
     SbcCD_C  26 lsrssgtlSGGekqflaylalaaalaalyssaegrepalrlvfLDEAFsklDeesiatllelle 89 
                  ++++++lSGG+k   + l+laa+     ++      ++ l++LDE  + lD +s+ +l ++l+
  CCD25857.2 893 SHSRIRGLSGGQK---VKLVLAAG----TWQ------KPHLIVLDEPTNYLDRDSLGALSKALK 943
                 5788899999999...67777744....333......689****************99999886 PP

>> AAA_13  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.011       3.8      23      51 ..     466     493 ..     453     524 .. 0.75
   2 ?    5.1   0.0     0.022       7.3      22     136 ..     703     816 ..     694     824 .. 0.57
   3 ?    1.6   0.0      0.26        85     525     581 ..     916     966 ..     906     983 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.011
      AAA_13  23 GwNGaGKTtLSrllrslelgetepkfang 51 
                 G NGaGK+tL r++++ + +   ++  ++
  CCD25857.2 466 GPNGAGKSTLMRAMANGQVEGFPTQ-DEC 493
                 99*************9876654443.344 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.022
      AAA_13  22 YGwNGaGKTtLSrllrslelgetepkfangsieitngeeldirVfNrdFveenlseq..gelkpvftLGeesie...kqekieklkkeikkleekleaa 115
                  G NGaGK+tL ++l    l  t + +++++ +i+     + + f  + +e++l++   ++++  f  Ge+      ++++i++ ++e+ ++  k+e +
  CCD25857.2 703 IGPNGAGKSTLINVLTGELLPTTGDVYTHENCRIAY---IKQHAF--AHIENHLDKTpsEYIQWRFQTGEDRETmdrANRQINESDTEMMNKIFKIEGT 796
                 49************9986555555555555554422...233334..4566666622324466666666554321114455666666666666666665 PP

      AAA_13 116 eaqlqkaekekkklekelede 136
                  + +   +++ +k+++++e+e
  CCD25857.2 797 PRRVAGIHSR-RKFKNTYEYE 816
                 5555555555.5555555555 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.26
      AAA_13 525 gkdkivviDDPvSSLDsnslfivfsliksrllkkkkakQlfiLTHnleffkevkknt 581
                 +k   +v+D P   LD +sl   +  +k+          ++i TH+ ef k +++++
  CCD25857.2 916 QKPHLIVLDEPTNYLDRDSLGALSKALKAFE------GGVIIITHSAEFTKDLTEEV 966
                 6788899999999999999987777777665......78************999864 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       6.5   2.2e+03      49      85 ..      79     115 ..      67     135 .. 0.83
   2 !    9.4   0.0    0.0029      0.95       5      64 ..     464     521 ..     460     592 .. 0.74
   3 ?    5.8   0.0     0.036        12       2      21 ..     699     718 ..     698     760 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 6.5
                 -...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEE CS
       NACHT  49 gnarsladllfsqlpepaapvsevwavllelperlLl 85 
                 + ++s+  +++s  p + a+   + + ++e+++r+L+
  CCD25857.2  79 NLSPSVEPFIVSTVPSICAKAGDKDSSIQEIAKRALF 115
                 3447899999999999999999999999******998 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.0029
                 EEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS CS
       NACHT   5 lqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpe 64 
                 l G++G GK+tL++ +a    eg + q++ +   +++   +++++++ s+ d++f+ +  
  CCD25857.2 464 LCGPNGAGKSTLMRAMANGQVEGFPTQDE-CKTVYVEHDIDNTHSDT-SVVDFVFESGVG 521
                 679******************99999998.66666677777777777.888888776554 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.036
                 CEEEEC-TTTCHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkla 21 
                  +++ G++G GK+tL+  l 
  CCD25857.2 699 RIAVIGPNGAGKSTLINVLT 718
                 5899***********98776 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.19        64       6      32 ..     464     490 ..     460     504 .. 0.85
   2 !   11.8   0.0   0.00046      0.15       2      51 ..     698     762 ..     697     772 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.19
   PduV-EutP   6 liGkvgsGKttLtqalkgeelkYkktq 32 
                 l G+ g+GK tL++a+ + +++   tq
  CCD25857.2 464 LCGPNGAGKSTLMRAMANGQVEGFPTQ 490
                 789*************99998877777 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00046
   PduV-EutP   2 kkilliGkvgsGKttLtqalkg..............eelkYkktqaiefsdeviD.tPGeylenr 51 
                 ++i +iG+ g+GK tL + l+g               ++ Y k  a  + ++ +D tP ey++ r
  CCD25857.2 698 SRIAVIGPNGAGKSTLINVLTGellpttgdvythenCRIAYIKQHAFAHIENHLDkTPSEYIQWR 762
                 6899******************99999999999987789**********99999989****9977 PP

>> ParcG  Parkin co-regulated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.88   2.9e+02      81     135 ..      91     146 ..      61     164 .. 0.72
   2 ?    5.5   0.0     0.049        16      34      85 ..     166     217 ..     151     226 .. 0.88
   3 ?    6.8   0.0      0.02       6.5      38     114 ..     246     324 ..     226     334 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.88
       ParcG  81 lilplkeaLntrdeeviesaLkvlqklvka.seligeaLvpyyrqlLpvlnlfknk 135
                  +  + +    +d+++ e a ++l  +v+a +++  +aL p++ + L  +n +++k
  CCD25857.2  91 TVPSICAKAGDKDSSIQEIAKRALFAVVNAiNPIATKALLPHLINCLSSTNKWQEK 146
                 55555555566777777777777777777615566789*****9999999977665 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.049
       ParcG  34 LdydalLplffdGlretkhpyrflategikdlleaageekilpvlpklilpl 85 
                 L + +l+p++ + + +tk+  +  at++i++ +e+  ++ i   +p+li  +
  CCD25857.2 166 LRMPELIPILSESMWDTKKEVKETATKTITKATETIENKDIEIFIPQLINCI 217
                 6667899****************************999999999****9876 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.02
       ParcG  38 alLplffdGlretkhpyrflategikdllea.ageekilpvlpklilplkeaLnt.rdeeviesaLkvlqklvkaseli 114
                  ++pl+  Gl+e +   +  +   i ++ +  +  + + p l+ l  +lk+++++  d+e  e++L++l+ l +++++ 
  CCD25857.2 246 IMVPLLNRGLQERDTSIKRKSAVIIDNMCKLvEDPQIVAPFLNDLLPGLKNNFSNiADPEAREVTLRALKTLRRVGNVA 324
                 4678888999999999988888888888777556777889************975389999999*****9997777665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.023       7.7       6      43 ..     463     505 ..     459     528 .. 0.70
   2 ?    6.4   0.0     0.026       8.5       5      37 ..     700     740 ..     697     773 .. 0.70
   3 ?   -1.7   0.0       8.2   2.7e+03      63     101 ..     916     956 ..     872     964 .. 0.65

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.023
      AAA_14   6 vitGaRrvGKTtllkqlikell.....vkkesilyinldderd 43 
                  + G+  +GK+tl++ +++ +       ++ +++y++ d +++
  CCD25857.2 463 GLCGPNGAGKSTLMRAMANGQVegfptQDECKTVYVEHDIDNT 505
                 57899*************9999998765666666666655443 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.026
      AAA_14   5 lvitGaRrvGKTtllkqlikell........vkkesilyin 37 
                 +++ G+  +GK+tl++ l  ell         ++ +i yi+
  CCD25857.2 700 IAVIGPNGAGKSTLINVLTGELLpttgdvytHENCRIAYIK 740
                 6799**************99999877776444444444444 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 8.2
      AAA_14  63 ekktylflDEiqev..pewekalkslvdegknldvivtGSn 101
                 +k ++++lDE  ++  ++   al + ++  + + +i+t S+
  CCD25857.2 916 QKPHLIVLDEPTNYldRDSLGALSKALKAFEGGVIIITHSA 956
                 5788999**99988554445555555555556666666665 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0076       2.5       4      46 ..     463     512 ..     461     532 .. 0.77
   2 ?    5.1   0.2     0.045        15       4      21 ..     701     718 ..     698     739 .. 0.86
   3 ?   -1.0   0.0       3.5   1.2e+03     127     154 ..     767     794 ..     756     809 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0076
                 EEEESTTCCHHHHHHHHH.......CT--SS-EEEEESS-SSCHCCCCCC CS
        cobW   4 vltGflGsGKTtLlnhll.......enraglklavivNefgevsiDaell 46 
                 +l+G+ G+GK+tL++++          +++ k+  ++ ++ +++ D +++
  CCD25857.2 463 GLCGPNGAGKSTLMRAMAngqvegfPTQDECKTVYVEHDIDNTHSDTSVV 512
                 689*************9977776665566677777777777777777666 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.045
                 EEEESTTCCHHHHHHHHH CS
        cobW   4 vltGflGsGKTtLlnhll 21 
                  + G+ G+GK+tL+n l+
  CCD25857.2 701 AVIGPNGAGKSTLINVLT 718
                 6889**********9876 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 3.5
                 CHCCHHHHHHHHHHTSSEEEEE-HHHHC CS
        cobW 127 eeekieekaedqlaaadllvlnKtDlld 154
                 e++++ + a++q++ +d+ ++nK+  ++
  CCD25857.2 767 EDRETMDRANRQINESDTEMMNKIFKIE 794
                 5677888999*************96655 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1     0.015       5.1      22      40 ..     463     481 ..     452     489 .. 0.83
   2 ?    5.9   0.0     0.028       9.2      21      39 ..     700     718 ..     688     735 .. 0.83
   3 ?   -1.6   0.0       5.5   1.8e+03      85     120 ..     914     950 ..     884     966 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.015
      AAA_30  22 vltGpAGtGKttalkalre 40 
                  l Gp G+GK+t+++a+++
  CCD25857.2 463 GLCGPNGAGKSTLMRAMAN 481
                 578************9875 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.028
      AAA_30  21 avltGpAGtGKttalkalr 39 
                  ++ Gp G+GK+t++++l+
  CCD25857.2 700 IAVIGPNGAGKSTLINVLT 718
                 4689***********9985 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 5.5
      AAA_30  85 rlepgtllivDEagmv.dtkqlaallkaaekagakvi 120
                 ++++ +l++ DE     d ++l al ka+++ +  vi
  CCD25857.2 914 TWQKPHLIVLDEPTNYlDRDSLGALSKALKAFEGGVI 950
                 4566688888885543377777777777766443333 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.6   4.2e-05     0.014      22     205 ..      24     199 ..       9     213 .. 0.82
   2 ?   -0.5   0.0       2.2   7.3e+02      88     159 ..     201     275 ..     192     282 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.2e-05
     CLASP_N  22 daReknilklrslikgn.vpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeq..ldpmveillptLlkllgdtKkiisqnanqa 117
                 d+R + + +l s ++gn + +d ++++++ l+   +ai+++     t  ss+++  +  +a q + +  ++p++ +++p++    gd+   i + a+ a
  CCD25857.2  24 DTRDDICSQLSSFLNGNiIEHDLPQKFFDKLH---KAIIDK----KT--SSNALDAIIYIANQTNLSpsVEPFIVSTVPSICAKAGDKDSSIQEIAKRA 113
                 68999999************************...555554....44..58888999899887654434****************************99 PP

     CLASP_N 118 laallsnas.fspri..lqvlsvalqdKnvqpReysaiwLkilltrfeshkskleasllldliekslkkgleDanptVRetaRstfweffk 205
                 l a++++++ + ++    ++++++++    q ++  ++ ++il++  +   +++  ++   ++ ++l + + D + +V+eta +t+ + ++
  CCD25857.2 114 LFAVVNAINpIATKAllPHLINCLSSTNKWQEKIAILESIAILVDVAK---EQIALRM--PELIPILSESMWDTKKEVKETATKTITKATE 199
                 999999998855554445555555555556899999999999999988...5555555..7788******************999987665 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.2
     CLASP_N  88 ldpm.veillptLlkllgdtKkiisqnanqalaallsnas.fspri.lqvlsvalqdKnvqpReysaiwLkillt 159
                 +++  +ei++p L++++++  ++  +  +   ++++s+++  +  i + +l+ +lq++  +++  sa  + ++ +
  CCD25857.2 201 IENKdIEIFIPQLINCIANPSNVPETVHALGATTFVSDVTpATLSImVPLLNRGLQERDTSIKRKSAVIIDNMCK 275
                 555557888888888888888887777666667777766645556668889999999999999999999888876 PP

>> MMS19_C  RNAPII transcription regulator C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.7      0.11        36       3     108 ..      50     145 ..      48     160 .. 0.63
   2 !    7.2   0.5    0.0069       2.3     334     421 ..     130     214 ..     127     216 .. 0.67
   3 !    7.5   0.0    0.0057       1.9     371     420 ..     243     294 ..     237     297 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.11
     MMS19_C   3 llatLpdsaseasasayervLeaLaelssekqlfetlvirllnkldlvlksnes.saayahailstllkllekkqtdlekeellnsyydrivprlltlv 100
                 ++++L +   ++++s  +++L+a+  ++++ +l  ++ + +++ +  ++ ++ +  +  + +  ++l +++++ +            ++ ++p l++++
  CCD25857.2  50 FFDKLHKAIIDKKTS--SNALDAIIYIANQTNLSPSVEPFIVSTVPSICAKAGDkDSSIQEIAKRALFAVVNAIN---------PIATKALLPHLINCL 137
                 666666665555544..5788888888888888888888888888777777777655555566777777777766.........556667777777776 PP

     MMS19_C 101 vsaastss 108
                 +s  ++++
  CCD25857.2 138 SSTNKWQE 145
                 66666544 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0069
     MMS19_C 334 lpklvegfks.sdsetkenyLvALshllkhvPkslllpeLptLlPlLlqaLdlpdaevkastLetlksileespslvsehlssLvprLL 421
                 lp l++  +s ++ ++k + L +++ +l +v k+ +   +p+L+P+L +++  +++evk  + +t++ + e   ++ ++ ++  +p+L+
  CCD25857.2 130 LPHLINCLSStNKWQEKIAILESIA-ILVDVAKEQIALRMPELIPILSESMWDTKKEVKETATKTITKATE---TIENKDIEIFIPQLI 214
                 5666666666455555566666665.455666777777899999999999988888899888888888887...355556666666665 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0057
     MMS19_C 371 eLptLlPlLlqaLdlpdaevkastLetlksile..espslvsehlssLvprL 420
                  L+ ++PlL ++L+  d+++k+ +  ++ ++++  e+p++v+++l++L p L
  CCD25857.2 243 TLSIMVPLLNRGLQERDTSIKRKSAVIIDNMCKlvEDPQIVAPFLNDLLPGL 294
                 68899********************************************998 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.4      0.52   1.7e+02     143     179 ..     170     210 ..     156     228 .. 0.76
   2 ?    3.5   0.0      0.11        35       9      33 ..     464     488 ..     463     514 .. 0.73
   3 !    7.1   0.0    0.0088       2.9       7      32 ..     700     725 ..     695     754 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.52
                 -EEEEESSGGGS-HHHHHHHHHH.H...HHHHHHTT----- CS
      Septin 143 nliPviaKaDtltkeElkefKkk.i...reeleeeeikiyk 179
                  liP+++ +   tk+E+ke+ +k i   +e++e+++i+i+ 
  CCD25857.2 170 ELIPILSESMWDTKKEVKETATKtItkaTETIENKDIEIFI 210
                 699******999****9876543131115789999999997 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.11
                 EEEBTTSSCCCCCCTTSSSS----- CS
      Septin   9 vvGesglGkttlintlfetdlieee 33 
                 ++G +g Gk+tl++++ + ++    
  CCD25857.2 464 LCGPNGAGKSTLMRAMANGQVEGFP 488
                 69**************998876653 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0088
                 EEEEEBTTSSCCCCCCTTSSSS---- CS
      Septin   7 lmvvGesglGkttlintlfetdliee 32 
                 + v+G +g Gk+tlin l  + l ++
  CCD25857.2 700 IAVIGPNGAGKSTLINVLTGELLPTT 725
                 779**************987766555 PP

>> UME  UME (NUC010) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   1.3   0.00013     0.042      17      98 ..     134     217 ..     124     219 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00013
         UME  17 lndshgkkslaekkraikaleeliklagssissalpqimacLqsalei..delrsaalsvWatllsnlededleplleqtfali 98 
                 +n  ++ ++ +ek+ +++++  l+ +a+++i+  +p ++ +L   + +  +e+++ a ++     +++e++d+e +++q++  i
  CCD25857.2 134 INCLSSTNKWQEKIAILESIAILVDVAKEQIALRMPELIPILSESMWDtkKEVKETATKTITKATETIENKDIEIFIPQLINCI 217
                 5555666678********************************999987678************************999988665 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.026       8.7       4      20 ..     465     481 ..     463     487 .. 0.90
   2 ?    6.1   0.0     0.024       7.9       1      22 [.     700     721 ..     700     789 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.026
                     E-STTSSHHHHHHHHHH CS
  Cytidylate_kin   4 DGPagsGKssvaralae 20 
                      GP g+GKs++ ra+a+
      CCD25857.2 465 CGPNGAGKSTLMRAMAN 481
                     59*************97 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.024
                     EEEE-STTSSHHHHHHHHHHHH CS
  Cytidylate_kin   1 iaiDGPagsGKssvaralaekl 22 
                     ia+ GP g+GKs++   l+ +l
      CCD25857.2 700 IAVIGPNGAGKSTLINVLTGEL 721
                     8999**********99998776 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.038        13       4      27 ..     464     487 ..     461     515 .. 0.75
   2 ?    6.2   0.0     0.034        11       1      21 [.     699     719 ..     699     758 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.038
                 EESSTTSSHHHHHHCHCT-CCC-E CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsek 27 
                 l+G +g+GK++l++ + +++++  
  CCD25857.2 464 LCGPNGAGKSTLMRAMANGQVEGF 487
                 79***************9998743 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.034
                 EEEEESSTTSSHHHHHHCHCT CS
         Roc   1 KvvlvGdsgvGKtsllkrfve 21 
                 ++ ++G +g+GK++l++ ++ 
  CCD25857.2 699 RIAVIGPNGAGKSTLINVLTG 719
                 5899************98875 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0      0.07        23      49      87 ..     115     153 ..      60     154 .. 0.71
   2 ?   11.0   0.0    0.0013      0.42      20      86 ..     117     193 ..      96     195 .. 0.67
   3 ?   10.9   0.0    0.0014      0.48       1      59 [.     130     198 ..     130     230 .. 0.79
   4 ?   -0.9   0.0       6.7   2.2e+03      12      28 ..     305     321 ..     291     335 .. 0.50

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.07
      HEAT_2  49 raaaeaLgaigdpealpaLkellddddddvvReaAaeaL 87 
                  a+++a+  i++++ lp+L  +l +++++  + a++e++
  CCD25857.2 115 FAVVNAINPIATKALLPHLINCLSSTNKWQEKIAILESI 153
                 3555555666899999*******9999999999888887 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.0013
      HEAT_2  20 airaLgrignpealpaLvelleded.pavRraaaeaLg..........aigdpealpaLkellddddddvvReaAaea 86 
                 ++ a+  i+++ +lp L+++l++++ +    a+ e+++          a++ pe +p+L e++ d++  +v+e A+++
  CCD25857.2 117 VVNAINPIATKALLPHLINCLSSTNkWQEKIAILESIAilvdvakeqiALRMPELIPILSESMWDTK-KEVKETATKT 193
                 4555556777788888888887666467777777888744444444222345888888888888654.4558888776 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.0014
      HEAT_2   1 ldaLlqalendpdpevrraairaLg..........rignpealpaLvellededpavRraaaeaLgaig 59 
                 l++L++ l++   ++ ++a++++++           ++ pe++p+L e + d++ +v ++a +++ +  
  CCD25857.2 130 LPHLINCLSSTNKWQEKIAILESIAilvdvakeqiALRMPELIPILSESMWDTKKEVKETATKTITKAT 198
                 689*****99******************999985556788**********************9998653 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 6.7
      HEAT_2  12 pdpevrraairaLgrig 28 
                 +  ev  +a+++L r g
  CCD25857.2 305 EAREVTLRALKTLRRVG 321
                 33344444444444332 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0056       1.9       1      33 [.     466     503 ..     466     509 .. 0.81
   2 ?    3.1   0.0      0.21        69       1      20 [.     704     723 ..     704     730 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0056
      CLP1_P   1 GpkdsGKSTlarlLlNyal.....rkgrkpvyvDlDvG 33 
                 Gp+ +GKSTl+r ++N  +     + + k+vyv+ D+ 
  CCD25857.2 466 GPNGAGKSTLMRAMANGQVegfptQDECKTVYVEHDID 503
                 899*************9996666445568889999985 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.21
      CLP1_P   1 GpkdsGKSTlarlLlNyalr 20 
                 Gp+ +GKSTl+ +L  ++l 
  CCD25857.2 704 GPNGAGKSTLINVLTGELLP 723
                 899***********999875 PP

>> Ploopntkinase3  P-loop Nucleotide Kinase3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0099       3.3       8      51 ..     464     508 ..     458     526 .. 0.77
   2 ?    4.6   0.0     0.084        28       6      26 ..     700     720 ..     697     736 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0099
  Ploopntkinase3   8 lvGqPGaGkstlmaeltkgfdrskveqee.etvphdvlvdrttGe 51 
                     l G  GaGkstlm ++++g +    +q+e +tv  ++ +d+t  +
      CCD25857.2 464 LCGPNGAGKSTLMRAMANGQVEGFPTQDEcKTVYVEHDIDNTHSD 508
                     77999************9988766555555777777777776654 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.084
  Ploopntkinase3   6 iylvGqPGaGkstlmaeltkg 26 
                     i ++G  GaGkstl+  lt  
      CCD25857.2 700 IAVIGPNGAGKSTLINVLTGE 720
                     6789************99965 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.5   1.8e+03     133     177 ..     175     225 ..      29     271 .. 0.60
   2 ?    4.9   0.0     0.036        12       7      58 ..     443     495 ..     438     536 .. 0.81
   3 ?    5.4   0.0     0.025       8.5      25     101 ..     699     775 ..     682     882 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 5.5
                 HHHHHC.CSHHHHHHHCCG.CCTT..--.TTHHHHHCT.HHHHCSTT---- CS
     G-alpha 133 dikaLw.ndpgiqelyerr.nkik..le.dnaeyFldd.leritspdYlpt 177
                   +++w +++ ++e+  +  +k    +e  ++e+F+ + ++ i++p+ +p+
  CCD25857.2 175 LSESMWdTKKEVKETATKTiTKATetIEnKDIEIFIPQlINCIANPSNVPE 225
                 344555334444444332222222222226666666654555666666665 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.036
                 XXXXXXXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS----HHHH.HC CS
     G-alpha   7 idkslkaerkarkkkrevkllllGqseSGKsTilkqlkllykkgfseeel.at 58 
                   +++  ++++ + kr  +  l+G ++ GKsT+++ +     +gf +++  +t
  CCD25857.2 443 YGAKILLNKTQLRLKRGRRYGLCGPNGAGKSTLMRAMANGQVEGFPTQDEcKT 495
                 556677777777778888999****************9887788877754344 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.025
                 EEEEEESTTSSHHHHHHHHH..HHCS--..--HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.......HHHC-SS-SCCC CS
     G-alpha  25 kllllGqseSGKsTilkqlk..llykkg..fseeelatwraviqlnivrsiktilealesleselsesfelqelkerldpl 101
                 ++ ++G ++ GKsT+++ l   ll + g  +++e++++  a+i ++   +i++ l++  s+ ++   +f+  e +e +d+ 
  CCD25857.2 699 RIAVIGPNGAGKSTLINVLTgeLLPTTGdvYTHENCRI--AYIKQHAFAHIENHLDKTPSEYIQW--RFQTGEDRETMDRA 775
                 8999***************9866665557777775666..7899999999999999988866666..45444444444433 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.018       5.9      51      72 ..     463     484 ..     451     499 .. 0.86
   2 ?    3.7   0.0      0.14        46      49      68 ..     699     718 ..     678     740 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.018
   IstB_IS21  51 vllGpsGvGKshlaialgveav 72 
                  l+Gp G+GKs l  a++   v
  CCD25857.2 463 GLCGPNGAGKSTLMRAMANGQV 484
                 59***************98766 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.14
   IstB_IS21  49 nivllGpsGvGKshlaialg 68 
                  i+++Gp G+GKs l   l 
  CCD25857.2 699 RIAVIGPNGAGKSTLINVLT 718
                 689**********9977665 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.1     0.047        16       2      17 ..     465     480 ..     464     486 .. 0.90
   2 ?    6.1   0.1     0.025       8.4       1      17 [.     702     718 ..     702     730 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.047
  ATP_bind_1   2 vGpaGsGKttfvgals 17 
                 +Gp G+GK+t+++a++
  CCD25857.2 465 CGPNGAGKSTLMRAMA 480
                 7************997 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.025
  ATP_bind_1   1 vvGpaGsGKttfvgals 17 
                 v+Gp G+GK+t+++ l+
  CCD25857.2 702 VIGPNGAGKSTLINVLT 718
                 89**********99875 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       5.5   1.8e+03     148     199 ..     113     159 ..     105     191 .. 0.69
   2 ?    1.6   0.0      0.47   1.6e+02      27      43 ..     464     480 ..     459     504 .. 0.91
   3 ?    7.6   0.0    0.0069       2.3      25      65 ..     700     741 ..     695     756 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 5.5
  Mg_chelatase 148 arfqlvaamNpcpcgklkdkekectcsekeierYlsklsgplldRidlqvev 199
                   a f +v a+Np  +  l  +  +c +s+   +++++k+  ++l+ i + v+v
    CCD25857.2 113 ALFAVVNAINPIATKALLPHLINCLSST---NKWQEKI--AILESIAILVDV 159
                   6688888888888877776666665444...3444444..344444444444 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.47
  Mg_chelatase  27 lvGppGsGKtmlakrlp 43 
                   l+Gp G+GK+ l ++++
    CCD25857.2 464 LCGPNGAGKSTLMRAMA 480
                   79**********99875 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0069
  Mg_chelatase  25 lllvGppGsGKtmlakrlps.llpplseeealevakiasvag 65 
                   + ++Gp G+GK+ l++ l++ llp   +  ++e  +ia +++
    CCD25857.2 700 IAVIGPNGAGKSTLINVLTGeLLPTTGDVYTHENCRIAYIKQ 741
                   6789*************9864899888888888888877766 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.034        11      28      55 ..     454     481 ..     449     498 .. 0.85
   2 ?    5.3   0.0     0.038        13      34      58 ..     698     722 ..     690     757 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.034
       AAA_7  28 lllknkkpvllvGptGtGKtviikdllk 55 
                 l lk+++   l+Gp G GK+++++ + +
  CCD25857.2 454 LRLKRGRRYGLCGPNGAGKSTLMRAMAN 481
                 5678888999*************98766 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.038
       AAA_7  34 kpvllvGptGtGKtviikdllkkld 58 
                   + ++Gp G GK+++i+ l+ +l 
  CCD25857.2 698 SRIAVIGPNGAGKSTLINVLTGELL 722
                 56789************99776654 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       8.5   2.8e+03      99     153 ..     172     221 ..     132     234 .. 0.51
   2 ?   -2.2   0.2       9.3   3.1e+03     100     130 ..     249     276 ..     180     287 .. 0.46
   3 ?    4.2   0.0      0.11        36      26      43 ..     465     482 ..     453     533 .. 0.88
   4 ?    5.7   0.0     0.036        12      24      82 ..     701     759 ..     694     797 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 8.5
    ATPase_2  99 sklvfkaielllekikkkgkkiiiiiDelqklidlglngaellvkeLlnlieslt 153
                 +  + +++ + ++++k++++k i  + e  + +       e ++ +L+n+i +++
  CCD25857.2 172 IPILSESMWDTKKEVKETATKTITKATETIENK-----DIEIFIPQLINCIANPS 221
                 344444444444444444444444444433333.....23344555555555555 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 9.3
    ATPase_2 100 klvfkaielllekikkkgkkiiiiiDelqkl 130
                  l+++ +++   +ik+k    ++iiD + kl
  CCD25857.2 249 PLLNRGLQERDTSIKRK---SAVIIDNMCKL 276
                 33333333333333333...56666666666 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.11
    ATPase_2  26 YGpegsGKtaLlkeiien 43 
                  Gp g GK++L++ +++ 
  CCD25857.2 465 CGPNGAGKSTLMRAMANG 482
                 6************99875 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.036
    ATPase_2  24 fiYGpegsGKtaLlkeiienledkdkyviyyialreesiskldefie.eeeekkklekal 82 
                  + Gp g GK++L++ +  +l+      +y  +  +++  k   f + e++ +k  ++++
  CCD25857.2 701 AVIGPNGAGKSTLINVLTGELLPTT-GDVYTHENCRIAYIKQHAFAHiENHLDKTPSEYI 759
                 577************9998886644.4555555444444444444334444444444444 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.029       9.6      32      80 ..     458     501 ..     453     510 .. 0.73
   2 ?    4.7   0.0     0.061        20      33      58 ..     697     722 ..     681     777 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.029
      AAA_25  32 agelallaGapgtGKttlaldlalavatGkpwlgpvapeqgkVlyvsaE 80 
                 +g    l+G+ g+GK+tl   +a   ++G p  +       k++yv  +
  CCD25857.2 458 RGRRYGLCGPNGAGKSTLMRAMANGQVEGFPTQD-----ECKTVYVEHD 501
                 6666679***********9988887777776655.....3466666555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.061
      AAA_25  33 gelallaGapgtGKttlaldlalava 58 
                  + ++++G+ g+GK+tl   l  +++
  CCD25857.2 697 SSRIAVIGPNGAGKSTLINVLTGELL 722
                 678999***********877766555 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.72   2.4e+02       1      16 [.     129     144 ..     129     159 .. 0.74
   2 ?    4.6   0.0      0.15        49       1      26 [.     171     196 ..     171     201 .. 0.91
   3 ?    0.5   0.0         3     1e+03       1      27 [.     290     317 ..     290     317 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.72
                 HHHHHHHHHT-SSHHH CS
        HEAT   1 llPlllkllsDpspeV 16 
                 llP+l+++ls+++  +
  CCD25857.2 129 LLPHLINCLSSTNKWQ 144
                 89********998665 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.15
                 HHHHHHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLga 26 
                 l+P+l + + D+  eV e+A k++++
  CCD25857.2 171 LIPILSESMWDTKKEVKETATKTITK 196
                 79********************9975 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 3
                 HHHHHHHHHT-.SSHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsD.pspeVReaAakaLgal 27 
                 llP l ++ s   +pe Re +++aL +l
  CCD25857.2 290 LLPGLKNNFSNiADPEAREVTLRALKTL 317
                 67888888777799**********9876 PP

>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.025       8.2       4      19 ..     465     480 ..     463     484 .. 0.90
   2 ?    4.0   0.0      0.14        45       3      42 ..     702     740 ..     700     765 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.025
                 E-STTSSHHHHHHHHH CS
      MutS_V   4 tGpnmaGkstylrqva 19 
                  Gpn aGkst++r +a
  CCD25857.2 465 CGPNGAGKSTLMRAMA 480
                 7************987 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.14
                 EE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--S CS
      MutS_V   3 itGpnmaGkstylrqvalivllaqiGsfvpaekaeisivd 42 
                 + Gpn aGkst++       ll  +G     e+++i+ ++
  CCD25857.2 702 VIGPNGAGKSTLINV-LTGELLPTTGDVYTHENCRIAYIK 740
                 78*********9964.445677777777777777776654 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       1.3   4.5e+02     135     150 ..     465     480 ..     454     519 .. 0.80
   2 ?    8.8   0.0    0.0023      0.76     112     179 ..     681     747 ..     654     761 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.3
       T2SSE 135 sGgTgsGKttllyall 150
                  G+ g GK+tl+ a+ 
  CCD25857.2 465 CGPNGAGKSTLMRAMA 480
                 79*********97654 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0023
       T2SSE 112 ealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvEDpvEiqleganqvql 179
                 ++ k+++++v  +  +    i v G+ g GK+tl+++l  e+  ++  + t E  +   +++    ++
  CCD25857.2 681 GTSKPQVSDVTFQC-SLSSRIAVIGPNGAGKSTLINVLTGELLPTTGDVYTHENCRIAYIKQHAFAHI 747
                 55555555555554.556678899****************9998889999988877666666655555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.16        53       3      21 ..     463     481 ..     461     494 .. 0.79
   2 ?    5.6   0.0     0.042        14       1      23 [.     699     721 ..     699     735 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.16
                 EEE--TTSSHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvle 21 
                  + Gp G GK+Tl++ +++
  CCD25857.2 463 GLCGPNGAGKSTLMRAMAN 481
                 689**********987664 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.042
                 EEEEE--TTSSHHHHHHHHHHHH CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlell 23 
                 ++++ Gp G GK+Tl++ ++ +l
  CCD25857.2 699 RIAVIGPNGAGKSTLINVLTGEL 721
                 58899***********9887776 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.32   1.1e+02      15      60 ..      78     123 ..      60     139 .. 0.79
   2 ?    7.0   0.0     0.026       8.6      25      89 ..     126     191 ..     116     197 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.32
  Vac14_Fab1_bd  15 ialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakg 60 
                     +l+ ++++++ + v+++ +   Dkds +   a  +l+ ++ +++ 
     CCD25857.2  78 TNLSPSVEPFIVSTVPSICAKAGDKDSSIQEIAKRALFAVVNAINP 123
                    45666699999999*************************9988764 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.026
  Vac14_Fab1_bd  25 leeivkpvlkcfsDkds.rvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksgae 89 
                    ++ +++ +++c+s +++ + +    Es+  ++ vak+++   + e+  +l++ + D++++vk++a 
     CCD25857.2 126 TKALLPHLINCLSSTNKwQEKIAILESIAILVDVAKEQIALRMPELIPILSESMWDTKKEVKETAT 191
                    46788888999988877244555679************************************9875 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.26        85       5      34 ..     466     497 ..     464     519 .. 0.69
   2 ?    6.1   0.0     0.027         9       1      22 [.     700     721 ..     700     788 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.26
                 ESTTSSHHHHHHHHHC.CST.CEEEE-HHHHC CS
         dNK   5 GnIgaGKstlvklLsk.klg.vkvfeEpvdkw 34 
                 G+ gaGKstl+  +++ +++ +++  E    +
  CCD25857.2 466 GPNGAGKSTLMRAMANgQVEgFPTQDECKTVY 497
                 778*********99872333477777766666 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.027
                 EEEEESTTSSHHHHHHHHHCCS CS
         dNK   1 ivveGnIgaGKstlvklLskkl 22 
                 i+v G+ gaGKstl+++L+ +l
  CCD25857.2 700 IAVIGPNGAGKSTLINVLTGEL 721
                 78899*************9876 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.024       8.1      19      42 ..     459     482 ..     441     493 .. 0.80
   2 ?    3.1   0.0      0.26        87      19      42 ..     697     720 ..     682     730 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.024
                 TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglaka 42 
                 g+   L G+ GaGK+tl+r++a++
  CCD25857.2 459 GRRYGLCGPNGAGKSTLMRAMANG 482
                 4457799**************987 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.26
                 TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglaka 42 
                 ++ i+  G+ GaGK+tl+  l  +
  CCD25857.2 697 SSRIAVIGPNGAGKSTLINVLTGE 720
                 5569999**********9987655 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1     0.044        15      31      47 ..     464     480 ..     461     485 .. 0.88
   2 ?    3.8   0.0      0.13        44      31      53 ..     702     724 ..     693     733 .. 0.86
   3 ?   -1.6   0.0       5.9     2e+03     160     198 ..     773     811 ..     765     819 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.044
                 HHS--SHHHHHHHHHHH CS
        MukB  31 lsGgnGaGksttmaafv 47 
                 l G nGaGkst m a+ 
  CCD25857.2 464 LCGPNGAGKSTLMRAMA 480
                 789**********9975 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.13
                 HHS--SHHHHHHHHHHHHHHS-- CS
        MukB  31 lsGgnGaGksttmaafvtaliPd 53 
                 + G nGaGkst +  +   l+P 
  CCD25857.2 702 VIGPNGAGKSTLINVLTGELLPT 724
                 6799********99999999996 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 5.9
                 TT-EEEE-S-HHHHHHHHHHTTSBSS---SHHHHHHHHH CS
        MukB 160 egvrlkkfnsvtdyhallfdlGvipkrlrssedrskfyr 198
                 + ++ ++ +s t+  + +f++  +p+r++  + r kf +
  CCD25857.2 773 DRANRQINESDTEMMNKIFKIEGTPRRVAGIHSRRKFKN 811
                 44555667788999999*****************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1049 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1222  (0.0681577); expected 358.6 (0.02)
Passed bias filter:                      772  (0.0430587); expected 358.6 (0.02)
Passed Vit filter:                       121  (0.00674884); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              54  [number of targets reported over threshold]
# CPU time: 1.11u 0.34s 00:00:01.45 Elapsed: 00:00:00.52
# Mc/sec: 6110.48
//
Query:       CCD25858.2  [L=679]
Description: hypothetical protein NDAI_0G00820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-83  278.5  10.5    1.1e-68  231.9   4.5    2.5  2  PLA2_B     Lysophospholipase catalytic domain
     0.0003   21.0   0.0    0.00081   19.6   0.0    1.8  2  Patatin    Patatin-like phospholipase
  ------ inclusion threshold ------
      0.044   13.9   0.4        4.2    7.5   0.0    2.5  2  TetR_C_17  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> PLA2_B  Lysophospholipase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.3     3e-17   1.8e-13       1      81 [.     116     181 ..     116     197 .. 0.85
   2 !  231.9   4.5   1.8e-72   1.1e-68      81     486 ..     278     678 ..     272     679 .] 0.79

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 3e-17
      PLA2_B   1 iaiavSGGGyramltgaGvlkAldsRtdnatglgGlLqsatYlaGlsGgsWlvgslavNnftsvqelskkkeddsvwelek 81 
                 +++a+SGGGyr+mltg+G+lk ld        +  l+++ +Y++GlsGgsW++  l++  f  +++l k       w+l++
  CCD25858.2 116 LGVAISGGGYRSMLTGSGFLKGLD--------EFKLIDCLSYISGLSGGSWILMDLIIHGFD-IDKLLK------NWDLKD 181
                 69**********************........666*********************999885.666666......355555 PP

  == domain 2  score: 231.9 bits;  conditional E-value: 1.8e-72
      PLA2_B  81 ksilnpeglelvknikrydeivdevekKkdagfnvsltDiwGralseklveaeegg..vnltls...slkdaekfqeaemplPiivadgrkpgetvinl 174
                 +s++ +   ++ + +++y+++  ev kKk  gf vs+tD+wG+al ++l +++++   +++t s    +++++kfq+ e p+Pi++a+ r+       l
  CCD25858.2 278 NSSVIYSFKKFRQVLDFYTDLHLEVRKKKIQGFYVSFTDYWGKALIKRLKHNDNNTsiIGTTNSltkLIQNNDKFQKFEAPIPIFIANCRNGH-----L 371
                 5555566677889999*********************************9955543113333332115899****************999753.....4 PP

      PLA2_B 175 NatvfEfsPyelgswdaklnsFvpveylGtklsnGtvvkkgkcvagfdnaGflmgtsstlFnevlle....insts..............mlesllkel 255
                   ++fEf+P+e+gswd  l+ Fv++ ylG+k+ +G++     c++ fd +Gf+++tss++Fn+v+l     i+++s                  + ++ 
  CCD25858.2 372 RNKIFEFTPFEFGSWDDMLRLFVKLPYLGSKIIKGVPE---ICYNDFDDIGFITATSSSIFNNVILYiwqlISESShevmkaietvmglfG---ISSKQ 464
                 5679********************************99...9*********************9987322223333455443332221111...11222 PP

      PLA2_B 256 lkkllk..dlsedsedisqyapnpfkdaeeenqnatqsivesktLdlvdggedgqniplvpllqkerevdvifaldnsadteeswpdgvslvatyeRvl 352
                 l++l +   + + + d ++y+ npf+++        ++++++++L+lvdggedg+nipl pll +er++dvif +d+s+d ++   +g+ l   ++   
  CCD25858.2 465 LEQLDEmnSMIQPETDYAVYHYNPFYQYP----GNDNDFTRDSHLYLVDGGEDGENIPLRPLLIPERDMDVIFVIDSSSDKNN-FANGTKLLYIFKELE 558
                 22222211233445577777777777777....66779******************************************999.99****998775443 PP

      PLA2_B 353 eskqvkgkkfpyvpdq.ntfvnlgLnkrptffGcDarnltdlsatvdestpPlvvylpnekysylsnlstfklsykdseregliengfeaatqdnetdd 450
                 +    +g +++ vp + + f   + +++p   Gc a+    +         P+++y pn++ys+ sn+stfk+ y+d+e +++++ng  + t dn   +
  CCD25858.2 559 K----QGIHYK-VPKElKKFG--KSQNHPLIIGCHAKSNNGV-------PLPIIIYYPNAEYSFPSNTSTFKVMYDDNETSSMLQNGKDIFTDDN---N 640
                 3....444443.665514444..35789*******9987776.......67*******************************************9...9 PP

      PLA2_B 451 defaacvacaiirRklerk..nltlpsecekcFedycw 486
                 + + +c++c i +R+++++  +++ ++ c+kcF++yc 
  CCD25858.2 641 PFYKNCLGCIISKRSIDKHgdGINYSKFCNKCFKKYCA 678
                 ****************9862368999***********5 PP

>> Patatin  Patatin-like phospholipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.4e-07   0.00081       2     103 ..     119     293 ..     118     359 .. 0.72
   2 ?   -3.2   0.1       1.4   8.1e+03     180     202 ..     497     521 ..     488     523 .. 0.63

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1.4e-07
     Patatin   2 vlsGGGsr.gafslgalkaL.kkelgerfdiisGtSaGAiia......................................................... 41 
                 ++sGGG r ++   g+lk L + +l + + +isG S+G++i                                                          
  CCD25858.2 119 AISGGGYRsMLTGSGFLKGLdEFKLIDCLSYISGLSGGSWILmdliihgfdidkllknwdlkdgllegipefdisqkdivsgmgknralmekrlekrmy 217
                 79*****************99999******************777777777777777777777777777777777777777777777777777777777 PP

     Patatin  42 ...lllalgrdpaalvddlrnlllnkifdrdl...........lirelaanlaarlsgllgkgglfdaealrellr 103
                     l + g+ +++++d+++n++  +++                 +e+++ l + +s   + + +++ + +r+ l+
  CCD25858.2 218 hfkNLETNGKQFDEFYDFFENIWTPLDEEGSKifngtlvkrgdHPLERLKLLIFGNSTSQNSSVIYSFKKFRQVLD 293
                 7666666667777777777777777766666666776666666666666666666666666666666666666665 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.4
     Patatin 180 ppvsldge.lyvDGG.ilsNvPila 202
                 + +++d+  ++vDGG   +N+P+++
  CCD25858.2 497 NDFTRDSHlYLVDGGeDGENIPLRP 521
                 44556666677***95457777765 PP

>> TetR_C_17  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0007       4.2      24      69 ..      58     105 ..      40     111 .. 0.83
   2 ?    3.7   0.1     0.011        63      36      66 ..     203     233 ..     178     235 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0007
                 HHHHHHGGGG-H...HHHHHHHHHHHHHHHHHHHHHHHHHHTTS---SS CS
   TetR_C_17  24 kyEyfltsyree...errayleeRyerlvealkellqeGvergEfkPql 69 
                 +  yf+ts ++e   e++ yl++R   l +++ + l  G +r  f P++
  CCD25858.2  58 THKYFMTSLKNElcpEEELYLKNRKRLLQNNIRQYL-TGLDRINFTPEM 105
                 567*****99874436788***************99.6*********87 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTS-- CS
   TetR_C_17  36 errayleeRyerlvealkellqeGvergEfk 66 
                 ++ra++e+R e+ + ++k+l  +G +  Ef+
  CCD25858.2 203 KNRALMEKRLEKRMYHFKNLETNGKQFDEFY 233
                 7899*********************999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      627  (0.0349713); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.28s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 4830.44
//
Query:       CCD25859.2  [L=465]
Description: hypothetical protein NDAI_0G00830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-64  217.0   0.2    4.5e-64  216.5   0.2    1.2  1  UPF0052   Uncharacterised protein family UPF0052


Domain annotation for each model (and alignments):
>> UPF0052  Uncharacterised protein family UPF0052
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.5   0.2   2.5e-68   4.5e-64       1     256 [.       3     421 ..       3     444 .. 0.88

  Alignments for each domain:
  == domain 1  score: 216.5 bits;  conditional E-value: 2.5e-68
                 EEEEE-CHHHHHHHHHHCCSS....CEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-CHHHHHCH-B-SSSSSST.............. CS
     UPF0052   1 vvvlgGGtGlskllrglkevt....aeltavvtvaDdggssGelrrelgllaigDirnvlvalidderlleeLfqyRfkgdgdla.............. 81 
                 +vvl+GGt++++l+ +++e++     +lt++++++D+ggs++e++r +g++aigDir+++v++++d++ l +L+ yR+++d+  a              
  CCD25859.2   3 IVVLSGGTATNSLTPCFSEISvskgFDLTYILPISDNGGSTSEILRIVGGPAIGDIRSRIVRIMNDPQ-LVKLLGYRLSEDEITAkkdwnnivegthii 100
                 8********************999999*****************************************.899*******96555566777888888888 PP

                 ....................................T-BHHHHHHHHHHHHH.S-HHHHHHHHHHHTT-..SSEEEES..-SS--EEEEEETTS-EEES CS
     UPF0052  82 ....................................ghslgnllLaalaelt.gsleeaiealskilkv..rgrvlPa..tddpvelsaeledGeeitg 139
                                                     ++slgn++L++ a+l+ gsl++aie++++i ++  +++v+P+  t++++++sa+l++G++itg
  CCD25859.2 101 wsnvptevkemcraffihiqsellkknrssnnfqfaKASLGNMFLTG-ARLFlGSLDAAIELMMRIGRCseKVHVIPCinTNHTHHISAVLKNGTIITG 198
                 888888888888888888888888888888888898***********.999989***************8556************************** PP

                 TTTGG.................................................................................GG-S....-EEE. CS
     UPF0052 140 eskis.................................................................................eark.lkapikr. 155
                 +s+is                                                                                 + ++ l+apik+ 
  CCD25859.2 199 QSQIShpskivpkkpilkttkdqfihlleldddlmnssmassnesrneqgkkqinqeiveeeeaeyanpiyilpelkhsqlhydkvDDNEmLPAPIKKi 297
                 ****9999***************************************************************************98866778******** PP

                 EEEESTT--....--HHHHHHHHH-SEEEE-SS-IIIIIHHHHTSCCHHHHH.HH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-SS....S.. CS
     UPF0052 156 vflepegae....aapevleaikeAdlivlgpGslytSiiPiLlvpgiaeal.reskakkvlvsnimtqkGetdgfsvsdhvkaieravgkgvakay.. 247
                 ++++p+g+e     +++++++ik+A++iv+++Gsl+tS++Pi+++ ++ae + ++++++kvl++n+     et g++  ++vk++ +++ ++v++    
  CCD25859.2 298 LYINPYGEEikpkGNSRAISKIKNANMIVYSIGSLMTSLLPIIILGNLAEVIlEAKQTRKVLLINNKY-DRETFGLDGTHYVKMVVKSLLEAVSSYRqs 395
                 ********655559999***********************************9**************6.889999999999999999988443333244 PP

                 ................-SEEE.EE-S CS
     UPF0052 248 ................vdavl.vnts 256
                                 +++++ +++s
  CCD25859.2 396 kdlpieslknitwshfITDIVyLKQS 421
                 44476666666655554444434443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       638  (0.0355848); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3504.14
//
Query:       CCD25860.2  [L=248]
Description: hypothetical protein NDAI_0G00840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.8e-24   84.9   0.0    1.1e-23   84.6   0.0    1.1  1  HAD              haloacid dehalogenase-like hydrolase
    1.1e-06   28.3   0.1    1.8e-06   27.5   0.1    1.3  1  Put_Phosphatase  Putative Phosphatase
    0.00012   21.7   0.0     0.0007   19.2   0.0    2.1  3  UMPH-1           Pyrimidine 5'-nucleotidase (UMPH-1)
    0.00014   22.0   0.1     0.0084   16.2   0.1    2.4  2  HAD_2            Haloacid dehalogenase-like hydrolase
    0.00035   20.9   0.3      0.033   14.5   0.0    2.7  2  Hydrolase        haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.053   13.8   0.6       0.13   12.5   0.5    1.8  2  DUF1947          Domain of unknown function (DUF1947)


Domain annotation for each model (and alignments):
>> HAD  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   3.7e-27   1.1e-23       1     188 []      13     195 ..      13     195 .. 0.84

  Alignments for each domain:
  == domain 1  score: 84.6 bits;  conditional E-value: 3.7e-27
         HAD   1 alfDfDgTLldgdslelllrfllrrgaprlwralreklllalfrellrldraglaelleallaglseelaaelerfvaevirpklldpgalellaahra 99 
                 ++ DfDgT + +ds+++l++ +++      ++++r+k+++ +  ++++++r+g+ ++++++  +l+e +++ le  +        ldpg+++ ++++++
  CCD25860.2  13 IFTDFDGTVTWQDSNDYLTD-HYGF-----GKEARAKIFEGV-LDGSKSFRDGFTAMIDSIQTPLEE-CKKILETKI-------QLDPGFKDTFEWAQQ 96 
                 799*****************.7766.....99**********.99********************86.555555555.......288************ PP

         HAD 100 aGdrvvvvSgglrplvepll.aelgadev....lat.elevdd..rltgelglegkpvrgegkvaalrewlaaegegidlee...vvay.GDspsDlpl 186
                 +++++vvvS+g+rp+++ ll ++lgad +    + + e+evd+     +++ + +   +g++k   ++++ ++ + g++  e   +++y GD++sDl +
  CCD25860.2  97 NNVPIVVVSSGMRPIIKDLLsRLLGADSIdkidIESnEVEVDEqnQ--WKVIYKDETPFGHDKSITIDDYKKKFESGLKQGEtrpTYFYcGDGISDLSA 193
                 ********************99***555544454444888888544..444488888888899999999777777777777778999999********9 PP

         HAD 187 lr 188
                 ++
  CCD25860.2 194 AK 195
                 96 PP

>> Put_Phosphatase  Putative Phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.1   6.1e-10   1.8e-06       2     210 ..      12     216 ..      11     227 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 6.1e-10
  Put_Phosphatase   2 lvvfDFDktiidedsdnwvvdelpate.lfeelretlrkglwnelmdrvlkelheqgvseadikkvlr.siplspglvelikslakkkleldli 93 
                      ++  DFD t+  +ds++ ++d  ++ +   +++ e +  +  +++ d   + +++ +   ++ kk+l+ +i l+pg+ + ++ +  +++++ ++
       CCD25860.2  12 VIFTDFDGTVTWQDSNDYLTDHYGFGKeARAKIFEGVL-DGSKSFRDGFTAMIDSIQTPLEECKKILEtKIQLDPGFKDTFEWA--QQNNVPIV 102
                      6778******************9975514567777777.6778999999999999999999999999737**************..6788**** PP

  Put_Phosphatase  94 iiSDaNsffieeileaagledlFse..iftNPaavdasGeltvlpyhehsCklcpsNlCKgkvleelvaeq...aregveyerliYvGDganDl 182
                      ++S   +  i  +l+ +  +d  ++  i +N  +vd++ + +v  y++++    p    K   +++++++    +++g +    +Y GDg+ Dl
       CCD25860.2 103 VVSSGMRPIIKDLLSRLLGADSIDKidIESNEVEVDEQNQWKVI-YKDET----PFGHDKSITIDDYKKKFesgLKQGETRPTYFYCGDGISDL 191
                      **************999888888876689*************96.88754....66666777777776543234899999999**********9 PP

  Put_Phosphatase 183 CpvlklrekDvampRkgfpleklisenk 210
                       +    +e+D+ ++++g +l +  ++++
       CCD25860.2 192 SAA---KECDLLFAKRGKDLVTFCKRQN 216
                      875...6899999999987776666655 PP

>> UMPH-1  Pyrimidine 5'-nucleotidase (UMPH-1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.22   6.5e+02      69     103 ..      30      67 ..      20      71 .. 0.64
   2 !   19.2   0.0   2.4e-07    0.0007      84     192 ..      76     191 ..      64     198 .. 0.74
   3 ?   -1.4   0.0      0.45   1.3e+03      84     112 ..     194     222 ..     146     241 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.22
      UMPH-1  69 Llieqklkke...eiaevvkeskialrdgveelfekle 103
                 L  + ++ ke   +i e v + ++ +rdg++ ++++++
  CCD25860.2  30 LTDHYGFGKEaraKIFEGVLDGSKSFRDGFTAMIDSIQ 67 
                 4444556555111566667788999********99886 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 2.4e-07
      UMPH-1  84 vkeskialrdgveelfekleklnvPvlifsaGlgdvleevlrqa..nvvysnvkvvsnfldfdedGvlkg.fkdklihvfnknesvld.gteyfdql.. 176
                 + e+ki+l  g+++ fe  +++nvP+++ s+G+  +++++l +     +   + + sn ++ de+   k  +kd++   + k  ++ d ++++   l  
  CCD25860.2  76 ILETKIQLDPGFKDTFEWAQQNNVPIVVVSSGMRPIIKDLLSRLlgADSIDKIDIESNEVEVDEQNQWKViYKDETPFGHDKSITIDDyKKKFESGLkq 174
                 567899***********************************99876778899**********9987665425677666666665555544444444433 PP

      UMPH-1 177 .kkrtnvillGDslGDl 192
                  ++r      GD + Dl
  CCD25860.2 175 gETRPTYFYCGDGISDL 191
                 34455555666666665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.45
      UMPH-1  84 vkeskialrdgveelfekleklnvPvlif 112
                 +ke++  +  + ++l++  +++nvP+  f
  CCD25860.2 194 AKECDLLFAKRGKDLVTFCKRQNVPFHEF 222
                 45666666666666777777777776555 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.8e-06    0.0084       4     127 ..      16     130 ..      12     175 .. 0.78
   2 ?    3.8   0.0     0.018        53     154     172 ..     180     198 ..     156     202 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 2.8e-06
       HAD_2   4 DlDgTlldteeliiqafnelleeyglselseeelrkliglslrellrklgeseeeeekieellrkyneekkkkevkpydgvkelLeeLkeagyklgivT 102
                 D+DgT      ++ ++  +l ++yg+++  + ++ + +  +  +++r  +    + ++i++ l++ ++ +++ ++++ +g k++ e+ +++++ + +v+
  CCD25860.2  16 DFDGTV-----TWQDSNDYLTDHYGFGKEARAKIFEGVL-DGSKSFRDGFTA--MIDSIQTPLEECKKILET-KIQLDPGFKDTFEWAQQNNVPIVVVS 105
                 666664.....4666777777778776333333333332.222355554443..4459999999***99999.************************** PP

       HAD_2 103 sksreaveekleqlgiesyFdvivt 127
                 s++r  +++ l++l   + +d+i +
  CCD25860.2 106 SGMRPIIKDLLSRLLGADSIDKIDI 130
                 ************9999999999855 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.018
       HAD_2 154 eviyvGDsptDieaakkag 172
                   +y+GD ++D+ aak+  
  CCD25860.2 180 TYFYCGDGISDLSAAKECD 198
                 568*************875 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.2      0.03        90       3      31 ..      12      42 ..       9      63 .. 0.70
   2 !   14.5   0.0   1.1e-05     0.033     115     210 .]      79     198 ..      58     198 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.03
                EEEEESBTTTB..CHHHHHHHHHHHHCHHHH CS
                xxxxxxxxxxx..xxxxxxxxxxxxxxxxxx RF
   Hydrolase  3 tvvfDkdGTLt..tgepsvedvivsaalala 31
                +++ D+dGT+t  +++  ++d +   + a+a
  CCD25860.2 12 VIFTDFDGTVTwqDSNDYLTDHYGFGKEARA 42
                5777*******65555666666555544454 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.1e-05
                 HTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHH.TT.....GGGESEEEEHHCES.............STTTSHHHHHHHHHHHT....... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.....xxxxxxxxxxxxxx.............xxxxxxxxxxxxxxxxx....... RF
   Hydrolase 115 dplkvkpeaaeavasLkaagievvlltgdnpetaeraanq.lG.....ddyfdaviasdiet.............vakpspegkvaaireLq....... 187
                  ++++ p+ ++++++ +++++++v+++++ +   + ++++ lG     +     ++  ++e+                p   +k  +i+ ++       
  CCD25860.2  79 TKIQLDPGFKDTFEWAQQNNVPIVVVSSGMRPIIKDLLSRlLGadsidK-----IDIESNEVevdeqnqwkviykDETPFGHDKSITIDDYKkkfesgl 172
                 456799*****************************99999899544331.....333333223333444555444444466667777777755555655 PP

                 ..ST.GGGEEEEESSHHHHHHHHHTT CS
                 ..xx.xxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 188 ..gk.peevamVGDgvnDaaalaaAg 210
                   g+        GDg+ D++a+++ +
  CCD25860.2 173 kqGEtRPTYFYCGDGISDLSAAKECD 198
                 55332345777788888888888765 PP

>> DUF1947  Domain of unknown function (DUF1947)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.4   7.2e+03      45      59 ..      97     111 ..      88     118 .. 0.69
   2 ?   12.5   0.5   4.4e-05      0.13      23      49 ..     127     153 ..     111     160 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.4
                 TTEEEEEESSSEEE- CS
     DUF1947  45 ngvpilfeeekliPt 59 
                 n+vpi++ +  + P 
  CCD25860.2  97 NNVPIVVVSSGMRPI 111
                 889998876555555 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 4.4e-05
                 --TT--..-EEEE-SS-EEEEETTEEE CS
     DUF1947  23 sislesdkiEieeekkeklYlingvpi 49 
                 +i++es+++E++e+ + k+++ ++ p+
  CCD25860.2 127 KIDIESNEVEVDEQNQWKVIYKDETPF 153
                 89*******************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1827.62
//
Query:       CCD25861.2  [L=419]
Description: hypothetical protein NDAI_0G00850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.8e-65  220.0   0.1    5.6e-65  219.8   0.1    1.0  1  Iso_dh    Isocitrate/isopropylmalate dehydrogenase


Domain annotation for each model (and alignments):
>> Iso_dh  Isocitrate/isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.8   0.1   3.1e-69   5.6e-65       2     348 .]       6     399 ..       5     399 .. 0.93

  Alignments for each domain:
  == domain 1  score: 219.8 bits;  conditional E-value: 3.1e-69
                 EEEEEESTTHHHHHHHHHHHHHHHHHHHT-EEEEEE---THHHHHHHSSSS-HHHHHHHHHSSEEEEEE---CSSSSSSHHH.HHHHHHHHTT.EEEEE CS
      Iso_dh   2 iallegdgiGpevveaalkvlkaakekaglelefeevdvGgaaidetgeplpeetleaikeadvvllgavgtpkekevrpen.gLlaLrkeld.lfanl 98 
                 + +++++++G+e+++ +++++k++   ++l+++++++d++ + +d+t+++++ ++++a+ +  v +++a++tp+  e+r+++  L++++k+++ +++n+
  CCD25861.2   6 VKTPIVEMDGDEMTRIIWHLIKEKLILPYLQIDIKYFDLSIQNRDATNDQVTIDAANATLKHGVGVKCATITPD--EARVKEfNLKKMWKSPNgTIRNI 102
                 678899********************************************************************..55555556********99***** PP

                 EEEE-B.CCTTCCSSBTHHHHCT.-EEEEEEE-SSCGGCSSEEEEET.......................TG..GGGEEEEEEEEEHHH.HHHHHHHHH CS
      Iso_dh  99 rpvkvf.eklkvksplkrevvee.vdlvivReltggiYfgeekekkg.......................si.fteevavdtklyseee.ieriaraaf 170
                 + ++vf e++  +++++  v ++ + ++i R++ g++Y +++ e+                         s+ ++++ ++ + +y++ + i+ +a+a+f
  CCD25861.2 103 LGGTVFrEPIIIPKIPR-LVSNWeKPIIIGRHAYGDQYKATDLEIPPnkdiklliqdkadkedskiinvfSFpNDGTGGIAMVMYNTVDsIKGFAKASF 200
                 ******99999999999.5888889******************9999999******************997778999********99777********* PP

                 HHHHHTTTSEEEEEESTTTTHHHH.HHHHHHHHHHCC......TTTTSEEEEEEHHHHHHHHHHSGGGGS.EEEE-HHHHHHHHHHHHHHTTSGCC-EE CS
      Iso_dh 171 elAlkrgkkkvtlvdKanvlksse.lwrkiveevaee......eypdielehqlvDsaamqlvkspkqfd.VivtkNlfGDilSDeaaalvGslGllpS 261
                  +Alkr k ++ l +K+++lk+++ +++ i+++++++      e  ++++eh+l+D++++q++ks    + +i++kN++GD++SD +a+ +GslGl++S
  CCD25861.2 201 IMALKR-KLPLFLATKNTILKKYDgRFKSIFDDMYQNefkekfEKLGLTYEHRLIDDMVAQMLKSK--GGfIIAMKNYDGDVQSDIVAQGFGSLGLMTS 296
                 ******.*****************************978887777789****************99..4449*************************** PP

                 EEEET.SS-EEEEESS---CCCTTSS-......S-THHHHHHHHHHHHHTTT-HHHH......HHHHHHHHHHHHH.TSCCHHHCTTS..TCCCHHHHH CS
      Iso_dh 262 aslge.kkvaifEavHGsapdiagkdk......aNpiavilSaalmLryslgleeaA......dkiekAvekvlea.givTkDlagea..akevstsef 344
                   + + +k+   Ea+HG+++++ ++ +      +N+ia+i++++  +  + +++ +       + ++kA  ++++  +++TkDla+     ++v+t+ef
  CCD25861.2 297 QLITPdGKTFQSEAAHGTVTRHYRQYQqgkptsTNSIASIFAWTSGIIQKGEMDGTPdvvkfgELLQKATIDTVQIdNKMTKDLASLLgqPNYVTTEEF 395
                 *****889999*************999999***************9998666655557788889**********9779********998889******* PP

                 HHHH CS
      Iso_dh 345 gdav 348
                 + av
  CCD25861.2 396 IYAV 399
                 9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       746  (0.0416086); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3164.55
//
Query:       CCD25862.2  [L=523]
Description: hypothetical protein NDAI_0G00860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3777.71
//
Query:       CCD25863.2  [L=319]
Description: hypothetical protein NDAI_0G00870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-58  195.7   0.0    5.7e-58  195.4   0.0    1.1  1  QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal
    2.1e-17   63.0   0.0    1.6e-16   60.2   0.0    2.4  2  QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal


Domain annotation for each model (and alignments):
>> QRPTase_C  Quinolinate phosphoribosyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.4   0.0   6.4e-62   5.7e-58       1     169 []     142     315 ..     142     315 .. 0.97

  Alignments for each domain:
  == domain 1  score: 195.4 bits;  conditional E-value: 6.4e-62
                 HHHHHHHHHHHHHCT..SSEEEE-S---TTTHHHHHHHHHHTTSB--TSSTTTSEEE-HHHHHHHSSHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHH CS
   QRPTase_C   1 iAtltarmveaaksa..kvrildTRkttPglrllekyAvliGGgdnhrlgLsdmvlikdnhiaaagsiveavksvreavdkevkievevesleeleevl 97 
                 +At++ ++v+aa+++  k  i++TRkttPglr leky +l+GG+d+hr++Ls+mv++kdnhi+  gsi+ea+k +r+++++++kieve++s+ e++e++
  CCD25863.2 142 VATMSWNFVSAARKVgyKGIIAGTRKTTPGLRRLEKYCMLVGGCDTHRYDLSSMVMLKDNHIWSRGSITEAIKDARNVCGFALKIEVECRSEIEANEAI 240
                 8**************99********************************************************************************** PP

                 HHT-SEEEEES--HHHHHHHHHHHHHHSTT...SEEEEESS--TTTHHHHHCTT-SEEEECHHCHTB----EEEE CS
   QRPTase_C  98 eaeadiimLDnfsveelkkaveelkeknkr...vlievSGgvtlenveeyaksgvdvisvgalthsvkalDislk 169
                 ea+adiimLDnfs+eelk ++  lkek+ +   v +e+SG ++l+++eey + ++d++s++++++++ka+D+slk
  CCD25863.2 241 EAGADIIMLDNFSSEELKICARHLKEKWSQkgkVFLECSGDLKLNTIEEYFCNDIDIYSTSSIHKGTKAIDFSLK 315
                 ******************999998777666666****************************************97 PP

>> QRPTase_N  Quinolinate phosphoribosyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   1.7e-20   1.6e-16      12      89 .]      57     140 ..      48     140 .. 0.85
   2 ?   -1.1   0.0      0.23   2.1e+03      58      72 ..     269     283 ..     257     299 .. 0.83

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 1.7e-20
                 GCTTSEEEEEEEESSSEEE-SHHHHHHHHHHHTTTEEEESS-TT-EEET.......TEEEEEEEEEHHHHHHHHHHHHHHHHHHH CS
   QRPTase_N  12 ipeekkakaeiiakeegvvaGlevaeevfellpglevellvkDGervek.......gdvlleieGnarallsaERvaLnllqrlS 89 
                 + +++  +a++  ke+g +aG+++++e+f+++ ++++++l+++G+ +++       +  ++ ++Gnar++l aER+aLn+l+r+S
  CCD25863.2  57 VVGDHSKTATLYMKEDGLIAGIPFVNEIFKHC-EVQFKWLYEEGSFLTPsvqstegKLPVAFVKGNARNILLAERTALNVLSRAS 140
                 6789999*************************.***********865541111111568************************98 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.23
                 EETTEEEEEEEEEHH CS
   QRPTase_N  58 vekgdvlleieGnar 72 
                  +kg+v+le++G+++
  CCD25863.2 269 SQKGKVFLECSGDLK 283
                 58999******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2307.12
//
Query:       CCD25864.2  [L=68]
Description: hypothetical protein NDAI_0G00880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      173  (0.00964917); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 528.08
//
Query:       CCD25865.2  [L=254]
Description: hypothetical protein NDAI_0G00890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-58  195.7   0.2    6.5e-58  195.4   0.2    1.1  1  Proteasome      Proteasome subunit
    4.3e-12   45.5   1.2    8.2e-12   44.6   0.2    2.1  3  Proteasome_A_N  Proteasome subunit A N-terminal signature
  ------ inclusion threshold ------
      0.068   13.0   0.1       0.13   12.2   0.1    1.4  1  DUF4823         Domain of unknown function (DUF4823)


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.4   0.2   1.1e-61   6.5e-58       2     190 .]      30     216 ..      29     216 .. 0.98

  Alignments for each domain:
  == domain 1  score: 195.4 bits;  conditional E-value: 1.1e-61
                 HHS-EEEEEEETTEEEEEEEEEEEETTEEEESSS.STSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHHC CS
  Proteasome   2 kkGttvvGikgkdgvvlaadkratagskllskst.veKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqrs 99 
                 ++++t +Gi   dg+vlaa++++t  s+ll+++t +eK++k++d+i va+aGl+aDa++l++ ar +aq+y  +y+++ipve+lv+r+++ +q+ytq++
  CCD25865.2  30 SHAGTGIGIMVPDGIVLAAERKVT--STLLEQDTsIEKLYKLNDKITVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHG 126
                 7999********************..999999998**************************************************************** PP

                 TTTTTSEEEEEEEEETTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHHSTTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome 100 grrpfgvslliagvdeeggpeLyqidpsGsyieekdavaiGsgseaaktalekeykedltleeavelavkalkealerdklsgknievavi 190
                 g rpfgvs+++ag+d++ g++Ly+ +psG+y+++k a+++G ++ aa+t+l+  yk+d+ l+ea+ela+k+l+++++  +l+ +++e+a+i
  CCD25865.2 127 GLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWK-AISVGANTSAAQTLLQMDYKDDMRLDEAIELALKTLSKTTDSSSLTYDKLEFATI 216
                 **********************************8.***************************************************9987 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.2   1.4e-15   8.2e-12       1      22 [.       6      27 ..       6      27 .. 0.97
   2 ?   -2.8   0.0      0.93   5.6e+03      14      19 ..     175     180 ..     175     180 .. 0.92
   3 ?   -2.6   0.0      0.76   4.5e+03      11      16 ..     222     227 ..     221     227 .. 0.91

  Alignments for each domain:
  == domain 1  score: 44.6 bits;  conditional E-value: 1.4e-15
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmk 22
                    YD+ +t+FSP+GRL+QVEYA++
      CCD25865.2  6 YDSRTTIFSPEGRLYQVEYALE 27
                    9*******************87 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.93
  Proteasome_A_N  14 LfQVEY 19 
                     L+Q +Y
      CCD25865.2 175 LLQMDY 180
                     89***9 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.76
  Proteasome_A_N  11 dGRLfQ 16 
                     dG ++Q
      CCD25865.2 222 DGEVYQ 227
                     9****9 PP

>> DUF4823  Domain of unknown function (DUF4823)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   2.1e-05      0.13      73     135 ..      54     116 ..      45     120 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.1e-05
     DUF4823  73 prilswedratewsdkedraevqlmlietetknlvdsarirgksglltfgddkPqdllaePls 135
                  ++l+ +  ++++++ +d+++v +  + ++++ l+++ari+++  l t ++d P + l   ls
  CCD25865.2  54 STLLEQDTSIEKLYKLNDKITVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLS 116
                 56677777789999999*************************************999876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1866.16
//
Query:       CCD25866.2  [L=1279]
Description: hypothetical protein NDAI_0G00900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.036   14.2   0.1       0.15   12.2   0.1    2.2  1  CNOT11    CCR4-NOT transcription complex subunit 11


Domain annotation for each model (and alignments):
>> CNOT11  CCR4-NOT transcription complex subunit 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   8.5e-06      0.15      76     122 ..    1106    1155 ..    1083    1158 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.5e-06
      CNOT11   76 erlvrlvcvflqsLirnkivdv..kdllvevqaFClefsr.ikEaaaLyr 122 
                    l++l+c++++sLi+nk +d   +d   e+q++ +++   +kEa++L+ 
  CCD25866.2 1106 MGLMKLICIMVSSLIENKKFDFtkSDCNFELQTLLMNWIGiLKEAKELFF 1155
                  45789***************9988999***********9967******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1238  (0.0690501); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.30s 00:00:01.14 Elapsed: 00:00:00.45
# Mc/sec: 8462.08
//
Query:       CCD25867.2  [L=163]
Description: hypothetical protein NDAI_0G00910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-35  122.1   0.4    1.5e-35  121.9   0.4    1.1  1  UQ_con     Ubiquitin-conjugating enzyme
    7.9e-06   25.6   0.2    1.1e-05   25.1   0.2    1.2  1  UFC1       Ubiquitin-fold modifier-conjugating enzyme 1
     0.0038   17.5   0.1      0.005   17.1   0.1    1.3  1  RWD        RWD domain
  ------ inclusion threshold ------
      0.013   15.2   0.0      0.015   15.0   0.0    1.3  1  Prok-E2_B  Prokaryotic E2 family B
       0.07   13.0   0.4       0.11   12.4   0.4    1.3  1  UEV        UEV domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.4   4.2e-39   1.5e-35       2     136 ..      11     154 ..       3     158 .. 0.86

  Alignments for each domain:
  == domain 1  score: 121.9 bits;  conditional E-value: 4.2e-39
                 HHHHHHHHHHSTTTTEEEEEEE......TTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESS.T-SCTTBE.TTSBB-CGGGSTTT-- CS
      UQ_con   2 lqkelkelakkkpsgisaklvd......denlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvt.kifHPnvd.ksGevcldiLkeekWs 92 
                 +qk+l++ ++++ + +++ +v+      d++l++w+++ikgp++tpY g  F l +++p++YP  pP ++f+  ++ H+nv+ ++Ge+cldiLk+++W+
  CCD25867.2  11 IQKQLNNNRNNQDDEFNNIIVSlapidpDQDLTKWEAVIKGPQGTPYYGFNFILYITIPQEYPTVPPFFEFQPrSMPHCNVNyNTGEICLDILKQDHWT 109
                 566666666666666766666655443449******************************************549************************ PP

                 TTSHHHHHHHHHHHHHHS--TTS-SSHHHHHHHHHT.HHHHHHHH CS
      UQ_con  93 paltlesvllsiqsLlaepnpesplnkeaakllkkd.reeykkkv 136
                 p+++l s l +i+ Ll++p pespln++ a+ll+    ++y+  +
  CCD25867.2 110 PVWNLMSTLKAIWLLLKDPVPESPLNVDLANLLRFGdLSAYNGLI 154
                 *******************************99866566776665 PP

>> UFC1  Ubiquitin-fold modifier-conjugating enzyme 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   3.1e-09   1.1e-05      25     121 ..       2     113 ..       1     122 [. 0.80

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 3.1e-09
        UFC1  25 erlkeeykalikyveenkesdndwfk........lesnkegtkwkGkcwyvhelkkyefd..lefdipvtypataleial.peldgktakmyrgGkicl 112
                 +r+ +eyk++ k +++n+++++d f+        ++++++ tkw+      + +  y f+  l + ip+ yp+ ++ +++ p    + +  y  G+icl
  CCD25867.2   2 SRIIKEYKTIQKQLNNNRNNQDDEFNniivslapIDPDQDLTKWEAVIKGPQGTPYYGFNfiLYITIPQEYPTVPPFFEFqPRSMPHCNVNYNTGEICL 100
                 58899************99988877555555555789********9998888877776651167899********9888736667789999*******9 PP

        UFC1 113 ti....hfkplwa 121
                 +i    h++p+w+
  CCD25867.2 101 DIlkqdHWTPVWN 113
                 8444449999996 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.4e-06     0.005      46      86 ..      25      92 ..       2     121 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.4e-06
                ...............................TT-CEEEEEEEEE-SSTTSS--EEEEEECCSS-HHHHH CS
                x............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD 46 e............................feekkkpslkleiklpeeYPeeaPiislsstenlpkeqvk 86
                e                             +  +  ++ l i+ p+eYP+++P ++++    +p+  v+
  CCD25867.2 25 EfnniivslapidpdqdltkweavikgpqGTPYYGFNFILYITIPQEYPTVPPFFEFQPRS-MPHCNVN 92
                2334455555555555555666666666666778999********************9998.7765554 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   4.3e-06     0.015      37     106 ..      61     126 ..       9     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.3e-06
   Prok-E2_B  37 tvdlrlvypdsfpllppavflqdpeqlkllpHintfg..gaLClleeeldldewdpngsvadvleqlqqvLn 106
                  + l++ +p ++p++pp  + q ++    +pH+n +   g++Cl    l+ d w+p  ++   l+ +  +L+
  CCD25867.2  61 NFILYITIPQEYPTVPPFFEFQPRS----MPHCNVNYntGEICLD--ILKQDHWTPVWNLMSTLKAIWLLLK 126
                 56689999********999888777....79*9874244*****6..8999999998888888877777776 PP

>> UEV  UEV domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4     3e-05      0.11      50     110 ..      62     120 ..      48     132 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3e-05
                 EEEEEE--TTTTTS--EEEE-GCC--TSGGGGGB-.TTSBB--HHHHS..--TTT--HHHHHHH CS
         UEV  50 iPiliwvlesyPveaPivyvkptksmvikknenvd.aqGlvylpyLee..Wkreksnlvslvqe 110
                 + + i ++++yP+ +P++  +p++     +++nv+ + G + l++L++  W++   nl+s ++ 
  CCD25867.2  62 FILYITIPQEYPTVPPFFEFQPRSM----PHCNVNyNTGEICLDILKQdhWTP-VWNLMSTLKA 120
                 5567889***************998....666776246********7532776.7777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      635  (0.0354175); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1183.33
//
Query:       CCD25868.2  [L=296]
Description: hypothetical protein NDAI_0G00920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.2e-25   88.5   2.2    9.9e-25   87.6   2.2    1.5  1  Band_7         SPFH domain / Band 7 family
  ------ inclusion threshold ------
      0.038   13.1   1.2      0.052   12.6   1.2    1.2  1  YdfA_immunity  SigmaW regulon antibacterial
       0.08   12.6   0.1       0.13   12.0   0.1    1.3  1  Band_7_1       SPFH domain-Band 7 family


Domain annotation for each model (and alignments):
>> Band_7  SPFH domain / Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   2.2   1.7e-28   9.9e-25       3     168 ..      39     217 ..      37     227 .. 0.89

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 1.7e-28
      Band_7   3 ieegevgvvvrfGklsr....vlepGlhfilPfgrsvtvvsvrvqtldvsvsltvptkDglpvtidvtviy..rvpddapklvaaveresanldnlirr 95 
                 ++ g +gv+  f++ls+    v++ G+hf +P++++ ++++vr+   ++    ++ tkD ++v ++ +v    +v +  pk+++++  + ++ ++++ +
  CCD25868.2  39 VKGGSRGVI--FDRLSGvkstVVGEGTHFLVPWLQKAVIYDVRTKPKSIAT--NTGTKDLQMVSLTLRVLHrpNV-NELPKIYQNL--GLDYDEKVLPS 130
                 88999****..7777777777******************************..*********9999999773366.**********..999******** PP

      Band_7  96 vlesalrevisemtleellsnreelaeelknelneqlrkyGvevldvritdidpppevaqalaakqaaeaea..............q 168
                 + +++l++++++++++el+  re + +++k el  +++++G+ ++dv+it+ ++ pe+ +a+++kq a+++a              q
  CCD25868.2 131 IGNEVLKSIVAQFDAAELITQREIVSQRIKSELSMRANEFGLRLEDVSITHMTFGPEFTKAVEQKQIAQQDAerakflvekaeqerQ 217
                 ************************************************************************999665543333333 PP

>> YdfA_immunity  SigmaW regulon antibacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.2   8.7e-06     0.052     147     281 ..     109     238 ..      71     258 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.7e-06
  YdfA_immunity 147 vtvranierlvGgageetiiarvGegivttiGsaeshkevlenPdsisktvlekgldagtafeilsidiadvdvgenigaklqadqaeadkkiaqa 242
                    v    +i + +G   +e ++  +G+ ++++i +  +  e++ + + +s+++ ++    +  f    + + dv++++      +  +a  +k+iaq 
     CCD25868.2 109 VNELPKIYQNLGLDYDEKVLPSIGNEVLKSIVAQFDAAELITQREIVSQRIKSELSMRANEF---GLRLEDVSITHM-TFGPEFTKAVEQKQIAQQ 200
                    33334566778999999*******************************99976544344444...567778888753.334456789999****** PP

  YdfA_immunity 243 kaeerramavakeqemkakvqemrakvveaeaevPkala 281
                     ae+ + +   +eqe +a+v +++ +   ae  + kala
     CCD25868.2 201 DAERAKFLVEKAEQERQASVIRAEGEAESAE-FISKALA 238
                    ********99*****9999987766654444.3555555 PP

>> Band_7_1  SPFH domain-Band 7 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.1e-05      0.13     153     207 ..     142     196 ..     121     200 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.1e-05
    Band_7_1 153 kipvldlaakseelaeklkealkeelaeyGlelekleienislpeevekaldkra 207
                 +  + +l ++ e +++++k+ l+ + +e+Gl le++ i+++++ +e +ka++++ 
  CCD25868.2 142 QFDAAELITQREIVSQRIKSELSMRANEFGLRLEDVSITHMTFGPEFTKAVEQKQ 196
                 4556778899999*************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       721  (0.0402142); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2214.47
//
Query:       CCD25869.2  [L=176]
Description: hypothetical protein NDAI_0G00930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-24   86.6  11.5      2e-24   86.2  11.5    1.1  1  MARVEL    Membrane-associating domain


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2  11.5   1.1e-28     2e-24       6     142 ..       6     138 ..       3     140 .. 0.89

  Alignments for each domain:
  == domain 1  score: 86.2 bits;  conditional E-value: 1.1e-28
      MARVEL   6 lgilrilqlvfaiiilgliasliakldqllgspssalnfavfvavfsfly.alfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrd 103
                 + +lr+l+ +f +i++gl ++l++++    +  +s++n+++f+ v+++l+ ++f++++++     f++ ++p+i++ +d+l++ +++va+++la g+r+
  CCD25869.2   6 DNLLRLLNAMFLVICIGLNSALLNTQ----QGHNSRINYCMFTCVYCLLTdSFFGILANF-----FEFLSFPFILFTLDFLNFSFTFVAGTVLATGIRS 95 
                 679********************444....55599***********************86.....79******************************** PP

      MARVEL 104 iscafe.......snqysasltvrcgqaqaavafgflavllfaasa 142
                 +sc+++       ++q+s   + rc+++qa vaf ++++++f++++
  CCD25869.2  96 HSCNNQsyldrnkITQGS---GNRCRESQALVAFFYFSMFIFLIKL 138
                 ****55566634455555...99********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       613  (0.0341904); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1416.61
//
Query:       CCD25870.2  [L=656]
Description: hypothetical protein NDAI_0G00940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3357  (0.187239); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.47
# Mc/sec: 4214.91
//
Query:       CCD25871.2  [L=213]
Description: hypothetical protein NDAI_0G00950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.5e-10   39.4  21.3    7.5e-10   39.4  21.3    2.0  2  SYF2      SYF2 splicing factor
  ------ inclusion threshold ------
      0.076   13.2   2.3       0.18   12.0   2.3    1.8  1  FYVE_2    FYVE-type zinc finger
       0.34   11.4  13.9       0.28   11.6   1.0    3.1  3  Ago_N_1   Fungal Argonaute N-terminal domain


Domain annotation for each model (and alignments):
>> SYF2  SYF2 splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.8       0.1     6e+02      47      82 ..       8      47 ..       1      65 [. 0.50
   2 !   39.4  21.3   1.3e-13   7.5e-10       3     146 ..      71     204 ..      69     208 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.1
        SYF2 47 kYkkqlkelkp...dleaYekqkekalekasavsk.eafy 82
                 Y+ +lk+lk    d+ + ++++++++ k++++s+  ++y
  CCD25871.2  8 VYEENLKALKRsvlDIITENRKRADQEVKEKSQSSkPKVY 47
                5555555555544444444444444433333333334444 PP

  == domain 2  score: 39.4 bits;  conditional E-value: 1.3e-13
        SYF2   3 gedlerkkalewsaeeaekwekkkkkkeknedagfsdyedaayrkYkkqlkelkpdleaYekqkekalekasavskeafyrtantlsladhkpseeavd 101
                 +e+  + k++++++ e e+w+k++k k +++ ++ sd ++ a+  Y+k+l++l+  le+ + +++++ +           +t n    ++ k++e  ++
  CCD25871.2  71 EEEKRKFKLMNYTIREYEEWDKQQKDK-QRKRVDGSDLTELATFTYEKELSKLNSKLENISHEQKHQIG----------VNTRN--GKLNVKDEERLLN 156
                 45666779**************99999.8888889*************************999999999..........12222..23567999***** PP

        SYF2 102 rlveklekqeekrkkfsrrrked...eegdvtYINerNkkFNkklerf 146
                 +lv++l++  +kr  +++++ ++    +   +Y  ++Nk+FN+kler 
  CCD25871.2 157 NLVNNLNETAKKRYMVRKKKLQSkasSDIAGNYFKDKNKQFNEKLERE 204
                 **************999999887644455569**************95 PP

>> FYVE_2  FYVE-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.3     3e-05      0.18       6      55 ..     131     180 ..     116     204 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3e-05
      FYVE_2   6 eeaehvlevvqrdeklrkkeeeRl.gelkeklekekskrellgnqaklget 55 
                 +e++h   v  r+ kl+ k+eeRl ++l+++l +e++k++ + +++kl+++
  CCD25871.2 131 HEQKHQIGVNTRNGKLNVKDEERLlNNLVNNL-NETAKKRYMVRKKKLQSK 180
                 6999999************99996489*****.788888888888888766 PP

>> Ago_N_1  Fungal Argonaute N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.012        72      13      54 ..      11      54 ..       7      65 .. 0.75
   2 ?   11.6   1.0   4.6e-05      0.28      10      50 ..      67     108 ..      58     130 .. 0.74
   3 ?    3.8   1.5     0.013        80       8      61 ..     145     199 ..     140     207 .. 0.72

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.012
                H-TT-.---HHHHHHHHHHHHH.HHHSTTTS----CCHHHHHHH CS
     Ago_N_1 13 eneke.qytlldWilecykqae.aarkaktkgkpsakdlnlfve 54
                en k+ + ++ld i e  k+a+ + +++++++kp + d+  + +
  CCD25871.2 11 ENLKAlKRSVLDIITENRKRADqEVKEKSQSSKPKVYDIKAVED 54
                5555447799*******999984566788889999999986554 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 4.6e-05
                 HHH.H-TT----HHHHHHHHHHHHHHHHSTTTS----CCHHH CS
     Ago_N_1  10 kfk.enekeqytlldWilecykqaeaarkaktkgkpsakdln 50 
                  f  e+ek ++ l+++ +  y++ ++++k k+++++   dl 
  CCD25871.2  67 DFSnEEEKRKFKLMNYTIREYEEWDKQQKDKQRKRVDGSDLT 108
                 454156788****************99988888777766664 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.013
                 SHHHHH-TT----HHHHHHHHHHHHHHHHSTTTS----CCHH.HHHHHH-HHHHC CS
     Ago_N_1   8 dpkfkenekeqytlldWilecykqaeaarkaktkgkpsakdl.nlfveknkdikd 61 
                 + + k++e+    l++ + e  k+    rk+k ++k+s++   n+f +knk+ ++
  CCD25871.2 145 KLNVKDEERLLNNLVNNLNETAKKRYMVRKKKLQSKASSDIAgNYFKDKNKQFNE 199
                 55666666666777777777777777888888888888764359******99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2054  (0.114563); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1497.71
//
Query:       CCD25872.2  [L=700]
Description: hypothetical protein NDAI_0G00960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.5e-234  779.8  44.6     3e-234  779.6  44.6    1.0  1  Utp8      Utp8 family


Domain annotation for each model (and alignments):
>> Utp8  Utp8 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  779.6  44.6  1.7e-238    3e-234       1     686 []       1     700 []       1     700 [] 0.93

  Alignments for each domain:
  == domain 1  score: 779.6 bits;  conditional E-value: 1.7e-238
        Utp8   1 mpslsepfrlaeLpriaslsnlseqvvvlqvasenfsessnkidvgisgsiIsqYilkptPkLiwsyplpsttivsccdvlekeense..elwlvglse 97 
                 mpsls+pfrl++Lp+iaslsn+s q +++qv++++f++++nk+ +g+sgs+IsqYi++ptPkLi++yp+pst+iv++cdvle++++++  e+w++gl +
  CCD25872.2   1 MPSLSQPFRLTVLPKIASLSNYSLQGDYIQVTKSTFNPTTNKVVIGVSGSAISQYIINPTPKLIFNYPIPSTNIVTACDVLENDNDNTnnEVWCFGLVA 99 
                 9*********************************************************************************99988788********* PP

        Utp8  98 rkkeskLlliekekee.........teddkteeetsseyevklkkkvvsikisskkk...qivvvlenGsielldfelklleslksskknkklvetfie 184
                 + k+++L+li+k+k++         + +d  ++++++e++vkl++k+v+iki++kk+   +i++vlenG+i++++++lkll+++k+++kn+k+ve+f e
  CCD25872.2 100 N-KTYTLTLITKDKQKssatmeddeDVVDVIDTTIKDEFNVKLDSKIVDIKIIKKKAddiSIMIVLENGLIQFFNSSLKLLNTVKINYKNVKFVEHFKE 197
                 *.66*********999999998887778899************************999999************************************** PP

        Utp8 185 deekelllvvsk..skkkvayklisledesskilelsstiledfklesakfcYqfGkLYqlkkdkkeisvyslpsfqlqktislpsiiekkeelvslkp 281
                 d +k++++++++  +++kv++kl+++  ++++++el+s+i+e+f+ ++akfcYqfGk+Y+l++++  ++vyslp+fql++t+++p+i ++++++vs+kp
  CCD25872.2 198 D-NKDFMFTICDlgDNNKVCIKLFQI--NNDSAIELNSIIMENFNGQNAKFCYQFGKFYKLTNNN--LMVYSLPQFQLEHTTTIPMI-KTDDQIVSMKP 290
                 *.66**********8889********..*************************************..********************.6********** PP

        Utp8 282 istnrvlLtvknkiyLldlkfesilserelthkktfqllksavvsvkgssttsktlalyvslknkknpttslevinidvGlgklkesLGKsltkse... 377
                 istnr+lLt++nkiyLldl ++silserelth k+ qll+sav+ + ++++  kt++++vs+k + npt+sle+in+dvG+++lk+sLGK++++ +   
  CCD25872.2 291 ISTNRILLTINNKIYLLDLIHNSILSERELTHLKSLQLLRSAVIGKGENNN--KTITIGVSTKFGVNPTSSLEIINVDVGSNTLKDSLGKCFQNLNlqn 387
                 ********************************************9999988..*****************************************99999 PP

        Utp8 378 ..etksknlksLfdedlkesskkdesl..........eleevlkkLkelkekkdiekfdsifvkflknkkefetekdrfvvdieFvekvldliFekf.. 462
                   + ++++lk+Lfd + + ++++d  l          +++e+l+kL+e  +++di kfd+if++++++kke++te+drf++++eF+ k++dliFekf  
  CCD25872.2 388 qiQISTQALKPLFDPNTDGDKDDD--LfkklvtkeqfNYDEILTKLSE--NTNDIGKFDEIFFQSFNIKKEHYTENDRFIYNHEFFLKLIDLIFEKFgs 482
                 88899********88777766655..33488999999**********9..************************************************* PP

        Utp8 463 .....edeefvPketLtYLLthPLFPleytkgLlkllkenprLlkqAivtCpnlplkeLlkelftikneelllDiilrilqdfsadeIkqelkkllqse 556
                      +++e+ Pk tLt+LLthPLFP+e+t++Ll++++++prL+kqAivtCpnlpl eLl+el+tikn+el+lDi+lrilqd+s+d+Ikqel++l    
  CCD25872.2 483 tattaQTNEY-PK-TLTFLLTHPLFPMERTQSLLSRFANHPRLFKQAIVTCPNLPLPELLNELLTIKNNELSLDISLRILQDYSKDSIKQELRNL---- 575
                 **********.**.*********************************************************************************.... PP

        Utp8 557 kskvdlenlinfliklnneeska..qlfqllslvlDsiGlfnleletlekLssiidekvealeansynLtlvsqvllkkkkkkakkkkventeLasLLk 653
                   ++++en+i+f+++ + +++++  qlfqll+lvlDsiGlf+l++++le+Ls++id++v+++e+n+ +  l++    + +++k      ++++  s   
  CCD25872.2 576 -PRLEIENFIDFILNDEIKDDQNspQLFQLLALVLDSIGLFALSDNILENLSAYIDRQVSIVEKNTELWYLIDSNNNIFSHNK------KDNSFSSASA 667
                 .****************9998889***************************************77655555543322221111......1222222222 PP

        Utp8 654 iknksalkekkkkdsqrerkkklpiYsvEkLei 686
                  +n++ ++ +++++++ ++k++lp+Ysv++Le+
  CCD25872.2 668 STNSKSNNISSNNKKSFTQKEALPMYSVDYLEL 700
                 23333334455566667**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1003  (0.0559429); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.29s 00:00:00.90 Elapsed: 00:00:00.47
# Mc/sec: 4518.67
//
Query:       CCD25873.2  [L=332]
Description: hypothetical protein NDAI_0G00970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-56  191.2   0.0    3.8e-56  190.9   0.0    1.1  1  TANGO2    Transport and Golgi organisation 2


Domain annotation for each model (and alignments):
>> TANGO2  Transport and Golgi organisation 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   0.0   2.1e-60   3.8e-56       1     252 [.       1     306 [.       1     307 [. 0.87

  Alignments for each domain:
  == domain 1  score: 190.9 bits;  conditional E-value: 2.1e-60
      TANGO2   1 MCIllftveahpkykLiLasNRDEflaRptkeaawweenseilsgrDle.......rkegGTWlGitkegrlAvLtNlreps.ekekkakkarsRGelv 91 
                 MCIll+t +ahp+y+LiL+sNRDEfl+R+t+  +w++ +  ils++D++       +k  GTWlGi+k+g++A+++Nl+ ++  + k+    +sRG+l+
  CCD25873.2   1 MCILLAT-TAHPDYELILISNRDEFLQRKTHTSCWHN-DDFILSPYDMAkeckyndKKVFGTWLGINKDGKIATVLNLKLNKsLSLKQLVAPKSRGMLP 97 
                 *******.***************************95.559*************99999******************988883334477899******* PP

      TANGO2  92 ldfL...tsseksseeyleelak...eakkyggFnLlvgdlkskelayisnrskeeeelsp..gvhglSNsll..ds...................... 158
                   +L   t+ ++ +++ +++++k     +++g+FnL++gd+k k++ ++++ +++ ++l+   +++++SN+ +  +                       
  CCD25873.2  98 FVYLsdmTEDSFAEWDGYDNFTKkypGLQSTGDFNLFYGDVKRKQYRIMDSIGNTVSTLNSncQYLVVSNDVFtcNGqlgelqsnikregkqpclqski 196
                 ****666455677789999999999999**************99*********7557774458**********65226788888999999999999999 PP

      TANGO2 159 .pwpKveegkkkleelveesve.ekseeelieellellsddtl.lpkdeel...eeleellssifippiee...........akkeYGTrtqtvilvdk 240
                  +w Kv+ g ++l++lv++s   +++e+++i+e+++l s+ ++  + d      ++ +   ++i +pp++            ++++YGTr+q+vil+++
  CCD25873.2 197 eTWGKVKLGTALLQSLVNKSIVeKQDEDTIISECFKLSSTCSVtVE-D-HCkfhQNSTLPNETILVPPLRCkitddvgtslpIGEYYGTRSQIVILIKR 293
                 88****************9987677788899**********98433.3.22356778889999****999458899******99*************** PP

      TANGO2 241 eg.kvtfiErtle 252
                    +v+f E+ ++
  CCD25873.2 294 GTyEVKFAEHVIY 306
                 988******9775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2433.70
//
Query:       CCD25874.2  [L=234]
Description: hypothetical protein NDAI_0G00980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1753  (0.0977746); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1647.15
//
Query:       CCD25875.2  [L=1054]
Description: hypothetical protein NDAI_0G00990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-79  267.8  28.2    1.9e-79  267.2  28.2    1.3  1  Sulfate_transp  Sulfate permease family
    4.1e-15   55.5   0.9    1.3e-14   53.9   0.9    1.9  1  STAS            STAS domain
  ------ inclusion threshold ------
      0.093   12.8   0.0       0.18   11.9   0.0    1.4  1  cNMP_binding    Cyclic nucleotide-binding domain


Domain annotation for each model (and alignments):
>> Sulfate_transp  Sulfate permease family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.2  28.2   3.2e-83   1.9e-79       2     380 .]     233     633 ..     232     633 .. 0.92

  Alignments for each domain:
  == domain 1  score: 267.2 bits;  conditional E-value: 3.2e-83
  Sulfate_transp   2 kgDliaGitvallaiPqalayal.lagl..ppiygL.........yssvvpqlvyalfGtsrqlavGpvavl......................s 62 
                     +++l+a+i+++ll i++al+y++ ++++  p++++L         +s++++q +++ +++s+   +G+++++                       
      CCD25875.2 233 IQYLPASILGLLLTILDALSYGMiIFPItePIFSHLgptgismfyISTIISQSIFSGGWSSFPCGIGSEMIEvtpffhtmafaikdalpegsndD 327
                     579********************9*****9******************************************77777555555555555555555 PP

  Sulfate_transp  63 livgeiiakvaeeepekgieiattltllaGviqvllGllRLgflveflseavlsGfiaGaaivillsqikvllglervskkeslvsvlsslftnl 157
                     +i+++++++v             ++++l+G+ ++ lG l Lg++v f+++++l+G+i+G++++++++ i+v++++    k++++++++ +lft++
      CCD25875.2 328 IITTTLFCYV-------------ISSMLTGLTFYSLGKLHLGKIVGFFPRHILIGCIGGVGYFLIITGIEVSTRVA---KFQYTIPFITHLFTDV 406
                     5555555555.............9***************************************************7...**************** PP

  Sulfate_transp 158 ekvnlakvvlgllllvvLlvtkellkklkkllvipapaelvavivatlvsaif....elkreagvki.....vgeipsglpelslpkvdwsllsa 243
                      +  l +++l+ ll+v+L+++++  +++   lv+p++++l++++++++v++i+    +++r  g+++       +   +++ ++l+kv+w l+ +
      CCD25875.2 407 VT--LWQWLLPTLLTVILIIAQKCAQNS---LVLPSFYILTLILFHFMVAIIPslslNQLRDSGWIFpqaatDSKWYDHYKLFNLHKVHWTLILK 496
                     66..99*****************88777...**********************99998899999995544444677799**************** PP

  Sulfate_transp 244 llpdalaialvglle......aiavsksldkkkgykvdsnkELvAlGfsNilsslfgglpatgafsrsavnikaGaktqlsglvsalvvllvllv 332
                     ++p++la++++g+l+      a+a+s+++d+     +d++kEL+A+G+sN++s++fg+++++ ++++s+++i+aGa+++l+g ++++++++++++
      CCD25875.2 497 QIPTMLALTFFGILHvpinvpALAMSLQMDR-----YDVDKELIAHGVSNFVSGMFGSIQNYLVYTNSVLFIRAGADSALAGHILIVLTIIIMII 586
                     *******************************.....*********************************************************** PP

  Sulfate_transp 333 ltplleyiPkavLaaiiivagkglLvelkelkklwk.lskldflillat 380
                     ++ ++++iP+++++++i+++g++lLve  +l++    +sk+++++++++
      CCD25875.2 587 GPVIISFIPICIVGSLIFLLGYELLVE--ALVDPLGkISKFEYITIVII 633
                     ***************************..88887777*******99985 PP

>> STAS  STAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.9   2.1e-18   1.3e-14       8     117 .]     695     804 ..     685     804 .. 0.93

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 2.1e-18
                 TTEEEEEEEEEESHHHHHHHHHHHHHHHHCCC........-SEEEEEEEEE..EEE-HHHHHHHHHHHHHHHHTT-EEEEES--HHHHHH..HHHTTCG CS
        STAS   8 egililrldgpidfanaesfkeklkravgeepervekkeslkslildlsav..sfiDssGvraLkeilkelkrigvevvlvnikpevrek..lektgff 102
                 e i++l+l++ ++f+++ s++ek+++ ++ +  +  +k ++k+lild++++  ++iD+s+++++++i++ ++++++++++++i+++ +    ++++g++
  CCD25875.2 695 EQIYVLKLQNLLFFGTIISIEEKIDKLLEISDMD-SSKHRIKYLILDFKNInaDNIDYSAAEGFNRIKRFTQTKRIRLIISSIRERDHIYnaFNNVGLL 792
                 4569**************************9644.4***************889********************************999999******* PP

                 GCC..SEEESSHHHH CS
        STAS 103 deveeeklfltvhdA 117
                 + v   +lf+++++A
  CCD25875.2 793 EGV---ELFNDLNSA 804
                 ***...****99987 PP

>> cNMP_binding  Cyclic nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.9e-05      0.18      18      87 ..     950    1022 ..     940    1024 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.9e-05
                    SEEEEEEES-EEEEEEETTS.EEEEEEE....-TTEEESH...HHHHHTS--SSEEEESSTEEEEEEEHHHHHHHHH CS
  cNMP_binding   18 dslyivlsGevrvyrlsedgkevvlavl....gpGdlfGe...lalltgeprtatvvAltdsellalprddflellq 87  
                    + ++iv+sG ++ + + ++g  ++ +++      G ++G      +l+   +  t+ + td+ l++++ d++ ++ +
    CCD25875.2  950 NFFFIVESGILKATFTLPSG--TLYETMsnrtCYGKILGSnneTTVLN--EQDLTIKTETDCNLWVIDMDALTRMRA 1022
                    568*****************..45555511115555555422133333..57889****************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1054 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1174  (0.0654805); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.27s 00:00:01.06 Elapsed: 00:00:00.44
# Mc/sec: 7179.01
//
Query:       CCD25876.2  [L=403]
Description: hypothetical protein NDAI_0G01000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.8e-106  354.9  18.3   4.4e-106  354.7  18.3    1.0  1  DUF5355   Family of unknown function (DUF5355)


Domain annotation for each model (and alignments):
>> DUF5355  Family of unknown function (DUF5355)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  354.7  18.3  2.5e-110  4.4e-106       2     329 .]      73     403 .]      72     403 .] 0.97

  Alignments for each domain:
  == domain 1  score: 354.7 bits;  conditional E-value: 2.5e-110
     DUF5355   2 sleneleivlidialiyqelalellneaiesseesnelWktsgsylkkglgllqflk.elakeakkqellsllnenslefkllqqlgiivlqlskLrkk 99 
                 +l +e++ +lidia+++++++l+ll++a+++++ s++lW++sg+ylk+glg+l++l+  ++k+++++++++l+n++slefkllqql+iivl+lskLr+k
  CCD25876.2  73 TLLDETIEILIDIAFYHENIILNLLQRAYDTPDLSSTLWSKSGCYLKNGLGILDYLSsLINKFQYHSKYYELMNQLSLEFKLLQQLSIIVLSLSKLRSK 171
                 7999*****************************************************8899************************************** PP

     DUF5355 100 iyknrn..vldfqeedlkelaknssllaklaIycldelkkcksdeskwseylkvlekYlealagLlLSleqYqkdelGiAiGliefsllslkkivpnsk 196
                 iy+++n  +ldfqeedl+ela+nss++ak++I+c + l +++++e k+  ++++l  Yl++l++LlLS++qY++de+GiAiG++e+s++sl+ i+p s+
  CCD25876.2 172 IYNEKNdaILDFQEEDLRELASNSSFYAKICIGCRELLFQHNKKEFKSLLLTTALGYYLDSLTFLLLSMDQYNNDECGIAIGMLEQSIKSLSGIIPLSE 270
                 *************************************************************************************************** PP

     DUF5355 197 ln..dsllkkkkkrdklKsklskkknetllsnlqsisslkikksafneksgellplllndLddflfdllilLrlkytkeNdnlkFdpiekddikldslw 293
                 ln  + ++k+ kk+d +K k+++kkn+  ++++    +   +k+ +n+++++l+p+l+++Lddf+++l++lLr++y+ +N++l+F+p+e+d++kl++++
  CCD25876.2 271 LNttILNEKTIKKKDIFKLKIQSKKNPLRMDSKI---TNYGTKTGKNNNNNTLIPVLQDSLDDFVIPLITLLRYRYNITNEKLSFKPVENDRTKLERFF 366
                 **555667899***************99999986...67899999****************************************************** PP

     DUF5355 294 PrGkkidlsgikwvfdpnelkeeeeeks.ysgrgaYY 329
                 PrGk +dl+g+kwvf++n+l +e +    + ++++Y+
  CCD25876.2 367 PRGKIPDLNGTKWVFHNNKLVQEGNIVIkHGQQTNYF 403
                 ************************9999788888998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       736  (0.0410508); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2881.71
//
Query:       CCD25877.2  [L=263]
Description: hypothetical protein NDAI_0G01010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-08   34.9   3.8    1.4e-08   34.9   3.8    1.9  2  COG2      COG (conserved oligomeric Golgi) complex component,


Domain annotation for each model (and alignments):
>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   3.8   7.6e-13   1.4e-08      11      97 ..      41     127 ..       3     174 .. 0.80
   2 ?   -2.8   0.0      0.36   6.4e+03      35      50 ..     205     220 ..     188     235 .. 0.53

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 7.6e-13
        COG2  11 pdFdpdqFvse.lrhgvpLeslrrdLeaylkllekellelvnedyadFvslSghLvglqeeleevesplaaarkkvesvreklseree 97 
                 ++Fd+d+F+ + + h+vpL++l rdL + ++++ ++l   vn dy ++++   +  + +e+ +e   +l+++r ++++++++l++  +
  CCD25877.2  41 KTFDVDEFLIKnNFHYVPLDTLIRDLSSLSEEVIDALFGQVNADYDEYLKFC-QIYSKDEAENETILDLQQTRLELKNFISHLEQLTS 127
                 89******999899************************************97.57777887777778888888888888888776543 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.36
        COG2  35 Leaylkllekellelv 50 
                 L + l++l++  +++ 
  CCD25877.2 205 LLETLTSLNSPYVHHL 220
                 3333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1047  (0.058397); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2049.09
//
Query:       CCD25878.2  [L=587]
Description: hypothetical protein NDAI_0G01020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-35  120.5   5.3    5.7e-35  120.5   5.3    3.0  3  Nup54           Nucleoporin complex subunit 54
    1.3e-23   83.6 138.6    4.8e-11   43.4  36.0    5.1  4  Nucleoporin_FG  Nucleoporin FG repeat region


Domain annotation for each model (and alignments):
>> Nup54  Nucleoporin complex subunit 54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   1.0         2   1.8e+04      38      47 ..      49      58 ..      40      62 .. 0.53
   2 ?   -3.3   9.7      0.98   8.8e+03      40      87 ..     265     319 ..     263     346 .. 0.65
   3 !  120.5   5.3   6.4e-39   5.7e-35       1     140 []     365     502 ..     365     502 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.4 bits;  conditional E-value: 2
                HHHHHHHHHH CS
       Nup54 38 vkaQqkevaq 47
                +++Qq++ +q
  CCD25878.2 49 QQQQQQQPQQ 58
                3333333333 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.98
                 HHHHHHHHHHHHHH......HHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHH CS
       Nup54  40 aQqkevaqhrerlk......eisdrleeleqkhqletsvrle.kakkrhvelshR 87 
                 +Qq++ +q++  l+      + s+++ + +++++++t  rl+ +++ ++++l+++
  CCD25878.2 265 QQQQQQQQQQPTLTtvqpsfSWSQQAPQQMNQQSQSTMPRLQaQIQMQQQQLQQQ 319
                 5677777777777722233333444444446677777777763566666666665 PP

  == domain 3  score: 120.5 bits;  conditional E-value: 6.4e-39
                 --TT--HHHHHHHHHT-SST.TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
       Nup54   1 kpagvdeekWeeAleenPdpeklvPvpvkGFedLakRvkaQqkevaqhrerlkeisdrleeleqkhqletsvrlekakkrhvelshRllrllrkleilr 99 
                 kp + ++e+W+ A+e++P+   ++P++++GFe L+ R ++Q ++vaq+r  l+++ ++ ++l+qkh+l+t++r+ kak+r+ve+++R+l+l ++++il+
  CCD25878.2 365 KPMNANQEEWNIAIENKPSN-DVIPIQIHGFEGLNVRNQLQIENVAQARVILNQVLEKSTQLQQKHDLDTAARILKAKSRNVEIERRILKLGSQISILK 462
                 68899*************77.9***************************************************************************** PP

                 T-SS---SSHHHHHHHHHHHHHHHS-HHH.HHHHHHHHHHH CS
       Nup54 100 srgyaldaeEeelrarletleaqlndpaqlkgrvnelwarl 140
                 +rg +l+ +Ee++++++++l ++ +dpa   g++nelwarl
  CCD25878.2 463 NRGVPLNINEEKMWSQFKQLLKKSEDPAA-LGKTNELWARL 502
                 ***************************99.9********96 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2  83.8    0.0085        76       2      91 .]      78     181 ..       4     181 .. 0.90
   2 !   36.7  26.8   6.6e-13   5.9e-09      20      91 .]     122     197 ..     120     197 .. 0.89
   3 !   43.4  36.0   5.3e-15   4.8e-11       1      86 [.     194     275 ..     194     284 .. 0.89
   4 !    9.8  21.6   0.00016       1.4       7      44 ..     239     277 ..     238     323 .. 0.48

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0085
  Nucleoporin_FG   2 lFG..........aaatstsgglFGststt.atstgglFGasstatatasggglfgat...sqtaasgglFGstnattqttatgglFGstaataq 82 
                     lFG          +++t+t+gglFG+++ + ++++g+lFG s+++t+ta  gglfg++   +q+++sgglFGs++++++   +gglFGs+++++q
      CCD25878.2  78 LFGnkstlggpsmQSNTNTGGGLFGQQQPQqQQQGGSLFG-SNATTNTAGRGGLFGNSsttQQQQPSGGLFGSNTNQPSV--GGGLFGSNQQQQQ 169
                     666666666788899999*********9999999999***.444444444447****9999999999*******998876..9*****9999998 PP

  Nucleoporin_FG  83 q...ttsgglFG 91 
                     +   +t+gglFG
      CCD25878.2 170 PavtATTGGLFG 181
                     89*999999**9 PP

  == domain 2  score: 36.7 bits;  conditional E-value: 6.6e-13
  Nucleoporin_FG  20 ttatstgglFGasstatatasggglfgat.sqtaasgglFGstnattqtta...tgglFGstaataqqttsgglFG 91 
                     t+++  gglFG+sst+++++ +gglfg++ +q++ +gglFGs+++++q++    tgglFG++ +  ++ tsgglFG
      CCD25878.2 122 TNTAGRGGLFGNSSTTQQQQPSGGLFGSNtNQPSVGGGLFGSNQQQQQPAVtatTGGLFGNKPQGLSTGTSGGLFG 197
                     445799*****8888888888889****98999999**********99987899*******9999999*******9 PP

  == domain 3  score: 43.4 bits;  conditional E-value: 5.3e-15
  Nucleoporin_FG   1 glFGaaatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqttatgglFGstaataqqtts 86 
                     glFG++++ tsgglFGs + t  ++gglFG+++++++t++++glfg+  +t+++gglFG+++ + +tt +gglFG++++++qq++ 
      CCD25878.2 194 GLFGNKPSGTSGGLFGSRAPT--TGGGLFGSNNNNQTTNTQTGLFGN--TTNTQGGLFGNPQGQGTTTPGGGLFGQQQQQQQQQQP 275
                     79*******************..9******7777777777778***9..8999************9999*******9999988554 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00016
  Nucleoporin_FG   7 atstsgglFGststt..atstgglFGasstatatasgggl 44 
                     +t+t+gglFG+++ +  +t++gglFG++++++++++ + l
      CCD25878.2 239 TTNTQGGLFGNPQGQgtTTPGGGLFGQQQQQQQQQQPT-L 277
                     34445555555555444444455555333333333333.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2179  (0.121535); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.75u 0.31s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 3728.62
//
Query:       CCD25879.2  [L=145]
Description: hypothetical protein NDAI_0G01030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-51  170.5   0.3    9.6e-51  170.2   0.3    1.1  1  Ribosom_S12_S23  Ribosomal protein S12/S23


Domain annotation for each model (and alignments):
>> Ribosom_S12_S23  Ribosomal protein S12/S23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.2   0.3   5.4e-55   9.6e-51       2     114 .]      32     144 ..      31     144 .. 0.98

  Alignments for each domain:
  == domain 1  score: 170.2 bits;  conditional E-value: 5.4e-55
                      -------S-TSSTTSSEEEEEEEEEEEE---TT--S-EEEEEEEET.TSEEEEEEE-SSS..----TT-EEEEEE--.....BTTSTTEEEEBE CS
  Ribosom_S12_S23   2 kelrkktksdalegapqkrGvvlekvtveakkPnsAlRkvvrvrLikngkevtafipgegalnfldEhdevlvrGirrkgkavkDlpGvrykvv 95 
                      + l+++ ks+++ g+++++G+vlek+++e+k+PnsA+Rk+vrv+Likngk+vtaf+p++g+lnf+dE+devl++G+++kgka++D+pGvr+kvv
       CCD25879.2  32 RLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGKKGKAKGDMPGVRFKVV 125
                      678899**************************************************************************************** PP

                      TS---TSSSTTTTT----T CS
  Ribosom_S12_S23  96 kvagvslkalskykkekpk 114
                      kv+gvsl al+k+kkekp+
       CCD25879.2 126 KVSGVSLLALWKEKKEKPR 144
                      *****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       361  (0.020135); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1121.67
//
Query:       CCD25880.2  [L=455]
Description: hypothetical protein NDAI_0G01040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0002   21.2   0.0    0.00049   19.9   0.0    1.7  1  LisH      LisH
  ------ inclusion threshold ------
        1.6    9.7   3.6         97    4.1   0.1    4.8  4  WD40      WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> LisH  LisH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   5.5e-08   0.00049       6      27 .]      13      34 ..      12      34 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 5.5e-08
                HHHHHHHHCT-HHHHHHHHHHT CS
        LisH  6 LIydYLvkeGyeetAeaFekEa 27
                L+  YL+k+G+++t ++F++Ea
  CCD25880.2 13 LVAQYLQKKGFKSTLASFLNEA 34
                899******************8 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.15   1.3e+03      21      37 ..     164     179 ..     140     179 .. 0.61
   2 ?   -0.3   0.0      0.27   2.4e+03      13      36 ..     198     225 ..     189     226 .. 0.55
   3 ?    0.2   0.1      0.19   1.7e+03       6      20 ..     297     323 ..     294     334 .. 0.57
   4 ?    4.1   0.1     0.011        97      13      38 .]     428     453 ..     391     453 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.15
                 TSSEEEEEETTSEEEEE CS
        WD40  21 dgawlasGsdDgtvriW 37 
                  + +  ++s+Dg++ i+
  CCD25880.2 164 GNYY-YTASMDGSLNIY 179
                 3333.57888**99886 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.27
                 EEEEE...EETTSSE.EEEEETTSEEEE CS
        WD40  13 vtsla...fspdgaw.lasGsdDgtvri 36 
                 +t ++   +  ++ w ++s + D+ +++
  CCD25880.2 198 ITNVKfwyNGNEKCWfIISTGLDHILKL 225
                 6666633223333445344455999886 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.19
                 EEESS.SSEEEEE...........EET CS
        WD40   6 tltGH.ssvtsla...........fsp 20 
                 +++ H +sv+++            ++ 
  CCD25880.2 297 EFSSHsFSVRAMTiiehsnpilssYDN 323
                 688896668888663333333333333 PP

  == domain 4  score: 4.1 bits;  conditional E-value: 0.011
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 v +l+ ++ g+ +a+G  +++v+ W+
  CCD25880.2 428 VKCLSSNRGGSAFAAGLANKSVHQWS 453
                 677777777777999966*****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3590.21
//
Query:       CCD25881.2  [L=390]
Description: hypothetical protein NDAI_0G01050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.5e-24   83.8   0.1    1.3e-23   82.8   0.1    1.6  1  LSM14           Scd6-like Sm domain
    7.4e-13   49.3   6.0    7.4e-13   49.3   6.0    3.1  3  FDF             FDF domain
    0.00048   20.2  30.9    0.00062   19.9  30.9    1.2  1  TFIIA           Transcription factor IIA, alpha/beta subunit
     0.0043   17.2   0.0     0.0092   16.1   0.0    1.6  1  SM-ATX          Ataxin 2 SM domain
  ------ inclusion threshold ------
      0.056   11.7   8.4      0.069   11.4   8.4    1.1  1  CDC45           CDC45-like protein
        4.9    7.6   6.2         25    5.3   0.9    2.7  2  FCSD-flav_bind  Flavocytochrome c sulphide dehydrogenase, fla
        5.6    5.4  17.9          7    5.1  17.9    1.1  1  Macoilin        Macoilin family


Domain annotation for each model (and alignments):
>> LSM14  Scd6-like Sm domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.1   5.3e-27   1.3e-23       1      74 [.       3      78 ..       3      79 .. 0.94

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 5.3e-27
       LSM14  1 efIGskislisksdirYeGilceinledstiaLqnvrsfGtegrk.dneq.ippskevyeyivFrgsDikdLevle 74
                ++IG++islis +d rY+G l  i++e+ t++L++vr+fGtegrk  +++ i p++++y+ + F+g+++kdL++le
  CCD25881.2  3 QYIGKTISLISVTDNRYVGLLEGIDSEKGTVTLNEVRCFGTEGRKgWGPDeIYPTNNIYKSVKFNGNEVKDLSILE 78
                79*****************************************55466667***********************97 PP

>> FDF  FDF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.2  16.2         7   1.8e+04      30      95 ..     136     200 ..     123     227 .. 0.55
   2 !   49.3   6.0   2.9e-16   7.4e-13       3     103 ..     231     324 ..     229     325 .. 0.91
   3 ?   -3.0   0.3       5.3   1.4e+04      74      92 ..     365     383 ..     359     389 .. 0.58

  Alignments for each domain:
  == domain 1  score: -6.2 bits;  conditional E-value: 7
                 XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXBXXBXXXXXXXEEEXTTXXEEEXXXHHHHHHHHHH CS
         FDF  30 klkeeklaknenaatatatneqpgekvegvdkkksffDkiSsegnergaqeheseedddwreerkl 95 
                  ++++++ ++ ++++    + ++ +++ ++ ++    +  S++++ r++q++++++++++ e ++ 
  CCD25881.2 136 HQQQAQQHQQ-QQEEPAPSAAAVHQEEPAPIASVPTEEVASQNEQPRKEQQQQQQQQQQHVEGEEP 200
                 3333333322.2333333344444444444444444445677777777777777777766554443 PP

  == domain 2  score: 49.3 bits;  conditional E-value: 2.9e-16
                 SSS---HCCCCCTSSCCHH.CCHHHCC-XXXXXXXXXX..XXXXXXXXXXXXXXXXXXXBXXBXXXXXXXEEEXTTXXEEEXXXHHHHHHHHHHH.HHT CS
         FDF   3 feeDFDFesanakFnkkev.feellkkaklkeeklaknenaatatatneqpgekvegvdkkksffDkiSsegnergaqeheseedddwreerklntetf 100
                 +++DFDF+s+nakF k+e+ + + +++a+  +   ++  + +t ta++ ++ +++  +++k sffD+iS++++++++          w+ee+ ln  tf
  CCD25881.2 231 PKSDFDFQSNNAKFTKQELsQSHHDAVAEPVASTIEQTIQTQTVTAQQAAQADPETFYNRKSSFFDTISTSTETNTNMR--------WQEEKVLNLDTF 321
                 679***************7256677899999988888888************************************999........************ PP

                 TXX CS
         FDF 101 Gvs 103
                 G++
  CCD25881.2 322 GQT 324
                 *97 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.3
                 EXTTXXEEEXXXHHHHHHH CS
         FDF  74 nergaqeheseedddwree 92 
                 n+++++ h s+++++++++
  CCD25881.2 365 NNNRNNYHSSNDGQQFQSQ 383
                 4445555555555555554 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9  30.9   2.4e-07   0.00062     124     326 ..     102     360 ..      69     389 .. 0.46

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 2.4e-07
       TFIIA 124 ppvqipagvtlqtasgqlykvnv.......qasgaqqiaaqplqqvvqq..sqgsaaqssvaalqaqsqqaqalaepqqq.lekqqqqqqqqqqqqqqq 212
                  ++  p +v +  a + +y  n         + + qq a+q++qq+ +   s ++++q++ a++++  +  +++++++q  +e+qqqqqqqqq      
  CCD25881.2 102 EQQAAPPQVPQAMAGYGVYAPNQggitstaDQYQHQQQAQQHQQQQEEPapSAAAVHQEEPAPIASV-PTEEVASQNEQPrKEQQQQQQQQQQ------ 193
                 3334444555555555555544455533334444445555555555333555556666666665555.2223333333331221111122222...... PP

       TFIIA 213 qvqqqqqeesqqaqqasqe.qvagsqvessqtdgaedaleeespvlegelsaeeeagaqkeelsreeidrire.......ealkakelekeskkkkrae 303
                 +v+ ++ +++ ++++++++ + + s++  sq+ + e       p  +++ ++++++ + k+els+++ d++ e       + ++ + +++++++++   
  CCD25881.2 194 HVEGEEPRRHDHHPHNNEHkNHSHSHTRRSQQRNIEI------PKSDFDFQSNNAKFT-KQELSQSHHDAVAEpvastieQTIQTQTVTAQQAAQA--- 282
                 2221111111122222111111112333333333321......222333333333333.5566666666662234433331122222222221111... PP

       TFIIA 304 essla...........................dlseilqlDGagddsde................................e 326
                                                 +++++l lD  g +s +                                 
  CCD25881.2 283 ----DpetfynrkssffdtiststetntnmrwQEEKVLNLDTFGQTSARpnfhggrggrgrgnyrgrggrgrgnyrgrggnR 360
                 ....012233344456666666667777777888888888888888877666666666666666666666666655555541 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.6e-06    0.0092       9      79 ..       2      75 ..       1      77 [. 0.89

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 3.6e-06
                HTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS...............-EEEEEEE-GGGEEEEX CS
      SM-ATX  9 tslvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkk..ans..kssspssgeipdtliikakdivdie 79
                 +++Gk++++    +++y G++ ++++  +  v+L+ +r   +   ++   ++   +++i++++ ++++++ d++
  CCD25881.2  2 SQYIGKTISLISVTDNRYVGLLEGIDS-EKGTVTLNEVRCFGTegRKGwgPDEIYPTNNIYKSVKFNGNEVKDLS 75
                578************************.79*************7633356999999999**********999987 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   8.4   2.7e-05     0.069     117     231 ..     135     299 ..      78     302 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.7e-05
       CDC45 117 eeereayealeeeeesd......eede..........eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeeesddddersrkrrrse.... 195
                 +++++a ++ +++ee        +  +           ee  +++++ ++e+++++++++++ e e + +r+ +++ ++++++++++s+ rr ++    
  CCD25881.2 135 QHQQQAQQHQQQQEEPApsaaavH--QeepapiasvpTEEVASQNEQPRKEQQQQQQQQQQHVEGE-EPRRH-DHHPHNNEHKNHSHSHTRRSQQrnie 229
                 222222222222222222233331..0335677655422222222222222222222222222222.22222.22222223333333333333334667 PP

       CDC45 196 ..................................psakklrrqlkkerrkyeavlekyysqgtsygesvs 231
                                                   + +++ + q+ ++++  +a  e+ y++ +s+   +s
  CCD25881.2 230 ipksdfdfqsnnakftkqelsqshhdavaepvasTIEQTIQTQTVTAQQAAQADPETFYNRKSSFFDTIS 299
                 8999999999999999999999999999998887778888888999999999999999999999887777 PP

>> FCSD-flav_bind  Flavocytochrome c sulphide dehydrogenase, flavin-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.9    0.0099        25      19      55 ..     114     148 ..     111     155 .. 0.64
   2 ?    4.5   0.7     0.018        45      20      59 ..     153     192 ..     148     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0099
  FCSD-flav_bind  19 isVagvYrykdgkivevegsggvspldasaalrarea 55 
                     +  +gvY++++g+i++ ++ +   +++a +++++++ 
      CCD25881.2 114 MAGYGVYAPNQGGITSTAD-QYQHQQQA-QQHQQQQE 148
                     5557999999999999977.44444444.34443333 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.018
  FCSD-flav_bind  20 sVagvYrykdgkivevegsggvspldasaalrareaeyaa 59 
                     s a+v++ +   i++v+ +   s+ + +++ ++++ ++++
      CCD25881.2 153 SAAAVHQEEPAPIASVPTEEVASQNEQPRKEQQQQQQQQQ 192
                     7799**************8888888887777766666655 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  17.9    0.0027         7     205     365 ..     136     303 ..     128     374 .. 0.53

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0027
    Macoilin 205 eqqlldkeereaeeqlaaakelvevdpvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehn..esvdsklqekeymenkskskrlsks 301
                  qq +++++++ ee + +a+++ + +p  ++   ++   +++++   e ++++++++++  + ++ ++h+h+  ++ ++++++ +   ++ ++ ++ ks
  CCD25881.2 136 HQQQAQQHQQQQEEPAPSAAAVHQEEPAPIASVPTEEVASQNEQPRKEQQQQQQQQQQHV-EGEEPRRHDHHphNNEHKNHSHSHTRRSQQRNIEIPKS 233
                 456677777777777777777777776666665555444333333333333322222222.22222232222121111122222222222222222222 PP

    Macoilin 302 essgsesellveesvkskssssssssn.............knskkasagsagssnssskkhsessksvtssssskns 365
                 + + ++++ +++++  s+s       +             ++ ++++ ++ +++++ ++++ ++++s  ++ s++ +
  CCD25881.2 234 DFDFQSNNAKFTKQELSQS-------HhdavaepvastieQTIQTQTVTAQQAAQADPETFYNRKSSFFDTISTSTE 303
                 2222222222222211111.......111233334444447777777777788888888887777776544433322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2624  (0.146355); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                       114  (0.00635841); expected 17.9 (0.001)
Passed Fwd filter:                        39  (0.00217525); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.93u 0.36s 00:00:01.29 Elapsed: 00:00:00.49
# Mc/sec: 2414.35
//
Query:       CCD25882.2  [L=402]
Description: hypothetical protein NDAI_0G01060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-25   88.3   1.2    6.8e-25   86.6   0.2    2.3  2  DASH_Dam1  DASH complex subunit Dam1
  ------ inclusion threshold ------
       0.15   12.1   3.5       0.41   10.7   3.5    1.7  1  DUF1192    Protein of unknown function (DUF1192)
        0.4   10.5   2.1          1    9.2   2.1    1.7  1  Sas6_CC    Sas6/XLF/XRCC4 coiled-coil domain


Domain annotation for each model (and alignments):
>> DASH_Dam1  DASH complex subunit Dam1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.2   1.1e-28   6.8e-25       1      56 []      96     151 ..      96     151 .. 0.98
   2 ?   -0.7   0.1      0.21   1.3e+03       3      20 ..     162     179 ..     160     187 .. 0.75

  Alignments for each domain:
  == domain 1  score: 86.6 bits;  conditional E-value: 1.1e-28
   DASH_Dam1   1 lepafaeLaDsletLdknledLqqihesLsdfNeSFasfLYGLnmnafcvdFpeaP 56 
                 l p+++eL++s+ tLd+n+++L+ ihesL+d+NeS++s+LYGL++n++cv+Fp++P
  CCD25882.2  96 LLPQIQELTESMVTLDTNFTRLNFIHESLVDLNESVGSLLYGLMCNSWCVEFPNVP 151
                 679***************************************************99 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.21
   DASH_Dam1   3 pafaeLaDsletLdknle 20 
                 +++++L+D+ + L+++l 
  CCD25882.2 162 KRLENLKDEKKRLQRQLA 179
                 578889999888888765 PP

>> DUF1192  Protein of unknown function (DUF1192)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.5   6.9e-05      0.41      26      54 ..     161     189 ..     156     190 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6.9e-05
     DUF1192  26 eerIalLeaEIaRleaaiakkkasraAAe 54 
                  +r + L++E +Rl++++a+ k++raAA+
  CCD25882.2 161 MKRLENLKDEKKRLQRQLAAVKDHRAAAQ 189
                 589*************************6 PP

>> Sas6_CC  Sas6/XLF/XRCC4 coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   2.1   0.00017         1      12      26 ..     164     178 ..     164     180 .. 0.92

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00017
                 HHHHHHHHHHHHHHH CS
     Sas6_CC  12 LkslKeeKqlLeqkL 26 
                 L +lK+eK++L+++L
  CCD25882.2 164 LENLKDEKKRLQRQL 178
                 789***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1314  (0.0732891); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2902.67
//
Query:       CCD25883.2  [L=391]
Description: hypothetical protein NDAI_0G01070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-45  155.7   0.1      2e-45  155.2   0.1    1.2  1  SURF1     SURF1 family
      0.005   17.0   0.0      0.012   15.7   0.0    1.6  1  ig        Immunoglobulin domain


Domain annotation for each model (and alignments):
>> SURF1  SURF1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   0.1   2.2e-49     2e-45       2     176 .]      84     355 ..      83     355 .. 0.86

  Alignments for each domain:
  == domain 1  score: 155.2 bits;  conditional E-value: 2.2e-49
       SURF1   2 vpvvvlfgLGtWQlqRlkwkealiaeleerlaaeplplleka.lealeefeyrrvtvtGrfdhdkevlvgngqprv.....Gylvltplrleddgeavl 94 
                 +p v++f+LGtWQl+Rlkwk++lia++e++l++ep+pl+++   +++e++eyr+v ++G+f hd+e++vg   pr+     Gyl++tp+ ++d ge+v+
  CCD25883.2  84 MP-VISFYLGTWQLRRLKWKTRLIATCETKLTYEPIPLPKNFtVDMCEDWEYRKVILKGEFLHDQEMFVG---PRSkngtkGYLLFTPFIRADTGEKVM 178
                 67.9*********************************98887888889**********************...88777888**********777***** PP

       SURF1  95 VnrGWvpaeaeklpka........apegeevrevtGllr....kss.tp.ape.eesgewqvqsidvaalaealgaqkvlpvvl............... 163
                 ++rGW+++  ek+p +         p+g++v+ v++++r    +++ ++ + e ++s+ w  q++dv ++a+++g   ++p+++               
  CCD25883.2 179 IERGWIAE--EKIPPEnrtlhhlsLPQGKNVE-VVCMVRppkeRGQfQWaK-EdKNSRLW--QVADVWDMAKTSG---CAPIHFqaiydmkdhpitpea 268
                 ********..5664445556677766666666.******875544455553.33788888..***********87...777774455666666777777 PP

       SURF1 164 ..........................................................................hlgYaltWfglaa 176
                                                                                           hl+Y++tW+gl++
  CCD25883.2 269 pnnfakqqeqlapfwkfwakkdignhiketqvtvasekplrkmndddtaefnefqfikagvpigkkptidlrnaHLQYLVTWYGLSL 355
                 8888888888888888999999999999999999***************************************************95 PP

>> ig  Immunoglobulin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.4e-06     0.012       6      60 ..     199     254 ..     195     257 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.4e-06
                 EEEETTS-EEEEEEEESSSCTSEEEEEESSSSCSEEEE.EEEEETTCEEEEEEEEC CS
          ig   6 vlvleGesatLtCsvstqtkptdvtWkkegqtkiesqk.vvkegnrrkgsssllis 60 
                 +++++G++++  C v++ ++  ++ W ke++ + ++q  +v++ ++++g ++++++
  CCD25883.2 199 LSLPQGKNVEVVCMVRPPKERGQFQWAKEDKNSRLWQVaDVWDMAKTSGCAPIHFQ 254
                 67899*********************************999999999998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 3027.23
//
Query:       CCD25884.2  [L=404]
Description: hypothetical protein NDAI_0G01080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0083   16.5   0.0       0.02   15.3   0.0    1.6  1  Acetyltransf_7  Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.1e-06      0.02      25      74 ..     119     180 ..      90     182 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.1e-06
                     TCTEEEEE-GGGTTSSHHHHHHHH.......TTSEEE...........EEEEEETHHHHHHHHHHTTE CS
  Acetyltransf_7  25 aeitrlaVdpeyrgkGiGraLlea.......aekgii...........leqlelnaekaikfYeklGF 74 
                      +i+++++ + +r++G++r ++e        +    +           l + +l + +  ++Yek G+
      CCD25884.2 119 VCIGGVFTPEMHRRNGYARVMIEKlnqhydkI----RdspnappllknL-VINLYS-EVDEYYEKVGY 180
                     567779****************9644334330....2444455543331.223322.2344******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 3000.47
//
Query:       CCD25885.2  [L=456]
Description: hypothetical protein NDAI_0G01090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-21   76.0   2.2    5.9e-21   75.3   2.2    1.4  1  Abhydrolase_1  alpha/beta hydrolase fold
    2.4e-13   51.2   0.0    3.2e-13   50.8   0.0    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    8.5e-08   31.7   0.0    2.2e-06   27.2   0.0    2.6  3  Hydrolase_4    Serine aminopeptidase, S33
    4.6e-06   26.6   0.0    9.6e-06   25.6   0.0    1.4  1  Ser_hydrolase  Serine hydrolase
  ------ inclusion threshold ------
      0.013   14.2   0.0      0.028   13.1   0.0    1.5  1  Ndr            Ndr family
      0.026   14.0   0.1       0.89    9.0   0.0    2.2  2  DUF2034        Protein of unknown function (DUF2034)
      0.062   12.8   0.1       0.16   11.5   0.0    1.7  2  LIDHydrolase   Lipid-droplet associated hydrolase
        0.2   11.4   1.5       0.35   10.6   0.8    1.6  2  AbLIM_anchor   Putative adherens-junction anchoring region of


Domain annotation for each model (and alignments):
>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   2.2   2.6e-24   5.9e-21       2     256 ..     164     438 ..     163     439 .. 0.89

  Alignments for each domain:
  == domain 1  score: 75.3 bits;  conditional E-value: 2.6e-24
                    EEEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHH..........SHHHHHHHHHHH..HHHCTTSSEE.EEEETHHH CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddy..........gtasvaddldri..ldalgddklt.lvGhSmGG 84 
                    +l+++hG++++++ +++++    L  ++++++++Dl+G+gyS++ +  +   +          +++ + ++  ++  ++ l+  k + +v+hS+G 
     CCD25885.2 164 HLIFIHGYGAGLGFFIKNLENIPLLNNRWCIHAIDLPGYGYSTRNKKFP---FkyprdsqlkvQNWFHDKIHIWLqkRNLLNYPKNNlIVAHSLGA 256
                    89********************************************833...344777777779999999988999******************** PP

                    HHHHHHHHHHGGGEEEEEEESE.CSSCCHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHCHHHCCHH.HHHHHC CS
  Abhydrolase_1  85 mialayaaeyperVkalvllga.idpaaslieaqrqqaksfpdffdgyaadcarnpagplladelaaleqrhrlvdalkfpdkskrfps.sgsdna 178
                     ++++ya ++p++ ++l+++++   +++s+ +++    +++ + +d ++ ++   +   +++++ +  +++ r  ++l   +  k+f+  ++++++
     CCD25885.2 257 YLMAQYAFKFPSHFQKLIMCSPaGVTKSSIKKLNNSPPWWYEKLWDLNFSPFSIVRNSGIYGSKITSAWSYRR-FKPL--DLDHKQFEAlHRYAYS 349
                    **********************977777888888888888888888889988888888888888888888855.6889..**************** PP

                    HHHHHHHHHHHHHHHHCCHHHHHHHHHC.......THHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS.....EEEEEEETCSSSHHHHS CS
  Abhydrolase_1 179 sslatgalksieqwpttdsaklllrlre.......lknvlaptlvisgtsDplvppkaledlaqllpk.....krlvvisdagHlafleg 256
                    + +  g  +++ ++   + ++   +l+        l+  l+++ +i+g++D+++ ++a++ ++   ++     + ++vi+ agH ++l++
     CCD25885.2 350 IFNRPGCGEYLLSFILSCGGNPRFSLEDtlfqrenLSTELCDWGWIYGDNDWMDINGAKRVSRLI-NEqqkgkSDVHVIPSAGHHLYLDN 438
                    ***********************99999**************************99999888744.333555699************997 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   1.4e-16   3.2e-13       1     218 [.     165     443 ..     165     445 .. 0.63

  Alignments for each domain:
  == domain 1  score: 50.8 bits;  conditional E-value: 1.4e-16
                    EEEE--GC.....GCHHHH..HHHHCCTCEEEEE--TTST...S-GGCS--HHHCHHH...HHHHCCTT...........TTSEEEEEETCHHHHH CS
  Abhydrolase_6   1 vlllHGagssassWlvapL..aallaagvhvlapDlpGhG...rsdpppldledladl...aalldelaa.........gggpvvlvGHSlGGala 79 
                    ++++HG g++ + +   +L   +ll+ +++++a+DlpG+G   r+   p+ +++  +l     + d++            +++  +v+HSlG++l+
     CCD25885.2 165 LIFIHGYGAGLGFF-IKNLenIPLLNNRWCIHAIDLPGYGystRNKKFPFKYPRDSQLkvqNWFHDKIHIwlqkrnllnYPKNNLIVAHSLGAYLM 259
                    79***977665555.4566779******999*********87755666677777333332233555554477677777566666************ PP

                    HHHHHCC........EE.EEES-....................----TTTS----TTHHHHHHTT-CCCCHCCH....S-HSCCCCHHHC.CCCHC CS
  Abhydrolase_6  80 laaapla......lvvg.vlldp..............pp....talpagllaaalelllallallrllawlsre....plprlfladeda.daawr 145
                    ++   +a      +  + ++ +p              pp      +++ + ++ +    + +++ ++ aw+ r+    +l++   ++ +a +++  
     CCD25885.2 260 AQ---YAfkfpshF-QKlIMCSPagvtkssikklnnsPPwwyeKLWDLNFSPFSIVRNSGIYGSKITSAWSYRRfkplDLDH---KQFEAlHRYAY 348
                    **...999977642.3347777766666665555555444555555555555555555566666666899976555332222...22221223333 PP

                    HCCCGHH................HHCCHHCHTTCCHHTT-TTGCEEECTT-C........HHHHCHHCCCHSTTEEETCE...SSS-HHHHSHHHH CS
  Abhydrolase_6 146 arlarla................allaglgllpaaawadlpvpllvlggeDp........lvprllerllaqagarlpvvlpgaGHlphleepdev 217
                      + r+                 ++   + l+ ++++ + ++ + +++g+++         v rl+ +     + ++ +v+p aGH+++l++ +++
     CCD25885.2 349 SIFNRPGcgeyllsfilscggnpRFSLEDTLFQRENLSTELCDWGWIYGDNDwmdingakRVSRLINEQQK-GKSDV-HVIPSAGHHLYLDNYKDF 442
                    33333335666666666555553333344466789999999999777655553777666666688888888.99999.************666776 PP

                    H CS
  Abhydrolase_6 218 a 218
                    +
     CCD25885.2 443 N 443
                    5 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.15   3.4e+02     101     155 ..      50     109 ..      43     130 .. 0.66
   2 !   27.2   0.0   9.6e-10   2.2e-06       6     118 ..     164     291 ..     160     314 .. 0.78
   3 ?   -0.6   0.0      0.29   6.6e+02     197     237 ..     395     437 ..     393     438 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.15
  Hydrolase_4 101 vaglilsaPalkikakl.....k.appllklllkllgkllpklqvsnnlkadslsrdpevv 155
                   +  ils+Pa   k ++     + a pll++  + l kl+p+   ++  + +  ++dpe++
   CCD25885.2  50 TTTTILSSPATTTKINTiaptpPtAIPLLRI-ITSLPKLFPRSIKQSIQDYKIFQKDPERL 109
                  55789*****998877666554334444443.44455556665556666777777777765 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 9.6e-10
  Hydrolase_4   6 vvvlvHGlaehsgryaelaea..LaaqGfavyalDhrGhGrse.........gkrghvpsfddyvdDlaafvekvkeehpelplfllGhSmGGliall 92 
                   ++++HG++   g + +  e+  L ++ + ++a+D  G+G s          ++  +++  + + d ++  ++k    +  ++  +++hS+G+++ ++
   CCD25885.2 164 HLIFIHGYGAGLGFFIKNLENipLLNNRWCIHAIDLPGYGYSTrnkkfpfkyPRDSQLKVQNWFHDKIHIWLQKRNLLNYPKNNLIVAHSLGAYLMAQ 261
                  678999999999999997776457899999******************999766666655555566666667777755555566889*********** PP

  Hydrolase_4  93 yllrypdkvaglilsaPalkikakl....k 118
                  y+ + p+++++li+++Pa   k+++    +
   CCD25885.2 262 YAFKFPSHFQKLIMCSPAGVTKSSIkklnN 291
                  ******************877766443332 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.29
  Hydrolase_4 197 lhGeaDkvvdpeas..relyerlgskdktlklypglyHellnE 237
                  ++G++D+   ++a+   +l++++++ +  ++++p + H l  +
   CCD25885.2 395 IYGDNDWMDINGAKrvSRLINEQQKGKSDVHVIPSAGHHLYLD 437
                  6888888776666667899999999999**********99766 PP

>> Ser_hydrolase  Serine hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   4.3e-09   9.6e-06      22      96 ..     214     285 ..     198     296 .. 0.86

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 4.3e-09
                    HHCCTEEEEEC--TS--HHHHHHHHHHHHHC-STTEEEEEETCHHHHHHHHHHHTTSSSEEEEEEET--SGGS.. CS
  Ser_hydrolase  22 klpaarrveqadwlkPdledWvaaleaaveaaeekvvlvAHSlgclavlhaaelqlakkvagalLVapadveeea 96 
                    k+p +++++ ++w + +++ W+++  +++ + +++ ++vAHSlg+ +++++a  + +++ ++ ++ +pa v+++ 
     CCD25885.2 214 KYPRDSQLKVQNWFHDKIHIWLQK--RNLLNYPKNNLIVAHSLGAYLMAQYA-FKFPSHFQKLIMCSPAGVTKSS 285
                    789999****************95..8899999999****************.****************997554 PP

>> Ndr  Ndr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.2e-05     0.028      46     142 ..     182     288 ..     175     304 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.2e-05
                 SHHHHHHHTTSEEEEEE-TT-STT-..----TT-----....HHHHHTTHHHHHHHHT-....--EEEEEETHHHHHHHHHHHHSGGGEEEEEEES--- CS
         Ndr  46 sesmaeilekfvilhvdaPGqeega..aslpedyqfps....lddladqllavldhfkl....ksviglGvgaGAyilarfalkhperveglvLinits 134
                 +e++ ++ ++ +i  +d PG    +  +++p  y+  s     +   d++   l++ +l    k+ + +    GAy++a++a k+p+  + l++ ++ +
  CCD25885.2 182 LENIPLLNNRWCIHAIDLPGYGYSTrnKKFPFKYPRDSqlkvQNWFHDKIHIWLQKRNLlnypKNNLIVAHSLGAYLMAQYAFKFPSHFQKLIMCSPAG 280
                 478888888999999999987655411445444433331110233467888888887764445566788899**********************99999 PP

                 S---HHHH CS
         Ndr 135 kaagwvew 142
                  +++ ++ 
  CCD25885.2 281 VTKSSIKK 288
                 98887765 PP

>> DUF2034  Protein of unknown function (DUF2034)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.1     0.036        80     117     150 ..      45      80 ..      25     111 .. 0.74
   2 ?    9.0   0.0    0.0004      0.89      85     143 ..     231     292 ..     199     301 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.036
     DUF2034 117 kk.rkstlmilvspkllTk.salklldklnipliyl 150
                 k+ +++t  il+sp   Tk ++++    ++ipl+ +
  CCD25885.2  45 KRsTTTTTTILSSPATTTKiNTIAPTPPTAIPLLRI 80 
                 23488999*******999855667667777777655 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0004
     DUF2034  85 lkVlvqCkalkkkikpkei.rELsGsfsshkakkk..rkstlmilvspkllTksalklldkl 143
                 +++  q ++l + +k ++i     G++ + + + k  ++ + +i++sp  +Tks++k l+++
  CCD25885.2 231 IHIWLQKRNLLNYPKNNLIvAHSLGAYLMAQYAFKfpSHFQKLIMCSPAGVTKSSIKKLNNS 292
                 5555666666555555544134458888888887844444458****************987 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   3.4e+03     141     168 ..      71      99 ..      50     113 .. 0.65
   2 ?   11.5   0.0     7e-05      0.16      70     119 ..     229     278 ..     163     293 .. 0.64

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
  LIDHydrolase 141 pflalvvglllrvl.kllPesvksllikl 168
                   p+ a+ +  +++ l kl+P+s+k+++ + 
    CCD25885.2  71 PPTAIPLLRIITSLpKLFPRSIKQSIQDY 99 
                   44555555566677888999888877654 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7e-05
  LIDHydrolase  70 dflkellek.aksekdvklilvGHSvGaYialevlkrlsersikkvvlLfP 119
                   d+++  l+k +  ++ ++  +v+HS GaY++ + + +++++ ++k+++  P
    CCD25885.2 229 DKIHIWLQKrNLLNYPKNNLIVAHSLGAYLMAQYAFKFPSH-FQKLIMCSP 278
                   4444444443334566667799*****************98.999988777 PP

>> AbLIM_anchor  Putative adherens-junction anchoring region of AbLIM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.8   0.00016      0.35     111     154 ..      21      62 ..       4      75 .. 0.73
   2 ?   -2.3   0.0       1.4   3.1e+03     311     358 ..     198     252 ..     187     253 .. 0.55

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00016
                   XXXX..XXXX.XXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX. CS
  AbLIM_anchor 111 tysrhgytPtlsrsPqhysrpggsesgrsspslsqlsdsrsstp 154
                      r+  tP  + sPq +++++g+es+rs+ + +++ +s  +t 
    CCD25885.2  21 KRDRKLQTP--QTSPQIFQNKEGNESKRSTTTTTTILSSPATTT 62 
                   567888899..7*******************9999844333332 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.4
                   XXXXXXXXXXXX..XXXXXXXXXXXXX............X.XXX--.---HHHHSGGG CS
  AbLIM_anchor 311 sLpgygrnglkrpqsadlaqyeadsss.........svnw.gtreykiYPYEaLiVtn 358
                   +Lpgyg  + +++   ++ +   ds+            +w ++r+   YP + LiV++
    CCD25885.2 198 DLPGYGYSTRNKKFPFKYPR---DSQLkvqnwfhdkIHIWlQKRNLLNYPKNNLIVAH 252
                   79999988644433333333...22221112222223345566666778888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       461  (0.0257125); expected 358.6 (0.02)
Passed bias filter:                      362  (0.0201908); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:01.03
# Mc/sec: 1338.13
//
Query:       CCD25886.2  [L=413]
Description: hypothetical protein NDAI_0G01100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-40  137.1   2.1    3.8e-40  136.6   0.4    1.9  2  Cyclin_N  Cyclin, N-terminal domain
    1.3e-18   67.2   0.3      3e-18   66.0   0.2    1.8  2  Cyclin_C  Cyclin, C-terminal domain
  ------ inclusion threshold ------
      0.093   11.5   0.0      0.093   11.5   0.0    1.6  2  BTV_NS2   Bluetongue virus non-structural protein NS2


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.4   6.3e-44   3.8e-40       1     126 [.     144     272 ..     144     273 .. 0.97
   2 ?   -0.6   0.1      0.17     1e+03      36      93 ..     279     336 ..     276     364 .. 0.62

  Alignments for each domain:
  == domain 1  score: 136.6 bits;  conditional E-value: 6.3e-44
                 HHHHHHHHHHCHTS-STTCT...TCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HH CS
    Cyclin_N   1 dilknlieqelkflpkpdyl...dqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkle 96 
                 di+++l e+e+ ++p+++yl   +++ +++p+mRailidwlvev+ekf+  +etlfl +n++dRfls ++v+ +klql+++t++++AaK+ee++ pkl+
  CCD25886.2 144 DIFQYLYEKEISMVPTHNYLldsNSKYHIRPSMRAILIDWLVEVHEKFHYANETLFLGINIMDRFLSFNKVTVTKLQLLAVTSMFIAAKFEEVKLPKLS 242
                 89******************96555566*********************************************************************** PP

                 HHHHHTTTSS-HHHHHHHHHHHHHHTTT-- CS
    Cyclin_N  97 dlvyitdeafteeeilemErliLetLnfdl 126
                 ++ yitd+a ++++i+++E++iL+ Lnf++
  CCD25886.2 243 NYSYITDGAASNNDIKNAELYILKNLNFNI 272
                 *****************************8 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.17
                 HHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS-- CS
    Cyclin_N  36 dwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeispp 93 
                 ++l +++++ k + +t f+   +l+ +++++++   k  ++ a ++++A  +   +  
  CCD25886.2 279 NFLRRISKVDKYDFQTRFIGKFLLEYLMCSHKFISLKSSMLSAIAMYVARMITSPKLK 336
                 5666666666666667777777777777777777777777777777777666555433 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.4   8.4e+03      46      58 ..     221     233 ..     203     249 .. 0.70
   2 !   66.0   0.2   5.1e-22     3e-18       1     116 [.     275     392 ..     275     395 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.4
                 HHHHHHHHHCCHH CS
    Cyclin_C  46 liAaaalllarst 58 
                 l+A +++++a + 
  CCD25886.2 221 LLAVTSMFIAAKF 233
                 5777777777665 PP

  == domain 2  score: 66.0 bits;  conditional E-value: 5.1e-22
                 --HHHHHHHHHCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHH.HS--S-HHHHHHC.---HHHH....HHHHHHHHHHHHHH CS
    Cyclin_C   1 ptplsFlrrflkaadasedselrtlakylleltlldydflsyppSliAaaalllarstl.nspewtetlehyt.gyskedl....kpcvelilellssa 93 
                 p p++Flrr++k++++  d ++r + k+lle+ ++ ++f+s + S++ a a+++ar +   + +w++t+ hy+  ++ e+     ++c+eli+e +  +
  CCD25886.2 275 PNPMNFLRRISKVDKY--DFQTRFIGKFLLEYLMCSHKFISLKSSMLSAIAMYVARMITsPKLKWDNTCIHYSgDIDAENCqafeENCQELIEEIV--N 369
                 89***********999..999*************************************844455*********87877776222346999999999..9 PP

                 HGSS--HHCCCCTCGGGCCCGGS CS
    Cyclin_C  94 pssklqavrrkyssskfhkvstl 116
                 p+ +  +  +ky+++kf+++ + 
  CCD25886.2 370 PTITIDSLITKYKKPKFNAIYFK 392
                 9*9**************998765 PP

>> BTV_NS2  Bluetongue virus non-structural protein NS2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.5      0.35   2.1e+03     230     261 ..      73     102 ..      58     130 .. 0.61
   2 ?   11.5   0.0   1.6e-05     0.093     272     319 ..     296     344 ..     286     373 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.35
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     BTV_NS2 230 erdegdrdergdeeqvktlsddddqgedasdd 261
                 + +egdrd     +++k   d +  g++++d+
  CCD25886.2  73 NENEGDRDPLT--KKLKIYKDTESIGDETNDE 102
                 55667776554..3455555655555554443 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 1.6e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXX CS
     BTV_NS2 272 yiekvakqiklkderfmslssampqasggf.drmivtkklkwqnvplyc 319
                 +i k   +  +   +f+sl s+m  a   +  rmi + klkw+n  ++ 
  CCD25886.2 296 FIGKFLLEYLMCSHKFISLKSSMLSAIAMYvARMITSPKLKWDNTCIHY 344
                 566666666677899******99998776538************98743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2908.65
//
Query:       CCD25887.2  [L=525]
Description: hypothetical protein NDAI_0G01110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-43  146.7   3.8      7e-41  138.9   0.2    3.3  3  Cyclin_N  Cyclin, N-terminal domain
    4.2e-31  107.5   0.4    1.3e-30  105.9   0.0    2.0  2  Cyclin_C  Cyclin, C-terminal domain
  ------ inclusion threshold ------
      0.015   14.7   0.1       0.04   13.3   0.1    1.7  1  DUF416    Protein of unknown function (DUF416)


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2      0.05     3e+02      12      56 ..      71     119 ..      57     136 .. 0.78
   2 !  138.9   0.2   1.2e-44     7e-41       1     127 []     266     391 ..     266     391 .. 0.98
   3 !    5.6   0.0    0.0021        12      75     122 ..     436     481 ..     428     482 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.05
                 HTS-STTCTTCTSSS-H.HHHHHHHHH...HHHHHHHTT--TTHHHHHH CS
    Cyclin_N  12 kflpkpdyldqqpelnp.emRailidw...lvevaekfkltpetlflav 56 
                 ++  ++++l++q++++  + ++++i+w   lv++ ++  ++++t +l++
  CCD25887.2  71 NSATRSSFLKTQKSFSRyKKKNNIINWkiiLVKINSVEIMSSKTSVLTA 119
                 3455566779999988889999999998888888887777777777765 PP

  == domain 2  score: 138.9 bits;  conditional E-value: 1.2e-44
                 HHHHHHHHHHCHTS-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS---HHHHH CS
    Cyclin_N   1 dilknlieqelkflpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeisppkledlv 99 
                 di+++l+e el +lp+++ + ++++++ e R+ilidwlv++++kf+l petlfla+n++dRfl+k+sv+ dklqlvg++cL++A+K+eei++p++++++
  CCD25887.2 266 DIFTYLHELELITLPNKQKILRHKNIR-ENRDILIDWLVKIHVKFQLLPETLFLAINLIDRFLTKESVQLDKLQLVGTSCLFIASKYEEIYCPSIKNFA 363
                 89******************9999955.89********************************************************************* PP

                 HHTTTSS-HHHHHHHHHHHHHHTTT--- CS
    Cyclin_N 100 yitdeafteeeilemErliLetLnfdls 127
                   td+a++ ++i++ E++iL++L+f+l+
  CCD25887.2 364 NETDGACSTDDIKKGEKYILKALDFNLN 391
                 **************************96 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.0021
                 HHHHHHHHHHHHHHSSS---HHHHHHHTTTSS-HHHHHHHHHHHHHHT CS
    Cyclin_N  75 lvgatcLllAaKveeisppkledlvyitdeafteeeilemErliLetL 122
                 l +a++++++ K+    +   ++l+++++  +++e+++++ +li+++L
  CCD25887.2 436 LCAAAAMFISRKMLGK-CQWDRNLIHYCG-GYRKEDLQKVCELIMDYL 481
                 889**********887.89999*****98.899*****9999999987 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.2      0.55   3.3e+03      74     107 ..      58      90 ..      53      94 .. 0.70
   2 !  105.9   0.0   2.2e-34   1.3e-30       1     116 [.     393     505 ..     393     508 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.55
                 --HHHHHHHHHHHHHHHHHHHGSS--HHCCCCTC CS
    Cyclin_C  74 yskedlkpcvelilellssapssklqavrrkyss 107
                 y++++++++++  +++  +++  k+q+ ++ y++
  CCD25887.2  58 YNQNNVRKIINNQNSAT-RSSFLKTQKSFSRYKK 90 
                 67777777777777777.6666677777777765 PP

  == domain 2  score: 105.9 bits;  conditional E-value: 2.2e-34
                 --HHHHHHHHHCCSSHT.-HCCHHCHHCHHHHHHCSCCHCCS-HHHHHHHHHHHCCHHHHS--S-HHHHHHC.---HHHHHHHHHHHHHHHHHHHGSS- CS
    Cyclin_C   1 ptplsFlrrflkaadasedselrtlakylleltlldydflsyppSliAaaalllarstlnspewtetlehyt.gyskedlkpcvelilellssapsskl 98 
                 p p++Flrr++ka+d+  d++ rtlak+lle+t++d +f++ +pSl Aaaa++++r++l++++w+++l hy+ gy kedl++++eli ++l   + + +
  CCD25887.2 393 PNPMNFLRRISKADDY--DIQSRTLAKFLLEITIIDCRFIGILPSLCAAAAMFISRKMLGKCQWDRNLIHYCgGYRKEDLQKVCELIMDYL--IEPTIH 487
                 89***********999..999**********************************************************************..567799 PP

                 -HHCCCCTCGGGCCCGGS CS
    Cyclin_C  99 qavrrkyssskfhkvstl 116
                 + + rky+s+kf k+s +
  CCD25887.2 488 EEFIRKYRSRKFLKASII 505
                 9************98876 PP

>> DUF416  Protein of unknown function (DUF416)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   6.6e-06      0.04      41     105 ..     212     276 ..     202     290 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 6.6e-06
                 HHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHH---GGG--STTHHHHHHHHHHHHHHHHHHH- CS
      DUF416  41 akvlrnildlvWelltvkkakinfeaqlekleeiiPdledfdfygvypAlDacvalsallqalae 105
                 +k+ r+i  ++We    kk+ki +++q+  leei +dl++ d  + +  ++ ++ + + l+ l+ 
  CCD25887.2 212 QKKKRHISGTIWEKDSPKKIKIGSKQQQIVLEEIWDDLDEEDLDDPLMVFEYVQDIFTYLHELEL 276
                 788899*************************************9998888888888888887744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1101  (0.0614089); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3849.97
//
Query:       CCD25888.2  [L=949]
Description: hypothetical protein NDAI_0G01120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-42  142.4   6.9    1.8e-22   79.6   0.3    3.4  2  GLEYA     GLEYA domain
    1.8e-28   99.2   0.2      2e-15   56.9   0.0    2.8  2  PA14      PA14 domain


Domain annotation for each model (and alignments):
>> GLEYA  GLEYA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.3     2e-26   1.8e-22       1      91 []     115     212 ..     115     212 .. 0.87
   2 !   64.0   1.5   1.4e-21   1.3e-17       1      91 []     416     514 ..     416     514 .. 0.85

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 2e-26
                 EEEEEEEEE--SSSEEEEEEE.EEESEEEEEESBT.TBBTTBHH.....S-SEEEET.....TSSSSEEEEEEEE-TT-BEEEEEEEEE-S-.EEEEEE CS
       GLEYA   1 falelrGYfyapktgtYtfslsnaDdiallwlGdk.Afscwtra.....nadleaty.....sgssesktvtvtltaGtyyPiRivyangggagslnfs 88 
                 f+ e +GYf++p+tgtYtfsls++Dd++ ++l ++ Af+c+              t      ++ +++++v++tlt+G+ yPi+ vy n++g+g++n s
  CCD25888.2 115 FVAEATGYFVPPTTGTYTFSLSSSDDVVGFFLDTDkAFNCCGDGtsvpvA----PTTlqlfqQTPTTTGSVKLTLTQGVPYPIKYVYLNRQGDGAFNPS 209
                 78899****************************999*******9544331....222344566668999999**************************9 PP

                 EEE CS
       GLEYA  89 vtd 91 
                 +td
  CCD25888.2 210 FTD 212
                 997 PP

  == domain 2  score: 64.0 bits;  conditional E-value: 1.4e-21
                 EEEEEEEEE--SSSEEEEEEE.EEESEEEEEESBT.TBBTTBHHS-SEEEET.......TSSSSEEEEEEEE-TT-BEEEEEEEEE-S-.EEEEEEEEE CS
       GLEYA   1 falelrGYfyapktgtYtfslsnaDdiallwlGdk.Afscwtranadleaty.......sgssesktvtvtltaGtyyPiRivyangggagslnfsvtd 91 
                 f+ el GYf++p++gtY+f  + aDd ++ ++ d+ +f+c+  a++++ +         +++++++++ v+l aG+ yPi i y n++g++ ln+ ++d
  CCD25888.2 416 FVAELYGYFVPPTSGTYSFVATGADDFVAYFFSDStSFTCCAGAQPSAFQASnllftetYTGAQTNSAIVNLIAGVPYPIGIRYLNRQGDATLNIAFID 514
                 7899**************************999999********6655444445577554446666666*************************99876 PP

>> PA14  PA14 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   2.2e-19     2e-15      35     140 ..     104     217 ..      63     226 .. 0.86
   2 !   39.2   0.0   6.1e-14   5.4e-10      36     133 ..     406     512 ..     374     524 .. 0.86

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 2.2e-19
                 CTTT-GCGCCSCEEEEEEEEEBSSSEEEEEEET.TCCCEEEEETTCCCEETT-TTS.........--TT----S-EEEEEEE-TT-EEEEEEEEEESSS CS
        PA14  35 evpgegeaadnfsarwtGylkppesGtYtFkva.sddgvrlsidgelvidnngqqe.........kksnadasteesatlyltaGkkYpirieyfhagt 123
                 +v g+ + a++f+a++tGy+ pp +GtYtF+++ sdd v +++d  ++++++g  +         + ++++ +t+ s +l+lt+G +Ypi+  y ++++
  CCD25888.2 104 TVYGKLILANAFVAEATGYFVPPTTGTYTFSLSsSDDVVGFFLDTDKAFNCCGDGTsvpvapttlQLFQQTPTTTGSVKLTLTQGVPYPIKYVYLNRQG 202
                 55666677899*********************9899999*************6666678999999889999999999********************** PP

                 SCCE..BEEEE-TTS-E CS
        PA14 124 dgsvhislswtspdgke 140
                 dg      s t p+g++
  CCD25888.2 203 DGAF--NPSFTDPAGTS 217
                 9987..77777777765 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 6.1e-14
                 TTT-GCGCCSCEEEEEEEEEBSSSEEEEEEET.TCCCEEEEETTCCCEETT-TTS..........--TT----S-EEEEEEE-TT-EEEEEEEEEESSS CS
        PA14  36 vpgegeaadnfsarwtGylkppesGtYtFkva.sddgvrlsidgelvidnngqqe..........kksnadasteesatlyltaGkkYpirieyfhagt 123
                 v g ++  +nf+a+  Gy+ pp sGtY F  + +dd v  +  +++ + +++ ++           +   ++ +++sa ++l+aG +Ypi i y ++++
  CCD25888.2 406 VYGTTVRRTNFVAELYGYFVPPTSGTYSFVATgADDFVAYFFSDSTSFTCCAGAQpsafqasnllFTETYTGAQTNSAIVNLIAGVPYPIGIRYLNRQG 504
                 66788899*********************666799999999**********444447999999996667788999************************ PP

                 SCCE..BEEE CS
        PA14 124 dgsvhislsw 133
                 d++    ++ 
  CCD25888.2 505 DATL--NIAF 512
                 *998..5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (949 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      219  (0.0122148); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.38
# Mc/sec: 7411.35
//
Query:       CCD25889.2  [L=304]
Description: hypothetical protein NDAI_0G01130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.048   13.6   2.8       0.33   10.9   0.1    2.4  2  TMEM154      TMEM154 protein family
       0.13   12.6   0.9       0.23   11.7   0.1    1.9  2  Orf78        Orf78 (ac78)
       0.21   11.9   3.9         10    6.4   1.1    2.2  2  PBP_dimer    Penicillin-binding Protein dimerisation domain
       0.39   10.5   7.1          1    9.2   7.1    1.9  1  ATP-synt_S1  Vacuolar ATP synthase subunit S1 (ATP6S1)


Domain annotation for each model (and alignments):
>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.7     0.036   1.6e+02      10      60 ..      24      75 ..      17      80 .. 0.49
   2 ?   10.9   0.1   7.3e-05      0.33      33      76 ..     229     280 ..     215     286 .. 0.63

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.036
     TMEM154 10 taletatleeesadatsaa..steseslkqeeakeslssaelsnesdqlelvl 60
                 + +t t+e+ s ++ s    ++es+s++ +e++++++  e+ n++ +l++ +
  CCD25889.2 24 ATASTFTTEHDSKNSVSFIswNSESSSVE-DESINEQNIEEFLNDKVSLQNPI 75
                44445555555554444430134444444.55555555566666655555533 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 7.3e-05
     TMEM154  33 eslkqeeake..slssaelsnesdqlel......vlmiiiPlvllillllvv 76 
                 e+lk ee k+  + s+ + ++++d+l+       ++ +i+ l lli+l++++
  CCD25889.2 229 EALKHEELKKkkNNSKEDGKDDDDKLSKiwteglIMCLIVSLLLLIILIMAI 280
                 5666444444004444455555555554899996666677777777887766 PP

>> Orf78  Orf78 (ac78)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.96   4.3e+03      43      43 ..      50      50 ..      17      86 .. 0.52
   2 ?   11.7   0.1   5.2e-05      0.23      36      85 ..     234     282 ..     202     284 .. 0.60

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.96
       Orf78 43 a 43
                +
  CCD25889.2 50 S 50
                1 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 5.2e-05
       Orf78  36 nkkekksaaeknditekesnaaekaqalnillisllavvcvlvllyviyY 85 
                 ++ +kk++++k+d + +++ + +k  ++ +++  +++++ +++l+++i++
  CCD25889.2 234 EELKKKKNNSKEDGKDDDD-KLSKIWTEGLIMCLIVSLLLLIILIMAISW 282
                 2222222333333333333.467777777777788888888888899975 PP

>> PBP_dimer  Penicillin-binding Protein dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0032        14      52      91 ..      53     136 ..      18     141 .. 0.75
   2 ?    6.4   1.1    0.0022        10      19      71 ..     190     242 ..     189     249 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0032
                 HTTS-HHHHHH............................................HHCCCCTSSTTSCECCCCCEECHHHCCCH CS
   PBP_dimer  52 eenldderlee............................................lalkknsykaykpvviaediseeevarik 91 
                 +e+++++++ee                                            + +++++ ++++p  i +dise++++r++
  CCD25889.2  53 DESINEQNIEEflndkvslqnpiviyqftnfhllqqllqpssssypfltnffesgNLQEMQTPSSFEPSMISDDISEKNLTRFN 136
                 3334444444477777777777777778889999999999999999999999999999********************999876 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0022
                 EEEEEEEEEEEESSS-HHHHHHHHHHHHHHCHHHTTS-HHHHHHHHCCCCTSS CS
   PBP_dimer  19 tnrpsytltitpsklkkkkalekikklaklleseenldderleelalkknsyk 71 
                 +n  ++++ ++  + ++++++ ki++la+l+++  + d e l+ + lkk++++
  CCD25889.2 190 SNDCKFNVFLNSLDYADNDEDLKINELAQLYHKRVSQDIEALKHEELKKKKNN 242
                 67778999999999999999999********5444444444444334443333 PP

>> ATP-synt_S1  Vacuolar ATP synthase subunit S1 (ATP6S1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   7.1   0.00023         1     100     128 ..     258     286 ..     157     289 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00023
  ATP-synt_S1 100 fsigiwmgLvvslillliltyglhmimdl 128
                   ++g +m L+vsl+ll+il+++++++ d+
   CCD25889.2 258 WTEGLIMCLIVSLLLLIILIMAISWVSDI 286
                  58999*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1499  (0.0836076); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2477.40
//
Query:       CCD25890.2  [L=76]
Description: hypothetical protein NDAI_0G01140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   40.8  16.2    1.9e-09   37.5  16.2    1.9  1  VMA21      VMA21-like domain
  ------ inclusion threshold ------
      0.046   14.0   1.2      0.052   13.8   1.2    1.1  1  DUF1430    Protein of unknown function (DUF1430)
       0.11   11.3   2.6       0.12   11.2   2.6    1.0  1  LptF_LptG  Lipopolysaccharide export system permease LptF/Lpt


Domain annotation for each model (and alignments):
>> VMA21  VMA21-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5  16.2   3.2e-13   1.9e-09       2      64 .]       9      61 ..       8      61 .. 0.94

  Alignments for each domain:
  == domain 1  score: 37.5 bits;  conditional E-value: 3.2e-13
       VMA21  2 vikkLllfsllmvtlPlasfftskhllfegvfglsnssatlysgvlAVivvnlvlasYiivAf 64
                v++kL++f+++m+tlPl++fft+++l  +         +tl+sg lA++++n+vl++++i Af
  CCD25890.2  9 VVRKLIFFTVAMITLPLVTFFTVQKLT-P---------NTLISGGLAAAMANVVLIAFVIAAF 61
                89*******************999876.3.........69**********************8 PP

>> DUF1430  Protein of unknown function (DUF1430)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.2   8.7e-06     0.052      41      91 ..      11      63 ..       8      72 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8.7e-06
     DUF1430 41 keyliiqlivllillvlifiltk..ekiillvvlvlllielllillvqekiek 91
                ++++++++++++++lv++f+++k   + ++   l++++ +++li +v +   +
  CCD25890.2 11 RKLIFFTVAMITLPLVTFFTVQKltPNTLISGGLAAAMANVVLIAFVIAAFTE 63
                689********************965666678899999999999998876655 PP

>> LptF_LptG  Lipopolysaccharide export system permease LptF/LptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.6     2e-05      0.12     305     352 ..      14      61 ..       2      63 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2e-05
   LptF_LptG 305 lliaillfvlyyvllslgkalaengvlppilaawlpnilflllglfll 352
                 +++++++++l +v++++ ++l+ n++++  laa ++n++++++ ++ +
  CCD25890.2  14 IFFTVAMITLPLVTFFTVQKLTPNTLISGGLAAAMANVVLIAFVIAAF 61 
                 7889999999*******************************9998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       961  (0.0536003); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.41
# Mc/sec: 559.60
//
Query:       CCD25891.2  [L=268]
Description: hypothetical protein NDAI_0G01150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-54  183.4   1.4    7.5e-54  183.2   1.4    1.0  1  Med18     Med18 protein


Domain annotation for each model (and alignments):
>> Med18  Med18 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.2   1.4   4.2e-58   7.5e-54       1     249 []       3     264 ..       3     264 .. 0.97

  Alignments for each domain:
  == domain 1  score: 183.2 bits;  conditional E-value: 4.2e-58
                 EEEEEEEEE-HHCHHHHHHHHHCCSEE..EEEEEEEEEEEEE.TT......SSSSS--CTTTSEEEEEEGTTSH......................TTS CS
       Med18   1 helsLvssvphanyeqllstLqgltgmlqpqeiatytlvtkp.nrvfkpkflpgkvnqieqlymklittlndeke........dyslkviekvkeddsd 90 
                 +++sL++++++++y+ ++st++ l+g+ +p  ++++  v+kp ++++++++  +k++ +e+ +++++++++ +++        +y +k+++++++d  +
  CCD25891.2   3 QQISLFGVIDEESYDLFISTITTLSGT-SPILFSRFSTVWKPlSQQYDIDNIDAKNQITEPNRITVSKSIPFNQFqfssssdaEYDYKILKSLSDDTIP 100
                 79*************************.9************955789*************************9889*********************** PP

                 STGCC................TS-EEEEEE----SS-SSS-EEEEEEEEEE.....ESS-HTHHHHHTTEEEEEEEEEEEEEEEE.TTEEEEEEEEE.E CS
       Med18  91 ieakklfseeekve.......erpwtLqisDiPeagknqkvlvrtiyestlv...erkdsllqfledlGysvineYivkGvrFfh.gdivielfkvfkr 178
                 ++++++ s   k++       + +w+L isDiP+ag n+kv+ +ti+es l    ++k sl + +++lGy++++ Y++ Gv+F+   +++ie+ k++ +
  CCD25891.2 101 MDPQEIISIIYKTNaqgssssSCSWSLAISDIPAAGANKKVSLQTINESVLLystGEKSSLSDTMNALGYNLDYNYVTIGVKFYLkHELIIEVQKIWTI 199
                 ********999999999**99******************************988899***************************999************ PP

                 ESSTTB...-TSTEEESSTT--EEEEEEEEES-TTSHHHHHHHHHHHHHHHHHHCTTS-EB.......--X CS
       Med18 179 ddekqeelpdkiklklldesntflikayinvnkstdiesinqgvkeLlklkeeLkglvkLeipDRmslDsR 249
                 ++++++      +++l+ ++n++likay++vn+stdi++in ++  Ll+l++eL+g+v+L ipDR+s+DsR
  CCD25891.2 200 NNNNDT------ANTLQVTKNGYLIKAYVDVNRSTDIDRINYTETLLLNLQRELQGYVDLVIPDRKSMDSR 264
                 999999......8*********************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2015.67
//
Query:       CCD25892.2  [L=546]
Description: hypothetical protein NDAI_0G01160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-83  279.7   0.2    2.7e-83  279.7   0.2    2.3  2  Pescadillo_N  Pescadillo N-terminus
    3.7e-11   43.3   0.0    1.6e-10   41.2   0.0    2.2  1  BRCT_2        BRCT domain, a BRCA1 C-terminus domain
  ------ inclusion threshold ------
      0.059   13.7   0.0       0.46   10.8   0.0    2.6  2  LIG3_BRCT     DNA ligase 3 BRCT domain


Domain annotation for each model (and alignments):
>> Pescadillo_N  Pescadillo N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.7   0.2   4.6e-87   2.7e-83      68     269 ..       1     202 [.       1     206 [. 0.98
   2 ?   -9.0  11.0         3   1.8e+04      47      89 ..     497     539 ..     469     546 .] 0.47

  Alignments for each domain:
  == domain 1  score: 279.7 bits;  conditional E-value: 4.6e-87
  Pescadillo_N  68 lhepilekfreikafakklkkalakkekekakrleknkpkykldhiikeRYPtfidAlrdldDaLsliflfatlpktkkikekliekcerlaeefqa 164
                   +hep+l+kfre+k+fakkl++al+++e+++ak+le+n+  ykldhiikeRYP+f dA+rd+dDaL+++flfa+lp+t++i+++++++++ +++++ a
    CCD25892.2   1 MHEPVLAKFREHKTFAKKLTRALGRGEVSSAKKLEENRSVYKLDHIIKERYPSFPDAIRDIDDALNMLFLFANLPATNQISARVTKDAQTICNQWLA 97 
                   6************************************************************************************************ PP

  Pescadillo_N 165 yviksrslrkvFlSiKGiYyqaeikgqkvtWlvPykfaqklekdvdfkvmltflefYetllkfvnfkLykslnlkyppkldeekdekaaelealsle 261
                   +v+k+r +rkvF+SiKG+Yyqa+++g++v+WlvPykf +++++d+df++mltflefY+tll+fv+fkLy++ +l yppkld++kd+  + l+++ le
    CCD25892.2  98 FVTKERLVRKVFVSIKGVYYQANVMGEDVRWLVPYKFPENIPSDIDFRIMLTFLEFYSTLLHFVLFKLYTDRGLVYPPKLDSNKDKIISGLSSYILE 194
                   ************************************************************************************************* PP

  Pescadillo_N 262 ekaskeel 269
                   ++ +k+++
    CCD25892.2 195 SRMEKNAI 202
                   99887765 PP

  == domain 2  score: -9.0 bits;  conditional E-value: 3
  Pescadillo_N  47 kankgstaaktyYyakdikfLlhepilekfreikafakklkka 89 
                   k+   s ++++ Y + +++  ++e+ +e+++++k   +k+k +
    CCD25892.2 497 KMIMMSNKQRKLYKKMQYSNKQKEDKIENLKKKKKQINKTKAK 539
                   3333333334444444444444444444444444333333333 PP

>> BRCT_2  BRCT domain, a BRCA1 C-terminus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   2.7e-14   1.6e-10       3      85 .]     286     377 ..     284     377 .. 0.77

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 2.7e-14
      BRCT_2   3 klFeglrFYindaepspsreklkklIeknGGevveti.............tsavyiviaesneee.......laekrkrrvvspkyIkdCikkgkllpl 81 
                 +lF+++ FYi     +  ++ l+ lI ++GG++ ++               s+v++        +       +++ ++r +++p++I+d+i+k++l+p 
  CCD25892.2 286 TLFSNFVFYI---GREVPIDILEFLILSCGGNIISEAaldqldnekndidLSKVTH--------QivdrpvlKNKIAGRTYIQPQWIFDSINKNELVPA 373
                 79********...67789***************77775666654433333222222........14556777899***********************9 PP

      BRCT_2  82 enyl 85 
                 + yl
  CCD25892.2 374 NLYL 377
                 9885 PP

>> LIG3_BRCT  DNA ligase 3 BRCT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.86   5.1e+03      57      72 ..      81      96 ..      75     103 .. 0.79
   2 ?   10.8   0.0   7.7e-05      0.46      29      80 ..     310     369 ..     284     370 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.86
   LIG3_BRCT 57 ekeksknakaVtaewi 72
                +++  k+a+ ++ +w+
  CCD25892.2 81 SARVTKDAQTICNQWL 96
                56678999*******8 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 7.7e-05
   LIG3_BRCT  29 AydGdlvkeekeke............aTHvvvskkeeskkekeksknakaVtaewiwesIkkrt 80 
                   +G++++e+ +++            +TH +v+ +      k+k  + + + ++wi +sI+k++
  CCD25892.2 310 SCGGNIISEAALDQldnekndidlskVTHQIVDRP----VLKNKIAGRTYIQPQWIFDSINKNE 369
                 55666666666655666666666666*******77....67888889999**********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3198  (0.17837); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.32s 00:00:01.25 Elapsed: 00:00:00.47
# Mc/sec: 3513.39
//
Query:       CCD25893.2  [L=187]
Description: hypothetical protein NDAI_0G01170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       618  (0.0344693); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1460.51
//
Query:       CCD25894.2  [L=362]
Description: hypothetical protein NDAI_0G01180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-31  109.4  17.7    2.8e-31  108.6  17.7    1.4  1  Rhomboid     Rhomboid family
  ------ inclusion threshold ------
       0.83    8.4   4.0        1.1    8.1   4.0    1.1  1  Adeno_hexon  Hexon, adenovirus major coat protein, N-terminal


Domain annotation for each model (and alignments):
>> Rhomboid  Rhomboid family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.6  17.7   3.1e-35   2.8e-31       7     147 ..     189     337 ..     184     340 .. 0.96

  Alignments for each domain:
  == domain 1  score: 108.6 bits;  conditional E-value: 3.1e-35
                 TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S.........-EESSHHHHHHHHHHHHHHHHCCCCGS-- CS
    Rhomboid   7 lwrlltsmflHagwlHllfNmlallvfGsplerrlGslrflllyllsglagsllsllfsaeses......plvGaSGaifgllgallvlvprnrkllrk 99 
                  w ++ s+f+H +++Hl++Nmlal++fG++l ++lG + f+ ly+ s+++gsl+sl++ + ++       p++GaSGa+fg+lg++++l+p++++ll++
  CCD25894.2 189 NWSIIGSAFSHQEFWHLGMNMLALWSFGTTLSTVLGASGFFSLYMNSAIMGSLFSLWYPRIARMgllvmgPSLGASGALFGVLGCFSYLFPTSKILLFV 287
                 599*******************************************************99987799********************************* PP

                 --HC......CCCCCCCCCCHHHCTSSSTTTHHHHHHHHHHHHHHHHHHCC CS
    Rhomboid 100 liia...llllllfillnlvlgllpraggvsnlAHlgGllaGlllgllllr 147
                 ++++   ++++l+ +++n + ++l++ g+++++AHlgG l+G+++g+++  
  CCD25894.2 288 FPVPggaWVAFLASVVWNGAGCVLKW-GSFDYAAHLGGSLIGVAYGWYIKT 337
                 ***9**********************.5*******************9865 PP

>> Adeno_hexon  Hexon, adenovirus major coat protein, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.0   0.00012       1.1     408     491 ..      97     181 ..      63     183 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00012
                  TS-..-TTSHHH.HTTEE--GGGT-SSSSTTS----GGGTTS-STTSS--HHHHHHTTSS-SSS-----EEE----TTTTT---- CS
  Adeno_hexon 408 vnvpddtssyny.inrrvplvnvidlftniGarysldvmdnvnpfnhhrnsGlkyrsqllGngryarfhiqvpqkffaiknllll 491
                   n  +d +syn   ++r+ ++ +i l + +G  ++  ++ ++ pfnh + +       llG   ++    q+p+ +  +++ +ll
   CCD25894.2  97 YNRNNDHNSYNNnEDNRIRNITLIGLGSMVGIYFTTPYLFQLPPFNHFKRNPKHLVYTLLGLNLFVFTLWQIPRNWHFLQKYMLL 181
                  4556799999862578*********************************999999999***999999999****99988888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2424.81
//
Query:       CCD25895.2  [L=961]
Description: hypothetical protein NDAI_0G01190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-49  168.1   0.3    2.1e-49  168.1   0.3    2.2  2  RabGAP-TBC      Rab-GTPase-TBC domain
    4.4e-16   58.8   0.1    1.4e-15   57.1   0.1    1.9  1  GRAM            GRAM domain
    3.3e-05   23.5   0.9      0.012   15.4   0.1    3.2  2  EF-hand_6       EF-hand domain
    0.00043   20.7   1.1       0.38   11.2   0.2    3.1  2  EF-hand_7       EF-hand domain pair
  ------ inclusion threshold ------
      0.058   13.5   0.5       0.26   11.4   0.0    2.4  2  DUF5595         Domain of unknown function (DUF5595)
      0.059   13.6   0.1       0.22   11.8   0.1    2.0  1  Vps36_ESCRT-II  Vacuolar protein sorting protein 36 Vps36
      0.066   12.8   0.3       0.26   10.9   0.1    2.2  2  EF-hand_1       EF hand
      0.077   13.2   0.0       0.28   11.4   0.0    1.9  1  Gam             Host-nuclease inhibitor protein Gam
       0.11   12.9   0.0       0.92    9.9   0.0    2.3  2  PH_TFIIH        TFIIH p62 subunit, N-terminal domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1   0.3   1.1e-52   2.1e-49       2     215 .]     249     453 ..     248     453 .. 0.91
   2 ?   -2.1   0.2       1.3   2.5e+03      36      77 ..     511     552 ..     488     562 .. 0.66

  Alignments for each domain:
  == domain 1  score: 168.1 bits;  conditional E-value: 1.1e-52
  RabGAP-TBC   2 elRgevWklllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriLkaysiynpevgYcqGmndivapl 100
                 +lRge+W++ +g+        +    +  + ++    +  ++s+    I+kD++r++pe +  +++ g + L+++L ays+ np+vgYcq mn + a l
  CCD25895.2 249 RLRGEIWEISSGSI-------YLRFANPGFYEKLLIDNAGKSSQAVDEIEKDLKRSLPEYSAYQTELGIKRLRNVLTAYSWKNPDVGYCQAMNIVTAGL 340
                 7999****999994.......333334444444555555566667*************88999********************************9999 PP

  RabGAP-TBC 101 llvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlelfaikwfltlflrefpletvlrlwD.lllegekfv 198
                 l ++++ee+aFwc+++L+ + +++ +y++++ g+  +++v+e  +++k+p +++++ +++++l++ +++wfl lf +++ple+++r++D ++l+g k+ 
  CCD25895.2 341 L-IYMSEEQAFWCLSNLC-DIYIPGYYSKTMYGTLLDQRVFEAFVEDKMPVFWDYIVKHDIQLSIVSLPWFLSLFFTSMPLEYAVRIMDiFFLNGAKT- 436
                 9.8889999*********.9*********************************************************************9999***99. PP

  RabGAP-TBC 199 llrvalailklleeell 215
                 l++vala+lk ++e++l
  CCD25895.2 437 LFQVALAVLKINSEDIL 453
                 *************9997 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 1.3
  RabGAP-TBC  36 sklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriL 77 
                  +++ ++e+ +++ I++ v+rt   +   + + ++++L++i 
  CCD25895.2 511 YQERRKHEKGIMQNIETFVKRTQLRHMPRTFHLTEENLSNIY 552
                 344444445557777777777776556666667777777764 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.1   7.2e-19   1.4e-15       1     107 [.      27     154 ..      27     160 .. 0.93

  Alignments for each domain:
  == domain 1  score: 57.1 bits;  conditional E-value: 7.2e-19
                 HHHHHHS----TT--EEEEEEEEEESS..........................SEEEEEEEEESSEEEEEE-STT---EEEEEGGGEEEEEE....-TT CS
        GRAM   1 elfrkkfkellpeEkllatykCyllrdg.........................gpvqGrlyltnyrlcFrskplgsskkvvlpladikriekstsaanl 74 
                 e+f+ ++k l+p+E +++++++ l+  +                         ++ +G++yltn+++ F++ +++s+ ++vl+++++kr+e+s+s+++ 
  CCD25895.2  27 EKFKLEYK-LPPGEAIIDDINADLS--FipaknapstdknfwekntpqepataIIFSGKIYLTNHFILFKDIFDQSCSTLVLNISTVKRVERSPSESYS 122
                 5899999*.*********9999998..4457899*************************************99888877******************** PP

                 -TT-EEEEESS-..EEEEE--TTHHHHHHHHHH CS
        GRAM  75 lengiqvetsskdlelaFagfvtrdeaiefiee 107
                 ++ +i+++++s+   ++F+g ++r e++++ ++
  CCD25895.2 123 STLLITLYSGSQL-LVQFIGLKYRAEQFCDALK 154
                 ************6.**************98665 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.013        26       2      23 ..     608     629 ..     607     636 .. 0.89
   2 !   15.4   0.1   6.2e-06     0.012       2      25 ..     644     667 ..     643     669 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.013
   EF-hand_6   2 lreaFklfDkdgdGkidaeElr 23 
                 lr++F+ +D+ + G+++ ++++
  CCD25895.2 608 LRKLFNNWDTAKIGELTLNDVV 629
                 89****************9986 PP

  == domain 2  score: 15.4 bits;  conditional E-value: 6.2e-06
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrka 25 
                 ++++F l+D d dG++++e++ ++
  CCD25895.2 644 VNYFFSLYDEDQDGELHREDVLQM 667
                 579*****************9886 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0055        11      35      66 ..     578     628 ..     539     631 .. 0.64
   2 !   11.2   0.2   0.00019      0.38       5      36 ..     645     687 ..     641     712 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0055
   EF-hand_7  35 a................gegsklsdee...lellfkefDtdkdGvisfdEF 66 
                 +                + +  +++++   l++lf+++Dt k G++++++ 
  CCD25895.2 578 FvqflskicdwckpcenDSDPAFREQKsnfLRKLFNNWDTAKIGELTLNDV 628
                 05555555666666555455555565577799****************985 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00019
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqga...........g 36 
                  + F ++D d+dg l +e++l++ + +   +            
  CCD25895.2 645 NYFFSLYDEDQDGELHREDVLQMSEGLLLLTepwksgrfvdlL 687
                 567999*************776665443333555555555543 PP

>> DUF5595  Domain of unknown function (DUF5595)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013      0.26       2      25 ..     156     179 ..     155     183 .. 0.91
   2 ?   -2.5   0.1       2.8   5.5e+03      35      61 ..     492     518 ..     489     530 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00013
     DUF5595   2 eeedgievnkLFldYtvkcYekFm 25 
                 + +d+i + kL++d++ +cY++F+
  CCD25895.2 156 NLKDNIPNAKLLVDFLQTCYSEFL 179
                 6789*******************7 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.8
     DUF5595  35 daeleskLkelynvdeaqlesleeeek 61 
                  + l + +ke++ + e+ + +  ++++
  CCD25895.2 492 QELLVTAFKEFNVITETMIYQERRKHE 518
                 566778899999999998876655553 PP

>> Vps36_ESCRT-II  Vacuolar protein sorting protein 36 Vps36
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00011      0.22      37      76 ..      80     118 ..      75     130 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00011
  Vps36_ESCRT-II  37 nGrlyLTthriiyvdsadpkkeslslelklvesvsekels 76 
                     +G++yLT+h i++ d  d +  +l l++++v++v+ ++ s
      CCD25895.2  80 SGKIYLTNHFILFKDIFDQSCSTLVLNISTVKRVE-RSPS 118
                     7*****************99999*********994.3222 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       6.8   1.3e+04       2      22 ..     608     628 ..     608     632 .. 0.74
   2 ?   10.9   0.1   0.00013      0.26       3      25 ..     645     667 ..     643     671 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 6.8
                 HHHHHHHHTTTSSSEEEHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEf 22 
                 l+++F+  D+ + G +++++ 
  CCD25895.2 608 LRKLFNNWDTAKIGELTLNDV 628
                 678999999877777777765 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00013
                 HHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkel 25 
                 + +F+++D D+dG + +e+ +++
  CCD25895.2 645 NYFFSLYDEDQDGELHREDVLQM 667
                 678***************99987 PP

>> Gam  Host-nuclease inhibitor protein Gam
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014      0.28      36      90 ..     822     876 ..     812     883 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00014
                 HTTS-HHHHHHHHHHHCGGGT--HHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHH CS
         Gam  36 ekglpqhlfeslcidnlqrhgaskkaisrafdddvefqermaehirymvetiarh 90 
                 e  + q l  s+ +d+    ga +ka+   fd  +    r+ae++r  v+++a  
  CCD25895.2 822 ELFFAQTLRSSIHVDQCIESGANNKALRGMFDGIIADGRRVAEQVRRRVDSVATR 876
                 556789999*****************************************99975 PP

>> PH_TFIIH  TFIIH p62 subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00046      0.92       6      86 ..      80     157 ..      79     158 .. 0.89
   2 ?   -0.3   0.0       0.7   1.4e+03      30      49 ..     553     573 ..     539     581 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00046
    PH_TFIIH   6 dGtLtltekrleWtpdasssapsvsiplseIknlqispagsaKvmLklvlkedkseeesytFtFtn.gsearkerdavkdlL 86 
                 +G ++lt++ +++++  ++s +++++++s++k    sp  s    L ++l      +++++ +F   + +a + +da k+ L
  CCD25895.2  80 SGKIYLTNHFILFKDIFDQSCSTLVLNISTVKRVERSPSESYSSTLLITLY----SGSQLLVQFIGlKYRAEQFCDALKKNL 157
                 599************55556789****************************....899******996666999999998877 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.7
    PH_TFIIH  30 siplseIknlqispag.saKv 49 
                 +i +++I++++is+ + s+ +
  CCD25895.2 553 DIYYDRIETHKISKGTgSSNM 573
                 6899*********98735555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.74u 0.29s 00:00:01.03 Elapsed: 00:00:00.44
# Mc/sec: 6523.60
//
Query:       CCD25896.2  [L=706]
Description: hypothetical protein NDAI_0G01200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-24   86.3   0.4    5.2e-24   84.8   0.4    1.8  1  Telomere_reg-2  Telomere length regulation protein


Domain annotation for each model (and alignments):
>> Telomere_reg-2  Telomere length regulation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.4   2.9e-28   5.2e-24       2     109 .]     448     560 ..     447     560 .. 0.97

  Alignments for each domain:
  == domain 1  score: 84.8 bits;  conditional E-value: 2.9e-28
  Telomere_reg-2   2 vYlkdllelLr...dkddyekieaaLksaeeLirrkad...eveenaveLataLltledkfdienfeelrlnalvallvatpekvaeylteeffs 90 
                     v++kdl++ L+   ++++++++   Lk   +L+r+k++   eve ++  L++++  ++++fd+++fe +r nalv+llv+ pekv+  l++ f++
      CCD25896.2 448 VFIKDLVKELEmldNNNHRNSFIPLLKKSIKLVRQKRHfplEVEYYCTALLSSITLMNNNFDESQFEGWRVNALVSLLVVVPEKVT-ELYKLFLN 541
                     9**********995558889******************************************************************.9******* PP

  Telomere_reg-2  91 nqyslqqRidiLsvlalaA 109
                     +++slqqR+++L++l+laA
      CCD25896.2 542 SELSLQQRMSVLTSLGLAA 560
                     *****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.25s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 4832.65
//
Query:       CCD25897.2  [L=1648]
Description: hypothetical protein NDAI_0G01210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.2e-132  441.9   0.6   2.2e-132  441.9   0.6    2.8  3  Peptidase_C50  Peptidase family C50
  ------ inclusion threshold ------
      0.014   14.8   0.0      0.037   13.4   0.0    1.7  1  CHAT           CHAT domain
      0.033   14.3   1.1        7.9    6.7   0.1    4.0  3  HBD            Helical bundle domain
      0.088   13.2   0.2       0.87   10.0   0.2    2.8  1  DUF2833        Protein of unknown function (DUF2833)


Domain annotation for each model (and alignments):
>> Peptidase_C50  Peptidase family C50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1         1   4.7e+03     133     157 ..     351     389 ..     324     432 .. 0.44
   2 ?   -1.1   0.1      0.18     8e+02     102     182 ..     624     714 ..     606     748 .. 0.64
   3 !  441.9   0.6  4.9e-136  2.2e-132       3     395 .]    1193    1589 ..    1191    1589 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1
                    S..........CHCCCCHTBTHHHHHHHHTCHTT....T CS
  Peptidase_C50 133 k..........kkekkklelddrllelflglgda....e 157
                                 +++++e ++r+l++f +l +a     
     CCD25897.2 351 AwlttmnsiwkLVKNENFEKNKRILTIFDKLLNAlnsnI 389
                    233333344443334444444444444444333333331 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.18
                    GS-E---HHHHHHHHHHHHHHHHHHSCHHHHS...............CHCCCCHTBTHHHHHHHHTCHTTTTTHHHHHHHHHHHHHHHHHHTT... CS
  Peptidase_C50 102 lsqeerekellekfqkkfekilkkhlpsrkqk...............kkekkklelddrllelflglgdaeedldeeledllyfvvdilqfhgern 182
                    lsq +++k+ +++f+ +f k+l ++l+ ++                    +  ++++++lle  ++l+     +++ ++dl + +v+++q+  ++ 
     CCD25897.2 624 LSQYKERKDDISSFEVNFVKTLFQYLNFNNFHlliielasaiknipeYYPSLIMQTEKWLLESYIDLQ-----FNNRIMDLTNNLVQLVQLDLQNA 714
                    55666666666666666666666666554444566655555444444333444555555566666655.....66777777777777777665554 PP

  == domain 3  score: 441.9 bits;  conditional E-value: 4.9e-136
                     SSEEEEEEEETTST.EEEEEEECCCCCC...HH....HHHHHHHHHHHHHHHHHHHHC.H.CCHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_C50    3 kkdLllsrleagss.plvlrlplerassrdadeevlsfeevkeelkeiieesnestks.a.kdvktkeakkeWWkeReeLDkrLkeLleniekv 93  
                     +++Llls+++  ++   +l +pl+r + rd d+  lsf++++ el++iieesn+st+  + + +ktke++keWW+ R+eLD rL++Ll+nie +
     CCD25897.2 1193 TGNLLLSKIDPVTKkLNHLSIPLNRGNARDLDTLYLSFKDASMELQNIIEESNRSTSFeVtNLIKTKEQRKEWWDLRHELDGRLQTLLQNIEYS 1286
                     6789******98884669***************************************987799******************************* PP

                     TTGGGGGGGS-E---HHHHHHHHHHHHHHHHHHSCHHHHSCHCCCCHTBTHHHHHHHHTCHTTTTTHHHHHHHHHHHHHHHHHHTT....GGGS CS
  Peptidase_C50   94 wLggfkgilsqeerekellekfqkkfekilkkhlpsrkqkkkekkklelddrllelflglgdaeedldeeledllyfvvdilqfhgernaydei 187 
                     w++gfkgi+ +++++++++++f++kf +il+++lpsrkq  +    l+++d++l+++l+l++ ++++ +++edl+y+++dil fhge+naydei
     CCD25897.2 1287 WFNGFKGIFDTTKINESAFKDFKEKFYEILHQNLPSRKQLGNPYMFLQIEDWILQAMLKLDPLDKQFLSQMEDLIYCILDILLFHGEENAYDEI 1380
                     *************************************************************99******************************* PP

                     .HHHHHHHHHHHHHHHHCCHHHCE....SEEEEEE-TTCTTS-GGGSTTTTTS-EEEES-HHHHHHHHHHHCTTGCSEEEESTSTEEEEE-TTS CS
  Peptidase_C50  188 dfdslvvellealkeyeeaakeekkkekehtiLvldkelqalPWEslpiLrgqsvsRvpSleslrellekskekeegekvsksskgtyiLnPsg 281 
                     df+ l+++l+e++++y+++  ++ ++e +ht+L+++++++++PWEsl+++++ s++RvpSl+ l ++l+k ++ +    + +++++++iLnP g
     CCD25897.2 1381 DFSLLHIQLEEQIRRYQSKSLHT-SNEIDHTFLIVSNSCHSFPWESLSFMKDLSITRVPSLQWLSSTLQKWNK-DLFGGILVNERISMILNPYG 1472
                     *****************866665.568*****************************************99885.44455666668********* PP

                     -SHHHHHHHHHHHHHHCC...T-EEEESS---HHHHHHHHHHSSEEEEESSTTSTTTS-HHHHTT.S--SEEEEESTTTT--ECTTTCECCSHH CS
  Peptidase_C50  282 DLksTqetfeewleklek...gwkgivgraPteeeleeaLkssdlflYfGHGsGaqYirsreirklercaatlLmGCSSgalkeaGefepsGtv 372 
                     DL++T+e+f+e ++++++   + k +++++P+e+++ ++L++s+lf+Y+GHG+G+qYir+rei+k +++a+++L+GCSS+++k+ G++ep+Gtv
     CCD25897.2 1473 DLNRTEERFRELFKNIATnrpSSKLLINEKPDENQFLDMLSNSNLFIYVGHGGGEQYIRAREIKKQDNVAPAFLLGCSSASMKYFGKLEPTGTV 1566
                     ***************9888889************************************************************************ PP

                     HHHHHTT-SEEEEESS--BHHHH CS
  Peptidase_C50  373 lnYllagcpavvanLWDVTDkDI 395 
                      +Yll+g+p+vv+nLWDVTDkDI
     CCD25897.2 1567 HSYLLGGSPMVVGNLWDVTDKDI 1589
                     **********************9 PP

>> CHAT  CHAT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   8.3e-06     0.037     160     248 ..    1513    1599 ..    1479    1623 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 8.3e-06
                  xxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CHAT  160 lqsglvlsaense.........edglLtaeeilelnldgaelVvLsACqtglgevidgegvlgLaralllaGarsviaslwpVddeatalLmkrfyq 247 
                  ++s         +          ++ ++a+ei + + + +  ++L  C +++ +  ++ +  g +++ ll G++ v+++lw V d+   ++ +++++
  CCD25897.2 1513 SNS---------NlfiyvghggGEQYIRAREIKK-QDN-VAPAFLLGCSSASMKYFGKLEPTGTVHSYLLGGSPMVVGNLWDVTDKDIDKFSQEVFE 1598
                  334.........14444444448899999***99.888.99**********66555********************************999999988 PP

                  x RF
        CHAT  248 n 248 
                  +
  CCD25897.2 1599 K 1599
                  6 PP

>> HBD  Helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1    0.0018       7.9       4      40 ..     612     650 ..     610     656 .. 0.81
   2 ?   -0.8   0.0      0.38   1.7e+03      61      77 ..     732     748 ..     730     751 .. 0.89
   3 ?    2.8   0.0     0.029   1.3e+02      19      37 ..     811     830 ..     803     838 .. 0.76

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0018
                 HHHHHHHHHHHH..TSSSSS-SHHHHHHHHHHHHHHHHH CS
         HBD   4 rylleeYleeLe..kvkqkddklkstRlsvvkrlaeYLn 40 
                 r+ +++++  Le  ++k+++d + s  +  vk l++YLn
  CCD25897.2 612 RSFIDKWILRLElsQYKERKDDISSFEVNFVKTLFQYLN 650
                 67788888765511667779******************7 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.38
                 HTT---HHHHHHHHHHS CS
         HBD  61 remqPaefEeeyLekls 77 
                 +e +P +fE++++++l 
  CCD25897.2 732 WENNPTAFERLFIKELP 748
                 899**********9985 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.029
                 SSS-S.HHHHHHHHHHHHHH CS
         HBD  19 qkddk.lkstRlsvvkrlae 37 
                 +k+dk  +s+Rls++k+l  
  CCD25897.2 811 KKSDKlSQSSRLSLIKSLST 830
                 356663689********975 PP

>> DUF2833  Protein of unknown function (DUF2833)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.2   0.00019      0.87      20      67 ..     349     397 ..     339     408 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00019
     DUF2833  20 dqvWfvtsdvvqkltkkekrefrklileyrdllldq.yetlwnyvwvgn 67 
                 +  W  t + ++kl k+e  e  k+il   d+ll+   + +  y   +n
  CCD25897.2 349 NSAWLTTMNSIWKLVKNENFEKNKRILTIFDKLLNAlNSNIIAYKNCEN 397
                 789*******************************996667777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1648 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1192  (0.0664845); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.29s 00:00:01.25 Elapsed: 00:00:00.46
# Mc/sec: 10672.01
//
Query:       CCD25898.2  [L=225]
Description: hypothetical protein NDAI_0G01220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.7e-31  107.2   0.0    1.2e-30  106.6   0.0    1.3  1  Flavin_Reduct  Flavin reductase like domain


Domain annotation for each model (and alignments):
>> Flavin_Reduct  Flavin reductase like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0     7e-35   1.2e-30       1     153 [.      23     219 ..      23     221 .. 0.81

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 7e-35
                    HTTS-EE-EEEEE.EE....TTEEEEEEESSEEEEETTT.TEEEEEEETTSHHHHHHHHHSEEEEEEEBC.CGHH.HHHHTCS............. CS
  Flavin_Reduct   1 mrrvaqpvavvttsvp....ptsplgatlssftslsldP.plvafslrlpsstadalkeagefvinllse.sqea.ladafsqksg.......... 79 
                    m+r+ + v+++t++vp    ++s +g+t+ss+tslsl+P p ++f+l+ ps+t+dal+  + f+i++l++ + +  la++fs++s           
     CCD25898.2  23 MSRISHSVMIITSAVPdtetSSSYHGLTISSMTSLSLNPyPRIQFNLQIPSFTSDALHLYKYFAIHVLKPnEYSInLAKQFSKGSSirhsngfert 118
                    899*************6655555569********************************************555557*******8884444444444 PP

                    ...SCCCCCCCCCCCEEECT..................CCCSEEETTCSEEEEEEEEEEECCTTEEEEEEEEEEE...EESTTECTT......... CS
  Flavin_Reduct  80 ...prtddksifagltwees..................ptgapallgalasleCqvvgsvelgdhelfigeVvav...kvgddadee......... 142
                                       +                  + + p+l g+   l C+  + +e+gdhe++ig+V+++   +v++da++          
     CCD25898.2 119 rpfV---------------GlkehvdfekyplindkseKLNIPILSGCERILICKNDHVFEVGDHEIWIGKVEDIlddSVKTDAKNHnnteqdtkn 199
                    4440...............34334445555555445456777*********************************77755555443378999999* PP

                    .........BEECCCCCEEE CS
  Flavin_Reduct 143 .........pLlywrrryag 153
                              Lly++rr++ 
     CCD25898.2 200 htkddgtegSLLYYNRRFHI 219
                    ***9999988********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1722.00
//
Query:       CCD25899.2  [L=1209]
Description: hypothetical protein NDAI_0G01230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3857  (0.215126); expected 358.6 (0.02)
Passed bias filter:                      519  (0.0289475); expected 358.6 (0.02)
Passed Vit filter:                       103  (0.00574488); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.42u 0.34s 00:00:01.76 Elapsed: 00:00:00.55
# Mc/sec: 6561.47
//
Query:       CCD25900.2  [L=327]
Description: hypothetical protein NDAI_0G01240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-58  193.8   2.4    7.1e-20   70.7   0.1    3.1  3  Mito_carr        Mitochondrial carrier protein
  ------ inclusion threshold ------
      0.021   14.0   0.6       0.17   11.0   0.2    2.2  2  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.1     8e-24   7.1e-20       5      94 ..      23     122 ..      19     125 .. 0.89
   2 !   63.1   0.0   1.9e-21   1.7e-17       6      91 ..     131     212 ..     126     218 .. 0.92
   3 !   58.9   0.0   3.8e-20   3.4e-16      11      95 ..     226     324 ..     219     326 .. 0.83

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 8e-24
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS..........HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa..........ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrll 93 
                 v ++l+aG+l+g++a +v++Pld++K+rlq+ + ++++++ ++           l ++k+++++eG+r++++G++p   +++++ +++f++y  + ++l
  CCD25900.2  23 VSNSLIAGSLSGLIARSVIAPLDTLKIRLQIVPLEQQQKQASKitsvaryqsrSLMMIKQMIQKEGIRSFWKGNVPGSAMYIVYGGVQFGSYSLYNNIL 121
                 6789***************************77777776666677788999997779***********************************9999887 PP

                 C CS
   Mito_carr  94 l 94 
                  
  CCD25900.2 122 G 122
                 5 PP

  == domain 2  score: 63.1 bits;  conditional E-value: 1.9e-21
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   6 lkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                 l+ l++G+lag+ ++++ +P+dv++tr+ ++++ ++++    i   +++i+ +eG+ g++rG++ +++ ++ ++++ f++yetlk 
  CCD25900.2 131 LNGLFIGALAGMSSSFCSYPFDVLRTRFVANRTLQSSN----INLKIQEIWTHEGVQGFFRGCSWSMFTISLSASILFGCYETLKV 212
                 56799****************************99885....777899***********************************996 PP

  == domain 3  score: 58.9 bits;  conditional E-value: 3.8e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHH..............CCCSSTTTSCSS..........HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHH CS
   Mito_carr  11 aGglagavatlvttPldvvKtrlqt..............qkksskksksaa..........ildvlkkiykeeGlrglyrGllpnllrvapasalkfvl 85 
                 a++++g+++++v++Pld+++ r+q+                                    ++++   i+++eGl++lyrG++++l +++p++ + +++
  CCD25900.2 226 ASSISGVLSKVVVFPLDTIRRRIQLrsaaslqdvvnsehM----------VetykkyhgmgFIQMGNYILRQEGLASLYRGVTMALCKSVPSTIVSLWS 314
                 7899*********************666666666654332..........04444445577************************************** PP

                 HHHHHHHHCT CS
   Mito_carr  86 yetlkrlllk 95 
                 ye + rll  
  CCD25900.2 315 YEAVLRLLPS 324
                 ******9975 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.023   2.1e+02     174     197 ..      24      47 ..      19      88 .. 0.81
   2 ?   11.0   0.2   1.9e-05      0.17     144     210 ..     102     167 ..      63     178 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.023
  Serine_protease 174 ynkllaGalsGviAtvlttifnsy 197
                       n l+aG lsG+iA  +  ++ ++
       CCD25900.2  24 SNSLIAGSLSGLIARSVIAPLDTL 47 
                      58899********98877776655 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 1.9e-05
  Serine_protease 144 srslaGfvnFaalgvvedeiakflkindelynkllaGalsGviAtvlttifnsykDkkllaskveng 210
                         + G v F +  + ++ + +++  n +  n l  Gal+G+  ++++++f  ++ + +++ +++  
       CCD25900.2 102 MYIVYGGVQFGSYSLYNNILGSKMSWNAQ-LNGLFIGALAGMSSSFCSYPFDVLRTRFVANRTLQSS 167
                      55567889999999999999999999876.578889****************999888887777554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      502  (0.0279993); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2400.78
//
Query:       CCD25901.2  [L=225]
Description: hypothetical protein NDAI_0G01250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-17   63.9   0.0    4.3e-17   62.9   0.0    1.5  1  RNase_PH    3' exoribonuclease family, domain 1
    5.5e-06   26.3   0.4    1.1e-05   25.3   0.4    1.6  1  RNase_PH_C  3' exoribonuclease family, domain 2


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   4.8e-21   4.3e-17       5     131 ..       3     125 ..       2     126 .. 0.88

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 4.8e-21
                 EEEEESSSSTTSEEEEEEECCEEEEEEEEEEEEEE-TCCG--CCEEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-CCGCCTCEEEEE CS
    RNase_PH   5 lsietgvlsqanGSaylelGdtkvlasvtgpieerpseerddaegaldveveyapfasgerrregrpsdeeielsrlleralrpsillekkpkstidid 103
                 +++etg+l+q +GS+ +++ +tk+ +svtgpie+++++e +  + al+++v+  p       + g+p+ +e++++++l   + p+i    +p+   +i+
  CCD25901.2   3 FQAETGILTQVDGSSQIQSQKTKIFCSVTGPIEPKARQELP-TQLALEIIVR--P-------SLGVPNTREKLIEDKLRAVFTPLITRYLYPRQLCQIT 91 
                 689******************************97666653.2333444444..4.......3399********************************* PP

                 EEEEECCC......S-CHHHCHHHHHHHHHCTCE CS
    RNase_PH 104 itvlssdg......gslldalinaaslALadagi 131
                 +++lss        +   + +ina+ lAL+dagi
  CCD25901.2  92 LQILSSGEseqeftQREVANSINATLLALIDAGI 125
                 ******88999999999****************9 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.4   1.3e-09   1.1e-05       2      65 ..     130     198 ..     129     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.3e-09
                 --EEEEEEEE.TTEEEES--HHHHHHSSEEEEEEE......ETTSEEEEEEEECSSC.EEHHHHHHHHHHHH CS
  RNase_PH_C   2 pviavtvgkv.ddqfvlDptkeEedlsegdltlav......agtkevvtlmkeggsq.ldeetlleaielAk 65 
                 + +a++ ++  dd+++ Dp+ e+ + +++++ la+      +    v++++ +++ + ++e++l++ +e ++
  CCD25901.2 130 MCAAISLAISsDDKLIMDPNDEQLKAAKSVHVLALelvessT---VVKNVLLLDSYGdFNEKQLFDILEQGE 198
                 56889999985788*********************9985432...4445566666666**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1685.67
//
Query:       CCD25902.2  [L=1019]
Description: hypothetical protein NDAI_0G01260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     2e-220  733.1   1.1   2.5e-219  729.5   1.1    2.1  1  tRNA-synt_1      tRNA synthetases class I (I, L, M and V)
    1.4e-25   90.0   1.7    4.5e-25   88.4   1.7    1.9  1  Anticodon_1      Anticodon-binding domain of tRNA
    1.2e-15   57.1   2.4    1.2e-06   27.6   0.0    4.6  4  tRNA-synt_1g     tRNA synthetases class I (M)
    7.1e-10   38.7   0.0    1.3e-06   28.1   0.0    2.7  2  tRNA-synt_1_2    Leucyl-tRNA synthetase, Domain 2
    1.5e-06   28.4   5.4    3.9e-06   27.0   5.4    1.8  1  Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
  ------ inclusion threshold ------
       0.02   14.2   1.0       0.53    9.6   0.0    2.7  3  tRNA-synt_1e     tRNA synthetases class I (C) catalytic domai
       0.11   12.5   0.6        1.2    9.2   0.0    3.0  4  Peptidase_S24    Peptidase S24-like
       0.27   11.5   2.1        0.7   10.2   2.1    1.6  1  ABC_tran_CTD     ABC transporter C-terminal domain
        8.8    6.4   8.2        2.5    8.1   4.4    2.0  2  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP


Domain annotation for each model (and alignments):
>> tRNA-synt_1  tRNA synthetases class I (I, L, M and V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  729.5   1.1  1.2e-222  2.5e-219       1     602 []      60     686 ..      60     686 .. 0.98

  Alignments for each domain:
  == domain 1  score: 729.5 bits;  conditional E-value: 1.2e-222
  tRNA-synt_1   1 klyekWeeedvfkkelekeke.kke..filvdgPPyvtGslHiGhalaktlkdivirykrmkGkevlyvpGwDhaGlaieakvekklgakekkerkkl 95 
                  k+y++W ++ +f++e++++ + k+e  f+++++PP++tG+lHiGhal+ +++d ++ry+rmkGk+vl++pG+DhaG+a++++vek+++++e+k+++++
   CCD25902.2  60 KWYDWWLQTRAFEPEFTADGKiKPEglFCIPAPPPNITGALHIGHALTISIQDSLVRYYRMKGKTVLFLPGFDHAGIATQSVVEKQIWRQERKTKYDY 157
                  69*****************99888899*********************************************************************** PP

  tRNA-synt_1  96 greefrekvrewkaeyaeeirkqvkrlGvsvDfdreylTldkeleeavkevfvrladkgliyrgkklvnwstklktalselEveykdkk......... 184
                  greef++kv++wk+ y+e+i++qvk+lG+s+D+ re++Tld++l+ av+e+fvrl+d+g+iyr+ +lvnwstkl+t++s+lEv+++            
   CCD25902.2 158 GREEFVKKVWDWKEIYHEKIKNQVKQLGASYDWIREAFTLDPKLSSAVVEAFVRLHDEGVIYRALRLVNWSTKLSTTISNLEVDNRIIPgrtlipvpg 255
                  ***********************************************************************************999988999****** PP

  tRNA-synt_1 185 .......dalihvafpladkee.vklviaTTtPeTllgdtavavnpeldyvitkeklilaeallkslvkkesekkiledergkeLegkevelplvnrk 274
                         ++l+++a+ +a++++  +l++aTT+PeT+ gdtava++p+                               d+r+ +L+gk v++p+ ++k
   CCD25902.2 256 yekkiefGVLTYFAYRVAGSNNgEQLIVATTRPETIHGDTAVAIHPD-------------------------------DPRYIHLHGKSVQHPFLDKK 322
                  *****************98876689**********************...............................******************** PP

  tRNA-synt_1 275 ipiiad.dyvdkeaGtGvVkiaPahdedDyevgkkynlevinildedgtlteea.aefeglkvfdarkkvveelkekglllkaekiehsvpfcerskk 370
                  +pii d + vd+ +GtG+Vki+P+hd++Dyev+++++++v+nil+edg+l+ ++ ++++g+k+fdar+k++e+lke gl++k+e +e+++p+c+rs++
   CCD25902.2 323 LPIILDdKIVDMGFGTGAVKITPGHDFNDYEVSTRHDIDVVNILTEDGKLNSNCgPKWAGMKRFDAREKIIEDLKELGLFIKQEGHEMTIPICSRSGD 420
                  ****994579*******************************************989****************************************** PP

  tRNA-synt_1 371 piiyrateqWfvrvkeladaalkave..kvqfvpkskekryaswleniqdWciSRqrwWGhriplfvsketeevvvreelkelvagreeeeaekkale 466
                  +i++++++qW+v++k+la++a+++++  ++++  ++++++y +wleni+dWciSRq+wWGhr+p+++ + +++   re+ +++ agr+++ea +ka +
   CCD25902.2 421 IIEPMLKPQWWVSQKQLAKDAMDVIKkgEIKMWSNRTKSEYLRWLENIHDWCISRQLWWGHRCPVYFVNIENKDNSREDGNYWIAGRSHDEALIKAKK 518
                  **************************8999999***************************************99*********************999 PP

  tRNA-synt_1 467 keakdklkkekgelekdedvlDvWFsSgswpfstlgypeedteelkkffpadmlleGlDiirgWvarlillslaltgsePfkevlvhglvrdeeGrKm 564
                  k   +k+     +le+dedvlD+WFsS++wpfstlg+p++ t+++++f+p+++l++G+Di+++Wv+r+ill+++ltgs+Pfkev++h+l+rd++GrKm
   CCD25902.2 519 KFPSEKF-----TLEQDEDVLDTWFSSALWPFSTLGWPQK-TKDMEQFYPFSILETGWDILFFWVTRMILLGIKLTGSVPFKEVYCHSLIRDSQGRKM 610
                  9888888.....****************************.********************************************************* PP

  tRNA-synt_1 565 SKslgNvidpldvik.....................................kygadalRltli.lsdvgrdinls 602
                  SKslgNvidpld+i+                                     ++g+dalR+tl+ +++  rdinl+
   CCD25902.2 611 SKSLGNVIDPLDIIHgvtlkelnaktvnsnlsekevkrvireqqkiysrgipQCGTDALRFTLCaYTTGARDINLD 686
                  *************************************************************************986 PP

>> Anticodon_1  Anticodon-binding domain of tRNA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   1.7   2.3e-28   4.5e-25       1     146 [.     732     879 ..     732     885 .. 0.88

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 2.3e-28
  Anticodon_1   1 drwilselnklvkevteayeeyrfnkaasalyeffwndlcdwylelvkprlysesaedk.raaqevllevletllrllaPfmPfitEelwqr..eeee 95 
                  ++w l ++n+ +k ++e++ee +f +  +a+y+  w  +cd+y+e  k+  ++++a  k + a+ vl+e+++++l++++PfmP+i+Eelwqr  +++e
   CCD25902.2 732 EKWSLYQMNNCAKVMNESFEERNFLTGTTAIYQY-WYMICDVYIEYFKSLHHTNDA-IKmDLAKDVLYELIKNGLKMIHPFMPYISEELWQRitRNGE 827
                  59*******************************5.999**********98877665.55455*******************************97777 PP

  Anticodon_1  96 lgkkesimlaewpe.kaeel.ekeleeeevellkeivkairklrselkikpss 146
                  ++k  +i +a++p  +++ + + + + + ++++ ++ kair+l se++i ++ 
   CCD25902.2 828 FEKCVTITKASYPIyDPTIAnYFA-DAQIYDVILNTTKAIRSLLSEYNIIKNG 879
                  88889********88886665333.3789*******************98775 PP

>> tRNA-synt_1g  tRNA synthetases class I (M)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   5.9e-10   1.2e-06       5      61 ..      91     147 ..      87     242 .. 0.70
   2 !   18.8   0.5   2.7e-07   0.00053     162     238 ..     408     484 ..     402     496 .. 0.85
   3 !    6.2   0.0    0.0019       3.7     313     344 ..     594     626 ..     569     633 .. 0.75
   4 ?   -1.7   0.0      0.45   8.9e+02     344     367 ..     663     686 ..     636     692 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 5.9e-10
                   E--B--SS---HHHHHHHHHHHHHHHHHHHTT-EEEEEEEE---SHHHHHHHHHTTS CS
  tRNA-synt_1g   5 talpYangklHlGhllevisaDifaRykrlrgeevlfvcgtDehGtpielkAekegv 61 
                   ++ p ++g+lH+Gh+l++ + D ++Ry r++g+ vlf+ g D+ G++++   ek+  
    CCD25902.2  91 APPPNITGALHIGHALTISIQDSLVRYYRMKGKTVLFLPGFDHAGIATQSVVEKQIW 147
                   56677899**************************************99877665432 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 2.7e-07
                   ...............EEE.EEEEEE-GGGGHHHHHHHH.HH-TT.SHHHHHHHH.HHHHT----EE-ESS-SSS-EET CS
  tRNA-synt_1g 162 telinpksaisgskpevketehlffklskfekklkewieeeeke.leenvkkivkewlkegLkdlaisrdldwGipvP 238
                   +e++ p ++ sg+  e   + +++ + ++++k+  + i++ e + +++++k+  + wl++ ++d++isr+l wG + P
    CCD25902.2 408 HEMTIPICSRSGDIIEPMLKPQWWVSQKQLAKDAMDVIKKGEIKmWSNRTKSEYLRWLEN-IHDWCISRQLWWGHRCP 484
                   5677788999998777777799****************9999888**************9.*************9998 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0019
                   S-EEEE--EE.E--------------HHHHHHH CS
  tRNA-synt_1g 313 kkvvaheylt.vegkKlSkSrgvvvkakealer 344
                   k+v+ h+ +   +g+K+SkS g+v+++ ++++ 
    CCD25902.2 594 KEVYCHSLIRdSQGRKMSKSLGNVIDPLDIIHG 626
                   56666666642689************9998865 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.45
                   HH-HHHHHHHHHHHS-TTS-EEE- CS
  tRNA-synt_1g 344 rldadllRYylaaeapekkDldfs 367
                   ++ +d+lR+ l+a +   +D+++ 
    CCD25902.2 663 QCGTDALRFTLCAYTTGARDINLD 686
                   6789************99999875 PP

>> tRNA-synt_1_2  Leucyl-tRNA synthetase, Domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0011       2.2      16      46 ..     272     304 ..     265     312 .. 0.80
   2 !   28.1   0.0   6.4e-10   1.3e-06      85     145 ..     310     371 ..     306     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
  tRNA-synt_1_2  16 vees..eeklevfttrpdtlfGvtfvalapehp 46 
                    v++s   e+l v ttrp+t++G t va+ p+ p
     CCD25902.2 272 VAGSnnGEQLIVATTRPETIHGDTAVAIHPDDP 304
                    555422579*******************99987 PP

  == domain 2  score: 28.1 bits;  conditional E-value: 6.4e-10
  tRNA-synt_1_2  85 tglkaihPitgekipiwvanyvl.meygtgavmavPahdqrDfeFakkynlpikqvikpede 145
                    +g  + hP+ ++k+pi + + ++ m++gtgav   P+hd +D+e ++++++++ ++++++++
     CCD25902.2 310 HGKSVQHPFLDKKLPIILDDKIVdMGFGTGAVKITPGHDFNDYEVSTRHDIDVVNILTEDGK 371
                    577899***********9986555*******************************9986554 PP

>> Val_tRNA-synt_C  Valyl tRNA synthetase tRNA binding arm
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   5.4     2e-09   3.9e-06       1      65 [.     948    1012 ..     948    1013 .. 0.95

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 2e-09
  Val_tRNA-synt_C    1 DvekeraRLeKeLaklekeiervqkKLanpgFveKAPaeVVeeekaklaeleeqaeklkerLskL 65  
                       D+ ke+++ +K+L+kle+  e +++ L+n +F++KA  eV   +k+kl++ + q   l++  ++L
       CCD25902.2  948 DIRKEIEKNQKKLKKLEGIKENLKRTLSNSEFLKKATMEVQRINKEKLTNIQGQILGLQTTVNNL 1012
                       99**************************************************9998888877777 PP

>> tRNA-synt_1e  tRNA synthetases class I (C) catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.047        93      19      52 ..      96     129 ..      91     191 .. 0.87
   2 ?    9.6   0.0   0.00027      0.53     235     277 ..     591     633 ..     559     647 .. 0.81
   3 ?   -3.3   0.2       2.3   4.5e+03     254     287 ..     915     948 ..     913     963 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.047
                   TTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEE CS
  tRNA-synt_1e  19 vydashlGhaRslvafDilrrilqalgYdvqfvq 52 
                   +  a h+Gha ++ + D l r+ +++g  v f+ 
    CCD25902.2  96 ITGALHIGHALTISIQDSLVRYYRMKGKTVLFLP 129
                   66789**********************9999875 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00027
                   S--EEEEEEE--EEETTBE--TTTT---BHHHHHTTS-HHHHH CS
  tRNA-synt_1e 235 kqlvkyflhnghlkiegekmsksLknfitikdvlkkfdprqlR 277
                    ++ + + h+ +   +g+kmsksL+n+i   d+++ ++ ++l 
    CCD25902.2 591 VPFKEVYCHSLIRDSQGRKMSKSLGNVIDPLDIIHGVTLKELN 633
                   5667788898888999************999999888877765 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.3
                   --TTTT---BHHHHHTTS-HHHHHHHHHSS-TTS CS
  tRNA-synt_1e 254 msksLknfitikdvlkkfdprqlRllllsahyrs 287
                   +s s +n+++   v+k+++ ++  +ll++ +y++
    CCD25902.2 915 LSNSSENIVLNDCVMKSVNDKVKIYLLVKGQYED 948
                   5788899999888999999988888899999964 PP

>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0006       1.2      12      55 ..     276     315 ..     273     327 .. 0.83
   2 ?   -2.6   0.0       2.8   5.7e+03      21      59 ..     493     530 ..     488     536 .. 0.75
   3 ?   -1.4   0.1       1.2   2.4e+03      43      54 ..     646     657 ..     635     659 .. 0.80
   4 ?   -2.8   0.0       3.2   6.4e+03      25      40 ..     876     893 ..     869     924 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0006
                    XTTXEEEEECTS.---TTSEEEEEETTCE-EEEEEEEEETTEEEE CS
  Peptidase_S24  12 ldGdlilVdkfs.epkrGdivvfrlpgeeeayiKrviglpgdrvl 55 
                    ++G+ ++V +++ e ++Gd  v+ +p+++     r+i l+g++v+
     CCD25902.2 276 NNGEQLIVATTRpETIHGDTAVAIHPDDP-----RYIHLHGKSVQ 315
                    68999***98888****************.....66667776666 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.8
                    CTS---TTSEEEEEETTCE-EEEEEEEEETTEEEEE.SS CS
  Peptidase_S24  21 kfsepkrGdivvfrlpgeeeayiKrviglpgdrvllasn 59 
                    k+++ ++G + ++   ++e a+iK  ++ p++++ l+++
     CCD25902.2 493 KDNSREDGNYWIAGRSHDE-ALIKAKKKFPSEKFTLEQD 530
                    5556677788888777776.9999999988888887665 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.2
                    EEEEEEETTEEE CS
  Peptidase_S24  43 iKrviglpgdrv 54 
                    +Krvi++  +++
     CCD25902.2 646 VKRVIREQQKIY 657
                    9*****998776 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 3.2
                    --TTSEEEEEETTCE..- CS
  Peptidase_S24  25 pkrGdivvfrlpgee..e 40 
                    +k+G+i++   +++e   
     CCD25902.2 876 IKNGQIYISVQDDDEttS 893
                    577888777777776551 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.1   0.00035       0.7       7      55 ..     950    1000 ..     948    1005 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00035
  ABC_tran_CTD    7 qreleeleaeIeaLEeeiaeleaeladpelysdp.eklaelsae.leelea 55  
                    ++e+e+  +++ +LE  +++l   l++ e+ ++   +++++++e l++++ 
    CCD25902.2  950 RKEIEKNQKKLKKLEGIKENLKRTLSNSEFLKKAtMEVQRINKEkLTNIQG 1000
                    69*****************************88889999999885666665 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.6   5.1e+03     101     130 ..     859     888 ..     854     896 .. 0.77
   2 ?    8.1   4.4    0.0013       2.5      23     104 ..     930    1012 ..     906    1014 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.6
  Baculo_PEP_C 101 vtNinstLnnllqalnnldlgalsqeleda 130
                   + N+ +++ +ll+  n +++g++    +d 
    CCD25902.2 859 ILNTTKAIRSLLSEYNIIKNGQIYISVQDD 888
                   568999999999999999999987666655 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0013
  Baculo_PEP_C   23 nairlqnvqilaqlatlldaietqLnalsedlksllaeldtrldtlltn...LtdalnalqdtlrneLtnlnsiltnLlssvtNi 104 
                    +++ + +v+i   ++ + ++i +++++ +++lk+ l+ ++++l+ +l+n   L++a  ++q   +++Ltn++ ++  L++ v N+
    CCD25902.2  930 KSV-NDKVKIYLLVKGQYEDIRKEIEKNQKKLKK-LEGIKENLKRTLSNsefLKKATMEVQRINKEKLTNIQGQILGLQTTVNNL 1012
                    444.666777777777778888888888888887.66677777766655555788888888777888888888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1019 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1342  (0.0748508); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.87u 0.28s 00:00:01.14 Elapsed: 00:00:00.51
# Mc/sec: 6062.50
//
Query:       CCD25903.2  [L=517]
Description: hypothetical protein NDAI_0G01270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-31  108.2   3.8    3.2e-31  107.7   0.7    2.6  2  CwfJ_C_1  Protein similar to CwfJ C-terminus 1
    3.4e-18   66.3   1.0    9.5e-18   64.9   1.0    1.8  1  CwfJ_C_2  Protein similar to CwfJ C-terminus 2
  ------ inclusion threshold ------
        4.6    7.1   9.6          2    8.3   0.2    3.7  4  LMP       LMP repeated region


Domain annotation for each model (and alignments):
>> CwfJ_C_1  Protein similar to CwfJ C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.7   5.3e-35   3.2e-31       4     116 ..     255     392 ..     253     398 .. 0.89
   2 ?   -1.1   0.1      0.28   1.6e+03      60      78 ..     490     508 ..     486     515 .. 0.81

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 5.3e-35
                 HHHHHHHHHH-S----SS---SS--S-B-SSEEEE---S-S........STT-EEEEESS--SST.TSS-H...............HHHHHHHHHHHHH CS
    CwfJ_C_1   4 kkrikasldsClfClsnpklekhlivsignkvYlalpkgpL........ssgHvliipieHisal.lslde...............evldeirkfrkal 78 
                 kk +++ ++sC+fC+ np+le+h+i+si+n++Y++++kgpL         sgH+liipieHi++l  ++d                 +  + + ++++l
  CCD25903.2 255 KKARTVLPSSCHFCFTNPNLEDHMILSISNNAYVTIAKGPLtvphgemdFSGHCLIIPIEHIPKLnFKIDSsttstdtatnnifasPLALDFQTYERSL 353
                 56788999****************************************99*************9965555577788877776666556667899***** PP

                 HHH.HHHTT--EEEEEE-SSS-----EEEEE--HHHHTT CS
    CwfJ_C_1  79 vkm.ykkqdkdavvfEissersvHlaiqvipvpksiskk 116
                 v+m ykk+d++++vfEi+s+rs+H+++qv+p+pk++  k
  CCD25903.2 354 VSMnYKKFDMCTIVFEINSDRSIHFHKQVLPIPKYLIMK 392
                 **********************************98655 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.28
                 TTSS-HHHHHHHHHHHHHH CS
    CwfJ_C_1  60 llsldeevldeirkfrkal 78 
                 +++++e++ +e++kf+ka 
  CCD25903.2 490 CQQTKEQEIKEVEKFQKAY 508
                 5778889999******996 PP

>> CwfJ_C_2  Protein similar to CwfJ C-terminus 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   1.0   1.6e-21   9.5e-18      19      98 ..     428     513 ..     407     514 .. 0.90

  Alignments for each domain:
  == domain 1  score: 64.9 bits;  conditional E-value: 1.6e-21
                 HHS-SSS--EEEEE......TTT-..-EEE----HHHH-TTHHHHHHHHHTT--TTT.SS--.----S--H.HHHHHHHHHHTTT-- CS
    CwfJ_C_2  19 rslvknlpyfyvqf......dykgekgyghviedeerfdlqFareviaglLdlekrrkwrkp.krqskeeeekrveaFkkawkkyDw 98 
                   lv++ + +y qf      +++ +++++++ ++e+r+dlqF+r+via lL+l+kr+kw+++ ++q+ke+e k+ve+F+ka+k+yD 
  CCD25903.2 428 MELVNDSSSNYLQFtvyetpETDPKIYVARF-NSEDRIDLQFGRRVIAFLLRLPKRVKWDSQiCQQTKEQEIKEVEKFQKAYKDYDT 513
                 5678888999999988888778898999999.9*****************************************************5 PP

>> LMP  LMP repeated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.15     9e+02     117     136 ..      99     118 ..      93     128 .. 0.59
   2 ?    2.1   0.0     0.027   1.6e+02      16      37 ..     229     250 ..     215     263 .. 0.71
   3 ?    8.3   0.2   0.00033         2      16      57 ..     390     431 ..     387     437 .. 0.92
   4 ?   -2.0   0.5       0.5     3e+03      64      80 ..     491     507 ..     481     515 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.15
         LMP 117 kseieaaneeLkqaLakaka 136
                  s++++ n+e++++ +k k+
  CCD25903.2  99 ESQLKEQNTEINEKFNKVKQ 118
                 44444445555544444433 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.027
         LMP  16 iqkakkeLekeiqkanqalnsn 37 
                 +   k+ Lekei++an+ l+++
  CCD25903.2 229 MPSKKRPLEKEIEDANKGLDRK 250
                 4566788999999999888654 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.00033
         LMP  16 iqkakkeLekeiqkanqalnsnntasmqsakssLdakvteit 57 
                 i k ++ L++++   n+++ +n + +++  +ssLd k +e+ 
  CCD25903.2 390 IMKFQEALDRQVYINNEKFTRNRKLELETFESSLDEKYMELV 431
                 788999*******************************99875 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 0.5
         LMP  64 nkdkeakFkeLeqtRkd 80 
                 ++ ke++ ke+e+  k 
  CCD25903.2 491 QQTKEQEIKEVEKFQKA 507
                 45566666666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       964  (0.0537676); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.29s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3658.66
//
Query:       CCD25904.2  [L=579]
Description: hypothetical protein NDAI_0G01280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-56  190.3   0.0    1.8e-55  188.2   0.0    1.9  1  Pkinase        Protein kinase domain
    8.8e-28   97.3   0.1    8.9e-20   71.0   0.1    2.2  2  Pkinase_Tyr    Protein tyrosine kinase
    0.00027   20.0   0.4    0.00057   18.9   0.4    1.5  1  Haspin_kinase  Haspin like kinase domain
      0.003   18.2   0.9     0.0068   17.1   0.9    1.6  1  Pkinase_C      Protein kinase C terminal domain
     0.0041   16.5   0.0      0.009   15.4   0.0    1.6  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0046   16.3   0.0      0.063   12.6   0.0    2.3  2  Kinase-like    Kinase-like
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.51   10.2   0.0    2.1  2  APH            Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.2   0.0     7e-59   1.8e-55       2     264 .]     185     484 ..     184     484 .. 0.91

  Alignments for each domain:
  == domain 1  score: 188.2 bits;  conditional E-value: 7e-59
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 e ++++G+G++G+Vy a++++t++  A+K+++k+   k +e ++vl+E  il +++++ +v+l+++f+++++lyl +e+v+gg++ +ll + + l++++
  CCD25904.2 185 EMITQVGQGGYGQVYLARKRDTNEVCALKILNKKLLFKLNEtNHVLTERDILTTTRSEWLVKLLYAFQDTQSLYLAMEFVPGGDFRTLLINTRYLKSAH 283
                 67899*****************************999988889***********************************************999****** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.........................................BCTT CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.........................................ltsf 157
                 a++++++++ +++ lH+ g  HrDlKpeN+Lid kg++K+tDFGla+   s+++                                         ++s+
  CCD25904.2 284 ARFYISEMFCAVNALHELGYTHRDLKPENFLIDAKGHIKLTDFGLAAGTISNERihsmkirleevknlefpafkeksiedrrkiyhklrenevnyANSM 382
                 ***********************************************999999999******************************************* PP

                 TSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCST.TH CS
     Pkinase 158 vgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRl.ta 255
                 vg+++Y+A Evl++++y+ +vD+WslG++l+e l   +pfsg++++e ++++l+q     ++l+      + +  +s+   d++++l++ dp +Rl ++
  CCD25904.2 383 VGSPDYMALEVLEGKKYDFTVDYWSLGCMLFESLVSYTPFSGSTTNE-TYENLRQ---WKRTLRR-PRLDNGRPAFSDRTWDFITRLIA-DPLNRLrSF 475
                 *****************************************777776.5666777...4455543.34455666789999999999886.566666257 PP

                 HHHHTSGGG CS
     Pkinase 256 eellqhpyl 264
                 e++++  y+
  CCD25904.2 476 EHVKRMAYF 484
                 777776665 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.1   3.5e-23   8.9e-20       2     161 ..     185     340 ..     184     361 .. 0.89
   2 !   24.1   0.0   7.2e-09   1.8e-05     162     225 ..     379     441 ..     365     453 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.0 bits;  conditional E-value: 3.5e-23
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTT..SSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkee..ateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97 
                  e+ +++G+G +G+V+ ++ +    ++++ +a+K+l+++   + +e++++l+e +i+++++ + +vkll +  ++++l++ +e+v+gGd+++ L ++  
   CCD25904.2 185 EMITQVGQGGYGQVYLARKR----DTNEVCALKILNKKllFKLNETNHVLTERDILTTTRSEWLVKLLYAFQDTQSLYLAMEFVPGGDFRTLLINT-- 276
                  57789************999....77888899999776224667799**********************************************997.. PP

                  TTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEE CS
  Pkinase_Tyr  98 ekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvk 161
                  + l+  +   ++ ++ ++++ L++  + Hrdl   N L++ + ++k++DfGLa  + ++++ ++
   CCD25904.2 277 RYLKSAHARFYISEMFCAVNALHELGYTHRDLKPENFLIDAKGHIKLTDFGLAAGTISNERIHS 340
                  9999999999999****************************************98866666554 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 7.2e-09
                  TTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES- CS
  Pkinase_Tyr 162 keeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrle 225
                  +++   +  +ma+E+l+ kk+    D Ws G +l+E +  + +p++g +++e++e+l++ kr  
   CCD25904.2 379 ANSMVGSPDYMALEVLEGKKYDFTVDYWSLGCMLFESLV-SYTPFSGSTTNETYENLRQWKRTL 441
                  455566779***************************998.99***************8877743 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.4   2.2e-07   0.00057      97     265 ..     172     340 ..     107     349 .. 0.61

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 2.2e-07
  Haspin_kinase  97 lneadlasllnd.......seklssevyqtkekdkevvl..Kviplevledvtiskelslkelkslklvkgtypglllllqdkvlkekpdfyseqq 183
                    l++ +l+++++d       +++ +++vy ++++d++ v+  K++    l         +l+e + +  ++   + l+    + ++k    f+++q 
     CCD25904.2 172 LRKRRLKPKHKDfemitqvGQGGYGQVYLARKRDTNEVCalKILNKKLL--------FKLNETNHV--LTER-DILTTTRSEWLVKLLYAFQDTQS 256
                    4444444444445555555667777777777755555441122222222........233333322..2222.22222333333333356777888 PP

  Haspin_kinase 184 lflvlllkdkGtdLeev.klkswkqalsifwqivkiLyv.aEtkfeFEHRdLhldniLvdknlnvtlidlklsRlessegkvly 265
                    l+l +++  +G+  + + + +  k a   f+      +v a  ++ + HRdL+ +n L+d+++++ l d+ l+  + s++ +  
     CCD25904.2 257 LYLAMEFVPGGDFRTLLiNTRYLKSAHARFYISEMFCAVnALHELGYTHRDLKPENFLIDAKGHIKLTDFGLAAGTISNERIHS 340
                    99999998877654443577777888877775544444424568999***********************99977766666655 PP

>> Pkinase_C  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.9   2.6e-06    0.0068       2      46 .]     504     552 ..     503     552 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.6e-06
   Pkinase_C   2 esdeDtsNFDpeFTeedprdtppddm.....pagspltssvqenFrGFtY 46 
                 +++ D  +FD +FT+e  + ++ d +      +   ++s v+ + +GFt+
  CCD25904.2 504 DNEVDAGYFD-DFTNEADMAKYADVFkrqnkLSAMVDDSAVDSKLVGFTF 552
                 8999******.***************888888888888888899999998 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.5e-06     0.009     129     176 ..     293     336 ..     255     369 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.5e-06
         Kdo 129 rliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlrad 176
                  +++ lh++g  H+dl + n+l+++++    +i l D+  a+  + ++
  CCD25904.2 293 CAVNALHELGYTHRDLKPENFLIDAKG----HIKLTDFGLAAGTISNE 336
                 57899*********************9....99999997766555444 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.5e-05     0.063     143     189 ..     282     327 ..     271     341 .. 0.89
   2 ?    0.8   0.0     0.094   2.4e+02     226     258 ..     398     430 ..     391     480 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.5e-05
  Kinase-like 143 tiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft 189
                   +ar ++  ++   +  L+++g  h +++++n+l d kg ++l++f+
   CCD25904.2 282 AHARFYI-SEMFCAVNALHELGYTHRDLKPENFLIDAKGHIKLTDFG 327
                  6788888.668888999****************************96 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.094
  Kinase-like 226 kmthkldaWqlGlviyriwclklPltlateeak 258
                  k+ + +d W lG   +     + P+   t +  
   CCD25904.2 398 KYDFTVDYWSLGCMLFESLVSYTPFSGSTTNET 430
                  678999**********99999999987765544 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.1   2.8e+03      68      84 ..     255     271 ..     232     301 .. 0.76
   2 ?   10.2   0.0    0.0002      0.51     165     195 ..     300     328 ..     277     330 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.1
                 TEEEEEEE----EE-SS CS
         APH  68 gllfalieyvpgrsllr 84 
                   l++++e+vpg ++++
  CCD25904.2 255 QSLYLAMEFVPGGDFRT 271
                 34789999999998877 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0002
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfed 195
                 + + +H+Dl+p N+l+d ++g++  + Df++
  CCD25904.2 300 ELGYTHRDLKPENFLID-AKGHI-KLTDFGL 328
                 67889************.77777.5667666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       566  (0.031569); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 4094.38
//
Query:       CCD25905.2  [L=496]
Description: hypothetical protein NDAI_0G01290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-65  221.0   4.3    2.2e-65  220.4   4.3    1.3  1  Nop       snoRNA binding domain, fibrillarin
    2.2e-25   89.9   3.3    2.2e-25   89.9   3.3    2.2  2  Prp31_C   Prp31 C terminal domain


Domain annotation for each model (and alignments):
>> Nop  snoRNA binding domain, fibrillarin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.4   4.3   2.4e-69   2.2e-65       3     230 .]     114     352 ..     112     352 .. 0.91

  Alignments for each domain:
  == domain 1  score: 220.4 bits;  conditional E-value: 2.4e-69
                 HHHHHHHHHHHHHHHHHHTTTSTCHHHHS-SHHHHHHHHHHCCCCHCCT.HHTT.......HHHHHHHHHHHHCHHHH..-SSS-S-HHHHHHHHHHHH CS
         Nop   3 deidkeintlhkrvrewYswhFpELeslvkdnleYakvvkligneredlekkee......deelakevimaakvtast..smgaelseedlknikelcd 93 
                 + i++e++++++++r +Ys++F EL+++ +++l+Ya++vk+++ + +dl++ e       + +l+ke+i ++++++++    + +l++++ k+i++ +d
  CCD25905.2 114 HIIKHELQKIYHYLRFLYSKKFNELDTITSSQLQYARIVKIFE-SHQDLSSGELnnlfenEAKLTKEQIIVLNISMKSsfDISFKLDHQKQKEILKSTD 211
                 6799***************************************.5577744422446654555***********999966677899************* PP

                 HHHHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHSSHHHHHCS-HHHHTTTT-HHHHCCCHHT-..--SSSCHHHCSHHHHHTS-CCCHH CS
         Nop  94 rvleleelrkelleYlesrmsaiAPNlsaLvGeevaarLishaGgLtnLakmPastiqilGaekalfralkkk..ntpkyGliyhselvqkatppklkk 190
                 ++ +l+ l++ +++Y++s++s+iAPNl+aL+G+++aa LishaG++  L+++P+++++++G+ k+ +++l+++   ++++G+iy+++l+q  +p +++k
  CCD25905.2 212 MITTLSALQELITHYITSNISHIAPNLCALIGSQIAALLISHAGSILDLSQIPSCNLASIGKSKHQSHELHTSlsGVRQEGYIYDCDLIQ-DQPSENHK 309
                 ***********************************************************************77678**************.55****** PP

                 HHHHHHHHHHHHHHHHH...HTT----SHHHHHHHHHHHHHHH CS
         Nop 191 kiaRllaaKvalaaRiD...afsekdgslGkklreeiekklkk 230
                 +++R+++aK++laaR+D   ++++ dg+lG+++++e+ +k++k
  CCD25905.2 310 QMLRMVCAKASLAARVDagsKTHKGDGTLGQNWKNELLEKIQK 352
                 *****************765444455***************96 PP

>> Prp31_C  Prp31 C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.39   3.5e+03      33      69 ..     305     343 ..     301     355 .. 0.66
   2 !   89.9   3.3   2.5e-29   2.2e-25       3     113 ..     361     474 ..     359     480 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.39
     Prp31_C  33 telrkaqNRmaFGkee..eevgqgdetgkglGmlgkkas 69 
                 +e +k+  Rm  +k++  + v  g++t kg G+lg++ +
  CCD25905.2 305 SENHKQMLRMVCAKASlaARVDAGSKTHKGDGTLGQNWK 343
                 777888888888876611445558888899999999843 PP

  == domain 2  score: 89.9 bits;  conditional E-value: 2.5e-29
     Prp31_C   3 ekkaLpaPddkpkkkRGGrraRkaKerlamtelrkaqNRmaFGkeeeevgqgdetgkglGmlgkk...a..sgriraaqvdkktkaklskklkkklqrs 96 
                  +k+Lp+P+dkpkkkR+Gr++Rk+K+++++++lr+ qNRm+FG++e+++ +  ++++g+Gm++++   a  s +++ ++v+++  ak++k +k++l+++
  CCD25905.2 361 AVKPLPIPEDKPKKKRAGRKFRKYKQQFELSHLRQLQNRMEFGNQEQTTLDAFGEEIGMGMATSSvqnAmgSASLKGLSVNNS--AKMTKVMKRRLKDA 457
                 68************************************************************999754322445566666666..9**********999 PP

     Prp31_C  97 sgvgsgtasslaftpvq 113
                 + + +  + sl+  +v+
  CCD25905.2 458 EYQSNAYMVSLTSDNVD 474
                 96666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1133  (0.0631937); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3786.14
//
Query:       CCD25906.2  [L=1227]
Description: hypothetical protein NDAI_0G01300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.6e-53  178.8   0.0    1.9e-52  177.3   0.0    1.8  1  Nrap_D5   Nrap protein PAP/OAS1-like domain 5
    6.1e-51  172.8   0.2    1.1e-50  172.0   0.2    1.4  1  Nrap_D4   Nrap protein nucleotidyltransferase domain 4
    1.9e-47  160.8   2.1    3.6e-46  156.7   0.3    2.9  3  Nrap_D2   Nrap protein PAP/OAS-like domain
      1e-44  152.2   4.1      1e-44  152.2   4.1    2.6  3  Nrap      Nrap protein domain 1
    3.3e-39  134.5   0.0    7.3e-39  133.4   0.0    1.6  1  Nrap_D3   Nrap protein domain 3
    4.9e-29  101.3   0.1    1.5e-28   99.7   0.1    1.9  1  Nrap_D6   Nrap protein domain 6
  ------ inclusion threshold ------
       0.32   11.2   7.2       0.71   10.1   7.2    1.5  1  DUF4611   Domain of unknown function (DUF4611)


Domain annotation for each model (and alignments):
>> Nrap_D5  Nrap protein PAP/OAS1-like domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.3   0.0   7.3e-56   1.9e-52       1     162 []     897    1081 ..     897    1081 .. 0.96

  Alignments for each domain:
  == domain 1  score: 177.3 bits;  conditional E-value: 7.3e-56
                  -TTHHHHHHHHHHHHHHTT-T.TTS-HHHHHHHHHHHHHS-TTS----SHHHHHHHHHHHHHH--TTT--EE----..................... CS
     Nrap_D5    1 fpaysptvrLvkrWlashlLleghvseelvELlvakvFlqpapysvPssaetGFlrvLelLarwdWkeepLivdln..................... 76  
                  +++ysp+vrL+k+Wl++hlL  gh++eelvEL+++k+F++ +py++P+s+e+GFl++L+++++w+Wke+pLi+dl                      
  CCD25906.2  897 YHFYSPVVRLFKKWLDTHLLF-GHLPEELVELIAMKPFVDCSPYNIPGSVENGFLKILKFISQWNWKEDPLILDLVkpedkledsletsiggsdlds 992 
                  689****************99.*************************************************************************** PP

                  .....------HHHHHHHHHHHHHHHHH-TTSSS----EE-SS-TTS-TTT--HH...HHHHHHHHHHHHHHHHHHH....-SSHHHHTS- CS
     Nrap_D5   77 .....esekltaeeikeietrfealrksdpamnktalfvatekDkegtlwtkekpskvvaaRltaLAkaalelleekevsekldvkslFtp 162 
                        seklt +++k i+t+f++lr+sdp++ + ++fva+++D++g l++++ p   +a+RltaLAk a++ll+++ ++e  ++  lFtp
  CCD25906.2  993 ktmkkLSEKLTLAQYKGIQTNFNNLRNSDPNGIHLQFFVASKNDPSGLLYSSDIP-LAIATRLTALAKVATNLLHTHGINE-QTIGLLFTP 1081
                  ****98999**********************************************.99*******************6653.355567775 PP

>> Nrap_D4  Nrap protein nucleotidyltransferase domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.0   0.2   4.2e-54   1.1e-50       1     213 []     693     895 ..     693     895 .. 0.92

  Alignments for each domain:
  == domain 1  score: 172.0 bits;  conditional E-value: 4.2e-54
                 HHHHTS--.SSTTGGGS-TT--HHHHHHHHHHHHHHHHHHT-.--SS-EEEEEE-SGGGGT--SS---TT.......-.....TTST...EEEEEEE-- CS
     Nrap_D4   1 qldsllrl.kkassseqsstseeafssvikaFdeLekdlrsLedLPLsirsvqpaspalRytsvfppvpvklsppkaaksskeylep...idvvlqfEs 95 
                 q++++l+l + ++s+++s+ + +++ ++ k+Fd+L+k++ ++ +LPLsi+s++p+ +a+Ryts+++pvp+       a     y++p   ++ +l+fEs
  CCD25906.2 693 QFQDILPLpNLPASTNTSVLNLNSYFNLKKSFDNLYKIMFKM-NLPLSIKSILPVGSAFRYTSLCQPVPF-------A-----YSNPdffQELILEFES 778
                 7899999966669999**************************.9*************************7.......4.....888888899******* PP

                 -TTS-SSHHHHHHHHHHHHHHHHHHH..HH-TTSEEEEEE---...----...EEEEEE-TTS-EEEEEEE-TTHHHHHHHHH...HHS-TTHHHHHHH CS
     Nrap_D4  96 SgkWPddleAiqkvKaAFllkiaeeLe.ekkseikarvgldns...sekianqayLdvlkesgfaFrlrilherEltllerqlkdkglakkereeaaea 190
                 S++WPd++++++k+K+AFllk++e+L+ e+ +++k+++++d+s   + +i    +L++l+++g+ Fr+r+l+er+++l+ r++++  +  + + e +++
  CCD25906.2 779 SQRWPDEITSLEKAKTAFLLKMQEQLQaENGNQYKSFFTRDESipyNLEI---VTLNILTPEGYGFRIRVLTERDEVLYLRAISNARN--EIKPELEKT 872
                 ***************************7667788********97766555...9*****************************65554..67999999* PP

                 HHHHHHHHTTHHHHHHHHHHHHT CS
     Nrap_D4 191 laklerrfvhlprhtsaiaglct 213
                 + k++ +++ + rht++i+++++
  CCD25906.2 873 FLKFTAKYLASIRHTRTIENISH 895
                 *******************9986 PP

>> Nrap_D2  Nrap protein PAP/OAS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.7   0.3   1.4e-49   3.6e-46       1     151 [.     348     503 ..     348     504 .. 0.87
   2 ?   -3.3   0.0       2.6   6.8e+03      56      81 ..     662     687 ..     658     697 .. 0.74
   3 ?    2.5   0.0     0.044   1.1e+02      62      85 ..     949     972 ..     943    1011 .. 0.77

  Alignments for each domain:
  == domain 1  score: 156.7 bits;  conditional E-value: 1.4e-49
                 THHHHHHHHHHHHHHTT--SS--T...S-S-SHHHHHHHHHHHTSBBSTTS-BSS-TT--HHHHHHHHHHHHHHS--.SS-EEEE-------BEEES-. CS
     Nrap_D2   1 afkdAclLlkvWlrqRgfgssirk...aggfggfewamllalllqgggkkgrkklskslssyqlfkavlqfLastdl.tkkpiflgaskseeskkesee 95 
                 +fk+A  L+++Wl+qRgf+ss  +   +ggfg+fe+ +l+a+ll+ggg +g+k+l +++ssyqlfk+v+++La++dl t+ ++++ ++++e+s++  ++
  CCD25906.2 348 SFKEATNLGRLWLQQRGFSSSSGHskmTGGFGTFEFVTLMAALLNGGGINGNKILLHGFSSYQLFKGVIKYLATMDLcTDGYLQFYSEPEEDSTTRVSK 446
                 69*****************6655556889************************************************6668999954443443333333 PP

                 --SS....--EEETTT--BTTTT--HHHHHHHHHHHHHHHHHHT-SSS--HHHHHT- CS
     Nrap_D2  96 efskafe.pvlvdpsgklNllakmtassydlLqqeAketlelLddsssdqFdslFlt 151
                  +++ f+ p+l+d s+k+N+l km+ +sy+ L+ +Ak+tl++L++ ++dqF+++Flt
  CCD25906.2 447 YIEEGFQiPTLFDMSTKVNILTKMSIASYQALKLYAKHTLAMLNNVVQDQFANIFLT 503
                 34444444************************************************8 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.6
                 --HHHHHHHHHHHHHHS--SS-EEEE CS
     Nrap_D2  56 lssyqlfkavlqfLastdltkkpifl 81 
                  ss  ++ +vl+f  ++ +++k i+ 
  CCD25906.2 662 SSSEPIISNVLDFVLKKHISEKLIIQ 687
                 68999999******999997765554 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.044
                 HHHHHHHHHHS--SS-EEEE---- CS
     Nrap_D2  62 fkavlqfLastdltkkpiflgask 85 
                 f ++l+f+++++++++p++l+  k
  CCD25906.2 949 FLKILKFISQWNWKEDPLILDLVK 972
                 8899***************94433 PP

>> Nrap  Nrap protein domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2       4.8   1.2e+04      90     122 ..      29      55 ..      23      62 .. 0.51
   2 !  152.2   4.1     4e-48     1e-44       1     152 []     192     345 ..     192     345 .. 0.93
   3 ?   -0.4   0.4       0.4     1e+03      28     142 ..     795     893 ..     791     900 .. 0.63

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.8
                 TTSS-GGGGSTTS--S----........----- CS
        Nrap  90 sdlfklsklspsknnirvetlkeekesseeeet 122
                  ++ ++++ +p+k+  + +      e+ eeee+
  CCD25906.2  29 TGVTEPKQNEPEKEESKSDD-----EE-EEEEE 55 
                 55666666677777777322.....22.22222 PP

  == domain 2  score: 152.2 bits;  conditional E-value: 4e-48
                 EEEEEE--GGG--TTTTSTTHHHHHHHHHHHHHHHHHHHHHHHT..GTE.EEEEEEGGG-TT-EEEEEEE--......-.----GGGTEEEEEEEE--T CS
        Nrap   1 VDlavemPkslfqekDylnlRyfyKRalYLavlaaelskskkke..dlv.kvsfeylngdelkpiLvirpkk......eaekkfskskfririipvaps 90 
                 +D++++mP++lf++kD+ln+R ++KR++YLa+l+++ls + k+e  d + +v+++y+n+d+l+piL+i++ k      ++e++f+k+kf+i++i+ +p+
  CCD25906.2 192 IDVLLTMPETLFEKKDFLNFRALHKRSVYLAYLTHHLSIALKNEklDGYlSVEYTYFNDDPLLPILKISCDKaptsqaNEEYNFYKTKFSINLIIGFPH 290
                 8************************************9877766665555*********************9******99******************* PP

                 TSS-GGGGSTTS--S----........---------HHHHHHHHHTT-HHHHHHHHHHHHHH CS
        Nrap  91 dlfklsklspsknnirvetlkeekesseeeetlppTPlYNssilsdllleehlkllhkakke 152
                 ++f+ +kl+p+kn+irv +       +e++++lp+TPlYN ++ls++++e +lk+l+k+kk+
  CCD25906.2 291 KMFDAKKLLPNKNCIRVVQ-------DENTKELPATPLYNFAVLSSTTYEVYLKYLYKTKKQ 345
                 ****************432.......2457789**************************986 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.4
                 HHHHHHHHHHHHHHHHTGTEEEEEEEGGG-TT-EE.EEEEE---.----GGGTEEEEEEEE--TTSS-GGGGSTTS--S----........-------- CS
        Nrap  28 lYLavlaaelskskkkedlvkvsfeylngdelkpi.Lvirpkkeaekkfskskfririipvapsdlfklsklspsknnirvetlkeekesseeeetlpp 125
                 ++L ++ ++l+ ++++    + + +++  de  p  L i     +  + +   frir+++   ++++ l  +s ++n i++e          e++ l+ 
  CCD25906.2 795 AFLLKMQEQLQAENGN----QYK-SFFTRDESIPYnLEIVTL--NILTPEGYGFRIRVLTE-RDEVLYLRAISNARNEIKPEL---------EKTFLKF 876
                 5677777777664332....222.234444333333777666..33455566677777776.555889999999999999654.........3566778 PP

                 -HHHHHHHHHTT-HHHH CS
        Nrap 126 TPlYNssilsdllleeh 142
                 T  Y +si++  ++e++
  CCD25906.2 877 TAKYLASIRHTRTIENI 893
                 88888888888887765 PP

>> Nrap_D3  Nrap protein domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.4   0.0   2.9e-42   7.3e-39       3     159 ..     511     681 ..     509     682 .. 0.91

  Alignments for each domain:
  == domain 1  score: 133.4 bits;  conditional E-value: 2.9e-42
                 HHSSEEEEEE--.......HHH-SS---HHHHHHHSSHHHHHHHHHHHHHHHHHGGGEEEEEEEEE..T-EE-TTSSS-......BSSS-SEEEEEEEE CS
     Nrap_D3   3 lkfDlvlrikls.......eekakekkeekekldlseaeeallskvssvlkkaLgdRvkliaikle..eeewsiekkks......keakeskleiglll 86 
                 lkfDl+++++l+       ++   +++ + e++++++ e++l++k+ +v+k aLg+R++l +++l   +++++i+k+k+      ++ + + ++++ll+
  CCD25906.2 511 LKFDLCYDLHLPlgnsthtDSLLASAFGPLERIKFITIENFLVNKLLNVVKIALGERITLAEVELVdsKSSFPINKRKVhstsgeNHFNFDYIKLKLLV 609
                 79*********9999987544778999************************************9776345*****7777777887889999******** PP

                 -TTTTT-SEEEEEE-..S--HHHHHHHHHHGGGEEEEE-TTS-EEEEEE----SSS...-HHHHHHHHHHHHHT- CS
     Nrap_D3  87 npenaerlvdkGPsa..edkeeaaeFreFWgekselRrFkDGsIlesvvWeksskserrsiveqIvkyiLkrhlk 159
                 npe++e+lv+kGP++  e ++ea+ F++FWg ks+lRrFkDGsI+++++W++ss++   +i++++++++Lk+h++
  CCD25906.2 610 NPEESEKLVTKGPAHseEASPEATFFKNFWGPKSSLRRFKDGSITHCCIWTTSSSE---PIISNVLDFVLKKHIS 681
                 *************9998999******************************777665...9*************86 PP

>> Nrap_D6  Nrap protein domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.1   5.8e-32   1.5e-28       1     134 [.    1083    1223 ..    1083    1224 .. 0.96

  Alignments for each domain:
  == domain 1  score: 99.7 bits;  conditional E-value: 5.8e-32
                  --S-SEEEEEE-SS--TTTT.......TB---------------.......GGGGGGS-HHHHHHHHHHHHHTTTEEEEE-S-HH.........EEE CS
     Nrap_D6    1 ledYDvvihLkpkvlprlseavaekspgakkkskfkNlderaes.......dkllvkfdpvqllleeLeraygdtllffydklgg.........dvi 81  
                  l+dYD+v+hLk++v  ++s+       g+  +s+f+N+++++         + l+ k+dp+ +l+++L+++y+++l+f+ +++ g         +vi
  CCD25906.2 1083 LKDYDFVVHLKTPVPLKTSS-------GILGSSEFRNIANDQAPtafpsdlAALSEKMDPTFQLMKYLNMKYKNSLIFSSHRYIGvcggnkgnkNVI 1172
                  79*************99866.......777799******999999**************************************************** PP

                  EEEE-GGGSS-EE--TT--S-EEESSSS..EEEE-HHHHHHHHHHHHGGGEEE CS
     Nrap_D6   82 gglwnpsvlkprkfkvnlgystkpvakekkevelNkeaileeiarlGggLvks 134 
                  +gl++p ++k++kfkvnl++++kp++ke  +v+lNkeai++ei  +G++Lv++
  CCD25906.2 1173 TGLIKPLFKKSHKFKVNLDCNMKPIDKE--NVILNKEAIFQEISAFGHELVVD 1223
                  *************************998..9********************86 PP

>> DUF4611  Domain of unknown function (DUF4611)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   7.2   0.00028      0.71      46      91 ..      23      69 ..       8      72 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00028
     DUF4611 46 lstlveqe.aqddvaaagdeeeegededdeeeekniknktksdePpa 91
                l ++ve   ++ ++++ ++ee++++de++eeee++++  +  ++P +
  CCD25906.2 23 LIEQVETGvTEPKQNEPEKEESKSDDEEEEEEEEEVTANKVKNGPTS 69
                445556655666677777888889999999999**999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1196  (0.0667076); expected 358.6 (0.02)
Passed bias filter:                      669  (0.0373138); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.94u 0.28s 00:00:01.22 Elapsed: 00:00:00.42
# Mc/sec: 8679.57
//
Query:       CCD25907.2  [L=1024]
Description: hypothetical protein NDAI_0G01310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.69    9.9   5.3        1.4    9.0   0.0    3.7  3  NPM1-C          Nucleophosmin C-terminal domain


Domain annotation for each model (and alignments):
>> NPM1-C  Nucleophosmin C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2     0.034   6.1e+02      21      32 ..      47      58 ..      45      60 .. 0.85
   2 ?   -1.3   0.3      0.13   2.3e+03      15      35 ..     438     458 ..     435     461 .. 0.88
   3 ?    9.0   0.0   7.7e-05       1.4      22      45 ..     558     581 ..     555     585 .. 0.89

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.034
      NPM1-C 21 eaKFinyvkncF 32
                  K+ n++ ncF
  CCD25907.2 47 ATKCRNFIANCF 58
                579********* PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.13
      NPM1-C  15 vsLPkveaKFinyvkncFkmt 35 
                 +++P+  +K  n   n+F ++
  CCD25907.2 438 IPFPEANQKNNNIKTNSFEVS 458
                 689***************987 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 7.7e-05
      NPM1-C  22 aKFinyvkncFkmtDqeviqdLwq 45 
                  +++n++++ Fk  +q  i  Lw 
  CCD25907.2 558 TNLENFIRHLFKRKNQHLIPPLWS 581
                 689********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1024 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3133  (0.174745); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        90  (0.0050198); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.14u 0.27s 00:00:01.41 Elapsed: 00:00:00.45
# Mc/sec: 6788.98
//
Query:       CCD25908.2  [L=574]
Description: hypothetical protein NDAI_0G01320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   6.2e-161  535.8   1.2   1.8e-160  534.2   1.2    1.7  1  Catalase      Catalase
    1.1e-12   47.9   0.0    2.7e-12   46.7   0.0    1.6  1  Catalase-rel  Catalase-related immune-responsive
  ------ inclusion threshold ------
      0.079   13.0   0.0       0.22   11.6   0.0    1.7  1  DUF2111       Uncharacterized protein conserved in archaea (D


Domain annotation for each model (and alignments):
>> Catalase  Catalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  534.2   1.2  3.1e-164  1.8e-160       3     377 ..      18     424 ..      16     429 .. 0.93

  Alignments for each domain:
  == domain 1  score: 534.2 bits;  conditional E-value: 3.1e-164
                 TTS-B-S.-SSS-EEESTTS-BBTT-HHHHHHHHHHHT------SS--SEEEEEEEEEESS--TTT---GGGSSTT-EEEEEEEEE-SS--TT--SSSS CS
    Catalase   3 seGapvs.dnqnsltagerGplllqdvhlieklahfdreripeRvvhAkGagahgeFevtkdisdltkakllskvgkktpvlvRfStvagekgsadtaR 100
                 ++G+ ++ ++++s+  +++Gplllqd++lie+lahfdrer+peRvvhA+G g+  eFe+t+++sd+t ak +++vg k p +vRfStv+gekgsadt+R
  CCD25908.2  18 ENGVAYPhHPYSSQYSRPDGPLLLQDINLIETLAHFDRERVPERVVHAHGGGCRVEFELTDSLSDITFAKPYQEVGYKFPGVVRFSTVGGEKGSADTVR 116
                 6788886478999999*********************************************************************************** PP

                 S--EEEEEEEETTEEEEEEEESSSS-S-S-GGGHHHHHHHHSB-TTT-SB...-HHHHHHHHHT-GGGHHHHHHHHSGGGSBS-GGGS-EE--S-EEEE CS
    Catalase 101 dvrGfavkfyTeeGnwDlvgnntpvFfirDpikfpdlihsqkrepqtnlk...daamfwdflslnpeslhqvlilfsdrgipksyrhmngygvhtfklv 196
                 d+rG ++kfyT +Gn+D+v+nntpvFfi+D++kfp++ihsqkr+pqtnl+   d++m+wd+l++npes+hqv+++f+drgipk++ +m++y++h+fk++
  CCD25908.2 117 DPRGASFKFYTPWGNHDWVFNNTPVFFIKDALKFPHFIHSQKRHPQTNLNaasDSSMYWDYLTQNPESIHQVTYMFGDRGIPKNWAEMSSYSGHAFKFI 215
                 *************************************************99888999****************************************** PP

                 -TT--EEEEEEEEEETT---B--HHHHHHHHHH-TTHHHHHHHHHHHTT---EEEEEEEEEEHHHHTTTHHHHT-TT----TTTS--EEEEEEEEEE-- CS
    Catalase 197 nkegevvyvkfhfktkqgvknltaeeaeklagedpdyatrdLyeaiekgeypewelyvqvmteeeaeklrfnilDlTkvwpekevplrevGkltLnrnp 295
                 n++ge++yv++h+k+++++++l+ ee ++lag++p+y++++Lye++++g+ p+ e+++q+mt+++ae +r++i DlTk+wp+k++plr++G++ +++n+
  CCD25908.2 216 NRKGEITYVQIHVKPEKDFTTLSVEEGNELAGSNPNYNQEKLYEQVASGTAPKLECFIQTMTPKQAELFRYSINDLTKIWPHKDFPLRKFGEIRFTENV 314
                 *************************************************************************************************** PP

                 S-HHHHTTT----TT-.--TTEE--S-HHHHHHHHHHHHHHHHHT-TTGGGSGGG--..........................-..--..-S----TT- CS
    Catalase 296 enyFaevEqvafspsn.lvpGiepseDklLqgRlfsYadtqryRlGvnyqqlpvNrp..........................kakva..nyqrdGamr 365
                 en+F+e+Eq+afspsn ++pGieps+D++Lq+RlfsY+dtqr+RlG ny+qlpvNrp                          +++++  ny+rdG+++
  CCD25908.2 315 ENFFEEIEQIAFSPSNtCIPGIEPSNDPVLQSRLFSYPDTQRHRLGGNYNQLPVNRPrnvvcpvtgkrmagnggvgslngtplECPYNpaNYHRDGTAT 413
                 ***************989***************************************777666666666666666666666664444433566666666 PP

                 .....S-S---S CS
    Catalase 366 veankgkepnYe 377
                 + +n+g++pn++
  CCD25908.2 414 L-YNYGNQPNFI 424
                 4.5666666665 PP

>> Catalase-rel  Catalase-related immune-responsive
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   4.5e-16   2.7e-12       7      65 .]     493     552 ..     490     552 .. 0.97

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 4.5e-16
                   SSHHHHHHHH.HS-HHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH-HHHHHHHHHHH CS
  Catalase-rel   7 hfsQagllyr.smseeekerlvnniafelskvedeeiqerqlehfakvDpdlgqrVaeal 65 
                   +f+Q+++ly+ ++++++k+ +v+n++++ s +++e ++ r+ ++f   ++dlg+++ae+l
    CCD25908.2 493 DFEQPRALYEnVFNDDDKKTFVKNVVDHASTCKTEIVKVRVAQYFGLLNKDLGSQIAEGL 552
                   8********88***********************************************98 PP

>> DUF2111  Uncharacterized protein conserved in archaea (DUF2111)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.7e-05      0.22      20      44 ..     437     461 ..     424     469 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.7e-05
     DUF2111  20 vriekgkvvdedYtgpvLeevleeg 44 
                 + ++++kv d++Y+g vLe++++++
  CCD25908.2 437 LTLDDDKVEDSKYQGVVLEDAVKAD 461
                 6799****************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       452  (0.0252106); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4095.40
//
Query:       CCD25909.2  [L=370]
Description: hypothetical protein NDAI_0G01330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     1e-122  408.8   0.2   1.6e-122  408.1   0.2    1.3  1  Pil1      Eisosome component PIL1
  ------ inclusion threshold ------
       0.11   12.5   0.0       0.29   11.2   0.0    1.6  1  SLT_beta  Shiga-like toxin beta subunit
       0.88    7.8  12.3          1    7.5  12.3    1.2  1  CDC45     CDC45-like protein


Domain annotation for each model (and alignments):
>> Pil1  Eisosome component PIL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.1   0.2  2.6e-126  1.6e-122       1     265 []       1     264 [.       1     264 [. 0.99

  Alignments for each domain:
  == domain 1  score: 408.1 bits;  conditional E-value: 2.6e-126
        Pil1   1 mnraysirsskastasesqteaspksstkskrlfslkslrsslrkqaaasfsPelarrLakLikseknlvraheaaarerksiakqlseWGedtdddvs 99 
                 m+r+ys+r+s+a+ta++ q++++p+sstks r+f+  +++ ++r+++a+sf+Pel+r+L++L+k+ekn++r+ e a++er+++akqls+WG ++dddvs
  CCD25909.2   1 MHRTYSLRNSRAPTAAQLQSPPPPTSSTKS-RFFGKGGIAYNFRTKTAGSFGPELSRKLSQLVKIEKNVLRSLEIASNERRDAAKQLSVWGLENDDDVS 98 
                 8****************************9.******************************************************************** PP

        Pil1 100 DvsDklgvllselgeledayadrldqsRatlKsirniEasvqpsRdkkekladeiaklkakepqserlvvlEqeLvraeaeslvaeaqlsnitReklke 198
                 D++Dklgvl++e++el+d+++dr+dq+R+t+Ksir+iE svqpsRd+k+k++d+ia lk+k+pqs+++ vlEqeLvraeaeslvaeaqlsnitR+kl++
  CCD25909.2  99 DITDKLGVLIYEVSELDDQFIDRYDQYRLTMKSIRDIEGSVQPSRDRKDKITDKIAYLKYKDPQSTKIEVLEQELVRAEAESLVAEAQLSNITRSKLRA 197
                 *************************************************************************************************** PP

        Pil1 199 aytaefdaliEraeKlallarygkrLlellddspvtpGetrpaYdgaeatrqiladaedaLrewrld 265
                 a++++fd++iE++eK+al+a+ygk+LlellddspvtpGetrpaYdg+ea++qi++dae+aL+ew+ld
  CCD25909.2 198 AFNYQFDSIIEHSEKIALIAGYGKALLELLDDSPVTPGETRPAYDGYEASKQIIIDAESALNEWTLD 264
                 ****************************************************************985 PP

>> SLT_beta  Shiga-like toxin beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.8e-05      0.29       4      50 ..     147     191 ..     145     202 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.8e-05
    SLT_beta   4 dcvtGkveytkyndddtftvkvGdkelftnrwnlqslllsaqitGmt 50 
                 d +t k+ y ky d ++  + v ++el   r + +sl+  aq++ +t
  CCD25909.2 147 DKITDKIAYLKYKDPQSTKIEVLEQELV--RAEAESLVAEAQLSNIT 191
                 789***********************97..778999**999999887 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  12.3   0.00018         1     115     198 ..     271     344 ..     186     369 .. 0.49

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00018
       CDC45 115 eleeereayealeeeeesd.eede....eeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee.sddddersrkrrrsepsa 198
                 +l+ +++ ye  eeee+++ +  e    eee             ee+ee+eee+ e+++++++  +d+ ++  ++ d ++++++ se++ 
  CCD25909.2 271 TLSFKQD-YEDYEEEEDDEgQ--EpqipEEE-------------EEEEEEEEEEMEDQGQEQSIVEDNLDShPSQLDPEQQQQTWSEEEV 344
                 3333222.3333333333211..11222111.............1111111111111122222111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1690  (0.0942607); expected 358.6 (0.02)
Passed bias filter:                      564  (0.0314574); expected 358.6 (0.02)
Passed Vit filter:                        86  (0.0047967); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 2641.67
//
Query:       CCD25910.2  [L=335]
Description: hypothetical protein NDAI_0G01340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.7e-37  127.1  15.1    4.7e-37  127.1  15.1    2.2  2  DHHC          DHHC palmitoyltransferase
  ------ inclusion threshold ------
        2.4    7.8  10.9        3.5    7.3   4.6    2.3  2  BPD_transp_1  Binding-protein-dependent transport system inne
        2.7    8.0  12.3       0.66   10.0   1.6    2.9  3  TNFR_16_TM    Tumor necrosis factor receptor member 16 trans-


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.5     0.083     5e+02     104     127 ..      12      35 ..       4      40 .. 0.51
   2 !  127.1  15.1   7.9e-41   4.7e-37       3     131 ..     104     227 ..     102     229 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.083
        DHHC 104 llfllllgllllfhlylilrnlTt 127
                 l+  +l+++l+l   y i++ ++t
  CCD25910.2  12 LFPRCLTTFLFLWTSYVIITRINT 35 
                 344445555555555555544444 PP

  == domain 2  score: 127.1 bits;  conditional E-value: 7.9e-41
        DHHC   3 kelkfCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllv 101
                  + + C+tc+++kp+r++Hc++Cn+c+l++DHhCpw+  ciG++N+k+F++fl+y+++++++al l+++ +v+ +++++   +++ ++      +++ +
  CCD25910.2 104 GRYRLCQTCQVWKPDRCHHCSTCNKCILKMDHHCPWFAECIGFKNQKFFIQFLIYCTIYAFVALGLISYQFVNWYKNQNYMNEYIDFT-----LLIVGL 197
                 57799***********************************************************************999977775544.....599999 PP

        DHHC 102 lsllfllllgllllfhlylilrnlTtieam 131
                 l++++ + ++++  f++y++l+n+Ttie++
  CCD25910.2 198 LAFVISISVLAFSSFSIYQVLKNRTTIEMY 227
                 99**************************86 PP

>> BPD_transp_1  Binding-protein-dependent transport system inner membrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.4    0.0053        32      52      80 ..      11      40 ..       4      42 .. 0.83
   2 ?    7.3   4.6   0.00059       3.5     121     184 ..     155     223 ..     151     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0053
  BPD_transp_1 52 lilp.viillllsaapyvrlirraalrslp 80
                  + +p  ++++l+ ++ yv+++r + + ++p
    CCD25910.2 11 TLFPrCLTTFLFLWTSYVIITRINTIPTIP 40
                  445558999****************99998 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00059
  BPD_transp_1 121 llggavlleflgswpGlgtllleailgydyseis.........nggvlalviavlllnlvadilqrlldprvr 184
                   +l  +++  f++    lg+   ++ ++y  ++ +         ++g+la+vi++ +l ++++ ++++l  r++
    CCD25910.2 155 FLIYCTIYAFVA----LGLISYQFVNWYKNQNYMneyidftllIVGLLAFVISISVLAFSSFSIYQVLKNRTT 223
                   555566666777....8888888888888887778889999999************************99975 PP

>> TNFR_16_TM  Tumor necrosis factor receptor member 16 trans-membrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.1   6.4e+03      27      34 ..     106     113 ..     106     114 .. 0.89
   2 ?   10.0   1.6   0.00011      0.66       9      30 ..     157     178 ..     155     183 .. 0.82
   3 ?    4.4   1.0    0.0063        37      16      26 ..     192     202 ..     190     203 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.1
  TNFR_16_TM  27 fKrwksck 34 
                 ++++++c+
  CCD25910.2 106 YRLCQTCQ 113
                 89****95 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00011
  TNFR_16_TM   9 iYcSILaaVvvgLlaYvifKrw 30 
                 iYc I a+V +gL+ Y +  + 
  CCD25910.2 157 IYCTIYAFVALGLISYQFVNWY 178
                 9*************99665555 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0063
  TNFR_16_TM  16 aVvvgLlaYvi 26 
                 + +vgLla+vi
  CCD25910.2 192 LLIVGLLAFVI 202
                 579*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1431  (0.0798148); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.23s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2537.97
//
Query:       CCD25911.2  [L=831]
Description: hypothetical protein NDAI_0G01350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.12   12.9   0.8        4.6    7.8   0.0    2.7  2  Porph_ging  Protein of unknown function (Porph_ging)
        8.7    6.5   9.7        1.2    9.3   0.4    3.4  3  STN1_2      CST, Suppressor of cdc thirteen homolog, complex 


Domain annotation for each model (and alignments):
>> Porph_ging  Protein of unknown function (Porph_ging)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00051       4.6      51      68 ..     180     197 ..     132     200 .. 0.72
   2 ?    2.4   0.3     0.026   2.3e+02       3      38 ..     640     675 ..     639     721 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00051
  Porph_ging  51 epkevevtAWytpqiPvs 68 
                   ++v+ tAW+t +iP++
  CCD25911.2 180 GIDTVNKTAWFTIDIPIE 197
                 4567778*********96 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.026
  Porph_ging   3 ltketkqIgqYtcfkAtavkeveetdfsnlrrrerr 38 
                 l+++tk+I + +c k    +e+++++++++ +++++
  CCD25911.2 640 LGHNTKTITRTSCSKGCSKQEIKTSQIQDIFTNKTE 675
                 56899***************9999999988766554 PP

>> STN1_2  CST, Suppressor of cdc thirteen homolog, complex subunit STN1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.1      0.12   1.1e+03      33     113 ..     422     502 ..     412     512 .. 0.75
   2 ?    9.3   0.4   0.00013       1.2      57     116 ..     618     676 ..     579     680 .. 0.78
   3 ?    1.8   0.1     0.026   2.4e+02      61     116 ..     673     725 ..     671     734 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.12
                 XXHHHHSCGGSHHHHHHHHHHHHHHHHHHCT-SEEEHHHHHT-HHHHHHHSSHHCH-SS---SS----SCHHHHHHHHHHH CS
      STN1_2  33 keesssdasellkslvsllsekikefllekkvqtfyqqeletveslvslaskpvkessaaeevevagesaskqirslfkea 113
                 + +  s++s+++++++++ls +++  l +++ ++ +   l  ++s  +   ++ + + ++++ +++   +s++i  + ke 
  CCD25911.2 422 RTKIVSSSSSNITTSTYILSSSVQSTLNSSSASSSSIPTLTYISSKSAYSIQNSSYAPSTSSSSSTPIPTSSNITAITKES 502
                 5556666777799999***************99999999999977766655555555555555556666888888887775 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00013
                 HHHHHCT-SEEEHHHHHT-HHHHHHHSSHHCH-SS---SS----SCHHHHHHHHHHHHHH CS
      STN1_2  57 efllekkvqtfyqqeletveslvslaskpvkessaaeevevagesaskqirslfkealql 116
                  f  ++k+++  ++++ t+ sl+ + +k ++++s+++   +++e +++qi+++f++ +++
  CCD25911.2 618 IFTNQTKITSTIPAQVTTLISLLGHNTKTITRTSCSKGC-SKQEIKTSQIQDIFTNKTEI 676
                 277999*****************************9877.67788999*******99876 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.026
                 HCT-SEEEHHHHHT-HHHHHHHSSHHCH-SS---SS----SCHHHHHHHHHHHHHH CS
      STN1_2  61 ekkvqtfyqqeletveslvslaskpvkessaaeevevagesaskqirslfkealql 116
                 ++++++ yq ++ t+ sl+ + +k ++++++    + ++ s++++i+    e +++
  CCD25911.2 673 KTEITSTYQPQVTTLLSLIGHNTKTITKKTS---CSDSSGSTGQRIKTTQIEDISI 725
                 5677888888888887777776666655554...4455678999999887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1325  (0.0739026); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.26s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 5720.96
//
Query:       CCD25912.2  [L=144]
Description: hypothetical protein NDAI_0G01360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0011   18.9   0.1     0.0015   18.5   0.1    1.2  1  Pam16     Pam16
  ------ inclusion threshold ------
       0.02   14.8   0.1       0.28   11.2   0.1    2.1  2  Pesticin  Bacterial toxin homologue of phage lysozyme, C-term
      0.024   14.8   0.1      0.048   13.8   0.1    1.5  1  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> Pam16  Pam16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   2.5e-07    0.0015      55     109 ..      79     137 ..      65     144 .] 0.86

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.5e-07
                 X-HHHHHHHHT--G....--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHH CS
       Pam16  55 isleeslkilnvee....dlnreevekryehlfevndkskGGslylqskvfrakerlde 109
                 +s  e+l iln++     +l+++ ++k++   + +n  +kGGs yl  k+  ak+ l +
  CCD25912.2  79 MSEPEALLILNISAkevnHLDEKFLNKKHRKAMYMNHPDKGGSPYLAIKINEAKDVLMH 137
                 67789*******9877777888899****************************998765 PP

>> Pesticin  Bacterial toxin homologue of phage lysozyme, C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   4.6e-05      0.28      46      99 ..      55     108 ..      44     119 .. 0.84
   2 ?    1.4   0.0     0.046   2.8e+02      60      77 ..     121     138 ..     117     141 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 4.6e-05
                 HHHTT--HHHHHHTTTTTT-BCHHHHHHHHHS--B--HHHHHHHHHHHHHHHHH CS
    Pesticin  46 lkalglpaslvdkLepYlglkkqeAkdflaknPLslseeeaklldkavkdkald 99 
                 +++ +lp++l+++L+ Y g   +  ++  a   L++s++e++ ld+++ +k   
  CCD25912.2  55 FQSTQLPSDLKRQLDQYQGGFYERMSEPEALLILNISAKEVNHLDEKFLNKKHR 108
                 57889*************977776666666667*************99988765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.046
                 TTTTT-BCHHHHHHHHHS CS
    Pesticin  60 epYlglkkqeAkdflakn 77 
                 +pYl  k +eAkd+l + 
  CCD25912.2 121 SPYLAIKINEAKDVLMHS 138
                 69************9865 PP

>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1     8e-06     0.048       6      55 ..      88     137 ..      86     142 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8e-06
                 HTSSTT....G-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTS CS
        DnaJ   6 Lgvskd....asedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsd 55 
                 L++s +     +e+ + k++rk + + HPDk  ++p       +ineA +vL+ 
  CCD25912.2  88 LNISAKevnhLDEKFLNKKHRKAMYMNHPDKG-GSP---YLAIKINEAKDVLMH 137
                 6666554433456669****************.777...333469999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1111.15
//
Query:       CCD25913.2  [L=1068]
Description: hypothetical protein NDAI_0G01370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-53  180.6   0.0    9.7e-45  152.2   0.0    2.5  2  AAA           ATPase family associated with various cellular 
    3.8e-06   26.8   0.4    2.3e-05   24.3   0.1    2.6  3  Vps4_C        Vps4 C terminal oligomerisation domain
    1.3e-05   24.8   0.0     0.0095   15.7   0.0    3.1  3  AAA_lid_3     AAA+ lid domain
    7.4e-05   22.9   0.0    0.00044   20.4   0.0    2.3  2  AAA_2         AAA domain (Cdc48 subfamily)
    0.00021   21.1   0.0    0.00066   19.4   0.0    1.8  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
    0.00044   20.4   1.9     0.0032   17.6   0.3    2.9  2  ANAPC9        Anaphase-promoting complex subunit 9
     0.0005   19.2   0.1     0.0016   17.6   0.0    1.9  2  Parvo_NS1     Parvovirus non-structural protein NS1
     0.0012   19.3   0.0       0.11   12.8   0.0    2.6  2  AAA_16        AAA ATPase domain
      0.002   17.7   0.0     0.0047   16.5   0.0    1.6  1  AAA_7         P-loop containing dynein motor region
     0.0026   18.1   0.0      0.012   16.0   0.0    2.2  1  RNA_helicase  RNA helicase
     0.0036   17.3   0.0      0.019   14.9   0.0    2.3  1  AAA_5         AAA domain (dynein-related subfamily)
     0.0042   17.4   0.0      0.093   13.0   0.0    3.0  3  AAA_22        AAA domain
  ------ inclusion threshold ------
      0.013   16.1   0.0        0.1   13.1   0.0    2.6  2  AAA_18        AAA domain
      0.017   14.5   0.0      0.041   13.2   0.0    1.6  1  ATPase        KaiC
      0.018   14.3   0.0      0.038   13.2   0.0    1.5  1  TIP49         TIP49 P-loop domain
      0.018   14.8   0.0      0.039   13.7   0.0    1.5  1  IstB_IS21     IstB-like ATP binding protein
       0.02   14.9   0.0       0.11   12.5   0.0    2.3  2  AAA_14        AAA domain
      0.024   14.0   0.1      0.047   13.1   0.1    1.4  1  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.068   13.2   0.0       0.29   11.1   0.0    2.0  2  TsaE          Threonylcarbamoyl adenosine biosynthesis protei
      0.074   13.4   0.3        1.5    9.2   0.0    2.9  2  RNA_pol_Rpb4  RNA polymerase Rpb4
        0.1   12.5   0.0       0.85    9.5   0.0    2.4  2  AAA_3         ATPase family associated with various cellular 
       0.23   11.0   0.0       0.69    9.4   0.0    1.7  2  AAA_25        AAA domain
       0.33   10.9   2.4        4.9    7.1   0.0    2.7  2  ResIII        Type III restriction enzyme, res subunit


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.3e-08     1e-05       6     127 ..     511     642 ..     505     647 .. 0.72
   2 !  152.2   0.0   1.2e-47   9.7e-45       1     130 [.     800     931 ..     800     933 .. 0.97

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 1.3e-08
                 STTSSHHHHHHHHHHHHTHEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTS.....TSEEEEEETGGGHHHHH...TTCCCHHHHHHHHHH....HH CS
         AAA   6 ppGtGKTllakavakelgvefleisgsell.skyvgesekkirelfkeakeka.....kpsilfiDEidalaksr...sgseseeeervvnqL....lt 91 
                  p +GK +l+k  a  lg+++lei++s+l  ++   +s +ki + +++ k ++     + +i+ + +++ + ++    +   + e++++ +++     +
  CCD25913.2 511 HPNVGKKTLVKHTADWLGFHLLEIDCSSLPlNNGSLDSTNKILGSIRA-KIENvlsytTSTIITLSNLEYILSKTdpnQ---DPESTKLSQTMdlgiNE 605
                 699**************************9888666666666666643.333345774559**************5542...44444444443222167 PP

                 HHHHTTTSSSTEEEEEEESSGGGSTHHHHS.TTSSEE CS
         AAA  92 eldgvkkkeskvivigatnrpdkldpallr.gRfdrk 127
                  ++ ++++ + v++i++ n++d l++ ++   +f+  
  CCD25913.2 606 IINHFTTNFKGVVFIIIMNNIDILPQNIRTkLKFEYL 642
                 77888888888******************54555444 PP

  == domain 2  score: 152.2 bits;  conditional E-value: 1.2e-47
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH..TTCCCHHHHHHHHHHHHHHHHTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr..sgseseeeervvnqLlteldgvk 97 
                 +l+yGppGtGKTl+aka+a++++ +f++++g+ell++y+gese+++r++f++a+  + p+++f+DEid++a++r  +g++ ++ +r+v+qLl+eldg++
  CCD25913.2 800 ILFYGPPGTGKTLMAKAIASNFSLNFFSVKGPELLNMYIGESEANVRKVFQRARDAK-PCVIFFDEIDSVAPKRgnQGDSGGVMDRIVSQLLAELDGMS 897
                 69***************************************************9997.****************9888899****************** PP

                 TSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEET CS
         AAA  98 kkeskvivigatnrpdkldpallr.gRfdrkiei 130
                 + ++ +++igatnrpd ld+allr gRfd+ +++
  CCD25913.2 898 TGDDGIFIIGATNRPDLLDEALLRpGRFDKLLYL 931
                 *****************************98876 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       8.4   6.5e+03      39      54 ..     508     523 ..     506     524 .. 0.86
   2 ?   -2.6   0.0       7.5   5.9e+03       8      26 ..     755     773 ..     752     777 .. 0.73
   3 !   24.3   0.1     3e-08   2.3e-05      19      53 ..    1018    1052 ..    1010    1059 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 8.4
      Vps4_C  39 kkarptVskeDLekhe 54 
                  +++p V k+ L kh+
  CCD25913.2 508 YSNHPNVGKKTLVKHT 523
                 6899*********996 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 7.5
      Vps4_C   8 dpgaiemtwmdipsdklle 26 
                 +p+  + tw di + +l +
  CCD25913.2 755 APKIPKVTWDDIGGVELIK 773
                 6666789999999877766 PP

  == domain 3  score: 24.3 bits;  conditional E-value: 3e-08
      Vps4_C   19 ipsdkllePpvtlkDflkalkkarptVskeDLekh 53  
                  +++++ ++  v+++Df+ka+k+ +p+Vs+++L+ +
  CCD25913.2 1018 VATEEDTNVIVNMEDFIKAIKELKPSVSQDELDHY 1052
                  6667777789**********************988 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.024        19       1      34 [.     680     721 ..     680     739 .. 0.73
   2 !   15.7   0.0   1.2e-05    0.0095       2      41 ..     957     997 ..     956    1005 .. 0.86
   3 ?   -1.2   0.0       2.4   1.9e+03      30      45 .]    1019    1035 ..    1017    1049 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.024
   AAA_lid_3   1 dvdlkeLAerTeGySGADlaalcreAallAlrr........g 34 
                 +v++++LA  ++  +   ++++++ A   Al++        +
  CCD25913.2 680 NVNVSNLALHSASLTPLAIKSIVQTAKYKALKDrqeeentdT 721
                 799999999999999999*************88444444440 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.2e-05
   AAA_lid_3   2 vdlkeLAerTe.GySGADlaalcreAallAlrrgikeitme 41 
                 v l  LA +++ +y+GAD  alc  + l+A+ r   ei+++
  CCD25913.2 957 VKLPILADKCPfNYTGADFYALCSDSMLNAMTRIASEIDEK 997
                 667779*****99******************9987777654 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.4
   AAA_lid_3   30 Alrrgike.itmedfee 45  
                  A ++++   ++medf++
  CCD25913.2 1019 ATEEDTNViVNMEDFIK 1035
                  55677774499999965 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.6   3.6e+03       8      46 ..     508     542 ..     502     599 .. 0.60
   2 !   20.4   0.0   5.6e-07   0.00044       3      89 ..     797     877 ..     795     897 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.6
                 EE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---- CS
       AAA_2   8 llgptgvGktelakalaellfvkkekkliradasellee 46 
                   ++  vGk+ l k +a+ l      +l  +d+s+l  +
  CCD25913.2 508 YSNHPNVGKKTLVKHTADWLGF----HLLEIDCSSLPLN 542
                 4556679999999999999987....8888888887663 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 5.6e-07
                 ---EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHH.TTS......EEEEETGGG---------- CS
       AAA_2   3 iisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgae.egG......ivllDEidKihpkessgad 89 
                  + il+ gp g+Gkt++aka+a+  ++    ++  +   ell          + ig+++++v++  ++       ++++DEid ++pk+ ++ d
  CCD25913.2 797 RSGILFYGPPGTGKTLMAKAIASNFSL----NFFSVKGPELLN---------MYIGESEANVRKVfQRArdakpcVIFFDEIDSVAPKRGNQGD 877
                 5679*********************97....777777777776.........33333333333221222333577************7444444 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   8.5e-07   0.00066      35      70 ..     799     834 ..     788     873 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 8.5e-07
      RuvB_N  35 hvllyGpPGlGkttlakiiakelgvklkitsgPvle 70 
                  +l+yGpPG Gkt +ak ia+++  ++ +  gP l 
  CCD25913.2 799 GILFYGPPGTGKTLMAKAIASNFSLNFFSVKGPELL 834
                 59*******************************874 PP

>> ANAPC9  Anaphase-promoting complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.3   4.1e-06    0.0032      32     101 ..     303     397 ..     283     411 .. 0.73
   2 ?    0.3   0.1      0.97   7.6e+02      24      51 ..     441     468 ..     425     487 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.1e-06
      ANAPC9  32 lrkpaklskYDysvftnkktedeesllpaikeSqikawesaEriaqnliFdkd..............................dsdkevdededee.ds 99 
                 + +  k+  YD  +f  +k+     +++ +  S++ +w ++ +  qn+iF++                               d+++++++d+d+  d 
  CCD25913.2 303 NDNTIKITPYD--SFNINKV----PVATKVSISRVGSWNNSQKLYQNIIFNNLkifflskkrilqigdllpitfdsnfalllnDTNDDDHDDDDDGdDG 395
                 55555555555..3444444....37899999********************9******************************7666666644433222 PP

      ANAPC9 100 ak 101
                 a+
  CCD25913.2 396 AD 397
                 22 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.97
      ANAPC9  24 eessskfvlrkpaklskYDysvftnkkt 51 
                 + s+skf+   +  lskY y+ f+n   
  CCD25913.2 441 KLSTSKFIKYPKLPLSKYEYKRFFNLPS 468
                 445667888888899*********9765 PP

>> Parvo_NS1  Parvovirus non-structural protein NS1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.8   3.7e+03      45      85 ..     557     595 ..     556     600 .. 0.78
   2 !   17.6   0.0   2.1e-06    0.0016     111     138 ..     794     821 ..     786     824 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4.8
   Parvo_NS1  45 rrqienaleqakirmfstkaaldilakkevtadfdieenri 85 
                 r +ien+l+  + ++ +  +++ il k +++   d e++++
  CCD25913.2 557 RAKIENVLSYTTSTIITLSNLEYILSKTDPN--QDPESTKL 595
                 5789999999999999999999999988888..66666555 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 2.1e-06
   Parvo_NS1 111 lgkrntvwfyGpantGktnlaeaIakav 138
                 + kr  ++fyGp+ tGkt +a+aIa  +
  CCD25913.2 794 MKKRSGILFYGPPGTGKTLMAKAIASNF 821
                 57999********************876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00015      0.11      25      49 ..     798     822 ..     787     838 .. 0.80
   2 ?    3.5   0.0       0.1        82     124     147 ..     846     868 ..     840     905 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 0.00015
      AAA_16  25 elvllsGesGvGKsslvrellrale 49 
                 + +l++G++G+GK+ ++++++  ++
  CCD25913.2 798 SGILFYGPPGTGKTLMAKAIASNFS 822
                 789**************99987665 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.1
      AAA_16 124 krllallsrderplvlvlDdlqwa 147
                 ++ +++++  ++p v+++D+++ +
  CCD25913.2 846 RKVFQRARD-AKPCVIFFDEIDSV 868
                 455677777.***********954 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     6e-06    0.0047      21     108 ..     785     864 ..     772     873 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 6e-06
       AAA_7  21 rysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdiiesklekrrkgvygPpggkklvvFvDD 108
                 r   l+ + +k++  +l++Gp GtGKt+++k + ++++        +nf +   ++ l   i ++    rk    +   k +v+F D+
  CCD25913.2 785 RHPELFATGMKKRSGILFYGPPGTGKTLMAKAIASNFS--------LNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVIFFDE 864
                 6666888999**********************999988........555555555555555555555555444455555556666555 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.5e-05     0.012       1      48 [.     800     850 ..     800     901 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 1.5e-05
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...klkkkdsvysrnpeddfwdgYt 48 
                   i++yGp+g+GK+++ak +a++++ ++   k ++  ++y++++e ++ + ++
    CCD25913.2 800 ILFYGPPGTGKTLMAKAIASNFSLNFfsvKGPELLNMYIGESEANVRKVFQ 850
                   789*****************9996666667777777787777766544444 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.5e-05     0.019       2      78 ..     800     869 ..     799     920 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.5e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG-- CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEverae 78 
                 +l  GppGtgK+ +a+ +a+ +  +++ v +++      l+  +   ++ ++ v +++   ar  +++++++DE++ + 
  CCD25913.2 800 ILFYGPPGTGKTLMAKAIASNFSLNFFSVKGPE------LLNMYI--GESEANVRKVFQ-RARdaKPCVIFFDEIDSVA 869
                 7899******************99999999988......333333..233333444444.4444788888888888665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       2.4   1.8e+03      16      65 ..     514     557 ..     511     622 .. 0.68
   2 !   13.0   0.0   0.00012     0.093       4      30 ..     796     822 ..     793     853 .. 0.76
   3 ?   -1.1   0.0       2.7   2.1e+03      84     104 ..     850     869 ..     832     911 .. 0.70

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 2.4
      AAA_22  16 tGKTtllrrlleqldeeakaeeerpevvfvtlpsst.......sskdllrellralg 65 
                 +GK tl++  +++l         + ++++++++s+        s     +++l  + 
  CCD25913.2 514 VGKKTLVKHTADWL---------GFHLLEIDCSSLPlnngsldS----TNKILGSIR 557
                 89999999999999.........999999999988776533333....333333333 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00012
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqld 30 
                 +++ ++ +G++GtGKT+ ++ +++++ 
  CCD25913.2 796 KRSGILFYGPPGTGKTLMAKAIASNFS 822
                 6677899**************999874 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 2.7
      AAA_22  84 qalraravielliiDEaqhlr 104
                 q +r+++ + ++  DE++ + 
  CCD25913.2 850 QRARDAK-PCVIFFDEIDSVA 869
                 3334444.48*******9986 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       9.9   7.7e+03      93     117 ..     697     721 ..     639     731 .. 0.55
   2 ?   13.1   0.0   0.00013       0.1       1      35 [.     800     832 ..     800     901 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 9.9
      AAA_18  93 dikkvvLtaspeelleRlekRgyee 117
                  ik +v ta+++ l++R e+ ++ +
  CCD25913.2 697 AIKSIVQTAKYKALKDRQEEENTDT 721
                 2333666777777777777766655 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00013
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvaken 35 
                 Il  G+pG+GKt +ak++++    + n  +v   +
  CCD25913.2 800 ILFYGPPGTGKTLMAKAIASNF--SLNFFSVKGPE 832
                 8999**************9986..44444443322 PP

>> ATPase  KaiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.2e-05     0.041      10      38 ..     788     816 ..     774     847 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.2e-05
      ATPase  10 eilkgGipegrvvlitGepGtGKtifalq 38 
                 e++  G+ +++ +l +G pGtGKt++a+ 
  CCD25913.2 788 ELFATGMKKRSGILFYGPPGTGKTLMAKA 816
                 57779*********************975 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   4.9e-05     0.038      52     100 ..     799     845 ..     791     856 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.9e-05
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  52 avLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevlt 100
                 ++L+ Gp+gtGkt +a ai+ +++  + f +++g e+  + +  +e+ +
  CCD25913.2 799 GILFYGPPGTGKTLMAKAIASNFS--LNFFSVKGPELLNMYIGESEANV 845
                 79*******************998..99********9999999988744 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   5.1e-05     0.039      45      70 ..     795     820 ..     789     865 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 5.1e-05
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgve 70 
                 +k+ +i++ Gp+G+GK+ +a a++ +
  CCD25913.2 795 KKRSGILFYGPPGTGKTLMAKAIASN 820
                 67899***************999865 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       8.2   6.4e+03      13      45 ..     514     543 ..     513     571 .. 0.69
   2 ?   12.5   0.0   0.00014      0.11       6      76 ..     801     868 ..     796     905 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.2
      AAA_14  13 vGKTtllkqlikellvkkesilyinldderdkk 45 
                 vGK tl+k+ ++ l     + l+i++ + ++ +
  CCD25913.2 514 VGKKTLVKHTADWLG---FHLLEIDCSSLPLNN 543
                 899999999997666...788888888877654 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00014
      AAA_14   6 vitGaRrvGKTtllkqlikellvkkesilyinldderdkk..ladpekllelileklkeekktylflDEiqev 76 
                 +  G+  +GKT ++k ++++         +++++ +++ +  + ++e + + +++++++ k  ++f+DEi  v
  CCD25913.2 801 LFYGPPGTGKTLMAKAIASNFS-----LNFFSVKGPELLNmyIGESEANVRKVFQRARDAKPCVIFFDEIDSV 868
                 6689999******999997666.....5556666655544114455555555555555568999******877 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   6.1e-05     0.047      25      43 ..     800     818 ..     788     824 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.1e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrlp 43 
                   +l++GppG+GKt++ak+++
    CCD25913.2 800 ILFYGPPGTGKTLMAKAIA 818
                   89**************987 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       5.8   4.5e+03      29      46 ..     513     530 ..     488     538 .. 0.80
   2 ?   11.1   0.0   0.00037      0.29      19      51 ..     797     831 ..     780     846 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 5.8
                 TSSHHHHHHHHHHHTT-- CS
        TsaE  29 GaGKTtlvrglakalgve 46 
                  +GK tlv++ a  lg++
  CCD25913.2 513 NVGKKTLVKHTADWLGFH 530
                 57********99999876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00037
                 TEEEEEEESTTSSHHHHHHHHHHHTT--..----T CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalgve..evkSP 51 
                 ++ il++G+ G+GKT +++++a+++ ++  +vk P
  CCD25913.2 797 RSGILFYGPPGTGKTLMAKAIASNFSLNffSVKGP 831
                 4459*********************9988889988 PP

>> RNA_pol_Rpb4  RNA polymerase Rpb4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0    0.0019       1.5      66      95 ..     343     372 ..     293     390 .. 0.85
   2 ?    0.2   0.1       1.1   8.7e+02      42      73 ..     570     611 ..     548     635 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0019
                   HHHHHHHTTSTSTHHHHHHHHHCSTSSHHH CS
  RNA_pol_Rpb4  66 nelvellksfeLtkaEklqlvnlkPesave 95 
                   n +++ lk f L k+ +lq+++l+P++++ 
    CCD25913.2 343 NIIFNNLKIFFLSKKRILQIGDLLPITFDS 372
                   56788999999***************9985 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.1
                   CHHHHHHHHHHHCTHHTTSSHHH..........HHHHHHHHT CS
  RNA_pol_Rpb4  42 nkilkktleyltnkfsrlkneek..........fnelvellk 73 
                   + i+  +ley+  k  +++++e+          +ne+++++ 
    CCD25913.2 570 TIITLSNLEYILSKTDPNQDPEStklsqtmdlgINEIINHFT 611
                   556777899998889999999998899999999888888876 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.3     1e+03       3      31 ..     507     535 ..     505     541 .. 0.83
   2 ?    9.5   0.0    0.0011      0.85       2      37 ..     800     834 ..     799     873 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.3
       AAA_3   3 llegvPGlaktllvkalakaldlefkriq 31 
                 l  + P ++k +lvk+ a+ l+ ++  i 
  CCD25913.2 507 LYSNHPNVGKKTLVKHTADWLGFHLLEID 535
                 56789**************9998877665 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0011
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdll 37 
                 +l+ g PG++ktl++ka+a+ ++l+f  ++  p+ll
  CCD25913.2 800 ILFYGPPGTGKTLMAKAIASNFSLNFFSVK-GPELL 834
                 678899******************998876.45555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00089      0.69      13      55 ..     778     819 ..     770     856 .. 0.80
   2 ?   -2.3   0.0       3.5   2.7e+03     128     172 ..     843     889 ..     822     891 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00089
      AAA_25  13 adlaapppprrwlvkgllpagelallaGapgtGKttlaldlal 55 
                 + ++ p+++++    g+  + + +l++G+pgtGKt +a  +a 
  CCD25913.2 778 DTIDMPLRHPELFATGM-KKRSGILFYGPPGTGKTLMAKAIAS 819
                 55666777777777777.788999*************987776 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 3.5
      AAA_25 128 advdaleaaieevegvrlvviDplsralgg.densnsd.v.galveal 172
                 a v+++ +++++ +++ ++ +D ++++ +  +++ +s  v +++v++l
  CCD25913.2 843 ANVRKVFQRARD-AKPCVIFFDEIDSVAPKrGNQGDSGgVmDRIVSQL 889
                 567788888888.67999*******99998633333333458888876 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.6      0.36   2.8e+02      44     116 ..     606     691 ..     603     754 .. 0.70
   2 ?    7.1   0.0    0.0063       4.9      22      50 ..     795     823 ..     768     835 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.36
                 HHHHH-S.....-EEEEESSHHHHHHHH...HHGGGGTGG..............GEEEESSS-B--.......-SEEEEEHHHHHH CS
      ResIII  44 lierllkkgkeekflflvprkslleqtl...eefkkflseayke..........igkkvsgdkkkakekdstnkkilvttiqslda 116
                 +i ++++++k   f+++ +++++l q +    +f+ +++ ++++          +++ ++++k+k++ k++ ++++ v++    +a
  CCD25913.2 606 IINHFTTNFKGVVFIIIMNNIDILPQNIrtkLKFEYLIPVPNEDqrlaifqwylTQEQLNNQKNKNSYKFKLSNNVNVSNLALHSA 691
                 7778888888889999********99775556777777777666778887777766667777776667777777777777644333 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0063
                 .TTSEEEEEESTTSTHHHHHHHHHHHH-S CS
      ResIII  22 krdkrglikmaTGtGKTlvaaklierllk 50 
                 k++  +l+  + GtGKTl+a +++ +++ 
  CCD25913.2 795 KKRSGILFYGPPGTGKTLMAKAIASNFSL 823
                 6778899************9999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1031  (0.0575046); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.89u 0.31s 00:00:01.20 Elapsed: 00:00:00.48
# Mc/sec: 6669.16
//
Query:       CCD25914.2  [L=210]
Description: hypothetical protein NDAI_0G01380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-17   63.4   0.0    3.2e-17   63.0   0.0    1.2  1  Sld5      GINS complex protein


Domain annotation for each model (and alignments):
>> Sld5  GINS complex protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   1.8e-21   3.2e-17       2      94 ..      45     175 ..      44     190 .. 0.84

  Alignments for each domain:
  == domain 1  score: 63.0 bits;  conditional E-value: 1.8e-21
                 EEEHHHHHHHH...............HTTSCCCHHCHHHCHHHHHHCCCHHTTSSSSTTTTTTHHHHHHHHHHHHT.HCHHHHHHHHHHHHHHHHHHHT CS
        Sld5   2 eLPlWlaelLk...............rqrrveieppewlspesleailedetkssdlpslpphflelavkllelardldelkrllrdllevRlakirkf 85 
                 +LP+Wla++L+                 ++ve++ p+++sp++++ai++d+ +  dl++++ +f+ la+k++ l+ d ++l++++ +ll  R++ i+k+
  CCD25914.2  45 DLPIWLARILAivggdanpdtmedeePLPFVELLTPDMFSPKVINAIKADPASL-DLHAINSYFYSLATKWITLFND-KQLAEVVHNLLLERSQIINKY 141
                 7***********************8888**************************.**********************.********************* PP

                 HCHHHHHH.........................H CS
        Sld5  86 aenledaa.........................g 94 
                 a ++  ++                          
  CCD25914.2 142 AGSVPVDLfhsstdigsgkktghsshggnssmvR 175
                 9877776666666666666665555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       542  (0.0302304); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1582.93
//
Query:       CCD25915.2  [L=258]
Description: hypothetical protein NDAI_0G01390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-54  182.8   5.3    7.1e-54  182.6   5.3    1.0  1  PEX11     Peroxisomal biogenesis factor 11 (PEX11)


Domain annotation for each model (and alignments):
>> PEX11  Peroxisomal biogenesis factor 11 (PEX11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.6   5.3   3.9e-58   7.1e-54       2     223 .]      29     254 ..      28     254 .. 0.92

  Alignments for each domain:
  == domain 1  score: 182.6 bits;  conditional E-value: 3.9e-58
       PEX11   2 dklvkflaqtqgrDKllRalqYasrllayllerkgsskelvkklkklesqfslsRKllRlgkflehlqaaaklldnkle.dpvlrllavlrnlgyalYl 99 
                 ++l+kf+++++gr+K+lR+lqY++r+la   +   + + +  + k+le qf l+RK+lR++k+l+ + aa+k++dnkl  d+++r++++ +n+++alYl
  CCD25915.2  29 TRLIKFFDTSSGREKILRLLQYLCRFLAL--Q---DDNLATSPKKRLELQFLLIRKVLRFLKPLNFIRAASKAYDNKLTsDSLVRYCKIWKNVAFALYL 122
                 789************************55..3...3577778889******************************99999******************* PP

       PEX11 100 llDhvlwlkklgllkvknak..klsrlssrfwlfglvlslvrdlyelrllqekekklkkekkekeereeek.......laavlkkrpallldlvknllD 189
                 +lD++++l++l+l++ +      ++++++ +wl++l+ ++v d++++++ q  + ++k+++ ek++++e +       la  +++r ++ ++l+++ lD
  CCD25915.2 123 ALDQINLLHMLNLIPLTRFVtqTIPHWTNLAWLLSLFIGIVLDTRKVQIAQTCIYHVKHRS-EKDKQNELDgdedkkvLASARRERSMATRKLLWDILD 220
                 ***************9998778*****************************9999888764.33333333345677899******************** PP

       PEX11 190 llialnelgilklsdgvvGlaGliSSllgllqlw 223
                  li+l++l+++k++dg++ laG+++Sl+gl++lw
  CCD25915.2 221 SLIVLKNLSYIKTNDGYISLAGITTSLMGLQDLW 254
                 *********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       729  (0.0406604); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1864.52
//
Query:       CCD25916.2  [L=683]
Description: hypothetical protein NDAI_0G01400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-08   34.5   0.0     0.0087   16.7   0.0    2.6  2  dsrm             Double-stranded RNA binding motif
    0.00044   19.1   9.2    0.00079   18.3   9.2    1.4  1  Presenilin       Presenilin
    0.00097   20.0   4.0    0.00097   20.0   4.0    4.0  4  PRCC             Mitotic checkpoint regulator, MAD2B-interact
  ------ inclusion threshold ------
      0.013   13.7  25.1       0.02   13.1  25.1    1.2  1  Nop14            Nop14-like family
      0.038   12.7  11.4      0.071   11.9  11.4    1.4  1  Raftlin          Raftlin
      0.084   13.5   0.0      0.084   13.5   0.0    3.0  2  Ribonuclease_3   Ribonuclease III domain
       0.52    9.7  26.8          1    8.7  26.8    1.4  1  CobT             Cobalamin biosynthesis protein CobT
        2.3    7.6  35.6      0.013   14.9  26.5    1.8  2  SDA1             SDA1
        2.6    6.3   5.6        3.8    5.8   5.6    1.2  1  SID-1_RNA_chan   dsRNA-gated channel SID-1
        2.7    6.4  13.4        4.8    5.6  13.4    1.4  1  RRN3             RNA polymerase I specific transcription init
        3.8    7.4  27.1        7.1    6.5  27.1    1.4  1  TFIIA            Transcription factor IIA, alpha/beta subunit
        4.8    6.3   9.5        7.5    5.7   9.5    1.2  1  Zip              ZIP Zinc transporter
        6.1    6.5  29.0      0.068   12.9  21.2    1.7  2  Cwf_Cwc_15       Cwf15/Cwc15 cell cycle control protein


Domain annotation for each model (and alignments):
>> dsrm  Double-stranded RNA binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.2e-05     0.031       1      65 [.     245     305 ..     245     306 .. 0.88
   2 !   16.7   0.0   6.3e-06    0.0087      37      65 ..     641     671 ..     620     672 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.2e-05
                 HHHHHHHHHHHTTSEEEEEEEEEESSTSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHH CS
        dsrm   1 pKskLqeycqkkgkppnyeyvseegpphslpkFvvtvkvngklygsGvgsnKKeAeqsAAedale 65 
                 pK  L e+++ ++ +++ ++++ +++      F+++vk+++   g+G+ +    Aeq+AA+dal 
  CCD25916.2 245 PKEALIEFMKDNKDGLKLRFIRLTVN----SPFIIEVKLGNVSLGKGEDNVIEIAEQKAAQDALS 305
                 68888888888888888888877777....47*****************999***********97 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 6.3e-06
                 EEETTEEEE..EEEESSHHHHHHHHHHHHHH CS
        dsrm  37 vkvngklyg..sGvgsnKKeAeqsAAedale 65 
                 +++ g+ ++  +G gsnK+ ++q AAe+a+e
  CCD25916.2 641 CILRGTAIIlgEGRGSNKQISQQIAAEHAIE 671
                 556554444339999**************97 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   9.2   5.8e-07   0.00079     238     317 ..     492     567 ..     440     650 .. 0.48

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 5.8e-07
  Presenilin 238 eeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessesseeeeeeeeeeeeses 317
                 +++++++ + +ses++eee+e+e++++s++++ese+ese+es+++++s++es++e+ese++s+s++    eee+++ese+
  CCD25916.2 492 SKSNKTAVQVESESEEEEETETETETESETETESESESESESESESESESESESESESESDSDSES----EEESDNESED 567
                 111222222222222222222222222222221111111111111111111111111111111111....1111111111 PP

>> PRCC  Mitotic checkpoint regulator, MAD2B-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.6     5e+03     133     153 ..     162     182 ..       6     200 .. 0.57
   2 ?   -1.1   7.8         2   2.7e+03      13      85 ..     375     448 ..     368     469 .. 0.70
   3 ?    0.4  16.9      0.67   9.3e+02      12      82 ..     472     543 ..     466     549 .. 0.53
   4 !   20.0   4.0     7e-07   0.00097      10     121 ..     522     679 ..     517     682 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.6
        PRCC 133 ikeakiieinedeelkaneqw 153
                  +++k +e   d+ l+++++w
  CCD25916.2 162 NANKKGLENLHDQILNDKQDW 182
                 333444555555556666666 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
        PRCC  13 ssaaaksaptisyeplvssapeaeeseeedppetepepasqpeaenadleakkaakssea.mvpepteqdp..vke 85 
                 ++   ++   ++ +p+++++ ++ee+++ +pp+++++p+ +p a+ ++  +  aa  s+      pt  +p    +
  CCD25916.2 375 KEVKIEPRDIEKQSPIITKPIKKEEKQTVQPPAPAKKPEMKPVAAVKSAPNPVAATVSTEpS--APTSLNPddLLK 448
                 55555566667889*********************999999999999888887776665544..444444433333 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.67
        PRCC  12 sssaaaksaptisyeplvssapeaeeseeedppetepepasqpeaenadleakkaakssea.mvpepteqdp 82 
                 +s+  +++a+ti+++pl s+ ++++++ + +++ +e+e +++++++++++e++++++s++  ++++++e+++
  CCD25916.2 472 KSELVPATASTIPSIPLNSASKSNKTAVQVESESEEEEETETETETESETETESESESESEsESESESESES 543
                 566667788888888888888877766665555555555555554444444444444333322222222222 PP

  == domain 4  score: 20.0 bits;  conditional E-value: 7e-07
        PRCC  10 assssaaaksaptisyeplvssapeaeeseeedppetepepasqpeaenadleakkaakssea..mvpepteqdpvkensknypgyyllpsg....... 99 
                 +++s+++   ++++s++ + s+ ++++ese e++ ++e+e +s+ e+e++++e k ++ +s+   m p++ ++d   ++ ++  ++++++s        
  CCD25916.2 522 ETESESE---SESESESESESESESESESESESDSDSESEEESDNESEDEEPELKIEPPQSKVpvMIPSKITKDDSGQYLYTDVEVECDKSSkaslyai 617
                 2222222...2333333444445555555555666666666667777777777777777777788********99999999999999999999****** PP

        PRCC 100 ........................................sqqpqedasdlnlddealrqLl 121
                                                         +q +q++a++ ++++eal++Ll
  CCD25916.2 618 lgkvnlfpeyktsqidmndfysfcilrgtaiilgegrgsnKQISQQIAAEHAIEGEALAELL 679
                 *************************************996444455999********99997 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1  25.1   1.5e-05      0.02     343     410 ..     502     570 ..     448     610 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.5e-05
       Nop14 343 taeeeeeededdfeedddlveseseeee.eeeeedeeeeedeeeeeeeeededdlsdleseeeeeedel 410
                 ++e+eeee+ + ++e +++ e+ese+e+ +e+e+++e+e+++e+e+e+e+d+d++s++es++e+e++e 
  CCD25916.2 502 ESESEEEEETETETETESETETESESESeSESESESESESESESESESESDSDSESEEESDNESEDEEP 570
                 121122222222223333333333333322222222222222222234444444444443333333332 PP

>> Raftlin  Raftlin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  11.4   5.1e-05     0.071     135     302 ..     441     609 ..     425     620 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 5.1e-05
     Raftlin 135 ladqkiikelikkvqeaasrGlkFvg..vipqyasqsksansssltsgaaeseeardekkkrsssedkvslenekpgalsgksseagaeeeaeseegkk 231
                 l+ ++ +ke+++++q+  s+ +  v+  +i++ +  + +a++ ++ + ++ s++++++ + +s+se++ ++e+e +++ s +++e+++e e+ese++++
  CCD25916.2 441 LNPDDLLKEIMNRMQSQVSEMVAKVAsdLITKSELVPATASTIPSIPLNSASKSNKTAVQVESESEEEEETETE-TETESETETESESESESESESESE 538
                 55677788888888887777665554224555555555555555544444455445555555555555544444.333444444444444444444444 PP

     Raftlin 232 gegpaaeqlqlssaeeegsespskskkgeeelsktedklskklelfalFnkpkseqkcrqYyevtlslrvs 302
                 +e+++ ++ ++ s +++ se +s +++ +ee +   ++ ++k+ + +  + +k+++    Y +v ++   s
  CCD25916.2 539 SESESESESESESDSDSESEEESDNESEDEEPELKIEPPQSKVPVMIPSKITKDDSGQYLYTDVEVECDKS 609
                 44443222222222222222222333333334444457778888888878888888777777777766555 PP

>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       4.4   6.1e+03      84     101 ..      58      81 ..      10      85 .. 0.57
   2 ?   13.5   0.0   6.1e-05     0.084       2      41 ..     139     178 ..     138     184 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.4
                     C......TSHHHHHHHHHHHHHHH CS
  Ribonuclease_3  84 d......adkvladvvEAliGaiy 101
                            ++k +a+   ++iG ++
      CCD25916.2  58 MvndgtaQEKLIASSPASFIGTYL 81 
                     023333367777777777777776 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 6.1e-05
                     HHHHHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHTSH CS
  Ribonuclease_3   2 rLeflGDavlklaittylfetypdahegrlsklrsklvsn 41 
                     rLe+lG   ++ +i+  lf+++p+a+++ l +l  ++++ 
      CCD25916.2 139 RLEYLGANWMNALISIVLFNQFPNANKKGLENLHDQILND 178
                     9********************************9999886 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  26.8   0.00072         1     207     270 ..     503     565 ..     443     571 .. 0.40

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00072
        CobT 207 saeepeeedeeeeedeeeeeeeseeeeeegedddkeeqeeaaseeeeeededeesketeaaeaa 270
                 s+ e+eee e e e+e+e+e ese+e+e++ ++++e+++e++se+e+e+d+d +++e+e+++++
  CCD25916.2 503 SESEEEEETETETETESETETESESESESESESESESESESESESESESDSD-SESEEESDNES 565
                 1111111111111222222222222222222222222222222222222223.22222222222 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   1.6       4.8   6.6e+03     229     266 ..     342     388 ..     290     415 .. 0.54
   2 ?   14.9  26.5   9.5e-06     0.013      67     172 ..     480     573 ..     473     623 .. 0.48

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 4.8
        SDA1 229 kkqlesakrkkkkkkdeee...........eeaeksedlvtasdiegla 266
                 k+++++++   ++ ++  +            ++ k+e  ++++die+  
  CCD25916.2 342 KQEIGKNETLTENPTE--KpitkpiakplaTKEAKKEVKIEPRDIEKQS 388
                 3333333322222111..1234444444432333334444455555443 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 9.5e-06
        SDA1  67 aegieGleLlekwkeeekkekreeeeedsddeddeedwevesdddseedseggwidvesdeeeieesdesedeeeeeeeeeekeekeeeeeeeeeeeee 165
                 a+ i+ + L    k+++ + +   e+e++++e+ e+++e+es++++e++se +     s++e  +es+ se+e+e+e+e+e++ + e+eee++  +e+e
  CCD25916.2 480 ASTIPSIPLNSASKSNKTAVQV--ESESEEEEETETETETESETETESESESE-----SESE--SESE-SESESESESESESDSDSESEEESD--NESE 566
                 5677777777777777776665..33332233333333333322222222222.....2222..1111.222222222222222222222222..3344 PP

        SDA1 166 eeeeeee 172
                 +ee e +
  CCD25916.2 567 DEEPELK 573
                 4444433 PP

>> SID-1_RNA_chan  dsRNA-gated channel SID-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.6    0.0027       3.8     148     196 ..     499     560 ..     427     605 .. 0.50

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0027
  SID-1_RNA_chan 148 e...............sseekrvkessssesaseslesvssavrsesessveeesdydtleeie 196
                                     +  e++ +++++ses+ses+++ +s+ +seses++e+esd d+ +e e
      CCD25916.2 499 VqveseseeeeeteteT--ETESETETESESESESESESESESESESESESESESDSDSESEEE 560
                     12222333333322110..111111111122222222222222333333333333333333333 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  13.4    0.0035       4.8     211     263 ..     499     559 ..     434     584 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0035
        RRN3 211 Veiqveledlddeedeeleeelee...........deddedddedd...............eesdlddlssdeeaeede 263
                 V+++ e e+ ++ e+e++ e+  e           +         +               +       +sd++ e++e
  CCD25916.2 499 VQVESESEEEEETETETETES--EtetesesesesE---------SeseseseseseseseS-------ESDSDSESEE 559
                 444444444444444333333..2234544433320.........12222222222221111.......1111111111 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  27.1    0.0051       7.1     148     371 ..     339     567 ..     286     578 .. 0.39

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0051
       TFIIA 148 asgaqqiaaqplqqvvqq.sqgsaaqssvaalqaqsqqaqalaepqqqlekqqqq.qqqqqqqqqqqqvqqqqqeesqqaqqasqe.....qvagsqve 239
                 a+ +q+i ++   +   + +++++++  +++l+ ++ + ++ +ep    +  q++ ++++ ++ ++q+vq    +  ++++    +     + a++ v+
  CCD25916.2 339 APIKQEIGKNETLTE--NpTEKPITKPIAKPLATKEAKKEVKIEPRDIEK--QSPiITKPIKKEEKQTVQPPAPA--KKPEM---KpvaavKSAPNPVA 428
                 333333333333333..135556666666666666666666666666632..44423333333333344433332..11111...11111222222332 PP

       TFIIA 240 ssqtdgaedaleeespvlegelsaeeeagaqkeelsreeidri.re...................ealkakelekeskkkkraeessladlseilqlDG 318
                 ++   +++  ++ +++ l  e++++ +++  +e + ++  d i ++                   +                       + ++ +q+  
  CCD25916.2 429 ATVSTEPSAPTSLNPDDLLKEIMNRMQSQV-SEMVAKVASDLItKSelvpatastipsiplnsasK-----------------------SNKTAVQVES 503
                 333333322222222223444444443333.45556666666633355666666665555443320.......................2222222222 PP

       TFIIA 319 agddsde..........eeeeeesdedsdsessdd.edeqveEDplNSdDDvddeddddlfdtd 371
                 + ++++e           e+e+es+++s+ses+ + e e + E    Sd D+++e+++d + +d
  CCD25916.2 504 ESEEEEEteteteteseTETESESESESESESESEsESESESESESESDSDSESEEESDNESED 567
                 2222222222222211111111111111111111111111223333344222222222212222 PP

>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   9.5    0.0054       7.5     108     172 ..     495     559 ..     461     618 .. 0.59

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0054
         Zip 108 ektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqase 172
                 +kt  + +s+s+e++  ++  + ++e+++e+e++ +++ ++++++e+++++++e++++++++++e
  CCD25916.2 495 NKTAVQVESESEEEEETETETETESETETESESESESESESESESESESESESESESDSDSESEE 559
                 34444444444444444444444444444433333333333333333333333322222222221 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.9       5.5   7.5e+03      60      69 ..     370     379 ..     326     414 .. 0.50
   2 ?   12.9  21.2   4.9e-05     0.068      70     150 ..     494     573 ..     436     578 .. 0.49

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.5
                 HHHHHHHHHH CS
  Cwf_Cwc_15  60 eaeaeakakk 69 
                 ++ea+++ k 
  CCD25916.2 370 TKEAKKEVKI 379
                 2222222222 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 4.9e-05
                 H-------------------------------------..-----------------.------------------------ CS
  Cwf_Cwc_15  70 rkkaeleaeeeeekekkeeeeeeeeeeakrrkeelleeareidaddedseeeeeeee.eesdddsdsdsdddddedetaeLl 150
                 ++k++ + e+e+e+e+++e+e+e+e+e++ ++e+  e+++e ++++e+++  e+e+e e+++d+++++++d+++ede+ eL 
  CCD25916.2 494 SNKTAVQVESESEEEEETETETETESETETESESESESESESESESESES--ESESEsESDSDSESEEESDNESEDEEPELK 573
                 11112222111122222222222122222222112222223333333332..222221333333334444444588888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2014  (0.112332); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                       243  (0.0135535); expected 17.9 (0.001)
Passed Fwd filter:                        81  (0.00451782); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 1.39u 0.35s 00:00:01.73 Elapsed: 00:00:00.54
# Mc/sec: 3777.23
//
Query:       CCD25917.2  [L=217]
Description: hypothetical protein NDAI_0G01410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-23   83.0  14.8    2.3e-23   83.0  14.8    1.5  2  SLX9      Ribosome biogenesis protein SLX9


Domain annotation for each model (and alignments):
>> SLX9  Ribosome biogenesis protein SLX9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3      0.59   1.1e+04      15      23 ..       7      15 ..       3      28 .. 0.39
   2 !   83.0  14.8   1.3e-27   2.3e-23       2     130 ..      56     214 ..      55     215 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.59
        SLX9 15 eaflsKiek 23
                + + +K ++
  CCD25917.2  7 NTLRNKASQ 15
                222222222 PP

  == domain 2  score: 83.0 bits;  conditional E-value: 1.3e-27
        SLX9   2 fklsKkdKrkiKheaflsKiek..........sisksaskkkkkrkrrpskklvtdlesLadaLpdleeeegekkekkekeqaqqgkvkkae....... 83 
                  ++sKkdK+++K+ +flsK+++          +isks+ +++k++ r   ++l++++e+L ++L + ++ ++  +++++++ +++g     +       
  CCD25917.2  56 ARESKKDKQLNKQLSFLSKMKSkstgkesnfdGISKSSIRRRKRKLR---DDLKPKMEDLLTSLAQEQDLKEHVRNNQRQRDDRRG-----Hdvlcqpk 146
                 689********************************************...***************776333322222222222222.....22445577 PP

        SLX9  84 .....................kslkskpgalkrkkklekkEmerfkkvLahpsfksnpfaaLrehisn 130
                                      k+++++++++k++k+l + E++rf++vL++++f++npfa Lre i++
  CCD25917.2 147 llnllsmrnytnmnepgsviiKKNQPNIRNQKGAKALSQLESKRFTQVLTNQTFQQNPFASLREIIKM 214
                 9******************999********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1203  (0.067098); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1509.68
//
Query:       CCD25918.2  [L=190]
Description: hypothetical protein NDAI_0G01420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-35  120.8   0.8    4.8e-35  120.5   0.8    1.1  1  MAS20            MAS20 protein import receptor
  ------ inclusion threshold ------
      0.034   13.3   0.0       0.33   10.1   0.0    2.0  2  Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransfera
       0.16   12.2   0.1       0.38   11.0   0.0    1.7  2  Pox_A14          Poxvirus virion envelope protein A14
       0.29   11.2   2.1       0.63   10.2   2.1    1.6  1  RAMP4            Ribosome associated membrane protein RAMP4


Domain annotation for each model (and alignments):
>> MAS20  MAS20 protein import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.8   1.1e-38   4.8e-35       4     128 ..      18     150 ..      14     151 .. 0.89

  Alignments for each domain:
  == domain 1  score: 120.5 bits;  conditional E-value: 1.1e-38
       MAS20   4 aaaaflgYcvYFDrkRrsdpefkkklrerrkkqakaakeeeeaekaekkk..kealeeakee..lptdaeevekfFleevqlGEellaq....geeeea 94 
                  a++ +gY++YFD++Rr++++f+k+l+ + kkq+k++k +ee+e++e+ +  +++l e+ ++  +  +++++e++F++ ++ GE l+++    +++  a
  CCD25918.2  18 GALSATGYIIYFDYQRRNNAQFRKNLKTNLKKQQKETKLKEEKEAKENLSkvSTFLIEELKKnpIDPTPSKREEIFTSSLEEGELLATKakneNDQLLA 116
                 56889*******************************999999999999888955665555553777999*******************9887777888* PP

       MAS20  95 aehlynAlkvcpqPqeLlqilqktlPeevfelll 128
                 a+++y+Al+v+p+P+eLl+i+qktlP +v++ ++
  CCD25918.2 117 ASKFYRALSVYPNPSELLEIYQKTLPSSVYNFVV 150
                 ******************************9886 PP

>> Lip_A_acyltrans  Bacterial lipid A biosynthesis acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.035   1.6e+02      47      89 ..      30      75 ..       7     117 .. 0.66
   2 ?   10.1   0.0   7.4e-05      0.33      17      59 ..     144     186 ..     131     186 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.035
  Lip_A_acyltrans 47 kflkrrrkiarkNLalvfpekseaer...ekiidksfesvgraive 89
                       + r +++ rkNL+  + ++ ++ +   ek +++++ +v  +++e
       CCD25918.2 30 DYQRRNNAQFRKNLKTNLKKQQKETKlkeEKEAKENLSKVSTFLIE 75
                     3445666777888888777655554422244556666666666555 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 7.4e-05
  Lip_A_acyltrans  17 wlgiavllllallPesvlrkilkglgrlaakflkrrrkiarkN 59 
                      +++++v+l++a+lP s ++ +l+glg ++  ++++ ++ a  N
       CCD25918.2 144 SVYNFVVLMIAILPPSNVSSFLNGLGEKMNDLKNQAETLAEIN 186
                      7899**************************8877766666655 PP

>> Pox_A14  Poxvirus virion envelope protein A14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.4e-05      0.38      40      82 ..       4      46 ..       1      57 [. 0.74
   2 ?   -3.0   0.0       1.9   8.4e+03      48      60 ..     144     156 ..     139     158 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 8.4e-05
     Pox_A14 40 tdkawralsivsFilgivillglllfsmygrkCkat.sskvvee 82
                t  ++rals v+ ++g+++  g +++  y+r+ +a+  ++  ++
  CCD25918.2  4 TSPILRALSAVT-VIGALSATGYIIYFDYQRRNNAQfRKNLKTN 46
                56699******9.56899999**********9988855554444 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.9
     Pox_A14  48 sivsFilgivill 60 
                 s+  F++ ++++l
  CCD25918.2 144 SVYNFVVLMIAIL 156
                 5666777777665 PP

>> RAMP4  Ribosome associated membrane protein RAMP4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.1   0.00014      0.63       6      41 ..      32      71 ..      30      75 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00014
       RAMP4  6 mrrknekfakni.tkrGkvpkslk...kkekkspvgpwlL 41
                +rr n++f kn  t+  k +k++k   +ke k +++ +  
  CCD25918.2 32 QRRNNAQFRKNLkTNLKKQQKETKlkeEKEAKENLSKVST 71
                89*********98888888888887576667777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2400  (0.133861); expected 358.6 (0.02)
Passed bias filter:                      908  (0.0506442); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 1471.86
//
Query:       CCD25919.2  [L=681]
Description: hypothetical protein NDAI_0G01430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.3e-104  349.4   0.3   1.3e-104  349.4   0.3    1.9  2  IF-2B            Initiation factor 2 subunit family
  ------ inclusion threshold ------
      0.018   14.9   4.4        1.7    8.4   2.6    2.4  2  Methyltransf_14  C-methyltransferase C-terminal domain
      0.025   14.0  22.5       0.13   11.6   0.1    3.2  3  NBP1             Fungal Nap binding protein NBP1
        3.4    7.5  30.0       0.37   10.7  17.2    2.3  2  eIF3_subunit     Translation initiation factor eIF3 subunit


Domain annotation for each model (and alignments):
>> IF-2B  Initiation factor 2 subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   1.9       1.2   5.3e+03      64      84 ..      91     111 ..      53     155 .. 0.57
   2 !  349.4   0.3  2.9e-108  1.3e-104       1     282 []     301     667 ..     301     667 .. 0.99

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 1.2
                 HCCTTTSSHHHHHHHHHHHHH CS
       IF-2B  64 selksssdvkeakksliekik 84 
                 ++lk++++ ++ +k+l e+ k
  CCD25919.2  91 AQLKKEKKQQQREKQLREEQK 111
                 223333333333333333333 PP

  == domain 2  score: 349.4 bits;  conditional E-value: 2.9e-108
                 SS-SHHHHHHHHHHHHHHHHHHCCCSTHHHH....HHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHCCTTTSSHHHHHHHHHHHHHHHHHH.HHHHH CS
       IF-2B   1 kvrGspaiaiaalevllevikdaktskvaeL....keelrkaidlLkkarPtavslgnairrllkeiselksssdvkeakksliekikelike.ieead 94 
                 k++Gs++++ia+le++++vi+d++t+k+++L    +++l+++id LkkarP++v++gn+ir+l++eis +++  +++eak +l+eki +++ke ie ad
  CCD25919.2 301 KIVGSIPRCIAMLEAFQIVIHDYQTPKGTTLsrnlTNYLSHQIDILKKARPLSVTMGNSIRWLKQEISLIDPGMNDSEAKLDLCEKIAQFAKEkIELAD 399
                 689************************************************************************************************ PP

                 HHHHHHHHTTC-TTEEEEEES--SHHHHHHHH.HHHTTEEEEEEEEEXTTTTHHHTHHHHHHHTTXEEEEEEGGGHHHHHHCTESEEEEEXSEEETTSE CS
       IF-2B  95 ekigdiaaelikdgdtilTicnsktvlevlra.aakekkkfkVivvEsrPrlqGrltakeLvqagipvtlitdsavayvmseevdkvivGAdrilenGa 192
                 ++i+d+a+++i++g ti+T+++sk+++e++ +   k kk++kVivv+srP ++Gr++a +L+++g++v++ + ++++++++++vd+v++GA++il+nG+
  CCD25919.2 400 QLIIDNASNHIENGATIVTYGSSKVLTEMILHnVLKLKKNIKVIVVDSRPLFEGRKMADKLRENGVNVMYSLVTSLNTIFNMDVDCVFLGAHSILSNGF 498
                 ********************************99***************************************************************** PP

                 EEEETTHHHHHHHHHHTTXEEEEEXXGGGBESTSSSGGGSSXXBEXTHHHHEETTEESSTT...................................... CS
       IF-2B 193 iankiGTsslAvlAkefnipvlvvaeslkfservqldedifieerdpeellnitgeriaee...................................... 253
                 +++++GT+++A++A+++nipvlv++eslkfs+rvqld+++f+e++dp++l+ i +e+++e+                                      
  CCD25919.2 499 LYSRTGTAMIAMSANRRNIPVLVCCESLKFSQRVQLDSVTFNELADPNDLITIGYENPVEKrgnkgillkqfikernemkkhseldnttnhkkqqqqqq 597
                 *************************************************************************************************** PP

                 .........................................TEEEEEBSEEEEEGGGXSEEEETTEEEXC CS
       IF-2B 254 .........................................elkvvnpafDvtPpelItliITevGvlpp 282
                                                          +l++vn+++D+tPpe+I++iITe+G+lpp
  CCD25919.2 598 qgksdgskgksgkngvstdnitandsditdknildgwqelpSLNIVNILYDLTPPEYIKKIITEFGALPP 667
                 ********************************************************************98 PP

>> Methyltransf_14  C-methyltransferase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.6   0.00038       1.7      15      79 ..      92     155 ..      79     166 .. 0.77
   2 ?    5.6   0.0    0.0029        13      33     107 ..     377     454 ..     366     459 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00038
  Methyltransf_14  15 eeakkevseavaellaeEkaagldeletyaeFaervekvkeellalllelkaegkkvvgYGAaak 79 
                      +  kke++++ +e   +E++++l++ +   +F+++ +k+k+ l   l++ +++  ++++ ++a +
       CCD25919.2  92 Q-LKKEKKQQQREKQLREEQKKLEKKNRKLNFKQQQQKLKSTLFGHLETTEERRATILALSSALT 155
                      3.33334444444445566778************************************9988765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0029
  Methyltransf_14  33 kaagldeletyaeFaervekvkeel.lalllelkaegkkvvgYGAaakg..ntllnycgigpdlldyvvDrnpaKqgk 107
                       +a+ld  e+ a+Fa++  ++ ++l ++   +  ++g ++v YG+++    ++l n++ +++++  +vvD+ p   g+
       CCD25919.2 377 SEAKLDLCEKIAQFAKEKIELADQLiIDNASNHIENGATIVTYGSSKVLteMILHNVLKLKKNIKVIVVDSRPLFEGR 454
                      4667778889999987666666554278999999***********986522677799999988777888988877766 PP

>> NBP1  Fungal Nap binding protein NBP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   8.8   5.3e-05      0.24     159     232 ..      58     134 ..       8     151 .. 0.79
   2 ?   11.6   0.1   2.9e-05      0.13      51     234 ..     204     404 ..     175     411 .. 0.64
   3 ?   -1.4   2.3      0.28   1.2e+03      30      62 ..     576     608 ..     558     631 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.3e-05
        NBP1 159 kqmleqLrrgrssnkserrvslr.nnnleeDqvvlLq..kkikklesklkdlekeLeitkkkLkFakeknkLleslL 232
                 ++ l+++ ++++  k++++++ +  +  ++ q  +L+  kk ++ e++l + +k+Le+ ++kL+F ++++kL   l+
  CCD25919.2  58 NKELKEVEEKEKAAKRAAQKQASgISIEQQQQSAQLKkeKKQQQREKQLREEQKKLEKKNRKLNFKQQQQKLKSTLF 134
                 44555555555555555554433034445667778872257899**************************9987776 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 2.9e-05
        NBP1  51 nssrskrikkvskkkseralrkkrrnsvekkrkkkp...................kkksslrsllesi.ksvFsneeqdlkrmknasenlnallp.... 125
                 n+s +  +++vs+ +++ +++ +            p                   +k+  ++ + + + +s F n+   ++++k+  +n + + p    
  CCD25919.2 204 NTSAAATASAVSQMDTALQSSSNIP----------PtisnanelgkalatitlesDKQTLVPGITSILnQSTFENNPSLVSSIKELLSNKDYIHPaiql 292
                 3333333333333333333333333..........1333333444466777565444444444444443357999999999999999999888888767 PP

        NBP1 126 .seelksreerkklkdrilrseaFkkkllelk..ydkqmleqLrrgrssnkserrvslrnnnleeDqvvlLqkkikklesklkdlekeLeitkkkLkFa 221
                  +++l +++    + + i+  eaF+  + + +     ++ ++L +  s++ +  ++    +      ++ L+++i  ++  ++d e +L +  k  +Fa
  CCD25919.2 293 lTSHLANYKIVGSIPRCIAMLEAFQIVIHDYQtpKGTTLSRNLTNYLSHQIDILKKARPLSVTMGNSIRWLKQEISLIDPGMNDSEAKLDLCEKIAQFA 391
                 6667777777777788888889998888887733223334444444444444444333345555678999***************************** PP

        NBP1 222 keknkLleslLdd 234
                 kek +L ++l+ d
  CCD25919.2 392 KEKIELADQLIID 404
                 ********99644 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.28
        NBP1  30 evkrrrrkrrkkrekessrnrnssrskrikkvs 62 
                 e+k++++ ++ +++k++++++++++s+ +k  s
  CCD25919.2 576 EMKKHSELDNTTNHKKQQQQQQQGKSDGSKGKS 608
                 333333333333333333333333333333332 PP

>> eIF3_subunit  Translation initiation factor eIF3 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  17.2   8.2e-05      0.37      29     126 ..      51     139 ..      27     168 .. 0.50
   2 ?    2.4   4.8     0.028   1.3e+02     188     235 ..     578     622 ..     566     633 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 8.2e-05
  eIF3_subunit  29 ededvkdswdaeeeeeeekekakkaaeakak....aakakkkkskkqkiaeke..errkaeeeeaeeeeeleeedeaarkerlrkaeeesDlknaad 119
                     ++v+++ + +e ee+ek+++ +aa+++a+    +              +++  ++ k+e++++++e++l ee+++ +k+ ++   ++   k+ + 
    CCD25919.2  51 PTDKVLSNKELKEVEEKEKAAK-RAAQKQASgisiE--------------QQQqsAQLKKEKKQQQREKQLREEQKKLEKKNRKLNFKQQQQKLKST 132
                   3345555555555554333332.2222222223220..............22222222223333333333334444434433333333344455566 PP

  eIF3_subunit 120 lFGgvat 126
                   lFG ++t
    CCD25919.2 133 LFGHLET 139
                   6666644 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.028
  eIF3_subunit 188 kkvassltvlaneKqkeeKaaekggKkkkkakaktslkadteaydddd 235
                   kk  s l++  n K +++ ++++++  +k++++k+ +   t++   +d
    CCD25919.2 578 KK-HSELDNTTNHKKQQQQQQQGKSDGSKGKSGKNGV--STDNITAND 622
                   44.4677788888888888877777777777777773..344443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4027  (0.224608); expected 358.6 (0.02)
Passed bias filter:                      859  (0.0479112); expected 358.6 (0.02)
Passed Vit filter:                       178  (0.00992805); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.10u 0.33s 00:00:01.43 Elapsed: 00:00:00.48
# Mc/sec: 4269.86
//
Query:       CCD25920.2  [L=345]
Description: hypothetical protein NDAI_0G01440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1028  (0.0573373); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2552.98
//
Query:       CCD25921.2  [L=246]
Description: hypothetical protein NDAI_0G01450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.037   13.9   0.0      0.051   13.4   0.0    1.3  1  HlyD      HlyD membrane-fusion protein of T1SS
       0.06   13.4   0.0       0.12   12.4   0.0    1.5  1  DUF4537   Domain of unknown function (DUF4537)


Domain annotation for each model (and alignments):
>> HlyD  HlyD membrane-fusion protein of T1SS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.7e-06     0.051      12      40 ..      75     126 ..      18     128 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.7e-06
                 E.......................EEEEEEEECEEEEEEEGCGEEECTTTSE CS
                 x.......................xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HlyD  12 a.......................etdldqvrvgqpvevrfdAfpqtktgkf 40 
                 +                       ++++ + +vg+pv+v  dA++ + + kf
  CCD25921.2  75 QnimvsiqtnmvdaqdrqsihfneHHRVTNFKVGDPVLVHKDAYNNKPFTKF 126
                 055555555555566666666666899******************9977665 PP

>> DUF4537  Domain of unknown function (DUF4537)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05      0.12      28      90 ..      77     148 ..      69     187 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.3e-05
     DUF4537  28 ylvefeaeetqeveerdiialedakehslkvgDkVLAlhdpeeqe.........YvPGiVlagpsakeeelt 90 
                 ++v+ + + + ++ +++i + e+ +    kvgD VL+ +d ++ +         Y+P +++++  +++  l 
  CCD25921.2  77 IMVSIQTNMVDAQDRQSIHFNEHHRVTNFKVGDPVLVHKDAYNNKpftkfhhlwYGPFKIIETLGDQTYRLN 148
                 577775555555555555555566799***********99999999999999*9***999987743333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1797.36
//
Query:       CCD25922.2  [L=152]
Description: hypothetical protein NDAI_0G01460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1117.62
//
Query:       CCD25923.2  [L=239]
Description: hypothetical protein NDAI_0G01470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-20   72.6   3.6    2.3e-20   72.6   3.6    1.6  2  DUP       DUP family


Domain annotation for each model (and alignments):
>> DUP  DUP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.11   1.9e+03      11      35 ..      54      74 ..      44      82 .. 0.39
   2 !   72.6   3.6   1.3e-24   2.3e-20       4      99 ..      76     168 ..      73     171 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.11
         DUP 11 lvllilllvalvlqnlrafsksvsd 35
                l++++     l+++ l+ f   +s 
  CCD25923.2 54 LFTALT----LIFTHLKNFPFTLSC 74
                222222....334444444333333 PP

  == domain 2  score: 72.6 bits;  conditional E-value: 1.3e-24
         DUP   4 lllrllvlvllilllvalvlqnlrafsksvsdekfkikllseiikekpavdakeWdtIaknmNqYLfenklwktpyfFydgedCeefFrklilepl 99 
                 +++  l l++++l+++   +++++   ++++ ++ +ik+l e+i+ kp+  +++Wd+Ia +mN+YL++++ ++tp fFydg+  ++ Fr  i+++l
  CCD25923.2  76 RFFMKLSLFSFLLMFLISSYWMFK--LCKMNLQS-EIKILLEVIECKPNASPHSWDIIACHMNEYLYSEGFYSTPNFFYDGSGVYRWFRFAIMKRL 168
                 344444444444444435677776..88899998.********************************************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1750.73
//
Query:       CCD25924.2  [L=918]
Description: hypothetical protein NDAI_0G01480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.5e-76  256.6   0.0    3.5e-76  256.6   0.0    2.1  3  Syja_N    SacI homology domain


Domain annotation for each model (and alignments):
>> Syja_N  SacI homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.4      0.33   5.9e+03      63      63 ..      39      39 ..      10      90 .. 0.52
   2 !  256.6   0.0     2e-80   3.5e-76       1     318 [.     143     460 ..     143     462 .. 0.85
   3 ?   -1.9   0.4     0.093   1.7e+03      95     135 ..     609     646 ..     543     694 .. 0.59

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.33
      Syja_N 63 k 63
                +
  CCD25924.2 39 Q 39
                1 PP

  == domain 2  score: 256.6 bits;  conditional E-value: 2e-80
      Syja_N   1 ygilGlirllsgsyllvitkreevgtlkgkkeiykitevellplsseeeaekalkslkaktekkkeekeleekllklleklfessgsfYFsydlDltrs 99 
                 yg+lG+ir+ s++yl+vitk+++v+ ++g+  + +i+ +el+p+s++       k        k+++ + e++l++++ +++  s++fYFsy++D+t++
  CCD25924.2 143 YGLLGFIRFTSCYYLVVITKCSQVAVIGGH-FVSHIDGTELIPISNN------YK--------KPDKGSVEARLMQTF-QNLDLSKTFYFSYTYDVTNT 225
                 79******99****************9665.************9544......11........223344599***999.89999*************** PP

      Syja_N 100 lqrqleks.......sesskslpl......weraderFvWNrhllkpli...eaeldswllpviqGfveqsklklsksqkekekkevtltlisRrsrkr 182
                 lq +l ++       s              +  ++e FvWN++llkp++   +  + +w+  +i+Gf+ q ++ l        +k++++tl++Rrs ++
  CCD25924.2 226 LQVNLLREkfkavgrS-------DivvpcgIPDYNEMFVWNNNLLKPILsciD-SVYDWFQCIIHGFIDQVNVCL-------MGKNIYITLLARRSHHF 309
                 *****99754444321.......02233335566889**********774523.69************8777764.......4689************* PP

      Syja_N 183 aGtRylrRGiddeGnvANfvEtEqileves............sekeskilSfvqiRGSiPlfWsqeptlky.kpkirierseeenleafkkHfekllkr 268
                 aG+R+l+RG++ eG vAN+vEtEqi+ +              +  + +++Sfvq+RGSiPl+W+qe ++   kp+i+i+   +   + ++ Hf+kl++r
  CCD25924.2 310 AGARFLKRGVNTEGFVANEVETEQIVADMVltpfhkpgngyfD--SDRYTSFVQHRGSIPLYWTQEVSNLTaKPPIEIN-VVDPFFSPAALHFDKLFQR 405
                 ***************************66689******99644..4589****************9976667******6.8888999************ PP

      Syja_N 269 Yg..kvvvvnLl...ekkgrEkkLgeayekavkklnk.lekekkklkyveFDfhke 318
                 Yg   ++++nL+   ekk+rE kL +++e+++++ln+ l+ke kk++y+++D+++ 
  CCD25924.2 406 YGggVIQILNLIktkEKKPREVKLLKEFEQCINYLNRfLPKE-KKMEYTSWDMSRV 460
                 *85459******999999******************988766.9*********876 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.093
      Syja_N  95 Dltrslqrqleks......sesskslplweraderFvWNrhllkpli 135
                 D t         +        ++ + +lwe  ++ ++ N++++  l 
  CCD25924.2 609 DAT---------NlflgnyVWKKGYPSLWEMNTDFYLHNEYIQDGLK 646
                 222.........13333332233333456666666666666555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1239  (0.0691059); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 5857.50
//
Query:       CCD25925.2  [L=434]
Description: hypothetical protein NDAI_0G01490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-25   87.1  11.6    4.7e-25   87.1  11.6    7.1  9  KRE1        Killer toxin-resistance protein 1


Domain annotation for each model (and alignments):
>> KRE1  Killer toxin-resistance protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   3.7      0.23   4.2e+03      10      57 ..      24      69 ..      19      78 .. 0.51
   2 ?   -7.9   8.5         1   1.8e+04       5      24 ..      64      84 ..      55      88 .. 0.59
   3 ?  -11.0  13.1         1   1.8e+04       9      22 ..      82      95 ..      73     123 .. 0.73
   4 ?   -3.7   3.2      0.59   1.1e+04       6      24 ..     143     161 ..     135     177 .. 0.66
   5 ?   -3.2   3.5       0.4   7.2e+03      10      25 ..     169     185 ..     160     189 .. 0.74
   6 ?   -3.8   4.5      0.64   1.1e+04      11      29 ..     209     228 ..     197     245 .. 0.62
   7 ?  -10.6  12.0         1   1.8e+04       3      12 ..     265     274 ..     220     288 .. 0.54
   8 ?   -6.3   7.3         1   1.8e+04       5      24 ..     267     286 ..     245     306 .. 0.73
   9 !   87.1  11.6   2.6e-29   4.7e-25       1      66 []     344     409 ..     344     409 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.23
        KRE1 10 wvTvt.snGklttvqttYsQsFsstytevas.vssGsIGLGsisgtvGev 57
                 +Tvt ++G+++   +++         ++a   +    GL + ++ vG  
  CCD25925.2 24 LITVTdAAGAVAIQTSIFDP----ATVAAAAvDAVTAAGLVTTTNAVGAL 69
                67778555665555555543....22222221223344666666666655 PP

  == domain 2  score: -7.9 bits;  conditional E-value: 1
        KRE1  5 spTsvwvTvt.snGklttvqt 24
                ++    +T+t ++  ++t+ t
  CCD25925.2 64 NAVGALITITnTAATTATTAT 84
                444455666655555555555 PP

  == domain 3  score: -11.0 bits;  conditional E-value: 1
        KRE1  9 vwvTvtsnGklttv 22
                  +T t+nG+ tt+
  CCD25925.2 82 TATTKTTNGAATTT 95
                34566688888876 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 0.59
        KRE1   6 pTsvwvTvtsnGklttvqt 24 
                  Tsv vT+ ++ + +t+ t
  CCD25925.2 143 FTSVIVTTNVANVPVTLTT 161
                 4777777776555555444 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 0.4
        KRE1  10 wvTvt.snGklttvqtt 25 
                  +T++ ++G+++t+ tt
  CCD25925.2 169 LITTVnAAGVTATLTTT 185
                 45555599*99999987 PP

  == domain 6  score: -3.8 bits;  conditional E-value: 0.64
        KRE1  11 vTvt.snGklttvqttYsQs 29 
                 +T+t   G ++t+ +t +  
  CCD25925.2 209 ITTTnDLGITVTLTSTLTPI 228
                 45554777777777776554 PP

  == domain 7  score: -10.6 bits;  conditional E-value: 1
        KRE1   3 trspTsvwvT 12 
                    +Ts  +T
  CCD25925.2 265 AVGSTSLITT 274
                 2223333333 PP

  == domain 8  score: -6.3 bits;  conditional E-value: 1
        KRE1   5 spTsvwvTvtsnGklttvqt 24 
                  +Ts  +T+ ++G ++t+ t
  CCD25925.2 267 GSTSLITTTNAAGIIVTLTT 286
                 45555555557777766665 PP

  == domain 9  score: 87.1 bits;  conditional E-value: 2.6e-29
        KRE1   1 tttrspTsvwvTvtsnGklttvqttYsQsFsstytevasvssGsIGLGsisgtvGevrsyeqtTis 66 
                 tttr++Ts+wvT+ts+G+l+t+ tt++Q+Fs++y +vas+ssGsIG+Gs+sgtvG++++++ +Tis
  CCD25925.2 344 TTTRAKTSIWVTITSQGHLITAPTTFAQRFSQQYVTVASPSSGSIGMGSHSGTVGVIKTNMVSTIS 409
                 79**************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1165  (0.0649785); expected 358.6 (0.02)
Passed bias filter:                      202  (0.0112667); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.31s 00:00:00.93 Elapsed: 00:00:00.46
# Mc/sec: 2861.56
//
Query:       CCD25926.2  [L=1007]
Description: hypothetical protein NDAI_0G01500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-17   64.3  34.5    5.1e-15   55.7  13.4    3.5  5  Na_Ca_ex  Sodium/calcium exchanger protein
    1.6e-13   51.1   4.5    1.6e-13   51.1   4.5    4.6  4  YccF      Inner membrane component domain


Domain annotation for each model (and alignments):
>> Na_Ca_ex  Sodium/calcium exchanger protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.5      0.45     4e+03      37      57 ..     270     289 ..     255     306 .. 0.48
   2 ?   -4.5   0.7         2   1.8e+04     108     122 ..     465     478 ..     457     486 .. 0.46
   3 ?   -4.0   0.3       1.4   1.3e+04     116     123 ..     560     567 ..     545     582 .. 0.43
   4 !   23.7  13.1   4.1e-09   3.7e-05       5     121 ..     589     706 ..     587     780 .. 0.77
   5 !   55.7  13.4   5.7e-19   5.1e-15       2     148 ..     840     994 ..     839     997 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.45
                 HHHHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  37 vlGltllAlgnslpElissii 57 
                 ++Gl +lA   sl+ +i++i 
  CCD25926.2 270 TVGL-FLASLFSLGGIIVAIL 289
                 2222.3333333333333333 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 2
                 HHHHHHHHHHHHTCH CS
    Na_Ca_ex 108 lvallllllvlllll 122
                 l+ +ll++ ++++++
  CCD25926.2 465 LIFALLSW-LFVFTI 478
                 22222222.222233 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 1.4
                 HHHHTCHH CS
    Na_Ca_ex 116 lvlllllp 123
                 ++++++++
  CCD25926.2 560 IAIVFFTI 567
                 11111222 PP

  == domain 4  score: 23.7 bits;  conditional E-value: 4.1e-09
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHH.....BTTSSCE CS
    Na_Ca_ex   5 lfilslllisvladflvssaeeiakslgisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigs.....lkvdses 98 
                 +f+l+l  i++la+++ +++++i+     +   +G +++A+++++ E+++  +a+ + ++ l+ g+++Gs++  +ll  Gl+++ g+       +++ s
  CCD25926.2 589 IFMLCLTSIIPLAFYIGQAVASIS---AQTSMGVGAVINAFFSTIVEIFLYCVALQQRKGPLVEGSMIGSILGAVLLLPGLSMCGGAwnrktQRYNPAS 684
                 7999********************...7777889***************************************************99443322222222 PP

                 CCHHHHHHHHHHHHHHHHHHHTC CS
    Na_Ca_ex  99 lkldlgllllvallllllvllll 121
                   ++ ++ll++++l++++  +l+
  CCD25926.2 685 AGVS-SALLIFSMLVMFVPTILY 706
                 3333.366666666666655555 PP

  == domain 5  score: 55.7 bits;  conditional E-value: 5.7e-19
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.TCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHH........ CS
    Na_Ca_ex   2 lfvlfilslllisvladflvssaeeiaksl.gisgsvlGltllAlgnslpElissiiaaltgevdlaignvlGsnifnlllviGlialigs........ 91 
                 +++++++++ll +v+a++lv +++++ + +  +++++lGlt++Al+ + +E++ +i++a++g+v l++    + +++++ll i+  ++++         
  CCD25926.2 840 STWILLVATLLYAVIAEILVACVDSVLEDFpSLNPKFLGLTIFALVPNTTEFLNAISFAIHGNVALSMEIGSAYALQVCLLQIPALVIYSIwytwswdr 938
                 78*************************9898**********************************************************7788888888 PP

                 ..BTTSSCECCHHHHHHHHHHHHHHHHHHHTCHHHHHHTEEHHHHHHHHHHHHHHHHHH CS
    Na_Ca_ex  92 ..lkvdseslkldlgllllvallllllvlllllplfvpgrltvleglvllllYalylvl 148
                   + ++++ + + ++ + l+a + +++++++l  +  +g+ ++++g +l+llY+++++ 
  CCD25926.2 939 smINIREQMFSMIFPRWDLIASMGSVFLFTYL-YA--EGKSNYFKGSMLILLYVIVILG 994
                 85566665667777667776666666666644.34..4*****************9976 PP

>> YccF  Inner membrane component domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   4.5   1.8e-17   1.6e-13       1      51 []     262     316 ..     262     316 .. 0.96
   2 ?    0.9   7.4     0.086   7.8e+02       4      42 ..     450     488 ..     447     490 .. 0.90
   3 ?   -5.4   2.5         2   1.8e+04      12      27 ..     842     857 ..     841     862 .. 0.54
   4 ?   -2.2   0.3      0.78     7e+03      11      26 ..     981     996 ..     979     999 .. 0.80

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 1.8e-17
        YccF   1 lgNilWlllfGwwlaliyllaglllfitii....gipygrvlfklakyllwPFGk 51 
                 ++Ni+W++++G++la ++ l+g++++i+      +++y++v+f+la+yl+ PFGk
  CCD25926.2 262 ISNIIWSFTVGLFLASLFSLGGIIVAILGLftksAREYSIVCFRLARYLFLPFGK 316
                 68************************99779999********************8 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.086
        YccF   4 ilWlllfGwwlaliyllaglllfitiigipygrvlfkla 42 
                 ++  ++f ++l    l+++ll  +++++ip++  l++l+
  CCD25926.2 450 LIFYFCFHLFLQPFVLIFALLSWLFVFTIPMSNILWNLM 488
                 67788999999999***********************97 PP

  == domain 3  score: -5.4 bits;  conditional E-value: 2
        YccF  12 wwlaliyllaglllfi 27 
                 w+l +++ll +++  i
  CCD25926.2 842 WILLVATLLYAVIAEI 857
                 5555555555555444 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 0.78
        YccF  11 Gwwlaliyllaglllf 26 
                 G  l l+y+++ l +f
  CCD25926.2 981 GSMLILLYVIVILGFF 996
                 7788999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1007 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1005  (0.0560544); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.45
# Mc/sec: 6695.63
//
Query:       CCD25927.2  [L=285]
Description: hypothetical protein NDAI_0G01510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-14   53.7   0.0    2.2e-09   37.0   0.0    2.1  2  Hydrolase_4    Serine aminopeptidase, S33
    2.7e-12   46.9   0.0    1.8e-09   37.6   0.0    2.2  2  Abhydrolase_1  alpha/beta hydrolase fold
    9.2e-06   25.3   0.0    2.3e-05   24.0   0.0    1.6  1  Peptidase_S9   Prolyl oligopeptidase family
    0.00029   20.6   0.0     0.0004   20.1   0.0    1.3  1  FSH1           Serine hydrolase (FSH1)
    0.00094   19.2   0.0     0.0094   15.9   0.0    2.1  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
     0.0066   17.1   0.0     0.0082   16.8   0.0    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.012   15.4   0.0        1.5    8.6   0.0    2.2  2  Abhydrolase_2  Phospholipase/Carboxylesterase
      0.018   14.6   0.0        4.5    6.7   0.1    2.3  2  LIDHydrolase   Lipid-droplet associated hydrolase
      0.026   13.6   0.0      0.038   13.1   0.0    1.3  1  DUF1749        Protein of unknown function (DUF1749)
      0.031   13.9   0.0      0.039   13.6   0.0    1.2  1  Esterase       Putative esterase
      0.031   13.2   0.1      0.055   12.4   0.1    1.3  1  DUF818         Chlamydia CHLPS protein (DUF818)
      0.032   13.8   0.0       0.24   10.9   0.0    2.1  1  DLH            Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   1.5e-12   2.2e-09      29     127 ..     105     202 ..     102     217 .. 0.83
   2 !   14.8   0.0   8.5e-06     0.013     191     232 ..     221     262 ..     204     265 .. 0.89

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1.5e-12
  Hydrolase_4  29 aqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvk.eehpel.plfllGhSmGGliallyllrypdkvaglilsaPalkikaklk.appll 123
                  + G +v+++ +rG+G+s+g     p+ + +  D++ +v+ ++ ++h+++ +l+l+G S+GG+ al ++ + p+ ++g+il +++l+i++ ++ + p+l
   CCD25927.2 105 QFGLSVFIYSYRGYGHSQG----SPNENGMKLDAERVVSYLAtDPHHKErRLILYGRSLGGANALYIASKFPQLCDGVILENTFLSIRKVIPyIFPWL 198
                  5799*************55....677999*********999964444445***********************999************8766655555 PP

  Hydrolase_4 124 klll 127
                    ++
   CCD25927.2 199 SRFS 202
                  5544 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 8.5e-06
  Hydrolase_4 191 tlPllllhGeaDkvvdpeasrelyerlgskdktlklypglyH 232
                  t+ +l+l G++D++v+p+  ++lye +++++k++  +p + H
   CCD25927.2 221 TTSFLFLNGSRDEIVPPAHMKKLYELCPARKKKFFEFPLGHH 262
                  4889********************************999999 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   1.2e-12   1.8e-09       9     126 ..      88     197 ..      81     203 .. 0.78
   2 !    7.1   0.0    0.0025       3.7     213     250 ..     223     261 ..     207     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 1.2e-12
                    TTTCGGGGTTGHHHHHHHHT.TSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHH..HHHCTTSSEEEEEETHHHHHHHHHHHHHGGGEEEE CS
  Abhydrolase_1   9 lpgssdvwaerglapaLakd.gfdvillDlrGvgySspapacinddygtasvaddldri..ldalgddkltlvGhSmGGmialayaaeyperVkal 101
                     +g+ ++++   + + + ++ g  v+++  rG+g+S+ +p++   +    + ++++ ++    +++ ++l+l G S+GG+ al+ a+++p+ ++++
     CCD25927.2  88 NAGNIGYFIP--ILDIFYRQfGLSVFIYSYRGYGHSQGSPNE---NGMKLDAERVVSYLatDPHHKERRLILYGRSLGGANALYIASKFPQLCDGV 178
                    5677888888..88888888999******************6...445567******88844455666666************************* PP

                    EEESECSSCCHHHHHHHHHHHHHHC CS
  Abhydrolase_1 102 vllgaidpaaslieaqrqqaksfpd 126
                    +l ++      + +  + + + fp+
     CCD25927.2 179 ILENT------FLSIRKVIPYIFPW 197
                    ****9......44444444444444 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0025
                    EEEEEEETTCSSSCHHHHHHHHHCHTS.EEEEEEETCSS CS
  Abhydrolase_1 213 ptlvisgtsDplvppkaledlaqllpk.krlvvisdagH 250
                      l++ g+ D +vpp ++ +l +l+p  k+++ +++ gH
     CCD25927.2 223 SFLFLNGSRDEIVPPAHMKKLYELCPArKKKFFEFPLGH 261
                    57899**********************766666666666 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.6e-08   2.3e-05      47     175 ..     133     253 ..     102     263 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.6e-08
                   HHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTS..THHHCCCC--TTTCHHHHHHHHHH-CGGG-- CS
  Peptidase_S9  47 DfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdl..lteeymewgnpeeneegykelspyspldnvk 141
                   D   ++ +la+    +++rl+++G S GG +++ ++ + p+l ++++ e+ ++  ++      +  +  ++ ++  + +n eg   +   +   +  
    CCD25927.2 133 DAERVVSYLATDPHHKERRLILYGRSLGGANALYIASKFPQLCDGVILENTFLSIRKVIPY--IfpWLSRFSFMCHEIWNSEGL--M---T---QCS 219
                   677899**************************************************99988..435555777776766677766..2...2...223 PP

                   ---EEEEEEETT-SSS-THHHHHHHHHHH--S-S CS
  Peptidase_S9 142 aypplLlihGlaDdrvppaealklvaaLqkkgkn 175
                   +++++L++ G  D+ vppa+  kl++ +  ++k+
    CCD25927.2 220 ETTSFLFLNGSRDEIVPPAHMKKLYELCPARKKK 253
                   6899********************9988766666 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.7e-07    0.0004     160     201 ..     220     262 ..     129     263 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 2.7e-07
        FSH1 160 iqtptLhvlGelDtvvdeerseaLaeafkns.skvlkHpggHf 201
                  +t +L++ G++D++v+++ +++L+e +  + +k++++p gH+
  CCD25927.2 220 ETTSFLFLNGSRDEIVPPAHMKKLYELCPARkKKFFEFPLGHH 262
                 37899************************999**********6 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   6.3e-06    0.0094       7      50 ..     135     178 ..     134     222 .. 0.84
   2 ?    1.1   0.0      0.21   3.1e+02     115     136 ..     221     242 ..     210     254 .. 0.85

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6.3e-06
                 HHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSEEEEE CS
      BAAT_C   7 eeainyllrhpkvkkdkigllGiSkGgelalllasflkkisavv 50 
                 e+ ++yl   p  k+++  l+G+S Gg  al++as++++    v
  CCD25927.2 135 ERVVSYLATDPHHKERRLILYGRSLGGANALYIASKFPQLCDGV 178
                 67899********************************9865444 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.21
                 -SEEEEEEETT-SSS-HHHHHH CS
      BAAT_C 115 kgpillvvgedDknwpSkesae 136
                  +++l+++g  D+++p +++ +
  CCD25927.2 221 TTSFLFLNGSRDEIVPPAHMKK 242
                 589************9988765 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   5.5e-06    0.0082      26      95 ..     107     182 ..      83     257 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.5e-06
                    TCEEEEE--TTSTS-GGCS......--HHHCHHHHHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC.......EEEEES- CS
  Abhydrolase_6  26 gvhvlapDlpGhGrsdppp......ldledladlaalldelaagggpvvlvGHSlGGalalaaapla.....lvvgvlldp 95 
                    g  v++++++G+G+s ++p      ld e+++ ++a+  +     ++ +l G SlGGa al     a     l  gv+l+ 
     CCD25927.2 107 GLSVFIYSYRGYGHSQGSPnengmkLDAERVVSYLATDPHH--KERRLILYGRSLGGANALY---IAskfpqLCDGVILEN 182
                    456699*******8877774444445555555553333333..46888**********8888...4444457666666665 PP

>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0     0.001       1.5     103     145 ..     148     190 ..     132     206 .. 0.87
   2 ?    4.9   0.0     0.013        20     150     187 ..     215     252 ..     198     281 .. 0.77

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.001
                    -GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGG CS
  Abhydrolase_2 103 pssriiigGFSqGaalalylaltlpkklggivafsgalplsqk 145
                    ++ r i+ G S G+a aly a + p+   g++  + +l++++ 
     CCD25927.2 148 KERRLILYGRSLGGANALYIASKFPQLCDGVILENTFLSIRKV 190
                    67899***************************99999998765 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.013
                    S-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS- CS
  Abhydrolase_2 150 atavtkklpilqiHgeeDpvvplalgkaakevlkkllk 187
                    +t++   ++ l + g+ D++vp a++k+++e+  +  k
     CCD25927.2 215 MTQCSETTSFLFLNGSRDEIVPPAHMKKLYELCPARKK 252
                    56777888999999***************998766544 PP

>> LIDHydrolase  Lipid-droplet associated hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1     0.003       4.5       4     109 ..      81     174 ..      78     203 .. 0.73
   2 ?    5.8   0.0    0.0059       8.8     211     254 ..     208     252 ..     200     263 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.003
  LIDHydrolase   4 livlipGNPGlveFYetFlsllseklnpelevlgishaGfeleeeekeakenekvfsLedQiehkedflkellekaksekdvklilvGHSvGaYial 100
                   +++++  N G ++++ + l   + ++   l+v ++s++G+  ++ +     ne+  +L+      e ++  +l ++ ++k+++lil G S G   al
    CCD25927.2  81 TVLILCPNAGNIGYFIPILDIFYRQF--GLSVFIYSYRGYGHSQGS----PNENGMKLDA-----ERVVS-YLATDPHHKERRLILYGRSLGGANAL 165
                   56777779999999999999999995..677888888888777777....6677777763.....33444.4445778999***********99999 PP

  LIDHydrolase 101 evlkrlser 109
                    +++++++ 
    CCD25927.2 166 YIASKFPQL 174
                   999988875 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0059
  LIDHydrolase 211 deeedvllkknkeka.lvfyfgkkDhWvpeetrdelkellgeekl 254
                    ++ + l++++ e + ++f+ g+ D+ vp  ++++l el+++ k 
    CCD25927.2 208 IWNSEGLMTQCSETTsFLFLNGSRDEIVPPAHMKKLYELCPARKK 252
                   566677888888877799**********************98544 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   2.5e-05     0.038      71     140 ..     114     181 ..     100     258 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.5e-05
     DUF1749  71 syggwGtgsLkrDae....eieklveYlkktksGeekkekvvlmGHstGsqdvlyYltssnerdrekvdgailq 140
                 sy g+G +    +++    + e++v Yl ++   ++k+++++l G s G  + ly +++     ++  dg il 
  CCD25927.2 114 SYRGYGHSQGSPNENgmklDAERVVSYLATDP--HHKERRLILYGRSLGGANALYIASKF----PQLCDGVILE 181
                 899999865555544111245799******94..99*****************9766554....3566666665 PP

>> Esterase  Putative esterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.6e-05     0.039     101     143 ..     136     178 ..     120     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHCSEECCCEEEEEETHHHHHHHHHHHCSTTTCCEE CS
    Esterase 101 eLlplldanfrtapdgravaGqSmGGlgALilalkhpdrFgsv 143
                 +++++l++  + ++++  + G S+GG  AL++a+k p++   v
  CCD25927.2 136 RVVSYLATDPHHKERRLILYGRSLGGANALYIASKFPQLCDGV 178
                 56666776666777767899*****************976555 PP

>> DUF818  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.7e-05     0.055     169     227 ..     105     162 ..      97     169 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.7e-05
      DUF818 169 llganilvfnYPGvmsskGeitrenlakayqaCvrYLrDkeqGPkakeiiayGYsLGtl 227
                 + g  + ++ Y G  +s+G+ + + +    +  v YL  +++  k +++i yG sLG+ 
  CCD25927.2 105 QFGLSVFIYSYRGYGHSQGSPNENGMKLDAERVVSYLATDPHH-KERRLILYGRSLGGA 162
                 667789*******************************988874.77899********84 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00016      0.24      76     126 ..     128     179 ..      91     261 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00016
         DLH  76 ekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaevpev.daav 126
                 + ++ d++  v yl+++p+ ++ ++ + G  +GGa al++a++ p++ d+++
  CCD25927.2 128 NGMKLDAERVVSYLATDPHHKERRLILYGRSLGGANALYIASKFPQLcDGVI 179
                 4556678889**********************************66514444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      319  (0.0177924); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2098.01
//
Query:       CCD25928.2  [L=530]
Description: hypothetical protein NDAI_0G01520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     2e-118  396.1  29.1   2.3e-118  395.9  29.1    1.0  1  Sugar_tr  Sugar (and other) transporter
    2.9e-27   95.6  28.0    7.9e-24   84.2  20.7    2.0  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.17   11.9   0.1        0.3   11.1   0.1    1.3  1  DUF1285   Protein of unknown function (DUF1285)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  395.9  29.1  3.8e-122  2.3e-118       2     452 .]      60     520 ..      59     520 .. 0.96

  Alignments for each domain:
  == domain 1  score: 395.9 bits;  conditional E-value: 3.8e-122
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.....HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTT CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskee..ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakg 98 
                 ++ +a++g+  g+d+g+ig+++++ +f+++fg s  ++   +   ++l+gli sif++G+++Gs+++ +l+d+fGRk +l ++++++vig ++q++ + 
  CCD25928.2  60 CIAIAFAGFTLGWDIGTIGGMTSMESFQNRFGTSYDSQRGVQyfPDLLLGLIISIFNIGCAVGSVTLAKLADWFGRKTGLYVTVIIYVIGLLIQIIND- 157
                 899****************************9877776666677******************************************************. PP

                 TSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-....TTHHHHHHHCCHHHHHHHHHHGGGS-- CS
    Sugar_tr  99 knsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn....adgwrillglqlvpallllilllflPE 193
                  +++ ++++gR+++G+++G  +v++Pm+++E+Ap ++Rg ++++yq ++tfGil++ i++++  ++      ++ w+ +lgl +++a +++ +++  PE
  CCD25928.2 158 -RTWIQFFIGRIVCGFAIGSSNVVAPMFLAEVAPVRIRGGIIVFYQIMLTFGILMGNIVNYACHQSFPgpnqNEAWKTPLGLGFAWACIMMGGIWCSPE 255
                 .78************************************************************77666699999************************* PP

                 -HHHH.HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH...........HTTHHHHSH....HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHS CS
    Sugar_tr 194 SPryl.vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee......kaswkellsskt.vrqrlligvvlqifqqltGinaimyysptifenl 284
                    yl ++kg+ + ake++a ++g++++++  +e ++ ++++++ee        +w e+++      +r++ig  l++ qql+Gin+++yy+ t+f+n+
  CCD25928.2 256 PAPYLaLKKGRIDSAKESFAMMNGVSKDSKLTDEFIEDMNQKMKEEiilkkqPRKWFEFVRGEPrLGYRVFIGTILMASQQLSGINYFFYYGVTLFKNA 354
                 9999978889999*****************************9999***8888899999999779999******************************* PP

                 S-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS...CHHHHHHHHHHHHHHHTTTTHHHHHHHHHHSHTT CS
    Sugar_tr 285 glsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvakskaasivaivfialfialfalgwgpvpwvlvsElfpqs 382
                 gl++++++ i++++vnfv tf +i+lv+r+GR+ +l+ G++gm++c+++++ i  ++l+    + +i++iv  +++ia+fa+++gpv  vlv+Elfp++
  CCD25928.2 355 GLNDPYVAAIVMSIVNFVGTFGGIYLVERVGRKLCLVYGSFGMFCCMIVYStIGSFALNLP--GTNIGMIVVACIYIAFFATTLGPVTVVLVAELFPLR 451
                 ***************************************************7666665555..78********************************** PP

                 THHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 383 vRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                 ++++ +a +  +nwlanf+is++ p i ++ig + +++vfa+++ +++if +  vpetk +t  ei+ +f
  CCD25928.2 452 TKAISMATCSDANWLANFAISFTSPLIISQIG-FRYGYVFAACLFFSTIFSVTNVPETKDKTTSEIDDMF 520
                 ********************************.**********************************998 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2  20.7   1.3e-27   7.9e-24       1     318 [.      63     428 ..      63     433 .. 0.83
   2 !   23.7   8.7   3.3e-09     2e-05      54     184 ..     379     515 ..     379     527 .. 0.80

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 1.3e-27
       MFS_1   1 lllaaflsalarsilgpalpl.alaedlgispse...........igllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa.sslw 86 
                 +++a+f  +++++++g + ++   ++ +g s ++           +gl+++++ +g+av+s+ l+ l+d fGr+  l ++++++++g ll+ ++    w
  CCD25928.2  63 IAFAGFTLGWDIGTIGGMTSMeSFQNRFGTSYDSqrgvqyfpdllLGLIISIFNIGCAVGSVTLAKLADWFGRKTGLYVTVIIYVIG-LLIQIInDRTW 160
                 6899*****************9*******8888888888888989******************************************.66665458899 PP

       MFS_1  87 .lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepp 177
                   ++++r+++G++ g+++ ++  ++a+++p + rg  i +++++  +G+++g ++  ++ +s+        W  +  +  + +++++  +++  pe++p
  CCD25928.2 161 iQFFIGRIVCGFAIGSSNVVAPMFLAEVAPVRIRGGIIVFYQIMLTFGILMGNIVNYACHQSFPgpnqneaWKTPLGLGFAWACIMMG-GIWCSPEPAP 258
                 99**********************************************************88777********998888888888844.3388899999 PP

       MFS_1 178 erkrkspkeee..................................kgtgpaplvpawkallkdpvlw.illialllf....ffgfsglltllplylqev 237
                   + k+++ ++                                   +++p+++++    ++  p l   ++i+ +l+      g+++++++  + l + 
  CCD25928.2 259 YLALKKGRIDSakesfammngvskdskltdefiedmnqkmkeeiiLKKQPRKWFE---FVRGEPRLGyRVFIGTILMasqqLSGINYFFYYGVT-LFKN 353
                 99999999998*********************99999999997776666666666...777777663533333333323335566668888888.599* PP

       MFS_1 238 lgls.glllaglllallalvgailallagrlsdrlgrrrrlllallllllaalglallavt......ssavllllvlvliGf.glgfvf 318
                  gl+   + a+++++++ +vg    + + +l+ r+gr+  l+ + ++++++ + +  ++ +      ++          iG+  +++++
  CCD25928.2 354 AGLNdP-YVAAIVMSIVNFVG---TFGGIYLVERVGRKLCLVYGSFGMFCCMIVYSTIGSFalnlpgTN----------IGMiVVACIY 428
                 ****44.88888888888888...55588888***************************9954333222..........3333333332 PP

  == domain 2  score: 23.7 bits;  conditional E-value: 3.3e-09
       MFS_1  54 rlsdrfGrrrvlllglllfalg.lllll...fa.....sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsa..gfslGailgpllg 141
                 +l++r+Gr+ +l+ g ++++ + +++ +   fa     +++ +++v+ +  +++a +l p+ ++l+a++fp   r++ai++++   ++ l+       +
  CCD25928.2 379 YLVERVGRKLCLVYGSFGMFCCmIVYSTigsFAlnlpgTNIGMIVVACIYIAFFATTLGPVTVVLVAELFPL--RTKAISMATCsdANWLANFAISFTS 475
                 6899******888888888888344444555657777788889****************************8..777777776666999999999999* PP

       MFS_1 142 gllasslgWravfyilaivsllafvlfllllpeepperkrksp 184
                 +l++s++g+r+ ++++a +++  +     +  +++++ k+ s+
  CCD25928.2 476 PLIISQIGFRYGYVFAACLFFSTIF---SVTNVPETKDKTTSE 515
                 ************9999999999855...555555555555555 PP

>> DUF1285  Protein of unknown function (DUF1285)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   5.1e-05       0.3      34      69 ..       8      43 ..       2      47 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.1e-05
                T.EEEEE-SS-EEEEEESS-SEEEEEEEEES-GGG- CS
     DUF1285 34 dgeyfLvtPveklrIeVeDapflavevevegegeeq 69
                ++  +++tP+++++I+V D p+++++ + ++e++ +
  CCD25928.2  8 EEIQHVITPTDRITITVPDDPLIVTSNKKSNEQDGR 43
                4456789******************99999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       968  (0.0539907); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 3721.38
//
Query:       CCD25929.2  [L=346]
Description: hypothetical protein NDAI_0G01530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-37  126.6   0.0    2.1e-36  125.4   0.0    1.5  1  PDT       Prephenate dehydratase


Domain annotation for each model (and alignments):
>> PDT  Prephenate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   1.2e-40   2.1e-36       1     182 [.      12     229 ..      12     230 .. 0.84

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 1.2e-40
                 EEEES-TTSHHHHHHCCCS........EEEEES-HHHHHHHHCTTS.-SEEEEEEEES.SS-B-HHHHHHHHH.S.S............EEEEEEEEEE CS
         PDT   1 vaylGpegtyshqAalkvf...kaedvelipvasieevfeavekge.adyavvPiENs.teGsVnetlDlLlkes.d............lkivgEvvlp 81 
                 v +lGp+gtyshqAal++f    ++++ ++p++si+++f+ +ek++ ++y+  P+    +  +   ++ lL++++ +            l++vgE++++
  CCD25929.2  12 VLFLGPKGTYSHQAALQHFghlCDSSIYFVPTRSIPQCFDDLEKDTsVNYSSCPLRVIlLMDKWFFSYALLRDQMiQsknkihnriitpLEVVGEQYVS 110
                 78*****************9888999*******************955******998625778899999999977526899****************** PP

                 ---EEEE-TT-....-TTT..--EEEE-HHHHHHTHHHHHH-....TTSE..EEE-S-HHHHHHHHHHCT-TT.......EEEEE-HHHHHHTT-EEEE CS
         PDT  82 iehcLlakpkt....klee..ikkvyShpqalgQcrkfLeeh...lpqve..rvavestaeAakkveassdkd.......aaaiasevaaelyglkvle 162
                 i+hcL+++       +l++    k+yShpq++gQ++ +L+     +++++   ++++st+eA+++  + +++         +aias++aa+l++  +++
  CCD25929.2 111 ISHCLISPVTFpkgdNLSNynHVKIYSHPQVWGQVSLYLTDLkakYRHMKfeCIDTTSTSEAVRIALETQNNGtqdskvlNLAIASQTAANLFNGVIID 209
                 *****98654465566666224469**************988666444444499***********6553333334556669****************** PP

                 CS-SS-S--EEEEEEEEETT CS
         PDT 163 eniedkknntTRFlvlakee 182
                 ++i+dkk ntTRFlvl++++
  CCD25929.2 210 NEINDKKGNTTRFLVLQRRD 229
                 *****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       477  (0.0266049); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 2545.67
//
Query:       CCD25930.2  [L=319]
Description: hypothetical protein NDAI_0G01540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-89  300.8   2.8    1.4e-89  300.6   2.8    1.0  1  ATP11     ATP11 protein
     0.0063   16.7   0.5      0.015   15.4   0.5    1.6  1  SH3BGR    SH3-binding, glutamic acid-rich protein


Domain annotation for each model (and alignments):
>> ATP11  ATP11 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.6   2.8   1.5e-93   1.4e-89       2     272 .]      45     311 ..      44     311 .. 0.90

  Alignments for each domain:
  == domain 1  score: 300.6 bits;  conditional E-value: 1.5e-93
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---.......SS--HHHHS-HHHHTTS CS
       ATP11   2 vlekYreKLeqkakeeglesieeLkeaykdkieekrkeaaaidleesksesekekeakasssektekkesaakskkkskskspvkpLssildleklkel 100
                 +++ Y+eKL +ka+eeg+++ie+L+++ k+ ieek+k+ ++id  +   e+ ++k ++++++  t++k +  +  +++k k p+k+L s+l+lek++el
  CCD25930.2  45 IQQNYKEKLLKKAQEEGFQTIEKLQNHWKNIIEEKKKQFNKIDILKD-LEEYQQKMSNNNATGFTKSKGPLPA--EDKKLKVPFKTLGSYLQLEKITEL 140
                 6789***********************************99995555.2333333333333333333333333..6899******************** PP

                 -HHHHHHHHHHHTTT-SSEEEEEEETTTHHHHHHHHHH--EEEEEEE-----.--..-EEEEEEEEEE..EETTEEEEEEEETTTTTT-HHHHS-SEEE CS
       ATP11 101 pakeiealWrarhaskeeslcAvipaetYekmlatarkypqFvlPlpreeqe.ekeegaElhflqwafhepaektstvlfTsLaeYklrgefAqphttl 198
                 +++eie+lWra++a++++slcAv+p+++++kml +a+ +p FvlPlpr   e ++ eg+Elh++qw+f    ++t ++++TsLaeYkl+ efA+phtt+
  CCD25930.2 141 SKQEIEFLWRAKWAATKDSLCAVVPVDIFNKMLGNAKANPVFVLPLPRVVGEgKEPEGMELHYIQWQF--LGSNTIHCIITSLAEYKLHTEFARPHTTF 237
                 ************************************************555467889***********..689************************** PP

                 EEE-TTHHHH-EEEEEEEE-TTSS--HHHHHHHHHHHHHHTTGGG--SHHHHHHHHHHHHHHHT-TT--HHHHH CS
       ATP11 199 thytdLaeskglVLmrGevtedrglsveeAqlLvlalqrFYgaeaeekeeakerekLLedFtkgdeeFkveeLi 272
                 ++++dL+++k++VLm+G+v++d ++sv++AqlL+l++qrFYga++ee+  aker k+L+dFtkg++ F+v++Li
  CCD25930.2 238 QFHLDLESEKKIVLMNGHVQTDMNVSVQDAQLLLLNIQRFYGAMGEETPMAKERLKILRDFTKGSTAFNVDTLI 311
                 ********************************************99**************************98 PP

>> SH3BGR  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.5   1.7e-06     0.015      10      59 ..      59     109 ..      52     119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-06
                 S-SSHHHHHHHHHHHHHHHHTT--EEEEETTT.-HHHHHHHHHCST-CCCS CS
      SH3BGR  10 ssgskeikkkqqevlriLdakkiefdevDitk.deeerelmrenaapeekk 59 
                   g++ i k q++  +i++ kk +f+++Di k  ee ++ m +n a+   k
  CCD25930.2  59 EEGFQTIEKLQNHWKNIIEEKKKQFNKIDILKdLEEYQQKMSNNNATGFTK 109
                 578999*************************96577778888777533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1783  (0.0994478); expected 358.6 (0.02)
Passed bias filter:                      640  (0.0356964); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2267.99
//
Query:       CCD25931.2  [L=290]
Description: hypothetical protein NDAI_0G01550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-75  251.2   0.0    9.9e-75  250.9   0.0    1.1  1  Prenyltransf  Putative undecaprenyl diphosphate synthase


Domain annotation for each model (and alignments):
>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.9   0.0   5.5e-79   9.9e-75       1     219 [.      41     261 ..      41     265 .. 0.93

  Alignments for each domain:
  == domain 1  score: 250.9 bits;  conditional E-value: 5.5e-79
                   EE--HHHHHHHTT.S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEGGGGGS-HHHHHHHHHHHH...HHHHHHHHHHHHHT.TEEEEEESSGG CS
  Prenyltransf   1 imDGNrRwAkkrgleereeGhkaGaealkeilelclelgvkvvtvYafSteNfkRskeevdalmellk...eellkeelkellke.gvrvrviGdle 93 
                   imDGNrR+A+k+g+e +e Gh+ G+ ++++ilelc+e+gv++ tvYafS+eNfkRs++evdalm+l++   +++++++  e++++ g++v++iGd++
    CCD25931.2  41 IMDGNRRYARKNGIEVKE-GHETGFFTMSKILELCYESGVTCATVYAFSIENFKRSPYEVDALMNLARlriKQIVDKG--EMAEKyGIKVKIIGDTS 134
                   9************88777.************************************************98888899888..777777*********** PP

                   GS-HHHHHHHHHHHHHHT.TTTSEEEEEEEEE-HHHHHHHHHHHHHHTT..SSSG.GGHSHHHHHCTSTT..TSSS-SEEEEESS--S-TTSSTTTT CS
  Prenyltransf  94 llpedvlealekaeeatkknnkklvlniavnYgsrdeiveavrelvkekseekkk.eeideetlekhlytakalpdpDlliRtsGeeRlSnFllwql 189
                   ll++d+ + +++a+e tk+nn+ ++lni+++Y++r+ei ++++e++++++++ +   +i+e+ l+ +lyt  + p++DlliRtsG+ RlS+F+lwq+
    CCD25931.2 135 LLDADLIKDIQNAMEITKNNNR-AILNICFPYTGREEIYHSMKECMAKYCDNGEPeFKINESSLDLNLYTGGE-PPLDLLIRTSGVARLSDFMLWQI 229
                   ******************5555.**********************9999977666256789********9777.**********************9 PP

                   TT-E..EEEESSSGGG--HHHHHHHHHHHHHC CS
  Prenyltransf 190 ayse..lyfldvlWPdfskedllealleyqkr 219
                   +++   +  +d+lWPdf+  ++ ++ll+++ +
    CCD25931.2 230 SNKGvvIELIDCLWPDFGPLRMAWILLKFAFQ 261
                   888887889********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2204.41
//
Query:       CCD25932.2  [L=287]
Description: hypothetical protein NDAI_0G01560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-58  196.6   0.3    2.9e-58  196.2   0.3    1.2  1  Pyrophosphatase  Inorganic pyrophosphatase


Domain annotation for each model (and alignments):
>> Pyrophosphatase  Inorganic pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.2   0.3   1.6e-62   2.9e-58       1     160 []      46     228 ..      46     228 .. 0.96

  Alignments for each domain:
  == domain 1  score: 196.2 bits;  conditional E-value: 1.6e-62
                      EEEEE-TTCSEEEEEETTT...........TEEEEEEE-SSSB-BSSEEEEETT--BT.......CCBEETSSSEEEEEESSS---TTEEEEEE CS
  Pyrophosphatase   1 vvvEiprgsnaKyeidkee...........gklrldrvlftskgypanYGfipqTled.......telkGDgDPlDvlvlgeeplspgevvevk 76 
                      +vvEipr++naK+ei+kee           gklr++r++f+++gy++nYG++pqT+ed       t++ GD+DP+Dvl++ge+ +++g+v++vk
       CCD25932.2  46 MVVEIPRWTNAKLEITKEEplnpiiqdtkkGKLRFVRNCFPHHGYIHNYGAFPQTWEDpnethaeTKAVGDNDPIDVLEIGETIAYTGQVKQVK 139
                      8********************************************************************************9999********* PP

                      EEEEEEEEETTEEEEEEEEEETTSGGGTT-SSGGG....STHHHHHHHHHHHHHTTTTSCCT-SE.EEE.EEEEHHHHHHHHHHHHHHHH CS
  Pyrophosphatase  77 vlGvlamiDegetDdKiiavpvkdprlkkindied....lpgllleeiehfFetykdlegkkknv.kve.ewkdkeeAekvieeaheryk 160
                      vlGv+a++DegetD+K+ia++ +dp   k+ndied    +pgll ++++++F+ yk+++gk +n+ +++ e k+k++A+++i+e+ e++k
       CCD25932.2 140 VLGVMALLDEGETDWKVIAIDINDPLAPKLNDIEDvekyFPGLL-RATNEWFRIYKIPDGKPENQfAFSgEAKNKKYALDIIRETNESWK 228
                      *************************7799999999888777777.***************966888**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       370  (0.020637); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2120.59
//
Query:       CCD25933.2  [L=227]
Description: hypothetical protein NDAI_0G01570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-54  184.3   0.1    2.4e-54  184.1   0.1    1.0  1  PRAI      N-(5'phosphoribosyl)anthranilate (PRA) isomerase


Domain annotation for each model (and alignments):
>> PRAI  N-(5'phosphoribosyl)anthranilate (PRA) isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.1   0.1   1.3e-58   2.4e-54       2     193 ..      17     223 ..      16     224 .. 0.94

  Alignments for each domain:
  == domain 1  score: 184.1 bits;  conditional E-value: 1.3e-58
                 CE----SHHHHHHHHHHTSSEEEEE--TTBTTB--HHHHHHHCCCS--E.......EEEEESSS-HHHHHHHHHHCTECEEEE-CGG.-HHHHHHHHHH CS
        PRAI   2 kicgltrasdvkaavkagadelglifaesskrevseeqaqellekvpak.......lVGVfvNqpieevlriaqelgldvvQLHGdedeqeyeellkte 93 
                 kicg+++ + +k a+++g++ lg+i +++ kr + +  a+++++ ++ +       lVGVf+Nq++e+v+ri++++g+d+vQLHGded++ey+e+l+  
  CCD25933.2  17 KICGIQTEEAAKCAINSGTNLLGIICVPNRKRTIMPDIARSISSFIHDQdekqlqyLVGVFRNQSKEDVSRIVEDYGIDIVQLHGDEDWEEYYEFLQ-- 113
                 89*****************9********9999999999998877666444556889*****************************************.. PP

                 S-TTSEEEEEEE-S.SS--S-SSTT-..SEEEEESSS-SSSXXXXGGGGTTSXX........TTEEEESSXXTTTHHHHHT.TXXSEEEEXGGGEEETE CS
        PRAI  94 lpvikalkvaesvd.evkearradhv..dllllDsgaGGtGelldwsliskllks.......lkviLAGGLtpeNvaeaiklegvlgvDvssGVEtnGv 182
                  p+ik++ +++++d ++++++ +++   +l+l+Ds+aGGtG  ldw++is++ k+       +++iL GGL peNv++a+ l+gv+g Dvs+GVEt+ v
  CCD25933.2 114 KPIIKRMIFPRDCDdVIQICNSDNKLrkVLPLFDSEAGGTGDILDWNAISQWAKNeigkgnkVEYILTGGLVPENVQKAVSLSGVIGADVSGGVETDEV 212
                 **************9899999888888899***********************999****9999*********************************** PP

                 EXHHHHHHHHH CS
        PRAI 183 kDlekirkfvq 193
                 kD eki++f+ 
  CCD25933.2 213 KDMEKIKSFIA 223
                 *********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1649.71
//
Query:       CCD25934.2  [L=136]
Description: hypothetical protein NDAI_0G01580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-49  167.4   3.6    2.1e-49  167.2   3.6    1.0  1  Histone         Core histone H2A/H2B/H3/H4
    1.9e-06   28.1   0.0      3e-06   27.5   0.0    1.2  1  CENP-S          CENP-S protein
    0.00013   22.1   1.1    0.00014   21.9   0.2    1.6  2  CENP-T_C        Centromere kinetochore component CENP-T histo
    0.00035   21.2   2.5    0.00046   20.8   2.5    1.2  1  PAF             PCNA-associated factor histone like domain
     0.0017   18.6   0.9     0.0023   18.2   0.1    1.6  2  CBFD_NFYB_HMF   Histone-like transcription factor (CBF/NF-Y) 
  ------ inclusion threshold ------
      0.034   14.2   0.2      0.057   13.5   0.0    1.5  2  TFIID-31kDa     Transcription initiation factor IID, 31kD sub


Domain annotation for each model (and alignments):
>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.2   3.6     7e-53   2.1e-49       1     131 []       1     132 [.       1     132 [. 0.99

  Alignments for each domain:
  == domain 1  score: 167.2 bits;  conditional E-value: 7e-53
                 XXEESXEEEXXXXEEXXXXXXXXXXHT.TS-SSSSB--TTT-XTTHHHHHHHHHHHHXXSXXSXHHHHHHHHHHHH.TTSSSXEEXHHHHHHHHHHHHH CS
     Histone   1 marekekarkesektapekkvsakker.kasskskkkkkrryrpgtvalkeirkyqkstdlliqklpfaRvvreivksekedlrisaeavlalqealEa 98 
                 mar+k++ark+++++ap+k++++k +r +a+s+   kk++ry+pgtval+eir+ qkst+lli+klpf+R+vrei +++k+dlr++++a+ alqe +Ea
  CCD25934.2   1 MARTKQTARKSTGGKAPRKQLASKAARkSAPSTGGVKKPHRYKPGTVALREIRRLQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEA 99 
                 9************************************************************************************************** PP

                 HHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHHT CS
     Histone  99 llvelfeeAnllakhaKRvTitpkDiqlArrlr 131
                 +lv+lfe++nl+a+haKRvTi++kDi+lArrlr
  CCD25934.2 100 YLVSLFEDTNLAAIHAKRVTIQKKDIKLARRLR 132
                 *******************************97 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0     1e-09     3e-06      13      71 ..      70     130 ..      65     133 .. 0.85

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1e-09
      CENP-S  13 kiveeeaa..ekeveatkqfiaaltelvykqlenlakDLeaFakHAkRstittdDvlLlaR 71 
                 ++v+e+a+  ++++++ +++i+al e v + l +l +D ++ a HAkR ti+++D++L  R
  CCD25934.2  70 RLVREIAQdfKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLARR 130
                 556665442366778999***************************************9876 PP

>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.4   7.3e+03      14      25 ..      19      30 ..      14      39 .. 0.59
   2 !   21.9   0.2   4.7e-08   0.00014      11      75 ..      70     129 ..      50     135 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 2.4
    CENP-T_C 14 kklakrfakasg 25
                k+la+++a++s+
  CCD25934.2 19 KQLASKAARKSA 30
                445555555544 PP

  == domain 2  score: 21.9 bits;  conditional E-value: 4.7e-08
    CENP-T_C  11 avvkklakrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmk 75 
                  +v+ +a++f     +  + + +a+ al+++ + ++  + eD +  a Ha+R ti+++D+ l  +
  CCD25934.2  70 RLVREIAQDF----KTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKL-AR 129
                 3455566666....56799****************************************864.44 PP

>> PAF  PCNA-associated factor histone like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   2.5   1.5e-07   0.00046       1      61 [.       1      57 [.       1      67 [. 0.84

  Alignments for each domain:
  == domain 1  score: 20.8 bits;  conditional E-value: 1.5e-07
         PAF  1 mVRTkAdvssarkavaakAprkslgassssssssssspkkkkkkyvGGNpvcpRptPaWQK 61
                m RTk ++   rk  ++kAprk+l+++   +s+ s++  kk + y +G  v  R++   QK
  CCD25934.2  1 MARTKQTA---RKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPG-TVALREIRRLQK 57
                99******...***************9999999988877777777777.466666655555 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       4.8   1.4e+04      39      46 ..      20      27 ..      19      29 .. 0.58
   2 !   18.2   0.1   7.6e-07    0.0023       2      64 ..      65     128 ..      64     128 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 4.8
                   HHHHHHHH CS
  CBFD_NFYB_HMF 39 elaseAae 46
                   +las+Aa+
     CCD25934.2 20 QLASKAAR 27
                   46666664 PP

  == domain 2  score: 18.2 bits;  conditional E-value: 7.6e-07
                    XXXHHHHHHHHHCC.TTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHH CS
  CBFD_NFYB_HMF   2 eLPiarvkkImksd.pdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklA 64 
                    +LP  r  + + +d + + ++ ++A   ++e+ve ++ +l + ++  + ++kr ti++++iklA
     CCD25934.2  65 KLPFQRLVREIAQDfKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLA 128
                    78888887777777799999******************************************98 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.4   7.1e+03      73      90 ..      10      27 ..       4      32 .. 0.64
   2 ?   13.5   0.0   1.9e-05     0.057      22      67 ..      84     129 ..      66     136 .] 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.4
  TFIID-31kDa 73 kqfkepppkelLlelAae 90
                 k+  ++ p++ L + Aa+
   CCD25934.2 10 KSTGGKAPRKQLASKAAR 27
                 455556777777776655 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.9e-05
  TFIID-31kDa  22 eyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAi 67 
                   +++  +  L + +  y +s++ed ++ a hak+ +++ +d++lA 
   CCD25934.2  84 RFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKDIKLAR 129
                  578888889999999*****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       447  (0.0249317); expected 358.6 (0.02)
Passed bias filter:                      279  (0.0155614); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 998.57
//
Query:       CCD25935.2  [L=103]
Description: hypothetical protein NDAI_0G01590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-09   37.6   0.1    2.2e-09   37.4   0.1    1.2  1  CENP-T_C       Centromere kinetochore component CENP-T histon
    1.4e-05   25.4   0.2    1.7e-05   25.2   0.2    1.2  1  Histone        Core histone H2A/H2B/H3/H4
    1.9e-05   24.9   0.1    3.2e-05   24.1   0.0    1.5  1  CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) a
    2.5e-05   24.4   0.1    3.4e-05   23.9   0.1    1.3  1  TAF            TATA box binding protein associated factor (TA
    0.00016   22.0   0.1    0.00022   21.6   0.1    1.4  1  CENP-S         CENP-S protein
     0.0028   17.7   0.0     0.0034   17.4   0.0    1.1  1  TFIID-31kDa    Transcription initiation factor IID, 31kD subu
     0.0093   16.0   0.0      0.013   15.5   0.0    1.2  1  Bromo_TP       Bromodomain associated
  ------ inclusion threshold ------
      0.049   14.1   0.0      0.081   13.4   0.0    1.4  1  TFIID_20kDa    Transcription initiation factor TFIID subunit 


Domain annotation for each model (and alignments):
>> CENP-T_C  Centromere kinetochore component CENP-T histone fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.1     1e-12   2.2e-09      17      79 ..      34      96 ..      18      99 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 1e-12
    CENP-T_C 17 akrfakasgskaklekealkalekasdkffeqvgeDLeayakHagRKtidesDvilLmkrqrk 79
                a r   ++g  ++++   ++ +  +++ f+e v +D  +y++Ha+RKt+ + Dv+  +krq++
  CCD25935.2 34 AIRRLARRGGVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96
                444444456777999999*******************************************86 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.2   7.5e-09   1.7e-05      78     129 ..      41      92 ..      16      94 .. 0.85

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 7.5e-09
                 TSSSXEEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHH CS
     Histone  78 ekedlrisaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArr 129
                 ++  +ris+   + + ++l+ +l+++  +A  +++haKR+T+t+ D+  A++
  CCD25935.2  41 RGGVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92 
                 5666777777777788999****************************99987 PP

>> CBFD_NFYB_HMF  Histone-like transcription factor (CBF/NF-Y) and archaeal histone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.4e-08   3.2e-05       8      65 .]      35      91 ..      28      91 .. 0.90

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.4e-08
                   HHHHHHCCTTXS-B-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCE-HHHHHHHH CS
  CBFD_NFYB_HMF  8 vkkImksdpdarkiakdAkeliaecveefieelaseAaeickkekrKtikaehiklAv 65
                   ++++ +   ++++i+    e +  ++++f+e++ + A+ +++++krKt++  ++  A+
     CCD25935.2 35 IRRLARRG-GVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYAL 91
                   77888888.888999999999999*****************************98876 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   1.5e-08   3.4e-05       5      66 .]      31      92 ..      27      92 .. 0.85

  Alignments for each domain:
  == domain 1  score: 23.9 bits;  conditional E-value: 1.5e-08
                -HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  5 pkesvkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                +k +++ +A   G++ +s    +++   ++  l  ++++a+ +++h+kR++ t+ Dv +AL+
  CCD25935.2 31 TKPAIRRLARRGGVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALK 92
                66677888888888888877777777778888999*************************98 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   9.6e-08   0.00022      41      73 ..      62      94 ..      21      97 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 9.6e-08
      CENP-S 41 qlenlakDLeaFakHAkRstittdDvlLlaRrn 73
                 le++ +D  ++ +HAkR+t+t  Dv+  ++r+
  CCD25935.2 62 FLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                3889999*******************9998885 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06    0.0034      13      70 ..      37      94 ..      31     101 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 1.5e-06
  TFIID-31kDa 13 liLaslgvteyeerVvlqLldfayrytssvLedAkvlaehakkkevslddvrlAiqsr 70
                  + +  gv+ ++  +++ +  +   +  sv++dA ++ ehak+k+v+  dv  A++ +
   CCD25935.2 37 RLARRGGVKRISGLIYEEVRAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                 55566678888888888888889999*************************9998865 PP

>> Bromo_TP  Bromodomain associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     6e-06     0.013      33      70 ..      56      93 ..      43      97 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 6e-06
                HHHHHHHHHHHHHHHHHHHTTSS-SS--HHHHHHHHHH CS
    Bromo_TP 33 teiaqkYirelgeqaksfaehagRseptlkDvvltLqe 70
                + +++++++++ ++a  + eha R ++t  Dvv +L++
  CCD25935.2 56 RAVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93
                678999******************************97 PP

>> TFIID_20kDa  Transcription initiation factor TFIID subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   3.6e-05     0.081      30      65 ..      59      94 ..      43      95 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 3.6e-05
                 HHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHHH CS
  TFIID_20kDa 30 addFvesvtkfacklakhRksdklevrDiqlhlern 65
                    F esv+  a+    h k +++ + D+ + l+r+
   CCD25935.2 59 LKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94
                 567*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 796.84
//
Query:       CCD25936.2  [L=344]
Description: hypothetical protein NDAI_0G01600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-60  204.0   0.0    3.3e-60  203.8   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
        0.1   13.2   0.1        2.1    9.0   0.0    2.7  2  DUF5600       Domain of unknown function (DUF5600)
       0.14   13.1   0.0         16    6.5   0.0    2.6  2  DUF2624       Protein of unknown function (DUF2624)


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.8   0.0   5.4e-64   3.3e-60       1     291 [.      19     335 ..      19     338 .. 0.90

  Alignments for each domain:
  == domain 1  score: 203.8 bits;  conditional E-value: 5.4e-64
                   .EEEE-SSS-ST...TS-HHHHHHH...HHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE....................-- CS
  Aldo_ket_red   1 elglGtwqlgsk..eeiskeealel...lrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv....................dl 72 
                   +l++G +++gsk   ++ ++++ ++    +++++ G+++fDtA+vY +g+se+llGe+l k + +re+v+i tK                     d 
    CCD25936.2  19 PLIVGCMSYGSKawAQWVEDDKEKIfqiFKHCYDIGFRTFDTADVYSNGKSERLLGEFLRKFEIRRETVVILTKTyfrvdetldlplgefphsenDV 115
                   6999**********55555555544444*******************************************************************9* PP

                   SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEE...S--HHHHHHH.HHTTT--EEEEE-B-B CS
  Aldo_ket_red  73 rdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvS...nfsveqleka.kkkkkvkivavqveyn 165
                    d  +++gls+++i  s+++s+ rLgt y+D+l++Hr dp++p i e+++al+++v+ G +r+iG S    ++   ++++  k    ++v vq +yn
    CCD25936.2 116 LDLVNQQGLSRKHILDSVKNSVGRLGT-YIDVLQIHRFDPTTP-IKETMKALNDVVENGDVRYIGASsmlPTEFVEMQAIaDKYDWFQFVNVQSQYN 210
                   **************************6.***************.***********************55545544555557999999********** PP

                   TT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS---SSSCCC-------.TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEE CS
  Aldo_ket_red 166 llreleeegllelckkkgvpliaysplggGlltgkyqseedkedkeprkdlkrd.ertsknldaaeelselakehgvslaqlalryalsqpavgivi 261
                   ll +++e+ l ++ckk++++l ++sp  +Gllt+ +  e+   ++++  d  +  +  + + + +++++el k++gv +a+++ ++++   ++  +i
    CCD25936.2 211 LLYREDERDLMKYCKKHNIALTPWSPNYQGLLTRPVGVESTRSKTDKVIDAWHLkNLDPAQKEIINRVEELSKKKGVAMAAISTAWVM--AKGCQPI 305
                   *********************************87766555555444444433346777888899***********************..9****** PP

                   E--SSHHHHHHHHGGGG----HHHHHHHHH CS
  Aldo_ket_red 262 pgasnieqlednldalelklseeevaelde 291
                   +g+s+i+++++  dal++k++eee+a+l+e
    CCD25936.2 306 LGMSSIKRVDEAKDALDVKFTEEELAYLEE 335
                   **************************9987 PP

>> DUF5600  Domain of unknown function (DUF5600)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00034       2.1      39      70 ..      81     112 ..      62     129 .. 0.85
   2 ?    0.6   0.0      0.14   8.6e+02      71      99 ..     254     282 ..     250     288 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00034
     DUF5600  39 kkkkeLieelpeiyekvsrkhnlplgdFPdve 70 
                 + ++e +  l + y  v ++++lplg+FP+ e
  CCD25936.2  81 EIRRETVVILTKTYFRVDETLDLPLGEFPHSE 112
                 456777778999*****************976 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.14
     DUF5600  71 kfkeklkaldftkfkklkpkliealdell 99 
                 k  +++ a++++++ + +++ i++++el 
  CCD25936.2 254 KTDKVIDAWHLKNLDPAQKEIINRVEELS 282
                 56788999999999999999999999875 PP

>> DUF2624  Protein of unknown function (DUF2624)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0026        16      18      33 ..     218     233 ..     216     235 .. 0.91
   2 ?    3.6   0.0      0.02   1.2e+02      27      59 ..     246     278 ..     242     291 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0026
     DUF2624  18 eellkyakqygveltk 33 
                  +l+ky k++++ lt+
  CCD25936.2 218 RDLMKYCKKHNIALTP 233
                 69************95 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.02
     DUF2624  27 ygveltksqAekivkilrekkidifnkeerkkl 59 
                  gve t+s ++k+++    k++d+ +ke ++++
  CCD25936.2 246 VGVESTRSKTDKVIDAWHLKNLDPAQKEIINRV 278
                 57899*******************998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      426  (0.0237604); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2743.52
//
Query:       CCD25937.2  [L=834]
Description: hypothetical protein NDAI_0G01610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-74  250.7   1.4      3e-74  250.7   1.4    1.7  2  Tcp11     T-complex protein 11


Domain annotation for each model (and alignments):
>> Tcp11  T-complex protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.5     0.075   1.3e+03     249     348 ..      50      78 ..       3     165 .. 0.49
   2 !  250.7   1.4   1.7e-78     3e-74       1     389 [.     291     751 ..     291     794 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.075
       Tcp11 249 e...................fPetLalDhaRLrelradlrqlvvlasclllfkqlvkrdvsssvsrsslkklkeeilalledeesesgerwtesialei 328
                 +                   +                                                                              
  CCD25937.2  50 TtsantmiknsnvgngimkhV------------------------------------------------------------------------------ 70 
                 122222222222222222222.............................................................................. PP

       Tcp11 329 arevskslkessalpd..empe 348
                               pd   + e
  CCD25937.2  71 --------------PDtvLNDE 78 
                 ..............22232222 PP

  == domain 2  score: 250.7 bits;  conditional E-value: 1.7e-78
       Tcp11   1 LrheilfDpelqfrpnld........geegrvketmakayWdaleeele.................kdppdysrllallkelrdiLlslvp........ 66 
                 Lrh+++fDp l+f+pn d        ++     ++  k yW+ ++ el+                 k++++ + l++l+++l++iLl++vp        
  CCD25937.2 291 LRHDLIFDPFLKFKPNQDqdqaqapnDKSYLESQDQSKLYWNFIRVELAlsantsslspathntlvKKAQSSKLLFNLFETLKKILLTIVPeakyvpta 389
                 8*****************8887777644446678899*****************************778899******************888899999 PP

       Tcp11  67 ..............nslrqeieevLDldlleqqlekgvldleklaewlanllkklCAPmRDeevdkmvekis......easeessvdklVegLrelfei 145
                                s  ++i   +D  l+ q+l  gv+d++k+++w+ +ll+k CAP+RD+ +  ++++++      ++++  s++k+V++L ++f+i
  CCD25937.2 390 sspfnnnnnsqeetHSIFTSIITDFDANLIVQELYLGVFDIPKFSTWITTLLRKCCAPIRDPLIGYIEQNFQsiftndDNNTVISISKFVDCLNQIFKI 488
                 99********988888888999999***********************************************9**9998999999************** PP

       Tcp11 146 LelMklDvaNhqirllrplLietaveyErkkFqerlesgk.islestrkWlrka......rekleaesserdpesss.ssssassspspskvliqglld 236
                 L lMklD++N+ +rl+rp L+  ++++E+++F+++++ ++   ++st++W++++      r  l++e  e d+ ++s   ++ ++++  ++++ +++l+
  CCD25937.2 489 LKLMKLDIVNYELRLFRPNLLLYTIDFEKNYFEKLYQFDScQIMNSTLAWFQENldnekkRLILKNEVVEGDNANVSvI-PQEKNQFY-YRLFLKSVLN 585
                 ************************************6555266799*********999887778888888888888844.55566666.********** PP

       Tcp11 237 llsssadpsseeefPetLalDhaRLrelradlrqlvvlasclllfkqlvkrdvsss.......vsrsslkklkeeilalledeesesg.erwt...esi 324
                 lls+ +  +  e+fPe + +D ++L +lr d+rq+++ ++c +l++ +v+rd++ s        s++ ++++ + i ++++++   +g ++w    +si
  CCD25937.2 586 LLSCCN-IV--EKFPEGFFFDFDKLVLLRVDVRQMICQYICKMLYETMVRRDTHISpmdktylLSKKATNQVINGIDTIIKNK---NGhCKWSnniNSI 678
                 ****84.33..47****************************************999999999988899999999999999997...7889***888889 PP

       Tcp11 325 aleiare...........vsksl..kessalpdempeaakawLskqlqkvlsksdpvfkllesrvrkalearllassa 389
                 +++++             +  s+  ++s +l+ +m+e+ ++wL++q++++    ++++++le+++ +ale+ ++++s+
  CCD25937.2 679 SVQLCYWvqsyykeninmS-ASSpsSSSMKLDGKMVEFCNNWLTRQFNPS----SKIYTMLENKLLSALEEIIFEGSE 751
                 9999999999999998752.3332234444444****************5....66******************9443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1401  (0.0781416); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.28s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5637.12
//
Query:       CCD25938.2  [L=739]
Description: hypothetical protein NDAI_0G01620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-10   41.4   2.2    0.00019   22.0   0.0    3.5  3  Sel1      Sel1 repeat


Domain annotation for each model (and alignments):
>> Sel1  Sel1 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   4.6e-06     0.082       4      38 .]     574     604 ..     570     604 .. 0.74
   2 !   22.0   0.0     1e-08   0.00019       2      38 .]     644     679 ..     643     679 .. 0.92
   3 !    3.8   0.0    0.0057     1e+02      20      35 ..     700     715 ..     683     717 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.6e-06
        Sel1   4 myrLGmfylylnGlgvpkDpekAiewyekAAeqGd 38 
                 +y L+  +   +G gv++D+++ ++++++A   Gd
  CCD25938.2 574 LYGLA--L--RYGCGVEQDYDESFKYLQLAITSGD 604
                 24444..5..44447***************98886 PP

  == domain 2  score: 22.0 bits;  conditional E-value: 1e-08
        Sel1   2 eAmyrLGmfylylnGlgvpk.DpekAiewyekAAeqGd 38 
                  A+y  G    yl+G gv+  D+ k+++++ekAA++G+
  CCD25938.2 644 PALYECG--ISYLKGFGVEHvDEMKGLKFLEKAASLGH 679
                 699****..666********99***************9 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.0057
        Sel1  20 pkDpekAiewyekAAe 35 
                 +kD  +A  w+++A +
  CCD25938.2 700 KKDTVRAAAWFRLAEM 715
                 67***********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1770  (0.0987227); expected 358.6 (0.02)
Passed bias filter:                      294  (0.016398); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 4682.66
//
Query:       CCD25939.2  [L=499]
Description: hypothetical protein NDAI_0G01630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.4e-157  522.8   0.0   7.2e-157  522.6   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
    0.00072   19.1   0.0     0.0012   18.3   0.0    1.2  1  DUF1487   Protein of unknown function (DUF1487)
  ------ inclusion threshold ------
       0.06   13.3   0.3        0.2   11.6   0.0    1.8  2  Wtap      WTAP/Mum2p family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  522.6   0.0  1.2e-160  7.2e-157       1     462 []      27     490 ..      27     490 .. 0.97

  Alignments for each domain:
  == domain 1  score: 522.6 bits;  conditional E-value: 1.2e-160
                 EET-SS.SE.EEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHHHHHHHHHHH CS
      Aldedh   1 wveses.et.ievinPatgeviakvpaataedvdaavaaAkeafkawaklpaeeRaeiLrkaadlleerkeelaeletletGkplaearaeveeaidvl 97 
                 w ++++ ++ +ev++Pa++e+iak+p+ t+++v++a++aA +af++++k++++eR++ L ++ +l+ e+ke+la+l+++e+Gk+l+e+r ev++a++++
  CCD25939.2  27 WLDPNNaKEyFEVTDPASNEIIAKMPEQTSANVEKAIDAAYRAFQTYRKTSPQERSKWLLNLYNLMIENKEDLAKLISWENGKSLEESRSEVQYAASYF 125
                 6666666666***************************************************************************************** PP

                 HHHHHHHHHHSEEEEEE.CTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE-..-SST CS
      Aldedh  98 ryyaelaeklegevlps.segklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvv..tgsg 193
                 +++ ++a++++g++++  +++++ ++ r+P+Gv+g+I+PWNfP +++++k+a+ala+G+tvv+KP ++tplsal+l +l e+ag+Pkgv+n++  + + 
  CCD25939.2 126 QWFSQEATRVYGTTIQPsNPTSRVFTIRQPVGVCGIICPWNFPSAMITRKMAAALAVGCTVVIKPDSQTPLSALALGKLQEQAGFPKGVVNIIlsHKNT 224
                 ************8888868**************************************************************************655668 PP

                 CCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHH CS
      Aldedh 194 sevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklvea 292
                  e+g++l+++ +v+kvsftGst+vg+ ++ +++++lk++++ElGG++p+i+++d+Dld+av++++++ f+  GQ+C++ +r++v++si d+f + l+e+
  CCD25939.2 225 PECGKTLCQSYRVKKVSFTGSTQVGKILMDQSSSTLKKLSFELGGNAPVIIFDDCDLDAAVNQTIASKFRGLGQTCVCSNRIYVHSSIIDKFADLLAEK 323
                 9************************************************************************************************** PP

                 HHT--BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEEE-TTE.SB-SSST.TEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHHHH CS
      Aldedh 293 akklkvgdpldedtdvGPliseaqlekvekyveeakeegaklllGgereeaglekg.yfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaieia 390
                 +kk+ +g +l++ ++ G +i+ ++ ek+e + ++a+++gak++l g    + ++ g +f++P +l++v++++ + +eE+FGP+ +++kf+++ee++ +a
  CCD25939.2 324 VKKFVIGPGLEDGVTHGCIINGKAIEKIEYHANDAIKKGAKIVLKG---GPLKDIGpNFYAPIILSHVPNNAVVSKEETFGPLCPIFKFDTLEEVVGYA 419
                 ********************************************66...34455555****************************************** PP

                 HSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 391 NdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 Ndte GLa++vf+k+++++ +v+e+leaG+v +N+ + ++a   pfgG+k+Sg+Greg+ +g+e+yt +kt+
  CCD25939.2 420 NDTELGLASYVFSKNVDTIYTVVEALEAGMVSCNTGIFSDAAI-PFGGIKESGFGREGSLHGIEDYTVLKTI 490
                 ************************************9999999.*************************996 PP

>> DUF1487  Protein of unknown function (DUF1487)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.1e-07    0.0012       8     167 ..     273     453 ..     270     458 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.1e-07
     DUF1487   8 mvifedgDlnsalealveslkePfaegavat..vlveesirdefvervrsklkpls.....eevaeHpsyl..kalekidelkaktisa.......... 87 
                 ++if+d Dl+ a+++ + s    +++  v +  + v+ si d+f +++++k+k++      e+  +H + +  ka+eki++   + i+           
  CCD25939.2 273 VIIFDDCDLDAAVNQTIASKFRGLGQTCVCSnrIYVHSSIIDKFADLLAEKVKKFVigpglEDGVTHGCIIngKAIEKIEYHANDAIKKgakivlkggp 371
                 69***************99999****99986569******************98642222255668999875579******999999988999999996 PP

     DUF1487  88 ksesakakasPilVldvthsflgdkptg...vvTlhtFrnakEvvkllakeslkfasvsvwneklaavyelvarlnvdvftiN 167
                  ++  ++  +Pi+   v+++ + +k  +   +  +  F + +Evv  ++  +l +as +v+++++ ++y +v++l+  ++  N
  CCD25939.2 372 LKDIGPNFYAPIILSHVPNNAVVSKEETfgpLCPIFKFDTLEEVVGYANDTELGLAS-YVFSKNVDTIYTVVEALEAGMVSCN 453
                 666678889*********99998865431226778999********99999999998.89***************98888776 PP

>> Wtap  WTAP/Mum2p family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.4e-05       0.2      46     119 ..      39     113 ..      27     139 .. 0.85
   2 ?   -1.3   0.0       0.3   1.8e+03      76      93 ..     237     254 ..     221     264 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 3.4e-05
        Wtap  46 llDPAvnlvfsrlrkel.eeaenkleeaqeeLqalkftpdsqtGkrLmakcrvLeqENeELgkvleegrvakLes 119
                 ++DPA n ++ ++ +++ +++e+++ +a    q+ + t   ++ k L++   ++ +  e+L+k ++ ++ ++Le+
  CCD25939.2  39 VTDPASNEIIAKMPEQTsANVEKAIDAAYRAFQTYRKTSPQERSKWLLNLYNLMIENKEDLAKLISWENGKSLEE 113
                 58***********87652799********************************************9988888875 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.3
        Wtap  76 LqalkftpdsqtGkrLma 93 
                  +++ ft   q Gk Lm 
  CCD25939.2 237 VKKVSFTGSTQVGKILMD 254
                 57889***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       673  (0.037537); expected 358.6 (0.02)
Passed bias filter:                      616  (0.0343577); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.45
# Mc/sec: 3333.41
//
Query:       CCD25940.2  [L=301]
Description: hypothetical protein NDAI_0G01640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-14   54.9   2.2    1.8e-14   54.4   0.0    2.3  3  RCR        Chitin synthesis regulation, resistance to Congo r
    0.00047   20.1   1.2    0.00092   19.1   0.0    2.0  2  TMEM154    TMEM154 protein family
  ------ inclusion threshold ------
      0.018   15.0   0.0       0.03   14.3   0.0    1.3  1  Colicin_V  Colicin V production protein
      0.034   14.0   0.0      0.063   13.1   0.0    1.5  1  TMEM51     Transmembrane protein 51
      0.057   13.7   1.4       0.14   12.5   1.4    1.6  1  DUF4064    Protein of unknown function (DUF4064)
       0.12   12.7   0.2       0.62   10.4   0.0    2.0  2  DUF3382    Domain of unknown function (DUF3382)
          2    8.4   5.1         19    5.2   4.9    2.6  3  PDGLE      PDGLE domain
        2.5    9.1   5.3        4.7    8.2   0.1    2.6  2  Pilin_N    Archaeal Type IV pilin, N-terminal
        2.9    7.9  10.4         15    5.6   5.7    2.4  2  DUF3439    Domain of unknown function (DUF3439)


Domain annotation for each model (and alignments):
>> RCR  Chitin synthesis regulation, resistance to Congo red
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.5   2.9e+03      49      49 ..      47      47 ..       2      83 .. 0.47
   2 !   54.4   0.0   9.2e-18   1.8e-14       3     119 .]      88     218 ..      84     218 .. 0.76
   3 ?   -2.0   0.1       2.7   5.4e+03      46      46 ..     259     259 ..     227     290 .. 0.49

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.5
         RCR 49 Y 49
                Y
  CCD25940.2 47 Y 47
                1 PP

  == domain 2  score: 54.4 bits;  conditional E-value: 9.2e-18
         RCR   3 vlfaiiivlillvllltlrvakrRrrrGlqplygtgWlvsapppPsYgqsqqqynqaes.ltsatvptytpnaneedaGyydqeGkfhe.......... 90 
                 v +a i+ ++ll+++++++++  R rr  +p++gt+W+      P+Y+  +++++ ++   +++ vp+yt++ n +d Gyyd++G fh+          
  CCD25940.2  88 VAIAGIVGAVLLIIIVFSIINSIRNRRKERPITGTSWI------PTYNVPSTDTTFKNCrDEEDFVPQYTERVNMNDLGYYDERGDFHRnedvrtydgn 180
                 567889999*****************************......***9877766656555789*************************97777766666 PP

         RCR  91 ....lqqPqqayqreesaees................eaeyqpPagppP 119
                     +++P+                              ++++P+g pP
  CCD25940.2 181 knsqIPPPA-----------FfpiadpafpssrsslpFSNFARPSGSPP 218
                 665533333...........03333333333344455778888888888 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 2.7
         RCR  46 p 46 
                  
  CCD25940.2 259 S 259
                 1 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   4.6e-07   0.00092      12      91 ..      36     117 ..      29     146 .. 0.79
   2 ?   -1.1   0.3      0.78   1.6e+03      12      23 ..     270     281 ..     243     299 .. 0.59

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 4.6e-07
     TMEM154  12 letatleeesadatsaasteseslkqeeakeslssaelsnesdqlel..vlmiiiPlvllillllvviiliqkkkrkrsKdd 91 
                 ++ +t++++ + at+a+  +  ++ + ++  +  s+   + +d+ e+     ++i  ++ ++ll+++++ i    r+r+K+ 
  CCD25940.2  36 GDRTTITTTRTYATTATQGTRTTIYTATSTSKVISQSYTDPEDSGEFgkWFGVAIAGIVGAVLLIIIVFSIINSIRNRRKER 117
                 556788888888888888888899989999999999999999***9999556666666666666666666656667777765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.78
     TMEM154  12 letatleeesad 23 
                 + t tl+++s++
  CCD25940.2 270 VTTSTLTTTSTN 281
                 112222222222 PP

>> Colicin_V  Colicin V production protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0   1.5e-05      0.03      54     131 ..      42     120 ..       9     131 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
   Colicin_V  54 lspalaaiiaflllfllvllivsllgallsklvsktglglldrllGaifGllkglllvv.llllllalvplpkvqewlq 131
                 ++++++a  a   + + ++ ++s   ++ ++++++   g + +++G+++  + g++l++ +++++++ + ++++++ ++
  CCD25940.2  42 TTTRTYATTATQGTRTTIYTATSTSKVISQSYTDPEDSGEFGKWFGVAIAGIVGAVLLIiIVFSIINSIRNRRKERPIT 120
                 56777777777777778888888889999999999999****************999999********99998866544 PP

>> TMEM51  Transmembrane protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.2e-05     0.063      41     136 ..      66     158 ..      52     187 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.2e-05
      TMEM51  41 anssskpdkdsgkeekksktssvAyV.LvGaGv.alLlLsicLgirdkkrarqeeeelaraqeslqeeeeeqeeeesaeeaasryavPsYeEvvtsge 136
                 +   s++ +d +++ +  k + vA+  +vGa + +++++si  +ir+++++r  + +  +  ++ ++ +++    + ++ ++++  vP Y E v++++
  CCD25940.2  66 SKVISQSYTDPEDSGEFGKWFGVAIAgIVGAVLlIIIVFSIINSIRNRRKERPITGT--SWIPTYNVPSTDT---TFKNCRDEEDFVPQYTERVNMND 158
                 3333334445555555568899988634554431445679999*****999966444..2233333333322...34455556667999999999876 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.4   6.9e-05      0.14      11      87 ..      12     117 ..      10     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.9e-05
     DUF4064  11 IGgilgillglllllflfllssgefsqeltee............................qalsgedasavleflstlli.vlgvialiaivlgivgal 80 
                 IG    +l+g++++++l  + +++ + +  ++                            + ++ ed+ ++  ++++ +  + g ++li+iv++i+ ++
  CCD25940.2  12 IGTGAALLAGVVGGFILGSNDDDDGDRTTITTtrtyattatqgtrttiytatstskvisqSYTDPEDSGEFGKWFGVAIAgIVGAVLLIIIVFSIINSI 110
                 89999999999999996666666655555555999***********99999999999776677777777777888777776667778999999998888 PP

     DUF4064  81 llkknkk 87 
                   +++ +
  CCD25940.2 111 RNRRKER 117
                 7776655 PP

>> DUF3382  Domain of unknown function (DUF3382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00031      0.62       9      37 ..      16      44 ..      10      62 .. 0.87
   2 ?   -0.4   0.0      0.72   1.4e+03      43      55 ..      92     104 ..      81     124 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00031
     DUF3382  9 aallalvlfvpilGlqleldgtrlvlepr 37
                aalla v+ ++ilG ++ +dg r++++++
  CCD25940.2 16 AALLAGVVGGFILGSNDDDDGDRTTITTT 44
                9*************************993 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.72
     DUF3382  43 iavavvfvgqLlr 55 
                  +v++v +  ++ 
  CCD25940.2  92 GIVGAVLLIIIVF 104
                 3333333333333 PP

>> PDGLE  PDGLE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3      0.28   5.5e+02      67      82 ..      12      27 ..       3      31 .. 0.56
   2 ?    5.2   4.9    0.0097        19      56      87 ..      72     106 ..      15     108 .. 0.55
   3 ?   -2.8   0.0         3     6e+03      50      64 ..     121     135 ..     112     138 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.28
       PDGLE 67 agtsvAgivGvlltla 82
                +gt+ A ++Gv+  ++
  CCD25940.2 12 IGTGAALLAGVVGGFI 27
                6666555555544444 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0097
       PDGLE  56 DYsfkgaeekk...agtsvAgivGvlltlalagli 87 
                  Y+ ++++ +     g  +AgivG++l++++++ i
  CCD25940.2  72 SYTDPEDSGEFgkwFGVAIAGIVGAVLLIIIVFSI 106
                 34433333322666999*************99876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 3
       PDGLE  50 ktalLpDYsfkgaee 64 
                  t+++p Y++++ ++
  CCD25940.2 121 GTSWIPTYNVPSTDT 135
                 489999999998876 PP

>> Pilin_N  Archaeal Type IV pilin, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1    0.0023       4.7      18      55 ..      18      56 ..      16      71 .. 0.69
   2 ?    1.4   1.9       0.3     6e+02       2      22 ..      89     106 ..      88     114 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0023
     Pilin_N 18 IlaAviaafvlgl.asneekapqasievkidssastgkn 55
                +la+v+++f+lg  +++  + + ++ + ++ ++a++g+ 
  CCD25940.2 18 LLAGVVGGFILGSnDDDDGDRTTITTTRTYATTATQGTR 56
                79**********975555555555555556666665544 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.3
     Pilin_N   2 AVSpViGviLmvaitvIlaAv 22 
                 A+  ++G++L++ i+   +++
  CCD25940.2  89 AIAGIVGAVLLIIIV---FSI 106
                 677899999987665...444 PP

>> DUF3439  Domain of unknown function (DUF3439)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   5.7    0.0075        15      47      74 ..      41      68 ..      37      87 .. 0.73
   2 ?    4.2   0.1     0.019        39      24      57 ..     247     280 ..     228     286 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0075
     DUF3439 47 ttttttttttttmpttttlptttkmsmv 74
                 ttt t +tt+t  t tt+ t+t  s v
  CCD25940.2 41 ITTTRTYATTATQGTRTTIYTATSTSKV 68
                3556666788899999999999998876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.019
     DUF3439  24 savdpdsakcsgsgkpvrsiicpttttttttttt 57 
                 s+v++ sa  s s k     +   tt+t ttt+t
  CCD25940.2 247 SQVEHLSAVPSNSPKYEIGKVKTVTTSTLTTTST 280
                 4466667777776665444443333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       949  (0.052931); expected 358.6 (0.02)
Passed bias filter:                      663  (0.0369792); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 2317.29
//
Query:       CCD25941.2  [L=305]
Description: hypothetical protein NDAI_0G01650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-11   44.3  12.4    2.4e-11   43.7  12.4    1.3  1  Pex2_Pex12  Pex2 / Pex12 amino terminal region
  ------ inclusion threshold ------
      0.011   15.6   1.7      0.018   15.0   1.7    1.2  1  FdhE        Protein involved in formate dehydrogenase formati
       0.15   12.0   8.7       0.27   11.1   8.7    1.4  1  zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
        2.9    7.9  11.4        9.4    6.3  11.5    1.9  2  zf-RING_5   zinc-RING finger domain


Domain annotation for each model (and alignments):
>> Pex2_Pex12  Pex2 / Pex12 amino terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7  12.4   5.4e-15   2.4e-11      26     207 ..      37     207 ..      13     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 5.4e-15
  Pex2_Pex12  26 ilnyfdEikllldlllelltlks.....gngTfgeefygLkrvssselkkrrllskrqrllsllllvlipYlkekldelysarerysaealsdearnsr 119
                  +++ +Eikl++++l++ +++k+       +T+g ++ g+                 ++  + ll++l  Y+ +kl++++              + n  
  CCD25941.2  37 RNKNTEEIKLIIKSLIFICSTKYsvlegVTRTYGSQLNGVSFK-------------CRKSSLYLLTILSDYFNKKLSHYF-------------FSSNPA 109
                 37799******************88776667**********99.............7777777777**************.............444444 PP

  Pex2_Pex12 120 eslkkrlkrlllklypfiealyellnlvlqllYL..sgky.....ysllkrllgi....ryvrlnpadq...rrnarrpsyeylnrqllwnalkellgl 204
                 +++    + +l+kly+ ++++y ++ l++ ++++  sg+       ++++rl++i      + l+   +   +++    ++ey+nrqllwna+ e+ + 
  CCD25941.2 110 STTL-HNQDILRKLYSRLSKIYDIAYLLNLCVFIssSGRTnknlyLTPIFRLFKIgsitDPIHLS---SssfYQDSIYGGLEYQNRQLLWNAILEVFNN 204
                 4444.6899***************************666555566**********5333333343...34559999999999**********8888776 PP

  Pex2_Pex12 205 lll 207
                 +ll
  CCD25941.2 205 TLL 207
                 665 PP

>> FdhE  Protein involved in formate dehydrogenase formation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   1.7   3.9e-06     0.018     146     227 ..     218     293 ..     187     302 .. 0.82

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.9e-06
                 HHHHHHHHHT--TTSSS-.-TT-SS-TTT---EEEEEEE-------EEEEEETTT--EEE--TTS-TTT---SS-EEE---- CS
        FdhE 146 qvvwtklaaaldakalaelaeekglCPvCgsaPvasvvriggeaeglRylhCslCeteWhvvRvkCsnCeetkelaylsled 227
                  ++  k+ ++++ak++++++++   CP C  +Pv          + +  + C +C + + + R  C nC+et++l+ +++ +
  CCD25941.2 218 YIMNNKRKKKVQAKKQQQTGDSGLQCPKCENFPVNPYR-----MTCCQGIYCYVCVS-YVLKRGYCLNCDETNDLSAQYIYH 293
                 56677888999**********************98753.....33455589****76.899**************9888755 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   8.7     6e-05      0.27       3      45 ..     241     282 ..     239     286 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6e-05
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT-- CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekllkrkkkCpiCrr 45 
                  +C+ C + p n   + C+  ++C+ C++ +l ++  C  C +
  CCD25941.2 241 LQCPKCENFPVNPYRMTCCQGIYCYVCVSYVL-KRGYCLNCDE 282
                 68*****************************5.6999****86 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.4     0.073   3.3e+02      34      43 ..     238     247 ..     231     248 .. 0.72
   2 ?    6.3  11.5    0.0021       9.4       2      43 ..     243     281 ..     242     282 .. 0.92

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.073
   zf-RING_5  34 ekeavCpiCr 43 
                  +  +Cp C+
  CCD25941.2 238 DSGLQCPKCE 247
                 56789****7 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0021
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkllekeavCpiCr 43 
                 C+kC +      ++ +t+C+ i+C  C++  l k+ +C  C+
  CCD25941.2 243 CPKCENFP--VNPYRMTCCQGIYCYVCVSYVL-KRGYCLNCD 281
                 99998777..999*******************.*****9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       992  (0.0553294); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2362.16
//
Query:       CCD25942.2  [L=457]
Description: hypothetical protein NDAI_0G01660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-81  275.4  33.7      1e-79  269.0  33.7    2.0  1  Mannosyl_trans2  Mannosyltransferase (PIG-V)


Domain annotation for each model (and alignments):
>> Mannosyl_trans2  Mannosyltransferase (PIG-V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.0  33.7   5.6e-84     1e-79       4     443 .]      13     457 .]      10     457 .] 0.88

  Alignments for each domain:
  == domain 1  score: 269.0 bits;  conditional E-value: 5.6e-84
  Mannosyl_trans2   4 llkyavlsrllvllLviLfrialipddtsealnppcllaspslvdslvekllen.lvsWDsvyflk.iaenG..yeyeheyaflpllplfvsl. 92 
                      l+  ++  r +++ L +  ++a+++++t ++l+ +    + s +ds++++ l+n l+sWDsvyf+k ++++   ++yeheyaf+p +   ++l 
       CCD25942.2  13 LTSIFITLRAIQYALLFFAPTAQFDTSTELLLSSLA---PDSDIDSFWNRHLWNkLLSWDSVYFIKgMTQHSsePQYEHEYAFSPTWVKLIRLi 103
                      77889***************************9877...899************************988887789************9999872 PP

  Mannosyl_trans2  93 lskevlaplvgllslravlvlsvfsls.illfllaavilsdvsvl...vlkareasfkasllfclspaavflasiYseaLfallafsgvysles 182
                      +sk+++  ++++l+++ ++ + +f +s  ll+ l+  ++ +   +   +  + + s  +s++f+ s+ ++f+ siYse+L++l +f+g+  +e 
       CCD25942.2 104 VSKQNNTEFYHILKVGIIMNNIIFFVStLLLYELTFQTFRNKKSIhysINDSLKLSNLSSIFFICSSCSGFVISIYSEPLSILGSFAGMLLREL 197
                      57999**********************8899****999987665512144556788999*******************************9999 PP

  Mannosyl_trans2 183 gi....sissvllfalsti..vrsnglvsvgflmfsllqrffe.aLielr...karkllkvliallLsvillflplvlfqyYa.YkqfClqrsa 265
                      +     s  s  l  l  i     + l++++++++ ll+ f+  +Li+     ++ ++ +++  ++L + +l+++++  qyY  Y++fC+    
       CCD25942.2 198 SLnsvlSS-SSTLGNLFYIgsCFGFILAAINRSNCILLGVFYLfDLIHGLkefRKTRISRMITLPILCGTVLGITFIWSQYYIpYNRFCTTS-- 288
                      88666522.33333333340144566899*************9999874401144567889999*************************988.. PP

  Mannosyl_trans2 266 GdevpWCksdvpl...........lYsyiqshYWgvGlLkYyelkqvPnfLlaaPvlilvvysilsyvksrpelflslGlqaseknkklekakd 348
                       ++++WC++ ++            +Ysyiq+ YW+vG+ kY++++++PnfL+  P+ i +v+s ++++k           +++ +n k      
       CCD25942.2 289 -NDMEWCQTSLFHiwglkqitktsMYSYIQNEYWNVGIFKYWTINNLPNFLIGLPNFICMVFSCIYFSK-----------IYPFNNMK------ 364
                      .899********99*******************************************************...........99999999...... PP

  Mannosyl_trans2 349 ltylsadvfvlvvhaavlvviaflimhvqvltrflsasPllyWfaadllqktd.........lkkkkwkplaedkivklliyWkacaayilLgt 433
                               +l++  ++++ i  +++h q+++r+ s+ Pl+ W+ ad+l k +         ++ k+    ++d ivk +i W+   ++i+L+t
       CCD25942.2 365 ---------PLIFVCSLFLCIILVLAHFQIINRINSFIPLHVWYIADRLLKQSrrtitnaneEEGKQIVLTGDDIIVKWYIRWLI--IWIPLQT 447
                      .........68999999999999***************************999888887765555555667899***********..******* PP

  Mannosyl_trans2 434 lLfanflPft 443
                      +Lf  flP++
       CCD25942.2 448 ILFGFFLPPA 457
                      ********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       758  (0.0422779); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3387.22
//
Query:       CCD25943.2  [L=215]
Description: hypothetical protein NDAI_0G01670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-53  180.0   1.6    1.8e-53  180.0   1.6    1.8  2  Ran_BP1   RanBP1 domain
    3.6e-05   23.7   1.1    0.00024   21.0   1.1    2.0  1  WH1       WH1 domain
     0.0043   16.7   4.1     0.0066   16.1   4.1    1.3  1  SR-25     Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> Ran_BP1  RanBP1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.6       0.3   1.8e+03      12      56 ..      50      66 ..      39      70 .. 0.56
   2 !  180.0   1.6     3e-57   1.8e-53       1     121 [.      91     212 ..      91     213 .. 0.99

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.3
                EEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTTEEEEEEEETT CS
     Ran_BP1 12 lfkqraKLfrfdaekkewkeRGvGdiKilkkkddekvRllmRrdq 56
                l                             kk+++k++ l Rr++
  CCD25943.2 50 LM----------------------------KKKKKKIKKLKRRQK 66
                33............................344455555555555 PP

  == domain 2  score: 180.0 bits;  conditional E-value: 3e-57
                 ----SSTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-TTS-EEESTTESSEEEEEE.EE-TTSSSEEEE CS
     Ran_BP1   1 evksgEEdEevlfkqraKLfrfdaekkewkeRGvGdiKilkkkddekvRllmRrdqvlkvcaNhvitkemklkplagsdrslvwta.adaadeeakleq 98 
                 +vk++EE+E++lfk raKLfrfd+e+kewkeRG+Gd+K+l++++++kvRllmRrd++lkvcaNh+i++e++lkp+ gsdrs+v+t+ ad+a++ a++++
  CCD25943.2  91 DVKTMEENEKTLFKIRAKLFRFDSENKEWKERGTGDCKFLQNEQTKKVRLLMRRDKTLKVCANHIIAPEYELKPNVGSDRSWVYTCtADVAEGPAEAFT 189
                 79***********************************************************************************99************ PP

                 EEEEESSHHHHHHHHHHHHHHHH CS
     Ran_BP1  99 laikfkkkeeadefkkkfeeakk 121
                 +ai+f++ke+ad+fk +fe+a++
  CCD25943.2 190 FAIRFGSKENADKFKAEFEKAQE 212
                 *********************96 PP

>> WH1  WH1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   1.1     4e-08   0.00024       7     110 ..      98     210 ..      93     211 .. 0.80

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 4e-08
                 .EEEEEEEEEEEEEEETTTTCEEEECECEEEEEEEEETTTTEEEEEEEETTT-SEEEEEEE-SS---B....-SSSSEEEEESSSS.......EEEEEE CS
         WH1   7 kcqtiasavaqvyladpakketWikakhagavslvkdstqnsyflrlvklqdakvvieqeiyknleyn....qarqkfhtfedera.......vvGLnF 94 
                 + +t+++ +a+++  d ++ke W++ + +g  ++ +++  +  +l ++  +  kv  ++ i ++ e +    ++r    t   + a        +++ F
  CCD25943.2  98 NEKTLFKIRAKLFRFDSENKE-WKE-RGTGDCKFLQNEQTKKVRLLMRRDKTLKVCANHIIAPEYELKpnvgSDRSWVYTCTADVAegpaeafTFAIRF 194
                 4589***********999999.***.*******************999978999999999999887651122455555555444334566777899*** PP

                 SSHHHHHHHHHHHHHH CS
         WH1  95 aseeeakkFakkvqea 110
                 +s+e+a+kF +++++a
  CCD25943.2 195 GSKENADKFKAEFEKA 210
                 **********999876 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   4.1   1.1e-06    0.0066      62     124 ..       9      73 ..       1     103 [. 0.57

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 1.1e-06
       SR-25  62 rssssssssssssssssssssssssddrkkrgkkkdkkkk..kkkkkkkkkkekkkakekakaea 124
                 +++ ++++s s +++ +ss++ s   ++k +  +k+  ++   kkkkkk kk+k+++k + + +a
  CCD25943.2   9 STTPATTTSGSDAQKPPSSAIFSMFGGKKDTDAEKEEGEEglMKKKKKKIKKLKRRQKTNDEDDA 73 
                 33445566667777777777777777777777777766551145555666777777775433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1311  (0.0731218); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1749.48
//
Query:       CCD25944.2  [L=822]
Description: hypothetical protein NDAI_0G01680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.2e-190  634.7   0.1   1.5e-190  634.4   0.1    1.1  1  Trehalase        Trehalase
    5.3e-17   61.2   0.7    8.8e-17   60.5   0.7    1.4  1  Trehalase_Ca-bi  Neutral trehalase Ca2+ binding domain


Domain annotation for each model (and alignments):
>> Trehalase  Trehalase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  634.4   0.1  1.7e-194  1.5e-190       1     511 [.     234     791 ..     234     792 .. 0.97

  Alignments for each domain:
  == domain 1  score: 634.4 bits;  conditional E-value: 1.7e-194
                 CCTTSTCCCCCGCCTS-..HHHHHHHHHCHHCCHHEE..TTTTHHHHHHHHCE-S.GGGS.EE.E-TT-HHHHHHHHHHH.CTGGHH.EECCHHCCTTC CS
   Trehalase   1 klfgdkktfvDearlse..vdrllrlikaslekaltrridkedlkkfvedtfeet.gseleri.vpkdekeqpeyflkka.edeelrleaeelnklwka 94 
                 k+fg++++f+Dearl+e  v+rl+rli+++++++ltrr+d  ++ +++ dt++++ g +++ri vp+++++q+e++ +++ ++++l+le+e+l+k++++
  CCD25944.2 234 KSFGRHQVFLDEARLNEnpVNRLSRLISNQFWNTLTRRVDLYSVGEIAMDTKIDApGAKNPRIyVPYNCPDQYEFYIQASqMNPSLKLEVEYLPKDITP 332
                 689********************************************9999876615566999***************9999***************99 PP

                 .CCCHTTTS-SCE-TTECEEE-TT.........-EE-SBTTB-S-BCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHSS--SBSBGGGTT---S-- CS
   Trehalase  95 .lvrkikkkvgllpeassllplpk.........pfvVPGgRFrElYyWDsYfvilGLleskkvdlakgmvenfiyliekYGkilNgnRsYYlsRSQPPl 183
                  +v++++ ++gll+ a++++ +p+         p+ VPGgRF+ElY+WDsY+++lGL+es+kvd+akgmve+fi++ie+YGkilN+nRsYYl+RSQPP+
  CCD25944.2 333 eYVKSLNGTPGLLALAMEEHFNPStgeksligfPYAVPGGRFNELYGWDSYMMALGLIESNKVDVAKGMVEHFIFEIEHYGKILNANRSYYLCRSQPPF 431
                 9************************************************************************************************** PP

                 HHHHHHHHHHHC.......HCCHHHHHHHHHHHHHHHCCTTTCCETTCCC-CTC-EEE--SSSTTS-TCCCHHHHHHHHHCTT...HCCHHHHHCCCCH CS
   Trehalase 184 ltdmvlrvyekt.......eddallravlaalkkeyefwmaeqrldevtklskryllnrygvpeetprpesyledketaeklk...kerkkeevyrelk 272
                 ltdm+l+v++k+       ++d l+ra+ aa+k+++++w++e+rld++tkls +y++n++g+p+et+++++++++ ++  k++   +e+++ ++ ++++
  CCD25944.2 432 LTDMALEVFKKIggdnnpnAVDLLKRAFKAAIKEYKSVWCSEPRLDPITKLS-CYHPNGLGIPPETEPDHFDTILLPFTRKYNvslEEFREMYNDGKIH 529
                 ****************************************************.********************************************** PP

                 HHHHCCHHCHHHHCCCCTT-S.TCCCCTGGGEE-HHHHHHHHHHHHHHH.....HCCCHCC-.....CCHHHHHHHHHHHHHHHHHHHCEETTTTEE-- CS
   Trehalase 273 aaaesgwdlssRwlresghdtgellelrtaklvpvDLNallyklekdia.....efedklgd.....setseefeekaekrkkaidkvLWneeagvylD 361
                 ++++++++l++R +resghdt++++e ++a+l+++DLNallyk+e dia     +f++k++d     +++se++++ a+ r+k+i+k++W+ee+g+++D
  CCD25944.2 530 EPQLDEFFLHDRGVRESGHDTTYRFEGVCAYLATIDLNALLYKYECDIAdviekYFDNKFHDtndgtTTNSEHWRHLASIRQKKINKYMWDEESGFFFD 628
                 *************************************************98888666666668888899****************************** PP

                 EETTTTEE----BGGGGHHHHCT-S-HHHHHHHHHHCHHHHCCCCCEES..CCCC-SBSSS.-SSTTSTTEEEHHHHHHHHHHHHHTT-HHHHHHHHHH CS
   Trehalase 362 YdlkkkkqtnyesatnlvpLwaglaskeqaaklvakvlekleesgllva..egglgtsllk.sgrQWDyPngWaPlqilaveglerygeeelaerlaer 457
                 Y++k k++t+yesat++++Lwagla+ eqa+ +v+k+l+kle+ g+lva  e ++g ++++ + rQWDyP+gWaP+qila+egl +y ++ +a rl++r
  CCD25944.2 629 YNVKAKQRTSYESATTFWALWAGLATTEQAEIMVKKALPKLEMLGGLVActESSRGPISINrPVRQWDYPFGWAPHQILAWEGLSNYDYKDIATRLSYR 727
                 *************************************************99************************************************ PP

                 HHHHHHHHHHHC.TSEBSCEETTS.......TSTTB..TT-SSSSTTCSBHHHHHHHHHHHCCH CS
   Trehalase 458 wlktvtkafsde.gklvEKYdvtr.......eaeyg..GgggeyvlqeGFGWvNgvvlelLell 511
                 wl+++tkaf+d+ g++vEKYdvtr       eaeyg  G+++++v++eGFGWvN+++l + +++
  CCD25944.2 728 WLYMMTKAFVDYnGIVVEKYDVTRgvdphrvEAEYGnqGADFKGVATEGFGWVNASYLLGSKYM 791
                 *******************************99**9*********************9886665 PP

>> Trehalase_Ca-bi  Neutral trehalase Ca2+ binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.7   9.9e-21   8.8e-17       1      30 []     177     206 ..     177     206 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 9.9e-21
  Trehalase_Ca-bi   1 LeqLLeqEDTDgnfQITIeDkGPKvlsLGT 30 
                      Le+LL++EDTD+n+QITIeDkGPKv+++GT
       CCD25944.2 177 LEELLAREDTDKNYQITIEDKGPKVIKIGT 206
                      89***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.44
# Mc/sec: 5602.78
//
Query:       CCD25945.2  [L=213]
Description: hypothetical protein NDAI_0G01690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-52  178.6   8.4    1.4e-52  178.3   8.4    1.1  1  DUF1640       Protein of unknown function (DUF1640)
     0.0029   16.5   4.6     0.0038   16.2   4.6    1.2  1  Spc7          Spc7 kinetochore protein
  ------ inclusion threshold ------
      0.011   15.7   5.0      0.013   15.4   5.0    1.1  1  FTA4          Kinetochore complex Fta4 of Sim4 subunit, or CE
      0.027   14.4   3.8      0.052   13.5   3.8    1.5  1  DUF1732       Domain of unknown function (DUF1732)
      0.062   13.5   3.5       0.35   11.1   0.1    2.6  2  XhlA          Haemolysin XhlA
      0.075   11.6  10.4      0.093   11.3  10.4    1.0  1  FapA          Flagellar Assembly Protein A
       0.14   12.1   7.4       0.38   10.7   0.3    2.4  2  Phage_Mu_Gam  Bacteriophage Mu Gam like protein
       0.23   11.5   5.6       0.39   10.8   1.1    2.3  2  DUF2730       Protein of unknown function (DUF2730)
       0.25   12.1   1.4        9.4    7.0   0.0    2.6  3  Sulfatase_C   C-terminal region of aryl-sulfatase
       0.32   11.3  11.4       0.93    9.8   8.4    2.4  2  DUF5082       Domain of unknown function (DUF5082)
       0.41   11.1   5.4         11    6.5   0.3    2.7  2  FlaC_arch     Flagella accessory protein C (FlaC)
       0.48   10.8   7.6        0.7   10.3   4.9    2.2  2  Uso1_p115_C   Uso1 / p115 like vesicle tethering protein, C t
        2.2    8.6   8.3       0.21   11.9   3.4    1.9  2  DUF2524       Protein of unknown function (DUF2524)
        2.8    8.1   9.1       0.47   10.6   1.4    2.1  2  Phage_lysis   Bacteriophage Rz lysis protein
        4.5    7.6  12.8         16    5.9   9.4    2.3  2  YlqD          YlqD protein


Domain annotation for each model (and alignments):
>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.3   8.4   1.1e-55   1.4e-52       3     175 .]      39     212 ..      37     212 .. 0.96

  Alignments for each domain:
  == domain 1  score: 178.3 bits;  conditional E-value: 1.1e-55
     DUF1640   3 ThalvrrLeekG.ftkeqAeaimsaltevlneslekvakslvskselekseylqkaalselrkevqisersefaalrseteklqreleklkqkLreeid 100
                 T+++ + L e+G ft+eq+ ai+++++++++  + +v+k+l++++ l + +y+q++++++l++++ + +r+ef+++++e+e+++++lekl++kL+eei+
  CCD25945.2  39 TNNYKNILMEQGkFTHEQSSAIVNLMSDAIKGGVVHVSKDLAKRERLTQLTYQQRVDFAKLKDQLLSADRNEFHNIQNEYERIKNDLEKLRNKLKEEIT 137
                 5555566666666************************************************************************************** PP

     DUF1640 101 klkadirldlnleKgrireelakleakiqelnnkidrevsalrteiEsvKldvikyliglvvgilavglavvRll 175
                 k +a+++ldl+leKgriree+++++ +i+e++ +id+evs+++++i+svK++v+++lig+++g++a++la++Rll
  CCD25945.2 138 KANAGFKLDLSLEKGRIREESSHHNLQIKEIDSRIDQEVSNMKMQIDSVKTQVMQWLIGVCTGTFALVLAYIRLL 212
                 *************************************************************************96 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   4.6   3.1e-06    0.0038     184     293 ..      86     201 ..      40     209 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 3.1e-06
        Spc7 184 eklq.eaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekie.....elkeqkseleeeiaeaervleeckgwsesevsrlkeevk 276
                 ++l  +++ ++++++ + L + r+e+ ++++e+e+ k++l++l+++l+e  +k +     +l+ +k +++ee ++++  ++e  +  ++evs++k + +
  CCD25945.2  86 TQLTyQQRVDFAKLKDQLLSADRNEFHNIQNEYERIKNDLEKLRNKLKEEITKANagfklDLSLEKGRIREESSHHNLQIKEIDSRIDQEVSNMKMQID 184
                 33321466789999999999999999999999999999999999999998888772333346788999999999999999999999999********99 PP

        Spc7 277 aleeltgwkivslsgst 293
                 +++ + +  ++++  +t
  CCD25945.2 185 SVKTQVMQWLIGVCTGT 201
                 99988765555555554 PP

>> FTA4  Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   5.0   1.1e-05     0.013      92     199 ..      69     187 ..      12     189 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
        FTA4  92 e.....vnedltkeelIkeLPeswe.......veekeaeeepleallerYaelrarLielserrqqlqarlarlrklkallepflgsedpqesvqenlv 178
                 +     v++dl+k+e  ++L  ++        ++  +a++++  + +++Y++++++L +l++++++   + +   kl   le+    + ++es + nl 
  CCD25945.2  69 KggvvhVSKDLAKRERLTQLTYQQRvdfaklkDQLLSADRNEFHNIQNEYERIKNDLEKLRNKLKEEITKANAGFKLDLSLEKG---RIREESSHHNLQ 164
                 13334499*************999967766652223333444477789***********************************9...556666666666 PP

        FTA4 179 tr..dgeleaElermRvLlarva 199
                 ++  d+ + +E++ m++ ++ v+
  CCD25945.2 165 IKeiDSRIDQEVSNMKMQIDSVK 187
                 6622566**********999986 PP

>> DUF1732  Domain of unknown function (DUF1732)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   3.8   4.4e-05     0.052      11      82 ..     113     191 ..     100     193 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.4e-05
     DUF1732  11 disEElvRlkshlkelrelleeee...svGrkLdFllQE.lnReanT...igskandleitklvvelKseiekirEqvq 82 
                 +i+ E +R+k+ l++lr+ l+ee    ++G kLd  l     Re  +   +  k  d +i + v ++K++i+ ++ qv 
  CCD25945.2 113 NIQNEYERIKNDLEKLRNKLKEEItkaNAGFKLDLSLEKgRIREESShhnLQIKEIDSRIDQEVSNMKMQIDSVKTQVM 191
                 799*****************97633449******966542567765422288899*********************995 PP

>> XhlA  Haemolysin XhlA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.7      0.16   1.9e+02       2      30 ..     114     139 ..     113     144 .. 0.67
   2 ?   11.1   0.1   0.00029      0.35      23      65 ..     165     208 ..     153     209 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.16
        XhlA   2 ikerlerietkldnleervdkleekaaea 30 
                 i+ + eri+++l++l ++   l+e  ++a
  CCD25945.2 114 IQNEYERIKNDLEKLRNK---LKEEITKA 139
                 556667888888888884...66665555 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00029
        XhlA  23 leekaaeaeekiknleedlkkle.snqkWlirtiiGalisaviy 65 
                 ++e  ++ ++++ n+  ++++ + + + Wli++ +G++  ++ y
  CCD25945.2 165 IKEIDSRIDQEVSNMKMQIDSVKtQVMQWLIGVCTGTFALVLAY 208
                 67888999**************825689********98777665 PP

>> FapA  Flagellar Assembly Protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3  10.4   7.7e-05     0.093     274     418 ..      46     182 ..      32     192 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.7e-05
        FapA 274 ievekqilnslikaggkiivngrkgkivggnikalkevkakklGselgtkteievgldepelkekl.keleeeleeleeeleklkkkikklpklkaekq 371
                 ++ + + ++++ +a  +++       i gg +++ k    +    e  t+++ ++ +d+ +lk++l ++ ++e +++++e e++k++++kl++ k +++
  CCD25945.2  46 LMEQGKFTHEQSSAIVNLMS----DAIKGGVVHVSKDLAKR----ERLTQLTYQQRVDFAKLKDQLlSADRNEFHNIQNEYERIKNDLEKLRN-KLKEE 135
                 55566788999999999997....89999999999999988....8999999999**********99999999*******************9.88999 PP

        FapA 372 lesekkeqlkklletkeklkeeleeleeelkelkeeleskkeeakik 418
                 +++        l  +k +++ee ++++ ++ke+++++++  ++ k +
  CCD25945.2 136 ITKANAGFKLDLSLEKGRIREESSHHNLQIKEIDSRIDQEVSNMKMQ 182
                 99999999999999999999999999999999999999983333444 PP

>> Phage_Mu_Gam  Bacteriophage Mu Gam like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.9     0.025        30      12      44 ..     112     144 ..     105     156 .. 0.75
   2 ?   10.7   0.3   0.00032      0.38      20      57 ..     156     193 ..     146     195 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.025
                   HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH CS
  Phage_Mu_Gam  12 aelkreleeieaeaneeiaaikekleaeleplk 44 
                    +++ e e+i++++++ ++++ke+ +++++  k
    CCD25945.2 112 HNIQNEYERIKNDLEKLRNKLKEEITKANAGFK 144
                   567888888888888888888888887776655 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00032
                   HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH CS
  Phage_Mu_Gam  20 eieaeaneeiaaikekleaeleplkkeieylesllkqY 57 
                   e  +  n +i++i+ + ++e++++k +i+  + +++q+
    CCD25945.2 156 EESSHHNLQIKEIDSRIDQEVSNMKMQIDSVKTQVMQW 193
                   55677899*****************************9 PP

>> DUF2730  Protein of unknown function (DUF2730)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.1   0.00033      0.39      17      88 ..      67     134 ..      52     150 .. 0.83
   2 ?    2.7   0.2      0.11   1.3e+02      39      62 ..     166     189 ..     151     194 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00033
     DUF2730  17 vvavilllldskYakredleklaekveendkrlteletkvenLPt.akdlekLkllladlrgelkaleaevrq 88 
                 ++   ++ +++  akre l++l     ++++r++ ++ k + L   ++++++++ + + ++ +l++l++++++
  CCD25945.2  67 AIKGGVVHVSKDLAKRERLTQL-----TYQQRVDFAKLKDQLLSAdRNEFHNIQNEYERIKNDLEKLRNKLKE 134
                 455556788999**********.....99*****999998888652789*******************99975 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.11
     DUF2730  39 aekveendkrlteletkvenLPta 62 
                 +e+ +++d+ +++++++++++ t+
  CCD25945.2 166 KEIDSRIDQEVSNMKMQIDSVKTQ 189
                 344445555566666666665544 PP

>> Sulfatase_C  C-terminal region of aryl-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       3.7   4.4e+03      81      86 ..      59      64 ..      32      98 .. 0.51
   2 ?    3.2   0.2      0.12   1.4e+02      59      99 ..     104     141 ..     103     151 .. 0.81
   3 ?    7.0   0.0    0.0079       9.4      65     119 ..     150     202 ..     145     206 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 3.7
                 HHHHHH CS
  Sulfatase_C 81 keikka 86
                 + ++  
   CCD25945.2 59 AIVNLM 64
                 222223 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.12
                  TTT-TT--S-TTSTTCCHHHHHHHHHHHHHHHCCC------ CS
  Sulfatase_C  59 lerDpsEkyplsaespeykevlkeikkaveehkktlkpvpn 99 
                  l++D +E ++++   +ey+ + ++++k+++++k++++++++
   CCD25945.2 104 LSADRNEFHNIQ---NEYERIKNDLEKLRNKLKEEITKANA 141
                  678888888888...68999999999999999998887765 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0079
                  --S-TTSTTCCHHHHHHHHHHHHHHHCCC------TCCHHCHS.-GGGS--S.TTS CS
  Sulfatase_C  65 Ekyplsaespeykevlkeikkaveehkktlkpvpnqlakgellpkpwlqpcc.eqf 119
                  Ek  +++es++++  +kei + +++  +++k    q+++++ ++++wl   c ++f
   CCD25945.2 150 EKGRIREESSHHNLQIKEIDSRIDQEVSNMK---MQIDSVKTQVMQWLIGVCtGTF 202
                  5666777778888887888877777777765...5888888889999999997766 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       6.3   7.6e+03      64     106 ..      38      48 ..      30      65 .. 0.56
   2 ?    9.8   8.4   0.00078      0.93      36     111 ..     104     190 ..      98     194 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.3
     DUF5082  64 eennydgirsnlessyqtyvdkldelidaieeEIerLenqise 106
                 ++nny++i+                                 e
  CCD25945.2  38 NTNNYKNILM--------------------------------E 48 
                 4455544443................................3 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00078
     DUF5082  36 lsdekeslkqkkkklekplnssesWkGkeennydgirs...........nlessyqtyvdkldelidaieeEIerLenqiseaqgvl 111
                 ls+  +++++ +++ e + n+ e +++k +++   + +            + ++ ++   +++e+ ++i++E++++++qi + ++ +
  CCD25945.2 104 LSADRNEFHNIQNEYERIKNDLEKLRNKLKEEITKANAgfkldlslekgRIREESSHHNLQIKEIDSRIDQEVSNMKMQIDSVKTQV 190
                 6777899******************9995555555555589999999999******************************9988765 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.5     0.011        13      14      38 ..     109     133 ..      98     137 .. 0.78
   2 ?    6.5   0.3    0.0092        11       5      23 ..     172     190 ..     167     193 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.011
   FlaC_arch  14 teletvkkeneelsksveelkenVk 38 
                  e+ ++++e e +++++e+l  + k
  CCD25945.2 109 NEFHNIQNEYERIKNDLEKLRNKLK 133
                 4778899999999999999987766 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0092
   FlaC_arch   5 lEnklsklsteletvkken 23 
                 +++++s++++++++vk++ 
  CCD25945.2 172 IDQEVSNMKMQIDSVKTQV 190
                 7899999999999999986 PP

>> Uso1_p115_C  Uso1 / p115 like vesicle tethering protein, C terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   4.9   0.00058       0.7      37      77 ..      99     141 ..      75     169 .. 0.77
   2 ?    1.0   0.2      0.42     5e+02      39      67 ..     161     189 ..     143     192 .. 0.48

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00058
  Uso1_p115_C  37 k..eakkaaesqakeleaenkklekeleklraelkeekekeke 77 
                     + + a +++ +++++e ++ +++leklr +lkee  k+++
   CCD25945.2  99 LkdQLLSADRNEFHNIQNEYERIKNDLEKLRNKLKEEITKANA 141
                  24456667777999**************************986 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.42
  Uso1_p115_C  39 akkaaesqakeleaenkklekeleklrae 67 
                   + ++++ ++++++e++ ++ +++ ++ +
   CCD25945.2 161 HNLQIKEIDSRIDQEVSNMKMQIDSVKTQ 189
                  33344444444444444444444444444 PP

>> DUF2524  Protein of unknown function (DUF2524)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       7.8   9.3e+03      29      43 ..      32      46 ..      22      58 .. 0.62
   2 ?   11.9   3.4   0.00018      0.21       2      65 ..      80     144 ..      79     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.8
     DUF2524 29 krqehyndeeYteAq 43
                + +   n+++Y++ +
  CCD25945.2 32 ETVHVSNTNNYKNIL 46
                444455555565544 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00018
     DUF2524   2 atrqsveellqkceqaieeaeeqfeeakrqe.hyndeeYteAqlkLEeavneLeklaksandqQr 65 
                 a+r+ + +l  +      + ++q+ +a r e h+ ++eY   ++ LE++ n+L++ +++an+  +
  CCD25945.2  80 AKRERLTQLTYQQRVDFAKLKDQLLSADRNEfHNIQNEYERIKNDLEKLRNKLKEEITKANAGFK 144
                 788888888887777778889*********9455589******************9999998655 PP

>> Phage_lysis  Bacteriophage Rz lysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   3.1      0.51   6.1e+02      23      66 ..      85     133 ..      72     141 .. 0.64
   2 ?   10.6   1.4   0.00039      0.47      19      58 ..     150     190 ..     128     192 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.51
  Phage_lysis  23 ieelqtrqr.avaeldakh....tkeLadaksendrlradvaaGrrrLr 66 
                  +++l+ +qr + a+l  +      +e ++ + e +r+++d+   r +L+
   CCD25945.2  85 LTQLTYQQRvDFAKLKDQLlsadRNEFHNIQNEYERIKNDLEKLRNKLK 133
                  4455555555666666654222257899999999999999877666665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00039
  Phage_lysis  19 akaei.eelqtrqravaeldakhtkeLadaksendrlradv 58 
                  +k  i ee ++++ ++ e+d +  +e  + k ++d++++ v
   CCD25945.2 150 EKGRIrEESSHHNLQIKEIDSRIDQEVSNMKMQIDSVKTQV 190
                  33333044455556***********************9987 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   3.2     0.022        26      35      85 ..      84     138 ..      67     145 .. 0.71
   2 ?    5.9   9.4     0.013        16      30      85 ..     112     192 ..      97     194 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.022
        YlqD  35 elqqLefqakrlikeikkqsaq....qieeiqeqvekekserlekkkqllqqleq 85 
                  l qL+ q++   +++k q  +    + ++iq+++e+ k+++++ +++l++++++
  CCD25945.2  84 RLTQLTYQQRVDFAKLKDQLLSadrnEFHNIQNEYERIKNDLEKLRNKLKEEITK 138
                 4677777777777777776666666677777777777777777777777777655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.013
        YlqD  30 eqldkelqqLefqakrlikeikkqsaq.........................qieeiqeqvekekserlekkkqllqqleq 85 
                 +++++e ++++ ++++l +++k++ ++                         qi+ei +++++e s+++ ++++++ q+ q
  CCD25945.2 112 HNIQNEYERIKNDLEKLRNKLKEEITKanagfkldlslekgrireesshhnlQIKEIDSRIDQEVSNMKMQIDSVKTQVMQ 192
                 555555555554444444444443333333344455555555555555555588888888888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1771  (0.0987785); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 1503.67
//
Query:       CCD25946.2  [L=252]
Description: hypothetical protein NDAI_0G01700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     1e-111  372.0   0.4   1.2e-111  371.8   0.4    1.0  1  PMM          Eukaryotic phosphomannomutase
    0.00054   19.8   0.0      0.019   14.7   0.0    2.1  1  Hydrolase_3  haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.054   13.0   0.0       0.27   10.7   0.0    1.8  1  S6PP         Sucrose-6F-phosphate phosphohydrolase
      0.061   13.6   0.1      0.067   13.5   0.1    1.5  1  Hydrolase    haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PMM  Eukaryotic phosphomannomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  371.8   0.4  2.6e-115  1.2e-111       1     220 [.      33     251 ..      33     252 .] 0.99

  Alignments for each domain:
  == domain 1  score: 371.8 bits;  conditional E-value: 2.6e-115
                 HHHHHHHHCTTSEEEEE-SS-HHHHHHHHS.TTHHHH-SEEEEGGGTEEEETTEEEEE--HHHHH-HHHHHHHHHHHHHHHHCS--S---S-SEEEESS CS
         PMM   1 lkeflqklrkkveigvvgGsdlekikeqlagdevldefdyvfsenGlvaykkgkelasqsiiealgeeklkklinfvlryladldlPvkrGtfiefrng 99 
                 ++++l klrkkv ig+vgGsdl+k+ eql g +vl+efdy+fsenGl+ay+ g++lasqs+i+++gee+++kl  f+lryl++ldlP++rGtf+efrng
  CCD25946.2  33 VRDTLVKLRKKVVIGFVGGSDLSKQLEQL-GPNVLSEFDYAFSENGLTAYRLGEQLASQSFINWIGEEEYNKLAVFILRYLSELDLPKRRGTFLEFRNG 130
                 6899*************************.7******************************************************************** PP

                 EEEE-SS-TTSSHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTSSEEEEEETTTEEEEEETT-SGGGGGGGCTTST-SEEEEEESS-STTSTTHHHHHST CS
         PMM 100 llnvsPiGrnasqeernefeeydkkekireklvealkeefadlgltfsiGGqisfdvfPkgWdktyclqhvekdsfdeihffGdktaeGGndyeiyadp 198
                 ++nvsPiGrnas+eernefe+ydk+++ir+k+v+al+e+f +lgltfsiGGqisfdvfP+gWdktyclqhvekd+f+eihffGdkt+eGGndyeiy+d+
  CCD25946.2 131 MINVSPIGRNASTEERNEFERYDKEHQIRAKFVNALREKFGHLGLTFSIGGQISFDVFPTGWDKTYCLQHVEKDGFKEIHFFGDKTTEGGNDYEIYVDD 229
                 *************************************************************************************************** PP

                 TCEEEE-SSHHHHHHHHHHHHT CS
         PMM 199 rtighsvtspddtvkkleellk 220
                 rt+ghsv++p +tv+ l+el+ 
  CCD25946.2 230 RTVGHSVKNPSETVAVLKELFD 251
                 *******************995 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.2e-06     0.019       1     195 [.      14     201 ..      14     225 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 4.2e-06
                  EEEEIIIIIS-TTS---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHH.HCCCC..SEEEEGGGTEEECTTTEEE.EE--B-...HHHHHHHHHHH CS
  Hydrolase_3   1 ialDlDGTLlnsdkkisektkeaikklkekgikvviATGRslravlpvle.elgld..lpvialNGaliddekgkil.ykstis...kedvkeiikll 91 
                  + +D+DGTL     ++s++ ++++ kl+ k + + +  G  l++ l+ l  ++  +   ++ + NG    +  g+ l ++s i+   +          
   CCD25946.2  14 VLFDVDGTLTPARLTVSDEVRDTLVKLR-KKVVIGFVGGSDLSKQLEQLGpNVL-SefDYAFSENGLTA-YRLGEQLaSQSFINwigE---------- 98 
                  579*************************.6777777777655544333331333.24778888888888.444444403333333332.......... PP

                  HHTT.CEEEEEESSEEEESTT..THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEE.EES-HHHHHHHHHHHHHHCTTTE.EEEEESTTEEEEEETT CS
  Hydrolase_3  92 kenn.veillytedkvyvlnk.eksekkkkeeektkkkkeeidseeeledeeiakil.ilkdkekldelekelksklnkll.titssskgyleimpkg 185
                    ++  +++++  +++  l+  +++ +  + ++   + +++ ++ +++e+   + +  ++k+++   ++ ++l++k+++l  t++  ++ ++++ p g
   CCD25946.2  99 --EEyNKLAVFILRYLSELDLpKRRGTFLEFRNGMINVSPIGRNASTEER---NEFErYDKEHQIRAKFVNALREKFGHLGlTFSIGGQISFDVFPTG 191
                  ..222222222222222222211222222222333333333333333333...223323455555555555555555554445555555556666666 PP

                  -SHHHHHHHH CS
  Hydrolase_3 186 vsKgtalkkl 195
                  ++K   l+++
   CCD25946.2 192 WDKTYCLQHV 201
                  6666555555 PP

>> S6PP  Sucrose-6F-phosphate phosphohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     6e-05      0.27       3     208 ..      12     238 ..      10     249 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 6e-05
                 EEEEE-TBTTTB.S-HHHHHHHHHHHH.GGGGGEEEEEE-SS-HHHHHHHHHHHT----SEEEETTTTEEEE..TTEE-HHHHHHHHTT--HHHHHHHH CS
        S6PP   3 lllvsdLDntlvdgdnealarlnelleaeerkdvllvfaTGRsldsakellkeknllkPdvlitsvGteiyygeelvpdkaweeildekwdrqavveal 101
                  l++ d+D+tl++      ++ ++ l  + rk+v+++f+ G  l++++e l    l + d++ ++ G + y   e+   +++ + + e+  ++  v +l
  CCD25946.2  12 TLVLFDVDGTLTPARLTVSDEVRDTLV-KLRKKVVIGFVGGSDLSKQLEQLGPNVLSEFDYAFSENGLTAYRLGEQLASQSFINWIGEEEYNKLAVFIL 109
                 68889*******555566678888888.8999****************************************888899999999999987788888899 PP

                 HT-TTEEE--GG......G-BTTBEEEEE-TTS-THHHHHHHHHHHTTTS-EEEE.............EETTT..EEEEEETT-SHHHHHHHHHHHHT- CS
        S6PP 102 aklpeLtlQpee......eqrehKvSyfvdkekaaevlkeleqlLekreldvkvi.............yssgk..dlDvlPkraskgeAlryLakklel 179
                 + l eL l + +      +++   vS   +++  +e  +e e++ +++++++k++             +s g    +Dv P + +k + l++  k  ++
  CCD25946.2 110 RYLSELDLPKRRgtflefRNGMINVSPIGRNASTEE-RNEFERYDKEHQIRAKFVnalrekfghlgltFSIGGqiSFDVFPTGWDKTYCLQHVEKD-GF 206
                 999999886654222221345556777777777777.88888888888888888888888888888887765411578888888888888886543.22 PP

                 -GGGEEEEE-S....GGGHHHH.TSSSEEEE-TT CS
        S6PP 180 eleqilvcGds....gnDeell.ignvlgVvVgn 208
                   ++i + Gd     gnD e++    + g  V+n
  CCD25946.2 207 --KEIHFFGDKttegGNDYEIYvDDRTVGHSVKN 238
                 ..33333343222226666666555555666666 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   1.5e-05     0.067       3      60 ..      13      69 ..      12     248 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 1.5e-05
                EEEEESBTTTBCHH....HHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH.HHH CS
                xxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
   Hydrolase  3 tvvfDkdGTLttge....psvedvivsaalalaaaletgsehpigkalvaaakarsgal.tgf 60
                +v+fD+dGTLt  +     +v+d++v++    ++   +g     g  l ++ +++++++ ++f
  CCD25946.2 13 LVLFDVDGTLTPARltvsDEVRDTLVKL----RKKVVIG--FVGGSDLSKQLEQLGPNVlSEF 69
                79*********77732225555555555....3322222..1123334444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       483  (0.0269396); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1895.26
//
Query:       CCD25947.2  [L=213]
Description: hypothetical protein NDAI_0G01710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-06   28.0   0.1    3.5e-06   27.2   0.1    1.6  1  USP8_dimer  USP8 dimerisation domain


Domain annotation for each model (and alignments):
>> USP8_dimer  USP8 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   1.9e-10   3.5e-06      15      88 ..       7      80 ..       1     118 [. 0.77

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.9e-10
  USP8_dimer 15 LkkladklkkdkknksikrllrsaeklfkkAeeyrlegdeEkAYvlymkylnll.elIrkksdykekkasvkell 88
                L++ a    k +  ++++++l++  ++++kA+ + + +d   AY +y +y+ l  +++ k++++   ++  +e++
  CCD25947.2  7 LAAEARDY-KFNPAIPLRIYLKTCVNILNKAQTAFQSRDLSLAYTFYFRYVDLCtNKLSKHPEFIISSNGNSESM 80
                55555554.6667788999*********************************************77666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.22s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1714.63
//
Query:       CCD25948.2  [L=764]
Description: hypothetical protein NDAI_0G01720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-31  107.3   4.4    2.3e-30  106.0   4.4    1.7  1  VASt      VAD1 Analog of StAR-related lipid transfer domain
    4.7e-23   81.3   0.6    2.1e-22   79.1   0.6    2.1  1  GRAM      GRAM domain


Domain annotation for each model (and alignments):
>> VASt  VAD1 Analog of StAR-related lipid transfer domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   4.4   2.6e-34   2.3e-30       4     151 ..     503     652 ..     500     654 .. 0.87

  Alignments for each domain:
  == domain 1  score: 106.0 bits;  conditional E-value: 2.6e-34
                 EEEESS-HHHHHHHHH.SS-THHHHHHHHH.TT-BS-H..HHSE..................EEEEEEEE--SSSS-SEEEEEEEEE..EEEEETT.EE CS
        VASt   4 eevlpisvkalfellf.gdkseflkkfleerqkttdis.vgpweeake.........kgkltRklsytkplkgsigpkqtkvtetqtilveeddly.yi 90 
                 e +l+++++ +fe++f + ++++  k+l+++  ++ is +++    ++         + +l+R+++y k+l+ + gpk+t+++ t+t  + ++d++ yi
  CCD25948.2 503 ELELSAPPGIIFEMMFsELNHSYVFKYLKSQ-DSSKISkFTKF---NPstdtiedgeSTHLSRTYNYEKALHFPAGPKSTTCYTTET--IIHKDFKdYI 595
                 66899***********766888888888886.88888324444...3334688888899999*************************..78999999** PP

                 EEEEEEE-T.TSTTTTSEEEEEEEEEEEETTTE..E.EEEEEEEEEESS--TTHHHHHHHH CS
        VASt  91 vvvtttktpldvPygdsFsvetryvitwgsknskstcrltvstkvefsksswlkgiIekga 151
                 +v+++tktp +vP+g++F+++tr++++w+s+++   c +++s+++e+s+ssw+k+++e+++
  CCD25948.2 596 MVINSTKTP-NVPSGNNFQTQTRFMFRWASETR---CIMKISFWIEWSGSSWIKSMVESNC 652
                 *********.******************88666...79*********************98 PP

>> GRAM  GRAM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.6   2.3e-26   2.1e-22       2     111 ..     296     402 ..     295     404 .. 0.97

  Alignments for each domain:
  == domain 1  score: 79.1 bits;  conditional E-value: 2.3e-26
                 HHHHHS----TT--EEEEEEEEEESS.SEEEEEEEEESSEEEEEE-STT---EEEEEGGGEEEEEE....-TT-TT-EEEEESS-..EEEEE--TTHHH CS
        GRAM   2 lfrkkfkellpeEkllatykCyllrdggpvqGrlyltnyrlcFrskplgsskkvvlpladikriekstsaanllengiqvetsskdlelaFagfvtrde 100
                 +f++ f +++++++ll++++C+l+++  ++qG+ly+++++lcF+sk+l + +k ++p+ +i+ ++k ts+a l+ n+i++e  ++  +++F+gf +rd 
  CCD25948.2 296 EFHSLFPQVPEDDNLLDEFNCSLSKE-FLYQGKLYISESFLCFNSKMLTWVAKEMIPFDKIVFFQK-TSTAGLFNNAISIELDNDT-KVQFNGFNSRDY 391
                 68899999******************.***************************************.***************9998.************ PP

                 HHHHHHHHHHH CS
        GRAM 101 aiefieellkk 111
                 +++fi++ ++k
  CCD25948.2 392 TYDFIKDIWSK 402
                 ********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1367  (0.0762452); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 5158.86
//
Query:       CCD25949.2  [L=633]
Description: hypothetical protein NDAI_0G01730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-44  150.1   9.7    5.1e-40  136.4   0.6    3.1  3  Cu-oxidase_2  Multicopper oxidase
    5.9e-37  126.3   4.7    1.3e-33  115.5   1.7    3.2  3  Cu-oxidase_3  Multicopper oxidase
    3.9e-32  111.6   4.6    3.9e-27   95.3   0.1    3.4  3  Cu-oxidase    Multicopper oxidase
      0.004   17.2   0.0        7.6    6.7   0.0    3.3  3  Cupredoxin_1  Cupredoxin-like domain


Domain annotation for each model (and alignments):
>> Cu-oxidase_2  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   1.9   1.3e-06    0.0059      28     135 ..      57     157 ..      22     159 .. 0.75
   2 ?    0.4   0.0      0.11   4.9e+02      37     108 ..     217     278 ..     189     286 .. 0.75
   3 !  136.4   0.6   1.1e-43   5.1e-40       2     135 ..     381     528 ..     380     530 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.3e-06
                   TTTSSEEEEEETTEEEEEEEEE-SSS...-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSE.EEE-TTEEEEEEEES..S-EEEEEEESS CS
  Cu-oxidase_2  28 fsentnvitlpkgevveiviqnntkl...pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdt.vqvppggwvairfka.dnpGvwllHCHi 119
                   ++   ++i+++kg+++e++++n  +      ++H+HG+ fq    + ++         nl + ++  t   + pg++  + f++ d+ G + +H H 
    CCD25949.2  57 WP--PPDIHVNKGDRIELYLTNGFQDnhtVTSLHFHGM-FQNSTFDDNQ---------NLMDGPSMVTqCPIVPGQTYLYNFTTgDQIGTYWYHAHH 141
                   33..6899**************77773335679****9.6666566666.........67665554432567789999999**989*********** PP

                   HHHHHTT-EEEEEEEC CS
  Cu-oxidase_2 120 lwHldqGmalqfvvrp 135
                       + Gm +++++ +
    CCD25949.2 142 SAQYGDGMRAALIIHD 157
                   *999999999988776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.11
                   EETTEEEEEEEEE-SSS.-EEEEESS-EEEEEEEEECCCCCCTCCSSGCCGSSCBSEEEE-TTEEEEEEEES. CS
  Cu-oxidase_2  37 lpkgevveiviqnntkl.pHPfHlHGhdfqvlgrgpgndpeedpksynlenpvrrdtvqvppggwvairfkad 108
                   ++ +++  + + n++ +  + + l+ h+f +++ ++             ++p   d+  + + +++ + +k +
    CCD25949.2 217 FETNKTYLLRFINMGLFvSQYISLEDHQFTIVEVDGMY-----------VKPNITDVLYLAAAQRMSVLVKSK 278
                   44466666777777777667777889999999777777...........899999999999988888887764 PP

  == domain 3  score: 136.4 bits;  conditional E-value: 1.1e-43
                   XS-SCCCCCCCEEEEEEEEEEEETCCTTTSSEEEEEETTEEEEEEEEE-SSS-EEEEESS-EEEEEEEEECC.........CCCCTCCSSGC..... CS
  Cu-oxidase_2   2 vppklptllqltsgneeaseitngeefsentnvitlpkgevveiviqnntklpHPfHlHGhdfqvlgrgpgn.........dpeedpksynl..... 84 
                   v+pk p l+++ ++++ a+   ++++++en n++ ++k++++e+v++n ++++HPfHlHGh+fq++++++g           ++e++  yn      
    CCD25949.2 381 VDPKIPILTTILTSGKLAD---DPRIYGENVNPFFFKKNQIIEVVLNNYDTGRHPFHLHGHNFQIVQKSNGFhideqfpeeLQDEMTVPYNEsnplm 474
                   7899********9998888...9*************************************************9999988765555555555588999 PP

                   ...CGSSCBSEEEE-TTEEEEEEEES.S-EEEEEEESSHHHHHTT-EEEEEEEC CS
  Cu-oxidase_2  85 ...enpvrrdtvqvppggwvairfkadnpGvwllHCHilwHldqGmalqfvvrp 135
                      e p+ rdtv ++p+g+v++rfkadnpGvw++HCH++wHl+qG+a++f+++p
    CCD25949.2 475 pipEIPMIRDTVVLEPNGHVVLRFKADNPGVWYFHCHVDWHLQQGLAAVFIEDP 528
                   999************************************************986 PP

>> Cu-oxidase_3  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.5   1.7   2.9e-37   1.3e-33       3     117 ..      36     158 ..      34     160 .. 0.91
   2 ?   -2.1   0.0      0.85   3.8e+03      33      59 ..     415     441 ..     411     467 .. 0.58
   3 !    9.9   0.0   0.00015      0.69      75     113 ..     488     525 ..     482     529 .. 0.90

  Alignments for each domain:
  == domain 1  score: 115.5 bits;  conditional E-value: 2.9e-37
                   EEEEEECTTEESEEEEEECTSSBS-EEEEETT-EEEEEEEE-S.SS-...B-EEEET--S-GG..........GSCSGGG-B-TT-EEEEEEE--S- CS
  Cu-oxidase_3   3 tektvsplggterevitvNgqfpgptievregdtvvvnvtNkl.den...tsihwhGlqqrkt.....swmDGvpgvtqcpiqpgesftyrftvkqq 90 
                   ++ t++p+g +e+++i++Ng++p p i+v++gd++++ +tN + d n   ts+h+hG+ q++t     + mDG+++vtqcpi pg+++ y+ft  +q
    CCD25949.2  36 SWITAKPDGIHEKKMIGFNGKWPPPDIHVNKGDRIELYLTNGFqD-NhtvTSLHFHGMFQNSTfddnqNLMDGPSMVTQCPIVPGQTYLYNFTTGDQ 131
                   68899**************************************62.335699********8653333379*************************** PP

                   SEEEEEEE--TTHHHTT-EEEEEEE-H CS
  Cu-oxidase_3  91 agtlwYhshlslqqaaGlaGaiiiedk 117
                   +gt+wYh+h s+q+ +G+  a+ii+d+
    CCD25949.2 132 IGTYWYHAHHSAQYGDGMRAALIIHDD 158
                   ************************996 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.85
                   TT-EEEEEEEE-SSS-B-EEEET--S- CS
  Cu-oxidase_3  33 egdtvvvnvtNkldentsihwhGlqqr 59 
                   +++ ++v + N  +     h+hG + +
    CCD25949.2 415 KNQIIEVVLNNYDTGRHPFHLHGHNFQ 441
                   555555555555444455555554433 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00015
                   B-TT-EEEEEEE--S-SEEEEEEE--TTHHHTT-EEEEE CS
  Cu-oxidase_3  75 iqpgesftyrftvkqqagtlwYhshlslqqaaGlaGaii 113
                   ++p+ +++ rf++++  g  ++h h++++ ++Gla ++i
    CCD25949.2 488 LEPNGHVVLRFKADN-PGVWYFHCHVDWHLQQGLAAVFI 525
                   789999*********.************999***98876 PP

>> Cu-oxidase  Multicopper oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   6.5e-06     0.029      56     155 ..      56     156 ..      22     159 .. 0.78
   2 !   95.3   0.1   8.7e-31   3.9e-27       2     135 ..     169     290 ..     168     309 .. 0.91
   3 ?    1.8   0.1     0.053   2.4e+02      82      97 ..     430     445 ..     419     460 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.5e-06
                 TTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEE..TCETTS..EEEESCEEE-TTEEEEEEEEE.-SSSEEEEEEEEGSSSCHHHHTTSE CS
  Cu-oxidase  56 gaslatltvepgktyrlriinvsaddslnfsIeGHkltVvev..Dgvyve..pvevdsldIavGqrysvlvta.nqapgnYwivasgrsnlieafengt 149
                 +  ++ ++v +g+++ l++ n+  d++   s++ H +    +  D ++    p  v++  I +Gq+y   +t+ +q  g+Yw++a   ++  + ++   
  CCD25949.2  56 KWPPPDIHVNKGDRIELYLTNGFQDNHTVTSLHFHGMFQNSTfdDNQNLMdgPSMVTQCPIVPGQTYLYNFTTgDQ-IGTYWYHA---HHSAQYGDGMR 150
                 4567899999999999999999999999999999955444448777777789*********************666.********...77666666666 PP

                 EEEEEE CS
  Cu-oxidase 150 aaailr 155
                 aa i++
  CCD25949.2 151 AALIIH 156
                 666666 PP

  == domain 2  score: 95.3 bits;  conditional E-value: 8.7e-31
                 EEEEEEEEETCBCTTSCBC.HSSCHCHHHHHTT--SEEEETTBSS.......CTTTTSGGGEEEEETTEEEEEEEESSS-BEEEEETSB-EEEEEETCE CS
  Cu-oxidase   2 eyvitlsDwyhkdakelekellasgkapadtppvpdavlingkggfnatladkdgaslatltvepgktyrlriinvsaddslnfsIeGHkltVvevDgv 100
                 e+vi++sD y k+ +++++ ++ s+ +p++++p+pd +l+n+          +    + tl++e +kty+lr+in+++  s  +s+e+H++t+vevDg 
  CCD25949.2 169 EFVIGISDLYWKPYDQVTD-KFLSRYNPTGAEPIPDLFLFNN----------T---VNETLHFETNKTYLLRFINMGLFVSQYISLEDHQFTIVEVDGM 253
                 689*******999999888.8999999***************..........2...3689*************************************** PP

                 TTSEEEESCEEE-TTEEEEEEEEE-SS..SEEEEEEE CS
  Cu-oxidase 101 yvepvevdsldIavGqrysvlvtanqa..pgnYwiva 135
                 yv+p+ +d l +a++qr+svlv+ +++   +n++++ 
  CCD25949.2 254 YVKPNITDVLYLAAAQRMSVLVKSKETdpGKNFALMQ 290
                 ************************8843589999887 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.053
                 BEEEEETSB-EEEEEE CS
  Cu-oxidase  82 slnfsIeGHkltVvev 97 
                  ++f ++GH++++v+ 
  CCD25949.2 430 RHPFHLHGHNFQIVQK 445
                 589***********85 PP

>> Cupredoxin_1  Cupredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0017       7.6      29      64 ..      54      98 ..      16     132 .. 0.74
   2 ?   -1.5   0.0      0.61   2.8e+03      40      61 ..     414     435 ..     410     467 .. 0.66
   3 !    6.3   0.0    0.0023        10      64      96 ..     482     514 ..     476     522 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0017
  Cupredoxin_1 29 dggfePskievkagekvklkiknkdktpeefesed.........l 64
                  +g+  P  i+v++g +++l ++n  +  ++++s           +
    CCD25949.2 54 NGKWPPPDIHVNKGDRIELYLTNGFQDNHTVTSLHfhgmfqnstF 98
                  58999******************9999999998875545444444 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.61
  Cupredoxin_1  40 kagekvklkiknkdktpeefes 61 
                   k+++ +++ ++n d+  + f  
    CCD25949.2 414 KKNQIIEVVLNNYDTGRHPFHL 435
                   5566666666666666444433 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0023
  Cupredoxin_1  64 lgeekvlapgktttitiaplkpGeYeftcdmhm 96 
                   ++   vl+p+   ++ +++++pG + f+c  + 
    CCD25949.2 482 IRDTVVLEPNGHVVLRFKADNPGVWYFHCHVDW 514
                   5566899**********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       484  (0.0269954); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 4810.63
//
Query:       CCD25950.2  [L=213]
Description: hypothetical protein NDAI_0G01740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-57  193.6   3.1    2.2e-57  193.3   3.1    1.1  1  SPC22     Signal peptidase subunit


Domain annotation for each model (and alignments):
>> SPC22  Signal peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.3   3.1   1.2e-61   2.2e-57       2     170 ..       5     179 ..       4     180 .. 0.95

  Alignments for each domain:
  == domain 1  score: 193.3 bits;  conditional E-value: 1.2e-61
       SPC22   2 lqRlnavlalaltvlavlvalialsslflk.ls....kakskisnvkvsva.ksvrdygs.nrkkkdraklkfdldaDlsslfnWNtKqlFvyltaeYe 93 
                 +qR++ v ++a+tv +++va+i+ ss+f+  ++    +aks+isn+k+s++ +++r+ygs n k k++ k++fdl++Dls+lfnWNtKq+Fvylta+Y+
  CCD25950.2   5 SQRFQVVTNQAVTVGIFIVAFIVGSSWFHLyQNdvfnSAKSTISNIKPSINiRTSRYYGStNGKAKENLKVSFDLSTDLSPLFNWNTKQVFVYLTASYN 103
                 69*************************8875535788***********999*********99************************************* PP

       SPC22  94 tkknevNqvvlWDkIirskedaklklknvkskYslkdqeksLrgrkvtltLhwnvmPvvGlltygetagkssfklpe 170
                 ++++ vN+v++WDkIi++k+da+l+l+n kskY+++d e++++g++++++Lhwn++P+vG l yg+t+g  ++ +pe
  CCD25950.2 104 GSST-VNEVTFWDKIIEDKNDAVLELNNEKSKYAVWDLENGFSGKELQFNLHWNIQPWVGGLLYGQTNGIYHVIIPE 179
                 *999.**************************************************************9887777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1582.50
//
Query:       CCD25951.2  [L=526]
Description: hypothetical protein NDAI_0G01750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-58  198.0  30.6      3e-58  197.8  30.6    1.0  1  Sugar_tr  Sugar (and other) transporter
      8e-24   84.2  32.9    5.6e-21   74.8  24.4    2.1  2  MFS_1     Major Facilitator Superfamily
  ------ inclusion threshold ------
       0.25   10.9   0.0       0.25   10.9   0.0    2.6  4  SLATT_6   SMODS and SLOG-associating 2TM effector domain 6
        5.2    7.4   8.9        1.2    9.5   0.9    3.3  3  DUF1772   Domain of unknown function (DUF1772)


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8  30.6   6.7e-62     3e-58       1     452 []      12     473 ..      12     473 .. 0.93

  Alignments for each domain:
  == domain 1  score: 197.8 bits;  conditional E-value: 6.7e-62
                 HHHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTT CS
    Sugar_tr   1 valvaalggllfgYdtgvigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgk 99 
                 v ++++++g++ g  +  +++flt+    +n+++ ++ s+ +     +g+++++  +G+++G+++  l++ + GR   +  +++l +ig+++ ++    
  CCD25951.2  12 VSFIMSIAGFILGMEITSLAVFLTSEY--FNQYF-NNPSPFQ-----QGILMASSTFGGLFGCIIYTLIVAKCGRVTLFHLGSILWFIGSIVGIFVY-- 100
                 57899999*****99999999999988..34444.4444444.....59************************************************.. PP

                 SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHHHHGGGS---HHHH CS
    Sugar_tr 100 nsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallllilllflPESPryl 198
                  ++++++++R++ Gi +G++s+l+P yisE+ p+k+ g++++++qla+t+  l+   + +gln+ +n++ +r   g++++p ll++ l ++lPE+P +l
  CCD25951.2 101 -NIWMIAASRFIKGITIGIFSILIPAYISELYPAKKKGRVMGYTQLACTLSTLIIHYLCVGLNELGNDVSFRAAWGFEILPVLLFFGLTFWLPETPQWL 198
                 .9************************************************************************************************* PP

                 HHTT-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH............HTTHHHHSH...HHHHHHHHHHHHHHTTHHHHHHHTTTHHHHSS-THH. CS
    Sugar_tr 199 vekgkeeeakevlaklrgeedadrelaeekdsleaeqeee.......kaswkellssktvrqrlligvvlqifqqltGinaimyysptifenlglsks. 289
                   +g++ +a+ +  ++ ++     + ++ +d l++ + +          ++  l+++  + +++l g  lq++ q++Gin++++y ++i e +gl+ + 
  CCD25951.2 199 TLHGDYTKAQIIQNNVATSYNSRHNEVNHIDLLHKIDLAGiygdgsnDLKYMDLFKK-PYWKQTLFGTILQLLVQFSGINILLFYITYICEMIGLKGEe 296
                 ***************999988888888888999999877789987554444444444.38999**********************************99 PP

                 .HHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH...HHHHTTSS...............CHHHHHHHH.HHHHHHHTTTTHHHHH CS
    Sugar_tr 290 .llvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilg.ivalllvaks............kaasivaivfia.lfialfalgwgpvpwv 373
                  ++   i +++n+  +++ i+ +d++ R+   l+Ga+  ++ ++ +g i+a ++ + +            +++ ++ i +++ lf+++fal++ ++p +
  CCD25951.2 297 kFVCASIPYFINTGLSLFPIMYMDHVKRKISTLFGAFPLSLIMIAIGvIMAVFGHSVKpidgnksivwfiEGKPGLWILGLClLFVVIFALTLSCMPTI 395
                 ***********************************************9999999988899***9****999999999999873699************* PP

                 HHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT--CCCCGGGT CS
    Sugar_tr 374 lvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrtleeieelf 452
                   sE+f ++ R+k++a++  + wl n + +ll p ++e ++ +++f++ +g+  ++ i++ +   et +++ ++i+ lf
  CCD25951.2 396 FTSEIFELKSRPKGMAFCISAGWLLNCILTLLAPLMMEYLK-WGTFILLGGVTFVVSIIISIYGKETYNLSEKQISSLF 473
                 *****************************************.*************************999988887765 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8  24.4   1.3e-24   5.6e-21       2     321 ..      17     386 ..      16     394 .. 0.80
   2 !   11.3   8.2   2.6e-05      0.12      81     172 ..     365     458 ..     358     491 .. 0.71

  Alignments for each domain:
  == domain 1  score: 74.8 bits;  conditional E-value: 1.3e-24
       MFS_1   2 llaaflsalarsilgpalpl.alaedlg.ispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlg 98 
                 ++a+f+ ++ ++ l+++l++ + ++ ++  sp ++g+l++  ++g +++ +++  ++ ++Gr  ++ lg +l+++g+++++f+ ++w+++++r++ G++
  CCD25951.2  17 SIAGFILGMEITSLAVFLTSeYFNQYFNnPSPFQQGILMASSTFGGLFGCIIYTLIVAKCGRVTLFHLGSILWFIGSIVGIFVYNIWMIAASRFIKGIT 115
                 6899***************99999999999**********************************************7777789**************** PP

       MFS_1  99 agalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslg...Wravfyilaivsllafvlfllllpeepperkrkspkeee...... 188
                  g++  ++ a+i++++p +++gr++g+ +++  l++++   l   l ++++   +ra++ +  +  ll+f    l ++ ++++ +   + +        
  CCD25951.2 116 IGIFSILIPAYISELYPAKKKGRVMGYTQLACTLSTLIIHYLCVGLNELGNdvsFRAAWGFEILPVLLFFG---LTFWLPETPQWLTLHGDYTkaqiiq 211
                 ************************************999777777776666888**999999888888755...8999999999999998885555565 PP

       MFS_1 189 .............kgtgpaplvp.....................awkallkdpvlw.....illialllfffgfsglltllplylqevlglsglllagl 248
                              +        +                      +  l+k+p  w       ++ ll+ f g+++ll++++ +  e  gl+g  +  +
  CCD25951.2 212 nnvatsynsrhneV--------NhidllhkidlagiygdgsndlKYMDLFKKP-YWkqtlfGTILQLLVQFSGINILLFYITYI-CEMIGLKG-EEKFV 299
                 55555555555440........0555555555555666666666567777777.455666678888999999999999999996.*******7.77777 PP

       MFS_1 249 llallalvgailallagrlsdrlgrrrrlllallllllaalglallavt...........ssavllll.....vlvliGfglgfvfpsl 321
                   +++++++ +l+l+   ++d+++r++ +l++ + l+l+ +++ ++ +            +  +++++     +l ++G++l fv++ +
  CCD25951.2 300 CASIPYFINTGLSLFPIMYMDHVKRKISTLFGAFPLSLIMIAIGVIMAVfghsvkpidgnK--SIVWFiegkpGLWILGLCLLFVVIFA 386
                 8***********99999999**999999999988877777777666666678899999663..33333336665555555444443322 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 2.6e-05
       MFS_1  81 fa...sslwlllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                 f+   ++lw+l ++ ++  ++a +l  +  ++++++f  + r++++++  ++  l   +  ll++l++++l W ++f++l++v++++ +++ ++ 
  CCD25951.2 365 FIegkPGLWILGLCLLFVVIFALTLSCMPTIFTSEIFELKSRPKGMAFCISAGWLLNCILTLLAPLMMEYLKW-GTFILLGGVTFVVSIIISIYG 458
                 4334566776666666666666666666677777888888888888887777777777777888888888888.778888888888777644444 PP

>> SLATT_6  SMODS and SLOG-associating 2TM effector domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.3      0.62   2.8e+03      40      78 ..      90     127 ..      83     151 .. 0.59
   2 ?   -4.7   0.6       3.4   1.5e+04      61      70 ..     336     345 ..     334     350 .. 0.52
   3 ?   -1.9   0.1      0.48   2.2e+03      37      62 ..     374     399 ..     367     402 .. 0.79
   4 ?   10.9   0.0   5.5e-05      0.25      68     141 ..     448     519 ..     414     522 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.62
     SLATT_6  40 lislavGilalvieelstkllsalliiigiialyisaye 78 
                 +i  +vGi+   i  ++ +      i igi +++i ay 
  CCD25951.2  90 FIGSIVGIFVYNIWMIAASRFI-KGITIGIFSILIPAYI 127
                 5555666655555544432221.2244566666665554 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 3.4
     SLATT_6  61 salliiigii 70 
                 s+++i ig+i
  CCD25951.2 336 SLIMIAIGVI 345
                 4455555544 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.48
     SLATT_6  37 lislislavGilalvieelstkllsa 62 
                 +++l+ l+v i+al++  ++t + s 
  CCD25951.2 374 ILGLCLLFVVIFALTLSCMPTIFTSE 399
                 47899999999999998888766665 PP

  == domain 4  score: 10.9 bits;  conditional E-value: 5.5e-05
     SLATT_6  68 giialyisayekdkekYekagkeltklfneLkelysevksseeedlskleaelkeieaefkevaiskqillsdw 141
                  +++++is+y   ke+Y+ + k++ +lf++ k+  ++  s++++++s+ e++ ++i  ++ke  +s++i+l ++
  CCD25951.2 448 FVVSIIISIYG--KETYNLSEKQISSLFDKNKRGSFTGSSDDNKSTSTNENTTMSISIKSKENPASQPIILQKY 519
                 35677777775..789*****************************************************99877 PP

>> DUF1772  Domain of unknown function (DUF1772)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.17   7.7e+02      44      84 ..      27      73 ..      11      84 .. 0.76
   2 ?   -0.3   0.1      0.27   1.2e+03      37      80 ..     109     154 ..      83     167 .. 0.63
   3 ?    9.5   0.9   0.00026       1.2      37      88 ..     331     394 ..     301     457 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.17
     DUF1772 44 llsalafayla......araasrgarllylaaaal.lllsivpyTllv 84
                ++s+++f+ ++      ++  s+ + ++++a++    l++ ++yTl+v
  CCD25951.2 27 ITSLAVFL-TSeyfnqyFNNPSPFQQGILMASSTFgGLFGCIIYTLIV 73
                44444444.446788888888999999998888888889999999987 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.27
     DUF1772  37 avfpp..lallsalafayla..araasrgarllylaaaallllsivpy 80 
                 +++    +++ s+l  ay++    a+++g+   y  + ++++ls++++
  CCD25951.2 109 RFIKGitIGIFSILIPAYISelYPAKKKGRVMGY--TQLACTLSTLII 154
                 4444445778888888888855444444444444..344444444443 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00026
     DUF1772  37 avfpplallsalafayla.............araasrgarllylaaaallllsivpyTllvmvPt 88 
                  +fp+ ++ +a+++++++               +  +g+++l++++ +ll+++i+ +Tl +m Pt
  CCD25951.2 331 GAFPLSLIMIAIGVIMAVfghsvkpidgnksIVWFIEGKPGLWILGLCLLFVVIFALTLSCM-PT 394
                 45777666666666644468889*****99989999*******8866669999999**9999.44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1140  (0.0635841); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.28s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 3718.91
//
Query:       CCD25952.2  [L=426]
Description: hypothetical protein NDAI_0G01760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-53  180.1   3.2    2.6e-51  174.5   3.2    2.9  1  Pkinase         Protein kinase domain
    3.7e-30  105.1   0.1    5.3e-29  101.3   0.1    2.5  1  Pkinase_Tyr     Protein tyrosine kinase
  ------ inclusion threshold ------
      0.031   13.0   0.0      0.071   11.9   0.0    1.6  1  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.5   3.2   4.3e-55   2.6e-51       1     261 [.      11     330 ..      11     333 .. 0.90

  Alignments for each domain:
  == domain 1  score: 174.5 bits;  conditional E-value: 4.3e-55
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEE..EEESSEEEEEEE--TTEBHHHHHH....HHS CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyev..feekdelylvleyveggeladlle....rkg 93 
                 y++le++G+GsfG+V k+++  t+k ++ K+ik  ++++k+++++++E+kil +lk +niv +y++    +++ lyl +ey++ g+la +++    r++
  CCD25952.2  11 YQVLEEIGRGSFGSVRKVIHIPTKKLMVRKEIKYGHMNSKERQQLISECKILSQLKFENIVDFYNWdfNDSEKVLYLYMEYCSRGDLALMIKsyksRNK 109
                 7899***********************************************************965316669999***********9999999988999 PP

                 S--HHHHHHHHHHHHHHHHHHHHTT.....................EE-SS-SGGGEEEET...................................... CS
     Pkinase  94 slseeeakkiakqilegleylHskg.....................iiHrDlKpeNiLide...................................... 133
                  ++e+ +  i++q+l +l+ +H                        +iHrDlKp Ni++++                                      
  CCD25952.2 110 YIPEKIIWGILAQLLMALHKCHYGVelsplitiydrmkpptkgkniVIHRDLKPGNIFLSNennnddnnddndqqknkddndlhlennipnasgrgnnm 208
                 9*********************66567899******************************669**************************9999988877 PP

                 .....TTEEEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH.. CS
     Pkinase 134 .....kgelKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkek 226
                      + ++K++DFGlak le+s + +t++vgt++Y++PEvl +++ys+ +D+WslG+++ye+ + +ppf++++       +l++     ki   t + 
  CCD25952.2 209 kvdysQVVVKLGDFGLAKSLETSIQfATTYVGTPYYMSPEVLMDQPYSPLSDIWSLGCVVYEMCSLHPPFQAKTF-----LDLQN-----KIK--TGKV 295
                 77665555**************99999********************************************3333.....33333.....221..2345 PP

                 .HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 227 lpeaseiseeakdllkkllkkdpkkRltaeellqh 261
                  + ++  s+ +  ++++++++d k+R++  ellq+
  CCD25952.2 296 DKIPEYYSNGLNAIIHSMIDVDLKTRPSTFELLQD 330
                 6778889**********************999985 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.1   8.9e-33   5.3e-29       3     257 ..      13     329 ..      11     331 .. 0.88

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 8.9e-33
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST.TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHHHHHHHT.. CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke.eateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLlkfLrkk.. 95 
                  + +++G+G+fG+V +      ++k  v+   K +k  +++++e+++l++e+ki+++lk +niv ++ +    +e+ l++ +ey++ GdL  ++++   
   CCD25952.2  13 VLEEIGRGSFGSVRKVIHI-PTKKLMVR---KEIKYgHMNSKERQQLISECKILSQLKFENIVDFYNWDFndSEKVLYLYMEYCSRGDLALMIKSYks 106
                  6799***********9999.33333333...5555415566679***********************9996455559****************99999 PP

                  ...................CTTTSBHHHHHHHHHHHHHHHHHHHHTT..EEEST-SGGGEEEEE.................................. CS
  Pkinase_Tyr  96 ...................ekekltlkdllsfalqvAkGmeyLeskk..lvHrdlaarNvLlse.................................. 138
                                     + +k+++   ls  + + + m+   + k  ++Hrdl   N++ls+                                  
   CCD25952.2 107 rnkyipekiiwgilaqllmALHKCHYGVELSPLITIYDRMKPPTKGKniVIHRDLKPGNIFLSNennnddnnddndqqknkddndlhlennipnasgr 204
                  *************99999978888888888888888888886554333589************99********************************* PP

                  .........TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BB CS
  Pkinase_Tyr 139 .........nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegkrlekp 227
                           + vvk++DfGLa+++  + + + +++      +m+pE+l+++ ++  sD+Ws G +++E+++  + p++  +  ++ +k+k+gk  + p
   CCD25952.2 205 gnnmkvdysQVVVKLGDFGLAKSL--ETSIQFATTYVGTPYYMSPEVLMDQPYSPLSDIWSLGCVVYEMCS-LHPPFQAKTFLDLQNKIKTGKVDKIP 299
                  ********999*************..555666677777788******************************.699*********************** PP

                  TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 228 ekcpeelyelmkkcweedpeeRptfselve 257
                  e+ ++ l+ ++++  + d + Rp+  el++
   CCD25952.2 300 EYYSNGLNAIIHSMIDVDLKTRPSTFELLQ 329
                  ***********************9777765 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.2e-05     0.071     328     400 ..     156     264 ..     151     272 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.2e-05
  Pkinase_fungal 328 iLHrDiSenNilit..............................dskke...........gerkglLiDLDlakelsddssesgarertGTleFm 381
                     ++HrD   +Ni +                               +               ++    L D+ lak+l++  s + a + +GT+++m
      CCD25952.2 156 VIHRDLKPGNIFLSnennnddnnddndqqknkddndlhlennipN---AsgrgnnmkvdySQVVVKLGDFGLAKSLET--SIQFATTYVGTPYYM 245
                     68***********98888877777765555555444444444440...044444455445666667888888888884..5566678******** PP

  Pkinase_fungal 382 aievlkgeeHsyrhDLESf 400
                     + evl+++  s++ D+ S+
      CCD25952.2 246 SPEVLMDQPYSPLSDIWSL 264
                     ******9999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1309  (0.0730102); expected 358.6 (0.02)
Passed bias filter:                      671  (0.0374254); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 3193.40
//
Query:       CCD25953.2  [L=746]
Description: hypothetical protein NDAI_0G01770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-09   37.3   0.0    3.8e-09   36.0   0.0    1.7  1  SH3_1     SH3 domain
     0.0053   16.6   0.0      0.013   15.4   0.0    1.7  1  SH3_9     Variant SH3 domain


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   4.2e-13   3.8e-09       2      48 .]     271     317 ..     270     317 .. 0.97

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 4.2e-13
                 ESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   2 AlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 AlY +++ +s+++++++++ +i+l+++++ Ww  ++ ++gk G+ P+
  CCD25953.2 271 ALYAFKGPDSSHCQLEQDEACILLNDQDSYWWLIKRCNDGKIGFAPA 317
                 9***********************************999******96 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.4e-06     0.013       1      48 [.     271     320 ..     271     321 .. 0.92

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-06
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsl..tGrtGlvPanyv 48 
                 Aly+++ ++    +L++++  +++++ +++W++ ++  +G+ G+ Pa ++
  CCD25953.2 271 ALYAFKGPDSSHCQLEQDEACILLNDQDSYWWLIKRcnDGKIGFAPAEIL 320
                 89**********************999********556********9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1319  (0.073568); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.24s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 5158.10
//
Query:       CCD25954.2  [L=938]
Description: hypothetical protein NDAI_0G01780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-17   61.3   1.9     0.0019   18.3   0.0    7.9  8  HEAT           HEAT repeat
    1.3e-15   57.5   0.2    1.4e-11   44.6   0.0    5.5  7  HEAT_EZ        HEAT-like repeat
    2.2e-08   34.4   0.0     0.0012   19.1   0.0    4.7  4  HEAT_2         HEAT repeats
      2e-05   24.4   1.4    0.00098   19.0   0.0    3.8  4  IBN_N          Importin-beta N-terminal domain
     0.0014   18.3   0.0        0.4   10.2   0.0    3.5  3  CLASP_N        CLASP N terminal
     0.0022   18.6   0.5         12    6.6   0.0    5.1  6  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
  ------ inclusion threshold ------
      0.034   14.2  12.1       0.11   12.6   0.1    5.0  6  Cnd1           non-SMC mitotic condensation complex subunit 1
       0.15   12.2   0.2       0.71   10.0   0.1    2.2  2  Spore_III_AB   Stage III sporulation protein AB (spore_III_AB
       0.24   11.1   1.6         16    5.1   0.1    3.1  3  ERK-JNK_inhib  ERK and JNK pathways, inhibitor


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.7   3.3e+03      13      28 ..     216     231 ..     202     233 .. 0.76
   2 ?    2.7   0.0     0.095   1.9e+02       1      28 [.     245     273 ..     245     275 .. 0.84
   3 ?   -1.0   0.0       1.5   2.9e+03      13      29 ..     405     421 ..     400     423 .. 0.84
   4 !   18.3   0.0   9.6e-07    0.0019       2      30 ..     432     460 ..     431     461 .. 0.95
   5 !   15.8   0.0     6e-06     0.012       1      30 [.     472     501 ..     472     502 .. 0.95
   6 ?    5.0   0.0     0.018        35       1      31 []     513     543 ..     513     543 .. 0.94
   7 !    9.4   0.0   0.00068       1.3       1      28 [.     704     731 ..     704     734 .. 0.89
   8 ?   -1.5   0.0       2.2   4.5e+03      18      27 ..     776     785 ..     775     788 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.7
                 SHHHHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLgala 28 
                 +  VR+ ++k++  ++
  CCD25954.2 216 DDLVRAEVIKCINCII 231
                 5679*******98775 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.095
                 HHHHHHHHH.T-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkll.sDpspeVReaAakaLgala 28 
                 +l+++ +l  s ++ ++R   + aLg l+
  CCD25954.2 245 FLNVVFQLAqSNENNQIRIQLCIALGYLL 273
                 5889999995669999*********9886 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 1.5
                 SHHHHHHHHHHHHHHHH CS
        HEAT  13 speVReaAakaLgalae 29 
                  ++ R+ +a +L a+  
  CCD25954.2 405 QWNLRKCSASTLDAMTT 421
                 7999********99875 PP

  == domain 4  score: 18.3 bits;  conditional E-value: 9.6e-07
                 HHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgalaev 30 
                 +P+l + l+++ + +Rea+++aLga+ae+
  CCD25954.2 432 FPFLREHLTSEMWYIREATVLALGAMAEG 460
                 699************************96 PP

  == domain 5  score: 15.8 bits;  conditional E-value: 6e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 llP+l++ l+D+ + VR+ ++++L +++++
  CCD25954.2 472 LLPFLVEQLKDQWAPVRKITCWTLSRFSSW 501
                 89************************9986 PP

  == domain 6  score: 5.0 bits;  conditional E-value: 0.018
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaevl 31 
                 +l ++l+ l D+   V ++A+ ++++++e++
  CCD25954.2 513 ILEPILETLVDKKKVVQKSAISSVATFIENC 543
                 78899999********************997 PP

  == domain 7  score: 9.4 bits;  conditional E-value: 0.00068
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 +l +++ +l+D+  eVR++A    g+++
  CCD25954.2 704 ILQIVVVCLQDSVHEVRQSAYALWGDMV 731
                 789999**************99999887 PP

  == domain 8  score: -1.5 bits;  conditional E-value: 2.2
                 HHHHHHHHHH CS
        HEAT  18 eaAakaLgal 27 
                 ++A+++Lg +
  CCD25954.2 776 MNAIWCLGLM 785
                 58*****976 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         5   9.9e+03      29      48 ..     202     223 ..     199     228 .. 0.76
   2 ?   -1.7   0.0       2.3   4.6e+03      40      55 .]     257     272 ..     249     291 .. 0.78
   3 ?    3.7   0.0     0.048        95      21      35 ..     324     338 ..     318     356 .. 0.73
   4 !   44.6   0.0   7.1e-15   1.4e-11       1      54 [.     444     497 ..     444     498 .. 0.98
   5 ?   -0.3   0.0      0.83   1.7e+03      23      48 ..     511     532 ..     501     537 .. 0.62
   6 ?   -3.4   0.0       7.5   1.5e+04      34      48 ..     709     723 ..     701     723 .. 0.71
   7 ?    0.0   0.0      0.65   1.3e+03      28      54 ..     754     784 ..     744     785 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 5
     HEAT_EZ  29 ilpaLlalLnddsd..eVRaaA 48 
                 +++ ++++ +dd+   +VRa +
  CCD25954.2 202 LVDNFMNFIKDDNLddLVRAEV 223
                 6778899999999887778755 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 2.3
     HEAT_EZ  40 dsdeVRaaAagaLgnl 55 
                 ++  +R + ++aLg l
  CCD25954.2 257 ENNQIRIQLCIALGYL 272
                 3446788889998865 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.048
     HEAT_EZ  21 llqplvpeilpaLla 35 
                  lqp+v ei+p Ll 
  CCD25954.2 324 ILQPFVAEIVPVLLT 338
                 69***********93 PP

  == domain 4  score: 44.6 bits;  conditional E-value: 7.1e-15
     HEAT_EZ   1 wrvRraAawaLGrlaggepellqplvpeilpaLlalLnddsdeVRaaAagaLgn 54 
                 w +R+a ++aLG++a+g++ + ++++p++lp+L+  L+d  ++VR+ ++++L++
  CCD25954.2 444 WYIREATVLALGAMAEGGMKYFNDQLPVLLPFLVEQLKDQWAPVRKITCWTLSR 497
                 899*************************************************98 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.83
     HEAT_EZ  23 qplvpeilpaLlalLnddsdeV.RaaA 48 
                  p ++ il  L+     d+++V ++ A
  CCD25954.2 511 LPILEPILETLV-----DKKKVvQKSA 532
                 344555666666.....9999955555 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 7.5
     HEAT_EZ  34 lalLnddsdeVRaaA 48 
                 + +L+d+  eVR+ A
  CCD25954.2 709 VVCLQDSVHEVRQSA 723
                 456777777999876 PP

  == domain 7  score: 0.0 bits;  conditional E-value: 0.65
     HEAT_EZ  28 eilpaLl.alL.nddsdeV..RaaAagaLgn 54 
                 +il++ +   + ndd d V    +A+++Lg 
  CCD25954.2 754 QILKFIGtEIMhNDDTDGVsaVMNAIWCLGL 784
                 5666666666668888844449999999996 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0022       4.4      13      67 ..     216     284 ..     203     307 .. 0.67
   2 !   19.1   0.0   6.3e-07    0.0012      32      87 ..     431     495 ..     403     496 .. 0.77
   3 !    6.7   0.0    0.0049       9.8       1      56 [.     473     537 ..     473     549 .. 0.72
   4 ?   -2.4   0.0       3.3   6.6e+03      37      51 ..     709     723 ..     692     726 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0022
      HEAT_2  13 dpevrraairaLg.....rignp.......ealpaLvell.ededpavRraaaeaLg...aigdpealpaL 67 
                 d+ vr+++i+++      ++  +       + l+ +++l+ ++e+  +R + + aLg    ++ ++ +++L
  CCD25954.2 216 DDLVRAEVIKCINciiplQC--QsfivkidDFLNVVFQLAqSNENNQIRIQLCIALGyllDFRPDKLVNHL 284
                 55688888888887665522..1223333377888888886668888888888888833333445555555 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 6.3e-07
      HEAT_2  32 alpaLvellededpavRraaaeaLgai...g.......dpealpaLkellddddddvvReaAaeaL 87 
                 a+p L+e l++e +++R+a + aLga+   g       +p  lp+L e l+ d+++ vR  + ++L
  CCD25954.2 431 AFPFLREHLTSEMWYIREATVLALGAMaegGmkyfndqLPVLLPFLVEQLK-DQWAPVRKITCWTL 495
                 58999**********************554144554335889999999996.79999998776665 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0049
      HEAT_2   1 ldaLlqalendpdpevrraairaLgrignp..........ealpaLvellededpavRraaaeaLg 56 
                 l+ L+++l +d    vr+ ++++L r+ +            +l+ ++e l d++  v++ a+ + +
  CCD25954.2 473 LPFLVEQL-KDQWAPVRKITCWTLSRFSSWvlqdhtefllPILEPILETLVDKKKVVQKSAISSVA 537
                 57789999.899899999999999977665444444444444666666667888999999988765 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 3.3
      HEAT_2  37 vellededpavRraa 51 
                 v +l+d+  +vR+ a
  CCD25954.2 709 VVCLQDSVHEVRQSA 723
                 333444445555444 PP

>> IBN_N  Importin-beta N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   4.9e-07   0.00098       1      43 [.      35      89 ..      35      96 .. 0.89
   2 ?    1.3   0.1      0.17   3.3e+02      11      32 ..     242     262 ..     234     272 .. 0.82
   3 ?   -2.7   0.0       2.9   5.7e+03      45      62 ..     603     614 ..     601     615 .. 0.86
   4 ?   -3.7   0.0       6.2   1.2e+04      25      35 ..     713     723 ..     697     724 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 4.9e-07
                HHHHHHHHHCSTCHHHHHHHHHHCTTSHHHHH............HHHHHHHHHHH CS
       IBN_N  1 AekqLkqlekqpgflsallqilanseselevR............qlAalyLknli 43
                A ++Lk l+ qp+f+++l++il  +e+++ +R              A+l+Lkn+i
  CCD25954.2 35 AMESLKSLQLQPEFFNYLCYILIEGETDNTLRshfpmnelanyrATAGLLLKNTI 89
                7899************************999988888888888888888888887 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.17
                 STCHHHHHHHHHHCTTSHHHHH CS
       IBN_N  11 qpgflsallqilanseselevR 32 
                   +fl+ ++q++++ e+  ++R
  CCD25954.2 242 IDDFLNVVFQLAQSNENN-QIR 262
                 6799**********9999.888 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.9
                 HHGGSCCCHCGSXHHHHH CS
       IBN_N  45 khWsdeeekqslpseeke 62 
                 ++Ws      slp++++e
  CCD25954.2 603 NKWS------SLPDQDRE 614
                 69**......*****998 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 6.2
                 TTSHHHHHHHH CS
       IBN_N  25 seselevRqlA 35 
                 ++s++evRq+A
  CCD25954.2 713 QDSVHEVRQSA 723
                 56667999988 PP

>> CLASP_N  CLASP N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.062   1.2e+02      12     111 ..     250     348 ..     241     358 .. 0.71
   2 !   10.2   0.0    0.0002       0.4      19     131 ..     442     547 ..     426     556 .. 0.74
   3 ?    0.9   0.0      0.14   2.8e+02     177     199 ..     704     726 ..     695     754 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.062
     CLASP_N  12 fegketelnwdaReknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlk..eq.ldpmveillptLlkllgdtK 107
                 f+  ++++n ++R + ++ l  l+    p++ v++l  +++ +l++i +   +       ++c++l  +++  +  ++ l+p+v  ++p+Ll+ +  +K
  CCD25954.2 250 FQLAQSNENNQIRIQLCIALGYLLDFR-PDKLVNHLNGIIQFMLHLIGTVNDEKV---GIEACEFLHGFVCNSNipSHiLQPFVAEIVPVLLTKMVYNK 344
                 555667777777777777777777666.777777777777766666666655544...4577777777766543334559*************999999 PP

     CLASP_N 108 kiis 111
                 + i+
  CCD25954.2 345 DAIA 348
                 8775 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0002
     CLASP_N  19 lnwdaReknilklrslikgnvpedaveelleclkqlleailkalssLrttlsstgchllkelaiqlkeqldpmveillptLlkllgdtKkiisqnanqa 117
                 + w +Re+ +l l  + +g    +++++ l +l      ++++l++    + +  c +l++++    ++  +++  +l+ +l+ l d+Kk++ ++a  +
  CCD25954.2 442 EMWYIREATVLALGAMAEGG--MKYFNDQLPVLL---PFLVEQLKDQWAPVRKITCWTLSRFSSWVLQDHTEFLLPILEPILETLVDKKKVVQKSAISS 535
                 55666777777776666666..444444444444...67777777777777777888888888888888888888888999999*************** PP

     CLASP_N 118 laallsnasfspri 131
                 +a++++n+   +++
  CCD25954.2 536 VATFIENCD--SEL 547
                 ********9..554 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.14
     CLASP_N 177 iekslkkgleDanptVRetaRst 199
                 i ++++ +l+D+  +VR++a ++
  CCD25954.2 704 ILQIVVVCLQDSVHEVRQSAYAL 726
                 6788999***********98655 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.054   1.1e+02      24      80 ..     241     298 ..     220     317 .. 0.76
   2 ?    1.9   0.0      0.18   3.6e+02      21      64 ..     280     326 ..     263     362 .. 0.71
   3 !    6.6   0.0    0.0059        12       3      88 ..     447     532 ..     445     549 .. 0.91
   4 ?   -2.0   0.0       2.9   5.8e+03      36      78 ..     608     649 ..     586     654 .. 0.71
   5 ?    0.9   0.0      0.36   7.1e+02      28      46 ..     704     722 ..     683     733 .. 0.85
   6 ?   -1.4   0.0       1.9   3.8e+03      38      80 ..     877     920 ..     861     923 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.054
  Vac14_Fab1_bd  24 yleeivkpvlkcfs.DkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDs 80 
                     +++++++v++  +  +++++R   c +l  +     ++++++ln i + + +l+  +
     CCD25954.2 241 KIDDFLNVVFQLAQsNENNQIRIQLCIALGYLLDFRPDKLVNHLNGIIQFMLHLIGTV 298
                    4678888888876525678999999999999999999999999999999988887654 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.18
  Vac14_Fab1_bd  21 ikeyleeivkpvlkcfsD.kdsrvRyyacEslynia..kvakgevlk 64 
                    + ++l+ i++ +l+ +   +d++v   acE l+  +    + +++l+
     CCD25954.2 280 LVNHLNGIIQFMLHLIGTvNDEKVGIEACEFLHGFVcnSNIPSHILQ 326
                    56788999999999985438999*******99754411445566666 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0059
  Vac14_Fab1_bd   3 rkggligLaavaialekkikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksga 88 
                    r++++++L a+a +  k  ++ l  +++ +++ ++D+ + vR  +c +l   +  + ++  ++l  i++ + + + D+++ v+++a
     CCD25954.2 447 REATVLALGAMAEGGMKYFNDQLPVLLPFLVEQLKDQWAPVRKITCWTLSRFSSWVLQDHTEFLLPILEPILETLVDKKKVVQKSA 532
                    7788999999999999999999999************************9999999999999999999999999999999998876 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.9
  Vac14_Fab1_bd  36 fsDkdsrvRyyacEslyniakvakgevlkllneifdalvklva 78 
                    + D+d++  +   E+l  +a  + +++l +  ++++  +++++
     CCD25954.2 608 LPDQDRE-LWPLLECLSCVASSVGEKFLPMAPDVYERAFRILC 649
                    4455555.36667999999999999999999999998888765 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.36
  Vac14_Fab1_bd  28 ivkpvlkcfsDkdsrvRyy 46 
                    i+++v+ c++D+ ++vR  
     CCD25954.2 704 ILQIVVVCLQDSVHEVRQS 722
                    8999999999999999965 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 1.9
  Vac14_Fab1_bd  38 DkdsrvRyyacEslyniakvakgev.lkll.neifdalvklvaDs 80 
                     +d+r+R  +  +l ni+  + ++v ++ + ++i++ l+k + D 
     CCD25954.2 877 MTDERIRA-SHTTLKNIISGLSENVdVNIFaQDIYNFLMKYSNDL 920
                    45666663.334556665554444324443267888888888775 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.7      0.02        40      19     115 ..     199     302 ..     194     328 .. 0.74
   2 ?   -2.8   0.0       2.8   5.6e+03      43      75 ..     335     369 ..     326     377 .. 0.78
   3 ?    1.3   0.0      0.16   3.2e+02       9      55 ..     418     464 ..     413     479 .. 0.80
   4 ?   12.6   0.1   5.4e-05      0.11      12     123 ..     462     580 ..     446     598 .. 0.73
   5 ?    0.4   0.0      0.29   5.8e+02      26      99 ..     708     729 ..     689     769 .. 0.55
   6 ?   -1.9   0.1       1.5     3e+03      94     127 ..     886     917 ..     858     928 .. 0.51

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.02
        Cnd1  19 veylvepLrkrLkDe..dpyVRktaaivvakL....ilndmvkekgflselakll.eDenprVvanalaalteiseksenaiynllpdiisklsdalne 110
                 ++ lv++  + +kD+  d  VR   + ++  +     +  +vk  +fl+ + +l  ++en++++    +al  +++  +++++n l  ii+ +++ + +
  CCD25954.2 199 IDMLVDNFMNFIKDDnlDDLVRAEVIKCINCIiplqCQSFIVKIDDFLNVVFQLAqSNENNQIRIQLCIALGYLLDFRPDKLVNHLNGIIQFMLHLIGT 297
                 566666666777776224678887666655554426666689999999988887779**********************************99987776 PP

        Cnd1 111 csewg 115
                 ++ ++
  CCD25954.2 298 VNDEK 302
                 55444 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.8
        Cnd1  43 ivvakL.ilndmvkekgflselakll.eDenprVv 75 
                 ++++k+ +++d +   +  ++l + + eD+++ + 
  CCD25954.2 335 VLLTKMvYNKDAIAILESSNDLDDTIlEDKDEDIK 369
                 56788888899999988888888765599988876 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.16
        Cnd1   9 tlgcirvpnlveylvepLrkrLkDedpyVRktaaivvakLilndmvk 55 
                 ++++i  +++++   + Lr+ L+ e  y+R+ +++++  + + +m  
  CCD25954.2 418 AMTTILPRDVMDIAFPFLREHLTSEMWYIREATVLALGAMAEGGMKY 464
                 677888889999999********************998886666655 PP

  == domain 4  score: 12.6 bits;  conditional E-value: 5.4e-05
        Cnd1  12 cirvpnlveylvepLrkrLkDedpyVRktaaivvakL...ilndmvkekg.flselaklleDenprVvanalaalteisek.senaiynll..pdiisk 103
                 +  +++ +  l++ L ++LkD+ + VRk +  ++++    +l+d  +    +l+ +++ l D+++ V+++a+++     e+ ++++i   l   d++++
  CCD25954.2 462 MKYFNDQLPVLLPFLVEQLKDQWAPVRKITCWTLSRFsswVLQDHTEFLLpILEPILETLVDKKKVVQKSAISSVATFIENcDSELIEXTLlyTDLLQS 560
                 55667777778899999********************9999999999887799******************9999988888554444322222555555 PP

        Cnd1 104 lsdalnecsewgqitilefL 123
                 ++ + +  ++++ i  ++++
  CCD25954.2 561 FQRCFQFYKKKNLIILYDAV 580
                 55554445555555555555 PP

  == domain 5  score: 0.4 bits;  conditional E-value: 0.29
        Cnd1  26 LrkrLkDedpyVRktaaivvakLilndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpd 99 
                 +  +L+D+   VR+                                                     +y l  d
  CCD25954.2 708 VVVCLQDSVHEVRQ----------------------------------------------------SAYALWGD 729
                 33344444444444....................................................44444444 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 1.5
        Cnd1  94 ynllpdiisklsdalnecsewgqitilefLlsyi 127
                  + l++iis ls++  +++  + + i++fL++y 
  CCD25954.2 886 HTTLKNIISGLSEN-VDVNIFA-QDIYNFLMKYS 917
                 33334444444421.2222222.23555555554 PP

>> Spore_III_AB  Stage III sporulation protein AB (spore_III_AB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.6   7.1e+03      99     119 ..     741     761 ..     720     763 .. 0.74
   2 ?   10.0   0.1   0.00036      0.71      26      79 ..     864     922 ..     857     936 .. 0.80

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.6
                   GS---HHHHHHHHHHHHHHT- CS
  Spore_III_AB  99 klaLkkedkeilkelgeslgy 119
                    ++++++ keil+++ + +g+
    CCD25954.2 741 YFNVNEQNKEILSQILKFIGT 761
                   378899999999999998886 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00036
                   HHHHHHHHHHHHHHHHHHHHH-SS-HHHHHHHHHHCS-T.....THHHHHHHHHHHHH. CS
  Spore_III_AB  26 rlkeleelkralellegeirygatpLpealeklaekses.....plseffeevaerlee 79 
                   + ++   ++r+l++   +ir ++t+L+++++ l+e+++      ++ +f+ + +++l++
    CCD25954.2 864 KSETYMGFIRILNMTDERIRASHTTLKNIISGLSENVDVnifaqDIYNFLMKYSNDLQT 922
                   556777899*************************9988866666777777777777664 PP

>> ERK-JNK_inhib  ERK and JNK pathways, inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0082        16      44     113 ..     507     571 ..     500     586 .. 0.87
   2 ?    3.3   0.1      0.03        59      94     151 ..     725     791 ..     713     794 .. 0.86
   3 ?   -0.7   0.0      0.48   9.6e+02      95     114 ..     791     810 ..     782     831 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0082
  ERK-JNK_inhib  44 yklveillkkilkvleeskekLekadilpesdfpkdeklkdAlssvlENtaffgdlvLrlPdivhrilkk 113
                     +++  +l+ il++l ++k++++k++i +  +f     +++  s+++E t +++dl+  + + ++ + kk
     CCD25954.2 507 TEFLLPILEPILETLVDKKKVVQKSAISSVATF-----IENCDSELIEXTLLYTDLLQSFQRCFQFYKKK 571
                    5678889999*****************999999.....78888**************9998887765554 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.03
  ERK-JNK_inhib  94 affgdlvLrlPdivhrilkkqekwkelvrwalnftnesklldkktekl.........leLlaqelel 151
                    a+ gd+v  + d ++ +++ +e+ ke++ + l+f  +  +++++t  +         l+L++  l+l
     CCD25954.2 725 ALWGDMVYFFADKLNFYFNVNEQNKEILSQILKFIGTEIMHNDDTDGVsavmnaiwcLGLMSTRLNL 791
                    899***************************9999988889999988887777777777777766665 PP

  == domain 3  score: -0.7 bits;  conditional E-value: 0.48
  ERK-JNK_inhib  95 ffgdlvLrlPdivhrilkkq 114
                    +fgd vL +++iv +++ ++
     CCD25954.2 791 LFGDYVLDMSRIVLDLFVTK 810
                    9***********98887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (938 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.78u 0.28s 00:00:01.06 Elapsed: 00:00:00.46
# Mc/sec: 6192.82
//
Query:       CCD25955.2  [L=607]
Description: hypothetical protein NDAI_0G01790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-81  272.3   0.3    4.4e-81  272.3   0.3    1.8  2  Mannosyl_trans3  Mannosyltransferase putative
  ------ inclusion threshold ------
      0.088   13.1   0.2       0.22   11.8   0.2    1.6  1  Rx_N             Rx N-terminal domain


Domain annotation for each model (and alignments):
>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.17   1.6e+03      27      51 ..      50      74 ..      37     115 .. 0.66
   2 !  272.3   0.3   4.9e-85   4.4e-81       2     275 .]     179     450 ..     178     450 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.17
  Mannosyl_trans3 27 gnkLPIeivikk.eelekefcekilp 51
                      nkLPI+   +  ++ +kef  ++++
       CCD25955.2 50 INKLPIQSNSNVnDDTQKEFQ-HLVS 74
                     588999887777444444444.4444 PP

  == domain 2  score: 272.3 bits;  conditional E-value: 4.9e-85
  Mannosyl_trans3   2 kGIVisgggkesllalrlIkvLralgnkLPIeivikk.eel.ekefcekilpaaeepkqevwfvnakcvlnedylgkefk......gfqnKalA 87 
                      +GIV++gggk++++a++++k+Lr++g++LP+ei+i++ + + e+ fc+  +         +  + akc++++++l++e+       g+q+K+lA
       CCD25955.2 179 DGIVMVGGGKFTFMAYLVLKTLRNQGTTLPVEIFIPPiDTVkEETFCK-SEM--------LSELSAKCIYMSNILPQEMIekfdfkGYQFKSLA 263
                      7************************************88884445554.333........46***************9999****99******* PP

  Mannosyl_trans3  88 llfssFeevllLDaDnvplknpdklFeseeYkktglllwkdrdlwkrstspkfyeiae..........nklepskeeskyfgkkerekeseevp 171
                      +++ssFe+ llLDaDn+p+k++dk+F++e+Y++tgl++w  +d+w+r+t+p +y++a+          n +++ ++ + y +++    + +++p
       CCD25955.2 264 IIASSFENLLLLDADNFPIKSLDKIFKHEPYNSTGLVMW--PDFWRRTTQPIYYKLADiyvnvlkrvrNDIDDITPTKVYSDDNF---DFTKIP 352
                      ***************************************..*****************999999999888888888888887666...469*** PP

  Mannosyl_trans3 172 lhdlfgtipdhssesGlvvinKkkhlktLllalylnlygpk..ykllsqgaagegdKEtfwlaahvlgekYyfvkekaaaiGeltkkekkkses 263
                      +hd++gt+pd s+esG+++inK+khl t+llaly+n++gp+  y+ +sq+a+gegdKEtf++aa+++ +++y+v++k++a G++tk        
       CCD25955.2 353 FHDFEGTMPDDSTESGQLMINKSKHLPTVLLALYYNVNGPNwyYPIFSQNAHGEGDKETFIAAATFYRLPFYQVRTKVGADGYHTK-------- 438
                      **************************************************************************************........ PP

  Mannosyl_trans3 264 keicsaqlghld 275
                      +++++++++++d
       CCD25955.2 439 DRFQGVAMAQHD 450
                      49********98 PP

>> Rx_N  Rx N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   2.5e-05      0.22      38      75 ..     449     486 ..     445     508 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2.5e-05
        Rx_N  38 qavLedaeerqikdeavkeWlkelrdlaydaeDvlDef 75 
                 + +++d e  qi   ++k+  ++++d+ ydae ++ +f
  CCD25955.2 449 HDFIQDYEHYQIAQREIKKRYSNVKDIKYDAEYAVQKF 486
                 679******************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       738  (0.0411624); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4236.28
//
Query:       CCD25956.2  [L=222]
Description: hypothetical protein NDAI_0G01800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-12   47.6   0.0    3.6e-12   46.3   0.0    1.7  2  Glutaredoxin   Glutaredoxin
  ------ inclusion threshold ------
      0.018   15.4   0.0      0.058   13.8   0.0    1.9  1  GST_N_3        Glutathione S-transferase, N-terminal domain
        0.1   12.3   0.3        1.5    8.5   0.1    2.0  2  SpoIISA_toxin  Toxin SpoIISA, type II toxin-antitoxin system
       0.11   13.2   0.2       0.25   12.0   0.1    1.7  2  DUF3139        Protein of unknown function (DUF3139)


Domain annotation for each model (and alignments):
>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.4   1.1e+04       2      22 ..      25      48 ..      24      54 .. 0.65
   2 !   46.3   0.0     8e-16   3.6e-12       2      58 ..     115     177 ..     114     179 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.4
                  EEEES...TSSHHHHHHHHHHHHT CS
  Glutaredoxin  2 vlftk...ptCpyCkkakrlLkel 22
                  ++f+    +t+  +k+ k + ++ 
    CCD25956.2 25 FVFQNanaSTYTSSKALKSTITDT 48
                  555556667777788888777655 PP

  == domain 2  score: 46.3 bits;  conditional E-value: 8e-16
                   EEEESTSSHHHHHHHHHH.HHTTGG..EEEEEGCCSH...HHHHHHHHHHTSSSSSEEEETTE CS
  Glutaredoxin   2 vlftkptCpyCkkakrlL.kelgvk..feeidvdkde...eireelkelsgvrtvPqvfidgk 58 
                   v+f+k+ Cpy+k+ k+lL +++ ++    +i++dk+e   e+++++ke +g+ tvP++ i+g+
    CCD25956.2 115 VIFSKTFCPYSKALKELLsTNFQINpqPIVIELDKHEhgeELQAYIKEQTGRGTVPNLIINGN 177
                   8*****************65555555589*******9999*********************97 PP

>> GST_N_3  Glutathione S-transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.3e-05     0.058       5      70 ..     120     192 ..     116     194 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.3e-05
                 TTSHHHHHHHHHHHHHT-..-....EEEE---TTTTHHHH.HHH-TT--SSEEETTS-EEESHHHHHHHHHHH CS
     GST_N_3   5 paSpyarrvrlaLnekgl..p....vevvevtpgehdeel.laknplgkvPvLeddgealtdSlaIidyLeel 70 
                 +++py++  +++L    +  p    +e+ +++ ge  +++ ++++++g+vP L ++g +  +S+++ + ++e+
  CCD25956.2 120 TFCPYSKALKELLSTNFQinPqpivIELDKHEHGEELQAYiKEQTGRGTVPNLIINGNSKGGSDDMKKLFDEN 192
                 666766666666654433231334467777778888788846666********************99988875 PP

>> SpoIISA_toxin  Toxin SpoIISA, type II toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00032       1.5      64     108 ..      12      53 ..       7      64 .. 0.79
   2 ?    2.0   0.0     0.032   1.4e+02     113     148 ..     101     134 ..      73     171 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00032
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHHHHHH CS
  SpoIISA_toxin  64 ililaviiifiDlavlltpsikklgkaelekdiektikenekvlk 108
                    +li++ ++i+i ++v+++++ +   +++  k    ti + +++++
     CCD25956.2  12 VLITTCVLIVIGVFVFQNANASTYTSSKALK---STITDTNSIVQ 53 
                    799*****************99988877655...55555555544 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.032
                    HHHHHHHHHHHS-EEEE..ESSHHHHHHHHHHHHHH CS
  SpoIISA_toxin 113 rvetftellqnesihvyeeygskeayieglkkllks 148
                     ++++t +lq  +++++   ++   y + lk+ll++
     CCD25956.2 101 VAKEYTSILQRGPMVIF--SKTFCPYSKALKELLST 134
                    56888888888888888..55666677777777764 PP

>> DUF3139  Protein of unknown function (DUF3139)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.6e-05      0.25       6      44 ..      12      57 ..       7      92 .. 0.62
   2 ?   -3.0   0.0       2.6   1.2e+04      32      46 ..     149     163 ..     142     165 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.6e-05
     DUF3139  6 iililliillvivkvflglvgskpikkylankkldkyl...........q 44
                ++++ ++++++   vf+  + + +  +y++ k+l++++           +
  CCD25956.2 12 VLITTCVLIVIG--VFV--FQNANASTYTSSKALKSTItdtnsivqahgE 57
                333333333332..345..45667779***********777777644441 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.6
     DUF3139  32 kylankkldkylqek 46 
                 k+   ++l++y++e+
  CCD25956.2 149 KHEHGEELQAYIKEQ 163
                 566668889999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       810  (0.0451782); expected 358.6 (0.02)
Passed bias filter:                      548  (0.030565); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 1664.46
//
Query:       CCD25957.2  [L=476]
Description: hypothetical protein NDAI_0G01810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-36  124.1  11.7    5.5e-36  124.1  11.7    1.8  2  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1  11.7   3.1e-40   5.5e-36       4     319 ..      21     330 ..      18     337 .. 0.87
   2 ?   -2.2   1.6     0.084   1.5e+03      10      47 ..     398     436 ..     358     469 .. 0.54

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 3.1e-40
  Hyphal_reg_CWP   4 lialalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitstssllalsvtlasatgsieNnGiivf.nseeslt 97 
                     +i+l+ a++is +++  g  +++ +d+++++  ++ + +  ++++ +d +++n+g+l+i +tss+  +s++l   t + + +G +v+ n+++s +
      CCD25957.2  21 YITLTGAYDISDEQYLAGLSTVS-EDINVSNTGTFVVSHSPSVTIDSD-TITNDGNLCIGTTSSSSDMSISLDAGTLNNKADGRLVIsNGINSGQ 113
                     6899******************9.***********************9.9*********************88877777778999998999999* PP

  Hyphal_reg_CWP  98 assyklvgasFeNnGelylagsgsvvastmeitsnsweNnGlivfyqsqrss.gtvklgaalgsitNdGqIclknqayqqttsiqGsGCitvged 191
                     +ss++l  ++++N+G l ++ ++    +t+++  +s+ N+G i ++  + ++  ++ l+++++ i N+G+I ++ + +  +  i+G GC+ ++  
      CCD25957.2 114 TSSVNL--NTLNNEGYLRMELKD--DGETFAVS-DSFVNSGFIALKPVNPTDwVVLGLTTPSTGIVNSGTIDVSGTDVIFDHPITGGGCVMASGH 203
                     ******..9******55555555..57788776.***********98877774666788999********************************* PP

  Hyphal_reg_CWP 192 ssiyisnsllsissdqtiYLadsssslvvesvs.kpqt.fkvagFGngnkigltlpllgl.vlssisYdsdtgiLtlralllsqkFnIGtGYdss 283
                     s+++i n   ++++dqt++L ds+    +   + +++   k++g+G+ + igl  pl+++ +  ++ Y+++tgi++++++  + + +IGtGY+++
      CCD25957.2 204 SQMVI-N--TDYENDQTFWLGDSDDHYTAIFLTgTTKYiPKIRGYGGYHYIGLGEPLVENtGPATVLYNTTTGIVQVTTAGQTYTIDIGTGYNAT 295
                     ***99.4..459***********99988855553455558******************99888999************88778999********* PP

  Hyphal_reg_CWP 284 kFeivtdagagllsvqngavtYngpvPsrslPsaCq 319
                     k ++vt +++g     n+ ++Y ++  +  +Ps C+
      CCD25957.2 296 KVTTVTLVHSGGN-PPNKVLVYYDDSVTFPRPSICA 330
                     ***9998888877.4566555555555668999997 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.084
  Hyphal_reg_CWP  10 aleisent.vdrgainlgigdltInsgaylsiinnalsa 47 
                      leis++t + + + +++++++t+n++++ + +  ++ +
      CCD25957.2 398 NLEISSSTrIPELSSSTNTEETTVNTESSSKCVVMKTET 436
                     333444432333333333444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3423.07
//
Query:       CCD25958.2  [L=446]
Description: hypothetical protein NDAI_0G01820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.1e-189  628.3  10.3   6.3e-189  628.0  10.3    1.1  1  CSG2      Ceramide synthase regulator


Domain annotation for each model (and alignments):
>> CSG2  Ceramide synthase regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  628.0  10.3  3.5e-193  6.3e-189       1     397 []       2     437 ..       2     437 .. 0.98

  Alignments for each domain:
  == domain 1  score: 628.0 bits;  conditional E-value: 3.5e-193
        CSG2   1 msarllWftavlgYviqtkclskiqskkvlssleakekaa...........................daeseeeeskaltvyltfiyfaswllllPiar 72 
                 m+a++lWft+vlgYviqtk++s+iqsk++ s++++  +++                           +a++e  +s++ltvyltfiyfaswll+lPi+r
  CCD25958.2   2 MKAVALWFTIVLGYVIQTKGFSHIQSKRYPSNVQTPLHSNpnrdsysnstsaptlhgrsnipnatatTATGEPLNSHTLTVYLTFIYFASWLLILPISR 100
                 8999**********************************999************************9999999*************************** PP

        CSG2  73 llkeatkssvsekess.........kenklesnsessleleekvesdeeleekteeeklekvaekekkllsvstlkyvakllilslllviavltynlaL 162
                 +++e+t+ss++++ ss         ++n+ + ns+ssl+l++ +++d++l +k+++e       +e+++ls st+kyv+kl+ilsll+vi+v+tynlaL
  CCD25958.2 101 IWNETTSSSTFSTVSSndneqllplSMNDPNGNSSSSLSLDDGDTNDATLGDKIKKE-------EEFRVLSPSTFKYVCKLFILSLLAVINVFTYNLAL 192
                 ********9999988889999***99999*******************999998866.......799******************************** PP

        CSG2 163 slsPafdvaliqntsiFeivtLLygvcgiarrknvfrnflvmmvaligilivsYtkatCDlLaGklsinketGelnDpfLFDRLkgaLiCGLgaLtiGp 261
                 slsPafdvali+ntsiFeivtLLygvc+++r++++frnf+vmm+aligilivsYtkatCDlLaGklsin++tGe++DpfLFDRLkgaLiCGLgaLtiGp
  CCD25958.2 193 SLSPAFDVALIENTSIFEIVTLLYGVCNVSRKNYIFRNFFVMMIALIGILIVSYTKATCDLLAGKLSINQDTGEVTDPFLFDRLKGALICGLGALTIGP 291
                 *************************************************************************************************** PP

        CSG2 262 favlwnrWfa..........eskkaslvkqsehlsligiislilllpflpklssssesisllysdksfwltllvsilfGtlpnllsllelnrkaspeyl 350
                 favlwn+Wfa          + kka+l++qs+hl+lig+is++lllpflp+l+s +e+isllysdksfwlt+++s++fG+lpn+++++eln++a+peyl
  CCD25958.2 292 FAVLWNYWFAtttvtsptskSVKKATLTEQSSHLALIGCISMFLLLPFLPTLPSPNEYISLLYSDKSFWLTIMASVMFGILPNVIAMIELNNYAPPEYL 390
                 ******************999999*************************************************************************** PP

        CSG2 351 ttvnlgiiifmgladwiceptqttivrWeviGYimlsvscivLsvtl 397
                 tt++lgiiifmgladwiceptqt+ivrWeviGYimls+sc++L++tl
  CCD25958.2 391 TTCFLGIIIFMGLADWICEPTQTVIVRWEVIGYIMLSISCVILAFTL 437
                 ********************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3266.56
//
Query:       CCD25959.2  [L=314]
Description: hypothetical protein NDAI_0G01830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-45  154.4   0.0    2.1e-45  153.9   0.0    1.2  1  SCO1-SenC  SCO1/SenC
    0.00022   21.1   0.0    0.00081   19.3   0.0    1.9  1  AhpC-TSA   AhpC/TSA family
  ------ inclusion threshold ------
       0.12   12.1   0.0       0.47   10.2   0.0    1.9  1  Redoxin    Redoxin


Domain annotation for each model (and alignments):
>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.9   0.0   3.5e-49   2.1e-45       1     134 []     133     269 ..     133     269 .. 0.96

  Alignments for each domain:
  == domain 1  score: 153.9 bits;  conditional E-value: 3.5e-49
   SCO1-SenC   1 ggpFelvdqdgeavteedlegkpslvffgFthCpdvCpttlanmaevldalgeea.ekvqplfiTvDPerDtpevlkeyleafdpriigltGskeeiak 98 
                 gg+F+l d++g+++te+dl gk+s+++fgF+hCpd+Cp +l ++  +ld+l ++    +qp+fiT+DP+rD+ evlkeyl+ f++ iigltGs e++++
  CCD25959.2 133 GGDFTLYDENGKEFTEKDLLGKFSIIYFGFSHCPDICPDELDKLGVWLDELRKKYdIILQPIFITCDPARDSSEVLKEYLSDFHEGIIGLTGSYEQVKN 231
                 689***************************************************75789**************************************** PP

   SCO1-SenC  99 aakefrvyvekvedees..dytvdHsssvyLvdpdgrv 134
                  +k++rvy+++ ++ +   dy+vdHs ++yL+dp+g++
  CCD25959.2 232 CCKKYRVYFSTPPSVKPgqDYLVDHSIFFYLMDPEGQF 269
                 ********99888766667*****************97 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.3e-07   0.00081       7      82 ..     135     220 ..     129     288 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.3e-07
                 --EEESTTCEEEECHHHTTSEEEEEEESTST-C.CHHHHHHHHHHCHHHCCCT...TEEEEEEESSSCHHHHHHHHH-H........ CS
    AhpC-TSA   7 dfelknadgetvslsdykgkpvvlffypkdwcp.vCttelpalaklyeefker...gvevigvsvdspeshkkfiekes.......l 82 
                 df+l +++g++++ +d+ gk  +++f  + +cp  C++el +l   ++e++++    ++ i +++d+  ++ +  +++        +
  CCD25959.2 135 DFTLYDENGKEFTEKDLLGKFSIIYFGFS-HCPdICPDELDKLGVWLDELRKKydiILQPIFITCDPARDSSEVLKEYLsdfhegiI 220
                 8*************************999.89857****************774333577899999999998888888766666663 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.9e-05      0.47       8     108 ..     135     280 ..     128     289 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 7.9e-05
                 --ECCEETTCEEEEEHHHHTTSEEEEEEESTTT-HH..............................HHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHH CS
     Redoxin   8 dftlplaatdgnsvslsefkgkkvvvnfvpgafcPt..............................Csaehpyleklaellkekgvdvvavvadndafv 76 
                 dftl +  ++g++++ +++ gk  +++f  + +cP                               C +     e l+e   +   + ++  + + ++v
  CCD25959.2 135 DFTLYD--ENGKEFTEKDLLGKFSIIYFGFS-HCPDicpdeldklgvwldelrkkydiilqpifitCDPARDSSEVLKEY-LSDFHEGIIGLTGSYEQV 229
                 788866..99999999999999999999999.999888888888888888888888888888888888866566666655.333333344467788889 PP

                 HHHHHH...................TT-TSEEEE-TTSHHHHHTT-TTEEE CS
     Redoxin  77 kefwgk...................eglkfpvlsDgsaaftkalGlrleed 108
                 k+ ++k                   ++  f++l D++++f++alG +++e 
  CCD25959.2 230 KNCCKKyrvyfstppsvkpgqdylvDHSIFFYLMDPEGQFVEALGQNYDEE 280
                 99999999****************98989999*************776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2582.08
//
Query:       CCD25960.2  [L=1502]
Description: hypothetical protein NDAI_0G01840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-62  210.0  66.2    1.4e-38  132.5  20.4    2.7  3  ABC2_membrane    ABC-2 type transporter
    1.1e-38  132.8   0.0      7e-18   65.5   0.0    2.5  2  ABC_tran         ABC transporter
    3.6e-33  113.3  20.9    4.7e-32  109.8   0.0    3.8  3  PDR_CDR          CDR ABC transporter
    1.1e-07   31.3   8.7    1.1e-07   31.3   8.7    3.9  3  ABC2_membrane_3  ABC-2 family transporter protein
    2.9e-07   30.6   0.0    0.00034   20.5   0.0    2.6  2  RsgA_GTPase      RsgA GTPase
      3e-06   27.7   0.0     0.0033   17.8   0.0    2.5  2  AAA_16           AAA ATPase domain
    3.4e-06   27.6   0.3    7.8e-06   26.4   0.3    1.6  1  ABC_trans_N      ABC-transporter N-terminal
    3.9e-05   23.6   0.0      0.071   12.9   0.0    2.4  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00014   22.2   0.4     0.0045   17.3   0.1    2.7  2  AAA_22           AAA domain
    0.00023   21.2   0.1       0.15   12.1   0.1    2.7  2  MMR_HSR1         50S ribosome-binding GTPase
     0.0015   18.2   0.1      0.065   13.0   0.1    2.5  2  AAA_29           P-loop containing region of AAA domain
     0.0019   18.7   0.1      0.026   15.1   0.0    2.6  2  AAA_18           AAA domain
     0.0029   17.1   0.0        1.3    8.4   0.0    3.2  3  SMC_N            RecF/RecN/SMC N terminal domain
     0.0054   16.3   0.6      0.014   15.0   0.1    1.9  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
     0.0096   16.1   0.0      0.027   14.6   0.0    1.8  1  AAA_33           AAA domain
  ------ inclusion threshold ------
      0.015   15.3   0.7       0.31   11.0   0.1    2.4  2  NACHT            NACHT domain
      0.042   13.6   0.1        1.6    8.5   0.1    2.3  2  AAA_30           AAA domain
      0.047   13.4   0.5       0.42   10.3   0.0    2.8  3  AAA_24           AAA domain
      0.051   14.0   0.0        4.4    7.7   0.0    3.1  2  RNA_helicase     RNA helicase
      0.058   13.6   0.4       0.19   11.9   0.1    2.0  2  AAA_28           AAA domain
      0.078   13.5   0.2       0.41   11.1   0.0    2.2  2  AAA_23           AAA domain
      0.079   13.0   0.2       0.38   10.8   0.1    2.0  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.088   12.4   0.0       0.23   11.0   0.0    1.6  1  AAA_25           AAA domain
        0.1   11.9   0.2       0.22   10.7   0.0    1.6  2  Septin           Septin
          3    7.9   4.5        1.8    8.6   0.0    2.8  2  Dynamin_N        Dynamin family


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.5  20.4   1.9e-41   1.4e-38       1     210 []     496     704 ..     496     704 .. 0.97
   2 !   91.1  29.4   8.5e-29   6.1e-26       1     210 []    1166    1379 ..    1166    1379 .. 0.94
   3 ?   -3.6   1.3       8.3   5.9e+03      53     143 ..    1452    1467 ..    1437    1483 .. 0.44

  Alignments for each domain:
  == domain 1  score: 132.5 bits;  conditional E-value: 1.9e-41
  ABC2_membrane   1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsa 95 
                    +q+++++ r f++ ++++s++ + ++   +++a+++g++f+n + + +++++r g+l+f++l+++   l+++a+++  er++l+++  + ly+lsa
     CCD25960.2 496 EQVRLCTIRGFQRVYGNKSYT-VINICAAVIQAFIIGSLFYNSPsTAQGAFSRGGILYFMLLYYS---LMGLANISLEERPILQKHKGYSLYHLSA 587
                    599******************.99********************6666666**************...8888999********************* PP

  ABC2_membrane  96 yvlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm.pkw 188
                      l+++l+ +p+ ++  ++fl+i++fl++l+++  +ff+++++l +++ a+ +l+ ++ + + ++ +a+ ++++++l + l+s ++i ++sm p w
     CCD25960.2 588 EPLGSMLAGFPFRMIGLTLFLIIIFFLTNLHRTpsAFFIIYMFLTMCSEAINGLFQMVTSGCDTLAQANSITGVFMLAISLYSTYMIQLPSMhP-W 682
                    *********************************9999*******************************************************77.* PP

  ABC2_membrane 189 lqwiaylnPltyavealrsnlf 210
                    +qw++y+ P++ya+e++++++f
     CCD25960.2 683 FQWMSYVIPIRYAFESMLNAEF 704
                    *****************99987 PP

  == domain 2  score: 91.1 bits;  conditional E-value: 8.5e-29
  ABC2_membrane    1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysl 93  
                     +q+  +l+r+ +++wr+ +++ +++++   + +l +g+ f+++g+s  gl+++++ +f+ + ++  a+ +++   +  r ++ +re  s+++++
     CCD25960.2 1166 YQFVYVLRRTAITFWRNLNYI-MSKFMLFTVGGLYVGFTFFDVGTSYTGLQNAMFAAFISIIMSAPAMNQIQGRAIAARDLYeVRESKSNMFHW 1258
                     699******************.**********************999999898888888888888***************************** PP

  ABC2_membrane   94 sayvlakvlvelpvsllqalifllivyflvgldls...rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipids 184 
                     s  ++ ++l elp++l++++if++ +yf++ +  +   ++++fl +++++ l+++++gl++  +ap++  a++l +l l++l+ ++G+  p++ 
     CCD25960.2 1259 SLLLITQFLNELPYQLVFSTIFFVSSYFPLRIFFEasrSGVYFLNYCIVFPLYFVGFGLMVLYMAPNLPSANVLLGLALSFLIAFCGVTQPPSL 1352
                     ****************************975555555778****************************************************** PP

  ABC2_membrane  185 mp.kwlqwiaylnPltyavealrsnlf 210 
                     mp  w +++ + +P+ty+v+ l+++++
     CCD25960.2 1353 MPgFWRRFMWRTSPYTYYVQNLVGIML 1379
                     *9788889************9999985 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 8.3
  ABC2_membrane   53 pgllffsvlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifllivyflvgldlsrfflflllllltala 143 
                      g++ + ++f+                                                                            ++++
     CCD25960.2 1452 FGIFWIYIIFNL---------------------------------------------------------------------------FGMI 1467
                     222222222222...........................................................................1111 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   9.7e-21     7e-18       9     136 ..     178     330 ..     171     331 .. 0.88
   2 !   64.7   0.0   1.6e-20   1.2e-17       1     137 []     867    1018 ..     867    1018 .. 0.93

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 9.7e-21
                 ETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.....................HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxx RF
    ABC_tran   9 kegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.....................esd 82 
                 ++ge++ ++G+ GaG+S+Llk++ag+ ++     eGe+++dg + ke  +++++  + +  +++ +fp++tv+++                     +  
  CCD25960.2 178 EPGEMILVLGRPGAGCSSLLKTIAGEIDQfaggVEGEMTYDGISQKE-MMQKFKGDVIYNGEQDVHFPHITVQQTldfaiacktparrvnnvsreeY-- 273
                 79***************************888888888999988888.999********************************99999887655542.. PP

                 TC...HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xx...xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 ee...iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                       + +++ +gl ++ +t+v+++  + +SgG+++rv++a+al+ + +++++D++t
  CCD25960.2 274 -IvstRDLYATIFGLRHTYNTKVGNEYvRGISGGERKRVSIAEALAANGSIYCWDNAT 330
                 .044355556667888888999988888****************************99 PP

  == domain 2  score: 64.7 bits;  conditional E-value: 1.6e-20
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................ 79  
                  l+n+s  + +g+++a++Ge+GaGK+tLl++la+  +     G+il++g+++++    s++++ g+++q++ +  el+vre+                
  CCD25960.2  867 LDNISGYCIPGTMTALIGESGAGKTTLLNTLAQRNEIgvVTGDILVNGRPIDS----SFERRTGYVQQQDIHIAELSVRESlqfsarmrrpesvpde 959 
                  799*****************************99887789************9....*************************999999999988766 PP

                  HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran   80 esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137 
                  e+ + +ek+++ l+++e ++  v+  ++ L   q++++++   l+ kp+lll lDEpt+
  CCD25960.2  960 EKMAYVEKIIQVLDMEEYAEALVGAIGYGLNVEQRKKLSIGVELCAKPDLLLfLDEPTS 1018
                  56666******************9999**********************87649***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   6.5e-35   4.7e-32       1      88 [.     716     803 ..     716     806 .. 0.98
   2 ?   -2.0   0.8       4.9   3.5e+03      46      68 ..    1179    1202 ..    1161    1212 .. 0.64
   3 !   15.2   4.0   2.1e-05     0.015      31      72 ..    1434    1474 ..    1430    1482 .. 0.85

  Alignments for each domain:
  == domain 1  score: 109.8 bits;  conditional E-value: 6.5e-35
     PDR_CDR   1 vPsgpgyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlvfkrgka 88 
                 vP gpgyenv ++n+vCa+vG++pGq++V Gd+Yl+++f+y+++h+wrnfgi+++fli f+++ +++te+ +  +++g++lvfk+g++
  CCD25960.2 716 VPTGPGYENVADDNKVCAFVGSEPGQSWVLGDNYLRKQFQYEYKHTWRNFGIMWCFLIGFVVIRAVITEHKRPMQGGGDALVFKKGSE 803
                 8************************************************************************************986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.9
     PDR_CDR   46 lwrnfg.iliaflifflalyllat 68  
                   wrn+  i+  f++f +    + +
  CCD25960.2 1179 FWRNLNyIMSKFMLFTVGGLYVGF 1202
                  699986255566666555555555 PP

  == domain 3  score: 15.2 bits;  conditional E-value: 2.1e-05
     PDR_CDR   31 GddYlelsfgyssshlwrnfgiliaflifflalyllatelis 72  
                  Gd+Yl  + + s+s lwrnfgi + ++if l+  + +  +++
  CCD25960.2 1434 GDEYLT-RMESSYSYLWRNFGIFWIYIIFNLFGMIAVYYIFH 1474
                  99***9.99*******************99887776665555 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   2.8       3.3   2.3e+03     108     163 ..       9      63 ..       3      75 .. 0.69
   2 !   31.3   8.7   1.5e-10   1.1e-07     160     342 ..     541     778 ..     532     781 .. 0.75
   3 ?    0.1  15.6      0.49   3.5e+02     212     338 ..    1271    1461 ..    1199    1470 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 3.3
  ABC2_membrane_3 108 snlnsskailnalnsllqqlnasalvlqseatstsaninvestqleeelsnvasfl 163
                      s +n+ k+  +  ++ +++ + ++++ +++++++  +i++++ ++++++++ +  +
       CCD25960.2   9 SSPNVGKEYHSDNQNTYNMDTLAETH-TNNTKVDQPPIKTTTNNKKNYSNGNEESF 63 
                      44555555555555666666655554.78888999999999999988888876654 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 1.5e-10
  ABC2_membrane_3 160 asflvg..liliilifitasfiavsi.veEkesrike....lqlvsgvsplqywlskilgdflvyllqlllilllafglgipfg..nlglllll 244
                      a+ +++   il++++++++++ +++i +eE+    k+    l  +s   pl  +l+ +    +++l+ +l+i++++ +  ++ +   ++++  +
       CCD25960.2 541 AQGAFSrgGILYFMLLYYSLMGLANIsLEERPILQKHkgysLYHLS-AEPLGSMLAGF-PFRMIGLTLFLIIIFFLTN--LHRTpsAFFIIYMF 630
                      5555555544444544444444444436776655454111133333.34444444444.3334566666666666777..55553144445566 PP

  ABC2_membrane_3 245 fllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapglgllrl.itgdplwe............. 324
                      + + + a+  l+ +++s +++ + a++++++++l +s+++++++ l++++ +++w +++iP+ + ++++l+    g   ++             
       CCD25960.2 631 LTMCSEAINGLFQMVTSGCDTLAQANSITGVFMLAISLYSTYMIQLPSMHPWFQWMSYVIPIRYAFESMLNAeFHGR-HMDcggtlvptgpgye 723
                      666677999***************************************************************65555.5567888888899999 PP

  ABC2_membrane_3 325 .....................................illsliilalfavvylll 342
                                                           ++++++i+++f + ++++
       CCD25960.2 724 nvaddnkvcafvgsepgqswvlgdnylrkqfqyeykhTWRNFGIMWCFLIGFVVI 778
                      9*************************************************99987 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.49
  ABC2_membrane_3  212 gdflvyllqlllilllafglgipfg..nlglll.llfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwi 300 
                        + lv+ +++++  ++ +   i+f+   +g+ +  + ++f l ++ +g+++ ++  n  +a++l+++ +++l++f+g++ p + +p++++ +
       CCD25960.2 1271 PYQLVFSTIFFVSSYFPLR--IFFEasRSGVYFlNYCIVFPLYFVGFGLMVLYMAPNLPSANVLLGLALSFLIAFCGVTQPPSLMPGFWRRF 1360
                       5667777777777777555..55554488876647889999***********************9999999*******************98 PP

  ABC2_membrane_3  301 fs.iiPffapglgllrli............tgdplwe....................................................... 324 
                       ++   P +++ + l+ ++                  +                                                       
       CCD25960.2 1361 MWrTSPYTYYVQNLVGIMlhkkpvicsekeL-----Nyfappsgqtcgeymepflsratgyitdpastsncsyclykvgdeyltrmessysy 1447
                       8725588888888888886665555555442.....03334566677777778888888888888888888888888888888888888888 PP

  ABC2_membrane_3  325 illsliilalfavv 338 
                       ++++++i ++ +++
       CCD25960.2 1448 LWRNFGIFWIYIIF 1461
                       88888888888776 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.007         5      99     131 ..     180     212 ..     154     218 .. 0.81
   2 !   20.5   0.0   4.8e-07   0.00034      89     125 ..     866     903 ..     851     915 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.007
                  TSEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpelelktgevs 131
                  +++++++G  G+G S+L++++++e ++  g v 
   CCD25960.2 180 GEMILVLGRPGAGCSSLLKTIAGEIDQFAGGVE 212
                  378999******************999877765 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 4.8e-07
                  THHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  89 gleelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                   l++++ ++    +++l+G+SG+GK+tL+n+l++++e+
   CCD25960.2 866 LLDNISGYCIPgTMTALIGESGAGKTTLLNTLAQRNEI 903
                  55666655544499******************997654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0084         6      12      49 ..     170     205 ..     163     232 .. 0.81
   2 !   17.8   0.0   4.6e-06    0.0033      13      68 ..     867     916 ..     860    1046 .. 0.55

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0084
      AAA_16  12 LlsalervrsgrpelvllsGesGvGKsslvrellrale 49 
                 +++++  +  g  e++l+ G +G G ssl+++++ ++ 
  CCD25960.2 170 IRNCYALAEPG--EMILVLGRPGAGCSSLLKTIAGEID 205
                 57777644444..8*****************9987665 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 4.6e-06
      AAA_16  13 lsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaip 68 
                 l+ ++  + ++  ++ l+GesG GK++l+++l++   ++++ +++g+   +  ++p
  CCD25960.2 867 LDNISGYCIPG-TMTALIGESGAGKTTLLNTLAQ---RNEIGVVTGDILVN--GRP 916
                 44444444444.7999*****************7...55566766666666..222 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.3   1.1e-08   7.8e-06       6      81 .]      81     147 ..      46     147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 26.4 bits;  conditional E-value: 1.1e-08
  ABC_trans_N   6 lsrqssssssssssesssedeeeedseFdlekwlknlreridrdgikprklGVvFknLtVeGvgsgadyqpTvgna 81 
                  lsr++++s        s + ++++   F+ e++++++++ +d++gi++rk GV+ ++  ++G  ++a   +T+g++
   CCD25960.2  81 LSRHTTRS-------GSFNTDSDDG--FNIEAIFSRFVRDADEQGIHLRKSGVTLEGVGAQGLDTSALEGSTFGSF 147
                  44432222.......2345555555..*********************************************9986 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   9.8e-05     0.071       1     102 [.     879     967 ..     879     999 .. 0.61
   2 !    8.2   0.0    0.0026       1.9     259     299 ..    1009    1049 ..    1001    1052 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 9.8e-05
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv..eeklssvetllesg 97 
                 +++liG  g+GK++LL +l                +++  g    + l +++ ++++fe ++  +++q++ +      e  q+  +++ +++ +++e++
  CCD25960.2 879 MTALIGESGAGKTTLLNTL---------------AQRNEIGVVTGDILVNGRPIDSSFERRTGYVQQQDIHIAELSVRESLQFsaRMRRPESVPDEEKM 962
                 699****************...............34444444444555555555555555555444444443333333333334444444444455555 PP

      AAA_21  98 llldk 102
                  ++ k
  CCD25960.2 963 AYVEK 967
                 55555 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0026
      AAA_21  259 sllliDEpEngLHPkllrrllellkelsrngaQviltTHSp 299 
                   ll++DEp +gL+ +    +++llk+l+  g  +++t H+p
  CCD25960.2 1009 LLLFLDEPTSGLDSQSSWAIIQLLKRLTHAGQSILCTVHQP 1049
                  69**********************99998555556666766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.36   2.6e+02       5      29 ..     180     204 ..     177     231 .. 0.86
   2 !   17.3   0.1   6.2e-06    0.0045       6      30 ..     878     902 ..     876     916 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.36
      AAA_22   5 agilvvtGesGtGKTtllrrlleql 29 
                   +++v G +G+G + ll++++ + 
  CCD25960.2 180 GEMILVLGRPGAGCSSLLKTIAGEI 204
                 5699***************988765 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 6.2e-06
      AAA_22   6 gilvvtGesGtGKTtllrrlleqld 30 
                 ++++++GesG+GKTtll++l+++++
  CCD25960.2 878 TMTALIGESGAGKTTLLNTLAQRNE 902
                 6899*****************9985 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.014        10       2      22 ..     183     203 ..     182     218 .. 0.86
   2 !   12.1   0.1   0.00022      0.15       3      23 ..     881     901 ..     879     920 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.014
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 ++++Grp +G S+L++++ ge
  CCD25960.2 183 ILVLGRPGAGCSSLLKTIAGE 203
                 789***************997 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00022
                 EEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgek 23 
                 a++G + +GK+tL+n+l +++
  CCD25960.2 881 ALIGESGAGKTTLLNTLAQRN 901
                 89***************9873 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.19   1.4e+02      22      39 ..     179     197 ..     171     201 .. 0.81
   2 !   13.0   0.1     9e-05     0.065      23      40 ..     877     895 ..     868     899 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.19
      AAA_29  22 kg.atlltGpsGsGKSTll 39 
                  g ++l+ G+ G+G S+ll
  CCD25960.2 179 PGeMILVLGRPGAGCSSLL 197
                 34499************98 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 9e-05
      AAA_29  23 g.atlltGpsGsGKSTllD 40 
                 g +t l+G+sG+GK+Tll 
  CCD25960.2 877 GtMTALIGESGAGKTTLLN 895
                 4589*************96 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.3   9.6e+02       1      25 [.     183     209 ..     183     242 .. 0.75
   2 !   15.1   0.0   3.6e-05     0.026       3      57 ..     882     934 ..     881    1011 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.3
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.g 25 
                 Il+ G pG+G ++l k ++ +  +f g
  CCD25960.2 183 ILVLGRPGAGCSSLLKTIAGEIdQFaG 209
                 89*************999777555552 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.6e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkl 57 
                 l G +G+GKttl + L++r+++gv+ +d++ ++++ ++ ++   +   + ++d +
  CCD25960.2 882 LIGESGAGKTTLLNTLAQRNEIGVVTGDILVNGRPIDSSFER--RTGYVQQQDIH 934
                 7899***************99988888888888888888888..44444444433 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.13        95     135     187 ..     120     349 ..      13     381 .. 0.64
   2 ?    1.9   0.0      0.17   1.2e+02      25      44 ..     878     897 ..     870     899 .. 0.88
   3 !    8.4   0.0    0.0018       1.3     157     208 ..    1006    1057 ..    1002    1069 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.13
                 T.................................................................................................. CS
                 x.................................................................................................. RF
       SMC_N 135 e.................................................................................................. 135
                                                                                                                    
  CCD25960.2 120 Rksgvtlegvgaqgldtsalegstfgsflmlpytiykkfkakkrmkmrqiirncyalaepgemilvlgrpgagcssllktiageidqfaggvegemtyd 218
                 055555555555555555555555555555555555555555555555555556666666666666666666666666666666666666666666666 PP

                 ...................................................................................CS-HHHHHHHHHHHHH CS
                 ...................................................................................xxxxxxxxxxxxxxxx RF
       SMC_N 136 ...................................................................................lLSgGektLvalaLlf 151
                                                                                                     +SgGe++ v++a  +
  CCD25960.2 219 gisqkemmqkfkgdviyngeqdvhfphitvqqtldfaiacktparrvnnvsreeyivstrdlyatifglrhtyntkvgneyvrGISGGERKRVSIAEAL 317
                 66666666666666666667777777777777777777777777777777777777777777777777777777777777777799*****99999988 PP

                 HHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 152 AiqkvkpaplyllDeidaaLDeknvkkvaellkeks 187
                 A +     ++y+ D+    LD++   ++a+ ++  +
  CCD25960.2 318 AAN----GSIYCWDNATRGLDASTALEYAKAIRIMT 349
                 865....57999999999999999999999887444 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.17
                 SEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAi 44 
                  +ta++G+ G+GK+ ll+ +
  CCD25960.2 878 TMTALIGESGAGKTTLLNTL 897
                 689***********999865 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.0018
                  S--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  157 kpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadkl 208 
                  kp  l +lDe  + LD +   ++ +llk+ ++  Q i  ++++   +  +++
  CCD25960.2 1006 KPDLLLFLDEPTSGLDSQSSWAIIQLLKRLTHAGQSILCTVHQPSATLFEQF 1057
                  7888999*******************************99998766555554 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       3.3   2.3e+03       3      21 ..     183     201 ..     182     211 .. 0.84
   2 !   15.0   0.1   1.9e-05     0.014       2      37 ..     879     911 ..     878     938 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.3
                 EEEEESTTCCHHHHHHHHH CS
        cobW   3 tvltGflGsGKTtLlnhll 21 
                 +++ G +G+G ++Ll+++ 
  CCD25960.2 183 ILVLGRPGAGCSSLLKTIA 201
                 578899*********9986 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 1.9e-05
                 EEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-S CS
        cobW   2 vtvltGflGsGKTtLlnhllenraglklavivNefg 37 
                 +t l G  G+GKTtLln+l ++   +++ v+++++ 
  CCD25960.2 879 MTALIGESGAGKTTLLNTLAQR---NEIGVVTGDIL 911
                 57889999***********977...78999999986 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.7e-05     0.027       3      35 ..     881     913 ..     879     962 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 3.7e-05
      AAA_33   3 llvGlpGsGKstlaerllkklgavllssdtlrr 35 
                  l+G +G+GK+tl+  l++++   +++ d+l +
  CCD25960.2 881 ALIGESGAGKTTLLNTLAQRNEIGVVTGDILVN 913
                 689********************9***999654 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.21   1.5e+02       2      24 ..     182     204 ..     181     209 .. 0.89
   2 ?   11.0   0.1   0.00043      0.31       3      22 ..     880     899 ..     878     909 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.21
                 CEEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklalaw 24 
                 ++++ G++G G + Ll+ +a ++
  CCD25960.2 182 MILVLGRPGAGCSSLLKTIAGEI 204
                 689****************9776 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00043
                 EEEEC-TTTCHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklal 22 
                  +l Ge+G GKTtLl  la+
  CCD25960.2 880 TALIGESGAGKTTLLNTLAQ 899
                 5799*************998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.14        99      13      43 ..     175     205 ..     164     224 .. 0.82
   2 ?    8.5   0.1    0.0022       1.6      18      40 ..     877     899 ..     859     905 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.14
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalreawe 43 
                 +l+++  + ++ G++G+G + +lk+++  ++
  CCD25960.2 175 ALAEPGEMILVLGRPGAGCSSLLKTIAGEID 205
                 566777899***************9976554 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0022
      AAA_30  18 drvavltGpAGtGKttalkalre 40 
                   +++l G  G+GKtt+l++l++
  CCD25960.2 877 GTMTALIGESGAGKTTLLNTLAQ 899
                 45899**************9976 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.2   1.6e+03       4      22 ..     182     200 ..     180     245 .. 0.85
   2 ?   10.3   0.0   0.00059      0.42       4      22 ..     879     897 ..     877     948 .. 0.83
   3 ?   -2.4   0.0       4.7   3.4e+03     102     123 ..    1127    1149 ..    1115    1153 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 2.2
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 +il+ G +g+G ++l+k++
  CCD25960.2 182 MILVLGRPGAGCSSLLKTI 200
                 799************9998 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00059
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 + +++G+sg+GKTtl+++l
  CCD25960.2 879 MTALIGESGAGKTTLLNTL 897
                 6789*************99 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 4.7
      AAA_24  102 kG.ygelaeefrrllkklqelrk 123 
                  +  y+e+++e+++l++ l+e ++
  CCD25960.2 1127 SSeYKEVTNEVTSLIEELREKPD 1149
                  4459************9998665 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.27   1.9e+02       1      49 [.     183     231 ..     183     242 .. 0.84
   2 ?    7.7   0.0    0.0061       4.4       3      23 ..     882     902 ..     880     967 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.27
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYtg 49 
                   i++ G++g G S+l k++a ++ +  +  + + +y + ++++++++++g
    CCD25960.2 183 ILVLGRPGAGCSSLLKTIAGEIDQFAGGVEGEMTYDGISQKEMMQKFKG 231
                   6799***************999988877777888878888888777765 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0061
  RNA_helicase   3 lyGpsgeGKStlakeLakall 23 
                   l G+sg GK+tl ++La++ +
    CCD25960.2 882 LIGESGAGKTTLLNTLAQRNE 902
                   78*************998765 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       4.5   3.3e+03       2      21 ..     183     205 ..     182     348 .. 0.54
   2 ?   11.9   0.1   0.00027      0.19       3      27 ..     881     906 ..     879     915 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.5
      AAA_28   2 ivitGgestGKTtlleaLa...a 21 
                 i ++G +++G ++ll+ +a   +
  CCD25960.2 183 ILVLGRPGAGCSSLLKTIAgeiD 205
                 56777777777777777773331 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00027
      AAA_28   3 vitGgestGKTtlleaLaar.gypvv 27 
                 +++G +++GKTtll+ La+r ++ vv
  CCD25960.2 881 ALIGESGAGKTTLLNTLAQRnEIGVV 906
                 799***************99545444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00057      0.41      21      39 ..     879     897 ..     876     943 .. 0.93
   2 ?   -1.6   0.0       4.6   3.3e+03      86     123 ..    1093    1150 ..    1063    1170 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00057
      AAA_23  21 ltlItGpNGaGKTTildAi 39 
                 +t+++G+ GaGKTT+l+ +
  CCD25960.2 879 MTALIGESGAGKTTLLNTL 897
                 799*************976 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 4.6
      AAA_23   86 y...................trsiererelskkkgkttkkaklellei.deleqfise 123 
                  +                   t si+++ + ++k+++++k+ + e ++  +el+++ +e
  CCD25960.2 1093 KcspkenpaeyileiigagaTASIKEDWHSIWKNSSEYKEVTNEVTSLiEELREKPDE 1150
                  3333333333333333333355677777777777777766666666555666666665 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.9   2.1e+03       7      42 ..     166     203 ..     160     208 .. 0.75
   2 ?   10.8   0.1   0.00052      0.38      18      45 ..     874     903 ..     859     908 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.9
                 HHHHHHHHHHCH..TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE   7 tealgkklakal..gdvilLeGdLGaGKTtlvrglaka 42 
                 ++++ +++ + +  g++il  G  GaG + l + +a +
  CCD25960.2 166 MRQIIRNCYALAepGEMILVLGRPGAGCSSLLKTIAGE 203
                 55555555554467889***************999865 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00052
                 H..TEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE  18 l..gdvilLeGdLGaGKTtlvrglakalgv 45 
                 +  g++ +L G+ GaGKTtl   la+  ++
  CCD25960.2 874 CipGTMTALIGESGAGKTTLLNTLAQRNEI 903
                 35677899****************998765 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00032      0.23      21      54 ..     865     898 ..     858     904 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00032
      AAA_25  21 prrwlvkgllpagelallaGapgtGKttlaldla 54 
                 ++ + + g+ + g+ ++l+G +g+GKttl+  la
  CCD25960.2 865 KLLDNISGYCIPGTMTALIGESGAGKTTLLNTLA 898
                 555678899999*****************97776 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       7.6   5.4e+03       7      27 ..     183     203 ..     182     228 .. 0.82
   2 ?   10.7   0.0   0.00031      0.22       9      31 ..     882     904 ..     877     945 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 7.6
                 EEEEEBTTSSCCCCCCTTSSS CS
      Septin   7 lmvvGesglGkttlintlfet 27 
                 ++v G+ g G ++l++t+  +
  CCD25960.2 183 ILVLGRPGAGCSSLLKTIAGE 203
                 7999************98765 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00031
                 EEEBTTSSCCCCCCTTSSSS--- CS
      Septin   9 vvGesglGkttlintlfetdlie 31 
                 ++Gesg Gkttl+ntl +++ i 
  CCD25960.2 882 LIGESGAGKTTLLNTLAQRNEIG 904
                 68**************9998765 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       1.6   1.2e+03       1      21 [.     183     203 ..     183     204 .. 0.94
   2 ?    8.6   0.0    0.0026       1.8       2      36 ..     881     917 ..     880     977 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 1.6
                 EEEEEBTTTTHHHHHHHHHTS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlge 21 
                 i+v+G   +G SS+l  + ge
  CCD25960.2 183 ILVLGRPGAGCSSLLKTIAGE 203
                 789***************997 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0026
                 EEEEBTTTTHHHHHHHHHTS--S-..--SSS---S-E CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilp..rgpnptTrrpl 36 
                 a++G+  +GK+++ln L +++     +g +++  rp+
  CCD25960.2 881 ALIGESGAGKTTLLNTLAQRNEIGvvTGDILVNGRPI 917
                 689***************9984432355555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       947  (0.0528195); expected 358.6 (0.02)
Passed bias filter:                      568  (0.0316805); expected 358.6 (0.02)
Passed Vit filter:                        96  (0.00535445); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 1.04u 0.28s 00:00:01.32 Elapsed: 00:00:00.43
# Mc/sec: 10506.76
//
Query:       CCD25961.2  [L=1500]
Description: hypothetical protein NDAI_0G01850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-66  222.8  62.7    3.5e-41  140.9  16.8    3.0  3  ABC2_membrane    ABC-2 type transporter
      8e-39  133.3   0.0    7.5e-18   65.4   0.0    2.7  2  ABC_tran         ABC transporter
    1.6e-36  124.1   7.8    5.3e-31  106.4   0.0    3.4  3  PDR_CDR          CDR ABC transporter
    1.1e-07   32.3   0.1    2.7e-07   31.1   0.1    1.7  1  ABC_trans_N      ABC-transporter N-terminal
    4.2e-06   26.1  33.7    6.1e-06   25.6   6.5    3.3  3  ABC2_membrane_3  ABC-2 family transporter protein
    6.7e-06   26.1   0.1    0.00061   19.7   0.0    2.4  2  RsgA_GTPase      RsgA GTPase
    4.7e-05   23.4   0.0      0.033   14.0   0.0    2.6  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    0.00012   22.5   0.2     0.0068   16.8   0.0    2.5  2  AAA_16           AAA ATPase domain
     0.0037   17.5   0.0      0.014   15.7   0.0    2.0  1  AAA_22           AAA domain
     0.0044   16.7   0.1      0.098   12.4   0.1    2.5  2  AAA_29           P-loop containing region of AAA domain
     0.0047   17.0   0.3       0.14   12.2   0.1    2.7  2  MMR_HSR1         50S ribosome-binding GTPase
  ------ inclusion threshold ------
      0.017   14.7   0.1      0.032   13.8   0.1    1.4  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.024   15.2   0.0      0.085   13.4   0.0    2.0  1  AAA_18           AAA domain
      0.051   13.0   0.0        1.9    7.8   0.0    2.8  3  SMC_N            RecF/RecN/SMC N terminal domain
      0.056   13.8   0.0        2.9    8.3   0.0    3.1  2  RNA_helicase     RNA helicase
      0.073   12.8   0.0       0.22   11.2   0.0    1.8  1  AAA_24           AAA domain
       0.11   12.3   0.4        1.3    8.7   0.0    2.2  2  AAA_30           AAA domain
       0.14   11.8   0.1       0.39   10.3   0.0    1.7  2  AAA_25           AAA domain
       0.18   12.0   0.0       0.34   11.1   0.0    1.5  1  AAA_28           AAA domain
       0.32   10.9   0.8       0.59   10.0   0.1    1.8  2  NACHT            NACHT domain


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.9  16.8   3.9e-44   3.5e-41       2     210 .]     500     707 ..     499     707 .. 0.97
   2 !   94.1  30.4   8.7e-30   7.8e-27       1     210 []    1170    1382 ..    1170    1382 .. 0.96
   3 ?   -2.7   0.8       3.5   3.1e+03     129     150 ..    1454    1475 ..    1441    1481 .. 0.65

  Alignments for each domain:
  == domain 1  score: 140.9 bits;  conditional E-value: 3.9e-44
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsay 96 
                    qi++++kr f+++++++s++ + ++   +++++++g++f+n++ +++++++r g+l+f++l+++   l+++a++++  r++l+++  + ly++sa 
     CCD25961.2 500 QILLCTKRGFQRIYGNKSYT-VINTCAAIIQSFIVGSLFYNTPsTTNGAFSRGGVLYFALLYYS---LMGLANISFENRPILQKHKGYSLYHPSAE 591
                    99******************.99********************7788888**************...8888999********************** PP

  ABC2_membrane  97 vlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm.pkwl 189
                    ++a++++e+p+ ++  ++f++i yfl gl+ s  +ff+++l+l lt+  +s ++ +i++ + ++ +a+ + ++++l + l+s ++i ++sm p w+
     CCD25961.2 592 AIASTISEFPFRMIGRTLFIIILYFLAGLHTSagAFFMVYLFLTLTTEGISLMFEMIASACDTLAQANAINGVLMLAISLYSTYMIQLPSMhP-WF 686
                    ********************************9999*******************************************************77.** PP

  ABC2_membrane 190 qwiaylnPltyavealrsnlf 210
                    qwi+y++P++y++e++++++f
     CCD25961.2 687 QWISYVLPIRYGFESMLNAEF 707
                    ****************99987 PP

  == domain 2  score: 94.1 bits;  conditional E-value: 8.7e-30
  ABC2_membrane    1 tqikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysl 93  
                     +q+  +l+r+ l++wr+ +++ +++++     +l++g+ f+++g+s  gl+++++ +f+ + +a  a+ ++++  +  r ++ +re  s+++++
     CCD25961.2 1170 YQFNYVLRRTSLTFWRNLNYI-MSKMMLLTTGGLFIGFTFFGVGSSYTGLQNAMFAAFISIIMAAPAMNQIQARAIAARDLFeVRESKSNMFHW 1262
                     6999*****************.**********************999999999999999999999***************************** PP

  ABC2_membrane   94 sayvlakvlvelpvsllqalifllivyflv..gldls.rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipids 184 
                     s  ++ ++l elp+ ll+++if++ +yf++   ++ s ++++fl +++++ l+ +++gl++  ++p++  a+++ +l l++l+ ++G+  p++ 
     CCD25961.2 1263 SLLLITQFLNELPYHLLFSTIFFVSSYFPLrnFFQASrSGVYFLNYCIMYQLYYVGFGLMVLYVSPNLPSANVILGLCLSFLISFCGVTQPPSL 1356
                     ****************************976556666779****************************************************** PP

  ABC2_membrane  185 mpkwlqwiaylnPltyavealrsnlf 210 
                     mp+++ ++ +++Plty+v+ ++++++
     CCD25961.2 1357 MPGFWTFMWKASPLTYFVQNMIGIML 1382
                     *******************9999985 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.5
  ABC2_membrane  129 rfflflllllltalaasslgll 150 
                     +f++f++++++ ++a++sl  l
     CCD25961.2 1454 NFGIFWIYIVFNIIAMVSLYYL 1475
                     4677777777777777776554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.0   9.5e-21   8.5e-18       1     136 [.     173     333 ..     173     334 .. 0.91
   2 !   65.4   0.0   8.4e-21   7.5e-18       1     137 []     872    1022 ..     872    1022 .. 0.91

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 9.5e-21
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................ CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................ RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................ 79 
                 l+nv++  k+ge+v ++G+ GaG+S++lk+ ag+ ++     +G+i++dg + ke  ++++++ + +  + + +fp ltv+++                
  CCD25961.2 173 LNNVNVLAKAGEMVLVLGRPGAGCSSFLKVTAGEIDQfaggIKGDITYDGIPQKE-MMKHYKADVIYNGELDVHFPFLTVQQTldfaiacktpanrvng 270
                 79***********************************888889999999999998.9****************************************99 PP

                 .....HHHTCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 .....xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .....esdeeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                      + ++  e +++ +gl ++ +t+v+++  + +SgG+++rv++a+al+ + +++++D++t
  CCD25961.2 271 vskaeYIQSTRELYATIFGLRHTYQTKVGNDFvRGVSGGERKRVSIAEALAANGSIYCWDNAT 333
                 988884444455556667777777999988888****************************99 PP

  == domain 2  score: 65.4 bits;  conditional E-value: 8.4e-21
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--.SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH................H CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................x RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkp.teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren................e 80  
                  l++vs  + +g+++a++Ge+GaGK+tLl++la+       G++l++g+++++    s++++ig+++q++ +  el+vre+                e
  CCD25961.2  872 LDHVSGYCVPGTMTALMGESGAGKTTLLNTLAQRNVGiITGDMLINGRPIDS----SFERRIGYVQQQDIHIAELSVRESlqfsarmrrdqripdsE 964 
                  68899999***********************98766559************9....*************************9999987766665444 PP

                  HHTC...HHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                  xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran   81 sdee...iekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137 
                     +   +ek+++ lg++  ++  v++ ++ L   q++++++   l+ kp+lll lDEpt+
  CCD25961.2  965 ---KlayVEKIIQVLGMEPYAEALVGDVGRGLNVEQRKKLSIGVELVAKPDLLLfLDEPTS 1022
                  ...1556*******************************************987549***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   5.9e-34   5.3e-31       1      88 [.     719     806 ..     719     810 .. 0.98
   2 ?   -2.2   0.2       4.5     4e+03      29      62 ..    1159    1191 ..    1153    1204 .. 0.60
   3 !   20.4   0.8     4e-07   0.00036      31      68 ..    1437    1473 ..    1433    1494 .. 0.87

  Alignments for each domain:
  == domain 1  score: 106.4 bits;  conditional E-value: 5.9e-34
     PDR_CDR   1 vPsgpgyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelisaekskgevlvfkrgka 88 
                 vP gpgyenv ++n+vCa+vG++pGq++V GddYl+++f+y+++h+wrnfgi+++fl+ +l++++++te+ +  k++g+++++k+g++
  CCD25961.2 719 VPTGPGYENVADDNKVCAFVGSEPGQSWVLGDDYLKKQFQYEYKHTWRNFGIIWCFLLGYLCVKAVITEFKRPVKGGGDAMLYKKGTK 806
                 8************************************************************************************987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.5
     PDR_CDR   29 VsGddYlelsfgyssshlwrnfgiliafliffla 62  
                  V+  +Y   s+ y+ + + r  + ++   + +++
  CCD25961.2 1159 VNTAKYAT-SYAYQFNYVLRRTSLTFWRNLNYIM 1191
                  66777766.8888888765555444443333333 PP

  == domain 3  score: 20.4 bits;  conditional E-value: 4e-07
     PDR_CDR   31 GddYlelsfgyssshlwrnfgiliaflifflalyllat 68  
                  Gd+Yl+ s +  +s+lwrnfgi + +++f +++ + + 
  CCD25961.2 1437 GDNYLA-SISAPYSNLWRNFGIFWIYIVFNIIAMVSLY 1473
                  99***9.99********************999887665 PP

>> ABC_trans_N  ABC-transporter N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1     3e-10   2.7e-07       2      81 .]      54     150 ..      53     150 .. 0.72

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 3e-10
  ABC_trans_N   2 Lartlsrqssssssssss................e...sssedeeeed....seFdlekwlknlreridrdgikprklGVvFknLtVeGvgsgadyqp 76 
                  L+r++++ s s ++s+ s                    +             ++Fd+ ++++++++ ++++gi+ rk GV+ ++ ++eG  s+a    
   CCD25961.2  54 LSRIFTQGSGSYQASQFSadvvsnveslaevlshHttrDGP------VptegNDFDAAAIFSKFVRDANEQGIHIRKSGVTLEDVSAEGLDSSALEGA 145
                  78888876444444444456776665554333220222333......2455445******************************************** PP

  ABC_trans_N  77 Tvgna 81 
                  T+gn+
   CCD25961.2 146 TFGNI 150
                  ***96 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.9         2   1.8e+03     216     255 ..     525     571 ..     517     573 .. 0.70
   2 !   25.6   6.5   6.8e-09   6.1e-06     220     341 ..     609     780 ..     535     782 .. 0.84
   3 !    8.9  13.7   0.00083      0.74     216     339 ..    1276    1465 ..    1206    1470 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2
  ABC2_membrane_3 216 vyllqlllilllafgl......gipfgnlgl.llllfllfglayial 255
                      ++++q++++  l++++      +++ g++++ +ll++ l+gla i++
       CCD25961.2 525 AAIIQSFIVGSLFYNTpsttngAFSRGGVLYfALLYYSLMGLANISF 571
                      56677777777777778777776666666652558999999988876 PP

  == domain 2  score: 25.6 bits;  conditional E-value: 6.8e-09
  ABC2_membrane_3 220 qlllilllafglgipfg..nlglllllfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPffapgl 311
                       +++il+++ g  ++ +   ++ + l++ l    ++ ++ ++ s++++ + a+++ ++++l +s+++++++ l++++ +++wi++++P+ + ++
       CCD25961.2 609 LFIIILYFLAG--LHTSagAFFMVYLFLTLTTEGISLMFEMIASACDTLAQANAINGVLMLAISLYSTYMIQLPSMHPWFQWISYVLPIRYGFE 700
                      33444445556..55554266666699999999*********************9999999999999999************************ PP

  ABC2_membrane_3 312 gllrl.itgdplwe..................................................illsliilalfavvyll 341
                      ++l+    g   ++                                                  ++++++i ++f + yl+
       CCD25961.2 701 SMLNAeFHGR-HMDcggtlvptgpgyenvaddnkvcafvgsepgqswvlgddylkkqfqyeykhTWRNFGIIWCFLLGYLC 780
                      ***9955555.4456777777888888999999999999999999999999999999999999999999999999998886 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.00083
  ABC2_membrane_3  216 vyllqlllilllafgl......gipfgnlglll.llfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwi 300 
                        +ll++ ++++   ++      +++ + +g+ +  + +++ l y+ +g+++ +++ n  +a++++++ +++l+ f+g++ p + +p+++   
       CCD25961.2 1276 YHLLFSTIFFV---SSyfplrnFFQASRSGVYFlNYCIMYQLYYVGFGLMVLYVSPNLPSANVILGLCLSFLISFCGVTQPPSLMPGFWTFM 1364
                       33333333333...222333546666677776647889999**********************98888888********************* PP

  ABC2_membrane_3  301 fsiiPffapglgllrli...............tgdplwe....................................................i 325 
                           P++++ + ++ ++               +     +                                                    +
       CCD25961.2 1365 WKASPLTYFVQNMIGIMlhdkkvvcskkelnyF-----NppagqtcgeymdpflsgatgyinnpdatsdcayclyevgdnylasisapysnL 1451
                       ****************97777777776553321.....256667888899999999999999999999999999999999999999999999 PP

  ABC2_membrane_3  326 llsliilalfavvy 339 
                       +++++i ++ +v+ 
       CCD25961.2 1452 WRNFGIFWIYIVFN 1465
                       99999999999875 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.059        53      98     131 ..     181     215 ..     159     220 .. 0.78
   2 !   19.7   0.0   6.8e-07   0.00061      99     122 ..     882     905 ..     855     935 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.059
                  TT.SEEEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  98 kd.ktsvlvGqSGvGKStLinallpelelktgevs 131
                  k  ++++++G  G+G S+++++ ++e ++  g ++
   CCD25961.2 181 KAgEMVLVLGRPGAGCSSFLKVTAGEIDQFAGGIK 215
                  33489999****************99999888776 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 6.8e-07
                  TSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  99 dktsvlvGqSGvGKStLinallpe 122
                  + +++l+G+SG+GK+tL+n+l+++
   CCD25961.2 882 GTMTALMGESGAGKTTLLNTLAQR 905
                  4899*****************985 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.7e-05     0.033       1     103 [.     884     972 ..     884    1003 .. 0.75
   2 !    6.7   0.0    0.0063       5.6     259     296 ..    1013    1049 ..     999    1055 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.7e-05
      AAA_21   1 lnvliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqv..eeklssvetllesg 97 
                 +++l G  g+GK++LL +l                +++++gi+  + l++++ ++++fe +i  +++q++ +      e  q+  +++  ++ ++ e+ 
  CCD25961.2 884 MTALMGESGAGKTTLLNTL----------------AQRNVGIITGDMLINGRPIDSSFERRIGYVQQQDIHIAELSVRESLQFsaRMRRDQRIPDSEKL 966
                 58999**************................689*************************777777777666666666666655555555555555 PP

      AAA_21  98 llldkr 103
                  ++ k 
  CCD25961.2 967 AYVEKI 972
                 555555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0063
      AAA_21  259 sllliDEpEngLHPkllrrllellkelsrngaQviltT 296 
                   ll++DEp +gL+ +    +++ll++l++  +Q il T
  CCD25961.2 1013 LLLFLDEPTSGLDSQSSWAIIQLLRRLAD-AGQSILCT 1049
                  69************999999999999988.55554443 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.13   1.2e+02      11      43 ..     171     202 ..     167     218 .. 0.79
   2 !   16.8   0.0   7.5e-06    0.0068      25      70 ..     883     936 ..     868    1064 .. 0.44

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.13
      AAA_16  11 qLlsalervrsgrpelvllsGesGvGKsslvre 43 
                 ++l+ ++ v +  +e+vl+ G +G G ss ++ 
  CCD25961.2 171 RILNNVN-VLAKAGEMVLVLGRPGAGCSSFLKV 202
                 5566665.6677789***********9998865 PP

  == domain 2  score: 16.8 bits;  conditional E-value: 7.5e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggif....lrgkcdql..esaipy....s 70 
                  ++ l GesG GK++l+++l+++    g+i+    ++g+  ++  e+ i y    +
  CCD25961.2 883 TMTALMGESGAGKTTLLNTLAQRNV--GIITgdmlINGRPIDSsfERRIGYvqqqD 936
                 7899*****************7322..22223333555555553333333333221 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.6e-05     0.014       6      29 ..     883     906 ..     880     926 .. 0.91

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.6e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleql 29 
                 ++++++GesG+GKTtll++l++++
  CCD25961.2 883 TMTALMGESGAGKTTLLNTLAQRN 906
                 7899****************9987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.35   3.1e+02      21      39 ..     181     200 ..     173     202 .. 0.82
   2 !   12.4   0.1   0.00011     0.098      23      40 ..     882     900 ..     872     904 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.35
      AAA_29  21 lkg.atlltGpsGsGKSTll 39 
                  +g ++l+ G+ G+G S++l
  CCD25961.2 181 KAGeMVLVLGRPGAGCSSFL 200
                 45669**********99986 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00011
      AAA_29  23 g.atlltGpsGsGKSTllD 40 
                 g +t l+G+sG+GK+Tll 
  CCD25961.2 882 GtMTALMGESGAGKTTLLN 900
                 5589*************96 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.28   2.5e+02       2      22 ..     186     206 ..     185     217 .. 0.84
   2 !   12.2   0.1   0.00016      0.14       3      24 ..     886     907 ..     884     923 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.28
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                 v+++Grp +G S++++   ge
  CCD25961.2 186 VLVLGRPGAGCSSFLKVTAGE 206
                 789***********9877665 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 0.00016
                 EEEESTTSSHHHHHHHHHTSTE CS
    MMR_HSR1   3 aivGrpNvGKStLinaltgeka 24 
                 a++G + +GK+tL+n+l ++++
  CCD25961.2 886 ALMGESGAGKTTLLNTLAQRNV 907
                 89***************99843 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.1   3.6e-05     0.032       2      37 ..     884     915 ..     883     934 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.6e-05
                 EEEEEESTTCCHHHHHHHHHCT--SS-EEEEESS-S CS
        cobW   2 vtvltGflGsGKTtLlnhllenraglklavivNefg 37 
                 +t l G  G+GKTtLln+l ++    ++ +i++++ 
  CCD25961.2 884 MTALMGESGAGKTTLLNTLAQR----NVGIITGDML 915
                 578999************9966....7888988875 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   9.4e-05     0.085       3      45 ..     887     933 ..     886     976 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.4e-05
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe.....a 45 
                 l+G +G+GKttl + L++r ++g++ +d++ ++++ ++ ++      +
  CCD25961.2 887 LMGESGAGKTTLLNTLAQR-NVGIITGDMLINGRPIDSSFERrigyvQ 933
                 7899**************9.6888888888888888888877333331 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0         1   9.2e+02     135     183 ..     221     348 ..      46     369 .. 0.65
   2 ?    0.9   0.0      0.28   2.5e+02      25      44 ..     883     902 ..     875     904 .. 0.88
   3 ?    7.8   0.0    0.0022       1.9     157     209 ..    1010    1062 ..    1005    1073 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1
                 T...................................................................................CS-HHHHHHHHHHHH CS
                 x...................................................................................xxxxxxxxxxxxxxx RF
       SMC_N 135 e...................................................................................lLSgGektLvalaLl 150
                 +                                                                                     SgGe++ v++a  
  CCD25961.2 221 DgipqkemmkhykadviyngeldvhfpfltvqqtldfaiacktpanrvngvskaeyiqstrelyatifglrhtyqtkvgndfvrGVSGGERKRVSIAEA 319
                 044444555555555555555555555555555555555555555555555555555555555555555555555555555555679999998888887 PP

                 HHHHCCS--SEEEECTTTTTS-HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 151 fAiqkvkpaplyllDeidaaLDeknvkkvaell 183
                 +A +     ++y+ D+    LD++   ++ e +
  CCD25961.2 320 LAAN----GSIYCWDNATRGLDASTALEYTEAI 348
                 7754....4677777777777777666555555 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.28
                 SEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxx RF
       SMC_N  25 sftaivGpNGSGKsnlldAi 44 
                  +ta++G+ G+GK+ ll+ +
  CCD25961.2 883 TMTALMGESGAGKTTLLNTL 902
                 589***********999865 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.0022
                  S--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  157 kpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklv 209 
                  kp  l +lDe  + LD +   ++ +ll++  +  Q i  ++++   +  +++ 
  CCD25961.2 1010 KPDLLLFLDEPTSGLDSQSSWAIIQLLRRLADAGQSILCTIHQPSATLFEQFD 1062
                  788899**********************************9987665555544 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.41   3.7e+02       1      48 [.     186     233 ..     186     238 .. 0.89
   2 ?    8.3   0.0    0.0032       2.9       3      43 ..     887     925 ..     885     951 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.41
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfwdgYt 48 
                   +++ G++g G S++ k  a ++ +  + +k d +y + p++++++ Y+
    CCD25961.2 186 VLVLGRPGAGCSSFLKVTAGEIDQFAGGIKGDITYDGIPQKEMMKHYK 233
                   5789*************9999999999999888888*********998 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0032
  RNA_helicase   3 lyGpsgeGKStlakeLakallkklklkkkdsvys.rnpeddf 43 
                   l G+sg GK+tl ++La++     + ++ d ++  r+ +++f
    CCD25961.2 887 LMGESGAGKTTLLNTLAQRNV---GIITGDMLINgRPIDSSF 925
                   78*************999876...344555555544444444 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00025      0.22       4      26 ..     884     907 ..     882     952 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00025
      AAA_24   4 kiliyGpsgiGKTtlakel.gpkp 26 
                 + +++G+sg+GKTtl+++l + ++
  CCD25961.2 884 MTALMGESGAGKTTLLNTLaQRNV 907
                 6789**************954444 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.28   2.5e+02      13      40 ..     178     205 ..     174     216 .. 0.78
   2 ?    8.7   0.0    0.0015       1.3       5      40 ..     867     904 ..     863     907 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.28
      AAA_30  13 lltsgdrvavltGpAGtGKttalkalre 40 
                 +l++   ++++ G++G+G +  lk+ + 
  CCD25961.2 178 VLAKAGEMVLVLGRPGAGCSSFLKVTAG 205
                 455555699*************998764 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0015
      AAA_30   5 eQaaaveallt..sgdrvavltGpAGtGKttalkalre 40 
                 +Q+ +++++ +   +  +++l G  G+GKtt+l++l++
  CCD25961.2 867 GQRMLLDHVSGycVPGTMTALMGESGAGKTTLLNTLAQ 904
                 56666665543113456999*************99875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       6.6   5.9e+03      29      49 ..     179     199 ..     168     202 .. 0.81
   2 ?   10.3   0.0   0.00044      0.39      26      54 ..     875     903 ..     869     920 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 6.6
      AAA_25  29 llpagelallaGapgtGKttl 49 
                 l  age +l+ G+pg+G + +
  CCD25961.2 179 LAKAGEMVLVLGRPGAGCSSF 199
                 567999**********97765 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00044
      AAA_25  26 vkgllpagelallaGapgtGKttlaldla 54 
                 v g+ + g+ ++l+G +g+GKttl+  la
  CCD25961.2 875 VSGYCVPGTMTALMGESGAGKTTLLNTLA 903
                 5677888*****************98777 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00038      0.34       3      25 ..     886     908 ..     884     959 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00038
      AAA_28   3 vitGgestGKTtlleaLaargyp 25 
                 +++G +++GKTtll+ La+r++ 
  CCD25961.2 886 ALMGESGAGKTTLLNTLAQRNVG 908
                 689999************99654 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       6.9   6.2e+03       2      18 ..     185     201 ..     184     205 .. 0.89
   2 ?   10.0   0.1   0.00066      0.59       3      22 ..     885     904 ..     883     906 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 6.9
                 CEEEEC-TTTCHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlq 18 
                 +v++ G++G G + +l+
  CCD25961.2 185 MVLVLGRPGAGCSSFLK 201
                 689********999996 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00066
                 EEEEC-TTTCHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklal 22 
                  +l Ge+G GKTtLl  la+
  CCD25961.2 885 TALMGESGAGKTTLLNTLAQ 904
                 5799*************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1500 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       778  (0.0433934); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.03u 0.31s 00:00:01.34 Elapsed: 00:00:00.48
# Mc/sec: 9416.69
//
Query:       CCD25962.2  [L=368]
Description: hypothetical protein NDAI_0G01870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-67  226.5   0.4    3.1e-67  225.5   0.1    1.6  2  GalP_UDP_tr_C    Galactose-1-phosphate uridyl transferase, C-
    3.9e-67  226.2   0.4    5.5e-67  225.8   0.4    1.2  1  GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-
     0.0038   16.1   0.3        1.5    7.5   0.0    2.1  2  DUF4921          Domain of unknown function (DUF4921)
  ------ inclusion threshold ------
      0.028   14.7   0.0       0.09   13.1   0.0    1.9  1  WG_beta_rep      WG containing repeat
       0.13   13.0   0.0       0.47   11.2   0.0    1.9  2  HIT              HIT domain
        9.1    6.2   6.4        0.9    9.4   1.6    1.8  2  DUF3721          Protein of unknown function


Domain annotation for each model (and alignments):
>> GalP_UDP_tr_C  Galactose-1-phosphate uridyl transferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.4   4.2e+03      35      50 ..      19      34 ..      10      35 .. 0.82
   2 !  225.5   0.1     1e-70   3.1e-67       1     166 [.     198     365 ..     198     366 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.4
                   E-SSEEEE--TT--ST CS
  GalP_UDP_tr_C 35 lkdsflavvpylakWP 50
                   l+ds++ v+p+ ak P
     CCD25962.2 19 LTDSWILVSPHRAKRP 34
                   7899*****9999877 PP

  == domain 2  score: 225.5 bits;  conditional E-value: 1e-70
                    HHHHHHHHHHHH.SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS---E CS
  GalP_UDP_tr_C   1 eldsfekYfagsngsillhdyvqmelaekervvelkdsflavvpylakWPfevlllrkaevkslaeladeekedlaailkklarkydnlfetsfey 96 
                    el+sf+kY++++  ++ll d+v++el+e++r+v ++d f+ vvpy+a+WPfe+++++k++++s+a++++ +k+dla+i+k l++kydn+fe+sf+y
     CCD25962.2 198 ELKSFKKYKHEN-HADLLGDFVKLELQERSRIVIENDTFMCVVPYWAVWPFETMIVSKTKIASVAQFTESQKSDLASIMKTLTIKYDNMFECSFPY 292
                    5789******99.9********************************************************************************** PP

                    EEEEE---SCCCTT...TT--EEEEE--BCSSTTEB----THHHHT-EEESS-HHHHHHHHH.CS-.SS-TTCH CS
  GalP_UDP_tr_C  97 smGlhqaplnaeed...nswlHaHfevpllrsatvrkieVGlelLperlrdllaEqaaerlrnals.evHkeaa 166
                    smGlhqaplna+ +   nsw+H+Hf++pllrsatvrk++VG+elL+e++rdl+aEqaa+rlr +l+ evH+ ++
     CCD25962.2 293 SMGLHQAPLNATGEeleNSWFHMHFYPPLLRSATVRKFLVGFELLGEPQRDLTAEQAAQRLR-NLDgEVHYLEK 365
                    ************99899*********************************************.8887***9875 PP

>> GalP_UDP_transf  Galactose-1-phosphate uridyl transferase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.8   0.4   1.8e-70   5.5e-67       2     184 .]       5     192 ..       4     192 .. 0.95

  Alignments for each domain:
  == domain 1  score: 225.8 bits;  conditional E-value: 1.8e-70
  GalP_UDP_transf   2 eieeddaiyashrrfnpltgewvlvsphrtkrpwqgqqekiskdtlpekDklkcyLcPgnsrangefnpkykstfvftndFpalsedsnyikte 95 
                      e++++d+   shrr+nplt++w+lvsphr+krpw gqqe++s++++pe+D  kc+LcPgn ra+g +npky+st+ f+nd++a++++++   ++
       CCD25962.2   5 EFDFTDH---SHRRYNPLTDSWILVSPHRAKRPWLGQQETPSRPNAPEYD-DKCFLCPGNHRATGGSNPKYESTYIFQNDYAAVKTEQPTLPEN 94 
                      78999**...****************************************.8************************************999887 PP

  GalP_UDP_transf  96 aiakn....ilfkaepayGrceviifsskheltladlspkdikavvaaWqektaelka.....keypkcvlifENkGaamgvsnphPHgqiwae 180
                       + k+    +lfk+e+++G+c vi+fs+kh++t+++++  ++ +vv aWq+ +++l++     ++ +k+v+ifENkG+amg+sn hPHgq+w+ 
       CCD25962.2  95 YNGKDvlknRLFKVESVRGNCFVICFSPKHNVTIPQMEHGELINVVGAWQKLYNDLAKearenEKPFKYVQIFENKGTAMGCSNLHPHGQAWCL 188
                      7755555559*********************************************99899998999***************************9 PP

  GalP_UDP_transf 181 ehlp 184
                      e +p
       CCD25962.2 189 EAIP 192
                      9987 PP

>> DUF4921  Domain of unknown function (DUF4921)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0005       1.5       4      58 ..      11      65 ..       8      98 .. 0.86
   2 !    6.9   0.0   0.00077       2.3     213     330 ..     153     276 ..     126     289 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0005
     DUF4921  4 GtikqvnPftGtevWtvpgrgnrPlsekaeetapleeedreeacafcedrkletp 58
                   ++ nP+t + +   p r++rP   ++e+++  ++ + +++c  c  ++  t 
  CCD25962.2 11 HSHRRYNPLTDSWILVSPHRAKRPWLGQQETPSRPNAPEYDDKCFLCPGNHRATG 65
                556789******************999999999999999*********9998875 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.00077
     DUF4921 213 dlykrnryvrYvavfqnWLkpaGasfdhlhkqlvaiDergvqaeaeiarlre.....nPnlynelavdyaakhnlviaendhavafagfGhryp.tlev 305
                 +  ++++  +Yv++f n     G s  h h q   ++ +  + ++e++  ++     + +l  +++     ++  ++ end  ++++ +   +p    +
  CCD25962.2 153 EARENEKPFKYVQIFENKGTAMGCSNLHPHGQAWCLEAIPSEVSQELKSFKKykhenHADLLGDFVKLELQERSRIVIENDTFMCVVPYWAVWPfETMI 251
                 3445667789**********************8888888877777777665411111345555555444567788888999998888888777732446 PP

     DUF4921 306 ysksatkePweqseeevravsdlvh 330
                  sk++ ++  + +e + ++++ ++ 
  CCD25962.2 252 VSKTKIASVAQFTESQKSDLASIMK 276
                 6777777777777777777766665 PP

>> WG_beta_rep  WG containing repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     3e-05      0.09      13      31 ..      68      86 ..      67      88 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3e-05
  WG_beta_rep 13 ppkYddagsFseGlaaVkk 31
                  pkY++ + F +++aaVk+
   CCD25962.2 68 NPKYESTYIFQNDYAAVKT 86
                 59****************7 PP

>> HIT  HIT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.4   7.1e+03      68      83 ..     161     176 ..     119     182 .. 0.48
   2 ?   11.2   0.0   0.00016      0.47       3      90 ..     223     317 ..     221     318 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.4
                 CCCEEEEEEESGGGT- CS
         HIT  68 nkglrvvinngahagq 83 
                  k ++++ n+g + g 
  CCD25962.2 161 FKYVQIFENKGTAMGC 176
                 2345555555555554 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00016
                 CC-CCEEEE-SSEEEEE-SS-SSSSEEEEEESSTGCSGGGCCHHHHHHHHHHHHHHHHHHHTCT..........TCCCEEEEEEESGGGT-SSSS-EE CS
         HIT   3 eipstvvyeddlvlafldidpkapghlLvipkkhlselhdlteeelakllsavkkvakalqkkf..........knkglrvvinngahagqsvahlHi 90 
                 ++ s++v+e+d ++ ++   + +p  + ++ k++++ + ++te+  ++l s++k +  +  + f          +      +  +g+++ +s +h+H+
  CCD25962.2 223 QERSRIVIENDTFMCVVPYWAVWPFETMIVSKTKIASVAQFTESQKSDLASIMKTLTIKYDNMFecsfpysmglH---QAPLNATGEELENSWFHMHF 317
                 67799***********************************************99999988888888888775431...45677778888888888885 PP

>> DUF3721  Protein of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.6    0.0003       0.9       8      26 ..     168     186 ..     168     187 .. 0.89
   2 ?   -3.4   0.2       3.1   9.2e+03       7      13 ..     346     352 ..     345     353 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0003
     DUF3721   8 earAkelGCkGaHkmgdkW 26 
                 e++ +++GC+  H++g+ W
  CCD25962.2 168 ENKGTAMGCSNLHPHGQAW 186
                 566789************* PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.1
     DUF3721   7 AearAke 13 
                 Ae++A+ 
  CCD25962.2 346 AEQAAQR 352
                 8999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2592.94
//
Query:       CCD25963.2  [L=287]
Description: hypothetical protein NDAI_0G01880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.5e-97  323.6   0.0    8.6e-97  323.4   0.0    1.0  1  ParA         NUBPL iron-transfer P-loop NTPase
    1.2e-09   38.3   0.0    8.9e-09   35.5   0.0    2.3  1  CbiA         CobQ/CobB/MinD/ParA nucleotide binding domain
    5.4e-08   33.0   0.3    6.4e-07   29.5   0.3    2.1  1  AAA_31       AAA domain
      2e-07   30.6   0.0      7e-07   28.8   0.0    1.8  1  MipZ         ATPase MipZ
    1.3e-05   24.5   0.1    6.9e-05   22.2   0.0    1.9  2  ArsA_ATPase  Anion-transporting ATPase
     0.0012   18.4   0.0       0.13   11.7   0.1    2.2  2  Fer4_NifH    4Fe-4S iron sulfur cluster binding proteins, Nif
     0.0037   16.3   0.1     0.0059   15.6   0.1    1.2  1  MeaB         Methylmalonyl Co-A mutase-associated GTPase MeaB
  ------ inclusion threshold ------
      0.028   13.9   0.0       0.12   11.9   0.0    1.8  1  CBP_BcsQ     Cellulose biosynthesis protein BcsQ
      0.036   14.0   0.0      0.056   13.3   0.0    1.3  1  APS_kinase   Adenylylsulphate kinase
      0.064   12.8   0.0        0.1   12.2   0.0    1.2  1  AAA_25       AAA domain


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.4   0.0  4.8e-100   8.6e-97       1     245 [.      22     278 ..      22     279 .. 0.95

  Alignments for each domain:
  == domain 1  score: 323.4 bits;  conditional E-value: 4.8e-100
        ParA   1 kvkkviavlSgKGGVGKStvavnlAlaLakkglkvgllDaDiyGpsiprllgveeekpeqsekkliPvea.....kgikvmSigfllesedeavvwrGp 94 
                 ++k++i++lSgKGGVGKS+v+++ Al+L ++g+kvg+lD+D++Gps+pr++g+e++++ q+ ++++Pv +      ++kv+S+gfll ++ ++vvwrGp
  CCD25963.2  22 QIKHIILILSGKGGVGKSSVTTQAALTLCNMGYKVGVLDIDLTGPSLPRMFGLENRSIYQDVDGWLPVPVetngiGELKVISLGFLLGDRGNSVVWRGP 120
                 59***********************************************************88999766555676779********************* PP

        ParA  95 mkskaikqllkdvewgelDyLiiDlPPGtgDeqltvaqkl...plagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteifg 190
                 +k+++ikq++kdv+wg+lDyL+iD+PPGt+De++++a++l   + +ga++Vttpq va+adv+k+++++kkv +++lGvveNmsgf+cp+c+e+t+if+
  CCD25963.2 121 KKTAMIKQFIKDVAWGQLDYLLIDTPPGTSDEHISIAEQLrfsEPDGAIVVTTPQGVATADVRKELNFCKKVALHILGVVENMSGFICPHCEECTNIFS 219
                 ****************************************887778***************************************************** PP

        ParA 191 kgggeklaeelgvpllgeipldpeireasdegkp....lvlkepeseaakaleeiaekv 245
                 +ggg+kla+e++vp+lg+ip+dp+++e++++++     lv++  es+   ++++i++kv
  CCD25963.2 220 SGGGAKLATEFDVPYLGNIPIDPKFVEMIENQNVseknLVESYGESTLCPIFKNIMDKV 278
                 *****************************998765555888888899999999999987 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0     5e-12   8.9e-09       1      55 [.      27     181 ..      27     254 .. 0.69

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 5e-12
                 EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH............................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................. RF
        CbiA   1 iaiastkGGvGKTtlaanLaralarrglrVllvDaDpqannlaileglendiep............................................. 54 
                 i+i s+kGGvGK+++++  a  l + g++V ++D D  +++l   +glen+                                                
  CCD25963.2  27 ILILSGKGGVGKSSVTTQAALTLCNMGYKVGVLDIDLTGPSLPRMFGLENRSIYqdvdgwlpvpvetngigelkvislgfllgdrgnsvvwrgpkktam 125
                 79*****************************************99999987655666777777777777777777777777777777777777777777 PP

                 .......................................................C CS
                 .......................................................x RF
        CbiA  55 .......................................................d 55 
                                                                        d
  CCD25963.2 126 ikqfikdvawgqldyllidtppgtsdehisiaeqlrfsepdgaivvttpqgvataD 181
                 77777777666666666666666666666666666666666555555555555553 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.3   3.6e-10   6.4e-07       2     167 ..      25     192 ..      24     201 .. 0.78

  Alignments for each domain:
  == domain 1  score: 29.5 bits;  conditional E-value: 3.6e-10
      AAA_31   2 kvIaianqKGGvGKTTtsvnlaaalaklgkkvLlvDlDpQa.nattglgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielve 99 
                 ++I i   KGGvGK+  +++ a +l ++g+kv + D+D  + ++   +g+e+++i +++   l         + ++ + +l++i     L +  +++v 
  CCD25963.2  25 HIILILSGKGGVGKSSVTTQAALTLCNMGYKVGVLDIDLTGpSLPRMFGLENRSIYQDVDGWLPVP------VETNGIGELKVISLGFLLGDRGNSVVW 117
                 589999********************************8872556778887777666666665222......222335678999999999999999998 PP

      AAA_31 100 lekkeeil.kellekvk.deYDyiiiDcpP.....sLglltenaLvasdsviipvqaeayaleGleqllktieev 167
                    k++++ k+++++v   + Dy +iD+pP     ++++  +  +   d  i+++ ++  a+  +++ l++ ++v
  CCD25963.2 118 RGPKKTAMiKQFIKDVAwGQLDYLLIDTPPgtsdeHISIAEQLRFSEPDGAIVVTTPQGVATADVRKELNFCKKV 192
                 888877655999*9997367**********444434566666677777889999999999988888888887776 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   3.9e-10     7e-07       1     108 [.      25     146 ..      25     163 .. 0.62

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 3.9e-10
                 EEEEE--SSTTSSHHHHHHHHHHHHHTTT--EEEEE--TTT-HHHHHH..HHHHHHHHHHT------EE.......E-SS.....S-HHHHTTS-HHHH CS
        MipZ   1 hvivlgnekGGsGksttavhvavaLlkkGarvaaidldlrqrtlaryl..enraataerkglsLplpea.......lals.....eaeeaeveeeeeae 85 
                 h+i +   kGG Gks ++   a +L ++G +v+++d+dl   +l r +  enr+  ++  g  Lp+p          ++s         ++v     ++
  CCD25963.2  25 HIILILSGKGGVGKSSVTTQAALTLCNMGYKVGVLDIDLTGPSLPRMFglENRSIYQDVDGW-LPVPVEtngigelKVISlgfllGDRGNSVVWRGPKK 122
                 78999999**************************************86448**998887663.333321000011011111111011222333333334 PP

                 HHHHHHHHHHHH.HH-SEEEEE-- CS
        MipZ  86 vaeleelvadle.aeldfividtP 108
                 +a +++ ++d++  +ld+++idtP
  CCD25963.2 123 TAMIKQFIKDVAwGQLDYLLIDTP 146
                 456666666665246677777775 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   3.8e-08   6.9e-05       3      38 ..      27      62 ..      25      84 .. 0.87
   2 ?   -0.4   0.0      0.29   5.1e+02     112     134 ..     125     147 ..     119     160 .. 0.85

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 3.8e-08
                 EEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE-S CS
  ArsA_ATPase  3 vilvgGKGGVGKttvsaatavklsekgkkvllistD 38
                 +++++GKGGVGK++v +  a+ l ++g+kv ++  D
   CCD25963.2 27 ILILSGKGGVGKSSVTTQAALTLCNMGYKVGVLDID 62
                 6789**************************999888 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.29
                  HHHHHHHHHHCSSSSEEEEESBS CS
  ArsA_ATPase 112 sfeellkyvkeeeydvvvlDtaP 134
                    ++++k v   + d++++Dt+P
   CCD25963.2 125 MIKQFIKDVAWGQLDYLLIDTPP 147
                  5678899999999********99 PP

>> Fer4_NifH  4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   7.3e-05      0.13       5      35 ..      30      60 ..      26      76 .. 0.87
   2 !    4.7   0.0    0.0096        17     195     248 ..     225     282 ..     187     286 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 7.3e-05
   Fer4_NifH  5 iyGkGGiGksttsqnlsaalaemgkkvlivG 35
                + GkGG+Gks  ++  + +l +mg kv ++ 
  CCD25963.2 30 LSGKGGVGKSSVTTQAALTLCNMGYKVGVLD 60
                67***********************997665 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0096
   Fer4_NifH 195 kfaeelgtkvlevvPrd....eivrkaelrkktvieyapeseqakeyrelarkilenk 248
                 k+a+e +++ l  +P d    e+++++++ +k ++e   es  +  ++++ +k+l ++
  CCD25963.2 225 KLATEFDVPYLGNIPIDpkfvEMIENQNVSEKNLVESYGESTLCPIFKNIMDKVLAQN 282
                 788999999999999874444689999***999999999999************9876 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   3.3e-06    0.0059      34      69 ..      30      65 ..      22      73 .. 0.88

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 3.3e-06
                EEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE---- CS
        MeaB 34 ltGvPGaGkstlvealglelrrrGkrvavlavDPss 69
                l G  G+Gks ++ + +l+l + G++v+vl +D + 
  CCD25963.2 30 LSGKGGVGKSSVTTQAALTLCNMGYKVGVLDIDLTG 65
                78999****************************665 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.6e-05      0.12       4     133 ..      28     155 ..      25     185 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.6e-05
    CBP_BcsQ   4 lalqGvRGGvGttsllaaLawalhelgesv..lviDlspd...nlLrlhFnvdieqregwaraeldgapwrqaaleyapgldllPfGelnveekenlqq 97 
                 l l+G +GGvG++s+++  a  l ++g++v  l iDl+      +  l     +++ +gw    ++++         + +l+++  G l  +  +++  
  CCD25963.2  28 LILSG-KGGVGKSSVTTQAALTLCNMGYKVgvLDIDLTGPslpRMFGLENRSIYQDVDGWLPVPVETN--------GIGELKVISLGFLLGDRGNSVVW 117
                 55666.8******************9999722445655440113445555555677888888877743........34567888888877776666555 PP

    CBP_BcsQ  98 .laekaeallaalkelk.eqyrwillDlpagasaltre 133
                    +k+  +++++k ++ +q +++l+D p g+s+ + +
  CCD25963.2 118 rGPKKTAMIKQFIKDVAwGQLDYLLIDTPPGTSDEHIS 155
                 24455667777888888888888888888877665544 PP

>> APS_kinase  Adenylylsulphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.1e-05     0.056       3      45 ..      26      68 ..      24      82 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.1e-05
                EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHTTTT CS
  APS_kinase  3 vvvwltGlsgsGKstianalekkLvekgisvylLdGdnvRhgL 45
                +++ l+G  g GKs+++++ + +L ++g++v +Ld d     L
  CCD25963.2 26 IILILSGKGGVGKSSVTTQAALTLCNMGYKVGVLDIDLTGPSL 68
                6889*******************************88665555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.7e-05       0.1      32      58 ..      24      50 ..      11      60 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 5.7e-05
      AAA_25 32 agelallaGapgtGKttlaldlalava 58
                ++ + +l G +g+GK+ ++++ al+++
  CCD25963.2 24 KHIILILSGKGGVGKSSVTTQAALTLC 50
                566789*****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       513  (0.0286129); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2147.66
//
Query:       CCD25964.2  [L=673]
Description: hypothetical protein NDAI_0G01890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-53  180.9   3.2    2.5e-53  180.9   3.2    4.5  2  Gti1_Pac2  Gti1/Pac2 family


Domain annotation for each model (and alignments):
>> Gti1_Pac2  Gti1/Pac2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.9   3.2   1.4e-57   2.5e-53       1     181 []       8     178 ..       8     178 .. 0.82
   2 ?  -33.4  42.6         1   1.8e+04      76      76 ..     564     564 ..     213     646 .. 0.66

  Alignments for each domain:
  == domain 1  score: 180.9 bits;  conditional E-value: 1.4e-57
                 SEES---SHHHHHHHHHHHHTTSS---SS---HHHHHHHSSTTEEEEEEHHHH--SS---S--B---EEETTEEEEEB--------------------- CS
   Gti1_Pac2   1 tfkgyiettkdalllieavlegilkrvtrRlkekErkeliksGsvFvfeeeesgikRWTDGvsWSpSrilgnfLvYreldkkrakkkkkkkkkkskest 99 
                 tf+gyi+++kda+ +i+a+l+g+lk ++rR++e Er++li+sG++Fvf+ee sgikRWTDGv WSpSri g+fL+Yrel+k++ k+k+k+k ++s +++
  CCD25964.2   8 TFRGYISDEKDAMKIIQATLDGKLKYIPRRPYEIERPQLITSGNIFVFIEEISGIKRWTDGVPWSPSRIAGKFLIYRELNKDKDKEKDKDKVNESDKDK 106
                 8******************************************************************************99999988888665554433 PP

                 ----------.................----------------------------------EEEEEEEEEETTT......EEEEEEE- CS
   Gti1_Pac2 100 kkeesksekasssssesseakessssseskasksskslekdserslvgsltdsykfkkdgLvKkTisvtlkgke......lhlisYyk 181
                 +k ++k     ++++++     ++ +    +  ++++l+k+s+++ +++l d+  fk++gL+KkTisv+lk+        +hlisYy+
  CCD25964.2 107 EKGNEK-----DNDTDK-----EKGK----EIYRERKLSKSSSKDSTEQLKDE--FKTTGLLKKTISVKLKRLLfdsvenVHLISYYT 178
                 322221.....122222.....1111....22344556667777777788877..9***************998999999*******6 PP

  == domain 2  score: -33.4 bits;  conditional E-value: 1
                 E CS
   Gti1_Pac2  76 Y 76 
                 Y
  CCD25964.2 564 Y 564
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2264  (0.126276); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        26  (0.00145016); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.91u 0.32s 00:00:01.23 Elapsed: 00:00:00.47
# Mc/sec: 4316.73
//
Query:       CCD25965.2  [L=986]
Description: hypothetical protein NDAI_0G01900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      4e-38  130.8   0.0    1.3e-37  129.2   0.0    2.0  1  AAA           ATPase family associated with various cellular 
    3.5e-09   36.3   0.1    7.3e-09   35.3   0.1    1.6  1  AAA_lid_3     AAA+ lid domain
    1.3e-08   34.7   2.1    2.8e-06   27.2   0.0    3.7  3  Vps4_C        Vps4 C terminal oligomerisation domain
    0.00019   21.7   1.6     0.0016   18.7   0.1    2.9  2  AAA_22        AAA domain
    0.00024   21.2   0.8    0.00083   19.5   0.0    2.3  2  AAA_2         AAA domain (Cdc48 subfamily)
    0.00029   20.6   0.0    0.00058   19.6   0.0    1.4  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
     0.0025   18.4   0.1      0.024   15.2   0.0    2.9  2  AAA_18        AAA domain
     0.0025   17.8   0.1      0.017   15.1   0.1    2.5  1  AAA_5         AAA domain (dynein-related subfamily)
     0.0049   16.3   0.7      0.017   14.5   0.1    2.2  2  Mg_chelatase  Magnesium chelatase, subunit ChlI
      0.005   16.1   0.0      0.005   16.1   0.0    1.7  1  TIP49         TIP49 P-loop domain
     0.0059   17.0   0.0      0.032   14.6   0.0    2.1  2  AAA_16        AAA ATPase domain
     0.0083   15.9   0.0      0.022   14.5   0.0    1.7  1  IstB_IS21     IstB-like ATP binding protein
  ------ inclusion threshold ------
      0.011   15.3   0.0       0.31   10.6   0.0    2.4  2  AAA_25        AAA domain
      0.012   15.7   0.0       0.16   12.0   0.0    2.9  2  AAA_14        AAA domain
       0.03   14.5   0.9       0.12   12.6   0.0    2.4  2  AAA_33        AAA domain
      0.091   12.7   0.0       0.22   11.4   0.0    1.7  1  Chromo        Chromo (CHRromatin Organisation MOdifier) domai


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.0   1.1e-40   1.3e-37       1     132 []     725     879 ..     725     879 .. 0.98

  Alignments for each domain:
  == domain 1  score: 129.2 bits;  conditional E-value: 1.1e-40
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH.TTCCCHHHHHHHHHHHHHHHHTTT CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr.sgseseeeervvnqLlteldgvkk 98 
                 +ll+GppGtGKT+la+ava e++++f++is+s+l+sky+gesek +r+lf  ak+ + psi+f+DEid++++sr +++e+e+++r+ n++l +++ +++
  CCD25965.2 725 MLLFGPPGTGKTMLARAVACESHSTFFSISASSLTSKYLGESEKLVRALFVIAKKLS-PSIVFVDEIDSIMGSRnNENENESSRRIKNEFLVQWSSLSS 822
                 89******************************************************9.****************9899********************* PP

                 S........................SSTEEEEEEESSGGGSTHHHHSTTSSEEEETTS CS
         AAA  99 k........................eskvivigatnrpdkldpallrgRfdrkieiel 132
                                          +++v+v++atn p+ +d+a + +Rf r+++i+l
  CCD25965.2 823 AaiskdtgkndiitsspgreehkeeDNRVLVLAATNLPWCIDEAAR-RRFVRRQYIPL 879
                 *************************999******************.7******9985 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   6.6e-12   7.3e-09       3      43 ..     904     955 ..     902     957 .. 0.79

  Alignments for each domain:
  == domain 1  score: 35.3 bits;  conditional E-value: 6.6e-12
   AAA_lid_3   3 dlkeLAerTeGySGADlaalcreAallAlrr...........gikeitmedf 43 
                 d++eL ++TeG+SG D+ al + Aa+  lr+           +i +i+  df
  CCD25965.2 904 DFNELIKLTEGFSGSDITALAKDAAMGPLRElgdklldtardNIRSIDLNDF 955
                 89***************************99655555554445556666666 PP

>> Vps4_C  Vps4 C terminal oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       3.6   4.1e+03      26      41 ..     268     283 ..     254     288 .. 0.71
   2 ?    4.7   0.0     0.027        31      31      60 ..     886     915 ..     878     915 .. 0.87
   3 !   27.2   0.0   2.5e-09   2.8e-06      28      61 .]     949     982 ..     945     982 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.6
      Vps4_C  26 ePpvtlkDflkalkka 41 
                 + ++ +kDf++++ ++
  CCD25965.2 268 KTDIIFKDFDDVVDTT 283
                 4578899**9999876 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.027
      Vps4_C  31 lkDflkalkkarptVskeDLekheeFTkef 60 
                 +  f++ l++++ t +++D +++++ T+ f
  CCD25965.2 886 IVQFKRLLAHQKNTLTEDDFNELIKLTEGF 915
                 568*****************9999988765 PP

  == domain 3  score: 27.2 bits;  conditional E-value: 2.5e-09
      Vps4_C  28 pvtlkDflkalkkarptVskeDLekheeFTkefG 61 
                 +++l+Df+++l+  +p+Vske L ++ee+ ++fG
  CCD25965.2 949 SIDLNDFKNSLAYIKPSVSKESLIEYEEWAAKFG 982
                 689******************************9 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       6.8   7.6e+03      25      35 ..     550     560 ..     488     602 .. 0.65
   2 !   18.7   0.1   1.4e-06    0.0016       8      74 ..     725     805 ..     723     822 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.8
      AAA_22  25 lleqldeeaka 35 
                 ++ q ++++++
  CCD25965.2 550 YTTQQQQQQQQ 560
                 22222222222 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 1.4e-06
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaee.............erpevvfvtlpsstsskdllrellralglelka.erls 74 
                 ++++G++GtGKT+l+r ++ + +   +                + ++ +fv +++++ s  +  e+ +++g+++++ e+ s
  CCD25965.2 725 MLLFGPPGTGKTMLARAVACESHSTFFSISassltskylgeseKLVRALFVIAKKLSPSIVFVDEIDSIMGSRNNEnENES 805
                 689******************976666666777777777744444444477777777777777777777777777733333 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.1         5   5.6e+03     141     153 ..     546     562 ..     522     585 .. 0.47
   2 !   19.5   0.0   7.4e-07   0.00083       4      97 ..     723     811 ..     720     816 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5
                 S....TTTTSGGG--HH CS
       AAA_2 141 k....eeeeekkkeeve 153
                 +    ++++++++++ +
  CCD25965.2 546 SsakyTTQQQQQQQQQQ 562
                 13333111111112111 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 7.4e-07
                 --EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTSEEEEETGGG----.---------HHHHH CS
       AAA_2   4 isilllgptgvGktelakalaellfvkkekkliradaselle..eeevehlvsrligappgyvgaeegGivllDEidKihpk.essgadvSregVqr 97 
                   +ll gp g+Gkt+la+a+a   +    +++  + as+l+     e+e+lv  l + ++    +    iv++DEid i  + ++++++ S+  + +
  CCD25965.2 723 RGMLLFGPPGTGKTMLARAVACESH----STFFSISASSLTSkyLGESEKLVRALFVIAK----KLSPSIVFVDEIDSIMGSrNNENENESSRRIKN 811
                 567899***************9999....59**********9333344555554444433....33456**********998766666666655655 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.2e-07   0.00058      31      96 ..     720     793 ..     706     801 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 5.2e-07
      RuvB_N  31 ealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlek.....agdlaalltnleek...dvlfideihrl 96 
                 e++  +ll+GpPG Gkt la+ +a e ++++ + s+  l       +  l+  l  + +k    ++f+dei  +
  CCD25965.2 720 EPIRGMLLFGPPGTGKTMLARAVACESHSTFFSISASSLTSkylgeSEKLVRALFVIAKKlspSIVFVDEIDSI 793
                 566779********************999988777766643111114566655554444323379999999765 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2       4.6   5.2e+03      49      69 ..     277     297 ..     237     346 .. 0.68
   2 !   15.2   0.0   2.1e-05     0.024       2     101 ..     726     856 ..     725     877 .. 0.71

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.6
      AAA_18  49 skrldedkldklldaleenss 69 
                  +++d+ ++  + +++++n++
  CCD25965.2 277 DDVVDTTVCTDNDNNNNNNNN 297
                 344444444444444444444 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.1e-05
      AAA_18   2 lltGtpGvGKttlakeL....skrlgf..................................gvnlrdvakenglllevdpealdeskrldedkldklld 62 
                 ll G+pG+GKt la+++         +                                  +++  d +   + +  +++ + ++s+r++ ++l ++++
  CCD25965.2 726 LLFGPPGTGKTMLARAVacesH----StffsisassltskylgeseklvralfviakklspSIVFVDEIDSIMGSRNNEN-ENESSRRIKNEFLVQWSS 819
                 689**************55430....234666666667777888888855666666665555555555544444444444.589999999999999999 PP

      AAA_18  63 aleenssaleegknlvidghlaeleseaakdikkvvLta 101
                 +  +++s  + gkn +i + ++  e  +   ++  vL a
  CCD25965.2 820 LSSAAIS-KDTGKNDIITSSPGREEHKEEDNRV-LVLAA 856
                 9999888.7888888999988887777666666.66655 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.5e-05     0.017       2      34 ..     725     757 ..     724     871 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.5e-05
                 EEEE--SSSSHHHHHHHGGGGBS--EEEEE--T CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyvqltr 34 
                 +lL GppGtgK++la+ +a    ++++ +  ++
  CCD25965.2 725 MLLFGPPGTGKTMLARAVACESHSTFFSISASS 757
                 79**************99866666665554444 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.9   3.3e+03      44      70 ..     645     671 ..     643     677 .. 0.79
   2 !   14.5   0.1   1.5e-05     0.017      25      42 ..     725     742 ..     722     746 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 2.9
  Mg_chelatase  44 sllpplseeealevakiasvagkkeee 70 
                   ++ pp +e+++le + i+s++g ++++
    CCD25965.2 645 TIEPPPEETKILEEKFINSLTGVDKQA 671
                   6789999*************9955443 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 1.5e-05
  Mg_chelatase  25 lllvGppGsGKtmlakrl 42 
                   +ll+GppG+GKtmla+++
    CCD25965.2 725 MLLFGPPGTGKTMLARAV 742
                   89*************986 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.5e-06     0.005      51     103 ..     723     773 ..     712     810 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.5e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevltqal 103
                 r++Ll Gp+gtGkt la a++ e   +  f ++s+s + s  +  +e l++al
  CCD25965.2 723 RGMLLFGPPGTGKTMLARAVACES--HSTFFSISASSLTSKYLGESEKLVRAL 773
                 899*****************9884..568999*********999999998876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.9e-05     0.032      24      59 ..     721     754 ..     713     806 .. 0.75
   2 ?   -2.2   0.0       4.3   4.9e+03     123     145 ..     769     791 ..     766     825 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.9e-05
      AAA_16  24 p.elvllsGesGvGKsslvrellralekdggiflrgk 59 
                 p + +ll G++G+GK+ l+r+++   ++++  f++  
  CCD25965.2 721 PiRGMLLFGPPGTGKTMLARAVA---CESHSTFFSIS 754
                 45899****************99...44444454444 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 4.3
      AAA_16 123 lkrll.allsrderplvlvlDdlq 145
                 l r+l + +++  +p ++++D+++
  CCD25965.2 769 LVRALfVIAKK-LSPSIVFVDEID 791
                 55566477777.777999***998 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     2e-05     0.022      49      77 ..     724     752 ..     720     802 .. 0.67

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 2e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveavragls 77 
                 +++l+Gp+G+GK+ la a++ e   + +s
  CCD25965.2 724 GMLLFGPPGTGKTMLARAVACESHSTFFS 752
                 579***************98765444333 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00028      0.31      27      55 ..     716     744 ..     710     750 .. 0.79
   2 ?    1.8   0.0      0.13   1.5e+02     132     167 ..     772     808 ..     756     822 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00028
      AAA_25  27 kgllpagelallaGapgtGKttlaldlal 55 
                 +gl+      ll+G+pgtGKt+la  +a+
  CCD25965.2 716 RGLREPIRGMLLFGPPGTGKTMLARAVAC 744
                 55555555679************988876 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.13
      AAA_25 132 aleaaieevegvrlvviDplsralgg..densnsdvga 167
                 al   +++   +  v +D +++++g   +en+n+  ++
  CCD25965.2 772 ALFVIAKK-LSPSIVFVDEIDSIMGSrnNENENESSRR 808
                 45555556.45999************766666655444 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.4   1.6e+03      26      47 ..      31      54 ..      25      78 .. 0.73
   2 ?   12.0   0.0   0.00014      0.16       6      77 ..     726     794 ..     723     844 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.4
      AAA_14 26 ll..vkkesilyinldderdkkla 47
                l+  v +esi y++l+d +  k++
  CCD25965.2 31 LYsrVANESIYYLKLEDRNCLKKS 54
                3456789**********8876655 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00014
      AAA_14   6 vitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelileklkeekktylflDEiqevp 77 
                 ++ G+  +GKT+l++ ++ e+    + ++ i+  + + k l ++ekl ++++  +k+   +++f DEi  + 
  CCD25965.2 726 LLFGPPGTGKTMLARAVACESH---STFFSISASSLTSKYLGESEKLVRALFVIAKKLSPSIVFVDEIDSIM 794
                 788999************9999...999999999999988888888888877776666789*******9874 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.0       3.4   3.8e+03      39      81 ..     551     593 ..     532     606 .. 0.55
   2 ?   12.6   0.0    0.0001      0.12       3      33 ..     726     776 ..     725     875 .. 0.62

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.4
      AAA_33  39 gtdqq.sktdytrvldrlyqilnelarkalsagrnvildatnls 81 
                  t+qq +++++++ ++++ + + e ++ + + +  + + +t+++
  CCD25965.2 551 TTQQQqQQQQQQQSKTKALKLQ-ENINGKTKMKLKTNVPSTLTN 593
                 3333303333333444444443.555555666666666666555 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 0.0001
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssdt..................l 33 
                 ll G+pG+GK+ la+ ++ + +  ++ +s  +                  +
  CCD25965.2 726 LLFGPPGTGKTMLARAVACESHstFFSISASSltskylgeseklvralfvI 776
                 689*************97666656666776664444455555544444440 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0002      0.22       2      29 ..     789     822 ..     788     829 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0002
                 EEEEEEEEEEETTEEC......EEEEEEETTSTG CS
      Chromo   2 eVerIidhrtdkdgle......leYlVKWkglpy 29 
                 e++ I+++r +++++e       e+lV+W++l+ 
  CCD25965.2 789 EIDSIMGSRNNENENEssrrikNEFLVQWSSLSS 822
                 7899***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (986 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3304  (0.184282); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                       119  (0.00663729); expected 17.9 (0.001)
Passed Fwd filter:                        37  (0.0020637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.32u 0.33s 00:00:01.65 Elapsed: 00:00:00.53
# Mc/sec: 5599.57
//
Query:       CCD25966.2  [L=138]
Description: hypothetical protein NDAI_0G01910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      226  (0.0126053); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1021.28
//
Query:       CCD25967.2  [L=348]
Description: hypothetical protein NDAI_0G01920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-07   31.6  11.9    2.8e-07   30.5  11.9    1.5  1  bZIP_1           bZIP transcription factor
    2.2e-05   24.5  12.1    4.8e-05   23.3  12.1    1.6  1  bZIP_2           Basic region leucine zipper
  ------ inclusion threshold ------
      0.046   14.2   5.5      0.095   13.2   5.5    1.5  1  bZIP_Maf         bZIP Maf transcription factor
       0.07   11.7   0.1      0.098   11.3   0.1    1.1  1  Herpes_LAMP2     Herpesvirus Latent membrane protein 2
      0.082   12.9   0.2       0.33   10.9   0.2    2.0  1  Intein_splicing  Intein splicing domain
       0.22   11.9   0.2       0.22   11.9   0.2    2.2  3  Csm1_N           Csm1 N-terminal domain


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5  11.9   9.2e-11   2.8e-07       2      61 ..     226     285 ..     225     287 .. 0.96

  Alignments for each domain:
  == domain 1  score: 30.5 bits;  conditional E-value: 9.2e-11
                 XXXXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelKrekrkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkkevekLks 61 
                 ke+ re+ +++NR aA+++R+RK+ + e+ ++   +  +eN+ Lk+++e ++k +++Lk+
  CCD25967.2 226 KEAERERLLERNRLAASKCRKRKRLQEEKFQEDYRKALQENSFLKKKIELYEKWIKNLKT 285
                 6888********************************9*********************96 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3  12.1   1.6e-08   4.8e-05       3      54 .]     227     279 ..     225     279 .. 0.92

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 1.6e-08
                 XXXXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   3 deyrerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqLrqkveqLeke 54 
                 +++rer   +Nr Aa ++R++k++ ee+ +e   +  +eN++L++k+e +ek+
  CCD25967.2 227 EAERERLLeRNRLAASKCRKRKRLQEEKFQEDYRKALQENSFLKKKIELYEKW 279
                 566777779****************************************9986 PP

>> bZIP_Maf  bZIP Maf transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.5   3.2e-05     0.095      32      78 ..     231     277 ..     212     290 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 3.2e-05
    bZIP_Maf  32 rRRrlKNrgyakscrkrrlqqkeelekekeeleeelerlqqelsrlr 78 
                  R   +Nr++a +crkr+  q+e+ ++ ++++ +e++ l++++++ +
  CCD25967.2 231 ERLLERNRLAASKCRKRKRLQEEKFQEDYRKALQENSFLKKKIELYE 277
                 466679******************************99999988765 PP

>> Herpes_LAMP2  Herpesvirus Latent membrane protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   3.3e-05     0.098     349     414 ..     148     214 ..     140     239 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 3.3e-05
  Herpes_LAMP2 349 fylykekklvavnsvtrrlriytrddtlhandgricpdvnhlarrl.pplpsrfvihvrllssvtdm 414
                    yly+++ ++++ s++++ +i t  +   ++    +  vn +     pp+p + + +     +v  m
    CCD25967.2 148 SYLYRNRTIISFQSFKTKEKIITCTNGQITHLTEDINTVNDVYDSQpPPFPGKAKGKKGYNIHVMTM 214
                   6********************9998877777766677777776655588998877666666665555 PP

>> Intein_splicing  Intein splicing domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00011      0.33      51      94 ..     132     192 ..     121     317 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
                      EEEETTS-EEEEETT-EEEECCTTEEEEEECCC--TT-EEEEE....................H CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....................x RF
  Intein_splicing  51 eiklesgrkikaTpeHkllvvrdegivEkradeLkegdliavp....................d 94 
                      +i+++s  ki +T+ H++l   +  i   + +  k ++ i++                      
       CCD25967.2 132 TIQVNSSDKISITSPHSYLYR-NRTI--ISFQSFKTKEKIITCtngqithltedintvndvydS 192
                      899****************99.6777..7999******99987555555555544444444440 PP

>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.1   6.2e+03      36      62 ..     162     188 ..     158     193 .. 0.70
   2 ?   -2.8   0.8       2.7   8.2e+03      56      65 ..     240     249 ..     214     257 .. 0.49
   3 ?   11.9   0.2   7.5e-05      0.22      24      63 ..     261     300 ..     259     305 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.1
      Csm1_N  36 letkdqeiesLkeqlaeleekvkelee 62 
                  +tk++ i     q+ +l e+++  ++
  CCD25967.2 162 FKTKEKIITCTNGQITHLTEDINTVND 188
                 567777777777888888888776655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 2.7
      Csm1_N  56 kvkeleerrk 65 
                   +++ +r++
  CCD25967.2 240 AASKCRKRKR 249
                 2233333333 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 7.5e-05
      Csm1_N  24 klvhENsvLsqkletkdqeiesLkeqlaeleekvkeleer 63 
                 k ++ENs L++k+e +++ i++Lk   ++ +  +++l+e 
  CCD25967.2 261 KALQENSFLKKKIELYEKWIKNLKTGDQNGKGICSSLNET 300
                 889*********************8766666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1057  (0.0589548); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2535.75
//
Query:       CCD25968.2  [L=381]
Description: hypothetical protein NDAI_0G01930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2899.52
//
Query:       CCD25969.2  [L=145]
Description: hypothetical protein NDAI_0G01940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-44  149.5   3.2    5.1e-44  149.2   3.2    1.1  1  Erg28     Erg28 like protein


Domain annotation for each model (and alignments):
>> Erg28  Erg28 like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.2   3.2   2.8e-48   5.1e-44       1     110 []      18     127 ..      18     127 .. 0.99

  Alignments for each domain:
  == domain 1  score: 149.2 bits;  conditional E-value: 2.8e-48
       Erg28   1 glLpkwllfvsvvslgnslqnyv.tlkltrrvYsgkpkeqvtplsaRtfgtwtllsaivrlyaaynienkalyqlalltyvialvhflsEllvfktakl 98 
                 g+Lpkwllf+s+vs++ns+q+y+  l+ltr+vY+gkp +++t lsaRtfgtwt++s+++rly+a++++++++yqla+++y++alvhf sEll+f+t+++
  CCD25969.2  18 GYLPKWLLFISIVSIFNSIQTYFsGLELTRKVYAGKP-KETTFLSARTFGTWTFISCVIRLYGAFYLNEPHIYQLAFISYIVALVHFGSELLIFRTCSF 115
                 79*********************9*************.************************************************************* PP

       Erg28  99 gkgllfplivat 110
                 ++g+++pliv+t
  CCD25969.2 116 NSGFMGPLIVST 127
                 **********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      258  (0.0143901); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1112.51
//
Query:       CCD25970.2  [L=844]
Description: hypothetical protein NDAI_0G01950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.7e-68  228.8   0.6    1.4e-67  227.9   0.6    1.4  1  SNF2_N      SNF2 family N-terminal domain
    8.8e-22   77.6   0.0    3.2e-20   72.5   0.0    2.7  2  Helicase_C  Helicase conserved C-terminal domain
      4e-09   36.7   0.1    2.3e-08   34.2   0.0    2.3  2  ResIII      Type III restriction enzyme, res subunit
    1.3e-05   25.1   0.0    3.2e-05   23.8   0.0    1.8  1  DEAD        DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.9   0.6   3.1e-71   1.4e-67      49     333 ..     231     524 ..     181     573 .. 0.89

  Alignments for each domain:
  == domain 1  score: 227.9 bits;  conditional E-value: 3.1e-71
                 HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  49 aeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkll 147
                 ++++++  +GiLaD+mGLGKT+q++al++    ++e+d+e        gp+Li +P s++d+W+ne+++++++  +  ++++g+++ + k  + + k  
  CCD25970.2 231 ITLYENGLNGILADDMGLGKTIQSIALLA---FIYEMDTE--------GPFLIAAPLSTIDNWMNEFQKFAPDLPVLKYYHHGGQNDRTKLLRKFFKKT 318
                 6788999**********************...88888884........8**************************999999998877777777788888 PP

                 ----EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 148 adydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllq 246
                 + +++++t+Y+++ r++      + +++++wk++++DEgh+lkn ++k+ + ++k++tsn+++ltGTP+qn+l++l++Ll+f+++++f +++ f+k+++
  CCD25970.2 319 NGTGIIVTSYEIIIRDS------DFIMSKNWKFLIVDEGHRLKNINCKLIKELKKINTSNKLLLTGTPLQNNLSELWSLLNFIMPNIFADFEIFSKWFD 411
                 899**************......9**************************************************************************9 PP

                 HHHH...............HHHHHHHHHHHTT-STTEE---GGGT.--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-H CS
                 xxxx...............xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 247 rpie...............aqaekgrsrLlqllqrlmlrrakkdv.eknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksssks 329
                  +                 + +++ +s+L+++l++++lrr kk v    lPpk e+++ ++l++ ++k+Y+r l+ + kk++ k  ++  +++++++  
  CCD25970.2 412 FEGLnlqsnsmklnkmindELQKNLISNLHTILKPFLLRRLKKTVlADILPPKREYVVNCPLTSIQKKFYTRGLTGKLKKTIFKEYVKTFFTMNAEYIG 510
                 8888999**************************************5566********************************************999977 PP

                 H.H-.........H CS
                 x.xx.........x RF
      SNF2_N 330 k.ek.........i 333
                 k ++          
  CCD25970.2 511 KvSNksirefidcK 524
                 76545666654440 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.06   2.7e+02      40      72 ..     292     326 ..     257     372 .. 0.75
   2 !   72.5   0.0   7.2e-24   3.2e-20       2     111 .]     598     713 ..     597     713 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.06
                 TSTEEEESTTSTHHHHHHHHHHHHTTS.SS.EEEE CS
  Helicase_C  40 gikvavlhgelpqnereeileqfnkge.sd.vLia 72 
                 ++ v++++    qn+r + l++f k++  + ++++
  CCD25970.2 292 DLPVLKYYHHGGQNDRTKLLRKFFKKTnGTgIIVT 326
                 566666777779**********9643313324443 PP

  == domain 2  score: 72.5 bits;  conditional E-value: 7.2e-24
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH....TTSSS.EEEESGGGTSSSTSTTESEEEESSSS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn....kgesd.vLiatdvaerGidipkvnlVinfdlp 94 
                 kl++l +l+  l + g+k+lif++++++l+ ++  +e +++++++++g+  +++r++ +eqfn    k++ + +L++t++a+ Gi+++ +++V+ fd +
  CCD25970.2 598 KLQTLQKLIiPLIKAGHKTLIFSQFTNMLDLLEDWCELNSLRALRIDGSVDTESRKDLIEQFNkksgKKQAQvFLLSTRAAGLGINLTAADTVVLFDSD 696
                 67788888668889***************77555578889***********************7766455666************************** PP

                 SSHHHHHHHHTTSSSTT CS
  Helicase_C  95 rnvtsyiqriGRtgRag 111
                 +n++   q+++R++R+g
  CCD25970.2 697 WNPQVDLQAMDRCHRIG 713
                 ***************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   5.2e-12   2.3e-08       4     169 ..     219     380 ..     216     382 .. 0.79
   2 ?   -1.7   0.0      0.56   2.5e+03     134     147 ..     702     715 ..     596     739 .. 0.52

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 5.2e-12
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--...... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka...... 96 
                 l++yQ e ++ l+  +  ++  +g+++   G GKT+ +++l + +++   e  fl+ +p  s ++ +++ef+kf+++    + k ++  +++       
  CCD25970.2 219 LKPYQLEGLNWLITLY--ENGLNGILADDMGLGKTIQSIALLAFIYEMDTEGPFLIAAPL-STIDNWMNEFQKFAPDLP--VLKYYHHGGQNDrtkllr 312
                 7899999999998776..5888999*************9999999998777777766665.55678*********9864..333322222222235555 PP

                 ........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.TTTHHH..HHT---SEEEEEESS- CS
      ResIII  97 .kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakkswrei..lekfkeavllglTATp 169
                  + k+++ + i+vt+++ + +ds       +   +++ +++i+DE Hrl+   + + i  l+k++ + +l lT+Tp
  CCD25970.2 313 kFFKKTNGTGIIVTSYEIIIRDS-------DFIMSKNWKFLIVDEGHRLKN-INCKLIkeLKKINTSNKLLLTGTP 380
                 667899999**************.......677888899************.88888877899999999******9 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.56
                 SEEEEETGGGTTS. CS
      ResIII 134 dviiiDEaHrlgak 147
                 d+  +D +Hr+g++
  CCD25970.2 702 DLQAMDRCHRIGQE 715
                 25556777777665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   7.2e-09   3.2e-05      13     136 ..     236     357 ..     220     388 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 7.2e-09
                 TTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET...TSSHHHHHHHH...HTTCSEEEEEH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxx...xxxxxxxxxxx RF
        DEAD  13 gggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig...gvaardqlskl...dngvdivvgtp 105
                 +g + ++a + G GKT   +i++l+ +ye   +t+   li +P+   + + +n+++kf     l vl  ++   ++++++ l+k+    ng+ i+v+  
  CCD25970.2 236 NGLNGILADDMGLGKTIQ-SIALLAFIYE--MDTEGPFLIAAPLST-IDNWMNEFQKFAPD--LPVLKYYHhggQNDRTKLLRKFfkkTNGTGIIVTSY 328
                 55678899999*****87.9999999998..888889******987.68899********6..5555444411144444444444654477******** PP

                 HHHHHHHHCTSSHCTTEEEEEEETHHHHHHT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 106 grlddllstgklnlsqvrflVlDEadrlldq 136
                 + +++  ++  +  ++ +fl++DE +rl + 
  CCD25970.2 329 EIIIR--DSDFIMSKNWKFLIVDEGHRLKNI 357
                 99998..555677999************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1331  (0.0742373); expected 358.6 (0.02)
Passed bias filter:                      535  (0.0298399); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.72u 0.29s 00:00:01.01 Elapsed: 00:00:00.45
# Mc/sec: 5669.87
//
Query:       CCD25971.2  [L=561]
Description: hypothetical protein NDAI_0G01960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.5e-28   96.5   0.3    8.5e-28   96.5   0.3    2.9  4  SWIRM            SWIRM domain
      1e-11   44.4   3.5    1.6e-11   43.8   3.5    1.3  1  ZZ               Zinc finger, ZZ type
    1.1e-08   35.1   0.0    2.8e-08   33.8   0.0    1.8  1  Myb_DNA-binding  Myb-like DNA-binding domain
    1.6e-08   34.3   7.4      4e-08   33.1   7.4    1.7  1  SWIRM-assoc_1    SWIRM-associated region 1
    3.2e-06   27.3   1.7    0.00014   22.0   0.1    3.5  3  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0048   17.0   0.9     0.0084   16.2   0.9    1.3  1  zf-UBR           Putative zinc finger in N-recognin (UBR box)
  ------ inclusion threshold ------
      0.076   13.1   0.9       0.18   11.9   0.9    1.5  1  Elf1             Transcription elongation factor Elf1 like
       0.11   12.4   6.6        3.3    7.6   0.3    2.4  2  zf-CCHC_2        Zinc knuckle
        0.9    9.5   2.5        4.5    7.3   1.0    2.8  3  DUF4428          Domain of unknown function (DUF4428)
        9.3    7.0   6.0        1.8    9.3   0.1    2.9  4  Zn_ribbon_2      Putative zinc ribbon domain


Domain annotation for each model (and alignments):
>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         3   5.4e+03      46      75 ..      13      36 ..      11      37 .. 0.72
   2 !   96.5   0.3   4.7e-31   8.5e-28       1      89 []      85     170 ..      85     170 .. 0.96
   3 ?   -2.4   0.1       3.6   6.5e+03      45      67 ..     257     279 ..     250     288 .. 0.67
   4 ?   -2.0   0.0       2.6   4.7e+03       9      23 ..     538     552 ..     534     557 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3
       SWIRM 46 enpkeyltvteaqkalkrrrltgidvnlls 75
                e+p ++++v+e q+  +       dvn+++
  CCD25971.2 13 EQPLQQVEVEETQEEEN------ADVNMIQ 36
                67888899999955444......5999886 PP

  == domain 2  score: 96.5 bits;  conditional E-value: 4.7e-31
       SWIRM   1 ps.sewFdpdslhpiEkellselfngk..dktpeeYlkiRnkiialyrenpkeyltvteaqkalkrrrltgidvnllsrihefLerwGlINf 89 
                 ps ++wFd++++h+iE+++ +++f+++   k+p+ Y++ Rn+ii++yr +p eylt+t++     rr+++  dv+++ +ih+fLerwGlIN+
  CCD25971.2  85 PSfAQWFDISKIHEIERRSNPDFFDDSsrFKSPKSYKDTRNFIINTYRLSPFEYLTITAV-----RRNIAM-DVSSIVKIHSFLERWGLINY 170
                 67799*******************999655******************************.....9***99.*******************8 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.6
       SWIRM  45 renpkeyltvteaqkalkrrrlt 67 
                  +n k+ +++t +++++ ++ +t
  CCD25971.2 257 SNNNKQPINKTYVCHTCGNNAVT 279
                 46678999999998888744444 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2.6
       SWIRM   9 dslhpiEkellself 23 
                 ++++++E e+ls+l 
  CCD25971.2 538 KKISDQEAEALSQLE 552
                 789999999999875 PP

>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   3.5   8.9e-15   1.6e-11       2      45 .]     265     308 ..     264     308 .. 0.95

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 8.9e-15
                 SS-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH..H---SSE CS
          ZZ   2 hkkytCdgCseapligvRyhclrcsdYDLCqsCfst.hkagkhkm 45 
                  k y C++C++   + vRyh+lr +d +LC +Cf++ h+++++++
  CCD25971.2 265 NKTYVCHTCGN-NAVTVRYHNLRSKDSNLCARCFKEgHFGANFQS 308
                 6789*******.9******************************96 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   1.6e-11   2.8e-08       2      45 ..     322     366 ..     321     367 .. 0.95

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 1.6e-11
                      SSSBHHHHHHHHHHHHHHTTCHHHHHHHHT.SS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 gkWteeEdelLleavkkhGnrWkkIaerlg.gRtekqcrsrwrny 45 
                      + W+ +E +lLle+++++ ++W+kI +++g +++ ++c ++++++
       CCD25971.2 322 KTWSDQEILLLLEGLEMYEDQWEKIVDHVGgTKSLEDCVEKFLSL 366
                      78****************************99**********976 PP

>> SWIRM-assoc_1  SWIRM-associated region 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   7.4   2.2e-11     4e-08       9      83 ..     424     498 ..     420     499 .. 0.94

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.2e-11
  SWIRM-assoc_1   9 akAkvlasqeereiqrlvaqlvetqlkKlelKLkqfeelEklleaerrelekqrqqLlleRlalkkevlkvaekl 83 
                      A+ la++  +e q+++ +lv++++kKl+lK +++ +lE+ le+er    k+ ++  ++Rl+l k+v++++e+l
     CCD25971.2 424 ESANRLAEKYIQETQAVALELVNLTMKKLDLKYSKLIKLETSLEEERARYIKETERANNDRLSLSKQVAELNEEL 498
                    568899999999**********************************************************99976 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1      0.16   2.8e+02       4      31 ..      62     103 ..      61     119 .. 0.69
   2 ?   -1.0   0.0       1.2   2.1e+03      29      55 ..     287     314 ..     267     318 .. 0.65
   3 !   22.0   0.1   7.9e-08   0.00014       1      44 [.     324     367 ..     324     389 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.16
  Myb_DNA-bind_6   4 eEdeiL....lklvekygn........dWknIaealn..rRt 31 
                     eE ++L    lk   k++         +W  I+++    rR+
      CCD25971.2  62 EEAQKLeeraLKFLAKQTHpiiipsfaQWFDISKIHEieRRS 103
                     7777777744444444433577777789******97664554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.2
  Myb_DNA-bind_6  29 rRtpkqcfdrwkn.kLrpkisrkkwske 55 
                      ++++ c + +k+ +  ++++ + + k 
      CCD25971.2 287 SKDSNLCARCFKEgHFGANFQSTDFIKL 314
                     4677777777777666677777777665 PP

  == domain 3  score: 22.0 bits;  conditional E-value: 7.9e-08
  Myb_DNA-bind_6   1 WteeEdeiLlklvekygndWknIaealn.rRtpkqcfdrwknkLr 44 
                     W+++E  +Ll++ e+y+++W++I ++ +  ++ ++c +++++ L+
      CCD25971.2 324 WSDQEILLLLEGLEMYEDQWEKIVDHVGgTKSLEDCVEKFLS-LP 367
                     ***************************55************9.74 PP

>> zf-UBR  Putative zinc finger in N-recognin (UBR box)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.9   4.7e-06    0.0084      10      43 ..     265     308 ..     254     318 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.7e-06
      zf-UBR  10 evvyrCltCsld...........etsviCeeCfkaskHeghelve 43 
                 + +y C+tC+++           + s +C++Cfk++ H g ++ +
  CCD25971.2 265 NKTYVCHTCGNNavtvryhnlrsKDSNLCARCFKEG-HFGANFQS 308
                 789******************99889*********9.98877744 PP

>> Elf1  Transcription elongation factor Elf1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.9   9.9e-05      0.18      12      54 ..     258     299 ..     251     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 9.9e-05
        Elf1  12 kkkkkklptkFdCpfCnheksvevkldkkekiaevsCkvCges 54 
                 + +k+++++++ C  C+++ +v+v+ ++ +++ +  C  C ++
  CCD25971.2 258 NNNKQPINKTYVCHTCGNN-AVTVRYHNLRSKDSNLCARCFKE 299
                 455677************9.*********99999999999765 PP

>> zf-CCHC_2  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   1.3    0.0022         4       3      11 ..     267     275 ..     266     276 .. 0.88
   2 ?    7.6   0.3    0.0018       3.3       5      15 ..     292     302 ..     292     302 .. 0.92

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0022
   zf-CCHC_2   3 gYvChiCgk 11 
                 +YvCh Cg+
  CCD25971.2 267 TYVCHTCGN 275
                 8******96 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0018
   zf-CCHC_2   5 vChiCgkkGHy 15 
                 +C +C+k GH+
  CCD25971.2 292 LCARCFKEGHF 302
                 599*******8 PP

>> DUF4428  Domain of unknown function (DUF4428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1     0.045        80      17      29 ..     264     276 ..     259     281 .. 0.77
   2 ?    7.3   1.0    0.0025       4.5       2      29 ..     270     299 ..     269     329 .. 0.79
   3 ?   -3.5   0.0       5.6     1e+04      11      21 ..     362     372 ..     358     373 .. 0.53

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.045
     DUF4428  17 leDgyvCkdClkK 29 
                 ++  yvC++C + 
  CCD25971.2 264 INKTYVCHTCGNN 276
                 5667******885 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0025
     DUF4428   2 CaiCgkKigl..lkrlkleDgyvCkdClkK 29 
                 C  Cg++     +++l+ +D ++C  C+k+
  CCD25971.2 270 CHTCGNNAVTvrYHNLRSKDSNLCARCFKE 299
                 778999988856788**************8 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 5.6
     DUF4428  11 llkrlkleDgy 21 
                 ++ +l +eD y
  CCD25971.2 362 KFLSLPIEDKY 372
                 45556666666 PP

>> Zn_ribbon_2  Putative zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2       6.2   1.1e+04      53      75 ..      50      72 ..      25      79 .. 0.48
   2 ?    9.3   0.1     0.001       1.8       2      50 ..     270     314 ..     257     335 .. 0.80
   3 ?   -1.6   0.1       2.5   4.4e+03      42      78 ..     416     452 ..     412     458 .. 0.70
   4 ?   -2.6   0.1       5.2   9.3e+03      41      54 ..     463     476 ..     432     501 .. 0.58

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 6.2
  Zn_ribbon_2 53 kklaeenke...lteeearkllkkll 75
                 ++ ++         eeea+kl ++ l
   CCD25971.2 50 DNNNK---PheiNYEEEAQKLEERAL 72
                 22222...222233455555555444 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.001
  Zn_ribbon_2   2 CqsCGmplkkeedlgteadgsksedYCkyCykdGeftepdltmeemiek 50 
                  C +CG    +      ++  sk ++ C  C+k+G+f   +++  ++i+ 
   CCD25971.2 270 CHTCGNNAVTVRY---HNLRSKDSNLCARCFKEGHFGA-NFQSTDFIKL 314
                  8888877765554...478899999***********99.8888877765 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.5
  Zn_ribbon_2  42 ltmeemiekcvkklaeenkelteeearkllkkllpkL 78 
                  +t++e i   +++lae+  + t+  a +l++ +++kL
   CCD25971.2 416 ETLDEAIPESANRLAEKYIQETQAVALELVNLTMKKL 452
                  6788888888888888875444555666677777766 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 5.2
  Zn_ribbon_2  41 dltmeemiekcvkk 54 
                  ++++ee  ++++k+
   CCD25971.2 463 ETSLEEERARYIKE 476
                  33333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1399  (0.07803); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.61u 0.25s 00:00:00.86 Elapsed: 00:00:00.42
# Mc/sec: 3989.73
//
Query:       CCD25972.2  [L=1182]
Description: hypothetical protein NDAI_0G01970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-23   82.2   1.3    2.4e-23   82.2   1.3    2.7  2  STAG      STAG domain
  ------ inclusion threshold ------
      0.036   13.8   0.4        0.3   10.9   0.0    2.7  3  rve_3     Integrase core domain
       0.23   11.8   3.1       0.53   10.6   0.8    2.8  2  Flu_NS2   Influenza non-structural protein (NS2)


Domain annotation for each model (and alignments):
>> STAG  STAG domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   1.3     4e-27   2.4e-23       7     111 ..     221     349 ..     218     351 .. 0.93
   2 ?   -2.5   0.1      0.81   4.8e+03       8      45 ..     511     547 ..     508     552 .. 0.72

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 4e-27
        STAG   7 skkkklkkfrknlveFfeklvesahekglLy.......dee.................lmenlltwltalSssklRpfRhtaTlialklqtaLvevake 81 
                 +kk+k+k +++n+veF++kl++ a++ +lL+         +                 l+ +lltwl+++S+sk+R+fR+++Tl ++ +q+ L++++  
  CCD25972.2 221 KKKSKYKPLYNNFVEFMSKLLDVANDLQLLFiesspinK-NdetnsennenteitmgpLVLDLLTWLSSFSVSKVRSFRYISTLSLYLFQDYLTNYIMI 318
                 6899***************************97666650.1556899999************************************************* PP

        STAG  82 lske.leklqrqleaekkkkkankkrleele 111
                 l+k+ l+kl++ql+ e+kkk+ nkk+le+l+
  CCD25972.2 319 LDKNyLSKLSKQLAVEEKKKRPNKKTLEKLN 349
                 ****9***********************986 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.81
        STAG   8 kkkklkkfrknlveFfeklvesahekglLydeelmenl 45 
                 + +k  +f +++++Ff ++ ++   ++ + d++l +++
  CCD25972.2 511 STSKNSRFLASVAKFFARITNEK-CQEFMNDNNLPKTI 547
                 55566678889999999998876.57777777776665 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1      0.39   2.3e+03       9      44 ..      82     117 ..      77     124 .. 0.77
   2 ?   -3.8   0.0         2   1.2e+04      45      57 ..     149     161 ..     146     161 .. 0.85
   3 ?   10.9   0.0   5.1e-05       0.3       7      36 ..     437     466 ..     434     477 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.39
       rve_3   9 apgkPqqNglvEsfngtlrdellneelfrslaeare 44 
                 + +k + N  + s n++ ++   ++++  s++ a++
  CCD25972.2  82 NKRKRTNNNGIRSTNKRTKTVPTSRSSVLSSTSAKK 117
                 6688999999********999888888666666655 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 2
       rve_3  45 kleawredYNteR 57 
                 +l++w+e Y ++R
  CCD25972.2 149 LLTSWLETYTENR 161
                 6899*****9988 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 5.1e-05
       rve_3   7 yiapgkPqqNglvEsfngtlrdellneelf 36 
                 + ++gkP++N ++  f++++++++l   l+
  CCD25972.2 437 VDDRGKPTDNSFIRQFFERFKQRILEIALK 466
                 5689*******************9987775 PP

>> Flu_NS2  Influenza non-structural protein (NS2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       0.5     3e+03      24      59 ..     183     221 ..     167     246 .. 0.63
   2 ?   10.6   0.8   8.9e-05      0.53      35      90 ..     334     389 ..     302     393 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.5
                 XXXXXXXXXXXX-CHHH.HH...HHHHHHHHHHHHHHHHC CS
     Flu_NS2  24 kstdlhslqnrnekwre.ql...gqkreeirllieelrhk 59 
                    d+hs +  ne   e ql    qk  e  ll+    hk
  CCD25972.2 183 EDHDVHSNDSSNETIGEvQLmfqRQKIHEFHLLVSK-EHK 221
                 567899999999988764552224666666666543.233 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 8.9e-05
                 X-CHHHHHHHHHHHHHHHHHHHHHC----TTSHHHHHHHHHHHHHHHHHHHHHH-X CS
     Flu_NS2  35 nekwreqlgqkreeirllieelrhklkiaessieqivslsllelllevkdvvevys 90 
                 +ek +    +  e++ l i e++    ++es i+ iv l  ++ + +v++ ++  s
  CCD25972.2 334 EEKKKRPNKKTLEKLNLTIMEIQGNKTVTESIIDNIVKLCFIHRFKDVDESIRSES 389
                 455555566778**************************************999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1700  (0.0948185); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.49
# Mc/sec: 7300.44
//
Query:       CCD25973.2  [L=116]
Description: hypothetical protein NDAI_0G01980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.9e-08   33.0   0.9    1.1e-07   32.6   0.9    1.4  1  ANAPC_CDC26  Anaphase-promoting complex APC subunit CDC26


Domain annotation for each model (and alignments):
>> ANAPC_CDC26  Anaphase-promoting complex APC subunit CDC26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.9   6.1e-12   1.1e-07       1      50 [.       1      65 [.       1     102 [. 0.66

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 6.1e-12
  ANAPC_CDC26  1 MLRRkPTtItLtseDiaeyede...............rqrqkeqaaqqqrsqasastsqasdtda 50
                 ML R+PTt++L+ +Di+e+  e               +++   q+a  ++s+++++ ++ ++t +
   CCD25973.2  1 MLGRPPTTLQLNKDDISELVKEleerklklkieanrrKLQVSVQQAPLKKSNSAMGSTSLNETIT 65
                 9********************99888774444444433344444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1291  (0.0720062); expected 358.6 (0.02)
Passed bias filter:                      621  (0.0346366); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 921.18
//
Query:       CCD25974.2  [L=101]
Description: hypothetical protein NDAI_0G01990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       515  (0.0287244); expected 358.6 (0.02)
Passed bias filter:                      372  (0.0207485); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 755.83
//
Query:       CCD25975.2  [L=311]
Description: hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-33  115.8   0.5    4.3e-33  114.0   0.1    1.9  2  RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
      3e-18   65.0   0.0      4e-18   64.6   0.0    1.2  1  RNA_pol_L      RNA polymerase Rpb3/Rpb11 dimerisation domain


Domain annotation for each model (and alignments):
>> RNA_pol_A_bac  RNA polymerase Rpb3/RpoA insert domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   0.1   4.8e-37   4.3e-33       1     111 [.      49     170 ..      49     171 .. 0.93
   2 ?   -0.6   0.0      0.19   1.7e+03      58      75 ..     232     254 ..     194     294 .. 0.53

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 4.8e-37
                    EEEEECTSSS.HHHHHCHHHCSTCBSSCHHHHHHHHCTT-ETSSSSTTCSEEEEEEEEESSEC....EEGGGCBESSSSCEES..........STT CS
  RNA_pol_A_bac   1 VeieentsvlqDEvvaHrlgliplvsedvleillnlkelveeeeegeeeksvelkLnvkgpge....vtagdlkledadveiv..........npd 82 
                    V+ie+nt+vl+DE++aHrlglipl+s d+ + l++++++   +e++++++sv+l+L++ g++e    v+a+dl+++++               n++
     CCD25975.2  49 VQIETNTTVLADEFIAHRLGLIPLQSTDIEQ-LEYSRDC--FCEDHCDKCSVVLTLQAFGESEsttnVYAKDLVIVSNLLGRNighpiiqdkeNNG 141
                    89**************************999.*******..7*******************9999**********855544446677789999*** PP

                    SEEEEEETT-EEEEEEEEEEESSEECTTT CS
  RNA_pol_A_bac  83 ilIakLrkgqeleleakvkkGiGkehakf 111
                    +lI+kLrkgqel+l++ +kkGi+kehak+
     CCD25975.2 142 VLICKLRKGQELKLTCVAKKGIAKEHAKW 170
                    ****************************9 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.19
                    EESSEC.....EEGGGCBESSSS CS
  RNA_pol_A_bac  58 vkgpge.....vtagdlkledad 75 
                    v+  g      v+ + +++ +++
     CCD25975.2 232 VETVGSisvdqVVVRGINTLQQK 254
                    33333333333333333333333 PP

>> RNA_pol_L  RNA polymerase Rpb3/Rpb11 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   4.5e-22     4e-18       2      68 ..      20     254 ..      19     255 .. 0.81

  Alignments for each domain:
  == domain 1  score: 64.6 bits;  conditional E-value: 4.5e-22
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................... RF
   RNA_pol_L   2 fllrgvdhtlgNaLRrillsevpgvaiea...................................................................... 30 
                 f l+++d++l+N++Rr++++e+p++ai++                                                                      
  CCD25975.2  20 FILSNIDLALANSFRRVMIAEIPTLAIDSvqietnttvladefiahrlgliplqstdieqleysrdcfcedhcdkcsvvltlqafgesesttnvyakdl 118
                 99*************************************************999999999999999999999999999999999999999999998888 PP

                 ...............................................................xx.................................. RF
   RNA_pol_L  31 ...............................................................pv.................................. 32 
                                                                                p                                   
  CCD25975.2 119 vivsnllgrnighpiiqdkenngvlicklrkgqelkltcvakkgiakehakwgpaaaiefeydPWnklkhtdywyeqdpqkewpnsknceyedppnege 217
                 888888888888877777777777777777777777777766666666666666665555555005555555555555555555566666666666666 PP

                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   RNA_pol_L  33 .vkvntdkdklilevetdgslkPeealkeAlkiLkek 68 
                  ++++++ + ++++vet+gs+++++++ ++++ L++k
  CCD25975.2 218 pFDYKAKAETFYMNVETVGSISVDQVVVRGINTLQQK 254
                 67999******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2372.87
//
Query:       CCD25976.2  [L=345]
Description: hypothetical protein NDAI_0G02010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0039   17.5   1.9     0.0039   17.5   1.9    3.3  2  DUF4602   Domain of unknown function (DUF4602)
  ------ inclusion threshold ------
       0.09   12.5  18.9       0.15   11.7  18.9    1.4  1  BSP_II    Bone sialoprotein II (BSP-II)


Domain annotation for each model (and alignments):
>> DUF4602  Domain of unknown function (DUF4602)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1  16.4         2   1.8e+04      25      58 ..     142     183 ..      36     193 .. 0.72
   2 !   17.5   1.9   4.3e-07    0.0039      84     126 ..     249     291 ..     242     300 .. 0.90

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 2
     DUF4602  25 k........ksrkkkkaeeeeeenlrqefdLkkarkevhrfg 58 
                 k          ++k + e  eeenl+++++L+  +ke+h++ 
  CCD25976.2 142 KeqeseereMNDNKNDNENLEEENLQNDIELQQFLKESHLLS 183
                 044444433444455555558999***************985 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 4.3e-07
     DUF4602  84 knpyinykelkgekkkakareeeekaeareagvvtkkkkkkkk 126
                 k ++++++++kg++kk  +r ++ ++ a e+g+v  k kk + 
  CCD25976.2 249 KLEKVPMHVRKGMIKKHVERIQRYEKDAAEGGIVLSKVKKGQF 291
                 6689**********************************98775 PP

>> BSP_II  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  18.9   1.7e-05      0.15      46     156 ..      46     166 ..      38     229 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.7e-05
      BSP_II  46 sssdsseEngdGdsseEe...eeeeetsneeenneesn.enedeeseaenttlsattpgygeektqgkgsiG..laaiklpkk....agdieekatkee 134
                  +sdss  n d d ++++   +eee+++n+ +++ +s+ +    ++e++ t++s+++ + g +  + +g     +a +k  kk     +++ ++  ke+
  CCD25976.2  46 VGSDSSSHNSDSDINDNNnddDEEEDSENDGDSDSDSDiDVGSRDNETKVTEKSSSMITRGPKVITFNGPADdfIAPSKKDKKllssGKSLIHTIIKEQ 144
                 578888888887765543100444444444444444442223467788888888888877777655554433225555555543332222233333444 PP

      BSP_II 135 esdeeeeeeeeeeneeeeaevd 156
                 es+e e ++++++ne+ e+e  
  CCD25976.2 145 ESEEREMNDNKNDNENLEEENL 166
                 4444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1450  (0.0808746); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2454.30
//
Query:       CCD25977.2  [L=605]
Description: hypothetical protein NDAI_0G02020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-10   38.5   1.5    2.6e-09   36.9   1.5    1.9  1  HLH       Helix-loop-helix DNA-binding domain


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   1.5   1.5e-13   2.6e-09       1      52 [.     545     598 ..     545     599 .. 0.90

  Alignments for each domain:
  == domain 1  score: 36.9 bits;  conditional E-value: 1.5e-13
                 HHHHHHHHHHHHHHHHHHHHHHHHHCST..CSTTSS-STHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrellP..slppskKlsKaeiLekAveYIkhL 52 
                 ++++h e+E  RR+r+N+al  L +llP    ++ +  sKa i+e+A +YI++L
  CCD25977.2 545 KKTTHREAEAERRNRLNNALTDLNSLLPegLKKSVSIQSKAVIVELASKYIRQL 598
                 799*************************554444459***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1092  (0.0609069); expected 358.6 (0.02)
Passed bias filter:                      273  (0.0152267); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.23s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 4475.08
//
Query:       CCD25978.2  [L=132]
Description: hypothetical protein NDAI_0G02030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.5e-20   71.1   1.0    6.5e-20   71.1   1.0    1.6  1  UCR_hinge        Ubiquinol-cytochrome C reductase hinge prote
    0.00032   20.6  14.4    0.00037   20.4  14.4    1.2  1  Sigma70_ner      Sigma-70, non-essential region
  ------ inclusion threshold ------
      0.013   14.0  19.2      0.015   13.8  19.2    1.0  1  Mpp10            Mpp10 protein
      0.032   12.7  11.1      0.035   12.6  11.1    1.0  1  SGT1             SGT1 protein
      0.089   12.6  14.3       0.14   11.9  14.3    1.4  1  DUF3381          Domain of unknown function (DUF3381)
        0.1   12.1   0.3       0.12   11.8   0.3    1.1  1  DUF4481          Domain of unknown function (DUF4481)
       0.14   12.0   9.3       0.16   11.9   9.3    1.2  1  Spore_coat_CotO  Spore coat protein CotO
       0.18   10.0  18.6       0.19    9.9  18.6    1.0  1  Nop14            Nop14-like family
       0.23   10.6   8.0       0.32   10.1   8.0    1.2  1  D123             D123
       0.24   11.3   8.9       0.29   11.0   8.9    1.2  1  RPN2_C           26S proteasome regulatory subunit RPN2 C-ter
        0.3    9.3  13.3       0.31    9.3  13.3    1.0  1  CDC45            CDC45-like protein
       0.55    8.3  26.3       0.62    8.1  26.3    1.1  1  DNA_pol_phi      DNA polymerase phi
        0.6    9.7  19.5       0.81    9.3  19.5    1.2  1  DDRGK            DDRGK domain
          1    8.1   6.9        1.1    8.0   6.9    1.2  1  Tim54            Inner membrane protein import complex subuni
        1.1    8.4  11.5        1.3    8.2  11.5    1.2  1  TRAP_alpha       Translocon-associated protein (TRAP), alpha 
        1.4    7.6   3.8        1.5    7.5   3.8    1.0  1  Presenilin       Presenilin
        1.6    8.1  17.8        1.7    7.9  17.8    1.1  1  CobT             Cobalamin biosynthesis protein CobT
        1.6    8.0  16.8        1.8    7.8  16.8    1.0  1  BUD22            BUD22
        1.8    8.5   7.0        2.2    8.2   7.0    1.1  1  PDDEXK_6         PDDEXK-like family of unknown function
        1.9    8.2  16.2        2.5    7.8  16.2    1.2  1  DUF4637          Domain of unknown function (DUF4637)
        2.2    7.5   4.0        2.6    7.2   4.0    1.2  1  DUF2428          Putative death-receptor fusion protein (DUF2
        3.2    5.6   5.0        3.2    5.5   5.0    1.0  1  V_ATPase_I       V-type ATPase 116kDa subunit family
        4.2    5.8  14.2        4.1    5.8  14.2    1.0  1  RRN3             RNA polymerase I specific transcription init
        4.7    5.2   7.8        5.2    5.0   7.8    1.1  1  Sporozoite_P67   Sporozoite P67 surface antigen
        4.9    6.5  20.5        5.6    6.3  20.5    1.1  1  SDA1             SDA1
        7.1    6.3  21.9        8.4    6.0  21.9    1.2  1  Cwf_Cwc_15       Cwf15/Cwc15 cell cycle control protein
        8.5    5.3  16.9        9.8    5.1  16.9    1.3  1  Pes-10           Pes-10
        9.6    5.2  23.6         11    5.1  23.6    1.2  1  DUF2457          Protein of unknown function (DUF2457)


Domain annotation for each model (and alignments):
>> UCR_hinge  Ubiquinol-cytochrome C reductase hinge protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   1.0     1e-22   6.5e-20       1      66 []      61     132 .]      61     132 .] 0.98

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 1e-22
   UCR_hinge   1 DpkeklreeCeekekCkklkkhyeeCveRVksrse......aeteedCveelfdlvhcvdhCvapklfkkLK 66 
                 D+ ++lr+e +e+ek ++l k+y +C eRV+ +++       +++edC+ee+f+l+h++d+ +ap+lf+kLK
  CCD25978.2  61 DQFDELRNELKETEKGQRLLKAYSDCSERVRIEQQrpdyddLDHKEDCIEEFFHLQHYLDSTAAPRLFDKLK 132
                 899*******************************9******99****************************9 PP

>> Sigma70_ner  Sigma-70, non-essential region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4  14.4   5.8e-07   0.00037      34      90 ..      22      87 ..       3     119 .. 0.66

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 5.8e-07
  Sigma70_ner 34 eeeeeeeeeedeeeeeeeedddeeeseseaadeeelkeealekfeelreqyeklrk...........a 90
                 ++++e+    de+e eeee+d++ee+e+e+++eee+++e   +f+elr+ +++++k           +
   CCD25978.2 22 KADDEDPV--DEQEAEEEEEDEGEEEEEEEEEEEEDEDELHDQFDELRNELKETEKgqrllkaysdcS 87
                 22232222..33333333444457899***************************99887544444430 PP

>> Mpp10  Mpp10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8  19.2   2.4e-05     0.015      70     186 ..       8     117 ..       2     124 .. 0.52

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.4e-05
       Mpp10  70 vleellkkiskllakkeklklldeeeeeeseeseeeeeeeeeeeeeeeeeeeeeeeeeeekeeseekeeeeesekeeeeededeeeeieeeekkskkkk 168
                  le l+++i  ++ak ++ + +de+e ee+ee+e eeeeeeeeeeee  +e+e +++  ++ ++e ke+e+ ++  +  +d  e   ie+++ + ++  
  CCD25978.2   8 YLELLKETIIPVVAKADDEDPVDEQEAEEEEEDEGEEEEEEEEEEEE--DEDELHDQ-FDELRNELKETEKGQRLLKAYSDCSERVRIEQQRPDYDD-- 101
                 46777888999999998888888888887665333333333333333..33333333.233333333333333333333444444444444433333.. PP

       Mpp10 169 kkkkkksvvddkFFklde 186
                     +k++   +FF l++
  CCD25978.2 102 --LDHKEDCIEEFFHLQH 117
                 ..4667888888888876 PP

>> SGT1  SGT1 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6  11.1   5.4e-05     0.035     485     569 ..      17     101 ..       2     115 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.4e-05
        SGT1 485 ieeeldsddldedssedsdeedeedeeeeeaeeeskeeekeslksYmdqmdeELaqttvgksFekkkkkkekakkkeekeetsee 569
                 i+   + dd d  ++++ +ee+e++ eeee+eee++ee +++l++  d++ +EL++t+ g+   k+ ++ ++  + e+++++ ++
  CCD25978.2  17 IPVVAKADDEDPVDEQEAEEEEEDEGEEEEEEEEEEEEDEDELHDQFDELRNELKETEKGQRLLKAYSDCSERVRIEQQRPDYDD 101
                 4444555666644444444444444455578999999999********************9999888777665555555544333 PP

>> DUF3381  Domain of unknown function (DUF3381)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  14.3   0.00022      0.14     103     152 ..      29      78 ..       7      84 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00022
                 ............XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3381 103 ekeeeeeedeeeeeeeeeeaeeeeldeeeeiekeleelkeeekkkkKrek 152
                  +e+e ee+ee+e eeeee+eeee+++e+e++++ +el++e+k+ +K ++
  CCD25978.2  29 VDEQEAEEEEEDEGEEEEEEEEEEEEDEDELHDQFDELRNELKETEKGQR 78 
                 22222222222233455566666667888999999999999999988654 PP

>> DUF4481  Domain of unknown function (DUF4481)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   0.00019      0.12     206     280 ..      28     105 ..       6     110 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00019
     DUF4481 206 aeeeeedeeeeeaPLLveeg...sseqkkeltvtelvsLipeasaealAqqLLvvysglYvrLlvterLpqaseksHa 280
                 + +e+e+eeeee     ee+   ++e+ ++  + +  +L  e ++ ++ q+LL +ys +  r+++ ++ p   +  H 
  CCD25978.2  28 PVDEQEAEEEEEDEGEEEEEeeeEEEEDEDELHDQFDELRNELKETEKGQRLLKAYSDCSERVRIEQQRPDYDDLDHK 105
                 4444443332222222222122145555555666666777777999**************999999999887776665 PP

>> Spore_coat_CotO  Spore coat protein CotO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   9.3   0.00025      0.16      64     115 ..      20      76 ..       6     120 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00025
  Spore_coat_CotO  64 ekkkeaaePaeqeeeekaeeeekkeeeeqkeeeeekqetvea.....ekPeqearkP 115
                       +k++ ++P+ ++e e++ee+e +eeee++eeeee+++         ++  +e++k 
       CCD25978.2  20 VAKADDEDPVDEQEAEEEEEDEGEEEEEEEEEEEEDEDELHDqfdelRNELKETEKG 76 
                      456667889888888888887777777776666666553322344434444555555 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  18.6    0.0003      0.19     357     419 ..      24      75 ..      11     124 .. 0.42

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0003
       Nop14 357 edddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeelleeek 419
                 +d+d v++++ eeeee+e +eeeee+e    eeeeded+l+d+ +e       l +el+e+ek
  CCD25978.2  24 DDEDPVDEQEAEEEEEDEGEEEEEEEE----EEEEDEDELHDQFDE-------LRNELKETEK 75 
                 222222222222222222222222222....222233333332222.......2222211111 PP

>> D123  D123
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   8.0   0.00051      0.32      21      84 ..       8      73 ..       1      78 [. 0.56

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00051
                HHHHHCSSSEE-----.................--------------------...HHHHHHHHHH CS
        D123 21 fleYLeedgivlpeeseeeke..saeesesdsdseesdsedeeeeeeeeeepseefpeleekikea 84
                +le L+e  i +  ++++e+   ++e++e+++d+ e+++e+eeeeee+e+e + +f el++++ke+
  CCD25978.2  8 YLELLKETIIPVVAKADDEDPvdEQEAEEEEEDEGEEEEEEEEEEEEDEDELHDQFDELRNELKET 73
                3444444444443333333333344444555555555555555555555558999*****999985 PP

>> RPN2_C  26S proteasome regulatory subunit RPN2 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   8.9   0.00046      0.29      68     114 ..      22      68 ..       3      98 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00046
                 ---------------------------------SS----SSEEEEES CS
      RPN2_C  68 eekeedkmdvdeekeekekkekekkekekeeekkkkekektfekleN 114
                 ++++ed +d++e++ee+e++ +e++e+e+eee+++ e + +f +l N
  CCD25978.2  22 KADDEDPVDEQEAEEEEEDEGEEEEEEEEEEEEDEDELHDQFDELRN 68 
                 34445555555555555555555555555555555555556665555 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  13.3   0.00049      0.31     132     182 ..      29      82 ..       4     124 .. 0.39

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00049
       CDC45 132 sdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee....sd 182
                 + +e+e eeee+d+ eeeeeeeee+eede+e +++ ++ r++ +++e+     ++
  CCD25978.2  29 V-DEQEAEEEEEDEGEEEEEEEEEEEEDEDELHDQFDELRNELKETEKGqrllKA 82 
                 1.12211222222222222222222222222222222222211111111223311 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  26.3   0.00096      0.62     644     702 ..      24      88 ..      10     111 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00096
  DNA_pol_phi 644 deeddeeeeeeddeededseedddeeesdedeededdedvdeidelreklaealgesg.........e 702
                  d+ed  +e+e ++ee++   e ++eee++e+ee+++de  d+ delr++l+e  + ++         e
   CCD25978.2  24 DDEDPVDEQEAEEEEED---EGEEEEEEEEEEEEDEDELHDQFDELRNELKETEKGQRllkaysdcsE 88 
                  22222222222222222...23333333333333344444444479****999999995444433330 PP

>> DDRGK  DDRGK domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  19.5    0.0013      0.81      24     105 ..      32     113 ..      21     119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0013
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHH CS
       DDRGK  24 eeeereerkkleekreeerkekeekeeekekkkeeeerkkeeekerkeqeeyeklksefvveeegtekesaeeeeklleefi 105
                 +e+e+ee    ee++eee +e+e++ e +++  e +++ ke ek ++  ++y   ++ + +e++  + ++ +++e  +eef 
  CCD25978.2  32 QEAEEEEEDEGEEEEEEEEEEEEDEDELHDQFDELRNELKETEKGQRLLKAYSDCSERVRIEQQRPDYDDLDHKEDCIEEFF 113
                 2333333344444555666677778888889999999999***************************999999999999985 PP

>> Tim54  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   6.9    0.0017       1.1     176     252 ..       6      82 ..       3     126 .. 0.60

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0017
       Tim54 176 KEYirGlhEGlLGPldkpeepeeeeaeeeeeeeeeekeeeeeeeeeeeeekeeekeeekeeeeeeeekekkkkvpkp 252
                  EY++ l+E ++  + k  ++ + +++e+eeeee+e eeeeeeeeeeee+++e +++ +e ++e +e+ek ++ +k 
  CCD25978.2   6 TEYLELLKETIIPVVAKADDEDPVDEQEAEEEEEDEGEEEEEEEEEEEEDEDELHDQFDELRNELKETEKGQRLLKA 82 
                 57888888877766666543333333333333333333333333333334444444444444444444444444444 PP

>> TRAP_alpha  Translocon-associated protein (TRAP), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  11.5     0.002       1.3      25      69 ..      20      59 ..       2      85 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.002
  TRAP_alpha 25 aaaaaeedevddelvdveaedeeveeeeeeeeeeeeeeeedeeel 69
                 a+a +ed vd++ ++ e+ede +eeeeee   eeeee+ede  l
  CCD25978.2 20 VAKADDEDPVDEQEAEEEEEDEGEEEEEEE---EEEEEDEDE--L 59
                344455666666633322222222222222...222222222..2 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   3.8    0.0024       1.5     232     286 ..      30      84 ..       5     114 .. 0.42

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0024
  Presenilin 232 vaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessa 286
                  ++++eeee+++ +ee++e+++eee+e+e +++ ++ +++ +e+e+ ++  ++ +
  CCD25978.2  30 DEQEAEEEEEDEGEEEEEEEEEEEEDEDELHDQFDELRNELKETEKGQRLLKAYS 84 
                 1222222222222233333333333333333333333333333333333333332 PP

>> CobT  Cobalamin biosynthesis protein CobT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  17.8    0.0027       1.7     206     261 ..      23      75 ..       3     106 .. 0.48

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0027
        CobT 206 esaeepeeedeeeeedeeeeeeeseeeeeegedddkeeqeeaaseeeeeededees 261
                    e+p +e+e+eee+e e+eee   eeee+e++++e++ +++ +e  +e +++e+
  CCD25978.2  23 ADDEDPVDEQEAEEEEEDEGEEE---EEEEEEEEEDEDELHDQFDELRNELKETEK 75 
                 22233333333333322222222...233333333333333333333333333333 PP

>> BUD22  BUD22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  16.8    0.0028       1.8     168     225 ..      28      97 ..      12     122 .. 0.45

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0028
       BUD22 168 esdkeeesedsedeekeeseddeeeeeededdedaee.......deedeeaeerelaqydglla........s 225
                  +d++e++e++   e+e +e++eeeeee+ed+++ ++       + +++e+ +r l++y +  +         
  CCD25978.2  28 PVDEQEAEEEE---EDEGEEEEEEEEEEEEDEDELHDqfdelrnELKETEKGQRLLKAYSDCSErvrieqqrP 97 
                 11222222222...22333333333333333333333343444433444555555555544222344433331 PP

>> PDDEXK_6  PDDEXK-like family of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.0    0.0034       2.2      16      79 ..      31      94 ..      19     119 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0034
    PDDEXK_6 16 eek.eeeeerenefeeeseedsdeekdsseeaaellkellesassaerklladvseavekakkev 79
                e++ eeeee+e e+eee+ee+++e++d+ +++ ++l++ l+++++  ++ll++ s+  e+ + e+
  CCD25978.2 31 EQEaEEEEEDEGEEEEEEEEEEEEDEDELHDQFDELRNELKETEK-GQRLLKAYSDCSERVRIEQ 94
                122112222222233334444455555566666666665555554.4556666666666644333 PP

>> DUF4637  Domain of unknown function (DUF4637)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  16.2    0.0039       2.5      10      65 ..      26      84 ..      17      99 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0039
     DUF4637 10 eelea.reveeeeaeeeseeedeeedraeeesaaege..eesreaeeaegrekgsvsys 65
                e++ + +e+eeee++e++eee+eee+++e+e + +++  e ++e++e+e+ ++   +ys
  CCD25978.2 26 EDPVDeQEAEEEEEDEGEEEEEEEEEEEEDEDELHDQfdELRNELKETEKGQRLLKAYS 84
                44433134444444444444444444444333333332266677777776656555555 PP

>> DUF2428  Putative death-receptor fusion protein (DUF2428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.0    0.0041       2.6       5      62 ..       4      56 ..       1      73 [. 0.57

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0041
     DUF2428  5 rllelcerisevvlpvvsssspegllpedldseeesaeeeeeeeeeeeeekkekeekk 62
                 + e +e + e++ pvv++   e+ ++e++++eee++e eeeeeeee     e+ee++
  CCD25978.2  4 TVTEYLELLKETIIPVVAKADDEDPVDEQEAEEEEEDEGEEEEEEEE-----EEEEDE 56
                566667777788999***99999866665555444432222211111.....122222 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.0    0.0051       3.2      60     115 ..      31      86 ..       2     119 .. 0.51

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0051
  V_ATPase_I  60 eesleapeekeldeleeelekleeelkelnenleklkkelnelvelkavlekakef 115
                 e++ e++ee+e +e eee e+ ee+  el+++ ++l++el+e ++ + +l+  +++
  CCD25978.2  31 EQEAEEEEEDEGEEEEEEEEEEEEDEDELHDQFDELRNELKETEKGQRLLKAYSDC 86 
                 33333333444444444444444444444444444444444444444444444444 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  14.2    0.0064       4.1     187     262 ..       5      75 ..       1     131 [. 0.44

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0064
        RRN3 187 lteycpelsedileliverlikiDVeiqveledlddeedeeleeeleededdedddeddeesdlddlssdeeaeed 262
                 +tey + l+e+i+ ++ +   +  V+ q e e+ +++e ee+eee ee+e+ded+ +d+    +d+l ++ +++e+
  CCD25978.2   5 VTEYLELLKETIIPVVAKADDEDPVDEQ-EAEEEEEDEGEEEEEEEEEEEEDEDELHDQ----FDELRNELKETEK 75 
                 6677777777776655554444445444.444444444444444433333333333333....3333332221111 PP

>> Sporozoite_P67  Sporozoite P67 surface antigen
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.8    0.0082       5.2     100     148 ..      31      82 ..       9      97 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0082
  Sporozoite_P67 100 qsdteineddkGskedseedddeeeee...dnkstsskdgkgskkaqpgvss 148
                     ++++e +e+d+G++e++ee+++ee+e+   d+      + k+++k+q  +++
      CCD25978.2  31 EQEAEEEEEDEGEEEEEEEEEEEEDEDelhDQFDELRNELKETEKGQRLLKA 82 
                     3455666666666655554444322221112222333444777777766555 PP

>> SDA1  SDA1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  20.5    0.0088       5.6     137     197 ..      24      77 ..      13     107 .. 0.42

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0088
        SDA1 137 edeeeeeeeeeekeekeeeeeeeeeeeeeeeeeeeeeekekkkkkakeaseeekkkekeee 197
                 +de+  +e+e+e+ee++e+eeee eeeeeeee+e+e +++ +      + ++e k++++ +
  CCD25978.2  24 DDEDPVDEQEAEEEEEDEGEEEE-EEEEEEEEDEDELHDQFD------ELRNELKETEKGQ 77 
                 33332222222222222222222.222222222222222222......2222222222222 PP

>> Cwf_Cwc_15  Cwf15/Cwc15 cell cycle control protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  21.9     0.013       8.4     112     175 ..      22      85 ..       4     107 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.013
                 ---------------------------------------------------------------- CS
  Cwf_Cwc_15 112 daddedseeeeeeeeeesdddsdsdsdddddedetaeLlrELekikreraeekerkerekaeee 175
                  added  +e+e eeee+d+ ++++++++++e++++eL   ++ +++e +e ++ +   ka ++
  CCD25978.2  22 KADDEDPVDEQEAEEEEEDEGEEEEEEEEEEEEDEDELHDQFDELRNELKETEKGQRLLKAYSD 85 
                 4555555556666777788888888888888999999**********99888777666655554 PP

>> Pes-10  Pes-10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  16.9     0.015       9.8     190     236 ..      25      69 ..       4     116 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.015
      Pes-10 190 diededeedesssstdsgiesedeElveereeeeeeeaerleaaige 236
                 d + +de++++++++d g e+e+eE  ee+ee+e e +++++++  e
  CCD25978.2  25 DEDPVDEQEAEEEEEDEGEEEEEEE--EEEEEDEDELHDQFDELRNE 69 
                 3344444444445555554444444..44444444444444444444 PP

>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  23.6     0.017        11      46      89 ..      23      66 ..       5     108 .. 0.57

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.017
     DUF2457 46 aeeEaeeeeeeeeddeedeeddddddddedddedddeedededd 89
                a++E   +e+e+e++eede ++++++++e+++++d+ +d+ ++ 
  CCD25978.2 23 ADDEDPVDEQEAEEEEEDEGEEEEEEEEEEEEDEDELHDQFDEL 66
                44444444445444444444444444444444443333333311 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2790  (0.155614); expected 358.6 (0.02)
Passed bias filter:                     1305  (0.0727871); expected 358.6 (0.02)
Passed Vit filter:                       326  (0.0181828); expected 17.9 (0.001)
Passed Fwd filter:                        50  (0.00278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.62u 0.33s 00:00:00.95 Elapsed: 00:00:00.43
# Mc/sec: 928.22
//
Query:       CCD25979.2  [L=63]
Description: hypothetical protein NDAI_0G02040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      8e-24   83.7   9.4    1.1e-23   83.3   9.4    1.2  1  Ribosomal_L29e  Ribosomal L29e protein family


Domain annotation for each model (and alignments):
>> Ribosomal_L29e  Ribosomal L29e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   9.4     6e-28   1.1e-23       1      40 []       3      42 ..       3      42 .. 1.00

  Alignments for each domain:
  == domain 1  score: 83.3 bits;  conditional E-value: 6e-28
  Ribosomal_L29e  1 KsKNhTnHNqsrKaHRNGIKkpksqrykslkgvdpkflrN 40
                    KsKNhT+HNq++KaHRNGIKkpk+ +y+slkgvdpkf+rN
      CCD25979.2  3 KSKNHTAHNQTKKAHRNGIKKPKTYKYPSLKGVDPKFRRN 42
                    9*************************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 498.10
//
Query:       CCD25980.2  [L=388]
Description: hypothetical protein NDAI_0G02050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-16   58.6   0.1    2.1e-08   33.9   0.0    3.2  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.1e-12   2.1e-08       2      69 ..      12      85 ..      11      85 .. 0.91
   2 !   21.2   0.0   1.1e-08   0.00019       1      36 [.     187     219 ..     187     262 .. 0.82

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 1.1e-12
                EEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.......TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1  2 fVgnLppdvteeeLkelFskfGpiksiklvrd.......etgkskgfafVeFeskedAekAlealngkklggrel 69
                 ++nL++++ e+eL+ ++++++ + s+ +v++       +  ++ g+a+Ve  s e+Aek ++ ln+k+++g++l
  CCD25980.2 12 SIRNLSYYTGEQELRNYLKDYEIV-SLFIVTEtvrgikeRLARPLGIAYVELSSIENAEKVIKDLNKKQFQGKTL 85
                69********************99.88888877877766778999***************************986 PP

  == domain 2  score: 21.2 bits;  conditional E-value: 1.1e-08
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTT CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetg 36 
                 l+++ Lp++vt+eeL+e+F++++p  +i ++r+  +
  CCD25980.2 187 LYCSSLPKNVTDEELREFFKGYNPQ-EIWIYRQ--K 219
                 799*********************8.9999886..2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1337  (0.0745719); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2740.44
//
Query:       CCD25981.2  [L=254]
Description: hypothetical protein NDAI_0G02060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-44  151.4   3.5    2.2e-44  150.7   3.5    1.3  1  Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
    2.1e-13   50.0   0.2    5.7e-13   48.6   0.2    1.7  1  Ribosomal_L2    Ribosomal Proteins L2, RNA binding domain


Domain annotation for each model (and alignments):
>> Ribosomal_L2_C  Ribosomal Proteins L2, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   3.5   2.4e-48   2.2e-44       1     115 [.      97     224 ..      97     234 .. 0.92

  Alignments for each domain:
  == domain 1  score: 150.7 bits;  conditional E-value: 2.4e-48
                     SSSS-EBSSSS-TTB-BBSE-SSTTS--SSS-SSSB-EEBB-B...SSEEEEEETTS-EEEEETTSBEBES-BS-TTCTT----STTHHHHT... CS
  Ribosomal_L2_C   1 kvGnvlplknipeGtivhnielkpgkggklarsaGtyaqvvak..egkkvtvklpSgevrkvssecrAtiGvvsngehkekklgkAgrkrwl... 90 
                     +vGnvlpl+++peGtiv n+e++pg++g +ar++G+y+ ++++  +++k++v+lpSg ++ +ss++r +iGvv++g++ +k+l+kAgr+ ++   
      CCD25981.2  97 NVGNVLPLGSVPEGTIVSNVEERPGDRGAIARASGNYVIIIGHnpDENKTRVRLPSGAKKIISSDARGVIGVVAGGGRVDKPLLKAGRAFHKyrl 191
                     58*****************************************6559************************************************ PP

                     ..TBS----SSSS-TTTSSS--SS....SS..- CS
  Ribosomal_L2_C  91 ..grrpkvrGvamnpvdHphGGGe....Gk..t 115
                       + +pk+rGvamnpvdHphGGG+    Gk  t
      CCD25981.2 192 krNSWPKTRGVAMNPVDHPHGGGNhqhiGKasT 224
                     *9**********************666666322 PP

>> Ribosomal_L2  Ribosomal Proteins L2, RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.2   6.4e-17   5.7e-13       4      76 ..      14      89 ..      11      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 48.6 bits;  conditional E-value: 6.4e-17
                  TT--BSSTT--------EE-B--S---SS--EEEEEEE--TT-SS-EEEEEETT.....TEEEEEE--SS--SS-EE- CS
  Ribosomal_L2  4 nsgritvrhrggGhkkkyrlidfkrnkekvkgkVveieyDpgRsApiAlvkyed.....gekryiiapeglkvGdtvv 76
                  + + +++r r+g   +k r +d+++++++++g V++i +D gR Ap+A v++ d      ++  +ia eg+++G++++
    CCD25981.2 14 SIFTSHTRLRQG--AAKLRTLDYAERHGYIRGIVKQIVHDAGRGAPLAKVVFRDpykykLREEIFIANEGVHTGQFIY 89
                  44999*******..99**************************************8777666679*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       296  (0.0165096); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1866.06
//
Query:       CCD25982.2  [L=1171]
Description: hypothetical protein NDAI_0G02070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-66  223.2  25.1    1.8e-64  217.2  25.1    2.7  1  SMC_N         RecF/RecN/SMC N terminal domain
    2.7e-19   69.6   0.0    8.5e-19   68.0   0.0    1.9  1  SMC_hinge     SMC proteins Flexible Hinge Domain
    1.1e-07   32.0  24.6    1.1e-07   32.0  24.6    4.4  4  AAA_15        AAA ATPase domain
      3e-06   27.3  23.9    7.8e-05   22.6   0.7    4.4  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.7e-05   23.8   0.0    0.00015   21.5   0.0    2.2  2  AAA_29        P-loop containing region of AAA domain
      0.008   16.6   8.5      0.008   16.6   8.5    7.6  6  DUF16         Protein of unknown function DUF16
  ------ inclusion threshold ------
      0.028   13.6   0.2        6.2    5.8   0.0    2.8  2  DUF3866       Protein of unknown function (DUF3866)
      0.075   13.5   0.1      0.075   13.5   0.1    5.9  4  ABC_tran      ABC transporter
       0.11   12.9 126.5      0.048   14.2  53.5    7.3  4  AAA_23        AAA domain


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.2  25.1   9.2e-68   1.8e-64       2     218 ..       3    1165 ..       2    1167 .. 0.99

  Alignments for each domain:
  == domain 1  score: 217.2 bits;  conditional E-value: 9.2e-68
                  EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEE....SSSSS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxx RF
       SMC_N    2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkk....lkiek 94  
                  +++l+i++Fksya++tvi +++++f+ai+G NGSGKsn+ldAi+FvLG +s++++r+++l+dli+k + +a ++ka+v+i+fdn+dk+       ++
  CCD25982.2    3 VEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNILDAICFVLGITSMTTVRASNLQDLIYK-RGQAGITKASVTIVFDNTDKTnspiGFNNS 98  
                  799**************************************************************9.9*******************9888777889 PP

                  SCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT........................................................ CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................................................ RF
       SMC_N   95 eevsisrrvkrkgeseykingkevtkkevsellesagiske........................................................ 135 
                   ++s++r+v+ +g+s+y ing+++ ++ v +l++s++++++                                                        
  CCD25982.2   99 AKISVTRQVVLGGTSKYLINGHRAPQQSVLQLFQSVQLNINnpnflimqgkitkvlnmkpkeilslieeaagtkmfedrrekaertmakketklqen 195 
                  99*********************************************************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD25982.2  196 rtllqeeiepkleklrnekriflefqvtqadyekiskvifafdyknltrrydsfqnslnsnkaraeelntlipklsneleslnddlgqirsakqeev 292 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD25982.2  293 ekngkisileekeskilneisrtktslsiciqdyeenikeldkikrnieenktsslqkmesfklieqeyqsintnllkekeackkkeellstlltgi 389 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD25982.2  390 sstgatdggydtqlastneklndvdvvikkltmkmellerelasnepkliqakkdkekdqqyiieceklcseleeqltkdgfdpaltkklrekehfl 486 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD25982.2  487 rqelhrlnneaenlrrrvanldfnytkpspdfdtrsvkgiaaqlfslksesmnsatalqvcaggrlynvvvdnektassllergrlrkrvtiiplnk 583 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD25982.2  584 isartlnerscttkrkklapgkvelalnligyddevsnamefifggslicqdadtakkvtfhpqirtrsitlegdvydpegtlsggsrnnsssllld 680 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD25982.2  681 iqrynessqklqstekelnevinslkqqelnsqrtkviqndlnlarhklslaqrsigannasqiakkneelhheisecqqgiidnqrlmktlqedve 777 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD25982.2  778 rikrdmdefshdrgsklnelkleindltesinkqekiseheyekyqnlqveieqlnseiksdeeslkvtemnldkllkdkseieknfssldkslvdi 874 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD25982.2  875 rgeldeernrllgldeelkelenliklkieakngyeleyqklahdlskskantdsiqkkieelikehdwlqdkdlvegiigqnsginleehrersrq 971 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD25982.2  972 ledkyqemrrkvninimsmienvekkevalrtmirtiekdkikiqetisklneykrealiktwekvttdfgaifsdllpnsfaklvpsegkdvtegl 1068
                  ************************************************************************************************* PP

                  ...............CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC-SCEEEEEEEETT CS
                  ...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ...............lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlekadklvgvtkveng 217 
                                 +LSgG+++L+al+L++A+ +++pap+y+lDe+daaLD ++++++ +l+k++ k +Qfiv+sl+e+m+++a++++++++ +ng
  CCD25982.2 1069 evkvklgtiwkeslvELSGGQRSLIALSLIMALLQFRPAPMYILDEVDAALDLSHTQNIGHLIKTRFKGSQFIVVSLKEGMFSNANRVFRTRF-QNG 1164
                  ******************************************************************************************999.665 PP

                  E CS
                  x RF
       SMC_N  218 v 218 
                  +
  CCD25982.2 1165 T 1165
                  5 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   4.3e-22   8.5e-19       4     116 ..     523     642 ..     520     643 .. 0.86

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 4.3e-22
   SMC_hinge   4 vlGrladlievdegye...kAveaalgnrlqalvvedeetakkiieflkkknagratflpldrikqknkadgandkns......gavplidlvevddel 93 
                 v G  a+l++++++     +A+++ +g+rl ++vv++e+ta +++e  + +  +r+t++pl++i+ +  ++   + ++      +++ +++l+ +dde+
  CCD25982.2 523 VKGIAAQLFSLKSESMnsaTALQVCAGGRLYNVVVDNEKTASSLLERGRLR--KRVTIIPLNKISARTLNERSCTTKRkklapgKVELALNLIGYDDEV 619
                 7889999999995544488**************************988888..79********7666555544444444599***************** PP

   SMC_hinge  94 rkalryllgdtlvvdsldeAeel 116
                 ++a+++++g+ l++++ d+A+++
  CCD25982.2 620 SNAMEFIFGGSLICQDADTAKKV 642
                 ********************997 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0  24.6   5.3e-11   1.1e-07       1     272 [.       1     365 [.       1     513 [. 0.73
   2 ?   -4.4   4.5       5.9   1.2e+04      88     124 ..     434     471 ..     401     542 .. 0.45
   3 ?  -11.0  34.5         9   1.8e+04      77     268 ..     708     899 ..     670     914 .. 0.51
   4 ?   -6.2  28.5         9   1.8e+04     122     288 ..     820    1024 ..     818    1136 .. 0.69

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 5.3e-11
      AAA_15   1 MkIkkikikNFRslkd..veidlseeltvliGkNnsGKSsilealdlFlnnkekkn........................kkvikiekedleifenise 73 
                 Mk+++++i  F+s+    v  d +++++ + G N+sGKS+il+a+ + l  +   +                        + +i++++ d   +  i +
  CCD25982.2   1 MKVEELIIDGFKSYATrtVISDWDPQFNAITGLNGSGKSNILDAICFVLGIT---SmttvrasnlqdliykrgqagitkaSVTIVFDNTDKT-NSPIGF 95 
                 **************986334466777*******************9999988...233588889999999********97334444444433.336889 PP

      AAA_15  74 skdikIdvef....................................................................aek...ekakeyektlkskek 101
                 +++ kI v+                                                                       +   eka+  +  +++k +
  CCD25982.2  96 NNSAKISVTRqvvlggtskylinghrapqqsvlqlfqsvqlninnpnflimqgkitkvlnmkpkeilslieeaagtkmF-EdrrEKAERTMAKKETKLQ 193
                 999999999999999999********************************99998888877777777766554443321.1112222222222222222 PP

      AAA_15 102 kkadlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikkleeslkkee...........elknv 189
                 + ++ll +++e +l k+ ++k + l                   e+ + + ++++ +k  + +d ++l++ ++ +++sl++++           +l+n 
  CCD25982.2 194 ENRTLLQEEIEPKLEKLRNEKRIFL-------------------EFQVTQADYEKISKVIFAFDYKNLTRRYDSFQNSLNSNKaraeelntlipKLSNE 273
                 2222233333333333333333332...................3333334444444444555555555555555555555556666666666677799 PP

      AAA_15 190 lksaiiklllisakRnvsdedsekkssllgklkekileealqekl.....eeelteklkeiqeklkeidkklaeelk.....kilkkkidkik 272
                 l+s+ ++l  i + ++ + e++  k s+l+++ +kil e++++k      +++ +e++ke+++  ++i+++ +++l+     k +++  ++i+
  CCD25982.2 274 LESLNDDLGQIRSAKQEEVEKN-GKISILEEKESKILNEISRTKTslsicIQDYEENIKELDKIKRNIEENKTSSLQkmesfKLIEQEYQSIN 365
                 99999**999999999777655.5599999999999999999988888887777788888877777777777777777655522222222222 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 5.9
      AAA_15  88 kakeyektlkske.kkkadlllkkkesdlkktikdkkl 124
                 ++ + ++++k+ke ++++ ++ +k++s+l + +++  +
  CCD25982.2 434 NEPKLIQAKKDKEkDQQYIIECEKLCSELEEQLTKDGF 471
                 22222222222210122222233333333322222222 PP

  == domain 3  score: -11.0 bits;  conditional E-value: 9
      AAA_15  77 ikIdvef...........aek.ekakeyektlkskekkkadlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelk 163
                  +++ +            + k + a+  + +++ +++ k++ +l +++s+ ++ i d++   k+ + ++e+i+ +++        e ++++ ++ +elk
  CCD25982.2 708 QELNSQRtkviqndlnlaRHKlSLAQRSIGANNASQIAKKNEELHHEISECQQGIIDNQRLMKTLQEDVERIKRDMD--------EFSHDRGSKLNELK 798
                 22222223332222333222234555556666667777777777777777777777777777766666666554443........44555555566666 PP

      AAA_15 164 idkedlkklikkleeslkkeeelknvlksaiiklllisakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelk. 261
                 ++ +dl++ i+k e++ + +e       ++++ l++  ++ n++ + +e++ ++ +  ++k+l++      + e+++++++++++l +i ++l+ee + 
  CCD25982.2 799 LEINDLTESINKQEKISE-HE------YEKYQNLQVEIEQLNSEIKSDEESLKVTEMNLDKLLKD------KSEIEKNFSSLDKSLVDIRGELDEERNr 884
                 665555555552222222.22......22333344444444444444444444555555555554......5667888888888888888888888887 PP

      AAA_15 262 ........kilkkki 268
                         k+l++ i
  CCD25982.2 885 llgldeelKELENLI 899
                 777764443333332 PP

  == domain 4  score: -6.2 bits;  conditional E-value: 9
      AAA_15  122 kklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikkleeslkkee.....................elknvlksaiikl 197 
                  +k+++ + e+ + + +++ ++++ +  +++ +kl k+k e+++++++l+k + +++  l +e                      e kn ++ +++kl
  CCD25982.2  820 EKYQNLQVEIEQLNSEIKSDEESLKVTEMNLDKLLKDKSEIEKNFSSLDKSLVDIRGELDEERnrllgldeelkelenliklkiEAKNGYELEYQKL 916 
                  5667777788888888889999999999999999999999999999999999999999999999***999999955555555555555555555555 PP

      AAA_15  198 llisakRnvsdedsekkssllgklkekileealqekl.................eeelteklkeiqeklkeidkklaeelkkilkkkidkikkfnyk 277 
                    + +k +++++  +kk + l+k  ++         l                  ee +e + ++++k++e+  k++ ++ + +++  +k + +  +
  CCD25982.2  917 AHDLSKSKANTDSIQKKIEELIKEHDW---------LqdkdlvegiigqnsginLEEHRERSRQLEDKYQEMRRKVNINIMSMIENVEKKEVALRTM 1004
                  555555555555555555555555555.........4555557777******998899999999999999999999999997777777777777777 PP

      AAA_15  278 gkkneeieik.........d 288 
                  + + e+++ik         +
  CCD25982.2 1005 IRTIEKDKIKiqetisklnE 1024
                  77777777776444444440 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.7   3.9e-08   7.8e-05       1      26 [.      27      56 ..      27      99 .. 0.78
   2 ?   -1.0   2.2      0.63   1.3e+03      83     141 ..     242     307 ..     175     370 .. 0.63
   3 !   13.9   6.7   1.8e-05     0.035     219     296 ..    1026    1144 ..     773    1144 .. 0.66

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.9e-08
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl....d 26
                +n+++G NgsGKSn+Lda+ ++ ++     
  CCD25982.2 27 FNAITGLNGSGKSNILDAICFVLGItsmtT 56
                8******************88876555441 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.63
      AAA_21  83 v.......eeklssvetllesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfg 141
                 +       + +l s++ + e   +l ++  +e    n++   ir+ ++++++k+  +s+ ++++++
  CCD25982.2 242 LtrrydsfQNSLNSNKARAEELNTLIPKLSNELESLNDDLGQIRSAKQEEVEKNGKISILEEKESK 307
                 222223334444445555555555555555555555555555555555555555555555555544 PP

  == domain 3  score: 13.9 bits;  conditional E-value: 1.8e-05
      AAA_21  219 r.........................................gvvflengdgqelparelSdGtkrll..alltallralkkgsllliDEpEngLHP 272 
                  +                                           v ++ g   + ++ elS G+++l+   l+ all+ ++  + +++DE+++ L+ 
  CCD25982.2 1026 KrealiktwekvttdfgaifsdllpnsfaklvpsegkdvtegLEVKVKLGTIWKESLVELSGGQRSLIalSLIMALLQFRPA-PMYILDEVDAALDL 1121
                  033344444455555555555566666666666666666655555555555556677889*******7689**********9.************** PP

      AAA_21  273 kllrrllellkelsr.ngaQviltT 296 
                  + +  +  l+  ++r +g+Q+i+++
  CCD25982.2 1122 SHTQNIGHLI--KTRfKGSQFIVVS 1144
                  **********..3333689**9976 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   7.4e-08   0.00015      24      46 ..      27      49 ..      13      61 .. 0.84
   2 ?   -1.6   0.0       1.2   2.4e+03       5      34 ..     362     393 ..     359     394 .. 0.67

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 7.4e-08
      AAA_29 24 atlltGpsGsGKSTllDAiqalL 46
                +  +tG +GsGKS +lDAi ++L
  CCD25982.2 27 FNAITGLNGSGKSNILDAICFVL 49
                578*****************998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
      AAA_29   5 qlvNWgtfdghtieidlkg..atlltGpsGsG 34 
                 q +N   ++++++  + ++  +tlltG s +G
  CCD25982.2 362 QSINTNLLKEKEACKKKEEllSTLLTGISSTG 393
                 5566666666555555555688*****99887 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5  10.4         9   1.8e+04      25     102 ..     246     336 ..     170     338 .. 0.74
   2 ?   -1.3   4.7       1.5   3.1e+03      51      98 ..     317     367 ..     294     372 .. 0.59
   3 ?   -0.9   4.9       1.2   2.4e+03      31      82 ..     405     456 ..     395     500 .. 0.72
   4 ?   -0.6   8.1      0.93   1.8e+03      21      94 ..     694     774 ..     687     780 .. 0.70
   5 !   16.6   8.5     4e-06     0.008      22      96 ..     780     854 ..     778     862 .. 0.92
   6 ?  -10.8  14.6         9   1.8e+04      53      53 ..     949     949 ..     857    1039 .. 0.57

  Alignments for each domain:
  == domain 1  score: -4.5 bits;  conditional E-value: 9
                 HHHB-.....BHHHHHHHHHHHH..............HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHHHHHHHH CS
       DUF16  25 lnefkds...nkqrLkkieakvd...........klgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkinkRlDsi 102
                 ++ f++s   nk+r +++++ +             lg+  ++ +++vek g ki+ l+++  +  +e+ + + +l + ++  ++  k lD+i
  CCD25982.2 246 YDSFQNSlnsNKARAEELNTLIPklsneleslndDLGQIRSAKQEEVEKNG-KISILEEKESKILNEISRTKTSLSICIQDYEENIKELDKI 336
                 555655555566666666666664444444444333333344445555544.5777888877777778888888888888888888888887 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHHHHHHHHH..........HHHHHHHHHHHHHHH CS
       DUF16  51 nkleqkvekqgekikelkveqkaqgeeln...kvdetleliletLqkinkR 98 
                   l   ++  +e+ikel +     +e+     +  e+++li +  q+in  
  CCD25982.2 317 TSLSICIQDYEENIKELDKIKRNIEENKTsslQKMESFKLIEQEYQSINTN 367
                 334445666667777665544333332224446678899999999999865 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 1.2
                 .BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH...... CS
       DUF16  31 snkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvd 82 
                 s++++L++++  ++kl  +++ le +    + k+ + k++ ++ ++ + + +
  CCD25982.2 405 STNEKLNDVDVVIKKLTMKMELLERELASNEPKLIQAKKDKEKDQQYIIECE 456
                 6788888888888888888888888888777776555555555444444433 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.93
                 BHHHHHHB-........BHHHHHHHHHHHH...HHHHHHHHHHH.HHHHHHHHHHHHHHHHHH.......HHHHHHHHHHH CS
       DUF16  21 Trkqlnefkds......nkqrLkkieakvdklgeqinkleqkve.kqgekikelkveqkaqgeelnkvdetleliletLqk 94 
                 T k+lne  +s      n qr k i++ ++   ++++  +  +  +   +i + ++e +    e ++     + +++tLq+
  CCD25982.2 694 TEKELNEVINSlkqqelNSQRTKVIQNDLNLARHKLSLAQRSIGaNNASQIAKKNEELHHEISECQQGIIDNQRLMKTLQE 774
                 99*****65555555899999999999999888888877766651455788888877777777676555555555555554 PP

  == domain 5  score: 16.6 bits;  conditional E-value: 4e-06
                 HHHHHHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHHHH CS
       DUF16  22 rkqlnefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqkin 96 
                 +++++ef ++   +L++++ +++ l e+ink+e++ e+  ek ++l+ve+++ + e+++ +e+l++    L+k+ 
  CCD25982.2 780 KRDMDEFSHDRGSKLNELKLEINDLTESINKQEKISEHEYEKYQNLQVEIEQLNSEIKSDEESLKVTEMNLDKLL 854
                 689*********************************************************999999877777765 PP

  == domain 6  score: -10.8 bits;  conditional E-value: 9
                 H CS
       DUF16  53 l 53 
                 l
  CCD25982.2 949 L 949
                 1 PP

>> DUF3866  Protein of unknown function (DUF3866)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2    0.0081        16     264     310 ..     970    1013 ..     950    1020 .. 0.67
   2 ?    5.8   0.0    0.0031       6.2      46      80 ..    1121    1156 ..    1109    1170 .. 0.69

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0081
     DUF3866  264 eqleel.aelakkhelvevaeekellealeeskvklstMGRgldedpa 310 
                  +qle++ +e+++k    ++ +  ++ e++e+ +v l+tM R++++d+ 
  CCD25982.2  970 RQLEDKyQEMRRKV---NI-NIMSMIENVEKKEVALRTMIRTIEKDKI 1013
                  34444212233333...33.345688999*****************86 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0031
     DUF3866   46 edeeek.ghivKlrYtplQvkvlaveeqespyhell 80  
                   +++++ gh++K r+   Q+ v++  e     ++++
  CCD25982.2 1121 LSHTQNiGHLIKTRFKGSQFIVVSLKEGMFSNANRV 1156
                  4445555*****************988765444444 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.4     0.002         4      15      36 ..      29      50 ..      25     272 .. 0.87
   2 ?   -2.0   3.2       2.4   4.8e+03      35      97 ..     291     359 ..     282     384 .. 0.60
   3 ?  -13.3  15.6         9   1.8e+04      56      84 ..     697     750 ..     652     893 .. 0.61
   4 ?   13.5   0.1   3.8e-05     0.075      28     134 ..    1005    1114 ..     914    1117 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.002
                EEEESTTSSHHHHHHHHTTSS- CS
                xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 15 aivGenGaGKStLlkllagllk 36
                ai+G nG+GKS +l +++  l 
  CCD25982.2 29 AITGLNGSGKSNILDAICFVLG 50
                89**************986654 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 2.4
                 S--SEEEEEET.TCEGGG.B-HHHCCHCEEEE-SS..--S-TTSB.HHHH..HHHTCHHHHHHHSTTGGT CS
                 xxxxxxxxxxx.xxxxxx.xxxxxxxxxxxxxxxx..xxxxxxxx.xxxx..xxxxxxxxxxxxxxxxxx RF
    ABC_tran  35 lkpteGeilld.gkdlke.qeleslrkeigvlpqe..pqlfpelt.vren..esdeeiekalsklglkel 97 
                 +  ++G+i +  +k++k  +e+++++ +++++ q+  +   +el  +++n  e +    + +++++l+e 
  CCD25982.2 291 EVEKNGKISILeEKESKIlNEISRTKTSLSICIQDyeE-NIKELDkIKRNieENKTSSLQKMESFKLIEQ 359
                 44578999887466666688889999999999999743.3344433777765222223333444444443 PP

  == domain 3  score: -13.3 bits;  conditional E-value: 9
                 HCCHCEEEE-SS--S-TTSBHHHH.........................HHHTC CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.........................xxxxx RF
    ABC_tran  56 slrkeigvlpqepqlfpeltvren.........................esdee 84 
                 +l++ i  l+q++   ++++v +n                         +++ee
  CCD25982.2 697 ELNEVINSLKQQELNSQRTKVIQNdlnlarhklslaqrsigannasqiaKKNEE 750
                 444444444444333333334444444433333333333333334444422222 PP

  == domain 4  score: 13.5 bits;  conditional E-value: 3.8e-05
                  HHHHTTSS--SEEEEEETTCEGGG.......B-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHSTTGGTTCBGESTTSGGS- CS
                  xxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   28 lkllagllkpteGeilldgkdlke.......qeleslrkeigvlpqepqlfpeltvren.......esdeeiekalsklglkelkdtvvksspssLS 110 
                  ++++ +   + +++i     +l+e       +++e++   +g ++ +                      +e +++ + l+ k +  t++k+s  +LS
  CCD25982.2 1005 IRTIEKDKIKIQETI----SKLNEykrealiKTWEKVTTDFGAIFSD-----------LlpnsfakLVPSEGKDVTEGLEVKVKLGTIWKESLVELS 1086
                  333333333333333....1122211122333333333333333333...........02222233233445666666666667777887777**** PP

                  HHHHHHHHHHHHH....HHTSSEEEEES CS
                  xxxxxxxxxxxxx....xxxxxxxxxxx RF
    ABC_tran  111 gGqkqrvalaral....lkkpkllllDE 134 
                  gGq++ +al  ++    ++ +++++lDE
  CCD25982.2 1087 GGQRSLIALSLIMallqFRPAPMYILDE 1114
                  *****988754431122578899****9 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2  53.5   2.4e-05     0.048       2     199 ..       6     312 ..       5     503 .. 0.66
   2 ?    5.0   2.4     0.015        30     109     195 ..     610     725 ..     545     734 .. 0.54
   3 ?   -2.7  20.6       3.5     7e+03     122     194 ..     742     838 ..     716     844 .. 0.57
   4 ?  -15.1  31.2         9   1.8e+04      68     169 ..     883     941 ..     837    1039 .. 0.43

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.4e-05
      AAA_23   2 Lkienfrsf.rdqei.dFskgltlItGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgry............ 86 
                 L i +f+s+  ++ i d ++ +++ItG NG+GK+ ildAi+++L+  + ++ r   +++ +  ++ ++ g +ka+v++ f n+d+++            
  CCD25982.2   6 LIIDGFKSYaTRTVIsDWDPQFNAITGLNGSGKSNILDAICFVLGITSMTTVR--ASNLQDLIYKRGQAGITKASVTIVFDNTDKTNspigfnnsakis 102
                 89*******545557799**************************987655555..44455555555555666666777777766666666666655555 PP

      AAA_23  87 ....................................................................trsiererelskkkgkttkkaklelleidel 117
                                                                                     t+ +e++re+++  + ++             
  CCD25982.2 103 vtrqvvlggtskylinghrapqqsvlqlfqsvqlninnpnflimqgkitkvlnmkpkeilslieeaagTKMFEDRREKAERTMAKK------------- 188
                 77777777777777777777777777777777777777777777777777776666666666665555333333333333222221............. PP

      AAA_23 118 eqfisellgskkiilnlilflgqerfeefelkdkke.......................................................rleeleke 161
                                                    e                                                       r ++++++
  CCD25982.2 189 -----------------------------------EtklqenrtllqeeiepkleklrnekriflefqvtqadyekiskvifafdyknltrRYDSFQNS 252
                 ...................................1222222222222222222222222222222222222233333333333333333344444444 PP

      AAA_23 162 leeledekkllekl......................eqekekek.eleeleeeleeilkel 199
                 l+ +++++++l++l                      ++e ek + +++ lee+  +il+e+
  CCD25982.2 253 LNSNKARAEELNTLipklsneleslnddlgqirsakQEEVEK-NgKISILEEKESKILNEI 312
                 444444444443333333322222222244444432111111.123333333333333333 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.015
      AAA_23 109 lelleideleqfise.........llgskkiilnlilflgqer................feefelkdkke............rleelekeleeledekk 170
                 l+l++    ++++s+         l++++ +  + + f++q r                          +             ++ ++++ ++l+ ++k
  CCD25982.2 610 LNLIGY---DDEVSNamefifggsLICQDADTAKKVTFHPQIRtrsitlegdvydpegtL---------SggsrnnssslllDIQRYNESSQKLQSTEK 696
                 333333...223333333466666677777788888888888854444444444444440.........044444444444433333333333333333 PP

      AAA_23 171 llekl....eqekekekeleeleeeleei 195
                 +l+++    +q++ + ++ + ++++l+ +
  CCD25982.2 697 ELNEVinslKQQELNSQRTKVIQNDLNLA 725
                 33333222244444555666667766654 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.5
      AAA_23 122 sellgskkiilnlilflgqerfeefelkdkke...................rleelekeleeledekkllekl.....eqekekekeleeleeelee 194
                 s++ +++++  + i+ ++q+  ++++l+++++                   +l+el+ e+++l++ ++++ek      e+ ++ + e+e+l++e+++
  CCD25982.2 742 SQIAKKNEELHHEISECQQGIIDNQRLMKTLQedverikrdmdefshdrgsKLNELKLEINDLTESINKQEKIseheyEKYQNLQVEIEQLNSEIKS 838
                 3322222333344555555554444444444444555555555555888889999999999999999999987554444444445566666666665 PP

  == domain 4  score: -15.1 bits;  conditional E-value: 9
      AAA_23  68 e.........gkvkayveltfenkdgry..trsiererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqerfeefelkdkkerl 155
                 +         ++ ++ ++l++e k+g +  ++++  + ++sk ++++++k+++el+++                                         
  CCD25982.2 883 NrllgldeelKELENLIKLKIEAKNGYEleYQKLAHDLSKSKANTDSIQKKIEELIKE----------------------------------------- 940
                 0222222222222333333333333321222222223344444444444444444433......................................... PP

      AAA_23 156 eelekeleeledek 169
                               
  CCD25982.2 941 -------------H 941
                 .............2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2573  (0.143511); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.89u 0.34s 00:00:02.23 Elapsed: 00:00:00.61
# Mc/sec: 5827.33
//
Query:       CCD25983.2  [L=1060]
Description: hypothetical protein NDAI_0G02080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.8e-64  215.1   0.0    1.6e-63  214.3   0.0    1.4  1  FAD_binding_1   FAD binding domain
    2.2e-07   31.5   0.8    4.2e-07   30.6   0.0    1.9  2  NAD_binding_1   Oxidoreductase NAD-binding domain
  ------ inclusion threshold ------
      0.052   13.4   0.1        1.4    8.9   0.1    2.4  2  Imm52           Immunity protein 52
        0.2   10.4   5.5       0.33    9.7   5.5    1.2  1  Tim54           Inner membrane protein import complex subunit
       0.24   11.8   2.8       0.74   10.2   2.8    1.7  1  CENP-B_dimeris  Centromere protein B dimerisation domain
       0.71    9.9   2.8         17    5.5   0.1    2.9  2  PDZ_1           PDZ-like domain


Domain annotation for each model (and alignments):
>> FAD_binding_1  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.3   0.0   5.2e-67   1.6e-63       3     222 .]     669     881 ..     667     881 .. 0.98

  Alignments for each domain:
  == domain 1  score: 214.3 bits;  conditional E-value: 5.2e-67
                    -BTTB-EEEEEEEEEE---.-SS--EEEEEEE-TTB.T----TT-EEEE-----HHHHHHHHHHHT--T..T-EEEEEESSTT..S--SSSSSEEH CS
  FAD_binding_1   3 fdakkvflakvlknreLtkpesernvihveldisds.glkYetGdhlgvypsNneelVeellellgldpkadevvelkaldeesaekeprleptTl 97 
                    +   k+f++kv++n+++t+ +++r+++ + +dis++ +lkY++G++lg++++Nn+++V+e+l++++l    +e++ ++++d     +++ le +T 
     CCD25983.2 669 DLPIKNFIVKVKSNKRVTPEDYDRYIFEINFDISNTpDLKYDIGEALGIHAENNSQDVQEFLQFYNLSG--NEIIMVPNKD-----NNKILEARTS 757
                    556799***************************************************************..**********.....79******** PP

                    HHHHHHTB--SS---HHHHHHHGGG-SSHHHHHHHHHHHH-HHHHHTTTTT--HHHHHHHHHTT---TTS-HHHHHHHS-B---EEEEB-S-TTTT CS
  FAD_binding_1  98 rqalkyylditgppskqlleaLaefaseeeekqkLekLssdegakeykelklneartllevleefpsvklplefLlevlpqLkpRyYSiSssskvh 193
                    +qa+k++ld++g+p k+++e+L+ +a++ee k kL+ L+s++ga ++k+ + +e +t++++l+ +ps k++l+ L + ++ Lk+R+YSi+ss++vh
     CCD25983.2 758 FQAFKENLDLFGKPPKRFYESLIDYAEDEEDKTKLQELISPAGAVDLKRYQDVEFYTYVDILKLYPSCKPSLSDLTTLIAPLKRREYSIASSQRVH 853
                    ************************************************************************************************ PP

                    TTEEEEEEE--EE---SSS--EE-HHHHH CS
  FAD_binding_1 194 pdevhltvvVveyetdgegrirkGvcsny 222
                    p+e+hl++vVv++  d++gr+r G++s++
     CCD25983.2 854 PTEIHLLIVVVDWV-DNQGRKRFGQASKF 881
                    **************.7***********97 PP

>> NAD_binding_1  Oxidoreductase NAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   1.0         6   1.8e+04      51      59 ..     597     605 ..     575     621 .. 0.43
   2 !   30.6   0.0   1.4e-10   4.2e-07       5     100 ..     916    1014 ..     912    1021 .. 0.79

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 6
                    HHCTTEEEE CS
  NAD_binding_1  51 kklpgrlkv 59 
                    ++++++ + 
     CCD25983.2 597 QEQEQEKEK 605
                    111111111 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 1.4e-10
                     GGGGHHHHHHHHHHHHHCT...TCSEEEEEEEESSGC.GSTTHHHHHHHHHHCTT.EEEEEEEESSCTTTSSSEESSHHHHHHHHHHH....HS CS
  NAD_binding_1    5 GtGiaPvrsvlraileeak...dktkvvlvyGnrtee.dllyreeleelakklpg.rlkvvavvsreeagweggkgrvqdalleells....lk 89  
                     GtG+aP+++++++ l +++     ++v+l+ G r+++ + l+ e +e++  k  g   ++ a+ sr++ +    k ++qd+++e+l +    + 
     CCD25983.2  916 GTGLAPFKAIVEEKLWQKQhgmEIGEVYLYMGSRHRReEYLFGELWEAY--KDAGiITHIGAAFSRDQPE----KIYIQDRIRENLSDlktaMI 1003
                     ***********99998855688889**********99677777777777..3333123344446666666....6*******999999999977 PP

                     STTEEEEEECS CS
  NAD_binding_1   90 keethvyvCGp 100 
                     +++  +y+CGp
     CCD25983.2 1004 DKNGSFYLCGP 1014
                     9*********9 PP

>> Imm52  Immunity protein 52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.1   0.00046       1.4      57      76 ..     464     484 ..     450     489 .. 0.80
   2 ?    1.6   0.0     0.083   2.5e+02      67      96 ..     969     998 ..     961    1000 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00046
                 EEEET.EEEEEEEES-SS--- CS
       Imm52  57 eveak.kqkGtlivstdekfs 76 
                 +v +  kq+Gtli++t+e+f+
  CCD25983.2 464 NVLNTlKQNGTLIINTKENFE 484
                 4555569*************7 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.083
                 EEES-SS---TT-HHHHHHHHHHHHHHHHT CS
       Imm52  67 livstdekfsvenpeHvalandieirLadl 96 
                 +i+   + fs ++pe + +  +i++ L+dl
  CCD25983.2 969 IITHIGAAFSRDQPEKIYIQDRIRENLSDL 998
                 7778999********************997 PP

>> Tim54  Inner membrane protein import complex subunit Tim54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.5   0.00011      0.33     213     278 ..     583     650 ..     560     667 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00011
       Tim54 213 eeeeeeeeeeeeekeeekeeekeeeeeeeekekkkkvpkpyispedY..asaelppeiPellqpvlvi 278
                 ++e + e+e++e+++e+++e++++e+eeee+++++ +++++++++++  ++++lp+e+ + +++++ i
  CCD25983.2 583 QTELDIENEKKEQEQEQEQEKEKTEQEEEEQQEEEIILPSFVNETSFvpNTSTLPKETTTNISNSTEI 650
                 22222223344444445555555556666666688888889999999555778899977777655544 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   2.8   0.00025      0.74      11      50 ..     587     627 ..     579     638 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00025
  CENP-B_dimeris  11 dsesesdeeeee.eeedeededeeddedddevpvpsfgeam 50 
                     d e e  e+e+e e+e e+ e+ee++++++e+ +psf +  
      CCD25983.2 587 DIENEKKEQEQEqEQEKEKTEQEEEEQQEEEIILPSFVNET 627
                     5566666655540455556677777778899******8765 PP

>> PDZ_1  PDZ-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0058        17      32      74 ..     142     183 ..     134     184 .. 0.87
   2 ?    3.4   0.3     0.027        80      37      68 ..     426     457 ..     419     466 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0058
       PDZ_1  32 gvyvseasgsfklsskekkgviitsinnqptpnLdefievvkk 74 
                 g ++++ s s++++s + + +++t i n +++nL+ +  v++k
  CCD25983.2 142 GSIINDYSTSLNFAS-SLNYNVLTPISNNEVSNLTSLSVVLSK 183
                 7788888999***99.99999**************99988875 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.027
       PDZ_1  37 easgsfklsskekkgviitsinnqptpnLdef 68 
                 +a++s + +++ ++g+ii++i+  +++ ++++
  CCD25983.2 426 QAQLSINNNNNNRNGNIISNIDTAEISIVEDV 457
                 57788888899************999877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1060 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2683  (0.149646); expected 358.6 (0.02)
Passed bias filter:                     1072  (0.0597914); expected 358.6 (0.02)
Passed Vit filter:                       192  (0.0107089); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.10u 0.36s 00:00:01.46 Elapsed: 00:00:00.48
# Mc/sec: 6646.28
//
Query:       CCD25984.2  [L=204]
Description: hypothetical protein NDAI_0G02090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1508.03
//
Query:       CCD25985.2  [L=728]
Description: hypothetical protein NDAI_0G02100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.1e-33  115.1   1.5    1.3e-32  113.5   1.5    1.9  1  EST1_DNA_bind  Est1 DNA/RNA binding domain
    8.7e-12   45.8   0.4    8.7e-12   45.8   0.4    2.0  2  EST1           Telomerase activating protein Est1


Domain annotation for each model (and alignments):
>> EST1_DNA_bind  Est1 DNA/RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.5   1.5   1.4e-36   1.3e-32       1     281 [.     206     498 ..     206     499 .. 0.89

  Alignments for each domain:
  == domain 1  score: 113.5 bits;  conditional E-value: 1.4e-36
                    HHHHHHHHHHH-TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHHHBSB--.TTHHHHHHHHHT-TT-HHHHH.HHHHHHHHTT...---HHHHHHHH CS
  EST1_DNA_bind   1 AlrYYllAaellPsnGepyNQlgviaiysedkldavYyylRSllssnpf.ptAkeNLellfekirkklekg.enkqskeskq...ektpeellkrl 91 
                    ++rY +lA+ +lP++G++y   + i+i+ ed  +a++  +R +l++ p  + + e L ++++ +     +  +n ++ke ++   e +p  + k++
     CCD25985.2 206 SIRYLELASLVLPAIGNTYYFKAKIHIQCEDFANAIFEIMRGSLVRLPEyDESFELLRRIMCPNKDNDIHLiLNQKLKELHKqdvEINPDMDSKII 301
                    689**********************************************9***********9886554443033334444335888********** PP

                    HHTTHHHHHHHHSTTTT.......TSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHH-S--SXXXXXXXXX....XXXXHHHHH CS
  EST1_DNA_bind  92 iilFlrlhgklftgtsf.....kdelerevlkklqillseslkernlkdaslllkmllinifaie.nlkdkssgeeskektll....llrlalrfi 177
                    +++F+ l+g +ft   +     + +++ e+ + l++ + e+lk+  + + ++++k+++i i+ ++ ++++k++ +   ++ ++    +   +l+f+
     CCD25985.2 302 ESYFITLFGTYFTTIMWgstiqNTDTQIEMAQALKVIFYERLKTNFVDNMDIVFKQVVIVIGGMHlMANEKGNSSALVKELNKiklsNYIIYLEFV 397
                    *****************9876449999999**************9999*****************87777777777666655588776667***** PP

                    HHHHHHHHHHTGGGTTT.....-SS-THHHHHHHHHHHHHTT-HHHHHHHHT-HHHHHHHHHHHHHHHH----------------SS--HHHHHTT CS
  EST1_DNA_bind 178 felfglllekvetlealkrdketpsatrvLpalrvylswlksnkslledvekdeklvsslsdllnellssellnksfdvekdpkrdylleEDielk 273
                    f+ ++ ++ ++    +l    +  ++ ++L+ +rv+l+w+ksn+ +l + ++++ +++ + +l n + +s+++     ++ +p+rd+++ EDi lk
     CCD25985.2 398 FDWITNITHNIIIPFWL---INIENNHQYLAIIRVVLCWVKSNRGILHYSHRHDGFCQVIANLINGMIKSDSFALEAVSSRRPRRDHFFHEDIILK 490
                    **999999999999999...45556679******************************************99999999****************** PP

                    TBGGGTTS CS
  EST1_DNA_bind 274 gFsplkea 281
                    +Fs+++++
     CCD25985.2 491 EFSCVNFS 498
                    ****9875 PP

>> EST1  Telomerase activating protein Est1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.4   9.7e-16   8.7e-12       3     130 ..      68     185 ..      67     191 .. 0.80
   2 ?   -2.7   0.4      0.93   8.4e+03      44      54 ..     600     610 ..     563     700 .. 0.64

  Alignments for each domain:
  == domain 1  score: 45.8 bits;  conditional E-value: 9.7e-16
                 HHHHHHHTHHHHHHHHHHHHHHHH-------H.HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-B-....HTT............-.....-----.- CS
        EST1   3 eellWrkvyyevikllkkqlknldsapkkkkkpvekrklklklvkflksaigfYqsliqrllsefel....elssvlkvilksktklpekessekse.t 96 
                 +++lWr++  +v+++++++  +l  ++  ++k +++ k+k+ l k +k  +++Y+ l++ +++++++           ++  + t+          + +
  CCD25985.2  68 LDQLWRDIIIPVFDWFQNWKDALIINS--NQKCNSFWKMKRVLIKTFKLIHKIYYGLLELFIKKYDTafviP---NGIITRLNLTS---------YNdD 152
                 589*******************99654..66667********************************744320...22222222222.........3336 PP

                 ---TTB--TTSHHH.HHHHHHHHHHHHHHHHHHH CS
        EST1  97 eseeeksslssseqksavlklvhrcLiyLGDlaR 130
                 ++++++++ sss +   ++k++h cL yLG ++ 
  CCD25985.2 153 KENKYQLHPSSSFT-VLIMKTFHCCLNYLGLVHF 185
                 667899********.***************8885 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.93
                 HHHHHHHHHHH CS
        EST1  44 klvkflksaig 54 
                  l kflk++++
  CCD25985.2 600 LLDKFLKEESE 610
                 44555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4949.20
//
Query:       CCD25986.2  [L=656]
Description: hypothetical protein NDAI_0G02110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.9e-100  335.2   0.0   9.2e-100  334.5   0.0    1.3  1  Topoisom_bac  DNA topoisomerase
    4.6e-21   75.0   0.0    1.3e-20   73.5   0.0    1.8  1  Toprim        Toprim domain


Domain annotation for each model (and alignments):
>> Topoisom_bac  DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.5   0.0    1e-103  9.2e-100       5     412 ..     173     623 ..     169     624 .. 0.90

  Alignments for each domain:
  == domain 1  score: 334.5 bits;  conditional E-value: 1e-103
  Topoisom_bac   5 nlvdaaeaRrelDwliGinlsrlltkklk........................g.kkvlsaGRVqtptLaliveRereienFvpeeyweveatlkke 76 
                   + vda+ aR elD++ G++++rllt+++k                        +   ++s+G +q ptL+++v+R++ i++Fv+ee+w +++ +k+ 
    CCD25986.2 173 KSVDAVGARIELDLRTGVTFTRLLTNTMKakvetwnrsqtsissngnmssrakEpPTIISYGACQFPTLGFVVDRYERIKHFVSEEFWYIQLVIKDP 269
                   689***********************444457799999999999999998875368999********************************999877 PP

  Topoisom_bac  77 kkekekkkkkkkerikdkeeaeaileklkk..k.eakvesvekkekkkppplpfdtttLqkeasrklglsakktlsiaqkLYekaglitYpRTdstr 170
                   ++ ++  +++++++++d+  + a++e++ +  + +akv+++ +k ++k++plp++t++Lq+ ++r l+l+akk l +a+kLY+k g+++YpRT+++ 
    CCD25986.2 270 ESGASTTFQWDRGHLFDRLSVLAFYETCLEtaGdKAKVVDLISKPTSKYRPLPLTTVELQRNCARFLRLNAKKSLAAAEKLYQK-GFVSYPRTETDI 365
                   7777799*********************9987479************************************************8.************ PP

  Topoisom_bac 171 lseeaelkailealakkygk....eylefaekllkktkkks......vvknkkveaHeAIrPteelpklkelsddekklYelIvrrflaslmkdaky 257
                   +++  +l++++++ a+  ++     ++++ae ll++ ++++        +  +++aH++I+P+ ++  + +l+ dek++Ye+Ivr+fla++++dak 
    CCD25986.2 366 FPQAMDLQSLVRNRAQLDQSnnrtAWASYAEGLLSDDASNTnkfrfpRSGTHDDKAHPPIHPVVSVGPNANLTPDEKRVYEYIVRHFLACCSEDAKG 462
                   ****667777766555333344558888888888776655566675534444559********9999779*************************** PP

  Topoisom_bac 258 eettvkleveeeefkasgktilekGfkkvykeekkeeeeeelpelkegeevkvkeveleekkTkppkryteasLikamekagiGtpaTraeiieklv 354
                   ++tt++l+ ++e+f asg ++le++f+ vy+ +k+e++ ++lp+l+ ++e++++++e++ + T+ppk++te++Li +m+ +giGt+aT+a++iek++
    CCD25986.2 463 QSTTLTLDWADERFVASGLIVLERNFLDVYPWAKWETT-KRLPRLEINQECEIGKAEMNFGHTSPPKPMTESELIMLMDANGIGTDATIADHIEKIQ 558
                   ******************************99999987.59******************************************************** PP

  Topoisom_bac 355 ergYverk...k.kslvptelGkalvellekf...kdlvspelTaeleekLdeIaegkadakevl 412
                   +r+Y++++   k + ++pt lG+alv+++e +   +++++p  ++e+ee+L++I +g+++++ev+
    CCD25986.2 559 TRKYIKSEkvgKdTFFQPTVLGIALVHGFEAIgleDSFAKPFQRREMEEDLKKICQGQLTKNEVV 623
                   *******966655679*************98887555**************************98 PP

>> Toprim  Toprim domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   1.5e-24   1.3e-20       1     102 [.       3     154 ..       3     155 .. 0.89

  Alignments for each domain:
  == domain 1  score: 73.5 bits;  conditional E-value: 1.5e-24
                 EEEEESSHHHHHHHHHTHT..............................STEEEEEEESSSSEEEHS..........TTEEEEE.....ECTTTHHHHH CS
      Toprim   1 elvivEgpsdaktiakalg..............................sgfqavtaslGhildlet..........efkpvye.....eiedkkkvlk 54 
                 +l+++E++s ak+++++lg                              ++++++t++ Gh++++++          ++++ ++     e+++++k+++
  CCD25986.2   3 VLCVAEKNSIAKAVSQILGggscnsrdsgytyvknydfkfdgfpfvstnDCDVTMTSVAGHLTSVDFrpdiygwnkcRIDELFTaplstEMDNNQKKIA 101
                 69*****************************************************************99998888884444444777798888888887 PP

                 H.HHHHHHHHSEEEEECSSSHHHHHHHHHHHHHHT....HHHTTTEEEEEESS CS
      Toprim  55 a.lkelakradeiilatDpDreGeaiawellevlk....ellenkigrvefse 102
                 a +k++a+ ad ++++tD+DreGe i+we+++ +     +l++++++r+ fs+
  CCD25986.2 102 AnIKREARYADFLMIWTDCDREGEYIGWEIFQEALkgnsRLTNSQVYRANFSH 154
                 77*****************************88886776666669****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       593  (0.0330749); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.23s 00:00:00.86 Elapsed: 00:00:00.40
# Mc/sec: 4897.91
//
Query:       CCD25987.2  [L=605]
Description: hypothetical protein NDAI_0G02120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-71  240.5  38.8    3.8e-71  240.2  38.8    1.1  1  Transp_cyt_pur  Permease for cytosine/purines, uracil, thiami


Domain annotation for each model (and alignments):
>> Transp_cyt_pur  Permease for cytosine/purines, uracil, thiamine, allantoin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.2  38.8   2.1e-75   3.8e-71       4     422 ..      37     467 ..      34     483 .. 0.94

  Alignments for each domain:
  == domain 1  score: 240.2 bits;  conditional E-value: 2.1e-75
  Transp_cyt_pur   4 eeeRtwktlnlfsiWlganlnintwvigalglalgLnwwqsvlviivgnligaifvallglaGakyGlpfpilsRasfGirgsllplllrvviai 98 
                       + tw+ +  f+ W  ++ ++ tw+ ++++l++gL++++++ + i+g ++  if+  +++ G    + f ++ R++fGi+gs +++l+r+++ i
      CCD25987.2  37 SRNQTWGFWSNFAYWGVMSWSVGTWMSASSALSVGLSYGETIGTFIIGDVLTIIFTLANSYPGYDWKVGFTLSQRFVFGIYGSGFGILIRILMSI 131
                     5678******************************************************************************************* PP

  Transp_cyt_pur  99 vwfgvqawiGsealllmlgkifgkwleigg...ailgtsltelvtffifwvvslvivllgvskirkffviaallvpvaafgfliwalvkaeg.Gp 189
                     v ++++aw+G+ +++++l++   + l++++   +++++++ el++f+if ++++   l+ + + + +     +++ +a +g+ i++ ++ +g G+
      CCD25987.2 132 VNYASNAWLGGLCVNMILDSWSHHYLHLPNtltQKVAMTTKELIGFIIFHIITMFCYLMKPYQANYLMISSCVATCFAMMGMVIYLTKENGGvGD 226
                     **************9999888655******99999******************9999999999887777777777778899*******99999** PP

  Transp_cyt_pur 190 vldkavklg.kse....lflsavagvlagfatlilnapDFtryaktkkssvkiqlvavpllftlllligilvaaaakaayganawspldilakfd 279
                     ++    + +        + +  v  + ++ ++  +n +DF+r+++++++  ++ ++a+ +  tl+ ++g+++a+ +  +yg++ w+p+di   ++
      CCD25987.2 227 LFVSTKSTAkG-SdkawAWVYMVSYWFGSVSPGSTNQSDFSRFGSSQTAIWLGTIMALLIPTTLTPVFGVIGASTTEQLYGTQLWQPMDICDYWL 320
                     99966555544.359976777889999******************************************************************** PP

  Transp_cyt_pur 280 et.......agvllililvalaqlgvnisanllsagldlaallPkkinikrgsliaavialvivpwkllssssklftaflsllavflspvagvii 367
                              a++++  + + ++q++ +is++  ++g+dla +lPk+i ikrg++++a+++++  pw+ ++sss+ f++ +s ++++++p++ v+i
      CCD25987.2 321 RQnyhpgarAASFFCGLAFVSSQISYTISNAGFASGMDLAGVLPKYIDIKRGAIFTALVSVALQPWNFYNSSST-FLTVMSSFGIVMTPIISVMI 414
                     999***********************************************************************.******************** PP

  Transp_cyt_pur 368 adyfvvrrgylklaalytrrrgsaYwyrkgvNwravaayivGiaaglvgvagsvg 422
                      d +v+r++++++ + +     + Y+++kg+Nwra++a++vG+ +gl+g+a +v 
      CCD25987.2 415 CDNLVIRKRQYSVSQAFV--IHGEYYFNKGFNWRAFVAWVVGMTPGLPGIAWQVN 467
                     *****************9..9****************************998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       762  (0.042501); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4524.90
//
Query:       CCD25988.2  [L=380]
Description: hypothetical protein NDAI_0G02130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-66  224.4   8.0      2e-66  224.2   8.0    1.0  1  Rogdi_lz  Rogdi leucine zipper containing protein


Domain annotation for each model (and alignments):
>> Rogdi_lz  Rogdi leucine zipper containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.2   8.0   1.1e-70     2e-66       1     267 [.      26     370 ..      26     371 .. 0.88

  Alignments for each domain:
  == domain 1  score: 224.2 bits;  conditional E-value: 1.1e-70
    Rogdi_lz   1 EleWLlkeelketlpqlkegLeeClallapedpgstLvlS.....................................ssrsesvKGvvtRvGtrivkgd 62 
                 E +WL++e++k++lp++++++e+Cla+l++++  +++++S                                     s++ +s++G++tR G +i++++
  CCD25988.2  26 ERHWLINEIIKPELPNIIDNVEKCLAMLNSDQ-IFKMPISntsanatattnknmstitrtvqndsstssssssaastSNNCPSIRGIITRRGGYILDFQ 123
                 89****************************99.*******************************************999******************** PP

    Rogdi_lz  63 islrlrtlpk...ltlklnptkpivleqLtdlrtlltqaldlLdltlktgdelsksaqflssqLrllleslseAkalLkgppepelafpang...wtte 155
                 +++++++++k   +++++n++k+++l q++ ++++++++l+lL+  l+  d+      ++++++ ++l+ l+++++lL++ppe +l+fp+n+   + +e
  CCD25988.2 124 AMVKFNEFKKgkqILFRMNTGKNYPLLQIKRIHENMEHILQLLE-DLQLIDD----ILEFIKKFGTVLNLLNDSTDLLTNPPE-QLIFPYNNnemM-KE 215
                 ********************************************.3332233....568************************.9*****886532.23 PP

    Rogdi_lz 156 saa..shfePplppnlsldlyiqeaelvldlrvLepvtakpwsei..st..sfgdkladal........gtarrlehdeaeevfk.............. 226
                   +  + +++++++++sl+l+++++e+++d+r+Le+vt+kpw+ei  +t  s++dk++d+l        +++ + ++ ++e+++               
  CCD25988.2 216 MFQdsHLISQSTHHEISLELVLFKNEISIDFRNLEKVTKKPWCEIdpQTgkSLTDKVKDELksnrsknlTDILKSNGVQLEQPSLlnnlmmstfntett 314
                 333355556889*********************************975589**********77777776666666666666666688887777777666 PP

    Rogdi_lz 227 .....kg..........eeVmvrekvrVesaDPsLislsakLgalehllaqarrnL 267
                      ++          ++Vm+ ek+ ++++DP+Lis+sakL+ale +++++++nL
  CCD25988.2 315 tlqqaQKylsrcvtfdnKVVMELEKIAITTSDPTLISISAKLTALEGSISNHYTNL 370
                 66555005666666666**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1480  (0.0825478); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 2846.39
//
Query:       CCD25989.2  [L=553]
Description: hypothetical protein NDAI_0G02140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-17   64.2   0.6    7.6e-17   61.4   0.2    2.7  2  FHA              FHA domain
      2e-06   28.0   0.0      1e-05   25.8   0.0    2.2  1  Yop-YscD_cpl     Inner membrane component of T3SS, cytoplasmi
  ------ inclusion threshold ------
       0.23   11.5   1.5        1.1    9.3   1.5    2.2  1  IKKbetaNEMObind  I-kappa-kinase-beta NEMO binding domain
        8.7    6.0  12.2         11    5.8   1.2    3.2  2  EMC3_TMCO1       Integral membrane protein EMC3/TMCO1-like


Domain annotation for each model (and alignments):
>> FHA  FHA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.78   3.5e+03      33      50 ..      89     106 ..      64     119 .. 0.67
   2 !   61.4   0.2   1.7e-20   7.6e-17      13      69 .]     179     235 ..     162     235 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.78
                 EEEEEEESSSSSEEETTE CS
         FHA  33 kvyleDlgSknGtfvNgq 50 
                    ++ l+S n tf  + 
  CCD25989.2  89 YTKIMVLKSLNSTFDTKY 106
                 445666889999985555 PP

  == domain 2  score: 61.4 bits;  conditional E-value: 1.7e-20
                 TTSTTSTTTEEEEEEETTCEEEEEEEESSSSSEEETTEEESTTSEEEE-TTEEEEET CS
         FHA  13 lddpsiSrkHalikfdkgsgkvyleDlgSknGtfvNgqrigkgepveLksgdvielG 69 
                 +d++++Sr+Hal+++++++g++y++Dl+S+nGtfvNg+r++ +++ eL+ gdv++lG
  CCD25989.2 179 FDSRVLSRNHALLSCNPTNGSIYIKDLKSSNGTFVNGERLTDSQDKELNIGDVLDLG 235
                 45788**************************************************98 PP

>> Yop-YscD_cpl  Inner membrane component of T3SS, cytoplasmic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.3e-09     1e-05      35      83 ..     183     236 ..     179     242 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2.3e-09
                   TS-TT-EEEEEE..TTEEEEEE-CESS--EETTEE-SECC...--TTSEEEETT CS
  Yop-YscD_cpl  35 evsrkhlkLeve..eesvrledlgsrngllvngerveele...lrpgdvlelGt 83 
                    +sr+h+ L+++  + s+ ++dl+s ng++vnger ++++   l+ gdvl lGt
    CCD25989.2 183 VLSRNHALLSCNptNGSIYIKDLKSSNGTFVNGERLTDSQdkeLNIGDVLDLGT 236
                   579********977889********************555578**********7 PP

>> IKKbetaNEMObind  I-kappa-kinase-beta NEMO binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.5   0.00025       1.1       2      30 ..     370     399 ..     369     400 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00025
  IKKbetaNEMObind   2 qLleE.nqnyLsqLtslmqettkeqdsSlm 30 
                       Ll+E n + Ls+L++ ++ +  +q++Slm
       CCD25989.2 370 KLLTErNDKHLSHLQNNLRQALTKQQESLM 399
                      577776999********************9 PP

>> EMC3_TMCO1  Integral membrane protein EMC3/TMCO1-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   1.2    0.0024        11      49      90 ..      18      59 ..       7      67 .. 0.90
   2 ?    1.9   3.9     0.037   1.7e+02      37      93 ..     357     421 ..     346     553 .] 0.66

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0024
  EMC3_TMCO1 49 krekelqkrarelqkngdklklkklekrqeelmedqsemmmd 90
                 ++ ++q++++ ++++++  +  +  ++q + ++++++mm+d
  CCD25989.2 18 HQSHNYQQQQKDYNSHDHSHSHSHHHSQQRQRQQNNKSMMKD 59
                56789***********************************97 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.037
  EMC3_TMCO1  37 llidkkkmekeqkrekelqkrarelqkngdklklkklekrqeelmed.qsem.........mmdqmk 93 
                 +l+d++  ++  k+ k l +r  +  ++ +++  ++l k+qe lm+d q+e+         m +q+k
  CCD25989.2 357 FLMDYS--NELDKLHKLLTERNDKHLSHLQNNLRQALTKQQESLMKDhQKELndiendqhaMEKQFK 421
                 555555..55555555555555444444444444444444444444313333555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2923  (0.163032); expected 358.6 (0.02)
Passed bias filter:                      454  (0.0253221); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 3546.84
//
Query:       CCD25990.2  [L=336]
Description: hypothetical protein NDAI_0G02150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-17   64.0   0.1    2.2e-17   63.2   0.1    1.4  1  BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family


Domain annotation for each model (and alignments):
>> BPL_LplA_LipB  Biotin/lipoate A/B protein ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1   1.2e-21   2.2e-17       3     129 ..     142     271 ..     140     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 63.2 bits;  conditional E-value: 1.2e-21
                    EEES-HHH.........HHH..GCGGG--TT-EEEEEEESS-B-B--B-TTSEEEEEEEEESS...-CCGTHHHHHHHHHHHHHHH.......... CS
  BPL_LplA_LipB   3 evikstnt.........llkeslnsselesgglvvvrrqtgGrnvwhspkgeltyslllspeqktfqnrvlelyvsllvlavlealg.....y.rd 83 
                    ++ik+t t         +      ++ ++  ++++v+ ++gG+ ++h+p++ ++y++l++   ktf + +++++vs+++ a++++l        r+
     CCD25990.2 142 KRIKKTITqeqvdrfenFQPTTTTEDVVQPLKPKFVQVERGGQITYHGPGQMVAYIILDL---KTFHKFPAKCLVSTIEKATMQTLYnvkdlHlRS 234
                    666666666655532222222233344567899***************************...899********************6554322555 PP

                    ..HHTT-TTEEEETTTEEEETTEEEEEEEEEEEETTS-EEEEEEEE CS
  BPL_LplA_LipB  84 skpgiegipvfikwpnDlyvngrKlaGiavtstrgktlhhivigvg 129
                    + ++++g++v          +++K+a+i+++++r+ t+h+++i+v+
     CCD25990.2 235 QLTQNTGVWVD---------EDDKIASIGIHVRRSITSHGVAINVN 271
                    99*********.........************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1122  (0.0625802); expected 358.6 (0.02)
Passed bias filter:                      734  (0.0409393); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.28s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2298.91
//
Query:       CCD25991.2  [L=913]
Description: hypothetical protein NDAI_0G02160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-74  249.4   2.6    2.6e-74  248.6   2.6    1.4  1  PI3Ka           Phosphoinositide 3-kinase family, accessory d
      2e-51  175.3   0.0    1.8e-32  113.2   0.0    2.5  2  PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
    4.2e-23   81.8   2.1    4.6e-23   81.7   0.4    2.0  3  PI3K_C2         Phosphoinositide 3-kinase C2


Domain annotation for each model (and alignments):
>> PI3Ka  Phosphoinositide 3-kinase family, accessory domain (PIK domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.6   2.6   4.4e-78   2.6e-74       2     183 ..     324     571 ..     323     573 .. 0.99

  Alignments for each domain:
  == domain 1  score: 248.6 bits;  conditional E-value: 4.4e-78
                 -S-SSCHHHHHHHHHCHS-TTS---HHHHHHHHHTHHHHCTSGGGHHHHHTTS-SSSHHHHHHHHHHHTTSHHTTHHHHTTTTSTTS--HHHHHHHHHH CS
       PI3Ka   2 dlkpdekerdeleaiiakdPltkltaeekeliwkfryylknnkkaltklLqsvkwseesevkealelldsWaeididdaLeLLdskfkdesvreyavkv 100
                 ++kp+ k+rd+l++ii+++P+tklta+ek++iwk+ryyl+nnkkaltklLqs+++ eese+ e+lel+dsWaeididda+eLL+skfk+ svr+yav++
  CCD25991.2 324 QVKPNAKKRDYLNKIINYPPGTKLTAHEKGSIWKYRYYLMNNKKALTKLLQSTNLAEESERGEVLELMDSWAEIDIDDAIELLGSKFKNLSVRSYAVNR 422
                 89************************************************************************************************* PP

                 HHHSHHHHHHHHHHHHHHHHGGS..................................................................SSSSSHHHHH CS
       PI3Ka 101 LekasdeelllYllQLVqalkye..................................................................pikdsalaef 133
                 L+ka d el+lYllQLVqa+++e                                                                  pi++s+laef
  CCD25991.2 423 LKKAADSELELYLLQLVQAVCFEnvtiftdktnseftivdmnatgsldattnsiknihpnqrtmqqqqhnikkslmkpikengtsleetPIVISPLAEF 521
                 *************************************************************************************************** PP

                 HHHHHHHSHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHCHHHHHHH CS
       PI3Ka 134 LlkralknkrlghfffWyLkseiedkevserfksllesylrklskslkel 183
                 L++ralkn+rlg+ff+WyLk+e++d+++ +++ ++++ +l+k +k+++++
  CCD25991.2 522 LIRRALKNRRLGNFFYWYLKAESQDNPYLNQILDSYWGRLSKEHKKILKD 571
                 ******************************************99998765 PP

>> PI3_PI4_kinase  Phosphatidylinositol 3- and 4-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0     6e-20   3.6e-16       2      74 ..     657     724 ..     656     735 .. 0.96
   2 !  113.2   0.0   2.9e-36   1.8e-32     124     250 .]     739     859 ..     725     859 .. 0.93

  Alignments for each domain:
  == domain 1  score: 59.7 bits;  conditional E-value: 6e-20
                     EEEEEECSSCHHHHHHHHHHHHHHHHHHHHTTTTCCCT-------EEESSSSEEEEE--TTEEEHHHHHHHHH CS
  PI3_PI4_kinase   2 sagiykvgddlrqdelivqvfklmdeelskennpkrrklalktysviplgrkcgiielvassetaaslldekl 74 
                     +a++ykvgddlrqd+l+vq+++lm+e+l++en +++    l++y+++++g+++g i+++++ +t+a +l++++
      CCD25991.2 657 YALMYKVGDDLRQDQLVVQIISLMNELLKNENVDLK----LTPYKILATGPQEGAIQFIPN-DTMADILSKYH 724
                     899********************************9....********************8.9*******998 PP

  == domain 2  score: 113.2 bits;  conditional E-value: 2.9e-36
                     HSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TT--TTTEEEETTTSEEEESSTTTCCTCSHCSSSS-.SSSSS.S-THHHHHHT..STTCCHHHH CS
  PI3_PI4_kinase 124 kspsaeewlearkqFvrslaklsvldyilgngDRhldNilvdktsgklihIDfGlilpdewkllpfpqekvPf.rltrelvlai..dpskdeglf 215
                     +++++++w   +++Fv+s+a+++v++yilg+gDRhldN+l+ + +g ++h DfG+il++++k +p      P+ +l +++v+a+   +s+ +++f
      CCD25991.2 739 QESGVQDWV--MDNFVKSCAGYCVITYILGVGDRHLDNLLI-TPEGYFFHADFGYILGQDPKPFP------PLmKLPPQIVEAFggAESSNYNKF 824
                     344557999..******************************.****************9999988......899**********999******** PP

                     HHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCSSCT CS
  PI3_PI4_kinase 216 resceealealrrdqnlltrllkkavkdglilwei 250
                     r++c+ a+++lrr+++l+++l++++ ++++++++i
      CCD25991.2 825 RSYCFVAYSILRRNAGLILNLFELMKMSNIPDIRI 859
                     *******************************9875 PP

>> PI3K_C2  Phosphoinositide 3-kinase C2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   0.4   7.8e-27   4.6e-23       3     139 ..      54     190 ..      52     191 .. 0.93
   2 ?   -3.5   0.0       1.5   8.7e+03      77      94 ..     357     374 ..     345     393 .. 0.67
   3 ?   -3.7   0.0       1.8     1e+04      46      67 ..     831     852 ..     830     855 .. 0.84

  Alignments for each domain:
  == domain 1  score: 81.7 bits;  conditional E-value: 7.8e-27
                 SEEEEEEEEE..CTTEESSEEE.E-S-SETT.TTTEEEEEEEEEEECCCS-TTEEEEEEEEEEEECTC.EEE-EEEEEEEESC-T.TSCCGGCEEEEEE CS
     PI3K_C2   3 eklyvevqly..hggkqlclpvqstklksfsfksikwnewltfpiqisdLPrsarLvitiwevkgkekseeveplgwvnlsLFdk.kgiLrqGkqkLkl 98 
                 ++++v++q+    ++++l+ p+  t++ +f+ +  kw+ wlt+piqi++L  s +L itiwe+ g ++    +p++++++++ d+ + +L++Gk++L +
  CCD25991.2  54 SDFIVSIQVIdqERDRNLTIPI-FTPYIPFK-HARKWDHWLTLPIQIKQLHVSNKLKITIWEYDGFKR----IPFFQLETYIYDSnDFQLKRGKESLMF 146
                 789******98899********.*******9.***********************************9....8************4557********** PP

                 .CCS-----SHH...SSSCHCCCCCCCHTTSSS-CCCCHTTTCC CS
     PI3K_C2  99 .wtsketdgsvet..edelnrlekllkkyergqvekvewldrlt 139
                  + +k++d +       e++ ++ +l+ky +g+++kv+wld++t
  CCD25991.2 147 kYVNKDDDYDLDEvhIIENDPIQCNLNKYYQGEIKKVDWLDKIT 190
                 99999999877665557999**********************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.5
                 EEEEESC-TTSCCGGCEE CS
     PI3K_C2  77 wvnlsLFdkkgiLrqGkq 94 
                 + +++L+++k+ L++  q
  CCD25991.2 357 KYRYYLMNNKKALTKLLQ 374
                 556677777777765444 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 1.8
                 ECCCS-TTEEEEEEEEEEEECT CS
     PI3K_C2  46 qisdLPrsarLvitiwevkgke 67 
                  +s L r+a L + ++e+ +++
  CCD25991.2 831 AYSILRRNAGLILNLFELMKMS 852
                 6888999*********998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       699  (0.0389871); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.47
# Mc/sec: 5832.80
//
Query:       CCD25992.2  [L=802]
Description: hypothetical protein NDAI_0G02170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-81  273.2  24.3    2.1e-81  273.2  24.3    1.7  2  RSN1_7TM  Calcium-dependent channel, 7TM region, putative pho
    1.4e-39  135.4   4.5    1.4e-39  135.4   4.5    2.3  2  RSN1_TM   Late exocytosis, associated with Golgi transport
    1.8e-33  116.2   0.0    2.8e-33  115.6   0.0    1.3  1  PHM7_cyt  Cytosolic domain of 10TM putative phosphate transpo


Domain annotation for each model (and alignments):
>> RSN1_7TM  Calcium-dependent channel, 7TM region, putative phosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   1.4       2.6   1.5e+04     201     211 ..     188     198 ..     180     212 .. 0.42
   2 !  273.2  24.3   3.5e-85   2.1e-81       3     273 ..     457     724 ..     455     725 .. 0.98

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 2.6
    RSN1_7TM 201 vllifvialiY 211
                 ++++f+   iY
  CCD25992.2 188 FTYLFTFLAIY 198
                 22222222222 PP

  == domain 2  score: 273.2 bits;  conditional E-value: 3.5e-85
    RSN1_7TM   3 livtlllvlliifwiipvafvgllsnletltkvlpflkkilelskkllsvvtgllPtlllslllallpiilrllsklqGalsrselelsvvskyfaFlv 101
                 + vt+++ +  if+iipv+++++l nl +++k++p l+kil+ ++++ ++vtgllPt+l++l+++ +p+++++l++ qG +s se+e+s+vsk+f++++
  CCD25992.2 457 YSVTVFIGISSIFLIIPVSYLATLLNLRSISKFWPSLGKILKEHRWAENIVTGLLPTYLFTLMNVGIPYFYEYLTSRQGLVSYSEEEISLVSKNFFYIF 555
                 789************************************************************************************************ PP

    RSN1_7TM 102 vnvFlvftlagtalslleeiidnptsipkllaeslpkasnFfityillqglagaaleLlqlvklilflikrkflsktprdlaerytkppsfdygteypk 200
                 vn+Flvftlagta++++ ++ d +t+i+++la+s++++s F++++i+lqg+++++++Ll  ++li f + ++   ktpr++ e+y +pp f++g ++p+
  CCD25992.2 556 VNLFLVFTLAGTASNYWGYLSD-TTKIAYQLATSVKEMSLFYVDLIILQGIGMFPFKLLLAGSLIGFPLVKI-QAKTPRQRNELY-NPPIFNFGLQLPQ 651
                 **********************.******************************************9998875.55********99.************* PP

    RSN1_7TM 201 vllifvialiYsviaPlilpfaliyfllgylvykyqllyvydtkyesgGklwpralnrllvglvlfqllligl 273
                  +li++i+l Ysv+++++l+ +l+yf++g++vykyql+y++d+ ++s+Gk+wp +++r++vg++lfql++ g+
  CCD25992.2 652 PILILIITLLYSVMSTKLLVSSLVYFIIGFYVYKYQLIYATDHLPHSTGKVWPLIFRRVIVGILLFQLTMTGT 724
                 ***********************************************************************98 PP

>> RSN1_TM  Late exocytosis, associated with Golgi transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   4.5   2.3e-43   1.4e-39       2     155 ..      33     202 ..      32     203 .. 0.83
   2 ?   -2.3   0.8      0.56   3.3e+03     127     127 ..     495     495 ..     453     564 .. 0.55

  Alignments for each domain:
  == domain 1  score: 135.4 bits;  conditional E-value: 2.3e-43
     RSN1_TM   2 lltslvinlvlalvflllFlilRkknkrvYaprtylkgeeertpplpqkglfgWipallkisdeeilekaGLDayvflrflkmlikiflvlavlalivL 100
                 ++t+ +i+++l+l++ll+F++l kk++r+Ya+r+y+++ + + p++++++lfgW+++l++i+d+++le+aGLDa+vfl f+km+ik++++++v+a++++
  CCD25992.2  33 VTTQTAIATILGLFALLSFSMLLKKLPRLYASRKYKDDGSLNLPSWDETKLFGWLINLFQITDKHVLEYAGLDAFVFLCFFKMCIKLLATYCVFAILII 131
                 789********************************99999*********************************************************** PP

     RSN1_TM 101 lPvnat..ggegedskesk......sgl..dklsisnvsegsn............rlwahvvvayiftglvlyllyr 155
                 +P++++  g+ +++s++++      +++  ++l+is      +            +lw++v+++y+ft+l++y+l++
  CCD25992.2 132 SPIRYHftGQYDDGSDNNNsylgmtNSFvkRHLTIS------QdipieaperanlYLWMYVIFTYLFTFLAIYMLIS 202
                 ****76324444444444466666633422333333......1344444556778*******************985 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.56
     RSN1_TM 127 n 127
                 +
  CCD25992.2 495 K 495
                 1 PP

>> PHM7_cyt  Cytosolic domain of 10TM putative phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   0.0   4.7e-37   2.8e-33       1     176 []     223     444 ..     223     444 .. 0.91

  Alignments for each domain:
  == domain 1  score: 115.6 bits;  conditional E-value: 4.7e-37
    PHM7_cyt   1 srTvlvtgiPkelrseeklkeffeelypgkvvesvqivrdvkkldklveerekavrkle..aalsky.kkngkklpkkr.................... 76 
                 +rT++++giP elr++++lk+ +e+l++g+v +s++i+r+++ l++l + r++++++le  +a++ + ++n       r                    
  CCD25992.2 223 DRTIRLSGIPIELRDKQALKNRIEQLKIGTV-SSITICREWGPLNRLFHYRKNVLKELElkYAECPSsLRN-------Rnyesnveyyplgrnttdpsn 313
                 7*****************************8.************************988223444331333.......2233456899*********** PP

    PHM7_cyt  77 .............................................pthklgflglkligkkvdaidyyrekleeldeeieeerekvkkkplgaaFvtfe 130
                                                              pt ++g++g  l+g+k+daid+++++l+ +deei e+r+k+  ++++ aFvt++
  CCD25992.2 314 mapdsgttntntavtdrvianvpqggrerpeednvlysevrlgerPTIRTGLFG--LFGEKIDAIDHLEKQLKFIDEEIIEARKKH-FSATPTAFVTMD 409
                 *****************************************************9..789*************************98.89********** PP

    PHM7_cyt 131 sersaaavakqakcaaqiqqssnptlkpkkwtvelAPePrDviWeN 176
                 s   a+ +a         q+ ++p++  +++ ++lAP+P+D+ W+N
  CCD25992.2 410 SVANAQMAA---------QAVLDPRV--HYFITRLAPAPHDIKWDN 444
                 999998774.........77899*87..8****************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.33s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 5269.46
//
Query:       CCD25993.2  [L=294]
Description: hypothetical protein NDAI_0G02180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-66  224.0   9.5    2.3e-66  224.0   9.5    1.4  2  Arv1      Arv1-like family
  ------ inclusion threshold ------
      0.098   12.7   0.3       0.18   11.8   0.3    1.4  1  DZR       Double zinc ribbon


Domain annotation for each model (and alignments):
>> Arv1  Arv1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.0   9.5   2.6e-70   2.3e-66       1     210 []       2     228 ..       2     228 .. 0.93
   2 ?   -3.5   0.2       1.1   9.7e+03     162     166 ..     252     256 ..     231     278 .. 0.46

  Alignments for each domain:
  == domain 1  score: 224.0 bits;  conditional E-value: 2.6e-70
        Arv1   1 iCieCgepvksLytkYskgnirltkCknCkkvaDkYvEfdnvilfiDllLlkpqaYrHllfNtleree.........................ekfeki 74 
                 iCieCg+ v+sLyt Ys+++i+lt+C++C++++DkYvEfdnv++fiDllLlkp aYrHl+fN+le++                          +++ k+
  CCD25993.2   2 ICIECGAAVDSLYTVYSNKHIQLTECSQCHNIVDKYVEFDNVLMFIDLLLLKPGAYRHLVFNSLEERLskykeskplqgplrsrllilrnnirNWLLKF 100
                 8****************************************************************988******************************* PP

        Arv1  75 kslirlvillllfevyltwariekksesessslsaqaivlesakelkqylfflvlalletlvfhlsillllslesslsalllky...kkarlnalltal 170
                 + l+rl++lll+fe+yltw ++++ +  +++sl +++i++  +++l qy +f++++l++  +fh++i++++++       ++k+    k+ ++++++++
  CCD25993.2 101 DDLNRLWLLLLTFEIYLTWFTEDE-TPPHKRSLLMSRILT--ENALIQYAYFTLYCLIDISMFHYLIQYFIIS-------WCKWgtnVKNAKHVISYTI 189
                 **********************88.344555555555555..89*****************************.......566655578999******* PP

        Arv1 171 llssyaklfpilmlIWeydltalalslikllvllsnveal 210
                 lls+ ak+fpilmlIW+yd t+l++s+ik+++++++ve+l
  CCD25993.2 190 LLSYGAKIFPILMLIWPYD-TILSMSIIKWVANFYIVESL 228
                 *******************.888889***********997 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.1
        Arv1 162 rlnal 166
                 +++  
  CCD25993.2 252 TCTKP 256
                 22222 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3     2e-05      0.18      14      43 ..       2      39 ..       1      40 [. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 2e-05
         DZR 14 fCseCgtklkavaa........edrCpsCgekvdpear 43
                 C eCg+++++  +         + C++C+  vd+  +
  CCD25993.2  2 ICIECGAAVDSLYTvysnkhiqLTECSQCHNIVDKYVE 39
                6*******9987779999*************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 2260.96
//
Query:       CCD25994.2  [L=273]
Description: hypothetical protein NDAI_0G02190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-88  296.5   0.0    1.9e-88  296.3   0.0    1.0  1  ATP_bind_1       Conserved hypothetical ATP binding protein
     0.0015   18.4   0.0     0.0064   16.3   0.0    2.0  2  CLP1_P           mRNA cleavage and polyadenylation factor CLP
     0.0017   17.4   0.1     0.0028   16.7   0.0    1.4  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0028   17.6   0.2      0.068   13.1   0.0    2.3  2  RsgA_GTPase      RsgA GTPase
     0.0043   16.0   0.0     0.0069   15.4   0.0    1.3  1  AAA_10           AAA-like domain
     0.0076   16.3   0.0      0.021   14.9   0.0    1.9  1  MMR_HSR1         50S ribosome-binding GTPase
       0.01   15.4   0.0       0.26   10.8   0.0    2.4  2  GTP_EFTU         Elongation factor Tu GTP binding domain
  ------ inclusion threshold ------
      0.011   16.1   0.0      0.033   14.6   0.0    1.8  1  RNA_helicase     RNA helicase
      0.012   16.2   0.0       0.02   15.4   0.0    1.4  1  ABC_tran         ABC transporter
      0.012   15.7   0.0      0.027   14.5   0.0    1.6  1  DUF87            Helicase HerA, central domain
      0.012   16.1   0.0      0.029   14.9   0.0    1.8  1  AAA_18           AAA domain
      0.016   14.7   0.0      0.031   13.8   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
      0.024   13.9   0.0      0.044   13.0   0.0    1.3  1  KAP_NTPase       KAP family P-loop domain
      0.024   13.7   0.0      0.035   13.2   0.0    1.2  1  T2SSE            Type II/IV secretion system protein
      0.032   14.0   0.0       0.37   10.5   0.0    2.1  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
      0.037   13.7   0.0      0.064   13.0   0.0    1.4  1  AAA_24           AAA domain
       0.05   13.4   0.0      0.098   12.4   0.0    1.5  1  AAA_29           P-loop containing region of AAA domain
      0.055   13.8   0.0       0.13   12.5   0.0    1.6  1  AAA_22           AAA domain
      0.061   12.5   0.8       0.17   11.0   0.1    1.9  2  NB-ARC           NB-ARC domain
      0.062   13.0   0.0       0.11   12.2   0.0    1.3  1  AAA_30           AAA domain
      0.069   13.5   0.1       0.19   12.1   0.0    1.7  2  AAA_19           AAA domain
       0.08   13.3   0.0       0.14   12.5   0.0    1.5  1  AAA_16           AAA ATPase domain
        0.1   13.0   0.0        0.2   12.1   0.0    1.5  1  AAA              ATPase family associated with various cellul
        0.1   12.5   0.0        0.2   11.5   0.0    1.4  1  NACHT            NACHT domain
       0.12   11.9   0.0        1.7    8.2   0.0    2.2  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
       0.15   11.7   0.0       0.23   11.2   0.0    1.2  1  Sigma54_activat  Sigma-54 interaction domain
       0.16   11.9   0.0       0.31   11.1   0.0    1.5  1  AAA_5            AAA domain (dynein-related subfamily)
       0.18   11.1   0.0       0.33   10.2   0.0    1.4  1  AIG1             AIG1 family


Domain annotation for each model (and alignments):
>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.3   0.0     3e-91   1.9e-88       1     240 [.       8     253 ..       8     254 .. 0.98

  Alignments for each domain:
  == domain 1  score: 296.3 bits;  conditional E-value: 3e-91
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDPAaeelpYeaavdirelitledvmedlglgpngalvvaleflresldwldeelekeeddyllfDtP 99 
                 v+GpaG+GK+tf+++++++++++gr+ ++vNLDPAae  +Ye+++dir+li+l+dvme+l+lgpng+l++++e+l ++ldwldee+++++d++l+fD+P
  CCD25994.2   8 VLGPAGAGKSTFCNSIISHMQTIGRRAHIVNLDPAAEPNQYEFTIDIRDLISLDDVMEELDLGPNGGLIYCFEYLLKNLDWLDEEIGDYNDEFLIFDCP 106
                 89************************************************************************************************* PP

  ATP_bind_1 100 GQielfthseslakiveeLes..efalvvvyLvDsqrltdptkfisgllsalsamlrlelPhvvvlnkfDllkek.lekeleffedvealslllekee. 194
                 GQiel+th ++l +iv++L+   +f+l+++yL++++++ d++kf+sg+lsa+sam+ lelPh++vl+k+Dl+k++ ++k+l++f +++a+ l +e+ + 
  CCD25994.2 107 GQIELYTHIPVLPNIVRHLQGqlNFNLCATYLLEAPFVVDTSKFFSGALSAMSAMILLELPHINVLSKLDLIKDDyNKKRLKRFLNPDAMLLSTETIDk 205
                 ********************99***************************************************99**************9988887777 PP

  ATP_bind_1 195 ...ekykklaeaiaelleefalvlrflplssekeesiedllslidealq 240
                     ++++l+e+ia+l+++f++v +flpl+s++ +si ++ls+id+ +q
  CCD25994.2 206 emnPRFHHLNECIANLVDDFGMV-QFLPLESKNPDSIMTILSYIDDVTQ 253
                 889999*****************.*********************9987 PP

>> CLP1_P  mRNA cleavage and polyadenylation factor CLP1 P-loop
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     1e-05    0.0064       1      33 [.      10      42 ..      10      68 .. 0.85
   2 ?   -2.0   0.0       4.2   2.7e+03      96     115 ..      91     110 ..      76     126 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1e-05
      CLP1_P  1 GpkdsGKSTlarlLlNyalrkgrkpvyvDlDvG 33
                Gp  +GKST++  ++  +   gr+  +v+lD+ 
  CCD25994.2 10 GPAGAGKSTFCNSIISHMQTIGRRAHIVNLDPA 42
                8999***************************64 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 4.2
      CLP1_P  96 eenkkakasgliIntpGwvk 115
                 ee  ++++++li ++pG ++
  CCD25994.2  91 EEIGDYNDEFLIFDCPGQIE 110
                 55567889999999999887 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.4e-06    0.0028      34      69 ..       8      43 ..       1      47 [. 0.87
   2 ?   -4.0   0.0       8.9   5.7e+03     165     191 ..     163     189 ..     162     209 .. 0.69

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.4e-06
                EEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE---- CS
        MeaB 34 ltGvPGaGkstlvealglelrrrGkrvavlavDPss 69
                + G  GaGkst+ + ++ +++  G+r  ++ +DP++
  CCD25994.2  8 VLGPAGAGKSTFCNSIISHMQTIGRRAHIVNLDPAA 43
                46899*****************************86 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 8.9
                 CHHH-SEEEEE---HHHHHHHHHHHHH CS
        MeaB 165 ileiaDiivvnkaDkkeaekaarelra 191
                 +le+  i v+ k D+ + +  ++ l+ 
  CCD25994.2 163 LLELPHINVLSKLDLIKDDYNKKRLKR 189
                 578888888888886555555555544 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00011     0.068     103     124 ..       7      28 ..       2      36 .. 0.86
   2 ?    2.1   0.0      0.25   1.6e+02      49      77 ..     168     195 ..     156     223 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
                  EEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpele 124
                  +++G+ G+GKSt+ n+++++++
   CCD25994.2   7 LVLGPAGAGKSTFCNSIISHMQ 28 
                  678***************9865 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.25
                  EEEEEE-GGG--HHHHHHHHHHHHHHTTS CS
  RsgA_GTPase  49 pvivlnKiDlleeeeeleelkeelealgy 77 
                   + vl+K+Dl++++   ++  +++ + + 
   CCD25994.2 168 HINVLSKLDLIKDDY-NKKRLKRFLNPDA 195
                  45589******9999.5555555444443 PP

>> AAA_10  AAA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-05    0.0069      23      68 ..       5      52 ..       2      72 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.1e-05
      AAA_10 23 asliiGdlGnGKSvlakllvlyisllggkalii..Dpkkerekfketl 68
                ++l++G+ G+GKS + + ++  ++ +g +a i+  Dp +e +++  t+
  CCD25994.2  5 GVLVLGPAGAGKSTFCNSIISHMQTIGRRAHIVnlDPAAEPNQYEFTI 52
                5799***********************77655433****977765444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.3e-05     0.021       2      57 ..       6     109 ..       5     174 .. 0.63

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.3e-05
                 EEEEESTTSSHHHHHHHHHT......STEEESSSTTSSSSEEEEEEEETTEE...........................................EEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg......ekaivsdkpgtTrdinegrvklkgke...........................................ielv 51 
                 v+++G   +GKSt+ n+++       ++a++ +      ++n+++++++ ++                                           + + 
  CCD25994.2   6 VLVLGPAGAGKSTFCNSIIShmqtigRRAHIVNLDP-AAEPNQYEFTIDIRDlislddvmeeldlgpnggliycfeyllknldwldeeigdyndeFLIF 103
                 7899**************973332223333222222.23444444443322223333334444444444445555555555555555555555557777 PP

                 ECGGCS CS
    MMR_HSR1  52 DtpGli 57 
                 D+pG i
  CCD25994.2 104 DCPGQI 109
                 777754 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00041      0.26       6      59 ..       6      55 ..       2     114 .. 0.72
   2 ?    2.2   0.1      0.18   1.1e+02     117     142 ..     160     185 ..     154     253 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00041
                EEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCE CS
    GTP_EFTU  6 igiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksa 59
                + ++g   +GK+T++ +++ + ++i +++   +    lD ++e  +  +Ti++ 
  CCD25994.2  6 VLVLGPAGAGKSTFCNSIISHMQTIGRRAHIVN----LDPAAEPNQYEFTIDIR 55
                7899********************999655444....88888888888888775 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.18
                 HHHHTTTEEEEEEESCGSTHHHHHHH CS
    GTP_EFTU 117 lalkegvpiivfiNKmDrlkaelkei 142
                  ++ +++p i ++ K+D +k+++++ 
  CCD25994.2 160 AMILLELPHINVLSKLDLIKDDYNKK 185
                 56677889999999999995555432 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   5.1e-05     0.033       1      23 [.       6      28 ..       6      50 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 5.1e-05
  RNA_helicase  1 iwlyGpsgeGKStlakeLakall 23
                  +++ Gp+g GKSt++++++++++
    CCD25994.2  6 VLVLGPAGAGKSTFCNSIISHMQ 28
                  5789*************999987 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.0   3.1e-05      0.02      14      39 ..       6      31 ..       3      94 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 3.1e-05
                EEEEESTTSSHHHHHHHHTTSS--SE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpte 39
                v ++G+ GaGKSt+++ ++ +++   
  CCD25994.2  6 VLVLGPAGAGKSTFCNSIISHMQTIG 31
                5689***************9988754 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0   4.3e-05     0.027      26      63 ..       6      44 ..       5      70 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.3e-05
       DUF87 26 lAilgsTGsGKSntvavLleelle.kkgatililDpHGE 63
                +++lg +G+GKS++  ++++ +    ++a+i+ lDp  E
  CCD25994.2  6 VLVLGPAGAGKSTFCNSIISHMQTiGRRAHIVNLDPAAE 44
                579******************9999999*******9766 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   4.6e-05     0.029       1      42 [.       6      53 ..       6     115 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 4.6e-05
      AAA_18  1 IlltGtpGvGKttlakeLskrl.gf.....gvnlrdvakenglllevd 42
                +l+ G++G+GK+t+++ + +++  +      vnl   a  n+++++ d
  CCD25994.2  6 VLVLGPAGAGKSTFCNSIISHMqTIgrrahIVNLDPAAEPNQYEFTID 53
                799**************9777633466666455555555555544444 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   4.9e-05     0.031      34      82 ..       4      52 ..       1      55 [. 0.88

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 4.9e-05
       AAA_7 34 kpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdii 82
                  vl+ Gp+G GK++ ++++++++++     +++n+    ++nq   +i
  CCD25994.2  4 VGVLVLGPAGAGKSTFCNSIISHMQTIGRRAHIVNLDPAAEPNQYEFTI 52
                579**********************999999999999999999887666 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   6.9e-05     0.044      30      62 ..      13      43 ..       4      55 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 6.9e-05
  KAP_NTPase 30 GsGKssllnkledelkefakpvrflfaefnaws 62
                G+GKs+++n++++ +++    +r +++++++++
  CCD25994.2 13 GAGKSTFCNSIISHMQTI--GRRAHIVNLDPAA 43
                9*****************..9*********986 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   5.4e-05     0.035     129     162 ..       3      38 ..       1      51 [. 0.79

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 5.4e-05
       T2SSE 129 rglilvsGgTgsGKttllyallkeinks..derivt 162
                 r  +lv G+ g GK+t+ +++++ +++     +iv 
  CCD25994.2   3 RVGVLVLGPAGAGKSTFCNSIISHMQTIgrRAHIVN 38 
                 6779*******************9999843444554 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00058      0.37       2      48 ..       7      50 ..       6      57 .. 0.73
   2 ?    1.2   0.0       0.4   2.5e+02      34      75 ..     187     229 ..     169     242 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00058
  Viral_helicase1  2 vvhGvpGcGKStlirkllrtsliltvnrptaelltegkpklpnlsvr 48
                     +v G +G+GKSt + +++++    t++r+ a +++     +pn+  +
       CCD25994.2  7 LVLGPAGAGKSTFCNSIISH--MQTIGRR-AHIVNLDPAAEPNQYEF 50
                     799***************99..5555666.66666555555555555 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.4
  Viral_helicase1  34 lltegk..pklpnlsvrtvdsflmalvks.tkgkililDEylllh 75 
                      l +  +  p++  ls++t+d+  +++  +  ++  +++D++++++
       CCD25994.2 187 LKR--FlnPDAMLLSTETIDKEMNPRFHHlNECIANLVDDFGMVQ 229
                      333..24599999999****98888888899999*******9987 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   9.9e-05     0.064       5      56 ..       6      67 ..       2      96 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 9.9e-05
      AAA_24  5 iliyGpsgiGKTtlakel.......gpkplfidtekGlksldadkfpdie...swedfldev 56
                +l+ Gp+g+GK+t+++++       g ++ +++++  +   +     di+   s++d+++e+
  CCD25994.2  6 VLVLGPAGAGKSTFCNSIishmqtiGRRAHIVNLDPAAEPNQYEFTIDIRdliSLDDVMEEL 67
                799**************988888888888888888876666666666666666666666665 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00015     0.098      23      42 ..       5      23 ..       1      32 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00015
      AAA_29 23 gatlltGpsGsGKSTllDAi 42
                g +l+ Gp G+GKST+  +i
  CCD25994.2  5 G-VLVLGPAGAGKSTFCNSI 23
                5.89***********97666 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0    0.0002      0.13       9      66 ..       7      60 ..       3      89 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.0002
      AAA_22  9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralgl 66
                +v G++G+GK+t ++ + +  +       +r+++v  +++++ ++ ++  ++   + l
  CCD25994.2  7 LVLGPAGAGKSTFCNSIISHMQ----TIGRRAHIVNLDPAAEPNQYEFTIDIRDLISL 60
                789**************99873....33478888888888888888887777766655 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00027      0.17      23      50 ..       6      33 ..       1      38 [. 0.86
   2 ?   -0.7   0.1         1   6.7e+02     102     117 ..      53      68 ..      47      71 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00027
                EEEEESTTSSHHHHHHHHCCSHCCCCCC CS
      NB-ARC 23 valvGmgGvGKttlakqilnksdevegr 50
                v + G +G GK+t  ++i+++++++ +r
  CCD25994.2  6 VLVLGPAGAGKSTFCNSIISHMQTIGRR 33
                7799*****************9998775 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1
                 CTTEEEEEEEE-SHHH CS
      NB-ARC 102 tkrfllvlDDVweeed 117
                 + r l+ lDDV ee d
  CCD25994.2  53 DIRDLISLDDVMEELD 68 
                 5588999*****9966 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00017      0.11      21      50 ..       6      35 ..       2      45 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
      AAA_30 21 avltGpAGtGKttalkalreaweaaggrvi 50
                +++ GpAG+GK+t  +++  ++++ g+r +
  CCD25994.2  6 VLVLGPAGAGKSTFCNSIISHMQTIGRRAH 35
                5789**************999999887654 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00029      0.19      13      40 ..       6      33 ..       1      44 [. 0.86
   2 ?   -1.9   0.0       6.1   3.9e+03      97     115 ..     211     229 ..     155     235 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00029
      AAA_19 13 llvtaGpGtGKTrvlkhivallvelggv 40
                +lv++++G GK++  + i+++++ +g++
  CCD25994.2  6 VLVLGPAGAGKSTFCNSIISHMQTIGRR 33
                79*********************99965 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 6.1
      AAA_19  97 ekklqeeellivDEfqdvd 115
                  ++l+e+ + +vD f +v+
  CCD25994.2 211 FHHLNECIANLVDDFGMVQ 229
                 3445445566778777776 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00022      0.14      26      49 ..       5      28 ..       1      96 [. 0.82

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00022
      AAA_16 26 lvllsGesGvGKsslvrellrale 49
                 vl+ G++G GKs+  +++  +++
  CCD25994.2  5 GVLVLGPAGAGKSTFCNSIISHMQ 28
                69*************999887554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00031       0.2       1      29 [.       6      39 ..       6      59 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00031
                EEEESSTTSSHHHHHHHHHHHHT.....HEEEEE CS
         AAA  1 vllyGppGtGKTllakavakelg.....veflei 29
                vl+ Gp G GK++++++++++++     ++++++
  CCD25994.2  6 VLVLGPAGAGKSTFCNSIISHMQtigrrAHIVNL 39
                799*****************99533333555554 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00032       0.2       3      25 ..       6      28 ..       5      36 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00032
                EEEEC-TTTCHHHHHHHHHHHHC CS
       NACHT  3 vilqGeaGsGKTtLlqklalawa 25
                v++ G+aG GK+t+  ++++ ++
  CCD25994.2  6 VLVLGPAGAGKSTFCNSIISHMQ 28
                789***************99876 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0026       1.7       4      34 ..       7      38 ..       4      54 .. 0.80
   2 ?    1.3   0.0      0.35   2.2e+02     138     164 ..     163     189 ..     136     197 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0026
                EEEESTTCCHHHHHHHHH.CT--SS-EEEEES CS
        cobW  4 vltGflGsGKTtLlnhll.enraglklavivN 34
                ++ G+ G+GK+t+ n+++ + +   + a ivN
  CCD25994.2  7 LVLGPAGAGKSTFCNSIIsHMQTIGRRAHIVN 38
                678***************64444445555555 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.35
                 HHHTSSEEEEE-HHHHCHC..HHHHHH CS
        cobW 138 qlaaadllvlnKtDlldeealleklee 164
                  l+   + vl+K Dl++++ + ++l++
  CCD25994.2 163 LLELPHINVLSKLDLIKDDYNKKRLKR 189
                 556666779********9966577665 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00036      0.23      22      63 ..       3      46 ..       1      49 [. 0.78

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00036
                     SS-EEEECSTTSSHHHHHHHH..HHHSTTTTS-EEEEETTTS-T CS
  Sigma54_activat 22 dlsvlitGesGtGKellarai..heaskrkekpfvavncaaipe 63
                     ++ vl++G  G+GK+++ ++i  h ++  +++++v+++ aa p+
       CCD25994.2  3 RVGVLVLGPAGAGKSTFCNSIisHMQTIGRRAHIVNLDPAAEPN 46
                     5779***************9944445555777888888888776 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00048      0.31       1      48 [.       5      55 ..       5      73 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00048
                EEEEE--SSSSHHHHHHHGGGGB...S--EEEEE--TT--HHHHH--B--. CS
       AAA_5  1 dvlLvGppGtgKselaerlaaal...nreveyvqltrdtteedlkgrreik 48
                +vl++Gp G gKs++  ++ + +   +r+ ++v+l    ++++    ++i+
  CCD25994.2  5 GVLVLGPAGAGKSTFCNSIISHMqtiGRRAHIVNLDPAAEPNQYEFTIDIR 55
                599***************999999999******999999988877777764 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00052      0.33       3      23 ..       6      26 ..       4      43 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00052
                EEEESSTTSSHHHHHHHHHTS CS
        AIG1  3 ivlvGktgnGkSaTgNsilgk 23
                ++++G  g+GkS+  Nsi+ +
  CCD25994.2  6 VLVLGPAGAGKSTFCNSIISH 26
                799***************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        28  (0.00156172); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1989.70
//
Query:       CCD25995.2  [L=464]
Description: hypothetical protein NDAI_0G02200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.8e-169  561.2   0.6   1.1e-168  560.9   0.6    1.1  1  TIP49            TIP49 P-loop domain
    1.2e-22   79.8   0.2      3e-22   78.5   0.2    1.8  1  TIP49_C          TIP49 AAA-lid domain
    4.2e-08   33.7   0.9    8.6e-05   23.0   0.0    3.0  3  AAA              ATPase family associated with various cellul
    1.4e-07   31.4   0.1    5.2e-05   23.1   0.0    2.6  2  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
     0.0012   19.1   0.0     0.0025   18.1   0.0    1.5  1  AAA_28           AAA domain
     0.0047   17.3   0.6        3.7    7.9   0.2    2.4  2  AAA_19           AAA domain
  ------ inclusion threshold ------
      0.013   14.8   0.0      0.031   13.6   0.0    1.6  1  DnaB_C           DnaB-like helicase C terminal domain
      0.017   15.1   0.2        0.7    9.9   0.0    2.6  2  AAA_5            AAA domain (dynein-related subfamily)
       0.02   15.3   0.3       0.15   12.5   0.1    2.5  2  AAA_16           AAA ATPase domain
       0.03   13.7   0.1        3.6    6.9   0.0    2.3  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
      0.042   13.7   0.0        0.1   12.4   0.0    1.7  2  CPT              Chloramphenicol phosphotransferase-like prot
      0.052   13.6   0.0        1.2    9.2   0.0    2.5  2  AAA_14           AAA domain
      0.054   13.2   0.3        6.2    6.5   0.0    2.7  3  Sigma54_activat  Sigma-54 interaction domain
      0.078   12.3   0.1       0.18   11.1   0.1    1.6  1  Zeta_toxin       Zeta toxin


Domain annotation for each model (and alignments):
>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  560.9   0.6  8.5e-172  1.1e-168       1     350 [.      24     378 ..      24     379 .. 0.99

  Alignments for each domain:
  == domain 1  score: 560.9 bits;  conditional E-value: 8.5e-172
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49   1 rislhshikgLGldedgeaekeeeglvGqkkareaagvivelikekklaGravLlaGpsgtGktalaiaiskelgedvpfvalsgsevyslevkktevl 99 
                 r+++h+hikgLGlde+g a+++e+g+vGq++area+gviv+lik+kk++Gra+LlaG ++tGktala+ais+elg +vpf+ l+gse+ys+evkkte+l
  CCD25995.2  24 RTAAHTHIKGLGLDETGVAKRVEGGFVGQMEAREACGVIVDLIKAKKMSGRAILLAGGPSTGKTALALAISQELGPKVPFCPLVGSELYSVEVKKTETL 122
                 689************************************************************************************************ PP

                 XXXXXXXXXXXXXX-S-EEEEEEEEEEE...-SSS-...TTS--EEEEEE-SS-EEEEEE-HHHHHHHHHHT--TT-EEEEETTT--EEE-SSS-SS-- CS
       TIP49 100 tqalrksigvrikeekevleGevveleveeaenpls.kekkikevkitlktakeekklklgskiaeellkekvkegDviviekesGkvkklGrsearak 197
                 ++++r++ig+rike+kev+eGev+el++e+aenpl+ ++k+i++v++ lk+ak++k+l+l+++i+e++++ekv+ gDvi+ie+++G+vk++Grs+a+a+
  CCD25995.2 123 MENFRRAIGLRIKETKEVYEGEVTELTPEDAENPLGgYGKTISHVIVGLKSAKGTKTLRLDPSIYESIQREKVNIGDVIYIEANTGAVKRVGRSDAYAT 221
                 ************************************9************************************************************** PP

                 ----S--------S---S----XXXXXXXXXXXXXXXXX...XXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 198 efDiekdefvelPkGevekkkevvqevtLhdlDvanarp...qdllslllqllkskkteiteklreeinkkvakyveegkaeivpGvlfiDevhmlDie 293
                 efD+e++e+v+lPkGev+kkke+vq+vtLhdlD+anarp   qd++s++ q+lk+kkteiteklr+e+nk+vaky+++g+ae++pGvlfiDev+mlDie
  CCD25995.2 222 EFDLETEEYVPLPKGEVHKKKEIVQDVTLHDLDIANARPqggQDVVSVMGQILKPKKTEITEKLRTEVNKVVAKYIDQGVAELIPGVLFIDEVNMLDIE 320
                 ***************************************9999******************************************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49 294 cfsylnraleselaPivilatnrgiakirGt.diisphGipvDlldrlliiktekytk 350
                 +f+ylnrales++aP+v+la+nrg++++rGt di+sphG+p Dl+drlli++t +ytk
  CCD25995.2 321 IFTYLNRALESNIAPVVVLASNRGMTTVRGTtDIVSPHGVPPDLIDRLLIVRTLPYTK 378
                 ******************************99************************98 PP

>> TIP49_C  TIP49 AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5   0.2   2.4e-25     3e-22       1      66 []     384     449 ..     384     449 .. 1.00

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 2.4e-25
     TIP49_C   1 IlkiRakeEgvkldeeAldlLakigtetSLRYaiqLltpasilakkrkkkevevedveeveeLFlD 66 
                 I+++R k+E+++l  +AldlLa++g etSLRY++qLl+p+ ila++++++e+ ved++e++ LFlD
  CCD25995.2 384 IIERRSKVENLELATDALDLLANMGAETSLRYSLQLLSPSGILAETSGRNEILVEDINEASLLFLD 449
                 9****************************************************************9 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   6.7e-08   8.6e-05       1      49 [.      76     126 ..      76     140 .. 0.86
   2 !    8.0   0.0    0.0028       3.6      27      70 ..     274     317 ..     255     349 .. 0.82
   3 ?   -1.6   0.0       2.6   3.3e+03      65      95 ..     379     409 ..     379     446 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 6.7e-08
                 EEEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSSSTTHHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg..vefleisgsellskyvgesekkirel 49 
                 +ll G p tGKT+la a+ +elg  v+f+ + gsel s  v+++e  ++++
  CCD25995.2  76 ILLAGGPSTGKTALALAISQELGpkVPFCPLVGSELYSVEVKKTETLMENF 126
                 69********************655************88888888776654 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0028
                 EEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGH CS
         AAA  27 leisgsellskyvgesekkirelfkeakekakpsilfiDEidal 70 
                 l+ + +e+++k+  e +k +++++++  ++  p +lfiDE+  l
  CCD25995.2 274 LKPKKTEITEKLRTEVNKVVAKYIDQGVAELIPGVLFIDEVNML 317
                 56677899999999**********995444458*******9765 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 2.6
                 ETGGGHHHHHTTCCCHHHHHHHHHHHHHHHH CS
         AAA  65 DEidalaksrsgseseeeervvnqLlteldg 95 
                 DEi +++++rs+ e+ e  + +  Ll+ +  
  CCD25995.2 379 DEIRSIIERRSKVENLELATDALDLLANMGA 409
                 8999999999777776666666666666555 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     4e-08   5.2e-05       8      61 ..      48     101 ..      43     107 .. 0.94
   2 ?    5.4   0.0     0.011        14      86     117 ..     307     338 ..     279     351 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 4e-08
      RuvB_N   8 eyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvkl 61 
                  ++gq + +e   ++++  k+++ +   +ll+G P  Gkt+la  i++elg k+
  CCD25995.2  48 GFVGQMEAREACGVIVDLIKAKKMSGRAILLAGGPSTGKTALALAISQELGPKV 101
                 59************************************************9765 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.011
      RuvB_N  86 dvlfideihrlsraveevlysamedfrldivi 117
                  vlfide+  l+ ++  +l  a+e     +v+
  CCD25995.2 307 GVLFIDEVNMLDIEIFTYLNRALESNIAPVVV 338
                 59**********************88777766 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.9e-06    0.0025       2      63 ..      76     140 ..      75     154 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.9e-06
      AAA_28   2 ivitGgestGKTtlleaLaar...gypvvpEaareileeklakgedalpwv.edllafaervleeq 63 
                 i + Gg+stGKT l+ a++++   ++p  p ++ e+++ + +k+e  l +  ++++ ++++  +e 
  CCD25995.2  76 ILLAGGPSTGKTALALAISQElgpKVPFCPLVGSELYSVEVKKTET-LMENfRRAIGLRIKETKEV 140
                 8999***************9997778888***********999987.5554466666666655554 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.2    0.0029       3.7       7      31 ..      70      94 ..      65     101 .. 0.81
   2 !    7.4   0.0    0.0041       5.2      69     126 ..     247     329 ..     159     339 .. 0.57

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0029
      AAA_19  7 alkekvllvtaGpGtGKTrvlkhiv 31
                +++ + +l+ +Gp tGKT +  +i 
  CCD25995.2 70 KMSGRAILLAGGPSTGKTALALAIS 94
                678899************9876665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0041
      AAA_19  69 atTiHrlal.........................ldfddlltealelle...........eaeeekklqeeellivDEfqdvdelqyrLlkall 126
                   T+H l +                         +          e l+           ++    +l    +l++DE+ ++d  +++ l++ l
  CCD25995.2 247 DVTLHDLDIanarpqggqdvvsvmgqilkpkkteI---------TEKLRtevnkvvakyiDQ-GVAEL-IPGVLFIDEVNMLDIEIFTYLNRAL 329
                 55666654456666666666666665544444320.........222223333333332221.22222.3459**********55555555444 PP

>> DnaB_C  DnaB-like helicase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   2.4e-05     0.031      19      65 ..      73     123 ..      64     167 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.4e-05
                 TXEEEEEEXTTSSHHHHHHHHHHHHHHCSTSE....EEEEESSSXHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxx RF
      DnaB_C  19 gdliiiAarpsmGktalalniaenaavkeklp....vavfslemsaeqlvq 65 
                 g  i++A+ ps+Gktalal i ++   k          ++s+e ++++ ++
  CCD25995.2  73 GRAILLAGGPSTGKTALALAISQELGPKVPFCplvgSELYSVEVKKTETLM 123
                 67899*****************98775433212322567777777766554 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.1   1.3e+02       2      24 ..      76      98 ..      75     115 .. 0.84
   2 ?    9.9   0.0   0.00055       0.7      65      93 ..     305     333 ..     272     347 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.1
                EEEE--SSSSHHHHHHHGGGGBS CS
       AAA_5  2 vlLvGppGtgKselaerlaaaln 24
                +lL G p tgK+ la  +++ l+
  CCD25995.2 76 ILLAGGPSTGKTALALAISQELG 98
                799*************9998873 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00055
                 G-SEEEEESGGG--HHHHHHHHHHHHSSE CS
       AAA_5  65 egeilvlDEveraesevlnsLlslleerr 93 
                  + +l++DEv++++ e++  L++ le + 
  CCD25995.2 305 IPGVLFIDEVNMLDIEIFTYLNRALESNI 333
                 6789*********************9876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   0.00011      0.15      22      51 ..      71     100 ..      61     339 .. 0.83
   2 ?   -1.2   0.0       1.8   2.3e+03     121     163 ..     379     421 ..     370     430 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00011
      AAA_16  22 grpelvllsGesGvGKsslvrellralekd 51 
                  +++++ll G + +GK++l+ ++ ++l  +
  CCD25995.2  71 MSGRAILLAGGPSTGKTALALAISQELGPK 100
                 3459*******************9999888 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.8
      AAA_16 121 ellkrllallsrderplvlvlDdlqwadeaslql.laaLlrlle 163
                 +++++++++ s+ e  l l  D l+ +  + ++  l++ l+ll+
  CCD25995.2 379 DEIRSIIERRSKVEN-LELATDALDLLANMGAETsLRYSLQLLS 421
                 677888866676577.9999999998888887777777666655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0028       3.6      22      64 ..      73     115 ..      49     129 .. 0.73
   2 ?    4.5   0.0     0.016        20     107     133 ..     306     332 ..     298     347 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0028
  Mg_chelatase  22 gHnlllvGppGsGKtmlakrlpsllpplseeealevakiasva 64 
                   g  +ll+G p +GKt la ++++ l p      l  ++++sv 
    CCD25995.2  73 GRAILLAGGPSTGKTALALAISQELGPKVPFCPLVGSELYSVE 115
                   5689**************9999877776655555555555555 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.016
  Mg_chelatase 107 nGvLfLDElpefkrkvlevLRePledg 133
                    GvLf+DE+  ++ +++  L + le++
    CCD25995.2 306 PGVLFIDEVNMLDIEIFTYLNRALESN 332
                   59*******************999986 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       7.7   9.9e+03     125     149 ..       7      31 ..       3      32 .. 0.77
   2 ?   12.4   0.0   8.2e-05       0.1       1      24 [.      73      96 ..      73     154 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 7.7
                 HHHHHHTSSSTTHHHHHTTGGGTT- CS
         CPT 125 rRelergdRepGlaalqaeavHaga 149
                  ++ + +++ +G aa  ++a+H+++
  CCD25995.2   7 VKNDNSSNKFAGNAAATRTAAHTHI 31 
                 5666777888999999999999875 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 8.2e-05
                --EEEEEE-TTSSHHHHHHHHHHH CS
         CPT  1 ariilLnGgsssGKsslaralqev 24
                +r ilL Gg+s+GK++la a+ + 
  CCD25995.2 73 GRAILLAGGPSTGKTALALAISQE 96
                688*****************9664 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.23     3e+02       3      27 ..      74      98 ..      72     141 .. 0.72
   2 ?    9.2   0.0   0.00091       1.2      54     108 ..     295     349 ..     272     360 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.23
      AAA_14  3 kilvitGaRrvGKTtllkqlikell 27
                +++++ G   +GKT l+  + +el 
  CCD25995.2 74 RAILLAGGPSTGKTALALAISQELG 98
                7889999999******999988876 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00091
      AAA_14  54 elileklkeekktylflDEiqev.pewekalkslvdegknldvivtGSnskllske 108
                 ++i + + e    +lf+DE+ ++  e++++l++ ++++    v+v  Sn ++   +
  CCD25995.2 295 KYIDQGVAELIPGVLFIDEVNMLdIEIFTYLNRALESN-IAPVVVLASNRGMTTVR 349
                 33333333334568********9459**********99.789*******9997655 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.029        37      11      45 ..      62      96 ..      52     110 .. 0.80
   2 ?   -4.0   0.1       7.9     1e+04     102     149 ..     238     285 ..     237     288 .. 0.73
   3 ?    6.5   0.0    0.0049       6.2      95     120 ..     307     332 ..     294     344 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.029
                     HHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHH CS
  Sigma54_activat 11 lleqikkvaktdlsvlitGesGtGKellaraihea 45
                     +++ ik+   +   +l+ G   tGK+ la ai ++
       CCD25995.2 62 IVDLIKAKKMSGRAILLAGGPSTGKTALALAISQE 96
                     55667777777799***************999875 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 7.9
                      GGGS-HHHHHHHHHHHHHSEEESBTSSSEEE--EEEEEEESS-HHHHH CS
  Sigma54_activat 102 igelplelQekLlrvlqegevervGsskeikvdvriiaatnedleeav 149
                      +++ +  +Q   l+ l+  + ++ G+++ ++v  +i+   +++++e++
       CCD25995.2 238 VHKKKEIVQDVTLHDLDIANARPQGGQDVVSVMGQILKPKKTEITEKL 285
                      566666677888888888888888888888888888877777777665 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0049
                      SEEEEETGGGS-HHHHHHHHHHHHHS CS
  Sigma54_activat  95 GtlfLDeigelplelQekLlrvlqeg 120
                      G+lf+De++ l++e+ + L r+l+++
       CCD25995.2 307 GVLFIDEVNMLDIEIFTYLNRALESN 332
                      9******************9999976 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00014      0.18      17      41 ..      74      98 ..      64     107 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00014
  Zeta_toxin 17 klillgGqpGAGKselaellkdele 41
                 +ill+G+p  GK++la ++ +el+
  CCD25995.2 74 RAILLAGGPSTGKTALALAISQELG 98
                58*******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       572  (0.0319036); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3480.64
//
Query:       CCD25996.2  [L=629]
Description: hypothetical protein NDAI_0G02210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-119  400.3  10.5   2.5e-119  400.1  10.5    1.0  1  Sec1      Sec1 family


Domain annotation for each model (and alignments):
>> Sec1  Sec1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.1  10.5  1.4e-123  2.5e-119       1     575 []      25     622 ..      25     622 .. 0.84

  Alignments for each domain:
  == domain 1  score: 400.1 bits;  conditional E-value: 1.4e-123
                 EEEEE-HHHHHHHHTT--HHHHHTTTEEETT..T.--S-.....BTTSEEEEEE-S-HHHHHHHHHHHHSS-SBS-EEEEESS---HHHHHHHHH..S. CS
        Sec1   1 KvLvlDkelskilssvlkvsdlleegVtkieklk.krepskrealphlkaiyflrptkenidrlakdfisarrykeyhifftprlseslleglakade. 97 
                 KvL+lD++++ i+ss+l+v+dll+ gVt  + +k +r +     lp+++++yf++p++enid+++ d  ++ +y++++i+ft++l+++lle+la++ + 
  CCD25996.2  25 KVLILDRKSTAIISSILRVNDLLKAGVTVHSLIKqDRAS-----LPDVPVVYFVTPNQENIDIIV-DDLKNDKYSDFYINFTSTLNRDLLENLAEKVSm 117
                 9**********************88***66666545555.....*********************.667889**********************97775 PP

                 G......GGGEEEEE----SEEEETTEEE-STTHHHHSTTG.....GG.......--HHHHHHHHHHHHHHH-..--EEEE.-TT-HHHHHHHH..... CS
        Sec1  98 e.....vvkkvklkelnldfvplesdlfslnpelplsfrdlyldndnsaleeeieslldriakgLlsvllslekkiPiiry.kgsaasmvakkladelk 190
                        +k+v+  +++ldf+++e+ lfsl  elp+ +    l n +sa+ee i++l+d++a+gL++ ++++   iPiir+ kg +a+m+a+kl  +l+
  CCD25996.2 118 TgksxeKIKQVF--DQYLDFIVTEPELFSL--ELPNTYA---LLNTPSATEESINQLCDKVADGLFNTVMTT-DSIPIIRApKGGPAEMIAEKLGMKLR 208
                 599888888888..****************..6555554...44677888999**************88888.78************************ PP

                 ......HHHHTTT.........--SS--EEEEE-GGG-SSTTTS---BHHHHHHHHS--BTEEEEEE--SS...SEEEEEE--TT..-TTHHHHTTSBH CS
        Sec1 191 ekids.kknfese.........ssrqrpvLiIlDRsvDlvtpllhqwTYqaliddllgglnnnnvvleeep...keekeaelvesssDeffaelrhlnf 276
                 +++ + k ++++           s +r+vL+IlDR++D++ ++ h+w Yq+++ d+++ l +n++ +  ++     ++++ ++e  +D+f+ e+ hl+f
  CCD25996.2 209 DYVINsK-STSNVvtststsnpDSLERSVLVILDRKIDFACMFQHSWIYQCMVFDIFK-LSRNTITVPIKNeqgHVTEKQFDIEP-NDFFWIENSHLPF 304
                 8877633.33333689999999***********************************8.85555555555599888888888888.9************ PP

                 HHHHHHHHHHHHHHHHHH.HTTT....-..........TTHHHHHHHHHH-GGGHHHHHHHHHHHHHHHHHHHHS-HHH.HHHHHHHHHHHHSS--.B- CS
        Sec1 277 gevgeklkkeakeyqeen.ekkrn.gak..........esiadlkkfvaklpelqeekkklskHtnlaeellkevkkrkldellelEqdlatgesdkki 363
                 +e++e++++ +++y+ee+ e++++ g++          +++ +++++v+klpel+++k+++++H+n+ ++ll+e+++++ld+++e+Eqd    +   ++
  CCD25996.2 305 PEAAENVETALSTYKEEAaEITKKtGVTnltdldpnsnNDTVQIQEAVKKLPELTARKNTIDTHMNIFGSLLNELENKNLDKFFEIEQDP---N---SS 397
                 ******************9*99997777*******9999999************************************************...3...33 PP

                 -..-HHHHHHHH-TTS-H.HHHHHHHHHHHH....-B.-HT--GG....GGHHHHGGGGG.........---.BGGG-------.......-------- CS
        Sec1 364 kekkvieeliaddeptseledklRLlllyslv.egglkekelkellrelvqsalygleylktlrslek.lgllkkrkgkksskkksslklikeeedees 460
                 k ++ ++++++d+++ +++edk+R +++++l+  +gl+ + + ++ +++ ++  y+++ lk + +l + ++l  + +    ++k+ +  +++++++ + 
  CCD25996.2 398 KLRQGFLSILKDGKT-NNFEDKMRSFIVLYLTsTNGLPRD-FVDEVEKYFSDNEYDISALKYVYKLREfMQLS-NMSL---QNKSLEDGRSNKKTSTA- 489
                 4567899****9555.6789************999*9555.44444444555779866666555555522222.1222...22222223333333333. PP

                 -S.........................TT-----H.....HHHHHHHHTTT-S-TTTS-BSS-GGGS--------------------------S-EEEE CS
        Sec1 461 nyd......................lsgvsryaPl.....lvrlvealikgkklssespslskkdpsqeesssslrsakktnsaskesaekkkkqrviV 532
                   +                      +sg+++ +P      ++++vea+++ +++ss+++  +++++ + +      ++  ++s++k++++++ ++  +V
  CCD25996.2 490 --GnlslsglygltegglqggvgslISGIKKLLPEkktipITNVVEAIMD-PLNSSQKNLETTDEYLYID------PRITRGSHTKKPKRQSYNK-SLV 578
                 ..14447788999999999999****************************.********99999999865......8888888888888887767.9** PP

                 EEEEEE-HHHHHHHHHHT...TSS.SEEEEEEEEE--HHHHHH. CS
        Sec1 533 ffvGGvTysEiralrllskqekkn.keiiigttsilnpksflee 575
                 f+vGG++y E+++l+++++++ +n k +++g+t i++p++f++e
  CCD25996.2 579 FVVGGGNYFEYQNLQEWAHSQLHNpKTVMYGSTMIISPNEFMKE 622
                 ******************987766599**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       898  (0.0500865); expected 358.6 (0.02)
Passed bias filter:                      556  (0.0310112); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.22s 00:00:00.85 Elapsed: 00:00:00.38
# Mc/sec: 4941.27
//
Query:       CCD25997.2  [L=554]
Description: hypothetical protein NDAI_0G02220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   6.4e-158  526.4   2.3   7.2e-158  526.2   2.3    1.0  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family


Domain annotation for each model (and alignments):
>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  526.2   2.3    4e-162  7.2e-158       1     490 [.      29     544 ..      29     545 .. 0.96

  Alignments for each domain:
  == domain 1  score: 526.2 bits;  conditional E-value: 4e-162
                 HHHHHHCCSSTTXXEEEEEETTSEEEEEXSHHHHHHCSXXXSHHHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHHHHHHHCTXXHHHHHHHHHHHHH CS
  Cpn60_TCP1   1 ladivkttlGPkGmdKmlvnkggkvvvTnDGatilkeleiehPaakllveaaesqdeevGDGTttvviLageLleeaekliaagvhpttiiegyekale 99 
                 l+++++t+lGPkG++Kmlv+ +g++++T+DG+++l+e++i+ P+a l+++aa++qde +GDGTttvv L+geLl++a ++i++gvhp+ i++g+e a++
  CCD25997.2  29 LQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAYRFIQEGVHPRIITDGFEIARK 127
                 6789*********************************************************************************************** PP

                 HHHHHHHHHXEEBXSC....STT.HHHHHHHHHHCTTSSXXSTHHHHHHHHHHHH.HCHCCCS...EECSCCCEECCCCEECECTTSEEESEEEESS-- CS
  Cpn60_TCP1 100 kaleaLkeiaveisse....ekdreeLlkvartslsskltskeaeelsklvvdAv.klieene...keldlgrikvvkieggsledselveGlvldkgv 190
                 +al++L+e   +i+++      dre Ll+var+sls+k+ ++ +e l+ +v+dAv ++  +n+   + +dl++++++++++ s +d+ +++Glvld+g 
  CCD25997.2 128 EALKFLDEF--KIDKKgedgAIDREFLLQVARSSLSTKVNNELTEVLGPIVTDAVlNVSHSNDnnsNAMDLHMVEIMQMQHLSPKDTLFIKGLVLDHGG 224
                 ******999..55555324466*********************************888777779999******************************** PP

                 SSTTSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECE..........EEESS-B-HHHHHHHHHCT-EEE- CS
  Cpn60_TCP1 191 lspdmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnv..........vvcqkgiddlalhflakngilalr 279
                 ++pdmp ++ena+vl+l+vsLe+ekte+++++ +s+a++++kl+ +e+k+++e+l+kii+++ +v          +++qkgid+++l++lak++ilalr
  CCD25997.2 225 RHPDMPIRVENAHVLILNVSLEYEKTEVNSGFYYSSADQRDKLAASERKFVDEKLKKIIDLKNEVcgldsnkgfvIINQKGIDPMSLDVLAKHNILALR 323
                 *************************************************************************************************** PP

                 S--HHHHHHHHHHHT--EBSCGGGGGCGC-EEEEEEEECCETTCCEEEEECESSSSXEEEEEEESTCCCHHHHHHHHHHHHHHHHHHHHHHEEEETTTC CS
  Cpn60_TCP1 280 rvkkkdlerlakatGatavssledltpeelGtakkveeekigsekttiieevksgkiatillrgatdtvldeieraiedAlnvvknaiedekvvpGGGa 378
                 r+k++++erl  +tG++a +s+edl+p+ lG+ + +++e+ig+ek+t+++e k++k++til++g+t + l+++++ai+d+l++v+n+i+d+ vvpG+Ga
  CCD25997.2 324 RAKRRNMERLQLVTGGEAQNSVEDLSPSILGYSGLIYTETIGEEKFTYVTENKDPKSCTILIKGSTHYALNQTKDAIRDGLRAVANVIKDNTVVPGAGA 422
                 *************************************************************************************************** PP

                 HHHHHHHHHHCCCCT...SXCCHHHHHHHHHHHHTHHHHHHHHHCTSXHHHHHHHHHHHH.......HTTXTTEEEETTTTCEEECCCCTXEEEHHHHH CS
  Cpn60_TCP1 379 telelakklkeyaks...vsgeeqlaieafakALevipktLaeNaGldpievlaklraah.......nkgekelgidvesgeiidlveagvvDplkvkr 467
                  ++++a++lk+  ++    +g+ + +ieafa+AL+v+pktL +N+G+d+ +vla ++++        ++++  +g+d++ g+ +d++ +g++D+++v r
  CCD25997.2 423 YFIAAANHLKKSNMTklgAKGKTKTGIEAFAEALLVVPKTLVKNSGYDALDVLALCEDELedaqdggDNERRYVGVDLNIGDSCDPTIEGIWDSYRVLR 521
                 *********9999888999***********************************9999886777777444469************************** PP

                 HHHHHHHHHHHHHHCEEEEEXXX CS
  Cpn60_TCP1 468 qalksAteaastiLrideiikak 490
                 +a++ At +as +L +de ++a+
  CCD25997.2 522 NAISGATGIASNLLLCDELLRAG 544
                 ******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       365  (0.0203581); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 4383.61
//
Query:       CCD25998.2  [L=379]
Description: hypothetical protein NDAI_0G02230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-48  164.3   0.1    3.7e-48  164.0   0.1    1.1  1  Peptidase_M24  Metallopeptidase family M24
    6.6e-17   61.6   6.0    6.6e-17   61.6   6.0    1.7  2  zf-C6H2        zf-MYND-like zinc finger, mRNA-binding


Domain annotation for each model (and alignments):
>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   0.1   4.1e-52   3.7e-48       2     209 .]     130     357 ..     129     357 .. 0.88

  Alignments for each domain:
  == domain 1  score: 164.0 bits;  conditional E-value: 4.1e-52
                    HHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTT....TCEESSSSEEEEGGGGGSTTTBCSSSB--TTEEEEEEEEEEETTEEEEEE CS
  Peptidase_M24   2 lirkaariasaaleavleaikpgvterelaaeieattlkrhg....arglafppivasgenaavlhytpndrvlkegdlvlidagaeydgyasDit 93 
                     irka+   +++l+ +++a++pg+t++e++a+++++t+kr       +++ fp++v++++n+ ++h++p+++vlkegd+v++d+ +  +g+++D  
     CCD25998.2 130 IIRKACMFGREILDIAAAAVRPGITTDEIDAIVHEETIKRDCypspLNYYNFPKSVCTSINEVICHGIPDKTVLKEGDIVNLDVLVY-QGFHADLN 224
                    589***********99999***************998888668899*************************************9875.******** PP

                    EEEECS.SGSHHHHHHHHHHHHHHHHHHHC-STTSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEESSSSSEEEEEESS..STTCSSB--TTBEEEE CS
  Peptidase_M24  94 rTvlvG.kftpeqrelyeavleaqeaaikavkpGvtlseidaaarevlesaglakffphglGHgvGlevhdegpsvsr..esndgrkleeGmvfti 186
                     T++vG +  +e  + +e+++e++++aik++kpG+t++e+++++++++ +++  ++++ ++GHgvG  +h   ps+++  +++   ++++Gmvfti
     CCD25998.2 225 ETYYVGeNIRKEVINTVETARECLKNAIKLCKPGMTFQELGDHIEKHALENKC-SVVRTYCGHGVGKYFHCA-PSIPHyaNNRAAGVMKPGMVFTI 318
                    ******666668999***********************************999.999*************98.9998765445899********** PP

                    EE....EEE...EETTT............EEEEEBEEEEEES CS
  Peptidase_M24 187 Ep....giy...fapge............ggvriedtvlvte 209
                    Ep    g++       +             ++++e+ +l+te
     CCD25998.2 319 EPmineGVWqdiS---WpddwtsttkdgkVSAQFEHSLLITE 357
                    **55554443330...24444666666636**********97 PP

>> zf-C6H2  zf-MYND-like zinc finger, mRNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   6.0   7.4e-21   6.6e-17       1      46 [.      12      57 ..      12      58 .. 0.96
   2 ?   -4.2   0.0         2   1.8e+04      18      22 ..     247     251 ..     245     254 .. 0.47

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 7.4e-21
     zf-C6H2  1 CasseCgkeass.LqCptClklgikesfFCsqeCFkknwkkHkalHk 46
                Ca+ +Cgke++s L+Cp+Clk gi  s+FC+++CFk+n+k+HkalH 
  CCD25998.2 12 CAGLQCGKETTSqLKCPICLKSGII-SIFCDDDCFKDNYKAHKALHY 57
                9*****9999988************.********************6 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 2
     zf-C6H2  18 Clklg 22 
                 Clk  
  CCD25998.2 247 CLKNA 251
                 44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2731.01
//
Query:       CCD25999.2  [L=176]
Description: hypothetical protein NDAI_0G02240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.6e-10   38.6   2.3    4.6e-09   36.1   2.3    1.9  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    6.6e-06   25.9   1.1     0.0006   19.5   0.1    2.1  2  LmjF365940-deam  A distinct subfamily of CDD/CDA-like deamina
      2e-05   24.8   0.6       0.01   16.0   0.0    2.6  2  dCMP_cyt_deam_2  Cytidine and deoxycytidylate deaminase zinc-
  ------ inclusion threshold ------
       0.19   11.6   0.0        3.4    7.6   0.0    2.1  2  Motilin_assoc    Motilin/ghrelin-associated peptide


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   2.3     1e-12   4.6e-09       7      93 ..      24     139 ..      19     147 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.1 bits;  conditional E-value: 1e-12
                      HHHHHHHHHHHHH.TTTSCSEEEEEEE.TTEE.........EEEEESBHHCCTGTTB-HHHHHHHHHHHH.T..SSCETTEEEEE......... CS
  dCMP_cyt_deam_1   7 llelalkaakeaq.kcsnfkVGavivk.ngei.........istgyngepaggsktiHAEvnAilkaakn.g..gsklegatlyv......... 77 
                      l+++ ++ ++ ++ ++s+fkVG++++  n+e          +++g+n e+a++   i+AE++ i ka++     +++ ++at +v         
       CCD25999.2  24 LISKLIESKSLSYsPYSHFKVGCCLLIkNNETtsdgesfysYVLGANIENASYGASICAERTTIVKALTStTttTTTCKDATNWVciaiiggcd 117
                      56667777788888**********988687762222222224578999999999*************99864345556899988899999**** PP

                      ......EE--BHHHHHHHHHHT CS
  dCMP_cyt_deam_1  78 ......tlePCsmCakaiiqsg 93 
                             ++PC+ C+++i ++ 
       CCD25999.2 118 nddggkIISPCGICRQVIREFV 139
                      *****9************9986 PP

>> LmjF365940-deam  A distinct subfamily of CDD/CDA-like deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   1.3e-07    0.0006      39      91 ..      44      96 ..      25     114 .. 0.89
   2 !    5.5   0.1    0.0025        11     154     181 ..     125     150 ..     110     160 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.3e-07
  LmjF365940-deam 39 VlavllvekkkaelggdgreelvrgvNlEvSmPtGSlCsErnaigkalasdps 91
                     V   ll++++++  +g++  ++v g N+E      S C+Er  i kal+s  +
       CCD25999.2 44 VGCCLLIKNNETTSDGESFYSYVLGANIENASYGASICAERTTIVKALTSTTT 96
                     667899**999999999********************************9876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0025
  LmjF365940-deam 154 LkPCGaCeewLkkiaevnp.dfkvltFdd 181
                      + PCG+C++ ++   e  p df +++F++
       CCD25999.2 125 ISPCGICRQVIR---EFVPlDFPIVMFNA 150
                      57******9866...44444899999975 PP

>> dCMP_cyt_deam_2  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.3e-06      0.01      43     108 ..      20      95 ..       2     108 .. 0.71
   2 !    6.5   0.1     0.002       8.8       2      16 ..     161     175 ..     160     176 .] 0.88

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.3e-06
                      .S-HHHHHHHHHHTT-B-TTT---EEEEEEETTS-E..........EEEE-B--TTSTT-B-HHHHHHHHHHHTT- CS
  dCMP_cyt_deam_2  43 kddelkeaAlaaanasyapyskcpsGvaLvtkdgkv..........yaGsyiEsaAfNpsLpPlqaAlvalvlggk 108
                        ++l  + ++    sy+pys+   G  L +k++++          + G  iE+a +  s+ + ++ +v+++++ +
       CCD25999.2  20 IGHKLISKLIESKSLSYSPYSHFKVGCCLLIKNNETtsdgesfysyVLGANIENASYGASICAERTTIVKALTSTT 95 
                      36679999999******************9887654222222222136999***********99999999988443 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.002
                      HHHSTT--SGGGGTS CS
  dCMP_cyt_deam_2   2 sslLPhsFgPkdLls 16 
                      ++lLP+sFgP+ L++
       CCD25999.2 161 EQLLPDSFGPDHLTH 175
                      789********9987 PP

>> Motilin_assoc  Motilin/ghrelin-associated peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00075       3.4      10      32 ..       4      26 ..       1      33 [. 0.83
   2 ?    1.9   0.0     0.046   2.1e+02      18      48 ..     135     166 ..     132     171 .. 0.79

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00075
  Motilin_assoc 10 ekaedeleikfnaPfdiGiklsg 32
                    ++++ l  k++ P++iG kl +
     CCD25999.2  4 GAQDEDLSKKLHIPIEIGHKLIS 26
                   4677889***********99965 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.046
  Motilin_assoc  18 ikfnaPfdiGiklsgaq.yqqhgqaLeKlLqd 48 
                    i+  +P+d  i +  a+ +q+  +++e+lL d
     CCD25999.2 135 IREFVPLDFPIVMFNADaSQWECKTMEQLLPD 166
                    66679999999998887256678999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.27s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 1337.87
//
Query:       CCD26000.2  [L=389]
Description: hypothetical protein NDAI_0G02250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.8e-32  110.2  10.7    7.8e-32  110.2  10.7    2.5  2  DHHC        DHHC palmitoyltransferase
  ------ inclusion threshold ------
      0.031   14.9   2.4      0.031   14.9   2.4    2.2  2  DUF2645     Protein of unknown function (DUF2645)
      0.087   13.2   0.2      0.087   13.2   0.2    2.3  2  ATP-synt_I  ATP synthase I chain
       0.93    9.7   7.0          7    6.8   0.2    2.4  2  RDD         RDD family


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   1.3     0.036   1.6e+02      53      99 ..     119     165 ..      97     191 .. 0.55
   2 !  110.2  10.7   1.7e-35   7.8e-32       4     132 ..     213     330 ..     210     332 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.036
        DHHC  53 lfllylllllilalvlllialvklveeekkseflavtllkkllsill 99 
                 l +++l++l+i +++++++   kl++++k  ++l+++ +++ +++++
  CCD26000.2 119 LSIIVLIILIIPIVLFSIFETNKLWHTNKGYKVLVIFFYYTWGTCFT 165
                 34444444444444444444555555555555554444444333332 PP

  == domain 2  score: 110.2 bits;  conditional E-value: 1.7e-35
        DHHC   4 elkfCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllvl 102
                 + k+C tc+i++pprs+Hc++C+ c++ +DHhC+w+nnciG+rNy++Fl+fll+ ++ +i+ ++ ++i + ++ + +++            +++ll+++
  CCD26000.2 213 NIKYCTTCRIWRPPRSSHCSICEACIITHDHHCIWVNNCIGQRNYRFFLTFLLSGTFTSIFLIINASIDIARTPKVRDTP-----------VAVLLIIY 300
                 679************************************************************99999999999988884...........34899999 PP

        DHHC 103 sllfllllgllllfhlylilrnlTtieamk 132
                   l +   ++l+++h++++ +++Tt+e++k
  CCD26000.2 301 GGLTIWYPLILFCYHIFMTGTQQTTREYLK 330
                 99999999*******************998 PP

>> DUF2645  Protein of unknown function (DUF2645)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       2.7   1.2e+04      83      95 ..      64      76 ..      59      78 .. 0.76
   2 ?   14.9   2.4   6.9e-06     0.031      41      89 ..     111     160 ..     107     168 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.7
     DUF2645 83 illYiiWrFflRf 95
                i     W+ flR+
  CCD26000.2 64 ITNHSRWKLFLRW 76
                5567789999997 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 6.9e-06
     DUF2645  41 elelddsrdvaviaalllliPlllvlvkkklksaflv..vialvillYiiW 89 
                 ++ ++d++ +  i+ ++l+iP++l+ + +  k + ++    +lvi++Y++W
  CCD26000.2 111 QV-KKDTKYLSIIVLIILIIPIVLFSIFETNKLWHTNkgYKVLVIFFYYTW 160
                 53.5677788889999999**99966666666666652267899******* PP

>> ATP-synt_I  ATP synthase I chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.6      0.32   1.5e+03       4      20 ..     121     137 ..     116     168 .. 0.64
   2 ?   13.2   0.2   1.9e-05     0.087      23      63 ..     292     330 ..     258     336 .. 0.72

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.32
  ATP-synt_I   4 liqlvllavlalgwllt 20 
                 +i l++l++ +++++++
  CCD26000.2 121 IIVLIILIIPIVLFSIF 137
                 34444444444444444 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.9e-05
  ATP-synt_I  23 asvalsallGglisvlpfalfalrvfrfsgalarkkkkivr 63 
                 + + l +++Ggl  ++p+ lf +++f+++++++   +  ++
  CCD26000.2 292 PVAVLLIIYGGLTIWYPLILFCYHIFMTGTQQTT--REYLK 330
                 44778899*****************999987776..65555 PP

>> RDD  RDD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.2    0.0016         7      16      69 ..     121     169 ..      67     176 .. 0.77
   2 ?    5.4   1.9    0.0044        20      18      73 ..     262     325 ..     258     326 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0016
         RDD  16 vllliislllallivallnakasaneavagslllllllvlllvllvyqllllsk 69 
                 +++lii++++++l+ +     +++n  + +++ + +l++++ + +   +  ++k
  CCD26000.2 121 IIVLIILIIPIVLFSI-----FETNKLWHTNKGYKVLVIFFYYTWGTCFTSFIK 169
                 3444444444444444.....888999999988888888888777666555555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0044
         RDD  18 lliislllallivall........nakasaneavagslllllllvlllvllvyqllllskkgqT 73 
                  +++s+ ++ ++ +++         + + + +av  +++  l+++++l+l+ y+++++ ++++T
  CCD26000.2 262 TFLLSGTFTSIFLIINasidiartPKVRDTPVAVLLIIYGGLTIWYPLILFCYHIFMTGTQQTT 325
                 445555555555554466688865566666666777777778889999**********999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1219  (0.0679904); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.54u 0.25s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2785.93
//
Query:       CCD26001.2  [L=254]
Description: hypothetical protein NDAI_0G02260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.6e-54  181.5   0.2    1.6e-53  180.7   0.2    1.3  1  PRELI     PRELI-like family


Domain annotation for each model (and alignments):
>> PRELI  PRELI-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.2   8.9e-58   1.6e-53       1     156 [.      15     175 ..      15     176 .. 0.95

  Alignments for each domain:
  == domain 1  score: 180.7 bits;  conditional E-value: 8.9e-58
                 HHHHHHHHT--SBTTBTTEEEEEEEEEEEET..TSEEEEEEEEEEEEESSTTSTTTSSS.EEEEEEEEEEEEETTTTEEEEEEEESSSTTTEEEEEEEE CS
       PRELI   1 eqVtaaflrryPnpiskhvisvdvlereldd..egklvteRlitlqvrvPrwlkkligv.aktvyvleesvvdlkkrtlkletrNltfssllkveErvv 96 
                 eqV++a++++yPn++s+hvi+vdvl+rel++   + l teRlit+++ vP+w++ lig+ ++t+yv+e+s+v++k++tl+l+++Nlt++++lkv E+v 
  CCD26001.2  15 EQVSTANWNKYPNEVSTHVIAVDVLRRELSKtdPNVLITERLITVKQGVPKWIMYLIGAgDNTSYVREVSTVNKKDKTLVLKSCNLTMCNILKVFETVK 113
                 89**************************87642566**********************97888************************************ PP

                 EEEETTTT...EEEEEEEEEE...HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       PRELI  97 Ykphpens.ekTvlkqeakis.vkgslfglsskveklllkkfsenakkgkeglesvlkelee 156
                 Y+php ++ +kT+++qea+i+   gsl +++sk+e++++++f+enakkgk g+esvlke++e
  CCD26001.2 114 YSPHPMDPiNKTLFEQEAQITaYGGSLGRICSKMEDWSINRFCENAKKGKIGFESVLKEFHE 175
                 *********************655799*******************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       945  (0.0527079); expected 358.6 (0.02)
Passed bias filter:                      485  (0.0270511); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1817.01
//
Query:       CCD26002.2  [L=240]
Description: hypothetical protein NDAI_0G02270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.1e-19   67.9   0.2    1.6e-18   66.7   0.2    1.6  1  DUP         DUP family
  ------ inclusion threshold ------
       0.01   14.9   0.2      0.014   14.5   0.2    1.1  1  COX15-CtaA  Cytochrome oxidase assembly protein
      0.076   12.3   1.2        0.1   11.9   1.2    1.1  1  DUF1385     Protein of unknown function (DUF1385)
        1.7    8.5   4.9        1.2    8.9   1.8    2.2  2  DUF4051     Protein of unknown function (DUF4051)


Domain annotation for each model (and alignments):
>> DUP  DUP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.2   3.7e-22   1.6e-18       7      99 ..      76     169 ..      70     172 .. 0.84

  Alignments for each domain:
  == domain 1  score: 66.7 bits;  conditional E-value: 3.7e-22
         DUP   7 rllvlvllilllva.lvlqnlrafsksvsdekfkikllseiikekpavdakeWdtIaknmNqYLfenklwktpyfFydgedCeefFrklilepl 99 
                 +++++++l++++v  +v+++   f  +  +++ ++kll e+i+ kp+   ++Wd Ia ++N+YL+ ++  +tp +Fydg++ +  Fr+ + epl
  CCD26002.2  76 ACVYFLVLLMAVVIgYVYELRPNFKLRELNSQSQMKLLLEVIECKPTPSSSTWDVIACHVNEYLYTERYHTTPNYFYDGNEAYCWFRESVFEPL 169
                 333333333333335899999999999999999********************************************************99987 PP

>> COX15-CtaA  Cytochrome oxidase assembly protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.2   3.1e-06     0.014      75     126 ..      36      87 ..      21     103 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 3.1e-06
  COX15-CtaA  75 iawiEwiHRllgrllGllilvpllyflakkrisrelkkllllllllvglQGl 126
                  ++ E+iH  +g+++G +++++++++ +  ++++ ++  ++++ +lv+l ++
  CCD26002.2  36 YFFNEYIHQRFGQITGGVFIFICIFASISTYFKSGAAIFIACVYFLVLLMAV 87 
                 5899***********************9999988888777777777776554 PP

>> DUF1385  Protein of unknown function (DUF1385)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.2   2.2e-05       0.1     129     181 ..      44      96 ..      39     116 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 2.2e-05
     DUF1385 129 srlhprCGtsflllvlivsilvfslvgasslllrvllrllllpvvagisYeli 181
                 +r+ +  G  f+++ ++ si  +   ga  ++  v++ +ll+ vv+g  Yel 
  CCD26002.2  44 QRFGQITGGVFIFICIFASISTYFKSGAAIFIACVYFLVLLMAVVIGYVYELR 96 
                 4555667899************9999999999999999*************84 PP

>> DUF4051  Protein of unknown function (DUF4051)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.8   0.00027       1.2       2      27 ..      74     100 ..      73     102 .. 0.81
   2 ?   -0.6   0.1      0.26   1.2e+03      27      36 ..     192     201 ..     188     208 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00027
     DUF4051   2 fIaW.ywlllvvlvvvgyichlkRycr 27 
                 fIa  y l+l++ vv+gy+  l+ +++
  CCD26002.2  74 FIACvYFLVLLMAVVIGYVYELRPNFK 100
                 565428899999**********98765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.26
     DUF4051  27 rAfRqdRDAl 36 
                  AfR+ RD +
  CCD26002.2 192 AAFREFRDSV 201
                 69**999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       969  (0.0540465); expected 358.6 (0.02)
Passed bias filter:                      588  (0.032796); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1741.49
//
Query:       CCD26003.2  [L=152]
Description: hypothetical protein NDAI_0G02280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.8e-34  116.3   0.6    7.7e-34  115.3   0.6    1.5  1  ubiquitin      Ubiquitin family
    5.8e-24   84.0   3.0    5.8e-24   84.0   3.0    1.8  2  Ribosomal_S27  Ribosomal protein S27a
    4.7e-16   58.4   0.7    4.7e-16   58.4   0.7    1.7  3  Rad60-SLD      Ubiquitin-2 like Rad60 SUMO-like
    2.3e-05   24.7   0.1    0.00012   22.4   0.1    2.1  1  Ubiquitin_2    Ubiquitin-like domain
     0.0013   18.9   0.6     0.0029   17.7   0.6    1.6  1  Rad60-SLD_2    Ubiquitin-2 like Rad60 SUMO-like
     0.0037   17.6   0.5     0.0077   16.6   0.0    1.7  2  Ubiquitin_5    Ubiquitin-like domain
     0.0051   16.7   0.0      0.008   16.1   0.0    1.3  1  TBK1_ULD       TANK binding kinase 1 ubiquitin-like domain
  ------ inclusion threshold ------
      0.014   15.9   0.6      0.019   15.5   0.6    1.2  1  DUF2407        DUF2407 ubiquitin-like domain
      0.019   15.0   1.0        5.7    7.1   0.2    2.4  2  Ubiquitin_4    Ubiquitin-like domain
       0.02   15.1   0.3      0.034   14.4   0.3    1.4  1  IBR            IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.3   0.6   4.3e-37   7.7e-34       1      72 []       3      74 ..       3      74 .. 0.99

  Alignments for each domain:
  == domain 1  score: 115.3 bits;  conditional E-value: 4.3e-37
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72
                i+vktl+gk+itleve+sdt++++K ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  CCD26003.2  3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                9********************************************************************986 PP

>> Ribosomal_S27  Ribosomal protein S27a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       5.5   9.9e+03      11      18 ..      89      96 ..      84      97 .. 0.76
   2 !   84.0   3.0   3.2e-27   5.8e-24       1      44 [.     102     146 ..     102     147 .. 0.98

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.5
                   SSEEESS- CS
  Ribosomal_S27 11 gkverlrk 18
                   +k+++++k
     CCD26003.2 89 KKIKHKHK 96
                   68888887 PP

  == domain 2  score: 84.0 bits;  conditional E-value: 3.2e-27
                    SSSSCCESSSSSEEESS-B-SS-.S-TTSBEEECTTEEEESSTTT CS
  Ribosomal_S27   1 vlkyYkvddsgkverlrkeCpre.CGaGvfMAehkdRkyCGkCgl 44 
                    vl+yYkvd +gkv++lr+eC ++ CGaGvf+A+h+dR+yCGkC+ 
     CCD26003.2 102 VLSYYKVDAEGKVTKLRRECSNPtCGAGVFLANHQDRYYCGKCHS 146
                    89*****************************************95 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.7   2.6e-19   4.7e-16       1      72 []       1      71 [.       1      71 [. 0.98
   2 ?   -2.4   0.1       2.5   4.5e+03      29      44 ..      84     100 ..      82     102 .. 0.59
   3 ?   -3.6   0.0       5.9   1.1e+04      15      26 ..     106     117 ..     104     119 .. 0.78

  Alignments for each domain:
  == domain 1  score: 58.4 bits;  conditional E-value: 2.6e-19
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72
                ++i++k+ +gk+++++V+++ t+ +++++ ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  CCD26003.2  1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
                89************************************.******************************986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.5
                 HHHHHHT----.TT-EE CS
   Rad60-SLD  29 ayrkkkgipee.qkvrL 44 
                 +y + k+i+++ +kv+L
  CCD26003.2  84 VYTTPKKIKHKhKKVKL 100
                 56666666665466666 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 5.9
                 EEEETTSBHHHH CS
   Rad60-SLD  15 ikVkptttvskL 26 
                 +kV+++ +v kL
  CCD26003.2 106 YKVDAEGKVTKL 117
                 688888888887 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   6.9e-08   0.00012      16      80 ..      13      69 ..       2      70 .. 0.86

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 6.9e-08
                 EEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2 16 serrfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80
                  +  +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   CCD26003.2 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 69
                 55678899************************99........5667899*********9999995 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.6   1.6e-06    0.0029      16     100 ..      13      88 ..       2      99 .. 0.69

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 1.6e-06
                  EEEEEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE---SS----.XX....X CS
  Rad60-SLD_2  16 gpvkfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvvrenlsekksekk....a 100
                    ++ ++++t++++k k+     +dke  p  +++ +li aGk Le+ +tl++++++        +++H+v+r     kk++kk     
   CCD26003.2  13 ITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVLRLRGGGKKRKKKvyttP 88 
                  556667777777777777.....4555533..34559*****************54433......579***999888888877754432 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.3e-06    0.0077      34      93 ..      13      73 ..       5      78 .. 0.83
   2 ?   -0.8   0.1       1.2   2.1e+03      41      41 ..      90      90 ..      66     117 .. 0.56

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 4.3e-06
  Ubiquitin_5 34 klletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLkl 93
                  +le++ + t +++ ski ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+l
   CCD26003.2 13 ITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLRL 73
                 5566666677889999999*****99***********************999875467765 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.2
  Ubiquitin_5 41 d 41
                 +
   CCD26003.2 90 K 90
                 2 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.4e-06     0.008      19      53 ..      17      51 ..       4      71 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 4.4e-06
    TBK1_ULD 19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53
                +++ +t++++  +++++  i++++Q l+f g++l 
  CCD26003.2 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
                6789****************************973 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.6   1.1e-05     0.019      14      72 ..      13      82 ..       6     119 .. 0.71

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.1e-05
     DUF2407 14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslasslklpees...............v 72
                ++L+++  ++ t+ ++k  i ++    +   + rLI+aG+ Led  +l++   ++e++               +
  CCD26003.2 13 ITLEVE--SSDTIDNVKSKIQDKE--GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTlhlvlrlrgggkkrkK 82
                566666..6789999999999987..67777789**************98655554445776666665544331 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.2    0.0032       5.7       1      32 [.       1      32 [.       1      36 [. 0.94
   2 ?    6.4   0.0     0.005       8.9      58      86 ..      43      70 ..      39      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0032
  Ubiquitin_4  1 lkvtvkkldgeslevvvkqnatvkdLkkaier 32
                 +++ vk l g+++ ++v+++ t+ ++k  i+ 
   CCD26003.2  1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQD 32
                 7899*************************997 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.005
  Ubiquitin_4 58 LsfegekLkddkaklkeygirnkselsFv 86
                 L+f g++L+ d  +l++y i+++s+l+ v
   CCD26003.2 43 LIFAGKQLE-DGRTLSDYNIQKESTLHLV 70
                 889999986.6789************976 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.3   1.9e-05     0.034      12      46 ..     112     146 ..      95     148 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.9e-05
         IBR  12 lesdpnlkwCprpdCeaiieksegcksvtCskCgf 46 
                  + ++ ++ C +p C+a +   +++++  C kC+ 
  CCD26003.2 112 GKVTKLRRECSNPTCGAGVFLANHQDRYYCGKCHS 146
                 4556779*****************99999****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1064  (0.0593452); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1100.06
//
Query:       CCD26004.2  [L=858]
Description: hypothetical protein NDAI_0G02290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.8e-194  646.5  32.7     8e-194  646.0  32.7    1.1  1  Sec10     Exocyst complex component Sec10
  ------ inclusion threshold ------
        4.1    7.5  11.4       0.24   11.5   1.2    3.8  4  COG2      COG (conserved oligomeric Golgi) complex component,


Domain annotation for each model (and alignments):
>> Sec10  Exocyst complex component Sec10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  646.0  32.7  8.9e-198    8e-194       2     705 ..     125     848 ..     124     852 .. 0.95

  Alignments for each domain:
  == domain 1  score: 646.0 bits;  conditional E-value: 8.9e-198
       Sec10   2 qevvdsfnqLddkisevgqtavklgeqLesadkqrqraseaaeLiefykeflssgetsklellfkkskdpekklkaAqiarkLlaiskeld..elekae 98 
                 +++v++++ Ld+++++v+q +++lg++Le+a ++++++++++eLi  y+ef+s+ge++  e l ++ +++ +klka +i+++Ll +s +++  + +k+ 
  CCD26004.2 125 KNMVSQYDYLDNQLTTVTQVVSPLGDKLENAIRKKKTYINSVELIIQYNEFYSNGESEYIETL-RNDPNWLQKLKACNIVKNLLVLSLKIEtsSIPKTL 222
                 67899**********************************************************.**************************99999**** PP

       Sec10  99 ntrekiekyaerlEkelLkeFdkayrkedfermkeiAkvLqefnggasvvqlfvnqhdffidkdkl...deangiesseiwekladpdeapskveeslq 194
                 ++++ ieky+e +E++lL  F+ ayr+++f++++eiA +L++fngg++v+q+f+nqh +fid+ ++   + ++++ +++ ++ l d d++  +++e   
  CCD26004.2 223 EVTKLIEKYSELMENDLLAHFNSAYRENNFNQLNEIALILNHFNGGVNVIQSFINQHSYFIDTAQIdfdETTETFLDEKLKNRLLDQDSHGVIYDEAII 321
                 *******************************************************************9777888999********************** PP

       Sec10 195 alfseiretvkeeaeiikrVF.pnpekVmqtFlqrvfaqviqqrlealLdkassisqlayLraLhslysstlkLvkdLkeylsteeidgssalsalLdq 292
                 ++++ei++++k+e++i+krVF + + +V+q F+qr+faq+i++r e  L+ + s+s+lay+r+Lh lys ++++vkdL e+++  eid+++ l ++++q
  CCD26004.2 322 KILDEIETVIKNESKIVKRVFeDRAPHVIQLFIQRIFAQKIEPRFELSLNASLSFSNLAYVRTLHGLYSILGQFVKDLSEFFQLLEIDKDNVLTNTVEQ 420
                 *********************9999***************************************************************9999******* PP

       Sec10 293 sveelFvpyleg.dsYlerEkksLeelyaellskFttlheqsasakslknkvkkklatsfka..slsasklaassktkqinraasstlskskkr..... 383
                 ++ ++F++yl++ ++Y+e Ek+sLe+++ e++ kF++ he++++++sl+nk +k+++ +  +   l+++++ ++s+++q n++ +++l++++ +     
  CCD26004.2 421 CYSDFFSRYLYDrSKYFEIEKQSLESILLEKTAKFNSNHEKEIRSRSLLNKFNKNIENNTYEfnDLTGTTNNSRSRLSQLNSFLKNHLDRDHLSlsran 519
                 *************************************************999999987765411566***************************66666 PP

       Sec10 384 ...aelketaats.................akaaknedeleeedsllslevaesllkwaaeslgRaveLsspsevpkaveallelLlsalgkeYvetaL 462
                             +                 + ++k+++  +  d+++sl+ ++s+lk+ +es++R++eL+   +    +++l+++++  ++ +Yve  L
  CCD26004.2 520 tlnF--------NnyddndinnsninmtpsNITSKDNIFQDAYDEEFSLTNVDSMLKCIVESVARVMELI--PNKDVFTFELVDIMFMGIIGTYVEISL 608
                 4440........33444466666777777655667777788899**************************..455789********************* PP

       Sec10 463 daalaaltaqeiaektevpdlsflevvrsvdliisllqvyiktillpllsdspdirremvkeknsflsrlEekvnaglqktidvvvgeveyllskqkkn 561
                 + a++ +++++i+++++ ++l+fl+++++ ++i+sl++  ik i+lpll++sp+ ++++++ +n++++r E  +n++l+++i+v  +++++ lskqkk+
  CCD26004.2 609 ELAYSHICQIDISKESD-INLKFLKYISTSTSILSLISTSIKAIFLPLLNNSPETKKQIIELTNKQIKRSELLINTILEEIIQVYDSKFSHSLSKQKKK 706
                 *****************.9******************************************************************************** PP

       Sec10 562 DFrpknddlamerqpTeaCkeivefLssvhsalkeslsgsnlesflteiGlrlhklLleHlkkftvsseGGlmltkDlneYqdavksfkipelsekFel 660
                 DF pk++dl +  q+T +++eiv +L+s++s+ +++l+++nle fl  iG  l++lLl H+ kf+vss GG+++tkD++ Yq+++++++ip+l+ekF++
  CCD26004.2 707 DFVPKSQDLLD--QDTLPAIEIVSLLNSLYSQSSQYLKKKNLEGFLNAIGEDLYNLLLAHYAKFQVSSIGGIIVTKDIIGYQNTIEEWRIPNLLEKFAT 803
                 **********9..************************************************************************************** PP

       Sec10 661 LrelgnlfiVqpevlkslvregalakldrelireyiqrReDykke 705
                 Lrel+nlf+Vqp  l sl+reg+la++++e i +yi++ReD++ e
  CCD26004.2 804 LRELANLFTVQPVLLDSLTREGHLADISKEVISNYIANREDFNHE 848
                 *******************************************77 PP

>> COG2  COG (conserved oligomeric Golgi) complex component, COG2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.2   2.7e-05      0.24      14     104 ..      73     164 ..      26     187 .. 0.91
   2 ?    0.3   0.1     0.074   6.7e+02      34      57 ..     227     252 ..     217     285 .. 0.86
   3 ?   -1.6   0.3       0.3   2.7e+03      13      58 ..     376     426 ..     365     429 .. 0.74
   4 ?   -3.7   0.0       1.4   1.2e+04      64      83 ..     560     579 ..     555     589 .. 0.52

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 2.7e-05
        COG2  14 dpdqFvse.lrhgvpLeslrrdLeaylkllekellelvnedyadFvslSghLvglqeeleevesplaaarkkvesvreklsereeeveskle 104
                 dp  ++ + +++ ++L++l +d e+  ++l +++++      ++ + lS+ L+ + ++ ++++ +l+++++ v+ + +kl++++++ +  ++
  CCD26004.2  73 DPKPYIRTfESTLKELKNLNEDSEKRKNQLADQVASQELLHSHNILGLSSTLKNMVSQYDYLDNQLTTVTQVVSPLGDKLENAIRKKKTYIN 164
                 899999999999***********************998888999*************************************99988666665 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.074
        COG2  34 dLeaylkllekellelvnedyad..F 57 
                  +e+y++l+e++ll + n+ y++  F
  CCD26004.2 227 LIEKYSELMENDLLAHFNSAYREnnF 252
                 5799**************99987544 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.3
        COG2  13 FdpdqFvse.lrhgvpLeslrrdLeaylklle....kellelvnedyadFv 58 
                 F+  ++v +    +  L +  +dL ++ +lle    + l + v++ y dF+
  CCD26004.2 376 FSNLAYVRTlHGLYSILGQFVKDLSEFFQLLEidkdNVLTNTVEQCYSDFF 426
                 777888888666777788888899888888853322557777888888876 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 1.4
        COG2  64 Lvglqeeleevesplaaark 83 
                 L+ +++ l+++  ++a++++
  CCD26004.2 560 LTNVDSMLKCIVESVARVME 579
                 33444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1629  (0.0908584); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.28s 00:00:01.05 Elapsed: 00:00:00.47
# Mc/sec: 5525.04
//
Query:       CCD26005.2  [L=241]
Description: hypothetical protein NDAI_0G02300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-18   66.7   0.0    1.8e-17   63.9   0.0    2.0  1  PseudoU_synth_2  RNA pseudouridylate synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   9.8e-22   1.8e-17       1     159 [.      10     161 ..      10     162 .. 0.86

  Alignments for each domain:
  == domain 1  score: 63.9 bits;  conditional E-value: 9.8e-22
  PseudoU_synth_2   1 dlvvvnKPagvpvqpeak............dgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakaf.....eerkvr 77 
                      ++++vnKP gv +qp++             +     +e  +t sr+ +  ++l++v+RLD +++G +llAk+++aa+ +++ +     +  +++
       CCD26005.2  10 NYIIVNKPFGVFSQPGDLgawflknpnskaGPRVLLDEVPNTFSRNVQSFDKLRTVNRLDACVTGGMLLAKNKNAAEMFSRNLrkggnSGFQIS 103
                      79************************999877788889999999999999*********************************999988899** PP

  PseudoU_synth_2  78 KkYlalvfgapeeeegaikkkiskdtekqegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                      ++Y+al++ + + + +               a r++ +    + v+++k l+++         ++ lel+tG+khQ+R++la
       CCD26005.2 104 RRYVALLDTNQIDDFQ---------------ALRESGTMISDDMVSKYKRLDEQ---------CILLELVTGKKHQLRKQLA 161
                      *******833333333...............33444444777777777777777.........*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1836.52
//
Query:       CCD26006.2  [L=294]
Description: hypothetical protein NDAI_0G02310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-22   79.0   2.8    4.8e-22   78.0   2.8    1.5  1  DUP       DUP family


Domain annotation for each model (and alignments):
>> DUP  DUP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   2.8   2.7e-26   4.8e-22       6      99 ..      90     182 ..      84     186 .. 0.77

  Alignments for each domain:
  == domain 1  score: 78.0 bits;  conditional E-value: 2.7e-26
         DUP   6 lrllvlvllilllvalvlqnlra.fsksvsdekfkikllseiikekpavdakeWdtIaknmNqYLfenklwktpyfFydgedCeefFrklilepl 99 
                 + +++++ll++l++  + +n+++       +++ k+kll++ii++kp+  +++Wd+Ia++mN+YL+ ++ ++tp fFydg++ +  Fr+++le  
  CCD26006.2  90 FIFSLFSLLFFLIL--FAVNCERdHKLYKLNSHNKMKLLMDIIENKPNASVQSWDIIARHMNKYLYLEGYYNTPNFFYDGNEVYYWFRRFVLEAR 182
                 33444444444444..444444403334446677*********************************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       926  (0.0516482); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2307.21
//
Query:       CCD26007.2  [L=463]
Description: hypothetical protein NDAI_0G02320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.6e-52  176.8   0.0    4.8e-52  175.9   0.0    1.5  1  Peptidase_M16    Insulinase (Peptidase family M16)
    2.2e-34  119.0   0.0    5.8e-33  114.5   0.0    2.3  3  Peptidase_M16_C  Peptidase M16 inactive domain


Domain annotation for each model (and alignments):
>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   0.0   5.4e-56   4.8e-52       2     148 ..      38     184 ..      37     185 .. 0.99

  Alignments for each domain:
  == domain 1  score: 175.9 bits;  conditional E-value: 5.4e-56
                    EEEEE-TSSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSCHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHS CS
  Peptidase_M16   2 valesdppaktsavglvvdaGSryepkdlnGlAHllehmafkgTkkypsnklaeeleklGgslnAttsrentvYyvevlskdlekaldvladvfka 97 
                    va+e  p++++++vg++vdaGSr+e++++nG+AH+leh+afkgTk++++++++ e+e++G +lnA+tsrentvYy+++l++d++ka+d+l+d+++ 
     CCD26007.2  38 VATEWMPNTSSATVGIFVDAGSRAENEKNNGTAHFLEHLAFKGTKNRSQKGIELEIENIGSHLNAYTSRENTVYYAKSLKEDIPKAVDILSDILTR 133
                    899999****************************************************************************************** PP

                    BTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHTTTSGGGSHSS-T CS
  Peptidase_M16  98 plleesevererkvvekeveavdaepekvveenlhaaayrekalgrsllgp 148
                    + l+++++erer+v+ +e e+vd+ +++vv+++lh+ +y++++lgr++lgp
     CCD26007.2 134 SVLDPEAIERERDVIIRESEEVDKMYDEVVFDHLHEVTYKDQPLGRTILGP 184
                    ************************************************998 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.019   1.7e+02      91     167 ..      62     135 ..      11     147 .. 0.71
   2 !  114.5   0.0   6.4e-37   5.8e-33       1     183 []     190     381 ..     190     381 .. 0.95
   3 ?   -3.5   0.0      0.99   8.9e+03       2      29 ..     422     449 ..     421     459 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.019
                      CTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTS...ESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHH CS
  Peptidase_M16_C  91 endeddlalavlntlLgggmesrLytnlrekegl...aysvsafndsyrdsglfgisatadpenveevvevilkelrklk 167
                      en++++   + l++l   g      t+ r ++g+   +++++++++ y+    ++ +a++ +e++ ++v+ + + l + +
       CCD26007.2  62 ENEKNNGTAHFLEHLAFKG------TKNRSQKGIeleIENIGSHLNAYTSRENTVYYAKSLKEDIPKAVDILSDILTRSV 135
                      5566666666666666666......33344555555799*****999**********************99988877766 PP

  == domain 2  score: 114.5 bits;  conditional E-value: 6.4e-37
                      CH-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSHCSGSCTSSSSSGGGSSEEEEEEEESSSSSEEEEEEEEEECTCTHT CS
  Peptidase_M16_C   1 sltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaskappakptgepltpatlkkppvvlkkldeeqahlslafegpskende 94 
                      s+tr+dl +++  +Y++++mvla +G vdhe+lv+++++ fg+l++s  +p +  +++++ + ++ ++ +++++  +++h+++ +eg+s+ + +
       CCD26007.2 190 SITRDDLSKYITDNYKGDRMVLAGAGAVDHEKLVEYAQRCFGHLGKST-SPVPLGSPRGPLPVFNRGERLIEEKTLPTTHIAISLEGVSW-SAP 281
                      69*******************************************998.667777777777788888888888888**************.*** PP

                      THHHHHHHHHHHHSS.........TTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECT..THHHHHHHHHHHHHHHHHHTS-HHHHH CS
  Peptidase_M16_C  95 ddlalavlntlLggg.........mesrLytnlrekeglaysvsafndsyrdsglfgisatadpe..nveevvevilkelrklkkeglteeele 177
                      d++     + ++g++           s+L  +  +k  la s ++f++sy dsgl+g+++ +d++  ++ ++++ i ke+r++k+  +++ e++
       CCD26007.2 282 DYFIGLATQAIIGNWdralgagtnSPSPLAVAASNKGILANSYMSFSTSYADSGLWGMYLVLDSKehDAKKIIDEIIKEWRRIKSGNISDVEVN 375
                      **********************************99999**************************999999*********************** PP

                      HHHHHH CS
  Peptidase_M16_C 178 raknql 183
                      rak+ql
       CCD26007.2 376 RAKAQL 381
                      ****97 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 0.99
                      H-HHHHHHHHHHHSSGGGEEEEEEESS- CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvd 29 
                      +t++d+ ++ +   + + +  ++ G+++
       CCD26007.2 422 ITKDDIVKWANYRLQDKPVSMVALGNIK 449
                      7888888888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3239.80
//
Query:       CCD26008.2  [L=487]
Description: hypothetical protein NDAI_0G02330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-14   53.3   0.0    4.9e-14   51.9   0.0    1.8  1  BHD_1     Rad4 beta-hairpin domain 1
    3.7e-13   49.7   0.2    9.4e-13   48.4   0.2    1.7  1  BHD_3     Rad4 beta-hairpin domain 3
    4.9e-08   32.8   0.3    1.3e-07   31.4   0.3    1.7  1  Rad4      Rad4 transglutaminase-like domain
      0.002   19.0   0.3     0.0056   17.6   0.3    1.7  1  BHD_2     Rad4 beta-hairpin domain 2


Domain annotation for each model (and alignments):
>> BHD_1  Rad4 beta-hairpin domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   1.1e-17   4.9e-14       1      51 []     225     281 ..     225     281 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 1.1e-17
       BHD_1   1 kepmPenlqdfKnhplYvLerhLkrnEvlhpdakpvgvfkk......kepVYrRsdV 51 
                 ++ +P++l+d K++ ++++++ Lk  E++   a pvg+f +      ke +Y+R+dV
  CCD26008.2 225 NYTLPKTLADVKRSNNFIIPSLLKSTEAIQDRASPVGTFHYgqqmklKEHIYWRKDV 281
                 6789***********************************557777789********9 PP

>> BHD_3  Rad4 beta-hairpin domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.2   2.1e-16   9.4e-13       3      74 ..     361     445 ..     360     446 .. 0.79

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 2.1e-16
                 --TTS-EE-SSGGGS-TTEEEE..........E-...TTHHHHHHHCT---EEEEEEEEE-SS-EE..EEEEEEEEEGGGHHHHH CS
       BHD_3   3 kNeygnieifkpsmlPegavhi..........sl...kgaakaakklgidyapAvvGFefkgrrgkgiPvidGivVaeedeeavl 74 
                 kN++++iei+++   P+g+ +i          s    +++++   k  i y ++v GF+fk+++g+++Pv++ i+V+e+d+e+++
  CCD26008.2 361 KNKFNHIEIYSEDIKPDGFKLIslneptdikgSIhrfNRVQRKNSKDIIYYLDVVSGFDFKQKKGSAVPVVESILVNENDYEKIQ 445
                 8*********************6665555555223334555555555788***********766777***************985 PP

>> Rad4  Rad4 transglutaminase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.3   2.9e-11   1.3e-07      28     133 ..      78     203 ..      63     220 .. 0.79

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 2.9e-11
                 HHHHHTTS-SEEEEEEETTTTEEEEE.ESSSS-EE......SS--TTS--.........TGGGS----EEEEE-T.TS-EEE-HHHH-T.TCCCCHGGG CS
        Rad4  28 lkdkdlpypvyWvEvfspekkkwisv.dplvgsti......ekkeilepl.........aekakqvlsYVvAfds.dgsakDVTrRYlsdysnsktkkl 109
                 + d dl +p++W+E + p+++  i + dp+v+  i      +k ++ ep          ++  +qv+ YVv++ds  g ++DV+ RY+ +  ++++   
  CCD26008.2  78 RFDTDLLKPNFWIELVLPYATDEIYImDPVVL--IgekemvKKYKRSEPVlnlyptwsfKTTVNQVFKYVVSIDSvTGLLQDVSARYVPNLCYAYFDNS 174
                 557899**********9988877765599986..5568888566666665666777*9999999**********944668**********999999988 PP

                 SGG.....GSHHHHHHHHHHHHHH--S-- CS
        Rad4 110 rve.....kskeekkWfesvlrplekrnk 133
                   +     k++    +f++v+ +++++nk
  CCD26008.2 175 VWSpylqsKNYCAFIFFRKVIDTINRNNK 203
                 88877765555566677888888888877 PP

>> BHD_2  Rad4 beta-hairpin domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.3   1.2e-06    0.0056       1      58 [.     285     334 ..     285     338 .. 0.80

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.2e-06
       BHD_2   1 rSaerWyrlGReVkpgelPvKrvksraktarkkredekkeeeeeeeegevpLYgewQT 58 
                 +S++ W  lGR+Vk +  P+K  k   +++rk+ + e+         +  +LY+++QT
  CCD26008.2 285 KSRQHWAILGRSVKSDVKPLKQKKYIPMKNRKRPKLEM--------YEIKELYSFEQT 334
                 89**********************98888887754443........334457777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 3482.90
//
Query:       CCD26009.2  [L=255]
Description: hypothetical protein NDAI_0G02340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.029   14.1   1.0      0.055   13.2   1.0    1.4  1  tRNA_bind_2  Possible tRNA binding domain
       0.38   10.6   0.1       0.38   10.6   0.1    1.7  2  TMEM51       Transmembrane protein 51


Domain annotation for each model (and alignments):
>> tRNA_bind_2  Possible tRNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   1.0   6.1e-06     0.055     136     223 ..     139     224 ..     129     236 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 6.1e-06
                  HHHH.HHHHHHHHHHH-HHHHHHHHH-XXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  tRNA_bind_2 136 lalF.vkiirkvskalreilekaieeelpkekeeekaaeaeeeeakekel.kpleesleeeLeeaakeveeklkekqrelidsldlekYa 223
                  lalF ++ i  ++ a++ +l+++i++ l++e+++e+ + + e+e++ ++l  + +e++ e++ee+ + +++++     ++ +++++++Y+
   CCD26009.2 139 LALFtNDFINAITCAFSGVLDDEINRYLKEENDNEEVSPELESETDGEDLaIDEQEDIIEDVEESVTTIRNQE----ISKEEQEKMKNYE 224
                  6777357899999******************998655544444444444414555666677777666665543....3333344444443 PP

>> TMEM51  Transmembrane protein 51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   4.2e-05      0.38      51      93 ..      43      86 ..      23     109 .. 0.80
   2 ?   -1.5   0.5       0.2   1.8e+03     108     149 ..     208     218 ..     166     244 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 4.2e-05
      TMEM51 51 sgkeekksktssvAyVLvGaGvalLlLsicL.girdkkrarqee 93
                +  +++k+  ssv + +vG Gv  + L++ L ++++k +ar++ 
  CCD26009.2 43 DWLSNSKNEYSSVTFNMVGKGVKNIALTVDLfSVKNKSKARHSV 86
                4445557899******************97659******99764 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.2
      TMEM51 108 eeqeeeesaeeaasryavPsYeEvvtsgeypvrqsnlrests 149
                 ++qe ++                               e++ 
  CCD26009.2 208 RNQEISK-------------------------------EEQE 218
                 1111111...............................1112 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1419  (0.0791455); expected 358.6 (0.02)
Passed bias filter:                      628  (0.0350271); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.28s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1852.41
//
Query:       CCD26010.2  [L=673]
Description: hypothetical protein NDAI_0G02350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-81  272.4   0.0    6.2e-81  272.1   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    1.6e-21   77.0   0.0    3.2e-21   76.1   0.0    1.5  1  AMP-binding_C  AMP-binding enzyme C-terminal domain
    2.9e-19   68.7   0.2    6.2e-19   67.7   0.2    1.6  1  ACAS_N         Acetyl-coenzyme A synthetase N-terminus


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.1   0.0     1e-84   6.2e-81       3     422 ..      99     538 ..      97     539 .. 0.86

  Alignments for each domain:
  == domain 1  score: 272.1 bits;  conditional E-value: 1e-84
                  HHHHHSTTSEEEEE....CCSTEEEEHHHHHHHHHHHHHHHHHTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHHHTES CS
  AMP-binding   3 eqaaktpdkvalvd....sgegqtlTYreldervnrlAagLrslGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiledseak 96 
                  ++a  + +k+a+++    + e++ +T+++l ++v+++A+ L+s Gvkkgd+V i+lp+ pe ++++la++++Ga+++++ ++++a  l+  + ds++k
   CCD26010.2  99 RHAFANSNKPAIIYeaddEVENRIITFGQLLRKVSKVASLLKSWGVKKGDVVTIYLPMIPEVIITMLAVVRIGAIHSVIFSGFSASSLRERIIDSKSK 196
                  6777889*********99999***************************************************************************** PP

                  EEE..........ETCTCCC.HHHHHHHHSCC-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.......-TSCCCS-BTTSEEEEEEE--SSSS-EE CS
  AMP-binding  97 vli..........atvdsel.leklleaaakleavklvivldadellkeeelkeeeeseekae.......kpeeeeelkpddlayiiYTSGTTGkPKG 176
                  v+i          +    +   + ++e  +   +v+ v+v+++   ++ +++++++    +++       + +++++++++d+++++YTSG+TG PKG
   CCD26010.2 197 VIItcdeakrggkT----IHtKDIVNESLQGINSVTYVLVYERTHNKTIAMSPTRD---YWWTeevnkqpNYCPPVPCNAEDPLFLLYTSGSTGSPKG 287
                  ***99987654431....23234455556666677777777665544444444333...222134455667888999********************* PP

                  EEEEH.HHHHHHHHHHHHHHC.SCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCC CS
  AMP-binding 177 Vmlsh.rnlvanvaslkletr.fklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvleallesg 271
                  +++++ ++l+ ++ +   + + f++++dd +++  ++ +i+g++++l+++l+ G + ++++ ++a +d ++ ++ ie++k+t+++++P++l+ + + g
   CCD26010.2 288 IVHTTaGYLLGAAITT--R-YvFDIHPDDILFTAGDVGWITGHTYALYGPLSLGTATIIFESTPAyPDYGRYWRIIERYKATHFYVAPTALRLIKKIG 382
                  *****66666665553..4.459999***************************************88888999*********************7743 PP

                  CHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC...EEEEEEEEGGGSSECEECHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE.TTSEE CS
  AMP-binding 272 alkaakkakdlsslrlvllggeplspellrffralfge...evlegYGlTEttgvvtvlpleedkkklgsvGkplpgvevkivDeetgepvp.dgeeG 365
                  + +   +++d sslr++ ++gep+spel+++++++ g+    v ++ ++TE + ++  +      +k+gs+  p+ g+++ ++D+  g  ++ ++++G
   CCD26010.2 383 EAE--ISKYDISSLRVLGSVGEPISPELWKWYHEKIGNkncVVCDTMWQTESGSHLLAPLSGVTPTKPGSATVPFFGIDACLIDPVSGHILEgNDVVG 478
                  344..4567****************************99999**************764445555789***********************846666* PP

                  EEEEE..ETTS-SEBTT-HHHHHHHEEET.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 366 ellvr..gpgvmkgYlkkpeataeafdse.grwlrTGDlgrldedGyleivgRkkdlikl 422
                   l v+   p++++  ++++++  e++ ++ ++++ TGD + +d+dGy++i gR +d++++
   CCD26010.2 479 VLAVKcsWPSMARSVWNNHDRYIETYLKPyPGYYFTGDAAGRDHDGYYWIRGRVDDVVNV 538
                  ***9943469****************976778**************************98 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   5.4e-25   3.2e-21       1      76 []     547     627 ..     547     627 .. 0.91

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 5.4e-25
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---.---.....HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg.sea.....leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E +lv+ + V+ aaVvG+pd+++G+ +vafV l+++ +         +eL+ +vrke+gp+a+pk+v+++++lpktrsGK
     CCD26010.2 547 EIETCLVNDKYVSAAAVVGIPDDLTGQSVVAFVSLQNDnE-IdgpvsFHRELILQVRKEIGPFAAPKAVIIINDLPKTRSGK 627
                    8**********************************64432.23456799********************************9 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.2     1e-22   6.2e-19       1      55 []      40      96 ..      40      96 .. 0.98

  Alignments for each domain:
  == domain 1  score: 67.7 bits;  conditional E-value: 1e-22
                HHHHHHHHHH-HHHHHHHHHCC.S--SB--S-SECSTTTC.T-EESTT-EE-HHHHH CS
      ACAS_N  1 ykelykeSiedpeaFWaeqake.ldWekpfdkvldgskgp.fikWFeGGklNicyNc 55
                y ++y+eSi++pe F++++ake l+W++p++ v +gs ++ +++WF +G+lN++yNc
  CCD26010.2 40 YSQMYRESIDNPELFFDKMAKEfLHWDTPYKAVKSGSLADgDVAWFLNGELNASYNC 96
                899**********************************9999**************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       562  (0.0313459); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4652.48
//
Query:       CCD26011.2  [L=324]
Description: hypothetical protein NDAI_0G02360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-14   52.7   0.0    7.7e-14   51.9   0.0    1.4  1  NUDIX      NUDIX domain
  ------ inclusion threshold ------
       0.12   12.7   0.0       0.26   11.6   0.0    1.6  1  RNA_pol_N  RNA polymerases N / 8 kDa subunit


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   8.6e-18   7.7e-14       2     122 ..      32     182 ..      31     190 .. 0.78

  Alignments for each domain:
  == domain 1  score: 51.9 bits;  conditional E-value: 8.6e-18
                 EEEEEEEEEEETT.SE..EEEEEES..SSSTTT.EESSEEECBTTS.HHHHHHHHHHHHHHSEEE.EEE...EEEEEEEEEEEEEEEEEE......EEE CS
       NUDIX   2 lrravgvvllnek.ge..vLlvrrs..kkpfpg.WelPgGkvepgE.tpeeAArREleEEtGlea.ell...ellgrlhylapydgpygd......ehe 83 
                 +r+av ++l+ ++ ge  vLl++rs   + f+g  +lPgGk +    t+e+ ArRE+eEE+Gl+  +++   ++  +l++  ++  +y +      +  
  CCD26011.2  32 RRAAVLILLFVGNsGElrVLLTKRSrsLRSFSGhVALPGGKADSSTeTFEQIARREAEEEIGLPQdKNVlenRYGMKLETISTEIPCYISqtflsvKPV 130
                 78999999666663779********99999999557*******9777****************998999999888899999999999998555554555 PP

                 EEEEEE...EEECSGCSST.............STTTEEEEEEEEHHHHHHHHTHC CS
       NUDIX  84 ilyvfl...eevegelepn.............denevsevrwvpleellkeklaa 122
                 +++++    +    ++e               +++e+s++  vpl++++k+ +++
  CCD26011.2 131 VCFLYNsefD---QKNEKYtktldaskffgklNPGETSSLFSVPLNDMVKHLFTD 182
                 5566665553...44443344478999999*****************96655544 PP

>> RNA_pol_N  RNA polymerases N / 8 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.9e-05      0.26       4      28 ..     129     153 ..     127     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.9e-05
                 -SS-TTT--B-STHHHHHHHHHHTT CS
   RNA_pol_N   4 PVrCFtCGkvigekweeylellekg 28 
                 PV+CF ++    +k e+y+++l+++
  CCD26011.2 129 PVVCFLYNSEFDQKNEKYTKTLDAS 153
                 *********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       437  (0.0243739); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2442.57
//
Query:       CCD26012.2  [L=501]
Description: hypothetical protein NDAI_0G02370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-31  106.7   0.3    2.2e-30  104.5   0.0    2.1  2  Stb3      Putative Sin3 binding protein


Domain annotation for each model (and alignments):
>> Stb3  Putative Sin3 binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.0   1.2e-34   2.2e-30       2      85 ..      51     128 ..      45     132 .. 0.91
   2 ?   -1.0   0.1       0.1   1.8e+03      21      58 ..     273     310 ..     268     319 .. 0.76

  Alignments for each domain:
  == domain 1  score: 104.5 bits;  conditional E-value: 1.2e-34
        Stb3   2 tpeklakahlpeillekGPlaiRhitaalttsvpgFsklspskaRRlvvaalegradkendvvfekvGWGrWdakkvgeperee 85 
                 tp+     +l e+l+++GPlaiRhit+al++++ +F++ls+sk+RRl+++a++ + dk+n +vfekvGWG+W+a++ +++e+++
  CCD26012.2  51 TPR-----KLSELLMRRGPLAIRHITQALNEDITNFKDLSSSKQRRLIMGAMDDG-DKDNRIVFEKVGWGQWSARQLDDNEDFN 128
                 444.....5666*******************************************.*********************9999876 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.1
        Stb3  21 laiRhitaalttsvpgFsklspskaRRlvvaalegrad 58 
                 l  Rhi  +l ++ ++  + s+sk R  + + + ++ +
  CCD26012.2 273 LMARHIRPKLRNNSRTRRSSSKSKSRPSINKMVPSTVN 310
                 66799999999999999999999999777666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1410  (0.0786435); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3529.39
//
Query:       CCD26013.2  [L=746]
Description: hypothetical protein NDAI_0G02380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-21   76.2   0.8    3.4e-21   74.9   0.8    1.7  1  DUF2415   Uncharacterised protein domain (DUF2415)


Domain annotation for each model (and alignments):
>> DUF2415  Uncharacterised protein domain (DUF2415)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.8   1.9e-25   3.4e-21       1      43 []     388     427 ..     388     427 .. 0.99

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 1.9e-25
     DUF2415   1 GAfRvckFSpesglnDLLvisEhvgrvHlvDlRtgldehqViv 43 
                 GAfRvc+FS  +gl+DLL+isEh+grvH+vD+R ++++hqViv
  CCD26013.2 388 GAFRVCRFS--YGLDDLLFISEHQGRVHVVDTR-NFENHQVIV 427
                 9********..**********************.********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       728  (0.0406046); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 5012.54
//
Query:       CCD26014.2  [L=965]
Description: hypothetical protein NDAI_0G02390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-40  136.2   0.2    7.2e-40  136.2   0.2    3.0  3  Pep3_Vps18    Pep3/Vps18/deep orange family
      9e-07   28.9  31.4    5.7e-06   26.3   5.7    4.1  4  Clathrin      Region in Clathrin and VPS
     0.0001   22.7   1.5     0.0001   22.7   1.5    2.2  2  Vps39_2       Vacuolar sorting protein 39 domain 2
    0.00091   19.1   4.9     0.0017   18.3   4.9    1.4  1  zf-RING_5     zinc-RING finger domain
     0.0058   16.2   1.5      0.011   15.3   1.5    1.4  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
     0.0095   16.8   0.3        2.7    9.0   0.0    3.5  2  WD40          WD domain, G-beta repeat
  ------ inclusion threshold ------
      0.042   14.2   5.6      0.085   13.2   5.6    1.5  1  zf-RING_2     Ring finger domain
       0.15   12.1   3.3       0.34   11.0   3.3    1.6  1  zf-RING_UBOX  RING-type zinc-finger
       0.19   11.6   5.3       0.38   10.6   5.3    1.4  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
       0.32   10.8   7.4       0.73    9.6   7.4    1.6  1  zf-RING_11    RING-like zinc finger


Domain annotation for each model (and alignments):
>> Pep3_Vps18  Pep3/Vps18/deep orange family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       5.2   9.4e+03      78      98 ..      69      89 ..      37     111 .. 0.55
   2 !  136.2   0.2     4e-43   7.2e-40       1     148 [.     265     425 ..     265     426 .. 0.89
   3 ?   -2.6   2.6       2.3   4.2e+03      16      74 ..     476     533 ..     462     573 .. 0.53

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.2
                ---EEEEEEETTTTEEEEEES CS
  Pep3_Vps18 78 gekllglvaDpvkntfWlftn 98
                +ekll+++  p +  +++ tn
  CCD26014.2 69 NEKLLTISLSPNADKLFIKTN 89
                333333333333333333222 PP

  == domain 2  score: 136.2 bits;  conditional E-value: 4e-43
                 EEEEEETT-..........------TTTT-EEEEGGGSS---------EEEEEE-SSEEEEEETTEEEEEETTT--EEEEEE-...-------EEEEEE CS
  Pep3_Vps18   1 giyhgelsl..........satsekvlseakllpypelakkaeessespksiaLTefHillLyedrvvavnrLneevvfeesl...ekesgekllglva 86 
                 gi++g+l+           ++t+ ++l++ak+l + el    ++s+ ++k++++T+fHi+++++ +++++n+L++++vfees+   +++s+ kllgl+a
  CCD26014.2 265 GIVFGDLEPstkakvnqpiEDTKPTILKDAKILLNIEL----SDSKYKIKDVIMTKFHIIIIRGFTITIINQLDNSIVFEESIwdnKDTSSGKLLGLAA 359
                 6777777775444333333444599*************....799***************************************99555555******* PP

                 ETTT..TEEEEEESS-EEEEEEESHHHHHHHHH-XXXXXXXXXXXX...XXXXXXXXXXXXXXXXX CS
  Pep3_Vps18  87 Dpvk..ntfWlftnksifelvvrdEdrdvWklylekgkFdeAlklak..npaqrdqVltaqadalf 148
                 D+++   tfW+f+n++i+e+++++E++ +Wkl+++++kFd Al+l++  n++q+d++l  ++++l+
  CCD26014.2 360 DYSQslPTFWCFSNTNIYEIILNKESNAIWKLLCDQKKFDVALSLKDslNQFQIDSILLYKGEHLL 425
                 *999889********************************************************986 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.3
                 TTTT-EEEEGGGSS---------EEEEEE-SSEEEEEETTEEEEE.ETTT--EEEEEE-- CS
  Pep3_Vps18  16 vlseakllpypelakkaeessespksiaLTefHillLyedrvvav.nrLneevvfeesle 74 
                  +s++k l+   + +k ++++++++ i ++++ i  L+ +++  +  +++++ ++++  +
  CCD26014.2 476 EISSTKNLQIFLT-TKLNHINNKVQGILISSWII-WLFMKELNHIeEKISQSKIQDDITN 533
                 3333333333333.34489999999999999955.5555555555145666666666552 PP

>> Clathrin  Region in Clathrin and VPS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   5.5   2.6e-06    0.0046      46     139 ..     532     624 ..     519     627 .. 0.88
   2 !   26.3   5.7   3.2e-09   5.7e-06      20     115 ..     667     776 ..     651     822 .. 0.86
   3 ?   -1.6   0.6       1.3   2.3e+03       2      71 ..     829     896 ..     828     918 .. 0.54
   4 ?   -1.4   0.2         1   1.9e+03      62      84 ..     933     955 ..     931     963 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.6e-06
                 HHHHHHHHHTT-HHHHHHTTS.S---S-TTHHHHHHHT-SSHHHHHHHHHTTXTHSSHSSXSSSSHCSCHHHHTTTTTXXSHHHHHHHHHHHSSX CS
    Clathrin  46 tallelyakyddpqeleeflk.knnnydlekvaklcekadlyeeavilykkinefkkaisllkklkdfddaieyaakvsnpelwekllealldkk 139
                 t l+e+  k+ +  el++fl+ ++++ d+e++ ++ ++++  +e+++  + i++++++++   + +++ + +++++k ++p+l++k  + ll ++
  CCD26014.2 532 TNLNETKFKTSK--ELQTFLSkNLHHLDKETIYQIISNQNRKNELLYFANLIEDYHDVLDYWITQENWYESLKILVKFNDPNLVYKYSNVLLINS 624
                 678888899997..*******55666**************999*****************955559********************988887665 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 3.2e-09
                 TT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHT.................T-HHHHHHTTSS---.S-TTHHHHHHHT-SSHHHHHHHHHTTXTHS CS
    Clathrin  20 aglleelleyLekvlkedskenpalqtallelyaky.................ddpqeleeflkknnn.ydlekvaklcekadlyeeavilykkinefk 100
                 ++ l +l++y e+     + + p++++ +l++++                    + q + +fl+k++  yd++++++l+ k++ ++ +++ly+ +  ++
  CCD26014.2 667 NYGLFYLKWYIEQTY---NLNVPIIYNTVLYMLIVKdgsiplvsserseqmetYE-QSIINFLTKYHDkYDQDFILRLSLKFKRIKVSIFLYSQLHLYE 761
                 555678999999999...57999*****999999999***********9999855.79******88777****************************** PP

                 SHSSXSSSSHCSCHH CS
    Clathrin 101 kaisllkklkdfdda 115
                 ++i+l+ ++++++ a
  CCD26014.2 762 DSINLALQNNLINLA 776
                 *****8887877765 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 1.3
                 CCCCTTS-CCCCHHHHHCTT-HHHHCHHHCCHHHCHTS--HHHHHHHHHHHHHTT-HHHHHHTTSS---.S CS
    Clathrin   2 ieltdpidlsrvvklfeeaglleelleyLekvlkedskenpalqtallelyakyddpqeleeflkknnn.y 71 
                 +++++ ++++ +   f e+  +  l+  L k l+     ++ +qt+ ++      + +++ e +k++++ y
  CCD26014.2 829 NDSNNLLEIKDLLPFFNEFTTIANLKDELIKSLEVH--SQSMIQTSSAIKKSLILK-KNIKEEIKNFEKrY 896
                 667788888888888888555555555555555333..223344443333333333.44555555555555 PP

  == domain 4  score: -1.4 bits;  conditional E-value: 1
                 HHTTSS---S-TTHHHHHHHT-S CS
    Clathrin  62 eeflkknnnydlekvaklcekad 84 
                  e+l++n++y ++k++k+ ++++
  CCD26014.2 933 KEILNSNDYYLKDKIGKFQKNYQ 955
                 6899************9977766 PP

>> Vps39_2  Vacuolar sorting protein 39 domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       4.1   7.4e+03      28      50 ..     544     565 ..     513     578 .. 0.60
   2 !   22.7   1.5   5.7e-08    0.0001      10     107 ..     834     931 ..     826     933 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.1
     Vps39_2  28 dlesflekalrnslekkreeqvv 50 
                 +l+ fl+k l ++l k+   q++
  CCD26014.2 544 ELQTFLSKNL-HHLDKETIYQII 565
                 4555555555.333333333333 PP

  == domain 2  score: 22.7 bits;  conditional E-value: 5.7e-08
     Vps39_2  10 rldplevLdllPdelplkdlesflekalrnslekkreeqvvkklrka..eklsveeellklrskkvvvteekvCavCkkrlgesvfvvyPngsvvHlgC 106
                  l+    L +  + +++++l++ l k+l  +++ +++ q  + ++k+   k++++ee  + +++  +++  k C+ C+k l+++ f v+P ++  H+ C
  CCD26014.2 834 LLEIKDLLPFFNEFTTIANLKDELIKSL--EVHSQSMIQTSSAIKKSliLKKNIKEEIKNFEKRYQILEPGKSCNSCHKFLQSRKFLVFPCDHCFHTDC 930
                 4555566667777788889999999999..5555555555555655511456778888999999999******************************** PP

     Vps39_2 107 a 107
                  
  CCD26014.2 931 L 931
                 6 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   4.9   9.6e-07    0.0017       2      33 ..     905     935 ..     904     946 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 9.6e-07
   zf-RING_5   2 CnkCfeklskeekfyltsCgHifCekClkkll 33 
                 Cn+C++ l  ++kf + +C H f+ +Cl k+ 
  CCD26014.2 905 CNSCHKFL-QSRKFLVFPCDHCFHTDCLIKEI 935
                 ********.*******************9875 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   1.5   6.2e-06     0.011       3      36 ..     901     934 ..     899     942 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.2e-06
  Zn_ribbon_17   3 llksCayCelavkgrvvlcgvCeHvlHasCarew 36 
                   + ksC+ C+  ++ r +l   C H  H++C+ ++
    CCD26014.2 901 PGKSCNSCHKFLQSRKFLVFPCDHCFHTDCLIKE 934
                   5699**************************9776 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.061   1.1e+02      13      34 ..     128     148 ..     116     152 .. 0.75
   2 !    9.0   0.0    0.0015       2.7      13      38 .]     178     202 ..     149     202 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.061
                 EEEEEEETTSSEEEEEETTSEE CS
        WD40  13 vtslafspdgawlasGsdDgtv 34 
                 ++++ +  + +  ++Gs Dgt+
  CCD26014.2 128 IRAIEWINNDTI-ICGSTDGTI 148
                 777756666565.58*99***9 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0015
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                 + ++ ++ ++ ++asG   gt++iW+
  CCD26014.2 178 IDGILYHNEKLLIASGN-QGTIKIWK 202
                 33444666666677777.*******6 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   5.6   4.7e-05     0.085       2      35 ..     904     937 ..     903     940 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.7e-05
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreCler.wlr 35 
                 +C  C  ++ ++++ l+ pC H+fh +Cl + +l+
  CCD26014.2 904 SCNSC-HKFLQSRKFLVFPCDHCFHTDCLIKeILN 937
                 79999.5777778888889*********8552554 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   3.3   0.00019      0.34       3      33 ..     907     940 ..     905     950 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
  zf-RING_UBOX   3 IClelftdP..lvl.pCGHtFCreCl.welsksle 33 
                    C   ++    l + pC H+F+ +Cl +e+ +s++
    CCD26014.2 907 SCHKFLQSRkfL-VfPCDHCFHTDCLiKEILNSND 940
                   566666533323.449**********744444443 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   5.3   0.00021      0.38       2      31 ..     905     936 ..     904     940 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00021
  zf-C3HC4_2   2 CpiCldmlkdp.svvtpCgHvfCqkCilr.sL 31 
                 C  C  +l+     v+pC H f+ +C+ +  L
  CCD26014.2 905 CNSCHKFLQSRkFLVFPCDHCFHTDCLIKeIL 936
                 8889999986515677***********99444 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.4    0.0004      0.73      11      29 .]     913     931 ..     908     931 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0004
  zf-RING_11  11 pgqalfilpCsHtFHfkCI 29 
                 ++ +  + pC H+FH +C+
  CCD26014.2 913 QSRKFLVFPCDHCFHTDCL 931
                 55667788**********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (965 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1317  (0.0734564); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.47
# Mc/sec: 6134.72
//
Query:       CCD26015.2  [L=67]
Description: hypothetical protein NDAI_0G02400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-14   52.7   0.3    2.7e-14   52.6   0.3    1.0  1  LSM       LSM domain
  ------ inclusion threshold ------
       0.01   15.9   0.1       0.01   15.9   0.1    1.1  1  LSM14     Scd6-like Sm domain
      0.081   13.1   0.0        0.1   12.8   0.0    1.2  1  SM-ATX    Ataxin 2 SM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.3   4.5e-18   2.7e-14       2      59 ..       8      64 ..       7      66 .. 0.97

  Alignments for each domain:
  == domain 1  score: 52.6 bits;  conditional E-value: 4.5e-18
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEEEEEEG CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklglvliRG 59
                +l++ ++++v vel  g+++rG+L++ +++mN++L+dv++t +d+ + ++++ v++RG
  CCD26015.2  8 LLNEAQGHIVSVELATGETYRGKLIESEDNMNIQLRDVIVTGTDS-KMTRMDHVFVRG 64
                799******************************************.***********9 PP

>> LSM14  Scd6-like Sm domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   0.1   1.7e-06      0.01       4      49 ..      14      58 ..      11      67 .] 0.87

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 1.7e-06
       LSM14  4 GskislisksdirYeGilceinledstiaLqnvrsfGtegrkdneq 49
                G  +s++  ++  Y G+l e + ++ +i L++v   Gt+ + ++ +
  CCD26015.2 14 GHIVSVELATGETYRGKLIESE-DNMNIQLRDVIVTGTDSKMTRMD 58
                889***************9976.99**************9876655 PP

>> SM-ATX  Ataxin 2 SM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   1.7e-05       0.1       7      51 ..       8      50 ..       5      60 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.7e-05
                HHHTTTTSEEEEEETTS-EEEEEEEEE-T..T--EEEEEEEETTS CS
      SM-ATX  7 lltslvGkevevtvknGevyeGifstvslekdfsvvLkmarkvkk 51
                ll+   G+ v+v++  Ge+y+G +  +    ++++ L+ + ++ +
  CCD26015.2  8 LLNEAQGHIVSVELATGETYRGKLIESED--NMNIQLRDVIVTGT 50
                788899****************9988888..88888887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       326  (0.0181828); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 502.51
//
Query:       CCD26016.2  [L=111]
Description: hypothetical protein NDAI_0G02410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1373  (0.0765798); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 820.03
//
Query:       CCD26017.2  [L=307]
Description: hypothetical protein NDAI_0G02420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-67  226.9   0.2    1.8e-67  226.4   0.2    1.2  1  Spermine_synth   Spermine/spermidine synthase domain
    1.2e-22   79.6   0.0    2.1e-22   78.8   0.0    1.4  1  Spermine_synt_N  Spermidine synthase tetramerisation domain
    0.00067   19.5   0.0     0.0011   18.8   0.0    1.4  1  Methyltransf_31  Methyltransferase domain
     0.0065   17.1   0.1       0.15   12.8   0.0    2.3  2  Methyltransf_25  Methyltransferase domain
  ------ inclusion threshold ------
      0.051   14.3   0.0       0.13   13.1   0.0    1.6  1  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Spermine_synth  Spermine/spermidine synthase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.4   0.2   5.1e-71   1.8e-67       1     181 [.      81     265 ..      81     272 .. 0.98

  Alignments for each domain:
  == domain 1  score: 226.4 bits;  conditional E-value: 5.1e-71
                     THHHHHHHHHHHHCCSSST-EEEEESSTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHSHHHHTTCGGCTTEEEEESTCHHHHCTCSS.... CS
  Spermine_synth   1 efaykemiahvplmlhknpkevLiiGGgDGgvlrevvkhntvekitlvdiDqkvidfskkflpslaisafndarvklvlgdgfkflkayek.... 91 
                     efay+emi h+p+ lhknpk+vL+iGGgDGgvlrevvkh++++++tlv+iD+ vi++skk+l +++   f++++v++ l+dgfk+lk++ +    
      CCD26017.2  81 EFAYQEMISHIPMYLHKNPKKVLVIGGGDGGVLREVVKHDCIKSATLVEIDKTVIELSKKYLLEMSTA-FDHPKVNVELCDGFKYLKQVRDweyn 174
                     79*****************************************************************9.********************999999 PP

                     .-EEEEEEECCSTTCSSCGCSSHHHHHHHHHTEEEEEEEEEEE.EETTTCHHHHHHHHHHHHTTSSCEEEEEEEETTTSCSCEEEEEEEESS CS
  Spermine_synth  92 .kfdvvivdsldpvgpaenlFskeffdllkkvlkedGviilqa.ekpelekelvinvdksgkqvfalqvepsavlvPtylsgminfvveskk 181
                      kfdv+i+ds+dp+gpae++F++e+f+ll  +lk+dG++i+qa e+++l +++++++ k++k+vf+ ++++++++vP+y+sg+++++v+sk+
      CCD26017.2 175 dKFDVIITDSSDPEGPAEAFFQREYFQLLQGALKDDGILIAQAsENVWLDLKYLTKLIKTAKSVFP-NTNYCYTMVPSYTSGQLGLIVCSKQ 265
                     9*****************************************************************.***********************98 PP

>> Spermine_synt_N  Spermidine synthase tetramerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   5.8e-26   2.1e-22       1      53 []      23      78 ..      23      78 .. 0.99

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 5.8e-26
                     EEEEEEEE...TTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEET CS
  Spermine_synt_N  1 gWfteisd...pglalelkVekvLyeekSeyQdieifesktfGkvLvLDgvvqltE 53
                     gWf+ei+d   pg+a+++kV+++L++ +S++Qdi++f+s+++G vLvLDg vq+tE
       CCD26017.2 23 GWFREINDkcfPGQAFAIKVSEILHTSQSDFQDILVFQSESYGVVLVLDGIVQCTE 78
                     7******************************************************9 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.1e-07    0.0011       5     114 ..     100     227 ..      96     268 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 3.1e-07
  Methyltransf_31   5 lrvlDlGCGtGeltfelaeelgpkaevvGiDiseeaielAre..naqklgld..nveFeqgdiee.leklled....ekfDlilsnevl....n 85 
                      ++vl +G G G  + e  +  + k   ++++i++++iel+++     +  +d   v++e +d ++ l++ + d    +kfD+i++++      +
       CCD26017.2 100 KKVLVIGGGDGGVLREVVKHDCIK-SATLVEIDKTVIELSKKylLEMSTAFDhpKVNVELCDGFKyLKQ-VRDweynDKFDVIITDSSDpegpA 191
                      677778888888888888755543.358999999*******98744556666779999999*9**8886.6668889*********66677779 PP

  Methyltransf_31  86 aladpdkileeiervlkpggilliedpr.......l 114
                         ++ ++++ ++ +lk++gil+++           
       CCD26017.2 192 EAFFQREYFQLLQGALKDDGILIAQASEnvwldlkY 227
                      99*********************9887754433333 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.091   3.3e+02      50      90 ..      48      88 ..      38      92 .. 0.75
   2 !   12.8   0.0   4.2e-05      0.15       1      70 [.     102     182 ..     102     211 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.091
                     EEESBCCG.BSSSTTTEEEEEEESTGGGSSHHHHHHHHHHHH CS
  Methyltransf_25 50 fvqgdaed.lpfedgsfDlvvssgalhhlsdedlekalkeia 90
                       q d++d l f+++s+ +v++  ++  ++++d e a++e+ 
       CCD26017.2 48 TSQSDFQDiLVFQSESYGVVLVLDGIVQCTERD-EFAYQEMI 88
                     568899995679**********88866656555.55666665 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.2e-05
                      EEEET-TTSHHHHHHHCTST.SSEEEEEESSHHHHHHHHHHHHH.....TTTTEEEEESBC.......CGBSSSTTTEEEEEE CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlg.kakvtgvDiseemleaareraee.....eglnvefvqgda.......edlpfedgsfDlvvs 70 
                      vL +G G G +++++ k+    ++ t v+i+++ +e  ++ + e     ++++v+++ +d        +d++++d +fD+++ 
       CCD26017.2 102 VLVIGGGDGGVLREVVKH-DcIKSATLVEIDKTVIELSKKYLLEmstafDHPKVNVELCDGfkylkqvRDWEYND-KFDVIIT 182
                      899*************99.44788999999999999888777665444434466666655532322225566655.9999997 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   3.5e-05      0.13       1      71 [.     103     181 ..     103     185 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.5e-05
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakre.nnnnnnvelealdlldldgg.......ssfDlvv 71 
                      L iG+G+G +lr++ ++   ++ t v+i++ +ie  k+ l + + + ++ +v++e +d ++  ++       ++fD+++
       CCD26017.2 103 LVIGGGDGGVLREVVKHDCIKSATLVEIDKTVIELSKKYLLEMStAFDHPKVNVELCDGFKYLKQvrdweynDKFDVII 181
                      569**************9888999*********66666655544044555666666666655555999999999**998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       514  (0.0286686); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.39
# Mc/sec: 2336.65
//
Query:       CCD26018.2  [L=267]
Description: hypothetical protein NDAI_0G02430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.032   13.9   4.8       0.48   10.0   4.8    2.5  1  DUF4477   Domain of unknown function (DUF4477)


Domain annotation for each model (and alignments):
>> DUF4477  Domain of unknown function (DUF4477)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.8   2.7e-05      0.48      44     177 ..      16     145 ..       4     149 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 2.7e-05
     DUF4477  44 ke...eleteaallsrllyrlknkfrnhkgfralkkveqaLkrlknmdLekeledlksllpkkeeseeekelslPsrpvlEyvlvrllGfaklllrild 139
                 k+   +l++e+++l+ l +r+kn++r +  ++ + ++++   ++ ++ +e+ +++ +   + ++    +++ s   r+    v++rl  + + ++  + 
  CCD26018.2  16 KDlylKLHQEFRILHLLYHRNKNQHRLSIWWKRFNMLKRNCAQVIEL-IEYHYKQPEYNGK-MT----SSSSSKSKRQKQKIVIIRLYRLIHSMFSKRY 108
                 445578*******************************9866655544.4455544444433.22....233334468888999*************999 PP

     DUF4477 140 lckkafllsvkhlrlgefiklntvllallsrlwvlsrg 177
                 l+k    +    + lg+f++l +vl++ll+r+  ++ +
  CCD26018.2 109 LSKMYYDF-NGIIALGQFVTLGVVLVGLLGRIYSIYLE 145
                 99877775.689********************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2530  (0.141112); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 2170.62
//
Query:       CCD26019.2  [L=877]
Description: hypothetical protein NDAI_0G02440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   5.7e-151  502.7   5.2   7.5e-151  502.3   5.2    1.1  1  Glyco_hydro81C  Glycosyl hydrolase family 81 C-terminal domai
    8.6e-94  314.3   3.3    1.3e-93  313.7   3.3    1.3  1  Glyco_hydro_81  Glycosyl hydrolase family 81 N-terminal domai


Domain annotation for each model (and alignments):
>> Glyco_hydro81C  Glycosyl hydrolase family 81 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  502.3   5.2  8.4e-155  7.5e-151       2     349 .]     518     870 ..     517     870 .. 0.99

  Alignments for each domain:
  == domain 1  score: 502.3 bits;  conditional E-value: 8.4e-155
  Glyco_hydro81C   2 lseealkaiaeaaekelkqdlsaesnldsmYfsGKalakfatlvyvvkellkdeelakaalkkLkealerflenkqklplvYdekwkGvvssagy 96 
                     +++e l+ i++aa +e ++d+ +esnldsmYfsGK+lak+a+++yv + +l+d+++++++l +Lk+a++rf++n+q lpl+Yd+ w+G++ss   
      CCD26019.2 518 YTPEILQSIHKAAINESQNDILTESNLDSMYFSGKILAKYAWILYVSHFILHDSNITNRLLINLKKAIQRFISNTQILPLMYDTIWGGIISSG-- 610
                     677899**************************************************************************************9.. PP

  Glyco_hydro81C  97 ktdsgaDFGntlyNDHhfHygYfvyaaaviakldps.........wleknkewvntLvrDvanpseedeyfpvsRsfDwyhgHSwakGlfesadG 182
                       +s++DFGn++yNDHhfHy+Y+v++a++ia +d++         wl +nk+wv++L+rD++nps +d+yfp++RsfDw++gHSwakGlfes+dG
      CCD26019.2 611 --TSSQDFGNSFYNDHHFHYSYHVITASIIALVDNDinadgngssWLIQNKDWVECLIRDYCNPSIDDQYFPQFRSFDWFNGHSWAKGLFESGDG 703
                     ..457****************************************************************************************** PP

  Glyco_hydro81C 183 kdqEsssEdvnaayalklwGkvigdasleargnlmlaiearslqkyflleednkvqpkefignkvaGilfenkvdhttyFgankeyiqgihmlPl 277
                     kd+EsssEdvna+yalklwG v+++++le+ gnl+l+i + sl++yfl+++dn ++pk+fignkv+Gilfenk+dhttyFg++ +yiq+ih +P+
      CCD26019.2 704 KDEESSSEDVNASYALKLWGLVTKNNKLEQLGNLQLGILRGSLNHYFLYSNDNITEPKNFIGNKVSGILFENKIDHTTYFGNELQYIQMIHAIPI 798
                     *********************************************************************************************** PP

  Glyco_hydro81C 278 lpvselirskkfvkeeweallaeraekveegWkgilyanlalvdpkaayeffsseefkeklldgGasrtWyl 349
                     +p+s++irs+kfv+eewe++l  ++ ++++gWkgi+++n al+dp  +++ff+++efk+++ld+G+s+tW+l
      CCD26019.2 799 TPASSFIRSPKFVEEEWEQKLIGIVGDINDGWKGIIMLNVALFDPIMSFSFFNDPEFKSDFLDNGQSLTWSL 870
                     **********************************************************************97 PP

>> Glyco_hydro_81  Glycosyl hydrolase family 81 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.7   3.3   1.5e-97   1.3e-93       2     322 ..     182     503 ..     181     504 .. 0.91

  Alignments for each domain:
  == domain 1  score: 313.7 bits;  conditional E-value: 1.5e-97
  Glyco_hydro_81   2 pvp.psgvsesdkpleTNkFYaNllLgdqtqpvythPYslkwskgk.swGlavshteasqrvfgpdksaepasyyvnPigiqslvlsaaelssst 94 
                     + p p +++++++ l+TNkFYaNl+Lg+qt+p++thPYsl++sk++ s+G+a++h++asqrvf +   + p+++++ P++i+ +++s+ e++ ++
      CCD26019.2 182 EIPlPMNLNKNGSALHTNKFYANLFLGNQTCPIWTHPYSLWFSKEQdSLGIAINHIKASQRVFSD---EIPSKFFFCPTNIKAFIFSSIEFNITE 273
                     566678899***********************************966****************87...689********************6655 PP

  Glyco_hydro_81  95 s..ltvsslkdlsvtvelsasksssssirfpLvqGmgFvTaiysnltpviqsgvgfksveagssvks.sv.vtkyrvkledgqtWllYatpes.. 183
                     +  l +  ++++s++++l+  k++s+ i fpLvqGmgFvTaiy nltp +qs++gfks++ +++++s  + v+kyr+ l+d+++W+lY+t +   
      CCD26019.2 274 MpkLGFAGCNHMSIQLQLK--KNDSQFIWFPLVQGMGFVTAIYYNLTPKFQSMIGFKSITLITNNQSlPInVSKYRILLQDDRIWTLYITLPVgs 366
                     567***************9..6778**********************************9988888743468******************99966 PP

  Glyco_hydro_81 184 ..ssdleltlesnstiegskefsG.iiqvaklpgedseseavlDeaagvYatgaelsg.svsgeat..gsYsfkykkeGkseesgkllmfalPhh 272
                       +  ++lt+ + +ti+++k++sG i+q+        es++ +D+ ag Y++++++++ +++++ t   +Y++kyk++++++ s ++l+falPhh
      CCD26019.2 367 etTFRMSLTQIDGNTIVADKSISGtIVQIIP------ESHDQIDRLAGSYVMDCTVESyAINDN-TdeLNYKLKYKTSSQTKPSPNTLIFALPHH 454
                     44445667777*************9999999......45679****************545554.3369*********999999*********** PP

  Glyco_hydro_81 273 lesldeetkarvtklklrsttkGemtavlgdswtleetnlpvelgfaPws 322
                     +++++++t +++t++kl+st++Gem+a+++++++++  ++p++l+f+P++
      CCD26019.2 455 IDVMTQQTLNTRTGIKLDSTVMGEMEAFITTEFNMNL-SIPTNLNFNPFT 503
                     *************************************.56********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       409  (0.0228122); expected 358.6 (0.02)
Passed bias filter:                      238  (0.0132746); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.24s 00:00:00.88 Elapsed: 00:00:00.41
# Mc/sec: 6384.65
//
Query:       CCD26020.2  [L=960]
Description: hypothetical protein NDAI_0G02450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (960 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       904  (0.0504211); expected 358.6 (0.02)
Passed bias filter:                      224  (0.0124937); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 6642.23
//
Query:       CCD26021.2  [L=717]
Description: hypothetical protein NDAI_0G02460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-35  122.6   0.0    4.7e-35  121.1   0.0    1.8  1  Diphthami_syn_2  Diphthamide synthase
    9.7e-16   57.9   0.0    9.4e-07   28.9   0.0    2.6  2  Ribonuc_L-PSP    Endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> Diphthami_syn_2  Diphthamide synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.1   0.0   5.2e-39   4.7e-35       1     194 [.       1     228 [.       1     242 [. 0.84

  Alignments for each domain:
  == domain 1  score: 121.1 bits;  conditional E-value: 5.2e-39
  Diphthami_syn_2   1 mkvavlysGGkDsilaLykalke.sevesLvsvi.....senkesymfhvvnvhlvellaesvGiplikletaGeeekeve..dLkgtlkkld. 85 
                      mk ++l+sGGkDs + +++ lk+ +e + L ++      +++ +s+mf +v  +++ l +  +G+pl ++ +     k+v+   L  ++++++ 
       CCD26021.2   1 MKFVALISGGKDSFYNIFHCLKNnHELIALANLHptdvqEQELDSFMFQTVGHDIIPLYSKCLGVPLLRTTIDKSSSKNVDlnYLPTKFDEIEk 94 
                      899*******************98******99751111145669***********************999887766666642256666666666 PP

  Diphthami_syn_2  86 ..............veavviGaieseyqksriervCrelGlksvaPLWkkdpeelleeivee............kfevivvavkaegldeslLG 153
                                     eav +Gai s yq+ r+e+vC++lGl  +  LW++d +el++e+ +             kf+++++ v+a gld+s LG
       CCD26021.2  95 lyelllsiknefpdLEAVSVGAILSSYQRIRVESVCQRLGLTVLSYLWQRDQLELMKEMCSMskdihtdvtsccKFDARIIKVAAIGLDKSHLG 188
                      667777888999999****************************************99986532233333344448******************* PP

  Diphthami_syn_2 154 rridkklidelkklsekygidkagegGeaetlvlDaPlfkk 194
                      + +   ++    kl++ y ++ +gegGe+et+vlDaP+fk 
       CCD26021.2 189 KSLPV-NLPTFTKLNKMYQVHICGEGGEFETMVLDAPFFKN 228
                      **976.57889999999**********************96 PP

>> Ribonuc_L-PSP  Endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0     1e-10   9.4e-07      38     113 ..     340     418 ..     328     424 .. 0.90
   2 !   26.0   0.0   7.9e-10   7.1e-06       4     112 ..     465     589 ..     464     593 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.9 bits;  conditional E-value: 1e-10
                    -SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSST...S--EEEEEE-SBSGGG-SE CS
  Ribonuc_L-PSP  38 egdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdelk...eaParsaveVaaLpkgakv 113
                    + +v +q+++++e+l ++L+  ++  s+ +  +  l d+++f +vn +y+++f++ k    +P r++v+ + L+++ ++
     CCD26021.2 340 SVSVIKQAENVFEQLAKILNDENLFPSQTLYSSLILRDMSQFSKVNGIYNKFFNTFKvgpLPPSRACVGSELLANDCQL 418
                    567889*************************************************9776678***********998876 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 7.9e-10
                    STTTSSS-BSEEE....ETTEEEEEEE-SB-TTTSCB.-SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEESSGGGHHHHHHHHHHHSSSS.. CS
  Ribonuc_L-PSP   4 apaaaapYsqavk....agnlvyvsGqlpldpetgelvegdveeqtrqalenlkavLaaagaslsdvVkvtvFladiedfaevnevyaeafdel.. 93 
                    ap  ++pYsqa+      +++ y+sGq++l p+++++ + + e+q   al+  + + ++++++ +  + +t+F+  ++  ++v +++  ++++   
     CCD26021.2 465 APCNIGPYSQAIWtrydFNKVTYISGQIGLIPASMNILDSSKEAQCVLALRHFDTLKETIDSKRQ--LFMTCFISTMDVLHTVCSIWSLYSNKMan 558
                    57789******98677789**********************************999888886655..7899*****************99999988 PP

                    .........T.S--EEE..EEE-SBSGGG-S CS
  Ribonuc_L-PSP  94 .........k.eaPars..aveVaaLpkgak 112
                             k + P  s   v+V++Lp++a 
     CCD26021.2 559 esdselwwdKeNDPMESiiIVKVSQLPRNAV 589
                    8899999873456666522578888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       521  (0.0290591); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.50
# Mc/sec: 4317.67
//
Query:       CCD26022.2  [L=545]
Description: hypothetical protein NDAI_0G02470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1023  (0.0570584); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3880.63
//
Query:       CCD26023.1  [L=451]
Description: hypothetical protein NDAI_0G04710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.033   14.1   5.9       0.35   10.8   0.6    3.2  3  Nore1-SARAH  Novel Ras effector 1 C-terminal SARAH (Sav/Rassf


Domain annotation for each model (and alignments):
>> Nore1-SARAH  Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.6     2e-05      0.35      13      31 ..      27      45 ..      27      46 .. 0.89
   2 ?   -2.7   0.0      0.33     6e+03      27      35 ..     318     326 ..     312     328 .. 0.71
   3 ?    4.5   0.1    0.0018        32      12      23 ..     339     350 ..     338     352 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 2e-05
  Nore1-SARAH 13 iLeeEEeeeiqqikrkYta 31
                 +L+eEEe+ei+ +++ Y +
   CCD26023.1 27 VLDEEEEDEIKNVENPYLK 45
                 59************99976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.33
  Nore1-SARAH  27 rkYtalrqk 35 
                  +kY+ l++ 
   CCD26023.1 318 AKYESLKDF 326
                  688888865 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.0018
  Nore1-SARAH  12 riLeeEEeeeiq 23 
                  ++L++EE++e q
   CCD26023.1 339 TKLNKEENDESQ 350
                  79*******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       907  (0.0505884); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 2927.24
//
Query:       CCD26024.2  [L=813]
Description: hypothetical protein NDAI_0G02480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.9e-36  124.1  12.5    6.9e-36  124.1  12.5    2.5  2  SLS       Mitochondrial inner-membrane-bound regulator
  ------ inclusion threshold ------
        5.9    7.5   7.1        1.6    9.3   1.2    2.6  3  POX       Associated with HOX


Domain annotation for each model (and alignments):
>> SLS  Mitochondrial inner-membrane-bound regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.6     0.041   3.7e+02     103     132 ..     203     245 ..     173     274 .. 0.63
   2 !  124.1  12.5   7.7e-40   6.9e-36       1     222 []     297     543 ..     297     543 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.041
         SLS 103 kl...skvdklkdl.lseelleelgrltntvie.........v 132
                 k+   ++ +++++  ls  +l+e+++ tn  ++         v
  CCD26024.2 203 KGsdkKTAKTTTNSkLSTFDLQEIESQTNDLLRfessvtlsqV 245
                 2266555556677779999999999999988886655444331 PP

  == domain 2  score: 124.1 bits;  conditional E-value: 7.7e-40
         SLS   1 KeklierIlrecWkleiseevealgele.......................evklsprefflLl.tgngklLqnlsrihgakielnrsenklritA.tk 74 
                 K+k+i+rI+ + W++ i  + e     e                       +++l+ +e++lL+ t++gklL+nl++ ++++i++ ++enkl+i+A ++
  CCD26024.2 297 KKKIINRIILKFWDCRIITTNEDST--EqkedislinrhkqkkitktyevsTIDLKHTELALLIfTERGKLLKNLTKMNDVTIAFPLDENKLIIKAvSR 393
                 99***************98888544..4669****************************************************************7589 PP

         SLS  75 staeyieasineilknittetvdlsellklskvdklkdllseelleelgrltntvie...............vseddnnknskselkisalgedradla 158
                 ++++y e si++il+n+t+e +d++ l ++ +  ++     + l+++++  ++tv+e                s ++nn+ ++ ++k+sa+g++r++ a
  CCD26024.2 394 KIINYLEISIRKILSNVTNEFIDCHSLFQKLSIPQI-----NNLINLIEINSGTVFEqidknnnnnnnnnsnNSNNSNNNINEMIFKVSAFGQKRIEFA 487
                 99*********************8888876444443.....456*************8888887777765433366668999***************** PP

         SLS 159 kRlLlwalgpsdsnkrlseallavtsssksknttlrlvekekdypfrdeeslpWkdrlkeWaRw 222
                 kRlL+w +   +++++l e+ + + ++s    t+     + k+y+++d es++W d++k+W+R+
  CCD26024.2 488 KRLLYWGT---YEDNNLIEKTVLCVPHSIRE-TEP----TFKKYSYNDMESFNWIDKNKDWYRL 543
                 ********...87778888888899988744.555....4589********************7 PP

>> POX  Associated with HOX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1         2   1.8e+04      60      75 ..      85     103 ..      60     117 .. 0.45
   2 ?    9.3   1.2   0.00017       1.6      24      82 ..     179     236 ..     149     244 .. 0.70
   3 ?    0.4   0.1       0.1   9.2e+02      37      52 ..     451     466 ..     406     491 .. 0.55

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2
         POX  60 s...saelssaerqelqrk 75 
                     +++lss+      ++
  CCD26024.2  85 TgaiEPSLSSSVHTSSIEE 103
                 0112333333333333333 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00017
         POX  24 kksksssaskkkkkkakkskeseegegsssssssasssaelssaerqelqrkkakLlsm 82 
                 ++++++++sk++   ++k+ e ++++gs++++++++ +++ls+ + qe++++ ++Ll  
  CCD26024.2 179 QTTSRKHISKQS-ALTQKNAEDHTKKGSDKKTAKTTTNSKLSTFDLQEIESQTNDLLRF 236
                 334444455544.4444444555556666666777889*****************9975 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.1
         POX  37 kkakkskeseegegss 52 
                 ++++++++s+++++s+
  CCD26024.2 451 NNNNNNNNSNNSNNSN 466
                 1111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1663  (0.0927548); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.32s 00:00:01.05 Elapsed: 00:00:00.51
# Mc/sec: 4825.07
//
Query:       CCD26025.2  [L=423]
Description: hypothetical protein NDAI_0G02490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.2e-27   95.3  14.1    6.2e-27   94.4  14.1    1.4  1  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.4  14.1   3.5e-31   6.2e-27       3     319 ..      11     317 ..       9     323 .. 0.82

  Alignments for each domain:
  == domain 1  score: 94.4 bits;  conditional E-value: 3.5e-31
  Hyphal_reg_CWP   3 llialalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitstssllalsvtlasatgsieNnGiivf.nseesl 96 
                     +l+ l  alei+++  ++g+i+++ + +tI+++ +l+++  + ++f g+l+v  +g+l+++s+     ++vt     gsi+N+  i + n  + +
      CCD26025.2  11 ILLPLSQALEITHDVLQTGSITYN-EPITIDTDKSLKVTSGTNVNFMGSLNV--DGNLCVSSNY----INVT-----GSITNSHNIYLyNPGRYS 93 
                     6788999****************9.*************************99..9******996....6666.....99***9999997888889 PP

  Hyphal_reg_CWP  97 tassyklvgasFeN..nGelylagsgsvvastmeitsnsweNnGlivfyqsqrssgtvklgaalgsitNdGqIclknqayqqttsiqGsGCitvg 189
                     ++s  +++ +s+ N  +G l   +sg+ + +++   s+s+ N+G+i +        ++++ ++ + i+N+G+I l n++ + + s++G GCi+  
      CCD26025.2  94 HTSGTNIAVKSILNekEGLLT-VQSGAYLVNELFGASDSFINEGIINIPS---FFPNLSIYGPESGIENTGTIVLGNTNATFSNSVTGGGCISNL 184
                     9999***99*****6555333.334445666666667*********9964...55778888999*****************************99 PP

  Hyphal_reg_CWP 190 edssiyisnsllsissdqtiYLadsssslvvesvskpqtfkvagFGngnkigltlpllglvlssisYdsdtgiLtlral.....llsqkFnIGtG 279
                     +d+ + + ++    + dqt++ + +  +++v   s  ++   +gF +g  ig  ++  ++++ s++Yd ++g + ++++       + + ++G G
      CCD26025.2 185 NDAVY-LDSTK---EIDQTFWNSGG-MEIHVIRGSYAKPLVFRGFSKGASIGYAVSS-QTKTLSWNYDPTNGSMVINTSssgasSDIINIDLGPG 273
                     88766.75555...67888886655.5666666665888**************9995.45668*************9886665322699****** PP

  Hyphal_reg_CWP 280 YdsskFeivtdagagll.....svqngavtYngpvPsrslPsaCq 319
                     Y+ss+F+i+ d+  g++     +    +v+Y+g  P+++ Ps+C+
      CCD26025.2 274 YNSSLFTITIDSV-GIPgvsgvTQRYLTVRYKGVSPETTPPSECR 317
                     *******888765.6664443333445799**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       674  (0.0375927); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3113.43
//
Query:       CCD26026.2  [L=1042]
Description: hypothetical protein NDAI_0G02500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.3e-93  311.8  25.3    6.4e-93  311.6  25.3    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
    1.8e-51  175.8  45.5    2.6e-51  175.3  44.7    1.6  1  Nha1_C          Alkali metal cation/H+ antiporter Nha1 C term


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.6  25.3   7.1e-97   6.4e-93       4     379 ..      20     437 ..      17     439 .. 0.97

  Alignments for each domain:
  == domain 1  score: 311.6 bits;  conditional E-value: 7.1e-97
                     HHHHHHHHHH...HHHHTTSXHHHHHHHHHHHHTTTTTS..........HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHHH CS
  Na_H_Exchanger   4 lillallvgl...larrlklpeivgliiaGlllGpsglglieps.....eedlevlselglilllFlaGleldlrelrknlksilllallgvlit 90 
                     ++++++++++   + ++l+++e++++ i+Gl++Gp++l++++p      ++++ ++ +++l+l++F++++el++++++k++ s+++l++++++  
      CCD26026.2  20 GVFSSIFSLVslfVKEKLYIGESTVAGIFGLIVGPVCLNWFNPLkwgnsDSITLEITRIVLCLQIFAVAVELPRKYMLKHWLSVVMLLFPVMTTG 114
                     55555555555536********************************************************************************* PP

                     HHHHHHHHH.HHTXTTCHHHHHHHHHHHTSSXHHHHHHHC...CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTX.XXXXTSSSTSXHHHH CS
  Na_H_Exchanger  91 vvliGlllylllilgiplleallfgailsatdpvvvlailk..eegrvperlgtlllgesvlnDavavvllavllalak.eeaggetslllllli 182
                     +++iGl++++ +i+g++++e+ll++a+++atdp+++ ++++  ++++vp +l++ll +es++nD++a++++++ l l+  +++g+e+  ++++++
      CCD26026.2 115 WLIIGLFVWI-VIPGLNFSESLLISACITATDPILAQSVVSgkFAQKVPGHLRNLLSAESGCNDGMAFPFIFLSLNLIIhPGNGREIVKDWICVT 208
                     *********8.79****************************99**************************************************** PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHS....CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHH.HHHHHTTHHHH.HHHHHHHHHHH CS
  Na_H_Exchanger 183 flvvavgglllglvigwllrlitrft....dddrelevllvlllallaallaellgvsgilgaflaGlvls.eyefsnklsek.lesfreglfnp 271
                     +l+++++g++lg++ig++ r+++rf+      dre++++++++la+++a+++++lgv+++l++f+aG++++ +++fs++++e+ ++ +++ l+n+
      CCD26026.2 209 LLYECIFGCILGVFIGYIGRRAIRFAeeknIIDRESFLAFYVVLAFCCAGFGSILGVDDLLVSFAAGAAFAwDGWFSQRTEESkVSTVIDLLLNY 303
                     **********************************************************************************99*********** PP

                     HHHHHHHHHSXHHHHHX...XHHHHHHHHHHHHHHHTHHHHHHHHHTTTX..SSXHHHHHHCC.CCSS.BHHHHHHHHHHHHHHXHHHH...... CS
  Na_H_Exchanger 272 lfFvlvGlsldlkvlnn...hlsvlilvllilvaillgrilavflllrll..glslrealiig.fgglqrgavalalaalgpalgllar...... 354
                     ++F+++G+ ++++ +nn   +l+v++l++l++v+i+l+ri+av+ll++++  ++s+real++g fg++++gav +a++a+++++  +++      
      CCD26026.2 304 AYFIYFGAIIPWSQFNNgsiGLNVWRLIILSIVVIFLRRIPAVMLLKPIIpdIKSWREALFVGhFGPIGVGAVFAAILARAELEDTISEeptpla 398
                     ***************99*********************************999*******************************99999999999 PP

                     .............TT.SSTTTCSTSXHHHHHHHHHHHHH CS
  Na_H_Exchanger 355 .............el.yallivvvlftvlvqGlslkpll 379
                                  ++ +++++++++++++v+G+s+++++
      CCD26026.2 399 rippegtkhyqliACiWPTTCFFIVTSIIVHGSSVAVVT 437
                     99999********999*******************9875 PP

>> Nha1_C  Alkali metal cation/H+ antiporter Nha1 C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.3  44.7   2.9e-55   2.6e-51       1     444 [.     465     989 ..     465    1020 .. 0.63

  Alignments for each domain:
  == domain 1  score: 175.3 bits;  conditional E-value: 2.9e-55
      Nha1_C   1 WMnRLPrldsqsrSfSlrrvdt.sdtsedekkepefppg.....tlgppvrpaGgflRRqkeedrskkksrsss........................e 69 
                 WM RLP+ld+++rSfSl+rvdt  ++  + +  +++ ++     t+g+p+r  Gg+ R+  +++ +++++++++                        +
  CCD26026.2 465 WMTRLPSLDKSGRSFSLQRVDThVSAAPSTN--ENIGTTetvveTSGIPTRAVGGMTRKDVKKR-KRQGRKRKRdkifhrrtlsnkynntyddelndlG 560
                 *********************9644443332..33333345788***************55544.444444444589********************** PP

      Nha1_C  70 rerrqrekkkwddglglGgpisqsaifpqrrseseee.......pessteeee..........................................seee 119
                 rer+qre+++++++++l+ ++ ++ ++ ++ s+ ++e               +                                          s   
  CCD26026.2 561 RERLQREREAQAATFALSSANINNYDNYDNISSIHSEsesererV-------RaekekgtlinqdlqsfnsfnnnnirievpdvvsmgsnipsnyS--- 649
                 *****************9876555544444444444412223330.......22333444444444444444444455555555555444444331... PP

      Nha1_C 120 sepesessatsseseee................................deseseesperkeekkeeeeppvevYqEGdkiIiEdeeGevl....eved 182
                                 +                                ++s ++++ er+++ k++e++++ +Yq Gd+iIiE+++Ge+l     +++
  CCD26026.2 650 ----------------TtemhsistgkedtgqtnkedesmytgssisgsHSSVATSERERRQQIKKDEDQAHIAYQSGDQIIIENKHGEILneadLKKR 732
                 ................03333333333333333343444555555544333333344489999****************************87542233 PP

      Nha1_C 183 kpkeeeee....rekssk.............................seksshsleslkrrlsevskeeekekrkekkkskrkhekarAYqfgntIIvE 248
                 k ++ee++    r    +                             s +s +sl++lk++l++++   +k+   ++  s    +k++AY+++n++I+E
  CCD26026.2 733 KLNDEEANnlspR----TsrssslgsgklskiltgpftkdfnlsptqSYESDTSLRTLKKILTPPE-GIRKSFPIPQRGSVGSTSKYHAYKMDNLLIIE 826
                 3333333345431....14467899*********************9999***************5.66666665555557999*************** PP

      Nha1_C 249 dEDGEVikrYkipnpks........keakkksrkrsssvvskalsavGlkskekaaeksskkskaeeeeeeeddkkirftiggvgrrmtkedfirevqk 339
                 + +G+V++rYki  p +        ++++++++ + + vv+kal+avGl+s++++  + skks+++ +++  + ++                      +
  CCD26026.2 827 NNEGDVLRRYKIT-PRErsnsnsssNATTNSKDIKPTGVVNKALTAVGLRSRNSSL-SGSKKSNTNPQPT--TLQRG---------------------R 900
                 ************5.422256676545555556667899***********9987332.2223333333333..33333.....................3 PP

      Nha1_C 340 ldpktrkevvdqsdaskavkelakkd..rkltpapkerkeasqaseseeseeseedeeeesseedsssdeeseeeetaaerrrrlaalessededsedd 436
                 +dp+tr + vd+        + ak    r ltp p+++ +++++ ++ ++e+  ++++++ +e++++ d +     t       +++++s e++++ d+
  CCD26026.2 901 NDPQTRMNNVDNV------AAGAKTGkpRPLTPIPTQEYSSEEEDDDDDDEQDPHSNDDGGNETEDDYDYD-----T-------EDESNSFESDEDIDS 981
                 6788887777772......2222222335566666633333333222222222222222222222222222.....2.......333344444444444 PP

      Nha1_C 437 gteegETa 444
                 ++e +ETa
  CCD26026.2 982 EREGNETA 989
                 44555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1042 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1349  (0.0752412); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.43
# Mc/sec: 7337.12
//
Query:       CCD26027.1  [L=171]
Description: hypothetical protein NDAI_0G04750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.19   11.6   0.0       0.57   10.0   0.0    1.7  2  Inhibitor_I48  Peptidase inhibitor clitocypin


Domain annotation for each model (and alignments):
>> Inhibitor_I48  Peptidase inhibitor clitocypin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       0.1   1.9e+03      45      53 ..      44      63 ..      19      89 .. 0.48
   2 ?   10.0   0.0   3.2e-05      0.57      18      63 ..     111     159 ..     102     170 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.1
  Inhibitor_I48 45 kieavhGk...........k 53
                   +i+  + k            
     CCD26027.1 44 RIDMSNVKntkeghfmktlL 63
                   55555544333333322222 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 3.2e-05
  Inhibitor_I48  18 lyatgngvdkivavasqvpvlfdrqvW..kieavhGkkea.ytsisiht 63 
                    ++++  ++d+iva+  q   ++d+  W  ++  ++  k+a  + i++h+
     CCD26027.1 111 IFSIKSELDDIVALGEQYQGMIDKLSWksRLFLNKAFKNAiLSYIQFHA 159
                    5678899********************4444444443444145677774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       391  (0.0218082); expected 358.6 (0.02)
Passed bias filter:                      313  (0.0174578); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1312.27
//
Query:       CCD26028.2  [L=435]
Description: hypothetical protein NDAI_0G02510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-06   27.6   3.7    0.00037   20.3   1.6    2.9  2  Methyltransf_16  Lysine methyltransferase
     0.0014   17.1   0.2     0.0014   17.1   0.2    1.4  2  Rav1p_C          RAVE protein 1 C terminal
  ------ inclusion threshold ------
       0.25   11.7   1.4       0.69   10.3   0.4    2.0  2  DPM2             Dolichol phosphate-mannose biosynthesis regu
       0.44   10.6   3.6          6    6.9   1.3    2.3  2  Eapp_C           E2F-associated phosphoprotein
        1.1    9.7   9.6       0.61   10.6   1.2    2.5  2  Afi1             Docking domain of Afi1 for Arf3 in vesicle t
        1.6    9.0  10.0        9.2    6.5   0.4    2.6  2  DUF2956          Protein of unknown function (DUF2956)


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   1.6   1.2e-07   0.00037      18     107 ..     137     277 ..     120     300 .. 0.69
   2 !    5.9   0.0    0.0032       9.4     117     147 ..     348     378 ..     309     408 .. 0.84

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 1.2e-07
  Methyltransf_16  18 grkvWdaavvlvkylekklake...................................................lganelsklsvlELGsG.tGl 59 
                      g ++W+  ++ + +++ + a++                                                    ++n+ +  s++ELGsG +G+
       CCD26028.2 137 GYVLWKTTIMFIAWVLYEEASKplrngmevtllrndswsdnsdletsdydfsrmfvprlfntktagyygntdnNKNNNKAIASIIELGSGiSGI 230
                      5555555555555555544444555555555555555555555555555555556666666666666666665677888889*******95688 PP

  Methyltransf_16  60 vGlavaellpeakviltDleellellkknielnkn.alkskvkvevLdW 107
                        +++ ++    + i tD++ +l  l++ni+ n + ++k ++  + L+ 
       CCD26028.2 231 LPVVLGNH--VDNYICTDQKGILSKLQSNIKNNLKqLNKREIISKSLNI 277
                      88888888..566789***************997647778888888875 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0032
  Methyltransf_16 117 ekeevDlilaaDcvYledslelLvkvLkell 147
                      ++++v ++la D++Y+   +++ ++++++l 
       CCD26028.2 348 NPNSVVYMLAMDVIYNDYLITPFLETVDKLR 378
                      56677899****************9999985 PP

>> Rav1p_C  RAVE protein 1 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.2         1   3.1e+03     241     264 ..      78     105 ..      66     126 .. 0.38
   2 !   17.1   0.2   4.7e-07    0.0014     167     272 ..     208     317 ..     183     326 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 1
     Rav1p_C 241 flkedekkksk....kkeaeslaeeeke 264
                   k+++++++     ++++++++e++++
  CCD26028.2  78 RNKKKKSRRRRrrkgRNKKNNTSEDDED 105
                 2222222221111111111112222222 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 4.7e-07
     Rav1p_C 167 ssikskkeksvdlfelvselngpLpvyHPqfLiqlilagklelvkeillkLfkklkflsedeeldsllelelekflkedekkksk..kkeaeslae... 260
                 +++k++++   +++el s + g+Lpv   +++  +i++++  + +++  ++ ++lk+l++ e +++ l++++++   ++++kk++  +++a ++a+   
  CCD26028.2 208 DNNKNNNKAIASIIELGSGISGILPVVLGNHVDNYICTDQKGILSKLQSNIKNNLKQLNKREIISKSLNINYDNGEATSKDKKQQeiNEAA-DIADdkt 305
                 445566677899***********************************************************99877655555522112222.2222111 PP

     Rav1p_C 261 eekeeeeeevev 272
                 ++++++++++++
  CCD26028.2 306 NKRNTQKRDKQT 317
                 233333333333 PP

>> DPM2  Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.83   2.5e+03      57      74 ..     140     157 ..     135     158 .. 0.73
   2 ?   10.3   0.4   0.00023      0.69      25      69 ..     366     410 ..     356     413 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.83
        DPM2  57 lllfvgtFiglvlikskk 74 
                 l  +  +Fi+ vl ++++
  CCD26028.2 140 LWKTTIMFIAWVLYEEAS 157
                 555677899999998875 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00023
        DPM2  25 illPfvdedhvlhkyflpreyairipvillvvlllfvgtFiglvl 69 
                 +++Pf+++   l+++fl++   +ri v + +    ++++F+   l
  CCD26028.2 366 LITPFLETVDKLRTFFLKKTRHVRIIVGVHLRNYNVIVAFLEKAL 410
                 79***********************************99987655 PP

>> Eapp_C  E2F-associated phosphoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.3     0.002         6      75     117 ..      70     112 ..      57     133 .. 0.53
   2 ?    3.7   0.0      0.02        58      74     113 ..     277     313 ..     260     407 .. 0.69

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.002
      Eapp_C  75 kykeaesekkkkkkkkskkkeekeeeaeaeeaeeeeeeeeeee 117
                  ++ ++++++kkkk++++++++ +++++++++++e+++ ++++
  CCD26028.2  70 YHDFEMEKRNKKKKSRRRRRRKGRNKKNNTSEDDEDSDGADTS 112
                 4444444555555555555555444444444444443333333 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.02
      Eapp_C  74 lkykeaesekkkkkkkkskkkeekeeeaeaeeaeeeeeee 113
                 ++y++ e+++k+kk+++ ++ ++ ++++++++++++   +
  CCD26028.2 277 INYDNGEATSKDKKQQEINEAADIADDKTNKRNTQK---R 313
                 333322222222222222222222222222222211...1 PP

>> Afi1  Docking domain of Afi1 for Arf3 in vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.2    0.0002      0.61      55     103 ..      71     115 ..      43     140 .. 0.54
   2 ?    3.3   1.8     0.037   1.1e+02      72      98 ..     286     312 ..     244     356 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0002
        Afi1  55 kdtsteeeeleeeekknklekrkkkksededdvdeedeeeeddnedlde 103
                 +d + e+ ++    kk+ +++r++k ++++++++e+de+++  +++  +
  CCD26028.2  71 HDFEMEKRNK----KKKSRRRRRRKGRNKKNNTSEDDEDSDGADTSSYY 115
                 3333333322....22222222233333334444444444444444333 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.037
        Afi1  72 klekrkkkksededdvdeedeeeeddn 98 
                  ++k++++ +e++d  d++++++++++
  CCD26028.2 286 SKDKKQQEINEAADIADDKTNKRNTQK 312
                 111111111111111111111111111 PP

>> DUF2956  Protein of unknown function (DUF2956)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   3.9    0.0067        20      40      70 ..      77     107 ..      72     125 .. 0.50
   2 ?    6.5   0.4    0.0031       9.2      51      98 ..     286     331 ..     276     334 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0067
     DUF2956  40 kkqqkekaReadkarkkqlkkkekeeeeeee 70 
                 k+++k+k+R + +++ +++k++++e++e+++
  CCD26028.2  77 KRNKKKKSRRRRRRKGRNKKNNTSEDDEDSD 107
                 5555555555554444444333333322222 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0031
     DUF2956  51 dkarkkqlkkkekeeeeeeeeeseeetevekakllpwlLLvlsWlgfi 98 
                 +k++k+q+   ++  + +++++++++t+++ ++++ + +L l W +f 
  CCD26028.2 286 SKDKKQQE--INEAADIADDKTNKRNTQKRDKQTINLEVLPLDWETFK 331
                 34444444..55556666677777888888889999999999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1586  (0.08846); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3269.26
//
Query:       CCD26029.2  [L=386]
Description: hypothetical protein NDAI_0G02520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-15   55.2  14.3    1.3e-07   31.3   0.8    2.3  2  zf-CCCH    Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    2.8e-05   24.0  17.2      0.012   15.6   8.4    2.4  2  zf_CCCH_4  Zinc finger domain
  ------ inclusion threshold ------
      0.016   15.0  13.5       0.13   12.1   0.4    2.4  2  zf-CCCH_4  CCCH-type zinc finger
       0.03   15.0   2.7       0.03   15.0   2.7    2.8  2  Torus      Torus domain
       0.54   10.8   3.6          6    7.5   0.1    2.6  2  oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal reg
        2.8    9.1   9.1        3.2    8.9   1.5    2.6  2  Pheromone  Fungal mating-type pheromone
        4.6    7.9  12.3         14    6.4   5.5    2.4  2  zf-CCCH_2  RNA-binding, Nab2-type zinc finger


Domain annotation for each model (and alignments):
>> zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.8   5.3e-11   1.3e-07       1      26 [.     282     307 ..     282     308 .. 0.98
   2 !   28.6   6.8   3.7e-10   9.5e-07       1      26 [.     320     345 ..     320     346 .. 0.94

  Alignments for each domain:
  == domain 1  score: 31.3 bits;  conditional E-value: 5.3e-11
                 -HCHCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   1 yktelCrffmrtGyCkyGdrCkFaHg 26 
                 yktelC  f   G Cky ++C+FaHg
  CCD26029.2 282 YKTELCESFTLKGVCKYENKCQFAHG 307
                 9************************8 PP

  == domain 2  score: 28.6 bits;  conditional E-value: 3.7e-10
                 -HCHCBCHHHHHS--TTGGG-SSBSC CS
     zf-CCCH   1 yktelCrffmrtGyCkyGdrCkFaHg 26 
                 ++t++C ++++ GyC+yG rC+F Hg
  CCD26029.2 320 FRTKNCSNWLKLGYCPYGKRCCFRHG 345
                 5799*********************8 PP

>> zf_CCCH_4  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.5   2.2e-05     0.056       1      19 []     287     306 ..     287     306 .. 0.91
   2 !   15.6   8.4   4.8e-06     0.012       1      19 []     325     344 ..     325     344 .. 0.98

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.2e-05
   zf_CCCH_4   1 Ckfflq.GtCkkGdkCrFaH 19 
                 C  f   G Ck+ +kC+FaH
  CCD26029.2 287 CESFTLkGVCKYENKCQFAH 306
                 7778888************* PP

  == domain 2  score: 15.6 bits;  conditional E-value: 4.8e-06
   zf_CCCH_4   1 Ckfflq.GtCkkGdkCrFaH 19 
                 C ++l+ G+C++G +C F+H
  CCD26029.2 325 CSNWLKlGYCPYGKRCCFRH 344
                 ****************9999 PP

>> zf-CCCH_4  CCCH-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   5.1e-05      0.13       2      21 ..     286     306 ..     285     307 .. 0.90
   2 ?    6.7   7.2    0.0025       6.4       8      21 ..     331     344 ..     323     345 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.1e-05
   zf-CCCH_4   2 lCpyfa.kGsCrfGdnCrFsH 21 
                 lC +f+ kG C++ ++C F+H
  CCD26029.2 286 LCESFTlKGVCKYENKCQFAH 306
                 6888888************** PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0025
   zf-CCCH_4   8 kGsCrfGdnCrFsH 21 
                  G C +G +C F+H
  CCD26029.2 331 LGYCPYGKRCCFRH 344
                 688*********** PP

>> Torus  Torus domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   2.7   1.2e-05      0.03      39      95 ..     252     310 ..     240     319 .. 0.66
   2 ?    3.4   3.3     0.049   1.3e+02      71      91 ..     323     344 ..     312     351 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
                 THHHHS-----S----HHHH.----HHHHSTT--B-HHHH.HT--SSGGG-SSB-S--- CS
       Torus  39 kekkkkskekaktrcnikkd.sGytkadkekesyfClfFa.rGlCakGkkCeylHrlPt 95 
                 +++++k+ ++ k  ++ k++ +   + ++  ++ +C  F+ +G+C++ +kC++ H l +
  CCD26029.2 252 SNNQQKQVKQPKKTIKSKTKsQSQSQTKQLYKTELCESFTlKGVCKYENKCQFAHGLHE 310
                 333334444444444444430445555567788999988769*************8865 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.049
                 -B-HHHHH.T--SSGGG-SSB- CS
       Torus  71 yfClfFar.GlCakGkkCeylH 91 
                   C  + + G+C++Gk+C + H
  CCD26029.2 323 KNCSNWLKlGYCPYGKRCCFRH 344
                 445555444***********99 PP

>> oligo_HPY  Oligopeptide/dipeptide transporter, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1    0.0023         6      27      62 ..     252     306 ..     245     307 .. 0.78
   2 ?    3.4   0.7     0.044   1.1e+02      50      62 ..     327     344 ..     309     346 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0023
   oligo_HPY  27 rldrekd...klekikgeapslerlde...............G.CpFapRCpfal 62 
                 +++++k+   + ++ik++ +s ++ ++               G C++ + C+fa 
  CCD26029.2 252 SNNQQKQvkqPKKTIKSKTKSQSQSQTkqlyktelcesftlkGvCKYENKCQFAH 306
                 55555555557778888888777777788999999999*9*977********996 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.044
   oligo_HPY  50 e....G.CpFapRCpfal 62 
                 +    G Cp+ +RC f+ 
  CCD26029.2 327 NwlklGyCPYGKRCCFRH 344
                 1555566*******9875 PP

>> Pheromone  Fungal mating-type pheromone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.5    0.0013       3.2      13      57 ..      47      89 ..      19      95 .. 0.75
   2 ?    3.9   1.1     0.045   1.1e+02      13      30 ..     163     180 ..     151     207 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0013
   Pheromone 13 ssssaessesalfasssspspspalsssasasddevlavpvDaEr 57
                 s +++ss+++ ++s+ss ++s+++++  ++s  +++a p+++E 
  CCD26029.2 47 LSNTDNSSRTTDSISASSATESVFSAN--NHSHTPTQARPINHED 89
                456788999999999999997755555..5555566999999995 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.045
   Pheromone  13 ssssaessesalfassss 30 
                 ssss++ss+s+++++ + 
  CCD26029.2 163 SSSSSSSSSSSSSMPKVL 180
                 333444444444433333 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.5      0.01        26       2      18 .]     287     307 ..     286     307 .. 0.73
   2 ?    6.4   5.5    0.0053        14       2      18 .]     325     345 ..     325     345 .. 0.91

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.01
   zf-CCCH_2   2 Crffpn...C.tnpkCpFaHP 18 
                 C  f     C +  kC FaH+
  CCD26029.2 287 CESFTLkgvCkYENKCQFAHG 307
                 55555556688888******6 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0053
   zf-CCCH_2   2 Crffpn...C.tnpkCpFaHP 18 
                 C ++ +   C ++++C F+H+
  CCD26029.2 325 CSNWLKlgyCpYGKRCCFRHG 345
                 888888999***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2305  (0.128563); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2744.41
//
Query:       CCD26030.2  [L=802]
Description: hypothetical protein NDAI_0G02530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-15   55.5   0.6    8.5e-15   54.5   0.6    1.6  1  Slx4      Slx4 endonuclease


Domain annotation for each model (and alignments):
>> Slx4  Slx4 endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.6   4.7e-19   8.5e-15       1      60 [.     741     800 ..     741     801 .. 0.98

  Alignments for each domain:
  == domain 1  score: 54.5 bits;  conditional E-value: 4.7e-19
                 HHHHHHHHHT-HHHHHHHHTT--EEHHHHHHHHHHH-GGGGGS-HHHHHHHHHHHT--EE CS
        Slx4   1 feaiteaiksdpslhekILlYePIvLedltawLnteglglkevdpaelrewcdskgIcct 60 
                 fe+it+ +++d  +++kI+++ePI +++l + L + +++++ vd++++rew+ds+g+c+ 
  CCD26030.2 741 FEHITKIVRDDEMMMDKIICFEPILIQELLERLIKLDPFIEIVDTSTIREWADSQGVCLK 800
                 79********************************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2141  (0.119415); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 5602.46
//
Query:       CCD26031.2  [L=604]
Description: hypothetical protein NDAI_0G02540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-67  226.1   0.1    5.8e-67  225.4   0.1    1.3  1  Choline_kinase  Choline/ethanolamine kinase
      6e-14   51.5   0.0    1.4e-13   50.3   0.0    1.6  1  Choline_kin_N   Choline kinase N terminus
    0.00019   21.5   0.0      0.017   15.0   0.0    2.4  2  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.069   13.1  26.7       0.29   11.1   0.4    2.2  2  Mucin           Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.4   0.1   1.3e-70   5.8e-67       3     213 .]     176     457 ..     174     457 .. 0.96

  Alignments for each domain:
  == domain 1  score: 225.4 bits;  conditional E-value: 1.3e-70
                     SEEEEEEE-TTCTTCCHHHHHHHHHHHHHHTTSSS-EEEEETTEEEEE--.TCEE--TTGGGCHHHHHHHHHHHHHHTTCHH...TTSSSS-HHH CS
  Choline_kinase   3 kkvllRiygkkteelidretElvvfallserglgpklygifenGrieefi.esrtlstedlrepeiskkiAkklaelHslel..eseskespslw 94 
                     +++llR+yg +++++idr++El+v+a+ls r++gp+l+g+f+nGr+e+f+ +++tl+++d+r++++s++iA++++elH  ++  +se+++ p +w
      CCD26031.2 176 PSLLLRVYGSNNDTIIDRDYELQVLARLSIRNIGPSLFGCFSNGRFEQFLeNATTLNKDDIRDWKTSQRIARRMKELHIGVPllSSEREKGPVCW 270
                     579******************************************************************************99999********* PP

                     HHHHHH.....HHCCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHHHCHGG-.....EEEE-S--SGGGEEE.................... CS
  Choline_kinase  95 ktmqkw.....llnkeaqtkakkekkkkqlklinledlekelekleklleelesp.....vvfcHnDlqegNill.................... 159
                     +++++w     +  k + + +++ + +++l + n++d++  ++k++++l++++s+     + fcHnD q+gN+l+                    
      CCD26031.2 271 QKINQWvkfldTNPKAQIWIKNDTNIQTHLLCKNWKDFKTAISKYQNWLSSFHSDakgknLGFCHNDAQYGNLLFsapikpttndinidsntpta 365
                     ********9977778888899999*************************96666666677*********************************** PP

                     .......................................-CTTEEEE--GTT-EEEEHHHHHHHHHHHTTEEHHHCSTSHEE-GGGS--HHH CS
  Choline_kinase 160 ......................................nkeekklvlIDFEYagynyrgfDlanhfiEwagdyeeeeaffkldyskypsreq 213
                                                           +++++klv+IDFEY+g+n++++Dlanhf+Ew++dy++++a++ ++ + yp+req
      CCD26031.2 366 ttstsepptlstatsssslfpsnsriqideiikptkqeQSQDSKLVVIDFEYSGANPVAYDLANHFSEWMYDYNNASAPHVAHVESYPNREQ 457
                     *****************************************************************************************997 PP

>> Choline_kin_N  Choline kinase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.0     3e-17   1.4e-13       3      45 ..      99     141 ..      97     146 .. 0.94

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 3e-17
  Choline_kin_N   3 lsdedelvpsvdavLDnskpsdyFKeeilrLlhtLalkgWrdv 45 
                    +++e ++vp+ +a+ Dn++p+dy+K++il+++++L++++W+ +
     CCD26031.2  99 NNNECIEVPFIKATIDNTLPQDYLKDDILNMIQSLKIPKWHQR 141
                    78999***********************************976 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0086        39     163     181 ..     328     346 ..     157     356 .. 0.84
   2 !   15.0   0.0   3.8e-06     0.017     187     215 ..     411     437 ..     403     458 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0086
                 SS-EEEE-SS-SGGGEEEC CS
         APH 163 elptvllHgDlhpgNllvd 181
                     +++H+D   gNll+ 
  CCD26031.2 328 GKNLGFCHNDAQYGNLLFS 346
                 57789************98 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 3.8e-06
                 EEEE---TT-EEEECCHHHHCCHHHCSCH CS
         APH 187 vtGviDfedaglgpplyDlavllrswtse 215
                 v  viDfe++g+ p++yDla +   w+ +
  CCD26031.2 411 V--VIDFEYSGANPVAYDLANHFSEWMYD 437
                 4..*******************9448754 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5  20.4    0.0034        15      44      79 ..      48      78 ..      35      86 .. 0.49
   2 ?   11.1   0.4   6.5e-05      0.29      49     123 ..     346     420 ..     328     432 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0034
       Mucin 44 kltttttttkppttttttttasttittkttkatttt 79
                +++t++ tt ++tttttt+     i+t+tt++tttt
  CCD26031.2 48 QNNTSALTTGTTTTTTTTS-----IETTTTTTTTTT 78
                4444444444444444443.....333333333333 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.5e-05
       Mucin  49 ttttkppttttttttasttittkttkattttttttttttateaPsdavttaeaPtttttrapsrlrevdGslsss 123
                 + ++kp+t      ++++t tt t++ +t +t+t+ +   +     ++     Pt ++ ++ s+l  +d   s++
  CCD26031.2 346 SAPIKPTTNDINIDSNTPTATTSTSEPPTLSTATSSSSLFPSNSRIQIDEIIKPTKQEQSQDSKLVVIDFEYSGA 420
                 567888888888888999999999999999999988888888888889999999999999999999999877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1167  (0.0650901); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 4356.82
//
Query:       CCD26032.2  [L=300]
Description: hypothetical protein NDAI_0G02550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-34  118.9   2.8    2.8e-34  118.7   2.8    1.0  1  HVSL       Uncharacterised conserved protein
  ------ inclusion threshold ------
      0.054   13.6   0.2       0.11   12.6   0.2    1.5  1  TetR_C_17  Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> HVSL  Uncharacterised conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.7   2.8   3.1e-38   2.8e-34       1     238 []      17     296 ..      17     296 .. 0.87

  Alignments for each domain:
  == domain 1  score: 118.7 bits;  conditional E-value: 3.1e-38
        HVSL   1 PpLPssfhdlyastv...rtsteddpslhqGrkR......siphveGnWpthvYlewkpseeekellsellkkleekl.........eeevklhsllts 81 
                 Pp+P+s++++y+ ++   +++ e+++ ++++ ++      s  + +  W+ ++Yle+kp++ +++ ls++++  ++++         +++ k+++l++s
  CCD26032.2  17 PPIPDSILNKYHIEPnlaKYDIEQTSPSQNKSTKvmylrsSQRKLDQFWQAFIYLECKPTRGDRQFLSQIISTTNNNAklhtsmtnnGTALKFSPLYRS 115
                 9**************998555555555555555566777889999***************************99999999******99*********** PP

        HVSL  82 dlgaplplHiSLSrplvlrth.qkdsfldslkkelkssakrrFevsfs...glkwvsndektRsFlvlrvksp.endeLkklleavnkvleefglpply 175
                 +lg+p++lH++L+ ++++ ++  +ds+l+ l+++++++++r+F ++f+    +k++++  +++ Fl+l+vk++ + ++L+++ e+++++l++  +p++y
  CCD26032.2 116 KLGSPQNLHVTLTPNIPFASEaLRDSMLQVLSDKINKCKIRPFVLEFEsarACKLLRSVVNDKLFLALDVKEEiKRNQLMEIHEIIDETLKK-VIPEYY 213
                 ********************989********************88887556799******************9777****************.79**** PP

        HVSL 176 ...........kdeaFHiSiawslgepseeekeellselekaledaek...........eeelkqleikveevkvkiGnkvtsip 238
                            + +  H+S+a s + p +++ +++++ ++  l+ +++            +e ++l+++++++kv i++++ +ip
  CCD26032.2 214 sqswknrakdfYLNNAHMSLAESNTVP-SRMVKDFKKLQD-LLSYNNNpkncndgdketIQEENNLSFQIRTLKVDIDRQTLTIP 296
                 ********99988899*********65.555555655544.444434446788888888888899999*************9996 PP

>> TetR_C_17  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   1.2e-05      0.11      10      47 ..     194     232 ..     187     238 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 1.2e-05
                 HHHTT.TGGGSSHHHHHHHHHGGGG-HHHHHHHHHHHHH CS
   TetR_C_17  10 keele.eideslllakyEyfltsyreeerrayleeRyer 47 
                   e++  ide+l ++  Ey+ +s+++ +++ yl++ +  
  CCD26032.2 194 LMEIHeIIDETLKKVIPEYYSQSWKNRAKDFYLNNAHMS 232
                 455552579************************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       812  (0.0452898); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.37
# Mc/sec: 2411.56
//
Query:       CCD26033.2  [L=794]
Description: hypothetical protein NDAI_0G02560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.8e-07   31.3   9.1      0.005   17.2   2.0    3.0  2  zf-C2H2        Zinc finger, C2H2 type
     0.0027   18.4   6.2       0.99   10.4   1.2    3.1  2  zf-C2H2_4      C2H2-type zinc finger
  ------ inclusion threshold ------
      0.026   15.2   1.4      0.053   14.2   1.4    1.5  1  zf-TRAF        TRAF-type zinc finger
      0.042   14.3   0.3      0.042   14.3   0.3    3.4  3  zf-H2C2_2      Zinc-finger double domain
       0.28   11.3   1.7         12    6.1   0.2    2.6  2  zf_ZIC         Zic proteins zinc finger domain
       0.35   11.2   0.0       0.35   11.2   0.0    2.6  2  FAF            Fantastic Four meristem regulator
       0.37   11.1   9.2        1.9    8.8   0.1    3.8  3  zf-C2H2_jaz    Zinc-finger double-stranded RNA-binding
        9.1    6.7  14.0       0.74   10.2   4.0    3.4  3  HisK_sensor    Histidine kinase sensor domain


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.8   2.4e-06    0.0054       5      23 .]     667     685 ..     663     685 .. 0.92
   2 !   17.2   2.0   2.2e-06     0.005       1      23 []     691     715 ..     691     715 .. 0.98

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.4e-06
                 TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   5 dCgksFkrksnLkrHirtH 23 
                  C+k Fkr++n ++Hi+tH
  CCD26033.2 667 NCDKIFKRRYNVRTHIQTH 685
                 8*****************9 PP

  == domain 2  score: 17.2 bits;  conditional E-value: 2.2e-06
                 EEET..TTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCp..dCgksFkrksnLkrHirtH 23 
                 y+C+  +C k F r+++L+rH + H
  CCD26033.2 691 YRCEfrGCEKAFVRNHDLVRHKKLH 715
                 99*********************99 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.3   0.00089         2       3      23 ..     663     685 ..     661     686 .. 0.87
   2 !   10.4   1.2   0.00044      0.99       1      23 [.     691     715 ..     691     716 .. 0.95

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00089
   zf-C2H2_4   3 Cpi..CgksFsskkaLlrHlkth 23 
                 C +  C+k F++++++++H++th
  CCD26033.2 663 CLYpnCDKIFKRRYNVRTHIQTH 685
                 55556*****************9 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00044
   zf-C2H2_4   1 fkCpi..CgksFsskkaLlrHlkth 23 
                 ++C++  C k F ++++L rH k h
  CCD26033.2 691 YRCEFrgCEKAFVRNHDLVRHKKLH 715
                 89*******************9998 PP

>> zf-TRAF  TRAF-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   1.4   2.4e-05     0.053       8      56 ..     659     706 ..     654     711 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.4e-05
                 SEEE-TT--S-BEEETT.TCCCCCCTTSTTS--XXSSXXXXSXXXXXHHH CS
     zf-TRAF   8 apvpCpnecckkkilRk.dlkdHlekdCkkaevkCkfkevGCkekvkrea 56 
                  +  C ++ c k+  R+ +++ H+++  + ++  C+f   GC++ + r++
  CCD26033.2 659 KQFGCLYPNCDKIFKRRyNVRTHIQTHLEDRPYRCEF--RGCEKAFVRNH 706
                 566799999*998887648******************..****9998875 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.5   3.4e+03      18      26 .]     666     674 ..     664     674 .. 0.87
   2 ?   14.3   0.3   1.9e-05     0.042       1      25 [.     677     703 ..     677     704 .. 0.88
   3 ?   -1.3   2.2       1.6   3.7e+03       1       9 [.     707     715 ..     707     727 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.5
   zf-H2C2_2  18 plCdkaFkt 26 
                 p Cdk Fk+
  CCD26033.2 666 PNCDKIFKR 674
                 89***9996 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.9e-05
   zf-H2C2_2   1 nLrrHirkHtgekpyeCp..lCdkaFk 25 
                 n r Hi +H  ++py C+   C kaF+
  CCD26033.2 677 NVRTHIQTHLEDRPYRCEfrGCEKAFV 703
                 5689**************666*****8 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 1.6
   zf-H2C2_2   1 nLrrHirkH 9  
                 +L+rH + H
  CCD26033.2 707 DLVRHKKLH 715
                 599999999 PP

>> zf_ZIC  Zic proteins zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.031        70      23      38 ..     667     682 ..     659     685 .. 0.91
   2 ?    6.1   0.2    0.0055        12      23      37 ..     697     711 ..     690     715 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.031
                 -----BSSHHHHHHHH CS
      zf_ZIC  23 pCsktFstmhelVtHl 38 
                  C+k F++ +++ tH+
  CCD26033.2 667 NCDKIFKRRYNVRTHI 682
                 6**************9 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0055
                 -----BSSHHHHHHH CS
      zf_ZIC  23 pCsktFstmhelVtH 37 
                  C+k F + h+lV H
  CCD26033.2 697 GCEKAFVRNHDLVRH 711
                 6*************9 PP

>> FAF  Fantastic Four meristem regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00016      0.35       1      48 [.     327     385 ..     327     386 .. 0.77
   2 ?   -3.1   1.5       4.2   9.5e+03       3      10 ..     547     554 ..     547     568 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00016
         FAF   1 eFPPPlpsls.grs.........pwvllrshredGRLvleevk....vpsrheylraeRedG 48 
                 +FPPP+ +   + s          +   r + ++ R++l ev+    +  ++e +ra++ +G
  CCD26033.2 327 QFPPPIMISPaN-SnsnsnssmnASPTRRGRGHNRRFILSEVSdngnI--EDESFRATKDGG 385
                 5*****977653.3468888887778888888899*******987444..467799999887 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 4.2
         FAF   3 PPPlpsls 10 
                 PPPl +l 
  CCD26033.2 547 PPPLNILP 554
                 9***9994 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.0     0.019        44      12      25 ..     127     140 ..     126     140 .. 0.92
   2 ?    8.8   0.1   0.00087       1.9       7      24 ..     668     685 ..     666     686 .. 0.92
   3 ?    0.5   0.3      0.35   7.8e+02       7      22 ..     698     713 ..     698     713 .. 0.95

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.019
                  SSHHHHHCCTTSHH CS
  zf-C2H2_jaz  12 ksenaldnHlkSKk 25 
                  +++n++ nH+ +Kk
   CCD26033.2 127 NDSNQWNNHQYGKK 140
                  689**********8 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00087
                  TTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlkSK 24 
                  CdK Fk  ++ ++H+ ++
   CCD26033.2 668 CDKIFKRRYNVRTHIQTH 685
                  ***************986 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.35
                  TTBBBSSHHHHHCCTT CS
  zf-C2H2_jaz   7 CdKyFksenaldnHlk 22 
                  C+K F   ++l  H+k
   CCD26033.2 698 CEKAFVRNHDLVRHKK 713
                  **************87 PP

>> HisK_sensor  Histidine kinase sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.0   0.00033      0.74      30      98 ..     169     242 ..     151     247 .. 0.66
   2 ?    0.8   0.3      0.27     6e+02      70      98 ..     242     270 ..     236     286 .. 0.72
   3 ?    0.8   0.7      0.26   5.8e+02      27      83 ..     733     787 ..     715     793 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00033
  HisK_sensor  30 leiaeellddetkvvI..v..kdkeevwysp.eseelkklpleeikedkelskvfeegktvkkevslsekeenk 98 
                   +++ el++d+t+  I  +  ++++++   p e+ ++++l+ + +k++++l+ ++e++k+v+k+++l+ ke++ 
   CCD26033.2 169 NRHILELSKDPTSFDInfLqnNSNNTIQEVPnENPATNHLSQSLLKQQEKLRLALEQQKEVNKKLELQLKENQL 242
                  5556666665555544222102233333334344499******************************6555554 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.27
  HisK_sensor  70 kedkelskvfeegktvkkevslsekeenk 98 
                  +++++l++v+ e++ v +++  ++++++ 
   CCD26033.2 242 LQQEKLQRVLLEQEAVAQQLVSKNTNNDP 270
                  45677**********99999885444443 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.26
  HisK_sensor  27 elaleiaeelld.detkvvIvkdkeevwyspeseelkklpleeikedkelskvfeegk 83 
                  e+ ++ ++e ++ d+ k ++v++ +e++ ++   ++ + + +++ +++++ +v +++ 
   CCD26033.2 733 EEERSPVKETIErDKDKGIVVMKIQEQLREE---QEGHESSSTLAQEPTITRVCSDDS 787
                  5555566666665555555555555555544...345777888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1873  (0.104468); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.69u 0.24s 00:00:00.93 Elapsed: 00:00:00.40
# Mc/sec: 5963.78
//
Query:       CCD26034.2  [L=429]
Description: hypothetical protein NDAI_0G02570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-87  292.9   0.0    5.2e-87  292.2   0.0    1.3  1  Zip              ZIP Zinc transporter
     0.0018   17.8   2.2     0.0018   17.8   2.2    2.3  3  UNC-50           UNC-50 family
  ------ inclusion threshold ------
       0.22   10.7   8.6       0.38    9.9   8.6    1.3  1  Herpes_LMP1      Herpesvirus latent membrane protein 1 (LMP1)
       0.62    8.8   5.3      0.038   12.8   0.3    1.5  2  Presenilin       Presenilin
        1.6    7.2   8.1        2.2    6.7   8.1    1.1  1  RRN3             RNA polymerase I specific transcription init
        2.1    8.0  15.3          3    7.5  15.3    1.1  1  BSP_II           Bone sialoprotein II (BSP-II)


Domain annotation for each model (and alignments):
>> Zip  ZIP Zinc transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.2   0.0   1.8e-90   5.2e-87       2     332 ..      24     425 ..      23     426 .. 0.90

  Alignments for each domain:
  == domain 1  score: 292.2 bits;  conditional E-value: 1.8e-90
         Zip   2 llkilaiiaililsllgllgpllvpkiskl.lsklllslllafavGvllgtaflhLlPealealeesqleeehth.plagllvllGflllllveklltm 98 
                 +l+ila+++ili+s lg+++p+l++++s++ l++++++l+++f++Gv+++taf+hLl +a eal++++l++++ + p+a++++l++++ll++ve ++++
  CCD26034.2  24 GLRILAVFIILISSGLGVYFPILSSRYSFIrLPSWCFFLAKFFGSGVIVSTAFIHLLDPAAEALGNECLGGTFVEyPWAFGICLMSLFLLFFVEIVTHY 122
                 789********************************************************************96557*********************** PP

         Zip  99 ivek.....ksshkektpkkasssssesaakksvsndkveeseekedhvaeadtdadskeelrngkqeksesekeqas..................... 171
                 +v+k     +++h++++++ ++++   s+ + + + + ++     ++h+  ++  ++s  +l+++ q+++++++ +++                     
  CCD26034.2 123 FVAKsfgdeHHDHGNNINSVHDDDADSSDESITSYTEDHPVILPRRSHNDIENQFQKSNCKLAQSAQNPDDDDDDEEEeddklkeekerealqdrqnis 221
                 ****99999888888888877777776666666666666666666666666666666666666666666666666555666666666667777778888 PP

         Zip 172 .....................................eeedkeklaslkvraiilllglilHsfidGLAlGvssssstgislfiAvllHelpeelglga 233
                                                      eeedke+++++  +++il++g+i+Hs++ GL+l+  +s +++ +lfi++++H+++e+lglg+
  CCD26034.2 222 gnnknndnmtrfnsipgkdhfshdtdhqdqtqlgtpiEEEDKEQYLNQMFAVFILEFGIIFHSVFVGLSLS--VSGEEFETLFIVLTFHQMFEGLGLGT 318
                 99999999***************************************************************..************************** PP

         Zip 234 iLlkaglsrkkav...llnllfaltaplGiliGilvrs..isessgaeivsgillalsaGtflYvalvellphEllnek...gssslkqsllqllglll 324
                 +++++++++   +   l+ l+f++t+p++++iGi+vr+  i++s+ a+i++g+++++s+G+++Y++lvel++hE+l+++   g++++k++l ++++++l
  CCD26034.2 319 RVAETNWPSNRRYtpwLMGLAFTITSPIAVAIGIGVRHswIPGSRKALIANGVFDSISSGILIYTGLVELMAHEFLYSNqfkGPDGFKKMLAAYFIMCL 417
                 *******988777778******************************************************************99*************** PP

         Zip 325 Gfalmlll 332
                 G++lm+ll
  CCD26034.2 418 GAGLMALL 425
                 ******98 PP

>> UNC-50  UNC-50 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   2.2   6.2e-07    0.0018      53     148 ..      27     127 ..      21     135 .. 0.77
   2 ?    1.1   0.0     0.082   2.5e+02      38     101 ..     260     325 ..     246     334 .. 0.64
   3 ?   -3.0   0.0       1.4   4.3e+03      54     104 ..     338     389 ..     325     417 .. 0.64

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 6.2e-07
      UNC-50  53 iLlvlllll.saiawglayssslleilklilvmvl.vdfllvglliatvlwllvnrlllksek...seqdvewaYcFDvhlnaflpilvllyvlqllll 146
                 iL v+++l+ s++   + + ss  ++++l  ++ + ++f+++g++++t++  l+        +       ve+ ++F + l +++ ++ +  v +++++
  CCD26034.2  27 ILAVFIILIsSGLGVYFPILSSRYSFIRLPSWCFFlAKFFGSGVIVSTAFIHLLDPAAEALGNeclGGTFVEYPWAFGICLMSLFLLFFVEIVTHYFVA 125
                 45444444403444444466788999999999887589***************9887773333445999*********************999999987 PP

      UNC-50 147 pl 148
                 + 
  CCD26034.2 126 KS 127
                 65 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.082
      UNC-50  38 kqtknqyaRdDPafliLlvlllllsaiawglayssslleilklilvmvl...vdfllvglliatvlw 101
                  + k+qy     a++iL +++++  +++ gl +s s  e+ +l++v+ +   ++ l++g+ +a + w
  CCD26034.2 260 EEDKEQYLNQMFAVFILEFGIIFH-SVFVGLSLSVSGEEFETLFIVLTFhqmFEGLGLGTRVAETNW 325
                 567899999999999999887765.566666666555444444433333101444556666666655 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 1.4
      UNC-50  54 Llvlllllsaiawglayssslle.ilklilvmvlvdfllvglliatvlwllv 104
                 L +++ +  a+a g+ +++s +    k ++   ++d + +g+li t l  l+
  CCD26034.2 338 LAFTITSPIAVAIGIGVRHSWIPgSRKALIANGVFDSISSGILIYTGLVELM 389
                 5555555566666666666665435555555555677777777766555444 PP

>> Herpes_LMP1  Herpesvirus latent membrane protein 1 (LMP1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   8.6   0.00013      0.38     167     321 ..     103     257 ..      94     269 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00013
                  XXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX.XXXXXXX-EE-S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Herpes_LMP1 167 llvdllwl.llflailiwmyyhgqrhsdehh.hddslphpqqatddsghesdsnsnegrhhllvsgagdgpplcsqnlgapgggpdngpqdpdntddn 262
                  + + l+ l llf+  ++  y+  + + dehh h +++   ++   ds  es +   e +  +l         + + ++        +  q+pd+ dd+
   CCD26034.2 103 FGICLMSLfLLFFVEIVTHYFVAKSFGDEHHdHGNNINSVHDDDADSSDESITSYTEDHPVILPR--RSHNDIEN-QFQKSNCKLAQSAQNPDDDDDD 197
                  44444433144555556778899999999884556666666666677777766655554444433..33344444.4455566778899*****9999 PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXX CS
  Herpes_LMP1 263 gpqdpdntddngphdplpqdpdntddngpqdpdntddng..phdplphspsdsagndggpp 321
                    ++ d+  ++  +++l qd +n   n  ++ + t  n    +d + h+       + g p
   CCD26034.2 198 EEEEDDKLKEEKEREAL-QDRQNISGNNKNNDNMTRFNSipGKDHFSHDTDHQDQTQLGTP 257
                  99999999998866665.8999998887776666665542135666666655555555554 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   0.7       2.5   7.5e+03      78      95 ..     107     124 ..     104     128 .. 0.46
   2 ?   12.8   0.3   1.3e-05     0.038     229     339 ..     181     290 ..     151     316 .. 0.63

  Alignments for each domain:
  == domain 1  score: -4.7 bits;  conditional E-value: 2.5
  Presenilin  78 lvlLykyrcykvikgwli 95 
                 l+ L+ + ++++++++++
  CCD26034.2 107 LMSLFLLFFVEIVTHYFV 124
                 444444444444444444 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 1.3e-05
  Presenilin 229 kaevaeseeeeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekeseessesseeeeeeeeeeeeseseergvkLGLG 327
                 + + a+s+++ + ++++ee+++++ +ee+e+e+ +++++ s +++++++ ++ ++   + + +++++++++++  +  eee++e+  ++      L +G
  CCD26034.2 181 NCKLAQSAQNPDDDDDDEEEEDDKLKEEKEREALQDRQNISGNNKNNDNMTRFNSIPGKDHFSHDTDHQDQTQLGTPIEEEDKEQYLNQMFAVFILEFG 279
                 333444444444444444555555555555555555555555666666666666666666666666666666555666666666666666678899999 PP

  Presenilin 328 DFiFYSvLvgkA 339
                   iF Sv vg +
  CCD26034.2 280 -IIFHSVFVGLS 290
                 .9*******965 PP

>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   8.1   0.00072       2.2     219     362 ..     145     311 ..     130     320 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.00072
        RRN3 219 dlddeedeeleeelee............................deddedddeddeesdlddlssdeeaeedeekdeeeesl...kkikelvekLDail 286
                 d  d++de+  + +e+                            +  + ddd+ddee+++d+l++++e+e  +    + +++   +k ++++++  +i 
  CCD26034.2 145 DDADSSDESITSYTEDhpvilprrshndienqfqksncklaqsaQ--NPDDDDDDEEEEDDKLKEEKEREALQ----DRQNIsgnNKNNDNMTRFNSIP 237
                 444444443333333366666666655555555545554443221..22222222222222222222222211....1112211144444445555553 PP

        RRN3 287 .tllfehlekkfssestkeeeeeeeglelfntLlslFkstiLptyksrhvqFllFhfssldpeladkflglLidial 362
                  +   +h+++ + ++++++  +  e+++  + L ++F  +iL+     h  F+ + +s   +e++  f++l +++++
  CCD26034.2 238 gK---DHFSHDTDHQDQTQLGTPIEEEDKEQYLNQMFAVFILEFGIIFHSVFVGLSLSVSGEEFETLFIVLTFHQMF 311
                 13...334333333333333333444466678889999999999999999999999999999999999999888877 PP

>> BSP_II  Bone sialoprotein II (BSP-II)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  15.3     0.001         3      79     205 ..     137     264 ..     126     273 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.001
      BSP_II  79 snenedeeseaenttlsattpgygeektqgkgsiGlaaiklpkkagdieekatkeeesdeeeeeeeeeeneeeeaevdeneqgvngtstnsteaengng 177
                  n n   +++a+++  s t  ++ +     + s    + ++ k + ++++ a++ +++d++eeee+++ +ee+e e  ++ q + g ++n+ +    n+
  CCD26034.2 137 NNINSVHDDDADSSDESITSYTEDHPVILPRRSHNDIENQFQKSNCKLAQSAQNPDDDDDDEEEEDDKLKEEKEREALQDRQNISGNNKNNDNMTRFNS 235
                 35555555566666666555333333333333333334456666777888888888888888888889999999999999999*******999999999 PP

      BSP_II 178 ssggdn.geeeeeesvteaeaegteveee 205
                   g d+   + +++++t+  +  +e+++e
  CCD26034.2 236 IPGKDHfSHDTDHQDQTQLGTPIEEEDKE 264
                 99999977777777777765444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1226  (0.0683808); expected 358.6 (0.02)
Passed bias filter:                      560  (0.0312343); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.61u 0.31s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 2980.75
//
Query:       CCD26035.2  [L=958]
Description: hypothetical protein NDAI_0G02580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-48  161.7  32.1    6.6e-07   29.9   0.3   11.4 11  WD40         WD domain, G-beta repeat
    1.5e-21   76.7   0.2    3.1e-21   75.7   0.2    1.6  1  Utp12        Dip2/Utp12 Family
      1e-16   61.0   8.1    0.00024   21.3   0.0    8.6  9  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.6e-06   27.1   3.3       0.02   13.6   0.0    5.3  4  Nup160       Nucleoporin Nup120/160
    1.9e-06   27.5  18.1      4e-05   23.1   0.4    5.8  7  WD40_like    WD40-like domain
     0.0071   16.1   0.7       0.75    9.5   0.0    3.7  4  Hira         TUP1-like enhancer of split
  ------ inclusion threshold ------
      0.018   13.7   0.0       0.46    9.0   0.0    2.6  3  ELYS-bb      beta-propeller of ELYS nucleoporin
       0.24   11.2   3.9       0.67    9.8   0.0    3.8  6  eIF2A        Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00022      0.48      17      38 .]      86     107 ..      69     107 .. 0.90
   2 !   22.1   0.4     9e-08    0.0002       5      38 .]     115     149 ..     111     149 .. 0.90
   3 !   14.7   0.1   1.9e-05     0.044       5      38 .]     157     201 ..     153     201 .. 0.73
   4 !   10.6   0.3   0.00038      0.85       2      37 ..     206     240 ..     205     241 .. 0.65
   5 !   19.9   0.0   4.4e-07   0.00099       4      38 .]     394     430 ..     391     430 .. 0.87
   6 ?   -0.5   0.0       1.2   2.8e+03      13      38 .]     446     470 ..     434     470 .. 0.67
   7 !   22.4   0.2     7e-08   0.00016       9      38 .]     483     513 ..     475     513 .. 0.89
   8 !    7.2   0.0    0.0045        10      12      37 ..     545     570 ..     534     570 .. 0.85
   9 !   21.3   0.0   1.6e-07   0.00035       5      37 ..     579     612 ..     575     612 .. 0.90
  10 !   15.9   0.3   7.9e-06     0.018       2      38 .]     618     655 ..     617     655 .. 0.92
  11 !   29.9   0.3     3e-10   6.6e-07       2      37 ..     660     696 ..     659     697 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00022
                 EEETTSSEEEEEETTSEEEEEE CS
        WD40  17 afspdgawlasGsdDgtvriWd 38 
                 + ++d ++la G  Dg +++Wd
  CCD26035.2  86 QHHKDTNLLAVGYNDGVIKVWD 107
                 57889999****99*******9 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 9e-08
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                   l GH s +t l+f++ g+ l+sGs+D ++ +Wd
  CCD26035.2 115 CNLNGHsSAITVLKFDSTGTRLISGSRDSNIIVWD 149
                 5689**666*************************9 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 1.9e-05
                 EEEESSSS.EEEEE..........EETTSSEEEEEETTSEEEEEE CS
        WD40   5 rtltGHss.vtsla..........fspdgawlasGsdDgtvriWd 38 
                 ++l+ H++ +t++              + +wl+s s+Dg ++iWd
  CCD26035.2 157 YKLRSHKDaITGIWcnemqnngedDENELDWLISTSKDGLIKIWD 201
                 5677784447777666666666666666689**99*********9 PP

  == domain 4  score: 10.6 bits;  conditional E-value: 0.00038
                 EEEEEEESS.SS.....E.EEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ss.....v.tslafspdgawlasGsdDgtvriW 37 
                 qc+ t  +H +      v ++l        l++ s D  ++iW
  CCD26035.2 206 QCIETHIAHtGEcwsvaVrNDL--------LITTSSDSQIKIW 240
                 7888888995444454444444........775544******* PP

  == domain 5  score: 19.9 bits;  conditional E-value: 4.4e-07
                 EEE..EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrt..ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l+t  l G+ ++++s++ s+d+++la++s +g ++iW+
  CCD26035.2 394 LHTieLQGQrTDIRSIDISDDNKLLATAS-NGLLKIWN 430
                 555336799999*****************.*******8 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 1.2
                 EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriWd 38 
                    ++f p g++++ G++ g + ++d
  CCD26035.2 446 L-TCKFLPGGTLVIVGTRGGELQLFD 470
                 3.56799*****99998877776665 PP

  == domain 7  score: 22.4 bits;  conditional E-value: 7e-08
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +H   ++sl+  +dg+ l++Gs D++v++Wd
  CCD26035.2 483 AHdAAIWSLDLTSDGKRLVTGSADKSVKFWD 513
                 89666*************************9 PP

  == domain 8  score: 7.2 bits;  conditional E-value: 0.0045
                 SEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 svtslafspdgawlasGsdDgtvriW 37 
                 ++ s++ sp+ ++la +  D+tv+++
  CCD26035.2 545 DILSVKISPEDKFLAVSLLDNTVKVF 570
                 499***********98877*****95 PP

  == domain 9  score: 21.3 bits;  conditional E-value: 1.6e-07
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  +l GH  +v s++ s d+++++++s D++++iW
  CCD26035.2 579 LSLYGHkLPVLSIDISFDSKLIITSSADKNIKIW 612
                 5788**777****************99******* PP

  == domain 10  score: 15.9 bits;  conditional E-value: 7.9e-06
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +c ++l +H +s+  ++f p+++ ++s+s+Dg ++ Wd
  CCD26035.2 618 DCHKSLFAHqDSIMNVKFVPESHNFFSCSKDGLIKYWD 655
                 67888889*888*************************9 PP

  == domain 11  score: 29.9 bits;  conditional E-value: 3e-10
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +c+++l GH s v+s+a   d ++++s+s D+++riW
  CCD26035.2 660 ECIQKLAGHqSEVWSIAIANDASFIVSSSHDHSIRIW 696
                 79*******777**************9999******* PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.2   1.4e-24   3.1e-21       2     107 .]     817     925 ..     816     925 .. 0.96

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 1.4e-24
                 HHHHHH.HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH.HTTT...THHHHHHHHHHHHHHHHHHHHHSH..HHHHHHHHHHHHHHHHHHHHHHHHH CS
       Utp12   2 deelleevlekippsdirltvlrLpssyvlkLLeflaerlaeksp...hlelllrwlkallrvHgsylvasps.dlvpaLrslqkslrerlktlskllg 96 
                 +e++++ +l +i+ps++++++l+Lp+sy+ k+L+f+  ++++k+    hl l++r+l++++++++++lv++++ +l++++++++ +lr+ lk+ ++ lg
  CCD26035.2 817 EEYIMD-TLVRIKPSQLEDALLVLPFSYIIKFLKFIDIVINSKKIlnnHLPLICRILFFIVKSNHKELVSQKNeELKSQITRVKDNLRNALKNNEDDLG 914
                 899999.*******************************9999984555*************************************************** PP

                 HHHHHHHHHHH CS
       Utp12  97 lnlgrLdylls 107
                 +n+++L+++++
  CCD26035.2 915 FNIQGLKFIKQ 925
                 ********975 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.1e-07   0.00024      34      90 ..      75     130 ..      33     132 .. 0.81
   2 ?    5.1   0.0     0.012        28      37      85 ..     120     167 ..     117     173 .. 0.88
   3 ?   -1.4   0.0       1.3   2.9e+03      54      82 ..     189     217 ..     184     243 .. 0.67
   4 ?    1.3   0.1      0.19   4.2e+02       7      82 ..     225     313 ..     218     358 .. 0.73
   5 !    9.1   0.0   0.00069       1.6      30      81 ..     395     445 ..     390     452 .. 0.85
   6 !   12.6   0.0   5.8e-05      0.13       8      70 ..     455     517 ..     448     532 .. 0.88
   7 !    7.2   0.0    0.0028       6.3      36      72 ..     541     577 ..     529     591 .. 0.82
   8 ?    2.2   0.0       0.1   2.3e+02      38      89 ..     585     635 ..     578     638 .. 0.88
   9 ?    1.7   0.1      0.15   3.3e+02      35      72 ..     666     703 ..     652     714 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.1e-07
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  ++++  e + L+ ++d +lLav+y+dg +++ d +s++v+ +l+ +s+ a+t l++ 
   CCD26035.2  75 KSTKPAETTYLQHHKDTNLLAVGYNDGVIKVWDLYSKTVLCNLNGHSS-AITVLKFD 130
                  5566678899**********************************9999.6*999986 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.012
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavt 85 
                  ++s ++ L++   g+ L  +  d+++ + d  s+  + +l+ +++ a+t
   CCD26035.2 120 HSSAITVLKFDSTGTRLISGSRDSNIIVWDLVSEVGLYKLRSHKD-AIT 167
                  6789****************************9999999999988.465 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 1.3
  ANAPC4_WD40  54 avaysdgevrlldaesgkvvhslsvksek 82 
                      +dg +++ d + ++++++  +++ +
   CCD26035.2 189 ISTSKDGLIKIWDLKIQQCIETHIAHTGE 217
                  55667777777777777777766665554 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.19
  ANAPC4_WD40   7 mDLiAlatedgellvfRlng.............qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksek 82 
                  +DL+   ++d+++ +  ln              + +++ ++++++ +++ +    +  ++ +  +d +v+++   +++ +++   k++k
   CCD26035.2 225 NDLLITTSSDSQIKIWELNLdndddgknkklieKGIYEKQSKQRGLSIEFIDTADETGFFYIQNADKTVEIFRLRKQDEINKAIKKRTK 313
                  68888888888888888888777888876666666777788888888888888888888889999999999988888888877766665 PP

  == domain 5  score: 9.1 bits;  conditional E-value: 0.00069
  ANAPC4_WD40  30 wtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                   t+e +++   +rs+  + d+klLa a s+g +++ +++++ ++++++++ +
   CCD26035.2 395 HTIELQGQRTDIRSIDISDDNKLLATA-SNGLLKIWNIKTKSCIRTFECGYS 445
                  56666788899*************986.89******************9987 PP

  == domain 6  score: 12.6 bits;  conditional E-value: 5.8e-05
  ANAPC4_WD40   8 DLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                   L+ ++t  gel++f l    + ++ ed++d  + sL    dgk L+ + +d +v++ d + +
   CCD26035.2 455 TLVIVGTRGGELQLFDLASSTLLETIEDAHDAAIWSLDLTSDGKRLVTGSADKSVKFWDFQLE 517
                  588899999****************9******************************9997655 PP

  == domain 7  score: 7.2 bits;  conditional E-value: 0.0028
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  + +  + s++ +p++k+Lav+  d++v+++ + + k 
   CCD26035.2 541 ELNDDILSVKISPEDKFLAVSLLDNTVKVFFMDTMKF 577
                  567789999*******************987777665 PP

  == domain 8  score: 2.2 bits;  conditional E-value: 0.1
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +  v s+  + d kl+  + +d ++++     g++ +sl +++++ ++ +++
   CCD26035.2 585 KLPVLSIDISFDSKLIITSSADKNIKIWGLDFGDCHKSLFAHQDS-IMNVKF 635
                  67788999999*************************999999995.877765 PP

  == domain 9  score: 1.7 bits;  conditional E-value: 0.15
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkv 72 
                  ++++sev s+a  +d ++++ + +d ++r+ +  + +v
   CCD26035.2 666 AGHQSEVWSIAIANDASFIVSSSHDHSIRIWEETEDEV 703
                  56899*************************99877776 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.018        40     228     251 ..      84     112 ..      47     121 .. 0.77
   2 !    3.7   0.1    0.0085        19     233     259 ..     188     215 ..     181     292 .. 0.76
   3 !   13.6   0.0   8.8e-06      0.02     223     258 ..     406     442 ..     387     485 .. 0.88
   4 ?    1.5   0.1     0.041        91     229     287 ..     596     648 ..     582     697 .. 0.45

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.018
                 ......TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 228 i.....gqtylfalsrdgkLrvWnlltgk 251
                       + ++l++ + dg+++vW+l +++
  CCD26035.2  84 YlqhhkDTNLLAVGYNDGVIKVWDLYSKT 112
                 33344578888888999999999987766 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.0085
                 EEEEETT-EEEEEETTTTEEEEE.EE-- CS
      Nup160 233 lfalsrdgkLrvWnlltgkclat.idll 259
                 l + s dg +++W+l+ ++c++t i  +
  CCD26035.2 188 LISTSKDGLIKIWDLKIQQCIEThIAHT 215
                 6677999***************977665 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 8.8e-06
                 T......TTTEEEEEETT-EEEEEETTTTEEEEEEE- CS
      Nup160 223 vavvei.gqtylfalsrdgkLrvWnlltgkclatidl 258
                 ++ ++i +++ l+a  ++g L++Wn++t++c++t+++
  CCD26035.2 406 IRSIDIsDDNKLLATASNGLLKIWNIKTKSCIRTFEC 442
                 45555568899999999*****************988 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.041
                 TTTEEEEEETT-EEEEEETTTTEEEEEEE--.-SSSTTS--SSEESEEESSSSEEEE.. CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclatidllrdeeaqdessskstldpaesslirvsdg 287
                 +++++ + s d+++++W l+ g c  +          ++s    + +p++ ++ ++s++
  CCD26035.2 596 DSKLIITSSADKNIKIWGLDFGDCHKSLFAH------QDSIMNVKFVPESHNFFSCSKD 648
                 5556666666666666655555444443333......2333333334444444444422 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.019        42      91     159 ..      90     162 ..      81     175 .. 0.62
   2 !    6.7   0.6    0.0017       3.8       7     112 ..     128     245 ..     122     254 .. 0.82
   3 !    4.3   0.0    0.0095        21      11      49 ..     453     491 ..     404     527 .. 0.45
   4 ?    1.3   0.0     0.075   1.7e+02      36      90 ..     500     551 ..     482     573 .. 0.74
   5 !   23.1   0.4   1.8e-08     4e-05       3      66 ..     588     652 ..     586     684 .. 0.90
   6 ?   -1.4   0.0       0.5   1.1e+03       1      33 [.     670     701 ..     670     710 .. 0.81
   7 ?   -1.2   0.7      0.46     1e+03      39      89 ..     848     899 ..     841     904 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.019
   WD40_like  91 iddklliGtnkGsiyv...fskdlqleevllgqsseIkeikienn..kiysLs.esafivfdlfsqnieykisvk 159
                 + + l++G n G i v   +sk + +   l g+ss I  +k ++   ++ s s +s+ iv+dl s+  +yk+  +
  CCD26035.2  90 DTNLLAVGYNDGVIKVwdlYSKTVLC--NLNGHSSAITVLKFDSTgtRLISGSrDSNIIVWDLVSEVGLYKLRSH 162
                 45678888888888883333333222..23578888877776643124444442567888888887777776544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0017
   WD40_like   7 diskkgslilyGgkddkctvlkleslesvsivesfedSv..ifvkllddd.........lilvvtlDGtillslleneeeveneki.eedistvkvidd 93 
                  ++  g+ ++ G++d ++ v +l s+   + + s +d +  i+++ ++++          ++ ++ DG i   +l+ ++ +e++     +   v v +d
  CCD26035.2 128 KFDSTGTRLISGSRDSNIIVWDLVSEVGLYKLRSHKDAItgIWCNEMQNNgeddeneldWLISTSKDGLIKIWDLKIQQCIETHIAhTGECWSVAVRND 226
                 56678889999***************************9888*****9987777888766778889*************88776441456677788888 PP

   WD40_like  94 klliGtnkGsiyvfskdlq 112
                  l+  ++  +i +++ +l 
  CCD26035.2 227 LLITTSSDSQIKIWELNLD 245
                 8877777888888877765 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.0095
   WD40_like  11 kgslilyGgkddkctvlkleslesvsivesfedSvifvk 49 
                  g+l+++G +  ++++++l s ++   +e+ +d  i++ 
  CCD26035.2 453 GGTLVIVGTRGGELQLFDLASSTLLETIEDAHDAAIWSL 491
                 234444444444444444444444444444444444443 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.075
   WD40_like  36 sivesfedSvifvklldddlilvvtlDGtillslleneeevenekieedistvkv 90 
                  +  s + Sv f  +  ++ ++ +t+D ++ + +l ++    + ++++di  vk+
  CCD26035.2 500 LVTGSADKSVKFWDFQLEQELVAGTVDKYLPKLKLFHDT---TLELNDDILSVKI 551
                 444455679999999999999999999999888888887...5677888877665 PP

  == domain 5  score: 23.1 bits;  conditional E-value: 1.8e-08
   WD40_like   3 iYsidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtil 66 
                 + sidis++++li+  + d+++++  l+ ++   ++   +dS++ vk++ +   +  ++ DG i 
  CCD26035.2 588 VLSIDISFDSKLIITSSADKNIKIWGLDFGDCHKSLFAHQDSIMNVKFVPEShNFFSCSKDGLIK 652
                 789*****************************99999************775489********94 PP

  == domain 6  score: -1.4 bits;  conditional E-value: 0.5
   WD40_like   1 eeiYsidiskkgslilyGgkddkctvlklesle 33 
                 +e++si i +++s+i+  ++d+ +++ +    +
  CCD26035.2 670 SEVWSIAIANDASFIVSSSHDHSIRIWEETE-D 701
                 699********************99987443.3 PP

  == domain 7  score: -1.2 bits;  conditional E-value: 0.46
   WD40_like  39 esfedSvifvkllddd.lilvvtlDGtillsllenee..evenekieedistvk 89 
                  +f d vi +k + ++ l l++ +   i   + +++e  + +ne+++ +i+ vk
  CCD26035.2 848 LKFIDIVINSKKILNNhLPLICRILFFI--VKSNHKElvSQKNEELKSQITRVK 899
                 5788999998876665267999998777..444444422556677777777665 PP

>> Hira  TUP1-like enhancer of split
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.15   3.4e+02      18      46 ..      86     116 ..      79     152 .. 0.76
   2 ?    0.6   0.0      0.18     4e+02      22      44 ..     186     208 ..     181     215 .. 0.86
   3 !    9.5   0.0   0.00033      0.75      20      44 ..     413     437 ..     405     449 .. 0.88
   4 ?   -3.0   0.0       2.1   4.7e+03      65      92 ..     482     509 ..     456     517 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.15
        Hira  18 essg..syLlavtsvgllyvWnvkkkkvllp 46 
                 + ++  + L++  ++g + vW++ +k+vl +
  CCD26035.2  86 QHHKdtNLLAVGYNDGVIKVWDLYSKTVLCN 116
                 555543555566789********99998764 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.18
        Hira  22 syLlavtsvgllyvWnvkkkkvl 44 
                 ++L+  +++gl+ +W++k ++++
  CCD26035.2 186 DWLISTSKDGLIKIWDLKIQQCI 208
                 7999999**********999985 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00033
        Hira  20 sgsyLlavtsvgllyvWnvkkkkvl 44 
                  +++Lla  s+gll +Wn+k+k+++
  CCD26035.2 413 DDNKLLATASNGLLKIWNIKTKSCI 437
                 4599******************996 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 2.1
        Hira  65 ltrapavtsasltsnGvpivtlsngdgy 92 
                  + + a+ s  lts G+ +vt s  ++ 
  CCD26035.2 482 DAHDAAIWSLDLTSDGKRLVTGSADKSV 509
                 4567788888999999999998877765 PP

>> ELYS-bb  beta-propeller of ELYS nucleoporin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00021      0.46     222     251 ..      81     110 ..      71     133 .. 0.80
   2 ?    1.5   0.0     0.039        88     229     251 ..     411     433 ..     399     443 .. 0.88
   3 ?   -4.1   0.0         2   4.5e+03      37      85 ..     642     690 ..     639     696 .. 0.81

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00021
     ELYS-bb 222 avsalsyisrtnqlavgfsdgylslwnlkt 251
                   + l++ + tn lavg+ dg +++w+l +
  CCD26035.2  81 ETTYLQHHKDTNLLAVGYNDGVIKVWDLYS 110
                 4567899999****************9854 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.039
     ELYS-bb 229 isrtnqlavgfsdgylslwnlkt 251
                 is  n+l    s+g l++wn+kt
  CCD26035.2 411 ISDDNKLLATASNGLLKIWNIKT 433
                 77889*****************8 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 2
     ELYS-bb  37 kfsagrsglawlacgpqlevvnsvtgerlsaykfsglseeppvvlavke 85 
                  fs+ ++gl     g+++e ++ ++g++   + ++ +++ + +v + ++
  CCD26035.2 642 FFSCSKDGLIKYWDGDKFECIQKLAGHQSEVWSIAIANDASFIVSSSHD 690
                 5899999999999999999999999999888888877777777766665 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.2   2.6e+03     123     157 ..      99     135 ..      75     145 .. 0.67
   2 ?   -3.4   0.1       3.3   7.4e+03     125     162 ..     195     232 ..     194     243 .. 0.52
   3 ?   -2.9   0.0       2.3   5.2e+03      38      63 ..     280     305 ..     277     312 .. 0.83
   4 ?    9.8   0.0    0.0003      0.67     124     160 ..     423     459 ..     340     468 .. 0.81
   5 ?   -2.1   0.0       1.3   2.9e+03      71      91 ..     495     515 ..     461     525 .. 0.55
   6 ?   -1.9   0.0       1.2   2.6e+03     124     162 ..     648     688 ..     596     700 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.2
                 SS-EEEEEETTTTEEEEEEE..-TT--EEEE-TTSSE CS
       eIF2A 123 laGeleiwdvkkkkkiakae..aanatlvewspdgry 157
                   G +++wd  +k+ + +++  ++  t+++++ +g+ 
  CCD26035.2  99 NDGVIKVWDLYSKTVLCNLNghSSAITVLKFDSTGTR 135
                 3589999999988877766411445577788877765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.3
                 -EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEEEE CS
       eIF2A 125 GeleiwdvkkkkkiakaeaanatlvewspdgryvlTat 162
                 G ++iwd k  ++i++  a +          ++++T +
  CCD26035.2 195 GLIKIWDLKIQQCIETHIAHTGECWSVAVRNDLLITTS 232
                 67888888877776665444433333334444444444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.3
                 EEEEEESSSTT--EEECCEESSS.EE CS
       eIF2A  38 etelyliklkkkksevvelkkegpih 63 
                 et  ++i+  +k +e+++l+k+ +i 
  CCD26035.2 280 ETGFFYIQNADKTVEIFRLRKQDEIN 305
                 66789999999999999999998886 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.0003
                 S-EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEEE CS
       eIF2A 124 aGeleiwdvkkkkkiakaeaanatlvewspdgryvlT 160
                 +G l+iw+ k+k++i ++e+  + ++++ p g++v+ 
  CCD26035.2 423 NGLLKIWNIKTKSCIRTFECGYSLTCKFLPGGTLVIV 459
                 6889*****************************9985 PP

  == domain 5  score: -2.1 bits;  conditional E-value: 1.3
                 SS-EEEEESSSSCEEEEEECS CS
       eIF2A  71 skefaviyGkmpakvslfdlk 91 
                 s+   ++ G ++++v+++d +
  CCD26035.2 495 SDGKRLVTGSADKSVKFWDFQ 515
                 333345666666666666665 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 1.2
                 S-EEEEEETTTTEEEEEEE-TT--E..EEE-TTSSEEEEEE CS
       eIF2A 124 aGeleiwdvkkkkkiakaeaanatl..vewspdgryvlTat 162
                  G ++ wd +k+++i+k+   ++ +  +   +d ++++ ++
  CCD26035.2 648 DGLIKYWDGDKFECIQKLAGHQSEVwsIAIANDASFIVSSS 688
                 46688999999999998876665441145555666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (958 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1170  (0.0652574); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.48
# Mc/sec: 5972.14
//
Query:       CCD26036.2  [L=286]
Description: hypothetical protein NDAI_0G02590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-28   97.2   8.8    1.1e-23   83.9   5.9    2.5  2  Cullin_binding  Cullin binding
    4.9e-06   26.3   0.5    4.7e-05   23.1   0.1    2.5  2  UBA_4           UBA-like domain
  ------ inclusion threshold ------
      0.035   13.7   0.1       0.11   12.1   0.1    1.9  1  HARP            HepA-related protein (HARP)


Domain annotation for each model (and alignments):
>> Cullin_binding  Cullin binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.1e-05     0.068       1      31 [.     127     158 ..     127     170 .. 0.86
   2 !   83.9   5.9   1.9e-27   1.1e-23      34     120 .]     191     279 ..     185     279 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.1e-05
  Cullin_binding   1 klkkkleklrkel.sdkekfkkvYeftFelak 31 
                     ++++ l++l+ +l +d ++f+++Y++tF+l+ 
      CCD26036.2 127 QMQHVLNDLDVKLhQDASYFTQIYNYTFDLII 158
                     588999*******777799*********9976 PP

  == domain 2  score: 83.9 bits;  conditional E-value: 1.9e-27
  Cullin_binding  34 gqksldletaielwklllkekea...tkkeelleqwieFleeekkekkaiskDtWnqlleFakkvke.dedlskYdeegAWPvliDeFvey 120
                     +  +ld+etai++wk++++ +e+   + ++ell+ w++Fl+ee   kk i+kD+W++lleF+kk+++ +   ++Yde++AWP++iDeF+ey
      CCD26036.2 191 KDNNLDVETAIAYWKVFFNVNEQypvKVNKELLSLWFQFLNEE--RKKEITKDQWQMLLEFFKKFSNlEMMKQNYDETAAWPYMIDEFYEY 279
                     5679**************8775467778889*********888..478*****************99767889****************98 PP

>> UBA_4  UBA-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   7.8e-09   4.7e-05      18      39 ..       2      23 ..       1      26 [. 0.93
   2 ?    0.3   0.0      0.11   6.4e+02      25      34 ..     193     202 ..     191     206 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 7.8e-09
       UBA_4 18 ArqlLeannWdLerAislyFds 39
                A+++L +nnW L+ A++ y+d 
  CCD26036.2  2 AKKYLSRNNWRLNYALNEYYDK 23
                89******************94 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.11
       UBA_4  25 nnWdLerAis 34 
                 nn d+e+Ai+
  CCD26036.2 193 NNLDVETAIA 202
                 7888888886 PP

>> HARP  HepA-related protein (HARP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   1.9e-05      0.11       6      24 ..      47      65 ..      44      95 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.9e-05
        HARP  6 gYheelIavFKqipSrnYd 24
                +Y +elIa+FK+ +S+n d
  CCD26036.2 47 KYPQELIALFKKYSSKNND 65
                799*************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2078.06
//
Query:       CCD26037.2  [L=911]
Description: hypothetical protein NDAI_0G02600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-20   72.8   2.8    1.2e-19   70.5   0.2    3.5  3  ANAPC2    Anaphase promoting complex (APC) subunit 2
  ------ inclusion threshold ------
      0.021   14.4   0.6      0.045   13.3   0.1    1.8  2  FANCI_S1  FANCI solenoid 1


Domain annotation for each model (and alignments):
>> ANAPC2  Anaphase promoting complex (APC) subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.18   1.6e+03      16      36 ..     267     284 ..     266     295 .. 0.66
   2 ?   -1.9   0.1      0.56     5e+03      34      59 ..     749     776 ..     743     777 .. 0.75
   3 !   70.5   0.2   1.4e-23   1.2e-19       1      59 [.     848     908 ..     848     908 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.18
      ANAPC2  16 RIhsmLkmfvpkdegydisde 36 
                 RI   Lk++v   ++++is  
  CCD26037.2 267 RINESLKIMV---SNFPISTP 284
                 9999******...45555433 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.56
      ANAPC2  34 sdeeLkefLdelvkegkLels..gGkYk 59 
                  +++L+e  + +v+++ L l+  +G+Yk
  CCD26037.2 749 GKQKLEECIQFWVDKKVLYLDddDGCYK 776
                 6789999999999999998651167887 PP

  == domain 3  score: 70.5 bits;  conditional E-value: 1.4e-23
      ANAPC2   1 fIvgMLtNlgslpleRIhsmLkmfvpkdegyd.isdeeLkefLdelvkegkLe.lsgGkYk 59 
                 fI+gML+Nlgs++le+Ihs+Lkm+vp+d +y+ i +++L+++L+ lv+++kLe +++G +k
  CCD26037.2 848 FINGMLENLGSMKLEKIHSFLKMTVPRDFEYNrIAIHQLENYLNGLVEDEKLEtTTDGAFK 908
                 9****************************************************99999987 PP

>> FANCI_S1  FANCI solenoid 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   5.1e-06     0.045     108     142 ..     300     334 ..     288     344 .. 0.82
   2 ?   -3.8   0.1      0.87   7.8e+03      24      47 ..     381     404 ..     372     434 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.1e-06
    FANCI_S1 108 ppqivvslasmfrdlkLskeelelvvekllrslkk 142
                  +++++  +++frd +Ls+e l+l+v+k+l+ ++ 
  CCD26037.2 300 RENVSTTATTTFRDTNLSEEYLKLFVKKFLKDFQR 334
                 3567899999********************99974 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.87
    FANCI_S1  24 lasdlislLlleldklsgdhlvel 47 
                  + d++++Ll  + +l++ +l +l
  CCD26037.2 381 RTTDIVNILLYAMLNLNEMELHKL 404
                 567888888888888887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       744  (0.041497); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.44
# Mc/sec: 6205.86
//
Query:       CCD26038.2  [L=260]
Description: hypothetical protein NDAI_0G02610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-11   44.7   0.0    2.4e-11   43.7   0.0    1.5  2  GATase         Glutamine amidotransferase class-I
  ------ inclusion threshold ------
      0.028   14.2   0.0      0.048   13.4   0.0    1.4  1  Peptidase_C26  Peptidase C26


Domain annotation for each model (and alignments):
>> GATase  Glutamine amidotransferase class-I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.31   2.8e+03     115     162 ..      13      60 ..       4      66 .. 0.60
   2 !   43.7   0.0   2.7e-15   2.4e-11      72     179 ..     109     212 ..      40     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.31
                 GTTTTSEEEEEEEEEEEEESG..CHHHTTEEEEEEEETTEEEEEEEEETT CS
      GATase 115 lyglknevierhrHryevnpk..elepaglevtakseddeelmeiiekkn 162
                 +y + ++ + +h H+  v+ +   le+++++ t ++ +  ++  i++++ 
  CCD26038.2  13 FYTD-EDAEWTHPHGNFVTMAqnLLENSKIDSTLETIEY-QVFNIVQNEF 60 
                 5555.6667778888777766444455555555555444.6666666665 PP

  == domain 2  score: 43.7 bits;  conditional E-value: 2.7e-15
                 S-EEEETHHHHHHHHHTTTEEEEEECEEEEEEEEEEEETTT..CGGTTTTSEEEEEEEEEEEEESGCHHHTTEEEEEEEETTEEEEEEEEETTTEEEES CS
      GATase  72 iPiLGICLGmQllaiefgrkvvkekekehhggtmrlgddet..allyglknevierhrHryevnpkelepaglevtakseddeelmeiiekknpfvgvQ 168
                  P+ GIC+G+Q++a ++g kv ++  k+   g  +++ ++   +++  + ++++ ++ H++ + +    p+gl   + s d + + ++  k++ +  +Q
  CCD26038.2 109 PPVVGICFGHQVIAAALGNKVDRNP-KGLEAGVVEVKLNDMgqEIFGTDRPSLNLSMLHNDIAYE---IPDGLSNWGGS-DICDIQGFYLKNR-ILTFQ 201
                 59********************888.666666666665444559999999***************...*******9999.7778888887776.***** PP

                 SBTTSTTSTTH CS
      GATase 169 FHPEststpeg 179
                  HPE++    +
  CCD26038.2 202 GHPEFINDVAK 212
                 *****987765 PP

>> Peptidase_C26  Peptidase C26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   5.3e-06     0.048      88     126 ..      91     129 ..      62     148 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.3e-06
  Peptidase_C26  88 peRdalelaLiraalergvPilgiCrGlqllnvalGGtl 126
                    + R  l+  L  +  +   P+ giC G+q+++ alG ++
     CCD26038.2  91 NLRSFLKRLLSLENSKMMPPVVGICFGHQVIAAALGNKV 129
                    5566677777778888888****************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.43
# Mc/sec: 1833.44
//
Query:       CCD26039.2  [L=590]
Description: hypothetical protein NDAI_0G02620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-72  243.4  13.7    3.7e-72  243.4  13.7    2.1  2  Asp             Eukaryotic aspartyl protease
    5.5e-11   43.0   6.2    5.5e-11   43.0   6.2    3.1  2  TAXi_N          Xylanase inhibitor N-terminal
  ------ inclusion threshold ------
      0.049   13.7   0.1        0.3   11.1   0.0    2.3  2  GcnA_N          N-acetyl-beta-D-glucosaminidase N-terminal do
      0.092   13.4   1.1         13    6.6   0.4    3.5  2  Asp_protease_2  Aspartyl protease
        2.4    7.6   3.6        3.7    7.0   3.6    1.2  1  Lin-8           Ras-mediated vulval-induction antagonist
        2.9    7.4   8.5        4.3    6.9   8.5    1.2  1  DUF572          Family of unknown function (DUF572)


Domain annotation for each model (and alignments):
>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.4  13.7   1.2e-75   3.7e-72       2     315 .]      78     423 ..      77     423 .. 0.91
   2 ?  -13.0  13.3         6   1.8e+04      36      71 ..     532     568 ..     483     572 .. 0.63

  Alignments for each domain:
  == domain 1  score: 243.4 bits;  conditional E-value: 1.2e-75
                 EEEEEEETTTTEEEEEEEETT--SEEEEBTT.................ESTSHCHHTSS-B-GGG-TT-EEEEEEEEEECTTS.EEEEEEEEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
         Asp   2 YfgeisiGtpeqkftvifDTGSsdlWVpssk.................ckkssackshstydpskSstykkngkslsisYGdg.svsGflsqdtvkvgg 82 
                 Y  e+++Gtp+qk+tv++DTGSsd+WV+ss+                 ++ +++c+++ t+d+skSst+++n +++ isYGdg  ++G++++d +k+++
  CCD26039.2  78 YSVEVEMGTPSQKLTVLLDTGSSDFWVTSSDnpycgttstegslyggeTQDTIDCSTYGTFDSSKSSTFQSNDTDFLISYGDGsFAEGTWGTDVIKLDD 176
                 899********************************************98889*******************************99************86 PP

                 .EEEEEEEEEEEEEESSHHHTTSSSSEEEE-S.......-GGGSCGG..SCCHHHH....HHHTTSSSSSEEEEEE-STTSSEEEEEESSEEGGGEEEE CS
                 .xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxx..xxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp  83 .ltvknqefgeatkepgstflaakfdGiLGlg.......fkeisvee..atpvfdn....lvsqglikepvfsvylnreeeeggeivfGgvDeskykGs 167
                  l++++  ++ a+++++         G+LG+g       +++ ++++  +++++dn    l++ gli++ ++s+yln +++++g+i+fGgvD+sky+G+
  CCD26039.2 177 sLSLNDVSVAVASSTNS-------SMGVLGIGlrplettYSSTKSVNekTSYMYDNfpisLKKSGLIESTAYSLYLNDPSSKSGNILFGGVDHSKYTGQ 268
                 48999999999999988.......58******666666655555554555666999******************************************* PP

                 EEEEEESS.......TSSTEEEEEEEEETTEEE....EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTG.GGGSEEEEEEETT CS
                 xxxxxxxx.......xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxx RF
         Asp 168 ltyvpvts.......kgywqielesvtvggktv....lcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCds.lsslpdisftigg 254
                 l++vp+ s          ++++l+++ + +++     l+++++  +lD+GT++ +lp+  v+ i +++ga+++++ g+y++dC++  s++++i f++gg
  CCD26039.2 269 LYTVPMLSsttsyktPVEFDVTLNGIGIIDSSGnkktLTATQFYGLLDSGTTFSYLPSALVAMIGEELGASYDSNIGYYTIDCSAeDSDDTKIVFDMGG 367
                 ******9977776555559999***9885554444449999*******************************************9789999******** PP

                 EEEEEEGGGGEEEESSSTTSEEEESEEECCTSSSEEEEHHHHTTEEEEEETTTTEEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 255 akitvpvselvlkeeeseesqCilglvseeegdlwiLGdvFlrsayvvfdldnnrvglAea 315
                  +i+ ++s++v++ ++   s+Cil +   ++  +++LGd Fl++ay+v+dldn ++ +A+a
  CCD26039.2 368 FHINTTLSDFVIQIST---STCILSI--VPQDGKVVLGDSFLNNAYIVYDLDNYEIAMAQA 423
                 *************997...78*****..5666789************************86 PP

  == domain 2  score: -13.0 bits;  conditional E-value: 6
                 SHCHHTSS-B-GGG-TT-EEEEEEEEEECTTS.EEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx RF
         Asp  36 ssackshstydpskSstykkngkslsisYGdg.svsG 71 
                 ss  +s+s   +s+Ss+ +++++s  i+ +++ + sG
  CCD26039.2 532 SSSIRSSSSSSSSSSSSSSSSSSSTGITSSTNrTNSG 568
                 3334444444455555555556666666666655555 PP

>> TAXi_N  Xylanase inhibitor N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   6.2   1.9e-14   5.5e-11       1     177 [.      78     258 ..      78     259 .. 0.69
   2 ?   -3.8   9.6       4.2   1.3e+04      50      82 ..     507     547 ..     447     574 .. 0.37

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.9e-14
      TAXi_N   1 YlvsisiGtppqplklvvDtGsdltWvqCkpckacssqkkpvfdpsksstykavpcssslCkac.easssaksgsssstceyeisygadgssssGvlat 98 
                 Y v++++Gtp q+l++++DtGs+ +Wv+       s+++    + ++ s y   + ++  C++  +  ss++s+ +s+  ++ isyg dgs+++G+ +t
  CCD26039.2  78 YSVEVEMGTPSQKLTVLLDTGSSDFWVTS------SDNPYCGTTSTEGSLYGGETQDTIDCSTYgTFDSSKSSTFQSNDTDFLISYG-DGSFAEGTWGT 169
                 99***************************......22222223333333444444445555533344667778889999*******8.*********** PP

      TAXi_N  99 dtltlsstdgksvkvpnlvfGCgksnlgglaagadGilGLGrgk...................lSlvsqlaskg.slgnkFsyCLssssssssgvlffG 177
                 d+++l    ++s +++++ ++ ++     + +++ G+lG G  +                     ++  l+++g + + + s++L +++ss+sg+++fG
  CCD26039.2 170 DVIKL----DDSLSLNDVSVAVAS-----STNSSMGVLGIGLRPlettysstksvnektsymyDNFPISLKKSGlIESTAYSLYL-NDPSSKSGNILFG 258
                 *****....577999999999988.....33446799999999966666566555555555555555555555533344455555.6666666666666 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 4.2
      TAXi_N  50 tykavpcssslCk........aceasssaksgsssstceye 82 
                 +++++++ss+  +        + ++sss +s+ssss+ + +
  CCD26039.2 507 STSTLRSSSRSSSfvssnnraTASTSSSIRSSSSSSSSSSS 547
                 11111111111111111111000111111111111111111 PP

>> GcnA_N  N-acetyl-beta-D-glucosaminidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0         1   3.1e+03      23      54 ..      43      75 ..      38      80 .. 0.76
   2 ?   11.1   0.0    0.0001       0.3      15      41 ..     173     199 ..     168     209 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
      GcnA_N 23 gdveievaqsdqasir.ikGeeGdyqltyrkPh 54
                gd  ++ ++s++ s + ik ++G  q+t  +  
  CCD26039.2 43 GDSFLNSSSSNGPSAQlIKRDDGYEQVTLTNQQ 75
                666677889999888757899999999876655 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0001
      GcnA_N  15 lLekqlsLgdveievaqsdqasirikG 41 
                  L+  lsL dv ++va+s ++s+ + G
  CCD26039.2 173 KLDDSLSLNDVSVAVASSTNSSMGVLG 199
                 68999*****************99877 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.4    0.0042        13       8      37 ..      89     118 ..      79     202 .. 0.71
   2 ?    2.1   0.0       0.1     3e+02      13      33 ..     314     334 ..     302     346 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0042
  Asp_protease_2   8 kpvrfllDTGasttlispelaeklglkvre 37 
                     +++++llDTG+s   ++++    +g + +e
      CCD26039.2  89 QKLTVLLDTGSSDFWVTSSDNPYCGTTSTE 118
                     7899*********99998876666665555 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.1
  Asp_protease_2  13 llDTGasttlispelaeklgl 33 
                     llD+G + ++++++l++ +g 
      CCD26039.2 314 LLDSGTTFSYLPSALVAMIGE 334
                     89*************987764 PP

>> Lin-8  Ras-mediated vulval-induction antagonist
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.6    0.0013       3.7     160     259 ..     469     562 ..     411     574 .. 0.47

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0013
       Lin-8 160 eeekveveeeaeeqgsmdlketeaeevkeeqmeqsfe.eeeeakleeptvniveeeaaaravdqsfgsaeqqlessssrtssassssssaapsstaakd 257
                  e+  + + ++ +++s++++++    +++++ ++s++ +    + ++  +++v++++ a+a  +s         +sss++ss+ssssss+++sst +++
  CCD26039.2 469 TEVTLSTSATSSPESSASSVTSASTLSSDSSAASSYSrSTSTLRSSSRSSSFVSSNNRATASTSS-------SIRSSSSSSSSSSSSSSSSSSSTGITS 560
                 33444444444444444444444444444444444442222222222233333333333332222.......244444444444444444444444444 PP

       Lin-8 258 fe 259
                 ++
  CCD26039.2 561 ST 562
                 33 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   8.5    0.0014       4.3     222     320 ..     474     568 ..     418     575 .. 0.61

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0014
      DUF572 222 slfasseesaksakkkptkkesskekkkeslekklskltkkkadsslvvrKkkkeeekskeskekteeeskeseeeskkeeetsaee.ekeekakkkss 319
                 s++a+s++++++++ +++++ ss++++++s ++++s+l++++ +ss+v  +++++  +s++s+ +++++s++s+++s+++++ s+++ +++  ++ ++s
  CCD26039.2 474 STSATSSPESSASSVTSASTLSSDSSAASSYSRSTSTLRSSSRSSSFVSSNNRAT--ASTSSSIRSSSSSSSSSSSSSSSSS-SSTGiTSS--TNRTNS 567
                 3333333333333334445578899999999999999988888888888888877..3444444444444444443333323.33332322..334444 PP

      DUF572 320 s 320
                 +
  CCD26039.2 568 G 568
                 4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1361  (0.0759105); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.92u 0.34s 00:00:01.26 Elapsed: 00:00:00.49
# Mc/sec: 3630.38
//
Query:       CCD26040.2  [L=661]
Description: hypothetical protein NDAI_0G02630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-09   37.7   4.8    6.5e-08   32.8   0.9    2.3  2  zf-RING_2     Ring finger domain
    1.5e-06   28.4   1.4    3.5e-06   27.2   0.3    2.1  2  zf-rbx1       RING-H2 zinc finger domain
    3.3e-06   26.9   2.0    7.9e-06   25.6   2.0    1.5  1  Prok-RING_4   Prokaryotic RING finger family 4
    5.1e-05   23.2   5.2    0.00051   20.0   0.2    2.5  2  zf-RING_UBOX  RING-type zinc-finger
    7.3e-05   22.8   1.8    7.3e-05   22.8   1.8    1.7  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
    7.7e-05   22.5   1.0    7.7e-05   22.5   1.0    2.1  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    0.00018   21.3   3.6    0.00024   20.9   1.0    2.0  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    0.00047   20.1   2.2       0.01   15.8   0.3    2.3  2  zf-RING_5     zinc-RING finger domain
     0.0015   18.4   3.7     0.0028   17.5   0.7    2.3  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
      0.022   14.9   0.4      0.045   13.9   0.4    1.5  1  zf-RING_10    zinc RING finger of MSL2
      0.034   14.2   0.5      0.071   13.2   0.5    1.5  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
       0.19   11.5   2.5        7.7    6.4   0.2    2.4  2  zf-RING_11    RING-like zinc finger


Domain annotation for each model (and alignments):
>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.2    0.0079        12       2      15 ..     156     169 ..     155     174 .. 0.80
   2 !   32.8   0.9   4.3e-11   6.5e-08      15      44 .]     240     269 ..     229     269 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0079
   zf-RING_2   2 eCpICleelssads 15 
                 eC+IC+e++ ++ +
  CCD26040.2 156 ECSICYEPYVDEPD 169
                 9*******977655 PP

  == domain 2  score: 32.8 bits;  conditional E-value: 4.3e-11
   zf-RING_2  15 svlllpCgHvfhreClerwlrssstCPlCr 44 
                 s+++lpC H+f+reCl +w + +++CPlCr
  CCD26040.2 240 SPVKLPCDHIFGRECLYKWSKLENSCPLCR 269
                 456889***********************9 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.1   3.2e+03       2      12 ..     156     166 ..     155     177 .. 0.79
   2 !   27.2   0.3   2.3e-09   3.5e-06      25      55 .]     240     269 ..     217     269 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.1
     zf-rbx1   2 tCaiCrnelee 12 
                 +C+iC +++ +
  CCD26040.2 156 ECSICYEPYVD 166
                 7****998765 PP

  == domain 2  score: 27.2 bits;  conditional E-value: 2.3e-09
     zf-rbx1  25 cpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                  pv+l  C H F  +C+ kW k +++CPlcr
  CCD26040.2 240 SPVKL-PCDHIFGRECLYKWSKLENSCPLCR 269
                 55555.9***********************8 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   2.0   5.3e-09   7.9e-06      14      43 ..     244     275 ..     238     277 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 5.3e-09
  Prok-RING_4  14 epCgHlvCkeCfdsk.dls.sCPlCqrrisks 43 
                   pC H++ +eC+ ++ +l+ sCPlC+++i +s
   CCD26040.2 244 LPCDHIFGRECLYKWsKLEnSCPLCRHKIIES 275
                  6************9964446*******99765 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.8     0.021        32       1      10 [.     157     167 ..     157     173 .. 0.80
   2 !   20.0   0.2   3.4e-07   0.00051      10      39 .]     240     266 ..     230     266 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.021
  zf-RING_UBOX   1 CpIClelft.d 10 
                   C+IC+e++  +
    CCD26040.2 157 CSICYEPYVdE 167
                   *******9752 PP

  == domain 2  score: 20.0 bits;  conditional E-value: 3.4e-07
  zf-RING_UBOX  10 dPlv.lpCGHtFCreClwelskslegafkCP 39 
                    P v lpC H+F reCl    k+++ + +CP
    CCD26040.2 240 SP-VkLPCDHIFGRECL---YKWSKLENSCP 266
                   68.448***********...78888888888 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   1.8   4.9e-08   7.3e-05       7      42 .]     237     268 ..     236     268 .. 0.94

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 4.9e-08
  zf-C3HC4_4   7 YLekPvsleCGhsfClsCisslqkepdgeqllCplC 42 
                 YL+ Pv l+C+h+f  +C+++++k ++    +CplC
  CCD26040.2 237 YLHSPVKLPCDHIFGRECLYKWSKLEN----SCPLC 268
                 9**********************9984....59999 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.62   9.2e+02       1       9 [.     156     164 ..     156     168 .. 0.78
   2 !   22.5   1.0   5.2e-08   7.7e-05      12      40 .]     241     268 ..     231     268 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.62
  zf-C3HC4_2   1 kCpiCldml 9  
                 +C iC++ +
  CCD26040.2 156 ECSICYEPY 164
                 699**9865 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 5.2e-08
  zf-C3HC4_2  12 psvvtpCgHvfCqkCilrsLeekneCPlC 40 
                 p v  pC H f ++C+ ++ + +n+CPlC
  CCD26040.2 241 P-VKLPCDHIFGRECLYKWSKLENSCPLC 268
                 4.445**************9********* PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1      0.45   6.8e+02       3      10 ..     155     162 ..     152     167 .. 0.72
   2 !   20.9   1.0   1.6e-07   0.00024      15      48 ..     241     273 ..     237     275 .. 0.91

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.45
                 SB-TTTSS CS
  zf-C3HC4_3   3 eeCviCle 10 
                 +eC+iC+e
  CCD26040.2 155 TECSICYE 162
                 46888876 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 1.6e-07
                 EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B-- CS
  zf-C3HC4_3  15 vvllpCgHlvlCeeCaekllkrkkkCpiCrrpie 48 
                  v lpC H+ +  eC+ k+ k +++Cp+Cr +i 
  CCD26040.2 241 PVKLPCDHI-FGRECLYKWSKLENSCPLCRHKII 273
                 5679*****.*********************996 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.043        64       1      10 [.     156     167 ..     156     178 .. 0.74
   2 !   15.8   0.3   6.7e-06      0.01      16      44 .]     242     270 ..     229     270 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.043
   zf-RING_5   1 hCnkCfekl..s 10 
                 +C++C+e++  +
  CCD26040.2 156 ECSICYEPYvdE 167
                 6********541 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 6.7e-06
   zf-RING_5  16 yltsCgHifCekClkkllekeavCpiCrk 44 
                 + ++C Hif  +Cl k ++ e+ Cp+Cr+
  CCD26040.2 242 VKLPCDHIFGRECLYKWSKLENSCPLCRH 270
                 5689***********************95 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1      0.25   3.8e+02       1      11 [.     157     167 ..     157     173 .. 0.84
   2 !   17.5   0.7   1.9e-06    0.0028      13      41 .]     242     268 ..     229     268 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.25
                 -TTT-S--SS- CS
    zf-C3HC4   1 CpiCleeakep 11 
                 C+iC e ++++
  CCD26040.2 157 CSICYEPYVDE 167
                 99**9999876 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 1.9e-06
                 .E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  13 elleCkHsfCskCirkilksrkkvkCPlC 41 
                   l+C+H f ++C+ k+ k   +++CPlC
  CCD26040.2 242 VKLPCDHIFGRECLYKWSK--LENSCPLC 268
                 379****************..7788**** PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.4     3e-05     0.045      14      44 ..     239     269 ..     233     282 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 3e-05
  zf-RING_10  14 lepkekeCqHyvCrlCvgkkkklkpsCsqCk 44 
                 ++p +  C+H   r C+ k  kl+ sC+ C+
  CCD26040.2 239 HSPVKLPCDHIFGRECLYKWSKLENSCPLCR 269
                 5789999***********************8 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.5   4.7e-05     0.071      52      81 ..     246     272 ..     239     276 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 4.7e-05
                 TS-EEEHHHHHHHHHHHSTSSB-TTTSSB- CS
  zf-ANAPC11  52 ckhnfhlhcilkwletetskglcpmcrqtf 81 
                 c+h+f   c++kw + e+    cp+cr ++
  CCD26040.2 246 CDHIFGRECLYKWSKLEN---SCPLCRHKI 272
                 *************87765...5****9875 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.2     0.016        25       1      10 [.     156     165 ..     156     169 .. 0.84
   2 ?    6.4   0.2    0.0052       7.7      17      28 ..     243     254 ..     234     255 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.016
  zf-RING_11   1 eCsICLeefk 10 
                 eCsIC e++ 
  CCD26040.2 156 ECSICYEPYV 165
                 9****99875 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0052
  zf-RING_11  17 ilpCsHtFHfkC 28 
                  lpC H+F  +C
  CCD26040.2 243 KLPCDHIFGREC 254
                 68******9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1628  (0.0908026); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.98u 0.37s 00:00:01.35 Elapsed: 00:00:00.51
# Mc/sec: 3921.43
//
Query:       CCD26041.2  [L=220]
Description: hypothetical protein NDAI_0G02640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-19   69.5  12.7    5.5e-19   68.7  12.7    1.4  1  Mod_r         Modifier of rudimentary (Mod(r)) protein
  ------ inclusion threshold ------
      0.013   15.2   0.3      0.025   14.2   0.3    1.5  1  RPW8          Arabidopsis broad-spectrum mildew resistance pr
       0.12   12.2   5.2      0.091   12.6   1.8    2.3  2  Tma16         Translation machinery-associated protein 16
       0.39   10.5   4.2      0.097   12.4   0.7    1.8  2  DivIC         Septum formation initiator
          2    9.1   8.3       0.31   11.7   1.6    2.4  2  YabA          Initiation control protein YabA


Domain annotation for each model (and alignments):
>> Mod_r  Modifier of rudimentary (Mod(r)) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7  12.7   1.5e-22   5.5e-19       2     146 .]      57     209 ..      56     209 .. 0.87

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 1.5e-22
       Mod_r   2 klSkeeLqellede.eklealvktlpevkqlkeekeellaeneslaeknlslepeleelrselqekleelkelekefeekeqeldell.qkfspdalla 98 
                  l++ eL  ll+++ +kl+++v++ +    l++  +++ ++ ++ +++  ++ +el+ +r++++++le +k +e+ + +k+q+ ++l+ +k+s+dal++
  CCD26041.2  57 LLTNRELLGLLTEHaDKLSEYVTKFHP---LNDTISDI-QTLKQRLRDLHERFDELQLKRDDIKKELEDYKVVESMYVKKWQDFHHLIqEKYSDDALRR 151
                 6999**********9*******76655...44444444.333444454455667**********************************99********* PP

       Mod_r  99 rLqtavaeaeeeSealaeefle..........geieldeFvkefkekRklyHlrkeKl 146
                 +++  +++ ++e+ +l+ ++++          + ++l+ Fvke++ekR+++Hl +eKl
  CCD26041.2 152 NVEMYLKRLDNECTNLEVSMYDtqgqdgmkniDMNQLNLFVKEYLEKRQKFHLNQEKL 209
                 *********************88******8887788899*****************96 PP

>> RPW8  Arabidopsis broad-spectrum mildew resistance protein RPW8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.3   7.1e-06     0.025      14      77 ..      61     124 ..      58     146 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 7.1e-06
        RPW8  14 gellkaileakkksldfksilkrLestleritPvvkeieklnkeldrpreeieeLkklLekaek 77 
                 +ell +++e ++k ++   +++ L++t+++i+++ +++  l++++d+ + + +++kk+Le+ + 
  CCD26041.2  61 RELLGLLTEHADKLSEYVTKFHPLNDTISDIQTLKQRLRDLHERFDELQLKRDDIKKELEDYKV 124
                 578889999999***********************************************98654 PP

>> Tma16  Translation machinery-associated protein 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   1.8   2.5e-05     0.091      19      81 ..     109     168 ..      90     179 .. 0.87
   2 ?   -0.0   0.1       0.2   7.3e+02      54      81 ..     180     208 ..     169     216 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.5e-05
       Tma16  19 alRdeklakkkkerakkkssllervkffqealdeekkplsleelkeliekylkRndeeleelk 81 
                 +l+ + ++k+ ++ +  +s ++++++ f++ ++e   ++s++ l++ +e ylkR d+e  +l+
  CCD26041.2 109 QLKRDDIKKELEDYKVVESMYVKKWQDFHHLIQE---KYSDDALRRNVEMYLKRLDNECTNLE 168
                 67777788888888888999*************9...7********************99887 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.2
       Tma16  54 kkplsleelkeliekylk.Rndeeleelk 81 
                  k+++ ++l+ ++++yl+ R++  l+++k
  CCD26041.2 180 MKNIDMNQLNLFVKEYLEkRQKFHLNQEK 208
                 56778888999999999724444555555 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.7   2.7e-05     0.097      15      51 ..      87     123 ..      83     132 .. 0.88
   2 ?   -3.1   0.2       1.9   6.7e+03      19      33 ..     195     209 ..     192     215 .. 0.53

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.7e-05
                 XXXHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-X CS
       DivIC  15 gllaykqlkqeiaalqaelaklkaeneeLeaevkdLk 51 
                 ++++++ lkq + +l +  ++l+ ++++ ++e++d+k
  CCD26041.2  87 TISDIQTLKQRLRDLHERFDELQLKRDDIKKELEDYK 123
                 6899*******************************96 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.9
                 HHHHHHHHHHHHHHH CS
       DivIC  19 ykqlkqeiaalqael 33 
                 y +++q+ +  q++l
  CCD26041.2 195 YLEKRQKFHLNQEKL 209
                 444555555555544 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.6   8.6e-05      0.31      16      68 ..      83     135 ..      68     166 .. 0.75
   2 ?    0.4   1.5      0.29   1.1e+03      21      49 ..     182     210 ..     151     217 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHXXXXXXXXXXXXXXXX CS
        YabA  16 qleelleeleelkeelaelleenaeLeleneklrerleeeekkekekkkelse 68 
                  l+++ +++++lk++l +l e+ +eL+l  + ++++le+ +  e+   k+ ++
  CCD26041.2  83 PLNDTISDIQTLKQRLRDLHERFDELQLKRDDIKKELEDYKVVESMYVKKWQD 135
                 46788999*****************************6555554444444444 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.29
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        YabA  21 leeleelkeelaelleenaeLeleneklr 49 
                 + ++++l+  ++e le+ ++++l++ekl 
  CCD26041.2 182 NIDMNQLNLFVKEYLEKRQKFHLNQEKLN 210
                 34577888888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1450  (0.0808746); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 1568.39
//
Query:       CCD26042.2  [L=226]
Description: hypothetical protein NDAI_0G02650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-54  185.5   0.0    1.2e-54  185.4   0.0    1.0  1  Abhydrolase_2  Phospholipase/Carboxylesterase
    6.1e-08   32.6   0.0    1.1e-07   31.7   0.0    1.4  1  FSH1           Serine hydrolase (FSH1)
    0.00011   21.6   0.0        2.4    7.4   0.0    3.1  3  Hydrolase_4    Serine aminopeptidase, S33
    0.00019   22.1   0.0    0.00021   22.0   0.0    1.2  1  Abhydrolase_6  Alpha/beta hydrolase family
    0.00037   20.2   0.1     0.0012   18.5   0.1    1.9  1  Abhydrolase_1  alpha/beta hydrolase fold
     0.0057   16.2   0.0     0.0082   15.7   0.0    1.2  1  DLH            Dienelactone hydrolase family


Domain annotation for each model (and alignments):
>> Abhydrolase_2  Phospholipase/Carboxylesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.4   0.0   4.1e-58   1.2e-54       2     215 ..       3     222 ..       2     224 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.4 bits;  conditional E-value: 4.1e-58
                    EEEEEE--SS---EEEEEE--TT--SHHHHHHHH....TT--TTEEEEEE---EEE-GGGTT-EEE-SS-B--SSTTS.-B-HHHHHHHHHHHHHH CS
  Abhydrolase_2   2 eiaevvspkdkaqavviflHGlGdsghawaeaak...teaalpnikfifphgpelpvtlnggmrmpaWfdlvglspek.kedeagikksaekleel 93 
                    +i +++ + +++++ +i lHGlGd++++w + a+      ++ +++fi p++p++pv++ng++ mpaWf++ +++  + + d +gi++s+  +  +
     CCD26042.2   3 NILRIAPKLQPVKQSIIVLHGLGDTADGWRFLAQeltSDKRFHHTQFILPNAPNIPVYANGNATMPAWFNIHEWNLTSkNVDVDGIMQSVDLVTRI 98 
                    6789999*********************988766111356799*******************************9888799*************** PP

                    HHHHHHTT--GGGEEEEEETHHHHHHHHHHHT-SS--SEEEEES---TTGGGTTTTS-GGGGG-EEEEEEETT-SSS-HHHHHHHHHHHHTTS-.. CS
  Abhydrolase_2  94 idaelkkgipssriiigGFSqGaalalylaltlpkklggivafsgalplsqklessatavtkklpilqiHgeeDpvvplalgkaakevlkkllk.. 187
                    +++e+++g++ ++i+igGFSqGaa++l+++  lp k+g  + fsg++ ++qkl     +++ ++p++++Hg  D+vvp   g++a  ++k+ lk  
     CCD26042.2  99 VKEEIDNGVKPEDIAIGGFSQGAAISLASVALLPYKIGAFFVFSGFCQIEQKLIHDGRELNLETPVFHGHGGLDNVVPEYCGELARGLFKDKLKyk 194
                    *********************************************************************************************999 PP

                    GEEEEEETT--SS--HHHHHHHHHHHHH CS
  Abhydrolase_2 188 kvelksyeglaHsideeemqdikeflkk 215
                    +++ ++y+++ Hs ++ee+ d +ef+ k
     CCD26042.2 195 NYNYHTYRSMEHSVCPEELVDFREFIVK 222
                    *************************976 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   3.7e-11   1.1e-07       4     177 ..      15     177 ..      12     200 .. 0.74

  Alignments for each domain:
  == domain 1  score: 31.7 bits;  conditional E-value: 3.7e-11
        FSH1   4 kkkiLcLhGytqsgeiFraktsalrkllkklnvelvyldaplelaekadlpkseseeeekseeeeesraWfrkkdekneyegleesldavkdyike... 99 
                 k+ i++LhG + +++ +r   ++l    + +  +++ ++ap      a+ ++       ++    +   W  +++ + +++g+ +s+d v++++ke   
  CCD26042.2  15 KQSIIVLHGLGDTADGWRFLAQELTSDKRFHHTQFILPNAPNIP-VYANGNA-------TMPAWFNIHEWNLTSK-NVDVDGIMQSVDLVTRIVKEeid 104
                 56788899998888877666666665555567888888888766.2222222.......3666667777777776.99******************666 PP

        FSH1 100 ...ngp.fdGiiGFSqGaalaallaslleellkeashpslkfailvsGfkleepkyeeyyeedkiqtptLhvlGelDtvvde 177
                    + p    i GFSqGaa++ + ++ll  +           + ++sGf   e+k  +   e +++tp++h +G lD+vv+e
  CCD26042.2 105 ngvK-PeDIAIGGFSQGAAISLASVALLPYKIG--------AFFVFSGFCQIEQKLIHDGRELNLETPVFHGHGGLDNVVPE 177
                 5532.33568899********999999986544........566789998877764443468899***************96 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0057        17       2      29 ..      13      40 ..      12      43 .. 0.89
   2 !    7.4   0.0   0.00079       2.4      54     117 ..      87     151 ..      79     159 .. 0.76
   3 !    6.2   0.0    0.0018       5.5     189     237 ..     159     211 ..     154     212 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0057
  Hydrolase_4  2 epkavvvlvHGlaehsgryaelaeaLaa 29
                 ++k+ ++++HGl+++++    la++L+ 
   CCD26042.2 13 PVKQSIIVLHGLGDTADGWRFLAQELTS 40
                 68999*************9999999975 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.00079
  Hydrolase_4  54 sfddyvdDlaafv.ekvkeehpelplfllGhSmGGliallyllrypdkvaglilsaPalkikakl 117
                   + + vd +  +v e++ +  + + + + G S G++i+l+ ++  p k+ ++ +++ +++i++kl
   CCD26042.2  87 GIMQSVDLVTRIVkEEIDNGVKPEDIAIGGFSQGAAISLASVALLPYKIGAFFVFSGFCQIEQKL 151
                  55555554444442444555555699**********************************99875 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0018
  Hydrolase_4 189 kitlPllllhGeaDkvvdpeas....relyerlgskdktlklypglyHellnE 237
                  ++++P++  hG+ D+vv++         + ++l+ k+ ++++y  + H++  E
   CCD26042.2 159 NLETPVFHGHGGLDNVVPEYCGelarGLFKDKLKYKNYNYHTYRSMEHSVCPE 211
                  5789*************9877667756777899999************98755 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   7.1e-08   0.00021       1      86 [.      18     131 ..      18     209 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 7.1e-08
                    EEEE--GC.....GCHHHHHHHHCCT.......CEEEEE--TTS.....T....S-GGCS--HHH......CHHH...HHHHCCTT.........T CS
  Abhydrolase_6   1 vlllHGagssassWlvapLaallaag.......vhvlapDlpGh.....G....rsdpppldled......ladl...aalldelaa.......gg 64 
                    +++lHG+g +a++W+  +La  l+++       +  + p +p+      G    +++   ++++       ++ +   ++l++++++        +
     CCD26042.2  18 IIVLHGLGDTADGWR--FLAQELTSDkrfhhtqF--ILPNAPNIpvyanGnatmPAWFNIHEWNLtsknvdVDGImqsVDLVTRIVKeeidngvKP 109
                    789***********7..66555566666555454..778888553334463333334444666554444322222555556666655666689999 PP

                    TSEEEEEETCHHHHHHHHHHCC CS
  Abhydrolase_6  65 gpvvlvGHSlGGalalaaapla 86 
                     ++ + G S+G+a++la ++l+
     CCD26042.2 110 EDIAIGGFSQGAAISLASVALL 131
                    999**********999955544 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1     4e-07    0.0012       2     102 ..      17     139 ..      16     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 4e-07
                    EEEEE-STTTCGGGGTTGHHHHHHHHT....TSEEEEEEETTSTTSSSTTTGB......CHH..............SHHHHHHHHH.HHHHHCTTS CS
  Abhydrolase_1   2 vlvilhGlpgssdvwaerglapaLakd....gfdvillDlrGvgySspapacin.....ddy..............gtasvaddld.rildalgdd 73 
                    ++++lhGl++++d w+   la+ L  d    + ++il++ ++ +    + a+ +     +++              + + v ++++  i +  + +
     CCD26042.2  17 SIIVLHGLGDTADGWRF--LAQELTSDkrfhHTQFILPNAPNIPVYANGNATMPawfniHEWnltsknvdvdgimqSVDLVTRIVKeEIDNGVKPE 110
                    79***************..*********9999999999999987766666665566667333666666666777765555888888999******* PP

                    SEEEEEETHHHHHHHHHHHHHGGGEEEEE CS
  Abhydrolase_1  74 kltlvGhSmGGmialayaaeyperVkalv 102
                     +++ G+S+G +i+la  a+ p ++ a+ 
     CCD26042.2 111 DIAIGGFSQGAAISLASVALLPYKIGAFF 139
                    *****************999999988875 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.7e-06    0.0082      89     188 ..     101     207 ..      72     215 .. 0.70

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.7e-06
         DLH  89 lksvpevstkkvgvvGfCmGGalalllaaev.pevdaavafYG.lspekele...eaakikapilalfgeeDefipadevekleealkaan...vdlel 179
                  + ++ v+++ +++ Gf  G+a++l++ a    ++ a  +f G  + e++l+   +  ++++p++  +g+ D+++p     +l+  l + +   ++++ 
  CCD26042.2 101 EEIDNGVKPEDIAIGGFSQGAAISLASVALLpYKIGAFFVFSGfCQIEQKLIhdgRELNLETPVFHGHGGLDNVVPEYC-GELARGLFKDKlkyKNYNY 198
                 344567999****************999999568999999*9*745555554111456899***************984.4444444333311145556 PP

         DLH 180 kvYpgagHa 188
                 + Y    H+
  CCD26042.2 199 HTYRSMEHS 207
                 666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       367  (0.0204696); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.48u 0.29s 00:00:00.77 Elapsed: 00:00:00.46
# Mc/sec: 1465.27
//
Query:       CCD26043.2  [L=707]
Description: hypothetical protein NDAI_0G02660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-16   57.9   0.6      0.016   16.0   0.0    8.6 10  TPR_14       Tetratricopeptide repeat
      2e-09   37.2  31.9    0.00027   20.8   0.5    8.2 10  HAT          HAT (Half-A-TPR) repeat
    2.8e-08   34.2   0.0       0.39   11.2   0.0    4.9  4  TPR_19       Tetratricopeptide repeat
    2.9e-06   27.0  10.4       0.53   10.5   0.0    5.9  6  TPR_2        Tetratricopeptide repeat
     0.0047   16.7   5.7        7.7    6.5   0.1    4.8  4  TPR_1        Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.034   14.5   4.3        1.1    9.8   0.0    5.0  6  TPR_17       Tetratricopeptide repeat
       0.04   14.0   7.0        7.8    6.8   0.3    4.0  3  TPR_7        Tetratricopeptide repeat
      0.045   14.4   0.1         20    5.9   0.0    3.3  3  TPR_16       Tetratricopeptide repeat
      0.069   12.3   0.1      0.069   12.3   0.1    6.7  7  NRDE-2       NRDE-2, necessary for RNA interference
      0.078   13.6   2.2         46    5.0   0.1    4.9  4  TPR_6        Tetratricopeptide repeat
       0.12   12.7  12.6        4.8    7.7   0.6    5.4  5  TPR_8        Tetratricopeptide repeat
       0.21   11.7  21.5      0.047   13.8   1.4    5.7  6  U3_assoc_6   U3 small nucleolar RNA-associated protein 6
       0.27   12.0   2.7       0.31   11.8   0.4    2.3  2  DIOX_N       non-haem dioxygenase in morphine synthesis N-ter
        2.2    8.9   4.7        7.9    7.1   0.1    3.7  3  Arc_PepC_II  Archaeal Peptidase A24 C-terminus Type II


Domain annotation for each model (and alignments):
>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00035      0.45       4      41 ..      72     109 ..      69     111 .. 0.89
   2 ?    2.7   0.0      0.22   2.9e+02      20      42 ..     122     144 ..     116     146 .. 0.89
   3 ?    6.3   0.0     0.016        21       2      34 ..     138     170 ..     137     174 .. 0.91
   4 ?    2.1   0.0      0.36   4.7e+02       2      41 ..     171     209 ..     170     212 .. 0.84
   5 ?   -1.5   0.0         5   6.4e+03      16      38 ..     266     288 ..     260     293 .. 0.80
   6 ?   -1.5   0.0         5   6.5e+03      23      42 ..     315     334 ..     313     336 .. 0.77
   7 !   16.0   0.0   1.2e-05     0.016       3      43 ..     450     490 ..     448     491 .. 0.91
   8 ?    2.6   0.0      0.25   3.2e+02       3      32 ..     484     513 ..     482     516 .. 0.86
   9 !    8.9   0.0    0.0024       3.1      10      39 ..     536     565 ..     529     569 .. 0.88
  10 ?   -2.2   0.0       8.8   1.1e+04      20      35 ..     613     628 ..     610     635 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00035
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 + ++++++ ++ d+++A+ +++ral  + +   +w+++
  CCD26043.2  72 WIRYGQFEIEQHDWKRARSVYERALLVDSSYIPLWIRY 109
                 899**********************9998888888887 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.22
      TPR_14  20 AiallrralalaPddaeawllla 42 
                 A++ll+ra+   P  + +w+ + 
  CCD26043.2 122 ARNLLNRAITILPRVDKLWYKYL 144
                 99**************9998775 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.016
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPdd 34 
                 +++++++ +++ l+++d  +al+r+++ l P++
  CCD26043.2 138 KLWYKYLFVEESLQNWDIVRALFRKWCLLEPKS 170
                 58************************9999985 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.36
      TPR_14   2 eallalaeallalGdpdeAiallrralalaPddaeawlll 41 
                 +a+    +++ ++++++  ++++ +++  +P+  ++wl++
  CCD26043.2 171 NAWDSFIQFEIRQENWENVRDVFSQYVLVHPQ-IDTWLQW 209
                 578888999*****************999998.5666665 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 5
      TPR_14  16 dpdeAiallrralalaPddaeaw 38 
                 ++++ +al++  l+++P++  ++
  CCD26043.2 266 ELERVRALYNISLDKWPEEKKLQ 288
                 57788999999999999986665 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 5
      TPR_14  23 llrralalaPddaeawllla 42 
                  ++ +l ++P+d ++w l+ 
  CCD26043.2 315 EYETYLLKNPQDYDTWWLYF 334
                 68899999**9988886665 PP

  == domain 7  score: 16.0 bits;  conditional E-value: 1.2e-05
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 + +++ e++++l ++d+ ++l++++l+ +P+++ +w+ + +
  CCD26043.2 450 LFMKYIEIEMNLKEFDRVRKLYEKYLQFNPGNLNTWISYIE 490
                 578999*****************************998776 PP

  == domain 8  score: 2.6 bits;  conditional E-value: 0.25
      TPR_14   3 allalaeallalGdpdeAiallrralalaP 32 
                  +  + e+++ lGd ++ +al++ +l+ + 
  CCD26043.2 484 TWISYIELEASLGDDERVRALYNIILEEDN 513
                 68889999***************9999765 PP

  == domain 9  score: 8.9 bits;  conditional E-value: 0.0024
      TPR_14  10 allalGdpdeAiallrralalaPddaeawl 39 
                 ++ + +++d A++l++++l+l   ++e+w+
  CCD26043.2 536 FETEEQEYDNARELYEKYLKLSDYSPEIWI 565
                 5667899********************996 PP

  == domain 10  score: -2.2 bits;  conditional E-value: 8.8
      TPR_14  20 AiallrralalaPdda 35 
                 A+ ++++a++ + ++ 
  CCD26043.2 613 ARSVFEKAIEFYKTQH 628
                 7788888888776665 PP

>> HAT  HAT (Half-A-TPR) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.04        51      22      30 ..      71      79 ..      55      81 .. 0.88
   2 !   13.8   0.3   3.4e-05     0.044       3      26 ..      85     109 ..      83     113 .. 0.89
   3 ?   -1.1   0.2       1.5   1.9e+03       3      31 ..     119     148 ..     117     153 .. 0.63
   4 !   20.8   0.5   2.1e-07   0.00027       6      30 ..     189     213 ..     184     214 .. 0.93
   5 ?   -3.2   0.1         7     9e+03       2      10 ..     266     274 ..     266     275 .. 0.87
   6 ?   -3.3   0.2       7.4   9.4e+03      23      29 ..     378     384 ..     377     386 .. 0.78
   7 ?   -2.0   0.2       2.9   3.7e+03      23      30 ..     418     425 ..     416     427 .. 0.88
   8 !   10.5   0.0   0.00036      0.47       1      28 [.     462     490 ..     462     494 .. 0.87
   9 !    6.8   0.0    0.0051       6.6       2      27 ..     542     568 ..     541     573 .. 0.78
  10 ?   -2.1   0.0       3.2   4.1e+03       4      12 ..     611     619 ..     610     621 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.04
                HHHHHHHHH CS
         HAT 22 NWikyArFE 30
                 Wi+y +FE
  CCD26043.2 71 QWIRYGQFE 79
                7*******9 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHHHHHHS.--HHHHHHH CS
         HAT   3 idRAReiYeRFvvVH.peVkNWiky 26 
                   RAR++YeR + V    +  Wi+y
  CCD26043.2  85 WKRARSVYERALLVDsSYIPLWIRY 109
                 57************98899999999 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHS--H.HHHHHHHHHHH CS
         HAT   3 idRAReiYeRFvvVHpeV.kNWikyArFEE 31 
                 i+ AR+  +R + + p V k W ky   EE
  CCD26043.2 119 INHARNLLNRAITILPRVdKLWYKYLFVEE 148
                 566777777777777777334777755454 PP

  == domain 4  score: 20.8 bits;  conditional E-value: 2.1e-07
                 HHHHHHHHHHHS--HHHHHHHHHHH CS
         HAT   6 AReiYeRFvvVHpeVkNWikyArFE 30 
                  R+++  +v VHp++  W+++ +FE
  CCD26043.2 189 VRDVFSQYVLVHPQIDTWLQWVKFE 213
                 69**********************9 PP

  == domain 5  score: -3.2 bits;  conditional E-value: 7
                 -HHHHHHHH CS
         HAT   2 EidRAReiY 10 
                 E +R R  Y
  CCD26043.2 266 ELERVRALY 274
                 889***999 PP

  == domain 6  score: -3.3 bits;  conditional E-value: 7.4
                 HHHHHHH CS
         HAT  23 WikyArF 29 
                 Wi+y  F
  CCD26043.2 378 WIRYLIF 384
                 ***9655 PP

  == domain 7  score: -2.0 bits;  conditional E-value: 2.9
                 HHHHHHHH CS
         HAT  23 WikyArFE 30 
                 Wi y  FE
  CCD26043.2 418 WILYSEFE 425
                 *******9 PP

  == domain 8  score: 10.5 bits;  conditional E-value: 0.00036
                 --HHHHHHHHHHHHHHS.--HHHHHHHHH CS
         HAT   1 kEidRAReiYeRFvvVH.peVkNWikyAr 28 
                 kE dR R  Ye+++     + + Wi y  
  CCD26043.2 462 KEFDRVRKLYEKYLQFNpGNLNTWISYIE 490
                 8***************9668999*99965 PP

  == domain 9  score: 6.8 bits;  conditional E-value: 0.0051
                 -HHHHHHHHHHHHHHS.--HHHHHHHH CS
         HAT   2 EidRAReiYeRFvvVH.peVkNWikyA 27 
                 E d ARe Ye+++       + Wi +A
  CCD26043.2 542 EYDNARELYEKYLKLSdYSPEIWISFA 568
                 99**********987665556677777 PP

  == domain 10  score: -2.1 bits;  conditional E-value: 3.2
                 HHHHHHHHH CS
         HAT   4 dRAReiYeR 12 
                 + AR+++e+
  CCD26043.2 611 ENARSVFEK 619
                 569***995 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00031      0.39       2      52 ..      80     130 ..      79     140 .. 0.94
   2 ?    1.5   0.0      0.33   4.3e+02      26      51 ..     416     441 ..     408     451 .. 0.83
   3 !    8.7   0.0    0.0019       2.5       7      57 ..     464     514 ..     459     517 .. 0.92
   4 ?    5.6   0.0     0.018        23       3      29 ..     539     565 ..     538     571 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00031
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalp 52 
                 +++ d  +A + +e+al  d  +  +++++++  l+++ ++ A++lL+++ 
  CCD26043.2  80 IEQHDWKRARSVYERALLVDSSYIPLWIRYIDNELKNKFINHARNLLNRAI 130
                 6899********************************************986 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.33
      TPR_19  26 earllLAeallalgqldeAealLdal 51 
                  +++l+ e  +  + l+eA+++L + 
  CCD26043.2 416 KIWILYSEFEIRHNGLTEARKILGRS 441
                 6889999999999*********9876 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0019
      TPR_19   7 yaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd 57 
                 +++  +l+e+ lq +p+n++ ++ ++e+  +lg+ +  +al + ++eed +
  CCD26043.2 464 FDRVRKLYEKYLQFNPGNLNTWISYIELEASLGDDERVRALYNIILEEDNK 514
                 677789***************************************999976 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.018
      TPR_19   3 aegdyaeAlalleqalqedpknaearl 29 
                 +e+ y++A +l+e+ l+ +  ++e+++
  CCD26043.2 539 EEQEYDNARELYEKYLKLSDYSPEIWI 565
                 799************999999999987 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00042      0.53       4      31 ..      72      99 ..      71     102 .. 0.90
   2 ?   -0.4   0.0       1.3   1.7e+03      18      32 ..     120     134 ..     113     135 .. 0.81
   3 ?   -2.9   0.0       8.3   1.1e+04      14      25 ..     389     400 ..     387     403 .. 0.81
   4 !    7.6   0.1    0.0036       4.6      11      34 .]     458     481 ..     456     481 .. 0.92
   5 !    6.6   0.7    0.0073       9.3      15      31 ..     541     557 ..     538     559 .. 0.89
   6 ?    3.2   0.1     0.091   1.2e+02      16      32 ..     609     625 ..     609     627 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00042
       TPR_2  4 lynlGlayyklgdyeeAleafekAleld 31
                + + G+  +++ d+++A+  +e+Al  d
  CCD26043.2 72 WIRYGQFEIEQHDWKRARSVYERALLVD 99
                88999999****************9766 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 1.3
       TPR_2  18 eeAleafekAleldP 32 
                 + A++++++A+ + P
  CCD26043.2 120 NHARNLLNRAITILP 134
                 789********9988 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 8.3
       TPR_2  14 lgdyeeAleafe 25 
                  +d e+++ +++
  CCD26043.2 389 TDDIEKCRTYYK 400
                 678999999997 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0036
       TPR_2  11 yyklgdyeeAleafekAleldPnn 34 
                  ++l+++++ ++++ek l+ +P+n
  CCD26043.2 458 EMNLKEFDRVRKLYEKYLQFNPGN 481
                 5899******************87 PP

  == domain 5  score: 6.6 bits;  conditional E-value: 0.0073
       TPR_2  15 gdyeeAleafekAleld 31 
                 ++y+ A+e++ek l+l 
  CCD26043.2 541 QEYDNARELYEKYLKLS 557
                 79************995 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.091
       TPR_2  16 dyeeAleafekAleldP 32 
                 + e A+  fekA+e + 
  CCD26043.2 609 NKENARSVFEKAIEFYK 625
                 568999******99875 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.16   2.1e+02      13      33 ..      81     101 ..      76     102 .. 0.86
   2 !    6.5   0.1     0.006       7.7      12      34 .]     459     481 ..     456     481 .. 0.92
   3 ?    4.9   0.6      0.02        25      15      30 ..     541     556 ..     538     558 .. 0.89
   4 ?    1.5   0.0      0.24   3.1e+02      17      25 ..     617     625 ..     611     626 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.16
                 HTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  13 klgkydeAleyyekALelnPn 33 
                 ++ +++ A   ye+AL ++ +
  CCD26043.2  81 EQHDWKRARSVYERALLVDSS 101
                 5789999999******99976 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.006
                 HHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  12 fklgkydeAleyyekALelnPnn 34 
                 ++l+++d   + yek L+ nP n
  CCD26043.2 459 MNLKEFDRVRKLYEKYLQFNPGN 481
                 789******************87 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.02
                 T-HHHHHHHHHHHHHH CS
       TPR_1  15 gkydeAleyyekALel 30 
                 ++yd A e yek L+l
  CCD26043.2 541 QEYDNARELYEKYLKL 556
                 79**********9998 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.24
                 HHHHHHHHH CS
       TPR_1  17 ydeAleyye 25 
                 +++A+e+y+
  CCD26043.2 617 FEKAIEFYK 625
                 789999997 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       3.3   4.2e+03      16      33 ..      72      89 ..      72      90 .. 0.89
   2 ?   -1.8   0.0       4.4   5.7e+03       2      17 ..      92     107 ..      91     109 .. 0.85
   3 ?    0.3   0.2      0.89   1.1e+03       2      16 ..     316     330 ..     315     340 .. 0.83
   4 ?    9.8   0.0   0.00085       1.1       1      31 [.     470     500 ..     470     503 .. 0.93
   5 ?   -1.1   0.0       2.6   3.4e+03       1      22 [.     549     570 ..     549     585 .. 0.78
   6 ?   -0.7   0.0       1.9   2.5e+03      11      28 ..     611     629 ..     606     633 .. 0.56

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 3.3
      TPR_17 16 ynnLAelllknGdlmtAr 33
                +  ++++  +++d+++Ar
  CCD26043.2 72 WIRYGQFEIEQHDWKRAR 89
                67899999********98 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 4.4
      TPR_17   2 ylkaleldPnnadayn 17 
                 y++al  d ++ +++ 
  CCD26043.2  92 YERALLVDSSYIPLWI 107
                 9*****9999988886 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.89
      TPR_17   2 ylkaleldPnnaday 16 
                 y+  l ++P + d +
  CCD26043.2 316 YETYLLKNPQDYDTW 330
                 9999*******8887 PP

  == domain 4  score: 9.8 bits;  conditional E-value: 0.00085
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmt 31 
                 ly+k l+ +P n + +  + el +++Gd ++
  CCD26043.2 470 LYEKYLQFNPGNLNTWISYIELEASLGDDER 500
                 7**************************9886 PP

  == domain 5  score: -1.1 bits;  conditional E-value: 2.6
      TPR_17   1 lylkaleldPnnadaynnLAel 22 
                 ly+k l+l   +++ +   A +
  CCD26043.2 549 LYEKYLKLSDYSPEIWISFAMY 570
                 7999999998888888877765 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 1.9
      TPR_17  11 nnadaynnLAe.lllknGd 28 
                  na + +++A  +++ ++d
  CCD26043.2 611 ENARSVFEKAIeFYKTQHD 629
                 5555555555545555555 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.012        15      14      28 ..      84      98 ..      80     102 .. 0.79
   2 ?    6.8   0.3    0.0061       7.8      12      35 ..     540     561 ..     538     563 .. 0.78
   3 ?    2.5   0.0      0.14   1.8e+02      15      24 ..     617     626 ..     613     635 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.012
       TPR_7 14 dyeeAielyeqsLal 28
                d+++A ++ye++L +
  CCD26043.2 84 DWKRARSVYERALLV 98
                9**********5544 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0061
       TPR_7  12 lGdyeeAielyeqsLaltkdpeda 35 
                 +++y++A elye+   l  +++ +
  CCD26043.2 540 EQEYDNARELYEK--YLKLSDYSP 561
                 78***********..776666654 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.14
       TPR_7  15 yeeAielyeq 24 
                 +e+Aie+y+ 
  CCD26043.2 617 FEKAIEFYKT 626
                 89******97 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.016        20      20      61 ..      58      96 ..      55     101 .. 0.74
   2 ?   -2.9   0.0       9.1   1.2e+04      19      39 ..     315     332 ..     314     336 .. 0.80
   3 ?    4.5   0.0     0.043        55      12      31 ..     542     561 ..     537     566 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.016
      TPR_16 20 leaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61
                +e++lkr+    ++   +  +g+   +q ++++A+ +y++al
  CCD26043.2 58 FETYLKRN---RLDMGQWIRYGQFEIEQHDWKRARSVYERAL 96
                77788888...7777788888888888888888887777775 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 9.1
      TPR_16  19 aleaalkrdpssPdaaeAlll 39 
                  +e++l ++   P++++ ++l
  CCD26043.2 315 EYETYLLKN---PQDYDTWWL 332
                 59999999*...888887776 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.043
      TPR_16  12 dyddAaaaleaalkrdpssP 31 
                 +yd A++++e +lk+   sP
  CCD26043.2 542 EYDNARELYEKYLKLSDYSP 561
                 57777777777777766666 PP

>> NRDE-2  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.4     0.006       7.7      65     115 ..      37     116 ..      22     138 .. 0.72
   2 ?    1.5   4.4       0.1   1.3e+02      66      66 ..     135     135 ..      53     275 .. 0.52
   3 ?    1.3   2.1      0.12   1.5e+02      86     117 ..     311     342 ..     270     410 .. 0.74
   4 ?   12.3   0.1   5.4e-05     0.069      67     114 ..     447     494 ..     434     510 .. 0.87
   5 ?    0.6   0.1      0.18   2.4e+02     278     316 ..     498     536 ..     494     541 .. 0.87
   6 ?    0.4   3.3      0.21   2.7e+02      69     128 ..     528     587 ..     508     623 .. 0.74
   7 ?    2.2   2.4      0.06        77      18      90 ..     562     655 ..     550     680 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.006
      NRDE-2  65 pdserLllelLklgseiwdse.............................klakeWeellkenpnsvkLWreyldfrqsn 115
                 p+ + L le Lk+ ++   +e                             + ++ +e++l + ++++ LW++y+d +++n
  CCD26043.2  37 PKVDILDLEELKEFQRRKRTEfetylkrnrldmgqwirygqfeieqhdwkRARSVYERALLVDSSYIPLWIRYIDNELKN 116
                 5666677777777777777777777777777777777777776666666578888999999**************99985 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.1
      NRDE-2  66 d 66 
                 +
  CCD26043.2 135 R 135
                 2 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.12
      NRDE-2  86 klakeWeellkenpnsvkLWreyldfrqsnfa 117
                 k ++e+e +l +np++++ W  y d  q nf 
  CCD26043.2 311 KRKREYETYLLKNPQDYDTWWLYFDLLQDNFP 342
                 66778888888888888888888888888764 PP

  == domain 4  score: 12.3 bits;  conditional E-value: 5.4e-05
      NRDE-2  67 serLllelLklgseiwdseklakeWeellkenpnsvkLWreyldfrqs 114
                 +++L ++++++ +++ + ++++k +e++l+ np +++ W+ y++ + s
  CCD26043.2 447 KDKLFMKYIEIEMNLKEFDRVRKLYEKYLQFNPGNLNTWISYIELEAS 494
                 679****************************************98766 PP

  == domain 5  score: 0.6 bits;  conditional E-value: 0.18
      NRDE-2 278 eeeeeDpervvlfsDieplLfklpskelkeqLidafLef 316
                 +e     + ++l +D ++++  + ++e++ q++++f++f
  CCD26043.2 498 DERVRALYNIILEEDNKNFISNFLPNESRLQMMKKFIDF 536
                 44456778999**********999999**********98 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.21
      NRDE-2  69 rLllelLklgseiwdseklakeWeellkenpnsvkLWreyldfrqsnfasfsvekvkely 128
                 +++ + +    e+++ ++ ++ +e++lk ++ s ++W+ +  ++ s+ ++ ++++++e +
  CCD26043.2 528 QMMKKFIDFETEEQEYDNARELYEKYLKLSDYSPEIWISFAMYQNSTPTKEQLQDIRERL 587
                 444455555666677778999999999999999999999999999987777777777654 PP

  == domain 7  score: 2.2 bits;  conditional E-value: 0.06
      NRDE-2  18 daWlelvefQdell..........saeee...................slskserkalaeiklsilekAleknksn..pdserLllelLklgseiwdse 85 
                 + W++++ +Q++            +                       + +k++ +       s++ekA+e  k++   ++  L+le  + ++e++ +e
  CCD26043.2 562 EIWISFAMYQNSTPtkeqlqdireR---LeneeengsdeeqeiefeisEVNKENAR-------SVFEKAIEFYKTQhdTKRRILMLEAFQGYEETYGTE 650
                 7899999999955535555555540...0444545665555455544444444444.......555555554333322678899999999999998888 PP

      NRDE-2  86 klake 90 
                 +++++
  CCD26043.2 651 ETKER 655
                 66554 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       1.1   1.4e+03      13      26 ..      83      95 ..      74      97 .. 0.76
   2 ?    2.5   0.0      0.22   2.8e+02      12      29 ..     388     405 ..     382     406 .. 0.83
   3 ?    5.0   0.1     0.036        46      12      28 ..     540     555 ..     527     557 .. 0.88
   4 ?   -0.7   0.0       2.2   2.9e+03      16      28 ..     610     622 ..     608     625 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 1.1
                HHHHHHHHHHHHHH CS
       TPR_6 13 lgdtdkAlealerl 26
                  d+ +A+  +er 
  CCD26043.2 83 H-DWKRARSVYERA 95
                3.999*******97 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.22
                 HHHHHHHHHHHHHHHHHH CS
       TPR_6  12 klgdtdkAlealerlike 29 
                 +++d +k +++++ li+e
  CCD26043.2 388 ETDDIEKCRTYYKMLINE 405
                 45799***********96 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.036
                 HHHHHHHHHHHHHHHHH CS
       TPR_6  12 klgdtdkAlealerlik 28 
                 ++ ++d+A+e++e+ +k
  CCD26043.2 540 EQ-EYDNARELYEKYLK 555
                 35.9**********987 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHH CS
       TPR_6  16 tdkAlealerlik 28 
                 +++A+  +e+ i+
  CCD26043.2 610 KENARSVFEKAIE 622
                 7899999999997 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.1   1.4e+03      18      32 ..      86     100 ..      72     102 .. 0.75
   2 ?    2.9   0.0      0.13   1.6e+02      12      33 ..     459     480 ..     456     481 .. 0.88
   3 ?    7.7   0.6    0.0037       4.8      15      31 ..     541     557 ..     538     559 .. 0.89
   4 ?    5.8   0.1     0.014        18      16      31 ..     609     624 ..     609     627 .. 0.87
   5 ?   -2.0   0.1       4.6   5.9e+03      18      32 ..     690     704 ..     687     705 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHHHH CS
       TPR_8  18 eeAkeyyekaleldp 32 
                 + A ++ye+al  d 
  CCD26043.2  86 KRARSVYERALLVDS 100
                 6899******98775 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.13
                 HHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8  12 lklgdyeeAkeyyekaleldpd 33 
                 ++l++++   + yek+l+ +p 
  CCD26043.2 459 MNLKEFDRVRKLYEKYLQFNPG 480
                 79999*************9996 PP

  == domain 3  score: 7.7 bits;  conditional E-value: 0.0037
                 T-HHHHHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekaleld 31 
                 ++y++A e yek+l+l+
  CCD26043.2 541 QEYDNARELYEKYLKLS 557
                 68*************97 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.014
                 -HHHHHHHHHHHHHHH CS
       TPR_8  16 dyeeAkeyyekaleld 31 
                 ++e+A +++eka+e  
  CCD26043.2 609 NKENARSVFEKAIEFY 624
                 689**********976 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 4.6
                 HHHHHHHHHHHHHHH CS
       TPR_8  18 eeAkeyyekaleldp 32 
                 ++A +++e a ++++
  CCD26043.2 690 KNASKFLELAKKWSE 704
                 789999999999875 PP

>> U3_assoc_6  U3 small nucleolar RNA-associated protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.4   3.6e-05     0.047      14      58 ..      39      84 ..      32      94 .. 0.84
   2 ?   -2.8   0.0       5.5   7.1e+03      25      41 ..     309     325 ..     302     334 .. 0.65
   3 ?   -2.0   0.2       3.1   3.9e+03      16      43 ..     383     410 ..     379     437 .. 0.73
   4 ?    7.5   0.4    0.0032       4.1      43      66 ..     448     471 ..     440     481 .. 0.80
   5 ?    3.3   0.1     0.069        88      29      58 ..     468     497 ..     466     518 .. 0.83
   6 ?   -2.2   0.2       3.6   4.6e+03      24      50 ..     528     554 ..     520     558 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 3.6e-05
  U3_assoc_6 14 kglFtkeEikeIv.kkrrkfEyklqrrgkkkedflkYieyElnLek 58
                  +++ eE+ke   +kr++fE+ l+r +    ++++Y ++E++  +
  CCD26043.2 39 VDILDLEELKEFQrRKRTEFETYLKRNRLDMGQWIRYGQFEIEQHD 84
                5688888999986268*************************98655 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.5
  U3_assoc_6  25 IvkkrrkfEyklqrrgk 41 
                 I k+ r++E+ l + ++
  CCD26043.2 309 IGKRKREYETYLLKNPQ 325
                 55666778877766554 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 3.1
  U3_assoc_6  16 lFtkeEikeIvkkrrkfEyklqrrgkkk 43 
                 +F + E+ +I k r+++ + ++   ++k
  CCD26043.2 383 IFLELETDDIEKCRTYYKMLINEVIPNK 410
                 6778899999999998888887776665 PP

  == domain 4  score: 7.5 bits;  conditional E-value: 0.0032
  U3_assoc_6  43 kedflkYieyElnLeklrkkRrkr 66 
                  + f+kYie E+nL++  + R+  
  CCD26043.2 448 DKLFMKYIEIEMNLKEFDRVRKLY 471
                 5679**********9988877655 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.069
  U3_assoc_6  29 rrkfEyklqrrgkkkedflkYieyElnLek 58 
                 r+ +E  lq  + +++ +++Yie E +L +
  CCD26043.2 468 RKLYEKYLQFNPGNLNTWISYIELEASLGD 497
                 7779999999999************99965 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 3.6
  U3_assoc_6  24 eIvkkrrkfEyklqrrgkkkedflkYi 50 
                 +++kk  +fE++ q  ++  e + kY 
  CCD26043.2 528 QMMKKFIDFETEEQEYDNARELYEKYL 554
                 577888888888887777777777776 PP

>> DIOX_N  non-haem dioxygenase in morphine synthesis N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       2.6   3.3e+03      74      98 ..     570     592 ..     522     609 .. 0.56
   2 ?   11.8   0.4   0.00025      0.31      38      84 ..     607     654 ..     602     685 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 2.6
      DIOX_N  74 ysrlgeektdg..kkldwkesfdlgte 98 
                 y+++      +  + +d++e ++   e
  CCD26043.2 570 YQNSTP----TkeQLQDIRERLENEEE 592
                 333211....12246666666666666 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00025
      DIOX_N  38 gvpeelidelfeaareFFalPeeeKeklakspsfrGys.rlgeektdg 84 
                  v++e ++ +fe a eF++   ++K+++ + ++f+Gy+ ++g+e+t++
  CCD26043.2 607 EVNKENARSVFEKAIEFYKTQHDTKRRILMLEAFQGYEeTYGTEETKE 654
                 588999*******************************95668888876 PP

>> Arc_PepC_II  Archaeal Peptidase A24 C-terminus Type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.59   7.5e+02      44      72 ..      48      76 ..      19      77 .. 0.84
   2 ?    7.1   0.1    0.0062       7.9      32      72 ..     524     568 ..     508     569 .. 0.75
   3 ?   -1.2   0.5       2.3     3e+03      40      65 ..     647     671 ..     585     677 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.59
  Arc_PepC_II 44 keldeelrkelkkykkkglieetvWvtyg 72
                 ke +++ r e+++y k++ ++   W+ yg
   CCD26043.2 48 KEFQRRKRTEFETYLKRNRLDMGQWIRYG 76
                 466688899************99***998 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0062
  Arc_PepC_II  32 dgk..ikrkfisvekeld..eelrkelkkykkkglieetvWvtyg 72 
                  + +  +++kfi++e+e +  ++ r+ ++ky k    ++++W++++
   CCD26043.2 524 ESRlqMMKKFIDFETEEQeyDNARELYEKYLKLSDYSPEIWISFA 568
                  444448889999887665447888889999999988999****97 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 2.3
  Arc_PepC_II  40 isvekeldeelrkelkkykkkgliee 65 
                  + +e e +e+l k++ +++kk++ie+
   CCD26043.2 647 YGTE-ETKERLLKRMPQVVKKRIIED 671
                  2333.455777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1172  (0.065369); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.46
# Mc/sec: 4644.81
//
Query:       CCD26044.2  [L=524]
Description: hypothetical protein NDAI_0G02670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-40  137.7   0.7    4.4e-40  136.5   0.7    1.6  1  SF1-HH           Splicing factor 1 helix-hairpin domain
    8.3e-08   32.0   0.1    3.1e-07   30.1   0.1    1.9  2  KH_1             KH domain
      2e-05   24.4   9.8    0.00015   21.7   1.0    2.3  2  zf-CCHC          Zinc knuckle
     0.0048   16.8   8.2      0.062   13.3   2.2    2.7  2  zf-CCHC_3        Zinc knuckle
  ------ inclusion threshold ------
      0.074   13.4   4.9       0.14   12.5   4.9    1.4  1  Lar_restr_allev  Restriction alleviation protein Lar
       0.23   11.6   2.1       0.54   10.4   2.1    1.6  1  PHD_4            PHD-finger
       0.27   11.0   5.6        3.3    7.5   0.2    2.3  2  zf-CCHC_4        Zinc knuckle
       0.63    9.9   8.4        2.2    8.2   2.1    3.0  2  zf-CCHC_6        Zinc knuckle


Domain annotation for each model (and alignments):
>> SF1-HH  Splicing factor 1 helix-hairpin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   0.7   1.9e-43   4.4e-40       4     112 ..      23     130 ..      20     131 .. 0.94

  Alignments for each domain:
  == domain 1  score: 136.5 bits;  conditional E-value: 1.9e-43
      SF1-HH   4 rWgeeeekekkakieglptaipgnltqeqleayllqlrieeitrkLrtgdl.vppeeeeRspSPpPvYdanGkRtntrevrvrkkLekerhelieeavk 101
                  Wg+ +ek+k ++   lpt+i+g+lt+eq++ y++++ri+eit kLr+g    pp++++RspSPpP Yda+GkR+nt e+r+r+kLe+erh+l+e a +
  CCD26044.2  23 LWGDPTEKKKFIP--LLPTKITGALTKEQMSIYQVMFRIQEITLKLRSGAAlEPPKRKNRSPSPPPSYDAQGKRINTSEQRYRRKLEEERHRLVEIANR 119
                 6999877666665..8**********************************879999******************************************* PP

      SF1-HH 102 iipsfkpPadY 112
                 +ip f+pP+dY
  CCD26044.2 120 TIPFFVPPSDY 130
                 *********** PP

>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1   1.4e-10   3.1e-07       8      43 ..     150     200 ..     139     220 .. 0.69
   2 ?   -2.5   0.0       2.1   4.6e+03      30      40 ..     298     309 ..     295     315 .. 0.66

  Alignments for each domain:
  == domain 1  score: 30.1 bits;  conditional E-value: 1.4e-10
                 GGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT................. CS
        KH_1   8 sslvgriIGkgGsnIkeIreetgakIkvpk.sedeg..............s 43 
                  ++vg+++G++G+++k+++e++g+kI + + ++  +              s
  CCD26044.2 150 VNFVGLLLGPRGNTLKKLQEDSGCKISIRGrGSVKEgksstdlpkgandmS 200
                 468************************875333322455555555555554 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.1
                 T-EEEEES.STT CS
        KH_1  30 gakIkvpk.sed 40 
                  +kI +p+ +++
  CCD26044.2 298 DCKISLPPrPSP 309
                 79***9964443 PP

>> zf-CCHC  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   2.1    0.0023       5.2       2      18 .]     260     276 ..     259     276 .. 0.89
   2 !   21.7   1.0   6.8e-08   0.00015       2      17 ..     285     300 ..     284     301 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0023
                 CTSSSSSSSSTTTTSTS CS
     zf-CCHC   2 kCynCGepGHiardCpk 18 
                 +C  CG  GH   dCp+
  CCD26044.2 260 PCPICGLQGHKRYDCPN 276
                 6888************6 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 6.8e-08
                 CTSSSSSSSSTTTTST CS
     zf-CCHC   2 kCynCGepGHiardCp 17 
                 +C++CG++GH  rdC+
  CCD26044.2 285 TCRRCGQTGHTTRDCK 300
                 8**************7 PP

>> zf-CCHC_3  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.4    0.0039       8.7       7      23 ..     261     277 ..     256     283 .. 0.81
   2 !   13.3   2.2   2.8e-05     0.062       5      21 ..     284     300 ..     280     316 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0039
   zf-CCHC_3   7 CQkClkkGHwtYECkna 23 
                 C  C+ +GH  Y C+n+
  CCD26044.2 261 CPICGLQGHKRYDCPNK 277
                 777************64 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 2.8e-05
   zf-CCHC_3   5 aaCQkClkkGHwtYECk 21 
                 ++C +C+++GH t  Ck
  CCD26044.2 284 VTCRRCGQTGHTTRDCK 300
                 68**************9 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   4.9   6.3e-05      0.14       2      42 ..     257     296 ..     256     302 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.3e-05
  Lar_restr_allev   2 eLkpCPfCggravlersqrvvaeigqcvyCadCgastpwfk 42 
                      +  pCP Cg ++ +  +  +++  +q+v+C  Cg  t +++
       CCD26044.2 257 DNRPCPICGLQGHKRYDCPNKETFAQMVTCRRCGQ-TGHTT 296
                      678******************99999********9.44444 PP

>> PHD_4  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.1   0.00024      0.54       6      44 ..     260     299 ..     256     305 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00024
       PHD_4   6 aCivCgedgkedevveeesetpsslmeCsvCyeivH..peC 44 
                  C +Cg++g++     + +et  ++++C  C ++ H  ++C
  CCD26044.2 260 PCPICGLQGHKRYDCPN-KETFAQMVTCRRCGQTGHttRDC 299
                 5**********976666.99*************99944455 PP

>> zf-CCHC_4  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.2    0.0015       3.3      34      48 ..     261     275 ..     258     276 .. 0.90
   2 ?    5.4   1.1    0.0065        15      34      48 ..     286     300 ..     282     301 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0015
   zf-CCHC_4  34 CyiCgvlGHsdkrCd 48 
                 C iCg+ GH++ +C+
  CCD26044.2 261 CPICGLQGHKRYDCP 275
                 9*************8 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0065
   zf-CCHC_4  34 CyiCgvlGHsdkrCd 48 
                 C  Cg  GH+ ++C+
  CCD26044.2 286 CRRCGQTGHTTRDCK 300
                 99************7 PP

>> zf-CCHC_6  Zinc knuckle
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.4     0.011        25       4      24 ..     261     279 ..     259     285 .. 0.83
   2 ?    8.2   2.1   0.00096       2.2       1      18 [.     283     298 ..     283     313 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.011
   zf-CCHC_6   4 CknCGAFGHtarSkrCPmkcw 24 
                 C  CG  GH++    CP k+ 
  CCD26044.2 261 CPICGLQGHKR--YDCPNKET 279
                 788********..99***986 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00096
   zf-CCHC_6   1 rvKCknCGAFGHtarSkr 18 
                 +v C+ CG  GHt+r   
  CCD26044.2 283 MVTCRRCGQTGHTTR--D 298
                 688**********95..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       730  (0.0407162); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3690.03
//
Query:       CCD26045.2  [L=846]
Description: hypothetical protein NDAI_0G02680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.6e-75  250.6   0.1    1.5e-74  249.6   0.1    1.5  1  Lactamase_B_6  Metallo-beta-lactamase superfamily domain
      8e-24   84.7  10.4    2.1e-23   83.4   0.4    3.9  3  CPSF100_C      Cleavage and polyadenylation factor 2 C-termin


Domain annotation for each model (and alignments):
>> Lactamase_B_6  Metallo-beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.6   0.1   1.7e-78   1.5e-74       1     193 []      19     213 ..      19     213 .. 0.98

  Alignments for each domain:
  == domain 1  score: 249.6 bits;  conditional E-value: 1.7e-78
  Lactamase_B_6   1 lLeldn.vkiLlDvGwdeskvslesalkelekviptvdliLLshatlehlGayallyakfksklllnipvyatlpvvkLGrvslldlyaskgllgp 95 
                    lL++dn v+iL+D+Gw +s vs+e++++++++vip+vd+iLLs++t e+lGay+lly++f s++ ++i+vy+tlp+++LGrvs++++yaskg++gp
     CCD26045.2  19 LLKFDNvVTILIDPGWASSAVSYEDSVRYWTNVIPEVDIILLSQPTGECLGAYTLLYTNFLSHFKSRIEVYSTLPIANLGRVSMIESYASKGIIGP 114
                    79***856**************************************************************************************** PP

  Lactamase_B_6  96 edseeleledideafdkiktlkYsQklelkskldgltitaynaGhtlGGtiWkiskesekivYavdwnhakeshLngaalld.ssgkvleqllrpt 190
                    +++++l+ledi+++fd+i+ lkYsQ+++l+sk+dgl++ ayn+G+++GGtiW+is++sek++Y+ +wnh+++s+Ln a+lld ++gk+l +ll+p+
     CCD26045.2 115 YNTNRLDLEDIEKSFDHISILKYSQTVDLRSKFDGLSLIAYNSGSNPGGTIWSISTYSEKLIYVHRWNHTRDSILNPASLLDqTTGKPLASLLKPS 210
                    *********************************************************************************84678*********9 PP

  Lactamase_B_6 191 ali 193
                     +i
     CCD26045.2 211 GVI 213
                    887 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2     0.058   5.2e+02      40      58 ..     477     495 ..     409     526 .. 0.69
   2 ?   -0.6   0.5      0.15   1.3e+03      55      96 ..     568     623 ..     530     639 .. 0.46
   3 !   83.4   0.4   2.3e-27   2.1e-23       4     170 .]     712     843 ..     709     843 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.058
   CPSF100_C  40 eekeeeeeeeeeeeeeeea 58 
                 ++++eeee+eee+e+e++a
  CCD26045.2 477 TNADEEEEDEEEDEDEDDA 495
                 2233333333333333333 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.15
   CPSF100_C  55 eeeaskkqkl...........aeksekeaseeeseekkeslp...tldvlpankas 96 
                 ++ ++k q +           ++++ +++++++ ++++  +p    +d l++++++
  CCD26045.2 568 DRLQNKGQDTedmnmpvaqftKKEKLNQNNNNTITDSSFIQPnfdNIDFLKTDNTP 623
                 22223333333333333222122222222222222222222233355555555555 PP

  == domain 3  score: 83.4 bits;  conditional E-value: 2.3e-27
   CPSF100_C   4 sdsLvksLkwqkveg.levatvtgeleieeeaeeaeeeekeeeeeeeeeeeeeeeaskkqklaeksekeaseeeseekkeslptldvlpankasvrsaa 101
                 + +L + L+wq++++ + +a+vtg+l             ke  ++++++++ + +++ k+kl                     +l++l++ +    +a+
  CCD26045.2 712 DPELDQILNWQRISDgYTIAHVTGHLV------------KEIPNATATQAT-KIQQNTKNKL---------------------ILKPLNSMTKV--HAS 774
                 67788889*****988**********9............222333333222.3333444444.....................66666654444..577 PP

   CPSF100_C 102 qplfvGdlrLadLkkallssgikAEFrgeGtLvidgaVaVrKsakGrieiegvvletfyeVrkaiYegl 170
                  +l vGd+rL +Lk+ l+++++ AEF+geGtLv+d++V+VrK + G+ +i+g  +e f  V+k + e+l
  CCD26045.2 775 GALSVGDVRLVELKRNLTAKNHVAEFKGEGTLVVDNKVTVRKISDGETVIDGPPSELFQLVKKSVTEML 843
                 9**************************************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1102  (0.0614647); expected 358.6 (0.02)
Passed bias filter:                      496  (0.0276647); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 5956.63
//
Query:       CCD26046.2  [L=822]
Description: hypothetical protein NDAI_0G02690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.7e-147  491.0   3.5   2.9e-147  490.3   3.5    1.4  1  Avl9      Transport protein Avl9
    4.7e-08   33.0   1.9     0.0005   20.0   0.0    3.1  3  SPA       Stabilization of polarity axis
    2.4e-07   30.6   1.3    2.4e-07   30.6   1.3    4.8  4  DUF2347   Uncharacterized conserved protein (DUF2347)
    9.2e-06   25.7   1.4    7.8e-05   22.7   1.4    2.3  1  DENN      DENN (AEX-3) domain
  ------ inclusion threshold ------
       0.09   13.3   0.1       0.09   13.3   0.1    6.3  2  Afi1      Docking domain of Afi1 for Arf3 in vesicle traffick


Domain annotation for each model (and alignments):
>> Avl9  Transport protein Avl9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  490.3   3.5    8e-151  2.9e-147       1     378 [.      10     413 ..      10     414 .. 0.97

  Alignments for each domain:
  == domain 1  score: 490.3 bits;  conditional E-value: 8e-151
        Avl9   1 ilailvvgFhHkkGpevefsyppeeeekeekesewklLpflalpDGsHnfeedfvyFtleede.................seteeektlfgiscvrQik 82 
                 ila ++v+FhHk+Gpeve++y+    ++++++++w +Lpf+alpDGsH+f+e+f+yFtl ++e                 +e ++ +t+f++sc+rQi+
  CCD26046.2  10 ILAACLVDFHHKRGPEVEYWYG--LPKDTNTSQLWPNLPFQALPDGSHSFKETFAYFTLLYNEkkkcgpksnsgatdipeEELQDYTTFFAVSCSRQID 106
                 6789******************..8899999******************************99****************9999**************** PP

        Avl9  83 aeelkartadvtRstvQKsvvvlsklpifgkikekLslitkayfeqkdfsnteilkelyeqlnaelkskekeel..........eesklfvglslrelv 171
                 +++l ++++d+tRstvQK++v++s++pifg+ik+kLs++t+a+f q df++++i+++lye+l++++++++ +            +e++l++gl+lr+++
  CCD26046.2 107 SDKLIHKSKDITRSTVQKAIVIISRQPIFGQIKDKLSIVTNAFFLQYDFNDKSIIVSLYESLKSMYSNQSPSLSptsviqernnSENRLYIGLCLRKII 205
                 ***************************************************************9998877665589999998877788*********** PP

        Avl9 172 lkfrhkvLvlfKlllLekkvlvygspveklcelilsliSLipelieklqdsasplleslesdlelkkpeslkesdrksvleqlglPlqiFekgalflPY 270
                 ++f+++vL+++K+llLe+k+++ygs+ve+lc+l+++liSLip+l+++lq+++sp+l +  s+  ++ ++s+k+sdr+s  ++lglPlqiFekg +f+PY
  CCD26046.2 206 YDFKKDVLLILKALLLERKIIFYGSDVETLCNLQFGLISLIPNLLSNLQNCGSPQLFKDFSH--MEVVTSFKSSDRQSIIRFLGLPLQIFEKGGMFSPY 302
                 ********************************************************999999..9999******************************* PP

        Avl9 271 lpLqqldlLsdksvksflvGtsNsLllqqkelladvlvdvdeaeieikdkelkkalqlsteDkrfidelvkkveetkedaeeet...egfeGsddwiRa 366
                 +pLqql+++++k +++f++GtsNsLl +q+++l+dv+++vd++++e+ +k+l+ +lql++ Dk++i+++ + v +t+++++eet   +++eGs+d+iR+
  CCD26046.2 303 TPLQQLNDIKSKVTEFFVIGTSNSLLSEQRNELCDVFINVDDKTVEVINKSLQPILQLTSYDKKWIESISSIVINTWNENDEETpktSEYEGSEDFIRW 401
                 ********************************************************************************99989999*********** PP

        Avl9 367 qfeeYlvallss 378
                 qfe+Y ++llss
  CCD26046.2 402 QFEDYFTCLLSS 413
                 **********98 PP

>> SPA  Stabilization of polarity axis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.65   2.3e+03      18      40 ..     117     138 ..     108     158 .. 0.75
   2 !   10.9   0.1   9.5e-05      0.34       6      53 ..     203     248 ..     200     284 .. 0.79
   3 !   20.0   0.0   1.4e-07    0.0005      66     111 ..     300     348 ..     280     351 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.65
         SPA  18 linalltskriivlstkasadev 40 
                 + ++++++k i+++s++   +++
  CCD26046.2 117 I-TRSTVQKAIVIISRQPIFGQI 138
                 4.788899999999998776665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 9.5e-05
         SPA   6 kllekftpeiillinalltskriivlstkasadevsefvLalsnlisp 53 
                 k++  f +++ l+++all++ +ii+++++ +   +++    l +li  
  CCD26046.2 203 KIIYDFKKDVLLILKALLLERKIIFYGSDVET--LCNLQFGLISLIPN 248
                 67788999********************9988..99988888888875 PP

  == domain 3  score: 20.0 bits;  conditional E-value: 1.4e-07
         SPA  66 fPyvdlseldalekvpg..yIvGvtNPiF.eeqeqlWDvlydldsgsvk 111
                  Py++l++l+++++  +  +++G++N +  e++++l Dv++++d+++v 
  CCD26046.2 300 SPYTPLQQLNDIKSKVTefFVIGTSNSLLsEQRNELCDVFINVDDKTVE 348
                 7*******99998876668*********97778889**********997 PP

>> DUF2347  Uncharacterized conserved protein (DUF2347)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   1.3   6.6e-11   2.4e-07       2     277 ..      14     346 ..      13     352 .. 0.65
   2 ?   -1.1   0.4      0.31   1.1e+03     106     157 ..     482     544 ..     477     560 .. 0.47
   3 ?   -4.5   6.5       3.4   1.2e+04     109     146 ..     550     594 ..     494     622 .. 0.55
   4 ?   -2.6   3.6      0.93   3.3e+03      92     134 ..     672     737 ..     635     771 .. 0.56

  Alignments for each domain:
  == domain 1  score: 30.6 bits;  conditional E-value: 6.6e-11
     DUF2347   2 flikFDvkkGytivwsksv....pdveleg.vEfksLPSGihevsedlvyfv....heeyyglsaFrqneveeeeer...nvkmysvGvlvds...sne 85 
                 +l++F  k+G ++++++ +    +  +l   + f++LP G+h+++e + yf+    ++++ g     +   +  ee+     ++++v   +++   s +
  CCD26046.2  14 CLVDFHHKRGPEVEYWYGLpkdtNTSQLWPnLPFQALPDGSHSFKETFAYFTllynEKKKCGP-KSNSGATDIPEEElqdYTTFFAVS--CSRqidSDK 109
                 79************998887333344454349**********************963333332.222222222222233344555554..333335455 PP

     DUF2347  86 rlskawryaekLkellkkllese.......dntsvLeeyf......ekekakkedeesssekksesrerslsdassleteeealssthllssLpelldk 171
                  ++k++    +  +++  +++ +       d++s+ ++ f      +++++  +  es +     +++ sls +s+ ++ ++  ++ ++  +L +++  
  CCD26046.2 110 LIHKSKDITRSTVQKAIVIISRQpifgqikDKLSIVTNAFflqydfNDKSIIVSLYESLK-SMYSNQSPSLSPTSVIQERNNSENRLYIGLCLRKIIYD 207
                 555555555444444444444444555555666666555544333333333222222222.24556777899999999999999999************ PP

     DUF2347 172 lGplifpLykaaLlrkrILllssapveelcslvYllslLssipksleellksessrlrplfnvgvaDipsLekekke...................... 248
                 + + ++ + ka Ll ++I+++ s  ve+lc+l +   l+s+ip+ l++l++     ++ lf+   + ++ ++++k++                      
  CCD26046.2 208 FKKDVLLILKALLLERKIIFYGSD-VETLCNLQFG--LISLIPNLLSNLQNCG---SPQLFK-DFSHMEVVTSFKSSdrqsiirflglplqifekggmf 299
                 *********************998.9*****9875..5777887777776544...344443.334444444444335556777777788888888888 PP

     DUF2347 249 .................sgyiActtdeiLal.kkeLyDvlvklppks 277
                                  + ++  t+++ L+  ++eL Dv++++++k 
  CCD26046.2 300 spytplqqlndikskvtEFFVIGTSNSLLSEqRNELCDVFINVDDKT 346
                 88888888888888888788888888888651467888888887765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.31
     DUF2347 106 esedntsvLeeyf....ekekakkedeessse.........kksesrerslsdassleteeeals 157
                 +  d +++L++ f    ++   k ++++++se          ++ s ++s++d++s +++++++s
  CCD26046.2 482 NGVDTFKILQKKFittfQNL--KINNNTNVSEskrsngdlsLSKVSTHDSSNDVASFASSNKEMS 544
                 55578888888885433222..3333333333123344444333333334444444444444444 PP

  == domain 3  score: -4.5 bits;  conditional E-value: 3.4
     DUF2347 109 dntsvLeeyfekeka..kkedeessse......kksesrerslsda 146
                 +  s+ ++yf+++++  k ++ee++ e      ++  +++++ s+ 
  CCD26046.2 550 NVWSTWKDYFKNKSKanKLDREEEK-EkdngmsRTLSTNSSQHSTG 594
                 4456677777555543322222222.22334432222222222222 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 0.93
     DUF2347  92 ryaekLkellkkllese......dntsvLeeyfekeka.kkedeessse................k 134
                  y ++L+ + kk ++ +      dn +++ +++ +e   + ede ++++                +
  CCD26046.2 672 DYSSELDAKQKKRVHGKkqddeeDNNNEILDIYGTEDEdEDEDEDEDEDededededededededE 737
                 555555555555554444444565555555666333332222222222222333333332222220 PP

>> DENN  DENN (AEX-3) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   1.4   2.2e-08   7.8e-05       2     131 ..     122     245 ..     121     249 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 2.2e-08
        DENN   2 ipkalcilsrlpffelfkkiLkalekrlksssk......eaplesfianlllevplPapgktlklvslaveekillqrpedselPledvdlkelfrcLs 94 
                 ++ka++i+sr p+f  +k+ L++++++   + +        +l++ +++ +++ ++P+ + t ++ + +++e++l+           ++ l++++  ++
  CCD26046.2 122 VQKAIVIISRQPIFGQIKDKLSIVTNAFFLQYDfndksiIVSLYESLKS-MYSNQSPSLSPTSVIQERNNSENRLY----------IGLCLRKIIYDFK 209
                 689***********************99888876666666777777777.77778888887777744444444444..........4556666666665 PP

        DENN  95 ienilqlfeavLlErriillSeklarLtsvaealval 131
                  + +l +++a+LlEr+ii++ +++++L +    l +l
  CCD26046.2 210 -KDVLLILKALLLERKIIFYGSDVETLCNLQFGLISL 245
                 .67999********************98876666555 PP

>> Afi1  Docking domain of Afi1 for Arf3 in vesicle trafficking
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.1   2.5e-05      0.09       6      63 ..      17      76 ..       9     130 .. 0.72
   2 ?  -60.8  85.1         5   1.8e+04      61     111 ..     711     762 ..     479     821 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.5e-05
        Afi1  6 eFdidkGpvikhqY..PkaipgdetlseLAelmlPdqvhkrkqDitvFfLykdtsteeee 63
                +F+ ++Gp ++  Y  Pk+   ++   +L    lPd++h+ k+ +  F+L ++++++   
  CCD26046.2 17 DFHHKRGPEVEYWYglPKDTNTSQLWPNLPFQALPDGSHSFKETFAYFTLLYNEKKKCGP 76
                7***********99889996656666799999*****************99998765443 PP

  == domain 2  score: -60.8 bits;  conditional E-value: 5
        Afi1  61 eeeleeeekknklekrkkkkse..deddvdeedeeeeddnedldelskdeeek 111
                 e+e+e+e+++++ +++++++++  +++d+de+++e+ed++ed+de +kde+e+
  CCD26046.2 711 EDEDEDEDEDEDEDEDEDEDEDedEDEDEDEDEDEDEDEDEDEDE-NKDEDED 762
                 222222222222222222222210112222222222222222222.3333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1994  (0.111216); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                       205  (0.011434); expected 17.9 (0.001)
Passed Fwd filter:                        87  (0.00485247); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.86u 0.40s 00:00:02.26 Elapsed: 00:00:00.60
# Mc/sec: 4100.07
//
Query:       CCD26047.2  [L=447]
Description: hypothetical protein NDAI_0G02700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.2e-67  225.3   0.0    1.3e-66  224.7   0.0    1.3  1  Pkinase         Protein kinase domain
    7.6e-31  107.3   0.0    1.3e-30  106.6   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    3.3e-06   26.3   0.1    3.3e-06   26.3   0.1    1.5  2  Haspin_kinase   Haspin like kinase domain
    0.00016   21.1   0.1    0.00061   19.2   0.1    1.8  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0003   20.8   0.3     0.0025   17.8   0.0    2.3  3  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
      0.011   16.3   1.7      0.024   15.2   0.7    2.0  2  Ribosomal_60s   60s Acidic ribosomal protein
      0.014   14.7   0.0       0.37   10.1   0.0    2.3  2  Kinase-like     Kinase-like
      0.026   14.2   0.0       0.06   13.0   0.0    1.6  1  FTA2            Kinetochore Sim4 complex subunit FTA2
      0.044   12.6   1.9       0.77    8.5   0.0    2.1  2  Pkinase_fungal  Fungal protein kinase
      0.051   13.2   0.0       0.12   12.0   0.0    1.6  2  RIO1            RIO1 family
        6.7    7.0  15.0         11    6.3  15.0    1.3  1  YbgS            YbgS-like protein


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.7   0.0   7.9e-70   1.3e-66       1     264 []      23     302 ..      23     302 .. 0.88

  Alignments for each domain:
  == domain 1  score: 224.7 bits;  conditional E-value: 7.9e-70
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladllerkgslsee 98 
                 y +l+ +G G+fG V +a+++ t++ vA+Kki k   +    k++ rE+k+lk+l h+n++ l ++f +  +++y+v+e+   ++l++ll+  + l+++
  CCD26047.2  23 YADLNPVGMGAFGLVCSATDNLTNQPVAIKKIMKPFSTAVLAKRTYRELKLLKHLTHENLICLQDIFLSpLEDIYFVTELQG-TDLHRLLQ-TRPLEKQ 119
                 567889*************************************************************985689******876.66*****8.589**** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslGvilyelltgkpp 196
                  ++ +++qil+gl+y+Hs+g+iHrDlKp+NiLi+e+ +lKi+DFGla+  + +  +t +v t++Y+APE++ + ++y+ +vD+Ws+G+i++e++ gkp+
  CCD26047.2 120 FVQYFLYQILRGLKYVHSAGVIHRDLKPSNILINENCDLKICDFGLARIQDPQ--MTGYVSTRYYRAPEIMlTWQKYDVEVDIWSAGCIFAEMIEGKPL 216
                 ************************************************98885..7**************9899************************* PP

                 TTTSSHHHHHHHHHHTHHHHHHHCT....SHH...HHHTTS.....................-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilg....etkeklpeasei.....................seeakdllkkllkkdpkkRltaeellqhpyl 264
                 f+g+++       ++q+  i+++lg    ++ +++  ++++                     +++a dll+k+l  +pkkR+ta+++l hpyl
  CCD26047.2 217 FPGKDH-------VHQFSIITDLLGsppaDVINTIGSENTLkfvtslphrdpipfsqrfktvEPDAVDLLEKMLVFEPKKRVTAAQALTHPYL 302
                 **5555.......4554444455554444222222222222445666888888999999999*****************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0     8e-34   1.3e-30       6     209 ..      28     220 ..      25     235 .. 0.86

  Alignments for each domain:
  == domain 1  score: 106.6 bits;  conditional E-value: 8e-34
                  EEEEESSEEEEEEEEETTTTSSEEEEEEEEE.STTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTTTSB CS
  Pkinase_Tyr   6 klGeGafGkVvegtlkgekekkevkVavKtl.keeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkekeklt 101
                   +G GafG V+++t +     +++ Va+K++ k  +t+   ++ ++e+k++k+l h+n++ l  + +   e +++vte+ +g dL+  L+++   +l+
   CCD26047.2  28 PVGMGAFGLVCSATDN----LTNQPVAIKKImKPFSTAVLAKRTYRELKLLKHLTHENLICLQDIFLsPLEDIYFVTEL-QGTDLHRLLQTR---PLE 117
                  689**********999....8999****98747777788899***********************9977788******7.788******998...999 PP

                  HHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHH.SEEEHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 102 lkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslke.kkftsksDvWsfGvllwEi 198
                   + +  f +q+ +G++y++s  ++Hrdl   N+L++en   ki+DfGLar    d ++   ++      + apE++ + +k+ ++ D+Ws G +  E+
   CCD26047.2 118 KQFVQYFLYQILRGLKYVHSAGVIHRDLKPSNILINENCDLKICDFGLARIQ--DPQM---TGYVSTRYYRAPEIMLTwQKYDVEVDIWSAGCIFAEM 210
                  999999********************************************77..3333...3333444567***9766267***************** PP

                  HTTSSGTTTTS CS
  Pkinase_Tyr 199 ftlgespypgl 209
                  ++ g+  +pg 
   CCD26047.2 211 IE-GKPLFPGK 220
                  99.77766665 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1     2e-09   3.3e-06     155     260 ..      63     172 ..      11     198 .. 0.78
   2 ?   -4.8   1.2       5.5     9e+03      38      57 ..     396     416 ..     374     429 .. 0.45

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2e-09
  Haspin_kinase 155 lvkgtypglllllqdkvlkek....pdfyseqqlflvlllkdkGtdLeev.klksw..kqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdkn 243
                    l k ty +l ll   ++++e+     d++ +    ++ + + +GtdL ++ + +    + ++  ++qi+  L+ + ++    HRdL+  niL+++n
     CCD26047.2  63 LAKRTYRELKLLK--HLTHENliclQDIFLSPLEDIYFVTELQGTDLHRLlQTRPLekQFVQYFLYQILRGLKYVHSA-GVIHRDLKPSNILINEN 155
                    5566666655442..233333334457777888889999999*****9987555441045777889****99999766.778************** PP

  Haspin_kinase 244 lnvtlidlklsRlesse 260
                        ++d+ l+R+++++
     CCD26047.2 156 CDLKICDFGLARIQDPQ 172
                    *************9544 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 5.5
  Haspin_kinase  38 ssssnkislPv.kdqvsrdki 57 
                    + ++n+is+ v ++q+s ++ 
     CCD26047.2 396 QLNNNNISSTVsPSQISSTEH 416
                    223333322221222222222 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   3.8e-07   0.00061      43     166 ..      53     163 ..      49     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 3.8e-07
         Kdo  43 klskdlyrfklgrtravrEfrllkrLeeagvavpkpvaagavkvgleyrAlllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnH 141
                 k++k  ++  + + r  rE++llk L ++ +  ++ ++     +        +te l+g+ dL  ll++ + l+++  +  l ++ r  +  h+agv H
  CCD26047.2  53 KIMKP-FSTAVLAKRTYRELKLLKHLTHENLICLQDIFLSPLEDI-----YFVTE-LQGT-DLHRLLQT-RPLEKQFVQYFLYQILRGLKYVHSAGVIH 142
                 56666.555566778888999999999999998888888765543.....34554.7775.9******7.779************************** PP

         Kdo 142 adlyaknillqqeeeeeaeiwliDl 166
                 +dl + nil++++      + + D+
  CCD26047.2 143 RDLKPSNILINENC----DLKICDF 163
                 **********9986....4444455 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.6   2.5e+03      30      84 ..      60     109 ..      53     136 .. 0.60
   2 !   17.8   0.0   1.5e-06    0.0025     148     201 ..     116     171 ..      90     173 .. 0.66
   3 ?   -0.2   0.0      0.46   7.5e+02      87     106 ..     367     386 ..     337     412 .. 0.61

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 1.6
                 TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTE.EEEEEE----EE-SS CS
         APH  30 paraaeeirrevallrlLakagvpvPevlagdtddeeigl.lfalieyvpgrsllr 84 
                 +a +a ++ re++ll++L   ++ + + + +  +     l   ++++ + g++l+r
  CCD26047.2  60 TAVLAKRTYRELKLLKHLTHENLICLQDIFL--SP----LeDIYFVTELQGTDLHR 109
                 5557777888888888888655545555552..11....12234555555555555 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 1.5e-06
                 HHHHHHHHHHHH--S....SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEEC CS
         APH 148 leeqvlaalaallpg....elptvllHgDlhpgNllvdpddgrvtGviDfedaglgpp 201
                 le+q+ + ++   ++      +++++H+Dl+p N+l++++ +    + Df++a++ +p
  CCD26047.2 116 LEKQFVQYFLYQILRglkyVHSAGVIHRDLKPSNILINENCDL--KICDFGLARIQDP 171
                 444433333333333344456899**************44444..59********999 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHHHHHCCHH CS
         APH  87 saaqlpellealgeflaalh 106
                 +aa ++++++a+++++a+ +
  CCD26047.2 367 TAAAAQAQAQAMAQAQAQAQ 386
                 23333333333333333322 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       5.6   9.2e+03      15      30 ..     268     283 ..     265     293 .. 0.85
   2 ?   15.2   0.7   1.5e-05     0.024      41      74 ..     352     388 ..     321     397 .. 0.47

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 5.6
                    XXXXXXXXXXXXXXXX CS
  Ribosomal_60s  15 gveveaarvkllvkal 30 
                    +++ve+ +v+ll k+l
     CCD26047.2 268 FKTVEPDAVDLLEKML 283
                    7899999999999876 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 1.5e-05
                    XXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Ribosomal_60s  41 ngaakla...aaaaaaaaaaaaaaaaaaaeekkkeee 74 
                    ++ + ++   ++aaa+aaaa+a+a+a a++++++ +e
     CCD26047.2 352 QIDTTATfddQVAAATAAAAQAQAQAMAQAQAQAQAE 388
                    4444444556333333333333333333333333333 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.06        98      18      62 ..      27      71 ..      19      84 .. 0.77
   2 ?   10.1   0.0   0.00022      0.37     141     194 ..     116     168 ..      95     205 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.06
  Kinase-like 18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeq 62
                 ++++ g +++v  ++d+ t++p+a+k  + p   +  +   ++e 
   CCD26047.2 27 NPVGMGAFGLVCSATDNLTNQPVAIKKIMKPFSTAVLAKRTYREL 71
                 678899999****************98877665555555555544 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00022
  Kinase-like 141 letiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvra 194
                  le+   ++   q++r   + ++ g++h ++++ n+l +e+  l++ +f+ L r 
   CCD26047.2 116 LEKQFVQYFLYQILRGLKYVHSAGVIHRDLKPSNILINENCDLKICDFG-LARI 168
                  44444455558999999******************************97.4444 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.7e-05      0.06     171     211 ..     118     158 ..      97     167 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.7e-05
        FTA2 171 eelevsqlpkllrdlkklhklgIvvrDlkeenyidgkLvDl 211
                 +++ +  l ++lr lk +h++g+++rDlk++n++ ++ +Dl
  CCD26047.2 118 KQFVQYFLYQILRGLKYVHSAGVIHRDLKPSNILINENCDL 158
                 5666667899**********************975544443 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00047      0.77     313     343 ..     126     155 ..     109     177 .. 0.82
   2 ?    2.7   1.2     0.027        44     214     283 ..     352     415 ..     330     443 .. 0.53

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00047
  Pkinase_fungal 313 rDaIkghrsLflkagiLHrDiSenNilitds 343
                     ++ ++g++  +  ag++HrD    Nili+++
      CCD26047.2 126 YQILRGLKYVH-SAGVIHRDLKPSNILINEN 155
                     55667888888.9****************75 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.027
  Pkinase_fungal 214 kdddiaeiRkgldvtka.ekfrskrkvvsssssqelsskaevklkksesskkvekrsvdssvstskrsrle 283
                     + d++a + +++   +a  +  ++++++       + + ++ ++++s+s+++ ++++++s+vs+s+ s++e
      CCD26047.2 352 QIDTTATFDDQVAAATAaAAQAQAQAMA-------QAQAQAQAETQSKSPDQLNNNNISSTVSPSQISSTE 415
                     5555555555555555522222222222.......233333344444444444444444444444433322 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.1e-05      0.12      91     150 ..     103     164 ..      61     175 .. 0.80
   2 ?   -3.7   0.0       4.5   7.4e+03     148     166 ..     263     281 ..     262     281 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 7.1e-05
                 TTEEGGBHHHCG.-.HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GT CS
        RIO1  91 dgvaapklkdve.e.eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvs 150
                 +g+ + +l +++   ++  +  ++++l+ + k ++ ag++H DL   N+l++e+ ++ i D++
  CCD26047.2 103 QGTDLHRLLQTRpLeKQFVQYFLYQILRGL-KYVHSAGVIHRDLKPSNILINENcDLKICDFG 164
                 466666666666433555666778888865.5667*******************999999986 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.5
                 -GTTEEETTSTTHHHHHHH CS
        RIO1 148 DvsQaveldhpnalefLer 166
                  +sQ  ++ +p+a ++Le+
  CCD26047.2 263 PFSQRFKTVEPDAVDLLEK 281
                 589999********99986 PP

>> YbgS  YbgS-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  15.0    0.0069        11      11      79 ..     357     426 ..     352     436 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0069
        YbgS  11 aaltlgsGaalaadsnnGqansaadaGavagdakqnvaPnkvdnskinngst..ntnstatksttdsdkls 79 
                 a++     aa aa+ ++ qa++ a+a a a  + q  +P++++n++i ++ +  +++st ++++ ++++ +
  CCD26047.2 357 ATFDDQVAAATAAA-AQAQAQAMAQAQAQAQAETQSKSPDQLNNNNISSTVSpsQISSTEHQNNNNNSNNT 426
                 55555555666664.789999999***********************987641134444333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1915  (0.10681); expected 358.6 (0.02)
Passed bias filter:                      724  (0.0403815); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 2957.67
//
Query:       CCD26048.2  [L=150]
Description: hypothetical protein NDAI_0G02710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       297  (0.0165653); expected 358.6 (0.02)
Passed bias filter:                      264  (0.0147247); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 1199.65
//
Query:       CCD26049.2  [L=110]
Description: hypothetical protein NDAI_0G02720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-15   55.5  16.9      6e-15   55.5  16.9    2.2  2  Flocculin_t3  Flocculin type 3 repeat
  ------ inclusion threshold ------
        1.5    7.4   6.4        1.6    7.3   6.4    1.0  1  MSP1_C        Merozoite surface protein 1 (MSP1) C-terminus


Domain annotation for each model (and alignments):
>> Flocculin_t3  Flocculin type 3 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5  16.9   6.7e-19     6e-15       1      44 []      12      55 ..      12      55 .. 0.98
   2 ?   -1.9   4.5      0.56   5.1e+03      18      27 ..      65      74 ..      54      90 .. 0.35

  Alignments for each domain:
  == domain 1  score: 55.5 bits;  conditional E-value: 6.7e-19
  Flocculin_t3  1 TtviTiTsCsdnkCsettvttgvstvTttvngvvTvYTTyCPlT 44
                  Tt +TiT C+++ C+et++++ vst+T+tvn+ vT+YTTyCP++
    CCD26049.2 12 TTYVTITDCEEHVCKETVSPALVSTATVTVNNQVTEYTTYCPIS 55
                  9*********999*****************************96 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.56
  Flocculin_t3 18 tvttgvstvT 27
                  +++t     T
    CCD26049.2 65 ASPTSTKAQT 74
                  2222221111 PP

>> MSP1_C  Merozoite surface protein 1 (MSP1) C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.4   0.00018       1.6     241     312 ..      35     104 ..      10     108 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00018
      MSP1_C 241 sdnvkevkealeaykellPkvstseaavttavtadaavpdatPeglsvr..gagvsGavkeetpepvagsvasg 312
                 s  +  v++ + +y  + P +st++ ++tt +++  ++ + t ++ s++   ++ +Ga++++ p  +ag++ +g
  CCD26049.2  35 STATVTVNNQVTEYTTYCP-ISTEHHNSTTKASPTSTKAQ-TKNATSSHtiHSSYTGAAVKALP--AAGALMAG 104
                 566778*************.**********9988765433.33333333003344777777665..45555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1160  (0.0646996); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 804.97
//
Query:       CCD26050.2  [L=177]
Description: hypothetical protein NDAI_0G02730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.9e-31  106.6   0.7    9.8e-31  106.5   0.7    1.0  1  Redoxin   Redoxin
    7.7e-06   25.8   0.1    1.1e-05   25.3   0.1    1.4  1  AhpC-TSA  AhpC/TSA family


Domain annotation for each model (and alignments):
>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.7   1.1e-34   9.8e-31      10     147 .]      18     174 ..       5     174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 106.5 bits;  conditional E-value: 1.1e-34
                 E.........CCEETTCEEEEEHHH..HTTSEEEEEEESTTT-HHHHHTHH..HHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH.....TT-TSEEE CS
     Redoxin  10 t.........lplaatdgnsvslse..fkgkkvvvnfvpgafcPtCsaehp..yleklaellkekgvdvvavvadndafvkefwgk.....eglkfpvl 90 
                 +         +++a++ +++v++ +   ++k+vv+++ p+af+PtCs +h+  y++ l+el  +k vd+v+vv+++++f++++w+k     +  +++++
  CCD26050.2  18 QyiaisksdaDQEACKMPQTVKWGDfiKENKTVVITGAPAAFSPTCSVSHIpgYITYLNELVQDKHVDQVVVVTVDNPFANQAWAKnlgvtDTTHIKFA 116
                 15555556667789***********8668889**********************************************************97778**** PP

                 E-TTSHHHHHTT-TTEEE.GGG.EEE-EEEEEEETTEEEEEEESSSCHT..STTSHHHHH CS
     Redoxin  91 sDgsaaftkalGlrleedaseg.lrtpryavidedgkvvylevepepet..eesnaeavl 147
                 sD++ +f k+lG  +e + ++  +++ r++vi++dgkv+y   e+ p+t  ++ ++e+vl
  CCD26050.2 117 SDAGCNFIKSLG--YEMPVGDDvFWSGRWVVIVKDGKVTYAAAEEHPVTdvTVTSVETVL 174
                 ************..6667777789***********************9999999999987 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   1.3e-09   1.1e-05      16     123 ..      36     154 ..       9     155 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.3e-09
                 EEEECHHH..TTSEEEEEEESTST-CCHH.HHHHHHHHCHHHCC.CTTE.EEEEEESSSCHHHHHHHHH-H.....SSEEEE-TTSHHHHHTT-EETT. CS
    AhpC-TSA  16 etvslsdy..kgkpvvlffypkdwcpvCt.telpalaklyeefk.ergv.evigvsvdspeshkkfiekes....lnfpllsDeegkvakaygvlkee. 104
                 +tv+  d+  ++k vv+   p++++p C   ++p +  +++e+  ++ v +v+ v+vd+p++ +++++  +      ++ +sD  ++++k++g   +  
  CCD26050.2  36 QTVKWGDFikENKTVVITGAPAAFSPTCSvSHIPGYITYLNELVqDKHVdQVVVVTVDNPFANQAWAKNLGvtdtTHIKFASDAGCNFIKSLGYEMPVg 134
                 789999999777****************85689999999877763667778999*****************999999999**********988775556 PP

                 .TTECSCEEEEE-TTSBEEE CS
    AhpC-TSA 105 .kglalratfvidkegkiry 123
                    +     +vi k+gk++y
  CCD26050.2 135 dDVFWSGRWVVIVKDGKVTY 154
                 44444555567777888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       493  (0.0274974); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1290.66
//
Query:       CCD26051.2  [L=544]
Description: hypothetical protein NDAI_0G02740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-08   32.9   5.1    0.00081   19.7   0.6    3.3  3  BTB_2     BTB/POZ domain
     0.0018   17.9  20.9     0.0018   17.9  20.9    1.8  2  SR-25     Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
       0.53    9.6   5.4        1.1    8.6   5.4    1.4  1  DUF4820   Domain of unknown function (DUF4820)


Domain annotation for each model (and alignments):
>> BTB_2  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.6   1.4e-07   0.00081       2      87 ..      25     105 ..      24     110 .. 0.84
   2 !   13.5   0.1   1.2e-05     0.071       4      87 ..     120     212 ..     118     218 .. 0.76
   3 ?   -2.0   0.0      0.82   4.9e+03       3      57 ..     385     399 ..     366     409 .. 0.65

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.4e-07
                 EEEETTEEEEEEHHHHHTSTTSTTTSSGG....GGEETTTTEEEE-S-HHHHHHHHHHHHS.S-B---TTS-HHHHHHHHHHHT-- CS
       BTB_2   2 klnVgGtrfetskstLsrkpdtlLgkllkteelddydeetneyffDRspklFetiLnyyrtggkLhrpeevelkslleElefygle 87 
                 ++ +g  +f+++ s L+     ++++  +t+    +  e+n++f+DR+p++F+ti + ++    +  ++e e ++l  +  +yg  
  CCD26051.2  25 TIQIGQQSFKLNGSSLNSDGPNFFTRYFQTH----TMVENNSLFIDRDPEIFHTITKHLQG-YFIDIKDEYEYTMLFTDSIYYGFP 105
                 5789999999999999999999999999955....5556689******************9.566666678999999999999865 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.2e-05
                 EETTEEEEEEHHHHHTSTTST......TTSSGG.........GGEETTTTEEEE-S-HHHHHHHHHHHHS.S-B---TTS-HHHHHHHHHHHT-- CS
       BTB_2   4 nVgGtrfetskstLsrkpdtl......Lgkllkte.....elddydeetneyffDRspklFetiLnyyrtggkLhrpeevelkslleElefygle 87 
                 nVgG++f++ ks  +r  d+l      L+++ k+      e + +++     ++ Rs ++F+ +L+ +     L+ + +++ +sl eE ++y+  
  CCD26051.2 120 NVGGKSFKIPKSLFRREGDSLnyfqiiLNSFYKEVeqrivEKNLVKTPLPPSYVPRSAEFFQDLLTLLSG-TSLELS-DEKRESLAEECRYYRFL 212
                 99******99999888766542211114444443377676577777777889**************9988.999998.8899**********865 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.82
                 EEETTEEEEEEHHHHHTSTTSTTTSSGG....GGEETTTTEEEE-S-HHHHHHHH CS
       BTB_2   3 lnVgGtrfetskstLsrkpdtlLgkllkteelddydeetneyffDRspklFetiL 57 
                 ++  G++fet++                                        +i+
  CCD26051.2 385 VDLIGRNFETFE----------------------------------------SIF 399
                 444455555554........................................443 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9  20.9     3e-07    0.0018      23     121 ..     250     344 ..     238     363 .. 0.57
   2 ?   -4.1   2.9       1.6   9.7e+03      65      84 ..     422     441 ..     405     452 .. 0.51

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 3e-07
       SR-25  23 sskdssrsssasksqsrkassasekeeerskekkkkkrrrssssssssssssssssssssssssddrkkrgkkkdkkkkkkkkkkkkkkekkkakekak 121
                 s ++s +++ +s+s+ ++   +   ++ + +   k k+ ++  ss+ss+ssssssss+s +ss+++r++ + kk kk++     +++  +kk++++ +k
  CCD26051.2 250 SNSNS-SNQHTSSSSLNRCLDTVG-NRANCNGGIKSKPSSTDVSSNSSASSSSSSSSCSNNSSDNEREEPASKKLKKENMGGV-QENCTTKKHSNK-NK 344
                 22222.333333333333333332.2345556667777766777777777777888888888888888888888888877766.333333333332.33 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.6
       SR-25  65 ssssssssssssssssssss 84 
                 ss ++ s ss++ +s    +
  CCD26051.2 422 SSDTTTSKSSKENPSVRQTQ 441
                 22233333333333333333 PP

>> DUF4820  Domain of unknown function (DUF4820)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.4   0.00018       1.1     107     202 ..     238     337 ..     236     362 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00018
     DUF4820 107 LraikvrglkvkrlrkaeakseaeakkallkkirltLstliC.....srpgrsip.vsseldnsartlte.rksekesaesseskkrnkeerdaeseee 198
                 L+++k rgl+ + +++    ++++++ +l + +    +++ C     s+p+ s + +s++ ++s+   ++  +++++++ +++ +k+ k+e+    +e+
  CCD26051.2 238 LKDLKRRGLRFHSNSNSS--NQHTSSSSLNRCLDTVGNRANCnggikSKPS-STDvSSNSSASSSSSSSScSNNSSDNEREEPASKKLKKENMGGVQEN 333
                 789*******99977766..77888999999999999*****999999999.55523333333333332202222222222222222222222222333 PP

     DUF4820 199 ssed 202
                 ++++
  CCD26051.2 334 CTTK 337
                 3322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1203  (0.067098); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 3915.98
//
Query:       CCD26052.2  [L=403]
Description: hypothetical protein NDAI_0G02750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0049   17.6   4.6      0.011   16.4   4.6    1.6  1  CHORD           CHORD
  ------ inclusion threshold ------
      0.078   12.7   0.5        0.8    9.4   0.5    2.5  1  DNA_pol_A_exo1  3'-5' exonuclease


Domain annotation for each model (and alignments):
>> CHORD  CHORD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   4.6   1.2e-06     0.011       8      45 ..     159     198 ..     154     214 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 1.2e-06
                 T--EE-STT--TT-.EEEB---EEEETTEEEE..TTTTEE CS
       CHORD   8 CgkkfeeeeneeeaeCtyHpgapvfheglkgW..sCCkkk 45 
                 C+ kfe+++  +++ C+yHp +  f  g+k +   CC + 
  CCD26052.2 159 CEMKFEKSDILKKTVCRYHPSKKQFNRGTKVYdyPCCGET 198
                 **********9999**************9975226**654 PP

>> DNA_pol_A_exo1  3'-5' exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.5     9e-05       0.8      64     130 ..     291     368 ..     222     390 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 9e-05
                     -.................HGHHHHHHHT-TTSEEEESSHHHHHHHHHHHHTS--SSEEEHHHHHHHTTHSTT..SSHHHHHHHHHS CS
  DNA_pol_A_exo1  64 v.................alealkrlledenitkvghnakfDlevlardfgielenlfdtmlaayvldyers..hsLdsLaekylg 130
                     +                 +   l++ l ++  + +gh++++Dl v+          ++dt    +vl  +     sL++La + l+
      CCD26052.2 291 FsgvyessmehaisfkkfIDLVLSKSLINKHSILIGHGLENDLNVMRII----HNKIIDT----AVLYSNGRlkTSLKNLAFEILS 368
                     1333344444444446658888999999999*************99762....2233333....2222222222456666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       880  (0.0490825); expected 358.6 (0.02)
Passed bias filter:                      484  (0.0269954); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2849.92
//
Query:       CCD26053.2  [L=4961]
Description: hypothetical protein NDAI_0G02760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     5e-125  412.0   1.7      3e-21   75.9   0.0   10.0  9  AAA_5            AAA domain (dynein-related subfamily)
    1.4e-53  179.6   0.4    9.3e-21   74.0   0.0    5.5  4  AAA_lid_7        Midasin AAA lid domain
    5.1e-33  114.1   7.5      3e-07   30.1   0.0    7.0  6  AAA_7            P-loop containing dynein motor region
      5e-32  110.5   0.0      1e-10   41.6   0.0    8.1  8  AAA_3            ATPase family associated with various cellul
    8.3e-32  109.4   0.0    1.1e-29  102.5   0.0    3.7  2  AAA_lid_5        Midasin AAA lid domain
    1.2e-24   87.2   2.9     0.0011   19.4   0.0    7.8  7  AAA              ATPase family associated with various cellul
      2e-22   80.4  13.0     0.0055   17.1   0.3    9.1  8  AAA_16           AAA ATPase domain
      5e-22   78.3   0.6      0.011   14.8   0.0    9.3  9  AAA_6            Hydrolytic ATP binding site of dynein motor 
    1.2e-21   77.0   0.1    9.3e-06   25.7   0.0    8.1  7  Dynein_heavy     Dynein heavy chain region D6 P-loop domain
    2.7e-19   69.5   0.4    0.00076   19.2   0.0    6.3  6  Sigma54_activat  Sigma-54 interaction domain
    1.3e-15   57.9   0.3       0.15   12.3   0.0    8.5  6  AAA_22           AAA domain
    6.4e-15   55.5   1.0     0.0022   18.1   0.1    7.4  7  Sigma54_activ_2  Sigma-54 interaction domain
    7.7e-15   55.1   0.3       0.15   11.8   0.5    8.0  7  AAA_30           AAA domain
    9.1e-15   54.9   5.8       0.01   15.9   0.0    8.8  7  AAA_14           AAA domain
    1.7e-14   53.9   3.7      0.046   13.7   0.1    6.8  6  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
    1.8e-12   46.9   5.5      0.056   12.5   0.0    6.2  6  T2SSE            Type II/IV secretion system protein
    3.7e-12   45.9   4.8      0.012   14.9   0.0    7.9  9  Zeta_toxin       Zeta toxin
    6.1e-12   45.8   7.7      0.061   13.2   0.3    6.7  6  RsgA_GTPase      RsgA GTPase
    2.8e-10   40.5   0.3      0.075   13.2   0.1    6.8  6  AAA_33           AAA domain
      4e-10   39.6   0.3       0.09   12.3   0.0    5.4  5  AAA_25           AAA domain
    8.4e-10   38.3   0.7        1.9    8.3   0.0    6.4  6  AAA_29           P-loop containing region of AAA domain
    2.4e-09   37.7   1.8        0.2   12.0   0.0    5.9  4  AAA_19           AAA domain
      5e-09   35.8   3.1        4.8    6.5   0.0    8.9 10  Mg_chelatase     Magnesium chelatase, subunit ChlI
    3.1e-08   33.5   2.1       0.44   10.3   0.0    5.7  5  RuvB_N           Holliday junction DNA helicase RuvB P-loop d
    3.6e-08   33.6   5.8       0.91    9.4   0.1    6.7  6  Rad17            Rad17 P-loop domain
    4.6e-08   32.9   1.8      0.062   13.1   0.1    6.0  6  PduV-EutP        Ethanolamine utilisation - propanediol utili
    5.5e-08   32.4   2.3       0.12   11.8   0.0    6.0  6  TniB             Bacterial TniB protein
    5.6e-08   33.4  28.4      0.051   14.1   0.0   10.1  7  AAA_18           AAA domain
      1e-07   32.5  43.1     0.0011   19.4   0.0    9.0  6  ABC_tran         ABC transporter
    1.1e-07   32.2  13.3        1.2    9.6   0.1    8.0  6  RNA_helicase     RNA helicase
    1.1e-07   31.3   0.7      0.084   12.0   0.0    5.7  6  DUF815           Protein of unknown function (DUF815)
    1.2e-07   31.8   6.1        1.9    8.6   0.1    7.1  6  MMR_HSR1         50S ribosome-binding GTPase
    1.2e-07   31.8   2.4        3.2    7.6   0.1    5.7  4  NACHT            NACHT domain
    1.4e-07   31.7   4.2        2.3    8.4   0.1    6.8  6  Roc              Ras of Complex, Roc, domain of DAPkinase
    2.5e-07   30.6   0.1        1.8    8.3   0.0    6.0  6  IstB_IS21        IstB-like ATP binding protein
    1.1e-05   25.7   2.4    2.3e-05   24.7   0.7    2.6  1  VWA              von Willebrand factor type A domain
    3.7e-05   23.4   7.3       0.43   10.2   0.4    5.4  4  SRP54            SRP54-type protein, GTPase domain
    7.1e-05   22.4   3.4        4.2    6.8   0.0    4.9  5  PhoH             PhoH-like protein
    0.00015   22.1   9.2          7    6.9   0.1    6.4  6  AAA_28           AAA domain
    0.00021   21.0   0.4          5    6.7   0.0    4.0  4  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
    0.00051   19.9   0.9         22    4.8   0.0    5.9  5  CPT              Chloramphenicol phosphotransferase-like prot
     0.0014   18.4   0.8        6.4    6.5   0.0    4.2  3  DEAD             DEAD/DEAH box helicase
     0.0031   17.5  10.5        5.3    7.0   0.0    5.6  4  ResIII           Type III restriction enzyme, res subunit
     0.0055   16.5   0.2        7.6    6.2   0.0    5.0  4  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0065   16.3  10.5        2.8    7.7   0.4    6.2  6  ATP_bind_1       Conserved hypothetical ATP binding protein
     0.0081   15.5   0.4        9.3    5.5   0.1    3.9  3  FtsK_SpoIIIE     FtsK/SpoIIIE family
  ------ inclusion threshold ------
        1.1    9.1  13.1         20    5.1   0.6    5.7  5  NTPase_1         NTPase


Domain annotation for each model (and alignments):
>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   1.8e-22   6.7e-20       1     120 [.     318     436 ..     318     449 .. 0.93
   2 !   35.0   0.1   3.1e-11   1.2e-08       1      55 [.     672     726 ..     672     731 .. 0.93
   3 !   32.5   0.0     2e-10   7.5e-08      52     138 .]     835     922 ..     816     922 .. 0.87
   4 !   75.9   0.0   7.8e-24     3e-21       1     138 []    1104    1240 ..    1104    1240 .. 0.97
   5 !   24.9   0.0   4.1e-08   1.6e-05       1      55 [.    1389    1443 ..    1389    1456 .. 0.88
   6 !   46.7   0.0   8.1e-15   3.1e-12      45     138 .]    1495    1585 ..    1465    1585 .. 0.79
   7 !   66.7   0.0   5.2e-21     2e-18       2     138 .]    1771    1907 ..    1770    1907 .. 0.97
   8 !   14.5   0.0   7.1e-05     0.027       1      47 [.    2077    2123 ..    2077    2158 .. 0.89
   9 !   31.5   0.0   3.9e-10   1.5e-07      46     129 ..    2214    2300 ..    2183    2305 .. 0.79

  Alignments for each domain:
  == domain 1  score: 71.5 bits;  conditional E-value: 1.8e-22
                 EEEEE--SSSSHHHHHHHGGGGB..S--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE CS
       AAA_5   1 dvlLvGppGtgKselaerlaaal..nreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrll 95 
                 +v+LvG+ G gK++l+ + ++ +   ++++ + l ++t ++ l+g +     +gt +++ ++l++a++eg+ ++++++++a++evl++Llslle+r+l 
  CCD26053.2 318 PVMLVGQAGAGKTFLINEASKYIqcHDSIVKIHLGEQTDAKLLIGTYTSGekPGTFEWRSGVLTTAVKEGRWVLIEDIDKAPTEVLSILLSLLEKRELT 416
                 59*********************999999999999*************889************************************************ PP

                 ..-SSSEEE---......-EEEEEE CS
       AAA_5  96 leeggelvkaknddllerfrviata 120
                 ++++ge vka+n      f++i t 
  CCD26053.2 417 IPSRGETVKAANG-----FQLISTV 436
                 **********996.....7777664 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 3.1e-11
                 EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--........ CS
       AAA_5   1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslv 55 
                 +vlLvG++GtgK+++++++a+++n+++++++ +++t++ dl+g++++ n++t  v
  CCD26053.2 672 PVLLVGETGTGKTTVVQQMAKFMNKTLTVINVSQQTETGDLLGGYKPVNSKTIAV 726
                 59*******************************************9988887665 PP

  == domain 3  score: 32.5 bits;  conditional E-value: 2e-10
                 .....--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---......-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5  52 tslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvkaknddllerfrviatanpld.rslnelspalrsRf 138
                   +v+++lv+a+r+ge l+lDEv+ a+ ++l+s   ll+e   +   + e  +a++  + ++fr++a +np+   ++ +l + +rsRf
  CCD26053.2 835 FNFVEGSLVKAVRNGEWLLLDEVNLASADTLESISDLLSESSSRSILLSEKGDAEPIRAHPDFRIFACMNPATdVGKRDLPSGIRSRF 922
                 5799***********************************98888777777777777433444***********99************9 PP

  == domain 4  score: 75.9 bits;  conditional E-value: 7.8e-24
                  EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE. CS
       AAA_5    1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrlll 96  
                  +vl++Gp+  gK++++++la  ++ +++ +++++ t  ++ +g + ++  g+ s+++++lv+a r+g  +vlDE++ a+++vl++L++ll+++r l+
  CCD26053.2 1104 PVLVQGPTSAGKTSMIKYLADITGHKFVRINNHEHTDLQEYLGTYITDeTGKLSFREGILVEALRKGYWIVLDELNLAPTDVLEALNRLLDDNRELF 1200
                  5899******************************************999******************************************999999 PP

                  .-SSSEEE---......-EEEEEESS--...-TT-TTHHHHTT- CS
       AAA_5   97 eeggelvkaknddllerfrviatanpld..rslnelspalrsRf 138 
                   + +++v ++ +d    f+++at np+   ++++ ls a+r Rf
  CCD26053.2 1201 IPETQEVVHPHPD----FMLFATQNPPGlyGGRKVLSRAFRNRF 1240
                  9999999999888....************9*************9 PP

  == domain 5  score: 24.9 bits;  conditional E-value: 4.1e-08
                  EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--........ CS
       AAA_5    1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslv 55  
                  +vlLvG++G+gK+++ + l+a++++ + + + +++t++ d++g  ++   + +l+
  CCD26053.2 1389 PVLLVGETGCGKTTICQILSAFMKKDLITLNAHQNTETGDILGAQRPIRNRSELQ 1443
                  59****************************************9988776665555 PP

  == domain 6  score: 46.7 bits;  conditional E-value: 8.1e-15
                  B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---.......-EEEEEESS--..-TT-TTHHHHTT- CS
       AAA_5   45 reikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvkaknddller.frviatanpld.rslnelspalrsRf 138 
                  ++i     +++d+pl +a ++g  ++lDE+  a+++vl++L+s+le +r ll   ++  +      +++ f+++ t+np   ++++elspalr Rf
  CCD26053.2 1495 LNI---LFEWSDGPLITALKTGNFFLLDEISLADDSVLERLNSVLEPERNLLLAEKGTSDSLI--VAKDgFQFLSTMNPGGdYGKKELSPALRNRF 1585
                  444...679*************************************77766655555554322..33346*************************9 PP

  == domain 7  score: 66.7 bits;  conditional E-value: 5.2e-21
                  EEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--...........--------G-SEEEEESGGG--HHHHHHHHHHHHSS.EEE CS
       AAA_5    2 vlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreik..ngttslvdsplvraaregeilvlDEveraesevlnsLlslleer.rll 95  
                  +lL G pG+gK++l+  la +++++++ ++l+++t   dl+g+  +   +g+ +++d p+ ra+++g+ ++lDE + a+++vl+ L+  l++r + +
  CCD26053.2 1771 ILLEGSPGVGKTSLITALADLTGNNLTRINLSEQTDLVDLFGSDAPGekSGEFVWKDAPFLRAMQQGSWILLDEMNLASQSVLEGLNACLDHRgEAY 1867
                  89********************************************999******************************************986789 PP

                  ..-SSSEEE---......-EEEEEESS--...-TT-TTHHHHTT- CS
       AAA_5   96 leeggelvkaknddllerfrviatanpld..rslnelspalrsRf 138 
                  ++e+++  ++ ++     f v+a+ np++  ++++ l ++++ Rf
  CCD26053.2 1868 IPELDRSFSCHPN-----FLVFAAQNPQYqgGGRKGLPKSFVNRF 1907
                  9***********9.....***********9999999999999998 PP

  == domain 8  score: 14.5 bits;  conditional E-value: 7.1e-05
                  EEEEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B-- CS
       AAA_5    1 dvlLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrrei 47  
                  +++LvGp+ +gKs +++ la  l++ev    +++d  + d++g++e 
  CCD26053.2 2077 PLILVGPSNSGKSAIIRTLANILGTEVGFFSMNSDVDSMDILGGYEQ 2123
                  58******************************************993 PP

  == domain 9  score: 31.5 bits;  conditional E-value: 3.9e-10
                  --..........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-SSSEEE---.........-EEEEEESS--.-TT- CS
       AAA_5   46 eik.ngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeggelvkaknddller...frviatanpldrslne 129 
                  +++ + t ++ d+ lv+a+++g+ lvlD  + ++++vl++L+slle++  ll +   + + ++   +++   fr++ t  p +++l++
  CCD26053.2 2214 NVSnGVTFEWFDGMLVKAVEKGHWLVLDNANLCSPSVLDRLNSLLETDGTLLINECSEANGEPR-VIKPhpnFRLFLTVDPKYGELSR 2300
                  33347889**************************************998888888888888775.3444689*****99999955443 PP

>> AAA_lid_7  Midasin AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   2.4e-23   9.3e-21       1     105 [.     489     603 ..     489     604 .. 0.97
   2 !   44.4   0.2   3.9e-14   1.5e-11       1     105 [.    1252    1345 ..    1252    1346 .. 0.97
   3 ?    3.9   0.0      0.16        62       3      64 ..    1600    1659 ..    1598    1684 .. 0.67
   4 !   50.3   0.0   5.7e-16   2.2e-13       1     104 [.    1919    2018 ..    1919    2019 .. 0.95

  Alignments for each domain:
  == domain 1  score: 74.0 bits;  conditional E-value: 2.4e-23
   AAA_lid_7   1 eLeeilqskfpllasvadklievyeelrseqsssrsfs....gspreislRDLlkWcrRlsalldrsg......flspsvreeifleavdvFaaslstq 89 
                 +L++il++k+p+la +++kli  y+++++ ++s++++s    ++ r is+RDL+k+c+Rl al+++++       ++ s+ ++if ea d+Fa+ +s+ 
  CCD26053.2 489 DLHSILCQKYPVLARLIPKLIHSYKAVKKIYHSPKFISlnrgAHARVISVRDLMKLCNRLGALFENNNitkpdqLIELSIYDSIFAEASDCFAGAISEY 587
                 9*********************************999888889************************9******************************* PP

   AAA_lid_7  90 edrlrvaeviaehlgl 105
                 ++ + ++++i+e l++
  CCD26053.2 588 KALEPLIHCIGETLEI 603
                 *************998 PP

  == domain 2  score: 44.4 bits;  conditional E-value: 3.9e-14
   AAA_lid_7    1 eLeeilqskfpllasvadklievyeelrseqsssrsfsgspreislRDLlkWcrRlsalldrsgflspsvreeifleavdvFaaslstqedrlrvae 97  
                  eLe+il+++++++ ++a+k++evy++l+ e+s+sr f  ++   +lRDL++W+ R +              ee++  +++++a+++++++++  + +
  CCD26053.2 1252 ELETILRERCQIAPTYAKKIVEVYRQLSIERSASRLFEQKNSFATLRDLFRWALREAVG-----------YEELAANGYMLLAERCRNPQEKVVIKN 1337
                  8******************************************************9998...........99************************* PP

   AAA_lid_7   98 viaehlgl 105 
                  ++++++++
  CCD26053.2 1338 ILEKVMKV 1345
                  ****9987 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.16
   AAA_lid_7    3 eeilqskf.pllasvadklievyeelrseqsssrsfsgspreislRDLlkWcrRlsalldrsg 64  
                  + i++s+   + +++++ ++++ +   +e        +++  islRD+l W + ++++ ++ g
  CCD26053.2 1600 HMIVESRLlESVKQLTNPVVKFSKWFGEEFGGG---NTTNGIISLRDILAWVQFINSTSEKMG 1659
                  556666665666666666666655555555444...378889*************99977654 PP

  == domain 4  score: 50.3 bits;  conditional E-value: 5.7e-16
   AAA_lid_7    1 eLeeilqskf.pllasvadklievyeelrseqsssrsfs..gspreislRDLlkWcrRlsalldrsgflspsvreeifleavdvFaaslstqedrlr 94  
                  +L  i ++ + ++  +v++kli+++++l++++ ++++++  g+p+e++lRD l+W+++l+++       s   + ++++++  ++ +++++ +d+++
  CCD26053.2 1919 DLLLIAHHLYpNIDPEVCSKLITLMSTLERQVVKKKQWGsvGAPWEFNLRDTLRWLKLLDKQ-------SICEETDVVDFVNIIIKQRFRSISDKEH 2008
                  899*******77**************************99*********************9.......5556999********************* PP

   AAA_lid_7   95 vaeviaehlg 104 
                  + ++i++++g
  CCD26053.2 2009 ADHLIKDIFG 2018
                  ******9997 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.3e-07   4.8e-05       9      76 ..     292     358 ..     285     365 .. 0.86
   2 !   26.2   2.0   1.3e-08   4.8e-06       6      75 ..     643     709 ..     638     714 .. 0.83
   3 !    8.0   0.0    0.0049       1.9      24      67 ..    1093    1133 ..    1074    1191 .. 0.68
   4 !   30.1   0.0   7.9e-10     3e-07       5      66 ..    1359    1419 ..    1356    1433 .. 0.84
   5 !   11.0   0.0   0.00057      0.22      27      74 ..    1762    1806 ..    1743    1811 .. 0.76
   6 !   10.8   0.0   0.00068      0.26       9      67 ..    2051    2106 ..    2047    2121 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 1.3e-07
       AAA_7   9 fseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsan 76 
                 + e +Vpt +t+     l + l+ + pv+lvG++G GKt +i++  k ++  + ++++i +  qt+a+
  CCD26053.2 292 YPESFVPTLKTITALRKLAKQLQYNEPVMLVGQAGAGKTFLINEASKYIQ-CHDSIVKIHLGEQTDAK 358
                 66889***************************************998888.66667777777777775 PP

  == domain 2  score: 26.2 bits;  conditional E-value: 1.3e-08
       AAA_7   6 eakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqtsa 75 
                 +   s+ +  t+ ++r+   +   ++   pvllvG+tGtGKt++++++ k ++    + ++in+s+qt+ 
  CCD26053.2 643 KSANSTAFAITNHSLRLMEQIAVTIQMTEPVLLVGETGTGKTTVVQQMAKFMN---KTLTVINVSQQTET 709
                 55556666779999999999****************************99999...45667788888875 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0049
       AAA_7   24 yllelllknkkpvllvGptGtGKtviikdllkkldkekylslti 67  
                   l++    ++ pvl+ Gpt  GKt++ik l +      ++++ i
  CCD26053.2 1093 NLVRASSGRRFPVLVQGPTSAGKTSMIKYLADITG---HKFVRI 1133
                  56677778899****************97654433...334444 PP

  == domain 4  score: 30.1 bits;  conditional E-value: 7.9e-10
       AAA_7    5 eeakfseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylslt 66  
                  +++++++ +V t+   r+s+l++++l+n+ pvllvG+tG+GKt+i++ l   ++ +++++l+
  CCD26053.2 1359 KSLQLQDSVVWTNGLRRLSVLVSKCLQNNEPVLLVGETGCGKTTICQILSAFMK-KDLITLN 1419
                  6788999**************************************997766666.5554444 PP

  == domain 5  score: 11.0 bits;  conditional E-value: 0.00057
       AAA_7   27 elllknkkpvllvGptGtGKtviikdllkkldkekylsltinfsaqts 74  
                     ++ +kp+ll G+ G+GKt++i+ l +       + + in+s qt+
  CCD26053.2 1762 VRAMQVHKPILLEGSPGVGKTSLITALADLTG---NNLTRINLSEQTD 1806
                  456899******************98765444...5667788888875 PP

  == domain 6  score: 10.8 bits;  conditional E-value: 0.00068
       AAA_7    9 fseilVptvdtvrysyllelllknkkpvllvGptGtGKtviikdllkkldkekylslti 67  
                  +se l+p   ++ +     ++++n+ p++lvGp+ +GK++ii++l + l    + + ++
  CCD26053.2 2051 LSENLIPLECNIEIYESALMCINNNWPLILVGPSNSGKSAIIRTLANILG---TEVGFF 2106
                  566667777777777777899***********************999888...334444 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   6.3e-05     0.024       2     109 ..     319     435 ..     318     445 .. 0.85
   2 !    8.0   0.1    0.0063       2.4       2      44 ..     673     715 ..     672     739 .. 0.85
   3 ?    5.0   0.0     0.054        21      64     129 ..     850     922 ..     823     924 .. 0.69
   4 !   24.7   0.0   4.3e-08   1.6e-05       2     130 ..    1105    1241 ..    1104    1242 .. 0.79
   5 ?    2.5   0.0      0.33   1.3e+02       2      51 ..    1390    1439 ..    1389    1454 .. 0.84
   6 ?   -1.1   0.0       4.2   1.6e+03      54     129 ..    1499    1585 ..    1489    1586 .. 0.65
   7 !   41.6   0.0   2.7e-13     1e-10       2     130 ..    1771    1908 ..    1770    1909 .. 0.88
   8 ?    1.4   0.0       0.7   2.7e+02       6      44 ..    2082    2120 ..    2078    2133 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 6.3e-05
       AAA_3   2 vllegvPGlaktllvkalakaldle..fkriqftpdllPsdilGtevfeekekefefkkGpvfanl.....lladeinrappktqsalleameerqvtv 93 
                 v+l g  G +kt l+++ +k ++++  + +i +        ++Gt    ek  +fe ++G + + +     +l ++i++ap+ + s ll  +e r++t+
  CCD26053.2 319 VMLVGQAGAGKTFLINEASKYIQCHdsIVKIHLGEQTDAKLLIGTYTSGEKPGTFEWRSGVLTTAVkegrwVLIEDIDKAPTEVLSILLSLLEKRELTI 417
                 688999****************98622667788888888889******************999876666669***********************9998 PP

       AAA_3  94 ..egethklpepflvlat 109
                   +get k  + f +++t
  CCD26053.2 418 psRGETVKAANGFQLIST 435
                 335677777888888887 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.0063
       AAA_3   2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGt 44 
                 vll g  G++kt++v+++ak ++ +++ i +      +d+lG 
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKFMNKTLTVINVSQQTETGDLLGG 715
                 79999************************99999999999874 PP

  == domain 3  score: 5.0 bits;  conditional E-value: 0.054
       AAA_3  64 nllladeinrappktqsalleamee...rqvtv..egethkl..pepflvlatqnPieqeGtyplpeaqldrf 129
                 + ll de+n a++ t  ++ + + e   r + +  +g++ ++  +  f ++a  nP    G   lp     rf
  CCD26053.2 850 EWLLLDEVNLASADTLESISDLLSEsssRSILLseKGDAEPIraHPDFRIFACMNPATDVGKRDLPSGIRSRF 922
                 45999********9987666666551115555411444554411568*******************9999998 PP

  == domain 4  score: 24.7 bits;  conditional E-value: 4.3e-08
       AAA_3    2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanl.....lladeinrappktqsalleameerqvtv 93  
                  vl++g    +kt ++k la++ + +f ri         + lGt + + ++ +++f++G ++  l     ++ de+n ap+ +  al   +++++  +
  CCD26053.2 1105 VLVQGPTSAGKTSMIKYLADITGHKFVRINNHEHTDLQEYLGTYITD-ETGKLSFREGILVEALrkgywIVLDELNLAPTDVLEALNRLLDDNRELF 1200
                  789999999*********************999888899***99876.5789*******9987666666899**********999887777655444 PP

       AAA_3   94 egethkl...pepflvlatqnPieqeGt.yplpeaqldrfl 130 
                    et+++   +  f+++atqnP    G    l  a  +rfl
  CCD26053.2 1201 IPETQEVvhpHPDFMLFATQNPPGLYGGrKVLSRAFRNRFL 1241
                  4444443111556********98876541567888888886 PP

  == domain 5  score: 2.5 bits;  conditional E-value: 0.33
       AAA_3    2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeeke 51  
                  vll g  G +kt++ + l+  ++ ++  +    +   +dilG++   +++
  CCD26053.2 1390 VLLVGETGCGKTTICQILSAFMKKDLITLNAHQNTETGDILGAQRPIRNR 1439
                  799999********************999999999999999987554444 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 4.2
       AAA_3   54 fefkkGpvfa.....nllladeinrappktqsalleame.erq..vtvegethkl...pepflvlatqnPieqeGtyplpeaqldrf 129 
                  fe + Gp+++     n++l dei  a   +   l  ++e er+  ++ +g++ +l   ++ f  l+t nP    G  +l  a  +rf
  CCD26053.2 1499 FEWSDGPLITalktgNFFLLDEISLADDSVLERLNSVLEpERNllLAEKGTSDSLivaKDGFQFLSTMNPGGDYGKKELSPALRNRF 1585
                  555666665422222567888888887777666555554344411344444444433367899****************99999999 PP

  == domain 7  score: 41.6 bits;  conditional E-value: 2.7e-13
       AAA_3    2 vllegvPGlaktllvkalakaldlefkriqftpdllPsdilGtevfeekekefefkkGpvfanl.....lladeinrappktq...salleameerq 90  
                  +lleg PG++kt l+ ala+  + +++ri +       d+ G++   ek+ ef  k  p +  +     +l de+n a+  +     a l+   e  
  CCD26053.2 1771 ILLEGSPGVGKTSLITALADLTGNNLTRINLSEQTDLVDLFGSDAPGEKSGEFVWKDAPFLRAMqqgswILLDEMNLASQSVLeglNACLDHRGEAY 1867
                  79*****************************9999999*********************99765444449********9988622256788889999 PP

       AAA_3   91 vtvegethklpepflvlatqnPieqeGt.yplpeaqldrfl 130 
                  +   +++++ + +flv+a+qnP  q G    lp++ ++rf 
  CCD26053.2 1868 IPELDRSFSCHPNFLVFAAQNPQYQGGGrKGLPKSFVNRFS 1908
                  **********************9887651679***999995 PP

  == domain 8  score: 1.4 bits;  conditional E-value: 0.7
       AAA_3    6 gvPGlaktllvkalakaldlefkriqftpdllPsdilGt 44  
                  g    +k  ++++la++l++e+    + +d+   dilG 
  CCD26053.2 2082 GPSNSGKSAIIRTLANILGTEVGFFSMNSDVDSMDILGG 2120
                  555679******************************995 PP

>> AAA_lid_5  Midasin AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0     3e-32   1.1e-29       1     104 [.     936    1039 ..     936    1041 .. 0.98
   2 ?    2.4   0.0      0.43   1.7e+02      42      93 ..    1631    1683 ..    1598    1689 .. 0.81

  Alignments for each domain:
  == domain 1  score: 102.5 bits;  conditional E-value: 3e-32
   AAA_lid_5    1 DLellvknyLkevsltdqalvtdvvefYlelkklaerkeltdgagqkphfSlRtlsraLsyartilklaglrralyeGfsmsFltqLdsesrkkvek 97  
                  DL  ++++y+ + +++d+ + +d++e+Yle+kkla +++++dg++qkphfS+Rtl+r+L y+ +i+ ++glrr+ly+Gf+msFlt Ld++s++++e 
  CCD26053.2  936 DLLSIIDKYIGKYNVSDEWVGNDIAELYLEAKKLADSNQIVDGSNQKPHFSIRTLTRTLLYVGDIVHIYGLRRSLYDGFCMSFLTLLDQKSESLLEP 1032
                  99*********************************************************************************************** PP

   AAA_lid_5   98 lirkill 104 
                  +i k++l
  CCD26053.2 1033 IIMKYTL 1039
                  **99876 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.43
   AAA_lid_5   42 dgagqkphfSlRtlsraLsyartilkl.aglrralyeGfsmsFltqLdsesrk 93  
                   g+  +  +SlR     +++++ + ++    + a   G+sm F+  L +++++
  CCD26053.2 1631 GGNTTNGIISLRDILAWVQFINSTSEKmGDANAAFAHGASMVFIDALGTNNTA 1683
                  577788899************9998775889999**********999887765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0      0.04        15       1      95 [.     319     412 ..     319     448 .. 0.69
   2 !   18.7   0.1   4.7e-06    0.0018       1      82 [.     673     787 ..     673     809 .. 0.78
   3 !   11.7   0.0    0.0007      0.27       1      36 [.    1105    1140 ..    1105    1224 .. 0.81
   4 !   15.4   0.0     5e-05     0.019       1      36 [.    1390    1425 ..    1390    1461 .. 0.83
   5 !   19.4   0.0   2.9e-06    0.0011       1      67 [.    1771    1845 ..    1771    1889 .. 0.71
   6 ?    7.5   0.0     0.014       5.4       1      30 [.    2078    2109 ..    2078    2137 .. 0.84
   7 ?   -1.7   0.1       9.6   3.6e+03      35      70 ..    4861    4898 ..    4830    4910 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.04
                 EEEESSTTSSHHHHHHHHHHHHT..HEEEEEETTTCSSS.......STTHHHHHHH...HHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelg..vefleisgsellsk.......yvgesekkir...elfkeakekakpsilfiDEidalaksrsgseseeeervvn 87 
                 v+l+G  G GKT l++   k ++   ++++i + e ++        + ge++  ++   +++++a ++     ++i++id+  ++           v++
  CCD26053.2 319 VMLVGQAGAGKTFLINEASKYIQchDSIVKIHLGEQTDAklligtyTSGEKPGTFEwrsGVLTTAVKEG--RWVLIEDIDKAPTE-----------VLS 404
                 689*****************9853367999999988843477777666666666542223444443333..67777777776333...........355 PP

                 HHHHHHHH CS
         AAA  88 qLlteldg 95 
                  Ll+ l++
  CCD26053.2 405 ILLSLLEK 412
                 55555555 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 4.7e-06
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS..............................STTHHHHHHHHHHHHHHHTS..TSEEEEEETG CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellsk..............................yvgesekkirelfkeakeka..kpsilfiDEi 67 
                 vll+G  GtGKT++++++ak ++ ++  i++s+ ++                               +  ++++++++++ ++ +k   k ++ +  E+
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKFMNKTLTVINVSQQTETgdllggykpvnsktiavpiqelfetlfiatFSLKKNERFSKMLHKCFNKGqwKNVVRLWQEA 771
                 79*********************9999999999886678999999999999999999999999999877777777888877776666666688888899 PP

                 GGHHHHH...TTCCCHHH CS
         AAA  68 dalaksr...sgseseee 82 
                 +++a++    +  e+e e
  CCD26053.2 772 YKMAQNIlktD--EDETE 787
                 98888886332..33333 PP

  == domain 3  score: 11.7 bits;  conditional E-value: 0.0007
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSS CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsells 36  
                  vl+ Gp   GKT+++k +a  +g +f++i+ +e ++
  CCD26053.2 1105 VLVQGPTSAGKTSMIKYLADITGHKFVRINNHEHTD 1140
                  7999**************************999883 PP

  == domain 4  score: 15.4 bits;  conditional E-value: 5e-05
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSS CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsells 36  
                  vll+G  G+GKT++++ +   ++ +++++++++ ++
  CCD26053.2 1390 VLLVGETGCGKTTICQILSAFMKKDLITLNAHQNTE 1425
                  79****************************998774 PP

  == domain 5  score: 19.4 bits;  conditional E-value: 2.9e-06
                  EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSS.......STTHHHHHHHHHHHHH...HHTSTSEEEEEETG CS
         AAA    1 vllyGppGtGKTllakavakelgvefleisgsellsk.......yvgesekkirelfkea...kekakpsilfiDEi 67  
                  +ll G pG+GKT+l+ a+a  +g ++ +i++se ++            +ek+ + ++k+a   +++++ s +++DE+
  CCD26053.2 1771 ILLEGSPGVGKTSLITALADLTGNNLTRINLSEQTDLvdlfgsdA--PGEKSGEFVWKDApflRAMQQGSWILLDEM 1845
                  699****************************99884355444221..233334444444422222222266666666 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.014
                  EEEESSTTSSHHHHHHHHHHHHT..HEEEEEE CS
         AAA    1 vllyGppGtGKTllakavakelg..vefleis 30  
                  ++l+Gp   GK+++++ +a+ lg  v f++++
  CCD26053.2 2078 LILVGPSNSGKSAIIRTLANILGteVGFFSMN 2109
                  589******************98334466665 PP

  == domain 7  score: -1.7 bits;  conditional E-value: 9.6
                  S.SSSTTHHHHHHHHHHHHHHHTS.TSEEEEEETGGGH CS
         AAA   35 l.skyvgesekkirelfkeakeka.kpsilfiDEidal 70  
                  + s+ + e  + ++ l+++a+e++   + ++iD i + 
  CCD26053.2 4861 ViSDGICEDHETVQRLVRRARENKiMLVFVIIDGINNS 4898
                  33668889999***********9966688888877655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00067      0.25      10      50 ..     304     342 ..     301     359 .. 0.77
   2 !   17.1   0.3   1.4e-05    0.0055      21      52 ..     667     705 ..     657     883 .. 0.48
   3 !    9.8   0.0    0.0026      0.98      17      63 ..    1095    1138 ..    1089    1169 .. 0.77
   4 ?   -1.2   0.1       5.9   2.3e+03     137     161 ..    1171    1195 ..    1158    1201 .. 0.77
   5 !   16.3   0.0   2.5e-05    0.0097      10     106 ..    1374    1473 ..    1370    1561 .. 0.60
   6 !   11.8   0.0   0.00061      0.23      17      51 ..    1760    1794 ..    1754    1816 .. 0.75
   7 !   11.3   0.0   0.00089      0.34      27      66 ..    2078    2116 ..    2073    2261 .. 0.82
   8 ?   -0.9   0.2         5   1.9e+03      49     116 ..    4618    4679 ..    4604    4713 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00067
      AAA_16  10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralek 50 
                  +L+ + +++  +  e v+l+G++G GK+ l++e+ ++++ 
  CCD26053.2 304 TALRKLAKQLQYN--EPVMLVGQAGAGKTFLINEASKYIQC 342
                 5666666666555..569****************9998865 PP

  == domain 2  score: 17.1 bits;  conditional E-value: 1.4e-05
      AAA_16  21 sgrpelvllsGesGvGKsslvrellralekd.......g 52 
                  + +e vll+Ge G+GK+++v++ ++ ++k+        
  CCD26053.2 667 IQMTEPVLLVGETGTGKTTVVQQMAKFMNKTltvinvsQ 705
                 455688*******************99999843332220 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.0026
      AAA_16   17 ervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdql 63  
                   r++sgr   vl+ G+   GK+s+++ l+  +++++  f+r +++++
  CCD26053.2 1095 VRASSGRRFPVLVQGPTSAGKTSMIKYLA-DITGHK--FVRINNHEH 1138
                  3688888899*****************99.677774..777777666 PP

  == domain 4  score: -1.2 bits;  conditional E-value: 5.9
      AAA_16  137 lvlvlDdlqwadeaslqllaaLlrl 161 
                    +vlD+l  a ++ l++l  Ll++
  CCD26053.2 1171 YWIVLDELNLAPTDVLEALNRLLDD 1195
                  6799**9999999888888888775 PP

  == domain 5  score: 16.3 bits;  conditional E-value: 2.5e-05
      AAA_16   10 eqLlsalervrsgrpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesa.......ipy...salaqalareellrqlldeaesaelea 96  
                  ++L  ++++  ++  e vll+Ge G+GK+++ + l   ++kd   +++ +++q+++        +p    s l ++la+ +++++l+ +  s+++ +
  CCD26053.2 1374 RRLSVLVSKCLQNN-EPVLLVGETGCGKTTICQILSAFMKKD---LITLNAHQNTETgdilgaqRPIrnrSELQNQLAN-TIIKALDMP--STNQCY 1463
                  66666777777776.89***************9999888888...4444444442222344444444554668888844.888888777..334444 PP

      AAA_16   97 wrekleeala 106 
                  + e+l++ ++
  CCD26053.2 1464 DLETLLKLYK 1473
                  4444555555 PP

  == domain 6  score: 11.8 bits;  conditional E-value: 0.00061
      AAA_16   17 ervrsgrp.elvllsGesGvGKsslvrellralekd 51  
                  + vr+ +    +ll G +GvGK+sl+++l+  l+++
  CCD26053.2 1760 RVVRAMQVhKPILLEGSPGVGKTSLITALA-DLTGN 1794
                  444444556789****************99.56655 PP

  == domain 7  score: 11.3 bits;  conditional E-value: 0.00089
      AAA_16   27 vllsGesGvGKsslvrellralekdggiflrgkcdqlesa 66  
                  ++l+G+s +GKs+++r+l++ l ++ + f++ + d  +++
  CCD26053.2 2078 LILVGPSNSGKSAIIRTLANILGTE-VGFFSMNSDVDSMD 2116
                  689****************877777.88888888877555 PP

  == domain 8  score: -0.9 bits;  conditional E-value: 5
      AAA_16   49 ekdggiflrgkcdqlesaipysalaqalareellrqllde..aesaeleawrekleealaavpelagaea 116 
                  ek+gg+f++g+ d++         ++al ++ ll+  ++e  +++   e + e+ eea+++ p+ + +e+
  CCD26053.2 4618 EKNGGVFTAGQEDKF--------DVDALNTDPLLQRRDEEdeLDELMDEIDNETHEEAITELPPRSIEES 4679
                  556899999999999........55566555555555555222222333333333333333333333333 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.26        98     295     327 .]     298     330 ..     269     330 .. 0.84
   2 !   13.9   0.4   5.3e-05      0.02      14      71 ..     652     709 ..     644     718 .. 0.82
   3 !    9.9   0.0   0.00085      0.32      82     171 ..     846     934 ..     825     943 .. 0.80
   4 !   14.8   0.0   2.8e-05     0.011       9      74 ..    1078    1144 ..    1073    1240 .. 0.81
   5 ?   -0.6   0.1       1.3     5e+02      12     327 .]    1367    1401 ..    1332    1427 .. 0.57
   6 ?   -2.5   0.0       5.1   1.9e+03     133     177 ..    1558    1607 ..    1548    1625 .. 0.71
   7 !   14.7   0.0   2.9e-05     0.011      15     327 .]    1751    2089 ..    1748    2089 .. 0.64
   8 ?    2.3   0.0      0.17        67      29      71 ..    2072    2114 ..    2049    2121 .. 0.80
   9 !    6.8   0.0    0.0073       2.8      47     147 ..    2197    2297 ..    2195    2304 .. 0.95

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.26
       AAA_6 295 leekfvekviqlyetlkvrhgvmlvGetgsgKt 327
                 ++ k ++ + +l + l++++ vmlvG++g+gKt
  CCD26053.2 298 PTLKTITALRKLAKQLQYNEPVMLVGQAGAGKT 330
                 5556777888999999****************8 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 5.3e-05
       AAA_6  14 iTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldy 71 
                 iT    r    ++  ++++    + G +gtGKt  v+++ak + k+++v+n+s+q ++
  CCD26053.2 652 ITNHSLRLMEQIAVTIQMTEPVLLVGETGTGKTTVVQQMAKFMNKTLTVINVSQQTET 709
                 5555566666667777788888899****************************99875 PP

  == domain 3  score: 9.9 bits;  conditional E-value: 0.00085
       AAA_6  82 aqsGaWgCfdeFnrielevLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnp.gyagrteLPdnLkalfRpvammvPdlel 171
                 ++ G W  +de n  +++ L  ++  +++  +       + + + + i+ +++++if  mnp +  g+ +LP  +++ f ++ +  Pd ++
  CCD26053.2 846 VRNGEWLLLDEVNLASADTLESISDLLSESSSRSIL--LSEKGDAEPIRAHPDFRIFACMNPaTDVGKRDLPSGIRSRFTEIYVHSPDRDI 934
                 678999999999999999999999888764433332..222346679***************45679*********************875 PP

  == domain 4  score: 14.8 bits;  conditional E-value: 2.8e-05
       AAA_6    9 serLviTpltdrcyltltqAlklklg.gapaGpagtGKtEtvkdLakalakqvvvfncsdqldyksl 74  
                  +++ +iTp   +  + l++A + +     ++Gp+ +GKt  +k La   ++ +v +n +++ d +  
  CCD26053.2 1078 QAHYIITPFVKKNMMNLVRASSGRRFpVLVQGPTSAGKTSMIKYLADITGHKFVRINNHEHTDLQEY 1144
                  67789***************9876551679*****************************99998754 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 1.3
       AAA_6   12 LviTpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnrielevLSvvaqqi 108 
                  +v T    r                                                                                        
  CCD26053.2 1367 VVWTNGLRRL--------------------------------------------------------------------------------------- 1376
                  3333333333....................................................................................... PP

       AAA_6  109 ktiqqalkekkkkfvfegkeiklnksvgifitmnpgyagrteLPdnLkalfRpvammvPdlelIaeimLfseGfkeakelakklvtlykllseqlsk 205 
                                                                                                                   
  CCD26053.2    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

       AAA_6  206 qdhydfglralksvlkaagelkreepeeseeelllralrdvnlpklvaeDvplfkglisdlFpgvelpesdyeeleeaieevlkekklqleekfvek 302 
                                                                                                                   
  CCD26053.2    - -------------------------------------------------------------------------------------------------    -
                  ................................................................................................. PP

       AAA_6  303 viqlyetlkvrhgvmlvGetgsgKt 327 
                   + + ++l+ ++ v+lvGetg+gKt
  CCD26053.2 1377 SVLVSKCLQNNEPVLLVGETGCGKT 1401
                  3344455555566666666666665 PP

  == domain 6  score: -2.5 bits;  conditional E-value: 5.1
       AAA_6  133 ksvgifitmnp.gyagrteLPdnLkalfRpvam....mvPdlelIaeimL 177 
                  + +++  tmnp g  g++eL   L+  f ++ +       d+++I+e  L
  CCD26053.2 1558 DGFQFLSTMNPgGDYGKKELSPALRNRFTEIWVpsmeNFEDVHMIVESRL 1607
                  5567778****55789**********999885421122456666666665 PP

  == domain 7  score: 14.7 bits;  conditional E-value: 2.9e-05
       AAA_6   15 TpltdrcyltltqAlklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldyksl..........gki......fkGlaqsGaWgCfdeFnr 95  
                   p t +  + +++A++++    ++G+ g GKt  +  La   ++ ++ +n s+q d   l          g++      f   +q+G+W+ +de+n 
  CCD26053.2 1751 APTTATNLMRVVRAMQVHKPILLEGSPGVGKTSLITALADLTGNNLTRINLSEQTDLVDLfgsdapgeksGEFvwkdapFLRAMQQGSWILLDEMNL 1847
                  58888899999*******************************************99865522222222222222222336668999********999 PP

       AAA_6   96 ielevLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnpgya..grteLPdnLkalfRpv..ammvPdlelIaeimLfseGfkeakel 188 
                   + +vL      +    +a   ++      +++++ ++++ +f   np+y+  gr+ LP ++   f  v   m++ d  l++   L+ +      e+
  CCD26053.2 1848 ASQSVLEGLNACLDHRGEAYIPEL------DRSFSCHPNFLVFAAQNPQYQggGRKGLPKSFVNRFSVVyvDMLTSDDLLLIAHHLYPN---IDPEV 1935
                  888888777666665555555544......56899***************84469*****99999976422577777777777777764...45678 PP

       AAA_6  189 akklvtlykllseqlskqdh.......ydfglralksvlkaagelkreepeeseeelllralrdvnlpklva.eDvplfkglisdlFpgvelpe... 274 
                   +kl+tl++ l++q+ k++        ++f+lr     lk     k+   +  ee+ ++  ++ +   ++ + +D +  ++li+d+F + ++++   
  CCD26053.2 1936 CSKLITLMSTLERQVVKKKQwgsvgapWEFNLRDTLRWLKLLD--KQ---SICEETDVVDFVNIIIKQRFRSiSDKEHADHLIKDIFGDFTTKDkff 2027
                  8999999999999988776522222224666666555554433..33...33344444445555555555432677778899999998887665332 PP

       AAA_6  275 ...sdyeeleeaieevlkekklqleekfv..ekviqlyet....lkvrhgvmlvGetgsgKt 327 
                      dy ++++ i+      ++ l+e+++  e  i++ye     ++ +  ++lvG++ sgK+
  CCD26053.2 2028 kqdADYIQVNNVIAPRNGLYRYPLSENLIplECNIEIYESalmcINNNWPLILVGPSNSGKS 2089
                  11122333333333222222233333332114456666651111233445677777777775 PP

  == domain 8  score: 2.3 bits;  conditional E-value: 0.17
       AAA_6   29 lklklggapaGpagtGKtEtvkdLakalakqvvvfncsdqldy 71  
                  ++ +    + Gp+  GK+  ++ La+ l++ v  f  + ++d 
  CCD26053.2 2072 INNNWPLILVGPSNSGKSAIIRTLANILGTEVGFFSMNSDVDS 2114
                  5555555678**********************99998888775 PP

  == domain 9  score: 6.8 bits;  conditional E-value: 0.0073
       AAA_6   47 EtvkdLakalakqvvvfncsdqldykslgkifkGlaqsGaWgCfdeFnrielevLSvvaqqiktiqqalkekkkkfvfegkeiklnksvgifitmnp 143 
                  E+  d+ + + k   + n+s++++++    ++   ++ G W  +d+ n  + +vL    + ++t  + l ++ ++ + e + ik ++++++f+t+ p
  CCD26053.2 2197 EALIDINERITKISKINNVSNGVTFEWFDGMLVKAVEKGHWLVLDNANLCSPSVLDRLNSLLETDGTLLINECSEANGEPRVIKPHPNFRLFLTVDP 2293
                  67778999999999*********************************************************************************** PP

       AAA_6  144 gyag 147 
                  +y +
  CCD26053.2 2294 KYGE 2297
                  9965 PP

>> Dynein_heavy  Dynein heavy chain region D6 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.017       6.5      47      97 ..     379     439 ..     351     458 .. 0.76
   2 ?    3.0   0.1      0.26     1e+02       3      41 ..     670     708 ..     668     713 .. 0.91
   3 ?   -1.4   0.0       6.1   2.3e+03      39      57 ..     743     761 ..     727     786 .. 0.85
   4 !   12.1   0.0   0.00041      0.16      46     106 ..     840     920 ..     834     932 .. 0.73
   5 !    9.7   0.0    0.0023      0.89      46      96 ..    1161    1222 ..    1109    1235 .. 0.86
   6 ?    7.1   0.0     0.014       5.4      50      97 ..    1832    1890 ..    1767    1913 .. 0.81
   7 !   25.7   0.0   2.4e-08   9.3e-06      32      98 ..    2213    2295 ..    2187    2312 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.017
                   HHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH................HHTT-EEEEEEES- CS
  Dynein_heavy  47 alekaakegsWvlLqNchla.pswlkeLekileel.........eeklhssfRlwltseps 97 
                   +l++a+keg+Wvl++++  a ++ l+ L ++le+          + k+ + f+l  t   +
    CCD26053.2 379 VLTTAVKEGRWVLIEDIDKApTEVLSILLSLLEKReltipsrgeTVKAANGFQLISTVRVD 439
                   799***************9966677778777775555666665544555577776666655 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.26
                   TS-EEEEE-TT--THHHHHHHHHHTT--EEEEETTSHHH CS
  Dynein_heavy   3 ttPvlfilspgadptesleklakklkklvksvslGqgqe 41 
                   t Pvl++ ++g+  t+ ++++ak ++k+++ + + q+ e
    CCD26053.2 670 TEPVLLVGETGTGKTTVVQQMAKFMNKTLTVINVSQQTE 708
                   68*************************99***9999866 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 6.1
                   HHHHHHHHHHHHHHHHT-E CS
  Dynein_heavy  39 gqeeeaekalekaakegsW 57 
                   +++e+ +k+l+k+ ++g+W
    CCD26053.2 743 KKNERFSKMLHKCFNKGQW 761
                   4677899************ PP

  == domain 4  score: 12.1 bits;  conditional E-value: 0.00041
                   HHHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH.....................HHTT-EEEEEEES-T.....TS-HHHHH CS
  Dynein_heavy  46 kalekaakegsWvlLqNchla.pswlkeLekileel..............eeklhssfRlwltsepsp.....kfPislLq 106
                     l ka+++g+W+lL ++ la ++ l++++++l+e+                ++h++fR++  ++p++     ++P ++  
    CCD26053.2 840 GSLVKAVRNGEWLLLDEVNLAsADTLESISDLLSESssrsillsekgdaePIRAHPDFRIFACMNPATdvgkrDLPSGIRS 920
                   56889****************55567777777665567778888878876556789******9999984444445555555 PP

  == domain 5  score: 9.7 bits;  conditional E-value: 0.0023
                    HHHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH.................HHTT-EEEEEEES CS
  Dynein_heavy   46 kalekaakegsWvlLqNchla.pswlkeLekileel..........eeklhssfRlwltsep 96  
                     +l +a ++g W++L +  la ++ l+ L+++l++             + h++f l+ t +p
    CCD26053.2 1161 GILVEALRKGYWIVLDELNLApTDVLEALNRLLDDNrelfipetqeVVHPHPDFMLFATQNP 1222
                    57889****************778899*****886667888887443445669***999887 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.014
                    HHHHHT-EEEEE-GGG-.CCCHHHHHHH.................HHTT-EEEEEEES- CS
  Dynein_heavy   50 kaakegsWvlLqNchla.pswlkeLekileel..........eeklhssfRlwltseps 97  
                    +a+++gsW+lL ++ la +s l+ L+  l++           + ++h++f ++   +p+
    CCD26053.2 1832 RAMQQGSWILLDEMNLAsQSVLEGLNACLDHRgeayipeldrSFSCHPNFLVFAAQNPQ 1890
                    79***************677799999998755666777777766778888888776665 PP

  == domain 7  score: 25.7 bits;  conditional E-value: 2.4e-08
                    EEEETTSHHHHHHHHHHHHHHHHT-EEEEE-GGG-.CCCHHHHHHH.......................HHTT-EEEEEEES-T CS
  Dynein_heavy   32 ksvslGqgqeeeaekalekaakegsWvlLqNchla.pswlkeLekileel................eeklhssfRlwltsepsp 98  
                    ++vs G   e   + +l ka+++g+W++L N  l+ ps l++L+++le+                   k h++fRl+lt +p+ 
    CCD26053.2 2213 NNVSNGVTFE-WFDGMLVKAVEKGHWLVLDNANLCsPSVLDRLNSLLETDgtllinecseangeprVIKPHPNFRLFLTVDPKY 2295
                    5666666555.6889********************9999*******87557778888888888877566799********9975 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     2e-06   0.00076      10     144 ..     304     439 ..     298     453 .. 0.75
   2 !   16.7   0.1   1.2e-05    0.0046       9      48 ..     657     696 ..     651     713 .. 0.81
   3 ?    7.1   0.0     0.011       4.1      10     121 ..    1090    1197 ..    1084    1220 .. 0.80
   4 !   11.4   0.0   0.00049      0.19       9      51 ..    1374    1413 ..    1368    1427 .. 0.78
   5 ?    5.9   0.0     0.026       9.8      10      78 ..    1756    1823 ..    1749    1868 .. 0.65
   6 ?   -2.0   0.0       6.7   2.6e+03      12      44 ..    2065    2097 ..    2062    2110 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2e-06
                      HHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS.-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHT..TTSEEEEE CS
  Sigma54_activat  10 elleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaai.peelleseLFGhekGaFtGAekekkGlfeka..dgGtlfLD 100
                      ++l++++k  +++ +v+++G+ G+GK++l +   +  + ++ ++v++  ++   ++ll      +++G   G+ + ++G + +a  +g  ++++
       CCD26053.2 304 TALRKLAKQLQYNEPVMLVGQAGAGKTFLINEASKYIQCHD-SIVKIHLGEQtDAKLLIG---TYTSGEKPGTFEWRSGVLTTAvkEGRWVLIE 393
                      4567788888999*****************99999888655.59*****97724444433...345555556667899999988545668999* PP

                      TGGGS-HHHHHHHHHHHHHSEEE..SBTSSSEEE--EEEEEEESS- CS
  Sigma54_activat 101 eigelplelQekLlrvlqegeve..rvGsskeikvdvriiaatned 144
                      +i + p+e+ + Ll +l+++e++    G++ +    +++i++   d
       CCD26053.2 394 DIDKAPTEVLSILLSLLEKRELTipSRGETVKAANGFQLISTVRVD 439
                      ********************97622457777777777777766544 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 1.2e-05
                      HHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTT CS
  Sigma54_activat   9 kelleqikkvaktdlsvlitGesGtGKellaraiheaskr 48 
                       +l+eqi+ +++++ +vl++Ge+GtGK+++ +++ +  ++
       CCD26053.2 657 LRLMEQIAVTIQMTEPVLLVGETGTGKTTVVQQMAKFMNK 696
                      568999999***********************99886653 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.011
                       HHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BEHHHHHT..TTSEEEE CS
  Sigma54_activat   10 elleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekkGlfeka..dgGtlfL 99  
                       ++++ +++    + +vl++G + +GK+ + + + +    + ++fv++n  + ++    +e  G+     tG  + ++G + +a  +g  + L
       CCD26053.2 1090 NMMNLVRASSGRRFPVLVQGPTSAGKTSMIKYLAD---ITGHKFVRINNHEHTD---LQEYLGTYITDETGKLSFREGILVEAlrKGYWIVL 1175
                       5667777788888*************988777655...55689****9876554...35667888888999999999988776434456999 PP

                       ETGGGS-HHHHHHHHHHHHHSE CS
  Sigma54_activat  100 DeigelplelQekLlrvlqege 121 
                       De++  p+++ e L r+l++++
       CCD26053.2 1176 DELNLAPTDVLEALNRLLDDNR 1197
                       9999999999999999999765 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 0.00049
                       HHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS CS
  Sigma54_activat    9 kelleqikkvaktdlsvlitGesGtGKellaraiheaskrkek 51  
                       ++l   ++k+ +++ +vl++Ge+G+GK+++ + + +  k   k
       CCD26053.2 1374 RRLSVLVSKCLQNNEPVLLVGETGCGKTTICQILSAFMK---K 1413
                       5566678899999*****************999876554...3 PP

  == domain 5  score: 5.9 bits;  conditional E-value: 0.026
                       HHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-T..TCHHHHHHEBSSSSS CS
  Sigma54_activat   10 elleqikkvaktdlsvlitGesGtGKellaraiheaskrkekpfvavncaaipe..elleseLFGhekGaF 78  
                       + l ++ ++++ + ++l++G  G+GK+ l +a+ + +    +++ ++n ++ ++  +l+ s+  G ++G F
       CCD26053.2 1756 TNLMRVVRAMQVHKPILLEGSPGVGKTSLITALADLTG---NNLTRINLSEQTDlvDLFGSDAPGEKSGEF 1823
                       5556677888999**************99888776554...555666666553311455666656666655 PP

  == domain 6  score: -2.0 bits;  conditional E-value: 6.7
                       HHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat   12 leqikkvaktdlsvlitGesGtGKellaraihe 44  
                       +e++ ++++++ +++++G s +GK+ + r++ +
       CCD26053.2 2065 YESALMCINNNWPLILVGPSNSGKSAIIRTLAN 2097
                       566777889999*************99988765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0      0.03        12       8      51 ..     319     355 ..     313     408 .. 0.81
   2 !   12.3   0.0    0.0004      0.15       8      53 ..     673     709 ..     670     753 .. 0.85
   3 ?    3.5   0.0      0.21        80       9     118 ..    1106    1195 ..    1099    1205 .. 0.73
   4 !   10.7   0.0    0.0012      0.46       8      51 ..    1390    1424 ..    1385    1549 .. 0.72
   5 ?    6.9   0.0     0.018         7       6      56 ..    1769    1810 ..    1764    1862 .. 0.86
   6 ?    5.2   0.0     0.061        23       8      41 ..    2078    2102 ..    2074    2136 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.03
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst 51 
                 ++++G++G+GKT+l+++  +  +        ++++v++ l ++t
  CCD26053.2 319 VMLVGQAGAGKTFLINEASKYIQC-------HDSIVKIHLGEQT 355
                 689************987765542.......4444455555555 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.0004
      AAA_22   8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstss 53 
                 ++++Ge+GtGKTt+++++++           ++++  ++++++t+ 
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKFM---------NKTLTVINVSQQTET 709
                 589***************9987.........666666666666654 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.21
      AAA_22    9 vvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrs 105 
                  +v G++ +GKT  ++ l++           + ++v+++  + t++++ l     + +         +  ++e +   + +++    +++DE     +
  CCD26053.2 1106 LVQGPTSAGKTSMIKYLADIT---------GHKFVRINNHEHTDLQEYLGTYITDETG--------KLSFREGILVEALRKGY--WIVLDELNLA-P 1182
                  788****************99.........9999999999999777775555444443........34456555555555555..6788887777.7 PP

      AAA_22  106 eealeeLrsllnl 118 
                   ++le L +ll++
  CCD26053.2 1183 TDVLEALNRLLDD 1195
                  7777777666664 PP

  == domain 4  score: 10.7 bits;  conditional E-value: 0.0012
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsst 51  
                  ++++Ge+G+GKTt ++ l             ++++++ ++ + t
  CCD26053.2 1390 VLLVGETGCGKTTICQILSAFM---------KKDLITLNAHQNT 1424
                  689*************998876.........4444444444433 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.018
      AAA_22    6 gilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl 56  
                  + +++ G +G+GKT l+  l++           +  + +++l+++t++ dl
  CCD26053.2 1769 KPILLEGSPGVGKTSLITALADLT---------GNNLTRINLSEQTDLVDL 1810
                  568999***************998.........777777777777766665 PP

  == domain 6  score: 5.2 bits;  conditional E-value: 0.061
      AAA_22    8 lvvtGesGtGKTtllrrlleqldeeakaeeerpe 41  
                  l+++G+s +GK+  +r+l++ l         + e
  CCD26053.2 2078 LILVGPSNSGKSAIIRTLANIL---------GTE 2102
                  799****************988.........444 PP

>> Sigma54_activ_2  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0      0.07        27      12      95 ..     307     412 ..     299     436 .. 0.60
   2 !   18.1   0.1   5.8e-06    0.0022       5      67 ..     654     734 ..     650     758 .. 0.71
   3 ?    2.2   0.0      0.46   1.7e+02      16      47 ..    1097    1128 ..    1087    1160 .. 0.76
   4 !   13.6   0.0   0.00014     0.053      15      49 ..    1381    1415 ..    1371    1467 .. 0.82
   5 ?    4.5   0.0     0.094        36      14      86 ..    1761    1836 ..    1755    1844 .. 0.72
   6 ?    1.0   0.0       1.1   4.2e+02      20      61 ..    2074    2115 ..    2066    2146 .. 0.79
   7 ?   -1.6   0.0         7   2.7e+03      54      93 ..    2857    2905 ..    2845    2915 .. 0.67

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.07
                      HHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H.....................HHHHHHT..TTSEEEEEE-TT-- CS
  Sigma54_activ_2  12 erLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp.....................ldlleqa..kggtLylkdiadls 82 
                      ++L++  q + pv l+G++G+gk++  +  +k  +  ++i++++ + + +                     + +l +a  +g   +++di++ +
       CCD26053.2 307 RKLAKQLQYNEPVMLVGQAGAGKTFLINEASKYIQCHDSIVKIHLGEQ-TdaklligtytsgekpgtfewrSGVLTTAvkEGRWVLIEDIDKAP 399
                      45666668899************9974444443333344443322221.122333555555555555444433343334355556666666666 PP

                      HHHHHHHHHHHHH CS
  Sigma54_activ_2  83 kaeqkeLlellak 95 
                       + ++ Ll ll+k
       CCD26053.2 400 TEVLSILLSLLEK 412
                      6666666666666 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 5.8e-06
                      HHHHHHHHHHHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H..................HHHHHH CS
  Sigma54_activ_2   5 aaiqelkerLeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp..................ldlleq 67 
                      + + +l e++++  q + pv+l+Ge G+gk++v + ++k+  + l + +v ++ +                    ++l+e+
       CCD26053.2 654 NHSLRLMEQIAVTIQMTEPVLLVGETGTGKTTVVQQMAKFMNKTLTVINVSQQTETGdllggykpvnsktiavpiQELFET 734
                      6677999***********************************998888885554322334444445555555555555555 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.46
                       HHHT-SS-EEEEEETT--HHHHHHCC--TTS- CS
  Sigma54_activ_2   16 qaaqsklpvfltGekGsgkelvArlLhknsgp 47  
                       + + + +pv++ G+  +gk+++ ++L++  g 
       CCD26053.2 1097 ASSGRRFPVLVQGPTSAGKTSMIKYLADITGH 1128
                       455789********************998876 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 0.00014
                       HHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE CS
  Sigma54_activ_2   15 eqaaqsklpvfltGekGsgkelvArlLhknsgpwl 49  
                        +  q++ pv+l+Ge G+gk+++ ++L+ +  ++l
       CCD26053.2 1381 SKCLQNNEPVLLVGETGCGKTTICQILSAFMKKDL 1415
                       5566999*********************9998843 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.094
                       HHHHHT-SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-HHHHHHH.T...TTSEEEEEE-TT--HHHH CS
  Sigma54_activ_2   14 LeqaaqsklpvfltGekGsgkelvArlLhknsgpwleifvverlaklpldlleq.a...kggtLylkdiadlskaeq 86  
                       +  a q + p++l G +G gk++   +L++  g++l   ++ +  +   dl+ + a   k g ++ kd + l +++q
       CCD26053.2 1761 VVRAMQVHKPILLEGSPGVGKTSLITALADLTGNNLTRINL-SEQTDLVDLFGSdApgeKSGEFVWKDAPFLRAMQQ 1836
                       5568899************************9997776666.33344555555532333556666666665555555 PP

  == domain 6  score: 1.0 bits;  conditional E-value: 1.1
                       -SS-EEEEEETT--HHHHHHCC--TTS-EE--SSTTHHHH-H CS
  Sigma54_activ_2   20 sklpvfltGekGsgkelvArlLhknsgpwleifvverlaklp 61  
                       ++ p+ l+G+  sgk+ + r+L++  g+ +  f +++++++ 
       CCD26053.2 2074 NNWPLILVGPSNSGKSAIIRTLANILGTEVGFFSMNSDVDSM 2115
                       688********************************9998754 PP

  == domain 7  score: -1.6 bits;  conditional E-value: 7
                       TTHHHH-HHHHHHHT.........TTSEEEEEE-TT--HHHHHHHHHHH CS
  Sigma54_activ_2   54 verlaklpldlleqa.........kggtLylkdiadlskaeqkeLlell 93  
                       +++la+   ++++++         kg tL +kd++ ++      L+++l
       CCD26053.2 2857 MDNLAHVLTSWIKNVitahvpdafKGTTLAIKDLDAMPLYFKNALQQYL 2905
                       555666665555553333444445***********99766555555554 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0    0.0013      0.49      21     119 ..     319     417 ..     305     467 .. 0.59
   2 !   11.8   0.5   0.00038      0.15      21      75 ..     673     726 ..     660     901 .. 0.84
   3 ?    5.3   0.0     0.038        15      17     114 ..    1101    1195 ..    1091    1201 .. 0.78
   4 ?    6.8   0.0     0.013       4.8      14     114 ..    1384    1538 ..    1377    1545 .. 0.66
   5 !    7.2   0.0    0.0097       3.7      21     113 ..    1771    1861 ..    1760    1868 .. 0.73
   6 ?    0.3   0.0       1.3   4.8e+02      16      45 ..    2073    2102 ..    2067    2112 .. 0.83
   7 ?   -2.5   0.2         9   3.4e+03     124     153 ..    4565    4594 ..    4547    4614 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0013
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk.grarlepgtllivDEagmvdtkqlaallkaaekagak 118
                 ++l+G AG+GKt++++++ + ++ +   v +   +++ Ak L  ++ + ++    +  r +  ++++++g+ +++  +  + t+ l  ll+ +ek++ +
  CCD26053.2 319 VMLVGQAGAGKTFLINEASKYIQCHDSIVKIHLGEQTDAKLLI-GTYTSGEKPGTFEWRSGvLTTAVKEGRWVLIEDIDKAPTEVLSILLSLLEKRELT 416
                 789***************9999877644433333333333332.3333344444333333342234555566666666666666666666666666555 PP

      AAA_30 119 v 119
                 +
  CCD26053.2 417 I 417
                 5 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00038
      AAA_30  21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiak 75 
                 ++l+G  GtGKtt+++++++ +++   +vi ++ + +  + L+    ++++tia 
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKFMNKT-LTVINVSQQTETGDLLGGYKPVNSKTIAV 726
                 789*******************977.69999999999999999777788888875 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.038
      AAA_30   17 gdrvavltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgi.eastiakllkrlk..grarlepgtllivDEagmvdtkqlaallk 110 
                  ++  ++++Gp  +GKt ++k l+++  ++         ++    +L+e lg+  ++ + kl  r +    ++l++g  ++ DE  ++ t+ l+al +
  CCD26053.2 1101 RRFPVLVQGPTSAGKTSMIKYLADITGHKFV-----RINNHEHTDLQEYLGTyITDETGKLSFREGilV-EALRKGYWIVLDELNLAPTDVLEALNR 1191
                  34457899**************999887643.....335566678999999658889999998888852.57889999999****999999999988 PP

      AAA_30  111 aaek 114 
                   +++
  CCD26053.2 1192 LLDD 1195
                  8776 PP

  == domain 4  score: 6.8 bits;  conditional E-value: 0.013
      AAA_30   14 ltsgdrvavltGpAGtGKttalkalreaweaag...........grviglAptgkaAkvLaeelgieastiakllkrlk.................. 81  
                  l+++   ++l+G  G GKtt+ + l + ++++            g+++g+    +   +L+++l   a+ti k l+                     
  CCD26053.2 1384 LQNN-EPVLLVGETGCGKTTICQILSAFMKKDLitlnahqntetGDILGAQRPIRNRSELQNQL---ANTIIKALDMPStnqcydletllklyketn 1476
                  4444.47899****************99998853445555555444444444334333444322...233333332222333444444444445777 PP

      AAA_30   82 .............................grarlepgtllivDEagmvdtkqlaallkaaek 114 
                                                 ++l++g+ ++ DE++++d + l++l + +e 
  CCD26053.2 1477 kenvsdedhlkikklqdnlnilfewsdgpLITALKTGNFFLLDEISLADDSVLERLNSVLEP 1538
                  99999999999999999999999999998445788899999999999999999999877665 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.0097
      AAA_30   21 avltGpAGtGKttalkalreaweaaggrviglAptgkaAkvLaeelgieastiakllkrlk...grarlepgtllivDEagmvdtkqlaallkaae 113 
                   +l+G +G GKt +++al+++  ++  + i l+ +    +  +   +++++   +++ + +   +  ++++g+ ++ DE+ +++++ l+ l + ++
  CCD26053.2 1771 ILLEGSPGVGKTSLITALADLTGNN-LTRINLSEQTDLVDLFGS--DAPGEKSGEFVWKDApflR--AMQQGSWILLDEMNLASQSVLEGLNACLD 1861
                  689****************998866.455677888888777774..4788888888855555331..45556888999999988888887766655 PP

  == domain 6  score: 0.3 bits;  conditional E-value: 1.3
      AAA_30   16 sgdrvavltGpAGtGKttalkalreaweaa 45  
                  ++++  +l+Gp  +GK+ ++++l++++ ++
  CCD26053.2 2073 NNNWPLILVGPSNSGKSAIIRTLANILGTE 2102
                  5667789****************9998766 PP

  == domain 7  score: -2.5 bits;  conditional E-value: 9
      AAA_30  124 DerQlasVeaGgvlrdlveaagigtaeLte 153 
                   ++Ql+s+++ ++++d +++++ + +e+++
  CCD26053.2 4565 AQDQLQSIDQDNAIEDDLSEKEDEDIEMKD 4594
                  589*******99999888889999888875 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.026        10       2      47 ..     316     360 ..     315     417 .. 0.75
   2 ?    4.8   0.0     0.069        26       4      42 ..     672     707 ..     670     736 .. 0.81
   3 !   15.9   0.0   2.6e-05      0.01       4      93 ..    1104    1199 ..    1101    1204 .. 0.69
   4 ?    5.8   0.0     0.034        13       2      43 ..    1387    1425 ..    1386    1463 .. 0.72
   5 ?    2.7   0.1      0.31   1.2e+02      32      99 ..    1474    1548 ..    1462    1564 .. 0.73
   6 !    9.5   0.0    0.0025      0.97       2      88 ..    1768    1861 ..    1767    1868 .. 0.67
   7 ?    2.3   0.0      0.41   1.5e+02       4      37 ..    2077    2109 ..    2074    2141 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.026
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla 47 
                 +++++++G   +GKT+l+++  k     ++si+ i l +++d+kl 
  CCD26053.2 316 NEPVMLVGQAGAGKTFLINEASKYIQ-CHDSIVKIHLGEQTDAKLL 360
                 57899*************99975555.99*******9999886654 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.069
      AAA_14   4 ilvitGaRrvGKTtllkqlikellvkkesilyinldder 42 
                 +++++G   +GKTt+++q++k      +    in+ +++
  CCD26053.2 672 PVLLVGETGTGKTTVVQQMAKFMN---KTLTVINVSQQT 707
                 78999999***********96554...777777777655 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 2.6e-05
      AAA_14    4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderd......kkladpe...kllelileklke..ekktylflDEiqevpe.wekalkslvd 88  
                  +++++G+  +GKT ++k l++       +++ in  +++d      + ++d++   ++ e il    e  +k ++++lDE   +p+ + +al++l+d
  CCD26053.2 1104 PVLVQGPTSAGKTSMIKYLADITG---HKFVRINNHEHTDlqeylgTYITDETgklSFREGILV---EalRKGYWIVLDELNLAPTdVLEALNRLLD 1194
                  789*************99996655...8999998887777333322111122132233333333...14568999********985499******** PP

      AAA_14   89 egknl 93  
                  ++++l
  CCD26053.2 1195 DNREL 1199
                  99775 PP

  == domain 4  score: 5.8 bits;  conditional E-value: 0.034
      AAA_14    2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderd 43  
                  +++++++G   +GKTt++ q+++  +  k++ + +n  ++++
  CCD26053.2 1387 NEPVLLVGETGCGKTTIC-QILSAFM--KKDLITLNAHQNTE 1425
                  7899*************8.5555555..78888888877666 PP

  == domain 5  score: 2.7 bits;  conditional E-value: 0.31
      AAA_14   32 silyinldderdkkladpekllelileklke......ekktylflDEiqevpe.wekalkslvdegknldvivtG 99  
                  ++   n+ de+  k+++ +++l++++e   +      +  ++++lDEi+ +++ + + l+s+++ ++nl +   G
  CCD26053.2 1474 ETNKENVSDEDHLKIKKLQDNLNILFEWSDGplitalKTGNFFLLDEISLADDsVLERLNSVLEPERNLLLAEKG 1548
                  44555777888888888888899999983335888898999********99763667788887776676666555 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.0025
      AAA_14    2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderd...........kkladpekllelileklke.....ekktylflDEiqevpe.wek 81  
                  +k+++++G   vGKT l+  l++      ++   inl +++d           +      k  e++ +   +     ++ ++++lDE+  +++ + +
  CCD26053.2 1768 HKPILLEGSPGVGKTSLITALADLTG---NNLTRINLSEQTDlvdlfgsdapgE------KSGEFVWKD-APflramQQGSWILLDEMNLASQsVLE 1854
                  5899*****************96555...9*********999555543332221......223333333.113334568999*****9987542555 PP

      AAA_14   82 alkslvd 88  
                   l+ ++d
  CCD26053.2 1855 GLNACLD 1861
                  6666666 PP

  == domain 7  score: 2.3 bits;  conditional E-value: 0.41
      AAA_14    4 ilvitGaRrvGKTtllkqlikellvkkesilyin 37  
                  +l+++G+  +GK+ ++++l++ l  ++  ++ +n
  CCD26053.2 2077 PLILVGPSNSGKSAIIRTLANILG-TEVGFFSMN 2109
                  799****************96555.444444444 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00071      0.27       5      45 ..     304     342 ..     300     348 .. 0.76
   2 !   13.7   0.1   0.00012     0.046      10      46 ..     659     697 ..     650     705 .. 0.74
   3 ?    6.5   0.0      0.02       7.7      21      49 ..    1099    1134 ..    1074    1148 .. 0.74
   4 !    7.8   0.0    0.0081       3.1      18      42 ..    1384    1410 ..    1370    1418 .. 0.74
   5 ?    7.3   0.0     0.012       4.4      15      44 ..    1759    1793 ..    1745    1800 .. 0.71
   6 ?   -0.5   0.0         3   1.1e+03      22      46 ..    2078    2102 ..    2061    2110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00071
                 HHHHHHHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHTT- CS
        TsaE   5 eetealgkklakalgdvilLeGdLGaGKTtlvrglakalgv 45 
                 +++++l+k+l+   ++ ++L G+ GaGKT l+ +  k +++
  CCD26053.2 304 TALRKLAKQLQY--NEPVMLVGQAGAGKTFLINEASKYIQC 342
                 456666666654..888***************998887766 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 0.00012
                 HHHHHHHCH..TEEEEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE  10 lgkklakal..gdvilLeGdLGaGKTtlvrglakalgve 46 
                 l +++a ++  ++ +lL G+ G+GKTt v+++ak ++ +
  CCD26053.2 659 LMEQIAVTIqmTEPVLLVGETGTGKTTVVQQMAKFMNKT 697
                 44445444433556*******************988654 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.02
                  E.....EEEEESTTSSHHHHHHHHHHHTT--..--- CS
        TsaE   21 v.....ilLeGdLGaGKTtlvrglakalgve..evk 49  
                        +l +G+  aGKT +++ la   g++  +++
  CCD26053.2 1099 SgrrfpVLVQGPTSAGKTSMIKYLADITGHKfvRIN 1134
                  033456999*****************9999866666 PP

  == domain 4  score: 7.8 bits;  conditional E-value: 0.0081
                  H..TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE   18 l..gdvilLeGdLGaGKTtlvrglaka 42  
                  l  ++ +lL G+ G+GKTt+++ l + 
  CCD26053.2 1384 LqnNEPVLLVGETGCGKTTICQILSAF 1410
                  233556***************988765 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.012
                  HHCH.....TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE   15 akal.....gdvilLeGdLGaGKTtlvrglakalg 44  
                   +++     ++ ilLeG  G+GKT l+ +la   g
  CCD26053.2 1759 MRVVramqvHKPILLEGSPGVGKTSLITALADLTG 1793
                  333322223555****************9998765 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 3
                  EEEEESTTSSHHHHHHHHHHHTT-- CS
        TsaE   22 ilLeGdLGaGKTtlvrglakalgve 46  
                  ++L G+  +GK++++r la+ lg e
  CCD26053.2 2078 LILVGPSNSGKSAIIRTLANILGTE 2102
                  8999****************99875 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.084        32     120     162 ..     307     348 ..     283     351 .. 0.85
   2 !   11.1   0.5    0.0004      0.15     119     164 ..     660     704 ..     621     735 .. 0.72
   3 !   12.5   0.0   0.00015     0.056     104     151 ..    1077    1124 ..    1051    1168 .. 0.82
   4 !   10.8   0.1   0.00048      0.18      99     156 ..    1357    1414 ..    1326    1427 .. 0.76
   5 ?    3.1   0.0      0.11        40     115     162 ..    1755    1801 ..    1740    1812 .. 0.79
   6 ?    0.8   0.0      0.56   2.1e+02     128     196 ..    2074    2145 ..    2059    2147 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.084
       T2SSE 120 evlrkavrerglilvsGgTgsGKttllyallkeinksderivt 162
                 + l+k ++ +  +++ G  g GKt l++ + k+i+ + + iv 
  CCD26053.2 307 RKLAKQLQYNEPVMLVGQAGAGKTFLINEASKYIQCH-DSIVK 348
                 4466666778889999******************999.77776 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0004
       T2SSE 119 aevlrkavrerglilvsGgTgsGKttllyallkeinksderivtvE 164
                  e ++  ++    +l+ G Tg+GKtt++  + k++nk+   ++ v 
  CCD26053.2 660 MEQIAVTIQMTEPVLLVGETGTGKTTVVQQMAKFMNKT-LTVINVS 704
                 333445556679999*********************99.6666555 PP

  == domain 3  score: 12.5 bits;  conditional E-value: 0.00015
       T2SSE  104 tlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallk 151 
                  + +++++++ +k+++ +++r++  +r  +lv G+T+ GKt ++  l  
  CCD26053.2 1077 EQAHYIITPFVKKNMMNLVRASSGRRFPVLVQGPTSAGKTSMIKYLAD 1124
                  456899999999**********99****************98865544 PP

  == domain 4  score: 10.8 bits;  conditional E-value: 0.00048
       T2SSE   99 sakeltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinks 156 
                  ++k+l+l+d ++  +   +++ +++k ++++  +l+ G Tg GKtt+  +l ++++k+
  CCD26053.2 1357 ENKSLQLQDSVVWTNGLRRLSVLVSKCLQNNEPVLLVGETGCGKTTICQILSAFMKKD 1414
                  344555555555555559999999*************************999999887 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.11
       T2SSE  115 kekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivt 162 
                  + ++ +v+r+  + ++ il+ G  g GKt l+ al     ++  ri +
  CCD26053.2 1755 ATNLMRVVRAM-QVHKPILLEGSPGVGKTSLITALADLTGNNLTRINL 1801
                  55666777766.9****************9999988776666666655 PP

  == domain 6  score: 0.8 bits;  conditional E-value: 0.56
       T2SSE  128 erglilvsGgTgsGKttllyallkeinksderivtvEDpvEiql.eganqvqlnak..kakvtfadllraaL 196 
                  ++  +++ G+  sGK+ ++ +l +++ ++   + +  D   +++  g +qv +  k     ++++d lr++L
  CCD26053.2 2074 NNWPLILVGPSNSGKSAIIRTLANILGTEVGFFSMNSDVDSMDIlGGYEQVDITRKisYIVNDLKDILRSLL 2145
                  55668999******************9997777777777777765788888888887777788888888876 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.1e-05     0.012      14      50 ..     314     350 ..     303     361 .. 0.86
   2 ?    6.3   0.1     0.014       5.3      19      50 ..     673     704 ..     658     707 .. 0.85
   3 ?    2.6   0.0      0.18        69      19      51 ..    1105    1135 ..    1093    1154 .. 0.85
   4 !    7.3   0.0    0.0068       2.6      19      51 ..    1390    1420 ..    1380    1424 .. 0.85
   5 ?    6.1   0.0     0.016         6      18      50 ..    1770    1800 ..    1758    1805 .. 0.83
   6 ?   -1.9   0.0       4.4   1.7e+03      20      41 ..    2079    2100 ..    2077    2111 .. 0.81
   7 ?   -0.7   0.0       1.8   7.1e+02      31      64 ..    2625    2659 ..    2624    2668 .. 0.86
   8 ?   -2.6   0.0       7.1   2.7e+03      53      77 ..    3205    3232 ..    3203    3241 .. 0.72
   9 ?   -0.7   0.1       1.9   7.4e+02      45      75 ..    4505    4535 ..    4494    4541 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.1e-05
  Zeta_toxin  14 erPklillgGqpGAGKselaellkdelerqgnvvrld 50 
                 ++   ++l+Gq GAGK+ l++++ ++++ ++++v++ 
  CCD26053.2 314 QYNEPVMLVGQAGAGKTFLINEASKYIQCHDSIVKIH 350
                 55556899**************************996 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.014
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvvrld 50 
                 +ll+G +G GK+++ + +++ ++++  v+ ++
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKFMNKTLTVINVS 704
                 799******************98888887775 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.18
  Zeta_toxin   19 illgGqpGAGKselaellkdelerqgnvvrldp 51  
                  +l+ G + AGK++++++l+d +  + ++vr++ 
  CCD26053.2 1105 VLVQGPTSAGKTSMIKYLADIT--GHKFVRINN 1135
                  7899****************98..999999986 PP

  == domain 4  score: 7.3 bits;  conditional E-value: 0.0068
  Zeta_toxin   19 illgGqpGAGKselaellkdelerqgnvvrldp 51  
                  +ll+G +G+GK+++ + l + +  +++ ++l++
  CCD26053.2 1390 VLLVGETGCGKTTICQILSAFM--KKDLITLNA 1420
                  799**************99999..788888875 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.016
  Zeta_toxin   18 lillgGqpGAGKselaellkdelerqgnvvrld 50  
                   ill G+pG GK++l+++l+d +  ++n  r++
  CCD26053.2 1770 PILLEGSPGVGKTSLITALADLT--GNNLTRIN 1800
                  5899***************9987..66666665 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 4.4
  Zeta_toxin   20 llgGqpGAGKselaellkdele 41  
                  +l+G + +GKs++++ l++ l+
  CCD26053.2 2079 ILVGPSNSGKSAIIRTLANILG 2100
                  7899999********9988765 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 1.8
  Zeta_toxin   31 elaellkdele.rqgnvvrldpDdlRelhPeyeei 64  
                   +ae++++ ++ +qg+ +++  D++R+ +P  ee+
  CCD26053.2 2625 VVAEEFDNTMHlNQGQSITILWDTFRKKYPYNEEC 2659
                  5788899999999*****************88887 PP

  == domain 8  score: -2.6 bits;  conditional E-value: 7.1
  Zeta_toxin   53 dlRelhPeyeeilk...adpkkaseltq 77  
                  d+++++P+ye+ l    +d+++a+e+ +
  CCD26053.2 3205 DFKKMFPDYEDTLTlggDDKATAVEQLH 3232
                  89*********99855455566666655 PP

  == domain 9  score: -0.7 bits;  conditional E-value: 1.9
  Zeta_toxin   45 nvvrldpDdlRelhPeyeeilkadpkkasel 75  
                  ++++  +D+lR++h + +ei +a  +++ e 
  CCD26053.2 4505 EALKQLGDSLRQYHKRHQEIKEASNDENQED 4535
                  5555668************999988877665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00068      0.26      84     121 ..     300     338 ..     281     357 .. 0.81
   2 !   13.2   0.3   0.00016     0.061      71     137 ..     641     710 ..     632     712 .. 0.86
   3 ?    0.2   0.0       1.7   6.3e+02      89     124 ..    1090    1127 ..    1068    1141 .. 0.66
   4 ?    6.9   0.1     0.014       5.2      65     122 ..    1353    1410 ..    1328    1429 .. 0.63
   5 !    7.8   0.0    0.0075       2.9      88     122 ..    1756    1791 ..    1740    1806 .. 0.71
   6 ?    2.9   0.0      0.25        94     102     131 ..    2078    2107 ..    2064    2112 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00068
                  TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase  84 aktkegleelkellkd.ktsvlvGqSGvGKStLinallp 121
                   kt ++l++l+++l+  + ++lvGq G+GK+ Lin+   
   CCD26053.2 300 LKTITALRKLAKQLQYnEPVMLVGQAGAGKTFLINEASK 338
                  456688999*****987999***************8655 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.00016
                  HHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCT..T-----S--------- CS
  RsgA_GTPase  71 elealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallp..elelktgevseklgrG 137
                  + ++++ + +++ +++ + +e+++  ++  + ++lvG++G GK+t++ +++   +++l + +vs+++++G
   CCD26053.2 641 QKKSANSTAFAITNHSLRLMEQIAVTIQMtEPVLLVGETGTGKTTVVQQMAKfmNKTLTVINVSQQTETG 710
                  5566677788888888899999999999989999****************99777899999***999988 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 1.7
                   THHHHHHHCTT.SEEEEE.CSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase   89 gleelkellkd.ktsvlv.GqSGvGKStLinallpele 124 
                   ++ +l ++ ++ ++ vlv G++ +GK+++i+ l+  + 
   CCD26053.2 1090 NMMNLVRASSGrRFPVLVqGPTSAGKTSMIKYLADITG 1127
                   4444444444435555544************9987554 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.014
                   HHHHHHHHHHTTSEEEE--TTTHTTHHHH.HHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase   65 leelkeelealgyevllvsaktkegleel.kellkd.ktsvlvGqSGvGKStLinallpe 122 
                   +++l+++  +l+ +v+ ++    + l+ l ++ l++ + ++lvG++G GK+t+   l   
   CCD26053.2 1353 YTNLENKSLQLQDSVVWTNGL--RRLSVLvSKCLQNnEPVLLVGETGCGKTTICQILSAF 1410
                   445555555555555555444..344444144566668899************9998773 PP

  == domain 5  score: 7.8 bits;  conditional E-value: 0.0075
                   TTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase   88 egleelkellkd.ktsvlvGqSGvGKStLinallpe 122 
                   ++l ++ ++++  k ++l G+ GvGK++Li al+  
   CCD26053.2 1756 TNLMRVVRAMQVhKPILLEGSPGVGKTSLITALADL 1791
                   4455555555554888999************99874 PP

  == domain 6  score: 2.9 bits;  conditional E-value: 0.25
                   EEEECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase  102 svlvGqSGvGKStLinallpelelktgevs 131 
                    +lvG+S  GKS++i +l++ l +++g  s
   CCD26053.2 2078 LILVGPSNSGKSAIIRTLANILGTEVGFFS 2107
                   689***************998777776555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.29   1.1e+02       2      18 ..     319     335 ..     319     348 .. 0.89
   2 !   13.2   0.1    0.0002     0.075       2     123 ..     673     798 ..     673     811 .. 0.75
   3 ?    2.1   0.0      0.52     2e+02       2      82 ..    1105    1182 ..    1105    1206 .. 0.69
   4 ?    2.7   0.0      0.35   1.3e+02       2      24 ..    1390    1412 ..    1390    1459 .. 0.54
   5 ?    5.6   0.0     0.043        16       2      28 ..    1771    1799 ..    1771    1858 .. 0.77
   6 ?    3.9   0.0      0.15        57       3      32 ..    2079    2112 ..    2078    2266 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.29
      AAA_33   2 vllvGlpGsGKstlaer 18 
                 v+lvG +G+GK++l+ +
  CCD26053.2 319 VMLVGQAGAGKTFLINE 335
                 89***********9865 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 0.0002
      AAA_33   2 vllvGlpGsGKstlaerllkklg....avllssdtlrrrlfg..tdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsrrerarflklarr 94 
                 vllvG  G+GK+t++++++k       ++ +s+ t+   l g  + ++skt    + + +     +++  +  ++++ +l    +++ +++++++l+++
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKFMNktltVINVSQQTETGDLLGgyKPVNSKTIAVPIQELFETLFIATFSLKKNERFSKMLHKC-FNKGQWKNVVRLWQE 770
                 799***************654444555888*****999999966666666655556666666666777777788888888775.567899999999985 PP

      AAA_33  95 lgvpvrivvvetdeetlkeRlakRaangd 123
                 + ++ +  +++tde++ ++ ++k++++++
  CCD26053.2 771 A-YKMAQNILKTDEDETEDTTEKKKQKKR 798
                 5.488999999999999999999888653 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.52
      AAA_33    2 vllvGlpGsGKstlaerllkklg..avllssdtlrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvildatnlsr 82  
                  vl+ G+  +GK+  ++ l+  +g  +v+++  + ++ l +   + +td    + +l  + ++++ +al++g+ ++ld  nl +
  CCD26053.2 1105 VLVQGPTSAGKTSMIKYLADITGhkFVRINNHE-HTDLQEYLGTYITD---ETGKLS-FREGILVEALRKGYWIVLDELNLAP 1182
                  6889**************998888899998775.66666655544443...222222.2245556667777777777666655 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.35
      AAA_33    2 vllvGlpGsGKstlaerllkklg 24  
                  vllvG  G+GK+t  + l +  +
  CCD26053.2 1390 VLLVGETGCGKTTICQILSAFMK 1412
                  799**********9987743333 PP

  == domain 5  score: 5.6 bits;  conditional E-value: 0.043
      AAA_33    2 vllvGlpGsGKstlaerllkklg..avll 28  
                  +ll G pG+GK+ l++ l+  +g   +++
  CCD26053.2 1771 ILLEGSPGVGKTSLITALADLTGnnLTRI 1799
                  6899*************996555664443 PP

  == domain 6  score: 3.9 bits;  conditional E-value: 0.15
      AAA_33    3 llvGlpGsGKstlaerllkklg....avllssdt 32  
                  +lvG++ sGKs  ++ l++ lg    ++  +sd+
  CCD26053.2 2079 ILVGPSNSGKSAIIRTLANILGtevgFFSMNSDV 2112
                  89***************99998666555566666 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.017       6.4      18      50 ..     302     333 ..     293     402 .. 0.88
   2 !    8.9   0.0    0.0027         1      30      56 ..     667     693 ..     635     706 .. 0.86
   3 !   12.3   0.0   0.00024      0.09      19      60 ..    1373    1414 ..    1359    1492 .. 0.79
   4 ?    3.8   0.0     0.095        36      33      54 ..    1768    1789 ..    1746    1795 .. 0.86
   5 ?   -0.6   0.0       2.2   8.6e+02      32      53 ..    2074    2095 ..    2070    2107 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
      AAA_25  18 pppprrwlvkgllpagelallaGapgtGKttla 50 
                 +++ +r+l k l   +e ++l+G+ g+GKt+l 
  CCD26053.2 302 TITALRKLAKQL-QYNEPVMLVGQAGAGKTFLI 333
                 678889999998.789**************985 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0027
      AAA_25  30 lpagelallaGapgtGKttlaldlala 56 
                 + + e +ll+G +gtGKtt++ ++a  
  CCD26053.2 667 IQMTEPVLLVGETGTGKTTVVQQMAKF 693
                 5677899****************9965 PP

  == domain 3  score: 12.3 bits;  conditional E-value: 0.00024
      AAA_25   19 ppprrwlvkgllpagelallaGapgtGKttlaldlalavatG 60  
                  +++++ lv  +l  +e +ll+G +g+GKtt++  l++ + ++
  CCD26053.2 1373 LRRLSVLVSKCLQNNEPVLLVGETGCGKTTICQILSAFMKKD 1414
                  5788999************************99999887655 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.095
      AAA_25   33 gelallaGapgtGKttlaldla 54  
                  ++ +ll G pg+GKt l + la
  CCD26053.2 1768 HKPILLEGSPGVGKTSLITALA 1789
                  67899************99997 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 2.2
      AAA_25   32 agelallaGapgtGKttlaldl 53  
                   ++  +l+G++ +GK+++   l
  CCD26053.2 2074 NNWPLILVGPSNSGKSAIIRTL 2095
                  567789**********987655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.58   2.2e+02      23      39 ..     317     333 ..     308     340 .. 0.82
   2 !    8.3   0.0    0.0049       1.9      17      40 ..     665     688 ..     659     705 .. 0.81
   3 ?   -0.5   0.0       2.8   1.1e+03      25      39 ..    1105    1119 ..    1096    1134 .. 0.86
   4 ?    5.3   0.0     0.042        16      23      39 ..    1388    1404 ..    1381    1420 .. 0.82
   5 ?    5.5   0.0     0.037        14      23      54 ..    1769    1799 ..    1759    1805 .. 0.74
   6 !    7.7   0.0    0.0078         3      24      46 ..    2077    2099 ..    2061    2106 .. 0.79

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.58
      AAA_29  23 gatlltGpsGsGKSTll 39 
                 + ++l+G+ G+GK+ l+
  CCD26053.2 317 EPVMLVGQAGAGKTFLI 333
                 4589*********9887 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0049
      AAA_29  17 ieidlkgatlltGpsGsGKSTllD 40 
                 ++i++ + +ll+G++G+GK+T++ 
  CCD26053.2 665 VTIQMTEPVLLVGETGTGKTTVVQ 688
                 556666789************985 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 2.8
      AAA_29   25 tlltGpsGsGKSTll 39  
                  +l+ Gp+ +GK++++
  CCD26053.2 1105 VLVQGPTSAGKTSMI 1119
                  6999********998 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.042
      AAA_29   23 gatlltGpsGsGKSTll 39  
                  + +ll+G++G GK+T+ 
  CCD26053.2 1388 EPVLLVGETGCGKTTIC 1404
                  468************95 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.037
      AAA_29   23 gatlltGpsGsGKSTllDAiqalLvpakkvrf 54  
                    +ll G  G+GK++l+ A++ l ++++ +r 
  CCD26053.2 1769 KPILLEGSPGVGKTSLITALADL-TGNNLTRI 1799
                  4589*************998764.45544555 PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.0078
      AAA_29   24 atlltGpsGsGKSTllDAiqalL 46  
                    +l+Gps sGKS+++  ++ +L
  CCD26053.2 2077 PLILVGPSNSGKSAIIRTLANIL 2099
                  5789***********98777776 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.076        29       9      35 ..     315     341 ..     307     365 .. 0.83
   2 !   12.0   0.0   0.00052       0.2       4      40 ..     664     700 ..     661     813 .. 0.85
   3 ?    6.1   0.0     0.034        13       9      78 ..    1386    1478 ..    1380    1545 .. 0.57
   4 !    7.9   0.0    0.0094       3.6       7      33 ..    1765    1791 ..    1759    1801 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.076
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallv 35 
                  ++++++++ +G GKT +++++ ++++
  CCD26053.2 315 YNEPVMLVGQAGAGKTFLINEASKYIQ 341
                 5789999************99887765 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00052
      AAA_19   4 avealkekvllvtaGpGtGKTrvlkhivallvelggv 40 
                 av+    +++l+++  GtGKT+v++++ + ++++ +v
  CCD26053.2 664 AVTIQMTEPVLLVGETGTGKTTVVQQMAKFMNKTLTV 700
                 66556678999******************99998766 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.034
      AAA_19    9 kekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgr...AakelrerlaalgaeatTiHrl.al.....................l 78  
                  +++++l+++  G+GKT++ +   a +++       +    + tg    A + +r+r +  ++ a+Ti +   +                      
  CCD26053.2 1386 NNEPVLLVGETGCGKTTICQILSAFMKKDLIT--LNAHQNTETGDilgAQRPIRNRSELQNQLANTIIKAlDMpstnqcydletllklyketnkE 1478
                  6899*************999888887766532..3334444444222255556666655555577766440224444443333333333333330 PP

  == domain 4  score: 7.9 bits;  conditional E-value: 0.0094
      AAA_19    7 alkekvllvtaGpGtGKTrvlkhival 33  
                     +k++l+ + pG GKT ++++   l
  CCD26053.2 1765 MQVHKPILLEGSPGVGKTSLITALADL 1791
                  46789****************987655 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.79     3e+02      25      41 ..     319     335 ..     312     344 .. 0.86
   2 ?    4.6   0.0     0.049        19      22      48 ..     670     696 ..     656     713 .. 0.80
   3 ?   -1.9   0.0       4.6   1.7e+03      23      45 ..    1103    1125 ..    1089    1143 .. 0.81
   4 ?    2.7   0.0      0.18        68     110     158 ..    1173    1222 ..    1154    1231 .. 0.81
   5 ?    4.5   0.0     0.051        19      25      47 ..    1390    1412 ..    1379    1445 .. 0.75
   6 ?   -2.7   0.0       8.4   3.2e+03     110     158 ..    1516    1568 ..    1507    1576 .. 0.63
   7 ?    6.5   0.0     0.013       4.8      22      48 ..    1767    1794 ..    1750    1834 .. 0.72
   8 ?    0.2   0.0       1.1   4.2e+02     110     160 ..    1840    1891 ..    1832    1899 .. 0.88
   9 ?    3.7   0.0      0.09        35      23      47 ..    2076    2100 ..    2065    2110 .. 0.88
  10 ?   -2.0   0.0         5   1.9e+03     121     191 ..    3507    3579 ..    3504    3582 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.79
  Mg_chelatase  25 lllvGppGsGKtmlakr 41 
                   ++lvG +G+GKt l++ 
    CCD26053.2 319 VMLVGQAGAGKTFLINE 335
                   79**********99875 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.049
  Mg_chelatase  22 gHnlllvGppGsGKtmlakrlpsllpp 48 
                   +  +llvG  G+GKt + +++++ + +
    CCD26053.2 670 TEPVLLVGETGTGKTTVVQQMAKFMNK 696
                   5679*************9999887754 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 4.6
  Mg_chelatase   23 HnlllvGppGsGKtmlakrlpsl 45  
                      +l+ Gp  +GKt ++k l+ +
    CCD26053.2 1103 FPVLVQGPTSAGKTSMIKYLADI 1125
                    468999**********9999887 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.18
  Mg_chelatase  110 LfLDElpefkrkvlevLRePledg.evtisrakakvefparfqlvaamNp 158 
                    ++LDEl    ++vle+L + l+d+ e+ i  +++ v+   +f+l a+ Np
    CCD26053.2 1173 IVLDELNLAPTDVLEALNRLLDDNrELFIPETQEVVHPHPDFMLFATQNP 1222
                    78*******************98615666666666665679********9 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.051
  Mg_chelatase   25 lllvGppGsGKtmlakrlpsllp 47  
                    +llvG  G+GKt + + l++ + 
    CCD26053.2 1390 VLLVGETGCGKTTICQILSAFMK 1412
                    89************999888764 PP

  == domain 6  score: -2.7 bits;  conditional E-value: 8.4
  Mg_chelatase  110 LfLDElpefkrkvlevLRePledgevti..srakakvefpar..fqlvaamNp 158 
                    ++LDE++  + +vle L + le ++  +  ++ +++    a+  fq++ +mNp
    CCD26053.2 1516 FLLDEISLADDSVLERLNSVLEPERNLLlaEKGTSDSLIVAKdgFQFLSTMNP 1568
                    458**************999996553330123333333333223677777776 PP

  == domain 7  score: 6.5 bits;  conditional E-value: 0.013
  Mg_chelatase   22 gHn.lllvGppGsGKtmlakrlpsllpp 48  
                     H+ +ll G+pG GKt l+++l+ l  +
    CCD26053.2 1767 VHKpILLEGSPGVGKTSLITALADLTGN 1794
                    444399***************9998653 PP

  == domain 8  score: 0.2 bits;  conditional E-value: 1.1
  Mg_chelatase  110 LfLDElpefkrkvlevLRePled.gevtisrakakvefparfqlvaamNpcp 160 
                    ++LDE+   +++vle L   l++ ge  i   +++++   +f + aa Np  
    CCD26053.2 1840 ILLDEMNLASQSVLEGLNACLDHrGEAYIPELDRSFSCHPNFLVFAAQNPQY 1891
                    689******************8637999********9999*********965 PP

  == domain 9  score: 3.7 bits;  conditional E-value: 0.09
  Mg_chelatase   23 HnlllvGppGsGKtmlakrlpsllp 47  
                      l+lvGp+ sGK+ +++ l+++l 
    CCD26053.2 2076 WPLILVGPSNSGKSAIIRTLANILG 2100
                    569*******************996 PP

  == domain 10  score: -2.0 bits;  conditional E-value: 5
  Mg_chelatase  121 kvlevLRePledgevtisrakakvefp.arfqlvaamNpcpcgklkdkekectcs.ekeierYlsklsgplld 191 
                    +v+   R+ l + + +isr+++++e + +++ l+a+        lk+++++ + s  k +++Y++ +sg +l 
    CCD26053.2 3507 NVITFYRQFLPTIQEQISRSRKTLEKDiSEVILLASWKDVNVDALKQSSRRSHNSlYKYVRKYRDLISGSVLS 3579
                    5677789999999999****999977636788999999999999999998888774678999******99886 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0071       2.7      33      77 ..     670     714 ..     653     732 .. 0.83
   2 ?    1.3   0.0      0.66   2.5e+02       8      58 ..    1080    1127 ..    1075    1137 .. 0.82
   3 !   10.3   0.0    0.0012      0.44      23      76 ..    1380    1430 ..    1361    1442 .. 0.77
   4 ?   -1.1   0.0       3.7   1.4e+03      78     123 ..    1506    1551 ..    1504    1586 .. 0.82
   5 ?    7.1   0.0     0.011       4.1      35      62 ..    1770    1797 ..    1756    1813 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0071
      RuvB_N  33 ldhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdlaa 77 
                  + vll+G  G Gktt+ + +ak ++ +l +       ++gdl +
  CCD26053.2 670 TEPVLLVGETGTGKTTVVQQMAKFMNKTLTVINVSQQTETGDLLG 714
                 5679************************99998888888888876 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.66
      RuvB_N    8 eyigqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelg 58  
                  +yi    vk+++  +++a+  r+ +   vl++Gp   Gkt++ k +a+  g
  CCD26053.2 1080 HYIITPFVKKNMMNLVRASSGRRFP---VLVQGPTSAGKTSMIKYLADITG 1127
                  6777777899999999999988875...8*************999887655 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.0012
      RuvB_N   23 ieaakkreealdhvllyGpPGlGkttlakiiakelgvklkitsgPvlekagdla 76  
                  ++ + + +   + vll+G  G Gktt+++i+++ ++ +l +  +    ++gd+ 
  CCD26053.2 1380 VSKCLQNN---EPVLLVGETGCGKTTICQILSAFMKKDLITLNAHQNTETGDIL 1430
                  55544444...459*********************9999887777777777765 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 3.7
      RuvB_N   78 lltnleekdvlfideihrlsraveevlysamedfrldivigkGpsa 123 
                  l+t l++++ +++dei   + +v e l s +e  r  ++ +kG+s 
  CCD26053.2 1506 LITALKTGNFFLLDEISLADDSVLERLNSVLEPERNLLLAEKGTSD 1551
                  6899**************************9998877777777764 PP

  == domain 5  score: 7.1 bits;  conditional E-value: 0.011
      RuvB_N   35 hvllyGpPGlGkttlakiiakelgvklk 62  
                   +ll G+PG+Gkt+l + +a+  g +l 
  CCD26053.2 1770 PILLEGSPGVGKTSLITALADLTGNNLT 1797
                  59**************999987777764 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.039        15      48      71 ..     673     696 ..     644     717 .. 0.81
   2 ?    5.5   0.0     0.039        15      47      78 ..    1104    1135 ..    1067    1156 .. 0.81
   3 !    9.4   0.1    0.0024      0.91      40      72 ..    1384    1414 ..    1375    1429 .. 0.75
   4 ?    0.7   0.0       1.1   4.1e+02      43      73 ..    1766    1796 ..    1755    1806 .. 0.82
   5 ?    7.2   0.0     0.011       4.3      48      77 ..    2078    2107 ..    2066    2218 .. 0.60
   6 ?   -1.3   0.0       4.7   1.8e+03      59     127 ..    2389    2453 ..    2382    2469 .. 0.70

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.039
       Rad17  48 LLisGPsGCgkstvvkvLskelgi 71 
                 +L+ G +G gk+tvv+ ++k +  
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKFMNK 696
                 6889***************97654 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.039
       Rad17   47 iLLisGPsGCgkstvvkvLskelgiklrewln 78  
                   +L+ GP+  gk+ ++k L+ + g k+    n
  CCD26053.2 1104 PVLVQGPTSAGKTSMIKYLADITGHKFVRINN 1135
                  5799********************99877655 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0024
       Rad17   40 LesrkkriLLisGPsGCgkstvvkvLskelgik 72  
                  L+++  + +L+ G +GCgk+t+ ++Ls  +  +
  CCD26053.2 1384 LQNN--EPVLLVGETGCGKTTICQILSAFMKKD 1414
                  5554..456788**************9766554 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 1.1
       Rad17   43 rkkriLLisGPsGCgkstvvkvLskelgikl 73  
                  + ++ +L+ G +G gk+  +  L+   g +l
  CCD26053.2 1766 QVHKPILLEGSPGVGKTSLITALADLTGNNL 1796
                  55777899***************99888766 PP

  == domain 5  score: 7.2 bits;  conditional E-value: 0.011
       Rad17   48 LLisGPsGCgkstvvkvLskelgiklrewl 77  
                  L++ GPs  gks +++ L+ +lg+++  ++
  CCD26053.2 2078 LILVGPSNSGKSAIIRTLANILGTEVGFFS 2107
                  7899*******************9986544 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 4.7
       Rad17   59 stvvkvLskelgiklrewlnpvslkepdnqksdfkgltekesrflsqiesfkeleLkdakylklqklGd 127 
                     v vL  +   ++++w n  + +    qk+ ++g+ +  + fl+ ++  + +   d  y k q +  
  CCD26053.2 2389 ESLVTVLPLIQLRDIQQWTNNALSNAGFTQKDSYLGINNLVK-FLAEMNIIERM---DKVYSKSQSRTR 2453
                  566788888889999*****9985555559999999888776.98888776555...555555555555 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.37   1.4e+02       4      19 ..     319     334 ..     316     342 .. 0.86
   2 !    7.7   0.1    0.0073       2.8       4      23 ..     673     692 ..     670     758 .. 0.85
   3 ?   -1.1   0.0       3.9   1.5e+03       4      23 ..    1105    1124 ..    1104    1137 .. 0.88
   4 !   13.1   0.1   0.00016     0.062       4      23 ..    1390    1409 ..    1387    1428 .. 0.83
   5 ?    2.3   0.0      0.33   1.3e+02       2      24 ..    1769    1791 ..    1768    1827 .. 0.78
   6 ?   -2.3   0.0       9.1   3.5e+03       4      22 ..    2078    2096 ..    2077    2099 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.37
   PduV-EutP   4 illiGkvgsGKttLtq 19 
                 ++l+G+ g+GKt L +
  CCD26053.2 319 VMLVGQAGAGKTFLIN 334
                 9***********9976 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0073
   PduV-EutP   4 illiGkvgsGKttLtqalkg 23 
                 +ll+G++g+GKtt+ q++ +
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAK 692
                 89**************9875 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.9
   PduV-EutP    4 illiGkvgsGKttLtqalkg 23  
                  +l+ G++ +GKt++ + l +
  CCD26053.2 1105 VLVQGPTSAGKTSMIKYLAD 1124
                  6889**********999875 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 0.00016
   PduV-EutP    4 illiGkvgsGKttLtqalkg 23  
                  +ll+G++g+GKtt++q l+ 
  CCD26053.2 1390 VLLVGETGCGKTTICQILSA 1409
                  89**************9975 PP

  == domain 5  score: 2.3 bits;  conditional E-value: 0.33
   PduV-EutP    2 kkilliGkvgsGKttLtqalkge 24  
                  k ill G+ g+GKt+L  al + 
  CCD26053.2 1769 KPILLEGSPGVGKTSLITALADL 1791
                  679999************99874 PP

  == domain 6  score: -2.3 bits;  conditional E-value: 9.1
   PduV-EutP    4 illiGkvgsGKttLtqalk 22  
                  ++l+G+++sGK ++ ++l 
  CCD26053.2 2078 LILVGPSNSGKSAIIRTLA 2096
                  69**********9999886 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.7   2.7e+02      25      54 ..     305     335 ..     294     349 .. 0.70
   2 !    7.5   0.0    0.0064       2.4      34      58 ..     668     693 ..     645     709 .. 0.75
   3 ?    1.5   0.0      0.45   1.7e+02      21      57 ..    1089    1124 ..    1080    1141 .. 0.80
   4 !   11.8   0.0   0.00031      0.12      25      99 ..    1378    1459 ..    1370    1475 .. 0.71
   5 ?   -1.7   0.0       4.2   1.6e+03      36      58 ..    1769    1791 ..    1751    1809 .. 0.73
   6 ?    2.8   0.0      0.17        66      38      55 ..    2078    2095 ..    2073    2101 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.7
        TniB  25 eLleypkrkrm.pnlllvGdsnnGKtmivek 54 
                 +L + +k+ +  + ++lvG+   GKt ++++
  CCD26053.2 305 ALRKLAKQLQYnEPVMLVGQAGAGKTFLINE 335
                 3334444333324689************986 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0064
        TniB  34 rm.pnlllvGdsnnGKtmivekFarl 58 
                 +m + +llvG++ +GKt++v++ a+ 
  CCD26053.2 668 QMtEPVLLVGETGTGKTTVVQQMAKF 693
                 343679**************998765 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.45
        TniB   21 erLeeLleypkrkrmpnlllvGdsnnGKtmivekFar 57  
                  +++ +L+++ +  r p +l+ G++  GKt++++  a+
  CCD26053.2 1089 KNMMNLVRASSGRRFP-VLVQGPTSAGKTSMIKYLAD 1124
                  5667777777777755.899***********997665 PP

  == domain 4  score: 11.8 bits;  conditional E-value: 0.00031
        TniB   25 eLleypkrkrmpnlllvGdsnnGKtmive...kFarlhppe..kdedaekvpvlvvqappkpd...ekrlyaaiLealgaplk 99  
                   L+++  ++  + +llvG++ +GKt+i++    F++++  +   ++++e+ ++l +q p +     +++l + i++al +p  
  CCD26053.2 1378 VLVSKCLQNN-EPVLLVGETGCGKTTICQilsAFMKKDLITlnAHQNTETGDILGAQRPIRNRselQNQLANTIIKALDMPST 1459
                  5555544444.5689**********98763337888887763245667788******986543222789*********99964 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 4.2
        TniB   36 pnlllvGdsnnGKtmivekFarl 58  
                  + +ll G + +GKt+++   a+l
  CCD26053.2 1769 KPILLEGSPGVGKTSLITALADL 1791
                  468999**********9887765 PP

  == domain 6  score: 2.8 bits;  conditional E-value: 0.17
        TniB   38 lllvGdsnnGKtmivekF 55  
                  l+lvG+sn GK++i++  
  CCD26053.2 2078 LILVGPSNSGKSAIIRTL 2095
                  689************875 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0       0.5   1.9e+02       1      35 [.     319     353 ..     319     398 .. 0.87
   2 ?    7.5   0.1     0.015       5.7       1      44 [.     673     719 ..     673     806 .. 0.80
   3 ?    4.2   0.0      0.15        59       1      30 [.    1105    1138 ..    1105    1197 .. 0.73
   4 !   12.2   0.4   0.00053       0.2       1      65 [.    1390    1455 ..    1390    1543 .. 0.63
   5 !   14.1   0.0   0.00013     0.051       1      25 [.    1771    1808 ..    1771    1865 .. 0.69
   6 ?    5.1   0.0     0.084        32       2      36 ..    2079    2111 ..    2078    2157 .. 0.75
   7 ?   -1.4   0.0       8.5   3.3e+03      78     121 ..    4843    4886 ..    4790    4903 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.5
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvaken 35 
                 ++l G +G+GKt l +e sk  ++++ + +++  +
  CCD26053.2 319 VMLVGQAGAGKTFLINEASKYIQCHDSIVKIHLGE 353
                 7899**************99888877777776655 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.015
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvakenglllevdpe 44 
                 +ll G  G+GKtt+ +  +k ++    ++n+++    ++ll ++ p 
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKFMNKtltVINVSQQTETGDLLGGYKPV 719
                 7899**************99873368988888888888888887777 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.15
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf....gvnlrd 30  
                  +l+ G+  +GKt++ k+L++ +g       n+ +
  CCD26053.2 1105 VLVQGPTSAGKTSMIKYLADITGHkfvrINNHEH 1138
                  7899**************9987444555333333 PP

  == domain 4  score: 12.2 bits;  conditional E-value: 0.00053
      AAA_18    1 IlltGtpGvGKttlakeLskrlgf...gvnlrdvakenglllevdpealdeskrldedkldklldale 65  
                  +ll G  G+GKtt+++ Ls  ++      n  ++   +++l  + p   ++  +l+ +  + +++al+
  CCD26053.2 1390 VLLVGETGCGKTTICQILSAFMKKdliTLNAHQNTETGDILGAQRPI--RNRSELQNQLANTIIKALD 1455
                  7899**************66532245666666666666666666666..4444444444444444443 PP

  == domain 5  score: 14.1 bits;  conditional E-value: 0.00013
      AAA_18    1 IlltGtpGvGKttlakeLskrl.gf............g 25  
                  Ill G pGvGKt+l  +L++++ ++            +
  CCD26053.2 1771 ILLEGSPGVGKTSLITALADLTgNNltrinlseqtdlV 1808
                  89*******************94447844444433331 PP

  == domain 6  score: 5.1 bits;  conditional E-value: 0.084
      AAA_18    2 lltGtpGvGKttlakeLskrlgfgvnlrdvakeng 36  
                  +l G++ +GK+ + + L++ l  g+++++   +++
  CCD26053.2 2079 ILVGPSNSGKSAIIRTLANIL--GTEVGFFSMNSD 2111
                  799**************9999..555554444433 PP

  == domain 7  score: -1.4 bits;  conditional E-value: 8.5
      AAA_18   78 vidghlaeleseaakdikkvvL...taspeelleRlekRgyeeakik 121 
                  +++  +a + s+++ ++  +v+    ++++e  +Rl +R +e +ki+
  CCD26053.2 4843 IFERARAFNNSDQW-QLE-IVIsdgICEDHETVQRLVRRARE-NKIM 4886
                  55555555554433.344.55533359999999999999854.5554 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0     0.005       1.9       4      44 ..     309     349 ..     306     379 .. 0.81
   2 !   17.3   0.5   1.3e-05    0.0051       2     101 ..     661     764 ..     660     807 .. 0.70
   3 ?    1.0   0.0       1.5   5.7e+02      16      36 ..    1107    1127 ..    1099    1158 .. 0.80
   4 !   19.4   0.0     3e-06    0.0011       5      52 ..    1381    1431 ..    1379    1498 .. 0.68
   5 ?    4.2   0.0      0.16        59      15      45 ..    1772    1802 ..    1763    1822 .. 0.82
   6 !    9.2   0.0    0.0042       1.6       8      67 ..    2072    2136 ..    2066    2219 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.005
                 EEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   4 vslklkegekvaivGenGaGKStLlkllagllkpteGeill 44 
                 +  +l+ +e v +vG+ GaGK+ L++  ++  +     +++
  CCD26053.2 309 LAKQLQYNEPVMLVGQAGAGKTFLINEASKYIQCHDSIVKI 349
                 56689999*****************9877777766666655 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.3e-05
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG....B-HHHCCHCEEEE-SS--S-TTSBHHHH..HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlke....qeleslrkeigvlpqepqlfpeltvren..esdeeiekalsklg 93 
                 +++ ++++  e v +vGe+G+GK+t+++ +a+ +++t   i++  ++++        +++ +k i+v  qe  lf++l +++   +++e+++k+l+k  
  CCD26053.2 661 EQIAVTIQMTEPVLLVGETGTGKTTVVQQMAKFMNKTLTVINVSqQTET-GdllgGYKPVNSKTIAVPIQE--LFETLFIATFslKKNERFSKMLHKCF 756
                 57899******************************99998877733333.347766677777777777777..33333333333355555555555555 PP

                 TGGTTCBG CS
                 xxxxxxxx RF
    ABC_tran  94 lkelkdtv 101
                 +k+  ++v
  CCD26053.2 757 NKGQWKNV 764
                 54444443 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 1.5
                  EEESTTSSHHHHHHHHTTSS- CS
                  xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   16 ivGenGaGKStLlkllagllk 36  
                  + G++ aGK++++k la  + 
  CCD26053.2 1107 VQGPTSAGKTSMIKYLADITG 1127
                  67*************998764 PP

  == domain 4  score: 19.4 bits;  conditional E-value: 3e-06
                  EEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG.....B CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x RF
    ABC_tran    5 slklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke.....q 52  
                  s  l+++e v +vGe+G+GK+t++++l+  +k+  + i+l+ ++ +e      
  CCD26053.2 1381 SKCLQNNEPVLLVGETGCGKTTICQILSAFMKK--DLITLNAHQNTEtgdilG 1431
                  667899999********************9975..666666444433333331 PP

  == domain 5  score: 4.2 bits;  conditional E-value: 0.16
                  EEEESTTSSHHHHHHHHTTSS--SEEEEEET CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   15 aivGenGaGKStLlkllagllkpteGeilld 45  
                   + G+ G GK++L+ +la l+ ++  +i+l 
  CCD26053.2 1772 LLEGSPGVGKTSLITALADLTGNNLTRINLS 1802
                  6779**************9987766666555 PP

  == domain 6  score: 9.2 bits;  conditional E-value: 0.0042
                  EETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGG....B-HHHCCHCEEEE-SS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx....xxxxxxxxxxxxxxxx RF
    ABC_tran    8 lkegekvaivGenGaGKStLlkllagllkpteGeilld.gkdlke....qeleslrkeigvlpqe 67  
                  ++++  + +vG++ +GKS ++++la+ l  + G   ++ + d+ +     e     ++i+++  +
  CCD26053.2 2072 INNNWPLILVGPSNSGKSAIIRTLANILGTEVGFFSMNsDVDSMDilggYEQVDITRKISYIVND 2136
                  66677789*******************99999988666333333367777777777788888777 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.84   3.2e+02       1      22 [.     319     340 ..     319     358 .. 0.81
   2 !    9.6   0.1    0.0031       1.2       1      28 [.     673     700 ..     673     724 .. 0.77
   3 ?    3.0   0.0      0.33   1.3e+02       1      26 [.    1105    1130 ..    1105    1150 .. 0.80
   4 !    8.8   0.0    0.0054         2       1      26 [.    1390    1415 ..    1390    1436 .. 0.80
   5 ?    4.4   0.0      0.13        48       1      22 [.    1771    1792 ..    1771    1812 .. 0.82
   6 ?    5.7   0.0     0.049        19       2      26 ..    2079    2103 ..    2078    2127 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.84
  RNA_helicase   1 iwlyGpsgeGKStlakeLakal 22 
                   ++l+G++g GK+ l++e +k +
    CCD26053.2 319 VMLVGQAGAGKTFLINEASKYI 340
                   6899***********9955544 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0031
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkklkl 28 
                   ++l+G++g+GK+t+++++ak + k+l  
    CCD26053.2 673 VLLVGETGTGKTTVVQQMAKFMNKTLTV 700
                   5799*************99988887733 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.33
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkkl 26  
                    ++++Gp+  GK++++k+La+    k+
    CCD26053.2 1105 VLVQGPTSAGKTSMIKYLADITGHKF 1130
                    5799*************988766555 PP

  == domain 4  score: 8.8 bits;  conditional E-value: 0.0054
  RNA_helicase    1 iwlyGpsgeGKStlakeLakallkkl 26  
                    ++l+G++g+GK+t+++ L++ + k+l
    CCD26053.2 1390 VLLVGETGCGKTTICQILSAFMKKDL 1415
                    5799*************887777665 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.13
  RNA_helicase    1 iwlyGpsgeGKStlakeLakal 22  
                    i+l G++g+GK++l++ La+  
    CCD26053.2 1771 ILLEGSPGVGKTSLITALADLT 1792
                    6799*************88755 PP

  == domain 6  score: 5.7 bits;  conditional E-value: 0.049
  RNA_helicase    2 wlyGpsgeGKStlakeLakallkkl 26  
                    +l+Gps+ GKS ++++La+ l +++
    CCD26053.2 2079 ILVGPSNSGKSAIIRTLANILGTEV 2103
                    799**************99998665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.1   4.1e+02      54      76 ..     317     339 ..     301     353 .. 0.74
   2 !   12.0   0.0   0.00022     0.084      52      90 ..     669     706 ..     654     724 .. 0.86
   3 ?   -0.3   0.0       1.3   4.9e+02      55      93 ..    1104    1142 ..    1085    1150 .. 0.77
   4 ?    3.8   0.0     0.072        28      54      81 ..    1388    1415 ..    1375    1439 .. 0.80
   5 ?    6.0   0.0     0.015       5.8      54      86 ..    1769    1800 ..    1750    1811 .. 0.67
   6 ?   -1.9   0.0       3.8   1.5e+03      56      76 ..    2078    2098 ..    2072    2103 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.1
      DUF815  54 nnvLLwGarGtGKSslvkallne 76 
                 + v+L+G+ G+GK  l+  + + 
  CCD26053.2 317 EPVMLVGQAGAGKTFLINEASKY 339
                 359***********999876654 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00022
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeegLrlieveke 90 
                  ++ vLL+G+ GtGK ++v+ +  ++ +++L +i+v+++
  CCD26053.2 669 MTEPVLLVGETGTGKTTVVQQMA-KFMNKTLTVINVSQQ 706
                 56779**************9875.678899******986 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 1.3
      DUF815   55 nvLLwGarGtGKSslvkallneyaeegLrlievekedlk 93  
                   vL+ G   +GK s++k l   + ++ +r+ + e++dl+
  CCD26053.2 1104 PVLVQGPTSAGKTSMIKYLADITGHKFVRINNHEHTDLQ 1142
                  4899***************99999998888777777766 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.072
      DUF815   54 nnvLLwGarGtGKSslvkallneyaeeg 81  
                  + vLL+G+ G+GK ++++ l + ++++ 
  CCD26053.2 1388 EPVLLVGETGCGKTTICQILSAFMKKDL 1415
                  459***********99987766655544 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.015
      DUF815   54 nnvLLwGarGtGKSslvkallneyaeegLrlie 86  
                  + +LL G+ G+GK sl+ al   + + +L  i+
  CCD26053.2 1769 KPILLEGSPGVGKTSLITALADLTGN-NLTRIN 1800
                  459***************98765444.444444 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 3.8
      DUF815   56 vLLwGarGtGKSslvkallne 76  
                  ++L+G   +GKS+++++l n 
  CCD26053.2 2078 LILVGPSNSGKSAIIRTLANI 2098
                  5899************99875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.39   1.5e+02       2      21 ..     319     338 ..     318     359 .. 0.83
   2 ?    3.5   0.2      0.19        72       2      30 ..     673     704 ..     672     724 .. 0.74
   3 ?    3.2   0.0      0.24        90       2      32 ..    1105    1139 ..    1104    1159 .. 0.73
   4 ?    4.3   0.0      0.11        42       2      55 ..    1390    1458 ..    1389    1509 .. 0.62
   5 ?    4.9   0.0      0.07        27       3      21 ..    1772    1790 ..    1770    1807 .. 0.81
   6 !    8.6   0.1    0.0049       1.9       3      21 ..    2079    2097 ..    2078    2117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.39
                 EEEEESTTSSHHHHHHHHHT CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg 21 
                 v++vG+  +GK+ Lin  ++
  CCD26053.2 319 VMLVGQAGAGKTFLINEASK 338
                 89**************9776 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.19
                 EEEEESTTSSHHHHHHHHHT...STEEESSST CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg...ekaivsdkp 30 
                 v++vG + +GK+t+++++ +   ++  v +  
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKfmnKTLTVINVS 704
                 789**************987332333444433 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.24
                  EEEEESTTSSHHHHHHHHHT...S.TEEESSSTTS CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltg...e.kaivsdkpgt 32  
                  v++ G + +GK+++i+ l +      ++++++  t
  CCD26053.2 1105 VLVQGPTSAGKTSMIKYLADitgHkFVRINNHEHT 1139
                  6788*************975332324566666555 PP

  == domain 4  score: 4.3 bits;  conditional E-value: 0.11
                  EEEEESTTSSHHHHHHHHHT............STEEESSSTTSSSSE.EEEEEE..ETTEEEEEEECGG CS
    MMR_HSR1    2 vaivGrpNvGKStLinaltg............ekaivsdkpgtTrdi.negrvk..lkgkeielvDtpG 55  
                  v++vG +  GK+t+ + l+             ++ +++d+ g+ r i n+ +++  l ++ i+ +D+p 
  CCD26053.2 1390 VLLVGETGCGKTTICQILSAfmkkdlitlnahQNTETGDILGAQRPIrNRSELQnqLANTIIKALDMPS 1458
                  789************999854443333333223555555555555553333343333334467777776 PP

  == domain 5  score: 4.9 bits;  conditional E-value: 0.07
                  EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1    3 aivGrpNvGKStLinaltg 21  
                  ++ G p vGK++Li al +
  CCD26053.2 1772 LLEGSPGVGKTSLITALAD 1790
                  6779************975 PP

  == domain 6  score: 8.6 bits;  conditional E-value: 0.0049
                  EEEESTTSSHHHHHHHHHT CS
    MMR_HSR1    3 aivGrpNvGKStLinaltg 21  
                  ++vG +N+GKS +i++l +
  CCD26053.2 2079 ILVGPSNSGKSAIIRTLAN 2097
                  69***************87 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0      0.07        27       2      18 ..     318     334 ..     317     344 .. 0.87
   2 !    7.6   0.1    0.0084       3.2       2      22 ..     672     692 ..     671     697 .. 0.88
   3 ?    6.7   0.0     0.016       6.2       2      21 ..    1389    1408 ..    1388    1422 .. 0.80
   4 ?    7.1   0.0     0.012       4.7       2      23 ..    1770    1791 ..    1769    1796 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.07
                 CEEEEC-TTTCHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlq 18 
                 +v+l G+aG GKT L+ 
  CCD26053.2 318 PVMLVGQAGAGKTFLIN 334
                 689***********986 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0084
                 CEEEEC-TTTCHHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqklal 22 
                 +v+l Ge G GKTt +q++a 
  CCD26053.2 672 PVLLVGETGTGKTTVVQQMAK 692
                 699**************9886 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.016
                  CEEEEC-TTTCHHHHHHHHH CS
       NACHT    2 lvilqGeaGsGKTtLlqkla 21  
                  +v+l Ge G+GKTt  q l 
  CCD26053.2 1389 PVLLVGETGCGKTTICQILS 1408
                  699***********877654 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.012
                  CEEEEC-TTTCHHHHHHHHHHH CS
       NACHT    2 lvilqGeaGsGKTtLlqklala 23  
                  +++l+G +G+GKT L+  la++
  CCD26053.2 1770 PILLEGSPGVGKTSLITALADL 1791
                  689*************999976 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.076        29       2      20 ..     319     337 ..     318     358 .. 0.84
   2 !    8.4   0.1    0.0061       2.3       2      39 ..     673     708 ..     672     727 .. 0.79
   3 ?   -0.1   0.0       2.7     1e+03       3      21 ..    1106    1124 ..    1105    1134 .. 0.82
   4 ?    5.3   0.0     0.058        22       2      20 ..    1390    1408 ..    1389    1456 .. 0.78
   5 ?    3.8   0.0      0.16        62       2      22 ..    1771    1791 ..    1770    1806 .. 0.84
   6 ?    2.5   0.0      0.41   1.6e+02       2      20 ..    2078    2096 ..    2077    2102 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.076
                 EEEESSTTSSHHHHHHCHC CS
         Roc   2 vvlvGdsgvGKtsllkrfv 20 
                 v+lvG++g+GKt l+++  
  CCD26053.2 319 VMLVGQAGAGKTFLINEAS 337
                 89************99765 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0061
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEE CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltk 39 
                 v+lvG++g+GKt+ ++++   kf +k+ + i v+  t+
  CCD26053.2 673 VLLVGETGTGKTTVVQQMA--KFMNKTLTVINVSQQTE 708
                 79**************987..67777777777766554 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 2.7
                  EEESSTTSSHHHHHHCHCT CS
         Roc    3 vlvGdsgvGKtsllkrfve 21  
                  ++ G +++GKts++k + +
  CCD26053.2 1106 LVQGPTSAGKTSMIKYLAD 1124
                  56699*********98765 PP

  == domain 4  score: 5.3 bits;  conditional E-value: 0.058
                  EEEESSTTSSHHHHHHCHC CS
         Roc    2 vvlvGdsgvGKtsllkrfv 20  
                  v+lvG++g GKt++++ + 
  CCD26053.2 1390 VLLVGETGCGKTTICQILS 1408
                  79***********987543 PP

  == domain 5  score: 3.8 bits;  conditional E-value: 0.16
                  EEEESSTTSSHHHHHHCHCT- CS
         Roc    2 vvlvGdsgvGKtsllkrfved 22  
                  ++l G  gvGKtsl++ + + 
  CCD26053.2 1771 ILLEGSPGVGKTSLITALADL 1791
                  56779**********998765 PP

  == domain 6  score: 2.5 bits;  conditional E-value: 0.41
                  EEEESSTTSSHHHHHHCHC CS
         Roc    2 vvlvGdsgvGKtsllkrfv 20  
                  ++lvG s++GK+ +++ + 
  CCD26053.2 2078 LILVGPSNSGKSAIIRTLA 2096
                  69*************9876 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0      0.11        41      42      63 ..     311     332 ..     292     345 .. 0.81
   2 ?    4.8   0.0     0.055        21      21      68 ..     647     691 ..     630     703 .. 0.70
   3 ?   -1.2   0.0       3.8   1.5e+03      49     123 ..    1104    1184 ..    1077    1194 .. 0.64
   4 ?    3.9   0.0       0.1        39      42      65 ..    1382    1405 ..    1357    1416 .. 0.85
   5 !    8.3   0.0    0.0046       1.8      36      88 ..    1757    1809 ..    1737    1850 .. 0.80
   6 ?   -0.7   0.0       2.6     1e+03      44      69 ..    2072    2097 ..    2067    2120 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.11
   IstB_IS21  42 sfiekkenivllGpsGvGKshl 63 
                 + ++ +e ++l+G++G+GK++l
  CCD26053.2 311 KQLQYNEPVMLVGQAGAGKTFL 332
                 45788999*************9 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.055
   IstB_IS21  21 didfraarsldkrkvkeLatlsfiekkenivllGpsGvGKshlaialg 68 
                 + +f+ + + + r ++++a +  i+  e ++l+G +G+GK+ +   ++
  CCD26053.2 647 STAFAIT-NHSLRLMEQIAVT--IQMTEPVLLVGETGTGKTTVVQQMA 691
                 4555444.4444555555443..88899*************8776665 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 3.8
   IstB_IS21   49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkr....arrdgklar..alkrllkvdllilDdlgllpld 123 
                   +++ Gp+ +GK+ +   l+  + ++ +++     +dL e l +    + ++ ++ +   +++l k   ++lD+l l p d
  CCD26053.2 1104 PVLVQGPTSAGKTSMIKYLADITGHKFVRINNHEHTDLQEYLGTyitdETGKLSFREgiLVEALRKGYWIVLDELNLAPTD 1184
                  58899*******977766666666666666666666666665431100333333333213455666677888888877776 PP

  == domain 4  score: 3.9 bits;  conditional E-value: 0.1
   IstB_IS21   42 sfiekkenivllGpsGvGKshlai 65  
                  + ++++e ++l+G +G GK+ +  
  CCD26053.2 1382 KCLQNNEPVLLVGETGCGKTTICQ 1405
                  568899**************8865 PP

  == domain 5  score: 8.3 bits;  conditional E-value: 0.0046
   IstB_IS21   36 keLatlsfiekkenivllGpsGvGKshlaialgveavraglsvlfvrvedLve 88  
                  + ++    ++ ++ i+l G +GvGK+ l +al+  + ++ +++     +dLv 
  CCD26053.2 1757 NLMRVVRAMQVHKPILLEGSPGVGKTSLITALADLTGNNLTRINLSEQTDLVD 1809
                  44555566778999******************988877777777777777776 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 2.6
   IstB_IS21   44 iekkenivllGpsGvGKshlaialgv 69  
                  i+++  ++l+Gps  GKs +  +l+ 
  CCD26053.2 2072 INNNWPLILVGPSNSGKSAIIRTLAN 2097
                  6677789***********98877764 PP

>> VWA  von Willebrand factor type A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.7   6.1e-08   2.3e-05       2     155 ..    4755    4906 ..    4754    4924 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 6.1e-08
                  EEEEEE-STTSCHHHHH.HHHHHHHHHHHHHTBTTTTEEEEEEEESSSEEEEEETTSHCHHHHHHHHHHTGSGGGGSSC-HHHHHHHHHHHHHHHHG CS
         VWA    2 ivfvlDgSgsmgeenfe.kvkefikklveklevgpegtrvglvqfssevktefslndysskeellsalnnlkysgggttntgkalkyaleklfkssa 97  
                  i++++D S+sm+e++    + + +  + + l+ + e+  +++v+f+ +++++ ++++  s+e+ ++a + +++++++t+ ++  +++ ++ +f++++
  CCD26053.2 4755 IMIAIDDSKSMSESKCVkLAFDSLCLVSKTLT-QLESGGLSIVKFGQHTREVHPFQQQFSNEAGAKAFQWFNFQDTKTD-VKRLVAESIK-IFERAR 4848
                  89*********999988544444444444444.5557789*****************7788******************.9988888888.666666 PP

                  T.SSTTSEEEEEEEESS--CS.SHTHHHHHHHHGCTEEEEEEEESSSHHHHHHHHHSSSS CS
         VWA   98 g.aRenakkviilltdGksnd.gdpkeaaneakeqgikvfavGvgnadekelLnkiasep 155 
                    + ++  ++ i+++dG  +d + +++ +++a+e++i ++ v ++ +++ +  ++i  ++
  CCD26053.2 4849 AfNNSDQWQLEIVISDGICEDhETVQRLVRRARENKIMLVFVIIDGINNSN--ESIMDMS 4906
                  64777999***********9966*******************997776666..4554444 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.23        89       4      26 ..     319     341 ..     316     351 .. 0.83
   2 !   10.2   0.4    0.0011      0.43       4      28 ..     673     697 ..     670     705 .. 0.88
   3 ?    7.0   0.0     0.011         4       4      28 ..    1390    1414 ..    1387    1420 .. 0.89
   4 ?    2.9   0.0       0.2        75       4      28 ..    1771    1795 ..    1768    1804 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.23
                 EEEEESTTSSHHHHHHHHHHHHH CS
       SRP54   4 illvGlqGaGKTttlaKLaallk 26 
                 ++lvG  GaGKT  +   +++++
  CCD26053.2 319 VMLVGQAGAGKTFLINEASKYIQ 341
                 8***********99988887776 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0011
                 EEEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54   4 illvGlqGaGKTttlaKLaallkke 28 
                 +llvG +G+GKTt + ++a+ ++k 
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKFMNKT 697
                 79*****************998875 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.011
                  EEEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54    4 illvGlqGaGKTttlaKLaallkke 28  
                  +llvG +G GKTt +  L+a +kk+
  CCD26053.2 1390 VLLVGETGCGKTTICQILSAFMKKD 1414
                  79***************99999875 PP

  == domain 4  score: 2.9 bits;  conditional E-value: 0.2
                  EEEEESTTSSHHHHHHHHHHHHHHT CS
       SRP54    4 illvGlqGaGKTttlaKLaallkke 28  
                  ill G  G+GKT+ ++ La+l  ++
  CCD26053.2 1771 ILLEGSPGVGKTSLITALADLTGNN 1795
                  8999***************987665 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.011       4.2      11      35 ..     308     332 ..     301     348 .. 0.88
   2 ?    6.3   0.1     0.015       5.8      13      66 ..     664     714 ..     652     755 .. 0.64
   3 ?    4.6   0.0     0.051        19      13      39 ..    1381    1407 ..    1377    1434 .. 0.84
   4 ?    0.1   0.0       1.2   4.6e+02      11      40 ..    1760    1789 ..    1753    1802 .. 0.83
   5 ?   -2.2   0.0       5.9   2.3e+03      22      92 ..    2078    2146 ..    2066    2157 .. 0.62

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.011
                 HHHHHHHH-SEEEEE--TTSSTTHH CS
        PhoH  11 eylealkkndivfaiGpaGtGKtyl 35 
                 +++++l+ n+ v+ +G+aG+GKt+l
  CCD26053.2 308 KLAKQLQYNEPVMLVGQAGAGKTFL 332
                 678899999***************9 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.015
                 HHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT---- CS
        PhoH  13 lealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageelG 66 
                 + +++  + v  +G++GtGKt +  ++a   +++k++  +i +  + e g+ lG
  CCD26053.2 664 AVTIQMTEPVLLVGETGTGKTTVVQQMAK--FMNKTL-TVINVSQQTETGDLLG 714
                 445667788999*********98877774..333333.3455555556666665 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.051
                  HHHHHH-SEEEEE--TTSSTTHHHHHH CS
        PhoH   13 lealkkndivfaiGpaGtGKtylaval 39  
                   + l++n+ v  +G++G+GKt +   l
  CCD26053.2 1381 SKCLQNNEPVLLVGETGCGKTTICQIL 1407
                  578999***************987554 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 1.2
                  HHHHHHHH-SEEEEE--TTSSTTHHHHHHH CS
        PhoH   11 eylealkkndivfaiGpaGtGKtylavala 40  
                  ++++a++ ++ +   G+ G GKt l +ala
  CCD26053.2 1760 RVVRAMQVHKPILLEGSPGVGKTSLITALA 1789
                  6789999999999**********9877765 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 5.9
                  EEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT---.-SS---------TTTHHHHHHHTTTS- CS
        PhoH   22 vfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageel.GflpgdleekvdpylrplydaLkdllg 92  
                  ++ +Gp+ +GK+ +  +la   +   +v  +  +   v++ + l G+ + d++ k++++++ l d L++ll+
  CCD26053.2 2078 LILVGPSNSGKSAIIRTLA--NILGTEVG-FFSMNSDVDSMDILgGYEQVDITRKISYIVNDLKDILRSLLS 2146
                  5566666666664433333..23333332.333444454444442688899999999999999999988875 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.2      0.13        49       2      22 ..     673     693 ..     672     710 .. 0.80
   2 ?    6.9   0.0     0.019       7.1       2      39 ..    1105    1153 ..    1104    1173 .. 0.76
   3 ?    3.0   0.1      0.27     1e+02       2      21 ..    1390    1409 ..    1389    1429 .. 0.88
   4 ?   -1.6   0.0       7.3   2.8e+03      26     102 ..    1624    1697 ..    1610    1705 .. 0.69
   5 ?    6.9   0.1     0.018         7       2      21 ..    1771    1790 ..    1770    1801 .. 0.86
   6 ?   -0.5   0.1       3.5   1.3e+03       3      25 ..    2079    2102 ..    2078    2104 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.13
      AAA_28   2 ivitGgestGKTtlleaLaar 22 
                 + ++G  +tGKTt+++++a+ 
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKF 693
                 678999***********9963 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.019
      AAA_28    2 ivitGgestGKTtlleaLa...........argypvvpEaareileekl 39  
                  + + G+ s+GKT++++ La           +++++ ++E+  +++++++
  CCD26053.2 1105 VLVQGPTSAGKTSMIKYLAditghkfvrinNHEHTDLQEYLGTYITDET 1153
                  5678***************777666655544466677888888888776 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.27
      AAA_28    2 ivitGgestGKTtlleaLaa 21  
                  + ++G  ++GKTt+++ L+a
  CCD26053.2 1390 VLLVGETGCGKTTICQILSA 1409
                  6789999*********9996 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 7.3
      AAA_28   26 vv.pEaareileeklakgedalpwvedllafaervleeqleeeaaa..aankvlfcDrglldtlaYarayggeaeaelea 102 
                  ++ +E++   ++++  + +d+l+wv ++++  +    e++ ++ aa  ++  ++f+D    +++aY+  ++    ++l++
  CCD26053.2 1624 WFgEEFGGGNTTNGIISLRDILAWV-QFINSTS----EKMGDANAAfaHGASMVFIDALGTNNTAYLAEDEAS-LNSLKK 1697
                  6667777777778888888889998.4444333....23333333344899***************9988877.555555 PP

  == domain 5  score: 6.9 bits;  conditional E-value: 0.018
      AAA_28    2 ivitGgestGKTtlleaLaa 21  
                  i + G ++ GKT+l+ aLa+
  CCD26053.2 1771 ILLEGSPGVGKTSLITALAD 1790
                  7899**************96 PP

  == domain 6  score: -0.5 bits;  conditional E-value: 3.5
      AAA_28    3 vitGgestGKTtlleaLaar.gyp 25  
                  +++G++ +GK+ +++ La+  g++
  CCD26053.2 2079 ILVGPSNSGKSAIIRTLANIlGTE 2102
                  689***************866766 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.09        34      18      53 ..     320     355 ..     315     365 .. 0.91
   2 ?    6.7   0.0     0.013         5      14      47 ..     670     703 ..     662    1076 .. 0.84
   3 ?    5.1   0.0     0.041        16      17      43 ..    1390    1415 ..    1372    1838 .. 0.92
   4 ?   -1.6   0.1       4.6   1.8e+03      42      83 ..    4859    4902 ..    4842    4911 .. 0.77

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.09
                  EEEESTTSSHHHHHHHHHHHSSTSSEEEEEEESEEH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  18 lipgafgvGktvisqslskqsnsddaiiyvgiGerg 53 
                  +++g++g Gkt ++++ sk+ + +d i+ +  Ge++
   CCD26053.2 320 MLVGQAGAGKTFLINEASKYIQCHDSIVKIHLGEQT 355
                  789******************9999***99999986 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.013
                  T-EEEEEESTTSSHHHHHHHHHHHSSTSSEEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  14 GqrtlipgafgvGktvisqslskqsnsddaiiyv 47 
                   + +l++g+ g+Gkt+++q+++k +n++ ++i v
   CCD26053.2 670 TEPVLLVGETGTGKTTVVQQMAKFMNKTLTVINV 703
                  5567899*****************9887344433 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.041
                   EEEEESTTSSHHHHHHHHHHHSSTSSE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab   17 tlipgafgvGktvisqslskqsnsdda 43  
                   +l++g+ g+Gkt+i+q ls  +++d +
   CCD26053.2 1390 VLLVGETGCGKTTICQILSAFMKKD-L 1415
                   6789***************998777.3 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 4.6
                   SEEEEEEESEEHHHHHHHHHHCHHSSGGGGEEEE..EEETTS-H CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx RF
  ATP-synt_ab   42 daiiyvgiGergnevaevleefpegtimkrtvlv..antsnepv 83  
                   +++i  gi e +++v++++++ +e++im   v++  +n+sne++
   CCD26053.2 4859 EIVISDGICEDHETVQRLVRRARENKIMLVFVIIdgINNSNESI 4902
                   4889999********************99999985556666665 PP

>> CPT  Chloramphenicol phosphotransferase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       3.9   1.5e+03       4      34 ..     673     703 ..     670     709 .. 0.85
   2 ?    4.8   0.0     0.059        22       4      35 ..    1105    1136 ..    1104    1202 .. 0.78
   3 ?   -1.2   0.0       4.2   1.6e+03       4      29 ..    1390    1415 ..    1388    1426 .. 0.83
   4 ?    2.7   0.0      0.26     1e+02       4      27 ..    1771    1794 ..    1769    1808 .. 0.87
   5 ?    3.6   0.0      0.14        52       5      35 ..    2079    2111 ..    2077    2126 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.9
                 EEEEE-TTSSHHHHHHHHHHHSSS-EEEEEH CS
         CPT   4 ilLnGgsssGKsslaralqevldepwlhlgv 34 
                 +lL G + +GK+++++ + + ++++   ++v
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKFMNKTLTVINV 703
                 89****************9999988776666 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.059
                  EEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHH CS
         CPT    4 ilLnGgsssGKsslaralqevldepwlhlgvD 35  
                  +l +G +s+GK+s+ + l +++ + ++ ++  
  CCD26053.2 1105 VLVQGPTSAGKTSMIKYLADITGHKFVRINNH 1136
                  788999**************999999887654 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 4.2
                  EEEEE-TTSSHHHHHHHHHHHSSS-E CS
         CPT    4 ilLnGgsssGKsslaralqevldepw 29  
                  +lL G +  GK+++ ++l + +++  
  CCD26053.2 1390 VLLVGETGCGKTTICQILSAFMKKDL 1415
                  899**************998877655 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.26
                  EEEEE-TTSSHHHHHHHHHHHSSS CS
         CPT    4 ilLnGgsssGKsslaralqevlde 27  
                  ilL+G++  GK+sl  al +++ +
  CCD26053.2 1771 ILLEGSPGVGKTSLITALADLTGN 1794
                  9*****************998765 PP

  == domain 5  score: 3.6 bits;  conditional E-value: 0.14
                  EEEE-TTSSHHHHHHHHHHHSSS..-EEEEEHH CS
         CPT    5 lLnGgsssGKsslaralqevlde..pwlhlgvD 35  
                  +L G s sGKs++ r l ++l +   ++ +++D
  CCD26053.2 2079 ILVGPSNSGKSAIIRTLANILGTevGFFSMNSD 2111
                  899**************9997541156666665 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1     0.025       9.5      11      35 ..     667     691 ..     658     791 .. 0.69
   2 ?   -0.1   0.0       1.8   6.9e+02      16      30 ..    1104    1118 ..    1089    1129 .. 0.84
   3 ?    6.5   0.0     0.017       6.4      11      43 ..    1384    1422 ..    1378    1543 .. 0.62

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.025
                 HHTTCEEEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  11 ilgggdvlvaaeTGsGKTlaflipv 35 
                 i   + vl+ +eTG+GKT++ +  +
  CCD26053.2 667 IQMTEPVLLVGETGTGKTTVVQQMA 691
                 4456789************965433 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.8
                  EEEEEESTTSSHHHH CS
                  xxxxxxxxxxxxxxx RF
        DEAD   16 dvlvaaeTGsGKTla 30  
                   vlv+++T +GKT +
  CCD26053.2 1104 PVLVQGPTSAGKTSM 1118
                  599**********86 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.017
                  HHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS........T CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........x RF
        DEAD   11 ilgggdvlvaaeTGsGKTlaflipvlqivyet........k 43  
                  + +++ vl+ +eTG GKT++ +i     ++++        +
  CCD26053.2 1384 LQNNEPVLLVGETGCGKTTICQILSA--FMKKdlitlnahQ 1422
                  446789*************9877554..4444455555552 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.094        36      10      47 ..     304     339 ..     296     349 .. 0.83
   2 ?    2.8   5.2      0.27     1e+02      21      49 ..     654     695 ..     637     836 .. 0.72
   3 ?    7.0   0.0     0.014       5.3       9      41 ..    1332    1404 ..    1325    1421 .. 0.79
   4 ?   -0.5   0.0       2.8   1.1e+03      22      47 ..    1766    1791 ..    1741    1800 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.094
                 HHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHH CS
      ResIII  10 eaienlleklkskrdkrglikmaTGtGKTlvaaklier 47 
                 +a+++l+++l  + ++ ++++   G+GKT+++ ++ ++
  CCD26053.2 304 TALRKLAKQL--QYNEPVMLVGQAGAGKTFLINEASKY 339
                 6888999999..599***************98666555 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.27
                 ...............TTSEEEEEESTTSTHHHHHHHHHHHH- CS
      ResIII  21 s.............krdkrglikmaTGtGKTlvaaklierll 49 
                 +             +  + +l++ +TGtGKT v  ++++ + 
  CCD26053.2 654 NhslrlmeqiavtiQMTEPVLLVGETGTGKTTVVQQMAKFMN 695
                 34444444555555788899***********99766554433 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.014
                  HHHHHHHT..............................................TTSEEEEEESTTSTHHHHH CS
      ResIII    9 eeaienlleklks........................................krdkrglikmaTGtGKTlva 41  
                  + +i+n+lek+ +                                        ++++ +l++ +TG+GKT ++
  CCD26053.2 1332 KVVIKNILEKVMKvkldmqqyytnlenkslqlqdsvvwtnglrrlsvlvskclQNNEPVLLVGETGCGKTTIC 1404
                  4457777777777777777777777778888888888888888899999999999***************986 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 2.8
                  .TTSEEEEEESTTSTHHHHHHHHHHH CS
      ResIII   22 krdkrglikmaTGtGKTlvaaklier 47  
                  + +k +l++   G+GKT ++++l++ 
  CCD26053.2 1766 QVHKPILLEGSPGVGKTSLITALADL 1791
                  5688999***********99998875 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.7   6.4e+02       5      20 ..     323     338 ..     319     361 .. 0.84
   2 ?    0.9   0.0       0.8   3.1e+02       7      24 ..     679     697 ..     674     713 .. 0.75
   3 ?    0.8   0.0      0.88   3.3e+02       6      19 ..    1395    1408 ..    1391    1439 .. 0.77
   4 ?    6.2   0.0      0.02       7.6       2      74 ..    1772    1848 ..    1771    1859 .. 0.62

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.7
  Viral_helicase1   5 GvpGcGKStlirkllr 20 
                      G +G+GK+ li ++ +
       CCD26053.2 323 GQAGAGKTFLINEASK 338
                      88*********99765 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.8
  Viral_helicase1   7 pGcGKStlirkllrts.li 24 
                       G GK+t++++ ++     
       CCD26053.2 679 TGTGKTTVVQQMAKFMnKT 697
                      7************995533 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.88
  Viral_helicase1    6 vpGcGKStlirkll 19  
                         GcGK+t+++ l 
       CCD26053.2 1395 ETGCGKTTICQILS 1408
                       57******877544 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.02
  Viral_helicase1    2 vvhGvpGcGKStlirkllrts...liltvnrptaelltegk.pklpnlsvrtvdsflmalvkstkgkililDEylll 74  
                       +  G pG GK++li  l++     l     ++++ l+     + ++ +s++ v +  + l + ++g  ++lDE  l+
       CCD26053.2 1772 LLEGSPGVGKTSLITALADLTgnnLTRINLSEQTDLVDLFGsDAPGEKSGEFVWKDAPFLRAMQQGSWILLDEMNLA 1848
                       67899*************99886433333344455544444544455555544444444444455788888887665 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.27     1e+02       2      22 ..     322     342 ..     321     349 .. 0.86
   2 !    7.7   0.4    0.0072       2.8       2      31 ..     676     702 ..     675     707 .. 0.90
   3 ?   -0.6   0.0       2.4   9.1e+02       1      21 [.    1107    1127 ..    1107    1134 .. 0.86
   4 ?    5.2   0.1      0.04        15       2      23 ..    1393    1414 ..    1392    1420 .. 0.87
   5 ?    0.9   0.0      0.85   3.3e+02       3      31 ..    1775    1800 ..    1773    1803 .. 0.80
   6 ?   -2.2   0.0       7.7   2.9e+03       2      21 ..    2081    2100 ..    2080    2106 .. 0.89

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.27
  ATP_bind_1   2 vGpaGsGKttfvgalseilel 22 
                 vG aG+GKt ++++ s++++ 
  CCD26053.2 322 VGQAGAGKTFLINEASKYIQC 342
                 8***************99875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0072
  ATP_bind_1   2 vGpaGsGKttfvgalseilelrgrsvavvN 31 
                 vG  G GKtt v++++++++++   + v+N
  CCD26053.2 676 VGETGTGKTTVVQQMAKFMNKT---LTVIN 702
                 899****************988...77777 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 2.4
  ATP_bind_1    1 vvGpaGsGKttfvgalseile 21  
                  v Gp ++GKt++++ l++i+ 
  CCD26053.2 1107 VQGPTSAGKTSMIKYLADITG 1127
                  67************9999875 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.04
  ATP_bind_1    2 vGpaGsGKttfvgalseilelr 23  
                  vG  G GKtt+++ ls ++++ 
  CCD26053.2 1393 VGETGCGKTTICQILSAFMKKD 1414
                  899**************99865 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.85
  ATP_bind_1    3 GpaGsGKttfvgalseilelrgrsvavvN 31  
                  G +G+GKt+++ al++++ ++   +  +N
  CCD26053.2 1775 GSPGVGKTSLITALADLTGNN---LTRIN 1800
                  899**********99887655...55555 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 7.7
  ATP_bind_1    2 vGpaGsGKttfvgalseile 21  
                  vGp  sGK+ ++++l++il 
  CCD26053.2 2081 VGPSNSGKSAIIRTLANILG 2100
                  8**************99875 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.024       9.3      36      59 ..     669     690 ..     651     692 .. 0.81
   2 ?    1.1   0.0      0.56   2.2e+02      37      58 ..    1387    1406 ..    1377    1414 .. 0.76
   3 ?    3.5   0.0       0.1        38      25      59 ..    2063    2095 ..    2051    2139 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.024
                   GGS-.SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  36 kkmashllvaGatgsGKStalntL 59 
                    +    +l++G tg+GK+t+++ +
    CCD26053.2 669 MT--EPVLLVGETGTGKTTVVQQM 690
                   33..449**************987 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.56
                    GS-.SEEEE--TTSSHHHHHHH CS
  FtsK_SpoIIIE   37 kmashllvaGatgsGKStalnt 58  
                    + +  +l++G tg GK+t  + 
    CCD26053.2 1387 NEP--VLLVGETGCGKTTICQI 1406
                    344..9************9884 PP

  == domain 3  score: 3.5 bits;  conditional E-value: 0.1
                    ETTS-EEEEEGGGS-.SEEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE   25 eisgnplvldlkkmashllvaGatgsGKStalntL 59  
                    ei +++l++  ++++  l+++G + sGKS  ++tL
    CCD26053.2 2063 EIYESALMCINNNWP--LILVGPSNSGKSAIIRTL 2095
                    556677777888999..9****************8 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0       1.3   4.8e+02       2      27 ..     319     344 ..     318     348 .. 0.85
   2 ?    5.1   0.6     0.052        20       2      25 ..     673     696 ..     672     710 .. 0.85
   3 ?    3.6   0.1      0.15        57       2      25 ..    1390    1413 ..    1389    1419 .. 0.83
   4 ?    3.4   0.0      0.17        66       2      22 ..    1771    1791 ..    1770    1799 .. 0.83
   5 ?   -2.2   0.0       9.1   3.5e+03       3      30 ..    2079    2103 ..    2078    2128 .. 0.83

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 1.3
                 EEEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssg 27 
                 v++ G+ G GKt l++ +++ ++ ++
  CCD26053.2 319 VMLVGQAGAGKTFLINEASKYIQCHD 344
                 7899*************999987655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.052
                 EEEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellks 25 
                 v++ G+ G+GKtT+v+++++ +++
  CCD26053.2 673 VLLVGETGTGKTTVVQQMAKFMNK 696
                 6899*************9987744 PP

  == domain 3  score: 3.6 bits;  conditional E-value: 0.15
                  EEEE--TTSSHHHHHHHHHHHH.. CS
    NTPase_1    2 vfiTGppGvGKtTlvkkvlellks 25  
                  v++ G+ G GKtT+++ ++  +k+
  CCD26053.2 1390 VLLVGETGCGKTTICQILSAFMKK 1413
                  6899***********988877765 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.17
                  EEEE--TTSSHHHHHHHHHHH CS
    NTPase_1    2 vfiTGppGvGKtTlvkkvlel 22  
                  +++ G+pGvGKt l+  +++l
  CCD26053.2 1771 ILLEGSPGVGKTSLITALADL 1791
                  6789***********988775 PP

  == domain 5  score: -2.2 bits;  conditional E-value: 9.1
                  EEE--TTSSHHHHHHHHHHHH...GGGE CS
    NTPase_1    3 fiTGppGvGKtTlvkkvlellkssgvkv 30  
                  ++ Gp+ +GK+ +++ +++ l   g +v
  CCD26053.2 2079 ILVGPSNSGKSAIIRTLANIL---GTEV 2103
                  788**************9999...5555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4961 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2077  (0.115846); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                       201  (0.0112109); expected 17.9 (0.001)
Passed Fwd filter:                        86  (0.0047967); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              47  [number of targets reported over threshold]
# CPU time: 3.54u 0.41s 00:00:03.95 Elapsed: 00:00:00.69
# Mc/sec: 21673.51
//
Query:       CCD26054.2  [L=380]
Description: hypothetical protein NDAI_0G02770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-23   80.4   0.1    1.6e-22   79.4   0.1    1.5  1  tRNA_int_endo    tRNA intron endonuclease, catalytic C-termin
  ------ inclusion threshold ------
      0.073   12.8   0.0        1.1    9.0   0.0    2.4  2  tRNA_int_endo_N  tRNA intron endonuclease, N-terminal domain


Domain annotation for each model (and alignments):
>> tRNA_int_endo  tRNA intron endonuclease, catalytic C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.1   1.7e-26   1.6e-22       3      78 ..     264     339 ..     262     347 .. 0.96

  Alignments for each domain:
  == domain 1  score: 79.4 bits;  conditional E-value: 1.7e-26
                    HHHHHHHHHHHTT-EEEECGGGTSSEEEETSCTTTSSCSEEEEEEETTSEEEHHHHHHHHHHHHHTTSEEEEEEET CS
  tRNA_int_endo   3 lkyavyrdLrekGyvvrsGlkFGadFrvYqrrpslehseylVvvvsedeeldwpdlsaavrlahsvkKklilaivd 78 
                    ++y+ y+++r++G++vrsG+kFG+d+++Y+r+p ++h+e+++v+++  ++ d +  s+ +r++ + +K+l+l++v+
     CCD26054.2 264 IQYVSYHHYRSHGWCVRSGIKFGCDYLLYKRGPPFQHAEFCIVTMDAHTTKDYTWYSSIARVCGGARKTLVLCYVE 339
                    789***********************************************************************95 PP

>> tRNA_int_endo_N  tRNA intron endonuclease, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.044     4e+02       9      29 ..      64      84 ..      63     117 .. 0.85
   2 ?    9.0   0.0   0.00012       1.1      20      50 ..     204     233 ..     187     241 .. 0.76

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.044
                     EEEESSHHHHHHHHHTTT-SE CS
  tRNA_int_endo_N  9 rvlvedeeaakrlyekgfYGk 29
                     r+lv+d+ +   l ++gf+G 
       CCD26054.2 64 RILVKDDVQMLYLWDNGFFGT 84
                     67899888888899*****97 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00012
                      HHHHTTT-SEECCTSSEEEEHHHHHHHHHT.T CS
  tRNA_int_endo_N  20 rlyekgfYGkplidepLqLslvEAlYLlek.G 50 
                      +l + +  G+ +  e L+L +vEA++L+ +  
       CCD26054.2 204 ELIDGN--GNIKQLEALELMPVEAIFLTFAlP 233
                      555555..77788899***********98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       877  (0.0489152); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2806.49
//
Query:       CCD26055.2  [L=132]
Description: hypothetical protein NDAI_0G02780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   13.0   0.5       0.16   12.4   0.5    1.3  1  DUF4014   Protein of unknown function (DUF4014)


Domain annotation for each model (and alignments):
>> DUF4014  Protein of unknown function (DUF4014)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.5   8.7e-06      0.16      13      36 ..       4      27 ..       2      46 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.7e-06
     DUF4014 13 srfkealffplflilmvpispi..ff 36
                 rfk ++f+p+fli  v isp+  ff
  CCD26055.2  4 KRFKSSFFLPFFLI--VSISPVvgFF 27
                59**********98..6788873344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       720  (0.0401584); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 952.24
//
Query:       CCD26056.2  [L=318]
Description: hypothetical protein NDAI_0G02790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.9e-28   97.7   1.4    4.6e-28   97.0   1.4    1.3  1  dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-
    1.6e-17   63.5   1.1    1.7e-16   60.2   0.2    2.2  2  MafB19-deam      MafB19-like deaminase
  ------ inclusion threshold ------
      0.024   14.8   0.7      0.059   13.5   0.2    2.0  2  SNAD4            Secreted Novel AID/APOBEC-like Deaminase 4
        0.1   12.7   0.2       0.17   12.0   0.2    1.4  1  DUF2433          Protein of unknown function (DUF2433)
        0.2   11.5   1.9       0.31   10.9   1.1    1.9  1  APOBEC_N         APOBEC-like N-terminal domain


Domain annotation for each model (and alignments):
>> dCMP_cyt_deam_1  Cytidine and deoxycytidylate deaminase zinc-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   1.4   1.3e-31   4.6e-28       2     100 ..     168     284 ..     167     285 .. 0.96

  Alignments for each domain:
  == domain 1  score: 97.0 bits;  conditional E-value: 1.3e-31
                      HHHHHHHHHHHHHHHHHHTTTSCSEEEEEEETTEEEEEEESBHHCCTG.....................TTB-HHHHHHHHHHHHTSSCETTEE CS
  dCMP_cyt_deam_1   2 ekdekllelalkaakeaqkcsnfkVGavivkngeiistgyngepaggs.....................ktiHAEvnAilkaaknggsklegat 74 
                      ++d ++++la +aa+++ +c++ kVG+viv+++++i+tgyng+p++ +                      ++HAE nA+l+a++  ++ + +at
       CCD26056.2 168 SWDTYFMKLATLAATRS-NCMKRKVGCVIVRDHRVIATGYNGTPRHLTncfnggcdrcndggsknlntcLCLHAEENALLEAGRD-RVGF-NAT 258
                      79***************.*****************************************************************99.5556.79* PP

                      EEEEE--BHHHHHHHHHHT-SEEEEE CS
  dCMP_cyt_deam_1  75 lyvtlePCsmCakaiiqsgikkvvvg 100
                      ly+ ++PC +C+  i+qsgi +vv+ 
       CCD26056.2 259 LYCDTCPCLTCSVKIVQSGITEVVYS 284
                      ************************96 PP

>> MafB19-deam  MafB19-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.048   1.7e+02      97     122 ..      90     118 ..      74     151 .. 0.72
   2 !   60.2   0.2   4.7e-20   1.7e-16       2     103 ..     168     287 ..     167     312 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.048
  MafB19-deam  97 lvygagnpks....lnkLkvkekngrvelv 122
                    + ++ +++    +n+++++e+n+++ l+
   CCD26056.2  90 TSKDLSPEDAlaaiMNEMSLEESNHEY-LE 118
                  333333333377789**********99.55 PP

  == domain 2  score: 60.2 bits;  conditional E-value: 4.7e-20
  MafB19-deam   2 dkekafrkalaevekatkikedkigavivkdkkviargsn.....................ekelnakataHaEiaalqqAakklkskrlddatlyvt 78 
                  +++ +f+k + ++  ++++ ++k+g+viv d++via+g+n                      k+ln     HaE +al  A   + +    +atly +
   CCD26056.2 168 SWDTYFMKLATLAATRSNCMKRKVGCVIVRDHRVIATGYNgtprhltncfnggcdrcndggSKNLNTCLCLHAEENALLEA---GRDRVGFNATLYCD 262
                  5899***************************************************************************99...55666669****** PP

  MafB19-deam  79 lepCdmCagaivqaglkklvygagn 103
                    pC  C   ivq+g+ ++vy   +
   CCD26056.2 263 TCPCLTCSVKIVQSGITEVVYSQTY 287
                  ********************97654 PP

>> SNAD4  Secreted Novel AID/APOBEC-like Deaminase 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.8   6.4e+03      83     103 ..      45      65 ..      38      70 .. 0.56
   2 ?   13.5   0.2   1.6e-05     0.059      22      62 ..     235     275 ..     219     303 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.8
       SNAD4  83 eeenregLrsLakagvkvkim 103
                  ++++e+L  L ++   ++++
  CCD26056.2  45 TKHYKENLIMLTNDLYLITVL 65 
                 455666666666655555554 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.6e-05
       SNAD4  22 e...haEllflekikseldpsqeyrvtwylswsPCaeCaekiae 62 
                 +   haE + l +     + ++ ++ t+y  ++PC +C+ ki++
  CCD26056.2 235 ClclHAEENALLEA---GRDRVGFNATLYCDTCPCLTCSVKIVQ 275
                 24579998887777...4678899***************99986 PP

>> DUF2433  Protein of unknown function (DUF2433)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   4.6e-05      0.17       4      66 ..     103     167 ..     100     191 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.6e-05
     DUF2433   4 syNefsvnpsleayrsklakskakfaev...wetvkkeveaaideaqrklLenalevvekiPtiak 66 
                 + Ne+s+++s  +y +  +k++ kf+ v   w tv+k + ++++ +q + L+   + +e++P  + 
  CCD26056.2 103 IMNEMSLEESNHEYLELYEKAHIKFKLVgkdWATVEKRLIKVVK-EQIEQLQVKKNPFENVPPLRP 167
                 78***********************9887779999999966665.577889999999999998766 PP

>> APOBEC_N  APOBEC-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.1   8.7e-05      0.31      47      95 ..     237     276 ..     159     309 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.7e-05
                 TBCHHHHHHHHHHHHT--.TTEEEEEEEEESS-S-HH....HHHHHHHH CS
    APOBEC_N  47 skHaEelflediedqelrepkkkyeitlYvswsPChessdeCaeklaaf 95 
                   HaEe  l +     + + +  ++ tlY+ ++PC +    C++k+++ 
  CCD26056.2 237 CLHAEENALLE-----AGRDRVGFNATLYCDTCPCLT----CSVKIVQS 276
                 57888875553.....2334677999***********....****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       991  (0.0552736); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2387.98
//
Query:       CCD26057.2  [L=379]
Description: hypothetical protein NDAI_0G02800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.7e-18   64.7  25.3    3.5e-11   42.6  13.5    2.7  3  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin
  ------ inclusion threshold ------
       0.96    7.8   6.4        1.5    7.2   6.4    1.2  1  Herpes_pp85     Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCM


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6  13.5   3.9e-15   3.5e-11       6     175 ..      18     181 ..      11     188 .. 0.83
   2 !   30.5   0.5   1.9e-11   1.7e-07     237     319 ..     194     274 ..     178     282 .. 0.82
   3 ?   -1.7   0.4      0.12   1.1e+03      13      47 ..     317     355 ..     297     376 .. 0.49

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 3.9e-15
  Hyphal_reg_CWP   6 alalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitstssllalsvtlasatgsieNnGiivfnseesltass 100
                     ++ + l+is+ t  ++  +++ gd+t+n g+++ i+++   ++++  ++ nng+l++++t++  ++s++   + ++i+N+G +++++e+s  +s+
      CCD26057.2  18 TSSALLQISSVTLLDDIRTVS-GDITVNAGSSFMITHDFELTIES-GTIANNGTLCVSTTDTVSEMSLN--IVAKNINNKGNLIIDNEDSGDKST 108
                     333445699999999999999.*********************99.5*******************999..788**************9999777 PP

  Hyphal_reg_CWP 101 yklvgasFeNnGelylagsgsvvastmeitsnsweNnGlivfyqsqrssgtvklg..aalgsitNdGqIclknqayq 175
                     +  + +s++N G  yl+ + + +++ ++++++ +  nG+i + + ++   +++++  +   +++N+G+  ++ ++++
      CCD26057.2 109 MVTI-GSLNNGG--YLRMNLKDNTEYLSVQAS-LIDNGYISLCHINNYYDKLTFKkySRVDDMQNTGTTDVSGTNVT 181
                     6554.689****..556555556999999965.5566*****************9545559******9877776665 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 1.9e-11
  Hyphal_reg_CWP 237 gnkigltlpllglvlssisYdsdtgiLtlralllsqkFnIGtGYdsskFe.ivtdagagllsvqngavtYngpvPs..rslPsaCq 319
                     g +++++ ++     +  sYd  tgi+t ++ + + + +IG+GYd+s+F+     + + l +++  +++Y g  P+  +++P++C+
      CCD26057.2 194 GQVLEFNSTV-----TYPSYDPVTGIVTTTNRYGTFRIDIGLGYDASNFSdAQIRTCEYLGTCYAPYLRYLGVKPAaaTERPTECA 274
                     4566666664.....6679***********99889**************8566666677779*************988899****8 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.12
  Hyphal_reg_CWP  13 isentvdrgainlgi..gdltIn..sgaylsiinnalsa 47 
                     ++++tv++ga ++++  g+  ++  s  y+s ++++++ 
      CCD26057.2 317 VTQHTVSKGASSTTNdnGQCVVTeiSTEYFSTLHTTTYF 355
                     444444444444442112222221122333333333333 PP

>> Herpes_pp85  Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.4   0.00016       1.5     463     517 ..     272     325 ..     248     332 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.00016
  Herpes_pp85 463 eitegrdlfadvfrrpvtdaaasssassssssasPnsvslpsdrssstrtrvPas 517
                  e + + dl   +    v ++ asss+s+sss   P   s+    s+ t+++v   
   CCD26057.2 272 ECAVKPDLSMAICSAAVSSSVASSSHSTSSSISVPAT-SIEPTSSAVTQHTVSKG 325
                  5666678888899999************998888877.88888888888887644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       860  (0.047967); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2979.03
//
Query:       CCD26058.2  [L=589]
Description: hypothetical protein NDAI_0G02810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    0.00035   20.9   3.7    0.00035   20.9   3.7    2.5  2  DUF5364     Family of unknown function (DUF5364)
  ------ inclusion threshold ------
      0.064   13.1   0.0       0.17   11.7   0.0    1.7  1  CAMSAP_CC1  Spectrin-binding region of Ca2+-Calmodulin
        1.9    8.6   5.9       0.39   10.9   0.6    2.3  2  PixA        Inclusion body protein


Domain annotation for each model (and alignments):
>> DUF5364  Family of unknown function (DUF5364)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.4      0.28   1.7e+03     144     155 ..     256     267 ..     232     286 .. 0.46
   2 !   20.9   3.7   5.8e-08   0.00035      51     128 ..     448     530 ..     429     550 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.28
     DUF5364 144 sekskeekksae 155
                 +++++e+ ++ +
  CCD26058.2 256 EQEEEENDNEDS 267
                 111111111111 PP

  == domain 2  score: 20.9 bits;  conditional E-value: 5.8e-08
     DUF5364  51 lpsNedRYhedvalafddledeeknaevnkklkevlkereeee.....eaekedaakskealtkkdLesmdvkeLNklLgrkv 128
                 ++ N +   ed a+a dd  d+ +++++ +++k+ +++ +        ++  ++++++k++  k dL+  d++ LN+lL+ ++
  CCD26058.2 448 VNTNVNTAVEDAATADDDDDDDDQYEDIDETVKQGIRQEQRIPkviprTKPPKKNKNKKKKQHKNDLSGFDIDTLNQLLNVTK 530
                 55677777899************************999883225688755566666668888999**************8765 PP

>> CAMSAP_CC1  Spectrin-binding region of Ca2+-Calmodulin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   2.9e-05      0.17      10      27 ..     532     549 ..     527     553 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.9e-05
  CAMSAP_CC1  10 selaselselrlkLEEKR 27 
                    +se ++l++k EEKR
  CCD26058.2 532 TLIGSEFNNLGMKIEEKR 549
                 5679*************9 PP

>> PixA  Inclusion body protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.6   6.6e-05      0.39      17      67 ..     229     279 ..     226     283 .. 0.92
   2 ?   -1.1   0.6      0.32   1.9e+03      10      58 ..     390     438 ..     389     441 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.6e-05
                 H-SS-B--TTS-EE--CCCEEEEEEGGCTB--TTCTTEEEEEETT-EEEEE CS
        PixA  17 dypnpskdpnkPtsidhqyiymlargdnvksgqgeseLsvkakvgDvirwr 67 
                 +yp++ k++ +Pt+++++++ ++  +++ + +++++e s +a+ +D ++++
  CCD26058.2 229 YYPTTAKQQGSPTVQQKEHVIIIDDDEEQEEEENDNEDSRTASTNDHVSMV 279
                 689999*****************99999999***************99875 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.32
                 -HHHHHHH-SS-B--TTS-EE--CCCEEEEEEGGCTB--TTCTTEEEEE CS
        PixA  10 DadtIledypnpskdpnkPtsidhqyiymlargdnvksgqgeseLsvka 58 
                 D+d++ e+  + s ++++  +i  +  y+     nv + q +++++v+ 
  CCD26058.2 390 DTDKVNEYKVDDSNNDQEDDVIHYDETYLSRPLPNVPQPQRDETIKVNY 438
                 7888877777889999999999999999999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1162  (0.0648112); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 4212.59
//
Query:       CCD26059.2  [L=451]
Description: hypothetical protein NDAI_0G02820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.6e-42  143.2   1.1    5.6e-42  143.2   1.1    3.3  3  Nuf2            Nuf2 family
    0.00051   20.1  15.2    0.00051   20.1  15.2    4.2  4  DHR10           Designed helical repeat protein 10 domain
  ------ inclusion threshold ------
      0.018   15.1  15.4      0.018   15.1  15.4    3.7  3  CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein C
        1.5    9.3  36.4        0.3   11.5  16.8    2.5  2  Fez1            Fez1
        2.8    6.7  45.4       0.01   14.7  18.0    3.1  3  Spc7            Spc7 kinetochore protein
        4.9    7.3   7.4       0.55   10.3   0.3    2.9  4  Cyclin_C        Cyclin, C-terminal domain


Domain annotation for each model (and alignments):
>> Nuf2  Nuf2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   1.1   1.9e-45   5.6e-42       1     139 []       3     143 ..       3     143 .. 0.91
   2 ?   -0.7   0.0      0.47   1.4e+03     118     134 ..     210     226 ..     200     229 .. 0.88
   3 ?   -1.7   3.0      0.98   2.9e+03      77      77 ..     276     276 ..     211     445 .. 0.69

  Alignments for each domain:
  == domain 1  score: 143.2 bits;  conditional E-value: 1.9e-45
        Nuf2   1 kdsfplldvreIvaclqelgfe.vteedlakPtpefvqklyeqfleilmgiseedieqaaraaleeleepel.yedslpllillrslkrflkacgvedF 97 
                 +d+fp+ld +e+v clq+++f+ +te+++++Pt+efv ++y+q++e++mgis ++  + +  + +   +++   +  lp+li+ + +++f++++gv dF
  CCD26059.2   3 HDIFPILDITELVICLQSCDFSiATEDQISRPTAEFVMTIYKQIIENFMGISVDSALRTDGVLPKDAPNEDFnNDGLLPTLIMTKICYKFFQNVGVADF 101
                 689****************************************************656555555534444444788899******************** PP

        Nuf2  98 slsDllkPdpkRtrriLSaliNFirFreerseifeelleeae 139
                 +l Dl+kPd++Rt+r+LSa+iN++rFreer+ ++++++ ++e
  CCD26059.2 102 TLLDLTKPDHQRTVRLLSAVINYARFREERMFDCNKFITQME 143
                 *************************************99876 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.47
        Nuf2 118 iNFirFreerseifeel 134
                 iN+ +++ e+++i++el
  CCD26059.2 210 INYSNYKSEKQKILKEL 226
                 9**********999886 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.98
        Nuf2  77 p 77 
                 +
  CCD26059.2 276 R 276
                 1 PP

>> DHR10  Designed helical repeat protein 10 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   8.9      0.18   5.4e+02      58     103 ..     155     200 ..     110     209 .. 0.49
   2 ?   -0.5  15.5       0.4   1.2e+03       9      99 ..     182     277 ..     178     280 .. 0.85
   3 !   20.1  15.2   1.7e-07   0.00051       4     117 .]     265     380 ..     262     380 .. 0.88
   4 ?   -2.5   0.0       1.8   5.3e+03      10      25 ..     405     420 ..     404     424 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.18
       DHR10  58 klkelrdaleekeielrelerkeerlqrqlenaeeklerlreqaee 103
                 + + l+++++e e+e + l++  +  ++ l++ ee    l++q ++
  CCD26059.2 155 DYNLLQQQMKEYEEEINILDAGDDNGTKELNKLEENNKNLENQLKK 200
                 4444444444444444444444444444444444443333333322 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.4
       DHR10   9 eelaelErkarelqakidalqvvekdlr....sciklleeieaelakleeakkklkelrdaleek.eielrelerkeerlqrqlenaeeklerlre 99 
                 +el++lE+++++l+++++ l++v++ l+    +     ++i +el++l  +  +l+++rd+le+  +i+ +el+++ e l + len+e+ l+ lr 
  CCD26059.2 182 KELNKLEENNKNLENQLKKLTQVQETLSinysNYKSEKQKILKELESLGFQIVELESQRDKLENYtNIDIEELNTTVEDLSKILENKEKVLQNLRI 277
                 78999****************9999885222266667788999*******************98526799*******************9999985 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 1.7e-07
       DHR10   4 laeekeelaelErkarelqakidalqvvekdlrsciklleeieaelakleeakkklkelrdaleekeielre.....lerkeerlqrqlenaeeklerl 97 
                 l+++ + l++l  k+++l++ki +++++ ++l  +++l   i++e++    ++ +l + +++l e++ +l++     +  k   l+ ql+  +e++++ 
  CCD26059.2 265 LENKEKVLQNLRIKQKNLETKITTFEKISTELYDILRL---ISTEVQNSHGTQVNLIDIQNQLLENRDKLQDilsnaVLLKSNVLKEQLKDQREQFNKF 360
                 889999999*********************98766665...7899999999************9999998872222245688999************** PP

       DHR10  98 reqaeekreaakarleelre 117
                 +e+ +ek +++k rleel++
  CCD26059.2 361 TEDYDEKSNENKLRLEELQQ 380
                 ******************97 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.8
       DHR10  10 elaelErkarelqaki 25 
                 e++ lE+ +r++q k 
  CCD26059.2 405 EVKLLEKEIRDIQLKF 420
                 5778999999999875 PP

>> CENP-F_leu_zip  Leucine-rich repeats of kinetochore protein Cenp-F/LEK1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1  15.4   5.9e-06     0.018       8     109 ..     145     246 ..     136     250 .. 0.93
   2 ?    5.0   3.4    0.0079        24      95     120 ..     250     281 ..     245     300 .. 0.59
   3 ?   -8.1  14.4         6   1.8e+04       7     102 ..     326     427 ..     320     436 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5.9e-06
  CENP-F_leu_zip   8 vlekLKeserkadsLkdkvenLerelemseenqekvileaEtskaevetlkeeieelaeelreleldLvalrsekeeLekelqkkqervseLesl 102
                     +l++L+    + ++L+++ ++ e e++++++  ++ + e  +  +  ++l++++++l++  + l+++ ++ +sek+++ kel+    ++ eLes 
      CCD26059.2 145 LLSELRSKFDDYNLLQQQMKEYEEEINILDAGDDNGTKELNKLEENNKNLENQLKKLTQVQETLSINYSNYKSEKQKILKELESLGFQIVELESQ 239
                     56777777888889********************************************************************************* PP

  CENP-F_leu_zip 103 nsslenl 109
                     + +len 
      CCD26059.2 240 RDKLENY 246
                     9999985 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0079
  CENP-F_leu_zip  95 rvseLeslnsslenlleekEqe......kvqm 120
                      ++eL+++ ++l+++le+kE+       k + 
      CCD26059.2 250 DIEELNTTVEDLSKILENKEKVlqnlriKQKN 281
                     57788888888888888888764433222222 PP

  == domain 3  score: -8.1 bits;  conditional E-value: 6
  CENP-F_leu_zip   7 hvlekLKeserkadsLkdkv..enLerelemseenqekvileaEtskaevetlkeei.eelaeelreleldLva..lrsekeeLekelqkkqerv 96 
                     + ++kL+ + ++a +Lk  v  e+L+ + e+ ++  e+      ++k  +e+l+++  +e+  +lre e  ++   +  e + Leke+++ q + 
      CCD26059.2 326 ENRDKLQDILSNAVLLKSNVlkEQLKDQREQFNKFTEDYDEKSNENKLRLEELQQQFsKEIIPKLRETENHIQRdlIDGEVKLLEKEIRDIQLKF 420
                     55677777778888888887555677777777777788888888888888888887524677777777766653326677777777777777776 PP

  CENP-F_leu_zip  97 .seLesl 102
                      +eL+s+
      CCD26059.2 421 nEELDSI 427
                     2346655 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  16.8    0.0001       0.3      18     158 ..     141     289 ..     138     295 .. 0.82
   2 ?    3.1  11.5     0.039   1.2e+02      16     100 ..     321     417 ..     316     433 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.0001
        Fez1  18 QLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsleeeeaale 116
                 Q+    +e+ +k +++  l+ q++e +++++  ++  ++  ++l++ +++++++en+l++ ++ +e+l+ + +++++e +++ +el++l  +  e  le
  CCD26059.2 141 QMETLLSELRSKFDDYNLLQQQMKEYEEEINILDAGDDNGTKELNKLEENNKNLENQLKKLTQVQETLSINYSNYKSEKQKILKELESLGFQIVE--LE 237
                 66666789999**********************************************************************99999997766555..57 PP

        Fez1 117 sdeakaqrqeaeeleelkreverlra..........eLkeerqkkeeqassF 158
                 s++ k ++ ++ ++eel+ +ve l +          +L+ ++++ e++ ++F
  CCD26059.2 238 SQRDKLENYTNIDIEELNTTVEDLSKilenkekvlqNLRIKQKNLETKITTF 289
                 7777788888889999999999998844444444445666666666665555 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.039
        Fez1  16 KqQLkdsqaevtqklseivalkaqlrelrakleekeeeikeleesleektlelevcenelqrk..............kseaellrekvekleeelkelr 100
                  +QL + +  +   ls+ v lk+++  l+++l+++ e+ +++ e ++ek++e++   +elq++              + + +l++ +v+ le+e+++++
  CCD26059.2 321 QNQLLENRDKLQDILSNAVLLKSNV--LKEQLKDQREQFNKFTEDYDEKSNENKLRLEELQQQfskeiipklretenHIQRDLIDGEVKLLEKEIRDIQ 417
                 5688888888888888889999886..788899999999999999999998877777777777554466666644444444444445555555555444 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.9    0.0012       3.5     216     283 ..     136     199 ..     126     214 .. 0.66
   2 ?   14.7  18.0   3.5e-06      0.01     142     241 ..     185     291 ..     182     303 .. 0.65
   3 ?   -2.8  14.5      0.74   2.2e+03     152     236 ..     319     401 ..     301     431 .. 0.55

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0012
        Spc7 216 eekkkelaelqeqleeleekieelkeqkseleeeiaeaervleeckgwsesevsrlkeevkaleeltg 283
                 +++ +++++l ++l ++ ++ + l++q++e+eeei+    +l++  +  ++e+++l+e+ k+le++++
  CCD26059.2 136 NKFITQMETLLSELRSKFDDYNLLQQQMKEYEEEIN----ILDAGDDNGTKELNKLEENNKNLENQLK 199
                 555566666666666666667777777777777777....8888888888888888888888888765 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 3.5e-06
        Spc7 142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqe.......aaeelesidkeeLeelreelaelkaeieekkkelaelqeqleele 233
                 ++leen ++le++ ++L++ +e l+  + ++++ek+++ +ele+l         ++++le++++ ++eel  ++++l++ +e+k+k l++l+ + ++le
  CCD26059.2 185 NKLEENNKNLENQLKKLTQVQETLSINYSNYKSEKQKILKELESLGFqivelesQRDKLENYTNIDIEELNTTVEDLSKILENKEKVLQNLRIKQKNLE 283
                 567888888888888888888888888888888888777777777662222222566666666666666666666666666666666666666666666 PP

        Spc7 234 ekieelke 241
                 +ki++ ++
  CCD26059.2 284 TKITTFEK 291
                 66665544 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.74
        Spc7 152 eedkelLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleeki 236
                 + +++lLe++ ++ d l +++  + + l+e+l++++e+ +++++   e+ +e + +l+el+++ +  k+ + +l+e  ++++ ++
  CCD26059.2 319 DIQNQLLENRDKLQDILSNAVLLKSNVLKEQLKDQREQFNKFTEDYDEKSNENKLRLEELQQQFS--KEIIPKLRETENHIQRDL 401
                 44555555555555555556666667778888888876666666556666666666666666665..444444444433333333 PP

>> Cyclin_C  Cyclin, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.5   4.6e+03      68      89 ..     121     142 ..     111     162 .. 0.79
   2 ?   -1.6   0.0      0.92   2.7e+03      79     108 ..     201     218 ..     184     236 .. 0.51
   3 ?   10.3   0.3   0.00018      0.55      62     109 ..     237     285 ..     228     295 .. 0.69
   4 ?   -1.5   0.1      0.87   2.6e+03      74      95 ..     345     372 ..     323     389 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.5
                 HHHHC---HHHHHHHHHHHHHH CS
    Cyclin_C  68 lehytgyskedlkpcvelilel 89 
                 + +y ++ +e++ +c + i ++
  CCD26059.2 121 VINYARFREERMFDCNKFITQM 142
                 6788888999999998888765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.92
                 HHHHHHHHHHHHHHHHGSS--HHCCCCTCG CS
    Cyclin_C  79 lkpcvelilellssapssklqavrrkysss 108
                 l +++e +  ++s+++s            +
  CCD26059.2 201 LTQVQETLSINYSNYKS------------E 218
                 22222222222222222............2 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00018
                 --S-HHHHHHC---HHHHHHHHHHHHHHHHHHHGSS-..-HHCCCCTCGG CS
    Cyclin_C  62 pewtetlehytgyskedlkpcvelilellssapsskl..qavrrkysssk 109
                 ++  ++le+yt ++ e+l+  ve + + l  ++++ l    +++k   +k
  CCD26059.2 237 ESQRDKLENYTNIDIEELNTTVEDLSKILE-NKEKVLqnLRIKQKNLETK 285
                 555699***********************4.4444550245555554555 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.87
                 --HHHHHHHHHHHHHHH......HHHHG CS
    Cyclin_C  74 yskedlkpcvelilell......ssaps 95 
                 + ke+lk+  e+ +++       s++++
  CCD26059.2 345 VLKEQLKDQREQFNKFTedydekSNENK 372
                 4466777777777776654443223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2658  (0.148251); expected 358.6 (0.02)
Passed bias filter:                      517  (0.028836); expected 358.6 (0.02)
Passed Vit filter:                        97  (0.00541023); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.13u 0.32s 00:00:01.45 Elapsed: 00:00:00.51
# Mc/sec: 2640.57
//
Query:       CCD26060.2  [L=574]
Description: hypothetical protein NDAI_0G02830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.1e-65  217.3   4.7    1.7e-64  216.2   4.7    1.6  1  DUF592        Protein of unknown function (DUF592)
    4.6e-62  209.1   0.0    1.3e-61  207.6   0.0    1.8  2  SIR2          Sir2 family
     0.0016   18.2   0.0       0.99    9.1   0.0    2.4  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain


Domain annotation for each model (and alignments):
>> DUF592  Protein of unknown function (DUF592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.2   4.7   2.9e-68   1.7e-64       2     153 .]      85     239 ..      84     239 .. 0.93

  Alignments for each domain:
  == domain 1  score: 216.2 bits;  conditional E-value: 2.9e-68
      DUF592   2 lvpkkpekpiilgkdsksgkyvlpeitkedslnarlfLKkyglkkFldkYLPeelnslyiyelIklLGFelkdkellnaiskvvevead...seekvek 97 
                 l+p +p +pi+lgkd+k +ky+lp+itkedslnar+ LK+yglkkFld+YLPeelnsly+y lIklLGFe+kd+elln+i+++++ +++   ++ ++  
  CCD26060.2  85 LIPLIPPQPIVLGKDPKANKYILPKITKEDSLNARMVLKYYGLKKFLDTYLPEELNSLYVYFLIKLLGFEIKDRELLNTIYEFINQDMNmtiDNMSLAI 183
                 5788999*****************************************************************************965551123445566 PP

      DUF592  98 eeleDpLekkeivrlikdLqkainkvlstrlrlsnfstidhfvdklkkakkilVlt 153
                 ++++DpLekk++vrlikdLqkainkvl+trlrlsnf+t+dhfv+ lk++k+ilVlt
  CCD26060.2 184 QKFDDPLEKKQAVRLIKDLQKAINKVLCTRLRLSNFYTVDHFVNALKTSKRILVLT 239
                 *******************************************************9 PP

>> SIR2  Sir2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       0.8   4.8e+03      73     109 ..     176     213 ..     157     231 .. 0.68
   2 !  207.6   0.0   2.1e-65   1.3e-61       1     177 []     240     458 ..     240     458 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 0.8
                 TCEEEEEES-SSS.HHHHTT-SSEEETTEEEEEEEETT CS
        SIR2  73 gkllrliTQNiDg.LekkaGskkvvelHGslakakcvk 109
                  ++++l  Q  D+ Lekk  ++ + +l   ++k+ c++
  CCD26060.2 176 IDNMSLAIQKFDDpLEKKQAVRLIKDLQKAINKVLCTR 213
                 45555666666544888888888888888888887775 PP

  == domain 2  score: 207.6 bits;  conditional E-value: 2.1e-65
                 -GGGGGGGT---SSSTTSHHHHSCHHHHSSHHHHHHHHHHHHH..HHHHHHHHHHCCTSS--HHHHHHHHHHHTTCEEEEEES-SSSHHHHTT-S..SE CS
        SIR2   1 GAGiStesGipdfRskeGlyaklakeelaspealfskkllvee..vfyniarellaeeaepnaaHkalkklekkgkllrliTQNiDgLekkaGsk..kv 95 
                 GAG+St++GipdfRs+eG+y+++++ +l++p+++f++++++++  vfynia+++l++++ ++++H+++k l++k+kllr++TQNiD+Le++aG++  ++
  CCD26060.2 240 GAGVSTSLGIPDFRSSEGFYSRIRHLGLDDPQDVFNYDIFMQDpsVFYNIAHMVLPPDNLYSPLHSFIKLLQDKNKLLRNYTQNIDNLESNAGIQeeNL 338
                 9*********************************************************************************************999** PP

                 EETTEEEEEEEETTTSBEEECCGGHCHHHCCTT.B-TTTCC...................................BEEEEE--CT..SB-SHHHHHHH CS
        SIR2  96 velHGslakakcvkcekkldkeelqeeieaekvpecekcgk...................................llkpdvvfFG..ealpdklkkli 157
                 v++HGs+a+a+cv+c++k+ +e+++++i++ ++p c++c+k                                   +lkpd++ F    +lp+k++++i
  CCD26060.2 339 VQCHGSFATASCVTCHWKVPGEKIYDNIRKLELPLCPYCYKkrreyfpnnntkfssnsmtdltnnhfagqvlksygVLKPDITIFXvvKSLPSKFHRTI 437
                 *************************************************************************************7447999******* PP

                 H.HHHH-SEEEEES--STSTT CS
        SIR2 158 e.kveeadlllviGtSlkVap 177
                 + ++ ++dll++iGtSlkVap
  CCD26060.2 438 KeDILKCDLLICIGTSLKVAP 458
                 99*****************98 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0011       6.6       1      25 [.     222     246 ..     222     253 .. 0.88
   2 !    9.1   0.0   0.00017      0.99      68     131 ..     434     497 ..     423     502 .. 0.67

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0011
                   HHHHHHHHHH-SSEEEEE-CHHCHT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvars 25 
                   +++ +++lk++kr+++l G gv++s
    CCD26060.2 222 VDHFVNALKTSKRILVLTGAGVSTS 246
                   57889*****************976 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00017
                   CHHHHHHHHH-SEEEEES-SSSTCCCTTTTTTTTTT-.EEEEEESSCCCCTTCC--SEEEECTHH CS
  TPP_enzyme_M  68 skaanealeeaDlvlalGarfddirttgsepefapea.kiihididpaeigknyqvdlaivgdvk 131
                   +++ +e + ++Dl++++G+ ++    +++  ++ p     i i+ dp          l+ + dv+
    CCD26060.2 434 HRTIKEDILKCDLLICIGTSLKVA-PVSEIVNMVPAHvPQILINRDPVRHAEFDVNMLGFCDDVA 497
                   6677888999**********9884.4455555555555668888888665554433355555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       960  (0.0535445); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.28s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3892.38
//
Query:       CCD26061.2  [L=427]
Description: hypothetical protein NDAI_0G02840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.8e-33  115.3   0.0    5.3e-33  114.4   0.0    1.5  1  PseudoU_synth_2  RNA pseudouridylate synthase
  ------ inclusion threshold ------
       0.17   11.9   0.1       0.66   10.0   0.1    2.0  1  PQQ              PQQ enzyme repeat


Domain annotation for each model (and alignments):
>> PseudoU_synth_2  RNA pseudouridylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.4   0.0   5.9e-37   5.3e-33       2     159 ..     142     290 ..     141     291 .. 0.94

  Alignments for each domain:
  == domain 1  score: 114.4 bits;  conditional E-value: 5.9e-37
  PseudoU_synth_2   2 lvvvnKPagvpvqpeakdgsekekettatssraeeekkelklvhRLDkatsGllllAksseaanklakafeerkvrKkYlalvfgapeeeegai 95 
                      l+v++KP+g+pv+p++     + + +t t+  +e+ +  +++++RLD+ tsGl+ lAk+++ a+ +a +++er+v+K+Y+a v+g+ ++ e ++
       CCD26061.2 142 LLVIDKPSGIPVHPTG-----RFRFNTVTKILEEKYNYVVHPCNRLDRSTSGLMFLAKTPKGADDMAIQLREREVTKEYVARVVGNFPSGEIIV 230
                      79**************.....9**************************************************************99999***** PP

  PseudoU_synth_2  96 kkkiskdtek.qegarrkaeeldgkkavtylkvlksgsseksakvslveleletGrkhQiRvhla 159
                      +k+i   ++k + +a ++  ++d+k+a t++++++++     +++s+v++++ tGr+hQiRvhl+
       CCD26061.2 231 DKPIRSVNRKvSLNAVCDITDEDAKNAKTIFEKISYD-----GQTSVVKCKPLTGRTHQIRVHLQ 290
                      ****99644414467788999****************.....*********************97 PP

>> PQQ  PQQ enzyme repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   7.3e-05      0.66      15      34 ..     398     417 ..     398     420 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 7.3e-05
                 EETTTCCEEEEEESSSCGSS CS
         PQQ  15 lDadTGkvlWrfktggpvls 34 
                 lD +TG ++W+++t+ p ++
  CCD26061.2 398 LDSTTGMKKWSYRTPLPTWA 417
                 8*************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       724  (0.0403815); expected 358.6 (0.02)
Passed bias filter:                      593  (0.0330749); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 2949.42
//
Query:       CCD26062.2  [L=396]
Description: hypothetical protein NDAI_0G02850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    0.00051   19.6   0.0     0.0014   18.2   0.0    1.7  1  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
  ------ inclusion threshold ------
      0.049   13.7   0.2       0.37   10.8   0.1    2.2  2  Baculo_PEP_C   Baculovirus polyhedron envelope protein, PEP, 


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.6e-07    0.0014       2     233 .]      14     319 ..      13     319 .. 0.59

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 1.6e-07
                    EEEESTGCHHHHTHHHHHHHHHHHHHHC.TT...............SEEEEEEEBSCTCHHHHHHHHH.......................TTCEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx...............xxxxxxxxxxxxxxxxxxxxxx.......................xxxxx RF
  Exo_endo_phos   2 twNvngqaspalgssrrsdrladlltay.da...............DvlgLQEvdddelsriplllal.......................ggflg 58 
                    t N++   sp  +    s ++  ++++  +a               ++ g+QE+ + ++  +p+                           +    
     CCD26062.2  14 TLNCGKI-SPLEN----SINVERIIQHLiPAlkknkdgshliaadiYAFGFQELSMIWEGSLPTVMQSyndilsktiikvlnerfrkdsieY---- 100
                    6677776.67666....556666666664113334445556666669999999665555555555544666666666655555555555541.... PP

                    EEECCH.................................................ECSSSTTSSEEEEEECSTEEEEEEEEEEETSSSSGCEEEEE CS
                    xxxxxx.................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos  59 asstsp.................................................tgggggggnggavlsrfpltslfrrtfiefndlvaalrrep 105
                         +                                                 ++    g+n   +++   l + + +   ++ + + ++++++
     CCD26062.2 101 -----SlvgsdyvgatslvvvcrnslhiekvwrsrtkcgmfgsnlkggvglglalSRDEDEGDNDTFIFVCSHLNANEGYENMQKRCADFTTIINN 191
                    .....0444455555666677777788888888888885544444444444444433333333333333333333333333333333333333333 PP

                    EEEEEEEEEECCCHHGHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTHHSSCESCETTTTTTTTTTTEB-B.. CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Exo_endo_phos 106 laakleqlniashrdhdlvrdlqllalllqvealnadrgapvivaGDfNarpsdddsrvlrtrglalapapvglyllgggptptyvtraggsrl.. 199
                                              + ++ e+l  +++++++++GD+N+r + ++  +++ + l + +                       +l  
     CCD26062.2 192 C-------------------------DRDFKEILEYNKDGHYFFFGDMNFRVNGWEHINTNYNDLNTIE-----------------------TLat 239
                    3.........................455567788888999999******5555555555555555444.......................6699 PP

                    .................................................EEEEEEC.HHHCCEEEEEEECCHHEEC............TSSCSSSB CS
                    .................................................xxxxxxx.xxxxxxxxxxxxxxxxxxx............xxxxxxxx RF
  Exo_endo_phos 200 .................................................Drilasp.alalfrsgvlppplalvrr............ealtlSDH 233
                                                                     Dr+l+++ +        +                     ++l ++DH
     CCD26062.2 240 kydelqevlksvdsfkrfdeaeitfpptykyeiigdknkfnkkrspswcDRVLFKKyN--------G--------KpriisyhsiertQDLQFTDH 319
                    9999999999999999999999999999999999999999999999999*****9722........2........222222233555567777777 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.11   9.7e+02      33      49 ..     234     250 ..     210     257 .. 0.52
   2 ?   10.8   0.1   4.2e-05      0.37     103     138 ..     333     368 ..     311     370 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.11
  Baculo_PEP_C  33 laqlatlldaietqLna 49 
                   +  lat  d+++++L++
    CCD26062.2 234 IETLATKYDELQEVLKS 250
                   12233333333333332 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 4.2e-05
  Baculo_PEP_C 103 NinstLnnllqalnnldlgalsqeledaldtveeil 138
                    i s L+ llq+l++++ g++s  +e+++dt++ i+
    CCD26062.2 333 TISSPLQQLLQSLEATERGSISVLAEQTIDTIDWIV 368
                   58889***************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       785  (0.0437838); expected 358.6 (0.02)
Passed bias filter:                      584  (0.0325729); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2726.74
//
Query:       CCD26063.2  [L=360]
Description: hypothetical protein NDAI_0G02860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-55  188.2   0.1    2.8e-54  184.5   0.1    1.9  1  Inositol_P  Inositol monophosphatase family


Domain annotation for each model (and alignments):
>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.5   0.1   1.6e-58   2.8e-54       9     270 ..      10     355 ..       4     357 .. 0.88

  Alignments for each domain:
  == domain 1  score: 184.5 bits;  conditional E-value: 1.6e-58
                 HHHHHHHHHHHHHHHTTTSEEEESTTT..CCHHHHHHHHHHHHHHHHHHHHHHHHSTTSEEEHHCHHHHCC............................ CS
  Inositol_P   9 avelaakagevlreefsenelvieeks..kegeedlvtaadeaveelilealaekfpshkilgeetlakge............................ 77 
                 a+++++ka+ +l+++++++ ++++ ++  ++++  +vt  d a++ +i++a++++fp++ ++gee+ +  +                            
  CCD26063.2  10 ATQAVRKAS-LLTKRIQSQVIAHRSSTtiTKSDSSPVTIGDFAAQTIIINAIKANFPQDNVVGEESSDGLDdafvgeilkeihlndqiykdqgyddteg 107
                 667777777.5666665466666666689889999**********************************99**************************** PP

                 .......................CT.SSSSSEEEEEEEEETHHHHHHT-SG-EEEEEEEETTEEEEEEEEET.T.................TTEEECEE CS
  Inositol_P  78 .......................kseltedgltwivDPiDGTknFvrgipqvaVsigllvegkpvlGviaqP.l.................lgqlysaa 135
                                        ++e++++g++w++DPiDGTk+F+rg +q+aV+++l+v+g++++G+i++P l                  g ly a+
  CCD26063.2 108 msftneqfplqsisdvktvlnlgNYEGGDKGRFWCLDPIDGTKGFLRG-EQFAVCLALIVDGVVQVGCIGCPnLklndydtnvkdlpgfesFGYLYRAV 205
                 ************************************************.9**********************6488999*********99999****** PP

                 TTTEEEETC.......EEEEECTTSEGGGTEEEEEESSSSSSHHHHCHHHHHHHCCCCCHEEEBESSHHHHHHHHHHTSTSEEEEEC......EBHHHH CS
  Inositol_P 136 kgkGaflng.......eklplsrappiseallvtlfavssrkdtseasllekvesavsaegvrsvgssalklaavaeGkadaylefg.....rekkWDh 222
                 +g+Gaf++         k+++++ p++++ +++  ++ s+ ++ ++ s ++++++  +      +++s++k++++a+G ad yl+ +     +ek+WDh
  CCD26063.2 206 RGHGAFYSVasnpvdwIKIHVRQLPETKDMISLEGVEKSHSSHDEQ-SQIKSKLGVTKSL----HLDSQVKYCLLAQGLADLYLRLPiklsyEEKIWDH 299
                 ******9988888877667777777777777777666665555555.4444444444444....69********************999********** PP

                 HHHHHHHHHTTEEEEESSSC.......SSSTTSSEEEEES.CHHHHHHHHHHHCCH CS
  Inositol_P 223 AAGeaileeaGGvvtdakge.......grlllargiiaan.qkelaellaaavees 270
                  AG++i++eaGG +td   +       gr+l+++g+ia++ +kel++l+++  +e+
  CCD26063.2 300 GAGNVIVHEAGGFHTDSLDNvpldfgnGRTLKTKGVIASSgPKELHDLVVSISNEV 355
                 ****************************************99****9999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       312  (0.017402); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2810.36
//
Query:       CCD26064.2  [L=991]
Description: hypothetical protein NDAI_0G02870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-50  171.5   0.1    6.4e-49  166.1   0.0    2.3  2  DEAD        DEAD/DEAH box helicase
      1e-23   83.8   0.4      2e-22   79.6   0.0    3.1  3  Helicase_C  Helicase conserved C-terminal domain
    5.9e-18   64.9   6.7    5.9e-18   64.9   6.7    3.5  3  DBP10CT     DBP10CT (NUC160) domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.1   0.0   1.1e-52   6.4e-49       1     172 [.     154     318 ..     154     322 .. 0.96
   2 ?    3.0   0.0     0.013        76      47     104 ..     425     482 ..     360     495 .. 0.81

  Alignments for each domain:
  == domain 1  score: 166.1 bits;  conditional E-value: 1.1e-52
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvd 99 
                 t+iQ+++iplil+++d+++ a+TGsGKT+af++p+++++ ++ +k g +a+i++P+reLa qt+n +k+f k ++lr +l++gg++ +dq   + n++d
  CCD26064.2 154 TPIQRKTIPLILQNRDIVGMARTGSGKTAAFILPMIRKIKTHSSKIGARAVILSPSRELAMQTHNVFKEFSKGTQLRSVLLTGGDSLEDQFGMMMNNPD 252
                 89*************************************7779***************************************************9**** PP

                 EEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 100 ivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkd 172
                 ++++tpgr+++l  + +l+l+++++ V+DEadrl ++gf+d++n++l++l       +++rq++++SATlp++
  CCD26064.2 253 VIIATPGRFLHLKVEMSLDLKSIEYAVFDEADRLFEMGFQDQLNELLASL-------PSNRQTLLFSATLPSS 318
                 ***********998899*********************************.......67789********955 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.013
                 S-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
        DEAD  47 gpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldng.vdivvgt 104
                 ++ +++ +Ptr  +e + + lk ++  i++ +  ++ ++a+++ql +++ g + i+v t
  CCD26064.2 425 EKATILFVPTRHHVEYISQLLKDSGYLISYIY-GTLDQHARKRQLYNFRTGlTSILVVT 482
                 36789999999999998888888888765332.45679**********98899999988 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.28   1.7e+03      11      53 ..     195     241 ..     183     284 .. 0.61
   2 !   79.6   0.0   3.3e-26     2e-22      15     111 .]     424     520 ..     408     520 .. 0.94
   3 ?   -1.1   0.1      0.41   2.4e+03       4      59 ..     667     717 ..     664     741 .. 0.61

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.28
                 HHTTTTSEEEEEESSHH.HHHH....HHHHHHHT...TSTEEEESTTSTHH CS
  Helicase_C  11 kleeeggkilifvntid.rlek....vklllekk...gikvavlhgelpqn 53 
                 +++++g +++i +++++  + +    +k +   +   +++++ l+g  + +
  CCD26064.2 195 HSSKIGARAVILSPSRElAM-QthnvFKEF---SkgtQLRSVLLTGGDSLE 241
                 56788889999999999533.332333333...234467777777754444 PP

  == domain 2  score: 79.6 bits;  conditional E-value: 3.3e-26
                 TTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSSTT CS
  Helicase_C  15 eggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRag 111
                 +++ +++fv+t+ ++e ++ ll+ +g+ + +++g+l q  r++ l +f+ g + +L+ tdva+rG+dip + +Vinf+lp + + +i+r+GRt+Rag
  CCD26064.2 424 SEKATILFVPTRHHVEYISQLLKDSGYLISYIYGTLDQHARKRQLYNFRTGLTSILVVTDVAARGVDIPMLANVINFSLPASSKIFIHRVGRTARAG 520
                 56889**********9877788899**********************************************************************97 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.41
                 HHHHHHHHHTTTTSEEEEEESSHH.HHHHHHHHHHHTTSTEEEESTTSTHHHHHHHH CS
  Helicase_C   4 eallellkleeeggkilifvntid.rlekvklllekkgikvavlhgelpqnereeil 59 
                 + l +l +++++++++  f+++ d ++   +++ +++  + a+++   +++er+e l
  CCD26064.2 667 DFLAKL-QNRRNKETVFEFSRNPDdEM---SVFMKRRRRQLAPIQR--KARERKELL 717
                 444444.34555555555555555444...7777777888888887..444444444 PP

>> DBP10CT  DBP10CT (NUC160) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   2.6       2.3   1.4e+04       5      28 ..     397     411 ..     389     416 .. 0.52
   2 ?   -4.3   2.6         3   1.8e+04      12      27 ..     764     776 ..     755     780 .. 0.54
   3 !   64.9   6.7   9.9e-22   5.9e-18       1      65 []     815     875 ..     815     875 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.3
     DBP10CT   5 DeaeelkkkkqakklrWDkKkkky 28 
                 D++++ +k+k         Kk+k+
  CCD26064.2 397 DDNNNNNKNK---------KKRKF 411
                 4444444333.........33333 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 3
     DBP10CT  12 kkkqakklrWDkKkkk 27 
                 ++++ kk   DkK+kk
  CCD26064.2 764 QENKSKK---DKKSKK 776
                 2233333...777777 PP

  == domain 3  score: 64.9 bits;  conditional E-value: 9.9e-22
     DBP10CT   1 DLtgDeaeelkkkkqakklrWDkKkkkyVkrtnkdedgskkirtESGvkiaasfksgrYdkWkkk 65 
                 DL++D++ +++k++ + k  WDkK+kkyV++++   d++k+i +E G+kiaasf+sg++d+W kk
  CCD26064.2 815 DLNNDDKVQVHKQTAMVK--WDKKRKKYVNTQG--LDNKKYIIGEGGQKIAASFRSGKFDEWAKK 875
                 9******99998777777..**********877..7789***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (991 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1756  (0.0979419); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.84u 0.29s 00:00:01.12 Elapsed: 00:00:00.45
# Mc/sec: 6660.25
//
Query:       CCD26065.2  [L=111]
Description: hypothetical protein NDAI_0G02880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.17   10.7   0.0       0.21   10.4   0.0    1.0  1  RNA_pol_I_A49  A49-like RNA polymerase I associated factor


Domain annotation for each model (and alignments):
>> RNA_pol_I_A49  A49-like RNA polymerase I associated factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.2e-05      0.21     279     329 ..      45      95 ..      38      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 1.2e-05
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
  RNA_pol_I_A49 279 kllrkFteessnnkgkskrlskshkdkLlayilalaLhldnfs.vdltdLae 329
                    +++ +++ ++ ++ +++   +k++ d L  y+++l L+l+  + +d +d+++
     CCD26065.2  45 GIITQYSKSRDGKRRYTV-FDKMTSDYLFYYVVVLRLILRSQQsTDFDDMSR 95 
                    688999999998888775.*********************999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       301  (0.0167884); expected 358.6 (0.02)
Passed bias filter:                      185  (0.0103185); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.24s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 885.99
//
Query:       CCD26066.2  [L=536]
Description: hypothetical protein NDAI_0G02890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.8e-64  215.3   0.9    5.8e-64  215.3   0.9    2.7  3  DUF3449      Domain of unknown function (DUF3449)
      3e-50  170.2  15.6      3e-50  170.2  15.6    2.0  2  PRP9_N       Pre-mRNA-splicing factor PRP9 N-terminus
    1.9e-17   63.6   5.1    1.9e-17   63.6   5.1    2.8  3  SF3A3        Pre-mRNA-splicing factor SF3A3, of SF3a complex,
    2.3e-07   31.0   7.8    2.3e-05   24.6   4.3    2.9  2  zf-met       Zinc-finger of C2H2 type
    7.4e-06   26.1  11.4    3.1e-05   24.1   2.6    3.4  3  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
     0.0034   17.7   4.3       0.19   12.1   0.8    2.8  2  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
      0.006   16.3   1.3      0.018   14.8   1.3    1.9  1  zf-U1        U1 zinc finger
  ------ inclusion threshold ------
      0.066   14.1   7.8        5.1    8.2   0.2    3.0  2  zf-C2H2_4    C2H2-type zinc finger
          4    7.6   8.1          2    8.6   1.6    2.8  2  zf-DBF       DBF zinc finger


Domain annotation for each model (and alignments):
>> DUF3449  Domain of unknown function (DUF3449)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.6         2     4e+03      26      26 ..     104     104 ..      55     153 .. 0.50
   2 ?    1.1   1.0      0.15   3.1e+02      87     117 ..     288     317 ..     281     321 .. 0.84
   3 !  215.3   0.9   2.9e-67   5.8e-64       2     184 .]     329     535 ..     328     535 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2
                 H CS
     DUF3449  26 k 26 
                  
  CCD26066.2 104 E 104
                 1 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.15
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
     DUF3449  87 gkeykCeiCgnavYkGrkaFekHFseerHae 117
                 +k + C  C    +k   +Fe+H + ++H++
  CCD26066.2 288 KKGFFCKTCCK-WFKTLTVFESHLNGQKHIK 317
                 67799999986.69999************86 PP

  == domain 3  score: 215.3 bits;  conditional E-value: 2.9e-67
                 HHHHHHHHHHTHHHHHHHHHHHHHHHT--HHHHHHH..........................HH--SS--B-XXXXXX..........XXXXXXXXXXX CS
     DUF3449   2 elkikklaellskeieetkenverkqaltaeereee................eeeeeeek..keeeedeeeeeeeeki..........ynplnlplgwd 72 
                 e+k+++++ ll++e ++t e+verk+a+t+eer +e                e +e +e+  + + +d                    + ++n+plg+d
  CCD26066.2 329 EYKTHRYSMLLKEEHQSTCEFVERKMAFTVEERITEmkrlaeickapaydvnE-KEGDENntELNVKD---------NlkndgasamlSGSINMPLGPD 417
                 99*******************************99966665555555443321.11111111112222.........0223334444599********* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX......XXXXXX CS
     DUF3449  73 gkPipyWLykLhgLgkeykCeiCgnavYkGrkaFekHFseerHaeglkcLgientklfkeitkiedaleLweklkkekkkekakeee......eveveD 165
                 g P+p+WLykL+gL+++y+CeiC+n+++kGr++F+kHF+e++H+++l+cLgie t +fk++tkie+a++Lw+++k+++ + + k  e      ++eveD
  CCD26066.2 418 GLPMPFWLYKLQGLDVSYPCEICSNQIFKGRRTFDKHFTEATHIYHLRCLGIEPTPAFKGVTKIEEAQRLWNNMKNDTIMGDKKFIEtipdkmAIEVED 516
                 ***************************************************************************9976654443223445559***** PP

                 XXXXXXXXXXXXXXXXXXX CS
     DUF3449 166 eeGnvmskkvYedLkkqgl 184
                 +eGn+m++kvY++Lkkqgl
  CCD26066.2 517 KEGNIMTQKVYDELKKQGL 535
                 ******************8 PP

>> PRP9_N  Pre-mRNA-splicing factor PRP9 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.2  15.6   1.5e-53     3e-50       3     150 ..       6     161 ..       5     162 .. 0.96
   2 ?   -1.9   0.3       1.6   3.1e+03     139     144 ..     332     337 ..     270     399 .. 0.65

  Alignments for each domain:
  == domain 1  score: 170.2 bits;  conditional E-value: 1.5e-53
      PRP9_N   3 leerrslleeleviEdaIssRlqRnPelyykyleklskvekdke...ipkksdisknkiykskkskrsrkqillQqhEinlFledykkklksleklkee 98 
                 le+rrslle+le+iE+aIs+R+qRnPelyy++l+k+s+++++k+   +p++s +++nkiyk+kk kr+rkqi+lQqhEi+lF++d+++k+k+le+l++e
  CCD26066.2   6 LEKRRSLLEDLEIIENAISTRFQRNPELYYSNLKKVSELFPSKQveeLPTHSIMTNNKIYKTKKLKRNRKQIALQQHEISLFIKDFFSKQKELETLTRE 104
                 8***************************************98777799*************************************************** PP

      PRP9_N  99 adseelkdke...kslekfkelleeikekekd..seseeldinekkekYsmFssste 150
                 a+ +  k+ke     +e+fk+ l+ei+e + +  ++++el+in+k++kYsmFs+s +
  CCD26066.2 105 ANFKAKKNKEeilLPVEEFKDILSEINEADGNenGNRRELEINDKINKYSMFSNSLN 161
                 ********99888899************9988878999***************9975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.6
      PRP9_N 139 kekYsm 144
                  ++Ysm
  CCD26066.2 332 THRYSM 337
                 233333 PP

>> SF3A3  Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2       2.2   4.5e+03      59      76 ..      82      99 ..      27     102 .. 0.63
   2 !   63.6   5.1   9.4e-21   1.9e-17       2      77 ..     182     264 ..     181     266 .. 0.90
   3 ?   -0.5   0.1      0.94   1.9e+03      35      62 ..     300     327 ..     279     356 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.2
       SF3A3 59 keLleYLesfikrtqpLe 76
                +e+  ++++f+++++ Le
  CCD26066.2 82 HEISLFIKDFFSKQKELE 99
                456667788888877776 PP

  == domain 2  score: 63.6 bits;  conditional E-value: 9.4e-21
       SF3A3   2 FsgeEqyGkylDLnelyeeylnlkeik.ldYlqYLesfdkf....seip..kkqkkskeYkeYlkeLleYLesfikrtqpLed 77 
                 Fs eEqyG+yl Ln +y+e+ln+ + + l++lq+L++++ f    ++i    +++k++ Y +Yl++ ++YLesf++r++pL d
  CCD26066.2 182 FSLEEQYGEYLALNPYYTEWLNVVKKEdLTFLQFLNMLKIFqddkRYIVqpPMDRKNEPYMKYLQRYCSYLESFFERKYPLID 264
                 9**********************97536**********9998777444357999***************************88 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.94
       SF3A3  35 LesfdkfseipkkqkkskeYkeYlkeLl 62 
                 +++++ f++  + qk+ k+Y++ ++ L+
  CCD26066.2 300 FKTLTVFESHLNGQKHIKSYNKRVQGLY 327
                 5556666555566666666766666664 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   4.3   1.2e-08   2.3e-05       1      25 []     291     315 ..     291     315 .. 0.99
   2 !    6.8   0.1    0.0047       9.4       3      20 ..     437     455 ..     435     456 .. 0.92

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.2e-08
      zf-met   1 fyCelCnvtfnsesqlksHlqGKkH 25 
                 f+C+ C + f+  ++++sHl+G+kH
  CCD26066.2 291 FFCKTCCKWFKTLTVFESHLNGQKH 315
                 89*********************** PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0047
      zf-met   3 CelC.nvtfnsesqlksHl 20 
                 Ce+C n  f+++ +++ H+
  CCD26066.2 437 CEICsNQIFKGRRTFDKHF 455
                 *****************96 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       1.4   2.8e+03      14      23 ..      76      85 ..      74      85 .. 0.80
   2 !   24.1   2.6   1.5e-08   3.1e-05       2      26 ..     291     315 ..     290     316 .. 0.97
   3 !    6.2   0.3    0.0068        13       2      22 ..     435     456 ..     434     460 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.4
                 HHHHHCCTTS CS
  zf-C2H2_jaz 14 enaldnHlkS 23
                 + al++H+ S
   CCD26066.2 76 QIALQQHEIS 85
                 789****965 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 1.5e-08
                  CBBTTTTBBBSSHHHHHCCTTSHHH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSKkH 26 
                  f+C++C K+Fk+  +++ Hl++ kH
   CCD26066.2 291 FFCKTCCKWFKTLTVFESHLNGQKH 315
                  9************************ PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0068
                  CBBTTTT.BBBSSHHHHHCCTT CS
  zf-C2H2_jaz   2 fYCvlCd.KyFksenaldnHlk 22 
                  + C++C+   Fk  +++d+H++
   CCD26066.2 435 YPCEICSnQIFKGRRTFDKHFT 456
                  66*****9************86 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.8   9.7e-05      0.19      45      82 ..     286     321 ..     243     337 .. 0.76
   2 !    5.9   0.1    0.0079        16      49      76 ..     433     461 ..     425     466 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.7e-05
   zf-C2H2_2  45 ekieekleClyCekefkslealreHmkkkgHckineee 82 
                 ++ + ++ C +C k fk+l  +++H++ ++H k  +++
  CCD26066.2 286 NEKK-GFFCKTCCKWFKTLTVFESHLNGQKHIKS-YNK 321
                 3333.699****9******************996.432 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0079
   zf-C2H2_2  49 ekleClyCeke.fkslealreHmkkkgHc 76 
                  ++ C +C+++ fk ++++ +H +++ H 
  CCD26066.2 433 VSYPCEICSNQiFKGRRTFDKHFTEATHI 461
                 5678************************7 PP

>> zf-U1  U1 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.3     9e-06     0.018       4      34 ..     291     319 ..     288     323 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 9e-06
                 EEETTTTEEESS-SHHHHHHHHTSHHHHHHH CS
       zf-U1   4 YyCdYCdiyLthDspsvRksHngGrkHkenv 34 
                 ++C+ C+++    ++ v +sH +G+kH++  
  CCD26066.2 291 FFCKTCCKWF--KTLTVFESHLNGQKHIKSY 319
                 9*********..678899*********9865 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   2.5    0.0036       7.2       1      21 [.     291     311 ..     291     314 .. 0.91
   2 ?    8.2   0.2    0.0026       5.1       1      20 [.     435     455 ..     435     457 .. 0.94

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0036
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlk 21 
                 f C+ C+k+F++ + + +Hl+
  CCD26066.2 291 FFCKTCCKWFKTLTVFESHLN 311
                 78************9999986 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0026
   zf-C2H2_4   1 fkCpiC.gksFsskkaLlrHl 20 
                 ++C+iC ++ F+ ++++ +H+
  CCD26066.2 435 YPCEICsNQIFKGRRTFDKHF 455
                 89******************7 PP

>> zf-DBF  DBF zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.6     0.001         2       1      27 [.     288     317 ..     288     322 .. 0.83
   2 ?    1.4   0.6      0.17   3.4e+02       6      25 ..     437     460 ..     435     465 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.001
      zf-DBF   1 kksGYCEnCrvkfedle...eHlksekHrk 27 
                 kk  +C  C++ f+ l+   +Hl+ +kH k
  CCD26066.2 288 KKGFFCKTCCKWFKTLTvfeSHLNGQKHIK 317
                 57889********98654449*******76 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.17
      zf-DBF   6 CEnCrvk.fe...dleeHlksekH 25 
                 CE+C+++ f+    +++H ++ +H
  CCD26066.2 437 CEICSNQiFKgrrTFDKHFTEATH 460
                 999986535433357888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1475  (0.0822689); expected 358.6 (0.02)
Passed bias filter:                      505  (0.0281667); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 4207.36
//
Query:       CCD26067.2  [L=391]
Description: hypothetical protein NDAI_0G02900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.6e-111  370.4   0.0   2.8e-110  368.7   0.0    1.6  1  Actin     Actin
  ------ inclusion threshold ------
      0.014   14.2   0.0      0.074   11.9   0.0    2.1  1  MreB_Mbl  MreB/Mbl protein


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  368.7   0.0  3.1e-114  2.8e-110       2     402 ..       2     385 ..       1     388 [. 0.94

  Alignments for each domain:
  == domain 1  score: 368.7 bits;  conditional E-value: 3.1e-114
       Actin   2 devsavVlDnGssttraGyagedaPkavipslvgkprgrkvea........klyvgdealtkrpelevrspvedGvvedwdaveelwehvlkeelkvd. 91 
                 d+ s +VlD G++++++G age++P+ ++ps+vg+p  r +e         ++ +gdea + r+ l++++p+e+G++++w ++e lw++++++++k + 
  CCD26067.2   2 DPHSPIVLDQGTGFVKIGRAGENFPDYTFPSIVGRPILRAEERanittplrDIMIGDEASDVRSYLQISYPMENGIIKNWTDMELLWDYAFFNQMKLNn 100
                 77899******************************99998777899************************************************88872 PP

       Actin  92 peehpllltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssk 190
                 ++  ++lltepp+np k+rek++E++fEk+++ ++y+a +avl+++a+g+s+g+vvDsG++vt++vpV++ +vL++ +rr+d++G+++t++l  lls++
  CCD26067.2 101 TSGGKILLTEPPMNPLKNREKMCEVMFEKYDFGGVYVAIQAVLALYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLTRRLDVAGRDVTRHLIDLLSRR 199
                 56689*********************************************************************************************8 PP

       Actin 191 nvevtprylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpegdeekss..sspeksYeLPDgseiklgeeRfkvpEiLFdps 287
                                               +++++ +++ e++++iKe++c+vs+d   d++ ++  +   +sYeLPDg++ik+g+eRf++pE+LF+p 
  CCD26067.2 200 ------------------------------GYAFNRTADFETVRQIKEKLCYVSYDLDLDTKLARetTTLVESYELPDGRTIKVGQERFEAPECLFQPG 268
                 ..............................9*************************99966665544889999************************** PP

       Actin 288 ligsesaleeekskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaql...........askgvkvkiiapeeerkysaWiGG 375
                 l+  e+          g+ el++++i+ +dvd+r+ L++ iv++GG+s++pgl +Rlekel+ql             +++kv+i  p+ +rk++++iGG
  CCD26067.2 269 LVDVEQP---------GVGELLFNTIQSADVDVRSALYKAIVLSGGSSMYPGLPSRLEKELKQLwytrvlhndpsRLDKFKVRIEDPP-RRKHMVFIGG 357
                 ******9.........************************************************6666666555555555********.********** PP

       Actin 376 SiLAslgtfq.qlwvskqEYeEqGssvv 402
                 ++LAs++  + ++w+skqE+ E G+ ++
  CCD26067.2 358 AVLASIMADKdHMWLSKQEWYEGGAAAM 385
                 ******95554*************9876 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.3e-06     0.074      54     298 ..      64     321 ..      45     326 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.3e-06
                 GTTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH.HHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEE CS
    MreB_Mbl  54 pgnikavrPlkdGviadlevaeellkyfikkvkkkkslskprvvicvPsgiteverrAvkea.akkaGarevllieeplaAAiGaglpveepsgnmvvd 151
                 +  +++  P+++G+i++ +  e l  y + +  k +++s  +++++ P      +r+ + e+  +k     v++  ++++A    gl     s+ +vvd
  CCD26067.2  64 RSYLQISYPMENGIIKNWTDMELLWDYAFFNQMKLNNTSGGKILLTEPPMNPLKNREKMCEVmFEKYDFGGVYVAIQAVLALYAQGL-----SSGVVVD 157
                 456788899999999999999999999877777777888888888888766555555555541455555666666666666555555.....5779*** PP

                 E-SS-EEEEEEETTEEEE...EEEES-SHHHHHHHHHHHHHH.H..HSEE--HHHHHHHHHHH-BSS--HHHH.EEEEEEEETTTT..CE..EEEEEEH CS
    MreB_Mbl 152 iGggttevavislggivt...sksvrvaGdeldeaiikyirk.k..ynlliGertaekikieigsavkeeeee.kmeikGrdlvtg..lp..kevevss 239
                  G g t ++ + + ++v    ++++ vaG ++  ++i+++ +    +n +   +t+++ik ++ ++  + + + k+  + + lv+   lp  ++++v +
  CCD26067.2 158 SGDGVTHIVPV-YESVVLnhlTRRLDVAGRDVTRHLIDLLSRrGyaFNRTADFETVRQIKEKLCYVSYDLDLDtKLARETTTLVESyeLPdgRTIKVGQ 255
                 *******9766.44555412257899***********99855242367788899*********999877665545555555555431144335566655 PP

                 H..HHHHHHHHH.HHHHHHH.HHHHHHTS-HHHHHHH...HHH-EEEESGGGGSBTHHHHHHHHHS CS
    MreB_Mbl 240 e..evrealkep.vsaivea.vkevLektppeLaadi...vdrgivltGGgallkgldkllseetg 298
                 e  e  e+l +p +  + +  v e L +t      d+   + ++ivl+GG+++  gl + l++e++
  CCD26067.2 256 ErfEAPECLFQPgLVDVEQPgVGELLFNTIQSADVDVrsaLYKAIVLSGGSSMYPGLPSRLEKELK 321
                 511455677554244443323666666665555555422245899999***999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       422  (0.0235373); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3083.65
//
Query:       CCD26068.2  [L=967]
Description: hypothetical protein NDAI_0G02910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   5.2e-155  517.5  12.1   6.3e-155  517.2  12.1    1.1  1  CRT10     CRT10


Domain annotation for each model (and alignments):
>> CRT10  CRT10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  517.2  12.1  3.5e-159  6.3e-155       2     716 ..     124     961 ..     123     962 .. 0.84

  Alignments for each domain:
  == domain 1  score: 517.2 bits;  conditional E-value: 3.5e-159
       CRT10   2 dPaelllpqdeklkvkeiaitfpvekfrdrlrveglg...FkNNlaviiersvlfiaagseieifdldklsalsktkvv.lreytkpsqvkledrlist 96 
                 +Paelll++  +l ++ei+ t ++++  +r++ +  +   FkNNl v++ ++++fia   ++ i+ + +++   ++k + +  +   +  +++d+  ++
  CCD26068.2 124 NPAELLLSNEHRLIIEEILPTIDSFNASNRINSN--NeatFKNNLTVTY-KEYIFIAKDDDVYIHKIVDIEG--DEKWQgITIIFSCTDSTTPDDTPAS 217
                 8*****************9776666666666554..3447*********.********************99..4445556777777778889998888 PP

       CRT10  97 sp...nphtinflkivnflGqevLvaciddGivllwevstiikefkkf.......ssdideg.tsrikikPdlklrleasvWslDvidydsislialsd 184
                 +p      tinf+kiv+f   ++L++ci++   l++ ++ + ++ +          + +d   + r+ki P  +l ++as+Ws+D ++ ++  ++a+++
  CCD26068.2 218 VPelnRMPTINFMKIVKFGDVDMLCLCIEESKALFYPIEDLLEKSRTDicriqhdDEGNDLNeEFRMKILPLTVLVVPASCWSVDTYSTEECVYVAIGH 316
                 884422359********************************9876665788875522233223778********************************* PP

       CRT10 185 nsqgitllaydkd..kerfyiek......eiqtshnvPcvsfvknednseghitvayasisgevvtlkfkfkeedgplerlkiessildtrfllgedcW 275
                 n++gi+l+++  d   ++ y ++      ei + hnvPc+sfv+n+ +++g++t+  +si+g+++t+k+kf++  g     k+e+++ldt+f+ g++cW
  CCD26068.2 317 NGPGISLFVFPMDelPNKWYLDPskiittEIISKHNVPCISFVPNSLDEKGYVTLGFCSIYGNITTIKVKFNKITG-----KLETNFLDTQFF-GTFCW 409
                 *************88899**999777777888********************************************.....9***********.***** PP

       CRT10 276 TvtpiskkdFkevdslealtlnYqkireektlesimqdssiLdnlpdnplkskslGigarlaqfevPvvdlellnsegvvdlvielr............ 362
                 T+t++skkdF+  +++e+l+ln+q+++++++l+si+ d+  L++ p   + s++lGig++++q+ vPv++ +l++++g     ++lr            
  CCD26068.2 410 TITSLSKKDFLTIPEFEYLNLNFQTSFKKSILTSICDDDTTLGFHPPSIYYSNNLGIGTLTTQIPVPVSEVSLGCQKGHLKDFVQLRftsfeenissgk 508
                 ******************************************************************************99999**************** PP

       CRT10 363 ........qsaytkggkikyevvrekkvlvkykvdlddckkekrknt.yadeklgkekleedkk..............kvkekesswqeesglklqeek 438
                         +   ++ g + + v +  + + ++++  d +++  r++   +++   +e+l ++++              + ++++ s +  +      ++
  CCD26068.2 509 lknvreeeEEEEEEEGEVVHTVQPLSQRQDTEHTTIDYIEDDIRRYYvFWEKYWEQENLNDEEIkryskwwntkfdlaNNRNTTVSRNSSG---NILKN 604
                 ***9999888888899999999999999999999999999999986515777778889977755666666666666653333332222111...22223 PP

       CRT10 439 dykekklnsqdleesleierkv................................................................sdnievladlsvl 473
                  yk + l                                                                               ++++ + +d+++ 
  CCD26068.2 605 SYKFTAL--------------NerrdfylqniplrnrhliepnklnhfsrhflrlptspfygisisydknsyqsitaswnqqcgisTEDTGTHTDDRTS 689
                 3333333..............233333444444444777788888888899999999999999999999999999988877777776666677777777 PP

       CRT10 474 iskdkteklkqieilelel.estklsdidedyeeeesdlplas...........................sikkrsihnhvkkvkrlleevekesresp 544
                 ++  + +  ++i+  + el    +++di+++        ++ s                           s++k+sihnh  kv++ll+++e++s+ s 
  CCD26068.2 690 TESLNEQLNERIDRGSIELlGVESEEDIEDGN-------SISSeirntlgsahennwakrlgypetvspsSQRKWSIHNHATKVHELLANIEDGSERSL 781
                 66666666666665555441334444555544.......2222333366679999999999999999999***************************** PP

       CRT10 545 lGkkfkevsesdeflvvtTakklyLvradpLivnsaTk.eiFpledvftceskss....nRisivchIkeLsciivasqlGLisllRLteyrGiysfRq 638
                  G k+k+   +d f++vtTa  +yL++a+pL+++s+T+ ++Fple+   c+ + +    nRi+ vchIkeL+ci+vasq+GLisllRLtey+GiysfRq
  CCD26068.2 782 TGFKLKDL--NDDFFLVTTADCIYLLKAHPLLITSFTAeKVFPLEEANFCSCHDFifalNRINTVCHIKELNCIVVASQVGLISLLRLTEYKGIYSFRQ 878
                 ********..9**********************************9554444444459***************************************** PP

       CRT10 639 Eyilpweridpvnddeec.....riytkdqedsdvyCgacdlvfpyaeirgldyvavredsanerlerallyvaytdglvaYe 716
                 Eyil+w+ +dp n++ee+      i +   +    yCg++d+++py +i g+dyv+++ d++n+ + +++lyv+++++++++ 
  CCD26068.2 879 EYILGWKSQDPQNPNEENrciltSISSIRFGTERWYCGIDDVYLPYYNITGMDYVYIPADEVNGLAAYVILYVISGNCIRRFR 961
                 ***************99986666555666678899*********************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (967 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       731  (0.0407719); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.26s 00:00:01.00 Elapsed: 00:00:00.42
# Mc/sec: 6907.22
//
Query:       CCD26069.2  [L=486]
Description: hypothetical protein NDAI_0G02920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-75  253.9   0.4    2.2e-75  253.4   0.4    1.2  1  Adap_comp_sub  Adaptor complexes medium subunit family


Domain annotation for each model (and alignments):
>> Adap_comp_sub  Adaptor complexes medium subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.4   0.4   1.2e-79   2.2e-75       2     263 ..     189     485 ..     188     486 .] 0.98

  Alignments for each domain:
  == domain 1  score: 253.4 bits;  conditional E-value: 1.2e-79
                    XXXXXXXXXXX-EEEEEEEEEEEEEE-TTS-EEEEEEEEEEEEEE---TT-EEEEEE-SS-EE................................. CS
  Adap_comp_sub   2 swrrkgikykkneiyldviErvsvlvdkkGkilksevqGtiacksklsgmpelklgLndklnk................................. 64 
                    swr+k ik+kkne+ l+v E++++lv+k+G+ilk+ v+G i+++ +lsg+p +++gLnd l++                                 
     CCD26069.2 189 SWRPKDIKHKKNEVILHVNEKINILVAKDGSILKAYVDGSIDLQTRLSGTPVCQFGLNDSLTLgsndseyssrngrtgnnkssmldsnlsnkvlsk 284
                    8*********************************************************************************************97 PP

                    ..--S.SEESEEEEETT-B-TTHHHH-EEEE---SEEEEEEEEEES--SS--SEEEEEEEEE-TTTSEEEEEEEEEE-S-TT-EEEEEEEEEE--T CS
  Adap_comp_sub  65 ..ekk.ielddvsfHqcVnldkfeservisFiPpdgeftLmrYrlsannvklPfsvkpkvklsgdevrveielklkenfkkkltlenvkisiplpk 157
                          ++l+d++fHqcV+ldkf++er+i+F+Ppdg+++Lm+Y++ +nn++lPf+++p+v+ s ++  +++++ lk+ f+ +l+++ v+++ip+p 
     CCD26069.2 285 asV-GnVILEDCKFHQCVSLDKFDRERIIKFVPPDGSVELMKYHI-RNNLNLPFKITPIVTNSVTGDALDYRIALKSLFPGRLSAKGVVLHIPVPP 378
                    633.37***************************************.*********************************99*************** PP

                    T-EEEEEEESSTT-EEEEETTEEEEEE--EETT-EE..EE.EEEEE--------------.EEEEEEEET--SS---EEEEEEE--.-----EEEE CS
  Adap_comp_sub 158 evsnlaiktskGkakynpeenaleWtikklpggnesslsg.eleleaesekkeenprdgklvsveFkipgftaSgikVeslkveer.esykpfkwv 251
                     v  ++i++s+G++k+ p+ena++W+++k +g +e +ls+ ++  +  ++   +++ +++ +s++F+i +f+ Sg+ V++  ++e  ++yk +kw+
     CCD26069.2 379 GVMDCNISVSNGTCKFVPAENAMVWKFNKYNGLTENTLSAvTVPSKEVNQTTLQQWARPP-MSLDFEILMFSNSGLVVRYFTISEGhQNYKAVKWI 473
                    ********************************************************9999.***********************999********* PP

                    EEEEEEEEEEE- CS
  Adap_comp_sub 252 ryvtvsgeyeir 263
                    +yv +sg+ye+r
     CCD26069.2 474 KYVSKSGSYEVR 485
                    **********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 3637.09
//
Query:       CCD26070.2  [L=520]
Description: hypothetical protein NDAI_0G02930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.9e-41  141.5   3.0      1e-39  136.5   3.0    2.3  1  Pribosyl_synth  Phosphoribosyl synthetase-associated domain
    2.9e-35  120.7   0.0    9.3e-35  119.1   0.0    1.8  1  Pribosyltran_N  N-terminal domain of ribose phosphate pyropho
    5.2e-11   42.3   1.1    6.7e-10   38.7   1.1    2.1  1  Pribosyltran    Phosphoribosyl transferase domain
  ------ inclusion threshold ------
      0.082   12.3   0.0       0.34   10.3   0.0    1.9  2  UPRTase         Uracil phosphoribosyltransferase
      0.099   12.8   2.7      0.085   13.0   0.8    1.8  2  Adeno_PIX       Adenovirus hexon-associated protein (IX)


Domain annotation for each model (and alignments):
>> Pribosyl_synth  Phosphoribosyl synthetase-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.5   3.0   2.9e-43     1e-39       1     183 [.     307     516 ..     307     517 .. 0.85

  Alignments for each domain:
  == domain 1  score: 136.5 bits;  conditional E-value: 2.9e-43
                     TGGGEEEEESSGGGHHHHHHHHHHTT-EEEEE-----------......------------....................-------------- CS
  Pribosyl_synth   1 dyrnavivakspgsakkatsyaerlrlglavihGeqkeaeade......vdgrqsppekke....................savekslelpella 69 
                     dy++avi++ + g ak+at+ a+ l l+ a+ih e++++  +       + g+   p + +                    +  +++      ++
      CCD26070.2 307 DYQDAVIISPDAGGAKRATAIADALELSFALIHKERRSQLLKGppdatlTSGGA-LPVSPKplvatlnfprninassppkpQISHRHGGDDVNQS 400
                     8***********************************998654431112133333.3333335788999**9999998887433333444556677 PP

                     -------EES--TTSEEEEEEEEE-S-HHHHHHHHHHHHTT--EEEEEEEEE---TTHHHHHHHSS--EEEEESSS--H..HHHHT-TTEEEE-- CS
  Pribosyl_synth  70 kekppltvvGdvgGriaiivddliddvesfvaaaevlkerGaykiyvlathGllssdaprlleesaidevvvtntiphe..iqklrcskiktvdi 162
                     k      vvGdv  ++ iivddl+d   ++  aa++lk++Ga k+y+l+thG++s da +++++s+id+++++ntip++  +q l  +++  +d+
      CCD26070.2 401 KYIQTTMVVGDVRNKVCIIVDDLVDTSYTITRAAKLLKDQGATKVYALITHGIFSGDALNRINQSSIDKLIISNTIPQDktVQFLGKDRVDVIDV 495
                     8888889**********************************************************************984467788899****** PP

                     HHHHHHHHHHHHHT---TT-S CS
  Pribosyl_synth 163 slllaeairrihngesmsylf 183
                     s ++ eairrihnges+s lf
      CCD26070.2 496 SRVFGEAIRRIHNGESISMLF 516
                     ********************9 PP

>> Pribosyltran_N  N-terminal domain of ribose phosphate pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0   2.6e-38   9.3e-35       1      95 [.      29     123 ..      29     137 .. 0.96

  Alignments for each domain:
  == domain 1  score: 119.1 bits;  conditional E-value: 2.6e-38
  Pribosyltran_N   1 lkifagssskeLaekiakrlgvelgkakvsrfadgEikveieesvrgkdvfiiqslskpvndnlmelllmidalrrasakritaViPylgysrqd 95 
                     ++if g+s++eL +ki+++++++  ++++++f++gE+++++ +svr+kdv++iqs + +vnd++m+ll++i+a++ asa+r+taV+Py++ysrq 
      CCD26070.2  29 IVIFGGESHPELVKKICENVNIHPSQVTLGKFSNGETSISVGDSVREKDVYVIQSGCGQVNDTFMQLLILISACKSASASRVTAVMPYFCYSRQP 123
                     58*******************************************************************************************96 PP

>> Pribosyltran  Phosphoribosyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   1.1   1.9e-13   6.7e-10      28     118 ..     308     445 ..     298     458 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.9e-13
                   GGGEEEEEEETTTHHHHHHHHHHSTT-EE-EEEEEE-T..TT--EE................................................... CS
  Pribosyltran  28 gkpdvvvgiargGvpfakiladeLevplayvrkvkyrp..dgseeaargssdes........................................... 79 
                   ++  v++ ++ gG  +a+++ad+Le+ +a + k+++++  +g ++a+ +    s                                           
    CCD26070.2 308 YQDAVIISPDAGGAKRATAIADALELSFALIHKERRSQllKGPPDATLT----Sggalpvspkplvatlnfprninassppkpqishrhggddvnqs 400
                   5667*********************999999999887632444444443....23445899************************************ PP

                   ......EE----TTSEEEEE-SEESSSHHHHHHHHHHHCC-BSEE CS
  Pribosyltran  80 ......rlledpagkkVliVDDildtGgTllaalelLkekgpeev 118
                            +d+++k ++iVDD++dt  T+++a++lLk++g+++v
    CCD26070.2 401 kyiqttMVVGDVRNKVCIIVDDLVDTSYTITRAAKLLKDQGATKV 445
                   ******************************************988 PP

>> UPRTase  Uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.32   1.1e+03      59      95 ..      14      51 ..       9      65 .. 0.82
   2 ?   10.3   0.0   9.6e-05      0.34     118     171 ..     411     464 ..     383     479 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.32
     UPRTase 59 ysgelldeekialVpil.RaGegmeealrellpearvg 95
                y+ +++++++i++ +i+  +Ge++ e +++++ +++++
  CCD26070.2 14 YHCKTQPTKSIVMSSIViFGGESHPELVKKICENVNIH 51
                66778888888888875269999999999999999987 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 9.6e-05
     UPRTase 118 kiaertvlllDpviaTGgsaaaaiqlLkergvgeekIlvlsvlaseegvkrlae 171
                 +++++  +++D ++ T+ ++  a +lLk++g+++   l+   + s  +++r+ +
  CCD26070.2 411 DVRNKVCIIVDDLVDTSYTITRAAKLLKDQGATKVYALITHGIFSGDALNRINQ 464
                 5678899***********************998877777778888777777765 PP

>> Adeno_PIX  Adenovirus hexon-associated protein (IX)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.8   2.4e-05     0.085       5      67 ..     106     169 ..     103     184 .. 0.81
   2 ?   -3.0   0.0       2.2   8.1e+03      31      44 ..     203     216 ..     201     236 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.4e-05
   Adeno_PIX   5 vssylttrmppwagvrqnvmgssidgrpvlpansttltyetvsgtpletaasaaa.saaaatar 67 
                  +s +t+ mp ++  rq     ++ g p++     t t+e+  gtp++  +s+ + s+++ t++
  CCD26070.2 106 SASRVTAVMPYFCYSRQPDTPYTVKGAPLISKPRETYTFESNPGTPINGGSSTKSnSSSSMTTQ 169
                 57889*******************************************9888654144444443 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.2
   Adeno_PIX  31 rpvlpansttltye 44 
                 rpvlp+   t++  
  CCD26070.2 203 RPVLPTLNNTMSLS 216
                 89999977777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 3580.72
//
Query:       CCD26071.2  [L=705]
Description: hypothetical protein NDAI_0G02940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-33  113.5   0.8    1.7e-32  112.5   0.8    1.4  1  DUF21     Cyclin M transmembrane N-terminal domain
    0.00012   22.4   0.1       0.38   11.2   0.0    3.2  3  CBS       CBS domain


Domain annotation for each model (and alignments):
>> DUF21  Cyclin M transmembrane N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.5   0.8   1.9e-36   1.7e-32       1     171 [.      65     232 ..      65     236 .. 0.93

  Alignments for each domain:
  == domain 1  score: 112.5 bits;  conditional E-value: 1.9e-36
       DUF21   1 liivlllllsaffsgaEtAlvslsrlrleelaekgk....kkakrllkllknp.erlLstlligntlvnillsalatalfvellaegalavviatviv. 93 
                 +i  +l++l ++f+g++++l+  +++ l+  + +g+    k a+r+l+l+++  +++L+tll+ n ++n  l+++++ +++  +++         v+  
  CCD26071.2  65 IISAILVVLGGVFAGLTLGLMGQDEVYLKVISTSGTptekKLAARVLSLISRGkHWVLVTLLLSNVITNETLPIVLDRCLGGGWQA---------VLSs 154
                 6788999*********************88888777666577888999999998*************************9999973.........6666 PP

       DUF21  94 tllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlilesesepavseeelkklveeseeegv 171
                 t+li++fgEi+P+s+++ky +++ ++++p++ +lm+++yP+++++  ll+++l++++++ +++  lk+lv++++  gv
  CCD26071.2 155 TVLIVIFGEIIPQSICVKYGLQVGAFFSPFVLLLMYVMYPVAYPIATLLDYLLGEDHGTIYKKSGLKTLVTLHRTMGV 232
                 *************************************************************************98875 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00057       5.1      23      55 ..     279     313 ..     254     315 .. 0.77
   2 !   11.2   0.0   4.3e-05      0.38       9      55 ..     325     377 ..     320     379 .. 0.66
   3 ?   -2.9   0.0       1.1   9.8e+03       4      18 ..     689     700 ..     687     701 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00057
                 HH.HHHHTSSEEEEE..ETTTBEEEEEEHHHHHHHH CS
         CBS  23 el.mrekgvsrlPVV..dedgklvGivtlrDllral 55 
                 el + ++g+sr+P+   +e ++++G++  r l+++ 
  CCD26071.2 279 ELiF-NSGFSRIPIYlpNEPNNFIGMLLVRVLISYD 313
                 4437.889******77*99999*****999888775 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.3e-05
                 CEEEETT...SBHHHHHHHHHHHTSSEEEEE.....ETTTBEEEEEEHHHHHHHH CS
         CBS   9 vvtvppd...ttleealelmrekgvsrlPVV.....dedgklvGivtlrDllral 55 
                 + t+p++   t+   +l+ + ++g s++++V      ++g  +G++tl+D+++ l
  CCD26071.2 325 LATLPETspnTSCLNILNYF-QEGKSHMCIVskdpgSSQG-AIGVLTLEDVIEEL 377
                 55566661116666666666.56668****9976544344.***********987 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.1
                 HSBSSCEEEETTSBH CS
         CBS   4 imtrdvvtvppdttl 18 
                 i   d ++v+p+t++
  CCD26071.2 689 I---DEISVSPNTSI 700
                 4...7789*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5081.20
//
Query:       CCD26072.2  [L=141]
Description: hypothetical protein NDAI_0G02950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-08   31.8   8.5    8.1e-08   31.6   8.5    1.1  1  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin
  ------ inclusion threshold ------
      0.043   13.5   0.1      0.059   13.1   0.1    1.3  1  ATG2_CAD        Autophagy-related protein 2 CAD motif


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   8.5   9.1e-12   8.1e-08      76     220 ..       4     138 ..       1     141 [] 0.84

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 9.1e-12
  Hyphal_reg_CWP  76 asatgsieNnGiivfnseesltassyklvgasFeNnGelylagsgsvvastmeitsnsweNnGlivfyqsqrssgtvklgaalgsitNdGqIclk 170
                     +++ ++i+N+G +++++ +s    s k++  s+ N G +  ++sg     +++++ +++ N+G+i++   +r ++ ++++a+ + i+N+ +I ++
      CCD26072.2   4 NTVPKNINNKGNLIIDNGDSGD-KSTKVTTCSLINGG-ILKDTSG-----SLSVN-KTFINSGYIWLGYVSRFDSLLTFEASKTGIQNSDTIDVS 90 
                     467799*********9998877.56788999****99.5555555.....46776.99************************************* PP

  Hyphal_reg_CWP 171 nqayqqttsiqGsGCitvgedssiyisnsllsissdqtiYLadsssslvv 220
                      ++++ +   +G GCi  +  s+  +s    ++s  qt+++++s s l+ 
      CCD26072.2  91 GTNVTVNVPNTGGGCICGDSISTD-LSI-DTDYSLYQTFWMESSGSCLIY 138
                     ****************87766554.433.348999********9998875 PP

>> ATG2_CAD  Autophagy-related protein 2 CAD motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   6.6e-06     0.059      47     119 ..      12      93 ..       3     122 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 6.6e-06
    ATG2_CAD  47 kaslllIDdvknlkeksskkskke.........rsssssssqvsylskrGyvsigsissakvgvtvned...kdgeksvdvevnd 119
                 +   l+ID+ ++ + ks+k +  +         + +s s s  ++++++Gy+ +g++s     +t++++    +++ ++dv+ ++
  CCD26072.2  12 NKGNLIIDNGDSGD-KSTKVT--TcslinggilKDTSGSLSVNKTFINSGYIWLGYVSRFDSLLTFEASktgIQNSDTIDVSGTN 93 
                 55568899988433.333333..134799999999999*****************************995553344444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       376  (0.0209716); expected 358.6 (0.02)
Passed bias filter:                      261  (0.0145574); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 1064.35
//
Query:       CCD26073.2  [L=443]
Description: hypothetical protein NDAI_0G02960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-49  167.5  21.0    3.5e-49  167.5  21.0    1.5  2  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.5  21.0     2e-53   3.5e-49       2     319 ..      16     327 ..      15     335 .. 0.91
   2 ?   -3.5   0.7      0.21   3.8e+03     202     219 ..     387     404 ..     368     432 .. 0.53

  Alignments for each domain:
  == domain 1  score: 167.5 bits;  conditional E-value: 2e-53
  Hyphal_reg_CWP   2 lllialalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitstssllalsvtlasatgsieNnGiivf.nsees 95 
                     +++i++++aleisentv ++ ++++ +dltI++g+yl ++++ +++++++ ++ nng+l+i + s++ ++s++   a +s++N+G++++ n+   
      CCD26073.2  16 FQIITSIAALEISENTVIDNLATVT-DDLTIDRGSYLLVTYDPSVSINSN-NIVNNGNLCIGTASTTDSISIN--IAGSSLNNKGKLIIdNGPIG 106
                     6799********************9.***********************9.899*******************..788***********556677 PP

  Hyphal_reg_CWP  96 ltassyklvgasFeNnGelylagsgsvvastmeitsnsweNnGlivfyqsqrssgtvklgaalgsitNdGqIclknqayqqttsiqGsGCitvge 190
                     ++++ +kl  a+++N+G  yl+g+ + +++ +++t +s+ N+G+i++  s +  g+++++ +++ i+N+G+I +++++++++  ++G GC++ ++
      CCD26073.2 107 TASTLIKL--ATLTNSG--YLRGRLNDGSDGLTVT-DSFINTGYIWLGYSGNVFGSFTINPPNTGIQNSGTISFTDSNVTINFPVTGGGCMVGST 196
                     77888888..9******..**************99.9********************************************************** PP

  Hyphal_reg_CWP 191 dssiyisnsllsissdqtiYLadsssslvvesvskpqtfkvagFGngnkigltlpllgl..vlssisYdsdtgiLtlralllsqkFnIGtGYdss 283
                     +  ++  n+   +s dqtiYL++++++ ++   s +    ++g   + + ++  ++ ++  ++s isY++++giLt  + + ++k++IGtGYd++
      CCD26073.2 197 SRDTFAVNTD--YSIDQTIYLTSTTTKSITILGSGKYIPVIRGVDAKTTFQFGRQVRKSnnTKSVISYNTTSGILTTWNVYGIMKLDIGTGYDAT 289
                     ****997766..999********999988877774555778888888888888777766677799************977668************ PP

  Hyphal_reg_CWP 284 kFeivtdagagllsvqngavtYngpvPs..rslPsaCq 319
                      F   + ++ ++++++   ++Y+g vP+  +s+Ps C+
      CCD26073.2 290 GFISGQVISGSCSTCYAPIISYSGIVPTagTSRPSICD 327
                     **75666666777999************9999*****8 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.21
  Hyphal_reg_CWP 202 sissdqtiYLadsssslv 219
                     +   ++ti++++s+  + 
      CCD26073.2 387 QHTASKTIVMSSSQCVIT 404
                     444555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       635  (0.0354175); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 3146.00
//
Query:       CCD26074.2  [L=494]
Description: hypothetical protein NDAI_0G02970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-52  177.4   0.2    1.8e-52  177.4   0.2    1.6  2  NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogen
    1.7e-40  138.6   0.1    3.9e-40  137.4   0.1    1.6  1  NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogen
     0.0017   18.9   0.1      0.054   14.1   0.1    2.6  1  F420_oxidored   NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.024   15.1   0.1      0.063   13.7   0.1    1.7  1  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai
      0.035   13.1   0.0      0.063   12.3   0.0    1.3  1  PDH             Prephenate dehydrogenase
      0.036   13.6   0.1       0.25   10.9   0.0    2.3  3  IlvN            Acetohydroxy acid isomeroreductase, NADPH-bin
       0.35   11.0   2.1       0.69   10.1   2.1    1.4  1  DUF3894         Protein of unknown function (DUF3894)


Domain annotation for each model (and alignments):
>> NAD_Gly3P_dh_N  NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       3.9     1e+04      33      57 ..      91     114 ..      86     124 .. 0.62
   2 !  177.4   0.2   7.2e-56   1.8e-52       2     152 ..     140     304 ..     139     308 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.9
                     HHHHHHHHHSSBTTTBTT----TTE CS
  NAD_Gly3P_dh_N  33 elieeineehenvkyLpgiklpenl 57 
                     ++i +in++++n+   ++++ p+ l
      CCD26074.2  91 QTISNINKNNNNN-ITRKMTSPTRL 114
                     5566777666554.34445555555 PP

  == domain 2  score: 177.4 bits;  conditional E-value: 7.2e-56
                     EEEE--SHHHHHHHHHHHTTT........--EEEE-S-H.....HHHHHHHHHSSBTTTBTT----TTEEEES-HHHHHTT--EEEE---HHHHH CS
  NAD_Gly3P_dh_N   2 iavlGaGswGtalAkvlaeng........hevrlwvree.....elieeineehenvkyLpgiklpenlvattdlaealkgadiivlvvPsqalr 83 
                     ++v+G+G+wGt++Akv++en+        +ev +wv+ee     +l+e in++henvkyLpgi+lpenl+a++dl +a+k+adi+v+++P+q+l 
      CCD26074.2 140 VTVIGSGNWGTTIAKVVSENTaihshvfeKEVQMWVFEEkidgqNLTEIINTKHENVKYLPGIELPENLRANPDLLDAVKEADILVFNIPHQFLS 234
                     9********************************************************************************************** PP

                     HHHHHHCCC--TT-EEEE---SEET...TTEEHHHHHHHHH-S--EEEEESS--HHHHHTT--EEEEEEES CS
  NAD_Gly3P_dh_N  84 evlkklkgllkkkailvsliKGiee..gtlkllsevieeelkeekvavlsGpslAeEvakgkptavviask 152
                     +++k+l+g++kk a+++s++KG+e   ++++lls++i++el+++ ++ lsG++lA Evak++++++++a++
      CCD26074.2 235 RIVKQLEGHVKKGARAISCLKGFEVgvKGVQLLSSYITDELGIA-CGALSGANLAPEVAKEHWSETTVAYQ 304
                     ***********************6633799**************.************************97 PP

>> NAD_Gly3P_dh_C  NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   0.1   1.5e-43   3.9e-40       1     140 [.     337     482 ..     337     484 .. 0.91

  Alignments for each domain:
  == domain 1  score: 137.4 bits;  conditional E-value: 1.5e-43
                     -HHHHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHTSS..GGGGG.STTTHHHHHHHHHSCT.HHHHHHHHHHC..T--H CS
  NAD_Gly3P_dh_C   1 DviGvelagalKNviAiaaGivdglglgdntkaalitrglaEmarlakalgak..petfl.glaglgDlivtctsgksRNrrfGeelgk..gesl 90 
                     Dv+G+++agalKNv+A+++G+v+glg+g+n+ aa+ + gl E++++++++  +   et++ ++ag++Dli+tc++g  RN+r+++ +++  +  +
      CCD26074.2 337 DVAGISIAGALKNVVALGCGFVEGLGWGNNAGAAIQRVGLGEIIKFGQMFFPEsrVETYYqESAGVADLITTCSGG--RNVRVAKYMAEtgKGAI 429
                     9************************************************944455779999***************..***********954455 PP

                     HHHHHHHC.C--HHHHHHHHHHHHHHHTT...G.HHHHHHHHHHHS---HHHH CS
  NAD_Gly3P_dh_C  91 eeiekeln.qvleGvetakevyellkkkgv..emplleavykilyegkspeel 140
                     e+ ++ ln q ++Gv t+kev+e+l+k ++  e+pl+eavy+i+y+++++e+l
      CCD26074.2 430 ESEKDLLNgQSAQGVITCKEVHEWLDKCELtqEFPLFEAVYQIVYNNVPMENL 482
                     555558899******************99889****************99875 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   2.1e-05     0.054       1      96 [.     139     255 ..     139     256 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
                    EEEEETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC..........................-EEECECHHHHHHH-SEEEE-S- CS
  F420_oxidored   1 kigiiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelg..........................vkvtavdneeaaeeadvvvlavk 70 
                    ++ +iG+Gn g ++a+ ++++ a  +++      ++ ++  ++e++                            ++ + d  +a++ead++v+ ++
     CCD26074.2 139 RVTVIGSGNWGTTIAKVVSENTAIHSHVF----EKEVQMWVFEEKIDgqnlteiintkhenvkylpgielpenLRANP-DLLDAVKEADILVFNIP 229
                    57899999999999997777765333333....223333333333334445555568889999999999999888999.99*************** PP

                    HHHHHHHHHHCGHHHHTTSEEEEESS CS
  F420_oxidored  71 pedveevlselakdalkgklvisvla 96 
                     + ++ ++++l  + +kg   is+l 
     CCD26074.2 230 HQFLSRIVKQLEGHVKKGARAISCLK 255
                    ***********999999999999875 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.1   2.5e-05     0.063       1      95 [.     139     252 ..     139     264 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.5e-05
                     EEEEETTTSHHHHHHHHHHHC....TSSE...EEEEEEESTTTTTSBHHHHSG..........GGTTTECEBEEEGGGGGCTT-SEEEE-SCHHH CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLee....hpev...elvvllsssrsaGkklaeavk..........aleegkdlkvedvdeeelkevdivflalpagv 78 
                     +v ++G +G+ G+ ++++++e    h +v   e+   + +++ +G++l+e  +           +e  ++l+ ++   +++ke+di+++  p++ 
      CCD26074.2 139 RVTVIG-SGNWGTTIAKVVSEntaiHSHVfekEVQMWVFEEKIDGQNLTEIINtkhenvkylpGIELPENLRANPDLLDAVKEADILVFNIPHQF 232
                     699***.***********9996655544333255556667778*******9999999999999999999999999999999************** PP

                     HHHHHHHH...HHTTSEEEE CS
  Semialdhyde_dh  79 skelapkl...aeagvkviD 95 
                      + ++++l   +++g++ i+
      CCD26074.2 233 LSRIVKQLeghVKKGARAIS 252
                     *******9777888887776 PP

>> PDH  Prephenate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.5e-05     0.063      27      73 ..     201     248 ..     182     253 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.5e-05
                 HHHTTSSSEEES-.GGGGCCGSEEEE-S-GGGHHHHHHHHHHHS-TT- CS
         PDH  27 alelglvdeatdd.ieavkeadivvlavPvevilevlkelaphlkeda 73 
                 + el     a++d ++avkeadi v  +P + +++++k+l  h+k++a
  CCD26074.2 201 GIELPENLRANPDlLDAVKEADILVFNIPHQFLSRIVKQLEGHVKKGA 248
                 555555566777889******************************986 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.8     2e+03       6      25 ..     139     158 ..     138     179 .. 0.81
   2 ?   10.9   0.0   9.7e-05      0.25      56     105 ..     216     265 ..     210     272 .. 0.90
   3 ?   -2.3   0.0       1.1   2.9e+03     123     140 ..     391     408 ..     388     427 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.8
                 -EEEES-SHHHHHHHHHHHH CS
        IlvN   6 kiaviGyGsqGhaqalnlrd 25 
                 +++viG G+ G + a+ + +
  CCD26074.2 139 RVTVIGSGNWGTTIAKVVSE 158
                 58899999999988887665 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 9.7e-05
                 HHHHT-SEEEE-S-HHHHHHHHHHHTGGG--TT-.EEEESSSHHHHTTSS- CS
        IlvN  56 eavkkadvvmiliPDelqkevyeeeiepnlkegk.alafahGfnihfglik 105
                 +avk+ad++++ iP ++ ++++ +++e ++k+g+ a+++ +Gf++  + ++
  CCD26074.2 216 DAVKEADILVFNIPHQFLSRIV-KQLEGHVKKGArAISCLKGFEVGVKGVQ 265
                 89********************.899*****998799*******9888776 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.1
                 HHHHHHHTT----EEEEE CS
        IlvN 123 lvreeyeegkGvpaliav 140
                  v + y+e  Gv  li+ 
  CCD26074.2 391 RVETYYQESAGVADLITT 408
                 688899999999999864 PP

>> DUF3894  Protein of unknown function (DUF3894)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.1   0.00027      0.69       7      47 ..      18      58 ..      12      62 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00027
     DUF3894  7 CsylvaivCmallnltfviGafqqkqytsfvialvmsfsfs 47
                 sylv ++ m+l   tf + +   k+   +v+al  s sfs
  CCD26074.2 18 SSYLVVVLQMSLSYKTFNLLSNSGKKASPLVVALAYSSSFS 58
                59**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      538  (0.0300073); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 3710.28
//
Query:       CCD26075.2  [L=420]
Description: hypothetical protein NDAI_0G02980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.6e-165  550.0   0.0   4.1e-165  549.8   0.0    1.0  1  Arginosuc_synth  Arginosuccinate synthase
    0.00053   19.5   0.0    0.00099   18.7   0.0    1.4  1  QueC             Queuosine biosynthesis protein QueC
  ------ inclusion threshold ------
      0.011   14.6   0.0      0.017   13.9   0.0    1.3  1  tRNA_Me_trans    tRNA methyl transferase


Domain annotation for each model (and alignments):
>> Arginosuc_synth  Arginosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  549.8   0.0  6.9e-169  4.1e-165       1     387 [.       7     407 ..       7     408 .. 0.97

  Alignments for each domain:
  == domain 1  score: 549.8 bits;  conditional E-value: 6.9e-169
  Arginosuc_synth   1 vLaysGGlDtsviikllkeklgeeviavavdvGqeeedldevkekalklgavksvvvDakeefvedyifpaikanalYedrYllgtalaRPlia 94 
                      +LaysGGlDts+i+++l +++ +ev+a++++vGqe ed+d++kekalk+ga+k+v+vD++++fv d++fpa++ na+Yed Yllgt+laRP+ia
       CCD26075.2   7 CLAYSGGLDTSIILAWLLDEG-YEVVAFMANVGQE-EDFDAAKEKALKIGATKFVCVDCRNDFVTDILFPAVQCNAVYEDVYLLGTSLARPVIA 98 
                      79******************9.*************.********************************************************** PP

  Arginosuc_synth  95 kklvevakkegaeavahGctGkGnDqvRfevsirslaPdlkviaPvRelelt.....ReeeieyakekgipvevtkkkpysiDenllgrsieag 183
                      k++++va++eg+ avahGctGkGnDq+Rfe+++++l+Pd+kviaP+R +e++     R++ +++a+ekgipv++tk+kp+s+Den++++s+eag
       CCD26075.2  99 KAQIDVAEQEGCFAVAHGCTGKGNDQIRFELGFYALKPDVKVIAPWRLPEFFerfagRKDLLDFAAEKGIPVAQTKSKPWSTDENQAHISYEAG 192
                      ***************************************************99***************************************** PP

  Arginosuc_synth 184 iLedpknappediyeltkdpakapdepeeveiefekGvPvald......geelsv...lelieklneiagkhGvGRiDivedRlvglksReiYe 268
                      iLedp+++pp+d+++lt dp++ap+ep++++i+fe+G+Pv++        + +sv    +++e+++++a+++GvGRiDivedR+++lksR++Ye
       CCD26075.2 193 ILEDPDTTPPKDMWKLTVDPMDAPNEPQDLSINFERGLPVKVSyndhatKKDVSVtapQDIFETVSNLARANGVGRIDIVEDRYINLKSRGCYE 286
                      ******************************************988888744444444689********************************** PP

  Arginosuc_synth 269 apaalvLikahkdlekltlerevakfkkiveek.yaelvYkGlwfsPlkealdafiektqervtGtvrvklfkGsvvvlgResees.lYdeela 360
                      +++++vL++ah dle ltl++ev+++++++ +  y++l+Y+G++fsP++e+++++i+ +qe v+Gtvrv+l+kG+v++lgR+s+++ lYd + +
       CCD26075.2 287 QAPLTVLRRAHVDLEGLTLDKEVRQLRDQFVTPtYSKLLYNGSYFSPECEYVRSMIQPSQETVNGTVRVRLYKGNVIILGRSSATEnLYDPTES 380
                      ***************************9877655*************************************************9877******* PP

  Arginosuc_synth 361 sydeedefdqkeaeGfikihglqakly 387
                      s+de + f +++++Gfi+i+++++k+y
       CCD26075.2 381 SMDELTGFLPTDTTGFIAIQAIRIKKY 407
                      ************************998 PP

>> QueC  Queuosine biosynthesis protein QueC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.6e-07   0.00099       4      55 ..       8      57 ..       5      76 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.6e-07
                EE--SSHHHHHHHHHHHHH-SEEEEEEEESS-TTSHHHHHHHHHHHHT--.- CS
        QueC  4 vllSGGlDSttvlalakkegkevealtfdYgqrhkkeleaakkiakelgvee 55
                +  SGGlD +++la+ ++eg+ev a   + gq ++ +  aak+ a ++g ++
  CCD26075.2  8 LAYSGGLDTSIILAWLLDEGYEVVAFMANVGQEEDFD--AAKEKALKIGATK 57
                557****************************987655..5555444555544 PP

>> tRNA_Me_trans  tRNA methyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.9e-06     0.017       2      44 ..       5      46 ..       4      68 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.9e-06
  tRNA_Me_trans  2 kvvvalSgGVDSsvaaallkeqgyevigvflklweeedeegke 44
                   kv+ a SgG D s+ +a l ++gyev++++ ++ +eed    +
     CCD26075.2  5 KVCLAYSGGLDTSIILAWLLDEGYEVVAFMANVGQEEDFDA-A 46
                   7999**********************986555555544433.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.22s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3277.54
//
Query:       CCD26076.2  [L=319]
Description: hypothetical protein NDAI_0G02990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-32  112.5   0.0    1.7e-15   57.2   0.0    3.1  3  His_Phos_1  Histidine phosphatase superfamily (branch 1)


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   9.7e-20   1.7e-15       1      69 [.      10      85 ..      10      90 .. 0.88
   2 !   20.4   0.1   1.8e-08   0.00032      69     119 ..     126     180 ..     116     196 .. 0.84
   3 !   31.5   0.0   7.6e-12   1.4e-07     107     190 ..     207     294 ..     185     296 .. 0.84

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 9.7e-20
                EEEEE---BTTB--....TT----B-HHHHHHHHHHHHHHTT.S---EE......EE-SSHHHHHHHHHHHHCTT- CS
  His_Phos_1  1 lyLvRHGetewnaegrlqgrtdvpLteeGreqAealaerlag.epidai......ysSplkRarqTaeliaealgl 69
                l+L+RHG++  n+e++++g+ d++Lte+G+ qA+ +a+ +++  + + +      ysS l R++qT+  i+e+ +l
  CCD26076.2 10 LFLLRHGQSNLNHENIFCGWIDAKLTEKGENQARNTAKLIQDyCQTNNVtlpqigYSSRLIRTQQTMDVILEQFNL 85
                78*************************************999833333346677*****************99886 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.8e-08
                 --EEE-GGGS----GGGTT-B.HHHHHH..HSHHHHHHHHH-GGG-B....S-BH CS
  His_Phos_1  69 lpveldegLrEidfGdweglttaeiaeeypeeleawlrdpadvrppg....gEsl 119
                 +++ ++ +L+E+++G w+g+ + +i ++y +e   + r++ + rpp+     E +
  CCD26076.2 126 VSILQTWRLNERHYGSWQGQRKPQILQQYGDEQYMYIRRDFNGRPPKvdlnLEMV 180
                 6788899*********************************999999854444444 PP

  == domain 3  score: 31.5 bits;  conditional E-value: 7.6e-12
                 HHH-GGG-BS-BHHHHHHHHHHHHH....HHHHHTTTSEEEEEE-HHHHHHHHHHHHT--GGGGGGB---TT-EEEEEE-SS-EEEEE CS
  His_Phos_1 107 dpadvrppggEsledvaaRvaaale....elaarhegetvlvVsHggvirallarllglpleelrrleldnaslsvlefdeggwrlvr 190
                 ++++++ p gEsl dv +R+ ++l+    ++a++h+ +  l+V Hg ++r++l+ l g++ ee++ ++++n    v+e+d+   ++vr
  CCD26076.2 207 ESNNEPLPCGESLCDVGKRLGPFLDnvvlKIAKDHHLDSSLIVGHGSTVRSALKMLEGISDEEIKGIDIPNGIPLVIELDRASLKFVR 294
                 334445566****************88889999999999********************************99999999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       474  (0.0264376); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2387.68
//
Query:       CCD26077.2  [L=514]
Description: hypothetical protein NDAI_0G03000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-06   27.8   2.4     0.0079   16.6   0.3    3.0  2  zf-C2H2       Zinc finger, C2H2 type
     0.0057   17.4   6.9        1.5    9.9   0.1    3.4  3  zf-C2H2_4     C2H2-type zinc finger
  ------ inclusion threshold ------
       0.12   12.8   1.3        4.2    8.0   0.1    2.9  2  zf-H2C2_2     Zinc-finger double domain
       0.37   10.9   4.7        1.9    8.5   0.1    3.2  3  zf-C2H2_6     C2H2-type zinc finger
        3.9    8.2   6.4        5.4    7.7   3.6    2.6  2  zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
        4.3    7.2   5.6        7.1    6.5   0.0    3.3  3  zf-C2H2_11    zinc-finger C2H2-type


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.3   2.6e-06    0.0079       5      23 .]     432     451 ..     420     451 .. 0.88
   2 !   10.1   0.1    0.0003       0.9       8      23 .]     474     490 ..     458     490 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 2.6e-06
                 TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   5 dCgksFkrksnLkrHirt.H 23 
                  Cg +F+r ++L+rH++t H
  CCD26077.2 432 LCGAKFSRTYDLTRHQNTiH 451
                 7*****************99 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0003
                 EEESSHHHHHHHHHC.C CS
     zf-C2H2   8 ksFkrksnLkrHirt.H 23 
                 k+F+r + L rH++t H
  CCD26077.2 474 KTFSRLDALSRHLKTkH 490
                 9**************99 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00049       1.5       5      24 .]     432     451 ..     430     451 .. 0.93
   2 ?   -1.5   0.1       2.3   6.8e+03       1       8 [.     458     465 ..     458     471 .. 0.79
   3 !    9.6   0.4   0.00061       1.8       8      24 .]     474     490 ..     473     490 .. 0.94

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00049
   zf-C2H2_4   5 iCgksFsskkaLlrHlkthH 24 
                 +Cg+ Fs+ ++L rH +t H
  CCD26077.2 432 LCGAKFSRTYDLTRHQNTIH 451
                 7**************99988 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.3
   zf-C2H2_4   1 fkCpiCgk 8  
                 f+C +C k
  CCD26077.2 458 FRCLQCIK 465
                 89****55 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.00061
   zf-C2H2_4   8 ksFsskkaLlrHlkthH 24 
                 k+Fs+ +aL+rHlkt H
  CCD26077.2 474 KTFSRLDALSRHLKTKH 490
                 89*************99 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.1    0.0014       4.2       1      24 [.     442     467 ..     442     468 .. 0.87
   2 ?    2.8   0.1     0.062   1.9e+02       1       9 [.     481     490 ..     481     498 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0014
   zf-H2C2_2   1 nLrrHirk.Htgekp.yeCplCdkaF 24 
                 +L+rH+ + H +e+  + C  C k F
  CCD26077.2 442 DLTRHQNTiHAKERTvFRCLQCIKLF 467
                 69****977****877******9987 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.062
   zf-H2C2_2   1 nLrrHir.kH 9  
                 +L+rH++ kH
  CCD26077.2 481 ALSRHLKtKH 490
                 79*****558 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.087   2.6e+02       7      21 ..     433     447 ..     431     454 .. 0.83
   2 ?    0.5   0.1      0.22   6.4e+02       1      11 [.     457     467 ..     457     468 .. 0.89
   3 ?    8.5   0.1   0.00065       1.9       9      25 ..     474     490 ..     473     491 .. 0.91

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.087
   zf-C2H2_6   7 CsksFpslqaLggHk 21 
                 C++ F+  ++L+ H 
  CCD26077.2 433 CGAKFSRTYDLTRHQ 447
                 ***********9996 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.22
   zf-C2H2_6   1 vheCsvCsksF 11 
                 v++C +C k F
  CCD26077.2 457 VFRCLQCIKLF 467
                 79*****9999 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00065
   zf-C2H2_6   9 ksFpslqaLggHkksHr 25 
                 k+F+ l+aL  H+k+ +
  CCD26077.2 474 KTFSRLDALSRHLKTKH 490
                 9*************966 PP

>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.6    0.0018       5.4      56     125 ..     375     451 ..     340     452 .. 0.62
   2 ?    0.5   0.1      0.31   9.4e+02      17      66 ..     451     502 ..     448     510 .. 0.69

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0018
  zf-C2H2_3rep  56 hpsdfklskvaqkknlsasedssqklelsksasve.......nnsenesgvrkfvcrfcGlkfdllpdlGrhhqaah 125
                   + s+ k+s+ ++k++ls++ d ++ l+++k++ v+       n+    s ++  +  +cG kf    dl rh ++ h
    CCD26077.2 375 KLSKSKSSNKENKEHLSKTTDNNKSLSNKKKSEVSipncqysNEIYMCSIINSKTKELCGAKFSRTYDLTRHQNTIH 451
                   4445555566666666665555555444444444211110112222233344444579**************99887 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.31
  zf-C2H2_3rep  17 hvqerhhvqfveqclllqcipcgshfgnaeelwlhvlsvhp..sdfklskva 66 
                   h +er   + ++  +l+  +     f+  + l  h+ + h   +df+ ++v+
    CCD26077.2 451 HAKERTVFRCLQCIKLFGGVGQEKTFSRLDALSRHLKTKHIdlTDFQRKEVT 502
                   7777777777766678888888888888999999988877522466555554 PP

>> zf-C2H2_11  zinc-finger C2H2-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0024       7.1       9      28 ..     432     451 ..     431     451 .. 0.89
   2 ?    0.5   0.1      0.18   5.3e+02       5      10 ..     458     463 ..     454     467 .. 0.84
   3 ?    0.0   0.3      0.25   7.6e+02      19      25 ..     481     487 ..     476     490 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0024
  zf-C2H2_11   9 eCGlcftSqlsLsRHlfIvH 28 
                 +CG +f+    L RH   +H
  CCD26077.2 432 LCGAKFSRTYDLTRHQNTIH 451
                 7**************87766 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.18
  zf-C2H2_11   5 cqCleC 10 
                 ++Cl+C
  CCD26077.2 458 FRCLQC 463
                 79**** PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.25
  zf-C2H2_11  19 sLsRHlf 25 
                 +LsRHl 
  CCD26077.2 481 ALSRHLK 487
                 69***96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2060  (0.114898); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3647.47
//
Query:       CCD26078.2  [L=556]
Description: hypothetical protein NDAI_0G03010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-80  268.0   0.3      9e-80  267.6   0.3    1.2  1  Phos_pyr_kin  Phosphomethylpyrimidine kinase
    2.2e-60  204.1   0.3    3.1e-60  203.6   0.3    1.2  1  TENA_THI-4    TENA/THI-4/PQQC family
     0.0013   18.2   0.2     0.0025   17.2   0.2    1.4  1  HK            Hydroxyethylthiazole kinase family
     0.0031   16.8   0.1     0.0089   15.4   0.1    1.6  1  PfkB          pfkB family carbohydrate kinase
  ------ inclusion threshold ------
       0.14   11.7   0.1       0.29   10.6   0.0    1.6  2  Carb_kinase   Carbohydrate kinase


Domain annotation for each model (and alignments):
>> Phos_pyr_kin  Phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.6   0.3   2.5e-83     9e-80       1     243 [.      34     288 ..      34     295 .. 0.94

  Alignments for each domain:
  == domain 1  score: 267.6 bits;  conditional E-value: 2.5e-83
                   ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTCEEEEEE--HHHHHHHHHHHHHTS--SEEEE-S--SHHHHHHHHHHHHH...TTS.SEEEE- CS
  Phos_pyr_kin   1 DssGGAGiqADlktfsalgvygmsvitaltaqntkgvkevhplpaelveaqleavledvkvdavKiGmlasaeiievvaeklkk...ykv.pvVlDP 93 
                   DssGGAGi+ADlkt+sa+++ygm+++talt+q++ +v ++h +p++++++ ++  l+d++++++K+Gml + ++i+v+aekl++   ++   +V+DP
    CCD26078.2  34 DSSGGAGIEADLKTISAHRCYGMTCMTALTIQTPVKVFGIHLTPKDVLKQIIDVNLRDMRCNVIKTGML-TLDAIDVLAEKLNSmdpKEKpLLVVDP 129
                   9********************************************************************.88999******955243333479**** PP

                   --SSCTSSSBSSHHHHHHHHHHTGGG-SEEE-BHHHHHHHHT..---SSHHHHHHHHHHHHH.TT-SEEEEEEGGS-S....SSEEEEEEEE..TSS CS
  Phos_pyr_kin  94 VmvaksgselleeeavealkeeLlplatvitPNlpEaeaLlg..ekikteedmkeaakkllk.lgakaVlikGghleg....eeavvtdvly..dge 181
                   V+va+sgs+l+ +e v+++ke++ pla+v+tPN+pE+ +L+g   ki++++d+++ a+++++ +++++Vl+kGgh++     +e+++tdvl+  d++
    CCD26078.2 130 VLVATSGSTLAGDELVQLIKEKITPLANVLTPNIPECFKLIGenVKIESLDDVRQLAERVSDvTKCSNVLVKGGHIPWdkngSEKYITDVLLmrDEQ 226
                   ******************************************777888**************99***********9555667999******99999* PP

                   EEEEEEEE----S--BTHHHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHCG-BSTSSS- CS
  Phos_pyr_kin 182 eveeleaerietknthGtGCtlssaiaaelakgesleeAvkkAkeyvteaikealelgkgag 243
                   +++ ++++ ++t+nthGtGCtl+saia++la+g+sl ++v+ + eyv++a+  ++++ k + 
    CCD26078.2 227 KFVVFKGHFVDTTNTHGTGCTLASAIASNLARGYSLCQSVYGGIEYVQNAVTIGCQVTKSHV 288
                   ****************************************************9999987764 PP

>> TENA_THI-4  TENA/THI-4/PQQC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.6   0.3   8.5e-64   3.1e-60       2     209 ..     345     555 ..     344     556 .] 0.98

  Alignments for each domain:
  == domain 1  score: 203.6 bits;  conditional E-value: 8.5e-64
                 HHCHHHHHHHHCSHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSHHHHHHHHHHHHHHHHCHHHHH.HHHHHHTT-HHHH.HCTTT- CS
  TENA_THI-4   2 aqlrpiwkeyinHpFvkalakGtlpreqfqayviqdylylknfvrvlaiilskssdlevrrelesrivdhdgeeielh.lrlaealGlsree.lsktkp 98 
                 + ++p+w++yinH+Fvk++a+G+l+r +fq++v+qdy yl++++rv+++++sk+++le++ e+e  iv  +++e++ h +rl e +G++++e + ++ +
  CCD26078.2 345 PFVKPHWQSYINHEFVKKIADGSLDRRKFQFFVEQDYSYLIDYARVHCVAGSKAPTLEDM-EKELEIVGGVKQEMDHHeKRLREDFGVKDDEyFANITR 442
                 6689********************************************************.************************************** PP

                 -HHHHHHHHHHHHHHCHS-HHHHHHHHHHHHHHHHHHHHHHCCHHH..S-TSCHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH CS
  TENA_THI-4  99 spatkayvrylldlarrgslaeavaallpclfvyqeiaerlkeklr..alegpeyyewvkeyaseefraaveeakrllerllakvsdeqleelqeiflk 195
                  pa+kay+ry+ d++rrg+++e+vaal+pcl++y +++  + + ++  + + p y+ w + y+s+++r+a++++k ll+ +  ++++eql++l +if +
  CCD26078.2 443 GPALKAYSRYFNDISRRGNWQELVAALTPCLMGYGYALYTFEKQITvtNESMPLYHGWLEVYSSAWYREAMAKGKVLLNNISMTYPQEQLDTLVTIFGE 541
                 **************************************99999999999999*********************************************** PP

                 HHHHHHHHHHHHHT CS
  TENA_THI-4 196 alefetsfltmald 209
                 ++e+et+f+++al+
  CCD26078.2 542 VCELETKFWDAALE 555
                 **********9998 PP

>> HK  Hydroxyethylthiazole kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2     7e-07    0.0025      54     202 ..      96     260 ..      91     292 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 7e-07
                 EEE-TT--HHHHHHHHHHHHHHHHTT--E.EEE-T..TBTTBHHHHHHHHHHHHHS-...-SEEEEEHHHHHHHHTSSCCSCSSSSSS-SHH..H.HHH CS
          HK  54 llNiGtleekaiealkaAvksakevnrPv.vlDPV..gvgAtelRrelalellkevk...lavikGNasEilslaglelkvkGvDskeaata..a.vaa 143
                 ++ +G l+  ai++l +  +s   +++P+ v+DPV  +++ ++l  +   +l+ke      +v+  N  E  +l+g+++k+  +D   + ++    v+ 
  CCD26078.2  96 VIKTGMLTLDAIDVLAEKLNSMDPKEKPLlVVDPVlvATSGSTLAGDELVQLIKEKItplANVLTPNIPECFKLIGENVKIESLDDVRQLAErvSdVTK 194
                 7999************************6378**7335666777777778888765422247999********************99887773313555 PP

                 HHHHHHHHTSEEE.EESSSEEEEES.....SEEEEEE-S-GG.GGGSTTHHHHHHHHHHHHHTTBS CS
          HK 144 vqkvAqklrvvvv.vtGevDvvsdg.....kkvyklknGtel.lgkitasGCllgsvvaaflavkk 202
                   +v +k + +     G   +++d      ++ +++  G+ +  ++  ++GC+l+s++a+ la   
  CCD26078.2 195 CSNVLVKGGHIPWdKNGSEKYITDVllmrdEQKFVVFKGHFVdTTNTHGTGCTLASAIASNLARGY 260
                 556666666664326788888888522222446677777766256778************998654 PP

>> PfkB  pfkB family carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   2.5e-06    0.0089     147     279 ..     110     266 ..      95     278 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.5e-06
                 HHHHHHHHHHHTTE...EEEEECESSSHH.....HHHHHHHHH.CTESEEEEEHHHHHHHHTSCT..HSHHHHHHHHHHHHHTTS.SEEEEEEGGGEEE CS
        PfkB 147 vleelaeaaknggt...fdpnlldplgaq.....fkeallell.aladllkpneeElealtgekl..edieealaalhklkakga.ktvvvtlGkeGal 233
                 + e+l ++  +++    +dp+l++++g+       ++ ++e + +la++l+pn  E  +l ge+   e+ +++ ++++ +    + ++v+v+ G  +  
  CCD26078.2 110 LAEKLNSMDPKEKPllvVDPVLVATSGSTlagdeLVQLIKEKItPLANVLTPNIPECFKLIGENVkiESLDDVRQLAERVSDVTKcSNVLVKGGHIPWD 208
                 5677777888888888899********99999998888888888********************99988888888888887777789*****9965544 PP

                 EEE...........TTEEEEEEE..SSSS-SBGTTHHHHHHHHHHHHHHTTHHHHHHH CS
        PfkB 234 vve...........kdgelkvpav.pkvkvvDttGAGDsfvggflaallegksleeal 279
                               +d++ +v      v+  +t G+G + +++++++l++g sl +++
  CCD26078.2 209 KNGsekyitdvllmRDEQKFVVFKgHFVDTTNTHGTGCTLASAIASNLARGYSLCQSV 266
                 4444444467899844444444311335666666******************998876 PP

>> Carb_kinase  Carbohydrate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     8e-05      0.29      86     163 ..     126     203 ..      27     215 .. 0.55
   2 ?   -3.5   0.0       1.6   5.8e+03     186     209 ..     241     264 ..     225     275 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 8e-05
                  HCHHHCCCCS-EEEEGGGGGSGGGG...TTTTSSEEEE--HHHHHHHCTTTCH..HCCSHHHHHHHHHHHHTTE.EEEEST CS
  Carb_kinase  86 lleevlekdeplviDAdgLnllaqknelserkaeviLTPhkkEfkrLlkaivk..keddrlelarelaqklnav.vllkge 163
                  +++ vl +  +  + +d L +l ++   +    + +LTP++ E  +L++  vk  + dd+ +la+++++  ++  vl+kg 
   CCD26078.2 126 VVDPVLVATSGSTLAGDELVQLIKE---KITPLANVLTPNIPECFKLIGENVKieSLDDVRQLAERVSDVTKCSnVLVKGG 203
                  3333333333333444444444443...33445679*************99998889999999999999888753666665 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.6
                  STTHHHHHHHHHHHHHHCTSSHHH CS
  Carb_kinase 186 kGGsGDvLaGligalLaqneasye 209
                  + G+G +La +i++ La  ++  +
   CCD26078.2 241 THGTGCTLASAIASNLARGYSLCQ 264
                  558899999999888887766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 3863.71
//
Query:       CCD26079.2  [L=1495]
Description: hypothetical protein NDAI_0G03020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.5e-131  436.4   3.8   7.5e-131  436.4   3.8    3.0  4  Oxysterol_BP     Oxysterol-binding protein
    5.2e-10   39.4   1.7    0.00072   19.8   0.1    3.6  3  Ank_5            Ankyrin repeats (many copies)
      1e-09   38.9   0.3    3.4e-09   37.2   0.3    2.0  1  PH               PH domain
    1.2e-09   38.6   0.2    0.00011   22.7   0.1    2.7  2  Ank_2            Ankyrin repeats (3 copies)
      8e-09   35.9   0.1     0.0013   19.3   0.0    3.5  3  Ank_4            Ankyrin repeats (many copies)
    2.6e-08   33.5   0.2      0.046   14.3   0.0    4.1  4  Ank_3            Ankyrin repeat
      1e-07   32.1   1.2    1.3e-06   28.6   0.1    2.8  2  PH_8             Pleckstrin homology domain
    2.5e-06   27.7   0.0      0.012   16.0   0.1    3.1  2  Ank              Ankyrin repeat
  ------ inclusion threshold ------
      0.025   15.0   0.5      0.025   15.0   0.5    4.2  4  PH_11            Pleckstrin homology domain


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.6   7.4         9   1.8e+04     219     234 ..     691     706 ..     577     789 .. 0.46
   2 ?   -4.7   1.8       3.9   7.9e+03     276     291 ..     915     930 ..     867     996 .. 0.50
   3 ?   -2.5   1.3      0.85   1.7e+03     239     293 ..     973    1026 ..     958    1049 .. 0.51
   4 !  436.4   3.8  3.8e-134  7.5e-131       1     373 []    1087    1481 ..    1087    1481 .. 0.90

  Alignments for each domain:
  == domain 1  score: -7.6 bits;  conditional E-value: 9
                   S-EEEEEEEETTTEEE CS
  Oxysterol_BP 219 kevlyeisGkwdeely 234
                   +e+l   + +++e+ +
    CCD26079.2 691 QENLNDNESHHNEQEE 706
                   1111111111111111 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 3.9
                   --...GGG--HHHHCC CS
  Oxysterol_BP 276 pkaeeyygftkfavtl 291
                   +k++++++ t+   + 
    CCD26079.2 915 NKYTKMMNSTESNAQG 930
                   2222222222222222 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.85
                    TSTTS--EEEEETT-BSXXGCGSSTTBCCCCCCH-----...GGG--HHHHCCT- CS
  Oxysterol_BP  239 ktekkeeeedasekskvkekeeqeefeseklWkasplpkaeeyygftkfavtlNe 293 
                    ++e+++ +e+ s++++ ++k eq+ +e+e++  ++  ++  + ++ t  ++t   
    CCD26079.2  973 EQEQEQVQEQDSTNTTPQPKIEQSIEEQETIVAEK-TNEPIKIFNTTVTTTTTTT 1026
                    22222222222222355555555555555555552.2333456666555555522 PP

  == domain 4  score: 436.4 bits;  conditional E-value: 3.8e-134
                    HHHCCHTTSTT-BCCCS---GGGEEEEEHHHHHHHCCTTCHHHHHHHC.SSHHHHHHHHHHHHHHCCCGCTSTSSSEEE---TT-EEEEEETTCE CS
  Oxysterol_BP    1 slwsilkkciGkDLskislPvffneplSlLqrlaedleyselLdkaakeddsleRlayVaaFalSsyastikrrlkKPFNPlLGEtfelvredkg 95  
                    slws+lk+++GkD++k++lPv+fnep+SlLqr++edleys+lLd+aa+ +ds+ Rl+yVaaF+ S y+st  +r++KPFNPlLGEtfe+++++ +
    CCD26079.2 1087 SLWSVLKSMVGKDMTKMTLPVTFNEPTSLLQRVSEDLEYSQLLDQAASFNDSTLRLLYVAAFSASIYSSTT-NRIAKPFNPLLGETFEYTNPNAS 1180
                    79**********************************************888*******************9.8********************** PP

                    EEEEEEEEETTTTEEEEEEEECTEEEEEEEEEEEEE-SSEEEEEE-SEEEEEEEEE........SEEEEEEE--EEEEE-TTTTS-EEEEEEEEE CS
  Oxysterol_BP   96 frfiaEQVsHhPpvsAfhaesegweldgeikvkskflgkslevkpeGtahlellkk........sgehYtwtkpttivhniivgklwvelsgeve 182 
                    +rf++EQVsHhPp+sA+++es++w ++ge++v++kf g+s+ vk+ G ++++++++        ++e Yt++kp  +v +i+vg++ ++++gev+
    CCD26079.2 1181 YRFFTEQVSHHPPISATWTESPKWDFYGESRVEMKFNGRSFGVKHLGLWYIKMRPDnnmneeeeEEEIYTFKKPDNSVIGILVGNPQLDNHGEVK 1275
                    *****************************************************43357899998999**************************** PP

                    EEETTT--EEEEEEE---SSS---SSEEEEEEEETTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT...-BSXXGCGSSTTBCCC...... CS
  Oxysterol_BP  183 itnhstgdkakleFkkkglfsskksnkvegkvkdkkkevlyeisGkwdeelyikkkktekkeeeedasek...skvkekeeqeefesek...... 268 
                    i+nh+tgd+++l+Fk++g+  s  +++v+g +++k++e+++ + G+w++ +y+kk +++++ ++ + +++   ++ +++++ +++++        
    CCD26079.2 1276 IKNHKTGDYCILNFKARGWT-SAGAYEVKGDIYNKNNEKIWVLGGHWNDAIYAKKITNKNT-SDLKLDNNnniNNLHPNTNLSTNNNSSsrdngp 1368
                    ******************99.589*****************************77655443.344444442352333333333332222445678 PP

                    ........CCCH-----...GGG--HHHHCCT---.TT.GGS-TTBGGG-HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCCTT.----SSEE CS
  Oxysterol_BP  269 ........lWkasplpkaeeyygftkfavtlNeieeke.kslaptDsRlRpDqraleegdideAeeeKkrlEekQRerrkereekk.ewkpkwFe 353 
                            +Wk +++   e+++++t+fa+tlN  +++  + laptDsRlRpDqra+e+g++d A+ee++rlEekQR+ rkere+++ +++p+wF 
    CCD26079.2 1369 rydgtkfmIWKTNER--IESPFNLTPFAITLNAPQPHLiPYLAPTDSRLRPDQRAMEDGKYDIAAEERNRLEEKQRAVRKEREKTGkKYQPQWFV 1461
                    88888888****766..347***************9889*******************************************666548******* PP

                    EEETTTTSSCEEEC-S-HHH CS
  Oxysterol_BP  354 kekdpdtgeevwkykgeywe 373 
                    k+ +p+t+e +w+y+geyw+
    CCD26079.2 1462 KDVHPVTNEPYWRYNGEYWK 1481
                    *******************6 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.1     1e+04      15      29 ..      43      57 ..      41      58 .. 0.83
   2 !   19.8   0.1   3.6e-07   0.00072       8      38 ..     262     292 ..     261     302 .. 0.90
   3 !   16.9   0.0   2.9e-06    0.0057       5      54 ..     363     408 ..     350     410 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.1
       Ank_5 15 ggntpLhvAakygaa 29
                 ++t +h+ ++++a 
  CCD26079.2 43 TSYTYIHTYIHRRAY 57
                579*******98875 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 3.6e-07
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlar 38 
                 d+n +d++gntpLh+Aa++ + ++v +L+++
  CCD26079.2 262 DINQRDKNGNTPLHLAAYQSRNEIVTILMDH 292
                 7899*********************999955 PP

  == domain 3  score: 16.9 bits;  conditional E-value: 2.9e-06
       Ank_5   5 gpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                   +d+ + d    t+Lh  +k++   ++r+Ll++gad++ +d  G++++ 
  CCD26079.2 363 NGMDPETGD----TVLHEFVKKRDVIMCRWLLEHGADPFKRDVKGKLPIN 408
                 346666666....********************************99975 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.3   1.7e-12   3.4e-09       3     105 .]     498     593 ..     496     593 .. 0.91

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.7e-12
                 EEEEEEEETSSSSCSEEEEEEEEE.TTEEEEESSTTCTTESSEEEEEESTTEEEEEEECTTSSSSTSEEEEEESTSSSTEEEEEEESSHHHHHHHHHHH CS
          PH   3 keGwLlkkgsgkkkswkkrwfvLk.dsellyykndksekdkepkgsislsncevvevvatedpkrkfcfelriverngsrtyllqasseeerkeWikai 100
                  +G+L+k+++    ++k rwf+L+ d++l+yy ++ s+++   +gs++ls+c         d+ +k +fe++  ++++  +++l+ + + e ++W+ +i
  CCD26079.2 498 FKGYLKKWTNFAQ-GYKLRWFILSeDGRLSYYIDQ-SDTKNACRGSLNLSSCNLHL-----DSSEKLKFEIIGGTNGS-IRWHLKGNHPIETSRWVWTI 588
                 69*******9988.**********5555*******.99****************87.....9*********8887666.******************** PP

                 HHHHH CS
          PH 101 qsaik 105
                 q ai+
  CCD26079.2 589 QGAIR 593
                 99885 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1   5.7e-08   0.00011       9      79 ..     200     295 ..     193     302 .. 0.69
   2 !   12.9   0.0   6.6e-05      0.13      14      56 ..     358     406 ..     346     409 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 5.7e-08
       Ank_2   9 nlelvklLl.eg.....adpn.k.ngktaLhyAakngnleivklLleh..................adndgrtpLhyAarsghleivklLlekgadi 79 
                 +l+l+  Ll ++     +dpn +   k +L yA++   +++vk ++++                   d++g+tpLh+Aa +++ eiv +L+++  +i
  CCD26079.2 200 DLQLLTTLLtSSqftplNDPNvHeVTKLILNYAVQLAPTQLVKDIINNfinpqpsenpliildinqRDKNGNTPLHLAAYQSRNEIVTILMDH-PKI 295
                 5556666665223444466666345578899999987778888888744555666677777665544499*********99999******977.243 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 6.6e-05
       Ank_2  14 klLl.egadpnkngktaLhyAakngnleivklLleh......adndgrtp 56 
                 +lL  +g dp+ +g t+Lh ++k+ ++ ++++Lleh       d +g+ p
  CCD26079.2 358 QLLDiNGMDPE-TGDTVLHEFVKKRDVIMCRWLLEHgadpfkRDVKGKLP 406
                 55536888887.9***********988889*****995554433666655 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   6.5e-07    0.0013       7      51 ..     231     286 ..     227     289 .. 0.87
   2 !   11.9   0.0   0.00013      0.26       2      32 ..     371     400 ..     349     408 .. 0.77
   3 ?   -1.1   0.0       1.6   3.2e+03       5      30 ..    1129    1155 ..    1125    1160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 6.5e-07
       Ank_4   7 yaaisgrlelvrlLlekgad............inaqdnrsGetalhiAakrgnveil 51 
                 ya++  +++lv+ ++++ ++            in + +++G+t+lh Aa+ ++ ei+
  CCD26079.2 231 YAVQLAPTQLVKDIINNFINpqpsenpliildINQR-DKNGNTPLHLAAYQSRNEIV 286
                 78889999999999999999999999999999****.************99875555 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00013
       Ank_4   2 ltaLhyaaisgrlelvrlLlekgadinaqdn 32 
                  t+Lh  +++ ++ ++r+Lle+gad+ ++ +
  CCD26079.2 371 DTVLHEFVKKRDVIMCRWLLEHGADPFKR-D 400
                 57788888888888888888888888777.4 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 1.6
       Ank_4    5 LhyaaisgrlelvrlLl..ekgadinaq 30  
                  L  +a+s++  ++rlL+  ++ a+i+ +
  CCD26079.2 1129 L-DQAASFNDSTLRLLYvaAFSASIYSS 1155
                  3.45669999999999987667887765 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.1   2.1e+03       5      29 ..     228     251 ..     226     252 .. 0.87
   2 !   13.4   0.0   4.5e-05      0.09       1      27 [.     269     295 ..     269     296 .. 0.90
   3 !   14.3   0.0   2.3e-05     0.046       2      29 ..     370     396 ..     369     397 .. 0.95
   4 ?   -3.3   0.0         9   1.8e+04       5      21 ..    1128    1143 ..    1128    1144 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 1.1
       Ank_3   5 pLhlAarsgnleivkfLlenkgadv 29 
                 +L +A+  +++ +vk +++ + +++
  CCD26079.2 228 ILNYAVQLAPTQLVKDIIN-NFINP 251
                 699****************.67765 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 4.5e-05
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 nG+tpLhlAa + + eiv  L +++ +
  CCD26079.2 269 NGNTPLHLAAYQSRNEIVTILMDHPKI 295
                 7***************99999997766 PP

  == domain 3  score: 14.3 bits;  conditional E-value: 2.3e-05
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G t Lh+ ++  ++ ++++Lle +gad+
  CCD26079.2 370 GDTVLHEFVKKRDVIMCRWLLE-HGADP 396
                 89********************.9**97 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 9
       Ank_3    5 pLhlAarsgnleivkfL 21  
                  +L +Aa++++ + +++L
  CCD26079.2 1128 LLDQAASFNDST-LRLL 1143
                  5889*****999.7776 PP

>> PH_8  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.1   6.6e-10   1.3e-06       4      86 ..     502     589 ..     500     592 .. 0.81
   2 ?    0.9   0.1      0.28   5.5e+02       4      42 ..    1445    1485 ..    1443    1491 .. 0.77

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 6.6e-10
        PH_8   4 lkkrrkklqgyakRfFvLdlksstlsYyrddnss..alrgkiplslaiisan.eekreiiidsGae...vWeLkasnekdfqeWveale 86 
                 lkk    +qgy+ R+F+L  + + lsYy d+ ++  a rg++ ls + +  + +ek ++ i  G++    W+Lk++   + ++Wv +++
  CCD26079.2 502 LKKWTNFAQGYKLRWFIL-SEDGRLSYYIDQSDTknACRGSLNLSSCNLHLDsSEKLKFEIIGGTNgsiRWHLKGNHPIETSRWVWTIQ 589
                 67888889**********.899*******998765699********966665156667777766543326**************98775 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.28
        PH_8    4 lkkrrkklqgyakRfFvLdlksstlsYyrddnss..alrgk 42  
                   k r k ++ y+  +Fv d++  t + y   n++  +lr +
  CCD26079.2 1445 RKEREKTGKKYQPQWFVKDVHPVTNEPYWRYNGEywKLRKQ 1485
                  69999**************9988777665566555677766 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     6e-06     0.012       1      23 [.     269     292 ..     269     302 .. 0.77
   2 !    8.2   0.0    0.0018       3.5       2      31 ..     370     400 ..     369     401 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 6e-06
                 TSBBHHHHHH...HHTTHHHHHHHH.T CS
         Ank   1 dGnTPLHlAa...tngkkriiklLL.h 23 
                 +GnTPLHlAa   +n   +i+  L  h
  CCD26079.2 269 NGNTPLHLAAyqsRN---EIVTILMdH 292
                 8*********66555...599988754 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0018
                 SBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 G+T+LH  +   ++ ++++LL hGA++  +d
  CCD26079.2 370 GDTVLHEFVKKRDVIMCRWLLeHGADPFKRD 400
                 99****88955557788*********98887 PP

>> PH_11  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.5   1.3e-05     0.025       2      57 ..     499     555 ..     498     591 .. 0.67
   2 ?   -2.1   1.0       2.5     5e+03      52      78 ..     624     664 ..     595     683 .. 0.50
   3 ?   -1.5   0.1       1.8   3.5e+03      75     103 ..     820     848 ..     788     850 .. 0.77
   4 ?   -1.6   1.1       1.8   3.6e+03      17      84 ..     843     917 ..     832     933 .. 0.44

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.3e-05
       PH_11   2 kGyl..kkkgskaWkrrwfavlkdgvLeyYksekkkvvkhviklSngseaklkadlis 57 
                 kGyl  + + ++++k rwf++ +dg+L+yY ++ +   +  +   n s++ l+ d ++
  CCD26079.2 499 KGYLkkWTNFAQGYKLRWFILSEDGRLSYYIDQSDTK-NACRGSLNLSSCNLHLDSSE 555
                 677611456667*******999********9777655.23344444455555544444 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.5
       PH_11  52 kadlisaalfkidsirs..............sksddlllei 78 
                 + ++i+++  ++++ ++               +s++  ++ 
  CCD26079.2 624 NSQIIRQSSATVANHNNttgdpmktrkrkstMTSSSTTTTT 664
                 44444444444444444333333221100112333333333 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.8
       PH_11  75 lleistetkifflkgdsneeteeWvealk 103
                 +++   + k + +  ++++  + W++++k
  CCD26079.2 820 DITSKRDKKLLNMLDKQKDVNNVWIQSMK 848
                 45666788889999999999999*99998 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 1.8
       PH_11  17 wfavlkdgvLeyYksekkkv.....vkhviklSngseaklkadlisaalf..kidsirssksddllleistetki 84 
                 w+  +kd  +e+ +++k  v      kh++k+ + +   + +   +  ++  +  ++ s+ +++l  ++ t+ k 
  CCD26079.2 843 WIQSMKDLEMELIDKDKRLVsldkeRKHLKKMLQKKLLEIDTTTNDLTTTtgTTTRSSSNFNQQLSETQTTDNKY 917
                 666666667776666665553333333333333332222222222222222222222223333333344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2655  (0.148084); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                        49  (0.002733); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.39u 0.31s 00:00:01.70 Elapsed: 00:00:00.50
# Mc/sec: 8947.03
//
Query:       CCD26080.2  [L=1119]
Description: hypothetical protein NDAI_0G03030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-74  251.1   3.2    5.8e-74  248.8   0.1    2.5  2  Pkinase         Protein kinase domain
    5.9e-53  179.8   0.0    1.1e-52  178.9   0.0    1.5  1  Pkinase_Tyr     Protein tyrosine kinase
      8e-05   22.1   0.0    0.00093   18.6   0.0    2.3  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.037   12.8   3.4       0.23   10.2   3.4    2.4  1  Pkinase_fungal  Fungal protein kinase
        1.4    9.5   5.5        0.3   11.8   0.7    2.5  2  MRP-63          Mitochondrial ribosome protein 63


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.8   0.1   1.6e-77   5.8e-74       1     264 []      59     305 ..      59     305 .. 0.94
   2 ?    2.2   0.6     0.026        94      21     110 ..     856     956 ..     838     960 .. 0.77

  Alignments for each domain:
  == domain 1  score: 248.8 bits;  conditional E-value: 1.6e-77
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseee 99 
                 y+ ++ +G+Gs+G+Vyka++k+t++ vA+K+i+ +++++ +e  +++Ei +lk+l+h niv++ ++++++++ly++le+++ g+l+++++    ++e +
  CCD26080.2  59 YQLKKVIGQGSYGVVYKAINKKTSQLVAIKEINYHNNDDLNE--IMSEIDLLKNLNHTNIVKYHGFIQKSSSLYIILEFCSLGSLKNMISSGHGIPEFN 155
                 78899********************************99887..**********************************************9999***** PP

                 HHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 100 akkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfs 198
                 ak ++kq+l+gl+ylH++g+iHrD+K +N+L++ ++ +K++DFG++++++++   ++  g+ ++++PE+l++++ s+ +D+WslG +++elltg ppfs
  CCD26080.2 156 AKTYIKQTLNGLNYLHNQGVIHRDIKAANLLLNAERIVKLADFGVSTRVTNTA--MTLAGSLNWMSPEILGNRGASTLSDIWSLGSTVVELLTGDPPFS 252
                 *********************************9999**************75..9******************************************* PP

                 TSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 199 gekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 + ++++ ++  +            ++ ++  ++++s e+kd+l+k+++k++ kR+ta  ll+hp++
  CCD26080.2 253 KLTNTT-ISYAI------------ENDNYIPPDSMSYEVKDFLSKCFQKNMYKRPTALVLLNHPWI 305
                 444433.22222............34688999*********************************7 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.026
                 TTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS...CTTB--EEEEEEE.....SSEEEEEEE--TTEB.....HHHHHHHHSS--HHHHHHHHHH CS
     Pkinase  21 ketgkivAvKkikkekakkkkekkvlrEikilkklk...hpnivrlyevfee.....kdelylvleyvegge.....ladllerkgslseeeakkiakq 106
                 k++ ++ A K   k+ +++    ++l+Ei+  ++++    +ni ++ +  +e     ++ + l l+y+++++     l+ +l++ ++++++++kk+ ++
  CCD26080.2 856 KKSTNMLAKKNSIKSIIQQLL--TILSEISSNENTNqnpKENIHKFHHPSQEisslnESFINLALNYLHNDDfivegLDLILQNFSIIQNDQLKKLSNH 952
                 445555666666666555544..6999999999998888889999999999888887788889999999999877777777777677999999998888 PP

                 HHHH CS
     Pkinase 107 ileg 110
                 + ++
  CCD26080.2 953 LTNA 956
                 7776 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.9   0.0   3.1e-56   1.1e-52       2     252 ..      60     296 ..      59     302 .. 0.93

  Alignments for each domain:
  == domain 1  score: 178.9 bits;  conditional E-value: 3.1e-56
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkekek 99 
                  +l+k +G+G++G V+++  k    k+++ Va+K ++ +++++  +e+++e++++k+l+h nivk++g++ k+++l+i++e+++ G+L++++ +   + 
   CCD26080.2  60 QLKKVIGQGSYGVVYKAINK----KTSQLVAIKEINYHNNDD-LNEIMSEIDLLKNLNHTNIVKYHGFIQKSSSLYIILEFCSLGSLKNMISSG--HG 150
                  6899**************99....8999*******7766666.9***********************************************997..77 PP

                  SBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHH CS
  Pkinase_Tyr 100 ltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwE 197
                  +   +   ++ q  +G++yL+++ ++Hrd+ a N Ll+ +++vk++DfG++ ++     ++++ +   +++Wm+pE+l ++  ++ sD+Ws G ++ E
   CCD26080.2 151 IPEFNAKTYIKQTLNGLNYLHNQGVIHRDIKAANLLLNAERIVKLADFGVSTRV-----TNTAMTLAGSLNWMSPEILGNRGASTLSDIWSLGSTVVE 243
                  77778888999*******************************************.....5566777889***************************** PP

                  HHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--H CS
  Pkinase_Tyr 198 iftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptf 252
                  ++t g+ p+++l+n+++  ++++++ +  p++++ e++++++kc+++++ +Rpt 
   CCD26080.2 244 LLT-GDPPFSKLTNTTISYAIENDNYI-PPDSMSYEVKDFLSKCFQKNMYKRPTA 296
                  ***.***********998888877766.5888*********************96 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1     0.077   2.8e+02       7      50 ..      49      95 ..      43     117 .. 0.76
   2 !   18.6   0.0   2.6e-07   0.00093     142     279 ..     153     284 ..     132     293 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.077
  Kinase-like  7 lgerer...tlvrgellkkgdrsvvfevkdqetgeplavkvfllpse 50
                 l++r+    ++  ++++++g  +vv+++ +++t + +a+k     ++
   CCD26080.2 49 LSQRKNksvQYQLKKVIGQGSYGVVYKAINKKTSQLVAIKEINYHNN 95
                 5555540114556899*******************999998766664 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 2.6e-07
  Kinase-like 142 etiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlv 239
                  e  a+ ++  q ++   +L+++g++h ++++ nlll+ +  ++l +f+   r+ + +        +  pE+lg+rg          +   d W lG +
   CCD26080.2 153 EFNAKTYI-KQTLNGLNYLHNQGVIHRDIKAANLLLNAERIVKLADFGVSTRVTNTAMTLAGSLNWMSPEILGNRGA---------STLSDIWSLGST 240
                  56677777.67888899********************************99999998865556788899*****888.........34469******* PP

  Kinase-like 240 iyriwclklPltlateeakeew....kfklckkipekvkaLlkk 279
                  +  +   + P+ + t+  ++      ++ +   ++ +vk  l k
   CCD26080.2 241 VVELLTGDPPFSKLTNTTISYAiendNYIPPDSMSYEVKDFLSK 284
                  *9999999999988876554323334555555555555555555 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.4   6.5e-05      0.23     312     388 ..     160     225 ..       3     237 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 6.5e-05
  Pkinase_fungal 312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkg 388
                     +++ ++g++ L+ ++g++HrDi + N+l++     +er   L+D+ + + + +      a +  G l++m+ e+l +
      CCD26080.2 160 IKQTLNGLNYLH-NQGVIHRDIKAANLLLN-----AERIVKLADFGVSTRVTN-----TAMTLAGSLNWMSPEILGN 225
                     566788999***.*****************.....788999999999999985.....4456889999999888875 PP

>> MRP-63  Mitochondrial ribosome protein 63
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4         4   1.4e+04      48      68 ..      13      25 ..       7      38 .. 0.43
   2 ?   11.8   0.7   8.2e-05       0.3      33      81 ..     296     352 ..     279     357 .. 0.74

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 4
      MRP-63 48 sghakerrkkekklkkikekk 68
                ++ ++         ++++ ++
  CCD26080.2 13 QQQQQ--------QQQLQRRQ 25
                22222........22222222 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 8.2e-05
      MRP-63  33 neyyLsrPYLtkeqesghakerrkkekk.........lkkikekkkrakfpkhvtiae 81 
                 +  +L++P++t+e+e++ ++++++k+k+         +k  + +kk +kf++  ++ +
  CCD26080.2 296 ALVLLNHPWITNENENKNKNKSENKNKNknehtappvIKS-NLNKKLSKFKETNFATD 352
                 5679************999999988876677777774444.44444478888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2054  (0.114563); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.85u 0.29s 00:00:01.13 Elapsed: 00:00:00.47
# Mc/sec: 7180.62
//
Query:       CCD26081.2  [L=375]
Description: hypothetical protein NDAI_0G03040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.2e-152  505.4   0.0   2.7e-151  503.8   0.0    1.6  1  Actin     Actin


Domain annotation for each model (and alignments):
>> Actin  Actin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.8   0.0  1.5e-155  2.7e-151       3     407 .]       4     375 .]       2     375 .] 0.98

  Alignments for each domain:
  == domain 1  score: 503.8 bits;  conditional E-value: 1.5e-155
       Actin   3 evsavVlDnGssttraGyagedaPkavipslvgkprgrkvea.....klyvgdealtkrpelevrspvedGvvedwdaveelwehvlkeelkvdpeehp 96 
                 ev a+V+DnGs++++aG+ag+daP+av+ps+vg+pr++  +      + yvgdea++kr+ l++r+p+e+G+v++wd++e++w+h++++el+v peehp
  CCD26081.2   4 EVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGIMVgmgqkDSYVGDEAQSKRGILTLRYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 102
                 899***********************************999899*999*************************************************** PP

       Actin  97 llltepplnppkqrekalEivfEkfkvpalylaksavlsafasgkstglvvDsGasvtsvvpVldGyvLkkairrsdlgGkaLteqlkellssknvevt 195
                 +llte+p+np+++rek+++i+fE+f+vpa+y++ +avls+++sg++tg+v+DsG++vt+vvp++ G++L +ai r dl+G++Lt++l+++ls++     
  CCD26081.2 103 VLLTEAPMNPKSNREKMTQIMFETFNVPAFYVSIQAVLSLYSSGRTTGIVLDSGDGVTHVVPIYAGFSLPHAILRIDLAGRDLTDYLMKILSER----- 196
                 *********************************************************************************************8..... PP

       Actin 196 prylikkkkvveaessaekeelekltesyktleeeevleeiKesvcevsedpeg..deeksssspeksYeLPDgseiklgeeRfkvpEiLFdpsligse 292
                                          ++s++t++e+e++++iKe++c+v+ d+e+  +++++sss+eksYeLPDg++i++g+eRf++pE+LF+ps +g e
  CCD26081.2 197 -------------------------GYSFSTTAEREIVRDIKEKLCYVALDFEQemQTASQSSSIEKSYELPDGQVITIGNERFRAPEALFHPSVLGLE 270
                 .........................9***************************977777777************************************* PP

       Actin 293 saleeekskllgiselivaainacdvdlrpeLlanivvtGGnsllpglteRlekelaqlaskgvkvkiiapeeerkysaWiGGSiLAslgtfqqlwvsk 391
                 s+         gi + ++++i++cdvd+r+eL+ niv++GG++++pg+ eR++ke+++la++++kvkiiap+ erkys+WiGGSiLAsl tfqq+w+sk
  CCD26081.2 271 SS---------GIDQTTYNSIMKCDVDVRKELYGNIVMSGGSTMFPGIAERMQKEITALAPSSMKVKIIAPP-ERKYSVWIGGSILASLTTFQQMWISK 359
                 99.........*************************************************************.************************** PP

       Actin 392 qEYeEqGssvverkck 407
                 qEY+E+G+s+v+ kc+
  CCD26081.2 360 QEYDESGPSIVHHKCF 375
                 ***************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       415  (0.0231469); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2859.20
//
Query:       CCD26082.2  [L=210]
Description: hypothetical protein NDAI_0G03050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.6e-65  217.7   0.4    7.9e-65  217.4   0.4    1.1  1  Ras          Ras family
    7.3e-36  123.0   0.2    1.3e-35  122.2   0.2    1.4  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    3.6e-17   62.4   0.2    4.7e-17   62.0   0.2    1.1  1  Arf          ADP-ribosylation factor family
    1.2e-05   24.7   0.3    1.7e-05   24.3   0.2    1.4  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    1.3e-05   24.8   0.2    3.3e-05   23.5   0.2    1.7  1  GTP_EFTU     Elongation factor Tu GTP binding domain
    0.00025   21.1   0.1    0.00051   20.1   0.1    1.5  1  MMR_HSR1     50S ribosome-binding GTPase
     0.0024   17.3   0.1     0.0041   16.6   0.1    1.4  1  SRPRB        Signal recognition particle receptor beta subuni
     0.0042   17.0   0.7       0.11   12.4   0.1    2.3  2  RsgA_GTPase  RsgA GTPase
  ------ inclusion threshold ------
      0.043   13.1   0.2       0.13   11.6   0.0    1.7  2  Septin       Septin
      0.051   13.6   0.1       0.14   12.2   0.0    1.9  2  AAA_5        AAA domain (dynein-related subfamily)
      0.051   14.1   2.1       0.55   10.7   2.1    2.1  1  ABC_tran     ABC transporter
      0.083   12.6   0.0       0.23   11.3   0.0    1.7  1  AAA_29       P-loop containing region of AAA domain
      0.088   13.2   0.0       0.15   12.5   0.0    1.7  1  AAA_16       AAA ATPase domain
       0.13   12.7   0.1        1.3    9.4   0.0    2.3  2  AAA          ATPase family associated with various cellular a
       0.13   12.5   0.1       0.32   11.2   0.0    1.8  2  AAA_22       AAA domain
       0.13   11.7   0.6       0.26   10.8   0.0    1.7  2  AAA_7        P-loop containing dynein motor region


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   0.4     7e-68   7.9e-65       1     161 [.      10     170 ..      10     171 .. 0.99

  Alignments for each domain:
  == domain 1  score: 217.4 bits;  conditional E-value: 7e-68
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 Kl+l+G+s+vGK++lllrf +d+++++y+sTigvdf++k++e+dgk+vkl+iwDTAGqe+f++++++yyr+++gi++vyd+t+++sf+ vk w++ei r
  CCD26082.2  10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQDSFDGVKMWLQEIDR 108
                 89************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +a+++v  +LvGnK+Dle+kr+v+++ ++e+a++++++fletSA +++nveeaf +++r+i+
  CCD26082.2 109 YATSTVLKLLVGNKCDLEDKRVVEYDVAKEFADSNKMPFLETSALNSTNVEEAFLTMARQIK 170
                 ***********************************************************996 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.2   0.2   1.2e-38   1.3e-35       1     120 []      10     125 ..      10     125 .. 0.91

  Alignments for each domain:
  == domain 1  score: 122.2 bits;  conditional E-value: 1.2e-38
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K++l+G+sgvGK++ll rf +d++++++ stigvdf+ k+v +++g       k+vkl+iWDtaGqerfr+++++y+r+++ +i+vyd   ++s++ +k
  CCD26082.2  10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTV-ELDG-------KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDvtdQDSFDGVK 100
                 89**********************************99886.4544.......6899******************************96545567899* PP

                 HHHHHHHHHCSSS-E.EEEEE-TTT CS
         Roc  97 eWlkelkkvagkspv.ilvgnkiDl 120
                  Wl+e++++a+++++ +lvgnk+Dl
  CCD26082.2 101 MWLQEIDRYATSTVLkLLVGNKCDL 125
                 **********99876499*****95 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.2   4.2e-20   4.7e-17      15     171 ..       9     165 ..       2     174 .. 0.82

  Alignments for each domain:
  == domain 1  score: 62.0 bits;  conditional E-value: 4.2e-20
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHHHHHC CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeLkall 108
                 +++ll+G  + GK+ +l +++++  ++  + Tig  f+++++e   k++k+++wD  Gqe+ R + ++Y++  +++i v D++d++ ++  k  L+++ 
  CCD26082.2   9 FKLLLIGNSGVGKSCLLLRFSDDTYTNdYISTIGvdFKIKTVELdgKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQDSFDGVKMWLQEI- 106
                 799*******************99887678888755789999887799************************************************97. PP

                 TSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHH CS
         Arf 109 eeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewl 171
                 ++   ++v  l+++NK Dl++      + e    +e   ++k+   ++sa++ ++++e++  +
  CCD26082.2 107 DRYATSTVLKLLVGNKCDLEDKR----VVEYDVAKEFADSNKMPFLETSALNSTNVEEAFLTM 165
                 5667788999999*****98643....333333344444667777777777777777776655 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   1.5e-08   1.7e-05       1     124 [.      10     126 ..      10     164 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 1.5e-08
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflg.nltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k+LL+G+sg GK+++     d +  +d ++ ++ +d + ++v++ g  ++l++wD  Gqe+f + +     ++ +r    +i V Dv++   +++++  
  CCD26082.2  10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYIS-TIGVDFKIKTVELDGkTVKLQIWDTAGQERFRTIT-----SSYYRGSHGIIIVYDVTD---QDSFDGV 99 
                 89**************99999988888765.345555666666655168************98875.....556677777888888884...4556666 PP

   Gtr1_RagA  99 keilealrqyspeakvfvli.hKmDli 124
                 k  l+++ +y     ++ l+ +K+Dl 
  CCD26082.2 100 KMWLQEIDRYATSTVLKLLVgNKCDLE 126
                 666777777777666666665566665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.2   2.9e-08   3.3e-05      56     189 ..      45     166 ..       9     172 .. 0.83

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.9e-08
                 SSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETT.....TBSTHHHHHHHHHHHHTTTEEEEEEESCGSTHHHHHHHHHHHHHH CS
    GTP_EFTU  56 iksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdav.....eGvepqteevlrlalkegvpiivfiNKmDrlkaelkeiveevkqk 149
                  k+++++l+  +k+ ++++ Dt G + F   ++  +r  +g ++v d++     +Gv++  +e+ r a +  +++ ++ NK+D  ++++ e   +v ++
  CCD26082.2  45 FKIKTVELD--GKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTdqdsfDGVKMWLQEIDRYATSTVLKL-LVGNKCDLEDKRVVE--YDVAKE 138
                 567778888..**************************************77777789999999999998777665.567****98887654..456666 PP

                 HHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHH CS
    GTP_EFTU 150 lsrkeeklekygekgekevpvvfgSalkgegvktllealv 189
                 +           +++ +++p++ +Sal+  +v++ + ++ 
  CCD26082.2 139 F-----------ADS-NKMPFLETSALNSTNVEEAFLTMA 166
                 7...........344.4799********999998444444 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   4.6e-07   0.00051       2      99 ..      11     105 ..      10     122 .. 0.63

  Alignments for each domain:
  == domain 1  score: 20.1 bits;  conditional E-value: 4.6e-07
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldeel 97 
                  +++G++ vGKS L+ + ++++     +     d + ++v+l+g   +++++Dt+G  e   + + ++ ++ +   ++ i++v d++ +++++ ++  l
  CCD26082.2  11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGktVKLQIWDTAG-QE---RFRTITSSYYR--GSHGIIIVYDVTdQDSFDGVKMWL 103
                 579****************985544444444444455555544433779*******.44...23355565553..478999999977533444443333 PP

                 HH CS
    MMR_HSR1  98 ee 99 
                 +e
  CCD26082.2 104 QE 105
                 33 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.6e-06    0.0041       6      86 ..      11      91 ..       7     123 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3.6e-06
                EEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETT CS
       SRPRB  6 vllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDSt 86
                +ll+G s  GK  l+ r + d++++ ++S     +  k+   + k  kl++ D  G+e++r+  + +    +  +g++ v D t
  CCD26082.2 11 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTiGVDFKIKTveLDGKTVKLQIWDTAGQERFRTITSSY---YRGSHGIIIVYDVT 91
                79***************************97667777663345566778899*********866555...55566777776655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   9.7e-05      0.11     103     122 ..      12      31 ..       8      83 .. 0.83
   2 ?    3.2   0.1     0.065        73      44      92 ..     111     160 ..      82     174 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 9.7e-05
                  EEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpe 122
                  +l+G+SGvGKS L+ ++  +
   CCD26082.2  12 LLIGNSGVGKSCLLLRFSDD 31 
                  79***********9776654 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.065
                  HTT-EEEEEEE-GGG--HHH.HHHHHHHHHHHTTSEEEE--TTTHTTHHH CS
  RsgA_GTPase  44 ekgiepvivlnKiDlleeee.eleelkeelealgyevllvsaktkeglee 92 
                  ++ +  ++v nK+Dl +++  e++  ke   +  +++l +sa +++++ee
   CCD26082.2 111 TSTVLKLLVGNKCDLEDKRVvEYDVAKEFADSNKMPFLETSALNSTNVEE 160
                  4455567788*****99998778888888888889999999998888876 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00011      0.13       5      71 ..       9      66 ..       6      77 .. 0.68
   2 ?   -1.6   0.0       1.1   1.3e+03      76     101 ..     156     181 ..     148     193 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00011
                EEEEEEEBTTSSCCCCCCTTSSSS------------------S-EEEEEEEEETTCEEEEEEEE--- CS
      Septin  5 ftlmvvGesglGkttlintlfetdlieeekleeasekkkktveikkkkvvieedgvklnltviDtpg 71
                f l+++G+sg+Gk+ l+  +  ++ +++         ++  v++k k+v+++++   ++l++ Dt g
  CCD26082.2  9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDY-------ISTIGVDFKIKTVELDGKT--VKLQIWDTAG 66
                89**************9776555444443.......2234556666666665554..4455667665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
                 SSHHCCCHHHHHHHHHHHHHHHHHCT CS
      Septin  76 vdnskswepiveyideqfeeylrees 101
                  + ++++ +++++i+e +++   e+s
  CCD26082.2 156 TNVEEAFLTMARQIKESMNQQKMEDS 181
                 56677888888888888776655554 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00012      0.14       2      23 ..      11      32 ..      10     118 .. 0.87
   2 ?   -1.5   0.0       2.1   2.3e+03      33      59 ..     155     183 ..     135     192 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00012
                EEEE--SSSSHHHHHHHGGGGB CS
       AAA_5  2 vlLvGppGtgKselaerlaaal 23
                +lL+G++G+gKs l  r++  +
  CCD26082.2 11 LLLIGNSGVGKSCLLLRFSDDT 32
                89*************9999766 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.1
                 -TT--HHHHH--B--...........--- CS
       AAA_5  33 trdtteedlkgrreik..ngttslvdspl 59 
                 + + +e+ l++ r+ik  + +++++ds +
  CCD26082.2 155 STNVEEAFLTMARQIKesMNQQKMEDSNA 183
                 45566666666777666666666666655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.1   0.00049      0.55      14      63 ..      11      59 ..       7     204 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00049
                EEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigv 63
                + ++G++G GKS Ll  ++  +  t++ i   g d+k ++ e   k ++ 
  CCD26082.2 11 LLLIGNSGVGKSCLLLRFSDDTY-TNDYISTIGVDFKIKTVELDGKTVKL 59
                679************99998875.78888666666666555555554444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.23      25      39 ..      11      25 ..       4      26 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
      AAA_29 25 tlltGpsGsGKSTll 39
                 ll+G+sG+GKS ll
  CCD26082.2 11 LLLIGNSGVGKSCLL 25
                69**********997 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00013      0.15      27      51 ..      11      35 ..      10     183 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00013
      AAA_16 27 vllsGesGvGKsslvrellralekd 51
                +ll+G+sGvGKs l+ ++ +   ++
  CCD26082.2 11 LLLIGNSGVGKSCLLLRFSDDTYTN 35
                79*************8887633333 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0    0.0012       1.3       1      64 [.      11      87 ..      11     134 .. 0.71
   2 ?    0.7   0.1      0.58   6.5e+02      15      52 ..     136     175 ..     130     184 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0012
                EEEESSTTSSHHHHHHHHHHHH.............THEEEEEETTTCS.SSSTTHHHHHHHHHHHHHHHTSTSEEEEE CS
         AAA  1 vllyGppGtGKTllakavakel.............gvefleisgsell.skyvgesekkirelfkeakekakpsilfi 64
                +ll+G+ G+GK+ l      ++             +++ +e++g+++  + +  ++++++r + ++  + + + i+++
  CCD26082.2 11 LLLIGNSGVGKSCLLLRFSDDTytndyistigvdfKIKTVELDGKTVKlQIWDTAGQERFRTITSSYYRGS-HGIIIV 87
                69**************9999964444444444444577888888888866677888888888888877776.655544 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.58
                 HHHHHHHHTHEEEEEETTTCS..SSSTTHHHHHHHHHHHH CS
         AAA  15 akavakelgvefleisgsell..skyvgesekkirelfke 52 
                 ak  a + +++fle+s+ + +  ++ +  ++++i+e +++
  CCD26082.2 136 AKEFADSNKMPFLETSALNSTnvEEAFLTMARQIKESMNQ 175
                 6777777789999999988873344777777777776665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00029      0.32       8      28 ..      11      31 ..      10     119 .. 0.83
   2 ?   -0.8   0.0       1.5   1.7e+03      40      51 ..     128     139 ..      95     186 .. 0.55

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00029
      AAA_22  8 lvvtGesGtGKTtllrrlleq 28
                l+++G sG+GK+ ll r+ + 
  CCD26082.2 11 LLLIGNSGVGKSCLLLRFSDD 31
                689***********9999775 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.5
      AAA_22  40 pevvfvtlpsst 51 
                 ++vv+++++++ 
  CCD26082.2 128 KRVVEYDVAKEF 139
                 444444444443 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00023      0.26      35      72 ..      10      48 ..       4      56 .. 0.76
   2 ?   -2.7   0.3       3.2   3.6e+03      56      83 ..     152     179 ..     147     185 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00023
       AAA_7 35 pvllvGptGtGKtviikdllkkldkekyl.sltinfsaq 72
                ++ll+G++G+GK++++ ++ +   +++y+ ++ + f+ +
  CCD26082.2 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYIsTIGVDFKIK 48
                689**************9777666555540555666655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.2
       AAA_7  56 kldkekylsltinfsaqtsanqlqdiie 83 
                 +l+++++  +++++  q + ++ q+ +e
  CCD26082.2 152 ALNSTNVEEAFLTMARQIKESMNQQKME 179
                 5666667777777777777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1028  (0.0573373); expected 358.6 (0.02)
Passed bias filter:                      601  (0.0335211); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 1535.94
//
Query:       CCD26083.2  [L=1354]
Description: hypothetical protein NDAI_0G03060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.6e-180  597.8   0.1   2.1e-179  596.7   0.1    1.6  1  RNA_pol   DNA-dependent RNA polymerase
   9.7e-100  334.2   0.9   9.7e-100  334.2   0.9    1.8  2  RPOL_N    DNA-directed RNA polymerase N-terminal


Domain annotation for each model (and alignments):
>> RNA_pol  DNA-dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  596.7   0.1  2.4e-183  2.1e-179       1     414 []     861    1354 .]     861    1354 .] 0.99

  Alignments for each domain:
  == domain 1  score: 596.7 bits;  conditional E-value: 2.4e-183
                  EE-HHHHHHHHHHHHHHHTT-TSSTHHHHHHHHHHTHHHHHHHHHTTT...TGGGGSSSHHHHHHHHHHHHHHHH..HGTTSEE-S-EEEEBSTHHH CS
     RNA_pol    1 kpLgeeglrwLkihlanlfGldkaslkervefveenleeildsaenplegkrwwlkaedpwqaLaacfelkkalesedpeeyvshlpvhqDGscnGL 97  
                  k+Lg++gl+wLkih+anl+G+dk+ ++er++f+e+++e++ d+aenpl+gk ww+ka++pwq+La+c+el++al++++pe+++sh pvhqDG+cnGL
  CCD26083.2  861 KKLGPDGLSWLKIHCANLYGMDKIPFTERIQFIEDHIEDVKDTAENPLDGKGWWKKADKPWQLLATCIELNEALKLDNPEDFISHQPVHQDGTCNGL 957 
                  79*********************************************************************************************** PP

                  HHHHHHTT-HHHHHHTTSSSSSS---HHHHHHHHHHHHHHHHE.ESTHHHHHHHT.--HHHHHHHHHHGGGT-THHHHHHHHHHHTHHH.....TTH CS
     RNA_pol   98 QHYaaLgrDeegakqVNLvpsdrpqDvYsavaelvkekvekdaekgeelakllkgkikRkvvKqtvmtnvYgvtfvgareqiekqlkeleeveeeel 194 
                  QHYaaLg+D ega+qVNL+p++rpqDvY +va+lvk+++ek + +g++ a+ll +ki+RkvvKq+vmtnvYgvt+vga+ qiekql+e    +++++
  CCD26083.2  958 QHYAALGGDVEGATQVNLIPNERPQDVYRHVANLVKKRLEKAVLAGDKKAELLVDKITRKVVKQPVMTNVYGVTYVGATFQIEKQLSEY-FPDRKQC 1053
                  *******************************************99*******************************************9.344799* PP

                  HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHS-EB-T............-.S--EEEEETTSEEEEE--EEESEEEEESSSTTE--EEEEE CS
     RNA_pol  195 lkaasylaklilksleelfkgakeiqkwLkelakliakslkae............klkstvvWttplglpvvqpYrkkkkkqvktalqsvvlsksek 279 
                  +++++yl+ +++++++elf++a+ iq+wL+e+ak+i+ks++ +            +++s+v+Wttplglp+vqpYr+++kkqv t+lq++++s++  
  CCD26083.2 1054 FDLSKYLTFHVFATIRELFHSAHLIQDWLGECAKRITKSIRLDvdgksfkngnkpDFMSSVIWTTPLGLPIVQPYREATKKQVMTNLQTIFISDPFA 1150
                  *****************************************9999**999988654***************************************** PP

                  SCEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--EEESSSEEEE-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSTGGGSS...... CS
     RNA_pol  280 kdpvnkrkqkqafpPNfiHslDathmlltaleckeegltfaavHDsfwthaadvdelnkilreafvklhsedilerlaeefkerykkslllakvkkk 376 
                   + vn+r+qk +fpPNfiHslDa+hmll+a++cke+gl+fa+vHDs+wtha+dv++++  lr++f++lh+ d++erl++ef+eryk++++++k+ k+
  CCD26083.2 1151 INGVNARRQKAGFPPNFIHSLDASHMLLSAIKCKENGLEFASVHDSYWTHACDVNKMSVYLRDEFIELHKVDLIERLKDEFDERYKDYVQIVKIGKT 1247
                  ************************************************************************************************* PP

                  ...................................................................................SS-------S-SGG CS
     RNA_pol  377 sevakkika.....................................................................vlvplelpevPkkGeldve 404 
                  +e+a+ki +                                                                     v+vpl+lpe+P+kG++dv+
  CCD26083.2 1248 TELANKILKwrkeqseklgrpltladeihmekkrqdmlnsesatvrakgsklvtsislvedvkeidelkpvtesmsvlVIVPLKLPEIPSKGDFDVQ 1344
                  *******99**************************************************************************************** PP

                  GGGG-TTTB. CS
     RNA_pol  405 evkeskYffs 414 
                  +v+eskYffs
  CCD26083.2 1345 NVRESKYFFS 1354
                  *********7 PP

>> RPOL_N  DNA-directed RNA polymerase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.2   0.9  1.1e-103  9.7e-100       1     336 []     429     737 ..     429     737 .. 0.93
   2 ?   -2.2   0.1      0.23     2e+03     296     327 ..    1285    1318 ..    1225    1325 .. 0.57

  Alignments for each domain:
  == domain 1  score: 334.2 bits;  conditional E-value: 1.1e-103
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGTHHHHHHHHHHHHHHHHHHHTSSSS--HHHH....................HTTTS-HHHHHHHHHHHH CS
      RPOL_N   1 rQlrlEedsveaaverwreeaeelkkrglatslsskslnallweWyealeeaikeelekveksekkekkteedkdraeygpfLrllppeklAaitilel 99 
                 rQ+ lE ++ +aa+erw++++ee+k+rg+  s+ +ksln  lw+Wye +++ +k+e+ek++    k +k+ +  + +++ p+L l++pek+++itilel
  CCD26083.2 429 RQRALESRAADAAKERWKHDFEEAKERGD-LSI-RKSLNVKLWNWYELMLPILKKEIEKAQ---LKLEKQSKIFKSQDFDPYLLLVNPEKMCVITILEL 522
                 8***************************9.999.59************************9...4445566689************************* PP

                 HHHHTSSS....-BHHHHHHHHHHHHHHHHHHHHHHHHHTTT.TTCHHHHHHHHSTSHHHHHHHHHHHHHHHSHSSSTTT-TT............SSSC CS
      RPOL_N 100 lsllstggvdkgvkvarlaisvGkaveeeyraeqlkkkekkkkkkkkkkekkvkklkkkkkeakealakekeeekeelkrekaeklaeeeeekeeeeWp 198
                 l+l+stggv +g+++ar++isvGka+e+e+r+eql+k+e++ +k+ +kk+ + kk+ +++k++ ++                       + ek++  Wp
  CCD26083.2 523 LKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQLLKNESSIFKDINKKSAEFKKIVQRAKSNFRST----------------------QLEKSKIFWP 599
                 ********99***************************998888888888777777777666555532......................22334689** PP

                 HHHHHHHHHHHHHHHHHHSTSEEEEE.....................ESTT-EEEEEE-HHHHHHHHHHHHHTTS-TSS--BSS--B--SSSBSEBSSS CS
      RPOL_N 199 qeirakvGavLislLletakvpvtaedpetgekvteeqPAFyhsyqykkgkkvgviklnpelvkllkreplrdtltprhlPMlvpPkpWtsynkGGYll 297
                 q++ra++G++Lis+L+++ak++v++ dp t++kv+ e+PAF hsyqy +g k+gvik++++l+++l+ e+l ++++p++lPMlv+P++W+++++GGY++
  CCD26083.2 600 QAVRAQIGSILISTLIHVAKIDVEGFDPITKTKVYGEAPAFAHSYQYCNGMKLGVIKIHKALINQLNGERLVASVQPQLLPMLVEPREWKNWRSGGYFY 698
                 *************************************************************************************************** PP

                 SSSBSEE-SS........HHHHHTB--HHHHHHHHHHHT CS
      RPOL_N 298 sptklmRtkdskeqkeylkaasergdldqvfkgLdvLGk 336
                 ++++l+R k+s+eq +ylka+s+++ +d+v++gL++LGk
  CCD26083.2 699 TQSTLIRSKESPEQLAYLKAVSDKEAIDDVYNGLNALGK 737
                 **************************************7 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.23
                  SSSSSBSEE-SS..........HHHHHTB--HHH CS
      RPOL_N  296 llsptklmRtkdsk..eqkeylkaasergdldqv 327 
                  l s++  +R+k+sk     ++++ ++e ++l++v
  CCD26083.2 1285 LNSESATVRAKGSKlvTSISLVEDVKEIDELKPV 1318
                  3344455555555554444555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1431  (0.0798148); expected 358.6 (0.02)
Passed bias filter:                      512  (0.0285571); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.89u 0.32s 00:00:01.21 Elapsed: 00:00:00.47
# Mc/sec: 8660.04
//
Query:       CCD26084.2  [L=297]
Description: hypothetical protein NDAI_0G03070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-64  216.3   2.5    3.7e-64  215.8   2.5    1.2  1  Mob1_phocein     Mob1/phocein family
  ------ inclusion threshold ------
      0.082   13.7   0.2         14    6.5   0.1    2.4  2  Methyltransf_12  Methyltransferase domain


Domain annotation for each model (and alignments):
>> Mob1_phocein  Mob1/phocein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.8   2.5   4.1e-68   3.7e-64       3     169 .]     114     281 ..     112     281 .. 0.98

  Alignments for each domain:
  == domain 1  score: 215.8 bits;  conditional E-value: 4.1e-68
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xx RF
  Mob1_phocein   3 tlgsgdlkeavklPkgedlneWlavhvvdffneinllygtisefcteqscptmsagpkyeYlwadeevkkpvklsApeYidllmdwiesqlnd..lf 97 
                   +l +g++k++v+lPk++d  eW+a +v++ff+++n++yg+i+e++t++  ptm+a p+++Ylw d + +++v+l+A +Yidl ++wi++++nd  lf
    CCD26084.2 114 ALVKGSFKTIVQLPKYVDIGEWIALNVFEFFTNLNQFYGVIAEYVTPDAYPTMNADPHTDYLWLDAN-NRQVSLPASQYIDLALTWINNKVNDknLF 209
                   68999************************************************************87.9**************************** PP

                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Mob1_phocein  98 pskagspfpknflkvvkkilkrlfrvyaHiYihHfeeiaeleleahlntcfkhfvlfvkeFkLidkkelepl 169
                   p++++++fp+ fl++v++i+ ++fr++aHiY+hHf++i++l+leah+n++f+hf+ f keFk+id+ke++pl
    CCD26084.2 210 PTRNDATFPQVFLRDVQRIMVQMFRIFAHIYHHHFDKIVHLSLEAHWNSFFAHFISFSKEFKIIDRKEMAPL 281
                   *********************************************************************997 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0045        41      46      97 ..      83     162 ..      55     164 .. 0.74
   2 ?    6.5   0.1    0.0016        14      19      91 ..     170     241 ..     162     244 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0045
  Methyltransf_12  46 nnnnnvelealdlldldgg..........................ssfDl..vvasnvlhhlkdirevldnirklLkpgG 97 
                       n+++++l+  ++++ + +                          +++D+   +a+nv++ + +++++   i++ ++p++
       CCD26084.2  83 ANASQNTLTSHQSDKPETQqvmflsepfvrtalvkgsfktivqlpKYVDIgeWIALNVFEFFTNLNQFYGVIAEYVTPDA 162
                      44444444444433332226666666677777777777788888889999999*********************999986 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0016
  Methyltransf_12  19 pdieytgvDispsaiedakeklakrennnnnnvelealdlldldgg...ssfDlvvasnvlhhlkdirevldnirk 91 
                      p+++y+++D + +++   +   ++++++  ++++++++d  +l++    ++f  v++ +v   + ++ +++++i++
       CCD26084.2 170 PHTDYLWLDANNRQV---SLPASQYIDLALTWINNKVND-KNLFPTrndATFPQVFLRDVQRIMVQMFRIFAHIYH 241
                      7899***********...899999999999999999998.56666679999****999999999999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1339  (0.0746835); expected 358.6 (0.02)
Passed bias filter:                      544  (0.0303419); expected 358.6 (0.02)
Passed Vit filter:                        68  (0.00379274); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2074.60
//
Query:       CCD26085.2  [L=138]
Description: hypothetical protein NDAI_0G03080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.5e-38  128.9   0.5    1.4e-37  128.3   0.5    1.2  1  Ribosomal_L22e  Ribosomal L22e protein family
  ------ inclusion threshold ------
      0.023   13.9   0.0      0.029   13.5   0.0    1.1  1  DUF4799         Domain of unknown function (DUF4799)
      0.097   12.7   1.5        3.1    7.9   0.1    2.4  2  YqzE            YqzE-like protein


Domain annotation for each model (and alignments):
>> Ribosomal_L22e  Ribosomal L22e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.3   0.5   2.4e-41   1.4e-37       2     108 ..      26     131 ..      25     134 .. 0.95

  Alignments for each domain:
  == domain 1  score: 128.3 bits;  conditional E-value: 2.4e-41
  Ribosomal_L22e   2 kklkftidcskpvedkildvaefekfLkerikvngktgnlgdkveieregkskvtvtsevkfskrylkyltkkyLkkkqlrdwlrvvasskesYe 96 
                     + +++t+d+s+p+e++++d+a+++kfL ++ikv+g  gnlg+++++e++  s vt++s++kfs++ylkyltkkyLkk+qlrdw+r+++ +k++Y+
      CCD26085.2  26 TIKTLTVDVSSPTENGVFDPASYAKFLIDHIKVDGTIGNLGNAITVEED-GSIVTIVSTTKFSGKYLKYLTKKYLKKNQLRDWIRFISIKKNNYK 119
                     67899********************************************.579****************************************** PP

  Ribosomal_L22e  97 Lryfnieedeee 108
                     L++++++ +e+ 
      CCD26085.2 120 LSFYQVTPEEDA 131
                     ******988764 PP

>> DUF4799  Domain of unknown function (DUF4799)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   4.8e-06     0.029     208     238 ..      18      48 ..       7      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 4.8e-06
     DUF4799 208 qrhrqeqrlistkrvkihsPtyrPafdPasd 238
                 +  r++q+ i+t  v + sPt +  fdPas 
  CCD26085.2  18 KTSRRQQKTIKTLTVDVSSPTENGVFDPASY 48 
                 567899***********************95 PP

>> YqzE  YqzE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1   0.00052       3.1       6      29 ..       6      29 ..       2      43 .. 0.83
   2 ?    3.7   0.2     0.011        63       5      15 ..      90     100 ..      87     104 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00052
        YqzE  6 vKyvTqqfVkymdtPkeeRkkkke 29
                +K +T++ + y+ t++ + k+ k+
  CCD26085.2  6 LKLLTKERIYYIKTSRRQQKTIKT 29
                799************999998776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.011
        YqzE   5 YvKyvTqqfVk 15 
                 Y+Ky+T++  k
  CCD26085.2  90 YLKYLTKKYLK 100
                 9*****98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       718  (0.0400469); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1033.51
//
Query:       CCD26086.2  [L=1009]
Description: hypothetical protein NDAI_0G03090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.1e-139  464.2   0.8   3.2e-139  463.6   0.8    1.3  1  DUF726    Protein of unknown function (DUF726)


Domain annotation for each model (and alignments):
>> DUF726  Protein of unknown function (DUF726)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.6   0.8  1.8e-143  3.2e-139       1     342 [.     579     917 ..     578     918 .. 0.99

  Alignments for each domain:
  == domain 1  score: 463.6 bits;  conditional E-value: 1.8e-143
      DUF726   1 rkikrylliglAglaGgaligltggLaaPlvaagigallaglGltgsaafLasvggsavitallgaagAklsvkkmkkrvkeikdFefiplseqirlks 99 
                 +++k+++++glA+++G++++gl+ggL+aP+++agi+a l+++G++g+++fL++vgg++v++ +++a+gA++++++m+kr++++++Fef+pl++++r+ +
  CCD26086.2 579 KRRKKMAYVGLAMVGGSLVLGLSGGLLAPVIGAGIAAGLSTIGIGGATGFLTGVGGTTVVALSSTAIGANIGARGMSKRMGSVRTFEFRPLHNNRRV-N 676
                 689999*****************************************************************************************98.* PP

      DUF726 100 ltvtvsislelsdeddvtapwralakaekdlYalkwEvelLkelGkaletilasealsvakqeilkrtvlaslvaaltWPlaLlkvakildnpwnvsle 198
                 l+++vs+++ +++eddv+ p++++++ e+dlY+l+wE+e+Lk+ G+++ +i+ase++++++q++l++t+l++l++a++WP+aL+k+++ildnpwnvsl+
  CCD26086.2 677 LILSVSGWI-IGNEDDVRLPFSTVDPLEGDLYSLYWEPEMLKSTGQTI-NIVASEVFTQTIQQVLGATILTGLMSAIQWPMALSKLGYILDNPWNVSLD 773
                 *********.**************************************.************************************************** PP

      DUF726 199 raakaGklLAdallsraqGeRpvtLiGfslGARviyvCLlelakkkalglvenvillGaPvtteakvwlkvrsvvsgRlvnvysenDylLgflyRtssa 297
                 ra++aG +LAd+l+sr+ GeRp+tL+GfslGARvi++CL+el+k+ka glvenv+++G+P++ ++++++++rs+vsgR+vn+ys++D++L++l+R++  
  CCD26086.2 774 RAWAAGLILADTLMSRNLGERPITLVGFSLGARVIFSCLIELSKRKASGLVENVFIFGTPIVRKREHLVMARSIVSGRFVNGYSDKDWVLAYLFRATGG 872
                 *************************************************************************************************** PP

      DUF726 298 qf.rvaglqrieldvekvenvdvselvegHldYrkklkkilkaigl 342
                 +f +v+g+++ie d++++en++++e+v+gH++Yrk+++k+l+++g+
  CCD26086.2 873 GFkAVMGISPIE-DINEIENFNCTEFVDGHMAYRKNMPKLLREMGI 917
                 **99********.8****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1009 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2405  (0.13414); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.50
# Mc/sec: 6115.15
//
Query:       CCD26087.2  [L=595]
Description: hypothetical protein NDAI_0G03100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-41  141.5   0.0    4.4e-41  140.7   0.0    1.4  1  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 
    2.5e-29  101.3   1.7    9.4e-29   99.5   0.3    2.3  2  PhetRS_B1        Phe-tRNA synthetase beta subunit B1 domain
    2.2e-25   89.4   0.0    3.7e-25   88.6   0.0    1.4  1  B3_4             B3/4 domain
    4.5e-16   58.9   0.0    2.9e-14   53.1   0.0    2.7  3  B5               tRNA synthetase B5 domain


Domain annotation for each model (and alignments):
>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.7   0.0   9.8e-45   4.4e-41      17     213 ..     385     590 ..     372     591 .. 0.94

  Alignments for each domain:
  == domain 1  score: 140.7 bits;  conditional E-value: 9.8e-45
  tRNA_synthFbeta  17 keqklrrklrdllagaGlnEvitysfvsekeldkll.eddderkavelanPlsedqsvlRtsLlpglLevlarNlargnedvrlFEigkvflkd 109
                      + +k+++  r + ++a ++Ev+  +++s++e+ k+l  +dd+ k+v+lanP + +++v+Rt+Llpg+L+++++N++++++ +++FE+g+v++k+
       CCD26087.2 385 PINKISDIFRVASSQASWVEVLPLTLCSHDENFKFLrMKDDNTKVVKLANPKTLEYQVVRTTLLPGILKTVKENRKHSLP-IKVFETGDVVFKN 477
                      77889999999999**********************9999****************************************.************* PP

  tRNA_synthFbeta 110 .seeelpeeerhlaivltgkreeeswsekaravdfydlkgivealleslgiek.............vefep.aehpalhpgrsAeikvdgk... 185
                       s e+++ +erh +++++gk+            +f+ + g++ +++++++  +             +++e+ ++ ++++pgr A+++++ k   
       CCD26087.2 478 nSLERKAYNERHWGAIYVGKN-----------SGFEIIQGLLGKIMQTFRT-EwiadygagstgrgYWIEQdDSLSTYFPGRGARVMFRSKege 559
                      *********************...........*******************.44699**************888*************9777777 PP

  tRNA_synthFbeta 186 ...evGvlGelhpevleafdlkqrvyvfEld 213
                         +vG lG lhpev+++fd++  ++++El+
       CCD26087.2 560 nakVVGNLGVLHPEVMNNFDVPFAASFVELN 590
                      777**************************98 PP

>> PhetRS_B1  Phe-tRNA synthetase beta subunit B1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.3   2.1e-32   9.4e-29       1      82 [.       1      78 [.       1      79 [. 0.96
   2 ?    0.1   0.0      0.22   9.8e+02      46      68 ..     328     350 ..     296     357 .. 0.83

  Alignments for each domain:
  == domain 1  score: 99.5 bits;  conditional E-value: 2.1e-32
   PhetRS_B1  1 MPtisvkkeaLfkalgkelteeeledllfefGlElDeiveeeekkkadkkseeviykidipAnryDLLcleglaralkvFlg 82
                MPt+sv+k++Lf++lgk++ +ee+++l+fefG+ElDe ++ee+     k++ee  +ki+i AnryDLLc+eg+a+ l+ +lg
  CCD26087.2  1 MPTVSVNKKQLFDLLGKQYGNEEFDELCFEFGIELDEDTTEEA----LKNNEEPELKIEIGANRYDLLCIEGIAQSLNEYLG 78
                ******************************************9....67789999***********************9988 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.22
   PhetRS_B1  46 kadkkseeviykidipAnryDLL 68 
                 + ++++++ i+ + ip  r D+L
  CCD26087.2 328 AVKSNKSDDILEVTIPITRTDVL 350
                 45566778999**********98 PP

>> B3_4  B3/4 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0   8.2e-29   3.7e-25       2     173 ..     104     267 ..     103     268 .. 0.93

  Alignments for each domain:
  == domain 1  score: 88.6 bits;  conditional E-value: 8.2e-29
                 SSEEEEEEEES--.-----HHHHHHHHHTT-----HHHHHHHHHHHHHT-.....-EEEEEGGGTBTEEE.EEE--TTEEEEBTTS-EEEE-T...... CS
        B3_4   2 cpryaarvlrgvkktapspewlqrrLrragirpinnvVDitNyvmlelgq.....PlhafDldkiqgdiv.vrlakegeklvtldgkerelde...... 88 
                 +p++aa++lr++++t++s               ++++++++++++++l++     +++++D+d+++g++   +l++++ ++++l+ +++e ++      
  CCD26087.2 104 RPYAAAAILRNITFTEKS---------------YASFIALQDKLHSNLCRnrslvAIGTHDYDTMEGPVYyRALPPKDIHFIPLN-QTKEFNGaelief 186
                 89****************...............*********************************9888455667777999998.6688877788889 PP

                 .....................TSEEEETEEEEE.EETTTEEBTTTB--TT--EEEEEEEE--HHHHHHHHHHTT---HHHHHHHH---TTTHHHHHHHH CS
        B3_4  89 .....................edlviadsekpv.slagvmggeeskvsedTknvfleaaafdpvsirktarrlglrseaskrfergvdpekleaaldra 165
                                      + ++++d++++v sl++++++e++k++ dT+nvf+ ++a                          +d++k++++l+++
  CCD26087.2 187 ykqpeqknnlgrfvplienspVFPIMMDKNDVVcSLPPLINSEHTKITLDTRNVFIDITA--------------------------IDKTKADIVLNQL 259
                 999999999***************************************************..........................************* PP

                 HHHHHHHH CS
        B3_4 166 vallselc 173
                 va++s++c
  CCD26087.2 260 VAMFSRYC 267
                 *******9 PP

>> B5  tRNA synthetase B5 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.029   1.3e+02      10      52 ..      13      64 ..       4      81 .. 0.70
   2 ?   -3.5   0.0       3.1   1.4e+04      21      32 ..     108     119 ..      94     168 .. 0.73
   3 !   53.1   0.0   6.4e-18   2.9e-14       2      67 .]     298     365 ..     297     365 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.029
                HHHTS---HHHHHHHHHHTT-E..........EESSTTCEEEE--TT-TT-- CS
                xxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxxxxxx RF
          B5 10 kllGidlseeeiikiLkrlgce.........riekdkdlllVtvPswRsDle 52
                 llG ++ +ee  ++  + g+e          +++++ +l++++ + R+Dl+
  CCD26087.2 13 DLLGKQYGNEEFDELCFEFGIEldedtteeaLKNNEEPELKIEIGANRYDLL 64
                5677666667776666667776555555555445666689999999999986 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.1
                 HHHHHHHTT-E. CS
                 xxxxxxxxxxxx RF
          B5  21 iikiLkrlgcer 32 
                  + iL+++ ++ 
  CCD26087.2 108 AAAILRNITFTE 119
                 567888888872 PP

  == domain 3  score: 53.1 bits;  conditional E-value: 6.4e-18
                 EEEHHHHHHHHTS---HHHHHHHHHHTT-E...EESSTTCEEEE--TT-TT--SHHHHHHHHHHHH-G CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
          B5   2 slrvekinkllGidlseeeiikiLkrlgce..riekdkdlllVtvPswRsDlereeDliEEvaRlyGY 67 
                 + +v +in+ lG++ ++e+i+ +Lkr+ ++   ++k +d l+Vt+P +R+D+++++D++E+ a  yG+
  CCD26087.2 298 ETSVTYINSALGLEQTPEQIVACLKRMSLDavKSNKSDDILEVTIPITRTDVLHPCDIMEDAAVGYGF 365
                 67999***********************99665688889****************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       438  (0.0244297); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 4161.71
//
Query:       CCD26088.2  [L=1707]
Description: hypothetical protein NDAI_0G03110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.8e-61  206.2   0.0    1.5e-37  129.4   0.4    2.5  2  Pkinase       Protein kinase domain
    2.4e-26   92.6   0.0      5e-21   75.2   0.0    2.3  2  Pkinase_Tyr   Protein tyrosine kinase
    9.1e-06   25.8   0.0      2e-05   24.7   0.0    1.6  1  Response_reg  Response regulator receiver domain
    0.00013   21.4   0.0       0.02   14.2   0.0    2.4  2  Kinase-like   Kinase-like
    0.00063   19.7   0.1      0.086   12.8   0.2    2.3  2  APH           Phosphotransferase enzyme family
     0.0016   18.1   0.2        1.5    8.4   0.0    3.2  3  FTA2          Kinetochore Sim4 complex subunit FTA2
     0.0026   17.1   0.1     0.0047   16.3   0.1    1.3  1  Kdo           Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.023   14.3   0.6       0.11   12.1   0.6    2.0  1  RIO1          RIO1 family
      0.035   14.1   0.0       0.12   12.4   0.0    1.9  1  PAS           PAS fold


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.4   0.4   7.7e-41   1.5e-37       1     147 [.     767     915 ..     767     952 .. 0.89
   2 !   73.8   0.0   6.7e-24   1.3e-20     152     264 .]    1084    1195 ..    1074    1195 .. 0.86

  Alignments for each domain:
  == domain 1  score: 129.4 bits;  conditional E-value: 7.7e-41
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklk.hpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                 y  l+ + +G++G+Vy a++k tg+ +A+K++kk+++  k++ ++v +E +i+   +  p++ rl+ +f++k++l+lv+ey++gg+la l++  gsl++
  CCD26088.2 767 YDILKPISKGAYGSVYLARKKITGEYFAIKVLKKSDMVTKNQvTNVKSERAIMMVQSdKPYVARLFATFQNKENLFLVMEYLPGGDLAALIKMMGSLPD 865
                 56778899*****************************999999********9887666***************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEE CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlake 147
                 e +k++ ++i++g++ +H++giiH DlKp+N+Lid+kg++K+tDFGl++ 
  CCD26088.2 866 EWVKQYSTEIISGVDDMHQNGIIHHDLKPDNLLIDSKGHIKLTDFGLSRA 915
                 ***********************************************986 PP

  == domain 2  score: 73.8 bits;  conditional E-value: 6.7e-24
                  CSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS-HHHHHHHHHHT-S CS
     Pkinase  152 skltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeaseiseeakdllkkllkk 247 
                  ++ ++f gt++YlAPE +++++ + ++D+Ws+G+il+el++g ppf+ ++ +  ++k+l       ki   + k   +e++ is+eakdl+ kll++
  CCD26088.2 1084 KQDKKFFGTPDYLAPETIEGSGEGDHCDWWSVGCILFELIFGYPPFHTSTPEGVFKKILAG-----KIEWpKFKSPEEERDFISPEAKDLILKLLTV 1175
                  34789******************************************99999988888888.....44332334445566667************** PP

                  SGCCSTT...HHHHHTSGGG CS
     Pkinase  248 dpkkRlt...aeellqhpyl 264 
                  d +kRl+   aee+++hpy+
  CCD26088.2 1176 DVSKRLGtngAEEIKAHPYF 1195
                  ******9999*********8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0   2.5e-24     5e-21       4     153 ..     770     916 ..     767     943 .. 0.88
   2 !   15.0   0.0   5.8e-06     0.011     158     222 ..    1082    1145 ..    1073    1172 .. 0.85

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 2.5e-24
                  EEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTT..SSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   4 gkklGeGafGkVvegtlkgekekkevkVavKtlkee..ateeekeelleeakimkkl.khpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                   k + +Ga+G+V+ ++ k     + +  a+K+lk++   t+++ +++ +e +im+   ++p + +l +   ++e+l++v+ey++gGdL   ++     
   CCD26088.2 770 LKPISKGAYGSVYLARKK----ITGEYFAIKVLKKSdmVTKNQVTNVKSERAIMMVQsDKPYVARLFATFQNKENLFLVMEYLPGGDLAALIKMM--G 861
                  67899**********999....777889999997651145666888999988877666********************************99998..9 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi 153
                  +l  +++ ++++++ +G++ ++++ ++H dl   N L++++ ++k++DfGL+r+ 
   CCD26088.2 862 SLPDEWVKQYSTEIISGVDDMHQNGIIHHDLKPDNLLIDSKGHIKLTDFGLSRAG 916
                  ****************************************************975 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 5.8e-06
                   EEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTE CS
  Pkinase_Tyr  158 eyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkegk 222 
                   + +++++      ++apE+++ +    + D Ws G +l+E++  g  p+++ ++e v++k+ +gk
   CCD26088.2 1082 DSKQDKKFFGTPDYLAPETIEGSGEGDHCDWWSVGCILFELIF-GYPPFHTSTPEGVFKKILAGK 1145
                   4556666677889****************************98.***********9999997765 PP

>> Response_reg  Response regulator receiver domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   9.8e-09     2e-05       1     111 [.    1572    1681 ..    1572    1682 .. 0.84

  Alignments for each domain:
  == domain 1  score: 24.7 bits;  conditional E-value: 9.8e-09
                    EEEESSSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHH.ESEEEEESSCSSSEHHHHHHHHHHCT...TTSEEEEEESSTSHHHHHHHHH CS
  Response_reg    1 vlivdDdplvrellrqlleeegyeevaeaedgkealellkeek.vdlillDinmpgmdGlellkeireed...pelpviiltahseeedavealk 91  
                    +l+++  p+ r  + + le+ g+ +v +a+ ++e++  +++e  +dli++ +++p+++  el++ ++ ++   + +p+++lt++ e     ea++
    CCD26088.2 1572 ILLCEPIPIHRYRIIKDLESLGC-TVIAASGADELVSRADAEItFDLIITTLKLPNVSSTELIRLLKFTNgtnSATPIVALTSYYE-----EAMN 1660
                    68888889999999999******.9999***********76655**********************888777788*******7776.....6666 PP

                    CTESEE.EESSG-HHHHHHHH CS
  Response_reg   92 agaddf.lsKpfdpeeLlkal 111 
                     +++d+ l Kp++++++++ +
    CCD26088.2 1661 SNVFDYvLEKPLQMKDIRNLI 1681
                    666665268999999998765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0095        19      18      77 ..     771     829 ..     765     836 .. 0.82
   2 !   14.2   0.0     1e-05      0.02     152     191 ..     874     912 ..     863     923 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.0095
  Kinase-like  18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlkeqelairllrgknpeqA 77 
                  +++ kg  + v++++ + tge++a+kv    +   k+++ ++k +  ai  ++ + p+ A
   CCD26088.2 771 KPISKGAYGSVYLARKKITGEYFAIKVLKKSDMVTKNQVTNVKSER-AIMMVQSDKPYVA 829
                  688999999*******************999999****99999876.3444455666665 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 1e-05
  Kinase-like 152 qlirlaanLqakglvhgkftvdnllldekgglmlggftaL 191
                  ++i  +  ++++g++h ++++dnll d kg ++l++f+ L
   CCD26088.2 874 EIISGVDDMHQNGIIHHDLKPDNLLIDSKGHIKLTDFG-L 912
                  57888999*****************************6.4 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.016        31       4      85 ..     772     858 ..     770     870 .. 0.65
   2 !   12.8   0.2   4.3e-05     0.086     165     199 ..     884     916 ..     863     919 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.016
                 EE--.SSCEEEEEEETT.--EE....EEEE-TT..S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS..H CS
         APH   4 elsggasnrtylvttpa.gryv....lrrnppa..raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr..k 85 
                 ++s ga+  +yl   +  g+y+    l+ +          + +e a++ + ++  ++v++++a     + ++ lf+++ey+pg +l+   k
  CCD26088.2 772 PISKGAYGSVYLARKKItGEYFaikvLKKSDMVtkNQVTNVKSERAIMMVQSDK-PYVARLFA---TFQNKENLFLVMEYLPGGDLAAliK 858
                 566666666666666555555543333333333333445566888888885555.6899***9...78888889***********998543 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 4.3e-05
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                 + +++H Dl+p+Nll+d  +g++  + Df+++++g
  CCD26088.2 884 QNGIIHHDLKPDNLLID-SKGHI-KLTDFGLSRAG 916
                 6789*************.77777.69999999888 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.25     5e+02     168     201 ..     166     199 ..     159     203 .. 0.84
   2 !    4.7   0.0      0.01        20      14      70 ..     758     814 ..     746     833 .. 0.73
   3 !    8.4   0.0   0.00073       1.5     162     204 ..     858     898 ..     839     914 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.25
        FTA2 168 keqeelevsqlpkllrdlkklhklgIvvrDlkee 201
                 +++e  ++s+++  l+d+  ++++gI++rD  ++
  CCD26088.2 166 NDNEDSIQSEFNPYLHDIIAFEACGILIRDSTTN 199
                 5667778899999*****************8765 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.01
        FTA2  14 kpFdfsaekdiefleyLgkglhsiVlkv..kirgkeYALKlFrfleaeeleeaeedlki 70 
                 +++ +s + d+++l+ + kg+ + V+ +  ki g+ +A+K+ ++ ++  ++++ ++ k 
  CCD26088.2 758 RRVPPSIK-DYDILKPISKGAYGSVYLArkKITGEYFAIKVLKKSDMV-TKNQVTNVKS 814
                 56666666.999*****99999977655228**********9988443.3344444333 PP

  == domain 3  score: 8.4 bits;  conditional E-value: 0.00073
        FTA2 162 KelellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 K   + + ++e   ++  ++++ ++++h+ gI+++Dlk++n++
  CCD26088.2 858 KM--MGSLPDEWVKQYSTEIISGVDDMHQNGIIHHDLKPDNLL 898
                 55..556667777788899**********************86 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.4e-06    0.0047      93     173 ..     842     917 ..     796     944 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.4e-06
         Kdo  93 lllterlegaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrl 173
                 +l++e l g  dL++l++   +l++e  ++   ++   + ++h+ g+ H dl + n+l++ ++    +i l D+  +r  l
  CCD26088.2 842 FLVMEYLPG-GDLAALIKMMGSLPDEWVKQYSTEIISGVDDMHQNGIIHHDLKPDNLLIDSKG----HIKLTDFGLSRAGL 917
                 688888866.6999999998887777777788888899************************9....99999997666555 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.6   5.5e-05      0.11      82     149 ..     842     910 ..     780     913 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 5.5e-05
                 EEEEE--EETTEEGGBHHHCG-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1  82 vlvmefigedgvaapklkdvee..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                  lvme++   g  a+ +k + +  +e  +++  e+++ +  +  ++g++H DL   N+l+d++ ++ + D+
  CCD26088.2 842 FLVMEYLP-GGDLAALIKMMGSlpDEWVKQYSTEIISGVDDMH-QNGIIHHDLKPDNLLIDSKgHIKLTDF 910
                 69*****9.5666666777775557777888889999888877.99**************99878888887 PP

>> PAS  PAS fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.1e-05      0.12       8      48 ..      85     125 ..      78     161 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.1e-05
                 HHSSSEEEEEETTSBEEEECHHHHHHHSSTHHHCTTSBGGG CS
         PAS   8 eslpdpifvvDedgrilyvNaaaeellGlsreevlgkslld 48 
                 +  p++i+ vD dg+i y+++ +e+l+ +++ e ++  +l+
  CCD26088.2  85 DKNPSMILEVDLDGKIRYISPRWETLTRIPCPEYISDLILG 125
                 557999*************************9999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1707 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1180  (0.0658152); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.07u 0.33s 00:00:01.40 Elapsed: 00:00:00.51
# Mc/sec: 10157.04
//
Query:       CCD26089.2  [L=318]
Description: hypothetical protein NDAI_0G03120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-05   24.4   6.5    4.6e-05   23.4   6.5    1.5  1  bZIP_1      bZIP transcription factor
     0.0011   19.0   7.8     0.0011   19.0   7.8    1.8  1  bZIP_2      Basic region leucine zipper
  ------ inclusion threshold ------
      0.085   12.7   0.1       0.15   12.0   0.1    1.3  1  HTH_25      Helix-turn-helix domain
       0.16   12.8   0.3       0.16   12.8   0.3    2.2  2  GnHR_trans  Gonadotropin hormone receptor transmembrane regio


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   6.5     1e-08   4.6e-05       1      41 [.      36      76 ..      36      90 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1e-08
                XXXXXXXXXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  1 ekelKrekrkqkNReaArrsRqRKqaeieeLerrvkaLeke 41
                eke +r  r ++NR aA +sR++K+   + Le++++ +e+ 
  CCD26089.2 36 EKEQRRIERILRNRKAAHQSREKKRLHLKFLEQKCQIMENL 76
                7999********************************99875 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   7.8   2.4e-07    0.0011       2      44 ..      37      80 ..      33      88 .. 0.88

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.4e-07
                XXXXXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  2 ddeyrerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqL 44
                ++++r +R  +Nr Aa  sRekk+++ + le++ + +e+  +++
  CCD26089.2 37 KEQRRIERIlRNRKAAHQSREKKRLHLKFLEQKCQIMENLLSRI 80
                6888999**************************99999887776 PP

>> HTH_25  Helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   3.3e-05      0.15       3      39 ..      53      89 ..      53     111 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.3e-05
                HHHHHTTT--HHHHHHHSS--HHHHHHHHCT--TTSS CS
      HTH_25  3 raaRearglsleevaketkIrkdylealEeddfdalp 39
                ++ Re+++l l+ ++++ +I +++l ++++d +++l 
  CCD26089.2 53 HQSREKKRLHLKFLEQKCQIMENLLSRIDADVLQNLV 89
                588****************************988875 PP

>> GnHR_trans  Gonadotropin hormone receptor transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.3       1.4   6.4e+03      15      28 ..     158     171 ..     144     193 .. 0.48
   2 ?   12.8   0.3   3.6e-05      0.16       5      63 ..     223     279 ..     220     282 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.4
  GnHR_trans  15 sarqdlddltgert 28 
                   + dl++ +g + 
  CCD26089.2 158 TTETDLSAAIGSSL 171
                 33444444444333 PP

  == domain 2  score: 12.8 bits;  conditional E-value: 3.6e-05
  GnHR_trans   5 lelnpiCnkssarqdlddltgerthdrsleedlissyskeedigeveFdYDLCnevvdl 63 
                 +++ +i   +s +qd + l+ +++hd+s+ ed+  +   e+++ e  F   L  ++vd+
  CCD26089.2 223 SSISSINMIKSEPQDWNLLITKSEHDNSILEDFNIE--HEFEYNEHSFSDQLLTKTVDV 279
                 688899899999********************9777..899999999988887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1763  (0.0983323); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 2164.59
//
Query:       CCD26090.2  [L=393]
Description: hypothetical protein NDAI_0G03130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.2e-23   81.9   0.0    5.5e-23   81.5   0.0    1.0  1  Aminotran_5  Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   3.1e-27   5.5e-23      32     342 ..      44     359 ..      32     381 .. 0.82

  Alignments for each domain:
  == domain 1  score: 81.5 bits;  conditional E-value: 3.1e-27
                  SSSSHHHHHHHHHHHHHHHHHHHHHT-ST.GGGEEEESSHHH.HHHHHHHHCCCC-TTTSEEEEETTSHGGGTHHHHHHHHHHTEEEEEEEBETTSCB CS
  Aminotran_5  32 rsvhhlgkeatkaveearekvaelinaes.eeeiiftsGtte.ainlvalslarslkpgdeivvteaehhanlvpwqelakrtgakvkvipldeegel 127
                   +++h g+e+ ++++++ ++ ++l++  + + + i++ G+++ ++ ++  +l   +kp+d+++v +++  +     ++  +  ga+v+++++  +  +
   CCD26090.2  44 DALSHTGAEFVSIFQNVLKNTRKLFKSYDmKAQPIVIAGSGTlGFDIAGSNL---IKPKDKVLVLSTGFFSDS--FADCLQGYGAEVTKLTAPLGDVV 136
                  47899*******************9976523344555555555*********...******************..77777899*********999999 PP

                  EGGGHHHH--.TTEEEEEEESBETTTTEB--HHHHHHHHHH.T.T-EEEEE-TTTTTTS---HHHHTESEEEEETTT.TTSSTT-EEEEEEHHHHHTS CS
  Aminotran_5 128 dldeleklln.ektklvaithvsnvtGtiqpveeigklakk.k.galvlvDaaqavghipidvkklgvDflafsghK.llgPtGiGvlyvrkellekl 221
                   l+++e+ l+   + +v  thv ++tG+++++e+i +++++ + + +++vD++ a+g   ++++k++vD     ++K + +P+G+++ ++++++l+ +
   CCD26090.2 137 PLQDFEDELKkGHYTAVVATHVDTSTGVLNDIESISEVVQRiSpESFLFVDSVCAIGCETMEFDKWKVDYCLTASQKaIGAPPGLSISMISERALQFA 234
                  9********857899999***********************857*********************************8889**************999 PP

                  ..SS.STTS...EEEEETTEEE.....EHCTTGGGS.SS--HHHHHHHHHHHHHH..HCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES..-B-CTC CS
  Aminotran_5 222 eplllggem...veevsleett.....faeapskfeaGTpnvagiiglgaaleyl..eeigleaiekhekelaeyllerlkslpgvrlyg.pdkaerr 308
                      lg+     v   sl++++     ++++   + a Tp++  i +l  al+ +   e+g++    ++ke++++ ++rl +  +++l+    ++   
   CCD26090.2 235 ----LGKRNnsgVFFTSLKRWSpilkaYEGNLGAYFA-TPPTQLINSLDVALKQIleTEGGIDGRVLKHKETSDWFKDRLCKELNLKLVSkYPSNVSA 327
                  ....333330003455555555666666666666666.**************98878999********************886666664424556677 PP

                  BSEEEEEETTCSHHHHHHHHHHTTEEEEEE-TTT CS
  Aminotran_5 309 asivsfnfkgvhaedvatlLdeegIavrsGhhca 342
                  ++++s+ ++  ++++    L+e+g  + +G h  
   CCD26090.2 328 HGLTSIYVP--NPKETILSLKERGFIIAGGLHKE 359
                  778887776..57889999999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2889.44
//
Query:       CCD26091.2  [L=469]
Description: hypothetical protein NDAI_0G03140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.3e-206  684.6   0.0   3.8e-206  684.3   0.0    1.0  1  SHMT             Serine hydroxymethyltransferase
    4.1e-07   29.5   0.0    1.1e-06   28.0   0.0    1.7  1  Aminotran_1_2    Aminotransferase class I and II
    0.00038   19.8   0.0    0.00063   19.1   0.0    1.4  1  Beta_elim_lyase  Beta-eliminating lyase
    0.00058   18.9   0.0    0.00085   18.4   0.0    1.2  1  Aminotran_5      Aminotransferase class-V
  ------ inclusion threshold ------
       0.17   12.5   2.7       0.27   11.9   0.6    2.2  2  Cytochrom_B562   Cytochrome b562


Domain annotation for each model (and alignments):
>> SHMT  Serine hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  684.3   0.0  1.1e-209  3.8e-206       1     399 []      17     416 ..      17     416 .. 1.00

  Alignments for each domain:
  == domain 1  score: 684.3 bits;  conditional E-value: 1.1e-209
                 HHHHTHHHHHHHHHHHHHHHHSEE-STT-----HHHHHHHTSGGGG----EETTEESSST-HHHHHHHHHHHHHHHHHCT-STTTEEEE---SSHHHHH CS
        SHMT   1 leesdpevaeiikkekerqkeeieliasenftskavlealGsvltnkyaeGyPGkryyGGcefvdeveelaqdrakelfkldpakwgvnvqplsGsqan 99 
                 l+e+dpe+ +iik e +rqk++i liasenfts++v++alG+ l+nky+eGyPG+ryyGG+e +d++e l+q+ra+++f+l+ +kwgvnvq+lsGs+an
  CCD26091.2  17 LSETDPELEQIIKAEIDRQKHSIVLIASENFTSTSVFDALGTPLSNKYSEGYPGARYYGGNEQIDKIELLCQARALKAFNLTADKWGVNVQTLSGSPAN 115
                 6799*********************************************************************************************** PP

                 HHHHHHHT-TT-EEEEESCTTTSTGGGT-BTSS-B-SHHHHHSEEEEE-B-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-S---HHHHHHHHHHTT- CS
        SHMT 100 lavytallepgdrilgldladGGhlthGakveskkisassklfesveykvdketglidydelekkakefkPklivaGtsaysrlidyarlreiadevga 198
                 l+vy+a+++p+dr++gl l+dGGhl+hG+++e++kisa+s++fes++y+v++etg+idyd+le++a +++Pk++vaGtsay+rlidy+r+reiad++ga
  CCD26091.2 116 LQVYQAIMRPHDRLMGLYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNQETGIIDYDTLEQNAILYRPKVLVAGTSAYCRLIDYKRMREIADKCGA 214
                 *************************************************************************************************** PP

                 EEEEE-GGGHHHHHTTSS--GCCTSSEEEEESSSTT-S-S-EEEEEC-SEEEEE.TTTEEEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHCTSH CS
        SHMT 199 yllvdmahiaGlvaagvipsPfeyadvvtttthktlrGprgglillrkgvksvd.ktgkevleelekkinsavfPglqGGPlnhviaakavalkealep 296
                 yl+vdmahi+Gl+aagvipsPfeyad+vtttthk+lrGprg++i++r+g++sv+ ktgke+ ++le+ in++vfPg+qGGP+nh+iaa+a+alk++ +p
  CCD26091.2 215 YLMVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGLRSVNaKTGKEIYYDLENPINFSVFPGHQGGPHNHTIAALATALKQVDTP 313
                 *************************************************************************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTSSTTTT-SEEEEESHHHHHTT--HHHHHHH CS
        SHMT 297 efkvyqkqvlknakalaealkekgyklvsgGtdnhlvlvdlrekgldGkraekvlekvnitankntvPgdksalvtsGlrlGtpaltsrgfkeedlekv 395
                 efk+yq+ v+knak+l+ ++k+ gyklvs+Gtd+h+vlv+lre+g+dG+r+++v++k+ni  nkn++Pgdksalv++G+r+G+pa+t+rg++eed++k+
  CCD26091.2 314 EFKEYQQLVVKNAKTLELEFKKLGYKLVSNGTDSHMVLVSLREQGIDGARVDYVCDKANIVLNKNSIPGDKSALVPGGIRIGAPAMTTRGMGEEDFQKI 412
                 *************************************************************************************************** PP

                 HHHH CS
        SHMT 396 akfi 399
                 a++i
  CCD26091.2 413 AQYI 416
                 **97 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.2e-10   1.1e-06      63     354 ..      98     402 ..      78     406 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 3.2e-10
                    CHTTGGEGEEEESHHHHHHHHHHHHHHHTTT-E...EEEEESS-THHHHHHHHTTSE.EEEEEBEETTTTEE-HHHHHHHHTTHHCTTE..TEEEE CS
  Aminotran_1_2  63 lklkreaavvvgsGagaliealifllklnpgde...ilvpdptyasyknilrlsgge.vvryplyseedfhldlealeealkeapegnk..ktkvi 152
                    ++ k  ++v+++sG+ a++++  ++++  p+d+    ++pd  + s+  + +++++  v +y   ++  ++++ e  + +++++ ++ +  ++kv+
     CCD26091.2  98 TADKWGVNVQTLSGSPANLQVYQAIMR--PHDRlmgLYLPDGGHLSHGYATENRKISaVSTYF--ESFPYRVNQETGIIDYDTLEQNAIlyRPKVL 189
                    55555679******************9..777645589******************9666665..3433334444444445544444445566777 PP

                    EEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSSHTHHHHGGSTTSTTEEEEEESSSTT.SSGGG-EEEEEEEH.......... CS
  Aminotran_1_2 153 lvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsldavatranveeepnllivgslsKaf.GlaGeRvGyilgna.......... 237
                    +       t + + l +++ + ++a+k +++l+vD+a+  +   +     +++   e+ + +++++  K++ G  G   ++i+             
     CCD26091.2 190 VAG-----TSAYCRLIDYKRMREIADKCGAYLMVDMAHISGLIAA----GVIPSPFEYAD-IVTTTTHKSLrGPRG---AMIFFRRglrsvnaktg 272
                    665.....4566666677777777*******************82....33666666666.999999998744334...66666667777777955 PP

                    .HHHHHHHHHHHHHTS..........SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTEEEECCS..CSSEEEEEETHHCHHHH CS
  Aminotran_1_2 238 .avvsqlrklsrpfls..........ssllqaavaaalsdallkqseleemrqrlqkrrkelrdeLaelglkvlasq..sgmflltdlsaetakel 320
                     +      +l +p+++           +++ aa+a+al+ ++    e++e +q + k++k+l  e+++lg k +++   s+m+l+++ ++  + + 
     CCD26091.2 273 kE---IYYDLENPINFsvfpghqggpHNHTIAALATALKQVDT--PEFKEYQQLVVKNAKTLELEFKKLGYKLVSNGtdSHMVLVSLREQGIDGAR 363
                    54...55555555555555888777778888888888888885..4***********************888777654499999987777766666 PP

                    HHHHHHTCTEEEEEGGGGTS.....TTEEEEECTTS-HH CS
  Aminotran_1_2 321 skkLleevgvyvtpgtsftv.....pgrlRitvAgltee 354
                     +   ++ ++++ ++++++      pg +Ri  +++t+ 
     CCD26091.2 364 VDYVCDKANIVLNKNSIPGDksalvPGGIRIGAPAMTTR 402
                    67799999**********9999999999*****999975 PP

>> Beta_elim_lyase  Beta-eliminating lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.8e-07   0.00063      28     227 ..      74     424 ..      60     435 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 1.8e-07
                      CT--HHHHHHHHHHHHHTT-SEEEE.........ES-HHHHHHHHHHHH--TTEEEEEETT......-HHHHSSTTHHHHCC--...EEEEE-E CS
  Beta_elim_lyase  28 YgedktvnrLedavaelfgkeaalf.........vpqGtaAnsillkillqrgeevivtep......ahihfdetgaiaelagv...klrdlkn 103
                      Yg+++++ ++e  +++ + k+  l          + +G  An   +++++++++  +          +h++ +e++ i++++      +  +++
       CCD26091.2  74 YGGNEQIDKIELLCQARALKAFNLTadkwgvnvqTLSGSPANLQVYQAIMRPHDRLMGLYLpdgghlSHGYATENRKISAVSTYfesFPYRVNQ 167
                      6666665555555555333333333344444444889***********9977766554433788999********9998875441103444444 PP

                      BTTTBE-HHHHHH.HS--S-TTS-EEEEEEEESSBTTTTTB---HHHHHHHHHHHHHCT-EEEEEETTHHHHHHHHTS-CHHHHTTSSEEEEES CS
  Beta_elim_lyase 104 keaGkmdleklea.aikevgaheekiklisltvTnntagGqvvsleelrevaaiakkygiplhlDgARfanaakslgeivkemfsyvDsvtmsl 196
                      + +G +d + le+ ai    +     + ++++ T  +       l   +++++ia+k g  l++D A +     + g+i++  f+y+D+vt   
       CCD26091.2 168 E-TGIIDYDTLEQnAILY--R-----PKVLVAGTSAY-----CRLIDYKRMREIADKCGAYLMVDMAHISGL-IAAGVIPS-PFEYADIVTTTT 246
                      4.4*********966666..3.....34677777776.....5666667777889999999******98765.58888886.69********** PP

                      SSTT--SS-EEEEE-HH............................................................................. CS
  Beta_elim_lyase 197 kKdllanvGgvlafrddel........................................................................... 215
                       K l  + G++++fr+                                                                              
       CCD26091.2 247 HKSLRGPRGAMIFFRRGLRsvnaktgkeiyydlenpinfsvfpghqggphnhtiaalatalkqvdtpefkeyqqlvvknaktlelefkklgykl 340
                      ***************9966888888888888888888888888888888888877777777777777777776666666666666666666666 PP

                      ..........................................................................HHHHHHHHHH CS
  Beta_elim_lyase 216 ........................................................................edylaerveqrk 227
                                                                                               +y++++v+++k
       CCD26091.2 341 vsngtdshmvlvslreqgidgarvdyvcdkanivlnknsipgdksalvpggirigapamttrgmgeedfqkiAQYIDKAVQLAK 424
                      666666666666666666666666666666666666666666666666666666666666666666666666666666666555 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   2.4e-07   0.00085     155     342 ..     199     386 ..     165     412 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 2.4e-07
                  B--HHHHHHHHHHTT-EEEEE-TTTTTTS---H...HHHTESEEEEETTT.TTSSTT-EEEEEEHHHHHTS..SS.STTSEEEEET.TEEEEHCTTGG CS
  Aminotran_5 155 iqpveeigklakkkgalvlvDaaqavghipidv...kklgvDflafsghK.llgPtGiGvlyvrkellekleplllggemveevsl.eettfaeapsk 247
                  + + +++ ++a k ga+++vD+a   g i   v       +D+++ ++hK l gP G  ++++r+  l ++  +++g+e    ++l + + f+  p  
   CCD26091.2 199 LIDYKRMREIADKCGAYLMVDMAHISGLIAAGVipsPFEYADIVTTTTHKsLRGPRGA-MIFFRRG-LRSV-NAKTGKE--IYYDLeNPINFSVFPG- 290
                  568899999*************986554443331103345799**************6.5555654.4444.5799999..4556657777888888. PP

                  GS.SS--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCTSTTEEEES.-B-CTCBSEEEEEETTCSHHHHHHHHHHTTEEEEE....E-TT CS
  Aminotran_5 248 feaGTpnvagiiglgaaleyleeigleaiekhekelaeyllerlkslpgvrlygpdkaerrasivsfnfkgvhaedvatlLdeegIavrs....Ghhc 341
                   + G p+   i +l++al+ ++  ++++ ++   + a++l+ + k+l+   +  ++ ++ +  +vs+  +g++ + v  ++d+++I +      G ++
   CCD26091.2 291 -HQGGPHNHTIAALATALKQVDTPEFKEYQQLVVKNAKTLELEFKKLGYKLV--SNGTDSHMVLVSLREQGIDGARVDYVCDKANIVLNKnsipGDKS 385
                  .889******************************************987777..456788888899999*****************998766777766 PP

                  T CS
  Aminotran_5 342 a 342
                  a
   CCD26091.2 386 A 386
                  6 PP

>> Cytochrom_B562  Cytochrome b562
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       1.1   3.8e+03      45      59 ..     305     320 ..     296     330 .. 0.54
   2 ?   11.9   0.6   7.4e-05      0.27      23      75 ..     407     458 ..     402     462 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.1
  Cytochrom_B562  45 sklek.dseeqkdYqe 59 
                     + l++ d +e+k+Yq+
      CCD26091.2 305 TALKQvDTPEFKEYQQ 320
                     2234445555666654 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 7.4e-05
  Cytochrom_B562  23 eelkkalkelraaaedakeatpsklekdseeqkdYqeGldklidqldkaeala 75 
                     e+++k ++ +++a++ ake +  +l kd+++ kd+++ +d+  d ++++++++
      CCD26091.2 407 EDFQKIAQYIDKAVQLAKEVQQ-SLPKDANKLKDFKAKIDEGSDVITNIKQEI 458
                     5788888888888888888888.6667**********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       834  (0.0465168); expected 358.6 (0.02)
Passed bias filter:                      733  (0.0408835); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.25s 00:00:00.85 Elapsed: 00:00:00.39
# Mc/sec: 3639.42
//
Query:       CCD26092.2  [L=380]
Description: hypothetical protein NDAI_0G03150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.9e-25   88.7   0.3    1.9e-24   86.5   0.2    2.0  2  Pkinase         Protein kinase domain
    1.9e-14   53.6   0.0    2.7e-14   53.1   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00087   18.2   0.0     0.0014   17.5   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
     0.0012   18.2   0.0      0.002   17.5   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.011   15.1   0.0      0.069   12.5   0.0    2.0  2  Kinase-like     Kinase-like
      0.033   13.7   0.0       0.06   12.9   0.0    1.4  1  YrbL-PhoP_reg   PhoP regulatory network protein YrbL
      0.093   12.6   0.0       0.19   11.6   0.0    1.5  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.25   6.5e+02      23      78 ..      26      85 ..      17     105 .. 0.69
   2 !   86.5   0.2   7.2e-28   1.9e-24     102     196 ..     149     256 ..     115     377 .. 0.66

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.25
                TTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHS......CTTB--EEEEEEESSEEEEEEE CS
     Pkinase 23 tgkivAvKkikkekakkkkekkvlrEikilkklk......hpnivrlyevfeekdelylvle 78
                 ++++AvK ++++     ++   + E++i+kk+         ++++l++  +++del l+l 
  CCD26092.2 26 VQDKYAVKSLATDYVVPPHN--PRYELAIMKKILrlgdfrNAHLIELLDHSKRQDELELLLL 85
                56889999999888877554..5666666665422223337888888888888888776665 PP

  == domain 2  score: 86.5 bits;  conditional E-value: 7.2e-28
                 HHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHHHHH CS
     Pkinase 102 kiakqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelesssk........ltsfvgtseYlAPEvl.keneyskkvDvWslGvil 187
                  ++ q++egl ylHs+giiHrD+Kp+NiL++ +ge    l itDFG++   + s++        + + v ts Y APE+l + ++y  +vD+W+l v++
  CCD26092.2 149 GFFLQLVEGLTYLHSHGIIHRDIKPQNILLEMNGEdniqLIITDFGISYDETDSKQvvterpddKITDVSTSFYKAPELLfGVKNYRFEVDIWALLVLV 247
                 5789***************************8887798999*******99999999999999999999************999************9999 PP

                 HHHHHSS-S CS
     Pkinase 188 yelltgkpp 196
                  + +  ++ 
  CCD26092.2 248 SQWFQVSTN 256
                 776554433 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   1.1e-17   2.7e-14      30     198 ..      29     250 ..      14     266 .. 0.80

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 1.1e-17
                  EEEEEEEST.....TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT........................... CS
  Pkinase_Tyr  30 kVavKtlke.....eateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk........................... 95 
                  k avK+l        ++ + + ++++ +  + ++++ ++++ll    ++++l +++ + ++ +L++f+ k+                           
   CCD26092.2  29 KYAVKSLATdyvvpPHNPRYELAIMKKILRLGDFRNAHLIELLDHSKRQDELELLLLFYPS-TLDEFMIKNykpsygndlkptrrkfnpyysltkspm 125
                  566777654111112344446778888888899999***********99999998887775.8*********************************** PP

                  ...........CTTTSBHHH.HHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE....TTEEEE-STTTHEETTTSSEE.EETTSST....SGGGGS CS
  Pkinase_Tyr  96 ...........ekekltlkd.llsfalqvAkGmeyLeskklvHrdlaarNvLlse....nkvvkisDfGLardiekddey.vkkeeak....lpvkWm 172
                              ++ +++++  + f lq+ +G+ yL+s+ ++Hrd+  +N+Ll+     n +  i+DfG++ d +++++  +++ + k        + 
   CCD26092.2 126 eeqeiepynmvYENYFDINQySYGFFLQLVEGLTYLHSHGIIHRDIKPQNILLEMngedNIQLIITDFGISYDETDSKQVvTERPDDKitdvSTSFYK 223
                  *********9988888888735789****************************97555467899********99777766433322221121345577 PP

                  -HHHHHHSE.EEHHHHHHHHHHHHHHH CS
  Pkinase_Tyr 173 apEslkekk.ftsksDvWsfGvllwEi 198
                  apE l+  k +  + D+W+  vl+   
   CCD26092.2 224 APELLFGVKnYRFEVDIWALLVLVSQW 250
                  *****98776*********98887655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.6e-07    0.0014     313     370 ..     152     205 ..     149     244 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 5.6e-07
  Pkinase_fungal 313 rDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesg 370
                      + ++g+  L+   gi+HrDi  +Nil+     +ge++  Li  D+ +++++++s+++
      CCD26092.2 152 LQLVEGLTYLH-SHGIIHRDIKPQNILLE---MNGEDNIQLIITDFGISYDETDSKQV 205
                     56789999***.****************9...66777777887888888887666653 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.9e-07     0.002     133     170 ..     160     197 ..     153     207 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.9e-07
         Kdo 133 klhragvnHadlyaknillqqeeeeeaeiwliDldkar 170
                  lh+ g+ H+d+ ++nill+ ++e+++++++ D+  ++
  CCD26092.2 160 YLHSHGIIHRDIKPQNILLEMNGEDNIQLIITDFGISY 197
                 59*******************************97655 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.15   3.9e+02      18      59 ..      13      53 ..       9      70 .. 0.73
   2 ?   12.5   0.0   2.7e-05     0.069     151     189 ..     152     194 ..     134     245 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.15
  Kinase-like 18 ellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerl 59
                 +llk  +   +++v+d++  ++la    ++p ++++ +l  +
   CCD26092.2 13 KLLKSTKTARIYNVQDKYAVKSLATDY-VVPPHNPRYELAIM 53
                 789999************888887553.44445556666555 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 2.7e-05
  Kinase-like 151 lqlirlaanLqakglvhgkftvdnllldekg....glmlggft 189
                  lql+    +L+++g++h +++++n+ll+ +g    +l++++f+
   CCD26092.2 152 LQLVEGLTYLHSHGIIHRDIKPQNILLEMNGedniQLIITDFG 194
                  78999999*******************9888333346666666 PP

>> YrbL-PhoP_reg  PhoP regulatory network protein YrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   2.4e-05      0.06     130     166 ..     156     192 ..     139     198 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.4e-05
  YrbL-PhoP_reg 130 efleelldnhivtndlsakNivvkknsegeeelvlvD 166
                    e l +l    i+ +d++++Ni+++ n e++ +l++ D
     CCD26092.2 156 EGLTYLHSHGIIHRDIKPQNILLEMNGEDNIQLIITD 192
                    5567889999***********************9998 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.3e-05      0.19     163     187 ..     161     188 ..     124     196 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 7.3e-05
                 SS-EEEE-SS-SGGGEEEC.....TTEE CS
         APH 163 elptvllHgDlhpgNllvd...pddgrv 187
                   +++++H+D++p+N+l++   +d+ ++
  CCD26092.2 161 LHSHGIIHRDIKPQNILLEmngEDNIQL 188
                 56799*************9865555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       423  (0.0235931); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 3265.54
//
Query:       CCD26093.2  [L=285]
Description: hypothetical protein NDAI_0G03160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-18   67.9   0.0    2.3e-18   67.0   0.0    1.5  1  ABC_tran      ABC transporter
    4.9e-10   39.7   2.4    0.00056   19.8   0.1    2.5  3  AAA_21        AAA domain, putative AbiEii toxin, Type IV TA s
    2.3e-06   27.2   0.0      0.017   14.6   0.0    2.2  2  SMC_N         RecF/RecN/SMC N terminal domain
    0.00079   19.1   0.0     0.0016   18.1   0.0    1.5  1  AAA_29        P-loop containing region of AAA domain
      0.002   17.9   0.0     0.0028   17.4   0.0    1.3  1  AAA_15        AAA ATPase domain
     0.0025   18.4   0.1     0.0046   17.5   0.0    1.6  2  AAA_23        AAA domain
     0.0068   16.3   0.0      0.011   15.6   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
     0.0099   16.4   0.1      0.021   15.4   0.1    1.5  1  AAA_18        AAA domain
  ------ inclusion threshold ------
      0.035   14.2   0.0      0.059   13.4   0.0    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
      0.046   13.8   0.0      0.072   13.1   0.0    1.3  1  Dynamin_N     Dynamin family
       0.05   14.0   0.3        1.4    9.3   0.2    2.6  2  AAA           ATPase family associated with various cellular 
      0.064   10.8   0.1      0.084   10.4   0.1    1.1  1  DUF3584       Protein of unknown function (DUF3584)
      0.084   12.2   0.0       0.12   11.6   0.0    1.2  1  FtsK_SpoIIIE  FtsK/SpoIIIE family
       0.12   12.0   0.0       0.19   11.3   0.0    1.2  1  AAA_27        AAA domain
       0.14   11.9   0.0       0.26   11.0   0.0    1.4  1  AAA_24        AAA domain
       0.15   12.5   0.2       0.23   11.9   0.2    1.5  1  AAA_16        AAA ATPase domain
       0.15   12.1   0.1         12    5.8   0.0    2.4  2  MutS_V        MutS domain V
       0.15   11.3   0.0       0.24   10.7   0.0    1.2  1  Zeta_toxin    Zeta toxin
       0.19   11.4   0.0       0.35   10.5   0.0    1.4  1  SRP54         SRP54-type protein, GTPase domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   2.4e-21   2.3e-18       3     136 ..      25     172 ..      23     173 .. 0.72

  Alignments for each domain:
  == domain 1  score: 67.0 bits;  conditional E-value: 2.4e-21
                 EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.......HHHTCHHHHHHHSTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxx RF
    ABC_tran   3 nvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren.......esdeeiekalsklgl 94 
                 +++l++  ++++ +vG nGaGKStLlkll+g++   +G+i+++g d  + +l+  ++e+   +++ q+   l  +++       ++d  + ++l+++gl
  CCD26093.2  25 DIKLQIPWNKRTLVVGANGAGKSTLLKLLSGKHLCLNGKIRVNGLDPFS-PLSMHQEEVNSEEKDWQVTTYL--GTEwchmsiiNRDIGVLELLESIGL 120
                 68999999***********************************888777.4555555544444443322222..3333555555445556666666666 PP

                 GG............TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xx............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  95 ke............lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                 ++            + dt++  +++ LS Gqk+rv+la+ llk  k+lllDE t
  CCD26093.2 121 NHfkergeklieilDIDTNW--RMHRLSDGQKRRVQLAMGLLKPWKVLLLDEVT 172
                 66555555555543233333..44****************************88 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   5.9e-07   0.00056       2      21 ..      36      55 ..      35      92 .. 0.90
   2 !   19.8   0.1   5.9e-07   0.00056     228     297 ..     136     203 ..     103     204 .. 0.84
   3 ?   -3.2   0.1       6.1   5.8e+03     268     279 ..     264     275 ..     264     276 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 5.9e-07
      AAA_21  2 nvliGpNgsGKSnLLdaldl 21
                ++++G+Ng+GKS+LL++l++
  CCD26093.2 36 TLVVGANGAGKSTLLKLLSG 55
                799**************975 PP

  == domain 2  score: 19.8 bits;  conditional E-value: 5.9e-07
      AAA_21 228 dgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsr.ngaQviltTH 297
                  + ++ ++ lSdG+kr   l+  ll      ++ll+DE+   L+  + +rll++lk +++ ++  vi +TH
  CCD26093.2 136 IDTNWRMHRLSDGQKRRVQLAMGLLKPW---KVLLLDEVTVDLDVIARSRLLQFLKWETEtRKCSVIYATH 203
                 46789999*********9*******877...9***********************55555568******** PP

  == domain 3  score: -3.2 bits;  conditional E-value: 6.1
      AAA_21 268 ngLHPkllrrll 279
                 n+LHP +l+ l 
  CCD26093.2 264 NSLHPLALAWLR 275
                 89***9988775 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00026      0.25      20      42 ..      30      51 ..      22      57 .. 0.80
   2 !   14.6   0.0   1.8e-05     0.017     133     196 ..     141     202 ..      76     223 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00026
                EETTSSEEEEEESTTSSHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 20 lpfsksftaivGpNGSGKsnlld 42
                +p++k  t +vG+NG+GKs ll 
  CCD26093.2 30 IPWNK-RTLVVGANGAGKSTLLK 51
                55555.799**********9975 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 1.8e-05
                 STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTT..SEEEEE- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxx RF
       SMC_N 133 skelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkekskn..aQfivis 196
                  ++ LS G+k  v la+       kp  + llDe+   LD   ++++ ++lk ++++  + +i  +
  CCD26093.2 141 RMHRLSDGQKRRVQLAMG----LLKPWKVLLLDEVTVDLDVIARSRLLQFLKWETETrkCSVIYAT 202
                 344899999998887765....699***************************65554114455444 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.7e-06    0.0016      22      39 ..      33      50 ..      23      61 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 1.7e-06
      AAA_29 22 kgatlltGpsGsGKSTll 39
                +  tl++G++G+GKSTll
  CCD26093.2 33 NKRTLVVGANGAGKSTLL 50
                3469*************8 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     3e-06    0.0028      18      76 ..      29      88 ..      24     159 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 3e-06
      AAA_15 18 eidlseeltvliGkNnsGKSsileald...lFlnnkekknkkvikiekedleifeniseskd 76
                +i+ ++  t+++G+N++GKS++l++l    l ln k + n   + +   +++++e +se+kd
  CCD26093.2 29 QIPWNK-RTLVVGANGAGKSTLLKLLSgkhLCLNGKIRVN-GLDPFSPLSMHQEEVNSEEKD 88
                556666.9*****************932223344443333.334444444444444444444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   4.9e-06    0.0046      22      47 ..      36      64 ..      24     156 .. 0.79
   2 ?   -3.1   0.1       9.8   9.2e+03      57      84 ..     227     254 ..     219     265 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 4.9e-06
      AAA_23 22 tlItGpNGaGKTTildAik...laLyget 47
                tl++G NGaGK+T+l  +    l+L g+ 
  CCD26093.2 36 TLVVGANGAGKSTLLKLLSgkhLCLNGKI 64
                89*************98865556777765 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 9.8
      AAA_23  57 gfeksdveiesegkvkayveltfenkdg 84 
                  + + dve+ +e ++++  ++tf + ++
  CCD26093.2 227 LNYTKDVEFCNEIDGNTNGHVTFHSSTN 254
                 5557778888886666666666655554 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.2e-05     0.011      90     125 ..      23      59 ..       2      93 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
                  HHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase  90 leelkellkd.ktsvlvGqSGvGKStLinallpelel 125
                  + ++k ++   k +++vG  G+GKStL++ l +++  
   CCD26093.2  23 VIDIKLQIPWnKRTLVVGANGAGKSTLLKLLSGKHLC 59 
                  4444444443388999***************998544 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   2.2e-05     0.021       2     113 ..      37     148 ..      37     156 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.2e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf.....gvnlrdvakenglllevdpealdeskrldedkldklldaleenssaleegknlvidghlaeleseaakdik 95 
                 l+ G+ G+GK+tl k Ls ++ +      vn  d ++   +  e+ +   +e++  ++ +l      +  +  +++ g   +++++  ++++e+  ++ 
  CCD26093.2  37 LVVGANGAGKSTLLKLLSGKHLClngkiRVNGLDPFSPLSMHQEEVNS--EEKDWQVTTYLGTEWCHMSII--NRDIGVLELLESIGLNHFKERGEKLI 131
                 589**************8886346553333333333333333333333..555555555544444444444..46888888999999999999999988 PP

      AAA_18  96 kvvLtaspeelleRlekR 113
                   +L+ +++ ++ Rl++ 
  CCD26093.2 132 -EILDIDTNWRMHRLSDG 148
                 .89999999999999875 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.3e-05     0.059       3      23 ..      37      58 ..      35     151 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.3e-05
                EEEESTTSSHHHHHHHHHTS.T CS
    MMR_HSR1  3 aivGrpNvGKStLinaltge.k 23
                ++vG   +GKStL++ l+g+  
  CCD26093.2 37 LVVGANGAGKSTLLKLLSGKhL 58
                79***************99631 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   7.6e-05     0.072       2      29 ..      37      64 ..      36      94 .. 0.89

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 7.6e-05
                EEEEBTTTTHHHHHHHHHTS--S---SS CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlgedilprgpn 29
                +vvG+  +GKS++l  L g+++  +g++
  CCD26093.2 37 LVVGANGAGKSTLLKLLSGKHLCLNGKI 64
                59******************99887765 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2    0.0015       1.4       2     114 ..      37     207 ..      36     211 .. 0.56
   2 ?   -2.9   0.0       9.3   8.8e+03      89     112 ..     235     256 ..     233     261 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0015
                 EEESSTTSSHHHHHHHHHHH...H.......T...HEEEEEETTTCSSS.................................................. CS
         AAA   2 llyGppGtGKTllakavake...l.......g...vefleisgsellsk.................................................. 37 
                 l++G  G GK++l k +  +   l       g   ++ l++   e+ s+                                                  
  CCD26093.2  37 LVVGANGAGKSTLLKLLSGKhlcLngkirvnGldpFSPLSMHQEEVNSEekdwqvttylgtewchmsiinrdigvlellesiglnhfkergeklieild 135
                 788999999999999998885441322222102122233333333332255666666666666666666667777777777777755555555555555 PP

                 .....STTHHHHHHHHHHHHHHHTS........TS.EEEEEETG....GGHHHHHTTCCCHHHHHHHHHHHHHHHHTTTSSSTEEEEEEESSGGG CS
         AAA  38 .....yvgesekkirelfkeakeka........kp.silfiDEi....dalaksrsgseseeeervvnqLlteldgvkkkeskvivigatnrpdk 114
                       +   ++  +         +        kp ++l++DE+    d +a+sr              Ll++l+++++  +k+ vi at+  d 
  CCD26093.2 136 idtnwRMHRLSDGQKR--------RvqlamgllKPwKVLLLDEVtvdlDVIARSR--------------LLQFLKWETET-RKCSVIYATHIFDG 207
                 4444312222222222........0333344557889999998633336666666..............88888888885.66999999987765 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 9.3
                 HHHHHHHTTTSSSTEEEEEEESSG CS
         AAA  89 Llteldgvkkkeskvivigatnrp 112
                 + +e+dg ++  ++v++   tn+p
  CCD26093.2 235 FCNEIDGNTN--GHVTFHSSTNQP 256
                 6788999988..468888888886 PP

>> DUF3584  Protein of unknown function (DUF3584)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   8.9e-05     0.084      17      37 ..      33      53 ..      26      54 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 8.9e-05
     DUF3584 17 dghtnieGtNaaGKTtLlrLi 37
                + +t ++G+N+aGK tLl+L+
  CCD26093.2 33 NKRTLVVGANGAGKSTLLKLL 53
                679****************97 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00013      0.12      36      58 ..      30      52 ..       3      54 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00013
                  GGS-.SEEEE--TTSSHHHHHHH CS
  FtsK_SpoIIIE 36 kkmashllvaGatgsGKStalnt 58
                  +++   +lv+Ga g GKSt l+ 
    CCD26093.2 30 IPWNKRTLVVGANGAGKSTLLKL 52
                  2334689************9975 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002      0.19      26      44 ..      33      51 ..      23      58 .. 0.79

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0002
      AAA_27 26 adlhliyGpNEAGKstalr 44
                ++ +l++G+N AGKst+l+
  CCD26093.2 33 NKRTLVVGANGAGKSTLLK 51
                55579***********997 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00028      0.26       3      30 ..      34      61 ..      33      94 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00028
      AAA_24  3 lkiliyGpsgiGKTtlakelgpkplfid 30
                ++ l++G +g+GK+tl+k l  k l+++
  CCD26093.2 34 KRTLVVGANGAGKSTLLKLLSGKHLCLN 61
                7899***************988888876 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   0.00024      0.23      27      62 ..      36      66 ..      31     188 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00024
      AAA_16 27 vllsGesGvGKsslvrellralekdggiflrgkcdq 62
                +l++G+ G GKs+l++ l      +  ++l+gk + 
  CCD26093.2 36 TLVVGANGAGKSTLLKLLSG----K-HLCLNGKIRV 66
                79*************88872....1.3445555555 PP

>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.049        47       2      16 ..      37      51 ..      36      58 .. 0.89
   2 ?    5.8   0.0     0.013        12     107     154 ..     191     240 ..     165     251 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.049
                EEE-STTSSHHHHHH CS
      MutS_V  2 litGpnmaGkstylr 16
                l+ G+n aGkst+l+
  CCD26093.2 37 LVVGANGAGKSTLLK 51
                799**********98 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.013
                 HHTT--EEEEEES-GG.GGGHHHHSTTEEEEEEEEE.EETTEEEEEEEEE CS
      MutS_V 107 lekikaktlfatHyhe.ltklaekleevknlhlavk.eeeedivflykvk 154
                 +e+ k+ +++atH ++ l+k  +k+ +vk  ++  + + ++d+ f  ++ 
  CCD26093.2 191 TETRKCSVIYATHIFDgLAKWPDKVIHVKDGRIVSQlNYTKDVEFCNEID 240
                 57889********654499****999999887766625568888887775 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00025      0.24      19      41 ..      36      58 ..      31      97 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00025
  Zeta_toxin 19 illgGqpGAGKselaellkdele 41
                 l++G+ GAGKs+l++ll  ++ 
  CCD26093.2 36 TLVVGANGAGKSTLLKLLSGKHL 58
                689**************998875 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00037      0.35       4      60 ..      36      92 ..      33     113 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00037
                EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEEESTSSTTHHHHHHHHHHHTTEEEE CS
       SRP54  4 illvGlqGaGKTttlaKLaallkkegkkvllvaaDtfRaaAveQLktlaeklgvpvi 60
                +l+vG +GaGK t l  L+ +    + k+ +  +D f +  + Q +++ e+ + +v+
  CCD26093.2 36 TLVVGANGAGKSTLLKLLSGKHLCLNGKIRVNGLDPFSPLSMHQEEVNSEEKDWQVT 92
                79*************999999999999999999999999999998888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       412  (0.0229795); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        84  (0.00468515); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2083.32
//
Query:       CCD26094.2  [L=519]
Description: hypothetical protein NDAI_0G03170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-12   46.4  12.4    2.4e-11   43.7  12.4    2.2  1  RabGAP-TBC      Rab-GTPase-TBC domain
  ------ inclusion threshold ------
      0.086   12.8   0.0       0.21   11.6   0.0    1.6  1  NTase_sub_bind  Nucleotidyltransferase substrate binding prot


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7  12.4   2.7e-15   2.4e-11       3     213 ..      79     330 ..      77     333 .. 0.75

  Alignments for each domain:
  == domain 1  score: 43.7 bits;  conditional E-value: 2.7e-15
  RabGAP-TBC   3 lRgevWklllgyepevkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpesesfknkqgqnqLeriLkays....iynpevgYcqGmndiv 97 
                 lR e+W++ll            +   +++e+++ +l + +++k+++q+++Dv+r+f      k++ +++ L+ iL+          p+++Y qG +d+v
  CCD26094.2  79 LRREAWRQLLYE----------QLTIYDDEDKDPELLSVKQHKDENQVMLDVKRSFG---TLKDERLKERLRDILYSTIvkvlRKYPQLNYYQGYHDLV 164
                 899******966..........4567778888888888888999*************...667777777777777765411115678************ PP

  RabGAP-TBC  98 apll.............................................lvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpk 151
                 ++++                                                 dee+ F c  ++    +lrd++ + l+    +l+++ +l++  d +
  CCD26094.2 165 SVFImvfiesypfvkttsfltpldarirgdtdpiqntdtqtsssgiskdNKIVDEEQLFGCVERFT-LLYLRDFMMNCLDFSLDQLQIIPQLMRMMDID 262
                 ****77777777777777777777777777777777777777777666533336666********9.99**********9999999************* PP

  RabGAP-TBC 152 lykhlkeegldlelfaikwfltlflrefpl.e......tvlrlwDlllegekf.vllrvalailklleee 213
                 l+++l+  ++ + +fai+ +lt+f+++++  e      t++ ++Dl++ ++++ v l++++ i+ l +++
  CCD26094.2 263 LFSKLHFDSI-NPFFAISAILTIFSHDLKPwEdgssngTIFQIFDLVISKQSMlVPLFIYANII-LEKKQ 330
                 *****99888.788***********888643422222256779996665554403344444455.33344 PP

>> NTase_sub_bind  Nucleotidyltransferase substrate binding protein like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.3e-05      0.21      35      87 ..     341     397 ..     335     401 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 2.3e-05
                     HHHHHHHHHHHHHHHHHHHHHTSSSCCTTT....HHHHHHHHHTTS-S-HHHHHHHH CS
  NTase_sub_bind  35 qrFEftyElawkllkryleeegisaeavsp....rdliReaaeagliedgevwleml 87 
                     ++FE t++l + +++++l + +++++++++    r++++ + ++ +i+d + w +++
      CCD26094.2 341 DNFENTVDLVHGIIQQVLMIPSSNDNDADDnkfwRKILKISQDMSIIDDYNGWQTII 397
                     58******************8887777777799********************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       716  (0.0399353); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.29s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3773.76
//
Query:       CCD26095.2  [L=477]
Description: hypothetical protein NDAI_0G03180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.2e-90  301.3  23.0    7.5e-90  301.0  23.0    1.1  1  STE2             Fungal pheromone mating factor STE2 GPCR
  ------ inclusion threshold ------
       0.13   12.1   6.8       0.27   11.0   2.5    2.7  2  DUF2976          Protein of unknown function (DUF2976)
       0.27   11.1   7.4       0.14   12.0   3.3    2.4  2  Mannosyl_trans4  DolP-mannose mannosyltransferase
       0.51   10.2   6.0        2.4    8.1   0.3    2.8  3  DUF412           Protein of unknown function, DUF412


Domain annotation for each model (and alignments):
>> STE2  Fungal pheromone mating factor STE2 GPCR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.0  23.0   1.7e-93   7.5e-90       1     279 [.      19     298 ..      19     299 .. 0.98

  Alignments for each domain:
  == domain 1  score: 301.0 bits;  conditional E-value: 1.7e-93
                 XXXXXXXXXXXXXX-----S-THHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHT--S.---HHHHHHHHHHHHHHHHHHHHHHHHHHH-S--XXX CS
        STE2   1 fdplnqtitltspdgtevevsfaeldefvkesiktaivyGvqiGaclvlllvlllltskekrkspifilnvlaLllniirslllllyltsplsslyvlf 99 
                 ++p ++ i++ts++g+++ vsf+e++++v+++i+ ai++Gv++Ga  +l++++++++sk+k k+pifi+n+++L+l++++s+l++ yl+s++ss+++++
  CCD26095.2  19 YNPGQSLISYTSIYGNDTVVSFDEVQTIVDKKITEAIMFGVRCGAV-ILTIIVMWMISKKK-KTPIFIINQISLFLILLHSALYFRYLLSNYSSVTYAL 115
                 79*******************************************9.************99.************************************* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXX CS
        STE2 100 tgdysrvsrsdlavsvaanvlsvllvalieasLvlQvrvvf..stlpkllrvvltalsallalvtvgfrlalavlniraileaeetsssswleslslil 196
                 tg+++ ++r d++++ aa++++vllva+ie+sLv+Qv+v+f  +++ k++++v++++s++l+l+tv++++++a++ +++++ ++   ++ +++++++il
  CCD26095.2 116 TGFPQFIHRGDVHIYGAASIIQVLLVASIETSLVFQVKVIFtgDNF-KRIGRVVMGISIALGLATVAMYFVAAIKGMISTY-NNVGGTQPKYFNVATIL 212
                 ******************************************9999.899*******************************.668889999******** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHHHHHHHHTTXX...XXXXXXXXXXXXXXXXXXXXXXXXX CS
        STE2 197 favsInffslifvvKLvlairtrrklglkqfgpmqvllimscqtliiPsifaileyav...ksndelasltltlVvlsLPLsslwA 279
                 +a+sInf++li+v+KL+lair+rr+lglkqf+++++llimscq+l+ Psi++il+y+    + +d l++++++lVvlsLPLss+wA
  CCD26095.2 213 LASSINFMTLILVIKLILAIRSRRFLGLKQFDSFHILLIMSCQSLLAPSILFILAYSLnpnDGTDVLVTVATLLVVLSLPLSSMWA 298
                 **********************************************************885459********************** PP

>> DUF2976  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1     0.038   1.7e+02      49      84 ..      38      76 ..      22      80 .. 0.65
   2 ?   11.0   2.5   6.1e-05      0.27      14      71 ..     158     215 ..     154     232 .. 0.78

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.038
     DUF2976 49 kkfneise.gkaewgkfgltlv.vGvv.llvvviwLltk 84
                 +f e+++  +++ ++ +++ v  G+v l ++v+w++ k
  CCD26095.2 38 VSFDEVQTiVDKKITEAIMFGVrCGAViLTIIVMWMISK 76
                566666332455666666665535555055778999876 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 6.1e-05
     DUF2976  14 gdllelikgylkdgvillgLvlaavaflaVakaalkkfneisegkaewgkfgltlvvG 71 
                 gd ++ i  ++  + i lgL+ +a+ f+a +k +++++n++   + ++ +++++l+  
  CCD26095.2 158 GDNFKRIGRVVMGISIALGLATVAMYFVAAIKGMISTYNNVGGTQPKYFNVATILLAS 215
                 677888999999999**************************88888887777766543 PP

>> Mannosyl_trans4  DolP-mannose mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.24   1.1e+03     119     143 ..      55      79 ..      42      89 .. 0.76
   2 ?   12.0   3.3     3e-05      0.14      14      92 ..     110     195 ..     106     218 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.24
  Mannosyl_trans4 119 asaGsWqsgiifallvvGlavqrks 143
                      +  G+   ++i++++v+ +++++k+
       CCD26095.2  55 IMFGVRCGAVILTIIVMWMISKKKK 79 
                      5556666778888888888888775 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3e-05
  Mannosyl_trans4  14 PlsfeiaavlallsgGdmyvlhtlsvvltilaaialvllvsliaseitGddia...allaGlal....lvlPelfllavaGvkaky 92 
                       +++++++   ++  Gd+++  + s++ ++l+a + + lv  + +  tGd++     ++ G+++     ++   f+ a++G+ + y
       CCD26095.2 110 SVTYALTGFPQFIHRGDVHIYGAASIIQVLLVASIETSLVFQVKVIFTGDNFKrigRVVMGISIalglATVAMYFVAAIKGMISTY 195
                      5899**********************************************985111345555531111456666666666665555 PP

>> DUF412  Protein of unknown function, DUF412
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.4    0.0085        38      25      74 ..      46      95 ..      34     107 .. 0.76
   2 ?   -2.3   0.0      0.81   3.6e+03     116     129 ..     200     213 ..     175     231 .. 0.73
   3 ?    8.1   0.3   0.00053       2.4      38      80 ..     255     297 ..     241     306 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.0085
      DUF412 25 fpenrvikatrfaikvmpalavltlvlqlylagsealpqailtalfllsL 74
                + ++++++a+ f++++  ++ ++++++ +  ++++ +     ++lfl+ L
  CCD26095.2 46 IVDKKITEAIMFGVRCGAVILTIIVMWMISKKKKTPIFIINQISLFLILL 95
                57999***********9999999999988877755333333456666655 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.81
      DUF412 116 kekptyqdLaelLk 129
                  ++p+y + a++L 
  CCD26095.2 200 GTQPKYFNVATILL 213
                 56777777777764 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.00053
      DUF412  38 ikvmpalavltlvlqlylagsealpqailtalfllsLPlQGly 80 
                 ++++ + ++++l+ +l  ++++ + ++++t l++lsLPl  ++
  CCD26095.2 255 QSLLAPSILFILAYSLNPNDGTDVLVTVATLLVVLSLPLSSMW 297
                 5567778899999999999999*****************8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       950  (0.0529868); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 3328.72
//
Query:       CCD26096.2  [L=1052]
Description: hypothetical protein NDAI_0G03190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-95  318.8   0.0    3.7e-95  318.0   0.0    1.4  1  PGAP1          PGAP1-like protein
     0.0011   19.7   0.0     0.0018   18.9   0.0    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
  ------ inclusion threshold ------
      0.029   14.0   0.0       0.12   12.0   0.0    1.8  2  Abhydrolase_1  alpha/beta hydrolase fold
      0.044   13.6   0.0      0.082   12.7   0.0    1.5  1  Palm_thioest   Palmitoyl protein thioesterase
       0.12   12.2   0.0       0.24   11.1   0.0    1.5  1  Abhydrolase_5  Alpha/beta hydrolase family
       0.19   10.9   0.0       0.35   10.1   0.0    1.4  1  Hydrolase_4    Serine aminopeptidase, S33


Domain annotation for each model (and alignments):
>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.0   0.0   1.2e-98   3.7e-95       2     230 ..     142     377 ..     141     378 .. 0.98

  Alignments for each domain:
  == domain 1  score: 318.0 bits;  conditional E-value: 1.2e-98
       PGAP1   2 lsGipVlFvpGnagsykqvrslAseaaeayqelrkllknqnkkeldfftvdfneelsaldGrtlldqaeylndaIkyIlsly.....sssekeptsvil 95 
                 l+GipVlF+pGnags++qvrs+As++a++y++  ++++++n+k+ldff++dfne+++a++G+t+ldqaeylndaI+yIl+ly      + ++ p+sv++
  CCD26096.2 142 LDGIPVLFIPGNAGSFRQVRSIASACANKYFDSPNEIMKENAKNLDFFAADFNEDYTAFHGGTMLDQAEYLNDAIRYILELYeqtngFDGRPIPKSVLI 240
                 89********************************************************************************77776678899****** PP

       PGAP1  96 iGHSmGGivaraaltlknyikqsvntiltlasPhalpplsfdkdilklyervnefwkkeleekek..lenvllvsitggirdsmvpaeyssleelvpst 192
                 +GHSmGG+var++ tl+n+i++s+n+i+tl++Ph ++p++fd+dilk+y+++n++w++++++k++   ++v+l+sitggi d+++pa+y+++++l+p++
  CCD26096.2 241 LGHSMGGMVARVMPTLRNHIHGSINSIITLSTPHGAAPVTFDGDILKIYKKTNDYWRAQYADKDSffSKHVSLISITGGILDTVLPADYAMVSDLIPPE 339
                 ****************************************************************9999******************************* PP

       PGAP1 193 nglsvattsipkvwlsidhlaivwckqlrrvvaralle 230
                 ng++++tt+ip vw++idhlaivwckqlr+v+a +lle
  CCD26096.2 340 NGFTTFTTTIPGVWTPIDHLAIVWCKQLREVIATLLLE 377
                 ***********************************997 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.9e-07    0.0018       1     139 [.     147     311 ..     147     399 .. 0.52

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 5.9e-07
                    EEEE--GC.....GC.HHHHHHHHCCTCEEEEE--TTS...T.......S-GGCS--HHH.....CHHHHHHHCCTT..............TTSE. CS
  Abhydrolase_6   1 vlllHGagssassWl.vapLaallaagvhvlapDlpGh...G.......rsdpppldled.....ladlaalldelaa............gggpv. 67 
                    vl+++G     +s++ v+++a + a  +    +D p+            ++ +   d+++      +d+a++l++ +             +g+p+ 
     CCD26096.2 147 VLFIPGNA---GSFRqVRSIASACANKY----FDSPNEimkEnaknldfFAADFNEDYTAfhggtMLDQAEYLNDAIRyilelyeqtngfDGRPIp 235
                    68888844...33855778888888886....7777443321122111111111122222222222444444444433455555567789455555 PP

                    ...EEEEETCHHHHHHHHHHCC...........EEEEES-..----TTTS----TTHHHHHHTT-CCCCHCCHS-HSCCCCHHH CS
  Abhydrolase_6  68 ...vlvGHSlGGalalaaapla.........lvvgvlldppptalpagllaaalelllallallrllawlsreplprlfladed 139
                        ++GHS+GG++a      +         +++ + l++p +a+p ++  ++l+++++ ++  r+      +++ ++f+++  
     CCD26096.2 236 ksvLILGHSMGGMVARV---MPtlrnhihgsINSIITLSTPHGAAPVTFDGDILKIYKKTNDYWRA-----QYADKDSFFSKHV 311
                    55499********7777...4455565466444449999988999999999999999988885544.....3223334444322 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.49   1.5e+03       3     110 ..     147     172 ..     145     207 .. 0.62
   2 ?   12.0   0.0   3.9e-05      0.12      73     132 ..     236     297 ..     233     305 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.49
                    EEEE-STTTCGGGGTTGHHHHHHHHTTSEEEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHHHHHHHGGGE CS
  Abhydrolase_1   3 lvilhGlpgssdvwaerglapaLakdgfdvillDlrGvgySspapacinddygtasvaddldrildalgddkltlvGhSmGGmialayaaeyperV 98 
                    +++++G +gs+   +   +a+a+a                                                                        
     CCD26096.2 147 VLFIPGNAGSFRQVRS--IASACAN----------------------------------------------------------------------- 169
                    6666666666655555..5555544....................................................................... PP

                    EEEEEESECSSC CS
  Abhydrolase_1  99 kalvllgaidpa 110
                              ++
     CCD26096.2 170 ---------KYF 172
                    .........333 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 3.9e-05
                    SSEEEEEETHHHHHHHHHHHHH...GGGEEEEEEESECSSCCHHHHHHHHHHHHHHCHHCHHH CS
  Abhydrolase_1  73 dkltlvGhSmGGmialayaaey...perVkalvllgaidpaaslieaqrqqaksfpdffdgya 132
                    +++ ++GhSmGGm+a+ +  +      +++++++l++ +  a++   +  ++k + +++d ++
     CCD26096.2 236 KSVLILGHSMGGMVARVMPTLRnhiHGSINSIITLST-PHGAAPVTFDGDILKIYKKTNDYWR 297
                    56779*************98887898999****9999.6666666666677766666666554 PP

>> Palm_thioest  Palmitoyl protein thioesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   2.7e-05     0.082      29     104 ..     182     275 ..     146     329 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 2.7e-05
  Palm_thioest  29 yvknve.igeseaedrkasffgnlndqvea..........vckk........lelangfhaiGfSQGglflRaliercddkkn.vrnlislggpqa 104
                    +kn++ ++++ +ed  a   g++ dq+e                          ++ + ++G+S Gg+++R +    ++ +  ++++i+l++p+ 
    CCD26096.2 182 NAKNLDfFAADFNEDYTAFHGGTMLDQAEYlndairyileL--YeqtngfdgRPIPKSVLILGHSMGGMVARVMPTLRNHIHGsINSIITLSTPHG 275
                   34444444555556666666677777777755555554442..0447788884478999**************99999888889**********96 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   8.1e-05      0.24      58     138 ..     237     319 ..     224     323 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 8.1e-05
  Abhydrolase_5  58 kfvvgGhslGGvvasrfaa....eeekiegvvflasYPekdelselskkvlsivgteDgvlnvkslekakkflpkdtkvvsieGg 138
                      ++ Ghs+GG+va  + +     +++i++++ l s P+     ++  ++l i+ ++++     ++  +  f++k+  ++si Gg
     CCD26096.2 237 SVLILGHSMGGMVARVMPTlrnhIHGSINSIITL-STPHGAAPVTFDGDILKIYKKTNDYWRA-QYADKDSFFSKHVSLISITGG 319
                    45789******99877765432233578888887.66998889999********999988765.67778899**********998 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00012      0.35      76      96 ..     236     256 ..     201     309 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00012
  Hydrolase_4  76 lplfllGhSmGGliallyllr 96 
                  + + +lGhSmGG++a  + + 
   CCD26096.2 236 KSVLILGHSMGGMVARVMPTL 256
                  2789********998765533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1052 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       808  (0.0450667); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.30s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 6758.74
//
Query:       CCD26097.2  [L=814]
Description: hypothetical protein NDAI_0G03200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-25   89.3   4.5    3.3e-25   89.3   4.5    3.7  4  EPL1      Enhancer of polycomb-like


Domain annotation for each model (and alignments):
>> EPL1  Enhancer of polycomb-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   1.5      0.87   1.6e+04      32      39 ..      16      23 ..       3      32 .. 0.33
   2 !   89.3   4.5   1.8e-29   3.3e-25       1     156 [.      36     181 ..      36     182 .. 0.81
   3 ?   -6.5  13.5         1   1.8e+04      46      88 ..     437     492 ..     400     661 .. 0.65
   4 ?   -2.9   0.1      0.42   7.6e+03      35      48 ..     759     772 ..     735     807 .. 0.56

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.87
        EPL1 32 seknsnke 39
                ++ n+nk+
  CCD26097.2 16 NNVNNNKN 23
                11111111 PP

  == domain 2  score: 89.3 bits;  conditional E-value: 1.8e-29
        EPL1   1 rqprldikkkLkviseeevdgldeseseeeiseknsnkensqqavetgvdkkeenekh.q.viaaakkkesssasskeslkkeelkLpkP......... 88 
                 r++++++k++L++++  ++ +lde+e +    ++   +     +vetgv+k+ee+e+h + +++  +++          ++++++++p+P         
  CCD26097.2  36 RHRKISVKQQLRIYKHTDIRNLDEDELQ----QR---E---VADVETGVEKSEEKEVHlHhILQLGSSQI---------NSVKKKYIPTPdaslkwkdy 115
                 89***************88888855333....22...2...245899**********9665555544333.........345668*********66666 PP

        EPL1  89 ......sfreferppssyirfsekseeelddeveYdMDEeDekWLeelnekrkkegvekisediFEivmdrlEk 156
                       +f e    p+syi fs+++e+++  +++Y+MDE+De +L+++ ++  ke+ ek+sed+FEi+++++E+
  CCD26097.2 116 aqfyvgKFSE----PKSYIEFSATVEDCC--GASYNMDEKDENFLNDVVNN--KENAEKLSEDEFEILCTCFEN 181
                 6555555555....***************..****************9999..5668****************6 PP

  == domain 3  score: -6.5 bits;  conditional E-value: 1
        EPL1  46 etgvdkkeen..............ekhqviaaakkkesssasskeslkkeelkLpkP 88 
                 ++g++ ++++              e +q++++++ ++++++++++ ++  +++++ P
  CCD26097.2 437 KSGQKLTKQQllllraqknadiklEDEQLLTDKQDQQHQQQKQQQ-QNGIHVYVKLP 492
                 222222222233333333333544333433333333333333322.22333333333 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 0.42
        EPL1  35 nsnkensqqavetg 48 
                 +++k n+q++++++
  CCD26097.2 759 RQQKLNNQNQIKSQ 772
                 22222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2225  (0.124101); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.77u 0.27s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 5551.67
//
Query:       CCD26098.2  [L=874]
Description: hypothetical protein NDAI_0G03210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-17   61.8   0.3    8.6e-17   61.8   0.3    6.1  6  DUF3835    Domain of unknown function (DUF3835)
    1.2e-12   47.8   0.5    1.2e-12   47.8   0.5    3.4  3  Prefoldin  Prefoldin subunit


Domain annotation for each model (and alignments):
>> DUF3835  Domain of unknown function (DUF3835)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2       1.2   1.1e+04      56      67 ..     144     155 ..     125     159 .. 0.52
   2 ?   -0.9   0.2      0.34     3e+03       2      27 ..     305     329 ..     304     362 .. 0.75
   3 !    7.8   1.0   0.00065       5.9      51      77 ..     456     482 ..     443     483 .. 0.72
   4 ?   -0.6   1.9      0.29   2.6e+03      21      57 ..     527     567 ..     510     591 .. 0.56
   5 ?   -3.3   0.1       1.9   1.7e+04       3      23 ..     760     781 ..     758     783 .. 0.51
   6 !   61.8   0.3   9.6e-21   8.6e-17       1      77 [.     785     870 ..     785     871 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.2
     DUF3835  56 eeiepidedgnp 67 
                 e  e++de+gn 
  CCD26098.2 144 EVREELDEEGNV 155
                 223445556665 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.34
     DUF3835   2 adevvErdikeaaappdpdeldeell 27 
                 +++++E +  ++a   d+++l+ee  
  CCD26098.2 305 MKQIMELRN-SRAVSSDKEDLKEEYT 329
                 678888888.5666677777877744 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00065
     DUF3835  51 kseeeeeiepidedgnpkkvSRFKAaR 77 
                 k+++ e+ e i +++ +++vSRFK  R
  CCD26098.2 456 KEQKIEQDEIIVQEKRKRRVSRFKMDR 482
                 23455555567779999*******887 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.29
     DUF3835  21 e..ldeellqrevaeeYhrlRnkliqr..qggfvkseeeee 57 
                 e  ++e++++ + + +    +  +i++  ++++ ++++e  
  CCD26098.2 527 EivVNEDIVENDLEGNDEVVKDYIIEKviEDEIIENNNEAM 567
                 35566666666666665555555555555555544444443 PP

  == domain 5  score: -3.3 bits;  conditional E-value: 1.9
     DUF3835   3 devvErdikeaaap.pdpdeld 23 
                 + +vE++++++++   +++e+d
  CCD26098.2 760 NPIVEKNVNGNKEDrLAEKEVD 781
                 5688888844333322344444 PP

  == domain 6  score: 61.8 bits;  conditional E-value: 9.6e-21
     DUF3835   1 ladevvErdi..keaaappdpde...ldeellqrevaeeYhrlRnkliqr...qggf.vkseeeeeiepidedgnpkkvSRFKAaR 77 
                 ++ +v+E+di  +++++ +d d    l++e+l++++++eY+rl+++l+++   +g++  + +e +e+epide+gn +k+S+FK++R
  CCD26098.2 785 MMVDVIEHDIpdDYSSDGDDSDAdfgLQQEKLHESISIEYQRLKEQLLSKmesEGKVnIRWNEPQELEPIDEFGNLVKTSKFKSQR 870
                 789*******7533333344333689************************87666654445************************9 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.5   1.4e-16   1.2e-12       2     110 ..      13     119 ..      12     123 .. 0.89
   2 ?   -1.5   0.1      0.26   2.3e+03      82     101 ..     593     612 ..     585     632 .. 0.60
   3 ?   -1.0   0.0      0.17   1.5e+03      94     110 ..     740     756 ..     727     767 .. 0.70

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 1.4e-16
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT.-TT-EEEEEEETTEEEEEE-.-STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin   2 keeleslqaelaqlkeaieelektletlktlkkedegkevlvplgaglyvkaev.kdtdkvlvdlGagyyveksleeAiellkkkleelekqlekleee 99 
                 + +leslq++++ l ++ +++ +++e+l ++++     +v  + +++  + ++v ++++kv++++G++yy+eks +e ie++ +kl  +e++++++ ++
  CCD26098.2  13 NHTLESLQSKYDFLAQQRDHYLQIRERLFEVSE---RPTVSDEEKQNGVIFGDViISDNKVFLNIGYEYYIEKSRDEVIEFISDKLRLMEEAMTTFHAK 108
                 5689*****************************...5555555555666778887999***************************************** PP

                 HHHHHHHHHHH CS
   Prefoldin 100 leklkdqittl 110
                 ++++  ++++l
  CCD26098.2 109 IDEANGTLQNL 119
                 ***99998876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.26
                 HHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  82 lkkkleelekqlekleeele 101
                 + kk+++l+k + +l+++++
  CCD26098.2 593 FSKKMNSLRKPISSLKNSAN 612
                 45555555555555555443 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.17
                 HHHHHHHHHHHHHHHHH CS
   Prefoldin  94 ekleeeleklkdqittl 110
                 +++++ +e+lkd+i+++
  CCD26098.2 740 TEYNKHVEELKDEIKEF 756
                 45555666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1651  (0.0920854); expected 358.6 (0.02)
Passed bias filter:                      311  (0.0173462); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.22s 00:00:00.92 Elapsed: 00:00:00.38
# Mc/sec: 6855.81
//
Query:       CCD26099.2  [L=345]
Description: hypothetical protein NDAI_0G03220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-09   35.9   0.8    5.1e-08   33.1   0.4    2.3  2  GCR1_C        Transcriptional activator of glycolytic enzymes
  ------ inclusion threshold ------
      0.082   13.1   0.1       0.12   12.5   0.1    1.2  1  MnmE_helical  MnmE helical domain


Domain annotation for each model (and alignments):
>> GCR1_C  Transcriptional activator of glycolytic enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.12   1.1e+03       4      19 ..     207     222 ..     205     242 .. 0.81
   2 !   33.1   0.4   5.7e-12   5.1e-08      22      78 ..     260     316 ..     255     317 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.12
      GCR1_C   4 sreiktVedlwnEyke 19 
                  +++++ ++lw+Ey +
  CCD26099.2 207 IKSPSSASQLWDEYVK 222
                 577888999*****87 PP

  == domain 2  score: 33.1 bits;  conditional E-value: 5.7e-12
      GCR1_C  22 ngkpsikslekkygkrWrkdsk.esklfsrRkkiidfierlieeegitreeavkilee 78 
                 + k sik le++ g++Wr++ k +s+ ++rRkki++ ie+++++ g++ +++ +il++
  CCD26099.2 260 KRKSSIKMLEERLGSSWRNKDKnFSRQINRRKKIWKSIEEGLRD-GVPLHDCFDILDR 316
                 56889*************966669********************.9999999999986 PP

>> MnmE_helical  MnmE helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.4e-05      0.12      53     133 ..     103     278 ..      92     320 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.4e-05
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................................... RF
  MnmE_helical  53 DFpeedleelseeelaekleelkeelekllatakrgellreGik..................................................... 96 
                   DF + d ee+ e+el + l+++ke++e+++ + + +++l++G+                                                      
    CCD26099.2 103 DFNDSDAEEFPENELLNGLSAAKERIEQMIFNID-SQVLNKGAYthiqrevfdpsilclleciesfnrgtslpsvedttrrplndndvlpdedpcan 198
                   9*******************************99.89*****999*****************************************99999999999 PP

                   .......................................xxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  MnmE_helical  97 .......................................Dllkeke...ekeeeevlkiSaktgegieeLeeaike.lel 133
                                                           l+ke +   +++++  l++ +k ++ i+ Lee++ +  ++
    CCD26099.2 199 lpnygvilikspssasqlwdeyvkipselavndvvacilNLKKEIAvnsNDSTMLNLELIMKRKSSIKMLEERLGSsWRN 278
                   99999999999999999998888888888888666666644444445334444444577788888899999999773333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       479  (0.0267165); expected 358.6 (0.02)
Passed bias filter:                      307  (0.0171231); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2628.08
//
Query:       CCD26100.2  [L=499]
Description: hypothetical protein NDAI_0G03230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-91  306.2   0.0    2.1e-91  305.8   0.0    1.2  1  tRNA-synt_2d     tRNA synthetases class II core domain (F)
    2.2e-12   47.1   1.8    2.2e-12   47.1   1.8    2.4  3  PheRS_DBD3       PheRS DNA binding domain 3
    2.8e-08   33.5   0.0      2e-05   24.2   0.0    2.2  2  tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM 
    3.1e-06   27.1   2.8    1.2e-05   25.2   2.8    2.2  1  PheRS_DBD2       PheRS DNA binding domain 2
    3.9e-05   23.7   0.0    7.2e-05   22.8   0.0    1.4  1  tRNA-synt_2b     tRNA synthetase class II core domain (G, H, 
    6.1e-05   22.2   0.1     0.0016   17.5   0.0    2.7  3  tRNA-synt_2      tRNA synthetases class II (D, K and N)
     0.0063   15.8   0.1      0.041   13.1   0.0    2.0  2  tRNA-synt_His    Histidyl-tRNA synthetase


Domain annotation for each model (and alignments):
>> tRNA-synt_2d  tRNA synthetases class II core domain (F)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.8   0.0   8.1e-95   2.1e-91       2     239 ..     209     480 ..     208     488 .. 0.97

  Alignments for each domain:
  == domain 1  score: 305.8 bits;  conditional E-value: 8.1e-95
                   .-TSSCTSCTSHSB-SHHHHHHHHHHHHHHCTTCEESS.TTSEEEHHHHTSTTTSTTTSHHHCHTTSEBTCTSSS-..................... CS
  tRNA-synt_2d   2 idvtlpgkrieagklhpltkvleeikeiflelgfeeve.gpevesefynfdaLnvpqdhpaRdmqdtFylkkpeka..................... 76 
                   ++++ +g ++++g+lhpl+kv+ee+++if+++gf+e+  +++ve+ f+nfdaL vpq+hpaRd+qdtFy+k+p +a                     
    CCD26100.2 209 YNFNSQGVNVSSGALHPLNKVREEFRQIFFSMGFTEMPsNQYVETGFWNFDALYVPQQHPARDLQDTFYIKDPLTAdlpedktyisnikavhengkf 305
                   89999********************************999*********************************999********************* PP

                   ............ECESEEE-SSTHHHHHHHH...TTS-SSEEEEEEEEEEBSST-SSSB-SEEEEEEEEEEETT--HHHHHHHHHHHHHHHCTSTEE CS
  tRNA-synt_2d  77 ............veekllLRthttavqirtl...ekkkppikiisigrvfRrdavDathlaeFhqveglvvdenvsladlkgvleellkklfgaevk 158
                               + +kl+LRthtta+++r+l   +k  +p++++si+rvfR++avDathlaeFhqveg+++d n++l dl++++ee++ k+ g +  
    CCD26100.2 306 dsigyrynwkeeECQKLVLRTHTTAISARMLhdlAKDPKPTRLFSIDRVFRNEAVDATHLAEFHQVEGVLADYNITLGDLIKFMEEFFAKM-GVT-G 400
                   ***********9999****************99888999****************************************************.**9.* PP

                   EEEEECEETTEEEEEEEEEEECCSSSSEEEEEEEEEE-HHHHHHTT-.TTSEEEEEEEEHHHHHHHHHT-SSGHHHHTT.H CS
  tRNA-synt_2d 159 vrfrpsyfpftePsaevdvylvekkkkwlEllgaGmvrpevleavgideevsgfafGlGveRlamlkygieDiRelvendl 239
                   +rf+p+y+p+tePs+e++ ++ e  +kw+E++++Gm+rpe+le++g++++ +++++Gl++eR +m+ky++++iRel+ + +
    CCD26100.2 401 LRFKPTYNPYTEPSMEIFSWH-EGLGKWVEIGNSGMFRPEMLESMGLPKDLRVLGWGLSLERPTMIKYKVQNIRELLGHKV 480
                   *********************.9*****************************************************99844 PP

>> PheRS_DBD3  PheRS DNA binding domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   1.8   8.6e-16   2.2e-12       1      57 [.      70     126 ..      70     127 .. 0.86
   2 ?   -0.8   0.0      0.74   1.9e+03      15      34 ..     379     398 ..     367     399 .. 0.78
   3 ?   -3.6   0.1       5.8   1.5e+04      41      49 ..     426     432 ..     426     437 .. 0.66

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 8.6e-16
  PheRS_DBD3   1 ShEarvfaavppeggisqkelkklggdpvakiGfskAmknkWikkdkgdg.kvvrkvd 57 
                 ShE+++ + v++ g++++k+++ ++g+  +k+G+++A+k++Wi k+k+++ +v+ k +
  CCD26100.2  70 SHEMKLLSLVKELGKLQIKDVMSKMGAD-GKVGQARAFKSGWIVKNKENElEVSDKFK 126
                 9*********77444******6665656.********************999988865 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.74
  PheRS_DBD3  15 gisqkelkklggdpvakiGf 34 
                  i++ +l k +++ +ak+G+
  CCD26100.2 379 NITLGDLIKFMEEFFAKMGV 398
                 49999**999999****996 PP

  == domain 3  score: -3.6 bits;  conditional E-value: 5.8
  PheRS_DBD3  41 kWikkdkgd 49 
                 kW+++  g+
  CCD26100.2 426 KWVEI--GN 432
                 9**99..33 PP

>> tRNA_synthFbeta  Phenylalanyl tRNA synthetase beta chain CLM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0014       3.6      10      42 ..     218     250 ..     214     289 .. 0.80
   2 !   24.2   0.0   7.6e-09     2e-05      90     206 ..     340     449 ..     320     458 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0014
  tRNA_synthFbeta  10 ttegelnkeqklrrklrdllagaGlnEvitysf 42 
                      +  g+l++ +k+r++ r++  ++G++E+ +   
       CCD26100.2 218 VSSGALHPLNKVREEFRQIFFSMGFTEMPSNQY 250
                      667889*********************988665 PP

  == domain 2  score: 24.2 bits;  conditional E-value: 7.6e-09
  tRNA_synthFbeta  90 largnedvrlFEigkvflkd.seeelpeeerhlaivltgkreeeswsekaravdfydlkgivealleslgiekvefepaehpalhpgrsAeikv 182
                       +  ++  rlF i +vf+++  + +  +e +++ +vl+  +               dl +++e++++++g++ ++f+p+ +p+ +p  s+ei  
       CCD26100.2 340 AKDPKP-TRLFSIDRVFRNEaVDATHLAEFHQVEGVLADYN-----------ITLGDLIKFMEEFFAKMGVTGLRFKPTYNPYTEP--SMEIFS 419
                      444555.9************988899***************...........**********************************..577766 PP

  tRNA_synthFbeta 183 dgk......evGvlGelhpevleafdlkqr 206
                        +      e+G  G + pe+le+++l++ 
       CCD26100.2 420 WHEglgkwvEIGNSGMFRPEMLESMGLPKD 449
                      443446667******************985 PP

>> PheRS_DBD2  PheRS DNA binding domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   2.8   4.8e-09   1.2e-05       1      33 []     135     165 ..     135     165 .. 0.95

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 4.8e-09
  PheRS_DBD2   1 DeVqekLkliqeGkadelddkeknELKKRKLlq 33 
                 De++  L++i +G  + ld k+ n+LKKRKL++
  CCD26100.2 135 DETKILLQKIVDG--ETLDTKTINDLKKRKLIT 165
                 899999*******..89***************7 PP

>> tRNA-synt_2b  tRNA synthetase class II core domain (G, H, P, S and T)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.8e-08   7.2e-05       1     147 [.     312     446 ..     311     477 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 2.8e-08
                   EEEEETTSEEEEE-SSSHHHHHHHHHHHEEEB.GGSSEEEEEEEEEEBTTTSTBCTTTB-SEEEEEEEEEEESGGGHHHHHHHHHHHHHHHHHHTT. CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b   1 YkledrndreyiLkPtneetfvelirdevlrs.krLPlklyqiqtkyRdEksdsrGLlRvreFhqkdgyvfhaeaslddslrdlikaisriferlgl 96 
                   Y  ++++ ++++L+   ++  +++  d  +++ k  P +l+ i +++R+E+ d      + eFhq +g+    +      l dlik ++++f ++g+
    CCD26100.2 312 YNWKEEECQKLVLRTHTTAISARMLHDL-AKDpK--PTRLFSIDRVFRNEAVDAT---HLAEFHQVEGVLADYNI----TLGDLIKFMEEFFAKMGV 398
                   6778888899999999999999999988.66668..***************9443...478*******9865554....899**************8 PP

                   SCEEEEEEGTTSCBTTSEEEEEEEEETTTSEEEEEEEEEEEETHHHHHTTE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2b  97 efraiielmsaksadykdkkefeavsesltkgieigtiqklgtrlserlga 147
                        +   +   +  +++ e+  + e l+k +eig  +    ++ e +g+
    CCD26100.2 399 TGLRFKPTYN---PYTEPSMEIFSWHEGLGKWVEIGNSGMFRPEMLESMGL 446
                   8766665555...6799******************9887776677777766 PP

>> tRNA-synt_2  tRNA synthetases class II (D, K and N)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.33   8.4e+02      25      44 ..     226     245 ..     216     247 .. 0.83
   2 !   17.5   0.0   6.4e-07    0.0016      92     140 ..     346     395 ..     332     403 .. 0.83
   3 ?    0.7   0.0     0.087   2.2e+02     286     307 ..     454     475 ..     442     478 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.33
                  HHHHHHHHHHHHHHTT-EE- CS
                  xxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2  25 rstvtkavrkyleengfiei 44 
                   ++v + +r+++++ gf+e+
   CCD26100.2 226 LNKVREEFRQIFFSMGFTEM 245
                  5789999**********996 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 6.4e-07
                  SEEEEEEEEE--S--BTTB-S-CEEEEEEEEET..-SCHHHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
  tRNA-synt_2  92 drvfqiaraFRaEdsrtdrhlaEFtqieaemsf..ieeedimqvleeliks 140
                  +r f+i r+FR+E ++++ hlaEF q+e  ++   i+  d+++++ee++ +
   CCD26100.2 346 TRLFSIDRVFRNEAVDAT-HLAEFHQVEGVLADynITLGDLIKFMEEFFAK 395
                  589*************77.566******88854114556799999998876 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.087
                  EEEEEHHHHHHHHCT-SSGGGC CS
                  xxxxxxxxxxxxxxxxxxxxxx RF
  tRNA-synt_2 286 GlglGldRlvmlllgsesIrdv 307
                  G+gl+l+R +m+  + ++Ir++
   CCD26100.2 454 GWGLSLERPTMIKYKVQNIREL 475
                  9*******************97 PP

>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1      0.17   4.5e+02     210     257 ..      13      59 ..       2      63 .. 0.70
   2 !   13.1   0.0   1.6e-05     0.041      63     114 ..     320     371 ..     312     402 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.17
                    HCCCHHHHCHCCHCTHHHHHHHHHHHHHHHHHHHHHHH.H-TTEEE-TT CS
  tRNA-synt_His 210 gdaevleealealaaapalqaaldeleelaallealak.pevrvtlDla 257
                     + ++++  ++ ++++++ q++l++l +l a+ + l++ ++ ++ +Dl+
     CCD26100.2  13 AELNEIKSTAQVFPEKNS-QEVLAALSSLNAHSK-LNYvKSENIAYDLS 59 
                    344778888888887765.999999999999877.44567788888887 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.6e-05
                    SEEEE-SSSHHHHHHHHHHHHHTSS-EEEEEEEEEEESS-SSTT--CCEEEE CS
  tRNA-synt_His  63 rllglRaDiTpqvaRiaahrlnrerplRlcYaGsvlrtrpdglgrsreplQv 114
                    + l lR  +T+  aR+   + + ++p+Rl ++ +v+r ++ +++  +e+ Qv
     CCD26100.2 320 QKLVLRTHTTAISARMLHDLAKDPKPTRLFSIDRVFRNEAVDATHLAEFHQV 371
                    6799****************99*********************999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       611  (0.0340789); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 3796.06
//
Query:       CCD26101.2  [L=225]
Description: hypothetical protein NDAI_0G03240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.049   13.7   0.6       0.14   12.3   0.1    1.9  2  P_gingi_FimA  Major fimbrial subunit protein (FimA)


Domain annotation for each model (and alignments):
>> P_gingi_FimA  Major fimbrial subunit protein (FimA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.082   1.5e+03      88     118 ..      23      50 ..      19      69 .. 0.70
   2 ?   12.3   0.1   7.8e-06      0.14      20      62 ..      72     113 ..      57     128 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.082
                   CCTTSCHHHHHT-EEEGGGCCTT.BTTB--E CS
  P_gingi_FimA  88 daigktlgdvkalleelssdgknvtknnlpM 118
                    ai k+++d+k  l++l++d+++   +  +M
    CCD26101.2  23 HAIKKYKNDLKPDLTSLDKDQNT---KRHIM 50 
                   57788999999999999988555...33333 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 7.8e-06
                   -S-CCCTTE-SEEEEEEEETTSCCEEEEEEEEESTTCCEEEEE CS
  P_gingi_FimA  20 atttkdEakInsLtvyVFnekgelvskkkelkvsgdgseaikn 62 
                   at++ +E++In L + VF+ ++ +  + k++++++   e+i n
    CCD26101.2  72 ATASREEQDINALKATVFK-DDLFRMNDKFAASINGRVEEIPN 113
                   67888**************.77777755555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       748  (0.0417201); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1663.58
//
Query:       CCD26102.2  [L=497]
Description: hypothetical protein NDAI_0G03250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-15   56.4   4.2    3.4e-15   55.4   4.2    1.6  1  GATA            GATA zinc finger
    2.1e-07   30.7   0.5    5.1e-07   29.4   0.5    1.7  1  DUF1752         Fungal protein of unknown function (DUF1752)
  ------ inclusion threshold ------
      0.045   13.3   0.8       0.12   11.9   0.8    1.8  1  TF_Zn_Ribbon    TFIIB zinc-binding
       0.19   11.7   1.0        0.4   10.6   1.0    1.5  1  OrfB_Zn_ribbon  Putative transposase DNA-binding domain
        2.2    8.5   5.0        9.6    6.4   5.0    2.1  1  zf-piccolo      Piccolo Zn-finger


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   4.2   9.5e-19   3.4e-15       1      36 []     367     401 ..     367     401 .. 0.98

  Alignments for each domain:
  == domain 1  score: 55.4 bits;  conditional E-value: 9.5e-19
        GATA   1 CsnCgttkTplWRrgpdgnksLCnaCGlyykkkglk 36 
                 C nCgt +TplWR++p+gn  LCnaCGl+ k++g++
  CCD26102.2 367 CNNCGTGTTPLWRKDPNGNS-LCNACGLFLKLHGVM 401
                 ********************.************986 PP

>> DUF1752  Fungal protein of unknown function (DUF1752)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.5   1.4e-10   5.1e-07       1      27 [.      41      67 ..      41      68 .. 0.97

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 1.4e-10
     DUF1752  1 lWkyytkkkkdlpngeRLENlSWRlWn 27
                +Wk+y+ +k  lp+ eR+ N++WR +n
  CCD26102.2 41 IWKLYSGAKTILPYKERILNFAWRSMN 67
                7*************************9 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.8   3.3e-05      0.12       2      29 ..     366     395 ..     355     401 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.3e-05
                   EETTTTC.EE.CHEETSTTCEEESSSSBEE CS
  TF_Zn_Ribbon   2 kCPnCgs.tn.lveDpergelvCtdCGlVl 29 
                   +C nCg+ t+ l +   +g+ +C +CGl l
    CCD26102.2 366 RCNNCGTgTTpLWRKDPNGNSLCNACGLFL 395
                   7******98878777889*********966 PP

>> OrfB_Zn_ribbon  Putative transposase DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.0   0.00011       0.4      24      54 ..     360     393 ..     353     396 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00011
  OrfB_Zn_ribbon  24 payTSktCseCgsknke...alsgrtfkCpnCgf 54 
                      + TS +C++Cg   ++   ++ + +  C++Cg+
      CCD26102.2 360 DNKTSIRCNNCGTGTTPlwrKDPNGNSLCNACGL 393
                     567************99999999999******97 PP

>> zf-piccolo  Piccolo Zn-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.0    0.0027       9.6      14      53 ..     349     391 ..     338     397 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0027
  zf-piccolo  14 skeppnyntCteCkkqv.CnlCGFnptphlte..kkeWlclnC 53 
                 s+   nynt t+ k+ + Cn CG   tp   +  + + lc  C
  CCD26102.2 349 SSLMNNYNTTTDNKTSIrCNNCGTGTTPLWRKdpNGNSLCNAC 391
                 44568*********9988*****99999877755667788888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1002  (0.0558871); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.57u 0.28s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 3214.92
//
Query:       CCD26103.2  [L=76]
Description: hypothetical protein NDAI_0G03260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-18   66.4   0.1    1.4e-18   66.3   0.1    1.0  1  LSM       LSM domain


Domain annotation for each model (and alignments):
>> LSM  LSM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.1     8e-23   1.4e-18       2      65 ..       6      69 ..       5      71 .. 0.96

  Alignments for each domain:
  == domain 1  score: 66.3 bits;  conditional E-value: 8e-23
                HHHHTTTSEEEEEETTSEEEEEEEEEEETTSEEEEEEEEEEETTETEEEEEEE.EEEEGGGEEEE CS
         LSM  2 flkklinkkvtvelkngrelrGtLkgfDqfmNlvLedveetlkdkkekrklgl.vliRGnnivli 65
                 lkk+++kk++++l++ r++ G+L+g+D f+N+v++d++e++ d+ +k++lg  ++iRGn+iv +
  CCD26103.2  6 ELKKYMDKKILIQLNGSRKIAGILRGYDIFLNVVIDDAVEVSADG-SKHQLGIqTVIRGNSIVAL 69
                69*******************************************.*****988********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      259  (0.0144459); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.25s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 577.78
//
Query:       CCD26104.2  [L=156]
Description: hypothetical protein NDAI_0G03270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-14   54.2   0.1    1.7e-14   54.0   0.1    1.2  1  Acetyltransf_1   Acetyltransferase (GNAT) family
      8e-11   42.2   0.1    1.1e-10   41.8   0.1    1.3  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
    1.4e-08   34.7   0.0    1.5e-08   34.6   0.0    1.2  1  Acetyltransf_10  Acetyltransferase (GNAT) domain
  ------ inclusion threshold ------
       0.02   15.0   0.2      0.045   13.9   0.0    1.6  2  Acetyltransf_4   Acetyltransferase (GNAT) domain
      0.034   14.2   0.1       0.12   12.4   0.1    2.1  1  Acetyltransf_9   Acetyltransferase (GNAT) domain


Domain annotation for each model (and alignments):
>> Acetyltransf_1  Acetyltransferase (GNAT) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.1   4.8e-18   1.7e-14      32     117 .]      60     145 ..      12     145 .. 0.79

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 4.8e-18
                     TCEEEEEEETTEEEEEEEEEEEET...TSTTEEEEEEEEESGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTEHHHHHHHHHTTE CS
  Acetyltransf_1  32 aegllvaeedgeliGfisllkipd...ekggvayieslaVspeyrgkGlGsaLlealeerareegikkivlaveedndaairlYeklGF 117
                     +++ +v    +e+++   +   +    e g +++ie++aVs++++gk lG+aLl +l +  ++ g++ki l++   n++ +++Yek+G+
      CCD26104.2  60 NPSVIVDVNTDEVAAVGNIILEQKlihEGGICGHIEDIAVSKNHQGKKLGKALLGYLSDLGFQSGCYKIILDC---NEKNVKFYEKCGY 145
                     445555445567777776666666788999*****************************************66...6666********8 PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.1     3e-14   1.1e-10      15      75 ..      75     146 ..      47     147 .. 0.70

  Alignments for each domain:
  == domain 1  score: 41.8 bits;  conditional E-value: 3e-14
                     EEEEEEEEES.......TCTEEEEE-GGGTTSSHHHHHHHHTT.....SEEEEEEEEETHHHHHHHHHHTTEE CS
  Acetyltransf_7  15 vGfialslld.......aeitrlaVdpeyrgkGiGraLleaae.....kgiileqlelnaekaikfYeklGFe 75 
                     vG i+l+          ++i+ +aV+++++gk +G+aLl +       +g+  + l  n+ k++kfYek+G+ 
      CCD26104.2  75 VGNIILEQKLiheggicGHIEDIAVSKNHQGKKLGKALLGYLSdlgfqSGCYKIILDCNE-KNVKFYEKCGYS 146
                     5655555555666555447777*****************982244555776522223343.88********96 PP

>> Acetyltransf_10  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   4.3e-12   1.5e-08      52     112 ..      84     152 ..      29     156 .] 0.77

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 4.3e-12
  Acetyltransf_10  52 s........hisllfVdpeyrgqGigkaLleaveeeaekdgikleltvnaspyavpfYeklGFkav.gee 112
                               hi+ ++V+++++g+++gkaLl ++ +   + g   ++ ++ + + v+fYek+G+ ++  e+
       CCD26104.2  84 LiheggicgHIEDIAVSKNHQGKKLGKALLGYLSDLGFQSGCY-KIILDCNEKNVKFYEKCGYSTTaIEM 152
                      234444666***************************6455555.9******************9994444 PP

>> Acetyltransf_4  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.72   2.6e+03       1      28 [.       9      36 ..       9      71 .. 0.53
   2 ?   13.9   0.0   1.2e-05     0.045      90     141 ..     100     152 ..      92     156 .] 0.87

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.72
  Acetyltransf_4  1 iraateeDakeilaiyaeyvvntaitfe 28
                    ir ++++D +   +++a       +t+e
      CCD26104.2  9 IRRIEKKDYEGVVETLAVLTTVGNLTRE 36
                    5666666666666555432222233333 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 1.2e-05
  Acetyltransf_4  90 nkeglgrelidaleqvlkeqnienllaeiasp.nensiqfhkalGFelvgifk 141
                     +k+  g++l +al  +l+  ++++ + +i+ + ne++++f+++ G++ ++i+ 
      CCD26104.2 100 SKNHQGKKLGKALLGYLSDLGFQSGCYKIILDcNEKNVKFYEKCGYSTTAIEM 152
                     5666788999*******************9887899***********998875 PP

>> Acetyltransf_9  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.4e-05      0.12      22     126 ..      32     146 ..       8     148 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.4e-05
                     T----H..........HHHHHHHHHHTTSEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-CCGTTS-HHHHHHHHHHHHHHHTT-- CS
  Acetyltransf_9  22 qdeespl........eeireyfrklleesrvlgaedngelvgqlallplelnvpGktlkaagvtgVavapehrgrgvlskLlaraleemreegqp 108
                     + +++++          +++  + +++ +  +++  n + v+ ++ + le ++  +   ++ + ++av  +h+g+++ ++Ll ++ +   + g  
      CCD26104.2  32 NLTREQFesivdywnSVQMYHDKSIYKYNPSVIVDVNTDEVAAVGNIILEQKLIHEGGICGHIEDIAVSKNHQGKKLGKALLGYLSDLGFQSGCY 126
                     333333355444432122344455666666666655555555555555666665555569*********************99887776666666 PP

                     EEEE--..SSHHHHHTTT-E CS
  Acetyltransf_9 109 lsllfP..ssipiYrrfGye 126
                      ++l     ++++Y++ Gy+
      CCD26104.2 127 KIILDCneKNVKFYEKCGYS 146
                     66666633336677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       680  (0.0379274); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1127.69
//
Query:       CCD26105.2  [L=552]
Description: hypothetical protein NDAI_0G03280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.6e-26   90.5   5.0    1.3e-25   89.2   5.0    1.7  1  DnaJ             DnaJ domain
      6e-25   88.1   0.1      1e-24   87.3   0.1    1.4  1  DnaJ_C           DnaJ C terminal domain
    6.4e-14   52.1  16.5    1.3e-13   51.1  16.5    1.5  1  DnaJ_CXXCXGXG    DnaJ central domain
  ------ inclusion threshold ------
      0.012   15.7   7.2        0.5   10.4   1.0    2.3  2  HypA             Hydrogenase/urease nickel incorporation, met
       0.13   12.8  12.4       0.96   10.0   3.3    2.6  2  Cytochrom_c3_2   Cytochrome c3
        1.4    9.0  14.3        1.7    8.7   5.4    2.7  2  Anti-TRAP        Tryptophan RNA-binding attenuator protein in
        1.4    8.9   6.2       0.76    9.8   3.1    2.1  2  Zn_Tnp_IS1595    Transposase zinc-ribbon domain
          7    6.7   6.0        2.1    8.4   0.3    2.6  2  zf_CopZ          Zinc binding domain
          9    5.7  10.5        1.7    8.0   2.7    3.0  3  zf-TFIIB         Transcription factor zinc-finger
        9.9    6.3   9.9         28    4.8   0.8    2.3  2  DZR              Double zinc ribbon


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   5.0   7.4e-29   1.3e-25       1      63 []      79     140 ..      79     140 .. 0.99

  Alignments for each domain:
  == domain 1  score: 89.2 bits;  conditional E-value: 7.4e-29
                 HHHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ   1 dyYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63 
                 d+Y++Lgv+++as++eIkkaY+kla+kyHPD n k+p+ae+kF+ +++Aye+Lsd++kRkqYD
  CCD26105.2  79 DPYSVLGVNNSASTSEIKKAYYKLAKKYHPDIN-KQPDAEKKFHDLQNAYEILSDENKRKQYD 140
                 78*******************************.****************************9 PP

>> DnaJ_C  DnaJ C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.3   0.1   5.7e-28     1e-24       1     146 [.     224     455 ..     224     457 .. 0.90

  Alignments for each domain:
  == domain 1  score: 87.3 bits;  conditional E-value: 5.7e-28
                 EEEEEEE-HHHHHH-.EEE.EEEE..........................................................................T CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx...................................................................xxxxx RF
      DnaJ_C   1 ieveleisleelykGktkkikikrnvi...................................................................kkekk 32 
                 ie+  +++++++++G+ +++++k n++                                                                    +++k
  CCD26105.2 224 IEIVHNLNFKDAVFGV-QNVNLKFNSMdpcnkcsgsglnrnakrttcpschgsgqkvhirsgfqmvstcnhchgegtiidskdicsschgdgveLNHNK 321
                 5777899********6.4455555555569999***********************************************************9866777 PP

                 EEEEEE-TT--TT-EEEETT-SS.............SS....S---EEEEEEE---SS-E.EETTEEEEEEEEEHHHHHHTEEEEEE-S.S-EEEEEE. CS
                 xxxxxxxxxxxxxxxxxxxxxxx.............xxx..xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx. RF
      DnaJ_C  33 tlevkipaGikdgqkirlegeGd.............eeg..gepGDlivtikvkphpvFk.rkgndlyveveislaeallGgklevptl.dgkvklki. 113
                 +++v+ p G +dg+ ir++g+G+             +      +GDl+v+++v+++p+F+ r++ d++++ +i++++a+lGg +++pt+ +++++lk+ 
  CCD26105.2 322 SIDVNLPNGLQDGDVIRVPGQGNypqtgasidpammN-SikLSRGDLLVRVRVNKDPNFSiRDKYDIWFTKQIPITTAILGGVVKIPTVdGTQIRLKVs 419
                 9***********************9888777765533.26899*****************9*******999******************6667899*** PP

                 ..--TT-EEEETT-S-EET....TEE--EEEEEEEE CS
                 ..xxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
      DnaJ_C 114 ..tqpgevlrikgkGmpklk.kpgkrGdlyvevkve 146
                   t++++++ i++ G+p++  ++++rG++ v++k+ 
  CCD26105.2 420 pgTKHDQIISIPNLGVPRSSiNKDNRGNMKVQYKII 455
                 ********************9************996 PP

>> DnaJ_CXXCXGXG  DnaJ central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1  16.5   7.1e-17   1.3e-13       1      67 []     252     314 ..     252     314 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.1 bits;  conditional E-value: 7.1e-17
  DnaJ_CXXCXGXG   1 CkkCkGsgakk.gkkktCktCkGsGvvreeqktlgpfvqqsqstCpeCeGtGkvikekdkCkkCkGkg 67 
                    C+kC+Gsg ++ +k++tC++C+GsG++++ ++  g+   q+ stC++C+G+G++i++kd C++C+G+g
     CCD26105.2 252 CNKCSGSGLNRnAKRTTCPSCHGSGQKVHIRS--GF---QMVSTCNHCHGEGTIIDSKDICSSCHGDG 314
                    ********876366999********6444332..22...3568***********************86 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.5   0.00055      0.98      64     102 ..     246     284 ..     224     289 .. 0.61
   2 ?   10.4   1.0   0.00028       0.5      68     107 ..     286     325 ..     276     327 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00055
                 EEEE--EEEETTTS-EEECHHH.HHS-TTTSSS..-EEEEES CS
        HypA  64 ieevpvkvrCreCgkefeleek.alrCpkCgsa..dveivsG 102
                 +++++    C++C+ ++  +++ +++Cp+C+++  +v+i sG
  CCD26105.2 246 FNSMDP---CNKCSGSGLNRNAkRTTCPSCHGSgqKVHIRSG 284
                 333333...88887666655433789****987335666666 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00028
                 --EEEETTTS-EEECHHHHHS-TTTSSS-EEEEESSSEEE CS
        HypA  68 pvkvrCreCgkefeleekalrCpkCgsadveivsGeellv 107
                 +++ +C++C+ e+++ +++  C +C++ +ve+ + + + v
  CCD26105.2 286 QMVSTCNHCHGEGTIIDSKDICSSCHGDGVELNHNKSIDV 325
                 56789*********6654456**********999887776 PP

>> Cytochrom_c3_2  Cytochrome c3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  12.4    0.0026       4.7       8      79 ..     251     311 ..     246     312 .. 0.80
   2 ?   10.0   3.3   0.00054      0.96       7      43 ..     289     321 ..     283     333 .. 0.74

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0026
                     TGGGTSSSST-SSTTHHHHHHHHHHH--HHHCHTTSST.TSSBTTSSCTSSS-GGGTS-TTT..SBT-GGGGT- CS
  Cytochrom_c3_2   8 kCadCHtkekpkkdkaveeekClsCHgkleelakktkeakeanphkshekeleCteCHkeHk..ksekvCaeCH 79 
                      C++C ++  +   ++++ ++C sCHg+ ++++ ++           ++   +C++CH e +  +s+++C++CH
      CCD26105.2 251 PCNKCSGSGLN---RNAKRTTCPSCHGSGQKVHIRSG----------FQMVSTCNHCHGEGTiiDSKDICSSCH 311
                     58999888886...4567899*****99998877655..........577788*****9998778889*****9 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00054
                     .TGGGTSSSST-SSTTHHHHHHHHHHH--HHHCHTTS CS
  Cytochrom_c3_2   7 vkCadCHtkekpkkdkaveeekClsCHgkleelakkt 43 
                      +C++CH++ +  +    +++ C sCHg+  el++++
      CCD26105.2 289 STCNHCHGEGTIID----SKDICSSCHGDGVELNHNK 321
                     57999999988754....4567999999877776655 PP

>> Anti-TRAP  Tryptophan RNA-binding attenuator protein inhibitory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.4   0.00093       1.7      12      40 ..     251     276 ..     247     280 .. 0.87
   2 ?    4.7   1.4     0.016        29      11      42 ..     289     316 ..     279     322 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00093
                 E-TTTTTTSEETTE......E-TTTTTSS CS
   Anti-TRAP  12 kCdaCngsGkiepeeprasleCPkCsGkg 40 
                 +C++C gsG    +       CP C G g
  CCD26105.2 251 PCNKCSGSGLNRNA---KRTTCPSCHGSG 276
                 8********99999...4568*****987 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.016
                 EE-TTTTTTSEETTE......E-TTTTTSSEE CS
   Anti-TRAP  11 tkCdaCngsGkiepeeprasleCPkCsGkgli 42 
                  +C++C+g G i          C  C G g+ 
  CCD26105.2 289 STCNHCHGEGTIIDS----KDICSSCHGDGVE 316
                 58********98776....3469999999985 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.1   0.00042      0.76      18      44 ..     266     295 ..     261     297 .. 0.85
   2 ?   -1.8   0.1       1.8   3.3e+03      20      26 ..     306     312 ..     302     317 .. 0.74

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00042
  Zn_Tnp_IS1595  18 gfvCPhCgsr.kayrikt..rglfqCkeCr 44 
                    + +CP C+++ +   i++    +  C++C+
     CCD26105.2 266 RTTCPSCHGSgQKVHIRSgfQMVSTCNHCH 295
                    567********888898889999******8 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.8
  Zn_Tnp_IS1595  20 vCPhCgs 26 
                    +C  C++
     CCD26105.2 306 ICSSCHG 312
                    5777875 PP

>> zf_CopZ  Zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.3    0.0011       2.1       2      15 ..     267     280 ..     266     283 .. 0.89
   2 ?   -0.5   1.1       0.7   1.3e+03       3      16 ..     290     303 ..     288     313 .. 0.83

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0011
                 -B-TTT--B-EEE- CS
     zf_CopZ   2 kkCPvCgkkGkkVk 15 
                 ++CP+C+ +G+kV+
  CCD26105.2 267 TTCPSCHGSGQKVH 280
                 68***********8 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.7
                 B-TTT--B-EEE-H CS
     zf_CopZ   3 kCPvCgkkGkkVkl 16 
                 +C +C+ +G+ +++
  CCD26105.2 290 TCNHCHGEGTIIDS 303
                 8*******998765 PP

>> zf-TFIIB  Transcription factor zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.51   9.2e+02      20      28 ..     250     258 ..     248     263 .. 0.78
   2 ?    8.0   2.7   0.00095       1.7       2      27 ..     269     296 ..     268     297 .. 0.83
   3 ?    0.9   0.1      0.16   2.9e+02      20      27 ..     305     312 ..     304     320 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.51
    zf-TFIIB  20 dyCpqCrGv 28 
                 d C++C G 
  CCD26105.2 250 DPCNKCSGS 258
                 77****995 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00095
    zf-TFIIB   2 CPkCqdele.esergg.veidyCpqCrG 27 
                 CP+C+ + +  + r+g   + +C++C+G
  CCD26105.2 269 CPSCHGSGQkVHIRSGfQMVSTCNHCHG 296
                 ****9986636777896889*******9 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.16
    zf-TFIIB  20 dyCpqCrG 27 
                 d C +C+G
  CCD26105.2 305 DICSSCHG 312
                 78999999 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   8.3      0.36   6.5e+02      15      37 ..     252     275 ..     245     294 .. 0.71
   2 ?    4.8   0.8     0.016        28      14      42 ..     290     319 ..     280     321 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.36
         DZR  15 CseCgtk.lkavaaedrCpsCgek 37 
                 C++C  + l++ a+ ++CpsC+ +
  CCD26105.2 252 CNKCSGSgLNRNAKRTTCPSCHGS 275
                 999965559999999999999855 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.016
         DZR  14 fCseCgtklkavaaedrCpsCgek.vdpea 42 
                 +C++C  +     ++d C+sC+ + v++++
  CCD26105.2 290 TCNHCHGEGTIIDSKDICSSCHGDgVELNH 319
                 688888776666678899999876666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       833  (0.046461); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3697.41
//
Query:       CCD26106.2  [L=108]
Description: hypothetical protein NDAI_0G03290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.9e-28   98.6   6.2    2.1e-27   95.3   1.5    2.1  2  HSP9_HSP12  Heat shock protein 9/12
  ------ inclusion threshold ------
       0.06   13.9   7.2        4.2    8.0   7.2    2.6  1  YtxH        YtxH-like protein


Domain annotation for each model (and alignments):
>> HSP9_HSP12  Heat shock protein 9/12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   1.5   2.3e-31   2.1e-27       1      59 []       1      59 [.       1      59 [. 0.99
   2 !    6.0   0.2    0.0017        16      11      44 ..      65      98 ..      61     103 .. 0.73

  Alignments for each domain:
  == domain 1  score: 95.3 bits;  conditional E-value: 2.3e-31
                ---S-SSCHHHHHHHHCS--SSHCHHHHHHHHHHHHHHHHHHCS-TTCHHCCHHCCCGG CS
  HSP9_HSP12  1 MSDagRkdftdkakeevtPDsqKStlekaketvtdaaDklarklqpddqKsttQevsDk 59
                MSD+gRkdf++k++e+v+PDs+KSt+ek ketvtd++Dkla+klqp+++K+ +Q + D+
  CCD26106.2  1 MSDPGRKDFSQKIGETVKPDSEKSTWEKGKETVTDTTDKLAGKLQPEENKGLGQGINDS 59
                ********************************************************995 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0017
                HHHHHHCS--SSHCHHHHHHHHHHHHHHHHHHCS CS
  HSP9_HSP12 11 dkakeevtPDsqKStlekaketvtdaaDklarkl 44
                dka+ e   D+ K + e ak ++ da+  +++++
  CCD26106.2 65 DKANGESVADQAKDYYEGAKQKLNDAVEYVSKSV 98
                6666666678888888888888888877777666 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.2   0.00047       4.2      22      63 ..      28      98 ..       6     104 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00047
        YtxH 22 sGketRkdlkek.............................addlkekakelleeakekakekaedlkekv 63
                +Gket  d  +k                              + ++++ak+++e ak+k ++ +e ++++v
  CCD26106.2 28 KGKETVTDTTDKlagklqpeenkglgqgindsaesgkdkanGESVADQAKDYYEGAKQKLNDAVEYVSKSV 98
                66666666666676677777766666666666666666666888888888888888666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 787.94
//
Query:       CCD26107.2  [L=813]
Description: hypothetical protein NDAI_0G03300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        2.3    8.7   0.0        2.3    8.7   0.0    4.0  3  DUF4786   Domain of unknown function (DUF4786)


Domain annotation for each model (and alignments):
>> DUF4786  Domain of unknown function (DUF4786)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.5   7.8         1   1.8e+04      89      98 ..      86      95 ..      12     217 .. 0.55
   2 ?    8.7   0.0   0.00013       2.3     133     156 ..     393     416 ..     376     427 .. 0.83
   3 ?   -4.0   9.7         1   1.8e+04      65     141 ..     550     639 ..     504     646 .. 0.69

  Alignments for each domain:
  == domain 1  score: -5.5 bits;  conditional E-value: 1
     DUF4786 89 ngavlkkalk 98
                n+++++++ +
  CCD26107.2 86 NDSETTQSDE 95
                1111111111 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00013
     DUF4786 133 plkpkkvqslkkyFvfNGkPkglY 156
                 +l ++++ +  kyF +NGkP+++ 
  CCD26107.2 393 SLTKEEIWESTKYFTGNGKPGRIS 416
                 56666788889**********985 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 1
     DUF4786  65 t.............ktpfkklpipfvsnGkPsrvyqwngavlkkalkkkpkfasvlaadrnrlldiesiptwrkgkaklkkplkpkkvqs 141
                 t              ++ k  +   ++n+k s+  +  ++  ++  +++      +++ +++  +i +  + +k+  k+kk  k+ +v s
  CCD26107.2 550 TrkrklkqkniddkDDSEKLSSAMQKKNAKDSTSIHFLTNNNDEDDDTMNDTSIKTNTADDSHEKIPQETQGKKPTRKYKKNRKKRRVVS 639
                 144444445556645566666777889999999999999999999999888777777777777777777777777777777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2064  (0.115121); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.31s 00:00:01.19 Elapsed: 00:00:00.52
# Mc/sec: 4671.92
//
Query:       CCD26108.2  [L=885]
Description: hypothetical protein NDAI_0G03310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-34  117.2  18.9    7.3e-07   29.8   0.1    7.9  8  WD40         WD domain, G-beta repeat
    7.8e-19   67.3   9.7    3.7e-18   65.1   9.7    2.3  1  CDC4_D       Cell division control protein 4 dimerisation dom
    4.1e-11   42.6   0.5    1.1e-10   41.2   0.5    1.8  1  F-box-like   F-box-like
    1.2e-07   31.4   1.6    1.3e-07   31.3   0.3    1.8  2  F-box        F-box domain
    0.00022   21.5   0.5       0.43   10.9   0.0    4.4  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   9.3e-08   0.00033       3      38 .]     464     500 ..     462     500 .. 0.81
   2 !   29.8   0.1     2e-10   7.3e-07       4      38 .]     507     541 ..     505     541 .. 0.93
   3 !   24.7   0.6   8.1e-09   2.9e-05       1      38 []     545     585 ..     545     585 .. 0.82
   4 !   21.1   0.2   1.1e-07    0.0004       4      38 .]     611     644 ..     609     644 .. 0.95
   5 !   16.6   0.1     3e-06     0.011       2      38 .]     649     686 ..     648     686 .. 0.84
   6 !    8.2   0.0    0.0014       4.9       3      38 .]     712     746 ..     710     746 .. 0.74
   7 ?    2.4   0.0     0.092   3.3e+02       7      38 .]     754     786 ..     749     786 .. 0.68
   8 ?   -3.6   0.0         5   1.8e+04      13      28 ..     804     817 ..     793     822 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.3e-08
                 EEEE.EESS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrt.ltGH.ss.vtslafspdgawlasGsdDgtvriWd 38 
                 ++rt l GH +s vt+l  + + +++++G dD+ +ri+d
  CCD26108.2 464 PQRTtLLGHsTSvVTCL--QFEDDYVITGADDRQLRIYD 500
                 5555478**76667***..77888899***********8 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 2e-10
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 l++l+GH ++v++l+++ dg  + sGs D+tvr+Wd
  CCD26108.2 507 LKELSGHeGGVWALKYDEDGIIV-SGSTDRTVRVWD 541
                 6899***999************7.8*99*******9 PP

  == domain 3  score: 24.7 bits;  conditional E-value: 8.1e-09
                 TEEEEEEESS.SSEEEEEEETTSSE..EEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgaw..lasGsdDgtvriWd 38 
                 g c+++++GH s v++l    +++   +++Gs+D+t+++W+
  CCD26108.2 545 GCCTHVFKGHtSTVRCLEIVTYKNIkyIVTGSRDNTLHVWK 585
                 579*******777****855455555699***********6 PP

  == domain 4  score: 21.1 bits;  conditional E-value: 1.1e-07
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++l+GH  sv+ +  s +g+ ++sGs+D+++++Wd
  CCD26108.2 611 VGVLRGHmASVRTI--SGHGNIIISGSYDNNLMVWD 644
                 6799****99****..*******************9 PP

  == domain 5  score: 16.6 bits;  conditional E-value: 3e-06
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +c++ l GH + ++s  +++  +  +s+s+D t++iWd
  CCD26108.2 649 KCIYLLIGHtDRIYSTIYDHQRKRCISASMDSTIKIWD 686
                 799999***555*88877778888889999*******9 PP

  == domain 6  score: 8.2 bits;  conditional E-value: 0.0014
                 EEEEEESSSS.E..EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss.v..tslafspdgawlasGsdDgtvriWd 38 
                 ++ tl GH+  v    l    + ++l+s+  Dg++r Wd
  CCD26108.2 712 PMMTLQGHTAlVglLRL----SDKYLVSAAADGSLRGWD 746
                 678999**665422566....6677777877*******8 PP

  == domain 7  score: 2.4 bits;  conditional E-value: 0.092
                 EESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 
                 ++ H ++ +++  f  + + l+sGs  g   i++
  CCD26108.2 754 FSYHhNNLSAITtFFMNDNILVSGS-EGQFNIYN 786
                 55444665555555777777889**.99988886 PP

  == domain 8  score: -3.6 bits;  conditional E-value: 5
                 EEEEEEETTSSEEEEE CS
        WD40  13 vtslafspdgawlasG 28 
                 ++s+  +  g++l+++
  CCD26108.2 804 IWSV--NFKGSLLVAA 817
                 7888..5566666654 PP

>> CDC4_D  Cell division control protein 4 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   9.7     1e-21   3.7e-18       4      51 .]     325     372 ..     322     372 .. 0.96

  Alignments for each domain:
  == domain 1  score: 65.1 bits;  conditional E-value: 1e-21
      CDC4_D   4 aelnelitnlstsLsesnyknLiFkLLsnlnRseLSDlntLikdnLKR 51 
                  ++++l++nl+++L++ +yknLiFk++snlnR+eLSD+n+L+++nLKR
  CCD26108.2 325 LLTENLYNNLKNQLTPIQYKNLIFKIISNLNRTELSDMNSLLNNNLKR 372
                 6799*******************************************9 PP

>> F-box-like  F-box-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.5   3.2e-14   1.1e-10       1      47 [.     375     421 ..     375     422 .. 0.96

  Alignments for each domain:
  == domain 1  score: 41.2 bits;  conditional E-value: 3.2e-14
  F-box-like   1 isrLPdEiLlqIFsyLppsdLlrlalVCrrWrrvaldtplLWrrlvl 47 
                 is+LP E+ ++I+  Lp +d+  + +VC +W+ ++++tp LW++l l
  CCD26108.2 375 ISSLPIELSIKILKNLPYQDIFKCLQVCPHWNKIINNTPMLWKNLLL 421
                 689****************************************9876 PP

>> F-box  F-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       3.7   1.3e+04      10      22 ..     346     358 ..     345     359 .. 0.82
   2 !   31.3   0.3   3.7e-11   1.3e-07       2      39 ..     374     411 ..     373     419 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.7
                 HHHHHHHTS-HHH CS
       F-box  10 vlrhILerLplsd 22 
                 ++ +I+++L+ ++
  CCD26108.2 346 LIFKIISNLNRTE 358
                 6889999999887 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 3.7e-11
                 HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT CS
       F-box   2 tlsrLPsevlrhILerLplsdllalrrVSkgwrilids 39 
                  +s+LP e+  +IL++Lp  d++ + +V+ +w+++i++
  CCD26108.2 374 IISSLPIELSIKILKNLPYQDIFKCLQVCPHWNKIINN 411
                 69*********************************986 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00012      0.43      25      88 ..     501     562 ..     483     565 .. 0.84
   2 ?   -0.9   0.0      0.59   2.1e+03      49      81 ..     627     659 ..     619     689 .. 0.78
   3 ?   -1.2   0.0       0.7   2.5e+03      49      81 ..     729     761 ..     725     772 .. 0.73
   4 ?    4.4   0.0     0.013        45      50      89 ..     771     809 ..     765     812 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
  ANAPC4_WD40  25 ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  + ++++  e +++++ v +L++ +dg +++ +  d +vr+ d++ g + h ++ +++ +v cl+
   CCD26108.2 501 SKKKIFLKELSGHEGGVWALKYDEDG-IIVSGSTDRTVRVWDIKRGCCTHVFKGHTS-TVRCLE 562
                  457788888899999*********99.7899*********************99988.699986 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.59
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhslsvkse 81 
                   g+++  +  d+++ + d+ + k++  l  +++
   CCD26108.2 627 HGNIIISGSYDNNLMVWDIAQMKCIYLLIGHTD 659
                  688888899999999999888888876655544 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.7
  ANAPC4_WD40  49 dgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++k L+ a +dg++r  d+++     s++ ++ 
   CCD26108.2 729 SDKYLVSAAADGSLRGWDSNDYSRKFSYHHNNL 761
                  7899**********9999887665555555544 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.013
  ANAPC4_WD40  50 gklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  +++L v+ s+g+ ++++  +g +vhs   k+++++ ++++
   CCD26108.2 771 DNIL-VSGSEGQFNIYNLRTGSLVHSDLLKDSDQIWSVNF 809
                  4444.67799***************988888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1542  (0.0860059); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.28s 00:00:01.04 Elapsed: 00:00:00.46
# Mc/sec: 5751.66
//
Query:       CCD26109.2  [L=1231]
Description: hypothetical protein NDAI_0G03320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-52  176.6  64.7    2.3e-51  174.3  64.7    2.6  1  SMC_N           RecF/RecN/SMC N terminal domain
    3.8e-25   88.5   0.0    2.1e-24   86.1   0.0    2.4  1  SMC_hinge       SMC proteins Flexible Hinge Domain
    8.5e-16   59.1  20.1    8.5e-16   59.1  20.1    7.1  3  AAA_23          AAA domain
    1.9e-09   37.7   1.6    8.1e-06   25.8   0.0    4.9  4  AAA_21          AAA domain, putative AbiEii toxin, Type IV TA
      2e-08   34.4  46.1      2e-08   34.4  46.1    4.7  2  AAA_15          AAA ATPase domain
    2.2e-08   33.7   0.1    4.8e-08   32.6   0.1    1.6  1  AAA_29          P-loop containing region of AAA domain
     0.0047   17.3   1.4     0.0047   17.3   1.4    7.3  8  HrpB7           Bacterial type III secretion protein (HrpB7)
  ------ inclusion threshold ------
      0.018   15.6   2.4      0.018   15.6   2.4    8.4  8  SlyX            SlyX
      0.072   12.7   0.0      0.072   12.7   0.0    6.5  8  AAA_27          AAA domain
      0.085   13.4   0.0      0.085   13.4   0.0    6.1  1  ABC_tran        ABC transporter
       0.37    9.8   3.4       0.97    8.5   0.0    3.3  4  Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd s
       0.69   10.5  14.3        8.8    6.9   0.7    5.2  4  HisKA_3         Histidine kinase
        4.7    7.5  10.1         21    5.4   0.0    4.6  5  AAA_22          AAA domain


Domain annotation for each model (and alignments):
>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.3  64.7   1.7e-54   2.3e-51       2     218 ..       4    1217 ..       3    1219 .. 0.98

  Alignments for each domain:
  == domain 1  score: 174.3 bits;  conditional E-value: 1.7e-54
                  EEEEEEESETTEECEEEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--........BTTCSSTTEEEEEEEE.....EE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxx.....xx RF
       SMC_N    2 lkrleienFksyagktvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihk........skekasvkkaeveitf.....dn 85  
                  l+ le++nFksy+g t+++  +++ft+i+GpNGSGKsn++dAi+FvLG rs+ +lrs+ ++dli++        ++e+ +v++a+v+ ++     d+
  CCD26109.2    4 LSGLELNNFKSYKGITKVGFGDSNFTSIIGPNGSGKSNMMDAISFVLGVRSS-HLRSNIVKDLIYRgvindngdTNEHGKVTSAYVKAFYekntaDD 99  
                  6789********************************************9988.************99998888888889999999999996554433 PP

                  TTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHHHHHCTT-STT............................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................................... RF
       SMC_N   86 edkklkiekeevsisrrvkrkgeseykingkevtkkevsellesagiske............................................... 135 
                   d++   ++  v+++r ++++g+++ykingk+vt+ke+se+le+++i ++                                               
  CCD26109.2  100 GDNDDDDDERPVELMRAISTNGDTTYKINGKTVTYKEYSEFLERENILIKaknflvfqgdveqiasqspmdlsklfeevsgsiqykkeydelkeqie 196 
                  33334445556************************************************************************************** PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD26109.2  197 klnqsaaesirnrrrihgelktykegitkdeeyknniekrkkyymylvlwqlyhlenekkksldnlknakseisqlknkitneeknlqrskssflke 293 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD26109.2  294 nlkvnkkreqlnyqlkekdklledlnsikipqraaskrinniekriesiqkdierqqgyintfenqlkvvtkakesfereikesaqnsnkyslsddd 390 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD26109.2  391 lklyeslnekylmengsaieqqisllnndkqevleemdrlnrkidaskkriteellisqeriqnenielvsslneknsifsekthelktlqaeiess 487 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD26109.2  488 nnqeydtnyklretllklddlnanqresikekklrenvtmlkrffpgvrglvhdlcrpkkdkyglavstilgknfdsiivdnlnvaqeciaffkkqr 584 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD26109.2  585 sgtasfipldtisseqptlnlpssqdyiltinaieydpeyeramqyvcsdsiicnsldiardlkwnkgvrsklvtiegalihkaglmtggiskdsnn 681 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD26109.2  682 rwdkeeyqslmtlkdklllqveeistksrlsstrardveielstlnaeisslrmqlsqvqrsldenkteinhqntlldqqynpklkslkekvdefdk 778 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD26109.2  779 swnelksnkeklqneifkeltdkvgftieeyerhsgellrkqskelqqlqkeilnienklqfeierlentqkrltsaesnlekahetlkslqkdene 875 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD26109.2  876 laeqvkqieseinsarneldsvnkvftaqqldinrmeeslgelndnsqtlkrnrdeikediakndlerigilknakvtnidipvisetnlsdlpidr 972 
                  ************************************************************************************************* PP

                  ................................................................................................. CS
                  ................................................................................................. RF
       SMC_N  136 ................................................................................................. 135 
                                                                                                                   
  CCD26109.2  973 idedtisvsneidvdytalpakykeemgsatkneldtkiknvedlldvlqpnaraadrfteaqerfeiidgetekiktterkalqqflkikkkrkel 1069
                  ************************************************************************************************* PP

                  ................................................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTT CS
                  ................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ................................................................lLSgGektLvalaLlfAiqkvkpaplyllDeid 168 
                                                                                  +LSgGekt++alaLlfAi++++p+p+++lDe+d
  CCD26109.2 1070 fenafdfvsehldniyreltrnpnssadlaggnasltlededepfnagvryhatpplkrfkdmeYLSGGEKTVAALALLFAINAYQPSPFFVLDEVD 1166
                  ************************************************************************************************* PP

                  TTS-HHHHHHHHHHHHHHCTT.SEEEEE-SSHHHCCC-SCEEEEEEEETTE CS
                  xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  169 aaLDeknvkkvaellkekskn.aQfivislreemlekadklvgvtkvengv 218 
                  aaLD +nv+++a +++++ +   Qfivisl+++m+ek+d+lvgv+ ++++ 
  CCD26109.2 1167 AALDITNVERIAAYIRRHGNPnLQFIVISLKNTMFEKSDALVGVFRQQQEN 1217
                  ****************988754************************88875 PP

>> SMC_hinge  SMC proteins Flexible Hinge Domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   1.5e-27   2.1e-24       2     116 ..     533     647 ..     532     648 .. 0.95

  Alignments for each domain:
  == domain 1  score: 86.1 bits;  conditional E-value: 1.5e-27
   SMC_hinge   2 kgvlGrladlievd.egyekAveaalgnrlqalvvedeetakkiieflkkknagratflpldrikqknkadgandknsgavplidlvevddelrkalry 99 
                 +gv G + dl++++ ++y  Av+++lg++ ++++v++ ++a+++i f+kk+++g a+f+pld+i++++++     ++  +   i+ +e+d+e+++a++y
  CCD26109.2 533 PGVRGLVHDLCRPKkDKYGLAVSTILGKNFDSIIVDNLNVAQECIAFFKKQRSGTASFIPLDTISSEQPTLNLPSSQ-DYILTINAIEYDPEYERAMQY 630
                 79**************************************************************9998777766666.9******************** PP

   SMC_hinge 100 llgdtlvvdsldeAeel 116
                 +++d ++++sld A++l
  CCD26109.2 631 VCSDSIICNSLDIARDL 647
                 **************987 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1  20.1   6.1e-19   8.5e-16       2     199 ..       7     276 ..       6     277 .. 0.67
   2 ?    4.2  12.4     0.039        53     143     199 ..     840     894 ..     839     899 .. 0.88
   3 ?    0.2   9.1      0.65   8.9e+02      87     185 ..     977    1069 ..     903    1089 .. 0.52

  Alignments for each domain:
  == domain 1  score: 59.1 bits;  conditional E-value: 6.1e-19
      AAA_23   2 Lkienfrsfrdqe.idF.skgltlItGpNGaGKTTildAiklaLygetprlsrks......grgfeksdveiesegkvkayveltfenkdgry...... 86 
                 L+++nf+s+++ + + F ++++t I+GpNG+GK+  +dAi ++L+ +++ l+++       ++ ++++  + e+++ ++ayv+  +e+++ ++      
  CCD26109.2   7 LELNNFKSYKGITkVGFgDSNFTSIIGPNGSGKSNMMDAISFVLGVRSSHLRSNIvkdliyRGVINDNGDTNEHGKVTSAYVKAFYEKNTADDgdnddd 105
                 89*******99665***888*******************************999986666432333333334444788999999998877777888999 PP

      AAA_23  87 .trsiererelskkkgkttkkaklelleideleqfisellgskkiilnlilflgqer....feefelkdkkerlee...lekeleeledekkllekl.. 175
                  +++  +    ++++g+tt+k +++ ++ +e  +f++++ ++  +  n+++f+g+ +    + +++l++ +e++     ++ke++el++++++l++   
  CCD26109.2 106 dDERPVELMRAISTNGDTTYKINGKTVTYKEYSEFLERE-NILIKAKNFLVFQGDVEqiasQSPMDLSKLFEEVSGsiqYKKEYDELKEQIEKLNQSaa 203
                 9566666666677889*********************95.33333345555555555668855666666666444411133333333333333333355 PP

      AAA_23 176 .................................................eqekekekeleeleeeleeilkel 199
                                                                  +++k+  ++l++ ++e+ ++++++
  CCD26109.2 204 esirnrrrihgelktykegitkdeeyknniekrkkyymylvlwqlyhleNEKKKSLDNLKNAKSEISQLKNKI 276
                 5555556666655555555555555554444447778888888877665455555558888888888888876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.039
      AAA_23 143 feefelkdkkerleelekeleeledekkllekleqekekekeleeleeeleeilkel 199
                 fe ++l+++++rl ++e  le++ ++ k l+k e+  e  ++ +++e+e++++ +el
  CCD26109.2 840 FEIERLENTQKRLTSAESNLEKAHETLKSLQKDEN--ELAEQVKQIESEINSARNEL 894
                 6778899************************9764..57889999999999998887 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.65
      AAA_23   87 trsiererelskkkgkttkkaklelleideleqfisellgskkiilnlilf..lgqerfeefelkdkkerleelekeleeled.ekkllekleqeke 180 
                  t s+++e+ + ++    ++k++  + +++el+ +i++     ++ l++++    +++rf      + +er e +  e+e++++ e+k l++ +++k+
  CCD26109.2  977 TISVSNEIDVDYTALPAKYKEEMGSATKNELDTKIKN----VEDLLDVLQPnaRAADRF-----TEAQERFEIIDGETEKIKTtERKALQQFLKIKK 1064
                  3333334444444444444444444444443333333....233333222200222222.....444568888888888865548888888899988 PP

      AAA_23  181 kekel 185 
                  k+kel
  CCD26109.2 1065 KRKEL 1069
                  88876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   5.9e-09   8.1e-06       1      26 [.      28      58 ..      28     113 .. 0.82
   2 ?   -1.8   2.7       1.5   2.1e+03      99     158 ..     418     477 ..     355     541 .. 0.69
   3 ?   -3.7   3.7       5.9   8.2e+03     115     199 ..     805     887 ..     745     982 .. 0.53
   4 !   20.2   0.6     3e-07   0.00042     187     296 ..    1058    1195 ..     959    1195 .. 0.62

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 5.9e-09
      AAA_21  1 lnvliGpNgsGKSnLLdaldllarl.....d 26
                ++ +iGpNgsGKSn +da++++ ++     +
  CCD26109.2 28 FTSIIGPNGSGKSNMMDAISFVLGVrsshlR 58
                789*******************987644441 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
      AAA_21  99 lldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltditsrawslllll 158
                  ++ ++lee+d+ n + + +++ ++++ l++ ++++ ++ + ++ l++  s +++  ++l
  CCD26109.2 418 NDKQEVLEEMDRLNRKIDASKKRITEELLISQERIQNENIELVSSLNEKNSIFSEKTHEL 477
                 456677888888888888888888888888888888888877777777777666655555 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 5.9
      AAA_21 115 argirggvsvfslkelsvsepndlqfgkaltditsrawsllllldglrkerigllnifadyfgfakekrllqrlvrslklveiel 199
                   ++++  s++ l+  s++ ++ ++ + ++ +   +  + l++ ++ +  +++  n+ +++ + +++++   +l  ++k++e+e+
  CCD26109.2 805 TIEEYERHSGELLRKQSKELQQLQKEILNIENKLQFEIERLENTQKRL--TSAESNLEKAHETLKSLQKDENELAEQVKQIESEI 887
                 333333333333333333333333333333333333333333333333..33333333333333333333333333333333333 PP

  == domain 4  score: 20.2 bits;  conditional E-value: 3e-07
      AAA_21  187 rlvrslklveielsdlgegeeliasvderlrer...........................gvvflengdgqelparelSdGtkrllalltallralk 256 
                  ++++  k++    ++  +++ ++ +++ r++ r                             ++  ++  +  ++  lS G k ++al+++++  + 
  CCD26109.2 1058 QFLKIKKKRKELFENAFDFVSEHLDNIYRELTRnpnssadlaggnasltlededepfnagVRYHATPPLKRFKDMEYLSGGEKTVAALALLFAINAY 1154
                  333333333333333333333333333333333344444444444444444444444453333333333333344446*******988888888877 PP

      AAA_21  257 kg.sllliDEpEngLHPkllrrllellkelsrngaQviltT 296 
                   + +++++DE+++ L+   ++r++  ++++ + + Q+i+ +
  CCD26109.2 1155 QPsPFFVLDEVDAALDITNVERIAAYIRRHGNPNLQFIVIS 1195
                  778************************999999****9976 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4  46.1   1.4e-11     2e-08       4     301 ..       5     409 ..       3     418 .. 0.72
   2 ?   -0.5   6.7      0.58     8e+02      68     184 ..     975    1096 ..     941    1142 .. 0.70

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 1.4e-11
      AAA_15   4 kkikikNFRslkd.veidlsee.ltvliGkNnsGKSsilealdlFlnnkekkn.kkvikiekedleifeniseskdikIdvef................ 83 
                 + ++++NF+s+k  +++ + ++ +t +iG+N+sGKS+ ++a+ + l   +++  ++ +k+      i++n +++   k++  +                
  CCD26109.2   5 SGLELNNFKSYKGiTKVGFGDSnFTSIIGPNGSGKSNMMDAISFVLGVRSSHLrSNIVKDLIYRGVINDNGDTNEHGKVTSAYvkafyekntaddgdnd 103
                 66899**************9999************************9977778444555555555555555555555555555555555555555555 PP

      AAA_15  84 .................................................................................aekekakeyektlkskek 101
                                                                                                  +    ++++e  ++ ++ 
  CCD26109.2 104 dddderpvelmraistngdttykingktvtykeyseflerenilikaknflvfqgdveqiasqspmdlsklfeevsgsiqyK----KEYDELKEQIEKL 198
                 55555555555555788888888888888888888888888888888999999999****9999999999999887655331....3333444444444 PP

      AAA_15 102 kkadlllkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikkleeslkkeeelknvlksaiikllli 200
                 +++  + ++ +++++  +k+ k  + k+e ++++i+  kk  ++   +  ++ ++++k++l+  k+ + ++++  ++++++e+ l+ + +s++++ l  
  CCD26109.2 199 NQSAAESIRNRRRIHGELKTYKEGITKDEEYKNNIEKRKKYYMYLVLWQLYHLENEKKKSLDNLKNAKSEISQLKNKITNEEKNLQRSKSSFLKENLKV 297
                 45555555666667776777777776666777777767777777777777888888888888778877777776666666666999999999999999* PP

      AAA_15 201 sakRnvsdedsekkssllgklkekileealqekleeelteklkeiqeklkeidkklaeelk.........kilkkkidkikkfnykgkkneeieik... 287
                 ++kR+  +++ ++k++ll+ l + ++ + +++k + ++++ +++iq++++ +++++++ ++         ++++  i+++ +  +k+        +   
  CCD26109.2 298 NKKREQLNYQLKEKDKLLEDLNSIKIPQRAASKRINNIEKRIESIQKDIERQQGYINTFENqlkvvtkakESFEREIKESAQNSNKY--------Slsd 388
                 *******************99999999999888899********************8888888666666655666665543222222........1323 PP

      AAA_15 288 .......ddeelplnknGsGv 301
                        + +e +l +nGs +
  CCD26109.2 389 ddlklyeSLNEKYLMENGSAI 409
                 222234455555555555555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.58
      AAA_15   68 feniseskdikIdvef.....aek..ekakeyektlkskekkkadll.lkkkesdlkktikdkklklkknelsdekisvekkkskkelpkekeekle 156 
                  ++ is s++i++d++      +e+  +  k+   +l++k k+ +dll + + + +  +++++ +  ++ ++  +eki+  ++k+ +++ k k++ +e
  CCD26109.2  975 EDTISVSNEIDVDYTAlpakyKEEmgSATKN---ELDTKIKNVEDLLdVLQPNARAADRFTEAQERFEIIDGETEKIKTTERKALQQFLKIKKKRKE 1068
                  3344444444444444777542225333333...333444444443304444555677788888888888999999999999999999999999999 PP

      AAA_15  157 kekeelkidkedlkklikkleeslkkee 184 
                  + ++ +++ +e l++++++l+ + ++++
  CCD26109.2 1069 LFENAFDFVSEHLDNIYRELTRNPNSSA 1096
                  9999999999999999999999988876 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.1   3.5e-11   4.8e-08       1      49 [.       4      53 ..       4      61 .. 0.89

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.5e-11
      AAA_29  1 LkrlqlvNWgtfdg.htieidlkgatlltGpsGsGKSTllDAiqalLvpa 49
                L+ l+l N  +++g +++ +  +++t ++Gp+GsGKS ++DAi+++L  +
  CCD26109.2  4 LSGLELNNFKSYKGiTKVGFGDSNFTSIIGPNGSGKSNMMDAISFVLGVR 53
                67799****************999**********************9655 PP

>> HrpB7  Bacterial type III secretion protein (HrpB7)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2      0.81   1.1e+03      84     125 ..     244     285 ..     183     305 .. 0.63
   2 ?    4.3   0.5     0.036        50      90     143 ..     320     373 ..     311     380 .. 0.77
   3 ?   -1.5   0.6       2.2     3e+03     111     131 ..     422     442 ..     404     458 .. 0.61
   4 ?   -2.3   0.1       3.8   5.3e+03      26      63 ..     472     509 ..     466     513 .. 0.79
   5 ?    2.6   0.3      0.12   1.6e+02      19      52 ..     725     758 ..     705     770 .. 0.73
   6 !   17.3   1.4   3.4e-06    0.0047      36     143 ..     767     879 ..     758     880 .. 0.82
   7 !   11.1   3.0   0.00028      0.39      83     150 ..     875     942 ..     873     944 .. 0.95
   8 ?    0.1   0.0      0.69   9.5e+02      13      73 ..    1049    1109 ..    1044    1111 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.81
       HrpB7  84 legrvraaeaelaaarqaldaaedavaatarkiaRndaqida 125
                 +  ++  +e+e ++  ++l++a+ ++++ + ki   + ++++
  CCD26109.2 244 VLWQLYHLENEKKKSLDNLKNAKSEISQLKNKITNEEKNLQR 285
                 444455555555555555555555555555555555555544 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.036
       HrpB7  90 aaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlrraaerared 143
                   +   +aa +++++ e++++  ++ i R ++ i+  +++++++ +a e  + +
  CCD26109.2 320 SIKIPQRAASKRINNIEKRIESIQKDIERQQGYINTFENQLKVVTKAKESFERE 373
                 555556788999999999999999999999999999999999988887765555 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 2.2
       HrpB7 111 atarkiaRndaqidacrerie 131
                 ++ +++ R++++ida ++ri 
  CCD26109.2 422 EVLEEMDRLNRKIDASKKRIT 442
                 344455566666666666653 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 3.8
       HrpB7  26 aaraalaaaeaalaaaqaqveaardavraheerlddlt 63 
                 ++  +l++++a++++ ++q+     ++r+   +lddl 
  CCD26109.2 472 EKTHELKTLQAEIESSNNQEYDTNYKLRETLLKLDDLN 509
                 56678899999999999998888888888888888775 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.12
       HrpB7  19 rlraeleaaraalaaaeaalaaaqaqveaardav 52 
                  l ae++  r +l + +++l + +++++++ + +
  CCD26109.2 725 TLNAEISSLRMQLSQVQRSLDENKTEINHQNTLL 758
                 5778888888888888888888888888877655 PP

  == domain 6  score: 17.3 bits;  conditional E-value: 3.4e-06
       HrpB7  36 aalaaaqaqveaardavraheerld....dlttgsspfsiadylacr.ayrdvlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrer 129
                 ++l+++ ++ ++  +++++++e+l+    + +t +  f+i++y  +   ++   + +++++++e+   +++l+ + ++++ t++++ ++++++++  e+
  CCD26109.2 767 KSLKEKVDEFDKSWNELKSNKEKLQneifKELTDKVGFTIEEYERHSgELLRKQSKELQQLQKEILNIENKLQFEIERLENTQKRLTSAESNLEKAHET 865
                 5566666777777777776666665211135688889******9986468899999******************************************* PP

       HrpB7 130 ierlrraaerared 143
                 ++ l++++++ +e+
  CCD26109.2 866 LKSLQKDENELAEQ 879
                 ********999985 PP

  == domain 7  score: 11.1 bits;  conditional E-value: 0.00028
       HrpB7  83 vlegrvraaeaelaaarqaldaaedavaatarkiaRndaqidacrerierlrraaeraredaadEEae 150
                 +l ++v++ e+e+  ar++ld  ++   a++  i R++ ++   +   + l+r+ ++ +ed+a ++ e
  CCD26109.2 875 ELAEQVKQIESEINSARNELDSVNKVFTAQQLDINRMEESLGELNDNSQTLKRNRDEIKEDIAKNDLE 942
                 6899*********************************************************9988765 PP

  == domain 8  score: 0.1 bits;  conditional E-value: 0.69
       HrpB7   13 rarreerlraeleaaraalaaaeaalaaaqaqveaardavraheerlddlttgsspfsiad 73  
                  ++ ++++l+  l+ ++++ +  e+a    ++++++   ++ ++ ++ +dl++g ++++++d
  CCD26109.2 1049 KTTERKALQQFLKIKKKRKELFENAFDFVSEHLDNIYRELTRNPNSSADLAGGNASLTLED 1109
                  6777888888888888888889999999999999999999999999999****99999987 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.37   5.1e+02      29      48 ..     184     203 ..     181     228 .. 0.70
   2 ?   -1.1   0.1       2.2     3e+03       6      30 ..     302     326 ..     297     334 .. 0.76
   3 ?    3.2   0.5     0.097   1.3e+02      14      54 ..     334     374 ..     328     383 .. 0.74
   4 ?   -0.1   1.7         1   1.4e+03      16      49 ..     410     443 ..     406     457 .. 0.76
   5 ?    6.1   0.9     0.013        18       4      46 ..     715     757 ..     712     785 .. 0.82
   6 ?   -1.7   7.7       3.3   4.5e+03      22      56 ..     820     854 ..     806     881 .. 0.53
   7 ?   15.6   2.4   1.3e-05     0.018       2      54 ..     877     929 ..     876     937 .. 0.90
   8 ?   -3.2   0.1       9.6   1.3e+04       7      23 ..    1006    1022 ..    1005    1035 .. 0.75

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.37
                 HHHHHHHHHHHHHHHHHT-X CS
        SlyX  29 qqqqidrlqrqlrllaerlk 48 
                   ++ d+l++q+++l++  +
  CCD26109.2 184 YKKEYDELKEQIEKLNQSAA 203
                 55666777777777766553 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.2
                 HHHHHHHHHHHHHHHHHHHHHHHHH CS
        SlyX   6 eeLEiklafqedtieeLndvvaeqq 30 
                 e+L  +l   ++++e+Ln + + q+
  CCD26109.2 302 EQLNYQLKEKDKLLEDLNSIKIPQR 326
                 6777788888999999998766665 PP

  == domain 3  score: 3.2 bits;  conditional E-value: 0.097
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXX CS
        SlyX  14 fqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleess 54 
                   e+ ie+ ++ + +qq  i   + ql+ +++  ++ e + 
  CCD26109.2 334 NIEKRIESIQKDIERQQGYINTFENQLKVVTKAKESFEREI 374
                 56788889999999999999999999998888776666554 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 1
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
        SlyX  16 edtieeLndvvaeqqqqidrlqrqlrllaerlke 49 
                 e++i  Ln+   e  +++drl r++++ ++r+ e
  CCD26109.2 410 EQQISLLNNDKQEVLEEMDRLNRKIDASKKRITE 443
                 6777778888888889999999999999999943 PP

  == domain 5  score: 6.1 bits;  conditional E-value: 0.013
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
        SlyX   4 rleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaer 46 
                 r  + Ei+l+ +   i +L  ++ + q+ +d+ ++++++ +  
  CCD26109.2 715 RARDVEIELSTLNAEISSLRMQLSQVQRSLDENKTEINHQNTL 757
                 6678999999999999999999999999999999888776554 PP

  == domain 6  score: -1.7 bits;  conditional E-value: 3.3
                 HHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXX CS
        SlyX  22 Lndvvaeqqqqidrlqrqlrllaerlkeleessga 56 
                  ++++ + q++i  ++ +l+   erl++ +++  +
  CCD26109.2 820 QSKELQQLQKEILNIENKLQFEIERLENTQKRLTS 854
                 44444444444444444444444444444433332 PP

  == domain 7  score: 15.6 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXX CS
        SlyX   2 eerleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleess 54 
                  e+++++E+++    + +++ n+v ++qq +i r+++ l +l+++ ++l+ + 
  CCD26109.2 877 AEQVKQIESEINSARNELDSVNKVFTAQQLDINRMEESLGELNDNSQTLKRNR 929
                 58899****************************************99998774 PP

  == domain 8  score: -3.2 bits;  conditional E-value: 9.6
                  HHHHHHHHHHHHHHHHH CS
        SlyX    7 eLEiklafqedtieeLn 23  
                  eL +k+   ed+++ L+
  CCD26109.2 1006 ELDTKIKNVEDLLDVLQ 1022
                  67788888888877765 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   5.3e-05     0.072       2      49 ..       3      49 ..       2      76 .. 0.86
   2 ?    0.0   0.1       0.4   5.4e+02     147     195 ..     173     221 ..     161     233 .. 0.75
   3 ?   -3.2   0.1       3.8   5.3e+03     163     194 ..     274     305 ..     257     327 .. 0.49
   4 ?   -2.6   0.1       2.6   3.5e+03     163     201 ..     312     350 ..     308     356 .. 0.80
   5 ?   -0.8   1.6      0.71   9.8e+02     163     200 ..     450     487 ..     409     524 .. 0.49
   6 ?   -1.1   0.3      0.87   1.2e+03     156     197 ..     735     776 ..     720     787 .. 0.78
   7 ?    8.6   1.8    0.0009       1.2     145     203 ..     849     907 ..     841     911 .. 0.91
   8 ?    2.7   0.0     0.057        79      21      50 ..    1031    1060 ..    1027    1093 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.3e-05
      AAA_27  2 rlerLdLeryGkftd.rsldfsaeeadlhliyGpNEAGKstalrAisdl 49
                rl+ L+L+ + ++++ +++ f+  +++++ i+GpN +GKs +++Ais +
  CCD26109.2  3 RLSGLELNNFKSYKGiTKVGFG--DSNFTSIIGPNGSGKSNMMDAISFV 49
                6778888888888883467787..89*******************9854 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.4
      AAA_27 147 lLfeasaGlaslrevleaLeaeadelfkprkskkrainealeeleeakk 195
                  Lfe  +G  + ++ +++L+++ ++l ++ +++ r+ ++ + el++ k+
  CCD26109.2 173 KLFEEVSGSIQYKKEYDELKEQIEKLNQSAAESIRNRRRIHGELKTYKE 221
                 5899999999999999999999999988887766555555555555444 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 3.8
      AAA_27 163 eaLeaeadelfkprkskkrainealeeleeak 194
                 +++++e ++l ++++s  ++  + +++ e+++
  CCD26109.2 274 NKITNEEKNLQRSKSSFLKENLKVNKKREQLN 305
                 33333333333333333222222222222222 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 2.6
      AAA_27 163 eaLeaeadelfkprkskkrainealeeleeakkelreaq 201
                 ++L ++ +++  p+++++++in+ ++++e+ +k ++++q
  CCD26109.2 312 DKLLEDLNSIKIPQRAASKRINNIEKRIESIQKDIERQQ 350
                 566677777778888888999999999999999988765 PP

  == domain 5  score: -0.8 bits;  conditional E-value: 0.71
      AAA_27 163 eaLeaeadelfkprkskkrainealeeleeakkelrea 200
                 e++++e  el ++ ++k+  + e+++el+++++e++++
  CCD26109.2 450 ERIQNENIELVSSLNEKNSIFSEKTHELKTLQAEIESS 487
                 33444444444443333333444444444444433332 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 0.87
      AAA_27 156 aslrevleaLeaeadelfkprkskkrainealeeleeakkel 197
                  +l++v+ +L+++++e+ ++++  ++++n +l++l+e   e 
  CCD26109.2 735 MQLSQVQRSLDENKTEINHQNTLLDQQYNPKLKSLKEKVDEF 776
                 578899999999999998888888888888888888876665 PP

  == domain 7  score: 8.6 bits;  conditional E-value: 0.0009
      AAA_27 145 gqlLfeasaGlaslrevleaLeaeadelfkprkskkrainealeeleeakkelreaqvr 203
                  + L +a++ l++ +e+l++L+++ +el ++ k+ + +in a++el++++k   ++q+ 
  CCD26109.2 849 QKRLTSAESNLEKAHETLKSLQKDENELAEQVKQIESEINSARNELDSVNKVFTAQQLD 907
                 567999*********************************************99998876 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.057
      AAA_27   21 fsaeeadlhliyGpNEAGKstalrAisdll 50  
                  f ++++++++i G  E  K+t ++A++++l
  CCD26109.2 1031 FTEAQERFEIIDGETEKIKTTERKALQQFL 1060
                  888999********************9987 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   6.2e-05     0.085      10      38 ..      25      53 ..      19     146 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 6.2e-05
                TTSEEEEEESTTSSHHHHHHHHTTSS--S CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 10 egekvaivGenGaGKStLlkllagllkpt 38
                 ++ + i+G+nG+GKS ++ +++  l   
  CCD26109.2 25 DSNFTSIIGPNGSGKSNMMDAISFVLGVR 53
                567799**************998666555 PP

>> Complex1_49kDa  Respiratory-chain NADH dehydrogenase, 49 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0007      0.97      24      83 ..     659     719 ..     653     729 .. 0.86
   2 ?   -3.5   0.0       3.2   4.5e+03      50      85 ..     767     804 ..     762     809 .. 0.71
   3 ?   -2.0   0.1       1.1   1.6e+03      47      82 ..     878     913 ..     867     921 .. 0.83
   4 ?   -1.1   0.0      0.58     8e+02     136     189 ..    1025    1080 ..    1020    1112 .. 0.68

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0007
                     HHHSSSSS-TTBESSBBSS---TTHHHHHHHHHHHHH.HHHHHHHHHHHSSSSHHHHHSSS CS
  Complex1_49kDa  24 evtGaRltasyiriGGvarDlpegllekikeflkele.kkldeleklltknrifkkRtkgv 83 
                     ++ Ga ++++ ++ GG+++D ++++ ++ ++ l +l+ k l ++e++ tk r+  +R ++v
      CCD26109.2 659 TIEGALIHKAGLMTGGISKDSNNRWDKEEYQSLMTLKdKLLLQVEEISTKSRLSSTRARDV 719
                     5779999999***************98877777666615578****************998 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 3.2
                     HHHHHHHHHHHHHHHHHHHH..HHSSSSHHHHHSSSS- CS
  Complex1_49kDa  50 ekikeflkelekkldelekl..ltknrifkkRtkgvgv 85 
                     +++ke ++e++k+++el++     +n+ifk+ t  vg 
      CCD26109.2 767 KSLKEKVDEFDKSWNELKSNkeKLQNEIFKELTDKVGF 804
                     56777788888888877644115679999999999986 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.1
                     THHHHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHSS CS
  Complex1_49kDa  47 gllekikeflkelekkldeleklltknrifkkRtkg 82 
                     + +++i++ +++ +++ld+++k++t +++ ++R+++
      CCD26109.2 878 EQVKQIESEINSARNELDSVNKVFTAQQLDINRMEE 913
                     456788888999999999999999999999999875 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.58
                      HHHHHHHHHHHHHHHHHHHHHHT--.S-SB-.--TTTS---GGG.GGT-HHHHHHH CS
  Complex1_49kDa  136 dRylvrveEmrqSlkIieqaleklpegpvla.edkkvalpkkee.vkksmealihh 189 
                      +R   r+ E ++ ++Ii+   ek+++ + +a ++   + +k++e + + ++ + +h
      CCD26109.2 1025 ARAADRFTEAQERFEIIDGETEKIKTTERKAlQQFLKIKKKRKElFENAFDFVSEH 1080
                      6778899999*******999999998665552333333333333033444444444 PP

>> HisKA_3  Histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.037        51      32      64 ..     185     217 ..     176     221 .. 0.87
   2 ?   -3.2   0.1       9.5   1.3e+04      23      55 ..     324     345 ..     312     350 .. 0.54
   3 ?    5.6   0.1     0.017        24      14      60 ..     727     773 ..     725     779 .. 0.83
   4 ?    6.9   0.7    0.0064       8.8      15      56 ..     850     894 ..     847     906 .. 0.85

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.037
                 TT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
     HisKA_3  32 ekdpekaaeqlreieelarealqevRrllhnLr 64 
                 +k+ ++++eq++++++ a e+++  Rr+ ++L+
  CCD26109.2 185 KKEYDELKEQIEKLNQSAAESIRNRRRIHGELK 217
                 566679**********************99987 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 9.5
                 HHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  23 qlelakrllekdpekaaeqlreieelarealqe 55 
                               +a +++ +ie+++++ +++
  CCD26109.2 324 PQ-----------RAASKRINNIEKRIESIQKD 345
                 33...........35555566666655555544 PP

  == domain 3  score: 5.6 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  14 gqsLsaiklqlelakrllekdpekaaeqlreieelarealqevRrll 60 
                   ++s++++ql+ ++r+l++++ +++ q + + ++ +  l+ +++ +
  CCD26109.2 727 NAEISSLRMQLSQVQRSLDENKTEINHQNTLLDQQYNPKLKSLKEKV 773
                 56799****************99999999999888888888777765 PP

  == domain 4  score: 6.9 bits;  conditional E-value: 0.0064
                 HHHHHHHHHHHHHHHHT...TT-HHHHHHHHHHHHHHHHHHHHHH CS
     HisKA_3  15 qsLsaiklqlelakrll...ekdpekaaeqlreieelarealqev 56 
                  +L+++  +le a+++l   +kd++++aeq+++ie+ +++a +e+
  CCD26109.2 850 KRLTSAESNLEKAHETLkslQKDENELAEQVKQIESEINSARNEL 894
                 5789999999999999877788888***************99987 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.034        47       6      22 ..      27      43 ..      24      47 .. 0.84
   2 ?    5.4   0.0     0.015        21      17      83 ..     129     196 ..     128     214 .. 0.64
   3 ?   -3.1   0.1       6.3   8.6e+03      95     109 ..     422     442 ..     356     455 .. 0.63
   4 ?   -3.0   1.3       5.9   8.2e+03      53      53 ..     787     787 ..     694     882 .. 0.61
   5 ?    1.2   0.0       0.3   4.2e+02      85     112 ..    1150    1177 ..    1033    1198 .. 0.64

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.034
      AAA_22  6 gilvvtGesGtGKTtll 22
                +++ ++G+ G+GK+  +
  CCD26109.2 27 NFTSIIGPNGSGKSNMM 43
                6899**********766 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.015
      AAA_22  17 GKTtllrrlleqldeeakaeeerpevv......fvtlpsstsskdllrellralglelkaerlsseelleale 83 
                 GKT++++++ e l++e+   +++  +v       +  +s++++++l++e+   ++ ++++     +el e++e
  CCD26109.2 129 GKTVTYKEYSEFLERENILIKAKNFLVfqgdveQIASQSPMDLSKLFEEVSGSIQYKKEY-----DELKEQIE 196
                 9************88887777555555566444666666667777777777777766655.....33333333 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 6.3
      AAA_22  95 liiDEaqhlr.....s.eeal 109
                  +++E+++l+     s +++ 
  CCD26109.2 422 EVLEEMDRLNrkidaSkKRIT 442
                 366777777654433134444 PP

  == domain 4  score: -3.0 bits;  conditional E-value: 5.9
      AAA_22  53 s 53 
                  
  CCD26109.2 787 K 787
                 1 PP

  == domain 5  score: 1.2 bits;  conditional E-value: 0.3
      AAA_22   85 alraravielliiDEaqh.lrseealeeL 112 
                  a++a++  +++++DE++  l+  +++e +
  CCD26109.2 1150 AINAYQPSPFFVLDEVDAaLD-ITNVERI 1177
                  4455555789*******9994.4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3222  (0.179709); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                       226  (0.0126053); expected 17.9 (0.001)
Passed Fwd filter:                       128  (0.00713927); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 2.92u 0.43s 00:00:03.35 Elapsed: 00:00:00.71
# Mc/sec: 5248.57
//
Query:       CCD26110.2  [L=2125]
Description: hypothetical protein NDAI_0G03330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   3.1e-165  550.8  13.9   6.1e-165  549.8  13.9    1.5  1  BLM10_mid   Proteasome-substrate-size regulator, mid region
    1.2e-30  105.6   1.0    4.1e-30  103.9   1.0    2.0  1  BLM10_N     Proteasome-substrate-size regulator, N-terminal
    1.5e-25   88.9   0.0    1.1e-24   86.2   0.0    2.6  2  DUF3437     Domain of unknown function (DUF3437)
  ------ inclusion threshold ------
       0.11   12.6   1.2        6.7    7.0   0.2    3.4  3  Stork_head  Winged helix Storkhead-box1 domain
        0.3   11.5   5.1        1.2    9.5   0.0    3.5  3  DUF2569     Protein of unknown function (DUF2569)


Domain annotation for each model (and alignments):
>> BLM10_mid  Proteasome-substrate-size regulator, mid region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  549.8  13.9  1.7e-168  6.1e-165       3     524 .]     495    1012 ..     493    1012 .. 0.98

  Alignments for each domain:
  == domain 1  score: 549.8 bits;  conditional E-value: 1.7e-168
   BLM10_mid    3 kLiksietffHPSnsGswtkplskfvkelikeflkRwneEekkeck.tpeerrLteeikkefVkiLrtvvllgifskdskvanyaqsaLklLalLeP 98  
                  +Li+sietf+HPSn+G+wtkp++kfv+++ik ++ R+++Ee+   k    e+ L++e++ +fV+iL +++++g+++k+++vany++s+ ++L+ + P
  CCD26110.2  495 NLIQSIETFVHPSNNGFWTKPIAKFVHAFIKLYHGRVKDEETAVKKgRSIEIFLSAECHFKFVDILFNILMIGAQNKSNEVANYYISCYAYLLEICP 591 
                  79****************************************666557899********************************************** PP

   BLM10_mid   99 d...lilpkiLeriypsL..eglnethRtiasLkalttlarvlvstklyrvhltplLslllpgIDlNDlekTlntlnfivsvaqfipiedltkeeee 190 
                  +    i++++L +iy++L  e++n++hR+i+sLk++t++ r++v ++lyr+h+t++Lsll+++ID+ND+++T+n++n ivs+a+f+p+++l++e e+
  CCD26110.2  592 KnsfRIFDRVLVEIYDTLtgEYINSRHRVISSLKQFTRILRFMVVHPLYRIHITNILSLLIDKIDMNDPQLTSNVTNSIVSIATFVPFQNLVREGEY 688 
                  *9999******************************************************************************************** PP

   BLM10_mid  191 lsdeslalefiqqevekleekkeeeeeeeefeldkeeeeaalrsStaaFeewvksfldrvftLlenlPeeskkksgklEesvvnklpatldillesl 287 
                  l++es++++fiq+++ +l+      +++++fe++++ +++a+r+St++Fe+++k +++++f++++           ++++ +++kl++t+  ++e++
  CCD26110.2  689 LTFESTTIPFIQEHIMHLKMG----QSSDNFETEDSVLDSAFRASTTIFENVIKVYVEKIFSVVDI----------ETDDPLITKLNQTTVLMQEAM 771 
                  ********************8....8899******99*****************************..........89******************* PP

   BLM10_mid  288 sdelfdlalkkvvdfvsnn....vksnavdavaellaalvkanpektlkkllpllienIreeiengAgsvrttseilprDraLvwnlsiLnevvrna 380 
                  +d++fd++++ +++ +++n    vk++++++ +++l+a+v+++++ t+ +l+++li+nI++++e+gAgs+r++sei++rD++Lv++l++Ln+v+r++
  CCD26110.2  772 DDKVFDYYIDIFQRRFWDNdyfkVKDPNYELTTIPLSAIVRRKNS-TSVSLVNTLIYNIKQQVERGAGSIRSSSEIQQRDVKLVLYLTTLNDVLRQS 867 
                  *********************************************.*************************************************** PP

   BLM10_mid  381 gealLkykdellellklllekcksergyvltsklvhslLltLtktyptesrlvnpeeekseelk.eehWGklqed......enlkikWhvPseeeid 470 
                  +e+lL+y+ ++l+++k+l+e++++++++vlts+l hs+L+tL +t+++++rl+ ++++    ++ +e+WG+lq+d      enl++ Wh+Ps++e++
  CCD26110.2  868 HESLLSYSAKILDFMKFLYEEVSNPPIDVLTSILTHSVLATLNTTEIIDYRLFGNNST----IPdTERWGGLQFDkrkydkENLDFIWHTPSDQEVK 960 
                  *******************************************************999....776899***************************** PP

   BLM10_mid  471 fAvelleeivepalkkleklleeekskkdkewsdelcryllllrlalsGislLf 524 
                  ++++lle+++++++++le+ ++e  +++d++++d++++y l+l+++lsGislL+
  CCD26110.2  961 LSIDLLENLTDHCITSLERQMNE--PRTDTSYTDKIQKYSLVLTHCLSGISLLI 1012
                  ***********************..9*************************995 PP

>> BLM10_N  Proteasome-substrate-size regulator, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   1.0   1.2e-33   4.1e-30       2      81 .]      77     156 ..      76     156 .. 0.97

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 1.2e-33
     BLM10_N   2 seeisratsygldypedeeellkeiedkkskffaRsrprtfpyeklLPYkvEsekerakyLshilknLYiAikslDiqgg 81 
                 +++++r+++y+++yp+de+++l++i+dk+s++f+R+++++f+ ek+LPYk+Es+k++a+yL+h+l+nL+iAi+slDiqg+
  CCD26110.2  77 DILKRRLKHYNINYPDDEATYLRSIYDKSSQWFSRDVKPKFEAEKYLPYKTESHKDKARYLCHVLVNLHIAISSLDIQGL 156
                 67899*************************************************************************95 PP

>> DUF3437  Domain of unknown function (DUF3437)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.4   4.9e+03      12      35 ..    1770    1794 ..    1747    1807 .. 0.54
   2 !   86.2   0.0     3e-28   1.1e-24       2      88 .]    2038    2125 .]    2037    2125 .] 0.97

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.4
     DUF3437   12 sAlvlafpyd.vPkwlpevleeLar 35  
                   +lv  +pyd v + + ++l +L++
  CCD26110.2 1770 ESLVFDHPYDqVRSSIGKLLNTLTQ 1794
                  3344444444333555555555554 PP

  == domain 2  score: 86.2 bits;  conditional E-value: 3e-28
     DUF3437    2 lerhaavlglsAlvlafpydvP..kwlpevleeLaraardpapirktvkktlseFkrthqDtWeedkkkFteeqledledvllspsYya 88  
                  ++ h++vlgl+A+++afpy +P  kw+p+ l+ L+++ar++ + + ++k+t++ Fk+ ++DtW+ d+++F+ e+ledle+v l++sYya
  CCD26110.2 2038 IKIHGSVLGLGAIISAFPYVFPlpKWIPSQLSILSSWARTNGMAGLAAKNTINTFKKVRSDTWKFDRESFSAEELEDLEGV-LWKSYYA 2125
                  689*****************8888****************99***************************************.******7 PP

>> Stork_head  Winged helix Storkhead-box1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       1.4   5.2e+03      33      59 ..     876     902 ..     864     905 .. 0.85
   2 ?    7.0   0.2    0.0019       6.7      35      65 ..    1267    1297 ..    1259    1301 .. 0.84
   3 ?    2.0   0.0     0.066   2.4e+02      15      55 ..    1768    1808 ..    1762    1810 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.4
  Stork_head  33 etlveaLkkaypeiqiPseeviydaLg 59 
                 +++++ +k  y+e+  P  +v+ ++L+
  CCD26110.2 876 AKILDFMKFLYEEVSNPPIDVLTSILT 902
                 5678888999************99997 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0019
  Stork_head   35 lveaLkkaypeiqiPseeviydaLgsLiker 65  
                  ++e  ++ yp+i  P++ ++ +++ +Li + 
  CCD26110.2 1267 MIEMATSIYPDIHKPAQSILAHCMKQLIGSY 1297
                  55666889*******************9765 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.066
  Stork_head   15 vlcqvisdlnsaeqsatletlveaLkkaypeiqiPseeviy 55  
                  ++ ++++d+  +++  ++ +l++ L+++ +++  Ps++ i 
  CCD26110.2 1768 IIESLVFDHPYDQVRSSIGKLLNTLTQNSSSLSLPSTDKIV 1808
                  5667899999999***********************99885 PP

>> DUF2569  Protein of unknown function (DUF2569)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00034       1.2      18     106 ..     327     416 ..     326     431 .. 0.79
   2 ?   -0.2   0.1      0.36   1.3e+03      90     131 ..     639     679 ..     602     682 .. 0.74
   3 ?    1.1   0.3      0.14   4.9e+02      36      81 ..    1644    1683 ..    1617    1734 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00034
     DUF2569  18 sllsialelidalkalfsleewstlknleslltlllileiitnialvafsilllvlffkrrksf...Pklyiifllanlvlalidalllspi 106
                 +l++++l+l+ + k++f+ ++ s lk++  +l + l     t+++l +++ ++ +++ k+ k++   P+++ ++  ++ ++a+  + l+  +
  CCD26110.2 327 QLFRLLLKLAHVAKPFFDANDESILKDTMDYLLSNLS-PSTTVTLLPILNSFVPYHYHKKNKVTdylPFCFSLWSSVTAIIAVD-THLYDFV 416
                 68999**********************9665555555.4556667778899999******9999999*******9999998886.7776666 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.36
     DUF2569  90 lanlvlalidalllspifekldaqairellqsvlaaaiwipY 131
                 l  + +  i +ll+ +i ++ d+q  +++  s++++a ++p+
  CCD26110.2 639 LYRIHITNILSLLIDKI-DMNDPQLTSNVTNSIVSIATFVPF 679
                 33333333446666666.899*******************98 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.14
     DUF2569   36 leewstlknleslltlllileiitnialvafsilllvlffkrrksf 81  
                   + ++++       ++ +i++i +++al++ s ++ + f+k+r+ f
  CCD26110.2 1644 KKYYDRY------DKASMIMSIEIFAALICSSKYMNIDFLKQRDAF 1683
                  2333333......345789999*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       847  (0.0472419); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.04u 0.27s 00:00:01.31 Elapsed: 00:00:00.46
# Mc/sec: 13879.28
//
Query:       CCD26111.2  [L=207]
Description: hypothetical protein NDAI_0G03340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-63  213.2   0.4    1.8e-63  213.0   0.4    1.0  1  Ras          Ras family
    2.8e-37  127.6   0.3    4.1e-37  127.1   0.3    1.2  1  Roc          Ras of Complex, Roc, domain of DAPkinase
    3.5e-19   68.9   0.2      4e-19   68.7   0.2    1.1  1  Arf          ADP-ribosylation factor family
    2.6e-07   30.2   0.2    3.3e-07   29.9   0.2    1.1  1  SRPRB        Signal recognition particle receptor beta subuni
    6.5e-07   28.9   0.1    7.4e-07   28.8   0.1    1.2  1  Gtr1_RagA    Gtr1/RagA G protein conserved region
    1.9e-06   27.9   0.1    2.9e-06   27.3   0.1    1.3  1  MMR_HSR1     50S ribosome-binding GTPase
    4.5e-06   26.7   0.2      0.089   12.7   0.0    2.2  2  RsgA_GTPase  RsgA GTPase
      2e-05   24.3   0.3    0.00035   20.2   0.1    2.3  2  GTP_EFTU     Elongation factor Tu GTP binding domain
     0.0067   16.0   0.1      0.076   12.5   0.1    2.1  1  FeoB_N       Ferrous iron transport protein B
  ------ inclusion threshold ------
      0.022   14.5   0.1       0.11   12.3   0.1    2.1  1  AAA_29       P-loop containing region of AAA domain
      0.023   14.2   0.0      0.055   13.0   0.0    1.6  1  AAA_7        P-loop containing dynein motor region
      0.041   14.1   0.1       0.14   12.4   0.0    2.1  2  AAA_22       AAA domain
      0.051   12.7   0.0       0.12   11.4   0.0    1.6  2  MCM          MCM P-loop domain
        0.1   12.9   0.1       0.26   11.7   0.0    1.7  2  AAA_16       AAA ATPase domain
       0.11   12.2   0.0       0.41   10.4   0.0    1.9  2  PduV-EutP    Ethanolamine utilisation - propanediol utilisati


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.0   0.4   1.5e-66   1.8e-63       1     161 [.      15     174 ..      15     175 .. 0.98

  Alignments for each domain:
  == domain 1  score: 213.0 bits;  conditional E-value: 1.5e-66
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvkkwveeikr 99 
                 K++l+Gds+vGK++ll+rfv+dkF+ ++++Tig+df++k+++++gk+vkl++wDTAGqe+f++++++yyr+a+gi+lvyd+t++++f+n+k+w++ +++
  CCD26111.2  15 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFSNIKQWFKTVNE 113
                 89************************************************************************************************* PP

                 HSTTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHHTSEEEEEBTTTTCTHHHHHHHHHHHHH CS
         Ras 100 vaeenvpivLvGnKvDleekravsteegeelakelglkfletSAktnenveeafeellreil 161
                 +a+++ +++LvGnK+D+++ r+v++e+ge+lakelgl+f+e SAk++ nv+e+f +l++ i+
  CCD26111.2 114 HANDEAQLLLVGNKSDMDT-RVVTYEQGESLAKELGLPFVESSAKNDDNVNEIFFTLAKLIQ 174
                 *****************95.*************************************99875 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.1   0.3   3.4e-40   4.1e-37       1     120 []      15     130 ..      15     130 .. 0.93

  Alignments for each domain:
  == domain 1  score: 127.1 bits;  conditional E-value: 3.4e-40
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenlk 96 
                 K++l+GdsgvGK++ll rfvedkf+++  +tig+df+ k+v +i+g       kkvkl++WDtaGqerfr++++ y+r+a  +ilvyd   +r+++n+k
  CCD26111.2  15 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTV-DING-------KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDvtdERTFSNIK 105
                 9***********************************99987.5655.......6799******************************98778899**** PP

                 HHHHHHHHHCSSS.-EEEEEE-TTT CS
         Roc  97 eWlkelkkvagks.pvilvgnkiDl 120
                 +W+k ++++a+++ +++lvgnk D+
  CCD26111.2 106 QWFKTVNEHANDEaQLLLVGNKSDM 130
                 *********98643899******96 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.2   3.3e-22     4e-19      10     141 ..       9     144 ..       1     175 [. 0.85

  Alignments for each domain:
  == domain 1  score: 68.7 bits;  conditional E-value: 3.3e-22
                 T.TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSS..EEEEEEEE..TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHH CS
         Arf  10 lkkkelrilllGLDnaGKtTilkklkleelvt.tvPTig..fnveelei..knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakee 103
                 +++  ++ill+G  + GK+ +l ++ +++++   + Tig  f+++++ i  k++k+++wD  Gqe+ R +   Y++   ++i v D++d++ +++ k+ 
  CCD26111.2   9 GYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPsFITTIGidFKIKTVDIngKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFSNIKQW 107
                 567789***********************987455665533899999997789********************************************99 PP

                 HHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTT CS
         Arf 104 LkalleeeelkevallvlaNKqDlpealseeelrellg 141
                 +k+ ++e+ + e++ll+++NK D+ + + + e  e+l+
  CCD26111.2 108 FKT-VNEHANDEAQLLLVGNKSDMDTRVVTYEQGESLA 144
                 987.689999**************99887776655554 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.2   2.7e-10   3.3e-07       5     150 ..      15     156 ..      11     186 .. 0.80

  Alignments for each domain:
  == domain 1  score: 29.9 bits;  conditional E-value: 2.7e-10
                 EEEEE-STTSSHHHHHHHHHHSS---B---S.S-EEETTG.....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHHHH CS
       SRPRB   5 avllvGlsdsGKTslftrLttdsvkktvtSq.essaalkv..ksekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAElly 100
                 ++ll+G s  GK  l+ r  +d+++++ +      +  k+   + k+ kl+l D  G+e++r+  +    + + + g++ v D t d++   ++  ++ 
  CCD26111.2  15 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTiGIDFKIKTvdINGKKVKLQLWDTAGQERFRTITTA---YYRGAMGIILVYDVT-DERTFSNIKQWFK 109
                 79********************999987655333333333234889999*************85443...68899********87.99**********9 PP

                 HHHHHHHHHTT---EEEEEE-TTSTT---HHHHHHHHHHHHHHHHHCHHH CS
       SRPRB 101 eilliteklkdavdiliACnKqelflakspklikdaLEkElnkiierrsk 150
                 ++   +e+++d+ ++l+  nK+++ +        ++L kEl+  ++  s+
  CCD26111.2 110 TV---NEHANDEAQLLLVGNKSDMDTRVVTYEQGESLAKELGLPFVESSA 156
                 87...56667**************99988888889999999876554443 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   6.2e-10   7.4e-07       1     107 [.      15     113 ..      15     169 .. 0.76

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 6.2e-10
   Gtr1_RagA   1 kvLLmGksgsGKtsm.rsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletl 98 
                 k+LL+G sg GK+++  + + d++ +  ++++g+  +++  ++ + ++++l+lwD  Gqe+f + +        +r    +i V Dv+++   ++++++
  CCD26111.2  15 KILLIGDSGVGKSCLlVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTIT-----TAYYRGAMGIILVYDVTDERTFSNIKQW 107
                 89************73578999***********9999999999.6889*************98876.....4556666778889999966544444444 PP

   Gtr1_RagA  99 keilealrq 107
                  ++++   +
  CCD26111.2 108 FKTVN---E 113
                 44433...2 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   2.5e-09   2.9e-06       1     113 [.      15     126 ..      15     127 .. 0.64

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 2.5e-09
                 EEEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT..EEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHH CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg..keielvDtpGliegaseekglgkaflaleeadlillvvdas.eeklkpldee 96 
                 +++++G + vGKS L+ + +++k   s +    +d + ++v+++g   +++l+Dt+G  e   + + ++ a+ +   a  i+lv d++ e++++++++ 
  CCD26111.2  15 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGkkVKLQLWDTAG-QE---RFRTITTAYYR--GAMGIILVYDVTdERTFSNIKQW 107
                 589*****************9866555555555555555555444234599******.44...23356666653..5899******8853345555544 PP

                 HHHHHHH..TTSEEEEEEE CS
    MMR_HSR1  97 leellee..akkplilvln 113
                 ++ ++e+  ++ +l+lv n
  CCD26111.2 108 FKTVNEHanDEAQLLLVGN 126
                 4444433334555666666 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   9.7e-05      0.12     102     121 ..      16      35 ..      10      63 .. 0.84
   2 !   12.7   0.0   7.5e-05     0.089      36      99 ..     108     171 ..      73     177 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9.7e-05
                  EEEECSTTSSHHHHHHHHCT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallp 121
                  ++l+G SGvGKS L+ ++++
   CCD26111.2  16 ILLIGDSGVGKSCLLVRFVE 35 
                  579***********977765 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 7.5e-05
                  HHHHHHHHHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT CS
  RsgA_GTPase  36 drfLvlaeekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktkegleelkellkd 99 
                   + + +  + ++++++v nK D+ ++  ++e+ ++  ++lg++++  sak+ ++++e+   l++
   CCD26111.2 108 FKTVNEHANDEAQLLLVGNKSDMDTRVVTYEQGESLAKELGLPFVESSAKNDDNVNEIFFTLAK 171
                  455556667789999******************************************9988876 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.15   1.8e+02       2      24 ..      12      34 ..      11      39 .. 0.85
   2 !   20.2   0.1   2.9e-07   0.00035      53     186 ..      47     167 ..      44     178 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.15
                CEEEEEEEESTTSSHHHHHHHHH CS
    GTP_EFTU  2 rirnigiighvDhGKtTLtdrLl 24
                +i++i +ig+   GK++L+ r +
  CCD26111.2 12 SIMKILLIGDSGVGKSCLLVRFV 34
                57899*************97766 PP

  == domain 2  score: 20.2 bits;  conditional E-value: 2.9e-07
                 TSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTE....EEEEEESCGST.HHHHHHHHHHH CS
    GTP_EFTU  53 giTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveGvepqteevlrlalkegvp....iivfiNKmDrl.kaelkeiveev 146
                 gi  k++++ ++  +kk +++l Dt G + F   +++ +r + g +lv d+++  +    + +    +e+ +    + ++ NK D+  +    e+ e +
  CCD26111.2  47 GIDFKIKTVDIN--GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFSNIKQWFKTVNEHANdeaqLLLVGNKSDMDtRVVTYEQGESL 143
                 666788888888..**************************************99777777666666666666666699999****98544444555555 PP

                 HHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHH CS
    GTP_EFTU 147 kqklsrkeeklekygekgekevpvvfgSalkgegvktlle 186
                  ++l             g    p+v  Sa++ ++v++++ 
  CCD26111.2 144 AKEL-------------G---LPFVESSAKNDDNVNEIFF 167
                 5555.............2...4555555555555555544 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   6.4e-05     0.076       2     153 ..      15     166 ..      14     169 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 6.4e-05
                 EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT..EEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEG...GGHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkg..keveivDlPGiYslsayseeekvardflleeepdvvvnvvda...tnlernL 95 
                 ++ l+G+  vGk+ l+ +  + k + +  + + ++ k  +++++g   ++++ D  G   + ++++             + +v +v d    +n+++ +
  CCD26111.2  15 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGkkVKLQLWDTAGQERFRTITTAYYRGAM-----GIILVYDVTDErtfSNIKQWF 108
                 6889999999999999999999988888888888777777776661145567788887776655443222222.....222344555542225888889 PP

                 HHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH CS
      FeoB_N  96 yLtlqllelgvpvvlalnmideaekkgieidlkkLsekLgvpvvktsakkkegieell 153
                   + + ++ +++++l+ n++d  ++  +  + ++L+++Lg+p v+ sak+ ++++e+ 
  CCD26111.2 109 KTVNEHANDEAQLLLVGNKSDMDTRVVTYEQGESLAKELGLPFVESSAKNDDNVNEIF 166
                 999999999999*********999999999999********************99985 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1     9e-05      0.11      25      39 ..      16      30 ..       7      33 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 9e-05
      AAA_29 25 tlltGpsGsGKSTll 39
                +ll+G+sG+GKS ll
  CCD26111.2 16 ILLIGDSGVGKSCLL 30
                79**********997 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   4.6e-05     0.055      34      73 ..      14      54 ..      10      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 4.6e-05
       AAA_7 34 kpvllvGptGtGKtviikd.llkkldkekylsltinfsaqt 73
                +++ll+G++G+GK++++ + + +k++++ ++++ i f+ +t
  CCD26111.2 14 MKILLIGDSGVGKSCLLVRfVEDKFNPSFITTIGIDFKIKT 54
                579**************997888999999999999998877 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00012      0.14       8      29 ..      16      37 ..      14     134 .. 0.87
   2 ?   -0.5   0.0       1.1   1.4e+03      38      38 ..     130     130 ..      99     191 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00012
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                ++++G sG+GK+ ll r++e +
  CCD26111.2 16 ILLIGDSGVGKSCLLVRFVEDK 37
                789***********99998865 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 1.1
      AAA_22  38 e 38 
                 +
  CCD26111.2 130 M 130
                 1 PP

>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0    0.0001      0.12      56      82 ..      12      39 ..       2      51 .. 0.72
   2 ?   -1.6   0.0         1   1.2e+03      55      67 ..      84      96 ..      60     170 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.0001
                SS-EEEEEESSTSTHHHHH.HHHHHHSS CS
         MCM 56 gdinvllvgdpgtaKsqlL.kyveklap 82
                + +++ll+gd+g++Ks lL ++ve+ ++
  CCD26111.2 12 SIMKILLIGDSGVGKSCLLvRFVEDKFN 39
                5578************998345555444 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1
                CSS-EEEEEESST CS
         MCM 55 rgdinvllvgdpg 67
                rg + ++lv d+ 
  CCD26111.2 84 RGAMGIILVYDVT 96
                5555555555543 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00022      0.26      27      51 ..      16      41 ..       7     120 .. 0.78
   2 ?   -1.8   0.0         3   3.6e+03      57      88 ..     155     176 ..     110     202 .. 0.61

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00022
      AAA_16 27 vllsGesGvGKsslv.rellralekd 51
                +ll+G+sGvGKs l+ r + + ++ +
  CCD26111.2 16 ILLIGDSGVGKSCLLvRFVEDKFNPS 41
                79**********99945444455554 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3
      AAA_16  57 rgkcdqlesaipysalaqalareellrqllde 88 
                 ++k+d++        + +++ + +l + + ++
  CCD26111.2 155 SAKNDDN--------VNEIF-F-TLAKLIQEK 176
                 4444444........22222.2.333333333 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00035      0.41       3      51 ..      15      65 ..      13      98 .. 0.85
   2 ?   -0.8   0.0      0.96   1.1e+03      86     117 ..      80     110 ..      68     116 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00035
   PduV-EutP  3 killiGkvgsGKttLtqalkgeel..kYkktqaiefsdeviDtPGeylenr 51
                killiG +g+GK  L  ++ ++++  ++  t  i+f+ +++D  G+ ++ +
  CCD26111.2 15 KILLIGDSGVGKSCLLVRFVEDKFnpSFITTIGIDFKIKTVDINGKKVKLQ 65
                8*************9999888776336889999999999999998866655 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.96
   PduV-EutP  86 svfnkeviGiitkidlaedeenieaveelLks 117
                 +   +  +Gii   d++ de   ++ ++++k+
  CCD26111.2  80 TAYYRGAMGIILVYDVT-DERTFSNIKQWFKT 110
                 55667788999999988.78888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       854  (0.0476323); expected 358.6 (0.02)
Passed bias filter:                      664  (0.037035); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.45
# Mc/sec: 1392.22
//
Query:       CCD26112.2  [L=850]
Description: hypothetical protein NDAI_0G03350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-91  305.9   0.7      7e-91  304.4   0.7    1.8  1  VTC              VTC domain
    4.1e-15   56.6  25.3    0.00015   21.8   0.0    5.0  5  SPX              SPX domain
    9.3e-11   42.0   1.3    1.4e-10   41.5   0.4    1.7  2  DUF202           Domain of unknown function (DUF202)
  ------ inclusion threshold ------
      0.018   14.9   0.8      0.029   14.2   0.8    1.3  1  DUF2975          Protein of unknown function (DUF2975)
      0.077   12.3   0.1        1.8    7.8   0.0    2.5  3  Methyltransf_10  RNA methyltransferase
        2.4    8.3   4.5        6.4    6.9   4.5    1.7  1  YqfQ             YqfQ-like protein
        2.8    5.6   7.4       0.16    9.7   1.6    1.6  2  PI3K_1B_p101     Phosphoinositide 3-kinase gamma adapter prot


Domain annotation for each model (and alignments):
>> VTC  VTC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.4   0.7   2.7e-94     7e-91       2     275 .]     208     542 ..     207     542 .. 0.96

  Alignments for each domain:
  == domain 1  score: 304.4 bits;  conditional E-value: 2.7e-94
                 -EEEEEEE-HHHHHHHHHHHHTTS-B----------------................................------EEEEEEE-TT-HHHHHHHH CS
         VTC   2 rnetKywvhsdnvvevktlilkhlpvlvygaseeeiaaallr................................ksadqtitsvYfDnndfelyenril 68 
                 ++ +K+w+h+dn++evkt+il+hlpvlvy+++ +e+++ l+r                                ks+d+ it++YfDn+ fely+n++l
  CCD26112.2 208 FKRFKFWIHPDNLMEVKTRILRHLPVLVYASALTENNDILNRfdtdlidtdgnnnipssnssvtnsdtenelarKSYDPIITNLYFDNEFFELYNNKLL 306
                 5789*********************************************************************************************** PP

                 T-TT--EEEEEEES-GGG-.-EEEEEEEE..--------EEEEEEEE-GGGHHHHH..---HHHHHHHHHHHHHT-.HHHHHHHHHHHHHHHHHHHHTT CS
         VTC  69 kmegaekiRlRwygkldne.dvflErktk..heswtgesstkerftlkqkfvksyl..lgrlpaeerleklkkkee.ekevekleqlaeeiqntilrns 161
                 k++ a+++RlRw+gkl ++ d+flE+++   + ++ + + +++r++lkqkf+++++  ++++++++ l+klk+++  e +++k++++++ iq +i++++
  CCD26112.2 307 KTSTAPTLRLRWTGKLIDKpDIFLEKRMSieNPKTGNIDLDETRLKLKQKFINGFIfnGDKHYKANVLRKLKDSGIdETDLNKMSSDFDAIQTFIMQEE 405
                 ****************************977778899999*****************666677778999998888767899****************** PP

                 -EEEEEEEEEEEEE--TT--SEEEEEEEEEEEEE----SSSS-SS-T..SS-SSTTSS-TT..TT--GGGEEE--SEEEEEEE--.............. CS
         VTC 162 lqPvvrtsYlRaaFqlstdnavRitiDtnlcmvredsfeerrkledt..werldedvqqpv..kllrkgevvrfpyavlEvKlqt.............. 242
                 lqPv+rt+Y+R+aFq+++d+++R+tiD+++ ++redsf++ r+++d+  w+r+d d ++p+  k lr+ge+++fp++v+E+K+++              
  CCD26112.2 406 LQPVLRTTYTRTAFQIPGDDRLRMTIDSDILYIREDSFDKSRPIRDPhnWHRTDLDSAAPIqtKHLRTGEYSKFPFSVMEIKIKNaapskdsdkgssms 504
                 ********************************************************99999999*********************************** PP

                 .....----HHHHHHHTSTT-EE-TT--HHHHHHHHHH CS
         VTC 243 .....skspewiqeLlashlvievpkfSKYqhgvaslh 275
                       k+ +wi +L++shlv+evpkfS Y++gvasl+
  CCD26112.2 505 taklpIKHGQWIYDLTNSHLVKEVPKFSSYVQGVASLF 542
                 *99999999***************************97 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.5   2.4e-07   0.00063       1      31 [.       1      31 [.       1      48 [. 0.92
   2 !   21.4   2.7   7.7e-08    0.0002     182     222 ..      55      95 ..      32     111 .. 0.85
   3 !   21.8   0.0   5.9e-08   0.00015     349     370 ..     119     140 ..     116     147 .. 0.93
   4 ?    0.2   0.2      0.21   5.4e+02     139     197 ..     262     308 ..     182     311 .. 0.61
   5 !    6.5   1.7    0.0027       6.8     243     327 ..     590     652 ..     476     718 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 2.4e-07
         SPX  1 MKFakeLeenlvpEWrdaYldYkqLKKlIkk 31
                M F+ +L  ++ p W+d Y+dY  LKKl+k+
  CCD26112.2  1 MLFGVKLANDIYPAWKDSYIDYERLKKLLKE 31
                669999999********************96 PP

  == domain 2  score: 21.4 bits;  conditional E-value: 7.7e-08
         SPX 182 aekeFferLdseLnkvetFykakeeefterlesLrkqleal 222
                  e++F+e Ld+eL+kv tF+  k + ++e+l+ L+kq ++ 
  CCD26112.2  55 DEANFVEALDHELEKVYTFQMNKYDTLMEKLNHLEKQTSNE 95 
                 7899*********************************8876 PP

  == domain 3  score: 21.8 bits;  conditional E-value: 5.9e-08
         SPX 349 lLKsYqeLNrtAFrKIlKKfDK 370
                 +L s+ +LN t+F KI KK+DK
  CCD26112.2 119 ELDSFNRLNYTGFMKIIKKHDK 140
                 799******************* PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.21
         SPX 139 ssssssesesssssspsllrrlfsesesreeksersyet..rplraekeFferLdseLnkv 197
                 +  ss++s ++s++              ++e + +sy+   + l  ++eFfe+ +  L k 
  CCD26112.2 262 NIPSSNSSVTNSDT--------------ENELARKSYDPiiTNLYFDNEFFELYNNKLLKT 308
                 22222222222222..............333333334441155559999999988877775 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.0027
         SPX 243 ifglksveaqvfessreldrgelse...eardkevseelekngwikptksklekkrneralekvkpektlkafldsvrrdylrkenrv 327
                   +l++v++++  s+ + +r + s    e                      +e++r+e +le++  e+  ++++++v+r+  +k ++ 
  CCD26112.2 590 LRRLSKVDNSSQPSEVSIQRRSASPaqaE----------------------EEDTRPEADLEDH--ESSDEEDNNNVQRQRRKK-DKR 652
                 22222222222222222222221112221......................2222222222222..222222222222222211.111 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.4   5.3e-14   1.4e-10       1      65 [.     705     769 ..     705     771 .. 0.96
   2 ?   -2.7   0.0       3.3   8.3e+03      45      57 ..     788     800 ..     776     809 .. 0.53

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 5.3e-14
      DUF202   1 rdglAnERTfLaWlRtslalialglallrffltgepsalgkilglilivlgiltllvglvrylrr 65 
                 +++lAnERTf  Wl+++++l +l + ++++ ++++  +l+  +++i+++l++++ ++++ +y+ r
  CCD26112.2 705 KVWLANERTFNRWLKVTTLLSILTFSIYNSVKKSSFPQLADMMAYIYFALTLFCGIWAYSTYINR 769
                 68******************************9999999***********************987 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 3.3
      DUF202  45 lilivlgiltllv 57 
                 l+l+v+ ++tl+v
  CCD26112.2 788 LVLAVILAFTLIV 800
                 3344444444444 PP

>> DUF2975  Protein of unknown function (DUF2975)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.8   1.1e-05     0.029       8      83 ..     730     805 ..     723     815 .. 0.93

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.1e-05
     DUF2975   8 elypeaaglrvpvlllgvlallafvvalvqlwkLlrsirkgevFspanvrrLrriglaliaaalllaagivalall 83 
                 ++y+ ++ +  p l+ +++++ +++  ++ +w+  ++i++ ++  +++ ++L++  + l++a++l++++iv++ ++
  CCD26112.2 730 SIYNSVKKSSFPQLADMMAYIYFALTLFCGIWAYSTYINRLKIIKERSGKHLDAPLGPLVLAVILAFTLIVNFGVA 805
                 68999999***************************************************************99875 PP

>> Methyltransf_10  RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0007       1.8     200     265 ..      24      90 ..      11     110 .. 0.81
   2 ?    1.4   0.0     0.063   1.6e+02      56      97 ..     505     546 ..     484     551 .. 0.86
   3 ?   -4.2   0.1       3.2   8.3e+03     154     172 ..     573     591 ..     571     595 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0007
                      ---...---.....---------TTTSHHHHHHHHHHHHHHHHHHH.HGGGEEEEEEEESSGGGHHH CS
  Methyltransf_10 200 rklknlgkanktralpslnfgGqkaelyceGGevafikklieeskq.lakqvlWfttlvskkenlap 265
                      r +k l++ +  + +ps n+  + ++l+ +  e++f++ l +e ++ +  q+  + tl+ k + l++
       CCD26112.2  24 RLKKLLKENDIIKDPPSCNNNKNDSDLWNDKDEANFVEALDHELEKvYTFQMNKYDTLMEKLNHLEK 90 
                      5556676666788999**************************97551677999******99887764 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.063
                      HHHHHHHH----.---TTS----HHHHHHHHHHHHHHHTGGG CS
  Methyltransf_10  56 kallrefygvsewdiPdgfliPpvPgradyihyvadllgkad 97 
                       a l  ++g  ++d+ + +l+  vP    y+  va l+g++d
       CCD26112.2 505 TAKLPIKHGQWIYDLTNSHLVKEVPKFSSYVQGVASLFGEDD 546
                      5666667777889************************99876 PP

  == domain 3  score: -4.2 bits;  conditional E-value: 3.2
                      TTEEEEE--TT-SCCHHSS CS
  Methyltransf_10 154 daiklrkqkekkaifdgli 172
                      +++klrkqke +a +dgl 
       CCD26112.2 573 EQLKLRKQKETQARIDGLR 591
                      57899*******9999986 PP

>> YqfQ  YqfQ-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.5    0.0025       6.4     103     163 ..     614     672 ..     599     693 .. 0.73

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0025
        YqfQ 103 lkssedeeteevteseevevseteeseknkkkkpkakkkkkkkkkkdvkeeeiekeapkek 163
                   ++e+e+t  +++ e++e+s  +e+++n++++ + kk k+k+k+ +++ + ++    k +
  CCD26112.2 614 PAQAEEEDTRPEADLEDHESS--DEEDNNNVQRQRRKKDKRKTKTGQTFFKILAGRDSKLT 672
                 446788888888999999999..99999999999999999999998887776666655555 PP

>> PI3K_1B_p101  Phosphoinositide 3-kinase gamma adapter protein p101 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.4      0.21   5.3e+02     297     354 ..      25      84 ..      13     204 .. 0.64
   2 ?    9.7   1.6   6.1e-05      0.16     315     426 ..     560     668 ..     526     705 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.21
  PI3K_1B_p101 297 Lneilekeselaspeeledeeeedeed..vdeeedleeeeeeeeedslarsstlstvsss 354
                   L+++l+++   + p ++++++++ +     de + +e+ ++e e+ ++++ +++ t+ ++
    CCD26112.2  25 LKKLLKENDIIKDPPSCNNNKNDSDLWndKDEANFVEALDHELEKVYTFQMNKYDTLMEK 84 
                   666666666666666665554444432223333334444444455555555555554444 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 6.1e-05
  PI3K_1B_p101 315 deeeedeedvdeeedleeeeeeeeedslarsstlstvsssskdsmlsllslsssslassvsslssgvdsdyvedsdessssspvaekkekkskkksk 411
                   ++   d +++ eee+l+ ++++e+++ +    +ls+v +ss+ s    +s+ ++s ++ +   +++     +ed + s ++++++ + ++++k+k k
    CCD26112.2 560 NDIRIDPKQAYEEEQLKLRKQKETQARIDGLRRLSKVDNSSQPSE---VSIQRRSASPAQAEEEDTRPEADLEDHESSDEEDNNNVQRQRRKKDKRK 653
                   334444444555555555555555555555556666666666655...5555555555555555555445555555554444433355566667778 PP

  PI3K_1B_p101 412 srlserlsrlfksks 426
                   ++ ++ + +++  + 
    CCD26112.2 654 TKTGQTFFKILAGRD 668
                   888999999885554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1734  (0.0967148); expected 358.6 (0.02)
Passed bias filter:                      731  (0.0407719); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.84u 0.34s 00:00:01.18 Elapsed: 00:00:00.49
# Mc/sec: 5222.88
//
Query:       CCD26113.2  [L=855]
Description: hypothetical protein NDAI_0G03360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-50  172.2   0.0    3.9e-50  170.5   0.0    1.9  1  MutS_V          MutS domain V
    1.4e-26   93.9   3.5    1.4e-26   93.9   3.5    1.8  2  MutS_III        MutS domain III
    1.2e-12   48.3   0.3    3.1e-12   46.9   0.3    1.7  1  MutS_II         MutS domain II
    3.3e-09   37.0   1.9    6.3e-09   36.1   0.1    2.5  2  MutS_IV         MutS family domain IV
     0.0018   18.1   0.0       0.16   11.6   0.0    2.4  2  AAA_30          AAA domain
  ------ inclusion threshold ------
      0.077   12.8   3.5       0.18   11.6   1.6    2.5  2  RNA_pol_Rpb1_6  RNA polymerase Rpb1, domain 6
       0.14   12.0   0.5        1.4    8.8   0.1    2.7  2  NACHT           NACHT domain
       0.45   10.8   2.8        5.1    7.4   0.0    3.4  3  Chaperone_III   Type III secretion chaperone domain


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   0.0   1.8e-53   3.9e-50       1     183 [.     644     825 ..     644     830 .. 0.95

  Alignments for each domain:
  == domain 1  score: 170.5 bits;  conditional E-value: 1.8e-53
                 EEEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHHH CS
      MutS_V   1 llitGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlaia 99 
                 ++itG+n +Gks+ylrq+al++++aq+Gs vpa+ a ++i+ k+++Rv ++D ++ ++stF +Em+E+a++l+++ + +l+ilDElGRG+s+ dG++i+
  CCD26113.2 644 QIITGCNGSGKSVYLRQIALLSIMAQMGSPVPATGACFPIFSKLHARV-CNDPMEMSSSTFSFEMKEMAYFLDDMDDTTLLILDELGRGSSIGDGFSIS 741
                 59**********************************************.9************************************************* PP

                 HHHHHHHHHTT--EEEEEES-GGGGGHHHHSTTEEEEEEEEE.EETTEEEEEEEEEES--S.S--HHHHHHHTT--HHHHHHHHHH CS
      MutS_V 100 lavaeyllekikaktlfatHyheltklaekleevknlhlavk.eeeedivflykvkegaae.ksyGikvaklaglPesvverArev 183
                 la++eyl++ +k++++++tH++++ ++ +++++v +lh++ + ++++++++ly+v + + + ++ Gik ++    P+ +v++A   
  CCD26113.2 742 LAITEYLIQ-KKSNVFLSTHFKDIPAILTSKPNVVHLHMQSQlQWDNSMKMLYHVGNEVDDiENIGIKLVSKYFDPD-IVTKAYAF 825
                 ********9.799**************************9986789*********88877669*******9999998.77777665 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.5   5.7e+03     117     117 ..     221     221 ..     137     264 .. 0.48
   2 !   93.9   3.5   6.4e-30   1.4e-26       2     191 .]     286     595 ..     285     595 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 2.5
                 S CS
                 x RF
    MutS_III 117 e 117
                 +
  CCD26113.2 221 D 221
                 1 PP

  == domain 2  score: 93.9 bits;  conditional E-value: 6.4e-30
                 HHHHTTSSS-.TTS.SSSS-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHH.T..TT.HHHHHHHHTT---HHHHHHHHHTT---...HH CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xx RF
    MutS_III   2 TlrnLeilen.lrggskegsLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVee.leneelreelrellrrlpDleRllsrislgkak...ar 95 
                 T + Le++en ++  ++  s  ++l+ T+T+mGaR Lr+++lqPltd+++I  Rld+++e  +++++  ++r +++  +Dl++l s++ + +     ++
  CCD26113.2 286 TSTGLELVENkID--KNGLSFWKFLNTTSTKMGARSLRNNILQPLTDKSSILMRLDVIKElQKDKDFLISIRREMKLYQDLDKLFSKLLSVNHAaikPE 382
                 6678***999444..3345*****************************************5556666677777777667*******9866322111122 PP

                 H....HHHHHHHHHHHHTTTTT---SSTHHHHH............HHHH..HHHHHHB-SS--SSGGGS--B-T......................... CS
                 x....xxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxx..xxxxxxxxxxxxxxxxxxxxxxx......................... RF
    MutS_III  96 d....lkallealkaleelvallekeklaesee............esla..elleeaideeplalekegedlra......................... 151
                 +    ++ l ++++ +  l++lle+ +l+++                 +  + ++e  ++e++                                    
  CCD26113.2 383 QkinyILLLKDSISITLTLKKLLEEVNLESQLLqeakkifnntsiL--EieNDINE-YINEDSVWA-------Ssclelknqqsyavkggangllgvsr 471
                 2444422233333333333333322222211111111122222221..12234444.444444444.......14444444889999999999****** PP

                 ....................................................................................HHHHHHHHHHHHHHH CS
                 ....................................................................................xxxxxxxxxxxxxxx RF
    MutS_III 152 ....................................................................................iealeqelfqellee 166
                                                                                                     i  l +++++ell++
  CCD26113.2 472 qlyrssvdsitdeieelskkydlpidynfdsfrgfylkikkqafpelnevpnifinvvskknfiecttmdilkenaklkeiiseISMLSEQAIHELLDK 570
                 *******************************************************************************999877777799******** PP

                 HHHTHHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 167 veealerlrrlaealaeLDvllSlA 191
                 +++++++l+ ++ea++ LD+l+++A
  CCD26113.2 571 IAKNISVLFMISEAVSILDLLCCFA 595
                 ************************9 PP

>> MutS_II  MutS domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.3   1.4e-15   3.1e-12       3     130 ..     117     258 ..     115     267 .. 0.76

  Alignments for each domain:
  == domain 1  score: 46.9 bits;  conditional E-value: 1.4e-15
                 EEEEEEE.TTTSE.EEEEEEETTTTEEEEEEEEE...-HHHHHHHHHH-ESEEEEESS-SCCCH.............HHHHHCHCTTT-EEEEESCCCC CS
     MutS_II   3 laAisek.regrr.vGlafiDlstgefvvsefed...feeleaeLsrlsPkElllpedlsesta.............eeessklrelrsrvgvretvef 83 
                 l++++e  +e  + vGl+f++ stg++ +s+f+d   f + +++++ ++P+Elllp++ +++++             + ++s+  ++++      ++++
  CCD26113.2 117 LCCLYEIpKEVETrVGLCFLNYSTGKMILSDFMDsqiFIRTVHKIQIHQPTELLLPSSSLSPNVsklatilkfniseTVKISEASSKFFDPHEGLAAIS 215
                 67766666455555************************************************9988888888887666666666666666666666777 PP

                 SHCCHHHHCHHHB..--STTTTTTTGGG-HHHHHHHHHHHHHCCCCCSC CS
     MutS_II  84 esekaserleedf..svedldgfglekekklalaAlgalisYleetqke 130
                 +++ + ++ +e +   ve+l +      k  al+A +a i+Y  e+ ++
  CCD26113.2 216 KYAIKDKDDTEEHvrIVEELID------KTFALSATAASIKYTDELVNK 258
                 7777777777666553444444......445999999999999888766 PP

>> MutS_IV  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       2.9   6.4e+03      58      60 ..     405     407 ..     350     437 .. 0.54
   2 !   36.1   0.1   2.8e-12   6.3e-09       2      90 ..     463     553 ..     462     555 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.9
                 T-- CS
     MutS_IV  58 vpk 60 
                 +++
  CCD26113.2 405 LEE 407
                 233 PP

  == domain 2  score: 36.1 bits;  conditional E-value: 2.8e-12
                 TSHHHHHHHHHHHHHHHHHHHHHCCCCCCCT-TTBEECCCSSSEEEEEE-TCC...CTTT--SEEEEEECTCEEEEECCCHHHHHHHHHHHH CS
     MutS_IV   2 fdeeLdelrdrleelekeleeleekereklgikslkveynkvlGyylevtrse...akkvpkefirlqtlknseryttaelkkleaelleae 90 
                  +  L  +r++++   ++++++ e++++k+++  +++++++ +G+yl++ ++     ++vp+ fi++ ++kn +++tt ++ k +a+l+e+ 
  CCD26113.2 463 ANGLLGVSRQLYRSSVDSITDEIEELSKKYDL-PIDYNFDSFRGFYLKIKKQAfpeLNEVPNIFINVVSKKNFIECTTMDILKENAKLKEII 553
                 5778999*************************.******************98777899999*************************99975 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.021        47      93     121 ..     552     579 ..     533     581 .. 0.89
   2 !   11.6   0.0   7.3e-05      0.16      16      98 ..     639     729 ..     634     734 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.021
      AAA_30  93 ivDEagmvdtkqlaallkaaekagakvil 121
                 i+ E++m++ + +++ll++++k +++v++
  CCD26113.2 552 IISEISMLSEQAIHELLDKIAK-NISVLF 579
                 899*****************99.888876 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.3e-05
      AAA_30  16 sgdrvavltGpAGtGKttalkal..reaweaaggrviglA.....ptgkaAkvLaeelgieastiakllkrlk...grarlepgtllivDEag 98 
                 ++  v+++tG  G+GK+  l+++    ++++ g +v +        ++  A+v ++ +++ +st    +k+++   +  ++++ tlli DE g
  CCD26113.2 639 NTSSVQIITGCNGSGKSVYLRQIalLSIMAQMGSPVPATGacfpiFSKLHARVCNDPMEMSSSTFSFEMKEMAyflD--DMDDTTLLILDELG 729
                 44569****************99333455555755544331122236666777777888888888888877777542..57788999999987 PP

>> RNA_pol_Rpb1_6  RNA polymerase Rpb1, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.54   1.2e+03     104     120 ..      36      52 ..      32      61 .. 0.85
   2 ?   11.6   1.6   8.2e-05      0.18     120     178 ..     359     416 ..     332     424 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.54
                     HHTT--SSS-B---HHH CS
  RNA_pol_Rpb1_6 104 kefkidkrkesdlspve 120
                     ++f+i+++++s+lsp++
      CCD26113.2  36 QQFSIQRQQQSRLSPKR 52 
                     79*************87 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 8.2e-05
                     HHHHHHHHHHTT--SS-SSSHHHHHHHHHTTTHHHHHHHHTS-HHHHHHTS---HHHHH CS
  RNA_pol_Rpb1_6 120 eviekvkelldklvvvrgddklskeaqenatllfkillrstLasKrvleeyrLskeaFd 178
                     + ++ +++l++kl+ v+ + +++ e++ n +ll+k  +  tL  K++lee +L+++ ++
      CCD26113.2 359 KLYQDLDKLFSKLLSVN-HAAIKPEQKINYILLLKDSISITLTLKKLLEEVNLESQLLQ 416
                     67889999999999888.99*********************************998665 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.27     6e+02      36      96 ..     302     347 ..     290     385 .. 0.58
   2 ?    8.8   0.1   0.00063       1.4       3      23 ..     644     664 ..     642     784 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.27
                 EEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS- CS
       NACHT  36 lvFflslrelsrsgnarsladllfsqlpepaapvsevwavllelperlLlilDglDelvtd 96 
                 l+F+ +l ++s++  arsl++ + ++l ++++               +L+ lD + el++d
  CCD26113.2 302 LSFWKFLNTTSTKMGARSLRNNILQPLTDKSS---------------ILMRLDVIKELQKD 347
                 55555555555555555555555555555444...............44444444444444 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00063
                 EEEEC-TTTCHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklala 23 
                  i++G +GsGK++ l+++al+
  CCD26113.2 644 QIITGCNGSGKSVYLRQIALL 664
                 689**************9864 PP

>> Chaperone_III  Type III secretion chaperone domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.15   3.3e+02      39      70 ..     116     147 ..     112     159 .. 0.82
   2 ?    7.4   0.0    0.0023       5.1      37      91 ..     167     228 ..     150     245 .. 0.72
   3 ?   -3.2   0.2       4.2   9.5e+03      12      26 ..     714     728 ..     710     729 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.15
  Chaperone_III  39 llcPlialPddiedlqailslnyaskvtlaad 70 
                    +lc l  +P+++e+   +  lny+    + +d
     CCD26113.2 116 ILCCLYEIPKEVETRVGLCFLNYSTGKMILSD 147
                    6899*******************976555555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0023
  Chaperone_III  37 lellcPlialPddiedlqailslnyaskvtlaa......d.aeksvllalyrlpaeseeedi 91 
                     ell P  +l  ++++l +il++n +++v ++       d  e+ + +++y + +++++e+ 
     CCD26113.2 167 TELLLPSSSLSPNVSKLATILKFNISETVKISEasskffDpHEGLAAISKYAIKDKDDTEEH 228
                    68999***********************9997511111121234455666666666666665 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 4.2
  Chaperone_III  12 ldPlddpallidddl 26 
                    ld +dd  lli d+l
     CCD26113.2 714 LDDMDDTTLLILDEL 728
                    899999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1113  (0.0620782); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 5758.68
//
Query:       CCD26114.2  [L=852]
Description: hypothetical protein NDAI_0G03370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-22   80.0   0.0    6.8e-22   77.7   0.0    2.2  2  RT_RNaseH       RNase H-like domain found in reverse transcri
    4.6e-17   61.9   0.0    3.8e-09   36.5   0.0    2.8  3  RT_RNaseH_2     RNase H-like domain found in reverse transcri
    1.6e-15   57.4   0.0    5.3e-15   55.7   0.0    1.9  1  rve             Integrase core domain
    7.2e-15   55.1   1.3    9.3e-15   54.7   0.1    1.9  2  RVT_1           Reverse transcriptase (RNA-dependent DNA poly
    1.4e-08   34.7   2.8    1.4e-08   34.7   0.9    2.1  2  Integrase_H2C2  Integrase zinc binding domain
  ------ inclusion threshold ------
       0.04   14.1   0.2       0.12   12.6   0.2    1.9  1  zf-H2C2         H2C2 zinc finger


Domain annotation for each model (and alignments):
>> RT_RNaseH  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   2.3e-25   6.8e-22       4     105 .]     290     411 ..     288     411 .. 0.90
   2 ?   -2.9   0.0       2.8   8.4e+03      68      88 ..     800     821 ..     795     829 .. 0.73

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 2.3e-25
                 S-EEEEEEECTEEEEEEEEEETTE......................EEEEEEEEEE--HHHHTS-HHHHHHHHHHHHHHHHHHHHTS--EEEE-SS--T CS
   RT_RNaseH   4 kpfiletDAsddgigavLsqreed..................ge..erpiafaSrklsgaernystiekellAivaalkkfrhylqgrkftvitDhknl 82 
                  p+ ++tDAs + +gav+ q  ++                  g+   +++ f S+kl++ae+nys++++ellAi + l++++++l g+++tvitDh+nl
  CCD26114.2 290 YPILIFTDASRYSTGAVVIQLSDKadsrkpiqiiideikernGKvqGKILGFSSHKLTPAEQNYSVYDLELLAIDKVLEQYEQWLIGSPVTVITDHANL 388
                 5889****************4444677788888888887777334579*************************************************** PP

                 TTTT----.---HHHHHHHC-XX CS
   RT_RNaseH  83 kyllskkslngrlarWaleLsey 105
                   l++k  l++r+ r +++L+++
  CCD26114.2 389 SRLTTKVRLTPRISRTMEFLMQF 411
                 *****9999***********998 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.8
                 HTS.--EEEE-SS--TTTTT-- CS
   RT_RNaseH  68 lqg.rkftvitDhknlkyllsk 88 
                 l   ++++v++D +  +y+++k
  CCD26114.2 800 LNTdTRIQVMSDEEWYNYIQEK 821
                 4553669999999999999865 PP

>> RT_RNaseH_2  RNase H-like domain found in reverse transcriptase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.8e-08   8.3e-05       7      61 ..     268     323 ..     262     333 .. 0.89
   2 !   36.5   0.0   1.3e-12   3.8e-09      55     100 .]     336     381 ..     326     381 .. 0.91
   3 ?   -3.4   0.0       3.3     1e+04       3      16 ..     674     687 ..     644     689 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 2.8e-08
  RT_RNaseH_2   7 kafeklkealtsapvLahpdpdkpfiletDaSdtgigavLsqedddgk.erpiafa 61 
                    +++ ke l+  p++  + p  p+ + tDaS +  gav  q +d+   ++pi+ +
   CCD26114.2 268 LEYQNFKETLQRLPTIGRFIPGYPILIFTDASRYSTGAVVIQLSDKADsRKPIQII 323
                  57899**************************************9998889999765 PP

  == domain 2  score: 36.5 bits;  conditional E-value: 1.3e-12
  RT_RNaseH_2  55 erpiafaSrklskaernysttekellAivwalkkfrhyllgrkftv 100
                   ++++f S+kl++ae+nys++++ellAi + l++++++l g+++tv
   CCD26114.2 336 GKILGFSSHKLTPAEQNYSVYDLELLAIDKVLEQYEQWLIGSPVTV 381
                  4799***************************************997 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 3.3
  RT_RNaseH_2   3 eeqekafeklkeal 16 
                  +++e+ f++l e+l
   CCD26114.2 674 DTAEETFQRLEEKL 687
                  45666677766666 PP

>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   1.8e-18   5.3e-15       3     117 ..     631     743 ..     629     744 .. 0.94

  Alignments for each domain:
  == domain 1  score: 55.7 bits;  conditional E-value: 1.8e-18
         rve   3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpg 100
                 rp  ++++D+   ++  +++g   +lv+vd f+r+++ +a +++++a+ +++ le+ ++  gg+ p ++l+Dng+ ++  +f + l+  gi++ +t  +
  CCD26114.2 631 RPHMIMSADHItDLD-TSKDGYNEILVIVDLFTRYTYLIAAKKQDTAEETFQRLEEKLCLHGGL-PITMLTDNGTKFK-GEFNKNLSWRGINHWNTSIY 726
                 788889999997666.678889******************************************.*************.7******************* PP

         rve 101 rpqdnGkvErfhrtlkd 117
                 r+++nG  Er+++++k+
  CCD26114.2 727 RAKSNGANERMNGIIKQ 743
                 ***************97 PP

>> RVT_1  Reverse transcriptase (RNA-dependent DNA polymerase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.1   3.1e-18   9.3e-15       1     222 []      34     193 ..      34     193 .. 0.86
   2 ?   -3.3   0.1       1.8   5.3e+03      77     112 ..     535     570 ..     517     585 .. 0.69

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 3.1e-18
                 EE-TT.S-EEE.......-THHHHCTB--.........-------HHHH.............HCCHTS--EEEEEEBCCGCCCSBB-GGGGGGG-EEET CS
       RVT_1   1 ipKkgpgsyRp.isllsvdykalnkliakrLkdvlekllsenqpgfrpgrstldavedllkalkkkkkaklllklDlkkaFdsvpleellrkltafkvp 98 
                 i+K+++++ R+ i     +y+  n+ ++          +++++p + +   +       +     +    +++ lD+ +aF +v+l++l++ +  fkv 
  CCD26114.2  34 IRKRDTEELRLvI-----NYRTANQYVIG---------MESQLPSIYDS--I-------V-----TLPDSVFTVLDITSAFYTVKLDKLSQDFLCFKVG 104
                 5666667777744.....77777777777.........77777776666..2.......2.....246789**************************** PP

                 .........................TEEEEESB--ST-TTHHHHHHHHHHHHHTT-T......TEEECTTEEEEEESSHHHHHHHHHHHHHHHHHTT-- CS
       RVT_1  99 tklinliksflstrsfsvrvngeeskgryekkglpqGsvlSPllfnlfmnellrelrkrakgvtllrYaDDililskskeelqelleaveewlkesglk 197
                                           + y   + p+G ++S  lf  f+n++l +  k     +l+ Y+DD+li+ k ++ + +l ++v ++l  +g++
  CCD26114.2 105 -------------------------NQTYRPLRAPMGYKNSAQLFAAFINHILPSSLK----PHLTIYVDDLLIIGK-PNTIVSLTREVIQHLGGYGIR 173
                 .........................8899**********************9999888....59********99876.6788999999*********** PP

                 BEGGG-EEE.....ESSEEETTEEE CS
       RVT_1 198 inpeKtklvlftvkseevkyLGvtl 222
                 ++++K+++      +++++yLG+++
  CCD26114.2 174 FSAKKIQFN-----QRSIEYLGYKI 193
                 *********.....********986 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.8
                 CCGCCCSBB-GGGGGGG-EEET.............. CS
       RVT_1  77 kkaFdsvpleellrkltafkvptklinliksflstr 112
                 k  F +++ ++ll k +++ +p++++++i  ++ ++
  CCD26114.2 535 KLHFLTIQGDKLLTKEHKWWIPQEQYEIILWIIWNT 570
                 555778888888888888888888888776666444 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.8   5.3e+03      34      45 ..     233     244 ..     225     251 .. 0.54
   2 !   34.7   0.9   4.8e-12   1.4e-08       9      57 ..     566     615 ..     561     616 .. 0.94

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.8
  Integrase_H2C2  34 yWpgmrkdvkky 45 
                     ++p++++  k++
      CCD26114.2 233 WIPNISESLKHM 244
                     444444444433 PP

  == domain 2  score: 34.7 bits;  conditional E-value: 4.8e-12
  Integrase_H2C2   9 ilkeaHds.agHlGiektlerlrrryyWpgmrkdvkkyvksCetCqrrkp 57 
                     i+ + H +   H Gi+ tl+ +r+ry +  ++k  + +v+sC++Cq +kp
      CCD26114.2 566 IIWNTHINnDMHRGIQETLRCIRKRYNFDDLYKLTQVVVNSCKICQSNKP 615
                     7888999999***************************************8 PP

>> zf-H2C2  H2C2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2     4e-05      0.12       5      39 .]     577     611 ..     574     611 .. 0.97

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4e-05
     zf-H2C2   5 HlGinkltallarkYhwlgiketvseVissCkaCq 39 
                 H Gi+ +   ++++Y +  ++++ + V++sCk Cq
  CCD26114.2 577 HRGIQETLRCIRKRYNFDDLYKLTQVVVNSCKICQ 611
                 99********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      582  (0.0324614); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.25s 00:00:00.99 Elapsed: 00:00:00.46
# Mc/sec: 5548.53
//
Query:       CCD26115.2  [L=235]
Description: hypothetical protein NDAI_0G03380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00096   19.7   0.0     0.0021   18.6   0.0    1.6  1  gag-asp_proteas  gag-polyprotein putative aspartyl protease
     0.0042   16.6   0.0     0.0066   15.9   0.0    1.4  1  Asp              Eukaryotic aspartyl protease
      0.005   17.1   0.1      0.018   15.3   0.1    2.0  1  RVP              Retroviral aspartyl protease
     0.0094   16.6   0.0      0.017   15.7   0.0    1.5  1  Asp_protease_2   Aspartyl protease
  ------ inclusion threshold ------
      0.012   15.1   0.1      0.021   14.4   0.1    1.3  1  Peptidase_A2B    Ty3 transposon peptidase
       0.08   12.7   0.0        0.2   11.5   0.0    1.6  1  Asp_protease     Aspartyl protease


Domain annotation for each model (and alignments):
>> gag-asp_proteas  gag-polyprotein putative aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     7e-07    0.0021       4      91 ..      47     140 ..      44     141 .. 0.65

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 7e-07
                      EETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEB....TT--EE-TTST.T-EEE.EEEE.EEE.EETTEEEEEEEEE..ESSSSEEEEHHHH CS
  gag-asp_proteas   4 kingkpvkflvDTGAsstiiseelaerlglsrkedk..gkvevktangev.eakrv.rlds.vkiggielrnvsavvle..gelddlLLGldfL 90 
                       i+ ++v++l+D+G +  +i+e++a+ l+ ++++ +  ++  vk+ +g + + +++  l s  k+++ + +  s++v++   +  +++LG  +L
       CCD26115.2  47 WIDKRQVQALLDSGSEINLIQEDVAKMLEHQKNVSRinNNNPVKIECGGKiSMSEYlLLGScFKLKERSYT-ASFHVVNisTNVPKMILGIPWL 139
                      58999***********************9988887633567788877754244444133332566555554.4555554213346777777766 PP

                      H CS
  gag-asp_proteas  91 k 91 
                      +
       CCD26115.2 140 R 140
                      5 PP

>> Asp  Eukaryotic aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.2e-06    0.0066     192     307 ..      45     150 ..       7     160 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.2e-06
                 EE.EEEEEEEEEEETTCSSEEEEHHHHHHHHHHHTTEEEETTCEEEEETTGGGGSEEEEEEETTEEEEEEGGGGEEEESSSTTSEEEESEEECCTSSSE CS
                 xx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         Asp 192 tv.lcssgcqailDtGTsllalptsivekiakaigakksesegeyvvdCdslsslpdisftiggakitvpvselvlkeeeseesqCilglvseeegdlw 289
                 t+ + ++++qa+lD+G  +  +++++++ + ++ + +  ++++ + ++C    s++++ +   g  ++++ ++++ + +       ++++  + + +++
  CCD26115.2  45 TIwIDKRQVQALLDSGSEINLIQEDVAKMLEHQKNVSRINNNNPVKIECGGKISMSEYLLL--GSCFKLKERSYTASFH-------VVNI--STNVPKM 132
                 335688999********************************9*******986666665554..6666666666655444.......3445..5666666 PP

                 EEEHHHHTTEEEEEETTT CS
                 xxxxxxxxxxxxxxxxxx RF
         Asp 290 iLGdvFlrsayvvfdldn 307
                 iLG   lr+  ++ ++++
  CCD26115.2 133 ILGIPWLREHGIILNFEQ 150
                 666666666666555555 PP

>> RVP  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   6.1e-06     0.018       5      33 ..      42      70 ..      38     147 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 6.1e-06
                SEEEEEETTEEEEEEE-TTBSSEEEES-- CS
         RVP  5 PllkvkiggkyieallDtGAdatviseed 33
                P+ ++ i  ++++allD+G ++ +i+e  
  CCD26115.2 42 PMATIWIDKRQVQALLDSGSEINLIQEDV 70
                999**********************9854 PP

>> Asp_protease_2  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.7e-06     0.017       4      47 ..      47      94 ..      44     138 .. 0.63

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.7e-06
  Asp_protease_2  4 tinGkpvrfllDTGasttlispelaekl....glkvreseltvrvsga 47
                     i+ + v++llD+G+  +li +++a+ l    ++++  ++++v+++  
      CCD26115.2 47 WIDKRQVQALLDSGSEINLIQEDVAKMLehqkNVSRINNNNPVKIECG 94
                    577789********************9965544445555555555554 PP

>> Peptidase_A2B  Ty3 transposon peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   7.1e-06     0.021      13      70 ..      20      77 ..      11      92 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.1e-06
  Peptidase_A2B 13 kklsikslpivhyiaipemdktaektikikntkvktlfdsgsptsfirrdivellkle 70
                   + ls + + i h  a  +       ti i++ +v++l+dsgs   +i+ d+ ++l+++
     CCD26115.2 20 QDLSTTNQTIYHIRARHQWKTLPMATIWIDKRQVQALLDSGSEINLIQEDVAKMLEHQ 77
                   6788999999999999999999999****************************99875 PP

>> Asp_protease  Aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   6.5e-05       0.2      29     123 ..      46     146 ..      36     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 6.5e-05
  Asp_protease  29 vevngvkvkafvdsGaqksilskkcae....rcglmrlldtrfkgiakGvGtkkilGrvhsaevklgdlflpvalsvle..dkevdlllGldllkrh 119
                   + +++ +v+a++dsG+   ++++++a+    + +++r+ ++    i  G  ++     +     kl++  ++ +++v++   +   ++lG+  l+ h
    CCD26115.2  46 IWIDKRQVQALLDSGSEINLIQEDVAKmlehQKNVSRINNNNPVKIECGGKISMSEYLLLGSCFKLKERSYTASFHVVNisTNVPKMILGIPWLREH 142
                   568999******************997222245677777777777777765555556666677899999999999998731344589********99 PP

  Asp_protease 120 qvii 123
                    +i+
    CCD26115.2 143 GIIL 146
                   9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       766  (0.0427241); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 1771.19
//
Query:       CCD26116.2  [L=173]
Description: hypothetical protein NDAI_0G03390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.033   14.1   0.6       0.11   12.5   0.6    1.8  1  Nore1-SARAH  Novel Ras effector 1 C-terminal SARAH (Sav/Rassf


Domain annotation for each model (and alignments):
>> Nore1-SARAH  Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.6   5.9e-06      0.11      13      31 ..      27      45 ..      27      46 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.9e-06
  Nore1-SARAH 13 iLeeEEeeeiqqikrkYta 31
                 +L+eEEe+ei+ +++ Y +
   CCD26116.2 27 VLDEEEEDEIKNVENPYLK 45
                 59************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       536  (0.0298957); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1290.31
//
Query:       CCD26117.2  [L=1037]
Description: hypothetical protein NDAI_0G03400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-31  108.0   1.4    2.1e-31  108.0   1.4    3.9  3  NFACT-C         NFACT protein C-terminal domain
      2e-21   76.3  40.8      2e-21   76.3  40.8    3.7  2  FbpA            Fibronectin-binding protein A N-terminus (Fbp
    3.1e-20   72.8   0.3    3.1e-20   72.8   0.3    2.6  2  NFACT-R_1       NFACT protein RNA binding domain
  ------ inclusion threshold ------
      0.076   13.2   0.2      0.076   13.2   0.2    2.7  2  Alpha-mann_mid  Alpha mannosidase middle domain


Domain annotation for each model (and alignments):
>> NFACT-C  NFACT protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.9      0.16   7.3e+02      49      87 ..     553     589 ..     512     597 .. 0.53
   2 ?   -5.2   5.3         4   1.8e+04      49      88 ..     836     903 ..     834     912 .. 0.41
   3 !  108.0   1.4   4.7e-35   2.1e-31       3     105 ..     912    1012 ..     910    1013 .. 0.97

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.16
     NFACT-C  49 KkGkavkeilekflkkkkkvdekeedkeklwprekelik 87 
                  k k v++ +ek +k  + +++ +++ +k  ++ +e++k
  CCD26117.2 553 EKQKRVEKNIEKAMK--NIEEKVNTQLKKKLKESHEVLK 589
                 222333333333333..2222333334444444455555 PP

  == domain 2  score: -5.2 bits;  conditional E-value: 4
     NFACT-C  49 KkGkavkeilekflk.............................kkkkvdekeedkeklwprekelika 88 
                 KkGk  k + +k+                                +k+++++ +++++ +++e++ +k 
  CCD26117.2 836 KKGKLKK-MQKKYADqdeserllrlqalgtlrglekqqlrekeeIAKQQKREYKKAKREKQKEMQALKF 903
                 5565433.3333333366666666666666666544444422111111112222233333334444444 PP

  == domain 3  score: 108.0 bits;  conditional E-value: 4.7e-35
     NFACT-C    3 eelslldsLvgtplpeDeileaipvcAPyaaLqkykYkvKlqPGsvKkGkavkeilekflkkkkkvdekeedkeklwprekelikalkeeelvntlp 99  
                  ++++ +++L +  +++D++++++pv+AP+ aL kykYkvK+qPGs+Kk+k++ eil+ f++  +kvd++ +dke +wp+e+elik+lke++lv  l+
  CCD26117.2  912 NYQKPFTELKAVLTKDDKVVDIVPVFAPWPALLKYKYKVKIQPGSAKKTKTLSEILHFFMN--RKVDTTLADKEIDWPNEHELIKTLKEQDLVLLLC 1006
                  67788999*****************************************************..9********************************* PP

     NFACT-C  100 vgkvkv 105 
                  v+k+kv
  CCD26117.2 1007 VDKLKV 1012
                  *****9 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3  40.8   4.5e-25     2e-21       2     433 ..       7     592 ..       6     600 .. 0.83
   2 ?   -4.5   6.3       1.4   6.3e+03     313     399 ..     873     900 ..     803     934 .. 0.60

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 4.5e-25
                 HHHHHHHHHHHHHHHTTXEEEEEEEEETTEEEEEEEETTEEEEEEEEXXTTTXEEEEXXXXXXXXSSXXHHHHHHHHHHTTXEEEEEEEXTTSSEEEEE CS
        FbpA   2 glvlaavvaELqkellggridkiyqpekdelvltlranrgrhkLllsahpsyarihltekpkenpkeppnFcmlLRkyLkgarivsieqlgfdRivels 100
                 +l+l+ + aEL+ +l+g r+++iy   + + ++ lr+n+  +kL + +   + rihlte +++ p++p+ F+m LRk+Lk +r+++++q+++dRi+ l+
  CCD26117.2   7 ALDLQILAAELKTSLEGYRLNNIYNASDSNRQFLLRFNKPDSKLNVIV-DCGLRIHLTEFTRPIPSAPSGFVMKLRKHLKSKRLTALRQVKNDRILVLQ 104
                 5789999*****************************988888877666.4499********************************************** PP

                 EEEEXTTSXEEEEEEEEEXXGGGXEEEEEETTTEEEEESSXBXXXSSXSXXBSTTXBXXXSXXXSXBXTT.SXXH.HHHHHHHHHS.XXXHHHHHHHBT CS
        FbpA 101 iekrdElgdeeeytLivEimgrhSNiiLvdeenkIidaikhvspkqsrvReilpgekYelPpsqdklnPl.eaeeleefkellskkekdlvkaLvkafq 198
                 +++           L++E +   +N+iL+de++kI+ + + v ++++       ge+Y+++++    + + +a++  + +++    +kd ++ Lvk+  
  CCD26117.2 105 FADG-------LFFLVLEFFSA-GNVILLDENRKIMSLQRIVHEHENI-----IGETYTMFDE----SLFhTADD-TNATNI---TNKDFSEGLVKNW- 181
                 ****.......899********.**************99999998555.....9*********....33424444.223333...2455555555554. PP

                 TXXHHHHHHHHTTXSSSH...............HHHHHHHHTXXX...................................................... CS
        FbpA 199 Glspllaeelleragldketsakelseedlerlyealqelleele...................................................... 243
                  l ++  + +++   + ++++ ++ ++++  ++++  + ll++                                                        
  CCD26117.2 182 -LDEVKQKYAVAASTILETSKNDKSHQKKKIKVMSIHKLLLSKEPhlssdllsknlkmskidpstsaldfenrvddiikllntteseyhqllndnehrv 279
                 .44444444444444333333333333333333333333333333555666788889****************************************** PP

                 ...........XXEE........XSSSEESSX....XTTXX.SSX....XXXSXHHHHHHHHTTTXXX--...SHHHHHHHHHHHHHHHHHHHHHHHHH CS
        FbpA 244 .......eekfepqlvlkee...kpeefsvvp....lkslselek....esfdslsealdeyYakkaerd...rveqkrsdlekrveneleklekklkk 321
                        +++f+p++  + +     e+f++++    +   +++ +    e     +++ld+++++ + ++   r+++++ + +k++ ++   ++kkl+ 
  CCD26117.2 280 gyildheNKNFNPKIDSNPDlefIYETFHPFEpyveE---KDKASshisEIPGYYNKTLDKFFSTIESSKyalRIQNQELQAKKKLDEAKLDNQKKLQA 375
                 ******9899999994444475667888888666432...2222223435566689********9887763225556666666779999999******* PP

                 HHHHHHCCGGH.....HHHHCCHH-----------------------..--................................................ CS
        FbpA 322 lekelekaeka.....enyrligelltaylyaikkgmsevelenyyde.ge................................................ 366
                 l +  + +e++     +n  l++e  +a++  + ++m++ ++e+ ++  ++                                                
  CCD26117.2 376 LIDVQSSNEEKghlivANADLVEEAKSAIQGLVDQQMDWNTIEKLIKSeQKkhvkiaelivlplnlkenkfkmklplktfdddeqndtsdeddnssssf 474
                 9999999999999**********************************853389********************************************** PP

                 ...................................................---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        FbpA 367 ...................................................evtIpLdprkspsenAqkyfkkykKlkraveaveeqieetkeeleyle 414
                                                                     +t+++d   s+  nA +yf+  k   ++++ ve+ ie++ +++e   
  CCD26117.2 475 sesdsenassssdasdsdisdfeteesvqkevppkkrktkrssatsqpnekMITVTIDLGFSAYANASEYFNAKKTSAEKQKRVEKNIEKAMKNIEEKV 573
                 **************************************************999*******************************************999 PP

                 HHHHHHHT-.-HHHHHHHH CS
        FbpA 415 sveaaleqaesledleeik 433
                 +++   +  es e l++i+
  CCD26117.2 574 NTQLKKKLKESHEVLKKIR 592
                 8888888888999998887 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHCCGGHHHHHCCHH-----------------------.-----------------HHHHHHHHHHHHHHHHHH CS
        FbpA 313 eklekklkklekelekaekaenyrligelltaylyaikkgmsevelenyydegeevtIpLdprkspsenAqkyfkkykKlkraveav 399
                  +++++++k++k+                                                            +kk+k+ k+++ ++
  CCD26117.2 873 LREKEEIAKQQKRE-----------------------------------------------------------YKKAKREKQKEMQA 900
                 22222222222222...........................................................22222222222222 PP

>> NFACT-R_1  NFACT protein RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.5      0.44     2e+03      22      99 ..     141     226 ..     126     229 .. 0.59
   2 !   72.8   0.3     7e-24   3.1e-20       1     108 [.     599     707 ..     599     708 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.44
   NFACT-R_1  22 neelik..kyleesdvwfhvdkessahvylrlsege.....leeipeelleeaaqlakanSia..gnklssvdvvyvpasnlsktap 99 
                  e++i   + + ++ ++  +d   ++++  +  ++      l+e++++    aa  + + S++  + ++++++v+ +++  lsk+++
  CCD26117.2 141 HENIIGetYTMFDESLFHTADDTNATNITNKDFSEGlvknwLDEVKQKY-AVAASTILETSKNdkSHQKKKIKVMSIHKLLLSKEPH 226
                 5666652223334456777888888888888433334544333555444.4455555555555434445578888887777777766 PP

  == domain 2  score: 72.8 bits;  conditional E-value: 7e-24
   NFACT-R_1   1 kvfwFkssdgylvimGkDkqeneelikkyleesdvwfhvdkessahvylrlsegeleeipeelleeaaqlakanSia.gnklssvdvvyvpasnlskta 98 
                 k++wF+ss+gylv+mGk++ e++++++ky+e++dv+   +++ +++v+++++ +   e+p+++l++a+ l+++ S+a ++k+ + ++++ +a+n++k +
  CCD26117.2 599 KYHWFISSEGYLVMMGKNDAETDQIYSKYIEDDDVF-MSNNF-GTKVWIKNPMKH--EVPPNTLMQAGILCMSSSEAwSKKI-ASSAWWCNAKNVTKFD 692
                 79******************************8855.55555.579****99999..********************66666.**************99 PP

   NFACT-R_1  99 p.....ldtGsvgfk 108
                 +     l++G +++k
  CCD26117.2 693 KfdksvLPPGVFVLK 707
                 989999999998877 PP

>> Alpha-mann_mid  Alpha mannosidase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.7e-05     0.076       7      65 ..     549     607 ..     543     630 .. 0.83
   2 ?   -1.8   1.2       0.8   3.6e+03      12      47 ..     886     921 ..     878     925 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
                     GTSSCHHHHHHHHHHHHHHHHHHHCCTTT-SCGC-HHHHHHHHHHHHHHHTCTTTTTT- CS
  Alpha-mann_mid   7 fTSrarlKrlnrkleslLraaellssaaaskgyeypkeeleelwkalllnqfHDilpGt 65 
                      TS+ ++Kr+++++e+ ++++e    ++ +k+ +  +e l++++   ++   H +++++
      CCD26117.2 549 KTSAEKQKRVEKNIEKAMKNIEEKVNTQLKKKLKESHEVLKKIRTPYFFEKYHWFISSE 607
                     59******************77655546699*******************999999876 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.8
                     HHHHHHHHHHHHHHHHHHHCCTTT-SCGC-HHHHHH CS
  Alpha-mann_mid  12 rlKrlnrkleslLraaellssaaaskgyeypkeele 47 
                     ++K+++r+ ++ ++a++    ++++ +y++p +el+
      CCD26117.2 886 EYKKAKREKQKEMQALKFTRNEKVKVNYQKPFTELK 921
                     689999999999999999988777778888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1037 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3389  (0.189023); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.05u 0.30s 00:00:01.35 Elapsed: 00:00:00.47
# Mc/sec: 6584.79
//
Query:       CCD26118.2  [L=380]
Description: hypothetical protein NDAI_0G03410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-29  102.9   0.0    2.8e-29  101.8   0.0    1.6  1  2-Hacid_dh_C   D-isomer specific 2-hydroxyacid dehydrogenase,
    5.9e-09   35.7   0.0    2.1e-08   33.9   0.0    1.8  1  2-Hacid_dh     D-isomer specific 2-hydroxyacid dehydrogenase,
  ------ inclusion threshold ------
      0.016   14.8   0.0      0.032   13.9   0.0    1.5  1  ApbA           Ketopantoate reductase PanE/ApbA
      0.082   13.0   0.2        9.4    6.3   0.0    2.4  2  AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD bindi
       0.17   11.4   0.0       0.34   10.4   0.0    1.5  1  IlvN           Acetohydroxy acid isomeroreductase, NADPH-bind
       0.18   11.9   0.0       0.34   11.1   0.0    1.4  1  NAD_binding_2  NAD binding domain of 6-phosphogluconate dehyd


Domain annotation for each model (and alignments):
>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.8   0.0   9.2e-33   2.8e-29      28     178 .]     186     341 ..     157     341 .. 0.86

  Alignments for each domain:
  == domain 1  score: 101.8 bits;  conditional E-value: 9.2e-33
                   CGSBS-GTTSEEEEES-SHHHHHHHHHHH.HTT-EEEEESSSHHHHHCHHHHTCEECSHHHHHH....H-SEEEE-S--STTTTTSBSHHHHHCST. CS
  2-Hacid_dh_C  28 allgkelsgktvGiiGlGrIGqavakrlk.afgmkviaydrskkkeeeeeelgvelvsleella....esDivslhlpltpetrhlinaeelakmk. 118
                     ++++ +gk+  ++GlG+IG++va +l+ ++gm++ + +r+++ +  +e++g +++ l++ l     +   ++++lp t+et+hlin++ la++  
    CCD26118.2 186 GQSIRSPRGKKCLVLGLGSIGKHVALKLQdGLGMDIHYCKRTEDLQV-KEKYGWKFHPLDDSLYsqlfQFKAIVVALPGTAETKHLINEKFLAHCDg 281
                   45567889*********************9************99776.888999999998765412226799***********************64 PP

                   TTEEEEESS-GGGB-HHHHHHHHHTTSCCEEEES--SSSSSGTCHHHHHSTTEEE-SS-T CS
  2-Hacid_dh_C 119 kgailiNtaRGglvdeeaLleaLksgkiagaalDvfeeeplpedspllelpnviltPHia 178
                   ++ +l+N +RG+++d +a+ +a ++g++++++ Dvf+eep  +++ l   + + +tPH+a
    CCD26118.2 282 PELVLVNLGRGQILDIDAVTTAFEEGQLRHFGGDVFYEEPKVNSDVLKMEDTTSVTPHVA 341
                   899***************************************886666667789****98 PP

>> 2-Hacid_dh  D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   6.9e-12   2.1e-08      50     129 ..      70     368 ..      64     371 .. 0.90

  Alignments for each domain:
  == domain 1  score: 33.9 bits;  conditional E-value: 6.9e-12
                 -BSHHHHHHH....TT--EEEESSSSCTTB-HHHHHHTT-EEEE-TTTTHHHHHHHH.......................................... CS
                 xxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......................................... RF
  2-Hacid_dh  50 kvtaevleal....pkLkviaragvGvDnvDldaakerGilVtnvpgystesvAElt.......................................... 102
                  +t+e++e+     + Lk+i++++ G++++D++++k+ Gi+++n  +   es+A  t                                          
  CCD26118.2  70 GLTKEIIEHEdfpqCTLKCIVLCSRGYNMIDIKTLKKFGIQLYNYQDEVDESIAIETfkvgqvgndvadcamwhvlegfrkfsyqqsiirklgntnetr 168
                 5889999887778899**************************************7778**********************************9999999 PP

                 ................................................................................................... CS
                 ................................................................................................... RF
  2-Hacid_dh 103 ................................................................................................... 102
                                                                                                                    
  CCD26118.2 169 anianktgyvfgheylrgqsirsprgkkclvlglgsigkhvalklqdglgmdihyckrtedlqvkekygwkfhplddslysqlfqfkaivvalpgtaet 267
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 PP

                 ..........................................................................T-BHHHHHHHHHHHHHHHHHHHTTC CS
                 ..........................................................................xxxxxxxxxxxxxxxxxxxxxxxxx RF
  2-Hacid_dh 103 ..........................................................................aaTeeaqeniaeeaaenlvaflkge 127
                                                                                           +aT e  e++ e a++n+++ +++e
  CCD26118.2 268 khlinekflahcdgpelvlvnlgrgqildidavttafeegqlrhfggdvfyeepkvnsdvlkmedttsvtphvaSATVEVFEQACELALTNIIRSITEE 366
                 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988887 PP

                 CG CS
                 xx RF
  2-Hacid_dh 128 sp 129
                 ++
  CCD26118.2 367 DN 368
                 66 PP

>> ApbA  Ketopantoate reductase PanE/ApbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   1.1e-05     0.032       2      36 ..     198     233 ..     197     249 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
                 EEES-SHHHHHHHHHHHH.HTHCEEEE-SCHHHHHH CS
        ApbA   2 ailGaGaiGsllaakLak.agadvtlilrsrrleal 36 
                 ++lG+G+iG  +a kL+   g d++ + r++ l+  
  CCD26118.2 198 LVLGLGSIGKHVALKLQDgLGMDIHYCKRTEDLQVK 233
                 79***************************9966644 PP

>> AdoHcyase_NAD  S-adenosyl-L-homocysteine hydrolase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0031       9.4      88     139 ..      72     122 ..      64     131 .. 0.83
   2 ?    4.1   0.0     0.015        45      23      43 ..     194     214 ..     189     230 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0031
                    SSSSB-HHHHCCS-TTEEE.EE-SSTTTTBTHHHHHTTT-EEEEEETTEEEEE CS
  AdoHcyase_NAD  88 nkdiitlehlkkmkddaiv.cniGhfdseidvaaleanalkkeevkpqvdrvt 139
                    +k+ii++e++ +   ++iv c  G+  + id+++l++ +++  + + +vd+  
     CCD26118.2  72 TKEIIEHEDFPQCTLKCIVlCSRGY--NMIDIKTLKKFGIQLYNYQDEVDESI 122
                    589***********99987477775..6799*************999999764 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.015
                    TSEEEEE--SHHHHHHHHHHH CS
  AdoHcyase_NAD  23 GkvavvaGyGdvGkGcaaslk 43 
                    Gk+++v G G +Gk  a  l+
     CCD26118.2 194 GKKCLVLGLGSIGKHVALKLQ 214
                    9*************9998776 PP

>> IlvN  Acetohydroxy acid isomeroreductase, NADPH-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00012      0.34       4      47 ..     194     236 ..     192     273 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00012
                 TS-EEEES-SHHHHHHHHHHHHT.T--EEEEE-TT-HHHHHHHHT CS
        IlvN   4 gkkiaviGyGsqGhaqalnlrds.gldvvvglregsksvkkAkee 47 
                 gkk  v+G Gs G+  al+l+d  g+d+ +  r+++ +vk  ++ 
  CCD26118.2 194 GKKCLVLGLGSIGKHVALKLQDGlGMDIHYCKRTEDLQVK--EKY 236
                 8999******************659999999998885544..444 PP

>> NAD_binding_2  NAD binding domain of 6-phosphogluconate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011      0.34       4     109 ..     199     309 ..     196     316 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00011
                    EE--SHHHHHHHHHHHH.TT-EEEEE-SSHHHHHHHHHTTEEE-SSHHHHHHHC...SEEEE-SSSHHHHHHHHHS..HCCC--TT-EEEE-S--- CS
  NAD_binding_2   4 fiGlGvMGsnmalnllk.agykvavynrtkekveelvaegakaaesieelvasl...dvvitmvkagkavdevieg..llealkkgdilidgstss 93 
                    ++GlG +G++ al+l++  g++++   rt+  ++   + g k +    +l ++l   +++++ ++ +++++++i++  l++   ++ +l++ +  +
     CCD26118.2 199 VLGLGSIGKHVALKLQDgLGMDIHYCKRTE-DLQVKEKYGWKFHPLDDSLYSQLfqfKAIVVALPGTAETKHLINEkfLAHCDGPELVLVNLGRGQ 293
                    78*************862699***999994.44444555655555555666666666*******************98666666777777777766 PP

                    HHHHHHHHHHHHHTT- CS
  NAD_binding_2  94 pedtrelakelkekgl 109
                    + d   ++++ +e +l
     CCD26118.2 294 ILDIDAVTTAFEEGQL 309
                    6666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2809.12
//
Query:       CCD26119.2  [L=484]
Description: hypothetical protein NDAI_0G03420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.4e-12   44.9  13.4    5.6e-06   26.5   1.9    3.0  2  zf-C2H2      Zinc finger, C2H2 type
    9.4e-09   35.4  10.5    0.00053   20.6   1.1    2.7  2  zf-C2H2_4    C2H2-type zinc finger
      3e-07   30.5   4.2     0.0044   17.3   0.4    2.6  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
    1.4e-06   28.5  13.4    1.7e-05   25.1   3.4    3.6  3  zf-H2C2_2    Zinc-finger double domain
    3.9e-05   23.9   9.3     0.0042   17.4   1.1    3.0  3  zf-met       Zinc-finger of C2H2 type
    6.2e-05   22.9  10.2    0.00084   19.3   0.9    2.7  2  zf-C2H2_6    C2H2-type zinc finger
     0.0024   17.9   3.7        0.4   10.8   0.4    2.9  2  zf-BED       BED zinc finger
     0.0049   17.1   2.0      0.015   15.6   2.0    1.8  1  zf-Di19      Drought induced 19 protein (Di19), zinc-binding
  ------ inclusion threshold ------
      0.026   14.9   5.7        1.1    9.6   0.4    2.7  2  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
      0.044   14.3   2.3        1.9    9.0   0.1    3.2  3  DUF2115      Uncharacterized protein conserved in archaea (DU
       0.25   11.3   2.6        4.7    7.2   0.3    2.6  2  zf-LYAR      LYAR-type C2HC zinc finger
       0.27   11.0   9.0          1    9.2   0.8    2.9  2  zf-H2C2_5    C2H2-type zinc-finger domain
       0.48   10.1   4.2        5.8    6.6   0.2    2.5  2  DUF2225      Uncharacterized protein conserved in bacteria (D
       0.59   10.6   8.8        1.2    9.7   0.3    3.5  3  zf-C2HE      C2HE / C2H2 / C2HC zinc-binding finger
       0.86    8.1   7.2        4.2    5.8   0.6    2.5  2  DUF629       Protein of unknown function (DUF629)
        1.1    9.1   8.0       0.75    9.6   0.1    2.5  2  GAGA         GAGA factor


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   4.0   7.8e-08   8.8e-05       2      23 .]     414     436 ..     413     436 .. 0.95
   2 !   26.5   1.9     5e-09   5.6e-06       1      23 []     442     464 ..     442     464 .. 0.99

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 7.8e-08
                 EETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                  C++C+++F+r++++krHirt H
  CCD26119.2 414 LCTICSRRFRRQEHMKRHIRTiH 436
                 5********************99 PP

  == domain 2  score: 26.5 bits;  conditional E-value: 5e-09
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y+C +C k+F+r++nL++H+rtH
  CCD26119.2 442 YTCYVCEKTFSRSDNLNQHLRTH 464
                 9*********************9 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   2.6   1.6e-06    0.0017       1      24 []     413     436 ..     413     436 .. 0.95
   2 !   20.6   1.1   4.7e-07   0.00053       1      23 [.     442     464 ..     442     465 .. 0.96

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.6e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkthH 24 
                 f C+iC+++F+++++++rH++t H
  CCD26119.2 413 FLCTICSRRFRRQEHMKRHIRTIH 436
                 78*******************988 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 4.7e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 ++C +C k+Fs++++L++Hl+th
  CCD26119.2 442 YTCYVCEKTFSRSDNLNQHLRTH 464
                 89********************9 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.3   4.3e-05     0.048       1      23 [.     412     434 ..     412     434 .. 0.92
   2 !   17.3   0.4   3.9e-06    0.0044       2      24 ..     442     464 ..     441     464 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 4.3e-05
                  ECBBTTTTBBBSSHHHHHCCTTS CS
  zf-C2H2_jaz   1 qfYCvlCdKyFksenaldnHlkS 23 
                  qf C +C++ F  ++ ++ H+++
   CCD26119.2 412 QFLCTICSRRFRRQEHMKRHIRT 434
                  677******************96 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 3.9e-06
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  + C +C+K+F+ + +l +Hl+++
   CCD26119.2 442 YTCYVCEKTFSRSDNLNQHLRTH 464
                  88******************986 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.1      0.22   2.4e+02      11      25 ..     409     423 ..     407     424 .. 0.87
   2 !   25.1   3.4   1.5e-08   1.7e-05       2      25 ..     428     452 ..     427     453 .. 0.91
   3 ?    6.2   0.4     0.014        15       1      10 [.     456     465 ..     456     476 .. 0.86

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.22
   zf-H2C2_2  11 gekpyeCplCdkaFk 25 
                 g k + C  C+ +F 
  CCD26119.2 409 GSKQFLCTICSRRFR 423
                 67899*******995 PP

  == domain 2  score: 25.1 bits;  conditional E-value: 1.5e-08
   zf-H2C2_2   2 LrrHirk.HtgekpyeCplCdkaFk 25 
                  +rHir+ H +e+py+C +C k+F+
  CCD26119.2 428 MKRHIRTiHFQERPYTCYVCEKTFS 452
                 79****77****************8 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.014
   zf-H2C2_2   1 nLrrHirkHt 10 
                 nL++H+r+Ht
  CCD26119.2 456 NLNQHLRTHT 465
                 8********9 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       8.6   9.6e+03       9      17 ..     173     181 ..     172     182 .. 0.79
   2 !   11.3   0.2   0.00032      0.36       3      21 ..     415     433 ..     413     434 .. 0.92
   3 !   17.4   1.1   3.8e-06    0.0042       1      22 [.     442     463 ..     442     465 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 8.6
      zf-met   9 tfnsesqlk 17 
                 t+ns +++ 
  CCD26119.2 173 TCNSIKNYS 181
                 899998885 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00032
      zf-met   3 CelCnvtfnsesqlksHlq 21 
                 C +C ++f  + ++k H +
  CCD26119.2 415 CTICSRRFRRQEHMKRHIR 433
                 *****************86 PP

  == domain 3  score: 17.4 bits;  conditional E-value: 3.8e-06
      zf-met   1 fyCelCnvtfnsesqlksHlqG 22 
                 ++C +C +tf+   +l++Hl+ 
  CCD26119.2 442 YTCYVCEKTFSRSDNLNQHLRT 463
                 89******************96 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   2.6    0.0047       5.3       2      14 ..     413     425 ..     412     434 .. 0.81
   2 !   19.3   0.9   7.5e-07   0.00084       2      24 ..     442     464 ..     442     466 .. 0.95

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0047
   zf-C2H2_6   2 heCsvCsksFpsl 14 
                 + C++Cs++F+ +
  CCD26119.2 413 FLCTICSRRFRRQ 425
                 78********998 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 7.5e-07
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksH 24 
                 + C vC k+F+  ++L+ H+++H
  CCD26119.2 442 YTCYVCEKTFSRSDNLNQHLRTH 464
                 78********************* PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.2    0.0051       5.7      11      43 ..     407     436 ..     403     437 .. 0.85
   2 !   10.8   0.4   0.00035       0.4      18      41 ..     443     463 ..     438     473 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0051
                 -GGSS--EETTTTEE----SSTHHHHHHHHHS- CS
      zf-BED  11 slkeqkavCryCgkilsrgggttnLkrHLrrkH 43 
                 +  ++   C +C + + r     ++krH+r+ H
  CCD26119.2 407 PDGSKQFLCTICSRRFRRQ---EHMKRHIRTIH 436
                 55667778**********9...********988 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00035
                 EETTTTEE----SSTHHHHHHHHH CS
      zf-BED  18 vCryCgkilsrgggttnLkrHLrr 41 
                 +C  C+k++sr+    nL +HLr+
  CCD26119.2 443 TCYVCEKTFSRS---DNLNQHLRT 463
                 7**********8...888888854 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   2.0   1.3e-05     0.015       2      52 ..     412     464 ..     409     466 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.3e-05
     zf-Di19   2 sftCPyCgkelt.vkeLveHvedeHrveskevvCPvCaekvtk..dlvaHltle 52 
                 +f C  C++ +  ++ + +H+ + H +e +++ C vC+++ ++  +l +Hl+++
  CCD26119.2 412 QFLCTICSRRFRrQEHMKRHIRTIHFQE-RPYTCYVCEKTFSRsdNLNQHLRTH 464
                 799******8651566889******876.6789*****99663349*****876 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.7    0.0057       6.3      49      72 ..     411     434 ..     407     442 .. 0.85
   2 ?    9.6   0.4     0.001       1.1      51      73 ..     442     464 ..     434     474 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0057
   zf-C2H2_2  49 ekleClyCekefkslealreHmkk 72 
                 +++ C +C+++f+ +e+++ H+++
  CCD26119.2 411 KQFLCTICSRRFRRQEHMKRHIRT 434
                 5689*****************986 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.001
   zf-C2H2_2  51 leClyCekefkslealreHmkkk 73 
                 ++C++Cek+f+  ++l++H++++
  CCD26119.2 442 YTCYVCEKTFSRSDNLNQHLRTH 464
                 68*****************9875 PP

>> DUF2115  Uncharacterized protein conserved in archaea (DUF2115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       2.1   2.4e+03      47      99 ..      16      69 ..       5      78 .. 0.59
   2 ?    9.0   0.1    0.0017       1.9      15     109 ..     105     203 ..      95     204 .. 0.89
   3 ?    3.0   0.0      0.11   1.3e+02      30     118 ..     363     449 ..     351     451 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 2.1
     DUF2115 47 lteylfeaykelkn.krsgdkseykeevideeelkeflemleeqceeekeekee 99
                +++ + +++ +l + +++ ++++ ++++ ++ + + + +++++ c++++e  ++
  CCD26119.2 16 FANLFQQNLIQLGQeSHHVSQNDGTRSTNNDRSDSTYEDRIDKFCTQSDEAFRT 69
                555555555556554444555555555555556667778888888887776444 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0017
     DUF2115  15 kisieDlmkisarlekeikklpekyrkelseslteylfeaykelkn.krsgdkseykeevideeelkeflemleeqceeekeek...eerlrklyylvs 109
                  is++D  +i ++l+ +++ +p++   +l    +++ f+ +++  n k+s++++++++e+  +++++ +++ ++++ +++k++    +e++ ++ +l+s
  CCD26119.2 105 YISNYDAGSIDQKLNLDMDFVPKSLDMDLGLGGFDFDFNLVNDSNNtKSSSNSNNNSNETPLTTNVSTTCNSIKNYSTNNKQDVplvSESIDNFQRLIS 203
                 6899*****************************************9888888888889999999************99999876888788888877776 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.11
     DUF2115  30 keikklpekyrkelseslteylfeaykelknkrsgdkseykeevideeelkeflemleeqceeekeekeerlrklyylvslYliFvlee 118
                 ke+++++ + +++++e++   +   ++ + ++r +      ++ i ++  k+fl ++ +   +++e++++++r++ +   +Y+ +v e+
  CCD26119.2 363 KELRSISLSPKSTFRERFSGPISIPIQPINSNRPKPR--GRKPSIVPDGSKQFLCTICSRRFRRQEHMKRHIRTIHFQERPYTCYVCEK 449
                 5566666666777777777777777777877444444..44466777778999999999999999999******************987 PP

>> zf-LYAR  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.057        64       1      18 [.     413     431 ..     413     433 .. 0.78
   2 ?    7.2   0.3    0.0042       4.7       1      18 [.     442     460 ..     442     462 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.057
     zf-LYAR   1 fsCiDCsktFdg.deykaH 18 
                 f C  Cs +F++ +  k H
  CCD26119.2 413 FLCTICSRRFRRqEHMKRH 431
                 66999*******5556666 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0042
     zf-LYAR   1 fsCiDCsktFdg.deykaH 18 
                 ++C  C ktF++ d+ ++H
  CCD26119.2 442 YTCYVCEKTFSRsDNLNQH 460
                 89**********9999998 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.8     0.019        21      16      24 ..     428     436 ..     424     437 .. 0.91
   2 ?    9.2   0.8   0.00091         1      12      25 ..     453     465 ..     452     466 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.019
   zf-H2C2_5  16 LkRHlrrkH 24 
                 +kRH+r++H
  CCD26119.2 428 MKRHIRTIH 436
                 9*******9 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00091
   zf-H2C2_5  12 wksnLkRHlrrkHt 25 
                 +++nL++Hlr +Ht
  CCD26119.2 453 RSDNLNQHLR-THT 465
                 689*******.**8 PP

>> DUF2225  Uncharacterized protein conserved in bacteria (DUF2225)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.5     0.019        22       4      29 ..     411     436 ..     409     440 .. 0.89
   2 ?    6.6   0.2    0.0052       5.8       3      34 ..     439     470 ..     437     473 .. 0.90

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.019
     DUF2225   4 kkieCPvCeekfkkkkvkssslrlik 29 
                 k+  C +C+++f +++  ++++r+i 
  CCD26119.2 411 KQFLCTICSRRFRRQEHMKRHIRTIH 436
                 8999*******************985 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0052
     DUF2225   3 kkkieCPvCeekfkkkkvkssslrlikrdsdl 34 
                 ++ ++C vCe++f +    +++lr+  r++++
  CCD26119.2 439 ERPYTCYVCEKTFSRSDNLNQHLRTHTRNYEV 470
                 6789**********************999986 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1         7   7.9e+03       8      32 ..     315     340 ..     314     358 .. 0.58
   2 ?    4.9   0.5     0.032        36      36      60 ..     411     434 ..     409     439 .. 0.84
   3 ?    9.7   0.3    0.0011       1.2      35      63 ..     439     466 ..     435     467 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 7
     zf-C2HE   8 ledlpeelekdgei.eslseeqskel 32 
                 ++d++ +le+ + + +  ++e+s+++
  CCD26119.2 315 WSDFATKLEEGNGKnTPVKKENSDNI 340
                 66777777665533244444444443 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.032
     zf-C2HE  36 tpLkCtrCganfgnkfpkLKeHLee 60 
                 +++ Ct C+ + ++   ++K+H+ +
  CCD26119.2 411 KQFLCTICS-RRFRRQEHMKRHIRT 434
                 5789*****.888999******975 PP

  == domain 3  score: 9.7 bits;  conditional E-value: 0.0011
     zf-C2HE  35 ktpLkCtrCganfgnkfpkLKeHLeeefe 63 
                 ++p +C  C+ + ++   +L +HL ++ +
  CCD26119.2 439 ERPYTCYVCE-KTFSRSDNLNQHLRTHTR 466
                 6899******.666667*********976 PP

>> DUF629  Protein of unknown function (DUF629)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   1.1    0.0053       5.9      57      82 ..     413     438 ..     410     442 .. 0.90
   2 ?    5.8   0.6    0.0037       4.2      57      85 ..     442     469 ..     438     473 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0053
      DUF629  57 WvCrtCsekfsdaeeckqHlvqeHva 82 
                 + C +Cs++f   e++k H+   H +
  CCD26119.2 413 FLCTICSRRFRRQEHMKRHIRTIHFQ 438
                 78*******************99987 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0037
      DUF629  57 WvCrtCsekfsdaeeckqHlvqeHvaklk 85 
                 ++C+ C+++fs +++ +qHl + H ++++
  CCD26119.2 442 YTCYVCEKTFSRSDNLNQHL-RTHTRNYE 469
                 79*****************8.57888876 PP

>> GAGA  GAGA factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   5.4      0.76   8.5e+02      27      50 ..     415     438 ..     410     440 .. 0.93
   2 ?    9.6   0.1   0.00067      0.75      22      45 ..     439     462 ..     438     468 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.76
                 -TTT--EESSHHHHHHHHHHHTTT CS
        GAGA  27 CPiCqAviRqsRnLRRHLELRHFk 50 
                 C iC    R    ++RH+   HF+
  CCD26119.2 415 CTICSRRFRRQEHMKRHIRTIHFQ 438
                 9*********************97 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00067
                 S--EE-TTT--EESSHHHHHHHHH CS
        GAGA  22 EqPAtCPiCqAviRqsRnLRRHLE 45 
                 E P tC +C      s nL  HL 
  CCD26119.2 439 ERPYTCYVCEKTFSRSDNLNQHLR 462
                 89********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1346  (0.0750739); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 3262.36
//
Query:       CCD26120.2  [L=242]
Description: hypothetical protein NDAI_0G03430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-23   81.8   0.7    3.2e-23   81.8   0.7    2.7  2  Mnd1      Mnd1 HTH domain
    1.4e-07   31.5   0.8    1.4e-07   31.5   0.8    2.4  2  LZ3wCH    Leucine zipper with capping helix domain
  ------ inclusion threshold ------
       0.12   12.5   4.0       0.13   12.4   1.9    2.1  2  Med9      RNA polymerase II transcription mediator complex su


Domain annotation for each model (and alignments):
>> Mnd1  Mnd1 HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.7   5.4e-27   3.2e-23       1      60 []      38      99 ..      38      99 .. 0.98
   2 ?    0.0   1.3      0.18   1.1e+03      15      49 ..     160     193 ..     158     194 .. 0.83

  Alignments for each domain:
  == domain 1  score: 81.8 bits;  conditional E-value: 5.4e-27
        Mnd1  1 ileifqeskefytlKeleklapk.ekgivs.qsVkdvlqsLvdDglveveKiGssnvyWsFp 60
                il+++q+++++ytlKelekl+pk +k+i++   Vkd+++sL+dD+l+++eK+G++n+ W+F+
  CCD26120.2 38 ILTFLQSTYSYYTLKELEKLIPKnCKSISNgILVKDLIKSLLDDDLIHMEKCGNINIIWCFK 99
                799*************************9989*****************************7 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.18
        Mnd1  15 KeleklapkekgivsqsVkdvlqsLvdDglveveK 49 
                 +el+ l  k  ++++++V ++ +   dD++++ eK
  CCD26120.2 160 RELKELDDK-LKVSKNNVMELEKFKWDDERISLEK 193
                 677777778.7899999999999999999999998 PP

>> LZ3wCH  Leucine zipper with capping helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1      0.98   5.9e+03      29      37 ..     118     126 ..     111     135 .. 0.58
   2 !   31.5   0.8   2.4e-11   1.4e-07      21      52 ..     207     238 ..     191     240 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.98
      LZ3wCH  29 swikekfpk 37 
                 + +ke + k
  CCD26120.2 118 QVCKEEYSK 126
                 345555554 PP

  == domain 2  score: 31.5 bits;  conditional E-value: 2.4e-11
      LZ3wCH  21 tdnifdikswikekfpkskkelneefgIetDe 52 
                 tdni  ++s+ ++kf ++ k++++efgI++D+
  CCD26120.2 207 TDNIEILVSYLSNKFLIDSKQIRKEFGIPEDF 238
                 88*****************************9 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.79   4.7e+03      31      47 ..     113     129 ..     111     134 .. 0.68
   2 ?   12.4   1.9   2.2e-05      0.13       9      65 ..     143     206 ..     141     220 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.79
        Med9  31 lrhkLkkarelirelpg 47 
                 l   L+ ++e  ++l++
  CCD26120.2 113 LESSLQVCKEEYSKLEN 129
                 55567778887777764 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.2e-05
        Med9   9 ilksiekdpnlsskdletktgelrhkLkkarelirelpg.......idrsveeqeaeieeleeq 65 
                 i+ + +++ +l   d+  ++ el +kLk  ++ ++el+        i+  +ee ++ i+ le+ 
  CCD26120.2 143 IIDDGNNGGKLKRDDCLRELKELDDKLKVSKNNVMELEKfkwdderISLEKEEKLKDINRLEKL 206
                 6666677778899999*********************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1361  (0.0759105); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1749.71
//
Query:       CCD26121.2  [L=425]
Description: hypothetical protein NDAI_0G03440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-30  105.7   1.3    2.1e-30  105.2   0.0    2.0  2  ArfGap    Putative GTPase activating protein for Arf
  ------ inclusion threshold ------
      0.048   13.6   0.0       0.14   12.1   0.0    1.9  1  UBA       UBA/TS-N domain
        1.6    8.6  26.1        2.6    8.0  26.1    1.3  1  TFIIA     Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.0   3.6e-34   2.1e-30       2     114 ..      38     156 ..      37     159 .. 0.94
   2 ?   -2.7   0.4         1   6.1e+03      92     106 ..     349     363 ..     337     373 .. 0.44

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 3.6e-34
                 HHHHHHCCSCCCC.B-TTT-SBS--EEETTTTEEE-HHHHHHHCCS......TTT--EEETTTS---HHHHHHHH.HTCHHHHHHHHTTTC-TTTSG-T CS
      ArfGap   2 kalkellkepenk.vCaDCgakeptWaslnlgvflCieCsgvHrsl.....gvhiskvrsltldkwedeelellk.algNkkaneileaklpkeekrsk 93 
                 ++lk+ll+ pen+ +C +Cg++ ptW+slnlg+flC +C++vHr++     +  +sk++sl+ld+w d++++ +   +gNk +n++++ k ++ + + +
  CCD26121.2  38 SELKDLLNAPENSnKCGECGSAYPTWCSLNLGIFLCGRCASVHRKIlnnreDDVFSKIKSLSLDRWYDDDIDSFSkLGGNKGNNQFWNPKREPFPFD-G 135
                 5799******9988********************************999988899*****************9986789************999999.* PP

                 TCGHHHHHHHHHHHHTCHTTC CS
      ArfGap  94 ssskekreefirakYeekkfa 114
                 +++k+ +e+fir+kY   kf+
  CCD26121.2 136 DDDKSIVEHFIRDKYIVGKFR 156
                 ***************998886 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1
                 -TTCGHHHHHHHHHH CS
      ArfGap  92 skssskekreefira 106
                 ++++++++ +++++a
  CCD26121.2 349 QQQQQQQQQQHVLQA 363
                 223333333333333 PP

>> UBA  UBA/TS-N domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.4e-05      0.14       2      37 .]     205     242 ..     204     242 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.4e-05
                 CHHHHHHHHHTTS-HH..HHHHHHHHTTTSHHHHHHHH CS
         UBA   2 deeaiqrLveMGFdre..evveALratgnNeErAveyL 37 
                 ++ ++++L +MG+  +  ++++ L++t++N++  +++L
  CCD26121.2 205 YSRQLEELRDMGYNSNisRIKDTLERTHGNINKTIDIL 242
                 789**********988899**************99987 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  26.1   0.00043       2.6      91     220 ..     290     419 ..     225     424 .. 0.41

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00043
       TFIIA  91 pslvipagksvqsltanssaataatfslpakleppvqipagvtlqtasg.............qlykvnv...qasgaqqiaaqplqqvvqq..sqgsaa 171
                 +++v++ +  +                            + v +qta               q y   +      ++q+++a +lqq++qq  +q+++ 
  CCD26121.2 290 QPAVFDGSTDI---------------------------ASLVAQQTAAVgagaaglvpgsvqQYYDPATgmiYVDQQQYMLAMQLQQQQQQqqQQQHVL 361
                 12222222222...........................2222222222222222222222322222222334556667777777777733211222222 PP

       TFIIA 172 qssvaalqaqsqqaqalaepqqqlekq...............qqqqqqqqqqqqqqqvqqqqqe 220
                 q   a+lq+q+q+  ++ ++ qq                   +++q qq   +qqqq+qqq+q+
  CCD26121.2 362 Q---AQLQQQQQAVPQMGMQFQQ---VptglpiiyngvqifpNNPQYQQLLMLQQQQQQQQKQQ 419
                 2...2333333333444444444...13457888888888774444555544444433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3064  (0.170896); expected 358.6 (0.02)
Passed bias filter:                      858  (0.0478554); expected 358.6 (0.02)
Passed Vit filter:                       102  (0.00568911); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.27s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 3005.05
//
Query:       CCD26122.2  [L=948]
Description: hypothetical protein NDAI_0G03450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      1e-86  290.4  11.7    3.2e-86  288.8  11.7    1.9  1  DUF3543      Domain of unknown function (DUF3543)
    7.1e-56  189.5   0.8    1.9e-55  188.1   0.1    2.2  2  Pkinase      Protein kinase domain
    5.5e-43  147.1   0.0    1.1e-42  146.2   0.0    1.4  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> DUF3543  Domain of unknown function (DUF3543)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.8  11.7   5.4e-90   3.2e-86       3     251 .]     669     945 ..     667     945 .. 0.86

  Alignments for each domain:
  == domain 1  score: 288.8 bits;  conditional E-value: 5.4e-90
     DUF3543   3 edtklletleelaakadvvyefAevKfkqliPlapsskeglgaeeaks............esnsssaiedeeltpeaivslseealvLYvkalsllaka 89 
                 +++k++++le+l+a+a+vvy+fAevKf q+iP+++s+++++++++a +            ++ ++++ +d++++++++++l++ea+vLY+k+l++lak+
  CCD26122.2 669 DTNKITHILESLSARAFVVYSFAEVKFLQVIPMKKSQQRSSNGSSAIQeeeegeeadlrdANGNNNNDTDNKFSIKELKHLCTEAIVLYMKTLEILAKS 767
                 5689*******************************9999888877555445566655554333344445555*************************** PP

     DUF3543  90 mdiaskwWkkknakkgekvvslrlnevvqwirerFnevleKaefvrlklqeaqkqlpedhp......e......saes..sseevslsegvtaekLiYD 174
                 m+i+skwW+++n    ek +slrln +vqwirerFne+leKa+++rlkl +++++ +++++      +      +  +  ++e+++++e+v++ekL+YD
  CCD26122.2 768 MKITSKWWYESN----EKICSLRLNLLVQWIRERFNECLEKADYLRLKLDDVTTNKQDQEKgnddseDedendnD--NvsEKETTDTDEDVVLEKLLYD 860
                 ***********9....9************************************9999888888776515555433..24699999************** PP

     DUF3543 175 rAlemSraAAvnEltgedlkgCelaYetaiwmLealldedeeeenkkee........eldeeDrkviekliksiknRLkalrkkl 251
                 rAle+S+ AA++El+ge+l +Cel+Y+ta+wmLe+ l+ ++   +++++        +lde+Dr +i+k+++si++RLkalr++l
  CCD26122.2 861 RALEISKDAATMELNGENLYNCELSYATALWMLETTLEPNNAVIENARDhaddqtyeVLDEQDRIIIKKYMDSIATRLKALRSRL 945
                 *************************************76665555444456667777*************************985 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.1   0.1   3.2e-59   1.9e-55       1     261 [.      37     343 ..      37     346 .. 0.87
   2 ?   -2.6   0.1      0.45   2.7e+03     183     225 ..     588     630 ..     587     669 .. 0.69

  Alignments for each domain:
  == domain 1  score: 188.1 bits;  conditional E-value: 3.2e-59
                 EEEEEEEEEESSEEEEEEEETTTTEE.........EEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgki.........vAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladll 89 
                 y  ++++G+Gsf++V +a+  +++ +         +A+K+++++k k+kk  +++  Ei+ilkk++hp+iv+l+++ ++++++yl++ey+  g+l+ l+
  CCD26122.2  37 YMIDKEIGKGSFATVHRAHLLRKQIKddltspplnFAIKIVSRSKLKNKKLlENLEIEIAILKKINHPHIVKLIDCERTTTDFYLIMEYCALGDLTFLI 135
                 66789**********988754444222223333449**********999999*********************************************** PP

                 H.HHSS--HH.......................HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET...........TTE...........EEE-SG CS
     Pkinase  90 e.rkgslsee.......................eakkiakqilegleylHskgiiHrDlKpeNiLide...........kge...........lKitDF 142
                 + r+  ++++                        + ++++q++++l++l sk+++HrD+Kp+N+L+ +           k +           lKi+DF
  CCD26122.2 136 KkRHELIKNHpllekifekypspnenynglhraFILNYLQQLASALKFLRSKNLVHRDIKPQNLLLLTplinyndskafK-KlgfigiyelpiLKIADF 233
                 954444666688888999999999****99987788*****************************997788887766651.055666677789****** PP

                 TTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHH CS
     Pkinase 143 GlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdll 241
                 G+a+ l ++s +++ +g++ Y+APE+l++++y +k+D+Ws+G +lye+ +g+ppf+++++ e ++k+ +          ++k ++p+  +i++++k l+
  CCD26122.2 234 GFARFLPNTSMAETLCGSPLYMAPEILNYQKYNAKADLWSVGTVLYEMCYGTPPFKASNHLELYKKIKRS---------NNKINFPNYIQIQNDMKILI 323
                 ********************************************************88888877777776.........77999*************** PP

                 HHHT-SSGCCSTTHHHHHTS CS
     Pkinase 242 kkllkkdpkkRltaeellqh 261
                 +kll+ dp++R+ ++e  ++
  CCD26122.2 324 SKLLTFDPQRRIEFDEFFNN 343
                 ************99998775 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.45
                 HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH. CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvekeldqlekilkilgetke 225
                 +Gv   +l+  ++ f+ +k+++++++e +ql+++  + +   +
  CCD26122.2 588 IGVASTKLFGTTTNFNTTKNQTQQQQEQQQLQATPYLSNSFAL 630
                 6777777877888888777777777777776666555554444 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.2   0.0   1.8e-46   1.1e-42       3     255 ..      39     340 ..      37     343 .. 0.90

  Alignments for each domain:
  == domain 1  score: 146.2 bits;  conditional E-value: 1.8e-46
                  EEEEEEEESSEEEEEEEEET.....TTTSSEEEEEEEEESTTSSHHH..HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg.....ekekkevkVavKtlkeeateee..keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLr 93 
                  ++k++G+G+f++V++++l +     + ++  ++ a+K++++++ +++   e+l  e++i+kk++hp+ivkl+ +   +   ++++ey++ GdL   ++
   CCD26122.2  39 IDKEIGKGSFATVHRAHLLRkqikdDLTSPPLNFAIKIVSRSKLKNKklLENLEIEIAILKKINHPHIVKLIDCERTTTDFYLIMEYCALGDLTFLIK 136
                  6799*************9887776666778899******7655444324678888**************************************98888 PP

                  HT......................CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.....................TTEEEE-STT CS
  Pkinase_Tyr  94 kk......................ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.....................nkvvkisDfG 148
                  k+                      + + l+   +l++ +q+A+++++L sk+lvHrd+  +N Ll +                       + ki+DfG
   CCD26122.2 137 KRheliknhpllekifekypspneNYNGLHRAFILNYLQQLASALKFLRSKNLVHRDIKPQNLLLLTplinyndskafkklgfigiyeLPILKIADFG 234
                  88********************98889999999*******************************9999******************9778******** PP

                  THEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEES-BBTT..SBHHHHHHHHHHT- CS
  Pkinase_Tyr 149 LardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevlekl.kegkrlekpek..cpeelyelmkkcwe 243
                   ar +    +++++e+   +  +mapE+l+++k++ k+D Ws G++l+E++  g  p++  ++ e+++k+ +++++++ p++  ++++++ l++k ++
   CCD26122.2 235 FARFL---PNTSMAETLCGSPLYMAPEILNYQKYNAKADLWSVGTVLYEMCY-GTPPFKASNHLELYKKIkRSNNKINFPNYiqIQNDMKILISKLLT 328
                  *****...66666677777778***************************998.*****************666777888876216799********** PP

                  SSGGGS--HHHH CS
  Pkinase_Tyr 244 edpeeRptfsel 255
                   dp++R +f e 
   CCD26122.2 329 FDPQRRIEFDEF 340
                  *********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (948 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2034  (0.113447); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.27s 00:00:01.08 Elapsed: 00:00:00.63
# Mc/sec: 4563.43
//
Query:       CCD26123.2  [L=120]
Description: hypothetical protein NDAI_0G03460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-17   61.7   0.0    6.5e-17   61.4   0.0    1.1  1  SRP1_TIP1  Seripauperin and TIP1 family


Domain annotation for each model (and alignments):
>> SRP1_TIP1  Seripauperin and TIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   3.7e-21   6.5e-17       6      95 ..      26     119 ..      22     120 .] 0.93

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 3.7e-21
   SRP1_TIP1   6 aqteaevaelevllnDvksnlkeYlslaka.nsgfs...lPsgvlsvyaalatatddsYttllseidfaevssmitglPWYssRLepaiesala 95 
                 + t+  ++el+v+++D+k++l++Y+ l      gfs   + +g+l++  al   t++  + +  +id+a +++ i +lPWY  RLepai++al+
  CCD26123.2  26 DYTHPHIVELTVIFEDIKTHLNDYIPLCFLpGTGFSlfnIQKGILDITIALSILTESAISAVCRDIDYALIHACIIKLPWYAHRLEPAINAALQ 119
                 5577899********************998777887888****************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 888.16
//
Query:       CCD26124.2  [L=826]
Description: hypothetical protein NDAI_0G03470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-57  194.9   0.0    2.8e-57  194.1   0.0    1.4  1  Pkinase         Protein kinase domain
    7.5e-28   97.5   0.0    1.3e-27   96.8   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
      9e-06   24.7   0.2    3.2e-05   22.9   0.1    1.9  1  Pkinase_fungal  Fungal protein kinase
    1.1e-05   25.0   0.0    6.8e-05   22.3   0.0    2.2  2  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.022   14.7   0.0      0.037   13.9   0.0    1.3  1  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.1   0.0   7.8e-61   2.8e-57       1     264 []      86     393 ..      86     393 .. 0.86

  Alignments for each domain:
  == domain 1  score: 194.1 bits;  conditional E-value: 7.8e-61
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH........HHHHHHHHHHHHHSCTTB--EEEEEEE..SSEEEEEEE--TTEBHHHHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke........kkvlrEikilkklkhpnivrlyevfee..kdelylvleyveggeladll 89 
                 ye ++ lG+G+ GkV  a++++tg+ vA+K++++ +++  +         +++ +Ei+i+kk++h++iv+l+e++ +  ++++ylvley+++ge++   
  CCD26124.2  86 YEIIKDLGTGQHGKVKLAKDTRTGELVAIKIVNRYEKRRHSLtpnaqsslDRIKKEIAIMKKCNHEHIVKLIEILDDlkSRKIYLVLEYCKKGEIKWCP 184
                 78899****************************998887766788999999*************************998999************88887 PP

                 HHHSS--HH........HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.......BCTTTSCGGGS-HHHH.... CS
     Pkinase  90 erkgslsee........eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.......ltsfvgtseYlAPEvl.... 169
                 +++  ++++        +a++i++ ++ gle lH++giiHrD+Kp+N+Lid+++++Ki+DFG++  ++ s +       lt+ vgt+ + +PE+     
  CCD26124.2 185 REQLEIDSAgppqmsfqRAREILRDVILGLECLHHQGIIHRDIKPANLLIDHDDVVKISDFGVSLAATGSIDnnddeleLTKTVGTPVFFSPEIClgte 283
                 76555665566666666***********************************************999998888999******************99999 PP

                 ............TT.SCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT..HHHHHHHCTSHH...HHHTTS..-HHHHHHHHHHT-SSGCC CS
     Pkinase 170 ............ke.neyskkvDvWslGvilyelltgkppfsgekgkekvekeldq..lekilkilgetkeklpeasei..seeakdllkkllkkdpkk 251
                             ++ + +s k+D+W+lG++ly+ll+gk pf +e + + + k++++  ++  +++l++++  + +  ++   e akdll++ll+k+p++
  CCD26124.2 284 aiekfnlerssfSNvSCISFKIDIWALGITLYCLLFGKLPFVSEFELKLFDKIVNDpvTFPDFEVLQNNN--ISNIASFeeYELAKDLLERLLDKNPTS 380
                 9888888766553335569***********************9999999999999944333445554333..3333333336789************** PP

                 STTHHHHHTSGGG CS
     Pkinase 252 Rltaeellqhpyl 264
                 R++++++++hp++
  CCD26124.2 381 RISIQDIKKHPFV 393
                 ***********96 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   3.5e-31   1.3e-27       3     208 ..      88     326 ..      86     390 .. 0.79

  Alignments for each domain:
  == domain 1  score: 96.8 bits;  conditional E-value: 3.5e-31
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST.........TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE..SSSSEEEEEE--TTEBHH CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlke.........eateeekeelleeakimkklkhpnivkllgvct..keepllivteyvkgGdLl 89 
                  + k+lG G+ GkV  ++ +    ++ + Va+K++++          + +++ +++ +e++imkk++h++ivkl+ +    k++++++v+ey+k+G+++
   CCD26124.2  88 IIKDLGTGQHGKVKLAKDT----RTGELVAIKIVNRyekrrhsltPNAQSSLDRIKKEIAIMKKCNHEHIVKLIEILDdlKSRKIYLVLEYCKKGEIK 181
                  7899**********99988....88999*****975222333222223344678899********************9889999************** PP

                  HHHHHT......CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET....TTSSEEEETTSSTSGGGGS-HHHH CS
  Pkinase_Tyr  90 kfLrkk......ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi....ekddeyvkkeeaklpvkWmapEsl 177
                     r++        +++++++  ++  +v  G+e L+++ ++Hrd+   N L+++++vvkisDfG++ +      ++d+  + +++     + +pE+ 
   CCD26124.2 182 WCPREQleidsaGPPQMSFQRAREILRDVILGLECLHHQGIIHRDIKPANLLIDHDDVVKISDFGVSLAAtgsiDNNDDELELTKTVGTPVFFSPEIC 279
                  9999999999988999*************************************************986543333444555555555555556667665 PP

                  HHSE.................EEHHHHHHHHHHHHHHHHTTSSGTTTT CS
  Pkinase_Tyr 178 kekk.................ftsksDvWsfGvllwEiftlgespypg 208
                    ++                 ++ k D+W+ G++l+ ++  g+ p+ +
   CCD26124.2 280 LGTEaiekfnlerssfsnvscISFKIDIWALGITLYCLLF-GKLPFVS 326
                  55555667779999*999999999************9987.8888654 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   9.1e-09   3.2e-05     310     387 ..     205     280 ..     185     292 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 9.1e-09
  Pkinase_fungal 310 ealrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDl....akelsddssesgarertGTleFmaievlk 387
                     e lrD+I g++ L+ ++gi+HrDi   N+li      +++   ++D+ +      ++++++ e +  + +GT+ F + e+  
      CCD26124.2 205 EILRDVILGLECLH-HQGIIHRDIKPANLLID-----HDDVVKISDFGVslaaTGSIDNNDDELELTKTVGTPVFFSPEICL 280
                     5689**********.****************9.....455555555443000033333333333448888999998877765 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.32   1.1e+03      20      49 ..      92     121 ..      79     158 .. 0.71
   2 !   22.3   0.0   1.9e-08   6.8e-05     147     252 ..     205     326 ..     198     338 .. 0.69

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.32
  Kinase-like  20 lkkgdrsvvfevkdqetgeplavkvfllps 49 
                  l+ g+ ++v ++kd  tge +a+k+    +
   CCD26124.2  92 LGTGQHGKVKLAKDTRTGELVAIKIVNRYE 121
                  556778888889999999988888765444 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 1.9e-08
  Kinase-like 147 lllTlqlirlaanLqakglvhgkftvdnllldekgglmlggft.aLvragtkvvlseve..........kgfaPpEllgsrgg..ytrk.....nktk 226
                   +l  ++i     L+++g++h ++++ nll d++  +++ +f+ +L   g     +  e          + f+P   lg  +   ++ +     n   
   CCD26124.2 205 EIL-RDVILGLECLHHQGIIHRDIKPANLLIDHDDVVKISDFGvSLAATGSIDN-NDDEleltktvgtpVFFSPEICLGTEAIekFNLErssfsNVSC 300
                  555.445555678*******************9999999998734655555444.3333446656567455555444455544676655111114556 PP

  Kinase-like 227 mthkldaWqlGlviyriwclklPltl 252
                  +++k+d W+lG++ y +   klP+  
   CCD26124.2 301 ISFKIDIWALGITLYCLLFGKLPFVS 326
                  79********************9965 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0     1e-05     0.037     152     187 ..     203     240 ..     157     250 .. 0.72

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1e-05
                 HHHHHHHH--S...SS-EEEE-SS-SGGGEEEC..TTEE CS
         APH 152 vlaalaallpg...elptvllHgDlhpgNllvdpddgrv 187
                 +++ l++  +g     +++++H+D++p Nll+d +d+ v
  CCD26124.2 203 AREILRDVILGlecLHHQGIIHRDIKPANLLID-HDDVV 240
                 444555555556667899***************.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1055  (0.0588432); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.45
# Mc/sec: 5522.93
//
Query:       CCD26125.2  [L=828]
Description: hypothetical protein NDAI_0G03480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-54  179.1  27.5    1.1e-07   31.2   0.1    8.5  8  PUF       Pumilio-family RNA binding repeat
  ------ inclusion threshold ------
      0.092   12.7   0.1       0.24   11.4   0.1    1.6  1  Vta1      Vta1 like


Domain annotation for each model (and alignments):
>> PUF  Pumilio-family RNA binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   8.2e-10   7.4e-06       5      34 ..     186     216 ..     184     217 .. 0.85
   2 !   31.2   0.1   1.2e-11   1.1e-07       1      34 [.     220     253 ..     220     254 .. 0.92
   3 !   25.2   0.1   9.6e-10   8.6e-06       1      32 [.     256     288 ..     256     291 .. 0.81
   4 !   27.8   0.1   1.4e-10   1.3e-06       3      35 .]     301     333 ..     299     333 .. 0.91
   5 !   29.6   0.8   3.7e-11   3.4e-07       3      34 ..     339     370 ..     337     371 .. 0.94
   6 !   20.1   0.1     4e-08   0.00036       2      25 ..     374     397 ..     373     404 .. 0.84
   7 !   20.1   0.4     4e-08   0.00036       2      31 ..     412     442 ..     411     444 .. 0.86
   8 !   14.2   0.1     3e-06     0.027       9      25 ..     478     494 ..     471     498 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8.2e-10
                 GHHHHHTSTTHHHHHHHHHHH.SCHHHHHHH CS
         PUF   5 nlvqLstdqyGnyvvQklleh.ateeqkkli 34 
                 n ++L+tdq+G++++Qk le  a++  ++++
  CCD26125.2 186 NYLKLATDQFGCRFLQKKLESpAESDIVRDL 216
                 679*****************88887776665 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 1.2e-11
                 HHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF   1 sikgnlvqLstdqyGnyvvQkllehateeqkkli 34 
                 +ik+++++L+ d++Gny++Qkl +++t  q+ ++
  CCD26125.2 220 EIKPYFLELILDPFGNYLIQKLCDYLTVDQRTNL 253
                 69***********************999998766 PP

  == domain 3  score: 25.2 bits;  conditional E-value: 9.6e-10
                 HHGGGHHHHHTSTTHHHHHHHHHHH.SCHHHHH CS
         PUF   1 sikgnlvqLstdqyGnyvvQklleh.ateeqkk 32 
                 si +n+ q+s++qyG++ +Q+++++    eq  
  CCD26125.2 256 SIYPNVFQISINQYGTRSLQRIIDTvDNDEQSN 288
                 5889********************955555544 PP

  == domain 4  score: 27.8 bits;  conditional E-value: 1.4e-10
                 GGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH CS
         PUF   3 kgnlvqLstdqyGnyvvQkllehateeqkklil 35 
                 ++ +v+L++d +Gn+v+Qk++ +++++  ++i+
  CCD26125.2 301 IEQIVTLINDLNGNHVIQKCIFKFPPSTFDFII 333
                 6789********************999999886 PP

  == domain 5  score: 29.6 bits;  conditional E-value: 3.7e-11
                 GGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHH CS
         PUF   3 kgnlvqLstdqyGnyvvQkllehateeqkkli 34 
                 ++n+v +st+++G++v+Qkll ++t+ q+++i
  CCD26125.2 339 QNNIVAISTHKHGCCVLQKLLSVCTLDQIFKI 370
                 689*************************9987 PP

  == domain 6  score: 20.1 bits;  conditional E-value: 4e-08
                 HGGGHHHHHTSTTHHHHHHHHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQklleh 25 
                 ++++l  L++dq+Gny++Q ll+ 
  CCD26125.2 374 LIQFLPALINDQFGNYIIQFLLDI 397
                 7788999***************94 PP

  == domain 7  score: 20.1 bits;  conditional E-value: 4e-08
                 HGGGHHHHHTSTTHHHHHHHHHHH.SCHHHH CS
         PUF   2 ikgnlvqLstdqyGnyvvQklleh.ateeqk 31 
                 ++++l+qLs+ ++ ++vv+k++++ ++ + +
  CCD26125.2 412 LSNELCQLSCLKFSSNVVEKFIKKlFSNVRY 442
                 789********************97766555 PP

  == domain 8  score: 14.2 bits;  conditional E-value: 3e-06
                 HHTSTTHHHHHHHHHHH CS
         PUF   9 LstdqyGnyvvQklleh 25 
                 L+ d yGny++Q+ll++
  CCD26125.2 478 LIRDNYGNYALQTLLDV 494
                 789************96 PP

>> Vta1  Vta1 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   2.6e-05      0.24      72     121 ..     424     475 ..     412     495 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 2.6e-05
        Vta1  72 aakayvenfalklfnkadkedragkatkataktflaaatlfe.vlklfg.el 121
                  ++++ve+f+ klf +   +++ ++++++t + + ++++++  ++++f+ +l
  CCD26125.2 424 FSSNVVEKFIKKLFSNVRYQLQMNNIDANTLEVLGTSMNILLsIVDIFTiNL 475
                 5789*********************************986555999998664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1213  (0.0676558); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 5547.44
//
Query:       CCD26126.2  [L=545]
Description: hypothetical protein NDAI_0G03490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 4288.60
//
Query:       CCD26127.2  [L=434]
Description: hypothetical protein NDAI_0G03500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      239  (0.0133304); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.27s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3115.90
//
Query:       CCD26128.2  [L=261]
Description: hypothetical protein NDAI_0G03510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.9e-21   75.0  11.3    1.8e-18   67.4   0.5    3.2  3  Bud13     Pre-mRNA-splicing factor of RES complex
  ------ inclusion threshold ------
      0.012   15.7   0.9      0.028   14.5   0.9    1.7  1  W_rich_C  Tryptophan-rich Synechocystis species C-terminal do
       0.76    9.5   7.2       0.13   12.0   2.5    1.9  2  DUF3492   Domain of unknown function (DUF3492)


Domain annotation for each model (and alignments):
>> Bud13  Pre-mRNA-splicing factor of RES complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   2.1      0.24   1.4e+03      28      48 ..      17      37 ..       5      95 .. 0.60
   2 !   18.9   4.7   2.6e-07    0.0015       1      63 [.     111     174 ..     111     176 .. 0.86
   3 !   67.4   0.5     3e-22   1.8e-18      69     143 ..     164     237 ..     158     240 .. 0.86

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.24
       Bud13 28 eeeekeekkkewgkGlvqkee 48
                ++++k++kk + ++   q ++
  CCD26128.2 17 KKSKKSNKKSTTSSTSSQDRN 37
                222222222222222222222 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 2.6e-07
       Bud13   1 etvyRdktgrkidlee.kreaeaekkkkeeeekeekkkewgkGlvqkeekekrleelekekkkp 63 
                 etv+Rd++g k+++e  +r++++  ++ +e+ ++++ +e+++G+vq +  ++ ++e++++kkk+
  CCD26128.2 111 ETVFRDEKGHKLTRERnERRNKETSEDLREQLRKKRLQEINMGEVQLHWLKNGKSEDSTMKKKE 174
                 7**************97776777777777778899999**********9999999999988886 PP

  == domain 3  score: 67.4 bits;  conditional E-value: 3e-22
       Bud13  69 ddedlneelkekerwdDPmaaflkkkkkkkkkkskkkkpkykgpaappNRfgIkPGyrWDGvdRsnGfEkklfea 143
                 ++ed   + ke  +++DP++ f  ++++++  +s   ++ y+g ++p+NRf I PG rWDGvdRsnGfEkk++ +
  CCD26128.2 164 KSEDSTMKKKEMLKEEDPAMVFDVNEQEDNIPTSLLGRRLYDG-KFPENRFHIVPGPRWDGVDRSNGFEKKWLLK 237
                 4677778889999*********998876666666666999*99.****************************866 PP

>> W_rich_C  Tryptophan-rich Synechocystis species C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.9   4.8e-06     0.028      12      77 ..      30      94 ..      20     119 .. 0.74

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 4.8e-06
    W_rich_C 12 fvqtedetetalknkgqavsndeyggwqalaaEtvnginqvlwkntstnelevWstDsnwnwisse 77
                ++ ++d + ++++++++++ +++ +  +a  + tvng  ++lwkn++tnel   + D+  + i+++
  CCD26128.2 30 STSSQDRNVFNVTESSHQILSNK-KVSKAYRTSTVNGKGKLLWKNVDTNELVEIQDDKATRLIQTN 94
                45566677888999999999999.7788999******************98766666666666554 PP

>> DUF3492  Domain of unknown function (DUF3492)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.13     8e+02      73     107 ..      27      55 ..       6      95 .. 0.55
   2 ?   12.0   2.5   2.2e-05      0.13      54     127 ..     101     177 ..      92     192 .. 0.74

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.13
     DUF3492  73 kapasrkgekaaaetleellealkepeaeseellk 107
                  + + ++++++ ++ +e+ +++l++++       +
  CCD26128.2  27 TTSSTSSQDRNVFNVTESSHQILSNKKV------S 55 
                 2222444455555555555555555542......2 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 2.2e-05
     DUF3492  54 PenVveveevylveeeeaskapasrkgekaaaetleellealkepeaeseellkel.leelaeke...kklsledflk 127
                 P nV+++e++++v + e+ ++++++++e++++et+e l e+l++++ + e  + e+ l+ l++ +   + ++++++lk
  CCD26128.2 101 PRNVTRLESQETVFRDEKGHKLTRERNERRNKETSEDLREQLRKKRLQ-EINMGEVqLHWLKNGKsedSTMKKKEMLK 177
                 9**************99999999*********************9865.44444331222222221024444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2216  (0.123599); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 1938.13
//
Query:       CCD26129.2  [L=1548]
Description: hypothetical protein NDAI_0G03520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-95  316.7   0.1      2e-94  315.6   0.1    1.6  1  XRN_N       XRN 5'-3' exonuclease N-terminus
    1.1e-86  291.6   5.2    1.1e-86  291.6   5.2    3.7  5  XRN_M       Xrn1 helical domain
    1.7e-67  226.9   0.1    1.7e-67  226.9   0.1    2.6  3  XRN1_D1     Exoribonuclease Xrn1 D1 domain
    9.9e-32  109.0   0.0    4.3e-31  107.0   0.0    2.2  1  XRN1_D2_D3  Exoribonuclease Xrn1 D2/D3 domain
      1e-19   70.4   0.1    2.2e-19   69.3   0.1    1.6  1  SH3_12      Xrn1 SH3-like domain
      2e-19   69.4   3.0    2.5e-19   69.1   0.9    2.3  2  Xrn1_D3     Exoribonuclease 1 Domain-3


Domain annotation for each model (and alignments):
>> XRN_N  XRN 5'-3' exonuclease N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.6   0.1   6.6e-98     2e-94       1     242 []       1     227 [.       1     227 [. 0.93

  Alignments for each domain:
  == domain 1  score: 315.6 bits;  conditional E-value: 6.6e-98
                 XXX-HHHHHHHHHSGGGEEE------SSSS-EEEEEEETHHHHHHHHS-SSS-......--SSHHHHHHHHHHHHHHHHHHH-EEEEEEEE------HH CS
       XRN_N   1 mGvpklfrwlserypkivkevieeeeeeekefdnLYlDmNgiihkcshkedkeekelskkpkteeeifkkifkyidrlvkivrprkllylavDGvaPra 99 
                 mG+pk+fr++ser+p ++ ++ie ++    efdnLYlDmN+i+h+c+h     ++++++k++teee+f kif+yid+l+++++p+k++y+a+DGvaPra
  CCD26129.2   1 MGIPKFFRYISERWP-MILQLIEGTQ-I-PEFDNLYLDMNSILHTCTHG----NDDDVTKRMTEEEVFAKIFTYIDHLFQTIKPKKVFYMAIDGVAPRA 92 
                 9**************.6666664444.3.3******************9....45668999************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-BB--------GGGSSTTSHHHHHHHHHHHHHHHHHHHH-GGGGG-EEEEE-TTS-S-HHHHHHH CS
       XRN_N 100 KmnqqRsRRfrsakeakeekeekeelkeelekeekeeeeeeekfdsnvitpGtefmeklsealkafikkklkedpawknlkvilsdaevpGEGEhKime 198
                 KmnqqRsRRfr+a++a+++ +++ e        + ee ++ e fdsn+itpGtefm+kl+++lk+fi++k+++d +w+++++i+s++e+pGEGEhKim+
  CCD26129.2  93 KMNQQRSRRFRTAMDAENALQKALE--------NGEEIPKGEPFDSNSITPGTEFMAKLTKNLKYFIHEKISNDAQWREVEIIFSGHEAPGEGEHKIMD 183
                 *****************99875444........4445578899******************************************************** PP

                 HHHHHHTSTTS-TT-EEEEE---THHHHHHHHHT-SSEEEEEE- CS
       XRN_N 199 firkqrskpeydpntrhviyglDaDLillsLathepniliLree 242
                 fir+ r+++++d+ntrh+iyglDaDLi+l+L+th p++ +Lree
  CCD26129.2 184 FIRTLRAQKGFDHNTRHCIYGLDADLIILGLSTHAPHFALLREE 227
                 ******************************************96 PP

>> XRN_M  Xrn1 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.6   5.2   3.5e-90   1.1e-86       2     339 ..     273     676 ..     272     689 .. 0.85
   2 ?   -0.6   0.0      0.16   4.9e+02     393     436 ..     689     733 ..     677     736 .. 0.83
   3 ?   -3.5   0.2       1.3   3.8e+03      75     108 ..     811     844 ..     799     870 .. 0.52
   4 ?   -3.3   1.2       1.1   3.2e+03     101     112 ..    1276    1287 ..    1238    1357 .. 0.47
   5 ?   -3.9   5.1       1.7     5e+03      95     153 ..    1458    1515 ..    1440    1534 .. 0.42

  Alignments for each domain:
  == domain 1  score: 291.6 bits;  conditional E-value: 3.5e-90
       XRN_M   2 fdleriiDDfvFlcFFvGNDFLPhlPsLeiregaidlllkvYkkelkklggyltdngevkldrveklvslvgkveekifrkrkeredrkekklakeeea 100
                 fd+er++DDfv + F +GNDFLP lP L+++ ga+  ll+ +k++l +++gy+ + g+++l+r  + ++ + + e   f+k     +  +++l++ + +
  CCD26129.2 273 FDFERVLDDFVLVMFVIGNDFLPNLPDLHLNKGAFVVLLQTFKEALLHSDGYINEHGKINLERLRVWLQYLSQFELMNFEKNDIDVEWFNQQLENISLE 371
                 8**************************************************************************999999888777777776665443 PP

       XRN_M 101 skedaan.eeaavaeeklseskvak......................................................................saea 128
                  ++++a   ++  ++++++     +                                                                          
  CCD26129.2 372 GERKRARiGKKLLIKQQKKIV---GmvkpwiikemsekipigtpdeqiptlpltnenivenldflkkfafdlglivvhskskdtyslridldgfdA--S 465
                 333333302333222222222...234578999*********************************************************986432..2 PP

       XRN_M 129 eaeaeaeaeaeakaekekreka.ekeleeseeeeeeeDkvrLgeeGykeRYYkekfevsseeieqrrevvqkYveGLcWvlrYYyqGvaSWkWfyPyhy 226
                 e+e e++++  ++  k+ ++++    +e+  e + e+D      e +k+ YYk+k+  + +  e++ ++ ++YveGL Wvl YYy+G++SW W+y yhy
  CCD26129.2 466 ESE-EEHVKRLSSLRKTIKSYQqAVLVEDADELQREQDLYNTRFESWKKDYYKDKLGFKADIEENITKLTKNYVEGLQWVLYYYYRGCPSWGWYYRYHY 563
                 222.223333333333333333033444455555667777777899***************************************************** PP

       XRN_M 227 aPFaSDlknladlkikFekgspfkpleqLmavlPaaskkalPkayqkLmtdpdSpiidlypedfeidlnGkrvaWqgvaklPfidekrLlealakleee 325
                 aP +SDl++  d  i+F k +pfkp+eqLm+vlP++sk+ +P   + Lm dp+Spi+d+yp+++++d nGk + W +v++lPf+de+rL++a+++  ++
  CCD26129.2 564 APRISDLEKGLDQVIEFAKDNPFKPFEQLMSVLPERSKNLIPPVLRPLMYDPKSPILDFYPTEVKLDKNGKTADWEAVVLLPFVDETRLIDAMKPYLSK 662
                 *******8766777************************************************************************************* PP

       XRN_M 326 LteeEkkRNtrksd 339
                 L++eEk+RN+ ++ 
  CCD26129.2 663 LSPEEKARNSFGKP 676
                 *********97765 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.16
       XRN_M 393 lssplk.elediednkvlcvkyelPkkddyvhiaellpgvvlpek 436
                  +spl+  ++d+e+++++  +y +P+ +   +i  llp++++  +
  CCD26129.2 689 YKSPLSgLFSDLEHDHCVEKEYSQPSMEGLNFIYGLLPKAKTGTE 733
                 5688886789*****************999999999999987665 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.3
       XRN_M  75 veekifrkrkeredrkekklakeeeaskedaane 108
                 +ee+++++++++ + k+++ ++ ++++++++++ 
  CCD26129.2 811 NEETVYERKEHIDADKKRHHTRIKRSADNADKKL 844
                 4566666666555444444444333333333322 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.1
       XRN_M  101 skedaaneeaav 112 
                  +k+d+  +++a 
  CCD26129.2 1276 EKVDDIRKKQAH 1287
                  111111111111 PP

  == domain 5  score: -3.9 bits;  conditional E-value: 1.7
       XRN_M   95 akeeeaskedaaneeaavaeeklseskvaksaeaeaeaeaeaeaeakaekekrekaeke 153 
                  + ++++s+++++++++ va +k s++  + ++++++ ++++a+++++   +k+++ +++
  CCD26129.2 1458 KGNKNTSDKQMKSKAKEVA-SKRSKKPSSSKSTIVNGKDNSASTKNSVSGDKKKNETNK 1515
                  3333333333333333333.333333333344444444444443333333332222222 PP

>> XRN1_D1  Exoribonuclease Xrn1 D1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.9   0.1   5.8e-71   1.7e-67       1     192 []     723     917 ..     723     917 .. 0.95
   2 ?   -1.3   0.4      0.51   1.5e+03      80     133 ..    1232    1286 ..    1229    1292 .. 0.74
   3 ?   -2.8   0.5       1.5   4.4e+03      58      69 ..    1468    1479 ..    1426    1519 .. 0.58

  Alignments for each domain:
  == domain 1  score: 226.9 bits;  conditional E-value: 5.8e-71
                 SS-TT---GGGS-TTS--STTS-EEEEEE-----SSSS--SS-EEEEEE--..------HHHHHHHHBTSEEEESGGG-EEEEEEEEE-SS-EEE.EE- CS
     XRN1_D1   1 GLlegaklgaealaGFPsLktlpftaeLefhgvnvFqqeSrneSmvvtied..keenlkleelakeklgkrvfvgyPfLrEakvvavsdelfkye.kel 96 
                 GLl++ak+g+e+laGFP+L tlpf+++Le++++ vFqq+Sr++Smv++++d  +e+nl+leel+k+++g+++++++P+LrE+k++ +++e++ ye ke+
  CCD26129.2 723 GLLPKAKTGTELLAGFPTLLTLPFKYQLEYNESLVFQQPSRQQSMVLHMDDiyEENNLTLEELSKRYIGRIIYTRWPYLRESKLIGLMNEETVYErKEH 821
                 9**************************************************99999***************************************6555 PP

                 .....SSSEEEEEE--THHHHHHHHHHHHHHHHHHHHHH-EEES--S-EEEEEEEEEEEE-TTS-EEEEE-SS-EE...EEGGG-BS--SS--GGGS-B CS
     XRN1_D1  97 ...leekkkkvvsrphsekekkefkkkaerierkyskrlgviigevevlvhveplkGLkrteeGalvKeyeeeeeleteyalqlvveevaneDeRfiek 192
                     ++++++ ++r++++ +kk f++ ++++ r+ysk+++vi+++++++v+v p+ GL+rte+Ga+vK+y++++++   y+lql+ve+++n+DeR+iek
  CCD26129.2 822 idaDKKRHHTRIKRSADNADKKLFNSLKKSMLRNYSKQKAVILDDIRAIVKVLPVVGLTRTENGAFVKNYASQPDY---YPLQLMVESISNKDERYIEK 917
                 5544455557789999************************************************************...*******************8 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.51
                  EEEEEEE-SS-EEE.EE-..SSSEEEEEE--THHHHHHHHHHHHHHHHHHHHHH- CS
     XRN1_D1   80 akvvavsdelfkye.kelleekkkkvvsrphsekekkefkkkaerierkyskrlg 133 
                  + ++++++++  y+ k++++ +++k+++++++++++ + +k++++  +   k+++
  CCD26129.2 1232 SFLLNLTNKQLVYHsKASKKVAENKTTRKHVKPTNIPNVQKNNKEKVDDIRKKQA 1286
                  6678899999999966666777778888888999988888887776666666655 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.5
                  HHHHHHHHBTSE CS
     XRN1_D1   58 leelakeklgkr 69  
                  +++ ake+  kr
  CCD26129.2 1468 MKSKAKEVASKR 1479
                  333333333332 PP

>> XRN1_D2_D3  Exoribonuclease Xrn1 D2/D3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.0   1.4e-34   4.3e-31       1      87 []     921    1008 ..     921    1008 .. 0.99

  Alignments for each domain:
  == domain 1  score: 107.0 bits;  conditional E-value: 1.4e-34
                  -HHHHS-TT-EEEE-SCTCTTEEEEEEEE.SSSEEEEEEEBS-SS---SHHHHHHHHHHHHS-EE------EEHHHHHHHHHHHCHXX CS
  XRN1_D2_D3    1 pieeEFPegskvffLGeyaYGrpaevtgh.sekklsvvlaklksekepefgkkrikeaeksnrYlpsfavakklglsplvLskitSsF 87  
                  pi+eEFPegs+++fLG+yaYG ++ ++g+ +ek+l+++++k + ++ep++gk+r++++++ ++Y+psf +akklg++pl+Ls++tS+F
  CCD26129.2  921 PIKEEFPEGSHAIFLGDYAYGGEVIIDGYnNEKRLKITVKKRSVKAEPTIGKERAQQDRNLVQYIPSFLIAKKLGMHPLLLSRLTSKF 1008
                  9****************************88999*****************************************************9 PP

>> SH3_12  Xrn1 SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.1   7.3e-23   2.2e-19       1      68 []    1166    1236 ..    1166    1236 .. 0.93

  Alignments for each domain:
  == domain 1  score: 69.3 bits;  conditional E-value: 7.3e-23
      SH3_12    1 qqfrLgdrVvyvrdngksVPlGlrGtVVg....rsdtlleVlfDeeflsgtdlggrcskmrgifvpptdlln 68  
                  q+f+LgdrV+yv+d+gk VPl ++GtVVg    + + +++VlfD+e++ g+++ggr++++rg+ +  + lln
  CCD26129.2 1166 QKFELGDRVMYVQDSGK-VPLFSKGTVVGyttlGLNLSIQVLFDHEIVAGNTFGGRLRTKRGLGLDASFLLN 1236
                  78**************7.***********999966799************************9999888887 PP

>> Xrn1_D3  Exoribonuclease 1 Domain-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.4   4.3e+03       2      33 ..     423     454 ..     422     456 .. 0.76
   2 !   69.1   0.9   8.5e-23   2.5e-19       4      70 ..    1093    1159 ..    1090    1160 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.4
     Xrn1_D3   2 dellkeiaewLKkvkadlvkVslESdSltkfS 33 
                 +e + e  ++LKk+  dl  + + S+S  + S
  CCD26129.2 423 NENIVENLDFLKKFAFDLGLIVVHSKSKDTYS 454
                 566666679*****999988888888876666 PP

  == domain 2  score: 69.1 bits;  conditional E-value: 8.5e-23
     Xrn1_D3    4 llkeiaewLKkvkadlvkVslESdSltkfSiaaiEdyvenYivqevklesKdlagVPrdAvldpstS 70  
                  +l +i+ w K ++ ++v Vs+ESdSltk Si a+E+ +++Y++ ++++e+K+la+VPr+A+l p+ S
  CCD26129.2 1093 MLDQIKAWVKFATEKFVVVSIESDSLTKSSIIAVEEVIQHYSMLPLHPEKKQLANVPRQAILSPRSS 1159
                  689*************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1548 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1455  (0.0811534); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.05u 0.27s 00:00:01.32 Elapsed: 00:00:00.47
# Mc/sec: 9870.84
//
Query:       CCD26130.2  [L=539]
Description: hypothetical protein NDAI_0G03530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      4e-26   91.7 145.3    2.1e-08   34.9  42.1    5.5  5  Nucleoporin_FG  Nucleoporin FG repeat region
  ------ inclusion threshold ------
      0.065   13.3   3.4       0.61   10.1   1.3    2.7  3  DUF1664         Protein of unknown function (DUF1664)


Domain annotation for each model (and alignments):
>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0  49.5   2.9e-09   2.6e-05       1      91 []       3     107 ..       1     126 [. 0.85
   2 !   34.9  42.1   2.3e-12   2.1e-08       6      91 .]     116     202 ..     110     202 .. 0.89
   3 !   27.4  33.6   5.1e-10   4.6e-06       6      91 .]     192     278 ..     190     278 .. 0.85
   4 !   21.0  21.8   5.1e-08   0.00045       2      68 ..     241     314 ..     240     321 .. 0.46
   5 ?   -3.1   0.0       1.7   1.5e+04      57      62 ..     471     476 ..     465     488 .. 0.51

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 2.9e-09
  Nucleoporin_FG   1 glFGaaatstsgglFGststt...atstgglFG.asstatatasggglfgat......sqtaasgglFGstnattqtta......tgglFGstaa 79 
                     g+FG  +++++gglFG++++t   a+ ++++FG +++ ++++a+ggglfg++      +++a++gglFG+++ + + ++      +g+lFG+t +
      CCD26130.2   3 GGFG--KSNSTGGLFGQSNATnaaASGATSMFGgSQNMQNNNATGGGLFGGAaptgntNTAATGGGLFGNAAPSGNINTaassgaGGSLFGNTGN 95 
                     5688..89999999999999988888888999976666666777779999999999888888899999999888777667788889999999999 PP

  Nucleoporin_FG  80 taqqttsgglFG 91 
                     + +++t+gglFG
      CCD26130.2  96 APTTNTGGGLFG 107
                     999999999999 PP

  == domain 2  score: 34.9 bits;  conditional E-value: 2.3e-12
  Nucleoporin_FG   6 aatstsgglFGststt......atstgglFGasstatatasggglfgat..sqtaasgglFGstnattqttatgglFGstaataqqttsgglFG 91 
                     ++++t+gglFG+++++      +t+tgglFG    +++++ gg lfg++  ++t+++gglFG++n++++tt +gglFG++++++ +tt+gg FG
      CCD26130.2 116 NTAATGGGLFGTANANantgggNTTTGGLFG----NNTNKPGG-LFGGNaaQNTTTGGGLFGANNQQNTTT-GGGLFGANNQQN-TTTGGGHFG 202
                     688999********99999**999*******....66777777.***9999999999********999987.******988887.689999**9 PP

  == domain 3  score: 27.4 bits;  conditional E-value: 5.1e-10
  Nucleoporin_FG   6 aatstsgglFGststt.atstgglFGasstatatasggglfgatsqtaasgglFGstnattqtta.....tgglFGstaataqqttsgglFG 91 
                     ++t+t+gg FG+++++ +t tgglFG++++ t+  ++gglfg+  +++++++lFG++n+++++ta     +g lFGs+      t++gglFG
      CCD26130.2 192 QNTTTGGGHFGNKPAStTTGTGGLFGSTNSGTTG-TTGGLFGS--KPNTTNTLFGGSNTNAPSTAtttlgSGRLFGSKPLGG--TAGGGLFG 278
                     7899999********9899999****54444444.4446***9..8999*******999988877889999999**998888..9******9 PP

  == domain 4  score: 21.0 bits;  conditional E-value: 5.1e-08
  Nucleoporin_FG   2 lFG.........aaatstsgglFGststtatstgglFGasstatatasggglfgatsqtaasgglFGstnattqtt 68 
                     lFG         a++t  sg lFGs++   t++gglFG  s++ta+  g++lfg+ ++ +++gglFGs++  +++ 
      CCD26130.2 241 LFGgsntnapstATTTLGSGRLFGSKPLGGTAGGGLFG--SNNTANIGGSSLFGQGNTMNTTGGLFGSSQYGQPQP 314
                     55544433222222222233555555555555555555..444444444455555555555555555555554443 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 1.7
  Nucleoporin_FG  57 lFGstn 62 
                     +FG+++
      CCD26130.2 471 IFGASQ 476
                     333333 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   1.3   6.8e-05      0.61      57     107 ..     332     382 ..     323     403 .. 0.86
   2 ?    1.7   0.0     0.027   2.5e+02      65      96 ..     440     471 ..     406     476 .. 0.80
   3 ?   -2.5   0.0      0.55   4.9e+03      82      99 ..     517     534 ..     498     537 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 6.8e-05
     DUF1664  57 laatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvk 107
                 +a+   +L ++i+++d+ +++q +is+++k++ +e ++ +++i +d++ + 
  CCD26130.2 332 IAELPPQLRQEIEQLDQYIQKQVQISEHLKADTEEHNNLIESIPKDISYLL 382
                 55566789***********************************99998764 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.027
     DUF1664  65 ssridrvdkkldeqkeiskeikeevtevredl 96 
                 +++i++ ++kld+ +++ ++i++ ++ +++d+
  CCD26130.2 440 QRKIHSFQNKLDDYSRVLSDIESAISGINGDI 471
                 56788888888888888888888888887765 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 0.55
     DUF1664  82 skeikeevtevredlsei 99 
                   +++e ++e+r++++ei
  CCD26130.2 517 FMDTAERIAELRQKVREI 534
                 455666777777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1144  (0.0638072); expected 358.6 (0.02)
Passed bias filter:                      608  (0.0339115); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.32s 00:00:01.02 Elapsed: 00:00:00.47
# Mc/sec: 3481.57
//
Query:       CCD26131.2  [L=126]
Description: hypothetical protein NDAI_0G03540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-30  104.8   0.8    4.9e-30  104.3   0.8    1.2  1  ATP-synt_G  Mitochondrial ATP synthase g subunit


Domain annotation for each model (and alignments):
>> ATP-synt_G  Mitochondrial ATP synthase g subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.8   2.8e-34   4.9e-30       2     100 .]      26     124 ..      25     124 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.3 bits;  conditional E-value: 2.8e-34
  ATP-synt_G   2 kveslvpkavyyskvglelskqvakkeklapPtvaefqslykqllktalaspskpqellerlknlkkeeallagvvaaevlgfFsvGEiIGRrklvGYk 100
                 k+++l++k +yy+kvg+elsk+v+k+e+ +pP++ ef+++y +++++ +++ +kpq++++ +k   k++++++g++++++lgf+svGE+IGRrk+vGY+
  CCD26131.2  26 KTNALMQKSMYYGKVGAELSKTVYKQEGFQPPKIGEFKKVYCNIFEMGKHYMNKPQAFIGLVKGAGKNDLIKFGAYGVQLLGFYSVGEVIGRRKIVGYR 124
                 6899**********************************************************************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       320  (0.0178482); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        10  (0.000557756); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 977.21
//
Query:       CCD26132.2  [L=927]
Description: hypothetical protein NDAI_0G03550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     6e-100  332.9   0.0   9.1e-100  332.4   0.0    1.3  1  MCM              MCM P-loop domain
    5.3e-36  123.2   0.3    1.1e-35  122.3   0.3    1.5  1  MCM_OB           MCM OB domain
    2.7e-29  101.4   1.9    6.5e-29  100.2   1.9    1.7  1  MCM_lid          MCM AAA-lid domain
    2.1e-17   63.6   5.6    8.7e-17   61.6   5.6    2.2  1  MCM_N            MCM N-terminal domain
    1.3e-05   25.2   0.0    7.3e-05   22.8   0.0    2.3  2  AAA_5            AAA domain (dynein-related subfamily)
    1.7e-05   24.3   0.0    0.00063   19.2   0.0    2.4  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0011   18.8   0.0       0.01   15.7   0.0    2.2  2  AAA_3            ATPase family associated with various cellul
     0.0084   16.5   0.9        1.2    9.5   0.1    3.4  2  AAA_16           AAA ATPase domain
  ------ inclusion threshold ------
      0.059   13.2   0.2       0.18   11.7   0.2    1.7  1  AAA_lid_2        AAA lid domain
       0.12   12.9   0.4       0.29   11.6   0.4    1.6  1  NDUFB10          NADH-ubiquinone oxidoreductase subunit 10
       0.15   12.3   2.8       0.56   10.5   0.1    2.9  2  Mnd1             Mnd1 HTH domain
       0.18   11.5   1.5        3.5    7.3   0.0    3.3  4  Sigma54_activat  Sigma-54 interaction domain


Domain annotation for each model (and alignments):
>> MCM  MCM P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.4   0.0  6.1e-103  9.1e-100       2     223 ..     500     721 ..     499     722 .. 0.99

  Alignments for each domain:
  == domain 1  score: 332.4 bits;  conditional E-value: 6.1e-103
                 HHHHHHHHTSSTHHHHHHHHSSTTSSS-HHHHHHHHHHHH---EBBBSSSSBBCSS-EEEEEESSTSTHHHHHHHHHHHSSSEEEEESSSSSSSHSSSE CS
         MCM   2 veeikelakekdiieklvksiapsiyghedvkkaillqlfggvkkkledktklrgdinvllvgdpgtaKsqlLkyveklapravytsgkgssaagLtaa 100
                 +++i+e+a+++d+++ l++siapsi++ +dvkk+illqlfgg +k  +++ ++rgdin+ll+gdp+t+Ksq+L+yv+k+apr+vytsgkgssa+gLta+
  CCD26132.2 500 IAKIREVAQREDLYDLLSRSIAPSIFELDDVKKGILLQLFGGANKVFKKGGRYRGDINILLCGDPSTSKSQILQYVHKIAPRGVYTSGKGSSAVGLTAY 598
                 689************************************************************************************************ PP

                 EEEESSSSSEEEEETHHHHTTTSEEEEESGGGSTCHHHHHHHHHHHHSEEEEESSSCEEEEE--EEEEEEE--SSSSCCTTS-HHHHSSSSHHHHHHSS CS
         MCM 101 vvrdeetgefvleaGalvladkGvcciDefdkmkeedrsalhEamEqqtisiaKaGivatLnartsvlaAanpkagrydkkksvaeninlsaalLsrFD 199
                 ++rd +t+++vle+Galvl+d+G+cciDefdkm++++rs+lhE+mEqqtisiaKaGi++tLnar+s+la+anp+++ry+++ +v++ni+l+++lLsrFD
  CCD26132.2 599 ITRDVDTKQLVLESGALVLSDGGICCIDEFDKMSDSTRSVLHEVMEQQTISIAKAGIITTLNARSSILASANPIGSRYNPNLPVTDNIDLPPPLLSRFD 697
                 *************************************************************************************************** PP

                 EEEEE-SSTTHHHHHHHHHHHHHH CS
         MCM 200 lifvllDkvdeekDeelaehivsl 223
                 l++++lDkvde +D++la+h++sl
  CCD26132.2 698 LVYLVLDKVDEGTDRDLARHLTSL 721
                 ********************9876 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.3   7.1e-39   1.1e-35       2     125 ..     308     436 ..     307     437 .. 0.95

  Alignments for each domain:
  == domain 1  score: 122.3 bits;  conditional E-value: 7.1e-39
                 XGG--GGGTTSEEEEEEEEEEE---EEEEEEEEEEETTT-.-EEE.....S----SB-..TTT-HHH-EEE-GGGSEEEEEEEEEEE------------ CS
      MCM_OB   2 lRdlrsehigklvkveGivtrasevkpklkkavfeckkcgktvev.....eleePrkCeekeCeskdpfkletekskfvdfqklklQEspeevpaGelP 95 
                 +R+l+ ++i+kl++++G+v ra+ v p++k a+f+c+ c +t+ v      ++eP +C + +C++ ++++l +++++f d+q +klQE+p+ vp G++P
  CCD26132.2 308 MRELNPNDIDKLITLKGLVLRATPVIPDMKVAFFKCNVCDHTMVVeidrgVIQEPARCGRVDCGEPNSMSLIHNRCSFADKQVIKLQETPDLVPDGQTP 406
                 7****************************************9888556655666********************************************* PP

                 -EEEEEEEGGGTT---TT-EEEEEEEEEEE CS
      MCM_OB  96 rslevileddlvdkvkPGdrvevtGiyral 125
                 +s++++++d+lvd++++Gdr+evtG +r++
  CCD26132.2 407 HSVSLCVYDELVDSCRAGDRIEVTGAFRSI 436
                 **************************9986 PP

>> MCM_lid  MCM AAA-lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   1.9   4.4e-32   6.5e-29       1      86 [.     739     826 ..     739     827 .. 0.94

  Alignments for each domain:
  == domain 1  score: 100.2 bits;  conditional E-value: 4.4e-32
                 HHHHHHHHHHHHTT--BETCHHHHHHHHHHHHHHHHHTSS..TSSSST--HHHHHHHHHHHHHHHHHHTSSSE-HHHHHHHHHHHHHH CS
     MCM_lid   1 ellrkYiayarekikPklseeakeklseaYvelRkeeeds..krksipitvRqLesliRLseAlAklrlsevvteedveeairllkes 86 
                 e+l+ Yi+ya+e+i+P+l eeak +l++aYv +Rk+  ds  ++k+i++t+RqLes+iRL+eA+Ak+rls++v+ edv+ea+rl++++
  CCD26132.2 739 EFLTLYINYAKENIHPVLVEEAKSELVRAYVGMRKMGDDSrsDEKRITATTRQLESMIRLAEAHAKMRLSTEVQLEDVQEAVRLIRSA 826
                 68999*******************************955555899***************************************9876 PP

>> MCM_N  MCM N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   5.6   5.8e-20   8.7e-17       2     104 .]     186     301 ..     185     301 .. 0.93

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 5.8e-20
       MCM_N   2 ekFedFLeefk............ddsededgekkYrdqlqemaerekttLevdlddLaafde..eLaeailenpkeylplleealkevvkklepsykdd 86 
                 ++F++FL +fk              ++++d+e +Y++ql+em+e ++ +L++d ++L af++  eL+ ++l++p+e++ ++++ +k+++ +l ++++ d
  CCD26132.2 186 NSFRNFLMTFKykyrkildereeFINSTTDEELYYVKQLNEMREVGNCNLNLDARNLLAFKQseELYYQLLNYPQEVISIMDQTIKDCMVSLVEDNHLD 284
                 68*******************99666678999****************************7777***************************99987777 PP

       MCM_N  87 akefpaeltrrfqvrfkn 104
                     ++++t+ ++vr++n
  CCD26132.2 285 -FDLDEIETKFYKVRPYN 301
                 .78899**********98 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   4.9e-08   7.3e-05       2     124 ..     558     673 ..     557     696 .. 0.71
   2 ?   -1.9   0.0         2     3e+03      10      49 ..     846     891 ..     846     915 .. 0.62

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 4.9e-08
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--.........--------G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-S CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreikngttslvdsplvraaregeilvlDEveraesevlnsLlslleerrllleeg 99 
                 +lL G+p t Ks++ +++ +   +  ++   +++    +     r+++ ++ +l+ ++lv     g i+++DE++++++++ ++L+ ++e++++++++ 
  CCD26132.2 558 ILLCGDPSTSKSQILQYVHKIApRGVYTSGKGSSAVGLTA-YITRDVDTKQLVLESGALV--LSDGGICCIDEFDKMSDSTRSVLHEVMEQQTISIAKA 653
                 7899999999999999998888533333333333333222.2234455688889999999..99*******************************9999 PP

                 SSEEE---......-EEEEEESS-- CS
       AAA_5 100 gelvkaknddllerfrviatanpld 124
                 g  +  ++       +++a+anp  
  CCD26132.2 654 GIITTLNAR-----SSILASANPIG 673
                 998888886.....67777777766 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
                 SSHHHHHHHGGGGBS--EEEEE-...-TT--HHHHH--B--..... CS
       AAA_5  10 tgKselaerlaaalnreveyvql...trdtteedlkgrreik...n 49 
                 tgKs + ++l + l rev+ v++   +++++ ++l+ +++     +
  CCD26132.2 846 TGKSVVQRKLQEDLAREVLKVLGeysSDSMSFNELVKQINEHsqdK 891
                 7899999999999988888888733346777888888887434322 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.058        86      21      48 ..     554     581 ..     552     593 .. 0.90
   2 !   19.2   0.0   4.2e-07   0.00063      98     160 ..     611     673 ..     604     700 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.058
  Mg_chelatase  21 GgHnlllvGppGsGKtmlakrlpsllpp 48 
                   G  n+ll+G p + K+ + + ++++ p+
    CCD26132.2 554 GDINILLCGDPSTSKSQILQYVHKIAPR 581
                   7789*******************99986 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 4.2e-07
  Mg_chelatase  98 kpGeislahnGvLfLDElpefkrkvlevLRePledgevtisrakakvefparfqlvaamNpcp 160
                   + G++ l+  G+  +DE+ +++ ++  vL e +e+++++i++a   ++  ar  ++a++Np  
    CCD26132.2 611 ESGALVLSDGGICCIDEFDKMSDSTRSVLHEVMEQQTISIAKAGIITTLNARSSILASANPIG 673
                   679999******************************************************964 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.62   9.2e+02      20      39 ..     383     402 ..     375     411 .. 0.78
   2 !   15.7   0.0   6.8e-06      0.01      49     122 ..     603     681 ..     588     686 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.62
       AAA_3  20 akaldlefkriqftpdllPs 39 
                 ++  d ++ ++q tpdl+P 
  CCD26132.2 383 CSFADKQVIKLQETPDLVPD 402
                 5667888999********96 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 6.8e-06
       AAA_3  49 ekekefefkkGpvfan...llladeinrappktqsalleameerqvtvege..thklpepflvlatqnPieqeGtyplp 122
                  ++k++ +++G+++ +   +   de ++ +  t+s l e+me+++++++++   ++l+    +la  nPi ++   +lp
  CCD26132.2 603 VDTKQLVLESGALVLSdggICCIDEFDKMSDSTRSVLHEVMEQQTISIAKAgiITTLNARSSILASANPIGSRYNPNLP 681
                 45677788888766432448899**********************99986622679**************877655555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00079       1.2      26      99 ..     557     622 ..     544     730 .. 0.78
   2 ?    3.5   0.0     0.054        81      35     106 ..     846     905 ..     845     924 .. 0.70

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00079
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawre 99 
                 ++ll G++ + Ks +++ +++ +  + g++++gk  +       + l+ +++r+   +ql  e+ +  l++   
  CCD26132.2 557 NILLCGDPSTSKSQILQYVHK-IAPR-GVYTSGKGSSA------VGLTAYITRDVDTKQLVLESGALVLSDGGI 622
                 799*****************6.6666.79999999999......77**************99977766555544 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.054
      AAA_16  35 vGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleeala 106
                 +GKs + r+l++ l ++ ++ + g++ +              +++el++q++++++++  + +   ++++l+
  CCD26132.2 846 TGKSVVQRKLQEDLARE-VLKVLGEYSSD-----------SMSFNELVKQINEHSQDKVDSSDISDILSRLQ 905
                 7***************9.55566666666...........22245778888777666655555555554444 PP

>> AAA_lid_2  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00012      0.18      22      50 ..     795     823 ..     789     826 .. 0.94

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00012
   AAA_lid_2  22 llraArAlAalegrdyVtpeDvkeaaplV 50 
                 ++r A A+A ++  ++V  eDv+ea++l+
  CCD26132.2 795 MIRLAEAHAKMRLSTEVQLEDVQEAVRLI 823
                 89***********************9986 PP

>> NDUFB10  NADH-ubiquinone oxidoreductase subunit 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4    0.0002      0.29       8      77 ..     206     279 ..     201     299 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.0002
                 XX.XXXXXXXXXXXXXXXXXXXXXXXXS-SS....-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS CS
     NDUFB10   8 rekivepnrkkyvyYHrkfrRvptideCatd....dlvClyeaemqykrDkkvdqeilkilrerleeCeqyeee 77 
                 re++++++  +  yY ++++ + ++ +C+ +    +l+ +  +e+ y +  +  qe+++i+++ +++C++   e
  CCD26132.2 206 REEFINSTTDEELYYVKQLNEMREVGNCNLNldarNLLAFKQSEELYYQLLNYPQEVISIMDQTIKDCMVSLVE 279
                 899*************************865433367889999999*999******************984433 PP

>> Mnd1  Mnd1 HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00038      0.56      24      47 ..     262     285 ..     242     287 .. 0.80
   2 ?    0.2   0.4      0.64   9.5e+02      14      45 ..     877     910 ..     870     912 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00038
        Mnd1  24 ekgivsqsVkdvlqsLvdDglvev 47 
                   +i+ q++kd++ sLv+D+ ++ 
  CCD26132.2 262 VISIMDQTIKDCMVSLVEDNHLDF 285
                 4579***************98875 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.64
        Mnd1  14 lKeleklapk..ekgivsqsVkdvlqsLvdDglv 45 
                  +el k +    + ++ s  + d+l  L ++++v
  CCD26132.2 877 FNELVKQINEhsQDKVDSSDISDILSRLQQEDKV 910
                 56777777665578999***********998776 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.31   4.6e+02      21      48 ..     554     581 ..     542     587 .. 0.86
   2 ?    7.3   0.0    0.0023       3.5      86     123 ..     612     649 ..     607     672 .. 0.81
   3 ?   -1.7   0.0       1.4     2e+03     132     151 ..     779     798 ..     769     808 .. 0.73
   4 ?   -2.5   0.1       2.4   3.6e+03     107     162 ..     849     904 ..     835     906 .. 0.66

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.31
                      SSS-EEEECSTTSSHHHHHHHHHHHSTT CS
  Sigma54_activat  21 tdlsvlitGesGtGKellaraiheaskr 48 
                       d+++l+ G+  t K+ + + +h+  +r
       CCD26132.2 554 GDINILLCGDPSTSKSQILQYVHKIAPR 581
                      5799*******************97765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0023
                      EHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEE CS
  Sigma54_activat  86 kGlfekadgGtlfLDeigelplelQekLlrvlqegeve 123
                      +G++  +dgG+  +De  +++ ++ + L +v+++++++
       CCD26132.2 612 SGALVLSDGGICCIDEFDKMSDSTRSVLHEVMEQQTIS 649
                      699999***************************99864 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.4
                      E--EEEEEEESS-HHHHHHT CS
  Sigma54_activat 132 kvdvriiaatnedleeavee 151
                      + d + i+at+++le++++ 
       CCD26132.2 779 RSDEKRITATTRQLESMIRL 798
                      45667799*******99975 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 2.4
                      HHHHHHHHHHHHHSEEESBTSSSEEE--E.EEEEEESS-HHHHHHTTSS-HHHHHHH CS
  Sigma54_activat 107 lelQekLlrvlqegevervGsskeikvdv.riiaatnedleeaveegkfredLyyrl 162
                        +Q kL + l ++ ++ +G+ ++ ++++  ++   ne+ +++v++  +  d++ rl
       CCD26132.2 849 SVVQRKLQEDLAREVLKVLGEYSSDSMSFnELVKQINEHSQDKVDSSDIS-DILSRL 904
                      55788888888888888888776666554257777777777777776665.566666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1001  (0.0558313); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 6076.99
//
Query:       CCD26133.2  [L=643]
Description: hypothetical protein NDAI_0G03560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.7e-22   79.4   8.1    1.7e-22   79.4   8.1    4.3  5  CAF1A         Chromatin assembly factor 1 subunit A


Domain annotation for each model (and alignments):
>> CAF1A  Chromatin assembly factor 1 subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.0     0.097   1.7e+03      27      55 ..      38      66 ..      21      71 .. 0.61
   2 ?   -3.8   1.6      0.83   1.5e+04      59      59 ..     147     147 ..     118     175 .. 0.53
   3 ?   -4.8   7.3         1   1.8e+04      48      71 ..     211     233 ..     185     238 .. 0.69
   4 ?   -4.1   3.8         1   1.8e+04      57      73 ..     235     251 ..     222     264 .. 0.45
   5 !   79.4   8.1   9.2e-27   1.7e-22       1      75 [.     380     455 ..     380     457 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.097
       CAF1A 27 rnPfskdekeldYdyDSdaEWeeeeeeeg 55
                ++P +k+ +++d   D  +E e e+ee+g
  CCD26133.2 38 EKPKEKEHLSIDIGDDTVEEIETESEEDG 66
                55555566666666665555555444444 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.83
       CAF1A  59 e 59 
                 +
  CCD26133.2 147 S 147
                 1 PP

  == domain 3  score: -4.8 bits;  conditional E-value: 1
       CAF1A  48 eeeeeeegedleseedeeeeeedd 71 
                 +e e+ + e+l+++ +ee+ ++d+
  CCD26133.2 211 QE-EKRKKEELKQKREEEKRKRDE 233
                 33.445778888776666655544 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 1
       CAF1A  57 dleseedeeeeeeddde 73 
                 +le ++++e e+++ ++
  CCD26133.2 235 KLEAKKQKELEKQQREQ 251
                 34333333333322222 PP

  == domain 5  score: 79.4 bits;  conditional E-value: 9.2e-27
       CAF1A   1 KllqFyedvRPpYyGTwtkkskvvgarnPfskdekeldYdyDSdaEWeeeeeeeg..edleseedeeeeeedddeed 75 
                 K+++Fye+vRPp++GT++k+  ++  +nPfs++ ++++Y+yDSd EW +ee+eeg  ++les e++e+e+eddd+ d
  CCD26133.2 380 KYIKFYENVRPPFIGTYSKNV-SLPITNPFSTEGTGYNYEYDSDLEWINEEDEEGgiDNLESGEEDEDEDEDDDQAD 455
                 9*****************855.5569**********************999777779****9999998888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3486  (0.194434); expected 358.6 (0.02)
Passed bias filter:                      724  (0.0403815); expected 358.6 (0.02)
Passed Vit filter:                       307  (0.0171231); expected 17.9 (0.001)
Passed Fwd filter:                        62  (0.00345808); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.46u 0.38s 00:00:01.84 Elapsed: 00:00:00.58
# Mc/sec: 3348.78
//
Query:       CCD26134.2  [L=332]
Description: hypothetical protein NDAI_0G03570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       933  (0.0520386); expected 358.6 (0.02)
Passed bias filter:                      515  (0.0287244); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2400.16
//
Query:       CCD26135.2  [L=381]
Description: hypothetical protein NDAI_0G03580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.17   12.1   6.5       0.35   11.2   2.8    2.2  2  zf-C4H2   Zinc finger-containing protein
       0.93    9.1   8.1        2.9    7.5   7.9    1.8  2  Med4      Vitamin-D-receptor interacting Mediator subunit 4


Domain annotation for each model (and alignments):
>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   2.8   3.9e-05      0.35      31     130 ..      17     118 ..      10     185 .. 0.74
   2 ?    2.5   0.1     0.018   1.6e+02      64     131 ..     235     308 ..     221     371 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.9e-05
     zf-C4H2  31 kcleeykkelelLeqEkmaHveeLrlIhaDinalEsv..ikeaeeekekslekakklyeeykklkeevnelrselglekledleeeeeellkeeifekq 127
                   + + k+ ++ L++ k++   +L +I + i++ E+   ik+ + e ++ +++a+ + + + kl +++ +l  + + ++  ++++++e+ +++++++++
  CCD26135.2  17 GDIDSLKQLIKVLDESKKESRTQLTKILSNIKDTERFtkIKQVQFELQQIESMAEYHAASLIKLEKRLSRLTLSDNNNTTGEKTNNKENKVNTNVLKNT 115
                 557888999999999999999999999999999997433789999999999999999999999999999988887777777777777777788887765 PP

     zf-C4H2 128 klk 130
                  ++
  CCD26135.2 116 PKN 118
                 543 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.018
     zf-C4H2  64 lEsvikeaeeekekslekakklyeeykklkeevnelrselglekledleeeeeellkeeifekqklk......a 131
                 lE+v+k+     +k ++  k l+++y    +e+ +++ +++l ++ + + e+ + l++++++ +  k      +
  CCD26135.2 235 LENVTKKKFPGVTKDKMWKKILIDKYCSNTNEIRHVLDNIILLEIYTEDPENAKPLDNKFINMKIYKclsndlR 308
                 45555555555555555555555555555666666665555555555555555555555554444332222220 PP

>> Med4  Vitamin-D-receptor interacting Mediator subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   7.9   0.00032       2.9      27     113 ..      15     102 ..      11     116 .. 0.79
   2 ?   -3.7   0.0      0.88   7.9e+03      13      34 ..     162     183 ..     160     185 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00032
        Med4  27 nearilqLraeveslDekikeivksLkeyekeLkavp.dqenskldtasiklaekrevdseeLLdYArrISkytsvppaepkasvtke 113
                  + +i++L++ ++ lDe  ke  ++L ++ + +k +  + + ++ + + ++ +   e +   L+++ +r+S+ t+ +  ++  ++t +
  CCD26135.2  15 KNGDIDSLKQLIKVLDESKKESRTQLTKILSNIKDTErFTKIKQVQFELQQIESMAEYHAASLIKLEKRLSRLTLSDNNNTTGEKTNN 102
                 56789*****************************9997666666644445555556778999*************9666666666554 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 0.88
        Med4  13 elskslkeleehqknearilqL 34 
                 +ls++l+el+++ k  +++++L
  CCD26135.2 162 QLSEKLEELSTFPKWCDNLSSL 183
                 7999999999998877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1481  (0.0826036); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2844.15
//
Query:       CCD26136.2  [L=240]
Description: hypothetical protein NDAI_0G03590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-14   53.0   0.1    7.5e-14   52.0   0.0    1.6  2  rve             Integrase core domain
     0.0075   16.4   2.3     0.0075   16.3   0.7    1.9  2  Integrase_H2C2  Integrase zinc binding domain
  ------ inclusion threshold ------
      0.064   13.0   0.0       0.11   12.2   0.0    1.5  1  rve_3           Integrase core domain


Domain annotation for each model (and alignments):
>> rve  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   1.2e-17   7.5e-14       3     116 ..      37     148 ..      34     151 .. 0.93
   2 ?   -3.5   0.0       1.9   1.1e+04      79      95 ..     178     195 ..     171     196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 52.0 bits;  conditional E-value: 1.2e-17
         rve   3 rpgelwqvDvt.vvripdgggkayllvvvddfsrlilaealsdemdastvlalleravarfggvepervlsDngseytskafrefladlgirvsftrpg 100
                 rp + + +D++  +r  +  ++  +lvv+d  ++ +  +++++  das++++ll + +   +gv p++++sD+ + +t k + ++ ++l+i+++ft  +
  CCD26136.2  37 RPWSSIGIDFVsGMR--EVHKFNSVLVVIDRLTKIARFIPTKKTLDASDCADLLINHIICHHGV-PDEIVSDRDTLFTGKIWDRLRQRLRIHLKFTTSY 132
                 667778899997667..555589****************************************9.********************************** PP

         rve 101 rpqdnGkvErfhrtlk 116
                 +p +nG  Er++ t++
  CCD26136.2 133 NPASNGQTERTNDTMR 148
                 **************98 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.9
         rve  79 tsk.afrefladlgirvs 95 
                  s+ +++ f a++g++++
  CCD26136.2 178 QSSiKTTLFFANYGFHPR 195
                 444578889999999876 PP

>> Integrase_H2C2  Integrase zinc binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.7   1.3e-06    0.0075      38      57 ..       1      20 [.       1      21 [. 0.91
   2 ?   -3.1   0.0       1.5   8.9e+03      37      47 ..     146     156 ..     145     157 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.3e-06
  Integrase_H2C2 38 mrkdvkkyvksCetCqrrkp 57
                    m + +++y k+C++Cqr+k+
      CCD26136.2  1 MVSIIEQYTKTCPQCQRTKH 20
                    6788**************97 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.5
  Integrase_H2C2  37 gmrkdvkkyvk 47 
                     +mrk + +y +
      CCD26136.2 146 TMRKIIASYTN 156
                     59999998876 PP

>> rve_3  Integrase core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.9e-05      0.11       2      30 ..     123     151 ..     122     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.9e-05
       rve_3   2 gielsyiapgkPqqNglvEsfngtlrdel 30 
                 +i l+++  + P  Ng  E+ n t+r+ +
  CCD26136.2 123 RIHLKFTTSYNPASNGQTERTNDTMRKII 151
                 7899*********************9855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1856.50
//
Query:       CCD26137.2  [L=1204]
Description: hypothetical protein NDAI_0G03600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.6e-113  379.7   0.0   3.1e-113  378.8   0.0    1.5  1  RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
    1.4e-45  155.3   0.1      2e-45  154.8   0.1    1.2  1  RNA_pol_Rpb2_1  RNA polymerase beta subunit
    3.7e-37  127.8   0.0    8.1e-37  126.7   0.0    1.6  1  RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
      6e-28   96.8   0.0    1.7e-27   95.4   0.0    1.9  1  RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
    5.3e-24   84.0   0.0    1.1e-23   83.0   0.0    1.6  1  RNA_pol_Rpa2_4  RNA polymerase I, Rpa2 specific domain
    3.9e-16   59.2   0.3    1.2e-14   54.5   0.0    2.7  2  RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb2_6  RNA polymerase Rpb2, domain 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  378.8   0.0  1.1e-116  3.1e-113       1     390 []     701    1066 ..     701    1066 .. 0.91

  Alignments for each domain:
  == domain 1  score: 378.8 bits;  conditional E-value: 1.1e-116
                      HHHT-SS-TTB-HHHHHHHHHHGGGB-S---TTTTT---SSEEEESS----SSB-S.TTTTTS........GGGS-SEEEEEBBBS--TTTTT CS
  RNA_pol_Rpb2_6    1 vaklapvvehvqspriiiqaamekqalgiyslnkfkrsnqktyllcinqkPlvktgdkveagqvldgpatekgelalGqnavVAvmsyeGYni 93  
                      +a+l+p+++ +qspr+++q++m+kq++g+  +   +rs++k+y+l+  q+P+vk +  ++ ++        ++++++G+navVAv+sy+GY++
      CCD26137.2  701 LANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKAN-LYDDYG--------MDNFPNGTNAVVAVISYTGYDM 784 
                      5899****************************************************.999999........********************** PP

                      TT-EEEBCHHHHTTTT-EEEEEE..EEE--SSSS---.-S--..-....-SS-GGGS-TTSB--SS-EEETT-EEE---..B-----...--- CS
  RNA_pol_Rpb2_6   94 EDaiilnerlvdrdvftsihikeyeveardtklgeeeitrdipnv....seealkkLdedGivrvgaevkegdilvgkvtkgeteltpeekll 182 
                      +Da+i+n+++ +r++   +++k  +v+ + ++   + it++         +e l+kLd+dG++++g++v+egd+++ +               
      CCD26137.2  785 DDAMIINKSADERGFGYGTMYKVEKVDLSLNRSRGDPITQHFGFGndewPKEWLDKLDDDGLPYIGTYVEEGDPICAYF-------------- 863 
                      **********************98888855555555555544222234799*************************996.............. PP

                      --------..-B---EE--TT-EEEEEEEEE.......EE-TT--EEEEEEEEEEE---TT-BEEETTS---BBEEEB-TTTSEEETTS---S CS
  RNA_pol_Rpb2_6  183 raifgekarevkdtslrvksgeegvVdkvkvfsrekgdelkagvnklvkvyvaqkRklqvGDKfasrhGqKGvvslilpqeDmPfledGivvD 275 
                           ++    k++  +++s+e++++++v+++    ++++k +  ++v ++ + +R++q+GDKf+srhGqKGv+s+ +p+ DmPf e Gi++D
      CCD26137.2  864 ----DDTL--NKTKIKTYHSSEPAYIEEVNLI---GDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPD 947 
                      ....3333..356677899999*********5...4555667899************************************************ PP

                      EEE-GGGCHHH-BTTHHHHHHHHHCCCSSSS--B--TT-.......-HHHHHHHHHTTS-TT-EE-EEETTTS-B-SS-EEB-EEEEEEBS-- CS
  RNA_pol_Rpb2_6  276 ivlNPlgvPSRmtigqllEtllgkaaalegkkvdatvFdgak....eeeikelLeeagleasGkevlydGrtGekleaeifvGviYylkLkhl 364 
                      +++NP+++PSRmtig+ +E+l+gk +al+g+ +dat++  ++     +++ ++L +ag++++G+e +y+G tGe+l+a+i++Gv+Yy++L+h+
      CCD26137.2  948 VIINPHAFPSRMTIGMFVESLAGKSGALHGVAHDATPWIFNEndtpADYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHM 1040
                      ************************************86655544544********************************************** PP

                      CCCS----SS--B-TTT--B-SCGGG CS
  RNA_pol_Rpb2_6  365 vedKihaRstGpyslltqQPlgGkaq 390 
                      v+dK+++RstGp++ lt QP++G+++
      CCD26137.2 1041 VNDKFQVRSTGPVNSLTMQPVKGRKR 1066
                      ************************86 PP

>> RNA_pol_Rpb2_1  RNA polymerase beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.8   0.1   6.7e-49     2e-45       2     201 ..      41     458 ..      40     460 .. 0.94

  Alignments for each domain:
  == domain 1  score: 154.8 bits;  conditional E-value: 6.7e-49
                     TTHHHHHHHHHH............HHTHHHHHCTTSSECCHCSSSHCSSSC....EEEEEEEEEEESCSSEC..TTSCEEES.HHHHHHCTSBXE CS
                     xxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1   2 LvsqqldSFnkf............veqdlekiikeeaaieseeeiqssgee....lelkfvsirlgkPvvde..sdasereiyPkearlrnltYs 78 
                     +v++++ SFn++            v++  ek+i +   +  ++  + +++     l+l++++++++kP++++  s+++er+++P+e r+r  +Y+
      CCD26137.2  41 AVEPHIGSFNALtegpdggllnqgVKDIGEKVIFDGRSLDNNDIDTIKEAYlgnkLSLSVEQVSIAKPMSNDgvSSGVERKVFPSETRQRLSSYK 135
                     699*******************************999988765433222223445*****************9999******************* PP

                     EEEEEEEEEEECCCCTCCEEEEEEEEEEEEEXBTTSTTSSSTTS.HHHHHHTTS.TTS..SSEEETTCEEEEXEEEE.................. CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................. RF
  RNA_pol_Rpb2_1  79 aplyvklklvvyekdnkeeikeeevyiGelPlMlrskacvlseaseeelvelkEcpldqGGyFiinGtekvivaqek.................. 155
                     ++l++klk++v+   n+ee  +e  ++G lP+Ml+s++c+l+++s+++lv++kE+++++GGyFiinG+ek+i++++                   
      CCD26137.2 136 GKLMLKLKWSVN---NGEEVYSEVRDCGGLPIMLQSNRCHLNKLSPYDLVQHKEESDEMGGYFIINGIEKLIRMLIVqrrnhpmaiirpsfanrg 227
                     ***********7...999999999****************************************************99***************** PP

                     ............................................................................................... CS
                     ............................................................................................... RF
  RNA_pol_Rpb2_1 156 ............................................................................................... 155
                                                                                                                    
      CCD26137.2 228 asysqygiqlrsvrpdqtsqtnvlhylndgqvtfrfswrkneylvpvvmilkalcdtsdreifdgiigsdlkdsfltdrlelllrgfkkryptlq 322
                     *********************************************************************************************** PP

                     ..................................................................................XHHHHHHHHHHHH CS
                     ..................................................................................xxxxxxxxxxxxx RF
  RNA_pol_Rpb2_1 156 ..................................................................................laGeLlaslfrvl 168
                                                                                                       l+G L+ ++ +++
      CCD26137.2 323 nrtqvlqylgdkfrvafqaspdksdyevgqelidrivlvhlgkgnnqdkfnmllfmirklyslvagecspdnpdatqhqevlLGGFLYGMIIKEK 417
                     *********************************************************************************************** PP

                     HHHHHHHHHHHHHHHHCTSS.......SSSHHHHSCS.HHH CS
                     xxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxx.xxx RF
  RNA_pol_Rpb2_1 169 lkklerdvkerlqkslekld.......dlmlqllvna.kpi 201
                     ++++ +++ ++++ + +++        ++m ++l+++ ++i
      CCD26137.2 418 IDEYLQNIVAQIRTDSNRGLainfkdrKYMARVLMRVnDNI 458
                     ************77777665777776668888888775555 PP

>> RNA_pol_Rpb2_2  RNA polymerase Rpb2, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.0   2.7e-40   8.1e-37       1     189 [.     211     403 ..     211     404 .. 0.97

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 2.7e-40
                     -TSCEEEEE-SSSSSE..........SSSCCEECCCEEEEECCCCSTSCEEEEECTTSSSEEEHHHHHHHTT--STTHHHHHHTS.....SSTTH CS
  RNA_pol_Rpb2_2   1 rsngiyvekekdknki..........satvtsslisqrgsvlklekdgktliwtriskkrkipivivlkAlglvsdreIlericy.....dseds 80 
                     r+n++++  +++  ++           ++v+ +++sq++++++l++++ t++++++++++ +p+v++lkAl+ +sdreI+++i++     ++ ++
      CCD26137.2 211 RRNHPMAIIRPSFANRgasysqygiqLRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCDTSDREIFDGIIGsdlkdSFLTD 305
                     7999*********999********999*********************************************************9999999**** PP

                     HHHHHHHHHHHHHCTSSSCHHHHHHHHH...CSSTTSSSCCCCCHHHHHHHCHHHHHHHTTTTSSTTTTTSSSTCHH..HHHHHHHHHHHHHHHH CS
  RNA_pol_Rpb2_2  81 qlleelleeleekeeiqtqeealdyigk...vvalrrgeearlqsareilqkrydlgeigreklnkhlglseslenkrlkaqdilymidrLlslk 172
                     +l+ +l+  ++++  +q+++++l+y+g+   v +++++++++ ++++e++         +r +l+ hlg+ + +  +  k+ ++l+mi++L+sl 
      CCD26137.2 306 RLELLLRGFKKRYPTLQNRTQVLQYLGDkfrVAFQASPDKSDYEVGQELI---------DRIVLV-HLGKGNNQ--D--KFNMLLFMIRKLYSLV 386
                     ****************************99999999***********996.........8*****.*******4..4..9*************** PP

                     TTSSSS--TTSGGGEEE CS
  RNA_pol_Rpb2_2 173 lgrrevDDiDhlgnkRv 189
                     +g++++D+ D +++++v
      CCD26137.2 387 AGECSPDNPDATQHQEV 403
                     ***************98 PP

>> RNA_pol_Rpb2_3  RNA polymerase Rpb2, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.4   0.0   5.7e-31   1.7e-27       2      68 .]     488     552 ..     487     552 .. 0.98

  Alignments for each domain:
  == domain 1  score: 95.4 bits;  conditional E-value: 5.7e-31
  RNA_pol_Rpb2_3   2 vldrlnplselshlrrvsslrgglskerkttevRdlhpshwGriCpveTPEGencGlvksLallarv 68 
                     v++++n+++++sh+r v+  rg+++++ ktt+vR+l p++wG++Cpv+TP+G++cGl++++a+ +++
      CCD26137.2 488 VAEKINFYRFISHFRMVH--RGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCKI 552
                     89****************..*********************************************98 PP

>> RNA_pol_Rpa2_4  RNA polymerase I, Rpa2 specific domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.0   3.6e-27   1.1e-23       1      58 []     594     652 ..     594     652 .. 0.98

  Alignments for each domain:
  == domain 1  score: 83.0 bits;  conditional E-value: 3.6e-27
  RNA_pol_Rpa2_4   1 iGyvspkeakavaktLRrlKveg.ekkvpltlEIglvppskggqYpGLYlftspaRmmR 58 
                     iG+vs+++ k +a+tLR +Kveg  +++pl+lEIg+vpps++gqYpGLY+f +++RmmR
      CCD26137.2 594 IGWVSHEQGKIIADTLRFWKVEGkVPGLPLDLEIGYVPPSNSGQYPGLYIFGGHSRMMR 652
                     8**********************55*********************************9 PP

>> RNA_pol_Rpb2_7  RNA polymerase Rpb2, domain 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.2   1.6e+04      47      62 ..     547     562 ..     540     564 .. 0.71
   2 !   54.5   0.0     4e-18   1.2e-14       1      83 [.    1068    1198 ..    1068    1202 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 5.2
                     EEEBTTTTCSSSEEEE CS
  RNA_pol_Rpb2_7  47 aneCkivkseekiekv 62 
                     a++Cki ++++++++v
      CCD26137.2 547 AHKCKISTQQSDVSQV 562
                     3389999999998887 PP

  == domain 2  score: 54.5 bits;  conditional E-value: 4e-18
                      BBEEEEHHHHHHHHHHTBHHHHHHHHTTTTTEEEEEEESSSSSCCCEE............................................. CS
  RNA_pol_Rpb2_7    1 GGlrfGEMErdaliayGaaalLkerltikSDavevdvcgrckllaaan............................................. 48  
                      GG+r+GEMErdali++G++ lL++rl+  SD ++  vc++c+ + +++                                             
      CCD26137.2 1068 GGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTSVCRECGSILTTQqsvprigslstvccrrcaikfdkakallasqdgdanvfiddsqiw 1160
                      9*****************************************998877899999999999888777777777777777777777777777777 PP

                      ...EBTTTTCSSSEEEEEEEHHHHHHHHHHHHTTBEEE CS
  RNA_pol_Rpb2_7   49 ...eCkivkseekiekveipeafklLlqeLqslgialk 83  
                         + +   + +++++v ip   k L  eL+++gi+l+
      CCD26137.2 1161 edgQGNKFVGGNDTTTVAIPFVLKYLDSELTAMGIRLR 1198
                      77766666666666777777777777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1204 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.78u 0.25s 00:00:01.03 Elapsed: 00:00:00.42
# Mc/sec: 8656.72
//
Query:       CCD26138.2  [L=943]
Description: hypothetical protein NDAI_0G03610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-48  164.6   1.4      2e-48  164.3   0.0    1.9  2  E1-E2_ATPase     E1-E2 ATPase
    4.7e-47  160.0   1.7    4.7e-47  160.0   1.7    2.2  2  Cation_ATPase_C  Cation transporting ATPase, C-terminus
    1.5e-20   73.1   0.0      3e-20   72.1   0.0    1.5  1  Cation_ATPase    Cation transport ATPase (P-type)
    2.1e-19   70.7   0.3    1.3e-18   68.1   0.3    2.1  1  Hydrolase        haloacid dehalogenase-like hydrolase
    4.1e-16   58.4   0.0    1.2e-15   56.9   0.0    1.8  2  Cation_ATPase_N  Cation transporter/ATPase, N-terminus
    2.8e-05   24.0   0.9     0.0014   18.4   0.6    2.4  2  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
       0.04   14.1   2.5        2.8    8.2   0.2    3.0  2  DUF3784          Domain of unknown function (DUF3784)
       0.39   10.9   1.4        1.6    8.9   1.4    2.1  1  SPC12            Microsomal signal peptidase 12 kDa subunit (


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.5       4.6     1e+04     130     157 ..     102     127 ..      86     132 .. 0.44
   2 !  164.3   0.0   9.1e-52     2e-48       1     181 []     147     349 ..     147     349 .. 0.99

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 4.6
                   HHHHHHS-STTTSSTTHHHHHHHHHHHH CS
  E1-E2_ATPase 130 allvflialllgkslaeallralallva 157
                   +  +++ +++ + +  +a+  +la++++
    CCD26138.2 102 IGSAVVSFFMGNID--DAISITLAIFIV 127
                   22222222233333..333333333332 PP

  == domain 2  score: 164.3 bits;  conditional E-value: 9.1e-52
                   SSS--EEEEE-TTS-EEEEGGG--TTSEEEEETT-B--SEEEEEEE-S.EEE-TTTS---S-EE-.....................G-TTEE-TT-E CS
  E1-E2_ATPase   1 kllpptakvirdgteeeidakelvpGDivllkagdrvpaDgrivegsa.evdesaLTGEslpvek.....................ekgdmvfsGtv 75 
                   kl p+++++ir g+e  + a++lvpGD+v ++ gdr+paD ri+e  + ++des LTGE +pv+k                     ++++ +++Gt 
    CCD26138.2 147 KLVPAECHLIRCGQESHVLASNLVPGDLVHFRIGDRIPADLRIIEAVDlSIDESNLTGECEPVHKssqainkesfndqpnsiipisDRTSIAYMGTL 243
                   57899********************************************************************************99********** PP

                   EEE-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTTHHHHHHHHHHHHHS-TTHHHHHHHHHH CS
  E1-E2_ATPase  76 vvsgeakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgkslaeallralallvaaiPcaLplavplala 172
                   v++g+ k++V+ tg++t +g + +++++ ++ ktplq  +dklgk l+++++ ++ l++++ +l g+s+ e++  +++l+vaaiP++Lp++v+++la
    CCD26138.2 244 VKEGHGKGIVVGTGKNTSFGAVFDMMSNIEKPKTPLQLSMDKLGKDLSLFSFGVIGLICFVGILQGRSWLEMFQISVSLAVAAIPEGLPIIVTVTLA 340
                   ************************************************************************************************* PP

                   HHHHHHHHT CS
  E1-E2_ATPase 173 lgarrlakk 181
                   lg+ r+ak+
    CCD26138.2 341 LGVLRMAKR 349
                   *******96 PP

>> Cation_ATPase_C  Cation transporting ATPase, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.4      0.62   1.4e+03      44     161 ..     291     322 ..     277     347 .. 0.60
   2 !  160.0   1.7   2.1e-50   4.7e-47       1     181 [.     755     927 ..     755     928 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.62
  Cation_ATPase_C  44 pliskkmlrriliqgllqalvtllvffltlllfgisekenklssnyaqtmaFitlvlsqifnalnlrsrreslfkfsglfsnkllllaillsll 137
                      +l+s ++++ i+++g+lq+ + l +                                                                     
       CCD26138.2 291 SLFSFGVIGLICFVGILQGRSWLEM--------------------------------------------------------------------- 315
                      4555555555555555555444444..................................................................... PP

  Cation_ATPase_C 138 lqvlivyvpglnavfgtaplslee 161
                                        ++s++ 
       CCD26138.2 316 -----------------FQISVSL 322
                      .................4444444 PP

  == domain 2  score: 160.0 bits;  conditional E-value: 2.1e-50
  Cation_ATPase_C   1 plplsaiqiLwinLvtDllpalaLaleppekdimkrpPrkkkepliskkmlrriliqgllqalvtllvffltlllfgisekenklssnyaqtma 94 
                      p+pl+a+qiLwin+++D+ pa +L++ep + ++mkrpPrk++++++++++l+r ++ ++ ++l t+++f   +  +g+ + +         tm+
       CCD26138.2 755 PNPLNAMQILWINILMDGPPAQSLGVEPVDHEVMKRPPRKRSDKILTSSVLKRLVGTATCIILGTVYIFVKEMAEDGVVTAR-------DTTMT 841
                      79*******************************************************************9999977777765.......89*** PP

  Cation_ATPase_C  95 FitlvlsqifnalnlrsrreslfkfsglfsnkllllaillslllqvlivyvpglnavfgtaplsleewlialllalvvllvdelvKl 181
                      F+ +v++ +fnal++r++++s+f+ +g+f nk++ la+ lsll q++ +y+p++++vf+t++lsl ++l +ll+++ v+++de++K+
       CCD26138.2 842 FTCFVFFDMFNALACRHNTKSIFE-VGFFVNKMFNLAVGLSLLGQMCAIYIPFFQSVFKTESLSLGDLLFLLLISSSVFIFDEIRKY 927
                      ************************.*************************************************************8 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   1.4e-23     3e-20       2      91 .]     426     508 ..     425     508 .. 0.95

  Alignments for each domain:
  == domain 1  score: 72.1 bits;  conditional E-value: 1.4e-23
  Cation_ATPase   2 lcNsaafsensekdevkllGnktEsALlvlaeklgldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCthv 91 
                    +cN+a+f    + +  ++lGn+t++ALl+   k+  +++++r+  kkvqeipFns+rK+m++ +++ p+++++lyvKGA e +l +C+h+
     CCD26138.2 426 MCNNASF----SAEHGNYLGNPTDIALLEQLPKF--NMKDIRHTVKKVQEIPFNSKRKFMATKVVN-PDGVYTLYVKGAFEKMLGHCSHY 508
                    79*****....7777799****************..9****************************8.8********************95 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.3   5.7e-22   1.3e-18       1     210 []     365     685 ..     365     685 .. 0.66

  Alignments for each domain:
  == domain 1  score: 68.1 bits;  conditional E-value: 5.7e-22
                 SSEEEEESBTTTBCHHHHHHHHHHHH.......................CHHHHHHHHHH...........HHCHHHHHHHHHHHHHHHHHHHHHHETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx.......................xxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa.......................alalaaaletg...........sehpigkalvaaakarsgaltgfatfig 65 
                 +++++ Dk+GTLt  ++   ++++                         + + ++ l +g                                       
  CCD26138.2 365 VNVICSDKTGTLTSNHMTASKIWCLGsmdnksnvlsldkgknsnlknylTDDVRETLIIGnmcnnasfsaeH--------------------------- 436
                 699***********************6665555554444443333333322222222222222222222220........................... PP

                 TE......................................................HHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH....... CS
                 xx......................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
   Hydrolase  66 rg......................................................ayaigkpewltaldippdlgaaigsaqsqgrtvall....... 103
                  g                                                                                                 
  CCD26138.2 437 -GnylgnptdialleqlpkfnmkdirhtvkkvqeipfnskrkfmatkvvnpdgvytL----------------------------------Yvkgafek 500
                 .12222222222222222333333333444444444444555555555555554441..................................03333333 PP

                 .............................................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEE CS
                 .............................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 104 .............................................................qaralavftiadplkvkpeaaeavasLkaagievvllt 141
                                                                              +    +++ + dp  ++  ++ a+++L + g+ v+++t
  CCD26138.2 501 mlghcshylnekgknekltatqretiieaanalaseglrtlafakqllpdsptlltedsidDLIFTGLIGMNDP--PRTTVKPAIEQLLQGGVHVIMIT 597
                 33333333333333333335555555556778888888888888*************999888999999999**..*********************** PP

                 SSEHHHHHHHHHHTT................GGGE.SEEEEHHCES..STTTSHHHHHHHHHHHTSTGGGEEEEESSHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxx................xxxx.xxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 142 gdnpetaeraanqlG................ddyf.daviasdiet..vakpspegkvaaireLqgkpeevamVGDgvnDaaalaaAg 210
                 gd+++ta  +a+q+G                ++   d   ++++++  +a + pe+k+ +++ L+ ++  vam GDgvnDa+al+ A+
  CCD26138.2 598 GDSENTAVNIARQIGipvidpklsvlsgdrlNEMTeDQLANVIDHVniFARATPEHKLNIVKALRKRGDVVAMTGDGVNDAPALKLAD 685
                 *******************99988888777655554555555555599*****************99999***************997 PP

>> Cation_ATPase_N  Cation transporter/ATPase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   5.4e-19   1.2e-15       2      69 .]      39     108 ..      38     108 .. 0.96
   2 ?   -3.7   0.0       4.4   9.8e+03      34      52 ..     570     588 ..     555     595 .. 0.85

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 5.4e-19
  Cation_ATPase_N   2 halsleevlekLetdlenGL.tqaeaaerlkkyGpNelkekkkkslwvkllkqf.tnplvilLlvaalvs 69 
                       +ls++e+l+kLet+ ++GL t aea +r  +yGpNe++ ++ +slw+k+l++f  + l++lL+ +a+vs
       CCD26138.2  39 CTLSVDETLRKLETNGTTGLpTVAEASRRKLTYGPNEIEIEEDESLWKKFLSSFvEDRLILLLIGSAVVS 108
                      689*****************777*******************************9*************98 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 4.4
  Cation_ATPase_N  34 GpNelkekkkkslwvkllk 52 
                      G N  +    k+++++ll+
       CCD26138.2 570 GMNDPPRTTVKPAIEQLLQ 588
                      8899999999999999986 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.026        59      20      55 ..     579     614 ..     568     642 .. 0.87
   2 !   18.4   0.6   6.3e-07    0.0014     195     254 ..     657     717 ..     654     718 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.026
                  HHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  20 tkeaikklkekgikvviATGRslravlpvleelgld 55 
                   k ai++l + g++v+  TG s  ++ ++++++g+ 
   CCD26138.2 579 VKPAIEQLLQGGVHVIMITGDSENTAVNIARQIGIP 614
                  6789***************************99965 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 6.3e-07
                  HHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETT.S-HHHHHHSSEEE--GGGTHHHHH CS
  Hydrolase_3 195 lakelnisleeviafGDgeNDieMLeaaglgvAmgn.aseevkkaAdyvtksnnedGVaka 254
                  ++k l+   + v+  GDg ND + L+ a++gv mg  +++ +k+a+d+v ++ + + ++ a
   CCD26138.2 657 IVKALRKRGDVVAMTGDGVNDAPALKLADIGVSMGRmGTDVAKEASDMVLTDDDFSTILTA 717
                  667788888889999*******************975788889999999888776777666 PP

>> DUF3784  Domain of unknown function (DUF3784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.2    0.0012       2.8      32      86 ..      79     133 ..      69     137 .. 0.83
   2 ?    4.5   0.2     0.018        40      11      82 ..     251     324 ..     249     344 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0012
     DUF3784  32 eekekydekklsrfmgivllligilflllgllsaiesealliialiviiiiviyl 86 
                 ee e+  +k ls f+   l+l+ i  ++ +++++  ++a++i   i+i+++v ++
  CCD26138.2  79 EEDESLWKKFLSSFVEDRLILLLIGSAVVSFFMGNIDDAISITLAIFIVVSVGFI 133
                 8999999********9999999999*******88888888887777777777654 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.018
     DUF3784  11 GilflkgkganLiaGYntmskeekekydekklsrfmgivlllig.ilflllgll.saiesealliialiviiii 82 
                 Gi++ +gk + + a + +ms+ ek k   +    + g+ l l +  ++ l++++ + +++++l ++++ v +++
  CCD26138.2 251 GIVVGTGKNTSFGAVFDMMSNIEKPKTPLQLSMDKLGKDLSLFSfGVIGLICFVgILQGRSWLEMFQISVSLAV 324
                 89999*******************99888777777777777776334444444443345555555544455444 PP

>> SPC12  Microsomal signal peptidase 12 kDa subunit (SPC12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   1.4   0.00072       1.6       9      46 ..      93     130 ..      91     133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00072
       SPC12   9 aekllqvilvlsaviafivGyitqdlkltlyillagvv 46 
                 +e+ l ++l+ sav++f++G i + +++tl i+++  v
  CCD26138.2  93 VEDRLILLLIGSAVVSFFMGNIDDAISITLAIFIVVSV 130
                 5666778999***********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.72u 0.28s 00:00:01.00 Elapsed: 00:00:00.44
# Mc/sec: 6491.97
//
Query:       CCD26139.2  [L=414]
Description: hypothetical protein NDAI_0G03620, partial [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-47  160.8   0.0    4.9e-47  159.7   0.0    1.5  1  Sua5_yciO_yrdC  Telomere recombination
    4.1e-25   88.9   0.0    6.6e-25   88.2   0.0    1.3  1  SUA5            Putative GTP-binding controlling metal-bindin


Domain annotation for each model (and alignments):
>> Sua5_yciO_yrdC  Telomere recombination
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.7   0.0   5.4e-51   4.9e-47       5     179 .]      73     258 ..      69     258 .. 0.94

  Alignments for each domain:
  == domain 1  score: 159.7 bits;  conditional E-value: 5.4e-51
                     TTSEEEEE-SSSEEEEEETTSHHHHHHHHHHHTSHCCC--EEEESSCCCCCCCC-.TC--HHHHH........HHHCT-SSSCEEEEE..E-T.. CS
  Sua5_yciO_yrdC   5 kGgivaiptetvYgLacdatneeaverlreiKgrpsdkplavlvasledlkklae.seveeealk........llerfwPGpitlllkrskek.. 88 
                     +++ va+ptetvYgL+ +a n+++v +++++K+rpsd+pl+ +++s+++l++ +  ++ +   l+        l+ ++wPGp+t+ll  ++++  
      CCD26139.2  73 TNETVAFPTETVYGLGGSALNDQSVLNIYKAKNRPSDNPLITHISSINQLNRKIFnDNSPSDPLEnipkiyhpLISKLWPGPLTILLSTENTHgs 167
                     6789**********************************************99999777766666667777777***************9888889 PP

                     S-HHHHTTTTEEEEEE-SSHHHHHHHHHCTS-EEEEES-STTS-S-SSHHHHHHHC-TTSECB-SS---SSS---EEEETTSSTSSECEXX CS
  Sua5_yciO_yrdC  89 lpkevapglktvGvrlPdtplarlLlealgeplvaTSanlsgepsitdaeeveeelgeivdlildggeiavgvdstVvdltegkpkilRrG 179
                     l++  ++ ++t++vr+P++p+ar+L+   ++p++a+San s++ps+t a++v ++l++++ lildgg++++gv+stV+d ++++p +lR+G
      CCD26139.2 168 LSERTTNFQSTFAVRIPSNPIARALIALSDTPIAAPSANTSTKPSPTLASHVFHDLKGKIPLILDGGPCNIGVESTVLDGLSNPPMLLRPG 258
                     *********************************************************************************99******98 PP

>> SUA5  Putative GTP-binding controlling metal-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   7.4e-29   6.6e-25      15     129 ..     280     411 ..     260     413 .. 0.68

  Alignments for each domain:
  == domain 1  score: 88.2 bits;  conditional E-value: 7.4e-29
                 ........-------------S-SSEEEEE--GGGHHHH..........HHHHHTTS-EEEEEEGGGTGG............TSEEEEE.........E CS
        SUA5  15 k.....keekpraPGmkyrHYaPkapvvlveaeeeeeaake.....ekleekkksgkkvgvlatseskea............assvlsls.......lg 84 
                 +     ++e +r+PGmky+HY+P+a+vvl+ +++ +e  ++     +      ++ +k+++l++ + +              +      +       lg
  CCD26139.2 280 SklnvkSNEVVRTPGMKYKHYSPNAKVVLLIPSSTNEYLARlidfiK-----MQTFNKLAILTSYHLNGLslddlsqintnsK------EhtiviksLG 367
                 13444478999*******************99998887776444440.....4444555555533333335554444444331......0333343477 PP

                 -TT-HHHHHHHHHHHHHHHH.HS--SEEEEE----STTHHHHHHHH CS
        SUA5  85 srsdleeaarnLFaaLrelD.eegvdlilvegvpeeglglAvmnRL 129
                   ++ ee+++nLFa Lre+D +++vdlilvegv e+++glA+mnRL
  CCD26139.2 368 --QTGEEIQANLFARLREVDeDDKVDLILVEGVTENEEGLAIMNRL 411
                 ..999***************7789*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      450  (0.025099); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3144.93
//
Query:       CCD26140.2  [L=256]
Description: hypothetical protein NDAI_0G03630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       417  (0.0232584); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1868.16
//
Query:       CCD26141.2  [L=73]
Description: hypothetical protein NDAI_0G03640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       397  (0.0221429); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 576.39
//
Query:       CCD26142.2  [L=379]
Description: hypothetical protein NDAI_0G03650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
      0.024   14.7   2.5          9    6.3   0.5    3.4  3  PgaD             PgaD-like protein
      0.064   13.2   0.0       0.14   12.1   0.0    1.5  1  Intron_maturas2  Type II intron maturase


Domain annotation for each model (and alignments):
>> PgaD  PgaD-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.5     0.001         9      23      74 ..     229     277 ..     179     292 .. 0.79
   2 ?    1.6   0.0     0.029   2.6e+02       2      29 ..     301     328 ..     301     333 .. 0.92
   3 ?    4.6   0.0    0.0036        32      10      36 ..     352     378 ..     342     379 .] 0.77

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.001
        PgaD  23 laWagwiyLfvpllvllawllglelfeaeillglfseasasevegslselet 74 
                 l++ +wi+    +lv    +++++lf+++ ++ l +e+s+s +++sl++le+
  CCD26142.2 229 LLHSIWIFFGYTFLVP---IISWNLFVKNRMASLPVESSSSGLSSSLKKLES 277
                 5566677766666666...666888888888888888888777777666654 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.029
        PgaD   2 IieerrllpwskrlldsilTllaWagwi 29 
                 Ii e ++l++ +++++ il ++ W++++
  CCD26142.2 301 IILECESLSHGHKTVSIILKVMEWFIFV 328
                 7778899999****************96 PP

  == domain 3  score: 4.6 bits;  conditional E-value: 0.0036
        PgaD  10 pwskrlldsilTllaWagwiyLfvpll 36 
                 + +k ++  ++ +++++g+ yL+++++
  CCD26142.2 352 NDKKNYGTFLFSIVLHVGFCYLLKRVI 378
                 456778888999************998 PP

>> Intron_maturas2  Type II intron maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.6e-05      0.14      49      84 ..     119     156 ..     108     160 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.6e-05
  Intron_maturas2  49 rykaiirgllnYYs..fadnkkrlrerikyilrkscvk 84 
                      + k+++ gllnYYs  f  n k+l +rik+  + s+ k
       CCD26142.2 119 NQKKLGPGLLNYYSqfFQLNSKQLISRIKFTFKLSISK 156
                      6678999******977789***************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      317  (0.0176809); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2969.64
//
Query:       CCD26143.2  [L=511]
Description: hypothetical protein NDAI_0G03660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.011   15.9   3.9      0.011   15.9   3.9    2.8  3  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.9   3.9     6e-07     0.011       2      17 ..     288     303 ..     287     305 .. 0.92
   2 ?    1.2   0.8     0.024   4.2e+02       2      10 ..     370     378 ..     369     380 .. 0.66
   3 ?   -1.8   0.1       0.2   3.6e+03      22      31 ..     464     473 ..     460     480 .. 0.60

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 6e-07
                 S-HHHHHCT---STSS CS
     Zn_clus   2 aCdnCrkkKvKCdakk 17 
                 +Cd Cr kK+KC+ak+
  CCD26143.2 288 SCDKCRYKKIKCNAKI 303
                 8************975 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.024
                 S-HHHHHCT CS
     Zn_clus   2 aCdnCrkkK 10 
                 +C++C+k++
  CCD26143.2 370 PCTSCSKRR 378
                 577777765 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.2
                 HHHHCTHHHC CS
     Zn_clus  22 nCkklnleCt 31 
                  C +l+  C+
  CCD26143.2 464 DCTTLQHGCV 473
                 4556666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1529  (0.0852808); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.29s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 3481.30
//
Query:       CCD26144.2  [L=214]
Description: hypothetical protein NDAI_0G03670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-24   85.2   0.2    3.5e-12   46.3   0.0    2.3  2  DCP1      Dcp1-like decapping family


Domain annotation for each model (and alignments):
>> DCP1  Dcp1-like decapping family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0     2e-16   3.5e-12       1      56 [.      10      65 ..      10      75 .. 0.92
   2 !   37.0   0.1   1.5e-13   2.7e-09      53     116 ..     118     202 ..      96     203 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 2e-16
                HHHHHHHHHHHH-TTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEETT.S CS
        DCP1  1 rkelnlrvLqrldpsiesildtashvvlYkfnessqeWektdieGtLfvvkrskep 56
                rk+ln +v+ r+dp+i+++l +++h+++Yk++ ++ eW+k +++G+L ++ r+ ++
  CCD26144.2 10 RKALNYNVIGRYDPKIKQLLFHTPHASIYKWDFNKDEWNKLEYQGVLAIYLRDVSN 65
                5799**********************************************997654 PP

  == domain 2  score: 37.0 bits;  conditional E-value: 1.5e-13
                 TT.S-EEEEEEESSSS--EEEEESS....................G.GGEEEETTEEEEEETTTEEEEEEESSHHHHHHHHHHHH CS
        DCP1  53 skepryglivlNrkslenliedltk....................e.lelelqgeyliyrteeeevfgiWfyeeedreriasllk 116
                 ++ ++ygli+lNr +++n++  + +                    e + +e++++++i+++ ++ev+giW++   dr++i++l+k
  CCD26144.2 118 KDIYNYGLILLNRINPDNFSMGILPnsvvnkrkvfdatgeaqnplEcMGVEVKDDLVIIKNLKHEVYGIWIHTVADRQNIYELIK 202
                 56789***************************************955**********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1573.67
//
Query:       CCD26145.2  [L=365]
Description: hypothetical protein NDAI_0G03680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       490  (0.02733); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2616.74
//
Query:       CCD26146.2  [L=747]
Description: hypothetical protein NDAI_0G03690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-69  233.4  38.4    2.5e-69  233.4  38.4    6.0  5  Spt20     Spt20 family
  ------ inclusion threshold ------
      0.015   15.8   5.0      0.015   15.8   5.0    4.2  4  DUF4598   Domain of unknown function (DUF4598)
       0.57   10.7   6.1      0.083   13.4   1.0    2.2  2  PSD4      Protein of unknown function (DUF1592)


Domain annotation for each model (and alignments):
>> Spt20  Spt20 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   5.1     0.067     4e+02     111     131 ..      63      86 ..      35     102 .. 0.59
   2 !  233.4  38.4   4.2e-73   2.5e-69       2     232 ..     116     365 ..     115     366 .. 0.84
   3 ?    0.0   1.4     0.088   5.3e+02     106     162 ..     407     464 ..     381     475 .. 0.57
   4 ?  -14.2  29.5         3   1.8e+04     116     167 ..     569     620 ..     479     645 .. 0.64
   5 ?   -4.9   4.7       2.9   1.8e+04     131     137 ..     714     720 ..     639     734 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.067
       Spt20 111 q...qnqqqqqqqqqqqqqqqqqq 131
                 +   q+q+ qqq+q+   qqqqqq
  CCD26146.2  63 AmlmQQQKLQQQKQRLLLQQQQQQ 86 
                 134333333333333333333322 PP

  == domain 2  score: 233.4 bits;  conditional E-value: 4.2e-73
       Spt20   2 lekllkkyeeklpslelhlypnhfrfslkln..lqsqekkkensseslrlpynsel.kelleyvdretiPealmelLrdanikfYeGclIvqvrDhrns 97 
                 ++++lkkye+++ps+e+h+y+n++++++++n  lq+q+ ++e+s+ +l l++n+e+ ke+leyv+r++iPea+me+L+d+ni+fYeG+lI+qv+Dh+n+
  CCD26146.2 116 TDSILKKYEQYRPSFEFHIYENNYKICAPANtrLQQQQRSPEISNGGLVLNKNNETlKEFLEYVARGRIPEAIMEVLKDSNIQFYEGNLILQVYDHTNT 214
                 799************************************************************************************************ PP

       Spt20  98 vaqsqktqdqkqsqqnqqqqqqqqqqqqqqqq.......................qqeqqqqqnekdsttteekekksksknnssksktttkkpkvyrt 173
                 v+++ ++    ++qq+qqqqqqqqqqq++q q                       +    +++ +k+++  +++    ++++ +++++ t+k+p+vyrt
  CCD26146.2 215 VDIKPNE---TKQQQQQQQQQQQQQQQPNQPQslnatsqnqnikqesnvqssppvS----NNAVNKQQSPAQSSPSSTQNQQHQQQQQPTIKRPRVYRT 306
                 ***8544...4444555555555556666655668999999999998774422221....22222233333333333344445566677899******* PP

       Spt20 174 LLrptpqslladlqllastsrlsdedylelEselllataepLclepspnvykqrqllns 232
                 LLrp++++ ++d++++a+ +r+sd  y++lEse+l +t+++L+l++++n+y++++ l++
  CCD26146.2 307 LLRPNDLTNYYDMMSYADYTRFSDGVYQQLESEILSLTKRNLNLSVPLNPYEHKDKLED 365
                 *******************************************************9987 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.088
       Spt20 106 dqkqsqqnqqqqqqqqqqqqqqqq.....qqeqqqqqnekdsttteekekksksknnssksk 162
                 +q +s+++q     +++++++ ++          +++++k+++  ++ +  sk +nn+sk  
  CCD26146.2 407 PQHSSNYEQLMLIMSERTSTTTNStfaitL----AKNSSKANAGINTANASSKGNNNTSKAS 464
                 444455666666666666666666644441....4444444555555555555555544433 PP

  == domain 4  score: -14.2 bits;  conditional E-value: 3
       Spt20 116 qqqqqqqqqqqqqqqqeqqqqqnekdsttteekekksksknnssksktttkk 167
                 +  ++q qqqq++q+q  + ++ +  +++ +++ k++k  +n+++++t+t +
  CCD26146.2 569 APSSAQGQQQQKNQKQPGKGTKRGAGNKSASDTPKPKKPRKNKENTNTNTIR 620
                 2234444555555555566666666666666666666666666666655544 PP

  == domain 5  score: -4.9 bits;  conditional E-value: 2.9
       Spt20 131 qeqqqqq 137
                 qeqqqqq
  CCD26146.2 714 QEQQQQQ 720
                 1111111 PP

>> DUF4598  Domain of unknown function (DUF4598)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.8   5.0   2.5e-06     0.015      12      98 ..     165     256 ..     164     268 .. 0.65
   2 ?    0.1   1.2      0.18   1.1e+03      63      96 ..     275     308 ..     255     315 .. 0.49
   3 ?   -3.1   2.8       1.8     1e+04      80      99 ..     462     481 ..     389     545 .. 0.64
   4 ?   -2.3   1.0         1     6e+03      61      77 ..     591     607 ..     566     625 .. 0.41

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.5e-06
     DUF4598  12 lkaaNkkLek...eiaagkvadleidevdddeeqyIEMnLgLGvleekrdeesesdsdsssddedsesdekeesakke..kesnvldkllgk 98 
                 l++ N+ L++    +a g++ +  ++ ++d++ q+ E nL L v + ++  + + +++++++++++++++++++ ++    +++  ++ +++
  CCD26146.2 165 LNKNNETLKEfleYVARGRIPEAIMEVLKDSNIQFYEGNLILQVYDHTNTVDIKPNETKQQQQQQQQQQQQQQQPNQPqsLNATSQNQNIKQ 256
                 67778887752226899******************************988885555555555555555544444433323233333333333 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.18
     DUF4598  63 sdsdsssddedsesdekeesakkekesnvldkll 96 
                 ++  +ss +++++++++++++ + k ++v ++ll
  CCD26146.2 275 QSPAQSSPSSTQNQQHQQQQQPTIKRPRVYRTLL 308
                 1222222222222222223333336666666555 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.8
     DUF4598  80 eesakkekesnvldkllgkk 99 
                 ++s+ ++++s + + ll+++
  CCD26146.2 462 KASSISASNSGASGGLLSAS 481
                 22222334444444444433 PP

  == domain 4  score: -2.3 bits;  conditional E-value: 1
     DUF4598  61 sesdsdsssddedsesd 77 
                  +++++s+sd  ++++ 
  CCD26146.2 591 RGAGNKSASDTPKPKKP 607
                 22222222222222222 PP

>> PSD4  Protein of unknown function (DUF1592)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.0   1.4e-05     0.083      29      81 ..      62     112 ..      57     144 .. 0.70
   2 ?   -3.4   0.3       2.2   1.3e+04      47      92 ..     193     238 ..     183     256 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
        PSD4  29 egeLrtpeeleaqvermladpraralveeFarqwlelerletvekdkelfpef 81 
                 +  L ++++l++q +r+l ++++++++++F +q+++l  l t++k +++  +f
  CCD26146.2  62 KAMLMQQQKLQQQKQRLLLQQQQQQALHNFENQFYQL--LMTINKRPKRIYNF 112
                 5678899****************************99..44444444333333 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.2
        PSD4  47 adpraralveeFarqwlelerletvekdkelfpefdealreamree 92 
                 +d++ +    + + q ++ ++  ++++++++ ++ +++ +++ +++
  CCD26146.2 193 KDSNIQFYEGNLILQVYDHTNTVDIKPNETKQQQQQQQQQQQQQQQ 238
                 5555555555556666666666666666666655544444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3595  (0.200513); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                       127  (0.0070835); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.62u 0.38s 00:00:02.00 Elapsed: 00:00:00.62
# Mc/sec: 3651.32
//
Query:       CCD26147.2  [L=251]
Description: hypothetical protein NDAI_0G03700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-60  204.3   1.8    1.9e-60  204.1   1.8    1.0  1  PEX11     Peroxisomal biogenesis factor 11 (PEX11)


Domain annotation for each model (and alignments):
>> PEX11  Peroxisomal biogenesis factor 11 (PEX11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.1   1.8   1.1e-64   1.9e-60       2     223 .]      13     244 ..      12     244 .. 0.95

  Alignments for each domain:
  == domain 1  score: 204.1 bits;  conditional E-value: 1.1e-64
       PEX11   2 dklvkflaqtqgrDKllRalqYasrllayllerkgsskelvkklkklesqfslsRKllRlgkflehlqaaaklld.nkle..dpvlrllavlrnlgyal 97 
                 ++lvkfl++t+gr+K+lR+lqY++r +a         ++ +  +k l+ +f+++RKllR++k+l+hlq a+k+l  ++ +  d ++++++vl+nl +a+
  CCD26147.2  13 THLVKFLDTTAGREKVLRLLQYLCRVIAL--------NQKSPLAKGLQMEFTMIRKLLRFLKPLNHLQLASKFLVmTSGKdeDFIIKYCNVLKNLFFAI 103
                 79*************************65........77899*****************************98875444478***************** PP

       PEX11  98 YlllDhvlwlkklgllkvknak..klsrlssrfwlfglvlslvrdlyelrllqekekklkkekkekeereeek.............laavlkkrpalll 181
                 Yl lD+v++++ l+l++v++ +  k++r++++fwlf+lv+++v+dl+++++ + + ++   +kk+++++++               l+ + k+++a+++
  CCD26147.2 104 YLSLDQVNLFRLLKLIPVTPFTgqKVPRWANFFWLFALVSGIVMDLRKIQTTEIQLRNELFAKKSEQSTTQVAgktvpspsfdktkLKIITKEKYAAVR 202
                 *********************************************************99998877777777778999********************** PP

       PEX11 182 dlvknllDllialnelgilklsdgvvGlaGliSSllgllqlw 223
                 +lv++++D +i+ln+l++lk+ d +vG+aG+++Sl+gl++lw
  CCD26147.2 203 RLVWDCADSFIVLNNLNYLKSRDDYVGMAGVVTSLFGLQDLW 244
                 *****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1815.79
//
Query:       CCD26148.2  [L=1121]
Description: hypothetical protein NDAI_0G03710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.5e-23   79.8  30.8    0.00028   20.8   0.0   13.4 13  TPR_2       Tetratricopeptide repeat
    3.7e-21   74.0  47.9    9.5e-06   25.2   0.0   12.9 14  TPR_1       Tetratricopeptide repeat
    1.1e-17   64.3   2.5    7.1e-05   23.2   0.0    8.5  9  TPR_19      Tetratricopeptide repeat
    1.2e-16   60.8  11.4       0.03   14.6   0.8   10.7 10  TPR_12      Tetratricopeptide repeat
    4.5e-16   57.7  32.6     0.0037   17.4   0.2   13.5 14  TPR_8       Tetratricopeptide repeat
    1.9e-15   56.2   0.0      0.032   15.1   0.0   10.7 11  TPR_14      Tetratricopeptide repeat
      1e-13   51.6   0.0     0.0027   18.3   0.0    6.7  8  TPR_16      Tetratricopeptide repeat
    1.3e-09   38.0  20.7       0.36   11.6   0.0   11.5 12  TPR_6       Tetratricopeptide repeat
    1.4e-09   38.0  12.8      0.013   15.7   0.2    7.1  6  ANAPC3      Anaphase-promoting complex, cyclosome, subunit 3
      4e-09   35.8  10.1        3.9    7.7   0.0    9.0  9  TPR_7       Tetratricopeptide repeat
    1.1e-07   31.7  12.0       0.55   10.7   0.0   10.4 11  TPR_17      Tetratricopeptide repeat
    2.7e-05   23.7  24.6       0.33   10.7   0.4    8.5 10  TPR_11      TPR repeat
  ------ inclusion threshold ------
      0.014   15.3  16.9       0.92    9.5   0.2    9.4 11  TPR_10      Tetratricopeptide repeat
        4.3    7.5  11.7        6.8    6.9   0.0    5.6  6  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.065        83       4      31 ..      68      95 ..      68      96 .. 0.91
   2 ?    4.5   0.0     0.035        45      17      33 ..     133     149 ..     127     150 .. 0.86
   3 !    6.9   0.2     0.006       7.6      10      22 ..     160     172 ..     159     176 .. 0.88
   4 ?    3.0   0.0      0.11   1.4e+02       4      32 ..     200     228 ..     198     228 .. 0.90
   5 !   20.8   0.0   2.2e-07   0.00028       7      34 .]     238     265 ..     235     265 .. 0.95
   6 ?   -1.9   1.3       3.9     5e+03      10      19 ..     323     332 ..     322     332 .. 0.87
   7 !   15.7   0.6   9.5e-06     0.012       7      34 .]     360     387 ..     358     387 .. 0.94
   8 ?   -1.9   0.1       4.1   5.2e+03      19      29 ..     466     476 ..     465     477 .. 0.84
   9 !   10.3   0.0    0.0005      0.64       1      29 [.     488     516 ..     488     519 .. 0.94
  10 ?    3.3   0.1     0.086   1.1e+02       2      27 ..     532     557 ..     531     560 .. 0.83
  11 ?    0.2   0.0      0.87   1.1e+03      16      34 .]     594     612 ..     593     612 .. 0.88
  12 ?    4.3   0.0     0.042        53      17      32 ..     719     734 ..     716     736 .. 0.87
  13 !   15.6   0.0     1e-05     0.013       2      33 ..     771     802 ..     770     803 .. 0.94

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.065
       TPR_2  4 lynlGlayyklgdyeeAleafekAleld 31
                +  ++++y ++g+ +  +e+ + Al+ d
  CCD26148.2 68 WLTIACSYVNQGRIDAGIELIKMALQVD 95
                7789****************99999865 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.035
       TPR_2  17 yeeAleafekAleldPn 33 
                 ++eA++++++A+ ++P+
  CCD26148.2 133 LNEAENCLKEAIGINPT 149
                 59*************98 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.006
       TPR_2  10 ayyklgdyeeAle 22 
                 +yy++g+y++Ale
  CCD26148.2 160 LYYQRGHYDKALE 172
                 7**********98 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.11
       TPR_2   4 lynlGlayyklgdyeeAleafekAleldP 32 
                 l  +++++++++++   l++f++ l  +P
  CCD26148.2 200 LLLRAKLLFRKKNFMASLKLFQELLVNNP 228
                 6689********************98887 PP

  == domain 5  score: 20.8 bits;  conditional E-value: 2.2e-07
       TPR_2   7 lGlayyklgdyeeAleafekAleldPnn 34 
                 +G + ++l+dy+ A++a+e++leldP+n
  CCD26148.2 238 IGACFWQLKDYKMAINAWERSLELDPTN 265
                 799***********************98 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 3.9
       TPR_2  10 ayyklgdyee 19 
                  yy++gdy++
  CCD26148.2 323 YYYYKGDYKK 332
                 59******86 PP

  == domain 7  score: 15.7 bits;  conditional E-value: 9.5e-06
       TPR_2   7 lGlayyklgdyeeAleafekAleldPnn 34 
                  G+ayy+l+dy +A + f+++l+ +++n
  CCD26148.2 360 CGRAYYALNDYRQAFAMFQESLKKNEDN 387
                 59***********************987 PP

  == domain 8  score: -1.9 bits;  conditional E-value: 4.1
       TPR_2  19 eAleafekAle 29 
                 +A++++ek ++
  CCD26148.2 466 KAIKYLEKYIK 476
                 8******9765 PP

  == domain 9  score: 10.3 bits;  conditional E-value: 0.0005
       TPR_2   1 aealynlGlayyklgdyeeAleafekAle 29 
                 ++a++ + ++y+  ++y++ le++ kAle
  CCD26148.2 488 PRAYFVISQLYESTNQYKQSLEYLIKALE 516
                 579*************************8 PP

  == domain 10  score: 3.3 bits;  conditional E-value: 0.086
       TPR_2   2 ealynlGlayyklgdyeeAleafekA 27 
                 e+l+nlG  yy +gd  + +e+f+ A
  CCD26148.2 532 ELLNNLGSFYYMNGDMIKTKEYFQLA 557
                 789***********988877777766 PP

  == domain 11  score: 0.2 bits;  conditional E-value: 0.87
       TPR_2  16 dyeeAleafekAleldPnn 34 
                 +  +A e++e  l+  Pn+
  CCD26148.2 594 NITKAQELYEDILSKHPNY 612
                 6679**********99985 PP

  == domain 12  score: 4.3 bits;  conditional E-value: 0.042
       TPR_2  17 yeeAleafekAleldP 32 
                 y + +++f+k+l++dP
  CCD26148.2 719 YLKSIQLFQKVLQIDP 734
                 66899**********9 PP

  == domain 13  score: 15.6 bits;  conditional E-value: 1e-05
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPn 33 
                 +++ nl+++++++ ++++A+e ++  l+  P+
  CCD26148.2 771 DVHINLANCLLEMREFNKAIENYDLILKKFPK 802
                 5799************************9996 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0032       4.1       4      32 ..      68      96 ..      66      97 .. 0.93
   2 ?    5.2   0.0     0.015        20      18      33 ..     134     149 ..     133     149 .. 0.92
   3 !    6.7   0.3    0.0054       6.9      10      24 ..     160     174 ..     159     175 .. 0.90
   4 ?    1.7   0.0       0.2   2.6e+02       6      32 ..     202     228 ..     199     228 .. 0.85
   5 !   25.2   0.0   7.4e-09   9.5e-06       6      34 .]     237     265 ..     233     265 .. 0.95
   6 !   14.1   0.4   2.4e-05     0.031       8      34 .]     361     387 ..     359     387 .. 0.95
   7 ?   -1.9   0.2       2.7   3.5e+03      19      28 ..     466     475 ..     465     476 .. 0.83
   8 !    7.2   0.1    0.0036       4.6       9      29 ..     496     516 ..     488     517 .. 0.88
   9 !    8.0   0.2     0.002       2.6       2      27 ..     532     557 ..     531     560 .. 0.91
  10 ?   -2.4   0.1         4   5.2e+03      16      34 .]     594     612 ..     593     612 .. 0.82
  11 ?   -2.2   0.2       3.3   4.3e+03       3      13 ..     690     700 ..     689     703 .. 0.78
  12 !    5.9   0.0    0.0092        12      19      34 .]     721     736 ..     715     736 .. 0.87
  13 !   19.5   0.1   4.8e-07   0.00062       2      32 ..     771     801 ..     770     803 .. 0.91
  14 ?   -1.8   0.0       2.6   3.3e+03       1       9 [.     814     822 ..     814     826 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0032
                HHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1  4 lynlGnayfklgkydeAleyyekALelnP 32
                +  ++  y ++g+ d  +e  + AL++++
  CCD26148.2 68 WLTIACSYVNQGRIDAGIELIKMALQVDH 96
                77899*********************985 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.015
                 HHHHHHHHHHHHHSTT CS
       TPR_1  18 deAleyyekALelnPn 33 
                 +eA+ + ++A+ +nP+
  CCD26148.2 134 NEAENCLKEAIGINPT 149
                 79*************6 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.0054
                 HHHHTT-HHHHHHHH CS
       TPR_1  10 ayfklgkydeAleyy 24 
                 +y++ g yd+Ale +
  CCD26148.2 160 LYYQRGHYDKALETC 174
                 7***********987 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.2
                 HHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   6 nlGnayfklgkydeAleyyekALelnP 32 
                  ++ ++f+++++   l+ +++ L  nP
  CCD26148.2 202 LRAKLLFRKKNFMASLKLFQELLVNNP 228
                 6899****************9776665 PP

  == domain 5  score: 25.2 bits;  conditional E-value: 7.4e-09
                 HHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   6 nlGnayfklgkydeAleyyekALelnPnn 34 
                 ++G+++ +l++y+ A+ + e+ Lel+P+n
  CCD26148.2 237 GIGACFWQLKDYKMAINAWERSLELDPTN 265
                 68*************************98 PP

  == domain 6  score: 14.1 bits;  conditional E-value: 2.4e-05
                 HHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPnn 34 
                 G ay+ l++y +A + +++ L+ n++n
  CCD26148.2 361 GRAYYALNDYRQAFAMFQESLKKNEDN 387
                 789*********************997 PP

  == domain 7  score: -1.9 bits;  conditional E-value: 2.7
                 HHHHHHHHHH CS
       TPR_1  19 eAleyyekAL 28 
                 +A++y ek +
  CCD26148.2 466 KAIKYLEKYI 475
                 8*****9966 PP

  == domain 8  score: 7.2 bits;  conditional E-value: 0.0036
                 HHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   9 nayfklgkydeAleyyekALe 29 
                 ++y + ++y++ ley  kALe
  CCD26148.2 496 QLYESTNQYKQSLEYLIKALE 516
                 689*****************8 PP

  == domain 9  score: 8.0 bits;  conditional E-value: 0.002
                 HHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekA 27 
                 + l+nlG  y+ +g+  +  ey++ A
  CCD26148.2 532 ELLNNLGSFYYMNGDMIKTKEYFQLA 557
                 689********************987 PP

  == domain 10  score: -2.4 bits;  conditional E-value: 4
                 -HHHHHHHHHHHHHHSTTH CS
       TPR_1  16 kydeAleyyekALelnPnn 34 
                 +  +A e ye  L+  Pn+
  CCD26148.2 594 NITKAQELYEDILSKHPNY 612
                 5678999999999999986 PP

  == domain 11  score: -2.2 bits;  conditional E-value: 3.3
                 HHHHHHHHHHH CS
       TPR_1   3 alynlGnayfk 13 
                 al  lGn+y  
  CCD26148.2 690 ALISLGNLYCI 700
                 8999****965 PP

  == domain 12  score: 5.9 bits;  conditional E-value: 0.0092
                 HHHHHHHHHHHHSTTH CS
       TPR_1  19 eAleyyekALelnPnn 34 
                 + ++ ++k+L+++P n
  CCD26148.2 721 KSIQLFQKVLQIDPMN 736
                 789***********65 PP

  == domain 13  score: 19.5 bits;  conditional E-value: 4.8e-07
                 HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST CS
       TPR_1   2 kalynlGnayfklgkydeAleyyekALelnP 32 
                 +++ nl+n+++++ ++++A+e y+  L+  P
  CCD26148.2 771 DVHINLANCLLEMREFNKAIENYDLILKKFP 801
                 6899*******************99888777 PP

  == domain 14  score: -1.8 bits;  conditional E-value: 2.6
                 HHHHHHHHH CS
       TPR_1   1 akalynlGn 9  
                 ak++y +G+
  CCD26148.2 814 AKTWYSRGL 822
                 799****97 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.6   4.7e+03      35      53 ..      75      93 ..      61      96 .. 0.77
   2 !    7.2   0.0    0.0056       7.2       9      49 ..     135     175 ..     133     188 .. 0.79
   3 ?    0.6   0.0      0.66   8.4e+02       4      29 ..     245     270 ..     237     291 .. 0.84
   4 !   17.3   0.1   4.1e-06    0.0052       3      49 ..     366     412 ..     364     424 .. 0.88
   5 ?   -0.7   0.0       1.7   2.2e+03      30      54 ..     493     517 ..     466     519 .. 0.77
   6 ?    3.4   0.0     0.084   1.1e+02       6      29 ..     594     617 ..     590     625 .. 0.81
   7 ?    6.0   0.0     0.014        18      11      53 ..     723     765 ..     717     766 .. 0.93
   8 !   23.2   0.0   5.5e-08   7.1e-05       4      67 ..     750     815 ..     747     816 .. 0.87
   9 ?   -3.1   0.0       9.2   1.2e+04      41      50 ..     893     902 ..     889     905 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.6
      TPR_19 35 llalgqldeAealLdalpe 53
                ++++g++d+ ++l++ +++
  CCD26148.2 75 YVNQGRIDAGIELIKMALQ 93
                8889999988888877664 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0056
      TPR_19   9 eAlalleqalqedpknaearllLAeallalgqldeAealLd 49 
                 eA + l++a+  +p      l+ ++++++ g++d+A +++d
  CCD26148.2 135 EAENCLKEAIGINPTWVCNMLATVDLYYQRGHYDKALETCD 175
                 677777777777775555555559**************987 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.66
      TPR_19   4 egdyaeAlalleqalqedpknaearl 29 
                  +dy  A+++ e+ l+ dp n + + 
  CCD26148.2 245 LKDYKMAINAWERSLELDPTNKNSKV 270
                 579999*************9876655 PP

  == domain 4  score: 17.3 bits;  conditional E-value: 4.1e-06
      TPR_19   3 aegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLd 49 
                 a +dy +A a++++ l+++ +n+  +l+L + +++++ l+e   + +
  CCD26148.2 366 ALNDYRQAFAMFQESLKKNEDNLLSKLGLGQTQIKTNLLEESVLTFE 412
                 568************************************99776665 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 1.7
      TPR_19  30 lLAeallalgqldeAealLdalpee 54 
                    +++ +++q+++  + L +++ee
  CCD26148.2 493 VISQLYESTNQYKQSLEYLIKALEE 517
                 457899999**99999998877765 PP

  == domain 6  score: 3.4 bits;  conditional E-value: 0.084
      TPR_19   6 dyaeAlalleqalqedpknaearl 29 
                 + + A++l+e +l++ p++  a++
  CCD26148.2 594 NITKAQELYEDILSKHPNYISAKI 617
                 678899999999999999876665 PP

  == domain 7  score: 6.0 bits;  conditional E-value: 0.014
      TPR_19  11 lalleqalqedpknaearllLAeallalgqldeAealLdalpe 53 
                 ++l++++lq dp n  a+ + A++  ++++l  A ++L ++ +
  CCD26148.2 723 IQLFQKVLQIDPMNVFAAQGIAIIFAESKRLGPALEILRKVRD 765
                 79************************************98865 PP

  == domain 8  score: 23.2 bits;  conditional E-value: 5.5e-08
      TPR_19   4 egdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpd..d.aryasLlAk 67 
                 ++++  Al++l+++  ++ +n+++ ++LA++ll++ ++++A++  d +++++p+  + + + +LlAk
  CCD26148.2 750 SKRLGPALEILRKV-RDSIDNEDVHINLANCLLEMREFNKAIENYDLILKKFPKisNkSHILNLLAK 815
                 5667779******7.99999*********************************97755777777776 PP

  == domain 9  score: -3.1 bits;  conditional E-value: 9.2
      TPR_19  41 ldeAealLda 50 
                 ld+A+++L++
  CCD26148.2 893 LDDAINILKE 902
                 4555555554 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       3.5   4.5e+03      13      33 ..      75      95 ..      67     117 .. 0.79
   2 ?    3.1   0.0     0.093   1.2e+02      53      66 ..     159     172 ..     150     175 .. 0.75
   3 !    9.8   0.0   0.00075      0.96      42      75 ..     229     262 ..     197     264 .. 0.70
   4 ?    2.2   0.1      0.17   2.2e+02      53      70 ..     322     339 ..     301     342 .. 0.70
   5 !   14.6   0.8   2.3e-05      0.03      12      73 ..     323     382 ..     315     386 .. 0.86
   6 !    9.1   0.0    0.0013       1.6      21      73 ..     466     516 ..     464     516 .. 0.83
   7 ?    6.1   0.0      0.01        13       5      31 ..     533     559 ..     530     608 .. 0.77
   8 ?    4.1   0.0     0.045        58      25      72 ..     718     764 ..     710     769 .. 0.80
   9 !    7.0   0.0    0.0057       7.3       6      30 ..     773     797 ..     768     816 .. 0.82
  10 ?   -3.3   0.0       9.2   1.2e+04       3      34 ..     870     901 ..     868     903 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 3.5
      TPR_12 13 lrrlgrydeAlellekaleia 33
                +  +gr d  +el + al++ 
  CCD26148.2 75 YVNQGRIDAGIELIKMALQVD 95
                677999999999999999876 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.093
      TPR_12  53 rlyralgryeeAle 66 
                 +ly+++g+y++Ale
  CCD26148.2 159 DLYYQRGHYDKALE 172
                 56788888888876 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00075
      TPR_12  42 pltattlrnLgrlyralgryeeAlelleealaia 75 
                  l    ++++g ++++l++y+ A+++ e++l+++
  CCD26148.2 229 VLKPDPRIGIGACFWQLKDYKMAINAWERSLELD 262
                 4555567888999999999999999999999875 PP

  == domain 4  score: 2.2 bits;  conditional E-value: 0.17
      TPR_12  53 rlyralgryeeAlellee 70 
                  +y++ g+y++ l+++ee
  CCD26148.2 322 SYYYYKGDYKKILNIYEE 339
                 357788999999999987 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 2.3e-05
      TPR_12  12 vlrrlgrydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                  +++ g+y + l ++e+ +  ++++   +   ++++    gr+y+al++y++A ++++e+l+
  CCD26148.2 323 YYYYKGDYKKILNIYEERIKPISSI--VTDTILSESTLWCGRAYYALNDYRQAFAMFQESLK 382
                 5788999999999999999999888..6666899999999********************96 PP

  == domain 6  score: 9.1 bits;  conditional E-value: 0.0013
      TPR_12  21 eAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                 +A+++lek +   ++    + +   ++++ +++ly+ +++y++ le+l +al+
  CCD26148.2 466 KAIKYLEKYIKSTNSK--RNQLVIPRAYFVISQLYESTNQYKQSLEYLIKALE 516
                 5677777777777666..67777889**********************99997 PP

  == domain 7  score: 6.1 bits;  conditional E-value: 0.01
      TPR_12   5 alnnlaavlrrlgrydeAlellekale 31 
                 +lnnl+++++  g++ +  e+++ a e
  CCD26148.2 533 LLNNLGSFYYMNGDMIKTKEYFQLAKE 559
                 7899******************98865 PP

  == domain 8  score: 4.1 bits;  conditional E-value: 0.045
      TPR_12  25 llekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeal 72 
                  + k++++++++l  d p  + + +++++++ +++r+  Ale+l+++ 
  CCD26148.2 718 SYLKSIQLFQKVLQID-PMNVFAAQGIAIIFAESKRLGPALEILRKVR 764
                 5667777777777664.778899999*****************99986 PP

  == domain 9  score: 7.0 bits;  conditional E-value: 0.0057
      TPR_12   6 lnnlaavlrrlgrydeAlellekal 30 
                 + nla++l+++ ++ +A+e+++  l
  CCD26148.2 773 HINLANCLLEMREFNKAIENYDLIL 797
                 669****************998776 PP

  == domain 10  score: -3.3 bits;  conditional E-value: 9.2
      TPR_12   3 atalnnlaavl.rrlgrydeAlellekaleiar 34 
                 a +l ++ +v  rr ++++++ + l+ a++i +
  CCD26148.2 870 AETL-RRSNVKeRRIKDLQKSVKGLDDAINILK 901
                 5555.6666665668888888888888877765 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.022        28       4      29 ..      68      93 ..      67      95 .. 0.88
   2 !    6.8   0.1    0.0069       8.9      15      32 ..     131     148 ..     126     149 .. 0.88
   3 ?    2.1   0.0      0.22   2.9e+02       9      24 ..     159     174 ..     151     179 .. 0.80
   4 !   13.0   0.0   7.4e-05     0.095       7      34 .]     238     265 ..     235     265 .. 0.92
   5 ?   -2.7   0.7         8     1e+04      10      25 ..     323     338 ..     315     339 .. 0.70
   6 !    7.1   0.2    0.0057       7.4       8      29 ..     361     382 ..     358     387 .. 0.89
   7 ?   -0.4   0.0       1.4   1.8e+03       7      28 ..     394     415 ..     390     420 .. 0.83
   8 ?    2.7   0.1      0.15   1.9e+02      19      30 ..     466     477 ..     464     480 .. 0.87
   9 !   17.4   0.2   2.9e-06    0.0037       2      29 ..     489     516 ..     488     517 .. 0.96
  10 ?    4.3   0.2     0.043        55       2      27 ..     532     557 ..     531     559 .. 0.91
  11 ?   -2.0   0.0       4.8   6.2e+03       4      27 ..     581     605 ..     579     607 .. 0.70
  12 ?    3.9   0.0     0.062        79       3      30 ..     697     725 ..     695     734 .. 0.77
  13 ?    5.6   0.1     0.017        21       3      26 ..     772     795 ..     770     798 .. 0.87
  14 ?   -2.9   0.0       8.9   1.1e+04       5      29 ..     867     891 ..     865     891 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.022
                HHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8  4 yynlgsiylklgdyeeAkeyyekale 29
                ++ +++ y ++g++++ +e ++ al+
  CCD26148.2 68 WLTIACSYVNQGRIDAGIELIKMALQ 93
                889***************99887776 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0069
                 T-HHHHHHHHHHHHHHHH CS
       TPR_8  15 gdyeeAkeyyekaleldp 32 
                 + ++eA+ ++++a+ ++p
  CCD26148.2 131 KYLNEAENCLKEAIGINP 148
                 7899*************9 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.22
                 HHHHHTT-HHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyy 24 
                 ++y + g y++A e++
  CCD26148.2 159 DLYYQRGHYDKALETC 174
                 79**********9976 PP

  == domain 4  score: 13.0 bits;  conditional E-value: 7.4e-05
                 HHHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8   7 lgsiylklgdyeeAkeyyekaleldpdn 34 
                 +g + ++l+dy++A+ + e+ leldp+n
  CCD26148.2 238 IGACFWQLKDYKMAINAWERSLELDPTN 265
                 67789*********************86 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 8
                 HHHHTT-HHHHHHHHH CS
       TPR_8  10 iylklgdyeeAkeyye 25 
                  y  +gdy++    ye
  CCD26148.2 323 YYYYKGDYKKILNIYE 338
                 4689999998666666 PP

  == domain 6  score: 7.1 bits;  conditional E-value: 0.0057
                 HHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   8 gsiylklgdyeeAkeyyekale 29 
                 g++y  l+dy +A + +++ l+
  CCD26148.2 361 GRAYYALNDYRQAFAMFQESLK 382
                 89*****************998 PP

  == domain 7  score: -0.4 bits;  conditional E-value: 1.4
                 HHHHHHHTT-HHHHHHHHHHHH CS
       TPR_8   7 lgsiylklgdyeeAkeyyekal 28 
                 lg++ +k++ +ee++ ++e   
  CCD26148.2 394 LGQTQIKTNLLEESVLTFENIY 415
                 99************99998665 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.15
                 HHHHHHHHHHHH CS
       TPR_8  19 eAkeyyekalel 30 
                 +A++y+ek+++ 
  CCD26148.2 466 KAIKYLEKYIKS 477
                 8********985 PP

  == domain 9  score: 17.4 bits;  conditional E-value: 2.9e-06
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekale 29 
                 +ay+ ++++y+++++y+++ ey+ kale
  CCD26148.2 489 RAYFVISQLYESTNQYKQSLEYLIKALE 516
                 89************************97 PP

  == domain 10  score: 4.3 bits;  conditional E-value: 0.043
                 CHHHHHHHHHHHTT-HHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyeka 27 
                 e+++nlgs y   gd+ + key++ a
  CCD26148.2 532 ELLNNLGSFYYMNGDMIKTKEYFQLA 557
                 789********************987 PP

  == domain 11  score: -2.0 bits;  conditional E-value: 4.8
                 HHHHHHHH.HHTT-HHHHHHHHHHH CS
       TPR_8   4 yynlgsiy.lklgdyeeAkeyyeka 27 
                  yn+++ + ++ +++ +A+e ye  
  CCD26148.2 581 NYNIARSLeSEPENITKAQELYEDI 605
                 5777755546667888999999865 PP

  == domain 12  score: 3.9 bits;  conditional E-value: 0.062
                 HHHHHHHHH.HHTT-HHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiy.lklgdyeeAkeyyekalel 30 
                 +y+ +g+ + ++ ++ e++k +y k ++l
  CCD26148.2 697 LYCIIGRECrKNVKEQEKSKHSYLKSIQL 725
                 57888866668888889999999998877 PP

  == domain 13  score: 5.6 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHTT-HHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyek 26 
                 ++ nl++++l++ ++++A+e y  
  CCD26148.2 772 VHINLANCLLEMREFNKAIENYDL 795
                 688*****************9975 PP

  == domain 14  score: -2.9 bits;  conditional E-value: 8.9
                 HHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_8   5 ynlgsiylklgdyeeAkeyyekale 29 
                 ++++ +++  + +e  ++ ++k ++
  CCD26148.2 867 FQIAETLRRSNVKERRIKDLQKSVK 891
                 7889999999989999999999875 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.48   6.1e+02      11      29 ..      75      93 ..      66     100 .. 0.87
   2 ?   -2.3   0.0       9.2   1.2e+04      19      33 ..     135     149 ..     131     151 .. 0.86
   3 ?    1.8   0.0      0.46   5.9e+02       6      24 ..     156     174 ..     153     189 .. 0.84
   4 ?    2.6   0.0      0.25   3.2e+02       4      32 ..     200     228 ..     198     235 .. 0.91
   5 !    7.9   0.0    0.0049       6.3       9      34 ..     240     265 ..     232     277 .. 0.80
   6 ?   -1.9   0.0       6.7   8.6e+03       9      28 ..     322     341 ..     315     342 .. 0.76
   7 !   15.1   0.0   2.5e-05     0.032       4      43 ..     357     396 ..     354     397 .. 0.90
   8 ?    2.0   0.0      0.38   4.8e+02       1      29 [.     488     516 ..     488     525 .. 0.90
   9 ?    5.9   0.0     0.021        28      15      38 ..     593     616 ..     582     619 .. 0.79
  10 ?    0.7   0.0         1   1.3e+03       6      42 ..     742     777 ..     737     779 .. 0.79
  11 ?    1.0   0.0       0.8     1e+03       7      33 ..     776     802 ..     770     805 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.48
      TPR_14 11 llalGdpdeAiallrrala 29
                + ++G+ d+ i+l + al+
  CCD26148.2 75 YVNQGRIDAGIELIKMALQ 93
                889**************98 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 9.2
      TPR_14  19 eAiallrralalaPd 33 
                 eA+++l++a+  +P+
  CCD26148.2 135 EAENCLKEAIGINPT 149
                 89*******999985 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 0.46
      TPR_14   6 alaeallalGdpdeAiall 24 
                 a +++++++G +d+A++ +
  CCD26148.2 156 ATVDLYYQRGHYDKALETC 174
                 557889*********9976 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.25
      TPR_14   4 llalaeallalGdpdeAiallrralalaP 32 
                 ll++a++l++  ++ ++++l++++l  +P
  CCD26148.2 200 LLLRAKLLFRKKNFMASLKLFQELLVNNP 228
                 6899********************99877 PP

  == domain 5  score: 7.9 bits;  conditional E-value: 0.0049
      TPR_14   9 eallalGdpdeAiallrralalaPdd 34 
                 + +++l d++ Ai++ +r l+l+P++
  CCD26148.2 240 ACFWQLKDYKMAINAWERSLELDPTN 265
                 5689********************76 PP

  == domain 6  score: -1.9 bits;  conditional E-value: 6.7
      TPR_14   9 eallalGdpdeAiallrral 28 
                 ++++  Gd+++ ++++++++
  CCD26148.2 322 SYYYYKGDYKKILNIYEERI 341
                 457789**********9987 PP

  == domain 7  score: 15.1 bits;  conditional E-value: 2.5e-05
      TPR_14   4 llalaeallalGdpdeAiallrralalaPddaeawlllaq 43 
                 +l  ++a++al d+++A a++++ l+++ d++   l l+q
  CCD26148.2 357 TLWCGRAYYALNDYRQAFAMFQESLKKNEDNLLSKLGLGQ 396
                 67789**************************998888877 PP

  == domain 8  score: 2.0 bits;  conditional E-value: 0.38
      TPR_14   1 peallalaeallalGdpdeAiallrrala 29 
                 p+a+  + ++++   ++++++++l +al+
  CCD26148.2 488 PRAYFVISQLYESTNQYKQSLEYLIKALE 516
                 678888999*****************998 PP

  == domain 9  score: 5.9 bits;  conditional E-value: 0.021
      TPR_14  15 GdpdeAiallrralalaPddaeaw 38 
                 ++  +A +l++++l+++P+   a 
  CCD26148.2 593 ENITKAQELYEDILSKHPNYISAK 616
                 57899*************987765 PP

  == domain 10  score: 0.7 bits;  conditional E-value: 1
      TPR_14   6 alaeallalGdpdeAiallrralalaPddaeawllla 42 
                  +a +++++ ++  A+++lr++ ++  d++++++ la
  CCD26148.2 742 GIAIIFAESKRLGPALEILRKV-RDSIDNEDVHINLA 777
                 5789999*************99.55667777777776 PP

  == domain 11  score: 1.0 bits;  conditional E-value: 0.8
      TPR_14   7 laeallalGdpdeAiallrralalaPd 33 
                 la  ll+ +++ +Ai+ ++ +l+++P+
  CCD26148.2 776 LANCLLEMREFNKAIENYDLILKKFPK 802
                 78889999*****************97 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.78   9.9e+02       3      21 ..      71      89 ..      55      96 .. 0.69
   2 ?    3.0   0.0      0.13   1.7e+02       3      18 ..     157     172 ..     155     178 .. 0.81
   3 !   18.3   0.0   2.1e-06    0.0027       2      66 ..     202     264 ..     201     266 .. 0.92
   4 !   16.4   0.0   8.5e-06     0.011       4      56 ..     361     410 ..     361     418 .. 0.89
   5 ?   -2.6   0.0       7.1     9e+03      17      56 ..     468     510 ..     466     517 .. 0.59
   6 ?   -1.6   0.0       3.4   4.4e+03      12      31 ..     594     610 ..     593     615 .. 0.87
   7 ?   -2.4   0.0       6.2   7.9e+03      19      60 ..     725     763 ..     719     768 .. 0.72
   8 ?    2.8   0.0      0.15   1.9e+02       2      52 ..     775     825 ..     774     840 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.78
      TPR_16  3 laraalragdyddAaaale 21
                 a +++++g+ d+ +++ +
  CCD26148.2 71 IACSYVNQGRIDAGIELIK 89
                5666777777776666554 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.13
      TPR_16   3 laraalragdyddAaa 18 
                   ++++++g+yd+A++
  CCD26148.2 157 TVDLYYQRGHYDKALE 172
                 5678999999999986 PP

  == domain 3  score: 18.3 bits;  conditional E-value: 2.1e-06
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPd.aaeAllllgdaalrqgrlaeAa.alyraalraapd 66 
                  +a++++r +++ + +++++++l ++   P+  ++ + + g +++++++++ A+ a+ r++ + +p 
  CCD26148.2 202 LRAKLLFRKKNFMASLKLFQELLVNN---PVlKPDPRIGIGACFWQLKDYKMAInAWERSL-ELDPT 264
                 689***********************...777*************************9997.77775 PP

  == domain 4  score: 16.4 bits;  conditional E-value: 8.5e-06
      TPR_16   4 araalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaal 56 
                 +ra+++++dy++A a++++ lk++    d+  + l+lg+   + + l+e +  
  CCD26148.2 361 GRAYYALNDYRQAFAMFQESLKKN---EDNLLSKLGLGQTQIKTNLLEESVLT 410
                 79**********************...99999********9999999998843 PP

  == domain 5  score: -2.6 bits;  conditional E-value: 7.1
      TPR_16  17 aaaleaalkrdpssPd...aaeAllllgdaalrqgrlaeAaal 56 
                 +++le ++k+  s       ++A++   +++   + ++  +++
  CCD26148.2 468 IKYLEKYIKSTNSKRNqlvIPRAYFVISQLYESTNQYKQSLEY 510
                 5555555555532222444677888888888888877777744 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 3.4
      TPR_16  12 dyddAaaaleaalkrdpssP 31 
                 + ++A++++e  l ++   P
  CCD26148.2 594 NITKAQELYEDILSKH---P 610
                 6789*********999...5 PP

  == domain 7  score: -2.4 bits;  conditional E-value: 6.2
      TPR_16  19 aleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraa 60 
                 +++ +l  d   P ++ A+ + + ++++ +rl +A++ +r+ 
  CCD26148.2 725 LFQKVLQID---PMNVFAAQGIAIIFAESKRLGPALEILRKV 763
                 566666666...666666667788899999999999888775 PP

  == domain 8  score: 2.8 bits;  conditional E-value: 0.15
      TPR_16   2 alaraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlae 52 
                 +la+ +l+ +++ +A++ ++  lk++p+ +   + l+ll+  ++ +g  ++
  CCD26148.2 775 NLANCLLEMREFNKAIENYDLILKKFPKISNKSHILNLLAKTWYSRGLKEK 825
                 6788899*******************6666688899999888888887665 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0         7     9e+03       6      24 ..      71      89 ..      69      93 .. 0.80
   2 ?    2.7   0.0      0.18   2.3e+02       9      27 ..     160     178 ..     154     179 .. 0.82
   3 ?    3.1   0.1      0.14   1.8e+02       3      31 ..     200     228 ..     200     228 .. 0.92
   4 ?    1.0   0.0      0.65   8.3e+02       6      31 ..     238     263 ..     237     265 .. 0.86
   5 ?   -1.9   0.1       5.5   7.1e+03      10      24 ..     323     338 ..     321     339 .. 0.73
   6 !    8.0   0.2    0.0037       4.8       7      28 ..     361     382 ..     357     386 .. 0.89
   7 ?    0.3   0.0       1.1   1.4e+03      17      28 ..     465     476 ..     458     477 .. 0.89
   8 ?    1.8   0.2      0.36   4.6e+02       2      28 ..     490     516 ..     489     517 .. 0.85
   9 ?   -0.1   0.0       1.5   1.9e+03       6      25 ..     537     556 ..     536     560 .. 0.82
  10 !   11.6   0.0   0.00028      0.36       4      32 ..     582     611 ..     580     612 .. 0.91
  11 ?   -1.4   0.0       3.9   4.9e+03      18      31 ..     721     734 ..     718     734 .. 0.85
  12 !    9.6   0.0    0.0012       1.5       5      32 ..     775     802 ..     771     802 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7
                HHHHHHHHHHHHHHHHHHH CS
       TPR_6  6 lalsyrklgdtdkAleale 24
                +a sy ++g+ d+ +e+ +
  CCD26148.2 71 IACSYVNQGRIDAGIELIK 89
                7899***99*999888755 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHHHH CS
       TPR_6   9 syrklgdtdkAlealerli 27 
                 +y++ g +dkAle+ + ++
  CCD26148.2 160 LYYQRGHYDKALETCDLFV 178
                 799988*******977665 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   3 lyklalsyrklgdtdkAlealerlikeYP 31 
                 l+++a+++++ ++  ++l+++++l+ + P
  CCD26148.2 200 LLLRAKLLFRKKNFMASLKLFQELLVNNP 228
                 7899*999*988************99887 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHHHHHHHHHHHHHH-T CS
       TPR_6   6 lalsyrklgdtdkAlealerlikeYP 31 
                 ++ ++ +l+d+  A+ a+er ++  P
  CCD26148.2 238 IGACFWQLKDYKMAINAWERSLELDP 263
                 7899***99**********9887777 PP

  == domain 5  score: -1.9 bits;  conditional E-value: 5.5
                 HHH.HHHHHHHHHHHH CS
       TPR_6  10 yrk.lgdtdkAleale 24 
                 y+   gd+ k l ++e
  CCD26148.2 323 YYYyKGDYKKILNIYE 338
                 554466**99999998 PP

  == domain 6  score: 8.0 bits;  conditional E-value: 0.0037
                 HHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   7 alsyrklgdtdkAlealerlik 28 
                 +++y++l+d+++A +++++ +k
  CCD26148.2 361 GRAYYALNDYRQAFAMFQESLK 382
                 89****99*********98665 PP

  == domain 7  score: 0.3 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHH CS
       TPR_6  17 dkAlealerlik 28 
                 +kA+++le+ ik
  CCD26148.2 465 SKAIKYLEKYIK 476
                 69********98 PP

  == domain 8  score: 1.8 bits;  conditional E-value: 0.36
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       TPR_6   2 AlyklalsyrklgdtdkAlealerlik 28 
                 A++ + ++y++++++ ++le+l + ++
  CCD26148.2 490 AYFVISQLYESTNQYKQSLEYLIKALE 516
                 7888999****99*******9977665 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 1.5
                 HHHHHHHHHHHHHHHHHHHH CS
       TPR_6   6 lalsyrklgdtdkAlealer 25 
                 l+  y++ gd  k +e+++ 
  CCD26148.2 537 LGSFYYMNGDMIKTKEYFQL 556
                 777899988*********96 PP

  == domain 10  score: 11.6 bits;  conditional E-value: 0.00028
                 HHHHHHHHHHH.HHHHHHHHHHHHHHH-TT CS
       TPR_6   4 yklalsyrklg.dtdkAlealerlikeYPd 32 
                 y++a+s+++   + +kA e++e++++++P+
  CCD26148.2 582 YNIARSLESEPeNITKAQELYEDILSKHPN 611
                 99******7754*****************9 PP

  == domain 11  score: -1.4 bits;  conditional E-value: 3.9
                 HHHHHHHHHHHH-T CS
       TPR_6  18 kAlealerlikeYP 31 
                 k++++++++++  P
  CCD26148.2 721 KSIQLFQKVLQIDP 734
                 6899*****99766 PP

  == domain 12  score: 9.6 bits;  conditional E-value: 0.0012
                 HHHHHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6   5 klalsyrklgdtdkAlealerlikeYPd 32 
                 +la +++++ +  kA+e ++ ++k++P+
  CCD26148.2 775 NLANCLLEMREFNKAIENYDLILKKFPK 802
                 79******99*****************6 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.1   2.6e+03      21      49 ..      61      91 ..      55      96 .. 0.73
   2 !    8.7   0.0    0.0016         2       2      79 ..     164     255 ..     163     258 .. 0.83
   3 ?    2.8   0.1      0.11   1.4e+02       3      49 ..     292     340 ..     291     353 .. 0.76
   4 !   15.7   0.2   9.9e-06     0.013      23      80 ..     354     412 ..     345     414 .. 0.91
   5 ?    3.5   0.2     0.066        84       6      49 ..     465     514 ..     462     519 .. 0.76
   6 !    9.1   0.0    0.0011       1.5      36      78 ..     750     792 ..     715     818 .. 0.76

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 2.1
                --HHHHHHH..HHHHHHTT-HHHHHHHHHCT CS
      ANAPC3 21 espedayll..AlclylngqykrAyellrka 49
                es++  ++l  A ++ ++g+ +  +el++ a
  CCD26148.2 61 ESASREHWLtiACSYVNQGRIDAGIELIKMA 91
                5566667766699999999999999888765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0016
                 TT-HHHHHHHHHHHH...........HHH--HHHHHHH..HHHHHHTT-HHHHHHHHHCTSHHHC-H..HHHHHHHHHHHHTT-HHHHHHHH CS
      ANAPC3   2 qnnyknAiflaerll..........aaetespedayll..AlclylngqykrAyellrkaklnsksl..gcrylfAqcllkLkkyeeAiaaL 79 
                 +++y++A+  +++ +          a+ + sp+  +ll  A+ l++ +++   ++l++++  n+  l    r+ ++ c  +Lk y+ Ai+a 
  CCD26148.2 164 RGHYDKALETCDLFVkglqqdvtnlATTNASPNCMFLLlrAKLLFRKKNFMASLKLFQELLVNNPVLkpDPRIGIGACFWQLKDYKMAINAW 255
                 678999999***9999998888776688888888999889********************44444434588888888888*******99985 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.11
                 T-HHHHHHHHHHHH.HHH--HHH..HHHHHHHHHHTT-HHHHHHHHHCT CS
      ANAPC3   3 nnyknAiflaerllaaetesped..ayllAlclylngqykrAyellrka 49 
                  n+k+A++ ++ ++++e+  ++   + ll   +y  g+yk+ ++++++ 
  CCD26148.2 292 DNFKDAMIDLSNIYQTENGKENPvlLTLLQSYYYYKGDYKKILNIYEER 340
                 588999999999997776666552255578999999*****99999987 PP

  == domain 4  score: 15.7 bits;  conditional E-value: 9.9e-06
                 HHHHHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH- CS
      ANAPC3  23 pedayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLe 80 
                 +e++++ + ++y +++y +A+  ++++ k+n+ +l + + ++q+++k + +ee + ++e
  CCD26148.2 354 SESTLWCGRAYYALNDYRQAFAMFQESlKKNEDNLLSKLGLGQTQIKTNLLEESVLTFE 412
                 6899*******************************************999999877666 PP

  == domain 5  score: 3.5 bits;  conditional E-value: 0.066
                 HHHHHHHHHHH.HHH--HHH......HHHH.HHHHHHTT-HHHHHHHHHCT CS
      ANAPC3   6 knAiflaerllaaetesped......ayll.AlclylngqykrAyellrka 49 
                  +Ai ++e++  ++t+s  +      ay+  ++ + +++qyk+ +e+l ka
  CCD26148.2 465 SKAIKYLEKYI-KSTNSKRNqlviprAYFViSQLYESTNQYKQSLEYLIKA 514
                 57999999999.6666666657777755534999999*****999998777 PP

  == domain 6  score: 9.1 bits;  conditional E-value: 0.0011
                 TT-HHHHHHHHHCTSHHHC-HHHHHHHHHHHHHTT-HHHHHHH CS
      ANAPC3  36 ngqykrAyellrkaklnskslgcrylfAqcllkLkkyeeAiaa 78 
                 +++   A+e+lrk +    ++ +++ +A cll++ ++++Ai  
  CCD26148.2 750 SKRLGPALEILRKVRDSIDNEDVHINLANCLLEMREFNKAIEN 792
                 5566678888888877788888888888888888888888865 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.099   1.3e+02       7      22 ..     159     174 ..     156     176 .. 0.88
   2 ?    4.4   0.0     0.036        45       5      30 ..     238     263 ..     237     269 .. 0.82
   3 ?    4.0   0.0     0.049        63       2      28 ..     317     341 ..     316     349 .. 0.85
   4 ?    5.5   0.1     0.016        20       6      27 ..     361     382 ..     360     389 .. 0.84
   5 ?   -1.8   0.0       3.3   4.2e+03      16      28 ..     465     475 ..     464     483 .. 0.75
   6 !    7.7   0.0    0.0031       3.9       2      29 ..     491     516 ..     490     524 .. 0.82
   7 ?   -3.1   0.1         9   1.2e+04       2       9 ..     534     541 ..     533     544 .. 0.88
   8 !    6.6   0.0    0.0069       8.8       3      23 ..     774     794 ..     772     801 .. 0.89
   9 ?   -0.4   0.0       1.2   1.5e+03       2      29 ..     810     837 ..     809     840 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.099
       TPR_7   7 rlysrlGdyeeAiely 22 
                 +ly ++G+y++A+e +
  CCD26148.2 159 DLYYQRGHYDKALETC 174
                 589999*******976 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.036
       TPR_7   5 LarlysrlGdyeeAielyeqsLaltk 30 
                 ++ ++ +l dy+ Ai   e+sL+l+ 
  CCD26148.2 238 IGACFWQLKDYKMAINAWERSLELDP 263
                 5788999*************777764 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.049
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLal 28 
                 L  L + y   Gdy++ + +ye+  ++
  CCD26148.2 317 LTLLQSYYYYKGDYKKILNIYEE--RI 341
                 56788889999***********9..55 PP

  == domain 4  score: 5.5 bits;  conditional E-value: 0.016
       TPR_7   6 arlysrlGdyeeAielyeqsLa 27 
                 +r+y +l+dy++A   +++sL 
  CCD26148.2 361 GRAYYALNDYRQAFAMFQESLK 382
                 89***************99663 PP

  == domain 5  score: -1.8 bits;  conditional E-value: 3.3
       TPR_7  16 eeAielyeqsLal 28 
                 ++Ai+++e+   +
  CCD26148.2 465 SKAIKYLEK--YI 475
                 59******9..44 PP

  == domain 6  score: 7.7 bits;  conditional E-value: 0.0031
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLalt 29 
                 ++ + +ly++ ++y++ +e++ ++L  +
  CCD26148.2 491 YFVISQLYESTNQYKQSLEYLIKAL--E 516
                 5567799****************55..4 PP

  == domain 7  score: -3.1 bits;  conditional E-value: 9
       TPR_7   2 LlnLarly 9  
                 L+nL++ y
  CCD26148.2 534 LNNLGSFY 541
                 8****997 PP

  == domain 8  score: 6.6 bits;  conditional E-value: 0.0069
       TPR_7   3 lnLarlysrlGdyeeAielye 23 
                  nLa++  +++++ +Aie y 
  CCD26148.2 774 INLANCLLEMREFNKAIENYD 794
                 69****************986 PP

  == domain 9  score: -0.4 bits;  conditional E-value: 1.2
       TPR_7   2 LlnLarlysrlGdyeeAielyeqsLalt 29 
                 L+ La ++ ++G  e+ ie++ ++L+ t
  CCD26148.2 810 LNLLAKTWYSRGLKEKKIEFFFKALVNT 837
                 899*****99999999999999966444 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.17   2.1e+02       1      34 []     139     172 ..     139     172 .. 0.88
   2 !   10.7   0.0   0.00043      0.55       3      25 ..     256     283 ..     254     307 .. 0.85
   3 ?   -2.1   0.1       5.5   7.1e+03      20      32 ..     361     373 ..     361     374 .. 0.90
   4 ?   -2.2   0.0       5.8   7.4e+03       1      22 [.     376     397 ..     376     403 .. 0.77
   5 ?   -1.5   0.0       3.4   4.3e+03      15      33 ..     490     508 ..     487     509 .. 0.85
   6 ?    4.9   0.0      0.03        39      14      28 ..     532     546 ..     531     552 .. 0.87
   7 ?   -1.5   0.0       3.5   4.5e+03       1      12 [.     601     612 ..     601     619 .. 0.87
   8 ?    0.4   0.0      0.85   1.1e+03       8      28 ..     683     703 ..     679     710 .. 0.82
   9 ?    1.5   0.0      0.39     5e+02       1      27 [.     725     751 ..     725     757 .. 0.86
  10 ?    4.1   0.0     0.057        73      12      33 ..     769     790 ..     766     791 .. 0.86
  11 ?    1.7   0.0      0.33   4.3e+02      11      32 ..     805     826 ..     793     828 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.17
      TPR_17   1 lylkaleldPnnadaynnLAelllknGdlmtArq 34 
                 ++++a+ ++P+ +  +     l++++G +++A++
  CCD26148.2 139 CLKEAIGINPTWVCNMLATVDLYYQRGHYDKALE 172
                 57889999999999999999999*******9975 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00043
      TPR_17   3 lkaleldPnn..adaynnLAelll...k 25 
                 +++leldP+n  ++++++L+++++    
  CCD26148.2 256 ERSLELDPTNknSKVLCLLGKFHKtliD 283
                 89********99*********9985553 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 5.5
      TPR_17  20 AelllknGdlmtA 32 
                 +++++ ++d+++A
  CCD26148.2 361 GRAYYALNDYRQA 373
                 7899******998 PP

  == domain 4  score: -2.2 bits;  conditional E-value: 5.8
      TPR_17   1 lylkaleldPnnadaynnLAel 22 
                 +++++l+++ +n  +   L+++
  CCD26148.2 376 MFQESLKKNEDNLLSKLGLGQT 397
                 5899999999997776666666 PP

  == domain 5  score: -1.5 bits;  conditional E-value: 3.4
      TPR_17  15 aynnLAelllknGdlmtAr 33 
                 ay+   +l+++ +++++ +
  CCD26148.2 490 AYFVISQLYESTNQYKQSL 508
                 899999********99865 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.03
      TPR_17  14 daynnLAelllknGd 28 
                 +++nnL+ ++++nGd
  CCD26148.2 532 ELLNNLGSFYYMNGD 546
                 579***********8 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 3.5
      TPR_17   1 lylkaleldPnn 12 
                 ly+  l ++Pn+
  CCD26148.2 601 LYEDILSKHPNY 612
                 79*********8 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.85
      TPR_17   8 ldPnnadaynnLAelllknGd 28 
                 +d  + +a+  L++l++ +G+
  CCD26148.2 683 YDSHDLYALISLGNLYCIIGR 703
                 5666778999*******9885 PP

  == domain 9  score: 1.5 bits;  conditional E-value: 0.39
      TPR_17   1 lylkaleldPnnadaynnLAelllknG 27 
                 l++k+l++dP n+ a +  A ++++ +
  CCD26148.2 725 LFQKVLQIDPMNVFAAQGIAIIFAESK 751
                 79********99999999999888765 PP

  == domain 10  score: 4.1 bits;  conditional E-value: 0.057
      TPR_17  12 nadaynnLAelllknGdlmtAr 33 
                 n d++ nLA++ll+  ++ +A+
  CCD26148.2 769 NEDVHINLANCLLEMREFNKAI 790
                 779**********998888887 PP

  == domain 11  score: 1.7 bits;  conditional E-value: 0.33
      TPR_17  11 nnadaynnLAelllknGdlmtA 32 
                 n +  +n+LA++++++G ++++
  CCD26148.2 805 NKSHILNLLAKTWYSRGLKEKK 826
                 458899********99966665 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       0.3   3.8e+02      10      26 ..     133     149 ..     133     149 .. 0.90
   2 !    6.4   0.1    0.0054       6.9       2      15 ..     159     172 ..     159     173 .. 0.92
   3 !   10.3   0.0   0.00034      0.43       6      27 ..     244     265 ..     241     276 .. 0.91
   4 ?   -3.8   0.5       8.7   1.1e+04       4      12 ..     324     332 ..     324     337 .. 0.87
   5 !   10.7   0.4   0.00025      0.33       1      38 [.     361     398 ..     361     402 .. 0.90
   6 ?   -1.5   0.4       1.6   2.1e+03       6      21 ..     500     515 ..     490     516 .. 0.66
   7 ?   -0.2   0.1      0.63   8.1e+02      29      42 .]     532     545 ..     531     545 .. 0.90
   8 ?    5.0   0.0     0.015        20      10      28 ..     719     737 ..     714     739 .. 0.88
   9 ?   -2.7   0.0       3.9     5e+03      26      38 ..     768     780 ..     768     783 .. 0.83
  10 ?   -0.8   0.1         1   1.3e+03       9      17 ..     785     793 ..     777     794 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.3
      TPR_11  10 yeeAieaYkkAlkldPd 26 
                 ++eA +++k+A+ ++P+
  CCD26148.2 133 LNEAENCLKEAIGINPT 149
                 68999**********95 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0054
      TPR_11   2 dayyeqGkyeeAie 15 
                 d+yy++G y++A+e
  CCD26148.2 159 DLYYQRGHYDKALE 172
                 78**********98 PP

  == domain 3  score: 10.3 bits;  conditional E-value: 0.00034
      TPR_11   6 eqGkyeeAieaYkkAlkldPdn 27 
                 ++ +y+ Ai+a+++ l+ldP+n
  CCD26148.2 244 QLKDYKMAINAWERSLELDPTN 265
                 6789****************98 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 8.7
      TPR_11   4 yyeqGkyee 12 
                 yy +G+y++
  CCD26148.2 324 YYYKGDYKK 332
                 9999*9975 PP

  == domain 5  score: 10.7 bits;  conditional E-value: 0.00025
      TPR_11   1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlay 38 
                 G+ayy++++y +A + +++ lk ++dn    ++LG+++
  CCD26148.2 361 GRAYYALNDYRQAFAMFQESLKKNEDNLLSKLGLGQTQ 398
                 99*************************88888888765 PP

  == domain 6  score: -1.5 bits;  conditional E-value: 1.6
      TPR_11   6 eqGkyeeAieaYkkAl 21 
                 + ++y++++e + kAl
  CCD26148.2 500 STNQYKQSLEYLIKAL 515
                 4567777777666666 PP

  == domain 7  score: -0.2 bits;  conditional E-value: 0.63
      TPR_11  29 eayynLGlayykqG 42 
                 e+++nLG  yy++G
  CCD26148.2 532 ELLNNLGSFYYMNG 545
                 6789*******998 PP

  == domain 8  score: 5.0 bits;  conditional E-value: 0.015
      TPR_11  10 yeeAieaYkkAlkldPdna 28 
                 y ++i+ ++k l++dP n+
  CCD26148.2 719 YLKSIQLFQKVLQIDPMNV 737
                 5579************996 PP

  == domain 9  score: -2.7 bits;  conditional E-value: 3.9
      TPR_11  26 dnaeayynLGlay 38 
                 dn +++ nL++ +
  CCD26148.2 768 DNEDVHINLANCL 780
                 899******9865 PP

  == domain 10  score: -0.8 bits;  conditional E-value: 1
      TPR_11   9 kyeeAieaY 17 
                 ++++Aie+Y
  CCD26148.2 785 EFNKAIENY 793
                 789*****9 PP

>> TPR_10  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.7   3.4e+03       8      30 ..      71      93 ..      70      94 .. 0.79
   2 ?   -0.4   0.0      0.92   1.2e+03      18      30 ..     133     145 ..     131     147 .. 0.86
   3 ?    1.2   0.2      0.29   3.7e+02      11      23 ..     160     172 ..     159     172 .. 0.90
   4 ?   -0.6   0.0         1   1.3e+03      23      40 ..     246     263 ..     244     265 .. 0.79
   5 ?   -0.3   0.1      0.86   1.1e+03      11      27 ..     323     339 ..     322     339 .. 0.90
   6 ?    9.5   0.2   0.00072      0.92       9      30 ..     361     382 ..     361     386 .. 0.92
   7 ?   -3.2   0.0       7.1   9.1e+03      16      36 ..     395     415 ..     394     418 .. 0.74
   8 ?    1.5   0.1      0.23   2.9e+02      11      30 ..     497     516 ..     494     517 .. 0.88
   9 ?    2.3   0.0      0.13   1.6e+02       5      17 ..     534     546 ..     531     557 .. 0.82
  10 ?   -2.6   0.1       4.4   5.6e+03       7      23 ..     775     791 ..     774     794 .. 0.87
  11 ?   -2.7   0.0       4.8   6.2e+03      17      35 ..     885     903 ..     881     906 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.7
      TPR_10  8 LanalrqrgrydeAealleeala 30
                +a+ + ++gr d+  +l + al+
  CCD26148.2 71 IACSYVNQGRIDAGIELIKMALQ 93
                6899******9988777766665 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.92
      TPR_10  18 ydeAealleeala 30 
                 ++eAe+ l+ea+ 
  CCD26148.2 133 LNEAENCLKEAIG 145
                 58*********96 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.29
      TPR_10  11 alrqrgrydeAea 23 
                 +++qrg yd+A++
  CCD26148.2 160 LYYQRGHYDKALE 172
                 59*********85 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1
      TPR_10  23 alleealairrrllGpdH 40 
                 ++++ a+++++r l+ d+
  CCD26148.2 246 KDYKMAINAWERSLELDP 263
                 678889999999998665 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.86
      TPR_10  11 alrqrgrydeAeallee 27 
                 +++  g+y++ ++++ee
  CCD26148.2 323 YYYYKGDYKKILNIYEE 339
                 699999****9999997 PP

  == domain 6  score: 9.5 bits;  conditional E-value: 0.00072
      TPR_10   9 analrqrgrydeAealleeala 30 
                 ++a++++++y +A a+++e+l 
  CCD26148.2 361 GRAYYALNDYRQAFAMFQESLK 382
                 89******************97 PP

  == domain 7  score: -3.2 bits;  conditional E-value: 7.1
      TPR_10  16 grydeAealleealairrrll 36 
                 g+ +   +llee++ + + ++
  CCD26148.2 395 GQTQIKTNLLEESVLTFENIY 415
                 777888899***997766655 PP

  == domain 8  score: 1.5 bits;  conditional E-value: 0.23
      TPR_10  11 alrqrgrydeAealleeala 30 
                 ++ ++++y++++++l++al+
  CCD26148.2 497 LYESTNQYKQSLEYLIKALE 516
                 68889*************97 PP

  == domain 9  score: 2.3 bits;  conditional E-value: 0.13
      TPR_10   5 lnNLanalrqrgr 17 
                 lnNL+  ++  g+
  CCD26148.2 534 LNNLGSFYYMNGD 546
                 9********9987 PP

  == domain 10  score: -2.6 bits;  conditional E-value: 4.4
      TPR_10   7 NLanalrqrgrydeAea 23 
                 NLan l +++++++A +
  CCD26148.2 775 NLANCLLEMREFNKAIE 791
                 9***9*******99976 PP

  == domain 11  score: -2.7 bits;  conditional E-value: 4.8
      TPR_10  17 rydeAealleealairrrl 35 
                 +++++++ l++a++i ++l
  CCD26148.2 885 DLQKSVKGLDDAINILKEL 903
                 6777788888999998887 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1      0.14   1.8e+02      11      28 ..     161     178 ..     161     180 .. 0.88
   2 ?    6.9   0.0    0.0053       6.8      14      39 ..     245     270 ..     242     272 .. 0.91
   3 ?    0.1   0.2      0.69   8.8e+02      10      34 ..     363     387 ..     360     389 .. 0.89
   4 ?   -1.6   0.0       2.3   2.9e+03      18      32 ..     596     610 ..     584     616 .. 0.57
   5 ?   -0.9   0.0       1.4   1.8e+03      17      34 ..     719     736 ..     717     741 .. 0.87
   6 ?   -1.8   0.0       2.6   3.3e+03      13      33 ..     782     802 ..     775     805 .. 0.83

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.14
                 HHHHT-HHHHHHHHHHHH CS
  Fis1_TPR_C  11 hyklgeYseArryvdalL 28 
                 +y  g Y++A++ +d + 
  CCD26148.2 161 YYQRGHYDKALETCDLFV 178
                 688899*********986 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0053
                 HT-HHHHHHHHHHHHHHTTS-HHHHH CS
  Fis1_TPR_C  14 lgeYseArryvdalLeiEPenrQaqs 39 
                 l++Y++A +  ++ Le++P n++ + 
  CCD26148.2 245 LKDYKMAINAWERSLELDPTNKNSKV 270
                 89*******************98765 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.69
                 HHHHHT-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  10 GhyklgeYseArryvdalLeiEPen 34 
                 ++y l +Y++A    +  L++  +n
  CCD26148.2 363 AYYALNDYRQAFAMFQESLKKNEDN 387
                 89*********99999999998888 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2.3
                 HHHHHHHHHHHHHTT CS
  Fis1_TPR_C  18 seArryvdalLeiEP 32 
                 ++A ++ + +L+++P
  CCD26148.2 596 TKAQELYEDILSKHP 610
                 345555555555555 PP

  == domain 5  score: -0.9 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C  17 YseArryvdalLeiEPen 34 
                 Y ++ ++ + +L+i+P n
  CCD26148.2 719 YLKSIQLFQKVLQIDPMN 736
                 88999999********98 PP

  == domain 6  score: -1.8 bits;  conditional E-value: 2.6
                 HHT-HHHHHHHHHHHHHHTTS CS
  Fis1_TPR_C  13 klgeYseArryvdalLeiEPe 33 
                  ++e+++A +  d +L++ P+
  CCD26148.2 782 EMREFNKAIENYDLILKKFPK 802
                 589***********9998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1121 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2432  (0.135646); expected 358.6 (0.02)
Passed bias filter:                      392  (0.021864); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.08u 0.32s 00:00:01.40 Elapsed: 00:00:00.52
# Mc/sec: 6546.81
//
Query:       CCD26149.2  [L=528]
Description: hypothetical protein NDAI_0G03720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1907  (0.106364); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 3621.69
//
Query:       CCD26150.2  [L=169]
Description: hypothetical protein NDAI_0G03730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-53  179.6   0.1    3.2e-53  179.3   0.1    1.0  1  DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase


Domain annotation for each model (and alignments):
>> DMRL_synthase  6,7-dimethyl-8-ribityllumazine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.3   0.1   1.8e-57   3.2e-53       2     138 ..      18     162 ..      17     164 .. 0.95

  Alignments for each domain:
  == domain 1  score: 179.3 bits;  conditional E-value: 1.8e-57
                    EEEEEEEESTTHHHHHHHHHHHHHHHHHCTTSSCCEEEEEESSCCCHHHHHHHHCT..STT.-..SEEEEEEEEE--SSCHHHHHHHHHHHHHHHH CS
  DMRL_synthase   2 lriaiVvarfneeitdkllegaldelkeagvaeenidvvtVPGafElplaakklae..ssk.y.ldavialGvvirGetphfeyvaeavskglmrv 93 
                    lri+i++ar+n+ ++d+l++ga++++ ++gv+e+ni v tVPG+fElp+ ak+la+  +++   ldavi +Gv+i+G+t+hfey+++++++++m +
     CCD26150.2  18 LRIGIIHARWNNVVIDALVKGAIERMLSLGVQESNIIVETVPGSFELPYGAKRLAQreEKNgTpLDAVIPIGVLIKGSTMHFEYISDSTTQAIMAL 113
                    8*******************************************************763334789******************************* PP

                    HHHCTS-EEEEEEEESSHHCCHHCCTSTC....CCHHHHHHHHHHHHHH CS
  DMRL_synthase  94 sldtgvPvifgvltvdteeqaleraggka....gnkGeeaaeaaleman 138
                    + + ++Pvifg+lt+ teeqal+rag ++    +n+Ge++++aa+ema+
     CCD26150.2 114 QDKIDIPVIFGLLTCLTEEQALARAGIDEgktmHNHGEDWGAAAVEMAT 162
                    *************************96667899**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       298  (0.0166211); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1303.21
//
Query:       CCD26151.2  [L=433]
Description: hypothetical protein NDAI_0G03740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-85  285.2   0.0    1.2e-84  284.4   0.0    1.4  2  Hist_deacetyl  Histone deacetylase domain


Domain annotation for each model (and alignments):
>> Hist_deacetyl  Histone deacetylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.4   0.0   6.8e-89   1.2e-84       1     302 [.      38     324 ..      38     329 .. 0.94
   2 ?   -3.1   0.0      0.23   4.2e+03      35      52 ..     356     378 ..     353     418 .. 0.61

  Alignments for each domain:
  == domain 1  score: 284.4 bits;  conditional E-value: 6.8e-89
                    SCCGTHHHHHHHHHHHHT.THHHHCCE.EE-----HHHHTTTS-HHHHHHHHCHHHHCHHT.TTHCCHHHCCTSTSSSSSTHCTTTCCHHHHHHHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl   1 hpenpkRlsaileslaesvglldelelliqpseatkeellkvHskeYlelleslsnelkkkeeakekeleeiasklldddtpvspktlkaallavg 96 
                    hp++p+R++ +++sl+ ++gl +++e + ++++atk+e+ ++H++eY+++l++++ +   + e+ +ke+ + +   + dd+pv+++++++++++ g
     CCD26151.2  38 HPMKPHRIR-MTHSLIMNYGLYKKME-IYRAKPATKQEMCQFHTDEYIDFLSRVTPD---NLELFKKESVKFN---VGDDCPVFDGLYEYCSISGG 125
                    89*******.***********99888.5************************98755...4445566555555...6899**************** PP

                    HHHHHHHHHHTTSSSEEEETT.SS--TT-BTTB-BTTBSS-HHHHHHHHHHHCC-SS-EEEEE-SSS--HHHHHHCTT-TTEEEEEEEE-CCTSTT CS
                    xxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl  97 avleavdavlsgsvkaafvlv.rPpgHHakaseasGFClvNnvaiaikylqakhelkrvailDvDvHhGnGteeafysdpdvltlSiHryegifyP 191
                    +++e++ ++ +g  k++++++  ++ HHak+seasGFC++N+++++i +l +   ++rv+++D+DvHhG+G+eeafys+++v+t+S+H+y++ f+P
     CCD26151.2 126 GSMEGAARLNRG--KCDVAINyAGGLHHAKKSEASGFCYLNDIVLGIIELLR--YHPRVLYIDIDVHHGDGVEEAFYSTDRVMTCSFHKYGE-FFP 216
                    **********99..9******9****************************99..347********************************966.*** PP

                    SS--TT---SGGGTTSEEEEEE-TT-BHHHHHHHHHHCHHHHHCCH--SEEEEEE-STTBTTSTT-S-BB-HHHHHHHHHHHCCCHGS-G.EEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hist_deacetyl 192 gtgaledlgegkgkgfnlnvpleegtgdeeylkvfeeilrpvleefkPdlilvsaGfDalkgdplgelnlsvegykeltkklaeladkvkkvvlll 287
                    gtg+l d+g gkgk +++nvpl++g++d++y +vfe ++++++e ++P+++++++G D+l+gd+lg +nls++g+++++++++++     ++++++
     CCD26151.2 217 GTGELRDVGVGKGKYYAVNVPLRDGIDDATYRNVFEPVVKRIMEWYQPSAVVLQCGGDSLSGDRLGCFNLSMQGHANCVNYVKSFGI---PMMVVG 309
                    **************************************************************************************8...99**** PP

                    -S---HHHHHHHHHH CS
                    xxxxxxxxxxxxxxx RF
  Hist_deacetyl 288 eGGYnlealaravta 302
                    +GGY+++++ar +  
     CCD26151.2 310 GGGYTMRNVARTWCF 324
                    ***********9975 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.23
                    -HHHHTTTS-HHHHHHH.....H CS
                    xxxxxxxxxxxxxxxxx.....x RF
  Hist_deacetyl  35 tkeellkvHskeYlell.....e 52 
                    +++ + +v s+eYl+++     +
     CCD26151.2 356 RPSNMFNVNSPEYLDKImtsifV 378
                    56778889999999998433330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       340  (0.0189637); expected 358.6 (0.02)
Passed bias filter:                      285  (0.015896); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 3460.57
//
Query:       CCD26152.2  [L=253]
Description: hypothetical protein NDAI_0G03750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-09   37.8   0.0    3.7e-09   36.8   0.0    1.6  1  KH_6      KH domain
    8.6e-08   32.0   0.0    1.7e-07   31.0   0.0    1.5  1  Rrp40_N   Exosome complex exonuclease Rrp40 N-terminal domain
  ------ inclusion threshold ------
      0.025   15.3   0.0      0.047   14.4   0.0    1.4  1  E1_UFD    Ubiquitin fold domain


Domain annotation for each model (and alignments):
>> KH_6  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   6.1e-13   3.7e-09       2      44 ..     160     207 ..     159     209 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 6.1e-13
        KH_6   2 mlfe.VslslvrRll....nhvLeeLgkagpfeiavGlNGriWvkses 44 
                 m+++   l +vr ll     ++L  L+ + +feia+G+NG+iW+k+++
  CCD26152.2 160 MIIDsTGLKFVRLLLfddqFPLLRLLASRTKFEIAIGVNGKIWIKADE 207
                 555545577888888******************************976 PP

>> Rrp40_N  Exosome complex exonuclease Rrp40 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.9e-11   1.7e-07       5      48 .]      28      75 ..      24      75 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.0 bits;  conditional E-value: 2.9e-11
     Rrp40_N  5 ssklkLGPGLrhtPplstliatraGiLh..tkpkkqal..wiEsnskR 48
                s++l+LGPGL+++P++ t+ +++aG L   ++++++++  +i+++s+R
  CCD26152.2 28 SHRLVLGPGLYTDPKTLTIHPVNAGKLYitQNNNSNRIniHIDYESHR 75
                566************999**********88666667665588888877 PP

>> E1_UFD  Ubiquitin fold domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   7.8e-06     0.047       9      61 ..      82     134 ..      66     152 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 7.8e-06
      E1_UFD   9 eitlkelldyfkekkklevsmislgvsllYasflpkkkdkerlklklselve.e 61 
                 ++ +  ++  f +++k+++++ s  vsl Y++f + +++k+r +lk+ +lv  +
  CCD26152.2  82 DLVIGCIVGTFADSYKVSLNSFSNSVSLSYMAFPN-ASKKNRPTLKIGDLVYcK 134
                 556666788999*********************66.999**********99833 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1969.72
//
Query:       CCD26153.2  [L=706]
Description: hypothetical protein NDAI_0G03760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-25   90.7   0.0    1.6e-25   90.1   0.0    1.2  1  LCM       Leucine carboxyl methyltransferase
    0.00021   21.2   1.7     0.0014   18.6   0.0    3.0  4  Kelch_5   Kelch motif
     0.0014   18.6   1.1          4    7.5   0.0    4.5  5  Kelch_4   Galactose oxidase, central domain
  ------ inclusion threshold ------
      0.079   12.6   0.1        1.6    8.4   0.0    2.8  2  Kelch_1   Kelch motif
       0.18   12.2   0.1        0.8   10.1   0.0    2.2  2  Kelch_3   Galactose oxidase, central domain


Domain annotation for each model (and alignments):
>> LCM  Leucine carboxyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   4.5e-29   1.6e-25      13     185 ..      27     239 ..      20     242 .. 0.91

  Alignments for each domain:
  == domain 1  score: 90.1 bits;  conditional E-value: 4.5e-29
                 HHH.HHTSSHTCCCCCCCHHHHHHHH......CHCCCHCHHCHG.CHCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTT.ESEEEEET-TT--HHHH CS
         LCM  13 rra.adglidDplaeslvsaaglell......erkadkelekek.eeekkekkapelnrgiavRtrffddllkaal.saag.irqvViLGAGlDtrayR 101
                 +++ ad +i++++++s++s++++ell      ++ ++++ e++k +++k++k++p++nrg+++R ++++++lk++l s++g    v++LG+G+D++++ 
  CCD26153.2  27 KSKyADLAIQGTNNSSIASKRSVELLylpklnKDDKTTKSEYFKwFVPKNIKRSPCINRGYWLRLHAIRSRLKSILeSNNGkKLLVINLGCGFDPLPFE 125
                 334679*******************9***99888888888999988******************************999994335778*********** PP

                 HHHTT.........TEEEEEEE-HHHHHHHHHHHHHSHHHHH.................EECSEEE--TTSHHHHHHHHHH....TT-TTSEEEEEEES CS
         LCM 102 lpwla.........glkvfEvDqpevlefKretlkelgaepk.................aelryvpvDlrdddwpeaLaaa....gfdpekptawvaeG 170
                 l + +          +++++vD++++l  K++++++++++++                 ++ r+ p+Dl+d++ +e L +       d+++ ++++ae+
  CCD26153.2 126 LLDRSnksaecfqdTISFIDVDYSDLLVNKIKIIENSQELSQiitreqsshisedtlitKNYRTAPCDLNDSQAFEILSQDeslnLNDTNVIKIFIAEV 224
                 *99999999****99****************************************999889999**************998777555699********* PP

                 SGGGS-HHHHHHHHH CS
         LCM 171 vlvYLtpeasdalle 185
                  l+Y++p ++d +++
  CCD26153.2 225 SLAYMKPSNADGIIS 239
                 *********998875 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.8e-07    0.0014       5      26 ..     494     517 ..     492     530 .. 0.79
   2 ?   -2.3   0.0       1.3   4.7e+03      27      38 ..     576     587 ..     570     587 .. 0.77
   3 ?   -0.9   0.0      0.49   1.7e+03       4      33 ..     607     635 ..     606     635 .. 0.78
   4 ?   -3.1   0.0       2.3   8.4e+03      15      31 ..     677     695 ..     671     696 .. 0.67

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.8e-07
     Kelch_5   5 Raghcav.tvsekiYvyGGkvg.r 26 
                 R++hcav + +++i+v+GGkv+ +
  CCD26153.2 494 RHRHCAVnVSENEILVFGGKVHsT 517
                 9******455599********742 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.3
     Kelch_5  27 dgsvsddvyvLd 38 
                 d+s+sd++y ++
  CCD26153.2 576 DDSFSDKLYKFS 587
                 79999***9875 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.49
     Kelch_5   4 pRaghcavtv.sekiYvyGGkvgrdgsvsdd 33 
                 +R+g+  v+  +++i + GG +   ++v++d
  CCD26153.2 607 QRYGSKCVFInDHQIMIVGGTSP--EIVFND 635
                 68888888762699*99999885..888887 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 2.3
     Kelch_5  15 ekiYvyGGkvg..rdgsvs 31 
                 +k++++ G  +    gsvs
  CCD26153.2 677 TKVLIFAGGATcyGFGSVS 695
                 6888888877655555555 PP

>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.2   7.1e+02      14      31 ..     402     417 ..     388     420 .. 0.74
   2 ?   -1.8   0.0      0.94   3.4e+03      15      22 ..     457     464 ..     449     477 .. 0.65
   3 !    7.5   0.0    0.0011         4       4      44 ..     496     539 ..     494     551 .. 0.75
   4 ?   -0.6   0.0      0.38   1.4e+03       6      34 ..     556     586 ..     553     588 .. 0.75
   5 !    4.5   0.0    0.0098        35       7      30 ..     613     635 ..     608     635 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.2
     Kelch_4  14 tiylfGGrgedgtllndl 31 
                  i  +GG+++  t+ln++
  CCD26153.2 402 QITYHGGCNP--TRLNET 417
                 55559*****..899987 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.94
     Kelch_4  15 iylfGGrg 22 
                  +++GGr 
  CCD26153.2 457 GIIIGGRE 464
                 35677775 PP

  == domain 3  score: 7.5 bits;  conditional E-value: 0.0011
     Kelch_4   4 ghsatsipdgtiylfGGrgedg..tllndlyl.ldlstntWrrl 44 
                  h+a+ +  ++i +fGG    +  +  +d++l +d+s  + +++
  CCD26153.2 496 RHCAVNVSENEILVFGGKVHSTpdAYRKDAFLsYDISKDEYTEV 539
                 699****9*********876656577777777777777766655 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.38
     Kelch_4   6 satsi.pdgtiylfGGrgedg.tllndlyll 34 
                 s+ ++  ++  ++ GG+  ++ ++++ ly++
  CCD26153.2 556 SMSYDkERNIGVILGGQLFKDdSFSDKLYKF 586
                 6667755589999999988876888888887 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.0098
     Kelch_4   7 atsipdgtiylfGGrgedgtllnd 30 
                 ++ i+d  i ++GG +++  ++nd
  CCD26153.2 613 CVFINDHQIMIVGGTSPE-IVFND 635
                 89999***********99.99998 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00044       1.6       3      43 ..     496     540 ..     494     541 .. 0.75
   2 ?    0.8   0.0      0.11   3.8e+02      11      22 ..     618     629 ..     608     638 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00044
                 BSEEEEEETTEEEEEEEBCS....SSBEEEEEEEETTTTEEEEEC CS
     Kelch_1   3 agagavvvggkiYviGGsdg....gnalssvevyDpetntWrelp 43 
                 +++++ v  ++i v+GG  +      + + +  yD  +++ +e+p
  CCD26153.2 496 RHCAVNVSENEILVFGGKVHstpdAYRKDAFLSYDISKDEYTEVP 540
                 69***************8886666666666666666666666665 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.11
                 TTEEEEEEEBCS CS
     Kelch_1  11 ggkiYviGGsdg 22 
                 +++i ++GG + 
  CCD26153.2 618 DHQIMIVGGTSP 629
                 899******986 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   4.1e+03      30      45 ..     435     453 ..     406     455 .. 0.41
   2 ?   10.1   0.0   0.00022       0.8       2      39 ..     505     550 ..     504     560 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.2
     Kelch_3  30 tWaeiaslpp...aRagha 45 
                 ++++i +  p    R++h+
  CCD26153.2 435 QIQTIKNDDPnfkKRMNHT 453
                 4444544433345566666 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00022
     Kelch_3   2 drlyifGGlgddgqdrl..ndvyvydldtntWaei......aslpp 39 
                 +++++fGG+  ++ d++   ++++yd+++++++e+       ++pp
  CCD26153.2 505 NEILVFGGKVHSTPDAYrkDAFLSYDISKDEYTEVpyytaiHTTPP 550
                 89********6666666*99999*******9998855554444455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       384  (0.0214178); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.39
# Mc/sec: 5493.78
//
Query:       CCD26154.2  [L=414]
Description: hypothetical protein NDAI_0G03770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-82  275.2   0.4    8.7e-82  274.8   0.4    1.2  1  CDC50     LEM3 (ligand-effect modulator 3) family / CDC50 fam
     0.0021   17.6   0.4       0.21   11.2   0.0    2.4  2  DUF3098   Protein of unknown function (DUF3098)
  ------ inclusion threshold ------
       0.69   10.2   3.0         15    5.9   0.1    2.3  2  DUF3040   Protein of unknown function (DUF3040)
        5.5    7.1   6.1         13    5.9   0.5    2.3  2  DUF3185   Protein of unknown function (DUF3185)


Domain annotation for each model (and alignments):
>> CDC50  LEM3 (ligand-effect modulator 3) family / CDC50 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.8   0.4   1.9e-85   8.7e-82       2     279 ..      94     401 ..      93     402 .. 0.92

  Alignments for each domain:
  == domain 1  score: 274.8 bits;  conditional E-value: 1.9e-85
       CDC50   2 lvasksvkeleidYtsecataaesek................................easkekktCtvqftvpedlkapvyvyYeLtnfyQnhrryvk 68 
                 l+ +++v+e+++ Y+ +c taa++++                                ++++e+ tC+++ft+p+++k++vy+ Y L++f  nhrryv 
  CCD26154.2  94 LALASRVDEMTLYYQ-DCMTAAPTDDfadmptshykyyfhnlpnfdtspqwrfiddpnDDFQERGTCQIRFTIPRTIKKTVYINYMLEKFAANHRRYVL 191
                 566789*********.*****99999*******************************999999************************************ PP

       CDC50  69 Srddsqlkgkaks.s.lksssss.dCepletakekkekkkiiyPCGliAnslFNDtfslvee.ssskltkvnltkkgIawksdkekkfknktkyealee 163
                 S++++ql+g ++s + +++ s+  +C+pl+++++     k++yPCGliAn +FNDtf ++    ++++++ +lt++gI wk+d+ ++fk+ tky+  +e
  CCD26154.2 192 SFSEDQLRGAKASyDvIHD-STGiNCKPLARSSN----GKLYYPCGLIANAMFNDTFPMELInVTDTSNNYPLTNQGINWKTDR-QRFKK-TKYNY-TE 282
                 ***********99898887.44448****76443....379****************776664555578888************.9***6.87865.9* PP

       CDC50 164 vvkPpnWakk.pe...eteipelkenedfivWmrtAalptFrKlyrrindeedLkagtyevdiennfpvksFkGtKsivlsttswlGgknpflgiaYlv 258
                 +++Pp W+k+ p+   et+ip+++e+e+f++Wmr+ a+ + +Kl+rr n +++L+ag+ye+di  ++pv++F+G+K++++++ s +Gg+n+flgi+Yl+
  CCD26154.2 283 ITPPPFWEKSfPDgynETNIPNIQEWEEFQNWMRPGAFDKSTKLIRR-NGNDSLPAGEYEIDIGLHWPVTEFNGKKAVYITHGSSIGGRNSFLGIVYLI 380
                 *******888944566*******************************.999************************************************ PP

       CDC50 259 vGgiclvlaivflvthlikpr 279
                  G+ic+++aiv++  ++++ r
  CCD26154.2 381 GGCICCAMAIVLAGCWVMSGR 401
                 ************999888766 PP

>> DUF3098  Protein of unknown function (DUF3098)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.2    0.0083        37       8      35 ..      79     106 ..      76     113 .. 0.71
   2 !   11.2   0.0   4.6e-05      0.21      10      34 ..     384     408 ..     381     414 .] 0.87

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0083
     DUF3098   8 illliglaviilGfiLmsGggsddpnvF 35 
                 +l+++g+ vi+ G++L   +  d+ + +
  CCD26154.2  79 YLIIAGVFVIVGGCLLALASRVDEMTLY 106
                 4677788888888888777777766655 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 4.6e-05
     DUF3098  10 lliglaviilGfiLmsGggsddpnv 34 
                 + +++a++++G+++msG +  dpn+
  CCD26154.2 384 ICCAMAIVLAGCWVMSGRKIADPNS 408
                 6789*****************9985 PP

>> DUF3040  Protein of unknown function (DUF3040)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0034        15      42      66 ..      71      95 ..      54     105 .. 0.76
   2 ?    4.1   0.7     0.013        57      53      79 ..     373     399 ..     361     402 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0034
     DUF3040 42 rrlavlavllfvaGllllvlGvaaa 66
                   +v+++ l++aG+ ++v+G ++a
  CCD26154.2 71 TPKTVIPIYLIIAGVFVIVGGCLLA 95
                445899999************6555 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.013
     DUF3040  53 vaGllllvlG.vaaaavvlgvvGfvvml 79 
                 ++G++ l++G +  a ++++++G  vm 
  CCD26154.2 373 FLGIVYLIGGcICCA-MAIVLAGCWVMS 399
                 579*******77766.69999**99996 PP

>> DUF3185  Protein of unknown function (DUF3185)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.7     0.015        67       3      19 ..      76      92 ..      74     104 .. 0.79
   2 ?    5.9   0.5    0.0028        13      35      58 ..     369     392 ..     360     392 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.015
     DUF3185  3 iGiiLlvaGivLlvfGy 19
                i i L++aG++ +v G 
  CCD26154.2 76 IPIYLIIAGVFVIVGGC 92
                66889999999999885 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0028
     DUF3185  35 GsttdktlllligGgvaaivGlvl 58 
                 G+++  ++++ligG ++  + +vl
  CCD26154.2 369 GRNSFLGIVYLIGGCICCAMAIVL 392
                 77777789*********9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       756  (0.0421663); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3016.21
//
Query:       CCD26155.2  [L=427]
Description: hypothetical protein NDAI_0G03780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.4e-129  432.4   0.1   1.7e-129  432.0   0.1    1.0  1  Aminotran_3  Aminotransferase class-III
      0.003   17.8   0.0        1.1    9.6   0.0    3.1  4  PucR         Purine catabolism regulatory protein-like family
  ------ inclusion threshold ------
       0.16   11.9   0.0       0.34   10.8   0.0    1.5  1  PIG-H        GPI-GlcNAc transferase complex, PIG-H component


Domain annotation for each model (and alignments):
>> Aminotran_3  Aminotransferase class-III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.0   0.1  2.9e-133  1.7e-129      11     406 .]      38     422 ..      29     422 .. 0.96

  Alignments for each domain:
  == domain 1  score: 432.0 bits;  conditional E-value: 2.9e-133
                  EEEEEEEBTEEE.ETTS-EEEESSHHHHTTTT-BT-HHHHHHHHHHHTT-S---TTTCEEHHHHHHHHHH...HHHCT-..S..EEEEESSHHHHHHH CS
  Aminotran_3  11 lvitkaeGvylt.dvdgkrylDlvssiavvnlGhahPkvvkavkeqaaklshvsfgaltnepalklaekl...lklapkgld..kvflansGseAvet 102
                  l++t++ ++ l+ d ++k+y+D++++iav++lGh++P+v+k+++eq +kl h s +++ ++++l+l+ k+   +k++++++d  +vfl+nsG+eA+e+
   CCD26155.2  38 LCVTRGLNAKLYdDINNKEYIDFTAGIAVTALGHSNPQVSKILAEQSKKLIHSS-NLYYTAESLELSAKIiekTKQFGGQHDasRVFLCNSGTEANEA 134
                  89*********9889***************************************.8888888888888887999999**99999************** PP

                  HHHHHHHHHHHTSHCTT-EEEEETTT---SSHHHHHHSS--TTTTTTCTTB-TSEEEE-TTBGGGTB-HHHHHHHHHHHHHHHHCHTCCCEEEEEE-S CS
  Aminotran_3 103 AlKlarkyarekkatektkiiafkgafHGrtlgalsvtgskkkyktlfgpflpevvrlkypdeevlkeneeeeaalleelealekkkkdevaAvivEp 200
                  AlK+a+k+ ++  +++k+ ++af+++fHGrt+galsvt++ +ky+t fg+++p+v++l+++de ++             l++ +++kkde+a++ivEp
   CCD26155.2 135 ALKFAKKHGITI-NPKKQGLVAFQNSFHGRTMGALSVTWN-AKYRTPFGDLIPHVSFLNLNDELTV-------------LQNFIREKKDELAGLIVEP 217
                  *******88777.9**************************.*********************8886.............999**************** PP

                  CETTTTSEB--CCHHHHHHHHHHHHT-EEEEE-TTTTTTTTSSSSGGGGC..TS--SEEEE-GGGGTTSS-EEEEEEHHHHTTS-TTSB--TTTT-HH CS
  Aminotran_3 201 iqgegGvvvaspeflaklrelckkhdvllivDEvqtGfGrTGklfAleha..gvspDlmtlaKaltgGlplsavlataevmqalapgshgsTfgGnpl 296
                  +qgegG++++++e l +l+++c+++dv++i DE+q+G+GrTGkl+A++h+  + +pD++t aKal++G+p++a++++++v++ l++g+hg+T+gGnpl
   CCD26155.2 218 VQGEGGIFPVPEEKLIGLKQICQENDVMVIYDEIQCGLGRTGKLWAHAHLpkEAHPDIFTAAKALGNGFPIAATIVNEKVNNSLKVGDHGTTYGGNPL 315
                  **************************************************99********************************************** PP

                  HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT-.TTEEEEEEETTEEEEEEBCCCETTCHHHHHHHHHCTEE-EEETTTEEEE---TT--HH CS
  Aminotran_3 297 acavalavleiieeekllenaqelgaalkegLeelqkky.evikevRgkGlmiaielkeeaevkekeilkkakekGvlilsaGdnvirllppliitde 393
                   cav+ +v++++++e++l+++q++ + ++++L+++q +  ++ik+vRgkGlmi++e++e+      e++kka+e G+l+++aG++++r++p+l+i+de
   CCD26155.2 316 GCAVSKYVMDTLAKEDFLQQVQRKADLFTKRLTQIQRRFpHHIKDVRGKGLMIGAEFVEPPA----ELVKKARELGLLVITAGKSTVRFVPALTIEDE 409
                  *************************************999**********************....8******************************* PP

                  HHHHHHHHHHHHH CS
  Aminotran_3 394 eidelleilkkal 406
                   i+e+l+i++ka+
   CCD26155.2 410 VIEEGLNIFEKAV 422
                  **********986 PP

>> PucR  Purine catabolism regulatory protein-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0096        57      34      85 ..      28      79 ..      10      93 .. 0.82
   2 ?   -3.5   0.0         2   1.2e+04      80      97 ..     129     146 ..     123     146 .. 0.77
   3 ?   -1.1   0.0      0.38   2.3e+03      48      79 ..     188     218 ..     186     247 .. 0.70
   4 !    9.6   0.0   0.00018       1.1      59     107 ..     351     401 ..     342     408 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0096
        PucR 34 diaellrggeLllttglal.kddpealaelvrelaeagvaaLviklgreipee 85
                +++++ r+++L +t gl+    d+ + +e+++  a   v aL+  + +++++ 
  CCD26155.2 28 QVTTYARPNDLCVTRGLNAkLYDDINNKEYIDFTAGIAVTALGHSN-PQVSKI 79
                578999*************66899999************9999887.555444 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2
        PucR  80 reipeelieaadelglPl 97 
                  e  e+++++a+++g+ +
  CCD26155.2 129 TEANEAALKFAKKHGITI 146
                 467889999999999875 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 0.38
        PucR  48 tglalkddpealaelvrelaeagvaaLviklg 79 
                 ++l+l+d+ + l++++re ++ ++a+L+++  
  CCD26155.2 188 SFLNLNDELTVLQNFIRE-KKDELAGLIVEPV 218
                 567777788888889988.4668999999874 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00018
        PucR  59 laelvrelaeagvaaLviklgr.eipeelieaadelglPlielpe.evpfv 107
                 ++++  ++++    +L+i+ +  e p+el++ a+elgl +i+  + +v+fv
  CCD26155.2 351 QRRFPHHIKDVRGKGLMIGAEFvEPPAELVKKARELGLLVITAGKsTVRFV 401
                 56667788889999*****974599****************9955488886 PP

>> PIG-H  GPI-GlcNAc transferase complex, PIG-H component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.8e-05      0.34      22      50 ..     391     419 ..     380     421 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.8e-05
       PIG-H  22 pfsggtsrrFiplekirdvvInEafkgfe 50 
                  ++g+++ rF+p  +i+d vI E+++ fe
  CCD26155.2 391 ITAGKSTVRFVPALTIEDEVIEEGLNIFE 419
                 45788999****************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       742  (0.0413855); expected 358.6 (0.02)
Passed bias filter:                      661  (0.0368676); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.27s 00:00:00.79 Elapsed: 00:00:00.39
# Mc/sec: 3262.08
//
Query:       CCD26156.2  [L=210]
Description: hypothetical protein NDAI_0G03790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-55  185.7   1.0    5.6e-55  185.5   1.0    1.1  1  IF4E      Eukaryotic initiation factor 4E


Domain annotation for each model (and alignments):
>> IF4E  Eukaryotic initiation factor 4E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5   1.0   3.1e-59   5.6e-55       1     159 []      35     193 ..      35     193 .. 0.95

  Alignments for each domain:
  == domain 1  score: 185.5 bits;  conditional E-value: 3.1e-59
                 EEEEEEEEEEE-TTT--SS-SGGG-EEEEEEEEHHHHHHHHHHS--GGGB-SSEEEEEEETT--SSTTSHHHHS-EEEEEEE--.---HHHHHHHHHHH CS
        IF4E   1 pLkskWtlwfdsksksksenyeeslkkvatfstveeFwslynnlkkpsklkvksdyhlFkkgikPmWEdpankkGGkwvirlkk.kekldrlWeellla 98 
                 pL+skWtlw+++ +  kse++++ l++v++f+tveeFw++ +n+++p++l+ ksdyh+F+ +i+P WEd+an+kGGkw++++++  +++d+lW ++lla
  CCD26156.2  35 PLNSKWTLWYTKPAVDKSESWSDLLRPVTSFETVEEFWAIIQNIPEPHELPLKSDYHVFRGDIRPEWEDTANSKGGKWSFQIRSkGSEIDELWLRTLLA 133
                 79********555559******************************************************************884555*********** PP

                 HHTT-SS--.-SEEEEEEEE-SSEEEEEEEES-TT-HHHHHHHHHHHHHT--------EEE CS
        IF4E  99 ligeqleeeedeicGvvvsvRkkedrisiWtrdasdeekvekigeklkevlelpeekkley 159
                 +ige+++eee+ei+Gvv+s+Rk ++++++Wt+++ +e+++++ig+k+k+vl+l e+ +le+
  CCD26156.2 134 VIGETIDEEESEINGVVLSIRKGGNKFALWTKSE-NEQALRNIGAKFKQVLKLTEDGHLEF 193
                 **********************************.89****************99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       589  (0.0328518); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1545.57
//
Query:       CCD26157.2  [L=293]
Description: hypothetical protein NDAI_0G03800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-16   59.1   0.0    9.9e-10   38.1   0.0    2.1  2  Hydrolase_4    Serine aminopeptidase, S33
      2e-09   37.5   0.0     0.0006   19.5   0.0    2.3  2  Abhydrolase_1  alpha/beta hydrolase fold
    1.6e-05   24.5   0.0    0.00011   21.8   0.0    2.0  1  Peptidase_S9   Prolyl oligopeptidase family
    1.9e-05   24.7   0.0     0.0049   16.8   0.0    2.4  2  BAAT_C         BAAT / Acyl-CoA thioester hydrolase C terminal
      6e-05   22.8   0.0    9.3e-05   22.2   0.0    1.4  1  FSH1           Serine hydrolase (FSH1)
    0.00024   20.2   0.2     0.0003   19.9   0.2    1.2  1  DUF818         Chlamydia CHLPS protein (DUF818)
     0.0034   17.0   0.0      0.022   14.3   0.0    2.2  1  DLH            Dienelactone hydrolase family
     0.0063   15.1   0.0     0.0088   14.6   0.0    1.2  1  PAF-AH_p_II    Platelet-activating factor acetylhydrolase, is
     0.0093   15.1   0.0      0.021   13.9   0.0    1.5  2  DUF1749        Protein of unknown function (DUF1749)
  ------ inclusion threshold ------
      0.047   13.3   0.0        0.4   10.2   0.0    2.0  2  Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)


Domain annotation for each model (and alignments):
>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   5.5e-13   9.9e-10      29     128 ..     100     198 ..      96     212 .. 0.83
   2 !   19.4   0.0   2.8e-07   0.00049     191     232 ..     211     257 ..     199     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 5.5e-13
  Hydrolase_4  29 aqGfavyalDhrGhGrsegkrghvpsfddyvdDlaafvekvkee.hpel.plfllGhSmGGliallyllrypdkvaglilsaPalkikaklk.appll 123
                  + + +v+++ +rG+G s+g+       + + +D+++++e +k++   ++ +l+l+G S+GG+ a+ ++ +y++ v+g+il +++l +++ ++ + p+ 
   CCD26157.2 100 QMNTSVFIYSYRGYGISQGQPT----EEGLKKDADCVIEYLKNDpFYKTkKLILYGRSLGGANAIYIASKYHNFVKGIILENTFLTVRKIIPyILPVS 193
                  66789************88776....8999************55233336*************************************98776666666 PP

  Hydrolase_4 124 klllk 128
                  k ++ 
   CCD26157.2 194 KYFSF 198
                  65554 PP

  == domain 2  score: 19.4 bits;  conditional E-value: 2.8e-07
  Hydrolase_4 191 t.....lPllllhGeaDkvvdpeasrelyerlgskdktlklypglyH 232
                        +P+l+l+G +Dk+v+p++ ++ly+ ++s+  +l  ++++ H
   CCD26157.2 211 VqidqdVPFLFLSGLKDKIVPPSQMKRLYDLCPSRYRELFEFNEGGH 257
                  3344559************************************9999 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   3.4e-07    0.0006      32     106 ..     105     178 ..      99     197 .. 0.76
   2 !   15.9   0.0   4.2e-06    0.0076     188     252 ..     200     259 ..     180     263 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 3.4e-07
                    EEEEEETTSTTSSSTTTGB.CHHSHHHHHHHHH....HH.HHH.CTTSSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESE CS
  Abhydrolase_1  32 villDlrGvgySspapacinddygtasvaddld....ri.lda.lgddkltlvGhSmGGmialayaaeyperVkalvllga 106
                    v+++  rG+g S+  p++     g   + +d d    ++  d+ ++ +kl+l G S+GG+ a + a++y + Vk+++l ++
     CCD26157.2 105 VFIYSYRGYGISQGQPTE----EG---LKKDADcvieYLkNDPfYKTKKLILYGRSLGGANAIYIASKYHNFVKGIILENT 178
                    899999**********74....34...444444100255544413446778***************************999 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 4.2e-06
                    HHHHHHHCCHHHHHHHHHCTHHHHSEEEEEEETTCSSSCHHHHHHHHHCHTS..EEEEEEETCSSSH CS
  Abhydrolase_1 188 sieqwpttdsaklllrlrelknvlaptlvisgtsDplvppkaledlaqllpk..krlvvisdagHla 252
                    +++ w+ +     +++ +       p l++sg +D++vpp+++ +l +l+p+   +l+ +  +gH++
     CCD26157.2 200 CKDIWNSERDIVQIDQ-DV------PFLFLSGLKDKIVPPSQMKRLYDLCPSryRELFEFNEGGHND 259
                    3333333333333333.33......***************88888889****988899999999975 PP

>> Peptidase_S9  Prolyl oligopeptidase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     6e-08   0.00011      47     170 ..     128     243 ..     119     258 .. 0.83

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 6e-08
                   HHHHHHHHHHHTTS--GGGEEEEEETHHHHHHHHHHHH-GGG-SEEEEESE---CCCHHCSTTSTHH.HCCCC--TTTCHHHHHHHHHH-CGGG--- CS
  Peptidase_S9  47 DfiaaaealakegyvdserlaitGgSyGGyltgaalnqrpdlFkaavaevpvvdvlrydsdtdllte.eymewgnpeeneegykelspyspldnvka 142
                   D   ++e+l +  + ++++l+++G S GG ++  ++ + +++ k+++ e+ ++ v++      +l   +y  + ++    +    +++ ++  ++ +
    CCD26157.2 128 DADCVIEYLKNDPFYKTKKLILYGRSLGGANAIYIASKYHNFVKGIILENTFLTVRKIIPY--ILPVsKYFSFFCK----D-I--WNSERDIVQIDQ 215
                   6667899**9999*******************************************99998..5666677777776....2.2..333344445567 PP

                   --EEEEEEETT-SSS-THHHHHHHHHHH CS
  Peptidase_S9 143 ypplLlihGlaDdrvppaealklvaaLq 170
                   ++p+L++ Gl+D+ vpp++  +l++ + 
    CCD26157.2 216 DVPFLFLSGLKDKIVPPSQMKRLYDLCP 243
                   ********************99998765 PP

>> BAAT_C  BAAT / Acyl-CoA thioester hydrolase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.7e-06    0.0049      10      53 ..     133     177 ..     130     188 .. 0.87
   2 !    5.4   0.0    0.0086        15     115     161 ..     216     257 ..     201     263 .. 0.75

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 2.7e-06
                 HHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS.SEEEEEEES CS
      BAAT_C  10 inyllrhpkvkkdkigllGiSkGgelalllasflk.kisavvlin 53 
                 i+yl++ p+ k +k  l+G+S Gg  a+++as+++  ++ ++l n
  CCD26157.2 133 IEYLKNDPFYKTKKLILYGRSLGGANAIYIASKYHnFVKGIILEN 177
                 89********************************95566666655 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0086
                 -SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT--.--EEEEETTB-S CS
      BAAT_C 115 kgpillvvgedDknwpSkesaekaserLkkagkkvevqlltYpkaGH 161
                 + p+l+++g +Dk++p +++      rL     +   +l  ++++GH
  CCD26157.2 216 DVPFLFLSGLKDKIVPPSQMK-----RLYDLCPSRYRELFEFNEGGH 257
                 79**************98887.....555555554456777777777 PP

>> FSH1  Serine hydrolase (FSH1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   5.2e-08   9.3e-05      80     200 ..     119     257 ..      31     258 .. 0.71

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 5.2e-08
        FSH1  80 kneyegleesldavkdyike....ngpfdGiiGFSqGaalaallaslleellkea...............shpslkfailvsGfkleepkyeeyyeedk 159
                 + + egl++  d+v +y+k+    +     + G S G+a a ++as+ ++  k                   p  k + +++    +++  ++ + + +
  CCD26157.2 119 QPTEEGLKKDADCVIEYLKNdpfyKTKKLILYGRSLGGANAIYIASKYHNFVKGIilentfltvrkiipyILPVSKYFSFFCKDIWNSE--RDIV-QID 214
                 66667777777777777776332222233466888888888888888887776546655555444333322222233333333333222..3344.444 PP

        FSH1 160 iqtptLhvlGelDtvvdeerseaLaeafkns.skvlkH.pggH 200
                   +p+L++ G +D++v+++++++L++ + ++ ++++++ +ggH
  CCD26157.2 215 QDVPFLFLSGLKDKIVPPSQMKRLYDLCPSRyRELFEFnEGGH 257
                 59*****************************977777626788 PP

>> DUF818  Chlamydia CHLPS protein (DUF818)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   1.7e-07    0.0003     166     227 ..      97     157 ..       9     167 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 1.7e-07
      DUF818 166 lakllganilvfnYPGvmsskGeitrenlakayqaCvrYLrDkeqGPkakeiiayGYsLGtl 227
                 + +++++ + ++ Y G   s+G+ t e l k  +  + YL++++   k k++i yG sLG+ 
  CCD26157.2  97 FYNQMNTSVFIYSYRGYGISQGQPTEEGLKKDADCVIEYLKNDPF-YKTKKLILYGRSLGGA 157
                 55788999*********************************9986.699***********85 PP

>> DLH  Dienelactone hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.2e-05     0.022      73     165 ..     121     237 ..     113     258 .. 0.73

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.2e-05
         DLH  73 vaeekvlddlkaavaylksvpevstkkvgvvGfCmGGalalllaaev.pevdaavafYG........................lspekeleeaakikap 146
                 + ee +++d++  ++ylk++p ++tkk+ + G  +GGa a+++a++  ++v++ +                              ++++ + + +  +p
  CCD26157.2 121 T-EEGLKKDADCVIEYLKNDPFYKTKKLILYGRSLGGANAIYIASKYhNFVKGIILENTfltvrkiipyilpvskyfsffckdIWNSERDIVQIDQDVP 218
                 4.6778999999*********************************997888887753334446666666666666666666554444444455555566 PP

         DLH 147 ilalfgeeDefipadevek 165
                  l+l g +D+++p +++++
  CCD26157.2 219 FLFLSGLKDKIVPPSQMKR 237
                 6666666666666666555 PP

>> PAF-AH_p_II  Platelet-activating factor acetylhydrolase, isoform II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.9e-06    0.0088     202     267 ..     115     184 ..     113     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.9e-06
                  HHTT-----SS--SS-..GGGGTT-..EEEEEEEEEEETHHHHHHHHHHHH-TTS-EEEEES---TTS-G CS
  PAF-AH_p_II 202 inlGepvenvldsdfd..lqqlKdn..ldtskvaviGHsFGgAtvikslsedteFrcaialDaWmlPvee 267
                  i++G+p+e+ l++d d  ++ lK++   +t+k+++ G s GgA +i   s+  +F ++i+l+   l v++
   CCD26157.2 115 ISQGQPTEEGLKKDADcvIEYLKNDpfYKTKKLILYGRSLGGANAIYIASKYHNFVKGIILENTFLTVRK 184
                  789999999999888888999**975457888*****************************988887775 PP

>> DUF1749  Protein of unknown function (DUF1749)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.2e-05     0.021      70     139 ..     108     175 ..      96     194 .. 0.78
   2 ?   -2.4   0.0       1.1   1.9e+03     230     246 ..     218     234 ..     196     270 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.2e-05
     DUF1749  70 ssyggwGtgsLkrDaeeiek....lveYlkktksGeekkekvvlmGHstGsqdvlyYltssnerdrekvdgail 139
                  sy g+G++  +  +e ++k    ++eYlk++     k++k++l G s G  + +y +++ +    + v+g il
  CCD26157.2 108 YSYRGYGISQGQPTEEGLKKdadcVIEYLKNDP--FYKTKKLILYGRSLGGANAIYIASKYH----NFVKGIIL 175
                 58999999977766665544333389*****94..7899***************98777664....46666665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.1
     DUF1749 230 pllillsekDefvpesv 246
                 p+l+l   kD++vp+s+
  CCD26157.2 218 PFLFLSGLKDKIVPPSQ 234
                 56666666666666655 PP

>> Peptidase_S15  X-Pro dipeptidyl-peptidase (S15 family)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00022       0.4      62     132 ..     107     176 ..     103     186 .. 0.88
   2 ?    0.7   0.0      0.19   3.3e+02     228     256 ..     216     245 ..     201     258 .. 0.79

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00022
                    EEE-TTSTTS-S---TTTTTHHHHHHHHHHHHHHC.TTEEEEEEEEEECHHHHHHHHHCTT--TTEEEEEEE CS
  Peptidase_S15  62 vqdvrGtggSeGeftvgdsdeaedgadvidWlakq.pwsnGkVgmtGiSYlGttqllaaatgvpalkaivpe 132
                    +++ rG g S+G+ t   +   +d+  vi+ l +   + + k   +G S +G +++++a++ +  +k i+ e
     CCD26157.2 107 IYSYRGYGISQGQPTE--EGLKKDADCVIEYLKNDpFYKTKKLILYGRSLGGANAIYIASKYHNFVKGIILE 176
                    6789*********999..666778888********77899**********************9999998876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.19
                    -S-EEEEEECCSSTTC.CHHHHHHHHHCCT CS
  Peptidase_S15 228 kapvllvgGwnDwnvk.ngaiklyealkap 256
                    ++p l+++G+ D++v   ++ +ly+  +++
     CCD26157.2 216 DVPFLFLSGLKDKIVPpSQMKRLYDLCPSR 245
                    799**********99999999999876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       443  (0.0247086); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 2043.27
//
Query:       CCD26158.2  [L=1393]
Description: hypothetical protein NDAI_0G03810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-09   37.7   4.0    2.8e-09   36.5   4.0    1.6  1  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
    3.5e-07   30.8   8.7     0.0013   19.5   0.3    4.6  5  WD40          WD domain, G-beta repeat
    0.00051   20.3   7.6     0.0017   18.7   7.6    1.9  1  zf-RING_2     Ring finger domain
    0.00054   19.8   4.1      0.002   18.0   4.1    2.0  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
  ------ inclusion threshold ------
       0.17   12.2  13.4       0.13   12.5  10.5    2.3  2  zf-rbx1       RING-H2 zinc finger domain
       0.38   10.7   3.1       0.77    9.7   3.1    1.4  1  GRA6          Granule antigen protein (GRA6)
          1    9.8   8.2        2.9    8.4   8.2    1.7  1  DUF3795       Protein of unknown function (DUF3795)
        3.2    7.9   7.9        8.2    6.6   7.9    1.6  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
        4.9    7.1  12.3        1.2    9.0   8.2    2.2  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   4.0   1.4e-12   2.8e-09       3      49 ..    1342    1388 ..    1340    1392 .. 0.94

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.4e-12
  Zn_ribbon_17    3 llksCayCelavkgrvvlcgvCeHvlHasCarewfenddlaeCpsGC 49  
                    ++  C++Ce ++k++++   +C+H +H++C ++wf  + ++ Cp+GC
    CCD26158.2 1342 PNSLCVICECPMKKLTLTALRCGHEAHFQCFKNWFLDEGMNTCPAGC 1388
                    6778*******************************99999******* PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.2   6.4e+03      13      32 ..     131     152 ..     119     153 .. 0.71
   2 !   13.1   0.1   6.9e-05      0.14       5      38 .]     240     275 ..     236     275 .. 0.77
   3 ?   -1.9   0.0       3.9   7.8e+03      13      25 ..     298     310 ..     288     323 .. 0.65
   4 !   19.5   0.3   6.5e-07    0.0013       6      37 ..     344     376 ..     339     376 .. 0.82
   5 ?   -3.8   0.0         9   1.8e+04       7      21 ..    1148    1163 ..    1146    1167 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 3.2
                 EEEEE..EETTSSEEEEEETTS CS
        WD40  13 vtsla..fspdgawlasGsdDg 32 
                  +s++  ++p+++ l+++++D+
  CCD26158.2 131 LSSISkiNDPNNNGLMCAGKDH 152
                 5566666999999999999887 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 6.9e-05
                 EEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                  +++ H  s++s++f+  ++  ++sG+ D  v+iWd
  CCD26158.2 240 NHISEHtRSINSFDFNMIQTHlIISGGQDACVKIWD 275
                 5678896669999777666773469**********9 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 3.9
                 EEEEEEETTSSEE CS
        WD40  13 vtslafspdgawl 25 
                 ++++++ p ++++
  CCD26158.2 298 IRDIKWMPGHDFV 310
                 5566555555553 PP

  == domain 4  score: 19.5 bits;  conditional E-value: 6.5e-07
                 EEESS.SS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGH.ss.vtslafspdgawlasGsdDgtvriW 37 
                 ++ +H ++   +l ++p+++++a+G++Dg++ +W
  CCD26158.2 344 KINAHtGPgL-CLNWHPHHNYIATGGRDGKCCLW 376
                 5567743356.*********************** PP

  == domain 5  score: -3.8 bits;  conditional E-value: 9
                  EESS.SSEEEEEEETT CS
        WD40    7 ltGH.ssvtslafspd 21  
                   + H ss +s+a sp+
  CCD26158.2 1148 PRSHmSSLRSFAGSPS 1163
                  5689999999998887 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   7.6   8.5e-07    0.0017       3      42 ..    1346    1386 ..    1344    1388 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8.5e-07
   zf-RING_2    3 CpICleelssadsvlllpCgHvfhreClerw.lrssst.CPl 42  
                  C+IC +++++  ++++l CgH  h++C+++w l +  + CP+
  CCD26158.2 1346 CVICECPMKK-LTLTALRCGHEAHFQCFKNWfLDEGMNtCPA 1386
                  ********76.5566667*************55544448*96 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   4.1   9.9e-07     0.002       1      39 [.    1346    1385 ..    1346    1387 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 9.9e-07
                  -TTT-S--SS-E..E-TTS--B-CHHHHHHHHCTSSB--T CS
    zf-C3HC4    1 CpiCleeakepn.elleCkHsfCskCirkilksrkkvkCP 39  
                  C iC + +k+ + ++l C+H+ +++C +++  +++ ++CP
  CCD26158.2 1346 CVICECPMKKLTlTALRCGHEAHFQCFKNWFLDEGMNTCP 1385
                  9*********99999*****************999999*9 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.2   4.3e+03      12      35 ..     855     877 ..     849     878 .. 0.72
   2 ?   12.5  10.5   6.7e-05      0.13       3      52 ..    1336    1385 ..    1335    1388 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.2
     zf-rbx1  12 eacieckapgdeecpvvlGeCgHa 35 
                 +a+i+++ + d+     ++ C+H+
  CCD26158.2 855 SAAIQIQDKTDT-LIDLVSICNHN 877
                 556777777777.7777789***6 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 6.7e-05
     zf-rbx1    3 CaiCrneleeacieckapgdeecpvvlGeCgHaFHlhCiskWlkt..rkvCP 52  
                  C  Cr++ ++ c+ c+ p ++  +++  +CgH+ H++C ++W+     ++CP
  CCD26158.2 1336 CDSCRKP-NSLCVICECPMKK-LTLTALRCGHEAHFQCFKNWFLDegMNTCP 1385
                  7788855.789**********.888888**************98768899*9 PP

>> GRA6  Granule antigen protein (GRA6)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.1   0.00038      0.77      79     143 ..    1032    1096 ..     992    1110 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00038
        GRA6   79 gGgqgdslaeaddetsdvaegdvdPfpvlidegkseargPsleerieeqddrrrpssvqeaqakv 143 
                  g +q+ s  e+++e s+    +v+P +++ +  k+  ++ s +  ie  +d+ +   v    +k+
  CCD26158.2 1032 GSSQDASAVEDENELSKRNVNNVQPKSAIFQSDKESVKTSSEDKTIESSGDQGKNDDVVAVATKT 1096
                  457999999*********99***********9******************999988887665555 PP

>> DUF3795  Protein of unknown function (DUF3795)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   8.2    0.0014       2.9       7      62 ..    1297    1355 ..    1293    1374 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0014
     DUF3795    7 ldCeeCeayeakekeekkkkkk...eafeelllaleeikCeGCreeekkalaeeCkirk 62  
                  ++Ce+C a   +e +++k +++   ++ +++l ++    C++Cr+ ++ ++ +eC+++k
  CCD26158.2 1297 IYCEKCGALLMNEVSKRKLTMEaqqTHDKTVLGKFGYWYCDSCRKPNSLCVICECPMKK 1355
                  79*******99999888888775556667778888999*********998888888775 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.9    0.0041       8.2      24      75 ..    1336    1385 ..    1332    1389 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0041
                  -TTT-SBTTS--TTCSTTTTTS-EEEBTTS-EEEHHHHHHHHHHHSTSSB-T CS
  zf-ANAPC11   24 cGicrvsfdGtcpsckfpGddcplvlGkckhnfhlhcilkwletetskglcp 75  
                  c  cr + +  c  c+ p  + +l   +c h  h  c  +w+  e   + cp
  CCD26158.2 1336 CDSCRKP-NSLCVICECPMKKLTLTALRCGHEAHFQCFKNWFLDEGM-NTCP 1385
                  8889876.889******************************987765.4566 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       5.1     1e+04      22      28 ..    1298    1304 ..    1298    1309 .. 0.74
   2 ?    9.0   8.2   0.00062       1.2       2      38 ..    1346    1385 ..    1345    1388 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 5.1
  zf-C3HC4_2   22 fCqkCil 28  
                  +C+kC +
  CCD26158.2 1298 YCEKCGA 1304
                  6999986 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00062
  zf-C3HC4_2    2 CpiCldmlkdpsvvt.pCgHvfCqkCilr.sLeekn.eCP 38  
                  C iC   +k+ + ++  CgH  + +C++   L+e+   CP
  CCD26158.2 1346 CVICECPMKKLTLTAlRCGHEAHFQCFKNwFLDEGMnTCP 1385
                  99999888875444479************446666579*9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      347  (0.0193541); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.84u 0.27s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 9106.29
//
Query:       CCD26159.2  [L=502]
Description: hypothetical protein NDAI_0G03820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-30  105.3  35.4    5.2e-25   88.1  11.7    2.0  2  MFS_1     Major Facilitator Superfamily


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1  11.7   2.9e-29   5.2e-25       2     294 ..      90     392 ..      89     395 .. 0.80
   2 !   27.8  24.8   6.3e-11   1.1e-06      34     172 ..     344     491 ..     343     496 .. 0.81

  Alignments for each domain:
  == domain 1  score: 88.1 bits;  conditional E-value: 2.9e-29
       MFS_1   2 llaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa..sslwlllvlrvlqGl 97 
                 ll++++ +l+  ++g+++p +l e+++is   +++++ l  lg+ +asl   ++   +G r  v++++ ++++++  +l+ +  s+++l l++ +  Gl
  CCD26159.2  90 LLLFLVFGLNDQTTGSLMP-TLVEEYNISRVKVSTIFFLQLLGYTLASLCNEWVHRLVGTRGgVIIATSICLIFF-SILV-SkpSNFYLYLFCYLPLGL 185
                 57889999***********.********************************99999*****7777777777777.6666.4547777*********** PP

       MFS_1  98 gagalfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafv.lfllllpeepperkrkspkeee....... 188
                 + g+l ++g++li  ++   +++  +gl+ a+++++a+++p+l + ++ +  W++vf+i   +s++a++ ++  + +e++++     ++e+e       
  CCD26159.2 186 AVGILDSLGNVLIGNLVV--HKNEFMGLMHAAYGAAAMVTPPLVSHFVGAKHWPLVFFIPLTISAIALIiVIPSFRFETAVKYDYICHEEDEvnemget 282
                 *****************7..6***************************9999***************88566777777777777777777766555544 PP

       MFS_1 189 ......kgtgpaplvp........awkallkdpvlwillialllfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr 273
                                +         +++l k+pvl+++++ +l+ + +  ++ ++l++yl e+   +  +++++++a ++++  +++l++g++sdr+ +
  CCD26159.2 283 pleenaL--------DiekvdeakFLTMLQKPPVLLYAIFLFLYLG-AEISTGSWLFTYLLETKSDN-KISMSYIVASYWMGLTVGRLCLGFVSDRYFP 371
                 4444443........1333445545667777776643333333332.5555********99999999.799999999999**9*************887 PP

       MFS_1 274 rrrlllallllllaalglall 294
                   ++   + + l+++   +++
  CCD26159.2 372 NVYRANRVYAYLTVCWYTVFV 392
                 776666666666666655554 PP

  == domain 2  score: 27.8 bits;  conditional E-value: 6.3e-11
       MFS_1  34 igllltlyalgaavaslplGrlsdrf.....Grrr.vlllglllfalglllllfa..ss.lw.lllvlrvlqGlgagalfpagaaliadwfpkeergra 122
                 ++ +++ y  g  v+ l lG++sdr+      + r +  l++ ++ ++++++lf+  s+ ++ +l+++ +l+G++ g lfp+g +++ ++ p++ + ++
  CCD26159.2 344 MSYIVASYWMGLTVGRLCLGFVSDRYfpnvyRANRvYAYLTVCWYTVFVVVGLFHsnSNfYFaVLFIVIFLCGVFIGPLFPNGSIVALQVLPRRLHISG 442
                 6789999******************7787774555255555555555577777864444555569********************************** PP

       MFS_1 123 igllsagfslGailgpllggllasslgWravfyilaivsllafvlfllll 172
                 ig++ a  ++G +  p   g++++ +g +++ +++ ++ +l+ +++  l+
  CCD26159.2 443 IGIAVAVGGCGGAALPYSVGVITHIAGVEWIPFLCWAMVVLVTLVWS-LY 491
                 *******************************6666666666666433.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       848  (0.0472977); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.30s 00:00:00.93 Elapsed: 00:00:00.47
# Mc/sec: 3210.85
//
Query:       CCD26160.2  [L=510]
Description: hypothetical protein NDAI_0G03830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.8e-34  115.8  15.6    1.4e-06   28.9   0.2    7.3  7  WD40         WD domain, G-beta repeat
    1.5e-19   70.1   0.9      0.038   14.3   0.0    6.4  7  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    3.4e-05   23.0   0.8        1.2    8.0   0.8    3.7  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
      5e-05   23.3   8.4      0.016   15.1   0.2    3.6  4  eIF2A        Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0098        44      10      38 .]      72     107 ..      62     107 .. 0.75
   2 !   28.9   0.2   3.1e-10   1.4e-06       8      37 ..     118     148 ..     112     149 .. 0.90
   3 !   23.5   0.1   1.6e-08     7e-05       8      38 .]     160     191 ..     152     191 .. 0.86
   4 !   25.0   0.6   5.2e-09   2.3e-05       2      38 .]     196     233 ..     195     233 .. 0.92
   5 !    8.7   0.0   0.00075       3.3       9      38 .]     247     276 ..     237     276 .. 0.79
   6 ?    0.1   0.0      0.41   1.8e+03      25      38 .]     306     319 ..     282     319 .. 0.74
   7 !   28.3   0.0   4.7e-10   2.1e-06       4      37 ..     328     363 ..     325     364 .. 0.87

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0098
                 S.SS......EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 H.ss......vtslafspdgawlasGsdDgtvriWd 38 
                 H ss      + ++++ p+g+ l+ ++++g   +W+
  CCD26160.2  72 HlSSnkvkhvIPAIKWTPEGRRLVVATYNGEFSLWN 107
                 443334223345788********99999*******8 PP

  == domain 2  score: 28.9 bits;  conditional E-value: 3.1e-10
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriW 37 
                  +H ssvt + +s+dg+w++sG+ Dg ++iW
  CCD26160.2 118 QAHdSSVTTMEYSHDGDWMISGDSDGIIKIW 148
                 58*889****************66******* PP

  == domain 3  score: 23.5 bits;  conditional E-value: 1.6e-08
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++H  +++++afs + + ++s+sdD+ ++iW+
  CCD26160.2 160 DAHtECIRDVAFSGNDSKFVSCSDDNILKIWN 191
                 389777*************************8 PP

  == domain 4  score: 25.0 bits;  conditional E-value: 5.2e-09
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ r+l+GH  +v s++++p+  +++s+s+D+ +++Wd
  CCD26160.2 196 KLERVLSGHhWDVKSCDWHPEMGLIISASKDNLIKLWD 233
                 77899****666*************************9 PP

  == domain 5  score: 8.7 bits;  conditional E-value: 0.00075
                 SSSSEEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40   9 GHssvtslafspdgawlasG.sdDgtvriWd 38 
                  H  v  ++f+p g  ++++ s+D+++r++d
  CCD26160.2 247 KH-TVLKVKFQPTGGNMIAAiSKDKSCRVFD 276
                 35.699999*******99999********98 PP

  == domain 6  score: 0.1 bits;  conditional E-value: 0.41
                 EEEEETTSEEEEEE CS
        WD40  25 lasGsdDgtvriWd 38 
                 ++ G +Dg+++ +d
  CCD26160.2 306 FTVGNYDGSIKHFD 319
                 566878****9776 PP

  == domain 7  score: 28.3 bits;  conditional E-value: 4.7e-10
                 EEEEE.SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   4 lrtlt.GH.ssvtslafspdgawlasGsdDgtvriW 37 
                 ++++  +H ++vtsl+++p g+ las+s+D+tvr+W
  CCD26160.2 328 THVIPyAHdKCVTSLSYNPMGNILASASKDRTVRFW 363
                 5664349*999************************* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   8.6e-06     0.038      25      66 ..      59     107 ..      56     113 .. 0.86
   2 !   13.1   0.1   1.9e-05     0.086      34      68 ..     117     151 ..     104     157 .. 0.87
   3 !    9.5   0.1   0.00026       1.1      25      73 ..     151     198 ..     147     206 .. 0.85
   4 !   11.4   0.0   6.6e-05       0.3      38      89 ..     205     255 ..     197     258 .. 0.85
   5 !    8.9   0.0    0.0004       1.8       3      67 ..     213     277 ..     211     291 .. 0.66
   6 ?    2.3   0.0     0.045     2e+02      10      67 ..     263     320 ..     258     331 .. 0.71
   7 !   12.8   0.0   2.5e-05      0.11      36      64 ..     334     362 ..     326     367 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 8.6e-06
  ANAPC4_WD40  25 ngqrvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  n+qr+ ++       +++k ++ + +++W p+g+ L+va+ +ge +l +
   CCD26160.2  59 NMQRILNVpskfthlSSNKVKHVIPAIKWTPEGRRLVVATYNGEFSLWN 107
                  7888888888888877888889999******************998865 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.9e-05
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldae 68 
                   +++ds+v+ +++++dg  +  + sdg +++ +a+
   CCD26160.2 117 MQAHDSSVTTMEYSHDGDWMISGDSDGIIKIWQAN 151
                  4679***************************9886 PP

  == domain 3  score: 9.5 bits;  conditional E-value: 0.00026
  ANAPC4_WD40  25 ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvv 73 
                  n+++v +l +d++ + +r++a++ +++ ++   +d+ +++ + ++gk+ 
   CCD26160.2 151 NFNMVKEL-DDAHTECIRDVAFSGNDSKFVSCSDDNILKIWNFSNGKLE 198
                  56666666.8999*********************************975 PP

  == domain 4  score: 11.4 bits;  conditional E-value: 6.6e-05
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                     v+s  W+p+  l+  a +d+ ++l d  sg++v+++   ++ +v ++++
   CCD26160.2 205 HWDVKSCDWHPEMGLIISASKDNLIKLWDPRSGNCVSTILKFKH-TVLKVKF 255
                  567999******************************99866555.4777766 PP

  == domain 5  score: 8.9 bits;  conditional E-value: 0.0004
  ANAPC4_WD40   3 wcptmDLiAlatedgellvfRl.ngqrvwtleedkedsevrsLaWkpdg.klLavaysdgevrllda 67 
                  w p+m Li  a++d+ + +    +g+ v t+   k +++v +++++p g +++a   +d ++r++d+
   CCD26160.2 213 WHPEMGLIISASKDNLIKLWDPrSGNCVSTI--LKFKHTVLKVKFQPTGgNMIAAISKDKSCRVFDI 277
                  7777777777777777766543266666666..5666777777777764256666666667777765 PP

  == domain 6  score: 2.3 bits;  conditional E-value: 0.045
  ANAPC4_WD40  10 iAlatedgellvf..RlngqrvwtleedkedsevrsLaWkp.dgklLavaysdgevrllda 67 
                  iA +++d++ +vf  R +++++  +    ++     L W+p +++++ v+  dg+++ +d 
   CCD26160.2 263 IAAISKDKSCRVFdiRHSMKELLCV---RDEVDYMTLLWNPiNESMFTVGNYDGSIKHFDL 320
                  5666666665554446666666666...445555678899768889999999999998775 PP

  == domain 7  score: 12.8 bits;  conditional E-value: 2.5e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrl 64 
                  ++d+ v+sL+++p g++La a +d +vr+
   CCD26160.2 334 AHDKCVTSLSYNPMGNILASASKDRTVRF 362
                  6899**********************997 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.8   0.00027       1.2     184     229 ..     118     168 ..      93     275 .. 0.60
   2 ?    2.1   0.0     0.017        77      62     104 ..     244     286 ..     235     299 .. 0.88
   3 !    7.8   0.0   0.00031       1.4     180     214 ..     329     363 ..     282     367 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00027
    Ge1_WD40 184 ieehsliveaafspdGtalatasedGevkffqvylede.....eeprCLhe 229
                   ++s +++  +s dG  +    +dG++k +q +++        +  C+ +
  CCD26160.2 118 QAHDSSVTTMEYSHDGDWMISGDSDGIIKIWQANFNMVkelddAHTECIRD 168
                 45678999999********************98765332234344555543 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.017
    Ge1_WD40  62 kglkgevldlafahvsskillavdekgslfvykveeveskllv 104
                  ++k +vl ++f  +  ++++a+ +  s  v+++++  ++ll+
  CCD26160.2 244 LKFKHTVLKVKFQPTGGNMIAAISKDKSCRVFDIRHSMKELLC 286
                 46888999999999999999***9999999*999999999887 PP

  == domain 3  score: 7.8 bits;  conditional E-value: 0.00031
    Ge1_WD40 180 gllkieehsliveaafspdGtalatasedGevkff 214
                  ++   ++ ++++ ++ p G  la as+d +v+f+
  CCD26160.2 329 HVIPYAHDKCVTSLSYNPMGNILASASKDRTVRFW 363
                 5566677789************************9 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   3.5e-06     0.016     105     184 ..      84     156 ..      58     162 .. 0.82
   2 !   10.3   0.2   0.00011      0.48      76     174 ..     136     230 ..     135     248 .. 0.84
   3 ?    3.7   0.0     0.011        51      95     162 ..     285     355 ..     247     363 .. 0.64
   4 ?   -4.5   0.9       3.7   1.7e+04      98     127 ..     426     455 ..     419     455 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 3.5e-06
                 EEEE-TTSSEEEEE-TTSSS-EEEEEETT..TTEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT-SSS-EEEEEETTTEEEE CS
       eIF2A 105 tiffspkgklvllaGfgnlaGeleiwdvk..kkkkiakaeaanatlvewspdgryvlTattaprlrvdngfkiwsysGklvy 184
                 +i++ p+g+ +++a +   +Ge ++w+ +  +++++ +a+ +  t++e+s dg++++   +      d  +kiw+ + ++v+
  CCD26160.2  84 AIKWTPEGRRLVVATY---NGEFSLWNGTsfNFESLMQAHDSSVTTMEYSHDGDWMISGDS------DGIIKIWQANFNMVK 156
                 799***********86...7*******88899***********************986543......566666666666665 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00011
                 EEESSSSCEEEEEECSCEEEEEEEEES--EE...EE-TTSSEEEEE-TTSSS-EEEEEETT..TTEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT-SS CS
       eIF2A  76 viyGkmpakvslfdlkvkviskleeqkrNti...ffspkgklvllaGfgnlaGeleiwdvk..kkkkiakaeaanatlvewspdgryvlTattaprlrv 169
                 +i G+++  +++++ + +++++l+ ++  +i    fs ++  ++ +   n+   l+iw+ +  k++ + + ++ +  +++w+p+  +++ a+       
  CCD26160.2 136 MISGDSDGIIKIWQANFNMVKELDDAHTECIrdvAFSGNDSKFVSCSDDNI---LKIWNFSngKLERVLSGHHWDVKSCDWHPEMGLIISASK------ 225
                 5899************99999999988876522279999*9**********...*****99889999****************9999988764...... PP

                 S-EEE CS
       eIF2A 170 dngfk 174
                 dn +k
  CCD26160.2 226 DNLIK 230
                 35555 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.011
                 EEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT.....TTEEEEEEE-TT--EEEE-TTSSEEEEEE CS
       eIF2A  95 iskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvk.....kkkkiakaeaanatlvewspdgryvlTat 162
                 ++  +e    t++++p ++ + +   gn  G+++ +d        ++ i  a+ ++ t++ ++p g+ ++ a+
  CCD26160.2 285 LCVRDEVDYMTLLWNPINESMFT--VGNYDGSIKHFDLLqdltkPTHVIPYAHDKCVTSLSYNPMGNILASAS 355
                 34445556667888887776554..468888888887654332133445556667777888888888877766 PP

  == domain 4  score: -4.5 bits;  conditional E-value: 3.7
                 EEEES--EEEE-TTSSEEEEE-TTSSS-EE CS
       eIF2A  98 leeqkrNtiffspkgklvllaGfgnlaGel 127
                 + + ++Nt++ ++ ++ + +++  n++G++
  CCD26160.2 426 FMTGANNTLLMQNGNNRMQMSNHINTNGAM 455
                 566778888888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.30s 00:00:00.86 Elapsed: 00:00:00.46
# Mc/sec: 3367.12
//
Query:       CCD26161.2  [L=483]
Description: hypothetical protein NDAI_0G03840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-46  158.8   3.6    2.9e-46  157.6   3.6    1.6  1  6PF2K     6-phosphofructo-2-kinase
    0.00095   19.3   0.0     0.0023   18.1   0.0    1.7  2  AAA_33    AAA domain
     0.0024   17.4   0.5      0.024   14.1   0.0    2.3  2  KTI12     Chromatin associated protein KTI12
  ------ inclusion threshold ------
      0.017   15.7   0.3       0.17   12.5   0.0    2.6  3  AAA_18    AAA domain
      0.029   14.3   0.0      0.092   12.7   0.0    1.8  2  Ten1      Telomere capping, CST complex subunit
       0.12   12.9   0.0       0.28   11.6   0.0    1.7  2  AAA_17    AAA domain


Domain annotation for each model (and alignments):
>> 6PF2K  6-phosphofructo-2-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.6   3.6   9.7e-50   2.9e-46      11     187 ..     157     356 ..     146     376 .. 0.91

  Alignments for each domain:
  == domain 1  score: 157.6 bits;  conditional E-value: 9.7e-50
                 .S-EEEEEESSTTSSHHHHHHHHHHHHH........HTT--EEEEEHHHHHHHHHSS.......---GGGGSTT-HHHHHHHHHHHHHHHHHHHHHHHT CS
       6PF2K  11 nsklvivlvGLpargKtyiskkltrylk........wlgvrtkvFnvgkyrreaska.......lsdaeffrpdneealklreklalaalkdllaylne 94 
                  +k+vi+++GLpa gK+ isk+l+ y++         + +r  +Fn+g++rr +sk+       l + +  + +n+++ +++e++a+ +l++l+++ln+
  CCD26161.2 157 PNKFVIIMIGLPAVGKSAISKQLVEYISqnftssddRVPLRIEIFNAGDMRRAMSKKrfntvmnLPNNSTDDIFNPKNSNKKEEFAKLTLNKLINELNN 255
                 589************************98887777777789999************9999999878889999*************************** PP

                 S--SEEEEES---SHHHHHHHHHHHHHTT........-EEEEEEEE--HHHHHHHHHHHHTTTSGGGTTS-HHHHHHHHHHHHHHHHTT-----.TTTT CS
       6PF2K  95 eegqvaifDAtNttrerRklilefveenn........lkvlflesicsdeeiikeNikevklsspDYkdketeeaikdflkRlenyekqyepld.deed 184
                 + ++++ifDAtN+t  rR++i+e++ e+n        l +++l++++s++++ik Ni++++++ +DY dk+++ a+kdf++Rl++y++q+ p++ de++
  CCD26161.2 256 DFCDIGIFDATNSTVLRRNFIFETLFEFNnqqtsnfnLIPIVLQVTSSNPNFIKFNIHNKSFN-EDYFDKPYHLAVKDFASRLKHYYSQFVPFStDEFN 353
                 ***********************9999888999999999************************.******************************66666 PP

                 TTS CS
       6PF2K 185 eel 187
                 + +
  CCD26161.2 354 HII 356
                 544 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.1   1.2e+04      69      78 ..     124     133 ..      98     145 .. 0.66
   2 !   18.1   0.0   7.8e-07    0.0023       1      84 [.     161     272 ..     161     326 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 4.1
      AAA_33  69 agrnvildat 78 
                   +++i+d+t
  CCD26161.2 124 PTNSYIVDNT 133
                 4567888887 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 7.8e-07
      AAA_33   1 lvllvGlpGsGKstlaerllkklgavllssdt.............lrrrlfg.......tdqqskt.......dytrvldrlyqilnelarkalsagrn 72 
                 +++++Glp++GKs  +++l++     + ssd+             +rr++ +       + +++ t       ++++ ++ ++ +ln+l+++     ++
  CCD26161.2 161 VIIMIGLPAVGKSAISKQLVEYISQNFTSSDDrvplrieifnagdMRRAMSKkrfntvmNLPNNSTddifnpkNSNKKEEFAKLTLNKLINELNNDFCD 259
                 89******************9888888888889999999999999444444433334442222222344433233333333566777777777777777 PP

      AAA_33  73 .vildatnlsrre 84 
                   i+datn +  +
  CCD26161.2 260 iGIFDATNSTVLR 272
                 5577888877644 PP

>> KTI12  Chromatin associated protein KTI12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.6       0.1   3.1e+02     169     204 ..       5      43 ..       1      65 [. 0.73
   2 !   14.1   0.0     8e-06     0.024       4      28 ..     162     189 ..     160     270 .. 0.81

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.1
                 HHHHHTS--SSSTT----...---HHHHHHHHHHHHHHH CS
       KTI12 169 liekkklkpnqatlskpl...aeanflqeLdketseivk 204
                 + ++++ +pn++t s++     ++n+  ++d+ ts+  k
  CCD26161.2   5 INNNNNTTPNNETTSNAItstVPTNVFSTVDSNTSKTAK 43 
                 567777888888877765111567999999999988765 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 8e-06
                 EEEE--TTSSHHHHHHHHHHHHHH...T CS
       KTI12   4 vvltGlPssGKstrakeLakalee...e 28 
                 +++ GlP++GKs ++k+L +++++   +
  CCD26161.2 162 IIMIGLPAVGKSAISKQLVEYISQnftS 189
                 89******************99984440 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       3.9   1.2e+04      25      49 ..      61      83 ..      47      96 .. 0.65
   2 ?   12.5   0.0   5.6e-05      0.17       1      56 [.     162     223 ..     162     300 .. 0.62
   3 ?   -0.2   0.0      0.45   1.3e+03      48      90 ..     392     432 ..     371     437 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.9
      AAA_18 25 gvnlrdvakenglllevdpealdes 49
                ++   d++ +n +++++++e   e+
  CCD26161.2 61 SYSKLDYLMNNSSYYYDNDE--IEK 83
                55556777777777777776..444 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 5.6e-05
      AAA_18   1 IlltGtpGvGKttlakeLskrl.gf.................gvnlrdvakenglllevdpealdeskrldedk 56 
                 I+  G p+vGK+ ++k L +   ++                 g          +++    ++  + + +++ ++
  CCD26161.2 162 IIMIGLPAVGKSAISKQLVEYIsQNftssddrvplrieifnaG----------DMRRAMSKK--RFNTVMNLPN 223
                 8899**************8875333455666544444434442..........222222222..3333333333 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.45
      AAA_18  48 eskrldedkldklldaleenssaleegknlvidghlaelesea 90 
                 +s+  ++++l +l++ + +n++  +  ++l+++ + + +  e+
  CCD26161.2 392 NSNSQRIHFLINLISSFVQNYN--QLYGHLYVEKVDNFFQNEQ 432
                 7788889999999999999986..8899999999998887766 PP

>> Ten1  Telomere capping, CST complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.7   1.1e+04      53      79 ..     235     261 ..     227     262 .. 0.69
   2 ?   12.7   0.0   3.1e-05     0.092      15      52 ..     385     429 ..     372     443 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.7
                 .......EEEE-TTTTTTS.GGGGSTT CS
        Ten1  53 kksapssvsvdinavLesvkaeelqvG 79 
                 ++++++ +++  n+++++++++  ++G
  CCD26161.2 235 SNKKEEFAKLTLNKLINELNNDFCDIG 261
                 344555588888888888888766666 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 3.1e-05
                 -CCGGGCTTCTEEEEEEE.....EEEEEECCCTEEEEEE..CCEE CS
        Ten1  15 flselaslsegkkvRfLg.....cvseYkvetghLtleh..nypr 52 
                  ls++++ s+++++ fL       v++Y++  ghL +e+  n+ +
  CCD26161.2 385 YLSKVPTNSNSQRIHFLInlissFVQNYNQLYGHLYVEKvdNFFQ 429
                 68999************9999999**************9866655 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.2e-05      0.28       1      68 [.     165     252 ..     165     291 .. 0.72
   2 ?   -3.7   0.0       5.1   1.5e+04      76     103 ..     424     451 ..     418     453 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 9.2e-05
                 EE-TTSSHHHHHHHHHH.............HHTEEEEEHHHHHHHHHHTT.....TS..HSSHHHHCTSHHHHHHHHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklve.............kygfthlsaGdllreeakrg.....gl..akardemrklpleekkelqkeaaekiaee 68 
                 +G+P +GK+ ++++lve              + +++++aGd+ r++ k++     +l  ++++d ++  + ++k+e+ k+  +k+ +e
  CCD26161.2 165 IGLPAVGKSAISKQLVEyisqnftssddrvPLRIEIFNAGDMRRAMSKKRfntvmNLpnNSTDDIFNPKNSNKKEEFAKLTLNKLINE 252
                 69**************96666666666555559**********999998864433344233444444455566666666666666554 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.1
                 EEE-SEEEETTEEEESSHHHHHHHH..S CS
      AAA_17  76 vdghprikeqagfldglpkevleelkpd 103
                 vd ++ ++++ ++  ++p+++++ + +d
  CCD26161.2 424 VDNFFQNEQEIQQPIEFPQHFIQPARVD 451
                 6777777777777788888888877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1115  (0.0621897); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3221.72
//
Query:       CCD26162.2  [L=158]
Description: hypothetical protein NDAI_0G03850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-36  126.6   1.2    1.5e-36  126.3   1.2    1.0  1  Med7      MED7 protein


Domain annotation for each model (and alignments):
>> Med7  MED7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   1.2   8.1e-41   1.5e-36       2     135 ..      13     151 ..      12     157 .. 0.91

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 8.1e-41
        Med7   2 saFPpPPpfyklfteenlkklkelkeeaekeeeeeedesaae.eqelelpkeLrvlipPeppkegeYrvFGenwsllkdklpsLeeqgieqly...... 93 
                 s++PpPPp++k+fteenl+kl+e+++ +++ + ee d+++++ ++++++ +eL++lipPe+p +++Yr+FG+ w++ kd+lp+L ++gi+qly      
  CCD26162.2  13 SLYPPPPPYIKFFTEENLSKLPEYQKLKKSGTIEEIDANKDTnDDTETITSELDFLIPPEMPRTQQYRAFGNIWQV-KDQLPDLGSMGITQLYktsnei 110
                 79************************9999988887777666466667789************************6.****************999999 PP

        Med7  94 .eedesedrkkeLkkLlrslllnfleLlgillknPeqsefeek 135
                   + +++ +++e +kLl+sllln+leL+gil++nPe   +e++
  CCD26162.2 111 gGPMNYQYKIEESRKLLKSLLLNYLELIGILSINPEL--YEKR 151
                 999999999**************************88..6554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       492  (0.0274416); expected 358.6 (0.02)
Passed bias filter:                      373  (0.0208043); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1215.72
//
Query:       CCD26163.2  [L=123]
Description: hypothetical protein NDAI_0G03860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-23   82.0  13.5    4.7e-23   81.2  13.5    1.4  1  zf-rbx1       RING-H2 zinc finger domain
    5.8e-17   61.5  10.2    7.7e-17   61.1  10.2    1.2  1  zf-ANAPC11    Anaphase-promoting complex subunit 11 RING-H2 f
    1.5e-05   25.3  14.2     0.0007   19.9  14.2    2.3  1  zf-RING_2     Ring finger domain
    0.00079   19.2   3.8    0.00079   19.2   3.8    2.7  2  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
     0.0031   17.3  11.7      0.031   14.1  11.7    2.3  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
     0.0049   16.6   1.3     0.0049   16.6   1.3    2.6  2  zf-RING_11    RING-like zinc finger
  ------ inclusion threshold ------
       0.33   11.1   7.1       0.49   10.6   0.5    2.5  2  zf-C3HC4_4    zinc finger of C3HC4-type, RING
        1.4    8.9  10.7        4.1    7.4   4.5    2.5  2  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
        1.6    8.4  15.4       0.11   12.2   5.6    2.3  2  Zn_ribbon_17  Zinc-ribbon, C4HC2 type
        1.9    8.6   9.5        5.2    7.2   9.0    2.0  1  zf-RING_UBOX  RING-type zinc-finger
        3.8    7.5  10.2         20    5.2  10.2    2.2  2  zf-RING_5     zinc-RING finger domain
        4.9    7.5  11.6         41    4.6  11.6    2.2  1  zf-RING-like  RING-like domain


Domain annotation for each model (and alignments):
>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2  13.5   3.1e-26   4.7e-23       1      55 []      55     113 ..      55     113 .. 0.96

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 3.1e-26
     zf-rbx1   1 dtCaiCrneleeacieckapgdee....cpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 d+CaiCrn+++e+ciec+ +  ++    c+ ++G C+HaFHlhCi+kW++tr++CPl++
  CCD26163.2  55 DNCAICRNHIMEPCIECQPKAMTDtdneCVAAWGVCNHAFHLHCINKWIQTRDACPLDN 113
                 79****************9998888899*****************************97 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1  10.2   5.2e-20   7.7e-17       3      84 ..      37     119 ..      35     120 .. 0.84

  Alignments for each domain:
  == domain 1  score: 61.1 bits;  conditional E-value: 5.2e-20
                 EEEEEEEE--B--B.-SSSSB-TTT-SBTTS--TTCS....T.TTTTS-EEEBTTS-EEEHHHHHHHHHHHSTSSB-TTTSSB--BE CS
  zf-ANAPC11   3 vkikevksvatwswdvasddvcGicrvsfdGtcpsck....f.pGddcplvlGkckhnfhlhcilkwletetskglcpmcrqtfklk 84 
                  +ik++ +va wswd+a d +c icr +    c +c+    +   ++c   +G c+h+fhlhci kw++t   ++ cp++ q ++l+
  CCD26163.2  37 FEIKKWTAVAFWSWDIAVD-NCAICRNHIMEPCIECQpkamTdTDNECVAAWGVCNHAFHLHCINKWIQT---RDACPLDNQPWQLA 119
                 68**************985.7*********99999962222213457*********************87...578******99986 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9  14.2   4.7e-07    0.0007      15      42 ..      69     111 ..      55     113 .. 0.61

  Alignments for each domain:
  == domain 1  score: 19.9 bits;  conditional E-value: 4.7e-07
   zf-RING_2  15 s.............vl...llpCgHvfhreClerwlrssstCPl 42 
                               ++      C+H fh +C+++w++++  CPl
  CCD26163.2  69 IecqpkamtdtdneCVaawG-VCNHAFHLHCINKWIQTRDACPL 111
                 22233333333334442322.4*********************8 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   4.9      0.35   5.2e+02       2      19 ..      57      72 ..      56      85 .. 0.74
   2 !   19.2   3.8   5.3e-07   0.00079      17      39 ..      89     111 ..      81     111 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.35
  zf-C3HC4_2  2 CpiCldmlkdpsvvtpCg 19
                C+iC + + +p   ++C+
  CCD26163.2 57 CAICRNHIMEP--CIECQ 72
                99999999998..55554 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 5.3e-07
  zf-C3HC4_2  17 pCgHvfCqkCilrsLeekneCPl 39 
                  C+H f+  Ci ++++  + CPl
  CCD26163.2  89 VCNHAFHLHCINKWIQTRDACPL 111
                 5*********************7 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1  11.7   2.1e-05     0.031       1      40 [.      57     111 ..      57     111 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.1e-05
                 -TTT-S--SS-E..................E-TTS--B-CHHHHHHHHCTSSB--TT CS
    zf-C3HC4   1 CpiCleeakepn.................elleCkHsfCskCirkilksrkkvkCPl 40 
                 C+iC + ++ep+                     C+H+f+ +Ci k+++  +   CPl
  CCD26163.2  57 CAICRNHIMEPCiecqpkamtdtdnecvaAWGVCNHAFHLHCINKWIQ--TRDACPL 111
                 *************************99999999***************..7778996 PP

>> zf-RING_11  RING-like zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   4.4      0.39   5.9e+02       1       9 [.      56      64 ..      56      71 .. 0.82
   2 !   16.6   1.3   3.3e-06    0.0049      20      29 .]      90      99 ..      75      99 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.39
  zf-RING_11  1 eCsICLeef 9 
                +C+IC + +
  CCD26163.2 56 NCAICRNHI 64
                7****8766 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.3e-06
  zf-RING_11 20 CsHtFHfkCI 29
                C+H+FH++CI
  CCD26163.2 90 CNHAFHLHCI 99
                *********9 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   1.2     0.053        79       1      16 [.      57      71 ..      57      83 .. 0.90
   2 ?   10.6   0.5   0.00033      0.49      16      34 ..      90     108 ..      89     111 .. 0.88

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.053
  zf-C3HC4_4  1 CPiCldYLekPvsleC 16
                C iC++ + +P  +eC
  CCD26163.2 57 CAICRNHIMEPC-IEC 71
                99********96.777 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00033
  zf-C3HC4_4  16 CGhsfClsCisslqkepdg 34 
                 C h f l+Ci+++ +  d+
  CCD26163.2  90 CNHAFHLHCINKWIQTRDA 108
                 *************999876 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.3     0.016        25      38      47 ..      55      64 ..      49      67 .. 0.83
   2 ?    7.4   4.5    0.0027       4.1      11      48 ..      81     117 ..      65     119 .. 0.72

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.016
                -B-TTT--B- CS
  zf-C3HC4_3 38 kkCpiCrrpi 47
                ++C iCr +i
  CCD26163.2 55 DNCAICRNHI 64
                6899999998 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0027
                 SBS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B-- CS
  zf-C3HC4_3  11 rprnvvllpCgHlvlCeeCaekllkrkkkCpiCrrpie 48 
                 ++  ++   C+H  +  +C +k+ + ++ Cp+ ++p +
  CCD26163.2  81 NECVAAWGVCNHA-FHLHCINKWIQTRDACPLDNQPWQ 117
                 344445556***9.99****************999876 PP

>> Zn_ribbon_17  Zinc-ribbon, C4HC2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   4.8      0.75   1.1e+03       6      22 ..      56      72 ..      52      87 .. 0.68
   2 ?   12.2   5.6     7e-05      0.11      22      46 ..      88     110 ..      79     112 .. 0.89

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.75
  Zn_ribbon_17  6 sCayCelavkgrvvlcg 22
                  +Ca+C  ++   ++ c+
    CCD26163.2 56 NCAICRNHIMEPCIECQ 72
                  68888877777766664 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 7e-05
  Zn_ribbon_17  22 gvCeHvlHasCarewfenddlaeCp 46 
                   gvC+H  H  C+++w ++ d   Cp
    CCD26163.2  88 GVCNHAFHLHCINKWIQTRD--ACP 110
                   79****************99..898 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.0    0.0035       5.2       1      36 [.      57     107 ..      57     117 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0035
  zf-RING_UBOX   1 CpIClelft......dP..lvlp............CGHtFCreCl..welskslegaf 36 
                   C IC++         +P  +  +            C H F+ +C+  w      +++ 
    CCD26163.2  57 CAICRNHIMepciecQPkaM--TdtdnecvaawgvCNHAFHLHCInkW-----IQTRD 107
                   99999766535555555432..1456888999999**********443.....44444 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3      0.43   6.4e+02      38      43 ..      56      61 ..      54      62 .. 0.74
   2 ?    5.2  10.2     0.013        20       2      41 ..      57     111 ..      56     114 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.43
   zf-RING_5 38 vCpiCr 43
                +C iCr
  CCD26163.2 56 NCAICR 61
                688887 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.013
   zf-RING_5   2 CnkCfekl...............skeek.fyltsCgHifCekClkkllekeavCpi 41 
                 C +C++++                +e   +    C H f+ +C++k  + ++ Cp+
  CCD26163.2  57 CAICRNHImepciecqpkamtdtDNE-CvAAWGVCNHAFHLHCINKWIQTRDACPL 111
                 88888888888888888888653333.3588899************9999999*97 PP

>> zf-RING-like  RING-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  11.6     0.027        41      11      41 ..      68     110 ..      57     111 .. 0.61

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.027
  zf-RING-like  11 GvrC.......snesCn.......vrlHvdCfqhyirthsskkCp 41 
                   ++ C       ++++C         ++H +C+++ i+t+    Cp
    CCD26163.2  68 CIECqpkamtdTDNECVaawgvcnHAFHLHCINKWIQTRDA--CP 110
                   555544444443444445555555************87776..87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 826.16
//
Query:       CCD26164.2  [L=927]
Description: hypothetical protein NDAI_0G03870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-08   35.1   0.2     0.0019   18.7   0.1    4.2  4  TPR_19    Tetratricopeptide repeat
    4.2e-08   32.8   4.2      0.024   14.8   0.0    5.4  5  TPR_8     Tetratricopeptide repeat
    6.8e-08   32.1   5.9      0.008   16.2   0.3    5.0  5  TPR_2     Tetratricopeptide repeat
    0.00022   20.9   4.5       0.72    9.8   0.2    4.6  4  TPR_1     Tetratricopeptide repeat
    0.00024   21.4   1.7       0.12   12.7   0.2    3.6  3  TPR_12    Tetratricopeptide repeat
     0.0012   19.5   6.2        1.7    9.6   0.1    5.3  6  TPR_14    Tetratricopeptide repeat
     0.0063   17.1   1.6        3.7    8.3   0.0    4.2  4  TPR_16    Tetratricopeptide repeat
     0.0078   16.2   2.6        1.9    8.7   0.1    4.8  5  TPR_7     Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.019   14.6   0.1        4.5    7.0   0.1    3.5  3  TPR_11    TPR repeat
      0.065   12.9   2.7        7.3    6.3   0.2    3.4  3  RPN7      26S proteasome subunit RPN7
      0.079   13.4   4.2       0.33   11.4   0.0    4.0  3  TPR_17    Tetratricopeptide repeat
       0.15   12.3   2.3       0.63   10.2   0.1    3.2  4  TPR_9     Tetratricopeptide repeat
       0.28   11.4   6.3         12    6.2   2.3    4.0  5  ANAPC3    Anaphase-promoting complex, cyclosome, subunit 3


Domain annotation for each model (and alignments):
>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       3.3   4.5e+03      26      51 ..     528     553 ..     525     556 .. 0.85
   2 !   10.8   0.0    0.0004      0.55      32      66 ..     560     594 ..     540     596 .. 0.89
   3 !   18.7   0.1   1.3e-06    0.0019       2      59 ..     665     721 ..     664     728 .. 0.92
   4 ?   -0.6   0.0       1.4   1.9e+03       9      27 ..     833     851 ..     828     854 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 3.3
      TPR_19  26 earllLAeallalgqldeAealLdal 51 
                 e+ ++LAe +++ g l  A ++ d+l
  CCD26164.2 528 ELDAQLAEKYMSVGILRSAVEIYDRL 553
                 677889999*9999999999999987 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.0004
      TPR_19  32 AeallalgqldeAealLdalpeedpddaryasLlA 66 
                 A ++ a g+ ++Ae +L +  e++p d+r++s l+
  CCD26164.2 560 ALCYAAVGDEKKAESILTERVESNPSDSRAWSILG 594
                 77*****************************9986 PP

  == domain 3  score: 18.7 bits;  conditional E-value: 1.3e-06
      TPR_19   2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpdda 59 
                 l+ g+ + A++++++  + d  +a a+ +L  a+++l+ l+eA  +L+++ ++d++  
  CCD26164.2 665 LECGKMDVAAEAFSRCVSLDQTHAMAWSNLSAAYVELNKLKEAHSCLKRAIASDAQ-K 721
                 5668999*******************************************999987.5 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 1.4
      TPR_19   9 eAlalleqalqedpknaea 27 
                 +Al+ +e+a+ +  +n+++
  CCD26164.2 833 AALECYEKAYRAISHNPDL 851
                 799************9998 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.21   2.8e+02       3      33 ..     555     585 ..     553     586 .. 0.85
   2 !   14.8   0.0   1.8e-05     0.024       2      33 ..     655     686 ..     654     687 .. 0.94
   3 !   10.4   0.4   0.00044      0.61       3      32 ..     690     719 ..     688     721 .. 0.92
   4 ?    0.2   0.3      0.85   1.2e+03      19      29 ..     833     843 ..     833     847 .. 0.85
   5 ?    0.3   0.0      0.81   1.1e+03       2      18 ..     863     879 ..     862     880 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.21
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 +++  +++y   gd ++A++ + + +e +p+
  CCD26164.2 555 MHCESALCYAAVGDEKKAESILTERVESNPS 585
                 5677899*************99998888886 PP

  == domain 2  score: 14.8 bits;  conditional E-value: 1.8e-05
                 CHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   2 eayynlgsiylklgdyeeAkeyyekaleldpd 33 
                 e +y  g++ l+ g+++ A e++ ++++ld++
  CCD26164.2 655 ETWYFYGCVALECGKMDVAAEAFSRCVSLDQT 686
                 78***************************986 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 0.00044
                 HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
       TPR_8   3 ayynlgsiylklgdyeeAkeyyekaleldp 32 
                 a+ nl+ +y +l++++eA +++++a+  d 
  CCD26164.2 690 AWSNLSAAYVELNKLKEAHSCLKRAIASDA 719
                 799***********************8876 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.85
                 HHHHHHHHHHH CS
       TPR_8  19 eAkeyyekale 29 
                 +A e+yeka +
  CCD26164.2 833 AALECYEKAYR 843
                 599******76 PP

  == domain 5  score: 0.3 bits;  conditional E-value: 0.81
                 CHHHHHHHHHHHTT-HH CS
       TPR_8   2 eayynlgsiylklgdye 18 
                 +a+  l s+y++lg++e
  CCD26164.2 863 DACEELVSAYESLGEME 879
                 6788899*******997 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.2       4.3   5.9e+03       2      14 ..     192     204 ..     191     204 .. 0.82
   2 ?   -1.6   0.0         3   4.2e+03       7      21 ..     559     573 ..     555     584 .. 0.83
   3 !   12.0   0.0   0.00013      0.18       2      34 .]     655     687 ..     654     687 .. 0.94
   4 !   16.2   0.3   5.8e-06     0.008       1      29 [.     688     716 ..     688     720 .. 0.92
   5 ?    2.6   0.0      0.13   1.8e+02      19      29 ..     833     843 ..     815     848 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 4.3
       TPR_2   2 ealynlGlayykl 14 
                  a++++++a++++
  CCD26164.2 192 VAHWWRARALMAQ 204
                 5899999999976 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 3
       TPR_2   7 lGlayyklgdyeeAl 21 
                  +l+y++ gd ++A+
  CCD26164.2 559 SALCYAAVGDEKKAE 573
                 5899******99997 PP

  == domain 3  score: 12.0 bits;  conditional E-value: 0.00013
       TPR_2   2 ealynlGlayyklgdyeeAleafekAleldPnn 34 
                 e +y  G+++++ g+ + A+eaf ++++ld ++
  CCD26164.2 655 ETWYFYGCVALECGKMDVAAEAFSRCVSLDQTH 687
                 78***************************9875 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 5.8e-06
       TPR_2   1 aealynlGlayyklgdyeeAleafekAle 29 
                 a a+ nl  ay +l++++eA+ ++++A++
  CCD26164.2 688 AMAWSNLSAAYVELNKLKEAHSCLKRAIA 716
                 569************************98 PP

  == domain 5  score: 2.6 bits;  conditional E-value: 0.13
       TPR_2  19 eAleafekAle 29 
                  Ale++ekA +
  CCD26164.2 833 AALECYEKAYR 843
                 69*******86 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.6     5e+03       8      21 ..     560     573 ..     556     574 .. 0.83
   2 ?    3.0   0.0     0.071        99       8      34 .]     661     687 ..     654     687 .. 0.84
   3 !    9.8   0.2   0.00053      0.72       1      29 [.     688     716 ..     688     719 .. 0.93
   4 !    6.3   0.2    0.0063       8.7      14      27 ..     828     841 ..     815     850 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.6
                 HHHHHHTT-HHHHH CS
       TPR_1   8 GnayfklgkydeAl 21 
                 +++y   g+ ++A+
  CCD26164.2 560 ALCYAAVGDEKKAE 573
                 89****99999996 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.071
                 HHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1   8 GnayfklgkydeAleyyekALelnPnn 34 
                 G + ++ gk d A e+++++++l+ ++
  CCD26164.2 661 GCVALECGKMDVAAEAFSRCVSLDQTH 687
                 788889999999************875 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00053
                 HHHHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1   1 akalynlGnayfklgkydeAleyyekALe 29 
                 a a+ nl +ay +l+k++eA  + ++A+ 
  CCD26164.2 688 AMAWSNLSAAYVELNKLKEAHSCLKRAIA 716
                 569************************96 PP

  == domain 4  score: 6.3 bits;  conditional E-value: 0.0063
                 TT-HHHHHHHHHHH CS
       TPR_1  14 lgkydeAleyyekA 27 
                  +++  Ale+yekA
  CCD26164.2 828 RKRPWAALECYEKA 841
                 688999*******9 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.26   3.6e+02      52      70 ..     560     578 ..     548     583 .. 0.65
   2 !   12.7   0.2   8.5e-05      0.12      23      73 ..     674     716 ..     655     720 .. 0.75
   3 ?    3.7   0.0     0.054        74       9      33 ..     821     845 ..     816     853 .. 0.68

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.26
      TPR_12  52 grlyralgryeeAlellee 70 
                 + +y a g+ ++A+++l+e
  CCD26164.2 560 ALCYAAVGDEKKAESILTE 578
                 5566666666666666655 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 8.5e-05
      TPR_12  23 lellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlelleeala 73 
                  e + +++ +       +    a +  nL+ +y +l++++eA++ l++a+a
  CCD26164.2 674 AEAFSRCVSLD------QT--HAMAWSNLSAAYVELNKLKEAHSCLKRAIA 716
                 44555554444......22..5999************************98 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.054
      TPR_12   9 laavlrrlgrydeAlellekaleia 33 
                 +a v+ +++r   Ale++eka++++
  CCD26164.2 821 VAKVEIWRKRPWAALECYEKAYRAI 845
                 5666666777777777777777766 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.4   8.9e+03       3      29 ..     529     555 ..     527     561 .. 0.77
   2 ?    6.3   0.0     0.015        21      11      42 ..     563     594 ..     558     596 .. 0.88
   3 ?   -1.8   0.0       5.9   8.2e+03      21      41 ..     640     660 ..     619     661 .. 0.80
   4 ?    5.0   0.0      0.04        55       3      41 ..     656     694 ..     654     697 .. 0.84
   5 !    9.6   0.1    0.0013       1.7       3      41 ..     690     729 ..     688     732 .. 0.87
   6 ?   -0.8   0.0       2.9     4e+03       2      33 ..     816     850 ..     815     853 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 6.4
      TPR_14   3 allalaeallalGdpdeAiallrrala 29 
                 + ++lae ++  G ++ A+++++r+  
  CCD26164.2 529 LDAQLAEKYMSVGILRSAVEIYDRLHM 555
                 557788888888889999999999865 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.015
      TPR_14  11 llalGdpdeAiallrralalaPddaeawllla 42 
                 ++a Gd ++A+ +l ++++ +P+d +aw  l+
  CCD26164.2 563 YAAVGDEKKAESILTERVESNPSDSRAWSILG 594
                 7889************************7776 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 5.9
      TPR_14  21 iallrralalaPddaeawlll 41 
                 +++l++ l+++  + e+w+++
  CCD26164.2 640 LKHLNDSLRQYSLNFETWYFY 660
                 688999999999999999887 PP

  == domain 4  score: 5.0 bits;  conditional E-value: 0.04
      TPR_14   3 allalaeallalGdpdeAiallrralalaPddaeawlll 41 
                  ++ ++ + l+ G+ d A++++ r+++l+ ++a aw  l
  CCD26164.2 656 TWYFYGCVALECGKMDVAAEAFSRCVSLDQTHAMAWSNL 694
                 56666667889999**********************776 PP

  == domain 5  score: 9.6 bits;  conditional E-value: 0.0013
      TPR_14   3 allalaeallalGdpdeAiallrrala.laPddaeawlll 41 
                 a+  l +a+ +l +++eA  +l+ra+a +a +++++w  +
  CCD26164.2 690 AWSNLSAAYVELNKLKEAHSCLKRAIAsDAQKNWRIWENY 729
                 7888999******************99556799***9876 PP

  == domain 6  score: -0.8 bits;  conditional E-value: 2.9
      TPR_14   2 eallalaeallalGdpdeAiallrra...lalaPd 33 
                 + +++ a+++  + +p +A++++++a   ++++Pd
  CCD26164.2 816 RCWRLVAKVEIWRKRPWAALECYEKAyraISHNPD 850
                 56777777887777877888888886222556776 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.5     1e+04      16      33 ..      91     108 ..      91     109 .. 0.88
   2 ?    0.2   0.1      0.89   1.2e+03      36      53 ..     193     211 ..     183     212 .. 0.78
   3 ?    3.7   0.0     0.075     1e+02       7      42 ..     563     595 ..     543     597 .. 0.60
   4 !    8.3   0.0    0.0027       3.7       7      61 ..     664     715 ..     661     722 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.5
      TPR_16  16 AaaaleaalkrdpssPda 33 
                 A+a+l+++l +++  P+a
  CCD26164.2  91 AIALLQTFLQNNYTGPLA 108
                 8999*****999999986 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.89
      TPR_16  36 Allllgdaal.rqgrlaeA 53 
                 A++++++a+  +++ l+eA
  CCD26164.2 193 AHWWRARALMaQLSLLPEA 211
                 9********9444888877 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.075
      TPR_16   7 alragdyddAaaaleaalkrdpssPdaaeAllllgd 42 
                 +++ gd  +A+  l++ ++++   P + +A+  lgd
  CCD26164.2 563 YAAVGDEKKAESILTERVESN---PSDSRAWSILGD 595
                 334444455555555555555...555556666655 PP

  == domain 4  score: 8.3 bits;  conditional E-value: 0.0027
      TPR_16   7 alragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyraal 61 
                 al+ g+ d Aa+a+ + + +d     +a A+ +l  a+ +++ l+eA   +++a+
  CCD26164.2 664 ALECGKMDVAAEAFSRCVSLD---QTHAMAWSNLSAAYVELNKLKEAHSCLKRAI 715
                 6777999**************...99*******************9966555555 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.18   2.5e+02       6      34 ..     560     586 ..     556     588 .. 0.87
   2 !    8.7   0.1    0.0014       1.9       1      32 [.     690     719 ..     690     722 .. 0.90
   3 ?   -2.6   0.0       5.6   7.7e+03      11      33 ..     735     757 ..     734     759 .. 0.75
   4 ?   -0.1   0.1      0.89   1.2e+03      18      28 ..     834     845 ..     833     852 .. 0.76
   5 ?   -0.3   0.0         1   1.4e+03       1      16 [.     864     879 ..     864     880 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.18
       TPR_7   6 arlysrlGdyeeAielyeqsLaltkdped 34 
                 a +y ++Gd ++A++++++  ++++ p+d
  CCD26164.2 560 ALCYAAVGDEKKAESILTE--RVESNPSD 586
                 778999*************..99999987 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0014
       TPR_7   1 aLlnLarlysrlGdyeeAielyeqsLaltkdp 32 
                 a++nL  +y++l++ +eA +++++  a+++d 
  CCD26164.2 690 AWSNLSAAYVELNKLKEAHSCLKR--AIASDA 719
                 789*********************..888775 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 5.6
       TPR_7  11 rlGdyeeAielyeqsLaltkdpe 33 
                 +l+++++ +  ++q+  +++d +
  CCD26164.2 735 KLNEWDDVLVACRQLVDIRRDTS 757
                 68999999888888558888766 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.89
       TPR_7  18 AielyeqsL.al 28 
                 A+e+ye++  a+
  CCD26164.2 834 ALECYEKAYrAI 845
                 99*****76555 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 1
       TPR_7   1 aLlnLarlysrlGdye 16 
                 a+  L ++y++lG++e
  CCD26164.2 864 ACEELVSAYESLGEME 879
                 5677999******987 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0047       6.5       6      41 ..     666     701 ..     663     702 .. 0.93
   2 ?    7.0   0.1    0.0033       4.5       3      24 ..     697     718 ..     696     721 .. 0.91
   3 ?    0.2   0.1      0.44   6.1e+02      12      21 ..     833     842 ..     833     851 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0047
      TPR_11   6 eqGkyeeAieaYkkAlkldPdnaeayynLGlayykq 41 
                 e Gk + A ea+++ + ld++ a a++nL +ay ++
  CCD26164.2 666 ECGKMDVAAEAFSRCVSLDQTHAMAWSNLSAAYVEL 701
                 78999****************************876 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0033
      TPR_11   3 ayyeqGkyeeAieaYkkAlkld 24 
                 ay+e++k++eA  ++k+A++ d
  CCD26164.2 697 AYVELNKLKEAHSCLKRAIASD 718
                 7******************976 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 0.44
      TPR_11  12 eAieaYkkAl 21 
                 +A+e+Y+kA 
  CCD26164.2 833 AALECYEKAY 842
                 69******95 PP

>> RPN7  26S proteasome subunit RPN7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.016        22      41      68 ..     532     559 ..     528     562 .. 0.90
   2 ?    6.3   0.2    0.0053       7.3      33      98 ..     685     748 ..     663     759 .. 0.87
   3 ?   -2.2   0.0       2.2     3e+03      76     113 ..     818     896 ..     815     912 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.016
                 HHHHHHHHCT-HHHHHHHHHTCCCC--S CS
        RPN7  41 dlaehYlkigdleeAlkaysrireycts 68 
                 +lae Y+++g l++A++ y r++ +c s
  CCD26164.2 532 QLAEKYMSVGILRSAVEIYDRLHMHCES 559
                 799********************99976 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0053
                 HHHHHHHHHHHHHHHHCT-HHHHHHHHHTCCCC--SHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH CS
        RPN7  33 eeirrakldlaehYlkigdleeAlkaysrireyctslkhkidmllnlirvaiffndwdlvskylek 98 
                    ++a+ +l   Y++  +l+eA  +++r++    +      ++ n + v++ +n+wd v +   +
  CCD26164.2 685 QTHAMAWSNLSAAYVELNKLKEAHSCLKRAIASDAQ--KNWRIWENYMLVSVKLNEWDDVLVACRQ 748
                 55689999*********************9876655..67889***************99887665 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.2
                 HHHHHHHHHHTT-HHHHHHHHHHHHCSSS---..........................................HHHHH CS
        RPN7  76 llnlirvaiffndwdlvskylekakellekggd.........................................werkn 113
                 +  + +v+i+++  + + +  eka++ ++   d                                         w++k+
  CCD26164.2 818 WRLVAKVEIWRKRPWAALECYEKAYRAISHNPDleidekiwnetvdaceelvsayeslgemegkygkssfvckdWKYKA 896
                 5666677777777777777777777777776665555555555554444444444445555555555555555555555 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.75     1e+03       7      24 ..     581     598 ..     577     625 .. 0.74
   2 ?   -2.5   0.0       6.5     9e+03       4      27 ..     645     668 ..     643     671 .. 0.79
   3 ?   11.4   0.0   0.00024      0.33       2      33 ..     677     708 ..     676     709 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.75
      TPR_17   7 eldPnnadaynnLAelll 24 
                 e +P+++ a+  L+ +  
  CCD26164.2 581 ESNPSDSRAWSILGDIRQ 598
                 779999999988887654 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 6.5
      TPR_17   4 kaleldPnnadaynnLAelllknG 27 
                  +l+++  n++ ++ ++ + l+ G
  CCD26164.2 645 DSLRQYSLNFETWYFYGCVALECG 668
                 57899999*****98887777666 PP

  == domain 3  score: 11.4 bits;  conditional E-value: 0.00024
      TPR_17   2 ylkaleldPnnadaynnLAelllknGdlmtAr 33 
                 + +++ ld ++a a+ nL  ++ ++++l++A+
  CCD26164.2 677 FSRCVSLDQTHAMAWSNLSAAYVELNKLKEAH 708
                 679***************************97 PP

>> TPR_9  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       3.2   4.4e+03      29      40 ..     193     204 ..     192     206 .. 0.82
   2 ?   -3.2   0.0       7.1   9.8e+03      34      63 ..     558     587 ..     551     591 .. 0.74
   3 ?   10.2   0.1   0.00046      0.63       9      60 ..     668     719 ..     663     722 .. 0.91
   4 ?   -3.5   0.0       8.6   1.2e+04      40      49 ..     833     842 ..     815     851 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 3.2
       TPR_9  29 peerrdRGllla 40 
                 ++ +r R+l+ +
  CCD26164.2 193 AHWWRARALMAQ 204
                 6789***99875 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 7.1
       TPR_9  34 dRGlllaqlGclsaAladLeaylalapdap 63 
                 + +l++a +G+ ++A   L   ++ +p++ 
  CCD26164.2 558 ESALCYAAVGDEKKAESILTERVESNPSDS 587
                 678999999998888877777777777665 PP

  == domain 3  score: 10.2 bits;  conditional E-value: 0.00046
       TPR_9   9 edweralavverllllaPddpeerrdRGlllaqlGclsaAladLeaylalap 60 
                  ++++a ++  r + l+  ++  +     ++++l+ l++A  +L +++a + 
  CCD26164.2 668 GKMDVAAEAFSRCVSLDQTHAMAWSNLSAAYVELNKLKEAHSCLKRAIASDA 719
                 67899******************************************98765 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 8.6
       TPR_9  40 aqlGclsaAl 49 
                 a l+c+++A 
  CCD26164.2 833 AALECYEKAY 842
                 3344444443 PP

>> ANAPC3  Anaphase-promoting complex, cyclosome, subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.064        88      29      62 ..     556     593 ..     533     597 .. 0.80
   2 ?    3.7   0.2     0.052        72      36      82 .]     633     680 ..     614     680 .. 0.89
   3 ?    6.2   2.3    0.0089        12      26      81 ..     657     713 ..     635     714 .. 0.87
   4 ?    3.4   0.3     0.067        92      30      76 ..     695     743 ..     687     747 .. 0.78
   5 ?   -3.5   0.0       9.3   1.3e+04       8      23 ..     834     849 ..     833     850 .. 0.65

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.064
                 H...HHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHH CS
      ANAPC3  29 l...AlclylngqykrAyellrka.klnskslgcrylf 62 
                 +   Alc+   g+ k+A  +l +  ++n+++ +++ ++
  CCD26164.2 556 HcesALCYAAVGDEKKAESILTERvESNPSDSRAWSIL 593
                 344499******************99999999888776 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.052
                 TT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-SS CS
      ANAPC3  36 ngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLekl 82 
                 + +y+  ++ l+++ +++s + + +y ++ ++l+ +k++ A  a++++
  CCD26164.2 633 TRDYNIVLKHLNDSlRQYSLNFETWYFYGCVALECGKMDVAAEAFSRC 680
                 6788889999999999999999********************999875 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.0089
                 HHHHHHHHHHTT-HHHHHHHHHCT.SHHHC-HHHHHHHHHHHHHTT-HHHHHHHH-S CS
      ANAPC3  26 ayllAlclylngqykrAyellrka.klnskslgcrylfAqcllkLkkyeeAiaaLek 81 
                  y+++ + ++ g+ + A e ++++  l+ ++  ++  +  ++++L+k++eA ++L++
  CCD26164.2 657 WYFYGCVALECGKMDVAAEAFSRCvSLDQTHAMAWSNLSAAYVELNKLKEAHSCLKR 713
                 46679999999****************************************999986 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.067
                 HHHHHHTT-HHHHHHHHHCT.SHHHC-H.HHHHHHHHHHHHTT-HHHHH CS
      ANAPC3  30 AlclylngqykrAyellrka.klnsksl.gcrylfAqcllkLkkyeeAi 76 
                 + ++ ++++ k+A+  l++a  ++ +   +++  +  +++kL+++++ +
  CCD26164.2 695 SAAYVELNKLKEAHSCLKRAiASDAQKNwRIWENYMLVSVKLNEWDDVL 743
                 5689999999999999999965555554677778889999999999876 PP

  == domain 5  score: -3.5 bits;  conditional E-value: 9.3
                 HHHHHHHHH.HHH--H CS
      ANAPC3   8 Aiflaerllaaetesp 23 
                 A+ ++e+++ a +++p
  CCD26164.2 834 ALECYEKAYRAISHNP 849
                 6677777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (927 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       585  (0.0326287); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.46
# Mc/sec: 6074.10
//
Query:       CCD26165.2  [L=284]
Description: hypothetical protein NDAI_0G03880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.3e-10   41.1   0.1    2.8e-10   40.0   0.1    1.6  1  tRNA_anti-codon  OB-fold nucleic acid binding domain
    1.5e-06   28.8   0.0    3.8e-06   27.5   0.0    1.7  1  RPA_C            Replication protein A C terminal
  ------ inclusion threshold ------
      0.023   14.9   0.0      0.042   14.0   0.0    1.5  1  tRNA_anti_2      OB-fold nucleic acid binding domain
      0.032   13.9   0.4       0.13   12.0   0.0    1.9  2  CDC24_OB3        Cell division control protein 24, OB domain 
      0.075   12.9   0.0       0.13   12.1   0.0    1.4  1  HTH_IclR         IclR helix-turn-helix domain
       0.15   11.9   0.1       0.43   10.4   0.1    1.4  1  LON_substr_bdg   ATP-dependent protease La (LON) substrate-bi


Domain annotation for each model (and alignments):
>> tRNA_anti-codon  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.1   9.4e-14   2.8e-10       1      74 [.      69     157 ..      69     159 .. 0.96

  Alignments for each domain:
  == domain 1  score: 40.0 bits;  conditional E-value: 9.4e-14
                      EEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET..................HHHHHHHTTS-TTSEEEEEEEEEECTTSSEEEEEEEEE CS
  tRNA_anti-codon   1 VtvaGrvtsisdrsggkvifidlrDgtgriqvvlfr..................eeatklaenlkeGdvvrvtGrvkrrpggelelkveeie 74 
                      V+++G +++i  +++ + i+++++Dgtg+i+v  ++                  ++ +++a++ ++G++v+++G +k++ g+   +++  i+
       CCD26165.2  69 VCFVGVIRNI--TDHTSNIYLTVEDGTGQIEVRKWSedandmasgpgddsdptkDSSSQVAQQYQIGTYVKIFGALKEFGGK-KNIQYAVIK 157
                      7899******..*******************************************************************999.999998876 PP

>> RPA_C  Replication protein A C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.3e-09   3.8e-06      13     104 .]     181     279 ..     169     279 .. 0.63

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 1.3e-09
                 XX...........XXXXXXXXXXXXXXXXXXXXXXXX.XSXHHHHHHHHHHHH.SXSTT....TEEHHHHHHHSTSXHHHHHHHHHHHHHTTSEEESSS CS
       RPA_C  13 ag.....aagaavavsaggsamgtdgalsgnqaklankgltalaqqvlnlikqspesee....GvhvdeiaqklrlsvndvkqavdeLsneGiiYsTiD 102
                 ++     ++g++++v+ g ++ +t g+    ++++ + +     +++l++ k+++e+++     v +  i+q+l++++n+ ++   +L ++G iY T D
  CCD26165.2 181 GKlpdpsTGGSSSQVQEG-QQQSTSGQSLFVSENDSS-SSRSPSDRILEFCKKQCEGKDantfAVPIPLISQSLNIDENTTRNCCATLTEQGFIYPTFD 277
                 443333112222222222.222222322223333333.45677899*******888776333369999******************************* PP

                 TT CS
       RPA_C 103 de 104
                 d+
  CCD26165.2 278 DN 279
                 96 PP

>> tRNA_anti_2  OB-fold nucleic acid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   1.4e-05     0.042      15      64 ..      63     116 ..      42     159 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.4e-05
  tRNA_anti_2  15 eaelkkavwvrGeisnlkrkasghvYftLkDekakisavifrsraaklk......f 64 
                  ++el++ v+  G i n++  ++  +Y+t  D + +i++  ++++a+ +        
   CCD26165.2  63 NQELHH-VCFVGVIRNITD-HTSNIYLTVEDGTGQIEVRKWSEDANDMAsgpgddS 116
                  678855.9*********54.4778******************99998874444431 PP

>> CDC24_OB3  Cell division control protein 24, OB domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   4.3e-05      0.13       7      65 ..      67     136 ..      63     166 .. 0.78
   2 ?   -0.2   0.1      0.22   6.6e+02     162     181 ..     227     247 ..     192     271 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4.3e-05
   CDC24_OB3   7 lnvtLlGrvvaifreknsekkkmdryslrieDttGaidatlweeagklhfk..................rlrvGhlv 65 
                  +v+ +G++ +i+   + ++    + +l++eD tG+i++  w+e +++  +                  + ++G +v
  CCD26165.2  67 HHVCFVGVIRNIT---DHTS----NIYLTVEDGTGQIEVRKWSEDANDMASgpgddsdptkdsssqvaqQYQIGTYV 136
                 589999***9994...3333....446*****************999888767776666666666666666666666 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.22
   CDC24_OB3 162 efCqcsv.aevv.refeleitL 181
                 efC++++      ++f + i L
  CCD26165.2 227 EFCKKQCeG-KDaNTFAVPIPL 247
                 688888853.333666555544 PP

>> HTH_IclR  IclR helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.4e-05      0.13      23      49 ..     247     273 ..     237     275 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 4.4e-05
                 HHHHHHTS-HHHHHHHHHHHHHTTSEE CS
    HTH_IclR  23 elArrtglpkStvhRlLqtLvelGyve 49 
                  +++ + +   t++++++tL+e+G++ 
  CCD26165.2 247 LISQSLNIDENTTRNCCATLTEQGFIY 273
                 699999******************985 PP

>> LON_substr_bdg  ATP-dependent protease La (LON) substrate-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00014      0.43      59     117 ..      62     115 ..      31     167 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00014
  LON_substr_bdg  59 siselysvGtvarIvqilrlddgrikvvle.gleRvkikkl.ekekeegylvaeveiiedd 117
                      ++el++v  v++I++i ++ + +i +++e g   ++++k+ e+     + +a      dd
      CCD26165.2  62 YNQELHHVCFVGVIRNI-TDHTSNIYLTVEdGTGQIEVRKWsED----ANDMASG--PGDD 115
                     57899************.6777888888886888*******333....3334444..2232 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       592  (0.0330191); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2118.74
//
Query:       CCD26166.2  [L=470]
Description: hypothetical protein NDAI_0G03890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   7.4e-134  445.9   1.4   9.2e-134  445.6   1.4    1.1  1  Glyco_hydro_72   Glucanosyltransferase
     0.0018   17.4   0.4      0.019   14.1   0.4    2.1  1  Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel dom
     0.0033   17.0   0.0     0.0053   16.4   0.0    1.2  1  Glyco_hydro_cc   Glycosyl hydrolase catalytic core


Domain annotation for each model (and alignments):
>> Glyco_hydro_72  Glucanosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  445.6   1.4  1.5e-137  9.2e-134       5     312 ..      17     330 ..      13     333 .. 0.97

  Alignments for each domain:
  == domain 1  score: 445.6 bits;  conditional E-value: 1.5e-137
                     SSTTS--EEEETTEEEETTT-BBE-EEEEE--BE------SSB-GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEE CS
  Glyco_hydro_72   5 aeeaveaieikgnkffdsksgeqfyikGvdyqpggseevsslvdpladaeaCkrdikllkelgvntvrvyavdnskdhdeCmkalsdagiyvild 99 
                     + +++++i ikg++f+d+ ++e+f+i+G+dyqpggs+ev++ +dpl+d++ C+rdi l+++lg+ntvr+y+++++++hd+Cm++l++agiy+ild
      CCD26166.2  17 TLASINPIIIKGKRFYDAVTNERFFIRGIDYQPGGSSEVNDEKDPLSDPDLCARDILLFQDLGINTVRIYSINPDLNHDKCMTLLATAGIYLILD 111
                     557899***************************************************************************************** PP

                     S-BT..TBS--TTS-..---HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GG.GHHHHHHHHHHHHHHHHHSSS----EEEEE---TTTH CS
  Glyco_hydro_72 100 lnep..kesinradpassynedllervfkvidafkeyknvlgffaGnevvndksnta.asayvkavvrdvkeyikkkkerkiPvGysaaddaelr 191
                     +n+p  ++++nr++p+++yn+ +l++vf+vid+f +y+n+lgffaGne+vndk++++ +++y+k ++ d+++yi  +++r+iPvGysaadd ++r
      CCD26166.2 112 VNSPleNQHLNRYEPWTTYNTIYLKHVFSVIDEFLQYNNTLGFFAGNEIVNDKRSAQySPPYIKKLIGDMRRYIDVHSTRRIPVGYSAADDLKYR 206
                     ***99999***********************************************99899*********************************** PP

                     HHHHHHTTBTT-.....--S-EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE---SSSS---THHHHHTSHHHHTTEEEEEES-SB-- CS
  Glyco_hydro_72 192 velaeylaCgded..d.kadffglnmyeWCgkssfktsGydertkefenysiPlflseyGCnkvtprkftevealyseemtsvfsGGlvyeysee 283
                     + l++yl+C+d++  d ++df+g+n+y+WCg++++++sGyd+ ++++e+ys P+++se+GCnkv prkf+e+ alyse+m++vfsGGlvye+++e
      CCD26166.2 207 IPLSKYLECEDTArkDcSVDFYGVNSYQWCGQQTLESSGYDRLVEAYEKYSKPVIFSEFGCNKVLPRKFDEITALYSESMNDVFSGGLVYEFTQE 301
                     ***********9855369***************************************************************************** PP

                     SSS--SEEE-TTS-EEE-THHHHHHHHHH CS
  Glyco_hydro_72 284 annyGlvkiddddvkkllkdfenlkseyk 312
                      nnyGl ++ +++  +ll+d+ +l+++y+
      CCD26166.2 302 PNNYGLAEVVNENDIQLLDDYFTLRDHYR 330
                     *********9999999********99985 PP

>> Glyco_hydro_2_C  Glycosyl hydrolases family 2, TIM barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.4   3.1e-06     0.019      26     256 ..      56     312 ..      24     330 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 3.1e-06
                      BTTTBTS--HHHHHHHHHHHHHCT--EEEE.TTS-..-SHHHHHHHHHHT-EEEEE-S-B-TTSCCCCSHCT-CCCCTTTSGGGHHHHHHHHHH CS
  Glyco_hydro_2_C  26 adrrGraideellvkDlkllkqlniNavRt.sHYP..nqeevyelcDeyGlyvidEanlethglaqklgeiepsynvladnpewlkavldriee 116
                      +d +    d +l  +D+ l++ l+iN+vR  s  P  n+ + ++l   +G+y+i + n  +    q+l++ ep    ++ n  +lk+v  +i e
       CCD26166.2  56 NDEKDPLSDPDLCARDILLFQDLGINTVRIySINPdlNHDKCMTLLATAGIYLILDVN--SPLENQHLNRYEP---WTTYNTIYLKHVFSVIDE 144
                      55555556778889***************64788866799**************7655..4445555665544...456778899999999999 PP

                      HHHHHTT-TTEEEEEEEESS............CHHHHHHHHHHHHHHH-TTS..EEEEETC..............SSGGGTSSEEEECC....T CS
  Glyco_hydro_2_C 117 lverdkNHpsviiWSlgNEs............gagedikalaelikklDptR..lvhyegv..............aaareldviildiy....s 178
                       ++ +      +    gNE             +  + i ++ ++i  +  tR  +v y                   ++  ++ ++d y    +
       CCD26166.2 145 FLQYNNT----LGFFAGNEIvndkrsaqysppYIKKLIGDMRRYIDVH-STRriPVGYSAAddlkyriplskyleCEDTARKDCSVDFYgvnsY 233
                      8887654....4455677776666877744444444444555555444.444356777766889999999888863344444444454421112 PP

                      TTSSSTTCHHHHHHHHHHCHHHHSS-EEEEEESE-BST--TTHHHHHHCCCH..-CCCCCCCCCHCCHHHEEECETTEEE CS
  Glyco_hydro_2_C 179 rmyekvglleelekelenekkklqkPlilcEYghamgnslGglqeytelfkk..yeeyQggfiweyidqaiqkrdeavgg 256
                      ++  ++ l  +  + l + ++k+ kP+i +E+g + +  +  + e t l+++  ++ + gg++ e++++  +    +v++
       CCD26166.2 234 QWCGQQTLESSGYDRLVEAYEKYSKPVIFSEFGCNKVL-PRKFDEITALYSEsmNDVFSGGLVYEFTQEPNNYGLAEVVN 312
                      33333233333445555668999999999999998877.66777777766531146788888888887766655555555 PP

>> Glyco_hydro_cc  Glycosyl hydrolase catalytic core
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.8e-07    0.0053     132     188 ..     215     280 ..     204     293 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 8.8e-07
  Glyco_hydro_cc 132 cs....kdckvdflavHwY....kgd.feelkehieelheaynkpiWvTEfalqsesgdasqeetk 188
                     c+    kdc+vdf+ v  Y    +++  +   +++ e++e+y+kp+   Ef+++++ +++ +e t+
      CCD26166.2 215 CEdtarKDCSVDFYGVNSYqwcgQQTlESSGYDRLVEAYEKYSKPVIFSEFGCNKVLPRKFDEITA 280
                     5556679************75553332333346788888**************9966666555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3722.44
//
Query:       CCD26167.2  [L=233]
Description: hypothetical protein NDAI_0G03900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.20s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 1984.15
//
Query:       CCD26168.2  [L=181]
Description: hypothetical protein NDAI_0G03910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-72  241.2   2.6    4.4e-72  241.0   2.6    1.0  1  UPF0220   Uncharacterised protein family (UPF0220)


Domain annotation for each model (and alignments):
>> UPF0220  Uncharacterised protein family (UPF0220)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.0   2.6   2.5e-76   4.4e-72       2     166 .]       6     175 ..       5     175 .. 0.98

  Alignments for each domain:
  == domain 1  score: 241.0 bits;  conditional E-value: 2.5e-76
     UPF0220   2 edrlfrfrkpklklensakrravgvylaGaLfalgfwlliDaaivskkanasdvhvtfvdwipgicstlgmlivnsieksrlsgdslgqsg........ 92 
                 +drlfr+  p +kl++ +  r++gvyl+G+++algfw+++Da+++sk +nasdvhvtf+dwip++cst+gmlivnsiek+rl++++l+++g        
  CCD26168.2   6 NDRLFRL--P-FKLPTFHGIRTFGVYLSGIFYALGFWVFLDAVLYSKYSNASDVHVTFIDWIPFLCSTFGMLIVNSIEKNRLLQGALNSEGgssfgdvd 101
                 689***8..7.99*************************************************************************8888889999999 PP

     UPF0220  93 ssvawkarvvLflGfallagglagslvvlilkYvvkdytefptlgmGvanvlqNllimlssvvlwvsqnvedeY 166
                 s++aw+ar vLf+Gfallaggl+gs+vvli+k++vkdyt++pt+gmGv+nvl N++i+ls+vvlw++qn+edeY
  CCD26168.2 102 SNMAWQARSVLFCGFALLAGGLSGSIVVLIIKFLVKDYTSYPTVGMGVNNVLGNIFILLSCVVLWIAQNMEDEY 175
                 *************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       471  (0.0262703); expected 358.6 (0.02)
Passed bias filter:                      217  (0.0121033); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1453.54
//
Query:       CCD26169.2  [L=374]
Description: hypothetical protein NDAI_0G03920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.6e-58  195.9   0.0    9.1e-58  195.7   0.0    1.1  1  Pkinase         Protein kinase domain
    1.3e-29  103.2   0.0    1.8e-29  102.9   0.0    1.1  1  Pkinase_Tyr     Protein tyrosine kinase
    6.2e-07   29.0   0.0    9.7e-07   28.4   0.0    1.2  1  Kinase-like     Kinase-like
    0.00068   19.6   0.0     0.0011   18.9   0.0    1.3  1  APH             Phosphotransferase enzyme family
      0.003   16.9   0.1     0.0042   16.5   0.1    1.2  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.016   14.8   0.0      0.025   14.2   0.0    1.2  1  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.7   0.0     3e-61   9.1e-58       2     264 .]      35     326 ..      34     326 .. 0.90

  Alignments for each domain:
  == domain 1  score: 195.7 bits;  conditional E-value: 3e-61
                 EEEEEEEEESSEEEEEEEETTTTEE....EEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE......SSEEEEEEE--TTEB...HHH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgki....vAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee......kdelylvleyvegge...lad 87 
                 ++ +k+G+G+fG+V++a+ + +++     +A+Kk+  + + k       rE++il+ ++hpn+v+l ++f++      k + +l +e+++++    + +
  CCD26169.2  35 QEYRKIGRGAFGTVVQAYITPNKENwygpFAIKKVPAQTEYK------SRELEILRITNHPNVVKLEYFFTHvspqdhKVYQHLAMECLPETLqieISR 127
                 5789************99665555322228999999987776......479********************999996555666*******875343555 PP

                 HHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHH CS
     Pkinase  88 llerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslG 184
                 + ++k  l+ +++k + +qi++g+ ylH+ gi+HrD+Kp+NiL+d ++g+lKi+DFG ak+le +++  s+++++ Y+APE++ + ++y++kvD+W+lG
  CCD26169.2 128 YAHNKLELALKHVKLYSYQIARGMLYLHALGICHRDIKPSNILVDpSTGVLKICDFGSAKRLEPNQPSISYICSRFYRAPELIlGCTQYTTKVDIWGLG 226
                 5558888****************************************************************************999************* PP

                 HHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS...........................-HHHHHHHHHHT-SSGCCSTTHH CS
     Pkinase 185 vilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei...........................seeakdllkkllkkdpkkRltae 256
                 +++ e+l+gk +f+   g++     l ql +i+k+lg+ ++k+   s+                             ++ +dll+k+l + p+ Rl+ +
  CCD26169.2 227 CVIGEMLMGKAIFQ---GQD----PLLQLREIAKLLGPPDKKFIFFSNPgydgplyskplfsgtskerfekyfghaGPDGIDLLTKVLVYSPEIRLSPR 318
                 **************...544....6777788******98999999998899************************************************ PP

                 HHHTSGGG CS
     Pkinase 257 ellqhpyl 264
                  +l+h+++
  CCD26169.2 319 RILNHSFF 326
                 ******98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.0   5.9e-33   1.8e-29       3     208 ..      36     241 ..      34     254 .. 0.87

  Alignments for each domain:
  == domain 1  score: 102.9 bits;  conditional E-value: 5.9e-33
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSS.EEEEEE--TTEBHHHHHHHT.... CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvctkeep.llivteyvkgGdLlkfLrkk.... 95 
                    +k+G+GafG+Vv+++++ +ke+     a+K++ ++++ +      +e++i++ ++hpn+vkl  + t+ +p    v + ++  +L + L+ +    
   CCD26169.2  36 EYRKIGRGAFGTVVQAYITPNKENWYGPFAIKKVPAQTEYK-----SRELEILRITNHPNVVKLEYFFTHVSPqDHKVYQHLAMECLPETLQIEisry 128
                  6799******************************8777776.....79*********************55543667888899999999999888888 PP

                  ..CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE.TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEHHHHHH CS
  Pkinase_Tyr  96 ..ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse.nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.ftsksDvW 189
                    +k +l lk++  +++q+A+Gm yL++  + Hrd+   N+L++  + v ki+DfG a+++   +  + + +  ++  + apE +  ++ +t+k D+W
   CCD26169.2 129 ahNKLELALKHVKLYSYQIARGMLYLHALGICHRDIKPSNILVDPsTGVLKICDFGSAKRL---EPNQPSISYICSRFYRAPELILGCTqYTTKVDIW 223
                  888999*************************************9626699***********...4455666777888899****998766******** PP

                  HHHHHHHHHHTTSSGTTTT CS
  Pkinase_Tyr 190 sfGvllwEiftlgespypg 208
                    G ++ E++  g+  ++g
   CCD26169.2 224 GLGCVIGEMLM-GKAIFQG 241
                  ********998.7766665 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   3.2e-10   9.7e-07     123     243 ..     113     232 ..     106     247 .. 0.85

  Alignments for each domain:
  == domain 1  score: 28.4 bits;  conditional E-value: 3.2e-10
  Kinase-like 123 dleilnkvlqkrset..hkkletiarl..llTlqlirlaanLqakglvhgkftvdnllldekgg.lmlggftaLvragtkvvl.seve.kgfaPpEll 213
                   +e l ++lq++ ++  h+kle + ++  l   q+ r   +L+a+g+ h ++++ n+l d+  g l++ +f++  r   + +  s ++ + +  pEl+
   CCD26169.2 113 AMECLPETLQIEISRyaHNKLELALKHvkLYSYQIARGMLYLHALGICHRDIKPSNILVDPSTGvLKICDFGSAKRLEPNQPSiSYICsRFYRAPELI 210
                  578999999999999999999988776224578999************************9765269*********999998768888788999**99 PP

  Kinase-like 214 gsrggytrknktkmthkldaWqlGlviyri 243
                             t++t k+d W+lG vi  +
   CCD26169.2 211 LG--------CTQYTTKVDIWGLGCVIGEM 232
                  76........589*************9665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.7e-07    0.0011     144     196 ..     121     186 ..      94     188 .. 0.72

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 3.7e-07
                 HHHHHHHHHHHHHHHH--S..............SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH 144 lleeleeqvlaalaallpg..............elptvllHgDlhpgNllvdpddgrvtGviDfeda 196
                 l++e+ + + ++l+  l                  + +++H+D++p N+lvdp  g +  + Df+ a
  CCD26169.2 121 LQIEISRYAHNKLELALKHvklysyqiargmlyLHALGICHRDIKPSNILVDPSTGVL-KICDFGSA 186
                 5555555555555555555666666677777778899***************887777.67787765 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   1.4e-06    0.0042     125     160 ..     145     179 ..      77     193 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.4e-06
         Kdo 125 kavgrliaklhragvnHadlyaknillqqeeeeeae 160
                  +++r +  lh++g++H+d+ + nil++    + ++
  CCD26169.2 145 YQIARGMLYLHALGICHRDIKPSNILVDPST-GVLK 179
                 58999999********************986.5544 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.0   8.3e-06     0.025     113     171 ..     119     183 ..      95     187 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 8.3e-06
                     HHGGCCHCCCTHHHHHHHHHTHHHHHHCHGG-......EEEE-S--SGGGEEE.-CTTEEEE--G CS
  Choline_kinase 113 ekkkkqlklinledlekelekleklleelesp......vvfcHnDlqegNillnkeekklvlIDF 171
                     e+ + +++    ++le  l++++ +  ++         +  cH D+ ++Nil++ +++ l + DF
      CCD26169.2 119 ETLQIEISRYAHNKLELALKHVKLYSYQIARGmlylhaLGICHRDIKPSNILVDPSTGVLKICDF 183
                     55555566666666666666666555444333444456999***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       346  (0.0192983); expected 358.6 (0.02)
Passed bias filter:                      332  (0.0185175); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2677.08
//
Query:       CCD26170.2  [L=70]
Description: hypothetical protein NDAI_0G03930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-14   52.4   3.3    3.3e-13   49.8   3.3    1.9  1  Ribosomal_L23  Ribosomal protein L23


Domain annotation for each model (and alignments):
>> Ribosomal_L23  Ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   3.3   1.9e-17   3.3e-13      15      78 ..       3      54 ..       1      63 [. 0.81

  Alignments for each domain:
  == domain 1  score: 49.8 bits;  conditional E-value: 1.9e-17
                   HHTT.E.EEEEE-SS-THHHHHHHHHHHHT--EEEEEEEEE--EBESSSSSEEBE--EEEEEEEE CS
  Ribosomal_L23 15 laek.nkyvFeVakdanKleikkaveklFgVkVekVntlnvkgkkkrvgrkvgrrksyKkaiVtL 78
                   + e+ n++vF+V++++nK++ikkav++l++V+V +Vntl++++ +k+             a+V+L
     CCD26170.2  3 KVEDgNTLVFQVSMKSNKYQIKKAVKELYEVDVLSVNTLVRPNGTKK-------------AYVRL 54
                   5566689*********************************9996665.............44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       706  (0.0393775); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 541.11
//
Query:       CCD26171.2  [L=376]
Description: hypothetical protein NDAI_0G03940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.5e-46  157.2   0.0    5.4e-46  156.6   0.0    1.3  1  Ldh_1_C         lactate/malate dehydrogenase, alpha/beta C-te
    1.7e-41  141.6   0.2    2.6e-41  141.0   0.2    1.3  1  Ldh_1_N         lactate/malate dehydrogenase, NAD binding dom
  ------ inclusion threshold ------
       0.13   12.7   0.0       0.82   10.1   0.0    2.2  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> Ldh_1_C  lactate/malate dehydrogenase, alpha/beta C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0   9.1e-50   5.4e-46       1     166 [.     182     372 ..     182     373 .. 0.96

  Alignments for each domain:
  == domain 1  score: 156.6 bits;  conditional E-value: 9.1e-50
                 THHHHHHHHHHHHH...HHTS-GGGE...E--EEBSSSTETTEEHHHHHTTSTTSTHHHHHHHHHHHHHHHHHHHHHHTTSSSS-HHHHHHHHH....H CS
     Ldh_1_C   1 TtLDivRaktflae...kagvtprsv...kvtViGgHsgvtiipllsqvkellklsekqleeliervqnggdevvkakkGagsatlsmAvAgak....f 89 
                 T+LDivRaktfl e    a++tprs+   +v+ViGgHsg+ti+pl+sq+   ++l+++ql++li+rvq+ggdevvkak+G gsatlsmA+Ag k    f
  CCD26171.2 182 TKLDIVRAKTFLHEvtiDADITPRSNdmpDVPVIGGHSGETIMPLFSQSRSYKSLDKDQLAYLIHRVQYGGDEVVKAKNGLGSATLSMAHAGFKvvnkF 280
                 9**********99998899*******9999***************************************************************988889 PP

                 HHHHHTTHTEEEEEEEEEESCCCECCS..............SEEEEEEEEEEETTEEEEE.-----.--HHHHHHHH.HHHHHHHHHHHHHHCC CS
     Ldh_1_C  90 veallrdtkeilsagvyldgevglkdq..............eieyfsvPvvlgknGvekv.leilk.lndfeeekle.ksvkeLkkeiekglef 166
                 v+ ll ++ ei  +g+   +  +++ +              ++ +fs+P++++k+Gv++v ++i+  ++d e++++   +  +Lkk++e+g +f
  CCD26171.2 281 VSLLLGNVSEI--HGICYVSLLDSEGHptamgmekllplidNCAFFSIPMTITKKGVTSVdYDIVDrMDDHERNEMLpLCLPKLKKSVETGSKF 372
                 99999999999..99998888888888999***********************************99*********99************9987 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.0   0.2   4.4e-45   2.6e-41       2     133 ..      15     167 ..      14     175 .. 0.91

  Alignments for each domain:
  == domain 1  score: 141.0 bits;  conditional E-value: 4.4e-45
                 EEEEETTTSHHHHHHHHHHHHT.TSSSE............EEEE-SSHHHHHHHHHHHHHCHCCSTS-EEEEE.SSGGGGTTESEEEE--S-SS-TTTT CS
     Ldh_1_N   2 kvavvGaaGgiGqslalllank.klade............laLlDiakekleGvaldlshistflsvkvkvse.keeealkdadvvvitagvprkpGet 86 
                 k++++GaaGgiGqsl+lll+++ ++  +            laL+D+++++++Gv++dlshi+t++s++ ++++ + +++l ++++v+i+ag+prkpG++
  CCD26171.2  15 KISILGAAGGIGQSLSLLLKTQlHFPLKtnstqrdknhihLALYDVNEDAINGVVADLSHIDTPVSISNHSPAtGIKDCLMNSSLVIIPAGMPRKPGMN 113
                 9*********************9887777899*************************************99999************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHT..TTSEEEE-SSSHH....HHHHHHH.HHHT CS
     Ldh_1_N  87 RddLlkvNakIvkeiveaiakva..pnaivlvvsNPvd....iltevlk.kasg 133
                 R+dL+++NakI++++++ iak++  ++++vl++sNPv+    ++++ l+ k+ +
  CCD26171.2 114 REDLFNINAKIMSNLTDDIAKYCdlSKVFVLIISNPVNslvpVMVNRLWhKHQD 167
                 ***********************999************8877555444414444 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00014      0.82       1      27 [.      15      43 ..      15      78 .. 0.78
   2 ?   -0.8   0.0      0.33     2e+03      70     114 ..     322     363 ..     319     367 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00014
                    EEEEETTTSHHHHHHHHHHHC..TSSEEE CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLee..hpevel 27
                    k++i+Ga G +Gq l  lL++  h++++ 
      CCD26171.2 15 KISILGAAGGIGQSLSLLLKTqlHFPLKT 43
                    689******************66666554 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.33
                     EEE-SCHHHHHHHHHHHHHTTSEEEESSSTTTTSTTSEBE-HHHH CS
  Semialdhyde_dh  70 vflalpagvskelapklaeagvkviDlssdfRlkddavyvlpevn 114
                     +f++ p  ++k+ + ++   +  ++D   d+  ++  +++lp ++
      CCD26171.2 322 AFFSIPMTITKKGVTSV---DYDIVDRMDDHERNEMLPLCLPKLK 363
                     67777777777666666...6667777777777779999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       360  (0.0200792); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2706.11
//
Query:       CCD26172.2  [L=458]
Description: hypothetical protein NDAI_0G03950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.4e-80  269.9   1.0    2.4e-80  269.9   1.0    1.9  2  TRM13          Methyltransferase TRM13
      5e-11   42.3   7.4      1e-10   41.3   2.5    2.5  2  zf-U11-48K     U11-48K-like CHHC zinc finger
    4.4e-09   35.9   3.1    4.4e-09   35.9   3.1    2.2  2  zf-TRM13_CCCH  CCCH zinc finger in TRM13 protein


Domain annotation for each model (and alignments):
>> TRM13  Methyltransferase TRM13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   1.2      0.37   2.2e+03     174     203 ..      33      53 ..      12      83 .. 0.55
   2 !  269.9   1.0     4e-84   2.4e-80       1     261 [.     166     455 ..     166     456 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.37
       TRM13 174 avsgkrkseaeeedekeekekeekkeeees 203
                 av +++         ++++e++ +++e+++
  CCD26172.2  33 AVHNNN---------NNNNESKVHDNEKNN 53 
                 222222.........222222222222222 PP

  == domain 2  score: 269.9 bits;  conditional E-value: 4e-84
       TRM13   1 lqqsslignleelkllekssayvEfGaGkgelsryvnqaleed..........kkenskyvLidrasnrlkaDrklrkdese...............la 74 
                 +qqssli+++ ++k+++++ +++EfG+G++e+sryvnq++  +          + ++s++++idrasnr+k+D+k+ +d  e               + 
  CCD26172.2 166 IQQSSLIQHMIDKKMFRNNPNFIEFGSGRAEFSRYVNQVVLCEnnndidstdvEPQTSNFIFIDRASNRMKFDKKILDDYVEwisnknkksgekmnvPD 264
                 69************************************765555789*****999************************9999**************** PP

       TRM13  75 ikRlkidIkdLnlsaleelekkkkvvavsKHLCGaATDLtLrcllnsekask.....kakleglliAlCChhvCswkeyvn........keyleelgit 160
                 ikR+kidI+dL+l+ l++  +++++va+sKHLCG+ATDLtL+c+ ns+  +       ++++g++iA+CC+hvC++++yvn        ++y +++ +t
  CCD26172.2 265 IKRVKIDIRDLKLDPLLSFPNNNNYVAISKHLCGVATDLTLKCIQNSDILTGkdlssPSNFDGICIAMCCRHVCNSNDYVNpvfvnsllEKYGHDETFT 363
                 ******************88**************************9877656777799**************************99999999999*** PP

       TRM13 161 ke.efqiltkmvSWavsgkrkseaeeedekeekekeekkeeeeseeekksklsseereeiGlkakrlidegRllalkek.....gfeaelvkYvekevs 253
                 ++ +f+ l+km+SWa++g+r+      d         +++++  + ++ ++++ +ere+ Gl a+r+idegR +++k++     +f +elvkYv+++vs
  CCD26172.2 364 YDqFFYSLQKMCSWATCGRRD------D---------MNDHDVVRITDDKSITLKEREQFGLLARRIIDEGRKNWVKKNlnnanDFTVELVKYVHSDVS 447
                 **99****************1......1.........1222223334445689*************************9999999************** PP

       TRM13 254 lEnvlLla 261
                 lEn++Ll+
  CCD26172.2 448 LENIVLLV 455
                 ******97 PP

>> zf-U11-48K  U11-48K-like CHHC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   2.5   1.7e-14     1e-10       1      25 []      56      80 ..      56      80 .. 0.97
   2 ?    3.2   0.2     0.015        87       7      22 ..     161     176 ..     161     177 .. 0.95

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.7e-14
  zf-U11-48K  1 lvpCPyNpsHrvpesrLqkHlkkCp 25
                ++pCP++p+H+v +s+L+kHlkkC+
  CCD26172.2 56 RIPCPLDPNHTVKKSQLEKHLKKCN 80
                79**********************8 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.015
  zf-U11-48K   7 NpsHrvpesrLqkHlk 22 
                 N++H +++s L +H++
  CCD26172.2 161 NKKHAIQQSSLIQHMI 176
                 99************97 PP

>> zf-TRM13_CCCH  CCCH zinc finger in TRM13 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   3.1   7.4e-13   4.4e-09       7      29 .]       1      23 [.       1      23 [. 0.95
   2 ?   -2.3   0.8      0.69   4.1e+03       6      12 ..     248     254 ..     248     255 .. 0.89

  Alignments for each domain:
  == domain 1  score: 35.9 bits;  conditional E-value: 7.4e-13
  zf-TRM13_CCCH  7 ipnKkRfCkmtrkkgsryCgeHl 29
                   +++K+R+C+mtr++g++yC+eHl
     CCD26172.2  1 MEKKRRRCGMTRRNGEQYCTEHL 23
                   68********************6 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.69
  zf-TRM13_CCCH   6 fipnKkR 12 
                    +i nK++
     CCD26172.2 248 WISNKNK 254
                    9****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1187  (0.0662056); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3243.15
//
Query:       CCD26173.2  [L=444]
Description: hypothetical protein NDAI_0G03960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-10   38.8   0.0    2.5e-08   33.8   0.0    2.3  1  UPF0020      Putative RNA methylase family UPF0020
     0.0067   16.2   0.8       0.28   10.9   0.6    2.6  2  N6_N4_Mtase  DNA methylase


Domain annotation for each model (and alignments):
>> UPF0020  Putative RNA methylase family UPF0020
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   2.8e-12   2.5e-08       3     134 ..     195     308 ..     194     314 .. 0.79

  Alignments for each domain:
  == domain 1  score: 33.8 bits;  conditional E-value: 2.8e-12
                 SS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHH..HHHHHHHHT CS
     UPF0020   3 yRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvq..gareNaeka 99 
                 +R+++g ++  ++L+ +  ++a++kpg+ ++DP+ G+G++l  ++  ga ++                          gsD+d r+++  ga +N  + 
  CCD26173.2 195 KRPYKGTTSFEAELSLVSANIAQVKPGTIMYDPFAGTGSFLTAGGHYGALVI--------------------------GSDIDGRMIRgkGASQNIGAN 267
                 79**********************************************9999..........................*********733588886543 PP

                 .....T-GGGEEEEE--GGG--....STTS---EEEE------- CS
     UPF0020 100 .....gvgdliefsqadaakLr....lkegevdvivtnpPYGer 134
                      + + + ++ ++d+   +    +++  +d+i+++pPYG+r
  CCD26173.2 268 fkyyeESSRFLDVLTMDF---ThnslRSNLCIDTILCDPPYGIR 308
                 110112333444445554...2333447779***********99 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.6   3.1e-05      0.28      29     223 ..      13     252 ..       6     257 .. 0.62
   2 ?    2.6   0.0      0.01        90       1      15 [.     296     310 ..     296     412 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.1e-05
                  HHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCCHHT......HHHHHHHHHTT.-EEEEEEEEEEESSSTTTSTCCS-B--EEEEEEEESSTT-..--- CS
  N6_N4_Mtase  29 eeyleflekvlkevrrvLkddgsifiniddseikk......elkaladeifg.gffllnvivwkkpnsmpesnkdrltsthEyilvfsknkkyllkfn 119
                  ++yl f+++v  + rr   ++   + ni+d+++ k      +++  +d+++  + +++  i  +   +++    + ++  hE i   s   +y++ + 
   CCD26173.2  13 KKYLVFMVQVHTNFRRAELESLADLYNIKDINFDKyddnspFFFVELDNDQQaKDWIKRSILTRAIYEYWGEG-KTYDGLHESIQSQSFFPEYKKLYE 109
                  5666666666666666666666666777777777777777733333344444445555555555554444433.478888888877444444444677 PP

                  GGGSSBSS-HHHHHHHHHH...........CHHHCC-B--BSEE...............................E-SCCCTTSTTS-CHH...---- CS
  N6_N4_Mtase 120 ldaikvpyeekdklekrga...........ytskkkgkkiediW...............................dlseiqsnekkskgdt...kkkH 172
                   d +k +++++++++k+++            ++k + k+ ++i+                               +       ek     +   k+ +
   CCD26173.2 110 NDSFKFEFDTYRGNSKSNRikqietfsyleFKGKIDMKNPNQIFtvieeykpisenipakepinlifgrliqkgdR----LAMEK-----YdlkKRPY 198
                  7888888888888888888888888888887777777777777766666666666666666666665666643331....22222.....13333444 PP

                  SS---HHHHHHHHH...HHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH CS
  N6_N4_Mtase 173 paqkPvallerlIk...lstkkgdivlDpFaGSGtTavaakelgrkfiGieiee 223
                  + +   +    l+    +  k+g i  DpFaG+G+ ++a    g   iG +i+ 
   CCD26173.2 199 KGTTSFEAELSLVSaniAQVKPGTIMYDPFAGTGSFLTAGGHYGALVIGSDIDG 252
                  4444433333444300134678***************99999999999988875 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.01
                  EEEEEE--SSSSSCS CS
  N6_N4_Mtase   1 vdlivtdpPYntgkd 15 
                  +d+i+ dpPY++ ++
   CCD26173.2 296 IDTILCDPPYGIRES 310
                  799*******99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       332  (0.0185175); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3276.78
//
Query:       CCD26174.2  [L=607]
Description: hypothetical protein NDAI_0G03970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      4e-32  109.8   0.6    1.7e-15   56.6   0.0    2.5  2  RRM_1          RNA recognition motif. (a.k.a. RRM, RBD, or RN
    1.3e-12   47.6   0.2    2.1e-06   27.8   0.0    2.8  2  RRM_7          RNA recognition motif
  ------ inclusion threshold ------
      0.033   14.8   8.1       0.13   12.9   8.1    2.0  1  PRP38_assoc    Pre-mRNA-splicing factor 38-associated hydroph
      0.053   13.4   0.2        0.1   12.4   0.2    1.4  1  Glyco_H_20C_C  Glycoside Hydrolase 20C C-terminal domain
       0.62   10.5   1.8        1.3    9.4   1.8    1.5  1  DUF4199        Protein of unknown function (DUF4199)


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   4.7e-19   1.7e-15       2      60 ..     200     257 ..     199     267 .. 0.91
   2 !   51.2   0.2   2.3e-17   8.3e-14       1      69 [.     283     351 ..     283     352 .. 0.93

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 4.7e-19
                 EEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHT CS
       RRM_1   2 fVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealn 60 
                 f+g+L++++te+ L+ +F+k+G + ++k+++d +tg+s+gf+f +Fe +++ ++ ++   
  CCD26174.2 200 FIGGLNWETTEDGLRNYFNKYGNVIELKIMKDgATGRSRGFGFLTFEHPSSVDEVVK--T 257
                 9***************************************************99998..3 PP

  == domain 2  score: 51.2 bits;  conditional E-value: 2.3e-17
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTT.EEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealng.kklggrel 69 
                 +fVg++ +dv  +e +e+F +fG i +++l+ d  tg+s+gf+f++++s ++ +k  +  n+   ++g+++
  CCD26174.2 283 IFVGGIGTDVRPKEFEEFFAQFGTIIDAQLMLDkDTGRSRGFGFITYDSADAVDKVCQ--NKyIDFKGKQI 351
                 8******************************************************999..66577777766 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   5.7e-10   2.1e-06       1      69 [.     196     257 ..     196     266 .. 0.80
   2 !   16.9   0.1   1.5e-06    0.0052       3      70 ..     282     342 ..     280     362 .. 0.76

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 5.7e-10
       RRM_7   1 srkvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLlea 69 
                 s+k+F+GGl ++ te+ l + f+++g+v ++    +  + +        +g+ fl fe+ +sv ++++ 
  CCD26174.2 196 SCKMFIGGLNWETTEDGLRNYFNKYGNV-IELKIMKDGA-T----G-RSRGFGFLTFEHPSSVDEVVKT 257
                 8*************************97.5653332222.2....2.247**************99976 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.5e-06
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaaenskaakgyvflvfedeksvkaLleac 70 
                 k+FvGG+ +D+  +e ++ f +fg++ +d      +++         +g+ f+ +++ ++v ++ ++ 
  CCD26174.2 282 KIFVGGIGTDVRPKEFEEFFAQFGTI-IDAQLMLDKDT-----G-RSRGFGFITYDSADAVDKVCQNK 342
                 9***********************87.55333322222.....2.24699999999999999887765 PP

>> PRP38_assoc  Pre-mRNA-splicing factor 38-associated hydrophilic C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   8.1   3.5e-05      0.13      40      97 ..     532     576 ..     507     595 .. 0.49

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.5e-05
  PRP38_assoc  40 rsrrrsstrarsrsrersrerdrrsrstrdrdrardRdrrrskeerrrsrdrsrsrdr 97 
                  r+++++ t         ++++ r++++ + +++ rdR + r     + +rdr+r+r r
   CCD26174.2 532 RDPTATATI--------HHQYQRNNDRGHYYSNGRDRKYGR-----DEDRDRDRDRGR 576
                  333333331........333333333335555555555542.....222222222222 PP

>> Glyco_H_20C_C  Glycoside Hydrolase 20C C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   2.9e-05       0.1      30      81 ..     391     441 ..     382     444 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.9e-05
  Glyco_H_20C_C  30 LYqDpLlglfdkqvagldlekhYeklaekleelaekskelnelfelykkLak 81 
                    +Yq+p+++ f++ +++  ++++Y++++  ++++++ ++ +++  ++++++a 
     CCD26174.2 391 MYQNPMMPGFNPMFNPQAMTDYYQRMQDYYKQMQA-QTGIDYSQMYQQQMAM 441
                    7*******************************999.8888888888888875 PP

>> DUF4199  Protein of unknown function (DUF4199)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.8   0.00037       1.3      94     135 ..     403     443 ..     399     463 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00037
     DUF4199  94 fidpdfienyiaeilekleeakeesaeeenaemseeeikeal 135
                  ++p+++++y++ +++++++++++++    ++m+++++++++
  CCD26174.2 403 MFNPQAMTDYYQRMQDYYKQMQAQTGI-DYSQMYQQQMAMMM 443
                 569****************99888875.66678888886544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1786  (0.0996151); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.69u 0.28s 00:00:00.97 Elapsed: 00:00:00.45
# Mc/sec: 4024.78
//
Query:       CCD26175.2  [L=570]
Description: hypothetical protein NDAI_0G03980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-86  290.7  19.7    1.4e-86  290.7  19.7    2.2  2  Nramp     Natural resistance-associated macrophage protein


Domain annotation for each model (and alignments):
>> Nramp  Natural resistance-associated macrophage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.7  19.7     8e-91   1.4e-86       3     353 ..      96     487 ..      94     492 .. 0.92
   2 ?   -4.7   0.7      0.49   8.9e+03      95     107 ..     539     551 ..     534     559 .. 0.47

  Alignments for each domain:
  == domain 1  score: 290.7 bits;  conditional E-value: 8e-91
       Nramp   3 tdlqaGaqfGykLlwvlllstllaillqelsarLGlvTgkglaelirerlpkkvsillwilaelaiiatdlaeviGaAialnllfgipllvgvlitavl 101
                 t+++aGa+  ++Ll ++lls+++ai+lq l+++LG vTg +l++++r +lpk++++++++ ae aiiatd+aeviG+Aialn+l+++pl +gv it+++
  CCD26175.2  96 TAVSAGASNQFSLLCIILLSNFIAIFLQLLCIKLGTVTGLDLSRACRMHLPKWMNYIIYFFAECAIIATDIAEVIGTAIALNILIKVPLPAGVAITVAD 194
                 899************************************************************************************************ PP

       Nramp 102 vllllflekgg......yrklEaliialvlvialsFiaelflvkpdw..gevlkglvvPslpg..keslllavgilGatvmphnlflhsslvqerkiti 190
                 v++++f  k g      +r +E  +++lv+ ++++F +el+ ++ ++  ++v++g+v Ps +   ++ +++a++ilGatvmph lfl s lvq r  + 
  CCD26175.2 195 VFIIMFTYKPGssslrfVRYFEYGVAVLVIGVCICFSIELAYIPKSTsvRKVFRGFV-PSSQMfqHNGMYTAISILGATVMPHSLFLGSGLVQPRLLDY 292
                 ******754221223338999*********************98654339*****99.**99999*******************************988 PP

       Nramp 191 dr..............................seke....ealkyeriDtiial.ivaflinlailivaAavly.sggkdvesledaaeaLepllGska 253
                 d                               +         +ky+ ++ ++ l ++a+++n++ili+a a+ly + g++ ++l+ ++++L++ l  +a
  CCD26175.2 293 DVqhgnyslvddnnekknkeefldkryfnyrpT--LdairYCMKYSMVELALTLfTMALFVNCSILIIAGATLYdTPGASDADLFVIHDLLSKTLA-PA 388
                 7799*********99988888777766665542..0345567889999999999889*****************9888899***************.7* PP

       Nramp 254 asvlFaigLlaaGlsStitgtlagqyvmegflglrislwlrrlitralafvpalivilligaelelvkllvlsqvllslllPfaliplllltsskklMG 352
                 a ++F+++Ll +G+s+ i++t+agq+v eg +++++ +w+rrl+tr+++++p l++ ++ig+e    k+l +sqv+ls++lPf+++pl+++t +k++M+
  CCD26175.2 389 AGTIFMLALLLSGQSAGIVCTMAGQIVSEGHIDWKLIPWQRRLVTRSISMIPCLFISIFIGKEAM-SKALNASQVVLSIVLPFLVAPLIYFTCNKSIMK 486
                 ***************************************************************99.********************************8 PP

       Nramp 353 e 353
                  
  CCD26175.2 487 T 487
                 5 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 0.49
       Nramp  95 vlitavlvllllf 107
                 ++i++v+++l+l 
  CCD26175.2 539 ITIIGVIIWLFLS 551
                 3444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.40
# Mc/sec: 4228.01
//
Query:       CCD26176.2  [L=144]
Description: hypothetical protein NDAI_0G03990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-53  180.6   0.1    1.3e-53  180.4   0.1    1.0  1  Ribosomal_S19e  Ribosomal protein S19e


Domain annotation for each model (and alignments):
>> Ribosomal_S19e  Ribosomal protein S19e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.4   0.1     7e-58   1.3e-53       1     136 [.       5     141 ..       5     142 .. 0.97

  Alignments for each domain:
  == domain 1  score: 180.4 bits;  conditional E-value: 7e-58
                     TSSSHHHHHHHHHS--S---S-SSS-SSSS-SS-S-SS-SSTTTHHH.HHHHHHHHTS--TTSGGGGS----SS-SSS-------THHHHHHHHH CS
  Ribosomal_S19e   1 tvkdVpaeelikalaeeLkksgklevPewadlvKtgsakelapeded.WfyvRaAsilRkvylrgpvGverlrkvYGgkkrrgvrpshfvkasgs 94 
                     +v+dV a+++i+a+a++L+++gklevP  +d+vKt+s++e++p+d++ Wfy RaAs++R++ylr++vGv++l+k YGg+k rgvrp+++ +asgs
      CCD26176.2   5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDSEgWFYKRAASVARHIYLRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGS 99 
                     599******************************************666*********************************************** PP

                     TTSSS--SSS---SS-HHHHHTHHHHH--SS--S--XXXXXX CS
  Ribosomal_S19e  95 virkilqqLeklglvkkekkkgrrltkkGqrlldriaeevak 136
                     v+rk+lq+Lek+g+v+ + k+grr++++Gqr+ldria+++++
      CCD26176.2 100 VNRKVLQALEKIGVVEISPKGGRRISENGQRDLDRIAAQTLE 141
                     ***************888888*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       362  (0.0201908); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1111.53
//
Query:       CCD26177.2  [L=186]
Description: hypothetical protein NDAI_0G04000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-87  291.3   2.1    2.5e-87  291.1   2.1    1.0  1  Ribosomal_L18   Ribosomal protein 60S L18 and 50S L18e
     0.0019   18.9   0.2     0.0048   17.6   0.2    1.8  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27


Domain annotation for each model (and alignments):
>> Ribosomal_L18  Ribosomal protein 60S L18 and 50S L18e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.1   2.1   2.8e-91   2.5e-87       1     187 []       2     186 .]       2     186 .] 0.98

  Alignments for each domain:
  == domain 1  score: 291.1 bits;  conditional E-value: 2.8e-91
  Ribosomal_L18   1 gidlkekkk.kkskrkapksenvylklLvklyrfLarRtdskFnkvvlkrLfmsrinrpplslsrlvkkvkkkeeekkiavvvgtvtdDvrllevP 95 
                    gid+++k++ ++ +r+apks+nvylk+Lvkly fLarRtd+ Fnkvvlk Lfms+inrpp+s+sr+++ +k++++++k++vvvgtvtdD+r++e+P
     CCD26177.2   2 GIDHTSKQHkRSGHRTAPKSDNVYLKMLVKLYSFLARRTDAPFNKVVLKSLFMSKINRPPVSVSRIARGLKQEGSANKTIVVVGTVTDDARVFELP 97 
                    7999988776999*********************************************************************************** PP

  Ribosomal_L18  96 klsvaALrftetararilkaGGeiltlDqLalraPtGkntvLlrGkkkareavkhfgaapgvphshkkpyvrskgrkfekargrrksrgfkv 187
                    k +vaALrft+ arari+kaGGe++tlDqLa+raP+G+nt++lrG++++reav+hfg+   +ph++k p++ skgrkfe++rg+r+s gfkv
     CCD26177.2  98 KTTVAALRFTAGARARIIKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGM---GPHKNKAPRILSKGRKFERGRGKRRSLGFKV 186
                    *********************************************************9...*****************************96 PP

>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   5.3e-07    0.0048      72     127 ..      59     122 ..       4     123 .. 0.59

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 5.3e-07
                     --EEEGGGTTTTSSS.......SEEEE--S....--.-..--EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  72 aeeidleelaeaglikk...kdgvKvlgkg....el.tk.klkvkaskfSkkAkekIeaaGGkve 127
                     +++++++++ ++gl ++   ++ + v+g+     ++ +  k +v a +f++ A+++I +aGG+++
      CCD26177.2  59 RPPVSVSRI-ARGLKQEgsaNKTIVVVGTVtddaRVfELpKTTVAALRFTAGARARIIKAGGECI 122
                     344555555.33333336664444555553334444233359*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1442.10
//
Query:       CCD26178.2  [L=627]
Description: hypothetical protein NDAI_0G04010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.055   13.5   1.4       0.43   10.6   0.1    2.8  2  IL15      Interleukin 15


Domain annotation for each model (and alignments):
>> IL15  Interleukin 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   2.4e-05      0.43      26      96 ..     231     297 ..     224     304 .. 0.73
   2 ?    0.2   0.1      0.04   7.2e+02      86     115 ..     520     549 ..     515     559 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 2.4e-05
        IL15  26 kDLeileelinsihldatLYtesdvkpeCkvqalkCfllElrvileeeiekee.eikeevenliknanknlk 96 
                 +DL  l  +i+ i+ ++  Yte d k+e ++  l+C++lE+   l+   +ke+   ke++  l k+a k+l+
  CCD26178.2 231 SDLSSLR-SIRVIDNETEKYTE-DLKIEITTVILQCYILEF---LKAGDIKEAgYFKESISILDKLASKSLS 297
                 5888887.88999999999*98.7889*************9...5544444440445555544455666655 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.04
        IL15  86 nliknanknlkslkdeskteseCkeCEele 115
                 +l++ ++++++ +++++    e keCE l 
  CCD26178.2 520 QLTMYGKESFRLMNQNKRKPAEAKECESLA 549
                 567778889998888999999******864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       667  (0.0372023); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4437.30
//
Query:       CCD26179.2  [L=393]
Description: hypothetical protein NDAI_0G04020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-23   80.9   0.2    1.3e-22   79.8   0.2    1.6  1  GCR1_C    Transcriptional activator of glycolytic enzymes


Domain annotation for each model (and alignments):
>> GCR1_C  Transcriptional activator of glycolytic enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.2   7.5e-27   1.3e-22       1      80 []     285     363 ..     285     363 .. 0.99

  Alignments for each domain:
  == domain 1  score: 79.8 bits;  conditional E-value: 7.5e-27
      GCR1_C   1 fklsreiktVedlwnEykeglngkpsikslekkygkrWrkdskesklfsrRkkiidfierlieeegitreeavkileelR 80 
                 f++ +++++V dlw+Ey+eg++g+psik+++  y+++Wr+d+  ++ +srRk+++++ie ++e+ g++ e++v+ile++R
  CCD26179.2 285 FEFLKSPNSVLDLWKEYTEGIHGHPSIKYMDAIYQTNWRRDAAVNRRYSRRKVLWKAIESGLEK-GYSLERVVDILENCR 363
                 8899************************************************************.*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1087  (0.060628); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2830.18
//
Query:       CCD26180.2  [L=582]
Description: hypothetical protein NDAI_0G04030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      6e-17   61.7   0.7    1.7e-16   60.3   0.0    2.2  2  NTP_transf_2  Nucleotidyltransferase domain
      7e-14   51.8   0.0    1.9e-13   50.4   0.0    1.8  1  PAP_assoc     Cid1 family poly A polymerase
     0.0011   18.9   0.1     0.0034   17.4   0.1    1.8  1  Polbeta       Polymerase beta, Nucleotidyltransferase


Domain annotation for each model (and alignments):
>> NTP_transf_2  Nucleotidyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   2.8e-20   1.7e-16       3      93 ..     196     306 ..     194     308 .. 0.93
   2 ?   -2.7   0.1       1.3   7.5e+03      73      73 ..     504     504 ..     470     541 .. 0.56

  Alignments for each domain:
  == domain 1  score: 60.3 bits;  conditional E-value: 2.8e-20
                   HHHHHHHHHTTTSEEEEEHHHHCTTSCTTSSEEEEEEESTTCHHH..................HHHEHHHHHHHHCCCEEECTTEEEEEECEEECCC CS
  NTP_transf_2   3 klleelkelepvakvvlfGSyarGtalkgSDiDllvvlpeevsre..................kkeegleklaeiikfleellglevdlvtrekled 81 
                   ++++++   + +a +++fGSya++++l+gSDiD+++++++  +++                  + e++++++++iikf+++  ++++d++++ + + 
    CCD26180.2 196 RIRDAVNHFWNDANLHVFGSYATDLYLPGSDIDCVIISEKGDKDSrsslyalanflkkrglatDIEVIAKARVPIIKFIDPRSKIHIDVSFERINGL 292
                   899**************************************8877******************9999***********************8888777 PP

                   ..CTEEEEEECEEE CS
  NTP_transf_2  82 ..pllvksileerp 93 
                      +l++++l+++p
    CCD26180.2 293 eaAKLIREWLNDTP 306
                   77999999999886 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.3
                   E CS
  NTP_transf_2  73 l 73 
                   +
    CCD26180.2 504 V 504
                   1 PP

>> PAP_assoc  Cid1 family poly A polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   3.1e-17   1.9e-13       1      62 []     361     421 ..     361     421 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 3.1e-17
                 -HHHHHHHHHHHHHHT--TTTEEEECSST-E..EEHHHHCGCS-SSEECESSSSEBEETTCCCC CS
   PAP_assoc   1 sLGeLLigFFeyYgreFdyenvvisirtggi..ltkkekgwesaeskernrfllaIeDPfeldn 62 
                 +LG+LL++FFe+Yg++F y++ +i++ +g    l+k++++ +   ++ r++f laI+DP + +n
  CCD26180.2 361 NLGVLLVEFFELYGKNFGYDDIAITTANGYPiyLPKSDWKGL---QQLRSSFSLAIQDPGDATN 421
                 8*************************9998889*********...68899**********9887 PP

>> Polbeta  Polymerase beta, Nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   5.7e-07    0.0034      17      72 ..     211     266 ..     207     282 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 5.7e-07
                 TEEEEEE-S------EEEEEEEESS---HHHHHHHHHHHHHH..SSSEEEEEETTTS CS
     Polbeta  17 ylFGSrakgkareeSDiDlavllkekldleeelelaaeledi.klgkkvDlvdlnea 72 
                  +FGS+a++ + + SDiD  ++ ++  d++ + +l+a  + + k g  +D+ ++ +a
  CCD26180.2 211 HVFGSYATDLYLPGSDIDCVIISEKG-DKDSRSSLYALANFLkKRGLATDIEVIAKA 266
                 59*****************9999999.444444444333333323445555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4194.54
//
Query:       CCD26181.2  [L=165]
Description: hypothetical protein NDAI_0G04040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-16   60.8   0.0    1.7e-16   60.2   0.0    1.3  1  RF-1            RF-1 domain
  ------ inclusion threshold ------
       0.02   15.3   0.4      0.047   14.1   0.3    1.6  2  MRP-S28         Mitochondrial ribosomal subunit protein
      0.054   13.5   0.1       0.15   12.1   0.1    1.8  1  zinc_ribbon_11  Probable zinc-ribbon


Domain annotation for each model (and alignments):
>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   2.8e-20   1.7e-16       5      76 ..      41     136 ..      36     164 .. 0.81

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 2.8e-20
                 CE--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTT...........................TEEEEEEECSSSHHHHHHHHHHHHHHHHHH.HHHH CS
        RF-1   5 ieidekdleidtfrssGaGGQnVNktesaVrlthlpt...........................gvivvecqeeRsqekNrekAlerLkaklke.kele 75 
                  +i+ + +++++ rssG+GGQ+VNkt+s++++t  ++                           ++iv+++++ Rs+ekN++ +l++L +++k+     
  CCD26181.2  41 ATIPLDTFQVRFDRSSGPGGQKVNKTSSKCTMTL-RNlrdcqlipfeikkliiekplrhykkttDSIVIQSDTFRSREKNKQLCLNKLIEEIKNvC--- 135
                 579999**************************77.3346788999999999*********999977**************************7642... PP

                 H CS
        RF-1  76 e 76 
                 +
  CCD26181.2 136 S 136
                 2 PP

>> MRP-S28  Mitochondrial ribosomal subunit protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.46   2.7e+03      88     111 ..      28      53 ..      25      62 .. 0.67
   2 ?   14.1   0.3   7.8e-06     0.047      23      91 ..      64     131 ..      43     150 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.46
     MRP-S28  88 lkeakdl..kddfeDvpldtrhlkak 111
                 +k+ak+   + +++ +pldt +++++
  CCD26181.2  28 YKKAKEWmeNLSPATIPLDTFQVRFD 53 
                 56666662233567899998776655 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 7.8e-06
     MRP-S28  23 hpasrkvvlev.kvadLkleekqkhklklLag.prynpetdviklsserfesaaqNkrylsdilekLlkea 91 
                 ++ s k+++++ +++d +l + + +kl +      y+++td i + s+ f s+++Nk+ +    +kL++e 
  CCD26181.2  64 NKTSSKCTMTLrNLRDCQLIPFEIKKLIIEKPlRHYKKTTDSIVIQSDTFRSREKNKQLCL---NKLIEEI 131
                 6667777777634667788777777776644315699********************9985...4455544 PP

>> zinc_ribbon_11  Probable zinc-ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   2.4e-05      0.15      27      60 ..      61      94 ..      50     143 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 2.4e-05
  zinc_ribbon_11 27 qdvlcvscgctltlqrgsdgqeawfehdrlsvde 60
                    q+v  +s  ct+tl++  d+q   fe  +l +++
      CCD26181.2 61 QKVNKTSSKCTMTLRNLRDCQLIPFEIKKLIIEK 94
                    566779********************99998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       771  (0.043003); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1331.89
//
Query:       CCD26182.2  [L=598]
Description: hypothetical protein NDAI_0G04050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.1e-42  143.7   5.9    1.8e-30  106.2   0.4    2.5  2  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.4     1e-34   1.8e-30       2     157 ..     191     352 ..     190     361 .. 0.91
   2 !   39.6   0.8   2.4e-14   4.3e-10     162     214 ..     386     438 ..     372     439 .. 0.89

  Alignments for each domain:
  == domain 1  score: 106.2 bits;  conditional E-value: 1e-34
  RabGAP-TBC   2 elRgevWklllgyep..evkrlkksekkqeksekeksklekseeskelsqIkkDvprtfp...es...esfknkqgqnqLeriLkaysiynpevgYcqG 92 
                 e Rg++W+++++ ++  e +   + +  +e+++  ++++++++   +++ I++D++rtfp   +    +++k++++  +L+ +L a+++y+ ++gYcq 
  CCD26182.2 191 EWRGNAWWYFANGQHilEENIGVYADLLSEVEKLRDHDQQQHHLLDDIEIIERDLNRTFPdniHFqreQFQKQPPLIVSLRDVLTAFALYDRKIGYCQS 289
                 68***********9999888889999999999999999999999999*************86611564566666************************* PP

  RabGAP-TBC  93 mndivaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlk 157
                 mn+++++ll +++dee +Fw++v +  + +l+d+y+ +l+g+ r++ vl  ++k+++p+l+  ++
  CCD26182.2 290 MNFLAGLLL-LFMDEERTFWMLVIIT-NIYLPDVYSLDLEGVSRDQGVLLLCIKEYLPELWIQID 352
                 *********.999*************.9********************************86665 PP

  == domain 2  score: 39.6 bits;  conditional E-value: 2.4e-14
  RabGAP-TBC 162 dlelfaikwfltlflrefpletvlrlwD.lllegekfvllrvalailklleeel 214
                 +++l +++wf+ +f+  +p+et+lr+wD l++e ++f l++ +lailkl e el
  CCD26182.2 386 QITLCTSSWFMSCFTGILPIETTLRIWDcLFYESSHF-LFKSTLAILKLGEYEL 438
                 567899**********************777788888.**********988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4426.26
//
Query:       CCD26183.2  [L=210]
Description: hypothetical protein NDAI_0G04060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-27   93.1   2.5    1.2e-26   91.9   0.6    2.1  2  Get5_bdg   Binding domain to Get4 on Get5, Golgi to ER traffi
    3.4e-20   71.5   1.8    1.4e-19   69.5   0.3    2.5  2  Get5_C     Get5 C-terminal domain
    0.00043   20.0   0.6    0.00074   19.2   0.2    1.6  2  ubiquitin  Ubiquitin family


Domain annotation for each model (and alignments):
>> Get5_bdg  Binding domain to Get4 on Get5, Golgi to ER traffic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.6   2.1e-30   1.2e-26       1      52 [.       4      55 ..       4      56 .. 0.97
   2 ?    0.5   0.0      0.07   4.2e+02      10      26 ..      72      90 ..      71     100 .. 0.78

  Alignments for each domain:
  == domain 1  score: 91.9 bits;  conditional E-value: 2.1e-30
    Get5_bdg  1 sekeFvskFLTLatlnepvlskdYkkPLkevksLGVaLppLkYkYdpkrvkk 52
                +e+eFvskFLTL++l+e+ l+ +Y+kPL+e+ sLGV Lp+LkYkYdpkr+++
  CCD26183.2  4 AEQEFVSKFLTLTNLSESLLPGNYQKPLQEIVSLGVPLPALKYKYDPKRFNN 55
                69***********************************************997 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.07
    Get5_bdg 10 LTLatlnep..vlskdYkk 26
                LTL ++  p   lsk++++
  CCD26183.2 72 LTLKSIRPPkfLLSKEFNT 90
                8******997667888765 PP

>> Get5_C  Get5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.11   6.6e+02      11      26 ..      82      97 ..      81      99 .. 0.83
   2 !   69.5   0.3   2.4e-23   1.4e-19       1      38 []     173     210 .]     173     210 .] 0.98

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.11
      Get5_C 11 aLLknkfkndaearav 26
                 LL  +f+   ++ +v
  CCD26183.2 82 FLLSKEFNTNDTIHQV 97
                69******98888887 PP

  == domain 2  score: 69.5 bits;  conditional E-value: 2.4e-23
      Get5_C   1 eveVPWndIeaLLknkfkndaearavleRLqKGWeltk 38 
                 ev+VPW+dI++LLk+kf++d++a++vl+RL+KGW+++k
  CCD26183.2 173 EVSVPWEDIRTLLKAKFNSDVDADEVLARLKKGWDMAK 210
                 79***********************************8 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   1.2e-07   0.00074      14      70 ..      87     143 ..      72     145 .. 0.82
   2 ?   -2.9   0.0      0.98   5.8e+03       4      26 ..     182     204 ..     181     204 .. 0.72

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 1.2e-07
                 EEETTSBHHHHHHHHHHHHTSSGGGE.EEEETTEEE-TTSBHGGHTTSTTEEEEEEES CS
   ubiquitin  14 eveesdtveelKekiaekegipaeqq.rLiysGkvLedertleeygiqdgstlhlvlr 70 
                 e++ +dt+ ++K+ i  k++i  e   +L+ +GkvL+d   l ++g  ++++++++++
  CCD26183.2  87 EFNTNDTIHQVKQFIIGKTDIGNEGElKLLQKGKVLHDGMLLLDLGT-NNAVINVLVS 143
                 8999****************8776544******************76.7788887776 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.98
                 EETTSEEEEEEEETTSBHHHHHH CS
   ubiquitin   4 ktldgkkitleveesdtveelKe 26 
                 +tl + k+  +v+ ++ ++ lK+
  CCD26183.2 182 RTLLKAKFNSDVDADEVLARLKK 204
                 56556678888998888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       450  (0.025099); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.26s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1614.37
//
Query:       CCD26184.1  [L=95]
Description: hypothetical protein NDAI_0H00100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.5e-14   51.0   1.0    1.6e-13   50.3   1.0    1.4  1  Homeodomain  Homeodomain
    1.3e-05   25.0   0.1    2.1e-05   24.3   0.1    1.5  1  Homeobox_KN  Homeobox KN domain
  ------ inclusion threshold ------
      0.062   12.8   0.3       0.12   11.9   0.0    1.7  2  Homez        Homeodomain leucine-zipper encoding, Homez


Domain annotation for each model (and alignments):
>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   1.0   2.6e-17   1.6e-13       2      56 ..      39      93 ..      38      94 .. 0.98

  Alignments for each domain:
  == domain 1  score: 50.3 bits;  conditional E-value: 2.6e-17
                 T-SSSS-HHHHHHHHHHHHHSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHHHH CS
  Homeodomain  2 rkRttftkeqleeLeklFeenrypsaeereeLAkklgLeerqVkvWFqNrRakek 56
                 r+R  ++ke    Le+ F++++ ++++ere  Ak++g++  qV+vWF N+R++ k
   CCD26184.1 39 RSRSPISKENKLLLENIFQKKPWLNTKEREFVAKSCGMSALQVRVWFINKRMRTK 93
                 79***************************************************98 PP

>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   3.5e-09   2.1e-05      14      40 .]      65      91 ..      45      91 .. 0.88

  Alignments for each domain:
  == domain 1  score: 24.3 bits;  conditional E-value: 3.5e-09
  Homeobox_KN 14 edKeeLlkeTglsvkqitnWFINaRrR 40
                 +++e  +k +g+s+ q+  WFIN R R
   CCD26184.1 65 KEREFVAKSCGMSALQVRVWFINKRMR 91
                 5678899******************99 PP

>> Homez  Homeodomain leucine-zipper encoding, Homez
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.77   4.6e+03      16      24 ..      36      44 ..      35      48 .. 0.73
   2 ?   11.9   0.0     2e-05      0.12      33      51 ..      71      89 ..      52      95 .] 0.78

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.77
       Homez 16 kYysqhgll 24
                 Yy++  ++
  CCD26184.1 36 LYYRSRSPI 44
                589887665 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 2e-05
       Homez 33 ckksklsaqqVrdWFaske 51
                +k  ++sa qVr WF  k 
  CCD26184.1 71 AKSCGMSALQVRVWFINKR 89
                67889**********7764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       545  (0.0303977); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 762.04
//
Query:       CCD26185.1  [L=486]
Description: hypothetical protein NDAI_0H00110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-31  109.8   1.7    1.1e-27   96.9   0.0    2.9  3  Sir1      Regulatory protein Sir1
  ------ inclusion threshold ------
       0.16   12.2   0.4       0.71   10.3   0.1    2.2  2  Reg_prop  Two component regulator propeller


Domain annotation for each model (and alignments):
>> Sir1  Regulatory protein Sir1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   3.5e-05      0.31       5      60 ..      12      75 ..       9     123 .. 0.70
   2 ?   -3.3   0.1       1.4   1.2e+04      31      45 ..     200     215 ..     185     225 .. 0.59
   3 !   96.9   0.0   1.3e-31   1.1e-27       1     120 []     296     413 ..     296     413 .. 0.99

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.5e-05
        Sir1  5 ryavidgFlVdtekk..........kkiinpktkklkkltkeerekleklklvdldelkkysksdl 60
                ++++idgFl++++ k          k++++p    l k ++++   l kl ++d + +++ +ks l
  CCD26185.1 12 QFTIIDGFLINLNSKvvtdlssdesKTTLTPGGWYLLK-NTYNPMSLTKLYFIDSNYMFT-NKSVL 75
                79*************66444444444444444444444.556666666666666665555.44444 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.4
        Sir1  31 kkl.tkeerekleklk 45 
                 k l +kee++k+++l+
  CCD26185.1 200 KNLeKKEEQDKVKELE 215
                 3333555555555544 PP

  == domain 3  score: 96.9 bits;  conditional E-value: 1.3e-31
        Sir1   1 kisdryavidgFlVdtekkkkiinpktkklkkl.tkeerekleklklvdldelkkysksdlipvdskeLFelveteerefyetedgliivnkrtkkkkr 98 
                 kisd+++v  gFlVd+ +k kiinp+++++ +  t+ee+e +e+++lvd++ lk   ++++++vds++LF+++++++++fye+++g +++ + t+ k  
  CCD26185.1 296 KISDSLMVTGGFLVDIIEK-KIINPNEQDYLRNlTDEEKEYIEECDLVDWNILKL--TKHPYAVDSPQLFDTLNANNEDFYEDKNGDLWIVPPTEYKGA 391
                 69*****************.**********9999*********************..****************************************** PP

        Sir1  99 kesievrvipirlkkkkvkYLy 120
                  + +++r ip+++k+ +++++y
  CCD26185.1 392 LTPRKYRSIPLHFKSFGWRHIY 413
                 *******************998 PP

>> Reg_prop  Two component regulator propeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.8   1.6e+04       2      13 ..      23      34 ..      22      36 .. 0.80
   2 ?   10.3   0.1     8e-05      0.71       9      20 ..     371     382 ..     363     383 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.8
                BSSSCEEEEEE- CS
    Reg_prop  2 lpsnnvtaileD 13
                l+s  vt++  D
  CCD26185.1 23 LNSKVVTDLSSD 34
                788899999887 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 8e-05
                 EEEE-TTSCEEE CS
    Reg_prop   9 aileDsdGrlWv 20 
                 +++eD++G+lW+
  CCD26185.1 371 DFYEDKNGDLWI 382
                 89*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       788  (0.0439511); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 3569.30
//
Query:       CCD26186.1  [L=314]
Description: hypothetical protein NDAI_0H00120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-92  308.5   0.0    4.8e-92  308.3   0.0    1.0  1  DHO_dh    Dihydroorotate dehydrogenase
    8.4e-05   21.7   0.0     0.0048   16.0   0.0    2.1  2  FMN_dh    FMN-dependent dehydrogenase


Domain annotation for each model (and alignments):
>> DHO_dh  Dihydroorotate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.3   0.0   5.4e-96   4.8e-92       2     295 .]       5     296 ..       4     296 .. 0.98

  Alignments for each domain:
  == domain 1  score: 308.3 bits;  conditional E-value: 5.4e-96
                 G-EEETTEEESSSEEE-TTSSTTSSSHHHHHCTT.SSEEEEEEE-SS-B--S-S--EEEETTCTEEEE---S-BS-HHHHHHHHHHHHHHHHCC.CEEE CS
      DHO_dh   2 latkvlglkfknpiglAaGfdkegeeilkllklg.fgaieigsvtpkpqeGnpkPrvfrlkedrsvlNslGlnneGldavlekllkrrkeqeekkelgi 99 
                 latk+l+ +++np+++A+G+++++++ l++l+ + +ga++++s+t++ +eGnp+Pr+f+++ +  ++Ns+Gl+n+G+d++l+++l+r+++ ++  e +i
  CCD26186.1   5 LATKFLDYTYENPFMNASGVHCMTTKDLDELATSeAGAFITKSATTSLREGNPEPRYFSVPLG--SINSMGLPNKGIDYYLSYVLERQRKFPD--EGPI 99 
                 89*******************************99****************************..*************************998..78** PP

                 EEEE-TTSS.HHHHHHHHHHHHG..GGESEEEEES-SCTCCTSCCCGCHHHHHHHHHHHHHHHHSSEEEEEE-SSSSHHHHHHHHHHHH.HHTECEEEE CS
      DHO_dh 100 nlskakktenavddyvevvrkig..pfadilelNvSsPntpglrdlqekeelkaillkvvkevskvpvlvKlaPdltdeekkdiadvll.elkldgiiv 195
                 ++s+a+++   v+++ ++++ i+   f +i+elN+S+Pn+pg++++++++el++++l++v+ ++k+p+ +Kl+P ++d++++di++ +l +++l+++++
  CCD26186.1 100 FFSVAGMS---VEENLKLLKIIQesDFKGITELNLSCPNVPGKPQVAYDFELTKEILEKVFSFFKKPLGIKLPP-YFDFAHFDIMADILnQFPLSYVNS 194
                 *******9...************999************************************************.**********99999********* PP

                 ...BSEE--CTTCCGCCCCTT..SSEEEEEGGGHHHHHHHHHHHHHHTTT.S-EEEESS--SHHHHHHHHHHTECEEEESHHHHHHGTCHHHHHHHHHH CS
      DHO_dh 196 tNttvqrlaidlkseknvkan..ktGGlsGkalkdialkvirelykrlkkeipiIgvGGiesgeDalekieaGAslvqvytalvfegpkiakkikkele 292
                 +N++ ++l +d+ +e++v ++  ++GG++G+++k++al+++r++y+rl+k+i+i g+GGi++g+Da+e++ +GA+++q++t+l+++g  ++++++kel 
  CCD26186.1 195 INSIGNGLYVDIDKESVVIKPknGFGGIGGEYVKPTALANVRAFYTRLNKNIKIFGTGGITTGKDAFEHLLCGATMLQIGTELQKDGISVFDRVQKELI 293
                 *****************9988779**************************************************************************9 PP

                 HHH CS
      DHO_dh 293 elL 295
                 e++
  CCD26186.1 294 EIM 296
                 987 PP

>> FMN_dh  FMN-dependent dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0    0.0029        26      46      84 ..       3      40 ..       1      54 [. 0.76
   2 !   16.0   0.0   5.4e-07    0.0048     256     342 ..     230     308 ..     226     313 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.0029
                -B--EEETTEEESSSEEE--BSTGGGTSTT.HHHHHHHHH CS
      FMN_dh 46 vdlsttllGqklslPvliaPvglaklahpd.gelalaraa 84
                v+l+t++l+++++ P++ a+ g++ +  +d  ela+ + a
  CCD26186.1  3 VSLATKFLDYTYENPFMNAS-GVHCMTTKDlDELATSE-A 40
                789*************9886.88888888834454443.3 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 5.4e-07
                 -HHHCHHHHHHHH..SS-EEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHH CS
      FMN_dh 256 atidvLpeiveavggrievlvDgGirrGsDvlkAlalGAdavllGRpflyglaagGeeGvervleilraelertmallGvksvaeld 342
                 +++    +   +++++i+++  gGi++G+D++  l +GA++  +G  +        ++G+ +v++ +++el + m+  G ++++e +
  CCD26186.1 230 TALANVRAFYTRLNKNIKIFGTGGITTGKDAFEHLLCGATMLQIGTEL-------QKDGI-SVFDRVQKELIEIMEEKGYETIDEFR 308
                 5555555666778889*****************************887.......33444.57777777888888877777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       482  (0.0268838); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 2455.56
//
Query:       CCD26187.1  [L=407]
Description: hypothetical protein NDAI_0H00130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-51  173.2  14.2    4.7e-51  173.2  14.2    1.8  2  SBF       Sodium Bile acid symporter family


Domain annotation for each model (and alignments):
>> SBF  Sodium Bile acid symporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.21   3.7e+03     137     148 ..      23      34 ..       6      41 .. 0.55
   2 !  173.2  14.2   2.6e-55   4.7e-51       2     194 ..      62     257 ..      61     258 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.21
         SBF 137 vviiPliaGill 148
                  +ii +i+G+++
  CCD26187.1  23 TIIISIIIGLVI 34 
                 234444444444 PP

  == domain 2  score: 173.2 bits;  conditional E-value: 2.6e-55
         SBF   2 ilLilmmfpmglkveveklkellkr...pkalllglvlqwvikPllmfilakillrdlklepelavGlilvglapggamsnvwtylakGdlelsvvlva 97 
                 +++++mm+p++++ve+e l  ++++    k+l+++lvl+w+i P++mf+la+++  ++  epe++ G+i++g+a+++am++ w+++++Gd+ l+vv+v+
  CCD26187.1  62 VGMVIMMLPPLCNVEWEVLPSYIWSpyiGKQLIYSLVLNWIICPFIMFGLAWLV--LF-KEPEYREGIIMIGMARCIAMVITWNQISGGDMMLCVVIVI 157
                 799**********************77779**********************55..45.56************************************** PP

         SBF  98 lstllailltPlllyllaksl...eqttlkvpieeivksvlivviiPliaGillryillkhkGrewfeskllpavspisligllltivvifalkgeliv 193
                 +++ll+++l++ +  ++   +    + ++   ++ ++ksv ++++iPl aG+++r  +++  G+e+f ++++p+++p++li++++ti+vif+++g +++
  CCD26187.1 158 INSLLQMVLYAPYQIFFCYVItgtSYNHNVNVYSDVAKSVGVFLGIPLGAGFIIRFASFALVGKENFNKRVMPLIKPWGLIAFHYTIIVIFIGNGHSFL 256
                 **********66555555555443344544457899**********************************************************99887 PP

         SBF 194 e 194
                 +
  CCD26187.1 257 H 257
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2859.76
//
Query:       CCD26188.1  [L=632]
Description: hypothetical protein NDAI_0H00140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.2e-11   41.4  41.7    4.5e-10   39.0  40.7    2.8  1  MFS_1     Major Facilitator Superfamily
    1.3e-05   23.9  24.1    0.00055   18.5  24.1    2.4  1  TRI12     Fungal trichothecene efflux pump (TRI12)
    0.00071   18.5   8.0    0.00071   18.5   8.0    2.4  2  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0  40.7   7.5e-14   4.5e-10      22     353 .]      97     501 ..      73     501 .. 0.75

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 7.5e-14
       MFS_1  22 alaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslwlllvlrvlqGlgagalfpagaaliadwfpkee 118
                 + ++++   +s +++++++ a+++a+++++++rlsd fGr  +++++++l+++g +++  +    +   +++ ++  +g+ +++ + + +++d ++ + 
  CCD26188.1  97 YATSSYA-EHSLLSTVTVINAVVSAASQIVYSRLSDFFGRFILFVIAIVLYVVG-TIIQ-SqaYDVQRYAAGAIFYNAGYVGVLLILLLILSDFSSLKW 192
                 3334444.6788999***************************************.8888.3223444599***************************98 PP

       MFS_1 119 rgraigllsagfslGailgpllggllasslg.......Wravfyilaivsllafvlfllllpeepperkrkspkeee...................... 188
                 r ++    +  f + + +   +  +   ++        W  +f + +i +ll+++      +   +++++k+ k+e+                      
  CCD26188.1 193 RLFYQFAPTWPFIINTWISGNITLAANPLVHwswdvgmWAFIFPLSCIPMLLCMI---HMQWKASKTEEWKELKKEKsyyekhgllltlkelfwrldii 288
                 8888866666666666444444444444444222333355555555555555555...4445555555555555555699******************* PP

       MFS_1 189 ....................................kgtgpaplvp........awkallkdpvl...........willialllfffgfsglltllpl 232
                                                                       aw++++++ +l           w+ + +++l+ f+f++++ +l +
  CCD26188.1 289 gvllmvawlgcilvpltlaggvkskwndgriigpfvL--------GfvlvpifaAWEYFFARDPLipyalikdrgvWASMGISFLIDFIFYMASDYLYT 379
                 ******************6666665555555554444........055555666******999998888888877788888888888899999999999 PP

       MFS_1 233 ylqevlglsglllaglllallalvgailallagrlsdrlgr.rrrlllallllllaalglallavtssavllll.vlvliGfglgfvfpsllalasdla 329
                  l    + s + +a+ +++l+++v+ +++++++ l++r +r +++++++++l +l+  +l+ +   + ++ +++ +l ++G+g  +++ ++++ +++ +
  CCD26188.1 380 VLIVAVHES-VKSATRISSLSSFVSTVASPFFALLLTRCSRlKPFIMVGCSLWMLSMGLLYHFRGGEQSHSGIIgALCVWGIGTTLFTYPVNVSVQSAT 477
                 999999999.9***************************88734444444444444444444555557777777747777******************** PP

       MFS_1 330 ppeeagtasglfntagslggalgp 353
                 + e+++t+++++ t++ lg+a+g+
  CCD26188.1 478 SHENMATVTAINYTCYRLGSAIGA 501
                 **********************96 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5  24.1   9.2e-08   0.00055      80     480 ..     105     523 ..      99     613 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.2e-08
       TRI12  80 sslfstlwttg...qavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpagas...plfvgelmsnktkflgllivs 172
                 +sl+st+  +     a s +v  rl+d fgr  + +++ +l +vg+i+   a  ++   a   +    ag  g      l++ ++ s k +++  +  +
  CCD26188.1 105 HSLLSTVTVINavvSAASQIVYSRLSDFFGRFILFVIAIVLYVVGTIIQSQAYDVQRYAAGAIF--YNAGYVGVLlilLLILSDFSSLKWRLFYQFAPT 201
                 57778776555111566789***********99999999**********999998877665444..456777764111567789999999999999999 PP

       TRI12 173 ipvvvtsglspylgqrlaiqgswrw..ifyiyii.tsaiavllivv...wy...........yppsfaqlhgkkvrkreelakldwigiilvivgvslf 254
                  p ++ + +s  +         w w   ++ +i  +s+i +ll ++   w               s+ + hg   + +e + +ld ig++l+++    +
  CCD26188.1 202 WPFIINTWISGNITLAANPLVHWSWdvGMWAFIFpLSCIPMLLCMIhmqWKaskteewkelkKEKSYYEKHGLLLTLKELFWRLDIIGVLLMVAWLGCI 300
                 9*999999988877666655556662144555544688988888773333211111111111234666667777777888899**************** PP

       TRI12 255 llgvswggkpnspwnsakviglissglgslvvfalyevygkpvrpivppalfkdtrgfvcillissimga.mnlslviiypqqvvnifgsslknweeta 352
                 l+ ++  g  +s wn  ++ig +  g   + +fa +e +     p++p al+kd rg+ + + is ++   + ++   +y   +v +  s +k    ++
  CCD26188.1 301 LVPLTLAGGVKSKWNDGRIIGPFVLGFVLVPIFAAWEYFF-ARDPLIPYALIKD-RGVWASMGISFLIDFiFYMASDYLYTVLIVAVHES-VKS---AT 393
                 *************************************886.678*********9.67766667776665414566677887777777654.443...44 PP

       TRI12 353 wmsatasfgtgagvvvlgslfhlvrhirwqilvga.lwltaflgamssvnrdnk.naai..alsvlsgfvvawaqditmllvqfittdedlgvafavva 447
                  +s+ +sf +      +  l+     ++  i+vg+ lw+ + +g +      ++  + i  al  + g+  +       + vq  t+ e++    a+  
  CCD26188.1 394 RISSLSSFVSTVASPFFALLLTRCSRLKPFIMVGCsLWMLS-MGLLYHFRGGEQsHSGIigALC-VWGIGTTLFTYPVNVSVQSATSHENMATVTAINY 490
                 55666666665555566666666666677777774256544.4444444332220222211222.2233333333333445666666666666555555 PP

       TRI12 448 aarpfagsiftaafislysnrypkelashlssa 480
                 ++  +  +i +a   ++++++   ++   ++  
  CCD26188.1 491 TCYRLGSAIGAAVSGAIWTQKLYPDILKRVTEV 523
                 554444444444444556655444444444444 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   8.0   1.2e-07   0.00071      18     190 ..      78     250 ..      70     279 .. 0.76
   2 ?    0.3   8.8     0.042   2.5e+02      33     156 ..     369     502 ..     355     512 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.2e-07
                 CGGGTHHHHHHHHTSTT--SHHHHHH...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHH CS
    Sugar_tr  18 vigafltllkfaknfglsksksskeessvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigv 116
                 +i ++ + l+   ++ ++ + +s ++  +l++ ++ i  v++++++++ + l+d+fGR   ++ia+vl+v+g+++q  a     v+ +++g ++   g 
  CCD26188.1  78 FICGYGYGLDGNIRYIYTGYATSSYAEHSLLSTVTVINAVVSAASQIVYSRLSDFFGRFILFVIAIVLYVVGTIIQSQAY---DVQRYAAGAIFYNAGY 173
                 444444444444455555555555556789999999*******************************************9...99******99999998 PP

                 HHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-........TTHHHHHHHCCHHHHHHHHHHGGG CS
    Sugar_tr 117 GlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsn........adgwrillglqlvpallllilllf 190
                  ++  +  + +s ++  k+R     +yq+a t+ +++ +++  ++    n           w + + l+++p  ll+++ + 
  CCD26188.1 174 VGVLLILLLILSDFSSLKWRL----FYQFAPTWPFIINTWISGNITLAANplvhwswdVGMWAFIFPLSCIPM-LLCMIHMQ 250
                 888899999999999999995....688888888888888888887777777755554444555555566655.44444444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.042
                 TT--SHHHHHH...........HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHH.HHHHHHHH.HHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHH CS
    Sugar_tr  33 glsksksskee........ssvlsglivsiflvGaiiGslfagllgdrfGRkkslli.aavlfvig.avlqaaakgknsvevlivgRvlvGigvGlasv 121
                  ++ +++  ++        s +  + i s+ ++++++ s f+ ll +r +R k +++ ++ l + + ++l ++  g++s+  +i +  + Gig  l+++
  CCD26188.1 369 IFYMASDYLYTvlivavheSVKSATRISSLSSFVSTVASPFFALLLTRCSRLKPFIMvGCSLWMLSmGLLYHFRGGEQSHSGIIGALCVWGIGTTLFTY 467
                 555555555555555555566677899999*********************888888545555555156677777779999999999*******99999 PP

                 HHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHH CS
    Sugar_tr 122 lvPmyisEiApkklRgalvslyqlaitfGilvaai 156
                  v + ++  +  +   +++ ++ +++ +G  ++a 
  CCD26188.1 468 PVNVSVQSATSHENMATVTAINYTCYRLGSAIGAA 502
                 88888888777777777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1078  (0.0601261); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.24s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 4324.29
//
Query:       CCD26189.1  [L=589]
Description: hypothetical protein NDAI_0H00150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-07   31.0   0.1    1.1e-06   29.2   0.0    2.0  2  SET       SET domain
  ------ inclusion threshold ------
       0.47   11.3   2.9         22    5.9   0.1    2.9  2  RTTN_N    Rotatin, an armadillo repeat protein, centriole fun


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.2e-10   1.1e-06      18     169 .]      53     280 ..      20     280 .. 0.70
   2 ?   -2.2   0.0      0.51   4.6e+03     147     167 ..     437     457 ..     391     457 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.2 bits;  conditional E-value: 1.2e-10
                 EEEECCEECHHHHHHHHHH....................................HTEEEEEXGGXX..GGSX.HHHHHHHTTSSHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx....................................xxxxxxxxxxxx..xxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  18 eypeeiiltkdeadksele....................................aylfslpeapkn..laft.kelakasastllqklakdqkqaeke 77 
                 ++p +++lt ++a   ++                                      y + l+ +  n   ++t ++l++++++ l++k+++d +  ++e
  CCD26189.1  53 SVPTNLLLTYQNATDFFNWsiakggnlptnnpnaitqlylshlklnpeakksqwdKYVEILSLDL-NqpYFWTvDQLQQLKGTDLYIKIQQDFATIIQE 150
                 45555666666666666556666666677777666665555555555544444444444444333.256777799**************9999999999 PP

                 HHHHTHHHHHHHXTTTS.....X............XXHCCCCC...HCCCHEEEETEEEEEECCC..............GTTGGGCEEXSSSSEEEEEE CS
                 xxxxxxxxxxxxxxxxx.....x............xxxxxxxx...xxxxxxxxxxxxxxxxxxx..............xxxxxxxxxxxxxxxxxxxx RF
         SET  78 dtdaalkasskaesdln.....a............skpeagaf...saiagysidaralksgnga..............gplarflNHsCdpNcnltvq 142
                   +     +++  +  +                   ++++++     +++ +++++ra++                   +p++++lNH    ++ + ++
  CCD26189.1 151 YIELLQILKVDILDQEKlqtatIshyinshlptllDGKLPWNHfvsYLWSHCIFKSRAFPQLLLNnagsdvgninlaflFPIVDLLNHKN--DVVVKWE 247
                 988877777776666665555505556667777774445554456666666666666666655556677777777*************74..5545666 PP

                 EE......TTSSEEEEEESSXBXTTEEEEEXTT CS
                 xx......xxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 143 nv......lrgprvavfAtrdIkkGeEltidYg 169
                 +       ++++ ++++++     G++++++Yg
  CCD26189.1 248 SSndinnkNDNKVLTFITQETLHVGDQIFNNYG 280
                 667799999***********************8 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.51
                 SSEEEEEESSXBXTTEEEEEX CS
                 xxxxxxxxxxxxxxxxxxxxx RF
         SET 147 gprvavfAtrdIkkGeEltid 167
                 + +  +++ + I k++E++++
  CCD26189.1 437 NLTSNLVSFKTILKNDEIFLN 457
                 455567778899999999976 PP

>> RTTN_N  Rotatin, an armadillo repeat protein, centriole functioning
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0025        22      24      54 ..     340     370 ..     327     391 .. 0.83
   2 ?    4.4   0.3    0.0075        67      11      42 ..     435     467 ..     428     478 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0025
      RTTN_N  24 lvkekellkkLlewFnfepvpeeeevLaLll 54 
                 l  ++ +  +Ll++F+f +  + e+vL+L +
  CCD26189.1 340 LNTKEPIPDNLLKFFGFLSKLQTEQVLTLRS 370
                 6677888899*****************9965 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.0075
      RTTN_N  11 esklehgllseedl.vkekellkkLlewFnfep 42 
                 ++ l  +l+s++++  +++ +l +Ll+ F++++
  CCD26189.1 435 NNNLTSNLVSFKTIlKNDEIFLNSLLQSFGITN 467
                 678999********6666777889*****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       798  (0.0445089); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 4372.04
//
Query:       CCD26190.1  [L=141]
Description: hypothetical protein NDAI_0H00160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.6e-41  140.2   0.5    2.9e-41  140.1   0.5    1.0  1  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
  ------ inclusion threshold ------
      0.036   14.3   0.1      0.062   13.6   0.1    1.4  2  CBM_4_9      Carbohydrate binding domain


Domain annotation for each model (and alignments):
>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   0.5   3.2e-45   2.9e-41       3     121 .]      14     135 ..      12     135 .. 0.97

  Alignments for each domain:
  == domain 1  score: 140.1 bits;  conditional E-value: 3.2e-45
                  HHHHHHCTTT.SSEEEEEEECTTTEEEEEESS-..HHHHHHHHHHTTT-EEEEEEEEEECCS.ECCEEEEEEEEE--TTS-HHHHHHHHHHHHHHHHH CS
  Cofilin_ADF   3 eafkelksgkktkyilfkidddkeeivveeege..tyeelreelpeseprYavydveyehdd.eskrsklvfIswvPdsapikqkmlyasskdalkke 97 
                  +af++lk+gkk+k+ilf ++d+k+eivv+e+++  +y+ ++e+lpe+++ Yavyd+eye +  e+krsk++f++w+Pd api++km+yasskdal+++
   CCD26190.1  14 SAFNDLKLGKKYKFILFALNDEKTEIVVKETSTdqSYDAFLEKLPENDCLYAVYDFEYEINAsEGKRSKIIFFTWSPDVAPIRSKMVYASSKDALRRA 111
                  79****************************66677************************9999***************99****************** PP

                  CTTSEEEEEE-CGGCCSHHHHHHH CS
  Cofilin_ADF  98 lkgisveieatdldelteeelkek 121
                  l+gi+v+i+ td +e+++e++++k
   CCD26190.1 112 LNGIAVDIQGTDFSEVSYEDVLDK 135
                  ********************9986 PP

>> CBM_4_9  Carbohydrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.1   6.9e-06     0.062      57     135 ..      17      90 ..      11      93 .. 0.92
   2 ?   -3.2   0.0         1   9.1e+03      81      99 ..     115     133 ..      99     137 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 6.9e-06
                 CCS-TT-EEEEEEEEEESSTSEEEEEEEEEESSTTSCTCEEEEEEEEEESTSEEEEEEEEE-SSCSCCEEEEEEEEC-S CS
     CBM_4_9  57 irlekgktYtvsfwvkassgksrtikvkigdtdadganydevadekvelkgewktlegtFtipkstdenvelyvelgkp 135
                 + l+ gk+Y++ + +  +++  ++i vk + td    +yd + ++  e++  +  + +++ i+ s  ++ ++ ++++ p
  CCD26190.1  17 NDLKLGKKYKFILFALNDEK--TEIVVKETSTDQ---SYDAFLEKLPENDCLYAVYDFEYEINASEGKRSKIIFFTWSP 90 
                 67999***************..**********99...9******999****************9999999999999654 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1
                 EEEEEEESSTTSCTCEEEE CS
     CBM_4_9  81 ikvkigdtdadganydeva 99 
                 i v i++td ++ +y+ v 
  CCD26190.1 115 IAVDIQGTDFSEVSYEDVL 133
                 5566666666556666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       444  (0.0247643); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 1035.00
//
Query:       CCD26191.1  [L=628]
Description: hypothetical protein NDAI_0H00170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       681  (0.0379832); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4292.65
//
Query:       CCD26192.1  [L=568]
Description: hypothetical protein NDAI_0H00180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-50  171.4  40.8    3.7e-50  171.0  40.8    1.2  1  AA_permease_2  Amino acid permease
    1.8e-08   33.5  36.0    2.4e-08   33.0  36.0    1.1  1  AA_permease    Amino acid permease


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.0  40.8   4.2e-54   3.7e-50       1     420 [.      78     519 ..      78     545 .. 0.80

  Alignments for each domain:
  == domain 1  score: 171.0 bits;  conditional E-value: 4.2e-54
  AA_permease_2   1 lsllsafalvigsvigsgifvkn..laasggpalilwvwiavligslavllvyaEls...salprsgGiyvytkaafgkkvaflsawfnwfayvpv 91 
                    l+ +s+ +l i++++gsgif ++  ++ + g  ++l+++i +l   + v+l ++ +s   ++  + +G ++++++++ ++   + + f  +  + +
     CCD26192.1  78 LGVFSTMILFISRILGSGIFSVPsaMYVNCGGNTLLYFLIWSLTA-IFVILWIIFISgiwCLVTKYRGKKNFLEQTYDRPRLMMGVTFGIYTVLSG 172
                    789********************9844445555555555555555.33444444443133449**************7666655555556666666 PP

  AA_permease_2  92 lasi.lsvaasyllnalgp..dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.stetdtff 183
                    ++++ ++v+++y+l+alg   ++  + + ++li i+i+i  +l + ++ik +  iqn lg +k+ +++ ++ ++gl+++ +   s++  t++++++
     CCD26192.1 173 MSLSsAIVFGKYILYALGFdhHIA-ESYWCKLISIFIVIAAVLTHGLSIKRGVQIQNALGSMKL-ILIMLMYCTGLYALLFYSPSESyNTAWNSSW 266
                    66652688********99754443.46677889*******************************.89999*********99777766777777777 PP

  AA_permease_2 184 pngwpgv.......llgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpddeianlsnlgsvaalffeavggk 270
                    +++ + +       ++++  ++++f+G++s+  v++e+k+  +++++a++++l ++l++yll+n+a+l  ++ +ei+n ++l  v+++++ +++g 
     CCD26192.1 267 TSFQDKNmistssiAAAFISSFFCFSGWDSVHAVTSEIKNptRTLKIAGPLSLFVCLICYLLMNVAYLKLLTYEEIKNAGPL--VGQVLYTKLFGA 360
                    77555323344455889999*****************9988789**********************************9997..5********987 PP

  AA_permease_2 271 .vvaiivvilialsllgaintavigssrvlealardgvlP..rffakvnkfgspiraiiltaivslillllfllassaaynfllsvsslgliisyl 363
                      + ++v++ ials++ +++ +++g+sr+++++ ++g+lP  + f k    + ++ ai +   ++ i+ +l+l + + ++++l s+  +g+ ++ l
     CCD26192.1 361 eLGGRLVSLSIALSSVSNMLVVIYGTSRMNQEVFKEGYLPysKLFLKEIYGNPTFPAILVCGGLTAIW-ILILPSQGPSFDYLISMEGWGNQVFLL 455
                    7***************************************9866666555556778888888888666.567677799****************** PP

  AA_permease_2 364 lliigalilrkkrphl...kr..pgkilvaiig.alfllfllvalffppk.gpatqssliytii 420
                    l++ig++i+r++ ++     +  +++ +++ +g +l++ ++++a+f+  + + ++++   y++ 
     CCD26192.1 456 LIAIGLFIYRYRHRNDdaeDKptIKASPIGVLGiILVSSYMVIAPFIGDQsNNSVGFLPPYQVT 519
                    ************9977555224577789999986777888888888653325557777777733 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0  36.0   2.7e-12   2.4e-08       7     429 ..      88     499 ..      83     540 .. 0.78

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 2.7e-12
  AA_permease   7 lggviGtglfvglgvvlsqaGplga..llayllagvviflvmlslgeiatngpksggfytyasrflgp...elGfviGlnylfswitvlaleltaasi 99 
                  +  + G g+f   +    ++G++++  +l++ l+ ++++l ++ ++ i +++ k  g  ++ +++ ++    +G++ G+ +++s+   l  +++   +
   CCD26192.1  88 ISRILGSGIFSVPSAMYVNCGGNTLlyFLIWSLTAIFVILWIIFISGIWCLVTKYRGKKNFLEQTYDRprlMMGVTFGIYTVLSGM-SLSSAIVFGKY 184
                  77889999**999999999999888888999999999999999***********************98766689999998666665.56666666666 PP

  AA_permease 100 liqfwelvtdlpkawvt...gavflvvl.liinlvgvkvygeaefilalikiiaiiafiivg..iillaggkpnkgagfrflgdngsifknnlppgfa 191
                  ++  +++ +++  + ++   +++f+v+  ++ + +++k   +++  l ++k+i i  ++  g  + l  +   +     + ++++++        +f+
   CCD26192.1 185 ILYALGFDHHIA-ESYWcklISIFIVIAaVLTHGLSIKRGVQIQNALGSMKLILIMLMYCTGlyALLFYSPSESYN---TAWNSSWT--------SFQ 270
                  666666666666.9999***888888761455679***************************65222222222222...45666666........223 PP

  AA_permease 192 keeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvla 289
                  +++  ++++++++f+ ++f f+G  +v ++ +E+k+P +++++a    ++  +i Y+l+ +++  l+ +   ++    +    ++v+++k  g  + +
   CCD26192.1 271 DKNMISTSSIAAAFISSFFCFSGWDSVHAVTSEIKNPTRTLKIAGPLSLFVCLICYLLMNVAYLKLLTYEEIKNAGPLV----GQVLYTKLFGAELGG 364
                  45666689**************************************************************987777333....8************** PP

  AA_permease 290 plinaviltaalssansslysasRvlyslakdglaP...kvlkkvskrgvP.lraillsmiisllalllaslnlaapivfnfllaisaliglivwlli 383
                   l+ + i ++ +s ++  +y +sR+ +   k+g++P    +lk +  +g+P   ail++  + ++ +l+  ++ +    f++l+++ +  + + +lli
   CCD26192.1 365 RLVSLSIALSSVSNMLVVIYGTSRMNQEVFKEGYLPyskLFLKEI--YGNPtFPAILVCGGLTAIWILILPSQGP---SFDYLISMEGWGNQVFLLLI 457
                  *************************************95455555..4555268999999999999988877777...79******999998888888 PP

  AA_permease 384 ilsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillil 429
                  ++ +  +R     ++ ++e+ + +   ++ + +l++++++++++i+
   CCD26192.1 458 AIGLFIYRYR--HRNDDAEDKPTIK--ASPIGVLGIILVSSYMVIA 499
                  7777766654..3344444433332..2334444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.42
# Mc/sec: 4018.51
//
Query:       CCD26193.1  [L=1682]
Description: hypothetical protein NDAI_0H00190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.5e-57  194.6  31.0    1.4e-35  123.3  14.5    3.7  3  ABC_membrane   ABC transporter transmembrane region
    1.1e-54  184.7   0.0    3.1e-30  105.5   0.0    2.8  2  ABC_tran       ABC transporter
    6.8e-10   38.8   4.3    0.00024   20.6   1.1    4.1  3  SMC_N          RecF/RecN/SMC N terminal domain
    1.3e-08   34.9   0.1    0.00036   20.5   0.1    2.7  2  RsgA_GTPase    RsgA GTPase
    1.1e-07   32.0   6.6     0.0057   16.5   0.1    4.2  4  AAA_21         AAA domain, putative AbiEii toxin, Type IV TA 
    4.5e-07   29.9   0.4     0.0023   18.0   0.2    3.1  2  MMR_HSR1       50S ribosome-binding GTPase
    4.9e-07   30.5  11.4    0.00011   22.8   0.0    3.4  3  AAA_23         AAA domain
    6.9e-07   28.9   0.1      0.049   13.4   0.0    2.8  2  AAA_29         P-loop containing region of AAA domain
    3.2e-05   24.2   0.0       0.44   10.8   0.1    3.3  2  AAA_22         AAA domain
    6.2e-05   22.2   0.0      0.029   13.4   0.0    2.3  2  T2SSE          Type II/IV secretion system protein
    7.7e-05   22.8   3.0      0.081   13.0   0.2    3.4  3  Dynamin_N      Dynamin family
    0.00013   22.4   0.5       0.59   10.5   0.0    3.1  2  AAA_16         AAA ATPase domain
    0.00021   21.1   1.4     0.0082   15.9   0.4    3.8  4  AAA_15         AAA ATPase domain
    0.00051   19.4   0.0        1.2    8.4   0.0    2.5  2  Zeta_toxin     Zeta toxin
    0.00071   19.3   0.0       0.05   13.3   0.0    2.6  2  AAA_24         AAA domain
     0.0011   19.1   3.0        1.1    9.3   0.1    2.9  2  DUF87          Helicase HerA, central domain
     0.0029   17.1   0.1        0.6    9.6   0.0    2.5  2  AAA_7          P-loop containing dynein motor region
     0.0031   18.0   1.6        9.3    6.7   0.1    4.0  3  AAA            ATPase family associated with various cellular
     0.0052   16.6   0.0        2.1    8.1   0.0    2.5  2  ATP_bind_1     Conserved hypothetical ATP binding protein
     0.0067   16.2   0.0        2.5    7.8   0.0    2.4  2  AAA_30         AAA domain
  ------ inclusion threshold ------
      0.012   15.6   0.0         12    5.9   0.0    3.5  2  CbiA           CobQ/CobB/MinD/ParA nucleotide binding domain
      0.016   14.0   0.0      0.098   11.4   0.0    2.0  2  Adeno_IVa2     Adenovirus IVa2 protein
      0.017   15.2   0.2        6.3    6.8   0.0    3.1  2  AAA_14         AAA domain
      0.018   14.7   0.2        4.8    6.9   0.0    3.5  3  IstB_IS21      IstB-like ATP binding protein
      0.026   14.1   0.0       0.76    9.3   0.0    2.8  3  AAA_25         AAA domain
      0.035   13.8   0.0        1.4    8.6   0.0    2.5  2  Guanylate_kin  Guanylate kinase
      0.053   12.7   0.0        4.2    6.4   0.0    2.3  2  DUF815         Protein of unknown function (DUF815)
      0.055   12.8   0.1         11    5.3   0.0    2.3  2  FtsK_SpoIIIE   FtsK/SpoIIIE family
      0.061   12.9   0.1        2.8    7.5   0.0    2.5  2  cobW           CobW/HypB/UreG, nucleotide-binding domain
      0.067   13.3   0.0        0.2   11.8   0.0    1.8  1  ERp29_N        ERp29, N-terminal domain
      0.091   13.3   0.0         30    5.2   0.0    3.0  2  AAA_18         AAA domain
       0.11   12.1   0.0        3.1    7.4   0.0    2.4  2  AAA_27         AAA domain
       0.16   12.2   1.4         22    5.3   0.1    3.2  2  Roc            Ras of Complex, Roc, domain of DAPkinase
       0.16   12.2   0.0         33    4.6   0.0    2.8  2  AAA_33         AAA domain


Domain annotation for each model (and alignments):
>> ABC_membrane  ABC transporter transmembrane region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.1   0.00047      0.25       6      94 ..     366     454 ..     361     457 .. 0.83
   2 !   68.0   4.2   1.9e-21   9.8e-19      96     273 ..     511     686 ..     503     687 .. 0.88
   3 !  123.3  14.5   2.6e-38   1.4e-35      37     270 ..    1114    1352 ..    1044    1355 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00047
                   HHHHHHHHHHHHHHHHHHHHHHHHHSSTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHCSTHHHHHH CS
  ABC_membrane   6 llailagvlsplfplvlgrildtlldkgdpetealnvysllllllglaqfilallqsyll.nvtgerlskrlrrklfkkilrqpmsffdt 94 
                   + a l+  +s++  ++l+ril+ + d++++ + +l+ +++ +++++ + +++  +q  ++   +  r+++ + ++++ k lr   s   +
    CCD26193.1 366 FWACLSAPISFVPTVLLKRILEYVDDQSSAPK-NLAWFYVSCMFACGVLGAIFRGQALFYgRRVCVRMRSIIISEIYSKALRRKASTMTN 454
                   556667778888899***********999999.999999988888888888888888888466*******************98887666 PP

  == domain 2  score: 68.0 bits;  conditional E-value: 1.9e-21
                   CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH CS
  ABC_membrane  96 svGellsrltndvsklrdglgeklglffqslltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirt 192
                   + G ++++++ d+ k++++ g+ ++ +   l+++v++ +++ +lg   +lv+ a+++ +++++  +a +l +++kk    ++k+ + ++E++++ir 
    CCD26193.1 511 NLGAIINLMAVDAFKVSEICGYLHFFVEALLMVVVALALLYHLLGY-AALVGGALVVAFLPLNLKLATLLGEYQKKSLAVTDKRIQKLNETFQAIRI 606
                   68******************99888666666666655555555555.79************************************************ PP

                   HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHH CS
  ABC_membrane 193 VkafgreeyflekfekaleeakkagikkaianglligitqllgllsyalalwfGttlvisgelsvgdlvvflslfailfga 273
                   +k+f +e++f++ +e  +e++++  +k+ +++++++ i ++ +++++++  +  + +v+  +l+   +++ lslf++l ++
    CCD26193.1 607 IKYFSWEDNFTRDIETVREKELHLLFKRSLIWAFSSFIWFITPSIVTSCS-FAFYIYVQGETLTTPVAFTALSLFTLLKTP 686
                   *********************************99888777777777777.5557777778**************999776 PP

  == domain 3  score: 123.3 bits;  conditional E-value: 2.6e-38
                    H.......HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTHHHHHHSCHHHHHHHHHHHHHHHHHHHCHHHHHHHH CS
  ABC_membrane   37 t.......ealnvysllllllglaqfilallqsyllnvtgerlskrlrrklfkkilrqpmsffdtnsvGellsrltndvsklrdglgeklglffq 124 
                    +       + + +y+ +++++g++q+ la +++ ++  tg ++s+++ ++l++ +l+  ++ffd ++ G++++r+++d++ +++ l+  l   f 
    CCD26193.1 1114 KqavtntsHSTFYYLSIYFGIGALQSSLAAIRNIINFTTGLNASRKIFKSLLHTVLHSKLRFFDATPIGRIMNRFSKDIEAVDQELTPYLEAAFY 1208
                    04445554557788899****************************************************************************** PP

                    HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH CS
  ABC_membrane  125 slltfvgglivmfylgwkltlvllailpliilvsaviakilkklkkkeqkavakassvaeEslsgirtVkafgreeyflekfekaleeakkagik 219 
                     l+ +v++++++ ++ +++ ++ ++i +l++lv ++++  +++lk+ e+ + +++++++ E+l gi t++a+g e++f  +  ++++e++k  + 
    CCD26193.1 1209 CLVECVSTMLLIAFITPQFLILAIFIGFLYYLVGYFYMAASRELKRFESVTKSPIYQHFSETLVGIVTIRAYGDEKRFMLENLHKIDENNKPFFY 1303
                    *********************************************************************************************** PP

                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.TSSTHHHHHHHHHHHHHH CS
  ABC_membrane  220 kaianglligitqllgllsyalalwfGttlvis.gelsvgdlvvflslfail 270 
                       +n++l+ +++++g+l+++ a   G++ +++ ++l++g + + l+++  +
    CCD26193.1 1304 LWAFNRWLSFRIDMIGSLVVFGA---GVFIILNiDNLDSGLAGISLTYAISF 1352
                    ***********************...88888888999999988888887655 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   5.5e-24   2.9e-21       1     136 [.     749     899 ..     749     900 .. 0.89
   2 !  105.5   0.0   5.9e-33   3.1e-30       2     137 .]    1426    1590 ..    1425    1590 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 5.5e-24
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG...B-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlke...qeleslrkeigvlpqepqlfpeltvren......esdeeiekals 90 
                 l+++++++k+g++ +++G++G+GKS+Ll +l+g+++ ++G+i + + d ++   +++  + ++i++++q + l +++ vr+n      + +++ +++++
  CCD26193.1 749 LRDLNIDFKPGKLNVVIGPTGSGKSSLLLALLGEMHLENGNIIVPSLDPRDelvIDHDGMTNSIAYCSQGAWLLNDT-VRNNilfnspYNEARYNAVVE 846
                 6799**************************************888777777788**********************9.*********977777666666 PP

                 HSTTGG.......TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  91 klglke.......lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpt 136
                    lk         + t +++++ +LSgGqkqrv+laral ++++ +llD++ 
  CCD26193.1 847 ACCLKRdfeilkaGDMTEIGEKGITLSGGQKQRVSLARALYSNSRHVLLDDCL 899
                 66666666666665678889999***************************975 PP

  == domain 2  score: 105.5 bits;  conditional E-value: 5.9e-33
                  EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH......HHHTCHHHHHHHS CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxx RF
    ABC_tran    2 knvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren......esdeeiekalskl 92  
                  knv++ ++++ kv++vG++GaGKSt++ +l + l+ + G i++d+ d+++ +l++lr++i ++pq+p+lf+++ +r+n       sd+ i kal+++
  CCD26193.1 1426 KNVTFVVEPNCKVGVVGRTGAGKSTIITALFRFLDAETGYIKIDDIDITTVNLTKLRRSITIIPQDPTLFSGT-IRSNldpyneFSDDAIFKALRRV 1521
                  8************************************************************************.********984444466666666 PP

                  TTGG........................TTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  xxxx........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   93 glke........................lkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137 
                  +l++                          ++ +++++++LS+Gq+q v+lar+ll+ pk++llDE+ta
  CCD26193.1 1522 NLINenestgpassetspsstenvnkflNLKNEITEGGNNLSHGQRQLVCLARSLLRCPKIILLDEATA 1590
                  66666666666666666666666666666666777999*****************************96 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   7.4e-05     0.039      17      50 ..     751     782 ..     743     789 .. 0.78
   2 ?   -0.3   0.0       1.1   5.9e+02     136     174 ..     871     905 ..     825     944 .. 0.77
   3 !   20.6   1.1   4.5e-07   0.00024      28     209 ..    1439    1630 ..    1423    1638 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 7.4e-05
                 EEEEETTS.SEEEEEESTTSSHHHHHHHHHHHCTT CS
                 xxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  17 tvilpfsk.sftaivGpNGSGKsnlldAilFvLGe 50 
                    ++f++ ++++++Gp GSGKs+ll A+   LGe
  CCD26193.1 751 DLNIDFKPgKLNVVIGPTGSGKSSLLLAL---LGE 782
                 55667776358***************999...665 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 1.1
                 CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 136 lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDek 174
                 +LSgG+k+ v+la   A+++ ++   +llD+  +a D +
  CCD26193.1 871 TLSGGQKQRVSLAR--ALYSNSR--HVLLDDCLSAVDSH 905
                 69*****9888774..3443333..35677777777765 PP

  == domain 3  score: 20.6 bits;  conditional E-value: 4.5e-07
                  EEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--..........BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSE..EEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxx RF
       SMC_N   28 aivGpNGSGKsnlldAilFvLGersakklrseklsdlihk..........skekasvkkaeveitfdnedkklkiekeevsisrrvkrkge..seyk 112 
                   +vG+ G+GKs ++ A+ F + ++++  ++ ++++    +            + + + ++++   +d  ++    ++  ++  rrv   +e  s+  
  CCD26193.1 1439 GVVGRTGAGKSTIITAL-FRFLDAETGYIKIDDIDITTVNltklrrsitiIPQDPTLFSGTIRSNLDPYNEF--SDDAIFKALRRVNLINEneSTGP 1532
                  58999999999999999.655555554666555543333332233333334556666666666666555554..44444555555544333113332 PP

                  E..TTEEE-HHHHHHHHH.CTT-ST..TCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCCC CS
                  x..xxxxxxxxxxxxxxx.xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  113 i..ngkevtkkevselle.sagisk..elLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemlek 204 
                     + +  + ++v+++l+ + +i++  ++LS G+++Lv la        +   + llDe  a +D++  +k+ e ++++ k++ ++ i++r + + +
  CCD26193.1 1533 AssETSPSSTENVNKFLNlKNEITEggNNLSHGQRQLVCLARS----LLRCPKIILLDEATASIDNASDAKIQETIRKEFKESTILTIAHRLRSVCD 1625
                  2115555666888888873345654337*********998754....45556699************************************998888 PP

                  -SCEE CS
                  xxxxx RF
       SMC_N  205 adklv 209 
                   dk++
  CCD26193.1 1626 YDKIL 1630
                  77765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   6.9e-07   0.00036      57     130 ..     709     790 ..     689     794 .. 0.78
   2 !   11.4   0.0   0.00044      0.23      90     131 ..    1425    1467 ..    1404    1474 .. 0.80

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 6.9e-07
                  GG--HHH.......HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTTSSHHHHHHHHCTT-----S-- CS
  RsgA_GTPase  57 Dlleeee.......eleelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSGvGKStLinallpelelktgev 130
                  Dll+e+e       ++++  ++++  + +v   +++++ +l++l+  +k  k+ v++G++G GKS+L+ all+e++l+ g++
   CCD26193.1 709 DLLQEKEtekysqlTIDKNGNRIAFQNATVAWDKKNSEFKLRDLNIDFKPgKLNVVIGPTGSGKSSLLLALLGEMHLENGNI 790
                  6666666555544445555566666666777777777889999*9999998************************9998876 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00044
                   HHHHHHHCTTSEEE.EECSTTSSHHHHHHHHCTT-----S--- CS
  RsgA_GTPase   90 leelkellkdktsv.lvGqSGvGKStLinallpelelktgevs 131 
                   +++++ +++ ++ v +vG +G+GKSt+i al   l+++tg ++
   CCD26193.1 1425 IKNVTFVVEPNCKVgVVGRTGAGKSTIITALFRFLDAETGYIK 1467
                   56666666665544489***************99999999886 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       4.5   2.3e+03      79     146 ..     142     210 ..     130     222 .. 0.82
   2 !   16.5   0.1   1.1e-05    0.0057       1      20 [.     761     780 ..     761     812 .. 0.84
   3 !   13.2   0.6   0.00011     0.057       3      80 ..    1439    1523 ..    1438    1561 .. 0.81
   4 ?    2.3   0.0      0.23   1.2e+02     236     279 ..    1561    1605 ..    1560    1617 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 4.5
      AAA_21  79 ersqv.eeklssvetllesgllldkrsleeedvfnpeargirggvsvfslkelsvsepndlqfgkaltd 146
                 e+s++ +e +++v +l ++gl+l+k s + + +fn++ + i +++++   + + + ++n++q++k  ++
  CCD26193.1 142 EKSRIlSEFIIVVIQLYLHGLILFKYSNKGISDFNHKNSFINALLWSILTIIIVLRIWNINQNSKWVNK 210
                 566667899999999999999999999999999999999999999999999999999999999875555 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.1e-05
      AAA_21   1 lnvliGpNgsGKSnLLdald 20 
                 lnv+iGp gsGKS+LL al 
  CCD26193.1 761 LNVVIGPTGSGKSSLLLALL 780
                 7*****************94 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 0.00011
      AAA_21    3 vliGpNgsGKSnLLdaldllarl.......drdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrler 80  
                  +++G+ g+GKS+++ al  + ++       d+  + + +    + +i++ip  ++l + +i++++  ++ +s++  ++   r++ 
  CCD26193.1 1439 GVVGRTGAGKSTIITALFRFLDAetgyikiDDIDITTVNLTKLRRSITIIPQDPTLFSGTIRSNLDPYNEFSDDAIFKALRRVNL 1523
                  68***************888888******98888888888888999999999999999999999999999999998877666655 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.23
      AAA_21  236 elSdGtkrllalltallralkkgsllliDEpEngLHP....kllrrll 279 
                  +lS G+++l +l+ +llr +   +++l+DE  ++++     k+++++ 
  CCD26193.1 1561 NLSHGQRQLVCLARSLLRCP---KIILLDEATASIDNasdaKIQETIR 1605
                  6899**************99...9******666665555555555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0031       1.7       3      28 ..     763     789 ..     762     825 .. 0.79
   2 !   18.0   0.2   4.4e-06    0.0023       1      42 [.    1437    1479 ..    1437    1650 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0031
                 EEEESTTSSHHHHHHHHHTS.TEEESS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge.kaivsd 28 
                 +++G + +GKS+L+ al+ge + + ++
  CCD26193.1 763 VVIGPTGSGKSSLLLALLGEmHLENGN 789
                 689***************975444444 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 4.4e-06
                  EEEEEESTTSSHHHHHHHHHTS.TEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1    1 evaivGrpNvGKStLinaltge.kaivsdkpgtTrdinegrvk 42  
                  +v++vGr+ +GKSt+i al++   a+++ ++   +di++ +++
  CCD26193.1 1437 KVGVVGRTGAGKSTIITALFRFlDAETGYIKIDDIDITTVNLT 1479
                  69******************95555555555444444444444 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1         9   4.8e+03     153     183 ..     688     718 ..     582     736 .. 0.56
   2 !   22.8   0.0   2.1e-07   0.00011      10      39 ..     749     779 ..     746     781 .. 0.89
   3 !   14.5   0.2   7.4e-05     0.039      24     126 ..    1440    1560 ..    1426    1630 .. 0.52

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 9
      AAA_23 153 erleelekeleeledekkllekleqekekek 183
                 ++l +++    + +   + +++l+qeke ek
  CCD26193.1 688 DQLSNMISFVIQSKVSLDRIQDLLQEKETEK 718
                 2222222222222222223333333333333 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 2.1e-07
      AAA_23  10 frdqeidFsk.gltlItGpNGaGKTTildAi 39 
                 +rd +idF++ +l++++Gp+G+GK+++l A+
  CCD26193.1 749 LRDLNIDFKPgKLNVVIGPTGSGKSSLLLAL 779
                 5899****9967***************9886 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 7.4e-05
      AAA_23   24 ItGpNGaGKTTildAiklaLygetprlsrks...........grgfeksdveiese.................gkvkayvelt....fenkdgrytr 88  
                  ++G +GaGK+Ti+ A+   L  et+  + ++           +            +                  + ++y e++    f+  ++   +
  CCD26193.1 1440 VVGRTGAGKSTIITALFRFLDAETGYIKIDDidittvnltklR------------RsitiipqdptlfsgtirSNLDPYNEFSddaiFKALRR---V 1521
                  69**************999988776555443333322222220............01222222233333233333333333333333332222...4 PP

      AAA_23   89 siererelskkkgkttkkaklellei.deleqfisellg 126 
                  ++ +e e +   +++t+ + +e++++  +l+++i+e  +
  CCD26193.1 1522 NLINENESTGPASSETSPSSTENVNKfLNLKNEITEGGN 1560
                  444444444444444444444444444444444444333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   9.3e-05     0.049      16      41 ..     753     778 ..     746     783 .. 0.82
   2 !   12.4   0.0   0.00018     0.096      24      48 ..    1437    1461 ..    1424    1467 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 9.3e-05
      AAA_29  16 tieidlkgatlltGpsGsGKSTllDA 41 
                  i++++    +++Gp+GsGKS+ll A
  CCD26193.1 753 NIDFKPGKLNVVIGPTGSGKSSLLLA 778
                 57788777999************955 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 0.00018
      AAA_29   24 atlltGpsGsGKSTllDAiqalLvp 48  
                   + ++G++G+GKST++ A+   L +
  CCD26193.1 1437 KVGVVGRTGAGKSTIITALFRFLDA 1461
                  56689***********999877765 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0     0.003       1.6       7      28 ..     761     782 ..     755     805 .. 0.83
   2 !   10.8   0.1   0.00083      0.44      10      51 ..    1440    1482 ..    1438    1622 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.003
      AAA_22   7 ilvvtGesGtGKTtllrrlleq 28 
                 + vv+G++G+GK+ ll  ll +
  CCD26193.1 761 LNVVIGPTGSGKSSLLLALLGE 782
                 569***********99888765 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00083
      AAA_22   10 vtGesGtGKTtllrrlleqldeeakaee.erpevvfvtlpsst 51  
                  v+G +G+GK+t +  l++ ld+e    +  + ++ +v+l+++ 
  CCD26193.1 1440 VVGRTGAGKSTIITALFRFLDAETGYIKiDDIDITTVNLTKLR 1482
                  89******************86544444655555555555554 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   5.5e-05     0.029     133     162 ..     763     792 ..     720     829 .. 0.82
   2 !    6.2   0.0    0.0088       4.6     127     163 ..    1433    1468 ..    1397    1501 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.5e-05
       T2SSE 133 lvsGgTgsGKttllyallkeinksderivt 162
                 +v G+TgsGK+ ll all e++ ++ +i++
  CCD26193.1 763 VVIGPTGSGKSSLLLALLGEMHLENGNIIV 792
                 788*******************99999875 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0088
       T2SSE  127 rerglilvsGgTgsGKttllyallkeinksderivtv 163 
                  + ++ + v G Tg GK+t++ al  +++++    + +
  CCD26193.1 1433 EPNCKVGVVGRTGAGKSTIITALFRFLDAE-TGYIKI 1468
                  446777899*****************9998.444455 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       6.3   3.3e+03      45      75 ..     451     481 ..     425     517 .. 0.71
   2 !   13.0   0.2   0.00015     0.081       2      31 ..     763     792 ..     763     794 .. 0.92
   3 !    8.3   0.0    0.0041       2.2       1      41 [.    1438    1524 ..    1438    1587 .. 0.59

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 6.3
                 --CCS...SSEEEET-EB--CHHHHHHHHHH CS
   Dynamin_N  45 easeravkeelkekekkledfsevreeieke 75 
                 ++++++ +++ k++e++ ed++++++++ ++
  CCD26193.1 451 TMTNKNDDDDEKDQETNTEDLQDITTALPES 481
                 3345666677777777777777777766554 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00015
                 EEEEBTTTTHHHHHHHHHTS--S---SSS- CS
   Dynamin_N   2 avvGsqSsGKSSvlnaLlgedilprgpnpt 31 
                 +v+G + sGKSS+l aLlge  l +g++++
  CCD26193.1 763 VVIGPTGSGKSSLLLALLGEMHLENGNIIV 792
                 79******************9999888775 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0041
                  EEEEEBTTTTHHHHHHHHHTS......--S---SSS---S-EEEEE........................................C CS
   Dynamin_N    1 iavvGsqSsGKSSvlnaLlge......dilprgpnptTrrplelql........................................g 41  
                  + vvG + +GKS+++ aL +        i   +  +tT ++++l+                                          
  CCD26193.1 1438 VGVVGRTGAGKSTIITALFRFldaetgYIKIDDIDITTVNLTKLRRsitiipqdptlfsgtirsnldpynefsddaifkalrrvnlI 1524
                  78***************9864222111234444556677777766666666666666666666666666666555555555555551 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0036       1.9      28      47 ..     763     782 ..     751     948 .. 0.81
   2 !   10.5   0.0    0.0011      0.59      28      60 ..    1439    1468 ..    1431    1605 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0036
      AAA_16  28 llsGesGvGKsslvrellra 47 
                 +++G+ G+GKssl+ +ll +
  CCD26193.1 763 VVIGPTGSGKSSLLLALLGE 782
                 79************888754 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0011
      AAA_16   28 llsGesGvGKsslvrellralekdggiflrgkc 60  
                   ++G  G GKs+++++l+r l ++ g+    k 
  CCD26193.1 1439 GVVGRTGAGKSTIITALFRFLDAETGYI---KI 1468
                  599***************9988883332...22 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.7       6.3   3.3e+03     128     178 ..      51     101 ..      45     154 .. 0.56
   2 ?   -3.0   1.0       8.8   4.6e+03     207     228 ..     456     477 ..     434     519 .. 0.44
   3 !   14.0   0.0   5.7e-05      0.03      14      43 ..     749     779 ..     747     786 .. 0.94
   4 !   15.9   0.4   1.5e-05    0.0082      28      84 ..    1440    1527 ..    1423    1642 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.3
      AAA_15 128 knelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikklee 178
                 +n+++++  +++k++ + +l   ++ ++e+ ++e +   +++++   +++ 
  CCD26193.1  51 SNYYNYDYLHLKKENLIDQLLYDTTASEEETETENQPLLSNARNAATQYNG 101
                 455666666666666655555555555555554444444444444444433 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 8.8
      AAA_15 207 sdedsekkssllgklkekilee 228
                 +d+d+ek +++ ++ +++i   
  CCD26193.1 456 NDDDDEKDQETNTEDLQDITTA 477
                 2222333333333333333222 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 5.7e-05
      AAA_15  14 lkdveidlsee.ltvliGkNnsGKSsileal 43 
                 l+d  id+++  l+v+iG+ +sGKSs+l al
  CCD26193.1 749 LRDLNIDFKPGkLNVVIGPTGSGKSSLLLAL 779
                 78999****999****************998 PP

  == domain 4  score: 15.9 bits;  conditional E-value: 1.5e-05
      AAA_15   28 liGkNnsGKSsilealdlFlnnkekknkkvikiekedleifeniseskdikIdvef...................................a 84  
                  ++G+ ++GKS+i+ al  Fl+ +      +iki++ d+ + + ++  ++i I  +                                     
  CCD26193.1 1440 VVGRTGAGKSTIITALFRFLDAE----TGYIKIDDIDITTVNLTKLRRSITIIPQDptlfsgtirsnldpynefsddaifkalrrvnlineN 1527
                  89*******************88....899***********************999766666666666655555444433333333333320 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0026       1.4      17      52 ..     760     796 ..     747     854 .. 0.85
   2 !    8.4   0.0    0.0022       1.2      21      51 ..    1440    1470 ..    1433    1476 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0026
  Zeta_toxin  17 klillgGqpGAGKselaellkdele.rqgnvvrldpD 52 
                 kl ++ G +G+GKs+l+ +l  e++ ++gn+++ + D
  CCD26193.1 760 KLNVVIGPTGSGKSSLLLALLGEMHlENGNIIVPSLD 796
                 56678899*****************99***9986655 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.0022
  Zeta_toxin   21 lgGqpGAGKselaellkdelerqgnvvrldp 51  
                  ++G +GAGKs+++++l + l+++ +++++d 
  CCD26193.1 1440 VVGRTGAGKSTIITALFRFLDAETGYIKIDD 1470
                  789******************9999999985 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0      0.14        74       6      22 ..     763     779 ..     760     814 .. 0.73
   2 !   13.3   0.0   9.4e-05      0.05       4      57 ..    1437    1486 ..    1435    1555 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.14
      AAA_24   6 liyGpsgiGKTtlakel 22 
                 +++Gp g+GK++l++ l
  CCD26193.1 763 VVIGPTGSGKSSLLLAL 779
                 799**********9988 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 9.4e-05
      AAA_24    4 kiliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevv 57  
                  k+ ++G  g+GK+t+++ l   + f+d e G+ ++d++++ ++ ++++++  ++
  CCD26193.1 1437 KVGVVGRTGAGKSTIITAL---FRFLDAETGYIKIDDIDITTV-NLTKLRRSIT 1486
                  899****************...*****************9988.4444444444 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0023       1.2      28      62 ..     764     799 ..     760     831 .. 0.89
   2 !    9.3   0.1    0.0021       1.1      26      45 ..    1438    1457 ..    1435    1465 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0023
       DUF87  28 ilgsTGsGKSntvavLleellekkgatili..lDpHG 62 
                 ++g TGsGKS +   Ll e+    +++i++  lDp  
  CCD26193.1 764 VIGPTGSGKSSLLLALLGEMH-LENGNIIVpsLDPRD 799
                 89*******************.999999986666655 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0021
       DUF87   26 lAilgsTGsGKSntvavLle 45  
                  ++++g+TG+GKS+ +  L++
  CCD26193.1 1438 VGVVGRTGAGKSTIITALFR 1457
                  79***********9998876 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.035        18      36      60 ..     762     786 ..     752     796 .. 0.82
   2 !    9.6   0.0    0.0011       0.6      29      61 ..    1431    1463 ..    1425    1480 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.035
       AAA_7  36 vllvGptGtGKtviikdllkkldke 60 
                  +++GptG+GK++++  ll +++ e
  CCD26193.1 762 NVVIGPTGSGKSSLLLALLGEMHLE 786
                 5789***********9999888755 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0011
       AAA_7   29 llknkkpvllvGptGtGKtviikdllkkldkek 61  
                  +++ + +v +vG tG GK++ii+ l++ ld e+
  CCD26193.1 1431 VVEPNCKVGVVGRTGAGKSTIITALFRFLDAET 1463
                  677788999*****************9999554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2       6.6   3.5e+03      19      78 ..     437     501 ..     433     519 .. 0.57
   2 ?    5.8   0.0     0.034        18       3      30 ..     764     791 ..     762     826 .. 0.83
   3 ?    6.7   0.1     0.018       9.3       3      96 ..    1440    1555 ..    1438    1645 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 6.6
                 HHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTS..TS.EEEEEETGGGHHHHH..TTCC CS
         AAA  19 akelgvefleisgsellskyvgesekkirelfkeakeka..kp.silfiDEidalaksr..sgse 78 
                 ++e+ ++ l+ ++s++++k   + ek+ +   ++++      p s +  +Eidal+++   s++e
  CCD26193.1 437 ISEIYSKALRRKASTMTNKNDDDDEKDQETNTEDLQDITtaLPeSPVTAEEIDALNETTdaSKKE 501
                 55555666666666666664444444444444444333333244667778999998888433333 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.034
                 EESSTTSSHHHHHHHHHHHHTHEEEEEE CS
         AAA   3 lyGppGtGKTllakavakelgvefleis 30 
                 ++Gp G GK++l  a+  e++ e  +i 
  CCD26193.1 764 VIGPTGSGKSSLLLALLGEMHLENGNII 791
                 79*****************987655554 PP

  == domain 3  score: 6.7 bits;  conditional E-value: 0.018
                  EESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCSSS.............STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHT CS
         AAA    3 lyGppGtGKTllakavakel..........gvefleisgsellsk.............yvgesekkirelfkeakekakp.silfiDEidalaksrs 75  
                  ++G  G GK++++ a+ + l          ++++ ++++++l+ +             ++  + +  +e+ ++a  ka    + +i E ++ ++++ 
  CCD26193.1 1440 VVGRTGAGKSTIITALFRFLdaetgyikidDIDITTVNLTKLRRSitiipqdptlfsgTIRSNLDPYNEFSDDAIFKA-LrRVNLINENESTGPAS- 1534
                  689999999999999999983333333222244666666666644777777777766633334444444444443333.22555555555555555. PP

                  TCCCHHHHHHHHHHHHHHHHT CS
         AAA   76 gseseeeervvnqLlteldgv 96  
                  +++s ++++ vn++l+  ++ 
  CCD26193.1 1535 SETSPSSTENVNKFLNLKNEI 1555
                  444444444555555444333 PP

>> ATP_bind_1  Conserved hypothetical ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0     0.004       2.1       1      34 [.     764     797 ..     764     802 .. 0.93
   2 ?    5.8   0.0     0.019        10       1      23 [.    1440    1462 ..    1440    1474 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.004
  ATP_bind_1   1 vvGpaGsGKttfvgalseilelrgrsvavvNLDP 34 
                 v+Gp GsGK+++  al   ++l++ ++ v  LDP
  CCD26193.1 764 VIGPTGSGKSSLLLALLGEMHLENGNIIVPSLDP 797
                 89*******************9999999999999 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.019
  ATP_bind_1    1 vvGpaGsGKttfvgalseilelr 23  
                  vvG  G+GK+t++ al  +l+++
  CCD26193.1 1440 VVGRTGAGKSTIITALFRFLDAE 1462
                  89**************9998876 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.022        11      18      46 ..     759     788 ..     755     798 .. 0.74
   2 !    7.8   0.0    0.0048       2.5      21      46 ..    1438    1464 ..    1428    1483 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.022
      AAA_30  18 drvavltGpAGtGKttalkal.reaweaag 46 
                  ++ v+ Gp G+GK+ +l al  e++ ++g
  CCD26193.1 759 GKLNVVIGPTGSGKSSLLLALlGEMHLENG 788
                 4689************99887344444444 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0048
      AAA_30   21 avltGpAGtGKttalkalreaweaa.g 46  
                  + ++G+ G+GK+t+++al + ++a+ g
  CCD26193.1 1438 VGVVGRTGAGKSTIITALFRFLDAEtG 1464
                  5689**************888888745 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.023        12      15      99 ..     985    1201 ..     763    1212 .. 0.84
   2 ?    5.2   0.0     0.039        21       6      28 ..    1442    1464 ..    1440    1611 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.023
                  HHHHHHHHHHHTT--EEEEEEEESSCCCCHHTTEB-HHHH......................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......................................................... RF
        CbiA   15 laanLaralarrglrVllvDaDpqannlaileglendiep......................................................... 54  
                  l+ n+a+ la+   +V + + D + n ++++ g  +++e+                                                         
  CCD26193.1  985 LSSNSAINLAE-ADKVTAKKEDGD-NTANLAAGRLIEEETkangvvsirvyqwylnifggwktisflstifvatqlvfisqswwvrhwvstsihevy 1079
                  45667777777.666666665555.222234466666665888999999999999999999999999999999999999999999999999999999 PP

                  .............................................................................CCHCCCHHHHHHCHCHHHH. CS
                  .............................................................................xxxxxxxxxxxxxxxxxxx. RF
        CbiA   55 .............................................................................dlkrllellealgkkkall. 73  
                                                                                               ++k ++ ll+++ ++k  + 
  CCD26193.1 1080 tfvkqrihaslttnigsvmnmrynhgplmistqdkqavtntshstfyylsiyfgigalqsslaairniinfttglnaSRKIFKSLLHTVLHSKLRFf 1176
                  9999999999999999999999***************************************************998888888888888888866669 PP

                  ...EEEEEEEEESS...-TTCHHHHHH CS
                  .xxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   74 .lkiagvvlnrvdgeneetllkealee 99  
                    +++g + nr+ ++  +++  + l+ 
  CCD26193.1 1177 dATPIGRIMNRFSKD--IEAVDQELTP 1201
                  ************999..7777777765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.039
                  SSTTSSHHHHHHHHHHHHHHTT- CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA    6 tkGGvGKTtlaanLaralarrgl 28  
                  +  G+GK+t+ ++L r l  +  
  CCD26193.1 1442 GRTGAGKSTIITALFRFLDAETG 1464
                  568*************9988433 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00019     0.098      77     110 ..     748     782 ..     723     810 .. 0.83
   2 ?   -0.7   0.0      0.91   4.8e+02      89     108 ..    1438    1456 ..    1361    1458 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00019
  Adeno_IVa2  77 elsslnyglqP.viGviyGPtGsGksqllrnliss 110
                 +l  ln++ +P  + v+ GPtGsGks ll +l+  
  CCD26193.1 748 KLRDLNIDFKPgKLNVVIGPTGSGKSSLLLALLGE 782
                 567789998884589****************9975 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.91
  Adeno_IVa2   89 iGviyGPtGsGksqllrnli 108 
                  +Gv  G tG+Gks ++ +l 
  CCD26193.1 1438 VGV-VGRTGAGKSTIITALF 1456
                  565.59*********99985 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.012       6.3       3      44 ..     760     801 ..     758     826 .. 0.83
   2 ?    4.7   0.0     0.056        29       7      48 ..    1440    1478 ..    1436    1495 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.012
      AAA_14   3 kilvitGaRrvGKTtllkqlikellvkkesilyinldderdk 44 
                 k+ v+ G+  +GK+ ll  l+ e   ++ +i+  +ld  ++ 
  CCD26193.1 760 KLNVVIGPTGSGKSSLLLALLGEMHLENGNIIVPSLDPRDEL 801
                 6789**************999888889999999999976664 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.056
      AAA_14    7 itGaRrvGKTtllkqlikellvkkesilyinldderdkklad 48  
                  ++G   +GK+t++  l++ l     ++ yi++dd + ++ + 
  CCD26193.1 1440 VVGRTGAGKSTIITALFRFLD---AETGYIKIDDIDITTVNL 1478
                  7788899**********8777...999999999988866553 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0091       4.8      11      67 ..     720     779 ..     712     792 .. 0.60
   2 ?    2.0   0.0      0.29   1.5e+02      43      67 ..    1430    1455 ..    1417    1470 .. 0.79
   3 ?    0.8   0.1      0.69   3.6e+02      95     146 ..    1565    1615 ..    1560    1633 .. 0.75

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0091
   IstB_IS21  11 aklpaqktledidfraarsl.dkrkvk.eLatl..sfiekkenivllGpsGvGKshlaial 67 
                 ++l   k  + i+f++a+ + dk++ + +L+ l  +f   k n v++Gp+G GKs l  al
  CCD26193.1 720 SQLTIDKNGNRIAFQNATVAwDKKNSEfKLRDLniDFKPGKLN-VVIGPTGSGKSSLLLAL 779
                 6666666666677765554414444445554431145555555.578********999986 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.29
   IstB_IS21   43 fiekken.ivllGpsGvGKshlaial 67  
                  f+ + ++ + ++G +G+GKs + +al
  CCD26193.1 1430 FVVEPNCkVGVVGRTGAGKSTIITAL 1455
                  55444442669**********99998 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.69
   IstB_IS21   95 rdgklaralkrllkvdllilDdlgllpldqaeaellfeviekryerrsiiit 146 
                  ++ +l   +++ll++  +il d ++  +d+a+ +++ e i k ++  s+i+t
  CCD26193.1 1565 GQRQLVCLARSLLRCPKIILLDEATASIDNASDAKIQETIRKEFKE-STILT 1615
                  566777778889998555555557899***************9965.55555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       7.5     4e+03      57      80 ..       8      32 ..       7      35 .. 0.82
   2 ?    9.3   0.0    0.0014      0.76      20      57 ..     747     783 ..     729     796 .. 0.76
   3 ?    0.9   0.0      0.54   2.8e+02      38      53 ..    1440    1455 ..    1419    1459 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 7.5
      AAA_25 57 vatGkpwlg.pvapeqgkVlyvsaE 80
                v++ +p+++ + +pe+g+V y+  +
  CCD26193.1  8 VLQSCPFWHyDDVPECGRVKYIGYD 32
                66789999996679*******9877 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0014
      AAA_25  20 pprrwlvkgllpagelallaGapgtGKttlaldlalav 57 
                  ++r+l  ++   g+l++++G++g+GK+ l+l l  ++
  CCD26193.1 747 FKLRDLNIDF-KPGKLNVVIGPTGSGKSSLLLALLGEM 783
                 5566666667.469******************997665 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.54
      AAA_25   38 laGapgtGKttlaldl 53  
                  ++G++g+GK+t+ + l
  CCD26193.1 1440 VVGRTGAGKSTIITAL 1455
                  79*********99877 PP

>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0026       1.4       3      36 ..     760     794 ..     758     810 .. 0.88
   2 ?    2.2   0.0      0.23   1.2e+02       7      31 ..    1440    1464 ..    1437    1475 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0026
                    SEEEEESTTTSSHHHHHHHHHHHSTTTEE.E--EE CS
  Guanylate_kin   3 rpvvlvgpsgaGksslkkaLlselpekfg.vsvsh 36 
                    ++ v++gp+g Gkssl  aLl e   + g ++v++
     CCD26193.1 760 KLNVVIGPTGSGKSSLLLALLGEMHLENGnIIVPS 794
                    6679*******************999998799986 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.23
                     EESTTTSSHHHHHHHHHHHSTTTEE CS
  Guanylate_kin    7 lvgpsgaGksslkkaLlselpekfg 31  
                     +vg +gaGks+++ aL++ l  + g
     CCD26193.1 1440 VVGRTGAGKSTIITALFRFLDAETG 1464
                     7899*************99888777 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.061        32      57      81 ..     763     787 ..     754     796 .. 0.84
   2 ?    6.4   0.0    0.0081       4.2      55     104 ..    1437    1490 ..    1407    1496 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.061
      DUF815  57 LLwGarGtGKSslvkallneyaeeg 81 
                 +++G  G+GKSsl+ all e++ e+
  CCD26193.1 763 VVIGPTGSGKSSLLLALLGEMHLEN 787
                 56899*************9988665 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0081
      DUF815   55 nvLLwGarGtGKSslvkallneyaeeg....Lrlievekedlkelpklvellre 104 
                  +v ++G  G+GKS+++ al++ + +e+    +  i+++  +l++l + ++++ +
  CCD26193.1 1437 KVGVVGRTGAGKSTIITALFRFLDAETgyikIDDIDITTVNLTKLRRSITIIPQ 1490
                  56679**************99988887784444477777777777776666655 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.026        14      43      60 ..     763     780 ..     710     784 .. 0.86
   2 ?    5.3   0.0     0.021        11      42      59 ..    1438    1455 ..    1420    1459 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.026
                   EEE--TTSSHHHHHHHHH CS
  FtsK_SpoIIIE  43 lvaGatgsGKStalntLi 60 
                   +v+G tgsGKS  l +L+
    CCD26193.1 763 VVIGPTGSGKSSLLLALL 780
                   799**********99986 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.021
                    EEEE--TTSSHHHHHHHH CS
  FtsK_SpoIIIE   42 llvaGatgsGKStalntL 59  
                    + v+G+tg GKSt + +L
    CCD26193.1 1438 VGVVGRTGAGKSTIITAL 1455
                    559***********9998 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0052       2.8       3      33 ..     762     792 ..     760     818 .. 0.81
   2 ?    2.8   0.0      0.15        79       3      21 ..    1438    1456 ..    1436    1472 .. 0.84

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0052
                 EEEEESTTCCHHHHHHHHHCT--SS-EEEEE CS
        cobW   3 tvltGflGsGKTtLlnhllenraglklaviv 33 
                  v+ G+ GsGK++Ll +ll + + ++  +iv
  CCD26193.1 762 NVVIGPTGSGKSSLLLALLGEMHLENGNIIV 792
                 5899***************776666666665 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.15
                  EEEEESTTCCHHHHHHHHH CS
        cobW    3 tvltGflGsGKTtLlnhll 21  
                  ++++G  G+GK+t++++l 
  CCD26193.1 1438 VGVVGRTGAGKSTIITALF 1456
                  5799***********9987 PP

>> ERp29_N  ERp29, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00039       0.2      51      91 ..    1266    1306 ..    1239    1315 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00039
                  H-SSEEEEEEEEBSSSS-TTHHHHHHTT--TTC-SEEEEES CS
     ERp29_N   51 ateellvaevGikdyGekenkelgerykvdkesyPviflfk 91  
                     e lv  v i+ yG+++   l + +k+d+++ P ++l+ 
  CCD26193.1 1266 HFSETLVGIVTIRAYGDEKRFMLENLHKIDENNKPFFYLWA 1306
                  457899********************************975 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.056        30       3      22 ..     764     784 ..     763     841 .. 0.73
   2 ?    4.8   0.0     0.076        40       1      19 [.    1438    1460 ..    1438    1538 .. 0.76

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.056
      AAA_18   3 ltGtpGvGKttlakeL.skrl 22 
                 + G+ G+GK++l  +L  +++
  CCD26193.1 764 VIGPTGSGKSSLLLALlGEMH 784
                 89**********999853332 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.076
      AAA_18    1 IlltGtpGvGKttlakeL....s 19  
                  +++ G  G+GK+t+  +L     
  CCD26193.1 1438 VGVVGRTGAGKSTIITALfrflD 1460
                  6899***********99944442 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0058       3.1      15      46 ..     750     779 ..     745     783 .. 0.82
   2 ?    1.7   0.0      0.31   1.6e+02      31      49 ..    1440    1458 ..    1427    1460 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0058
      AAA_27  15 tdrsldfsaeeadlhliyGpNEAGKstalrAi 46 
                  d ++df+    +l +++Gp  +GKs++l A+
  CCD26193.1 750 RDLNIDFK--PGKLNVVIGPTGSGKSSLLLAL 779
                 45566665..899***************9997 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.31
      AAA_27   31 iyGpNEAGKstalrAisdl 49  
                  ++G   AGKst+++A+ ++
  CCD26193.1 1440 VVGRTGAGKSTIITALFRF 1458
                  89999**********9776 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.091        48       3      21 ..     763     781 ..     762     792 .. 0.86
   2 ?    5.3   0.1     0.042        22       1      21 [.    1437    1457 ..    1437    1486 .. 0.70

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.091
                 EEESSTTSSHHHHHHCHCT CS
         Roc   3 vlvGdsgvGKtsllkrfve 21 
                 v++G +g+GK+sll  ++ 
  CCD26193.1 763 VVIGPTGSGKSSLLLALLG 781
                 78************98875 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.042
                  EEEEESSTTSSHHHHHHCHCT CS
         Roc    1 KvvlvGdsgvGKtsllkrfve 21  
                  Kv +vG +g+GK+++++ + +
  CCD26193.1 1437 KVGVVGRTGAGKSTIITALFR 1457
                  8999************99873 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.063        33       3      21 ..     763     781 ..     761     795 .. 0.84
   2 ?    4.4   0.0     0.072        38       4      26 ..    1440    1462 ..    1438    1552 .. 0.82

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.063
      AAA_33   3 llvGlpGsGKstlaerllk 21 
                 +++G+ GsGKs l+  ll 
  CCD26193.1 763 VVIGPTGSGKSSLLLALLG 781
                 789*********9887765 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.072
      AAA_33    4 lvGlpGsGKstlaerllkklgav 26  
                  +vG  G+GKst ++ l + l+a+
  CCD26193.1 1440 VVGRTGAGKSTIITALFRFLDAE 1462
                  79************998877643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1682 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1421  (0.0792571); expected 358.6 (0.02)
Passed bias filter:                      740  (0.0412739); expected 358.6 (0.02)
Passed Vit filter:                        93  (0.00518713); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              34  [number of targets reported over threshold]
# CPU time: 1.24u 0.33s 00:00:01.57 Elapsed: 00:00:00.48
# Mc/sec: 10594.23
//
Query:       CCD26194.1  [L=300]
Description: hypothetical protein NDAI_0H00200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-16   60.5   0.3    2.5e-09   36.8   0.1    3.7  2  RRM_1            RNA recognition motif. (a.k.a. RRM, RBD, or 
    0.00026   21.0   0.0    0.00095   19.2   0.0    1.9  2  RRM_7            RNA recognition motif
  ------ inclusion threshold ------
      0.026   14.3   0.0        7.9    6.3   0.0    2.4  2  RRM_Rrp7         Rrp7 RRM-like N-terminal domain
        4.1    7.5   8.6        8.4    6.4   8.6    1.5  1  Caprin-1_C       Cytoplasmic activation/proliferation-associa


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.1   5.5e-13   2.5e-09       1      70 []      31     106 ..      31     106 .. 0.92
   2 !   17.7   0.0   5.3e-07    0.0024       1      69 [.     181     260 ..     181     261 .. 0.79

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 5.5e-13
                 EEEESETTTSSHHHHHHHHHT.TSCEEEEEEEEE......TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFsk.fGpiksiklvrd......etgkskgfafVeFeskedAekAlealngkklggrelk 70 
                 +fVgn+++++t e+L+ +F++ fG++ +i+l+++       + ++ ++a V F+++ d ++++++++ + ++ re++
  CCD26194.1  31 IFVGNVAHEATVEDLENVFKDeFGSV-EIDLPNKehhnkaGHAPASKHALVIFPQEIDYDAIKAKYDTTVIHEREIH 106
                 8*************************.*******766666666778899*************************996 PP

  == domain 2  score: 17.7 bits;  conditional E-value: 5.3e-07
                 EEEESETTTSSHHHHHHHHHTTSCE..EEEEEEEE.TTTS.......EEEEEEEEESS.HHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpi..ksiklvrd.etgk.......skgfafVeFes.kedAekAlealngkklggrel 69 
                 l+V+nLp+++t  e+ elF+   +      + +rd +tgk       ++g+afV+Fe   +d ++  ++l+g++l++rel
  CCD26194.1 181 LYVNNLPYSATAIEIAELFGTKPELivLPKRRMRDeATGKlfmsdtlNRGIAFVTFEGlTSDIADKRDELQGRTLQDREL 260
                 8********************888634666788889777655555558********952355666677799999999987 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.1e-07   0.00095       3      60 ..      30      85 ..      28     114 .. 0.82
   2 ?   -1.5   0.0      0.61   2.8e+03       5      58 ..     182     237 ..     180     243 .. 0.62

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 2.1e-07
       RRM_7  3 kvFvGGlPiDiteeelkatfk.efgkvlvdwPkkaeskkkaaenskaakgyvflvfede 60
                 +FvG +  + t e+l++ fk efg+v +d P+k++++k+ +    +a+ ++ ++f +e
  CCD26194.1 30 TIFVGNVAHEATVEDLENVFKdEFGSVEIDLPNKEHHNKAGH---APASKHALVIFPQE 85
                69******************857***********99988865...45666777788766 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.61
       RRM_7   5 FvGGlPiDiteeelkatfkefgkvlvdwPkkaeskkkaae...nskaakgyvflvfe 58 
                 +v  lP   t  e+ + f++  +++v  Pk+   ++++ +   + + ++g +f+ fe
  CCD26194.1 182 YVNNLPYSATAIEIAELFGTKPELIV-LPKRRMRDEATGKlfmSDTLNRGIAFVTFE 237
                 56667888888888888887666655.676643333333334455556777887776 PP

>> RRM_Rrp7  Rrp7 RRM-like N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0026        12      60      91 ..      31      61 ..      25      96 .. 0.88
   2 ?    6.3   0.0    0.0018       7.9      32     103 ..     169     249 ..     165     270 .. 0.71

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0026
    RRM_Rrp7 60 kffqkvalgatiesvvsslltdeqedvsidlt 91
                 f+++va +at+e++   +++de+  v+idl 
  CCD26194.1 31 IFVGNVAHEATVEDL-ENVFKDEFGSVEIDLP 61
                578999999999999.8999999999999985 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0018
    RRM_Rrp7  32 qtknndeessrslFlvNlPiettletlkkffqkv.......algatiesvvsslltdeqe..dvsidltkltsdlelkdee 103
                 +t ++ e+s+ +l++ NlP  +t  ++ + f++        +   + e+    ++ d+ +  +  +    ltsd+ +k++e
  CCD26194.1 169 DTLDEMERSKDTLYVNNLPYSATAIEIAELFGTKpelivlpKRRMRDEATGKLFMSDTLNrgIAFVTFEGLTSDIADKRDE 249
                 5667778899*********************99887777764444444444445555543115677778888888875544 PP

>> Caprin-1_C  Cytoplasmic activation/proliferation-associated protein-1 C term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   8.6    0.0019       8.4     249     280 ..     130     159 ..      91     167 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0019
  Caprin-1_C 249 fynsRgvvRggarngRglingYrgpsngfkgG 280
                 f   R+  Rgg r+gRg   ++rg  +gf+gG
  CCD26194.1 130 FRGGRAGFRGGLRGGRG--GSFRGGRGGFRGG 159
                 34445555555555555..3555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1044  (0.0582297); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2195.31
//
Query:       CCD26195.1  [L=256]
Description: hypothetical protein NDAI_0H00210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-23   81.1   0.2    6.2e-23   80.4   0.2    1.4  1  Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 famil
    0.00069   19.7   0.0     0.0011   19.0   0.0    1.3  1  RNase_P_pop3    RNase P subunit Pop3


Domain annotation for each model (and alignments):
>> Ribosomal_L7Ae  Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.2   6.9e-27   6.2e-23       8      88 ..     124     205 ..     117     211 .. 0.85

  Alignments for each domain:
  == domain 1  score: 80.4 bits;  conditional E-value: 6.9e-27
                     HHHHHHTEEEESHHHHHHHHHTTTESEEEEETTSSSGGHHHHHHHHHHHTTEEEEEESCHHHHHHHTTSSSE.CSEEEEEES CS
  Ribosomal_L7Ae   8 kkakkagklvlGlkevtkalergeaklvilAedvepeekkkllealckekevpyvkvkskkeLGelvgkkrp.vsalaikde 88 
                     +++ k+  ++ Gl++v+ ++e+++aklv++A+dv+p+e + +l+alck+++vpy +vk+k++LG+lv++k+  v+al+ +  
      CCD26195.1 124 EASPKPYAVKFGLNHVVSLIENKKAKLVLIANDVDPIELVIFLPALCKKMGVPYAIVKGKARLGTLVNQKTSaVAALTEVRS 205
                     56678889**************************************************************764444444433 PP

>> RNase_P_pop3  RNase P subunit Pop3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.2e-07    0.0011      49     143 ..     125     225 ..     102     232 .. 0.70

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.2e-07
  RNase_P_pop3  49 keneeseltvglneivelLecsesddvvllvcnkDtPsvLlsqlpllvavanlt..........vklvqlpksaqakldeklGlskagmllvrkdas 135
                      ++  + +gln +v l+e +++++ vl++ + D P  L+  lp l++   +            +lv+  +sa a l e+   s++++ l +  ++
    CCD26195.1 125 ASPKPYAVKFGLNHVVSLIE-NKKAKLVLIANDVD-PIELVIFLPALCKKMGVPyaivkgkarlGTLVNQKTSAVAALTEV--RSEDEAALGKLVST 217
                   5567889*************.77777777777777.************998776445555555555666666666666666..55556666666666 PP

  RNase_P_pop3 136 ldkklakl 143
                   +d ++a++
    CCD26195.1 218 IDANFADK 225
                   66666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       660  (0.0368119); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2029.59
//
Query:       CCD26196.1  [L=810]
Description: hypothetical protein NDAI_0H00220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-67  226.7   0.1    9.9e-67  224.5   0.1    2.1  2  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
    2.6e-48  164.7   0.0    8.1e-41  140.2   0.0    2.9  2  FGGY_N    FGGY family of carbohydrate kinases, N-terminal dom
  ------ inclusion threshold ------
       0.11   12.1   0.2          6    6.5   0.0    3.1  3  HTH_24    Winged helix-turn-helix DNA-binding


Domain annotation for each model (and alignments):
>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.24   1.4e+03      43      75 ..     377     410 ..     356     437 .. 0.63
   2 !  224.5   0.1   1.7e-70   9.9e-67       1     198 []     523     727 ..     523     727 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.24
      FGGY_C  43 siavagslvawlldnlglreeirdagev.eesla 75 
                 s+++ +s ++wll+n  l  +  ++g+  +++l+
  CCD26196.1 377 STYFSSSKLKWLLNNEPLVLKAYNEGDLmFGTLD 410
                 5677777789999998664444444444455555 PP

  == domain 2  score: 224.5 bits;  conditional E-value: 1.7e-70
      FGGY_C   1 akvslGTssflll.vgtkpvisehglltpva.......gedgkpeyalegsiavagslvawlldnlglreeirdageveeslaelaaaeavadaggvvf 91 
                 ak+++GT++fll+ +g++++ se+g+lt+ a       ged+kp++alegsiav g++v+wl+dnl+l   i ++++v ++la     + v d+ggvvf
  CCD26196.1 523 AKCTYGTGCFLLYnTGKEKLTSENGALTTPAywfpnlsGEDSKPHFALEGSIAVGGAVVQWLRDNLRL---IPKSEHV-GPLA-----SRVRDSGGVVF 612
                 79************************999999*********************************999...*******.****.....9********** PP

      FGGY_C  92 vpafsglrapywdpdargtitglsssttlahiarAaleavalqlrailealekd......sgkpldrlavdGGgskndllmqllAdilg..vpVerpkt 182
                 vpaf+gl+apywdpd+r+ti+g+s+stt++hiarAa+e+v++q+rail+a++ d      ++  + +l vdGG+sk+d +mq++Adilg  ++++r + 
  CCD26196.1 613 VPAFNGLFAPYWDPDTRATIMGISQSTTASHIARAAIEGVCFQVRAILKAMSGDkiedgyEKGTVVTLSVDGGMSKSDEVMQIQADILGpcIKLRRSPI 711
                 ***************************************************8888887777777*********************************** PP

      FGGY_C 183 aeatalGaAilAavaa 198
                  e+talGaAi+A++a+
  CCD26196.1 712 VECTALGAAIAANMAY 727
                 **************95 PP

>> FGGY_N  FGGY family of carbohydrate kinases, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     3e-08   0.00018       2      38 ..     124     160 ..     123     165 .. 0.91
   2 !  140.2   0.0   1.4e-44   8.1e-41      23     245 .]     256     514 ..     250     514 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 3e-08
                 EEEEEEESSEEEEEEEETTS-EEEEEEEE--EB-SST CS
      FGGY_N   2 ilglDcGttstkaivldekgkvvasaqaelelsspke 38 
                 i ++D+Gtts+++i++++ g+ v+++q+e+ +s  ke
  CCD26196.1 124 IASIDVGTTSSRVILFNKIGQEVEKHQIEYSTSASKE 160
                 678***************************9998877 PP

  == domain 2  score: 140.2 bits;  conditional E-value: 1.4e-44
                 EEEEEEEE--EB-SSTT--EE-HHHHHHHHHHHHHHHHHHC..........T.-GCCEEEEEEEE-SS-EEEEETTT.EESSE.EE-TT--TTHHHHHH CS
      FGGY_N  23 vvasaqaelelsspkegwaeqdpeeiwqalaeairkvleqa..........gisekqikaIgisgqreglvllDknd.kpLyn.ailwkdrrtaeivek 109
                 ++ + +   +l +p++gw + +p+ ++  +++++ ++++            +++  ++  Igi++ re+++++ k++  p+ n  ilw+d+r  +i+++
  CCD26196.1 256 IATHLSSGPTLTYPRPGWIQCNPMTLLINIIQCLGSTIKSIskvnkyretnNLPLYKVHCIGITNMRETTFVWSKKTgLPIVNyGILWNDTRNLKIIKH 354
                 5566667778999*********************9999998899999***9**************************97776626************** PP

                 HHH...TTCHCCHHHHHSS-S.STTSHHHHHHHHHHHSCCHHCCHC....EEEEHHHHHHHHHCT..--EEEHHHHCTTTSEETTTTEE-HHHHHHTT- CS
      FGGY_N 110 lke...egnekklyektglvl.stgftlsklkWlkenepevfekie....kflliddyLiwrLtg..qfvtdvtnasesmlfnikklewdeellailgi 198
                 l+e   ++ +k l++ktgl+l st+f+ sklkWl++nep v+++ +    +f++ d+++i+ Lt    fvtdvtnas+++++ni++l++d+ell + g+
  CCD26196.1 355 LQEstpNVVQKMLAKKTGLPLfSTYFSSSKLKWLLNNEPLVLKAYNegdlMFGTLDTWIIYNLTPnkTFVTDVTNASRTGFMNIETLQYDNELLSFWGL 453
                 ***8877889999******973689********************99*****************9889******************************* PP

                 -GG..GS-EEE-TCCEEEEEECCCCCCTT.............S-EEEEEEEEEHHHHHHHH CS
      FGGY_N 199 pee..lLPklvesseiigelkpelaaklGl............kegvpvvggggDqqaaalG 245
                 +++   LPk+v+s+e +g  k+   +k  +              ++p+ g+ gDq a+++G
  CCD26196.1 454 DPNliNLPKIVSSAEYYGDFKIPRFTKNFIapdiwneltnfqAVKIPIQGCIGDQTASLVG 514
                 ***999*************998876654331111111111113478999999999998887 PP

>> HTH_24  Winged helix-turn-helix DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.21   1.2e+03       3      20 ..      22      39 ..      20      40 .. 0.84
   2 ?    6.5   0.0     0.001         6       2      30 ..     345     374 ..     344     375 .. 0.92
   3 ?    1.4   0.0     0.039   2.3e+02      24      40 ..     630     646 ..     630     651 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.21
      HTH_24  3 etdrkILelLqknprisq 20
                +t  k+++ Lq++p +++
  CCD26196.1 22 KTSSKVINSLQRKPVLTY 39
                567799********9886 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.001
      HTH_24   2 detdrkILelLqk.nprisqreLAerlglS 30 
                 d   +kI++ Lq+  p+  q+ LA+++gl+
  CCD26196.1 345 DTRNLKIIKHLQEsTPNVVQKMLAKKTGLP 374
                 56779***********************96 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.039
      HTH_24  24 AerlglSpstvnrrlkr 40 
                 A   g+S+st+  ++ r
  CCD26196.1 630 ATIMGISQSTTASHIAR 646
                 5678**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       789  (0.0440069); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 5835.03
//
Query:       CCD26197.1  [L=722]
Description: hypothetical protein NDAI_0H00230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-72  242.4   6.2      6e-72  242.0   6.2    1.2  1  MIP       Major intrinsic protein


Domain annotation for each model (and alignments):
>> MIP  Major intrinsic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.0   6.2   3.3e-76     6e-72       4     227 .]     256     535 ..     251     535 .. 0.95

  Alignments for each domain:
  == domain 1  score: 242.0 bits;  conditional E-value: 3.3e-76
                 CHHHHHHHHHHHHHHHHHHHHHHH..HHHCCCSSCS.............................SSSTTSS.HHHHHHHHHHHHHHHHHHHHHHH..C CS
         MIP   4 svkflravlAEflatlllvfigvg..salnvkkkvs.............................slaslvs.vtleavalafglalavlvylaag..i 68 
                 + + l+++lAEfl+t++++++g++  +++nv+ k +                             +l s+vs +t++++ l++g+a++++++ a+g  i
  CCD26197.1 256 KQSYLKEFLAEFLGTMVMILFGTAvcVQVNVSGKLQqnnfndalyklssnntinantvetfqtlqNLVSSVSgGTFDDIPLGWGAAVVMGYFSAGGsaI 354
                 45669*******************545555555555***********************999887666666689*********************99** PP

                 HT-S-SHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH...........HHHTTTTSSSSSTTSSHHHHHHHHHHHHHHHHHHHHHHC CS
         MIP  69 SGaHlNPavTlallvarkisllrailYivaQllGaivaaallklltkgl...........esraglfanslkpglsagqalvvEiiltfvLvlvvfalt 156
                 SGaHlNP++Tla+l++r +++++ ++Yi +Q+lG++++a++l++ +k++           es+ ++f++++kp ls+++++++E+i t++L++++falt
  CCD26197.1 355 SGAHLNPSITLANLMYRGFPIKKLPYYIGGQMLGGFAGALILFIYYKKVlmyayddwwmnESVINMFVTVPKPFLSTARQFTSEFITTAALQAGIFALT 453
                 *************************************************************************************************** PP

                 STTSSSSTCHGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTH............STTTTHHHHHHHHHHHHHHHHH CS
         MIP 157 ddkrkvslgelaplaigllvaliilvgipltGaamNpArslgpavvlnk............fedhwvylvGPliGailgalvY 227
                 d+++++s ++++pl++++l+++ +++++ +tG+a+N Ar+lgp+++l++            ++++w+++v+P++Ga+ g+l+Y
  CCD26197.1 454 DPYTCLS-SDVFPLMLFILIFILNASMGVQTGCAINMARDLGPRLALYAcgfdrkllweshHHYFWIPMVAPFVGALCGGLIY 535
                 *******.**************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1435  (0.0800379); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.30s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 4823.21
//
Query:       CCD26198.1  [L=222]
Description: hypothetical protein NDAI_0H00240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.9e-15   55.3   4.6    5.9e-15   55.3   4.6    2.2  2  V-SNARE_C     Snare region anchored in the vesicle membrane C
  ------ inclusion threshold ------
       0.01   16.3   3.4       0.01   16.3   3.4    2.2  2  Syntaxin-6_N  Syntaxin 6, N-terminal
      0.021   15.3   0.4      0.049   14.1   0.4    1.7  1  RseA_N        Anti sigma-E protein RseA, N-terminal domain
      0.055   13.8   2.3        1.2    9.5   0.1    2.5  2  U3snoRNP10    U3 small nucleolar RNA-associated protein 10
       0.14   12.5   5.4      0.075   13.3   2.4    2.1  2  DUF349        Domain of Unknown Function (DUF349)
       0.83    9.7   5.0       0.62   10.1   0.4    2.5  2  Ac76          Orf76 (Ac76)
        2.4    7.5  13.7        2.8    7.3   3.8    2.2  2  DUF3552       Domain of unknown function (DUF3552)
        4.1    7.8  15.5          5    7.6   4.6    2.9  3  DUF4200       Domain of unknown function (DUF4200)
          5    6.1  17.6         21    4.1  17.6    1.9  1  Atg14         Vacuolar sorting 38 and autophagy-related subun
        5.3    7.8   8.1         23    5.8   0.2    2.7  3  PMC2NT        PMC2NT (NUC016) domain


Domain annotation for each model (and alignments):
>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.5      0.81   1.4e+03      28      52 ..      78     102 ..      55     111 .. 0.66
   2 !   55.3   4.6   3.3e-18   5.9e-15       1      66 []     135     200 ..     135     200 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.81
   V-SNARE_C  28 ledLhsQretLkrarsklhnvanrl 52 
                 l++L++ +e L++  + ++n+ +++
  CCD26198.1  78 LSQLQRHKEILQDHWKNFRNIRSSI 102
                 6666666666666666666655554 PP

  == domain 2  score: 55.3 bits;  conditional E-value: 3.3e-18
   V-SNARE_C   1 erllresdrlknShrivdetisiGaailedLhsQretLkrarsklhnvanrlgksnsiLrsikrRv 66 
                 e++++es+r+++S++++d++is++ +++++++ Q   L +a+++++++ +r++  n+++ +i++R+
  CCD26198.1 135 EYIQNESRRIDQSNNVLDRLISQAFETRDQFQNQSVLLHNANNRILQTLQRIPGLNHVIAKINTRR 200
                 789*************************************************************96 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.3   3.4   5.8e-06      0.01       3      91 ..       6      91 ..       5      99 .. 0.91
   2 ?    3.2   3.6     0.072   1.3e+02       3      85 ..      95     176 ..      93     190 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 5.8e-06
  Syntaxin-6_N  3 FfevkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrrafveev 91
                  F+ v+ ++ +  +++es ++r++   ++tss+ + + + + ++++k+l + ++ ++ L++ v   +knp+  + + ++l+r+++++++ 
    CCD26198.1  6 FVTVRGQIISLESQTESSLSRYSTFAQTTSSQANGDEKALDEQIEKKLYKRQEIIDSLDKIV---QKNPNISSSKLSQLQRHKEILQDH 91
                  8889999999999**********99999999889999***********************99...*******************99876 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.072
  Syntaxin-6_N   3 FfevkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpskfkidekelsrrr 85 
                   F ++++ +q++ n+++ l++  +++ + +++ t++   + ++ ++++ r i++  + L++ ++ + + +++f+ ++  l++ +
    CCD26198.1  95 FRNIRSSIQQERNRLNLLFSVKTDIAQHNNK-TNDPATNENEYIQNESRRIDQSNNVLDRLISQAFETRDQFQNQSVLLHNAN 176
                   6778999999999999999999988887776.589999999999999999999999999999877776777766665555555 PP

>> RseA_N  Anti sigma-E protein RseA, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.4   2.7e-05     0.049      20      77 ..      78     133 ..      70     159 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2.7e-05
      RseA_N  20 ieelaq.dkelqqtWarYhligdvlRgeapevleldiaervaaaLeaEpahlalkaape 77 
                 +++l++  + lq++W+++  i++ +++e +    l++  +v++ +++ + +++  a +e
  CCD26198.1  78 LSQLQRhKEILQDHWKNFRNIRSSIQQERN---RLNLLFSVKTDIAQHNNKTNDPATNE 133
                 4455540455899***************75...88888899999988887777665544 PP

>> U3snoRNP10  U3 small nucleolar RNA-associated protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.2     0.043        77      68     105 ..      32      72 ..      12      81 .. 0.74
   2 ?    9.5   0.1    0.0007       1.2      71     115 ..     166     212 ..     144     213 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.043
                 HHHHT-S...S-S--HHHHHHHTTSTTHHHHHHHHTTTS-- CS
  U3snoRNP10  68 vlaqsqs...akllpkkvlkallklpsladvLeelskeyrv 105
                 +  +sq    +k l +++ k+l k++++ d+L ++ +++ +
  CCD26198.1  32 QTTSSQAngdEKALDEQIEKKLYKRQEIIDSLDKIVQKNPN 72 
                 33344446656669*********************999865 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0007
                 HT-S..S-S--HHHHHHHTTSTTHHHHHHHHTTTS--HHHHHHHHHH CS
  U3snoRNP10  71 qsqs..akllpkkvlkallklpsladvLeelskeyrvdkfllallks 115
                 q+qs   ++ ++++l++l ++p+l+ v++++++ ++ ++f+la + +
  CCD26198.1 166 QNQSvlLHNANNRILQTLQRIPGLNHVIAKINTRRKKNAFILATVTT 212
                 5555444447899*****************************98876 PP

>> DUF349  Domain of Unknown Function (DUF349)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.4   4.2e-05     0.075      15      71 ..      36      97 ..      25     101 .. 0.72
   2 ?   -1.5   0.0       1.9   3.3e+03       9      22 ..     154     167 ..     137     176 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.2e-05
      DUF349 15 errkahfeeqdaereenlekKealieeaealaksttdwksa.....tkrlkelqeeWkeiGp 71
                 + +   +++d++ e+ l k++++i+ + ++ +++ +++s+      +  + lq+ Wk+  +
  CCD26198.1 36 SQANGDEKALDEQIEKKLYKRQEIIDSLDKIVQKNPNISSSklsqlQRHKEILQDHWKNFRN 97
                5566677999*********************8875544444455524444457999999766 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.9
      DUF349   9 acdafferrkahfe 22 
                 ++ ++fe r+++++
  CCD26198.1 154 LISQAFETRDQFQN 167
                 55667777777665 PP

>> Ac76  Orf76 (Ac76)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.4   0.00035      0.62      51      80 ..      41      70 ..      29      75 .. 0.83
   2 ?    0.7   0.4      0.31   5.5e+02      15      39 ..     195     219 ..     189     221 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00035
        Ac76 51 tpadlytekakkikKkrdledafDailNKN 80
                + + l  +  kk+ K++++ d +D i+ KN
  CCD26198.1 41 DEKALDEQIEKKLYKRQEIIDSLDKIVQKN 70
                5667888889*******************9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.31
        Ac76  15 fildkneklsellltllllfvlFii 39 
                  i  + +k   +l t+  l++lF++
  CCD26198.1 195 KINTRRKKNAFILATVTTLCILFLF 219
                 5555666666677788888888875 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   4.8     0.014        24      67     138 ..      47     104 ..      32     114 .. 0.54
   2 ?    7.3   3.8    0.0016       2.8      54     128 ..     111     185 ..     103     199 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.014
     DUF3552  67 eelekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeeeleelveeqrq 138
                 e              ++ek+l +++e +d  ++ ++k  +  ++k ++l+++++ l+   ++  ++ ++ +q
  CCD26198.1  47 E--------------QIEKKLYKRQEIIDSLDKIVQKNPNISSSKLSQLQRHKEILQDHWKNFRNIRSSIQQ 104
                 3..............456666666666666666666665555666666666666555554444433322222 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0016
     DUF3552  54 alleakeeihklreelekelkerrnelqrlekRllqkeetLdrkeeslekkeesleekekelkqkeqsleekeee 128
                  l  +k +i +  +++++  ++ ++ +q+  +R+ q ++ Ldr  ++  +  ++++++   l++ ++++ ++ ++
  CCD26198.1 111 LLFSVKTDIAQHNNKTNDPATNENEYIQNESRRIDQSNNVLDRLISQAFETRDQFQNQSVLLHNANNRILQTLQR 185
                 5678999999*********************************99888888889999999999998888777665 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.6    0.0028         5      38     113 ..      15      88 ..       3      90 .. 0.81
   2 ?    4.8   5.6     0.021        37      18      95 ..      77     157 ..      67     173 .. 0.58
   3 ?   -0.3   0.0      0.74   1.3e+03      73     104 ..     177     208 ..     166     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0028
     DUF4200  38 kkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleeykkYeefL 113
                   e++ e +l ++  f +   ++ +  +k  +e+ ++k  k +ei +  ++i++ +  i+    kl ++++++e L
  CCD26198.1  15 SLESQTESSLSRYSTFAQTTSSQANGDEKALDEQIEKKLYKRQEIIDSLDKIVQKNPNISS--SKLSQLQRHKEIL 88 
                 66999*********************************************99998855543..3444444444444 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.021
     DUF4200  18 kkeeiqrleealkqreeelekkeqeleedllkfdkfl...kendakraralkkaeeerklkkekeaeikklkaeietlkse 95 
                 k  ++qr +e l+++++++++ ++ ++++ ++++       ++ +  ++ +  a +e++ +++  + i + ++ +++l s+
  CCD26198.1  77 KLSQLQRHKEILQDHWKNFRNIRSSIQQERNRLNLLFsvkTDIAQHNNKTNDPATNENEYIQNESRRIDQSNNVLDRLISQ 157
                 555666666666667776666666666666666644311134555555555555555555555555555555555555555 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 0.74
     DUF4200  73 klkkekeaeikklkaeietlkseiekleekle 104
                 +++ +  + i  l++ i++++++++k++ +l+
  CCD26198.1 177 NRILQTLQRIPGLNHVIAKINTRRKKNAFILA 208
                 55666677888899999999999999988776 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  17.6     0.012        21      27     137 ..      66     184 ..       4     214 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.012
       Atg14  27 lrerlaklksekeslkkkiekalegke.eaeqledkiknkkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklk.......kRrsd 117
                   +++ ++ s k s  ++ +++l+ ++ +  + ++ i++++++l++l s + d+ +++++ +d  ++ ++ i++ ++++ + ++ l        + r +
  CCD26198.1  66 IVQKNPNISSSKLSQLQRHKEILQDHWkNFRNIRSSIQQERNRLNLLFSVKTDIAQHNNKTNDPATNENEYIQNESRRIDQSNNVLDrlisqafETRDQ 164
                 556777888888888888888888888666778999999999999999999999999999999999999999999999999999998666666644444 PP

       Atg14 118 leslqneleerrkkqiaklq 137
                  +  +  l+++ ++++++lq
  CCD26198.1 165 FQNQSVLLHNANNRILQTLQ 184
                 44444445555555555555 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.013        23      28      80 ..      15      67 ..       8      73 .. 0.78
   2 ?    5.2   1.8      0.02        36      19      83 ..      93     158 ..      80     167 .. 0.72
   3 ?   -0.8   0.1       1.4   2.6e+03      28      43 ..     171     186 ..     152     205 .. 0.61

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.013
      PMC2NT 28 sldeqserllslinsllklaaskseisassklededdveekfksvvdvvDsll 80
                sl++q+e  ls  + +++ ++s+ +  ++  +e+ ++   k ++++d +D++ 
  CCD26198.1 15 SLESQTESSLSRYSTFAQTTSSQANGDEKALDEQIEKKLYKRQEIIDSLDKIV 67
                68899999999999999999999999666444455553348888999888875 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.02
      PMC2NT  19 rsldpefaksldeqserllslinsllklaaskseisassklededdvee...kfksvvdvvDsllEka 83 
                 +++ +++++s++++ +rl  l +  ++ a+ +++++++   ++ + +++   + ++  +v+D l+ +a
  CCD26198.1  93 KNF-RNIRSSIQQERNRLNLLFSVKTDIAQHNNKTNDP-ATNENEYIQNesrRIDQSNNVLDRLISQA 158
                 678.999**********988888777777777766665.33333333333348888888888887665 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 1.4
      PMC2NT  28 sldeqserllslinsl 43 
                  l + ++r+l+ ++++
  CCD26198.1 171 LLHNANNRILQTLQRI 186
                 4556666776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1928  (0.107535); expected 358.6 (0.02)
Passed bias filter:                      500  (0.0278878); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.31s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 1457.99
//
Query:       CCD26199.1  [L=282]
Description: hypothetical protein NDAI_0H00250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-33  115.1   0.1    2.8e-33  114.2   0.1    1.5  1  Fer2_3    2Fe-2S iron-sulfur cluster binding domain
      3e-09   37.3   7.8      3e-09   37.3   7.8    2.2  3  Fer4_17   4Fe-4S dicluster domain
    4.5e-08   33.4   8.3    4.5e-08   33.4   8.3    2.4  2  Fer4_8    4Fe-4S dicluster domain
      2e-07   31.0   4.1      2e-07   31.0   4.1    2.1  2  Fer4_10   4Fe-4S dicluster domain
    0.00037   20.4   3.4     0.0054   16.7   1.0    2.4  2  Fer2      2Fe-2S iron-sulfur cluster binding domain
     0.0019   18.8   6.1     0.0019   18.8   6.1    2.3  2  Fer4_7    4Fe-4S dicluster domain
  ------ inclusion threshold ------
      0.012   15.8   0.6       0.81    9.9   0.1    2.6  2  Fer4_18   4Fe-4S dicluster domain
      0.013   15.6   7.7      0.013   15.6   7.7    2.4  2  Fer4_9    4Fe-4S dicluster domain


Domain annotation for each model (and alignments):
>> Fer2_3  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.1   1.3e-36   2.8e-33       1     108 [.      51     157 ..      51     158 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.2 bits;  conditional E-value: 1.3e-36
      Fer2_3   1 tlkvkRfdprrdrgkqkvqeyeveae.eedtvldaLlkikeevdptlafrasCregiCGscavainGkptlaCtatikdlakqkseieleplpkfpvir 98 
                 t+k++R++p+++ +k+++q+++++ +  + +vldaLlkik+e+d++l+fr+sCregiCGsca++i G++tlaC  +i++ ++++  +++ plp++ v++
  CCD26199.1  51 TFKIYRWNPDKPVEKPHLQSFQIDLNnCGPMVLDALLKIKDEQDSSLTFRRSCREGICGSCAMNIGGRNTLACLCKIDQNESKD--LKIYPLPHMYVVK 147
                 699**********************999***************************************************88776..************* PP

      Fer2_3  99 DLvvDideml 108
                 DLv D ++++
  CCD26199.1 148 DLVPDLTNFY 157
                 ******9986 PP

>> Fer4_17  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.6       1.6   3.5e+03      45      45 ..     102     102 ..      50     116 .. 0.52
   2 ?   -2.6   1.0       3.8   8.4e+03      49      53 ..     108     112 ..     100     134 .. 0.66
   3 !   37.3   7.8   1.4e-12     3e-09       1      61 []     194     267 ..     194     267 .. 0.82

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.6
     Fer4_17  45 l 45 
                 +
  CCD26199.1 102 S 102
                 2 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 3.8
     Fer4_17  49 CgeCe 53 
                 Cg C+
  CCD26199.1 108 CGSCA 112
                 33332 PP

  == domain 3  score: 37.3 bits;  conditional E-value: 1.4e-12
     Fer4_17   1 rCiqCgyClpeCpsyeaydne...pkkllraakl..........glleeaekeekaslCieCgeCerkCPqgld 61 
                 +Ci C++C  +Cpsy+++++e   p+ l++a+++          ++++  e+++   +C+++ +C++ CP+gl+
  CCD26199.1 194 ECILCACCSTSCPSYWWNQEEylgPAVLMQAYRWlidsrdqatkARKTMLENSMSLYRCHTIMNCTKTCPKGLN 267
                 6****************9997777999**999999988876643233333445899***************996 PP

>> Fer4_8  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   9.7   0.00017      0.37      23      63 ..     171     207 ..     100     209 .. 0.56
   2 !   33.4   8.3     2e-11   4.5e-08       2      64 ..     192     265 ..     190     266 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
      Fer4_8  23 khlldargeaaedvqeeqvleeeealwsCttcgaCtevCpv 63 
                 ++++d ++  +      + +++ ++l++C  c +C++ Cp 
  CCD26199.1 171 EFPKDGKEVLQS----IEDRKKLDGLYECILCACCSTSCPS 207
                 333333333333....222233689**************95 PP

  == domain 2  score: 33.4 bits;  conditional E-value: 2e-11
      Fer4_8   2 lekCieCgaCqsaCp.............vlrrtkkhlldargeaaedvqeeqvleeeealwsCttcgaCtevCpvg 64 
                 l++Ci C +C ++Cp             vl +  ++l d+r++a++ +++++  e+  +l++C+t ++Ct+ Cp+g
  CCD26199.1 192 LYECILCACCSTSCPsywwnqeeylgpaVLMQAYRWLIDSRDQATK-ARKTML-ENSMSLYRCHTIMNCTKTCPKG 265
                 579***********87777777777775555566999999999998.555544.56899***************98 PP

>> Fer4_10  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.51   1.1e+03      36      52 ..      94     112 ..      80     114 .. 0.69
   2 !   31.0   4.1   8.9e-11     2e-07       8      56 .]     194     263 ..     189     263 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.51
     Fer4_10  36 eavrkkvekCtg..cgaCv 52 
                 +   +   +C +  cg+C+
  CCD26199.1  94 DSSLTFRRSCREgiCGSCA 112
                 5555566778877888885 PP

  == domain 2  score: 31.0 bits;  conditional E-value: 8.9e-11
     Fer4_10   8 tCirCgkCvkaCPadl.....................tsvgakgeaseeeavrkkvekCtgcgaCveaCP 56 
                  Ci C+ C ++CP+++                     ++++a+++++   +++  +++C+++ +C++ CP
  CCD26199.1 194 ECILCACCSTSCPSYWwnqeeylgpavlmqayrwlidSRDQATKARKTMLENSMSLYRCHTIMNCTKTCP 263
                 5********************************************************************9 PP

>> Fer2  2Fe-2S iron-sulfur cluster binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   1.0   2.4e-06    0.0054      23      76 ..      86     126 ..      68     133 .. 0.73
   2 ?    3.5   0.1     0.031        68       9      48 ..     171     206 ..     164     227 .. 0.74

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.4e-06
                 HH....H.TTTTTSTTSSSSSSSSTTEEEEEESCECTTSSSSTHHHHHTTEEEEGGGSE CS
        Fer2  23 ae....e.nggidipysCggggCgtClvevlegevqsdetelegeeldegklrlaCqti 76 
                 +     e +  + ++ sC++g Cg+C+  +             g++       laC ++
  CCD26199.1  86 LLkikdEqDSSLTFRRSCREGICGSCAMNIG------------GRN------TLACLCK 126
                 444444336689999************9877............665......3777776 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.031
                 EEEEETTTHBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEE CS
        Fer2   9 evevadgettlldaaeenggidipysCggggCgtClvevl 48 
                 e++ +dg+  +l+  e+ +++d  y+C    C+ C + + 
  CCD26199.1 171 EFP-KDGKE-VLQSIEDRKKLDGLYECI--LCACCSTSCP 206
                 454.46666.9999999779*******9..6777776655 PP

>> Fer4_7  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.8       1.7   3.8e+03      41      44 ..     108     111 ..      53     114 .. 0.63
   2 !   18.8   6.1   8.3e-07    0.0019       2      51 ..     195     265 ..     194     266 .. 0.66

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.7
      Fer4_7  41 CgaC 44 
                 Cg+C
  CCD26199.1 108 CGSC 111
                 4444 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 8.3e-07
      Fer4_7   2 CigCgaCvaaCpvkaieldeeenek..................gtekv....eidpekClgCgaCvavCPtg 51 
                 Ci C  C   Cp+++ + +e+  ++                   ++ +     ++  +C +  +C ++CP+g
  CCD26199.1 195 CILCACCSTSCPSYWWNQEEYLGPAvlmqayrwlidsrdqatkARK-TmlenSMSLYRCHTIMNCTKTCPKG 265
                 ***************9998744444333333333333332222212.23444777889************98 PP

>> Fer4_18  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00036      0.81      44      73 ..     178     207 ..     154     209 .. 0.81
   2 ?    3.4   0.0     0.037        82      43      75 ..     234     266 ..     222     278 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00036
     Fer4_18  44 kkalkekeerkekgagdcidcescvkvcPt 73 
                 ++ ++ ++++k +g  +ci c  c + cP 
  CCD26199.1 178 EVLQSIEDRKKLDGLYECILCACCSTSCPS 207
                 4455667778889999************96 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.037
     Fer4_18  43 ekkalkekeerkekgagdcidcescvkvcPtgi 75 
                 ++++ +++ ++++ +   c +   c k cP g+
  CCD26199.1 234 QATKARKTMLENSMSLYRCHTIMNCTKTCPKGL 266
                 3444455555667788899999********987 PP

>> Fer4_9  4Fe-4S dicluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.3      0.52   1.2e+03      35      43 ..     102     112 ..      76     115 .. 0.66
   2 ?   15.6   7.7     6e-06     0.013       1      49 [.     194     265 ..     194     266 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.52
      Fer4_9  35 aCig..CgaCv 43 
                 +C +  Cg+C+
  CCD26199.1 102 SCREgiCGSCA 112
                 56555688885 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 6e-06
      Fer4_9   1 kCtgCgaCveaCpagvv.vedaaerkarlraase......................eaCigCgaCveaCpkg 49 
                 +C+ C  C ++Cp+  + +e+  +  + ++a+++                       +C++ + C++ Cpkg
  CCD26199.1 194 ECILCACCSTSCPSYWWnQEEYLGPAVLMQAYRWlidsrdqatkarktmlensmslYRCHTIMNCTKTCPKG 265
                 5***********87766478888889999999999999******************99************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2028.32
//
Query:       CCD26200.1  [L=1939]
Description: hypothetical protein NDAI_0H00260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.2e-140  468.1  13.3   3.2e-140  468.1  13.3    4.1  5  Ecm29          Proteasome stabiliser
    1.1e-08   35.5   4.4    0.00032   21.2   0.0    6.2  7  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    2.6e-08   33.4   7.8       0.14   12.5   0.0    7.6  8  HEAT           HEAT repeat
     0.0009   19.7   0.1         25    5.5   0.0    5.7  6  HEAT_EZ        HEAT-like repeat
  ------ inclusion threshold ------
      0.024   14.5   2.7       0.27   11.1   0.0    4.3  5  TFCD_C         Tubulin folding cofactor D C terminal
       0.12   12.0   4.9        1.6    8.2   1.1    4.0  3  NopRA1         Nucleolar pre-ribosomal-associated protein 1


Domain annotation for each model (and alignments):
>> Ecm29  Proteasome stabiliser
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  468.1  13.3  1.1e-143  3.2e-140       1     497 []      20     558 ..      20     558 .. 0.96
   2 ?   -2.7   0.1      0.57   1.7e+03     238     279 ..     804     854 ..     774     903 .. 0.56
   3 ?   -1.9   0.1      0.33   9.9e+02      19      62 ..    1012    1062 ..    1010    1087 .. 0.74
   4 ?   -1.5   0.1      0.25   7.5e+02     236     303 ..    1251    1323 ..    1231    1410 .. 0.51
   5 !    7.3   0.0   0.00053       1.6     407     487 ..    1652    1732 ..    1610    1735 .. 0.84

  Alignments for each domain:
  == domain 1  score: 468.1 bits;  conditional E-value: 1.1e-143
       Ecm29   1 vekvelRlalAdtdekLeklLskfLpplLlklasphasvRkkVieilqhinkriksrpsikLPveaLlkqyke.........teasslvrnfsllyiek 90 
                 +ekvel+la+Ad+  k++++L+ fL+plLlkl+s h svRk+V++ l++i +r++++++ikLP+++Ll+q+++         +++s+ v ++sll i+k
  CCD26200.1  20 IEKVELKLAFADNSIKYQQNLDIFLAPLLLKLNSIHDSVRKAVFNSLKNILSRLNTSTDIKLPISKLLNQVHSqsqsqlqseNQESNQVILYSLLLISK 118
                 89*******************************************************************************988999************ PP

       Ecm29  91 gidRlsaeerkellpkllkgiskkps.qhqarlfnlllklLgklklpprgskedealkellglsdkpedakflleffldflllspskssesst...... 182
                 gidRls+ee+ +l+p++++gisk++s + +ar f++l+klL+++++p +g+ +++++ ++l+l d ++d++fll++f++f++l p+k+  ++t      
  CCD26200.1 119 GIDRLSNEEKHDLVPQVMNGISKLSSiSAKARTFHILCKLLLSWNPPLKGTPQEQDTITFLHLPD-SNDFQFLLNYFTKFFFLIPAKPD-PQTptiipr 215
                 **********************776658999********************************96.******************99886.555699999 PP

       Ecm29 183 ..scpGlsaaevkfltkkakvsalkkeeleetKlailkflasgaftdeerevlpallvasads.dssvsdraeelLKrlsvdledealvdkLfslflgs 278
                   +cpGls+++v+f+t++a++++ +k++l ++K +i+kf+++g++++++  ++ ++ v+s+d+ +ss+s++a ++ Krl+++ ed +++++L++l++g 
  CCD26200.1 216 gyTCPGLSKDDVSFFTYSAGITF-NKDQLLKFKWGIFKFVTNGFVSNDQV-LIKFISVVSTDQsSSSLSEAAIQFSKRLQIPHEDIDFIQYLIDLYTG- 311
                 9999****************866.99***********************7.**********985789*******************************. PP

       Ecm29 279 keeskispaspalrlkIlslLskSvlaaansfpaniqvifeslygsgless..KLrslllqFinwvarhgsske..............lkkiapvllsg 361
                 +++++i+p+++ l++kIl +L+ S++a++n  ++n+++i+    ++gl+ss  KLrsl+l+Fi++v+++++++               + +++ +++s 
  CCD26200.1 312 DKSNGIPPVNHFLQEKILIILNSSIVATSN--HKNVSKIC----SIGLNSShfKLRSLCLNFIRHVTKYNHMNLivqeqdaaentsedF-TLNINIASL 403
                 *************************99995..********....9***999********************888888889999999966.9******** PP

       Ecm29 362 lrklidsqgwpep.....eknssaseelrslaYealGlLakrapslvredlsliefLFdsLeeeesevrvsIqeALssllsafkeleseaskekLeell 455
                 +r++++++gwp+      ++ +s+++e+r+l+Ye+lG+++k++ +l+ +d+s+iefLFdsL ++ se+r+sIqeAL sl +++ +l + +skekL++l+
  CCD26200.1 404 IRNNLHAEGWPRLqlnssTPVFSTTLEQRRLQYETLGDILKKNLQLI-SDFSFIEFLFDSLIGDLSEFRSSIQEALLSLSHYLYKL-PPSSKEKLKKLA 500
                 ****************99999**************************.99***********************************9.999********* PP

       Ecm29 456 leylead................eeesaersvryvavkyanalfpfsdveaRyililA 497
                 ++yl++d                e+ ++ +svr++++k++na+fpf+d eaR+++i++
  CCD26200.1 501 RTYLQNDdklendpskssqqeskENVDSIMSVRFILIKFINATFPFDDQEARLFNIFG 558
                 ****999**************9999999***************************985 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.57
       Ecm29 238 vasadsdssvsdraeelLKrlsv.dledealvdkLfslflgs..........k 279
                 + s+ s ++vs+   +lL ++s  + ++++lv++L  l++ s           
  CCD26200.1 804 ITSSGSFDDVST--SQLLSKISNiPTDTTNLVSQLPVLYVSSyiiprlylrdM 854
                 344444455433..244444444477777777777777776555555555542 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.33
       Ecm29   19 klLskfLpplLlklasphasvRk.......kVieilqhinkriksrpsikL 62  
                  + L+++L  +L +  s+++s Rk        +++ l h  k+i+++++i L
  CCD26200.1 1012 QHLDTILDKVLKSCDSTKPSLRKasciwllSILQYLGHHPKVISQSSQIHL 1062
                  5689999999999*******9996666555667777777777777777776 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.25
       Ecm29  236 llvasadsdssvsdraeelLKrlsvdledealvdkLfslflgs.....keeskispaspalrlkIlslLskSv 303 
                  ll + ++++ +v +++ + L +l     +e++ d++ ++++       + ++ + +a ++  + + ++L +S+
  CCD26200.1 1251 LLTSMSNKEWRVREASTNALLQLIQTQPQEKFNDQILDIWTMGfrvmdDIKESVREAGTKFTTVLSKILARSI 1323
                  3333333333333333333333333222334444444444333333333344444444444444444444444 PP

  == domain 5  score: 7.3 bits;  conditional E-value: 0.00053
       Ecm29  407 lsliefLFdsLeeeesevrvsIqeALssllsafkeleseaskekLeellleyleadeeesaersvryvavkyan..alfpfsd 487 
                  l+l e L +sL + + + +  I +AL s++  f+e    +++++L++ +l+ ++++ + +++++v+ v++ yan  ++fp +d
  CCD26200.1 1652 LKLFEILNKSLIGRSWDGKDLIVDALVSITGKFDEF--VKNNNDLKQSILKTCNTEVSRNNDSYVKKVILSYANllKIFPEKD 1732
                  667777777888888888899************976..778************9999999*************9445666665 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.9   1.2e+04      25      55 ..      40      70 ..      29      91 .. 0.67
   2 ?   -2.1   0.0         2     6e+03      51      91 ..     757     801 ..     754     802 .. 0.69
   3 !    6.8   0.0    0.0035        11      20      88 ..    1008    1079 ..     998    1083 .. 0.87
   4 !   21.2   0.0   1.1e-07   0.00032      21      91 ..    1240    1311 ..    1230    1319 .. 0.88
   5 ?   -0.3   0.0      0.54   1.6e+03      21      70 ..    1334    1385 ..    1312    1401 .. 0.66
   6 ?    1.7   0.2      0.14   4.1e+02      19      59 ..    1478    1525 ..    1465    1552 .. 0.71
   7 ?   -2.5   0.0       2.7   8.1e+03      21      75 ..    1605    1660 ..    1596    1664 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.9
  Vac14_Fab1_bd 25 leeivkpvlkcfsDkdsrvRyyacEslynia 55
                   l+ +++p+l  ++   + vR  +  sl ni 
     CCD26200.1 40 LDIFLAPLLLKLNSIHDSVRKAVFNSLKNIL 70
                   5556666666666666666666666666654 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
  Vac14_Fab1_bd  51 lyniakvakgevlklln....eifdalvklvaDsdesvksgaell 91 
                    l  i k ++ ++l+ ++    ++f++l  + + +d+++   a++l
     CCD26200.1 757 LLTILKLSNVTILQSIQslvpDLFHYLEGIQTNTDKDLEICANVL 801
                    677888888888876541112789999888888888887777665 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0035
  Vac14_Fab1_bd   20 k.ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakg..evlkllneifdalvklvaDsdesvksga 88  
                     +  +++l++i++ vlk+++ +   +R  +c  l  i + + +  +v+++ ++i+  ++k +aD de ++++a
     CCD26200.1 1008 TfNDQHLDTILDKVLKSCDSTKPSLRKASCIWLLSILQYLGHhpKVISQSSQIHLRFMKFLADRDEFLQESA 1079
                     446799********************************97652379*******************9888776 PP

  == domain 4  score: 21.2 bits;  conditional E-value: 1.1e-07
  Vac14_Fab1_bd   21 ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlk.llneifdalvklvaDsdesvksgaell 91  
                     i++y+++i+k +l+++s k+ rvR  ++ +l  ++++  +e ++ ++ +i+++ ++++ D +esv+++   +
     CCD26200.1 1240 ISKYFDDILKELLTSMSNKEWRVREASTNALLQLIQTQPQEKFNdQILDIWTMGFRVMDDIKESVREAGTKF 1311
                     899******************************9999988877659********************998765 PP

  == domain 5  score: -0.3 bits;  conditional E-value: 0.54
  Vac14_Fab1_bd   21 ikeyleeivkpvl..kcfsDkdsrvRyyacEslyniakvakgevlkllneif 70  
                     +k++l+ i++ +l  k ++ + ++vR ++  +l  ++k + +++  +  e+ 
     CCD26200.1 1334 SKQILDMILPFLLgtKGLNSDAEEVRKFSLTTLIDLVKNTGTAIKPYAPELV 1385
                     6777777777777333466777889999999999999988887776666554 PP

  == domain 6  score: 1.7 bits;  conditional E-value: 0.14
  Vac14_Fab1_bd   19 kk....ikeyleeivkpvlkcfsDkdsrvRy.ya..cEslyniakvak 59  
                     k+    +k+y+ +++k+ +++++D+++ v   +a  +  +yni+ v k
     CCD26200.1 1478 KRygldLKSYTGKMLKVCMSMLDDRNESVNMaFAvtIGRIYNITGVDK 1525
                     4445558999****************9997534411467888876644 PP

  == domain 7  score: -2.5 bits;  conditional E-value: 2.7
  Vac14_Fab1_bd   21 ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlk.llneifdalvk 75  
                     ik yl+ei++ v + +  +d  +R   + s+  ++ ++ g+v + ++ ++f++l k
     CCD26200.1 1605 IKLYLNEILNLVSANIVSNDFGIRRSCAKSVSTLCHIIDGNVPEeQILKLFEILNK 1660
                     77899999999999999999999988888888888888887765467777777765 PP

>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.014        42       3      29 ..      46      71 ..      44      73 .. 0.87
   2 ?   -2.2   0.0       2.5   7.4e+03      10      17 ..     687     694 ..     685     695 .. 0.89
   3 !    5.3   0.1    0.0097        29       1      30 [.    1017    1046 ..    1017    1047 .. 0.91
   4 ?   -1.5   0.0       1.4   4.3e+03       5      26 ..    1064    1085 ..    1063    1089 .. 0.85
   5 !   12.5   0.0   4.7e-05      0.14       1      29 [.    1247    1275 ..    1247    1277 .. 0.88
   6 !    6.5   0.0    0.0041        12       6      30 ..    1348    1372 ..    1341    1373 .. 0.84
   7 ?   -1.3   0.0       1.3   3.8e+03       2      27 ..    1492    1517 ..    1491    1520 .. 0.79
   8 ?    0.4   0.0      0.36   1.1e+03       3      29 ..    1614    1640 ..    1612    1642 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.014
                HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT  3 PlllkllsDpspeVReaAakaLgalae 29
                Plllk l++ + +VR+a++++L ++++
  CCD26200.1 46 PLLLK-LNSIHDSVRKAVFNSLKNILS 71
                88999.699999************987 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.5
                 T-SSHHHH CS
        HEAT  10 sDpspeVR 17 
                 +D+++++R
  CCD26200.1 687 QDEDWSIR 694
                 8******9 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0097
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalaev 30  
                  +l+ +lk + ++ p+ R+a++  L  ++++
  CCD26200.1 1017 ILDKVLKSCDSTKPSLRKASCIWLLSILQY 1046
                  68899*******************999987 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 1.4
                  HHHHHT-SSHHHHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAakaLga 26  
                  ++k l D + +  e+Aa+ L  
  CCD26200.1 1064 FMKFLADRDEFLQESAARGLSL 1085
                  688999************9975 PP

  == domain 5  score: 12.5 bits;  conditional E-value: 4.7e-05
                  HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    1 llPlllkllsDpspeVReaAakaLgalae 29  
                  +l  ll+ +s ++++VRea+ +aL +l++
  CCD26200.1 1247 ILKELLTSMSNKEWRVREASTNALLQLIQ 1275
                  566788999****************9987 PP

  == domain 6  score: 6.5 bits;  conditional E-value: 0.0041
                  HHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT    6 lkllsDpspeVReaAakaLgalaev 30  
                   k l++++ eVR+ ++ +L +l+++
  CCD26200.1 1348 TKGLNSDAEEVRKFSLTTLIDLVKN 1372
                  5789******************986 PP

  == domain 7  score: -1.3 bits;  conditional E-value: 1.3
                  HHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT    2 lPlllkllsDpspeVReaAakaLgal 27  
                  l +++++l D + +V +a a ++g++
  CCD26200.1 1492 LKVCMSMLDDRNESVNMAFAVTIGRI 1517
                  668999*******9977777777776 PP

  == domain 8  score: 0.4 bits;  conditional E-value: 0.36
                  HHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT    3 PlllkllsDpspeVReaAakaLgalae 29  
                  +l+  ++ +++  +R+++ak++ +l+ 
  CCD26200.1 1614 NLVSANIVSNDFGIRRSCAKSVSTLCH 1640
                  55555555666679**********995 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       0.5   1.5e+03      28      55 .]      42      69 ..      35      69 .. 0.82
   2 ?   -0.0   0.0      0.44   1.3e+03      23      54 ..     863     895 ..     860     896 .. 0.83
   3 ?   -2.0   0.0       1.9   5.7e+03      25      50 ..    1013    1038 ..    1011    1044 .. 0.67
   4 ?    1.2   0.0      0.19   5.6e+02       3      40 ..    1075    1108 ..    1058    1115 .. 0.83
   5 ?    2.9   0.0     0.053   1.6e+02      22      52 ..    1240    1270 ..    1233    1273 .. 0.80
   6 !    5.5   0.0    0.0083        25      17      52 ..    1329    1366 ..    1316    1369 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.5
     HEAT_EZ 28 eilpaLlalLnddsdeVRaaAagaLgnl 55
                  l++Ll  Ln+ +d+VR+a+   L n+
  CCD26200.1 42 IFLAPLLLKLNSIHDSVRKAVFNSLKNI 69
                568889999***********99888775 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.44
     HEAT_EZ  23 qplvpeilpaLlalLnddsd.eVRaaAagaLgn 54 
                 +pl++ +++ L++ Ln+    + R++ +  +++
  CCD26200.1 863 KPLIKSLIDRLISSLNSTTTgSPRKTILKLISQ 895
                 58899**********998888888888777776 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 1.9
     HEAT_EZ   25 lvpeilpaLlalLnddsdeVRaaAag 50  
                  +++ il+  l+   + +++ R+a+++
  CCD26200.1 1013 HLDTILDKVLKSCDSTKPSLRKASCI 1038
                  56667777777777777799666664 PP

  == domain 4  score: 1.2 bits;  conditional E-value: 0.19
     HEAT_EZ    3 vRraAawaLGr.laggepellqplvpeilpaLlalLndd 40  
                  ++++Aa++L+   + g+++l +++++ +l+ +      d
  CCD26200.1 1075 LQESAARGLSLvYEIGNADLKETMIKGLLRSFT-----D 1108
                  789999999669888999999988888888777.....5 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.053
     HEAT_EZ   22 lqplvpeilpaLlalLnddsdeVRaaAagaL 52  
                  ++++ ++il++Ll  +++++ +VR+a+  aL
  CCD26200.1 1240 ISKYFDDILKELLTSMSNKEWRVREASTNAL 1270
                  6778899999999888555559999999888 PP

  == domain 6  score: 5.5 bits;  conditional E-value: 0.0083
     HEAT_EZ   17 gepellqplvpeilpaLl..alLnddsdeVRaaAagaL 52  
                  + p+  ++ ++ ilp+Ll  ++Ln+d  eVR+ ++ +L
  CCD26200.1 1329 VKPDKSKQILDMILPFLLgtKGLNSDAEEVRKFSLTTL 1366
                  456667778888999999*************9888777 PP

>> TFCD_C  Tubulin folding cofactor D C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.2       1.2   3.5e+03     120     160 ..      57      97 ..      47     141 .. 0.56
   2 ?   -3.1   0.0       1.9   5.8e+03      97     131 ..     472     505 ..     464     509 .. 0.80
   3 ?   -3.8   0.0       3.2   9.4e+03     106     136 ..     779     807 ..     774     818 .. 0.72
   4 ?   11.1   0.0     9e-05      0.27      76     133 ..    1240    1297 ..    1198    1342 .. 0.86
   5 ?   -1.6   0.0      0.66     2e+03     141     157 ..    1425    1441 ..    1416    1458 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.2
      TFCD_C 120 eeleslleeliklleenkkddRvvvPllktldlLlesgvle 160
                 +  + ++++l ++l++  ++  + +P+ k l++  +++  +
  CCD26200.1  57 SVRKAVFNSLKNILSRLNTSTDIKLPISKLLNQVHSQSQSQ 97 
                 34455556666666666666666666666666655444333 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.9
      TFCD_C  97 slvkassqaLleylkeleskadeeeleslleelik 131
                 s ++++  +L +yl +l+  +++e+l++l++++++
  CCD26200.1 472 SSIQEALLSLSHYLYKLPP-SSKEKLKKLARTYLQ 505
                 5567888899999999987.799999999998876 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 3.2
      TFCD_C 106 Lleylkeleskadeeeleslleeliklleen 136
                 L++yl+ +++  ++++  +++ +++++ ++ 
  CCD26200.1 779 LFHYLEGIQT--NTDKDLEICANVLAIITSS 807
                 8888888877..7777778888888777665 PP

  == domain 4  score: 11.1 bits;  conditional E-value: 9e-05
      TFCD_C   76 lpeyresvleGlvvSvGglteslvkassqaLleylkeleskadeeeleslleelikll 133 
                  +++y +++l+ l +S++     + +as++aLl++++++++++ ++++ ++ +  ++++
  CCD26200.1 1240 ISKYFDDILKELLTSMSNKEWRVREASTNALLQLIQTQPQEKFNDQILDIWTMGFRVM 1297
                  67899******************************88888777777766666555555 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 0.66
      TFCD_C  141 RvvvPllktldlLlesg 157 
                   ++ Pl++t+d L++++
  CCD26200.1 1425 VIASPLFETIDKLISKS 1441
                  5778*********9975 PP

>> NopRA1  Nucleolar pre-ribosomal-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.1   0.00055       1.6       4      85 ..      47     126 ..      44     148 .. 0.75
   2 ?   -2.3   0.1      0.93   2.8e+03       9      50 ..    1026    1068 ..    1018    1080 .. 0.76
   3 ?    2.1   0.0     0.041   1.2e+02       4      81 ..    1251    1325 ..    1248    1332 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00055
      NopRA1   4 lvlsLssedeeirrlAlavlskllasleesssfkektqlllllselletllask....seeeekeprlpslialflaralriltnP 85 
                 l+l L s ++++r++ ++ l+++l+ l++s+       ++l +s+ll+++  ++    ++e+++ +++  +  l++++ ++ l+n 
  CCD26200.1  47 LLLKLNSIHDSVRKAVFNSLKNILSRLNTST------DIKLPISKLLNQVHSQSqsqlQSENQESNQVILYSLLLISKGIDRLSNE 126
                 688999*********************8777......5666666666655544455577777778888888888888888777774 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.93
      NopRA1    9 ssedeeirrlAlavlskllasleesss.fkektqlllllsell 50  
                   s+++++r+++   l ++l+ l +  + +++++q+ l ++++l
  CCD26200.1 1026 DSTKPSLRKASCIWLLSILQYLGHHPKvISQSSQIHLRFMKFL 1068
                  5889999999999999999999655445777788887777765 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.041
      NopRA1    4 lvlsLssedeeirrlAlavlskllasleesssfkek..tqlllllselletllaskseeeekeprlpslialflaralri 81  
                  l+ s+s ++  +r++++++l +l+++  +++ f ++  +++ + +  + + ++   ++ +e   +++++++ +lar+++i
  CCD26200.1 1251 LLTSMSNKEWRVREASTNALLQLIQTQPQEK-FNDQilDIWTMGFRVMDD-IK---ESVREAGTKFTTVLSKILARSIDI 1325
                  67899********************996666.999887555555544444.33...234455567888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1939 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1161  (0.0647554); expected 358.6 (0.02)
Passed bias filter:                      488  (0.0272185); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.06u 0.31s 00:00:01.37 Elapsed: 00:00:00.46
# Mc/sec: 12805.69
//
Query:       CCD26201.1  [L=77]
Description: hypothetical protein NDAI_0H00270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-35  118.3   0.6    9.4e-35  118.2   0.6    1.0  1  ubiquitin    Ubiquitin family
    5.4e-17   61.4   0.7      6e-17   61.3   0.7    1.0  1  Rad60-SLD    Ubiquitin-2 like Rad60 SUMO-like
    4.1e-06   27.2   0.2    1.7e-05   25.2   0.2    1.8  1  Ubiquitin_2  Ubiquitin-like domain
     0.0011   19.3   0.0     0.0012   19.2   0.0    1.1  1  Ubiquitin_5  Ubiquitin-like domain
     0.0013   18.6   0.0     0.0014   18.5   0.0    1.2  1  TBK1_ULD     TANK binding kinase 1 ubiquitin-like domain
     0.0014   18.7   0.3        1.4    9.1   0.1    2.0  2  Ubiquitin_4  Ubiquitin-like domain
     0.0024   18.0   0.1     0.0052   16.9   0.1    1.6  1  Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
  ------ inclusion threshold ------
      0.017   15.7   0.1      0.019   15.5   0.1    1.1  1  DUF2407      DUF2407 ubiquitin-like domain
      0.018   14.9   0.0      0.021   14.7   0.0    1.1  1  Sde2_N_Ubi   Silencing defective 2 N-terminal ubiquitin domai


Domain annotation for each model (and alignments):
>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.2   0.6   4.7e-38   9.4e-35       1      72 []       3      74 ..       3      74 .. 0.99

  Alignments for each domain:
  == domain 1  score: 118.2 bits;  conditional E-value: 4.7e-38
                EEEEETTSEEEEEEEETTSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEESSC CS
   ubiquitin  1 itvktldgkkitleveesdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlrlr 72
                i+vktl+gk+itleve+sdt++++K ki++kegip++qqrLi++Gk+Led rtl++y+iq++stlhlvlrlr
  CCD26201.1  3 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
                9********************************************************************986 PP

>> Rad60-SLD  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.7     3e-20     6e-17       1      72 []       1      71 [.       1      71 [. 0.98

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 3e-20
                EEEEEEESSS--EEEEEETTSBHHHHHHHHHHHHT----TT-EEEETTEE--TTSBGGGSS--TTEEEEEEX CS
   Rad60-SLD  1 ikiilkgkdgkevkikVkptttvskLieayrkkkgipeeqkvrLiFDGeeLdpnstvedldiedgdtidvvi 72
                ++i++k+ +gk+++++V+++ t+ +++++ ++k+gip+ +++rLiF G++L++  t+ d+ i++++t+++v+
  CCD26201.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
                89************************************.******************************996 PP

>> Ubiquitin_2  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.2   8.3e-09   1.7e-05      14      80 ..      11      69 ..       1      70 [. 0.85

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 8.3e-09
                 SEEEEEEETTSBHHHHHHHHHHHH---TTCEEEEEE.-SSSSEEECSSGCCSBCCCCT--TTEEEEE CS
  Ubiquitin_2 14 vsserrfsksltieelKekLelitGtspasmrLqlyddkkdnevsklddddalLgsYgvkdgmrihV 80
                 +  +  +++s+ti+++K+k++   G++p+++rL +          k  +d ++L++Y+++  +++h 
   CCD26201.1 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHL 69
                 5566778999************************99........5667899***********99995 PP

>> Ubiquitin_5  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     6e-07    0.0012      33      93 ..      12      73 ..       4      76 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 6e-07
  Ubiquitin_5 33 kklletkLdvtgkelvskiaeefglkensiKlilngklleldktLeeQgvknnskv.mvLkl 93
                   +le++ + t +++ ski ++ g+  ++ +li  gk+le ++tL + +++++s + +vL+l
   CCD26201.1 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLhLVLRL 73
                 556777777788899999********9***********************999875467765 PP

>> TBK1_ULD  TANK binding kinase 1 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   7.1e-07    0.0014      19      53 ..      17      51 ..       3      71 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 7.1e-07
    TBK1_ULD 19 ihpyntvaifqeevakqTkiaaekQellfeghrll 53
                +++ +t++++  +++++  i++++Q l+f g++l 
  CCD26201.1 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
                6789****************************973 PP

>> Ubiquitin_4  Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.1   0.00068       1.4       1      33 [.       1      33 [.       1      37 [. 0.94
   2 !    8.3   0.0    0.0012       2.3      58      86 ..      43      70 ..      38      73 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00068
  Ubiquitin_4  1 lkvtvkkldgeslevvvkqnatvkdLkkaierk 33
                 +++ vk l g+++ ++v+++ t+ ++k  i+ k
   CCD26201.1  1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDK 33
                 7899*************************9975 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0012
  Ubiquitin_4 58 LsfegekLkddkaklkeygirnkselsFv 86
                 L+f g++L+ d  +l++y i+++s+l+ v
   CCD26201.1 43 LIFAGKQLE-DGRTLSDYNIQKESTLHLV 70
                 899999986.6789************976 PP

>> Rad60-SLD_2  Ubiquitin-2 like Rad60 SUMO-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1   2.6e-06    0.0052      12      87 ..      10      71 ..       1      74 [. 0.71

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.6e-06
                 S-EEEEEEEETT-BHHHHHHHHHHHS-TT-SSS--SCCCEEEEETTEEE-TTSBCCCCS-TTTTTTTS-EEEEEEE CS
  Rad60-SLD_2 12 GsDigpvkfsdaatvaelkekviaqWPkdkeekpksvndlklilaGkiLennktlkelrlplgevkggvtvmHvvv 87
                 G+ +  ++ ++++t++++k k+     +dke  p  +++ +li aGk Le+ +tl++++++        +++H+v+
   CCD26201.1 10 GK-TITLEVESSDTIDNVKSKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLVL 71
                 66.6667777888888888888.....4566634..34559****************965433......3566666 PP

>> DUF2407  DUF2407 ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.1   9.6e-06     0.019      14      64 ..      13      59 ..       4      72 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 9.6e-06
     DUF2407 14 leLdipdpntttvagLkqliRerlpaelasrrLrLIyaGrlLedttslass 64
                ++L+++  ++ t+ ++k  i ++    +   + rLI+aG+ Led  +l++ 
  CCD26201.1 13 ITLEVE--SSDTIDNVKSKIQDKE--GIPPDQQRLIFAGKQLEDGRTLSDY 59
                567776..7789999999999987..67777789*************9874 PP

>> Sde2_N_Ubi  Silencing defective 2 N-terminal ubiquitin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.0     1e-05     0.021       2      88 ..       2      76 ..       1      77 [] 0.85

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1e-05
  Sde2_N_Ubi  2 nvlvssfdgltlpstlsltlpstatvsdlvdklserlpeslkesliLttvsnkqlllssdvslssllassadsellslrllvrlrGG 88
                +++v+++ g+    t++l++ s+ t+ ++ +k++++      +   L  + + ql  ++  +ls++  ++++    +l+l++rlrGG
  CCD26201.1  2 QIFVKTLTGK----TITLEVESSDTIDNVKSKIQDKEGIPPDQ-QRLIFAGK-QL--EDGRTLSDYNIQKES----TLHLVLRLRGG 76
                899****996....999*****************998877555.45555554.66..99999****999999....99********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       537  (0.0299515); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.37u 0.24s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 601.48
//
Query:       CCD26202.1  [L=310]
Description: hypothetical protein NDAI_0H00280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-28   99.6   4.7    1.9e-28   99.0   4.7    1.3  1  ENTH      ENTH domain
  ------ inclusion threshold ------
      0.031   14.1   0.6       0.44   10.4   0.6    2.4  1  VHS       VHS domain


Domain annotation for each model (and alignments):
>> ENTH  ENTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   4.7   2.1e-32   1.9e-28       2     125 .]      13     148 ..      12     148 .. 0.92

  Alignments for each domain:
  == domain 1  score: 99.0 bits;  conditional E-value: 2.1e-32
                 -HHHHHHHHHTSSSSS.S--HHHHHHHHHHTTSHHHHHHHHHHHHHHH.......HH--GGGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGG. CS
        ENTH   2 seteskvreatnndpw.GpsnkllteiarltyskkelseiisvitkrL.......qnnkgkewrsvlKaLtlieYLlknGseqvidwlkenisiiktl. 91 
                 ++teskv++at+++++ G++++l++ei+ ltys k+l++ii+vi+krL       ++ ++k    ++K+Ltli+YL++nGs+++i+wl+ n ++++++ 
  CCD26202.1  13 TPTESKVKQATDDNETtGATGTLMNEISVLTYSPKTLKDIIQVIKKRLssatssnKKLSHKTSVYIIKTLTLISYLINNGSNEFIEWLRLNFYLVENIt 111
                 79*********988777*********************************99998889***********************************999984 PP

                 G..G---B-T.TS-B-HHHHHHHHHHHHHHHT-HHHH CS
        ENTH  92 s..efkyide.egkdeglniRkkakkiislledeerl 125
                 +  +f++ d+  +++++ +i+  a++ ++l+++e++l
  CCD26202.1 112 KkcNFQLQDNsADSKMIGQIKVIAEDMTNLINNENLL 148
                 2336899998788888889*************99875 PP

>> VHS  VHS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6   4.9e-05      0.44      45      80 ..      63      98 ..      10     150 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.9e-05
                HHHHHHHHT-SSHHHHHHHHHHHHHHHHHSHHHHHH CS
         VHS 45 vrlikkkinsknphvallaLklldalvkNcGskfhl 80
                + + +kk+++k++  ++ +L+l+ +l++N+ ++f++
  CCD26202.1 63 ATSSNKKLSHKTSVYIIKTLTLISYLINNGSNEFIE 98
                222345556666677899***********9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1296  (0.0722851); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.23s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2398.61
//
Query:       CCD26203.1  [L=715]
Description: hypothetical protein NDAI_0H00290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (715 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1225  (0.0683251); expected 358.6 (0.02)
Passed bias filter:                      320  (0.0178482); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.25s 00:00:00.90 Elapsed: 00:00:00.41
# Mc/sec: 5278.72
//
Query:       CCD26204.1  [L=635]
Description: hypothetical protein NDAI_0H00300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-06   28.0  21.7    2.5e-05   24.5   3.6    3.6  3  zf-C2H2      Zinc finger, C2H2 type
    7.4e-05   23.0   3.1    7.4e-05   23.0   3.1    3.1  3  zf-H2C2_2    Zinc-finger double domain
     0.0011   19.6   2.5     0.0011   19.6   2.5    3.5  3  zf-C2H2_4    C2H2-type zinc finger
     0.0045   16.9   2.6     0.0045   16.9   2.6    2.0  2  zf-C2H2_6    C2H2-type zinc finger
     0.0068   16.7   1.0      0.023   15.0   1.0    2.0  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
     0.0075   16.6   0.7      0.029   14.8   0.7    2.1  1  zf-met       Zinc-finger of C2H2 type
  ------ inclusion threshold ------
      0.032   14.7   6.5       0.12   12.8   6.5    2.1  1  zf-C2HE      C2HE / C2H2 / C2HC zinc-binding finger


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   1.4   2.4e-05      0.06       2      23 .]     187     211 ..     186     211 .. 0.93
   2 ?   -0.0   1.9      0.59   1.5e+03       9      23 .]     232     246 ..     223     246 .. 0.72
   3 !   24.5   3.6   9.6e-09   2.5e-05       1      23 []     252     274 ..     252     274 .. 0.99

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 2.4e-05
                 EET..TTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCp..dCgksFkrksnLkrHirt.H 23 
                 +C+  dC++sF+++++L  H++  H
  CCD26204.1 187 VCKwsDCHESFNQPDLLYLHLCQdH 211
                 79999***************99888 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.59
                 EESSHHHHHHHHHCC CS
     zf-C2H2   9 sFkrksnLkrHirtH 23 
                 +   +++ ++H+r+H
  CCD26204.1 232 KTDKRDHITSHLRVH 246
                 556788999999998 PP

  == domain 3  score: 24.5 bits;  conditional E-value: 9.6e-09
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 ++C+ C+k+Fkr+ +Lk+H++tH
  CCD26204.1 252 FQCSTCTKKFKRPQDLKKHLKTH 274
                 89********************9 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.9   7.5e+03      16      25 ..     187     198 ..     182     199 .. 0.77
   2 !   23.0   3.1   2.9e-08   7.4e-05       3      26 .]     240     263 ..     238     263 .. 0.93
   3 ?    2.0   0.4      0.13   3.3e+02       1      10 [.     266     275 ..     266     284 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.9
   zf-H2C2_2  16 eCp..lCdkaFk 25 
                  C+   C+ +F+
  CCD26204.1 187 VCKwsDCHESFN 198
                 677778**9997 PP

  == domain 2  score: 23.0 bits;  conditional E-value: 2.9e-08
   zf-H2C2_2   3 rrHirkHtgekpyeCplCdkaFkt 26 
                 + H+r+H + kp++C+ C k+Fk+
  CCD26204.1 240 TSHLRVHIPLKPFQCSTCTKKFKR 263
                 58********************96 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.13
   zf-H2C2_2   1 nLrrHirkHt 10 
                 +L++H+++H 
  CCD26204.1 266 DLKKHLKTHL 275
                 69*******6 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   1.4      0.34   8.7e+02       3      20 ..     188     207 ..     186     211 .. 0.79
   2 ?   -1.3   1.7       2.2   5.7e+03       6      23 ..     229     242 ..     222     246 .. 0.44
   3 !   19.6   2.5   4.3e-07    0.0011       1      23 [.     252     274 ..     252     275 .. 0.97

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.34
   zf-C2H2_4   3 Cpi..CgksFsskkaLlrHl 20 
                 C++  C++sF+ ++ L  Hl
  CCD26204.1 188 CKWsdCHESFNQPDLLYLHL 207
                 77777*****8887777685 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.2
   zf-C2H2_4   6 CgksFsskkaLlrHlkth 23 
                 C+    +k++ ++H+ +h
  CCD26204.1 229 CC----TKTDKRDHITSH 242
                 33....333334444444 PP

  == domain 3  score: 19.6 bits;  conditional E-value: 4.3e-07
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 f+C+ C+k F+++++L++Hlkth
  CCD26204.1 252 FQCSTCTKKFKRPQDLKKHLKTH 274
                 89********************9 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       2.4   6.3e+03       7      12 ..     193     198 ..     192     198 .. 0.89
   2 !   16.9   2.6   1.8e-06    0.0045       2      26 ..     252     276 ..     252     277 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.4
   zf-C2H2_6   7 CsksFp 12 
                 C++sF+
  CCD26204.1 193 CHESFN 198
                 9***96 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 1.8e-06
   zf-C2H2_6   2 heCsvCsksFpslqaLggHkksHrk 26 
                 + Cs+C k F+  q+L +H+k+H +
  CCD26204.1 252 FQCSTCTKKFKRPQDLKKHLKTHLE 276
                 89*********************75 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.0     9e-06     0.023       2      24 ..     252     274 ..     251     275 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 9e-06
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  f C +C K Fk  ++l++Hlk++
   CCD26204.1 252 FQCSTCTKKFKRPQDLKKHLKTH 274
                  66*******************97 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.7   1.1e-05     0.029       1      21 [.     252     272 ..     252     275 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
      zf-met   1 fyCelCnvtfnsesqlksHlq 21 
                 f+C+ C ++f+ +++lk Hl+
  CCD26204.1 252 FQCSTCTKKFKRPQDLKKHLK 272
                 89******************8 PP

>> zf-C2HE  C2HE / C2H2 / C2HC zinc-binding finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   6.5   4.8e-05      0.12      34      63 ..     248     276 ..     209     277 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 4.8e-05
     zf-C2HE  34 lktpLkCtrCganfgnkfpkLKeHLeeefe 63 
                   +p++C  C  + ++  ++LK+HL++++e
  CCD26204.1 248 PLKPFQCSTCT-KKFKRPQDLKKHLKTHLE 276
                 5589*******.888999**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2656  (0.14814); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        73  (0.00407162); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.51
# Mc/sec: 3762.34
//
Query:       CCD26205.1  [L=374]
Description: hypothetical protein NDAI_0H00310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.023   14.7  59.8      0.035   14.1  42.9    2.1  2  TFIIA          Transcription factor IIA, alpha/beta subunit
       0.27   11.2  36.1        1.5    8.8   4.1    2.5  2  Suf            Suppressor of forked protein (Suf)
        1.4    8.7   0.0        1.4    8.7   0.0    3.1  3  DUF501         Protein of unknown function (DUF501)
        1.7    8.5  36.4       0.37   10.7  28.1    2.3  2  SRP-alpha_N    Signal recognition particle, alpha subunit, N-
          2    8.6   4.4       0.46   10.6   0.5    1.9  2  AGH            Androgenic gland hormone


Domain annotation for each model (and alignments):
>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.9    0.0018       6.6     192     218 ..      18      42 ..       2      94 .. 0.44
   2 ?   14.1  42.9   9.8e-06     0.035      57     267 ..     129     342 ..     115     365 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0018
       TFIIA 192 qqqlekqqqqqqqqqqqqqqqqvqqqq 218
                 qqq  +qq+++qqqq+qqqqqq++ q+
  CCD26205.1  18 QQQ--QQQTPIQQQQSQQQQQQSKFQN 42 
                 111..1111222222222222222222 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 9.8e-06
       TFIIA  57 spqfvlqlpqslkqalqasaaaasqapastsqslpslvipagksvqslt.a....nssaataatfslpakleppvqipagvtlqtasgqlykvnvqasg 150
                 +++ v ql+q+l+++        + ++ + ++++ +l+i++ ++ q ++ +    n++++++++++ ++  e+  +    +  q   +  yk +  +s 
  CCD26205.1 129 KASLVSQLEQKLNSEII------ELNQLKRQEETEELIISEDQENQFFKdKllqlNNNNSNNMELNDKILKEYTDKF--KLRSQENTMVIYKDEFSSSL 219
                 33344444444433332......334455566667777777777777775578765555666666667777774444..44555555556666665555 PP

       TFIIA 151 aqqiaaqplqqvvqqsqgsaaqssvaalqaqsqqaqalaepqqqlekq............qqqqqqqqqqqqqqqvqqqqqeesqqaqqasqeqvagsq 237
                 +q   ++p +         a+++++a ++a+sq  q++ +++ qle+q            qqq qqqqqqqqqqq++qqqq  sqq+qq++q+q++++ 
  CCD26205.1 220 RQDTREAPTNYW---DDYFAIKKKLATMAAESQRRQTELQKNLQLEQQeelkrtqdelqkQQQNQQQQQQQQQQQMHQQQQ--SQQQQQQQQQQQPNQT 313
                 555555555444...334444444444444444444444444443333344444443322222222222222223333333..2222222122222233 PP

       TFIIA 238 vessqtdgaedaleeespv.legelsaeeea 267
                 +++++++g + al +  ++  +++  +++++
  CCD26205.1 314 NSAKEQSGTATALID--NMfDDFNSTENSTS 342
                 333344444433333..44322222222222 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.1   0.00041       1.5     219     259 ..       5      56 ..       1     104 [. 0.56
   2 ?    8.2  24.0   0.00061       2.2     140     259 ..     189     313 ..     126     343 .. 0.61

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00041
         Suf 219 espkkgaagrrleqqrksessksaeaasksqkalqqqpap...........l 259
                 ++p ++a+++   qq+++++++++++++++q++ + q+ p           l
  CCD26205.1   5 KKPRRSAHSKSFRQQQQQQTPIQQQQSQQQQQQSKFQNVPrvgpilqlnnsL 56 
                 4455555555556666666666666666666666666666334444444440 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00061
         Suf 140 dskleqfvdRYkl...knldpikkrelksetkqeeekallqkkeeqaaslees......................kvpqaqeskkrklesedss.vkkP 212
                 d+ l++ +d +kl   +n  +i k+e  s                       s                       ++ a es++r++e +++  +++ 
  CCD26205.1 189 DKILKEYTDKFKLrsqENTMVIYKDEFSS-----------------------SlrqdtreaptnywddyfaikkkLATMAAESQRRQTELQKNLqLEQQ 264
                 33333333333331112333344444444.......................04444455555555555555554566666667777666664468888 PP

         Suf 213 dklqmvespkkgaagrrleqqrksessksaeaasksqkalqqqpap..l 259
                 + l++++ + +  ++++++qq++++++  ++++s++q+++qqq++p  +
  CCD26205.1 265 EELKRTQDELQKQQQNQQQQQQQQQQQMHQQQQSQQQQQQQQQQQPnqT 313
                 8999998888888888877777777777778888788888888777441 PP

>> DUF501  Protein of unknown function (DUF501)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2      0.38   1.3e+03      71     103 ..      10      42 ..       4      51 .. 0.73
   2 ?    8.7   0.0    0.0004       1.4      14      73 ..      98     154 ..      90     184 .. 0.85
   3 ?    0.3  14.1      0.16   5.6e+02      45     105 ..     260     321 ..     251     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.38
      DUF501  71 kahaeyaakReellteeerselekseesselkd 103
                 +ah++  +++++  t++++++ ++++++s++++
  CCD26205.1  10 SAHSKSFRQQQQQQTPIQQQQSQQQQQQSKFQN 42 
                 678888888888888888888777777766655 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0004
      DUF501  14 ltaplrkklsrgkpfptlywLtcpelvkavsrLEaeglvkaleeklaedeelaqalekah 73 
                 lt+ l   ++++k+ pt ++ t+  ++  +++  ++ lv++le+kl+++    ++l+++ 
  CCD26205.1  98 LTTSL---VPNDKIIPTPLYFTDGVISTGIDNENKASLVSQLEQKLNSEIIELNQLKRQE 154
                 33444...69999*********************************98877777766655 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.16
      DUF501  45 rLEaeglvkaleeklaedeelaqalekahaeyaakReellteeerseleksees.selkdlg 105
                 +LE+++  k+ +++l+++++ +q+ ++++++ +++++++ +++++++ ++ ++  s+ +++g
  CCD26205.1 260 QLEQQEELKRTQDELQKQQQNQQQQQQQQQQQMHQQQQSQQQQQQQQQQQPNQTnSAKEQSG 321
                 79*********************999999999999999998888877665555523335544 PP

>> SRP-alpha_N  Signal recognition particle, alpha subunit, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   1.2     0.027        98     109     136 ..      14      39 ..       2      94 .. 0.49
   2 ?   10.7  28.1    0.0001      0.37      71     216 ..     210     352 ..     186     365 .. 0.47

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.027
                  XX........XXX..XXXXXXXXXX... CS
  SRP-alpha_N 109 kkskaakepkamksfeeskkskktvkss 136
                  k+ ++++++++  +++++++++++++s+
   CCD26205.1  14 KSFRQQQQQQT--PIQQQQSQQQQQQSK 39 
                  12122221111..222222222222222 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0001
                  HHGGGGGSS-S----TT................HHHHHHHHHHHHXXXXXXXXX........XXX..XXXXXXXXXX.....XX.XX........... CS
  SRP-alpha_N  71 lYkpklkpkttlvecak..............syFdeyFdqllrelEasaeaakkskaakepkamksfeeskkskktvksskedkkpegkkkkgakkek 154
                  +Yk+            +              +y+d+yF    + +  +ae+++++ +    +++ ++e++++ k+t+++ +++++ ++++++++++  
   CCD26205.1 210 IYKD------------EfssslrqdtreaptNYWDDYFAIKKKLATMAAESQRRQTE---LQKNLQLEQQEELKRTQDELQKQQQNQQQQQQQQQQ-- 290
                  3444............23333344444444367*****8666666666665555444...344456666666666666665555332222222222.. PP

                  XX.XXXXX...XXXXXXXXXXXXXXXXX.XXX.XXXXXXXXXXXXXX..XXXXXXXXXXX... CS
  SRP-alpha_N 155 da.sddstpsatpetsrpstpsglltakeagptaedvsrrarkkankkrssagassgdeakas 216
                   + +++++ +++++++++++p+++ +ake++ ta +++      +n++++s++++ +++++ +
   CCD26205.1 291 -QmHQQQQSQQQQQQQQQQQPNQTNSAKEQSGTATALIDNMFDDFNSTENSTSNTGNSNSNGK 352
                  .12222222333344455555565666656666777777777777754433332222222211 PP

>> AGH  Androgenic gland hormone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   0.00013      0.46      40      99 ..     148     214 ..     133     228 .. 0.75
   2 ?   -2.5   0.2       1.5   5.4e+03      41      79 ..     281     319 ..     263     343 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00013
         AGH  40 nrekrsadedellfeededddffhpralsipsavesgde.......keedelsllsrskreiafhee 99 
                 n+ kr  + +el++ ed++++ff+ + l+++++  +  e       +  d++ l s+ +  + +++e
  CCD26205.1 148 NQLKRQEETEELIISEDQENQFFKDKLLQLNNNNSNNMElndkilkEYTDKFKLRSQENTMVIYKDE 214
                 7889999**********************98877666554444554445666666666666655555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.5
         AGH  41 rekrsadedellfeededddffhpralsipsavesgdek 79 
                 ++++  +++++++++++ ++  + +  + p++ +s +e+
  CCD26205.1 281 QQQQQQQQQQQMHQQQQSQQQQQQQQQQQPNQTNSAKEQ 319
                 444444444444444444444444444445555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      6265  (0.349434); expected 358.6 (0.02)
Passed bias filter:                     1046  (0.0583412); expected 358.6 (0.02)
Passed Vit filter:                       552  (0.0307881); expected 17.9 (0.001)
Passed Fwd filter:                       175  (0.00976072); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.98u 0.41s 00:00:02.39 Elapsed: 00:00:00.59
# Mc/sec: 1919.84
//
Query:       CCD26206.1  [L=1034]
Description: hypothetical protein NDAI_0H00320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.7e-13   48.9   0.4    1.2e-12   48.1   0.4    1.3  1  Phosphodiest   Type I phosphodiesterase / nucleotide pyrophos
  ------ inclusion threshold ------
      0.039   13.3   1.6      0.043   13.2   0.5    1.5  2  Metalloenzyme  Metalloenzyme superfamily
      0.065   12.6   0.1       0.13   11.7   0.1    1.5  1  Sulfatase      Sulfatase
       0.13   12.2   0.0       0.24   11.3   0.0    1.4  1  ACT_3          ACT domain


Domain annotation for each model (and alignments):
>> Phosphodiest  Type I phosphodiesterase / nucleotide pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.4   2.7e-16   1.2e-12     137     279 ..     220     352 ..     132     370 .. 0.75

  Alignments for each domain:
  == domain 1  score: 48.1 bits;  conditional E-value: 2.7e-16
                   .CSTTSCHHH.HHHHHHHHHHHHCHTHSHHHHHCT.SSESEEEEEECCCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTTGTTTEEEEEEES CS
  Phosphodiest 137 dfnakvpled.kvdkavlqtwldaafakvvlekel.ekpdlllvyleetDtvgHkfGpdspevedalrrvDkaigdLlealderglsaetniilvSD 231
                   +f+  + ++  +vd+ v+ ++++++       +++ +++d+l+++  + D+vgHk+Gp +  ++d+  ++ +++ + +++lde+     t +++++D
    CCD26206.1 220 PFESLNVWDLdTVDNGVI-SYFEKELISKKNNQKEeKEWDVLIGHMLGMDHVGHKYGPSHFSMKDKQLQLNEFVTKVIDSLDED-----TLLVVMGD 310
                   444444444445665566.55555544433333336**********************9999**********************.....******** PP

                   ---EEEHTTSEEEGGGTSTGGHGEEEEECBHHS.SSEEEEEESTEE.E. CS
  Phosphodiest 232 HGmadvsddkvielndlleekgllhlkdegkggakaliainpkare.ln 279
                   HGm ++ +++ + +++l  +  l+   +++     ++ ++ p+++e l 
    CCD26206.1 311 HGMDHTGNHGGDSQDELEST--LFLFSKKQ-----QMWNLDPDNQEtLY 352
                   ******88888888888776..45555555.....66666666666544 PP

>> Metalloenzyme  Metalloenzyme superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.5   9.6e-06     0.043     118     190 ..     243     316 ..     233     330 .. 0.80
   2 ?   -4.0   0.0       1.6   7.4e+03     135     151 ..     802     818 ..     801     822 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 9.6e-06
                    HHHHHHHHHH.CC.-SEEEEEE-HHHHHHHTT-HHHHHHHHH..HHHHHHHHHHTTS-TTTEEEEEE-SSB--TT CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Metalloenzyme 118 evaekaldailsgkfdlvvvniknaDmvGHtgdleatiaaie..aaDeavkeildaieqvdgilvvtADHgnaed 190
                    e++ k  ++ ++++ d+++ ++  +D vGH+  ++      +  ++ e v +++d ++++  +lvv++DHg + +
     CCD26206.1 243 ELISKKNNQKEEKEWDVLIGHMLGMDHVGHKYGPSHFSMKDKqlQLNEFVTKVIDSLDEDT-LLVVMGDHGMDHT 316
                    5556666666778899**************987766544444115789********99988.*********9876 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 1.6
                    EEEEE-HHHHHHHTT-H CS
                    xxxxxxxxxxxxxxxxx RF
  Metalloenzyme 135 vvvniknaDmvGHtgdl 151
                    + +n++n+D  +H+  +
     CCD26206.1 802 IKLNVHNTDVKSHQATI 818
                    678**********9766 PP

>> Sulfatase  Sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   2.8e-05      0.13     220     308 ..     287     378 ..     237     379 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.8e-05
                 HHHHHHHHHHHHHHHTTTGGGEEEEEEESSSSCCCG.HHTTSSSCTTCSSSHHHHBEEEEEEETTTSHC................EEECSEEEGGGHHH CS
   Sulfatase 220 yvDdligrvlaaLeenglldntlvvftSDhgaslee.sngplrggkganayeggtrvPllvwwpgekap................rvseelvshiDlfp 301
                 + ++++ +v++ L     +++tl+v+++Dhg    +  +g+ +++ +++    + +  +                          ++    v++iDl+p
  CCD26206.1 287 QLNEFVTKVIDSL-----DEDTLLVVMGDHGMDHTGnHGGDSQDELESTLFLFSKKQQM---------WnldpdnqetlynvnklGKHYRQVNQIDLVP 371
                 5678899999999.....*************9885532222222222233333333333.........2333333333666666666666666777777 PP

                 HHHHHTT CS
   Sulfatase 302 tildlag 308
                 t+  l+g
  CCD26206.1 372 TLSLLTG 378
                 7766655 PP

>> ACT_3  ACT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.3e-05      0.24      22      67 ..     615     660 ..     612     663 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.3e-05
                 EEEEEE-S-GGGGGGG--SEEEEETTEEEEEEEHHHHHCTT----S CS
       ACT_3  22 YVFctlpdaladlekleplalfrEaEGlTliltkeeAeaagleyef 67 
                 Y F+ lp++ ++ ++    a++ E+EG+T  ++ ++A+++ l+ + 
  CCD26206.1 615 YEFVFLPNRQSSNNSGLLTATISENEGTTSGVNASTANSNSLPITR 660
                 5566677665555666666********************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      497  (0.0277205); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.77u 0.31s 00:00:01.08 Elapsed: 00:00:00.47
# Mc/sec: 6669.61
//
Query:       CCD26207.1  [L=762]
Description: hypothetical protein NDAI_0H00330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-42  144.8   0.9    1.8e-40  138.7   0.1    2.7  2  Creatinase_N_2   Creatinase/Prolidase N-terminal domain
    1.3e-39  136.1   0.0    1.8e-39  135.6   0.0    1.2  1  Peptidase_M24    Metallopeptidase family M24
    8.2e-21   73.8   3.3    1.3e-20   73.2   1.9    2.2  2  Peptidase_M24_C  C-terminal region of peptidase_M24
    3.7e-10   40.6   0.0    1.2e-09   38.9   0.0    1.8  2  Creatinase_N     Creatinase/Prolidase N-terminal domain


Domain annotation for each model (and alignments):
>> Creatinase_N_2  Creatinase/Prolidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.012        52      12      48 ..     123     159 ..      83     160 .. 0.85
   2 !  138.7   0.1   3.9e-44   1.8e-40       2     161 .]     302     466 ..     301     466 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.012
                     E--HHHHSS-HHHHHHHHHHHHHHTT-SEEEE-SHHH CS
  Creatinase_N_2  12 vlpeeyaGesvaeKlerlrkelkkkkadalvlsalde 48 
                     v   e+  ++++e+l++lr+e++k++  ++++ + de
      CCD26207.1 123 VSTNEVEKVDTTERLKALRNEMRKENLVCYIVPSQDE 159
                     4556777789999**********99999999988776 PP

  == domain 2  score: 138.7 bits;  conditional E-value: 3.9e-44
                     ---------EE--HHHHSS-HHHHHHHHHHHHHHT......T-SEEEE-SHHHHHHHTTEE--SBTTB----EEEEEES.S-EEEEE-GGG-..- CS
  Creatinase_N_2   2 rParpkepvfvlpeeyaGesvaeKlerlrkelkkk......kadalvlsaldeiAWllNlRGsDipynPvflsyaivtkdekatLFvdeekltee 90 
                     +P rpk+++++lp +++Ge+ ++K++r+ + ++kk        +al++ ald+i+W+lNlRGsDi+ynP f+sy+i+++ ++++LF+d+  +++e
      CCD26207.1 302 KPIRPKNKLILLPFQFHGEHLESKRKRVFEYIRKKypsngtTNKALIVVALDDICWFLNLRGSDIAYNPCFFSYLIIHE-NEIVLFTDNP-ISKE 394
                     6889****************************99878888888**********************************86.5*******77.899* PP

                     HHHHHHHTTEEEE-GGGHHHHHHHHHHHH----EEE-TTSBHHHHHHH-......GGGEEE-....S-HHHHHHHC--HHH CS
  Creatinase_N_2  91 vkehleengveikpyeevvsdlkalasaskkkvlldpsktsyalasalk......ekkvvee....espiallKavKNevE 161
                     + ++l+en+v++kpy++++ +l+++        ++ p+++s++l+++++      +    ++    +s+i+ lKavKN++E
      CCD26207.1 395 LLQYLKENNVTVKPYNSIWVHLTKID----YP-VFAPKTSSWKLIQSIPlansecT----HKsqiiPSIIEALKAVKNPIE 466
                     ***********************996....33.45679999******977754331....223455899**********98 PP

>> Peptidase_M24  Metallopeptidase family M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.6   0.0     4e-43   1.8e-39       7     208 ..     474     689 ..     468     690 .. 0.84

  Alignments for each domain:
  == domain 1  score: 135.6 bits;  conditional E-value: 4e-43
                    HHHHHHHHHHHHHHHHT............TCBHHHHHHHHHHHHHHHTT..TCEESSSSEEEEGGGGGSTTTBC...SSSB--TTEEEEEEEEEEE CS
  Peptidase_M24   7 ariasaaleavleaikp............gvterelaaeieattlkrhg..arglafppivasgenaavlhytp...ndrvlkegdlvlidagaey 85 
                    +r ++  + + ++++++             ++e+e a+ ++  ++ +++  + g +f++i +sg naa++hy+p   n+  + + +++l+d g++y
     CCD26207.1 474 QRKDALSIIKYFAWLEKnllspsitddvtTINEYEGAEYLRSLRM-ETQptFMGNSFETISSSGSNAAIIHYSPtakNSSIIDPTKIYLCDTGGQY 568
                    555555555555666652333333333324689999999997744.33356*********************9955444559************** PP

                    TTEEEEEEEEEECSSGSHHHHHHHHHHHHHHHHHHHC-ST.TSBHHHHHHHHHHHHHHTTBCCGBSSCSEEEES..SSSSEEEEE.ESSSTTCSSB CS
  Peptidase_M24  86 dgyasDitrTvlvGkftpeqrelyeavleaqeaaikavkp.GvtlseidaaarevlesaglakffphglGHgvG..levhdegps.vsresndgrk 177
                     + ++DitrT+++ ++++e+r++y++vl++   + + ++  G++++++da+ar++l+s+gl  +++hg+ Hg+G  l+vh++ p+ +   ++++ +
     CCD26207.1 569 LEGTTDITRTIHFTEPSDEERRNYTLVLKGNLSLERFIFIeGTSGEKLDAIARQHLWSNGL--NYRHGTSHGIGsfLNVHEG-PIgIG--TRSEIP 659
                    ************************************99988********************..88*********999***98.*9666..6789** PP

                    --TTBEEEEEEEEEEETTTEEEEEBEEEEEE CS
  Peptidase_M24 178 leeGmvftiEpgiyfapgeggvriedtvlvt 208
                    l+ G+++++Epg+y  ++ +g+rie++v v+
     CCD26207.1 660 LKVGNIVSNEPGYY-KDDCYGIRIENDVCVK 689
                    **************.67889********997 PP

>> Peptidase_M24_C  C-terminal region of peptidase_M24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   8.8e+03      10      19 ..     284     293 ..     281     294 .. 0.82
   2 !   73.2   1.9   2.8e-24   1.3e-20       1      63 []     700     762 .]     700     762 .] 0.95

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 2
                      -----STT-- CS
  Peptidase_M24_C  10 lvPidrklId 19 
                      l P dr+lId
       CCD26207.1 284 LKPVDRNLID 293
                      5699****98 PP

  == domain 2  score: 73.2 bits;  conditional E-value: 2.8e-24
                      -EEEEEES------STT--GGGS-HHHHHHHHHHHHHHHHHHHHHHHHT-H.HHHHHHHT--- CS
  Peptidase_M24_C   1 kfleFetlTlvPidrklIdvslLtpeEiawLnaYhakvreklsplLeeeneeleWLkraTrpl 63 
                      +fl+Fe+lTlvP++ klIdv+lLt+eE++ +n Yh+k++++l++ ++ ++ e++WL+r+T+pl
       CCD26207.1 700 PFLTFENLTLVPYCSKLIDVTLLTNEERNQINWYHQKIWNNLKESFDVNSDEYKWLQRETTPL 762
                      59*******************************************9666567*********97 PP

>> Creatinase_N  Creatinase/Prolidase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   2.6e-13   1.2e-09       1     116 [.     136     275 ..     136     293 .. 0.77
   2 ?   -3.1   0.0       2.6   1.2e+04      16      54 ..     346     388 ..     344     396 .. 0.68

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 2.6e-13
                   HHHHHHHHHHHTT-SEEEEECC............HHHHHHHSS...-SSSEEEEEE........ESSCEEEEEECTTHHHHHHHH.........TTS CS
  Creatinase_N   1 Rlerlralmeekgldallvtsp............enlrYltGfatetgsrglalvv........tadgalllvdalryteaaees........atve 69 
                   Rl++lr++m++++l  ++v+s+            e++r+++Gf   +gs+g+a  v         +d a l +d +ry+++a ++        +   
    CCD26207.1 136 RLKALRNEMRKENLVCYIVPSQdehqseyvsvadERRRFISGF---SGSAGIAC-VtrslnhsgDGDAAALSTD-GRYFNQAGKQldhnwqliK--- 224
                   9******************************************...********.6488888655555579999.**********654444443... PP

                   EEEEEST..........HSSHHHHHHHHHHHHT-EEEE-TTSSBHHHHHHHHHHCTT CS
  Creatinase_N  70 evveydd..........pvealadllkellesekrvgveldaltvafyealkealpd 116
                         +            +++ ++   + ++  ++g++++ ++++++  +k+ l++
    CCD26207.1 225 ------QgtdnftwqewCIKKVKEMADTNNKEPLSIGIDPKLISYESVTLFKQLLRE 275
                   ......3344555222545555555555544449*************9999999953 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.6
                   EEEEECCHHHHHHHSS.......-SSSEEEEEEESSCE.EEEEE CS
  Creatinase_N  16 allvtspenlrYltGfa....tetgsrglalvvtadga.lllvd 54 
                   al+v   ++++++ + +    ++    + +l+++ +++ +l++d
    CCD26207.1 346 ALIVVALDDICWFLNLRgsdiAYNPCFFSYLIIH-ENEiVLFTD 388
                   7888888999999888666665555555566444.344377776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       726  (0.0404931); expected 358.6 (0.02)
Passed bias filter:                      451  (0.0251548); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 5191.62
//
Query:       CCD26208.1  [L=985]
Description: hypothetical protein NDAI_0H00340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-172  575.1   4.3   1.1e-172  575.1   4.3    3.6  3  NPR3      Nitrogen Permease regulator of amino acid transport


Domain annotation for each model (and alignments):
>> NPR3  Nitrogen Permease regulator of amino acid transport activity 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -19.4  23.0         1   1.8e+04     112     112 ..     110     110 ..      31     207 .. 0.50
   2 !  575.1   4.3  5.9e-177  1.1e-172       1     467 []     230     810 ..     230     810 .. 0.94
   3 ?   -0.1   0.2     0.018   3.2e+02     247     299 ..     869     921 ..     818     970 .. 0.67

  Alignments for each domain:
  == domain 1  score: -19.4 bits;  conditional E-value: 1
        NPR3 112 d 112
                 d
  CCD26208.1 110 D 110
                 1 PP

  == domain 2  score: 575.1 bits;  conditional E-value: 5.9e-177
        NPR3   1 gfdseflaellsPerelcntrFeltvDdlaFlGlPvhvdedgkwrkskkkk.....kkskrkrssrskekkskesskksesssksesseekksskesee 94 
                 gfds+f+ae++sPere+cntrFe+t+D+l+FlGlPvh+d+dgkwrks+++k      ksk+++s+rs++++ k+s+k+s s ++s+s+++++s++e ++
  CCD26208.1 230 GFDSDFVAEFCSPEREMCNTRFEFTIDELCFLGLPVHIDSDGKWRKSRHSKrrqgsVKSKKSSSGRSSSSNFKRSRKRSISLHRSKSRRSEDSDPEVAD 328
                 8************************************************999***999***************************************** PP

        NPR3  95 seekesneeeeeeededdeesek.........eeeekedkkknltmFhlvfvlnPplseynsrvdemYenvvkklsaalkyeQaksdYVskEcekilkl 184
                 +e  e+n ++++++d  d+ ++k          e++k++ +kn++mFh++f++nPpl+eyn+++d+mY++vv+kls++l+y+Qak++YVsk+c+ ilk+
  CCD26208.1 329 DEGIENNINQNNNNDIVDNGDDKtvedsveqvGECDKNNFDKNMNMFHVCFIMNPPLTEYNKKTDDMYQYVVAKLSLLLRYVQAKDSYVSKQCNLILKE 427
                 ******************999999********9****************************************************************** PP

        NPR3 185 kekalkesk..........klkelyreilekSsLAraltelyesisknkiAslelnddvtislqiPiktefsklpnekeeavlpgsyltsilnesesee 273
                 +e++lk s+          k+k+lyr+ilekSsLA++lte++++++kn+iA+l+l++++++slq+P+++ef++lpn+k +++++++yltsiln+s+ e+
  CCD26208.1 428 RERVLKFSQkyksikgkhnKAKYLYRRILEKSSLAKSLTECVHKLQKNQIACLDLGNRKIVSLQVPVENEFQILPNFKITPAIENCYLTSILNNSFLER 526
                 *********************************************************************************************666666 PP

        NPR3 274 deeeeeekfLek.....................................................................................ny 287
                  + +                                                                                             ny
  CCD26208.1 527 LSLR-------AdgltstttgtnagtstdwriendvddetnrgrtsnnnnnrssnikyqsisdgkptnpmalnrntvvtyystgdseilemnnndllNY 618
                 5442.......0233334566666666677777777778888888888888888888888888999999999999999999999999999********* PP

        NPR3 288 aLLlLddekkiikelekssaeddeltvllaelvralkptlslaeyaslldedleeeq..vsesnslelsqirslarhLiywRrArvIdplssrdvYivs 384
                 ++LlLdd+++ii++le+ss++d  ++++l++lv++++p++++++y++++de+l +      ++n+++++++rs+++hLiywR+ArvI p+ss+++Yivs
  CCD26208.1 619 SILLLDDPTNIIQSLEESSNQDVLGNTILRHLVKRMQPNIPIRNYQYIIDEVLGSGFksGITDNTIQCNILRSCTLHLIYWRYARVILPISSKSFYIVS 717
                 *****************************************************8853335667************************************ PP

        NPR3 385 Pladls.......kleqasaeFkekFpslPsLpkfLsaLSssk...prpfssiipskehrelYleaLaWLlrkglvtqlltfarirvdkeikm 467
                 P +++s       k+ ++s++FkekFp lP+L+++Ls +S++     ++f++iip++eh+++Yl aLaWL+r+g+vt ll+f++irvdk+ikm
  CCD26208.1 718 PVSSVSyskenesKFVTDSISFKEKFPLLPTLENMLSIISNNGtgkVECFNNIIPTREHKPTYLGALAWLIRYGYVTPLLSFIYIRVDKKIKM 810
                 ****************************************876777**********************************************8 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.018
        NPR3 247 klpnekeeavlpgsyltsiln.eseseedeeeeeekfLeknyaLLlLddekkii 299
                 +l+n++ +   +gs+l++ +n ++++++ ++e +++ L+k+y+++l  + ++ i
  CCD26208.1 869 TLKNTSIP-NERGSNLNDGQNdDNMNDDLHFEYDDPELQKDYTIILDPERATAI 921
                 33444443.367777777777444444444577778888888887764444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (985 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1575  (0.0878465); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 6473.49
//
Query:       CCD26209.1  [L=642]
Description: hypothetical protein NDAI_0H00350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-261  869.2   8.9   1.4e-261  869.0   8.9    1.0  1  HSP70           Hsp70 protein
    1.7e-17   63.3   0.1    5.1e-16   58.4   0.0    2.5  3  MreB_Mbl        MreB/Mbl protein
     0.0031   17.2   0.0      0.016   14.9   0.0    2.1  2  FGGY_C          FGGY family of carbohydrate kinases, C-termin
     0.0092   15.0   0.6       0.13   11.3   0.1    2.6  3  DDR             Diol dehydratase reactivase ATPase-like domai
  ------ inclusion threshold ------
       0.12   11.6   0.1       0.12   11.6   0.1    2.4  2  Hydantoinase_A  Hydantoinase/oxoprolinase
        1.5    9.1   0.0        1.5    9.1   0.0    2.8  4  PMBR            Pseudomurein-binding repeat
        1.9    8.0   8.3        3.7    7.1   8.3    1.4  1  TMCO5           TMCO5 family


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  869.0   8.9  5.4e-265  1.4e-261       1     599 []       4     607 ..       4     607 .. 0.98

  Alignments for each domain:
  == domain 1  score: 869.0 bits;  conditional E-value: 5.4e-265
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 ++GiDLGtt+s+va + ++++++ian++gnrttPs+vaFt++erl+G+aAk+qa++np+ntvf++KrliGr+f+d ev+++ k++p+k+    +gk+++
  CCD26209.1   4 AVGIDLGTTYSCVAHFANDRVDIIANDQGNRTTPSFVAFTDTERLIGDAAKNQAAMNPSNTVFDAKRLIGRNFNDHEVTEDAKHFPFKLIDV-DGKPQI 101
                 59***************************************************************************************998.9***** PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTCCSSSCEEEEEEEEXSS CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGldkkdkernvlvyDlGgg 196
                 +ve++ge  kftpeqis+mvL k+ketae+ylg  v+dav+tvPaYfnd+qRqatkdAg+iAGLnvlRi+NepTAaa+aYGldkk  e+nvl++DlGgg
  CCD26209.1 102 QVEFKGEtiKFTPEQISSMVLGKMKETAEQYLGCAVNDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGGEENVLIFDLGGG 200
                 *************************************************************************************************** PP

                 XEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEEEH CS
       HSP70 197 tfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlseklsR 295
                 tfdvS+l++e+G+fevkaTagDthlGGedfD++lv+h+v+efk+k++ dl+++++al+rl++a+e+aK++LSs  ++++++ei++++e g d+ ++++R
  CCD26209.1 201 TFDVSLLSIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKNKKDLTTNQRALRRLRTACERAKRTLSS--SAQTSVEIDSLFE-GIDFYTSITR 296
                 *************************************************************************..677788899****.********** PP

                 HHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTC..GCSHCCEEEEBES CS
       HSP70 296 akfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpDeavaiGAAvqagvlsge..eevkdllllDvtp 391
                 a+feel++dl++ tl+pvek+l+dakl+k++++e+vlvGGstRiPkvq+lv ++f+ kep++++npDeava+GAAvqa++l+g+  ++++dllllDv p
  CCD26209.1 297 ARFEELCADLFRSTLDPVEKVLRDAKLDKSQVHEIVLVGGSTRIPKVQKLVTDYFNgKEPNRSINPDEAVAYGAAVQAAILTGDqsSKTQDLLLLDVAP 395
                 *******************************************************99**************************9777999********* PP

                 S-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETTTCC CS
       HSP70 392 LslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdketgk 490
                 Lslgiet+ggvmtkli+rn tiptkks++fst+adnq+ v i+v++ger+ +kdn+llg+fel+gippaprGvpqieVtfd+d nGil+vsa +k+tgk
  CCD26209.1 396 LSLGIETAGGVMTKLIPRNSTIPTKKSEIFSTYADNQPGVLIQVFEGERAKTKDNNLLGKFELSGIPPAPRGVPQIEVTFDVDSNGILNVSAVEKGTGK 494
                 *************************************************************************************************** PP

                 EEEEEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHH....HHHHHHHHHHHCHTTSSCHHHHHHHHH CS
       HSP70 491 eeeitieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleeeaekvseaek....ekvesaieeLkeeleeeekeeieakte 584
                 +++iti++++g ls+e+ie+mv++ae+++eed+k+ e+i akn++e+++ysl+++++e+++k++ea+k    +k e+ai++L++++ ++ kee+ a+++
  CCD26209.1 495 SNKITITNDKGrLSKEDIERMVSEAEKFKEEDEKETERIAAKNQLESIAYSLKSSVSEAGDKLDEADKetvtKKAEEAIAWLDSNM-TATKEEFDAQLK 592
                 ***********9********************************************************888888999999***997.7889******** PP

                 HHHHHHHHHHHHHHH CS
       HSP70 585 elkkvvekiaeklye 599
                 el++v+++i++kly+
  CCD26209.1 593 ELQEVANPIMTKLYQ 607
                 ***********9986 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.032        82       2      34 ..       3      44 ..       2      66 .. 0.63
   2 !   58.4   0.0     2e-19   5.1e-16      89     316 ..     133     371 ..     112     379 .. 0.81
   3 ?   -2.8   0.0      0.81   2.1e+03     170     190 ..     547     567 ..     540     576 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.032
                SEEEEEE-SSEEEE..EETTTEEEEEE.......ES-EEEET CS
    MreB_Mbl  2 kdlgiDLGtantlv..yvkgkgivlne.......psvvAikk 34
                k +giDLGt+   v  +++++  ++ +       ps vA++ 
  CCD26209.1  3 KAVGIDLGTTYSCVahFANDRVDIIANdqgnrttPSFVAFTD 44
                689*******99986667777655432122222266666554 PP

  == domain 2  score: 58.4 bits;  conditional E-value: 2e-19
                 S-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-E.EEEEE-SS-EEEEEEETTE.EEEEEE....ES-SHHHHH CS
    MreB_Mbl  89 kslskprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveepsgn.mvvdiGggttevavislgg.ivtsks....vrvaGdeld 181
                   ++ +  v++vP   ++ +r+A k+a + aG +   +i+ep aAAi  gl+ +  + n ++ d+Gggt +v+++s+ + i + k+     +++G+++d
  CCD26209.1 133 LGCAVNDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKGGEENvLIFDLGGGTFDVSLLSIEDgIFEVKAtagdTHLGGEDFD 231
                 445667899*******************************************99877662788*************97526544432222689****** PP

                 HHHHHHHHHHHS......EE--HHHHHHHHHHH-BSS--HHHH.EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHH CS
    MreB_Mbl 182 eaiikyirkkyn......lliGertaekikieigsavkeeeee.kmeikGrdlvtglpkevevsseevrealkepvsaiveavkevLektppeLaadiv 273
                 + ++++  ++++      l+  +r  ++++++   a+ + +++ +++++   l +g+   ++++ ++ +e  ++ +++ ++ v++vL++++ + +  + 
  CCD26209.1 232 NRLVNHFVQEFKrknkkdLTTNQRALRRLRTACERAKRTLSSSaQTSVEIDSLFEGIDFYTSITRARFEELCADLFRSTLDPVEKVLRDAKLDKS-QV- 328
                 **999875554322222288888889999999999988877767999*****************************************9887644.33. PP

                 HH-EEEESGGGGSBTHHHHHHHHHSS-.EEE-SSTTTHHHHHHH CS
    MreB_Mbl 274 drgivltGGgallkgldkllseetglp.vkvaedpltcvakGtg 316
                  + ivl+GG++ +  ++kl+++ ++ +  + + +p ++va G++
  CCD26209.1 329 -HEIVLVGGSTRIPKVQKLVTDYFNGKePNRSINPDEAVAYGAA 371
                 .569******************9976515678889999998876 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.81
                 EEEES-SHHHHHHHHHHHHHH CS
    MreB_Mbl 170 sksvrvaGdeldeaiikyirk 190
                 ++sv  aGd+ldea  + + k
  CCD26209.1 547 KSSVSEAGDKLDEADKETVTK 567
                 578999******987666655 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.2e-06     0.016     145     196 ..     305     376 ..     260     378 .. 0.76
   2 ?   -1.2   0.0      0.56   1.4e+03      44     143 ..     566     591 ..     559     612 .. 0.55

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 6.2e-06
      FGGY_C 145 d..................sgkpldrlavdGGgskndllmqllAdilg..vpVerpktaeatalGaAilAav 196
                 d                  +++++ +++++GG ++ + +++l  d ++   p +   ++ea+a GaA+ Aa+
  CCD26209.1 305 DlfrstldpvekvlrdaklDKSQVHEIVLVGGSTRIPKVQKLVTDYFNgkEPNRSINPDEAVAYGAAVQAAI 376
                 23333333333335555557999**************************999777788************96 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.56
      FGGY_C  44 iavagslvawlldnl.glreeirdageveeslaelaaaeavadaggvvfvpafsglrapywdpdargtitglsssttlahiarAaleavalqlrailea 141
                 + +a +++awl +n  +++ee++                                                                           a
  CCD26209.1 566 TKKAEEAIAWLDSNMtATKEEFD---------------------------------------------------------------------------A 589
                 45666677777777533333333...........................................................................2 PP

      FGGY_C 142 le 143
                   
  CCD26209.1 590 QL 591
                 22 PP

>> DDR  Diol dehydratase reactivase ATPase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.43   1.1e+03     178     224 ..      76     126 ..      72     143 .. 0.79
   2 !   11.3   0.1     5e-05      0.13     118     166 ..     175     222 ..     136     225 .. 0.83
   3 ?    0.7   0.0     0.083   2.1e+02     274     297 ..     327     350 ..     311     355 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.43
         DDR 178 ledrelaEdiKkyp..lakveslfhireE..dgtvqFfdkpldpevfarvv 224
                 ++d+e++Ed K++p  l+ v++  +i+ E    t++F  +++++ v++++ 
  CCD26209.1  76 FNDHEVTEDAKHFPfkLIDVDGKPQIQVEfkGETIKFTPEQISSMVLGKMK 126
                 579999999999985567888888888774245789999999999999875 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 5e-05
         DDR 118 aemAilGalttPGtekplailDlGaGstDaalieeegevkavhlAGAGe 166
                 + +Ai   l   G e+++ i DlG+G+ D +l++ e+ +  v  A AG+
  CCD26209.1 175 TAAAIAYGLDKKGGEENVLIFDLGGGTFDVSLLSIEDGIFEV-KATAGD 222
                 45677778889999*******************999988886.467776 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.083
         DDR 274 didfvvlvGgsalDfEipelvtda 297
                 +++ +vlvGgs+    +++lvtd 
  CCD26209.1 327 QVHEIVLVGGSTRIPKVQKLVTDY 350
                 67889********99999999986 PP

>> Hydantoinase_A  Hydantoinase/oxoprolinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.7e-05      0.12      57      97 ..     169     208 ..     116     225 .. 0.81
   2 ?   -1.1   0.9      0.36   9.2e+02     180     229 ..     522     569 ..     515     607 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 4.7e-05
  Hydantoinase_A  57 tilSGPaaGvvgaaatsklagekkvItfDmGGTstDvslik 97 
                      i+  P a ++++    k+ ge++v+ fD+GG ++Dvsl++
      CCD26209.1 169 RIINEPTAAAIAYGL-DKKGGEENVLIFDLGGGTFDVSLLS 208
                     556667777777766.78999****************9865 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.36
  Hydantoinase_A 180 flsgpdgdqkldve.larrafeelakelnlkveevAegilsvavenmanav 229
                     f    ++d+k  ++ +a++++e +a  l+ +v e+ +++ ++ +e++ ++ 
      CCD26209.1 522 FK---EEDEKETERiAAKNQLESIAYSLKSSVSEAGDKLDEADKETVTKKA 569
                     55...4444444441556667999999999955555555555444444433 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       3.6   9.1e+03      17      26 ..     239     248 ..     239     248 .. 0.84
   2 ?   -3.3   0.2       4.8   1.2e+04      24      29 ..     352     357 ..     352     358 .. 0.92
   3 ?    9.1   0.0   0.00059       1.5       2      23 ..     504     525 ..     503     529 .. 0.91
   4 ?   -0.7   0.0      0.73   1.9e+03       7      24 ..     562     579 ..     561     579 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3.6
        PMBR  17 vlafiesngr 26 
                 v  f+++n++
  CCD26209.1 239 VQEFKRKNKK 248
                 5679****97 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 4.8
        PMBR  24 ngrlPn 29 
                 ng++Pn
  CCD26209.1 352 NGKEPN 357
                 9****9 PP

  == domain 3  score: 9.1 bits;  conditional E-value: 0.00059
        PMBR   2 sgkisyeeyldmasrvlafies 23 
                 +g++s+e++ +m s++ +f+e+
  CCD26209.1 504 KGRLSKEDIERMVSEAEKFKEE 525
                 699*****************97 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.73
        PMBR   7 yeeyldmasrvlafiesn 24 
                 +e++++ a +++a+ +sn
  CCD26209.1 562 KETVTKKAEEAIAWLDSN 579
                 68999*********9998 PP

>> TMCO5  TMCO5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   8.3    0.0014       3.7      46     139 ..     503     599 ..     478     607 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0014
       TMCO5  46 llereedeeenfsenekedalkeLeletaklekkneiLlkevveLqkkisrkeskqddleketlkqkleelkv....klqkseescaeqekelakvee 139
                  + r  +e+ + + +e e++  e e+et ++  kn+ L +   +L++ +s++ +k d+ +ket+ +k ee  +     + +++e    q kel+ v +
  CCD26209.1 503 DKGRLSKEDIERMVSEAEKFKEEDEKETERIAAKNQ-LESIAYSLKSSVSEAGDKLDEADKETVTKKAEEAIAwldsNMTATKEEFDAQLKELQEVAN 599
                 34456678889999*********************7.5666689999999999999999999999888887662222566677777778888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1564  (0.087233); expected 358.6 (0.02)
Passed bias filter:                      848  (0.0472977); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.72u 0.32s 00:00:01.04 Elapsed: 00:00:00.44
# Mc/sec: 4429.66
//
Query:       CCD26210.1  [L=568]
Description: hypothetical protein NDAI_0H00360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   7.3e-103  343.7   9.4   7.3e-103  343.7   9.4    3.0  2  Septin        Septin
    2.9e-05   24.1   0.1    2.9e-05   24.1   0.1    2.2  3  MMR_HSR1      50S ribosome-binding GTPase
    4.8e-05   23.0   0.5    4.8e-05   23.0   0.5    2.9  2  GTP_EFTU      Elongation factor Tu GTP binding domain
    0.00015   22.2   0.1     0.0015   19.0   0.0    2.1  2  AAA_16        AAA ATPase domain
    0.00055   20.1   0.1     0.0018   18.5   0.0    2.0  1  Roc           Ras of Complex, Roc, domain of DAPkinase
     0.0015   18.8   0.4      0.019   15.3   0.0    2.8  3  AAA_22        AAA domain
     0.0026   18.3   4.7     0.0026   18.3   4.7    2.4  2  AAA_23        AAA domain
     0.0074   16.2   2.5     0.0074   16.2   2.5    3.5  3  RsgA_GTPase   RsgA GTPase
  ------ inclusion threshold ------
      0.019   15.5   0.3      0.019   15.5   0.3    2.8  2  ABC_tran      ABC transporter
      0.025   14.1   1.9      0.034   13.7   0.0    2.0  2  AAA_7         P-loop containing dynein motor region
      0.097   11.9   6.8       0.16   11.2   6.8    1.2  1  DUF3150       Protein of unknown function (DUF3150)
       0.18   11.5   2.8       0.21   11.3   0.0    2.3  2  AAA_24        AAA domain
       0.75   10.2   0.0       0.75   10.2   0.0    2.7  2  RNA_helicase  RNA helicase
        1.1    8.2   7.5        8.6    5.3   0.0    2.4  2  DUF3987       Protein of unknown function (DUF3987)
        1.8    7.2   6.2        2.2    6.9   4.6    2.0  2  SepSecS       O-phosphoseryl-tRNA(Sec) selenium transferase, 


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.7   9.4  6.1e-106  7.3e-103       1     280 [.     142     462 ..     142     463 .. 0.93
   2 ?   -1.2   2.0      0.84     1e+03      21      66 ..     493     544 ..     489     549 .. 0.64

  Alignments for each domain:
  == domain 1  score: 343.7 bits;  conditional E-value: 6.1e-106
                 XEEEEEEEEEEBTTSSCCCCCCTTSSSS----..............................--------------S-EEEEEEEEETTCEEEEEEEE- CS
      Septin   1 kgieftlmvvGesglGkttlintlfetdliee..............................ekleeasekkkktveikkkkvvieedgvklnltviDt 69 
                 kg+++++++vG+sglGkttlin+lf+++  ++                              e+ ++ ++++ + ++ik+++++iee+gv l+l++iDt
  CCD26210.1 142 KGFNLNILCVGQSGLGKTTLINSLFNSTFNDNnnnndeseentdslnetndnesqiededenEQDDNDEKTNDNALKIKTSSTIIEENGVILKLNIIDT 240
                 79************************999988899**********************9997444444444667889*********************** PP

                 --BSSSSSHHCCCHHHHHHHHHHHHHHHHHCTSS--..S.S--.........---EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEESSGGGS-H CS
      Septin  70 pgfGdavdnskswepiveyideqfeeylreesklkR..k.kiv.........DkRvHaclyfisPtghglkpldvelmkklsekvnliPviaKaDtltk 156
                 pgfGd++dns+ w+pi+++i+++f++yl++e+k++R  + + +         D R+Haclyfi+Ptgh lkpld+e+  k+++k+nliP+i+K+D+lt+
  CCD26210.1 241 PGFGDSIDNSNGWNPIIDEINSRFDQYLDQENKINRsmSnS-InnisginndDMRIHACLYFIEPTGHFLKPLDLEFCSKIHKKCNLIPLISKSDILTD 338
                 ************************************53232.123334444499********************************************* PP

                 HHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHHHHHHHHC-SEEB-SSSSEEEE.SSSEEEEEEETTEEEETT-TTT-SCCHHHHHHHHHCHHH CS
      Septin 157 eElkefKkkireeleeeeikiyklpdeeededeeakelseklkeslPfaivgsneliek.kgkkvrgRkypWGvvevenekhsdFlkLrklllkthled 254
                 +E+ +fKk+i+++l  ++i+++k p++++ +d+e+++++ kl eslP+aivgs++l+++ kg++vrgR+ypWG++e++n++hsdF++Lr+ll++++le+
  CCD26210.1 339 DEILQFKKRITHQLIDSNIELFK-PPIYKLDDDETSTMASKLYESLPYAIVGSTNLVTNaKGETVRGRQYPWGIIEIDNSNHSDFNMLRDLLIRNYLEE 436
                 ***********************.99999999999************************9*************************************** PP

                 HHHHHHHTHHHHHHHHHH-XXXXXXX CS
      Septin 255 LkevteellYetyRseklsklkekae 280
                 L+e+t++ lYe+yRsekl kl +k++
  CCD26210.1 437 LRERTNNELYENYRSEKLIKLGIKQD 462
                 ********************999887 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.84
                 CCTTSSSS----......--------------S-EEEEEEEEETTCEEEEEE CS
      Septin  21 intlfetdliee......ekleeasekkkktveikkkkvvieedgvklnltv 66 
                 ++++f++++ e+      +++e  + +k+ + +++k+ + +ee++ +l++ +
  CCD26210.1 493 MKSVFQQKVSEKekklqkSETELFARHKEMKEKLQKQLKALEEKKHQLEMSI 544
                 6788888888874333221122222345556677788888999988888776 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   2.4e-08   2.9e-05       2      57 ..     148     253 ..     147     331 .. 0.70
   2 ?   -3.4   0.0       8.2   9.8e+03      17      35 ..     385     403 ..     382     416 .. 0.71
   3 ?   -2.7   0.3       5.2   6.3e+03      81      81 ..     516     516 ..     472     547 .. 0.52

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 2.4e-08
                 EEEEESTTSSHHHHHHHHHT...........STEEESSSTTSSSSEEEEEEEETTEE....................................EEEEEC CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltg...........ekaivsdkpgtTrdinegrvklkgke....................................ielvDt 53 
                 +++vG++  GK+tLin+l++           e  + +d    T d +   +     e                                    ++++Dt
  CCD26210.1 148 ILCVGQSGLGKTTLINSLFNstfndnnnnndESEENTDSLNETNDNESQ-I-----EdedeneqddndektndnalkiktsstiieengvilkLNIIDT 240
                 889****************844444333221123444444555554444.3.....033344577888999999999**************99****** PP

                 GGC.........S CS
    MMR_HSR1  54 pGl.........i 57 
                 pG+          
  CCD26210.1 241 PGFgdsidnsngW 253
                 **54433333330 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 8.2
                 HHHHTSTEEESSSTTSSSS CS
    MMR_HSR1  17 naltgekaivsdkpgtTrd 35 
                  a++g++  v++ +g T  
  CCD26210.1 385 YAIVGSTNLVTNAKGETVR 403
                 5677777788888887765 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 5.2
                 E CS
    MMR_HSR1  81 l 81 
                 +
  CCD26210.1 516 F 516
                 1 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.5     4e-08   4.8e-05       4      82 ..     146     245 ..     144     251 .. 0.88
   2 ?   -2.8   3.3       3.2   3.8e+03     184     184 ..     425     425 ..     316     546 .. 0.52

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 4e-08
                 EEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHST.....................HCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSG CS
    GTP_EFTU   4 rnigiighvDhGKtTLtdrLlyktgaiskkgekaeeerv.....................lDtlkeErergiTiksaaisleketkkylinliDtPGHv 81 
                 +ni  +g    GKtTL+ +L  +t ++++++++++ee++                      D+ ++   + + ik++ + +e+++   ++n+iDtPG  
  CCD26210.1 146 LNILCVGQSGLGKTTLINSLFNSTFNDNNNNNDESEENTdslnetndnesqiededeneqDDNDEKTNDNALKIKTSSTIIEENGVILKLNIIDTPGFG 244
                 69999****************999999988887755556788999*********99999888888889999999999999999999***********76 PP

                 G CS
    GTP_EFTU  82 d 82 
                 d
  CCD26210.1 245 D 245
                 5 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 3.2
                 H CS
    GTP_EFTU 184 l 184
                 l
  CCD26210.1 425 L 425
                 0 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.2e-06    0.0015      22      86 ..     143     201 ..     133     273 .. 0.73
   2 ?    0.3   0.4      0.65   7.8e+02      67     136 ..     467     539 ..     429     545 .. 0.64

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.2e-06
      AAA_16  22 grpelvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysalaqalareellrqll 86 
                 g   ++l++G+sG GK++l+++l+++   d     + ++d++e+++    l ++ ++e+ +++++
  CCD26210.1 143 GFNLNILCVGQSGLGKTTLINSLFNSTFND----NNNNNDESEENTD--SLNETNDNESQIEDED 201
                 44489*******************988777....6777777755532..2444444444444444 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.65
      AAA_16  67 ipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea......srllellkrllallsrderp 136
                  ++++ a++l++ +l ++ l+++es   + +++k  e  +   +l  +e       + + e+l++ l+ l++++++
  CCD26210.1 467 KEFDPQARQLEETQLHEAKLAKLESEMKSVFQQKVSEKEK---KLQKSETelfarhKEMKEKLQKQLKALEEKKHQ 539
                 5556667777777777777777777666666666555544...333333345577778888888888666666665 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.5e-06    0.0018       2      41 ..     148     187 ..     147     205 .. 0.76

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 1.5e-06
                 EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEEC CS
         Roc   2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkev 41 
                 +++vG+sg GKt+l++++ +++f++++++    +  t ++
  CCD26210.1 148 ILCVGQSGLGKTTLINSLFNSTFNDNNNNNDESEENTDSL 187
                 789********************99988765555544444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.6e-05     0.019       8      32 ..     148     172 ..     145     198 .. 0.80
   2 ?   -1.5   0.1       2.3   2.7e+03      96     118 ..     413     443 ..     391     459 .. 0.57
   3 ?   -1.3   0.9       2.1   2.5e+03      71      71 ..     515     515 ..     428     556 .. 0.51

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 1.6e-05
      AAA_22   8 lvvtGesGtGKTtllrrlleqldee 32 
                 ++++G+sG GKTtl++ l+++  ++
  CCD26210.1 148 ILCVGQSGLGKTTLINSLFNSTFND 172
                 89****************9986544 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 2.3
      AAA_22  96 iiDEaqhlr....s....eealeeLrsllnl 118
                  iD+  h +    +     + leeLr++ n+
  CCD26210.1 413 EIDNSNHSDfnmlRdlliRNYLEELRERTNN 443
                 4555555422222133334555555555554 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 2.1
      AAA_22  71 e 71 
                  
  CCD26210.1 515 L 515
                 1 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   4.7   2.1e-06    0.0026      21     144 ..     146     274 ..     127     375 .. 0.62
   2 ?    5.2  16.2     0.023        28     102     198 ..     447     543 ..     377     564 .. 0.58

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.1e-06
      AAA_23  21 ltlI.tGpNGaGKTTildAiklaLygetprlsrksgrgfeksdveiesegkvkayveltfenkdgrytrsiererelskkkgkttkka.....klelle 113
                 l+++ +G+ G GKTT+++ +   ++++ +++++   ++ e+ d   e+ +++++++e + en++++++++  ++  ++ k ++t+ ++     kl++++
  CCD26210.1 146 LNILcVGQSGLGKTTLINSLFNSTFNDNNNNND---ESEENTDSLNET-NDNESQIEDEDENEQDDNDEKTNDNALKI-KTSSTIIEEngvilKLNIID 239
                 554426********************7554444...333444433333.36666777776666665533332222222.22333333313333333334 PP

      AAA_23 114 ideleqfisellgskki....ilnlilflgqerfe 144
                 +    + i+++ g + i    ++++ ++l+qe++ 
  CCD26210.1 240 TPGFGDSIDNSNGWNPIideiNSRFDQYLDQENKI 274
                 43444444443332222222133444444444432 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.023
      AAA_23 102 kttkkaklelleideleqfisellgskkiilnlilflgqerfeefelkdkkerleelekeleeledekkllekl.eqekekekeleeleeeleeilke 198
                 ++++ +kl +l+i++ ++++ ++++ + ++l+  +++ ++ ++ +++++   + +  eke++ ++ e +l+ ++ e +++ +k+l++lee+  ++++ 
  CCD26210.1 447 ENYRSEKLIKLGIKQ-DNTVFKEFDPQARQLEETQLHEAKLAKLESEMKSVFQQKVSEKEKKLQKSETELFARHkEMKEKLQKQLKALEEKKHQLEMS 543
                 222222222222332.3333334444444555555555555544444444445555555555555555555555334444566777777777777655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.5   6.2e-06    0.0074      90     123 ..     137     195 ..     106     246 .. 0.60
   2 ?    0.1   0.0      0.56   6.7e+02      45      73 ..     322     349 ..     314     388 .. 0.79
   3 ?   -1.5   1.8       1.8   2.1e+03      64     109 ..     500     546 ..     478     565 .. 0.65

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 6.2e-06
                  HHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT..........................- CS
  RsgA_GTPase  90 leelkellkdktsvlvGqSGvGKStLinallpe..........................l 123
                   +++++ ++ ++ + vGqSG GK+tLin+l ++                           
   CCD26210.1 137 RKSIQKGFNLNI-LCVGQSGLGKTTLINSLFNStfndnnnnndeseentdslnetndneS 195
                  555555555443.458**************997666666666666666666655555541 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.56
                  TT-EEEEEEE-GGG--HHHHHHHHHHHHH CS
  RsgA_GTPase  45 kgiepvivlnKiDlleeeeeleelkeele 73 
                  k+ +++ +++K D+l+++e + ++k++++
   CCD26210.1 322 KKCNLIPLISKSDILTDDE-ILQFKKRIT 349
                  667777899*********9.666665554 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 1.8
                  HHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTT.SEEEEECSTT CS
  RsgA_GTPase  64 eleelkeelealgyevllvsaktkegleelkellkd.ktsvlvGqSG 109
                  +++e +++l++ ++e+++ +++ ke+l++  ++l++ k  + +  S 
   CCD26210.1 500 KVSEKEKKLQKSETELFARHKEMKEKLQKQLKALEEkKHQLEMSISN 546
                  57778888888888888888887777776666665534444455555 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   0.3   1.6e-05     0.019      16     102 ..     150     274 ..     138     300 .. 0.60
   2 ?    2.0   4.7      0.23   2.7e+02      43      96 ..     475     537 ..     447     562 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.6e-05
                 EEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGG..B-HHHCCHCEEEE-SS--S-TTSBHHHH................................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx................................. RF
    ABC_tran  16 ivGenGaGKStLlkllagllkpteGeilldgkdlke..qeleslrkeigvlpqepqlfpeltvren................................. 79 
                  vG++G GK+tL++ l + + +++ + + ++++ ++  +e++  +++i+   +++q +++ +  +n                                 
  CCD26210.1 150 CVGQSGLGKTTLINSLFNSTFNDNNNNNDESEENTDslNETNDNESQIEDEDENEQDDNDEKTNDNalkiktsstiieengvilklniidtpgfgdsid 248
                 58**************99998877776444333333344555555555555555666666655566777777777777778888888877787777766 PP

                 .......HHHTCHHHHHHHSTTGGTTCBGE CS
                 .......xxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 .......esdeeiekalsklglkelkdtvv 102
                             i+++ s++++  ++++++
  CCD26210.1 249 nsngwnpI----IDEINSRFDQYLDQENKI 274
                 44433331....444444443333333333 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.23
                 EETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH.........HHHTCHHHHHHHSTTGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxx RF
    ABC_tran  43 lldgkdlkeqeleslrkeigvlpqepqlfpeltvren.........esdeeiekalsklglke 96 
                 +l++++l+e +l +l++e++ ++q++   +e++++++         e++e+++k l+ l+ k+
  CCD26210.1 475 QLEETQLHEAKLAKLESEMKSVFQQKVSEKEKKLQKSetelfarhkEMKEKLQKQLKALEEKK 537
                 45899999999**************88888887777778999988877888888888877665 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   0.0   2.8e-05     0.034      34      61 ..     146     173 ..     137     198 .. 0.81
   2 ?   -2.1   0.9         2   2.4e+03      51      88 ..     527     563 ..     524     565 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.8e-05
       AAA_7  34 kpvllvGptGtGKtviikdllkkldkek 61 
                  ++l+vG++G GKt++i++l+++  +++
  CCD26210.1 146 LNILCVGQSGLGKTTLINSLFNSTFNDN 173
                 589****************666654344 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2
       AAA_7  51 kdllkkldkekylsltinfsaqtsanqlqdiiesklek 88 
                 ++ lk+l+ ek   l +++s+q s++ +q+  +++ +k
  CCD26210.1 527 QKQLKALE-EKKHQLEMSISNQGSSSPIQQQQHQQQKK 563
                 55677888.8888999*********9999987776655 PP

>> DUF3150  Protein of unknown function (DUF3150)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   6.8   0.00013      0.16      96     212 ..     421     540 ..     418     546 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
     DUF3150  96 eFekekqeFLarydravedWinenp....ewaeiIraavpsaetvaerlsfdyqlvkvqppeekees.kgLeeevkgLggqlfaEiakearelleksla 189
                 +F+  ++ ++ +y +++++  n++     + +++I+  +++++tv +  +fd q+ +++ ++ +e++  +Le+e+k+  +q ++E  k+ +++ ++ +a
  CCD26210.1 421 DFNMLRDLLIRNYLEELRERTNNELyenyRSEKLIKLGIKQDNTVFK--EFDPQARQLEETQLHEAKlAKLESEMKSVFQQKVSEKEKKLQKSETELFA 517
                 6777777777777777777766644544477**************99..5899999**99999999999****************************** PP

     DUF3150 190 greevtrkaLrplrrireKlagL 212
                 + +e+++k  ++l++++eK + L
  CCD26210.1 518 RHKEMKEKLQKQLKALEEKKHQL 540
                 ******************98776 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00017      0.21       3      22 ..     146     165 ..     145     181 .. 0.85
   2 ?   -1.9   0.3         2   2.4e+03      87     120 ..     503     535 ..     486     546 .. 0.60

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00017
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                 l+il++G+sg GKTtl+++l
  CCD26210.1 146 LNILCVGQSGLGKTTLINSL 165
                 789**************998 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2
      AAA_24  87 rqnekaeskedkgdgkG.ygelaeefrrllkklqe 120
                 ++ +k   +++   +++  +e++e++++ lk+l+e
  CCD26210.1 503 EKEKKL--QKSETELFArHKEMKEKLQKQLKALEE 535
                 222222..244556667777777777777777766 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00063      0.75       1      62 [.     148     212 ..     148     237 .. 0.70
   2 ?   -0.0   0.1      0.96   1.1e+03      17      79 ..     428     492 ..     424     513 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00063
  RNA_helicase   1 iwlyGpsgeGKStlakeLakallkkl...klkkkdsvysrnpeddfwdgYtgqevvvidDfgqvk 62 
                   i+ +G+sg GK+tl+++L ++  ++    ++++++++ s n ++d  ++ ++++ +  dD  +++
    CCD26210.1 148 ILCVGQSGLGKTTLINSLFNSTFNDNnnnNDESEENTDSLNETNDNESQIEDEDENEQDDNDEKT 212
                   5679*************999888655444555556666666666666666666666666655544 PP

  == domain 2  score: -0.0 bits;  conditional E-value: 0.96
  RNA_helicase  17 eLakallkklklkkkdsvysrnpeddfwdgYtgqevvvidDfgqvkdee.nps.dlaelirlvss 79 
                    L+++ l++l + +++++y +  +++  +   +q+ +v+ +f  +  +  + +  +a l +l s 
    CCD26210.1 428 LLIRNYLEELRERTNNELYENYRSEKLIKLGIKQDNTVFKEFDPQARQLeETQlHEAKLAKLESE 492
                   57888888998999999998777777777777899999999988776654555444444444333 PP

>> DUF3987  Protein of unknown function (DUF3987)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0072       8.6      29      59 ..     137     168 ..     133     222 .. 0.64
   2 ?    0.1   7.8      0.27   3.2e+02      60     101 ..     508     554 ..     491     565 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.0072
     DUF3987  29 rgy.teplnLytlvvapsGerKSpvdklvlrp 59 
                 r++ ++  nL++l+v++sG +K+++ + + + 
  CCD26210.1 137 RKSiQKGFNLNILCVGQSGLGKTTLINSLFNS 168
                 55567788****************99765544 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.27
     DUF3987  60 leeieaelreeyeeelkeyeaekkaweaelealekkaakak.....e 101
                 l++ e el+++++e++++ +++ ka+e+++++le ++ ++      +
  CCD26210.1 508 LQKSETELFARHKEMKEKLQKQLKALEEKKHQLEMSISNQGssspiQ 554
                 67788999************************999999887655441 PP

>> SepSecS  O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.5   1.8e+03     321     366 ..     366     414 ..     337     418 .. 0.74
   2 ?    6.9   4.6    0.0018       2.2     270     326 ..     509     565 ..     476     568 .] 0.82

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.5
                 CCCCTHHHHHHHHHHHT...TECSSE.EE-SSTCECTTSSS-SSSEEEE CS
     SepSecS 321 eikkkarldlaseLfsr...kvtGargvrasdsklTshlkeyhsrYlki 366
                 +  ++++ ++as+L+      + G    +++ +++T + ++y+   ++i
  CCD26210.1 366 KLDDDETSTMASKLYESlpyAIVGSTNLVTNAKGETVRGRQYPWGIIEI 414
                 4445666778888887433379999999999999999999999988887 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0018
                 HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEESSSTT-SSEEEEE-CCCHCCCCTH CS
     SepSecS 270 skaykkllkeqkesfkllreklkklaeeveekllevpeNpissaltletldeikkka 326
                 +k   +l+ ++ke++++l+++lk l+e++ +  ++  +   ss ++ + ++++kkk+
  CCD26210.1 509 QKSETELFARHKEMKEKLQKQLKALEEKKHQLEMSISNQGSSSPIQQQQHQQQKKKG 565
                 6777899********************999888887667777888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3159  (0.176195); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                       122  (0.00680462); expected 17.9 (0.001)
Passed Fwd filter:                        34  (0.00189637); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.85u 0.32s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 3707.79
//
Query:       CCD26211.1  [L=865]
Description: hypothetical protein NDAI_0H00370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-20   71.4  10.9      2e-10   40.1   0.3    2.9  3  GIT_SHD   Spa2 homology domain (SHD) of GIT
  ------ inclusion threshold ------
      0.034   14.3   8.5       0.31   11.2   8.5    2.7  1  Cnn_1N    Centrosomin N-terminal motif 1
       0.57   10.0   6.0        1.4    8.7   4.9    2.4  2  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> GIT_SHD  Spa2 homology domain (SHD) of GIT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.3   3.3e-14     2e-10       1      28 [.      67      94 ..      67      95 .. 0.97
   2 !   37.4   1.3   2.4e-13   1.4e-09       1      29 []     122     150 ..     122     150 .. 0.97
   3 ?   -2.0   0.1      0.47   2.8e+03      23      28 ..     778     783 ..     776     784 .. 0.84

  Alignments for each domain:
  == domain 1  score: 40.1 bits;  conditional E-value: 3.3e-14
     GIT_SHD  1 ARqKLarLsnkqFeeLvtDVydEldRRe 28
                AR+KL++Ls  q++eL+tD ydEl+RR+
  CCD26211.1 67 ARSKLLKLSLPQLYELCTDAYDELQRRI 94
                9**************************7 PP

  == domain 2  score: 37.4 bits;  conditional E-value: 2.4e-13
     GIT_SHD   1 ARqKLarLsnkqFeeLvtDVydEldRRet 29 
                 AR+KL++Ls ++F +L+ DV++El+RR++
  CCD26211.1 122 AREKLSTLSESRFDDLLDDVFFELKRRHY 150
                 9**************************85 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.47
     GIT_SHD  23 EldRRe 28 
                 E++RR+
  CCD26211.1 778 EIIRRN 783
                 9****8 PP

>> Cnn_1N  Centrosomin N-terminal motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   8.5   5.1e-05      0.31      10      50 ..     377     419 ..     371     432 .. 0.91

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 5.1e-05
      Cnn_1N  10 dkLkKENFdLKLriyfLeerleklse..eqkeellkenielkv 50 
                 ++L+KEN  LK ++ +Le rl+k +e  + +e + k+n++ k+
  CCD26211.1 377 NELSKENEQLKNKLLELELRLKKQQEiqKCQEHVTKSNVQNKT 419
                 78************************98889999999999887 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.9   0.00024       1.4      19      47 ..     362     390 ..     356     405 .. 0.89
   2 ?   -2.6   0.1      0.81   4.8e+03      22      36 ..     399     413 ..     394     429 .. 0.64

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00024
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       DivIC  19 ykqlkqeiaalqaelaklkaeneeLeaev 47 
                 + ++++e+a l++++++l++ene+L+ ++
  CCD26211.1 362 ILDINKEMAHLTDKNNELSKENEQLKNKL 390
                 5689**********************876 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.81
                 HHHHHHHHHHHHHHH CS
       DivIC  22 lkqeiaalqaelakl 36 
                 ++qei++ q+++ k 
  CCD26211.1 399 KQQEIQKCQEHVTKS 413
                 455666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2184  (0.121814); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.81u 0.30s 00:00:01.11 Elapsed: 00:00:00.46
# Mc/sec: 5640.41
//
Query:       CCD26212.1  [L=260]
Description: hypothetical protein NDAI_0H00380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.1e-22   78.7   0.0    8.2e-22   77.7   0.0    1.5  1  Ribonucleas_3_3  Ribonuclease-III-like
    6.6e-09   36.3   0.0    1.8e-08   35.0   0.0    1.7  2  Ribonuclease_3   Ribonuclease III domain


Domain annotation for each model (and alignments):
>> Ribonucleas_3_3  Ribonuclease-III-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   9.1e-26   8.2e-22       3     122 ..      88     222 ..      86     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 77.7 bits;  conditional E-value: 9.1e-26
  Ribonucleas_3_3   3 elleqaltHkSfangrkghNerLefLGdavLklsvseyllekaekdege....ltklraslvseeslaeiAkelgLgkvlrl...........r 81 
                      ++l+q ltHkSfa+g+k++Ne+L+ LG++ Lk+  s + +++ ++++++     t   +slvs+++l+   k +gL+k++++           +
       CCD26212.1  88 NILLQCLTHKSFAHGTKPYNEKLNLLGSQFLKFRASVFSIRSNTEQNINlralGTPFNRSLVSKDTLSTYIKSIGLEKYIFWkkrdsnsiipiD 181
                      7899*****************************999999888666554422223344569***********************99999998876 PP

  Ribonucleas_3_3  82 kgeeetegsgrekvladaleAliGAiyldkgaevaqefvee 122
                       +++    +g+ +vl+++l ++iGAi +++g +++ ef+++
       CCD26212.1 182 TDQQIDTFNGEATVLSTILNSIIGAILITNGEQKTIEFINT 222
                      6666677788999**************************86 PP

>> Ribonuclease_3  Ribonuclease III domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.61   5.4e+03      34      34 ..      55      55 ..      12      96 .. 0.52
   2 !   35.0   0.0     2e-12   1.8e-08       1     105 []     108     212 ..     108     212 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.61
                    H CS
  Ribonuclease_3 34 l 34
                     
      CCD26212.1 55 T 55
                    2 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 2e-12
                     HHHHHHHHHHHHHHHHHHHHHHCTTSS..HHHH.HHHHHHHTSHHHHHHHHHCTTCHCCHCHH..............HHCCSTTCHCTSHHHHHH CS
  Ribonuclease_3   1 erLeflGDavlklaittylfetypdah..egrl.sklrsklvsnenlarlakklglpkflrasefdpprnwlppgyklsddekedddadkvladv 92 
                     e+L++lG ++lk+ ++ + ++   +++   + l + +  +lvs+++l++++k++gl+k++ +++ d ++ +      ++++ +  +++  vl+++
      CCD26212.1 108 EKLNLLGSQFLKFRASVFSIRSNTEQNinLRALgTPFNRSLVSKDTLSTYIKSIGLEKYIFWKKRDSNSIIPID---TDQQIDTFNGEATVLSTI 199
                     789******************5554443344445777*************************999988777764...666666688899****** PP

                     HHHHHHHHHHHCT CS
  Ribonuclease_3  93 vEAliGaiyldsg 105
                     + ++iGai++++g
      CCD26212.1 200 LNSIIGAILITNG 212
                     **********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1890.51
//
Query:       CCD26213.1  [L=596]
Description: hypothetical protein NDAI_0H00390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1434  (0.0799822); expected 358.6 (0.02)
Passed bias filter:                      375  (0.0209158); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4229.49
//
Query:       CCD26214.1  [L=366]
Description: hypothetical protein NDAI_0H00400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-08   34.4   2.6    1.9e-07   30.6   0.1    3.1  3  SH3_1     SH3 domain
    1.5e-07   31.1   0.0     0.0001   22.1   0.0    2.3  2  SH3_9     Variant SH3 domain
      6e-07   29.1   1.5    6.8e-06   25.7   1.5    2.3  1  SH3_2     Variant SH3 domain


Domain annotation for each model (and alignments):
>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.13   7.6e+02       1       7 [.      85      91 ..      85      96 .. 0.80
   2 !   30.6   0.1   3.2e-11   1.9e-07      10      38 ..     123     151 ..     120     156 .. 0.88
   3 ?    1.7   0.0     0.033     2e+02      37      47 ..     179     189 ..     173     190 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.13
                EESSSBE CS
       SH3_1  1 iAlYDYe 7 
                +AlYD+ 
  CCD26214.1 85 VALYDFY 91
                7****95 PP

  == domain 2  score: 30.6 bits;  conditional E-value: 3.2e-11
                 STTBXEBSTTEEEEEEEECSSSEEEEEET CS
       SH3_1  10 esdELsfkkGDviivleksedgWwkgrlk 38 
                 +  +Lsf++GD+i vl+k+ +gWw+g l+
  CCD26214.1 123 TNKHLSFQQGDTIYVLNKNSSGWWDGLLI 151
                 5789*********************9765 PP

  == domain 3  score: 1.7 bits;  conditional E-value: 0.033
                 ETTSTEEEEEE CS
       SH3_1  37 lkgtgkeGliP 47 
                 ++++ ++G++P
  CCD26214.1 179 NNNNVRRGWFP 189
                 555679***** PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.7e-08    0.0001      13      34 ..     127     148 ..     119     156 .. 0.88
   2 !    6.6   0.0    0.0011       6.8      37      48 ..     182     193 ..     170     194 .. 0.84

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 1.7e-08
       SH3_9  13 LsLqrGDvitvieesedgWleg 34 
                 Ls+q+GD+i+v+++ ++gW++g
  CCD26214.1 127 LSFQQGDTIYVLNKNSSGWWDG 148
                 9*************9*****99 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0011
       SH3_9  37 tGrtGlvPanyv 48 
                 + r+G++P++yv
  CCD26214.1 182 NVRRGWFPQTYV 193
                 669********9 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   1.5   1.1e-09   6.8e-06       9      55 ..     120     194 ..     114     196 .. 0.83

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.1e-09
                 -SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE.C..............................CCEEEEEGCGEE CS
       SH3_2   9 vgedkseLsfkkGdvikvlslgskdsdgwwegev.g..............................GrvGlfPsslve 55 
                 +++ + +Lsf++Gd+i+vl   +k+s gww g   +                               r+G+fP ++v+
  CCD26214.1 120 NSTTNKHLSFQQGDTIYVL---NKNSSGWWDGLLiMdsnnnnnnnnndtnnnntegdnhnnsnnnnVRRGWFPQTYVR 194
                 4456667************...**********9987899999999999999888888777777764444******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2457  (0.137041); expected 358.6 (0.02)
Passed bias filter:                      269  (0.0150036); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.93u 0.30s 00:00:01.23 Elapsed: 00:00:00.49
# Mc/sec: 2250.50
//
Query:       CCD26215.1  [L=1589]
Description: hypothetical protein NDAI_0H00410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-56  189.9   0.2    4.4e-56  189.9   0.2    3.9  4  RasGEF    RasGEF domain
    1.5e-18   67.0   0.1    1.5e-18   67.0   0.1    6.3  7  RasGEF_N  RasGEF N-terminal motif


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.9      0.33   2.9e+03      40     103 ..     200     225 ..     167     307 .. 0.57
   2 ?    0.1   0.3     0.089     8e+02     103     147 ..     326     368 ..     309     416 .. 0.80
   3 ?   -1.7   0.3      0.31   2.8e+03      33      75 ..     848     895 ..     819     901 .. 0.53
   4 !  189.9   0.2   4.9e-60   4.4e-56       3     176 ..    1265    1444 ..    1263    1445 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.33
      RasGEF  40 iarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfnslmailsaLqsspvsrLkk 103
                 ++ fn ls                                       + + + L++  +++L k
  CCD26215.1 200 TKCFNYLS--------------------------------------NLIVFTQLSCRLIQQLIK 225
                 33333333......................................333333333333333322 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.089
      RasGEF 103 ktweavskkslktleeleelmspennfknyrealkssasskpciP 147
                 kt + vs  +  + ++ +++++++nn  ny ++  s+++++ ++P
  CCD26215.1 326 KTKRFVS--TSSSTTNTSSIINNNNNNNNYTKRTISTSTNDTIVP 368
                 5666677..334446889999999999999777777767888888 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.31
      RasGEF  33 spnveaviarfnrls.nwva....seilseeslkkRakviekfikiak 75 
                 +++  +vi+ f +++ ++v     s+ + e+ +++R +++++  +++k
  CCD26215.1 848 RQEFLNVIDDFRNVCeKYVEisniSCFIVEQLIEERENLLNYAARMMK 895
                 244555666666666523323333333334446677777766666665 PP

  == domain 4  score: 189.9 bits;  conditional E-value: 4.9e-60
      RasGEF    3 Aeqltlieaelfskikpeellgsawsked....rspnveaviarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfnslmailsaLqs 95  
                  Aeqlt+ e+el+ +i+ +e+l+ aw ++      spn++++i+  n+l+n+v+++i++++++kkRak+ie+fi +a+ c++lnNf+s+ ai+saL s
  CCD26215.1 1265 AEQLTVREHELYLEINMFECLDRAWGSKYcnmgGSPNISKFISNANALTNFVSYTIVRHTDVKKRAKLIEYFIVVAQYCKELNNFSSMTAIVSALYS 1361
                  9************************9988655444************************************************************** PP

      RasGEF   96 spvsrLkktweavskkslktleeleelmspennfknyrealkssasskpciPflglyltdltfieegnpdtl..egk.iNfeKr 176 
                  sp++rLkktw+ ++ + +k+l++l++lm++++nf +yre ++ ++ + pciPf+g+yl+dltf+  gnp++l  +++ iNf+Kr
  CCD26215.1 1362 SPIFRLKKTWKLIPIEAKKVLRKLNNLMDSKKNFIKYRESIRGIK-DVPCIPFFGIYLSDLTFTFVGNPEYLhgSTDiINFSKR 1444
                  ********************************************6.*****************999******998888*****7 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.7      0.25   2.2e+03      59      97 ..       8      44 ..       2      50 .. 0.61
   2 ?   -3.0   2.6      0.96   8.6e+03      47      72 ..      58      81 ..      48     116 .. 0.46
   3 ?   -0.5   0.3      0.16   1.5e+03      50      60 ..     260     276 ..     198     316 .. 0.60
   4 ?   -8.2   8.2         2   1.8e+04      55      55 ..     397     397 ..     327     483 .. 0.52
   5 ?   -3.0   0.0      0.95   8.5e+03      63      95 ..     642     674 ..     620     677 .. 0.67
   6 !   67.0   0.1   1.6e-22   1.5e-18       1      94 [.    1023    1117 ..    1023    1129 .. 0.91
   7 ?   -1.0   0.4      0.23   2.1e+03      53      95 ..    1204    1246 ..    1140    1253 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.25
    RasGEF_N 59 sdesnswnsksssnirlrvlsvlkewvenhyydfsddka 97
                s   ns nsk+s+n + +v ++++   +n + +f +d +
  CCD26215.1  8 SR--NSRNSKNSKNNNNKVKNMFSNNTSNLILNFPNDDH 44
                22..55667777777777777777666666666666654 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.96
    RasGEF_N 47 eryeinppnnlesdesnswnsksssn 72
                 +y  +++nn++s+ sn+ n+++++n
  CCD26215.1 58 TTYSTKSSNNNNSS-SNK-NKNRNTN 81
                56643333333333.222.2222222 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.16
    RasGEF_N  50 e......inppnnlesd 60 
                         ++++n+++d
  CCD26215.1 260 MlkyelkTSSNSNTNND 276
                 03333332222222222 PP

  == domain 4  score: -8.2 bits;  conditional E-value: 2
    RasGEF_N  55 n 55 
                 +
  CCD26215.1 397 K 397
                 0 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 0.95
    RasGEF_N  63 nswnsksssnirlrvlsvlkewvenhyydfsdd 95 
                    + k+ ++++ ++l+++k+  ++ y++f+ d
  CCD26215.1 642 RISKRKTLYPLNYNTLNLMKKISKEIYDKFDGD 674
                 333445556688899999999999999988765 PP

  == domain 6  score: 67.0 bits;  conditional E-value: 1.6e-22
    RasGEF_N    1 qvkagtlekLierLtskrlldddfletFLltyrsFttpaeLlekLieryeinppnnlesdesnswnsksssnirlrvlsvlkewvenhyy.dfsd 94  
                  ++++gt e Lie+Lts++l d+ f  ++L+t+rs +t++e++ +Li ry+ +pp++l+ d++n w++k+  +i++rv+ ++++ +++++  ++ +
  CCD26215.1 1023 KIRGGTKESLIEHLTSHQLIDPAFSVVMLITFRSIMTTKEFFFALIYRYNLSPPEGLSFDDYNIWIEKKLMPIKCRVITIMNTFLQRYWTpNYLE 1117
                  699**************************************************************************************954433 PP

  == domain 7  score: -1.0 bits;  conditional E-value: 0.23
    RasGEF_N   53 ppnnlesdesnswnsksssnirlrvlsvlkewvenhyydfsdd 95  
                  ++nn++s+ s++ + +sssn +l+ l+ l ++v  h+ +  ++
  CCD26215.1 1204 SNNNNKSSISSNPDYHSSSNSSLNALKNLTSPVLLHPTNAATN 1246
                  2333333322444667777788899999998998888865555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1589 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2412  (0.134531); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.36u 0.30s 00:00:01.66 Elapsed: 00:00:00.53
# Mc/sec: 8946.05
//
Query:       CCD26216.1  [L=344]
Description: hypothetical protein NDAI_0H00420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-67  227.4   1.1    1.8e-67  227.1   1.1    1.1  1  Gtr1_RagA  Gtr1/RagA G protein conserved region
    0.00072   19.6   0.0     0.0019   18.2   0.0    1.8  2  AAA_14     AAA domain
     0.0076   15.7   0.1      0.034   13.6   0.0    2.0  2  Arf        ADP-ribosylation factor family
  ------ inclusion threshold ------
       0.01   15.0   0.0      0.039   13.1   0.0    1.8  2  DUF815     Protein of unknown function (DUF815)
      0.068   12.6   0.0       0.15   11.5   0.0    1.6  1  SRPRB      Signal recognition particle receptor beta subunit


Domain annotation for each model (and alignments):
>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.1   1.1   5.1e-71   1.8e-67       2     232 .]      14     237 ..      13     237 .. 0.97

  Alignments for each domain:
  == domain 1  score: 227.1 bits;  conditional E-value: 5.1e-71
   Gtr1_RagA   2 vLLmGksgsGKtsmrsiiFdnylardtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesreleedletlke 100
                 +LLmG ++ GK+s+++++F+n+++ dtl+l++t++ + +++  +  ++l +++++Gq +++e +  +++e++f++vg+l+yV+D++ +e+ +++++l  
  CCD26216.1  14 ILLMGLRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS--YDSERLFKSVGALVYVIDSQ-DEYLSAITNLAM 107
                 8*************************************998..7899****************6..99******************.88********** PP

   Gtr1_RagA 101 ilealrqyspeakvfvlihKmDliqedereeifeerkeeireeiekleke..eiqffaTSiwdeslykAfssivqklipnldvleelLkklaeaieaee 197
                 i+e++++++p ++++vlihK+D+++ed + ++++e+++++ ee+ +l+ +  +++f++TSi+d+s+y+Afs+ivqklip++++le++L++l++++++e+
  CCD26216.1 108 IMEYAYKVNPSINIEVLIHKVDGLNEDFKVDAQREIMQRTGEELLELGLDgvQVSFYLTSIFDHSIYEAFSRIVQKLIPEISYLENMLDNLIQHSKIEK 206
                 *********************************************99988889********************************************** PP

   Gtr1_RagA 198 vlLferstflviatvsskeaeekdasrfekvseii 232
                 ++Lf+ +++++++t+s ++++    +++e ++e++
  CCD26216.1 207 AFLFDINSKIYVSTDS-NPVD---IQTYEVCAEFV 237
                 ****************.8887...89*****9986 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   5.3e-07    0.0019       4      47 ..      13      54 ..      10     111 .. 0.81
   2 ?   -2.4   0.1       1.2   4.5e+03      28      39 ..     210     221 ..     174     255 .. 0.62

  Alignments for each domain:
  == domain 1  score: 18.2 bits;  conditional E-value: 5.3e-07
      AAA_14  4 ilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkla 47
                +++++G+Rr+GK+ ++k ++++   ++ ++ly++  +++  ++ 
  CCD26216.1 13 MILLMGLRRCGKSSICKVVFHNM--QPLDTLYLESTSNPSLEHF 54
                789****************9665..5899999977666554433 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.2
      AAA_14  28 vkkesilyinld 39 
                  + +s +y++ d
  CCD26216.1 210 FDINSKIYVSTD 221
                 333344444444 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   9.5e-06     0.034      14     126 ..      11     129 ..       3     184 .. 0.68
   2 ?   -0.7   0.1      0.24   8.6e+02     101     139 ..     192     230 ..     187     265 .. 0.77

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 9.5e-06
                 EEEEEEEESTTSSHHHH....HHHHHHSSCEECSSSSSEEEEEEEETTEEEEEEEE-SSGG.GGGGGG..GGCTTESEEEEEEETT-CTTHHHHHHHHH CS
         Arf  14 elrilllGLDnaGKtTi....lkklkleelvttvPTigfnveeleiknlkftvwDvGGqek.lRplWk..nYfektdavifvvDsadreRleeakeeLk 105
                 ++ ill+GL   GK+ i     ++++  ++     T  +  e+ ++  +++ v ++ Gq +   p ++  + f+++ a+++v+Ds+d+    +a ++L+
  CCD26216.1  11 KAMILLMGLRRCGKSSIckvvFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNyFEPSYDseRLFKSVGALVYVIDSQDEYL--SAITNLA 106
                 5679***********9822223556666666688999999999875.79*********96526788762258*************99753..4445565 PP

                 HHCTSG..CCTTSEEEEEEE-TT CS
         Arf 106 alleee..elkevallvlaNKqD 126
                  ++e     + ++ + vl  K D
  CCD26216.1 107 MIMEYAykVNPSINIEVLIHKVD 129
                 55554310333555566666666 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.24
                 HHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHH CS
         Arf 101 keeLkalleeeelkevallvlaNKqDlpealseeelrel 139
                 ++ L++l+++++++++ l  +  K+ ++++ +  ++++ 
  CCD26216.1 192 ENMLDNLIQHSKIEKAFLFDINSKIYVSTDSNPVDIQTY 230
                 677999999999999999988888888888777777665 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.1e-05     0.039      54     100 ..      12      59 ..       2      67 .. 0.79
   2 ?   -1.6   0.0      0.35   1.3e+03     191     213 ..      89     111 ..      87     126 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.1e-05
      DUF815  54 nnvLLwGarGtGKSslvkallneyaeeg.Lrlievekedlkelpklve 100
                   +LL+G r +GKSs++k ++++++    L l   ++ +l+++++l++
  CCD26216.1  12 AMILLMGLRRCGKSSICKVVFHNMQPLDtLYLESTSNPSLEHFSTLID 59 
                 569******************999875447777777777777777765 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.35
      DUF815 191 gFykldqeeYleiveklakklgl 213
                  +   +q+eYl+ +++la  ++ 
  CCD26216.1  89 VYVIDSQDEYLSAITNLAMIMEY 111
                 56667899***999998865544 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.2e-05      0.15       4      86 ..      12      95 ..       9     125 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 4.2e-05
                -EEEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG....GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETT CS
       SRPRB  4 pavllvGlsdsGKTslftrLttdsvkktvtSqessaalkv.ksekgskltliDfPGheklrqklleklkaksslkglvfvvDSt 86
                 ++ll+Gl  +GK s+ + +  +        +es++  ++ + +    l+++++PG+ +      ++ +  +s+ +lv+v+DS 
  CCD26216.1 12 AMILLMGLRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLeHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQ 95
                679*************99988885444444444444444411255677888999***9999999999999999*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      357  (0.0199119); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2592.07
//
Query:       CCD26217.1  [L=738]
Description: hypothetical protein NDAI_0H00430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-50  171.9   0.3    2.2e-50  171.2   0.3    1.4  1  MIF4G     MIF4G domain
    1.1e-26   92.8   1.7    1.8e-26   92.1   0.2    2.3  2  eIF_4G1   Eukaryotic translation initiation factor 4G1
  ------ inclusion threshold ------
        1.8    9.6   0.0        1.8    9.6   0.0    3.2  3  DUF1484   Protein of unknown function (DUF1484)


Domain annotation for each model (and alignments):
>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   0.3   3.7e-54   2.2e-50       1     212 []     386     629 ..     386     629 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.2 bits;  conditional E-value: 3.7e-54
                 HHHHHHHHHCHTTTTHHHHHHHHHHHHHCS....CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSH..............HHHHHHHHHHHHH CS
       MIF4G   1 lkkvkgilnklskenfevlikqllklamdd....dknelkevielifekaveepsfsplyarlcgklnsrfq..............qnFrikllnklqe 81 
                 ++k+k++lnkl+ e+f+++  +++++a+++    ++++lk vie+if ka++ep++s++ya+lcgk++++++              + + ++l+++++ 
  CCD26217.1 386 ERKMKSLLNKLTLEKFDTISTDIINIANQSkwetQGETLKIVIEQIFHKACDEPHWSSMYAQLCGKVVKELSpeisdetnegktgpKLILHYLVARCHT 484
                 69************************************************************************************************* PP

                 HHHHHC...............-S-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGCCCCSCCHSCHHHHHHHHHHHHHHHHHHH CS
       MIF4G  82 efekry...............eleneleenedgnrrrrlglvrflgelfklkmltskilldclkellssltketaddppqdleeieilltllttigktl 165
                 ef+k +               e+++ ++++++ ++rr lglvr++g+l++l++lt k++++c+++l+++lt+      ++++e++e +++lltt+g+++
  CCD26217.1 485 EFQKGWsdklptnedgsplepEMMSDEYYQAAAAKRRGLGLVRLIGFLYCLNLLTGKMMFECFRRLMKDLTD------NPSEETLESVVELLTTVGEQF 577
                 ************************************************************************......78******************* PP

                 C........CCHHHHHHHHHHHHHHHHHHHCCHCSSSSHHHHHHHHHHHHHHHTT CS
       MIF4G 166 e........nnekakkeldqffkriqkiledatrqelssrirfmlkdlielkknk 212
                 e        ++ + +++ld +f+ + + +e     ++s ri+f l d+ el+++k
  CCD26217.1 578 ErdsfragdATLEGSALLDSLFQLLDNVIET---GKISNRIKFKLIDIKELREDK 629
                 *******************************...******************986 PP

>> eIF_4G1  Eukaryotic translation initiation factor 4G1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.2   3.1e-30   1.8e-26       1      70 []     180     249 ..     180     249 .. 0.97
   2 ?   -3.0   0.1       1.4   8.6e+03       4      26 ..     635     657 ..     633     660 .. 0.83

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 3.1e-30
     eIF_4G1   1 eeekkaeeeptisaflesLksArpiediysvkYPegiesPdpalnkeakkyrYdpdFLLQFkdvvkekpd 70 
                 eee+ ++ ++t+s++le+Lk++ pi+diys+kYPegie+P+p ++ke++ky+Y+p+F+LQFkd +k+k d
  CCD26217.1 180 EEEEIDDGSMTVSKLLERLKEVPPIDDIYSFKYPEGIEGPNPIYKKENVKYTYGPTFILQFKDRFKVKAD 249
                 58999**************************************************************986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.4
     eIF_4G1   4 kkaeeeptisaflesLksArpie 26 
                 kk++ + tis++ e  + Ar+++
  CCD26217.1 635 KKNDGPKTISQIHEEEERARQLK 657
                 78899999999999999999885 PP

>> DUF1484  Protein of unknown function (DUF1484)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.1      0.41   2.4e+03      16      41 ..      26      51 ..      22      78 .. 0.73
   2 ?   -1.5   1.0      0.84     5e+03       6      55 ..      91     140 ..      86     145 .. 0.68
   3 ?    9.6   0.0    0.0003       1.8      16      85 ..     546     613 ..     536     628 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.41
     DUF1484 16 liaqLaeqlakkdkaaaresAatvaq 41
                 i q ++  a  +k+ ++e Aa++a 
  CCD26217.1 26 FIEQVKARKAALEKRRQEEAAAAAAA 51
                56777777777777777777666554 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.84
     DUF1484   6 qllalarlreliaqLaeqlakkdkaaaresAatvaqletvsediedavee 55 
                 ++l++a + +l  q a+ +++     ++++  ++ +++++++d e+++ e
  CCD26217.1  91 KELTFAERLKLKKQAANAASNTTAEGETKPDPAAEEPKSTATDKEETITE 140
                 46788877777777777777666665666666666677888888887766 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0003
     DUF1484  16 liaqLaeqlakkdkaaaresAatvaqletvsediedaveeaiaqLlnvsagLqgiLqLLdLqsdralesr 85 
                  + +L+++l+  d   +++    v  l tv+e+ e     a +  l++sa L+++ qLLd   ++   s+
  CCD26217.1 546 CFRRLMKDLT--DNPSEETLESVVELLTTVGEQFERDSFRAGDATLEGSALLDSLFQLLDNVIETGKISN 613
                 5667777777..5555555556677789*******************************95555555455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2041  (0.113838); expected 358.6 (0.02)
Passed bias filter:                      619  (0.0345251); expected 358.6 (0.02)
Passed Vit filter:                       126  (0.00702772); expected 17.9 (0.001)
Passed Fwd filter:                        53  (0.0029561); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.32u 0.33s 00:00:01.65 Elapsed: 00:00:00.50
# Mc/sec: 4427.73
//
Query:       CCD26218.1  [L=214]
Description: hypothetical protein NDAI_0H00440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-23   81.7   0.0    2.3e-18   66.7   0.0    2.0  2  Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal dom


Domain annotation for each model (and alignments):
>> Glyco_tran_28_C  Glycosyltransferase family 28 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.4e-06     0.061       1      44 [.       6      51 ..       6      72 .. 0.84
   2 !   66.7   0.0   1.3e-22   2.3e-18      55     163 ..     104     207 ..      81     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 3.4e-06
                     -EEEEE-.SSSHHHHHCCCTSHHHHHHHH.HHHHCHHHCCT-EEC- CS
  Glyco_tran_28_C  1 tilVtGG.SqgaeaLnelvlselkllelk.srelqvlhqtGkrele 44
                     t++Vt+G ++++++L+e+v  e++  e   ++ + ++ q+G +++ 
       CCD26218.1  6 TLFVTCGaTVPFPDLVECVINEKFIVEIIkNGYTRLVVQFGTGYES 51
                     79**********************9998867789999999988554 PP

  == domain 2  score: 66.7 bits;  conditional E-value: 1.3e-22
                      CEEEEEESSSSHHHHHHHH-.EEEECS-CHHHHHHHHTT--EEEE--TT....S-HHHHHHHHHHHHHHSSEEEE-S.TTCHHHHHHHHCCS-- CS
  Glyco_tran_28_C  55 lkvevfefidkmaeaikaad.LvIsRAGagtiaEllalgkplIlvplpeaaenhqdnNakelekagaalvleqkelt.pekLeeallelaaekl 146
                        +  f  + + +++ik+   LvIs+AG+g+i+++l+l kplI++++ +    ++dn++++++++++ +++  ++ +  ++L+e+ +e++  + 
       CCD26218.1 104 FSIVGFGISMNVEQYIKDNVdLVISHAGTGSILDSLKLKKPLIVCVNTS----LMDNHQEQIANKFGSMGYVLACHPkLDELIEKFDESQVYEF 193
                      456778889999999997544****************************....***********************878889999998888888 PP

                      -S---SSCH..CHHHHH CS
  Glyco_tran_28_C 147 rlaekskasaaskfadl 163
                      +++++sk+    kf++l
       CCD26218.1 194 KEFPTSKN---VKFENL 207
                      88888888...455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      344  (0.0191868); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1702.44
//
Query:       CCD26219.1  [L=183]
Description: hypothetical protein NDAI_0H00450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-05   22.4   1.4    7.2e-05   22.2   1.4    1.2  1  DUF2046        Uncharacterized conserved protein H4 (DUF2046)
    0.00058   20.5   1.4      0.001   19.7   1.4    1.6  1  FXMRP1_C_core  Fragile X-related 1 protein core C terminal
     0.0067   16.5   3.4     0.0096   16.0   3.4    1.3  1  SYCE1          Synaptonemal complex central element protein 1
  ------ inclusion threshold ------
      0.044   12.3   1.7      0.046   12.2   1.7    1.1  1  Herpes_UL6     Herpesvirus UL6 like
       0.24    8.8   4.1       0.27    8.6   4.1    1.0  1  BROMI          Broad-minded protein


Domain annotation for each model (and alignments):
>> DUF2046  Uncharacterized conserved protein H4 (DUF2046)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   1.4     2e-08   7.2e-05     162     206 ..      47      89 ..       5     118 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 2e-08
     DUF2046 162 lrrekvelentleqeqealvnrlWkrldkleaekrllqekldqpv 206
                 l   + e+ n +e+eq+a+v +l k +d+l  e   l+e+l+q+ 
  CCD26219.1  47 L--SREEIINEMENEQDAIVVKLLKEIDQLKMENLYLKEQLNQKN 89 
                 2..23467799*******************************985 PP

>> FXMRP1_C_core  Fragile X-related 1 protein core C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   1.4   2.8e-07     0.001       5      49 ..      68     115 ..      65     181 .. 0.74

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 2.8e-07
  FXMRP1_C_core   5 LkEVeqLrlErLqIDeqLRqigggsrppesnr...sdkekgystDees 49 
                    LkE++qL++E+L + eqL q ++  r  +       +k+ + +tD+e 
     CCD26219.1  68 LKEIDQLKMENLYLKEQLNQKNQCLRRNSIDCgarLNKNSNNITDNEC 115
                    9*****************998877766533334443444444444443 PP

>> SYCE1  Synaptonemal complex central element protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   3.4   2.7e-06    0.0096      25      79 ..      54     108 ..      35     126 .. 0.76

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 2.7e-06
       SYCE1  25 seELgeaqalkealkrElDsLnaEkvhLeevlnkKqealriLqlhcqekeseaqr 79 
                 +e  +e  a+   l +E+D+L+ E++ L+e ln+K++ lr   + c  + ++ + 
  CCD26219.1  54 NEMENEQDAIVVKLLKEIDQLKMENLYLKEQLNQKNQCLRRNSIDCGARLNKNSN 108
                 333356677888899************************9988888877665554 PP

>> Herpes_UL6  Herpesvirus UL6 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   1.7   1.3e-05     0.046     355     429 ..      45     119 ..       6     153 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 1.3e-05
  Herpes_UL6 355 eqglkksvsnsvikcleeqineqfdtiekLkkenelllkklkelekeLerlreeakkeakarevdlltsstdasl 429
                 ++  ++++ n++ +  +  + +++++i++Lk en  l+++l+++++ L+r+  +  +  ++++++++ ++ + + 
  CCD26219.1  45 RRLSREEIINEMENEQDAIVVKLLKEIDQLKMENLYLKEQLNQKNQCLRRNSIDCGARLNKNSNNITDNECAITT 119
                 333444555555555556799******************************877776555555555544444333 PP

>> BROMI  Broad-minded protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.1   7.5e-05      0.27      56     180 ..      10     131 ..       1     142 [. 0.78

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 7.5e-05
       BROMI  56 lGsvieeeteklts.eenqaegsgqdtlvqavtkktreskeykeliqslknvmmvvveslinkfeedqlrkeeldrkekkeqssskltdncsdsdssfn 153
                 +  +i   t++ t+ +e +++ s+  tl     +k r s+  +e+i+++ n+  ++v  l+++   dql+ e+l  ke+ +q+++ l  n  d+++ +n
  CCD26219.1  10 INKMISSTTQRPTIiSERHNSLSKPSTLNVIPKQKRRLSR--EEIINEMENEQDAIVVKLLKE--IDQLKMENLYLKEQLNQKNQCLRRNSIDCGARLN 104
                 5566777777666415556777777777555555555555..589999999998888888875..5889999999************************ PP

       BROMI 154 qsyaflkqeqlqviaekldpskPkevr 180
                 ++++ +++++  +  ++ d+s  ++v 
  CCD26219.1 105 KNSNNITDNECAITTDEEDSSSHIDVP 131
                 *******************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1302  (0.0726198); expected 358.6 (0.02)
Passed bias filter:                      477  (0.0266049); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1343.05
//
Query:       CCD26220.1  [L=755]
Description: hypothetical protein NDAI_0H00460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.49   10.5   2.2         12    6.1   0.3    2.7  2  Spt4            Spt4/RpoE2 zinc finger


Domain annotation for each model (and alignments):
>> Spt4  Spt4/RpoE2 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.3   0.00066        12       9      27 ..      23      41 ..      19      52 .. 0.81
   2 ?    3.3   0.1     0.005        90       9      26 ..      54      72 ..      46      83 .. 0.77

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.00066
        Spt4  9 lvktedqFeeegCpnCeil 27
                ++k++++F+++ Cp C ++
  CCD26220.1 23 TIKQTKKFTSTVCPTCVTF 41
                699*************333 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.005
        Spt4  9 lvktedqFeeegCpnC.ei 26
                ++kt+++ ++++Cp C +i
  CCD26220.1 54 TIKTTKKITSTICPTCvTI 72
                699*************333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1644  (0.091695); expected 358.6 (0.02)
Passed bias filter:                      255  (0.0142228); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.29s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 5209.37
//
Query:       CCD26221.1  [L=891]
Description: hypothetical protein NDAI_0H00470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-53  178.4  19.8    2.1e-31  108.5   2.3    3.9  3  PEMT      Phospholipid methyltransferase
     0.0016   18.2   0.0     0.0034   17.2   0.0    1.5  1  HECW_N    N-terminal domain of E3 ubiquitin-protein ligase HE
  ------ inclusion threshold ------
      0.031   14.8   0.2       0.24   12.0   0.2    2.5  1  SKICH     SKICH domain


Domain annotation for each model (and alignments):
>> PEMT  Phospholipid methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   1.4   5.5e-26   3.3e-22       1     105 [.     223     328 ..     223     329 .. 0.95
   2 ?    1.6   0.6     0.061   3.6e+02      57      86 ..     374     403 ..     372     412 .. 0.83
   3 !  108.5   2.3   3.5e-35   2.1e-31       2     104 ..     479     588 ..     478     590 .. 0.96

  Alignments for each domain:
  == domain 1  score: 78.9 bits;  conditional E-value: 5.5e-26
        PEMT   1 lrlilGlllialglllvlssiealgefgtfygdfFl.elmdklvtsGiYrylnnPeyvgstlgflGlaLitgsaaglllallvllvylialkfvEephl 98 
                 +++ilG+lli+++++  + +++ +++f ++ gdfF+ + +++l+ +  ++++ +P+y  ++lg++Gl+Li + +++ll++++ +++ +++lk+vE ph+
  CCD26221.1 223 WKIILGTLLIVFNIWAKIDAHRVIKDFAWYWGDFFFlQINSTLIFDVCFNISPHPMYSIGYLGYYGLSLICNDYKVLLVSIWGHFLQFLFLKYVESPHI 321
                 689******************************99835566********************************************************** PP

        PEMT  99 akiYgkr 105
                 ++ Yg++
  CCD26221.1 322 ERTYGTE 328
                 ****985 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.061
        PEMT  57 vgstlgflGlaLitgsaaglllallvllvy 86 
                 vgs+++++ +a++t+    lll+l++++  
  CCD26221.1 374 VGSVISIITWAILTNPNDLLLLTLTFTFKL 403
                 89*************999999998887755 PP

  == domain 3  score: 108.5 bits;  conditional E-value: 3.5e-35
        PEMT   2 rlilGlllialglllvlssiealgefgtfygdfFlelmd......klvtsGiYrylnnPeyvgstlgflGlaLitgsaag.lllallvllvylialkfv 93 
                 +li+Glll+ l+++ + ++  a+++fg+fygdfFl +        kl+++GiYrylnnPe +++++g++ ++L+t++a+  ++l+ll++++++i++kf+
  CCD26221.1 479 KLIFGLLLCSLQIWSNSEINLAISDFGWFYGDFFLTNYIptknarKLTSQGIYRYLNNPETIFGIIGIWSTVLMTNFAWEnIILSLLWTITNFIMIKFI 577
                 5799*******************************7766888999**********************************99****************** PP

        PEMT  94 EephlakiYgk 104
                 E+ph+ kiYg 
  CCD26221.1 578 EKPHIMKIYGS 588
                 *********97 PP

>> HECW_N  N-terminal domain of E3 ubiquitin-protein ligase HECW1 and 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.7e-07    0.0034      11     100 ..     684     775 ..     678     782 .. 0.67

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.7e-07
      HECW_N  11 sdsrssLtvskneltlgksqslvisWDikee.vdaeDWiGlylidetnsen.fldyknrgvngtrkG...qivwkvdaesefteaetkiCFkYYh 100
                 +++ s L + ++++     + + i W +  e  d++DWiGly++ +t  ++ +  +++ g +++ +G   + v  +  ++ef + e+ +  +YY 
  CCD26221.1 684 DEEVSALPATNSSYLP---NPISIKWKLPIElYDETDWIGLYNVLDTRADReITRTSSFGHKSFTTGaknKHVLSLRKSEEFVKGEICLIQHYYI 775
                 5566777776666644...678999*997551699*******98777665515556666777766662114555667777888877766677885 PP

>> SKICH  SKICH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2     4e-05      0.24      29     103 .]     714     802 ..     692     802 .. 0.65

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 4e-05
       SKICH  29 sskDwiGlfkvgfkslkdyvtyvwv..........keeeeeeseeekqvlf...............kaselpkeekeeeYqlvYvs.kkgsvlGvsepF 101
                  ++DwiGl+ v  + ++  +t +            k         +k+vl                +++++ +    + Y + Y s ++++vl +s+pF
  CCD26221.1 714 DETDWIGLYNVLDTRADREITRTSSfghksfttgaK---------NKHVLSlrkseefvkgeicliQHYYICE---PGIYEFRYHSkNSHKVLLISTPF 800
                 578*******97666666666666665444444441.........3333323443333444433324333333...489*******999********** PP

       SKICH 102 qf 103
                 q+
  CCD26221.1 801 QV 802
                 96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      278  (0.0155056); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.29s 00:00:00.93 Elapsed: 00:00:00.45
# Mc/sec: 5947.42
//
Query:       CCD26222.1  [L=515]
Description: hypothetical protein NDAI_0H00480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.5e-23   81.2   2.4    5.5e-23   81.2   2.4    3.3  3  CSTF2_hinge   Hinge domain of cleavage stimulation factor sub
     0.0078   17.0   1.3     0.0078   17.0   1.3    3.4  4  DUF5339       Family of unknown function (DUF5339)
  ------ inclusion threshold ------
        6.4    6.7  44.9          7    6.5   3.7    2.1  2  TFIIA         Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> CSTF2_hinge  Hinge domain of cleavage stimulation factor subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   2.4   9.2e-27   5.5e-23       2      81 .]     197     278 ..     196     278 .. 0.94
   2 ?   -2.8   0.7       1.5   8.9e+03       2      18 ..     364     380 ..     364     391 .. 0.64
   3 ?   -0.5   0.1      0.28   1.7e+03      37      53 ..     471     487 ..     451     495 .. 0.73

  Alignments for each domain:
  == domain 1  score: 81.2 bits;  conditional E-value: 9.2e-27
  CSTF2_hinge   2 lPqgvqlpp.glsapdaIsktLsslppeqllellsqlKalaqqnp....sqarelLkqnpqLayAllqalllmglvdpdvvtkvl 81 
                  lP   +l   +ls +d++s++Ls++pp ql+e++s+lK+l++q++    sq++++Lk+n +L++A+ qall+mgl++++v++kvl
   CCD26222.1 197 LP---ELIDgSLSIKDEVSNNLSKIPPLQLIEIISNLKILSTQDSinrsSQIETFLKSNSNLTLAISQALLEMGLINYNVINKVL 278
                  56...55566899*********************************************************************986 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 1.5
  CSTF2_hinge   2 lPqgvqlppglsapdaI 18 
                  lPq++q+++++++p + 
   CCD26222.1 364 LPQQQQPQQPQHQPVQM 380
                  57777766666655444 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.28
  CSTF2_hinge  37 lKalaqqnpsqarelLk 53 
                  lK+l +++++ ++++L+
   CCD26222.1 471 LKQLPENQQEMIKQVLS 487
                  56666666666666665 PP

>> DUF5339  Family of unknown function (DUF5339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.3   7.5e+03      31      47 ..      97     113 ..      92     116 .. 0.84
   2 ?   -4.4   1.9         3   1.8e+04      23      29 ..     148     154 ..     143     160 .. 0.42
   3 ?   -5.0   4.7         3   1.8e+04      21      27 ..     409     415 ..     400     420 .. 0.38
   4 !   17.0   1.3   1.3e-06    0.0078      11      52 ..     461     502 ..     458     504 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.3
     DUF5339  31 aikkqleqsKkqilalp 47 
                 ++k +l+qs++ + +l+
  CCD26222.1  97 NYKEKLSQSYTNVEELK 113
                 68999999999998886 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 3
     DUF5339  23 pgtktqa 29 
                  ++++q 
  CCD26222.1 148 SQQQQQQ 154
                 2222222 PP

  == domain 3  score: -5.0 bits;  conditional E-value: 3
     DUF5339  21 kqpgtkt 27 
                 +q+++++
  CCD26222.1 409 QQQQQQQ 415
                 1111111 PP

  == domain 4  score: 17.0 bits;  conditional E-value: 1.3e-06
     DUF5339  11 evdkliakaekqpgtktqadaikkqleqsKkqilalpkeqQe 52 
                  +d+ i +++ ++ ++ q ++ik+ l+ sK+qi+ lp++qQ 
  CCD26222.1 461 TYDDNINYIKLKQLPENQQEMIKQVLSLSKDQIKLLPNDQQS 502
                 5788888888888999*************************6 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.7    0.0012         7     122     245 ..      43     185 ..       6     244 .. 0.53
   2 ?    5.3  34.2    0.0029        17      70     282 ..     286     496 ..     227     511 .. 0.44

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0012
       TFIIA 122 leppvqipagvtlqtasgqlykvnv..qasgaqqiaaqplqqvvqq..sqgsaaqssvaalqaqsqqaqalaepqqqlekq.................. 198
                 + p ++i+  +  +t +  l+++n   ++++  ++a + l q+     + +++++s+ ++  +q + ++++ ++ +++  +                  
  CCD26222.1  43 SGPIIEIIPKTDPRTGK--LTSINYdyKTNKDCERAYNTLSQINGLpfQMEKVISSNYKEKLSQ-SYTNVEELKLNRD--Kfpwemnldlpfdmitevp 136
                 55555555544444433..444444558888888888888888332443344444333332222.2223333333332..2446677888888888777 PP

       TFIIA 199 .........qqqqqqqqqqqqqq.qvqqqqqeesqqaqqasqeqvagsqvessqtdg 245
                          +q+qqqqqqq+ ++  + ++  +         +++++++ ++++++d 
  CCD26222.1 137 lprrplmtnKQSQQQQQQQNYSTnSIGNNDSQM--------NRNTSKPLSDNNTQDT 185
                 775554432222222222222222222222211........1112222233333333 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0029
       TFIIA  70 qalqasaaaasqapastsqslpslvipagksvqslta..nssaataatfslpakleppvqipagvtlqtasgqlykvnvqasgaqqiaaqplqqvvqq. 165
                 + +++s++  s+ + ++++++ + + +++ s++   +  +++++  +++++p+++        g+  +++ + + +v+  + g ++i   p+qq+ qq 
  CCD26222.1 286 RINSSSTT--STVN-NNNNNNNNSSSESSTSATP--MlnMNTQQPPMNMNIPMGMGM------GMPMPVPMPMNPSVTPPTLGNTNINVLPQQQQPQQp 373
                 22222222..1111.1111111111111111111..122333344444444443333......333333333333333344444444444444444443 PP

       TFIIA 166 sqgsaaqssvaalqaq.sqqaqalaepqqq.lekqqqqqqqqqqqqqqq.qvqqqqqeesqqaqqasqeqvag.sqvessqtdgaedaleeespv.... 256
                 ++++++ +++ ++    +q    + +pq q  ++qqqqqqqqqqq ++   +  q q+++ q++ +    +++ + v+++q   +  +++ + ++    
  CCD26222.1 374 QHQPVQMNANVHMGMVpPQPPMNMGMPQRQpVAAQQQQQQQQQQQSHPPvFIPPQFQAPPLQNSPP--PLFPPaPPVAQPQPPRPIIKETYDDNInyik 470
                 333443334444443333344455555555444445556666666666656666666422222222..2555545555555444443333333333433 PP

       TFIIA 257 legelsaeeeagaqkeelsreeidri 282
                 l+  +++++e  +q  +ls+++i+ +
  CCD26222.1 471 LKQLPENQQEMIKQVLSLSKDQIKLL 496
                 44444444444444444555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1956  (0.109097); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 3674.44
//
Query:       CCD26223.1  [L=305]
Description: hypothetical protein NDAI_0H00490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.6e-09   37.0   0.1    0.00085   19.1   0.0    3.2  2  His_Phos_1  Histidine phosphatase superfamily (branch 1)
     0.0073   16.1   0.0      0.015   15.2   0.0    1.4  1  SprT-like   SprT-like family


Domain annotation for each model (and alignments):
>> His_Phos_1  Histidine phosphatase superfamily (branch 1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   9.4e-08   0.00085      15      60 ..      90     143 ..      59     145 .. 0.75
   2 !   14.2   0.0   2.9e-06     0.026     101     168 ..     223     285 ..     164     300 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 9.4e-08
                 .....TT----B-HHHHHHHHHHHHH.....HTTS---EE..EE-SSHHHHHHH CS
  His_Phos_1  15 gr.lqgrtdvpLteeGreqAealaer.....lagepidai..ysSplkRarqTa 60 
                 g  ++ + d++Lt++G++q++ ++e      +++ ++     +sSpl+R+ +T 
  CCD26223.1  90 GDeFSNWVDSKLTPLGERQVQIIGETvllpmIKQLGFLPHvfFSSPLRRCLETF 143
                 334889*******************96655555544443378**********95 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHH-GGG-BS-BHHHHHHHHHHHHHHHHHHTTTSE..EEEEE-HHHHHHHHHHHHT--GGGGGG CS
  His_Phos_1 101 leawlrdpadvrppggEsledvaaRvaaaleelaarheget..vlvVsHggvirallarllglpleelrr 168
                  + w + p        Es  ++ +R++++l el ++  +e+  + + +H++vi+++l+ l + p+ +l+ 
  CCD26223.1 223 DRLWVTYP-------RESRSELDERIHKVLIELFSKITDEQrlISITCHAHVINSILRNLNHPPILNLET 285
                 44444443.......59*******************9999999***************998877766655 PP

>> SprT-like  SprT-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.7e-06     0.015       9      83 ..     157     275 ..     154     279 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 1.7e-06
   SprT-like   9 ddavfggqaaggvkiiwskrlnttaGranlkr.................................................atvrhhasIeLsekllds 58 
                 +d+ ++g+++++v+++  ++l++t G+++ ++                                                  ++ h+  IeL +k+ d+
  CCD26223.1 157 NDTNNDGSTRKHVNVEILENLRETLGKYTCNErvdrsvllkeyqnfemgnnnsslclkldndypevdrlwvtypresrselDERIHKVLIELFSKITDE 255
                 566677888999****************99999***********************************************99999*************9 PP

   SprT-like  59 rsedrllntLaHElcHlalfvisgv 83 
                    +rl+++ +H  +H+++ ++++ 
  CCD26223.1 256 ---QRLISITCH--AHVINSILRNL 275
                 ...*********..89999999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       540  (0.0301188); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2292.29
//
Query:       CCD26224.1  [L=505]
Description: hypothetical protein NDAI_0H00500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.5e-62  209.2   0.0      1e-61  208.9   0.0    1.1  1  PALP      Pyridoxal-phosphate dependent enzyme
    2.2e-18   66.4   0.1      1e-09   38.7   0.1    2.8  2  CBS       CBS domain


Domain annotation for each model (and alignments):
>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.9   0.0   1.2e-65     1e-61       4     294 .]      14     316 ..      11     316 .. 0.91

  Alignments for each domain:
  == domain 1  score: 208.9 bits;  conditional E-value: 1.2e-65
                 CSSS--EEEECCTCCCCCCE..EEEEEGGGSTTSBTTHHHHHHHHHHHHTT....TTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-HHHHHH CS
        PALP   4 gigpTPlvrlprlskelgvp..lflKlEslnptgSfKdRgaeyllarlkeg....tgaktvveassGNhgralAaaaallGlkvtivvpadaspekval 96 
                  +g+TPlv+l++l k+lg++  +++KlE  np+gS+KdR a +++++++ +     +++t++e +sGN+g++lA++aa  G++ +i +p+++s+ekv  
  CCD26224.1  14 LVGNTPLVELKKLPKALGIKptIYAKLELYNPGGSIKDRIAKSMIEEAESTgkisPKTTTLIEPTSGNTGIGLALIAAIKGYRTIITLPEKMSNEKVSV 112
                 689********************************************8888899999****************************************** PP

                 HHHTT-EEEEECCH..HHHHHHH...HHHHHHHSTTCEE--TTTSHHHHHH.HHTHHHHHHHHTT.....TTEEEEEEE-SSSHHHHHHHHHHHHHSTT CS
        PALP  97 lrllGaevvevggd..ydeavaa...aaelaaegegaylvsqfdnptvieg.ygtiglEileqlg.....gkpdavvvpvGgGgliaGiaaglkerrpd 184
                 l++lGae+++++++  +d+ +++   a++l++e++ga++++q++n  + ++ y  +g Ei+eql+     ++++avv+++G+Gg+i+Gia+++ke++ +
  CCD26224.1 113 LKALGAEIIRTPTEaaWDSPESHigvAKRLEREIPGAVILDQYNNMKNPDAhYFGTGKEIMEQLKdvnrfQDLNAVVAGAGTGGTISGIAKFIKEQNEN 211
                 ***********55555888888777799************************************9999999999************************* PP

                 -EEEEEEECTTC.GGTTCCS..S.SS..B.SSS.CCSTCS.CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHH..HHHHH CS
        PALP 185 vrvigvepegsd.alarslragrrvtvpvsdtiadglavg.spselafelldrlvdeivtvsdeealeamrllarregivvepssaaalaal..klrea 279
                 ++++g++p+gs  al + l      +++v++  ++g++ +  p +l+ +l+    d  +   d+ a++ +r+l ++eg++v+ ss+ a+ al    ++ 
  CCD26224.1 212 IKIVGADPVGSIlALPNKL-----NETDVTSYKVEGIGYDfIPKVLDRSLV----DVWYKTEDKPAFKYARQLISNEGVLVGGSSGSAFTALveYCNDH 301
                 *********6651555666.....777777899999999955555555554....56677********************************9888889 PP

                 HCCTTCEEEEEEE-B CS
        PALP 280 gelkegdrvvviltg 294
                  el e+d++v+i+++
  CCD26224.1 302 PELTENDVIVLIFPD 316
                 9999999***99975 PP

>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.1   1.1e-13     1e-09       1      56 [.     367     422 ..     367     423 .. 0.94
   2 !   24.7   0.0   2.7e-09   2.4e-05       7      56 ..     459     505 .]     456     505 .] 0.87

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 1.1e-13
                 HHHHSBSSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   1 VgdimtrdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllrall 56 
                 V+d+  ++vv+v+++t ++++++++r++ ++++P + edgkl G+vtl+ ll++l+
  CCD26224.1 367 VRDLHLKPVVSVKETTKVADVIKILRDNSFDQVPALTEDGKLSGLVTLSQLLKKLS 422
                 789999*******************9999*****8779***************986 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 2.7e-09
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTT.BEEEEEEHHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVVdedg.klvGivtlrDllrall 56 
                 +++v +++d+ l+e+ + + ek+ s++ ++  +g  +v+ivt++Dll++l+
  CCD26224.1 459 KKFVKFTEDSKLSELNKFF-EKNSSAV-IT--NGlTPVHIVTKMDLLSYLA 505
                 6899***************.9996555.66..6767************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       653  (0.0364214); expected 358.6 (0.02)
Passed bias filter:                      469  (0.0261587); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3603.88
//
Query:       CCD26225.1  [L=731]
Description: hypothetical protein NDAI_0H00510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2574  (0.143566); expected 358.6 (0.02)
Passed bias filter:                      247  (0.0137766); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.48
# Mc/sec: 4563.84
//
Query:       CCD26226.1  [L=229]
Description: hypothetical protein NDAI_0H00520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-23   83.5   0.0    1.9e-23   82.8   0.0    1.4  1  DUF1279    Protein of unknown function (DUF1279)
  ------ inclusion threshold ------
      0.044   13.2   0.2      0.061   12.8   0.2    1.2  1  Golgin_A5  Golgin subfamily A member 5


Domain annotation for each model (and alignments):
>> DUF1279  Protein of unknown function (DUF1279)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   2.1e-27   1.9e-23       2      91 ..      49     162 ..      48     163 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.8 bits;  conditional E-value: 2.1e-27
     DUF1279   2 klKelfkkYGkvalgvylsislidlgicYllvks.gvd.veelleklklsvkv.....................sskkvekksks.swgefaiAYaihK 76 
                 ++K+l+ kYG++al++y+ + lidl++c+llv+s g+d +e + ek k   ++                     s ++ ++++ s  ++ef+iAY ihK
  CCD26226.1  49 GIKALMSKYGYTALFIYIGLTLIDLPLCFLLVHSlGKDkIEIYKEKAKKILGMkekpitddnevvldendkksgSLSRWDSFKRSpLLTEFLIAYGIHK 147
                 79*********************************************9998889**************99987655555566665689*********** PP

     DUF1279  77 ilipiRlpiTlaitp 91 
                 +li +Rlp+T+aitp
  CCD26226.1 148 SLIIVRLPLTAAITP 162
                 **************9 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   6.8e-06     0.061       6      29 ..      85     108 ..      81     133 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.8e-06
   Golgin_A5   6 kqeledYKqkAarILQsKeklias 29 
                 k  +e YK+kA++IL  Kek i +
  CCD26226.1  85 KDKIEIYKEKAKKILGMKEKPITD 108
                 678899**************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1737.04
//
Query:       CCD26227.1  [L=155]
Description: hypothetical protein NDAI_0H00530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.6e-30  103.1   0.2    6.6e-30  103.1   0.2    2.1  2  Ribosomal_L24e  Ribosomal protein L24e
  ------ inclusion threshold ------
        0.2   10.4   0.6       0.24   10.1   0.6    1.0  1  UNC-79          Cation-channel complex subunit UNC-79


Domain annotation for each model (and alignments):
>> Ribosomal_L24e  Ribosomal protein L24e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.2   7.4e-34   6.6e-30       1      66 []       1      66 [.       1      66 [. 0.99
   2 ?   -2.2   1.6      0.56     5e+03      56      65 ..     105     114 ..      97     131 .. 0.59

  Alignments for each domain:
  == domain 1  score: 103.1 bits;  conditional E-value: 7.4e-34
                    XXX-B-TTT-SB--SS--EEEE-TTS-EEEESSHHHHHHHHTT--GGGSTTSTTT-XXXXXXXX.. CS
  Ribosomal_L24e  1 mktekCsFsgykiyPGhGkrfvrnDgkvfrFlssKceklfkqkrnPrklkWTkayRrahkkeltee 66
                    mk+e+ sFsg+kiyPG+G++fvr D+k+frF +sK+++lfkq++nPr+++WT++yRr hkk++tee
      CCD26227.1  1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRVAWTVLYRRHHKKGITEE 66
                    9*************************************************************9986 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.56
                     -XXXXXXXX. CS
  Ribosomal_L24e  56 Rrahkkelte 65 
                     R+++kk+ +e
      CCD26227.1 105 REEKKKADKE 114
                     4444443332 PP

>> UNC-79  Cation-channel complex subunit UNC-79
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.6   2.6e-05      0.24     285     373 ..      44     126 ..      34     138 .. 0.73

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 2.6e-05
      UNC-79 285 nrPiRlCeqChskrhnerrgedhivhrslksvweldaelqtylveaivsLLkeakplteeaekeskekkklkqleekesekekeltlee 373
                 ++P R+      +rh+++ +++ + ++ +    +   + q+ +v a ++L+ke + l+ e++k s+e+kk+  +e+k+++k+  +   e
  CCD26227.1  44 KNPRRVAWTVLYRRHHKKGITEEVAKKRS----RKTVKAQRPIVGASLDLIKERRSLKPEVKKASREEKKKADKEKKKADKAARK--AE 126
                 56888888888888888866555555554....45556778899*************9999999999988888888876544333..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2261  (0.126109); expected 358.6 (0.02)
Passed bias filter:                      677  (0.0377601); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 1096.07
//
Query:       CCD26228.1  [L=417]
Description: hypothetical protein NDAI_0H00540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.2e-41  141.4  13.6    1.2e-41  141.4  13.6    2.7  3  DUF2838        Protein of unknown function (DUF2838)
  ------ inclusion threshold ------
        1.8    8.6   6.5       0.18   11.8   0.3    2.3  3  Bcr-Abl_Oligo  Bcr-Abl oncoprotein oligomerisation domain
        3.7    7.2   6.2          4    7.1   0.2    2.3  2  DUF4131        Domain of unknown function (DUF4131)


Domain annotation for each model (and alignments):
>> DUF2838  Protein of unknown function (DUF2838)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.4  13.6     2e-45   1.2e-41       1     111 []      97     207 ..      97     207 .. 0.99
   2 ?   -2.0   0.2      0.71   4.2e+03      26      45 ..     251     270 ..     238     282 .. 0.55
   3 ?   -7.3   9.7         3   1.8e+04      30      53 ..     315     338 ..     253     357 .. 0.65

  Alignments for each domain:
  == domain 1  score: 141.4 bits;  conditional E-value: 2e-45
     DUF2838   1 dklsFvlgvlnvlltafllgaapellplvylvlllvllplryityrkkklhyfllDfCYfvnilllllllvlpeseklfkavfalanGplalAiilwrn 99 
                 +k+++ ++++n+l ++f++g++pe+++++y++ l++l+p+r++ty+k + hy+l+D+CYfvn+l+ll+++ +pes++lf+++fa+++G+la+A+++wrn
  CCD26228.1  97 EKAFYPFTLFNILSIGFIMGKFPEWFHVYYTLVLFFLMPIRFYTYYKIQSHYYLADLCYFVNFLCLLFIWQFPESTSLFQSCFAFTFGSLAWAVLTWRN 195
                 6999*********************************************************************************************** PP

     DUF2838 100 slvfhsldkvtS 111
                 slv+hs+dk+tS
  CCD26228.1 196 SLVIHSIDKTTS 207
                 ***********8 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.71
     DUF2838  26 lplvylvlllvllplryity 45 
                 +++ +  l+  +l++ +it+
  CCD26228.1 251 IWTSFYYLIWQILYHYFITF 270
                 34333333333344444443 PP

  == domain 3  score: -7.3 bits;  conditional E-value: 3
     DUF2838  30 ylvlllvllplryityrkkklhyf 53 
                 y  +l+++l  ++ + +kk   +f
  CCD26228.1 315 YFYQLFTMLLCSIWIRYKKLALFF 338
                 222233222222222222222233 PP

>> Bcr-Abl_Oligo  Bcr-Abl oncoprotein oligomerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2      0.26   1.5e+03      22      49 ..      60      87 ..      45      92 .. 0.70
   2 ?   -3.6   0.1       1.9   1.2e+04       4      15 ..     292     303 ..     291     307 .. 0.82
   3 ?   11.8   0.3   3.1e-05      0.18      29      64 ..     362     397 ..     359     401 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.26
  Bcr-Abl_Oligo 22 eLdsvedieqeLerCkaslrrLekelne 49
                   eL s e +e+   +  + +++L+k l  
     CCD26228.1 60 ELTSKEKVEEWKLKVLERIKHLDKTLDS 87
                   6777777777767777788888888765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1.9
  Bcr-Abl_Oligo   4 eferaWraefPe 15 
                    +f++ W a+ P 
     CCD26228.1 292 QFKDFWAAKLPS 303
                    69999**99995 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 3.1e-05
  Bcr-Abl_Oligo  29 ieqeLerCkaslrrLekelneekfkviyLqtllake 64 
                     ++e+++ k +l  L++eln    ++ yL   l ke
     CCD26228.1 362 FKKEVDKLKIELELLQQELNDKNIQINYLNIELDKE 397
                    689***************************999988 PP

>> DUF4131  Domain of unknown function (DUF4131)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.8     0.024   1.5e+02      17      54 ..     159     195 ..     145     210 .. 0.64
   2 ?    7.1   0.2   0.00067         4      13      50 ..     319     353 ..     310     378 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.024
     DUF4131  17 llllllllrrrprrrvllllllllllallgfalrapqp 54 
                 +l+ll++++  p  + l+  ++++ +++l +a+ ++++
  CCD26228.1 159 FLCLLFIWQ-FPESTSLFQSCFAFTFGSLAWAVLTWRN 195
                 455555553.5666666666666666666555555544 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00067
     DUF4131  13 llllllllllllrrrprrrvllllllllllallgfalr 50 
                 l+ +ll+ +++   r+++  l++l+ ++l+a++  a +
  CCD26228.1 319 LFTMLLCSIWI---RYKKLALFFLMSIFLIAAHNGATY 353
                 56678888888...9***************99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1533  (0.0855039); expected 358.6 (0.02)
Passed bias filter:                      620  (0.0345808); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 2818.21
//
Query:       CCD26229.1  [L=850]
Description: hypothetical protein NDAI_0H00550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-12   47.5   0.4    6.5e-07   29.5   0.0    3.0  2  PPR_2     PPR repeat family
    1.7e-11   44.0   0.4    6.7e-07   29.3   0.1    3.0  2  PPR_3     Pentatricopeptide repeat domain
    2.6e-05   24.1   0.7       0.26   11.6   0.0    3.8  3  PPR       PPR repeat
  ------ inclusion threshold ------
      0.019   14.4   0.0       0.06   12.7   0.0    1.8  1  PPR_long  Pentacotripeptide-repeat region of PRORP
      0.031   14.0   0.0        6.8    6.5   0.0    2.7  2  PPR_1     PPR repeat


Domain annotation for each model (and alignments):
>> PPR_2  PPR repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   5.9e-06     0.021       1      31 [.     322     352 ..     322     358 .. 0.94
   2 !   29.5   0.0   1.8e-10   6.5e-07       1      46 [.     359     404 ..     359     407 .. 0.96

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 5.9e-06
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkk 31 
                 p+ v y+++I+ + + + +++A+++f  Mk 
  CCD26229.1 322 PNKVNYTSIIQFYTQMNIPKKAWEIFATMKF 352
                 899**************************97 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 1.8e-10
       PPR_2   1 pdvvtyNtlIsglckkgkveeAfklfneMkkrglePnsyTysilik 46 
                 pd++tyN ++  ++ +++++ A++lf+e  + +++P++ T + li+
  CCD26229.1 359 PDIITYNKMLEVCLLEKDYSRALDLFHELTQAKITPTVTTLTKLIQ 404
                 8*****************************************9997 PP

>> PPR_3  Pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   6.4e-05      0.23       8      42 ..     317     351 ..     311     354 .. 0.94
   2 !   29.3   0.1   1.9e-10   6.7e-07      12      59 ..     358     405 ..     353     411 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 6.4e-05
       PPR_3   8 rkgikldvvtYthLLtayanagnkklalevlermk 42 
                 + gi ++ v Yt++++ y +    k a e+++ mk
  CCD26229.1 317 DYGIYPNKVNYTSIIQFYTQMNIPKKAWEIFATMK 351
                 679*******************************9 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 1.9e-10
       PPR_3  12 kldvvtYthLLtayanagnkklalevlermkkkgikPtvvtyNailgv 59 
                  +d++tY+ +L+++ + +++ +al  + ++ + +i+Ptv t   ++++
  CCD26229.1 358 SPDIITYNKMLEVCLLEKDYSRALDLFHELTQAKITPTVTTLTKLIQI 405
                 58**************************************99888875 PP

>> PPR  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0013       4.6       2      27 ..     326     351 ..     325     353 .. 0.94
   2 !   11.6   0.0   7.2e-05      0.26       1      28 [.     362     389 ..     362     392 .. 0.92
   3 ?    0.0   0.1      0.37   1.3e+03       6      22 ..     778     794 ..     776     799 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0013
         PPR   2 tynslIsgycknGkleeAlelfkeMk 27 
                  y+s+I+ y + + +++A e+f  Mk
  CCD26229.1 326 NYTSIIQFYTQMNIPKKAWEIFATMK 351
                 5*********************9997 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 7.2e-05
         PPR   1 vtynslIsgycknGkleeAlelfkeMke 28 
                 +tyn ++ ++  + +++ Al+lf+e+ +
  CCD26229.1 362 ITYNKMLEVCLLEKDYSRALDLFHELTQ 389
                 69***********************865 PP

  == domain 3  score: 0.0 bits;  conditional E-value: 0.37
         PPR   6 lIsgycknGkleeAlel 22 
                 +I+ y++  ++ +A+ +
  CCD26229.1 778 MIDFYVSQKMYIDAIGI 794
                 9*************987 PP

>> PPR_long  Pentacotripeptide-repeat region of PRORP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   1.7e-05      0.06      83     171 ..     317     407 ..     278     415 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
                 HTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHH..HH-S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHCT----HHHHHHHHHHHH CS
    PPR_long  83 akgvspnEatvtalarlaaakedgdlafelvkeme..kagvsPrLRsyaPaLaayckagdadkaleveehlkasgveleEaelaaLLkvsa 171
                   g+ pn   +t++++  ++ +   +a e+ ++m+  +++ sP + +y+ +L      +d  +al   + l++++++++ + l+ L+++ a
  CCD26229.1 317 DYGIYPNKVNYTSIIQFYTQMNIPKKAWEIFATMKflSKEHSPDIITYNKMLEVCLLEKDYSRALDLFHELTQAKITPTVTTLTKLIQIMA 407
                 4688999999999999999999999999999999876778999999999999999999999999999999999999999999999988866 PP

>> PPR_1  PPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0019       6.8       2      34 .]     319     351 ..     318     351 .. 0.90
   2 ?    4.7   0.0    0.0069        25       2      12 ..     356     366 ..     355     387 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0019
                 S----HHHHHHHHHHHHHTS-HHHHHHHHHHHH CS
       PPR_1   2 GlkPdvvTYNtLIdGlCkaGrvdeAfelfdeMe 34 
                 G+ P+ v Y+++I  + + +  ++A e+f  M+
  CCD26229.1 319 GIYPNKVNYTSIIQFYTQMNIPKKAWEIFATMK 351
                 899***********9999999999999998885 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0069
                 S----HHHHHH CS
       PPR_1   2 GlkPdvvTYNt 12 
                  ++Pd++TYN 
  CCD26229.1 356 EHSPDIITYNK 366
                 689*******5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1036  (0.0577835); expected 358.6 (0.02)
Passed bias filter:                      534  (0.0297841); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.24s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 6075.39
//
Query:       CCD26230.1  [L=125]
Description: hypothetical protein NDAI_0H00560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      2e-33  115.0  34.9    2.3e-33  114.8  34.9    1.0  1  Cgr1        Cgr1 family
  ------ inclusion threshold ------
      0.044   12.9   4.5       0.05   12.7   4.5    1.1  1  DUF2048     Abhydrolase domain containing 18
        4.3    7.4  16.4        5.5    7.0  16.4    1.1  1  UPF0242     Uncharacterised protein family (UPF0242) N-termin


Domain annotation for each model (and alignments):
>> Cgr1  Cgr1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.8  34.9   3.9e-37   2.3e-33       2     108 .]      18     124 ..      17     124 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.8 bits;  conditional E-value: 3.9e-37
        Cgr1   2 kgkrvsGksWkteKkafrsksskkkkkkkkswekrqekrkkakaiKklekeLkdekeaerqrrieaikerrkakeEkeRleelaakmhakkveRlkrre 100
                 kg  vsG+sWk +K++fr ks+ +k+kk +swe +++kr ++k++K++ k+Lkdeke+er+++iea+kerr++++EkeR+e+laakmhakkveR++rre
  CCD26230.1  18 KGLTVSGRSWKVSKQPFRAKSRVVKNKKLTSWEIKEQKRLEDKQFKERMKALKDEKEEERKNKIEALKERREKQAEKERYERLAAKMHAKKVERMRRRE 116
                 7889******************8877************************************************************************* PP

        Cgr1 101 kRnkklke 108
                 kRnk+lke
  CCD26230.1 117 KRNKALKE 124
                 ******96 PP

>> DUF2048  Abhydrolase domain containing 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   4.5   8.4e-06      0.05     223     276 ..      45     100 ..      25     116 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.4e-06
     DUF2048 223 ksiawdvLekq.ledgnyrerlstasdaaaeekaakldeakerkae.kealrfmrl 276
                 k ++w++ e++ led++++er++  +d+ +ee+++k+++ ker+ +  e+ r  rl
  CCD26230.1  45 KLTSWEIKEQKrLEDKQFKERMKALKDEKEEERKNKIEALKERREKqAEKERYERL 100
                 5689**999999************99999999999988877776552333333332 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0  16.4   0.00093       5.5      54     124 ..      46     124 ..      40     125 .] 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00093
     UPF0242  54 llkwekalkeklekskleekeaklteld.eglktkeealeelqeeeeeLkee.......ldakeeelerlkeenqqLqe 124
                 l+ we +++++le ++++e+ + l++++ e+ k+k eal+e++e++ e ++         ++k e ++r++++n+ L+e
  CCD26230.1  46 LTSWEIKEQKRLEDKQFKERMKALKDEKeEERKNKIEALKERREKQAEKERYerlaakmHAKKVERMRRREKRNKALKE 124
                 678*********988888888877765538899999******9999887776788888777778899999*****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3749  (0.209103); expected 358.6 (0.02)
Passed bias filter:                      779  (0.0434492); expected 358.6 (0.02)
Passed Vit filter:                       124  (0.00691617); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.27s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 896.12
//
Query:       CCD26231.1  [L=903]
Description: hypothetical protein NDAI_0H00570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.2e-146  490.5  17.7   2.3e-146  489.6  17.7    1.5  1  Rrn6        RNA polymerase I-specific transcription-initiatio


Domain annotation for each model (and alignments):
>> Rrn6  RNA polymerase I-specific transcription-initiation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.6  17.7  1.3e-150  2.3e-146       1     851 []     182     902 ..     182     902 .. 0.90

  Alignments for each domain:
  == domain 1  score: 489.6 bits;  conditional E-value: 1.3e-150
        Rrn6   1 DPtvgsLlaigeiqdvsddrsksr.vpilAyasGesgsiLrLarleeekwewgedksvtlrvptidesesgewisdgapIkqIkfaqsserfeekstwl 98 
                 DP vg+L+++g iq+ +d r++ + ++i++y++G+++s+L ++r+ ++++++   +                 i++++pIk Ik+ ++s+++ + s+++
  CCD26231.1 182 DPIVGDLIDVGIIQTLNDIRKGVDgTEIIVYVCGNTSSTLCISRY-TDDSSYLLPT----------------YINLQSPIKNIKIGRLSKNMLRASDCI 263
                 9********************************************.6777777775................79************************* PP

        Rrn6  99 aVrtetsttifrplyhrvpvperspessidskspsridanplleisssetggfphaDvaFNPwdqrqfAivDekGnWsvwdisg..rkrknksklsasl 195
                 +++te+s+++++              ++ ++ + s++++ ++++++++e+++f++aD+aFNPwd ++fA+vD+kGnW +++i++  ++     kl +++
  CCD26231.1 264 GILTENSFYVLKL-------------HQLHDPE-SNLSYILYGPLTFNEFNDFTFADFAFNPWDIEEFALVDIKGNWIIGSIPKlnKHAA-TGKLFLKR 347
                 *************.............9999999.*************************************************9954444.459***** PP

        Rrn6 196 rksgsifdpeledlsseteldgwkrIlWvsdvntLlVcnrrklvlvdikgnsqeelvlaltlsrssewILDvkrspvnpshvfvLTsteliwldvtsss 294
                 ++sg+ifd e        e++ wk+I+W+ +++++l+ nr+++v+vd ++n+q ++++a+t+s    +++D+kr  v++  +++LTs+e+i++++    
  CCD26231.1 348 HFSGTIFDIE--------EQSRWKKIEWSLSSSRILILNRSQMVEVDYRENWQLQIIEAKTWS----RLRDYKR--VDDTISVLLTSREIIIIST---- 428
                 **********........*********************************************....*******..******************6.... PP

        Rrn6 295 easasdeqaeltrllSwkHfrdpeDttLrltvlevgkgs.edllvliySrlnnlvlvfrfsisssessaqssgsDPfildlpqdseteeassgissiqv 392
                     +d++ +l+r+lSwkH++dp+D t+r+ +++ ++ + + + ++i+S+++n+v+v+ fsi+s+++  qs  + + +l++p+       ++gi+si++
  CCD26231.1 429 ----KDNDGDLKRELSWKHDLDPSDCTIRMFIQRRREPTvNLFSMFITSKRHNKVYVHVFSIDSDDKILQSYDE-SKLLNIPG------LENGIDSIAF 516
                 ....66778**************************************************************999.********......********98 PP

        Rrn6 393 lpaflfrseedssglgrdyseegvkffqlfvldsdlslheslys.......sstepsrelrspakelrlkdlskssikrkkkekrkktasrkeddfvvp 484
                 +         +++++g+ ++  + ++ +++  ++dl++   l++       + ++ s+++   a+ +++ d+++++  +  +e+ +k + +k  +++v+
  CCD26231.1 517 E------YLGQDTYEGNATEPVQREYKMFIRNNDDLKVLVFLVNssvlpdqEQEHISDSDLKLAEGSTVPDTYSDNLLSLFTELDNKLNDDKVPAYAVE 609
                 8......8899*********************************6655555555555555555555555666666666666666666555555555555 PP

        Rrn6 485 dglelkvrkeksaklkrsssaslapeqrtldfervysassteeaeeqsfqdllyrlseaiqqlllegsesersplk......tlleladlplsvedvde 577
                 ++                                            + fq+++yrls++++q+l++  + +r+++       ++++l+d+p  ++d++e
  CCD26231.1 610 EE-------------------------------------------GDIFQEYGYRLSDKMNQYLENAFAVTRESVLpfdlclKVEDLTDVPGYIHDFSE 665
                 55...........................................559************************99999********************** PP

        Rrn6 578 faseleqllsfyeekditfsslktilklllselvsrslddiydkllelW.lsplprdipsrvrlakerlirevaaelllSsirvsklraeasslsssls 675
                 f+s+l+q++++y+++d+tf+++k i++lll e+++ +ld +y+kll++W l++      +++       ++ev + ++++s+r+sk             
  CCD26231.1 666 FESLLDQFFQYYNDQDVTFTDIKGIFQLLLGENIA-NLDLVYNKLLQCWvLASE----DAKYL------TKEVLKNVIWASLRFSK------------- 740
                 ***********************************.*************85555....36666......*****************............. PP

        Rrn6 676 sssssssssssssssedpelsredpldalsrytklikssptslsrsvsniLshWelg...sdpaeydwqrtesaleaeeq..............rqrar 757
                                             +s+y++++++++++l++s+++++++W++    ++++e++++r++  l++++q              +q ++
  CCD26231.1 741 ----------------------------RSNYDTYETEIYRTLDDSYRSVIDSWDNLsdlENEHEVNSSRSTLPLHSQPQfsfnsqsqiptiksSQTRS 811
                 ............................9**************************8779*****************99999999999999999877777 PP

        Rrn6 758 rkrekrrrrkeklklasraeasssssssqssssksssssssqlpsssqvptlpd.....fslsmqissSQvvsss....mSQperGrFgsRpakkKKKR 847
                 ++++ r+++++  k +s++  s s++ +q+s+        s+ ++ s ++tlpd     f+l mq+ s     ss     SQ+++ +++++   kKKK+
  CCD26231.1 812 QRSSIRPKSNRVNKTKSSNGFSASQDPRQFSQ-------MSSQLTNSISSTLPDtmtpaFTL-MQPVSTLSAGSSgtpiGSQSRS-SQRGK---KKKKK 898
                 77777888888877777777777777777766.......78888888888888899976666.5554444444448********9.45777...9**** PP

        Rrn6 848 kaGF 851
                 ++GF
  CCD26231.1 899 VGGF 902
                 ***9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (903 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       702  (0.0391544); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.30s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 6277.88
//
Query:       CCD26232.1  [L=709]
Description: hypothetical protein NDAI_0H00580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-98  328.9   0.6    1.9e-98  328.4   0.6    1.2  1  Trp_syntA  Tryptophan synthase alpha chain
      5e-49  167.3   2.5    6.6e-49  166.9   0.9    1.9  2  PALP       Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
      0.035   13.5   1.0      0.063   12.7   0.1    1.9  2  BtpA       BtpA family
      0.053   13.0   0.1        1.1    8.6   0.0    2.3  2  PcrB       PcrB family


Domain annotation for each model (and alignments):
>> Trp_syntA  Tryptophan synthase alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.4   0.6  4.3e-102   1.9e-98       1     250 [.       9     259 ..       9     269 .. 0.98

  Alignments for each domain:
  == domain 1  score: 328.4 bits;  conditional E-value: 4.3e-102
                 HHHHHCTTB-EEEEEEETTSS-HHHHHHHHHHHHHCT-SSEEEE---S--TTS-HHHHHHHHCCCCTT--HHHHHHHHHHHHHHCSSS-EEEEE-CHHH CS
   Trp_syntA   1 faklkaenraafvpyvtagdpdleqsleilkalekagadviElGlpfsdPladGPvIqaanlraLakgvtlekvlelveevrkkevevPivlltylnlv 99 
                 fa++k enr+++v+++tag+p+++ ++ ilk+++++g+dv+E+GlpfsdP+adGP+Iq an++aL++gvt+ek+lelv+++r+++ ++Pi+l++y+n++
  CCD26232.1   9 FAQAKLENRNTLVTFMTAGYPTVDATIPILKGFQDGGVDVVEIGLPFSDPIADGPTIQVANTVALDNGVTMEKTLELVRKARAEGFTLPIILMGYYNPI 107
                 8999*********************************************************************************************** PP

                 CCC-HHHHCHHHHHCTEEEEEETTSBCCCHHHHHHHHHHTT-EEEEEE-TTS-HHHHHHHHHH--S-EEEESTTC-SSTTSSB-TTHHHHHHHHHHCT. CS
   Trp_syntA 100 lsygeerflaelkeagvdglivpDlPleeaeelveaakkkglelvflvapttsderlkevveqaegfvYvvsraGvTgaenavaaevdelverlkklt. 197
                 l+ygee+f++++++ag++g+i++DlP+eea ++++++ + gl+lv+lvap+t+d+rl+ +++ a++fvYvvsr+G+Tga+++va+++d+lv+r++k+t 
  CCD26232.1 108 LNYGEEKFIKDAADAGANGFIIVDLPPEEAVKVRNFVASVGLSLVPLVAPSTTDDRLELLAKLADSFVYVVSRMGTTGAQTSVASNLDQLVNRVRKYTk 206
                 **************************************************************************************************9 PP

                 SS-EEEESSS-SHHHHHHHHTT-SEEEE-HHHHHHHHCTTTSHHHHHHHHHHH CS
   Trp_syntA 198 avPvavGFGistkeqvkqvakvadGvivGSalvkkieeeaeekeqalekleel 250
                 ++P+avGFG++t+e++k+v ++adGv++GS +v  +++++++++++++k+++ 
  CCD26232.1 207 DTPLAVGFGVATREHFKAVGSMADGVVIGSRIVSLCAQAKDGEHYNVAKNYVE 259
                 9*******************************************999998765 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.21   9.4e+02     149     182 ..     165     198 ..     163     261 .. 0.63
   2 !  166.9   0.9   1.5e-52   6.6e-49       4     294 .]     349     675 ..     346     675 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.21
                 HHHHHTTTTEEEEEEE-SSSHHHHHHHHHHHHHS CS
        PALP 149 EileqlggkpdavvvpvGgGgliaGiaaglkerr 182
                 E+l++l +++ +vv  +G+ g  + +a  l +  
  CCD26232.1 165 ELLAKLADSFVYVVSRMGTTGAQTSVASNLDQLV 198
                 6666777777777777777777777766665533 PP

  == domain 2  score: 166.9 bits;  conditional E-value: 1.5e-52
                 CSSS--EEEECCTCCCCCCE.EEEEEGGGSTTSBTTHHHHHHHHHHHHTTTTTSEEEEEBSSHHHHHHHHHHHHHT-EEEEEEETTS-...HHHHHHHH CS
        PALP   4 gigpTPlvrlprlskelgvp.lflKlEslnptgSfKdRgaeyllarlkegtgaktvveassGNhgralAaaaallGlkvtivvpadas...pekvallr 98 
                   +p+ l+r++rl++++g++ ++lK+E+ln+tgS+K++ a   ++ +k+  +  +++e+++G+hg+a+A a+a++Glk+t+++ a +    + +v ++r
  CCD26232.1 349 IGRPSSLHRAERLTQHCGGAqIWLKREDLNHTGSHKINNALAQVLIAKRLGKSNVIAETGAGQHGVATATACAKFGLKCTVFMGAEDVrrqALNVFRMR 447
                 568999****************************************999978888888888**************************97767******* PP

                 HTT-EEEEECCHHHHHHHHHHHHHHH.....STTCEE--TTT....SHHHHHH.HHTHHHHHHHHTT.....TTEEEEEEE-SSSHHHHHHHHHHHHHS CS
        PALP  99 llGaevvevggdydeavaaaaelaae.....gegaylvsqfd....nptvieg.ygtiglEileqlg.....gkpdavvvpvGgGgliaGiaaglkerr 182
                  lGaevv v +++++ ++a  e+ ++     ++ +y+v +       pt +   ++ ig+E +eq+      + pdavv++vGgG++ +G+  ++ ++ 
  CCD26232.1 448 ILGAEVVSVTNGTQTLRDATSEAFRNwvtnlSTTYYVVGSAIgphpYPTLVRTfQSVIGQETKEQFAalnngKLPDAVVACVGGGSNSTGMFSPFEHDL 546
                 *********888888877777777777777766666665555674446688888*********9999999*9************************865 PP

                 TT-EEEEEEEC..TTCGGTTCC..S..S.SS..B................SSS.CCSTCS..CGTTCCHHHHSEEEEEEEEEEHHHHHHHHHHHHHHHS CS
        PALP 183 pdvrvigvepe..gsdalarsl..ragrrvtvpvs...............dtiadglavg..spselafelldrlvdeivtvsdeealeamrllarreg 260
                 + v+++gve+   g d+ ++s+   agr+   +                 ++   gl+ +   p+   +++      ++++ +d+eale+ +ll + eg
  CCD26232.1 547 S-VKLFGVEAGgdGLDTDHHSAtlTAGRPGVFHGVktyvlqdndgqvhdtHSVSAGLDYPgvGPELAFWKA--TGRAQFMAATDAEALEGFKLLSQLEG 642
                 5.9*****999885555555544477777666666899999999999988888888888863333333333..345579******************** PP

                 B-B-H.HHHHHHHHHHHHHHHCCTTCEEEEEEE-B CS
        PALP 261 ivvep.ssaaalaalklreagelkegdrvvviltg 294
                 i++   ss+a++ a+  + a+ +k++++ ++ ++g
  CCD26232.1 643 IIPALeSSHAVYGAC--QLAKTMKPEEHLIINISG 675
                 *****5555555555..999999999888888876 PP

>> BtpA  BtpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.1   1.4e-05     0.063     179     250 ..     184     263 ..     164     267 .. 0.72
   2 ?   -2.8   0.1      0.77   3.5e+03     189     217 ..     389     417 ..     380     423 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.4e-05
        BtpA 179 sGkatGgevdleelk.laketvk.vkvlvgsGvse.enlekllsiadGvivgtsi......kkdGkianaiDkervrkive 250
                 +G +t  + +l++l+ ++++  k ++  vg Gv + e  + + s+adGv++g+ i       kdG+  n + k+ v++i++
  CCD26232.1 184 TGAQTSVASNLDQLVnRVRKYTKdTPLAVGFGVATrEHFKAVGSMADGVVIGSRIvslcaqAKDGEHYN-VAKNYVEEILN 263
                 789999999999876256666667********97626778888**********9833333235555333.45555555555 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.77
        BtpA 189 leelklaketvkvkvlvgsGvseenlekl 217
                 l+++  ak++ k +v++ +G+ ++ ++  
  CCD26232.1 389 LAQVLIAKRLGKSNVIAETGAGQHGVATA 417
                 56788899999999999999998887765 PP

>> PcrB  PcrB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.037   1.7e+02      40      81 ..      75     117 ..      64     151 .. 0.68
   2 ?    8.6   0.0   0.00025       1.1     166     211 ..     192     238 ..     179     247 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.037
                 TCHHHHHHHHHHHHHCT..SSS-EEEEESSGGG--TTSSEEEEE CS
        PcrB  40 qsvtldntvrllkkvsr..iklPivlepsnvegvvryaDalFvm 81 
                 ++vt+++t++l++k +   ++lPi+l  +  + + +y +  F+ 
  CCD26232.1  75 NGVTMEKTLELVRKARAegFTLPIILM-GYYNPILNYGEEKFIK 117
                 4799*********99754489***996.5555566665555555 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.00025
                 S-H.HHHHHHHHHHSSSEEEEESS--SHHHHHHHHCCSSEEEE-CHH CS
        PcrB 166 edv.eevialkkklekarlivGGGirsaEkAkevveaADvivvGnvv 211
                  ++ ++v +++k  +++ l vG G+  +E+ k v  +AD +v+G  +
  CCD26232.1 192 SNLdQLVNRVRKYTKDTPLAVGFGVATREHFKAVGSMADGVVIGSRI 238
                 445477889999999*****************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       489  (0.0272742); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5027.35
//
Query:       CCD26233.1  [L=387]
Description: hypothetical protein NDAI_0H00590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   4.9e-190  631.2  11.4   5.6e-190  631.0  11.4    1.0  1  Ribosomal_L3  Ribosomal protein L3


Domain annotation for each model (and alignments):
>> Ribosomal_L3  Ribosomal protein L3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  631.0  11.4  3.1e-194  5.6e-190       1     369 []       1     366 [.       1     366 [. 1.00

  Alignments for each domain:
  == domain 1  score: 631.0 bits;  conditional E-value: 3.1e-194
                   XX.S.SXXXXSSXCCCTTXSBXSXSSXXXSX.XXSBTTTTTXBSEEEEEEEEEEEEEEECHHTTSCCCCCEEEEEEEEEEC--EEEEEEEEEEEETT CS
  Ribosomal_L3   1 mshrkfeaprhgslGflprkRaerergkvksfPkddtskpvkltaflGyKaGmthiVrevdkpgskldkkevveavtvvetppmvivgvvgyvetpr 97 
                   mshrkfe+prhg+lGflprkRa + rg+vksfPkdd+skpv+lt+flGyKaGmt+iVr++d+pgsk++k+e+veav+vv+tp++v+vgvvgyvetpr
    CCD26233.1   1 MSHRKFEQPRHGHLGFLPRKRAVSIRGRVKSFPKDDQSKPVALTSFLGYKAGMTTIVRDLDRPGSKFHKREIVEAVSVVDTPALVVVGVVGYVETPR 97 
                   9************************************************************************************************ PP

                   EEEEEEEEESSS.SHHHHCCCSTSTTTSSSSSSHCCCCHCSSCCCCCCHHHHHHHHHHSCSCEEEEEEEECCCSS-SCCSSHHEEEEECHCSCHHHH CS
  Ribosomal_L3  98 GlrslktvwaehlseevkrrlyknwykskkkaftkyskkyeskdvkklieadleeikkeasvvrviahtvirktkslaqKkahllEiqvngGtiaek 194
                   Glrsl+tvwaehls+evkrr+yknwykskkkaftkys+ky  +++ + ie++l++i+k+asvvrv++ht+irkt+ laqKkahl Eiq+ngG+iaek
    CCD26233.1  98 GLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKY--AQDGAEIERELARISKYASVVRVLVHTQIRKTP-LAQKKAHLAEIQLNGGSIAEK 191
                   ****************************************..99999****************************.********************* PP

                   HHHHHHCCTCEEECCCCS-TTSEEEEEEEE---EEE-HHHHCT----STTTSSSSSS-S-SS-SSSSS--TTS--SEEESCCEEEEEEEEEEEEETT CS
  Ribosomal_L3 195 ldfarealektvavaavFrqgeliDvigvtkGkGfeGvvkRWgvkklprkthrglRkvaaigawdparVsstvaraGqkGyhhRtelnkkiyrigkg 291
                   +++are++ektv v++vF+q+e+iDv++vtkG+GfeGv++RWg+kklprkthrglRkva+igaw+pa+V++tvaraGq+GyhhRt++n+k+yr+gkg
    CCD26233.1 192 VQWAREHFEKTVSVDSVFEQNEMIDVVAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQRGYHHRTSINHKVYRVGKG 288
                   ************************************************************************************************* PP

                   TSSTTTSSTTT.SS..SS.TTTCTTCB..TSCEEEEES--SSSTTEEEEEEE-SSGGGSCCCSS-EEEEEE-TTCTSS CS
  Ribosomal_L3 292 edaknastefdltekeitPmGGfvhyGevkndfilvkGsvpGpkkrlvklrkslltqtsrkaeeevslkfidtaskfg 369
                   ed+ n+st+fd+t+k+itPmGGfv yGevkndf++vkGs+pG++kr+v+lrksl+t+tsrka eevslk+idtaskfg
    CCD26233.1 289 EDESNGSTSFDRTKKTITPMGGFVSYGEVKNDFVMVKGSIPGTRKRVVTLRKSLYTNTSRKAVEEVSLKWIDTASKFG 366
                   ****************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2869.53
//
Query:       CCD26234.1  [L=398]
Description: hypothetical protein NDAI_0H00600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2622  (0.146244); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.28s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 2722.74
//
Query:       CCD26235.1  [L=369]
Description: hypothetical protein NDAI_0H00610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.1e-55  185.8   0.2    2.3e-54  184.5   0.2    1.6  1  Pkinase         Protein kinase domain
    4.6e-17   62.2   0.0    6.4e-17   61.7   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    4.2e-07   30.2   0.0    1.9e-06   28.0   0.0    1.8  2  APH             Phosphotransferase enzyme family
     0.0087   15.7   0.1      0.019   14.6   0.1    1.7  1  Choline_kinase  Choline/ethanolamine kinase
  ------ inclusion threshold ------
       0.03   13.1   0.0       0.05   12.4   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
        0.1   12.0   0.0       0.21   10.9   0.0    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.5   0.2   7.7e-58   2.3e-54       1     264 []      51     350 ..      51     350 .. 0.85

  Alignments for each domain:
  == domain 1  score: 184.5 bits;  conditional E-value: 7.7e-58
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..........HHHHHHHHHHHHHS.CTTB--EEEEEEESSEEE..EEEE--TTEBHH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..........kkvlrEikilkklk.hpnivrlyevfeekdely..lvleyveggela 86 
                 ye ++k+G+G++++V+++    + +     + +++++k++            kk+ rE+kil +l   pn++ l+++++++++ +  l++e v++ ++ 
  CCD26235.1  51 YEIINKIGRGKYSEVFSGECIINPEDHHHHQQQQQHEKQQPCvikvlkpvkmKKIYRELKILMNLTgGPNVISLLDIVQDQSSKIpaLIFEEVKNMDFR 149
                 788999*********97543222222222222222222222233455566667799**********9*************8877667************ PP

                 HHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHH CS
     Pkinase  87 dllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWsl 183
                 +l+    +++  +++ +++q+l +l+y+Hs+gi+HrD+Kp+N++id ++++l+++D+Gla+ ++ + +++ +v++++   PE+l + n+y+ + D+Ws+
  CCD26235.1 150 QLYP---TFKLPDLQYYFTQLLIALNYCHSMGIMHRDVKPQNVMIDpKEKKLRLIDWGLAEFYHPGVDYNVRVASRYHKGPELLvNLNQYDYSLDLWSV 245
                 ***8...6**************************************88888*********************************888************ PP

                 HHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS..............................-HHHHHHHHHHT-SSGCCS CS
     Pkinase 184 Gvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeasei..............................seeakdllkkllkkdpkkR 252
                 G++l+ ++++++pf   kg    ++++dql+ki+ +lg++++ +  ++                                 +e++dl+++ll++d+++R
  CCD26235.1 246 GCMLAAIVFKREPFF--KG----SSNADQLVKIAAVLGTKELLSYLNKYGlrlpseydnimrdfirrpwdhftgsytnlaVPEMIDLIDNLLRYDHQER 338
                 ***************..33....458899999999999755544444444688888899**************************************** PP

                 TTHHHHHTSGGG CS
     Pkinase 253 ltaeellqhpyl 264
                 lta+e+++hp++
  CCD26235.1 339 LTAQEAMDHPFF 350
                 ***********8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.0   2.2e-20   6.4e-17       3     213 ..      53     267 ..      51     309 .. 0.84

  Alignments for each domain:
  == domain 1  score: 61.7 bits;  conditional E-value: 2.2e-20
                  EEEEEEEESSEEEEEEEEET...........TTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS.-BTTB--EEEEEE..SSSS..EEEEEE--T CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg...........ekekkevkVavKtlkeeateeekeelleeakimkkl.khpnivkllgvct..keep..llivteyvk 84 
                  + +k+G+G++++V++g++             ++++k++ +++K+lk  ++++    +++e+ki+++l   pn+++ll ++   +  +    +++e vk
   CCD26235.1  53 IINKIGRGKYSEVFSGECIInpedhhhhqqqQQHEKQQPCVIKVLKPVKMKK----IYRELKILMNLtGGPNVISLLDIVQdqS--SkiPALIFEEVK 144
                  6799************99888899999998777888999******8877766....***********99************533..33489******* PP

                  TEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEE.ETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE CS
  Pkinase_Tyr  85 gGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLls.enkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk 181
                  + d+++       ++++l dl  + +q+  +++y +s+ ++Hrd+  +Nv+++ ++k+ ++ D GLa+  +   +y+++  ++       pE l + +
   CCD26235.1 145 NMDFRQLY-----PTFKLPDLQYYFTQLLIALNYCHSMGIMHRDVKPQNVMIDpKEKKLRLIDWGLAEFYHPGVDYNVRVASRY---HKGPELLVNLN 234
                  99987754.....558************************************944679**********9966666655444333...358**987754 PP

                  .EEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHH CS
  Pkinase_Tyr 182 .ftsksDvWsfGvllwEiftlgespypglknee 213
                   +  + D Ws G +l  i+ + e  ++g +n++
   CCD26235.1 235 qYDYSLDLWSVGCMLAAIVFKREPFFKGSSNAD 267
                  399999*********999886666666666655 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.44   1.3e+03      19      78 ..      87     144 ..      75     170 .. 0.74
   2 !   28.0   0.0   6.5e-10   1.9e-06     166     226 ..     177     235 ..     165     247 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.44
                 TT.--EEEEEE-TTS-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE--- CS
         APH  19 pa.gryvlrrnpparaaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvp 78 
                 ++ ++ v ++  p     +i re+++l +L +  + v  +l++ +d+  +  +++++e v 
  CCD26235.1  87 EKqQPCVIKVLKPV-KMKKIYRELKILMNLTGG-PNVISLLDIVQDQSSKI-PALIFEEVK 144
                 44467788888888.889999999999999988.55878888666655554.666666665 PP

  == domain 2  score: 28.0 bits;  conditional E-value: 6.5e-10
                 EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCHHHHCCHHHCSCHCCCHCHHHHHH CS
         APH 166 tvllHgDlhpgNllvdpddgrvtGviDfedaglgpplyDlavllrswtseldpeflaallr 226
                 ++++H+D +p+N+++dp + ++  +iD+++a   +p +D  v ++s + + +pe+l +l +
  CCD26235.1 177 MGIMHRDVKPQNVMIDPKEKKL-RLIDWGLAEFYHPGVDYNVRVAS-RYHKGPELLVNLNQ 235
                 689*************888888.8***************9877755.55677777766655 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   6.2e-06     0.019     143     180 ..     175     212 ..      75     218 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 6.2e-06
                     G-EEEE-S--SGGGEEE.-CTTEEEE--GTT-EEEEHH CS
  Choline_kinase 143 spvvfcHnDlqegNillnkeekklvlIDFEYagynyrg 180
                     +++   H D+ ++N++ + +ekkl lID+  a +   g
      CCD26235.1 175 HSMGIMHRDVKPQNVMIDPKEKKLRLIDWGLAEFYHPG 212
                     447778***********************877766655 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.7e-05      0.05     323     360 ..     175     207 ..     160     223 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.7e-05
  Pkinase_fungal 323 flkagiLHrDiSenNilitdskkegerkglLiDLDlak 360
                     +   gi+HrD+  +N++i      +e+k  LiD  la 
      CCD26235.1 175 H-SMGIMHRDVKPQNVMID----PKEKKLRLIDWGLAE 207
                     4.78**************9....456778888877775 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.2e-05      0.21     134     165 ..     174     202 ..     161     208 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 7.2e-05
         Kdo 134 lhragvnHadlyaknillqqeeeeeaeiwliD 165
                  h++g++H+d+ ++n++++ +e    ++ liD
  CCD26235.1 174 CHSMGIMHRDVKPQNVMIDPKE---KKLRLID 202
                 6*******************98...8999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       570  (0.0317921); expected 358.6 (0.02)
Passed bias filter:                      383  (0.021362); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2507.73
//
Query:       CCD26236.1  [L=603]
Description: hypothetical protein NDAI_0H00620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.5e-39  135.4   0.0    3.4e-39  135.0   0.0    1.2  1  TP_methylase    Tetrapyrrole (Corrin/Porphyrin) Methylases
      1e-05   24.9   0.1    2.7e-05   23.5   0.1    1.8  1  Sirohm_synth_M  Sirohaem biosynthesis protein central
    4.6e-05   23.8   0.0    0.00012   22.4   0.0    1.6  1  NAD_binding_7   Putative NAD(P)-binding
      0.004   16.8   0.2       0.36   10.5   0.1    2.5  2  Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal


Domain annotation for each model (and alignments):
>> TP_methylase  Tetrapyrrole (Corrin/Porphyrin) Methylases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.0   7.7e-43   3.4e-39       2     210 ..     336     541 ..     335     544 .. 0.91

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 7.7e-43
  TP_methylase   2 lylVGvGpGdpellTvrAlralktadvvlgddsraleilldllaeel.eleapmgkekepleeayeeiaealaealragkdVvllvsGDPlvygtgs 97 
                   + lVG+GpG+   lT+ Al+ +ktad++l+d+ ++++ +ldl+++e+    a++++   ++e a++e  ++  +al+++k+Vv+l++GDP+++g+g+
    CCD26236.1 336 ISLVGAGPGSISMLTIGALHEIKTADLILTDK-LVPQAVLDLIPPETeTFIARKFPG--NAEHAQQELLQMGLTALQNDKKVVRLKQGDPYIFGRGG 429
                   789*****************************.************987666666666..89999********************************* PP

  TP_methylase  98 elvealrareagieveviPGvsslqaaaarlgiplteggevlsvl..lpglakeeereleallangdtlvllkaprklaelaelLkea.lyddttpv 191
                   e++ ++++  +g+e  v+PG ss  a    ++ip t++  + +vl  + +  k +   + +++  ++t v+l+a+++ +el++ L++  +++d  p+
    CCD26236.1 430 EEFLFFQE--NGFEPIVLPGLSSSLASTVVSKIPATQRAIADQVLicTGTGRKGSLPVIPEFVR-TRTTVFLMALHRSEELIDNLIKNgWDGDV-PA 522
                   ***99999..***********************************9844444556677777655.78999999******************966.** PP

  TP_methylase 192 avveragtedervvrgtle 210
                   a+vera+++d+rv+r++l+
    CCD26236.1 523 AIVERASCPDQRVTRTKLK 541
                   *****************97 PP

>> Sirohm_synth_M  Sirohaem biosynthesis protein central
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1     6e-09   2.7e-05       3      27 ..     149     173 ..     148     174 .. 0.94

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 6e-09
  Sirohm_synth_M   3 pLQIaiSTnGksPrLAaliRreier 27 
                     +LQI ++TnG +  LA++i+rei +
      CCD26236.1 149 GLQISVTTNGRGYILANRIKREIVN 173
                     6**********************76 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.7e-08   0.00012      11     102 ..      22     138 ..      15     139 .. 0.70

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.7e-08
  NAD_binding_7  11 lvvGgGevAa....rkvrklleagakvtvvapevkeele......................elvklaeeelekdlegadlviaatddrelneriae 80 
                    l++G Ge       rk++++l++ga  +++ p++++  +                      +l +l ++ +++ + +  ++   ++d+ l + i++
     CCD26236.1  22 LLIGTGEDSCsqtiRKAKSILKSGASPIIINPTSQSHYKklsiefahdpnfkllnrpfqlsDLTQLGRKLVSN-IVDRVFINLPPNDTLLARDIHN 116
                    667777655433449******************7444445666677775554544444332222222332333.444557888999********** PP

  NAD_binding_7  81 aakarrilvnvadkpelcdfif 102
                    ++ + ri++n   +pe ++f++
     CCD26236.1 117 QCIKLRIPINTFQRPEYSTFTM 138
                    **88****************85 PP

>> Sirohm_synth_C  Sirohaem biosynthesis protein C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.011        49       1      18 [.     176     193 ..     176     199 .. 0.91
   2 !   10.5   0.1   8.1e-05      0.36      22      57 ..     238     274 ..     229     282 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.011
  Sirohm_synth_C   1 PdnlgaAiekvgkLRkkL 18 
                     P+n+++ ++++g+LR ++
      CCD26236.1 176 PSNISEIVTNMGQLRDQI 193
                     899************987 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 8.1e-05
  Sirohm_synth_C  22 apdq.eegpkRMkWmskvcdswsleelaeldeedmek 57 
                       ++ +++ kR +W+s++ + + l +la+++ +++++
      CCD26236.1 238 EMTSkDQKLKRTRWLSQIMEYYPLSKLADITIDQLSD 274
                     4444367778********************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       649  (0.0361983); expected 358.6 (0.02)
Passed bias filter:                      473  (0.0263818); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.23s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 4533.38
//
Query:       CCD26237.1  [L=345]
Description: hypothetical protein NDAI_0H00630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-26   91.8   0.0    4.2e-26   90.8   0.0    1.5  1  Hydrolase_like  HAD-hyrolase-like
    7.9e-24   83.7   0.0    1.4e-23   82.9   0.0    1.4  1  Hydrolase_6     Haloacid dehalogenase-like hydrolase
    0.00075   19.6   0.0       0.05   13.7   0.0    2.8  2  HAD_2           Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.015   15.6   0.1        4.4    7.5   0.1    3.2  2  Hydrolase       haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0   9.4e-30   4.2e-26       2      72 ..     244     333 ..     243     336 .. 0.95

  Alignments for each domain:
  == domain 1  score: 90.8 bits;  conditional E-value: 9.4e-30
                     .STTSSHHHHHHHHHH....................---GGGEEEEES-TTTHHHHHHHCT-EEEEESSSSS-TTTHHHHHHHHT---SEE CS
  Hydrolase_like   2 lgKPepemydfalevl....................gsdpeevlmiGDrlatDiagAnnaGwksvLVltGvtrpedleepehkptyvaddl 72 
                     +gKP++++ydfa+ vl                     s++++v+m+GD++a+Di+gA+n+Gw+s+LV+tGv+r++d e+  +kpt ++dd+
      CCD26237.1 244 IGKPTKFTYDFAHDVLvnwrhklllstrepikvaqgPSPFNKVFMVGDNPASDIIGAQNYGWDSCLVKTGVYRESD-ELTYCKPTMIVDDV 333
                     6******************************99999999*************************************.54669********8 PP

>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   3.1e-27   1.4e-23       1     101 []      15     113 ..      15     113 .. 0.98

  Alignments for each domain:
  == domain 1  score: 82.9 bits;  conditional E-value: 3.1e-27
                  EEEESTTTSEETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHH.HHTT----GGGEEEHHHHHHHHHHHHSXXXEEEEESXHHHHHHHHH CS
  Hydrolase_6   1 flfDidGvLwrgdkaipgaaealnalraagkpvvllTNnsskseeeyakkl.eklgvditeeqvvtsataaaeylkkrkadkkvlvigeeglreelke 97 
                  f+fDidGvL+rg+++ipga +al+ l+++++p++llTN+++ +e+e+++ + + l+ +i++eq+v s+++ + +++k    +++l++g++ +r++++ 
   CCD26237.1  15 FAFDIDGVLLRGKTPIPGASDALKLLTKSKIPYILLTNGGGTTERERVQFIsKTLNTEISPEQIVLSHSPYKGLVNK---FERILAVGTPSVRHVAER 109
                  78*************************************************788**********************9...89**************** PP

                  TTXE CS
  Hydrolase_6  98 agfk 101
                  +gfk
   CCD26237.1 110 YGFK 113
                  **97 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.029   1.3e+02      79     114 ..      28      63 ..      22      93 .. 0.84
   2 !   13.7   0.0   1.1e-05      0.05     153     177 ..     284     309 ..     278     310 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.029
       HAD_2  79 kpydgvkelLeeLkeagyklgivTsksreaveekle 114
                 +p++g+ ++L+ L++ ++   + T++   + +e ++
  CCD26237.1  28 TPIPGASDALKLLTKSKIPYILLTNGGGTTERERVQ 63 
                 79***********************97776666554 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 1.1e-05
       HAD_2 153 eeviyvGDsp.tDieaakkagikvia 177
                 ++v++vGD+p +Di++a++ g +++ 
  CCD26237.1 284 NKVFMVGDNPaSDIIGAQNYGWDSCL 309
                 589******************99876 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1   0.00097       4.4       5     139 ..      16      49 ..      14     170 .. 0.71
   2 ?    4.3   0.0    0.0098        44     190     208 ..     283     302 ..     271     304 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.00097
                 EEESBTTTBCHH...HHHHHHHHHHCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHHHHCHHH CS
                 xxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   5 vfDkdGTLttge...psvedvivsaalalaaaletgsehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaqsqgrtv 100
                 +fD+dG+L++g+   p   d+++ +                                                                          
  CCD26237.1  16 AFDIDGVLLRGKtpiPGASDALKLL-------------------------------------------------------------------------- 40 
                 6777777776665555555554444.......................................................................... PP

                 HHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 101 allqaralavftiadplkvkpeaaeavasLkaagievvl 139
                                                + +i+ +l
  CCD26237.1  41 ------------------------------TKSKIPYIL 49 
                 ..............................333333333 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0098
                 GGGEEEEESSHH.HHHHHHH CS
                 xxxxxxxxxxxx.xxxxxxx RF
   Hydrolase 190 peevamVGDgvn.Daaalaa 208
                  ++v mVGD++  D+ ++++
  CCD26237.1 283 FNKVFMVGDNPAsDIIGAQN 302
                 578*********9*998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       302  (0.0168442); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2671.08
//
Query:       CCD26238.1  [L=354]
Description: hypothetical protein NDAI_0H00640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-37  127.9   4.6    1.8e-37  127.9   4.6    2.3  2  CIAPIN1   Cytokine-induced anti-apoptosis inhibitor 1, Fe-S b
    1.6e-33  115.8   0.1    2.5e-33  115.1   0.1    1.3  1  DRE2_N    Fe-S cluster assembly protein DRE2 N-terminus
  ------ inclusion threshold ------
      0.045   13.4   0.1        0.1   12.3   0.1    1.5  1  DUF4264   Protein of unknown function (DUF4264)
        2.2    8.1   7.5         14    5.5   6.4    2.6  2  zf-CSL    CSL zinc finger
        7.2    6.6   8.6         16    5.5   8.6    1.6  1  Nop16     Ribosome biogenesis protein Nop16


Domain annotation for each model (and alignments):
>> CIAPIN1  Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.4     0.094   3.4e+02      13      43 ..     184     214 ..     174     249 .. 0.62
   2 !  127.9   4.6   4.9e-41   1.8e-37       4     100 .]     254     347 ..     251     347 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.094
     CIAPIN1  13 kkrrkackdctCGlkeleeeeekkkraaadk 43 
                 + +  + k+c C ++++ e+++++  + +++
  CCD26238.1 184 TTTTNTKKKCVCKVHHTAEDNDDDLDDDEES 214
                 4455566889998888877777554444433 PP

  == domain 2  score: 127.9 bits;  conditional E-value: 4.9e-41
     CIAPIN1   4 kpeeCekkakkrrkackdctCGlkeleeeeekkkraaadkalekkvkleeeelaevdftvegkt.ssCgsCaLGDafrCsgCPylGlPafkpGekvel 100
                 ++  C k+++k++kackdc+CG+ke+eeee ++ r+++d+     vk++e+el+e+dft++gk+ ++CgsC+LGDafrC gCPylGlPafkpGe+++l
  CCD26238.1 254 TMIICGKSQTKKKKACKDCSCGIKEEEEEEIDNIRSQQDNV----VKFTEDELTEIDFTIDGKKiGGCGSCSLGDAFRCTGCPYLGLPAFKPGEAINL 347
                 566799*************************9999988885....799**************999******************************986 PP

>> DRE2_N  Fe-S cluster assembly protein DRE2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.1   7.1e-37   2.5e-33       3     131 .]       7     140 ..       5     140 .. 0.91

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 7.1e-37
                 EEEEE-HHHHTSHHHHHHHHHHHHTTE..EEEEEEHHHHHHT-----SSS--SEEEE---..SS-S----HHHHHHHHTT--TT--EE---H....HHH CS
      DRE2_N   3 tLLLapPsvathpekleaikklydsrs..stdlqmlDRlaaglvsLpastYdlvllltdeeeeeeelliprkliqkivkaLkpgGklkgqdgkakeaqk 99 
                 tLLL++P+v+t+pe++e++k+ +++r+   +++++++++++g+++L++++Yd+++++t+e  +++++l+p+kli+ + +aLk++G l+g ++    ++k
  CCD26238.1   7 TLLLIHPAVTTTPELVEDFKNNAPKRNwkVVNQFLINKINDGSIKLKNNEYDIIHYMTPE--ARDSILFPKKLIPILNSALKDNGLLYGLSD----TYK 99 
                 9*******************8888788899******************************..788***************************....7** PP

                 HHHHHHTEEEE-SSS........EEE-.XXXX..XXXXXXX CS
      DRE2_N 100 leallaGlvieeeekge......lvKp.eqee..eeavpLk 131
                 ++al++G++i++++  +      +vK+ + ++  ++a+pLk
  CCD26238.1 100 IDALINGFEIKNNDAAAdleayhWVKKpDTGAkkTVAIPLK 140
                 **********98888779*****887655544358888887 PP

>> DUF4264  Protein of unknown function (DUF4264)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   2.8e-05       0.1      18      39 ..      76      97 ..      75     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.8e-05
     DUF4264 18 kvVDfLNktLKdkdlmFGLskd 39
                k++ +LN  LKd++l++GLs  
  CCD26238.1 76 KLIPILNSALKDNGLLYGLSDT 97
                78899**************974 PP

>> zf-CSL  CSL zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   2.7      0.56     2e+03      46      53 ..     268     275 ..     235     278 .. 0.61
   2 ?    5.5   6.4    0.0039        14      39      52 ..     292     322 ..     252     323 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.56
                 EETTSSEE CS
      zf-CSL  46 qCssCSLw 53 
                  C++CS  
  CCD26238.1 268 ACKDCSCG 275
                 45555533 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0039
                 ....................--EEEETTSSE CS
      zf-CSL  39 e.................gaevvvqCssCSL 52 
                 +                 +++ + +C+sCSL
  CCD26238.1 292 DnvvkftedelteidftiDGKKIGGCGSCSL 322
                 144555555555555899************9 PP

>> Nop16  Ribosome biogenesis protein Nop16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.6    0.0044        16      83     147 ..     210     296 ..     139     308 .. 0.64

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0044
       Nop16  83 e....................eesdekklskgearieRDeeGkivkviegk.kkkeneledple.eleedeekeeeee.kkkktevvk 147
                 +                    + +de++++++    eRD++G+i  +i gk ++k+++  ++ +  ++e+ee+e + + ++++ +vvk
  CCD26238.1 210 DdeesgnsdvfsdsnkaqffdDLDDEESVEEEDLIEERDNNGNITMIICGKsQTKKKKACKDCScGIKEEEEEEID-NiRSQQDNVVK 296
                 0333444444555556777866666777777777778*************55444444444333033433333333.34777788886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1317  (0.0734564); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2532.41
//
Query:       CCD26239.1  [L=643]
Description: hypothetical protein NDAI_0H00650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-50  170.6   0.1    3.7e-50  169.8   0.1    1.5  1  Flavoprotein  Flavoprotein
  ------ inclusion threshold ------
        2.8    6.0  48.9      0.091   11.0  42.6    1.7  2  Nop14         Nop14-like family


Domain annotation for each model (and alignments):
>> Flavoprotein  Flavoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   0.1   4.1e-54   3.7e-50       2     158 .]     325     550 ..     324     550 .. 0.97

  Alignments for each domain:
  == domain 1  score: 169.8 bits;  conditional E-value: 4.1e-54
                   EEEEEE-SSCGGGCHHHHHHHHHH....TTEEEEEEESCHHHHCCHHGGS............................................... CS
  Flavoprotein   2 killgiTGsvaaikalellekLkk....egievqvvltkaAkkfiskeklklaa........................................... 51 
                   ++l+g++Gs+a++k++++++kL++    ++i++qv+lt +A+kf++k + k+ +                                           
    CCD26239.1 325 HVLFGACGSLAVFKIKSMIKKLEDiygkDKISIQVILTYSATKFFTKRYHKKYNksaplidsptseqqqqqqqheptanmsmatraeqmelpshiqv 421
                   9**************************99*****************99666655788**************************************** PP

                   ............TCSSHHHHHHCTTESEEEEEEEEHHHHHHHHTT--SSHHHHHHHT.HCCTTEEEEE.--HHCCTCSTCHHHHHHH..H.T..... CS
  Flavoprotein  52 ............redpilhielrrwadllviaPasantlakianGiadnlltlilra.takkpiliaPamnpamyenpqtlknlekl..e.egvtvi 132
                               r dp+lhielrrwad+lv aP++antl+ki +Gi+dnllt+++ra ++++pi++aP+m +++y+   t k+l+++  e +++tv+
    CCD26239.1 422 wtdqdewdtwkqRMDPVLHIELRRWADILVLAPLTANTLSKISLGICDNLLTCVIRAwNTNFPIFLAPSMFSSTYNTLMTRKQLKIIkeEmPWITVF 518
                   ****************************************************************************************879****** PP

                   .................GHHHHHHHHHHCHHT CS
  Flavoprotein 133 kPse......gdigkgkmaeieeivgkildkl 158
                   kPse      gdig+g+m + +eiv+k+++kl
    CCD26239.1 519 KPSEkvmsfnGDIGLGGMMDANEIVDKVVMKL 550
                   ***99************************986 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.4      0.32   2.8e+03     428     462 ..     164     199 ..     111     208 .. 0.54
   2 ?   11.0  42.6     1e-05     0.091     343     426 ..     555     637 ..     526     643 .] 0.39

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.32
       Nop14 428 kkkkkkkseekakeelpytfpcPes.heellellek 462
                 +++++++ ++++ ++ p  +++P++   e+ ell++
  CCD26239.1 164 TTTTTTTRDSTTTTKHPLKVEIPQEnSMEFTELLKG 199
                 113334444444455555555554313355555554 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 1e-05
       Nop14 343 taeee.eeededdfeedddlveseseeeeeeeeedeeeeedeeeeeeeeededdlsdleseeeeeedeleeelleeekkaaeekk 426
                 +++++ e++d+dd++++dd+++++++++eee++ d+++++d++++  +++d+dd++d+++++++++d+ ++e +e+++++a+e++
  CCD26239.1 555 KDQDQdEDDDNDDNDDNDDDNADQENNDEEEDDGDDNDDDDDDDD--DDDDDDDDEDDDEDDDDDDDKESNEYNETKSNNAKEET 637
                 222222444444444444333333333333333333333333332..22233333333333333333333444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1637  (0.0913046); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                       150  (0.00836633); expected 17.9 (0.001)
Passed Fwd filter:                        71  (0.00396006); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.27u 0.36s 00:00:01.63 Elapsed: 00:00:00.54
# Mc/sec: 3553.12
//
Query:       CCD26240.1  [L=135]
Description: hypothetical protein NDAI_0H00660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-20   71.6   0.1    8.5e-20   71.1   0.1    1.2  1  Trm112p   Trm112p-like protein


Domain annotation for each model (and alignments):
>> Trm112p  Trm112p-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.1   4.8e-24   8.5e-20       1      68 []       2     124 ..       2     124 .. 0.98

  Alignments for each domain:
  == domain 1  score: 71.1 bits;  conditional E-value: 4.8e-24
                 BTGGCCC-B-TTTHH........C-.............................-HHHHHHHHH.TT---S-SS----S..................CH CS
     Trm112p   1 kllllniLaCpackg........pL.............................dwealvevaa.lglnelpkekpedy..................el 43 
                 k+l++n+L+C+ +k         pL                             dw+a+++va  lg+++lp++kp +                   +l
  CCD26240.1   2 KFLTTNFLKCS-VKAcdtsndnfPLqydgstcqlvqdesiefnpefllnlmdrlDWSAILMVASdLGNTSLPQQKPVFNkdndelseedmiilkdfhTL 99 
                 799********.9999*******999************************************************************************* PP

                 HTTEECCCCEEEETTTTEEEEEETT CS
     Trm112p  44 lleldieegeLvCpncgraYpIkdG 68 
                 l++++i+eg++ C+ncg++Y+Ik++
  CCD26240.1 100 LIQTNIVEGQMKCRNCGHVYYIKNS 124
                 ***********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.26s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 997.11
//
Query:       CCD26241.1  [L=521]
Description: hypothetical protein NDAI_0H00670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.6e-32  109.5   0.0    2.1e-31  108.3   0.0    1.7  1  PIN_6         PIN domain of ribonuclease
    1.6e-25   89.0   0.8    4.6e-25   87.6   0.8    1.8  1  NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
  ------ inclusion threshold ------
      0.086   13.0   0.4       0.18   11.9   0.4    1.5  1  Zn-ribbon_8   Zinc ribbon domain


Domain annotation for each model (and alignments):
>> PIN_6  PIN domain of ribonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.0   3.5e-35   2.1e-31       1      89 []      19     109 ..      19     109 .. 0.98

  Alignments for each domain:
  == domain 1  score: 108.3 bits;  conditional E-value: 3.5e-35
       PIN_6   1 lVlDagaliknslsslqnlaeklyttpeVvaEirdkkarerlellpl..elevrePspesvkkvtefakktGDlsvLSktDievlALtyeL 89 
                 lVlDa++li+ns++++qn+ae++yttp+V++Ei+d++ar++le+++    l++ +P++ s++kv++fak tGD+svLS++Di++lALtyeL
  CCD26241.1  19 LVLDATPLITNSYTHYQNYAEEFYTTPTVFHEIKDEQARKNLEIWKDlgALKLLHPNQVSIDKVSKFAKLTGDYSVLSANDIHILALTYEL 109
                 8*********************************************445****************************************98 PP

>> NOB1_Zn_bind  Nin one binding (NOB1) Zn-ribbon like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.8   7.6e-29   4.6e-25       1      69 [.     351     425 ..     351     428 .. 0.92

  Alignments for each domain:
  == domain 1  score: 87.6 bits;  conditional E-value: 7.6e-29
  NOB1_Zn_bind   1 ikrvkswvlrChaCfkvt...kd.mtkkFCpkCGn.ktLkrvavsvden.gelklhlkknfqlnlrGtkyslpkp 69 
                   ikr+++++lrChaCfk++   kd + k+FCp+CG   tL r+avsvd++ g+++ hlk+nfq+n+rG++ys+++p
    CCD26241.1 351 IKRLRNYMLRCHACFKLFpasKDgKVKHFCPSCGGqGTLLRCAVSVDSEtGKITPHLKANFQWNNRGNRYSMASP 425
                   89**************9866544689*******9868************9**********************998 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4     3e-05      0.18       4      34 ..     357     385 ..     356     390 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
  Zn-ribbon_8   4 YeYrCeeCghefevlqsisdaplta.CPeCgs 34 
                  Y  rC++C + f    +++d + ++ CP+Cg+
   CCD26241.1 357 YMLRCHACFKLFP---ASKDGKVKHfCPSCGG 385
                  7778999876665...34499999*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2227  (0.124212); expected 358.6 (0.02)
Passed bias filter:                      598  (0.0333538); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.71u 0.31s 00:00:01.02 Elapsed: 00:00:00.46
# Mc/sec: 3391.93
//
Query:       CCD26242.1  [L=402]
Description: hypothetical protein NDAI_0H00680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-30  105.3   4.2    1.7e-30  105.0   1.8    2.5  2  SGS       SGS domain
    4.4e-11   43.7   0.3    8.5e-11   42.7   0.3    1.5  1  CS        CS domain
  ------ inclusion threshold ------
      0.012   15.7   6.1          7    7.0   0.6    3.5  3  TPR_2     Tetratricopeptide repeat
      0.062   13.5   6.3        1.7    9.0   1.0    3.7  3  TPR_8     Tetratricopeptide repeat
       0.19   12.3   2.1       0.53   10.8   0.1    2.6  3  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> SGS  SGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.2   8.1e+03      26      41 ..       6      21 ..       4      28 .. 0.78
   2 !  105.0   1.8   4.6e-34   1.7e-30       2      83 .]     321     402 .]     320     402 .] 0.98

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.2
         SGS 26 alnklFkklYadaded 41
                +l++ +++lY++ +++
  CCD26242.1  6 DLKTAYQTLYDHKNPE 21
                6677899999998887 PP

  == domain 2  score: 105.0 bits;  conditional E-value: 4.6e-34
         SGS   2 dWdklekelekeekeekkeeegeaalnklFkklYadadedtrrammKSyveSnGtvLstnWeevkkkkvetkpPegmeakkw 83 
                 dW+kl+ ++++    +++++e++++++++FkklYa+ad++t+rammKS++eSnGt+L+tnWeev+kk v+  pPeg+e+k+w
  CCD26242.1 321 DWSKLTLDNNDAAYGDNDDDEEGDSADAFFKKLYAGADPETQRAMMKSFIESNGTTLNTNWEEVSKKFVKPAPPEGTELKHW 402
                 9*********9999999999*************************************************************9 PP

>> CS  CS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.3   2.4e-14   8.5e-11       2      76 .]     194     275 ..     193     275 .. 0.90

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 2.4e-14
                 SCEEEEETTEEEEEEE-TTCTTTTTCEEEEEETTE...EEEEETSCEEEEECE........BSS-BETTTEEEEEETTEEEEEEEB CS
          CS   2 kydWyQtldeVvvtiyvkkvnikkkdvkvefkers...lkvkigkeklliege........LfgpIdpeesswtieskkveitLkK 76 
                 ++dWyQt+++V++++++  + ++k+d++ ++++++   l+v++   +++ +++        L ++Idp+   + + skk+e+t +K
  CCD26242.1 194 RTDWYQTPKTVTLSLFTASLPKSKEDIQTTLSSKDkrtLNVSY---PIP-DTSsefqynakLSHEIDPDAINVQLYSKKMEFTFTK 275
                 78*******************************9999999998...554.33447888888**********************998 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1     0.002       7.1      10      34 .]      13      37 ..      12      37 .. 0.92
   2 ?    2.8   0.1     0.045   1.6e+02      18      31 ..      65      78 ..      63      81 .. 0.88
   3 ?    7.0   0.6    0.0019         7      11      31 ..      98     118 ..      96     119 .. 0.91

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.002
       TPR_2 10 ayyklgdyeeAleafekAleldPnn 34
                 +y  +++e Ale+++  le  P+n
  CCD26242.1 13 TLYDHKNPENALELYNGILEQSPEN 37
                6899****************99987 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.045
       TPR_2 18 eeAleafekAleld 31
                e A+++++kAl l+
  CCD26242.1 65 ESAKKLLNKALDLA 78
                68*********997 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0019
       TPR_2  11 yyklgdyeeAleafekAleld 31 
                 y++l++y++ + +f+k+ e+d
  CCD26242.1  98 YFNLKKYQDSKIYFDKCKEYD 118
                 9***************98876 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.32   1.2e+03      15      34 .]      18      37 ..      12      37 .. 0.82
   2 ?    4.2   0.1     0.017        61      17      31 ..      64      78 ..      59      78 .. 0.86
   3 ?    9.0   1.0   0.00048       1.7      11      31 ..      98     118 ..      98     121 .. 0.94

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.32
                T-HHHHHHHHHHHHHHHHH. CS
       TPR_8 15 gdyeeAkeyyekaleldpdn 34
                ++ e+A e y+  le +p+n
  CCD26242.1 18 KNPENALELYNGILEQSPEN 37
                799*******9999998875 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.017
                HHHHHHHHHHHHHHH CS
       TPR_8 17 yeeAkeyyekaleld 31
                +e+Ak+ ++kal+l+
  CCD26242.1 64 IESAKKLLNKALDLA 78
                799*********985 PP

  == domain 3  score: 9.0 bits;  conditional E-value: 0.00048
                 HHHTT-HHHHHHHHHHHHHHH CS
       TPR_8  11 ylklgdyeeAkeyyekaleld 31 
                 y++l++y+ +k y+ k+ e+d
  CCD26242.1  98 YFNLKKYQDSKIYFDKCKEYD 118
                 99***************9987 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00015      0.53       1      32 [.      14      45 ..      14      51 .. 0.86
   2 ?   -0.6   0.0      0.56     2e+03      42      53 ..      65      76 ..      61      90 .. 0.70
   3 ?   -1.9   0.1       1.4   5.1e+03       3      27 ..     341     364 ..     341     367 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00015
      TPR_19  1 llaegdyaeAlalleqalqedpknaearllLA 32
                l++ +++++Al+l+  +l+++p+n++a ++ A
  CCD26242.1 14 LYDHKNPENALELYNGILEQSPENLNASIYKA 45
                567889*******************9987655 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.56
      TPR_19 42 deAealLdalpe 53
                + A++lL+++++
  CCD26242.1 65 ESAKKLLNKALD 76
                556666666554 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.4
      TPR_19   3 aegdyaeA..lalleqalqedpknaea 27 
                 +egd a+A   +l++ a   dp+ ++a
  CCD26242.1 341 EEGDSADAffKKLYAGA---DPETQRA 364
                 57888888777788777...7776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1255  (0.0699983); expected 358.6 (0.02)
Passed bias filter:                      540  (0.0301188); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 2799.61
//
Query:       CCD26243.1  [L=164]
Description: hypothetical protein NDAI_0H00690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.033   14.0   0.3      0.046   13.5   0.3    1.2  1  DUF4718   Domain of unknown function (DUF4718)


Domain annotation for each model (and alignments):
>> DUF4718  Domain of unknown function (DUF4718)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   2.6e-06     0.046      36     116 ..      26     107 ..      23     126 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.6e-06
     DUF4718  36 reifeeskfkeidervkqrs.skaklkahsqcvfisrnfhtGrlqlqeekrkkeeaeikaikdhskeefcladkkviedpee 116
                 r++++  ++ke++++    +  + k+++ s c  i+rn h  +  ++++   + + +   + +  k+ f++ + k+ ++p  
  CCD26243.1  26 RQLMDLNNLKETKDKTGDETvPNQKSRTMSMCTNITRNVHDTITPIKKNCTTRLTFHSLLSLEQQKDGFQTPESKIHNSPLL 107
                 78888899999999987665157899999***********************************************999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 1147.12
//
Query:       CCD26244.1  [L=143]
Description: hypothetical protein NDAI_0H00700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
     0.0046   16.8   0.4     0.0055   16.6   0.4    1.2  1  Peptidase_M73  Camelysin metallo-endopeptidase


Domain annotation for each model (and alignments):
>> Peptidase_M73  Camelysin metallo-endopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.4     3e-07    0.0055      92     156 ..      56     121 ..      29     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 3e-07
  Peptidase_M73  92 vkkdnegeDfgkhirvefLvnedkeee.visettLaeLkemspdvveedvlallleeegddleage 156
                    ++  ++ge+f kh++ + L  edk+++  i++ttL+e++e   + ++++ +a l ++ g+ l+  +
     CCD26244.1  56 AHMRENGEEFKKHLEFQKLLEEDKKKTwYIKNTTLTEVDESFFNNLKNKLAASLPGKAGSMLKKVK 121
                    4566889*********99999998765379***************999999888888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1091  (0.0608511); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1116.39
//
Query:       CCD26245.1  [L=274]
Description: hypothetical protein NDAI_0H00710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-31  107.8   0.0    5.4e-31  107.3   0.0    1.2  1  TRAPP     Transport protein particle (TRAPP) component
     0.0021   17.1   0.5      0.064   12.2   0.0    2.1  2  Dsl1_N    Retrograde transport protein Dsl1 N terminal


Domain annotation for each model (and alignments):
>> TRAPP  Transport protein particle (TRAPP) component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0   6.1e-35   5.4e-31       1     144 [.      43     190 ..      43     192 .. 0.91

  Alignments for each domain:
  == domain 1  score: 107.3 bits;  conditional E-value: 6.1e-35
       TRAPP   1 fafllgelvsylqrds.kdveevekrLekmGyrvGlrllelllarer.pretdilevlkfickdlWkllfgkqidnlktnhrge...yvltdnefpltr 94 
                 f++++g++vs+l++d  +d e+v+++L +mGy++G+rl+e++lar+  pr +++ ++ ++i+  ++k++++++++ +++ +++e   ++l+dn  pl++
  CCD26245.1  43 FTLTYGSIVSQLCNDFqRDFEKVNENLFSMGYNIGVRLIEDFLARTAlPRCENLVNTSEVISLCAFKIFLNITPQITNWDRKKEafsLILIDN--PLSE 139
                 899************94589*************************999********************************99999999*****..**** PP

       TRAPP  95 fvelpke.ls...ylaflcGiirGaLenlgfpakVtahelpsdelrgrttfeik 144
                 fvelp + ++   y+++lcG+++GaLe+++++++V      sd lrg+  +e++
  CCD26245.1 140 FVELPMDaMKelwYSNILCGVLKGALEMVQLDCDVWF---VSDILRGDPQTELR 190
                 ******9733588********************9987...34566666666655 PP

>> Dsl1_N  Retrograde transport protein Dsl1 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.1    0.0037        33      22      69 ..      17      65 ..       8      83 .. 0.78
   2 !   12.2   0.0   7.2e-06     0.064     163     205 ..     166     208 ..     146     235 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.0037
                XXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      Dsl1_N 22 sekskeekldleeilk.ketqLskeLhdlnkLktissLikefktnlell 69
                s++ k  kl  e+i k k +++++eL +l+   ++s+L ++f+ ++e +
  CCD26245.1 17 SSQIKSLKLTGEDIWKnKTEKINTELFTLTYGSIVSQLCNDFQRDFEKV 65
                3333577777888865156789***********************9986 PP

  == domain 2  score: 12.2 bits;  conditional E-value: 7.2e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      Dsl1_N 163 pdnildeesWlikdmelgdlqekvrnkLntilkdyiklnevve 205
                 +  +ld + W+++d+  gd q + r kLn ilkd i + +  +
  CCD26245.1 166 EMVQLDCDVWFVSDILRGDPQTELRIKLNRILKDEIPIGRRLS 208
                 5567999***************************887665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       554  (0.0308997); expected 358.6 (0.02)
Passed bias filter:                      377  (0.0210274); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2017.44
//
Query:       CCD26246.1  [L=745]
Description: hypothetical protein NDAI_0H00720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.1e-07   30.6   0.0    3.5e-06   26.7   0.0    2.6  2  Acyltransferase  Acyltransferase


Domain annotation for each model (and alignments):
>> Acyltransferase  Acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.9e-10   3.5e-06       2     133 ..      64     304 ..      63     306 .. 0.85
   2 ?   -3.5   0.0       0.4   7.2e+03      51      87 ..     693     731 ..     690     736 .. 0.67

  Alignments for each domain:
  == domain 1  score: 26.7 bits;  conditional E-value: 1.9e-10
  Acyltransferase   2 vrvtglenlpe.kgpailvaN.Hqsy.lDvlllwlllyksn.gp.....rnvviiakkellsipllgflmrllgfifidR.............. 72 
                      ++v+g +n+p+ ++p ilv+  H    +D+ l +    k   ++     r+  ++ +++ l+++l+gf+ r +g ++++R              
       CCD26246.1  64 IKVRGGYNIPPnGTPTILVCApHANQfIDPSLVMTTTRKLAaTHgssrgRQACFVTAASSLKLKLVGFFGRCMGSVPVERaqdnlkpvssniei 157
                      788999999987788888876488889999888876544443335567877777777777999******************************* PP

  Acyltransferase  73 .................................................................................ksnaraagsleni 85 
                                                                                                        +  +  ++ +n+
       CCD26246.1 158 yapdlinnstlikgrcrtgenispqftkrfnakgllglpnylsnaqiakvvddetiilsspfkssnpkvreyleegttfkyAKPIDNTQVFQNV 251
                      ********************************************************99999999999999999997776664444445555666 PP

  Acyltransferase  86 selleegklvviFPEGtrsregellpfkkGlvrlaakak.....kgvpivPva 133
                       + l+ +  v+iFPEG+     +llp k+G++ +a+ a+       v +vPv+
       CCD26246.1 252 FDHLHTKGCVGIFPEGGSHDRPSLLPIKAGVAIMALGAVaadpsMTVSVVPVG 304
                      668888899***************************99998888888899987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.4
  Acyltransferase  51 ellsipllgflmrllgfifidR..ksnaraagslenise 87 
                      +l ++p+l+++ +++++++ +   +s+ ++a++ ++i++
       CCD26246.1 693 SLSNVPILSEGRSNYRYVYDSSssDSDNEDATGNSKITS 731
                      677889999999999999877644555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       621  (0.0346366); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.29s 00:00:00.92 Elapsed: 00:00:00.45
# Mc/sec: 4946.76
//
Query:       CCD26247.1  [L=435]
Description: hypothetical protein NDAI_0H00730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 3298.75
//
Query:       CCD26248.1  [L=530]
Description: hypothetical protein NDAI_0H00740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-70  237.5   4.1    1.1e-70  237.5   4.1    2.4  3  STD1          STD1/MTH1
  ------ inclusion threshold ------
      0.024   14.9   0.2       0.27   11.5   0.0    2.5  3  Orthopox_F14  Orthopoxvirus F14 protein
       0.23   10.8   8.0      0.089   12.1   4.9    1.8  2  DUF4407       Domain of unknown function (DUF4407)


Domain annotation for each model (and alignments):
>> STD1  STD1/MTH1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3      0.42   2.5e+03      11      22 ..     100     111 ..      23     159 .. 0.59
   2 !  237.5   4.1   1.8e-74   1.1e-70       3     205 .]     165     411 ..     163     411 .. 0.94
   3 ?   -2.2   1.6      0.44   2.6e+03      13      47 ..     434     467 ..     417     504 .. 0.49

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.42
        STD1  11 siesapsyesse 22 
                   +++p+ ++  
  CCD26248.1 100 GFVNTPTRYTYR 111
                 333333333333 PP

  == domain 2  score: 237.5 bits;  conditional E-value: 1.8e-74
        STD1   3 lsssssqssiesapsyessete.....e..dsidlqvksllsdilledalpkqqkklddmynpeelkksllndellyngrpe....eLiDWelNkiRSl 90 
                 ++ ss+qss++s+ps  +s+ +     +   ++++++++++++++ e+a+p     ++dmy pe+l++++++ +llyngrp+    eL+DW+lN+iRSl
  CCD26248.1 165 NA-SSYQSSVFSMPSAVTSSASsyrqeQgaYTNHIPTRKFIKQVTIEEAIPP---FFQDMYFPEILISESTSGTLLYNGRPSftkrELLDWDLNDIRSL 259
                 55.899********777777666666426799*******************9...****************************9877************ PP

        STD1  91 LileklPsrpewgnslpeiv...............kslpqfrfvlLpldssdeeiietLvsSdlYkEhnldysfklsvAkysvkkarklqeqs...... 168
                 Li+ekl  r ewgn+lpei+               ++ p+f+f+lLpldssde+ii+tL++SdlY E++ldy+fkl++Aky+v++ar+++eq+      
  CCD26248.1 260 LIVEKL--RYEWGNQLPEIItrnhdktdtntgssaAAIPKFKFTLLPLDSSDEFIINTLANSDLYLEADLDYEFKLTSAKYTVMAARRRHEQLlmnnan 356
                 ******..9***********99988888888777777777*********************************************************** PP

        STD1 169 ..................kelskpewrnIirnYLlnLAveaqcrreykeklkekk 205
                                   +elskpewrnIi+nYLln+Aveaqcr+++ke+++e+k
  CCD26248.1 357 nnspqtqlnsnhqqanmnMELSKPEWRNIIENYLLNIAVEAQCRFDFKERCSEFK 411
                 ****************************************************987 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.44
        STD1  13 esapsyesseteedsidlqvksllsdilledalpk 47 
                 ++++ y+ ++++ +++ l  ++l +++ ++++ + 
  CCD26248.1 434 QQQQAYNAKKNN-SNNGLLKRALWKNFNKKESAVV 467
                 111111111111.4444444455566666665553 PP

>> Orthopox_F14  Orthopoxvirus F14 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.18   1.1e+03      21      42 ..     122     143 ..     115     146 .. 0.82
   2 ?   -3.5   0.0       2.2   1.3e+04      19      35 ..     312     328 ..     307     332 .. 0.71
   3 ?   11.5   0.0   4.5e-05      0.27      15      71 ..     363     421 ..     356     423 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.18
  Orthopox_F14  21 sqlstsdtdieidedditelln 42 
                   s+ +t+d  i  d+d+i  + n
    CCD26248.1 122 SKITTTDEKIHKDNDQIPRMRN 143
                   67889***********977655 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 2.2
  Orthopox_F14  19 iisqlstsdtdieided 35 
                   ii  l+ sd+ +e d d
    CCD26248.1 312 IINTLANSDLYLEADLD 328
                   67777777777777755 PP

  == domain 3  score: 11.5 bits;  conditional E-value: 4.5e-05
  Orthopox_F14  15 dlnsiisqlstsdtdieide.ddite..llniltelGcdvdfdedfsdiaddvleslieq 71 
                   +lns   q++ +++++   e  +i+e  llni  e  c  df e  s+     l+  +eq
    CCD26248.1 363 QLNSN-HQQANMNMELSKPEwRNIIEnyLLNIAVEAQCRFDFKERCSEFKKWKLQHQLEQ 421
                   56664.57888899888776469998889****************999887777777776 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       0.2   1.2e+03     136     167 ..     118     149 ..     102     196 .. 0.67
   2 ?   12.1   4.9   1.5e-05     0.089     207     249 ..     383     454 ..     317     469 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.2
     DUF4407 136 aeleaqiaalqaeidaaearldalraeaqkel 167
                 ++l ++i+  +++i + ++++ + r+ +++e 
  CCD26248.1 118 KRLSSKITTTDEKIHKDNDQIPRMRNSFEREP 149
                 34445555555555555555555555555554 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 1.5e-05
     DUF4407 207 d...............................atarlaalraelaeleaerakeraasqaaaaaddGllarlea 249
                 +                                +++l+++ +el++ ++++++++a +++++++++Gll+r  a
  CCD26248.1 383 RniienyllniaveaqcrfdfkercsefkkwkLQHQLEQQAEELTRQQQQQQQQQAYNAKKNNSNNGLLKR--A 454
                 2555666666666666777777777778788899***********************************99..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2993  (0.166936); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.30s 00:00:00.95 Elapsed: 00:00:00.44
# Mc/sec: 3610.13
//
Query:       CCD26249.1  [L=56]
Description: hypothetical protein NDAI_0H00750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-16   60.6   8.4    1.3e-16   60.5   8.4    1.0  1  Pmp3      Proteolipid membrane potential modulator
  ------ inclusion threshold ------
       0.03   14.4   3.9      0.036   14.1   3.9    1.1  1  BTP       Chlorhexidine efflux transporter
        2.1    7.7   3.7        2.2    7.6   3.7    1.0  1  DUF4191   Domain of unknown function (DUF4191)


Domain annotation for each model (and alignments):
>> Pmp3  Proteolipid membrane potential modulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   8.4   2.3e-20   1.3e-16       2      48 ..       7      53 ..       6      54 .. 0.96

  Alignments for each domain:
  == domain 1  score: 60.5 bits;  conditional E-value: 2.3e-20
        Pmp3  2 illillaiilPPlaValksGcsadllinilLtllgylPgviHAfyii 48
                +++il+ai+lPPlaV+  +G+++ +++ i+Lt+l+++Pg+++A+yi+
  CCD26249.1  7 LVNILIAIFLPPLAVFAARGFGTSFIVDIILTILAWVPGMLYALYIV 53
                789******************************************97 PP

>> BTP  Chlorhexidine efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   3.9     6e-06     0.036      16      55 ..      10      49 ..       9      51 .. 0.94

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 6e-06
         BTP 16 glllllvpllawllgvslleagvldiglslfalvwnfvyN 55
                +l+++++p la++   ++++++++di+l+++a v  ++y 
  CCD26249.1 10 ILIAIFLPPLAVFAARGFGTSFIVDIILTILAWVPGMLYA 49
                79******************************99999886 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.7   0.00037       2.2      24      69 ..       6      53 ..       3      56 .] 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00037
     DUF4191 24 kllwlllaaflvvvvvfvvlglllg..slilllilgillgllvalivl 69
                kl+ +l+a+fl +++vf + g+ ++    i+l+il+ + g+l al++ 
  CCD26249.1  6 KLVNILIAIFLPPLAVFAARGFGTSfiVDIILTILAWVPGMLYALYIV 53
                68899**************99986432577888888889999998764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       463  (0.0258241); expected 358.6 (0.02)
Passed bias filter:                      197  (0.0109878); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.24s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 418.88
//
Query:       CCD26250.1  [L=160]
Description: hypothetical protein NDAI_0H00760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1047  (0.058397); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1235.65
//
Query:       CCD26251.1  [L=152]
Description: hypothetical protein NDAI_0H00770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       473  (0.0263818); expected 358.6 (0.02)
Passed bias filter:                      237  (0.0132188); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1227.91
//
Query:       CCD26252.1  [L=468]
Description: hypothetical protein NDAI_0H00780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.023   15.0   0.4        1.1    9.6   0.1    2.9  3  BTB_2     BTB/POZ domain


Domain annotation for each model (and alignments):
>> BTB_2  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   6.3e-05       1.1       2      70 ..      84     162 ..      83     174 .. 0.82
   2 ?   -3.3   0.0      0.65   1.2e+04      74      87 ..     187     200 ..     178     203 .. 0.79
   3 ?    2.2   0.0     0.013   2.2e+02      37      58 ..     238     259 ..     219     272 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 6.3e-05
                 EEEETTEEEEEEHHHHHTSTTSTTTSSGG............GGEETTTTEEEE-S-HH.HHHHHHHHHHS..S-B---T CS
       BTB_2   2 klnVgGtrfetskstLsrkpdtlLgkllkte........elddydeetneyffDRspk.lFetiLnyyrtg.gkLhrpe 70 
                 +ln+  + + ++k+ L  +pdtlL ++  ++         ++   + t+e++++  p+  Fe+ + +y     +L++  
  CCD26252.1  84 HLNIEEKHYYMTKDQLLSFPDTLLLRMFPKRmfltkcgtAIQPIFSMTDEIYVESFPSsCFEYMMSIYTAArNDLKKYY 162
                 688888899999999999*********9988999999954888899999****9987648********98767777665 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.65
                 HHHHHHHHHHHT-- CS
       BTB_2  74 lkslleElefygle 87 
                 +  l+e+l++y + 
  CCD26252.1 187 ILVLKEDLDYYCIP 200
                 56789999**9885 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.013
                 EETTTTEEEE-S-HHHHHHHHH CS
       BTB_2  37 ydeetneyffDRspklFetiLn 58 
                  + + +eyf+D ++ +F+ i++
  CCD26252.1 238 IKIAASEYFLDEQNGIFHGIIT 259
                 556789************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1041  (0.0580624); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 3305.75
//
Query:       CCD26253.1  [L=663]
Description: hypothetical protein NDAI_0H00790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2842  (0.158514); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.90u 0.30s 00:00:01.20 Elapsed: 00:00:00.47
# Mc/sec: 4240.16
//
Query:       CCD26254.1  [L=1075]
Description: hypothetical protein NDAI_0H00800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-45  153.6   0.1    3.9e-45  153.6   0.1    2.5  4  E1-E2_ATPase     E1-E2 ATPase
    8.2e-30  104.7   0.0    2.3e-29  103.2   0.0    1.7  2  Hydrolase        haloacid dehalogenase-like hydrolase
    2.8e-26   91.7  12.7    2.7e-13   50.2   2.8    3.5  3  HMA              Heavy-metal-associated domain
      4e-05   23.5   7.6    0.00027   20.8   0.1    4.1  4  Hydrolase_3      haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.054   13.6   2.4        4.6    7.3   0.4    2.5  2  Spore_YhcN_YlaJ  Sporulation lipoprotein YhcN/YlaJ (Spore_Yhc
       0.22   11.2   8.8       0.75    9.5   1.1    2.6  2  MTHFR_C          Methylene-tetrahydrofolate reductase C termi
        2.8    8.0   5.8        1.6    8.8   2.8    2.2  2  DUF1656          Protein of unknown function (DUF1656)


Domain annotation for each model (and alignments):
>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       3.4   8.8e+03      48      65 ..      36      53 ..      32      60 .. 0.74
   2 ?   -3.4   0.2       2.2   5.7e+03     151     168 ..     321     338 ..     307     340 .. 0.65
   3 !  153.6   0.1   1.5e-48   3.9e-45      15     179 ..     482     662 ..     463     664 .. 0.91
   4 ?   -3.8   0.1         3   7.8e+03     155     169 ..     978     992 ..     969     996 .. 0.77

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 3.4
                  SEEE-TTTS---S-EE-G CS
  E1-E2_ATPase 48 aevdesaLTGEslpveke 65
                  + ++ s++TGE +   k 
    CCD26254.1 36 KDCNVSLVTGECHVLFKA 53
                  578999*****8877774 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 2.2
                   HHHHHHHHS-TTHHHHHH CS
  E1-E2_ATPase 151 alallvaaiPcaLplavp 168
                   +  +l + iP a+p++++
    CCD26254.1 321 FTMILYMGIPMAFPIVMS 338
                   334566778888888775 PP

  == domain 3  score: 153.6 bits;  conditional E-value: 1.5e-48
                   -EEEEGGG--TTSEEEEETT-B--SEEEEEEE-SEEE-TTTS---S-EE-G-TTEE-TT-EEEE-EEEEEEEE-TTTSTTTTTSTTS--------HH CS
  E1-E2_ATPase  15 eeeidakelvpGDivllkagdrvpaDgrivegsaevdesaLTGEslpvekekgdmvfsGtvvvsgeakavVtatgedtelgkiarlveeakskktpl 111
                     ei++  l+++D v++k+g+++paDg++++g++evdes++TGEs  ++k+kg+++++G+ +  g++ +  t++g+dt+l++i++ +++a+ +++p+
    CCD26254.1 482 HIEIPTTLLQINDTVEIKPGMKIPADGILIKGETEVDESLMTGESILIHKQKGSKIIAGSLNGPGHFYFQTTNVGNDTKLSHIIQTMKTAQLNQAPI 578
                   356********************************************************************************************** PP

                   HHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT...............HHHHH.HHHHHHHHS-TTHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase 112 qkkldklgkvlvpvvlliallvflialllgksla...............eallr.alallvaaiPcaLplavplalalgarrla 179
                   q+ +d l++++vp++ll+all+fl++ +l ++l                ++ l+ a +++v+a+PcaL+la+p+a+++g++  a
    CCD26254.1 579 QRYADYLASIFVPTILLLALLTFLVWSILANKLEnpppmftdmankgkfYMCLQmATSVIVVACPCALGLATPTAIMVGTGVGA 662
                   ****************************99999899999*********9666666************************98776 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 3
                   HHHHS-TTHHHHHHH CS
  E1-E2_ATPase 155 lvaaiPcaLplavpl 169
                    + +iP+a++++vp 
    CCD26254.1 978 NIFMIPIAMGILVPW 992
                   57899*****99986 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.2   5.7e+03      91     137 ..     238     283 ..     206     285 .. 0.69
   2 !  103.2   0.0   8.9e-33   2.3e-29       1     206 [.     680     903 ..     680     905 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.2
                 HHHHHHCHHHHHHTTHHHHHHHHH...HTHHBHTTHHHHHHHHHHTTEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  91 gsaqsqgrtvallqaralavftia...dplkvkpeaaeavasLkaagiev 137
                 +  + qg ++  l    l++  i+   d+   k ++++ +a++k++g+ev
  CCD26254.1 238 ENKEIQGIISTDL--TNLQIGSISiqyDE--RKIGTRDILAHIKEMGYEV 283
                 5555555555555..33333333332455..7889999999999999987 PP

  == domain 2  score: 103.2 bits;  conditional E-value: 8.9e-33
                 SSEEEEESBTTTBCHHHHHHHHHHHH..CHHHHHHHHHH......HHCHHHHHHHHHHHHH..HHHHHHHHH......ETTTE............HHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx......xxxxxxxxxxxxxxxx..xxxxxxxxx......xxxxx............xxxx RF
   Hydrolase   1 iktvvfDkdGTLttgepsvedvivsa..alalaaaletg......sehpigkalvaaakar..sgaltgfat......figrg............ayai 71 
                 i+t+vfDk+GTLttg + v  +i  +   l   a+l+++      sehp +ka+ +++ +    g+  +f        + g+g            ++ +
  CCD26254.1 680 IETIVFDKTGTLTTGLMKVNNFIIFNsgYLTNEAILQLVgaveslSEHPTAKAILNYCTEFsnFGKGNNFVDimsneiIMGKGikcrcklgdvthEVIV 778
                 78*******************888888877777777777777888****************98555566666322333556669999999999998888 PP

                 THHHHHHHHHCHHHHHHHHHHHHHHCHHHHHH..TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTGGGESEEEEHHC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  72 gkpewltaldippdlgaaigsaqsqgrtvall..qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraanqlGddyfdaviasdi 168
                 g++  l +        ++  +   +g t  ++  ++ + + f+i+d+  vk +  e+v+ L   g+ ++++tgd++  a+++a+ +G           i
  CCD26254.1 779 GQKSILPKS----ISIENENTDTNDGFTISFVsiDDILIGKFEISDT--VKTDSFETVQLLSNLGYSIYMVTGDSHGAAMKIAESVG-----------I 860
                 888888888....333333344444444444456889**********..**************************************...........5 PP

                 ES...STTTSHHHHHHHHHHHT..STGGGEEEEESSHHHHHHH CS
                 xx...xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxx RF
   Hydrolase 169 et...vakpspegkvaaireLq..gkpeevamVGDgvnDaaal 206
                 +     ++  p+gk  ++++L+  + +e+va+VGDg+nDa+ l
  CCD26254.1 861 NYqnvYSEITPDGKCNIVEQLKqeIGGEKVAFVGDGINDAPVL 903
                 555669***************95555999***********987 PP

>> HMA  Heavy-metal-associated domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   1.4     1e-14   2.7e-11       4      61 ..      13      72 ..      11      73 .. 0.95
   2 !   50.2   2.8     1e-16   2.7e-13       3      62 .]     100     159 ..      99     159 .. 0.97
   3 ?    1.9   0.0      0.12     3e+02      23      62 .]     242     282 ..     240     282 .. 0.77

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1e-14
         HMA  4 vsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaes..tklrkiieaiekagy 61
                v+gm+C +C +++   L++l gV++++v+l+t+++ V ++a++  t++++i+e+ie++g+
  CCD26254.1 13 VQGMTCSACTNAILTQLKNLAGVKDCNVSLVTGECHVLFKADEngTNVETIKETIEDCGF 72
                89*************************************777768999***********8 PP

  == domain 2  score: 50.2 bits;  conditional E-value: 1e-16
         HMA   3 rvsgmhCagCaakvekvLselpgVesvkvdlatktvtVegdaestklrkiieaiekagyk 62 
                 +v+gm+C +C++++++ +s ++gVe+++v+l  + ++V +d+ ++++ +i e+ie++g++
  CCD26254.1 100 AVKGMTCSACVNAITQQVSQIKGVEKCEVSLMMSNCEVIYDDNKISIDTIAETIEDCGFD 159
                 799*******************************************************96 PP

  == domain 3  score: 1.9 bits;  conditional E-value: 0.12
         HMA  23 lpgVesvkvdlat.ktvtVegdaestklrkiieaiekagyk 62 
                 ++g+ s ++ +   ++  + +d+ ++  r+i++ i+++gy+
  CCD26254.1 242 IQGIISTDLTNLQiGSISIQYDERKIGTRDILAHIKEMGYE 282
                 556655555444448889999****999************7 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.3      0.35   8.9e+02      96     192 ..     128     237 ..      93     253 .. 0.54
   2 ?    0.7   0.0      0.14   3.5e+02     135     203 ..     707     774 ..     692     778 .. 0.71
   3 ?    2.9   0.0     0.029        75      16      55 ..     822     861 ..     817     876 .. 0.87
   4 !   20.8   0.1     1e-07   0.00027     175     244 ..     863     928 ..     860     931 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.35
                  CEEEEEESSEEEESTT.............THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTE.EEEEESTTEEE CS
  Hydrolase_3  96 veillytedkvyvlnk............eksekkkkeeektkkkkeeidseeeledeeiakililkdkekldelekelksklnkll.titssskgyle 180
                  v++++++++ +y  nk              ++  + +  ++ kk++++++++ ++ ++++  ++   +++++ ++++ +s   ++  ++++s  ++++
   CCD26254.1 128 VSLMMSNCEVIYDDNKisidtiaetiedCGFDAMILNSCDYVKKNDKDSNDSSNPIKNVTLTILAPANNDIETFISTSTSTSTSTStSTSTSRSSSIQ 225
                  55555555555555555555556553332222222222222233333333333333333333366666666666655555544433255555555555 PP

                  EEETT-SHHHHH CS
  Hydrolase_3 181 impkgvsKgtal 192
                    + +  K +al
   CCD26254.1 226 SSEFDSEKFKAL 237
                  555555555555 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
                  HHHCHCSESEEEEES-HHHHHHHHHHHHHHCTTTEEEEEESTTEEEEEETT-SHHHHHHHHHHHCT--G CS
  Hydrolase_3 135 eeledeeiakililkdkekldelekelksklnklltitssskgyleimpkgvsKgtalkklakelnisl 203
                   +l++e i +++   ++ +   ++k++ + +  +++++  ++++++im++++  g+++k  +k  ++++
   CCD26254.1 707 GYLTNEAILQLVGAVESLSEHPTAKAILNYCT-EFSNFGKGNNFVDIMSNEIIMGKGIKCRCKLGDVTH 774
                  55556666666644444444555666666664.45999**************99999999988776665 PP

  == domain 3  score: 2.9 bits;  conditional E-value: 0.029
                  --HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCC CS
  Hydrolase_3  16 isektkeaikklkekgikvviATGRslravlpvleelgld 55 
                  ++  + e+++ l++ g+ +   TG s+ a+++++e++g++
   CCD26254.1 822 VKTDSFETVQLLSNLGYSIYMVTGDSHGAAMKIAESVGIN 861
                  66778899999**************************998 PP

  == domain 4  score: 20.8 bits;  conditional E-value: 1e-07
                  STTEEEEEETT-SHHHHHHHHHHHCT--GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSEEE- CS
  Hydrolase_3 175 skgyleimpkgvsKgtalkklakelnisleeviafGDgeNDieMLeaaglgvAmgnaseevkkaAdyvtk 244
                  ++ y ei+p g  K + +++l +   i  e+v+ +GDg ND + L  + lg+A+ +++e +  aAd v+ 
   CCD26254.1 863 QNVYSEITPDG--KCNIVEQLKQ--EIGGEKVAFVGDGINDAPVLVTSTLGIALSSGTEIAMDAADLVIL 928
                  55666666665..7777788774..57789************************************9986 PP

>> Spore_YhcN_YlaJ  Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.1    0.0068        17      64     110 ..      24      68 ..      20      71 .. 0.78
   2 ?    7.3   0.4    0.0018       4.6      62     105 ..     110     153 ..      85     156 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.0068
  Spore_YhcN_YlaJ  64 niaqrverlegVedarvlvtgndvlVavqtde..sdnekvkkkVketVe 110
                      +i  ++++l gV+d++v    +++ V  ++de  ++ e +k+    t+e
       CCD26254.1  24 AILTQLKNLAGVKDCNVSLVTGECHVLFKADEngTNVETIKE----TIE 68 
                      5778999**********99999*******9955555555555....554 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0018
  Spore_YhcN_YlaJ  62 aqniaqrverlegVedarvlvtgndvlVavqtdesdnekvkkkV 105
                      +++i+q+v++++gVe++ v  +  ++ V ++ ++   + +++++
       CCD26254.1 110 VNAITQQVSQIKGVEKCEVSLMMSNCEVIYDDNKISIDTIAETI 153
                      679****************9888888888886655555555555 PP

>> MTHFR_C  Methylene-tetrahydrofolate reductase C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.1   0.00029      0.75      19      52 ..      15      48 ..       3      71 .. 0.86
   2 ?    5.2   1.3    0.0065        17      14      62 ..      98     147 ..      86     182 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00029
     MTHFR_C 19 eekCkaCgdCvlaetggiCpvsrCakkllnGpCg 52
                  +C+aC + +l+++  +  v++C  +l+ G C 
  CCD26254.1 15 GMTCSACTNAILTQLKNLAGVKDCNVSLVTGECH 48
                457******************************6 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.0065
     MTHFR_C  14 evkvleekCkaCgdCvlaetggiCpvsrCakkllnGpCggsk.ngkCevk 62 
                  + v   +C+aC + + +++++i  v++C  +l+   C+    ++k  ++
  CCD26254.1  98 YIAVKGMTCSACVNAITQQVSQIKGVEKCEVSLMMSNCEVIYdDNKISID 147
                 4455566899999999**********************987535565555 PP

>> DUF1656  Protein of unknown function (DUF1656)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.4   8.7e+03      22      36 ..     360     374 ..     358     378 .. 0.78
   2 ?    8.8   2.8   0.00064       1.6       4      26 ..     585     607 ..     584     611 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3.4
     DUF1656  22 ltlllrrllarlgly 36 
                  +++++ +l rlg y
  CCD26254.1 360 GFIITTYVLVRLGSY 374
                 678888899999876 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.00064
     DUF1656   4 lgGvyvPpllvlallAllltlll 26 
                 l+ ++vP++l+lall +l++ +l
  CCD26254.1 585 LASIFVPTILLLALLTFLVWSIL 607
                 6789****************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1075 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1430  (0.079759); expected 358.6 (0.02)
Passed bias filter:                      696  (0.0388198); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.87u 0.34s 00:00:01.21 Elapsed: 00:00:00.48
# Mc/sec: 6787.03
//
Query:       CCD26255.1  [L=377]
Description: hypothetical protein NDAI_0H00810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-74  250.3   0.1    3.1e-74  249.9   0.1    1.0  1  tRNA-synt_1b  tRNA synthetases class I (W and Y)
  ------ inclusion threshold ------
      0.046   13.7   0.5      0.066   13.2   0.5    1.3  1  Securin       Securin sister-chromatid separation inhibitor


Domain annotation for each model (and alignments):
>> tRNA-synt_1b  tRNA synthetases class I (W and Y)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.9   0.1   3.5e-78   3.1e-74       7     290 ..      44     337 ..      41     340 .. 0.95

  Alignments for each domain:
  == domain 1  score: 249.9 bits;  conditional E-value: 3.5e-78
                   EEEEEEETSSS-BGG.GHHHHHHHHHHHH........TTSEEEEEEEHHHHHTTTTT-SSHHHHHHHHHHHHHHHHHHHHHTCHTTTEEEEETHHHH CS
  tRNA-synt_1b   7 rvysGidPTgklHlG.ylvplkklvelqk........aghevffliaDlhAiigdpskaeerklrkreevlenaikaqlakgldpekaevvlqsewl 94 
                   +++s+i+PTg +HlG yl++++++ ++++        +  +++f +aDlhAi++++   ++ +lrk ++++ ++   +la+g+dp+ka +++qs+++
    CCD26255.1  44 TIFSMIQPTGMFHLGnYLGATRVWSDICNlktsvslkDSPKLIFGVADLHAITVPKPHPNSTQLRKYRHEAIAS---ILAVGVDPKKAIIMYQSSIP 137
                   689********************************99999*****************9999999*******999...******************** PP

                   TTHHHHHHHHHHHTTCBHHHHHHHHHCCHHCSS.SC--BHHHHHHHHHHHHHHHHTCHSEEEEEGGGHHHHHHHHHHHHHHHHH...STTSS-EEEE CS
  tRNA-synt_1b  95 ehlelaellrdlgklgslnrmlqfksvkkrlee.gegislgeftYplLqaaDilllkadlvpgGsDQkqnielgrdlarrfnkk...evfkkpeglt 187
                   eh++l+++l++++++g lnrm+q+ks +k  ++ +++++lg+f+Yp+LqaaDill+k+++vp+G+DQ q++el r la +fnk+   ++f++p +++
    CCD26255.1 138 EHTQLHWILSTIASMGYLNRMTQWKSKSKAESTaDTNVRLGLFSYPILQAADILLYKSTHVPVGDDQAQHLELCRSLAVQFNKMyrtKIFPIPRTIL 234
                   **************************5555555569************************************************************* PP

                   ET...-BBSTTSSSBTTCETTC..GC-BTTCCHHHHHHHHHHCHCSTTC.SHHHHHHHHHTHHHCHHHHHHHHCCSEEESSHHHHHHHHHCCCCHHH CS
  tRNA-synt_1b 188 vp...lltgldGekKmSKSagn..saIfLddekesvkkkiqkavtdsde.evekllklktelsnelierleavsgkkpkreaeellaeevtklvhgg 278
                    p   +l++ + ekKmSKS++n  s+If+++  +++  ki++a+tds    +e+++++++ +sn li++l+ +++k+     ee+  +e++++ +++
    CCD26255.1 235 APtkkILSLKSSEKKMSKSDPNhdSVIFMNETSDEISRKIKSALTDSIVdHFEYDPENRPSVSN-LINILSGIQRKSI----EEV-DQEISCMNNYK 325
                   *************************************************99*************.**********998....888.566666679** PP

                   HHHHHHHHHHHH CS
  tRNA-synt_1b 279 dlkkalaealne 290
                    +k+  +e+l e
    CCD26255.1 326 SFKNHITEVLVE 337
                   ***999998876 PP

>> Securin  Securin sister-chromatid separation inhibitor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.5   7.4e-06     0.066      50     121 ..     216     289 ..     155     328 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.4e-06
                 XXXXXX..XXXX..XXXX.XXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX-- CS
     Securin  50 vklkky..GsvlnigknlskpktkslvlkD.iavkskneeesesdelsekkeselskklksallksdssd.eleed 121
                 v+ +k+   +++ i+  + +p++k l+lk  ++  sk + + +s+ + ++++ e s k+ksal+ s+    e  +d
  CCD26255.1 216 VQFNKMyrTKIFPIPRTILAPTKKILSLKSsEKKMSKSDPNHDSVIFMNETSDEISRKIKSALTDSIVDHfE--YD 289
                 44555556799999999*9**********95455566666889999999*************7777654442..22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       581  (0.0324056); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2778.87
//
Query:       CCD26256.1  [L=356]
Description: hypothetical protein NDAI_0H00820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-35  120.1  21.2      5e-07   30.3   0.1    7.2  7  WD40           WD domain, G-beta repeat
    1.4e-12   47.7   8.8      0.002   18.4   0.1    6.0  6  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
  ------ inclusion threshold ------
      0.035   13.1   4.8       0.67    8.9   0.6    3.0  3  Coatomer_WDAD  Coatomer WD associated region
      0.042   13.7   0.5       0.27   11.1   0.3    2.4  2  SH3_9          Variant SH3 domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0015       6.8      22      36 ..      15      37 ..       3      39 .. 0.66
   2 !   24.3   0.5   8.8e-09   3.9e-05       9      38 .]      56      86 ..      47      86 .. 0.90
   3 !   30.3   0.1   1.1e-10     5e-07       3      37 ..     118     153 ..     116     154 .. 0.93
   4 !   27.5   0.1   8.4e-10   3.8e-06       2      38 .]     163     200 ..     162     200 .. 0.95
   5 !   18.1   0.2   7.8e-07    0.0035       1      38 []     206     254 ..     206     254 .. 0.79
   6 !   14.0   0.0   1.6e-05      0.07       9      37 ..     275     303 ..     266     304 .. 0.79
   7 !    8.7   0.1   0.00076       3.4      18      38 .]     332     353 ..     316     353 .. 0.70

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0015
                SSE........EEEEETTSEEEE CS
        WD40 22 gaw........lasGsdDgtvri 36
                + w        la+Gs D++++i
  CCD26256.1 15 KLWsldfahglLATGSTDRKIKI 37
                3334444656599*********9 PP

  == domain 2  score: 24.3 bits;  conditional E-value: 8.8e-09
                SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  9 GH.ssvtslafspdgawlasGsdDgtvriWd 38
                 H + ++s+a+ p++++la+Gs D tv iW+
  CCD26256.1 56 VHkKAIRSVAWRPHSNLLAAGSFDSTVSIWS 86
                69888*************************5 PP

  == domain 3  score: 30.3 bits;  conditional E-value: 1.1e-10
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +l +++GH + v ++a+s+dg +la++s+D++v iW
  CCD26256.1 118 LLAIIEGHeNEVKGIAWSHDGYLLATCSRDKSVWIW 153
                 678899**999************************* PP

  == domain 4  score: 27.5 bits;  conditional E-value: 8.4e-10
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +c+ +l  H ++v ++ ++p  ++las+s+D t+r+W+
  CCD26256.1 163 ECVSVLQEHsQDVKHVVWHPTLPLLASSSYDDTIRLWK 200
                 799******888*************************6 PP

  == domain 5  score: 18.1 bits;  conditional E-value: 7.8e-07
                 TEEEEEEESS.SSEEEEEEETTSSE..........EEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgaw..........lasGsdDgtvriWd 38 
                 ++c  +l GH + v++ +f +  ++          l+s+sdD tvr+W+
  CCD26256.1 206 WECAAVLNGHeGTVWCSDFEKMLDLteetcndrlrLCSASDDSTVRVWK 254
                 678999****888****744444447777777767999**********6 PP

  == domain 6  score: 14.0 bits;  conditional E-value: 1.6e-05
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriW 37 
                  H   ++s+++ p+g   ++Gs Dgt+ i+
  CCD26256.1 275 VHaRQIYSVSWGPNGLIASTGS-DGTLAIY 303
                 68545************99***.***9887 PP

  == domain 7  score: 8.7 bits;  conditional E-value: 0.00076
                 EETTSSE.EEEEETTSEEEEEE CS
        WD40  18 fspdgaw.lasGsdDgtvriWd 38 
                  + +g++ la+G+dDg   +W+
  CCD26256.1 332 IDVNGKMlLATGGDDGCANLWS 353
                 45577773579**********5 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   4.4e-07     0.002       9      69 ..      25      89 ..      24      94 .. 0.82
   2 ?   -1.6   0.0      0.79   3.5e+03       6      14 ..     115     123 ..     113     127 .. 0.81
   3 !   13.0   0.2   2.1e-05     0.092      36      68 ..     124     156 ..     117     171 .. 0.82
   4 !    7.2   0.0    0.0014       6.2      35      69 ..     169     203 ..     162     224 .. 0.88
   5 !    7.6   0.1     0.001       4.6      30      71 ..     266     309 ..     234     334 .. 0.73
   6 ?    3.2   0.1     0.024   1.1e+02       8      53 ..     289     339 ..     283     353 .. 0.55

  Alignments for each domain:
  == domain 1  score: 18.4 bits;  conditional E-value: 4.4e-07
  ANAPC4_WD40  9 LiAlatedgellvfRlngqrvwtl....eedkedsevrsLaWkpdgklLavaysdgevrlldaes 69
                 L+A +++d ++ +  ++ +  ++l    +++ +++ +rs+aW+p  +lLa +  d++v++ + es
   CCD26256.1 25 LLATGSTDRKIKIISVKDKDHVKLvdvlDDTVHKKAIRSVAWRPHSNLLAAGSFDSTVSIWSKES 89
                 778888888888777766544444466788999***************************99886 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.79
  ANAPC4_WD40   6 tmDLiAlat 14 
                  +mDL+A++ 
   CCD26256.1 115 EMDLLAIIE 123
                  6*****986 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 2.1e-05
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldae 68 
                  ++++ev+++aW++dg lLa    d +v + +  
   CCD26256.1 124 GHENEVKGIAWSHDGYLLATCSRDKSVWIWETD 156
                  6789*********************99998763 PP

  == domain 4  score: 7.2 bits;  conditional E-value: 0.0014
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  +++++ v+++ W+p   lLa +  d ++rl + ++
   CCD26256.1 169 QEHSQDVKHVVWHPTLPLLASSSYDDTIRLWKDYD 203
                  578899***********************988776 PP

  == domain 5  score: 7.6 bits;  conditional E-value: 0.001
  ANAPC4_WD40  30 wtl...eedkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  w+      + + +++ s++W p+g l+a   sdg++ +++  + +
   CCD26256.1 266 WECeaiLPAVHARQIYSVSWGPNG-LIASTGSDGTLAIYKETENH 309
                  44455555678899*********9.899**********9765543 PP

  == domain 6  score: 3.2 bits;  conditional E-value: 0.024
  ANAPC4_WD40   8 DLiAlatedgellvfRlngqrvwtl....eedkedsevrsLaW.kpdgklL 53 
                   LiA   +dg l+++    ++ w++    e ++   ev+ ++W   +gk+L
   CCD26256.1 289 GLIASTGSDGTLAIYKETENHDWEViakrELCHGVYEVNIVKWiDVNGKML 339
                  466666667777766665555555544435566666777777744566654 PP

>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.012        52     142     190 ..      56     106 ..       4     117 .. 0.66
   2 ?    8.9   0.6   0.00015      0.67     144     206 ..     126     181 ..     115     191 .. 0.79
   3 ?    2.0   0.0     0.019        87      72     115 ..     281     324 ..     265     355 .. 0.71

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.012
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX................XX CS
  Coatomer_WDAD 142 idvkkvknVvwsddgelvalvskdtvyilsynleavee...edeeegvedaf 190
                    ++ k+++ V w +  +l+a  s d+++ +  +   +++   ed++e+ +d+ 
     CCD26256.1  56 VHKKAIRSVAWRPHSNLLAAGSFDSTVSIWSKES-FDDleiEDDDEETNDST 106
                    344579********99999997666555444433.56632344444444433 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00015
                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............XXXXXXX.XXXXXXXXXX CS
  Coatomer_WDAD 144 vkkvknVvwsddgelvalvskdtvyilsynleaveeedeeegvedafevlhelsesiksgaWv 206
                     ++vk + ws dg l+a +s+d+ + +  + e      + e++e  ++vl+e s+ +k ++W+
     CCD26256.1 126 ENEVKGIAWSHDGYLLATCSRDKSVWIWETDE------TGEEYE-CVSVLQEHSQDVKHVVWH 181
                    467****************9877666665555......244444.78999999*********7 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.019
                    XXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXX CS
  Coatomer_WDAD  72 ldfvwvssnrfavlessksvkifknfkekktksikleyqvdkif 115
                     ++ w++++ +a + s +++ i+k+ +++  + i   + +  ++
     CCD26256.1 281 YSVSWGPNGLIASTGSDGTLAIYKETENHDWEVIAKRELCHGVY 324
                    46678888888888888888888888888766666666665555 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   6.1e-05      0.27      18      43 ..     193     219 ..     191     219 .. 0.94
   2 ?   -0.8   0.0      0.31   1.4e+03      26      43 ..     305     324 ..     299     330 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.1e-05
       SH3_9  18 GDvitvieesedgW.legsltGrtGlv 43 
                 +D+i+++++++d+W + + l+G+ G v
  CCD26256.1 193 DDTIRLWKDYDDDWeCAAVLNGHEGTV 219
                 8***********************987 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.31
       SH3_9  26 e.sedgW.legsltGrtGlv 43 
                 e ++ +W + ++++ ++G++
  CCD26256.1 305 EtENHDWeVIAKRELCHGVY 324
                 51356666666689999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       442  (0.0246528); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2623.16
//
Query:       CCD26257.1  [L=686]
Description: hypothetical protein NDAI_0H00830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-08   33.2   8.2    3.5e-08   33.2   8.2    4.2  4  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
      0.003   17.4   8.5      0.003   17.4   8.5    3.7  5  Prok-RING_4    Prokaryotic RING finger family 4
  ------ inclusion threshold ------
      0.022   15.1   0.2      0.082   13.2   0.2    2.0  1  Peptidase_S76  Serine peptidase of plant viral polyprotein, P
      0.042   14.1   0.0      0.094   13.0   0.0    1.5  1  Mur_ligase_C   Mur ligase family, glutamate ligase domain
          6    7.1  13.0         47    4.3   0.0    2.9  2  Ribosomal_S25  S25 ribosomal protein


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   8.2   9.9e-12   3.5e-08       2      48 ..      76     123 ..      75     125 .. 0.94
   2 ?    2.2   0.1     0.045   1.6e+02       4      13 ..     173     182 ..     167     185 .. 0.60
   3 ?    0.5   0.5      0.15   5.4e+02       3      12 ..     204     213 ..     190     218 .. 0.69
   4 ?   -0.5   3.5      0.32   1.2e+03      32      45 ..     263     276 ..     242     278 .. 0.65

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 9.9e-12
                 GSB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH..TT-B-TTT--B-- CS
  zf-C3HC4_3   2 deeCviClerprnvvllpCgHlvlCeeCaekllk..rkkkCpiCrrpie 48 
                 d++C+iC ++   ++l pC H  +C++C+ + ++  +kk C iCr++ e
  CCD26257.1  76 DDICLICASKMTYAALSPCHHK-TCHRCSFRQRSlfEKKACLICRTENE 123
                 679*******************.*********99***********9865 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.045
                 B-TTTSSSBS CS
  zf-C3HC4_3   4 eCviClerpr 13 
                 +C++C ++++
  CCD26257.1 173 ICPVCERNNK 182
                 4555555544 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.15
                 SB-TTTSSSB CS
  zf-C3HC4_3   3 eeCviClerp 12 
                  +C iC +++
  CCD26257.1 204 CICTICVHNN 213
                 4566665554 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.32
                 HHHHTT-B-TTT-- CS
  zf-C3HC4_3  32 kllkrkkkCpiCrr 45 
                 +++++++kC+iC +
  CCD26257.1 263 HMRNKHEKCHICDK 276
                 33349999999975 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   8.5   8.5e-07     0.003       1      39 [.      79     121 ..      79     127 .. 0.83
   2 ?    2.9   0.0     0.029     1e+02      33      39 ..     174     180 ..     164     185 .. 0.79
   3 ?   -3.9   1.3       3.8   1.4e+04       1       9 [.     206     214 ..     202     216 .. 0.64
   4 ?   -3.5   0.1       2.7   9.7e+03      18      25 ..     243     250 ..     242     256 .. 0.63
   5 ?   -2.0   0.1      0.97   3.5e+03      29      38 ..     267     276 ..     262     282 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.5e-07
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdsk....dlssCPlCqrr 39 
                  C++C+++ + a+l+pC H  C++C   +    + ++C +C+++
   CCD26257.1  79 CLICASKMTYAALSPCHHKTCHRCSFRQrslfEKKACLICRTE 121
                  ************************86663444445******98 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.029
  Prok-RING_4  33 CPlCqrr 39 
                  CP+C+r+
   CCD26257.1 174 CPVCERN 180
                  ****998 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 3.8
  Prok-RING_4   1 CvlCgeqek 9  
                  C +C ++++
   CCD26257.1 206 CTICVHNNH 214
                  566665555 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 2.7
  Prok-RING_4  18 HlvCkeCf 25 
                  H +C  C 
   CCD26257.1 243 HPLCAFCS 250
                  66666664 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 0.97
  Prok-RING_4  29 dlssCPlCqr 38 
                  +++ C +C +
   CCD26257.1 267 KHEKCHICDK 276
                  6678888874 PP

>> Peptidase_S76  Serine peptidase of plant viral polyprotein, P1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   2.3e-05     0.082      30      75 ..     162     203 ..     149     226 .. 0.87

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.3e-05
  Peptidase_S76  30 vanvtvsDlakelteicveegiPiiiidkeKrkaiprVklkHvlrk 75 
                    va+  ++Dl k ++ +c ++++ i+++++ K+ +    +lkH  +k
     CCD26257.1 162 VAK-ATLDLLKYICPVCERNNKEIEDLGNAKKYNA---HLKHAHNK 203
                    455.689**************************98...78887664 PP

>> Mur_ligase_C  Mur ligase family, glutamate ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   2.6e-05     0.094      20      82 ..     421     485 ..     399     492 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.6e-05
                   T--SHHHHHHHHHHHHHHSS..SSEEEEEEEESTT.CCSCHCTHHHHHHHHCCHSSEEEEEESS- CS
  Mur_ligase_C  20 yahnpdslsaalkalreiap..dkrlilvfgpggelgertrtfhdefgrlasaladslvvlgdyp 82 
                   y     s++a+l++++e+++  ++ + l+   ++ +++++ ++h+e+ ++++a+  + ++ ++ p
    CCD26257.1 421 YDKGYLSAQALLQSYKELFKtpQSDIYLLTKNLAKTYSKDSKKHKELYAIFEAHEQRMYIQNELP 485
                   55556799***********9999******************************998888877655 PP

>> Ribosomal_S25  S25 ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2  11.3      0.11   4.1e+02       2      39 ..      10      47 ..       9      65 .. 0.83
   2 ?    4.3   0.0     0.013        47      34      84 ..     121     171 ..     118     184 .. 0.77

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.11
  Ribosomal_S25  2 ekkakkakaaaakaggkakkKKwskgkvkdklnnavlf 39
                   +kka++++a+++++ ++++kKK s+gk+k + n+    
     CCD26257.1 10 SKKAQNKSANVKTSNSNNNKKKESNGKSKSNTNRRSGN 47
                   5788888888888888999**********999987655 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.013
  Ribosomal_S25  34 nnavlfdketydkllkevpkyklitpsvvserlkingslArraLreleekg 84 
                    +n  l+  e++   +++  +ykl   + v e++ in + ++ a  +l   +
     CCD26257.1 121 ENETLIFTENVTATYEDFINYKLDQFYAVNEKFGINFTSSEVAKATLDLLK 171
                    57788889999999**********************987666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2011  (0.112165); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.73u 0.26s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 4656.97
//
Query:       CCD26258.1  [L=341]
Description: hypothetical protein NDAI_0H00840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-33  114.8   3.8    7.7e-33  114.0   3.8    1.4  1  Pex2_Pex12    Pex2 / Pex12 amino terminal region
    3.4e-08   33.7  17.1    5.5e-08   33.0  17.1    1.3  1  zf-RING_2     Ring finger domain
    1.9e-07   30.8  16.5      3e-07   30.2  16.5    1.3  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
    2.6e-05   24.0  15.9    4.6e-05   23.2  15.9    1.4  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
      4e-05   23.4  14.6    7.1e-05   22.6  14.6    1.4  1  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
    7.3e-05   22.6  17.0    0.00013   21.8  17.0    1.3  1  Prok-RING_4   Prokaryotic RING finger family 4
    8.6e-05   22.5   9.0    8.6e-05   22.5   9.0    2.0  2  zf-RING_UBOX  RING-type zinc-finger
    0.00047   20.1  12.1      0.001   19.0  12.1    1.6  1  zf-RING_5     zinc-RING finger domain
     0.0008   19.6  12.3     0.0017   18.6  12.3    1.5  1  zf-rbx1       RING-H2 zinc finger domain
     0.0074   16.4  15.6      0.013   15.6  15.6    1.4  1  zf-C3HC4_4    zinc finger of C3HC4-type, RING
  ------ inclusion threshold ------
        1.2    9.0  10.5        2.8    7.9  10.5    1.5  1  zf-RING_6     zf-RING of BARD1-type protein
         10    6.5  13.7         12    6.2  12.2    1.8  1  IBR           IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> Pex2_Pex12  Pex2 / Pex12 amino terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   3.8   5.1e-36   7.7e-33       1     221 [.      37     230 ..      37     233 .. 0.90

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 5.1e-36
  Pex2_Pex12   1 deelesllkpalryilrllagqrfpilnyfdEikllldlllelltlksgngTfgeefygLkrvssselkkrrllskrqrllsllllvlipYlkekldel 99 
                 de+++s+l ++  ++l++++gq f+ +++ +Ei l ++ll+  lt+++gn+T+gee+++L++v   ++k+++ll + ++ll++l+++l+ Y + k+++l
  CCD26258.1  37 DEQIQSILIEKTISVLKSIKGQLFS-NTHPKEIGLGVKLLYLTLTTLRGNRTLGEEYVDLIYV---NRKGTKLLKRYRKLLFILSHILGSYMVFKCYRL 131
                 89***********************.*************************************...********************************* PP

  Pex2_Pex12 100 ysarerysaealsdearnsreslkkrlkrlllklypfiealyellnlvlqllYLsgkyysllkrllgiryvrlnpadq....rrnarrpsyeylnrqll 194
                 +   ++   +++ d++   ++++k          ++f + l  +l+ ++ ++Y++g yy+l+krl+g++y+  ++ ++    +r+++++ y        
  CCD26258.1 132 F---KKITGNDELDGNS-NEDNSK----------FSFKNLLDLSLDTHMIVFYFQGAYYDLSKRLFGMKYALGHRVSSnekqFRDKSSNTYT------- 209
                 *...3333333322222.233333..........678888999******************************99999999***********....... PP

  Pex2_Pex12 195 wnalkellgllllllllsvfllkllew 221
                       ++g+++ll++l++++ k++e 
  CCD26258.1 210 ------IVGYIILLQNLAKVIPKIMER 230
                 ......***************999986 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0  17.1   3.7e-11   5.5e-08       2      44 .]     289     328 ..     288     328 .. 0.89

  Alignments for each domain:
  == domain 1  score: 33.0 bits;  conditional E-value: 3.7e-11
   zf-RING_2   2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPlCr 44 
                 +C +Cl+++ ++++    pCgH+f++ Cl++w++++ +CPlCr
  CCD26258.1 289 NCILCLNDMVDPSC-S--PCGHIFCWRCLMDWCQERAECPLCR 328
                 7********76444.4..6***********************9 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2  16.5     2e-10     3e-07       3      46 ..     288     330 ..     286     332 .. 0.95

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 2e-10
                 SB-TTTSSSBS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT--B CS
  zf-C3HC4_3   3 eeCviClerprnvvllpCgHlvlCeeCaekllkrkkkCpiCrrp 46 
                 + C++Cl+   +  + pCgH+ +C +C+ ++ +++++Cp+Cr+p
  CCD26258.1 288 RNCILCLNDMVDPSCSPCGHI-FCWRCLMDWCQERAECPLCRQP 330
                 78*******************.*********************8 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2  15.9   3.1e-08   4.6e-05       2      40 .]     290     327 ..     289     327 .. 0.97

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.1e-08
  zf-C3HC4_2   2 CpiCldmlkdpsvvtpCgHvfCqkCilrsLeekneCPlC 40 
                 C +Cl+ + dp    pCgH fC  C++ + +e  eCPlC
  CCD26258.1 290 CILCLNDMVDP-SCSPCGHIFCWRCLMDWCQERAECPLC 327
                 ***********.999************************ PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6  14.6   4.8e-08   7.1e-05       1      41 []     290     327 ..     290     327 .. 0.97

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 4.8e-08
                 -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4   1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41 
                 C++Cl+ +++p+  ++C+H fC  C+  + +  +  +CPlC
  CCD26258.1 290 CILCLNDMVDPS-CSPCGHIFCWRCLMDWCQ--ERAECPLC 327
                 ************.******************..7788**** PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8  17.0   8.4e-08   0.00013       1      39 [.     290     330 ..     290     336 .. 0.89

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 8.4e-08
  Prok-RING_4   1 CvlCgeqekkailepCgHlvCkeCfdsk..dlssCPlCqrr 39 
                  C+lC +   ++  +pCgH++C +C+ ++  + + CPlC++ 
   CCD26258.1 290 CILCLNDMVDPSCSPCGHIFCWRCLMDWcqERAECPLCRQP 330
                  ****************************64445*****985 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   9.0   5.7e-08   8.6e-05       1      39 []     290     325 ..     290     325 .. 0.82
   2 ?   -1.8   1.3       2.3   3.4e+03       1       7 [.     324     330 ..     318     336 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 5.7e-08
  zf-RING_UBOX   1 CpIClelftdPlv.lpCGHtFCreClwelskslegafkCP 39 
                   C  Cl+++ dP    pCGH+FC++Cl    ++ + +  CP
    CCD26258.1 290 CILCLNDMVDP-ScSPCGHIFCWRCL---MDWCQERAECP 325
                   889********.5469**********...56666666666 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 2.3
  zf-RING_UBOX   1 CpIClel 7  
                   Cp C+++
    CCD26258.1 324 CPLCRQP 330
                   8888875 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0  12.1   6.9e-07     0.001       5      44 .]     290     329 ..     288     329 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 6.9e-07
   zf-RING_5   5 CfeklskeekfyltsCgHifCekClkkllekeavCpiCrk 44 
                 C  +l++  ++   +CgHifC++Cl+   +++a+Cp+Cr+
  CCD26258.1 290 CILCLNDMVDPSCSPCGHIFCWRCLMDWCQERAECPLCRQ 329
                 44444444678889***********99888********97 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6  12.3   1.2e-06    0.0017      14      55 .]     290     328 ..     285     328 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 1.2e-06
     zf-rbx1  14 cieckapgdeecpvvlGeCgHaFHlhCiskWlktrkvCPlcr 55 
                 ci c ++    + + ++ CgH F   C+ +W ++r++CPlcr
  CCD26258.1 290 CILCLNDM---VDPSCSPCGHIFCWRCLMDWCQERAECPLCR 328
                 55554444...4478899***********************8 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6  15.6     9e-06     0.013       1      42 []     290     327 ..     290     327 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 9e-06
  zf-C3HC4_4   1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeqllCplC 42 
                 C  Cl+ + +P   +CGh+fC +C+  +++e ++    CplC
  CCD26258.1 290 CILCLNDMVDPSCSPCGHIFCWRCLMDWCQERAE----CPLC 327
                 889****************************955....9999 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  10.5    0.0019       2.8      10      53 ..     290     334 ..     287     337 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0019
   zf-RING_6  10 csrctdilrepvclggcehifcsncisd.cfg.sgcpvcytpawiq 53 
                 c  c + + +p c   c hifc  c+ d c   + cp+c  p   q
  CCD26258.1 290 CILCLNDMVDPSC-SPCGHIFCWRCLMDwCQErAECPLCRQPCLPQ 334
                 7788888899999.57**********995543378*****998766 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  12.2     0.008        12      40      62 .]     301     324 ..     277     327 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.008
         IBR  40 tCskCgfefCfnCkkew.HeglsC 62 
                 +Cs Cg+ fC++C+ +w  e ++C
  CCD26258.1 301 SCSPCGHIFCWRCLMDWcQERAEC 324
                 4**************995444455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.44
# Mc/sec: 2322.48
//
Query:       CCD26259.1  [L=786]
Description: hypothetical protein NDAI_0H00850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.1e-33  113.8   0.2    1.6e-15   57.5   0.1    3.3  4  Ank_2       Ankyrin repeats (3 copies)
    1.1e-25   90.3   5.6    1.1e-25   90.3   5.6    3.1  4  DHHC        DHHC palmitoyltransferase
    2.7e-25   88.4   0.1    2.3e-07   31.2   0.2    4.7  5  Ank_4       Ankyrin repeats (many copies)
    4.2e-25   87.5   0.9    1.1e-08   35.1   0.4    4.4  4  Ank_5       Ankyrin repeats (many copies)
    1.4e-24   85.3   2.4    1.7e-05   25.0   0.0    7.0  8  Ank         Ankyrin repeat
    3.8e-24   82.1   0.8    0.00015   21.9   0.0    7.0  7  Ank_3       Ankyrin repeat
     0.0059   16.6   0.0       0.97    9.5   0.0    2.6  2  VCH_CASS14  Integron cassette protein VCH_CASS1 chain


Domain annotation for each model (and alignments):
>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.1   6.2e-19   1.6e-15       2      81 ..      75     174 ..      74     176 .. 0.82
   2 !   26.9   0.0   2.1e-09   5.4e-06      26      67 ..     146     193 ..     143     200 .. 0.78
   3 !   43.0   0.0     2e-14   5.1e-11       1      80 [.     183     277 ..     183     280 .. 0.76
   4 ?   -3.5   0.0       6.6   1.7e+04      40      48 ..     457     465 ..     452     483 .. 0.56

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 6.2e-19
       Ank_2   2 hlAakngnlelvklLl.eg..........adpnk..ngktaLhyAakngnleivklLleh...ad....ndgrtpLhyAarsghleivklLlekgadin 80 
                 h+A++ g+l +vk+L+ +g          + +n+  +  t Lh+A +n+ l +vk+L+++   ++    n + tpLh+Aar+g+  iv++Ll++gad+ 
  CCD26259.1  75 HVACQTGDLTTVKQLIsSGvidikhdyddVAVNDenERTTGLHWASINNRLSVVKYLISQgadVNattgNLNATPLHWAARYGYVYIVDYLLQHGADPS 173
                 99*****99*******86686766444332233256889*******************988663354678899************************97 PP

       Ank_2  81 l 81 
                 l
  CCD26259.1 174 L 174
                 5 PP

  == domain 2  score: 26.9 bits;  conditional E-value: 2.1e-09
       Ank_2  26 gktaLhyAakngnleivklLleh......adndgrtpLhyAarsghle 67 
                 + t+Lh+Aa++g++ iv +Ll+h       d +g + Lh+A+ s+++ 
  CCD26259.1 146 NATPLHWAARYGYVYIVDYLLQHgadpslCDLQGFNLLHLAINSSNIM 193
                 479*********9999*****99956555558899******9766544 PP

  == domain 3  score: 43.0 bits;  conditional E-value: 2e-14
       Ank_2   1 LhlAakngnle.lvklLl.....egadpn.k..ngktaLhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekgadin 80 
                 LhlA+++ n   +v  L      +  d++ +   g+t+L +Aa +g+   v +Ll++      +d+ g tpLh+A  +g++ ++k+L+  gad+ 
  CCD26259.1 183 LHLAINSSNIMlVVYVLFfivskNILDVDcQdpHGRTPLLWAAYQGDSLSVAILLKFgastkiTDEGGFTPLHWATVKGQPHVLKYLIRDGADFF 277
                 7889997545415555545654333444452579************8777*****977777777799*********************8899975 PP

  == domain 4  score: -3.5 bits;  conditional E-value: 6.6
       Ank_2  40 eivklLleh 48 
                 +i+k Ll+ 
  CCD26259.1 457 NIIKELLDV 465
                 455555542 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       1.5   3.7e+03      75     116 ..     164     202 ..     151     209 .. 0.44
   2 ?   -2.0   0.9       1.4   3.6e+03     103     110 ..     338     345 ..     313     372 .. 0.42
   3 ?   -5.5   7.2         7   1.8e+04      54     118 ..     351     410 ..     327     441 .. 0.52
   4 !   90.3   5.6   4.3e-29   1.1e-25       2     132 ..     468     608 ..     467     610 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.5
        DHHC  75 klveeekkseflavtllkkllsilllvlsllfllllgllllf 116
                 +l+++    +   ++ ++    + l++ s  ++l++ +l+++
  CCD26259.1 164 YLLQHGADPSLCDLQGFN---LLHLAINSSNIMLVVYVLFFI 202
                 444444444444444443...222333333333333333333 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 1.4
        DHHC 103 sllfllll 110
                 s++fll+ 
  CCD26259.1 338 STIFLLWS 345
                 22222111 PP

  == domain 3  score: -5.5 bits;  conditional E-value: 7
        DHHC  54 fllylllllilalvlllialvklveeekkseflavtllkk..llsilllvlsllfllllgllllfhl 118
                 f l+++lll l+++ +l  +v    ++++ ++       k  l s ++  + +  ++ll+++ +fh+
  CCD26259.1 351 FALIVSLLLGLVTIKALKKFVLPSYDDDTIFH-------KsiLKSPFVSGIFFGSVVLLTVVWFFHI 410
                 22333333333333333333222222222222.......2332233344444444445555555554 PP

  == domain 4  score: 90.3 bits;  conditional E-value: 4.3e-29
        DHHC   2 ekelkfCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkk....... 93 
                 +++++fC +  ++kp rsk+++  n  v+rfDH+Cpw+ n +G +N+k+F+ f+l +   +i ++ l+++++ +l ++ + +e++ ++ll +       
  CCD26259.1 468 FDSKNFCLESWTRKPLRSKYSHLNNALVARFDHFCPWIYNDVGLKNHKNFIGFILLVEAGIITFASLCFEYFDELKDHFEVNENTSCFLLGDndlcygf 566
                 6789************************************************************************************9999******* PP

        DHHC  94 ...llsilllvlsllfllllgllllfhlylilrnlTtieamk 132
                     l++l+l++sl+  ++l++l+ +++++il ++T+ e+ k
  CCD26259.1 567 tydRLTFLILCWSLIQSIWLIILISIQVFQILYGVTNSEFNK 608
                 ***999*******************************99876 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.49   1.3e+03       5      25 ..      74      95 ..      72     103 .. 0.82
   2 !   30.5   0.0   1.5e-10   3.8e-07       5      46 ..     116     157 ..     111     158 .. 0.86
   3 !   31.2   0.2   8.9e-11   2.3e-07       3      47 ..     148     191 ..     146     199 .. 0.91
   4 !   30.1   0.0     2e-10   5.2e-07       1      55 []     217     270 ..     209     270 .. 0.96
   5 ?   -3.4   0.0       6.4   1.6e+04      33      45 ..     375     387 ..     372     391 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.49
       Ank_4  5 LhyaaisgrlelvrlLlekg.a 25
                +h a++ g+l +v+ L+++g +
  CCD26259.1 74 YHVACQTGDLTTVKQLISSGvI 95
                6999999999999999998844 PP

  == domain 2  score: 30.5 bits;  conditional E-value: 1.5e-10
       Ank_4   5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrg 46 
                 Lh+a i +rl +v++L+++gad+na++ +   t+lh Aa+ g
  CCD26259.1 116 LHWASINNRLSVVKYLISQGADVNATTGNLNATPLHWAARYG 157
                 9*************************444455*******877 PP

  == domain 3  score: 31.2 bits;  conditional E-value: 8.9e-11
       Ank_4   3 taLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgn 47 
                 t+Lh+aa +g + +v++Ll++gad+  + + +G+++lh A+  +n
  CCD26259.1 148 TPLHWAARYGYVYIVDYLLQHGADPSLC-DLQGFNLLHLAINSSN 191
                 89*************************9.***********96665 PP

  == domain 4  score: 30.1 bits;  conditional E-value: 2e-10
       Ank_4   1 eltaLhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55 
                 ++t+L +aa++g+  +v++Ll +ga+   + ++ G+t+lh A  +g++++lk+L+
  CCD26259.1 217 GRTPLLWAAYQGDSLSVAILLKFGASTKIT-DEGGFTPLHWATVKGQPHVLKYLI 270
                 589***********************6666.***********************8 PP

  == domain 5  score: -3.4 bits;  conditional E-value: 6.4
       Ank_4  33 rsGetalhiAakr 45 
                  +++t +h+ +++
  CCD26259.1 375 YDDDTIFHKSILK 387
                 6789****99876 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.2   1.3e-09   3.4e-06       2      48 ..      99     144 ..      99     147 .. 0.90
   2 !   35.1   0.4   4.4e-12   1.1e-08       1      56 []     131     186 ..     131     186 .. 0.96
   3 !   27.2   0.0   1.4e-09   3.6e-06       8      54 ..     209     255 ..     207     257 .. 0.95
   4 !   13.6   0.0   2.4e-05     0.062       1      49 [.     236     283 ..     236     284 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 1.3e-09
       Ank_5   2 lehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsr 48 
                 +++++++vn+++++  t Lh+A+ +++++vv++L+  gad n+t+++
  CCD26259.1  99 HDYDDVAVNDENERT-TGLHWASINNRLSVVKYLISQGADVNATTGN 144
                 577889999*98776.***************************9975 PP

  == domain 2  score: 35.1 bits;  conditional E-value: 4.4e-12
       Ank_5   1 Llehgpadvnrldgggn.tpLhvAakygaadvvrlLlargadlnltdsrGltaldlA 56 
                 L++ g advn++ g+ n tpLh+Aa+yg+  +v +Ll +gad+ l+d +G ++l+lA
  CCD26259.1 131 LISQG-ADVNATTGNLNaTPLHWAARYGYVYIVDYLLQHGADPSLCDLQGFNLLHLA 186
                 67888.9********99***********************************99998 PP

  == domain 3  score: 27.2 bits;  conditional E-value: 1.4e-09
       Ank_5   8 dvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrGltald 54 
                 dv+++d++g tpL +Aa++g +  v +Ll++ga++++td+ G t+l+
  CCD26259.1 209 DVDCQDPHGRTPLLWAAYQGDSLSVAILLKFGASTKITDEGGFTPLH 255
                 8999*****************************************97 PP

  == domain 4  score: 13.6 bits;  conditional E-value: 2.4e-05
       Ank_5   1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlargadlnltdsrG 49 
                 Ll+ g a++  +d+gg+tpLh+A  +g + v+++L+  gad + ++++G
  CCD26259.1 236 LLKFG-ASTKITDEGGFTPLHWATVKGQPHVLKYLIRDGADFFKKTNDG 283
                 78888.99999*************************9898888887777 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         2   5.1e+03       7      24 ..      75      93 ..      75      99 .. 0.75
   2 !   20.3   0.0   2.1e-07   0.00054       6      31 ..     116     142 ..     113     142 .. 0.89
   3 !   25.0   0.0   6.8e-09   1.7e-05       4      31 ..     148     176 ..     147     177 .. 0.95
   4 ?    2.5   0.0     0.089   2.3e+02       2      12 ..     179     189 ..     178     211 .. 0.71
   5 !    9.5   0.0   0.00053       1.4       1      31 [.     216     247 ..     216     248 .. 0.86
   6 !   20.1   0.0   2.4e-07   0.00061       2      26 ..     250     275 ..     249     281 .. 0.88
   7 ?   -2.8   0.2       4.3   1.1e+04      16      24 ..     353     360 ..     346     364 .. 0.82
   8 ?   -1.9   0.0       2.2   5.8e+03      16      23 ..     457     464 ..     445     469 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 2
                HHHHHHTTHHHHHHHH.TT CS
         Ank  7 HlAatngkkriiklLL.hG 24
                H+A++ g++  +k L+ +G
  CCD26259.1 75 HVACQTGDLTTVKQLIsSG 93
                9999888877888888666 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 2.1e-07
                 HHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   6 LHlAatngkkriiklLL.hGAnlnald 31 
                 LH+A+ n+ ++++k+L+ +GA++na++
  CCD26259.1 116 LHWASINNRLSVVKYLIsQGADVNATT 142
                 9**996666********99******86 PP

  == domain 3  score: 25.0 bits;  conditional E-value: 6.8e-09
                 BHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   4 TPLHlAatngkkriiklLL.hGAnlnald 31 
                 TPLH+Aa++g + i+ +LL hGA++ + d
  CCD26259.1 148 TPLHWAARYGYVYIVDYLLqHGADPSLCD 176
                 9******************99****9877 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.089
                 SBBHHHHHHHH CS
         Ank   2 GnTPLHlAatn 12 
                 G+  LHlA++ 
  CCD26259.1 179 GFNLLHLAINS 189
                 8999***9932 PP

  == domain 5  score: 9.5 bits;  conditional E-value: 0.00053
                 TSBBHHHHHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank   1 dGnTPLHlAatngkkriiklLL.hGAnlnald 31 
                 +G+TPL +Aa+ g+   +  LL  GA+  ++d
  CCD26259.1 216 HGRTPLLWAAYQGDSLSVAILLkFGASTKITD 247
                 69********9999999999996799876665 PP

  == domain 6  score: 20.1 bits;  conditional E-value: 2.4e-07
                 SBBHHHHHHHHTTHHHHHHHH.TTTS CS
         Ank   2 GnTPLHlAatngkkriiklLL.hGAn 26 
                 G+TPLH+A   g+++++k+L+ +GA+
  CCD26259.1 250 GFTPLHWATVKGQPHVLKYLIrDGAD 275
                 9******988899********99**9 PP

  == domain 7  score: -2.8 bits;  conditional E-value: 4.3
                 HHHHHHHTT CS
         Ank  16 riiklLLhG 24 
                  i++lLL G
  CCD26259.1 353 LIVSLLL-G 360
                 599**99.6 PP

  == domain 8  score: -1.9 bits;  conditional E-value: 2.2
                 HHHHHHHT CS
         Ank  16 riiklLLh 23 
                 +iik+LL+
  CCD26259.1 457 NIIKELLD 464
                 5*****94 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.079     2e+02       7      28 ..      75      96 ..      74      99 .. 0.84
   2 !   19.1   0.0   4.8e-07    0.0012       6      31 .]     116     140 ..     114     140 .. 0.94
   3 !   21.9   0.0   5.8e-08   0.00015       3      30 ..     147     173 ..     145     174 .. 0.92
   4 ?    3.4   0.1     0.062   1.6e+02       2      22 ..     179     199 ..     178     212 .. 0.70
   5 !    8.5   0.0    0.0013       3.4       1      27 [.     216     241 ..     216     244 .. 0.84
   6 !   17.2   0.0   2.1e-06    0.0053       2      29 ..     250     276 ..     249     277 .. 0.95
   7 ?   -3.2   0.0         7   1.8e+04      16      24 ..     457     465 ..     452     469 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.079
       Ank_3  7 hlAarsgnleivkfLlenkgad 28
                h+A+  g+l+ vk L+    +d
  CCD26259.1 75 HVACQTGDLTTVKQLISSGVID 96
                99*******99*****965555 PP

  == domain 2  score: 19.1 bits;  conditional E-value: 4.8e-07
       Ank_3   6 LhlAarsgnleivkfLlenkgadvna 31 
                 Lh+A  +++l++vk+L+   gadvna
  CCD26259.1 116 LHWASINNRLSVVKYLIS-QGADVNA 140
                 9*****************.9****96 PP

  == domain 3  score: 21.9 bits;  conditional E-value: 5.8e-08
       Ank_3   3 etpLhlAarsgnleivkfLlenkgadvn 30 
                  tpLh+Aar+g + iv++Ll+ +gad+ 
  CCD26259.1 147 ATPLHWAARYGYVYIVDYLLQ-HGADPS 173
                 7************88******.9***85 PP

  == domain 4  score: 3.4 bits;  conditional E-value: 0.062
       Ank_3   2 GetpLhlAarsgnleivkfLl 22 
                 G ++LhlA+ s n+ +v + l
  CCD26259.1 179 GFNLLHLAINSSNIMLVVYVL 199
                 7789*********97443333 PP

  == domain 5  score: 8.5 bits;  conditional E-value: 0.0013
       Ank_3   1 nGetpLhlAarsgnleivkfLlenkga 27 
                 +G+tpL +Aa +g+   v  Ll+ +ga
  CCD26259.1 216 HGRTPLLWAAYQGDSLSVAILLK-FGA 241
                 79************954888877.776 PP

  == domain 6  score: 17.2 bits;  conditional E-value: 2.1e-06
       Ank_3   2 GetpLhlAarsgnleivkfLlenkgadv 29 
                 G tpLh+A   g + ++k+L++  gad+
  CCD26259.1 250 GFTPLHWATVKGQPHVLKYLIR-DGADF 276
                 88********************.9*995 PP

  == domain 7  score: -3.2 bits;  conditional E-value: 7
       Ank_3  16 eivkfLlen 24 
                 +i+k Ll+ 
  CCD26259.1 457 NIIKELLDV 465
                 489999994 PP

>> VCH_CASS14  Integron cassette protein VCH_CASS1 chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00038      0.97      24      79 ..      88     145 ..      73     155 .. 0.75
   2 ?    4.0   0.0     0.019        50      42      66 ..     245     269 ..     229     276 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00038
  VCH_CASS14  24 lalagavl.akkedekvevleddgdlkrvlWatlgGkRyvfsYntkag.tielreGsa 79 
                   ++++v+  k + + v+v ++++ ++ + Wa +  +  v +Y  + g  ++   G +
  CCD26259.1  88 QLISSGVIdIKHDYDDVAVNDENERTTGLHWASINNRLSVVKYLISQGaDVNATTGNL 145
                 4456666527888**********************99999999876541455555555 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.019
  VCH_CASS14  42 leddgdlkrvlWatlgGkRyvfsYn 66 
                 + d+g+ +++ Wat+ G+  v +Y 
  CCD26259.1 245 ITDEGGFTPLHWATVKGQPHVLKYL 269
                 569999************9999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       901  (0.0502538); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 5523.16
//
Query:       CCD26260.1  [L=416]
Description: hypothetical protein NDAI_0H00860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-24   84.9   0.0      1e-23   83.7   0.0    1.6  1  XPG_N       XPG N-terminal domain
    1.3e-20   73.5   0.0    4.4e-20   71.8   0.0    2.0  1  XPG_I       XPG I-region
     0.0021   18.6   0.0     0.0073   16.9   0.0    2.0  1  5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
  ------ inclusion threshold ------
      0.052   13.6   0.0        4.3    7.5   0.0    2.8  2  HHH_2       Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   2.3e-27     1e-23       1      99 [.       1      97 [.       1      99 [. 0.96

  Alignments for each domain:
  == domain 1  score: 83.7 bits;  conditional E-value: 2.3e-27
                X--TTHHHHHHHH-GEEEEEGGGGTTEEEEEEHHHHHHHHHHHSE.ETTEE-BS-HHHHHHHHHHHHHHHTTEEEEEEE--S--GGGHHHHHHHHHHHH CS
       XPG_N  1 MGikgLlkllkevaairsvsiealegkklaiDaslwlyrfliavreqlgnalentshlmglfsrllrlldfgikPifVFdgkapdlkkeelekrserrq 99
                MGi gLl++lk ++  r++ + ++ g +l+iD+++wl++++++++++l +   ++++l++++++++++++++i+P +VFdg+++++k+  +  r  +r+
  CCD26260.1  1 MGIAGLLPQLKTIQ--RPMTLSRYAGMTLGIDGYAWLHKAACSCAYELVMGRPTEKYLQYFIRKFKMMKQLNIQPFVVFDGGPIEVKRAIEMDRLRKRE 97
                **************..************************************************************************98888877776 PP

>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   9.9e-24   4.4e-20       3      94 .]     140     228 ..     138     228 .. 0.81

  Alignments for each domain:
  == domain 1  score: 71.8 bits;  conditional E-value: 9.9e-24
                 HT--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT...EEECEEEEEEHHHHHHH.HT--HHHHHHHHHHHCET CS
       XPG_I   3 mgipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkk.kekekkkvevidlekvlke.lgltreqlidlaillgcD 94 
                   ipyv+Ap+EA++q++yL+k g++d++iseDsD+l+FG+++++++l+  +s+++ +    ++ + i++++ +    +lt +q++ l++l+gcD
  CCD26260.1 140 NSIPYVIAPFEADSQMVYLEKIGMIDGIISEDSDILIFGGNRLITKLN--DSGDClQ---ISSADFIKVQTEKFPiGELTADQIRMLVCLSGCD 228
                 579********************************************9..7777723...333444444222222135***************9 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.6e-06    0.0073      17      57 ..     227     267 ..     213     292 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.6e-06
  5_3_exonuc  17 sDnipGvpgiGektAakLlkeygsleeilenldelkekklk 57 
                  D   G+ +iG  tA+kL+k++ ++++i++ l+el+++k k
  CCD26260.1 227 CDYTNGIWKIGLITAMKLVKQFSDMNSIISYLKELNNDKKK 267
                 47778*************************99998875533 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.027   1.2e+02      31      59 ..     113     141 ..     112     146 .. 0.83
   2 ?    7.5   0.0   0.00096       4.3       7      30 ..     232     255 ..     229     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.027
       HHH_2  31 kasleeLlevddiGeeiAqsivefFenek 59 
                 +a +e  ++  d+ +e+A+ i+++ ++++
  CCD26260.1 113 HAAMERFQKSVDVTTEMAKCIIDYCKDNS 141
                 57788888889*************99876 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.00096
       HHH_2   7 GIrhVGektAklLakrFksldaLk 30 
                 GI ++G  tA +L+k+F ++  + 
  CCD26260.1 232 GIWKIGLITAMKLVKQFSDMNSII 255
                 999*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1038  (0.057895); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 3112.29
//
Query:       CCD26261.1  [L=314]
Description: hypothetical protein NDAI_0H00870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   18.1   0.0     0.0047   17.1   0.0    1.5  1  Fasciclin  Fasciclin domain


Domain annotation for each model (and alignments):
>> Fasciclin  Fasciclin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.6e-07    0.0047      14     126 ..     168     307 ..     154     309 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.6e-07
                 TCCCCCTCSSSSEEEEEE-HHHH..............CCCHHHHHHHHHT...CHHHHHHHHHTTEEESSS-HHHHHHH...HEE..EECCTTSSEEEE CS
   Fasciclin  14 glaeeLnkkdgglTvFaPtneAf..............aklppellaklln...dkkklkeiLkyHvvpetvsssalkka...set..latllegaklrv 90 
                 +  ++L+++++ l ++aPtn+A+              +kl+ e+ ++l      ++  +++++ H+v+     s++ ++     +  l++ ++g+++ +
  CCD26261.1 168 ETYTKLSDSNQDLIIIAPTNNAIvnlslkpwqfprdiSKLEDEKASELDIdlaIDENISQFVRSHIVAYDDNRSNILETpkkG-EvlLKS-VNGNEILL 264
                 55567777888999*********88888888888887777777777775477799*************966555555553431.244677.****9999 PP

                 EEE...GGTTEEEETT....EEEEEEEEEEESSEEEEEESS-T CS
   Fasciclin  91 nie...kgngtvtvng....karvvrsdieatngvihvidkvL 126
                 +++   + +++ ++ +      + v++ i+++ngvi +id+ L
  CCD26261.1 265 KRNevgSLENDFCIAStrdnIYHPVERIITSENGVILIIDSCL 307
                 99988766667777777555344446889***********998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       616  (0.0343577); expected 358.6 (0.02)
Passed bias filter:                      412  (0.0229795); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2315.72
//
Query:       CCD26262.1  [L=564]
Description: hypothetical protein NDAI_0H00880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-14   54.2  17.1    8.3e-14   51.7  17.1    2.0  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7  17.1   4.6e-18   8.3e-14       9     246 ..     106     382 ..      97     464 .. 0.65

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 4.6e-18
                 EGEEECET...TSCGG...SHHHHHHHHHHHT-SEEEEEEE...C......TGGTTSSTTTGCTH.....HHHHHHHHHHHHHHHTT-EEEEEEESS.. CS
   Cellulase   9 nlkglsts...wgnpy...ttkalidevkdagfntvRlpvs...w......gelvenapdykvde.....nslerveevvkyakenglyvildiHse.. 85 
                 ++ g++ts    gn++    t++ ++++ d+gfn+vR+p++   w      + ++ ++++y vd+      +l+ +++++++a++ gl+v +d+H    
  CCD26262.1 106 QVLGYNTSkslLGNHFetwITEDDFKQISDEGFNLVRIPIGywaWkvnhttDLYL-KNSTY-VDPyvgegLQLKYLDKALNWADKYGLKVWIDLHGApg 202
                 566778887776666677799********************75537544433333.45555.44455557899***********************844 PP

                 .........TTTCSSSSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHHHHHHHHH..HHHHHTTS...SEEEE CS
   Cellulase  86 .........egwltkadgnssedtaeeffkklwtqiAerykkndevvifelmNEPhgnntgaewtseeadevkayaeeaik..aIRavgpn...rliiv 170
                          e+ l  + g  ++ +++    ++w+++ + y + ++v++fe+mNEP +++ +        +++++++ ea++   + + ++n   ++ +v
  CCD26262.1 203 sqngfdnsgERILYGDIGWLNNIATKTLTLSIWAELFKDYLNRSPVIGFEIMNEPLSSKID-------INDITQAYYEAFDsfKVQERNQNstaNTTFV 294
                 44333333322233333333333356667779*************************6554.......5899999999988334666677677855555 PP

                 ECHH......HHTBHHHHHCTSG.......SS..SSTTEEEEEEEETTTHHHTGCGSHSCTHHHHHHHHHHHHHHHHHHTTSEEEEEEEES CS
   Cellulase 171 egns......wsgnldgavlndP.......nd..sqdnliysvHfYgpsdfaqtefgkdltdktnlaqrledaakylvekgipviigEfGg 246
                           w+ + +   +n         n   s+++++++ H Y+    +q ++  + ++  n+ ++ +++ + l  +g  +iigE+ g
  CCD26262.1 295 IHDAfepinyWNLQFNPQYANVSnqffnltNItySSSQIMVDHHHYEVFTDSQLAE-TQYERLLNIINYGNSINEELSYHG--AIIGEWSG 382
                 554456777755533333333221133332225589***********444344333.222333333333333333333333..56666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      298  (0.0166211); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.22s 00:00:00.77 Elapsed: 00:00:00.40
# Mc/sec: 4232.48
//
Query:       CCD26263.1  [L=141]
Description: hypothetical protein NDAI_0H00890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.6e-05   22.7   3.3    0.00013   22.1   3.3    1.4  1  Apc13p    Apc13p protein


Domain annotation for each model (and alignments):
>> Apc13p  Apc13p protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   3.3   7.3e-09   0.00013       1      55 [.       8      60 ..       8     106 .. 0.67

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 7.3e-09
      Apc13p  1 mDsefqyvhldashhailaeewnkdr.Lppddvavplekldpvrteeeedvvpdde 55
                +Ds+fqy hl  sh   l++ewn+d  L+ d  +       p +  e+++ +   +
  CCD26263.1  8 RDSYFQYQHLTFSHY-VLYNEWNQDEfLALDAQELDDSTQLPAN--EQDGGANTTN 60
                7*************9.********75377887666533332333..4444433332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1030.83
//
Query:       CCD26264.1  [L=808]
Description: hypothetical protein NDAI_0H00900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-49  166.3   0.1    1.2e-46  158.9   0.0    2.6  2  AAA_2            AAA domain (Cdc48 subfamily)
    1.6e-35  121.2   0.8    1.6e-35  121.2   0.8    2.9  2  AAA_lid_9        AAA lid domain
    1.6e-25   89.0   0.1    5.5e-25   87.2   0.1    2.0  1  ClpB_D2-small    C-terminal, D2-small domain, of ClpB protein
      4e-21   75.8   0.2    4.4e-11   43.3   0.0    2.6  2  AAA              ATPase family associated with various cellul
    5.4e-14   52.4   0.2    8.1e-10   38.8   0.0    3.5  2  AAA_5            AAA domain (dynein-related subfamily)
    1.4e-11   45.1   2.0    0.00045   20.6   0.3    4.4  3  AAA_16           AAA ATPase domain
    4.8e-07   30.1   0.4      0.028   14.7   0.1    3.7  2  AAA_22           AAA domain
    7.8e-07   29.0   0.1     0.0089   15.8   0.0    3.1  3  IstB_IS21        IstB-like ATP binding protein
    9.6e-07   28.4   0.1     0.0005   19.5   0.0    3.8  3  TniB             Bacterial TniB protein
    1.5e-06   28.0   0.1    5.8e-05   22.9   0.0    2.5  2  Sigma54_activat  Sigma-54 interaction domain
    8.2e-06   25.9   0.4      0.018   15.0   0.0    2.9  2  AAA_14           AAA domain
    1.2e-05   25.4   8.7      0.067   13.1   0.1    4.6  4  ATPase_2         ATPase domain predominantly from Archaea
    5.5e-05   22.8   0.0       0.08   12.4   0.0    2.9  3  AAA_7            P-loop containing dynein motor region
    8.9e-05   22.5   0.0      0.088   12.7   0.0    2.5  2  NACHT            NACHT domain
     0.0001   22.3   0.8       0.04   13.8   0.0    3.3  3  RsgA_GTPase      RsgA GTPase
     0.0002   21.9   2.5       0.17   12.4   0.0    3.4  3  ABC_tran         ABC transporter
    0.00022   20.9   0.0       0.14   11.9   0.0    2.6  2  AAA_29           P-loop containing region of AAA domain
      0.001   19.0   0.0          2    8.4   0.0    2.8  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0012   18.6   0.0       0.82    9.4   0.0    3.0  3  PduV-EutP        Ethanolamine utilisation - propanediol utili
     0.0012   18.1   0.0      0.064   12.5   0.0    3.1  3  Zeta_toxin       Zeta toxin
     0.0014   18.9   0.0          1    9.6   0.0    2.8  2  AAA_28           AAA domain
     0.0014   17.8   0.8       0.57    9.3   0.3    3.4  2  DUF815           Protein of unknown function (DUF815)
     0.0016   18.3   5.2       0.82    9.4   0.0    3.9  4  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0017   18.1   0.0        1.5    8.5   0.0    3.1  2  AAA_30           AAA domain
     0.0018   18.7   0.0        3.1    8.2   0.0    2.9  2  RNA_helicase     RNA helicase
      0.003   18.1   2.5        2.5    8.7   0.0    3.3  2  AAA_18           AAA domain
     0.0036   17.0   0.0        2.2    7.9   0.0    2.6  2  AAA_24           AAA domain
     0.0038   17.4   0.1        1.2    9.4   0.0    2.7  2  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.004   16.2   0.1       0.44    9.5   0.0    2.9  3  AAA_6            Hydrolytic ATP binding site of dynein motor 
     0.0078   15.8   0.0       0.88    9.1   0.0    2.9  2  AAA_25           AAA domain
     0.0094   15.3   0.1        1.1    8.6   0.0    2.8  2  Mg_chelatase     Magnesium chelatase, subunit ChlI
     0.0096   15.6   0.0        1.7    8.2   0.0    2.8  2  SRP54            SRP54-type protein, GTPase domain
  ------ inclusion threshold ------
       0.01   15.7   0.3        2.6    7.8   0.0    3.2  3  Bac_DnaA         Bacterial dnaA  protein
      0.013   15.0   0.0       0.47    9.9   0.0    2.5  2  PhoH             PhoH-like protein
      0.026   14.5   0.3        2.6    8.0   0.0    3.5  3  ResIII           Type III restriction enzyme, res subunit
      0.035   14.5   3.0         11    6.3   0.3    3.9  2  AAA_19           AAA domain
       0.04   14.0   1.0        2.7    8.1   0.0    3.8  3  MMR_HSR1         50S ribosome-binding GTPase
      0.093   12.9   0.0         11    6.1   0.0    2.7  2  AAA_33           AAA domain
        0.1   12.9   1.5       0.56   10.6   0.1    3.0  1  NADH-UOR_E       putative NADH-ubiquinone oxidoreductase chai
       0.18   11.7   0.3        3.3    7.6   0.0    2.9  2  AAA_3            ATPase family associated with various cellul
        1.2    9.6   4.0        1.5    9.3   0.1    2.8  2  DUF4094          Domain of unknown function (DUF4094)
        1.7    9.3   5.3        5.8    7.6   4.6    2.3  1  YabA             Initiation control protein YabA
        2.4    8.6  26.2         14    6.1   0.8    4.1  2  AAA_23           AAA domain


Domain annotation for each model (and alignments):
>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.067        28       6      77 ..     136     214 ..     131     225 .. 0.72
   2 !  158.9   0.0     3e-49   1.2e-46       1     171 []     529     697 ..     529     697 .. 0.97

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.067
                 EEEE--TTSSHHHHHHHHHHHTT-..........-EEEEEGGG-------THHHHHHHHH.TTT-HHHHTTSEEEEETG CS
       AAA_2   6 illlgptgvGktelakalaellfv......kkekkliradaselleeeevehlvsrliga.ppgyvgaeegGivllDEi 77 
                   l+g  gvGkt l + la+ +         k+k+li++d  +l+ + + +   ++ + +  + + +++ + i+++DE+
  CCD26264.1 136 PVLIGRAGVGKTSLIDGLAQRIVSgevpesLKDKQLITLDLGSLIAGAKYRGEFEERLKSvLDEIDKRQGEVIIFIDEV 214
                 5688999******999999988657778877778888888888888666555554444430344444444459999998 PP

  == domain 2  score: 158.9 bits;  conditional E-value: 3e-49
                 -----EEEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS............EEEEETGGG-------- CS
       AAA_2   1 rpiisilllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG............ivllDEidKihpkessg 87 
                 rpi+s+++lgptg+Gktel+kala +   ++e+++ir+d+se++e    +h+vsrligappgyv  e gG            ++l+DE +K+hp     
  CCD26264.1 529 RPIASFMFLGPTGTGKTELTKALAVIFI-DDESNVIRFDMSEFQE----KHTVSRLIGAPPGYVLSESGGqlteavrrkpyaVILFDEFEKAHP----- 617
                 699*********************9997.****************....*********************************************..... PP

                 -----HHHHHHHHHHHH--EE-------EE-TT-EEEEEE--TTHHHHTTTS-S..TTTTSGGG--HHHHHHTT--HHHHTT--EE CS
       AAA_2  88 advSregVqrdLLqileggtltdkqgrkvdtknilfImtgafgsskisdesrsk..eeeeekkkeeveeelkkglipEllgRlpei 171
                       +V ++LLq+l++g+ltd+ g++vd++n++++mt+++g++   ++++++   + ++ +k++v e++k+   pE+++R+++i
  CCD26264.1 618 ------DVSKLLLQVLDEGKLTDSLGHHVDFRNTIIVMTSNIGQDILLEDTNIGedGKIDSPTKQKVIEAMKRSYPPEFINRIDDI 697
                 ......*******************************************999987778888999*******************976 PP

>> AAA_lid_9  AAA lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.8   3.7e-38   1.6e-35       1     101 [.     274     374 ..     274     381 .. 0.93
   2 ?    2.8   1.9      0.27   1.1e+02      64     101 ..     397     434 ..     385     460 .. 0.78

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 3.7e-38
   AAA_lid_9   1 seeetieiLrglkekyekhHgvkisdealeaavklSkrYisdrflPdkAIDllDeaaarvrlkkeskpeeleklekelaklekekealekeeekekaer 99 
                 s+++ti+iLrglke+ye hHgv+i+d al++a+ lS+rY++drflPdkAIDl+Dea+a +rl++eskp+e++kl++ + k++ e e+l+ke++  + er
  CCD26264.1 274 SVSDTISILRGLKERYEVHHGVRITDTALVSAAVLSNRYLTDRFLPDKAIDLVDEACAVLRLQHESKPDEIQKLDRSIMKIQIELESLKKETDPVSVER 372
                 5789***************************************************************************************99555544 PP

   AAA_lid_9 100 lk 101
                  +
  CCD26264.1 373 RE 374
                 43 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.27
   AAA_lid_9  64 keskpeeleklekelaklekekealekeeekekaerlk 101
                 ++++ e++++++++l++ + + e+ ++e +++ka++l+
  CCD26264.1 397 EKKEIESIKNAKADLEQARIQLEKCQREGDYTKASELR 434
                 23344668888888888888888888888888888775 PP

>> ClpB_D2-small  C-terminal, D2-small domain, of ClpB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.1   1.3e-27   5.5e-25       1      81 []     703     783 ..     703     783 .. 0.98

  Alignments for each domain:
  == domain 1  score: 87.2 bits;  conditional E-value: 1.3e-27
                    SCHHHHHHHHHHHHHHHHHHSCTTTEEEEEHHHHHHHHHHHTSBTTTBTCCHHHHHHHHTHHHHHHHHHTTSSSTTSEEEE CS
  ClpB_D2-small   1 LtkeelkkIvdlalkklekrlkergvelevtdealdalaekgydpeyGARpLrriiqreiedplaeeilsgelkegdtvrv 81 
                    L+k+ l++Ivd+++k++++r+++++++l+++dea+ +l ++gyd  yGARpL+r+i++ei++p+a+ +l+g++++g+tv++
     CCD26264.1 703 LSKNVLRSIVDIRIKEIQERINDKRMQLSLSDEAKMWLTDHGYDALYGARPLNRLIHKEILNPMATFLLKGQIRNGETVNI 783
                    8999*************************************************************************9975 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   1.1e-13   4.4e-11       2     111 ..     137     249 ..     136     272 .. 0.77
   2 !   29.8   0.0   1.6e-09   6.5e-07       2     111 ..     535     653 ..     534     665 .. 0.87

  Alignments for each domain:
  == domain 1  score: 43.3 bits;  conditional E-value: 1.1e-13
                 EEESSTTSSHHHHHHHHHHHH..........THEEEEEETTTCS..SSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHHTTCCCHHHHHHHHH CS
         AAA   2 llyGppGtGKTllakavakel..........gvefleisgsell..skyvgesekkirelfkeakekakpsilfiDEidalaksrsgseseeeervvnq 88 
                 +l+G  G+GKT+l+  +a+ +          + +++++++ +l+   ky ge e++++ +++e+ + ++ +i+fiDE++ l +     +s+ ++++ n 
  CCD26264.1 137 VLIGRAGVGKTSLIDGLAQRIvsgevpeslkDKQLITLDLGSLIagAKYRGEFEERLKSVLDEIDKRQGEVIIFIDEVHMLLGLG---KSDGSMDASNI 232
                 589*****************76665555554488*********97778****************999967************999...88888899998 PP

                 HHHHHHHTTTSSSTEEEEEEESS CS
         AAA  89 Llteldgvkkkeskvivigatnr 111
                 L ++l +  +      +i at+ 
  CCD26264.1 233 LKPKLAKGLR------CISATTL 249
                 8888776544......4444444 PP

  == domain 2  score: 29.8 bits;  conditional E-value: 1.6e-09
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCSSS.............STTHHHHHHHHHHHHHHHTSTS.EEEEEETGGGHHHHHTTCCCHHHH CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsellsk.............yvgesekkirelfkeakekakp.silfiDEidalaksrsgseseeee 83 
                 ++ Gp GtGKT l ka+a  +   +++++++++se+ +k             +++es  ++ e +++ k    p  ++++DE+++ +++          
  CCD26264.1 535 MFLGPTGTGKTELTKALAVIFiddESNVIRFDMSEFQEKhtvsrligappgyVLSESGGQLTEAVRR-K----PyAVILFDEFEKAHPDV--------- 619
                 789*****************87767************999***********8889999999999976.2....558**********9999......... PP

                 HHHHHHHHHHHHTTTS........SSTEEEEEEESS CS
         AAA  84 rvvnqLlteldgvkkk........eskvivigatnr 111
                    + Ll++ld+ k           +++i+++++n 
  CCD26264.1 620 --SKLLLQVLDEGKLTdslghhvdFRNTIIVMTSNI 653
                 ..9999999999988888899888555788888886 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.2     0.002      0.83       3      76 ..     137     216 ..     135     265 .. 0.72
   2 !   38.8   0.0   1.9e-12   8.1e-10       2     124 ..     534     655 ..     533     712 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.002
                 EEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--............--------..G-SEEEEESGGG CS
       AAA_5   3 lLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik...ngttslvdsplvraar..egeilvlDEver 76 
                 +L+G  G+gK++l++ la+++   ev + +  +++ + dl   +  +   ++ +++ +s+l +  +     i+++DEv++
  CCD26264.1 137 VLIGRAGVGKTSLIDGLAQRIvSGEVPESLKDKQLITLDLGSLIAGAkyrGEFEERLKSVLDEIDKrqGEVIIFIDEVHM 216
                 79******************986666666666666555554433333331333444444444333352333456677665 PP

  == domain 2  score: 38.8 bits;  conditional E-value: 1.9e-12
                 EEEE--SSSSHHHHHHHGGGGB.S--EEEEE--TT--HHHHH--B--............--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaal.nreveyvqltrdtteedlkgrreik...ngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrl 94 
                 ++ +Gp+GtgK+el++ la  +  +e +++ +  +  +e+ + +r i    +   s + + l++a+r    +++++DE+e+a+++v + Ll++l+e +l
  CCD26264.1 534 FMFLGPTGTGKTELTKALAVIFiDDESNVIRFDMSEFQEKHTVSRLIGappGYVLSESGGQLTEAVRrkPYAVILFDEFEKAHPDVSKLLLQVLDEGKL 632
                 6899*******************5555555554433333333333334445777888889*******76668999************************ PP

                 E..-SSSEEE---......-EEEEEESS-- CS
       AAA_5  95 lleeggelvkaknddllerfrviatanpld 124
                   +++g+ v+++n      + +++t+n  +
  CCD26264.1 633 T-DSLGHHVDFRN------TIIVMTSNIGQ 655
                 9.999******99......89999999755 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.3   1.1e-06   0.00045       2      49 ..     114     158 ..     113     231 .. 0.83
   2 !   15.3   0.0   4.9e-05      0.02       1      63 [.     502     570 ..     502     590 .. 0.80
   3 ?    2.8   0.1      0.34   1.4e+02     134     162 ..     601     630 ..     593     640 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 1.1e-06
      AAA_16   2 lvGReeeleqLlsalervrsgrpelvllsGesGvGKsslvrellrale 49 
                 ++GR++e+++  ++l+r  ++   + +l+G +GvGK+sl++ l++++ 
  CCD26264.1 114 VIGRDDEIARAIQILSRRTKN---NPVLIGRAGVGKTSLIDGLAQRIV 158
                 78******7777777766555...55899***********99998775 PP

  == domain 2  score: 15.3 bits;  conditional E-value: 4.9e-05
      AAA_16   1 rlvGReeeleqLlsalervrsgrp......elvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                 r+vG +e ++++++a++  r+g +       + ++ G+ G+GK+ l ++l+  + +d+  ++r +  ++
  CCD26264.1 502 RVVGQDEAISAIADAVRLQRAGLTnekrpiASFMFLGPTGTGKTELTKALAVIFIDDESNVIRFDMSEF 570
                 589**************666665566677999*****************99877777677776666666 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.34
      AAA_16 134 erp.lvlvlDdlqwadeaslqllaaLlrll 162
                 ++p  v+++D++++a ++  +ll + l+++
  CCD26264.1 601 RKPyAVILFDEFEKAHPDVSKLLLQVLDEG 630
                 34559*****************77766665 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   6.6e-05     0.028       4     104 ..     132     218 ..     129     239 .. 0.75
   2 !   10.7   0.0    0.0012      0.48      10     117 ..     536     628 ..     532     638 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 6.6e-05
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdl.lrellralglelkaerlsseellealeqalraravielliiDEaq 101
                 t++  v++G +G+GKT l+  l+++              v+ ++p+s + k+l   +l + +   +   r++ ee l+ + + +++r+  +++ iDE++
  CCD26264.1 132 TKNNPVLIGRAGVGKTSLIDGLAQRI-------------VSGEVPESLKDKQLiTLDLGSLIAGAKY--RGEFEERLKSVLDEIDKRQGEVIIFIDEVH 215
                 778889***************99985.............7778888885555526666666665444..588888889999999999887888899999 PP

      AAA_22 102 hlr 104
                  l 
  CCD26264.1 216 MLL 218
                 964 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0012
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrseea 108
                   G++GtGKT l + l+  +         ++ v+++++++  +  +    + r +g +  +    ++e   +l++a+r++   ++++ DE+++  ++++
  CCD26264.1 536 FLGPTGTGKTELTKALAVIFID------DESNVIRFDMSEFQEKHT----VSRLIGAPPGY---VLSESGGQLTEAVRRKPY-AVILFDEFEKA-HPDV 619
                 57***************99843......499999999999996554....57778887778...999999999999999999.99999999998.7666 PP

      AAA_22 109 leeLrslln 117
                  + L + l+
  CCD26264.1 620 SKLLLQVLD 628
                 666655555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0022      0.93      45     105 ..     131     195 ..     117     217 .. 0.73
   2 ?   -1.2   0.1       3.4   1.4e+03       4      39 ..     407     442 ..     405     452 .. 0.81
   3 !   15.8   0.0   2.1e-05    0.0089      49      87 ..     533     571 ..     524     583 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0022
   IstB_IS21  45 ekkenivllGpsGvGKshlaialgveavr....aglsvlfvrvedLveelkrarrdgklaralkr 105
                 ++k+n vl+G +GvGK+ l   l+++ v     + l+   + + dL + ++ a+  g+++++lk+
  CCD26264.1 131 RTKNNPVLIGRAGVGKTSLIDGLAQRIVSgevpESLKDKQLITLDLGSLIAGAKYRGEFEERLKS 195
                 578999**************999999876222233444445556666666666666666666555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 3.4
   IstB_IS21   4 letrlrlaklpaqktledidfraarsldkrkvkeLa 39 
                  ++ l++a+++ +k+  + d+++a +l   ++ eL 
  CCD26264.1 407 AKADLEQARIQLEKCQREGDYTKASELRYSRIPELE 442
                 567789999999999999999999998888887774 PP

  == domain 3  score: 15.8 bits;  conditional E-value: 2.1e-05
   IstB_IS21  49 nivllGpsGvGKshlaialgveavraglsvlfvrvedLv 87 
                 ++++lGp+G+GK+ l+ al+v  + ++ +v+ + ++++ 
  CCD26264.1 533 SFMFLGPTGTGKTELTKALAVIFIDDESNVIRFDMSEFQ 571
                 6899********************999999877776655 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.2e-06    0.0005      71     185 ..     156     271 ..     119     274 .. 0.86
   2 ?   -3.0   0.0       9.5     4e+03      53      84 ..     315     344 ..     279     366 .. 0.60
   3 ?    2.8   0.0      0.17        69      31      53 ..     526     549 ..     495     561 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.2e-06
        TniB  71 pvlvvqappkpdekrlyaaiLealgaplkararvskleqqvlrllrelkvrvLi.iDEihnlla.gsarkqreflnalk.sLgnelkipivlvGteeal 166
                 +++  ++p++ ++k+l +  L +l a +k r + ++  + vl  +++ + +v+i iDE+h ll  g+++    + n+lk +L   l++  + + t + +
  CCD26264.1 156 RIVSGEVPESLKDKQLITLDLGSLIAGAKYRGEFEERLKSVLDEIDKRQGEVIIfIDEVHMLLGlGKSDGSMDASNILKpKLAKGLRC--ISATTLDEF 252
                 578889999999******99************999999999999998888887759*****99548888899999***9668888886..8889***** PP

        TniB 167 ralrtDpqlasRFepialp 185
                 +++++Dp la+RF+pi l+
  CCD26264.1 253 KIIEKDPALARRFQPIILN 271
                 ***************9986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 9.5
        TniB  53 ekFarlhppekdedaekvpvlvvqappkpdek 84 
                 ++F  ++    d  +e + vl +q  +kpde 
  CCD26264.1 315 DRFLPDKA--IDLVDEACAVLRLQHESKPDEI 344
                 33333322..2455677888888888888874 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.17
        TniB  31 krkrm.pnlllvGdsnnGKtmive 53 
                 ++kr+  + +++G++ +GKt + +
  CCD26264.1 526 NEKRPiASFMFLGPTGTGKTELTK 549
                 334433899***********9987 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.22        91       2      44 ..     115     155 ..     114     217 .. 0.70
   2 !   22.9   0.0   1.4e-07   5.8e-05      22     134 ..     529     645 ..     503     667 .. 0.77

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.22
                      ---SHHHHHHHHHHHHHCTSSS-EEEECSTTSSHHHHHHHHHH CS
  Sigma54_activat   2 igesealkelleqikkvaktdlsvlitGesGtGKellaraihe 44 
                      ig++++++++++ +++ +k + +v + G  G+GK+ l + + +
       CCD26264.1 115 IGRDDEIARAIQILSRRTK-NNPV-LIGRAGVGKTSLIDGLAQ 155
                      6667777777776666543.3455.56*******987655544 PP

  == domain 2  score: 22.9 bits;  conditional E-value: 1.4e-07
                      S..S-EEEECSTTSSHHHHHHHHHHHSTTTTS-EEEEETTTS-TTCHHHHHHEBSSSSSTTTSS-BE.HHHHHTTTSEEEEETGGGS-HHHHHH CS
  Sigma54_activat  22 d..lsvlitGesGtGKellaraiheaskrkekpfvavncaaipeelleseLFGhekGaFtGAekekk.GlfekadgGtlfLDeigelplelQek 112
                      +  +s + +G +GtGK+ l +a+      +e++++++++++++e+   s+L G   G     +  +   ++++    ++++De ++  +++ + 
       CCD26264.1 529 RpiASFMFLGPTGTGKTELTKALAVIFIDDESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLtEAVRRKPYAVILFDEFEKAHPDVSKL 622
                      14578999************************************************965433332223677777889***************** PP

                      HHHHHHHSEEE.SBTSSSEEE-- CS
  Sigma54_activat 113 Llrvlqegeve.rvGsskeikvd 134
                      Ll+vl+eg+++  +G++   + +
       CCD26264.1 623 LLQVLDEGKLTdSLGHHVDFRNT 645
                      *******9986257766554433 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.4e-05     0.018       6      77 ..     137     218 ..     133     257 .. 0.75
   2 !    7.7   0.0    0.0081       3.4       8      90 ..     537     630 ..     533     650 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.4e-05
      AAA_14   6 vitGaRrvGKTtllkqlikell.......vkkesilyinldderd.kkla.dpekllelilek.lkeekktylflDEiqevp 77 
                 v+ G   vGKT l+  l+++          k+++ + ++l +    +k++ ++e+ l+ +l++  k++++ ++f+DE++++ 
  CCD26264.1 137 VLIGRAGVGKTSLIDGLAQRIVsgevpesLKDKQLITLDLGSLIAgAKYRgEFEERLKSVLDEiDKRQGEVIIFIDEVHMLL 218
                 6778889**********988889998988888888888887754443344355545555555524558999********984 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0081
      AAA_14   8 tGaRrvGKTtllkqlikellvkkesilyinldderdkkladpe....kllelileklke......ekkty..lflDEiqev.pewekalkslvdeg 90 
                  G+  +GKT l k l+   + ++++++ +++ + ++k     +      + ++l++  +      ++k y  +++DE  ++ p+++k l +++deg
  CCD26264.1 537 LGPTGTGKTELTKALAVIFIDDESNVIRFDMSEFQEKHTV--SrligAPPGYVLSESGGqlteavRRKPYavILFDEFEKAhPDVSKLLLQVLDEG 630
                 69999**********9777777777887777776664422..21233334555554211344567344444499****987588999999988887 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0015      0.65       4      42 ..     117     155 ..     115     161 .. 0.89
   2 !   13.1   0.1   0.00016     0.067     101     134 ..     188     221 ..     159     233 .. 0.84
   3 ?    4.3   0.0     0.078        32      26      70 ..     537     581 ..     524     631 .. 0.69
   4 ?   -0.5   0.0       2.2   9.4e+02     114     142 ..     600     624 ..     587     652 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0015
    ATPase_2   4 RekelkeleeilerepneiyfiYGpegsGKtaLlkeiie 42 
                 R+ e+ +  +il+r +++  ++ G+ g+GKt+L+  +++
  CCD26264.1 117 RDDEIARAIQILSRRTKNNPVLIGRAGVGKTSLIDGLAQ 155
                 9999*999999999999999999**********987766 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 0.00016
    ATPase_2 101 lvfkaielllekikkkgkkiiiiiDelqklidlg 134
                 + ++ ++++l++i k++ ++ii+iDe+ +l  lg
  CCD26264.1 188 EFEERLKSVLDEIDKRQGEVIIFIDEVHMLLGLG 221
                 567899***********************99444 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.078
    ATPase_2  26 YGpegsGKtaLlkeiienledkdkyviyyialreesiskldefie 70 
                  Gp g GKt L k ++    d + +vi ++  + ++ +++++ i+
  CCD26264.1 537 LGPTGTGKTELTKALAVIFIDDESNVIRFDMSEFQEKHTVSRLIG 581
                 49**********999999988888888777666666666666655 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 2.2
    ATPase_2 114 kkkgkkiiiiiDelqklidlglngaellv 142
                 ++k    +i++De+ k+     + ++ll+
  CCD26264.1 600 RRK-PYAVILFDEFEKAH---PDVSKLLL 624
                 222.33899******998...44445555 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.014       5.7      32      56 ..     132     156 ..     121     167 .. 0.81
   2 ?   -1.1   0.0       2.7   1.1e+03     100     111 ..     205     216 ..     186     218 .. 0.83
   3 !   12.4   0.0   0.00019      0.08      35      82 ..     533     580 ..     520     583 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.014
       AAA_7  32 nkkpvllvGptGtGKtviikdllkk 56 
                  k++ +l+G +G+GKt++i  l ++
  CCD26264.1 132 TKNNPVLIGRAGVGKTSLIDGLAQR 156
                 45667899***********987765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2.7
       AAA_7 100 kklvvFvDDlnm 111
                  ++++F+D+++m
  CCD26264.1 205 GEVIIFIDEVHM 216
                 5789******99 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.00019
       AAA_7  35 pvllvGptGtGKtviikdllkkldkekylsltinfsaqtsanqlqdii 82 
                 ++++ GptGtGKt ++k l   + +++ +++ + +s   + +++ ++i
  CCD26264.1 533 SFMFLGPTGTGKTELTKALAVIFIDDESNVIRFDMSEFQEKHTVSRLI 580
                 589***************888887799999999999998888887776 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00021     0.088       4      32 ..     137     165 ..     136     215 .. 0.77
   2 ?    7.0   0.0     0.012       5.1       5      99 ..     536     621 ..     533     641 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00021
                 EEEC-TTTCHHHHHHHHHHHHCTS-SCCC CS
       NACHT   4 ilqGeaGsGKTtLlqklalawaegklpqg 32 
                 +l G+aG+GKT L+ +la+ + +g+ p+ 
  CCD26264.1 137 VLIGRAGVGKTSLIDGLAQRIVSGEVPES 165
                 689******************99998875 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.012
                 EEC-TTTCHHHHHHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCTS--SSS-CCHHHHCCSCCCEEEEEE-STT-SS-TCH CS
       NACHT   5 lqGeaGsGKTtLlqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlpepaapvsevwavllelperlLlilDglDelvtdlgq 99 
                   G+ G GKT L + la+   +++ +      v+ + ++e++++    ++ +l+ ++     +++    ++ ++++  +++++D +++++ d ++
  CCD26264.1 536 FLGPTGTGKTELTKALAVIFIDDESN------VIRFDMSEFQEKH---TVSRLIGAPPGYVLSESGGQLTEAVRRKPYAVILFDEFEKAHPDVSK 621
                 679***************99999844......5666677776664...45555555555555555555555666688888999999888887766 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       5.8   2.4e+03     117     152 ..       8      41 ..       7      47 .. 0.77
   2 !   13.8   0.0   9.6e-05      0.04      92     122 ..     126     156 ..      80     170 .. 0.77
   3 ?    5.1   0.0     0.045        19     100     120 ..     532     552 ..     457     588 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 5.8
                  HHHCTT-----S--------------SEEEEEETTT CS
  RsgA_GTPase 117 nallpelelktgevseklgrGkhTTtavellelaeg 152
                  n+l+ +l  k+ +vs+  ++G  T ++++ll+l++ 
   CCD26264.1   8 NTLQKSLLNKVPSVST--KHGMTTVKNTRLLSLSSR 41 
                  6777777777888877..589999999999999865 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 9.6e-05
                  HHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  92 elkellkdktsvlvGqSGvGKStLinallpe 122
                  ++ ++ +++  vl+G  GvGK++Li+ l+++
   CCD26264.1 126 QILSRRTKNNPVLIGRAGVGKTSLIDGLAQR 156
                  444555567789**************99876 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.045
                  SEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinall 120
                     +++G++G GK+ L +al+
   CCD26264.1 532 ASFMFLGPTGTGKTELTKALA 552
                  56789************9997 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0     0.014       5.9      15      35 ..     137     157 ..     128     203 .. 0.84
   2 ?   -1.6   1.2       8.3   3.5e+03      86      86 ..     412     412 ..     333     511 .. 0.55
   3 !   12.4   0.0    0.0004      0.17      15      51 ..     535     572 ..     527     640 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.014
                 EEEESTTSSHHHHHHHHTTSS CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagll 35 
                 +++G+ G GK++L+  la+  
  CCD26264.1 137 VLIGRAGVGKTSLIDGLAQRI 157
                 79************9998875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 8.3
                 H CS
                 x RF
    ABC_tran  86 e 86 
                 e
  CCD26264.1 412 E 412
                 1 PP

  == domain 3  score: 12.4 bits;  conditional E-value: 0.0004
                 EEEESTTSSHHHHHHHHTTSS--SEEE.EEETTCEGGG CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
    ABC_tran  15 aivGenGaGKStLlkllagllkpteGe.illdgkdlke 51 
                  ++G++G+GK+ L k+la    ++e + i++d+ +++e
  CCD26264.1 535 MFLGPTGTGKTELTKALAVIFIDDESNvIRFDMSEFQE 572
                 689***************99888665515777887777 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00034      0.14      21      43 ..     132     154 ..     123     162 .. 0.81
   2 ?    6.1   0.0     0.021       8.9      24      47 ..     533     556 ..     523     565 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00034
      AAA_29  21 lkgatlltGpsGsGKSTllDAiq 43 
                 +k++ +l+G+ G+GK++l+D ++
  CCD26264.1 132 TKNNPVLIGRAGVGKTSLIDGLA 154
                 445789**************986 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.021
      AAA_29  24 atlltGpsGsGKSTllDAiqalLv 47 
                 ++++ Gp+G+GK+ l  A++++++
  CCD26264.1 533 SFMFLGPTGTGKTELTKALAVIFI 556
                 4899***********999999876 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0048         2      10      43 ..     124     157 ..     115     165 .. 0.74
   2 !    7.4   0.0    0.0097       4.1      21      41 ..     533     553 ..     506     562 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0048
                 HHHHHHHCHTEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  10 lgkklakalgdvilLeGdLGaGKTtlvrglakal 43 
                 + + l + +++  +L G  G+GKT l+ gla+ +
  CCD26264.1 124 AIQILSRRTKNNPVLIGRAGVGKTSLIDGLAQRI 157
                 44444444466789*****************987 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0097
                 EEEEEESTTSSHHHHHHHHHH CS
        TsaE  21 vilLeGdLGaGKTtlvrglak 41 
                  +++ G+ G+GKT l+++la 
  CCD26264.1 533 SFMFLGPTGTGKTELTKALAV 553
                 38899************9985 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.027        11       5      24 ..     137     156 ..     133     168 .. 0.87
   2 ?   -2.6   0.0       9.6     4e+03      80     128 ..     465     512 ..     458     516 .. 0.73
   3 !    9.4   0.0     0.002      0.82       4      22 ..     534     552 ..     531     589 .. 0.89

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.027
   PduV-EutP   5 lliGkvgsGKttLtqalkge 24 
                 +liG+ g+GKt+L   l ++
  CCD26264.1 137 VLIGRAGVGKTSLIDGLAQR 156
                 79***********9988765 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 9.6
   PduV-EutP  80 fppgfasvfnkeviGiitkidlaedeenieaveelLksaGaekifevsa 128
                  ++ +++v++k + Gi t + l  d++++ + e+ Lk+  + +   +sa
  CCD26264.1 465 TSNDISKVVAK-MTGIPTETVLKGDKDRLLYMENSLKERVVGQDEAISA 512
                 55566666665.5799999999999999999999998876666555555 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.002
   PduV-EutP   4 illiGkvgsGKttLtqalk 22 
                  +++G++g+GKt Lt+al 
  CCD26264.1 534 FMFLGPTGTGKTELTKALA 552
                 69**************996 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.61   2.6e+02       5      40 ..     122     157 ..     118     163 .. 0.74
   2 !   12.5   0.0   0.00015     0.064      11      58 ..     525     574 ..     515     590 .. 0.86
   3 ?   -0.2   0.0       1.3   5.2e+02      42      65 ..     600     623 ..     578     662 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.61
  Zeta_toxin   5 lkdkkypsqerPklillgGqpGAGKselaellkdel 40 
                 ++++++ s++++   +l G  G GK++l++ l++++
  CCD26264.1 122 ARAIQILSRRTKNNPVLIGRAGVGKTSLIDGLAQRI 157
                 5555555666666667889**********9998876 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 0.00015
  Zeta_toxin  11 psqerPklill.gGqpGAGKselaellkdele.rqgnvvrldpDdlRelh 58 
                 ++++rP++ ++  G +G GK+el ++l+  +   ++nv+r+d  +++e h
  CCD26264.1 525 TNEKRPIASFMfLGPTGTGKTELTKALAVIFIdDESNVIRFDMSEFQEKH 574
                 567999999984599**************998899************999 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 1.3
  Zeta_toxin  42 rqgnvvrldpDdlRelhPeyeeil 65 
                 r++ + ++  D++ + hP+++++l
  CCD26264.1 600 RRKPYAVILFDEFEKAHPDVSKLL 623
                 6889999999*********99865 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.027        11       3      22 ..     137     156 ..     135     168 .. 0.82
   2 !    9.6   0.0    0.0025         1       3      20 ..     535     552 ..     533     573 .. 0.86

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.027
      AAA_28   3 vitGgestGKTtlleaLaar 22 
                 v++G  + GKT+l+  La+r
  CCD26264.1 137 VLIGRAGVGKTSLIDGLAQR 156
                 899***************98 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.0025
      AAA_28   3 vitGgestGKTtlleaLa 20 
                 +++G+ +tGKT l++aLa
  CCD26264.1 535 MFLGPTGTGKTELTKALA 552
                 799**************9 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.3    0.0014      0.57      46     115 ..     126     213 ..     108     216 .. 0.66
   2 ?    4.5   0.0     0.039        16      52     100 ..     530     578 ..     500     747 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0014
      DUF815  46 qfleglpannvLLwGarGtGKSslvkallneyaeeg...............Lrlievek...edlkelpklvellrerperfilfvDD 115
                 q l+ ++ nn +L+G  G+GK sl+  l +++ + +                 li  +k   e  + l+++++++ +r+ ++i+f+D 
  CCD26264.1 126 QILSRRTKNNPVLIGRAGVGKTSLIDGLAQRIVSGEvpeslkdkqlitldlGSLIAGAKyrgEFEERLKSVLDEIDKRQGEVIIFIDE 213
                 567777889999****************999887665666666444443321222222211022345777777777777777777775 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.039
      DUF815  52 pannvLLwGarGtGKSslvkallneyaeegLrlievekedlkelpklve 100
                 p    ++ G  GtGK  l kal   + +++  +i  + ++ +e  ++ +
  CCD26264.1 530 PIASFMFLGPTGTGKTELTKALAVIFIDDESNVIRFDMSEFQEKHTVSR 578
                 5566789999***********9999998888888777776666555554 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0     0.002      0.82       3      37 ..     137     166 ..     137     225 .. 0.68
   2 ?   -1.8   0.2       5.2   2.2e+03      87     102 ..     405     420 ..     342     517 .. 0.57
   3 ?    6.2   0.0     0.019         8       3      31 ..     535     559 ..     533     599 .. 0.68
   4 ?    2.5   0.0      0.25   1.1e+02     255     286 ..     601     631 ..     595     651 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.002
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdels 37 
                 vliG+ g+GK++L+d l      +r v g+ +e+ 
  CCD26264.1 137 VLIGRAGVGKTSLIDGLA-----QRIVSGEVPESL 166
                 8****************4.....333333333333 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 5.2
      AAA_21  87 lssvetllesgllldk 102
                 + ++ +l++ ++ l k
  CCD26264.1 405 KNAKADLEQARIQLEK 420
                 2333333334444444 PP

  == domain 3  score: 6.2 bits;  conditional E-value: 0.019
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdveg 31 
                 ++ Gp g+GK+ L +al +++      + 
  CCD26264.1 535 MFLGPTGTGKTELTKALAVIFI----DDE 559
                 678**************99963....222 PP

  == domain 4  score: 2.5 bits;  conditional E-value: 0.25
      AAA_21 255 lkkgsllliDEpEngLHPkllrrllellkels 286
                 +k+ +++l+DE+E   HP + + ll++l+e +
  CCD26264.1 601 RKPYAVILFDEFEKA-HPDVSKLLLQVLDEGK 631
                 44459********99.9999999999996654 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0035       1.5      17      41 ..     132     156 ..     119     218 .. 0.85
   2 ?    6.1   0.0     0.019       8.1      23      52 ..     536     565 ..     527     632 .. 0.71

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0035
      AAA_30  17 gdrvavltGpAGtGKttalkalrea 41 
                 ++   vl G+AG GKt ++ +l++ 
  CCD26264.1 132 TKNNPVLIGRAGVGKTSLIDGLAQR 156
                 4455799************999764 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.019
      AAA_30  23 ltGpAGtGKttalkalreaweaaggrvigl 52 
                   Gp GtGKt + kal+ ++ +++ +vi +
  CCD26264.1 536 FLGPTGTGKTELTKALAVIFIDDESNVIRF 565
                 579*************98888887777765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.017       6.9       3      23 ..     138     158 ..     137     176 .. 0.82
   2 !    8.2   0.0    0.0074       3.1       2      23 ..     535     556 ..     534     578 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.017
  RNA_helicase   3 lyGpsgeGKStlakeLakall 23 
                   l G++g+GK++l++ La+++ 
    CCD26264.1 138 LIGRAGVGKTSLIDGLAQRIV 158
                   78***************9997 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0074
  RNA_helicase   2 wlyGpsgeGKStlakeLakall 23 
                   ++ Gp+g+GK+ l+k La  + 
    CCD26264.1 535 MFLGPTGTGKTELTKALAVIFI 556
                   689*************987665 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0     0.011       4.6       3      66 ..     138     202 ..     137     219 .. 0.57
   2 !    8.7   0.0    0.0059       2.5       3      19 ..     536     552 ..     535     582 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.011
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe..aldeskrldedkldklldalee 66 
                 l G +GvGKt+l + L++r  ++ ++ + +k+++l + +     a  +++ + e++l+++ld++++
  CCD26264.1 138 LIGRAGVGKTSLIDGLAQRI-VSGEVPESLKDKQLITLDLGSliAGAKYRGEFEERLKSVLDEIDK 202
                 7899************9995.334444444444444444444344444555555554555554444 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0059
      AAA_18   3 ltGtpGvGKttlakeLs 19 
                   G+ G+GKt+l+k+L+
  CCD26264.1 536 FLGPTGTGKTELTKALA 552
                 57**************6 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.017       7.3       3      28 ..     134     159 ..     132     228 .. 0.74
   2 !    7.9   0.0    0.0054       2.2       5      77 ..     534     615 ..     532     631 .. 0.64

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.017
      AAA_24   3 lkiliyGpsgiGKTtlakelgpkplf 28 
                 ++ +++G +g+GKT+l+  l ++++ 
  CCD26264.1 134 NNPVLIGRAGVGKTSLIDGLAQRIVS 159
                 56689***********9988666655 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0054
      AAA_24   5 iliyGpsgiGKTtlakelgpkplfidtekGlksldadkfpdieswedfldevvel..................aaeladyktlviDtidel 77 
                 ++  Gp g+GKT l k l   ++fid e  + + d  +f++ +++         l                  a   ++y ++ +D  +++
  CCD26264.1 534 FMFLGPTGTGKTELTKAL--AVIFIDDESNVIRFDMSEFQEKHTVSR-------LigappgyvlsesggqlteAVRRKPYAVILFDEFEKA 615
                 6779**************..999999998555555555543333222.......1333444455566666665555566666666666555 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0028       1.2       3      24 ..     137     158 ..     136     174 .. 0.84
   2 ?    5.1   0.0      0.06        25       3      30 ..     535     561 ..     533     578 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0028
                 EEESSTTSSHHHHHHCHCT-CC CS
         Roc   3 vlvGdsgvGKtsllkrfvedkf 24 
                 vl+G +gvGKtsl++ + ++ +
  CCD26264.1 137 VLIGRAGVGKTSLIDGLAQRIV 158
                 79***********998877655 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.06
                 EEESSTTSSHHHHHHCHCT-CCC-EEET CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekeks 30 
                 +++G +g+GKt l k +    f ++e++
  CCD26264.1 535 MFLGPTGTGKTELTKALA-VIFIDDESN 561
                 89***********99887.344444444 PP

>> AAA_6  Hydrolytic ATP binding site of dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       2.4     1e+03      36      53 ..     137     154 ..      78     174 .. 0.72
   2 !    9.5   0.0     0.001      0.44      38      54 ..     537     553 ..     529     580 .. 0.85
   3 ?    3.0   0.0     0.097        40      93     126 ..     700     734 ..     670     743 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 2.4
       AAA_6  36 apaGpagtGKtEtvkdLa 53 
                  + G ag GKt  +  La
  CCD26264.1 137 VLIGRAGVGKTSLIDGLA 154
                 345666666666555555 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.001
       AAA_6  38 aGpagtGKtEtvkdLak 54 
                  Gp+gtGKtE +k La 
  CCD26264.1 537 LGPTGTGKTELTKALAV 553
                 6*************996 PP

  == domain 3  score: 3.0 bits;  conditional E-value: 0.097
       AAA_6  93 FnrielevL.Svvaqqiktiqqalkekkkkfvfeg 126
                 Fnr++ +vL S+v  +ik+iq+ +++k+ ++++++
  CCD26264.1 700 FNRLSKNVLrSIVDIRIKEIQERINDKRMQLSLSD 734
                 78888888766667778888888887777777754 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0021      0.88      37     119 ..     137     223 ..     131     246 .. 0.77
   2 ?    3.1   0.0      0.14        60      37      55 ..     535     553 ..     529     562 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0021
      AAA_25  37 llaGapgtGKttlaldlalavatGkpwlg.....pvapeqgkVlyvsaEdsedelrrRlravgealrddarllvldlagv.eslpLfak 119
                 +l+G+ g+GKt l   la  +++G+ +++     ++ +     l+  a  +  e+++Rl+ v+ +++ ++++ ++ +++v + l L ++
  CCD26264.1 137 VLIGRAGVGKTSLIDGLAQRIVSGE-VPEslkdkQLITLDLGSLIAGAKYRG-EFEERLKSVLDEIDKRQGEVIIFIDEVhMLLGLGKS 223
                 699*******************999.77755555444455556666665555.999999999999999999999999888666555544 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.14
      AAA_25  37 llaGapgtGKttlaldlal 55 
                 ++ G++gtGKt l+  la+
  CCD26264.1 535 MFLGPTGTGKTELTKALAV 553
                 578***********99997 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.078        32      10      46 ..     120     157 ..     110     186 .. 0.71
   2 !    8.6   0.0    0.0026       1.1      24      48 ..     533     557 ..     502     653 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.078
  Mg_chelatase  10 eakralei.aaaGgHnlllvGppGsGKtmlakrlpsll 46 
                   e  ra++i +   + n +l+G +G GKt l+  l++ +
    CCD26264.1 120 EIARAIQIlSRRTKNNPVLIGRAGVGKTSLIDGLAQRI 157
                   445666662445677889**********9988776544 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0026
  Mg_chelatase  24 nlllvGppGsGKtmlakrlpsllpp 48 
                   +++++Gp G+GKt l k+l+ ++ +
    CCD26264.1 533 SFMFLGPTGTGKTELTKALAVIFID 557
                   5799***************999865 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.066        27       5      26 ..     137     158 ..     133     175 .. 0.87
   2 !    8.2   0.0    0.0041       1.7       4      32 ..     534     562 ..     531     570 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.066
                 EEEESTTSSHHHHHHHHHHHHH CS
       SRP54   5 llvGlqGaGKTttlaKLaallk 26 
                 +l+G  G+GKT+ +  La+++ 
  CCD26264.1 137 VLIGRAGVGKTSLIDGLAQRIV 158
                 799**************99875 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0041
                 EEEEESTTSSHHHHHHHHHHHHHHTTS-E CS
       SRP54   4 illvGlqGaGKTttlaKLaallkkegkkv 32 
                 ++++G++G+GKT  +  La ++ +++ +v
  CCD26264.1 534 FMFLGPTGTGKTELTKALAVIFIDDESNV 562
                 79*****************9998887766 PP

>> Bac_DnaA  Bacterial dnaA  protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0062       2.6      11      60 ..     114     159 ..     112     167 .. 0.75
   2 ?   -1.7   0.9       5.1   2.1e+03     140     207 ..     340     403 ..     322     411 .. 0.75
   3 ?    3.7   0.0      0.11        47      35      64 ..     532     561 ..     498     576 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0062
                 ---TTTHHHHHHHHHHHHSTTT.S--EEEE-SSSSSHHHHHHHHHHHHHH CS
    Bac_DnaA  11 viGasnrlAlaaalkvaeapgkkynPlfiygevGlGktHLlkaignevle 60 
                 viG  +++A+a+ + ++  +  k nP++i g  G+Gkt L++ +++++++
  CCD26264.1 114 VIGRDDEIARAI-QILSRRT--KNNPVLI-GRAGVGKTSLIDGLAQRIVS 159
                 566777776644.3344444..459*998.9***********99998876 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 5.1
                 -TTT-SS--HHHHHHHHSSEEEE-----HHHH.HHHHHHHHHHTT----TTHHHHHHHH--S-HHHHHH CS
    Bac_DnaA 140 sPkeleeledrlrsrfeaGlvvdieppdletr.lailkkkieaeklevpeevlefiaervtdnvReleg 207
                 +P e+++l+  +     + +++++e   +et  +++ ++++ +++le++++ l+ +++  +++ +e+e+
  CCD26264.1 340 KPDEIQKLDRSI-----MKIQIELESLKKETDpVSVERREALEKELELKNDELSRLTRIWDEEKKEIES 403
                 566666666443.....4577888888888863677777888999999999999888888888888774 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.11
                 --EEEE-SSSSSHHHHHHHHHHHHHHHSSS CS
    Bac_DnaA  35 nPlfiygevGlGktHLlkaignevlenape 64 
                   +++ g++G Gkt L ka++   ++++++
  CCD26264.1 532 ASFMFLGPTGTGKTELTKALAVIFIDDESN 561
                 456788**************9888777665 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.26   1.1e+02      13      35 ..     125     149 ..     114     162 .. 0.72
   2 ?    9.9   0.0    0.0011      0.47      23      46 ..     535     558 ..     516     566 .. 0.85

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.26
                 HHHHH..H-SEEEEE--TTSSTTHH CS
        PhoH  13 lealk..kndivfaiGpaGtGKtyl 35 
                 +++l+  +++  + iG+aG GKt l
  CCD26264.1 125 IQILSrrTKNNPVLIGRAGVGKTSL 149
                 455555555567899********88 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0011
                 EEE--TTSSTTHHHHHHHHHHHHT CS
        PhoH  23 faiGpaGtGKtylavalavealkk 46 
                 + +Gp+GtGKt l+ alav  + +
  CCD26264.1 535 MFLGPTGTGKTELTKALAVIFIDD 558
                 578***************987765 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       3.6   1.5e+03      17      46 ..     126     155 ..      89     165 .. 0.73
   2 ?    1.4   0.1       0.7   2.9e+02     125     144 ..     198     217 ..     181     233 .. 0.77
   3 ?    8.0   0.0    0.0062       2.6       7      44 ..     505     551 ..     500     563 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.6
                 ......TTSEEEEEESTTSTHHHHHHHHHH CS
      ResIII  17 eklkskrdkrglikmaTGtGKTlvaaklie 46 
                 + l+ + +++ ++    G+GKT ++  l++
  CCD26264.1 126 QILSRRTKNNPVLIGRAGVGKTSLIDGLAQ 155
                 33333555566788899*****88766655 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.7
                 ..HHHTTT-SEEEEETGGGT CS
      ResIII 125 seellrdrfdviiiDEaHrl 144
                 +e  +r+ + +i+iDE+H l
  CCD26264.1 198 DEIDKRQGEVIIFIDEVHML 217
                 444556666799******76 PP

  == domain 3  score: 8.0 bits;  conditional E-value: 0.0062
                 HHHHHHHHHT............TTS...EEEEEESTTSTHHHHHHHH CS
      ResIII   7 yQeeaienlleklks......krdk...rglikmaTGtGKTlvaakl 44 
                  Q eai ++++++        ++++    +++  +TGtGKT +  +l
  CCD26264.1 505 GQDEAISAIADAVRLqragltNEKRpiaSFMFLGPTGTGKTELTKAL 551
                 5889999999666555667753333567899**********987554 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.3     0.026        11       9      38 ..     132     161 ..     123     255 .. 0.84
   2 ?    3.7   0.1      0.17        72      13      35 ..     534     556 ..     520     564 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.026
      AAA_19   9 kekvllvtaGpGtGKTrvlkhivallvelg 38 
                 ++++ ++++ +G GKT ++ +  + +v+ +
  CCD26264.1 132 TKNNPVLIGRAGVGKTSLIDGLAQRIVSGE 161
                 55667899***********99988877654 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.17
      AAA_19  13 llvtaGpGtGKTrvlkhivallv 35 
                 ++ +++ GtGKT+++k+   +++
  CCD26264.1 534 FMFLGPTGTGKTELTKALAVIFI 556
                 5678999******9998766655 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.2       3.8   1.6e+03      14      42 ..       9      37 ..       8      48 .. 0.84
   2 ?    8.1   0.0    0.0065       2.7       3      22 ..     137     156 ..     135     213 .. 0.85
   3 ?    1.5   0.0      0.75   3.1e+02       3      20 ..     535     552 ..     533     651 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 3.8
                HHHHHHHTSTEEESSSTTSSSSEEEEEEE CS
    MMR_HSR1 14 tLinaltgekaivsdkpgtTrdinegrvk 42
                tL ++l++++  vs k+g T+  n++ ++
  CCD26264.1  9 TLQKSLLNKVPSVSTKHGMTTVKNTRLLS 37
                788999***99*********999887766 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0065
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 +++Gr  vGK++Li  l ++
  CCD26264.1 137 VLIGRAGVGKTSLIDGLAQR 156
                 68************999886 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.75
                 EEEESTTSSHHHHHHHHH CS
    MMR_HSR1   3 aivGrpNvGKStLinalt 20 
                 +++G + +GK+ L +al 
  CCD26264.1 535 MFLGPTGTGKTELTKALA 552
                 789**********99996 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.16        67       4      22 ..     138     156 ..     137     163 .. 0.90
   2 ?    6.1   0.0     0.028        11       3      20 ..     535     552 ..     534     608 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.16
      AAA_33   4 lvGlpGsGKstlaerllkk 22 
                 l+G +G+GK+ l+++l+++
  CCD26264.1 138 LIGRAGVGKTSLIDGLAQR 156
                 79*************9975 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.028
      AAA_33   3 llvGlpGsGKstlaerll 20 
                 ++ G+ G+GK+ l + l+
  CCD26264.1 535 MFLGPTGTGKTELTKALA 552
                 899**********99886 PP

>> NADH-UOR_E  putative NADH-ubiquinone oxidoreductase chain E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1    0.0013      0.56      10      40 ..     186     217 ..     183     233 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.0013
                 TTTTHHHHHHHHHT.TS-TT-EEEEEE-SS-- CS
  NADH-UOR_E  10 kdnllerlkelldk.evkegevaiflfevgdF 40 
                 + +++erlk +ld+ + ++gev+if+ ev+  
  CCD26264.1 186 RGEFEERLKSVLDEiDKRQGEVIIFIDEVHML 217
                 679*********9657889*********9755 PP

>> AAA_3  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       1.7     7e+02       4      23 ..     138     157 ..     136     164 .. 0.86
   2 ?    7.6   0.0    0.0078       3.3      63     107 ..     604     649 ..     534     656 .. 0.65

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 1.7
       AAA_3   4 legvPGlaktllvkalakal 23 
                 l g  G++kt l+  la+ +
  CCD26264.1 138 LIGRAGVGKTSLIDGLAQRI 157
                 56789***********9976 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0078
       AAA_3  63 anllladeinrappktqsalleameerqvtve.gethklpepflvl 107
                   ++l de ++a p +   ll++++e ++t + g+  ++ ++ +v+
  CCD26264.1 604 YAVILFDEFEKAHPDVSKLLLQVLDEGKLTDSlGHHVDFRNTIIVM 649
                 4699************************996524444555555554 PP

>> DUF4094  Domain of unknown function (DUF4094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.1    0.0035       1.5      58      86 ..     333     362 ..     310     364 .. 0.86
   2 ?   -0.7   1.1       4.7     2e+03      22      78 ..     392     448 ..     390     458 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0035
     DUF4094  58 lg.evskthkaiqtLdktissLemeLaaar 86 
                 l+ + + ++++iq+Ld++i ++++eL++ +
  CCD26264.1 333 LRlQHESKPDEIQKLDRSIMKIQIELESLK 362
                 5556677899****************9765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 4.7
     DUF4094  22 Rlwtvp.s..diirqsk...eelklvsedcdskdaesrskdilgevskthkaiqtLdktissL 78 
                 R+w+++ +  + i++ k   e+ ++  e+c+      r+ d+ +  + + + i  L+k++ s 
  CCD26264.1 392 RIWDEEkKeiESIKNAKadlEQARIQLEKCQ------REGDYTKASELRYSRIPELEKKVQSS 448
                 8997665434333332223433333445554......24455555555556666666666655 PP

>> YabA  Initiation control protein YabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.6     0.014       5.8       8      80 ..     342     425 ..     336     428 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.014
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHH....HHHHHHHH......XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        YabA   8 dkleeleeqleelleeleelkeelael.leenaeLele....neklrerl......eeeekkekekkkelsegkenLarlYeeG 80 
                 d++++l++++++++ ele+lk+e+  + +e+ ++Le e    n++l ++       ++e ++ k+ k++l++++ +L++  +eG
  CCD26264.1 342 DEIQKLDRSIMKIQIELESLKKETDPVsVERREALEKElelkNDELSRLTriwdeeKKEIESIKNAKADLEQARIQLEKCQREG 425
                 68999*****************99876245555555443333888887777787655555666777777888888888777776 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5  18.6      0.43   1.8e+02      23     200 .]     137     419 ..     128     458 .. 0.65
   2 ?    6.1   0.8     0.034        14      22      48 ..     534     560 ..     532     735 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.43
      AAA_23  23 lItGpNGaGKTTildAikl.aLygetprlsrks.......grgfeksdveiesegkvkayveltfenkdgry........................... 86 
                 +++G  G GKT+++d +   +  ge+p+  +++       g+ +  ++++ e+e    + ++  +  +d+r+                           
  CCD26264.1 137 VLIGRAGVGKTSLIDGLAQrIVSGEVPESLKDKqlitldlGSLIAGAKYRGEFE----ERLKSVLDEIDKRQgeviifidevhmllglgksdgsmdasn 231
                 578999999999999999746689998877766677776655555555554444....34444444444444455667777777777777777778888 PP

      AAA_23  87 ..............................................................trsiererelskkkgkttkkaklellei.....dele 118
                                                                                ++i+++  +s    ++++ ++++l ++     de +
  CCD26264.1 232 ilkpklakglrcisattldefkiiekdpalarrfqpiilnepsvsdtisilrglkeryevhhGVRITDTALVSAAVLSNRYLTDRFLPDKaidlvDEAC 330
                 888888888888888888888888888888888888888866666655555555444444443333333333333333333333333333222232222 PP

      AAA_23 119 qfise..llgskki.ilnlilflgqer...feefelkdkkerleelekeleeledekkllekl.eqekekekeleeleeeleeilkele 200
                   ++   + + ++i  l++++++ q +    +++ +    er e+lekele ++de + l +   +ek++ + +++ + +le++  +le
  CCD26264.1 331 AVLRLqhESKPDEIqKLDRSIMKIQIElesLKKETDPVSVERREALEKELELKNDELSRLTRIwDEEKKEIESIKNAKADLEQARIQLE 419
                 222222233333333334444444444322334444555559999*******9999998888877888899999999999999877765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.034
      AAA_23  22 tlItGpNGaGKTTildAiklaLygetp 48 
                 + + Gp+G+GKT +  A+  ++  + +
  CCD26264.1 534 FMFLGPTGTGKTELTKALAVIFIDDES 560
                 7899*************9999887644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1402  (0.0781973); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                       107  (0.00596798); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              43  [number of targets reported over threshold]
# CPU time: 0.94u 0.29s 00:00:01.23 Elapsed: 00:00:00.49
# Mc/sec: 4980.00
//
Query:       CCD26265.1  [L=540]
Description: hypothetical protein NDAI_0H00910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-21   75.0   0.4    3.2e-20   73.2   0.0    1.9  2  SET        SET domain
  ------ inclusion threshold ------
       0.03   14.8   0.6          2    8.9   0.2    2.9  2  EF-hand_7  EF-hand domain pair
       0.59   10.4   6.4        6.8    7.0   0.6    2.6  2  Mrpl_C     54S ribosomal protein L8 C-terminal domain
       0.62   10.6   0.0       0.62   10.6   0.0    3.1  4  ANAPC2     Anaphase promoting complex (APC) subunit 2


Domain annotation for each model (and alignments):
>> SET  SET domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   7.2e-24   3.2e-20       1     169 []      87     313 ..      87     313 .. 0.88
   2 ?   -0.5   0.1      0.32   1.4e+03      59      90 ..     435     466 ..     353     537 .. 0.53

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 7.2e-24
                 SCEEEESSXBXTTXEEEEEEECCEECHHHHHHHHHH..................................HTEEEEEXG.GXX..GGSX.HHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................................xxxxxxxxx.xxx..xxxx.xxxxxxxxx RF
         SET   1 GrGvfAtedIpkgeficeypeeiiltkdeadksele..................................aylfslpea.pkn..laft.kelakasas 61 
                 Gr+++A++dI  +e+++e+p+++il+ +++++ ++                                    y++ lp++  +n  ++++ kel  + +s
  CCD26265.1  87 GRCIIASKDIDTDELLFEIPRSSILNVTTSQLCVDFphitgklmelsqwdsliicmmyemkvlqhesrwsSYFNVLPSSeSLNtlMYWNdKELSFLTPS 185
                 9*********************************************************************99999998863336799989********* PP

                 SSHHHHHHHHHHHHHHHHHHTHHHHHHHXTTTSX....XXHCCCCCHCCCHEEEETEEEEEECCC...................GTTGGGCE...EXSS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxx...................xxxxxxxx...xxxx RF
         SET  62 tllqklakdqkqaekedtdaalkasskaesdlna....skpeagafsaiagysidaralksgnga...................gplarflN...HsCd 134
                   +++ +k +++ ++++  + ++++ +     +      +++ +  s i+ ys+d +  + ++                     +pla+ lN   H C 
  CCD26265.1 186 LVVNRVGKGDAETMYRRILDTINEFNEDILTEKLgsisWEEFLYIPSIIMAYSFDVEIKNDDDENegdeefdekeeepellksmIPLADTLNadtHKC- 283
                 ***********************99988888874455566666666*******9955555555555666677777788899***********999999. PP

                 SSEEEEEEEETTSSEEEEEESSXBXTTEEEEEXTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET 135 pNcnltvqnvlrgprvavfAtrdIkkGeEltidYg 169
                  N+nlt++     + + + A+++IkkGe+++++Yg
  CCD26265.1 284 -NANLTYDK----DSLKMLAIKPIKKGEQVYNTYG 313
                 .77669998....*********************8 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.32
                 HTTSSHHHHHHHHHHHHHHHHHHTHHHHHHHX CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         SET  59 sastllqklakdqkqaekedtdaalkasskae 90 
                    ++l+k + +++q + e++ a++++s ++ 
  CCD26265.1 435 LELGKLTKKCVTIQQTILEKRLAEYNVSKEMT 466
                 33344444444444444444444444433332 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.038   1.7e+02      57      69 ..     218     230 ..     193     231 .. 0.84
   2 ?    8.9   0.2   0.00045         2      27      62 ..     358     393 ..     334     395 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.038
   EF-hand_7  57 kdGvisfdEFlkl 69 
                 k G+is++EFl++
  CCD26265.1 218 KLGSISWEEFLYI 230
                 569*******985 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00045
   EF-hand_7  27 llrkifqgagegsklsdeelellfkefDtdkdGvis 62 
                 l+ +i++  +e++++ +ee++ +++   +++d +is
  CCD26265.1 358 LVSRIIDILREDEDIQEEEIDIVMDSYELNCDNSIS 393
                 677888888************************998 PP

>> Mrpl_C  54S ribosomal protein L8 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.6    0.0015       6.8      34      79 ..     420     465 ..     412     470 .. 0.90
   2 ?    6.2   1.3    0.0027        12      28      98 ..     464     534 ..     459     540 .] 0.70

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0015
      Mrpl_C  34 yaplTlqnLkKmlkfkskeqllkeilavrkflkeeqelewdeeeek 79 
                 +++lT + LkK ++  +  +l+k   ++++ ++e++ +e++ ++e+
  CCD26265.1 420 LTNLTKRTLKKCIQLLELGKLTKKCVTIQQTILEKRLAEYNVSKEM 465
                 6789999*****************************9999998886 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0027
      Mrpl_C  28 eskakayaplTlqnLkKmlkfkskeqllkeilavrkflkeeqelewdeeeekeavkalldqvakktlpkkk 98 
                 e ++ +  ++ + n++K+ +++++e l +e +a+ k l   ++l+   + ek + + l++++ + t++++ 
  CCD26265.1 464 EMTKPEADDFNIGNVEKLRHKMANEILINEYQAISKCLAVLKGLTKTIDDEKLLKNVLKRKIDEDTKTSRP 534
                 5556667788899*************************999999844444444444455666444444433 PP

>> ANAPC2  Anaphase promoting complex (APC) subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00014      0.62      10      54 ..      32      73 ..      30      75 .. 0.87
   2 ?   -2.6   0.1       1.8   8.2e+03      17      27 ..     140     150 ..     139     156 .. 0.78
   3 ?   -3.0   0.1       2.4   1.1e+04       6      23 ..     420     437 ..     420     458 .. 0.69
   4 ?   -1.9   0.0       1.1   5.1e+03      35      49 ..     514     528 ..     501     529 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00014
      ANAPC2 10 gslpleRIhsmLkmfvpkdegydisdeeLkefLdelvkegkLels 54
                +sl  ++I+ +Lk+++++d+     +e+ ++fL+ l  +gk+++s
  CCD26265.1 32 ESLRCDQIKIILKTTMITDS---LFNEQTESFLSWLTTDGKVTVS 73
                57999***********6654...566999*************987 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 1.8
      ANAPC2  17 IhsmLkmfvpk 27 
                 I++m++m v++
  CCD26265.1 140 ICMMYEMKVLQ 150
                 89*****9976 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2.4
      ANAPC2   6 LtNlgslpleRIhsmLkm 23 
                 LtNl + +l++  ++L++
  CCD26265.1 420 LTNLTKRTLKKCIQLLEL 437
                 789888888888877766 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 1.1
      ANAPC2  35 deeLkefLdelvkeg 49 
                 ++ Lk++L+++++e+
  CCD26265.1 514 EKLLKNVLKRKIDED 528
                 456899999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       998  (0.055664); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.29s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3710.13
//
Query:       CCD26266.1  [L=613]
Description: hypothetical protein NDAI_0H00920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-75  254.3  10.5    2.4e-75  253.8  10.5    1.2  1  Pex24p    Integral peroxisomal membrane peroxin


Domain annotation for each model (and alignments):
>> Pex24p  Integral peroxisomal membrane peroxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.8  10.5   1.3e-79   2.4e-75       1     365 [.     120     477 ..     120     478 .. 0.96

  Alignments for each domain:
  == domain 1  score: 253.8 bits;  conditional E-value: 1.3e-79
      Pex24p   1 palsspllssnppqlssrLakifplllildkvlkiltWtnpdktlsfllvytficlvpylelvvlplllllfvvmvpaylyrh.plrksslikkeeskn 98 
                 p+ls+p++s+n+++++srL+ +f ++   d+++ki++Wtnp +tls+l++ytf++++p+  + v+p+l+++f++mvp+y+y+h p++++ l     s+n
  CCD26266.1 120 PGLSVPIMSRNFIAMNSRLSIPFIII---DEIIKIINWTNPYYTLSILFLYTFLICKPVTTIFVTPILYIVFGIMVPQYIYLHtPDPNPLL-----SNN 210
                 679***********************...**************************************************************.....999 PP

      Pex24p  99 estsegptldea.........skeivlnLrdlqnkmedllnpidalekflkelagfkdenlstllfltllltpililll.....srlipw.rlillvlg 182
                  ++s+gp+l++          s+e++lnL+dlqn+m +++  +d+++ +l ++a+fk+ ++s++ f++ll + i+++l+       l+p  +l+l+++g
  CCD26266.1 211 MTPSQGPPLRKVelpkpvpelSQEFLLNLTDLQNHMVLYVYLYDFIDYILCKFAFFKNGQVSSFAFIVLLSIGIFNFLFienlfQFLLPFiKLTLVLTG 309
                 **********98***********************************************************************65555658******** PP

      Pex24p 183 .ailltyHpsvkkvllrllwrlkivrlvvkyltgkelkkakskekkeelikelekketadiildespetrkpkrftveifEnqrrwllgkgWtsslfss 280
                  +i    Hp+ ++ ll+              l+++e++      k  +++++ e k+++ ++++e++e++      v+i+E+q++   +k+W+   f+s
  CCD26266.1 310 wIISAQLHPTNRDKLLS-------------KLNSEETR-----LKILSISNKYEHKINEYLKFVEARENK-----LVYIYEIQKYIPKHKEWHLIGFTS 385
                 99999************.............99******.....78999**********************.....************************ PP

      Pex24p 281 erydwtdetrkalkesps.gvdhledvkpPedWkWde......kkkWrlDlepdewvk.........eeeekkGWvYddnkwkepst.edslsketRRR 362
                 + +++++  r+++ +++  + ++l+d+kpP +W+W        +++W++Dl+p++wv          ++e+k  WvYd        +   + ++ +RRR
  CCD26266.1 386 DDFSLLSNLRINGIRIEDvTLKSLDDIKPPVEWEWLSnrkknhASNWTIDLNPEKWVGdryiqyveiDSETK--WVYD--------VdLTGERGHYRRR 474
                 ***************88856799*************999999999********************9989999..****........7799********* PP

      Pex24p 363 rwi 365
                  w+
  CCD26266.1 475 MWT 477
                 **7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       918  (0.051202); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 4380.83
//
Query:       CCD26267.1  [L=203]
Description: hypothetical protein NDAI_0H00930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.1e-11   44.8   0.2    1.1e-11   44.8   0.2    2.2  2  Rpr2           RNAse P Rpr2/Rpp21/SNM1 subunit domain
  ------ inclusion threshold ------
      0.052   13.6   0.1       0.11   12.5   0.1    1.5  1  DZR            Double zinc ribbon
       0.23   11.2   0.2       0.23   11.2   0.2    2.7  2  zinc_ribbon_2  zinc-ribbon domain


Domain annotation for each model (and alignments):
>> Rpr2  RNAse P Rpr2/Rpp21/SNM1 subunit domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.2   1.9e-15   1.1e-11       2      90 .]      18     110 ..      17     110 .. 0.83
   2 ?    0.6   1.0      0.12   7.2e+02      14      40 ..     168     194 ..     144     201 .. 0.71

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 1.9e-15
                 HHHHHHHHH.HHHHH-HHHHHHHHHHHHHHHHHCT---SSTC...CCTB-TTT--B--CTTTEEEEE..E-SSS-E.........EEEEETTTT CS
        Rpr2   2 lnfLyqaahlqlaeaspalsrylakqlrevskkaqlrlppsv...krtvCkkCgsvlipgvtcsvrv..enkskkkkkkkkkadvlvvtClaCg 90 
                 ++ L+ + ++ l + +pals  ++k++ +  k+++l+lp s+   ++++C +Cg+v i + + ++++  ++k +++  ++++ +vl+++Cl+C+
  CCD26267.1  18 YDLLHLLPSM-LPTGNPALSGLYLKSFYNGVKRYKLQLPSSItnsNEKFCGSCGTVRIINRNLEMEMvvREKMQENDDSSSQIKVLKYKCLNCN 110
                 5678888888.9999***************************99999*************99999884433333334444455999*******6 PP

  == domain 2  score: 0.6 bits;  conditional E-value: 0.12
                 HHH-HHHHHHHHHHHHHHHHHCT---S CS
        Rpr2  14 aeaspalsrylakqlrevskkaqlrlp 40 
                 ++++++ls+ l+k+ +e sk++ ++l+
  CCD26267.1 168 KRKMNSLSNLLSKKNQEKSKQKSTSLS 194
                 455666777777777777666666665 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.1   1.9e-05      0.11       9      36 ..      60     111 ..      56     116 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.9e-05
         DZR   9 ppdarfCseCgtk..lkavaa........................edrCpsCge 36 
                 +++ +fC+ Cgt   +    +                        +++C +C+ 
  CCD26267.1  60 NSNEKFCGSCGTVriI--NRNlememvvrekmqenddsssqikvlKYKCLNCNF 111
                 67789*******9542..2235678889999999999******9999****985 PP

>> zinc_ribbon_2  zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   3.9e-05      0.23      11      21 ..      61      71 ..      57      72 .. 0.88
   2 ?    0.9   1.2     0.068   4.1e+02       1      10 [.     105     114 ..     105     114 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.9e-05
  zinc_ribbon_2 11 dnakFCpyCGt 21
                    n+kFC  CGt
     CCD26267.1 61 SNEKFCGSCGT 71
                   69********8 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.068
  zinc_ribbon_2   1 fCpnCGaelq 10 
                    +C nC  e++
     CCD26267.1 105 KCLNCNFENE 114
                    799**99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2307  (0.128674); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1467.24
//
Query:       CCD26268.1  [L=685]
Description: hypothetical protein NDAI_0H00940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.1e-76  256.2   0.1    5.4e-76  255.4   0.1    1.4  1  Pkinase          Protein kinase domain
    8.1e-54  181.1   5.9    4.2e-28   98.2   0.1    3.4  3  AdenylateSensor  Adenylate sensor of SNF1-like protein kinase
    2.3e-38  132.0   0.0    3.9e-38  131.2   0.0    1.3  1  Pkinase_Tyr      Protein tyrosine kinase
    1.1e-19   70.2   1.5    1.1e-19   70.2   1.5    2.3  2  UBA_2            Ubiquitin associated domain (UBA)
    1.6e-09   37.5   0.0    2.6e-09   36.8   0.0    1.5  1  Kinase-like      Kinase-like
    9.3e-06   25.4   1.0    2.3e-05   24.1   1.0    1.6  1  RIO1             RIO1 family
    0.00026   20.0   0.4    0.00026   20.0   0.4    2.2  2  Haspin_kinase    Haspin like kinase domain
     0.0033   16.8   0.2     0.0066   15.8   0.2    1.5  1  Kdo              Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.035   14.0   0.1       0.74    9.7   0.2    2.2  2  APH              Phosphotransferase enzyme family
       0.95    9.8   4.9        8.2    6.8   0.2    3.2  3  NLRC4_HD         NLRC4 helical domain


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.4   0.1     3e-79   5.4e-76       1     264 []      61     312 ..      61     312 .. 0.92

  Alignments for each domain:
  == domain 1  score: 255.4 bits;  conditional E-value: 3e-79
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHC.HCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HH CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkek.akkkkekkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslsee 98 
                 y+ +++lGeGsfGkV  a++ +tg++vA+K+i+k+  ak++++ ++ rEi++l+ l+hp+i++ly+v+++kde+++v+ey+ ++ l+d++ ++ ++se+
  CCD26268.1  61 YQIVKTLGEGSFGKVKLAYHMTTGQKVALKIINKKVlAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVMEYAGNE-LFDYIVQRDKMSEN 158
                 78899***************************998724555569*************************************965.************** PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHHHHHHHHHHHHSS-S CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWslGvilyelltgkpp 196
                 ea+++++qi++++ey+H+++i+HrDlKpeN+L+de+ ++Ki+DFGl++ ++ ++ l++ +g+++Y APEv++++ y +++vDvWs Gvily +l+++ p
  CCD26268.1 159 EARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYaGPEVDVWSSGVILYVMLCRRLP 257
                 ***********************************************************************999999********************** PP

                 TTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 197 fsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 f +e+    + k++++              +  ++ +s+ a +l+k++l ++p +R++++e++q++++
  CCD26268.1 258 FDDESIPVLF-KNINN------------GVYTIPKFLSQGASSLIKRMLIVNPLNRISISEIMQDEWF 312
                 **33333322.23332............345566778******************************8 PP

>> AdenylateSensor  Adenylate sensor of SNF1-like protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.78   1.4e+03      61     103 ..     307     351 ..     296     355 .. 0.73
   2 !   98.2   0.1   2.3e-31   4.2e-28       1      62 [.     533     594 ..     533     603 .. 0.95
   3 !   83.7   0.2     7e-27   1.3e-23      51     117 .]     610     678 ..     597     678 .. 0.83

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.78
                      EEEEEEEEETTEEEE..EEEEEEEEESSSSSTTTTTSSTTS---S CS
  AdenylateSensor  61 leiqlfqlepnnylv..dfkfdGwessssekeetaeededevssa 103
                      ++   f++    yl+  d++ +  e++++++++ +e+++dev ++
       CCD26268.1 307 MQDEWFKVDLPEYLLsqDLRNQAEEQQQQQQKQGKESETDEVNTS 351
                      666678888888887557888887887777777777777777654 PP

  == domain 2  score: 98.2 bits;  conditional E-value: 2.3e-31
                      SEEESEEEES-HHHHHHHHHHHHHHTTEEE-----GGGGEEEEEEE-HHHHHTT--EEEEEE CS
  AdenylateSensor   1 rWhfGirsrsypldvlgeiyralknlGaewakPseeelwtikvrwkykkaekenkedlmkle 62 
                      +WhfGirsrsypldv+geiy alknlGaewa+Psee+lwti+vrwky++ + +n++  m+++
       CCD26268.1 533 KWHFGIRSRSYPLDVMGEIYIALKNLGAEWARPSEEDLWTIRVRWKYDNGSINNNNGNMTMI 594
                      8**************************************************99999888775 PP

  == domain 3  score: 83.7 bits;  conditional E-value: 7e-27
                      HHTT--EEEEEEEEEEEEETTEEEEEEEEEEEEESSSSS..TTTTTSSTTS---STTHHHHHHHHHHHH CS
  AdenylateSensor  51 ekenkedlmkleiqlfqlepnnylvdfkfdGwessssek..eetaeededevssayPflhlatrlilel 117
                      +++   dlmk++iqlfq+e+nnylvdfkfdGwe+s+++   +++ +ede++++sayPflhl+trli+el
       CCD26268.1 610 SNDAIPDLMKMVIQLFQIETNNYLVDFKFDGWENSNGQVvtNSNISEDEMSTFSAYPFLHLTTRLIMEL 678
                      2334458***************************9998844666677788888**************98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.2   0.0   2.2e-41   3.9e-38       3     257 ..      63     308 ..      61     309 .. 0.88

  Alignments for each domain:
  == domain 1  score: 131.2 bits;  conditional E-value: 2.2e-41
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTT..SSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkee..ateeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  + k+lGeG+fGkV  ++      ++ +kVa+K+++++  a+++ + ++ +e++ ++ l+hp+i+kl+ v+ +++++++v+ey+  ++L +++ ++  +
   CCD26268.1  63 IVKTLGEGSFGKVKLAYHM----TTGQKVALKIINKKvlAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVMEYAG-NELFDYIVQR--D 153
                  789*************999....88999*****97761144455889999********************************75.6899999998..9 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEE.HHHHHHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkft.sksDvWsfGvll 195
                  k++ ++  +f +q+ +++ey +++k+vHrdl   N Ll+e+  vki+DfGL++ + +d +   k+++  + ++ apE+++ k +   + DvWs Gv+l
   CCD26268.1 154 KMSENEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIM-TDGNFL-KTSC-GSPNYAAPEVISGKLYAgPEVDVWSSGVIL 248
                  9***************************************************987.444444.4444.4569***********87369********** PP

                  HHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 196 wEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselve 257
                  + +++  + p+ + +   +++++++g   + p+  ++   +l+k+ +  +p +R ++se+++
   CCD26268.1 249 YVMLC-RRLPFDDESIPVLFKNINNGV-YTIPKFLSQGASSLIKRMLIVNPLNRISISEIMQ 308
                  *8888.799999999998888888775.67899999999***************99999986 PP

>> UBA_2  Ubiquitin associated domain (UBA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       2.5   4.5e+03      17      27 ..     131     141 ..     130     159 .. 0.60
   2 !   70.2   1.5   6.4e-23   1.1e-19       1      46 []     367     412 ..     367     412 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.5
       UBA_2  17 kdeIieaLeka 27 
                 kdeIi ++e a
  CCD26268.1 131 KDEIIMVMEYA 141
                 67776665543 PP

  == domain 2  score: 70.2 bits;  conditional E-value: 6.4e-23
       UBA_2   1 IdedvvsaLsktMGYdkdeIieaLekaekskssneIkDAYlLmkEN 46 
                 Id+ +v++LsktMGY+k+eI+e+Le++e++++ neI+DAY+L+k+N
  CCD26268.1 367 IDDALVTTLSKTMGYEKEEIYESLESSEDTPAYNEIRDAYMLIKDN 412
                 9********************************************9 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.5e-12   2.6e-09     130     254 ..     145     262 ..      77     300 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.8 bits;  conditional E-value: 1.5e-12
  Kinase-like 130 vlqkrsethkkletiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggf..taLvragtkvvlsevekgfaPpEllgsrggytrknkt 225
                  + +  ++++k  e+ ar     q+i  + + + + +vh +++++nlllde+  +++ +f  ++++++g+  + s     +a pE+++         k+
   CCD26268.1 145 LFDYIVQRDKMSENEARRFF-QQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFglSNIMTDGNFLKTSCGSPNYAAPEVISG--------KL 233
                  44555667888889999999.89**********************************9844689******9999999*********98........45 PP

  Kinase-like 226 kmthkldaWqlGlviyriwclklPltlat 254
                      ++d+W  G+  y + c+ lP++   
   CCD26268.1 234 YAGPEVDVWSSGVILYVMLCRRLPFDDES 262
                  56789********************9754 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   1.0   1.3e-08   2.3e-05      54     150 ..     105     203 ..      76     212 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 1.3e-08
                 HHHHHHHHHHHHHHTT.--S--EEEEETTEE.EEE--EETTEEGGBHHHCG-HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--G CS
        RIO1  54 waekEfrnLkrleeag.vpvPkpielkrhvl.vmefigedgvaapklkdveeeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDv 149
                   e+E+++L+ l++ + ++  ++i+ k++++ vme+ g++ + +   +d  +e+ea++ +++++++++    ++++vH DL   N+l+de  +v i D+
  CCD26268.1 105 RIEREISYLRLLRHPHiIKLYDVIKSKDEIImVMEYAGNELFDYIVQRDKMSENEARRFFQQIISAVEYCH-RHKIVHRDLKPENLLLDEHlNVKIADF 202
                 5799*******99877699*******9987549*****5555444444444699***********877666.******************999999998 PP

                 T CS
        RIO1 150 s 150
                 +
  CCD26268.1 203 G 203
                 6 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.4   1.5e-07   0.00026     177     257 ..     126     208 ..      60     217 .. 0.76
   2 ?   -5.3   3.8       7.3   1.3e+04      23      51 ..     457     488 ..     434     536 .. 0.46

  Alignments for each domain:
  == domain 1  score: 20.0 bits;  conditional E-value: 1.5e-07
  Haspin_kinase 177 dfyseqqlflvlllkdkGtdLeev....klkswkqalsifwqivkiLyvaEtkfeFEHRdLhldniLvdknlnvtlidlklsRle 257
                    d+ ++ +  ++++++++G++L          s ++a + f qi++ +     + +  HRdL+ +n L+d++lnv + d+ ls + 
     CCD26268.1 126 DVIKS-KDEIIMVMEYAGNELFDYivqrDKMSENEARRFFQQIISAVEYC-HRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIM 208
                    44443.34578899******987655435556678888888887776554.6899************************999875 PP

  == domain 2  score: -5.3 bits;  conditional E-value: 7.3
  Haspin_kinase  23 tshssLqkf...sssssessssnkislPvkdq 51 
                    +s ss  k       ss +++ ++ + P  dq
     CCD26268.1 457 SSPSSSSKKhskRTASSVTQQRTYHQAPYMDQ 488
                    22222221112211222222222233333333 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   3.7e-06    0.0066     104     155 ..     144     195 ..      85     210 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 3.7e-06
         Kdo 104 dLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqee 155
                 +L d++ + ++++e+  r+ ++++  +++  hr ++ H+dl + n+ll+++ 
  CCD26268.1 144 ELFDYIVQRDKMSENEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHL 195
                 45566666688*************************************9875 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.12   2.1e+02      13     101 ..      78     170 ..      71     178 .. 0.71
   2 ?    9.7   0.2   0.00041      0.74     167     195 ..     178     204 ..     175     209 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.12
                 EEEEEETT--EEEEEE-TT.....S-HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS.....HHHHHHHHHHHHHHHHH CS
         APH  13 tylvttpagryvlrrnppa.....raaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr.....klsaaqlpellealgef 101
                  y+ tt++ +++l++++++     + + +i+re  +lrlL+   +   ++++  ++ +ei +   ++ey + + ++      k+s++++++++++++++
  CCD26268.1  78 AYHMTTGQ-KVALKIINKKvlaksDMQGRIEREISYLRLLRHPHI--IKLYDVIKSKDEIIM---VMEYAGNELFDYivqrdKMSENEARRFFQQIISA 170
                 68888854.788888777766656777888899999999996655..577777678888885...7777544444447777788888888888888776 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00041
                 EEE-SS-SGGGEEEC..TTEEEEE---TT CS
         APH 167 vllHgDlhpgNllvdpddgrvtGviDfed 195
                  ++H+Dl+p Nll+d++ +    + Df++
  CCD26268.1 178 KIVHRDLKPENLLLDEHLNVK--IADFGL 204
                 589************444443..666665 PP

>> NLRC4_HD  NLRC4 helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.043        78      24      43 ..     211     230 ..     204     233 .. 0.91
   2 ?   -4.0   0.6        10   1.8e+04      54      71 ..     324     341 ..     321     355 .. 0.53
   3 ?    6.8   0.2    0.0046       8.2      50     103 ..     586     638 ..     583     640 .. 0.90

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.043
                 HHHHHHCCC--TTCHHHHHH CS
    NLRC4_HD  24 snlLlYtcgsstkAgpkivs 43 
                  n+L+ +cgs   A+p+++s
  CCD26268.1 211 GNFLKTSCGSPNYAAPEVIS 230
                 59****************97 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 10
                 HHCHCHT--SGGCCHCHH CS
    NLRC4_HD  54 slenlsendeylkhtpel 71 
                 +l n++e++++ ++++  
  CCD26268.1 324 DLRNQAEEQQQQQQKQGK 341
                 456666555554444333 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0046
                 SSSTHHCHCHT--SGGCCHCHHHHHHH.HHHHHHHH-HHHHHHHHHHHHHHHHH CS
    NLRC4_HD  50 dekeslenlsendeylkhtpelellkailirslvelspelylssvskslLslal 103
                 ++++ +  +s+n++++++t+ ++  +   i  l++++++l++  + ++l ++ +
  CCD26268.1 586 NNNGNMTMISNNSNNINSTNTMTSSND-AIPDLMKMVIQLFQIETNNYLVDFKF 638
                 67899999****************999.*************9999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1933  (0.107814); expected 358.6 (0.02)
Passed bias filter:                      509  (0.0283898); expected 358.6 (0.02)
Passed Vit filter:                        69  (0.00384851); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.76u 0.27s 00:00:01.03 Elapsed: 00:00:00.43
# Mc/sec: 4746.34
//
Query:       CCD26269.1  [L=236]
Description: hypothetical protein NDAI_0H00950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.031   14.9   0.0      0.058   14.0   0.0    1.5  1  DUF2470   Protein of unknown function (DUF2470)


Domain annotation for each model (and alignments):
>> DUF2470  Protein of unknown function (DUF2470)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   3.3e-06     0.058      13      62 ..      23      76 ..      19      90 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 3.3e-06
                HHHHHHHHHHCST-TTCCEE..EEEEE-SSEEEEEE.C......CEEEEEE-SS CS
     DUF2470 13 addlllylrhygkvkeaksa..rmtdidldgltlrl.gakags.ektvripFdp 62
                + +l ++l+++g ++ +k +  ++++id+d++t+++ ++++ +   +v ip+d 
  CCD26269.1 23 QVALEDILEVFGCIPTLKVSgiKLKEIDSDSFTIQYrYNDDLEhPMDVLIPIDN 76
                56899*******88888666568************9733332357788888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1778.91
//
Query:       CCD26270.1  [L=855]
Description: hypothetical protein NDAI_0H00960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.56   10.4   3.9        0.4   10.9   0.5    2.4  2  BSMAP     Brain specific membrane anchored protein


Domain annotation for each model (and alignments):
>> BSMAP  Brain specific membrane anchored protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.5   2.2e-05       0.4      82     149 ..     256     324 ..     217     364 .. 0.67
   2 ?   -0.7   0.2     0.079   1.4e+03     108     166 ..     525     565 ..     451     598 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 2.2e-05
       BSMAP  82 divssaqsfisstwtfy.lqaDdgkvvvfqsepeielflseaedtklgpkdkkakvkkkkeeekeklks 149
                 ++  + +  +s  wt + + +D+ +vv++ + p+++ +ls++++ ++ + +++++ ++ ++++++++ s
  CCD26270.1 256 HLSGRRHTWVSLDWTIKqFAQDTDNVVIVANIPKMRSVLSSSTNARSRSMSRSRSRSRMRQQQQQRSPS 324
                 555667788899999987899****************98887666653333333333333333332222 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.079
       BSMAP 108 vfqsepeielflseaedtklgpkdkkakvkkkkeeekeklksskaeeeqpeedflgcls 166
                 + q++ + +++++++ +++  +++++++ ++++                 +ed++++ s
  CCD26270.1 525 ISQEQRRRDAMYDSTDTDEY-ETSDDDDDSTNE-----------------NEDQISINS 565
                 44444444444333322221.111111111111.................112222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1580  (0.0881254); expected 358.6 (0.02)
Passed bias filter:                      482  (0.0268838); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 6036.32
//
Query:       CCD26271.1  [L=303]
Description: hypothetical protein NDAI_0H00970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-49  167.4   0.0    3.1e-49  166.5   0.0    1.5  1  TRAPP     Transport protein particle (TRAPP) component
  ------ inclusion threshold ------
       0.23   10.8   5.2       0.36   10.2   5.2    1.2  1  SelP_N    Selenoprotein P, N terminal region


Domain annotation for each model (and alignments):
>> TRAPP  Transport protein particle (TRAPP) component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.5   0.0   3.4e-53   3.1e-49       1     146 []      44     292 ..      44     292 .. 0.96

  Alignments for each domain:
  == domain 1  score: 166.5 bits;  conditional E-value: 3.4e-53
       TRAPP   1 fafllgelvsylqrdskdveevekrLekmGyrvGlrllelllarerp.................................................... 47 
                 ++fl++e++syl+++s++++e+ek+L+++G ++Glrllell++r++                                                     
  CCD26271.1  44 MTFLYQEMISYLHQSSTTMAEFEKKLSNYGESIGLRLLELLNFRASLspksfidssssattttatttttsnitttsattgtgtakiisenrtrskstts 142
                 79******************************************8734799999999****************************************** PP

       TRAPP  48 ...............................................retdilevlkfickdlWkllfgkqidnlktn..hrgeyvltdnefpltrfve 97 
                                                                r+++il++l+fi+ +lW++lf++ +d+l+++  + +ey+++dn+++lt+f+ 
  CCD26271.1 143 klandtrtssnsalrdhnthhhhhhhtlereknldvslckyitkmrrRDLKILDILQFIHGTLWSYLFNHVSDDLVKSseRANEYMIIDNSPVLTQFIP 241
                 *********************************************9999*****************************888899*************97 PP

       TRAPP  98 lpke..lsylaflcGiirGaLenlgfpakVtahelpsdelrgrttfeikvk 146
                 ++++  ls+++f+cGii+G+L ++gfp++V++h++++de+++r +++i+++
  CCD26271.1 242 NNNNasLSCNYFVCGIIKGFLLSAGFPCSVNPHTMSTDEFDERLVYLIQFD 292
                 77777777*****************************************96 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   5.2     4e-05      0.36     149     211 ..     111     173 ..      85     185 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 4e-05
      SelP_N 149 kCGnCslesseaeeeckevtkaaeekpaeaeektehehahshkqghkhhekhghhHkekeels 211
                 +  n + +s+++   + +++++++++++++ +k  +++  s + + + h++h+hhH+++ e++
  CCD26271.1 111 TTSNITTTSATTGTGTAKIISENRTRSKSTTSKLANDTRTSSNSALRDHNTHHHHHHHTLERE 173
                 445556666666666666666666666666666666666555455555555555555533333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1504  (0.0838864); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 2274.13
//
Query:       CCD26272.1  [L=136]
Description: hypothetical protein NDAI_0H00980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.5e-37  126.0   7.9    8.4e-37  125.4   7.9    1.3  1  Ribosomal_L27e  Ribosomal L27e protein family
    0.00084   19.2   2.0     0.0016   18.3   2.0    1.5  1  KOW             KOW motif


Domain annotation for each model (and alignments):
>> Ribosomal_L27e  Ribosomal L27e protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   7.9   9.3e-41   8.4e-37       1      85 []      52     136 .]      52     136 .] 1.00

  Alignments for each domain:
  == domain 1  score: 125.4 bits;  conditional E-value: 9.3e-41
  Ribosomal_L27e   1 kVtkkmskkkiakrskikpFvKvvnynhlmpTRYtvdvedlkelvkkealkdpakrkeakkevkkkfeeryksgknkwffkkLrF 85 
                     kVtkk ++kk+akr+kikpF+Kvvnynhl+pTRYt+dve++k++v++e++++p++r+eakk +kk+feer+++gkn+wff+kLrF
      CCD26272.1  52 KVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVESFKNVVSTETFEEPSQREEAKKVIKKAFEERHQAGKNQWFFSKLRF 136
                     9***********************************************************************************9 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   2.0   1.8e-07    0.0016       2      25 ..       8      31 ..       7      43 .. 0.90

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.8e-07
                TSEEEESSSTTTTCEEEEEEEETT CS
         KOW  2 GdhVkVvsGphkGktGkVvkvdqh 25
                G++  Vv+G+++Gk+ ++vk  ++
  CCD26272.1  8 GKVAVVVRGRYAGKKVVIVKPHDE 31
                999****************97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       784  (0.043728); expected 358.6 (0.02)
Passed bias filter:                      440  (0.0245412); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1040.31
//
Query:       CCD26273.1  [L=592]
Description: hypothetical protein NDAI_0H00990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-08   34.7   0.0      0.009   15.9   0.0    3.3  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     1e-06     0.018      47      89 ..     287     346 ..     167     353 .. 0.76
   2 !   15.9   0.0     5e-07     0.009       4      62 ..     366     425 ..     363     444 .. 0.83
   3 ?   -2.7   0.0      0.33   5.9e+03      62      75 ..     556     569 ..     520     576 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1e-06
                 S.................HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr  47 a.................ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetl 89 
                 +                 ++d+l +i+ +eG+ gl+r +  ++l ++ + +++ +l + +
  CCD26273.1 287 NkrislvdpnvitplslnTIDILNSIIDTEGIVGLWRANHTTFLLNFLKISINSWLVNLI 346
                 1345666777777777889****************************9999998877666 PP

  == domain 2  score: 15.9 bits;  conditional E-value: 5e-07
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHH.HHHHHHHH CS
   Mito_carr   4 svlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkk.iykeeGlr 62 
                 s+++ +la +++ +++ l+  P+d++K +l + + ++ +++++++++++k+  ++++G +
  CCD26273.1 366 SFQHLILANLISNILTNLILIPIDLIKLKLIVTSINTDNKNKRSLRHMIKNwSWRNDGPK 425
                 5667778899**********************9999998888889999998346788765 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.33
                 HGGGTTHHHHHHHH CS
   Mito_carr  62 rglyrGllpnllrv 75 
                 + l+ G+ ++l+ v
  CCD26273.1 556 KDLWNGWKISLISV 569
                 56999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       824  (0.0459591); expected 358.6 (0.02)
Passed bias filter:                      378  (0.0210832); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 4016.96
//
Query:       CCD26274.1  [L=165]
Description: hypothetical protein NDAI_0H01000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-15   56.6   0.0    2.1e-15   56.1   0.0    1.2  1  Dpy-30    Dpy-30 motif


Domain annotation for each model (and alignments):
>> Dpy-30  Dpy-30 motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   1.2e-19   2.1e-15       2      41 ..     114     153 ..     113     154 .. 0.96

  Alignments for each domain:
  == domain 1  score: 56.1 bits;  conditional E-value: 1.2e-19
                 HHHHHHHHTHHHHHHHHHHHHHH--SSHHHHHHHHHHHHG CS
      Dpy-30   2 arkYLnktvaPiLlqGLtelAkeRPeDPieyLAeYLlknk 41 
                 +rkY+n +v+P Ll+G++ +A+e+PeDP+++L+eYL++++
  CCD26274.1 114 TRKYINRYVTPFLLAGMKKIAVEKPEDPLRVLGEYLIEQS 153
                 8************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1347  (0.0751297); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 1236.56
//
Query:       CCD26275.1  [L=241]
Description: hypothetical protein NDAI_0H01010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     0.0007   17.9   2.0     0.0007   17.9   2.0    2.2  2  EzrA             Septation ring formation regulator, EzrA
     0.0011   17.9   7.9     0.0021   17.0   1.1    2.1  2  Spc7             Spc7 kinetochore protein
     0.0014   18.9   9.1      0.057   13.7   5.3    3.3  3  DUF948           Bacterial protein of unknown function (DUF94
     0.0014   18.6   0.1     0.0014   18.6   0.1    3.1  3  SNARE            SNARE domain
     0.0022   18.1   2.5       0.01   15.9   0.2    2.3  2  DUF892           Domain of unknown function (DUF892)
     0.0026   18.3   8.1      0.013   16.0   4.1    3.0  3  Syntaxin-6_N     Syntaxin 6, N-terminal
     0.0027   17.0   2.0      0.089   12.0   1.0    2.1  2  TMPIT            TMPIT-like protein
     0.0029   17.6   6.6      0.078   12.9   0.2    2.0  2  CEP63            Centrosomal protein of 63 kDa
     0.0031   17.4   7.4      0.024   14.5   0.1    3.1  3  Sec20            Sec20
     0.0035   17.1   3.4        1.2    8.8   0.2    2.9  3  DUF745           Protein of unknown function (DUF745)
     0.0054   17.0  11.2        1.1    9.6   0.2    3.5  3  KxDL             Uncharacterized conserved protein
     0.0062   15.6   2.9       0.35    9.8   0.1    2.2  2  Perilipin        Perilipin family
     0.0094   16.2   5.0       0.85    9.9   0.2    2.5  2  THOC7            Tho complex subunit 7
  ------ inclusion threshold ------
      0.013   15.4   0.2      0.039   13.9   0.0    1.9  2  Microtub_bd      Microtubule binding
      0.014   15.5  11.0        1.3    9.1   0.2    2.7  2  DUF1664          Protein of unknown function (DUF1664)
      0.015   15.2   9.1       0.58   10.0   3.2    2.6  2  SKA1             Spindle and kinetochore-associated protein 1
      0.017   15.7   4.2       0.25   11.9   2.6    2.7  2  DUF2408          Protein of unknown function (DUF2408)
      0.021   12.8   7.6      0.069   11.1   0.7    2.1  2  Prominin         Prominin
      0.022   13.5   6.6       0.45    9.1   1.1    2.5  2  Tweety           Tweety
      0.033   14.4   5.7          8    6.7   0.1    3.1  3  FliJ             Flagellar FliJ protein
      0.033   14.3  15.5        1.5    8.9   1.1    3.1  3  UPF0242          Uncharacterised protein family (UPF0242) N-t
       0.04   12.7   2.1      0.081   11.7   0.0    1.9  2  DUF2207          Predicted membrane protein (DUF2207)
      0.051   13.6   0.1        7.7    6.6   0.0    2.4  2  MHC2-interact    CLIP, MHC2 interacting
      0.068   13.8  15.4          9    7.0   0.9    4.4  4  SlyX             SlyX
      0.075   12.3   0.2      0.075   12.3   0.2    2.5  2  MPS2             Monopolar spindle protein 2
      0.083   13.4   1.2        2.6    8.7   1.2    3.0  1  YtxH             YtxH-like protein
      0.085   12.9   6.0        1.3    9.0   0.2    2.6  2  RIG-I_C          RIG-I receptor C-terminal domain
      0.086   12.9   7.7       0.63   10.1   5.8    2.8  2  ApoLp-III        Apolipophorin-III precursor (apoLp-III)
       0.09   13.1   9.3       0.32   11.3   0.6    3.2  3  DUF5082          Domain of unknown function (DUF5082)
      0.098   13.1   9.2        3.9    7.9   1.9    3.5  3  FlaC_arch        Flagella accessory protein C (FlaC)
      0.098   11.8   8.4       0.59    9.2   0.3    2.7  3  RmuC             RmuC family
        0.1   12.1  10.7      0.084   12.4   4.9    2.0  2  Allexi_40kDa     Allexivirus 40kDa protein
        0.1   12.6  10.6       0.96    9.5   6.7    2.8  2  Laminin_II       Laminin Domain II
       0.11   10.3   6.3        1.1    6.9   0.6    2.0  2  Nup88            Nuclear pore component
       0.12   12.1  15.0          2    8.1   6.2    2.8  2  LXG              LXG domain of WXG superfamily
       0.12   13.0   0.3       0.21   12.2   0.3    1.4  1  Imm1             Immunity protein Imm1
       0.16   12.0   8.3       0.25   11.4   6.0    2.1  2  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
       0.18   12.0   4.8        7.7    6.8   0.5    3.6  2  WXG100           Proteins of 100 residues with WXG
        0.2   11.4   6.9      0.073   12.9   3.4    1.8  2  Baculo_p24       Baculovirus P24 capsid protein
       0.23   11.6   1.6       0.41   10.8   0.3    1.9  2  Cob_adeno_trans  Cobalamin adenosyltransferase
       0.29   11.0   1.7       0.46   10.4   0.5    1.8  2  DUF1054          Protein of unknown function (DUF1054)
       0.32   11.0  12.6       0.98    9.4   2.0    3.0  3  DUF1043          Protein of unknown function (DUF1043)
       0.34   11.6   9.6       0.25   12.0   1.0    3.0  3  FliD_N           Flagellar hook-associated protein 2 N-termin
       0.36   11.2   8.9        6.3    7.2   8.4    2.0  1  Fez1             Fez1
       0.38   11.2   7.6       0.87   10.0   3.2    2.3  2  DUF1690          Protein of Unknown function (DUF1690)
        0.4   10.5   7.8        1.4    8.7   2.1    2.2  2  PIN_8            PIN like domain
       0.46   10.7  11.8        4.7    7.5   5.1    3.2  2  TMF_TATA_bd      TATA element modulatory factor 1 TATA bindin
        0.5   10.2   6.1       0.16   11.8   0.7    2.2  2  USP8_interact    USP8 interacting
       0.53   10.3   6.1       0.48   10.4   0.6    2.4  2  EspB             Enterobacterial EspB protein
       0.63   10.1   7.8       0.97    9.5   2.4    2.7  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
       0.67   10.0   7.6          1    9.4   0.3    2.8  3  Noelin-1         Neurogenesis glycoprotein
        0.7    8.6   5.3       0.34    9.6   1.0    1.9  2  BshC             Bacillithiol biosynthesis BshC
       0.76    9.3   7.1        4.7    6.7   3.4    2.8  3  Fzo_mitofusin    fzo-like conserved region
       0.81    9.7   7.1       0.28   11.2   1.5    2.2  2  Serine_rich      Serine rich protein interaction domain
       0.98    9.6  13.7       0.79    9.9   7.1    2.9  3  Fib_alpha        Fibrinogen alpha/beta chain family
        1.3    9.4  12.3        2.2    8.7   1.5    3.0  3  YlqD             YlqD protein
        1.3    8.8   3.8        5.7    6.7   0.0    2.7  3  DUF4549          Domain of unknown function (DUF4549)
        2.2    8.6   7.4        2.6    8.3   0.3    3.1  2  Osmo_CC          Osmosensory transporter coiled coil
        2.4    8.9  10.5         11    6.8   3.2    3.1  2  Occludin_ELL     Occludin homology domain
        2.8    7.6  11.5        6.6    6.4   5.6    2.9  2  YkyA             Putative cell-wall binding lipoprotein
        3.7    7.5  10.2          1    9.3   1.0    3.2  3  Prefoldin        Prefoldin subunit
        4.6    7.8  17.2         11    6.6   2.9    2.9  2  DUF16            Protein of unknown function DUF16
        5.7    4.7   6.4        8.2    4.2   0.6    2.2  2  V_ATPase_I       V-type ATPase 116kDa subunit family
        6.1    6.8  12.6       0.45   10.4   0.5    3.0  3  PhaP_Bmeg        Polyhydroxyalkanoic acid inclusion protein (
        6.3    7.2   9.8       0.62   10.5   2.2    2.3  2  DUF4200          Domain of unknown function (DUF4200)
        6.5    6.9  13.6        4.9    7.3   0.7    3.9  3  Med9             RNA polymerase II transcription mediator com
          8    6.8   8.6         24    5.3   3.4    2.9  2  V-SNARE_C        Snare region anchored in the vesicle membran
        8.7    6.4  15.4       0.43   10.6   0.4    3.6  3  Sec2p            GDP/GTP exchange factor Sec2p


Domain annotation for each model (and alignments):
>> EzrA  Septation ring formation regulator, EzrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   2.0   2.7e-06    0.0007     132     216 ..      16     100 ..       2     110 .. 0.92
   2 ?    1.3   0.5      0.29        77     381     430 ..     152     201 ..     143     219 .. 0.61

  Alignments for each domain:
  == domain 1  score: 17.9 bits;  conditional E-value: 2.7e-06
                 TTTHHHHHHHHHHHHHHHHT--TTTTHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        EzrA 132 eknreeieklkekYrelrkkllanrfsygealeelekqleniekefsefeeltengdyveakeilkkleeeideleevieeiPel 216
                 ++ +e+i+ l++   + ++++++++++  e+++ +e+ l ++++ +  + ++ +++  ++ ++++k+le+++++l+++i+++ ++
  CCD26275.1  16 TDTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDASTLNKKQNLVKSLENDLNDLKSKIRDFNSY 100
                 56789**************************************************************************998766 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.29
                 THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS CS
        EzrA 381 leeleekleeieekqeeileslkslrkdEkrAreqldeikkelkeikrki 430
                 l+e +++l++i++  ++++ + +s+ ++ ++  + lde+++ ++ + +k+
  CCD26275.1 152 LREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKL 201
                 44555555555555555555555555555555555555555555554444 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.1     8e-06    0.0021     142     226 ..      13      98 ..       6     114 .. 0.88
   2 ?    4.9   0.8      0.04        10     156     208 ..     157     208 ..     143     222 .. 0.37

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 8e-06
        Spc7 142 egleenlegleedkelLekqeeeldellpeleeekaeleeeleklqeaaeeles.idkeeLeelreelaelkaeieekkkelaelq 226
                 ++++++ e++++ ++ ++++++ ++e ++e++e  +++ee+l +l++    + + +d   L++ ++ +++l+++++ +k ++ + +
  CCD26275.1  13 QVVTDTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDtVDASTLNKKQNLVKSLENDLNDLKSKIRDFN 98 
                 567788899999999********************************7777655499********************999998766 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.04
        Spc7 156 elLekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreel 208
                 ++L++  + +++l  + ++  +ele++ + l e+ e ++ +   +L   r++l
  CCD26275.1 157 DHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGV-MHKLSRGRRQL 208
                 33333333333333333333333333333333322222222.22233333333 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   5.3   0.00022     0.057      22      88 ..      23      98 ..       4      99 .. 0.79
   2 ?    1.3   0.2       1.6   4.2e+02      26      55 ..      71     100 ..      61     111 .. 0.69
   3 ?    4.8   0.1      0.13        34      21      67 ..     152     201 ..     147     211 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 0.00022
      DUF948 22 lklkktldeaaatieelekqvdpilkevedllakvne.........lledvneklekvdplteavadlgesvseln 88
                 +l++ +++ ++ti+e+++++d+i+++ve++l   n+          ++ +n+k + v++l + ++dl  +++++n
  CCD26275.1 23 TRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRslvimgdtvDASTLNKKQNLVKSLENDLNDLKSKIRDFN 98
                689999*******************************777555544344455566666666666666666666665 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 1.6
      DUF948  26 ktldeaaatieelekqvdpilkevedllak 55 
                 +tl++ ++ +++le++++ +  +++d  + 
  CCD26275.1  71 STLNKKQNLVKSLENDLNDLKSKIRDFNSY 100
                 466666666777777777766666665555 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.13
      DUF948  21 llklkktldeaaatieelekqvdpilkeve...dllakvnelledvnekl 67 
                 l++  + ld++ +t+++l  q++++ +e+e   +ll+++ e +++v +kl
  CCD26275.1 152 LREQDDHLDNIHDTMQNLHLQAQSMGQELEdqgQLLDEMDEGMSGVMHKL 201
                 45556677888888888887777777777622245666666666666665 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.5       2.6   6.8e+02       3      18 ..      43      58 ..      42      64 .. 0.89
   2 ?   -1.2   0.1       8.1   2.1e+03       7      18 ..     156     167 ..     150     177 .. 0.67
   3 !   18.6   0.1   5.2e-06    0.0014       2      53 .]     186     237 ..     185     237 .. 0.96

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 2.6
                HHHHHHHHHHHHHHHH CS
       SNARE  3 vDrIdtnVenaqsnve 18
                +D+I ++Ve++ ++++
  CCD26275.1 43 IDEIIQDVEETLVDLN 58
                899********99886 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 8.1
                 HHHHHHHHHHHH CS
       SNARE   7 dtnVenaqsnve 18 
                 d++ +n+++ ++
  CCD26275.1 156 DDHLDNIHDTMQ 167
                 666777766665 PP

  == domain 3  score: 18.6 bits;  conditional E-value: 5.2e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   2 mvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                 ++D++d  +  +  +++r++++L  + ++ k + + +ci lli+++i+l+vl
  CCD26275.1 186 LLDEMDEGMSGVMHKLSRGRRQLEWVYEKNKERYNDCCIGLLIIILIILLVL 237
                 79***********************************************996 PP

>> DUF892  Domain of unknown function (DUF892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   3.9e-05      0.01      38      84 ..       9      54 ..       3      91 .. 0.90
   2 ?    2.1   0.2      0.67   1.8e+02      56      96 ..     150     189 ..     145     203 .. 0.72

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 3.9e-05
                HHHHHHHHHHHHHHHHHHHHHHHTT-------.-HHHHTTT------ CS
      DUF892 38 aaleqHleeTegqierLeqvferlgesasekkcdamegliaegqeli 84
                + ++q ++ T++qi+rL+q +++   + +e+k d ++++i++++e++
  CCD26275.1  9 DPFDQVVTDTKEQITRLQQFISSSKNTINETK-DEIDEIIQDVEETL 54
                66889999**********************99.***********965 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.67
                 HHHHHTT-------.-HHHHTTT-----------THHHHHH CS
      DUF892  56 qvferlgesasekkcdamegliaegqelieeaaedeslkda 96 
                 q +++ + + ++++ d+m++l  ++q +++e  ++++l+d 
  CCD26275.1 150 QMLREQDDHLDNIH-DTMQNLHLQAQSMGQELEDQGQLLDE 189
                 55666666666666.88888888888888887777777664 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   4.1     5e-05     0.013       1      83 [.       9      89 ..       9      99 .. 0.66
   2 ?    4.6   0.1      0.18        48      47      66 ..      77      96 ..      70     121 .. 0.73
   3 ?    1.4   0.1       1.8   4.6e+02      36      59 ..     159     182 ..     125     220 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 5e-05
  Syntaxin-6_N  1 DPFfevkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvriveknpsk..fkidekelsr 83
                  DPF +v  + ++++ ++++ +++ +++    +++t++e+de  ++++++l +++  l  + +tv++   n+++  +k  e++l+ 
    CCD26275.1  9 DPFDQVVTDTKEQITRLQQFISSSKNT----INETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDASTLNKKQnlVKSLENDLND 89
                  999999999999999999999998762....223467777777777777777777777777777666555533234444444444 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.18
  Syntaxin-6_N 47 rkalrsiewdledLeetvri 66
                  ++ ++s+e+dl+dL+  +r 
    CCD26275.1 77 QNLVKSLENDLNDLKSKIRD 96
                  66788999999999988853 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 1.8
  Syntaxin-6_N  36 seeldetrteLrkalrsiewdled 59 
                    +++++t+++L+ + +s+ ++led
    CCD26275.1 159 LDNIHDTMQNLHLQAQSMGQELED 182
                   444444444444444444444444 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   1.0   0.00034     0.089      18      88 ..      15     100 ..       1     108 [. 0.67
   2 ?    4.1   0.0     0.087        23      59     130 ..     150     221 ..     129     240 .. 0.59

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00034
       TMPIT  18 akeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk...............eeeeeeveelkeelkerkkvlkevesl 88 
                  +  k+++ +l++++s+ +++i++ k ++ e+ ++++++  +++               +++++ v++l+++l++ k+ +++ +s+
  CCD26275.1  15 VTDTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNrslvimgdtvdastlNKKQNLVKSLENDLNDLKSKIRDFNSY 100
                 334455555555555555555555555555555555555554445566777777788889999*****************999887 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.087
       TMPIT  59 svkeeeeeeveelkeelkerkkvlkevesllpkknglylklvlGnvnvsllnkqdkfkyKdeYekFklkltv 130
                 ++ +e++++++++++++++ + + +++ + l  +  l  ++  G   v +  +  + ++   Yek k + + 
  CCD26275.1 150 QMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRGRRQLEWVYEKNKERYND 221
                 444666777777777777777777777777666666666666666666555444444444444444444433 PP

>> CEP63  Centrosomal protein of 63 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.2   0.00029     0.078      55     139 ..      19     103 ..      10     110 .. 0.87
   2 ?    7.2   1.9     0.016       4.3      33     102 ..     148     217 ..     143     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00029
       CEP63  55 hkEvgllrqqleelekekqelvakyeqqlqklreelsklkrsyekLqrkqlkearekeakskeedrvelsrlnskleefrqksle 139
                 ++ + +l+q + + +++ +e   + ++ +q ++e l+ l+rs  ++       + +k+++  +  + +l+ l+sk+ +f++ s +
  CCD26275.1  19 KEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDASTLNKKQNLVKSLENDLNDLKSKIRDFNSYSND 103
                 456899***************************************99887777776778888899999***********999876 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.016
       CEP63  33 letrlkireeeLasarnaldekhkEvgllrqqleelekekqelvakyeqqlqklreelsklkrsyekLqr 102
                  e +l+ +++ L ++++++++ h   + + q+le+  +   e+ +     ++kl +   +l+  yek + 
  CCD26275.1 148 QEQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRGRRQLEWVYEKNKE 217
                 68999***************************************************99999999999665 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.7      0.87   2.3e+02      37      62 ..      14      39 ..       2      53 .. 0.55
   2 ?    3.5   0.3      0.25        67      10      49 ..      57      98 ..      47     103 .. 0.60
   3 !   14.5   0.1   9.2e-05     0.024       9      88 ..     158     237 ..     154     238 .. 0.93

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.87
       Sec20 37 slekleeeykqvedvlsrskklvkkl 62
                ++++++e+ + +++ +s sk+ ++  
  CCD26275.1 14 VVTDTKEQITRLQQFISSSKNTINET 39
                44455555555555555555544432 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.25
       Sec20 10 lraisqllsqevqqSeenl.eeldas.tkslekleeeykqve 49
                l ++  ++ ++v+ S++n  ++l++s  ++l++l+++  +++
  CCD26275.1 57 LNRSLVIMGDTVDASTLNKkQNLVKSlENDLNDLKSKIRDFN 98
                444445666777777776424566662456777766666555 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 9.2e-05
       Sec20   9 slraisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglflacvvyvv 88 
                  l +i+  +++  +q +   +el+ + + l +++e+  +v   lsr+++ ++ + +++k  + +  ++l +++++++ v+
  CCD26275.1 158 HLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRGRRQLEWVYEKNKERYNDCCIGLLIIILIILLVL 237
                 5889999*********************************************9999999999999999999998888776 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.4     0.019       5.1      67     155 ..       4      94 ..       1      99 [. 0.55
   2 ?    3.3   0.0      0.23        60      56      81 ..      72      97 ..      64     119 .. 0.83
   3 !    8.8   0.2    0.0045       1.2     108     164 ..     154     210 ..     128     217 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.019
      DUF745  67 leqelreaeavvqeekkslqsseanakaaakaakqaqqqlealkallkaakenlenaeqva..agaqqelaektqlleaAkkRveeLkkql 155
                 +eq     ++vv + k+++++ ++ +++ +++ ++ + +++ + + ++++   l+++  +   +  ++ l++k++l+++ ++ ++ Lk+++
  CCD26275.1   4 IEQTTDPFDQVVTDTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMgdTVDASTLNKKQNLVKSLENDLNDLKSKI 94 
                 4555555566666666666666666666666666666665555555555444444433332113335567777777777777777777665 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.23
      DUF745 56 aLaGKqqlveqleqelreaeavvqee 81
                 L+ Kq lv++le++l++ ++ +++ 
  CCD26275.1 72 TLNKKQNLVKSLENDLNDLKSKIRDF 97
                58889999999999999998888765 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.0045
      DUF745 108 alkallkaakenlenaeqvaagaqqelaektqlleaAkkRveeLkkqlkearkdlek 164
                    + l++++++++n++  a+++ qel+++ qll++  + +  ++++l+  r+ le 
  CCD26275.1 154 EQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRGRRQLEW 210
                 4456789999999999999****************************9999998875 PP

>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1     0.023       6.1      26      65 ..      19      58 ..       2      62 .. 0.57
   2 !    9.6   0.2     0.004       1.1      50      84 ..      73     107 ..      69     108 .. 0.89
   3 ?    4.7   2.2      0.14        38      12      67 ..     149     211 ..     144     219 .. 0.62

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.023
        KxDL 26 nkknreLlelnalsqerlaklrarfkqgtkllkevkkdLe 65
                +++  +L++++  s++  +++++++ + ++++ e+  dL+
  CCD26275.1 19 KEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLN 58
                3334456666666666666666666666666666666665 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.004
        KxDL  50 fkqgtkllkevkkdLesifkkirslkaklakkyPe 84 
                 ++++++l+k++ +dL+ +++kir +++  +++ P+
  CCD26275.1  73 LNKKQNLVKSLENDLNDLKSKIRDFNSYSNDDTPK 107
                 678899********************998888876 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.14
        KxDL  12 deilalQaqtsgrlnkknreLlelnalsqerla.......klrarfkqgtkllkevkkdLesi 67 
                 +++l+ Q + ++ + ++ + L+ + + + ++l+       ++ + +   ++ l++ +++Le++
  CCD26275.1 149 EQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEdqgqlldEMDEGMSGVMHKLSRGRRQLEWV 211
                 468999999999999999999988888888876111111133333333344455555555555 PP

>> Perilipin  Perilipin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1    0.0013      0.35      94     145 ..       9      63 ..       6      97 .. 0.80
   2 ?    6.2   0.3     0.017       4.6     232     287 ..     165     218 ..     155     222 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0013
                 XXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
   Perilipin  94 qpaekvvsetke...lvtqtvsgAkdavsstvtevvdktkgAvqssveltksvvs 145
                  p ++vv++tke    + q +s+ k+++++t  e+ + +++  ++ v+l +s v 
  CCD26275.1   9 DPFDQVVTDTKEqitRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVI 63 
                 589*********6665668899999999988777777777777778888888775 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.017
                 HHHHHHHHHHHHHHHHHHHHHHHHHHH--...------------------------ CS
   Perilipin 232 klrqakqraqealaqlsstldLielakkglsaanqklseaqekllqswlewkkkqq 287
                  +++ + +aq++ ++l+   +L++ + +g+s +++kls+++ +l   w+  k+k++
  CCD26275.1 165 TMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRGRRQL--EWVYEKNKER 218
                 6788899999999******************************9..6666666654 PP

>> THOC7  Tho complex subunit 7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2    0.0032      0.85      43      98 ..       9      61 ..       2      63 .. 0.82
   2 ?    7.7   1.0     0.015       4.1       6     105 ..      77     187 ..      71     221 .. 0.60

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0032
       THOC7 43 edllldfaafelsierlqllakanerereryeaekeeieseieavreeieelkaqL 98
                + + + ++  + +i+rlq   ++ + ++++ +   +ei++ i++v+e  ++l+ +L
  CCD26275.1  9 DPFDQVVTDTKEQITRLQQFISSSKNTINETK---DEIDEIIQDVEETLVDLNRSL 61
                55666677778899999999999999999988...99*************999887 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.015
       THOC7   6 sRLlnv...eerplkrltkrllklltsla.......esteeeleqlkedllldfaafelsierlqllakanerer.eryeaekeeieseieavreeiee 93 
                 + L+ +   +   lk  ++ +++++++ +        s+ ++++ +++d l df + +   e +  la+  ++++ ++ +++ ++i++++++++ + ++
  CCD26275.1  77 QNLVKSlenDLNDLKSKIRDFNSYSNDDTpknidnpFSSTAANDDDEDDDLDDFKTVDVNHEASGGLANPFQEQMlREQDDHLDNIHDTMQNLHLQAQS 175
                 556666443333355555566665555558888888444566666666666677777777776665555554443133444556777777777777777 PP

       THOC7  94 lkaqLeearatr 105
                 + ++Le+  +++
  CCD26275.1 176 MGQELEDQGQLL 187
                 777776655544 PP

>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       7.1   1.9e+03      63      65 ..      38      40 ..      10      68 .. 0.52
   2 ?   13.9   0.0   0.00015     0.039       2      43 ..      74     115 ..      73     176 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 7.1
                 HCC CS
  Microtub_bd 63 eqe 65
                 e++
   CCD26275.1 38 ETK 40
                 222 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 0.00015
                  HHHHHHHHHCHHHHHHHCTB-EEEEEEECCCS-T.EEEETTT CS
  Microtub_bd   2 ekeetlRrkleNtiqelkGniRvfarvrpelesekakikfpe 43 
                  +k++ l + leN++++lk +iR f  ++++ + ++++  f++
   CCD26275.1  74 NKKQNLVKSLENDLNDLKSKIRDFNSYSNDDTPKNIDNPFSS 115
                  6788899******************99999888754444443 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.9      0.01       2.7      41     123 ..      13      93 ..       2      99 .. 0.62
   2 ?    9.1   0.2    0.0048       1.3      49     106 ..     154     211 ..     142     216 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.01
     DUF1664  41 davesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeaveglesklerieek 123
                 ++v++  +q++++++ +++ k+ +++  d++d+ +++++e+  ++++ +  + + +++  + +++ +++v++le+ l+++++k
  CCD26275.1  13 QVVTDTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDA--STLNKKQNLVKSLENDLNDLKSK 93 
                 5566666666666666666666666666666666666666666666666666665554..34455566777777777666554 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0048
     DUF1664  49 qleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesv 106
                 + ++  +++++t ++L  + ++++++l++q ++  e++e ++ v ++ls+ ++++e v
  CCD26275.1 154 EQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRGRRQLEWV 211
                 4566678999999999999**********************99999999988887766 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.2    0.0022      0.58      24     109 ..       7      92 ..       2     119 .. 0.73
   2 ?    7.7   0.3      0.01       2.8      22      64 ..     156     198 ..     147     220 .. 0.82

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0022
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  24 dlskieaevsaleellnklkkelqeeeeaikklkkeieaslkqqek.lqhlkenlpshlpkktaassaeeskssspeeeeeteskke 109
                 +   +++ v+  +e++ +l++++ + +++i+++k+ei++ ++  e+ l  l+  l   + + ++as+ +++++  ++ e++ ++ k+
  CCD26275.1   7 TTDPFDQVVTDTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEEtLVDLNRSL-VIMGDTVDASTLNKKQNLVKSLENDLNDLKS 92 
                 5667889999999999999999*99999999999999999977777666666655.5567777777777777777766665555554 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.01
                 ..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        SKA1  22 kedlskieaevsaleellnklkkelqeeeeaikklkkeieasl 64 
                    l +i ++++ l+ + +++ +el+++ ++++++ + +   +
  CCD26275.1 156 DDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVM 198
                 45699*************************9999887666555 PP

>> DUF2408  Protein of unknown function (DUF2408)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   2.6   0.00094      0.25       3      73 ..      42     109 ..      40     212 .. 0.56
   2 ?    2.5   0.0      0.75     2e+02       1      32 [.     187     218 ..     187     222 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00094
     DUF2408   3 elspelepiyekLvsirrsLlslaakskaeeakeseevkeelkelkeeLkkieskrdeegkFkseegkevv 73 
                 e+++ ++ + e Lv++ rsL+ +  + +a++ +++   ++ +k+l+++L++++sk  + + + ++++ +  
  CCD26275.1  42 EIDEIIQDVEETLVDLNRSLVIMGDTVDASTLNKK---QNLVKSLENDLNDLKSKIRDFNSYSNDDTPKNI 109
                 688889999************98888777755444...455566666666666655554444333332222 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.75
     DUF2408   1 leelspelepiyekLvsirrsLlslaakskae 32 
                 l+e+++ ++ +++kL + rr+L  +  k+k++
  CCD26275.1 187 LDEMDEGMSGVMHKLSRGRRQLEWVYEKNKER 218
                 67899999**************9988888876 PP

>> Prominin  Prominin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.5     0.033       8.7     352     400 ..      13      60 ..       2      75 .. 0.56
   2 ?   11.1   0.7   0.00026     0.069     271     433 ..      82     237 ..      69     241 .] 0.53

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.033
    Prominin 352 kvknqtaevvpdlkkalakgreqikklakkiprealdavisdlenters 400
                 +v ++t+e ++ l++ +++ +++i++++ +i +e++++v ++l +++rs
  CCD26275.1  13 QVVTDTKEQITRLQQFISSSKNTINETKDEI-DEIIQDVEETLVDLNRS 60 
                 3444555555555555555555555555555.55555555555544444 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00026
    Prominin 271 qLrdglrgvkrdlnqalsn.lCqs.eeC.skilssleiekldtskcldqlpnvdevlealeevletnlssivkeglarlneipekvknqtaevvpdlkk 366
                  L++ l++ k ++++  s  +  + ++  + ++s++ ++  d + +ld  + vd   ea  ++ +   +++ +e+ + l++i ++++n ++   +++ +
  CCD26275.1  82 SLENDLNDLKSKIRDFNSYsNDDTpKNIdNPFSSTA-ANDDDEDDDLDDFKTVDVNHEASGGLANPFQEQMLREQDDHLDNIHDTMQN-LHLQAQSMGQ 178
                 344444444444443333211111123303333333.335566666677777777777777777777777778888888888887765.3333445555 PP

    Prominin 367 alakgreqikklakkiprealdavisdlenterssktfddvvekyekyrwliglivcsllllivvil 433
                        +++++ + + +e+ + ++  ++++ r  ++ + v+ek  +  +  ++ + +++l+i+++l
  CCD26275.1 179 -------ELEDQGQLL-DEMDEGMSGVMHKLSRGRRQLEWVYEKNKERYNDCCIGLLIIILIILLVL 237
                 .......555555555.55555556666666666777777777766666666666666665555544 PP

>> Tweety  Tweety
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.4    0.0066       1.7     279     345 ..       9      75 ..       4      98 .. 0.59
   2 ?    9.1   1.1    0.0017      0.45     276     335 ..     142     202 ..     132     241 .] 0.72

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0066
      Tweety 279 npFqqrLtesqkaltemqeqveellriavelfptaekkLlaiqellnsternlhqLtAlldcrslhk 345
                 +pF q +t +++ +t++q+ ++  + +  e+ +++++ ++ ++e+l   +r+l  +  ++d  +l+k
  CCD26275.1   9 DPFDQVVTDTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDASTLNK 75 
                 5555555555555555555555555555555555555555555555555555555555555555544 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0017
      Tweety 276 sltnpFq.qrLtesqkaltemqeqveellriavelfptaekkLlaiqellnsternlhqLt 335
                 +l npFq q L+e  + l+++++++++l+ +a+   ++ e++ + ++e+ +     +h+L+
  CCD26275.1 142 GLANPFQeQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLS 202
                 678***857899999*************999999888888766666666666666666665 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1      0.03         8      45      77 ..      20      52 ..       3      58 .. 0.82
   2 ?    3.3   0.0      0.35        92       5      37 ..      71     103 ..      68     111 .. 0.83
   3 ?    4.4   2.2      0.16        43      11      76 ..     149     209 ..     137     221 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.03
        FliJ 45 aelrnyqafisaldeaiaqqkqelaqaekqvek 77
                +++  +q+fis+ +++i+++k e++   ++ve+
  CCD26275.1 20 EQITRLQQFISSSKNTINETKDEIDEIIQDVEE 52
                678889999999999999999999988888876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.35
        FliJ   5 reLaeaqrelqqaeekleeleqyrqeyqkqlsg 37 
                  +L++ q+ +++ e+ l+ l++ ++++ +  ++
  CCD26275.1  71 STLNKKQNLVKSLENDLNDLKSKIRDFNSYSND 103
                 68999*****************99998766665 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.16
        FliJ  11 qrelqqaeekleeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqqkqelaqaekqve 76 
                 ++ l+++  +l+++ +++q+++ q+++ +     +el    + ++ +de ++  +++l++ ++q+e
  CCD26275.1 149 EQMLREQDDHLDNIHDTMQNLHLQAQSMG-----QELEDQGQLLDEMDEGMSGVMHKLSRGRRQLE 209
                 55667777888888888888888888888.....99999999999999999999999998888887 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.1    0.0098       2.6     127     168 ..       5      46 ..       3      61 .. 0.80
   2 ?    5.7   7.1     0.052        14     110     187 ..      20      95 ..      18      99 .. 0.75
   3 ?    8.9   1.1    0.0058       1.5      71     134 ..     146     209 ..     132     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0098
     UPF0242 127 eaiaedfeelkleleeqLaekqellqeyqetieeqrsvlekr 168
                 e++   f+++  + +eq+ + q+ ++ +++ti+e + ++++ 
  CCD26275.1   5 EQTTDPFDQVVTDTKEQITRLQQFISSSKNTINETKDEIDEI 46 
                 677778899999999999999999999999999999999864 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.052
     UPF0242 110 eelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeqrsvlekrqdqieqLeskVrDlnyEik 187
                 e++ rl++   + +   ++++ +++e  +++ee+L   +  l  +  t+    s+l+k+q+ ++ Le   +Dl+  i+
  CCD26275.1  20 EQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVD--ASTLNKKQNLVKSLENDLNDLKSKIR 95 
                 45555555555556666667778888888888888888888888887776..58999999999999999999998877 PP

  == domain 3  score: 8.9 bits;  conditional E-value: 0.0058
     UPF0242  71 eekeaklteldeglktkeealeelqeeeeeLkeeldakeeelerlkeenqqLqekleaiaedfe 134
                 + +e++l e+d++l+++++++++l  + + + +el+ + ++l ++ e    +  kl+   ++ e
  CCD26275.1 146 PFQEQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRGRRQLE 209
                 55889999***99***********9999999999999999999998888877777777666554 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   2.0       1.9     5e+02     316     367 ..      48      99 ..      13     121 .. 0.46
   2 ?   11.7   0.0   0.00031     0.081     323     401 ..     159     239 ..     116     241 .] 0.64

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 1.9
     DUF2207 316 dpyEkalldlLfdkseegks.....lkeikkyakkskkkakkfkkalkkwksavkk..k 367
                  + E++l+dl         s          ++++k++ + k++ + l+++ks++++  +
  CCD26275.1  48 QDVEETLVDLNR-------SlvimgDTVDASTLNKKQNLVKSLENDLNDLKSKIRDfnS 99 
                 334444433222.......1222342223344444444555555555555555555321 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 0.00031
     DUF2207 323 ldlLfdkseegks.......lkeikkyakkskkkakkfkkalkkwksavkk..kergyfdkkgkkklkklsalglgliilglililla 401
                 ld + d      +        ++++++++++ ++ +++ + ++ ++ ++ +  ++ ++  +k+k++++  ++ +l++i+++l+++ ++
  CCD26275.1 159 LDNIHD------TmqnlhlqAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRgrRQLEWVYEKNKERYNDCCIGLLIIILIILLVL-AF 239
                 333333......233344558899999999999999999999999999999*988888888866655555555555555555544.44 PP

>> MHC2-interact  CLIP, MHC2 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.029       7.7      11      99 ..      30     119 ..      18     128 .. 0.79
   2 ?    4.6   0.4      0.12        31      53      78 ..     151     176 ..     149     204 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.029
  MHC2-interact  11 pssegvlgvrneersslkralkvaglsiLvalLiAGQavTaYfvyqQkgqitkLektsenLklellrrkl.pkaskPkkmalPllslpll 99 
                    +ss+  ++ +++e +   + +  + + +  +l i G  v a  + + ++ +++Le+  + Lk++ +  ++ ++  +Pk++  P+ s++  
     CCD26275.1  30 SSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDASTLNKKQNLVKSLENDLNDLKSKIRDFNSySNDDTPKNIDNPFSSTAAN 119
                    466667777777777788888888888888999******************************998765515667899999999887765 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.12
  MHC2-interact  53 fvyqQkgqitkLektsenLklellrr 78 
                    ++ +Q ++++++ +t +nL+l+++ +
     CCD26275.1 151 MLREQDDHLDNIHDTMQNLHLQAQSM 176
                    6778***************9998776 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.9     0.034         9      16      53 ..       5      42 ..       4      53 .. 0.78
   2 ?    5.6   0.1     0.094        25       3      57 ..      52     104 ..      41     112 .. 0.75
   3 ?    1.8   6.4       1.4   3.7e+02      14      50 ..     147     183 ..     146     192 .. 0.61
   4 ?    3.8   0.1      0.34        89      15      49 ..     183     217 ..     179     221 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.034
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX 16 edtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53
                e+t +  ++vv++  +qi+rlq+ +   ++ ++e +++
  CCD26275.1  5 EQTTDPFDQVVTDTKEQITRLQQFISSSKNTINETKDE 42
                77888889999999999999999888877777666554 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.094
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX   3 erleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkeleessgas 57 
                 e l++L   l  + dt+++   ++ + q  ++ l+  l+ l+ ++++ ++ s+++
  CCD26275.1  52 ETLVDLNRSLVIMGDTVDA--STLNKKQNLVKSLENDLNDLKSKIRDFNSYSNDD 104
                 5556666666666666664..6788899999999999999999999988877654 PP

  == domain 3  score: 1.8 bits;  conditional E-value: 1.4
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
        SlyX  14 fqedtieeLndvvaeqqqqidrlqrqlrllaerlkel 50 
                 fqe+++ e +d + + +++++ l+ q + + ++l++ 
  CCD26275.1 147 FQEQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQ 183
                 5666666666666666666666666666666666554 PP

  == domain 4  score: 3.8 bits;  conditional E-value: 0.34
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XX CS
        SlyX  15 qedtieeLndvvaeqqqqidrlqrqlrllaerlke 49 
                 q ++++e+++ +    ++++r +rql++++e+ ke
  CCD26275.1 183 QGQLLDEMDEGMSGVMHKLSRGRRQLEWVYEKNKE 217
                 7789999999999999**************99876 PP

>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   3.0      0.97   2.5e+02     150     197 ..      71      97 ..       4     114 .. 0.59
   2 ?   12.3   0.2   0.00029     0.075     143     202 ..     150     209 ..     122     221 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.97
        MPS2 150 eklrrsnrklkaLevrveslkdELeakdevlrekeRelleLkkrlsey 197
                  +                     L++k+++++  e +l +Lk+++ ++
  CCD26275.1  71 ST---------------------LNKKQNLVKSLENDLNDLKSKIRDF 97 
                 33.....................4555555555555555555555554 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 0.00029
        MPS2 143 lkkqesPeklrrsnrklkaLevrveslkdELeakdevlrekeRelleLkkrlseykekYe 202
                 +  +e+  +l ++   +++L+++ +s+ +ELe++ ++l e +  ++ + ++ls  + + e
  CCD26275.1 150 QMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRGRRQLE 209
                 555666677788999****************************99999999987665555 PP

>> YtxH  YtxH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.2    0.0098       2.6      53      73 ..      33      53 ..       2     220 .. 0.80

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0098
        YtxH 53 kekaedlkekvkekadelkek 73
                k+++++ k++++e ++++ e+
  CCD26275.1 33 KNTINETKDEIDEIIQDVEET 53
                444444444444444444332 PP

>> RIG-I_C  RIG-I receptor C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.9     0.053        14       4      65 ..      28      95 ..      25     103 .. 0.72
   2 ?    9.0   0.2    0.0049       1.3      10      65 ..     153     209 ..     146     229 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.053
     RIG-I_C  4 idkvkerkkdpfgeaikeimskiedklkk......lltrieelsklkksdfgtqkYeqwvvklekkaa 65
                + + ++ + ++ +++i+ei++ +e+ l++      ++ +  + s+l+k++   ++ e+ + +l+ k++
  CCD26275.1 28 FISSSKNTINETKDEIDEIIQDVEETLVDlnrslvIMGDTVDASTLNKKQNLVKSLENDLNDLKSKIR 95
                556677899999************99998555555555566667777666666777777777766665 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0049
     RIG-I_C  10 rkkdpfgeaikeimskiedklkklltrieelsklk.ksdfgtqkYeqwvvklekkaa 65 
                 r++d+  + i+++m++ + +++++ +++e++ +l  + d g     +++++ ++++ 
  CCD26275.1 153 REQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLdEMDEGMSGVMHKLSRGRRQLE 209
                 89****************************999987777776666666666555555 PP

>> ApoLp-III  Apolipophorin-III precursor (apoLp-III)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.8    0.0024      0.63      23     104 ..      14      77 ..       2     112 .. 0.45
   2 ?    0.9   0.0       1.7   4.5e+02      92     115 ..     162     185 ..     140     209 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.0024
   ApoLp-III  23 vvetiKens...enlvdqlkqvikslqeelkkksdeleealkevkkkieetadklseenPevkkkaqelqekvQsgvqslvkesq 104
                 vv+  Ke+    ++++++ k++i+++++e+ + ++ +ee+l +++  ++ + d++ +                     s+++  q
  CCD26275.1  14 VVTDTKEQItrlQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDA---------------------STLNKKQ 77 
                 333333332111233333344444444444444444444444444444444444333.....................2233333 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 1.7
   ApoLp-III  92 vQsgvqslvkesqklaeslkensq 115
                 + +  q+l  ++q ++++l+++ q
  CCD26275.1 162 IHDTMQNLHLQAQSMGQELEDQGQ 185
                 333444444444444444444443 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.6    0.0012      0.32      86     120 ..      11      45 ..       2      65 .. 0.62
   2 ?    3.2   0.1      0.39     1e+02     106     122 ..      75      91 ..      66     111 .. 0.64
   3 ?    3.3   0.4      0.36        96      84     122 ..     153     191 ..     116     192 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.0012
     DUF5082  86 ldelidaieeEIerLenqiseaqgvldtlqsqlns 120
                  d+++   +e I+rL++ is++++ ++ ++ ++++
  CCD26275.1  11 FDQVVTDTKEQITRLQQFISSSKNTINETKDEIDE 45 
                 45555555555555555555555555555555554 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.39
     DUF5082 106 eaqgvldtlqsqlnslk 122
                 ++q+ +++l++ ln+lk
  CCD26275.1  75 KKQNLVKSLENDLNDLK 91 
                 44444444444444443 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.36
     DUF5082  84 dkldelidaieeEIerLenqiseaqgvldtlqsqlnslk 122
                 ++ d+  d+i +  ++L  q +++ + l+ + + l++++
  CCD26275.1 153 REQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMD 191
                 566788899999999***********9999999999986 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.9     0.015       3.9       8      40 ..      21      54 ..      15      61 .. 0.74
   2 ?    4.4   0.1      0.18        48       2      17 ..      80      95 ..      71     110 .. 0.82
   3 ?    3.8   0.1      0.28        74       2      41 ..     159     198 ..     156     214 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.015
   FlaC_arch  8 klsklsteletvkkeneelsksveelkenV.kdl 40
                ++ +l+  +++ k++++e +++++e+ ++V + l
  CCD26275.1 21 QITRLQQFISSSKNTINETKDEIDEIIQDVeETL 54
                5667777788888888888888888888884444 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.18
   FlaC_arch  2 idelEnklsklstele 17
                +++lEn+l++l++++ 
  CCD26275.1 80 VKSLENDLNDLKSKIR 95
                6788899988888875 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.28
   FlaC_arch   2 idelEnklsklsteletvkkeneelsksveelkenVkdll 41 
                 +d++   +++l  + +++ +e+e+  + ++e++e    ++
  CCD26275.1 159 LDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVM 198
                 5888899999999999999999999999999998766555 PP

>> RmuC  RmuC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.7     0.022       5.7       3      60 ..       4      61 ..       2      64 .. 0.84
   2 ?   -0.5   0.0       2.1   5.4e+02     141     160 ..      74      93 ..      63     106 .. 0.68
   3 ?    9.2   0.3    0.0022      0.59     223     272 ..     154     206 ..     147     218 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.022
        RmuC  3 leellkplkeklekfeekveeeskeeaeeleslkeqlkelqelneqlgdeaenLtkaL 60
                +e++++p+++ +++++e+++  ++  +++ ++++e   e+ e  ++++++  +L++ L
  CCD26275.1  4 IEQTTDPFDQVVTDTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSL 61
                7889999999999999999999999999999999999999999888888888887766 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 2.1
        RmuC 141 ealkahaksvkkhikeLseK 160
                 +++++++ks+++  ++L++K
  CCD26275.1  74 NKKQNLVKSLENDLNDLKSK 93 
                 45566777777777777776 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0022
        RmuC 223 aqeknaeeiaellgelydkfekfgedleklgkklekaqksydkavkkle...g 272
                 +q ++ ++i +++++l+ + +++g++le+ g+ l+++ + +  +++kl+   +
  CCD26275.1 154 EQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSrgrR 206
                 5788999***************************************9996543 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   4.9   0.00032     0.084      59     171 ..      16     132 ..       9     141 .. 0.62
   2 ?    3.5   0.4      0.16        43      67     109 ..     146     188 ..     132     219 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00032
  Allexi_40kDa  59 hdvdsiinklnpvsllsqttlLselrdalrtltklldk.lksvekk...lelsaetasdskllkklesietsleelhakldelsssetseseg.Pss 150
                    d+ + i++l+++ + s +++++e +d++ ++ +++++ l +++++   + +  +  + +k ++ ++s+e++l++l+ k++++ s +++ + +  ++
    CCD26275.1  16 TDTKEQITRLQQF-ISSSKNTINETKDEIDEIIQDVEEtLVDLNRSlviMGDTVDASTLNKKQNLVKSLENDLNDLKSKIRDFNSYSNDDTPKnIDN 111
                   6777888999999.44555667888888877666555314444444000444455555556667799*************99988766554441333 PP

  Allexi_40kDa 151 sptkassaeaaasedLpiyqa 171
                     +++++++ + ++dL  +++
    CCD26275.1 112 PFSSTAANDDDEDDDLDDFKT 132
                   333334444445555776664 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.16
  Allexi_40kDa  67 klnpvsllsqttlLselrdalrtltklldklksvekklelsae 109
                    +++  l  q  +L +++d++++l+ + +++ +  + + +  +
    CCD26275.1 146 PFQEQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLD 188
                   4555555566777777777777777777776655544433333 PP

>> Laminin_II  Laminin Domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.7    0.0036      0.96      10      92 ..      13      94 ..       2     111 .. 0.57
   2 ?    3.6   0.1      0.24        64      27      76 ..     153     202 ..     142     218 .. 0.57

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0036
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTT..TTGGGHHHHHHHHHH...HHHHH CS
  Laminin_II 10 etakevleqlaplsqnlentkeklseinrsveetnekvkdankairdArrsvkkLeklap..qLldklkelkqleeassslsdni 92
                + ++ ++eq++ l+q ++  k+ ++e +++   ++e ++d  ++++d +rs + +  +++   L +k + +k le+  + l+ +i
  CCD26275.1 13 QVVTDTKEQITRLQQFISSSKNTINETKDE---IDEIIQDVEETLVDLNRSLVIMGDTVDasTLNKKQNLVKSLENDLNDLKSKI 94
                444555555555555555544444444444...5555666666777777777666555442145555555555555555555555 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.24
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TTTTTGGGHH CS
  Laminin_II  27 entkeklseinrsveetnekvkdankairdArrsvkkLeklapqLldklk 76 
                  +  + l +i++++++ + +++++ + ++d ++   ++++ +  ++ kl+
  CCD26275.1 153 REQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLS 202
                 33334455555555555555555555555555555555555555555544 PP

>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.6    0.0043       1.1     582     660 ..      23      99 ..       6     120 .. 0.75
   2 ?    6.4   0.6    0.0061       1.6     602     670 ..     148     216 ..     143     222 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0043
       Nup88 582 kslseraeklAekyeeikdkQeklvrrvkkvlkrlnsklpvlseaeremkkelekikeklkslknalkqvkkkldkqrk 660
                   l++   +  +  +e kd+ +++++ v++ l +ln +l  + ++ ++ ++ l+k ++ +ksl+n l+++k k+   ++
  CCD26275.1  23 TRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDT-VD-ASTLNKKQNLVKSLENDLNDLKSKIRDFNS 99 
                 455555566667778999999999999999999999998888776.44.688999999999999999999988765544 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0061
       Nup88 602 Qeklvrrvkkvlkrlnsklpvlseaeremkkelekikeklkslknalkqvkkkldkqrkqiakskeeek 670
                 Qe+++r  ++ l ++++ + +l  + ++m +ele   + l+++++ ++ v +kl+  r+q++   e++k
  CCD26275.1 148 QEQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRGRRQLEWVYEKNK 216
                 999********************************************************9997766633 PP

>> LXG  LXG domain of WXG superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.2    0.0076         2     103     184 ..      17      99 ..      10     104 .. 0.80
   2 ?    4.7   5.8     0.084        22     138     196 ..     146     204 ..      66     219 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0076
         LXG 103 elenglkkakevteelkdeinkilasvsdivslpelddsevkdslqkakkkvq.etiekledfdqeqksalanlesdlkalkt 184
                 + + +++++++ ++++k+ in++++++++i++ +e ++ +++ sl  + ++v+  t++k +++  ++ ++l++l+s+++  ++
  CCD26275.1  17 DTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDaSTLNKKQNLVKSLENDLNDLKSKIRDFNS 99 
                 6788999************************9999999999999999988887347777777777777777777777665555 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.084
         LXG 138 lddsevkdslqkakkkvqetiekledfdqeqksalanlesdlkalktyvseLeemtskg 196
                 +  +++  + ++  +++ +t+++l+   q++ ++l+++ + l+++  ++s +++  s g
  CCD26275.1 146 PFQEQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRG 204
                 44455555555556666667777777777777777777777777777777776666655 PP

>> Imm1  Immunity protein Imm1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   0.00081      0.21       7      83 ..      37     126 ..      31     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00081
        Imm1   7 vstpeEvdalidrlaadgagqave.svveladagdewgpp......Levgvgg.daglgglvylsge.....ddgpvsssngdppdseev 83 
                  +t++E+d+ i+++ +  +    +  ++  +++++   ++      Le+++++  ++   ++++s++      d+p+ss++++++d+++ 
  CCD26275.1  37 NETKDEIDEIIQDVEETLVDLNRSlVIMGDTVDASTLNKKqnlvksLENDLNDlKSKIRDFNSYSNDdtpknIDNPFSSTAANDDDEDDD 126
                 589*************999988778555555554555444699999999987724578899**********9899999999999998875 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   6.0   0.00096      0.25      30     105 ..      20      98 ..       5     102 .. 0.75
   2 ?    0.3   0.0       2.4   6.3e+02     103     111 ..     161     169 ..     147     208 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00096
  Baculo_PEP_C  30 vqilaqlatlldaietqLnalsedlksllaeldtrldtlltnLtdalnalq....dtlrneLtnlnsiltnLlssvtNin 105
                    qi + l++ + + ++++n+ ++++ + ++++++ l +l   L     ++     ++ +n  ++l+++l++L s++   n
    CCD26275.1  20 EQI-TRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDastlNKKQNLVKSLENDLNDLKSKIRDFN 98 
                   456.7888888888999999999999999999997777777776666666554455667778899999999999987655 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 2.4
  Baculo_PEP_C 103 NinstLnnl 111
                   Ni  t++nl
    CCD26275.1 161 NIHDTMQNL 169
                   222222222 PP

>> WXG100  Proteins of 100 residues with WXG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       1.4   3.8e+02      17      37 ..      77      97 ..      70     100 .. 0.76
   2 ?    6.8   0.5     0.029       7.7      51      85 ..     157     191 ..     143     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 1.4
                HHHHHHHHHHHHHHHHHHHHC CS
      WXG100 17 qkqaeeledelqrlkaevdal 37
                q+  ++le+ l++lk+++ + 
  CCD26275.1 77 QNLVKSLENDLNDLKSKIRDF 97
                566788999999999988765 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.029
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      WXG100  51 aefeewkqaaqklvdaLeeisealkqaanafedaD 85 
                 + +++++ ++q+l+ + ++++++l+  ++ + + D
  CCD26275.1 157 DHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMD 191
                 44566666667777777777777666666665555 PP

>> Baculo_p24  Baculovirus P24 capsid protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   3.4   0.00028     0.073     109     177 ..      13      89 ..       3      95 .. 0.81
   2 ?   -0.4   0.1       3.2   8.5e+02     117     152 ..     159     171 ..     118     217 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00028
  Baculo_p24 109 p.lkdiktqlctlqecleesnvlvnsttesssn.......enieslreilrseeasllsnlnsllesikslqadltn 177
                 + ++d k+q+ +lq+ +++s++++n+t+++ ++       + ++  r ++    ++ +s ln+  + +ksl +dl++
  CCD26275.1  13 QvVTDTKEQITRLQQFISSSKNTINETKDEIDEiiqdveeTLVDLNRSLVIMGDTVDASTLNKKQNLVKSLENDLND 89 
                 247899******************988777774455666677788888888999999***************99975 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 3.2
  Baculo_p24 117 lctlqecleesnvlvnsttesssnenieslreilrs 152
                 l +++++++                        l+ 
  CCD26275.1 159 LDNIHDTMQ-----------------------NLHL 171
                 222222222.......................1111 PP

>> Cob_adeno_trans  Cobalamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3    0.0016      0.41      35     105 ..      25      97 ..       7     109 .. 0.74
   2 ?   -0.5   0.1       4.4   1.2e+03      65     101 ..     160     193 ..     132     213 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0016
                      HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHT.-BTCCG-S--..HHHHHHHHHHHHHHHHHS--E CS
  Cob_adeno_trans  35 lnsaiglarallaeeeeelkeaLeeiqneLfdlgaelatpekkkekkkit..eeeveelekeideleaelppl 105
                      l+ +i   +++++e+++e++e ++++++ L+dl  +l +  +++++++++  ++ v+ le+ +++l++++  +
       CCD26275.1  25 LQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDASTLNkkQNLVKSLENDLNDLKSKIRDF 97 
                      556666677777777999******************9988444555555532334777888888887776654 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 4.4
                      HHHHHHHHT.-BTCCG-S--HHHHHHHHHHHHHHHHH CS
  Cob_adeno_trans  65 fdlgaelatpekkkekkkiteeeveelekeideleae 101
                       ++  ++   + + +++++ +e +e+  + +de+++ 
       CCD26275.1 160 DNIHDTMQ--NLHLQAQSMGQE-LEDQGQLLDEMDEG 193
                      22222221..222333333333.44444445555544 PP

>> DUF1054  Protein of unknown function (DUF1054)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       6.5   1.7e+03     174     190 ..      37      53 ..       5      62 .. 0.50
   2 ?   10.4   0.5    0.0017      0.46     102     194 ..      73     169 ..      60     172 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 6.5
                 HHHHS-HHHHHHHHHHH CS
     DUF1054 174 dkllkseeellklieet 190
                 ++++++ +e+++++eet
  CCD26275.1  37 NETKDEIDEIIQDVEET 53 
                 22222233333333333 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0017
                 -TTHHHHHHHHHHTHHHHHHHS-TT-EEES-TTS---E...EGGG--HHHHHHHHHHHHH-T.T--EEEEEEEEHHHHHHS-HHHHHHHHHHHHHHH CS
     DUF1054 102 aknkeeiakkllkelkellkelpkdfvvskdhtkkeak...slseldeeeleellerlkkvk.kaellvGreikkedkllkseeellklieetfkeL 194
                  ++k++++k+l+++l++l +++ +  + s+d+t k+     s + +++++ ++ l+ +k+v  ++e   G + + ++++l+++++ l++i++t+++L
  CCD26275.1  73 LNKKQNLVKSLENDLNDLKSKIRDFNSYSNDDTPKNIDnpfSSTAANDDDEDDDLDDFKTVDvNHEASGGLANPFQEQMLREQDDHLDNIHDTMQNL 169
                 478999**************9987778899998877541114556778888999999999964689999**************************98 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   2.7      0.16        42      24      65 ..      20      61 ..      11     108 .. 0.56
   2 ?    3.0   0.3      0.36        94      52     100 ..      74     123 ..      70     140 .. 0.69
   3 ?    9.4   2.0    0.0037      0.98      14      86 ..     143     216 ..     138     222 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.16
     DUF1043 24 kkqkklekelekakaeleeqkqeledHfaqsaelLetlaedy 65
                ++  +l++ + ++k++++e k+e+++ ++   e L +l+++ 
  CCD26275.1 20 EQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSL 61
                344566777777777777777777777777777666666554 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.36
     DUF1043  52 aqsaelLetlaedyqkLyqhlaksseeLlp.eleeqelfqqkkleekkae 100
                 ++ ++l+++l++d ++L++++   ++     + ++ +++++++ +++++e
  CCD26275.1  74 NKKQNLVKSLENDLNDLKSKIRDFNSYSNDdTPKNIDNPFSSTAANDDDE 123
                 56778999999999999988876555444434466667776666666655 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0037
     DUF1043  14 lilrltnsklkkqkklekelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeLlp.eleeq 86 
                 l+  + ++ l++q++  +++ ++ ++l+ q q + + ++   +lL+++ e ++ ++ +l+++  +L    ++++
  CCD26275.1 143 LANPFQEQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRGRRQLEWvYEKNK 216
                 556677788999999999******************************************99999954344444 PP

>> FliD_N  Flagellar hook-associated protein 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.6      0.43   1.1e+02      19      52 ..       7      40 ..       1      71 [. 0.69
   2 ?   12.0   1.0   0.00096      0.25      22      67 ..      72     120 ..      62     142 .. 0.57
   3 ?    0.2   0.0       4.9   1.3e+03      27      54 ..     149     176 ..     147     210 .. 0.68

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.43
                XXXXXXXXXXXXXXXHHHHHHHHHHHHHHHHHHH CS
      FliD_N 19 kldkleqkktklewkqsayrelnsklsnlksals 52
                + d+++q  t+++++++ ++++ s+ +n +++++
  CCD26275.1  7 TTDPFDQVVTDTKEQITRLQQFISSSKNTINETK 40
                5577777777788888888877777777776554 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.00096
                 XXXXXXXXXXXXHHHHHHHHHHHHHHHHHHH.HH.XX.GGGGGXEEEEE CS
      FliD_N  22 kleqkktklewkqsayrelnsklsnlksals.al.sk.sstfsakkats 67 
                 +l++k++ +++  +++++l+sk+++++s ++ +  ++  + fs+++a+ 
  CCD26275.1  72 TLNKKQNLVKSLENDLNDLKSKIRDFNSYSNdDTpKNiDNPFSSTAAND 120
                 4566666666666666666666666666332222333445554444443 PP

  == domain 3  score: 0.2 bits;  conditional E-value: 4.9
                 XXXXXXXHHHHHHHHHHHHHHHHHHHHH CS
      FliD_N  27 ktklewkqsayrelnsklsnlksalsal 54 
                 ++ l ++ + + ++   ++nl  +++++
  CCD26275.1 149 EQMLREQDDHLDNIHDTMQNLHLQAQSM 176
                 5666667777777777777777655322 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.4     0.024       6.3      36     149 ..      18     185 ..       7     216 .. 0.65

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.024
        Fez1  36 lkaqlrelrakleekeeeikeleesleektlelevcenelqrk.........kseaellrekvekleeelkelreelselsleeeeaa........... 114
                  k q+  l++ ++++ ++i+e++++++e  +++e+   +l+r+          s+ + +++ v++le++l++l++++++ ++ +++ +           
  CCD26275.1  18 TKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSlvimgdtvdASTLNKKQNLVKSLENDLNDLKSKIRDFNSYSNDDTpknidnpfsst 116
                 455666666666666666666666666666666666666666699999966544444444556788999999999888876655555577888888888 PP

        Fez1 115 ..............................lesdeakaqrqe.......aeeleelkreverlraeLkeerq 149
                                                + +  ++   +       ++++++l+ + + + +eL+ + q
  CCD26275.1 117 aandddedddlddfktvdvnheasgglanpFQEQMLRE---QddhldniHDTMQNLHLQAQSMGQELEDQGQ 185
                 88888888777777777777777777765522222223...1233555656666666666666666665544 PP

>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.2    0.0033      0.87      17     108 ..      29     110 ..      15     121 .. 0.83
   2 ?    3.3   0.1      0.38     1e+02      53     128 ..     158     222 ..     135     224 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0033
     DUF1690  17 LessketdasraqalekliqerVaeeLkkLraeeeetlkkfeeklekellkdeadakdelsskalnekieeLrkkleefkkkeeeklpeeve 108
                 ++ssk+t  +++ ++++ iq+ V+e L  L    ++ l  + +++++++l+++     +   k+l++++++L++k+ +f++  ++++p++++
  CCD26275.1  29 ISSSKNTINETKDEIDEIIQD-VEETLVDL----NRSLVIMGDTVDASTLNKK-----QNLVKSLENDLNDLKSKIRDFNSYSNDDTPKNID 110
                 466777777888899998886.99999999....8888889999999999988.....678999****************999988877766 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.38
     DUF1690  53 tlkkfeeklekellkdeadakdelsskalnekieeLrkkleefkkkeeeklpeeveeareevveClrenkgkpLdC 128
                  l++++++           ++ +l+ +++ +++e+  + l+e+++  +    +++++ r+++   +++nk++  dC
  CCD26275.1 158 HLDNIHDT----------MQNLHLQAQSMGQELEDQGQLLDEMDEGMS-GVMHKLSRGRRQLEWVYEKNKERYNDC 222
                 22222222..........335556666666677776666666555555.667777777777777777777776666 PP

>> PIN_8  PIN like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.1    0.0054       1.4      44     125 ..      28     109 ..      18     122 .. 0.73
   2 ?    5.2   0.6     0.065        17      80     163 ..     133     220 ..     107     223 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0054
       PIN_8  44 fqrnresviskekkayedlekeleklkkaaekkleealkkwakkkaldteelrkelkkqleelkeelkaeleelkksskadk 125
                 f    +++i++ k+ ++++ +++e+   +++++l  + ++ ++++  ++++l k+l++ l++lk++++   +  ++++++++
  CCD26275.1  28 FISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDASTLNKKQNLVKSLENDLNDLKSKIRDFNSYSNDDTPKNI 109
                 66667778888888888888888888888887777777777777777799****************9544444555554444 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.065
       PIN_8  80 alkkwakkkald...teelrkelkkqleelkeelkaeleelkksskadkeedpilkkleellegkigeals.keeleelvkegekRye 163
                 ++ +++++  l+   +e++ +e +++l+++++++++ + ++++  ++ +++ ++l++++e ++g   +      +le +++++++Ry+
  CCD26275.1 133 VDVNHEASGGLAnpfQEQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRgRRQLEWVYEKNKERYN 220
                 4444444444447777888889999999999999888999999999999999999999999886665544314556999999999997 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.1     0.018       4.7      48     109 ..      35      95 ..      15      97 .. 0.60
   2 ?    3.4   0.5      0.32        85      24      92 ..     155     192 ..     138     222 .. 0.56

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.018
  TMF_TATA_bd  48 eivklmkeneelkelkkeleelekeleelqeryetl.....LellGeksEeveELraDvaDlKemyk 109
                          ne+++e ++ ++++e+ l +l++ +  +        l +k+  v+ L++D++DlK  ++
   CCD26275.1  35 T------INETKDEIDEIIQDVEETLVDLNRSLVIMgdtvdASTLNKKQNLVKSLENDLNDLKSKIR 95 
                  3......3555666666666666666666665543311112357889****************8665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.32
  TMF_TATA_bd  24 lEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqeryetlLellGeksE 92 
                   +                               + l++ ++++++l  + +++ +++e   +ll e +E
   CCD26275.1 155 QD-------------------------------DHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDE 192
                  33...............................334444444444444444444444444444444443 PP

>> USP8_interact  USP8 interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.7    0.0006      0.16       4      67 ..      13      77 ..      11      98 .. 0.88
   2 ?    1.0   0.5       1.2   3.3e+02       6      39 ..     152     185 ..     147     219 .. 0.53

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0006
  USP8_interact  4 elvqkqqqkiaelkkevaeqkqqlseqkrel.ellkeyiralrstnpvlraladqlerdevlrWv 67
                   ++v++ +++i++l++ +++ k+ ++e k+e+ e+++++  +l   n +l  ++d+++ +++ +  
     CCD26275.1 13 QVVTDTKEQITRLQQFISSSKNTINETKDEIdEIIQDVEETLVDLNRSLVIMGDTVDASTLNKKQ 77
                   689999************************956899999*************9999998887644 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 1.2
  USP8_interact   6 vqkqqqkiaelkkevaeqkqqlseqkrelellke 39 
                    +++q +++ ++++++++ + q ++  +ele   +
     CCD26275.1 152 LREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQ 185
                    4555555555555555555555555555443333 PP

>> EspB  Enterobacterial EspB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.6    0.0018      0.48     161     196 ..      28      63 ..       7      70 .. 0.83
   2 ?    2.7   0.5      0.41   1.1e+02     157     193 ..     147     183 ..      73     195 .. 0.81

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0018
        EspB 161 nleeykktvresqDkiasvlqdlrstardlndlinr 196
                  + + k+t++e++D+i +++qd+ +t+ dln  +  
  CCD26275.1  28 FISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVI 63 
                 5678899*********************99976655 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.41
        EspB 157 lqesnleeykktvresqDkiasvlqdlrstardlndl 193
                 +qe++l e+  +++ ++D + +   +++s+ ++l+d 
  CCD26275.1 147 FQEQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQ 183
                 7888888888888888888888877777777776654 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.4    0.0037      0.97       5      82 ..      17      96 ..      13     102 .. 0.82
   2 ?    2.3   0.3      0.64   1.7e+02      71      93 ..     164     186 ..     145     222 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0037
  TPR_MLP1_2  5 sleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreel..nelkaeiaelkaeaes 82
                  +e+i++l++ ++++++++++ ++++ +  + ++e   +  r lv   ++v++ +  +++   ++l++++++lk++  +
  CCD26275.1 17 DTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDASTLNKKQNlvKSLENDLNDLKSKIRD 96
                56889999999999999999999999999999999999999999998888888777777776668899999998888765 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.64
  TPR_MLP1_2  71 aeiaelkaeaesakaeleesees 93 
                 +++++l  +a+s  +ele + + 
  CCD26275.1 164 DTMQNLHLQAQSMGQELEDQGQL 186
                 33333333333333333333222 PP

>> Noelin-1  Neurogenesis glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.2       2.3   6.2e+02      65      88 ..      25      48 ..       4      69 .. 0.57
   2 ?    3.5   0.8      0.27        71      41      93 ..      47      97 ..      38     110 .. 0.63
   3 ?    9.4   0.3    0.0039         1      38      86 ..     149     197 ..     143     211 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 2.3
    Noelin-1 65 dlqyvrktetllktlesklkvvee 88
                  q+++++++ +++ +++++++ +
  CCD26275.1 25 LQQFISSSKNTINETKDEIDEIIQ 48
                234444444444444444444433 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.27
    Noelin-1 41 lrqllekvqnlsqsievldlRtsrdlqyvrktetllktlesklkvveedrkel 93
                +++++e   +l +s+ ++    + d   ++k ++l+k+le+ l++++++ +  
  CCD26275.1 47 IQDVEETLVDLNRSLVIMGD--TVDASTLNKKQNLVKSLENDLNDLKSKIRDF 97
                66666666666666655543..2344556677777777777777777665544 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0039
    Noelin-1  38 srqlrqllekvqnlsqsievldlRtsrdlqyvrktetllktlesklkvv 86 
                 ++ lr+  ++  n+ ++++ l+l  ++  q++++  +ll+++++ ++ v
  CCD26275.1 149 EQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGV 197
                 67899999********************************999876654 PP

>> BshC  Bacillithiol biosynthesis BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.0    0.0013      0.34     401     495 ..      11     102 ..       3     109 .. 0.81
   2 ?    1.0   0.2      0.51   1.3e+02     422     471 ..     163     211 ..     128     221 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0013
                 HHHHHH-SHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH CS
        BshC 401 vedlfekleelkkklveeaseleldelfeeakeeleeafealkelaakidktleklveanekkilkqlekLekkllkaekrkheeelrqlekikn 495
                 +++++++++e +++l + +s+ + +  ++e+k+e++e++++++e++  ++++l  + ++  + +l++ ++L k l++   +  ++++r++++ +n
  CCD26275.1  11 FDQVVTDTKEQITRLQQFISSSKNT--INETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDASTLNKKQNLVKSLENDL-NDLKSKIRDFNSYSN 102
                 5678888888888888888888877..*******************************999999999999998877654.455666666666655 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.51
                 HHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGHHHHHHHHHHHHHHHHHH CS
        BshC 422 leldelfeeakeeleeafealkelaakidktleklveanekkilkqlekL 471
                 ++  + ++ +++++ +++e+  +l+ ++d+ +++++++  ++ ++qle++
  CCD26275.1 163 HDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHK-LSRGRRQLEWV 211
                 12223344455666666666666666777777666554.33444555555 PP

>> Fzo_mitofusin  fzo-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1       1.2   3.1e+02     113     141 ..       7      35 ..       3      43 .. 0.65
   2 ?    6.7   3.4     0.018       4.7      92     156 ..      32      98 ..      12     101 .. 0.79
   3 ?    2.8   0.1      0.29        75     124     154 ..     152     182 ..     138     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 1.2
  Fzo_mitofusin 113 tekeleeeikelekeiekleevqkkakll 141
                    t++ +++ +++ +++i++l++ ++++k  
     CCD26275.1   7 TTDPFDQVVTDTKEQITRLQQFISSSKNT 35 
                    55555666677777888888777777754 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.018
  Fzo_mitofusin  92 shqvqqelsstfarlcqqvdetekeleeeikelekei..ekleevqkkakllrnkaslleseLekfe 156
                    s+   +e +  ++++ q+v+et  +l++++  +  ++  ++l++ q+  k l n  + l+s++++f+
     CCD26275.1  32 SKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVdaSTLNKKQNLVKSLENDLNDLKSKIRDFN 98 
                    455667778888999999999999999999888776622579999*****************99997 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.29
  Fzo_mitofusin 124 lekeiekleevqkkakllrnkaslleseLek 154
                    l+++ ++l++++ +++ l+ +a+++ +eLe+
     CCD26275.1 152 LREQDDHLDNIHDTMQNLHLQAQSMGQELED 182
                    4555667777777777777777777777765 PP

>> Serine_rich  Serine rich protein interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.5    0.0011      0.28      16     128 ..      17     130 ..       5     135 .. 0.62
   2 ?    1.5   0.4         1   2.7e+02      76     100 ..     167     191 ..     148     221 .. 0.59

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.0011
  Serine_rich  16 evesavskLlsfvsskWRskenleanlqeirlavdrlrtslrefleFargalanaaklsdknlqtkLrkqlqkledsdqilqetsqeLdsceWsleal 113
                  + ++ +++L +f+ss+  + ++ + +++ei + v++    l+  l    +++  ++  + +nl + L++ l+ l+ + + + + s++  ++  +++  
   CCD26275.1  17 DTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDASTLNKKQNLVKSLENDLNDLKSKIRDFNSYSND--DTPKNIDNP 112
                  677899*******98877777777777776666666666666656666666666666666777777777777776665555555444..222233333 PP

  Serine_rich 114 asdkkqek...pddlDrl 128
                   s+++++    +ddlD +
   CCD26275.1 113 FSSTAANDddeDDDLDDF 130
                  333333322337778776 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 1
  Serine_rich  76 knlqtkLrkqlqkledsdqilqets 100
                  +nl+ + +   q+led+ q+l e+ 
   CCD26275.1 167 QNLHLQAQSMGQELEDQGQLLDEMD 191
                  3444444444455555555554444 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   7.1     0.003      0.79      47     125 ..       4      94 ..       1     101 [. 0.50
   2 ?    4.4   0.4      0.14        38     104     126 ..      73      95 ..      64     137 .. 0.67
   3 ?    1.2   0.2       1.5   3.9e+02      47      63 ..     162     178 ..     143     221 .. 0.48

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.003
                 CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC...........CH.HHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  47 isnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketida...........qe.snirvLqnvlesneqkiqkLeqdi 125
                 i+++t   +++v+++k+++++ q+  + ++n+i++ ++e++e i++++et+++              s++++ qn+++s+e+++++L+++i
  CCD26275.1   4 IEQTTDPFDQVVTDTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDlnrslvimgdtVDaSTLNKKQNLVKSLENDLNDLKSKI 94 
                 4455555555555555555555555555555555555555555555555544300000001111223666666777777777777777776 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.14
                 HHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha 104 irvLqnvlesneqkiqkLeqdid 126
                 +++ qn+++s+e+++++L+++i 
  CCD26275.1  73 LNKKQNLVKSLENDLNDLKSKIR 95 
                 44445555555555555555543 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 1.5
                 CCCHHHHHHHHHHHHHH CS
   Fib_alpha  47 isnstkeaeelvkeikd 63 
                 i+++ ++ +   +++ +
  CCD26275.1 162 IHDTMQNLHLQAQSMGQ 178
                 22222222222222222 PP

>> YlqD  YlqD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.9     0.061        16      53      88 ..      17      52 ..       4      71 .. 0.82
   2 ?    1.1   0.1       1.8   4.9e+02      14      38 ..      72      96 ..      62     111 .. 0.76
   3 ?    8.7   1.5    0.0083       2.2      17      56 ..     147     186 ..     143     221 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.061
        YlqD 53 qsaqqieeiqeqvekekserlekkkqllqqleqvqk 88
                 +++qi+++q+ ++  k+ ++e+k+++++ +++v++
  CCD26275.1 17 DTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEE 52
                345599999999999999999999999999999975 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 1.8
        YlqD 14 TeklKeelqqqlqaqieqldkelqq 38
                T + K++l ++l+++++ l+++++ 
  CCD26275.1 72 TLNKKQNLVKSLENDLNDLKSKIRD 96
                4566777777777777777776665 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0083
        YlqD  17 lKeelqqqlqaqieqldkelqqLefqakrlikeikkqsaq 56 
                 ++e+++++ +++++++   +q+L++qa+ + +e++ q + 
  CCD26275.1 147 FQEQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQL 186
                 57899999**************************987643 PP

>> DUF4549  Domain of unknown function (DUF4549)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2       6.4   1.7e+03      15      30 ..      30      45 ..      17      62 .. 0.57
   2 ?    6.7   0.0     0.021       5.7       5      33 ..      71      99 ..      67     121 .. 0.82
   3 ?    2.3   0.1       0.5   1.3e+02      10      48 ..     162     200 ..     158     217 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 6.4
     DUF4549 15 keLakeleeLkteiee 30
                 + ++ ++e k+ei+e
  CCD26275.1 30 SSSKNTINETKDEIDE 45
                3444445555555544 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.021
     DUF4549  5 sssekvkelekeLakeleeLkteieekev 33
                s+ +k ++l k+L+++l++Lk++i + + 
  CCD26275.1 71 STLNKKQNLVKSLENDLNDLKSKIRDFNS 99
                6678999*****************99654 PP

  == domain 3  score: 2.3 bits;  conditional E-value: 0.5
     DUF4549  10 vkelekeLakeleeLkteieekevlkgkkskslssvslp 48 
                 +++  ++L+ + +++ +e+e+++ l +++   +s v   
  CCD26275.1 162 IHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHK 200
                 556678899999999999999999999999999988654 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1      0.28        73      15      33 ..       9      27 ..       2      35 .. 0.76
   2 ?    8.3   0.3      0.01       2.6       9      40 ..      35      81 ..      29      82 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.28
                THHHHHHHHHHHHHHHHHH CS
     Osmo_CC 15 dnIEqkvedideeIaaLee 33
                d   q v d  e+I++L++
  CCD26275.1  9 DPFDQVVTDTKEQITRLQQ 27
                5556788999999999986 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.01
                XXXXXXTHHHHHHHHHHHHHHHHHH...............HHHHHHH CS
     Osmo_CC  9 lLqehYdnIEqkvedideeIaaLee...............kRqrLvd 40
                  +e+ d+I + ++d++e + +L+                k+q+Lv+
  CCD26275.1 35 TINETKDEIDEIIQDVEETLVDLNRslvimgdtvdastlnKKQNLVK 81
                56778899999999999999999989999999999999999999996 PP

>> Occludin_ELL  Occludin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   3.2     0.043        11      26     100 ..      24      98 ..      10      99 .. 0.48
   2 ?    3.3   0.8      0.52   1.4e+02      26      81 ..     161     216 ..     148     222 .. 0.60

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.043
  Occludin_ELL  26 elhaeleevskkfseLerelkelkegsk.eykkieeeilqeykklkkdpeyqekkkrceyLkekLshiKklikeyd 100
                   +l++ +++ +++++e ++e++e  ++ + +  +++++ l    +    ++  +k++ ++ L++ L+ +K++i++++
    CCD26275.1  24 RLQQFISSSKNTINETKDEIDEIIQDVEeTLVDLNRS-LVIMGDTVDASTLNKKQNLVKSLENDLNDLKSKIRDFN 98 
                   2333333333333333333333333333222222222.22222222334455666667899999999999999986 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.52
  Occludin_ELL  26 elhaeleevskkfseLerelkelkegskeykkieeeilqeykklkkdpeyqekkkr 81 
                   ++h+ ++++  + + + +el+++ +  +e+++ ++ +++++++ +++ e+  +k++
    CCD26275.1 161 NIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRGRRQLEWVYEKNK 216
                   44555555555555555666666666668888888888888877775554444443 PP

>> YkyA  Putative cell-wall binding lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   5.6     0.025       6.6      50     102 ..       2      53 ..       1     103 [. 0.74
   2 ?    3.0   0.3      0.28        73      39     114 ..     149     219 ..     144     222 .. 0.57

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.025
        YkyA  50 dkikklsdealenveeReellekekesieeakeefekikeeieei.edeelkke 102
                 d i++  d   + v + +e++   ++ i+++k+ +++ k+ei+ei + + +++ 
  CCD26275.1   2 DGIEQTTDPFDQVVTDTKEQITRLQQFISSSKNTINETKDEIDEIiQ-D-VEET 53 
                 56788888888888888888888888999999999999999999942.2.3333 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.28
        YkyA  39 eeiielgmdefdkikklsdealenveeReellekekesieeakeefekikeeieeiedeelkkeaeelieameery 114
                 e+++  + d++d+i++  +++   ++   ++le + + ++e  e ++ +  +++       + ++e ++e+ +ery
  CCD26275.1 149 EQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRG-----RRQLEWVYEKNKERY 219
                 45555555556666666666666666666666666666666666666555554444.....555666666666666 PP

>> Prefoldin  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.0    0.0038         1       9      57 ..      19      69 ..      11      73 .. 0.56
   2 ?    2.6   0.1      0.47   1.2e+02      12     109 ..      77      96 ..      68     116 .. 0.56
   3 ?   -0.3   0.2       3.7   9.7e+02      15      34 ..     152     171 ..     148     187 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0038
                HHHHHHHHHHHHHHHHHHHHHHHHTT...-TT-EEEEEEETTEEEEEE--S CS
   Prefoldin  9 qaelaqlkeaieelektletlktlkk..edegkevlvplgaglyvkaevkd 57
                 +++++l++ i++ ++t++  k+ ++   ++ +e+lv+l+ +l + ++ +d
  CCD26275.1 19 KEQITRLQQFISSSKNTINETKDEIDeiIQDVEETLVDLNRSLVIMGDTVD 69
                444555555554444444443333334555788888888888887777665 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.47
                 HHHHHHHHHHHHHHHHHHHHHTT.-TT-EEEEEEETTEEEEEE--STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
   Prefoldin  12 laqlkeaieelektletlktlkkedegkevlvplgaglyvkaevkdtdkvlvdlGagyyveksleeAiellkkkleelekqlekleeeleklkdqitt 109
                 ++                                                                               +++le++l++lk++i  
  CCD26275.1  77 QNL------------------------------------------------------------------------------VKSLENDLNDLKSKIRD 96 
                 333..............................................................................34444444444444433 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 3.7
                 HHHHHHHHHHHHHHHHHHTT CS
   Prefoldin  15 lkeaieelektletlktlkk 34 
                 l+e+ ++l+++ +t ++l  
  CCD26275.1 152 LREQDDHLDNIHDTMQNLHL 171
                 45555555555555555544 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   6.9      0.13        35      40      94 ..      12      63 ..       3     110 .. 0.63
   2 ?    6.6   2.9     0.041        11      40      93 ..     149     202 ..      95     214 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.13
                HHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHHH CS
       DUF16 40 eakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLqk 94
                ++ v+  +eqi +l+q ++   + i+e k e++   +    v+etl  + ++L  
  CCD26275.1 12 DQVVTDTKEQITRLQQFISSSKNTINETKDEIDEIIQ---DVEETLVDLNRSLVI 63
                4445555566666666666666666555555554444...333333333333333 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.041
                 HHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH.......HHHHHHHHHH CS
       DUF16  40 eakvdklgeqinkleqkvekqgekikelkveqkaqgeelnkvdetleliletLq 93 
                 e+ ++ ++ ++++++++++++  + + + +e + qg+ l+++de +  +++ L 
  CCD26275.1 149 EQMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLS 202
                 333346666666666777777777777777777777777777777666666654 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.6     0.031       8.2     230     283 ..       4      57 ..       1      64 [. 0.77
   2 ?    2.1   0.1      0.14        36     236     295 ..     161     220 ..     149     223 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.031
  V_ATPase_I 230 fgaklyelpeseeereeklkeveeriedlekvleqteealkevleeiakeleew 283
                 ++ ++ ++++  ++ +e+++++++ i+  ++++++t+++++e+++++ ++l ++
  CCD26275.1   4 IEQTTDPFDQVVTDTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDL 57 
                 556666777778888899999999999999999999999999998888776554 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.14
  V_ATPase_I 236 elpeseeereeklkeveeriedlekvleqteealkevleeiakeleewklkvkkekaiyh 295
                 +++++ ++ + +++++ +++ed  ++l++++e ++ v++++++  ++++++ +k+k+ y+
  CCD26275.1 161 NIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLSRGRRQLEWVYEKNKERYN 220
                 567778888899999999***********************9999999999999998875 PP

>> PhaP_Bmeg  Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.8       0.6   1.6e+02      37      61 ..      27      51 ..       2      71 .. 0.44
   2 ?   10.4   0.5    0.0017      0.45      38      93 ..      72     127 ..      66     141 .. 0.84
   3 ?    1.4   0.3         1   2.7e+02      37      71 ..     150     184 ..     137     202 .. 0.76

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.6
   PhaP_Bmeg 37 kalkqqqdlvkeltkalselekesk 61
                + +   ++ ++e++++++e+ ++  
  CCD26275.1 27 QFISSSKNTINETKDEIDEIIQDVE 51
                1122222222222222222222222 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.0017
   PhaP_Bmeg  38 alkqqqdlvkeltkalselekeskqltaeledqlqktvenlrskaGnkvednieEw 93 
                 +l+++q+lvk+l + l++l+ + +++++  +d   k ++n  s +  +++d+ +++
  CCD26275.1  72 TLNKKQNLVKSLENDLNDLKSKIRDFNSYSNDDTPKNIDNPFSSTAANDDDEDDDL 127
                 899***********************************997666666666665555 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 1
   PhaP_Bmeg  37 kalkqqqdlvkeltkalselekeskqltaeledql 71 
                 + l++q d + ++ + +++l+ + + +  eledq 
  CCD26275.1 150 QMLREQDDHLDNIHDTMQNLHLQAQSMGQELEDQG 184
                 56777777777777777777777777777777664 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.2    0.0024      0.62      13      99 ..      13      97 ..       5     103 .. 0.88
   2 ?    0.9   0.9       2.1   5.7e+02      77     104 ..     154     181 ..     148     220 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.0024
     DUF4200 13 ealeakkeeiqrleealkqreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekl 99
                + +   ke+i rl++ +++ ++ +++++ e+ e ++ +++ l + ++  +     ++  + +k  k++ +k l++++++lks+i+ +
  CCD26275.1 13 QVVTDTKEQITRLQQFISSSKNTINETKDEIDEIIQDVEETLVDLNRSLVIMGDTVDASTLNK--KQNLVKSLENDLNDLKSKIRDF 97
                5667789*******************************************9999999888766..5678999*********999876 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 2.1
     DUF4200  77 ekeaeikklkaeietlkseiekleekle 104
                 e +  + ++++ +++l+ + + + ++le
  CCD26275.1 154 EQDDHLDNIHDTMQNLHLQAQSMGQELE 181
                 3333344444444444444444444433 PP

>> Med9  RNA polymerase II transcription mediator complex subunit 9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.7     0.019       4.9      18      57 ..      12      52 ..       1      68 [. 0.49
   2 ?    4.4   0.4      0.15        39      13      39 ..      73      98 ..      65     105 .. 0.80
   3 ?    2.1   0.5       0.8   2.1e+02      38      76 ..     152     190 ..     150     194 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.019
        Med9 18 nlsskdletktgelrhkLkkarelirelpg.idrsveeqea 57
                 + ++d++ ++  l++ +++ ++ i+e ++ id+ +++ e+
  CCD26275.1 12 DQVVTDTKEQITRLQQFISSSKNTINETKDeIDEIIQDVEE 52
                33444444444444444444444444444444444444444 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.15
        Med9 13 iekdpnlsskdletktgelrhkLkkar 39
                ++k + + +k le+ +++l+ k+  + 
  CCD26275.1 73 LNKKQ-NLVKSLENDLNDLKSKIRDFN 98
                45555.9999************98765 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.8
        Med9  38 arelirelpgidrsveeqeaeieeleeqlakKrelLkky 76 
                  re+ + l++i  ++++   + +++ ++l+ + +lL + 
  CCD26275.1 152 LREQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEM 190
                 577788899999999999999999999999999999875 PP

>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2      0.36        94       2      21 ..      21      40 ..      20      61 .. 0.80
   2 ?    5.3   3.4     0.092        24       4      53 ..     153     202 ..     149     210 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.36
   V-SNARE_C  2 rllresdrlknShrivdeti 21
                ++ r ++ + +S++ ++et 
  CCD26275.1 21 QITRLQQFISSSKNTINETK 40
                67788888999999999885 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.092
   V-SNARE_C   4 lresdrlknShrivdetisiGaailedLhsQretLkrarsklhnvanrlg 53 
                     d+l+n h  +  +  +++++ ++L  Q + L    + +++v  +l 
  CCD26275.1 153 REQDDHLDNIHDTMQNLHLQAQSMGQELEDQGQLLDEMDEGMSGVMHKLS 202
                 4456899999***********************99988887777776665 PP

>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.3      0.51   1.4e+02      51      80 ..      32      61 ..       5      72 .. 0.56
   2 ?   10.6   0.4    0.0016      0.43      57      90 ..      71     104 ..      66     106 .. 0.89
   3 ?    0.9   2.4       1.7   4.4e+02      57      88 ..     150     181 ..     144     185 .. 0.69

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.51
                HHHHHHHHHTTHCHCCCHCTSSSSHHHHCT CS
       Sec2p 51 kneklkeqLkeketlleslqeqLkeLkevl 80
                 ++ ++e  +e ++++++ +e L +L + l
  CCD26275.1 32 SKNTINETKDEIDEIIQDVEETLVDLNRSL 61
                333334444445566666666666666555 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0016
                 HHHTTHCHCCCHCTSSSSHHHHCTTTXXXXXXXX CS
       Sec2p  57 eqLkeketlleslqeqLkeLkevlekmeeeseeq 90 
                 + L+ k++l++sl+++L++Lk+++ ++++ s+++
  CCD26275.1  71 STLNKKQNLVKSLENDLNDLKSKIRDFNSYSNDD 104
                 5799*********************999887765 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 1.7
                 HHHTTHCHCCCHCTSSSSHHHHCTTTXXXXXX CS
       Sec2p  57 eqLkeketlleslqeqLkeLkevlekmeeese 88 
                 + L+e++  l++  + +++L    ++m +e e
  CCD26275.1 150 QMLREQDDHLDNIHDTMQNLHLQAQSMGQELE 181
                 55777777777777777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2245  (0.125216); expected 358.6 (0.02)
Passed bias filter:                     1054  (0.0587874); expected 358.6 (0.02)
Passed Vit filter:                       193  (0.0107647); expected 17.9 (0.001)
Passed Fwd filter:                        82  (0.0045736); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              68  [number of targets reported over threshold]
# CPU time: 0.93u 0.33s 00:00:01.26 Elapsed: 00:00:00.49
# Mc/sec: 1474.94
//
Query:       CCD26276.1  [L=1066]
Description: hypothetical protein NDAI_0H01020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.9e-65  219.0   0.0      1e-64  218.5   0.0    1.3  1  Pkinase         Protein kinase domain
    3.2e-30  105.3   0.0    5.1e-30  104.6   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    9.5e-09   35.0   0.0    1.6e-08   34.2   0.0    1.4  1  Kinase-like     Kinase-like
     0.0043   15.9   0.0      0.014   14.2   0.0    1.8  1  Pkinase_fungal  Fungal protein kinase
     0.0087   15.4   0.0      0.015   14.7   0.0    1.3  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.017   15.1   0.0    1.3  1  APH             Phosphotransferase enzyme family
      0.015   14.9   0.1      0.077   12.6   0.0    2.1  2  RIO1            RIO1 family
      0.016   14.9   1.1        3.3    7.3   0.0    2.5  2  FTA2            Kinetochore Sim4 complex subunit FTA2
       0.13   12.5   0.6       0.38   11.0   0.1    2.0  2  SpoU_sub_bind   RNA 2'-O ribose methyltransferase substrate b


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.5   0.0   5.1e-68     1e-64       3     264 .]      13     291 ..      11     291 .. 0.92

  Alignments for each domain:
  == domain 1  score: 218.5 bits;  conditional E-value: 5.1e-68
                 EEEEEEEESSEEEEEEEETTT.TEEEEEEEEECHCHCHHHH.HHHHHH...HHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase   3 kleklGeGsfGkVykaveket.gkivAvKkikkekakkkke.kkvlrE...ikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgsls 96 
                  +e+lG+Gs+++Vykav+k++ +k +A+K+ +k ++ k+++ k v+ E   +++l++ +hp iv+ly++f+++++ly+vl+y++ggel +ll++ +++s
  CCD26276.1  13 FKEELGHGSYSTVYKAVDKRNiKKVYAIKVCSKAHIIKESKvKYVTIEkntLNLLARANHPGIVKLYYTFHDEENLYFVLDYAPGGELLSLLHKMKTFS 111
                 6899*************876537889**********99999866666622256677777***********************************99*** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.............BCTTTSCGGGS-HHHHTTSCBSHHHHHHH CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.............ltsfvgtseYlAPEvlkeneyskkvDvWs 182
                 e+ ak+++ q++  ley+Hs+giiHrDlKpeN+L++++g+l+itDFG a+  +sss+              +sfvgt eY++PE+l +n+ +  +DvW+
  CCD26276.1 112 ESWAKHFTVQLVDTLEYIHSQGIIHRDLKPENVLLNKEGKLMITDFGAASTSNSSSSssaddldnsnnhsSSSFVGTAEYVSPELLLYNQCGFGSDVWA 210
                 ****************************************************999999************9**************************** PP

                 HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 183 lGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 lG++++++++g ppf+ge++ +++ek++       +i +    +  +  ++++ +++l++k+l+ d  kR++ ++++ +p++
  CCD26276.1 211 LGCMIFQFINGFPPFRGENELKTFEKIVAL-DYPWNISNSIVSDNYRVGDVNPLIINLVRKILTLDVDKRISLKQMKLDPWF 291
                 ****************99999988877766.66777777777888888899******************************8 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.6   0.0   2.6e-33   5.1e-30       3     218 ..      13     237 ..      11     257 .. 0.80

  Alignments for each domain:
  == domain 1  score: 104.6 bits;  conditional E-value: 2.6e-33
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS.SHHHHHHHHH....HHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeea.teeekeelle....eakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkk 95 
                  ++++lG+G++++V+++  k   ++ +   a+K++++ +  +e+k + ++     ++++ + +hp ivkl+    +ee+l++v++y++gG+Ll+ L+k 
   CCD26276.1  13 FKEELGHGSYSTVYKAVDK---RNIKKVYAIKVCSKAHiIKESKVKYVTieknTLNLLARANHPGIVKLYYTFHDEENLYFVLDYAPGGELLSLLHKM 107
                  789*************999...555666677777443313333333322212367888889************************************8 PP

                  CTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE..........EETTSSTSGGGGS-HHHHHHSEEE CS
  Pkinase_Tyr  96 ekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey..........vkkeeaklpvkWmapEslkekkft 183
                    ++++ ++  +f++q+ + +ey++s+ ++Hrdl   NvLl+++ +  i+DfG a++ +++++           +++++     ++++pE l ++++ 
   CCD26276.1 108 --KTFSESWAKHFTVQLVDTLEYIHSQGIIHRDLKPENVLLNKEGKLMITDFGAASTSNSSSSSsaddldnsnnHSSSSFVGTAEYVSPELLLYNQCG 203
                  ..99**************************************************9988554443334444332233444446789************* PP

                  HHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHH CS
  Pkinase_Tyr 184 sksDvWsfGvllwEiftlgespypglkneevlekl 218
                    sDvW+ G +++  ++ g  p++g ++ +++ek+
   CCD26276.1 204 FGSDVWALGCMIFQFIN-GFPPFRGENELKTFEKI 237
                  *************9988.99999988777766665 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   8.2e-12   1.6e-08     142     249 ..     112     224 ..      28     278 .. 0.82

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 8.2e-12
  Kinase-like 142 etiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve.....kgfaPpEllgsrggytrknkt...kmthkl 231
                  e  a++  T+ql+    +++++g++h +++++n+ll+++g+lm+++f+a  +   +   s+       + ++   ++g +      + +   +  ++ 
   CCD26276.1 112 ESWAKH-FTVQLVDTLEYIHSQGIIHRDLKPENVLLNKEGKLMITDFGAASTSNSSSS-SSADdldnsNNHSSSSFVGTAEY-VSPELLlynQCGFGS 206
                  445555.68*******************************************999998.54445777799999999999555.4444431226789** PP

  Kinase-like 232 daWqlGlviyriwclklP 249
                  d+W+lG  i+       P
   CCD26276.1 207 DVWALGCMIFQFINGFPP 224
                  **********87655555 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.8e-06     0.014     320     387 ..     127     198 ..     120     208 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 6.8e-06
  Pkinase_fungal 320 rsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddsses..........garertGTleFmaievlk 387
                     +  +  +gi+HrD   +N+l++     +e k ++ D+  a++ +  ss+s          ++   +GT+e+++ e+l 
      CCD26276.1 127 EYIH-SQGIIHRDLKPENVLLN-----KEGKLMITDFGAASTSNSSSSSSaddldnsnnhSSSSFVGTAEYVSPELLL 198
                     5566.89***************.....78999********99997666664555444433337799***999998886 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.5e-06     0.015     108     184 ..     103     175 ..      95     185 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 7.5e-06
         Kdo 108 llakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwrekdLa 184
                 ll k ++++e+  ++   ++  + + +h+ g+ H+dl + n+ll++e+    ++++ D+  a +       +  dL+
  CCD26276.1 103 LLHKMKTFSESWAKHFTVQLVDTLEYIHSQGIIHRDLKPENVLLNKEG----KLMITDFGAASTSNSSSSSSADDLD 175
                 56666667888888888888899999*********************9....9999999888877766666666665 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   0.0   8.4e-06     0.017     165     199 ..     131     163 ..      63     165 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 8.4e-06
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-EEE CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedaglg 199
                 +++++H+Dl+p N+l++++ g++  + Df+ a+++
  CCD26276.1 131 SQGIIHRDLKPENVLLNKE-GKL-MITDFGAASTS 163
                 689**************55.555.488**999876 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.9e-05     0.077      98     154 ..     104     162 ..      85     178 .. 0.78
   2 ?   -1.5   0.0      0.82   1.6e+03      16      51 ..     621     656 ..     611     663 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.9e-05
                 HHHCG-..HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTEEE CS
        RIO1  98 lkdvee..eeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQave 154
                 l+++++  e+ a++   +++++++ +   +g++H DL   Nvl++++ k++i D++ a +
  CCD26276.1 104 LHKMKTfsESWAKHFTVQLVDTLEYIH-SQGIIHRDLKPENVLLNKEgKLMITDFGAAST 162
                 555553336667778888888766665.9***************999999999*987655 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.82
                 EEE-S---SS-HHHHCTTTSTTSTCG--GS-HHHHH CS
        RIO1  16 KiyktstteFkkrkkyvsgekrfkdrksktnprklv 51 
                  +yk +t++++++++  s  +  +++k+++++++ +
  CCD26276.1 621 TLYKNGTLSYRNVDSLSSSPSSAQREKHSSSKNYSS 656
                 589************999999988887777776655 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3    0.0047       9.3      21      58 ..       8      48 ..       2      74 .. 0.69
   2 ?    7.3   0.0    0.0017       3.3     178     212 ..     119     158 ..      73     161 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0047
        FTA2 21 ekdiefleyLgkglhsiVlkvkirgk...eYALKlFrflea 58
                ++d+ f e Lg+g  s V+k+  +++   +YA+K+  + + 
  CCD26276.1  8 PHDFIFKEELGHGSYSTVYKAVDKRNikkVYAIKVCSKAHI 48
                48999***************9655444459****9877744 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0017
        FTA2 178 lpkllrdlkklhklgIvvrDlkeenyi...dgkLv..Dls 212
                 + +l++ l+ +h++gI++rDlk+en++   +gkL+  D++
  CCD26276.1 119 TVQLVDTLEYIHSQGIIHRDLKPENVLlnkEGKLMitDFG 158
                 557889999****************985555665333666 PP

>> SpoU_sub_bind  RNA 2'-O ribose methyltransferase substrate binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00019      0.38       8      67 ..      25      76 ..      22      78 .. 0.81
   2 ?   -2.1   0.0       2.4   4.8e+03      32      55 ..     376     399 ..     358     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00019
  SpoU_sub_bind  8 VleaLksgrriekllvtegradkrleellklakkrgikvelvdkekLdklsgtanHQGvv 67
                   V+ a ++ r+i+k++  +  ++++   +   +k+ ++k+ +++k+ L+ l+ +anH G+v
     CCD26276.1 25 VYKAVDK-RNIKKVYAIKVCSKAH---I---IKESKVKYVTIEKNTLNLLA-RANHPGIV 76
                   6666666.5688888888877777...4...55558***************.*******8 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.4
  SpoU_sub_bind  32 leellklakkrgikvelvdkekLd 55 
                    +  ++++ k++gi+   vd ++++
     CCD26276.1 376 TSSIVEWRKRLGISPNNVDTKIIN 399
                    45789999999****999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1066 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.79u 0.29s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 7099.89
//
Query:       CCD26277.1  [L=431]
Description: hypothetical protein NDAI_0H01030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
        0.1   12.7   0.4        0.1   12.7   0.4    2.2  2  BLOC1S3   Biogenesis of lysosome-related organelles complex 1


Domain annotation for each model (and alignments):
>> BLOC1S3  Biogenesis of lysosome-related organelles complex 1 subunit 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   5.7e-06       0.1      22      70 ..      46      91 ..      35     104 .. 0.72
   2 ?    0.8   0.4     0.027   4.8e+02      40      60 ..     164     186 ..     134     225 .. 0.50

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.7e-06
     BLOC1S3 22 sstvasaagtkvaGEasEtddedeaesqsaeqqqeivekdlpplvvvrd 70
                +s++ +++ + v+GE +E+dd++ +++++     +i+ + lp+ + + +
  CCD26277.1 46 TSQQRKTSEANVQGEQEEDDDDESTSNTTP---LHILARSLPKDLTNDE 91
                344458999**********99998888776...6777777777555544 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.027
     BLOC1S3  40 tddedeaesqsa..eqqqeivek 60 
                  d+++e++++++  e++++i e+
  CCD26277.1 164 IDSDSESNEKQDptESSTRISES 186
                 34444444444432222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      459  (0.025601); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3110.06
//
Query:       CCD26278.1  [L=1420]
Description: hypothetical protein NDAI_0H01040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-18   67.0   6.8    1.5e-18   67.0   6.8    8.4  8  DUF3020   Protein of unknown function (DUF3020)


Domain annotation for each model (and alignments):
>> DUF3020  Protein of unknown function (DUF3020)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -23.5  32.9         1   1.8e+04       7      43 ..     219     256 ..     213     259 .. 0.59
   2 ?   -2.8   2.1      0.54   9.6e+03      26      37 ..     336     347 ..     327     352 .. 0.52
   3 ?   -1.4   5.0      0.19   3.4e+03      20      32 ..     364     376 ..     361     383 .. 0.58
   4 ?  -11.6  13.9         1   1.8e+04       2      14 ..     515     527 ..     512     560 .. 0.53
   5 ?   -9.5  11.0         1   1.8e+04      14      37 ..     584     607 ..     572     615 .. 0.48
   6 ?   -8.8   6.0         1   1.8e+04       4      31 ..     683     688 ..     677     692 .. 0.50
   7 ?   -2.5   0.1      0.44   7.9e+03      27      37 ..    1298    1308 ..    1293    1310 .. 0.86
   8 !   67.0   6.8   8.6e-23   1.5e-18       1      49 []    1317    1365 ..    1317    1365 .. 0.99

  Alignments for each domain:
  == domain 1  score: -23.5 bits;  conditional E-value: 1
     DUF3020   7 KwreaNkekNk.endlrsRvkKrakkkfgkedseeKds 43 
                 K  +  k+kNk + d + + kK +k k++k+++++K++
  CCD26278.1 219 KNKKDKKKKNKaKKDKKHKDKKDKKHKEKKQKDKQKSK 256
                 44444555555234555666677777777777777765 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 0.54
     DUF3020  26 kKrakkkfgked 37 
                 +K++kk   + +
  CCD26278.1 336 SKKKKKSSHNSK 347
                 455444443333 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.19
     DUF3020  20 dlrsRvkKrakkk 32 
                 d+ s+ kK++kkk
  CCD26278.1 364 DSQSKKKKKKKKK 376
                 4555555555554 PP

  == domain 4  score: -11.6 bits;  conditional E-value: 1
     DUF3020   2 kerKkKwreaNke 14 
                 k++KkK+ ++ k+
  CCD26278.1 515 KTSKKKSQKKKKS 527
                 4444444443222 PP

  == domain 5  score: -9.5 bits;  conditional E-value: 1
     DUF3020  14 ekNkendlrsRvkKrakkkfgked 37 
                 +k ke+ +r R  K+  kk +ke+
  CCD26278.1 584 KKAKEEQQRLRDEKKLLKKQEKEK 607
                 344455555554444333333322 PP

  == domain 6  score: -8.8 bits;  conditional E-value: 1
     DUF3020   4 rKkKwreaNkekNkendlrsRvkKrakk 31 
                 rKkK                      +k
  CCD26278.1 683 RKKK----------------------TK 688
                 3333......................22 PP

  == domain 7  score: -2.5 bits;  conditional E-value: 0.44
     DUF3020   27 Krakkkfgked 37  
                  Krak++ +k+d
  CCD26278.1 1298 KRAKQLLSKDD 1308
                  9*****99987 PP

  == domain 8  score: 67.0 bits;  conditional E-value: 8.6e-23
     DUF3020    1 nkerKkKwreaNkekNkendlrsRvkKrakkkfgkedseeKdsWieeeF 49  
                  n+erK+KwreaN  kNk +dl+sR+kKra+  fg+++s eK++W ee+F
  CCD26278.1 1317 NNERKRKWREANTMKNKIHDLKSRLKKRANIVFGPDESSEKTRWLEETF 1365
                  89*********************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3116  (0.173797); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                       226  (0.0126053); expected 17.9 (0.001)
Passed Fwd filter:                        88  (0.00490825); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 2.42u 0.39s 00:00:02.81 Elapsed: 00:00:00.61
# Mc/sec: 7053.66
//
Query:       CCD26279.1  [L=213]
Description: hypothetical protein NDAI_0H01050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-78  262.4   0.0    2.5e-78  262.3   0.0    1.0  1  RNA_Me_trans  Predicted SAM-dependent RNA methyltransferase


Domain annotation for each model (and alignments):
>> RNA_Me_trans  Predicted SAM-dependent RNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.3   0.0   1.4e-82   2.5e-78       1     199 [.       2     207 ..       2     208 .. 0.98

  Alignments for each domain:
  == domain 1  score: 262.3 bits;  conditional E-value: 1.4e-82
  RNA_Me_trans   1 kyviEhleeelseWvllEYrhiakevgaenliltslskasles.lpeelkslakleleke..sveellkelkevkkekvclLDpkaekelspedaee 94 
                   ky+iEh+ee +seWv+lEY++i+++vg+enlil+sl++ ++e+ +p++l +l  ++++k+  ++ + + +lk +++ +vclLDp+ae +l+p+d +e
    CCD26279.1   2 KYIIEHMEEGFSEWVILEYSQILRDVGKENLILSSLPHGTTEKdIPKRLLDLGLQWTTKDliDIPSDFPDLKPLQNGRVCLLDPRAEIDLKPSDVNE 98 
                   69***************************************999*************999999999999*9************************** PP

  RNA_Me_trans  95 fdvflfGGIlGddpprdRTselrkkg...fegRrLGpvqmttDtAvrvtklvvedkvkleeieyvdepelkfnkkesvempfrYvkd.eegkpllpe 187
                   fd+f+fGGIlGd+pprdRTsel++ +   + gRrLG++qmttDtA+r+t+l+v++++k+++i+++d+pe++f+k e++empfrYv+d +++kp+lp+
    CCD26279.1  99 FDYFVFGGILGDHPPRDRTSELKTAYpnlLIGRRLGDKQMTTDTAIRTTQLIVKKQIKFDDIKFMDYPEFRFSKYEATEMPFRYVVDtKTKKPILPQ 195
                   **************************9999********************************************************96779****** PP

  RNA_Me_trans 188 gmlellkkdlek 199
                   gm+el+kkd+++
    CCD26279.1 196 GMMELIKKDSQQ 207
                   *********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       237  (0.0132188); expected 358.6 (0.02)
Passed bias filter:                      206  (0.0114898); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1587.29
//
Query:       CCD26280.1  [L=471]
Description: hypothetical protein NDAI_0H01060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.1e-56  190.6  20.1    7.3e-56  189.4  19.8    1.7  2  PRP3        pre-mRNA processing factor 3 (PRP3)
    7.5e-31  107.2   1.4    7.5e-31  107.2   1.4    3.3  3  DUF1115     Protein of unknown function (DUF1115)


Domain annotation for each model (and alignments):
>> PRP3  pre-mRNA processing factor 3 (PRP3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.25   2.3e+03     143     183 ..      17      57 ..       3      60 .. 0.73
   2 !  189.4  19.8   8.1e-60   7.3e-56       1     222 [.      68     315 ..      68     316 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.25
        PRP3 143 TkkErKklRrqrRkekekekqdkirlGLepppepKvklsNL 183
                  k Er k +++  + +  e++  +  GL  +  p +  sNL
  CCD26280.1  17 PKGEREKRKTNATEHDAVEEEGDVGRGLHTKIHPALLSSNL 57 
                 46677777777777777888888888888888888888887 PP

  == domain 2  score: 189.4 bits;  conditional E-value: 8.1e-60
        PRP3   1 npyldprlka.kvkkrk.kralkfvekGkfikqaeqlrekaqleelkkei...aeeakka............glesdlklaekapkkeedevpndvEWW 82 
                 npyl++  ++ ++k+rk +r  +f ++G+++k+ +++re +++  +++++    e+++++             + +dl+l e+++  + d++p d+EWW
  CCD26280.1  68 NPYLSTFNTQpSTKTRKgQRIQTFFQPGEVSKRIQHERELQRKVLEQERKfneLERQRRTkedevtklkiqnCELPDLALGEDKYIPNVDDIP-DCEWW 165
                 56666443323334444489999************9987666655555553442222222345556666666666677777777777999***.9**** PP

        PRP3  83 Davllkkkekkealkeeekkke.............keeeeesklkkitnyveHPvplkppkektkpaakplyLTkkErKklRrqrRkekekekqdkirl 168
                 D v+l +++k++ l+   k+++             +ee+ee + +++++y++HPvp+k + +++  +++++yLTkkE+Kk+Rr++Rk  ++e  +ki+l
  CCD26280.1 166 DVVYLDTTDKTKILD---KYSMqypsveededfvsDEEDEE-ERHPSIRYIQHPVPIKMELSNQGGRPNKVYLTKKEQKKIRRNKRKLIRQEIDEKIKL 260
                 *****8776555544...44444566666677753333333.688**************99999999999***************************** PP

        PRP3 169 GLepppepKvklsNLmrvl.gdeavqdPtkvEaeVreqmaeRekkHeerNeeRkl 222
                 GLep+p pKvklsN+m+v+ ++++++dPt++E +V++qm+eR++kHee N++R+ 
  CCD26280.1 261 GLEPKPVPKVKLSNMMNVYeNNQNITDPTSWEVTVKQQMEERKRKHEEINQKRHE 315
                 *******************99********************************97 PP

>> DUF1115  Protein of unknown function (DUF1115)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.3      0.28   2.5e+03      70     103 ..     113     140 ..      86     143 .. 0.47
   2 ?   -0.6   2.7      0.14   1.3e+03      56      92 ..     286     323 ..     275     335 .. 0.52
   3 !  107.2   1.4   8.4e-35   7.5e-31       1     145 [.     341     465 ..     341     466 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.28
     DUF1115  70 eeeeekeaakekkeeeekdedekeeekdlsnnkc 103
                 e+e+++++ ++++      +++++e  +l+ ++c
  CCD26280.1 113 EQERKFNELERQR------RTKEDEVTKLKIQNC 140
                 2233333222222......222223333444455 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.14
     DUF1115  56 lrrikWteeer.edeeeeeekeaakekkeeeekdedek 92 
                 +   +W+ + + + ee+++++e++++k++ee  +++++
  CCD26280.1 286 TDPTSWEVTVKqQMEERKRKHEEINQKRHEEAVKKRRE 323
                 55567886663244444444444444333333333333 PP

  == domain 3  score: 107.2 bits;  conditional E-value: 8.4e-35
     DUF1115   1 avfriksLsnpkhrfkvdknAkqlsltGvvllg...pkfnlvvveGgekaikkYkklmlrrikWteeeredeeeeeekeaakekkeeeekdedekeeek 96 
                 +vf++k+L+npk r+k+++n+kql l G+++      + ++++v G+ek++k+Y+kl+l+rikW+e+        e+k                +++ +
  CCD26280.1 341 KVFWFKNLRNPKIRYKLKMNSKQLLLNGLCIRIgddGP-GIIIVVGKEKSCKFYEKLVLNRIKWDENF-------ENKI---------------NGTIV 416
                 59*****************************9988655.**************************998.......1111...............12234 PP

     DUF1115  97 dlsnnkcelvweGevkkrnFkkwkfkeceteeearevLekkgvehywdl 145
                 d +    e++weG++k+++F k ++k c +e+e++++L+++++++++dl
  CCD26280.1 417 DQTGTYSEKIWEGNLKENKFPKLFMKACADEKEFKRILNQFNAQNFMDL 465
                 445556789*************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1928  (0.107535); expected 358.6 (0.02)
Passed bias filter:                      468  (0.026103); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.26s 00:00:00.84 Elapsed: 00:00:00.52
# Mc/sec: 2751.20
//
Query:       CCD26281.1  [L=201]
Description: hypothetical protein NDAI_0H01070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.1e-21   75.7   0.1    5.6e-21   75.2   0.1    1.1  1  PBP       Phosphatidylethanolamine-binding protein


Domain annotation for each model (and alignments):
>> PBP  Phosphatidylethanolamine-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.1   3.1e-25   5.6e-21      13     132 .]      62     195 ..      39     195 .. 0.74

  Alignments for each domain:
  == domain 1  score: 75.2 bits;  conditional E-value: 3.1e-25
                 -EEEEE......S--TTSSEEEEEEEETTSCCTCT.T...EEEEEEEEEETTSSEE-TTC....EE-B-TTSSCCCCS---B--STTS..EEEEEEEE. CS
         PBP  13 Pplsws......dvpegtksyalvviDpDapkvse.t...flHwvvtnipasvtslpega....vqgknslgeesesgYlgpcPpkgdgkHrYvflly. 96 
                 P++++       d+  + ++++lv++DpDap++++ +   f+H+v tni+     +++++     +++n ++     +Y gp+Ppkg+g+HrYv+l y 
  CCD26281.1  62 PQVQFIlndsvkDIN-EDDHFTLVMTDPDAPSRTDkKwseFCHYVETNIK--LDGFARDSeflaSEISNGHEM---MPYKGPGPPKGTGPHRYVLLFYk 154
                 666666666554433.699***********6555543556*********9..555555445665566666555...8*********************7 PP

                 ...EESSSG.....--.BGSS-SHHHHHHH.HC.TTEEEEEEEEEEE CS
         PBP  97 ...aldvea.....ld.lkagftraelgaa.ia.ghvlakatlagnY 132
                    +          +d  ++g+ ++++g++ +a +++l   +la+n+
  CCD26281.1 155 qtpG----VtltkvKDrPNWGYGQPAVGVHkWAsENKLS--LLAVNF 195
                 6662....0334466779***9999999999**999664..466665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       424  (0.0236488); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1454.21
//
Query:       CCD26282.1  [L=387]
Description: hypothetical protein NDAI_0H01080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.3e-71  239.8  17.1      3e-71  239.5  17.1    1.1  1  MAT1          CDK-activating kinase assembly factor MAT1
    2.8e-27   94.4   8.0    4.8e-27   93.6   8.0    1.4  1  zf-C3HC4_5    Zinc finger, C3HC4 type (RING finger)
    0.00038   20.2   4.5    0.00079   19.2   4.5    1.5  1  zf-C3HC4_2    Zinc finger, C3HC4 type (RING finger)
    0.00069   19.9   6.6     0.0012   19.1   6.6    1.4  1  zf-RING_2     Ring finger domain
     0.0011   18.8   5.8     0.0019   18.0   5.8    1.4  1  zf-C3HC4_3    Zinc finger, C3HC4 type (RING finger)
     0.0084   16.0   5.3      0.039   13.8   5.4    2.0  2  zf-C3HC4      Zinc finger, C3HC4 type (RING finger)
      0.009   16.3   4.2      0.011   16.0   1.6    2.2  2  FliS          Flagellar protein FliS
  ------ inclusion threshold ------
       0.06   13.4   6.9       0.14   12.2   6.9    1.6  1  zf-RING_UBOX  RING-type zinc-finger
      0.096   12.7   8.6        1.2    9.1   9.1    2.2  2  zf-RING_5     zinc-RING finger domain
       0.85    9.5   8.8        6.9    6.6   3.3    2.3  2  Prok-RING_4   Prokaryotic RING finger family 4
          1    9.2   8.9        9.4    6.1   9.2    2.1  2  zf-RING_4     RING/Ubox like zinc-binding domain
        2.3    8.0   9.4        3.2    7.5   9.4    1.2  1  DUF1635       Protein of unknown function (DUF1635)
        4.1    7.4   7.9       0.72    9.9   2.6    1.8  2  DUF87         Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> MAT1  CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.5  17.1   2.2e-74     3e-71       1     204 []     104     324 ..     104     324 .. 0.99

  Alignments for each domain:
  == domain 1  score: 239.5 bits;  conditional E-value: 2.2e-74
        MAT1   1 LRknkFrvQiFeDvevekEvdiRkrvlkifNkkeeDF.esLkeYndYLeeveeivfnLtngidveeTekkleqYekenkelIlknkeklkqeeeeleel 98 
                 LRknkF++QiF+Dv+vekEvdiRkrv+ +fNk+ +DF  +Lk++n+YLe+veeiv++L++gidveeTe++l++Ye+ nk+lIl+n e++k+e e++ee+
  CCD26282.1 104 LRKNKFKTQIFDDVGVEKEVDIRKRVFGVFNKDLNDFdGDLKKFNEYLEHVEEIVYKLDHGIDVEETERQLKDYEELNKQLILSNIERNKKEFENFEER 202
                 9************************************99************************************************************ PP

        MAT1  99 eelekeekeekrkeekqeeeeekekkekakeelideLatssk................daeeiiekvkkkakkkkssekekleelnkelkkkatkfssg 181
                 e+++ke++ +kr++e+q+eee+k++ke+ak+e+i++La++s+                +++++ie+vk+++k kkss+++kl+eln+ l+++++++ss+
  CCD26282.1 203 EKFQKEMRLKKRMLERQIEEEDKSNKEWAKREIINRLAAASTsgslssassastsivdNTQDVIESVKSTVKLKKSSARRKLDELNRFLQDNPYFSSSN 301
                 ***************************************9999******************************************************** PP

        MAT1 182 ikfkesllpvpkveeeklypytP 204
                  ++++++l +++++ ++++p+tP
  CCD26282.1 302 PNSTQNTLLYQQQHGGSVIPFTP 324
                 **********************9 PP

>> zf-C3HC4_5  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.6   8.0   3.5e-30   4.8e-27       2      50 ..      52     100 ..      51     101 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.6 bits;  conditional E-value: 3.5e-30
  zf-C3HC4_5   2 eiCPvCkssrYlnpdleflinpeCYhkmCesCvdRlFsdGPnqCPvagC 50 
                 ++CP+Ck++rYl pd++fl+npeCYhk+CesCvdR+Fs GP+qCP+  C
  CCD26282.1  52 DMCPICKTDRYLSPDVKFLVNPECYHKICESCVDRIFSLGPAQCPYKRC 100
                 8***********************************************9 PP

>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   4.5   5.7e-07   0.00079       1      38 [.      53      96 ..      53      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 19.2 bits;  conditional E-value: 5.7e-07
  zf-C3HC4_2  1 kCpiCl.dmlkdpsvvt.....pCgHvfCqkCilrsLeekn.eCP 38
                +CpiC  d++  p +v+     +C H+ C++C++r  + +  +CP
  CCD26282.1 53 MCPICKtDRYLSP-DVKflvnpECYHKICESCVDRIFSLGPaQCP 96
                8****64888888.666688899********************** PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   6.6   8.7e-07    0.0012       1      42 [.      52      97 ..      52     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 8.7e-07
   zf-RING_2  1 deCpIC.leelssads.vlll.pCgHvfhreClerwlrssst.CPl 42
                d+CpIC ++++ s+d   l+  +C H ++++C++r++   +  CP+
  CCD26282.1 52 DMCPICkTDRYLSPDVkFLVNpECYHKICESCVDRIFSLGPAqCPY 97
                69****99999776663333336************98888878996 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   5.8   1.4e-06    0.0019       2      43 ..      51     100 ..      50     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 1.4e-06
                 GSB-TTTSSS.....BS-EEETT.EEEEEE-HHHHHHHHH.TT-B-TT..T CS
  zf-C3HC4_3   2 deeCviCler.....prnvvllp.CgHlvlCeeCaekllk.rkkkCpi..C 43 
                 +++C+iC++      + ++++ p C H  +Ce+C++++ +   ++Cp+  C
  CCD26282.1  51 KDMCPICKTDrylspDVKFLVNPeCYHK-ICESCVDRIFSlGPAQCPYkrC 100
                 789*****9555533445555556****.******************8555 PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.3      0.41   5.6e+02      33      41 .]      49      57 ..      42      57 .. 0.76
   2 !   13.8   5.4   2.8e-05     0.039       1      39 [.      54      96 ..      54      97 .. 0.77

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.41
                TSSB--TTT CS
    zf-C3HC4 33 rkkvkCPlC 41
                ++k  CP+C
  CCD26282.1 49 SNKDMCPIC 57
                677779999 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 2.8e-05
                -TTT-S.--SS-E.....E-TTS--B-CHHHHHHHHCTSSB--T CS
    zf-C3HC4  1 CpiCle.eakepn....elleCkHsfCskCirkilksrkkvkCP 39
                CpiC++  +  p+       eC H++C++C+++i +  +  +CP
  CCD26282.1 54 CPICKTdRYLSPDvkflVNPECYHKICESCVDRIFS-LGPAQCP 96
                888875234444467666679**************9.8999999 PP

>> FliS  Flagellar protein FliS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.6   7.9e-06     0.011      38     100 ..     141     199 ..     133     212 .. 0.88
   2 ?    0.0   0.0      0.73     1e+03      48      81 ..     259     291 ..     233     296 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 7.9e-06
                 TTTHHHHHHHHHHHHHHHHHHHHTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHH CS
        FliS  38 ekdiekkgeaiskaqdIiseLrasLdlekggeiaknLaalYdyiirrlleanlkkdaekldev 100
                 ++d++k++e+++++ +I+ +L++ +d+e   e  ++L++ Y+ ++++l+  n++++++++++ 
  CCD26282.1 141 DGDLKKFNEYLEHVEEIVYKLDHGIDVE---ETERQLKD-YEELNKQLILSNIERNKKEFENF 199
                 5899***********************8...56788877.**************999888765 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.73
                 HHHHHHHHHHHHHTCCTTTSCHHHHHHHHHHHHH CS
        FliS  48 iskaqdIiseLrasLdlekggeiaknLaalYdyi 81 
                 +  +qd+i+  +++++l+k     ++L++l +++
  CCD26282.1 259 VDNTQDVIESVKSTVKLKKS-SARRKLDELNRFL 291
                 56789999999999999885.7788888776665 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   6.9    0.0001      0.14       1      39 []      54      96 ..      54     106 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.0001
  zf-RING_UBOX  1 CpICl.elftdP....lv.lpCGHtFCreClwelskslegafkCP 39
                  CpIC+ + +  P    lv ++C H +C++C+   +  + g  +CP
    CCD26282.1 54 CPICKtDRYLSPdvkfLVnPECYHKICESCV--DRIFSLGPAQCP 96
                  *****9999988876655337**********..455555555555 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.4     0.044        60      35      44 .]      50      59 ..      39      59 .. 0.81
   2 ?    9.1   9.1   0.00089       1.2       2      42 ..      54     100 ..      53     102 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.044
   zf-RING_5 35 keavCpiCrk 44
                +++ CpiC++
  CCD26282.1 50 NKDMCPICKT 59
                5789****95 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00089
   zf-RING_5   2 CnkCfekl..skeekfyl.tsCgHifCekClkkll.ekeavCpi..C 42 
                 C++C +    s++ kf +  +C+H +Ce+C+++ +   +a+Cp   C
  CCD26282.1  54 CPICKTDRylSPDVKFLVnPECYHKICESCVDRIFsLGPAQCPYkrC 100
                 999999888977777655268************99878889986555 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.3    0.0086        12      26      38 ..      47      59 ..      44      69 .. 0.76
   2 ?    6.6   3.3     0.005       6.9      16      40 ..      75     104 ..      64     109 .. 0.73

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0086
  Prok-RING_4 26 dskdlssCPlCqr 38
                 ++++   CP+C++
   CCD26282.1 47 EDSNKDMCPICKT 59
                 4455569****96 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.005
  Prok-RING_4  16 CgHlvCkeCfdskdls...sCPl..Cqrri 40 
                  C H +C++C d   +    +CP   C + +
   CCD26282.1  75 CYHKICESCVDRIFSLgpaQCPYkrCDKIL 104
                  ***********9833335599965566555 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.3      0.11   1.6e+02      36      45 ..      50      59 ..      44      63 .. 0.78
   2 ?    6.1   9.2    0.0068       9.4       1      41 [.      54      96 ..      54     101 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.11
   zf-RING_4 36 eegrCPaCre 45
                ++ +CP C++
  CCD26282.1 50 NKDMCPICKT 59
                5789****97 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0068
   zf-RING_4  1 cplCdeel.detdkdlkpC.eCgyqiClfCyhrileeeegrCP 41
                cp+C ++     d ++    eC ++iC  C +ri +   ++CP
  CCD26282.1 54 CPICKTDRyLSPDVKFLVNpECYHKICESCVDRIFSLGPAQCP 96
                888887765445555554439*********************9 PP

>> DUF1635  Protein of unknown function (DUF1635)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   9.4    0.0024       3.2       2      98 ..     176     271 ..     175     315 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0024
     DUF1635   2 sieelrqsLlyttleLettklkaqeelrkrdeeviqLkdlLkktikErdeAqeklqkl.lleklllqqqqqqneesaslsgassiederrasnnsfss 98 
                 + eel ++L+ + +e ++ + +  ee  k ++e+   k +L++ i+E d+ ++ + k  ++++l         + s++ s+++si d+ ++  +s+ s
  CCD26282.1 176 DYEELNKQLILSNIERNKKEFENFEEREKFQKEMRLKKRMLERQIEEEDKSNKEWAKReIINRL-A-AASTSGSLSSASSASTSIVDNTQDVIESVKS 271
                 689********************************99************998887665155554.3.3333444555556667777775553332222 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   2.8       2.2     3e+03     140     184 ..     164     207 ..     141     229 .. 0.45
   2 ?    9.9   2.6   0.00052      0.72     103     203 ..     217     319 ..     206     327 .. 0.59

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 2.2
       DUF87 140 depveklleelkkekeelrklknqaiarlldkledllrkggsfsn 184
                    ve+ + +lk+ +e +++l  + i+r ++ +e++ +++++  +
  CCD26282.1 164 GIDVEETERQLKDYEELNKQLILSNIERNKKEFENFEEREKFQ-K 207
                 3344444555553333334444444444444444444444444.2 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00052
       DUF87 103 ldllee.ddkpaaavqrsvleealdqakakeekeklssdepveklleelk....................kekeelrklknqaiarlldkledllrkgg 180
                 ++ +ee d+ +++ ++r++++++ +  ++                                         +++++  klk+++++r+ld l+++l+++ 
  CCD26282.1 217 ERQIEEeDKSNKEWAKREIINRLAAASTS--------------------GslssassastsivdntqdviESVKSTVKLKKSSARRKLDELNRFLQDNP 295
                 44444433333333355555555555555....................0333333333333333334435888************************9 PP

       DUF87 181 sf.snsstdliallleklekegki 203
                  f s+ ++++ ++ll + +++g++
  CCD26282.1 296 YFsSSNPNSTQNTLLYQQQHGGSV 319
                 995555555555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2168  (0.120921); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.58u 0.30s 00:00:00.87 Elapsed: 00:00:00.44
# Mc/sec: 2650.99
//
Query:       CCD26283.1  [L=95]
Description: hypothetical protein NDAI_0H01090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.076   12.9   0.4      0.095   12.6   0.4    1.2  1  TMEM52    Transmembrane 52


Domain annotation for each model (and alignments):
>> TMEM52  Transmembrane 52
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   5.3e-06     0.095     111     143 ..      10      42 ..       2      50 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 5.3e-06
      TMEM52 111 ssldtlelpPsYeEalkmartreevarssqkap 143
                 s+ + +  pPsYeE+++m   ++++ + +++++
  CCD26283.1  10 SGYQMPMDPPSYEETMEMDYKKKTNNNNNNRQN 42 
                 45556667**********987777766666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 702.11
//
Query:       CCD26284.1  [L=184]
Description: hypothetical protein NDAI_0H01100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-27   95.1   0.9    6.3e-27   94.7   0.9    1.1  1  MRP-L28        Mitochondrial ribosomal protein L28
  ------ inclusion threshold ------
      0.058   12.6   0.2      0.078   12.2   0.2    1.1  1  tRNA-synt_His  Histidyl-tRNA synthetase


Domain annotation for each model (and alignments):
>> MRP-L28  Mitochondrial ribosomal protein L28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.9   7.1e-31   6.3e-27      20     143 ..      40     167 ..      30     175 .. 0.87

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 7.1e-31
                 XXXXXXXXXXXXXXXXXXXX.XXXXXXXSXSXXTTSSTTX..XSXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T CS
     MRP-L28  20 reerakkrlekqirkleksa.kelkPveelivplksvdsakrrqrkllelskeelerrallekqwaryrqqekekdeqlirqqleaqeealeeLkkvse 117
                 ++ +   +++  ++k+ +++ + l+P  ++ v++ sv sa ++ ++ll+ls+e+l++++++ek+w +y++++  ++   +++q+e++++al++L+++++
  CCD26284.1  40 NKRTTSAASSSSLKKMGRNSaESLSPPLQRAVTQLSVLSARKKMPRLLKLSNEDLIKHQTIEKAWMLYKKDKAIERSMRLQRQYESIQDALDTLESINP 138
                 44445567788999999876267**************************************************************************** PP

                 TTCTTCS-XX...TTSTTXXXXXXBSSXX CS
     MRP-L28 118 eLYeaAvkrd...egllPlelkgptetPP 143
                 +LY+ A   +   +g++Ple + pt++PP
  CCD26284.1 139 HLYKLATSTNgegNGRFPLEFRLPTDAPP 167
                 ****99876422145************** PP

>> tRNA-synt_His  Histidyl-tRNA synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   8.7e-06     0.078     173     245 ..      73     143 ..      60     149 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 8.7e-06
                    HHHHHHHCT-HHHHHHHHHCCTTHHHCCHCC....HCCHCCCHHHHCHCCHCTHHHHHHHHHHHHHHHHHHHHH CS
  tRNA-synt_His 173 allaalarkdlaelkelaaeaglkealrellkal.elygdaevleealealaaapalqaaldeleelaalleal 245
                    +l  + ark++++l +l +e  +k++   +++++  ly++++++e+ ++   + +++q+ald+le++  +l +l
     CCD26284.1  73 QLSVLSARKKMPRLLKLSNEDLIKHQ---TIEKAwMLYKKDKAIERSMRLQRQYESIQDALDTLESINPHLYKL 143
                    56667789999999999999777655...55555589***********99999999*********998887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       843  (0.0470188); expected 358.6 (0.02)
Passed bias filter:                      467  (0.0260472); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1290.95
//
Query:       CCD26285.1  [L=454]
Description: hypothetical protein NDAI_0H01110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0076   17.0  17.3       0.02   15.7   3.0    3.9  3  zf-C2H2_4     C2H2-type zinc finger
  ------ inclusion threshold ------
      0.017   15.5   5.0      0.017   15.5   5.0    3.4  3  zf-C2H2       Zinc finger, C2H2 type
      0.025   15.0   0.6      0.025   15.0   0.6    3.5  3  zf-H2C2_2     Zinc-finger double domain
       0.46   11.2  11.6       0.18   12.5   1.0    3.0  3  zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
        2.6    7.8   5.6         29    4.5   0.1    2.7  2  Rubredoxin_2  Rubredoxin metal binding domain


Domain annotation for each model (and alignments):
>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   3.0   5.5e-06      0.02       1      23 [.     100     122 ..     100     123 .. 0.92
   2 ?    4.7   0.8     0.018        66       7      24 .]     146     163 ..     140     163 .. 0.87
   3 ?    4.8   0.6     0.017        63       3      21 ..     182     201 ..     181     202 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.5e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 + C++C++ F+ k  L rHlk+h
  CCD26285.1 100 YVCHHCNAQFRIKGYLTRHLKKH 122
                 89********888889******9 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.018
   zf-C2H2_4   7 gksFsskkaLlrHlkthH 24 
                 ++ Fs+++++++Hlk+ H
  CCD26285.1 146 SGGFSRRDTYKTHLKSRH 163
                 678************998 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.017
   zf-C2H2_4   3 CpiCgksFsskkaL.lrHlk 21 
                 C +Cg  F s++++  +H++
  CCD26285.1 182 CAQCGDFFDSCENWvETHIE 201
                 99*******99996377986 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.5   5.0   4.8e-06     0.017       1      23 []     100     122 ..     100     122 .. 0.99
   2 ?    4.1   0.9     0.021        76      10      23 .]     149     163 ..     142     163 .. 0.93
   3 ?   -3.0   0.8       3.7   1.3e+04       3      15 ..     182     194 ..     181     196 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 4.8e-06
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y+C++C+  F+ k  L+rH+++H
  CCD26285.1 100 YVCHHCNAQFRIKGYLTRHLKKH 122
                 9*********************9 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.021
                 ESSHHHHHHHHHC.C CS
     zf-C2H2  10 FkrksnLkrHirt.H 23 
                 F+r++ +k+H+++ H
  CCD26285.1 149 FSRRDTYKTHLKSrH 163
                 9***********999 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 3.7
                 ETTTTEEESSHHH CS
     zf-C2H2   3 CpdCgksFkrksn 15 
                 C  Cg  F + +n
  CCD26285.1 182 CAQCGDFFDSCEN 194
                 8999977776655 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.21   7.4e+02      14      24 ..      99     109 ..      86     110 .. 0.79
   2 ?   15.0   0.6   6.9e-06     0.025       2      19 ..     115     132 ..     114     132 .. 0.95
   3 ?    1.2   0.3      0.16   5.7e+02       5      25 ..     158     190 ..     155     191 .. 0.60

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.21
   zf-H2C2_2  14 pyeCplCdkaF 24 
                  y C  C+  F
  CCD26285.1  99 QYVCHHCNAQF 109
                 499****9877 PP

  == domain 2  score: 15.0 bits;  conditional E-value: 6.9e-06
   zf-H2C2_2   2 LrrHirkHtgekpyeCpl 19 
                 L+rH++kH  ek y+Cp+
  CCD26285.1 115 LTRHLKKHATEKAYTCPF 132
                 99***************7 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.16
   zf-H2C2_2   5 Hirk.Ht....gekpy.......eCplCdkaFk 25 
                 H+++ H     g +p        +C  C++ F 
  CCD26285.1 158 HLKSrHIlfpkGVRPQdrnksvgHCAQCGDFFD 190
                 555434454444444455666678999*99996 PP

>> zf-C2H2_3rep  Zinc finger C2H2-type, 3 repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.0   4.9e-05      0.18      72     121 ..      70     119 ..      30     124 .. 0.67
   2 ?    5.3   0.5    0.0082        29      32      96 ..     179     248 ..     143     263 .. 0.58
   3 ?   -2.7   0.1       2.6   9.2e+03      67      84 ..     309     321 ..     288     338 .. 0.45

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.9e-05
  zf-C2H2_3rep  72 sasedssqklelsksasvennsenesgvrkfvcrfcGlkfdllpdlGrhh 121
                   + ++++s+ ++ ++++  ++n+++ s ++++vc+ c  +f +   l rh 
    CCD26285.1  70 TINNSTSAVTSINNMTRNTTNNKRGSQIHQYVCHHCNAQFRIKGYLTRHL 119
                   2222233334444444455777888999******************9996 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0082
  zf-C2H2_3rep  32 llqcipcgshfgnaeelw.lhvls....vhpsdfklskvaqkknlsasedssqklelsksasvennsene 96 
                   +  c  cg  f + e+   +h+ s    + ps++++ k++++ +++++++ ++ + +++ +  +++++n+
    CCD26285.1 179 VGHCAQCGDFFDSCENWVeTHIESgkckALPSNYRNGKIQDNATTTNNNSITAANTAASDTNTDTSKQNA 248
                   44799******99987542688662222557888888888866666555544444444444444444443 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.6
  zf-C2H2_3rep  67 qkknlsasedssqklels 84 
                   q+++ s     +q++e +
    CCD26285.1 309 QEPEDS-----EQESESE 321
                   222222.....2222111 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   1.6    0.0095        34       1      10 [.     100     109 ..     100     110 .. 0.90
   2 ?    4.5   0.1     0.008        29      13      22 ..     178     187 ..     174     188 .. 0.80

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.0095
  Rubredoxin_2   1 YvCsqCGfes 10 
                   YvC++C++++
    CCD26285.1 100 YVCHHCNAQF 109
                   9******986 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.008
  Rubredoxin_2  13 wfGrCpsCgs 22 
                    +G+C +Cg+
    CCD26285.1 178 SVGHCAQCGD 187
                   5799****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1512  (0.0843326); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.28s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 3095.36
//
Query:       CCD26286.1  [L=937]
Description: hypothetical protein NDAI_0H01120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-37  127.7   3.2    3.3e-37  126.6   0.8    3.0  3  CDC24     CDC24 Calponin
    2.8e-26   92.9   7.5    2.8e-26   92.9   7.5    3.7  4  RhoGEF    RhoGEF domain
    3.1e-23   82.4  10.8    1.9e-13   50.7   2.9    3.8  4  PH_10     Pleckstrin homology domain
     0.0063   16.1   9.6     0.0063   16.1   9.6    5.1  5  SR-25     Nuclear RNA-splicing-associated protein
  ------ inclusion threshold ------
      0.046   14.2   2.9       0.56   10.7   2.9    3.0  1  PH        PH domain


Domain annotation for each model (and alignments):
>> CDC24  CDC24 Calponin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.3   4.6e+03      34      72 ..     143     181 ..     129     194 .. 0.71
   2 !  126.6   0.8   9.3e-41   3.3e-37       1      89 []     222     308 ..     222     308 .. 0.99
   3 ?   -2.4   0.0       1.6   5.8e+03      32      55 ..     673     696 ..     657     701 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.3
       CDC24  34 vksddlkvcKksvydFllackkeLgfedeelftisdlfs 72 
                 ++s+d k+  +++++  +   ++Lg +d++ f +  ++ 
  CCD26286.1 143 RDSHDGKTISNATFRSSSISANSLGGKDNDTFSLDGITH 181
                 567778888888888888899999999999998655543 PP

  == domain 2  score: 126.6 bits;  conditional E-value: 9.3e-41
       CDC24   1 dPvtqlwkllrqGspLlalfNalkpeeklevdevksddlkvcKksvydFllackkeLgfedeelftisdlfsedttdlvkvlkvvnkvl 89 
                 dPvtql++l++qGspL+++fNa+kp+ kl+v  v+sddlk+cKks+ydF+l+ckk+++f+deelftisd+fs++t++++kv++vv+++l
  CCD26286.1 222 DPVTQLSQLFQQGSPLCIIFNAVKPQFKLPV--VSSDDLKICKKSIYDFILGCKKHFAFNDEELFTISDVFSNSTNHFIKVIDVVQTLL 308
                 9******************************..*****************************************************987 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.6
       CDC24  32 devksddlkvcKksvydFllackk 55 
                 ++++s++l ++++  ydF +++++
  CCD26286.1 673 NNNNSSKLSKSRHNSYDFTTSLMN 696
                 457778888888899999887765 PP

>> RhoGEF  RhoGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   7.5   7.7e-30   2.8e-26       1     163 [.     345     494 ..     345     510 .. 0.85
   2 ?   -1.7   0.0      0.85     3e+03     160     182 .]     522     544 ..     517     544 .. 0.82
   3 ?   -1.5   0.2      0.71   2.6e+03      90     127 ..     609     646 ..     562     658 .. 0.70
   4 ?   -1.6   0.7      0.78   2.8e+03     111     111 ..     791     791 ..     712     896 .. 0.51

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 7.7e-30
                 HHHHHHHHHHHHHHHHHHHHHHTHCCCHHCTCCHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH.HHHTTSS-S-SHHHHHHHHSTHHHHHHHHHCHHH CS
      RhoGEF   1 vikElleTErsYvrdLkvlvevylkplselevlseeeikiiFsnieeilelhrsflleeLeerlkeseeqkeaqsigdvflkfadkfkkYseYcsnypn 99 
                 +ikE++ TEr+Y++dL++l   y + l +++++++ee+ ++F n+ e ++++r+fl++ Le +      + ++q+ig +f++  + fk Y+ +   +++
  CCD26286.1 345 IIKEFVITERKYIHDLEILD-EYKQQLLDSNLITSEELYMLFPNLTEAIDFQRRFLIS-LEINS---LVDPSKQRIGALFMHSKHFFKLYEPWSIGQNA 438
                 79*****************6.5665666789*********************666644.65555...788999************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHHTSGGGTT--HHHHTTHHHHHHHHHHHHHHHHHHTS-TTSHH CS
      RhoGEF 100 alkllkelskknkkfkafleeaeerpecskldLeslLikPvqRlprYpLLLkellkntpeshpd 163
                 a++ l++ ++k +++ +f+ +       +kl+L+s+L kPvqRl++YpLLLkell   +++ ++
  CCD26286.1 439 AIDFLSNTLDKFQNM-NFVLK-------NKLELQSFLYKPVQRLCKYPLLLKELLSAYNKQLQK 494
                 *******76555555.44444.......89************************9988776544 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.85
                 TSHHHHHHHHHHHHHHHHHHHHH CS
      RhoGEF 160 shpdyealkkaleaikevaseiN 182
                 s++  ++l+ al+  k++a++iN
  CCD26286.1 522 SSSAVKELEIALDISKKIAKSIN 544
                 3456699**************99 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.71
                 HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGG CS
      RhoGEF  90 YseYcsnypnalkllkelskknkkfkafleeaeerpec 127
                 +se  +n +na+  ++++s+++k  + +l++ ++ +  
  CCD26286.1 609 FSEVNNNNTNAQNSITSSSSTKKSSSLILKKKNSTSSS 646
                 55566788889999999888888888888876555444 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 0.78
                 H CS
      RhoGEF 111 n 111
                 +
  CCD26286.1 791 S 791
                 0 PP

>> PH_10  Pleckstrin homology domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.9         1   3.6e+03      44      57 ..     500     513 ..     476     558 .. 0.54
   2 !   45.5   1.1   2.2e-15     8e-12       2      75 ..     573     642 ..     572     680 .. 0.62
   3 !   50.7   2.9   5.3e-17   1.9e-13      47     123 .]     704     777 ..     665     777 .. 0.81
   4 ?   -3.7   1.3       3.9   1.4e+04      56      74 ..     822     840 ..     811     880 .. 0.49

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1
       PH_10  44 kkksksssllkkks 57 
                  ++s+s+s+++ +s
  CCD26286.1 500 TNSSSSTSVSTSSS 513
                 22222222222222 PP

  == domain 2  score: 45.5 bits;  conditional E-value: 2.2e-15
       PH_10   2 kfGeLllhdtltVkkd..sdsereyevyLFekillcvkevkeekkkksksssllkkkssssskkkktklqLKGril 75 
                 kfGeLl++d++ ++++  +++er + vyLFeki+++++ev++++ + ++s ++++ +      kk+++l LK +  
  CCD26286.1 573 KFGELLYFDKVFISTNnsNEQERGFDVYLFEKIIILFSEVNNNNTNAQNSITSSSST------KKSSSLILKKKNS 642
                 8**************977777888***************998733333333322222......3333333332222 PP

  == domain 3  score: 50.7 bits;  conditional E-value: 5.3e-17
       PH_10  47 sksssllkkksssss.......kkkktklqLKGrilisnvtevtssskpgsyslqiswkgdkelesftlrfkneeqlkkWesal 123
                 +++++ +       +       + +++kl+L+Gri+i n++e++   +++s sl+i+w++ ke+++f l+fknee++++W+s+l
  CCD26286.1 704 NSNNNNN-------KnfshsnfALNEPKLDLRGRIMIMNLNEIK---PSKSRSLNITWESIKEQGNFLLKFKNEETRDNWCSCL 777
                 2223333.......1333444599*******************9...5899******************************997 PP

  == domain 4  score: -3.7 bits;  conditional E-value: 3.9
       PH_10  56 kssssskkkktklqLKGri 74 
                 ++++++++++++ + + +i
  CCD26286.1 822 NNTTNNNNNTSRRNTRNSI 840
                 3333332222222222222 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8   4.3         5   1.8e+04      17      31 ..      23      37 ..       6      66 .. 0.40
   2 ?   -4.8   8.2       4.6   1.6e+04       9      76 ..     101     165 ..      93     187 .. 0.51
   3 !   16.1   9.6   1.8e-06    0.0063      55     103 ..     492     550 ..     480     566 .. 0.41
   4 ?   -2.9  19.5       1.2   4.3e+03      41     102 ..     621     685 ..     609     727 .. 0.45
   5 ?   -0.2  17.0      0.18   6.4e+02      20     100 ..     795     880 ..     777     896 .. 0.50

  Alignments for each domain:
  == domain 1  score: -5.8 bits;  conditional E-value: 5
       SR-25 17 ekkrkksskdssrss 31
                ++ r+ s +++s++ 
  CCD26286.1 23 NRLRNISTSSNSNNN 37
                222222222221221 PP

  == domain 2  score: -4.8 bits;  conditional E-value: 4.6
       SR-25   9 rsreergeekkrkksskdssrsssasksqsrkassasekeeerskekkkkkrrrssssssssssssss 76 
                 + ++ + ++k++ +s +dss  +   ++++ ++s +s ++ +r+++  k     s+++  sss+s++s
  CCD26286.1 101 ERQSLQLSQKQQLYSTHDSSVIANVINKENAHRSVSSMASYNRDSHDGKTI---SNATFRSSSISANS 165
                 444456677777777777744333333322222222222223333333332...23344444444433 PP

  == domain 3  score: 16.1 bits;  conditional E-value: 1.8e-06
       SR-25  55 kkkkkrrrssssssssssssssssssssssssdd..........rkkrgkkkdkkkkkk 103
                  +k ++++++ssss+s s+ssssssss  sss+            kk +k+ +  +++ 
  CCD26286.1 492 LQKTNNNNTNSSSSTSVSTSSSSSSSSPTSSSSAvkeleialdiSKKIAKSINENQRRT 550
                 22223333333333333333333333333333222234666655444444333333332 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.2
       SR-25  41 assasekeeerskekkkkkrrrssssssssssssssssssssssssdd...rkkrgkkkdkkkkk 102
                 +s +s++++++s++   kk++++sssss+s   ss  s+ss    +++   +++++ +k  k+++
  CCD26286.1 621 NSITSSSSTKKSSSLILKKKNSTSSSSSTSILNSSLPSASSLALNNSTsanNNNNNSSKLSKSRH 685
                 23333333333333333333333333333322222222222222222211233333333333333 PP

  == domain 5  score: -0.2 bits;  conditional E-value: 0.18
       SR-25  20 rkksskdssrsssasksqsrkassasekeeerskekkkkkrrrsssssssss....sssssssssssssssdd.rkkrgkkkdkkk 100
                    ss++   +   s+s++r++s + +++++++++++ ++++r+s ss +ss    +s + +ss s  s s + r   +  ++kk+
  CCD26286.1 795 GDFSSSSIIGTPLPSPSTHRNNSITHNNNTTNNNNNTSRRNTRNSISSINSShlkyISENTTSSNSMVSPSANaRCSSSSMHQKKR 880
                 44566666667778999999998888877755555555554444444444441222222222222222222221323333333332 PP

>> PH  PH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   2.9   0.00016      0.56      78     104 ..     755     781 ..     554     782 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00016
                 SSTEEEEEEESSHHHHHHHHHHHHHHH CS
          PH  78 ngsrtyllqasseeerkeWikaiqsai 104
                 +++ ++ll++++ee r +W++++qs++
  CCD26286.1 755 KEQGNFLLKFKNEETRDNWCSCLQSLV 781
                 22589*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2067  (0.115288); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.99u 0.30s 00:00:01.29 Elapsed: 00:00:00.48
# Mc/sec: 5916.27
//
Query:       CCD26287.1  [L=636]
Description: hypothetical protein NDAI_0H01130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-25   89.4   2.8    3.3e-25   88.3   2.8    1.6  1  Cyclin_N  Cyclin, N-terminal domain


Domain annotation for each model (and alignments):
>> Cyclin_N  Cyclin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   2.8   1.8e-29   3.3e-25      14     127 .]     116     231 ..     103     231 .. 0.91

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 1.8e-29
                 S-STTCTTCTSSS-HHHHHHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHSSS..---HHHHHHHTTTSS-HHH CS
    Cyclin_N  14 lpkpdyldqqpelnpemRailidwlvevaekfkltpetlflavnyldRflskksvpkdklqlvgatcLllAaKveeis..ppkledlvyitdeafteee 110
                 + +   +++qp++n++mR  + d+++  +++++l+++tlfla ++ldR+ sk +++ ++ ql+++t+L++++K+ +++  + +l+ l+ ++ + ++ ++
  CCD26287.1 116 KINILNFQTQPQINSKMRFLIFDFIFYSHTRLNLSASTLFLAFDILDRYASKYIIKSCDYQLLALTALWISSKFWDAKnrCATLKVLQSLCCNQYSVTQ 214
                 444455699*****************************************************************5554449****************** PP

                 HHHHHHHHHHHTTT--- CS
    Cyclin_N 111 ilemErliLetLnfdls 127
                 +++mE ++L++Ln++l+
  CCD26287.1 215 FKKMEFHLLKALNWSLC 231
                 **************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1620  (0.0903564); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 4093.35
//
Query:       CCD26288.1  [L=294]
Description: hypothetical protein NDAI_0H01140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.7e-97  324.4   8.4    1.8e-96  323.2   8.4    1.5  1  Cyto_heme_lyase  Cytochrome c/c1 heme lyase


Domain annotation for each model (and alignments):
>> Cyto_heme_lyase  Cytochrome c/c1 heme lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.2   8.4  9.9e-101   1.8e-96       1     290 [.       1     277 [.       1     279 [. 0.91

  Alignments for each domain:
  == domain 1  score: 323.2 bits;  conditional E-value: 9.9e-101
  Cyto_heme_lyase   1 mgwfwadsaksaasasksasskasspseCPmhkkkkskkkkaaseaaakekkkesasacpvkeeeeseeeeeksalsklnplnympselsqera 94 
                      mgwfwad +++++++  +ass+++ + +CP+++++k+  ++ ++   ++e+k+e+ sacpv     +    +++++s+lnpln++p +ls+er+
       CCD26288.1   1 MGWFWADPNTQQNKSLWKASSATAISGQCPVMHERKE--ESISACPVMRERKEEPVSACPV-----M----REKKQSDLNPLNNIPFNLSSERH 83 
                      9*******8888888888899999999***8854444..445556778888999999****.....2....2334589**************** PP

  Cyto_heme_lyase  95 peqkvdLpteReissiPkg.deeglWeYPspqqmynAmlrKGy......edipedavesmvavHnflnEgaWeeileWEkkfakglakgwkkck 181
                      ++q+++LpteR is+iP+g +++++WeYPspqqmynAm++KG+      e+ipedavesmv vHn+lnEg+W eil+WE+ ++k          
       CCD26288.1  84 DQQAIELPTERMISTIPRGtKKKEYWEYPSPQQMYNAMIKKGKidsntgEEIPEDAVESMVYVHNLLNEGSWGEILKWEQPHTK---------- 167
                      *******************77788************************************************************.......... PP

  Cyto_heme_lyase 182 rgeekveeelekeeePkLlrFqGrpkelsPkarllqllgklfPskfstelPFDRHDWlvlRk...........teeeekkevrYviDyYsgpde 264
                        e+ +        ePkLl+F+Grp++lsP+ar++++l+++fPs +s+elPFDRHDW+vlR            +e +++k++rYv+D+Y++pd+
       CCD26288.1 168 --ETLI--------EPKLLKFTGRPDKLSPRARWHHFLSNIFPSYYSNELPFDRHDWFVLRGdpnstylddegNEISGYKRIRYVLDFYGAPDD 251
                      ..7777........9***********************************************9999999887544488**************** PP

  Cyto_heme_lyase 265 etGepvfllDvRPaldsltaaadRlv 290
                      e+G p+f++DvRPald+++++ dR++
       CCD26288.1 252 ENGLPTFNIDVRPALDNFENTRDRFN 277
                      ************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       388  (0.0216409); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 1992.58
//
Query:       CCD26289.1  [L=501]
Description: hypothetical protein NDAI_0H01150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.4e-168  559.4   2.0   3.1e-168  559.1   2.0    1.1  1  PK               Pyruvate kinase, barrel domain
      2e-33  115.1   0.0    6.9e-33  113.4   0.0    2.0  2  PK_C             Pyruvate kinase, alpha/beta domain
    3.7e-05   23.0   0.5      8e-05   21.9   0.1    1.7  2  HpcH_HpaI        HpcH/HpaI aldolase/citrate lyase family
  ------ inclusion threshold ------
      0.031   14.3   0.0      0.072   13.1   0.0    1.6  1  Mtd_N            Major tropism determinant N-terminal domain
       0.22   11.0   0.0       0.44   10.0   0.0    1.5  1  Sulfotransfer_1  Sulfotransferase domain


Domain annotation for each model (and alignments):
>> PK  Pyruvate kinase, barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  559.1   2.0  8.5e-172  3.1e-168       2     346 ..      20     364 ..      19     366 .. 0.99

  Alignments for each domain:
  == domain 1  score: 559.1 bits;  conditional E-value: 8.5e-172
                 --SEEEEEESCCCTSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHTTTTS.-EEEEE---S-EBB--BTTCSSSEEE-TTSEEEEE-SCT CS
          PK   2 rrtkivctlGPasesvekleklieaGlnvvrlnfshGsheehqerienvreaekklgkk.vaillDtkGpeirtgllkdgkkdielkegdklkvsldek 99 
                 rrt+i++t+GP++++ e+l +l++aGln+vr+nfshGs+e+hq++i+n+r++e+ ++++ +ai+lDtkGpeirtg++++ + d+ +  ++++++++d+k
  CCD26289.1  20 RRTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHQSVIDNARKSEELYPGRpLAIALDTKGPEIRTGTTTN-EVDYPIPPNHEMIFTTDDK 117
                 9*******************************************************9999*******************.99***************** PP

                 CTTTBBTTEEEBS-TTHHHHS-TTEEEEETTTTEEEEEEEEETTEEEEEEESS-EEE-SS-BEE-TTS---S-SS-HHHHHHHHHHHHCT-SEEEETTE CS
          PK 100 lkeegdeelialdyknivkdvevGktilvdDGllslkvlevdeekeleveventgvlgskkgvnlpgtkvdlpalsekDkadlrfgvkqgvdliaasfv 198
                 +++++d++++++dykni+k++++Gk+i+vdDG+ls++vlev ++k+l+v+  n+g+++s+kgvnlpgt+vdlpalsekDkadlrfgvk+gv++++asf+
  CCD26289.1 118 YAKACDDKIMYVDYKNITKVISAGKIIYVDDGVLSFEVLEVVDDKTLKVKSMNAGKICSHKGVNLPGTDVDLPALSEKDKADLRFGVKNGVHMVFASFI 216
                 *************************************************************************************************** PP

                 -SHHHHHHHHHHHTCCCTTSEEEEEE-SCHHHHTHHHHHHHSSEEEEEHHHHHHHSTCCCHHHHHHHHHHHHHHHT--EEEESSTTGGGGTSSS--HHH CS
          PK 199 rkasDvkevrevleeegkeikiiakienqegvenldeileasDgimvarGDlGieipaekvllvqkklikkcnlagkpvitatqmlesmiknPrptrae 297
                 r+a+Dv ++revl+e+g +iki+ kienq+gv+n+deil+++D++mvarGDlGieipa++vl+vqkkli+k+nlagkpvi+atqmlesm++nPrptrae
  CCD26289.1 217 RTAQDVLTIREVLGEDGADIKIVVKIENQQGVNNFDEILKVTDAVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAE 315
                 *************************************************************************************************** PP

                 HHHHHHHHHHT-SEEEESHHHHTSS-HHHHHHHHHHHHHHHHHTS-HHH CS
          PK 298 vsDvanavlDGtDavmLsgetakGkyPveavkamaevaleaekalkelk 346
                 vsDv+na+lDG+D+vmLsgetakG+yP++av++ma++al ae+a+++++
  CCD26289.1 316 VSDVGNAILDGADCVMLSGETAKGNYPINAVTTMADTALIAEQAVAYQS 364
                 ********************************************99876 PP

>> PK_C  Pyruvate kinase, alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.4   1.2e+04      39      50 ..     341     352 ..     333     368 .. 0.63
   2 !  113.4   0.0   1.9e-36   6.9e-33       1     116 [.     381     498 ..     381     499 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 3.4
                 SEEEEEESHHHH CS
        PK_C  39 vpiiavtpnelt 50 
                  pi avt+  +t
  CCD26289.1 341 YPINAVTTMADT 352
                 566677765555 PP

  == domain 2  score: 113.4 bits;  conditional E-value: 1.9e-36
                 HHHHHHHHHHHHHHT-SEEEEE-SSSHHHHHHHHT-TSSEEEEEESHHHHHHHHHHCTTEEHHH.HHHHH......TTSHHHHHHHHHHHTTSS-STSE CS
        PK_C   1 eaiakaaveaaeelgakaIvvltesGetArliskyrpkvpiiavtpneltarqlalyrGvypvlvekakt...aestdellreavkvakeaglvkkgde 96 
                 e++a +av+a +e++akaI+vl++sG t+rl+skyrp++pii vt+n+++ar ++l+rGv+p+ +ek++    +e+++ +l+ +++ a+e g++kkgd+
  CCD26289.1 381 ETVAASAVAAVYEQKAKAIIVLSTSGLTPRLVSKYRPDCPIILVTRNPRAARFSHLSRGVFPFVYEKDSVadwTEDVELRLKYGIEKAIEMGILKKGDT 479
                 79**************************************************************99876677777888899999*************** PP

                 EEEEE-SSSS..SS--EEEE CS
        PK_C  97 vvvtaGtpkgesgttNtlrV 116
                  v ++G + g +g++Ntl+V
  CCD26289.1 480 YVSIQGFKAG-EGHSNTLQV 498
                 **********.*******98 PP

>> HpcH_HpaI  HpcH/HpaI aldolase/citrate lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   2.2e-08     8e-05      75     158 ..     197     272 ..     168     299 .. 0.86
   2 ?   -2.4   0.0      0.59   2.1e+03      16      32 ..     321     337 ..     314     354 .. 0.84

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.2e-08
                 HHHGG.HHHTTSSEEEESS--SHHHHHHHHHHTSHTTTS---HCCC-EEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHT CS
   HpcH_HpaI  75 kqdle.vldlgaqvvlvPkvetaeealevvsalrepekgirganketrllaqiEsaegvknaeeIaavegldgvflGaeDlsadl 158
                 k dl+  ++ g+  v   ++ ta+++l++ ++l e         + +++++ iE ++gv+n +eI++v   d+v+++  Dl  ++
  CCD26289.1 197 KADLRfGVKNGVHMVFASFIRTAQDVLTIREVLGEDG-------ADIKIVVKIENQQGVNNFDEILKVT--DAVMVARGDLGIEI 272
                 567888899************************9999.......8999*****************9885..67777777776655 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.59
                 HHCTC--SEEEEESSTS CS
   HpcH_HpaI  16 kaaiagaDsvliDlEda 32 
                 +a + gaD v++ +E a
  CCD26289.1 321 NAILDGADCVMLSGETA 337
                 66778999999999977 PP

>> Mtd_N  Major tropism determinant N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0     2e-05     0.072       3      34 ..      91     123 ..      91     123 .. 0.97

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2e-05
                 --EE-HHHH.HT----TTEEEEETTTTEEEEEE CS
       Mtd_N   3 lRRGtaanl.anpvLaaGElgfdTDtkelkvGD 34 
                 +R Gt++n   +p++ + E+ f+TD k+ k +D
  CCD26289.1  91 IRTGTTTNEvDYPIPPNHEMIFTTDDKYAKACD 123
                 79*******9********************998 PP

>> Sulfotransfer_1  Sulfotransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00012      0.44      54     121 ..     372     435 ..     300     466 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00012
                      TSG.CCGTTECCCHHHTTTEEHHHHHHHSTSS.EEE...E...GGGS.CHHHHTT-EEEEEE--HHHHHHHH CS
  Sulfotransfer_1  54 yfp.nslkppdhlrsyshvaekvvrlralesprllk...tHlplkllpkslldsnlKiiylvRnpkdvavSr 121
                      ++p ++        +    a+ v+++++++ + +++   + l   l+ k   ++++ ii++ Rnp+++  S 
       CCD26289.1 372 LTPkPTS------TTETVAASAVAAVYEQKAKAIIVlstSGLTPRLVSK--YRPDCPIILVTRNPRAARFSH 435
                      3332222......334677888888999999999996544444444444..49*************987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.43
# Mc/sec: 3503.87
//
Query:       CCD26290.1  [L=378]
Description: hypothetical protein NDAI_0H01160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.7e-15   55.0   1.2    1.8e-14   53.4   1.2    2.0  1  HLH              Helix-loop-helix DNA-binding domain
  ------ inclusion threshold ------
      0.014   14.4   0.9      0.014   14.4   0.9    1.6  2  Glyco_transf_90  Glycosyl transferase family 90


Domain annotation for each model (and alignments):
>> HLH  Helix-loop-helix DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   1.2     2e-18   1.8e-14       1      53 []     260     334 ..     260     334 .. 0.96

  Alignments for each domain:
  == domain 1  score: 53.4 bits;  conditional E-value: 2e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHC.ST.....................CSTTSS-STHHHHHHHHHHHHHHHH CS
         HLH   1 rraahnerErrRRdriNsaleeLrel.lP.....................slppskKlsKaeiLekAveYIkhLq 53 
                 +++ahn++E+r+R +iN+++++     +P                     +  ++++l+K++iLekAv+YI +Lq
  CCD26290.1 260 QKQAHNKIEKRYRININTKISQVTNKyIPwlaseqpafevgesvkkeqqlKKLSKTRLNKSMILEKAVDYILYLQ 334
                 699********************9988*******************9999888999******************9 PP

>> Glyco_transf_90  Glycosyl transferase family 90
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.9   1.5e-06     0.014     178     236 ..     231     291 ..     219     304 .. 0.86
   2 ?   -1.9   0.0      0.13   1.2e+03     290     351 ..     308     368 ..     299     374 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.5e-06
  Glyco_transf_90 178 lkcnrskkelvdarltkqdekkeskegvkessledqckhkYkiyieGvaasvsekyi..la 236
                      + c +++k+l++++l + ++ ++++ +  +++  ++++++Y+i+i+     v +kyi  la
       CCD26290.1 231 IVCKVRNKKLMKTELEQANKVQRKRLTLDQKQAHNKIEKRYRININTKISQVTNKYIpwLA 291
                      6799****************************************************94455 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.13
  Glyco_transf_90 290 eiaeegseFireeLkmddvydYmfhLlteYakllkykptvpkgavevcaeslacpaeglerk 351
                      ++ + ++  +++++  ++ +dY +  l++  +l+++++++ ++ v++  + +    + l+r+
       CCD26290.1 308 QLKKLSKTRLNKSMILEKAVDYILY-LQDNQNLFEMEVQRLRNEVQILRNQFQSGERKLSRN 368
                      5555555566777788888899887.577789999999999999998887666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1689  (0.0942049); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 2714.90
//
Query:       CCD26291.1  [L=434]
Description: hypothetical protein NDAI_0H01170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-44  152.4  13.4    1.4e-44  152.4  13.4    1.6  2  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin
  ------ inclusion threshold ------
      0.033   14.3   4.7        0.1   12.7   1.8    2.9  2  G8              G8 domain


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.4  13.4   1.6e-48   1.4e-44       6     321 ..      18     328 ..      11     334 .. 0.87
   2 ?   -2.4   0.9       0.2   1.8e+03     172     195 ..     371     394 ..     348     431 .. 0.49

  Alignments for each domain:
  == domain 1  score: 152.4 bits;  conditional E-value: 1.6e-48
  Hyphal_reg_CWP   6 alalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitstssllalsvtlasatgsieNnGiivfnseesltass 100
                     ++ + l+is++t  +++ +++ gd+t+n g++l i ++a  ++++  ++ nng+l+i +t++  ++s++   +  +i+N+G +++++ +s   +s
      CCD26291.1  18 TSSALLQISSDTLLDEEKTIS-GDITVNAGSSLMINHDAELSIES-GTIANNGNLCIGTTDTVSEMSID--IVARNINNKGNLIIDNGDSGD-TS 107
                     3344456*************9.*********************99.5**********************..788***********8877765.44 PP

  Hyphal_reg_CWP 101 yklvgasFeNnGelylagsgsvvastmeitsnsweNnGlivfyqsqrssgtvklgaalgsitNdGqIclknqayqqttsiqGsGCitvgedssiy 195
                      k++ +s+ N+G l ++ ++   ++++++t +++ N+G+i + + ++ ++ ++++a+ + i+N+G+I ++ +++++++ i+G GCi  +  ++  
      CCD26291.1 108 TKVTIGSLINSGFLRMNLKD--SSESFSVT-KNFINSGYILLGHVSEFDSLLTFEAPKTGIQNNGTIDVSGTNVTINAPITGGGCIYGNSMGTDL 199
                     556669******55555555..69999999.99*****************************************************988766653 PP

  Hyphal_reg_CWP 196 isnsllsissdqtiYLadsssslvvesvskpqt.fkvagFGngnkigl..tlpllgl..vlssisYdsdtgiLtlralllsqkFnIGtGYdsskF 285
                           ++s dqt+++++s +   ++  ++ ++   ++gFG++ +i l  ++p      +l++ sYd  tgi+t+++ + + + +IG+GYd sk+
      CCD26291.1 200 T--IDTDYSLDQTFWMESSGTDSKITLLGSGKNiPIIRGFGKKSMIVLgrNIPT--YngTLTQPSYDPATGIVTISNMYGTFRIDIGKGYDGSKI 290
                     3..23479**********9999999888866665899*******9999445554..44599**************987779************** PP

  Hyphal_reg_CWP 286 eivtdagagllsvqngavtYngpvPs..rslPsaCqaC 321
                     +  ++++ g  s++  +++Yng  P+  +++P++C+a 
      CCD26291.1 291 SAAEQTTCGSGSCYAPSLQYNGVEPAaaTERPAKCAAN 328
                     *************************98889*****965 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.2
  Hyphal_reg_CWP 172 qayqqttsiqGsGCitvgedssiy 195
                     +a+ q+t  +G+   t +++  ++
      CCD26291.1 371 SAVAQHTVSKGTSSTTNDNGQCVV 394
                     333333333333332222222222 PP

>> G8  G8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.8   1.2e-05       0.1      13      80 ..      20      86 ..      13     182 .. 0.86
   2 ?    0.1   0.0     0.087   7.8e+02      77     105 ..     220     245 ..     211     257 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.2e-05
          G8 13 nvvIpagktvlldvsspklrsllve..GtLifsddksdielnaeyilvqggGkleiGteeepfkgkatIt 80
                + +++ +   lld++++    ++v+  ++L +  + +d el++e  ++ ++G+l iGt +   + ++ I+
  CCD26291.1 20 SALLQISSDTLLDEEKTISGDITVNagSSLMI--N-HDAELSIESGTIANNGNLCIGTTDTVSEMSIDIV 86
                55566677889**99999********889999..3.589999999999999*******998777666665 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.087
          G8  77 atItLyGteewsstelpdlgaKvlavsng 105
                  +ItL G +  + + +  +g+K+++v   
  CCD26291.1 220 SKITLLG-SGKNIPIIRGFGKKSMIV--L 245
                 689****.99999999******9998..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      284  (0.0158403); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.42
# Mc/sec: 3074.56
//
Query:       CCD26292.1  [L=317]
Description: hypothetical protein NDAI_0H01180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-40  136.8   1.4    4.6e-40  136.8   1.4    1.8  2  Mis12          Mis12 protein
  ------ inclusion threshold ------
       0.22   11.9   2.9       0.23   11.8   0.1    2.2  2  A_deaminase_N  Adenosine/AMP deaminase N-terminal


Domain annotation for each model (and alignments):
>> Mis12  Mis12 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.8   1.4   5.1e-44   4.6e-40       1     134 [.      11     147 ..      11     148 .. 0.91
   2 ?   -2.2   0.1      0.43   3.8e+03      89      89 ..     219     219 ..     178     275 .. 0.58

  Alignments for each domain:
  == domain 1  score: 136.8 bits;  conditional E-value: 5.1e-44
                 HHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH........TTSTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---HHHHC... CS
       Mis12   1 lltehlgftPqsliddiinavndllyravdavekvLdkkleedeeeekaaeesteeieeGtakletlleasvDknfdkfElyvlrniltipeelve... 96 
                 +lt +l+++P+sl+ddiinavn+++yr+++a+ek+L       +++  + +++teei+ G+akletlle+svDknfdk+Ely+lrn+l+ip++l +   
  CCD26292.1  11 ILTSFLQYPPVSLVDDIINAVNEIMYRCTAAMEKYLI------RKSIVQGKDYTEEIKIGMAKLETLLEYSVDKNFDKLELYILRNVLRIPQDLLDtkk 103
                 69**********************************4......444566779******************************************99999 PP

                 .CCHCCHHCCTTS.....HHH.HHHHHHHHHHHHHHHHHHHHHHH CS
       Mis12  97 .wvrLphdeglel.....eer.ldeeieelrrkleaelklnkaLk 134
                  ++rLp ++gl +     + r  + e ++   k+e+e   n +Lk
  CCD26292.1 104 dVFRLPYQRGLVIvnereQ-RkNELEFQDTVLKIEEEFSKNIKLK 147
                 9************987643.2588999999999999999998886 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.43
                 - CS
       Mis12  89 t 89 
                 +
  CCD26292.1 219 N 219
                 0 PP

>> A_deaminase_N  Adenosine/AMP deaminase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.3      0.16   1.4e+03      40      60 ..     142     162 ..     115     196 .. 0.60
   2 ?   11.8   0.1   2.6e-05      0.23      17      67 ..     200     247 ..     190     269 .. 0.81

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.16
  A_deaminase_N  40 gnleLnekEeqaNeilmaikq 60 
                     n++L+++  ++ ++++++k+
     CCD26292.1 142 KNIKLKSEIIKVKKLIIKVKK 162
                    466666666666666666654 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 2.6e-05
  A_deaminase_N  17 pteedYetqReallekEeqlslGgnleLnekEeqaNeilmaikqeelaegl 67 
                    + ++ Y    e+  ++E +  lGg++ L++kE ++ + +++  q ++   l
     CCD26292.1 200 QLQQLYIDSEENCSTEEIMNILGGKTALKQKEDEVPDSMINNEQTDI---L 247
                    556778888899999***********************999888876...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1614  (0.0900218); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.40
# Mc/sec: 2367.26
//
Query:       CCD26293.1  [L=355]
Description: hypothetical protein NDAI_0H01190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-37  127.1   0.0    4.4e-37  126.3   0.0    1.4  1  MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
    2.4e-22   78.7   0.0    4.8e-22   77.8   0.0    1.5  1  TGS           TGS domain
    3.6e-20   72.2   0.0    7.1e-20   71.2   0.0    1.5  1  MMR_HSR1      50S ribosome-binding GTPase
    5.2e-10   39.1   0.1    1.2e-09   37.8   0.0    1.6  2  FeoB_N        Ferrous iron transport protein B
     0.0049   16.9   0.4        4.1    7.4   0.0    2.2  2  Dynamin_N     Dynamin family
  ------ inclusion threshold ------
      0.012   14.6   0.1      0.028   13.4   0.1    1.5  2  MeaB          Methylmalonyl Co-A mutase-associated GTPase Mea
      0.014   15.7   0.1        8.8    6.6   0.0    2.5  3  AAA_22        AAA domain
       0.17   11.3   0.2        1.8    8.0   0.0    2.1  2  Arf           ADP-ribosylation factor family
       0.35   10.8   1.5          3    7.7   0.2    2.7  3  RsgA_GTPase   RsgA GTPase


Domain annotation for each model (and alignments):
>> MMR_HSR1_Xtn  C-terminal region of MMR_HSR1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   0.0   2.2e-40   4.4e-37       1     106 []     173     279 ..     173     279 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.3 bits;  conditional E-value: 2.2e-40
  MMR_HSR1_Xtn   1 kgGikitstvkltkldeetvkkilkeykihnaevliredvtvDdlidvieg.nrvYipclyvlNKiDlisleeldelarepnsvviSaekelnldeL 96 
                   kgGi+it+tv+lt+l  ++++++++ey+i++ae+ +r+d+tvDdlidv+e  +r Y+p++yvlNKiD++sleel+ l+r pn+v+iS+ ke+nldeL
    CCD26293.1 173 KGGISITNTVPLTHLGADEIRAVMSEYRINSAELAFRCDATVDDLIDVLEApSRRYMPAIYVLNKIDSLSLEELELLYRIPNAVPISSGKEWNLDEL 269
                   69***********************************************877********************************************* PP

  MMR_HSR1_Xtn  97 kekiweeLnL 106
                   ++ +w++LnL
    CCD26293.1 270 LQVMWDRLNL 279
                   ********98 PP

>> TGS  TGS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   2.4e-25   4.8e-22       1      60 []     280     354 ..     280     354 .. 0.99

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 2.4e-25
                 EEEEE.TTSSEEE......EETTB-.HHHHHHHHSTTHHHHEEEEEECS.......EEEETTSBB-SSEEEEEEE CS
         TGS   1 irvyt.PdGkvpd......lprgat.veDfAykIhrslakkfiyAlVnG.......qrvgldhvLedgdvveIvt 60 
                 +r+yt P+G++pd      l++ ++ v+Df+++Ih+sl+++f+ AlV G       q vgl+h Led+dvv+I++
  CCD26293.1 280 VRIYTkPKGRIPDftdpvvLRSDRCsVRDFCNQIHKSLVDDFRNALVYGssvkhqpQYVGLSHILEDEDVVTILK 354
                 79***********************************************************************97 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   3.6e-23   7.1e-20       2     101 ..      54     152 ..      53     171 .. 0.83

  Alignments for each domain:
  == domain 1  score: 71.2 bits;  conditional E-value: 3.6e-23
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHC.TSEEEEEEETTTTCSHHHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflalee.adlillvvdaseeklkpldeelee 99 
                 v++vG p vGKStL+++ltg++++v+++ +tT+ ++ g +++kg +i+++D+pG+i+ga++++g gk++ a+ + ++l+++v+d++ + l++ ++ +e+
  CCD26293.1  54 VGFVGFPSVGKSTLLSKLTGTESEVAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARtCNLLFIVLDVN-KPLQH-KQIIEK 150
                 89*********************************************************************99978********87.43322.233333 PP

                 HH CS
    MMR_HSR1 100 ll 101
                  l
  CCD26293.1 151 EL 152
                 32 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   6.3e-13   1.2e-09       3      57 ..      54     108 ..      52     123 .. 0.96
   2 ?   -3.3   0.0       2.9   5.9e+03     107     121 ..     230     244 ..     228     248 .. 0.68

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 6.3e-13
                 EEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE---- CS
      FeoB_N   3 valvGnpnvGkttlfnaltgakqkvgNwpGvtvekkegklklkgkeveivDlPGi 57 
                 v +vG p vGk+tl+ +ltg++++v+ +  +t     g +++kg +++++DlPGi
  CCD26293.1  54 VGFVGFPSVGKSTLLSKLTGTESEVAEYEFTTLVTVPGVIRYKGAKIQMLDLPGI 108
                 779***************************************************8 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.9
                 SEEEEEETHHHHHHT CS
      FeoB_N 107 pvvlalnmideaekk 121
                 p + +ln+id ++ +
  CCD26293.1 230 PAIYVLNKIDSLSLE 244
                 667788888877655 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.3    0.0021       4.2       1      32 [.      54      85 ..      54      95 .. 0.81
   2 !    7.4   0.0    0.0021       4.1     101     145 ..      98     145 ..      92     159 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0021
                EEEEEBTTTTHHHHHHHHHTS--S---SSS-- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilprgpnptT 32
                + +vG  S GKS++l +L+g +  + + + tT
  CCD26293.1 54 VGFVGFPSVGKSTLLSKLTGTESEVAEYEFTT 85
                5789999*************986655555555 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0021
                 -SEEEEE---B-SSSGTTS...HHHHHHHSTTEEEEEEEETTS-CCC- CS
   Dynamin_N 101 kgltlvDlPGldsvnkrdq...elvkeyikkadiilavtsanhdlsns 145
                  ++ ++DlPG+++ +k      + v   ++ +++++ v++ n+ l ++
  CCD26293.1  98 AKIQMLDLPGIIDGAKDGRgrgKQVIAVARTCNLLFIVLDVNKPLQHK 145
                 57899********999999899999999999***********998854 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.1   1.4e-05     0.028      25      50 ..      48      72 ..      45      87 .. 0.86
   2 ?   -4.2   0.0       3.2   6.4e+03     171     197 ..     232     258 ..     231     266 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
                G-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB 25 kaGraqvvGltGvPGaGkstlvealg 50
                ++G a  vG+ G+P +Gkstl+++l+
  CCD26293.1 48 RTGVA-SVGFVGFPSVGKSTLLSKLT 72
                56655.58****************97 PP

  == domain 2  score: -4.2 bits;  conditional E-value: 3.2
                 EEEEE---HHHHHHHHHHHHHHHHHCS CS
        MeaB 171 iivvnkaDkkeaekaarelraalelee 197
                 i+v+nk D    e+ +  +r    +  
  CCD26293.1 232 IYVLNKIDSLSLEELELLYRIPNAVPI 258
                 899999998777777766666555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0044       8.8      11      39 ..      57      89 ..      52     137 .. 0.83
   2 ?    6.5   0.0    0.0048       9.5      70     118 ..     212     255 ..     181     266 .. 0.87
   3 ?   -3.8   0.0       7.4   1.5e+04      50      64 ..     303     317 ..     297     321 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0044
      AAA_22 11 tGesGtGKTtllrrlleqldeeakaee....er 39
                +G + +GK+tll +l+ +  e+a+ e       
  CCD26293.1 57 VGFPSVGKSTLLSKLTGTESEVAEYEFttlvTV 89
                79999***********99988776554545544 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.0048
      AAA_22  70 aerlsseellealeqalraravielliiDEaqhlrseealeeLrsllnl 118
                 a   + ++l++ le  +r+++  ++ ++  ++ l s e le L ++ n 
  CCD26293.1 212 A---TVDDLIDVLEAPSRRYMP-AIYVLNKIDSL-SLEELELLYRIPNA 255
                 4...778889999999999999.***********.**********9994 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 7.4
      AAA_22  50 stsskdllrellral 64 
                  +s +d+++++ + l
  CCD26293.1 303 RCSVRDFCNQIHKSL 317
                 458899998887665 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00092       1.8      19      67 ..      56     107 ..      49     110 .. 0.77
   2 ?    0.9   0.0      0.14   2.7e+02      95     130 ..     208     243 ..     190     277 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00092
                 EEESTTSSHHHHHHHHHHSS..CEECSSSSSEEEE.EEEETTEEEEEEEE-S CS
         Arf  19 llGLDnaGKtTilkklklee..lvttvPTigfnve.eleiknlkftvwDvGG 67 
                 ++G  + GK+T+l kl+  e  +++   T+  +v   +++k+ k+++ D+ G
  CCD26293.1  56 FVGFPSVGKSTLLSKLTGTEseVAEYEFTTLVTVPgVIRYKGAKIQMLDLPG 107
                 789999**********865511556666776776515789*******99977 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.14
                 TTHHHHHHHHHHHCTSGCCTTSEEEEEEE-TTSTTS CS
         Arf  95 eRleeakeeLkalleeeelkevallvlaNKqDlpea 130
                  R + + ++L  +le    + ++ + + NK+D  + 
  CCD26293.1 208 FRCDATVDDLIDVLEAPSRRYMPAIYVLNKIDSLSL 243
                 38888999999999999999999********97543 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.2    0.0015         3     103     125 ..      55      76 ..      14      85 .. 0.87
   2 ?   -1.1   0.1      0.77   1.5e+03      17      57 ..     130     172 ..     120     187 .. 0.80
   3 ?    0.7   0.0      0.22   4.4e+02      47      66 ..     229     247 ..     210     280 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0015
                  EEECSTTSSHHHHHHHHCTT--- CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpelel 125
                   +vG   vGKStL+ +l+++ e 
   CCD26293.1  55 GFVGFPSVGKSTLLSKLTGT-ES 76 
                  5899999**********997.33 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.77
                  -EEEEEEESTTTT--HHHHHHHH..HHHHHTT-EEEEEEE-GG CS
  RsgA_GTPase  17 dqllivvslkepelslnlldrfL..vlaeekgiepvivlnKiD 57 
                  + l+iv+ +++p  +++++++ L  v +  ++ +p i++ K +
   CCD26293.1 130 NLLFIVLDVNKPLQHKQIIEKELegVGIRLNKTPPDILIKKKE 172
                  5678999999999999999999855566777778888887765 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.22
                  -EEEEEEE-GGG--HHHHHH CS
  RsgA_GTPase  47 iepvivlnKiDlleeeeele 66 
                  ++ + vlnKiD l+ ee le
   CCD26293.1 229 MPAIYVLNKIDSLSLEE-LE 247
                  4566799****999888.33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       394  (0.0219756); expected 358.6 (0.02)
Passed bias filter:                      369  (0.0205812); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2819.64
//
Query:       CCD26294.1  [L=1669]
Description: hypothetical protein NDAI_0H01200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.5e-99  331.6   6.6    7.6e-98  327.2   2.4    3.2  2  RNA_pol_Rpb1_5   RNA polymerase Rpb1, domain 5
    1.4e-70  236.8   0.2    3.7e-70  235.5   0.2    1.8  1  RNA_pol_Rpb1_2   RNA polymerase Rpb1, domain 2
    2.9e-39  134.5   0.3    2.6e-38  131.4   0.0    2.9  3  RNA_pol_Rpb1_3   RNA polymerase Rpb1, domain 3
    7.8e-26   91.1   1.3    7.8e-26   91.1   1.3    3.8  4  RNA_pol_Rpb1_1   RNA polymerase Rpb1, domain 1
    1.3e-24   86.2   0.0    1.1e-23   83.2   0.0    2.8  1  RNA_pol_Rpb1_4   RNA polymerase Rpb1, domain 4
  ------ inclusion threshold ------
       0.31   11.4   3.2        2.5    8.5   2.4    2.8  2  Phage_int_SAM_5  Phage integrase SAM-like domain


Domain annotation for each model (and alignments):
>> RNA_pol_Rpb1_5  RNA polymerase Rpb1, domain 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.05   1.5e+02     102     190 ..     245     361 ..     213     593 .. 0.82
   2 !  327.2   2.4  2.5e-101   7.6e-98       1     265 [.     992    1614 ..     992    1616 .. 0.99

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.05
                     SSSSSSHHHHHHHHTT-SS-SS-EEEEEB-SSSSSCHHHCHHHHHHHSE............................CBTTEEEEEEEEEEEEEE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............................xxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5 102 knvtlGvprlkeilnvskniksksltvllvdeeakelekakkvkkaiek............................gikkikrilvkeaekgke 168
                     k  ++G+ ++ e+   +k++ ++ +  +++++  k++++ k+++++++k                            ++ +i r++ +++++  +
      CCD26294.1 245 KFRKDGFTKIFETALNEKQLTNNRVRGFIRQDMIKKQNQSKALNGETTKddenengfdlgrnptvrpktgstyilstEVRNILRAVFRKEQNIFK 339
                     55567999999999999999999999*****************9999998888888888888888888888888888666666666666665555 PP

                     ETEEEEEEECS--HHHHTTSTT CS
                     xxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5 169 eekelvletegvnlsevlkvee 190
                     +  + + +++ +++s+ +   +
      CCD26294.1 340 YIFHSKPNVSSTPISADMFFMD 361
                     5555555555555555555544 PP

  == domain 2  score: 327.2 bits;  conditional E-value: 2.5e-101
                      B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTSEEEETTS-EEESSGGGTS........................... CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
  RNA_pol_Rpb1_5    1 GLkvkefffhtmggReGLiDtAvkTaesGYlqRrlvkaledvvvkyddtvrnsggeivqflygedg........................... 66  
                      G+k++e++fh+m+gReGLiDtAvkT++sGYlqR+l+k+le+v+v+yd++vr+ +g+++qflyg+d+                           
      CCD26294.1  992 GIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSVRDGDGTLIQFLYGGDAvdvtkeshmtefdfcldnydallnkyn 1084
                      9******************************************************************************************** PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5   67 ............................................................................................. 66  
                                                                                                                   
      CCD26294.1 1085 psaliehldvetalkyskktlknrkkhakeahhknatkydpvlskfnpakylgsvsekfqdklesyldknsklfkshdnvsekkfralmqlky 1177
                      ********************************************************************************************* PP

                      ...B--TT-BHHHHHHHHHHHHHHCCCSSTTSSTCSSTSSSSSSHHHHHHHHTT.-SS-SS-EEEEEB-SSSSSCHHHCHHHHHHHSE..... CS
                      ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
  RNA_pol_Rpb1_5   67 ...lvepGeavGiiaaQSiGePgTQltlnTFHfaGvasknvtlGvprlkeilnv.skniksksltvllvdeeakelekakkvkkaiek..... 150 
                         l++pGeavGiia+QS+GeP+TQ+tlnTFHfaG++++nvtlG+pr++ei+++ s++ik++++t+ +++++++e+++  +++k+i+k     
      CCD26294.1 1178 mrsLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTaSAAIKTPQMTLPIWQDVSDEQAD--TFCKSISKvvlse 1268
                      ***************************************************99999****************766666..99999999999** PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5  151 ............................................................................................. 150 
                                                                                                                   
      CCD26294.1 1269 vidkvtvtettgstanntsarsyainmkffdeeeyngeydvskvelqnviavkfihaleavivkevkkqkkttvldigiavpksqtalgamet 1361
                      ********************************************************************************************* PP

                      ............................................................................................. CS
                      ............................................................................................. RF
  RNA_pol_Rpb1_5  151 ............................................................................................. 150 
                                                                                                                   
      CCD26294.1 1362 inskksaedgdeedyqkktkqavsyedpdddeletmreaeksdeemnsdmnsdaesvsdneesedvdmdnyldstiaeanknmtktqrdrqsa 1454
                      ********************************************************************************************* PP

                      ..................................................CBTTEEEEEEEEEEEEEEETEEEEEEECS--HHHHTTSTTTBE CS
                      ..................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  151 ..................................................gikkikrilvkeaekgkeeekelvletegvnlsevlkveevvd 193 
                                                                        ++++i+r+++ e e+gk+      l tegvn+++++++e ++d
      CCD26294.1 1455 mvtnhrfvtkynfddehgkwcefrielaadtekllmvniiedickkciirEVPHIDRCVHPEPENGKRV-----LVTEGVNFEAMWDQEAFID 1542
                      *****************************************************************9987.....89***************** PP

                      TTTEEESSHHHHHHHHCHHHHHHHHHHHHHHHHHHTTS---HHHHHHHHHHHTTTSS---SSTTCHCCSSSH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_5  194 ageilsndiaeileilgieaarkallkeiqevykvqgvsvndrHlelivdqmtkkgeivavnrsGinkaels 265 
                      ++ i+snd+a +l+++g+eaar+++++ei++v++++++sv++rHl+li+d+mt++g+++a+nr+G++++++s
      CCD26294.1 1543 VDGITSNDVASVLKTYGVEAARNTIVNEINNVFSRYAISVSYRHLDLIADMMTRQGTYLAFNRQGMESSTSS 1614
                      *******************************************************************99887 PP

>> RNA_pol_Rpb1_2  RNA polymerase Rpb1, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.5   0.2   1.2e-73   3.7e-70       1     165 [.     476     655 ..     476     656 .. 0.98

  Alignments for each domain:
  == domain 1  score: 235.5 bits;  conditional E-value: 1.2e-73
                     SEEESSEEEEEEEEESSS-TTEEEEEHHHHTTSEEEEE-STTTHHHHHHHHHHTTTSSSSEEEEESTTSSEEETTTT-SCHHCCTTTTS...... CS
  RNA_pol_Rpb1_2   1 GkrvdysaRsvispdpnlkldevgvPisvakkltvpeivtelnikklrklvengpevyPgasyvkredgsekklkakkrklakelekgd...... 89 
                     Gkrv+y+aRsvispdpn++++e+gvP ++a+klt+pe+vt++ni++lr++v+ngp+++Pga ++++edgs  +l  ++++++k+l+ +       
      CCD26294.1 476 GKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTSYNIAELRQAVINGPDKWPGAAQIQNEDGSLVSLVGMSAEQRKALANQLmtpssn 570
                     9***************************************************************************99999999988878899** PP

                     ........EEEEE--TTSEEEEE-SSTTSGGGEEEEEEEEESS.SSEEEEGGGHCCCT--SSS-EEEEE--SSHHHHHHHHHCSB CS
  RNA_pol_Rpb1_2  90 ........iverhvkdgdvvllNRqPsLhklsimahrvkvlek.ktlrlnlsvttayNaDFDGDemnlhlpqseearaEaeelll 165
                             +v+rh+k++d+v++NRqP+Lhk+s+m+h+v+vl++ ktlrl++++t ayNaDFDGDemn+h+pq+e+araEa +l++
      CCD26294.1 571 vgthtlnkKVYRHIKNRDIVIMNRQPTLHKASMMGHKVRVLPGeKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEAFNLAN 655
                     ******************************************99**************************************987 PP

>> RNA_pol_Rpb1_3  RNA polymerase Rpb1, domain 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   3.9e+03      63      89 ..     375     428 ..     313     450 .. 0.57
   2 !  131.4   0.0   8.7e-42   2.6e-38       1     157 []     659     836 ..     659     836 .. 0.93
   3 ?   -2.4   0.1       1.3     4e+03     101     125 ..    1267    1291 ..    1243    1344 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
                     E......BEEHHHHHHCCCHCCCCEEEE.SSSS.....................S CS
  RNA_pol_Rpb1_3  63 e......lwtgkqtfsrilpneinyerk.neek.....................d 89 
                     +      + + +q++s+il  ++++ r  n+e                      +
      CCD26294.1 375 KlgdeihENSQNQLLSKILT-TALLIRDlNDEMsklqkdkvsvddrrvifsrlmN 428
                     15555556667788888888.4544444333334455444555433344444443 PP

  == domain 2  score: 131.4 bits;  conditional E-value: 8.7e-42
                     CSEETTTTEESSS--THHHHHHHHHSSTTEEEEHHHHHHHHHHSSSCCS......SSSSSSSSBESSSEBEEHHHHHHCCCHC.......CCCEE CS
  RNA_pol_Rpb1_3   1 nilspqsgkPvigivQDsllGvyllTkedvfidreeaqqllykgvgsds......ktvtlrpailkpkelwtgkqtfsrilpn.......einye 82 
                     ++l+p sg Pv g++QD++++ ++lT +d f++re++qq++y +  ++       k +tl+p+i+kp++lwtgkq++s +l n        in+ 
      CCD26294.1 659 QYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDghatrpKLITLPPTIYKPVPLWTGKQIISTVLLNvtpadmpGINLT 753
                     689*****************************************88885667788889************************9999999988888 PP

                     EE.SSSS.........STSEEECSSEEEES--SHHHHSSSSTTSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEB-TGGGG CS
  RNA_pol_Rpb1_3  83 rk.neek.........dgkvlikngelikGvidkkvvgkksqgslihvlakeygiketvrfldslqrlgfkyllqsgftigigDt 157
                     +  ++ k         +++vl+kngel++G++dk+++g +s+ +++h l++ yg+  ++++l+ l rl+++y++   ft+g++D+
      CCD26294.1 754 SSnKI-KneywgkssnENEVLFKNGELLCGILDKSQYG-ASKFGIVHSLHEVYGPSIAAKVLSVLGRLFTNYIMSTAFTCGMDDL 836
                     76433.2477999999**********************.9********************************************6 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 1.3
                      ES--SHHHHSSSSTTSHHHHHHHHC CS
  RNA_pol_Rpb1_3  101 kGvidkkvvgkksqgslihvlakey 125 
                      ++vidk +v +++ +   ++ a+ y
      CCD26294.1 1267 SEVIDKVTVTETTGSTANNTSARSY 1291
                      4444444444333333333333333 PP

>> RNA_pol_Rpb1_1  RNA polymerase Rpb1, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.1   1.3   2.6e-29   7.8e-26       3     310 ..      10     472 ..       8     474 .. 0.73
   2 ?   -1.1   0.0      0.31   9.3e+02     176     215 ..     574     612 ..     540     615 .. 0.74
   3 ?   -1.8   0.3      0.53   1.6e+03     258     298 ..    1133    1173 ..    1074    1178 .. 0.62
   4 ?   -2.4   0.7       0.8   2.4e+03     154     154 ..    1402    1402 ..    1252    1459 .. 0.50

  Alignments for each domain:
  == domain 1  score: 91.1 bits;  conditional E-value: 2.6e-29
                     ---EEEEEE--HHHHHHH-SBB--STTSTCSTSSSSBBSSSSSSSSS-SSSSSTSTTTSSTTTT-----EEEEEECEEE-HHHHHHHHHHCTTCE CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1   3 kikeiqfgiaspeeirkwSvvevtkaetieekslkPeegGllDerlgtidkdleCetCgkkkkeCeghfGhieLakPvfhigffklilkilecvc 97 
                     +i ++ fgi+++eeir++S+ ++t++ ++++    P +gGl D +lg+  ++  C+ Cg ++k C+gh GhieL  P+++  ff+  +  l++ c
      CCD26294.1  10 EITSVDFGILTSEEIRQLSAKQITNPTVLDNLG-HPISGGLYDLSLGAFLRN-LCSSCGLDEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRTSC 102
                     799***************************995.9*************9887.8***************************************** PP

                     TTTTEBSS-TT.....................................SH....HHHHHHCSSSCC............................. CS
                     xxxxxxxxxxx.....................................xxxxxxxxxxxxxxxxxx............................. RF
  RNA_pol_Rpb1_1  98 kecskllldee.....................................kkkllsklkkrekleelk............................. 126
                      +c++l l++                                                       +                             
      CCD26294.1 103 LFCHHLKLKQIevhrfacklrllqyglidesykiddinigdlkdflenA----------------Qaeedeaiednklnesttkrdandisaqll 181
                     *********9988888888888777777777766666666655554430................043333444444666666777888889999 PP

                     .......................................CCHHHHHHHHCCS-BE-SSSSB-EEE.............................. CS
                     .......................................xxxxxxxxxxxxxxxxxxxxxxxxxx.............................. RF
  RNA_pol_Rpb1_1 127 .......................................krlkaieelckkinlcekCgavqpkl.............................. 152
                                                            + +++ ++++ +  +c++Cg+ +pk+                              
      CCD26294.1 182 rdlqqkreeyvevviataisegrttergiftatvnderkNLIHEFHKKLLTRGKCDNCGMFSPKFrkdgftkifetalnekqltnnrvrgfirqd 276
                     99999999999999999999999999999999999987767777777777888999****99*99776666666666666666664444444444 PP

                     ....EEETTEEEEEESSSST..............................SCEEEE-HHHHHHHHHCSTHHH..HHHTTSBT......TTB-GGG CS
                     ....xxxxxxxxxxxxxxxx..............................xxxxxxxxxxxxxxxxxxxxxx..xxxxxxxx......xxxxxxx RF
  RNA_pol_Rpb1_1 153 ....eeegeklkaalkkske..............................eekeklsaekvkkllkrieded..vevlgfks......sgsrPew 205
                         +              +                              + ++ + +++v+++l+ + +++  +   +f+s           + 
      CCD26294.1 277 mikkQ--------------NqskalngettkddenengfdlgrnptvrpkTGSTYILSTEVRNILRAVFRKEqnIFKYIFHSkpnvssTPISADM 357
                     44333..............2566666666666669************998444555566666666666433300333334431110003334466 PP

                     CCECCEEE--GGGS.-BEESSSSSEEBECCCCHHHHHHHH.......HHHHHHHHHSSS...SS....TCHHHHHHHHHHHHHHCC-TTSSSSSE CS
                     xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxx...xx....xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 206 liltvlPVpPpeiR.PsvqldggrrsedDlteklrdiikr.......NnrLkkaeeega...pe....liieeekelLQehvatlfdneisglkp 285
                     + + v+ VpP + R Ps   d+    e+  +++l++i+ +       N+++ k +++++         + +++    +Q  v++++d+ +++   
      CCD26294.1 358 FFMDVIVVPPTRFRlPSKLGDE--IHENSQNQLLSKILTTallirdlNDEMSKLQKDKVsvdDRrvifSRLMNAFVTIQNDVNAFIDSTKAQ--- 447
                     78999*********66654444..44444555555555432222222777777766665222221111346788889***********9977... PP

                     EBSTTSSS--THHHHHTSSSSCCCC CS
                     xxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 286 atqkskrplkslsqrLkGKeGrfRg 310
                      t+  k p+ +++q+L  KeG fR+
      CCD26294.1 448 GTTGGKVPIPGVKQALEKKEGLFRK 472
                     688999******************7 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.31
                     HHHHHHHHHCSTHHHHHHTTSBTTTB-GGGCCECCEEE-- CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1 176 aekvkkllkriededvevlgfkssgsrPewliltvlPVpP 215
                     ++  kk++++i++ d+++++ ++   + ++++ + + V+P
      CCD26294.1 574 HTLNKKVYRHIKNRDIVIMNRQPTLHK-ASMMGHKVRVLP 612
                     4456899*********99998886555.566666666666 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.53
                      STCHHHHHHHHHHHHHHCC-TTSSSSSEEBSTTSSS--THH CS
                      xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  RNA_pol_Rpb1_1  258 eliieeekelLQehvatlfdneisglkpatqkskrplksls 298 
                      ++ +    e  Q + ++++d +++  k  ++ s++++++l 
      CCD26294.1 1133 AKYLGSVSEKFQDKLESYLDKNSKLFKSHDNVSEKKFRALM 1173
                      33333444455666666666666666666666666666655 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.8
                      E CS
                      x RF
  RNA_pol_Rpb1_1  154 e 154 
                      +
      CCD26294.1 1402 K 1402
                      1 PP

>> RNA_pol_Rpb1_4  RNA polymerase Rpb1, domain 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   3.6e-27   1.1e-23      18     108 .]     895     985 ..     868     985 .. 0.80

  Alignments for each domain:
  == domain 1  score: 83.2 bits;  conditional E-value: 3.6e-27
                     HHHHHHHHHHHHHHHHHHH.HHHHHHHCSTTTSHHHHHHHCTSSS-HHHHHHHHTB-EEEEBTTBSS--SSTSCSSTTSSSSESSTTTSSEE CS
  RNA_pol_Rpb1_4  18 leelfeakinkilnkardk.agkiaskslaasNsiliMvksGaKGsiinisqiagclGqqnvegkripkgfsgrtlphfkkidespesrGFv 108
                     l++++ +k+n+i +k+ +k + +   k+ + +Ns++ M+ sGaKGs++n+sqi+++lGqq++eg+r+p ++sg+tlp+fk++++++ + G++
      CCD26294.1 895 LDAVTSSKVNSITSKVVSKcVPDGTMKKFP-YNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYI 985
                     455555666666666666543444444444.7**********************************************************97 PP

>> Phage_int_SAM_5  Phage integrase SAM-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       0.5   1.5e+03      48      95 ..     876     926 ..     875     931 .. 0.80
   2 ?    8.5   2.4   0.00082       2.5       3      79 ..    1098    1172 ..    1096    1185 .. 0.82

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.5
                      HHHHHHHHHHH...HHTS---HHHHHHHHHHHHHHHHHHHHTTS--S-HHH CS
  Phage_int_SAM_5  48 kefleeFedYL...kkkkglsentiskyfkklkavlnkAikegilkknpyp 95 
                       e+l++ e+ L   +k+  l   t sk  ++  +v++k++ +g +kk py+
       CCD26294.1 876 AELLKRLEEILrdnNKSGILDAVTSSKVNSITSKVVSKCVPDGTMKKFPYN 926
                      67777788888665555577888999999999**************99986 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00082
                       HHHHHHHTHHHHTTS-HHHHHHHHHHHHHTTTS-..S---TTT--HHHHHHHHHHHHHTS---HHHHHHHHHHHHHH CS
  Phage_int_SAM_5    3 ldyfkeyiekkkkkgskgtlrnykstlkhlkkFlkkkditfeeidkefleeFedYLkkkkglsentiskyfkklkav 79  
                       l+y k+ ++++kk  +++  +n +++   l kF+  +  ++  + ++f  + e YL k+++l ++  +   kk++a+
       CCD26294.1 1098 LKYSKKTLKNRKKHAKEAHHKNATKYDPVLSKFN--PAKYLGSVSEKFQDKLESYLDKNSKLFKSHDNVSEKKFRAL 1172
                       689999****************************..99******************666665555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1669 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1719  (0.0958782); expected 358.6 (0.02)
Passed bias filter:                      681  (0.0379832); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.17u 0.32s 00:00:01.49 Elapsed: 00:00:00.51
# Mc/sec: 9863.86
//
Query:       CCD26295.1  [L=390]
Description: hypothetical protein NDAI_0H01210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.3e-10   39.1   0.0    1.8e-09   37.8   0.0    1.7  1  SWIRM     SWIRM domain
  ------ inclusion threshold ------
        4.6    6.8  11.2        8.9    5.9  10.8    1.5  1  SR-25     Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0     2e-13   1.8e-09       9      88 ..     310     381 ..     304     382 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.8 bits;  conditional E-value: 2e-13
       SWIRM   9 dslhpiEkellselfngkdktpeeYlkiRnkiial..yrenpkeyltvteaqkalkrrrltgidvnllsrihefLerwGlIN 88 
                 ++lhp E +l++ l+      ++ Yl+++++++ +  yr +    +++t+aqka+k      idvn++sr+++++e++G++N
  CCD26295.1 310 EQLHPAELKLAEILR----LPCDLYLDSKRRLFLEkfYRFKNGLPFRRTDAQKACK------IDVNKASRLYAAFEKIGWFN 381
                 78********99999....************99652266445777***********......9******************9 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9  10.8   0.00099       8.9      60     115 ..     155     217 ..     131     232 .. 0.46

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.00099
       SR-25  60 rrrssssssssssssssssssssssssddrkkrgkk.kdkkkkkkkkk......kkkkkekkk 115
                 +rr+  +s + s ssssss+  +sss + r+kr+kk k++ ++           +++ + k+k
  CCD26295.1 155 NRRHHKTSVTFSPSSSSSSTEPISSSYNLRHKRNKKgKATNEELDDLPlithtpRRNIMAKRK 217
                 233344444444444445555555555555555443133333332222444544444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       807  (0.0450109); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2684.41
//
Query:       CCD26296.1  [L=620]
Description: hypothetical protein NDAI_0H01220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-83  279.7   8.5    2.7e-52  178.0   0.1    3.0  2  DUF3589   Beta-mannosyltransferases


Domain annotation for each model (and alignments):
>> DUF3589  Beta-mannosyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   5.3   4.9e-33   8.7e-29       2     189 ..     108     339 ..     107     346 .. 0.84
   2 !  178.0   0.1   1.5e-56   2.7e-52     243     484 ..     358     599 ..     349     605 .. 0.85

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 4.9e-33
     DUF3589   2 Ceelksekslevska.knlkadlekilkkllkelenseylkelkkffkeelkeqlkekti.ekhwyrlagssvwLeqygvhlmvsRvlyskkgkknkpv 98 
                 C++l+  +++e s   ++l +dl+++ ++ll++    ++++ +++ ++++l+ + +e++i ek+w+ + g svw + y+v+++ sRv+ys+k ++n+p 
  CCD26296.1 108 CSDLEYINDIEYSYWvHTLPSDLKEVRRELLTS----PAFEFVEPQLHSDLEINWDEEKIlEKNWLTFGGVSVWSKRYNVYFVYSRVIYSRKAQRNHPH 202
                 888888888888764145677777777777765....9**************999887666************************************** PP

     DUF3589  99 vSllYaqvfdenWkelenve.....Lvvpteekeekek..............................................kkkfkklkfPsflpi 146
                 vSl+  qvfd++W+e++ ++     ++vp++++ e +k                                                +   + +P++l+i
  CCD26296.1 203 VSLVRGQVFDKDWNEIHGFKvpfndIIVPKDDEVELQKldedlglydckkqlghkekelasneyenclvevnklklknekrkkeILQKYYTIYPTVLNI 301
                 ****************986522222677777776666699*************************************9988753133334569****** PP

     DUF3589 147 pfyhnlkktkkryyGpEDpRillvknekgyeEPlivfNskhrk 189
                 pf      t   y GpEDp i+++ ++ ++eEPli fN+++++
  CCD26296.1 302 PFIS----TGADYEGPEDPHIIMR-ETAEFEEPLIFFNMQDHN 339
                 *985....568899*******987.5778**********9865 PP

  == domain 2  score: 178.0 bits;  conditional E-value: 1.5e-56
     DUF3589 243 keLkkenekrakieKNWtpfiseeerkkkg....ydkkiyfvyrwenLevLkCeleeaesseCefeyklek...kkkekvgplrGGteLininellees 334
                  e++++ +  + +eKNW pf++ +++k +        +i+f+y++ +Le+LkC+l+    ++Cef+++ ++   +k+++++ +rG t++in+ ++++  
  CCD26296.1 358 IEFHINGRGIKGKEKNWVPFFHADSSKGQAesqfSRGTIHFIYSFYPLEILKCSLN---DGDCEFVFEGSTlelDKDTEFSGMRGSTQFINLPNVIP-- 451
                 677888888999*********98776655433446679*****************9...689******9999999999**************99999.. PP

     DUF3589 335 lkkklpknreiwiGfaRahlkkCGCgksmYRPnlvvlvkdkekykishvssfisldievlgwkkkeklCegknvliPngissweiekdk.ekvkaeDyl 432
                        ++++w+Gf++ hl+ CGCg + YRP l v+v+++  y+ + v   ++++i+vl+w+ k + C + nvl Pn+i +we+ +++  ++k eDy+
  CCD26296.1 452 ----TLAGKQLWVGFPKFHLNGCGCGVKYYRPMLSVIVESNGVYHQELVVPTLDFNIDVLSWDLKGHYCFDVNVLNPNSINYWEVVSQDpVTKKYEDYM 546
                 ....46899***************************************************************************98776478899**** PP

     DUF3589 433 tltlsvaDetveivhikgllkailksleeee.eesekeeekkkkknndnikCa 484
                 +lt+s aD++ ++v +kgll++il   ++++ +e  + +e+ ++   +++kC 
  CCD26296.1 547 SLTVSEADHNTKVVIVKGLLNYILGIYKDKNiKEDFQITEHANSIIAESVKCI 599
                 ************************74433330223344444455556666775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       749  (0.0417759); expected 358.6 (0.02)
Passed bias filter:                      411  (0.0229238); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4228.37
//
Query:       CCD26297.1  [L=492]
Description: hypothetical protein NDAI_0H01230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1228  (0.0684924); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.43
# Mc/sec: 3400.89
//
Query:       CCD26298.1  [L=224]
Description: hypothetical protein NDAI_0H01240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-08   32.5   7.2    6.5e-08   32.5   7.2    2.8  3  bZIP_2    Basic region leucine zipper


Domain annotation for each model (and alignments):
>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.28     5e+03      25      34 ..      18      27 ..      12      47 .. 0.56
   2 ?   -1.0   1.2      0.11     2e+03      26      47 ..     117     138 ..     107     146 .. 0.71
   3 !   32.5   7.2   3.7e-12   6.5e-08       5      52 ..     146     193 ..     142     195 .. 0.92

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.28
                HHHHHHHHHH CS
      bZIP_2 25 akeeeleerv 34
                 k++e+ + +
  CCD26298.1 18 TKKNENDQDN 27
                3444444444 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  26 keeeleervkeLeeeNaqLrqk 47 
                 k+e++ + +ke e+ ++ L+q+
  CCD26298.1 117 KNESNSDLIKEKENSIEPLQQQ 138
                 6677777777777777777666 PP

  == domain 3  score: 32.5 bits;  conditional E-value: 3.7e-12
                 XXXXXXXXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   5 yrerRrkNreAarrsRekkkakeeeleervkeLeeeNaqLrqkveqLe 52 
                 + e++rkN+eA+ r+R +kk+ke+++ ++++eL+ ++++L +k+++L 
  CCD26298.1 146 QLEKKRKNTEASTRFRIRKKQKEKDNINKLNELNIKISKLYCKIDKLL 193
                 678999**************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3453  (0.192593); expected 358.6 (0.02)
Passed bias filter:                      314  (0.0175135); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 1546.53
//
Query:       CCD26299.1  [L=270]
Description: hypothetical protein NDAI_0H01250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       481  (0.026828); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1944.25
//
Query:       CCD26300.1  [L=336]
Description: hypothetical protein NDAI_0H01260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-20   72.3  27.6    4.3e-20   72.3  27.6    2.2  2  LRS4       Monopolin complex subunit LRS4
     0.0088   16.0   7.5     0.0088   16.0   7.5    3.0  3  FlxA       FlxA-like protein
  ------ inclusion threshold ------
       0.78   10.3  11.9      0.046   14.2   5.2    2.2  2  APG6_N     Apg6 coiled-coil region
        1.3    8.9   6.8      0.093   12.5   1.2    2.1  2  DivIC      Septum formation initiator
        4.6    6.5   8.8       0.15   11.4   2.3    1.7  2  DUF3450    Protein of unknown function (DUF3450)


Domain annotation for each model (and alignments):
>> LRS4  Monopolin complex subunit LRS4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3  27.6   1.2e-23   4.3e-20       1     231 [.       5     238 ..       5     281 .. 0.73
   2 ?   -7.0  10.5         5   1.8e+04     169     219 ..     268     331 ..     237     336 .] 0.45

  Alignments for each domain:
  == domain 1  score: 72.3 bits;  conditional E-value: 1.2e-23
                 HHHHHHHHHHHHHHHHHHHHH..........HHHHHHHXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        LRS4   1 lqlisdyydskldneriYlekaLnlahllrsdslqksfldalktnatdse........lqnekltdEklllqeQinqLnsdlqiqkseneklrklnKdq 91 
                 lql+++yy++++ ne+iY+++ L   h    +++++s + +l  ++                ++ dE+lllq+Q+  L+ +lq   +en++l++l+K  
  CCD26300.1   5 LQLMANYYKAVIANEKIYYDY-LIQEHEHDKNQSEQSISAPLSSSSFAPPttgtittaSTTPRMIDETLLLQKQLTTLTAQLQELTKENDHLKELQKST 102
                 89*******************.7777777778888888888877776655677777765677889********************************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXX CS
        LRS4  92 kalleSklsskesevdrfKikLeteesnskvrlqvresklatqdrklrskkksterkslLprvssfkLlSPivgtrqpnatsgsp..lsvtPsspsaqs 188
                 k l+e kl+s ++ +   K     ++ n +++++  +++      kl     +++ +      ++f+LlSPi  +r++    g++  l ++ +s s + 
  CCD26300.1 103 KSLMETKLNSYKKRLS--K--TAFNNNNNSSSSNNSNNS-----LKLDTTSGKNDND------TGFHLLSPINTNRNKSKLPGKKslLHNNYNSTSIKG 186
                 ****************..4..333333333333322222.....2222222233444......59************9666554321566668888777 PP

                 XX................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        LRS4 189 kq...............PsglrellkhgddTifdnvsdindddtdedsessflletiq 231
                 k+                  lre+l++g+ T+fd      ddd + +++ s ++++  
  CCD26300.1 187 KAekdknegvfddepsnRTSLREVLSSGKHTLFD------DDDEEGEKDGSEDVNVDT 238
                 778899999999994444569************9......555555555555554422 PP

  == domain 2  score: -7.0 bits;  conditional E-value: 5
                 XXXXXXXXXXXXXXXXXXXXXX...............XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        LRS4 169 pnatsgsplsvtPsspsaqskq..............PsglrellkhgddTifdnvsdindddtde 219
                   ++s s+ + +P+s s   ++                + ++ +k+++  i  +v + +dd++++
  CCD26300.1 268 SVSQSISKPTSNPDSNSKSMSKkaekktvnkrkntgSNNTKKGKKKLR-LIRKKVHQKLDDNDND 331
                 334444555555544443333334444555555554223333333322.3344444443333333 PP

>> FlxA  FlxA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       2.1   7.6e+03      47      52 ..      34      39 ..      27      48 .. 0.42
   2 !   16.0   7.5   2.5e-06    0.0088       8      97 ..      60     148 ..      54     152 .. 0.82
   3 ?   -0.6   3.2      0.36   1.3e+03      16      98 ..     281     299 ..     258     332 .. 0.56

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 2.1
        FlxA 47 kkkqqq 52
                k++ +q
  CCD26300.1 34 KNQSEQ 39
                112222 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2.5e-06
        FlxA   8 ssssssgsasqiasLqkQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeekskskqegvnk 97 
                 ++s++  + +++  LqkQ+++l+ qL+el+++++  ke +k  + l+++++++ ++ + +    ++++ +++++s+++ k   +++g+n 
  CCD26300.1  60 TASTTPRMIDETLLLQKQLTTLTAQLQELTKENDHLKELQKSTKSLMETKLNSYKKRLSKTAFNNNNNSSSSNNSNNSLKLD-TTSGKND 148
                 55555666677788******************78778878888999**************9999999999999999988876.4577665 PP

  == domain 3  score: -0.6 bits;  conditional E-value: 0.36
        FlxA  16 asqiasLqkQiknlqkqLkelsesdeltkeekkkqqqliqaQIqqlqaQIaqlqqqqaekaqekqqsekeekskskqegvnkp 98 
                 +s+++s+ k  ++                                                                ++vnk+
  CCD26300.1 281 DSNSKSMSKKAEK----------------------------------------------------------------KTVNKR 299
                 3333333333222................................................................222222 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   5.2   1.3e-05     0.046       8     121 ..       2     137 ..       1     147 [. 0.76
   2 ?   -0.5   0.5      0.47   1.7e+03      55      63 ..     292     300 ..     240     334 .. 0.49

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.3e-05
      APG6_N   8 dlLleeldkqleqaekerdaYeeflkklkkekkeeek.....................qdeeleeleeeleklekeeeelleeLkelekereeleaela 85 
                 ++Ll+ + + ++++ +  + Y ++l + ++++k++++                     + + + +  +e   l+k+  +l ++L+el ke++ l++  +
  CCD26300.1   2 STLLQLMANYYKAVIANEKIYYDYLIQEHEHDKNQSEqsisaplssssfappttgtitTASTTPRMIDETLLLQKQLTTLTAQLQELTKENDHLKELQK 100
                 68***********************99999988876689************999999988888999999999*******************99987666 PP

      APG6_N  86 aleeelealeeeeerfwreyne.lqlelleleeelds 121
                 + ++  e + +  ++ +++     + + ++ ++  +s
  CCD26300.1 101 STKSLMETKLNSYKKRLSKTAFnNNNNSSSSNNSNNS 137
                 6555444443333333333332134444444444444 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.47
      APG6_N  55 eleklekee 63 
                 e ++++k +
  CCD26300.1 292 EKKTVNKRK 300
                 111122222 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.2   2.6e-05     0.093      22      50 ..      74     102 ..      63     110 .. 0.89
   2 ?   -2.9   0.4       1.6   5.8e+03      35      41 ..     313     319 ..     287     333 .. 0.54

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.6e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHCC- CS
       DivIC  22 lkqeiaalqaelaklkaeneeLeaevkdL 50 
                 l++++++l+a+l++l++en+ L++  k  
  CCD26300.1  74 LQKQLTTLTAQLQELTKENDHLKELQKST 102
                 799********************998876 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.6
                 HHHHHHH CS
       DivIC  35 klkaene 41 
                 kl+  ++
  CCD26300.1 313 KLRLIRK 319
                 3333333 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   2.3   4.1e-05      0.15      43      84 ..      68     109 ..      59     122 .. 0.83
   2 ?   -2.4   0.5      0.68   2.4e+03      28      60 ..     289     321 ..     268     331 .. 0.64

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 4.1e-05
     DUF3450  43 ddekqellaeyralkeeleslevyneqlerlvasqeqeiasl 84 
                  de+  l++++++l+++l++l+++n++l++l++s ++ ++  
  CCD26300.1  68 IDETLLLQKQLTTLTAQLQELTKENDHLKELQKSTKSLMETK 109
                 589999***************************999888754 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.68
     DUF3450  28 avaaaaqsqkkidklddekqellaeyralkeel 60 
                   a+++ ++k+++  ++++++ ++++r +++++
  CCD26300.1 289 KKAEKKTVNKRKNTGSNNTKKGKKKLRLIRKKV 321
                 344555566666666666666666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3252  (0.181382); expected 358.6 (0.02)
Passed bias filter:                      563  (0.0314016); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        21  (0.00117129); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.72u 0.31s 00:00:01.03 Elapsed: 00:00:00.48
# Mc/sec: 2119.95
//
Query:       CCD26301.1  [L=656]
Description: hypothetical protein NDAI_0H01270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-74  250.6   1.8    1.8e-74  250.6   1.8    1.5  2  Mannosyl_trans3  Mannosyltransferase putative
  ------ inclusion threshold ------
       0.13   12.6   1.3       0.69   10.3   0.4    2.5  2  Thioredoxin_8    Thioredoxin-like


Domain annotation for each model (and alignments):
>> Mannosyl_trans3  Mannosyltransferase putative
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2      0.44   3.9e+03     116     151 ..      99     135 ..      96     154 .. 0.65
   2 !  250.6   1.8     2e-78   1.8e-74       1     275 []     270     552 ..     270     552 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.44
  Mannosyl_trans3 116 eeYkktglllwkdrdlwkrstspkfyeiae.nkleps 151
                      ++++++ ll w ++d+  +++++ +y ia  +++ep+
       CCD26301.1  99 NSFEEQTLLHWFNKDTQSTRINQCKYLIATqYNVEPN 135
                      4567777777777777777777777777765444444 PP

  == domain 2  score: 250.6 bits;  conditional E-value: 2e-78
  Mannosyl_trans3   1 gkGIVisgggkesllalrlIkvLralgnkLPIeivikkeelekefcekilpaa.eepkqevwfvnakcvlnedylgkefkgfqnKalAllfssF 93 
                      gkGIV+++++ +s +  + +kvL++l+n+LPI+i+ k++e+++ef++++ +++ +e+kq+v ++n++++l++ +++k++ +f nK+lA++f++F
       CCD26301.1 270 GKGIVVTMSEGDSYMFKKQLKVLDHLNNELPIQIITKGNEFSTEFINDLSNFVqKETKQKVAILNISSMLDPAFADKYIVNFYNKWLAVIFNTF 363
                      89******999999889**********************************99899************************************** PP

  Mannosyl_trans3  94 eevllLDaDnvplknpdklFeseeYkktglllwkdrdlwkrstspkfyeiaenklepskeeskyfgkkerek..........eseevplhdlfg 177
                      +e+++LDaD+vp+++++++Fe++++k++g+ll+kdr +++++t  ++++ ++  leps+ e ky ++k   +          + e ++++++f+
       CCD26301.1 364 QEIIILDADVVPFVPINDFFEEKKFKNSGMLLYKDRLMVNEHTFSYCIDSMK-FLEPSSLELKYLNTKLLVDsnteiaippsSEELSVYYNFFK 456
                      ****************************************************.*************99988899*******8888899****** PP

  Mannosyl_trans3 178 tipdhssesGlvvinKkkhlktLllalylnlygpkykllsqgaagegdKEtfwlaahvlgekYyfvkekaaaiGeltkkekkk....seskeic 267
                      +   h+++sGlvvinK+++l++Lll++ l+l   k++++++g     dKE+fwl+++++g++Y++ + + ++ G+l +++       +++++ic
       CCD26301.1 457 NLRLHHIDSGLVVINKQEKLNGLLLSFALHLD-GKLRRCVYG-----DKEFFWLGQLFIGQDYSIYSMDGGVSGPLGETNPDGknsvANEHYIC 544
                      ********************************.59*******.....*****************************997554479999999*** PP

  Mannosyl_trans3 268 saqlghld 275
                      saq+ h+d
       CCD26301.1 545 SAQISHVD 552
                      ******98 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.21   1.9e+03      47      80 ..     257     291 ..     254     310 .. 0.80
   2 ?   10.3   0.4   7.7e-05      0.69      16      70 ..     311     364 ..     303     374 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.21
                    HHHHHHHGGGS.-TTSEE.EE-TT-HHHHTT-S-- CS
  Thioredoxin_8  47 eeefekylkkn.kkpwlsvpfddkkrnklkkkynv 80 
                     e +  y++k+ + + + v+ ++++++ +kk+++v
     CCD26301.1 257 SEFWYYYTQKMsMGKGIVVTMSEGDSYMFKKQLKV 291
                    57899999999555888999999999999998887 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 7.7e-05
                    HHHHHHHHHHHHHHHHHTTSEEEEEEE-SS-HHHHHHHGGGS-TTSEE.EE-TT- CS
  Thioredoxin_8  16 ckaftpklkelyeklkkkkkveivyvsldkkeeefekylkknkkpwlsvpfddkk 70 
                    +++f++ l+++ +k   k+kv i+ +s+  +     ky+ +  ++wl+v f+  +
     CCD26301.1 311 STEFINDLSNFVQKET-KQKVAILNISSMLDPAFADKYIVNFYNKWLAVIFNTFQ 364
                    6889999999988888.7*********************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       741  (0.0413297); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.28s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4478.82
//
Query:       CCD26302.1  [L=1392]
Description: hypothetical protein NDAI_0H01280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-62  211.3  63.7    1.4e-34  119.4  28.7    3.3  4  ABC2_membrane    ABC-2 type transporter
    4.6e-28   98.4   0.0    3.6e-16   59.9   0.1    2.4  2  ABC_tran         ABC transporter
    1.4e-23   82.6   6.8    2.5e-21   75.4   0.3    3.6  3  PDR_CDR          CDR ABC transporter
      9e-06   25.7   0.2    1.9e-05   24.6   0.2    1.4  1  RsgA_GTPase      RsgA GTPase
    4.8e-05   23.3   2.6     0.0061   16.4   0.2    2.9  2  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
     0.0002   20.9   0.4     0.0065   15.9   0.4    2.4  1  SMC_N            RecF/RecN/SMC N terminal domain
    0.00047   20.7   0.0     0.0011   19.5   0.0    1.6  1  AAA_23           AAA domain
     0.0031   17.9   0.3     0.0067   16.8   0.3    1.5  1  AAA_16           AAA ATPase domain
     0.0057   16.3   0.2      0.015   14.9   0.1    1.7  2  AAA_25           AAA domain
  ------ inclusion threshold ------
      0.022   15.0   0.2      0.071   13.4   0.2    1.9  1  AAA_22           AAA domain
      0.025   13.7  60.0       0.18   10.9  15.2    3.6  3  ABC2_membrane_3  ABC-2 family transporter protein
      0.044   13.5   0.2       0.12   12.1   0.2    1.7  1  AAA_29           P-loop containing region of AAA domain
      0.079   13.5   0.0       0.19   12.3   0.0    1.6  1  AAA_18           AAA domain
       0.18   11.9   0.3       0.73    9.9   0.2    2.1  2  MMR_HSR1         50S ribosome-binding GTPase


Domain annotation for each model (and alignments):
>> ABC2_membrane  ABC-2 type transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4  28.7   1.1e-37   1.4e-34       2     210 .]     357     566 ..     356     566 .. 0.98
   2 ?   -1.4   0.1         1   1.3e+03      54      75 ..     628     645 ..     610     670 .. 0.58
   3 !  105.8  17.0   1.5e-33     2e-30       2     209 ..    1043    1252 ..    1042    1253 .. 0.97
   4 ?   -2.6   0.4       2.4   3.1e+03      60     128 ..    1333    1347 ..    1313    1366 .. 0.53

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 1.1e-37
  ABC2_membrane   2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlg.nsedglnrpgllffsvlflafsaltsvapvferergvlerelvsplyslsay 96 
                    qik ++ r f ++++d s++ ++++i+ ++++lv+g++f+ ++ ++ + ++r  l ff++lf++f+al+ + p+++++++v+++++   +y  ++ 
     CCD26302.1 357 QIKSCTIRAFERIIGDQSYI-ISQFISVVIQSLVIGSLFYEVPkTTIGSFSRGSLTFFAILFFTFLALADM-PSTFQRNSVIVKHTQLHFYYGWVE 450
                    99******************.**********************9999999**************9999888.************************ PP

  ABC2_membrane  97 vlakvlvelpvsllqalifllivyflvgldls..rfflflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsm.pkwl 189
                     la+++++ ++ +l+++if++i yfl +l+++  rff+fll+l ++ ++++sl+ l + l+p++  a++la+++ll + +++ ++i +++m p w+
     CCD26302.1 451 TLASTIYDYMFKFLLVVIFSIILYFLAHLQYDaaRFFIFLLFLSFYNFCMVSLFNLTALLSPTLAFANLLAGILLLAIAMYASYVIHLEDMhP-WF 545
                    *******************************************************************************************77.** PP

  ABC2_membrane 190 qwiaylnPltyavealrsnlf 210
                     wiaylnP + a+ea++sn++
     CCD26302.1 546 VWIAYLNPAMFAMEAILSNEL 566
                    ******************985 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1
  ABC2_membrane  54 gllffsvlflafsaltsvapvf 75 
                    g++++++ f+ f   +s+ +v+
     CCD26302.1 628 GIIIGFLCFNLF---SSL-FVS 645
                    333333333332...222.333 PP

  == domain 3  score: 105.8 bits;  conditional E-value: 1.5e-33
  ABC2_membrane    2 qikallkreflqrwrdpslgllwrliqplllalvfgtvfgnlgnsedglnrpgllffsvlflafsaltsvapvferergvl.erelvsplysls 94  
                     q+++++ r++l  +rd  +   +++i     +l++g+ f++++ + +gl+++ +l f+ l l+  ++ +v+    + + v+ +re +s++y++s
     CCD26302.1 1043 QLRVIMHRQYLCTKRDVGYV-SSKFILNAGAGLFIGFSFWRTKRNISGLQNAIFLSFMNLCLSSPLINQVQDKALQSKDVYlAREASSNTYHWS 1135
                     99***************999.**********************899999999999999999999****************************** PP

  ABC2_membrane   95 ayvlakvlvelpvsllqalifllivyflvgldls.rf.flflllllltalaasslgllisalapsfedasqlaslvllpllllsGffipidsmp 186 
                       +l+++l+elp+++  +++f+l++yf  g+d s ++ + f++  +l++ + +++gl++   +p++++a++++ ++++++  ++G++ p++   
     CCD26302.1 1136 ILLLSQTLIELPLAVGSSTLFFLCCYFCCGFDNSpHIaGVFYFNYILFSAYYLTFGLWLLYSSPDLQTAAVFVAFFYSFTASFCGVMQPYSLFV 1229
                     **********************************86679999***************************************************8 PP

  ABC2_membrane  187 kwlqwiaylnPltyavealrsnl 209 
                     ++++++++++P+ty+++ + s l
     CCD26302.1 1230 GFWKFMYRVSPYTYFIDTFTSLL 1252
                     8*****************99876 PP

  == domain 4  score: -2.6 bits;  conditional E-value: 2.4
  ABC2_membrane   60 vlflafsaltsvapvferergvlerelvsplyslsayvlakvlvelpvsllqalifllivyflvgldls 128 
                     v+f+++ +++                                                      g++l+
     CCD26302.1 1333 VVFNFVCMFI------------------------------------------------------GFYLT 1347
                     2222222222......................................................33332 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0     6e-12   7.7e-09       2     136 ..      54     203 ..      53     204 .. 0.91
   2 !   59.9   0.1   2.8e-19   3.6e-16      12     137 .]     762     892 ..     752     892 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 6e-12
                 EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--....SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..............HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..............xxx RF
    ABC_tran   2 knvslklkegekvaivGenGaGKStLlkllagllkp....teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..............esd 82 
                 +++++k+ ege+v ++G+     S L+++l + +k+     eG++++++++ k    ++  +ei +  +++ +fp ltv+++              e+ 
  CCD26302.1  54 NDLTFKVDEGEVVLVLGNP---TSDLFQALFHGHKNlsytPEGSVRFKDNEYKA-FSSKCPHEIIYNNEQDIHFPFLTVEQTvdfalrckfnipteERV 148
                 799**************98...589*****99888888889*********9999.7788888999999999********999*********99875444 PP

                 TCHHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  83 eeiekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpt 136
                 +  +++l+++gl+++ +t v+++  + +SgG+++r+++ ++++ + +++l+D+ t
  CCD26302.1 149 AMRNELLKEFGLSHVLKTFVGNDYvRGVSGGERKRISIIETFIANGSVYLWDNST 203
                 45899***************99889***************************988 PP

  == domain 2  score: 59.9 bits;  conditional E-value: 2.8e-19
                 SEEEEEESTTSSHHHHHHHHTTSS--..SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHHHHHHHSTTGGTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxxxxxxxxxxx RF
    ABC_tran  12 ekvaivGenGaGKStLlkllagllkp..teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdeeiekalsklglkelk 98 
                  ++a++Ge+GaGK+tLl++l++ ++     Ge+l+dg++l++  +  +r++ig+++q++ + + ltv+e+           +++ ++++++ l+l+   
  CCD26302.1 762 GLTALMGESGAGKTTLLNVLSQRVTTgvVTGELLIDGNPLTN--IDAFRRSIGFVQQQDVHLELLTVKESleiscnlrgdGDKAYLSTVANLLKLPA-- 856
                 478*********************99899************9..9**************************99998887666666888888888877.. PP

                 CBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEE.EESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxx RF
    ABC_tran  99 dtvvksspssLSgGqkqrvalarallkkpklll.lDEpta 137
                 ++ v    + LS  +++ +++   l++kp+lll lDEpt+
  CCD26302.1 857 NKLV----ADLSPTERKLLSIGVELVTKPSLLLfLDEPTS 892
                 7777....9********************987549***96 PP

>> PDR_CDR  CDR ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   1.1       7.3   9.3e+03      49      69 ..     485     505 ..     473     513 .. 0.70
   2 !   75.4   0.3   1.9e-24   2.5e-21       1      72 [.     578     649 ..     578     659 .. 0.97
   3 !   19.8   1.5   4.4e-07   0.00056      29      68 ..    1306    1344 ..    1303    1352 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 7.3
     PDR_CDR  49 nfgiliaflifflalyllate 69 
                  f i ++fl f+ ++ + +++
  CCD26302.1 485 RFFIFLLFLSFYNFCMVSLFN 505
                 466777777777777665554 PP

  == domain 2  score: 75.4 bits;  conditional E-value: 1.9e-24
     PDR_CDR   1 vPsgpgyenvseenrvCavvGavpGqeyVsGddYlelsfgyssshlwrnfgiliaflifflalyllatelis 72 
                 +P+gp+y+n++ ++++Ca +Ga+ G++yV G+dYl++ ++y+++h+wrnfgi+i+fl f l+  l+++e+i+
  CCD26302.1 578 IPRGPTYNNITFAHKACAWQGATLGNNYVRGQDYLRSGLKYTYHHVWRNFGIIIGFLCFNLFSSLFVSEYIT 649
                 8*********************************************************************97 PP

  == domain 3  score: 19.8 bits;  conditional E-value: 4.4e-07
     PDR_CDR   29 VsGddYlelsfgyssshlwrnfgiliaflifflalyllat 68  
                    Gdd+l+ + + s++++wrnfgi +af++f +++ ++ +
  CCD26302.1 1306 TVGDDFLAVE-NMSYHNRWRNFGIECAFVVFNFVCMFIGF 1344
                  5699999977.899*****************999988765 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.2   1.5e-08   1.9e-05      59     124 ..     726     786 ..     713     796 .. 0.68

  Alignments for each domain:
  == domain 1  score: 24.6 bits;  conditional E-value: 1.5e-08
                  --HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT-- CS
  RsgA_GTPase  59 leeeeeleelkeelealgyevllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpele 124
                  ++  e +++     ++++y+v      +k+ +++++  +++ +++l+G+SG+GK+tL+n+l ++ +
   CCD26302.1 726 TKAVE-TQKHVISWRNINYTVE----GDKRLINDVSGFISSGLTALMGESGAGKTTLLNVLSQRVT 786
                  22222.3334444444444443....456789*****************************98743 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1      0.01        13       1      20 [.     763     782 ..     763     806 .. 0.85
   2 !   16.4   0.2   4.8e-06    0.0061     236     296 ..     862     919 ..     850     924 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.01
      AAA_21   1 lnvliGpNgsGKSnLLdald 20 
                 l++l G  g+GK++LL  l+
  CCD26302.1 763 LTALMGESGAGKTTLLNVLS 782
                 699*************9995 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 4.8e-06
      AAA_21 236 elSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltT 296
                 +lS   ++ll + + l   ++   ll++DEp +gL+ ++  +++++lk+ls+  +Q il T
  CCD26302.1 862 DLSPTERKLLSIGVELVTKPS--LLLFLDEPTSGLDAEAALTIVQFLKKLSQ-QGQAILCT 919
                 667788888777777777665..79***************************.78877665 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.4   5.1e-06    0.0065      17     202 ..     754     925 ..     742     940 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5.1e-06
                 EEEEETTSSEEEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  17 tvilpfsksftaivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseyking 115
                  v++ +s+++ta++G+ G+GK+ ll+ +    ++r +      + + li   +   +++  + +i f ++++    + e +++  + + + + + + +g
  CCD26302.1 754 DVSGFISSGLTALMGESGAGKTTLLNVL----SQRVT--TGVVTGELLIDG-NPLTNIDAFRRSIGFVQQQDV---HLELLTV--KESLEISCNLRGDG 840
                 5666677777777777777777776644....53333..344445556665.555555555555555444443...2222222..23333344566677 PP

                 EEE-HHHHHHHHHC.TT-STTCS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHC CS
                 xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 116 kevtkkevselles.agiskelLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreeml 202
                  ++  + v++ll+  a+     LS  e++L+++ + +     kp+ l +lDe  + LD++    ++++lk+ s++ Q i  ++++   
  CCD26302.1 841 DKAYLSTVANLLKLpANKLVADLSPTERKLLSIGVEL---VTKPSLLLFLDEPTSGLDAEAALTIVQFLKKLSQQGQAILCTIHQPSK 925
                 8888888888876423334457999999999999885...579***************************************988755 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   8.8e-07    0.0011      18     103 ..     760     843 ..     748     873 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 8.8e-07
      AAA_23  18 skgltlItGpNGaGKTTildAikl.aLygetprlsrksgr.gfeksdveiesegkvkayveltfenkdgrytrsiererelskkkgkt 103
                 s+glt++ G+ GaGKTT+l+ +   +++g ++++   +g+   + + ++ + +  +++ v+l++ + ++    s+e +++l+ +  k 
  CCD26302.1 760 SSGLTALMGESGAGKTTLLNVLSQrVTTGVVTGELLIDGNpLTNIDAFRRSIGFVQQQDVHLELLTVKE----SLEISCNLRGDGDKA 843
                 89********************97578898877777665534444444443333333336666655555....466666665555554 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.3   5.2e-06    0.0067      25     163 ..     762     911 ..     750     918 .. 0.58

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.2e-06
      AAA_16  25 elvllsGesGvGKsslvrellralekdggif....lrgkcdqlesaipysalaqalareellrqlldeaesaeleawrekleealaavpelagaea... 116
                 +l+ l GesG GK++l++ l +++++  +++    + g+   +         ++a+ r + +  + +++   el   +e le + +    l+g++    
  CCD26302.1 762 GLTALMGESGAGKTTLLNVLSQRVTTG-VVTgellIDGNPLTN---------IDAF-R-RSIGFVQQQDVHLELLTVKESLEISCN----LRGDGDkay 844
                 6889*****************988876.444443344444444.........6666.4.777777777677777777776666666....555555223 PP

      AAA_16 117 .....srllellkrllallsrder............p.lvlvlDdlq..wadeaslqllaaLlrlle 163
                      + l    ++l+a ls++er            p l+l+lD+       ea l++ ++L +l++
  CCD26302.1 845 lstvaNLLKLPANKLVADLSPTERkllsigvelvtkPsLLLFLDEPTsgLDAEAALTIVQFLKKLSQ 911
                 3344322222223333333333336666666677665588888865533333344444555555555 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.2e-05     0.015      27      61 ..     756     789 ..     744     801 .. 0.88
   2 ?   -3.9   0.0       6.5   8.3e+03     167     192 ..     901     926 ..     895     926 .. 0.81

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.2e-05
      AAA_25  27 kgllpagelallaGapgtGKttlaldlalavatGk 61 
                  g++   +l++l+G +g+GKttl+  l+  v+tG 
  CCD26302.1 756 SGFI-SSGLTALMGESGAGKTTLLNVLSQRVTTGV 789
                 5776.699************************997 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 6.5
      AAA_25 167 alvealeriarrtgaavllvhHvgKe 192
                  +v+ l++++++ +a+++ +h+++K+
  CCD26302.1 901 TIVQFLKKLSQQGQAILCTIHQPSKS 926
                 5778899999999999*****99995 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.2   5.5e-05     0.071       6      38 ..     762     815 ..     759     923 .. 0.59

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 5.5e-05
      AAA_22   6 gilvvtGesGtGKTtllrrlleqldeeakaee.....................e 38 
                 g+++++GesG+GKTtll+ l ++ +      e                     +
  CCD26302.1 762 GLTALMGESGAGKTTLLNVLSQRVTTGVVTGEllidgnpltnidafrrsigfvQ 815
                 7899*************9998887432222225555555555555555555550 PP

>> ABC2_membrane_3  ABC-2 family transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   6.2       1.8   2.3e+03     249     298 ..     380     431 ..     368     437 .. 0.75
   2 ?    9.3  30.8   0.00043      0.55     167     314 ..     413     562 ..     410     634 .. 0.80
   3 ?   10.9  15.2   0.00014      0.18     218     325 ..    1153    1272 ..    1047    1346 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.8
  ABC2_membrane_3 249 glayialgyllsslf.knsetaqilifivilllsgffgglfp.ledlpsalk 298
                      +++++ ++++++slf   ++t+++  +  +l+++++++++f+ l d+ps+++
       CCD26302.1 380 FISVVIQSLVIGSLFyEVPKTTIGSFSRGSLTFFAILFFTFLaLADMPSTFQ 431
                      5778888888888874577888888788888788888888877888888776 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00043
  ABC2_membrane_3 167 iliilifitasfiavsiveEkesrikelqlvsgvsplqywlskilgdflvyllqlllilll..afglgipfg..nlglllllfllfglayialg 256
                      ++i+++++ a+  + s  + ++  +k+ ql       + + s i  +++++ll++++ ++l  + +  ++++   ++++ll++ ++ +++++l+
       CCD26302.1 413 FAILFFTFLALADMPSTFQRNSVIVKHTQLHFYYGWVETLASTIYDYMFKFLLVVIFSIILyfLAH--LQYDaaRFFIFLLFLSFYNFCMVSLF 504
                      555555555555565666666666677776666666677777888899999999999998644666..5555549999999999999******* PP

  ABC2_membrane_3 257 yllsslfknsetaqilifivilllsgffgglfp..ledlpsalkwifsiiPffapglgll 314
                       l   l+ + + a++l++i++l   ++++++++  led++ ++ wi++++P    ++++l
       CCD26302.1 505 NLTALLSPTLAFANLLAGILLL--AIAMYASYVihLEDMHPWFVWIAYLNPAMFAMEAIL 562
                      **************99999877..55555555558*****************99998886 PP

  == domain 3  score: 10.9 bits;  conditional E-value: 0.00014
  ABC2_membrane_3  218 llqlllilllafglgipfg.nlglll.llfllfglayialgyllsslfknsetaqilifivilllsgffgglfpledlpsalkwifsiiPff 307 
                        + ++l++++++g  ++ + ++  ++ ++++lf+  y+++g++l + + +  ta +++ ++ +++  f+g++ p + + +++k   ++ P +
       CCD26302.1 1153 STLFFLCCYFCCG--FDNSpHIAGVFyFNYILFSAYYLTFGLWLLYSSPDLQTAAVFVAFFYSFTASFCGVMQPYSLFVGFWKFMYRVSPYT 1242
                       4556777889***..888888888888********************99999998888888887999999999999999************* PP

  ABC2_membrane_3  308 apglgllrlitgdplwe............i 325 
                       ++++ +++l+  d +++            +
       CCD26302.1 1243 YFIDTFTSLLLHDRPVNcgvsemvpgqplM 1272
                       ********9965534444444444445551 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.2   9.4e-05      0.12      22      39 ..     761     778 ..     752     785 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 9.4e-05
      AAA_29  22 kgatlltGpsGsGKSTll 39 
                 +g t l+G+sG+GK+Tll
  CCD26302.1 761 SGLTALMGESGAGKTTLL 778
                 6799*************9 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00015      0.19       3      66 ..     766     826 ..     765     869 .. 0.74

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00015
      AAA_18   3 ltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpealdeskrldedkldklldalee 66 
                 l+G +G+GKttl + Ls+r   gv+ ++++ ++++l+  d++  ++s  +++++ d++l++l  
  CCD26302.1 766 LMGESGAGKTTLLNVLSQRVTTGVVTGELLIDGNPLTNIDAF--RRSIGFVQQQ-DVHLELLTV 826
                 7899***************655*************9999999..6655555554.555555544 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       3.9   5.1e+03      25      48 ..     217     253 ..     211     289 .. 0.57
   2 ?    9.9   0.2   0.00057      0.73       3      22 ..     765     784 ..     763     794 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3.9
                 EESSSTTSSSSEEEEEEEETTEE.............E CS
    MMR_HSR1  25 ivsdkpgtTrdinegrvklkgke.............i 48 
                 i ++++ +Tr in+ +++   ++              
  CCD26302.1 217 ILNRMARATRSINFVKISQASDKivekfdkilmltdS 253
                 5566777888888888773322234444444444440 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00057
                 EEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   3 aivGrpNvGKStLinaltge 22 
                 a++G + +GK+tL+n l+++
  CCD26302.1 765 ALMGESGAGKTTLLNVLSQR 784
                 89***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.98u 0.31s 00:00:01.29 Elapsed: 00:00:00.48
# Mc/sec: 8777.09
//
Query:       CCD26303.1  [L=259]
Description: hypothetical protein NDAI_0H01290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.6e-37  125.2   2.4    1.9e-36  124.1   2.4    1.6  1  SRP1_TIP1        Seripauperin and TIP1 family
  ------ inclusion threshold ------
      0.035   13.7   0.3      0.045   13.3   0.3    1.1  1  DUF1189          Protein of unknown function (DUF1189)
       0.12   11.6  36.0       0.17   11.1  36.0    1.2  1  SOG2             RAM signalling pathway protein
       0.66    8.7   3.8       0.77    8.5   3.8    1.3  1  SAPS             SIT4 phosphatase-associated protein
       0.69    8.8  26.4       0.76    8.7  26.4    1.3  1  CytochromB561_N  Cytochrome B561, N terminal
        2.7    7.4  19.3        3.3    7.1  19.3    1.1  1  FAM196           FAM196 family
        7.3    6.5  13.7          9    6.2  13.7    1.1  1  TFIIA            Transcription factor IIA, alpha/beta subunit


Domain annotation for each model (and alignments):
>> SRP1_TIP1  Seripauperin and TIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.1   2.4   7.3e-40   1.9e-36       1      98 [.      14     111 ..      14     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 124.1 bits;  conditional E-value: 7.3e-40
   SRP1_TIP1   1 aavaaaqteaevaelevllnDvksnlkeYlslakansgfslPsgvlsvyaalatatddsYttllseidfaevssmitglPWYssRLepaiesalaseg 98 
                 aa+a+aqt +evae++++l Dv+++l+eY+sla++n++f++Psgvl+vy++l+t+td+ Yttl+s+i+fa+v++++ +lPWY++RLep i+s++++++
  CCD26303.1  14 AAIASAQTGYEVAEFNAILVDVQAHLQEYMSLAMNNPDFTIPSGVLEVYEQLTTYTDETYTTLFSAINFAQVTTIMEQLPWYTTRLEPIISSYMEAHS 111
                 589******************************************************************************************99876 PP

>> DUF1189  Protein of unknown function (DUF1189)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   1.8e-05     0.045      22      89 ..       3      75 ..       1      96 [. 0.85

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.8e-05
     DUF1189 22 igkailYlllLslilalpisiiifyefnskinqleeliee......eipdFtiedGelqieekepiiiqedgit 89
                ++k+ + l+ L +i++  + + +++ fn+++ ++++ ++e      + pdFti +G+l++ e+ +++ +e+++t
  CCD26303.1  3 VTKTTILLASLAAIASAQTGYEVAE-FNAILVDVQAHLQEymslamNNPDFTIPSGVLEVYEQLTTYTDETYTT 75
                6788888999999999999999888.************************************966666665555 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1  36.0   6.5e-05      0.17     204     358 ..      64     233 ..      12     246 .. 0.43

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 6.5e-05
        SOG2 204 ssvtytartRhagsfsaqdveqGaalt...........plrsdqipfnl..................srsrrssssgnsaspaangaqsetsersasss 273
                 + +tyt +   +++fsa + +q + +            p+ s      +                  s s ++s s++ as++a +++s++s +sasss
  CCD26303.1  64 QLTTYTDE-TYTTLFSAINFAQVTTIMeqlpwyttrlePIIS------SymeahsitetdgpasaaaS-SAAASASSAAASSSAAASSSSASASSASSS 154
                 45566666.446777777777766665555433222223333......25555544666665544421.111122222222222222233333333332 PP

        SOG2 274 g.vqssasstPlgegstsppgalsrqslsttgst.stltsssksrsssrsnt.nasastprslattpappasaesfastlt.asrintl 358
                 + ++ss+      ++s+s+ +a+s++s+++++s+ s+ +sss s+s s++++ ++++s+++s+a++++++as+++    ++ +s+++++
  CCD26303.1 155 AaASSSS-----AAASSSS-SASSSSSAASSSSSaSSASSSSASSS-SAASSsSSASSASSSSASSSSASASSTA---ASNgTSSSSAN 233
                 2111111.....1122222.22222222222222022222222222.2222112223333333333332222222...22223344433 PP

>> SAPS  SIT4 phosphatase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.8    0.0003      0.77     272     321 ..     138     202 ..      32     246 .. 0.52

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0003
        SAPS 272 s...............deaskeesaesedltdkdedvsleesksakd.............................enkesdesesdtaeesse 321
                 s               +                             +                             ++++s++s+s+ a+ ss+
  CCD26303.1 138 SaaassssasassassS-----------------------------AaassssaaasssssasssssaasssssasSASSSSASSSSAASSSSS 202
                 02222222222111111.............................011111111222211111111111111111111111111111111111 PP

>> CytochromB561_N  Cytochrome B561, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  26.4    0.0003      0.76     127     235 ..     116     224 ..       3     253 .. 0.55

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0003
  CytochromB561_N 127 kkpPkskss.lqasssevlvplhqsvsssssesrkgsdkssagsgkkleSistsskssaspsvylrsslvdlsssplssnlsaensvqsSeeid 219
                       +p ++  s   as+s   +  +  +ssss +s  ++++s a+s++++ + s+ss+ss s+   + ss  ++sss +ss ++a+ s ++S++ +
       CCD26303.1 116 DGPASAAASsAAASASSAAASSSAAASSSS-ASASSASSSAAASSSSAAASSSSSASSSSSAASSSSSASSASSSSASSSSAASSSSSASSASS 208
                      333333333333333333322222222222.222222222222222222222222222222122222222222222222222222222222222 PP

  CytochromB561_N 220 saksspwsrkraksak 235
                      s  ss +++ +++ a 
       CCD26303.1 209 SSASSSSASASSTAAS 224
                      2222222222222222 PP

>> FAM196  FAM196 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  19.3    0.0013       3.3     243     343 ..     124     225 ..      67     246 .. 0.34

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0013
      FAM196 243 kdesnskekkklsktekatvv.lpaskskstepvllnslaqveelklasdspavsedkkkavslngsqastksaaacseqtq.Crsteakestlqkssl 339
                 + +++s +++  s++  a+   ++as+++s +++++ s a+++++++as+s+++ + + +a s ++s+as++saa+ s+ +    s+ a++s+ + ss+
  CCD26303.1 124 SSAAASASSAAASSSAAASSSsASASSASS-SAAASSSSAAASSSSSASSSSSAASSSSSASSASSSSASSSSAASSSSSASsASSSSASSSSASASST 221
                 111111111111111111111011111111.11111111111111111111111111111111111111111111111111101111111111111111 PP

      FAM196 340 pree 343
                  +++
  CCD26303.1 222 AASN 225
                 1111 PP

>> TFIIA  Transcription factor IIA, alpha/beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2  13.7    0.0035         9      87     259 ..      46     226 ..      11     245 .. 0.28

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0035
       TFIIA  87 sqslpslvipagksvqslta..nssaataatfslpakleppvqipagvtlqtasg........qlykvnv........qasgaqqiaaqplqqvvqq.. 165
                 ++++p  +ip+g  ++ +++    + +t++t+   ++  ++  i+ ++   t++         +                   +++aa+ ++ + ++  
  CCD26303.1  46 AMNNPDFTIPSG-VLEVYEQltTYTDETYTTLFSAINFAQVTTIMEQLPWYTTRLepiissymE-----AhsitetdgP----ASAAASSAAASASSaa 134
                 444555555555.222222222222233333333333333222222222222222322322211.....0223322221....2222222222211111 PP

       TFIIA 166 sqgsaaqssvaalqaq.sqqaqalaepqqqlekqqqqqqqqqqqqqqqqvqqqqqeesqqaqqasqe.qvag.sqvessqtdgaedaleeespv..leg 259
                 +++saa+ss +a++++ s++a+a +  + +++ + ++  ++ +     ++++++ ++s++ ++as + + ++ s+++s++ ++a+++++++s+    +g
  CCD26303.1 135 ASSSAAASSSSASASSaSSSAAASSS-SAAAS-SSSSASSSSS-----AASSSSSASSASSSSASSSsAASSsSSASSASSSSASSSSASASSTaaSNG 226
                 12222222222222221111111111.11111.1111111111.....111111111111111100001111011111111111111111111111222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2005  (0.11183); expected 358.6 (0.02)
Passed bias filter:                      723  (0.0403257); expected 358.6 (0.02)
Passed Vit filter:                       346  (0.0192983); expected 17.9 (0.001)
Passed Fwd filter:                       130  (0.00725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.52u 0.40s 00:00:01.92 Elapsed: 00:00:00.56
# Mc/sec: 1388.04
//
Query:       CCD26304.1  [L=233]
Description: hypothetical protein NDAI_0H01300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-36  124.2   2.9    3.3e-36  123.3   2.9    1.5  1  SRP1_TIP1  Seripauperin and TIP1 family
  ------ inclusion threshold ------
       0.18   11.0  22.9       0.25   10.5  22.9    1.2  1  SOG2       RAM signalling pathway protein
       0.24   11.5   7.1       0.41   10.8   7.1    1.3  1  DDHD       DDHD domain
        1.6    8.3   4.4        1.9    8.0   4.4    1.2  1  DUF572     Family of unknown function (DUF572)
          2    7.5   7.8        2.4    7.2   7.8    1.3  1  Tmemb_cc2  Predicted transmembrane and coiled-coil 2 protein
        3.8    7.7   5.1        5.3    7.3   5.1    1.2  1  GEMIN8     Gemini of Cajal bodies-associated protein 8
        4.7    7.0  16.9        5.7    6.7  16.9    1.1  1  SPX        SPX domain
        4.8    4.2  10.5        4.9    4.1  10.5    1.0  1  GREB1      Gene regulated by oestrogen in breast cancer
        6.1    7.2   6.5        8.1    6.8   6.5    1.3  1  GCOM2      Putative GRINL1B complex locus protein 2


Domain annotation for each model (and alignments):
>> SRP1_TIP1  Seripauperin and TIP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   2.9   1.7e-39   3.3e-36       1      98 [.      14     111 ..      14     112 .. 0.98

  Alignments for each domain:
  == domain 1  score: 123.3 bits;  conditional E-value: 1.7e-39
   SRP1_TIP1   1 aavaaaqteaevaelevllnDvksnlkeYlslakansgfslPsgvlsvyaalatatddsYttllseidfaevssmitglPWYssRLepaiesalaseg 98 
                 aa+a+aq+ +evae++++l Dv+++l+eY+sla++n++f++Psgvl+vy++l+t+td+ Yttl+s+i+fa+v++++ ++PWYssRL p i+s++++++
  CCD26304.1  14 AAIASAQSGYEVAEFNAILVDVQAHLQEYMSLAMNNADFTIPSGVLEVYEQLTTYTDETYTTLFSAINFAQVTTVMEQVPWYSSRLIPIISSYMEAHS 111
                 589******************************************************************************************99876 PP

>> SOG2  RAM signalling pathway protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  22.9   0.00012      0.25     202     334 ..      62     206 ..      10     224 .. 0.45

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
        SOG2 202 rassvtytartRhagsfsaqdveqGaalt...plrsd.qipfnl......srsrrssssgnsaspaangaqsetsersasssg.vqssasstPlgegst 289
                  ++ +tyt +   +++fsa + +q + +    p  s+  ip  +      s +++++ s+  a++aa  + +++s  ++sssg v+ss+s         
  CCD26304.1  62 YEQLTTYTDE-TYTTLFSAINFAQVTTVMeqvPWYSSrLIPIISsymeahSITETDGASSVVATSAAASSIVSSSAAASSSSGaVSSSSS--------- 150
                 3466677877.4589999999888776665886666667776434555443333333333333333333333333333333332222222......... PP

        SOG2 290 sppgalsrqslsttgst...............stltsssksrsssrsntnasastprsla 334
                     a+ ++sls+++++               s+  sss+s+s+s+s+t as+ t++s+a
  CCD26304.1 151 ----AADSSSLSASSASsssaasssssaasssSSAASSSSSSSASASSTAASNGTSSSSA 206
                 ....22222222222210000000000000001111111112222222222222222222 PP

>> DDHD  DDHD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   7.1    0.0002      0.41      60     169 ..      98     198 ..      83     223 .. 0.42

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.0002
        DDHD  60 RlEPLlepkfsklkPvsiprykrrkllh..lelkesltsigaalkqkvsglvsslsallnrslelaeeesaslaessksherasesskasqeskaaess 156
                 Rl P++++ ++   + si ++ + + +   + + +s+ s +aa +++ sg       ++++s + a+++s s++++s+s++++s+ss as++s+aa+ss
  CCD26304.1  98 RLIPIISSYME---AHSITETDGASSVVatSAAASSIVSSSAAASSS-SG-------AVSSSSSAADSSSLSASSASSSSAASSSSSAASSSSSAASSS 185
                 55555555443...445555555443322122222222222222222.22.......333333333333333333333333333333333333333333 PP

        DDHD 157 tasssaksskaee 169
                 ++ss+++ss+a++
  CCD26304.1 186 SSSSASASSTAAS 198
                 3333222222222 PP

>> DUF572  Family of unknown function (DUF572)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.4   0.00098       1.9     242     311 ..     131     200 ..      48     215 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00098
      DUF572 242 esskekkkeslekklskltkkkadsslvvrKkkkeeekskeskekteeeskeseeeskkeeetsaee.eke 311
                   s++++++s + ++s++ +++adss +   ++++++++++s+++++++s+ ++++s+++++ s+++ ++ 
  CCD26304.1 131 IVSSSAAASSSSGAVSSS-SSAADSSSLSASSASSSSAASSSSSAASSSSSAASSSSSSSASASSTAaSNG 200
                 222233333333333333.3333333333333333222222222222222222222222222222221222 PP

>> Tmemb_cc2  Predicted transmembrane and coiled-coil 2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   7.8    0.0012       2.4     144     207 ..     142     198 ..      22     218 .. 0.54

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0012
   Tmemb_cc2 144 ADninslksseeeseeesgskslssstallvskskytsddesssssvesssadsnsnseestas 207
                 +  ++s+       +++++s+sls s+a+++s ++ +s   sssss +sss++s+++ ++++as
  CCD26304.1 142 SGAVSSS-------SSAADSSSLSASSASSSSAASSSSSAASSSSSAASSSSSSSASASSTAAS 198
                 1111111.......12222222222222222222222222222222222222222222222222 PP

>> GEMIN8  Gemini of Cajal bodies-associated protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   5.1    0.0027       5.3      15     107 ..     106     193 ..      93     215 .. 0.30

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0027
      GEMIN8  15 yeqamawmrrhqk....ayrkalesyysspwyleeaelpsssyadeaseeqsrsdhhlasqdshskssekrrsgqsskdsskkqkseresvdqsivs 107
                 y +a ++ +        a+++a +s++ss+   ++++          s+++s +d+ + s +s+s+ss  ++s + +++ss+  +s+++s    + s
  CCD26304.1 106 YMEAHSITETDGAssvvATSAAASSIVSSSAAASSSS-------GAVSSSSSAADSSSLSASSASSSSAASSSSSAASSSSSAASSSSSSSA--SAS 193
                 3333333333322222255555555555433333331.......111222222222222222222222222221111111111111111111..111 PP

>> SPX  SPX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  16.9    0.0029       5.7      66     143 ..     126     198 ..      86     218 .. 0.36

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0029
         SPX  66 pstsaaadesgnsaadasssepkdeaeslprrspl.srssrssssygglvssppsansssssddssesnpadsssssss 143
                 ++ s+  ++s+++++ + + ++++   s  ++s+l ++s +sss++++++s  +s++s++ss++ss+++    ss+  s
  CCD26304.1 126 AAASSIVSSSAAASSSSGAVSSSS---SAADSSSLsASSASSSSAASSSSSAASSSSSAASSSSSSSAS---ASSTAAS 198
                 222222222221111111111111...111111110111111111111111111111111111111111...1111111 PP

>> GREB1  Gene regulated by oestrogen in breast cancer
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  10.5    0.0025       4.9    1165    1246 ..     112     196 ..      25     217 .. 0.46

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0025
       GREB1 1165 sakselseasaaaasaseeakspkasvtseeeeseeskekekeslsketesqlsleaseqkealda...kasskssssssssssa 1246
                   +++   ++  a+++a ++  s++a+++s++ ++++s +   +s  ++++++ s+ as++++a+++    ass+ssss+s ss+a
  CCD26304.1  112 ITETDGASSVVATSAAASSIVSSSAAASSSSGAVSSSSSAADSSSLSASSASSSSAASSSSSAASSsssAASSSSSSSASASSTA 196 
                  2222222211222222222222222222222222222221111111111111111111111111110001111111111111111 PP

>> GCOM2  Putative GRINL1B complex locus protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.5     0.004       8.1      79     156 ..     130     203 ..      61     214 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.004
       GCOM2  79 ldlssgtlhekkvkvlkpsktlstqqdlaeieekgkeeaqesetkvnkcpass.eaaasspseaseqlaqtlvskqaed 156
                  ++ss+   +++   +++s+++   + l+     ++  a++s     ++ ass ++aass+s +s + ++t++s+ ++ 
  CCD26304.1 130 SIVSSSAAASSSSGAVSSSSSAADSSSLSASSASSSSAASSS-----SSAASSsSSAASSSSSSSASASSTAASNGTSS 203
                 233333333333333333333333333333333333322222.....22222224444444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1775  (0.0990016); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                       167  (0.00931452); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.91u 0.34s 00:00:01.25 Elapsed: 00:00:00.48
# Mc/sec: 1453.35
//
Query:       CCD26305.1  [L=261]
Description: hypothetical protein NDAI_0H01310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      8e-27   93.6   0.0    1.5e-26   92.7   0.0    1.4  1  AhpC-TSA       AhpC/TSA family
    6.1e-18   64.9   0.0    1.1e-17   64.1   0.0    1.4  1  Redoxin        Redoxin
  ------ inclusion threshold ------
       0.11   11.9   0.7        2.3    7.6   0.1    2.1  2  FPV060         Viral CC-type chemokine
       0.38   10.9   1.9       0.75    9.9   1.9    1.4  1  Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0   3.4e-30   1.5e-26       1     116 [.     111     227 ..     111     233 .. 0.95

  Alignments for each domain:
  == domain 1  score: 92.7 bits;  conditional E-value: 3.4e-30
                 TTSB----EEESTTCEEEECHHH..TTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H.SSEEEE-TTSHHHHH CS
    AhpC-TSA   1 vgdkapdfelknadgetvslsdy..kgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekeslnfpllsDeegkvaka 97 
                 +gd +pd++l n++g+++sl+++   +k++v+f +p++++p+Ct++++ ++++y+e+k +++ v+g+s+d   s+kkf ek+ l+++llsD++++++  
  CCD26305.1 111 IGDDIPDITLSNQNGKEISLKEIakTNKIIVIFAFPRASTPGCTRQACGFRDNYDELK-KNAIVFGLSADAISSQKKFEEKQHLPYDLLSDPKRQLIGL 208
                 89*********************7555*******************************.7999************************************ PP

                 TT-EETTTTECSCEEEEE- CS
    AhpC-TSA  98 ygvlkeekglalratfvid 116
                 +g+ k+++ +++r+ +++ 
  CCD26305.1 209 LGAKKTPQSGTVRSYWIFV 227
                 *************999975 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   2.5e-21   1.1e-17       3     135 ..     112     241 ..     110     251 .. 0.80

  Alignments for each domain:
  == domain 1  score: 64.1 bits;  conditional E-value: 2.5e-21
                 TSBB---ECCEETTCEEEEEHHH.HTTSE.EEEEEESTTT-HHHHHTHH.HHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHHTT-TSEEEE-TTSHHH CS
     Redoxin   3 gdkaPdftlplaatdgnsvslse.fkgkk.vvvnfvpgafcPtCsaehp.yleklaellkekgvdvvavvadndafvkefwgkeglkfpvlsDgsaaft 98 
                 gd +Pd+tl   +++g+++sl+e  k +k +v++++p+a +P C+++++ + ++++el  +k+  v++++ad  + +k+f +k++l++ +lsD++ ++ 
  CCD26305.1 112 GDDIPDITL--SNQNGKEISLKEiAKTNKiIVIFAFPRASTPGCTRQACgFRDNYDEL--KKNAIVFGLSADAISSQKKFEEKQHLPYDLLSDPKRQLI 206
                 899*****8..56**********9666665999****************888888888..7778888******************************** PP

                 HHTT-TTEEE.GGGEEE-EEEEEEETT.EEEEEEESSS CS
     Redoxin  99 kalGlrleedaseglrtpryavidedg.kvvylevepe 135
                   lG++  +  ++g   ++y +++e +  ++ ++v pe
  CCD26305.1 207 GLLGAK--KTPQSG-TVRSYWIFVEGKlSIKRIKVSPE 241
                 ****55..555565.56666666654444444444444 PP

>> FPV060  Viral CC-type chemokine
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1    0.0095        43     107     177 ..      76     143 ..      66     150 .. 0.81
   2 ?    7.6   0.1   0.00051       2.3      91     118 ..     146     173 ..     137     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0095
      FPV060 107 envdslrannplgccndytkvsssslneddvidcrksdascedrgyllvrnngsavcipenskndnigfyf 177
                 ++vd +  ++   +  d  +vs  s n+d +i+    d         l  +ng  + + e +k ++i + f
  CCD26305.1  76 DKVDGIEHEEVKKVKFDEQQVSDKSANNDSIIELEIGDDIP---DITLSNQNGKEISLKEIAKTNKIIVIF 143
                 5677777777788888999**************99888654...356888899999999999988886665 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.00051
      FPV060  91 pplpdrgctgeccdlrenvdslrannpl 118
                 p     gct ++c +r+n d l+ n  +
  CCD26305.1 146 PRASTPGCTRQACGFRDNYDELKKNAIV 173
                 666678*****************99754 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.9   0.00017      0.75      77     143 ..      27      93 ..      17     111 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00017
  Lipase_GDSL_3  77 rerleyfvktlrkahPktpillvedlst.tkglvdeklekeveaknkaleelvkklkkekekklylis 143
                    + + +++ ++ +k++P + +l++e+  + + g+++ +  k++++ ++++e++v  +++e++kk+ + +
     CCD26305.1  27 E-KRKKIATQKAKKSPSKKLLVSEKKVIkNAGSINGRETKKETKPRSVVEDKVDGIEHEEVKKVKFDE 93 
                    3.445566677899********9987651568999999999********************9997754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1315  (0.0733449); expected 358.6 (0.02)
Passed bias filter:                      466  (0.0259914); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1943.11
//
Query:       CCD26306.1  [L=230]
Description: hypothetical protein NDAI_0H01320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-36  124.6   0.0    3.7e-36  124.2   0.0    1.1  1  CRAL_TRIO    CRAL/TRIO domain
    0.00088   19.4   0.0     0.0012   19.0   0.0    1.2  1  CRAL_TRIO_2  Divergent CRAL/TRIO domain
     0.0094   16.6   0.5        3.5    8.4   0.0    2.3  2  X8           X8 domain
  ------ inclusion threshold ------
      0.073   13.3   0.0       0.26   11.5   0.1    1.8  2  DUF1769      Protein of unknown function (DUF1769)


Domain annotation for each model (and alignments):
>> CRAL_TRIO  CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.0   8.3e-40   3.7e-36       3     159 .]      29     193 ..      28     193 .. 0.94

  Alignments for each domain:
  == domain 1  score: 124.2 bits;  conditional E-value: 8.3e-40
   CRAL_TRIO   3 ileggkvgihgrDkegrpvlylrlgrfdpk...kls.leelvralvlvlerllkelee......dgqvegvtvviDlkglslskmlwkp.isllkkilk 90 
                 +++++++++h++Dk+grp+++ +lg ++ +   k++ +e++++ lv+ +e+++++  +      ++ +e+ + v+Dlkg+s+s     + +s++++ + 
  CCD26306.1  29 VAKYYPQYYHKTDKDGRPCYFEELGAVNLTemyKITtEERMLKNLVWEYESVVRYRLPacsraaGALIETSCTVMDLKGISISSAY--SvLSYVREASF 125
                 5789************************9999*888899***************877788889999***************88777..44********* PP

   CRAL_TRIO  91 ilqdnyperlgkilivnaPklfkfafklvkpfldektreKikfvspsnteatlekyidpeqlpkelGGt 159
                 i q++yper+gk++++naP+ f++af+l+kpfld++t +Ki+++++s   ++l k+i++e+lp ++GG+
  CCD26306.1 126 ISQNYYPERMGKFYLINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQ-KELLKQIPAENLPTKFGGK 193
                 ********************************************87775.9*****************6 PP

>> CRAL_TRIO_2  Divergent CRAL/TRIO domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.7e-07    0.0012      42     131 ..     102     192 ..      65     199 .. 0.83

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2.7e-07
  CRAL_TRIO_2  42 Vyfhtglss.enkpslswlkkvystlprrykknlkklyivhpstfvktllktvlsafvsskfrkkvey..vsrleeLarkidrtqllkslPeg 131
                  V++ +g+s      +ls+++ +  + ++ y+++  k+y++++ + + t++  ++++f+ +    k+     s+ +eL + i  ++l+++++ g
   CCD26306.1 102 VMDLKGISIsSAYSVLSYVREASFISQNYYPERMGKFYLINAPFGFSTAF-RLFKPFLDPVTVSKIFIlgSSYQKELLKQIPAENLPTKFG-G 192
                  55555555423456789999999999999*********************.*********997774443357889***************9.4 PP

>> X8  X8 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.1    0.0039        17      57      74 ..      35      52 ..      26      54 .. 0.90
   2 !    8.4   0.0   0.00077       3.5      13      61 ..      91     133 ..      86     137 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0039
                HHHHHHTSSGGG--S-SS CS
          X8 57 sYYqkqgkkssaCdFsgs 74
                +YY+k++k+ + C+F++ 
  CCD26306.1 35 QYYHKTDKDGRPCYFEEL 52
                8**************986 PP

  == domain 2  score: 8.4 bits;  conditional E-value: 0.00077
                 HHHHHHHHHTTTSSSSTT---SS.....S-SS--TTHHHHHHHHHHHHH CS
          X8  13 elgdlldyaCgeadCtaiqangttGkYGcyspcsvkqklsyalnsYYqk 61 
                 + g+l+++ C+  d ++i+  ++      ys+ s   ++s++ ++YY +
  CCD26306.1  91 AAGALIETSCTVMDLKGISISSA------YSVLSYVREASFISQNYYPE 133
                 568999*************9998......999999************76 PP

>> DUF1769  Protein of unknown function (DUF1769)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.4   1.1e+04      10      25 ..      77      92 ..      76      94 .. 0.74
   2 ?   11.5   0.1   5.7e-05      0.26      18      35 ..     143     161 ..     139     165 .. 0.88

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.4
     DUF1769 10 fdrpirdrlPpgfsaa 25
                ++  +r rlP  ++aa
  CCD26306.1 77 YESVVRYRLPACSRAA 92
                5677899999887554 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 5.7e-05
     DUF1769  18 lPpgfsaalkfak.fiDpg 35 
                  P gfs+a++++k f+Dp 
  CCD26306.1 143 APFGFSTAFRLFKpFLDPV 161
                 6****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       317  (0.0176809); expected 358.6 (0.02)
Passed bias filter:                      281  (0.0156729); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 1767.52
//
Query:       CCD26307.1  [L=793]
Description: hypothetical protein NDAI_0H01330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      8e-11   42.5   0.0    2.3e-10   41.0   0.0    1.8  1  AAA           ATPase family associated with various cellular 
    4.6e-07   29.9   0.1    1.2e-05   25.4   0.0    2.7  2  Rad17         Rad17 P-loop domain
    7.3e-05   22.6   0.0    0.00018   21.3   0.0    1.6  1  RuvB_N        Holliday junction DNA helicase RuvB P-loop doma
    0.00017   22.0   0.0    0.00042   20.7   0.0    1.6  1  AAA_16        AAA ATPase domain
    0.00048   20.7   0.5      0.052   14.1   0.0    3.2  3  AAA_18        AAA domain
     0.0011   18.9   0.2       0.01   15.9   0.0    2.7  2  AAA_14        AAA domain
     0.0015   18.8   0.1      0.013   15.8   0.1    2.4  1  AAA_22        AAA domain
     0.0088   16.2   0.0       0.02   15.1   0.0    1.6  1  AAA_33        AAA domain
  ------ inclusion threshold ------
      0.027   14.8   0.0       0.11   12.9   0.0    2.1  1  RNA_helicase  RNA helicase
      0.045   14.1   0.0       0.16   12.4   0.0    2.0  1  AAA_assoc_2   AAA C-terminal domain
      0.072   12.5   0.1       0.15   11.5   0.1    1.5  1  IPT           Isopentenyl transferase
       0.11   12.3   0.2        8.2    6.2   0.0    3.2  3  DEAD          DEAD/DEAH box helicase
       0.14   12.2   0.0       0.49   10.4   0.0    1.9  2  AAA_5         AAA domain (dynein-related subfamily)
       0.19   11.4   0.3        1.6    8.5   0.0    2.6  2  HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor
       0.63   10.5   4.2          1    9.8   0.0    2.9  2  AAA_17        AAA domain
        7.9    6.7   9.7        1.3    9.3   0.1    3.1  3  Hydin_ADK     Hydin Adenylate kinase-like domain


Domain annotation for each model (and alignments):
>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   2.1e-13   2.3e-10       1      74 [.     223     294 ..     223     352 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 2.1e-13
                 EEEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH CS
         AAA   1 vllyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr 74 
                 +l++GppG+GKT++a+ +ak++g+++ ei++s+ +      + k ++ lf++  + + p++l+ DEid  ++s 
  CCD26307.1 223 LLIHGPPGIGKTSVAHVLAKQAGFTVSEINASDER-AGPLVRDKIMNTLFNHTFNDK-PVCLVADEIDGSIESG 294
                 699********************************.777888899999999998887.**********988877 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.34   3.8e+02       4      23 ..     147     166 ..     144     190 .. 0.75
   2 !   25.4   0.0     1e-08   1.2e-05      36      76 ..     211     251 ..     206     285 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.34
       Rad17   4 denelWfekykPekaeelav 23 
                  +  lW+ek++P+   +l  
  CCD26307.1 147 KNETLWVEKWRPKSFLDLVG 166
                 45668*******99888754 PP

  == domain 2  score: 25.4 bits;  conditional E-value: 1e-08
       Rad17  36 kadvLesrkkriLLisGPsGCgkstvvkvLskelgiklrew 76 
                 + d Le+  k+iLLi GP+G gk+ v +vL+k+ g+ + e 
  CCD26307.1 211 EVDPLERPMKKILLIHGPPGIGKTSVAHVLAKQAGFTVSEI 251
                 567899*****************************999874 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.6e-07   0.00018      10      63 ..     197     250 ..     191     316 .. 0.81

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 1.6e-07
      RuvB_N  10 igqekvkeklkifieaakkreealdhvllyGpPGlGkttlakiiakelgvklki 63 
                  gq++ +++ +i ie     +     +l++GpPG+Gkt++a+++ak+ g ++  
  CCD26307.1 197 FGQDTSNNTPEINIEVDPLERPMKKILLIHGPPGIGKTSVAHVLAKQAGFTVSE 250
                 678888888888888776666666667889****************99887654 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   3.7e-07   0.00042      18      49 ..     214     245 ..     207     324 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.7 bits;  conditional E-value: 3.7e-07
      AAA_16  18 rvrsgrpelvllsGesGvGKsslvrellrale 49 
                 ++ ++   ++l++G++G+GK+s++  l++++ 
  CCD26307.1 214 PLERPMKKILLIHGPPGIGKTSVAHVLAKQAG 245
                 55566669****************99997543 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   4.7e-05     0.052       2      41 ..     224     271 ..     223     300 .. 0.76
   2 ?    3.0   0.0      0.12   1.4e+02      25      59 ..     545     579 ..     524     599 .. 0.79
   3 ?   -3.1   0.3       9.7   1.1e+04      48      62 ..     712     726 ..     691     751 .. 0.48

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 4.7e-05
      AAA_18   2 lltGtpGvGKttlakeLskrlgf........gvnlrdvakenglllev 41 
                 l+ G+pG GKt++a+ L+k  gf         ++ + +++++ + + +
  CCD26307.1 224 LIHGPPGIGKTSVAHVLAKQAGFtvseinasDERAGPLVRDKIMNTLF 271
                 689*****************9888887777755555555555555444 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.12
      AAA_18  25 gvnlrdvakenglllevdpealdeskrldedkldk 59 
                  +n +dva +++l++ + +++ +e++++++    +
  CCD26307.1 545 FQNFGDVANKEDLRIKNVEFENREKQKMNQAIISS 579
                 6899****************888888888776544 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 9.7
      AAA_18  48 eskrldedkldklld 62 
                  +++++++  ++ ++
  CCD26307.1 712 TEEIANKKAKNSEIN 726
                 222222222222222 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   8.9e-06      0.01       2      87 ..     220     303 ..     219     327 .. 0.77
   2 ?   -1.4   0.1         2   2.2e+03      32      84 ..     558     609 ..     544     636 .. 0.67

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.9e-06
      AAA_14   2 rkilvitGaRrvGKTtllkqlikellvkkesilyinldderdkkladpekllelilek.lkeekktylflDEiqev..pewekalkslv 87 
                 +kil+i G+  +GKT +++ l+k+       + +in  der   l   +k+++ ++++ ++ +k  +l+ DEi  +  +++ ++l +++
  CCD26307.1 220 KKILLIHGPPGIGKTSVAHVLAKQAG---FTVSEINASDERAGPLVR-DKIMNTLFNHtFN-DKPVCLVADEIDGSieSGFIRVLIDII 303
                 699*******************9999...8999******99966553.4577777777355.599********8763333555555554 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2
      AAA_14  32 silyinldderdkkladpekllelileklke.ekktylflDEiqevpewekalk 84 
                 +i  +++++ +++k+++   +++ i  ++++ + k + f+D  + v e+  ++ 
  CCD26307.1 558 RIKNVEFENREKQKMNQA--IISSIVHSISTgSPKMLPFIDRRSLVFELLPFID 609
                 566777888777776655..5666665543336677788887666666665555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   1.2e-05     0.013       5      49 ..     220     255 ..     218     316 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlps 49 
                 ++il+++G++G+GKT ++  l++q+         + +v +++++ 
  CCD26307.1 220 KKILLIHGPPGIGKTSVAHVLAKQA---------GFTVSEINASD 255
                 689******************9998.........66666666555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.7e-05      0.02       2      29 ..     223     249 ..     222     331 .. 0.78

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 1.7e-05
      AAA_33   2 vllvGlpGsGKstlaerllkklgavlls 29 
                 +l++G+pG GK+ +a+ l+k+ g+++ s
  CCD26307.1 223 LLIHGPPGIGKTSVAHVLAKQAGFTV-S 249
                 689****************8887443.2 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0    0.0001      0.11       2      55 ..     224     283 ..     223     313 .. 0.60

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.0001
  RNA_helicase   2 wlyGpsgeGKStlakeLakallkkl.....klkkkdsvys.rnpeddfwdgYtgqevvvi 55 
                   +++Gp+g+GK+++a+ Lak+   ++      +++++ ++  + +++ f + +++++v+++
    CCD26307.1 224 LIHGPPGIGKTSVAHVLAKQAGFTVseinaSDERAGPLVRdKIMNTLFNHTFNDKPVCLV 283
                   79****************998844433344333334443423333344455555555544 PP

>> AAA_assoc_2  AAA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   0.00014      0.16       3      43 ..     384     424 ..     382     450 .. 0.76

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
                  X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX CS
  AAA_assoc_2   3 kklkleddalealaeladGDaRkaLnlLElaaeaaeakegk 43 
                  ++l+++ + l  l++la+GD+R+++n L+++ + ++ k+++
   CCD26307.1 384 EHLDISTKELIDLMDLAEGDVRNCINNLQFLSSHSRYKAKQ 424
                  567888888999*****************888877754333 PP

>> IPT  Isopentenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00013      0.15       2      29 ..     221     248 ..     220     253 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
         IPT   2 evylifGatttGKtaeaiklaketgapv 29 
                 ++ li+G+ ++GKt++a  lak+ g+ v
  CCD26307.1 221 KILLIHGPPGIGKTSVAHVLAKQAGFTV 248
                 688**********************998 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.31   3.5e+02      17      35 ..     223     241 ..     214     256 .. 0.84
   2 ?    6.2   0.0    0.0073       8.2     124     157 ..     281     314 ..     262     322 .. 0.84
   3 ?    0.5   0.0       0.4   4.5e+02      42     106 ..     325     392 ..     317     414 .. 0.61

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.31
                 EEEEESTTSSHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
        DEAD  17 vlvaaeTGsGKTlaflipv 35 
                 +l++++ G GKT ++ + +
  CCD26307.1 223 LLIHGPPGIGKTSVAHVLA 241
                 68999*******9987765 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0073
                 EEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 124 flVlDEadrlldqgfsdfinrilnqlpqitcdgk 157
                 +lV DE+d+  ++gf + +  i+n+ +++t + k
  CCD26307.1 281 CLVADEIDGSIESGFIRVLIDIINNDAKATRNLK 314
                 79***********************998888776 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.4
                 S..TTSTS-EEEEEESSHHHHHHHHHHHHHHTTT.STSEEEEEETTSSHHHHHHHHHTTCSEEEEEHH CS
                 x..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  42 t..kgktgpkalivePtreLaeqtlnnlkkfkky.idlrvlliiggvaardqlskldngvdivvgtpg 106
                 t  k++++++ l++ P  + +++ +  + + +k+ +++      ++++ ++ l++++ + ++ ++t +
  CCD26307.1 325 TkgKKNKKKQSLLLRPIIAVCNNLYAPALEKLKPhCEIISFKRPSDKSLQERLETISMKEHLDISTKE 392
                 244788889**************999877666652553333344567777777777655444444443 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00044      0.49       2      30 ..     223     251 ..     222     258 .. 0.83
   2 ?   -2.8   0.0       5.1   5.7e+03      70     122 ..     283     347 ..     260     357 .. 0.59

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00044
                 EEEE--SSSSHHHHHHHGGGGBS--EEEE CS
       AAA_5   2 vlLvGppGtgKselaerlaaalnreveyv 30 
                 +l+ GppG+gK+++a  la+  + +v ++
  CCD26307.1 223 LLIHGPPGIGKTSVAHVLAKQAGFTVSEI 251
                 6899**************99877776665 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 5.1
                 EEESGGG.--HHHHHHHHHHHHSSEEE..-SSSEEE---....................-EEEEEESS CS
       AAA_5  70 vlDEver.aesevlnsLlslleerrllleeggelvkaknddller..............frviatanp 122
                 v DE++  +es  + +L+ +++++   + ++++ +  k   +++r                +ia +n+
  CCD26307.1 283 VADEIDGsIESGFIRVLIDIINNDAKATRNLKFNTTSK---FIQRtkgkknkkkqslllRPIIAVCNN 347
                 55666631346666666666666655544444443332...233333344555555555556666665 PP

>> HrcA_DNA-bdg  Winged helix-turn-helix transcription repressor, HrcA DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.9   2.1e+03       9      39 ..     298     328 ..     293     337 .. 0.82
   2 ?    8.5   0.0    0.0014       1.6      13      50 ..     377     414 ..     368     416 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.9
  HrcA_DNA-bdg   9 ilqaLielyrkkkravKgeeiAevlkrneGt 39 
                   +l  +i+   k +r +K +   + ++r +G 
    CCD26307.1 298 VLIDIINNDAKATRNLKFNTTSKFIQRTKGK 328
                   7778888888889999999999999999986 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0014
  HrcA_DNA-bdg  13 LielyrkkkravKgeeiAevlkrneGtvRNqlqsLkal 50 
                   L ++  k++  + ++e+ ++++  eG vRN ++ L+ l
    CCD26307.1 377 LETISMKEHLDISTKELIDLMDLAEGDVRNCINNLQFL 414
                   556667888999********************999876 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00089         1       2      23 ..     227     248 ..     226     266 .. 0.88
   2 ?   -0.2   1.4       1.1   1.3e+03      29      77 ..     687     738 ..     686     764 .. 0.67

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00089
                 E-TTSSHHHHHHHHHHHHTEEE CS
      AAA_17   2 GgPGsGKgtqceklvekygfth 23 
                 G+PG GK+ ++  l+++ gft+
  CCD26307.1 227 GPPGIGKTSVAHVLAKQAGFTV 248
                 9*******************98 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 1.1
                 HHHHHHHTTTS.HSSHHHHCTSHHHHHHHHHHHHHH.HHHHHH.HSSEEEEE CS
      AAA_17  29 llreeakrggl.akardemrklpleekkelqkeaae.kiaeea.kkkgvlvd 77 
                 ll + +++++  +++ d+++k++ e ++   k+a++ +i++ + k++g  +d
  CCD26307.1 687 LLLAKIEESKVkKRHIDQVEKNKAETEEIANKKAKNsEINNIDnKSNGSTID 738
                 6777888888756788999999999999888888762455544344445555 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.3       2.3   2.6e+03      92     125 ..      95     136 ..      70     161 .. 0.38
   2 ?    9.3   0.1    0.0011       1.3       2      24 ..     223     245 ..     222     253 .. 0.86
   3 ?    2.0   0.8       0.2   2.2e+02      70     131 ..     703     765 ..     663     782 .. 0.54

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 2.3
   Hydin_ADK  92 ssaaeekaasskiskkkktsvvsg........kkkaesegak 125
                  s+ ee+ + ++i k+ ++  ++         +k ++s + +
  CCD26307.1  95 PSNDEENDNGKAIWKSDQSYGINInalldrieSKSSDSRQIN 136
                 333333333333322222222222122222211111111111 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.0011
   Hydin_ADK   2 iivhGaPlsGKtatavtLakkYe 24 
                 +++hG+P  GKt+ a  Lak+ +
  CCD26307.1 223 LLIHGPPGIGKTSVAHVLAKQAG 245
                 68******************865 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.2
   Hydin_ADK  70 eeaekkegq.lsvealvkktselssaaeekaasskiskkkktsvvsgkkkaesegaksqkqke 131
                 +++ek++++     +  +k se++++ +++++s++ + kk+ ++v++ + +++e+    k+++
  CCD26307.1 703 DQVEKNKAEtEEIANKKAKNSEINNIDNKSNGSTIDFFKKQYNMVQKDSVEDIEKEPTTKKSN 765
                 222222221112222222333444444444444555555555566555555555544444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1691  (0.0943165); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        83  (0.00462937); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.45
# Mc/sec: 5247.25
//
Query:       CCD26308.1  [L=1349]
Description: hypothetical protein NDAI_0H01340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-06   26.9   0.0        5.8    7.5   0.0    5.5  4  HEAT             HEAT repeat
    1.2e-05   25.4  12.9    0.00052   20.1   1.4    5.9  7  Cnd1             non-SMC mitotic condensation complex subunit
      0.002   17.9   0.1       0.77    9.5   0.0    3.5  3  TIP120           TATA-binding protein interacting (TIP20)
     0.0025   17.4   1.8          3    7.4   0.0    3.8  4  NopRA1           Nucleolar pre-ribosomal-associated protein 1
  ------ inclusion threshold ------
      0.051   14.1   0.2      0.051   14.1   0.2    2.7  2  DNApol3-delta_C  DNA polymerase III, delta subunit, C termina
      0.071   13.6   0.0        3.9    8.1   0.0    3.5  4  HEAT_EZ          HEAT-like repeat


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0019       5.8       7      29 ..     340     362 ..     335     363 .. 0.86
   2 !    6.7   0.0    0.0034        10       5      26 ..     417     438 ..     415     439 .. 0.87
   3 ?    2.1   0.0       0.1   3.1e+02       2      27 ..     454     479 ..     453     482 .. 0.87
   4 ?    2.8   0.0     0.059   1.8e+02       5      25 ..    1000    1020 ..     999    1023 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0019
                 HHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgalae 29 
                 + ls+++ e R+ A k +g++++
  CCD26308.1 340 QELSSENEELRKQATKLIGQILS 362
                 558******************87 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0034
                 HHHHHT-SSHHHHHHHHHHHHH CS
        HEAT   5 llkllsDpspeVReaAakaLga 26 
                 l+k l+D++++VR+++++ + +
  CCD26308.1 417 LVKTLMDSDARVRKSSVLVFHE 438
                 78899***********998876 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.1
                 HHHHHHHHT-SSHHHHHHHHHHHHHH CS
        HEAT   2 lPlllkllsDpspeVReaAakaLgal 27 
                   +ll+l++ ++ +VRe +++++ +l
  CCD26308.1 454 YSTLLHLIREKNKDVRELSINTVSKL 479
                 67899999************999887 PP

  == domain 4  score: 2.8 bits;  conditional E-value: 0.059
                  HHHHHT-SSHHHHHHHHHHHH CS
        HEAT    5 llkllsDpspeVReaAakaLg 25  
                  l++l +D+s +VR++ + +L 
  CCD26308.1 1000 LINLVEDESLSVRKTFLDTLK 1020
                  67888*********9998886 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.15   4.5e+02      64     114 ..     109     162 ..     105     183 .. 0.70
   2 !    4.8   0.0    0.0087        26      15      80 ..     327     397 ..     324     415 .. 0.74
   3 !   20.1   1.4   1.7e-07   0.00052      17     141 ..     408     548 ..     391     558 .. 0.76
   4 ?    0.3   0.1      0.22   6.4e+02      60     127 ..     541     606 ..     535     612 .. 0.71
   5 ?   -3.7   0.0       3.6   1.1e+04     127     153 ..     712     738 ..     702     760 .. 0.48
   6 ?   -0.7   0.2      0.43   1.3e+03      77     107 ..     842     883 ..     818     942 .. 0.61
   7 ?    1.7   0.0     0.079   2.3e+02      51     117 ..     989    1049 ..     978    1111 .. 0.56

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.15
        Cnd1  64 aklleDenprVvanalaalteisek.sena..iynllpdiisklsdalnecsew 114
                 +kl++ +++ ++a + ++l++i++  +++a  + ++l di++ ++++ +++ e 
  CCD26308.1 109 KKLIKHKDAGIRAFTACCLSDILRLyAPDApyTDTQLTDIFKLFLSQFEHLGEL 162
                 578999999*************99985544114456677777776655554444 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.0087
        Cnd1  15 vpnlveylvepLrkrLkDedpyVRktaaivvakL..ilndmvkekg...flselaklleDenprVvanala 80 
                 vp+l+   +  +++ L+ e++  Rk+a  ++ ++  i+ ++  +      ++     + D np+++   + 
  CCD26308.1 327 VPELIASAIGFIYQELSSENEELRKQATKLIGQIlsIDSELNFVTThqdTFNAWMIKIADINPEIRIQWIE 397
                 7999999**************************97777775333330025555555568888888766555 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 1.7e-07
        Cnd1  17 nlveylvepLrkrLkDedpyVRktaaivvakL.ilndmvkekg..flselaklleDenprVvanalaalteisekse.........naiynllpdiisk 103
                 ++  ++ + L k+L D+d+ VRk  ++v+ +L ++       +  + s+l++l++++n+ V++++++  +++   s          ++i     dii  
  CCD26308.1 408 DISKEIEKGLVKTLMDSDARVRKSSVLVFHELpVSTIWTNITNpvIYSTLLHLIREKNKDVRELSINTVSKLYYDSIesidrtfqnTKIW----DIIDT 502
                 56677888999*********************866654444444699**********************999988442233333332222....33333 PP

        Cnd1 104 lsd........alnecsewgqitilefLlsyipkdkqeaeslvekl 141
                 + +        +  +++e+  + i+e +l + +++++ ++ l+  l
  CCD26308.1 503 IPSvlfnlyyiNVPNINEQVDRMIFENILPMDTDNEKRIKRLMHVL 548
                 33344446667777799999999***99999999999999988766 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.22
        Cnd1  60 lselaklleDenprVvanalaalteisekse..naiynllpdiisklsdalnecsewgqitilefLlsyi 127
                 +++l + l+D +++  +    ++   +++++   ++++  ++ ++ l +a +e s ++ + il++L + i
  CCD26308.1 541 IKRLMHVLSDLDKKAFT----SFFAFNKRQPqmALAFSKYIEFCQTLASADEESSPENSTRILTTLQKTI 606
                 66666666666665443....3344444432114778889999*********************998776 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 3.6
        Cnd1 127 ipkdkqeaeslveklcprlqhansavv 153
                   + +++a+ l  +l ++++++n+   
  CCD26308.1 712 SHSADSNANVLRHRLLDNISAVNPTLF 738
                 333333344444444444444444333 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.43
        Cnd1  77 nalaalteiseksenaiynllpdiisklsd...........a 107
                 + +++l+ei +  + ++ n   di+s+l +           +
  CCD26308.1 842 SHIIVLMEIFKFHPHILDNDSTDIVSYLIKeillsnkivgeK 883
                 567889999999999999999999999987555544444431 PP

  == domain 7  score: 1.7 bits;  conditional E-value: 0.079
        Cnd1   51 ndmvkekgflselaklleDenprVvanalaalteiseksenaiynllpdiisklsdalnecsewgqi 117 
                  ++++k+++ + +l +l+eDe+ +V++  l  l+ +  ++  + ++ lp i++ + +     +++  +
  CCD26308.1  989 QNFIKSSE-VVKLINLVEDESLSVRKTFLDTLKTYIGNE-LISIRFLPLIFFTMYEP----NNDLKK 1049
                  55555555.445555666666666655555555555554.45555555555555532....222222 PP

>> TIP120  TATA-binding protein interacting (TIP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00026      0.77      12     104 ..     398     492 ..     389     509 .. 0.86
   2 ?    3.5   0.0     0.018        55      35      59 ..    1004    1028 ..    1001    1052 .. 0.85
   3 ?   -1.0   0.0      0.45   1.3e+03      65     136 ..    1086    1162 ..    1062    1176 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00026
      TIP120  12 lvyketkvkkelireVqmGPFkhkvDdGLelRKaaYetlytl.letaldrldlselldrvlaGlsDe.hdikllcnlmlsklvalapeevlerld 104
                 ++ + + v++++ +e++ G  k  +D    +RK+   ++  l ++t++ ++    +++++l+ ++ + +d++ l+  ++skl + + e++ + ++
  CCD26308.1 398 AIPTILAVRDDISKEIEKGLVKTLMDSDARVRKSSVLVFHELpVSTIWTNITNPVIYSTLLHLIREKnKDVRELSINTVSKLYYDSIESIDRTFQ 492
                 55556789*************************9998888885677899****************999***************998888877654 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.018
      TIP120   35 kvDdGLelRKaaYetlytlletald 59  
                  + D++L++RK+  +tl t + + l 
  CCD26308.1 1004 VEDESLSVRKTFLDTLKTYIGNELI 1028
                  67****************9988554 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.45
      TIP120   65 elldrvlaGlsDehdikllcnlmlsklvalapeevler......ldelvealrktlskklkekavkqelEkqeelkrs 136 
                  +++d + +G  D+   + l+  +   l++ +  +++e+      l+e v++++  ++ + +e++++ ++E  e ++rs
  CCD26308.1 1086 DIIDGLKQGT-DDSYLNSLTTAIDYLLFYFDSIAIQENfnllyyLSERVKNYQDRVADEEDETTSEEDVEGGERAQRS 1162
                  3444444443.5555666666666666676766666666666668899999999999999999999999999999998 PP

>> NopRA1  Nucleolar pre-ribosomal-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0     0.001         3       2      28 ..     336     362 ..     335     377 .. 0.89
   2 ?   -2.9   0.0       1.4   4.2e+03      11      46 ..     464     500 ..     457     524 .. 0.73
   3 !    6.8   0.1    0.0015       4.4      77     182 ..     543     662 ..     539     666 .. 0.80
   4 ?   -2.9   0.2       1.4   4.2e+03      31      54 ..    1240    1267 ..    1217    1282 .. 0.61

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.001
      NopRA1   2 gllvlsLssedeeirrlAlavlsklla 28 
                 g++   Lsse+ee+r++A+++++++l+
  CCD26308.1 336 GFIYQELSSENEELRKQATKLIGQILS 362
                 677789*****************9975 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 1.4
      NopRA1  11 edeeirrlAlavlsklla.sleesssfkektqlllll 46 
                 +++++r+l+++++skl+  s+e+ ++  ++t ++ ++
  CCD26308.1 464 KNKDVRELSINTVSKLYYdSIESIDRTFQNTKIWDII 500
                 6889999999999998751455545444555555555 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0015
      NopRA1  77 ralriltnPehplYekvnrfllsrpe..ldlndvPlfysllyssseed.........eeykkersWiLrlladGlrtksDlkllkrr...rvfelllsl 161
                 r++++l++ +++ +   + f  ++p+  l + +   f ++l s++ee+         ++ +k + W+   l d+l+ ++ l+ l++    r+f l+ + 
  CCD26308.1 543 RLMHVLSDLDKKAFTSFFAFNKRQPQmaLAFSKYIEFCQTLASADEESspenstrilTTLQKTIDWLASGLSDSLKANEALETLRKIndqRIFFLIKTC 641
                 67889999999999999999999876115668899999********99**********************************99764222788777777 PP

      NopRA1 162 ynsplldaklrelilelllra 182
                 + + +  a l+++  el+ ++
  CCD26308.1 642 IGNNVPFATLKNSYNELINKL 662
                 777666666666666666665 PP

  == domain 4  score: -2.9 bits;  conditional E-value: 1.4
      NopRA1   31 e....esssfkektqlllllselletll 54  
                  +    +s++++++ q  ll +e+ ++  
  CCD26308.1 1240 NrifhTSQTHRQRAQKRLLANEINDSNS 1267
                  2233255557788888888888888444 PP

>> DNApol3-delta_C  DNA polymerase III, delta subunit, C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.4       2.6   7.8e+03      10     101 ..      11     101 ..       7     112 .. 0.59
   2 ?   14.1   0.2   1.7e-05     0.051       5      90 ..     574     659 ..     571     664 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.6
                      HHHHH.HHHHHHT--GGGHHHHSSTTHH.HHHHHHHHHHHHHHHHTTT-S..--S-TT-HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHSTT CS
  DNApol3-delta_C  10 llqalkalalkrrdllsllpllnkedal.erleWLlslLlDalklqqgaqe.qlvnqdqlplikqlakrlsiekLlkilqkllelreqLlsisg 101
                      l+q l + + k++ + + +++ ++++    r++ L ++++ a kl +  q+  +   ++l + + l +  ++++L++ l +l + + +L s +g
       CCD26308.1  11 LYQRL-KKQTKQNTFDKRFSTTSNNQFShPRFYTLRLIMVKASKLTLSFQKpIISTSEHLISTRDLLE--NLASLHEELSTLPQDKVDLRSLDG 101
                      56666.44455555555555555555445777777777777777777777755545555555555544..577777777777777777776666 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 1.7e-05
                      HHHHHHHHHH.HHHHHHT--GGGHHHHSSTTHHHHHHHHHHHHHHHHHHTTT-S...--S-TT-HHHHHH.HHHHS-HHHHHHHHHHHH CS
  DNApol3-delta_C   5 kqRkallqalkalalkrrdllsllpllnkedalerleWLlslLlDalklqqgaqe..qlvnqdqlplikq.lakrlsiekLlkilqkll 90 
                      +++ +++q+l a a ++ ++ +    l   +  ++++WL+s L+D lk++   +   ++  q +  lik  + ++++++ L +++++l+
       CCD26308.1 574 SKYIEFCQTL-ASADEESSPENSTRILTTLQ--KTIDWLASGLSDSLKANEALETlrKINDQRIFFLIKTcIGNNVPFATLKNSYNELI 659
                      67899*****.99999999999999999995..89***************777766355556666777642667888888888888876 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.6   4.8e+03      37      55 .]     342     360 ..     329     360 .. 0.88
   2 ?    8.1   0.0    0.0013       3.9      27      49 ..     411     433 ..     401     436 .. 0.85
   3 ?   -2.1   0.0         2     6e+03      29      55 .]     453     479 ..     451     479 .. 0.76
   4 ?    0.2   0.0      0.39   1.2e+03      32      52 ..     999    1019 ..     994    1021 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.6
     HEAT_EZ  37 LnddsdeVRaaAagaLgnl 55 
                 L++++ e R++A   +g++
  CCD26308.1 342 LSSENEELRKQATKLIGQI 360
                 67888999****9999997 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0013
     HEAT_EZ  27 peilpaLlalLnddsdeVRaaAa 49 
                 +ei + L+++L+d++++VR+ ++
  CCD26308.1 411 KEIEKGLVKTLMDSDARVRKSSV 433
                 588899*************9876 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 2
     HEAT_EZ  29 ilpaLlalLnddsdeVRaaAagaLgnl 55 
                 i   Ll l + ++++VR+ ++ + ++l
  CCD26308.1 453 IYSTLLHLIREKNKDVRELSINTVSKL 479
                 55667777788999****999988775 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.39
     HEAT_EZ   32 aLlalLnddsdeVRaaAagaL 52  
                   L++l +d+s +VR++ + +L
  CCD26308.1  999 KLINLVEDESLSVRKTFLDTL 1019
                  699***********9977666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1349 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1798  (0.100284); expected 358.6 (0.02)
Passed bias filter:                      618  (0.0344693); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.97u 0.29s 00:00:01.26 Elapsed: 00:00:00.44
# Mc/sec: 9200.87
//
Query:       CCD26309.1  [L=866]
Description: hypothetical protein NDAI_0H01350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-13   49.9  19.8    3.6e-10   39.6   8.3    2.8  3  PHD          PHD-finger
  ------ inclusion threshold ------
      0.048   13.7   0.8       0.37   10.9   0.0    2.8  2  zf-BED       BED zinc finger
      0.074   13.7   2.7       0.35   11.6   2.7    2.2  1  Zn_ribbon_2  Putative zinc ribbon domain


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   8.3     6e-14   3.6e-10       1      50 [.     386     431 ..     386     433 .. 0.96
   2 ?   -1.0   0.1      0.28   1.7e+03      12      23 ..     566     577 ..     561     578 .. 0.74
   3 !   14.9   3.9   3.1e-06     0.019       2      47 ..     572     625 ..     571     626 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.6 bits;  conditional E-value: 6e-14
                 SBTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   1 rCavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50 
                 +C++C +     + +++Cd+C r+fH  Cl+ppl++++ peg+w C +C 
  CCD26309.1 386 YCSACLQ----AGSFLCCDTCPRSFHFLCLDPPLDPNNLPEGDWSCHHCL 431
                 699***9....9*************************************7 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.28
                 TSCEEEETTTSC CS
         PHD  12 eeelvqCdgCkr 23 
                 +++++ C +Ck+
  CCD26309.1 566 PDNFLICYRCKT 577
                 677888999986 PP

  == domain 3  score: 14.9 bits;  conditional E-value: 3.1e-06
                 BTTTTS.......TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS.TBSST CS
         PHD   2 CavCkk.......ksdeeeelvqCdgCkrwfHqkClkppleseekpeg.ewlCe 47 
                 C  Ck        + ++++ ++ Cd C++  H +C+    + + k  g +w C+
  CCD26309.1 572 CYRCKTtkmgtwdHPENSRLIMKCDYCNTPWHLDCIPQVPRASLKNLGyKWKCP 625
                 5555555556665567788999**************8887755444448****7 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.1e-05      0.37      11      35 ..     419     442 ..     407     444 .. 0.81
   2 ?   -0.5   0.2      0.21   1.3e+03       5      23 ..     584     599 ..     582     600 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 6.1e-05
                 -GGSS--EETTTTEE----SSTHHH CS
      zf-BED  11 slkeqkavCryCgkilsrgggttnL 35 
                 +l e+ + C +C ++l+++ +tt L
  CCD26309.1 419 NLPEGDWSCHHCLFKLKYS-NTTQL 442
                 377899************9.99988 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.21
                 SSS----GGSS--EETTTT CS
      zf-BED   5 kyftpvslkeqkavCryCg 23 
                 ++           +C yC+
  CCD26309.1 584 DHPENSR---LIMKCDYCN 599
                 5554444...7789****7 PP

>> Zn_ribbon_2  Putative zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.7   5.9e-05      0.35      13      39 ..     372     398 ..     367     412 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5.9e-05
  Zn_ribbon_2  13 edlgteadgsksedYCkyCykdGefte 39 
                  ++  +++ +++++dYC+ C + G+f  
   CCD26309.1 372 QEAEQQKAEQENDDYCSACLQAGSFLC 398
                  4455788999***************76 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1479  (0.0824921); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.24s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 6141.78
//
Query:       CCD26310.1  [L=151]
Description: hypothetical protein NDAI_0H01360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-27   95.9   1.5      2e-27   95.6   1.5    1.1  1  dsDNA_bind   Double-stranded DNA-binding domain
  ------ inclusion threshold ------
      0.065   13.9   1.7       0.13   12.9   1.7    1.5  1  cwf18        cwf18 pre-mRNA splicing factor
      0.081   11.0   4.5        0.1   10.7   4.5    1.1  1  DNA_pol_phi  DNA polymerase phi


Domain annotation for each model (and alignments):
>> dsDNA_bind  Double-stranded DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   1.5   3.4e-31     2e-27       1     111 []       8     122 ..       8     122 .. 0.88

  Alignments for each domain:
  == domain 1  score: 95.6 bits;  conditional E-value: 3.4e-31
                 XXXXXXXXXXXXXXXXXXXX....XXXX--SS..S--SSHHHHTTS--HHHHHHHHHHTTT-HHHHHHHHHHHHHHHH--SS-----HHHHHHHHHHHS CS
  dsDNA_bind   1 irkarlaelqaqagsssgsg.gaseqqeqqqeaseeeakqaiLsqiLepeAreRLsrirlvkperaeavenrLiqlaqsGqlrskvteeqLkeLLeqva 98 
                 +r+arlael++++g+s ++g +++++++++ +a+++e   a+++++LepeA eRL+r++lv+p+ra ave++L q++ sGq+++kv+e++++++L+ +a
  CCD26310.1   8 LREARLAELKRSQGQSPDAGsNGNTHNNNNGNANRNEPIGAAIARFLEPEAFERLTRVSLVRPDRAMAVEQYLKQIIASGQVQHKVNESEIVQILNGIA 106
                 69************9988775333344444455689999************************************************************ PP

                 -...--XXXXX..XXX CS
  dsDNA_bind  99 e...kkketkivisrr 111
                 +   kk++tki ++rr
  CCD26310.1 107 KeenKKNDTKIIFNRR 122
                 99855566******97 PP

>> cwf18  cwf18 pre-mRNA splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   1.7   2.2e-05      0.13       8     106 ..       8     137 ..       4     145 .. 0.55

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.2e-05
       cwf18   8 eRKeRLaalrskkrkqeekeke.eeeeeeeeeekkelpk...........................lsfRnYdpeteglklgfeappklaketveeqaa 78 
                  R +RLa+l++ + +++++ ++ +++++++ + + ++p                            +   +Y  +     +g+++++ + ++++ + ++
  CCD26310.1   8 LREARLAELKRSQGQSPDAGSNgNTHNNNNGNANRNEPIgaaiarflepeaferltrvslvrpdraMAVEQYLKQII--ASGQVQHKVN-ESEIVQILN 103
                 599*************9744443444444444444433377777777777777766666665555555555554442..3444443333.234444444 PP

       cwf18  79 eleeeakeeaee.....skeidl.fnlapkkpnw 106
                  +++e ++++++     ++e+d+ + la  k n 
  CCD26310.1 104 GIAKEENKKNDTkiifnRREVDIdTGLAGAKKNN 137
                 4444444333334566666666655666555444 PP

>> DNA_pol_phi  DNA polymerase phi
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.5   1.7e-05       0.1     608     666 ..      88     147 ..      77     150 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 1.7e-05
  DNA_pol_phi 608 afasevteegLellldvLearenkegqaelf.edededeeddeeeeeeddeededseedd 666
                  ++ ++v+e+++ ++l+ + ++enk+++ ++  +  + d ++    +++++++ded++++d
   CCD26310.1  88 QVQHKVNESEIVQILNGIAKEENKKNDTKIIfNRREVDIDTGLAGAKKNNDDDEDDDDED 147
                  66789******************7777776634444444444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1091  (0.0608511); expected 358.6 (0.02)
Passed bias filter:                      580  (0.0323498); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1199.82
//
Query:       CCD26311.1  [L=224]
Description: hypothetical protein NDAI_0H01370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-18   65.8   0.1    4.5e-18   65.2   0.1    1.3  1  Cyt-b5    Cytochrome b5-like Heme/Steroid binding domain
  ------ inclusion threshold ------
      0.063   13.4   1.2        1.1    9.5   0.1    2.1  2  DUF382    Domain of unknown function (DUF382)


Domain annotation for each model (and alignments):
>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   0.1     5e-22   4.5e-18       3      73 ..     150     220 ..     148     221 .. 0.93

  Alignments for each domain:
  == domain 1  score: 65.2 bits;  conditional E-value: 5e-22
                 HHHTTTECTTEEEEEETTEEEECTTTCCCSTTCSHHHH.TTTTSBBHHHHHHTTGGCHHHHHHHHGGEEEEE CS
      Cyt-b5   3 eelskhngkndlwvairgkVYDvskflskhpGgesail.kyaGkDateafksvvhsekdaekllkkylvGkl 73 
                 + l+kh +++d+w++ +gkVY ++ +l++hpGg++++l ++aGkD+t++f+ + h + ++ekl++++l+G +
  CCD26311.1 150 KILQKHVSEDDCWTVHNGKVYCMTYYLHFHPGGADILLeEAAGKDCTRLFNEY-HPWVNVEKLFETCLIGAY 220
                 5699*****************************99875279************.****************87 PP

>> DUF382  Domain of unknown function (DUF382)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2      0.01        92      50      94 ..       4      48 ..       1      55 [. 0.62
   2 ?    9.5   0.1   0.00012       1.1      61     104 ..      53      97 ..      48     101 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.01
      DUF382 50 kkpfelPkfikeTgieelrealeekeeekslkekarekvqpklgk 94
                kk f++Pk+  +    +  +++++ +++++  +++r+ + p+++k
  CCD26311.1  4 KKDFKTPKISFQIPTVTTTTTAANGNDKSNKLQQNRNDLDPRVNK 48
                777888887555443333334444445555557788889998876 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00012
      DUF382  61 eTgieelrealeek.eeekslkekarekvqpklgkldidykkLhd 104
                 + g ++l ++++++ +++++ k+k+r+kv+ k g+  +d+ kL +
  CCD26311.1  53 QSGCSTLGSNVADSdDDKNNNKKKIRNKVRLKPGHSALDWYKLTN 97 
                 5566666666655505666899*****************999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.27s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1641.52
//
Query:       CCD26312.1  [L=193]
Description: hypothetical protein NDAI_0H01380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-30  103.3  12.3    1.1e-14   54.5   2.2    2.2  2  HMG_box         HMG (high mobility group) box
    1.6e-21   76.7   9.4      5e-11   43.0   1.8    2.2  2  HMG_box_2       HMG-box domain
  ------ inclusion threshold ------
      0.087   12.9   2.1       0.19   11.8   2.1    1.6  1  DUF1299         Protein of unknown function (DUF1299)
       0.18   12.4   2.4       0.72   10.5   0.1    2.8  3  Arg_decarbox_C  Arginine decarboxylase C-terminal helical ext
       0.37   10.5   6.6       0.33   10.6   1.0    2.7  3  KRAB            KRAB box


Domain annotation for each model (and alignments):
>> HMG_box  HMG (high mobility group) box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   2.7   3.8e-18   1.4e-14       1      63 [.      53     116 ..      53     121 .. 0.94
   2 !   54.5   2.2   3.2e-18   1.1e-14       1      66 [.     127     192 ..     127     193 .] 0.96

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 3.8e-18
                 --SS--HHHHHHHHHHHHHHHHSTTS-.HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaenPelk.naeiskklgekWkalseeeKkkYeekaekekaryek 63 
                 +kRp+sa+++++   +++l a  P  +  + ++++++e Wk+ls+eeK ++e++aek+k+ y++
  CCD26312.1  53 VKRPMSAYLIYYTSVKDELIANSPAKSqMKILAQTASENWKNLSAEEKVPFEKEAEKQKENYRS 116
                 69***********************99788889*****************************97 PP

  == domain 2  score: 54.5 bits;  conditional E-value: 3.2e-18
                 --SS--HHHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH CS
     HMG_box   1 pkRplsafflfskeqraklkaenPelknaeiskklgekWkalseeeKkkYeekaekekaryekekp 66 
                 pk+p+ a++ f+++ r++++ e+P+l+ +e+sk+ +ekW++l + eK kY +++++  ++ e++++
  CCD26312.1 127 PKKPTPAYITFAQDIRESIVNEDPTLTFNEVSKITSEKWQQLDQTEKDKYLNDYKENLKKWESKNK 192
                 8******************************************************99999888765 PP

>> HMG_box_2  HMG-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   1.8   1.4e-14     5e-11       5      67 ..      54     116 ..      50     122 .. 0.94
   2 !   38.2   1.0   4.5e-13   1.6e-09       4      63 ..     127     185 ..     126     193 .] 0.89

  Alignments for each domain:
  == domain 1  score: 43.0 bits;  conditional E-value: 1.4e-14
                 -SS--HHHHHHHTTHHHHHHHT--.-SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHHHHHH CS
   HMG_box_2   5 kaarnAYalfvqemipelkrkGnp.viglaevsklcsekWkalseeeKekYeekAkedkkrydr 67 
                 k++++AY+++++  ++el ++ +p  ++++   + +se+Wk+ls+eeK ++e++A ++k++y++
  CCD26312.1  54 KRPMSAYLIYYTSVKDELIAN-SPaKSQMKILAQTASENWKNLSAEEKVPFEKEAEKQKENYRS 116
                 99*******************.8889***********************************986 PP

  == domain 2  score: 38.2 bits;  conditional E-value: 4.5e-13
                 .-SS--HHHHHHHTTHHHHHHHT---SSHHHHTGGGHHHHHHS-HHHHHHHHHHHHHHHH CS
   HMG_box_2   4 pkaarnAYalfvqemipelkrkGnpviglaevsklcsekWkalseeeKekYeekAkedkk 63 
                 pk ++ AY+ f+q+ ++ + ++  p+  ++evsk  sekW++l + eK kY +  ke  k
  CCD26312.1 127 PKKPTPAYITFAQDIRESIVNE-DPTLTFNEVSKITSEKWQQLDQTEKDKYLNDYKENLK 185
                 788999****************.****************************988777544 PP

>> DUF1299  Protein of unknown function (DUF1299)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   2.1   5.3e-05      0.19      15      44 ..      94     120 ..      87     123 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 5.3e-05
     DUF1299  15 iLSDdEdNgTAPtEKESqpkKeeTteVpkE 44 
                 +LS +E     P EKE +++Ke+   V+kE
  CCD26312.1  94 NLSAEEK---VPFEKEAEKQKENYRSVLKE 120
                 5555554...6******************9 PP

>> Arg_decarbox_C  Arginine decarboxylase C-terminal helical extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.6   5.8e+03      31      46 ..      33      48 ..      20      49 .. 0.59
   2 ?    0.7   0.1      0.23   8.2e+02      24      39 ..      86     105 ..      78     121 .. 0.69
   3 ?   10.5   0.1    0.0002      0.72      23      46 ..     161     185 ..     154     186 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 1.6
  Arg_decarbox_C 31 peerqalleeleagLk 46
                     +e+q   ++l++ Lk
      CCD26312.1 33 VSEKQLTRNQLKNQLK 48
                    5566655566666654 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.23
  Arg_decarbox_C  24 eaa....grLtpeerqalle 39 
                     ++a    ++L++ee+  + +
      CCD26312.1  86 QTAsenwKNLSAEEKVPFEK 105
                     33344588899998876655 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.0002
  Arg_decarbox_C  23 veaa.grLtpeerqalleeleagLk 46 
                     + ++ ++L++ e+ ++l++++++Lk
      CCD26312.1 161 TSEKwQQLDQTEKDKYLNDYKENLK 185
                     4555789****************98 PP

>> KRAB  KRAB box
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.93   3.3e+03      33      38 ..      90      95 ..      80     100 .. 0.70
   2 ?    2.2   0.1     0.039   1.4e+02      21      33 ..     108     120 ..     106     125 .. 0.84
   3 ?   10.6   1.0   9.2e-05      0.33       3      35 ..     153     184 ..     151     188 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.93
        KRAB 33 Enyrnl 38
                En +nl
  CCD26312.1 90 ENWKNL 95
                555555 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.039
        KRAB  21 paQreLYrdVMlE 33 
                 + Q+e Yr V +E
  CCD26312.1 108 EKQKENYRSVLKE 120
                 5799999999888 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 9.2e-05
        KRAB   3 tFeDVaVdFtqeEWelLdpaQreLYrdVMlEny 35 
                 tF  V+   t e W++Ld + ++ Y +  +En 
  CCD26312.1 153 TFNEVS-KITSEKWQQLDQTEKDKYLNDYKENL 184
                 555555.6899**************99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1758  (0.0980534); expected 358.6 (0.02)
Passed bias filter:                      510  (0.0284455); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1486.71
//
Query:       CCD26313.1  [L=167]
Description: hypothetical protein NDAI_0H01390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-37  128.6  15.4    1.8e-37  128.1  15.4    1.2  1  Cg6151-P  Uncharacterized conserved protein CG6151-P
  ------ inclusion threshold ------
       0.66    8.5   9.3        1.1    7.9   9.3    1.2  1  ATG22     Vacuole effluxer Atg22 like


Domain annotation for each model (and alignments):
>> Cg6151-P  Uncharacterized conserved protein CG6151-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1  15.4     2e-41   1.8e-37       1     113 []      30     141 ..      30     141 .. 0.98

  Alignments for each domain:
  == domain 1  score: 128.1 bits;  conditional E-value: 2e-41
    Cg6151-P   1 lGilsiilcialGianiftlsvvlivfsilalvsgfvvlfiEvPlllricptsskfdefiekfetnwmraalYlvmavvqwlslivqatslivaavlll 99 
                 +G+++iilci lGi n+f++++v i+f+i+++++g+v+lfiE+P+ll+icp+s++f efi++fetn +r+++Ylvma++q++s++++atsliv+av l+
  CCD26313.1  30 FGYINIILCIGLGISNLFHVNAV-IAFGIVSIIQGLVILFIEIPFLLKICPLSERFIEFIKRFETNGYRCVFYLVMAIIQYCSIALMATSLIVVAVGLT 127
                 69*********************.*************************************************************************** PP

    Cg6151-P 100 ltgvlYglaalkkq 113
                 ++++ Y++a  ++q
  CCD26313.1 128 ISSISYAIAFTNHQ 141
                 *********99887 PP

>> ATG22  Vacuole effluxer Atg22 like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   9.3   0.00012       1.1     191     311 ..      21     139 ..      14     149 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00012
       ATG22 191 triSslGlaigylgailvqiisilivialgstatfslrlalllvGlwWliftipaalllkkrpgpplpkglsyliygwkslgrtlkqarklkdvllfLv 289
                  + S++G  +gy+  il+  ++i  ++ +++   +++ ++ ++ Gl+ l++ ip +l + + + + ++ ++++ ++g + ++++++ + ++ +++l  +
  CCD26313.1  21 FNFSVYGRWFGYINIILCIGLGISNLFHVNAV--IAFGIVSIIQGLVILFIEIPFLLKICPLSERFIEFIKRFETNGYRCVFYLVMAIIQYCSIALMAT 117
                 567999*******9999888888888888885..***************************************************************** PP

       ATG22 290 awfllsdgiatvsstavlfakt 311
                 + +++ +g++  s   ++ +++
  CCD26313.1 118 SLIVVAVGLTISSISYAIAFTN 139
                 ********98644433333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1161  (0.0647554); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1336.09
//
Query:       CCD26314.1  [L=541]
Description: hypothetical protein NDAI_0H01400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-05   23.7  12.8    5.2e-05   23.5   2.8    2.6  2  zf-C2H2      Zinc finger, C2H2 type
    7.5e-05   23.2  12.4      0.003   18.3   2.6    2.8  2  zf-C2H2_4    C2H2-type zinc finger
    0.00049   20.3   1.7    0.00088   19.5   1.7    1.4  1  zf-Di19      Drought induced 19 protein (Di19), zinc-binding
     0.0056   16.7   1.8     0.0056   16.7   1.8    3.1  3  zf-BED       BED zinc finger
  ------ inclusion threshold ------
      0.012   15.9   3.3          2    8.8   0.2    2.4  2  zf-C2H2_2    C2H2 type zinc-finger (2 copies)
       0.03   14.1   0.0      0.055   13.3   0.0    1.4  1  UPF0167      Uncharacterised protein family (UPF0167)
       0.13   12.7   4.7       0.18   12.3   0.7    2.7  2  zf-met       Zinc-finger of C2H2 type
        0.2   12.0   1.0       0.69   10.3   1.0    2.0  1  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
        2.2    8.9  16.1        5.6    7.6   3.8    4.0  4  zf-H2C2_2    Zinc-finger double domain


Domain annotation for each model (and alignments):
>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   2.8   2.6e-08   5.2e-05       1      23 []     400     422 ..     400     422 .. 0.98
   2 ?    5.2   2.5     0.016        33       2      23 .]     429     451 ..     428     451 .. 0.89

  Alignments for each domain:
  == domain 1  score: 23.5 bits;  conditional E-value: 2.6e-08
                 EEETTTTEEESSHHHHHHHHHCC CS
     zf-C2H2   1 ykCpdCgksFkrksnLkrHirtH 23 
                 y+C +C k+Fkr+s LkrH+ +H
  CCD26314.1 400 YRCRICEKKFKRRSWLKRHLLSH 422
                 9*******************999 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.016
                 EETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2   2 kCpdCgksFkrksnLkrHirt.H 23 
                  Cp C  + kr++nL +H++  H
  CCD26314.1 429 LCPWCLSRHKRRDNLLQHMKLkH 451
                 5888998899**********999 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   2.6   1.5e-06     0.003       1      23 [.     400     422 ..     400     423 .. 0.96
   2 !    9.5   2.3   0.00097       1.9       1      24 []     428     451 ..     428     451 .. 0.93

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.5e-06
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkth 23 
                 ++C+iC k F++++ L+rHl++h
  CCD26314.1 400 YRCRICEKKFKRRSWLKRHLLSH 422
                 89********************9 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00097
   zf-C2H2_4   1 fkCpiCgksFsskkaLlrHlkthH 24 
                 + Cp+C  + +++++Ll+H+k  H
  CCD26314.1 428 YLCPWCLSRHKRRDNLLQHMKLKH 451
                 78****99999**********998 PP

>> zf-Di19  Drought induced 19 protein (Di19), zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   1.7   4.4e-07   0.00088       1      53 [.     398     451 ..     398     452 .. 0.79

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 4.4e-07
     zf-Di19   1 esftCPyCgkeltvkeLveHvedeHrveskevvCPvCa..ekvtkdlvaHltleh 53 
                 +s+ C  C+k+++  + ++     H++e++ + CP C   +k +++l +H++l+h
  CCD26314.1 398 QSYRCRICEKKFKRRSWLKRHLLSHSSERH-YLCPWCLsrHKRRDNLLQHMKLKH 451
                 6899******99988766555555888766.79****73355778*********9 PP

>> zf-BED  BED zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3       1.4   2.8e+03      26      38 ..      82      95 ..      78      98 .. 0.80
   2 !   16.7   1.8   2.8e-06    0.0056      11      40 ..     394     420 ..     386     428 .. 0.83
   3 ?    3.9   1.6     0.027        54      22      44 .]     430     452 ..     428     452 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.4
                ----.SSTHHHHHH CS
      zf-BED 26 lsrg.ggttnLkrH 38
                ++r+ ++t+ + +H
  CCD26314.1 82 INRSiSNTSPMLYH 95
                667789***99999 PP

  == domain 2  score: 16.7 bits;  conditional E-value: 2.8e-06
                 -GGSS--EETTTTEE----SSTHHHHHHHH CS
      zf-BED  11 slkeqkavCryCgkilsrgggttnLkrHLr 40 
                 ++++q+ +Cr+C+k+++r+   + LkrHL 
  CCD26314.1 394 DIESQSYRCRICEKKFKRR---SWLKRHLL 420
                 56799*************9...*******3 PP

  == domain 3  score: 3.9 bits;  conditional E-value: 0.027
                 TTEE----SSTHHHHHHHHHS-H CS
      zf-BED  22 CgkilsrgggttnLkrHLrrkHp 44 
                 C + lsr+    nL +H++ kHp
  CCD26314.1 430 CPWCLSRHKRRDNLLQHMKLKHP 452
                 88999999999***********8 PP

>> zf-C2H2_2  C2H2 type zinc-finger (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2   0.00098         2      35      73 ..     383     422 ..     372     429 .. 0.74
   2 ?    7.6   1.3    0.0024       4.8      48      74 ..     425     451 ..     418     468 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00098
   zf-C2H2_2  35 dleglleylrekiee.kleClyCekefkslealreHmkkk 73 
                  + ++l++ +  ie+ +++C +Cek+fk ++ l+ H+ ++
  CCD26314.1 383 AIATILSMGEFDIESqSYRCRICEKKFKRRSWLKRHLLSH 422
                 5556666666666654789*****************9765 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0024
   zf-C2H2_2  48 eekleClyCekefkslealreHmkkkg 74 
                 e+++ C +C ++ k +++l +Hmk k+
  CCD26314.1 425 ERHYLCPWCLSRHKRRDNLLQHMKLKH 451
                 556778888888888888888888764 PP

>> UPF0167  Uncharacterised protein family (UPF0167)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.7e-05     0.055      16      55 ..     395     437 ..     386     489 .. 0.73

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.7e-05
     UPF0167  16 iekeeekCqcCgke...reliyespfysvedvealCpwCiadG 55 
                 ie+++  C++C+k+   r+++ ++ +   ++ ++lCpwC++  
  CCD26314.1 395 IESQSYRCRICEKKfkrRSWLKRHLLSHSSERHYLCPWCLSRH 437
                 5668899*****86332556666666666778*******9864 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.7   8.9e-05      0.18       1      23 [.     400     422 ..     400     423 .. 0.93
   2 ?    0.8   0.2      0.35     7e+02       3      21 ..     430     448 ..     428     448 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 8.9e-05
      zf-met   1 fyCelCnvtfnsesqlksHlqGK 23 
                 + C +C ++f+ +s lk Hl ++
  CCD26314.1 400 YRCRICEKKFKRRSWLKRHLLSH 422
                 78*****************9886 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.35
      zf-met   3 CelCnvtfnsesqlksHlq 21 
                 C+ C  +++ + +l +H++
  CCD26314.1 430 CPWCLSRHKRRDNLLQHMK 448
                 66699999*********96 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   1.0   0.00035      0.69       2      24 ..     400     422 ..     399     423 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00035
                  CBBTTTTBBBSSHHHHHCCTTSH CS
  zf-C2H2_jaz   2 fYCvlCdKyFksenaldnHlkSK 24 
                  + C +C+K Fk  + l+ Hl S+
   CCD26314.1 400 YRCRICEKKFKRRSWLKRHLLSH 422
                  88******************997 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       4.5     9e+03       7      14 ..     310     317 ..     309     319 .. 0.79
   2 ?    7.0   0.1    0.0043       8.5      15      26 .]     400     411 ..     390     411 .. 0.81
   3 ?    7.6   3.8    0.0028       5.6       2      22 ..     415     435 ..     415     439 .. 0.88
   4 ?    1.0   0.1      0.33   6.6e+02       1      11 [.     442     453 ..     442     456 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 4.5
   zf-H2C2_2   7 rkHtgekp 14 
                 r+H+++++
  CCD26314.1 310 RSHHSQNF 317
                 89**9985 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0043
   zf-H2C2_2  15 yeCplCdkaFkt 26 
                 y C  C k+Fk+
  CCD26314.1 400 YRCRICEKKFKR 411
                 9*********96 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.0028
   zf-H2C2_2   2 LrrHirkHtgekpyeCplCdk 22 
                 L+rH+ +H +e+ y Cp C  
  CCD26314.1 415 LKRHLLSHSSERHYLCPWCLS 435
                 89***************8865 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.33
   zf-H2C2_2   1 nLrrHir.kHtg 11 
                 nL +H++ kH++
  CCD26314.1 442 NLLQHMKlKHPN 453
                 7889***66975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       670  (0.0373696); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 3694.74
//
Query:       CCD26315.1  [L=311]
Description: hypothetical protein NDAI_0H01410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2275.06
//
Query:       CCD26316.1  [L=448]
Description: hypothetical protein NDAI_0H01420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-49  166.0   0.3    1.5e-48  164.5   0.1    1.8  2  NIF       NLI interacting factor-like phosphatase


Domain annotation for each model (and alignments):
>> NIF  NLI interacting factor-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0     0.094   1.7e+03       8      16 ..     157     165 ..     156     200 .. 0.76
   2 !  164.5   0.1   8.5e-53   1.5e-48       1     156 []     253     432 ..     253     432 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.094
         NIF   8 DetLvhskl 16 
                 DetLvh+++
  CCD26316.1 157 DETLVHNNS 165
                 9*****996 PP

  == domain 2  score: 164.5 bits;  conditional E-value: 8.5e-53
         NIF   1 ktLVLDLDetLvhskleks.k.........klkve....gekvevsvlkRpgldefLkelsklyevvifTasseeyaeavidildpekkl.lshrlyre 84 
                 k LVLDLDetL+hs ++ + +         +  v+    g ++ ++v+kRp++d fL +++k+y+++ifTas++eya++vid+l+   +  +++r+yr 
  CCD26316.1 253 KKLVLDLDETLIHSISRGTtHtnvsqghivE--VKfsssGVSMLYYVHKRPYCDFFLSKVCKWYDLIIFTASMKEYADPVIDWLEASFQGtFTERYYRT 349
                 579***********97444336677888552..334466889******************************************6665545******** PP

         NIF  85 scvkkkg.eyvKdLsll..........grdlsrvvivDdspdsfelqpengipiksffsdkkDneLlkllpllkelakvddvr 156
                 +c++++g  y+KdL+++             ls+v+i+D+sp s++++ +n+i+++ ++sd++D++Ll+llpll++l++ +dvr
  CCD26316.1 350 DCIRRDGvGYIKDLTIIkddsnvsvpqTSTLSEVIILDNSPISYAMNADNAIQVEGWISDPTDTALLNLLPLLEALRYTTDVR 432
                 **988666********9665555444444999*************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       457  (0.0254894); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 3044.33
//
Query:       CCD26317.1  [L=363]
Description: hypothetical protein NDAI_0H01430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-62  205.4   1.2    9.2e-23   80.0   0.0    3.4  3  Mito_carr  Mitochondrial carrier protein


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   5.1e-27   9.2e-23       5      94 ..      39     130 ..      36     133 .. 0.93
   2 !   53.3   0.0   1.1e-18     2e-14       5      93 ..     138     238 ..     135     241 .. 0.93
   3 !   68.9   0.3   1.5e-23   2.7e-19       3      91 ..     268     359 ..     267     362 .. 0.92

  Alignments for each domain:
  == domain 1  score: 80.0 bits;  conditional E-value: 5.1e-27
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkrlll 94 
                 ++k+ +aGgl+g++a+++++Pld++K+ +qt++ +++k    +    ++++ k+i+ ++G+rg+y+G +++l+r++p++a+kfv+ye+++++l 
  CCD26317.1  39 IMKSAIAGGLSGSCAKTLIAPLDRIKILFQTSNPHYTKYA--GslvgLVEAAKHIWINDGIRGFYQGHSVTLIRIFPYAAVKFVAYEQIRNFLI 130
                 67899******************************98854..34699*******************************************9986 PP

  == domain 2  score: 53.3 bits;  conditional E-value: 1.1e-18
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSSHHHHHHHHHHHHHHHG................GGTTHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaaildvlkkiykeeGlrg................lyrGllpnllrvapasalkfvlye 87 
                  +++ll+G+lag++++++t+Pld++++rl    ++++  +   ++dv+k+iy e   +                 +yrG++p++l+++p++++ f++ +
  CCD26317.1 138 HWRRLLSGSLAGLCSVFMTYPLDLIRVRLAYVTEHKRV-H---LIDVVKTIYTEPASTTlkmkwyipnwfahwcnFYRGYTPTVLGMIPYAGVSFFAHD 232
                 699***************************99998776.3...9********9998888889***********************************99 PP

                 HHHHHH CS
   Mito_carr  88 tlkrll 93 
                  l+++l
  CCD26317.1 233 LLHDIL 238
                 998876 PP

  == domain 3  score: 68.9 bits;  conditional E-value: 1.5e-23
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS...HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa...ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlkr 91 
                 l++++el++Gg+ag++++++++P+++++ rlq++  s ++ + ++   i +v k iyke G +g++ Gl++  ++v+p  a+ f++ye +k 
  CCD26317.1 268 LKTWAELFSGGIAGMASQTAAYPFEIIRRRLQVSTLSVSNMYTHKfqtISEVAKIIYKERGWKGFFVGLSIGYIKVTPMVACSFFVYERMKL 359
                 6899*****************************888877766666777****************************************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       371  (0.0206927); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.28s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2425.42
//
Query:       CCD26318.1  [L=138]
Description: hypothetical protein NDAI_0H01440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-33  113.6   1.0    6.9e-33  113.0   1.0    1.3  1  Ribosomal_L14e  Ribosomal protein L14
    2.1e-05   24.3   0.3    4.2e-05   23.3   0.3    1.5  1  KOW             KOW motif


Domain annotation for each model (and alignments):
>> Ribosomal_L14e  Ribosomal protein L14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   1.0   7.7e-37   6.9e-33       1      75 []      54     128 ..      54     128 .. 0.99

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 7.7e-37
  Ribosomal_L14e   1 pRqaiplkrlkLtkivlklprgartgavkkawekadveekwaksawakklaarekraaltDFdRFkvmvakkqrr 75 
                     pRq+i+l ++ Lt+++  lprgart++v+k+w +a+v ekw++s+wakk+a+r++raaltDF+RF+vmv++kq+r
      CCD26318.1  54 PRQSINLGQVVLTPLTFALPRGARTSIVAKKWAAAGVCEKWHSSSWAKKIAQRKRRAALTDFERFQVMVLRKQKR 128
                     8************************************************************************97 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.3   4.7e-09   4.2e-05       1      32 []      17      47 ..      17      47 .. 0.96

  Alignments for each domain:
  == domain 1  score: 23.3 bits;  conditional E-value: 4.7e-09
                TTSEEEESSSTTTTCEEEEEEEETTTTEEEEE CS
         KOW  1 pGdhVkVvsGphkGktGkVvkvdqhkvrVfvd 32
                +G++V +  Gp +Gk +++v+++++k +V++d
  CCD26318.1 17 VGRVVLINKGPSAGKLATIVEIIDQK-KVLID 47
                79************************.99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       420  (0.0234257); expected 358.6 (0.02)
Passed bias filter:                      274  (0.0152825); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 981.13
//
Query:       CCD26319.1  [L=435]
Description: hypothetical protein NDAI_0H01450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-88  296.2   1.0    1.3e-79  267.7   0.0    2.0  2  Oxysterol_BP  Oxysterol-binding protein


Domain annotation for each model (and alignments):
>> Oxysterol_BP  Oxysterol-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.7   0.0   7.5e-84   1.3e-79       1     272 [.      50     325 ..      50     329 .. 0.94
   2 !   27.4   0.5   7.7e-11   1.4e-06     313     369 ..     328     384 ..     326     385 .. 0.86

  Alignments for each domain:
  == domain 1  score: 267.7 bits;  conditional E-value: 7.5e-84
                   HHHCCHTTSTT-BCCCS---GGGEEEEEHHHHHHHCCTTCHHHHHHHC.SSHHHHHHHHHHHHHHCCCGCTSTSSSEEE---TT-EEEEEETT...C CS
  Oxysterol_BP   1 slwsilkkciGkDLskislPvffneplSlLqrlaedleyselLdkaakeddsleRlayVaaFalSsyastikrrlkKPFNPlLGEtfelvred...k 94 
                   +++s+lk  +G DLs+i+lP+f++e+ S+L+r++++l++++lL +a++e+++leR++ V++++l++++  + +++kKP+NP+LGE f+ +++    +
    CCD26319.1  50 NIISQLK--PGCDLSRITLPTFILEKKSMLERITNQLQFPDLLLDAHSESNELERFVKVVKWYLAGWHIAP-KAVKKPLNPVLGEHFTAYWDLpnkQ 143
                   589****..**************************************************************.7******************657786 PP

                   EEEEEEEEEETTTTEEEEEEEE..CTEEEEEEEEEEEEE-SSEEEEEE-SEEEEEEEEESEEEEEEE--EEEEE-TTTTS-EEEEEEEEEEEETTT- CS
  Oxysterol_BP  95 gfrfiaEQVsHhPpvsAfhaes..egweldgeikvkskflgkslevkpeGtahlellkksgehYtwtkpttivhniivgklwvelsgeveitnhstg 189
                   +  ++aEQ+sHhPp sA++++   +++++dg   +kskflg+s  +++ G ++l++l+ +ge+Yt+++p+++v++i++gk+ +el++++ i+    +
    CCD26319.1 144 QAFYVAEQTSHHPPESAYFYMIpeSHIRVDGVAIPKSKFLGNSSAAMMAGLTILTFLD-RGEKYTLSQPNMYVRGILFGKMRIELGDHMIIK--GPN 237
                   666*****************999899******************************66.9********************************..899 PP

                   -EEEEEEE---SSS---SSEEEEEEEETTS-EEEEEEEETTTEEEEEETTSTTS--EEEEETT....-..BSXXGCGSSTTBCCCCCCH CS
  Oxysterol_BP 190 dkakleFkkkglfsskksnkvegkvkdkkkevlyeisGkwdeelyikkkktekkeeeedasek....s..kvkekeeqeefeseklWka 272
                   +k +leFk+kg++ s++++ +eg+vkd+k+++ yei+Gkw++ +yik+ +t+ +++ +  +++    s  kv+++eeq e es++lW +
    CCD26319.1 238 YKIDLEFKTKGFI-SGTYDAIEGTVKDNKGKEYYEITGKWNDIIYIKDLRTKGSKKVVLFDTHknfaSkpKVRPIEEQGEYESQRLWDK 325
                   ***********99.59******************************999888777766655554565268*****************87 PP

  == domain 2  score: 27.4 bits;  conditional E-value: 7.7e-11
                   HHHHTT-HHHHHHHHHHHHHHHHHHHHHH.CCTT----SSEEEEETTTTSSCEEEC-S CS
  Oxysterol_BP 313 raleegdideAeeeKkrlEekQRerrker.eekkewkpkwFekekdpdtgeevwkykg 369
                   +al e+d++ A+eeK ++E++QR+ +k+r e+  e++pk+F+k + p ++ ++++yk+
    CCD26319.1 328 KALAERDHEVATEEKFQVENAQRQFAKKRiEDGVEFHPKLFRKAN-PGEDLDYYIYKH 384
                   7899*************************855549******8875.567888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3170.52
//
Query:       CCD26320.1  [L=437]
Description: hypothetical protein NDAI_0H01460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-37  129.0  28.7    1.9e-37  129.0  28.7    2.3  2  TRAM_LAG1_CLN8  TLC domain
    6.6e-21   73.7   2.2    6.6e-21   73.7   2.2    2.2  2  TRAM1           TRAM1-like protein


Domain annotation for each model (and alignments):
>> TRAM_LAG1_CLN8  TLC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   1.3     0.026   2.3e+02     112     153 ..     133     173 ..     115     190 .. 0.72
   2 !  129.0  28.7   2.1e-41   1.9e-37       2     198 .]     193     397 ..     192     397 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.026
  TRAM_LAG1_CLN8 112 flnlrkilsylkkkskssklvlfngllf.llsFfvcRlvllpy 153
                     f+ ++   ++ +++ k++k++ f  ++f +++F+++R +l+ +
      CCD26320.1 133 FVTVSYQVDDTDQYGKGIKDLTF--IFFyMIFFTFLREFLMDV 173
                     66666666777666778899999..555155566778887755 PP

  == domain 2  score: 129.0 bits;  conditional E-value: 2.1e-41
  TRAM_LAG1_CLN8   2 fdervvslvqyllstvfglivlsssp....elwegy.perilgathfllkayyllalgYfiyd.llvlllyekkrkdfvemliHhiitlvllvls 90 
                     + e+++ +++y +s  fgl+++++++    e++++y +   l  ++f +k++yl +++++ ++  +++l  ek rkdf e+++Hhi+tl+l++ s
      CCD26320.1 193 IMEQAFCIIYYGVSGPFGLYIMYHTDlwlfETKTMYrTYPDL-TNSFVYKIFYLGQAAFWAQQaCVLILQLEKPRKDFQELVFHHIVTLLLIWAS 286
                     7899*************************9888888533333.4489****************5444444588999******************* PP

  TRAM_LAG1_CLN8  91 yvrnlgrvglvvlllhelsdpflnlrkilsylkkkskssklvlfngllfllsFfvcRlvllpylillsildvaklslstap.........lwlpl 176
                     yv++++++gl+v++++++sd+fl+l k+l+y  +  +  +  +f  + f+++++++R+++   +il+s+l++++ + + +          + + +
      CCD26320.1 287 YVFHFTKMGLAVYITMDISDFFLALTKTLNYF-NS-RF-TPPVF--VSFMFIWIYLRHYIN-IKILWSVLTEFRTEGNYVLnfatqqykcWISLI 375
                     ********************************.55.33.5789*..***************.56*********97666555************** PP

  TRAM_LAG1_CLN8 177 iflilllvLqllnlyWfylivk 198
                     i +il+++Lql+nlyW++li++
      CCD26320.1 376 ITFILIFALQLVNLYWLFLIFR 397
                     ********************86 PP

>> TRAM1  TRAM1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   2.2   7.3e-25   6.6e-21       1      63 [.     130     187 ..     130     188 .. 0.95
   2 ?   -3.3   1.5      0.82   7.3e+03      34      46 ..     329     341 ..     326     347 .. 0.68

  Alignments for each domain:
  == domain 1  score: 73.7 bits;  conditional E-value: 7.3e-25
       TRAM1   1 tskFifLsynvplsansetglYgkGlkDlafvffyvivftflRaflmeyvlrPlarrlgikkk 63 
                 +++F+++sy+v+     +t++YgkG+kDl f+ffy+i+ftflR+flm+ ++rP   +l+ik+k
  CCD26320.1 130 LHMFVTVSYQVD-----DTDQYGKGIKDLTFIFFYMIFFTFLREFLMDVLIRPCILKLNIKSK 187
                 59*******666.....9*******************************************98 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.82
       TRAM1  34 fyvivftflRafl 46 
                  ++++++ lR  +
  CCD26320.1 329 SFMFIWIYLRHYI 341
                 4577889998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       878  (0.0489709); expected 358.6 (0.02)
Passed bias filter:                      312  (0.017402); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.39
# Mc/sec: 3357.99
//
Query:       CCD26321.1  [L=355]
Description: hypothetical protein NDAI_0H01470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-12   46.6  13.1      3e-10   39.7   3.4    3.5  3  PQ-loop   PQ loop repeat
  ------ inclusion threshold ------
      0.027   14.6   1.4      0.046   13.9   1.4    1.3  1  DUF765    Circovirus protein of unknown function (DUF765)


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   1.4e-05      0.13      21      59 ..      65     103 ..      65     105 .. 0.91
   2 !   39.7   3.4   3.4e-14     3e-10       2      59 ..     259     316 ..     258     318 .. 0.94
   3 ?    0.3   0.2     0.068   6.1e+02      31      42 ..     314     325 ..     312     329 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.4e-05
     PQ-loop  21 iikNykrkSteGlSilflllwllGdilsllylilngfpp 59 
                 ii + k+k + G+Si+ +   l+++il++ y +++ +++
  CCD26321.1  65 IISIEKSKTALGFSIDICATMLIASILRVSYYLITPYEI 103
                 6777799*************************9998876 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 3.4e-14
     PQ-loop   2 seilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngfpp 59 
                 ++++g+++l++++++ +PQi   yk kS +G+ +  l+ wl+Gd+l++ yli+   ++
  CCD26321.1 259 GSTIGSLGLFIESLLPLPQIAILYKLKSIQGFKLILLVSWLCGDTLKITYLIFGAKNI 316
                 7899************************************************977765 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.068
     PQ-loop  31 eGlSilflllwl 42 
                 +++Silf+l+++
  CCD26321.1 314 KNISILFFLFAF 325
                 6899***99987 PP

>> DUF765  Circovirus protein of unknown function (DUF765)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.4   5.1e-06     0.046       2      17 ..      14      29 ..      13      34 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.1e-06
      DUF765  2 ASSTPASPAPSDILSs 17
                ASS PA  AP DI+Ss
  CCD26321.1 14 ASSSPAVTAPNDIISS 29
                9**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       869  (0.048469); expected 358.6 (0.02)
Passed bias filter:                      309  (0.0172346); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2636.60
//
Query:       CCD26322.1  [L=178]
Description: hypothetical protein NDAI_0H01480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-44  151.2   0.2    3.1e-44  150.9   0.2    1.1  1  ARD           ARD/ARD' family
    3.8e-10   39.3   0.0    7.7e-10   38.4   0.0    1.4  1  Cupin_2       Cupin domain
    2.3e-06   27.5   0.0    3.1e-06   27.1   0.0    1.2  1  AraC_binding  AraC-like ligand binding domain
    2.7e-05   23.8   0.0    3.5e-05   23.4   0.0    1.3  1  Cupin_1       Cupin
  ------ inclusion threshold ------
      0.017   14.9   0.0      0.036   13.8   0.0    1.4  1  Cupin_8       Cupin-like domain
       0.07   13.6   0.0       0.13   12.7   0.0    1.5  1  JmjC          JmjC domain, hydroxylase


Domain annotation for each model (and alignments):
>> ARD  ARD/ARD' family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.2     1e-47   3.1e-44       1     157 []       3     156 ..       3     156 .. 0.91

  Alignments for each domain:
  == domain 1  score: 150.9 bits;  conditional E-value: 1e-47
         ARD   1 riyimddseegderlphhtspkekaeelelaklgvlrwkldaddeeeaeeeekilktkeeekkdidvevlkestpnfdeklekFfeEhlhedeeirliv 99 
                 +iy++dd+ + d r+ h++    +++ ++ +klg+   ++      e++++++++++k+++  + +ve  +++++++  kl+ F+eEhlhedeeir++v
  CCD26322.1   3 EIYVHDDKDDIDFRQSHNSG--VSVSPERITKLGIIAGHYRSI--CEVNNLASERNYKNRDCITLNVETFNNEEAQLLAKLNIFYEEHLHEDEEIRYCV 97 
                 59****************99..556666666666555565554..6688999999******************************************** PP

         ARD 100 eGtgyFdvr.skdeawirvlvekGDLivlPagiyhrFtltednkvkalRlFvekekwva 157
                 eG+gyFdv+ +++++wir+ + +GDL+++PagiyhrFtlt+dn++ka+RlF+e++kw a
  CCD26322.1  98 EGSGYFDVKdPTNNEWIRCKLYPGDLLIIPAGIYHRFTLTTDNFIKAVRLFKEEPKWEA 156
                 *********889*********************************************75 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.6e-13   7.7e-10      12      62 ..      84     139 ..      82     146 .. 0.91

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 2.6e-13
                 EEECSSSEEEEEEEEESEEEEEECTE......EEEEETTEEEEE-TT-EEEEEE-SS CS
     Cupin_2  12 pshrHpgedeffyVleGegeltvdge......eveleaGdsvyfpagtpHrfrNtgd 62 
                 ++h H++e e++y++eG g + v +       +++l +Gd++++pag  Hrf  t+d
  CCD26322.1  84 EEHLHEDE-EIRYCVEGSGYFDVKDPtnnewiRCKLYPGDLLIIPAGIYHRFTLTTD 139
                 58******.*************99666678**********************98887 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.1e-09   3.1e-06      14      65 ..      81     138 ..      70     168 .. 0.91

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.1e-09
                   -SEEEETT-SEEEEEEEEE-EEEEETTEE......EEE-TT-EEEE-TTS-EEEEE-T CS
  AraC_binding  14 hsfpphvhdeyvihyvteGtgrlrlngrt......ydlgpGdlfLlppgepHdyesds 65 
                     +++h h+  +i y++eG+g++ +++ t      + l pGdl+++p g  H++   +
    CCD26322.1  81 IFYEEHLHEDEEIRYCVEGSGYFDVKDPTnnewirCKLYPGDLLIIPAGIYHRFTLTT 138
                   5689*************************************************98877 PP

>> Cupin_1  Cupin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.2e-08   3.5e-05      18     102 ..      61     137 ..      47     167 .. 0.79

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 1.2e-08
                 EEESTTTSTTTHSSTEEEEEEEE.TTEEEEEEEESSS-EEEEEEESEEEEEEEETTSS.EEEEEEEETTEEEEE-TT-EEEEEEE CS
     Cupin_1  18 teansenlpglntlgisaarvdlepgglllPhyhpnateiayvlqGegrvgfvvpgngnrdfhkklreGdvfvvPaglvhfqyns 102
                  ++n+e+++  n ++  +a++++    +++ h h   +ei y+++G+g++ +  p n n+ ++ kl +Gd++++Pag+ h +  +
  CCD26322.1  61 ITLNVETFN--NEEAQLLAKLNI----FYEEHLH-EDEEIRYCVEGSGYFDVKDPTN-NEWIRCKLYPGDLLIIPAGIYHRFTLT 137
                 566666664..666666666666....6777999.99******************99.8999999*************9977655 PP

>> Cupin_8  Cupin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.2e-05     0.036     210     235 ..     112     137 ..     100     153 .. 0.79

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.2e-05
     Cupin_8 210 kalevtlnaGevLylPalWfHeVksl 235
                 + ++++l++G+ L +Pa+ +H+ + +
  CCD26322.1 112 EWIRCKLYPGDLLIIPAGIYHRFTLT 137
                 6899*****************98744 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.2e-05      0.13      76     109 ..     109     142 ..      67     147 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 4.2e-05
                 TT---EEEEE-TT-EEEE-TT-EEEEEESSSEEE CS
        JmjC  76 egipvyrfvqkpgefVfvfpgayHsvfnlgfnia 109
                  + + +r++  pg+++++++g yH    + +n+ 
  CCD26322.1 109 TNNEWIRCKLYPGDLLIIPAGIYHRFTLTTDNFI 142
                 5557899*****************9888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 1337.34
//
Query:       CCD26323.1  [L=444]
Description: hypothetical protein NDAI_0H01490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-06   28.6   6.7    1.1e-06   28.6   6.7    2.7  3  bZIP_1           bZIP transcription factor
  ------ inclusion threshold ------
      0.057   13.4   0.0       0.18   11.8   0.0    1.9  1  Fer2_2           [2Fe-2S] binding domain
       0.44   10.9  10.2       0.61   10.5   1.2    2.6  2  Opy2             Opy2 protein
        4.2    7.5  25.2      0.066   13.3   9.9    3.2  3  bZIP_2           Basic region leucine zipper


Domain annotation for each model (and alignments):
>> bZIP_1  bZIP transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   6.7   2.5e-10   1.1e-06       8      55 ..      80     127 ..      77     136 .. 0.93
   2 ?   -0.6   0.2      0.33   1.5e+03      33      53 ..     133     153 ..     131     156 .. 0.72
   3 ?   -3.7   0.1       3.1   1.4e+04      20      26 ..     430     436 ..     428     439 .. 0.66

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 2.5e-10
                 XXX--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   8 krkqkNReaArrsRqRKqaeieeLerrvkaLekeNksLkseleelkke 55 
                 k+k++NR a+r++R+RK  ++++Le+ v+ L+   k+ +++ ++++k 
  CCD26323.1  80 KKKIQNRDAQRAYRERKANRMKNLEDTVDSLQILVKTWQQKYKNIEKR 127
                 9*******************************9999999999999885 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.33
                 HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  33 rrvkaLekeNksLkseleelk 53 
                 ++++  +keN+ Lk+ l ++k
  CCD26323.1 133 KKFEDSTKENQILKESLLQMK 153
                 566666788888888877766 PP

  == domain 3  score: -3.7 bits;  conditional E-value: 3.1
                 HHHHHHH CS
      bZIP_1  20 sRqRKqa 26 
                 sR RKq+
  CCD26323.1 430 SRIRKQM 436
                 5777776 PP

>> Fer2_2  [2Fe-2S] binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.1e-05      0.18      22      46 ..     315     339 ..     293     379 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 4.1e-05
      Fer2_2  22 egasqCGyCtpGfvmsaaalleene 46 
                 ++as+CG+C  G  + + +l + ++
  CCD26323.1 315 HSASKCGFCNEGTSCVCNELEATEN 339
                 679**********999999855543 PP

>> Opy2  Opy2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   2.1      0.01        46       7      23 ..     316     332 ..     313     338 .. 0.84
   2 ?   10.5   1.2   0.00014      0.61      18      32 ..     377     391 ..     375     393 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.01
        Opy2   7 sapsCPsCpsgeeCvlt 23 
                 sa +C  C++g++Cv  
  CCD26323.1 316 SASKCGFCNEGTSCVCN 332
                 5789**********975 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00014
        Opy2  18 eeCvltaqtCtsCak 32 
                   C+ t+++Ct+Ca 
  CCD26323.1 377 SHCSATPESCTKCAN 391
                 68***********96 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   9.9   1.5e-05     0.066       3      53 ..      75     126 ..      73     127 .. 0.90
   2 ?    5.0   0.6    0.0056        25      31      52 ..     132     153 ..     130     154 .. 0.91
   3 ?   -3.3   1.1       2.3     1e+04      19      31 ..     430     442 ..     430     444 .] 0.74

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
                 XXXXXXXX.XXXXXXXX-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2   3 deyrerRr.kNreAarrsRekkkakeeeleervkeLeeeNaqLrqkveqLek 53 
                 +e++ +++ +Nr A r +Re+k  ++++le++v +L+    + +qk+++ ek
  CCD26323.1  75 NEDEMKKKiQNRDAQRAYRERKANRMKNLEDTVDSLQILVKTWQQKYKNIEK 126
                 577788888****************************999999999988876 PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0056
                 HHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  31 eervkeLeeeNaqLrqkveqLe 52 
                 e++ ++ ++eN+ L++ + q++
  CCD26323.1 132 EKKFEDSTKENQILKESLLQMK 153
                 8899999************998 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.3
                 -HHHHHHHHHHHH CS
      bZIP_2  19 sRekkkakeeele 31 
                 sR +k + +++  
  CCD26323.1 430 SRIRKQMQKNDSM 442
                 7999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2115  (0.117965); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.40
# Mc/sec: 3317.06
//
Query:       CCD26324.1  [L=272]
Description: hypothetical protein NDAI_0H01500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       561  (0.0312901); expected 358.6 (0.02)
Passed bias filter:                      290  (0.0161749); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2279.47
//
Query:       CCD26325.1  [L=156]
Description: hypothetical protein NDAI_0H01510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-19   69.4   3.5    3.8e-19   68.8   3.5    1.3  1  Rpr2      RNAse P Rpr2/Rpp21/SNM1 subunit domain


Domain annotation for each model (and alignments):
>> Rpr2  RNAse P Rpr2/Rpp21/SNM1 subunit domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   3.5   2.1e-23   3.8e-19       1      89 [.      34     126 ..      34     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 2.1e-23
                 HHHHHHHHHH.....HHHHH-HHHHHHHHHHHHHHHHHCT---SSTCCCTB-TTT--B--CTTTEEEEEE-SSS.-E.........EEEEETTT CS
        Rpr2   1 rlnfLyqaahl....qlaeaspalsrylakqlrevskkaqlrlppsvkrtvCkkCgsvlipgvtcsvrvenksk.kkkkkkkkadvlvvtClaC 89 
                 rln+Lyq++++      +++++ l+r ++k+l+ +skk++++++p++kr++CkkC+ +lip +t+++ ++n s+ k+kk ++k+dvl  +C +C
  CCD26325.1  34 RLNYLYQLSTWttmtGIQPNQNGLARLYSKDLDLISKKTKTSISPNMKRSICKKCHRILIPTITSKTIIKNLSTsKSKKVNPKNDVLECHC-QC 126
                 9**********88887788999*************************************************55404456788889977777.56 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       867  (0.0483574); expected 358.6 (0.02)
Passed bias filter:                      355  (0.0198003); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1189.66
//
Query:       CCD26326.1  [L=252]
Description: hypothetical protein NDAI_0H01520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-56  189.9   0.0      4e-56  189.5   0.0    1.1  1  Proteasome      Proteasome subunit
    2.6e-13   49.4   0.2    5.8e-13   48.3   0.1    1.7  2  Proteasome_A_N  Proteasome subunit A N-terminal signature


Domain annotation for each model (and alignments):
>> Proteasome  Proteasome subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.5   0.0   4.4e-60     4e-56       1     190 []      27     215 ..      27     215 .. 0.96

  Alignments for each domain:
  == domain 1  score: 189.5 bits;  conditional E-value: 4.4e-60
                 HHHS-EEEEEEETTEEEEEEEEEEEETTEEEESSSS.TSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHHH CS
  Proteasome   1 vkkGttvvGikgkdgvvlaadkratagskllskstv.eKifkiddhigvafaGlaaDartlvrraraeaqlyrlrygrpipverlvarvaaklqaytqr 98 
                 vk+Gt++vGikgk++vvl++++r+t   kl++++   +Ki+kid h++++f+Gl aD r+l+++ar eaq++rl+ ++p++ve+l++++a  +q+ytq+
  CCD26326.1  27 VKRGTCAVGIKGKNCVVLGCERRST--LKLQDPRITpSKISKIDSHLVLSFSGLNADSRILIEKARIEAQSHRLTLEDPVTVEYLTRYIAGVQQRYTQS 123
                 79***********************..*****995359************************************************************* PP

                 CTTTTTSEEEEEEEEE.TTTEEEEEEEETTSEEEEESSEEEESTTHHHHHHHHHHHH...STTBSHHHHHHHHHHHHHHHHHHBTTSCSSEEEEEE CS
  Proteasome  99 sgrrpfgvslliagvd.eeggpeLyqidpsGsyieekdavaiGsgseaaktalekey...kedltleeavelavkalkealerdklsgknievavi 190
                 +g+rpfgvs+liag+d ++++p+Lyq++psG y ++  a +iG +s+ ++++lek+y   ++  +++e+v+l v++l e+++   ++ knie++v+
  CCD26326.1 124 GGVRPFGVSTLIAGFDpRDDKPKLYQTEPSGIYSSW-TAQTIGRNSKTVREFLEKNYnreEPPENVDECVRLTVRSLLEVVQ---TGAKNIEITVV 215
                 ****************9999****************.5*******************988888999999***9999999999...88999999886 PP

>> Proteasome_A_N  Proteasome subunit A N-terminal signature
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.1   6.5e-17   5.8e-13       1      23 []       4      26 ..       4      26 .. 0.99
   2 ?   -2.7   0.0      0.55     5e+03      13      18 ..     146     151 ..     146     151 .. 0.85

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 6.5e-17
  Proteasome_A_N  1 YDrslttFSPdGRLfQVEYAmkA 23
                    YDr+l++FSPdG++fQVEYA++A
      CCD26326.1  4 YDRALSIFSPDGHIFQVEYALEA 26
                    **********************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.55
  Proteasome_A_N  13 RLfQVE 18 
                     +L+Q E
      CCD26326.1 146 KLYQTE 151
                     79**87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1931  (0.107703); expected 358.6 (0.02)
Passed bias filter:                      761  (0.0424452); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 1855.42
//
Query:       CCD26327.1  [L=175]
Description: hypothetical protein NDAI_0H01530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-32  111.4   0.0      3e-32  110.9   0.0    1.2  1  RNase_P_Rpp14  Rpp14/Pop5 family
  ------ inclusion threshold ------
        1.3    9.5   4.5        1.1    9.7   2.3    2.2  2  FlaC_arch      Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> RNase_P_Rpp14  Rpp14/Pop5 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   0.0   3.3e-36     3e-32       1     103 []       7     129 ..       7     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 110.9 bits;  conditional E-value: 3.3e-36
                    EEEEEEEEESS.........................-HHHHHHHHHHHHHHHHHHHHHHH--..EEEEEETTTTEEEEEEEGGGHHHHHHHHHT-- CS
  RNase_P_Rpp14   1 RYllveilypdeee...................elteksllkairesvqelfGdyglgklgsslsvkyfspatstaiiRcsresyrlvwaaLtlit 77 
                    RY+l+e+l+p++e+                   + t k ll++ir+s+q +fGdyg+g+++s l++kyfs+atst+iiRc re+++l++a+L +it
     CCD26327.1   7 RYILFEVLSPRQEQpssdsindiflnhhratskQGTIKVLLQEIRRSLQLNFGDYGSGRVNSMLQIKYFSNATSTGIIRCLREDCELLIASLFFIT 102
                    9**********84467788999999999775533444*********************************************************** PP

                    EETTEE.EEEEEEEEESSHHHHHHHTT CS
  RNase_P_Rpp14  78 kiegrp.vvfrvvrvsGTikkaeeeai 103
                    k++  + +++++++vsGTikk+e++ai
     CCD26327.1 103 KLGPIEgILLNPIKVSGTIKKIEQHAI 129
                    **765559****************997 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.1   9.4e+03      18      30 ..      42      54 ..      36      55 .. 0.61
   2 ?    9.7   2.3   0.00012       1.1       2      35 ..     121     155 ..     120     174 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 1.1
   FlaC_arch 18 tvkkeneelsksv 30
                t+k  ++e++ s+
  CCD26327.1 42 TIKVLLQEIRRSL 54
                5555566666654 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00012
   FlaC_arch   2 idelEnk.lsklsteletvkkeneelsksveelke 35 
                 i+++E+  + + s +l+t+ k n+++s++++++ +
  CCD26327.1 121 IKKIEQHaIARNSKSLSTISKHNQKISDDLKKIVQ 155
                 56777643889999****************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       985  (0.0549389); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 1271.77
//
Query:       CCD26328.1  [L=398]
Description: hypothetical protein NDAI_0H01540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-37  127.2   0.8    4.4e-37  127.2   0.8    1.9  2  SKIP_SNW  SKIP/SNW domain


Domain annotation for each model (and alignments):
>> SKIP_SNW  SKIP/SNW domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.2   0.8   2.5e-41   4.4e-37      21     140 ..     122     242 ..     102     257 .. 0.87
   2 ?   -1.7   0.4      0.11     2e+03     121     155 ..     267     301 ..     263     304 .. 0.79

  Alignments for each domain:
  == domain 1  score: 127.2 bits;  conditional E-value: 2.5e-41
    SKIP_SNW  21 riikivekqeDPleppkfkhkkvpagpesppv.pvlhsppr.kltkeeqekwkIPpaiSnwkNpkGytipLdkRlaadgrglqeveindkFaklseaLe 117
                   ++ive+ +DPl+p++ k +k++a+ + ++v p+ +s+++ kltkee +kw+IP+aiS wkNp+Gyti+LdkRl  + r+l  +e+++kF++ls+aLe
  CCD26328.1 122 VEMEIVEAVQDPLQPSRKKFRKAVAPISGEEVtPIYNSSNEkKLTKEEIRKWNIPSAISAWKNPNGYTISLDKRLGGK-RSLAPNEVSSKFTDLSDALE 219
                 345789*************99999988777777***998877*********************************987.699999************** PP

    SKIP_SNW 118 eAerkareevklraelkkklaek 140
                  A+++aree++ r+e +k la +
  CCD26328.1 220 LADKRAREELSHRNERRKLLASH 242
                 ***************99988765 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.11
    SKIP_SNW 121 rkareevklraelkkklaekekeekeeklrelaek 155
                 ++a+ + ++++ + +  + ++k+   ++lr+la  
  CCD26328.1 267 EHAKIKAEEKELVSRYGERRNKNDVAQRLRKLAYA 301
                 56777778888888888899999999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       879  (0.0490267); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2914.47
//
Query:       CCD26329.1  [L=116]
Description: hypothetical protein NDAI_0H01550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       210  (0.0117129); expected 358.6 (0.02)
Passed bias filter:                      171  (0.00953762); expected 358.6 (0.02)
Passed Vit filter:                         6  (0.000334653); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 829.80
//
Query:       CCD26330.1  [L=741]
Description: hypothetical protein NDAI_0H01560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-15   56.1   0.3    1.2e-09   38.0   0.1    2.6  2  Cellulase        Cellulase (glycosyl hydrolase family 5)
      1e-13   51.6   0.0    2.3e-13   50.5   0.0    1.6  1  Glyco_hydro_5_C  Glycoside hydrolase family 5 C-terminal doma
    2.6e-05   24.0   0.0      5e-05   23.1   0.0    1.4  1  Glyco_hydro_35   Glycosyl hydrolases family 35
  ------ inclusion threshold ------
      0.019   14.3   0.2      0.094   12.0   0.0    2.1  2  Glyco_hydro_42   Beta-galactosidase
      0.022   13.7   0.0      0.039   12.9   0.0    1.3  1  Glyco_hydro_14   Glycosyl hydrolase family 14


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.1   3.3e-13   1.2e-09      27     133 ..      74     264 ..      62     272 .. 0.79
   2 !   15.2   0.0   2.9e-06     0.011     147     280 ..     397     564 ..     381     565 .. 0.72

  Alignments for each domain:
  == domain 1  score: 38.0 bits;  conditional E-value: 3.3e-13
                 HHHHHHHT-SEEEEEEECTGGTTSSTTTGCTHHHHHHHHHHHHHHHHT.T-EEEEEEESS...........TTT....................CSSSS CS
   Cellulase  27 idevkdagfntvRlpvswgelvenapdykvdenslerveevvkyaken.glyvildiHse...........egw....................ltkad 93 
                 i ++k+ g+nt+R+p++w+++ +++p+ ++d ++++ v +++k + e  g+yv ld+H++           + w                    +    
  CCD26330.1  74 INKIKSLGYNTIRFPFTWESIEHEGPG-QYDFQYMDYVIKFLKKINEIgGIYVYLDPHQDvwsrfcggsgaPIWtlycagfqparfrnteaailH---- 167
                 6899**************888876776.5****************98637*********977777777776444655555333333333333332.... PP

                 TTTTHHHHHHH...................................................................HHHHHHHHHHHHTTTTTTEEE CS
   Cellulase  94 gnssedtaeef...................................................................fkklwtqiAerykkndevvif 125
                                                                                               f + ++ +A ++  n+ +++ 
  CCD26330.1 168 ----------NyfinnrdinqpneqypkmlwptnyyrlacqtmftlffggkmfaprclingvniqdylqdcfgnavmtFYTRIRSVAPELFENNCIIGL 256
                 ..........1444444555555558888999999999999999999999999999999999999999999999999955569999999989999**** PP

                 ESSSS--S CS
   Cellulase 126 elmNEPhg 133
                 e +NEP++
  CCD26330.1 257 ESLNEPNC 264
                 ******98 PP

  == domain 2  score: 15.2 bits;  conditional E-value: 2.9e-06
                 HHHHHHHHHHHHHHHHTTSSEEEEECHHHHTBHHHHHCTSGSSSSTTEEEEEEEETTTH.HHTGCGS..........................HSCTHH CS
   Cellulase 147 evkayaeeaikaIRavgpnrliivegnswsgnldgavlndPndsqdnliysvHfYgpsd.faqtefg..........................kdltdk 218
                    +y+e+     R+++++ l++++ + +++ ++ +   + + ++++++++ HfY++     +t+++                          +  ++ 
  CCD26330.1 397 HFVEYYENLHSRFREIDKEALLFLQPPVFKEPPKIKD--T-SLIDNRTVCACHFYDGLSlMFKTWNKyfnvntfgivrkkysnpifslvlgegNIRKCF 492
                 5566666777777777777777777766666555522..2.2268***********665145677779***********************99666777 PP

                 HHHHHHHHHHHHHHHHTTSEEEEEEEESS....TTSSH.........HHHHHHHHHHHHHHHTTTEEEEEEESSS CS
   Cellulase 219 tnlaqrledaakylvekgipviigEfGgs....nadgd.........lakeeaekwldylkekgiswiyWslnpk 280
                  +  ++++d  k l+  g+p++ +E G      +   +         l+++++++   +l+++++s+++W+++ +
  CCD26330.1 493 ESQLKEMKDEVKFLLGDGVPAFFTEIGMPfdmeD---KaaytsndysLQRAAMDSLGYALEKNHFSFSLWCYSTE 564
                 77789999999****************8885441...34443322444444444445555888********9865 PP

>> Glyco_hydro_5_C  Glycoside hydrolase family 5 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   6.4e-17   2.3e-13       1      78 [.     637     714 ..     637     721 .. 0.83

  Alignments for each domain:
  == domain 1  score: 50.5 bits;  conditional E-value: 6.4e-17
  Glyco_hydro_5_C   1 RPyPakvaGtplsfsfdlktgeftlewt.adkssaedseTeIflPelhyp.kgrkvevsggkweydeerqtlyvvwahse 78 
                      RP+P+k++G  +s +f l++ ++tl++   ++s +++s T IflP++h+p k   v+ s+g+++yd + q+l+ v  h++
       CCD26330.1 637 RPFPIKIHGHFQSAEFQLENLTYTLRIFgRKTSDTSKSATYIFLPAYHFPlKSLLVTSSSGSFSYDPKYQVLTWV--HNA 714
                      9*************************984555555666************899999999******7776666655..554 PP

>> Glyco_hydro_35  Glycosyl hydrolases family 35
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.4e-08     5e-05      28     100 ..      72     147 ..      63     167 .. 0.81

  Alignments for each domain:
  == domain 1  score: 23.1 bits;  conditional E-value: 1.4e-08
                     HHHHHHHHCT-SEEEEE--HHHH-SC.TTB---SGGG-CHHHHHHHHHC.T-EEEEEEES---TTBGGG.G--GGG CS
  Glyco_hydro_35  28 dvlekvkalGlnaietYveWnlhepk.egkydfeGaldlekFlklaqea.gLyvilRpGpYicaEwdaG.GlpaWl 100
                      +++k+k+lG+n+i++ + W   e + +g+ydf+ +  + kFlk ++e  g+yv l p   + +    G G p+W 
      CCD26330.1  72 LHINKIKSLGYNTIRFPFTWESIEHEgPGQYDFQYMDYVIKFLKKINEIgGIYVYLDPHQDVWSRFCGGsGAPIWT 147
                     5799****************98887659******************997369999988766666655555666665 PP

>> Glyco_hydro_42  Beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.6e-05     0.094      10      65 ..      68     127 ..      62     149 .. 0.78
   2 ?   -1.0   0.1      0.24   8.5e+02     188     228 ..     375     415 ..     372     425 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 2.6e-05
                     CHHHHHHHHHHHHT--EEEE-TT-HHHH-SB.TTB---HHHHHHHHHHHCT....T-EEEE CS
  Glyco_hydro_42  10 eaweedirlmkeagvnvvrlgefaWaklePe.egkydFewLdevldlleka....gikviL 65 
                     e +e  i+++k +g n++r   f W+ +e e  g+ydF+++d v++ l+k     gi+v L
      CCD26330.1  68 EEVELHINKIKSLGYNTIR-FPFTWESIEHEgPGQYDFQYMDYVIKFLKKIneigGIYVYL 127
                     567778999**********.78*******9857************9998752222566666 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.24
                     S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT CS
  Glyco_hydro_42 188 PselseeenpskildykrFssdqilefvkaeaeilreyspd 228
                     P  +s++   ++++d + F ++  +e++++  + +re+ ++
      CCD26330.1 375 PDYFSKNDVTNENIDDHYFINNHFVEYYENLHSRFREIDKE 415
                     77788888888999999999999999999999999998876 PP

>> Glyco_hydro_14  Glycosyl hydrolase family 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   1.1e-05     0.039      16      64 ..      68     116 ..      58     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.1e-05
  Glyco_hydro_14  16 ealekdlralkqnGveaitvdvwwGlvekdGdqqfdfsyykelaqavkk 64 
                     e +e +++ +k+ G+++i   + w  +e++G+ q+df+y++ +++ +kk
      CCD26330.1  68 EEVELHINKIKSLGYNTIRFPFTWESIEHEGPGQYDFQYMDYVIKFLKK 116
                     5667788999*****************************9998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       382  (0.0213063); expected 358.6 (0.02)
Passed bias filter:                      333  (0.0185733); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 5166.77
//
Query:       CCD26331.1  [L=414]
Description: hypothetical protein NDAI_0H01570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.6e-65  218.1   0.8    1.2e-64  217.6   0.8    1.2  1  DNA_primase_S  DNA primase small subunit
    0.00082   19.3   1.4     0.0019   18.1   1.4    1.6  1  DUF2205        Short coiled-coil protein


Domain annotation for each model (and alignments):
>> DNA_primase_S  DNA primase small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.6   0.8   1.3e-68   1.2e-64       1     176 [.     116     349 ..     116     350 .. 0.96

  Alignments for each domain:
  == domain 1  score: 217.6 bits;  conditional E-value: 1.3e-68
                    EEEEEETTT-.....TT--HHHHHHHHHHHHHHHHHHHH-----GGGEEEEE--SEEEEEEE--TTEEES-HHHHHHHHHH............... CS
  DNA_primase_S   1 FDiDmddydd....cseatvcekcwkfvsvavkvldellredfgfkdilwvfsgrrGfHcwvsdkdarpltdeeraaivnylnly........... 81 
                    FDiDmddyd+    cs+a+vcekcwkf+s+a++v++++l edfg++d++wvfsgrrG+Hcwvsdk+ar l+d +r+++ +yln++           
     CCD26331.1 116 FDIDMDDYDTfrtcCSGAQVCEKCWKFISLAMSVINTSLMEDFGYEDFIWVFSGRRGAHCWVSDKRARILNDLQRRNVLEYLNVVrdrtaskrlal 211
                    9***************************************************************************************99999999 PP

                    ....................................HCHHHHCT--------............................................ CS
  DNA_primase_S  82 .rplhpflsrsmlkivkpvveeiileeqdpf.....eikkllrllpdkslre..kkkw....................................ea 133
                     rp hp+lsrs l+ +kp++++iil+eq+p+     + + ll  l dk+l e  k +w                                    e 
     CCD26331.1 212 kRPYHPHLSRS-LDQLKPYFVDIILKEQNPWqndehALDTLLPGLYDKQLIEnlKRYWkenpnrsstekwndidiiaskdlkaskkqdvinrlrEC 306
                    999********.*********************9998888888888888888997777777777777777************************** PP

                    ............-----------------....---------. CS
  DNA_primase_S 134 kedivlvllyprldeqvtkgikhllkapfcihgktgnvcvpld 176
                    ked v + lyp+ld++vtk+++hllkapfcih++tgnvcvp+d
     CCD26331.1 307 KEDLVIAALYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPID 349
                    *****************************************97 PP

>> DUF2205  Short coiled-coil protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   1.4   2.1e-07    0.0019       8      54 ..     365     412 ..     362     413 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.1e-07
     DUF2205   8 edveklerearerLqqqakeLqssLqaLaer.vdeVkeehdKLesenr 54 
                 +++ek ++ ++++Lq  ++++q   ++++++ v++Vk  hd Le+enr
  CCD26331.1 365 NEIEKDHNSEKTTLQPFIEKFQIFVNSVINHeVENVKRGHDSLENENR 412
                 79*********************999876544***************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      594  (0.0331307); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.24s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3049.43
//
Query:       CCD26332.1  [L=909]
Description: hypothetical protein NDAI_0H01580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.4e-09   37.1   8.8    4.3e-09   36.3   8.8    1.4  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   8.8   2.4e-13   4.3e-09       1      38 [.      25      68 ..      25      70 .. 0.91

  Alignments for each domain:
  == domain 1  score: 36.3 bits;  conditional E-value: 2.4e-13
                SS-HHHHHCT---ST...SSSS...-HHHHHCTHHHCCCCTCCC CS
     Zn_clus  1 haCdnCrkkKvKCda...kkPa...CsnCkklnleCtfysessk 38
                +aC+nC+ +KvKCd+   ++P+   C++C++ +++C+f + + +
  CCD26332.1 25 KACTNCKLRKVKCDMgplENPHdppCARCRREGKTCVFLTTKGR 68
                59****************9999999************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       652  (0.0363657); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.45
# Mc/sec: 6098.33
//
Query:       CCD26333.1  [L=371]
Description: hypothetical protein NDAI_0H01590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1656  (0.0923643); expected 358.6 (0.02)
Passed bias filter:                      479  (0.0267165); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.22s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2724.17
//
Query:       CCD26334.1  [L=842]
Description: hypothetical protein NDAI_0H01600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-20   72.7   0.9    2.2e-20   72.7   0.9    2.8  3  AMPKBI     5'-AMP-activated protein kinase beta subunit, inte
      7e-09   35.8   0.0    1.9e-08   34.4   0.0    1.8  1  AMPK1_CBM  Glycogen recognition site of AMP-activated protein


Domain annotation for each model (and alignments):
>> AMPKBI  5'-AMP-activated protein kinase beta subunit, interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       1.5   1.3e+04       9      34 ..     188     213 ..     182     226 .. 0.60
   2 ?   -1.8   0.1      0.42   3.8e+03      20      35 ..     511     526 ..     449     542 .. 0.73
   3 !   72.7   0.9   2.5e-24   2.2e-20       6      75 .]     753     830 ..     749     830 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 1.5
      AMPKBI   9 PphLekvllnkssdsaassaddssvl 34 
                 P  L+k++  +s+ ++ s++++ss+l
  CCD26334.1 188 PSDLSKTVSTSSNCQSFSTESSSSAL 213
                 67788777777444444444444433 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.42
      AMPKBI  20 ssdsaassaddssvlp 35 
                 s++++++ ++d+++lp
  CCD26334.1 511 SKRKSNTNNNDNNTLP 526
                 4556667777777777 PP

  == domain 3  score: 72.7 bits;  conditional E-value: 2.5e-24
      AMPKBI   6 pklPphLekvllnk.......ssdsaassaddssvlp.........iPnhvvLnHLltssikngvlavgcttRYrkKyvTtvlYkP 75 
                 p lP +L++++lnk       +++++        +lp         i  hv+LnHLltssi++++++v+cttRY++K++T+v+Y+P
  CCD26334.1 753 PDLPIYLNSTYLNKiftqfqkQHNDP--------TLPasssiglthIIPHVNLNHLLTSSIRDEIISVACTTRYQGKFITQVMYAP 830
                 77************666665522222........233344444444455***********************************99 PP

>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.1e-12   1.9e-08      35      80 ..     536     581 ..     517     586 .. 0.86

  Alignments for each domain:
  == domain 1  score: 34.4 bits;  conditional E-value: 2.1e-12
   AMPK1_CBM  35 dfsvilkLpeGthqykFiVDgewrvdpdlptatdeeGnlnNvievk 80 
                  +   l+Lp+G +++kF +++++++++ lptatd++Gn++N+ ev 
  CCD26334.1 536 WYMPNLTLPPGIYRLKFSINNDITHSNFLPTATDSMGNIVNWFEVL 581
                 5666799************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1043  (0.0581739); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.42
# Mc/sec: 6007.64
//
Query:       CCD26335.1  [L=519]
Description: hypothetical protein NDAI_0H01610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-09   37.1   1.1      3e-09   37.1   1.1    3.6  3  PAP1             Transcription factor PAP1
  ------ inclusion threshold ------
       0.25   12.4   6.3       0.53   11.3   6.3    1.4  1  Rib_recp_KP_reg  Ribosome receptor lysine/proline rich region
       0.26   10.5   3.2       0.48    9.6   3.2    1.4  1  Peptidase_U57    YabG peptidase U57


Domain annotation for each model (and alignments):
>> PAP1  Transcription factor PAP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.1  20.9         3   1.8e+04      62     148 ..      89     176 ..      34     211 .. 0.45
   2 ?   -4.4  10.3       2.1   1.3e+04      46     131 ..     299     383 ..     229     449 .. 0.51
   3 !   37.1   1.1     5e-13     3e-09     317     368 ..     456     514 ..     433     517 .. 0.76

  Alignments for each domain:
  == domain 1  score: -6.1 bits;  conditional E-value: 3
        PAP1  62 tsttssvesasasssesknqrsnslealtkednnnys.nsaanegltrgsta.ssaes.qsstysansgtstssdSPsssseshqgqlSS 148
                 +  +++++ ++ s+++++  + ++ ++++++++n+   n++ +++ + gs+  s+++s   ++++a++ +  s +SP s   s+++++SS
  CCD26335.1  89 QFHEEEQKQEQVSHEKNS--HLSDTNTTNNTNTNQLPaNQVPSPNESSGSSIvSNTSSpIINKTNASNFKIDSFNSPISVPISTTNNNSS 176
                 111122222222222211..1222222222222222223333333333332211111101222222223333345555555555544444 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 2.1
        PAP1  46 aaaskeesaaPstsaststtssvesasasssesknqrsnslealtkednnnysnsaanegltrgsta..ssaesqsstysansgtsts 131
                 +  sk++s+  s+++s   t++ +++++ s       +++++   ++d+n+ ++s +n ++  +st    s+ +++  + ++ gt +s
  CCD26335.1 299 NIISKSNSSLTSPAQSLMLTNTWDTNNSPS---LDGIDTDNNIYVNDDSNKDTASIMNVRPIIDSTLafPSTMTENDLFAQRYGTMQS 383
                 111122222223333333333333332222...2222334444444444444444444444433333223333334444444444444 PP

  == domain 3  score: 37.1 bits;  conditional E-value: 5e-13
        PAP1 317 mltCtkiWdrlqsmekfrn......geiDvDsLCseLrtKArCSegGv.Vvnqkdvedi 368
                   +C+kiW+r+++  ++         + D+D+LC eL tKArCS +G  V++  d+++ 
  CCD26335.1 456 FAKCSKIWERINNKMNIETnsgprfKDSDIDDLCNELMTKARCSTNGSiVIKTGDIKQS 514
                 568********9876654311111146799***************99725677788765 PP

>> Rib_recp_KP_reg  Ribosome receptor lysine/proline rich region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   6.3   8.8e-05      0.53      35     116 ..      74     153 ..      72     181 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 8.8e-05
  Rib_recp_KP_reg  35 ekKkkakkKedkpngkipEsestqepaeekseseaevvveaepaPvvaaapaavaePvkeeevkakaakaapapvlaqksap 116
                      ekK k+++  +++  +  E+e++qe+++++ +s++  ++ ++   +  + + +v+ P   e+  ++ ++++++p +++++a+
       CCD26335.1  74 EKKRKEREEREQQQQQFHEEEQKQEQVSHEKNSHLSDTNTTNNTNTNQLPANQVPSPN--ESSGSSIVSNTSSPIINKTNAS 153
                      8999999999******************888888877777777776777778888887..7788888999999998877776 PP

>> Peptidase_U57  YabG peptidase U57
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.2     8e-05      0.48       9     101 ..      26     121 ..      21     129 .. 0.54

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 8e-05
  Peptidase_U57   9 kSygkDilfkvieikkeeekkiaiLkGlevR...liadapldD.Lekveeeevkekk.kkleekveeslkkllkerkeeeekkkkkekkekekeea 99 
                    +Sy +D++ +v++++ ++ ++  iLk l++R   +  + p  D L ++e+++ ++++ ++++++ +e+ +k   e+ ++e++++ +++++++++++
     CCD26335.1  26 RSYMTDLINEVNKFRPKNTTDSKILKYLSMRnthMHNNPPNIDtLLELEKKRKEREErEQQQQQFHEEEQKQ--EQVSHEKNSHLSDTNTTNNTNT 119
                    79*************99**********999943344444444424444433333222022222222222222..2222222333344444444444 PP

  Peptidase_U57 100 fe 101
                     +
     CCD26335.1 120 NQ 121
                    44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2989  (0.166713); expected 358.6 (0.02)
Passed bias filter:                      772  (0.0430587); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.32s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 3539.52
//
Query:       CCD26336.1  [L=98]
Description: hypothetical protein NDAI_0H01620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-33  115.1   0.0    1.6e-33  114.9   0.0    1.1  1  Dynein_light  Dynein light chain type 1
     0.0016   19.1   0.0     0.0025   18.5   0.0    1.3  1  Ground-like   Ground-like domain


Domain annotation for each model (and alignments):
>> Dynein_light  Dynein light chain type 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.9   0.0   1.8e-37   1.6e-33       3      86 .]      16      97 ..      14      97 .. 0.97

  Alignments for each domain:
  == domain 1  score: 114.9 bits;  conditional E-value: 1.8e-37
                  EEEEEEE-HHHHHHHHHHHHHHHHH-SSHH..HHHHHHHHHHHHHH-S-EEEEEEEEEEEEEEEETTEEEEEEETTEEEEEEE- CS
  Dynein_light  3 vikeadmseemqeeaielakealekfkkekekdiaayikkeldkkygptWhciVgksfgssvthekghfiyfyigklaillfKt 86
                   ik++d+s+e+++e++++ ++a+e+++ e+  dia++ikk+ld +yg+tW++iVgk+fgs+vthekghf+yfyig la+l+fKt
    CCD26336.1 16 IIKASDISDELKDEILNISQDAIENNELER--DIASSIKKQLDTRYGTTWNVIVGKNFGSYVTHEKGHFLYFYIGPLAFLIFKT 97
                  599*********************988877..***************************************************8 PP

>> Ground-like  Ground-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.8e-07    0.0025       6      54 ..      23      76 ..      22      82 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.8e-07
  Ground-like  6 nseLkkiie....enm.kqssasdskkaiqkaleekfgssfevicsegdfsyti 54
                 + eLk+ i+    +++ +++  +d++ +i+k+l +++g++++vi+ ++  sy +
   CCD26336.1 23 SDELKDEILnisqDAIeNNELERDIASSIKKQLDTRYGTTWNVIVGKNFGSYVT 76
                 57899988855543447788899*************************999944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       986  (0.0549947); expected 358.6 (0.02)
Passed bias filter:                      649  (0.0361983); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 725.66
//
Query:       CCD26337.1  [L=413]
Description: hypothetical protein NDAI_0H01630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-16   59.2   4.3    4.7e-16   58.1   4.3    1.7  1  Rpn9_C           Rpn9 C-terminal helix
    1.7e-14   54.2   0.6    1.7e-14   54.2   0.6    2.2  2  PCI              PCI domain
     0.0049   16.9   1.1      0.013   15.5   0.2    2.1  2  CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
  ------ inclusion threshold ------
       0.08   12.9   1.2       0.16   12.0   1.2    1.4  1  DUF236           DUF236 repeat
       0.16   11.2   0.1       0.27   10.4   0.1    1.3  1  DUF2800          Protein of unknown function (DUF2800)
        5.4    6.6  10.3       0.23   11.0   0.5    3.3  3  Fur_reg_FbpB     Fur-regulated basic protein B


Domain annotation for each model (and alignments):
>> Rpn9_C  Rpn9 C-terminal helix
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   4.3   1.6e-19   4.7e-16       1      29 [.     377     405 ..     377     406 .. 0.99

  Alignments for each domain:
  == domain 1  score: 58.1 bits;  conditional E-value: 1.6e-19
                 -SSHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      Rpn9_C   1 IINeeQInkMKdrLVeWdeqVtkLGkkie 29 
                 IIN++QI+kMK+rLVeW+eqV++L++k+e
  CCD26337.1 377 IINFDQIDKMKNRLVEWNEQVKALAEKME 405
                 9***************************8 PP

>> PCI  PCI domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.1   3.2e+03      42      59 ..      35      52 ..      12      87 .. 0.62
   2 !   54.2   0.6   5.6e-18   1.7e-14       2     104 ..     266     371 ..     265     372 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.1
                HHHHHHHHHHHHHHHCES CS
         PCI 42 Lekkvrerllrqvskiys 59
                +ekk++++l ++++++y+
  CCD26337.1 35 YEKKLWHQLTKSLIEFYH 52
                444444444444444433 PP

  == domain 2  score: 54.2 bits;  conditional E-value: 5.6e-18
                 HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHTTHHH..HHHHHHHHHHHHHHHHHHH..CESEEEHHHHHHHHTSSHHHHHHHHHHHHHTTSSSEEEET CS
         PCI   2 sysdllkalrsgnlsgfseelkdleeelladdglaq..llesLekkvrerllrqvsk..iyssislerlaklldlsvdevEkilvklIrdgeirakidq 96 
                 ++  ll++l++g++ +f+ + k   e+l +  +     + + L++k+ +++l+++++    +++++ +++ + +l++d+vE++++++I+ g+++++idq
  CCD26337.1 266 WLLNLLNSLTNGDFNKFDNLIKHD-ENLKKSSNSILlkHEDFLRQKICLMTLIETVFakNIRTLTFNDISVATHLPEDNVEHLIMRAISLGLLKGSIDQ 363
                 6778*************9888765.5554444333366****************99989**************************************** PP

                 TTTEEEEC CS
         PCI  97 esgivvfk 104
                 ++++v+++
  CCD26337.1 364 VNQLVIIT 371
                 *****986 PP

>> CSN8_PSD8_EIF3K  CSN8/PSMD8/EIF3K family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.89   2.7e+03      70      94 ..      22      46 ..      11      79 .. 0.63
   2 !   15.5   0.2   4.2e-06     0.013      12     117 ..     235     346 ..     230     351 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.89
  CSN8_PSD8_EIF3K 70 adltadvagleelvReeiaklvgka 94
                      +l ++ +++e+l+ ++  + + k+
       CCD26337.1 22 SNLEPFFQEFETLYEKKLWHQLTKS 46
                     5666677777777666666655555 PP

  == domain 2  score: 15.5 bits;  conditional E-value: 4.2e-06
  CSN8_PSD8_EIF3K  12 lkaLtqndladfrlllkr.lpaaiqqsdeeiqklltLetlLeeanyakfwstlksddlsadlta.dvagleelvReeia..klvgkaY....es 97 
                      ++aL+ +++++f  ll   + ++i++ d++ q ll+L + L +++++kf +++k+d+  ++ ++ +  + e+  R++i+   l++  +    ++
       CCD26337.1 235 IAALLGDKIYNFGELLNHpIMSNILN-DPNYQWLLNLLNSLTNGDFNKFDNLIKHDENLKKSSNsILLKHEDFLRQKIClmTLIETVFakniRT 327
                      57999*******87776515556665.6**************************9865554444044444888899986446788888777777 PP

  CSN8_PSD8_EIF3K  98 IsadvlaelLglssdeelek 117
                      ++ ++++  ++l+ ++ +e+
       CCD26337.1 328 LTFNDISVATHLP-EDNVEH 346
                      7777777777777.666665 PP

>> DUF236  DUF236 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.2   5.3e-05      0.16      13      25 ..     260     272 ..     260     278 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.3e-05
      DUF236  13 yDPNYQTLAglnn 25 
                 +DPNYQ+L +l n
  CCD26337.1 260 NDPNYQWLLNLLN 272
                 7*******99865 PP

>> DUF2800  Protein of unknown function (DUF2800)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1     9e-05      0.27     168     207 ..     368     406 ..     350     412 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 9e-05
     DUF2800 168 VrltIvQPrldnvseweisveeLlewaeevlkpkaekaae 207
                 V +t vQPr+ n+++ +  ++ L ew e+ +k+ aek  e
  CCD26337.1 368 VIITWVQPRIINFDQIDKMKNRLVEWNEQ-VKALAEKMEE 406
                 66888**********************99.9999999844 PP

>> Fur_reg_FbpB  Fur-regulated basic protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.7      0.21   6.2e+02       5      17 ..     105     117 ..     104     118 .. 0.90
   2 ?   11.0   0.5   7.8e-05      0.23      16      33 ..     142     159 ..     142     160 .. 0.94
   3 ?   -3.1   0.1         2   5.9e+03      31      36 ..     402     407 ..     395     408 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.21
  Fur_reg_FbpB   5 klsFeeLVeeNKk 17 
                   k++F +L +eNK+
    CCD26337.1 105 KMNFIQLDNENKR 117
                   78999*******8 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 7.8e-05
  Fur_reg_FbpB  16 KkeLlnDpeamekIEekl 33 
                   K+eL++++e+++kIE k+
    CCD26337.1 142 KDELIRSRELLDKIETKF 159
                   89*************985 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2
  Fur_reg_FbpB  31 ekldek 36 
                   ek++ek
    CCD26337.1 402 EKMEEK 407
                   788887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1092  (0.0609069); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.28s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 2986.15
//
Query:       CCD26338.1  [L=554]
Description: hypothetical protein NDAI_0H01640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.9e-06   26.7   0.0    8.6e-06   25.6   0.0    1.6  1  Spt5-NGN  Early transcription elongation factor of RNA pol II
     0.0012   18.7   0.1      0.003   17.5   0.1    1.6  1  KOW       KOW motif


Domain annotation for each model (and alignments):
>> Spt5-NGN  Early transcription elongation factor of RNA pol II, NGN section
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   9.6e-10   8.6e-06       2      72 ..      31     100 ..      30     111 .. 0.89

  Alignments for each domain:
  == domain 1  score: 25.6 bits;  conditional E-value: 9.6e-10
    Spt5-NGN   2 iwavkctagqErevalslmkkilelakkenleIkSvfapdelkGyiyvEAdrkaaveralegipnvrgvvq 72 
                 +w v c+ g Er ++  l k  l+ + + + eI+S f ++  +G  ++E +++++++ + e++p++++ + 
  CCD26338.1  31 LWCVSCRCGYERVTMKALLKN-LQFEVDDGKEIFSMFLRKTYSGKFFIECKENTDMKSIWETLPEIYATKV 100
                 8*****************998.666677779***********************************99874 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   3.3e-07     0.003       1      31 [.     120     150 ..     120     151 .. 0.95

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 3.3e-07
                 TTSEEEESSSTTTTCEEEEEEEETTTTEEEE CS
         KOW   1 pGdhVkVvsGphkGktGkVvkvdqhkvrVfv 31 
                 +Gd+V +  G ++G+++++ ++ q+k +V++
  CCD26338.1 120 KGDYVFIKEGFYAGDIAVIDEILQDKQKVLL 150
                 7*************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       648  (0.0361426); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.39
# Mc/sec: 4252.94
//
Query:       CCD26339.1  [L=633]
Description: hypothetical protein NDAI_0H01650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.9e-58  196.0   0.2    1.4e-57  195.5   0.2    1.2  1  Pro_dh    Proline dehydrogenase


Domain annotation for each model (and alignments):
>> Pro_dh  Proline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.5   0.2   7.7e-62   1.4e-57       3     291 ..     281     615 ..     279     619 .. 0.84

  Alignments for each domain:
  == domain 1  score: 195.5 bits;  conditional E-value: 7.7e-62
                 HHHHHHHHTTE.EEEEEES-SS--SHH..HHHHHHHHHHHHHHHHHHHHC..CS-T.........TCC-S.EEE-GGG......T......T-SGGGHH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxx..xxxx.........xxxxx.xxxxxxx......x......xxxxxxxx RF
      Pro_dh   3 ktieklkkrgv.rlsldllgeavltee..dadryleayleaiksiekask..alkv.........leapg.vsvklsa......p......rletaeee 74 
                 k  ++l+krg+ +++l+l+ e+ ++++  ++d  +e++ e+i++i k +   +              apg +++k+sa      +      +++++ ++
  CCD26339.1 281 KCGKNLQKRGIsNMMLSLTIENSEGDKtfNTDTIVEQTIESIHTILKPNLleQ--LnsstladvnDIAPGyLALKPSAliekpkEvllnfgNIHNKYWQ 377
                 56688998899668888888866655511566778999999999955444221..1334555566666779********9986515666669******* PP

                 HHHHHHHHHHHHHHHHHHHTT-EEE..............E----GGGHH.HHHHHHHHHHHSCCTTT---..EEEEEETTBTTHHHHHHHHHHHHHHTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx..............xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh  75 evmeelverlrtlakeakelgvrll..............iDaEeaklqe.ltlelfrklnkepelkdwev..vgntyQaYlkdalevlqkllelAereg 156
                 ++ ++l+++++++ + + +l+ +ll              iDaE+ +lq   +++l+r l+k+ + ++ +   + +t+Q Yl+ ++e+++ + +lA++++
  CCD26339.1 378 QQRRKLIDNCSKINQIIFDLNKELLkkyptrkspffvctIDAEKFDLQTkGVYQLQRILMKKFNSTSSPIvsCIGTWQLYLRHSAEQIEMEKKLAHENN 476
                 *************************************************9999999999985555544434499************************* PP

                 S-EEEEEE--S-HHHHHHHHHHTT-S-SB-SSHHHHHHHHHHHHHHHH.......HTTTTEEEEEE-S-HHHHHHHHHHHHHT...T--GGGEEEEEET CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxx RF
      Pro_dh 157 frlgvkLVrGAYldsErkraqelgyespifdtkeeTDanYdavaelll.......enrdeiypavAsHNaesvakalalaeel.gqekeksevefqqLl 247
                 ++lg+k+VrGAY++sE++ra      s i++tk +TD+nYd+++ +++       e+++  ++ vA HN +s+  a++++ ++ + e +ks+v ++qLl
  CCD26339.1 477 YKLGLKIVRGAYMHSEKDRA------SIIHETKFDTDVNYDQIMTKIMadmteknEESSFGHLIVACHNYKSQIVATQILADKkDCEYAKSNVVIGQLL 569
                 ******************98......78********************9999765555566666**************99998688899********** PP

                 TSSHHHHHHH.HHTT.S-EEEEEEECEHHHHHHHHHHHHHHHH-TT CS
                 xxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      Pro_dh 248 GMadnlsfal.akag.ynvrkYlPvGpveevlpYLvRRleENtans 291
                 GMadnl++ l +++g +n++kY+P+Gp +e+ +YL+RRl+EN+++ 
  CCD26339.1 570 GMADNLTYDLvNNRGaKNIIKYVPWGPPRETKDYLLRRLQENGDAV 615
                 **********84554589*************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1201  (0.0669864); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.38
# Mc/sec: 4935.55
//
Query:       CCD26340.1  [L=987]
Description: hypothetical protein NDAI_0H01660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.9e-74  248.6   1.3    7.4e-74  248.0   1.3    1.3  1  M16C_assoc       Peptidase M16C associated
    3.8e-27   95.5   0.3    1.2e-16   61.3   0.0    4.2  5  Peptidase_M16_C  Peptidase M16 inactive domain
      3e-06   27.3   1.2    3.6e-05   23.8   0.0    2.7  3  Peptidase_M16    Insulinase (Peptidase family M16)


Domain annotation for each model (and alignments):
>> M16C_assoc  Peptidase M16C associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.0   1.3   1.2e-77   7.4e-74       1     251 []     477     721 ..     477     721 .. 0.97

  Alignments for each domain:
  == domain 1  score: 248.0 bits;  conditional E-value: 1.2e-77
  M16C_assoc   1 lkPdeeleeekekeekerLaakkaslseeekekiveetkeLkerQekpdsedlscLPtLkleDIpreiteleeekeve.idgvkvllhevpTNgivYfr 98 
                 ++++e++++++e ee+erL +k+++l++e+k+ i++++++L+  Q+k+  ed+scLPtL+++DIpr+      ++  e +++ ++ ++ ++TN+i+Y+r
  CCD26340.1 477 MEGKEDFSNNLELEEEERLRSKVETLDAEDKDIIFKRGQALQTMQQKK--EDVSCLPTLTIDDIPRNG-----DS-YEvQKDATINYRLTDTNDITYIR 567
                 999*********************************************..******************.....44.23357889*************** PP

  M16C_assoc  99 llfdlsd.lpeellpylpLftdvltelgtkkkdyeeleqeiklktGGisasvsvssspedldkyeegfvlsgkaLdrnvekmfeLlreilletkfdd.k 195
                 +  +l+d +p el+pylpLf+++lt lgt +++y+++e+ ++l+tGG+sa+++vss+p +l+  +  f+++g+aL+++++++f++++++l et+f++ +
  CCD26340.1 568 AKRSLNDsIPLELYPYLPLFAESLTTLGTTTETYSDIEDSMRLYTGGVSANINVSSNPITLQ-PHLSFAFDGWALNSKANHIFDIWKKLLIETDFQKnS 665
                 ******99***************************************************999.9*******************************8779 PP

  M16C_assoc 196 erlkelvkesksrlensiassGhsyAmsraasslspaaalseqlsGlsqlkflkeL 251
                  ++k+l+k+  s++++s+a+sGh yA+++a+++l++++a++e+lsG++q++++++L
  CCD26340.1 666 AKMKTLIKSLSSSNTSSVADSGHLYARGYASAGLNTTSAINETLSGIKQIQLISKL 721
                 *****************************************************998 PP

>> Peptidase_M16_C  Peptidase M16 inactive domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.42   2.5e+03     132     151 ..      57      78 ..      49      88 .. 0.76
   2 !   61.3   0.0     2e-20   1.2e-16       2     183 .]     222     405 ..     221     405 .. 0.82
   3 !    4.4   0.0    0.0055        33      75     165 ..     628     714 ..     611     718 .. 0.84
   4 !   24.2   0.0   4.6e-09   2.7e-05      77     180 ..     810     906 ..     759     909 .. 0.81
   5 ?   -2.5   0.0      0.74   4.4e+03       2      26 ..     946     970 ..     945     974 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.42
                      EEEES..SCEEEEEEEEEECTT CS
  Peptidase_M16_C 132 ndsyr..dsglfgisatadpen 151
                      ++++r    ++f+is++++p n
       CCD26340.1  57 LHIDRddKNNVFSISFKTNPPN 78 
                      5666666889999999999986 PP

  == domain 2  score: 61.3 bits;  conditional E-value: 2e-20
                      H-HHHHHHHHHHHSSGGGEEEEEEESS-HHHHHHHHHHHHTTSTHHSH..CSGSCTSSSSSGGGSSEEEEEEEES.......SSSSEEEEEEEE CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivGdvdheelvkliekyfgdlkaska..ppakptgepltpatlkkppvvlkkl.......deeqahlslafe 86 
                      l +edl ef++k+Y+p+n   + +G+++ ++++k + + f + +++ +  + a p       ++l+ ++ ++ +        +e q + s+++ 
       CCD26340.1 222 LKYEDLLEFHHKNYHPSNSRTYTYGNLPLNDTLKSLHERFIGYGKRVQsaNVATP-------QPLSNNRDIIMDGqfdfmlpPEIQLKTSMTWM 308
                      789***************************7777777666666633222323333.......34444444444444555555889********* PP

                      EECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTS..ESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHHTS-HHHHHH CS
  Peptidase_M16_C  87 gpskendeddlalavlntlLgggmesrLytnlrekegl..aysvsafndsyrdsglfgisatadpenveevvevilkelrklkkeglteeeler 178
                      + s ++ ++ + l++l +lL++g +s++y++l  ++++    sv+ ++ s++  ++f++++++ ++ ++   + +l++++ + +e+++++ +++
       CCD26340.1 309 CGSPDDYYETFLLKILGNLLLDGHSSKFYQRLI-ESNIglDFSVNTGVESTTALNFFTVGVQGAKD-LDLFKKTVLQTFESILNEDFDRKKIDA 400
                      *********************************.5544348999999*****************88.9************************** PP

                      HHHHH CS
  Peptidase_M16_C 179 aknql 183
                      +++ql
       CCD26340.1 401 IIHQL 405
                      *9997 PP

  == domain 3  score: 4.4 bits;  conditional E-value: 0.0055
                      SSSSEEEEEEEEEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEES.SCEEEEEEEEEECT.THHHHHHHHHHHHHH CS
  Peptidase_M16_C  75 deeqahlslafegpskendeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyr.dsglfgisatadpe.nveevvevilkelrk 165
                         q+hls+af g ++ n + +  +++ + lL+++    + +n    + l++s s++n+s   dsg ++   +a  + n+  +++ +l+ +++
       CCD26340.1 628 L--QPHLSFAFDGWAL-NSKANHIFDIWKKLLIET---DFQKNSAKMKTLIKSLSSSNTSSVaDSGHLYARGYASAGlNTTSAINETLSGIKQ 714
                      4..99***********.******************...9999999888999******776667999999888888887777777777766665 PP

  == domain 4  score: 24.2 bits;  conditional E-value: 4.6e-09
                      SSEEEEEEEEEECTCTHTTHHHHHHHHHHHHSSTTSHHHHHHHTTTTSESEEEEEEEEESSCEEEEEEEEEECTTHHHHHHHHHHHHHHHHHH. CS
  Peptidase_M16_C  77 eqahlslafegpskendeddlalavlntlLgggmesrLytnlrekeglaysvsafndsyrdsglfgisatadpenveevvevilkelrklkke. 169
                      + ++ + ++ g+++ ++ed ++l+vl++lL       L +++r ++g ay+ +a  +     g+f+ + + dp+  +  ++ + k  + + +  
       CCD26340.1 810 QVHYTAQCLTGVPY-THEDGAPLQVLSNLLTFR---HLHREVR-EKGGAYGGGATYSALP--GIFSYYSYRDPQ-PLRSLDIFNKSAEYVLNGs 895
                      56778889999***.******************...*******.9999*******99777..***********9.8888999999999988887 PP

                      TS-HHHHHHHH CS
  Peptidase_M16_C 170 glteeelerak 180
                      ++ + +l++ak
       CCD26340.1 896 KWVKNDLDEAK 906
                      78888888887 PP

  == domain 5  score: -2.5 bits;  conditional E-value: 0.74
                      H-HHHHHHHHHHHSSGGGEEEEEEE CS
  Peptidase_M16_C   2 ltredlkefykkfYrpenmvlaivG 26 
                      +++ d+    +k+  ++n  +a+vG
       CCD26340.1 946 VSLSDINRVAEKYLLSKNSSVAVVG 970
                      5667788888899999999999998 PP

>> Peptidase_M16  Insulinase (Peptidase family M16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   6.1e-09   3.6e-05      26     107 ..      75     159 ..      73     181 .. 0.90
   2 ?   -4.1   0.2       2.4   1.4e+04     100     130 ..     489     513 ..     482     524 .. 0.62
   3 ?    1.3   0.0      0.05     3e+02      57     108 ..     616     669 ..     587     701 .. 0.77

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 6.1e-09
                    SCTTTTTHHHHHHHHTTSBBSSSCH.HHHHHHHHHTTCEE.EEEEESSEEEEEEEEEGGG.HHHHHHHHHHHHHSBTTSHHHHHH CS
  Peptidase_M16  26 epkdlnGlAHllehmafkgTkkyps.nklaeeleklGgsl.nAttsrentvYyvevlskd.lekaldvladvfkaplleesever 107
                     p++  G+ H leh  + g+ kyp  + + ++l++  +++ nA t  ++t + +++++ + +e++ +v  d + +pll+ +++ +
     CCD26340.1  75 NPPNCTGVPHVLEHTTLCGSLKYPVrDPFFKMLNRSLANFmNAMTGHDYTFFPFSTTNAKdFENLRNVYLDATLNPLLKAEDFYQ 159
                    58999*****************************9999999*************9987655******************999876 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2.4
                    TSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH CS
  Peptidase_M16 100 leesevererkvvekeveavdaepekvveen 130
                    lee       + ++ +ve +dae++++++++
     CCD26340.1 489 LEE------EERLRSKVETLDAEDKDIIFKR 513
                    333......3346688888888887777765 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.05
                    HHHTTCEEEEEEESSEEEEEEE..EEGGGHHHHHHHHHHHHHSBTTSHHHHHHH CS
  Peptidase_M16  57 leklGgslnAttsrentvYyve..vlskdlekaldvladvfkaplleesevere 108
                     ++++ s+n  t + + ++ ++  +l+++ + ++d++   ++++ ++++  +++
     CCD26340.1 616 SANINVSSNPITLQPHLSFAFDgwALNSKANHIFDIWKKLLIETDFQKNSAKMK 669
                    45677777888888888888876689999******************9999882 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       647  (0.0360868); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.74u 0.28s 00:00:01.02 Elapsed: 00:00:00.43
# Mc/sec: 6821.97
//
Query:       CCD26341.1  [L=403]
Description: hypothetical protein NDAI_0H01670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.9e-31  107.7   0.6    4.7e-18   64.8   0.3    2.2  2  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
    0.00061   19.6   0.0      0.027   14.3   0.0    2.1  2  RRM_occluded  Occluded RNA-recognition motif
     0.0011   18.6   0.0     0.0053   16.3   0.0    1.9  2  RRM_5         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
  ------ inclusion threshold ------
      0.037   14.1   0.1       0.28   11.3   0.0    2.2  2  RRM_7         RNA recognition motif
        0.3   11.9   9.7       0.42   11.4   9.7    1.2  1  PRCC          Mitotic checkpoint regulator, MAD2B-interacting


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.3   1.3e-21   4.7e-18       1      69 [.     106     167 ..     106     168 .. 0.97
   2 !   41.3   0.0   2.8e-14     1e-10       3      69 ..     183     247 ..     181     248 .. 0.96

  Alignments for each domain:
  == domain 1  score: 64.8 bits;  conditional E-value: 1.3e-21
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 lfV+ +p+dv e eL e+Fs+fGp+k++k+ +       gfafVeFe  e+A kA+e++ngk++ +++l
  CCD26341.1 106 LFVRPFPFDVQEAELNEIFSPFGPMKEVKILN-------GFAFVEFEEAESASKAIEEVNGKTFANQPL 167
                 8*******************************.......9************************99987 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 2.8e-14
                 EESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   3 VgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++nLp+ ++++eLk+l ++ +  ++++ v+  t+  +g++  eF+++e  ++Ale+ln+ +++g+++
  CCD26341.1 183 LRNLPEGCSWQELKDLAREHNLETTFSSVN--TRDFDGTGALEFPNEETLNSALEKLNNIEFRGSVI 247
                 69***************************9..8*******************************998 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   7.5e-06     0.027      12      70 ..     114     169 ..     106     173 .. 0.86
   2 ?    3.0   0.0     0.026        93       4      69 ..     181     248 ..     179     250 .. 0.86

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 7.5e-06
  RRM_occluded  12 tvnkariralveekegeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklrc 70 
                    v +a++++++++  g++k++ +    + A+vef+++++a ka+ + +g++f+++ l++
    CCD26341.1 114 DVQEAELNEIFSPF-GPMKEVKILN--GFAFVEFEEAESASKAIEEVNGKTFANQPLEV 169
                   57888889999999.9999998875..55*************************99987 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.026
  RRM_occluded   4 isllplsDtvnkariralveek..egeikkivLvpdheGAivefkdekiagkasLaLdgsefegkklr 69 
                   ++l +l++  + +++++l  e+  e  +  +  +   +   +ef +e++   a+ +L+++ef g ++ 
    CCD26341.1 181 LALRNLPEGCSWQELKDLAREHnlETTFSSVNTRDFDGTGALEFPNEETLNSALEKLNNIEFRGSVIT 248
                   678899999999999999999977788999988887777778**********************9986 PP

>> RRM_5  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.5e-06    0.0053      40     101 ..     116     174 ..      80     192 .. 0.83
   2 ?   -0.7   0.0      0.28     1e+03      68      97 ..     221     250 ..     214     254 .. 0.82

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 1.5e-06
       RRM_5  40 nldklFnlfclYgnvervkflktkketalvqmgdasaveravqHLnnaklfgkrlevalSKq 101
                    +l  +f+ +g ++ vk+l   ++ a+v+  +a ++ +a++ +n+++  +++lev++SK 
  CCD26341.1 116 QEAELNEIFSPFGPMKEVKIL---NGFAFVEFEEAESASKAIEEVNGKTFANQPLEVVFSKL 174
                 455788899***********9...599*********************************96 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.28
       RRM_5  68 lvqmgdasaveravqHLnnaklfgkrleva 97 
                  ++  ++   + a++ Lnn++  g+ + v 
  CCD26341.1 221 ALEFPNEETLNSALEKLNNIEFRGSVITVE 250
                 5677788889999*********99999886 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.7e-05      0.28       3      28 ..     105     130 ..     103     134 .. 0.91
   2 ?   -0.1   0.0      0.29     1e+03      48      70 ..     135     157 ..     131     174 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 7.7e-05
       RRM_7   3 kvFvGGlPiDiteeelkatfkefgkv 28 
                 ++Fv   P D++e+el++ f+ fg++
  CCD26341.1 105 RLFVRPFPFDVQEAELNEIFSPFGPM 130
                 689999******************97 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.29
       RRM_7  48 aakgyvflvfedeksvkaLleac 70 
                   +g++f+ fe+ +s  + +e+ 
  CCD26341.1 135 ILNGFAFVEFEEAESASKAIEEV 157
                 5689********99998888776 PP

>> PRCC  Mitotic checkpoint regulator, MAD2B-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   9.7   0.00012      0.42      10      94 ..       7      91 ..       3     168 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00012
        PRCC 10 assssaaaksaptisyeplvssapeaeeseeedppetepepasqpeaenadleakkaakssea.mvpepteqdpvkensknypgyy 94
                ++++ ++a++ap+++ +p+ s++p+a++++ e++ e+ep+p+ +p ++ +++  ++ + +  + m+pep+++   +++ ++y  ++
  CCD26341.1  7 EQPPVETATEAPQEPQQPMESANPSAPTESHETAMESEPAPPMEPMEPMDEPMEQMDEPMDRQqMQPEPQPYYN-QPPPSQYHPHH 91
                5677788999***************************************9999999999998889888777766.33333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 2983.96
//
Query:       CCD26342.1  [L=525]
Description: hypothetical protein NDAI_0H01680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-127  425.9   7.9     3e-127  425.6   7.9    1.0  1  PIG-S      Phosphatidylinositol-glycan biosynthesis class S p
    0.00078   19.6   0.0     0.0015   18.7   0.0    1.4  1  DUF1611_N  Domain of unknown function (DUF1611_N) Rossmann-li


Domain annotation for each model (and alignments):
>> PIG-S  Phosphatidylinositol-glycan biosynthesis class S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  425.6   7.9  3.3e-131    3e-127       2     509 ..      14     487 ..      13     489 .. 0.91

  Alignments for each domain:
  == domain 1  score: 425.6 bits;  conditional E-value: 3.3e-131
       PIG-S   2 fvlvvlllGlPlWwktTtiyRapLPleeiealadgkacrvtfplevvvdasslpeeeaekllkevqqalddllekkefsletrwslrlklseseeqees 100
                 f+l ++llG+PlW+k+TtiyRa LP+++ie+l++++ ++v++ ++v+++++    +++ +++++vq ++++ll++ +++    wsl++  ++++ +e  
  CCD26342.1  14 FLLTYVLLGIPLWYKLTTIYRATLPIDYIESLHNDQYQDVHLVIPVYIKPDV---YKFPDIHDAVQIQINHLLNSLKQK--VPWSLQILPYDDTIDE-- 105
                 8899**********************************************98...8*****************777766..59********888755.. PP

       PIG-S 101 eseeeedgaltvrllpeedlstssaelskeskaldvvyppnsvssssdklsafvaeelvelfleee.eealisasksellstskrttrsikysptyhLs 198
                        +++ ++l   +    + ++   +sk+++v+y+++sv   s++l+ f+a++l e++++ e +e l++     +++ + +t+ s+ y p++hLs
  CCD26342.1 106 -------KNHIINLELAD---FVGYNAAFDSKETTVYYDDKSV--ASNDLPFFIAQTLIEHTFHIEaSE-LNE-----IEQPTPQTSISVAYTPNVHLS 186
                 .......67788888888...8899******************..99******************6333.333.....333334467************ PP

       PIG-S 199 fsllnedpepssWdieaaleeylsplldaLspianftvetqvqyyaplslkpefeevaavvlskddLssfvnaaEwslsssisssptlnFvvyvPskse 297
                 +sll++d+ p+ Wdie++l++y+sp+++ Lsp++nftv+t ++yy++l+l++     ++  +++ +Ls+  + +E+s+++++s+s +ln+++++Ps + 
  CCD26342.1 187 ISLLSGDGLPIGWDIETTLKDYFSPFRELLSPVVNFTVDTSIIYYNDLNLHSLN---STSNITSTQLSHAMDLSELSSMNYFSESVALNLAIVFPSLER 282
                 *************************************************77543...233469************************************ PP

       PIG-S 298 spl...likdstgeqsktnsfliPqWGgvvilnppaeekksegsssaelseeelkevmevFssqLrsLLGlpseekleessspaslpllreweldtlkr 393
                 +p    +i++++ + s+++sf++PqWG+++i+++p  +       +++l+e++l+++m+ F+++L++LLGl +      ++   ++ l+  +++d++kr
  CCD26342.1 283 NPNgfeFINSPK-NHSNWQSFVVPQWGVITINKYPLRK-------NSYLTESYLNPIMYQFAQDLFELLGLTN-----SLD---DELLSPIITIDSFKR 365
                 ***999****99.5569*******************97.......89************************85.....222...33455669******* PP

       PIG-S 394 rrtlelllsassTLgSLarLveslpnivIpdeVaedVesalellesaldaleegrl......eealasareaealaerAFFdpsmlgqlYFPdEhkvAV 486
                 +++l++l++a++TL+SL++L++s+++++Ip+eV e+V++alel+ +++++l++ +l      ++al +++++++ +e AFF+ +ml+q++FP+EhkvAV
  CCD26342.1 366 ITILKNLEKATETLWSLVKLTKSFQQMAIPKEVLENVRKALELRLNIVEMLNDPKLgddlvwSQALIMSNQLVEYCETAFFHGEMLKQNFFPQEHKVAV 464
                 ***************************************************7744444479************************************** PP

       PIG-S 487 YlPLlgPvlvplllgllkelkel 509
                 YlPLlgP+++++l+g++k +ke 
  CCD26342.1 465 YLPLLGPLTIVTLMGVIKCFKEN 487
                 ********************985 PP

>> DUF1611_N  Domain of unknown function (DUF1611_N) Rossmann-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.7e-07    0.0015      13      81 ..     361     431 ..     357     439 .. 0.91

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 1.7e-07
   DUF1611_N  13 dd.rgipvvssleealaagaevlviGiapeggklpeswreavkeAleaGldvvsGlHe.rLsddpelaala 81 
                 d+ ++i++++ le+a++     + +++  +  ++p+++ e v++Ale+ l++v +l + +L dd  +++++
  CCD26342.1 361 DSfKRITILKNLEKATETLWSLVKLTKSFQQMAIPKEVLENVRKALELRLNIVEMLNDpKLGDDLVWSQAL 431
                 556889999****99999999999****************************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       735  (0.040995); expected 358.6 (0.02)
Passed bias filter:                      493  (0.0274974); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3799.71
//
Query:       CCD26343.1  [L=346]
Description: hypothetical protein NDAI_0H01690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-28   97.9   2.9    6.8e-25   87.0   0.1    2.9  3  TAFII28   hTAFII28-like protein conserved region


Domain annotation for each model (and alignments):
>> TAFII28  hTAFII28-like protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.2      0.42   7.6e+03      62      77 ..      75      91 ..      64     101 .. 0.59
   2 !   87.0   0.1   3.8e-29   6.8e-25       1      69 [.     132     200 ..     132     221 .. 0.93
   3 !   10.5   0.0   2.7e-05      0.49      64      85 ..     299     320 ..     291     321 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.42
     TAFII28 62 Arevqeeweesg.plqp 77
                A +v+e+++  + p ++
  CCD26343.1 75 ANNVKEKENRVKkPSTK 91
                45555555444444444 PP

  == domain 2  score: 87.0 bits;  conditional E-value: 3.8e-29
     TAFII28   1 lLlenfdeeqlnRYevfrrsklnkaavkklvnsvlsqsvsqnvaivvaglaKvFvgeiveeArevqeew 69 
                 lL++n+de+q+nR+evf+r++lnk++vkkl+ +v++qs+++n+ +++++++K+F+gei+e+A++v+ +w
  CCD26343.1 132 LLVTNLDEDQTNRFEVFHRTSLNKSQVKKLAGTVTNQSINDNIRVFLQAIGKIFAGEIIEKALDVKLKW 200
                 599***************************************************************999 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 2.7e-05
     TAFII28  64 evqeeweesgplqpehlreayr 85 
                 +v  e+ +++pl+peh+rea+r
  CCD26343.1 299 DVSVEKYNNSPLLPEHIREAWR 320
                 6777888899***********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1735  (0.0967706); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.42
# Mc/sec: 2468.05
//
Query:       CCD26344.1  [L=304]
Description: hypothetical protein NDAI_0H01700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.8e-20   71.4   0.0    1.4e-19   70.7   0.0    1.3  1  LCM       Leucine carboxyl methyltransferase


Domain annotation for each model (and alignments):
>> LCM  Leucine carboxyl methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0     8e-24   1.4e-19      51     187 ..      22     174 ..       4     175 .. 0.85

  Alignments for each domain:
  == domain 1  score: 70.7 bits;  conditional E-value: 8e-24
                 HCCCCT--HHHHHHHHHHHHHHHHHHHHHH.HCTT.....ESEEEEET-TT--HHHHHHHTT....TEEEEEEE-HHHHHHHHHHHHHSHHHHH..... CS
         LCM  51 eekkekkapelnrgiavRtrffddllkaal.saag.....irqvViLGAGlDtrayRlpwla....glkvfEvDqpevlefKretlkelgaepk..... 134
                 + +  +++p +n g+++Rt  +d  ++++l +  +      +q+++LG+G D r+  l   +      k+++vD+ e +++K e++ + + ++      
  CCD26344.1  22 NRNITTSFPVMNYGTYLRTISIDYHIEQFLlK--CsklneKAQIINLGCGSDLRMINLLNYNykdqIAKFIDVDFDESIKLKDEIISNNESLKIsldas 118
                 34456789***************999999955..44477889********************999889******************9888777789998 PP

                 ...EECSEEE--TTS.HHHHHHHHHHTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH CS
         LCM 135 ...aelryvpvDlrd.ddwpeaLaaagfdpekptawvaeGvlvYLtpeasdalleai 187
                    ++ +  p Dl+d  +  + L++   +++ pt+++ e+vl+Y++++ s++l++ i
  CCD26344.1 119 istNKYHIAPSDLKDaGKTISMLTNV-TNAKLPTLIITECVLCYMSQQDSQNLIDSI 174
                 86556667*******77777777776.899************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       797  (0.0444531); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2299.73
//
Query:       CCD26345.1  [L=157]
Description: hypothetical protein NDAI_0H01710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-25   88.0   0.6    5.3e-25   87.7   0.6    1.1  1  PIG-P     PIG-P


Domain annotation for each model (and alignments):
>> PIG-P  PIG-P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.6     3e-29   5.3e-25       2     121 .]      18     146 ..      17     146 .. 0.90

  Alignments for each domain:
  == domain 1  score: 87.7 bits;  conditional E-value: 3e-29
       PIG-P   2 reyygFvlyllstlafllyllwall.P.......eevlhalgityypnryWalavpayllmlvlyiyvalaslnlevltppldsletivDeaakv.eee 91 
                 + yy+F+l++l++ +++l ++ +++ P       ++  + +  +++p+r+ +l+ ++++lm +l++y++l+++n +vl +pl++l+ti+D++ k+   +
  CCD26345.1  18 NDYYWFSLHFLVSSIVVLLVVSTFIlPlfgiqviTDDRRVIINDLLPERKTILYAQSFFLMGMLFTYIGLLFYNEDVLRAPLNDLRTIIDTKGKIaIID 116
                 68******9988888888888777626***988844455666799************************************************998788 PP

       PIG-P  92 eeeeelkeyaseetdavmDlpigeVnevlY 121
                 +++e+l+eyas+e ++++Dlpi++V+evlY
  CCD26345.1 117 DKKEFLSEYASKESSGIIDLPIMDVCEVLY 146
                 99***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       799  (0.0445647); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.25s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 1260.86
//
Query:       CCD26346.1  [L=289]
Description: hypothetical protein NDAI_0H01720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00047   19.9   0.4     0.0011   18.8   0.4    1.5  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
  ------ inclusion threshold ------
      0.029   14.2   3.2       0.46   10.3   0.2    2.6  2  T6PP_N    Trehalose-6-phosphate phosphatase N-terminal helica


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.4   1.2e-07    0.0011       4      57 ..      89     143 ..      87     151 .. 0.95

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 1.2e-07
                 ESETTTSSHHHHHHHHHT.TSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHH CS
       RRM_1   4 gnLppdvteeeLkelFsk.fGpiksiklvrdetgkskgfafVeFeskedAekAle 57 
                 +nLp d t  +Lk lF+  f  ++++k++ + ++ +k++ fVe  s +d +k+++
  CCD26346.1  89 SNLPADFTPADLKLLFQSnFINFVKFKIFWELQKFNKKVVFVELFSFRDLNKIMK 143
                 6***************999******************************999876 PP

>> T6PP_N  Trehalose-6-phosphate phosphatase N-terminal helical bundle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.3    0.0047        42      65     100 ..     112     147 ..      95     148 .. 0.91
   2 ?   10.3   0.2   5.2e-05      0.46      63      97 ..     209     243 ..     160     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.0047
      T6PP_N  65 vrldikdEieeLekDlkFLefiqsdevenveqflst 100
                 v++ i  E++ ++k + F e ++ ++ +++ +f+s+
  CCD26346.1 112 VKFKIFWELQKFNKKVVFVELFSFRDLNKIMKFWSN 147
                 6788999*************************9987 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 5.2e-05
      T6PP_N  63 ekvrldikdEieeLekDlkFLefiqsdevenveqf 97 
                 ++ + +i+dE +   k+l+FL+ i++ e++++++ 
  CCD26346.1 209 SSTTNNIRDEFNSSIKMLNFLQIIHDYEHDYIHTS 243
                 56678************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       796  (0.0443973); expected 358.6 (0.02)
Passed bias filter:                      270  (0.0150594); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2175.31
//
Query:       CCD26347.1  [L=409]
Description: hypothetical protein NDAI_0H01730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-08   33.3  39.8      1e-05   25.7  16.4    4.3  2  EamA         EamA-like transporter family
  ------ inclusion threshold ------
      0.013   14.9  19.5      0.031   13.6   6.2    3.4  3  TPT          Triose-phosphate Transporter family
      0.022   14.9   0.0      0.081   13.1   0.0    2.0  3  DUF3180      Protein of unknown function (DUF3180)
      0.023   14.5   3.0      0.023   14.5   3.0    5.5  6  DUF3955      Protein of unknown function (DUF3955)
      0.044   13.7   4.0       0.24   11.3   0.3    2.6  2  EMP24_GP25L  emp24/gp25L/p24 family/GOLD
      0.046   13.8   7.4       0.35   11.0   0.1    3.6  4  ETRAMP       Malarial early transcribed membrane protein (ETR
       0.15   12.2   4.5       0.95    9.6   0.1    3.4  4  DUF2615      Protein of unknown function (DUF2615)
       0.69    9.4  10.6       0.23   11.0   3.8    2.6  2  Sulf_transp  Sulphur transport
        1.5    7.9  31.3     0.0055   16.0  15.3    3.0  2  PUNUT        Purine nucleobase transmembrane transport
          4    8.4   5.9         10    7.1   0.1    3.6  3  EphA2_TM     Ephrin type-A receptor 2 transmembrane domain
        7.6    6.4   9.1       0.38   10.6   0.1    3.1  3  DUF2976      Protein of unknown function (DUF2976)


Domain annotation for each model (and alignments):
>> EamA  EamA-like transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7  16.4   6.4e-09     1e-05       2     136 ..      11     178 ..      10     179 .. 0.85
   2 !    7.2  15.4    0.0034       5.5       2     134 ..     203     367 ..     202     370 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 6.4e-09
        EamA   2 lgillallaalfwaiyfvlskillrkv...spltltfvrfliagilllii............................allkegkl..aklslkdwlll 67 
                 +gi+l+ ++ ++w ++ +++  +l+++    p+ +t + +   ++ l++                             +ll+ + +    ++l+ ++ l
  CCD26347.1  11 MGIILLSIVIILWVTSSLITSTILETYhynKPFLITYLNISSFSFYLVPSllkrfrskpastfpsdcenkleyesetsSLLNSHDKrdTAMPLQKIIKL 109
                 799999999999999999999999999444555555555444444444448899999999999999999999999999555555555689999999999 PP

        EamA  68 lllgllgtvlafllffyalkktsasnaslitslePvftlilsvlllgekltlkqllgivlillGvllil 136
                   + +l  ++a++  +++l+ ts s  ++++s++  ftl++s++l  ek++ ++++gi+++++G++l++
  CCD26347.1 110 SGTFCLLWFMANFTTNSSLSFTSISSQTILSSTSSFFTLLISSFLHMEKINNLKIFGILISFCGIILLT 178
                 9999999999********************************************************985 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0034
        EamA   2 lgillallaalfwaiyfvlskillrkv.......................spltltfvrfliagillliiallkegkl.aklslkdwllllllgllgtv 76 
                 +g+ lall+alf++iy +l k+ l+k                          + ++++ +l +    lii+ ++++   + ++ ++++ll++l +  ++
  CCD26347.1 203 FGDSLALLGALFYGIYSTLLKYSLQKNetrqqrqqqskqitektnsfdikLFFGFVGLITLTCLWPILIILNYFQIETlQLPNSNQLILLIILNCSINF 301
                 6899*********************999*********99999995544322223333444455555566666666666699999999999********* PP

        EamA  77 lafllffyalkktsasnaslitslePvftlilsvlllgek........ltlkqllgivlillGvll 134
                 +  +++ +++  t++ ++++ +s++  ++++  + + + +        +++  ++g++l++++ ll
  CCD26347.1 302 ISDFCWAKSIILTNPLIVTMGLSFTIPLAMFVDFMFINSSnsnsnyssMNINYIIGAILVMVSFLL 367
                 ********************9999999999999999986511111111555555555555555555 PP

>> TPT  Triose-phosphate Transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   6.2   1.9e-05     0.031      31     136 ..      42     178 ..      14     196 .. 0.69
   2 ?    8.3   0.5   0.00081       1.3     123     231 ..     196     302 ..     186     317 .. 0.74
   3 ?    1.1   0.7      0.12     2e+02     182     235 ..     317     371 ..     308     378 .. 0.63

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.9e-05
         TPT  31 Pltvsavqllvgsvlilvlwalglkk..............................rpkisse.flkailplalvktlghvlavvslskvaVSfthtvK 98 
                 P++++ +++ + s ++++++  ++++                               + +  +  +k   +  l+ ++++++++ sls +++S   ++ 
  CCD26347.1  42 PFLITYLNISSFSFYLVPSLLKRFRSkpastfpsdcenkleyesetssllnshdkrDTAMPLQkIIKLSGTFCLLWFMANFTTNSSLSFTSISSQTILS 140
                 55555555555555555555555555555555555555555555555555554422222222322222334578899********************** PP

         TPT  99 asePiFtvilsrlllgeklsllvylsLlpivgGvalas 136
                 ++  +Ft ++s++l  ek++ l++  +l+   G++l +
  CCD26347.1 141 STSSFFTLLISSFLHMEKINNLKIFGILISFCGIILLT 178
                 *********************************99977 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00081
         TPT 123 lsLlpivgGvalasvtElsFnlig..fisAlisnltfslrnifsKkllkklkdldalnlfaiitilslllllPvallvegvlktpsllkstkvslkevl 219
                  s+l i+ G +la +  l + + +  +   l  n t + r   sK++ +k+ ++d   +f ++++++l  l P++++++ ++  +  l+    + ++++
  CCD26347.1 196 NSILEIIFGDSLALLGALFYGIYStlLKYSLQKNETRQQRQQQSKQITEKTNSFDIKLFFGFVGLITLTCLWPILIILNYFQIET--LQLP--NSNQLI 290
                 5777788888888888777776552244578889999*************888**999********************9944333..3333..235666 PP

         TPT 220 lllllsgvlfhl 231
                 ll++l+  ++++
  CCD26347.1 291 LLIILNCSINFI 302
                 666666665555 PP

  == domain 3  score: 1.1 bits;  conditional E-value: 0.12
         TPT 182 iitilslllllPvallvegvlktpsllkst.kvslkevllllllsgvlfhlynqv 235
                 +i +++l +++P+a++v+ ++   s+ +s+ ++ + + ++  +l  v f l n  
  CCD26347.1 317 LIVTMGLSFTIPLAMFVDFMFINSSNSNSNySSMNINYIIGAILVMVSFLLINSS 371
                 567899999*********9555555555552222444444444445555555544 PP

>> DUF3180  Protein of unknown function (DUF3180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       4.2   6.8e+03      29      51 ..      10      32 ..       5      39 .. 0.65
   2 ?   13.1   0.0     5e-05     0.081      71     107 ..     202     238 ..     165     245 .. 0.88
   3 ?   -4.1   0.0       9.8   1.6e+04      29      38 ..     355     364 ..     342     372 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 4.2
     DUF3180 29 laavvllvlavvelvlAlqvrrr 51
                +++++ll + ++++v+   + ++
  CCD26347.1 10 TMGIILLSIVIILWVTSSLITST 32
                56666777777776666665555 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 5e-05
     DUF3180  71 vlAkAsalvGAllaGvyaGllvyllragelpaaaedl 107
                 +++ ++al+GAl+ G+y  ll y l+++e+++++++ 
  CCD26347.1 202 IFGDSLALLGALFYGIYSTLLKYSLQKNETRQQRQQQ 238
                 678899*******************999999988875 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 9.8
     DUF3180  29 laavvllvla 38 
                 +++++l++++
  CCD26347.1 355 IIGAILVMVS 364
                 3333333333 PP

>> DUF3955  Protein of unknown function (DUF3955)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   3.0   1.4e-05     0.023       2      45 ..       9      52 ..       8      59 .. 0.90
   2 ?   -0.6   0.5      0.74   1.2e+03      22      45 ..     129     154 ..     107     156 .. 0.64
   3 ?    0.8   0.1      0.26   4.2e+02       3      19 ..     164     180 ..     162     186 .. 0.69
   4 ?   -0.7   0.2      0.77   1.2e+03       2      22 ..     201     221 ..     200     224 .. 0.78
   5 ?   -3.0   0.7       4.1   6.7e+03      47      55 ..     254     262 ..     251     265 .. 0.42
   6 ?    2.6   0.2     0.074   1.2e+02       2      24 ..     354     376 ..     353     380 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.4e-05
     DUF3955  2 yiigllllllgiilliisnisgsyvdedGiLhEPFfLipiGyll 45
                ++ g++ll + iil+++s++++s++ e   +++PF  ++++  +
  CCD26347.1  9 TTMGIILLSIVIILWVTSSLITSTILETYHYNKPFLITYLNISS 52
                6889*******************************888887665 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.74
     DUF3955  22 sgsyvdedGiLhEP..FfLipiGyll 45 
                 s +++ ++ iL     Ff++ i+ +l
  CCD26347.1 129 SFTSISSQTILSSTssFFTLLISSFL 154
                 45566666666543357877777665 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.26
     DUF3955   3 iigllllllgiilliis 19 
                 i+g+l  + giill+ s
  CCD26347.1 164 IFGILISFCGIILLTNS 180
                 56777777788887766 PP

  == domain 4  score: -0.7 bits;  conditional E-value: 0.77
     DUF3955   2 yiigllllllgiilliisnis 22 
                 +i+g +l+llg +++ i+++ 
  CCD26347.1 201 IIFGDSLALLGALFYGIYSTL 221
                 567778999999999998875 PP

  == domain 5  score: -3.0 bits;  conditional E-value: 4.1
     DUF3955  47 ligiislvi 55 
                 ++g++ l++
  CCD26347.1 254 FFGFVGLIT 262
                 444444433 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.074
     DUF3955   2 yiigllllllgiilliisnisgs 24 
                 yiig++l +++++l+  s++s+s
  CCD26347.1 354 YIIGAILVMVSFLLINSSSCSTS 376
                 89999999999999999999987 PP

>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   0.00015      0.24     135     182 .]     230     277 ..     218     277 .. 0.89
   2 ?    2.9   0.3     0.056        92      66     123 ..     324     396 ..     319     401 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00015
  EMP24_GP25L 135 kylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyLkrfFk 182
                  +  ++r+++ +++ e+tns  ++  + +++++ l+++++++++ ++F+
   CCD26347.1 230 ETRQQRQQQSKQITEKTNSFDIKLFFGFVGLITLTCLWPILIILNYFQ 277
                  55688999999***********************************97 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.056
  EMP24_GP25L  66 sftakesgeykvCfdnsfstkss..............kkvsfdievg.seasdykdsakkekletleselkkl 123
                  sft +    + + f ns+++ s               ++vsf +  + s + +++++ ++++l++++++++++
   CCD26347.1 324 SFTIPLAMFVDFMFINSSNSNSNyssmninyiigailVMVSFLLINSsSCSTSSEEEEQQQQLNDTNQTIQQH 396
                  5666666777788888887777687788888888866666665555422222366777799999999999886 PP

>> ETRAMP  Malarial early transcribed membrane protein (ETRAMP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       4.7   7.7e+03      19      19 ..      28      28 ..      13      82 .. 0.66
   2 ?   -2.1   0.0       2.5     4e+03      58      71 ..     139     152 ..     136     161 .. 0.61
   3 ?    5.3   0.4     0.012        20      10      49 ..     165     245 ..     156     252 .. 0.56
   4 ?   11.0   0.1   0.00022      0.35       7      55 ..     354     402 ..     349     408 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4.7
      ETRAMP 19 l 19
                l
  CCD26347.1 28 L 28
                2 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.5
      ETRAMP  58 istiatalallvas 71 
                 +s++++  +ll+ s
  CCD26347.1 139 LSSTSSFFTLLISS 152
                 56666666666544 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.012
      ETRAMP  10 fafLlavnlltpeslcdevnkkk.........................................ekakkaikkiddkiekk 49 
                 f +L++ + ++  +++d++n+++                                         +  +++ ++  ++i++k
  CCD26347.1 165 FGILISFCGIILLTNSDNSNNNNnnntaisqnsileiifgdslallgalfygiystllkyslqkNETRQQRQQQSKQITEK 245
                 444555444444444444444422225777777777777777777777777777777776666644444444444444444 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 0.00022
      ETRAMP   7 llffafLlavnlltp.eslcdevnkkkekakkaikkiddkiekkkkkkKl 55 
                 +++ a+L++v++l   +s+c  +  ++e +++++++ +++i++++  kK+
  CCD26347.1 354 YIIGAILVMVSFLLInSSSCSTSS-EEEEQQQQLNDTNQTIQQHDYEKKN 402
                 667799999998765055565555.559****************999997 PP

>> DUF2615  Protein of unknown function (DUF2615)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.5     4e+03      62      85 ..      46      69 ..      38      86 .. 0.68
   2 ?    2.4   0.1       0.1   1.7e+02      61      96 ..     204     239 ..     176     249 .. 0.49
   3 ?   -3.0   0.1       5.1   8.3e+03      56      72 ..     260     276 ..     256     282 .. 0.81
   4 ?    9.6   0.1   0.00058      0.95      46      96 ..     340     390 ..     332     399 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.5
     DUF2615 62 lwlvvaavlfllrPsslrnasakn 85
                  l +  + f+l Ps l+++++k 
  CCD26347.1 46 TYLNISSFSFYLVPSLLKRFRSKP 69
                456677788999999999873332 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.1
     DUF2615  61 llwlvvaavlfllrPsslrnasaknkpsrkdnnddd 96 
                    l++  +lf+  +s+l ++s +++++r+++++++
  CCD26347.1 204 GDSLALLGALFYGIYSTLLKYSLQKNETRQQRQQQS 239
                 234556666777778888877333333333333332 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 5.1
     DUF2615  56 lfliallwlvvaavlfl 72 
                 l+++++lw +++++ ++
  CCD26347.1 260 LITLTCLWPILIILNYF 276
                 67889999999999886 PP

  == domain 4  score: 9.6 bits;  conditional E-value: 0.00058
     DUF2615  46 peaskeggsslfliallwlvvaavlfllrPsslrnasaknkpsrkdnnddd 96 
                 +++s+++ ss+ +  ++ +++++v fll  ss  ++s+++++++++ nd +
  CCD26347.1 340 SSNSNSNYSSMNINYIIGAILVMVSFLLINSSSCSTSSEEEEQQQQLNDTN 390
                 56778888999999999999******9998877766444444444444432 PP

>> Sulf_transp  Sulphur transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   1.0      0.11   1.8e+02     161     238 ..      75     168 ..       3     180 .. 0.42
   2 ?   11.0   3.8   0.00014      0.23      85     244 ..     204     361 ..     162     366 .. 0.59

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.11
  Sulf_transp 161 e........klektslakklfrkpwslv.lgavllgllavlawllsaktgrsfglgftvpgaki.lq....ylvlgtskflnwg...vvlvlGii 238
                  +        ++e++sl ++  ++   +     + l  ++ l w++ a+++++++l+ft+ ++++ l+    +++l  s+fl+++    + ++Gi+
   CCD26347.1  75 SdcenkleyESETSSLLNSHDKRDTAMPlQKIIKLSGTFCLLWFM-ANFTTNSSLSFTSISSQTiLSstssFFTLLISSFLHMEkinNLKIFGIL 168
                  133333333334444444333333333303444455556666665.5677888888876444430332222334444555554321134445554 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 0.00014
  Sulf_transp  85 Gslralitllffilgavalltgils.swleqllestvskeslyetlglspll.liall...lliallllvkelrkeklqeaeklektsla.kklfrkp 176
                  G+  al+ +lf+++ +++l++ + + ++++q ++++++ ++  +++++++ + +++l+   +l+ +l+++   + e+lq ++   + +l+   ++  +
   CCD26347.1 204 GDSLALLGALFYGIYSTLLKYSLQKnETRQQRQQQSKQITEKTNSFDIKLFFgFVGLItltCLWPILIILNYFQIETLQLPN---SNQLIlLIILNCS 298
                  5666677777777777777766655233333333333333344444444322123332000333333333334444444433...2222202222223 PP

  Sulf_transp 177 wslvlgavllgllavlawllsaktgrsfglgftvpgakilqylvlgtskflnwgvvlvlGiilGafla 244
                   ++ ++  + +      ++l++++  ++gl+ft+p+a +++++ +++s+  ++ + +++  i+Ga+l 
   CCD26347.1 299 INF-ISDFCWAK----SIILTNPLIVTMGLSFTIPLAMFVDFMFINSSNSNSNYSSMNINYIIGAILV 361
                  332.22233222....334667778899****************9999999999999*******9986 PP

>> PUNUT  Purine nucleobase transmembrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   16.0  15.3   3.4e-06    0.0055      62     187 ..      94     226 ..      14     234 .. 0.67
   2 ?   -4.5   8.9       5.9   9.6e+03      57     175 ..     236     360 ..     221     377 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 3.4e-06
       PUNUT  62 kettssslslkklvllyivlGllvavdnllyslgllylpvstfslilatqLaFtaifsalinkqkftrfiinsvvlltisaallalssssdkpaeeskk 160
                 ++++++ + l+k++ l+   +ll ++ n+     l+  ++s  +++++t+ +Ft ++s ++   k++ + i+ +++   ++ ll  s++s++ ++++ +
  CCD26347.1  94 HDKRDTAMPLQKIIKLSGTFCLLWFMANFTTNSSLSFTSISSQTILSSTSSFFTLLISSFLHMEKINNLKIFGILISFCGIILLTNSDNSNNNNNNN-T 191
                 4566677778899999999*******************************************************97777777776555555554444.4 PP

       PUNUT 161 kyvigfi........ltlaasllfaLlLslvellf 187
                 + +   i        l+l ++l+++++  l++++ 
  CCD26347.1 192 AISQNSIleiifgdsLALLGALFYGIYSTLLKYSL 226
                 44444440000011145555555555555555555 PP

  == domain 2  score: -4.5 bits;  conditional E-value: 5.9
       PUNUT  57 kkrkqkettssslslkklvllyivlGllvavdnllyslgllylpvstfslilatqLaFtaifsalinkqk...ftrfiins..vvl...ltisaallal 147
                 ++++++ t++++++  kl+   + l  l+ +  +l  l  +y  + t  l  + qL++  i+   in +       +ii+   +++   l++++ l + 
  CCD26347.1 236 QQQSKQITEKTNSFDIKLFFGFVGLITLTCLWPILIIL--NYFQIETLQLPNSNQLILLIILNCSINFISdfcWAKSIILTnpLIVtmgLSFTIPLAMF 332
                 33333566666667777777777777777777777665..88888999999999999999988777655410033333322112221111111112222 PP

       PUNUT 148 ssssdkpaeeskkkyvigfiltlaasll 175
                  ++    +++s+++y+   i+ +++++l
  CCD26347.1 333 VDFMFINSSNSNSNYSSMNINYIIGAIL 360
                 2222233333444444444444444443 PP

>> EphA2_TM  Ephrin type-A receptor 2 transmembrane domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2       1.3   2.1e+03       8      21 ..      12      24 ..       6      41 .. 0.59
   2 ?    1.7   0.1      0.31     5e+02      37      38 ..     212     228 ..     162     254 .. 0.43
   3 ?    7.1   0.1    0.0063        10       5      42 ..     355     392 ..     349     407 .. 0.39

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 1.3
    EphA2_TM  8 glvllvilvilvlv 21
                g++ll i vi+  v
  CCD26347.1 12 GIILLSI-VIILWV 24
                3333333.443332 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.31
    EphA2_TM  37 k...............s 38 
                 +               +
  CCD26347.1 212 AlfygiystllkyslqK 228
                 02233333333332221 PP

  == domain 3  score: 7.1 bits;  conditional E-value: 0.0063
    EphA2_TM   5 avaglvllvilvilvlvlvrrrsknrkqksdl....kskeek 42 
                 ++++++++v+++++    ++ +s++++q+++l    +    +
  CCD26347.1 355 IIGAILVMVSFLLINSSSCSTSSEEEEQQQQLndtnQ----T 392
                 3334444444343333333333333333333322210....1 PP

>> DUF2976  Protein of unknown function (DUF2976)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.2       1.3   2.1e+03      69      83 ..      10      24 ..       5      29 .. 0.67
   2 ?   -1.6   0.0       1.5   2.4e+03      21      49 ..     195     223 ..     178     242 .. 0.60
   3 ?   10.6   0.1   0.00023      0.38      34      85 ..     318     371 ..     298     373 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.3
     DUF2976 69 vvGvvllvvviwLlt 83
                 +G++ll +vi L  
  CCD26347.1 10 TMGIILLSIVIILWV 24
                578888877777644 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.5
     DUF2976  21 kgylkdgvillgLvlaavaflaVakaalk 49 
                 ++ + +++    L+l ++ f+ + +++lk
  CCD26347.1 195 QNSILEIIFGDSLALLGALFYGIYSTLLK 223
                 55555555555677777777777766654 PP

  == domain 3  score: 10.6 bits;  conditional E-value: 0.00023
     DUF2976  34 vlaavaflaVakaalkkfnei..segkaewgkfgltlvvGvvllvvviwLltkA 85 
                 ++     +++  a++  f  i  s++ ++++++ +  ++G++l++v   L++ +
  CCD26347.1 318 IVTMGLSFTIPLAMFVDFMFInsSNSNSNYSSMNINYIIGAILVMVSFLLINSS 371
                 4444444555566666555444389999**************999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2171  (0.121089); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 2803.05
//
Query:       CCD26348.1  [L=420]
Description: hypothetical protein NDAI_0H01740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.1e-10   38.8   7.8    1.1e-09   37.7   7.8    1.6  1  GATA             GATA zinc finger
  ------ inclusion threshold ------
       0.14   12.3   3.8       0.13   12.4   1.8    2.0  2  DNA_pol_alpha_N  DNA polymerase alpha subunit p180 N terminal
          4    7.7   5.2        3.2    8.0   0.4    2.6  2  RNA_pol_Rbc25    RNA polymerase III subunit Rpc25


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   7.8   1.8e-13   1.1e-09       1      32 [.     311     343 ..     311     347 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 1.8e-13
        GATA   1 CsnCgttkTplWRrgpdg..nksLCnaCGlyykk 32 
                 C +C+  +Tp+WRrgp g  nk LCn CGl+y+k
  CCD26348.1 311 CGQCRDEETPEWRRGPYGknNK-LCNKCGLFYRK 343
                 9**************7663145.**********9 PP

>> DNA_pol_alpha_N  DNA polymerase alpha subunit p180 N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.1   6.5e+03      47      54 ..      16      23 ..      11      38 .. 0.64
   2 ?   12.4   1.8   2.1e-05      0.13      10      46 ..     234     270 ..     225     279 .. 0.76

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.1
  DNA_pol_alpha_N 47 dFvvDDdg 54
                      Fv+D++ 
       CCD26348.1 16 KFVEDEED 23
                     56666543 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 2.1e-05
  DNA_pol_alpha_N  10 ggkkakdeyeve.eeeriYdeVdeeeYkklvrkrleed 46 
                      +gk + ++ +v+ e++ + d+V+++ Yk+ v+kr +++
       CCD26348.1 234 EGKVS-KKRKVHfEDDIVVDVVSDDAYKEPVKKRAKKQ 270
                      33333.33478889********************9886 PP

>> RNA_pol_Rbc25  RNA polymerase III subunit Rpc25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.4   0.00054       3.2      61     104 ..       2      45 ..       1      58 [. 0.71
   2 ?    1.0   0.5     0.079   4.7e+02      61      93 ..     243     281 ..     206     309 .. 0.49

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00054
                    E-TTSEEEEEEEEEEE-------HHHHHCHHHCCTS-SS--SST CS
  RNA_pol_Rbc25  61 ldvgeeirfrveeeifvdvkpkspkeaeleeeeaseeeaeeeee 104
                    +d++++ir+  e  +fv+ ++ +++++e+e+e++s++++++++ 
     CCD26348.1   2 YDTDKQIRLILEAAKFVEDEEDKKAREEAETEATSQNTSTNTSL 45 
                    899*************8888877777777666555554444433 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.079
                    E-TTSEEEEEEEEE.EE-------HHHHHCHHH.....C CS
  RNA_pol_Rbc25  61 ldvgeeirfrveee.ifvdvkpkspkeaeleee.....e 93 
                    +  ++ i + v+++ ++++  +k+ k+++++++     +
     CCD26348.1 243 VHFEDDIVVDVVSDdAYKEPVKKRAKKQNAKKNdsgtpN 281
                    333444444444330333322222222222222334431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1745  (0.0973284); expected 358.6 (0.02)
Passed bias filter:                      555  (0.0309554); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 3107.49
//
Query:       CCD26349.1  [L=679]
Description: hypothetical protein NDAI_0H01750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-84  282.5   0.1    3.4e-84  281.5   0.1    1.6  1  DOT1            Histone methylation protein DOT1
  ------ inclusion threshold ------
      0.022   14.0   0.1       0.32   10.2   0.1    2.3  1  Methyltransf_2  O-methyltransferase domain


Domain annotation for each model (and alignments):
>> DOT1  Histone methylation protein DOT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.5   0.1   3.8e-88   3.4e-84       1     205 []     448     653 ..     448     653 .. 1.00

  Alignments for each domain:
  == domain 1  score: 281.5 bits;  conditional E-value: 3.8e-88
                 HHHHTGGGGGGGGS--SSGGG----B-HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE--HHHHHHHHHHHHHHHHHHHHTTB- CS
        DOT1   1 YeravspeaekLkkYkafsnevYGEllpeflsevldkvnlkkedvFvDLGSGvGnvvlqaalevgcklsvGvEimdnaselaekqkeelkkrlklfGkk 99 
                 Y+ra++p+++kLk Ykafsn+vYGEllp+flse++ k++l++ ++F+DLGSGvGn+v+qa+le+gc++s+G+Eim + ++l+e q+ el++r klfG+ 
  CCD26349.1 448 YTRAIHPNVNKLKGYKAFSNFVYGELLPSFLSELFGKCDLNSTKTFMDLGSGVGNCVIQASLEYGCEKSFGCEIMPQVCHLTELQQVELQRRSKLFGFT 546
                 9************************************************************************************************** PP

                 ---EEEE.SS-STT-HHHHHHGGG-SEEEE--TT--HHHHHHHHHHHTT--TT-EEEESS-SS-TT----SSSTT-GGGGEEEEEEE--TT-BTTBSS- CS
        DOT1 100 lakiefi.rksFvenekveeiieeadvilvNNfaFdaelnkqlkellqdlkegtkiislkslvpskykinsrnledivnilkveelkllegsVSWTskk 197
                  ++ief+ rksFv+n +v ++i+++dv+l+NNf+Fd++lnk++++++q++k g+ki++lk+l++ +y+i++ n+e+i+n+lkve+++l+e+sVSWT+++
  CCD26349.1 547 PSDIEFSlRKSFVNNTRVDQLIPKCDVLLINNFLFDSALNKEVEKIIQNCKPGCKIVTLKNLRSFGYTIDFFNIENILNRLKVERIDLKEDSVSWTHNG 645
                 *************************************************************************************************** PP

                 -EEEEEEE CS
        DOT1 198 veyylstv 205
                 +ey++ tv
  CCD26349.1 646 GEYFIATV 653
                 ******97 PP

>> Methyltransf_2  O-methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   3.6e-05      0.32      56     157 ..     483     601 ..     476     605 .. 0.62

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 3.6e-05
                     HSS-GGG-SEEEEET-TTSHHHHHHHHH-TT-EEE..........EEE-HHHHHHHHHHS-----TTE......EEEES-TTTS-----SEEEEE CS
  Methyltransf_2  56 eafdleglkslvDvGGGtGalakaivsayPtikvi..........vfDlpeVveaAkehlsageeerv......efvgGdffkdslPeaDaillk 134
                      + dl++ k+++D+G G+G  + +++  y   k            + +l +V  + +++l   + +++      +fv+    ++ +P+ D++l++
      CCD26349.1 483 GKCDLNSTKTFMDLGSGVGNCVIQASLEYGCEKSFgceimpqvchLTELQQVELQRRSKLFGFTPSDIefslrkSFVNNTRVDQLIPKCDVLLIN 577
                     56788888999999999998888888888654433000001111133444444444444422222333001111455666667889********* PP

                     SSGGGS-.HHHHHHHHHHHHHH-- CS
  Methyltransf_2 135 rvlhDws.dekcvklLkrvkkalp 157
                     + l+D + ++++ k+++++k  ++
      CCD26349.1 578 NFLFDSAlNKEVEKIIQNCKPGCK 601
                     *****98578899******98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1635  (0.091193); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.28s 00:00:00.92 Elapsed: 00:00:01.06
# Mc/sec: 1935.74
//
Query:       CCD26350.1  [L=1403]
Description: hypothetical protein NDAI_0H01760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-67  227.9   1.3    3.3e-67  227.1   1.3    1.5  1  Med13_N   Mediator complex subunit 13 N-terminal
    6.8e-27   94.6   5.3    4.9e-19   68.8   0.0    3.5  4  Med13_C   Mediator complex subunit 13 C-terminal domain


Domain annotation for each model (and alignments):
>> Med13_N  Mediator complex subunit 13 N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.1   1.3   3.7e-71   3.3e-67       2     311 ..       6     284 ..       5     285 .. 0.96

  Alignments for each domain:
  == domain 1  score: 227.1 bits;  conditional E-value: 3.7e-71
     Med13_N   2 dflsnclTnvyalddlssIaYrvYtpketddnsaseaarrsllelqlrslsplvlvdldrlsLwvFsfgksedptdakdeleklflkgsglsrsssgti 100
                 ++l+++ +++y+++++ +++Y++Y+pk+ dd++a++      +el+lr+++p+ lv+l +++Lw+Fs+++++ p+ +k +++    + s +  +++g++
  CCD26350.1   6 YRLEELASSFYRIETIDHVNYAQYVPKNMDDQWAIQ------MELLLRKQNPRNLVALLSRCLWCFSVNDDLLPVLPKLPSA-NNEDKSPILPEKTGSF 97 
                 68999*******************************......****************************************.**************** PP

     Med13_N 101 tpsdaaasgdsskpgqsetqiyalFlkAvrkrislnl..srsrgviplgnrtlsseedaeesegsesllrlrpqltesgdlllslstikqpgllrlts. 196
                 t        ++skp+ ++  +yalFlkA+r++i++nl  ++++ +i++gn ++     ++ ++  + +l+l+p+l+++gdl+++l  +k+ +l +lt+ 
  CCD26350.1  98 TF-------EYSKPNLPP--HYALFLKALRRMIYINLakASNNRLIQFGNACI-----PLGKSTNYDILQLEPHLFANGDLVVTL-CCKNLNLVPLTEn 181
                 **.......99*******..*********************************.....*************************88.778999******5 PP

     Med13_N 197 slplssslallsgtpvyLaPsGirArllstsgptsklteqsesslltlpaenswelllewlkeshgidl...edeaWvevepklahlngqtssiasndq 292
                 ++++s     l+ +++y  PsGirA+l+s+          ++s +ltlp++n+ + ll +l+ shgi l   ++++Wv v+p  +hlng t++ as+++
  CCD26350.1 182 HIEESY----LQKHALYMVPSGIRAYLSSN----------NKSTCLTLPPKNA-DALLMTLSISHGIKLndkNNIKWVTVIPDIGHLNGNTPNVASYMD 265
                 555555....899*****************..........*************.***************765555************************ PP

     Med13_N 293 gedkgkrilWPaeLcflqd 311
                 ++++ ++++WP+eL+++q+
  CCD26350.1 266 PPTDIRKVIWPLELIYAQP 284
                 ***************9885 PP

>> Med13_C  Mediator complex subunit 13 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   1.1      0.35   3.2e+03     178     219 ..     294     334 ..     291     419 .. 0.55
   2 ?   -5.0   2.8       1.5   1.3e+04     214     220 ..     477     483 ..     380     543 .. 0.62
   3 !   68.8   0.0   5.5e-23   4.9e-19       5     148 ..    1119    1253 ..    1115    1279 .. 0.92
   4 !   26.5   0.0   4.1e-10   3.7e-06     216     330 .]    1283    1383 ..    1272    1383 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 0.35
     Med13_C 178 ilvfptsattqstpttfasedanaedtpedsseeddsdallv 219
                 i +fp+s  t+st +t+++ ++  ++  +d  + ++++a  +
  CCD26350.1 294 IDIFPSSTVTSSTAMTYNDFQNVLDTI-DDFIQLKQTSAYKT 334
                 567888888888888888887777764.33333332222222 PP

  == domain 2  score: -5.0 bits;  conditional E-value: 1.5
     Med13_C 214 sdallvd 220
                 +d+ +++
  CCD26350.1 477 NDNENIN 483
                 1221111 PP

  == domain 3  score: 68.8 bits;  conditional E-value: 5.5e-23
     Med13_C    5 fvLapplpkkiqfkla.aepssdlleegsvLhvaYclsedqrWllaawtDnrGelletasinlnrrrrkkararrevlqelWeftlgimsktsvpWR 100 
                   +Lap lp+k++fk + + p+s++ + +  +h+aY+ s d+ Wl aa tD++G+  +  s+ +     ++++++ e+++++W+++ +++s++  +  
  CCD26350.1 1119 TTLAPRLPEKVTFKSSqTAPPSSIINYDEYIHLAYSRSIDKCWLFAALTDSTGNENMIKSWYV----GNSKKTFDEACNQIWSMAFSLASRKYGKIC 1211
                  69**************999999*****************************************....9999************************** PP

     Med13_C  101 lvigrl.GrmghgelkaWssllskknlqkpsilsacLvsvepdpsLrlm 148 
                  l+++rl G++ ++el  W+++          ++++++v+v+ +++++++
  CCD26350.1 1212 LILTRLnGVLPDDELMNWRRFSG-------RNIHLAVVCVDDNTKITFY 1253
                  *****97889*************.......47999*****999998887 PP

  == domain 4  score: 26.5 bits;  conditional E-value: 4.1e-10
     Med13_C  216 allvdltdetwgvllshrlnnspsltelqqplasGylvtaptgpeaendcpvvlkvsLlhtssvkssksshpldskatedvLrevleqYraLswLar 312 
                    + d++++ +g+l +h ++ s+s+   + ++ sG+lv+ +    + + ++  ++v+Ll++++  s k            +L+ +le +r+L+ L++
  CCD26350.1 1283 YEIRDIDEDIHGALFQHPFPLSNSQ--HRCAIKSGALVKFK--RNSGEGTIDKFEVNLLNCPHADSGK------------LLESILEEFRNLAALNV 1363
                  567789999************9999..68*********999..8888999999*********996655............***************** PP

     Med13_C  313 argt..gdrrsclPvHlaal 330 
                    g+  g+r+s +P+H+ a+
  CCD26350.1 1364 WFGVsdGERNSHIPWHVLAV 1383
                  ****6666777******886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1403 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       655  (0.036533); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.27s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 9320.53
//
Query:       CCD26351.1  [L=657]
Description: hypothetical protein NDAI_0H01770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-48  164.7   0.0    3.4e-48  164.0   0.0    1.3  1  DUF676    Putative serine esterase (DUF676)
    0.00013   21.9   0.0    0.00025   20.9   0.0    1.4  1  Lipase_3  Lipase (class 3)
    0.00078   18.8   0.1     0.0013   18.1   0.1    1.2  1  DUF915    Alpha/beta hydrolase of unknown function (DUF915)
  ------ inclusion threshold ------
       0.13   11.5   0.0       0.19   11.0   0.0    1.2  1  Lipase    Lipase


Domain annotation for each model (and alignments):
>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.0   0.0   7.6e-52   3.4e-48       3     214 ..     193     409 ..     191     415 .. 0.93

  Alignments for each domain:
  == domain 1  score: 164.0 bits;  conditional E-value: 7.6e-52
      DUF676   3 kkdhLvVlvHGlqgn.saDlelikeqleki...keklpeekieflmsennesktfkgidvlgerlaeevlevvkkkkdk..nkkiSfvghSlGgliara 95 
                  ++hLv ++HG+++n ++D+ ++k+++e+i    ++++++++++++  +n+ k+  g+++lg+++a +++e +++ ++k    kiSf+ghSlGg+++++
  CCD26351.1 193 RPVHLVMMTHGIFSNiGCDMLYMKDKIEEItnsIDDSINPNVVVRGCIQNMGKSSYGVHYLGKKVALYIIELLENLNKKykVDKISFIGHSLGGPTQSM 291
                 689***************************7665667888************************************9998878**************** PP

      DUF676  96 aiaklkekemtlkeaikglepvtfitlasPhLGvlysskslinlglalleklkkslsmeqlgltGrdLflk.............ddkdeknsllykllk 181
                 a+ +l+ k+  + +  +g++p++fitlasP++Gv+++ ++          +++++l++++lgltGrdL+lk             d      +l++++l 
  CCD26351.1 292 AVHYLSVKRPDIFDPQSGIKPINFITLASPFIGVIGDFPL----------YVSMPLDFGALGLTGRDLNLKytpltskdgltigD-GPPPRKLIMEILP 379
                 ******88865666889***********************..........*********************************55.556678999**** PP

      DUF676 182 dekdlkliealklFkrrvlyanvvndrivplas 214
                 + ++l ++e+   F +r+lyan+v+d+ivpl++
  CCD26351.1 380 EPPALAVFER---FIHRTLYANIVHDGIVPLRT 409
                 ***9999997...******************99 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   5.5e-08   0.00025      39     108 ..     250     324 ..     210     330 .. 0.77

  Alignments for each domain:
  == domain 1  score: 20.9 bits;  conditional E-value: 5.5e-08
                 HHHHHHS-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS......---EEEEEES----B CS
    Lipase_3  39 fleayeeslreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengene......kkkvtvvtfGqPrvg 108
                    +  ++++  + + l++l +ky+  +i + GHSLGg + ++a  +l  +++         k+++ +t+++P +g
  CCD26351.1 250 VHYLG-KKVALYIIELLENLNKKYKVDKISFIGHSLGGPTQSMAVHYLSVKRPDIfdpqsgIKPINFITLASPFIG 324
                 33333.47777888999*******************************9999776889988899*********997 PP

>> DUF915  Alpha/beta hydrolase of unknown function (DUF915)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   2.9e-07    0.0013      83     115 ..     255     287 ..     251     302 .. 0.86

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 2.9e-07
      DUF915  83 kkqakwlkkvlseLkkkYnikkfnavGhSmGgl 115
                 kk a ++ + l++L+kkY+++k+ ++GhS Gg 
  CCD26351.1 255 KKVALYIIELLENLNKKYKVDKISFIGHSLGGP 287
                 5677889999*********************95 PP

>> Lipase  Lipase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   4.2e-05      0.19     118     168 ..     244     296 ..     196     306 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 4.2e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHH-..--GGGEEEEEETCHHHHHHHHHHCT CS
      Lipase 118 aqavenirvvgaevakllseLeeeln..yseenvhliGsslgaHvaGvaGrrl 168
                  +++  ++ +g++va  + eL e+ln  y  +++  iG+slg  +  +a ++l
  CCD26351.1 244 GKSSYGVHYLGKKVALYIIELLENLNkkYKVDKISFIGHSLGGPTQSMAVHYL 296
                 456778999*******999999998655999***********99888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       526  (0.0293379); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.60u 0.30s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4480.51
//
Query:       CCD26352.1  [L=302]
Description: hypothetical protein NDAI_0H01780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-19   71.1   0.1    1.3e-19   71.1   0.1    2.2  3  ECM11     Extracellular mutant protein 11


Domain annotation for each model (and alignments):
>> ECM11  Extracellular mutant protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   1.2      0.21   3.8e+03      26      51 ..      43      69 ..       8      95 .. 0.53
   2 ?   -2.3   0.1      0.34   6.1e+03      47      47 ..     117     117 ..      72     160 .. 0.59
   3 !   71.1   0.1   7.4e-24   1.3e-19       6     133 .]     180     299 ..     176     299 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.21
       ECM11 26 appaelppsl.dtsetleekleelknl 51
                + +a+++ ++ ++++++  k+e+ k +
  CCD26352.1 43 RRDANNSLPDdNKKNSMVRKIEQPKGK 69
                222223322225555555556555554 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.34
       ECM11  47 e 47 
                 +
  CCD26352.1 117 K 117
                 2 PP

  == domain 3  score: 71.1 bits;  conditional E-value: 7.4e-24
       ECM11   6 elqqmsyseLekepFdhdpaappaelppsldtsetleekleelknlnekeqheffsslsideWeeaGdwlldqfsellkklkeaRrakrktaaefeaei 104
                 ++++ +y+e+++  +d  +++        l ++e+l++ l  l++++e +    ++++s+deW+e+G++l + +++l+ kl+++R +++++++++++ i
  CCD26352.1 180 AENPGNYEEIKCLMYDSFKEN--------LLEREELKNLLPGLERAEEIDLGLKIANWSLDEWIECGEKLQNDYRQLVYKLVKERMELSYKFQVITSVI 270
                 677888999999999976665........4788999999************************************************************ PP

       ECM11 105 erReeavrkkgeeldrkLeemkegGkevL 133
                 ++R++a++++g+ ld+kL ++ke Gke+L
  CCD26352.1 271 NDRASALNQQGKVLDEKLIKIKELGKEIL 299
                 ***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1298  (0.0723967); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.27s 00:00:00.77 Elapsed: 00:00:00.43
# Mc/sec: 2131.58
//
Query:       CCD26353.1  [L=136]
Description: hypothetical protein NDAI_0H01790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-56  188.7   0.3    3.2e-56  188.5   0.3    1.1  1  Ribosomal_S17e  Ribosomal S17


Domain annotation for each model (and alignments):
>> Ribosomal_S17e  Ribosomal S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.5   0.3   1.8e-60   3.2e-56       1     114 [.       1     117 [.       1     128 [. 0.93

  Alignments for each domain:
  == domain 1  score: 188.5 bits;  conditional E-value: 1.8e-60
                     XX----HHHHHHHHHHHHS-TTT--S-HHHHHHHHHHHS----SHHHHHHHHHHHHHHHHTTSS--SS---HHHHHHHHHHH------------- CS
  Ribosomal_S17e   1 mgrvrtktvKkaarviiekyyskltndFhtnkkvceevaiipskklrnkiaGyvthlmkriqkgpvrgislklqeeererrdnyvpevsaldqea 95 
                     mgrvrtktvK+a++ +ie+yy+klt+dF+tnk++c+e+a+i+sk+lrnkiaGy+thlmkriqkgpvrgis+klqeeerer+d+yvp+vsald ++
      CCD26353.1   1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPDVSALDLSH 95 
                     9******************************************************************************************6555 PP

                     ....----HHHHHHHHHH-X.XX CS
  Ribosomal_S17e  96 ....ievdkdtkemlkslgfesl 114
                         ++vd++t++++kslg++ l
      CCD26353.1  96 skgvLNVDNQTADLVKSLGLK-L 117
                     5567**************994.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      331  (0.0184617); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.23s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1037.79
//
Query:       CCD26354.1  [L=439]
Description: hypothetical protein NDAI_0H01800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-15   57.3   8.1    1.7e-15   56.6   8.1    1.4  1  ZZ               Zinc finger, ZZ type
    1.6e-09   37.8   0.7    2.9e-09   37.0   0.1    1.8  2  Myb_DNA-binding  Myb-like DNA-binding domain
    1.2e-07   32.0   0.1    3.8e-06   27.1   0.0    2.8  3  SWIRM            SWIRM domain
    8.6e-05   22.7   0.0    0.00025   21.2   0.0    1.8  1  Myb_DNA-bind_6   Myb-like DNA-binding domain
     0.0047   17.0   0.9      0.011   15.8   0.6    1.9  2  ARL2_Bind_BART   The ARF-like 2 binding protein BART
  ------ inclusion threshold ------
      0.012   15.0   0.2      0.026   14.0   0.2    1.5  1  Methyltransf_4   Putative methyltransferase


Domain annotation for each model (and alignments):
>> ZZ  Zinc finger, ZZ type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   8.1   5.6e-19   1.7e-15       1      45 []       1      46 [.       1      46 [. 0.97

  Alignments for each domain:
  == domain 1  score: 56.6 bits;  conditional E-value: 5.6e-19
                -SS-EE-TTT-S..EESSEEEESSSSS-EE-HHHHHH..H---SSE CS
          ZZ  1 ihkkytCdgCseapligvRyhclrcsdYDLCqsCfst.hkagkhkm 45
                +++k++Cd+Cs +++++vR +c++c++YDLC++Cf +  + g+h++
  CCD26354.1  1 MSNKFHCDVCSTDCTNRVRISCAICPEYDLCVPCFAQgAYNGNHRP 46
                689*****************************************96 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   9.6e-13   2.9e-09       3      45 ..      64     107 ..      62     108 .. 0.97
   2 ?   -3.0   0.1       2.9   8.6e+03      37      45 ..     275     283 ..     272     284 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 9.6e-13
                      SSBHHHHHHHHHHHHHHT.TCHHHHHHHHTSS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhG.nrWkkIaerlggRtekqcrsrwrny 45 
                       W ++E+  L+++ + +G ++W  Ia+++g+R ++++++++++y
       CCD26354.1  64 DWGADEEIALIKGAQTLGlGNWQDIADHIGSRDKEEVKEHYLKY 107
                      6******************************************9 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.9
                      HHHHHHHHH CS
  Myb_DNA-binding  37 qcrsrwrny 45 
                       crsr +++
       CCD26354.1 275 RCRSRIQQL 283
                      6***98886 PP

>> SWIRM  SWIRM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.14   4.1e+02      25      50 ..     122     147 ..     109     162 .. 0.80
   2 ?   -3.3   0.0       3.9   1.2e+04      35      47 ..     275     289 ..     258     299 .. 0.62
   3 !   27.1   0.0   1.3e-09   3.8e-06       9      87 ..     372     439 .]     368     439 .] 0.93

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.14
       SWIRM  25 gkdktpeeYlkiRnkiialyrenpke 50 
                 + +  +ee+l+ R++ i+l+r +p e
  CCD26354.1 122 EISVPQEEFLEQRKRRIELFRDKPLE 147
                 4467799**************99854 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 3.9
       SWIRM  35 kiRnki..ialyren 47 
                 ++R +i  ++++r+n
  CCD26354.1 275 RCRSRIqqLQEWRSN 289
                 444444225556655 PP

  == domain 3  score: 27.1 bits;  conditional E-value: 1.3e-09
       SWIRM   9 dslhpiEkellselfngkdktpeeYlkiRnkiialyrenpkeyltvteaqkalkrrrltgidvnllsrihefLerwGlI 87 
                   l+ +E++l+ +l     + p+ Y++i++ ++++  ++ + +++++++ ++lk      id  +++++++f++++ +I
  CCD26354.1 372 GLLSVDEQQLCIQLK----ILPKPYFAIKDLMFRELIRT-RGHMQRKDCIQLLK------IDPIKANKVYDFFQSQHWI 439
                 5688899****9999....*******************8.888******99999......8****************99 PP

>> Myb_DNA-bind_6  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   8.3e-08   0.00025       1      42 [.      65     108 ..      65     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 8.3e-08
  Myb_DNA-bind_6   1 WteeEdeiLlklvekyg.ndWknIaealnrRtpkqcfdrwkn.k 42 
                     W ++E+ +L+k+ ++ g  +W  Ia++++ R+++++++++++  
      CCD26354.1  65 WGADEEIALIKGAQTLGlGNWQDIADHIGSRDKEEVKEHYLKyY 108
                     8899*************66*********99**********9844 PP

>> ARL2_Bind_BART  The ARF-like 2 binding protein BART
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.9   1.5e+04      62      75 ..     120     133 ..     115     139 .. 0.66
   2 !   15.8   0.6   3.8e-06     0.011      80     109 ..     242     272 ..     171     276 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 4.9
                     HTT-SSS--THHHH CS
  ARL2_Bind_BART  62 leeigismeeflea 75 
                      +ei++ +eefle+
      CCD26354.1 120 TKEISVPQEEFLEQ 133
                     56666666666654 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 3.8e-06
                     .SS-G.GSSHHHHHHHHGGG-HHHHHHHHHH CS
  ARL2_Bind_BART  80 lsekk.evakkvfeqllaadDFeaFkkmMvk 109
                     +++k+   + kvf ql++a+DFe+F k M++
      CCD26354.1 242 KEAKElYNKLKVFAQLMTAQDFEEFSKDMLE 272
                     222333556789*****************97 PP

>> Methyltransf_4  Putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.2   8.6e-06     0.026     100     161 ..     244     302 ..     234     310 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 8.6e-06
                     HHHHHHHEEEEEEEEEEESHHHHHHHHHHHHHCSTTEEESSCCCSCCTCHCHHCCCSSTTCC CS
  Methyltransf_4 100 lkelarvLkkgGvlelaTDveeyaeemlkvleeeplferlskeeeleeeplsvlriatkyeq 161
                      kel ++Lk+ ++l +a D+ee++++ml++l++  +++   + +e+  + +++l+   kye+
      CCD26354.1 244 AKELYNKLKVFAQLMTAQDFEEFSKDMLEELRCRSRIQ---QLQEWRSNGITTLEAGLKYER 302
                     688999****************************5555...434444444557777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       792  (0.0441742); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3250.87
//
Query:       CCD26355.1  [L=441]
Description: hypothetical protein NDAI_0H01810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.9e-30  102.8   1.9    7.9e-30  102.8   1.9    2.9  3  U3_assoc_6    U3 small nucleolar RNA-associated protein 6
      2e-05   23.9   2.8     0.0025   17.0   0.4    2.7  3  NRDE-2        NRDE-2, necessary for RNA interference
    0.00072   20.2   0.0        1.6    9.8   0.0    2.7  2  TPR_14        Tetratricopeptide repeat
     0.0013   18.9   1.2        2.4    8.7   0.1    3.6  3  TPR_17        Tetratricopeptide repeat
     0.0022   18.0   4.0      0.035   14.1   4.0    2.5  1  Suf           Suppressor of forked protein (Suf)
  ------ inclusion threshold ------
      0.049   13.3   0.0       0.53   10.0   0.0    2.2  2  TPR_11        TPR repeat
      0.052   13.7   1.0        1.1    9.6   0.1    2.9  2  Nuclease_act  Anticodon nuclease activator family
       0.13   12.2   1.2       0.29   11.1   1.2    1.6  1  DUF3966       Protein of unknown function (DUF3966)


Domain annotation for each model (and alignments):
>> U3_assoc_6  U3 small nucleolar RNA-associated protein 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   1.9   3.5e-33   7.9e-30       1      83 []       9      92 ..       9      92 .. 0.99
   2 ?    4.1   0.1     0.022        49      44      70 ..     181     209 ..     160     220 .. 0.77
   3 ?   -3.8   0.2       6.1   1.4e+04      47      61 ..     391     405 ..     386     418 .. 0.64

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 3.5e-33
  U3_assoc_6  1 LEqmlpeledleekglFtkeEikeIvkkrrkfEyklqrrgkkkedflkYieyElnLeklrkkRrkrlkl.kkkksksdysivrR 83
                LEq++pe++dl ek+lFtk+E++ I+kkr++fE++l++rg++++d++kYi yE+n++klr+kR+kr+ + ++++s+sd+si++R
  CCD26355.1  9 LEQCIPEMDDLVEKNLFTKNEVSLILKKRTDFEHRLNSRGSSINDYMKYIIYETNVDKLRQKRVKRILQaSRSNSLSDWSIQQR 92
                8******************************************************************99999**********98 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.022
  U3_assoc_6  44 edflkYieyElnLeklrkkRrkrlkl..k 70 
                 + + +Y+++Eln  + +  Rrk ++l  +
  CCD26355.1 181 KLWYEYVKFELNFITKLINRRKVMGLisE 209
                 55789********9999999999998532 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 6.1
  U3_assoc_6  47 lkYieyElnLeklrk 61 
                  kY +y  ++ek + 
  CCD26355.1 391 KKYFAYKDKIEKSLV 405
                 566666666666544 PP

>> NRDE-2  NRDE-2, necessary for RNA interference
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.4   1.1e-06    0.0025      71     134 ..      77     140 ..      32     147 .. 0.73
   2 ?    3.3   0.0     0.017        38       7     115 ..     135     158 ..     134     169 .. 0.55
   3 !    5.7   0.0    0.0032       7.1      91     145 ..     169     227 ..     157     244 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.0 bits;  conditional E-value: 1.1e-06
      NRDE-2  71 llelLklgseiwdseklakeWeellkenpnsvkLWreyldfrqsnfasfsvekvkelyekclrt 134
                 +  + +  s+   +++++  +++  ++ pn++k W  yl+f  ++ a+ s++k++++y+++l+ 
  CCD26355.1  77 QASRSNSLSDWSIQQRITFIYQRGTNKFPNDLKFWAMYLNFLKTRGAKTSYKKIHNVYNEVLKL 140
                 4444444444444455555566667799*********************************985 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.017
      NRDE-2   7 nraveenPedidaWlelvefQdellsaeeeslskserkalaeiklsilekAleknksnpdserLllelLklgseiwdseklakeWeellkenpnsvkLW 105
                 n+ ++ +P+++d W++ +++                                                                               
  CCD26355.1 135 NEVLKLHPNNVDIWISCAKYEY----------------------------------------------------------------------------- 156
                 4555566666666666555544............................................................................. PP

      NRDE-2 106 reyldfrqsn 115
                         + 
  CCD26355.1 157 --------EV 158
                 ........43 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0032
      NRDE-2  91 WeellkenpnsvkLWreyldfrqsnfasf....svekvkelyekclrtlsaklegrkvs 145
                 +++ l+ np+  kLW ey++f+++ ++++    +v  + +  e+ l+ l+++++++  +
  CCD26355.1 169 FQNGLRFNPDVAKLWYEYVKFELNFITKLinrrKVMGLISEREQELDMLNEENDNKGDE 227
                 5666778999999*****99999966665644445455555555555555554444433 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0007       1.6       3      39 ..     110     149 ..     108     154 .. 0.90
   2 !    7.7   0.0    0.0033       7.4      15      43 ..     160     188 ..     151     189 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0007
      TPR_14   3 allalaeallalGd...pdeAiallrralalaPddaeawl 39 
                  +++++ +l ++G    +++  ++++++l+l+P++ ++w+
  CCD26355.1 110 FWAMYLNFLKTRGAktsYKKIHNVYNEVLKLHPNNVDIWI 149
                 6999******99966669*******************996 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0033
      TPR_14  15 GdpdeAiallrralalaPddaeawlllaq 43 
                  +++  +++++  l+ +Pd a +w+++++
  CCD26355.1 160 ANFKSCRTVFQNGLRFNPDVAKLWYEYVK 188
                 589999*******************9986 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.099   2.2e+02       2      27 ..      97     122 ..      96     126 .. 0.86
   2 !    8.7   0.1    0.0011       2.4       2      17 ..     134     149 ..     133     161 .. 0.87
   3 ?    4.1   0.0     0.033        74       2      22 ..     169     189 ..     168     201 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.099
      TPR_17   2 ylkaleldPnnadaynnLAelllknG 27 
                 y++   + Pn+ +++ ++ ++l+ +G
  CCD26355.1  97 YQRGTNKFPNDLKFWAMYLNFLKTRG 122
                 999999*********99988887666 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0011
      TPR_17   2 ylkaleldPnnadayn 17 
                 y ++l+l+Pnn+d + 
  CCD26355.1 134 YNEVLKLHPNNVDIWI 149
                 999***********97 PP

  == domain 3  score: 4.1 bits;  conditional E-value: 0.033
      TPR_17   2 ylkaleldPnnadaynnLAel 22 
                 +++ l+ +P+ a++++++ ++
  CCD26355.1 169 FQNGLRFNPDVAKLWYEYVKF 189
                 7899************99666 PP

>> Suf  Suppressor of forked protein (Suf)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   4.0   1.6e-05     0.035      58     129 ..      96     168 ..      86     258 .. 0.69

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.6e-05
         Suf  58 IFelGlKkFpedeefvlkYldyLislnddnnaRvlfekvvsklskekeakelykkfleyestfg.dlssilkl 129
                 I+ +G  kFp+d +f + Yl++L     +++ + + +   + l+ +++  +++   ++ye++   + +s   +
  CCD26355.1  96 IYQRGTNKFPNDLKFWAMYLNFLKTRGAKTSYKKIHNVYNEVLKLHPNNVDIWISCAKYEYEVHaNFKSCRTV 168
                 999***************************9999988888888889988888888888888754344444444 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00024      0.53      15      35 ..     132     152 ..     131     155 .. 0.89
   2 ?    0.3   0.0      0.26   5.9e+02      15      32 ..     167     184 ..     166     185 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00024
      TPR_11  15 eaYkkAlkldPdnaeayynLG 35 
                 ++Y++ lkl P+n++++  ++
  CCD26355.1 132 NVYNEVLKLHPNNVDIWISCA 152
                 68**************97765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.26
      TPR_11  15 eaYkkAlkldPdnaeayy 32 
                 +++++ l+++Pd a ++y
  CCD26355.1 167 TVFQNGLRFNPDVAKLWY 184
                 578999******999999 PP

>> Nuclease_act  Anticodon nuclease activator family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1      0.22   4.9e+02      12      21 ..     113     122 ..     106     124 .. 0.88
   2 ?    9.6   0.1   0.00048       1.1       7      17 ..     339     349 ..     336     352 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.22
  Nuclease_act  12 FYRnnLKtKG 21 
                    Y n LKt+G
    CCD26355.1 113 MYLNFLKTRG 122
                   599******9 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00048
  Nuclease_act   7 EHvmqFYRnnL 17 
                   +Hv+qF+Rn L
    CCD26355.1 339 NHVLQFWRNEL 349
                   6********98 PP

>> DUF3966  Protein of unknown function (DUF3966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.2   0.00013      0.29      19      34 ..     209     224 ..     207     228 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00013
     DUF3966  19 EITAeLeMLarEsDkK 34 
                 E   eL+ML+ E+D K
  CCD26355.1 209 EREQELDMLNEENDNK 224
                 55679*********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       803  (0.0447878); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.28s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 3010.94
//
Query:       CCD26356.1  [L=146]
Description: hypothetical protein NDAI_0H01820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-57  192.7   2.7      3e-57  192.5   2.7    1.0  1  Ribosomal_S13  Ribosomal protein S13/S18
     0.0042   15.9   0.0     0.0059   15.4   0.0    1.2  1  FbpA           Fibronectin-binding protein A N-terminus (FbpA


Domain annotation for each model (and alignments):
>> Ribosomal_S13  Ribosomal protein S13/S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.5   2.7   3.3e-61     3e-57       1     128 []      16     144 ..      16     144 .. 0.99

  Alignments for each domain:
  == domain 1  score: 192.5 bits;  conditional E-value: 3.3e-61
  Ribosomal_S13   1 RilgtdidgkkkveialtaikGiGrrkakiilkkadvdedkrigelteeeiekieeivenkaqykipnwi.nrqkdikdGkdshvvendlrrklre 95 
                    R+l+t++dg+ k+++alt+ikG+Grr+++ ++kkadvd +kr+gelt+ee+e+i++i++n+++ykip+w+ nrqkdi+dGkd+h ++n++++klr+
     CCD26356.1  16 RLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFlNRQKDITDGKDYHSLANNVESKLRD 111
                    89********************************************************************************************** PP

  Ribosomal_S13  96 dieRlkkirsyrGlRHkrGlkvRGQrTkttgRt 128
                    d+eRlkkir++rG+RH++Gl+vRGQ+TkttgR+
     CCD26356.1 112 DLERLKKIRAHRGIRHFWGLRVRGQHTKTTGRR 144
                    ********************************7 PP

>> FbpA  Fibronectin-binding protein A N-terminus (FbpA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.6e-07    0.0059     188     237 ..      27      75 ..       5     111 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 6.6e-07
                 XXHHHHHHHBTTXXHHHHHHHHTTXSSSH...............HHHHHH CS
        FbpA 188 dlvkaLvkafqGlspllaeelleragldketsakelseedlerlyealqe 237
                 ++v aL ++++G+++ +++ ++++a +d +++a el++e+ler+ + +q+
  CCD26356.1  27 KIVYAL-TTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQN 75 
                 455555.5568*********************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 1034.61
//
Query:       CCD26357.1  [L=660]
Description: hypothetical protein NDAI_0H01830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      8e-07   29.8   0.8    1.9e-06   28.6   0.8    1.7  1  Metallophos  Calcineurin-like phosphoesterase


Domain annotation for each model (and alignments):
>> Metallophos  Calcineurin-like phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.8     1e-10   1.9e-06       2     185 ..      97     343 ..      96     367 .. 0.61

  Alignments for each domain:
  == domain 1  score: 28.6 bits;  conditional E-value: 1e-10
                  EEEEEESBTB....................................TTCCTHHHHHHHHHHHHHHHTTESEEEEESTSSSSS....HHHHHHHHH.HH CS
  Metallophos   2 rilvigDlHl....................................algggqlddllkllddllreekpdlvllaGDlvdrg....dlekellel.la 58 
                  r+l+i+D+H                                     ++ +  +d +l+++ + l++ k+d+v+++GD++ +     ++ +e++ + ++
   CCD26357.1  97 RFLHITDIHPdrlykegssidyvchgkepskkrdyapkfgkamagcDSPVDLMDHTLRWIGEHLKD-KIDFVIWTGDNIRHDndrkNPRTEFQIFeMN 193
                  8**************************************988866666666666666666666888.**********998888999555555555555 PP

                  HHHHH.................TSEEEEEC-TTS.........CHHHHHHHHHHHHHHH..HHHHEHHHCEEETSEEEEEETTE..EEEEEEESECEE CS
  Metallophos  59 alvky.................pipvylllGNHe.........gfeeellnkygylgif..sepwrsdaevfnnlplaslgsgs..lkvlllhGgspe 126
                  + v+                  ++ +++ lGN +         g +    ++y+ + +f  +e++r +               s  + + +++G    
   CCD26357.1 194 EIVAGkfqalfgnqntedprdfDVDIIPSLGNNDvfphnlfamGPTLQTRELYRIWSNFvpQEQKRIF--SR-----------SasFLTEVIPGK--- 275
                  55555555566667888999999999********7666666663333444444444444222222222..22...........122223333333... PP

                  ETHHHHHHHHHHHSCHHHHCC............HHHHHH..HHHHTTCSEEEEEESSESSCSSSCSCCHHHHH CS
  Metallophos 127 llvsldklgslnleleapepg............dewlkd..lekrekadwvivlgHsplyrgsgylfgdeale 185
                      + ++++l l++ +p  +             +wl    +e r+++  v + gH+p+    ++ f++ ++ 
   CCD26357.1 276 --LAVLSINTLYLFKANPLVDncnsrkqpgyqsLIWLGYilDEIRARGMKVWLSGHVPPI---EKNFDSSCFH 343
                  ..2222222222222222222222222223344666666777777777777777888888...4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       862  (0.0480785); expected 358.6 (0.02)
Passed bias filter:                      617  (0.0344135); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.66u 0.31s 00:00:00.97 Elapsed: 00:00:00.48
# Mc/sec: 4156.39
//
Query:       CCD26358.1  [L=196]
Description: hypothetical protein NDAI_0H01840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      3e-33  114.4   0.0    6.2e-33  113.4   0.0    1.5  2  AhpC-TSA    AhpC/TSA family
    1.1e-16   60.8   0.0    2.4e-16   59.8   0.0    1.4  2  Redoxin     Redoxin
    5.2e-09   35.8   0.4    1.4e-08   34.5   0.1    1.9  2  1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
  ------ inclusion threshold ------
      0.015   15.2   0.0      0.027   14.4   0.0    1.4  1  SCO1-SenC   SCO1/SenC


Domain annotation for each model (and alignments):
>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   1.4e-36   6.2e-33       1     123 [.       5     137 ..       5     138 .. 0.98
   2 ?   -2.3   0.0      0.85   3.8e+03      34      58 ..     170     194 ..     167     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 113.4 bits;  conditional E-value: 1.4e-36
                 TTSB----EEE...STTCEEEECHHHTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH-H........SSEEEE- CS
    AhpC-TSA   1 vgdkapdfelk...nadgetvslsdykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiekes.......lnfpllsD 89 
                 v+++ap f+ +   ++ +e++sl++ykgk+vvl f+p ++++vC+te+ a++++ ++f+e++++++  s+ds++s+ ++ +  +       +n+pll+D
  CCD26358.1   5 VQKQAPTFKKTavvDGIFEEISLEQYKGKYVVLAFVPLAFSFVCPTEIVAFSDASKRFEEQNAQLLFASTDSEYSLLAWTNVPRsegglgpVNIPLLAD 103
                 679********999999****************************************************************9999************** PP

                 TTSHHHHHTT-EETTTTECSCEEEEE-TTSBEEE CS
    AhpC-TSA  90 eegkvakaygvlkeekglalratfvidkegkiry 123
                 +++ ++++ygvl ee+g+alr+ f+id+ gkir+
  CCD26358.1 104 TNHSLSRDYGVLIEEEGIALRGLFIIDPLGKIRH 137
                 *********************************8 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.85
                 STST-CCHHHHHHHHHHCHHHCCCT CS
    AhpC-TSA  34 pkdwcpvCttelpalaklyeefker 58 
                 p +w+p+  t  p+  +  e f e+
  CCD26358.1 170 PCNWTPGSATIKPDVDASKEYFSEA 194
                 7789999999999998888888776 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.0   5.3e-20   2.4e-16       2     138 ..       5     146 ..       4     155 .. 0.86
   2 ?   -2.5   0.0      0.85   3.8e+03      35      43 ..     168     176 ..     167     194 .. 0.72

  Alignments for each domain:
  == domain 1  score: 59.8 bits;  conditional E-value: 5.3e-20
                 TTSBB---E.CCEETTCEEEEEHHHHTTSEEEEEEESTTT-HHHHHTHHHHHTHHHHHHCSTTTEEEEEESSSHHHHHHHHH........TT-TSEEEE CS
     Redoxin   2 agdkaPdft.lplaatdgnsvslsefkgkkvvvnfvpgafcPtCsaehpyleklaellkekgvdvvavvadndafvkefwgk........eglkfpvls 91 
                 + ++aP+f+ ++ ++   +++sl+++kgk vv+ fvp af+ +C +e++++ + +++++e + +     + ++++   +w++          +++p+l+
  CCD26358.1   5 VQKQAPTFKkTAVVDGIFEEISLEQYKGKYVVLAFVPLAFSFVCPTEIVAFSDASKRFEEQNAQL-LFASTDSEYSLLAWTNvprsegglGPVNIPLLA 102
                 5678999995334567789**************************************99999988.555666678888888889999999999****** PP

                 -TTSHHHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCHT CS
     Redoxin  92 DgsaaftkalGlrleedaseglrtpryavidedgkvvylevepepet 138
                 D ++++++++G+ +ee   eg++++ +++id  gk++++   + +++
  CCD26358.1 103 DTNHSLSRDYGVLIEE---EGIALRGLFIIDPLGKIRHITINDLSVG 146
                 ***********99885...68******************99888765 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.85
                 EESTTT-HH CS
     Redoxin  35 fvpgafcPt 43 
                 ++p++++P 
  CCD26358.1 168 VLPCNWTPG 176
                 689999997 PP

>> 1-cysPrx_C  C-terminal domain of 1-Cys peroxiredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.65   2.9e+03      32      39 ..      57      64 ..      54      65 .. 0.83
   2 !   34.5   0.1   3.1e-12   1.4e-08       5      39 ..     162     192 ..     158     193 .. 0.94

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.65
                HHHHHHHH CS
  1-cysPrx_C 32 davkryle 39
                da+kr++e
  CCD26358.1 57 DASKRFEE 64
                69***998 PP

  == domain 2  score: 34.5 bits;  conditional E-value: 3.1e-12
                 HHHHT-BB-TTT.TBT-EEE---SSHHHHHHHHHH CS
  1-cysPrx_C   5 adkhgvatPAnWkpGdkvivpPpateedavkryle 39 
                 +dk+g + P+nW+pG  +i   +++ + a+k+y++
  CCD26358.1 162 TDKNGTVLPCNWTPGSATI---KPDVD-ASKEYFS 192
                 8******************...*****.*****97 PP

>> SCO1-SenC  SCO1/SenC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   6.1e-06     0.027      12      68 ..      23      77 ..      15      79 .. 0.91

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 6.1e-06
   SCO1-SenC 12 eavteedlegkpslvffgFthCpdvCpttlanmaevldalgeeaekvqplfiTvDPe 68
                e+++ e+++gk++++ f+      vCpt++   +++ ++++e+  + q+lf + D e
  CCD26358.1 23 EEISLEQYKGKYVVLAFVPLAFSFVCPTEIVAFSDASKRFEEQ--NAQLLFASTDSE 77
                678999************************************9..888999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       341  (0.0190195); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1405.11
//
Query:       CCD26359.1  [L=186]
Description: hypothetical protein NDAI_0H01850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.4e-70  235.1   0.0    4.9e-70  234.9   0.0    1.0  1  Guanylate_kin    Guanylate kinase
    1.2e-07   32.2   0.0      2e-07   31.6   0.0    1.3  1  AAA_16           AAA ATPase domain
    1.2e-06   28.8   0.0    6.7e-06   26.3   0.0    1.9  2  AAA_33           AAA domain
    6.3e-06   26.2   0.0      9e-05   22.5   0.0    2.2  1  MMR_HSR1         50S ribosome-binding GTPase
    1.9e-05   25.2   0.0    3.9e-05   24.2   0.0    1.6  1  AAA_18           AAA domain
    4.4e-05   24.0   0.0      8e-05   23.2   0.0    1.7  1  ABC_tran         ABC transporter
    4.8e-05   23.2   0.2     0.0097   15.6   0.0    2.1  2  AAA_24           AAA domain
    6.2e-05   23.3   0.0    0.00045   20.5   0.0    2.0  2  AAA_22           AAA domain
    0.00078   19.8   0.0     0.0035   17.7   0.0    2.0  2  RNA_helicase     RNA helicase
    0.00085   19.4   0.0     0.0013   18.8   0.0    1.7  1  AAA_14           AAA domain
     0.0012   18.8   0.0      0.002   18.0   0.0    1.5  1  RsgA_GTPase      RsgA GTPase
     0.0014   18.3   2.4      0.014   15.1   0.2    2.5  2  AAA_29           P-loop containing region of AAA domain
     0.0018   18.0   0.0      0.014   15.1   0.0    2.0  1  Viral_helicase1  Viral (Superfamily 1) RNA helicase
     0.0028   17.9   0.0     0.0056   16.9   0.0    1.6  1  AAA_28           AAA domain
     0.0034   17.3   0.0     0.0073   16.2   0.0    1.6  1  NACHT            NACHT domain
     0.0041   16.4   0.0      0.038   13.2   0.0    2.0  1  DUF2075          Uncharacterized conserved protein (DUF2075)
      0.007   16.1   0.0     0.0097   15.6   0.0    1.3  1  AAA_30           AAA domain
     0.0092   16.4   0.1      0.029   14.8   0.0    1.8  2  AAA_17           AAA domain
  ------ inclusion threshold ------
      0.011   15.3   0.0      0.028   14.0   0.0    1.6  1  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.012   15.5   0.0      0.019   14.9   0.0    1.4  1  Rad17            Rad17 P-loop domain
      0.013   15.4   0.1      0.026   14.4   0.1    1.8  1  ATPase_2         ATPase domain predominantly from Archaea
      0.014   15.2   0.1      0.064   13.1   0.0    2.1  2  dNK              Deoxynucleoside kinase
      0.015   15.7   0.3      0.066   13.6   0.3    2.1  1  AAA              ATPase family associated with various cellul
      0.015   14.4   0.0      0.047   12.7   0.0    1.8  2  T2SSE            Type II/IV secretion system protein
      0.018   15.2   0.0       0.22   11.8   0.0    2.2  2  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.019   14.9   0.0      0.025   14.5   0.0    1.4  1  NTPase_1         NTPase
      0.031   14.8   1.9      0.057   13.9   1.9    1.8  1  AAA_23           AAA domain
      0.039   13.9   0.3        0.2   11.7   0.3    2.1  1  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
      0.042   13.4   0.0      0.087   12.3   0.0    1.5  1  AAA_7            P-loop containing dynein motor region
      0.059   12.6   0.1       0.28   10.4   0.0    1.7  2  KAP_NTPase       KAP family P-loop domain
      0.064   12.8   0.0        2.6    7.6   0.0    2.1  2  FeoB_N           Ferrous iron transport protein B
       0.07   13.2   0.1       0.75    9.9   0.1    2.1  2  AAA_2            AAA domain (Cdc48 subfamily)
      0.074   12.8   0.0       0.15   11.8   0.0    1.5  1  Cytidylate_kin   Cytidylate kinase
       0.12   11.5   0.0       0.22   10.6   0.0    1.4  1  NB-ARC           NB-ARC domain
       0.13   12.0   0.0       0.38   10.4   0.0    1.7  2  Thymidylate_kin  Thymidylate kinase
       0.16   10.7   0.0       0.32    9.7   0.0    1.4  1  Adeno_IVa2       Adenovirus IVa2 protein


Domain annotation for each model (and alignments):
>> Guanylate_kin  Guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.9   0.0   9.8e-73   4.9e-70       2     180 ..       2     184 ..       1     186 [] 0.97

  Alignments for each domain:
  == domain 1  score: 234.9 bits;  conditional E-value: 9.8e-73
                    SSEEEEESTTTSSHHHHHHHHHHHSTTTEEE--EEESS---TTS-TTTSEEE--HHHHHHHHHTTTEEEEEEETTEEEEEEHHHHHHHHHTTSEEE CS
  Guanylate_kin   2 rrpvvlvgpsgaGksslkkaLlselpekfgvsvshtTrdprkgevdGkdYyFvskeemekdiskneflEaaefsgnlygtsveaieevlekgkivi 97 
                    +rp+v++gpsgaGks+l k+L++e+p++fg+svs+tTr+pr+gev+GkdY+F + ee++++i++n+f+E+a+fsgn+ygt+v +++ev+ +gk++i
     CCD26359.1   2 SRPIVISGPSGAGKSTLLKKLFQEYPDTFGFSVSSTTRNPREGEVHGKDYNFATVEEFKQMIDANKFIEWAQFSGNYYGTTVDSVKEVSSSGKTCI 97 
                    79********************************************************************************************** PP

                    EE--CHHHHHHHHT.TTTEEEEEEEESSHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHGGGC...SSEEEEESSHHHHHHHHHHHHH CS
  Guanylate_kin  98 LDvdiqavkqlrka.elspiivFikppslkelqrrlksrgkeqeeklakrlaaaekelqeye...fdvvivnddleealkklkelle 180
                    LD+d+q+vk+++ + +l+++++Fi+pps ++l++rl++rg+e+ee+l+krl+aa +e+++++   +d +ivnddl++a+++lk+++ 
     CCD26359.1  98 LDIDMQGVKSVKDKtDLNARYLFIAPPSIDDLRKRLEGRGTETEESLNKRLSAATAEMEYANtgaHDKIIVNDDLDKAYAELKDFIF 184
                    ***********9665********************************************994589*******************985 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0     4e-10     2e-07      25     149 ..       3     177 ..       1     184 [. 0.78

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 4e-10
      AAA_16  25 elvllsGesGvGKsslvrellralekdggiflrgkcdqlesaipysa.laqalareellrqlldeaesaeleawrekleeala................ 106
                 + +++sG+sG GKs+l+++l++++ ++ + f    ++++    p+   +     +   +++ +++ +++++ +w+++    ++                
  CCD26359.1   3 RPIVISGPSGAGKSTLLKKLFQEYPDT-FGFSVSSTTRN----PREGeVHGKDYNFATVEEFKQMIDANKFIEWAQFSGNYYGttvdsvkevsssgktc 96 
                 5689******************99999.88877777777....4433355555566777888888888999*****9999999****999999999999 PP

      AAA_16 107 ................................avpelagaea.......srllellkrll...allsrderplvlvlDdlqwade 149
                                                      +  ++       ++l+  l+++    +++ ++++  ++v Ddl++a +
  CCD26359.1  97 ildidmqgvksvkdktdlnarylfiappsiddL----RKRLEgrgteteESLNKRLSAATaemEYANTGAHDKIIVNDDLDKAYA 177
                 999999999999999999999999888844441....333335566777555555554443347999999999********9865 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.3e-08   6.7e-06       2      76 ..       5      99 ..       5     156 .. 0.79
   2 ?    1.3   0.0      0.69   3.4e+02      31      54 ..     127     150 ..     109     169 .. 0.66

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.3e-08
      AAA_33  2 vllvGlpGsGKstlaerllkklg...avllssdt...................lrrrlfgtdqqsktdytrvldrlyqilnelarkalsagrnvild 76
                +++ G++G+GKstl+++l ++ +   ++ +ss t                   +++++   d ++  ++++++ + y+++ + ++++ s+g+++ild
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEYPdtfGFSVSSTTrnpregevhgkdynfatveEFKQMI--DANKFIEWAQFSGNYYGTTVDSVKEVSSSGKTCILD 99
                5788*******************999888999999999999888887777766666666..33444467888899*********************8 PP

  == domain 2  score: 1.3 bits;  conditional E-value: 0.69
      AAA_33  31 dtlrrrlfgtdqqsktdytrvldr 54 
                 d+lr+rl+g++ ++++ +++ l+ 
  CCD26359.1 127 DDLRKRLEGRGTETEESLNKRLSA 150
                 666666666655555544444333 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.8e-07     9e-05       2      50 ..       5      53 ..       4     160 .. 0.75

  Alignments for each domain:
  == domain 1  score: 22.5 bits;  conditional E-value: 1.8e-07
                EEEEESTTSSHHHHHHHHHTS..TEEESSSTTSSSSEEEEEEEETTEEEEE CS
    MMR_HSR1  2 vaivGrpNvGKStLinaltge..kaivsdkpgtTrdinegrvklkgkeiel 50
                ++i G + +GKStL+++l++e       +   tTr+++eg+v+  gk++++
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEypDTFGFSVSSTTRNPREGEVH--GKDYNF 53
                7899****************96544557889***********9..444332 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   7.8e-08   3.9e-05       1     121 [.       5     144 ..       5     159 .. 0.65

  Alignments for each domain:
  == domain 1  score: 24.2 bits;  conditional E-value: 7.8e-08
      AAA_18   1 IlltGtpGvGKttlakeLskrlgf....gvnlrdvakenglllevdpealdeskrldedkldklldaleenss...............aleegknlvid 80 
                 I+++G++G+GK+tl k L ++  +    g+ ++++ ++ +  +   ++   ++  ++e k++   +++ e+++                + +gk++++d
  CCD26359.1   5 IVISGPSGAGKSTLLKKLFQE--YpdtfGFSVSSTTRNPREGEVHGKD--YNFATVEEFKQMIDANKFIEWAQfsgnyygttvdsvkeVSSSGKTCILD 99 
                 99****************555..4444666666665553333333333..4555555555555555555555555577777777777766678888776 PP

      AAA_18  81 ghlaeleseaakdikk..vvLtasp..eelleRlekRgyeeakik 121
                   ++   s ++k      +   a+p  + l++Rle Rg+e+ +  
  CCD26359.1 100 IDMQGVKSVKDKTDLNarYLFIAPPsiDDLRKRLEGRGTETEESL 144
                 55555554444432224588888887899*********9987754 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.6e-07     8e-05      14      40 ..       5      31 ..       2     157 .. 0.80

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 1.6e-07
                EEEEESTTSSHHHHHHHHTTSS--SEE CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 14 vaivGenGaGKStLlkllagllkpteG 40
                ++i G++GaGKStLlk l +++ +t G
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEYPDTFG 31
                6899*****************998766 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     2e-05    0.0097       3      58 ..       3      65 ..       1      91 [. 0.56
   2 ?    6.1   0.1     0.016         8      23      80 ..      92     178 ..      81     185 .. 0.86

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 2e-05
      AAA_24  3 lkiliyGpsgiGKTtlakel...gpkplfidtekGlksldadkfpdie.......swedfldevve 58
                + i+i Gpsg+GK+tl+k+l    p+++ +    ++   ++++++ ++       ++e+f++ +++
  CCD26359.1  3 RPIVISGPSGAGKSTLLKKLfqeYPDTFGF--SVSSTTRNPREGE-VHgkdynfaTVEEFKQMIDA 65
                5699****************8554444433..3333333333322.22233334444444444444 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.016
      AAA_24  23 gpkplfidtek.Glksldadkfpdie.......swedfldevvel.....................aaeladyktlviDtideleel 80 
                   k+ ++d+++ G+ks++++   +++       s++d+++ ++                       a   a+ k++v D +d+++  
  CCD26359.1  92 SGKTCILDIDMqGVKSVKDKTDLNARylfiappSIDDLRKRLEGRgteteeslnkrlsaataemeyANTGAHDKIIVNDDLDKAYAE 178
                 47999****************99999*******999999999999999999999999999999998888888899999999998865 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     9e-07   0.00045       8      30 ..       5      27 ..       2      71 .. 0.86
   2 ?    0.8   0.0       1.1   5.6e+02      17     101 ..      93     173 ..      90     182 .. 0.72

  Alignments for each domain:
  == domain 1  score: 20.5 bits;  conditional E-value: 9e-07
      AAA_22  8 lvvtGesGtGKTtllrrlleqld 30
                +v+ G+sG+GK+tll++l+++++
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEYP 27
                89******************985 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 1.1
      AAA_22  17 GKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaq 101
                 GKT  l   ++  + +++ ++ +++++f+ +ps  ++++ l+    +++++l++   ++++  + +e a   +++ ++++ D+ +
  CCD26359.1  93 GKTCILDIDMQGVKSVKDKTDLNARYLFIAPPSIDDLRKRLEGRGTETEESLNK---RLSAATAEMEYANTGAHD-KIIVNDDLD 173
                 666666655556556666666788888888888888888888888888888888...888888888877777777.888888877 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.9e-06    0.0035       1      44 [.       5      46 ..       5      76 .. 0.69
   2 ?   -1.1   0.0       5.1   2.5e+03      33      58 ..     147     172 ..     125     180 .. 0.54

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 6.9e-06
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkkdsvysrnpeddfw 44
                  i+++Gpsg GKStl k+L ++  +++++  +++  +rnp++  +
    CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEYPDTFGFSVSST--TRNPREGEV 46
                  789******************999997776333..455555444 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 5.1
  RNA_helicase  33 svysrnpeddfwdgYtgqevvvidDf 58 
                   ++ + ++e ++ +   + +++v dD+
    CCD26359.1 147 RLSAATAEMEYANTGAHDKIIVNDDL 172
                   33334445555555555666666665 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.6e-06    0.0013       3      27 ..       3      27 ..       1     170 [. 0.80

  Alignments for each domain:
  == domain 1  score: 18.8 bits;  conditional E-value: 2.6e-06
      AAA_14  3 kilvitGaRrvGKTtllkqlikell 27
                +++vi+G+  +GK+tllk+l++e+ 
  CCD26359.1  3 RPIVISGPSGAGKSTLLKKLFQEYP 27
                789******************9987 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     4e-06     0.002     102     122 ..       5      25 ..       1      69 [. 0.81

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 4e-06
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  +v+ G+SG+GKStL+++l +e
   CCD26359.1   5 IVISGPSGAGKSTLLKKLFQE 25 
                  799***************987 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   2.8e-05     0.014      25      39 ..       5      19 ..       1      22 [. 0.90
   2 ?    2.7   0.2      0.21     1e+02       7      40 ..      69      99 ..      63     103 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.8e-05
      AAA_29 25 tlltGpsGsGKSTll 39
                ++++GpsG+GKSTll
  CCD26359.1  5 IVISGPSGAGKSTLL 19
                579***********8 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.21
      AAA_29  7 vNWgtfdghtieidlkgatlltGpsGsGKSTllD 40
                ++W  f+g+ +  ++++   +   s sGK+ +lD
  CCD26359.1 69 IEWAQFSGNYYGTTVDS---VKEVSSSGKTCILD 99
                55666666555555443...4556899***9999 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.9e-05     0.014       1      53 [.       5      59 ..       5     100 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 2.9e-05
  Viral_helicase1  1 ivvhGvpGcGKStlirkllrts..liltvnrptaelltegkpklpnlsvrtvdsf 53
                     iv++G  G+GKStl++kl+++       ++++t+   +eg    ++ +  tv++f
       CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEYpdTFGFSVSSTTRNPREGEVHGKDYNFATVEEF 59
                     799****************997774555555557666776655555555555555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-05    0.0056       2      22 ..       5      25 ..       4      72 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-05
      AAA_28  2 ivitGgestGKTtlleaLaar 22
                ivi+G++++GK+tll++L ++
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQE 25
                9*****************876 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-05    0.0073       1      23 [.       3      25 ..       3      37 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 1.5e-05
                SCEEEEC-TTTCHHHHHHHHHHH CS
       NACHT  1 rlvilqGeaGsGKTtLlqklala 23
                r++++ G++G GK+tLl+kl ++
  CCD26359.1  3 RPIVISGPSGAGKSTLLKKLFQE 25
                689*****************986 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   7.7e-05     0.038       4      48 ..       5      48 ..       2     174 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 7.7e-05
     DUF2075  4 vlVtGvaGtGKtvvllnllaeleddeeertavylsvNhplvlvlr 48
                ++++G +G+GK+ +l +l+ e+  d  + ++   ++N ++ +v  
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEY-PDTFGFSVSSTTRNPREGEVHG 48
                89*******************9.3444444444445555444443 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.9e-05    0.0097      22      79 ..       6      65 ..       2     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.9e-05
      AAA_30 22 vltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLaeelgi.eastiakllkr 79
                v+ Gp G+GK+t+lk+l + + +  g++v   + + +  +v +++ ++ + +  ++++++
  CCD26359.1  6 VISGPSGAGKSTLLKKLFQEYPDTfGFSVSSTTRNPREGEVHGKDYNFaTVEEFKQMIDA 65
                899**************8888888899999888888888887777775344445555544 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.7e-05     0.029       2      25 ..       9      36 ..       8      66 .. 0.82
   2 ?   -1.0   0.0       4.5   2.2e+03      51      58 ..     138     145 ..     103     180 .. 0.61

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 5.7e-05
                E-TTSSHHHHHHHHHHHH....TEEEEE CS
      AAA_17  2 GgPGsGKgtqceklveky....gfthls 25
                G+ G+GK+t+++kl ++y    gf++ s
  CCD26359.1  9 GPSGAGKSTLLKKLFQEYpdtfGFSVSS 36
                99***************95555555544 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 4.5
                 HHHHHHHH CS
      AAA_17  51 leekkelq 58 
                  e ++ l 
  CCD26359.1 138 TETEESLN 145
                 23333333 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.7e-05     0.028       3      23 ..       5      25 ..       4      30 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.7e-05
                EEEEESTTCCHHHHHHHHHCT CS
        cobW  3 tvltGflGsGKTtLlnhllen 23
                +v++G+ G+GK+tLl++l ++
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQE 25
                69***************9876 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   0.0   3.8e-05     0.019      48      73 ..       5      30 ..       2      95 .. 0.71

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.8e-05
       Rad17 48 LLisGPsGCgkstvvkvLskelgikl 73
                ++isGPsG gkst +k L +e+   +
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEYPDTF 30
                589***************98875444 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.1   5.2e-05     0.026      21      49 ..       3      32 ..       1     181 [. 0.75

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 5.2e-05
    ATPase_2 21 eiyfiYGpegsGKtaLlkeiienl.edkdk 49
                ++++i Gp g GK++Llk++ ++  +  ++
  CCD26359.1  3 RPIVISGPSGAGKSTLLKKLFQEYpDTFGF 32
                699****************99887444444 PP

>> dNK  Deoxynucleoside kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   0.00013     0.064       1      23 [.       5      27 ..       5      80 .. 0.90
   2 ?   -1.0   0.0       2.6   1.3e+03     132     152 ..     125     145 ..     116     160 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00013
                EEEEESTTSSHHHHHHHHHCCST CS
         dNK  1 ivveGnIgaGKstlvklLskklg 23
                iv++G+ gaGKstl+k L ++++
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEYP 27
                89**************9887764 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.6
                 -HHHHHHHHHHCTTCCCTTS- CS
         dNK 132 sletclerikkRgreeekkie 152
                 s++ + +r++ Rg e e+  +
  CCD26359.1 125 SIDDLRKRLEGRGTETEESLN 145
                 578889999999999998554 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.3   0.00013     0.066       2      34 ..       6      37 ..       5     180 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.00013
                EEESSTTSSHHHHHHHHHHHHTHEE.EEEETTTC CS
         AAA  2 llyGppGtGKTllakavakelgvef.leisgsel 34
                +++Gp G GK++l k + +e   +f +++s  + 
  CCD26359.1  6 VISGPSGAGKSTLLKKLFQEYPDTFgFSVS--ST 37
                789*****************6433322222..22 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   9.4e-05     0.047     132     155 ..       5      28 ..       1      69 [. 0.85
   2 ?   -1.1   0.0       1.6   8.1e+02     139     156 ..      91     108 ..      89     112 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 9.4e-05
       T2SSE 132 ilvsGgTgsGKttllyallkeink 155
                 i++sG+ g GK+tll  l +e ++
  CCD26359.1   5 IVISGPSGAGKSTLLKKLFQEYPD 28 
                 99**************99998776 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 1.6
       T2SSE 139 gsGKttllyallkeinks 156
                 +sGKt +l + ++ +++ 
  CCD26359.1  91 SSGKTCILDIDMQGVKSV 108
                 8*******9988887765 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00044      0.22       2      40 ..       5      38 ..       4      73 .. 0.70
   2 ?    1.0   0.0      0.91   4.6e+02       8      30 ..      90     112 ..      89     131 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00044
                EEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEE CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsekekstigvdfltke 40
                +v+ G sg+GK++llk++ +     ++  t+g ++++++
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQ-----EYPDTFGFSVSSTT 38
                7899*************994.....45566777765543 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.91
                 TTSSHHHHHHCHCT-CCC-EEET CS
         Roc   8 sgvGKtsllkrfvedkfsekeks 30 
                 s++GKt++l+  +++  s k k+
  CCD26359.1  90 SSSGKTCILDIDMQGVKSVKDKT 112
                 578*****998877766666555 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   0.0     5e-05     0.025       2      24 ..       5      27 ..       4      93 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5e-05
                EEEE--TTSSHHHHHHHHHHHH. CS
    NTPase_1  2 vfiTGppGvGKtTlvkkvlellk 24
                ++i+Gp+G GK+Tl+kk+ ++  
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEYP 27
                79***************998764 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   1.9   0.00011     0.057      23      39 ..       6      22 ..       2     182 .. 0.76

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 0.00011
      AAA_23 23 lItGpNGaGKTTildAi 39
                +I+Gp GaGK+T+l  +
  CCD26359.1  6 VISGPSGAGKSTLLKKL 22
                9************9755 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3    0.0004       0.2      22      52 ..       5      38 ..       1      95 [. 0.72

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.0004
                EEEEESTTSSHHHHHHHHHHHTT--...----TT CS
        TsaE 22 ilLeGdLGaGKTtlvrglakalgve...evkSPT 52
                i+++G+ GaGK+tl ++l +++  +   +v+S T
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEYPDTfgfSVSSTT 38
                7899****************98544445566655 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00017     0.087      34      61 ..       3      29 ..       1      41 [. 0.83

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00017
       AAA_7 34 kpvllvGptGtGKtviikdllkkldkek 61
                +p+++ Gp+G GK++++k+l+++++ ++
  CCD26359.1  3 RPIVISGPSGAGKSTLLKKLFQEYP-DT 29
                799****************999998.44 PP

>> KAP_NTPase  KAP family P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00056      0.28      22      45 ..       4      27 ..       2      61 .. 0.89
   2 ?   -0.8   0.0       1.4   6.9e+02     150     184 ..     141     174 ..      89     178 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00056
  KAP_NTPase 22 vvgLygkWGsGKssllnkledelk 45
                +++++g+ G+GKs+ll+kl +e+ 
  CCD26359.1  4 PIVISGPSGAGKSTLLKKLFQEYP 27
                58999999************9975 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 1.4
  KAP_NTPase 150 lkklqteveelladmektLdalqkrlVvviDdLDr 184
                  ++l +  ++  a+me + + ++   ++v DdLD 
  CCD26359.1 141 EESLNKRLSAATAEMEYANTGAHD-KIIVNDDLDK 174
                 444555555556666666666444.4567788886 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.11        55       3      31 ..       5      33 ..       3      57 .. 0.68
   2 ?    7.6   0.0    0.0052       2.6      18      63 ..      66     111 ..      62     118 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.11
                EEEEESTTSSHHHHHHHHHTTSEEEEEST CS
      FeoB_N  3 valvGnpnvGkttlfnaltgakqkvgNwp 31
                +++ G   +Gk+tl+ +l + + +   ++
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEYPDTFGFS 33
                67889999*********998876665554 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0052
                 HHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSS CS
      FeoB_N  18 naltgakqkvgNwpGvtvekkegklklkgkeveivDlPGiYslsay 63 
                 n+  +  q  gN+ G+tv+  +   +  ++ +  +D+ G+ s+++ 
  CCD26359.1  66 NKFIEWAQFSGNYYGTTVDSVKEVSSSGKTCILDIDMQGVKSVKDK 111
                 5666677888*********988888856666666899999888765 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.6     3e+02       6      25 ..       5      24 ..       3      75 .. 0.74
   2 ?    9.9   0.1    0.0015      0.75      35      82 ..     124     177 ..      85     182 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.6
                EEEE--TTSSHHHHHHHHHH CS
       AAA_2  6 illlgptgvGktelakalae 25
                i + gp+g Gk+ l k+l +
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQ 24
                67899*****9997776655 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0015
                 EEEEEGGG---..----THHHHHHHHHTTT-HHHHTTS....EEEEETGGG--- CS
       AAA_2  35 liradaselle..eeevehlvsrligappgyvgaeegG....ivllDEidKihp 82 
                   + d ++ le  + e e+++++ + a+++  ++++ G    i+  D++dK+ +
  CCD26359.1 124 PSIDDLRKRLEgrGTETEESLNKRLSAATAEMEYANTGahdkIIVNDDLDKAYA 177
                 55666677777777899**********************************976 PP

>> Cytidylate_kin  Cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0    0.0003      0.15       1      21 [.       5      25 ..       5      38 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.0003
                    EEEE-STTSSHHHHHHHHHHH CS
  Cytidylate_kin  1 iaiDGPagsGKssvaralaek 21
                    i i GP+g+GKs++ ++l ++
      CCD26359.1  5 IVISGPSGAGKSTLLKKLFQE 25
                    7899**********9999765 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00045      0.22      23      45 ..       5      27 ..       2      36 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00045
                EEEEESTTSSHHHHHHHHCCSHC CS
      NB-ARC 23 valvGmgGvGKttlakqilnksd 45
                + ++G  G GK+tl+k+ ++++ 
  CCD26359.1  5 IVISGPSGAGKSTLLKKLFQEYP 27
                679***************99865 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00076      0.38       2      86 ..       8      99 ..       7     102 .. 0.71
   2 ?   -0.6   0.0       1.8   9.2e+02     130     154 ..     128     152 ..      99     183 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00076
                     EESTTSSHHHHHHHHHHHHHHTTE...EEEESSSTTSHHHHHHHHHHH.....TCS---HHHHHHHHHHHHHHTTHHHHHHHHHTT-EEEEE CS
  Thymidylate_kin  2 EGlDGaGKttqaellkerlkeegik..vvltrepggteiGekirelll.....keeeleeqteallfaadriehleekikpalkqgktvivd 86
                      G  GaGK+t +++l + +++        +tr p+++e+  k  +  +     ++ + ++  e   f+ + + ++++++k+  ++gkt+i+d
       CCD26359.1  8 SGPSGAGKSTLLKKLFQEYPDTFGFsvSSTTRNPREGEVHGKDYNFATveefkQMIDANKFIEWAQFSGNYYGTTVDSVKEVSSSGKTCILD 99
                     6899***********99998765444667889998888866544433323332333333344888888888888889999988889988887 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 1.8
                      HHHTSCCTTSSTTTSHHHHHHHHHH CS
  Thymidylate_kin 130 valkRlakrdeldeeeeeqldflrk 154
                         kRl+ r+++ ee   ++ +  +
       CCD26359.1 128 DLRKRLEGRGTETEESLNKRLSAAT 152
                      4456666776633333333322222 PP

>> Adeno_IVa2  Adenovirus IVa2 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00065      0.32      91     108 ..       6      23 ..       2      29 .. 0.91

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00065
  Adeno_IVa2  91 viyGPtGsGksqllrnli 108
                 vi+GP G+Gks ll++l 
  CCD26359.1   6 VISGPSGAGKSTLLKKLF 23 
                 8**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       714  (0.0398237); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                       125  (0.00697194); expected 17.9 (0.001)
Passed Fwd filter:                        36  (0.00200792); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.44
# Mc/sec: 1273.98
//
Query:       CCD26360.1  [L=654]
Description: hypothetical protein NDAI_0H01860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.3e-70  236.8  33.8    4.1e-70  236.5  33.8    1.1  1  Na_H_Exchanger  Sodium/hydrogen exchanger family
  ------ inclusion threshold ------
      0.061   13.2   2.8       0.14   12.1   1.0    2.1  2  Myc_target_1    Myc target protein 1
        3.4    8.0  18.0      0.071   13.4   1.4    4.4  5  DUF4064         Protein of unknown function (DUF4064)


Domain annotation for each model (and alignments):
>> Na_H_Exchanger  Sodium/hydrogen exchanger family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.5  33.8   6.9e-74   4.1e-70       3     380 ..      71     485 ..      65     486 .. 0.93

  Alignments for each domain:
  == domain 1  score: 236.5 bits;  conditional E-value: 6.9e-74
                     HHHHHHHHHHH.H.HHHTT.SXHHHHHHHHHHHHTTTTTS..........HHHCHCCHHHHCHHCCHHHHCTCGCCTGCCTHHHHHHHHHHHHHH CS
  Na_H_Exchanger   3 llillallvgl.l.arrlk.lpeivgliiaGlllGpsglg....lieps.eedlevlselglilllFlaGleldlrelrknlksilllallgvli 89 
                     l +++al + + l  r+++ ++e+v+ i++G+++G++++      i+++ ++ ++++++++l+++++++G+el+ ++++ n  sil +a++g++i
      CCD26360.1  71 L-LISALWSSYyLtQRKIRaVHETVLSIFYGMVVGLIIRLspgnYIQDTvTFNSSYFFNVLLPPIILNSGYELNQENFFNNMVSILTFAIPGTFI 164
                     3.33344444467799999*******************99555455555********************************************** PP

                     HHHHHHHHHH.H.....HTXTTCHHHHHHHHHHHTSSXHHHHHHHC.CCCTSTCCCCCCHHHHHHHHHHHCCCCCHHHHHHTXXXXXTSSSTSXH CS
  Na_H_Exchanger  90 tvvliGlllyll.....lilgiplleallfgailsatdpvvvlailkeegrvperlgtlllgesvlnDavavvllavllalakeeaggetsllll 179
                     +++++G+++yl+       + i++++al +ga lsatdpv++l+i+ ++ +v+ +l+t+++ges+lnDa+++v++  +++++ ++ +  +sl+ +
      CCD26360.1 165 SACVLGTIVYLWtalglESVHISFVDALSVGATLSATDPVTILSIF-NAYQVDPKLYTIIFGESLLNDAISIVMFETCQKFH-GQPAKFSSLFEG 257
                     **********99**9987789*************************.**********************************9.99********** PP

                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHS..CTHHHHHHHHHHHHHHHHHHHHHTSXXXHHHHHHHHHHHHHHHHHHTTHHHH....HHHHHH.. CS
  Na_H_Exchanger 180 lliflvvavgglllglvigwllrlitrft..dddrelevllvlllallaallaellgvsgilgaflaGlvlseyefsnklsek....lesfre.. 266
                     ++ f+  + ++ll+g+vig +++l++++t  ++ +++e +++ll+a+ +++++  +++sgi+  +++G++l++y++ n +s +    ++++++  
      CCD26360.1 258 IGLFMMTFMVSLLIGVVIGIVVALLLKHThiRRYPQIESCIILLIAYESYFFSNGCHMSGIVSLLFCGITLKHYAYYN-MSRRtqitVKYIFQll 351
                     ************************************************************************999999.5655567788888888 PP

                     .HHHHHHHHHHHHHHSXHHHHHXXHHHHHHHHHHHHHHHTHHHHHHHHHTTTX........................SSXHHHHHHCCCCSS.BH CS
  Na_H_Exchanger 267 .glfnplfFvlvGlsldlkvlnnhlsvlilvllilvaillgrilavflllrll........................glslrealiigfgglqrg 336
                       l ++++F+++Gl+l+ +v    ++ ++l++++ ++i ++r  avf+l+r++                         ++ + +++ +++gl rg
      CCD26360.1 352 aRLSENFIFIYLGLELFTEVE--LVYKPLLIIVTAISICVARWCAVFPLSRFVnwiyrmktlrsmsgtmgdrmsvpeEIPYNYQMMTFWAGL-RG 443
                     8****************6666..5****************************************************99**************.** PP

                     HHHHHHHHHHHHHXHHHHTTSSTTTCSTSXHHHHHHHHHHHHHH CS
  Na_H_Exchanger 337 avalalaalgpalgllarelyallivvvlftvlvqGlslkpllk 380
                     av +ala+ ++ +  ++ +l+a+++vvv++tv+v+G++++ +l+
      CCD26360.1 444 AVGVALALGLQGE--YKFTLLATVLVVVVLTVIVFGGTTAGMLE 485
                     *************..99999*******************98885 PP

>> Myc_target_1  Myc target protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.15   9.2e+02      18      35 ..      90     107 ..      79     110 .. 0.81
   2 ?   12.1   1.0   2.3e-05      0.14      21      50 ..     261     290 ..     251     295 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.4 bits;  conditional E-value: 0.15
  Myc_target_1  18 ledlilaFcvSmvvGLll 35 
                   +++ +l+ +  mvvGL++
    CCD26360.1  90 VHETVLSIFYGMVVGLII 107
                   67889999999****998 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 2.3e-05
  Myc_target_1  21 lilaFcvSmvvGLllgaliyvlltwlsrrr 50 
                    +++F+vS+++G+++g+++ +ll     rr
    CCD26360.1 261 FMMTFMVSLLIGVVIGIVVALLLKHTHIRR 290
                   5799******************98877666 PP

>> DUF4064  Protein of unknown function (DUF4064)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.033     2e+02      47      73 ..      50      76 ..       5      86 .. 0.60
   2 ?   -0.2   2.8       0.2   1.2e+03      14      80 ..      94     175 ..      93     181 .. 0.67
   3 ?   13.4   1.4   1.2e-05     0.071      48      86 ..     249     287 ..     218     310 .. 0.71
   4 ?   -3.9   0.0       2.8   1.7e+04      12      23 ..     316     327 ..     312     341 .. 0.68
   5 ?   -1.6   0.2      0.55   3.3e+03      79      95 ..     450     469 ..     418     488 .. 0.60

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.033
     DUF4064 47 gedasavleflstllivlgvialiaiv 73
                +e+++ v+e++s+  +++++++li+++
  CCD26360.1 50 DEVSPVVEEMFSSWALFIMLFLLISAL 76
                444455556666666666666666654 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.2
     DUF4064  14 ilgillglllllflfllssgefsqeltee..............qalsgedasavleflstllivlgvi.aliaivlgivgal 80 
                 +l+i++g +++l++ l+  ++ +++ t++              ++  + +++++   + + l++++ + ++ a vlg +  l
  CCD26360.1  94 VLSIFYGMVVGLIIRLSPGNYIQDTVTFNssyffnvllppiilNSGYELNQENFFNNMVSILTFAIPGtFISACVLGTIVYL 175
                 7899999999999999999999999999999999999998777444444444444444333333333325555566665555 PP

  == domain 3  score: 13.4 bits;  conditional E-value: 1.2e-05
     DUF4064  48 edasavleflstllivlgvialiaivlgivgalllkknk 86 
                 ++ s+  e ++ ++++++v +li  v+giv alllk+ +
  CCD26360.1 249 AKFSSLFEGIGLFMMTFMVSLLIGVVIGIVVALLLKHTH 287
                 34455556667788999999****************765 PP

  == domain 4  score: -3.9 bits;  conditional E-value: 2.8
     DUF4064  12 Ggilgillglll 23 
                 +gi+++l+++++
  CCD26360.1 316 SGIVSLLFCGIT 327
                 455555555544 PP

  == domain 5  score: -1.6 bits;  conditional E-value: 0.55
     DUF4064  79 alllkknkk...vsGilfii 95 
                 al l +  k   ++ +l+++
  CCD26360.1 450 ALGLQGEYKftlLATVLVVV 469
                 44444444443333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1129  (0.0629706); expected 358.6 (0.02)
Passed bias filter:                      530  (0.029561); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.26s 00:00:00.93 Elapsed: 00:00:00.43
# Mc/sec: 4617.91
//
Query:       CCD26361.1  [L=3166]
Description: hypothetical protein NDAI_0H01870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-94  316.7   0.1    4.3e-94  315.5   0.1    1.7  1  HECT       HECT-domain (ubiquitin-transferase)
      1e-57  196.2   2.7      1e-57  196.2   2.7    2.6  3  DUF908     Domain of Unknown Function (DUF908)
    1.9e-49  168.6   0.1    1.9e-49  168.6   0.1    2.7  3  DUF913     Domain of Unknown Function (DUF913)
      2e-15   55.6   4.5    6.6e-10   38.1   0.2    2.6  2  UBM        Ubiquitin binding region
  ------ inclusion threshold ------
       0.21   12.1   4.7       0.14   12.6   0.2    3.3  2  FidL_like  FidL-like putative membrane protein
        1.9    8.4  11.0       0.19   11.7   0.6    4.4  3  DUF3361    Domain of unknown function (DUF3361)


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.5   0.1   1.4e-97   4.3e-94       2     306 ..    2861    3165 ..    2860    3166 .] 0.96

  Alignments for each domain:
  == domain 1  score: 315.5 bits;  conditional E-value: 1.4e-97
                  HHHHHHT-GGGSSEEESSTTSSSEEE-TTHHHHS.....HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT-.---TCHHHHH-HHHHHHHHHHH.. CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT    2 llskelldpklglfeeesedsgtlypkpssseee.llklfeflGkvlGkaiyeeilldlpfsraflkfllgeekitledleeidpelakslkellsl 97  
                  +ls+++++p++ lf   s+d+ t++p+++s  +  +l+ f+f+G+vlGkai ++  ld +fsr ++k +lg ++++l+d+e+id +++ksl ++l  
  CCD26361.1 2861 VLSRQMFNPDYALFLPVSSDKTTFHPNRTSGVNPeHLSFFKFIGMVLGKAIRDQCFLDCHFSRDVYKNMLG-KPVSLKDMESIDLDYYKSLVWIL-- 2954
                  699***********999**********998666697899********************************.6**********************.. PP

                  HS-GGG...GT-BSEEEEE.TTEEEEEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS. CS
                  xxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   98 esnteevedlaLtFtipen.agasatieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfsevipskalklfdaeelellisGedel 193 
                  e++ ++v  ++ tF+++++ +g+++ i+Li+nG+n+pVt+enkk+Y+k++v+y+l++sv++q+++fl+Gf+++ip++++++fd++elell+sG  + 
  CCD26361.1 2955 ENDITDV--IEETFSVETDdYGEHKVIDLIENGSNVPVTEENKKDYVKKIVEYKLHTSVKEQMDNFLRGFYSLIPKELVSIFDEQELELLVSGLPD- 3048
                  6677555..888*****99****************************************************************************7. PP

                  --HHHHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-.....B--EEEEE-S..-TTS--EEEGGGTEEEE---S CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  194 idvedlrrnteykggynaesetiewlweilkefspeekrlfLqFvTgssrlPlgGfael.....hpkftierkskedetrLPtahTCfnlLklpdYs 285 
                  idv+d+++nt+y++ y++++++i+++w+++++f+ ee++++LqFvTg+s++Pl+Gf+el       kf i+r    +++rLP++hTCfn+L+lp Y+
  CCD26361.1 3049 IDVDDWKNNTNYTN-YTSNDKQINYFWRAVRSFDVEERARLLQFVTGTSKVPLNGFKELsgvegVCKFAIHRDY-GSTDRLPSSHTCFNQLNLPAYN 3143
                  ************97.********************************************9999999******66.9********************* PP

                  SHHHHHHHHHHHHHHH.H--XX CS
                  xxxxxxxxxxxxxxxx.xxxxx RF
        HECT  286 skeilkekLltAieet.egFel 306 
                  s+e+l+  Ll+Ai+e+ egF+l
  CCD26361.1 3144 SYETLRGSLLIAINEGhEGFGL 3165
                  ********************98 PP

>> DUF908  Domain of Unknown Function (DUF908)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.2   2.7   3.3e-61     1e-57       1     357 [.       4     316 ..       4     317 .. 0.92
   2 ?   -1.7   0.7      0.51   1.5e+03     135     244 ..    2133    2251 ..    2036    2286 .. 0.64
   3 ?   -2.9   0.2       1.1   3.3e+03     191     265 ..    2481    2558 ..    2460    2590 .. 0.58

  Alignments for each domain:
  == domain 1  score: 196.2 bits;  conditional E-value: 3.3e-61
      DUF908   1 gdkelvlaiLrftrlLLenCgNrsiYnSsehLndLLnttdldvllatLrlllrlaqrysasnkrtksasrtvqqallanhynisldrllklAqpfpktp 99 
                 +d+++++++++f++ LL n+ + + Y  +  +n++Ln++++++ +++L+++++ a r  ++++++ +++          + +i +++llk+A ++p+++
  CCD26361.1   4 KDEKVCVTLMEFIERLLTNTADMQYYDYLGTINSFLNCPTYKIKYHVLKIMSINAFRTVKAHQSIMTKPPF--------NDPILRTNLLKVALALPSSV 94 
                 6999********************************************************88888888765........7899***************8 PP

      DUF908 100 vsdssakaasekkastteyaldlvslakedskvlpsewgdvkvtYYkkssseeqkaesksskeeaseslissspstPtplrrssklgktssspsspakt 198
                 + d               ++++l++l++e++k+ ps+w ++k+ YY ++ +++++++s ++++++s      + +       +s             + 
  CCD26361.1  95 PDDD-------------GDHFSLIDLFTEKKKY-PSNWTKLKYPYYIQERRNNKASNSITTSQTTS------AIN-------TS-------------TM 153
                 7774.............899*************.****************9998877766433322......112.......22.............22 PP

      DUF908 199 stpskaaksqeglktfeipesevsskslyellakavekiPkesryellhririakalnsssee....RqqllaiRllAitnlayihpesefqtkllkqd 293
                    s++  s+++l+ + ++++ +++++l+el++k++e +P+++++++  ++ +ak+++++see    R+ +++ +++Ai+++ +i+  ++++ k+++ d
  CCD26361.1 154 VLASTPVLSSSSLRKLILNKEDLQKYTLQELYNKGMEVLPHKNWFDYSLKVAVAKSFSDDSEEnkelRKLIIKTKFMAIALTNCIFVPPQVSAKFFEVD 252
                 33344555678899************************************************9************************************ PP

      DUF908 294 pdlvyqLaeLihpeesevprelqtaaleaLealarkkaklsdvlsaLnanvnhGiLlyvlRkav 357
                 ++ ++ L+++i+ +e +++++l++ al +L+++++k++++sd+++ +++n++hG+L+++lR+++
  CCD26361.1 253 QYAFNSLTDFISGDEAKLSTDLKLDALFTLNCISSKHIWCSDIMRNIGGNMSHGLLFQILRYLN 316
                 *************************************************************986 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.51
      DUF908  135 sewgdvkvtYYkkssseeqkaesksskeeasesli.........ssspstPtplrrssklgktssspsspaktstpskaaksqe.glktfeipesev 221 
                    w+d+   +Y + s ++  ++   ++ + ++++          + +++  ++l+rs++  ++++ + sp++++ p++++++++ +  ++ei  s+v
  CCD26361.1 2133 ARWKDIYDMFYDSRSYSSYLTSRIINRLYHKSLDLwrkdkehalEVAKKEAEELQRSKNIREEKKLSISPESEHVPESQSNTDShEPVYVEIEGSTV 2229
                  5566666666666666555555555544444443366666666633333444555666665533333333333333333333330335999999888 PP

      DUF908  222 sskslyellakavekiPkesrye 244 
                        ++  + ++ +P++ r e
  CCD26361.1 2230 DIGG-TDIDPEFLSALPDDMRAE 2251
                  5422.344444444444444444 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 1.1
      DUF908  191 spsspaktstpskaaksqeglktfeipesevss..kslyellakave..kiPkesryellhririakalnssseeRqql 265 
                  +pss++k+++p+k++ +    ++f + ++++ +  ++l++ll ++++      ++  +  ++ r  k l++++ +R ++
  CCD26361.1 2481 KPSSKNKKENPAKNE-KLPLKHLFSLLDKKIITdeTQLMDLLTRIIQicTQRLDKLIKTSAKNRWKKKLQQPDVSRDDI 2558
                  344443333333332.222233777777776665556888888888755333444555555555555555555555555 PP

>> DUF913  Domain of Unknown Function (DUF913)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.6   0.1   6.3e-53   1.9e-49       3     253 ..     378     617 ..     376     665 .. 0.91
   2 ?   -3.2   0.0         1     3e+03     270     344 ..    1521    1608 ..    1487    1614 .. 0.57
   3 ?   -3.0   0.7      0.88   2.6e+03     284     326 ..    1825    1904 ..    1783    1916 .. 0.50

  Alignments for each domain:
  == domain 1  score: 168.6 bits;  conditional E-value: 6.3e-53
      DUF913   3 avrvlDtlitniqnafqafanakgldalidrledevdealeevkegkgtpaelrssvvdyeipfqrqqlLKslLkfikhlmqssgsgtdrllrnlidss 101
                 a r+l ++i n++ +++ f+n++g+++li+ +++e++ al+++ + ++tp+ +++s   y i++ +   +KslL ++ +l++   ++ ++++rnlids+
  CCD26361.1 378 AARLLTQMIKNTE-TATEFINNDGFNILINTISYEIEYALNNADK-SHTPQYVNAS---YSISYVQMEYIKSLLLLVLKLLR---TDSSDRIRNLIDSP 468
                 6688999999999.5669************************999.6777777766...9*********************9...999999******** PP

      DUF913 102 qLlksLrkIienakvfGssvwslAvnilsdfihnePtslavlqeaglteslLeallakgilpsrEvlasiPnvlsalcLNnaGlelfksskaleslfei 200
                  Ll sL k ++n+ +fG  ++  + +i++++i+nePt ++vl eag++  +++   ++ + ps++ ++ +P v+salcLN++Gl+ +k+++ ++ lf+ 
  CCD26361.1 469 -LLVSLMKLLSNKDIFGNAILQYSLDIVQSVINNEPTIYSVLVEAGIIPYIIDN-FQEFVAPSADLIILLPDVISALCLNTEGLKKVKERNLVQYLFNC 565
                 .*****************************************************.******************************************** PP

      DUF913 201 fespehvkamesdgdlasnlGssfdELvRhhpsLktaiikavikmlarvvelg 253
                 +++++   ++    d  +  G s+dEL+Rh p+Lk++i +a +k+++++ e  
  CCD26361.1 566 LLDKDCTDIL-AYYDEGAEYGASIDELARHYPDLKEPIETAFFKLVEKLPEHI 617
                 **********.99999999*****************************97654 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1
      DUF913  270 skseasssssssetkeeek...............ssededvemedaeeetesesdeseeseeekeknslldyilnvakFLeallsnnslc 344 
                  ++++ass+++++++++                   se++ + + + +++++ + + +++ + ++++n+++ y+  + k L  l++  ++c
  CCD26361.1 1521 TENTASSANAKTSAHT--LkstgiihllisqlvaVSEKDWISEPEPHDKPKPTLTRTNDVKVDPTRNPICGYMMFLLKTLIELITSYKQC 1608
                  2222222222222222..134567777777776422222233333345666666667777777888888888888888887777666666 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.88
      DUF913  284 keeek.................sseded.vemeda.......................eeetesesdeseeseeekeknslldy 326 
                  ++ee                  +   ed +e++                         eee + ++d++e+s++ +++++++dy
  CCD26361.1 1825 DKEEApnmfrnsalgmydvediE---EDdEEDD-DsligddgiafvnddddfqiiftdEEEGRLTDDDNESSSSAESESDAADY 1904
                  11111234445666777764331...2212222.23667778888888888888887633333333334444444444445555 PP

>> UBM  Ubiquitin binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.2   2.2e-13   6.6e-10       5      35 .]    2232    2262 ..    2228    2262 .. 0.89
   2 !   18.5   0.7   3.2e-07   0.00095       6      32 ..    2271    2297 ..    2267    2300 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 2.2e-13
         UBM    5 ppegiDpsFLaaLPpdLReEVLaqqdeeqlr 35  
                    ++iDp+FL aLP+d+R+EV aq+ +e+++
  CCD26361.1 2232 GGTDIDPEFLSALPDDMRAEVFAQHIRERRA 2262
                  4566*************************96 PP

  == domain 2  score: 18.5 bits;  conditional E-value: 3.2e-07
         UBM    6 pegiDpsFLaaLPpdLReEVLaqqdee 32  
                    +i+ +FL+a P+d+R  +L+ +++e
  CCD26361.1 2271 SREINQDFLDAIPEDIRDDILEHEADE 2297
                  456********************9998 PP

>> FidL_like  FidL-like putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.7       4.2   1.3e+04       8      50 ..     111     153 ..     109     181 .. 0.57
   2 ?   12.6   0.2   4.8e-05      0.14      16      74 ..    2251    2309 ..    2248    2313 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 4.2
   FidL_like   8 krlylqrkvkfsYsskresadedtYrlsisqssissiDetpdv 50 
                 k++y    +k++Y ++ ++ ++++ + si+ s+  s  +t   
  CCD26361.1 111 KKKYPSNWTKLKYPYYIQERRNNKASNSITTSQTTSAINTSTM 153
                 5556666788888777776666666666666655544444333 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.8e-05
   FidL_like   16 vkfsYsskresadedtYrlsisqssissiDetpdvifdkflremsdskdslllevkkln 74  
                  + f  +  + +a+  + ++++ +++++++D +p++i d +l+   d+++s  l  ++ +
  CCD26361.1 2251 EVFAQHIRERRAEAVHHNIQSREINQDFLDAIPEDIRDDILEHEADESSSSHLTQTHTD 2309
                  556644445566777999***********************777777777777666555 PP

>> DUF3361  Domain of unknown function (DUF3361)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.6   6.3e-05      0.19       3     109 ..     392     525 ..     390     562 .. 0.80
   2 ?   -1.2   0.1      0.59   1.8e+03       6      67 ..     983    1043 ..     980    1055 .. 0.61
   3 ?   -1.2   0.3      0.59   1.8e+03      54      87 ..    2557    2590 ..    2550    2620 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.3e-05
     DUF3361   3 AqeFisrdGlkllvkiveegke........................sgeilayaLtafleLmdhgiv..sWdtlsdeFikkiasivnks.aadasilqr 74 
                 A+eFi++dG ++l++ +  + e                        + e ++ +L   l+L+  +      + +++  +   ++ ++++    + ilq 
  CCD26361.1 392 ATEFINNDGFNILINTISYEIEyalnnadkshtpqyvnasysisyvQMEYIKSLLLLVLKLLRTDSSdrIRNLIDSPLLVSLMKLLSNKdIFGNAILQY 490
                 89***************9986678889999999******999988877777777777777776644310445678888999999999996677****** PP

     DUF3361  75 slaiLesivlnsselyelvekevtlesLiehLqss 109
                 sl+i++s++ n+ + y+++ ++  ++ +i+ +q+ 
  CCD26361.1 491 SLDIVQSVINNEPTIYSVLVEAGIIPYIIDNFQEF 525
                 ****************9999888888888888765 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.59
     DUF3361    6 FisrdGlkllvkiveegkesgeilayaLtafleLmdhgivsWdtlsdeFikkiasivnks.aa 67  
                  F +++G++l ++++++    +++      + +e +++ ++s d+l+ +++ +  +++nks ++
  CCD26361.1  983 FYQKGGYTLYAEMIQKL--FQRMSRIEDVSVVENVNYINTSDDVLNLSCLINCLTFLNKSmQK 1043
                  66677777777777775..33444444456777777777777777777777777777776333 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.59
     DUF3361   54 FikkiasivnksaadasilqrslaiLesivlnss 87  
                   i k + i++  + ++++ q+ l+i+ ++ + ++
  CCD26361.1 2557 DIMKLVAIIKLDSCNTKVFQQTLNIMLNLSVFNN 2590
                  5778888899899999999999999877644333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.46u 0.29s 00:00:01.75 Elapsed: 00:00:00.49
# Mc/sec: 19486.81
//
Query:       CCD26362.1  [L=913]
Description: hypothetical protein NDAI_0H01880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-84  283.2   2.6    3.3e-84  283.2   2.6    2.8  3  MSC       Man1-Src1p-C-terminal domain
    1.4e-16   59.9   1.0    5.6e-16   58.0   1.0    2.2  1  HeH       HeH/LEM domain
  ------ inclusion threshold ------
        1.9    8.5   5.8       0.81    9.7   1.8    2.4  2  HAD_2     Haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> MSC  Man1-Src1p-C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.2      0.55   3.3e+03     110     218 ..      88     131 ..      57     168 .. 0.55
   2 !    4.0   1.1    0.0048        28     105     231 ..     398     553 ..     385     564 .. 0.59
   3 !  283.2   2.6   5.5e-88   3.3e-84       1     338 []     566     907 ..     566     907 .. 0.96

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.55
         MSC 110 elLreknakvecgeskddeekakksglseeeLkeslsekksksiskeefeelwkealkeLkkeeeivvredsesese......ksskekkkllrstsla 202
                 e+ ++                                                                              ++ ++++ +l+s++++
  CCD26362.1  88 EEDEN-----------------------------------------------------------------------RnlhvktEDANSSSPQLKSNKKK 115
                 22222.......................................................................12333322333333444444444 PP

         MSC 203 klslkcrlrrsvretl 218
                 +++ + + +r+ r+ l
  CCD26362.1 116 NITDREKSERKKRKKL 131
                 4444444444333333 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0048
         MSC 105 akkalelLreknakvecgeskdde..ek.............akksglseeeLkeslsekksksiskeefeel...wkealkeLkkeeeivvredseses 185
                   k++e+L+e  +  e ++ ++ e  e+             + +++ + + L + l+e ++k  ++ e ++l    ++ l e+ +e++i   ++s++++
  CCD26362.1 398 GAKVEEELEELEGLKETKKYEKLEnpEEpeeieefeeikpnNIEPAANGQVLSSYLNEVNAKNNDEVEKNDLlkpIENDLLEIVNENNIQPGYVSSKSN 496
                 555555555555555555544444321134566677777777888888899999999977777777777777333556666677778887777777666 PP

         MSC 186 e...........ksskekkkllrstslaklslkcrlrrsvretlaryrllllgllll 231
                 e           k+++++kk ++ ++l++   + r+ + +r+ ++r +l ll  +l 
  CCD26362.1 497 EtvtatsnslkdKRHEKHKKKYKNNTLNSTRRRNRIAVFLRRNYNRTNLKLLLQFLP 553
                 678888888888455555555555555555555555555555555555554444333 PP

  == domain 3  score: 283.2 bits;  conditional E-value: 5.5e-88
         MSC   1 lllvllilfglwYreekiavGyCgtgsetnsileeeeee.....eeslleslkPkCtpCPehAiCysnlevkCepgyvlk..phplslggllPlppsCv 92 
                 ll++++i+f+lwYree+i vGyCg++s ++sil+ + e+      + +l+++kPkC pCP++AiC+snl ++C p+y+ +  +++lsl+gl+PlppsC+
  CCD26362.1 566 LLFAIPIVFALWYREERILVGYCGHES-VQSILSLSIESpffscLDTILSPFKPKCLPCPANAICHSNLATECIPHYETSafSSLLSLYGLIPLPPSCE 663
                 6899***********************.9999999888899999999999***************************998668**************** PP

         MSC  93 p.dsekerkvkevakkalelLreknakvecgeskddeekakksglseeeLkeslsekksksiskeefeelwkealkeLkkeeeivvredsesese.... 186
                 p ++ek+++++++ +++l++L+++na+ ecg+s d+      sg++e eL++++++ +s++i+ke+++elw ++ ++Lk++++i +++ +  ++     
  CCD26362.1 664 PiETEKSKELNQITSELLSVLHHQNAHLECGNSADNG----LSGMNEGELYNEFMSYRSPWINKEQYSELWVRVKAKLKNSKDIEWHYIHPYSNGslpt 758
                 *99******************************7776....***********************************************999877799*9 PP

         MSC 187 ..ksskekkkllrstslaklslkcrl.rrsvretlaryrllllglllllllilylrsrlrsrraekerveelvkevlerLkkqkkkhaedpstapepyl 282
                   +s++e  +++rs+s++++ ++c l + ++   l++  ++++ l+ll+++i+++++++++r +e++ +++l+k+++++Lk +k+++ e+p      ++
  CCD26362.1 759 nsTSNTEIVTQFRSHSKKYVRVTCSLpKIEILPKLEEALYSVAFLILLFITIKVAKNEWTRRLKEQSYIRNLIKIAIQELKVNKREQIESP------FV 851
                 999999999****************94568999999999999999**************************************99988888......** PP

         MSC 283 slvqLRDdvLqdehslkernrlWkkvekvveqnsnVrtsleevhGeimrvWeWiGs 338
                 ++  ++ ++L+d ++++++n++Wk++++++eqn nV t+++e +Geim++WeW+G+
  CCD26362.1 852 NVLTIKSKLLNDISDADYKNYVWKEIKQKIEQNPNVLTYHTELQGEIMKCWEWVGQ 907
                 ******************************************************95 PP

>> HeH  HeH/LEM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   1.0   9.3e-20   5.6e-16       1      34 [.      12      45 ..      12      46 .. 0.98

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 9.3e-20
         HeH  1 pksLtVaqLRriLvehgveyPsnaKKadLveLfn 34
                pksL+Va+L+riLveh++++Ps+a+K+ L++Lfn
  CCD26362.1 12 PKSLKVAELKRILVEHDIDFPSKARKPLLIKLFN 45
                9********************************9 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.8   0.00014      0.81      29     117 ..     397     507 ..     382     513 .. 0.77
   2 ?   -1.1   0.1       0.3   1.8e+03      30      92 ..     771     839 ..     758     873 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00014
       HAD_2  29 lselseeelrkliglslrellrklgeseeeee...................kieellrkyneekkk.....kevkpydgvkelLeeLkeagyklgivTs 103
                  +   eeel++l gl+  + ++kl++ ee ee                    + ++l+++n+++++     + +kp++  ++lLe ++e++++ g v+s
  CCD26362.1 397 TGAKVEEELEELEGLKETKKYEKLENPEEPEEieefeeikpnniepaangqVLSSYLNEVNAKNNDeveknDLLKPIE--NDLLEIVNENNIQPGYVSS 493
                 556677888888888888888888877776667788888888889999999999999999999998774344444444..4788889************ PP

       HAD_2 104 ksreaveekleqlg 117
                 ks+e+v+   + l+
  CCD26362.1 494 KSNETVTATSNSLK 507
                 ****9998777665 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.3
       HAD_2  30 selseeelrkliglslrellrklgeseeeee.......kieellrkyneekkkkevkpydgvkelLeeLk 92 
                  + s++++r    l+  e+l kl+e             +i+   +++  ++k+ +  + + +k +++eLk
  CCD26362.1 771 RSHSKKYVRVTCSLPKIEILPKLEEALYSVAflillfiTIKVAKNEWTRRLKE-QSYIRNLIKIAIQELK 839
                 55667777777777777777777776554446666666666666666666666.5555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1949  (0.108707); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.44
# Mc/sec: 6244.42
//
Query:       CCD26363.1  [L=406]
Description: hypothetical protein NDAI_0H01890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.1e-28   97.6  10.0    6.1e-28   97.6  10.0    2.2  2  DHHC         DHHC palmitoyltransferase
  ------ inclusion threshold ------
      0.018   15.4   2.5      0.029   14.7   0.2    2.3  2  Ly49         Ly49-like protein, N-terminal region
       0.13   12.1   0.9        2.9    7.8   0.1    2.2  2  Tmemb_9      TMEM9


Domain annotation for each model (and alignments):
>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   2.0    0.0045        27      55     116 ..      15      72 ..       6      95 .. 0.61
   2 !   97.6  10.0     1e-31   6.1e-28       6     131 ..     115     235 ..     111     238 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0045
        DHHC  55 llylllllilalvlllialvklveeekkseflavtllkkllsilllvlsllfllllgllllf 116
                  l+++ +li+ +++++  +++   +++  ++ ++  +     ++ ++lsll++l+ ++++l 
  CCD26363.1  15 PLATFAILIYGTWAYCHKFCYDQLYKRLHRHATAIVFM----CIECCLSLLIFLMWLQIILL 72 
                 45666667777777777777666666666655554443....44444444444444444433 PP

  == domain 2  score: 97.6 bits;  conditional E-value: 1e-31
        DHHC   6 kfCstcniykpprskHcrvCnrcvlrfDHhCpwlnnciGerNykyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllvlsl 104
                  +C  c+  k +r +H+r+ + c+ rfDH+C w+++ iG++Ny+ F+++++y  lll+++ + ++ +++++v+  ++ e  +++ +     i++++ls+
  CCD26363.1 115 IWCTYCQSLKLERVHHSRQLGYCIFRFDHYCAWIGTVIGRNNYRLFIQYVFYYNLLLAWIWLSISAFIRSIVT-FNEGEDRILNGNI----IVIIILSC 208
                 59********************************************************987666665555555.5555555555554....99****** PP

        DHHC 105 lfllllgllllfhlylilrnlTtieam 131
                 +f+l++g+l+++h+y++++n+T+ e +
  CCD26363.1 209 IFWLMTGALFVTHIYYMINNKTSLEVL 235
                 ***********************9976 PP

>> Ly49  Ly49-like protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.27   1.6e+03       8      32 ..      50      74 ..      44      94 .. 0.66
   2 ?   14.7   0.2   4.8e-06     0.029       7      75 ..     200     267 ..     195     292 .. 0.73

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.27
                XXXXXXXXXXXXXXXXXXXXXXXXX CS
        Ly49  8 vvalgILclllLvtvavLvtkifqy 32
                v ++   cl lL+ ++ L + ++q 
  CCD26363.1 50 VFMCIECCLSLLIFLMWLQIILLQQ 74
                3333334555666666666666654 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 4.8e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX..HH CS
        Ly49   7 ivvalgILclllLvtvavLvtkifqysqekheleetl.nlsqnysimqndinlkeelLrnkslecsilkd 75 
                 i+v++ + c++ L+t a++vt+i+ ++++k +le    ++ ++   m  +i+ k el+ nk+   s+ ++
  CCD26363.1 200 IIVIIILSCIFWLMTGALFVTHIYYMINNKTSLEVLAsKHASKGRGM--KIKSKLELIVNKTEGASAKDE 267
                 66666677********************9999876665555555555..57777799***9977665554 PP

>> Tmemb_9  TMEM9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.018   1.1e+02      56      99 ..      49      96 ..      29     109 .. 0.58
   2 ?    7.8   0.1   0.00049       2.9      52      88 ..     200     236 ..     193     279 .. 0.73

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.018
     Tmemb_9 56 ivivvislLviYmlflllldpllnkr....kkkasyqehtneedetse 99
                iv + i + +  ++fl+ l+ +l ++     +   y  ++++ +++++
  CCD26363.1 49 IVFMCIECCLSLLIFLMWLQIILLQQplkqPTVPPYMIFNDNTNSNNR 96
                333344444444556666655555432221455556666666555554 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.00049
     Tmemb_9  52 vvviivivvislLviYmlflllldpllnkrkkkasyq 88 
                 ++vii+++ i+ L++  lf++ + +++n++++     
  CCD26363.1 200 IIVIIILSCIFWLMTGALFVTHIYYMINNKTSLEVLA 236
                 79**************************884333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1165  (0.0649785); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2775.32
//
Query:       CCD26364.1  [L=438]
Description: hypothetical protein NDAI_0H01900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-73  246.6   2.4    3.4e-73  246.2   2.4    1.2  1  COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
    3.9e-29  100.8   0.1    8.1e-29   99.8   0.1    1.6  1  ERGIC_N          Endoplasmic Reticulum-Golgi Intermediate Com


Domain annotation for each model (and alignments):
>> COPIIcoated_ERV  Endoplasmic reticulum vesicle transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  246.2   2.4   3.8e-77   3.4e-73       1     221 []     160     422 ..     160     422 .. 0.95

  Alignments for each domain:
  == domain 1  score: 246.2 bits;  conditional E-value: 3.8e-77
  COPIIcoated_ERV   1 CYgaeeee..........kCCntCedVreaYkkkgwafkdgeeieqCeregykeklkeqkkegCrikGklevnkvaGnfhiapgksfqeek... 81 
                      CYg+++++           CC+tC+dVr++Y ++gwaf dg++ieqCe+egy++k++++ +egCrikG++ +n+++Gn+h+apgks+++ k   
       CCD26364.1 160 CYGSQDQTeneskskdqkICCQTCNDVRDSYLNAGWAFFDGAQIEQCENEGYVAKINKHLEEGCRIKGQALLNRIQGNIHFAPGKSYSNYKakg 253
                      9999998888999999999*********************************************************************955455 PP

  COPIIcoated_ERV  82 .rhvhdlssyek.eklnfsHtihkLsfgeelpgek..............knPLdgtk...keeeekalmfqYflkvvptkyekldkk..kietn 154
                       +h hd+s y+k +k+nf+H+ih+Lsfg+++++                 nPLd+ k   k+ + + ++f+Y+ k+vpt+ye+ld+k  +iet 
       CCD26364.1 254 sTHRHDTSLYDKvKKMNFNHIIHHLSFGKSIDKVGkndlkdysdrkkfsINPLDDRKvivKDFNPAFHQFSYYTKIVPTRYEFLDEKisSIETA 347
                      69*********988**************9998877999*********999*******999889999******************7743379*** PP

  COPIIcoated_ERV 155 qysvtehersleggkde.......sekglPGvffsYeisPlkvivkeerk.sflhfltslcaiiGGvltvasliD 221
                      q+s+t+h+r+++gg+de       s++g+PG+ff++e+sP+kvi+ke++  ++++fl++++++iG vl+v+++ D
       CCD26364.1 348 QFSATYHSRPIQGGTDEdhpttfhSRGGIPGLFFFFEMSPIKVINKEHHFrTWSSFLLNCITSIGSVLAVGTVFD 422
                      ***************99*******99***********************99********************9988 PP

>> ERGIC_N  Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.1     9e-33   8.1e-29       2      90 ..      10      98 ..       9      99 .. 0.97

  Alignments for each domain:
  == domain 1  score: 99.8 bits;  conditional E-value: 9e-33
                XXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXX-EEEEEE--S--SEEEEEEEEEE.SS-GGGEEEEEEETTECEE CS
     ERGIC_N  2 rrfDafpKvpedltqktlsGgiislvcillilfLllselteylttevkeelvvdksrsekleinlditfpalpCellsldvqDesgehe 90
                 +fDaf+K++e+++ +t +Ggii++ cil++l+Lll+e++++ ++ ++++lvvd++r+ kle+nldi+fp+++C+l++ld++Desge +
  CCD26364.1 10 LSFDAFAKTEEEVRIRTNTGGIITISCILVTLYLLLNEWSQFNSVITSPQLVVDRDRNLKLELNLDISFPNISCDLINLDIMDESGELQ 98
                68***********99***********************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      350  (0.0195214); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3183.47
//
Query:       CCD26365.1  [L=419]
Description: hypothetical protein NDAI_0H01910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-10   38.8   7.8    1.1e-09   37.7   7.8    1.7  1  GATA       GATA zinc finger
  ------ inclusion threshold ------
      0.033   14.3   0.4      0.078   13.1   0.4    1.6  1  DHHC       DHHC palmitoyltransferase
      0.036   14.5   0.2      0.036   14.5   0.2    3.1  3  DUF1180    Protein of unknown function (DUF1180)
      0.094   12.8   0.3       0.28   11.3   0.0    2.0  2  ArfGap     Putative GTPase activating protein for Arf


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   7.8   2.5e-13   1.1e-09       1      32 [.     310     342 ..     310     346 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.7 bits;  conditional E-value: 2.5e-13
        GATA   1 CsnCgttkTplWRrgpdg..nksLCnaCGlyykk 32 
                 C +C+  +Tp+WRrgp g  nk LCn CGl+y+k
  CCD26365.1 310 CGQCRDEETPEWRRGPYGknNK-LCNKCGLFYRK 342
                 9**************7663145.**********9 PP

>> DHHC  DHHC palmitoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.4   1.7e-05     0.078      49     131 ..     190     271 ..     187     274 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.7e-05
        DHHC  49 kyFllfllylllllilalvlllialvklveeekkseflavtllkkllsilllvlsllfllllgllllfhlylilrnlTtieam 131
                 k F+lfl  l+lll+++ +l+ i  ++l  ++k++ ++    +kk+  + ++ + l ++lll+l+l++h+ + +rn  ++ ++
  CCD26365.1 190 KSFILFLHLLTLLLLVTRFLIPIKGQVLNMYNKNNYNYKK-VTKKVRFLKSVKFILKMTLLLMLFLMMHIRNPSRNAPRNKNA 271
                 7899999999998888877766666665555555443333.334455566666667788888888888999988887666555 PP

>> DUF1180  Protein of unknown function (DUF1180)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.7  11.0         4   1.8e+04      78     114 ..      51      93 ..      14     154 .. 0.48
   2 ?   -7.0   2.9         4   1.8e+04       3      15 ..     197     209 ..     194     212 .. 0.61
   3 ?   14.5   0.2     8e-06     0.036       4      77 ..     243     314 ..     240     331 .. 0.66

  Alignments for each domain:
  == domain 1  score: -5.7 bits;  conditional E-value: 4
     DUF1180  78 d.......aggslavvpelssntdkpmtlqrallvlvvvsaavi 114
                 d        +++ + +p ++++     t+   ++v+  v+ +vi
  CCD26365.1  51 DaelitppDSSTGGSSPSMENEI-ATTTVSTNVIVVESVTPTVI 93 
                 23333333333333333332222.22222333333333333333 PP

  == domain 2  score: -7.0 bits;  conditional E-value: 4
     DUF1180   3 rlLalvlLLlllL 15 
                 +lL+l+lL++ +L
  CCD26365.1 197 HLLTLLLLVTRFL 209
                 5566666665555 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 8e-06
     DUF1180   4 lLalvlLLlllLaasaadasralspaasspeaepPlppgataaespgkataieaksaqaaeggngsspragsaa 77 
                 +L ++lLL+l+L   + +  + ++p +++ + +    p++t a ++  + +++ ks++   ++ ++s+++g+  
  CCD26365.1 243 ILKMTLLLMLFLM-MHIRNPSRNAPRNKNAKKNDSGTPNPTDASAATTTATTKVKSPTKTPKS-NPSAKCGQCR 314
                 6889999*99995.6666666777777777777666666677755555555566655554444.4444666655 PP

>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1         2   8.9e+03      63      83 ..      27      47 ..      14      61 .. 0.53
   2 ?   11.3   0.0   6.2e-05      0.28      10      52 ..     304     349 ..     294     410 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2
                HHHHHHHHHTCHHHHHHHHTT CS
      ArfGap 63 deelellkalgNkkaneilea 83
                +ee e+ ++  N  +n+ l +
  CCD26365.1 27 REEAETEATSQNTSTNTSLAN 47
                333333334444444444444 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 6.2e-05
                 SCCCCB-TTT.-SBS--EEETTTT..EEE-HHHHHHHCCS.TTT-- CS
      ArfGap  10 epenkvCaDC.gakeptWaslnlg..vflCieCsgvHrslgvhisk 52 
                 ++ +++C  C  ++ p+W    +g    lC +C  ++r+l +++  
  CCD26365.1 304 SNPSAKCGQCrDEETPEWRRGPYGknNKLCNKCGLFYRKLCKRFGD 349
                 445679****88899********96678***********9666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1719  (0.0958782); expected 358.6 (0.02)
Passed bias filter:                      653  (0.0364214); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2957.13
//
Query:       CCD26366.1  [L=830]
Description: hypothetical protein NDAI_0H01920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-48  165.4   0.8    4.4e-48  163.9   0.8    1.8  1  DUF3453   Domain of unknown function (DUF3453)


Domain annotation for each model (and alignments):
>> DUF3453  Domain of unknown function (DUF3453)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.9   0.8   2.5e-52   4.4e-48       1     224 [.     131     379 ..     131     381 .. 0.86

  Alignments for each domain:
  == domain 1  score: 163.9 bits;  conditional E-value: 2.5e-52
     DUF3453   1 dpavvkkvIqaaasiYplvlrliiknsedsetWekmtalKdeIlrlv...................dssd...ndgvrlaaiKFiervilvqtrgvadr 77 
                 dp  +k++I++ ++ Ypl+l+l++k+s+ +++W+ mt+lK +I++++                   d  +   n+g++la +KF+++vi+ q ++    
  CCD26366.1 131 DPILYKSAILTYSQTYPLLLDLVAKTSN-EKLWSDMTKLKRFIISNWksiyplstcengiisgvdlD--SddkNMGCKLASVKFMSQVIISQISS---- 222
                 67889********************998.9*****************88888887777777777763..03479*******************98.... PP

     DUF3453  78 neskeqseislsqvpdnhpil.sprkLeaEAkrlLdrlLkvlqeasiltsslviatlnslasiakqRpqfankilqallsfnplkk...pnlpptlskl 172
                       s  s   +pdnhp+l s r+Le+EAk +Ld+lL++l ++++++ssl+i++ln la+i k R+q++ +il+ +l+fn++ k   + +    ++l
  CCD26366.1 223 ------SSSSSLAIPDNHPVLgSQRRLEKEAKAILDLLLNYLIDEPMMVSSLFIGILNVLAFILKARSQTTVRILSGILKFNVDGKymiDEKNVLKYRL 315
                 ......23466679***************************************************************************5555555*** PP

     DUF3453 173 qvksvektlkvlllnllk................nssehplqskiqqlleklgallqeiaaviaeetr 224
                 ++++ve+++k++ ++ +k                 ++++   s+++ + +k++++l+ i    +eet+
  CCD26366.1 316 SKRMVERCYKNFAQFGIKnqlikndspssssgaeSNTSTTSSSNFYGKFSKISQTLHII----GEETK 379
                 ******************88888887766666554445666677777777777777777....56655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1526  (0.0851135); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.76u 0.24s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 5784.94
//
Query:       CCD26367.1  [L=187]
Description: hypothetical protein NDAI_0H01930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.3e-44  149.7   0.7    4.4e-44  149.3   0.7    1.1  1  GCV_H     Glycine cleavage H-protein


Domain annotation for each model (and alignments):
>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.3   0.7   2.5e-48   4.4e-44       2     121 ..      63     185 ..      62     186 .. 0.94

  Alignments for each domain:
  == domain 1  score: 149.3 bits;  conditional E-value: 2.5e-48
                 EE-TTSEEEEEETT.EEEEEE-HHHHHHH-SEEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE-GGGTT-TTHHHH-TTTTT--EEEEE CS
       GCV_H   2 yytkehewvkveedgvatvGitdfaqeelgdvvfvelpevgtkvkkgeslaavEsvKaasevyapvsGevvevNekleeepeliNkdpyeegWliklkl 100
                 +ytk+hew++ +edg+a +Gi+++a + lgd +++elpev t +++ges+++vEsvK+ase+y+pv+GevvevN++le++p+liN+dp++ gW++k+kl
  CCD26367.1  63 KYTKDHEWIAAHEDGIAFIGISKYASDSLGDATYIELPEVDTIIEEGESMGSVESVKSASEIYQPVKGEVVEVNTELENKPQLINQDPMGLGWIAKIKL 161
                 8*************************************************************************************************9 PP

                 ...S-GGGGGGSEEHHHHHHHHHH CS
       GCV_H 101 ...snleeleeLlsaeeyekllke 121
                    ++ +  ++Lls ++ye+ lk+
  CCD26367.1 162 dsmNDIDSSDKLLSLDQYEESLKH 185
                 44445555667*********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       369  (0.0205812); expected 358.6 (0.02)
Passed bias filter:                      321  (0.017904); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1380.19
//
Query:       CCD26368.1  [L=142]
Description: hypothetical protein NDAI_0H01940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-24   84.6   1.4    5.7e-24   84.2   1.4    1.2  1  BolA      BolA-like protein


Domain annotation for each model (and alignments):
>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   1.4   3.2e-28   5.7e-24       2      76 .]      58     139 ..      57     139 .. 0.91

  Alignments for each domain:
  == domain 1  score: 84.2 bits;  conditional E-value: 3.2e-28
        BolA   2 teal.kpehlevedeShkhagha.....eaggetHFkvvivseaFegkslvarhRlvyalLkeel.akgiHALslktktpee 76 
                 +ea+ + +h ++ ++S+kha h+     ++++e+H++++ivs++F+g++lv+rh+lvy+lL++e+  +++HAL+l+tkt +e
  CCD26368.1  58 KEAFpDMVHYQIFNDSYKHATHEpmetaTNTTESHLRLEIVSDKFQGLPLVKRHQLVYSLLNHEIeVDQVHALQLTTKTIKE 139
                 66775678****************9998778**********************************5556**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       440  (0.0245412); expected 358.6 (0.02)
Passed bias filter:                      243  (0.0135535); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.26s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1063.26
//
Query:       CCD26369.1  [L=856]
Description: hypothetical protein NDAI_0H01950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-06   27.6  10.4    2.6e-06   27.6  10.4    3.6  3  Mto2_bdg       Micro-tubular organiser Mto1 C-term Mto2-bindi
  ------ inclusion threshold ------
      0.018   15.1   5.9      0.018   15.1   5.9    7.0  7  bZIP_2         Basic region leucine zipper


Domain annotation for each model (and alignments):
>> Mto2_bdg  Micro-tubular organiser Mto1 C-term Mto2-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   1.1       1.4   1.2e+04      17      17 ..     563     563 ..     547     587 .. 0.57
   2 ?    1.5   1.5     0.042   3.7e+02       9      50 ..     622     663 ..     619     665 .. 0.85
   3 !   27.6  10.4   2.9e-10   2.6e-06       3      49 ..     782     828 ..     781     830 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.4
    Mto2_bdg  17 r 17 
                 +
  CCD26369.1 563 K 563
                 2 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.042
    Mto2_bdg   9 LerqLkaereaRlldrsgarerLeelkaeNrlLkaeLerdrs 50 
                 L++qL+ e+     d s    +L++ k +N +L+  +e + s
  CCD26369.1 622 LVKQLTEEKRNKDNDFSNLLVELNDMKLQNNNLQNIIENLHS 663
                 89******9888888899999**********99988887766 PP

  == domain 3  score: 27.6 bits;  conditional E-value: 2.9e-10
    Mto2_bdg   3 leRLreLerqLkaereaRlldrsgarerLeelkaeNrlLkaeLerdr 49 
                 + R++eLer+  +ere+R+ld + a  r+  l++eN+lL+ +L  +r
  CCD26369.1 782 QLRIEELERKWISERERRKLDANAAESRIRRLEEENQLLREQLYVQR 828
                 57*****************************************8887 PP

>> bZIP_2  Basic region leucine zipper
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   2.1      0.36   3.2e+03      24      39 ..     361     376 ..     348     380 .. 0.77
   2 ?   -0.1   2.1      0.12     1e+03      31      48 ..     542     559 ..     528     564 .. 0.78
   3 ?   -0.8   2.7      0.18   1.6e+03      21      41 ..     556     576 ..     553     586 .. 0.90
   4 ?   -0.6   0.1      0.16   1.4e+03      29      43 ..     604     618 ..     587     629 .. 0.57
   5 ?   -0.1   0.9      0.11     1e+03      32      51 ..     642     661 ..     630     663 .. 0.88
   6 ?   -2.2   2.3      0.52   4.7e+03      23      40 ..     754     771 ..     752     791 .. 0.74
   7 ?   15.1   5.9   2.1e-06     0.018      20      48 ..     796     824 ..     794     826 .. 0.96

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.36
                 HHHHHHHHHHHHHHHH CS
      bZIP_2  24 kakeeeleervkeLee 39 
                 k ke++le+ ++eL++
  CCD26369.1 361 KDKENQLENSNNELTK 376
                 6688888888888876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.12
                 HHHHHHHHHHHHHHHHHH CS
      bZIP_2  31 eervkeLeeeNaqLrqkv 48 
                 e+++++Le+e + L++k+
  CCD26369.1 542 ESQIIQLEKELNLLEKKL 559
                 677788888888887775 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.18
                 HHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  21 ekkkakeeeleervkeLeeeN 41 
                 ekk  +e+ +  ++++L+eeN
  CCD26369.1 556 EKKLNNEKVNNTKLMNLKEEN 576
                 89999999************9 PP

  == domain 4  score: -0.6 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHHHHH CS
      bZIP_2  29 eleervkeLeeeNaq 43 
                 el + +++L+ eN+ 
  CCD26369.1 604 ELSKNIEHLRFENDD 618
                 444455555555555 PP

  == domain 5  score: -0.1 bits;  conditional E-value: 0.11
                 HHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  32 ervkeLeeeNaqLrqkveqL 51 
                  ++++++ +N+ L++ +e+L
  CCD26369.1 642 VELNDMKLQNNNLQNIIENL 661
                 588999***********998 PP

  == domain 6  score: -2.2 bits;  conditional E-value: 0.52
                 HHHHHHHHHHHHHHHHHH CS
      bZIP_2  23 kkakeeeleervkeLeee 40 
                  k++++++ +rv +Le+e
  CCD26369.1 754 EKQEKRSNDKRVSSLESE 771
                 577778888888888766 PP

  == domain 7  score: 15.1 bits;  conditional E-value: 2.1e-06
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_2  20 RekkkakeeeleervkeLeeeNaqLrqkv 48 
                 Re++k+  +  e+r+ +LeeeN+ Lr+++
  CCD26369.1 796 RERRKLDANAAESRIRRLEEENQLLREQL 824
                 9*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (856 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3800  (0.211947); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.33u 0.35s 00:00:01.68 Elapsed: 00:00:00.54
# Mc/sec: 4738.80
//
Query:       CCD26370.1  [L=449]
Description: hypothetical protein NDAI_0H01960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-44  152.2   4.3      1e-44  152.2   4.3    1.7  2  MRG         MRG
    4.9e-06   26.3   0.1    3.1e-05   23.8   0.0    2.4  2  Tudor-knot  RNA binding activity-knot of a chromodomain
  ------ inclusion threshold ------
      0.025   15.1   0.3      0.089   13.3   0.3    1.9  1  Pet100      Pet100


Domain annotation for each model (and alignments):
>> MRG  MRG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.34     2e+03      28      42 ..     115     129 ..     112     160 .. 0.68
   2 !  152.2   4.3   1.7e-48     1e-44      18     194 ..     260     429 ..     239     435 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.34
         MRG  28 LkklLedDwelitkn 42 
                 Lkk+L++D +  +k 
  CCD26370.1 115 LKKKLVNDAREAKKL 129
                 667777766655443 PP

  == domain 2  score: 152.2 bits;  conditional E-value: 1.7e-48
         MRG  18 ikvkleipeeLkklLedDwelitknkklvkLPaklnvkeILedYvkheakkkaetsereaeknvellkevvdgLriyFdftlgkiLLYkfEraqykevl 116
                  +++l+ip +Lk++L+dDwe itk+kk+++LP++ nv++ILedY + + k++ ++  ++    ++ l+e+++gL+ yF+ tl++ LLY+ Er qy+e+l
  CCD26370.1 260 PRITLHIPLKLKSILVDDWECITKEKKIINLPCQNNVSKILEDYEHDMLKSDSSSPASSSIVYQSQLNEFIQGLKLYFNETLSRLLLYRLERLQYEELL 358
                 3557*****************************************9999998885444444788999******************************** PP

         MRG 117 kkaeeekklelessseadqekepseiYGaeHLlRllvkLpellaktsmdekklklLlkhleeflefLaenheeyFses 194
                  ++++++       + +++++++seiYGa HLlRl++ Lpel+++t+md+++++l++k+ e++  ++  + +++Fs++
  CCD26370.1 359 IDYRKKH-------DGNESHMNVSEIYGAMHLLRLISILPELISSTTMDNQSCQLIVKQAENLSIWMVLHIDKLFSSN 429
                 9776654.......467899*******************************************************943 PP

>> Tudor-knot  RNA binding activity-knot of a chromodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   5.2e-09   3.1e-05       4      54 ..       5     106 ..       2     107 .. 0.85
   2 ?   -2.0   0.0      0.56   3.4e+03      21      35 ..     419     436 ..     402     437 .. 0.70

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 5.2e-09
                 TTEEEEEETTSCEEEEEEEEEEETSSC....................................................EEEEEEETTS-CCC-EEEET CS
  Tudor-knot   4 gckvlvrkkdgelrkAeilsirekkgk....................................................yeYYVHYeefNkRlDeWVsa 50 
                 g k+l+++    l++A+il+i   + k                                                    + Y++HY+++   +DeW+s 
  CCD26370.1   5 GGKCLAFH-GPLLYEAKILKIWDPATKtvtsiknssssgkstgsnsndksllqntsatapttgtaptdqesipaeiiafPCYFIHYQGWKSTWDEWISS 102
                 66777777.88889999999988555557788888899999999999999999999999999999999999999999999******************* PP

                 TTEE CS
  Tudor-knot  51 erid 54 
                  ri+
  CCD26370.1 103 IRIR 106
                 9997 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.56
                 EEEEEE...TSSCEEEEE CS
  Tudor-knot  21 ilsire...kkgkyeYYV 35 
                 +l+i +   +++  +YY+
  CCD26370.1 419 VLHIDKlfsSNNDSDYYI 436
                 677777776777799998 PP

>> Pet100  Pet100
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.3   1.5e-05     0.089      15      71 ..      80     136 ..      79     139 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
      Pet100  15 vffPvgvfyyfnqpeyfeefvvktkreffppeekelreeleelkeerlakrekklke 71 
                 ++fP +  +y +    ++e++ +++   ++ e+ el+++l +  +e ++ +++++k+
  CCD26370.1  80 IAFPCYFIHYQGWKSTWDEWISSIRIREYNVENLELKKKLVNDAREAKKLKDQERKK 136
                 79*********************************7777766666655555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1422  (0.0793128); expected 358.6 (0.02)
Passed bias filter:                      419  (0.02337); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3198.63
//
Query:       CCD26371.1  [L=120]
Description: hypothetical protein NDAI_0H01970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-12   46.7   0.0    7.8e-12   45.3   0.0    1.7  1  BolA      BolA-like protein
  ------ inclusion threshold ------
      0.043   13.6   0.3      0.044   13.5   0.3    1.1  1  DUF966    Domain of unknown function (DUF966)
       0.15   12.5   0.0       0.19   12.2   0.0    1.2  1  DUF4140   N-terminal domain of unknown function (DUF4140)


Domain annotation for each model (and alignments):
>> BolA  BolA-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   1.3e-15   7.8e-12       1      72 [.      55     117 ..      55     120 .] 0.90

  Alignments for each domain:
  == domain 1  score: 45.3 bits;  conditional E-value: 1.3e-15
        BolA   1 LtealkpehlevedeShkhaghaeaggetHFkvvivseaFegkslvarhRlvyalLkeelakgiHALslktk 72 
                 L++al+p+++ v+d+S        +g++t F ++++s++F+g++++++h+lv+++Lk+ + +  H L+l+tk
  CCD26371.1  55 LSKALQPKSIRVQDMS--------GGCGTMFAINVTSSQFNGLTTIKQHKLVNEILKDDIPR-WHGLQLQTK 117
                 5678888888888888........578999******************************99.9******98 PP

>> DUF966  Domain of unknown function (DUF966)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.3   7.3e-06     0.044     265     307 ..      19      57 ..       3     108 .. 0.62

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 7.3e-06
      DUF966 265 seaklkassvLmqLisCGsisvkdaeslgliatykaraprfse 307
                 +  ++k s++Lm+L s Gsis       ++ ++ k+ + + s+
  CCD26371.1  19 MMMNTKSSNMLMRLYSSGSISTSM----KMTPEEKMILEKLSK 57 
                 44589***************9744....444444433333333 PP

>> DUF4140  N-terminal domain of unknown function (DUF4140)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   3.2e-05      0.19      23      55 ..      48      82 ..      36     105 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.2e-05
     DUF4140 23 nevtiegLpptldedSlrVe....gagaatildvqve 55
                 ++++e+L+++l+++S+rV+    g    t   ++v+
  CCD26371.1 48 EKMILEKLSKALQPKSIRVQdmsgGC--GTMFAINVT 82
                57899***************854443..455544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       676  (0.0377043); expected 358.6 (0.02)
Passed bias filter:                      418  (0.0233142); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 920.06
//
Query:       CCD26372.1  [L=693]
Description: hypothetical protein NDAI_0H01980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-27   95.3   0.1    8.2e-27   93.0   0.0    2.3  2  EF_assoc_2    EF hand associated
    4.3e-27   93.5   0.4    2.2e-26   91.2   0.8    2.1  2  EF_assoc_1    EF hand associated
    2.4e-25   89.0   0.0    6.7e-12   45.3   0.0    2.6  2  Ras           Ras family
    1.2e-15   57.8   0.0    1.8e-07   31.4   0.0    3.1  2  Roc           Ras of Complex, Roc, domain of DAPkinase
    4.6e-07   30.2   0.5      0.073   13.5   0.0    3.3  3  EF-hand_7     EF-hand domain pair
      5e-07   29.8   0.0      0.012   15.7   0.0    3.0  2  MMR_HSR1      50S ribosome-binding GTPase
    7.4e-07   29.4   0.6      0.037   14.1   0.0    3.0  3  Dynamin_N     Dynamin family
    1.3e-06   27.5  12.0    2.9e-05   23.3   0.5    3.6  3  EF-hand_1     EF hand
    4.9e-06   26.0   9.2    3.9e-05   23.3   0.2    3.6  3  EF-hand_6     EF-hand domain
    2.3e-05   23.9   0.0     0.0016   18.0   0.0    2.5  2  Arf           ADP-ribosylation factor family
    5.8e-05   22.9   1.0      0.017   14.9   0.1    2.8  2  EF-hand_8     EF-hand domain pair
    0.00019   21.4   0.4       0.12   12.2   0.0    3.6  3  RsgA_GTPase   RsgA GTPase
    0.00032   20.0   6.2    0.00073   18.9   1.0    2.9  2  EF-hand_5     EF hand
    0.00042   19.9   0.0        1.2    8.6   0.0    3.2  3  GTP_EFTU      Elongation factor Tu GTP binding domain
     0.0038   16.9   0.1        3.1    7.6   0.1    2.5  2  AAA_29        P-loop containing region of AAA domain
     0.0041   17.5   0.0       0.43   11.0   0.0    2.8  2  RNA_helicase  RNA helicase
     0.0079   15.5   0.0          1    8.6   0.0    2.3  2  Septin        Septin
  ------ inclusion threshold ------
      0.023   14.1   0.0       0.47    9.8   0.0    2.3  2  TniB          Bacterial TniB protein
      0.028   14.9   0.0        3.6    8.1   0.0    2.5  2  ABC_tran      ABC transporter
      0.033   13.9   0.0        2.2    8.0   0.0    2.5  2  AAA_24        AAA domain
      0.049   14.2   0.0       0.19   12.3   0.0    2.1  1  AAA_18        AAA domain
      0.063   13.7   0.0        3.3    8.1   0.0    2.4  2  AAA_16        AAA ATPase domain
      0.069   13.4   0.0        1.8    8.9   0.0    2.8  2  AAA_22        AAA domain
      0.098   12.5   1.1        1.8    8.5   0.1    2.8  2  EF-hand_10    EF hand
        0.1   12.9   0.4         20    5.5   0.0    3.3  3  SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca


Domain annotation for each model (and alignments):
>> EF_assoc_2  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   1.1e-29   8.2e-27      22      87 .]     288     353 ..     257     353 .. 0.86
   2 ?   -1.5   0.0       3.7   2.6e+03      27      42 ..     401     416 ..     393     445 .. 0.64

  Alignments for each domain:
  == domain 1  score: 93.0 bits;  conditional E-value: 1.1e-29
  EF_assoc_2  22 gveeegltlkGFlllnklfiekGrhettWtvLrkFgYddsLsLkeeflhPkldvpedssveLspkG 87 
                  v ++g+tl+GF++lnk ++ekGrhettW +Lr+F+Y+dsL +++++l+Pkl+vpe+ssveLspkG
  CCD26372.1 288 YVPRKGITLNGFIALNKFYAEKGRHETTWGILRAFHYTDSLCINDKILYPKLNVPETSSVELSPKG 353
                 4889************************************************************98 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 3.7
  EF_assoc_2  27 gltlkGFlllnklfie 42 
                  l+ +GF++l+   ++
  CCD26372.1 401 VLNNRGFITLQGWLAQ 416
                 5666777777665555 PP

>> EF_assoc_1  EF hand associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       5.4   3.9e+03      17      25 ..     293     301 ..     290     304 .. 0.85
   2 !   91.2   0.8   3.1e-29   2.2e-26       1      74 [.     391     458 ..     391     459 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 5.4
  EF_assoc_1  17 avtlqGwLa 25 
                  +tl+G++a
  CCD26372.1 293 GITLNGFIA 301
                 69*****98 PP

  == domain 2  score: 91.2 bits;  conditional E-value: 3.1e-29
  EF_assoc_1   1 WaeaefpsstvtneegavtlqGwLaqWsltTlldvkttleyLaYlGypssslseeettsAlkvtrprkldrkkk 74 
                 W+ ++fpsstv n++g +tlqGwLaqWs+tT+ld+k t++yL+Y+Gy+      e+ ++ l++t+prk +r+k+
  CCD26372.1 391 WTTTDFPSSTVLNNRGFITLQGWLAQWSMTTFLDYKITTAYLVYFGYE------EDVKQVLHITKPRKFRRRKG 458
                 9**********************************************7......246789************98 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0     2e-13   1.4e-10       1     160 [.       7     204 ..       7     206 .. 0.80
   2 !   45.3   0.0   9.3e-15   6.7e-12       3     134 ..     474     604 ..     472     632 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.0 bits;  conditional E-value: 2e-13
                 EEEEEESTTSSHHHHHHHHHHSSCS...SSCTTTSSEEEEEEEEEET.TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHH.HHH CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFk...eeyesTigvdfytkeievd.gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenvk.kwv 94 
                 ++v+ Gd++vGK+sl+++ +kd+F    ++ ++Ti   +  ++++++  +  +  i DT   +  +   ++ +++a++i lvy   ++es+e+++ +w+
  CCD26372.1   7 RIVICGDKGVGKSSLIVSLAKDQFLpnlQDVIPTI---SIPRDFSASpYSPQNTIIIDTNDSDTIT--LQSQLKSADVIWLVY--CDHESYERISlHWM 98 
                 58**********************82224556666...5555555443444556689998776554..3567899********..69********6666 PP

                 HHHHHHSTTTSEEEEEEETTTGGG.......................................G-SS-HHHHHHHHHHHT..SEEEEEBTTTTCTHHHH CS
         Ras  95 eeikrvaeenvpivLvGnKvDlee.......................................kravsteegeelakelg..lkfletSAktnenveea 152
                   + r    n+p+vL+ nK+D                                          + +v+ ee   +  e++   + ++tSAk++ nv++a
  CCD26372.1  99 MMF-RSLGLNIPVVLCKNKCDQFAlsflpssssdassssdaassatlihnatdndnvssasskDTKVEDEEFIPILMEFKeiDTCIKTSAKHQFNVNHA 196
                 655.555658***********9999****************************8888888887777877777776666665346799************ PP

                 HHHHHHHH CS
         Ras 153 feellrei 160
                 f+ + r+i
  CCD26372.1 197 FYLCQRSI 204
                 *9998887 PP

  == domain 2  score: 45.3 bits;  conditional E-value: 9.3e-15
                 EEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHH.HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH CS
         Ras   3 vlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievdgkevkleiwDTAGqeefkslre.lyyrdaegillvyditsresfenvkkwveeikrv 100
                  ++G+s+ GK+sll +f   +F ++y +Ti     ++++e++g +    i+   Gq++   l++   ++++++i l+yd ++ esf+++ ++++  k+ 
  CCD26372.1 474 FVIGKSNGGKSSLLESFLGRTFMDSYSPTIRPKIAVNSLELKGGKQYYLILQEFGQQQPAILENkEKLKNCDVICLTYDSSDPESFSSLVDILNTYKHL 572
                 69****************************************888888899999*****9997616799******************999988877655 PP

                 STTTSEEEEEEETTTGGGG-SS-HHHHHHHHHHH CS
         Ras 101 aeenvpivLvGnKvDleekravsteegeelakel 134
                    n+p+v v+ K+Dl+++++    +  +l ++l
  CCD26372.1 573 Q--NIPLVFVALKADLDKQQQRCDIQPDTLTDSL 604
                 4..59************98775555555555555 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   2.6e-10   1.8e-07       1     120 []       7     119 ..       7     119 .. 0.78
   2 !   22.8   0.0   1.2e-07   8.4e-05       3     119 ..     474     585 ..     472     586 .. 0.83

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 2.6e-10
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEE.EGHHHHCHH.H CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvy.dsrssenlk.e 97 
                 ++v++Gd+gvGK+sl+ ++ +d+f ++ +  i    + ++++  + ++ +      +  i Dt   + +  + ++ l++a+++ lvy d +s+e+++ +
  CCD26372.1   7 RIVICGDKGVGKSSLIVSLAKDQFLPNLQDVIPTISIPRDFS-ASPYSPQ------NTIIIDTNDSDTI--TLQSQLKSADVIWLVYcDHESYERISlH 96 
                 69***********************99998887777777774.3333222......3457799766655..5567778888888877368888887548 PP

                 HHHHHHHHCSSS-EEEEEE-TTT CS
         Roc  98 WlkelkkvagkspvilvgnkiDl 120
                 W+  +++ + ++pv+l+ nk+D+
  CCD26372.1  97 WMMMFRSLGLNIPVVLCKNKCDQ 119
                 *********************95 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.2e-07
                 EEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHHHH CS
         Roc   3 vlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWlke 101
                  ++G+s+ GK+sll++f+ ++f +++++ti  +++ +++ ++kg       k++ l +  ++ q+     ++  l++ ++++l yds++ e++++ ++ 
  CCD26372.1 474 FVIGKSNGGKSSLLESFLGRTFMDSYSPTIRPKIAVNSL-ELKG------GKQYYLILQEFGQQQPAILENKEKLKNCDVICLTYDSSDPESFSSLVDI 565
                 589****************************99998876.5665......467888888888888777788999************8887777777666 PP

                 HHHH..CSSS-EEEEEE-TT CS
         Roc 102 lkkv..agkspvilvgnkiD 119
                 l+++   +++p+++v+ k+D
  CCD26372.1 566 LNTYkhLQNIPLVFVALKAD 585
                 665511679999***99999 PP

>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       7.9   5.7e+03      53      63 ..      60      70 ..      59     107 .. 0.80
   2 !   13.5   0.0    0.0001     0.073       3      30 ..     226     253 ..     190     286 .. 0.81
   3 !   13.0   0.0   0.00015      0.11      48      70 ..     359     381 ..     321     384 .. 0.74

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 7.9
   EF-hand_7 53 fDtdkdGvisf 63
                +Dt+++++i++
  CCD26372.1 60 IDTNDSDTITL 70
                56666666665 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 0.0001
   EF-hand_7   3 klkeaFkelDtdgdgyldkeellrllrk 30 
                 +l+++F + D+d+d++l+ +e+l l rk
  CCD26372.1 226 ALERIFILSDKDQDNFLNDSEFLALQRK 253
                 6788888889999999999998856555 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 0.00015
   EF-hand_7  48 llfkefDtdkdGvisfdEFlkly 70 
                 +lf+ fD+++dG ++ +E+ +l+
  CCD26372.1 359 ELFRRFDKNNDGGLDENELIQLF 381
                 55555555555555555555554 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00051      0.37       1      23 [.       7      29 ..       7     116 .. 0.69
   2 !   15.7   0.0   1.6e-05     0.012       2     111 ..     473     580 ..     472     583 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00051
                EEEEEESTTSSHHHHHHHHHTST CS
    MMR_HSR1  1 evaivGrpNvGKStLinaltgek 23
                +++i G   vGKS+Li +l +++
  CCD26372.1  7 RIVICGDKGVGKSSLIVSLAKDQ 29
                699****************9873 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 1.6e-05
                 EEEEESTTSSHHHHHHHHHTSTEEESSSTTSSSSEEEEEEEETT.EEEEEEECGGCSS.HHHHHHHHHHHHHHHHCTSEEEEEEETT.TTCSHHHHHHH CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaivsdkpgtTrdinegrvklkg.keielvDtpGlie.gaseekglgkaflaleeadlillvvdas.eeklkpldeel 97 
                 + ++G++N GKS+L+ + +g++   s  p    +i    ++lkg k+++l+    l e g+++   l+++ + l+++d+i+l  d+s  e+++ l   l
  CCD26372.1 473 CFVIGKSNGGKSSLLESFLGRTFMDSYSPTIRPKIAVNSLELKGgKQYYLI----LQEfGQQQPAILENKEK-LKNCDVICLTYDSSdPESFSSLVDIL 566
                 679*****************9776666665555555555555555777776....22234455555555555.78899999999977633455554444 PP

                 HHHHHHTTSEEEEE CS
    MMR_HSR1  98 eelleeakkplilv 111
                 + +++ +++pl++v
  CCD26372.1 567 NTYKHLQNIPLVFV 580
                 44443366666665 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   0.00019      0.14       1      26 [.       8      33 ..       8      43 .. 0.91
   2 ?   -1.8   0.0       3.9   2.8e+03     112     143 ..      60      90 ..      59     114 .. 0.67
   3 !   14.1   0.0   5.1e-05     0.037       3      25 ..     475     497 ..     473     562 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00019
                EEEEEBTTTTHHHHHHHHHTS--S-- CS
   Dynamin_N  1 iavvGsqSsGKSSvlnaLlgedilpr 26
                i+++G+   GKSS++ +L ++++lp+
  CCD26372.1  8 IVICGDKGVGKSSLIVSLAKDQFLPN 33
                89***********************6 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.9
                 -SSSGTTSHHHHHHHSTTEEEEEEEETTS-CC CS
   Dynamin_N 112 dsvnkrdqelvkeyikkadiilavtsanhdls 143
                 +++n+ d+  +++++k+ad+i +v +++h+  
  CCD26372.1  60 IDTNDSDTITLQSQLKSADVIWLV-YCDHESY 90 
                 567888888899999999988655.5555544 PP

  == domain 3  score: 14.1 bits;  conditional E-value: 5.1e-05
                 EEEBTTTTHHHHHHHHHTS--S- CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedilp 25 
                 v+G+ + GKSS+l++ lg+ ++ 
  CCD26372.1 475 VIGKSNGGKSSLLESFLGRTFMD 497
                 9******************9864 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       4.3   3.1e+03      13      27 ..     160     174 ..     159     176 .. 0.82
   2 !   11.2   0.2   0.00029      0.21       2      25 ..     227     250 ..     226     254 .. 0.89
   3 !   23.3   0.5   4.1e-08   2.9e-05       3      27 ..     358     382 ..     356     384 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 4.3
                 SSSEEEHHHHHHHHH CS
   EF-hand_1  13 gdGkIdfeEfkellk 27 
                 +d k++ eEf+ +l+
  CCD26372.1 160 KDTKVEDEEFIPILM 174
                 7889999***97776 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00029
                 HHHHHHHHTTTSSSEEEHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkel 25 
                 l++iF + DkD+d +++ +Ef++l
  CCD26372.1 227 LERIFILSDKDQDNFLNDSEFLAL 250
                 7899*****************987 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 4.1e-08
                 HHHHHHHTTTSSSEEEHHHHHHHHH CS
   EF-hand_1   3 keiFrefDkDgdGkIdfeEfkellk 27 
                  e+Fr fDk++dG +d +E+++l+k
  CCD26372.1 358 VELFRRFDKNNDGGLDENELIQLFK 382
                 699*******************998 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.2       3.5   2.5e+03       9      19 ..      60      70 ..      59      71 .. 0.87
   2 ?    6.4   0.6     0.014       9.9       2      27 ..     227     252 ..     226     263 .. 0.87
   3 !   23.3   0.2   5.4e-08   3.9e-05       2      27 ..     357     382 ..     356     387 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 3.5
   EF-hand_6  9 fDkdgdGkida 19
                +D++++ +i+ 
  CCD26372.1 60 IDTNDSDTITL 70
                8********96 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.014
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l+++F l Dkd d++++ +E+ ++ r
  CCD26372.1 227 LERIFILSDKDQDNFLNDSEFLALQR 252
                 67899999*************99876 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 5.4e-08
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalr 27 
                 l e+F+ fDk++dG +d +El+++++
  CCD26372.1 357 LVELFRRFDKNNDGGLDENELIQLFK 382
                 689********************997 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.074        53      12      46 ..       3      41 ..       1      45 [. 0.78
   2 !   18.0   0.0   2.2e-06    0.0016      12     155 ..     468     614 ..     459     628 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.074
                TTEEEEEEEESTTSSHHHHHHHHHHSSCEE....CSSSS CS
         Arf 12 kkelrilllGLDnaGKtTilkklkleelvt....tvPTi 46
                k  +ri++ G  + GK+ ++  l ++++      ++PTi
  CCD26372.1  3 KETIRIVICGDKGVGKSSLIVSLAKDQFLPnlqdVIPTI 41
                5679********************998643222277776 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 2.2e-06
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEE..EEEEEE...TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHHHHHHHH CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvt.tvPTigfn..veelei...knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRleeakeeL 104
                 +k + + ++G  n GK+ +l+ +    +++  +PTi ++  v++le    k++ + + + G q+ +    k+ +++ d++    Ds+d e +++  + L
  CCD26372.1 468 RKVFNCFVIGKSNGGKSSLLESFLGRTFMDsYSPTIRPKiaVNSLELkggKQYYLILQEFGQQQPAILENKEKLKNCDVICLTYDSSDPESFSSLVDIL 566
                 677899****************99988776478999876224566665567788999999*99999999*******************99887654433 PP

                 HHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEE CS
         Arf 105 kalleeeelkevallvlaNKqDlpealseeelrellgleelkgkrkleiqk 155
                     + ++l++++l+ +a K Dl ++ ++ +++     ++l  +++l+i +
  CCD26372.1 567 ---NTYKHLQNIPLVFVALKADLDKQQQRCDIQPDTLTDSLFLNHPLHISS 614
                 ...35689*****************99999999887777777777777765 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.019        13      22      54 ..     221     253 ..     213     254 .. 0.83
   2 !   14.9   0.1   2.4e-05     0.017      30      53 ..     359     382 ..     357     384 .. 0.92

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.019
   EF-hand_8  22 glseeevdilfrefDtdgdGkisfeEFcvller 54 
                  l+ ++++ +f + D d+d+ ++  EF++l  +
  CCD26372.1 221 PLTVNALERIFILSDKDQDNFLNDSEFLALQRK 253
                 588889999999****************99765 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 2.4e-05
   EF-hand_8  30 ilfrefDtdgdGkisfeEFcvlle 53 
                 +lfr+fD ++dG ++ +E ++l++
  CCD26372.1 359 ELFRRFDKNNDGGLDENELIQLFK 382
                 79*******************997 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00017      0.12     102     122 ..       8      28 ..       2      41 .. 0.87
   2 ?    3.3   0.0     0.097        69     103     122 ..     474     493 ..     466     518 .. 0.87
   3 ?    1.3   0.0      0.41   2.9e+02      12      65 ..     540     593 ..     526     616 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00017
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  +v++G  GvGKS+Li +l+ +
   CCD26372.1   8 IVICGDKGVGKSSLIVSLAKD 28 
                  699************999876 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.097
                  EEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 103 vlvGqSGvGKStLinallpe 122
                  +++G+S  GKS+L++++l++
   CCD26372.1 474 FVIGKSNGGKSSLLESFLGR 493
                  679***********998876 PP

  == domain 3  score: 1.3 bits;  conditional E-value: 0.41
                  TEES--EEEEEEESTTTT--HHHHHHHHHHHHHTT-EEEEEEE-GGG--HHHHH CS
  RsgA_GTPase  12 kvaNvdqllivvslkepelslnlldrfLvlaeekgiepvivlnKiDlleeeeel 65 
                  k  N+d +++    ++pe  ++l+d + +  + ++i++v v  K+Dl ++++++
   CCD26372.1 540 KLKNCDVICLTYDSSDPESFSSLVDILNTYKHLQNIPLVFVALKADLDKQQQRC 593
                  4678888888888888888888888777777889999999999****9999844 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.4      0.13        94       9      23 ..     235     249 ..     227     251 .. 0.83
   2 !   18.9   1.0     1e-06   0.00073       1      24 [.     357     380 ..     357     382 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.13
                 -SS-SSCE-HHHHHH CS
   EF-hand_5   9 DlNgDGkIskeELkt 23 
                 D+++D +++ +E+ +
  CCD26372.1 235 DKDQDNFLNDSEFLA 249
                 ************976 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 1e-06
                 HHHHHHHH-SS-SSCE-HHHHHHH CS
   EF-hand_5   1 lkdtFqaiDlNgDGkIskeELktl 24 
                 l+++F+++D+N+DG ++  EL +l
  CCD26372.1 357 LVELFRRFDKNNDGGLDENELIQL 380
                 6789*****************874 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       0.3   2.1e+02       2      25 ..       4      27 ..       3      30 .. 0.86
   2 !    8.6   0.0    0.0017       1.2      91     183 ..      74     195 ..      63     273 .. 0.66
   3 ?    5.8   0.0     0.012       8.6       2      27 ..     469     494 ..     468     506 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.3
                CEEEEEEEESTTSSHHHHHHHHHH CS
    GTP_EFTU  2 rirnigiighvDhGKtTLtdrLly 25
                +++ i+i+g+   GK++L+ +L +
  CCD26372.1  4 ETIRIVICGDKGVGKSSLIVSLAK 27
                67899*************988865 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0017
                 HHT-SEEEEEEETTTBSTHHHHHHHHHHHHTTTE..EEEEEESCGST........HHHHHHHHHHHHHHHHHH..................HHHHHHHH CS
    GTP_EFTU  91 lrvlDgavlvvdaveGvepqteevlrlalkegvp..iivfiNKmDrl........kaelkeiveevkqklsrk..................eeklekyg 161
                 l+ +D+  lv + +e  e  +   + + +++g++  ++++ NK+D+                 ++++++ +                            
  CCD26372.1  74 LKSADVIWLVYCDHESYERISLHWMMMFRSLGLNipVVLCKNKCDQFalsflpssS-------SDASSSSD-AassatlihnatdndnvssA------- 157
                 56667666666666666666666666666555544499999******644444331.......33333322.12444444455554444431....... PP

                 HTTT...................TTEEEEEEBTTTTBTHHH CS
    GTP_EFTU 162 ekge...................kevpvvfgSalkgegvkt 183
                    +                   ++ +++ +Sa+++++v++
  CCD26372.1 158 ---SskdtkvedeefipilmefkEIDTCIKTSAKHQFNVNH 195
                 ...02333444455677777776677788889999888873 PP

  == domain 3  score: 5.8 bits;  conditional E-value: 0.012
                 CEEEEEEEESTTSSHHHHHHHHHHHT CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlykt 27 
                 ++ n+ +ig  + GK++L+++ l +t
  CCD26372.1 469 KVFNCFVIGKSNGGKSSLLESFLGRT 494
                 678*****************998766 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0044       3.1      25      39 ..       8      22 ..       1      26 [. 0.84
   2 !    6.6   0.0    0.0091       6.5      24      40 ..     472     488 ..     459     491 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0044
      AAA_29 25 tlltGpsGsGKSTll 39
                +++ G+ G+GKS+l+
  CCD26372.1  8 IVICGDKGVGKSSLI 22
                6899*********98 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0091
      AAA_29  24 atlltGpsGsGKSTllD 40 
                 +++++G+s  GKS+ll 
  CCD26372.1 472 NCFVIGKSNGGKSSLLE 488
                 789************96 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0006      0.43       1      56 [.       8      61 ..       8      95 .. 0.69
   2 ?    3.4   0.0      0.14        99       2      26 ..     474     499 ..     473     557 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0006
  RNA_helicase  1 iwlyGpsgeGKStlakeLakallkklklkkkdsvys.rnpeddfw.dgYtgqevvvid 56
                  i+++G++g+GKS+l+ +Lak+      l++ ++v+   +   df  + Y+ q+ ++id
    CCD26372.1  8 IVICGDKGVGKSSLIVSLAKDQF----LPNLQDVIPtISIPRDFSaSPYSPQNTIIID 61
                  79***************999865....2333333332333344433666666666665 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
  RNA_helicase   2 wlyGpsgeGKStlake.Lakallkkl 26 
                   ++ G+s+ GKS+l ++ L +++++++
    CCD26372.1 474 FVIGKSNGGKSSLLESfLGRTFMDSY 499
                   789**********9995666666655 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0014         1       5      31 ..       6      32 ..       3      65 .. 0.86
   2 ?    4.5   0.0     0.025        18       5      32 ..     471     498 ..     468     548 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0014
                EEEEEEEBTTSSCCCCCCTTSSSS--- CS
      Septin  5 ftlmvvGesglGkttlintlfetdlie 31
                + ++++G++g+Gk++li +l +++  +
  CCD26372.1  6 IRIVICGDKGVGKSSLIVSLAKDQFLP 32
                7899****************9988765 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.025
                 EEEEEEEBTTSSCCCCCCTTSSSS---- CS
      Septin   5 ftlmvvGesglGkttlintlfetdliee 32 
                 f+ +v+G+s  Gk++l+++++ ++ +++
  CCD26372.1 471 FNCFVIGKSNGGKSSLLESFLGRTFMDS 498
                 899*****************99888776 PP

>> TniB  Bacterial TniB protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.22   1.6e+02      37      59 ..       7      29 ..       2      40 .. 0.83
   2 ?    9.8   0.0   0.00065      0.47      33      61 ..     468     496 ..     455     550 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.22
        TniB 37 nlllvGdsnnGKtmivekFarlh 59
                 ++++Gd  +GK++++ + a+++
  CCD26372.1  7 RIVICGDKGVGKSSLIVSLAKDQ 29
                5789***********98887765 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.00065
        TniB  33 krmpnlllvGdsnnGKtmivekFarlhpp 61 
                  ++ n+ ++G+sn GK++++e+F  +   
  CCD26372.1 468 RKVFNCFVIGKSNGGKSSLLESFLGRTFM 496
                 34589******************966543 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0     0.005       3.6      13      33 ..       7      27 ..       2      34 .. 0.87
   2 ?    4.2   0.0     0.082        59      16      37 ..     475     496 ..     471     592 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.005
                EEEEEESTTSSHHHHHHHHTT CS
                xxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran 13 kvaivGenGaGKStLlkllag 33
                +++i G+ G GKS+L+  la+
  CCD26372.1  7 RIVICGDKGVGKSSLIVSLAK 27
                789*************98876 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.082
                 EEESTTSSHHHHHHHHTTSS-- CS
                 xxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  16 ivGenGaGKStLlkllagllkp 37 
                 ++G++  GKS+Ll+ ++g +  
  CCD26372.1 475 VIGKSNGGKSSLLESFLGRTFM 496
                 79*************9998655 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0     0.003       2.2       3      23 ..       6      27 ..       4      69 .. 0.81
   2 ?    3.1   0.0     0.096        69       4      27 ..     472     495 ..     470     501 .. 0.88

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.003
      AAA_24  3 lkiliyGpsgiGKTtlakel.g 23
                ++i+i G+ g+GK++l+ +l +
  CCD26372.1  6 IRIVICGDKGVGKSSLIVSLaK 27
                79**************998842 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.096
      AAA_24   4 kiliyGpsgiGKTtlakelgpkpl 27 
                 +++++G+s  GK++l+ ++  +++
  CCD26372.1 472 NCFVIGKSNGGKSSLLESFLGRTF 495
                 5789**************977776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00027      0.19       1      34 [.       8      40 ..       8      96 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00027
      AAA_18  1 IlltGtpGvGKttlakeLskrlgfgvnlrdvake 34
                I+++G  GvGK++l   L+k  +f  nl+dv++ 
  CCD26372.1  8 IVICGDKGVGKSSLIVSLAKD-QFLPNLQDVIPT 40
                99****************998.576666666655 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0046       3.3      27      46 ..       8      27 ..       2      59 .. 0.85
   2 ?    2.8   0.0      0.18   1.3e+02      26      45 ..     472     491 ..     460     534 .. 0.87

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0046
      AAA_16 27 vllsGesGvGKsslvrellr 46
                +++ G++GvGKssl+ +l++
  CCD26372.1  8 IVICGDKGVGKSSLIVSLAK 27
                6799**********977765 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.18
      AAA_16  26 lvllsGesGvGKsslvrell 45 
                 +++++G s  GKssl++++l
  CCD26372.1 472 NCFVIGKSNGGKSSLLESFL 491
                 789*************9997 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0025       1.8       8      27 ..       8      27 ..       4     104 .. 0.90
   2 ?    1.1   0.1      0.62   4.4e+02       9      29 ..     474     494 ..     472     589 .. 0.67

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0025
      AAA_22  8 lvvtGesGtGKTtllrrlle 27
                +v++G +G+GK+ l+  l++
  CCD26372.1  8 IVICGDKGVGKSSLIVSLAK 27
                79***********9988775 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.62
      AAA_22   9 vvtGesGtGKTtllrrlleql 29 
                 +v+G s  GK+ ll+ +l + 
  CCD26372.1 474 FVIGKSNGGKSSLLESFLGRT 494
                 678888888888888776554 PP

>> EF-hand_10  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.38   2.7e+02      25      43 ..     229     247 ..     227     253 .. 0.88
   2 ?    8.5   0.1    0.0025       1.8      25      45 ..     359     379 ..     355     383 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.38
  EF-hand_10  25 kLFkkcDkSksgrLegeEi 43 
                  +F   Dk ++++L+++E+
  CCD26372.1 229 RIFILSDKDQDNFLNDSEF 247
                 688999************8 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0025
  EF-hand_10  25 kLFkkcDkSksgrLegeEiee 45 
                 +LF++ Dk ++g L+++E+ +
  CCD26372.1 359 ELFRRFDKNNDGGLDENELIQ 379
                 79****************755 PP

>> SPARC_Ca_bdg  Secreted protein acidic and rich in cysteine Ca binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.92   6.6e+02      67      92 ..     160     185 ..     130     190 .. 0.81
   2 ?    2.2   0.1      0.31   2.3e+02      53      99 ..     224     264 ..     201     274 .. 0.79
   3 ?    5.5   0.0     0.028        20      60      80 ..     361     381 ..     343     414 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.92
  SPARC_Ca_bdg  67 sdkvlsksELaplraplvklehCikp 92 
                   +d  ++ +E  p+ +++ ++++Cik+
    CCD26372.1 160 KDTKVEDEEFIPILMEFKEIDTCIKT 185
                   67788888888888888888888875 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.31
  SPARC_Ca_bdg  53 kepvawkFsklDtnsdkvlsksELaplraplvklehCikpflescDa 99 
                   +++++  F   D+++d++l+ sE  +l+       +C ++ l+s D 
    CCD26372.1 224 VNALERIFILSDKDQDNFLNDSEFLALQR------KCFNKVLDSNDF 264
                   55666667778999*********999998......677777777765 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.028
  SPARC_Ca_bdg  60 FsklDtnsdkvlsksELaplr 80 
                   F ++D+n+d+ l+++EL +l 
    CCD26372.1 361 FRRFDKNNDGGLDENELIQLF 381
                   99***************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.68u 0.25s 00:00:00.93 Elapsed: 00:00:00.42
# Mc/sec: 5006.84
//
Query:       CCD26373.1  [L=1161]
Description: hypothetical protein NDAI_0H01990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-09   37.7  10.6    3.5e-09   36.6  10.6    1.6  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6  10.6   1.9e-13   3.5e-09       2      37 ..      68     102 ..      67     105 .. 0.93

  Alignments for each domain:
  == domain 1  score: 36.6 bits;  conditional E-value: 1.9e-13
                 S-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCC CS
     Zn_clus   2 aCdnCrkkKvKCdakkPaCsnCkklnleCtfysess 37 
                 +C++Crk K+KCd++kP C++C+k n +C  y+   
  CCD26373.1  68 VCQECRKAKTKCDKEKPYCTRCVKQNIKCI-YDVAE 102
                 7*****************************.98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1161 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1334  (0.0744046); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.78u 0.29s 00:00:01.07 Elapsed: 00:00:00.45
# Mc/sec: 7685.89
//
Query:       CCD26374.1  [L=880]
Description: hypothetical protein NDAI_0H02000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     8e-155  515.7  36.4     8e-155  515.7  36.4    1.6  2  TRP          Transient receptor potential (TRP) ion channel
    4.2e-41  140.6   1.7    8.6e-41  139.6   1.7    1.6  1  TRP_N        ML-like domain
  ------ inclusion threshold ------
       0.23   11.0  20.3       0.46   10.1  20.3    1.4  1  SR-25        Nuclear RNA-splicing-associated protein
        3.1    8.4   5.7       0.51   10.9   0.6    2.2  2  STAT_bind    STAT protein, DNA binding domain
        7.9    4.9  18.6       0.12   10.9   4.3    2.1  2  Macoilin     Macoilin family


Domain annotation for each model (and alignments):
>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   1.8       1.5   5.5e+03     101     115 ..      55      71 ..      23     112 .. 0.47
   2 !  515.7  36.4  2.2e-158    8e-155       2     426 .]     239     696 ..     238     696 .. 0.95

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 1.5
         TRP 101 sssstssvsvkral..k 115
                 +s ++ss s + +   +
  CCD26374.1  55 TSATSSSSSSSSSSstS 71 
                 11111111111111111 PP

  == domain 2  score: 515.7 bits;  conditional E-value: 2.2e-158
         TRP   2 kwvtaviaglallasnasavastlgnsnaaahvaasvlslflyfQsvafigmlsv.nyPpvlaawtqnfaWsmglirvsfmqkiinwyvqstgGtatlv 99 
                 +w +a+i+g++ll+   s ++s++g+s+++ah+a++++slf+yfQ++a+++m++v ++Pp++aawtqnf+Wsmg+i+ +fmqki+nwy+q+t+G +t+v
  CCD26374.1 239 SWPIAAISGVGLLT---SGFVSVIGYSSTSAHIASNSISLFVYFQNLAITAMMGVsRVPPIAAAWTQNFQWSMGIINAEFMQKIFNWYIQATKGISTVV 334
                 7*************...********************************************************************************** PP

         TRP 100 lsssstssvsv....kral.............................krges.kslpessskl.v.rGikrvaekagiestnafmtgllffliliall 162
                 +s++++ s+sv    kr+l                             +  ++ ++++e ss + v rGi+rva+ka+ie +n+f+tg++ffl++++++
  CCD26374.1 335 VSNKDILSISVqkkrKRDLiqlfkratytvvssndynfdsilddsklyT--TDeRNTDEYSSRIlVlRGIQRVAFKANIELSNFFLTGIVFFLFFLFCM 431
                 ***********66552444666666669999999*********986441..4434666666777688******************************** PP

         TRP 163 vvlvllfKlllellarkklike.drlkefrknwlgilkgallrlilifffqllvlclfeftqrdsaavvvlAvillalflgvllffafrvlitarkskr 260
                 ++++++fK+l+e+l+r +l+ e ++++++rknw +i+kg+l+rl++i+f+q+++l+++eftq ds+av+v Av+++++++++l++ ++rv+i +r+s r
  CCD26374.1 432 ILALIFFKALIEVLTRARLMAEtSNFFQYRKNWASIIKGTLFRLAIIAFPQVSLLTIWEFTQVDSPAVIVDAVFIFIIITALLIYGTVRVFIKGRESLR 530
                 ********************9779999************************************************************************ PP

         TRP 261 lhknpaylLysdkkvlnkyGflyeqyrasrywffvpllvylfvkalfialaqgsGkvQvialliiEllylvlliwlrPyedkrtnvlniiisvvkvlnv 359
                 l+kn+aylLysd ++ln+yGfly+q+ra+++w+++p+l+y f+++lf+a++q++Gk+Q++++++iEl+++v+l+w+rPy dkrtn++ni+i++v+++n+
  CCD26374.1 531 LYKNAAYLLYSDSNFLNRYGFLYVQFRADAFWWLLPMLSYSFLRSLFVAVLQEQGKAQAMVIFVIELIFFVCLCWIRPYLDKRTNIFNIAIHLVNLINS 629
                 *************************************************************************************************** PP

         TRP 360 illlaFseefglseivktvvGvvlivinavlalvlliliivnaiiallsknpdrryrpakddresfl 426
                 i++l+Fs+ f+++ iv++v++v+l+v+na++al+ll+++i+++++al+++npd ry+p+kddr+sf+
  CCD26374.1 630 IFFLFFSNLFKQPPIVSSVMAVILFVLNAAFALFLLCFTIITCTLALVHRNPDVRYQPMKDDRVSFI 696
                 ****************************************************************996 PP

>> TRP_N  ML-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6   1.7   2.4e-44   8.6e-41       1     139 []      94     233 ..      94     233 .. 0.96

  Alignments for each domain:
  == domain 1  score: 139.6 bits;  conditional E-value: 2.4e-44
       TRP_N   1 lvtssfenClensqftaskfdvtftpdnktvvfnvtgtssienkavtlelkveaygyevvnetvdpCdanvkglCPlgpgfkinasgvlkvseevvsei 99 
                 l+t s+ +C++ns ftas+fd++++p+nkt  fn+++t++i+++ +++++++ +yg +v+++++d+C+ n  +lCPl++g +i++s++++ +++++++i
  CCD26374.1  94 LRTDSLLTCMDNSGFTASFFDISYYPHNKTAIFNIDATTTINEN-IIVKVELLVYGLKVIDRSFDLCSLNEVSLCPLSAG-RIDVSSSYQLDDSIAKQI 190
                 57899***************************************.***********************************.********99******** PP

       TRP_N 100 psiaYsipdldatvrvriys...tgeateiaCvsatitngktv 139
                 p+iaY+ipdlda+vrv  ys   t+  t+iaCv+a ++n+ktv
  CCD26374.1 191 PAIAYTIPDLDAQVRVVAYSqndTSFTTPIACVQAIVSNDKTV 233
                 ****************999976545889**************7 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  20.3   0.00013      0.46      50      90 ..      46      86 ..      31      97 .. 0.46

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 0.00013
       SR-25 50 erskekkkkkrrrssssssssssssssssssssssssddrk 90
                + +++ +  ++ +sssssssssss+sssss+s+ssss ++k
  CCD26374.1 46 DTNTNTAITTSATSSSSSSSSSSSTSSSSSASASSSSTSQK 86
                33333333333333344444444444444444444433333 PP

>> STAT_bind  STAT protein, DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.5      0.95   3.4e+03      40      56 ..      57      72 ..      24      98 .. 0.44
   2 ?   10.9   0.6   0.00014      0.51      24     104 ..     673     753 ..     668     756 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.95
                EHHHHHHHHT.T---TT CS
   STAT_bind 40 sekqarelsqtksirkf 56
                + ++  + s ++s++++
  CCD26374.1 57 ATSSSSSSS-SSSSTSS 72
                111111111.1111111 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00014
                 TTT-TTS--BEEEEEEEHHHHHHHHT.T---TT--TT--BS---B-EEETTTTEEE-EEEEE-B-------------GGG- CS
   STAT_bind  24 kLnikelnpevkvkiisekqarelsqtksirkfkilGeisnekkaleeeeqsgalsaefrnlsLkeikrgekkgsesVtee 104
                 +L + + np+v+ + + ++ +  +++++++ +++ ++++sn++++++++  +++ +ae+ +l    ++++e+++++++ + 
  CCD26374.1 673 TLALVHRNPDVRYQPMKDDRVSFIPKITNNNNNDGTTDSSNNSNIMMTNYDKNKSEAELFELRQAVMDTNETEQEKMIRDD 753
                 6777789**************************************************998888777777777777776665 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   4.3   3.5e-05      0.12     319     371 ..      37      90 ..      21     151 .. 0.65
   2 ?   -0.2   6.3     0.078   2.8e+02     231     357 ..     697     823 ..     676     860 .. 0.53

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 3.5e-05
    Macoilin 319 kssssssssnknskkasagsagssnssskkhs.essksvtsssssknskkqklp 371
                 +++++ +++  n+++a ++sa+ss+sss + s +ss+s +s+sss+ s+k ++p
  CCD26374.1  37 GTTATDTDTDTNTNTAITTSATSSSSSSSSSSsTSSSSSASASSSSTSQKVSTP 90 
                 444455555555555555555444444444430333444444455555555554 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.078
    Macoilin 231 pvalsknnhslnkkdsslklpeleyrekkksakssrsdskkkhehnesvdsklqekeymenkskskrlsksessgsesellveesvkskssssssssnk 329
                 p+++++nn++ +  +s+++   +++ +k+ks+++  +  +   + ne+ ++k+ + +  +nk   ++  +s+    +++ l +e +++ +sss s++n+
  CCD26374.1 697 PKITNNNNNDGTTDSSNNSNIMMTNYDKNKSEAELFELRQAVMDTNETEQEKMIRDDTFHNKGGFANAGESSRILFNNDDLDDEAISNYTSSSLSRNNP 795
                 445555555544443333333334444444444443333333344455555555666666666666666665555555666666666666666666555 PP

    Macoilin 330 nskkasagsagssnssskkhsessksvt 357
                  + +++ +s+ + +s+  + ++  +s++
  CCD26374.1 796 YTTTNNEDSIVQPTSAVMGSNNLMNSPS 823
                 5555555444444444443333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (880 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1876  (0.104635); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                       105  (0.00585643); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.97u 0.27s 00:00:01.24 Elapsed: 00:00:00.44
# Mc/sec: 6018.06
//
Query:       CCD26375.1  [L=724]
Description: hypothetical protein NDAI_0H02010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-90  301.5   0.0    9.6e-90  301.2   0.0    1.1  1  AMP-binding    AMP-binding enzyme
    3.2e-24   85.7   0.6    7.4e-23   81.3   0.1    2.8  3  AMP-binding_C  AMP-binding enzyme C-terminal domain
    2.7e-16   59.2   2.1    6.6e-16   58.0   2.1    1.7  1  ACAS_N         Acetyl-coenzyme A synthetase N-terminus


Domain annotation for each model (and alignments):
>> AMP-binding  AMP-binding enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.2   0.0   1.6e-93   9.6e-90       2     422 ..     143     592 ..     142     593 .. 0.84

  Alignments for each domain:
  == domain 1  score: 301.2 bits;  conditional E-value: 1.6e-93
                  HHHHHHSTTSEEEEE......CCSTEEEEHHHHHHHHHHHHHHHH.HTTSSTT-EEEEEESSSHHHHHHHHHHHHTT-EEEEEETTS-HHHHHHHHHH CS
  AMP-binding   2 eeqaaktpdkvalvd......sgegqtlTYreldervnrlAagLr.slGvkkgdrVaillpnspewvvallailkaGavvvplnptltaeelayiled 92 
                  +++a k+p+kval++      ++e  +lTY+el e+v++lA++L+ s++v+kgd+Va+++p+ p+ +++llai+++Ga+++++ +++++  l+  +++
   CCD26375.1 143 DRHALKNPNKVALIYeaddpsKNESYKLTYKELLEQVSQLAQVLKySMNVQKGDTVAVYMPMIPQALITLLAIVRIGAIHSVVFAGFSSNSLRDRINN 240
                  688999***************999************************************************************************** PP

                  HTESEEEETCTCCC.HHHHHHHHSC.C-EECEEEEESCCS-HCCHCCCHCCCCSCTTS.............-TSCCCS-BTTSEEEEEEE--SSSS-E CS
  AMP-binding  93 seakvliatvdsel.leklleaaak.leavklvivldadellkeeelkeeeeseekae.............kpeeeeelkpddlayiiYTSGTTGkPK 175
                  +++kv+i t+d+ +  +k+ e++   ++a +++ ++++  ++k ++ ++ + ++   +             +  + e+++++++++++YTSG+TG+PK
   CCD26375.1 241 AGSKVVI-TTDESCrGSKIIETKRIvDDALRETPIVEKVLVYKRTNNPAVNFNP---QidldwstemkkykTYYPCEPVDSEHPLFLLYTSGSTGTPK 334
                  *******.3444443333333222102333334444433333333333333222...123445667788884556667******************** PP

                  EEEEEH.HHHHHHHHHHHHHHCSCCTTT-EEEESS-TTSCHHHHHHHHHHHHTT-EEEE-TTCGC.CHHHHHHHHHHHHT-SEEEEEHHHHHHHHHCC CS
  AMP-binding 176 GVmlsh.rnlvanvaslkletrfklkeddvvlsilplahifglilelllallsGatvvllpkdaa.ldpklllelieklkvtviagvPrvleallesg 271
                  GV++s+ ++l++ + +  ++ +f+++++dv+++  ++ +i+g+++ ++++l+ G+t v+++++++ ++  + ++ i+++kvt ++++P++l+ l ++g
   CCD26375.1 335 GVQHSTaGYLLNVLLT--MRYTFDTHQEDVFFTAGDIGWITGHSYVVYGPLSYGCTTVVFEGTPTfPNHSRYWDIIDNYKVTQFYVAPTALRLLKRAG 430
                  ******6666776666..577799999**************************************66688999*********************7765 PP

                  CHHCHHHHCCGTT-SEEEEESS-EBHHHHHHHHHHHTC...EEEEEEEEGGGSSECEE.CHCTTTCTSTTS-BEE-TTEEEEEE-TTTSCBEE..... CS
  AMP-binding 272 alkaakkakdlsslrlvllggeplspellrffralfge...evlegYGlTEttgvvtv.lpleedkkklgsvGkplpgvevkivDeetgepvp..... 360
                  +     k ++l+slr + ++gep+ +e+++++++  g+   +++++Y++TE ++++++ +       k+gs+ +p+ g++  i+D++tge+++     
   CCD26375.1 431 NDH--IKPYSLKSLRCLGSVGEPIAAEVWEWYSKEIGHneiPIIDTYWQTESGAHLITpMAGGVTPMKPGSASFPFFGIDPIILDPNTGEELGtgind 526
                  554..44569*************************999******************87744444446789**********************988888 PP

                  TTSE.EEEEEEET..TS-SEBTT-HHHHHHHEEET.CCEEEEEEEEEEETTSEEEEEEECCCEEEE CS
  AMP-binding 361 dgee.Gellvrgp..gvmkgYlkkpeataeafdse.grwlrTGDlgrldedGyleivgRkkdlikl 422
                  dg+  G l +r+p  g ++  +k++++  e++ ++ ++++ TGD ++ d+dGy++i+gR +d++++
   CCD26375.1 527 DGHAeGILAIRKPwpGFARTIWKNHDRYVETYLTPyQGYYFTGDGAVKDKDGYIWILGRVDDVVNV 592
                  66667*******9778****************987778**************************98 PP

>> AMP-binding_C  AMP-binding enzyme C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.1   6.1e+02      34      71 ..       8      54 ..       2      57 .. 0.63
   2 ?   -2.9   0.0       2.5   1.5e+04       2      19 ..     265     282 ..     265     286 .. 0.81
   3 !   81.3   0.1   1.2e-26   7.4e-23       1      76 []     601     686 ..     601     686 .. 0.90

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.1
                   EE--.-...---..HHHHHHHHH....HHHT-TTTS-SEEEE-S---B CS
  AMP-binding_C 34 vlkd.g...sea..leeeLkahv....rkelgpyavpkkvvfvdelpk 71
                   ++k+ g   + +    ++Lk+++     ++  +y    +v++v++lp 
     CCD26375.1  8 IPKNtGtnnQ-QaeQIKDLKSKAaaeaSQNTKEYEHLTAVKVVQQLPI 54
                   5653133322.1345566666663332568999*************96 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 2.5
                    HHHHHHSSTTEEEEEEE- CS
  AMP-binding_C   2 vEsalvshpaVaeaaVvG 19 
                    v  al + p V+ + V+ 
     CCD26375.1 265 VDDALRETPIVEKVLVYK 282
                    56899999***9999994 PP

  == domain 3  score: 81.3 bits;  conditional E-value: 1.2e-26
                    HHHHHHHSSTTEEEEEEE-----TTS---EEEEEE---....---.......HHHHHHHHHHHHT-TTTS-SEEEE-S---B-TTS- CS
  AMP-binding_C   1 evEsalvshpaVaeaaVvGvpdevkGealvafVvlkdg....sea.......leeeLkahvrkelgpyavpkkvvfvdelpktrsGK 76 
                    e+E+a+++   Vae+aVvG +de++G+a++afVvlk+     + a       ++++L+  vrk +gp+a+pk +v+vd+lpktrsGK
     CCD26375.1 601 EIEAAIIQDNSVAECAVVGFNDELTGQAVAAFVVLKNKsswsT-AsdaeltdIKKHLILTVRKDIGPFAAPKLIVLVDDLPKTRSGK 686
                    8**********************************86444541.13467889**********************************9 PP

>> ACAS_N  Acetyl-coenzyme A synthetase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   2.1   1.1e-19   6.6e-16       1      55 []      76     141 ..      76     141 .. 0.86

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 1.1e-19
                 HHHHHHHHHH-HHHHHHHHHCC.S--SB--S-SE......CST.TTC...T-EESTT-EE-HHHHH CS
      ACAS_N   1 ykelykeSiedpeaFWaeqake.ldWekpfdkvl......dgs.kgp...fikWFeGGklNicyNc 55 
                 yk+ly++Si+dp++F+++ a++ ++W+k+f++v+      d+s + p   + +WF +G+lN+cyNc
  CCD26375.1  76 YKTLYDQSINDPKKFFGDKAHQfINWFKDFNQVYipdldkDSSgNTPsfeNNAWFLNGELNACYNC 141
                 99*******************************8777765222444456679************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       620  (0.0345808); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 5066.96
//
Query:       CCD26376.1  [L=1064]
Description: hypothetical protein NDAI_0H02020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-09   37.4  11.5    7.3e-08   32.3   0.2    5.0  5  Kelch_4   Galactose oxidase, central domain
    3.5e-08   33.2   8.1        1.3    9.1   0.0    6.4  6  Kelch_5   Kelch motif
    1.9e-06   27.6   9.1     0.0077   16.2   0.3    6.0  6  Kelch_2   Kelch motif
    3.9e-06   26.9  10.0      0.007   16.6   0.3    4.6  5  Kelch_6   Kelch motif
    8.6e-06   25.9   0.1      0.058   13.7   0.0    5.0  4  Kelch_3   Galactose oxidase, central domain
    6.3e-05   22.5  12.2    7.7e-05   22.2   0.2    4.6  5  Kelch_1   Kelch motif


Domain annotation for each model (and alignments):
>> Kelch_4  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1         1   3.1e+03       4      20 ..     380     395 ..     379     396 .. 0.86
   2 !    6.0   0.0     0.004        12      14      36 ..     654     680 ..     646     682 .. 0.86
   3 !   32.3   0.2   2.4e-11   7.3e-08      11      44 ..     868     900 ..     856     907 .. 0.84
   4 ?    1.5   0.2      0.11   3.2e+02       3      22 ..     933     951 ..     933     960 .. 0.84
   5 ?    0.9   0.1      0.15   4.6e+02       7      23 ..    1022    1038 ..    1018    1048 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 1
     Kelch_4   4 ghsatsipdgtiylfGG 20 
                 +h+++ +  + +++ GG
  CCD26376.1 380 YHCSVEL-HDQVFILGG 395
                 8999999.589999999 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.004
     Kelch_4  14 tiylfGGrgedg....tllndlylldl 36 
                 ti +fGG+   g    +++ndl+++ +
  CCD26376.1 654 TILVFGGYKQTGddkyEAMNDLWKIEF 680
                 89********999**********9766 PP

  == domain 3  score: 32.3 bits;  conditional E-value: 2.4e-11
     Kelch_4  11 pdgtiylfGGrgedgtllndlylldlstntWrrl 44 
                 ++ ti+++GG  ++ ++lnd++ +dl+t tW+++
  CCD26376.1 868 RNRTIIIHGGSIGN-KVLNDMWWFDLETCTWTKM 900
                 568***********.9****************97 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.11
     Kelch_4   3 aghsatsipdgtiylfGGrg 22 
                 +gh++ts++  +i+  GG  
  CCD26376.1 933 VGHTMTSVG-HYIVSLGGLI 951
                 58******6.9******986 PP

  == domain 5  score: 0.9 bits;  conditional E-value: 0.15
     Kelch_4    7 atsipdgtiylfGGrge 23  
                  +  i  g+i+++GG  +
  CCD26376.1 1022 CSHISCGNIVMIGGVVA 1038
                  4455899*******655 PP

>> Kelch_5  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.031        91       3      23 ..     376     396 ..     376     408 .. 0.90
   2 !    6.3   0.0    0.0033        10       1      42 []     459     519 ..     459     519 .. 0.85
   3 !    8.8   0.0   0.00055       1.7      14      35 ..     652     676 ..     643     680 .. 0.78
   4 !    9.1   0.0   0.00043       1.3      16      41 ..     871     894 ..     852     894 .. 0.79
   5 ?   -2.8   0.2       2.4   7.1e+03       7      25 ..     934     952 ..     931     960 .. 0.78
   6 ?    4.6   0.1     0.011        34      10      32 ..    1022    1044 ..    1018    1048 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.031
     Kelch_5   3 ppRaghcavtvsekiYvyGGk 23 
                 p++++hc+v + +++++ GG 
  CCD26376.1 376 PAFSYHCSVELHDQVFILGGL 396
                 57899**************96 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.0033
     Kelch_5   1 iPppRaghcavtv.sekiYvyGGkv................g..rdgsvsddvyvLdlpsf 42 
                 iPpp+ ++   ++ +  ++++GG+                 +  r+  +++d y+Ld+ +f
  CCD26376.1 459 IPPPLICSQGSKLtERHLFFFGGFEirtdcfpptpndggkyHlkRTAFLNSDGYILDTMTF 519
                 79999999999875788********999999999999877537999999999999998665 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00055
     Kelch_5  14 sekiYvyGGkvg.rdgsv..sddvy 35 
                 s+ i+v+GG+++  d+++   +d++
  CCD26376.1 652 SYTILVFGGYKQtGDDKYeaMNDLW 676
                 589********98666664357777 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00043
     Kelch_5  16 kiYvyGGkvgrdgsvsddvyvLdlps 41 
                  i+++GG +g  ++v +d++ +dl++
  CCD26376.1 871 TIIIHGGSIG--NKVLNDMWWFDLET 894
                 49*******6..********999976 PP

  == domain 5  score: -2.8 bits;  conditional E-value: 2.4
     Kelch_5   7 ghcavtvsekiYvyGGkvg 25 
                 gh +  v+++i   GG ++
  CCD26376.1 934 GHTMTSVGHYIVSLGGLIQ 952
                 7999999999999999886 PP

  == domain 6  score: 4.6 bits;  conditional E-value: 0.011
     Kelch_5   10 avtvs.ekiYvyGGkvgrdgsvsd 32  
                      s ++i ++GG+v+r++++ +
  CCD26376.1 1022 CSHIScGNIVMIGGVVARRSNI-N 1044
                  3344579*********944433.3 PP

>> Kelch_2  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.093   2.8e+02       5      32 ..     381     416 ..     377     418 .. 0.85
   2 ?   -1.6   0.0       1.1   3.2e+03      14      32 ..     476     496 ..     470     503 .. 0.69
   3 ?    1.5   0.0      0.11   3.2e+02      14      29 ..     655     677 ..     654     682 .. 0.74
   4 !   16.2   0.3   2.6e-06    0.0077      14      46 ..     872     901 ..     859     902 .. 0.90
   5 !    6.5   0.1     0.003         9       2      36 ..     932     964 ..     931     969 .. 0.72
   6 ?    0.4   0.2      0.24   7.1e+02       9      20 ..    1025    1036 ..    1018    1048 .. 0.73

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.093
     Kelch_2   5 hsssvpggkiyvvGGa........htdnpnlsssdv 32 
                 h s+ + +++++ GG         +++n n++++d 
  CCD26376.1 381 HCSVELHDQVFILGGLlpcyryeeEAPNLNDFTMDG 416
                 67888899********99999999999999998885 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.1
     Kelch_2  14 iyvvGGa..htdnpnlsssdv 32 
                 ++++GG+   td ++  ++d 
  CCD26376.1 476 LFFFGGFeiRTDCFPPTPNDG 496
                 899****66555555555555 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.11
     Kelch_2  14 iyvvGGa.......htdnpnlss 29 
                 i+v+GG+       ++ +++l+ 
  CCD26376.1 655 ILVFGGYkqtgddkYEAMNDLWK 677
                 89*****8877777666666665 PP

  == domain 4  score: 16.2 bits;  conditional E-value: 2.6e-06
     Kelch_2  14 iyvvGGahtdnpnlsssdvhvldlekhvWeevt 46 
                 i++ GG+    +n + +d++++dle+ +W+++t
  CCD26376.1 872 IIIHGGS---IGNKVLNDMWWFDLETCTWTKMT 901
                 7788***...*********************98 PP

  == domain 5  score: 6.5 bits;  conditional E-value: 0.003
     Kelch_2   2 rgghsssvpggkiyvvGGa.htdnpnlsssdvhvld 36 
                 ++gh+++++g+ i++ GG  + d + l+  d+   d
  CCD26376.1 932 LVGHTMTSVGHYIVSLGGLiQQDVDKLYGKDN---D 964
                 79****************98444444444444...4 PP

  == domain 6  score: 0.4 bits;  conditional E-value: 0.24
     Kelch_2    9 vpggkiyvvGGa 20  
                   ++g i+++GG+
  CCD26376.1 1025 ISCGNIVMIGGV 1036
                  349********8 PP

>> Kelch_6  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.5   4.3e+03       4      20 ..     380     396 ..     377     398 .. 0.74
   2 !    7.2   0.0    0.0022       6.7      13      33 ..     654     678 ..     642     681 .. 0.85
   3 !   16.6   0.3   2.3e-06     0.007      13      42 ..     871     899 ..     860     901 .. 0.84
   4 !    6.4   0.1    0.0039        12       4      23 ..     934     953 ..     932     961 .. 0.85
   5 ?   -3.8   0.1         6   1.8e+04      11      21 ..    1027    1037 ..    1020    1041 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.5
     Kelch_6   4 ghslvsvggkiYifGGy 20 
                 +h +v   ++++i+GG+
  CCD26376.1 380 YHCSVELHDQVFILGGL 396
                 5556666689******7 PP

  == domain 2  score: 7.2 bits;  conditional E-value: 0.0022
     Kelch_6  13 kiYifGGytds....spylnkvwvy 33 
                 +i +fGGy++      ++ n++w++
  CCD26376.1 654 TILVFGGYKQTgddkYEAMNDLWKI 678
                 7************999999999987 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 2.3e-06
     Kelch_6  13 kiYifGGytdsspylnkvwvydpetksWeq 42 
                 +i i GG+ + ++ ln++w++d+et++W++
  CCD26376.1 871 TIIIHGGSIG-NKVLNDMWWFDLETCTWTK 899
                 5667799988.9****************96 PP

  == domain 4  score: 6.4 bits;  conditional E-value: 0.0039
     Kelch_6   4 ghslvsvggkiYifGGytds 23 
                 gh+++svg +i+ +GG+ ++
  CCD26376.1 934 GHTMTSVGHYIVSLGGLIQQ 953
                 89**************9885 PP

  == domain 5  score: -3.8 bits;  conditional E-value: 6
     Kelch_6   11 ggkiYifGGyt 21  
                   g i+++GG +
  CCD26376.1 1027 CGNIVMIGGVV 1037
                  35699999976 PP

>> Kelch_3  Galactose oxidase, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.64   1.9e+03      20      45 ..     439     467 ..     436     469 .. 0.83
   2 ?   -1.8   0.0       1.5   4.4e+03       4      17 ..     476     488 ..     474     490 .. 0.80
   3 !    5.1   0.0    0.0098        29       4      30 ..     655     692 ..     654     723 .. 0.61
   4 !   13.7   0.0   1.9e-05     0.058       2      47 ..     870     938 ..     869     940 .. 0.63

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.64
     Kelch_3  20 dvyvydldtn...tWaeiaslppaRagha 45 
                 ++y+ +l +n   +++++++ pp+  +  
  CCD26376.1 439 NLYLASLPSNhicKVKTSGQIPPPLICSQ 467
                 678888888889999999******99975 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
     Kelch_3   4 lyifGGlgddgqdr 17 
                 l++fGG+  +++d+
  CCD26376.1 476 LFFFGGFE-IRTDC 488
                 89****99.67776 PP

  == domain 3  score: 5.1 bits;  conditional E-value: 0.0098
     Kelch_3   4 lyifGGlgddgqdrl...ndvy..vydldtn......t 30 
                 +++fGG+  +g d +   nd++  ++++++       +
  CCD26376.1 655 ILVFGGYKQTGDDKYeamNDLWkiEFQVEARgkrgycK 692
                 89******9999999999****4444554434555663 PP

  == domain 4  score: 13.7 bits;  conditional E-value: 1.9e-05
     Kelch_3   2 drlyifGGlgddgqdrlndvyvydldtntWa......ei...................aslppaRaghaat 47 
                  ++ i+GG    g+++lnd++ +dl+t tW+      e+                    +++ + +gh++t
  CCD26376.1 870 RTIIIHGGSI--GNKVLNDMWWFDLETCTWTkmtlyaETkdekemmthknekrkeselIPCNLGLVGHTMT 938
                 5678888888..*******************5544441144434444444444443333345566666666 PP

>> Kelch_1  Kelch motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0       0.1   3.1e+02       2      19 ..     378     395 ..     377     403 .. 0.90
   2 ?    0.7   0.0      0.13   3.9e+02      13      31 ..     654     677 ..     652     680 .. 0.86
   3 !   22.2   0.2   2.6e-08   7.7e-05      13      42 ..     871     900 ..     867     901 .. 0.92
   4 ?    3.2   0.1     0.023        68       3      20 ..     933     950 ..     931     957 .. 0.89
   5 ?   -3.7   0.7       3.2   9.5e+03       4      21 ..    1020    1037 ..    1019    1046 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.1
                 BBSEEEEEETTEEEEEEE CS
     Kelch_1   2 ragagavvvggkiYviGG 19 
                  +++++v + ++++++GG
  CCD26376.1 378 FSYHCSVELHDQVFILGG 395
                 689*************** PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.13
                 EEEEEEEBCS.....SSBEEEEEE CS
     Kelch_1  13 kiYviGGsdg.....gnalssvev 31 
                  i v+GG+       ++a+++++ 
  CCD26376.1 654 TILVFGGYKQtgddkYEAMNDLWK 677
                 599*****9999999999999886 PP

  == domain 3  score: 22.2 bits;  conditional E-value: 2.6e-08
                 EEEEEEEBCSSSBEEEEEEEETTTTEEEEE CS
     Kelch_1  13 kiYviGGsdggnalssvevyDpetntWrel 42 
                  i + GGs g++ l++ +++D+et tW+++
  CCD26376.1 871 TIIIHGGSIGNKVLNDMWWFDLETCTWTKM 900
                 68999***********************98 PP

  == domain 4  score: 3.2 bits;  conditional E-value: 0.023
                 BSEEEEEETTEEEEEEEB CS
     Kelch_1   3 agagavvvggkiYviGGs 20 
                  g+++++vg++i  +GG 
  CCD26376.1 933 VGHTMTSVGHYIVSLGGL 950
                 69**************95 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 3.2
                  SEEEEEETTEEEEEEEBC CS
     Kelch_1    4 gagavvvggkiYviGGsd 21  
                  g+++   +g i  iGG  
  CCD26376.1 1020 GCCSHISCGNIVMIGGVV 1037
                  678888899999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1548  (0.0863406); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.47
# Mc/sec: 6829.10
//
Query:       CCD26377.1  [L=268]
Description: hypothetical protein NDAI_0H02030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-20   71.4  19.3    3.5e-19   69.6  14.6    2.9  2  Alb1      Alb1
     0.0021   18.6   1.4     0.0021   18.6   1.4    2.1  2  FAM27     FAM27 D and E protein family
  ------ inclusion threshold ------
        8.6    6.1  11.3         11    5.7  11.3    1.2  1  Draxin    Draxin


Domain annotation for each model (and alignments):
>> Alb1  Alb1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6  14.6   5.8e-23   3.5e-19       6     105 .]      74     195 ..      72     195 .. 0.83
   2 ?   -0.5   0.1      0.37   2.2e+03      36      66 ..     209     235 ..     200     251 .. 0.50

  Alignments for each domain:
  == domain 1  score: 69.6 bits;  conditional E-value: 5.8e-23
        Alb1   6 arraespslnldkslkslprpektdre....rtavlnea.lsagisk..............kkkk.kkkls.kklrlrqekgleraeavterlekKiek 83 
                 ar+aes  +   k+l++++r+e+t+ +    rta++ne+ l+a+ +k              kkk  + kls ++++++++++lera+++t+rl++Ki+k
  CCD26377.1  74 ARQAESSLIPITKDLENITRAEDTNLTniliRTAAKNERlLEAKLKKkeqkksnnnnnrinKKKAiEAKLSqASITSMDKERLERALHFTNRLDGKIAK 172
                 899***99999999*********************************6666666666655422223444442445666666****************** PP

        Alb1  84 sisrakyvqe.RkagwDeinkki 105
                 sisrak vq+ Rkagw+++n++i
  CCD26377.1 173 SISRAKFVQStRKAGWESTNESI 195
                 ********************986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.37
        Alb1  36 vlnealsagiskkkkkkkklskklrlrqekg 66 
                 ++n +ls  i k    ++ + k++   ++ +
  CCD26377.1 209 NKNLHLSTTIDK----NDDIEKDIENANKVA 235
                 444445555555....333333333333333 PP

>> FAM27  FAM27 D and E protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   1.4   3.4e-07    0.0021      39      76 ..      34      71 ..      28      81 .. 0.80
   2 ?   -1.6   0.5      0.67     4e+03      36      36 ..     128     128 ..     103     167 .. 0.56

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 3.4e-07
       FAM27 39 ialwarGtirPrththkgthtqtdrereretrrlrdrr 76
                ia++++ ++  rt+th+ tht+t   r+r ++  ++ +
  CCD26377.1 34 IAIYCTKYLYRRTYTHTHTHTHTHNHRRRGKEVIKEIQ 71
                78899999999*99999999999999999887776633 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.67
       FAM27  36 a 36 
                  
  CCD26377.1 128 N 128
                 1 PP

>> Draxin  Draxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  11.3    0.0019        11      11     173 ..      50     213 ..      42     243 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.0019
      Draxin  11 lalqkkraghhrreglskkeraeagllserpleallraeddgtgleglspvrlemgppaalkerkevflgvklsyqerenkspgselkrkgrkhgrehk 109
                 ++ ++++++h+rr +   ke +e++   e++l  +++  ++ t  e  +  ++ +  +   k+++   +++k + q+++n++++   k+k+ + +  + 
  CCD26377.1  50 THTHTHTHNHRRRGKEVIKEIQETARQAESSLIPITKDLENITRAEDTNLTNILIRTA--AKNERLLEAKLKKKEQKKSNNNNNRINKKKAIEAKLSQA 146
                 3444555555555555555555555556666666666666666666666655555553..344444445555555555555444333333334445555 PP

      Draxin 110 kksrrdkvrkkkgkalepepssllkd...reafedqlqkasleeassplapvllaltalvatvitee 173
                   +  dk r +++ +++++ ++ + +   r +f ++++ka  e+++ ++++ l ++++lv+   + +
  CCD26377.1 147 SITSMDKERLERALHFTNRLDGKIAKsisRAKFVQSTRKAGWESTNESIKRDLISQAGLVTKNKNLH 213
                 55899**********9999977766511134555555555577777777777777777666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2864  (0.159741); expected 358.6 (0.02)
Passed bias filter:                      592  (0.0330191); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 1952.46
//
Query:       CCD26378.1  [L=411]
Description: hypothetical protein NDAI_0H02040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-07   31.5   0.5    4.4e-07   30.0   0.0    2.0  2  zf-C3HC   C3HC zinc finger-like
  ------ inclusion threshold ------
      0.041   12.5   0.6      0.073   11.7   0.2    1.5  2  RdRP      RNA dependent RNA polymerase
       0.29   10.7   5.2       0.45   10.1   5.2    1.3  1  SR-25     Nuclear RNA-splicing-associated protein


Domain annotation for each model (and alignments):
>> zf-C3HC  C3HC zinc finger-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       1.1   6.7e+03      71      82 ..      54      65 ..      38      84 .. 0.51
   2 !   30.0   0.0   7.3e-11   4.4e-07      26      97 ..     163     245 ..     135     280 .. 0.84

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
     zf-C3HC 71 klaekylkqlve 82
                k + +++++l++
  CCD26378.1 54 KIIARFKQSLST 65
                333344333332 PP

  == domain 2  score: 30.0 bits;  conditional E-value: 7.3e-11
     zf-C3HC  26 lselkcAkrGWkcvs.....kdrlkCevCgaslvlkl.....ksseeesdeqlnkklaekylkqlveaHeenClWrnkecp.e 97 
                  +++ +A++GW+  s        +kCe+C++   l+        ++ + ++q+  +l  k+ +++ e+H+ +C W+nk++p  
  CCD26378.1 163 FNPIVLASKGWELSSvenktTLVFKCESCHKCFNLEDhslgeVYNIYSYESQKIPHLSAKLRHMMNEKHSMDCRWKNKQFPlL 245
                 58999*******9665554455689********9998889888889999999***************************9952 PP

>> RdRP  RNA dependent RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   1.2e-05     0.073      99     151 ..      33      85 ..       5     110 .. 0.66
   2 ?   -2.9   0.0      0.33     2e+03     266     340 ..     280     354 ..     272     359 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 1.2e-05
        RdRP  99 isaeeir.kwlgdfenisqsvaKyaaRlglalSttrptvvkvereqii.ieeidD 151
                  ++ +i+ ++ +++e++ ++  K +aR+++ lStt++t ++ +++q    + +dD
  CCD26378.1  33 RDFFDILhEQTLKLEEE-REREKIIARFKQSLSTTKST-ITTNCNQKNrNRFLDD 85 
                 55555551456677555.999****************8.4447776442222444 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.33
        RdRP 266 evflellkealeelrealkdagaaaellkka.gdpskleellaelldsgfdpseldpflrsllkalvkeslrklke 340
                 ++f  l +e +e+++++ +++  +++l + +   ++++++ l  +l++g+d +   p ++++ k ++k  ++kl +
  CCD26378.1 280 SAFPPLTNELIEKFNNSSNNKFTIVSLGAIYnYFKIDMNSSLLLFLSLGYDTTAI-PNIMECSKCFIKVDMEKLIN 354
                 5666677777777777777764433333333366788888888888888887766.88888888888888777765 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.2   7.6e-05      0.45      15      99 ..      47     131 ..      27     145 .. 0.61

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.6e-05
       SR-25  15 geekkrkksskdssrsssasksqsrkassasekeeerskekkkkkrrrssssssssssssssssssssssssdd.....rkkrgkkkdkk 99 
                 +ee++r+k     ++s s++ks+   +++++++++  + e+ + k +++ ++ +++ sss ss sss s ss       +      k+kk
  CCD26378.1  47 EEEREREKIIARFKQSLSTTKSTITTNCNQKNRNRFLDDENIRIKYEPHLTAFQQAISSSLSSQSSSHSLSSPLltslyE-----DKSKK 131
                 45555556666666777777777777777777666555555566666666666666666666666666666555333322.....22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1503  (0.0838307); expected 358.6 (0.02)
Passed bias filter:                      667  (0.0372023); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2829.78
//
Query:       CCD26379.1  [L=385]
Description: hypothetical protein NDAI_0H02050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-30  104.3   1.1    5.6e-30  103.4   1.1    1.5  1  ADH_N          Alcohol dehydrogenase GroES-like domain
    9.9e-23   80.5   0.0    1.5e-22   79.9   0.0    1.3  1  ADH_zinc_N     Zinc-binding dehydrogenase
    2.8e-15   56.4   0.0    3.8e-15   56.0   0.0    1.2  1  Glu_dehyd_C    Glucose dehydrogenase C-terminus
      0.003   18.1   0.2        1.9    9.1   0.1    2.7  2  Pyr_redox      Pyridine nucleotide-disulphide oxidoreductase
     0.0074   15.6   0.1      0.029   13.6   0.1    1.8  2  Pyr_redox_3    Pyridine nucleotide-disulphide oxidoreductase
  ------ inclusion threshold ------
      0.041   13.9   0.1       0.11   12.6   0.1    1.7  2  Shikimate_DH   Shikimate / quinate 5-dehydrogenase
      0.079   13.6   0.2       0.36   11.4   0.1    2.1  2  F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
      0.093   12.0   0.3       0.14   11.4   0.3    1.2  1  FAD_binding_3  FAD binding domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   1.1   2.5e-33   5.6e-30       1     109 []      26     163 ..      26     163 .. 0.96

  Alignments for each domain:
  == domain 1  score: 103.4 bits;  conditional E-value: 2.5e-33
                 TTEEEEEEEEEEE-HHHHHHHTTS...........TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SS.................SH CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkgg...........kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscge.................Ca 71 
                 p+evli+v+++giCg+Dlh +++g             ++ +lp+ +GHE++G v+++g++v+k++vGd+Vvve+   c++                 C+
  CCD26379.1  26 PDEVLIEVSYCGICGTDLHEYTDGpiffpkdgetnPLSNIPLPQPMGHEFSGFVKAIGSNVTKVEVGDKVVVEAGCGCKDvhrwpdsklyekrkdtfCS 124
                 68******************************98878889999***********************************9999999999999999999** PP

                 HHHTT-GGG-TTBEETTTS.S-SSSBSEEEECGGGEEEE CS
       ADH_N  72 aCkegeenlCeeakllgvs.ldGgfaeyvvvpekklvkl 109
                 aC++g +n+Ce+++++g++ + G+fae+vvv e+++vkl
  CCD26379.1 125 ACENGIDNCCENYDFTGLGvVGGAFAERVVVGERHIVKL 163
                 *******************99999************986 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.0   6.9e-26   1.5e-22       1     127 [.     203     332 ..     203     335 .. 0.93

  Alignments for each domain:
  == domain 1  score: 79.9 bits;  conditional E-value: 6.9e-26
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTT.TSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadevinykea.dlverikeltg.gegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgee 95 
                 ++Glaa+ ++ka Ga ++++    e+++ la k+G++++  +k   + v +++ + + + g+d++f+c+G++at+++alk+l  +G+ v v++ g ++ 
  CCD26379.1 203 PIGLAAILALKAHGAsKIVVSELAERRRILASKMGVEVFDPSKHGdNAVTELRNIPRgQHGFDYAFDCSGVKATFNTALKALSFRGCAVNVAIwGPKPI 301
                 79*************9999999999999*******987777777778********97699*********************************999999 PP

                 EEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHH CS
  ADH_zinc_N  96 efdlrnlllkeksilGsllgslreefkealdl 127
                 ++ ++ ++l+ek+++Gs++++  ++f+e+++ 
  CCD26379.1 302 DYYPMEITLQEKNLTGSIGYT-VQDFEEVVAA 332
                 999999***************.8****98876 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   1.7e-18   3.8e-15       2     199 ..     170     361 ..     169     377 .. 0.77

  Alignments for each domain:
  == domain 1  score: 56.0 bits;  conditional E-value: 1.7e-18
  Glu_dehyd_C   2 dvgvLvEPisiveKaielaeasrsafewepesalvlGaGslGLLalalleaeerglervyvlg..rrdrpdptidlveelG.atYvdsretpvdeipe 96 
                  dvg LvEPis++  a+       s+fe + +sal+lGaG++GL a+ +l+a  +g +++ v +   r r   +   ve  + +   d++ t++ +ip 
   CCD26379.1 170 DVGALVEPISVAWHAVRV-----SKFE-KGKSALILGAGPIGLAAILALKA--HGASKIVVSElaERRRILASKMGVEVFDpSKHGDNAVTELRNIPR 259
                  89*********8766644.....3444.5789*************999987..56776655441133333333333555552345578899******* PP

  Glu_dehyd_C  97 aseemdlvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLaalpesl..ldelvtkvvdl 192
                   ++ +d+ +++ G  +    a++al+  G a+ + +  ++   +d      e+ l+ k l Gs+   ++ fe+ v+++++ + s+  +++l+t++++l
   CCD26379.1 260 GQHGFDYAFDCSGVKATFNTALKALSFRGCAVNVAIWGPK--PIDY--YPMEITLQEKNLTGSIGYTVQDFEEVVAAMHKGDISIeeCRHLITGKYKL 353
                  ************************************9999..4444..4567889*************************99999889*********9 PP

  Glu_dehyd_C 193 de.leeAf 199
                  ++ +++ f
   CCD26379.1 354 EDgWDKGF 361
                  86355555 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0068        15      11      35 ..      72      96 ..      70     102 .. 0.90
   2 !    9.1   0.1   0.00085       1.9       2      36 ..     196     230 ..     195     244 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0068
                HHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox 11 glElAgalaelgkkVtvversdkll 35
                g E+ g+ +++g++Vt ve +dk+ 
  CCD26379.1 72 GHEFSGFVKAIGSNVTKVEVGDKVV 96
                88*******************9986 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.00085
                 EEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSST CS
   Pyr_redox   2 vvvvGgGyiglElAgalaelgkkVtvversdkllr 36 
                 ++++G+G igl +  al+++g++  vv    + +r
  CCD26379.1 196 ALILGAGPIGLAAILALKAHGASKIVVSELAERRR 230
                 68*******************88777776665554 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.36   8.1e+02      13      42 ..      83     112 ..      81     116 .. 0.83
   2 !   13.6   0.1   1.3e-05     0.029       1      28 [.     197     224 ..     197     257 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.36
  Pyr_redox_3  13 aielkkagledylilEkgnignsiyrypke 42 
                  + ++ k+++ d +++E g+  + ++r+p +
   CCD26379.1  83 GSNVTKVEVGDKVVVEAGCGCKDVHRWPDS 112
                  6667788888889**************976 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 1.3e-05
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilE 28 
                  +I GaGP+Glaa ++lk +g +++++ E
   CCD26379.1 197 LILGAGPIGLAAILALKAHGASKIVVSE 224
                  699******************9988755 PP

>> Shikimate_DH  Shikimate / quinate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   4.8e-05      0.11      11      57 ..     192     237 ..     184     252 .. 0.83
   2 ?   -3.5   0.0       4.5     1e+04     120     138 .]     311     329 ..     305     339 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.8e-05
                   TT-EEEEES-SHHHHHHHHHHHCCT-CEEEEEESSHHHHHHHHHHHT CS
  Shikimate_DH  11 kekkvlliGaGemaelvakhLlakgvkkvvvaNRtlerakelaeelk 57 
                   k+k +l++GaG ++  ++ +L a+g+ k+vv     er + la++++
    CCD26379.1 192 KGKSALILGAGPIGLAAILALKAHGASKIVVSE-LAERRRILASKMG 237
                   7899***********************998865.5677777887774 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 4.5
                   TGGGSTTCCCEEHHHHHHH CS
  Shikimate_DH 120 evaeledvrlytvDdLkev 138
                   + ++l++   ytv d +ev
    CCD26379.1 311 QEKNLTGSIGYTVQDFEEV 329
                   5556666666777777665 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.7   3.8e+03       5      22 ..     140     157 ..     138     181 .. 0.79
   2 ?   11.4   0.1   0.00016      0.36       4      52 ..     198     242 ..     194     250 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 1.7
                    ETTSHHHHHHHHHHHHTT CS
  F420_oxidored   5 iGaGnmgealasgllaag 22 
                     G G +g a+a++++   
     CCD26379.1 140 TGLGVVGGAFAERVVVGE 157
                    589999999999987555 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00016
                    EETTSHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC-EEEC CS
  F420_oxidored   4 iiGaGnmgealasgllaagaqpheivvansrnpekaeelaeelgvkvta 52 
                    i+GaG +g a ++ l a+g  +++iv + s   e+++ la+++gv+v+ 
     CCD26379.1 198 ILGAGPIGLAAILALKAHG--ASKIV-V-SELAERRRILASKMGVEVFD 242
                    67*****************..99999.6.899999999****9998865 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   6.2e-05      0.14       4      35 ..     196     227 ..     194     232 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 6.2e-05
                    EEEE--SHHHHHHHHHHHHTTHHEEEEESSSS CS
  FAD_binding_3   4 VlIVGaGpaGlmlallLseaGvrvvlvekrst 35 
                     lI GaGp Gl + l L+ +G + ++v   ++
     CCD26379.1 196 ALILGAGPIGLAAILALKAHGASKIVVSELAE 227
                    69************************988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       579  (0.032294); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 2769.09
//
Query:       CCD26380.1  [L=399]
Description: hypothetical protein NDAI_0H02060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.6e-33  114.8   2.2      3e-33  114.0   2.2    1.5  1  ADH_N            Alcohol dehydrogenase GroES-like domain
    7.6e-21   74.4   0.0    1.2e-20   73.8   0.0    1.3  1  ADH_zinc_N       Zinc-binding dehydrogenase
    1.6e-08   34.3   0.0    2.4e-08   33.7   0.0    1.3  1  Glu_dehyd_C      Glucose dehydrogenase C-terminus
     0.0085   16.6   0.1      0.068   13.7   0.1    2.1  2  Pyr_redox        Pyridine nucleotide-disulphide oxidoreductas
  ------ inclusion threshold ------
      0.013   15.1   0.8      0.026   14.1   0.8    1.5  1  DAO              FAD dependent oxidoreductase
      0.015   14.5   1.0      0.026   13.8   1.0    1.2  1  FAD_binding_3    FAD binding domain
      0.022   15.8   0.0      0.038   15.0   0.0    1.4  1  ADH_zinc_N_2     Zinc-binding dehydrogenase
      0.025   13.8   0.8      0.047   12.9   0.8    1.4  1  Pyr_redox_3      Pyridine nucleotide-disulphide oxidoreductas
      0.094   13.0   0.1       0.26   11.5   0.0    1.8  2  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
       0.16   12.5   0.0       0.43   11.0   0.0    1.6  1  NAD_binding_7    Putative NAD(P)-binding


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.0   2.2   1.7e-36     3e-33       1     109 []      26     160 ..      26     160 .. 0.95

  Alignments for each domain:
  == domain 1  score: 114.0 bits;  conditional E-value: 1.7e-36
                 TTEEEEEEEEEEE-HHHHHHHTTS...........TTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE-SS..............SHHHH CS
       ADH_N   1 pgevlikvkaagiCgsDlhilkgg...........kelevklplilGHEivGeveevgpevkklkvGdrVvvepliscge..............CaaCk 74 
                 p+e++i+++++giCg+Dlh +++g           + +   lp+++GHEi+G+v+e+gp+vkk++vGdrVvvep+ +c++              CaaCk
  CCD26380.1  26 PDELIIDISWCGICGTDLHEFQDGpiffpengcchEISGEGLPQAMGHEIAGIVSEIGPKVKKFQVGDRVVVEPTGTCKDryrwpdapnanqeeCAACK 124
                 5899******************************9999****************************************7777777777777788***** PP

                 TT-GGG-TTBEETTTS.S-SSSBSEEEECGGGEEEE CS
       ADH_N  75 egeenlCeeakllgvs.ldGgfaeyvvvpekklvkl 109
                 +g +n+C++ +l+g + ++Ggfae++v++e+k++k+
  CCD26380.1 125 KGLYNICSNLGLVGCGvQSGGFAERMVMNEAKCYKI 160
                 ****************99***************986 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   6.7e-24   1.2e-20       1     128 [.     200     331 ..     200     333 .. 0.88

  Alignments for each domain:
  == domain 1  score: 73.8 bits;  conditional E-value: 6.7e-24
                 HHHHHHHHHHHHTT-.EEEEEESSHHHHHHHHHTTESEEEET..TTC.HHHHHHHHHT.TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSS CS
  ADH_zinc_N   1 gvGlaavqlAkalGa.eviavdsseeklelakklGadeviny..kea.dlverikelt.ggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkg 93 
                 ++Gl ++ +++  G+ ev++  + + +++la+k+Ga +v+++  ++  +  ++++++  gg+g+d+ f+c+G++atl+aa+++l+ +G+ v v++ gk+
  CCD26380.1 200 PIGLGTILALNGHGVtEVVVSEPAKIRRDLAEKMGA-VVYDPmtRDHdESIKYLRSIApGGDGFDYTFDCSGNPATLKAAIECLTFRGTAVNVAIwGKN 297
                 79*********************************6.66666542222455666665577***********************************9999 PP

                 EEEEEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHH CS
  ADH_zinc_N  94 eeefdlrnlllkeksilGsllgslreefkealdll 128
                 + +f +++l+ +eks +Gs++++  ++f+++++ +
  CCD26380.1 298 PVSFLPMDLTHQEKSYTGSMCYT-YHDFEAVIKAF 331
                 999********************.8****998865 PP

>> Glu_dehyd_C  Glucose dehydrogenase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.3e-11   2.4e-08       4     209 ..     169     373 ..     166     375 .. 0.75

  Alignments for each domain:
  == domain 1  score: 33.7 bits;  conditional E-value: 1.3e-11
  Glu_dehyd_C   4 gvLvEPisiveKaielaeasrsafewep.esalvlGaGslGLLalalleaeerglervyvlgrrdrpdptidlveelGatY.......vdsretpvde 93 
                  + L+ Pi+++  a+         ++++p +s+l++G G++GL ++ +l+   +g+++v v    +  + + dl e++Ga+        +d++ + + +
   CCD26380.1 169 AALIQPIAVSWHAVR-------VSKFKPgSSVLIIGGGPIGLGTILALNG--HGVTEVVVS---EPAKIRRDLAEKMGAVVydpmtrdHDESIKYLRS 254
                  555566655544432.......2345553689************888874..788877443...4567889999999997514433335666777888 PP

  Glu_dehyd_C  94 ipeaseemdlvvEaTGsakhafeaiealapnGvaaLlGvpedsevevdggelhrelvleNkalvGsvNanrrhfeaavdtLa..alpeslldelvtkv 189
                  i+     +d+ +++ G+++ + +aie l   G a+ + +  ++ v+     l  +l  + k   Gs+   ++ fea +++++  +++e+  ++++t++
   CCD26380.1 255 IAPGGDGFDYTFDCSGNPATLKAAIECLTFRGTAVNVAIWGKNPVS----FLPMDLTHQEKSYTGSMCYTYHDFEAVIKAFEerRIDEEKAKHMITGR 348
                  8888999****************************99999888555....5666777779*******************99733589999******** PP

  Glu_dehyd_C 190 vdlde.leeAfe....dddetiKtv 209
                  v++++ +++A      ++++tiK +
   CCD26380.1 349 VPIENgVKDAILrlitHKEQTIKII 373
                  **98745555433333777777766 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.69   1.2e+03      11      34 ..      72      95 ..      69     101 .. 0.84
   2 !   13.7   0.1   3.8e-05     0.068       1      50 [.     192     241 ..     192     251 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.69
                HHHHHHHHHHTTSEEEEEESSSSS CS
   Pyr_redox 11 glElAgalaelgkkVtvversdkl 34
                g E Ag+ +e+g kV+ ++ +d++
  CCD26380.1 72 GHEIAGIVSEIGPKVKKFQVGDRV 95
                889*********999988877776 PP

  == domain 2  score: 13.7 bits;  conditional E-value: 3.8e-05
                 EEEEECSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHH CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelgkkVtvversdkllrllDeeaskilqekl 50 
                 +v+++GgG igl    al+ +g    vv    k++r l e++++++ + +
  CCD26380.1 192 SVLIIGGGPIGLGTILALNGHGVTEVVVSEPAKIRRDLAEKMGAVVYDPM 241
                 699*******************9888999999999999999998887766 PP

>> DAO  FAD dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.8   1.4e-05     0.026       2      29 ..     193     223 ..     192     231 .. 0.89

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1.4e-05
                 EEEECTSHHHHHHHHHHHHTT...EEEEESS CS
         DAO   2 vviiGGGiiGlstAyeLarrg...Vtllekg 29 
                 v+iiGGG iGl+t ++L  +g   V++ e +
  CCD26380.1 193 VLIIGGGPIGLGTILALNGHGvteVVVSEPA 223
                 99***************99998888887765 PP

>> FAD_binding_3  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.0   1.4e-05     0.026       3      32 ..     192     221 ..     191     229 .. 0.91

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.4e-05
                    EEEEE--SHHHHHHHHHHHHTTHHEEEEES CS
  FAD_binding_3   3 dVlIVGaGpaGlmlallLseaGvrvvlvek 32 
                    +VlI+G+Gp Gl + l L  +Gv  v+v  
     CCD26380.1 192 SVLIIGGGPIGLGTILALNGHGVTEVVVSE 221
                    69**********************999975 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   2.1e-05     0.038      18     101 ..     257     335 ..     235     373 .. 0.68

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 2.1e-05
                   H-TT-EEEEEES-HHHHH.HHHHHHEEEEEEE..EE--.--.S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHHHHHHH CS
  ADH_zinc_N_2  18 tggegvDvvldtvggealleaslkvlpggGrl..vsig.gpplsaallkpakkrkgrsvkyeflfsmkasaqadileelaalieeGk 101
                    gg+g+D+ +d+ g++a+l+a++++l  +G+   v i  + p+s+  ++++ ++  +s + ++  +      +d +e++ + +ee +
    CCD26380.1 257 PGGDGFDYTFDCSGNPATLKAAIECLTFRGTAvnVAIWgKNPVSFLPMDLTHQE--KSYTGSMCYT-----YHD-FEAVIKAFEERR 335
                   4689**********************5557862466664444666555555533..3334444443.....566.666666666655 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.8   2.6e-05     0.047       1      31 [.     194     224 ..     194     230 .. 0.89

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 2.6e-05
  Pyr_redox_3   1 iIiGaGPaGlaaaielkkagledylilEkgn 31 
                  +IiG+GP+Gl++ ++l+ +g++++++ E ++
   CCD26380.1 194 LIIGGGPIGLGTILALNGHGVTEVVVSEPAK 224
                  6********************9999977665 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       3.2   5.8e+03       3      20 ..     136     153 ..     134     156 .. 0.84
   2 ?   11.5   0.0   0.00015      0.26       1     101 [.     193     293 ..     193     326 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.2
                      EE--SHHHHHHHHHHHCT CS
  Sacchrp_dh_NADP   3 iiGaGsvGqavaellarh 20 
                      ++G+G  + ++ae ++ +
       CCD26380.1 136 LVGCGVQSGGFAERMVMN 153
                      79**********999876 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 0.00015
                      EEEE--SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTS...SEEEE-SSGGGHHHHHHHHHH CS
  Sacchrp_dh_NADP   1 vliiGaGsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkeg...dlvvnlsppissldvlkaCie 91 
                      vliiG+G +G +++  l  h+    e++v ++ k + + la+k+  v  ++++ d ++  + L ++  +g   d   ++s++  +l+ +  C+ 
       CCD26380.1 193 VLIIGGGPIGLGTILALNGHGVT--EVVVSEPAKIR-RDLAEKMGAVVYDPMTRDHDESIKYLRSIAPGGdgfDYTFDCSGNPATLKAAIECLT 283
                      89*******************98..9**99999999.677788889999999999998888888887777888899999999888888888887 PP

                      HT-EEEESS- CS
  Sacchrp_dh_NADP  92 tgvhyvdtsi 101
                       +   v+++i
       CCD26380.1 284 FRGTAVNVAI 293
                      7777777666 PP

>> NAD_binding_7  Putative NAD(P)-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00024      0.43       8      45 ..     191     227 ..     188     293 .. 0.57

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00024
  NAD_binding_7   8 kkvlvvGgGevAarkvrklleagakvtvvapevkeele 45 
                     +vl++GgG++++  +  l   g + +vv++   ++  
     CCD26380.1 191 SSVLIIGGGPIGLGTILALNGHGVTEVVVSEPA-KIRR 227
                    68*********************8777777763.2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       633  (0.0353059); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.44
# Mc/sec: 2699.11
//
Query:       CCD26381.1  [L=476]
Description: hypothetical protein NDAI_0H02070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-77  260.9   6.2    1.6e-77  260.6   6.2    1.1  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
    6.9e-48  161.8   0.0    1.4e-47  160.8   0.0    1.5  1  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.6   6.2   1.8e-81   1.6e-77       1     243 []     204     473 ..     204     473 .. 0.94

  Alignments for each domain:
  == domain 1  score: 260.6 bits;  conditional E-value: 1.8e-81
                    T--TTTTTHHHHHHHHHHHHHHHHTTTS..-STTEEEEEE--SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HHHHHHHHHCSSSSTTHSH CS
  ELFV_dehydrog   1 GGsldrpeaTglGvvyyveemlkklkld..slegkrvaisGsGnvgsyaallltelgakvvavsDssGviydpeGldieellelkeerksvkeykk 94 
                    GGsl+rpeaTg+Gvvy++++m++++     s+ gkrvaisG Gnv+++aal+++elg +vv++sDs+G+i++++G+ +e++++++e++ +++++++
     CCD26381.1 204 GGSLIRPEATGFGVVYFTQAMIDYATKGkeSFVGKRVAISGAGNVAQFAALKVIELGGTVVSLSDSKGCIISETGITTEQVAAIAEAKIKFQSLEQ 299
                    9*********************99655578**********************************************77777777777766666664 PP

                    H.......STSTSEEESHHSHHHHS..S-SEEEE-SSTTSB-HHHHTHTHHTT-SEEE-SSSS-B-HHHHHHHHHTT.........-EEE-HHHHT CS
  ELFV_dehydrog  95 s.......sekkaeyieneeellel..kvdilvPcAtqneideenakalikngvklvvEgANlpttqeAkeileeag.........vlvvpdkaaN 172
                             e+k++y++++ +++++  kvdi++PcAtqne+++++ak l+++gvk+v+Eg+N+++t+eA+e++e a+         v++v +k++N
     CCD26381.1 300 IvgdysafTENKVKYVAGA-RPWTIagKVDIALPCATQNEVSGDEAKGLVAAGVKFVAEGSNMGCTPEAIEVFEIARstaksveenVWYVGGKSSN 394
                    4566999988899*****6.****999************************************************999****************** PP

                    THHHHHHHHHHHHHHCT----HHHHHHHHHHHHHHHHHHHHHHHHHCT-T........HHHHHHHHHHHHHHHHHHHCT CS
  ELFV_dehydrog 173 aGGVtvSslEmlqnlarlswteeevdeklkkimkeifkavveeaeeykqe........lvkganiagfekvaeamkaqG 243
                     GGV vS+lEm+qn++r+ wt+e+vd++lkk m ++f++vv++a+ey++e        l kg nia+f kva+am +qG
     CCD26381.1 395 LGGVGVSGLEMAQNSQRVRWTREKVDSELKKMMLNCFNDVVKAAKEYAVEsnenslpsLFKGGNIASFIKVADAMFDQG 473
                    ************************************************999**************************99 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.0   1.6e-51   1.4e-47       1     129 [.      59     186 ..      59     187 .. 0.99

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 1.6e-51
                      -SEEEEEEEEEE-TTSBEEEEEEEEEEEE-TTSSEEEEEEEETT--HHHHHHHHHHHHHHHHHTTSS-EEEEEEEES-GGGS-HHHHHHHHHHH CS
  ELFV_dehydrog_N   1 pervlqvtvpvkrdnGelevikgyraqhssalgPakGGiRfhpsvnldevkaLaalmtyKnalvdlpfGGakggvkidpkklseeeleritrrf 94 
                      per++q++v++++d+G  ev +gyr+q++sa gP+kGG+Rfhpsvnl+ +k+L++++++Knal++l++GGakgg+++d k+ s++e++ri+ +f
       CCD26381.1  59 PERIIQFRVTWENDQGVQEVAQGYRVQYNSAKGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLDMGGAKGGLCVDLKGRSDNEIRRICYAF 152
                      89******************************************************************************************** PP

                      HHHHG.GG-BTTTEEEEBBTTB-HHHHHHHHHHHH CS
  ELFV_dehydrog_N  95 vrelakkfiGpgiDvpApDvgtgaremawladeyk 129
                      +rel+ ++iG+++DvpA D+g+g re+++l++ y+
       CCD26381.1 153 MRELS-RHIGQDTDVPAGDIGVGGREIGYLFGAYR 186
                      *****.**************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       503  (0.0280551); expected 358.6 (0.02)
Passed bias filter:                      439  (0.0244855); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 3657.37
//
Query:       CCD26382.1  [L=561]
Description: hypothetical protein NDAI_0H02080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.6e-19   69.0   3.8    6.5e-10   39.2   0.1    3.0  3  BTB       BTB/POZ domain
    9.3e-08   32.5   0.0    2.3e-07   31.2   0.0    1.7  1  Ank_4     Ankyrin repeats (many copies)
    1.8e-06   28.4   0.0    8.1e-06   26.3   0.0    2.1  1  Ank_2     Ankyrin repeats (3 copies)
    0.00073   19.9   0.0     0.0088   16.4   0.0    2.6  2  Ank       Ankyrin repeat
     0.0035   17.7   0.1      0.087   13.4   0.0    3.2  2  Ank_3     Ankyrin repeat
  ------ inclusion threshold ------
      0.043   14.1   0.0       0.28   11.6   0.0    2.3  2  Ank_5     Ankyrin repeats (many copies)
       0.11   12.8   0.7       0.33   11.2   0.7    1.8  1  Ntox16    Novel toxin 16


Domain annotation for each model (and alignments):
>> BTB  BTB/POZ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.2   2.1e-10   5.4e-07      11     100 ..     137     236 ..     131     244 .. 0.79
   2 !   39.2   0.1   2.5e-13   6.5e-10       9     110 ..     302     432 ..     295     433 .. 0.80
   3 ?   -2.7   0.0       2.7     7e+03      72     107 ..     460     493 ..     459     496 .. 0.75

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.1e-10
                 S-EEEEETT.....TEEEEE-HHHHHHH-HHHHHHHTST.....TTTTCCCE......EEEETTSGHHHHHHHHHHHHHSEEEC-.CGGGHHHHHHHHH CS
         BTB  11 cDvtlvvgd.....gkefkahkavLaarSpyFkalftsk.....eieessvs......eielddvepeafealLefiYtgeleit.seenleelLaaad 92 
                  Dv++++ +      + + a+k+ L arS++++++++++     +      +      ++  + ++   fe++L+fiY   +  + + +n ++l+++ +
  CCD26382.1 137 HDVIFQFTNsynkdLTYISANKFLLVARSSFMEKQLNGTdceddN------NenngiiTL-PETINQACFEIILKFIYLIPVLHEiNPNNFNDLIKLSN 228
                 5777777777666556799********************765432......223453244.4789999**********9999877889*********** PP

                 HHT-HHHH CS
         BTB  93 llqiprlk 100
                 l++i+ l 
  CCD26382.1 229 LFHIELLP 236
                 ***98765 PP

  == domain 2  score: 39.2 bits;  conditional E-value: 2.5e-13
                 TTS-EEEEETT...........TEEEEE-HHHHHHH-HHHHHHHTST............TTTTCCCE..............EEEETTSGHHHHHHHHHH CS
         BTB   9 elcDvtlvvgd...........gkefkahkavLaarSpyFkalftsk............eieessvs..............eielddvepeafealLef 70 
                 +++Dv +++             +++f+ +++ +  r++yFk +f               +      +                  + +++e++e+++++
  CCD26382.1 302 TYSDVLVRASRaiinegeeqneETRFYPCHLAMLFRADYFKLMFLTPfqertgyemnktR------KtsnntygfeslpiiSF-PKVCKFEVIEIIIRY 393
                 5666666665555555556666899**********************9999997655431......13445688888874333.36789********** PP

                 HHHSEEEC-CGGGHHHHHHHHHHHT-HHHHHHHHHHHHHH CS
         BTB  71 iYtgeleitseenleelLaaadllqiprlkkaceeflkqs 110
                 +Y ++++i+ +e + ++L +ad+l  +rlk+++ + ++qs
  CCD26382.1 394 LYYDNTTIP-WEFAIDILLMADYLLSDRLKTMAATSIIQS 432
                 ********8.**********************99999886 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2.7
                 HHSEEEC-CGGGHHHHHHHH.HHHT-HHHHHHHHHHH CS
         BTB  72 YtgeleitseenleelLaaa.dllqiprlkkaceefl 107
                 Yt+++     +n+e++ +   ++lq+++ +k+ +e +
  CCD26382.1 460 YTAKVIA---QNIEQYCNDDkNRLQLKDAIKKSSERI 493
                 6666555...488888888889999999999887765 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   9.1e-11   2.3e-07       5      55 .]      21      70 ..      19      70 .. 0.97

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 9.1e-11
       Ank_4  5 LhyaaisgrlelvrlLlekgadinaqdnrsGetalhiAakrgnveilklLl 55
                L ya+  g++e++++L+++g+ ina+ +r ++++l  A + g+ +++klLl
  CCD26382.1 21 LCYACRTGDVENADRLISTGVKINAV-DRFDNSPLFLASLCGHENVVKLLL 70
                789***********************.***********************8 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.2e-09   8.1e-06      30      77 ..      21      74 ..      14      79 .. 0.88

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 3.2e-09
       Ank_2 30 LhyAakngnleivklLleh......adndgrtpLhyAarsghleivklLlekga 77
                L yA++ g++e +  L++       +d+  ++pL++A+ +gh+++vklLle+ga
  CCD26382.1 21 LCYACRTGDVENADRLISTgvkinaVDRFDNSPLFLASLCGHENVVKLLLERGA 74
                78******9999*****9566666777999********************9997 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.65   1.7e+03       8      31 ..      23      47 ..      21      48 .. 0.77
   2 !   16.4   0.0   3.5e-06    0.0088       3      27 ..      51      75 ..      50      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.65
                HHHHHTTHHHHHHHH.TTTSTTCBT CS
         Ank  8 lAatngkkriiklLL.hGAnlnald 31
                +A++ g+++ +  L+  G  +na+d
  CCD26382.1 23 YACRTGDVENADRLIsTGVKINAVD 47
                7887787666777997799999998 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 3.5e-06
                BBHHHHHHHHTTHHHHHHHH.TTTST CS
         Ank  3 nTPLHlAatngkkriiklLL.hGAnl 27
                n+PL lA+ +g+++++klLL +GA +
  CCD26382.1 51 NSPLFLASLCGHENVVKLLLeRGA-I 75
                79******************8898.4 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.84   2.2e+03       8      31 .]      23      45 ..      21      45 .. 0.85
   2 !   13.4   0.0   3.4e-05     0.087       3      27 ..      51      74 ..      49      78 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 0.84
       Ank_3  8 lAarsgnleivkfLlenkgadvna 31
                +A+r g++e ++ L+   g+ +na
  CCD26382.1 23 YACRTGDVENADRLIS-TGVKINA 45
                7999999966999999.7999985 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.4e-05
       Ank_3  3 etpLhlAarsgnleivkfLlenkga 27
                ++pL+lA ++g+ ++vk+Lle +ga
  CCD26382.1 51 NSPLFLASLCGHENVVKLLLE-RGA 74
                89*******************.887 PP

>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.064   1.6e+02      20      53 ..      21      54 ..      12      54 .. 0.87
   2 ?   11.6   0.0   0.00011      0.28       1      40 [.      36      74 ..      36      78 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.064
       Ank_5 20 LhvAakygaadvvrlLlargadlnltdsrGltal 53
                L++A++ g  + + +L+  g+ +n+ d   +++l
  CCD26382.1 21 LCYACRTGDVENADRLISTGVKINAVDRFDNSPL 54
                99***************99999999888877776 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00011
       Ank_5  1 LlehgpadvnrldgggntpLhvAakygaadvvrlLlarga 40
                L++ g + +n+ d++ n+pL +A+ +g+ +vv+lLl+rga
  CCD26382.1 36 LISTG-VKINAVDRFDNSPLFLASLCGHENVVKLLLERGA 74
                56667.78899*************************9986 PP

>> Ntox16  Novel toxin 16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   0.00013      0.33       9      57 ..     453     501 ..     448     503 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00013
      Ntox16   9 ehdkLekevekkckksslgsCkdkdncknlidkiakirkcidaRikidr 57 
                 + +kLe+   k   +++ + C+d +n+ +l d i+k  + i  R++id+
  CCD26382.1 453 RVEKLEQYTAKVIAQNIEQYCNDDKNRLQLKDAIKKSSERISERQEIDT 501
                 56788888888888899999***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      388  (0.0216409); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 4110.38
//
Query:       CCD26383.1  [L=128]
Description: hypothetical protein NDAI_0H02090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-12   47.5   0.1    2.1e-12   46.7   0.1    1.4  1  RRM_1         RNA recognition motif. (a.k.a. RRM, RBD, or RNP
     0.0016   18.3   0.0     0.0023   17.8   0.0    1.2  1  RRM_occluded  Occluded RNA-recognition motif
  ------ inclusion threshold ------
      0.019   15.1   0.0      0.027   14.6   0.0    1.5  1  RRM_7         RNA recognition motif


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.1   3.5e-16   2.1e-12       1      69 [.      36     102 ..      36     103 .. 0.95

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 3.5e-16
                 EEEESETTTSSHHHHHHHHHTTSC.EEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGp.iksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fV+n++ d+t e+++ +F++fG  i++i+l++d  + skg+a++eF++ e  e Al+  ng+ ++g+++
  CCD26383.1  36 IFVNNISIDMTPEQIESHFKEFGNhIVRITLFTD--RHSKGCAYIEFDNVEVRELALN-SNGTPFNGSVI 102
                 8********************99626*******9..**********************.********987 PP

>> RRM_occluded  Occluded RNA-recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.8e-07    0.0023       2      68 ..      34     102 ..      33     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.8e-07
  RRM_occluded   2 rtisllplsDtvnkariralveekegeikkivLvpd...heGAivefkdekiagkasLaLdgsefegkkl 68 
                   r+i + ++s  ++ ++i+++++e  ++i++i L++d   +++A +ef++++    ++L  +g+ f+g ++
    CCD26383.1  34 RSIFVNNISIDMTPEQIESHFKEFGNHIVRITLFTDrhsKGCAYIEFDNVEV-RELALNSNGTPFNGSVI 102
                   7899999***************************993334689****99875.47778888888888777 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.0   4.5e-06     0.027       1      32 [.      33      64 ..      33     110 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.5e-06
       RRM_7  1 srkvFvGGlPiDiteeelkatfkefgkvlvdw 32
                sr +Fv  + iD+t e++++ fkefg+ +v  
  CCD26383.1 33 SRSIFVNNISIDMTPEQIESHFKEFGNHIVRI 64
                899***********************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       539  (0.030063); expected 358.6 (0.02)
Passed bias filter:                      447  (0.0249317); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.39
# Mc/sec: 973.49
//
Query:       CCD26384.1  [L=233]
Description: hypothetical protein NDAI_0H02100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-70  237.1  18.8    3.4e-70  236.3  18.8    1.3  1  Nop16     Ribosome biogenesis protein Nop16


Domain annotation for each model (and alignments):
>> Nop16  Ribosome biogenesis protein Nop16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.3  18.8   1.9e-74   3.4e-70       1     210 []       5     227 ..       5     227 .. 0.97

  Alignments for each domain:
  == domain 1  score: 236.3 bits;  conditional E-value: 1.9e-74
       Nop16   1 rqrrkarssvkkakkrkksklkkkvnilgnpiiaenWdkkkTlkqNYkrLGLvaklnapaGgvekklskanekeekekkklee................ 83 
                 r+r+++rssv ka++r k+k ++k+ni++npii++nWd+++Tl+qNYk+LGL+akl++paGg+e++lsk  +k+++  ++ ++                
  CCD26384.1   5 RRRKMNRSSVGKATRRVKDK-QRKINIRSNPIIEKNWDYSLTLSQNYKKLGLRAKLQTPAGGQEADLSKVIRKKPTIPSPYADdddysenesederede 102
                 89******************.*****************************************************99999888899************** PP

       Nop16  84 ....eesdekklskgearieRDeeGkivkviegkkkkeneledpleeleedeekeeeeekkkktevvkeLekeaarekakkerhlsereeewlerLvek 178
                     +e de+k+++geari+RDe+G+++kv++g k+k+ ++++++eel++++++e+     +ktevv+eLe+ a+r+++kk r +s+reeewlerL++k
  CCD26384.1 103 snskDEFDENKIPEGEARIQRDEDGNVIKVVYG-KMKKFDIDQDIEELKNQNNAEA-----SKTEVVRELEAFANRPTVKKDRIQSSREEEWLERLYDK 195
                 ***9999**************************.*************998866655.....68************************************ PP

       Nop16 179 hGdDyeaMarDrkLNpmqqtegdlkrrikkwk 210
                 hGdDy++M++D+kLN++qq+++dlkrr++kwk
  CCD26384.1 196 HGDDYRKMFFDKKLNIYQQSQSDLKRRLTKWK 227
                 *******************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1382  (0.0770818); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.27s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 1684.18
//
Query:       CCD26385.1  [L=429]
Description: hypothetical protein NDAI_0H02110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   5.8e-154  512.8   0.0   6.6e-154  512.6   0.0    1.0  1  PMI_typeI     Phosphomannose isomerase type I
      8e-07   29.0   0.0     0.0008   19.3   0.0    2.5  2  AraC_binding  AraC-like ligand binding domain
     0.0057   16.3   0.0        2.4    7.9   0.0    2.6  2  Cupin_2       Cupin domain


Domain annotation for each model (and alignments):
>> PMI_typeI  Phosphomannose isomerase type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  512.6   0.0  1.1e-157  6.6e-154       1     371 [.       5     390 ..       5     392 .. 0.98

  Alignments for each domain:
  == domain 1  score: 512.6 bits;  conditional E-value: 1.1e-157
                 EEEEEEEEEE-TTBEECGGSHHHHHHHHH-TT....TTSCEEEEEEC--TTS-EECTTTC..CCCHCHHHHHHHTGHHHCCHH..TSS-SEEEEEEEES CS
   PMI_typeI   1 lfkLqcgvqnyaWGkiGsesalakllaasdPs..ieedkpyaElWmgtHpkgpskvlnkk..lkdvvlkellaelresvgkkf..geelpfLfKvLsve 93 
                 lf+L++g+q+yaWGkiGs+sa+a+++++sdPs  ieedkpyaElWmgtH ++ps+++++k  l++++++++  +l++ ++kkf  ++elpfLfKvLs+e
  CCD26385.1   5 LFRLDAGYQQYAWGKIGSSSAVAQFAHHSDPSvkIEEDKPYAELWMGTHKNVPSYNHDTKkaLREIITENPESMLGNGIIKKFqaKDELPFLFKVLSIE 103
                 8********************************************************99999********************96677************ PP

                 S---EEE---HHHHHHHHHH.TCCCHCCCTTTEEEEESS.EEEEEEE..HHHHHHHCCCEHCCHCCCECCHHCCHHHHHHCCH.TTSHHHHCCCCHHCC CS
   PMI_typeI  94 kvlSiqvHPdKklaeilhaadpknYpddNhkpElaiAltdFeglcgfrpleeiveflkkvselaeligeetaksleelvslie.agdpealkkkkvlqk 191
                 kvlSiq+HPdK+l++il a+dp++YpddNhkpE+aiA+tdFeg+cgf+pl+eiv++lk+++el++l+gee +++++e v+ ++  g+ e++ +kk+lq+
  CCD26385.1 104 KVLSIQAHPDKALGKILRAQDPEHYPDDNHKPEMAIAVTDFEGFCGFKPLDEIVDELKRIPELKNLVGEEVSRQFIEGVKPNAvPGSEEDADNKKLLQA 202
                 ***********************************************************************************99999**99******* PP

                 HCHCCCTTTHHCCCHCCCCCCCCCCC-HHHCCCC-HHHHCCHCHHHSTTTTCHCH..TTEEEEEE.TT.EECCHCCHHCECCEEEEEEEEES-EEEEEC CS
   PMI_typeI 192 lFssllnsekekikqklallveriqssdaevnktdlaelidrlneqyPddiGlfa..llLNlvkLnpGEAmflkandphaylsGdivecmaasdnvvRa 288
                 +F++++n++++ +++++++l++r+++++++ + +dl++l+ rln+q+PddiGlf+  llLN+++L++GEA+fl+a+dphay+sGdi+ecmaasdnvvRa
  CCD26385.1 203 VFGKVMNASDDDVVENARSLIKRAHENPSDLQIKDLPDLLIRLNKQFPDDIGLFCggLLLNHCRLKAGEAIFLRAKDPHAYISGDIMECMAASDNVVRA 301
                 *************************************************************************************************** PP

                 CCECCEEECHCCHCH.EEEEEECCCCEE--BSCEECE.....EEEEEECCCCECCEEECCC..TTEEEEE-TTS-EEEEEEECEEEEEEC CS
   PMI_typeI 289 GlTpKfidvkelvemltYkykpsdelklqqtesllda.....svlydppieefavektklk..kgeatilplesasiliaveGtatiivs 371
                 G+TpKf+dvk+lvemltY+y+++d +k++ ++ +++a     s++y+ppieefav++t++k   g++ +++l+++sili+++G+++i+ +
  CCD26385.1 302 GFTPKFKDVKNLVEMLTYTYDSVDGQKMKAES-FDRAsgageSIVYNPPIEEFAVMETTFKnaIGKRQFKGLNGPSILITTKGNGYISTD 390
                 ****************************9887.777778899****************9998889*********************9875 PP

>> AraC_binding  AraC-like ligand binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00096       5.7      43      65 ..     265     287 ..     263     297 .. 0.91
   2 !   19.3   0.0   1.3e-07    0.0008      26      70 ..     377     420 ..     373     426 .. 0.90

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.00096
                   EEE-TT-EEEE-TTS-EEEEE-T CS
  AraC_binding  43 ydlgpGdlfLlppgepHdyesds 65 
                   ++l++G+ ++l+  +pH y s++
    CCD26385.1 265 CRLKAGEAIFLRAKDPHAYISGD 287
                   789****************9986 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 1.3e-07
                   EEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEE CS
  AraC_binding  26 ihyvteGtgrlrlngrtydlgpGdlfLlppgepHdyesdsedgwe 70 
                   i ++t+G+g+++ +g +  ++pG +f++ p++ +++e+++ d ++
    CCD26385.1 377 ILITTKGNGYISTDGVRLKAEPGFVFFIAPETEVELEAEDKD-FT 420
                   89*************************************975.33 PP

>> Cupin_2  Cupin domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00041       2.4      38      59 ..     264     285 ..     262     293 .. 0.89
   2 !    5.5   0.0    0.0023        14      24      54 ..     379     409 ..     374     419 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.00041
                 EEEEETTEEEEE-TT-EEEEEE CS
     Cupin_2  38 eveleaGdsvyfpagtpHrfrN 59 
                  ++l+aG++++  a+ pH+++ 
  CCD26385.1 264 HCRLKAGEAIFLRAKDPHAYIS 285
                 589****************975 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0023
                 EEEESEEEEEECTEEEEEETTEEEEE-TT-E CS
     Cupin_2  24 yVleGegeltvdgeeveleaGdsvyfpagtp 54 
                 +  +G g +  dg + + e+G ++++ + t+
  CCD26385.1 379 ITTKGNGYISTDGVRLKAEPGFVFFIAPETE 409
                 6689*********************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3234.61
//
Query:       CCD26386.1  [L=993]
Description: hypothetical protein NDAI_0H02120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-67  224.6  10.2    7.5e-67  224.0   7.3    2.3  2  UPF1_Zn_bind     RNA helicase (UPF2 interacting domain)
    2.6e-58  197.0   0.0    6.1e-58  195.7   0.0    1.7  1  AAA_12           AAA domain
    1.4e-49  169.2   4.4    6.7e-27   94.9   0.4    2.5  2  AAA_11           AAA domain
    3.3e-27   94.5   0.0    8.2e-27   93.3   0.0    1.7  1  DUF5599          Domain of unknown function (DUF5599)
    6.2e-17   61.9   0.2    6.2e-16   58.7   0.2    2.1  1  AAA_30           AAA domain
    3.1e-13   50.3   0.2    6.6e-13   49.2   0.2    1.5  1  AAA_19           AAA domain
    5.3e-06   26.2   0.6      0.025   14.1   0.1    3.1  3  UvrD-helicase    UvrD/REP helicase N-terminal domain
    1.2e-05   25.1   0.0       0.26   11.0   0.0    3.2  3  Viral_helicase1  Viral (Superfamily 1) RNA helicase
    2.7e-05   24.2   0.0      8e-05   22.7   0.0    1.9  1  ResIII           Type III restriction enzyme, res subunit
      7e-05   22.2   0.1     0.0026   17.1   0.0    3.0  2  DUF2075          Uncharacterized conserved protein (DUF2075)
     0.0009   18.5   0.0       0.81    8.8   0.0    2.5  2  PIF1             PIF1-like helicase
     0.0038   17.1   0.0      0.009   15.9   0.0    1.6  1  Helicase_RecD    Helicase
     0.0074   15.8   0.0      0.017   14.6   0.0    1.6  2  PhoH             PhoH-like protein
  ------ inclusion threshold ------
      0.013   15.3   0.0      0.024   14.4   0.0    1.4  1  DEAD             DEAD/DEAH box helicase
      0.034   13.2   0.0      0.061   12.4   0.0    1.3  1  T2SSE            Type II/IV secretion system protein
      0.073   13.3   0.0        0.2   11.9   0.0    1.7  1  AAA_22           AAA domain
       0.11   12.1   0.1       0.21   11.1   0.1    1.4  1  DUF4088          Protein of unknown function (DUF4088)
       0.19   11.1   0.1       0.33   10.3   0.1    1.3  1  HEM4             Uroporphyrinogen-III synthase HemD


Domain annotation for each model (and alignments):
>> UPF1_Zn_bind  RNA helicase (UPF2 interacting domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.0   7.3   7.6e-70   7.5e-67       1     152 []      70     218 ..      70     218 .. 0.99
   2 ?    0.5   0.0      0.54   5.3e+02      28      54 ..     444     471 ..     442     479 .. 0.77

  Alignments for each domain:
  == domain 1  score: 224.0 bits;  conditional E-value: 7.6e-70
  UPF1_Zn_bind   1 haCaYCgisdpesvvkCaackkwFCngkgktsashivthlvrskhkevslhkesplgdtvleCyncgsknvflLgfipaksesvvvllcrepcasak 97 
                   haC+YCgi++p++vvkC+ c++wFCn+k+ t++shiv+hlv s+h+ vslh++s+lgdtvleCyncg+knvflLgf++akse+vvvllcr pca++k
    CCD26386.1  70 HACSYCGIDSPTCVVKCNSCDRWFCNSKNGTTSSHIVNHLVLSRHNVVSLHPDSDLGDTVLECYNCGCKNVFLLGFVSAKSEAVVVLLCRIPCAQTK 166
                   9*********************************************************************************************887 PP

  UPF1_Zn_bind  98 slkdlnwdlsewqpliedrqllswlvkvpseeeqlrarkisakqiekleelwkkn 152
                      ++nwd+++wqpliedrq+lsw+++ pseee+l+ar i+ +qi+kle++w++n
    CCD26386.1 167 ---NVNWDTDQWQPLIEDRQFLSWVAEEPSEEEKLKARLITPSQISKLEAKWRSN 218
                   ...89***********************************************987 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.54
  UPF1_Zn_bind  28 kgkt.sashivthlvrskhkevslhkes 54 
                   +gkt +++ iv+hl + ++++v + + s
    CCD26386.1 444 TGKTvTSATIVYHLTKIHKDKVLVCAPS 471
                   556658899********99999876555 PP

>> AAA_12  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.7   0.0   6.1e-61   6.1e-58       1     198 [.     626     822 ..     626     823 .. 0.92

  Alignments for each domain:
  == domain 1  score: 195.7 bits;  conditional E-value: 6.1e-61
      AAA_12   1 lerSlferllkkekekvvlLdtqYRmhpeIsrfpsklfYkgkLkdaesvkkrele.aqealeepleplvfidvekseeekekkeksyiNeeEaelvvkl 98 
                 l++Slferl++ + + +  L++qYRm+p +s+fps++fY+g+L+++ ++++r+++  +  ++ +  p++f++  + ee +++  +sy N+ Ea  + ++
  CCD26386.1 626 LKQSLFERLISLG-HIPFRLEIQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVSdSTFPWPIHGVPMMFWANYGREELSSNG-TSYLNRIEAMNCERI 722
                 579**********.***************************************994455667778899999998888888876.*************** PP

      AAA_12  99 vekllkkgseeerkkigvitpYraqvellkkklkekeeekseke..ievntvdgfQGrekdviilslVRsnekkeigflkderrlNValTRAkskliiv 195
                 ++kl+k+g++   ++igvitpY+ q  ++ + ++ +   +++    +ev++vd+fQGrekd+iils+VR+n+++ igfl+d rrlNV lTRAk+ l+i+
  CCD26386.1 723 ITKLFKDGVKP--EQIGVITPYEGQRAYILQYMQMNGAMDKDLYvkVEVASVDAFQGREKDYIILSCVRANDQQAIGFLRDPRRLNVGLTRAKYGLVIL 819
                 ***********..9*****************999765554433355***************************************************** PP

      AAA_12 196 Gnk 198
                 Gn+
  CCD26386.1 820 GNP 822
                 *96 PP

>> AAA_11  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.5   2.7e-24   2.7e-21       1     120 [.     418     520 ..     418     540 .. 0.88
   2 !   94.9   0.4   6.7e-30   6.7e-27     160     260 ..     521     618 ..     513     619 .. 0.87

  Alignments for each domain:
  == domain 1  score: 76.6 bits;  conditional E-value: 2.7e-24
      AAA_11   1 klndsqreaiksalseseitliqGPPGtgKTktivellsqllsrrkseeeksakpriLvCapSNaAvDellerllrglldsegekykpkivRvgnee.e 98 
                 +ln+sq +a++++l+++  +liqGPPGtgKT t + ++ +l        +k +k ++LvCapSN+AvD+l+++l +          ++k+vR+ +++ e
  CCD26386.1 418 QLNESQSKAVQHVLQRPL-SLIQGPPGTGKTVTSATIVYHL--------TKIHKDKVLVCAPSNVAVDHLAAKLRD---------LGLKVVRLTAKSrE 498
                 69***************6.************9999999999........5899********************999.........9***********99 PP

      AAA_11  99 riseavksvsleekvekrleke 120
                 +++++v+++ l + v + ++ e
  CCD26386.1 499 DVESSVSNLALHNLVARGSKGE 520
                 99******99999998877654 PP

  == domain 2  score: 94.9 bits;  conditional E-value: 6.7e-30
      AAA_11 160 kskleqerrklkkerkelskeleeaeesleeevldeaeivltTlsgagsklleklakkfdvviIDEAaqavEpstliPlrlgakkvvLvGDpkQLpatv 258
                  +kl + ++++ + + +  k++ +  ++ e+e+l +a++v++T++gag k+l++    f++v+IDE +qa+Ep++liP+ +gak+v+LvGD+kQL +++
  CCD26386.1 521 LRKLLRLKEEVGELSASDTKRFVKLVRKTESEILAKADVVCCTCVGAGDKRLDTK---FRTVLIDESTQATEPECLIPIVKGAKQVILVGDHKQLGPVI 616
                 556666677777777777888888888999********************99875...****************************************9 PP

      AAA_11 259 is 260
                 ++
  CCD26386.1 617 LE 618
                 86 PP

>> DUF5599  Domain of unknown function (DUF5599)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0   8.2e-30   8.2e-27       1      93 []     270     362 ..     270     362 .. 0.98

  Alignments for each domain:
  == domain 1  score: 93.3 bits;  conditional E-value: 8.2e-30
     DUF5599   1 qtqddisvrWdvglnkkrlasFvlpkldsgelrlvvGDelrlkykgseaeeWegeghvvkltdssseevtleLrssskkaPtevttgFtvefV 93 
                 q+ ++isv+W+++ln+++lasF+l++++++el+++vGDe++l y+g ++ +Weg+g++v+l++s ++ +tleL+ s+  +Pt++ttgFt+ef+
  CCD26386.1 270 QALEHISVTWSLALNNRHLASFALSTFETNELKVAVGDEMILWYSGLQHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFI 362
                 7889************************************************************************999*************7 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.2   6.3e-19   6.2e-16       1     131 [.     418     615 ..     418     622 .. 0.78

  Alignments for each domain:
  == domain 1  score: 58.7 bits;  conditional E-value: 6.3e-19
      AAA_30   1 elnaeQaaavealltsgdrvavltGpAGtGKttalkalreaweaa.ggrviglAptgkaAkvLa........................eelgieastia 74 
                 +ln++Q++av+++l+ +  +++++Gp+GtGKt + ++++ ++++  + +v+++Ap++ a + La                                   
  CCD26386.1 418 QLNESQSKAVQHVLQRP--LSLIQGPPGTGKTVTSATIVYHLTKIhKDKVLVCAPSNVAVDHLAaklrdlglkvvrltaksredvessV---------- 504
                 69*************99..9******************999999879*****************5665555555555544443333330.......... PP

      AAA_30  75 kllkrlk..............................................................grarlepg.tllivDEagmvdtkqlaallk 110
                                                                                      g +rl+++ + +++DE+  +   +   l+ 
  CCD26386.1 505 ------SnlalhnlvargskgelrkllrlkeevgelsasdtkrfvklvrkteseilakadvvcctcvgaGDKRLDTKfRTVLIDESTQATEPE--CLIP 595
                 ......0444444445566666666666666666666666666666667999*****************7799*************9987665..4666 PP

      AAA_30 111 aaekagakvilvGDerQlasV 131
                 +++    +vilvGD++Ql++V
  CCD26386.1 596 IVKG-AKQVILVGDHKQLGPV 615
                 6655.567***********98 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.2   6.6e-16   6.6e-13       1     143 [.     423     614 ..     423     616 .. 0.77

  Alignments for each domain:
  == domain 1  score: 49.2 bits;  conditional E-value: 6.6e-16
      AAA_19   1 qreave.alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae.................atTiHrlal.... 77 
                 q +av+  l++++ l+ ++pGtGKT +  +iv +l ++++   +++l++a+ + A++ l+ +l+ lg++                    +H+l +    
  CCD26386.1 423 QSKAVQhVLQRPLSLIQGPPGTGKTVTSATIVYHLTKIHK---DKVLVCAPSNVAVDHLAAKLRDLGLKvvrltaksredvessvsNLALHNL-Vargs 517
                 889**9899******************************5...69************************888888888888666664455555.25888 PP

      AAA_19  78 ....................................ldfddlltealelle.........eaeeekklqeee.llivDEfqdvdelqyrLlkallgekk 130
                                                     l                         + +k l  ++ ++++DE+ + +e +  L+  ++  +k
  CCD26386.1 518 kgelrkllrlkeevgelsasdtkrfvklvrkteseiL-------------AkadvvcctcVGAGDKRLDTKFrTVLIDESTQATEPE-CLIPIVK-GAK 601
                 8888888888888888777666666554333222221.............24556667774467888888889******99887443.4777777.445 PP

      AAA_19 131 klllvGDpdQliy 143
                 +++lvGD++Ql +
  CCD26386.1 602 QVILVGDHKQLGP 614
                 6*********965 PP

>> UvrD-helicase  UvrD/REP helicase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.5   1.5e+03     145     231 ..     166     273 ..     123     302 .. 0.54
   2 !   14.1   0.1   2.5e-05     0.025       1      68 [.     419     495 ..     419     555 .. 0.76
   3 !    8.7   0.0    0.0011       1.1     252     294 ..     571     611 ..     560     612 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.5
                    TTTTHHHHHHHHHHHHHHCCCCCH....................HHHCCCHHHHHCHHHHHHHHHHHTTCCTTHHCHSS................T CS
  UvrD-helicase 145 dslnldkkkleklikelsksrnik....................keelslskskaeelrelvskakekqlspkelkkaf................e 204
                    +++n+d++++++li++    r+++                    +           ++++l  k+ +++  + +  +a+                +
     CCD26386.1 166 KNVNWDTDQWQPLIED----RQFLswvaeepseeeklkarlitpS-----------QISKLEAKWRSNKDATINDIDAPeeqeeipplllryqdaY 246
                    4455555555555432....2222222344444332222222220...........2222222222221111111111122222234444443555 PP

                    SCSHHHHHHHHHHHHHHHHHHHHTCEE CS
  UvrD-helicase 205 kasdlqkkiaeflkeyqeqkkeenalD 231
                    + +  +  ++++  +y +q+ke++al+
     CCD26386.1 247 EYQRSYGPLIKLEADYDKQLKESQALE 273
                    555566667777777777777777754 PP

  == domain 2  score: 14.1 bits;  conditional E-value: 2.5e-05
                    SSHHHHHHHHS.-SSEE.EEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH..........H CS
  UvrD-helicase   1 lnpeqreaias.lggpi.lveAsAGsGKTfvlaerilrlikeeeiepdrilvvTFTnkAaeElkeRiee..........a 68 
                    ln++q +a+++ l+ p+ l+   +G+GKT +  + i++++++  i+ d++lv    n A + l ++++           +
     CCD26386.1 419 LNESQSKAVQHvLQRPLsLIQGPPGTGKTVTS-ATIVYHLTK--IHKDKVLVCAPSNVAVDHLAAKLRDlglkvvrltaK 495
                    6999*******8777653888999*****875.567777765..58*********************9977777653321 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.0011
                    HHHHHSSEEEESSGGG-BHHHHHHHHHHHTTTTTEEEEE-GGG CS
  UvrD-helicase 252 alrerykeiliDEyQDTnkiQyrilkllasgheelfmvGDpkQ 294
                    +l ++++++liDE   T+ +  + l  +++g +++++vGD kQ
     CCD26386.1 571 RLDTKFRTVLIDE--STQATEPECLIPIVKGAKQVILVGDHKQ 611
                    6789*********..588888899999999999********** PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.3   1.3e+03       2      17 ..     437     452 ..     436     493 .. 0.72
   2 !   10.0   0.0   0.00051      0.51      56     100 ..     570     612 ..     520     616 .. 0.70
   3 !   11.0   0.0   0.00026      0.26     141     233 ..     725     819 ..     700     820 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 1.3
  Viral_helicase1   2 vvhGvpGcGKStlirk 17 
                      +++G pG GK+    +
       CCD26386.1 437 LIQGPPGTGKTVTSAT 452
                      6889999999954444 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00051
  Viral_helicase1  56 alvkstkgkililDEylllhaGyill.laalskaklvilfGDplQi 100
                      ++++ tk++++++DE ++++    +  +    +ak+vil+GD++Q 
       CCD26386.1 570 KRLD-TKFRTVLIDESTQATE--PEClIPIVKGAKQVILVGDHKQL 612
                      3444.68***********994..555345568899**********6 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 0.00026
  Viral_helicase1 141 kvgteveversgelkvetepkgqe.kvlvyltftqalkealgvr.evttvhevqGltfdkVtlvllketdlelis..esrenllvAlTRhrksl 230
                      k ++++ v+ ++ + v+t  +gq   +l+y ++  a+ ++l v+ ev  v   qG + d  +l + + +d+++i   +++  l v+lTR++ +l
       CCD26386.1 725 K-LFKDGVKPEQIG-VITPYEGQRaYILQYMQMNGAMDKDLYVKvEVASVDAFQGREKDYIILSCVRANDQQAIGflRDPRRLNVGLTRAKYGL 816
                      4.555555555555.5666666655889999999999999988899*************99998888888887778899*************** PP

  Viral_helicase1 231 vil 233
                      vil
       CCD26386.1 817 VIL 819
                      997 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0     8e-08     8e-05       4      74 ..     419     482 ..     416     600 .. 0.79

  Alignments for each domain:
  == domain 1  score: 22.7 bits;  conditional E-value: 8e-08
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHG CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleef 74 
                 l+e Q +a++ +l      ++   li+ + GtGKT+++a ++++l+k  +++k+l+ +p++  ++ +  ++
  CCD26386.1 419 LNESQSKAVQHVL------QRPLSLIQGPPGTGKTVTSATIVYHLTKI-HKDKVLVCAPSNVAVDHLAAKL 482
                 6777777777776......456789*********************97.557*******997666666555 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.6e-06    0.0026       4     134 ..     436     611 ..     433     668 .. 0.51
   2 ?    0.9   0.0      0.21   2.1e+02     345     359 ..     804     818 ..     768     821 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 2.6e-06
     DUF2075   4 vlVtGvaGtGKtvvllnllael...................edde......................eertavylsvNhplvl...vlrealakke.ek 57 
                  l++G +GtGKtv   ++++ l                   +                         e + +++++ N   +     lr+ l+ ke  +
  CCD26386.1 436 SLIQGPPGTGKTVTSATIVYHLtkihkdkvlvcapsnvavdH--LaaklrdlglkvvrltaksredvESSVSNLALHNLVARGskgELRKLLRLKEeVG 532
                 69********************55544444444444433330..0333333333334444333333333333333333222222223444444444322 PP

     DUF2075  58 kkkkeafeklssfinnlsef............kkaeekkeepkedvvivDEAhrlltksdqaekqseenqlkelmkrakvvvalvDegQ 134
                 +   ++ +++ +++ ++++               a +k+ + k++ v++DE   +++          ++ l+ ++k ak v+++ D++Q
  CCD26386.1 533 ELSASDTKRFVKLVRKTESEilakadvvcctcVGAGDKRLDTKFRTVLIDESTQATE----------PECLIPIVKGAKQVILVGDHKQ 611
                 222222222222222222223333444566555556666666666666666655555..........6666677766666666666666 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.21
     DUF2075 345 ayrVLLtRGrkGlyi 359
                 +++V LtR+ +Gl+i
  CCD26386.1 804 RLNVGLTRAKYGLVI 818
                 799**********99 PP

>> PIF1  PIF1-like helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00081      0.81       1      66 [.     418     478 ..     418     489 .. 0.84
   2 !    7.1   0.0    0.0027       2.6     135     158 ..     594     617 ..     528     632 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00081
                 ---HHHHHHHHHH......HCTS-EEEEESTTSSCHHHHHHHHHHCHC.TCCCEEEEESSHHHHHCC CS
        PIF1   1 qLneeQkkvfdaiieavlnekgklfFvtGsgGtgKtflwkallkklrs.egkivlavAssGvAalll 66 
                 qLne+Q k+++++       +  l  ++G  GtgKt    +++  l + ++++vl+ A s vA  +l
  CCD26386.1 418 QLNESQSKAVQHV------LQRPLSLIQGPPGTGKTVTSATIVYHLTKiHKDKVLVCAPSNVAVDHL 478
                 5788888888888......344455789**************9998776999**********98777 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0027
                 .-SCCCC-EEEEE--TTS-----S CS
        PIF1 135 idkpFGGktvvlgGDfrQilPvie 158
                 i    G k+v+l GD +Q+ Pvi 
  CCD26386.1 594 IPIVKGAKQVILVGDHKQLGPVIL 617
                 5556699***************94 PP

>> Helicase_RecD  Helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     9e-06     0.009       2      53 ..     438     490 ..     437     521 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9e-06
  Helicase_RecD   2 ltAdRGRGKSaalGlalaaliaegksnilvtapskenvktlfeflak.gleal 53 
                    +++ +G+GK+ + + ++ +l++ +k ++lv+aps+ +v++l + l+  gl+ +
     CCD26386.1 438 IQGPPGTGKTVTSATIVYHLTKIHKDKVLVCAPSNVAVDHLAAKLRDlGLKVV 490
                    7899**********************************999887743133333 PP

>> PhoH  PhoH-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.7e-05     0.017       4      66 ..     418     479 ..     415     517 .. 0.73
   2 ?   -3.8   0.0       7.3   7.2e+03     123     158 ..     579     612 ..     575     629 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-05
                 --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT---- CS
        PhoH   4 pktkeQkeylealkkndivfaiGpaGtGKtylavalavealkkkkvkriiltrpaveageelG 66 
                   +++Q+++++ + +  +  + Gp GtGKt  + ++  +++k +  +++++  p+  a ++l 
  CCD26386.1 418 QLNESQSKAVQHVLQRPLSLIQGPPGTGKTVTSATIVYHLTKIH-KDKVLVCAPSNVAVDHLA 479
                 57899*************************98877766555544.455555555544444555 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 7.3
                 EEE-SGGG--HHHHHHHHTTB-TT-.EEEEEE----- CS
        PhoH 123 vilDEAQnttkeqmkmfltRlGens.kvvvtGdvtqi 158
                 v++DE+  +t+ +   +l+ + +++ +v+++Gd +q 
  CCD26386.1 579 VLIDESTQATEPE---CLIPIVKGAkQVILVGDHKQL 612
                 6667754433332...233333333056778998886 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   2.4e-05     0.024       3      94 ..     422     504 ..     420     543 .. 0.68

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.4e-05
                 HHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   3 iQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskl 94 
                  Q++a++++l+    l++++ G+GKT   +  ++ +++   + ++ k+l+ +P+   +   + +l+ ++ +    v+  ++ ++++d  s +
  CCD26386.1 422 SQSKAVQHVLQRPLSLIQGPPGTGKTVT-SATIVYHLT---KIHKDKVLVCAPSNVAVDHLAAKLRDLGLK----VVR-LTAKSREDVESSV 504
                 699*******999*************98.555555674...68888*********9999999999888874....221.2333333333333 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.1e-05     0.061     110     163 ..     419     467 ..     400     482 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 6.1e-05
       T2SSE 110 aeealkekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderivtv 163
                  +e++++++++vl+++     l l+ G+ g+GKt++  +++  + k ++  v+v
  CCD26386.1 419 LNESQSKAVQHVLQRP-----LSLIQGPPGTGKTVTSATIVYHLTKIHKDKVLV 467
                 4677888888888888.....889*************99999998875444444 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00021       0.2       7      59 ..     435     481 ..     430     531 .. 0.63

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
      AAA_22   7 ilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllre 59 
                 + ++ G++GtGKT++ +++++ l++       +++ v+v++ps    + l+ +
  CCD26386.1 435 LSLIQGPPGTGKTVTSATIVYHLTKI------HKDKVLVCAPSNVAVDHLAAK 481
                 66899****************99543......455555555555533333333 PP

>> DUF4088  Protein of unknown function (DUF4088)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00021      0.21     151     207 ..     497     555 ..     466     565 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00021
     DUF4088 151 vyeakiave..tesgeaareklGelrallklaleyGsiqkeeaqqvleklrrlkPelfr 207
                   +++ +v   + ++ +ar   Gelr ll+l  e G++++ + ++ +  +r+++ e++ 
  CCD26386.1 497 REDVESSVSnlALHNLVARGSKGELRKLLRLKEEVGELSASDTKRFVKLVRKTESEILA 555
                 344444444114567889*********************************99988876 PP

>> HEM4  Uroporphyrinogen-III synthase HemD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00033      0.33     108     202 ..     454     561 ..     431     567 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00033
                 GGGS-.---EEEEEE.-SS.S--HHHHHHHHHTTEEEEEE-SEEEEE-HH..............HHHHHHHHHHTT--.......SEEEESSHHHHHHH CS
        HEM4 108 aeelaeslagkrvll.lrgeiarddlaegLeergaevdevevYetvpaee..............epeelkealkagev.......davvftSpstvrnl 184
                 +  l  ++ +++vl+   ++ a d la++L+  g++v+++++  ++  e+               + e         +       + v   S+s ++++
  CCD26386.1 454 VYHLT-KIHKDKVLVcAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESsvsnlalhnlvargSKGE---------LrkllrlkEEVGELSASDTKRF 542
                 44444.6677788886779999********************99944444566665555555555555.........2555555577888999999999 PP

                 HHH-S-HH.HHHCTSEEEE CS
        HEM4 185 lellkdeg.delkevkvaa 202
                 ++l+++++ + l +++v++
  CCD26386.1 543 VKLVRKTEsEILAKADVVC 561
                 9999999998888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1075  (0.0599587); expected 358.6 (0.02)
Passed bias filter:                      615  (0.034302); expected 358.6 (0.02)
Passed Vit filter:                        78  (0.00435049); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.84u 0.33s 00:00:01.17 Elapsed: 00:00:00.49
# Mc/sec: 6154.91
//
Query:       CCD26387.1  [L=359]
Description: hypothetical protein NDAI_0H02130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.6e-63  212.6  12.3    7.6e-63  212.6  12.3    2.4  2  MBR1      Mitochondrial biogenesis regulation protein 1


Domain annotation for each model (and alignments):
>> MBR1  Mitochondrial biogenesis regulation protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.6  12.3   4.3e-67   7.6e-63       1     208 []       1     233 [.       1     233 [. 0.95
   2 ?  -11.0  13.8         1   1.8e+04      58      67 ..     252     279 ..     234     357 .. 0.36

  Alignments for each domain:
  == domain 1  score: 212.6 bits;  conditional E-value: 4.3e-67
        MBR1   1 lclniFERaVqDpcseaCDteDeek...............elaselsssD..eelsplkeillslsevkieeesengnvgevnslssndpldektsrrq 82 
                 ++l+iFER+VqDp+seaCD+eD ++               +++s +sssD   e++p++ei++++++++++++++n+n++++n        +++ +  +
  CCD26387.1   1 MSLDIFERGVQDPFSEACDNEDVKDllsvstedinpnvvtANTSPISSSDfhGEYRPVEEIQYPQKSSSFYMDNNNNNINNKNR-------NTRNGIGS 92 
                 699************************************9899****************************************8.......55556669 PP

        MBR1  83 nlrkikTapyapnsiseestssntqilrk....kekrseseess....fllrnsrrnSssfihqLSrqslrpsisssnsnttsesksnslnsgdtnnen 173
                 +lrki+Tap++++s+s+ +t++ +++l+k    +e+++++ees+    f+lr++r+nSssfih+LSrqs   ++++sn+n+  ++++++ln++++nn+ 
  CCD26387.1  93 SLRKIRTAPHKLGSLSPLMTQEPFHNLQKatweEEQERQNEESTsplcFPLRRNRANSSSFIHHLSRQS---TNTNSNNNSGIFESPQFLNKQTNNNTI 188
                 ********************************966666666666689**********************...*************************** PP

        MBR1 174 nksn..........atkrlssrsscyaIptHlYgLEkYvsseLDa 208
                 n+sn          ++k+ls++ssc+aIptH+YgLEkYv seLDa
  CCD26387.1 189 NFSNtttptrcnsvTSKPLSRHSSCFAIPTHIYGLEKYVLSELDA 233
                 ***9****************************************7 PP

  == domain 2  score: -11.0 bits;  conditional E-value: 1
        MBR1  58 engnvgevn..................s 67 
                 +n+n ++ n                  +
  CCD26387.1 252 NNNNNNDCNsclcgrdydvpptnykytG 279
                 2222222224444433333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      218  (0.0121591); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2572.70
//
Query:       CCD26388.1  [L=235]
Description: hypothetical protein NDAI_0H02140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-06   27.9   8.0    4.3e-06   26.1   8.0    2.1  1  PIR       Yeast PIR protein repeat
  ------ inclusion threshold ------
      0.057   12.8   6.5      0.078   12.4   6.5    1.2  1  DUF3530   Protein of unknown function (DUF3530)


Domain annotation for each model (and alignments):
>> PIR  Yeast PIR protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   8.0   4.8e-10   4.3e-06       2      17 ..     193     208 ..     192     208 .. 0.91

  Alignments for each domain:
  == domain 1  score: 26.1 bits;  conditional E-value: 4.8e-10
         PIR   2 aaVSQIgDGQiQATTa 17 
                 aa+SQI+DGQiQAT +
  CCD26388.1 193 AAISQITDGQIQATIS 208
                 6*************75 PP

>> DUF3530  Protein of unknown function (DUF3530)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   6.5   8.7e-06     0.078     137     214 ..     155     234 ..     142     235 .] 0.60

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 8.7e-06
     DUF3530 137 peysakasettaaveataadkankasekkaptda.earkahrervrarlqaaiaflnqrgae.nivllghgtgAywaary 214
                 +e s++ s +++a ++t++++a++a+ +++++ + ++ +a  +    ++qa+i++ +++ga  ++v lg g  A+ aa +
  CCD26388.1 155 SEASKSTSAAASASARTTTSAAASAKTTTSAAASkGNVAAISQITDGQIQATISQHTENGAAkSVVGLGAGIVAAAAAML 234
                 22222222222222333333333333333333224566899999999*************9978889****999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1398  (0.0779742); expected 358.6 (0.02)
Passed bias filter:                      549  (0.0306208); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 1781.76
//
Query:       CCD26389.1  [L=569]
Description: hypothetical protein NDAI_0H02150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-63  214.8   8.1    1.7e-63  214.8   8.1    1.5  2  Peptidase_A22B  Signal peptide peptidase


Domain annotation for each model (and alignments):
>> Peptidase_A22B  Signal peptide peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1      0.36   6.4e+03     230     242 ..      95     107 ..      94     111 .. 0.80
   2 !  214.8   8.1   9.5e-68   1.7e-63       6     282 ..     165     500 ..     155     502 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 0.36
                     XXXXXXXXXXXXX CS
  Peptidase_A22B 230 vaYvlgLlitiva 242
                     ++Y +gL+it++ 
      CCD26389.1  95 LSYNAGLFITFAL 107
                     5899*****9976 PP

  == domain 2  score: 214.8 bits;  conditional E-value: 9.5e-68
                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX............XXXX CS
  Peptidase_A22B   6 aetitkkeaillpitaslvlllLylffksl...akeflvv...lltvlivllgvvalasllsplvtrlflkkvelakvk............lefl 82 
                      + +++k  illp+++++ l  +y+ +k+    + + +++    ++++++++  +  ++l ++l++ l+++ ++ +k+k                
      CCD26389.1 165 LDGFDEKYCILLPLSSGVLLCSIYYCIKKGlldQSKLVQYglkAFNFVLMVEVSMISYHLSKYLLHALMRNICQFKKLKpysisnryrltmS--- 256
                     55689999*******************98511123444447667788888888888899999999999999999999996666666665540... PP

                     X....................................XXXX.XXXXXXXXX------S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Peptidase_A22B  83 a....................................ielk.aaeivalllsiviavlwllkrhwilndilglalailviellrlpslkvgalLL 140
                     +                                     +++ +++ +++ +   +  + + k++w+ ++++g+ + +++i+ l++++l++++ +L
      CCD26389.1 257 NaneesditspattkryrlhgdsdkvvdvyasnqlwnLYFTwINTPMCSYFHWNVSTFLYYKNNWMFSNLIGMIMGVNGIRSLKMKNLRTSSYIL 351
                     1555666666666666666666666666666665544333302333444444455555666777******************************* PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..............XXXXXX CS
  Peptidase_A22B 141 vglflYDifwVFgtdvmvevAkeldiPillklPqlsneieeaskfsiLGlGDivlPGllialllrfdiskkkttaeskeaqg.......kYfvvt 228
                     +glf+YDi++VF++++m +vA ++diP++l+lP  + +++e+ +f+iLGlGDi+lPG+++ +++++di+k++ ++ ++e+++       kYf+++
      CCD26389.1 352 IGLFFYDIYFVFFSKIMETVAMKIDIPVKLSLPINFDTVTEEVEFAILGLGDIILPGMFMLVCYKYDIWKWHLNHPDREFHFanwsyigKYFITS 446
                     *********************************************************************************************** PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  Peptidase_A22B 229 lvaYvlgLlitivalalfkaaQPALLYlvPatllvllllallrgelkklwneee 282
                     + +Y+ g+ + +vala   +aQP LLY+vP++l ++l la+l+g+l+++w++++
      CCD26389.1 447 FTGYITGIGLCLVALAKTGKAQPVLLYVVPTLLTSVLGLAWLQGDLEEMWTFRY 500
                     ***************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       921  (0.0513693); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.40
# Mc/sec: 4278.08
//
Query:       CCD26390.1  [L=381]
Description: hypothetical protein NDAI_0H02160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-30  104.8   0.6    4.4e-30  103.8   0.6    1.5  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    7.8e-26   90.6   0.4    1.3e-25   89.9   0.4    1.3  1  ADH_zinc_N    Zinc-binding dehydrogenase
    1.3e-05   26.2   0.0    2.5e-05   25.3   0.0    1.5  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
  ------ inclusion threshold ------
       0.02   14.4   0.0      0.029   13.8   0.0    1.2  1  Epimerase     NAD dependent epimerase/dehydratase family
      0.041   13.2   0.3       0.11   11.7   0.2    1.8  2  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.6   1.2e-33   4.4e-30       2     106 ..      65     170 ..      64     173 .. 0.96

  Alignments for each domain:
  == domain 1  score: 103.8 bits;  conditional E-value: 1.2e-33
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TTBEETTTSS-SSSBSEE CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlCeeakllgvsldGgfaeyv 99 
                 +e+li+vk++g+C++Dlh +kg++ l++klpl+ GHE +G+v +vg++vk++kvGd   +++l   c  C+ C++g+e+ Ce+a+l g++ dG+f++y 
  CCD26390.1  65 NEILINVKYSGVCHTDLHAWKGDWPLPTKLPLVGGHEGSGVVMQVGENVKGWKVGDLAGIKWLNGsCMACELCETGNESNCEHADLSGYTHDGSFQQYA 163
                 89***********************************************************99877********************************* PP

                 EECGGGE CS
       ADH_N 100 vvpekkl 106
                 ++++ ++
  CCD26390.1 164 TADAVQA 170
                 9987665 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.4   3.5e-29   1.3e-25       1     129 [.     215     343 ..     215     344 .. 0.94

  Alignments for each domain:
  == domain 1  score: 89.9 bits;  conditional E-value: 3.5e-29
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC.TSSEEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvGsgatleaalkllkpgGrlvvvGg.gkgeeef 97 
                 g+G++avq+Aka+G +vi++d+ + k el k++G +++i+ ++  d+v++i+e+t+g g++ v++++ s+a+++ ++++++p G++v+vG+  +   + 
  CCD26390.1 215 GLGSLAVQYAKAMGYRVIGIDGGKAKEELFKSMGGEVFIDFTKSkDMVKDIQEATKG-GPQGVINVSVSEAAISLSTQYVRPTGTVVLVGLpAHAYVKS 312
                 89***************************************8888**********65.*********************************55555559 PP

                 EHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  98 dlrnlllkeksilGsllgslreefkealdlla 129
                  ++  + k+++i+Gs +g+ r + +eald++a
  CCD26390.1 313 EVFSHVVKSINIKGSYVGN-RADTREALDFFA 343
                 999999*************.*********987 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0     7e-09   2.5e-05       6     133 .]     252     377 ..     247     377 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 7e-09
                   EEETT.STTHH....HHH-TT-EEEEEES-HHHHH.HHHHHHEEEEEEEEE----.S-EEE-CHHHCTTT-EEEE--GGG...-....-HHHHHHHH CS
  ADH_zinc_N_2   6 vidyr.tedfe....aatggegvDvvldtvggealleaslkvlpggGrlvsiggpplsaallkpakkrkgrsvkyeflfsmkas...aqadileela 94 
                   +id + ++d++    +at ++g + v++   +ea+++ s +++++ G++v +g p       + a  +++   +++  + +k s   ++ad  +e +
    CCD26390.1 252 FIDFTkSKDMVkdiqEAT-KGGPQGVINVSVSEAAISLSTQYVRPTGTVVLVGLP-------AHAYVKSEVFSHVVKSINIKGSyvgNRAD-TREAL 339
                   566666777777774555.66789999987788888*******888****99964.......22232333333333333344445556999.***** PP

                   HHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  95 alieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   ++++ G ++ ++    +l+e+++ ++++e+g+  G+ V+
    CCD26390.1 340 DFFARGLIKSPIK-IVGLSELPKVYDLMEKGQILGRYVV 377
                   ************7.9********************9997 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0     8e-06     0.029       1      71 [.     207     279 ..     207     299 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 8e-06
                 EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHH...T-SEEEE- CS
   Epimerase   1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl..elveldltdrsalerlfkee...qpdavihl 71 
                 +++ Ga+G +Gs  v++ ++ gy+vig+d  + +++  +        v +d+t+++++ + ++e    +p+ vi++
  CCD26390.1 207 VCISGAAGGLGSLAVQYAKAMGYRVIGIDGGKAKEELFK---SmgGEVFIDFTKSKDMVKDIQEAtkgGPQGVINV 279
                 689***************************955554433...2355567777777755554444322367777776 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.53   1.9e+03       9      32 ..      22      45 ..      17      46 .. 0.81
   2 ?   11.7   0.2   3.2e-05      0.11      34      90 ..     210     266 ..     181     286 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.53
                 CSCGCTSEEETTCEETCB---EEE CS
  AlaDh_PNT_C  9 lekffggkgtlaGgvpgvepakvl 32
                 +++f   + t+aG +p +++a v+
   CCD26390.1 22 FKNFLRLQSTAAGSIPKTQKAVVF 45
                 567778899*******88888775 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 3.2e-05
                  ES.TSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHH CS
  AlaDh_PNT_C  34 iG.gGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavk 90 
                   G +G  G  A++ ak++g +V  +D  +a+ e ++s+g++ v +   +++ + + ++
   CCD26390.1 210 SGaAGGLGSLAVQYAKAMGYRVIGIDGGKAKEELFKSMGGE-VFIDFTKSKDMVKDIQ 266
                  4535888999***************************9999.6665555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       464  (0.0258799); expected 358.6 (0.02)
Passed bias filter:                      366  (0.0204139); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 2995.67
//
Query:       CCD26391.1  [L=949]
Description: hypothetical protein NDAI_0H02170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (949 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2065  (0.115177); expected 358.6 (0.02)
Passed bias filter:                      231  (0.0128842); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.08u 0.29s 00:00:01.37 Elapsed: 00:00:00.49
# Mc/sec: 5790.43
//
Query:       CCD26392.1  [L=439]
Description: hypothetical protein NDAI_0H02180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-30  106.1   0.0    2.7e-30  105.8   0.0    1.1  1  Aminotran_1_2  Aminotransferase class I and II


Domain annotation for each model (and alignments):
>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.8   0.0   1.5e-34   2.7e-30       2     316 ..      51     396 ..      50     425 .. 0.86

  Alignments for each domain:
  == domain 1  score: 105.8 bits;  conditional E-value: 1.5e-34
                    EEEESSSSSTTSTTSSHHHHHHHHHHHH....HHHHHTSTTST-BTTHHHHHHHHHHHHHC..TCT....TCHTTGGEGEEEESHHHHHHHHHHHH CS
  Aminotran_1_2   2 dvinLgsneylgdsgkptlpevakaeke....galaggtlneygpidglpeleealakflg..rse....klklkreaavvvgsGagaliealifl 87 
                     +i+L s+  ++ s++  l  v++++++      +  ++  +y+p ++  +l+  ++ +++  +++    +l lk+ + +  + G + ++++++ l
     CCD26392.1  51 RKIDLFSGIATDSSNEVILFTVIQKARQmlakRDNNPPNDLSYLPDRVTTDLKIGIIGLIFkdSCPnygpALLLKKRVVIEPTDGVTGALATAAKL 146
                    578899999999888877777777777744333333344558999999999999999999987333445577777776777888988887777777 PP

                    HHHTT.T-EEEEEESS-THHHHHHHHTTSE.EEEEEBEETTTTEE-HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTT CS
  Aminotran_1_2  88 lklnp.gdeilvpdptyasyknilrlsgge.vvryplyseedfhldlealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkyn 181
                    l+l   +  +++p+p+ ++  n+++++g++ + +yp+   ++ +++ ++++e +++ + g+   +++l  ++ + +G ++t+ee+++++++++  n
     CCD26392.1 147 LTLSSlSNTVWIPEPSPPNTANVFEINGFTnIKYYPYA--KNGEITTKEWLETIRQGSDGSL-QCILLNGCCDSASGIDPTREEWHEIIQTVYDLN 239
                    776651556***************************88..******************9999.9999999************************** PP

                    EEEEEEETTTTCBSSSS..HTHHH..HGGSTTSTT....EEEEEESSSTTSSGGG-EEEEEEEH.........HHHHHHHHHHHHHTS..SHHHHH CS
  Aminotran_1_2 182 lllfvDeaYagfvfgsl..davat..ranveeepn....llivgslsKafGlaGeRvGyilgna.........avvsqlrklsrpfls..ssllqa 258
                    +++++D+ Y+g+ +g++  da  +  ++n+++  +    ++i+ s+   +Gl G  vG ++++          ++   ++++ r +    +++ ++
     CCD26392.1 240 MVPIIDMSYQGLKSGNPssDALVIrtCLNASKFKEwrngIFICHSFKYTMGLWGDDVGSLTIVLpkevagktkEITARMKDIGRYLHPlpPTQSSR 335
                    ****************9766555588888887777888************************7779******99999999999998889******* PP

                    HHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHSTEEEECCSCSSEEEEEETHHC CS
  Aminotran_1_2 259 avaaalsdallkqs...eleemrqrlqkrrkelrdeLaelglkvlasqsgmflltdlsaet 316
                    +v+ +lsd+ lk+    +l+++++  +++ ++l+  L +++l  ++  ++m +  ++s+++
     CCD26392.1 336 LVSLILSDPTLKRAwysNLKNRVESNITMKRRLFHCLHWIDLLETEHRHNMTYTPGFSEQQ 396
                    ************99999****************************************9883 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 3198.49
//
Query:       CCD26393.1  [L=283]
Description: hypothetical protein NDAI_0H02190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.2e-131  437.3   0.1   2.6e-131  437.1   0.1    1.0  1  Macro_2   Macro-like domain


Domain annotation for each model (and alignments):
>> Macro_2  Macro-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.1   0.1  1.5e-135  2.6e-131       7     276 ..       6     275 ..       1     278 [. 0.96

  Alignments for each domain:
  == domain 1  score: 437.1 bits;  conditional E-value: 1.5e-135
     Macro_2   7 krkllnklrivlcdtnevvasllrkslpkslldkdkavcvhhgtleslidslrkddvkhsgekyaivspGnsfGylGGGfdlalfeyfGGkpfetwfrk 105
                 ++++    +i+l d ne+v++l++ ++p+++ +  +++c+hhg+lesl+ s++k++++h+g +ya+vspGnsfGylGGGfdlal++yfGGkpfe+wfrk
  CCD26393.1   6 REETGSMKKIILVDVNEIVVKLWKTYIPQAVPKYSNTLCIHHGKLESLMSSMKKSNTNHPGASYAVVSPGNSFGYLGGGFDLALYNYFGGKPFESWFRK 104
                 3333345589***************************************************************************************** PP

     Macro_2 106 klgnryytvGsatvidltrcllediielrdgiryiihvptvvapsksifqkaeklktGyepvfnamwnslmsapkdvdgliisGlctGyaGvpaeisck 204
                 +lgnry+++Gsatv+dl+ c +e +i  rdgiryiih ptvvap ++i+ ++++++tG epvfnamwn+lm++p d+dglii+GlctGyaGvp+ isck
  CCD26393.1 105 QLGNRYHAIGSATVVDLKLCDEEATIRQRDGIRYIIHCPTVVAPVRPIYDQKNPVRTGIEPVFNAMWNALMHSPPDIDGLIIPGLCTGYAGVPSYISCK 203
                 *************************************************************************************************** PP

     Macro_2 205 smafalslymlqdkiskelknvlimyylgypfedfflesakeeleklGidieslksfnvekdaiealipkrl 276
                 smafal+lym qd+is+el+n+l+m++lgyp+++f+l+ +kee+e+lG+  e+lk +nv  d +e ++p++l
  CCD26393.1 204 SMAFALRLYMCQDTISVELRNILTMFFLGYPYKPFYLDICKEECENLGLAFEKLKEYNVMTDSLEVILPSNL 275
                 *********************************************************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       318  (0.0177366); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2041.23
//
Query:       CCD26394.1  [L=571]
Description: hypothetical protein NDAI_0H02200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.7e-37  128.5  37.3    1.8e-31  109.4  15.0    2.8  3  MFS_1     Major Facilitator Superfamily
    5.9e-14   51.8   8.1    5.9e-14   51.8   8.1    3.0  3  Sugar_tr  Sugar (and other) transporter


Domain annotation for each model (and alignments):
>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4  15.0     2e-35   1.8e-31       1     265 [.      49     317 ..      49     321 .. 0.80
   2 !   24.7  15.9   1.1e-09   9.7e-06     218     353 .]     310     474 ..     304     474 .. 0.77
   3 !   13.2   3.7   3.5e-06     0.031      84     145 ..     419     481 ..     399     494 .. 0.81

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 2e-35
       MFS_1   1 lllaaflsalarsilgpalplalaedlgispseigllltlyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfasslwlllvlrvlqGlga 99 
                 l+l+ f+s+l+++i++ ++   +ae++    +  ++++t + l+  ++++++G lsd  Gr+  +l++ ++f+lg+ll +fa++++ + ++r+++G+ga
  CCD26394.1  49 LWLGSFFSSLDSTIVANIMN-RVAEEFA-ESDKKQWIATSFLLTNTAFQPLYGKLSDITGRKFAVLTAHFFFGLGCLLTCFAQNVTQFSIARAICGMGA 145
                 699*****************.9******.9999******************************************67777989999************* PP

       MFS_1 100 galfpagaaliadwfpkeergraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee.........k 189
                 g++++++ + ++d+ + +erg   g++++ f++G +lg++lggl+++++gWr +f i  ++ +++     l ++  + +   ++p++e+          
  CCD26394.1 146 GGINAMSSITTSDICTTRERGIFQGYANIVFGMGQVLGAPLGGLFLDHIGWRTLFGIQVPMIMFCSY---LTITNVNIKLLHVPPRKERftwknlsriD 241
                 ****************************************************************944...44444444444444444432222222232 PP

       MFS_1 190 gtgpaplvp......awkallkdpvlw......illialllfffgfsglltllplylqevlgls.glllaglllallalvgail.allag 265
                   g  +lv                  +       ll++l++f  + +gl++++ ly  + + l+  ll ++  ++l+++v++i+  +++g
  CCD26394.1 242 IFGSLSLVAtisgilF----------LtstqldKLLLSLFTF--ISFGLFMWIELYYAKERILPfDLLNGS--FGLCSVVTVISsYVVFG 317
                 2222222224331111..........1222335689999988..9999********888888887777777..99999999998555555 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.1e-09
       MFS_1 218 lfffgfsglltllplylqevlglsglllaglllallalvgailallagrlsdrlgr...rrrlllallllllaalglallavt................ 297
                 + + +++g  + +p+ylq   ++s +  +gl+l ++++++a+++l++g++++ + +   +++  ++l+++++ ++gl+++ +                 
  CCD26394.1 310 ISSYVVFGDIFRSPIYLQLIQDIS-VTKTGLFLIIPSIAMAGGSLVTGWILRNTTKnlsHCAYGIILSGVIIQLAGLVIAYLLighlnpslnqlgnvfn 407
                 4445778888999***********.**************************774444776677777777777666666666667777999999888888 PP

       MFS_1 298 .........ssavllll.vlvliGf.glgfvfpsllalasdlappeeagtasglfntagslggalgp 353
                          s ++ +++ +++l+G  g++ + ++ l+ ++  + ++++gt++g+f + +s+g +lg+
  CCD26394.1 408 iamenftsgSRTWKVIFvFSLLLGSyGYSSILVATLVSIVFTIEKSQQGTMTGIFYLWRSIGNVLGA 474
                 8888887743333333334444777788877777777777777*********************996 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 3.5e-06
       MFS_1  84 slw.lllvlrvlqGlgagalfpagaaliadwfpkeergraigllsagfslGailgpllgglla 145
                 ++  +++++ +l + g+++++ a ++ i+    k+++g ++g++++  s+G +lg+ l  +l+
  CCD26394.1 419 TWKvIFVFSLLLGSYGYSSILVATLVSIVFTIEKSQQGTMTGIFYLWRSIGNVLGASLTLVLY 481
                 35556888888999999***************************************9999998 PP

>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   8.1   6.5e-18   5.9e-14      44     184 ..      76     210 ..      44     216 .. 0.84
   2 ?   -1.4   2.8     0.092   8.3e+02     355     425 ..     309     378 ..     242     406 .. 0.60
   3 ?   -4.6  12.5      0.81   7.3e+03      99     174 ..     402     494 ..     301     501 .. 0.71

  Alignments for each domain:
  == domain 1  score: 51.8 bits;  conditional E-value: 6.5e-18
                 ...HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHH CS
    Sugar_tr  44 ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlfvigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvsl 142
                  s    +i+ +fl+  ++ + + g+l+d+ GRk + l+a ++f  g +l+ +a+   +v ++ ++R ++G+g+G++++++++++s i++++ Rg++ ++
  CCD26394.1  76 ESDKKQWIATSFLLTNTAFQPLYGKLSDITGRKFAVLTAHFFFGLGCLLTCFAQ---NVTQFSIARAICGMGAGGINAMSSITTSDICTTRERGIFQGY 171
                 344456999999999999999*********************************...****************************************** PP

                 HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHH CS
    Sugar_tr 143 yqlaitfGilvaaifglglnktsnadgwrillglqlvpalll 184
                  +    +G++++a +g  + +  +   wr l+g+q+ + ++ 
  CCD26394.1 172 ANIVFGMGQVLGAPLGGLFLDHIG---WRTLFGIQVPMIMFC 210
                 *************99988855545...9*****998765444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.092
                 HHHHHHHHHHTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHH CS
    Sugar_tr 355 fialfialfalgwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfagl 425
                  i  ++++  +   p+   l+++++ +++ +++l i   ++   +++++++   +t+++++  ++++  g+
  CCD26394.1 309 VISSYVVFGDIFRSPIYLQLIQDISVTKT-GLFLIIPSIAMAGGSLVTGWILRNTTKNLSHCAYGIILSGV 378
                 34445555555555555555555555544.44444444444555555555555555555544444444444 PP

  == domain 3  score: -4.6 bits;  conditional E-value: 0.81
                 T...............SS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS..-SCCHHHHHHHHHHHHHHHHHHHHHHHHHH.HTSS-TTHHHHHH CS
    Sugar_tr  99 k...............nsvevlivgRvlvGigvGlasvlvPmyisEiA..pkklRgalvslyqlaitfGilvaaifglgl.nktsnadgwrill 174
                                 +++ v++v  +l+G + G  s+lv +++s +    k+  g++++++ l+ ++G +++a ++l+l  +t ++  w +++
  CCD26394.1 402 LgnvfniamenftsgsRTWKVIFVFSLLLG-SYGYSSILVATLVSIVFtiEKSQQGTMTGIFYLWRSIGNVLGASLTLVLyRNTLAKRLWIYMF 494
                 044444444444666689************.67*******999999873445555************************987777789999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       637  (0.035529); expected 358.6 (0.02)
Passed bias filter:                      318  (0.0177366); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.57u 0.26s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4175.96
//
Query:       CCD26395.1  [L=803]
Description: hypothetical protein NDAI_0H02210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-65  219.6   0.4    8.4e-65  218.2   0.0    1.9  2  Peptidase_M41  Peptidase family M41
    4.1e-42  143.7   0.0    8.4e-42  142.7   0.0    1.6  1  AAA            ATPase family associated with various cellular
    6.5e-13   48.3   0.0      2e-12   46.7   0.0    1.9  1  AAA_lid_3      AAA+ lid domain
    1.1e-09   38.6   0.6    2.8e-09   37.3   0.6    1.7  1  FtsH_ext       FtsH Extracellular
     0.0021   17.8   0.0     0.0047   16.7   0.0    1.6  1  RuvB_N         Holliday junction DNA helicase RuvB P-loop dom
     0.0021   18.1   0.0     0.0085   16.1   0.0    2.1  1  AAA_5          AAA domain (dynein-related subfamily)
     0.0035   17.8   0.4       0.01   16.2   0.0    2.0  1  AAA_17         AAA domain
     0.0043   16.3   0.0     0.0086   15.3   0.0    1.4  1  TIP49          TIP49 P-loop domain
     0.0044   17.1   0.0      0.012   15.7   0.0    1.7  1  AAA_2          AAA domain (Cdc48 subfamily)
     0.0046   17.4   2.1      0.055   13.9   0.1    3.1  3  AAA_16         AAA ATPase domain
     0.0066   16.6   0.6        0.3   11.3   0.0    2.6  2  AAA_33         AAA domain
  ------ inclusion threshold ------
      0.021   15.1   1.1          1    9.6   0.0    2.4  2  AAA_28         AAA domain
       0.03   14.6   0.1       0.67   10.2   0.1    2.6  2  AAA_22         AAA domain
      0.034   13.9   0.0      0.072   12.8   0.0    1.5  1  IstB_IS21      IstB-like ATP binding protein
       0.04   13.9   5.8       0.11   12.4   5.8    1.7  1  pRN1_helical   Primase helical domain
      0.097   13.0   0.5       0.36   11.2   0.5    2.0  1  TcdB_N         TcdB toxin N-terminal helical domain


Domain annotation for each model (and alignments):
>> Peptidase_M41  Peptidase family M41
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       1.8     2e+03     136     158 ..      56      78 ..      43     108 .. 0.55
   2 !  218.2   0.0   7.5e-68   8.4e-65       2     190 ..     575     755 ..     574     756 .. 0.97

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.8
                    S-HHHHHHHHHHHHHHHHHHHHH CS
  Peptidase_M41 136 lseetaeeideevkelveeayer 158
                      +e  e+i ee+++ +e++ ++
     CCD26395.1  56 ATDEDLEKIKEEIRKYIEARERN 78 
                    55555566666666666655443 PP

  == domain 2  score: 218.2 bits;  conditional E-value: 7.5e-68
                    X--HHHHHHHHHHHHHHHHHHCCSSS-S-B--EES--TTS.-----------TSS--BHHHHHHHHHHHHHHHHHHHHHHHS-BGGGHHHHHHHHH CS
  Peptidase_M41   2 visekekklvAyHEaGHalvglllkeadpveKvtiiPRgq.alGltlslPeedklsltkeellarlavllGGraaEelifgevttGasnDlekatk 96 
                    ++s  ekk+vAyHEaGHa++g++lk adp+ Kv+iiPRgq alG++++lP +    l++++l +r++++lGGr++Eel+f +vt+Gas+Dl+k+t+
     CCD26395.1 575 LLSPDEKKVVAYHEAGHAICGWFLKYADPLLKVSIIPRGQgALGYAQYLPGDI-FLLSEQQLKHRIIMSLGGRVSEELHFSSVTSGASDDLKKITS 669
                    57899*********************************************988.89**************************************** PP

                    HHHHHHHTS---TTT-S--------..----.------SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHSEE-HHHHHH CS
  Peptidase_M41  97 iarkmvtefGmsdklGpvsleeeeeeevflgkelkkekelseetaeeideevkelveeayerakeileekreelealaeaLlekEtldaeeiee 190
                    +a++mvt++Gms+k+G++++++++++        + +k++seet ++id+ev ++++e++++++++l+ek+ ele++a+ Ll+kE+l++e++ +
     CCD26395.1 670 MATAMVTQLGMSEKIGWINYQKRDDS--------DLTKPFSEETGDHIDSEVLRIIHECHTKCTALLKEKAVELEKVAQFLLKKEVLTREDMIN 755
                    **********************9994........4579****************************************************9976 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   0.0   7.5e-45   8.4e-42       2     131 ..     359     491 ..     358     492 .. 0.97

  Alignments for each domain:
  == domain 1  score: 142.7 bits;  conditional E-value: 7.5e-45
                 EEESSTTSSHHHHHHHHHHHHTHEEEEEETTTCSSSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGHHHHH....TTCCCHHHHHHHHHHHHHHHHT CS
         AAA   2 llyGppGtGKTllakavakelgvefleisgsellskyvgesekkirelfkeakekakpsilfiDEidalaksr....sgseseeeervvnqLlteldgv 96 
                 +l+GppGtGKTllaka a e+gv+f+ +sgse+++++vg +++++r+lfk+a+e+a psi+fiDEida++k+r     +++++e+e+++nq+l e+dg+
  CCD26395.1 359 ILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEMFVGVGAARVRDLFKTARENA-PSIVFIDEIDAIGKARqkgnFSGANDERENTLNQMLVEMDGF 456
                 79*****************************************************9.****************998877899***************** PP

                 TTSSSTEEEEEEESSGGGSTHHHHS.TTSSEEEETT CS
         AAA  97 kkkeskvivigatnrpdkldpallr.gRfdrkieie 131
                 + +++ v+v++ tnrpd ld+allr gRfdr+i+i+
  CCD26395.1 457 TPSDH-VVVLAGTNRPDILDKALLRpGRFDRHINID 491
                 **877.***************************986 PP

>> AAA_lid_3  AAA+ lid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.8e-15     2e-12       5      44 ..     520     559 ..     516     560 .. 0.93

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 1.8e-15
   AAA_lid_3   5 keLAerTeGySGADlaalcreAallAlrrgikeitmedfe 44 
                 ++LA++T+G+ GAD+a++c+eAal A r + +++  e+fe
  CCD26395.1 520 NRLAALTPGFAGADIANVCNEAALIAARNDQPSVRLEHFE 559
                 56*************************************8 PP

>> FtsH_ext  FtsH Extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.6   2.5e-12   2.8e-09       8     104 ..     161     255 ..     157     259 .. 0.79

  Alignments for each domain:
  == domain 1  score: 37.3 bits;  conditional E-value: 2.5e-12
    FtsH_ext   8 allllllllslfg.gsgtgstkeisyseFl.edleqgnvekvvvqestisalirrptgdgvsttkkgnstttystptlgsvesleekLeealkskgvdv 104
                 ++l ++ll++l   +++++ +kei+++eF+ + l++g+v+k  v ++++     +  ++  ++++   s + ++++t+gs +s+e kL +a+k+++ + 
  CCD26395.1 161 IGLTFFLLSFLVDaFNTAEERKEITWQEFYaTLLSKGYVSKLFVINKSVV----KVILNDNGKNSPEHSGNDFYYFTIGSIDSFEHKLADAQKDANLEI 255
                 3445555555555699999***********99999**********99999....33333334777777778888888888**************99775 PP

>> RuvB_N  Holliday junction DNA helicase RuvB P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.2e-06    0.0047      36      99 ..     358     429 ..     320     444 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.2e-06
      RuvB_N  36 vllyGpPGlGkttlakiiakelgvklkitsgPv.lekagdl.aalltnl......eekdvlfideihrlsra 99 
                  +l+GpPG Gkt lak  a e gv +   sg   +e    + aa + +l      ++  ++fidei  + +a
  CCD26395.1 358 AILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEfVEMFVGVgAARVRDLfktareNAPSIVFIDEIDAIGKA 429
                 589*************************99975144433331222333211111133479999999877665 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.6e-06    0.0085       3     124 ..     359     472 ..     357     481 .. 0.70

  Alignments for each domain:
  == domain 1  score: 16.1 bits;  conditional E-value: 7.6e-06
                 EEE--SSSSHHHHHHHGGGGBS--EEEEE--TT--HHHHH--B--.........--------..G-SEEEEESGGG--HHHHHHHHHHHHSSEEE..-S CS
       AAA_5   3 lLvGppGtgKselaerlaaalnreveyvqltrdtteedlkgrreikngttslvdsplvraar..egeilvlDEveraesevlnsLlslleerrllleeg 99 
                 +L GppGtgK+ la+  a   + ++  v ++++ +    +g  ++           l + ar   ++i+++DE++ + ++ ++   s  +++r      
  CCD26395.1 359 ILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEMFVGVGAARV---------RDLFKTARenAPSIVFIDEIDAIGKARQKGNFSGANDEREN---T 445
                 89******************************8876666666665.........6666666667899********99977776555555444443...2 PP

                 SSEEE---........-EEEEEESS-- CS
       AAA_5 100 gelvkaknddller..frviatanpld 124
                  +++ ++ d++++   + v+a +n++d
  CCD26395.1 446 LNQMLVEMDGFTPSdhVVVLAGTNRPD 472
                 233333333333334578888888777 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.3e-06      0.01       2     124 ..     362     482 ..     361     492 .. 0.78

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 9.3e-06
                 E-TTSSHHHHHHHHHHHHTEEEE.EHHHHHHHHHHTTTSHSSHHHHCTSHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-SEEEETTEEEESSHHHHHHH CS
      AAA_17   2 GgPGsGKgtqceklvekygfthl.saGdllreeakrgglakardemrklpleekkelqkeaaekiaeeakkkgvlvdghprikeqagfldglpkevlee 99 
                 G+PG GK+ +++  + + g++++   G+ + e+    g+a+ rd ++++ ++    +    +++i ++++k+++         e++  l ++ +e+   
  CCD26395.1 362 GPPGTGKTLLAKATAGEAGVPFYfVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGAND----ERENTLNQMLVEMDGF 456
                 9*****************99975366*********************99999999998888999***999999987554....4456677788887544 PP

                 H...SEEEEEE.--HHHHHHHHHHHTT CS
      AAA_17 100 lkp.daiille.adpeeilerrlkdrt 124
                   p d++++l  ++  +il++ l + +
  CCD26395.1 457 T-PsDHVVVLAgTNRPDILDKALLRPG 482
                 4.4377777663455578877777654 PP

>> TIP49  TIP49 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   7.6e-06    0.0086      51      89 ..     356     392 ..     311     400 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 7.6e-06
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       TIP49  51 ravLlaGpsgtGktalaiaiskelgedvpfvalsgsevy 89 
                 r+ +l+Gp+gtGkt la a + e g  vpf ++sgse+ 
  CCD26395.1 356 RGAILSGPPGTGKTLLAKATAGEAG--VPFYFVSGSEFV 392
                 7899******************988..*********975 PP

>> AAA_2  AAA domain (Cdc48 subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.1e-05     0.012       7      98 ..     359     448 ..     356     461 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
                 EEE--TTSSHHHHHHHHHHHTT-....-EEEEEGGG-------THHHHHHHHHTTT-HHHHTTS.EEEEETGGG----....---------HHHHHH CS
       AAA_2   7 lllgptgvGktelakalaellfvkkekkliradaselleeeevehlvsrligappgyvgaeegG.ivllDEidKihpk....essgadvSregVqrd 98 
                 +l gp g+Gkt+laka+a    v    ++  +  se+ e   +   v    +   + +++e+   iv++DEid i +     + sga+  re+ ++ 
  CCD26395.1 359 ILSGPPGTGKTLLAKATAGEAGV----PFYFVSGSEFVE---MFVGVGAARVRDLFKTARENAPsIVFIDEIDAIGKArqkgNFSGANDERENTLNQ 448
                 5789*****************98....************...66677777777777777776658********887754334444455555555555 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       1.9   2.1e+03      81     131 ..      50     103 ..       9     115 .. 0.51
   2 !   13.9   0.1   4.9e-05     0.055      20      58 ..     351     388 ..     344     397 .. 0.79
   3 ?    0.4   0.0      0.66   7.4e+02     123     152 ..     403     431 ..     397     464 .. 0.71

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 1.9
      AAA_16  81 llrqlldeaesaeleawrekleeala.....avpelagaeasrllellkrllalls 131
                 ll++ ++   + +le  +e++++ ++      +++ ++ +++++ ++l+rl + l+
  CCD26395.1  50 LLQDKKAT--DEDLEKIKEEIRKYIEarernNGKDTDPVKKEQIDNELRRLEETLR 103
                 33322222..2345555555555555666663333333333455555555443333 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 4.9e-05
      AAA_16  20 rsgrpelvllsGesGvGKsslvrellralekdggiflrg 58 
                  +  p+  +lsG++G+GK+ l+++ + ++    ++f++g
  CCD26395.1 351 GAKIPRGAILSGPPGTGKTLLAKATAGEAGVP-FYFVSG 388
                 45557999**************9998777666.666666 PP

  == domain 3  score: 0.4 bits;  conditional E-value: 0.66
      AAA_16 123 lkrllallsrderplvlvlDdlqwadeasl 152
                 +++l++ +++   p ++++D+++ +  a +
  CCD26395.1 403 VRDLFKTARE-NAPSIVFIDEIDAIGKARQ 431
                 4555555666.6679999999996655544 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.5      0.13   1.5e+02     108     142 ..      65     100 ..      59     101 .. 0.83
   2 !   11.3   0.0   0.00027       0.3       3      39 ..     359     397 ..     358     443 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.5 bits;  conditional E-value: 0.13
      AAA_33 108 eetlkeRlakRaangddrs.evpeealdrqkarfer 142
                  e++++ +++R++n+++++  v++e++d+ ++r+e+
  CCD26395.1  65 KEEIRKYIEARERNNGKDTdPVKKEQIDNELRRLEE 100
                 5899999*******9666525899999999999886 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00027
      AAA_33   3 llvGlpGsGKstlaerllkklg..avllssdtlrrrlfg 39 
                 +l G+pG+GK+ la+  + + g  ++++s  ++ ++ +g
  CCD26395.1 359 ILSGPPGTGKTLLAKATAGEAGvpFYFVSGSEFVEMFVG 397
                 678***************999998888887776555554 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.6     0.079        88      26      70 ..      63     108 ..      50     115 .. 0.84
   2 ?    9.6   0.0   0.00091         1       3      35 ..     359     396 ..     358     431 .. 0.74

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.079
      AAA_28  26 vvpEaareileeklakgedalpwv.edllafaervleeqleeeaaa 70 
                  ++E  r+++e + ++++++ + v ++ ++ + r+lee l++++  
  CCD26395.1  63 KIKEEIRKYIEARERNNGKDTDPVkKEQIDNELRRLEETLRNQEGE 108
                 578999*****************999***********999876544 PP

  == domain 2  score: 9.6 bits;  conditional E-value: 0.00091
      AAA_28   3 vitGgestGKTtlleaLa.argypvv....pEaareil 35 
                 +++G+++tGKT l++a a + g+p +     E++ +++
  CCD26395.1 359 ILSGPPGTGKTLLAKATAgEAGVPFYfvsgSEFVEMFV 396
                 689*************9954577743123555555555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1    0.0006      0.67       9      26 ..     359     376 ..     355     391 .. 0.83
   2 ?    1.0   0.0      0.42   4.8e+02      83     129 ..     404     467 ..     398     472 .. 0.58

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0006
      AAA_22   9 vvtGesGtGKTtllrrll 26 
                 ++ G++GtGKT+l++  +
  CCD26395.1 359 ILSGPPGTGKTLLAKATA 376
                 799***********9866 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.42
      AAA_22  83 eqalrarav..ielliiDEaqhlr...s........eealeeL.rsllnl...srkgvqliLvG 129
                 ++ +++++   ++++ iDE++ +    +        +e  ++L  +l++      ++  ++L+G
  CCD26395.1 404 RDLFKTAREnaPSIVFIDEIDAIGkarQkgnfsganDERENTLnQMLVEMdgfTPSDHVVVLAG 467
                 55555555566799********976651445556665555555323333333445555555555 PP

>> IstB_IS21  IstB-like ATP binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   6.5e-05     0.072      50     101 ..     358     409 ..     351     434 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 6.5e-05
   IstB_IS21  50 ivllGpsGvGKshlaialgveavraglsvlfvrvedLveelkrarrdgklar 101
                  +l Gp+G+GK+ la a + ea    + v+     +++  + +ar  + +++
  CCD26395.1 358 AILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEMFVGVGAARVRDLFKT 409
                 6899*************88776444444444445555555666666555554 PP

>> pRN1_helical  Primase helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   5.8    0.0001      0.11       2      54 ..      55     111 ..      54     118 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.0001
  pRN1_helical   2 kkededleklkeemaky....drykgktleaireelckeikkkleelkgkdekkakk 54 
                   k  dedlek+kee++ky    +r +gk  + +++e   +  ++lee   ++e  ak+
    CCD26395.1  55 KATDEDLEKIKEEIRKYiearERNNGKDTDPVKKEQIDNELRRLEETLRNQEGEAKR 111
                   6789*************77767899********999999889999987777777765 PP

>> TcdB_N  TcdB toxin N-terminal helical domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5   0.00032      0.36      22      53 ..      54      83 ..      51      95 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00032
                HHHHHHHHHHHHHHHHHHHHHSTT-TTH...H CS
      TcdB_N 22 skkkyellkklkkeidnYnnlykkeknsrkGs 53
                +k+  e l k+k+ei+ Y+ +   e+n++k+ 
  CCD26395.1 54 KKATDEDLEKIKEEIRKYIEA--RERNNGKDT 83
                6677899**************..*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1238  (0.0690501); expected 358.6 (0.02)
Passed bias filter:                      818  (0.0456244); expected 358.6 (0.02)
Passed Vit filter:                       101  (0.00563333); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 5203.68
//
Query:       CCD26396.1  [L=559]
Description: hypothetical protein NDAI_0H02220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-96  322.8  10.8    1.4e-96  322.8  10.8    1.5  2  mRNA_stabil  mRNA stabilisation
    2.3e-14   53.6   0.2    6.1e-14   52.3   0.2    1.8  1  RsfS         Ribosomal silencing factor during starvation
  ------ inclusion threshold ------
      0.073   12.8   1.4      0.071   12.9   0.3    1.5  2  DUF5127      Domain of unknown function (DUF5127)
        7.1    6.4   8.7       0.61    9.9   1.0    2.7  3  Cnd1_N       non-SMC mitotic condensation complex subunit 1, 


Domain annotation for each model (and alignments):
>> mRNA_stabil  mRNA stabilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.3   5.9e+03      17      40 ..      98     120 ..      93     138 .. 0.57
   2 !  322.8  10.8  3.2e-100   1.4e-96       2     288 .]     249     543 ..     248     543 .. 0.98

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 1.3
  mRNA_stabil  17 lqsekeensldllksivdtlkqlp 40 
                  ++++++  s++l k++++ +++lp
   CCD26396.1  98 IAHSNK-SSIELNKFLKNRFNSLP 120
                  333333.35555555555555555 PP

  == domain 2  score: 322.8 bits;  conditional E-value: 3.2e-100
  mRNA_stabil   2 lsalskqdfdsakkllqsekeensldllksivdtlkqlp.ieeekevdvekwkklfdsawplvlpke...askyWslrlkflkllnvanpqayslrrf 95 
                   +++++++f++a++ll+se+ + +ld+l++++ ++k+ p ++ e++v++ +wk++fd++wpl+lpk+   ++kyW+lrl+fl++l++++pq y++r++
   CCD26396.1 249 NKFIKENEFENADQLLHSEEGFFDLDVLSRLKVIYKHRPhSNIENNVNIPNWKCYFDKHWPLILPKDgieSEKYWKLRLQFLTSLHKKYPQLYTTRCI 346
                  6889***********************************8899**************************9**************************** PP

  mRNA_stabil  96 fkdylllKkslgeeltkedLvefLkivltnkeksknysdLvksnkvvvkaLklykdlee....siikdeevislllktmvsdeekkt.lnslyEvvdy 188
                   kdy+llKks+g++lt++d+v+fLk +l + +   n+++L+++nk++v++L+ly +++e    +ii+++evislll+++++d+++ + +n+l+E++ y
   CCD26396.1 347 SKDYFLLKKSNGFQLTTADFVAFLKSLLLTPC--INKQSLIERNKTIVEMLSLYLSSAEvsmeAIITNPEVISLLLRSLINDDRTIVlQNPLQELLVY 442
                  ********************************..**********************9999999***********************99********** PP

  mRNA_stabil 189 lvdtfe.keltskviasileiLaeakdwkkllqfWetkikllepesDkrpWaeFlklivesgdsellrkiiedGhLLwlkRlnveiteeLkeqleklf 285
                  ++++ + k++++k+i+sil++L+e++dwkk++ fW+t+i+++ p+sD+rpWa+F++l++e++d ++++k++++GhLL+lkR+n++i+e+L+++le+lf
   CCD26396.1 443 FKTRGWsKKPQRKIIISILDTLFELRDWKKVFLFWNTQISRIGPDSDDRPWAHFIHLFNETNDLSTMKKLVTEGHLLQLKRFNTPIDENLRKNLEELF 540
                  ****999******************************************************************************************* PP

  mRNA_stabil 286 eka 288
                  +k+
   CCD26396.1 541 NKV 543
                  997 PP

>> RsfS  Ribosomal silencing factor during starvation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.2   1.4e-17   6.1e-14       2      99 .]      64     189 ..      63     189 .. 0.84

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.4e-17
                 HHHHHHHHTT-EEEEEEE-TTTTBSS-SEEEEEEESSHHHHHHHHHHHHHHHHHC.C---EEECB.T............................TS.S CS
        RsfS   2 eiaealedkkaedivvidlrekkssladymviatakserhlkalaeelekklkeeaaealsveGl.n............................egdd 71 
                 ei++ l++   +d++++d r +    + ++v+ t ks  h +++  el+k+lk++ ++ +++eGl +                            ++d+
  CCD26396.1  64 EITSELQKLGLTDVKIFDQRPN---NKGILVVSTTKSIAHSNKSSIELNKFLKNRFNSLPDKEGLiSstdtkklqrrlerrkkikanfnnkqkvgKQDN 159
                 678889999999********94...5789************************995555666666413455666667777777777777888888899* PP

                 EEEEE-S..SEEEEEEECCCHHHHHHHHHC CS
        RsfS  72 Wvlvdlg..dvvVhllteeaReeydLEelW 99 
                 Wv+++++  d++V+++t e+R+e++LEelW
  CCD26396.1 160 WVMIKCHvdDIFVNMITAERRKELNLEELW 189
                 ******999********************* PP

>> DUF5127  Domain of unknown function (DUF5127)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.3   1.6e-05     0.071     132     225 ..     123     222 ..      64     224 .. 0.79
   2 ?   -3.4   0.0       1.5   6.8e+03     114     138 ..     236     260 ..     228     264 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.6e-05
     DUF5127 132 ngklantkdtnf..raisddwpvfalahdlgsvssesksvvfaiGyvrdpaiqylg......qnlrpyWrskyssiedalsaflkdyaaalkrsealDk 222
                 +g + +++dt+   r+ + ++++ a   + ++v+++ ++ v+   +v+d  ++ ++       nl+ +W +  ++ e   +++ kdy+ ++++s+  D+
  CCD26396.1 123 EGLI-SSTDTKKlqRRLERRKKIKANFNNKQKVGKQ-DNWVMIKCHVDDIFVNMITaerrkeLNLEELWATTEEEREYYQDKAAKDYQYTKQQSTVEDD 219
                 4444.444444448999999999999999****774.66666679**********9999998999****99988899999***************9999 PP

     DUF5127 223 kir 225
                 +i 
  CCD26396.1 220 NIL 222
                 885 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 1.5
     DUF5127 114 sltyqsgedtevrkqFvkngklant 138
                 s+t +s    ++ ++F+k+ + +n+
  CCD26396.1 236 STTSSSRRTPTLLNKFIKENEFENA 260
                 2667777888999999999998664 PP

>> Cnd1_N  non-SMC mitotic condensation complex subunit 1, N-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.0   0.00014      0.61      39     122 ..     103     198 ..      65     200 .. 0.77
   2 ?   -0.9   0.2       0.3   1.3e+03      85     113 ..     445     474 ..     444     477 .. 0.88
   3 ?   -0.5   0.1      0.21   9.6e+02      97     122 ..     524     549 ..     519     553 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00014
      Cnd1_N  39 knaLemygfllqwlvealekessskssaasasa....rgrkkk......kkkkkkkeeaw.dweaqrerileliakv...lelklsrlfqttserdeF 122
                 k+ +e   fl   + ++ +ke   +s+++++ +    r +  k      +k+k  k+++w   + ++ +i+  ++++    el+l+ l+ tt e+ e+
  CCD26396.1 103 KSSIELNKFLKNRFNSLPDKEGLISSTDTKKLQrrleRRK--KikanfnNKQKVGKQDNWvMIKCHVDDIFVNMITAerrKELNLEELWATTEEEREY 198
                 5555666666666666666666666666555555554333..23468988889999****9999*******999999777899***********9887 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.3
      Cnd1_N  85 eeawdweaqrerileliakvlel.klsrlf 113
                 +  w+ ++qr+ i+  + +++el +++++f
  CCD26396.1 445 TRGWSKKPQRKIIISILDTLFELrDWKKVF 474
                 678******************998888887 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.21
      Cnd1_N  97 ileliakvlelklsrlfqttserdeF 122
                 + + i + l+ +l+ lf+  ++++++
  CCD26396.1 524 FNTPIDENLRKNLEELFNKVDPEEQY 549
                 55556677999************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       887  (0.0494729); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.45
# Mc/sec: 3760.94
//
Query:       CCD26397.1  [L=477]
Description: hypothetical protein NDAI_0H02230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      531  (0.0296168); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3419.82
//
Query:       CCD26398.1  [L=514]
Description: hypothetical protein NDAI_0H02240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.2e-44  148.8   0.5    1.4e-43  148.1   0.5    1.4  1  UTP15_C      UTP15 C terminal
    6.3e-19   68.0   5.5      0.002   18.9   0.2    6.6  6  WD40         WD domain, G-beta repeat
    5.9e-07   29.7   0.0      0.037   14.3   0.0    5.0  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
      0.004   17.2   0.1        6.5    6.8   0.0    3.8  3  BBS2_Mid     Ciliary BBSome complex subunit 2, middle region


Domain annotation for each model (and alignments):
>> UTP15_C  UTP15 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.5   3.1e-47   1.4e-43       2     147 .]     367     512 ..     366     512 .. 0.96

  Alignments for each domain:
  == domain 1  score: 148.1 bits;  conditional E-value: 3.1e-47
     UTP15_C   2 ykgeeadivie..ekkkkklkkydklLrkfryskALdavlekkvekspevvvtlleeLrhRgalraALagrdeeslepiLkfllkhitdpryvsllvdv 98 
                 y+g+++ iv +   k++++l+ +++ +++f++++ALd+++ +++  ++e ++t+l+eLr+Rg++r AL +rde+slep+L+++lk i+d+r + +++d+
  CCD26398.1 367 YQGDQEYIVHNdkMKQQRRLRAFERNINQFKWADALDNAFVPGM--AKELTLTVLQELRKRGKIRVALYNRDESSLEPLLNWCLKGIEDVRSTIVVADW 463
                 78999999997345599*************************77..***************************************************** PP

     UTP15_C  99 anvlldlyseklgqseeldelvkrLkrkvreevelakellelkGmlell 147
                 + v+l+ly++++++s++l+e++  L++kvr+ev +ake ++++Gml++l
  CCD26398.1 464 IAVVLELYGDVFESSPVLQEMIVALRDKVRQEVYKAKESQRIEGMLQML 512
                 ************************************************8 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.2    0.0077        35       7      25 ..      36      55 ..      30      67 .. 0.76
   2 !    5.9   0.0    0.0056        25       3      38 .]      73     109 ..      71     109 .. 0.79
   3 !   18.9   0.2   4.5e-07     0.002       9      38 .]     124     153 ..     115     153 .. 0.80
   4 !   13.9   0.0   1.7e-05     0.077       3      38 .]     160     197 ..     158     197 .. 0.66
   5 ?    4.5   0.0     0.015        69      10      38 .]     212     239 ..     204     239 .. 0.69
   6 !   15.3   0.0     6e-06     0.027       8      38 .]     249     286 ..     243     286 .. 0.82

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0077
                EESSSSEEEEEEETTSSE.E CS
        WD40  7 ltGHssvtslafspdgaw.l 25
                 + H+svt++af+p ++  +
  CCD26398.1 36 VKEHNSVTHIAFNPQHPHdF 55
                468*9*********988762 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0056
                 EEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgawlasGsdDgtvriWd 38 
                  ++t++  ++ v+s +f +dg++l++G+  g v i+d
  CCD26398.1  73 VIKTFSRFKDvVYSASFRSDGKLLCAGDATGLVSIYD 109
                 566776666756************9998788888887 PP

  == domain 3  score: 18.9 bits;  conditional E-value: 4.5e-07
                 SS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   9 GH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +H ++vt +  s+d++ l+++sdD+ +r+Wd
  CCD26398.1 124 THpTHVTKF-HSQDNKTLITASDDRVIRLWD 153
                 676779999.6667777778999*******9 PP

  == domain 4  score: 13.9 bits;  conditional E-value: 1.7e-05
                 EEEEEESSSS....EEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   3 clrtltGHss....vtslafspdgaw.lasGsdDgtvriWd 38 
                 ++ +lt+ ++    vt++   p+ +  ++sGs+Dg vr++d
  CCD26398.1 160 PTLELTAATDyvrsVTCV---PSAPHmIVSGSYDGVVRLYD 197
                 555666663343346666...55555378**********98 PP

  == domain 5  score: 4.5 bits;  conditional E-value: 0.015
                 S.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  10 H.ssvtslafspdgawlasGsdDgtvriWd 38 
                 H ++v ++  s + + ++s++  ++ +iWd
  CCD26398.1 212 HeQPVEDI-ISISPTQIVSCG-GPNFKIWD 239
                 76666666.4445555789**.*******9 PP

  == domain 6  score: 15.3 bits;  conditional E-value: 6e-06
                 ESS..SSEEEEE.....EETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH..ssvtsla.....fspdgawlasGsdDgtvriWd 38 
                 +G   +svt+l+      sp ++ l+++s Dg+v+++d
  CCD26398.1 249 RGNfnKSVTCLDyiqdpQSPMNQTLIASSLDGHVKVFD 286
                 4776567*****998888888888998999******98 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0017       7.4      33      78 ..      34      79 ..       9      86 .. 0.83
   2 !   14.3   0.0   8.2e-06     0.037      41      76 ..      84     119 ..      79     137 .. 0.77
   3 ?    0.1   0.0      0.23     1e+03      47      70 ..     134     157 ..     123     178 .. 0.77
   4 ?    0.8   0.0      0.13     6e+02      51      71 ..     182     202 ..     165     264 .. 0.75
   5 ?   -0.5   0.0      0.35   1.6e+03      35      68 ..     250     288 ..     235     308 .. 0.65
   6 ?   -3.4   0.0       2.8   1.3e+04      61      72 ..     327     338 ..     316     356 .. 0.52

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0017
  ANAPC4_WD40 33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78
                 +  ke ++v+++a++p+      ++s ++v+++++ + +v++++s 
   CCD26398.1 34 QLVKEHNSVTHIAFNPQHPHDFAVTSSTRVQIFSSRTRQVIKTFSR 79
                 5568899*********99888888999**************99975 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 8.2e-06
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesgkvvhsl 76 
                  v s +++ dgklL+ + + g v+++d+++ +++  +
   CCD26398.1  84 VYSASFRSDGKLLCAGDATGLVSIYDSYNPRTILLS 119
                  667799***********************8876533 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.23
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesg 70 
                  ++d+k L  a +d  +rl d++++
   CCD26398.1 134 SQDNKTLITASDDRVIRLWDISNA 157
                  578899999999999999999876 PP

  == domain 4  score: 0.8 bits;  conditional E-value: 0.13
  ANAPC4_WD40  51 klLavaysdgevrlldaesgk 71 
                  ++++ +  dg vrl+d  +  
   CCD26398.1 182 HMIVSGSYDGVVRLYDTRTSS 202
                  778888889999999887654 PP

  == domain 5  score: -0.5 bits;  conditional E-value: 0.35
  ANAPC4_WD40  35 dkedsevrsLaW.....kpdgklLavaysdgevrlldae 68 
                   + +++v++L +     +p ++ L  +  dg+v+++d  
   CCD26398.1 250 GNFNKSVTCLDYiqdpqSPMNQTLIASSLDGHVKVFDPA 288
                  556666777766332223446778888888888888755 PP

  == domain 6  score: -3.4 bits;  conditional E-value: 2.8
  ANAPC4_WD40  61 evrlldaesgkv 72 
                   + +   +++k 
   CCD26398.1 327 LLAIRTKKKEKK 338
                  333333333333 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.51   2.3e+03      68      82 ..      23      37 ..      21      51 .. 0.80
   2 !    5.4   0.0    0.0041        19       4      33 ..     129     158 ..     127     203 .. 0.70
   3 !    6.8   0.0    0.0015       6.5      50     108 .]     270     331 ..     227     331 .. 0.67

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.51
    BBS2_Mid 68 kerlWrvksknevva 82
                ++r+Wr  s++++v+
  CCD26398.1 23 EQRYWRQFSSTQLVK 37
                589999999988876 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0041
    BBS2_Mid   4 ladvdgdgeneLvvgsddfeirvfkeeelv 33 
                 +++++ ++++ L+ +sdd  ir+++  ++ 
  CCD26398.1 129 VTKFHSQDNKTLITASDDRVIRLWDISNAY 158
                 567888999*************99866544 PP

  == domain 3  score: 6.8 bits;  conditional E-value: 0.0015
    BBS2_Mid  50 kerfayaleNGtvgvyekker...lWrvksknevvalaaydingdgtkelivgwsnGkldvr 108
                 ++ ++++   G v+v++ +     +   k +++v++ a+   +++g+k+l+ g s+G l +r
  CCD26398.1 270 NQTLIASSLDGHVKVFDPADNftvKFGWKFSSAVLSCALSPGDSQGNKHLVAGLSSGLLAIR 331
                 3446666667999999876542224444555567777777777779***********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      554  (0.0308997); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 3702.04
//
Query:       CCD26399.1  [L=612]
Description: hypothetical protein NDAI_0H02250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-16   58.2  21.5      0.026   15.4   0.0   10.3 11  WD40         WD domain, G-beta repeat
    4.2e-09   36.6   6.5        2.5    8.5   0.0    6.7  6  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    8.1e-09   35.6   0.7      0.003   17.5   0.0    3.9  3  eIF2A        Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.042   13.8   0.0      0.068   13.1   0.0    1.3  1  FAM131       Putative cell signalling
      0.046   13.1   7.0       0.14   11.5   5.4    2.4  3  WD40_like    WD40-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.2   0.00064       2.3       6      37 ..      57      92 ..      52      92 .. 0.73
   2 ?    1.8   0.0      0.14   4.9e+02       9      31 ..     116     138 ..     108     140 .. 0.74
   3 ?    2.8   0.0     0.071   2.6e+02       2      20 ..     150     169 ..     149     187 .. 0.78
   4 !    9.7   0.1   0.00046       1.6      10      38 .]     202     234 ..     192     234 .. 0.74
   5 !    6.2   0.7    0.0058        21      15      38 .]     257     279 ..     246     279 .. 0.82
   6 ?   -2.4   0.0         3   1.1e+04      22      36 ..     310     324 ..     286     325 .. 0.52
   7 !   15.4   0.0   7.4e-06     0.026       3      37 ..     332     363 ..     330     364 .. 0.86
   8 ?   -0.8   0.2      0.95   3.4e+03      13      36 ..     378     400 ..     370     402 .. 0.62
   9 ?    0.3   0.0      0.43   1.6e+03      14      29 ..     495     510 ..     485     518 .. 0.85
  10 ?    5.2   0.0     0.012        43       8      37 ..     531     566 ..     525     567 .. 0.74
  11 !   11.5   0.0   0.00012      0.44       5      37 ..     576     608 ..     569     609 .. 0.79

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00064
                EEESS.SS.EEEEE..EETTSSEEEEEETTSEEEEE CS
        WD40  6 tltGH.ss.vtsla..fspdgawlasGsdDgtvriW 37
                 +tGH ss vt ++    + +++++sG++ g+v +W
  CCD26399.1 57 QFTGHsSSnVTVVKfsPIKGSQYVCSGDESGKVIVW 92
                489**744877776225555566999999*****99 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.14
                 SSSSEEEEEEETTSSEEE.EE.ETT CS
        WD40   9 GHssvtslafspdgawla.sG.sdD 31 
                 G  ++t++a++ +g+ la  G ++D
  CCD26399.1 116 G--PITDIAWDCEGKRLAvVGeGRD 138
                 4..4***********9973455556 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.071
                 EEEEEEESS.SSEEEEEEET CS
        WD40   2 qclrtltGH.ssvtslafsp 20 
                 + l++++GH + ++++ f +
  CCD26399.1 150 NSLGEISGHsQKINAVHFKQ 169
                 678999***555***96655 PP

  == domain 4  score: 9.7 bits;  conditional E-value: 0.00046
                 S...SSEEEEEEETTSSEEE..EEETTSEEEEEE CS
        WD40  10 H...ssvtslafspdgawla..sGsdDgtvriWd 38 
                 H   +++++++fspd+  ++   Gs D+++  +d
  CCD26399.1 202 HdqgKFIRDVKFSPDNGEFVvsVGS-DRKIVCYD 234
                 442344*****99999996522578.***98887 PP

  == domain 5  score: 6.2 bits;  conditional E-value: 0.0058
                 EEEEETTSSEEEEEETTSEEEEEE CS
        WD40  15 slafspdgawlasGsdDgtvriWd 38 
                 +l++ +++++++ +s D ++ +Wd
  CCD26399.1 257 ALDWIDSNKFVT-ASADSKIAVWD 279
                 678889999985.666*******9 PP

  == domain 6  score: -2.4 bits;  conditional E-value: 3
                 SSEEEEEETTSEEEE CS
        WD40  22 gawlasGsdDgtvri 36 
                 ++ ++s s Dgt+ i
  CCD26399.1 310 NNQIVSLSLDGTLNI 324
                 333443355777766 PP

  == domain 7  score: 15.4 bits;  conditional E-value: 7.4e-06
                 EEEEEESS.SSEEEEEEETTSSE..EEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgaw..lasGsdDgtvriW 37 
                  lr+++GH +++t+l      a   l+sGs+Dg+v+ W
  CCD26399.1 332 ILRSIKGHnKGITAL------ATnpLVSGSYDGKVMEW 363
                 58999***999****......6666889*******987 PP

  == domain 8  score: -0.8 bits;  conditional E-value: 0.95
                 EEEEEEETTSSEEEEEETTSEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvri 36 
                 + s+++  +g+  +s s+D t+++
  CCD26399.1 378 IVSIDNVTSGKI-SSVSWDDTLMV 400
                 556744444444.44589999876 PP

  == domain 9  score: 0.3 bits;  conditional E-value: 0.43
                 EEEEEETTSSEEEEEE CS
        WD40  14 tslafspdgawlasGs 29 
                 ++++ s++ ++la+G+
  CCD26399.1 495 SCISISKSERYLAAGD 510
                 59999*******9885 PP

  == domain 10  score: 5.2 bits;  conditional E-value: 0.012
                 ESS.SSEEEEEEETTSSE...........EEEEETTSEEEEE CS
        WD40   8 tGH.ssvtslafspdgaw...........lasGsdDgtvriW 37 
                 + H + +++++      w           +a+Gs D ++ i+
  CCD26399.1 531 SFHtGRINAIS------WrpeeeegeedlVATGSLDTNIIIY 566
                 56855599995......44444448888799********998 PP

  == domain 11  score: 11.5 bits;  conditional E-value: 0.00012
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 + l +H +++++l +++ ++++++G+ D  ++ W
  CCD26399.1 576 KYLNAHkDGINALLWNDANTLVSAGT-DACIKKW 608
                 3356**666************99888.****999 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0022       7.7      38      90 ..     115     168 ..      87     170 .. 0.81
   2 !    7.8   0.0    0.0011       3.9      35      82 ..     202     250 ..     192     263 .. 0.83
   3 ?    2.7   0.6     0.043   1.5e+02      25      86 ..     284     345 ..     258     397 .. 0.73
   4 !    6.2   0.0    0.0035        12      47      87 ..     417     455 ..     409     469 .. 0.83
   5 !    5.5   0.0     0.006        22      39      90 ..     492     543 ..     469     545 .. 0.78
   6 !    8.5   0.0   0.00069       2.5      16      91 ..     512     592 ..     506     593 .. 0.78

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0022
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavays..dgevrlldaesgkvvhslsvksekavtclgWg 90 
                   + ++++aW  +gk Lav+ +  d    +++  +g+ + ++s +s+ +++ ++++
   CCD26399.1 115 AGPITDIAWDCEGKRLAVVGEgrDKFGVFISWDTGNSLGEISGHSQ-KINAVHFK 168
                  5689*************98642244556788899999999988888.48888886 PP

  == domain 2  score: 7.8 bits;  conditional E-value: 0.0011
  ANAPC4_WD40  35 dkedsevrsLaWkpd.gklLavaysdgevrlldaesgkvvhslsvksek 82 
                  +++++ +r+++++pd g++ + + sd ++  +d ++g+ ++ ++ +s++
   CCD26399.1 202 HDQGKFIRDVKFSPDnGEFVVSVGSDRKIVCYDGKTGEFIKYIEDGSHQ 250
                  567889*******964889999999***************999888775 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.043
  ANAPC4_WD40  25 ngqrvwtl.eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  + ++vwt+  +d+ + +  ++    +++ ++    dg+++++++ +  +++s++ +++  +t 
   CCD26399.1 284 KCEQVWTVtGSDSLKTQQVGVVVATKNNQIVSLSLDGTLNIFQMGQDSILRSIKGHNKG-ITA 345
                  45778888533333333334555556666677777888888888888888888887774.554 PP

  == domain 4  score: 6.2 bits;  conditional E-value: 0.0035
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  ++d+ + av++s++ + ll++ +g +++sl+ k+   v+ +
   CCD26399.1 417 SNDDGMTAVVTSENMLLLLNSVTGAILQSLQLKTP--VAAI 455
                  6788899************************9988..4444 PP

  == domain 5  score: 5.5 bits;  conditional E-value: 0.006
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  s+ ++++ +++++ La +   g++ l+d e+ ++  s    ++ +++ ++W 
   CCD26399.1 492 STPSCISISKSERYLAAGDVMGKIILFDLETRDIKTSRWSFHTGRINAISWR 543
                  555678888999*******************999766544444479999996 PP

  == domain 6  score: 8.5 bits;  conditional E-value: 0.00069
  ANAPC4_WD40  16 dgellvfRlngqrvwtleedkedsevrsLaWkpdgk.....lLavaysdgevrlldaes.gkvvhslsvksekavtclgWge 91 
                   g++++f l+ + + t   + + +++++++W+p+++     l a +  d+++ ++++++  ++++ l+++++  ++ l W++
   CCD26399.1 512 MGKIILFDLETRDIKTSRWSFHTGRINAISWRPEEEegeedLVATGSLDTNIIIYSMKKpMRTIKYLNAHKD-GINALLWND 592
                  577888888888888888888999********9753333339**************9983467888888888.6*9999986 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0     0.002       7.1      59     109 ..     115     168 ..     102     180 .. 0.65
   2 !    7.4   0.2     0.001       3.7      57     133 ..     203     281 ..     181     328 .. 0.64
   3 !   17.5   0.0   8.4e-07     0.003      36     116 ..     512     598 ..     478     602 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.002
                 SS.EEEEEE-TTSS-EEEEESSSSCEEEEEEC.SCEEEEEE..EEES--EEEE- CS
       eIF2A  59 egpihdvaWspkskefaviyGkmpakvslfdl.kvkviskl..eeqkrNtiffs 109
                 +gpi d+aW+ ++k++av+    ++  ++ +  +++ + ++  ++qk N++ f+
  CCD26399.1 115 AGPITDIAWDCEGKRLAVVGEGRDKFGVFISWdTGNSLGEIsgHSQKINAVHFK 168
                 69***************9954444433333332355544441135566666665 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.001
                 ESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.CEEEEEEEE..ES--....EEEE-TTSSEEEEE-TTSSS-EEEEEETT CS
       eIF2A  57 kkegpihdvaWspkskefaviyGkmpakvslfdlk.vkvisklee..qkrN....tiffspkgklvllaGfgnlaGeleiwdvk 133
                 ++   i dv+ sp++ ef+v  G +++k++ +d k ++ i+ +e   ++ N    ++ + +++k+v  +       ++++wdv+
  CCD26399.1 203 DQGKFIRDVKFSPDNGEFVVSVG-SDRKIVCYDGKtGEFIKYIEDgsHQINggnfALDWIDSNKFVTAS----ADSKIAVWDVT 281
                 44445**************9999.5899*****985444444433113333222346666676666543....34456777776 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 8.4e-07
                 EEEEEEEESSSTT--EEECCEESSS.EEEEEE-TT...SS-EEEEESSSSCEEEEEECS..CEEEEEEE..EES--EEEE-TTSSEEE CS
       eIF2A  36 ygetelyliklkkkksevvelkkegpihdvaWspk...skefaviyGkmpakvslfdlk..vkviskle..eqkrNtiffspkgklvl 116
                 +g+  l+ ++++++k+++ +  ++g i +++W p+   ++e +v  G  + ++ ++++k  ++ i+ l+  ++  N++++++ ++lv 
  CCD26399.1 512 MGKIILFDLETRDIKTSRWSF-HTGRINAISWRPEeeeGEEDLVATGSLDTNIIIYSMKkpMRTIKYLNahKDGINALLWNDANTLVS 598
                 6777899999999*****999.6789******8752226789****************87866666665105568*******999985 PP

>> FAM131  Putative cell signalling
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   1.9e-05     0.068     156     252 ..     406     510 ..     355     557 .. 0.71

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.9e-05
      FAM131 156 qslglrqgsvesesdssqtvgspdtlcsslcsLiedgll........aspaelaakllgqggee.llaklqrppsresafrslgkleaedslysvslse 245
                 ++ + +  ++ s+ d++++v  ++ +   l s+    +l         ++  l++k+++ g+ee  l ++ + +   s f+  +kl+++ s+ s+s+se
  CCD26399.1 406 YKFEHQPKVSTSNDDGMTAVVTSENMLLLLNSVT-GAILqslqlktpVAAIGLSSKIVSVGYEEtNLIEVFDISELSSCFQLNSKLTSTPSCISISKSE 503
                 3444444455666778877777777655555553.33334444554444455************87888877777799********************* PP

      FAM131 246 sllspae 252
                  +l++++
  CCD26399.1 504 RYLAAGD 510
                 ***7654 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   5.4   3.9e-05      0.14      11     235 ..     217     489 ..     208     520 .. 0.69
   2 ?   -0.8   0.0       0.2   7.3e+02       6      42 ..     497     533 ..     492     576 .. 0.78
   3 ?   -1.8   0.0      0.44   1.6e+03     207     243 ..     552     589 ..     542     605 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.9e-05
   WD40_like  11 kgslilyGgkddkctvlkleslesvsivesfedSvifvkl....ldddlilvvtlDGtillslleneeevenekieedistvkviddklliGtnkGsiy 105
                 +g++++  g d k+  ++ +++e +  +e+ +  +   ++    +d ++++ ++ D +i   +++ ++  e+          k+ +  +++ t++ +i 
  CCD26399.1 217 NGEFVVSVGSDRKIVCYDGKTGEFIKYIEDGSHQINGGNFaldwIDSNKFVTASADSKIAVWDVTTSK-CEQVWTVTGSDSLKTQQVGVVVATKNNQIV 314
                 567777778888999999999999999999888886555433338999***********999999998.3333333344456788889*********** PP

   WD40_like 106 vfskdlqleevllgqsseIkeikie..............................................nnkiysLs.esafivfdlfsqnieykis 157
                  +s d +l++  +gq s +++ik +                                              ++ki s s +++++v d++       ++
  CCD26399.1 315 SLSLDGTLNIFQMGQDSILRSIKGHnkgitalatnplvsgsydgkvmewetipkrlhdlhrnlivsidnvtSGKISSVSwDDTLMVNDEIK------YK 407
                 *****999*****************777777777777777777777777777777777777777777777777777777334455554443......33 PP

   WD40_like 158 vkdiktfeiienkdilligtegeililkk...nvilqkidvegkPecillvddylivGgs.fkyllliNiklnvntfklrle 235
                 ++    +++ ++  + ++ t++++l+l +     ilq +++++   +i l+ +++ vG + ++ + +  i   +++f+l+ +
  CCD26399.1 408 FEHQPKVSTSNDDGMTAVVTSENMLLLLNsvtGAILQSLQLKTPVAAIGLSSKIVSVGYEeTNLIEVFDISELSSCFQLNSK 489
                 4444444444555555555555555554411145777777777445555566666666432556667777777777777665 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.2
   WD40_like   6 idiskkgslilyGgkddkctvlkleslesvsivesfe 42 
                 i isk   +++ G    k+ +++le+ +++++  sf+
  CCD26399.1 497 ISISKSERYLAAGDVMGKIILFDLETRDIKTSRWSFH 533
                 6788888888888888888888888888888776665 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.44
   WD40_like 207 dylivGgsfkyllliNiklnvntfklrl.evegiskik 243
                 d++  G   + +++  +k +++t k+   + +gi+ + 
  CCD26399.1 552 DLVATGSLDTNIIIYSMKKPMRTIKYLNaHKDGINALL 589
                 55556666667777788888888775433667777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       475  (0.0264934); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.60u 0.23s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 4470.85
//
Query:       CCD26400.1  [L=545]
Description: hypothetical protein NDAI_0H02260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-50  169.9   0.1    7.6e-50  168.9   0.1    1.6  1  CRC_subunit  Chromatin remodelling complex Rsc7/Swp82 subunit


Domain annotation for each model (and alignments):
>> CRC_subunit  Chromatin remodelling complex Rsc7/Swp82 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9   0.1   4.2e-54   7.6e-50       2     135 .]     230     361 ..     229     361 .. 0.98

  Alignments for each domain:
  == domain 1  score: 168.9 bits;  conditional E-value: 4.2e-54
  CRC_subunit   2 ddeykltkedpegekkidknGkLlggreyrvktFtleeregkklyvLstdlarllgfrdsylffkknpqllkllatqeekedLiergllpsslksrqi 99 
                  ++ey l+ +dpege+ki++nG+Llggr+++++tFtl++r g+++++L+t++ar +gfrdsylff+ n++++k+++ q++k+dLi+rgl+p+s+++rqi
   CCD26400.1 230 NEEYALP-DDPEGEAKITRNGDLLGGRQFLIRTFTLTSR-GERKFMLATECARSVGFRDSYLFFQYNKSIYKFVLLQSDKNDLIDRGLIPYSYRNRQI 325
                  68999**.*****************************99.********************************************************** PP

  CRC_subunit 100 klvtarsvFlefGariivkGkrvvDDYyeekakeqg 135
                  +lv+ar vF+ fGa+ii +G++++DDYy +k++++g
   CCD26400.1 326 ALVSARGVFKVFGAKIIRNGRNITDDYYSTKLRQEG 361
                  *******************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1463  (0.0815996); expected 358.6 (0.02)
Passed bias filter:                      528  (0.0294495); expected 358.6 (0.02)
Passed Vit filter:                       132  (0.00736237); expected 17.9 (0.001)
Passed Fwd filter:                        49  (0.002733); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.16u 0.35s 00:00:01.50 Elapsed: 00:00:00.49
# Mc/sec: 3322.77
//
Query:       CCD26401.1  [L=231]
Description: hypothetical protein NDAI_0H02270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-50  171.0   0.0    2.8e-50  170.8   0.0    1.0  1  NAD_binding_10   NAD(P)H-binding
    1.1e-11   44.7   0.2    2.1e-11   43.8   0.2    1.4  1  NmrA             NmrA-like family
    1.3e-09   37.5   0.7    1.9e-09   37.0   0.7    1.2  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
    8.1e-06   25.5   0.2    2.2e-05   24.0   0.1    1.7  1  Epimerase        NAD dependent epimerase/dehydratase family
    8.7e-06   26.2   0.1    1.5e-05   25.4   0.1    1.3  1  Semialdhyde_dh   Semialdehyde dehydrogenase, NAD binding doma
    2.4e-05   24.4   0.1    4.1e-05   23.7   0.1    1.4  1  DapB_N           Dihydrodipicolinate reductase, N-terminus
    0.00027   21.2   0.2    0.00049   20.4   0.2    1.4  1  Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding doma
      0.001   19.2   0.3     0.0014   18.7   0.3    1.3  1  Ldh_1_N          lactate/malate dehydrogenase, NAD binding do
     0.0054   17.3   1.1     0.0084   16.7   0.2    1.8  2  F420_oxidored    NADP oxidoreductase coenzyme F420-dependent
  ------ inclusion threshold ------
      0.032   15.1   0.1       0.06   14.2   0.1    1.4  1  GFO_IDH_MocA     Oxidoreductase family, NAD-binding Rossmann 


Domain annotation for each model (and alignments):
>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.8   0.0   1.6e-53   2.8e-50       1     184 []      12     206 ..      12     206 .. 0.89

  Alignments for each domain:
  == domain 1  score: 170.8 bits;  conditional E-value: 1.6e-53
                     TTTSHHHHHHHHHHHHC-.T-EE.EEEETTHHHCHHHHCT..TTCEEEE--TT-CCHHHHHHTT-SEEEES---TCC........HHHHHHHHHH CS
  NAD_binding_10   1 GAtGkvGrllvkellarg.ghev.talvRnpeklaeleae..eglevvegdvtdvedlaealkgadaVvsalggggk........deegaknivd 83 
                     GA+GkvGrl++++l +++ +++v  a+vRn+e+++ +++e    +++++++ +++++la+alkg+daV++++g+gg+        d +g++++v+
      CCD26401.1  12 GANGKVGRLIIEKLKEDRkHFDVpLAIVRNKEQVDYFKNEvkIDASLTSIEHSSAKELANALKGCDAVIFTAGAGGTsieriftvDLDGCVKTVE 106
                     9*****************999984568********999762245568999999*********************999988888777777****** PP

                     HHHHCT--EEEEEEETTTTSGCGCHHHHHHHHCCHHHHHHHHHHHHHHHHSSSEEEEEEE-CEE-ST.--SEEEEETTSS-..---EEEHHHHHH CS
  NAD_binding_10  84 aakeagvkRfvlvsaigvgdevpgefgewnkellkaylaakraaeellrasgldwTivrpggLtdep.ttkyrvvekgepf..kggsisradVAd 175
                     a++  g+kR+++vsa+++++    +  +wn + l++y++akraa++ +r+s+ld+Tiv+pg+L+ ++ t+k + +ek e+   +++ i+radVA 
      CCD26401.1 107 ACESVGIKRLIVVSAVKAEH----RDFWWNIQGLRNYYIAKRAADHDVRQSKLDYTIVQPGWLKSGEpTGKLQPLEKFEEKaeGSYAIERADVAS 197
                     ******************95....4569999********************************998659999999885554114469******** PP

                     HHHHHCTXG CS
  NAD_binding_10 176 vlvavlddp 184
                     +++++l +p
      CCD26401.1 198 FIIQALLHP 206
                     ******987 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.2   1.2e-14   2.1e-11       1     218 [.       8     227 ..       8     231 .] 0.82

  Alignments for each domain:
  == domain 1  score: 43.8 bits;  conditional E-value: 1.2e-14
                 EEESSTTSHHHHHHHHHHHH..HT-EE.EEEES-S-S.HHHHHHHHSTTEEEES-TT-HHHHHHHHTT-SEEEE---GG........S-HHHHHHHHHH CS
        NmrA   1 IlviGaTGrqGksvvrallk..aghkv.ralvRdtks.elakslkeaGvelvkgdlddkeslvealkgvdvvfsvtgfy........skeiedgkklvd 87 
                 +++iGa G+ G+ +++ l +  + ++v  a+vR+ ++ +  k+  +  + l + +  + + l++alkg d+v+++ g+            ++  +k v+
  CCD26401.1   8 VAIIGANGKVGRLIIEKLKEdrKHFDVpLAIVRNKEQvDYFKNEVKIDASLTSIEHSSAKELANALKGCDAVIFTAGAGgtsierifTVDLDGCVKTVE 106
                 79*****************98777888559****955145566667789999************************977888888888889999***** PP

                 HHHHHS-SEEEEEE---GG.GT..SSS-.--TTTHHHHHHHHHHHHCTS-EEEEEE-EEGGG-BSSS-SS-BEEE-TTS.-EEEEESS-TTS-EE-HHH CS
        NmrA  88 AakeaGvkhfiySslgddndrs.naeep.avphfdsKaeieeyvralgipytfvyagffmenflsllaqlkvgdtappedkvtllgpgnpkavlldaee 184
                 A    G+k++i  s ++++ r    ++   ++ + +K    + vr++ + yt+v +g        +  +  +g+++p e k++ +++g+    + ++ +
  CCD26401.1 107 ACESVGIKRLIVVSAVKAEHRDfWWNIQgLRNYYIAKRAADHDVRQSKLDYTIVQPGWLK-----SGEP--TGKLQPLE-KFEEKAEGS----YAIERA 193
                 *********99877776664431222221467899*********************9643.....3444..67888887.888888888....45599* PP

                 HHHHHHHHHHHHHHHHTTEEEEE-SEEE-HHHHH CS
        NmrA 185 DiGafvikilkdprklkgkriklagntlsgneiv 218
                 D+++f+i++l +p+k+  k i+la+     +e +
  CCD26401.1 194 DVASFIIQALLHPEKTARKTIELANGNQPIDEFI 227
                 ************************9876666655 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.7     1e-12   1.9e-09       1     118 [.       9     123 ..       9     129 .. 0.87

  Alignments for each domain:
  == domain 1  score: 37.0 bits;  conditional E-value: 1e-12
   3Beta_HSD   1 vvtGgaGFlGralvkeLvrleelkevrvlDlrespelleelskvnvkk.viegDvtdkdkleealegvdvvihlaslvdvagkltedeimkvnvkGTrn 98 
                 +++G+ G +Gr ++++L +  +  +v  + +r+++++    ++v+++  +      ++++l +al+g d+vi++a++      ++ ++i +v + G  +
  CCD26401.1   9 AIIGANGKVGRLIIEKLKEDRKHFDVPLAIVRNKEQVDYFKNEVKIDAsLTSIEHSSAKELANALKGCDAVIFTAGAGG----TSIERIFTVDLDGCVK 103
                 589**************99999999*99999999999444455566556778888999****************99754....66799*********** PP

   3Beta_HSD  99 vleacvkagvrvlvYtSsae 118
                  +eac + g+++l+ +S+++
  CCD26401.1 104 TVEACESVGIKRLIVVSAVK 123
                 *****************986 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   1.2e-08   2.2e-05       2     160 ..       9     157 ..       8     176 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 1.2e-08
                 EEETTTSHHHHHHHHHHHHCT....SEEEEEES-STTTTCHHCHHC..EEEE--TT-HHHHHHHHHHHT-SEEEE--S---HHHHHHSHHHHHHHHTHH CS
   Epimerase   2 lVtGatGfiGsalvkallekg....yevigldrlssasntarledl..elveldltdrsalerlfkeeqpdavihlAavggvaassedpadfieknlqg 94 
                  ++Ga+G +G+ ++++l+e      + +  + ++++ + ++++ ++  +l+ ++   +++l++++k  ++davi  A+ gg   s+   ++++  +l g
  CCD26401.1   9 AIIGANGKVGRLIIEKLKEDRkhfdVPLAIVRNKEQVDYFKNEVKIdaSLTSIEHSSAKELANALK--GCDAVIFTAGAGGT--SI---ERIFTVDLDG 100
                 69****************99887433344444444444444444448899999999999*******..********776654..33...5588899*** PP

                 HHHHHHHHHHHTCTEEEEEEEGGGGTSCSSSSBSTCSTTS----SSHHHHHHHHHHHHHHHHHHHH CS
   Epimerase  95 tlnlleaarkagvkrllflsSsevYGkdaeqpkeettltgplkpnspYaaaKlageklveayaaqy 160
                  ++ +ea+   g+krl+ +s +     +ae  ++      +++  + Y +aK+a+++ v++ + +y
  CCD26401.1 101 CVKTVEACESVGIKRLIVVSAV-----KAEH-RDFWW---NIQGLRNYYIAKRAADHDVRQSKLDY 157
                 ********************93.....2331.34444...66888889999999999998766655 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   8.3e-09   1.5e-05       1      77 [.       7      86 ..       7      94 .. 0.81

  Alignments for each domain:
  == domain 1  score: 25.4 bits;  conditional E-value: 8.3e-09
                    EEEEETTTSHHHHHHHHHHHC.TSSEEEEEEEESTTTTTSBHHHHSG...GGTTTECEBEEEGGGGGCTT-SEEEE-SCHH CS
  Semialdhyde_dh  1 kvaivGatGyvGqellrlLee.hpevelvvllsssrsaGkklaeavk...aleegkdlkvedvdeeelkevdivflalpag 77
                    kvai+Ga G vG+ +++ L+e  +++++  ++ +++++   +++ vk   +l++++  + ++  +++lk++d v++ ++ag
      CCD26401.1  7 KVAIIGANGKVGRLIIEKLKEdRKHFDVPLAIVRNKEQVDYFKNEVKidaSLTSIEHSSAKE-LANALKGCDAVIFTAGAG 86
                    7********************9999***9999999988888888888554444444444444.66778******9999887 PP

>> DapB_N  Dihydrodipicolinate reductase, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.1   2.3e-08   4.1e-05       2      72 ..       7      80 ..       6      95 .. 0.78

  Alignments for each domain:
  == domain 1  score: 23.7 bits;  conditional E-value: 2.3e-08
                EEEEETTTSHHHHHHHHHHHH.STTEEEEEEEETTC..STTTTTBHHHHSSSS--S-BEBSSHHHHHHH-SEEE CS
      DapB_N  2 kvavvGasGrmGkevvkavee.aedlelvaavdrke..selegkdagellglgklgvavtddleevlekadvli 72
                kva++Ga+G++G+ +++ ++e ++++ +  a+ r++   ++ ++++   ++l++++    ++l+++l+ +d +i
  CCD26401.1  7 KVAIIGANGKVGRLIIEKLKEdRKHFDVPLAIVRNKeqVDYFKNEVKIDASLTSIEHSSAKELANALKGCDAVI 80
                8******************9945889999999999932334455565666666777777788888888888887 PP

>> Sacchrp_dh_NADP  Saccharopine dehydrogenase NADP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   2.7e-07   0.00049       1      74 [.       8      80 ..       8      87 .. 0.88

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 2.7e-07
                     EEEE--.SHHHHHHHHHHHCTCCT-GEEEEEESSHHHHHHHHCHHTTTCEEEEE--TTTHHHHHHHHHTTSSEEE CS
  Sacchrp_dh_NADP  1 vliiGa.GsvGqavaellarhfdvdaeitvadrskeklealaakalgvrfeaialdaenyeavLaallkegdlvv 74
                     v iiGa G+vG+ ++e+l++  ++++    + r+ke+++  ++ + +++++ +++  +  ++ La +lk+ d+v+
       CCD26401.1  8 VAIIGAnGKVGRLIIEKLKEDRKHFDVPLAIVRNKEQVDYFKN-EVKIDASLTSIEHSSAKE-LANALKGCDAVI 80
                     689***************9988888867777889999887765.589999************.***********9 PP

>> Ldh_1_N  lactate/malate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.3     8e-07    0.0014       2      79 ..       7      85 ..       6     119 .. 0.81

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 8e-07
                EEEEETTTSHHHHHHHHHHHHTTSSSEEEEE-SSHH.HHHHHHHHHHHCHCCSTS-EEEEESSGGGGTTESEEEE--S- CS
     Ldh_1_N  2 kvavvGaaGgiGqslalllankkladelaLlDiake.kleGvaldlshistflsvkvkvsekeeealkdadvvvitagv 79
                kva++Ga G++G  +  +l++     ++ L  ++++ +++    +++  +  +s++ ++ ++  +alk++d v+ tag+
  CCD26401.1  7 KVAIIGANGKVGRLIIEKLKEDRKHFDVPLAIVRNKeQVDYFKNEVKIDASLTSIEHSSAKELANALKGCDAVIFTAGA 85
                9********************96555566666655525555556666555556677777779****************7 PP

>> F420_oxidored  NADP oxidoreductase coenzyme F420-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   4.7e-06    0.0084       1      67 [.       7      81 ..       7      85 .. 0.75
   2 ?   -3.5   0.0       9.2   1.7e+04      64      71 ..     117     124 ..     102     127 .. 0.54

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 4.7e-06
                   EEEEETT.SHHHHHHHHHHHHTTS-GGCEEEEEESSCCCHHHHHHHHC.....-EEECECHHH...HHHH-SEEEE CS
  F420_oxidored  1 kigiiGa.Gnmgealasgllaagaqpheivvansrnpekaeelaeelg.....vkvtavdnee...aaeeadvvvl 67
                   k++iiGa G++g+ ++++l +  ++  ++ +a  rn+e+++++++e++      ++++++++e   a++ +d v++
     CCD26401.1  7 KVAIIGAnGKVGRLIIEKLKED-RKHFDVPLAIVRNKEQVDYFKNEVKidaslTSIEHSSAKElanALKGCDAVIF 81
                   79***655*********99887.59999********************7777744444444440005557777765 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 9.2
                    EEEE-S-H CS
  F420_oxidored  64 vvvlavkp 71 
                    +vv avk 
     CCD26401.1 117 IVVSAVKA 124
                    45555555 PP

>> GFO_IDH_MocA  Oxidoreductase family, NAD-binding Rossmann fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.2   0.1   3.3e-05      0.06       2      66 ..       7      79 ..       6      87 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 3.3e-05
                  EEEEETT.SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTHE.EESSHHHHHTCT......TESEE CS
  GFO_IDH_MocA  2 rvaiiGa.Gkigskhlrplnesqrleevvalldpdaeraeavaesfgve.aysdleelladp......eidav 66
                  +vaiiGa Gk+g+  +++l+e +++ +v  ++ +++e+ + + ++ +++ + +++e+ +a++       +dav
    CCD26401.1  7 KVAIIGAnGKVGRLIIEKLKEDRKHFDVPLAIVRNKEQVDYFKNEVKIDaSLTSIEHSSAKElanalkGCDAV 79
                  79****************************************9999999755664444444422212346666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       517  (0.028836); expected 358.6 (0.02)
Passed bias filter:                      442  (0.0246528); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1786.49
//
Query:       CCD26402.1  [L=843]
Description: hypothetical protein NDAI_0H02280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   1.6e-201  671.3  93.2   2.6e-200  667.3  93.2    2.4  1  BAF1_ABF1    BAF1 / ABF1 chromatin reorganising factor
  ------ inclusion threshold ------
      0.057   13.4   0.6       0.13   12.3   0.6    1.5  1  DBD_Tnp_Mut  MuDR family transposase


Domain annotation for each model (and alignments):
>> BAF1_ABF1  BAF1 / ABF1 chromatin reorganising factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  667.3  93.2  2.9e-204  2.6e-200       1     563 []       5     843 .]       5     843 .] 0.92

  Alignments for each domain:
  == domain 1  score: 667.3 bits;  conditional E-value: 2.9e-204
   BAF1_ABF1   1 nlYEYkHpiiNkeLasgedegsarkFptLesWYnvvndYEfqaRCPiiLKNSHrNKHFTFACHLKeCpFKvLlSYsgnnkdaevessesnenae..... 94 
                 +lYEY+HpiiN++L++g d++sa+kFptLesWYn+vndYEfq+RCPiiLKNSH+NKHFTFACHLKeC+FK+LlSY+g+++d++v++s sn+ a      
  CCD26402.1   5 HLYEYRHPIINNNLLPGGDPNSAPKFPTLESWYNAVNDYEFQSRCPIILKNSHKNKHFTFACHLKECHFKILLSYCGHQRDDNVIRSPSNTIAGlndng 103
                 69*****************************************************************************************99999*** PP

   BAF1_ABF1  95 .......................etdkenkkekteeseeatkasaeaeteslkkdeseenketqkkkeada....adedddvsaaiaaAVaava..... 161
                                        +++++  +ekte++ee++k+sae+et++l + ++++nk+tq ++++d+    +  +++v++++aaAVa++a     
  CCD26402.1 104 sidtnsnnnsnihssidhhndnqNIASSLLTEKTENIEEIHKGSAEPETDTLLNVNNNHNKNTQPSEAKDDesrkYIPNAEVDVELAAAVAKTAlessn 202
                 *********************9999999***************************************99997887899********************* PP

   BAF1_ABF1 162 .......................dsknakeekkeekakkeedaeentnknennd.....asisqkknslsedaledsqrsqssketvrGPFvVTKiepY 232
                                        d++ ++e+k+e++a+k+ da++ntn n+n++     ++isq +n++s++a++dsqrsq+ske++ GPFvVTK+e+Y
  CCD26402.1 203 vnadvnstelnksngdfpsndstDNRLTTENKNETTANKNGDANNNTNVNDNDNnnnsaNIISQGFNPFSNEAIMDSQRSQRSKEQILGPFVVTKMEIY 301
                 ***********************999****************999999998888889999*************************************** PP

   BAF1_ABF1 233 HnHpLesNLsLdkFvLTKiPriLqndLnFDeiLeelynee.dntvaKFrVsqyVeeSgildilkerYgLtdedldKkllsqiaRrvTTYKARFVLkkKk 330
                 H+HpLe+NL+Ld+FvLTKiPriLqndL+FD++Leely+++ +n+v+KFrVsq+VeeSgi+di+k+rYgL++e+++K+++s+iaRrvTTYKARFVLk+K+
  CCD26402.1 302 HTHPLEANLTLDQFVLTKIPRILQNDLDFDQTLEELYSSGnHNEVTKFRVSQFVEESGIVDIIKARYGLAHEYFTKRYCSLIARRVTTYKARFVLKMKR 400
                 ***************************************99********************************************************** PP

   BAF1_ABF1 331 nGeyk.............................................vssanknenkdns.................qekkeeslesteaaliske 367
                 nG+y+                                             ++++n+n nkdns                 q++++e+++st++a+i++e
  CCD26402.1 401 NGTYNmdpntvvkhrnsanntivtsiysnptqrllntgqnraintivrnnNNNSNNNPNKDNSlpvsvtdvinsgnqdkgQQQQQEQRDSTTPADITSE 499
                 *******************************************999664333333344444449999**********9999****************** PP

   BAF1_ABF1 368 ektrpssals...iesnskaasskkskskkekeinanddkeelseeskdkeeetn............................................ 419
                 + +rp++ l+   i+s+sk+a++++ ++k+ +ei++++dke+++e+++dk+++tn                                            
  CCD26402.1 500 RGPRPNDLLHhdiINSSSKHANMDDVSNKNITEITTSNDKEKSPEQVVDKNRDTNkettatianvnetrdnrnnnnnnnidneleslttqeernierlk 598
                 *******9998999****************************************9******************************************** PP

   BAF1_ABF1 420 ........sereerqkeleseakeaqaaAqaainessslkrtlaeeddnenee...........rkrsrnnkksdlvklnaknslvedesalesledve 499
                         ser++r+++l++ ++ea+++Aq+aines slkrtl e  d+ n +           +kr++ n+++ l++++a+++++ed+sal++le+++
  CCD26402.1 599 qyqressqSERQYRYPTLADIEMEAVTSAQHAINESLSLKRTLGE--DDVNVVghaqnagiedrNKRHKPNTVA-LTTAGATTTSLEDHSALSTLEELP 694
                 ******9999999******************************55..4444444589999999999***99998.999********************* PP

   BAF1_ABF1 500 ddklPhdvAEqLrLLSSHfKdVe...........qeaqnedddkdeeaekvdae..................................aat........ 545
                 ddklPhdvAEqLrLLSSHfKdV+           +e +++d++++ee+e+vda+                                  + t        
  CCD26402.1 695 DDKLPHDVAEQLRLLSSHFKDVDnnhplnhgnndDEGHDHDNNDEEEVEDVDADlvrvinaaaaaaaaahggddvslehitaepsphlT-Ttttnttnt 792
                 ***********************999999999888888888888888888888866666666666666666666666655555555550.055566666 PP

   BAF1_ABF1 546 .............................dkevdi.......sdENiqPELRgq 563
                                              +   ++       ++ENiqPELR+q
  CCD26402.1 793 tttttntternllvidsytkntsethddiN---KSkeshaldENENIQPELRDQ 843
                 666777777788888888887887775441...224557789**********98 PP

>> DBD_Tnp_Mut  MuDR family transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.6   1.4e-05      0.13       9      57 ..      29      78 ..      26      84 .. 0.94

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 1.4e-05
  DBD_Tnp_Mut  9 eFksleelrkalkkyaIahhrefrvvksd.ksrytvrCekegCpWrvhas 57
                 +F+ le+  +a++ y  + + ++ +++s  ++ +t  C  ++C +++ +s
   CCD26402.1 29 KFPTLESWYNAVNDYEFQSRCPIILKNSHkNKHFTFACHLKECHFKILLS 78
                 7***************************98899*************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2527  (0.140945); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.98u 0.30s 00:00:01.28 Elapsed: 00:00:00.48
# Mc/sec: 5293.31
//
Query:       CCD26403.1  [L=384]
Description: hypothetical protein NDAI_0H02290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-38  131.6   0.0    2.7e-38  130.5   0.0    1.6  1  XPG_N         XPG N-terminal domain
    2.9e-30  104.5   0.0    7.4e-30  103.2   0.0    1.7  1  XPG_I         XPG I-region
    1.1e-06   29.2   0.8    1.3e-05   25.7   0.0    2.7  3  5_3_exonuc    5'-3' exonuclease, C-terminal SAM fold
  ------ inclusion threshold ------
      0.015   15.2   0.1       0.11   12.3   0.1    2.2  1  5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like do
      0.031   14.9   0.2        0.2   12.3   0.0    2.5  2  HHH_5         Helix-hairpin-helix domain
       0.12   12.5   0.0       0.37   10.9   0.0    1.8  1  HHH_2         Helix-hairpin-helix motif


Domain annotation for each model (and alignments):
>> XPG_N  XPG N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.0     9e-42   2.7e-38       1     100 [.       1     107 [.       1     108 [. 0.99

  Alignments for each domain:
  == domain 1  score: 130.5 bits;  conditional E-value: 9e-42
                 X--TTHHHHHHHH-..GEEEEEGGGGTTEEEEEEHHHHHHHHHHHSE.ETTEE-BS.....-HHHHHHHHHHHHHHHTTEEEEEEE--S--GGGHHHHH CS
       XPG_N   1 MGikgLlkllkeva..airsvsiealegkklaiDaslwlyrfliavreqlgnalen.....tshlmglfsrllrlldfgikPifVFdgkapdlkkeele 92 
                 MGikgL ++++e a  air+++i+a++g+k+aiDas++ly+fliavr+q+g +l+n     tshlmg+f+r+lr++d+gikP++VFdgk+p lk++el 
  CCD26403.1   1 MGIKGLTAIISENAplAIRKSDIKAFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNdagetTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPVLKSHELD 99 
                 *************************************************************************************************** PP

                 HHHHHHHH CS
       XPG_N  93 krserrqe 100
                 kr +rr+e
  CCD26403.1 100 KRIARRAE 107
                 ******97 PP

>> XPG_I  XPG I-region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   2.5e-33   7.4e-30       2      94 .]     145     231 ..     144     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: 103.2 bits;  conditional E-value: 2.5e-33
                 HHT--EEE-SS-HHHHHHHHHHTTSSSEEE-SSSHHHHTT-SEEEESTT.ECECTT..EEECEEEEEEHHHHHHHHT--HHHHHHHHHHHCET CS
       XPG_I   2 lmgipyvvApgEAEAqcayLqkkglvdaviseDsDlllFGapkvlrnlskkkskkkkekekkkvevidlekvlkelgltreqlidlaillgcD 94 
                 lmgipyv+ApgEAEAqca+L+kkg+v+a++seD+D+l++ +p++lr+l+  +s++k    k+++++i++e+vl+ l+lt eq+idl i+lgcD
  CCD26403.1 145 LMGIPYVNAPGEAEAQCAELAKKGKVYAAASEDMDTLCYRTPYLLRHLT--FSEAK----KEPIQEINTEQVLQGLELTLEQFIDLGIMLGCD 231
                 8***********************************************9..88888....889*****************************9 PP

>> 5_3_exonuc  5'-3' exonuclease, C-terminal SAM fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.2      0.27     8e+02      55      79 ..     111     134 ..      92     155 .. 0.57
   2 !   25.7   0.0   4.5e-09   1.3e-05       4      52 ..     219     267 ..     216     286 .. 0.77
   3 ?   -2.7   0.1       3.3   9.7e+03      54      72 ..     351     369 ..     334     374 .. 0.68

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.27
  5_3_exonuc  55 klkekLeenkeearlskkLatiktd 79 
                 k  ++ ++++e+++  ++L+++ ++
  CCD26403.1 111 KF-AEATDQAEKIKQERRLVKVSKE 134
                 22.2223334445556666666554 PP

  == domain 2  score: 25.7 bits;  conditional E-value: 4.5e-09
  5_3_exonuc   4 eqiidlkaLvGDssDnipGvpgiGektAakLlkeygsleeilenld..elk 52 
                 eq+idl  + G   D  + ++giG+ tA kL+ke+gsle+i+e ++  e +
  CCD26403.1 219 EQFIDLGIMLG--CDYCENIRGIGPVTAFKLIKEHGSLEKIIEFIEsdENT 267
                 67777777777..577788899*********************98732222 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.3
  5_3_exonuc  54 kklkekLeenkeearlskk 72 
                 +k+ke+L+ ++ +a+ +kk
  CCD26403.1 351 PKTKEQLASAAAKAKAAKK 369
                 4566777777777666654 PP

>> 5_3_exonuc_N  5'-3' exonuclease, N-terminal resolvase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.8e-05      0.11       4      98 ..      32     131 ..      29     212 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3.8e-05
  5_3_exonuc_N   4 LiDgsslifRayyal.......lttsdgeptnavygflnmllklleeekpthlavvfDakkktfRhelypeYKanReetpeelkeqlplikevleal 93 
                    iD+s  +++   a+       lt+  ge t+ ++g++   l+++++    + + vfD k++  +++ +++  a R+et+++++e  +  +++ ++ 
    CCD26403.1  32 AIDASMSLYQFLIAVrqqdggqLTNDAGETTSHLMGMFYRTLRMIDNGI--KPCYVFDGKPPVLKSHELDKRIARRAETEKKFAEATDQAEKIKQER 126
                   58888888888888788899999999**********9999999999743..46999**998899988888877777666666666666666555444 PP

  5_3_exonuc_N  94 gikvl 98 
                   ++  +
    CCD26403.1 127 RLVKV 131
                   22222 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2         4   1.2e+04      46      56 ..     117     127 ..     115     127 .. 0.83
   2 ?   12.3   0.0   6.7e-05       0.2       6      31 ..     235     259 ..     232     270 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 4
                 HHHHHHHHHHH CS
       HHH_5  46 ktAeriilelk 56 
                 ++Ae+i++e +
  CCD26403.1 117 DQAEKIKQERR 127
                 689***99965 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 6.7e-05
                 TSTT--HHHHHHHHTTT--SHHHHHH CS
       HHH_5   6 svsGiGpktAlallsaGiesvedlaa 31 
                  + GiGp+tA +l++   +s+e++++
  CCD26403.1 235 NIRGIGPVTAFKLIKE-HGSLEKIIE 259
                 589*********9999.677777655 PP

>> HHH_2  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00012      0.37       8      31 ..     236     259 ..     235     264 .. 0.93

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00012
       HHH_2   8 IrhVGektAklLakrFksldaLkk 31 
                 Ir +G  tA +L k+ +sl+++ +
  CCD26403.1 236 IRGIGPVTAFKLIKEHGSLEKIIE 259
                 9*******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1332  (0.074293); expected 358.6 (0.02)
Passed bias filter:                      639  (0.0356406); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.44
# Mc/sec: 2628.55
//
Query:       CCD26404.1  [L=297]
Description: hypothetical protein NDAI_0H02300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-49  168.4   0.4    2.6e-49  168.2   0.4    1.0  1  Aldose_epim  Aldose 1-epimerase


Domain annotation for each model (and alignments):
>> Aldose_epim  Aldose 1-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.2   0.4   1.5e-53   2.6e-49       7     299 ..      16     285 ..       9     287 .. 0.93

  Alignments for each domain:
  == domain 1  score: 168.2 bits;  conditional E-value: 1.5e-53
                  ETTEEEEEECTCTTEEEEEEETT.STEESB-B-STHHHHHHSCCSSCEECSS-SEEETTEEEETTEEEECCCCBT.......TTCEETBSGGGSB-EE CS
  Aldose_epim   7 ngaglsakislyGAtllslkvpdkeqrevllgsddaeeylkdsyfgatlgrvanRianGeFeldGkpyqlpqnee.......gknplHGgargreWev 97 
                  +++++s++i +yGAt+ s+k ++   +e l++s+           + ++g++++R   G     G+p  +p++++       +k+p+HG+ar+++We 
   CCD26404.1  16 HNKETSVTILKYGATVYSWKLNS---EEQLWLSTA----------AKLDGSKPVR---G-----GIPLVFPVFGKnetdellSKLPQHGLARNSTWEF 92 
                  5589******************9...8*******8..........7*********...8.....********************************** PP

                  EEEEE..TTEEEEEEEEEEETCHC...STSEEEEEEEEEEETTEEEEEEEEEEESS..S-EEEEEEEEEEEETSSCTCTGGEEEEEEEEEEEECTTSG CS
  Aldose_epim  98 eevke..ddgvtvslvlkpdgeeg...ypgdlevrvtytLnednelkieyeatndg..kptpfnltnHtYFnlsgesidshelqieadeylevdeeli 188
                    +++   ++v++ l  k ++ e    +p ++++ +t++L+ d  lk  +e+ n++  +++ fn+ +HtY++++    d++  +++++ ++++ +   
   CCD26404.1  93 LGQTKenPPTVQFGLNEKIANPELtalWPRSFQLVLTVELGADY-LKTGIEVDNTSntEALKFNWLFHTYLRIE----DIEDTMVSNLAGMHLYD--- 182
                  **9999999******99988775569******************.7777777776666****************....*****************... PP

                  EEEEEEECTTCCCCCCSSEEHCSSETEEEEEEEESSCSEEEEEETTTTEEEEEEEETTSSEEEEEECTTTT..SEECCEEESSECTCETCCCECHHHT CS
  Aldose_epim 189 ptgelkdvkgtpfdfrqpkaigedlkglDhayllksklkaviidpdkksgiklevsttepalvvytgnflk..kylsreglaletqmlpdepnhpefp 284
                        ++ +++f ++++ +i++++ ++D++y +   ++  i++++++++i+  ++++ p++vv++++ +k  ++ + e+  ++++m+++ep+h+++ 
   CCD26404.1 183 ------QLIKESF-VDKHPVITFHQ-ETDCIYSNVD-ADRNIQVVSRGKQIHTLKRENLPDAVVWNPWVKKseGMGDFEPKIGYKNMVCVEPGHVHDF 271
                  ......5555666.9*********9.**********.***********************************************************99 PP

                  -EEEHTTTEEEEEEE CS
  Aldose_epim 285 sivlkpGesysaets 299
                   i l+pG++++a++ 
   CCD26404.1 272 -IELAPGKKWNASQL 285
                  .**********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       323  (0.0180155); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 2114.37
//
Query:       CCD26405.1  [L=608]
Description: hypothetical protein NDAI_0H02310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-06   28.6  22.3    2.8e-06   27.3  22.3    1.7  1  zf-MYND   MYND finger
  ------ inclusion threshold ------
      0.011   15.8   0.0        5.7    7.1   0.0    2.5  2  Arm       Armadillo/beta-catenin-like repeat
       0.15   11.9   0.1       0.42   10.4   0.0    1.7  2  DUF1866   Domain of unknown function (DUF1866)


Domain annotation for each model (and alignments):
>> zf-MYND  MYND finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3  22.3   4.7e-10   2.8e-06       3      38 .]     485     524 ..     469     524 .. 0.87

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 4.7e-10
                 TT--.....B-SC..E-TTTS-SEESSHHHHHHCHHHHCCCH CS
     zf-MYND   3 vCgk....aealk..kCagCksvfYCskeCqradwksHkteC 38 
                 +Cgk     +  +  kC +C++++YCsk+Cq + w++H+ +C
  CCD26405.1 485 SCGKweeyPK--QfsKCHRCRRTKYCSKQCQVNSWEYHRYWC 524
                 6888974333..256*************************** PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0     0.002        12       1      23 [.      50      72 ..      50      81 .. 0.83
   2 ?    7.1   0.0   0.00096       5.7       2      22 ..     126     146 ..     125     154 .. 0.88

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.002
                SHHHHHHHHHTTHHHHHHHHTTT CS
         Arm  1 nsenkdavieaGavppLvrLLss 23
                +++ +++v + Ga+++L++ L++
  CCD26405.1 50 SPKVRETVANDGALKRLISILRN 72
                57899**************9984 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.00096
                 HHHHHHHHHTTHHHHHHHHTT CS
         Arm   2 senkdavieaGavppLvrLLs 22 
                 +e ++ v+eaG++p L + L+
  CCD26405.1 126 EETRQKVVEAGILPLLATVLD 146
                 6789************98886 PP

>> DUF1866  Domain of unknown function (DUF1866)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   7.1e-05      0.42      36      74 ..     205     243 ..     200     258 .. 0.85
   2 ?   -3.1   0.0       1.1   6.3e+03      15      53 ..     553     591 ..     548     593 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.1e-05
                 S-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTCEE CS
     DUF1866  36 sgdedeknifdenlideLlqeltslGeviLvRfvedkmw 74 
                 +g e+e+n fde+ ++  +++ +++Gev     v+d+ w
  CCD26405.1 205 NGIEHEQNLFDEDFLSSTMTQPSDFGEVWQDPTVDDQTW 243
                 67799***********************99999999888 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 1.1
                 XXXXXS-----TT-EEEEEECS-SCCCCHS--HHHHHHH CS
     DUF1866  15 vfkeviallGPpDgtilvslksgdedeknifdenlideL 53 
                 +  +v++l GP  +   v   sgd +  +  +e+ + eL
  CCD26405.1 553 INTNVSTLEGPTASDNSVMWESGDGPLITATNEDTMVEL 591
                 667899999998888778888888877777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1056  (0.058899); expected 358.6 (0.02)
Passed bias filter:                      437  (0.0243739); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.25s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4270.19
//
Query:       CCD26406.1  [L=342]
Description: hypothetical protein NDAI_0H02320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.6e-63  214.3   0.1    2.1e-63  213.9   0.1    1.1  1  Prenyltransf  Putative undecaprenyl diphosphate synthase
  ------ inclusion threshold ------
        3.2    7.8   6.1       0.36   10.8   0.7    2.2  3  SHP           Small hydrophobic protein


Domain annotation for each model (and alignments):
>> Prenyltransf  Putative undecaprenyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.9   0.1   2.3e-67   2.1e-63       1     217 [.      72     289 ..      72     295 .. 0.92

  Alignments for each domain:
  == domain 1  score: 213.9 bits;  conditional E-value: 2.3e-67
                   EE--HHHHHHHTT.S-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEEGGGGGS-HHHHHHHHHHHH...HHHHHHHHHHHHHT..TEEEEEESSG CS
  Prenyltransf   1 imDGNrRwAkkrgleereeGhkaGaealkeilelclelgvkvvtvYafSteNfkRskeevdalmellk...eellkeelkellke..gvrvrviGdl 92 
                   imDGNrR+Ak+r+ ++ ++Gh+aG  +l +++ +c+++gvk+v+ YafS+eNf+Rskeevd+lm+l++   +e++++  +++++   g +++++Gd+
    CCD26406.1  72 IMDGNRRYAKSRN-LPLKKGHEAGGITLLTLVYICKKIGVKCVSAYAFSIENFNRSKEEVDTLMNLFAiklDEFARRA-NDYKDPlyGSKLKIVGDK 166
                   9************.77777************************************************87776677665.78888778********** PP

                   GGS-HHHHHHHHHHHHHHT.TTTSEEEEEEEEE-HHHHHHHHHHHHHHTT..SSSGGGHSHHHHHCTSTT..TSSS-SEEEEESS--S-TTSSTTTT CS
  Prenyltransf  93 ellpedvlealekaeeatkknnkklvlniavnYgsrdeiveavrelvkekseekkkeeideetlekhlytakalpdpDlliRtsGeeRlSnFllwql 189
                   ++l+e+++e+++k+ee tk n +++++ ++++Y+sr+ei +++++ v++++++++   i+ + +++++   k  + +DlliRtsG++R S+++lwq+
    CCD26406.1 167 DMLSEELREKIKKVEEITK-NGDDFTFFVCFPYTSRNEIFHTMKNSVESYVKDANP--ITLSSFSRNMFFDKYSNRCDLLIRTSGHNRFSDYMLWQS 260
                   *******************.6666*************************9888887..899********977799*********************6 PP

                   TT-E.EEEESSSGGG--HHHHHHHHHHHH CS
  Prenyltransf 190 ayse.lyfldvlWPdfskedllealleyq 217
                    ++  + f d+lWP+f+   ++ ++l+++
    CCD26406.1 261 HENAtIEFHDKLWPNFGFFLMYLIILRWS 289
                   5555899************9999999996 PP

>> SHP  Small hydrophobic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.52   4.7e+03      20      30 ..      20      30 ..      14      35 .. 0.80
   2 ?   -2.7   0.3      0.69   6.2e+03      19      25 ..      43      49 ..      24      70 .. 0.51
   3 ?   10.8   0.7     4e-05      0.36       6      28 ..     264     286 ..     260     295 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.52
         SHP 20 lihmiltlisl 30
                +ih + tli l
  CCD26406.1 20 IIHQVGTLIRL 30
                78999999976 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.69
         SHP 19 tlihmil 25
                tli    
  CCD26406.1 43 TLINTAY 49
                4444433 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 4e-05
         SHP   6 itieftskfwpyftlihmiltli 28 
                  tief  k+wp f +  m l ++
  CCD26406.1 264 ATIEFHDKLWPNFGFFLMYLIIL 286
                 69***********9988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       535  (0.0298399); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2603.80
//
Query:       CCD26407.1  [L=993]
Description: hypothetical protein NDAI_0H02330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-12   47.3  21.8    0.00019   22.2   0.1    7.3  7  WD40             WD domain, G-beta repeat
    7.4e-08   32.6   1.5       0.39   11.1   0.1    5.4  5  ANAPC4_WD40      Anaphase-promoting complex subunit 4 WD40 do
     0.0015   18.0   2.0     0.0015   18.0   2.0    1.8  2  TF_Zn_Ribbon     TFIIB zinc-binding
  ------ inclusion threshold ------
      0.036   14.1   0.6          7    6.7   0.0    3.6  3  BBS2_Mid         Ciliary BBSome complex subunit 2, middle reg
       0.12   12.7   0.3       0.31   11.4   0.3    1.6  1  Lar_restr_allev  Restriction alleviation protein Lar
        5.6    7.2   6.3         30    4.9   0.1    3.1  3  HNH              HNH endonuclease


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0017       5.1      17      38 .]     274     295 ..     256     295 .. 0.84
   2 !   22.2   0.1   6.2e-08   0.00019       3      37 ..     390     424 ..     389     425 .. 0.85
   3 !   22.0   0.6     7e-08   0.00021       4      38 .]     432     467 ..     429     467 .. 0.84
   4 ?   -0.0   0.0      0.64   1.9e+03       6      35 ..     476     506 ..     472     507 .. 0.66
   5 ?    4.0   0.0     0.035     1e+02       4      38 .]     536     579 ..     533     579 .. 0.71
   6 ?   -0.4   0.2      0.88   2.6e+03      16      32 ..     603     619 ..     593     624 .. 0.84
   7 ?   -1.5   0.2       1.8   5.5e+03       7      20 ..     726     739 ..     705     743 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0017
                 EEETTSSEEEEEETTSEEEEEE CS
        WD40  17 afspdgawlasGsdDgtvriWd 38 
                 +fs dg+++++ ++ g +riW+
  CCD26407.1 274 KFSLDGKFMVTTGKSGIIRIWK 295
                 4788******9999*******6 PP

  == domain 2  score: 22.2 bits;  conditional E-value: 6.2e-08
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 c + ++ H s+v +l++s+++ ++ ++s+D+tv++W
  CCD26407.1 390 CYKMFKEHkSDVLDLDWSKNNFLV-TASMDKTVKLW 424
                 567799**888*******997776.6788******* PP

  == domain 3  score: 22.0 bits;  conditional E-value: 7e-08
                 EEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 lrt++ H ++vt++af+p  +  ++sG+ D+++r+W+
  CCD26407.1 432 LRTFR-HqDFVTCVAFHPIDDRfIISGCLDHKCRLWS 467
                 89998.7577*****9999999346999********5 PP

  == domain 4  score: -0.0 bits;  conditional E-value: 0.64
                 EEESSSS.EEEEE.EETTSSEEEEEETTSEEE CS
        WD40   6 tltGHss.vtsla.fspdgawlasGsdDgtvr 35 
                 +++ H + +tsl   + dg++ + G+ +g ++
  CCD26407.1 476 EFDCH-DlITSLTlSPEDGKYTIVGTFNGYIH 506
                 67899.669***96666666644476666666 PP

  == domain 5  score: 4.0 bits;  conditional E-value: 0.035
                 EEEEESS..SS...EEEEE.....EETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH..ss...vtsla.....fspdgawlasGsdDgtvriWd 38 
                 + +++ H  ++   +t+l       + + +++++   D ++ri+d
  CCD26407.1 536 ISIYKNHkiQHgpkITGLEsfrakIDNSLRLIVTTN-DSKIRIFD 579
                 566776644335688877777777777779999877.******98 PP

  == domain 6  score: -0.4 bits;  conditional E-value: 0.88
                 EEEETTSSEEEEEETTS CS
        WD40  16 lafspdgawlasGsdDg 32 
                 la +++++ ++s+sdD+
  CCD26407.1 603 LALHHNQPVVMSSSDDH 619
                 567999999***9*886 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 1.8
                 EESSSSEEEEEEET CS
        WD40   7 ltGHssvtslafsp 20 
                    H +vts+   p
  CCD26407.1 726 HASHAPVTSFTSAP 739
                 22334477665555 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.053   1.6e+02      38      69 ..     267     298 ..     260     321 .. 0.84
   2 !   11.1   0.1   0.00013      0.39      35      89 ..     395     446 ..     385     448 .. 0.89
   3 !    8.5   0.0   0.00083       2.5      39      88 ..     439     487 ..     436     491 .. 0.88
   4 ?    1.7   0.0      0.11   3.2e+02      41      81 ..     483     524 ..     481     534 .. 0.80
   5 !    6.0   0.0    0.0048        14      52      76 ..     565     589 ..     536     597 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.053
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  d+ +   +++ dgk+++   + g +r+ ++ +
   CCD26407.1 267 DRAIWITKFSLDGKFMVTTGKSGIIRIWKVLN 298
                  5566667899*****************99876 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00013
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++++s v +L W+++ ++L+ a  d +v+l ++  ++ +++++ ++   vtc+ +
   CCD26407.1 395 KEHKSDVLDLDWSKN-NFLVTASMDKTVKLWHIDRATSLRTFRHQDF--VTCVAF 446
                  678999******976.79************************88877..999987 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00083
  ANAPC4_WD40  39 sevrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                    v+++a++p d++++  ++ d ++rl ++ + +v  ++++++   +t+l+
   CCD26407.1 439 DFVTCVAFHPiDDRFIISGCLDHKCRLWSILDNEVSFEFDCHDL--ITSLT 487
                  5689999998689****************************987..77775 PP

  == domain 4  score: 1.7 bits;  conditional E-value: 0.11
  ANAPC4_WD40  41 vrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  ++sL  +p dgk   v++ +g +++l  +  + v+s++v+++
   CCD26407.1 483 ITSLTLSPeDGKYTIVGTFNGYIHILLTKGLQHVSSFHVTDK 524
                  56666664389***************9999999999988776 PP

  == domain 5  score: 6.0 bits;  conditional E-value: 0.0048
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhsl 76 
                   L v ++d+++r++d++s k+++ l
   CCD26407.1 565 RLIVTTNDSKIRIFDVKSRKMMELL 589
                  599*****************98765 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       2.2   6.4e+03       8      20 ..     757     769 ..     753     769 .. 0.79
   2 !   18.0   2.0   4.9e-07    0.0015       2      31 ..     960     991 ..     959     993 .] 0.85

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.2
                   CEECHEETSTTCE CS
  TF_Zn_Ribbon   8 stnlveDpergel 20 
                   st+++eD++  e+
    CCD26407.1 757 STEFYEDTNDYEF 769
                   6779999998886 PP

  == domain 2  score: 18.0 bits;  conditional E-value: 4.9e-07
                   EETTTTCEEC..HEETSTTCEEESSSSBEEEE CS
  TF_Zn_Ribbon   2 kCPnCgstnl..veDpergelvCtdCGlVled 31 
                   kC +C+++n+  + + ++++++CtdCG+Vl +
    CCD26407.1 960 KCDICHGSNFeiLSERSENTYYCTDCGTVLNN 991
                   899**99664449999*************975 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.028        84       5      84 ..     402     478 ..     400     508 .. 0.64
   2 ?    6.7   0.0    0.0023         7       9      29 ..     560     580 ..     553     590 .. 0.82
   3 ?   -2.7   0.0         2     6e+03      52      67 ..     798     813 ..     781     822 .. 0.59

  Alignments for each domain:
  == domain 1  score: 3.3 bits;  conditional E-value: 0.028
    BBS2_Mid   5 advdgdgeneLvvgsddfeirvfkee..elvaeitetekvvsla.rlekerfayaleNGtvgvyekkerlWrvksknevvala 84 
                 +d+d   +n Lv +s d ++++++ +  + +++++ ++ v+++a +  ++rf+++      g  ++k rlW++  ++  + ++
  CCD26407.1 402 LDLDWSKNNFLVTASMDKTVKLWHIDraTSLRTFRHQDFVTCVAfHPIDDRFIIS------GCLDHKCRLWSILDNEVSFEFD 478
                 6778888899999999999999987733556777777777665423334455554......4445555555555555555555 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0023
    BBS2_Mid   9 gdgeneLvvgsddfeirvfke 29 
                  d++  L+v ++d +ir+f+ 
  CCD26407.1 560 IDNSLRLIVTTNDSKIRIFDV 580
                 467799*************85 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 2
    BBS2_Mid  52 rfayaleNGtvgvyek 67 
                  ++++ + Gt+ v++ 
  CCD26407.1 798 IMVTTDNAGTIRVFRT 813
                 4444444555555553 PP

>> Lar_restr_allev  Restriction alleviation protein Lar
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   0.00011      0.31       5      36 ..     960     987 ..     958     992 .. 0.92

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
  Lar_restr_allev   5 pCPfCggravlersqrvvaeigqcvyCadCga 36 
                       C+ C g +  + s+r  +    + yC+dCg 
       CCD26407.1 960 KCDICHGSNFEILSERSEN----TYYCTDCGT 987
                      6*****************9....*******97 PP

>> HNH  HNH endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       3.8   1.1e+04      12      26 ..     601     615 ..     595     619 .. 0.69
   2 ?    4.6   0.2     0.013        38      12      35 ..     767     790 ..     753     793 .. 0.82
   3 ?    4.9   0.1      0.01        30      28      42 ..     952     966 ..     946     968 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.8
         HNH  12 ealevdHiipisqgg 26 
                  +l  +H +p+  + 
  CCD26407.1 601 AQLALHHNQPVVMSS 615
                 478899999987654 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.013
         HNH  12 ealevdHiipisqggaddieNlql 35 
                 +++  d+i ++  g++++ +N++ 
  CCD26407.1 767 YEFDDDYITHKRSGNKNNNSNIIN 790
                 78999****************996 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.01
         HNH  28 ddieNlqllCksCHn 42 
                 ++ +Nl+l C  CH 
  CCD26407.1 952 TSPSNLELKCDICHG 966
                 569***********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.28s 00:00:01.07 Elapsed: 00:00:00.47
# Mc/sec: 6382.60
//
Query:       CCD26408.1  [L=706]
Description: hypothetical protein NDAI_0H02340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-69  232.6   0.0    8.4e-69  231.9   0.0    1.4  1  Pkinase        Protein kinase domain
    2.9e-31  108.7   0.0    4.3e-31  108.1   0.0    1.2  1  Pkinase_Tyr    Protein tyrosine kinase
    2.1e-10   41.1   0.4    5.4e-10   39.8   0.4    1.8  1  Pkinase_C      Protein kinase C terminal domain
    2.3e-05   23.5   0.1    4.9e-05   22.4   0.1    1.5  1  Haspin_kinase  Haspin like kinase domain
  ------ inclusion threshold ------
      0.013   15.2   0.0        2.2    7.8   0.0    2.5  2  FTA2           Kinetochore Sim4 complex subunit FTA2
      0.013   14.9   0.0      0.033   13.5   0.0    1.7  2  Kinase-like    Kinase-like
      0.055   12.8   0.2       0.12   11.7   0.2    1.5  1  Kdo            Lipopolysaccharide kinase (Kdo/WaaP) family
        2.7    7.3  10.0        6.4    6.1  10.0    1.5  1  SelP_N         Selenoprotein P, N terminal region
        4.5    5.7  13.7        6.6    5.2  13.7    1.1  1  Macoilin       Macoilin family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  231.9   0.0   4.2e-72   8.4e-69       3     264 .]     376     629 ..     374     629 .. 0.94

  Alignments for each domain:
  == domain 1  score: 231.9 bits;  conditional E-value: 4.2e-72
                 EEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--HHHH CS
     Pkinase   3 kleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslseeea 100
                  l+ +G+GsfGkV+++++k+t+ki+A+K i+k+ + +k+e +++l+E ++l+++++p+iv l+ +f+++++lylvl +++ggel+ +l+r+g ++ ++a
  CCD26408.1 376 LLKVIGKGSFGKVMQVRKKDTQKIYALKAIRKSYIVSKSEvTHTLAERTVLARVNCPFIVPLKFSFQSSEKLYLVLACINGGELFYHLQREGRFDLSRA 474
                 6789********************************99999********************************************************** PP

                 HHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEE.SSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STT CS
     Pkinase 101 kkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlake.lessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfs 198
                 +++++++l +le lH+ ++i+rDlKpeNiL+d +g++ ++DFGl+k  ++ + k+++f+gt+eYlAPE+l +++y+k vD+W+lG++lye+ltg pp++
  CCD26408.1 475 RFYTAELLCALETLHNLNVIYRDLKPENILLDYQGHIALCDFGLCKLnMKDDDKTDTFCGTPEYLAPELLLGQGYTKVVDWWTLGILLYEMLTGLPPYY 573
                 *********************************************972555566********************************************* PP

                 TSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT...HHHHHTSGGG CS
     Pkinase 199 gekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt...aeellqhpyl 264
                     +e+v +++++      il   +  l+ ++ ++++akdll +ll++dp +Rl+   a+e+++hp++
  CCD26408.1 574 ----DEDVPRMYRK------IL---QDPLRFPDGFDQDAKDLLIQLLNRDPLRRLGcngADEIKSHPFF 629
                 ....3334445555......44...4589999***********************999999******98 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.0   2.2e-34   4.3e-31       3     249 ..     376     614 ..     374     619 .. 0.90

  Alignments for each domain:
  == domain 1  score: 108.1 bits;  conditional E-value: 2.2e-34
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS..SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeea..teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                  l k +G+G+fGkV++ + k    +++   a+K +++++  +++e ++ l e +++ +++ p iv l     ++e+l++v+  ++gG+L  +L+++   
   CCD26408.1 376 LLKVIGKGSFGKVMQVRKK----DTQKIYALKAIRKSYivSKSEVTHTLAERTVLARVNCPFIVPLKFSFQSSEKLYLVLACINGGELFYHLQRE--G 467
                  6799**********99988....677778999997765226677899999********************************************8..9 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllw 196
                  +++l++   +++++ +++e L++ +++ rdl   N+Ll+ + ++ ++DfGL++  +kdd+ +  ++     +++apE l  + +t+  D W  G+ll+
   CCD26408.1 468 RFDLSRARFYTAELLCALETLHNLNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKT--DTFCGTPEYLAPELLLGQGYTKVVDWWTLGILLY 563
                  9****************************************************997666654..44455679************************** PP

                  HHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 197 EiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                  E++t g  py + +  ++++k+ ++  l+ p+   ++ ++l+ + +++dp +R
   CCD26408.1 564 EMLT-GLPPYYDEDVPRMYRKILQD-PLRFPDGFDQDAKDLLIQLLNRDPLRR 614
                  ****.****************9764.688999999999999999999999888 PP

>> Pkinase_C  Protein kinase C terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.4   2.7e-13   5.4e-10       1      46 []     650     690 ..     650     690 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.8 bits;  conditional E-value: 2.7e-13
   Pkinase_C   1 vesdeDtsNFDpeFTeedprdtppddmpagspltssvqenFrGFtY 46 
                 v+s  Dt+NFD eFT+e+p d+ +d++     l++svq++F G+tY
  CCD26408.1 650 VASSVDTRNFDQEFTSEKPVDSVVDEY-----LSESVQKQFGGWTY 690
                 67889********************75.....*************9 PP

>> Haspin_kinase  Haspin like kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.1   2.5e-08   4.9e-05     167     261 ..     422     526 ..     330     535 .. 0.74

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 2.5e-08
  Haspin_kinase 167 lqdkvlkek........pdfyseqqlflvlllkdkGtdLeevklkswkqalsifwqivkiLyvaEt..kfeFEHRdLhldniLvdknlnvtlidlk 252
                     +  +++ +          f+s+++l+lvl   ++G+   +++ +   +  +  + +++ L + Et  +++   RdL+ +niL+d ++++ l+d+ 
     CCD26408.1 422 ERTVLARVNcpfivplkFSFQSSEKLYLVLACINGGELFYHLQREGRFDLSRARFYTAELLCALETlhNLNVIYRDLKPENILLDYQGHIALCDFG 517
                    23333333344444444789999*******************99999999999999*********933455669********************** PP

  Haspin_kinase 253 lsRle.sseg 261
                    l++l+ + ++
     CCD26408.1 518 LCKLNmK-DD 526
                    ****953.32 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0011       2.2      22      58 ..     372     410 ..     365     433 .. 0.77
   2 ?    4.5   0.0     0.011        23     178     204 ..     478     504 ..     472     519 .. 0.77

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0011
        FTA2  22 kdiefleyLgkglhsiVlkvkirgk..eYALKlFrflea 58 
                 +d+++l+++gkg  + V++v+ ++   +YALK  r+ + 
  CCD26408.1 372 DDFDLLKVIGKGSFGKVMQVRKKDTqkIYALKAIRKSYI 410
                 5899****************9986545*****8776644 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.011
        FTA2 178 lpkllrdlkklhklgIvvrDlkeenyi 204
                 + +ll  l+ lh+l ++ rDlk+en++
  CCD26408.1 478 TAELLCALETLHNLNVIYRDLKPENIL 504
                 6789999*****************986 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.2   2.5e+03      18      44 ..     378     404 ..     376     424 .. 0.80
   2 ?   13.5   0.0   1.7e-05     0.033     149     247 ..     477     569 ..     457     614 .. 0.72

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.2
  Kinase-like  18 ellkkgdrsvvfevkdqetgeplavkv 44 
                  ++++kg +++v++v+ + t++  a+k 
   CCD26408.1 378 KVIGKGSFGKVMQVRKKDTQKIYALKA 404
                  689999999999999999988888775 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.7e-05
  Kinase-like 149 lTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlsevekgfaPpEllgsrggytrknktkmthkldaWqlGlviyriwcl 246
                   T++l+     L+++ ++  +++++n+lld +g + l +f+ L +   k    ++      pE l+     ++     +t  +d W+lG+  y +   
   CCD26408.1 477 YTAELLCALETLHNLNVIYRDLKPENILLDYQGHIALCDFG-LCKLNMKDD-DKTDTFCGTPEYLAPELLLGQ----GYTKVVDWWTLGILLYEMLTG 568
                  47888888899*****************************7.555555555.444444445666666555333....68889***********99765 PP

  Kinase-like 247 k 247
                   
   CCD26408.1 569 L 569
                  4 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   6.1e-05      0.12     131     174 ..     485     524 ..     459     531 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.1e-05
         Kdo 131 iaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlr 174
                  + lh+++v  +dl + nill+ ++    +i+l D+  ++l ++
  CCD26408.1 485 LETLHNLNVIYRDLKPENILLDYQG----HIALCDFGLCKLNMK 524
                 5789*********************....*******99999885 PP

>> SelP_N  Selenoprotein P, N terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  10.0    0.0032       6.4     168     213 ..      23      62 ..       7      80 .. 0.41

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0032
      SelP_N 168 tkaaeekpaeaeektehehahshkqghkhhekhghhHkekeelses 213
                 + + +++ ++ae +++ +        h hh++h+hhH++k++ s+s
  CCD26408.1  23 VGKDRDRGEKAELENNTR------LFHFHHSNHDHHHHHKHQNSQS 62 
                 112233333332222222......3333333333333332222222 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  13.7    0.0033       6.6     255     435 ..      18     200 ..       5     210 .. 0.55

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0033
    Macoilin 255 yrekkksakssrsdskkkhehn...esvdsklqekeymenkskskr.lsksessgsesellveesvkskssssssssnknskkasagsagssnssskkh 349
                 ++ek+   k+++  +k + e+n    + ++  +++++++++ +s+  +++++   + ++++v++ ++      ss+  +++++++ +s+++  s s++ 
  CCD26408.1  18 NKEKEVG-KDRDRGEKAELENNtrlFHFHHSNHDHHHHHKHQNSQSsVTSDDFFVDRKKTIVKSPSSIAPVRLSSEVLSSTSTMKDTSIAA-DSRSESS 114
                 3333222.22222222222333455344444444444444444443044444455555555555555554455555445555555544433.3333333 PP

    Macoilin 350 sessksvtsssssknskkqklpaGkssaalkdaaenslpnnqlskkdalvrL.eadikkLkaeLqasrqteqelrskissltseers 435
                 +++s  +t++++++n+   +++aG  + +  +  + +lp   +sk++ l rL  + i+ L+ +L+++ +t     ski++ + e rs
  CCD26408.1 115 RSESTAPTTGTATSNH-HTNTSAGIMTIKVYNGEDFTLPIPITSKEQILSRLlGSGINSLHHNLSNEVNTLISQLSKIQLEAHEGRS 200
                 3444444555544453.4445568888888888899999999999999998625679999999998877766666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 4958.21
//
Query:       CCD26409.1  [L=569]
Description: hypothetical protein NDAI_0H02350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.6e-37  125.8   0.6    6.4e-36  123.1   0.2    2.2  2  PGM_PMM_I    Phosphoglucomutase/phosphomannomutase, alpha/bet
    1.6e-24   86.3   0.0    2.9e-24   85.5   0.0    1.4  1  PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/bet
    3.3e-14   53.4   0.0    6.9e-14   52.3   0.0    1.6  1  PGM_PMM_II   Phosphoglucomutase/phosphomannomutase, alpha/bet
      4e-06   26.9   0.0    8.7e-06   25.8   0.0    1.6  1  PGM_PMM_IV   Phosphoglucomutase/phosphomannomutase, C-termina


Domain annotation for each model (and alignments):
>> PGM_PMM_I  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.1   0.2   1.4e-39   6.4e-36       2     137 ..      16     159 ..      15     160 .. 0.95
   2 ?    0.3   0.0      0.11   5.1e+02      96     113 ..     405     422 ..     400     424 .. 0.84

  Alignments for each domain:
  == domain 1  score: 123.1 bits;  conditional E-value: 1.4e-39
                 GGBBTTCEEEECCHCTBSCCHHHHHHHHHHHHCHHCSTS-EEEEEE-S-TTHHHHHHHHHHHHHCCT-CEEEEE...EB-HHHHHHHHHHCC..ECEEE CS
   PGM_PMM_I   2 qkfgtsGlRgkvgegeltpelveklgqaiaeylkaeakkkkvvvGrDtRvssrelaealaaglaanGvevillg...llptPavsfairklk..adagi 95 
                 qk+gtsGlR+k  +++ +p+++e+++qai++++++ ak++++vvG+D+R++++ + +++aa+ aanGv+++++g   ll+tPa+s+++r+++    +gi
  CCD26409.1  16 QKPGTSGLRKKTRVFKDKPHYTENFIQAIMDAIPEGAKGATLVVGGDGRYYNDVILHKIAAIGAANGVKKLVVGqhgLLSTPAASHIMRTYEekTTGGI 114
                 899***************************************************************************************8777***** PP

                 EE--TTS-TTCCC...EEEEETTTCE--CHHHHHHHHHHCCT-EE CS
   PGM_PMM_I  96 mitaSHnppeyng...iKvylsnGgpispeveekIeaiiekeeea 137
                 ++taSHnp++ ++   iK++lsnGgp++++v++kI +i +k + +
  CCD26409.1 115 ILTASHNPGGLENdmgIKYNLSNGGPAPEPVTNKIWEISKKMTHY 159
                 ********98666666**********************9998765 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.11
                 EE--TTS-TTCCCEEEEE CS
   PGM_PMM_I  96 mitaSHnppeyngiKvyl 113
                  i   Hnp ++  iK+++
  CCD26409.1 405 AIYNKHNPEKDVSIKIIQ 422
                 57789**********986 PP

>> PGM_PMM_III  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.5   0.0   6.4e-28   2.9e-24       2     114 .]     309     429 ..     308     429 .. 0.87

  Alignments for each domain:
  == domain 1  score: 85.5 bits;  conditional E-value: 6.4e-28
                  HHHHHHHHHHHHHCH..CSTTTC.EEEEETTS-THHHHHHHHTT-EEEEESSSCHHHHHHHHHTTECEEEETT.CEEEETTTBSS--HHHHHHHHHHH CS
  PGM_PMM_III   2 gdqllallakyllee..klkpga.gvvktvmtslalervakklgiklvetkvGdkyvleemkeegavlGgEeS.ghiifldeattkDGilaallvlei 95 
                  gd++ a++a+y+ e    +k+g  g++++++t + ++rvak++g++++++++G+k++++++++++++++gEeS g+++++ +  +kDG++a++++l++
   CCD26409.1 309 GDSV-AIIAEYASEIpyFKKQGIyGLARSFPTASSIDRVAKAHGLNCYQVPTGWKFFCALFDANKLSICGEESfGTGSNHVR--EKDGLWAIIAWLNV 403
                  5665.56667776667866667779*******************************************************77..7************* PP

                  HH.......HHTS-HHHHHHHHHHHH CS
  PGM_PMM_III  96 la.......etgkslselleellkky 114
                  la       e++ s++ + +e+++ky
   CCD26409.1 404 LAiynkhnpEKDVSIKIIQDEFWNKY 429
                  **998887766788888888888876 PP

>> PGM_PMM_II  Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   1.5e-17   6.9e-14       2      99 ..     192     299 ..     191     302 .. 0.91

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 1.5e-17
                 HHHHHGGGTS-........HHHHHHHT-EEEEE-TT-TTHHHHHHHHHH.TT-..EEEES-----TT-TTSS----TT-TTTTHHHHGGGGG-SEEEEE CS
  PGM_PMM_II   2 aYiealkekvd........seaikksglkvvidplhGaggeilkellke.lgv..dvvelnaepdpdfptkapnpeekealkllielvkkegadlglaf 89 
                 aY++ lke++d        ++  +k++ k+++d ++G++g + k ++ + +g+  d v  + +p pdf++ +p+p+   + k+l++ v++e+ ++g+a 
  CCD26409.1 192 AYVDFLKEIFDfelikkfiHNQREKKHWKLLFDGMNGVTGPYGKAIFVDeFGLpaDEVLQQWHPQPDFGGVHPDPNL-TYAKALVDRVNREKIEFGAAS 289
                 799999999998888777777778889*******************966488899999*******************.********************* PP

                 -TTS-BEEEE CS
  PGM_PMM_II  90 DgDaDRlgvv 99 
                 DgD+DR ++ 
  CCD26409.1 290 DGDGDRNMIY 299
                 ******9986 PP

>> PGM_PMM_IV  Phosphoglucomutase/phosphomannomutase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     2e-09   8.7e-06      24      60 ..     492     531 ..     442     541 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 2e-09
                 HCCCCCCCCGCCEEEE.EEEETTCCE...EEEEEEESSHH CS
  PGM_PMM_IV  24 sikeglkilledGrrlavRpSGTepl...lrvyvEaksde 60 
                 s  +gl ++l +G+r++vR SGT++    +r+yvE ++d+
  CCD26409.1 492 SAHQGLYFRLSNGSRVVVRLSGTGSSgatIRLYVEEYTDD 531
                 5589999*****************************9554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       426  (0.0237604); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 4037.22
//
Query:       CCD26410.1  [L=640]
Description: hypothetical protein NDAI_0H02360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-37  128.4   0.4    9.6e-37  126.7   0.1    1.9  2  Ku        Ku70/Ku80 beta-barrel domain
    2.1e-17   63.6   0.3    3.5e-17   62.9   0.3    1.3  1  Ku_N      Ku70/Ku80 N-terminal alpha/beta domain


Domain annotation for each model (and alignments):
>> Ku  Ku70/Ku80 beta-barrel domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.7   0.1   1.1e-40   9.6e-37       5     200 ..     243     470 ..     241     481 .. 0.85
   2 ?   -1.4   0.0      0.18   1.6e+03      69      96 ..     578     606 ..     518     611 .. 0.68

  Alignments for each domain:
  == domain 1  score: 126.7 bits;  conditional E-value: 1.1e-40
          Ku   5 vsipVklykateeakkpkfkkldketne..........pvkvetkyvcsdtg...........................evdeedivkgyeyGgevvpl 66 
                 +si+V++y+at+  ++++ k++ k+ ++          p+k+ ++y  ++ +                           +v+++ i+k+y+yG ++v+l
  CCD26410.1 243 ISIKVEGYPATKAVSSLNRKNVIKTPKTentsaeftyePIKSVIEYEIKTRKedkpgnddangdgaevaasqdedfvsiTVSQNSITKAYRYGADYVVL 341
                 79*******************98888888899999999556655555555423455677788999999999999999977******************* PP

          Ku  67 tkeelekiksfdskglkllgFvplseilkeylsikssyfiyP..ddkdekgstkafsaLveamleskkvaivrfvlrskskprlvaLvPqeeelsseee 163
                  +  +e+++  + ++l++ gF ++++ l++yl + +s fi+P  + +++++++ +f++Lv+ +l ++kvai+r+v++  s++++++LvP    l++  +
  CCD26410.1 342 PPSLQEQLTYETWPSLDIRGFLDKDS-LPRYLLTSESIFIMPdtRLGSQADNV-TFNVLVDVLLGQDKVAIARYVPKYYSEVQMCVLVPLLV-LHE--D 435
                 ******988855************99.88888899*******77778888888.***********************************933.333..2 PP

          Ku 164 ....keglvlvtLpfaddiRslkfpsldeeeeekknkptee 200
                      +++vl++Lpfa+d R  +fp+l      +k+k t+ 
  CCD26410.1 436 gktlIRAFVLNRLPFAEDERVADFPRL------TKRKTTSG 470
                 346778*********************......44444443 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.18
          Ku  69 eele.kiksfdskglkllgFvplseilke 96 
                 ++l+ ki++ +sk++++ g v++ +i k+
  CCD26410.1 578 DQLReKITPYTSKTMDVSGLVKMLQIKKI 606
                 33335799955999999999999887765 PP

>> Ku_N  Ku70/Ku80 N-terminal alpha/beta domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.3   3.9e-21   3.5e-17       2     200 ..       6     219 ..       5     231 .. 0.83

  Alignments for each domain:
  == domain 1  score: 62.9 bits;  conditional E-value: 3.9e-21
                 EEEEEE-SHHHHCTTCCSCCHHHHHHHHHHHHHHHHHHCTCS.EEEEEEEESSSSTBSTTTCTTEEEEE....ECCCHH.HHHHHHHHCCHHHCCHHHH CS
        Ku_N   2 vvfviDvspaMfesskeeespfelalkciaellkrkvisrsk.DlIavvlygtdesenkeqlenitvlr....eldlpd.aellkelkqivesedasve 94 
                 + f++D sp+M+++    ++     ++++++++ +k+++++k D+I+++ ++  e+ n+++++n+  l     ++   d + llke++  ++s  ++  
  CCD26410.1   6 TSFILDISPSMVKNDTVTKA-----IAYLEYTFLEKCKKQRKtDWISCYTANGHETSNSQGIPNVSNLCtflaPISSDDvVSLLKEFQRQCNS--IRDA 97 
                 67******************.....****************************************9977333344444336899999999999..3333 PP

                 CCCTTSS-TTHHHHHHHHHHHHHH.TTSSESEEEEEEEESSSSTCCGHHHHHHHHHHHH..........HHHHHHCTEEEE.EEEC....TSSSCECCT CS
        Ku_N  95 glaedssqasllsaLivclellqk.vgkklskkriflftdlddpfedsdklelilqklk..........akDlrderield.llkL....kkakkfdin 177
                    +++ ++ ++  L ++l++ +k  ++k+ k+ +++++dld +  +++++++   +             +D  ++ ++ + +lkL    + +  + in
  CCD26410.1  98 SEEQEDAESMVQCLLVASLDMREKfKKRKVLKQLMVFTDDLDGLNLADEEIDIFVGEIDsriilidcrdENDNNGTNGSGSaWLKLikklPGSVVYPIN 196
                 3334444455566666666766668899**************************99988999****888777777666644599998877899999*** PP

                 CHHHHCHCHHHHHHHHHHHCCCS CS
        Ku_N 178 efykdiiklgsdevkevmlsleg 200
                 +++ +i+++++++vk+v++++++
  CCD26410.1 197 DLLFEITSPKPAIVKPVRVFSGE 219
                 ******************99854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      532  (0.0296726); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.43
# Mc/sec: 4429.31
//
Query:       CCD26411.1  [L=381]
Description: hypothetical protein NDAI_0H02370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-13   49.9   0.6    6.1e-13   48.5   0.6    1.8  1  TP6A_N    Type IIB DNA topoisomerase


Domain annotation for each model (and alignments):
>> TP6A_N  Type IIB DNA topoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.6   3.4e-17   6.1e-13       1      62 []     102     164 ..     102     164 .. 0.98

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 3.4e-17
                 HHHHHHHHHHHHHHHHHHTT--EEHHHHHHHGGGS-SSHHHHHHHHHHHHHHHTS-.GGGGTE CS
      TP6A_N   1 rkfaqllkvlelihelleegkvvTkRdiYYrdvelFksQaesdrliddievllgvs.ReeLnv 62 
                 +k+a++l++l+++ + l++g  +T+Rdi+Y++ el+++Q+++  ++  ++ +++++ R++Lnv
  CCD26411.1 102 KKVACILTLLKTLRTRLQTGDISTIRDIFYSNMELYGRQQTIVYWLSILTEAFNLKsRDSLNV 164
                 699***********************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2920.02
//
Query:       CCD26412.1  [L=685]
Description: hypothetical protein NDAI_0H02380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    8.3e-55  185.0   0.1    4.8e-54  182.5   0.1    2.3  2  TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP b
    7.5e-50  168.7   0.0    4.9e-49  166.0   0.1    2.3  2  TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP b
    9.6e-41  138.7   0.3    2.6e-40  137.3   0.2    1.8  2  TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
  ------ inclusion threshold ------
       0.14   11.9   0.0       0.27   11.0   0.0    1.4  1  CO_dh         CO dehydrogenase beta subunit/acetyl-CoA syntha


Domain annotation for each model (and alignments):
>> TPP_enzyme_N  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.5   0.1   1.1e-57   4.8e-54       2     166 ..      93     256 ..      92     261 .. 0.98
   2 ?   -1.4   0.0      0.34   1.5e+03     115     160 ..     602     642 ..     549     644 .. 0.58

  Alignments for each domain:
  == domain 1  score: 182.5 bits;  conditional E-value: 1.1e-57
                   EHHHHHHHHHHHCT--EEEE---CCCHHHHCCHHCT.TSEEEE-SSHHHHHHHHHHHHHHHTS-EEEEE-CHHHHHHCHHHHHHHHHHT--EEEEEE CS
  TPP_enzyme_N   2 tvaealvraLkalgvehvfgvpGsrilplldalseeqgirvvlarhEqgaafaAdgyaratgkpgvvlvtsgpGatnaltalaeAkvdriPllvlsg 98 
                   ++++++ +++k+++v++vfg+pG+ ilp++da+ +++ +++vl  hEqga+++A+gyara+gk gvvlvtsgpGatn++t +a+A  d+iP++v++g
    CCD26412.1  93 SGGQIFNEMMKRQNVDTVFGYPGGAILPVYDAIYNSDAFKFVLPKHEQGAGHMAEGYARASGKTGVVLVTSGPGATNVVTPMADALADGIPMVVFTG 189
                   6899********************************************************************************************* PP

                   E--CCCHHS..TC--T-CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEEHHHCC- CS
  TPP_enzyme_N  99 drptslrgqgvlqqeldqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelpkdvlle 166
                   ++pts +g++++q e d +++ r++tk+++ v+s++elp  + +A+++a sgrpgPv+++lpkdv  +
    CCD26412.1 190 QVPTSAIGTDAFQ-EADVVGISRSCTKWNVMVRSVAELPLRINEAFEIANSGRPGPVLVDLPKDVTAA 256
                   *************.**************************************************9865 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.34
                   -CCHHHCCCSSEEEE-SSGGGHHHHHHHHHHHHHSSS--EEEEEEE CS
  TPP_enzyme_N 115 dqlalfrpvtkyaervtspeelpealrrAirtalsgrpgPvylelp 160
                   d ++l+  +     rv++  el  al++ ++      +gPv+le+ 
    CCD26412.1 602 DFMKLADAMGLKGIRVKNQGELDGALKEFVDY-----QGPVLLEVE 642
                   55555555555555555555555555555544.....499998875 PP

>> TPP_enzyme_C  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.27   1.2e+03     107     152 ..     200     248 ..     178     249 .. 0.66
   2 !  166.0   0.1   1.1e-52   4.9e-49       1     153 []     494     641 ..     494     641 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.27
                   BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHH.....CSSSEEEEE CS
  TPP_enzyme_C 107 dlkpvdfaklaealGakgarvekadveeleealkeal.....ekkgpalie 152
                    +++ d++ + +++      v +++v+el   + ea+      + gp+l++
    CCD26412.1 200 AFQEADVVGISRSCTKW--NVMVRSVAELPLRINEAFeiansGRPGPVLVD 248
                   37778888888888444..33334446776666666655558888999987 PP

  == domain 2  score: 166.0 bits;  conditional E-value: 1.1e-52
                   ESSHHHHHHHHHHTTSSSSEEECETTTS-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHTGGGHHHHHHTT-SEEEEEEE-SBCCCHHHHHHHHTC CS
  TPP_enzyme_C   1 diGcltlwaarllkvkrprsyltsgglgtmGyglpaAiGaklakpdrevvaivGDGgflmilqelatavrrnlpitvvvlnNegygmtggqqepfgg 97 
                   ++G++++waa+++  k prs++tsgglgtmGyglpaAiGa++a+pd+ v+ i GD +f m+l+el+ av+ ++pi++++lnNe  gm+ ++q+ f++
    CCD26412.1 494 GVGQHQMWAAQHWTWKHPRSFITSGGLGTMGYGLPAAIGAQVARPDAIVIDIDGDASFNMTLTELSSAVQAGVPIKILLLNNEEQGMVTQWQSLFYE 590
                   69*********************************************************************************************** PP

                   CTTTTSBB.BS----HHHHHHHTTSEEEEESSH.HHHHHHHHHHHHCSSSEEEEEE CS
  TPP_enzyme_C  98 krksgpagkdlkpvdfaklaealGakgarvekadveeleealkealekkgpaliev 153
                    r+s+++   + ++df kla a+G kg+rv+++   el+ alke ++ +gp+l+ev
    CCD26412.1 591 HRYSHTH---QLNPDFMKLADAMGLKGIRVKNQ--GELDGALKEFVDYQGPVLLEV 641
                   *****99...8999***************9999..*******************97 PP

>> TPP_enzyme_M  Thiamine pyrophosphate enzyme, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.3   0.2   5.7e-44   2.6e-40       1     137 []     287     432 ..     287     432 .. 0.96
   2 ?   -4.0   0.0       2.5   1.1e+04      30      46 ..     477     493 ..     472     500 .. 0.78

  Alignments for each domain:
  == domain 1  score: 137.3 bits;  conditional E-value: 5.7e-44
                   HHHHHHHHHH-SSEEEEE-CHHCHT.TGHHHHHHHHHHHT-EEEEEGGGTTSS-TTSTTEEEESGGGSCHHHHHHHHH-SEEEEES-SSSTCCCTTT CS
  TPP_enzyme_M   1 iekaaellkaakrpvilvGggvars.gaseelrelaeklgiPvvttlmgkgvipedhplylgmlglhgskaanealeeaDlvlalGarfddirttgs 96 
                   i++aa+l++ akrpv++vG+g+ ++ +  + l+el+++ +iPv+tt +g g++++++p++l mlg+hg ++an a+++aDlv+alGarfdd r+tg+
    CCD26412.1 287 INRAADLINLAKRPVLYVGNGIMNNpDGPRLLKELSDRAQIPVTTTIQGLGAFDQEDPKSLDMLGMHGCATANLAMQNADLVIALGARFDD-RVTGN 382
                   789*******************9998*****************************************************************.***** PP

                   TTTTTTT-.E........EEEEESSCCCCTTCC--SEEEECTHHHHHHHH CS
  TPP_enzyme_M  97 epefapea.k........iihididpaeigknyqvdlaivgdvketleaL 137
                     +fapea +        iih++i+p++i+k++++++a+ gd++  +++L
    CCD26412.1 383 IAKFAPEArRaaleerggIIHFEISPKNINKVVEAQVAVEGDAASNVSKL 432
                   *******94489999999*************************9988776 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 2.5
                   HHHHHHHHHT-EEEEEG CS
  TPP_enzyme_M  30 elrelaeklgiPvvttl 46 
                   +l + a+ +g Pvv t 
    CCD26412.1 477 KLSKIANGTGKPVVVTT 493
                   68889999999997664 PP

>> CO_dh  CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0     6e-05      0.27       5      48 ..     267     310 ..     264     345 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 6e-05
                 XXXXXXXXXXXXX--EEE--SHHHHHHHHHSSSEEEEE-S--.- CS
       CO_dh   5 kiPfdeaaianskkatleealkvvakmikkakrPllivGpqvlk 48 
                  +P + +  ++ ++a  +e ++ +a +i  akrP+l vG+ + +
  CCD26412.1 267 TLPITSQLKSVAEEAYTMESINRAADLINLAKRPVLYVGNGIMN 310
                 577777777889999999999******************98755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       383  (0.021362); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.41
# Mc/sec: 5033.92
//
Query:       CCD26413.1  [L=480]
Description: hypothetical protein NDAI_0H02390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-77  260.7   0.0    2.3e-77  260.5   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family
  ------ inclusion threshold ------
      0.021   15.3   0.5        6.4    7.3   0.1    2.9  2  DUF5104   Domain of unknown function (DUF5104)


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.5   0.0   2.6e-81   2.3e-77      49     461 ..      40     454 ..      21     455 .. 0.89

  Alignments for each domain:
  == domain 1  score: 260.5 bits;  conditional E-value: 2.6e-81
                 -HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHHHHHHHHHHHH.HSEEEEEE.C...TTEEEEEEEEE-SEEEEEE-SSSCCH CS
      Aldedh  49 paeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidvlryyaelaek.legevlps.s...egklalvrrePlGvvgaItPWNfPll 141
                 ++e R e L+k+ ++++++++e+++++ ++     +e+ + e++  ++ +  +++ ++k ++ + ++  s   +   + v + + G v++I+P+NfP+l
  CCD26413.1  40 DLEFRIEQLKKFYNAIATHEDEIIDALFADYHRAKQESIGlEINPLLNNILHIIKNLRKwMKPTKVSDcSppfMFGSIKVEKIARGNVLVIAPFNFPIL 138
                 66779999***************************************************77774444435654445556666689************** PP

                 HHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTCCHHHHHHH-TTESEEEEES-HHHHHHHHHHHHCTTSEEEEEE---E CS
      Aldedh 142 laawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgsevgealvehpevdkvsftGstevgrkiakaaaknlkrvtlElGGkn 240
                 l++  +a+a+ aGN+vvlKP+e+tp++++l+a+++++ag+Pkg++++v+gs +e+ + l++++++ ++  tGs +vg  +a++aaknl +++lElGGk+
  CCD26413.1 139 LSLVPVAHAIGAGNSVVLKPSEQTPHTSMLIAKILNHAGFPKGLVQIVQGSIDET-SKLIKSKDFSMMFYTGSPKVGSIVAQEAAKNLIPCVLELGGKS 236
                 **************************************************77666.568899************************************* PP

                 EEEE-TTS...HHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHHHHT-.-BS-TTSTT-SB---SSHHHHHHHHHHHHHHHHTTSEEE CS
      Aldedh 241 plivleda...DldkaveaivkgafgnaGQvCiaasrllvqesiydefveklveaakkl.kvgdpldedtdvGPliseaqlekvekyveeakeegakll 335
                 p++++++    +l+ a+++i +g+fgn+GQ+C+a+  l+++es+yde +e  +e +k+   +    ++d ++  +ise+++++  k +e+++   +++ 
  CCD26413.1 237 PTFITKSFsrkNLKTALRRIFFGSFGNSGQICVAPDYLVIHESLYDEAREIAKELLKETfPL---ITKDAEYTHMISERSYNNALKKLENTQGTVYQCE 332
                 ****88765559***************************************99999776355...4456677778***********9998776544444 PP

                 E-TTE.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEEESSHHHHHH.HHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSS.ST--TT CS
      Aldedh 336 lGgereeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvikfkdeeeaie.iaNdteyGLaagvftkdleraervaerleaGnvyiNds.ttgaae 432
                        + +++  ++ Pt++ +++ d++ + eE F P+l++ik+ d+++ ++ i  + +  L  ++f+++ +++ ++  rl+ G + i d+ + + ++
  CCD26413.1 333 S------SLNSDSLCIPPTLIFDCNWDDTTMLEENFSPILPIIKYTDLDKTLDtIIDKYDAPLVQYIFSSSKSEISHILMRLRSGDCIIGDTlIHVGIK 425
                 4......457899*************************************986378999********************************97455555 PP

                 TSEB--CGGGEES-BSHHHHHHHTEEEEE CS
      Aldedh 433 alpfgGvkqSglGreggkegleeytevkt 461
                   pfgG+++Sg+G+ gg +g++++t+ +t
  CCD26413.1 426 DSPFGGIGHSGYGNYGGIYGFNAFTHERT 454
                 57***********************9887 PP

>> DUF5104  Domain of unknown function (DUF5104)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1    0.0039        35       3      40 ..      52      89 ..      50     109 .. 0.87
   2 ?    7.3   0.1   0.00071       6.4      10      55 ..     354     400 ..     350     405 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0039
     DUF5104  3 lealenkDkeaikklFskkalkesddldeeidelidfy 40
                ++a+   + e i +lF+++ +++++++  ei+ l++ +
  CCD26413.1 52 YNAIATHEDEIIDALFADYHRAKQESIGLEINPLLNNI 89
                79999***********************9999998765 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.00071
     DUF5104  10 DkeaikklFskka.lkesddldeeidelidfykGdivsyeeasssse 55 
                 D+ ++++ Fs+ + + +  dld+++d +id+y+  +v+y  +ss+se
  CCD26413.1 354 DTTMLEENFSPILpIIKYTDLDKTLDTIIDKYDAPLVQYIFSSSKSE 400
                 8999999****9999999***************99999876665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.22s 00:00:00.80 Elapsed: 00:00:00.38
# Mc/sec: 3762.67
//
Query:       CCD26414.1  [L=393]
Description: hypothetical protein NDAI_0H02400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
     1e-144  481.8   0.0   1.1e-144  481.7   0.0    1.0  1  Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
    2.6e-05   22.9   0.0    3.9e-05   22.4   0.0    1.2  1  Met_gamma_lyase  Methionine gamma-lyase
    0.00026   20.3   0.1    0.00037   19.8   0.1    1.2  1  Aminotran_1_2    Aminotransferase class I and II
  ------ inclusion threshold ------
      0.015   14.3   0.0      0.023   13.6   0.0    1.4  1  Aminotran_5      Aminotransferase class-V


Domain annotation for each model (and alignments):
>> Cys_Met_Meta_PP  Cys/Met metabolism PLP-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  481.7   0.0  2.5e-148  1.1e-144       1     382 []      10     387 ..      10     387 .. 0.98

  Alignments for each domain:
  == domain 1  score: 481.7 bits;  conditional E-value: 2.5e-148
                      HHHHHHTTTTCHTTTTBSS--B---SBBBESSHHHHCTTCSSS.-SBTTT--HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHTTS-TTEE CS
  Cys_Met_Meta_PP   1 eTllvhagqekdeqtgavavpiyltstykfkdvdeafageekg.yeYsRsgnptrsvleeriaaLeggeaalavssGmaAiaaailallkaGde 93 
                      +T+++hag++ d  +g+v++pi+l++t+k++     +  +  g yeYsRs+np+r++le++iaaLe+g+ +la+ssG a++ a+il+ l + ++
       CCD26414.1  10 ATKAIHAGSHVD-VHGSVIEPISLSTTFKQS-----APAQPIGtYEYSRSQNPNRENLENAIAALENGKYGLAFSSGSATT-AIILQSLPQNSH 96 
                      599*******99.8*****************.....88899888*********************************9998.99********** PP

                      EEEESTSSHHHHHHHHHTHHHTTCEEEEESTTSHHHHHHHCCTTEEEEEEESS-TTTT----HHHHHHHHHHTT..-EEEEEGTTTHTTTS-GG CS
  Cys_Met_Meta_PP  94 ivvsddlYggtqrllkkvlkklgievkfvdtsdleelekaikentklvylEtptnpllkvvDiekiaklakkag..vlvvvDntfaspllqrpl 185
                       ++  d+Yggt+r+++kv++ +g+e++f++   +++l + +kentklv++E+ptnp+lkv+Die+++k +k+ +  +l+vvDntf+sp+l++pl
       CCD26414.1  97 AISIGDVYGGTHRYFTKVANAHGVETTFTND-LIKDLPNLVKENTKLVWIESPTNPTLKVTDIEAVSKSIKSLNkdILLVVDNTFLSPYLSNPL 189
                      ****************************997.7899***********************************99889****************** PP

                      GGT-SEEEEETTTTTTCSSS--EEEEEESSCHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE-T CS
  Cys_Met_Meta_PP 186 klgaDivvhSaTKylgGhsdvvaGvivvkgkeelkkelkflqnalGavlspfdawlllrGlkTLslRlerhqenAlkvAefLekhpkvekvyYp 279
                      ++gaDivvhSaTKy++Ghsdvv Gv+++++ +e+ ++l+flqna+Ga+ spfd+wl++rGlkTL+lR+++++ +A k+AefL+++p+v++v+Yp
       CCD26414.1 190 NFGADIVVHSATKYINGHSDVVLGVLATNN-QEIYERLQFLQNAVGAIPSPFDSWLTHRGLKTLHLRVRQASLTATKIAEFLSTNPNVKAVNYP 282
                      ***************************999.*************************************************************** PP

                      TSTTSTTHHHHHHHSSSG-S..EEEEEESSHHHHHHHHHHC-SSSEECSS-SSSS-EEEETTTTTTTTSCHHHHHHTTS-TTEEEEE--SS-HH CS
  Cys_Met_Meta_PP 280 glpshpqhelakkqlkgagg..vlsFelkseeekakkfvdnlklfslaeslGgveslielpasmthasipkeereaagvtddliRlsvGiEdvd 371
                      glp+h++++++kkq+++a g  ++sF++++++e+a+kf ++++lf+laeslGg+esl+e+pa+mth  ipke rea+gv ddliRlsvGiEd+ 
       CCD26414.1 283 GLPTHENYDIVKKQHREALGggMISFRINGGSEAAAKFSSSTRLFTLAESLGGIESLLEVPAVMTHGGIPKESREASGVYDDLIRLSVGIEDAG 376
                      ****************986667************************************************************************ PP

                      HHHHHHHHHHH CS
  Cys_Met_Meta_PP 372 DliaDlkqale 382
                      Dl++D+kqale
       CCD26414.1 377 DLLDDIKQALE 387
                      *********96 PP

>> Met_gamma_lyase  Methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   8.7e-09   3.9e-05     147     239 ..     131     218 ..     119     236 .. 0.83

  Alignments for each domain:
  == domain 1  score: 22.4 bits;  conditional E-value: 8.7e-09
  Met_gamma_lyase 147 avkeaikektkliliqrskGyserkslsieeieeiiklvkeinedvivfvdncyGefveekePtevGadliaGsliknpGGgiaktGGyiaGk 239
                       + + +ke+tkl+ i       + ++l++ +ie + k++k++n+d+++ vdn +       +P + Gad++  s  k + G    + G +a +
       CCD26414.1 131 DLPNLVKENTKLVWIESP----TNPTLKVTDIEAVSKSIKSLNKDILLVVDNTFLSP-YLSNPLNFGADIVVHSATKYINGHSDVVLGVLATN 218
                      556778999999999865....5799**************************98653.3578***************9999766666666655 PP

>> Aminotran_1_2  Aminotransferase class I and II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.1   8.3e-08   0.00037     108     217 ..     113     213 ..      49     219 .. 0.68

  Alignments for each domain:
  == domain 1  score: 19.8 bits;  conditional E-value: 8.3e-08
                    HHHHHTTSEEEEEEBEETTTTEE-.HHHHHHHHTTHHCTTETEEEEEEESS-TTT--B--HHHHHHHHHHHHHTTEEEEEEETTTTCBSSSS.HTH CS
  Aminotran_1_2 108 nilrlsggevvryplyseedfhld.lealeealkeapegnkktkvilvesphNPtGtvatleeleklldlakkynlllfvDeaYagfvfgsl.dav 201
                    ++++++g+e             +d +++l +++ke       tk++++esp NPt +v + e + k ++  +k  +ll+vD ++   ++ ++  + 
     CCD26414.1 113 KVANAHGVETTFT---------NDlIKDLPNLVKE------NTKLVWIESPTNPTLKVTDIEAVSKSIKSLNK-DILLVVDNTFLSPYLSNPlNFG 192
                    4444444433333.........3314666666666......67*****************************7.********99887777776665 PP

                    HH..HGGSTTSTT...EEEEE CS
  Aminotran_1_2 202 at..ranveeepn...llivg 217
                    a   ++ + +++n   ++++g
     CCD26414.1 193 ADivVHSATKYINghsDVVLG 213
                    556677777777766666665 PP

>> Aminotran_5  Aminotransferase class-V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.0   5.2e-06     0.023     129     202 ..     129     204 ..      59     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 5.2e-06
                  GGGHHHH--TTEEEEEEESBETTTTEB--HHHHHHHHHH..TT-EEEEE-TTTTTTS---HHHHTESEEEEETTT.T CS
  Aminotran_5 129 ldelekllnektklvaithvsnvtGtiqpveeigklakk..kgalvlvDaaqavghipidvkklgvDflafsghK.l 202
                  +++l +l++e+tklv i    n t  + ++e++ k +k   k++l++vD +   +    +  ++g+D+++ s+ K +
   CCD26414.1 129 IKDLPNLVKENTKLVWIESPTNPTLKVTDIEAVSKSIKSlnKDILLVVDNTFLSPYL-SNPLNFGADIVVHSATKyI 204
                  67889999******************************9855*******97655544.455579*********9944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       448  (0.0249875); expected 358.6 (0.02)
Passed bias filter:                      415  (0.0231469); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.38
# Mc/sec: 3066.71
//
Query:       CCD26415.1  [L=141]
Description: hypothetical protein NDAI_0H02410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      1e-33  115.1   0.1    3.6e-33  113.3   0.0    1.7  2  Ribosomal_S19  Ribosomal protein S19
  ------ inclusion threshold ------
      0.091   12.8   0.0       0.12   12.5   0.0    1.1  1  FliH           Flagellar assembly protein FliH


Domain annotation for each model (and alignments):
>> Ribosomal_S19  Ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.16   1.4e+03      24      35 ..       6      17 ..       2      26 .. 0.79
   2 !  113.3   0.0     4e-37   3.6e-33       1      81 []      42     127 ..      42     127 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.16
                   -----EEES-TT CS
  Ribosomal_S19 24 kkkevikthsRd 35
                    kk+v kths +
     CCD26415.1  6 AKKRVFKTHSYR 17
                   488999999865 PP

  == domain 2  score: 113.3 bits;  conditional E-value: 4e-37
                    .HHHSS.TTCCCHHHHHHHHHH....TS-----EEES-TT-B--GGGTT-EEEEE-SSSEEEEE--CCCTTSBCGGGT-SS----S CS
  Ribosomal_S19   1 rslkkg.pfvqesllkkvrkak....aekkkevikthsRdstIlPemvgltvgVynGktfvpveikeemvGhkLgEFspTrkpvkh 81 
                    r++ +g + + + l+kk+r+ak    +++k+ v++th+R+++I+Pem+g++vgVynGk f++vei++em Gh+LgEFs+T++pv+h
     CCD26415.1  42 RRFARGlSSKPAGLMKKLRAAKlaapENEKPAVVRTHLRNMIIVPEMIGSVVGVYNGKVFNQVEIRPEMLGHYLGEFSITYTPVRH 127
                    5677888899999*********9776666*******************************************************99 PP

>> FliH  Flagellar assembly protein FliH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   1.3e-05      0.12      18      90 ..      21      93 ..      17     108 .. 0.90

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 1.3e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHHS--S-HHHHHHHHHHHHTTSCHHHS-EEEEE-HHHHHHHHHHHHHHH CS
        FliH 18 laeldeeledqlvqlaldiarkvikkelsvdpekilalvrealaklpvdekkitlrvnpdDlelvrehlgeel 90
                la+l e   ++ v+la + +r    + ls +p+ +++ +r+a  + p  ek +++r + +++ +v e +g++ 
  CCD26415.1 21 LAKLLEMSTEDFVKLAPARVRRRFARGLSSKPAGLMKKLRAAKLAAPENEKPAVVRTHLRNMIIVPEMIGSVV 93
                7889999999*******************************************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       294  (0.016398); expected 358.6 (0.02)
Passed bias filter:                      272  (0.015171); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.39
# Mc/sec: 1094.04
//
Query:       CCD26416.1  [L=630]
Description: hypothetical protein NDAI_0H02420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.5e-47  160.9   2.8    4.5e-47  160.9   2.8    3.4  2  Sds3      Sds3-like


Domain annotation for each model (and alignments):
>> Sds3  Sds3-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -28.3  36.1         1   1.8e+04     132     198 ..      33     142 ..       4     358 .. 0.67
   2 !  160.9   2.8   2.5e-51   4.5e-47       1     177 [.     425     624 ..     425     626 .. 0.90

  Alignments for each domain:
  == domain 1  score: -28.3 bits;  conditional E-value: 1
        Sds3 132 g......lanesatste...pvelltdrrslr.................................tnsdsdflqelsd.leeLqallfggepgkenkek 187
                 +       +n++a +t+   ++e +++ ++l                                   +  sd lqe+ + +  L +l+ +++++++n   
  CCD26416.1  33 SskpsieINNSNAATTTtinTAENGSNVKKLEddeesalsnidfnnqelnnlnlseycissdadtEKMGSDILQEIDEtHPRLIQLVNNNNNNNSNDAT 131
                 033444422222222222345555555555555555555444444444444445555544444443334444444444777888876665555333333 PP

        Sds3 188 kkrkastrest 198
                  k+++ +++++
  CCD26416.1 132 IKNNNDNDDDN 142
                 33333333332 PP

  == domain 2  score: 160.9 bits;  conditional E-value: 2.5e-51
        Sds3   1 lleklskiessFaelRDklYrerLteLqteltllqqGthpellrklrdleeerDaeLkrlrlreeyqlkriekefkadiekakqeheklvkllkeklye 99 
                 +l+++++ie +FaelR+klY+++L +L+tel+++++G+hpel+ +++++   rD++L+++++r++y+l++i++e++a++++++q+h+k+v+++++kl++
  CCD26416.1 425 ALKEITDIEYKFAELRQKLYENKLLKLETELQMCLEGSHPELQSYYQKIAAIRDYKLRKAYQRQKYELQCIDRETRATRTFIHQDHYKKVNDIRNKLLN 523
                 5789*********************************************************************************************** PP

        Sds3 100 elekkikrLkeeklllDla.nansl...kktrshta.......g................lanesatste....pvelltdrrslrtnsdsdflqelsd 167
                 ++++ ++++++e+++lD++  + s+    kt+++t+       g                ++  +++++     ++e++ dr++l+        +e+sd
  CCD26416.1 524 DTTETWYDINRERRDLDVMvPDVSYhvpIKTAEKTLscitgyaGpaqlklpgealsedlaCEGVNFRYKGnpvdKLEVIVDRMRLN--------NEISD 614
                 *****************9313455599988888888777655516667788888888988777777777778889***********........***** PP

        Sds3 168 leeLqallfg 177
                 le+++++l++
  CCD26416.1 615 LEGIKNILMH 624
                 *******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2381  (0.132802); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.08u 0.34s 00:00:01.42 Elapsed: 00:00:00.51
# Mc/sec: 3749.09
//
Query:       CCD26417.1  [L=299]
Description: hypothetical protein NDAI_0H02430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    8.7e-91  303.1  13.1      1e-90  302.9  13.1    1.1  1  Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family
  ------ inclusion threshold ------
      0.036   13.7   2.2       0.62    9.7   0.6    2.6  2  SPW              SPW repeat


Domain annotation for each model (and alignments):
>> Gpr1_Fun34_YaaH  GPR1/FUN34/yaaH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.9  13.1   1.2e-94     1e-90       1     206 [.      87     292 ..      87     293 .. 0.99

  Alignments for each domain:
  == domain 1  score: 302.9 bits;  conditional E-value: 1.2e-94
  Gpr1_Fun34_YaaH   1 fggtlnpglapvpkrkfaNPaPlgllafalttfvlslvnlgargitepnvvvglalfyGGlvqllaGiwefavgntFgatalssYGgFwlsyaa 94 
                      fggtlnpgl+p++++kfaNPaPlgl++falttf+ +++n++a+gi++ nv+vg+a+fyGGlvql+aGiwe+a +ntFg tal+sYGg+w+sy+a
       CCD26417.1  87 FGGTLNPGLSPPSHHKFANPAPLGLCGFALTTFLSGMFNARAQGIQVHNVIVGCAIFYGGLVQLIAGIWEIALENTFGGTALCSYGGYWMSYGA 180
                      89******************************************************************************************** PP

  Gpr1_Fun34_YaaH  95 ilipgfgilaaYeedeeelnnalglyllgwfiftfllllatlrstvalfllfffldltflllaigeltgsakvlkAggvfgiiaaflawYnala 188
                      i+ip+fgil+aY+ede++++na+g+yll w iftf l+++tl+stv++++lff++ lt+ll +i+e+tgs kv++Agg++gii++flawYna+ 
       CCD26417.1 181 IYIPWFGILDAYKEDESDFANAMGIYLLSWSIFTFGLTFCTLKSTVMFSTLFFLVALTYLLNSISEFTGSPKVQRAGGIVGIIVSFLAWYNAYT 274
                      ********************************************************************************************** PP

  Gpr1_Fun34_YaaH 189 glatkensyftlpviplp 206
                      g+a++ensy+++ +++lp
       CCD26417.1 275 GVANRENSYIVITPLQLP 292
                      ****************99 PP

>> SPW  SPW repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.6   6.9e-05      0.62      24      46 ..     128     151 ..     120     155 .. 0.83
   2 ?    2.6   0.0     0.011     1e+02      32      45 ..     259     272 ..     250     275 .. 0.90

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 6.9e-05
         SPW  24 t.gaawnnvivGavvavLalafaa 46 
                 + g  ++nvivG++++  +l+ + 
  CCD26417.1 128 AqGIQVHNVIVGCAIFYGGLVQLI 151
                 44899***********99998775 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.011
         SPW  32 ivGavvavLalafa 45 
                 ivG++v +La + a
  CCD26417.1 259 IVGIIVSFLAWYNA 272
                 9*********8876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       760  (0.0423894); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2226.58
//
Query:       CCD26418.1  [L=297]
Description: hypothetical protein NDAI_0H02440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-09   35.1   0.1      2e-08   34.1   0.1    1.6  1  SNARE     SNARE domain
  ------ inclusion threshold ------
       0.32   11.1   4.2       0.49   10.5   4.2    1.2  1  CAML      Calcium signal-modulating cyclophilin ligand
        0.8    9.0   3.8       0.29   10.4   0.7    1.7  2  UPF0515   Uncharacterised protein UPF0515


Domain annotation for each model (and alignments):
>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   3.3e-12     2e-08       1      53 []     244     296 ..     244     296 .. 0.98

  Alignments for each domain:
  == domain 1  score: 34.1 bits;  conditional E-value: 3.3e-12
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   1 emvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                 e+++++++ +en   n++ra+++L  ++k++++n+ + +i llil++++l+++
  CCD26418.1 244 EVLNDLENLIENGGRNLDRAKRRLEIFEKTARDNGPCSIIVLLILILFFLLIV 296
                 799************************************************97 PP

>> CAML  Calcium signal-modulating cyclophilin ligand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.2   8.3e-05      0.49      14     150 ..      77     213 ..      71     224 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 8.3e-05
        CAML  14 LllnseerlnrivGfakpeaedeeeeesevesklqldldkleslslssvskrvllgdssgakdksksstaerkgsklpdkkdsltkesseddsaelrkr 112
                 Ll+   + ++   G+++++++  +++  e +++l+l+ ++ e  + + +  ++ ++d     +k+     e+  ++ +  +d+  ++  +dd a+ r++
  CCD26418.1  77 LLNRIPKEMDLQNGIENNNSNTIDTSLYEFNKQLKLEEEEEEEEEKTISPLKSSINDGP-VIKKKVRLNDEITYKEYTPYTDNPDHDDDDDDDAGNRNK 174
                 55555566777779999999988888888999999998887777777777666677754.444554777888888899999999999************ PP

        CAML 113 ergelssdeasrsprrglekyLsrfdeamklr.kqLane 150
                   g+ ++ + s+ ++  l++y+   +e +  + +qL+++
  CCD26418.1 175 LMGNATDTTSSNNTKDDLQSYMVSNEEIFARQqQQLMEQ 213
                 *******9**************99988775440455554 PP

>> UPF0515  Uncharacterised protein UPF0515
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.7   4.9e-05      0.29      38     101 ..      88     151 ..      68     161 .. 0.81
   2 ?   -1.4   0.1       0.2   1.2e+03      52      71 ..     197     214 ..     155     251 .. 0.51

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 4.9e-05
     UPF0515  38 dldeedkaalkndavvrnvveklkaeeqkepskdrdikevakslrvlpLteknlrlfddaqknl 101
                 + + e++++ + d+   +  ++lk ee++e+++++ i+ + +s++  p+++k +rl d+++++ 
  CCD26418.1  88 QNGIENNNSNTIDTSLYEFNKQLKLEEEEEEEEEKTISPLKSSINDGPVIKKKVRLNDEITYKE 151
                 3334566666677788888999999*********************************998765 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.2
     UPF0515  52 vvrnvveklkaeeqkepskd 71 
                 v ++  e +  ++q+ +++d
  CCD26418.1 197 VSNE--EIFARQQQQLMEQD 214
                 1111..11112222333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1713  (0.0955435); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.26s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2150.92
//
Query:       CCD26419.1  [L=467]
Description: hypothetical protein NDAI_0H02450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.1e-23   80.9   0.1      2e-22   79.7   0.0    1.7  2  HhH-GPD   HhH-GPD superfamily base excision DNA repair protei
    2.3e-06   27.2   0.0      1e-05   25.1   0.0    2.1  2  HHH       Helix-hairpin-helix motif
  ------ inclusion threshold ------
      0.061   13.5   0.1      0.061   13.5   0.1    1.8  2  Spot_14   Thyroid hormone-inducible hepatic protein Spot 14
       0.13   12.9   0.0       0.69   10.6   0.0    2.2  2  HHH_5     Helix-hairpin-helix domain


Domain annotation for each model (and alignments):
>> HhH-GPD  HhH-GPD superfamily base excision DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.8   8.2e+03      12      24 ..      17      29 ..      11      51 .. 0.56
   2 !   79.7   0.0   4.4e-26     2e-22       2     108 .]     165     311 ..     164     311 .. 0.98

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.8
                HHHHHHHHHHHHH CS
                xxxxxxxxxxxxx RF
     HhH-GPD 12 eranriierlfer 24
                 +++++++++ ++
  CCD26419.1 17 TTIKKVTKKVTKK 29
                4444444444444 PP

  == domain 2  score: 79.7 bits;  conditional E-value: 4.4e-26
                 HHHHHTTS-HHHHHHHHHHHHHHHS.......HCSHHHHHHSHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH........................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........................... RF
     HhH-GPD   2 sailsqqtsderanriierlferfg.......fptpedladadeekLrelirelGfyrrKakyikelArilv........................... 66 
                 s++ls+qt+de++++++ ++++ +        ++t+e ++++de+ + eli+++Gf++rKa  ik  A+++                            
  CCD26419.1 165 SVMLSAQTKDEVTAKAMYNIMRYCIdelgipqGLTLEGILQMDEDVIDELIKSVGFHTRKAHFIKMSAEMIRtnfqsdvptnipdllslpgvgpkmayl 263
                 799************************************************************************************************ PP

                 ......S-SSS--TTSHHHHHHHHHHTTSSSS.TTHHHHHHHHHHHHHT CS
                 ......xxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxx RF
     HhH-GPD  67 ......gkpdvlivvDvhvrrilkrlrsikek.ktkkkvekkleellep 108
                       gk++ +i+vDvhv+r++k +++++++ k++++++k+l+ +l+p
  CCD26419.1 264 tlqkawGKME-GICVDVHVHRLCKLFKWVDPNsKNPEQTRKELQSWLPP 311
                 *******998.*********************9**********999886 PP

>> HHH  Helix-hairpin-helix motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   2.3e-09     1e-05       2      26 ..     239     263 ..     238     266 .. 0.91
   2 ?   -2.2   0.0       1.1   4.8e+03       8      17 ..     300     310 ..     299     310 .. 0.80

  Alignments for each domain:
  == domain 1  score: 25.1 bits;  conditional E-value: 2.3e-09
                 HHHHHTSSHHHHHTSTT-SHHHHHH CS
         HHH   2 leglipasreeLlalPGVGpktAea 26 
                 +++++p ++ +Ll+lPGVGpk+A  
  CCD26419.1 239 FQSDVPTNIPDLLSLPGVGPKMAYL 263
                 7899*******************75 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
                 SSHHHHHT.ST CS
         HHH   8 asreeLla.lP 17 
                  +r+eL++ lP
  CCD26419.1 300 QTRKELQSwLP 310
                 599***98666 PP

>> Spot_14  Thyroid hormone-inducible hepatic protein Spot 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       2.4   1.1e+04     136     137 ..      28      29 ..       7      54 .. 0.53
   2 ?   13.5   0.1   1.4e-05     0.061      88     143 ..     344     399 ..     328     402 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 2.4
                 HH CS
     Spot_14 136 ek 137
                 +k
  CCD26419.1  28 KK 29 
                 11 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 1.4e-05
                 --------------------T.THHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     Spot_14  88 skkkkaseasllelsekeeeeeeeeeedlekqfhyHlsgLhtvLskLTekAneltn 143
                    k + +  +le ++k++ ++  e ++le+ f+ H++   +  + LT++An+l +
  CCD26419.1 344 DDVKDEETGIVLEKEKKKKTNDYLEITQLEQGFRSHMTNYTSWVKYLTTNANNLSK 399
                 2335555666777777777777888899************************9975 PP

>> HHH_5  Helix-hairpin-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.66     3e+03      25      51 ..     199     228 ..     191     233 .. 0.67
   2 ?   10.6   0.0   0.00015      0.69       3      15 ..     249     261 ..     247     287 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.66
                 SHHHHHHS-...HHHHHTSTTS-HHHHHHH CS
       HHH_5  25 svedlaaad...veeLakipGiGkktAeri 51 
                 ++e ++++d   ++eL k  G+  ++A  i
  CCD26419.1 199 TLEGILQMDedvIDELIKSVGFHTRKAHFI 228
                 788887776333477888778776666655 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00015
                 HHHTSTT--HHHH CS
       HHH_5   3 eLlsvsGiGpktA 15 
                 +Lls++G+Gpk+A
  CCD26419.1 249 DLLSLPGVGPKMA 261
                 89**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1801  (0.100452); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.27s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3467.74
//
Query:       CCD26420.1  [L=621]
Description: hypothetical protein NDAI_0H02460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.2e-40  132.7  13.5    0.00059   19.9   0.1   13.4 13  HEAT           HEAT repeat
    4.6e-28   97.4   1.1    2.9e-09   37.2   0.0    7.8  7  HEAT_2         HEAT repeats
    1.8e-14   54.1   4.0    0.00065   20.2   0.0    8.5  9  Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
    8.6e-07   29.3   6.4          1    9.9   0.1    8.1 10  HEAT_EZ        HEAT-like repeat
    3.3e-06   27.3  13.2     0.0021   18.1   1.9    5.4  4  Cnd1           non-SMC mitotic condensation complex subunit 1
    0.00025   21.3   3.0       0.26   11.6   0.2    3.1  2  M11L           Apoptosis regulator M11L like
    0.00061   18.7   0.8    0.00061   18.7   0.8    4.3  6  API5           Apoptosis inhibitory protein 5 (API5)
  ------ inclusion threshold ------
      0.023   15.0   0.0        1.8    9.0   0.0    3.2  3  TAF6_C         TAF6 C-terminal HEAT repeat domain
      0.058   13.3   0.6         10    6.0   0.0    2.6  2  GatB_Yqey      GatB domain
       0.23   11.6   4.0         12    6.1   0.1    4.9  6  Arm            Armadillo/beta-catenin-like repeat


Domain annotation for each model (and alignments):
>> HEAT  HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0095        17       1      30 [.      61      90 ..      61      91 .. 0.94
   2 !    7.7   0.0    0.0027       4.9       1      29 [.     100     128 ..     100     130 .. 0.90
   3 !    6.5   0.0    0.0065        12       7      29 ..     184     206 ..     178     208 .. 0.82
   4 ?    4.4   0.0     0.032        57       4      30 ..     226     252 ..     222     253 .. 0.83
   5 !   15.6   0.0   7.9e-06     0.014       1      29 [.     265     293 ..     265     295 .. 0.86
   6 !    7.3   0.0    0.0037       6.7       1      28 [.     305     332 ..     305     335 .. 0.84
   7 !   13.8   0.1   2.9e-05     0.053       1      31 []     345     375 ..     345     375 .. 0.96
   8 !   19.9   0.1   3.3e-07   0.00059       1      25 [.     384     408 ..     384     414 .. 0.91
   9 !   15.0   0.0   1.2e-05     0.021       1      30 [.     423     452 ..     423     453 .. 0.90
  10 !   15.2   0.0   1.1e-05     0.019       4      30 ..     465     491 ..     462     492 .. 0.91
  11 ?   -0.5   0.0       1.2   2.1e+03      17      30 ..     519     532 ..     514     533 .. 0.86
  12 !   10.7   0.0   0.00029      0.52       1      23 [.     542     564 ..     542     572 .. 0.92
  13 ?    4.6   0.0     0.026        47       3      24 ..     591     612 ..     591     615 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0095
                HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT  1 llPlllkllsDpspeVReaAakaLgalaev 30
                l+P+l++  +D++ eV +  a+ Lg+++++
  CCD26420.1 61 LIPFLVEVAQDDEDEVFAVLAEELGQFVPF 90
                79************************9976 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0027
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 llP+l  l s ++  VRe A+ +L  +a+
  CCD26420.1 100 LLPPLEILASTEETLVREKAVDSLNIIAK 128
                 799999988999999**********9998 PP

  == domain 3  score: 6.5 bits;  conditional E-value: 0.0065
                 HHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   7 kllsDpspeVReaAakaLgalae 29 
                 +l +D+ p VR+a+ k+L +l+ 
  CCD26420.1 184 HLDQDDTPMVRRAVGKNLPTLVD 206
                 4449**************99876 PP

  == domain 4  score: 4.4 bits;  conditional E-value: 0.032
                 HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   4 lllkllsDpspeVReaAakaLgalaev 30 
                 ++++ ++D+  +V    + +L  +a++
  CCD26420.1 226 IFQNIINDNQDSVKFLGVDCLISIAKF 252
                 455557******************997 PP

  == domain 5  score: 15.6 bits;  conditional E-value: 7.9e-06
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalae 29 
                 ll+  +kl++D++++VR++Aa  + +l +
  CCD26420.1 265 LLNSAIKLINDEAWRVRYMAADRFEELTK 293
                 57777999*************99988877 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0037
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgala 28 
                 l+ ++l+l+ D++ +VR+a  k +  +a
  CCD26420.1 305 LIEPFLNLCDDNEGDVRKAISKQIPGFA 332
                 6889***************988776666 PP

  == domain 7  score: 13.8 bits;  conditional E-value: 2.9e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHCS CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaevl 31 
                 +lP++++l +D+  +VR++ a+ + ++aevl
  CCD26420.1 345 ILPIIQNLSMDEMEDVRSSLALKVNDIAEVL 375
                 89**************************985 PP

  == domain 8  score: 19.9 bits;  conditional E-value: 3.3e-07
                 HHHHHHHHHT-SSHHHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAakaLg 25 
                 llP+ll++l+D++peVR + + +L 
  CCD26420.1 384 LLPILLNMLRDECPEVRLNIISNLK 408
                 89*****************999997 PP

  == domain 9  score: 15.0 bits;  conditional E-value: 1.2e-05
                 HHHHHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   1 llPlllkllsDpspeVReaAakaLgalaev 30 
                 llP++ +l +D +++VR a ++ +  la++
  CCD26420.1 423 LLPAITELAKDGNWRVRLAIIEYIPILAKQ 452
                 89******************9998888775 PP

  == domain 10  score: 15.2 bits;  conditional E-value: 1.1e-05
                 HHHHHHT-SSHHHHHHHHHHHHHHHHC CS
        HEAT   4 lllkllsDpspeVReaAakaLgalaev 30 
                 l+l++l D+  +VR+aA+++L +l e+
  CCD26420.1 465 LCLSWLWDTVYSVRDAAVNNLSKLTEI 491
                 7899*******************9986 PP

  == domain 11  score: -0.5 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHHHC CS
        HEAT  17 ReaAakaLgalaev 30 
                 R + + +L+al++v
  CCD26420.1 519 RFTLLSTLTALCKV 532
                 788899******98 PP

  == domain 12  score: 10.7 bits;  conditional E-value: 0.00029
                 HHHHHHHHHT-SSHHHHHHHHHH CS
        HEAT   1 llPlllkllsDpspeVReaAaka 23 
                 +lP++++l +D+ p++R ++ak+
  CCD26420.1 542 ILPFIVNLSTDSVPNIRFNVAKS 564
                 89******************986 PP

  == domain 13  score: 4.6 bits;  conditional E-value: 0.026
                 HHHHHHHT-SSHHHHHHHHHHH CS
        HEAT   3 PlllkllsDpspeVReaAakaL 24 
                 P l+kl++D++ +V + A ++L
  CCD26420.1 591 PSLQKLCEDDDVDVKYFANESL 612
                 88************99986665 PP

>> HEAT_2  HEAT repeats
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.3   1.2e-07   0.00022       2      87 ..      24     123 ..      23     124 .. 0.76
   2 !   10.7   0.1    0.0003      0.54      33      69 ..     101     137 ..      94     156 .. 0.75
   3 ?    0.9   0.0      0.34   6.1e+02      31      51 ..     173     197 ..     141     202 .. 0.65
   4 !   13.1   0.0   5.1e-05     0.092      26      83 ..     259     324 ..     227     329 .. 0.74
   5 !    8.8   0.0    0.0011         2       2      71 ..     307     388 ..     306     390 .. 0.83
   6 !   37.2   0.0   1.6e-12   2.9e-09       2      87 ..     386     485 ..     381     486 .. 0.85
   7 !    9.1   0.0   0.00093       1.7      30      78 ..     540     604 ..     521     613 .. 0.65

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 1.2e-07
      HEAT_2   2 daLlqalendpdpevrraairaLg........rignpealpaLvellededpavRraaaeaLgai....gdpe....alpaLkellddddddvvReaAa 84 
                 ++L+  l ++ d  +r  a + L         +   +e++p Lve+++d++ +v +  ae Lg++    g  e     lp L+ +l+++++ +vRe+A+
  CCD26420.1  24 ALLMDEL-KHDDVSTRVDAMKKLDkialalgpQRTRDELIPFLVEVAQDDEDEVFAVLAEELGQFvpfvGGAEfapiLLPPLE-ILASTEETLVREKAV 120
                 5788888.8999999999999999555544444444499************************98777766551111555555.6778999******** PP

      HEAT_2  85 eaL 87 
                  +L
  CCD26420.1 121 DSL 123
                 998 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0003
      HEAT_2  33 lpaLvellededpavRraaaeaLgaigdpealpaLke 69 
                 lp L  l+++e++ vR+ a+++L  i+ + + ++L+e
  CCD26420.1 101 LPPLEILASTEETLVREKAVDSLNIIAKDLSDQLLLE 137
                 78899999*****************985544444443 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.34
      HEAT_2  31 ealpaLvell....ededpavRraa 51 
                  +++ L++l     +d+ p+vRra+
  CCD26420.1 173 NLRKDLFQLYyhldQDDTPMVRRAV 197
                 5555555555443456668888877 PP

  == domain 4  score: 13.1 bits;  conditional E-value: 5.1e-05
      HEAT_2  26 rignpealpaLvellededpavRraaaeaLgai.........gdpealpaLkellddddddvvReaA 83 
                 + +++e+l+  ++l++de ++vR++aa+   ++          ++e ++  + l+d d++ +vR a+
  CCD26420.1 259 QTHSQELLNSAIKLINDEAWRVRYMAADRFEELtkqfsnnpnHLNELIEPFLNLCD-DNEGDVRKAI 324
                 6788999999999*************987766633344333225888888888885.6777777765 PP

  == domain 5  score: 8.8 bits;  conditional E-value: 0.0011
      HEAT_2   2 daLlqalendpdpevrraairaLg....rignp.....ealpaLvellededpavRraaaeaLgaigd....pealpaLkell 71 
                 +++l++  +d + +vr+a+ +++      i+n+     ++lp++ +l  de ++vR   a     i++    ++a+++L+ +l
  CCD26420.1 307 EPFLNLC-DDNEGDVRKAISKQIPgfakLINNQtivltKILPIIQNLSMDEMEDVRSSLALKVNDIAEvltkDQAIEHLLPIL 388
                 7889988.999************97776566667777788*********************9999984444588999999877 PP

  == domain 6  score: 37.2 bits;  conditional E-value: 1.6e-12
      HEAT_2   2 daLlqalendpdpevrraairaLg........rignpealpaLvellededpavRraaaeaL....gaigd...pealpaLkellddddddvvReaAae 85 
                 + Ll+ l +d++pevr ++i +L         ++ ++++lpa++el++d +++vR a++e++     ++g    +  l+ L+ +++ d+++ vR aA+ 
  CCD26420.1 386 PILLNML-RDECPEVRLNIISNLKiindvigiELLSESLLPAITELAKDGNWRVRLAIIEYIpilaKQLGVeffDHQLSELCLSWLWDTVYSVRDAAVN 483
                 6789999.8***************9999998888999***********************994443355544555578888888888999999***998 PP

      HEAT_2  86 aL 87 
                 +L
  CCD26420.1 484 NL 485
                 87 PP

  == domain 7  score: 9.1 bits;  conditional E-value: 0.00093
      HEAT_2  30 pealpaLvellededpavRraaaeaLgai.......gdpe...........alpaLkellddddddv 78 
                  e+lp +v+l +d+ p++R ++a++   i          +             p+L++l+ ddd+dv
  CCD26420.1 540 SEILPFIVNLSTDSVPNIRFNVAKSYPIIietlredE--DktdytplitttIDPSLQKLCEDDDVDV 604
                 488*********************9865544444321..2333444444335577777777766654 PP

>> Vac14_Fab1_bd  Vacuolar 14 Fab1-binding region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.28     5e+02       9      43 ..      44      76 ..      36      88 .. 0.75
   2 ?   -0.9   0.0       1.4   2.6e+03      36      63 ..     108     135 ..      94     149 .. 0.69
   3 ?    2.6   0.0      0.11     2e+02      28      59 ..     223     254 ..     204     257 .. 0.76
   4 !   20.2   0.0   3.6e-07   0.00065      21      88 ..     258     324 ..     245     326 .. 0.88
   5 !   14.6   0.0   2.1e-05     0.037      22      88 ..     299     364 ..     290     373 .. 0.90
   6 ?    2.0   0.0      0.17   3.1e+02      21      51 ..     377     407 ..     363     420 .. 0.74
   7 ?    5.1   0.0     0.019        34      24      88 ..     419     481 ..     406     489 .. 0.78
   8 ?    2.0   0.0      0.18   3.2e+02      22      51 ..     536     565 ..     520     577 .. 0.72
   9 !    8.0   0.1    0.0024       4.3      27      55 ..     587     616 ..     576     620 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.28
  Vac14_Fab1_bd  9 gLaavaialekkikeyleeivkpvlkcfsDkdsrv 43
                    L  +a+al+   ++  +e+++ ++++ +D++++v
     CCD26420.1 44 KLDKIALALGP--QRTRDELIPFLVEVAQDDEDEV 76
                   55566666665..67889************99987 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 1.4
  Vac14_Fab1_bd  36 fsDkdsrvRyyacEslyniakvakgevl 63 
                     s +++ vR  a++sl  iak + +++l
     CCD26420.1 108 ASTEETLVREKAVDSLNIIAKDLSDQLL 135
                    45567779999999**999998887765 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.11
  Vac14_Fab1_bd  28 ivkpvlkcfsDkdsrvRyyacEslyniakvak 59 
                    i ++  ++++D+++ v++  +++l  iak  +
     CCD26420.1 223 ISNIFQNIINDNQDSVKFLGVDCLISIAKFFN 254
                    33334456899999**************9765 PP

  == domain 4  score: 20.2 bits;  conditional E-value: 3.6e-07
  Vac14_Fab1_bd  21 ikeyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksga 88 
                     +++ +e++++ +k ++D+  rvRy a++ +  ++k+  ++  ++lne+ + + +l+ D++ +v+++ 
     CCD26420.1 258 DQTHSQELLNSAIKLINDEAWRVRYMAADRFEELTKQFSNN-PNHLNELIEPFLNLCDDNEGDVRKAI 324
                    5678899******************************9887.59*********************986 PP

  == domain 5  score: 14.6 bits;  conditional E-value: 2.1e-05
  Vac14_Fab1_bd  22 keyleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksga 88 
                     ++l+e+++p l+ ++D++  vR   +  +   ak ++++ + +l++i+ ++ +l+ D+ e+v+s+ 
     CCD26420.1 299 PNHLNELIEPFLNLCDDNEGDVRKAISKQIPGFAKLINNQTI-VLTKILPIIQNLSMDEMEDVRSSL 364
                    5789**********************************9998.5899*****************975 PP

  == domain 6  score: 2.0 bits;  conditional E-value: 0.17
  Vac14_Fab1_bd  21 ikeyleeivkpvlkcfsDkdsrvRyyacEsl 51 
                     ++ +e++++++l++++D+  +vR   +  l
     CCD26420.1 377 KDQAIEHLLPILLNMLRDECPEVRLNIISNL 407
                    5788999************999998766655 PP

  == domain 7  score: 5.1 bits;  conditional E-value: 0.019
  Vac14_Fab1_bd  24 yleeivkpvlkcfsDkdsrvRyyacEslyniakvakgevlkllneifdalvklvaDsdesvksga 88 
                      e++++ + +  +D + rvR   +E++  +ak++  e++ +  ++ +   + + D+  sv+++a
     CCD26420.1 419 LSESLLPAITELAKDGNWRVRLAIIEYIPILAKQLGVEFFDH--QLSELCLSWLWDTVYSVRDAA 481
                    6688999********************999999998877765..344444556667777777765 PP

  == domain 8  score: 2.0 bits;  conditional E-value: 0.18
  Vac14_Fab1_bd  22 keyleeivkpvlkcfsDkdsrvRyyacEsl 51 
                    k + +ei++ +++  +D+   +R+ ++ s 
     CCD26420.1 536 KVIASEILPFIVNLSTDSVPNIRFNVAKSY 565
                    446789999999999999999999887765 PP

  == domain 9  score: 8.0 bits;  conditional E-value: 0.0024
  Vac14_Fab1_bd  27 eivkp.vlkcfsDkdsrvRyyacEslynia 55 
                    + ++p + k ++D+d  v+y+a Esl    
     CCD26420.1 587 TTIDPsLQKLCEDDDVDVKYFANESLEKCK 616
                    445440446899*************96655 PP

>> HEAT_EZ  HEAT-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.014        25      27      44 ..      59      76 ..      49      81 .. 0.87
   2 ?    1.9   0.0      0.19   3.3e+02      24      52 ..      95     123 ..      86     126 .. 0.81
   3 ?   -2.3   0.0         4   7.2e+03      42      47 ..     191     196 ..     187     212 .. 0.56
   4 ?   -1.6   0.0       2.3   4.2e+03      24      49 ..     260     285 ..     236     286 .. 0.60
   5 ?    3.0   0.0     0.087   1.6e+02      19      47 ..     299     323 ..     296     326 .. 0.76
   6 ?   -3.6   0.0        10   1.8e+04      26      45 ..     342     361 ..     341     363 .. 0.79
   7 !    9.9   0.1   0.00058         1      24      46 ..     379     401 ..     370     404 .. 0.88
   8 ?   -0.8   0.0       1.3   2.4e+03       3      13 ..     477     487 ..     476     508 .. 0.70
   9 ?    1.8   0.0       0.2   3.6e+02      26      45 ..     539     558 ..     520     562 .. 0.87
  10 ?   -1.4   0.0         2   3.6e+03      31      52 ..     591     612 ..     591     614 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.014
     HEAT_EZ 27 peilpaLlalLnddsdeV 44
                +e++p+L+   +dd+deV
  CCD26420.1 59 DELIPFLVEVAQDDEDEV 76
                69***************9 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.19
     HEAT_EZ  24 plvpeilpaLlalLnddsdeVRaaAagaL 52 
                  + p +lp+L  l ++++ +VR++A+  L
  CCD26420.1  95 EFAPILLPPLEILASTEETLVREKAVDSL 123
                 5678899999977788888******9877 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 4
     HEAT_EZ  42 deVRaa 47 
                 ++VR a
  CCD26420.1 191 PMVRRA 196
                 555544 PP

  == domain 4  score: -1.6 bits;  conditional E-value: 2.3
     HEAT_EZ  24 plvpeilpaLlalLnddsd.eVRaaAa 49 
                 ++ +e+l   ++l n d++ +VR+ Aa
  CCD26420.1 260 THSQELLNSAIKLIN-DEAwRVRYMAA 285
                 444444444444444.67778888886 PP

  == domain 5  score: 3.0 bits;  conditional E-value: 0.087
     HEAT_EZ  19 pellqplvpeilpaLlalLnddsdeVRaa 47 
                 p++l+    e++ ++l+l  d + +VR+a
  CCD26420.1 299 PNHLN----ELIEPFLNLCDDNEGDVRKA 323
                 55555....9******77776666**987 PP

  == domain 6  score: -3.6 bits;  conditional E-value: 10
     HEAT_EZ  26 vpeilpaLlalLnddsdeVR 45 
                 +++ilp   +l +d+  +VR
  CCD26420.1 342 LTKILPIIQNLSMDEMEDVR 361
                 57899999999999866776 PP

  == domain 7  score: 9.9 bits;  conditional E-value: 0.00058
     HEAT_EZ  24 plvpeilpaLlalLnddsdeVRa 46 
                 ++++ +lp Ll++L+d+++eVR 
  CCD26420.1 379 QAIEHLLPILLNMLRDECPEVRL 401
                 578889***************96 PP

  == domain 8  score: -0.8 bits;  conditional E-value: 1.3
     HEAT_EZ   3 vRraAawaLGr 13 
                 vR aA+++L+ 
  CCD26420.1 477 VRDAAVNNLSK 487
                 78888888864 PP

  == domain 9  score: 1.8 bits;  conditional E-value: 0.2
     HEAT_EZ  26 vpeilpaLlalLnddsdeVR 45 
                  +eilp+ ++l +d+ +++R
  CCD26420.1 539 ASEILPFIVNLSTDSVPNIR 558
                 579***********988876 PP

  == domain 10  score: -1.4 bits;  conditional E-value: 2
     HEAT_EZ  31 paLlalLnddsdeVRaaAagaL 52 
                 p L +l +dd+ +V++ A   L
  CCD26420.1 591 PSLQKLCEDDDVDVKYFANESL 612
                 6688899999999998876666 PP

>> Cnd1  non-SMC mitotic condensation complex subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1     0.055        99      69     125 ..     110     167 ..     100     184 .. 0.76
   2 !    8.9   0.1    0.0008       1.4      39      91 ..     243     298 ..     220     304 .. 0.77
   3 !   18.1   1.9   1.2e-06    0.0021      16     119 ..     299     404 ..     296     511 .. 0.83
   4 ?   -4.1   0.0       8.1   1.4e+04      25      38 ..     592     605 ..     585     613 .. 0.66

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.055
        Cnd1  69 DenprVvanalaalteisek.senaiynllpdiisklsdalnecsewgqitilefLls 125
                  e++ V++ a+ +l+ i++  s+++++++++ +i +l +a    s+ + +  +++++ 
  CCD26420.1 110 TEETLVREKAVDSLNIIAKDlSDQLLLENFIPLIERLANADWFSSKVSACGLFKSVIY 167
                 577899**************999**************987554555555555555555 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0008
        Cnd1  39 ktaaivvakL..ilndmvkekgflselaklleDenprVvanalaalteisek.sen 91 
                   ++i +ak    +nd   ++++l+   kl++De  rV+ +a   ++e+ ++ s+n
  CCD26420.1 243 VDCLISIAKFfnAKNDQTHSQELLNSAIKLINDEAWRVRYMAADRFEELTKQfSNN 298
                 4567778888888899*********************************9996544 PP

  == domain 3  score: 18.1 bits;  conditional E-value: 1.2e-06
        Cnd1  16 pnlveylvepLrkrLkDedpyVRktaai...vvakLilndmvkekgflselaklleDenprVvanalaalteisek..senaiynllpdiisklsdaln 109
                 pn + +l+ep  + + D++  VRk       ++akLi+n+++   ++l  +++l  De + V+++  +  ++i+e   +++ai  llp +++ l d   
  CCD26420.1 299 PNHLNELIEPFLNLCDDNEGDVRKAISKqipGFAKLINNQTIVLTKILPIIQNLSMDEMEDVRSSLALKVNDIAEVltKDQAIEHLLPILLNMLRD--- 394
                 6788999*****************986522278******************************************995556666666666666653... PP

        Cnd1 110 ecsewgqiti 119
                 ec e   + i
  CCD26420.1 395 ECPEVRLNII 404
                 6666544444 PP

  == domain 4  score: -4.1 bits;  conditional E-value: 8.1
        Cnd1  25 pLrkrLkDedpyVR 38 
                  L+k ++D+d  V+
  CCD26420.1 592 SLQKLCEDDDVDVK 605
                 56666667766665 PP

>> M11L  Apoptosis regulator M11L like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.2   0.00099       1.8      44     120 ..     199     278 ..     183     314 .. 0.78
   2 !   11.6   0.2   0.00014      0.26      27      97 ..     388     455 ..     371     519 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00099
                 HHHHHHHHHHSSST--HHH....HHHHHHHHHHH---HHHHHHHHHHHHHHHHH-SSS-THHHHHHHTTHHHHHHHTTHH CS
        M11L  44 kdlnslydileveditvyd...niknevieiLlddkrpsvkLAtislisiiikkltllshtiidealiddiidkIseeen 120
                 k+l +l+d+l  +  ++ +   +  +++ + + +d++ svk   +  + +i+k ++ ++     + l++  i  I +e  
  CCD26420.1 199 KNLPTLVDLLVENADLSTNqdwEFISNIFQNIINDNQDSVKFLGVDCLISIAKFFNAKNDQTHSQELLNSAIKLINDEAW 278
                 6667777766544444443347556667777777************9999********9998999999988887877655 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 0.00014
                 HHHHHHHHHHHHHHHTHHHHHHHHHHHSSST--HHH.HHHHHHHHHHH---HHHHHHHHHHHHHHHHH-SS CS
        M11L  27 lldkikksCekinndYakdlnslydileveditvydniknevieiLlddkrpsvkLAtislisiiikkltl 97 
                 ll+ ++  C  ++ +   +l+++ d++ +e  +++  +  + i+ L +d +  v+LA+i +i i++k+l+ 
  CCD26420.1 388 LLNMLRDECPEVRLNIISNLKIINDVIGIE-LLSES-LLPA-ITELAKDGNWRVRLAIIEYIPILAKQLGV 455
                 89999***********************65.55555.4544.566888*****************998864 PP

>> API5  Apoptosis inhibitory protein 5 (API5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1      0.55   9.8e+02      65      87 ..      27      49 ..      23      58 .. 0.87
   2 ?   -2.1   0.0       0.7   1.3e+03      70      93 ..     110     133 ..     107     135 .. 0.87
   3 ?    0.6   0.1      0.11   1.9e+02      46      80 ..     249     285 ..     224     294 .. 0.72
   4 !   18.7   0.8   3.4e-07   0.00061      46     120 ..     291     364 ..     243     377 .. 0.71
   5 ?   -1.0   0.0      0.34     6e+02     266     317 ..     500     556 ..     495     577 .. 0.76
   6 ?   -1.1   0.0      0.34     6e+02      58      79 ..     586     608 ..     578     616 .. 0.75

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.55
        API5 65 lDLiedddlgirkqAikdLpslc 87
                +D +  dd++ r+ A+k+L +++
  CCD26420.1 27 MDELKHDDVSTRVDAMKKLDKIA 49
                6777899***********98875 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.7
        API5  70 dddlgirkqAikdLpslckdtkey 93 
                  +++ +r +A+ +L  ++kd  ++
  CCD26420.1 110 TEETLVREKAVDSLNIIAKDLSDQ 133
                 68999***************9887 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.11
        API5  46 ipkFf..kfFPslaekaidaqlDLiedddlgirkqAi 80 
                 i+kFf  k   +++++ +++ + Li+d+   +r  A 
  CCD26420.1 249 IAKFFnaKNDQTHSQELLNSAIKLINDEAWRVRYMAA 285
                 678874345567889999**********999998885 PP

  == domain 4  score: 18.7 bits;  conditional E-value: 3.4e-07
        API5  46 ipkFfkfFPslaekaidaqlDLiedddlgirkqAikdLpslckdtkeyvskiadiLaQlLitedaveldavhkal 120
                 ++k f   P++ ++ i+  l+L++d++  +rk+  k++p ++k  ++++  ++ iL  +++  ++ e++ v+++l
  CCD26420.1 291 LTKQFSNNPNHLNELIEPFLNLCDDNEGDVRKAISKQIPGFAKLINNQTIVLTKILP-IIQNLSMDEMEDVRSSL 364
                 3455556699*********************************99999888888874.33444444555566665 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.34
        API5 266 kilpvfdklpea.....ekkldlLkllAeisaftgaqdkarellesvvelLleympl 317
                 +i+p + k+  +       +  lL  l  ++++++++  a+e+l+ +v+l  + +p 
  CCD26420.1 500 EIIPKLLKMDPQllknfIYRFTLLSTLTALCKVVSPKVIASEILPFIVNLSTDSVPN 556
                 555555333333333356678999999999******9999******99998887775 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 0.34
        API5  58 ekaidaql.DLiedddlgirkqA 79 
                 +++id  l  L+eddd+ ++  A
  CCD26420.1 586 TTTIDPSLqKLCEDDDVDVKYFA 608
                 5677766625********98766 PP

>> TAF6_C  TAF6 C-terminal HEAT repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.8   5.1e+03      16      38 ..     109     131 ..      78     136 .. 0.74
   2 ?    9.0   0.0   0.00099       1.8      15      46 ..     273     304 ..     221     343 .. 0.86
   3 ?    2.0   0.0      0.15   2.6e+02      18      40 ..     472     495 ..     447     546 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 2.8
      TAF6_C  16 ledhwaLRdfAAslLakilkkys 38 
                 + ++  +R+ A + L+ i+k  s
  CCD26420.1 109 STEETLVREKAVDSLNIIAKDLS 131
                 45668899999999999998766 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00099
      TAF6_C  15 eledhwaLRdfAAslLakilkkysssyktLkp 46 
                 + ++ w++R +AA+  +++ k++s++ ++L++
  CCD26420.1 273 INDEAWRVRYMAADRFEELTKQFSNNPNHLNE 304
                 45667*********************999985 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.15
      TAF6_C  18 dh.waLRdfAAslLakilkkysss 40 
                 d+ +++Rd A + L+k+ + ++s 
  CCD26420.1 472 DTvYSVRDAAVNNLSKLTEIFGSD 495
                 34499************9999875 PP

>> GatB_Yqey  GatB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0056        10      76     110 ..     205     239 ..     185     241 .. 0.90
   2 ?    4.8   0.2     0.013        23       1      69 [.     286     352 ..     286     385 .. 0.85

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0056
                 HHHHHHHCTXXXXXXSSXHHHHHHHHHHTXHHHHH CS
   GatB_Yqey  76 peeiieekgLkqisdeeeleklveeviaenpkave 110
                 ++ ++e  +L   +d e + ++ +++i+ n+++v+
  CCD26420.1 205 VDLLVENADLSTNQDWEFISNIFQNIINDNQDSVK 239
                 5789****************************986 PP

  == domain 2  score: 4.8 bits;  conditional E-value: 0.013
                 HHHHHHHHHSS.HHHHHHHHHTCHHHHHHHHTXXTTCSSTTHHHHHHHHHHHHTTSSGHHHHHHHHHHH CS
   GatB_Yqey   1 dffeevvkegadaklaanwllnellgelnkegleieelkltpeqlaellkliaegkIskkiakevleel 69 
                 d fee++k+ ++++   n l++ +l  +  ++ ++ +     +q+  + kli++++I  + +  +++ l
  CCD26420.1 286 DRFEELTKQFSNNPNHLNELIEPFLNLCDDNEGDVRK--AISKQIPGFAKLINNQTIVLTKILPIIQNL 352
                 56***********************************..677899999999999999776666666555 PP

>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.3   4.1e+03      16      32 ..      25      41 ..      23      41 .. 0.82
   2 ?    1.8   0.0      0.15   2.8e+02       5      27 ..     194     215 ..     190     219 .. 0.76
   3 ?   -2.9   0.0       4.7   8.4e+03      14      29 ..     306     321 ..     304     324 .. 0.73
   4 ?    6.1   0.1    0.0067        12       6      32 ..     378     403 ..     376     405 .. 0.84
   5 ?   -0.7   0.0      0.95   1.7e+03       5      26 ..     439     458 ..     437     462 .. 0.80
   6 ?   -1.6   0.0       1.7   3.1e+03       8      33 ..     537     562 ..     535     562 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 2.3
                HHHHHTTTSSHHHHHHH CS
         Arm 16 pLvrLLssedeevqeeA 32
                 L++ L+++d++++ +A
  CCD26420.1 25 LLMDELKHDDVSTRVDA 41
                6899999****998765 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.15
                 HHHHHHTTHHHHHHHHTT.TSSHH CS
         Arm   5 kdavieaGavppLvrLLs.sedee 27 
                 ++av +   +p Lv+LL  + d +
  CCD26420.1 194 RRAVGKN--LPTLVDLLVeNADLS 215
                 7788888..9*******8766655 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 4.7
                 HHHHHHHTTTSSHHHH CS
         Arm  14 vppLvrLLssedeevq 29 
                 ++p+++L ++   +v+
  CCD26420.1 306 IEPFLNLCDDNEGDVR 321
                 8899999986665555 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.0067
                 HHHHHTTHHHHHHHHTTTSSHHHHHHH CS
         Arm   6 davieaGavppLvrLLssedeevqeeA 32 
                 d+ ie+  +p+L+++L++e +ev+ ++
  CCD26420.1 378 DQAIEH-LLPILLNMLRDECPEVRLNI 403
                 566766.8***************9875 PP

  == domain 5  score: -0.7 bits;  conditional E-value: 0.95
                 HHHHHHTTHHHHHHHHTTTSSH CS
         Arm   5 kdavieaGavppLvrLLssede 26 
                 + a+ie+  +p+L + L  e  
  CCD26420.1 439 RLAIIEY--IPILAKQLGVEFF 458
                 789****..****999976655 PP

  == domain 6  score: -1.6 bits;  conditional E-value: 1.7
                 HHHTTHHHHHHHHTTTSSHHHHHHHH CS
         Arm   8 vieaGavppLvrLLssedeevqeeAa 33 
                 vi + ++p  v+L ++  +++++++a
  CCD26420.1 537 VIASEILPFIVNLSTDSVPNIRFNVA 562
                 78888999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       698  (0.0389313); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.66u 0.30s 00:00:00.96 Elapsed: 00:00:00.46
# Mc/sec: 4083.05
//
Query:       CCD26421.1  [L=1411]
Description: hypothetical protein NDAI_0H02470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.7e-63  213.4   0.1    8.1e-63  212.2   0.1    1.6  1  Pkinase         Protein kinase domain
    2.5e-23   82.7   0.0    4.1e-23   82.0   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    3.7e-09   36.3   0.0    7.1e-09   35.4   0.0    1.4  1  Kinase-like     Kinase-like
     0.0051   16.8   0.0       0.01   15.7   0.0    1.5  1  APH             Phosphotransferase enzyme family
     0.0088   14.9   3.2      0.013   14.2   0.0    2.7  2  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.024   14.9   0.0       0.49   10.7   0.0    2.9  2  PAS_9           PAS domain
      0.037   13.4   0.1      0.075   12.4   0.1    1.4  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
      0.038   13.6   0.1      0.093   12.3   0.1    1.6  1  RIO1            RIO1 family
      0.088   12.4   1.3       0.31   10.6   0.1    2.3  2  FTA2            Kinetochore Sim4 complex subunit FTA2


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.2   0.1   4.1e-66   8.1e-63       2     264 .]    1152    1409 ..    1151    1409 .. 0.94

  Alignments for each domain:
  == domain 1  score: 212.2 bits;  conditional E-value: 4.1e-66
                  EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH......HHHHHHHHHHHHHS...CTTB--EEEEEEESSEEEEEEE--TTEB...HH CS
     Pkinase    2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke......kkvlrEikilkklk...hpnivrlyevfeekdelylvleyvegge...la 86  
                  + l+k+GeG++GkV  +++k+++ iv++K+i ke++  ++        ++ +Ei+i+++l+   h+ni+rl+++fe+++++y+ + +  ++    l+
  CCD26421.1 1152 VILQKMGEGAYGKVNLCIHKKEKYIVCIKMIFKERILVDTWvrdrklGTIPSEIQIMATLNkkpHENILRLLDFFEDDNYYYIETPIHGETGcidLF 1248
                  6789*******************************98877777788899****************************999998777665443677** PP

                  HHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCB.SHHHHHHH CS
     Pkinase   87 dllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelessskltsfvgtseYlAPEvlkeney.skkvDvWs 182 
                  dl+e k++++e eak i+kq+++g+++lH++gi+HrD+K+eN+++d+kg +Ki+DFG a+ ++s+  ++ fvgt +Y APEvl++++y +k+ D+W+
  CCD26421.1 1249 DLIEFKTNMTEFEAKLIFKQVVSGIKHLHHQGIVHRDIKDENVIVDSKGLVKIIDFGSAAYVKSGP-FDVFVGTIDYAAPEVLSGEPYeGKPQDIWA 1344
                  ****************************************************************99.*********************9******** PP

                  HHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase  183 lGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264 
                  lG++ly+++++++pf+          ++d+      il e ++k++ ++e+ e++ +l+kk+l ++ ++R+ ++e+ ++++l
  CCD26421.1 1345 LGILLYTIVFKENPFY----------NIDE------IL-EGDLKFDSNTEVTEDCMELIKKVLIRQVRNRPAIDEIFDDKWL 1409
                  ****************..........6777......45.3489999**********************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   2.1e-26   4.1e-23       3     256 ..    1153    1404 ..    1151    1406 .. 0.82

  Alignments for each domain:
  == domain 1  score: 82.0 bits;  conditional E-value: 2.1e-26
                   EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEE.ST......TSSHHHHHHHHHHHHHHHTS...-BTTB--EEEEEESSSSEEEEEE--.TTEB CS
  Pkinase_Tyr    3 lgkklGeGafGkVvegtlkgekekkevkVavKtl.ke......eateeekeelleeakimkkl...khpnivkllgvctkeepllivteyv.kgGd 87  
                   + +k+GeGa+GkV  +  k    k+++ V +K++ ke        ++++   + +e++im +l    h+ni++ll +  +++ ++i t    + G+
   CCD26421.1 1153 ILQKMGEGAYGKVNLCIHK----KEKYIVCIKMIfKErilvdtWVRDRKLGTIPSEIQIMATLnkkPHENILRLLDFFEDDNYYYIETPIHgETGC 1244
                   6789*************99....77888888887544222222456677888999*****99965459***********99999998876525676 PP

                   HHHH..HHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE CS
  Pkinase_Tyr   88 Llkf..LrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk 181 
                   ++ f  ++   k+++t  +   +  qv +G+++L+++ +vHrd+   Nv+++++ +vki DfG a  +    +    +     + + apE+l+ + 
   CCD26421.1 1245 IDLFdlIEF--KTNMTEFEAKLIFKQVVSGIKHLHHQGIVHRDIKDENVIVDSKGLVKIIDFGSAAYV----KSGPFDVFVGTIDYAAPEVLSGEP 1334
                   555530555..57777777777899****************************************999....334445566799************ PP

                   EEHH.HHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr  182 ftsk.sDvWsfGvllwEiftlgespypglkneevleklkegkrlekpekcpeelyelmkkcweedpeeRptfselv 256 
                   ++ k  D+W+ G+ll+ i+   e+p+ +++     e l+ + + + +++++e+ +el+kk + ++ ++Rp + e+ 
   CCD26421.1 1335 YEGKpQDIWALGILLYTIVF-KENPFYNID-----EILEGDLKFDSNTEVTEDCMELIKKVLIRQVRNRPAIDEIF 1404
                   *97747************98.788887664.....567999999999999999999999999999****9999885 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   3.6e-12   7.1e-09     145     288 .]    1262    1397 ..    1247    1397 .. 0.84

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 3.6e-12
  Kinase-like  145 arlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvl.seve.kgfaPpEllgsrggytrknktkmthkldaWqlGl 238 
                   a+l+   q++  + +L+++g+vh +++ +n++ d kg +++ +f++   ++ +++    v    +a pE+l+    y+         + d W+lG+
   CCD26421.1 1262 AKLIF-KQVVSGIKHLHHQGIVHRDIKDENVIVDSKGLVKIIDFGSAAYVK-SGPFdVFVGtIDYAAPEVLSG-EPYEG-------KPQDIWALGI 1347
                   55555.7999999*******************************9854443.3443122323679*****998.33555.......578******* PP

  Kinase-like  239 viyriwclklPltlateeakeewkfklckkipekvkaLlkkfLqlsqedR 288 
                     y i   + P+ ++ e  + + kf    ++ e    L+kk+L +++++R
   CCD26421.1 1348 LLYTIVFKENPFYNIDEILEGDLKFDSNTEVTEDCMELIKKVLIRQVRNR 1397
                   **********************************************9998 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.3e-06      0.01     160     197 ..    1276    1308 ..    1245    1310 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 5.3e-06
                  --SSS-EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH  160 lpgelptvllHgDlhpgNllvdpddgrvtGviDfedag 197 
                  l    +++++H+D++  N++vd  +g v  +iDf+ a 
  CCD26421.1 1276 L---HHQGIVHRDIKDENVIVD-SKGLV-KIIDFGSAA 1308
                  3...4799**************.44444.7****9886 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   2.5       1.2   2.4e+03     215     268 ..     181     246 ..     165     279 .. 0.51
   2 !   14.2   0.0   6.8e-06     0.013     312     387 ..    1266    1331 ..    1250    1342 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.2
  Pkinase_fungal 215 dddi.aeiRkgldvtkaekfrskrkvvsssssqe..................lsskaevklkksesskkvekr 268
                     ++++  + R++l ++k+ k ++  + ++s s+++                  +      +++ks++s++ +++
      CCD26421.1 181 MNSTqISRRNSLAMRKK-KNNNIMSRTQSLSNNNlynkpfedgqntltrsisV------STEKSRNSTTNNSN 246
                     34444677888888877.32333222222223225556666666553222221......22222222222211 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 6.8e-06
  Pkinase_fungal  312 lrDaIkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlk 387 
                      +++++ g + L+ ++gi+HrDi  +N+++      ++    +iD+  a  ++           +GT+ + a evl+
      CCD26421.1 1266 FKQVVSGIKHLH-HQGIVHRDIKDENVIVD-----SKGLVKIIDFGSAAYVKS--GPF--DVFVGTIDYAAPEVLS 1331
                      7899********.**************987.....344455666666666662..222..3456666666666665 PP

>> PAS_9  PAS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0       0.4   7.9e+02       3      57 ..     538     593 ..     536     618 .. 0.76
   2 ?   10.7   0.0   0.00024      0.49       3      41 ..     822     863 ..     820     899 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.4
       PAS_9   3 gilidnpdg.ril.yaNeaalrllGyspeevlgksitdlfvtdpeanerlraaleqg 57 
                 +i+ ++ ++      aN+ a+ l+G s++++    + dl+ +++++   l+++l + 
  CCD26421.1 538 AIFTCTLNHpWPFkAANDLACLLFGISKNALRALTLLDLI-HSDSRPFVLHKILSTE 593
                 5666555555444489***************999999999.7777777777776655 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00024
       PAS_9   3 gili.dnpdgrilyaNeaalrl.lGyspeevlgksitdlf.v 41 
                 g +i d     ++++N++  +  +G ++++++g++itd++ +
  CCD26421.1 822 GLFIvDSQTLQLISFNKSISKNmFGIHFADLVGRPITDIIpS 863
                 6666355556999*****97644*****************31 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   3.7e-05     0.075     102     167 ..    1244    1305 ..    1242    1310 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 3.7e-05
         Kdo  102 aqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDld 167 
                   +dL dl++   ++ e   + ++k+v   i+ lh  g+ H+d+   n+ ++ ++     + +iD+ 
  CCD26421.1 1244 CIDLFDLIEFKTNMTEFEAKLIFKQVVSGIKHLHHQGIVHRDIKDENVIVDSKG----LVKIIDFG 1305
                  66777777754447777888899******************************9....89999985 PP

>> RIO1  RIO1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   4.7e-05     0.093     103     152 ..    1258    1307 ..    1245    1313 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 4.7e-05
                  -HHHHHHHHHHHHHHHHHHHHTSTEEESS-STTSEEEETT.EEEE--GTTE CS
        RIO1  103 eeeeaeelyeevleemrklykeaglvHaDLSeyNvlvded.kvviIDvsQa 152 
                  +e ea+ ++++v++ ++  ++++g+vH D+ + Nv+vd++  v iID++ a
  CCD26421.1 1258 TEFEAKLIFKQVVSGIKH-LHHQGIVHRDIKDENVIVDSKgLVKIIDFGSA 1307
                  367889999999997555.55*****************996778***9865 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2      0.35   7.1e+02     119     205 ..     425     522 ..     418     531 .. 0.64
   2 ?   10.6   0.1   0.00016      0.31     177     214 ..    1265    1307 ..    1251    1308 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.35
        FTA2 119 kklsrkfdaqelevqnsfaket.e..drsralgeedgkkrpiraIVKel........ellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyid 205
                 kk+     + e +  n+++++  +  ++ +   ++++ +r  +a+ K l        +  +  ee+ +++ ++  ++++++ ++ +++ D+++++ ++
  CCD26421.1 425 KKMDTPGYKSEYTSTNDLNEQEeTktQSLEQHHHHSNAERRTLALKKTLldslaepfFERNAVEEKLIEDEEETQQEIDQFINANVSMSDIRPQQDYG 522
                 55555545555555555555553123333334444555555566655558888888766678889999999999999999999999999999998665 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00016
        FTA2  177 qlpkllrdlkklhklgIvvrDlkeenyidg.....kLvDlsaa 214 
                  +++++++ +k lh +gIv+rD+k+en+i +     k++D+++a
  CCD26421.1 1265 IFKQVVSGIKHLHHQGIVHRDIKDENVIVDskglvKIIDFGSA 1307
                  578999********************98432334457777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1411 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1152  (0.0642534); expected 358.6 (0.02)
Passed bias filter:                      335  (0.0186848); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.91u 0.26s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 9168.66
//
Query:       CCD26422.1  [L=312]
Description: hypothetical protein NDAI_0H02480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-06   27.0  12.8    6.6e-06   26.5  12.8    1.2  1  EI24           Etoposide-induced protein 2.4 (EI24)
  ------ inclusion threshold ------
      0.085   11.9   0.1       0.14   11.2   0.1    1.3  1  YdfA_immunity  SigmaW regulon antibacterial
       0.22   11.4   0.1       0.35   10.8   0.1    1.2  1  PRR20          Proline-rich protein family 20
       0.74   10.4   8.6        0.1   13.1   1.2    3.0  2  DUF3899        Domain of unknown function (DUF3899)


Domain annotation for each model (and alignments):
>> EI24  Etoposide-induced protein 2.4 (EI24)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5  12.8   1.5e-09   6.6e-06       3     174 ..      75     280 ..      73     283 .. 0.58

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 1.5e-09
                 HHHHHHHTS.TTTHHHHHHHHHHHHHHHHHHHHHHH-........TTHHHHHHHHHHHHH..........HHHHHHHHHHHHHHH..HHHHHHHHHH.H CS
        EI24   3 lrglglllsspkllallllplllnlllfllllvlllw........vllasllvllllllp..........lwlfplvalllaapf..ygllaekvekrh 81 
                 ++++  l+++++   l++l +l   l+++ l++ ++w        v       l +++ p          ++   +++ll++ +   ++ l++   k h
  CCD26422.1  75 FQAFTELSKNRSDYSLTVLTVLTIYLIMFSLVLGFYWisitpiysV-------LFMVFGPvgmvitglhsVLHANMFTLLFMRMShiNNNLVNTCLKIH 166
                 5667777776666667766666666666666666667544444432.......2222222322222233222222444444444455444444443323 PP

                 ....H.................CCTTSHHHHHHHHHHHHHHHHHHHHH...HHTTHHH....HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTHHH CS
        EI24  82 ....l.................glvkslaeslkslllllllllvllpl...liPvvglilsplllswltayfycfeyldlaagrsleerrallerrray 156
                     l                  ++ +    +k + ++l + +++++l   ++Pvvg+i++ ++   +  ++y+ ++l l    s  er +++ ++ + 
  CCD26422.1 167 tkddLknrkkpikyyvpinslyFWIYQ--LPVKGVKYILGISILMILLsisFLPVVGPIAFHFMITPFVTKIYFSKFLRLKS-YSNVERYEIFFQKFGM 262
                 223313334444444444433323333..444555555555555555555566****9999999999999989999977776.69999*********** PP

                 HHHHHHHHHHHTTSCCHH CS
        EI24 157 flgfGllvslllliPlln 174
                 + +fG+++ ll +iP+++
  CCD26422.1 263 YTSFGMAAVLLESIPIVS 280
                 ****************96 PP

>> YdfA_immunity  SigmaW regulon antibacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   3.1e-05      0.14       9      55 ..     116     162 ..     108     179 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3.1e-05
  YdfA_immunity   9 lvlllvllkfvpvglwisallsgvkvsllelvgmrlrkvkpkvivea 55 
                     +  ++++ f pvg+ i+ l s  + ++++l+ mr+ +++++ + + 
     CCD26422.1 116 PIYSVLFMVFGPVGMVITGLHSVLHANMFTLLFMRMSHINNNLVNTC 162
                    46667888999****************************98876544 PP

>> PRR20  Proline-rich protein family 20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   7.8e-05      0.35     170     211 ..     195     236 ..     193     240 .. 0.94

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 7.8e-05
       PRR20 170 PasgpeavarrqllalyPcigfralgGssvlqiiqtsfgtyv 211
                 P+ g + +++ ++l +  +i+f ++ G  +++++ t+f t +
  CCD26422.1 195 PVKGVKYILGISILMILLSISFLPVVGPIAFHFMITPFVTKI 236
                 8999999*******************************9987 PP

>> DUF3899  Domain of unknown function (DUF3899)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.8      0.27   1.2e+03      33      60 ..      58      85 ..       8     109 .. 0.58
   2 ?   13.1   1.2   2.3e-05       0.1       6      82 ..     124     216 ..     120     217 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.27
     DUF3899 33 frklkklflkkskkddsyyeykekkkes 60
                f+++ + ++  s ++  ++   e  k++
  CCD26422.1 58 FKNFLSELFTGSPEKYPFQAFTELSKNR 85
                4444444444455555555555555553 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 2.3e-05
     DUF3899   6 llglllliigillivlnsGfFdgfsygfrklkklflkk..skkddsyyeykek......kkes........skkstrplliiGlllivlsivl 82 
                 ++g +  +i +l+ vl + +F++++  +  ++++++++  + + +++++ ++k        +s          k ++++l+i +l i+lsi +
  CCD26422.1 124 VFGPVGMVITGLHSVLHANMFTLLFMRMSHINNNLVNTclKIHTKDDLKNRKKpikyyvPINSlyfwiyqlPVKGVKYILGISILMILLSISF 216
                 56788899******************************9866666666666665655553333677777777899999999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       972  (0.0542138); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 2246.63
//
Query:       CCD26423.1  [L=1134]
Description: hypothetical protein NDAI_0H02490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.6e-39  132.4  21.0    4.6e-39  132.4  21.0    8.4  8  Gal11_ABD1     Gal11 activator-binding domain (ABD1)
    5.5e-33  113.6   3.2    5.5e-33  113.6   3.2    7.2  7  Med15_fungi    Mediator complex subunit 15
    5.8e-18   64.7   1.7    5.8e-18   64.7   1.7    4.5  4  KIX_2          KIX domain


Domain annotation for each model (and alignments):
>> Gal11_ABD1  Gal11 activator-binding domain (ABD1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.9   7.0         3   1.8e+04       3       9 ..     145     151 ..     138     156 .. 0.48
   2 !  132.4  21.0   7.7e-43   4.6e-39       2      81 .]     156     235 ..     152     237 .. 0.96
   3 ?   -2.8   3.2       1.2   6.9e+03       1      11 [.     234     244 ..     233     249 .. 0.79
   4 ?  -18.3  23.3         3   1.8e+04      14      61 ..     288     336 ..     258     345 .. 0.54
   5 ?   -7.2   8.8         3   1.8e+04       3      15 ..     394     406 ..     363     435 .. 0.75
   6 ?  -21.7  28.3         3   1.8e+04      40      80 ..     631     671 ..     591     674 .. 0.66
   7 ?   -0.7   5.1      0.26   1.5e+03       1      17 [.     665     681 ..     663     689 .. 0.81
   8 ?   -1.0   0.0      0.31   1.9e+03       7      19 ..     701     713 ..     695     716 .. 0.79

  Alignments for each domain:
  == domain 1  score: -7.9 bits;  conditional E-value: 3
  Gal11_ABD1   3 qqltsqq 9  
                 qq  +qq
  CCD26423.1 145 QQQQQQQ 151
                 2222222 PP

  == domain 2  score: 132.4 bits;  conditional E-value: 7.7e-43
  Gal11_ABD1   2 rqqltsqqqqlinqmkvapiPreLLqriPnlPpgvntWqqitelaqqkrlsaqdmqiakevykiHqqlllksklqqqqaq 81 
                 +q+lt+qqqqlinqmkva+iPreLLq+iPn+P+gv+tWqqitelaqqk+ls++dm++ake+yk+Hqqll+ksklqqqq+q
  CCD26423.1 156 QQRLTPQQQQLINQMKVATIPRELLQKIPNVPAGVTTWQQITELAQQKILSQDDMTVAKEMYKLHQQLLFKSKLQQQQQQ 235
                 799***********************************************************************877765 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1.2
  Gal11_ABD1   1 qrqqltsqqqq 11 
                 q+qql++qqqq
  CCD26423.1 234 QQQQLSQQQQQ 244
                 58889999888 PP

  == domain 4  score: -18.3 bits;  conditional E-value: 3
  Gal11_ABD1  14 nqmkv.apiPreLLqriPnlPpgvntWqqitelaqqkrlsaqdmqiake 61 
                 nq ++  + P++  q+  ++P  +   ++i+    q+ l +++m+  k+
  CCD26423.1 288 NQQRArGQQPQQQQQQQREIPNVLGQINEIFTTEEQRALLQEAMEACKN 336
                 3333213456666666666666666667777777777777777777766 PP

  == domain 5  score: -7.2 bits;  conditional E-value: 3
  Gal11_ABD1   3 qqltsqqqqlinq 15 
                 qq  +qqqq   q
  CCD26423.1 394 QQHQQQQQQQQQQ 406
                 3334444443333 PP

  == domain 6  score: -21.7 bits;  conditional E-value: 3
  Gal11_ABD1  40 qqitelaqqkrlsaqdmqiakevykiHqqlllksklqqqqa 80 
                 qq  e  q+  +s+q+ ++  ++ +i qq+ ++++ qq+ +
  CCD26423.1 631 QQQQEQQQNPPISQQQQKVQGNLQQIQQQMQWQQQQQQAAQ 671
                 344455555679999999***********999999655544 PP

  == domain 7  score: -0.7 bits;  conditional E-value: 0.26
  Gal11_ABD1   1 qrqqltsqqqqlinqmk 17 
                 q+qq ++qqqq++n   
  CCD26423.1 665 QQQQAAQQQQQMSNSAS 681
                 5899999******9765 PP

  == domain 8  score: -1.0 bits;  conditional E-value: 0.31
  Gal11_ABD1   7 sqqqqlinqmkva 19 
                  +qq++ n m++a
  CCD26423.1 701 YHQQIIANTMRSA 713
                 4688899999987 PP

>> Med15_fungi  Mediator complex subunit 15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.0  17.2         3   1.8e+04       2      38 ..     134     170 ..     133     232 .. 0.87
   2 ?  -10.9  13.1         3   1.8e+04       4      46 ..     232     273 ..     226     278 .. 0.61
   3 ?  -14.1  16.5         3   1.8e+04      18      61 ..     275     319 ..     258     375 .. 0.47
   4 ?   -7.7  10.2         3   1.8e+04       5      43 ..     370     406 ..     366     420 .. 0.54
   5 ?   -8.0   8.3         3   1.8e+04       3      31 ..     400     429 ..     390     437 .. 0.43
   6 !  113.6   3.2   9.2e-37   5.5e-33       3     112 .]     497     607 ..     495     607 .. 0.98
   7 ?  -14.0  19.2         3   1.8e+04       6      46 ..     624     660 ..     612     683 .. 0.58

  Alignments for each domain:
  == domain 1  score: -8.0 bits;  conditional E-value: 3
  Med15_fungi   2 qlkeklkqiyeevaknavrlkpitnlspeqKaaikqq 38 
                  q+ ++lk+ +++ ++++ + +p++ l+p+q++ i+q+
   CCD26423.1 134 QAAMQLKNRQQQQQQQQQQQQPQQRLTPQQQQLINQM 170
                  8899******************************996 PP

  == domain 2  score: -10.9 bits;  conditional E-value: 3
  Med15_fungi   4 keklkqiyeevaknavrlkpitnlspeqKaaikqqlqeiqqml 46 
                  +++ +q++++ ++++ +  + + + p q+++ +qq q++qq+ 
   CCD26423.1 232 QQQQQQLSQQQQQRQGQQGQGQ-VLPPQQQQLQQQQQQLQQQQ 273
                  4555555555555555555555.66667777777777777764 PP

  == domain 3  score: -14.1 bits;  conditional E-value: 3
  Med15_fungi  18 avrlkpitn.lspeqKaaikqqlqeiqqmlarvdaliplfykltk 61 
                  ++r ++++    p+q++a  qq q+ qq+ +++ +++ ++  +  
   CCD26423.1 275 QPRGTSVSTnQNPNQQRARGQQPQQQQQQQREIPNVLGQINEIFT 319
                  444444444455555555555555555555555555444433332 PP

  == domain 4  score: -7.7 bits;  conditional E-value: 3
  Med15_fungi   5 eklkqiyeevaknavrlkpitnlspeqKaaikqqlqeiq 43 
                  + ++  ++ +++   ++kp++  +++q+++ +qq q+ q
   CCD26423.1 370 QSVRLAQAAAMAATNNNKPMP--QQQQQHQQQQQQQQQQ 406
                  556666666666666777777..3333333222222222 PP

  == domain 5  score: -8.0 bits;  conditional E-value: 3
  Med15_fungi   3 lkeklkqiyeevaknavrlkpitn.lspeq 31 
                   +++ +q + ++++n+ ++++ +  l+p+q
   CCD26423.1 400 QQQQQQQTRVQATQNQGPMQQAQIqLQPQQ 429
                  223333333333333333332222255555 PP

  == domain 6  score: 113.6 bits;  conditional E-value: 9.2e-37
  Med15_fungi   3 lkeklkqiyeevaknavrlkpitn.lspeqKaaikqqlqeiqqmlarvdaliplfykltkneeavkrLlqmrimlkeqleklpqdqftikpeyLeklk 99 
                  + e +++i++e++++++rl+++tn lsp +K++ik++lq +qq++ +v++++p++y++tkne+++k++lq+ri++ke+lek+++d+f++k+++++kl 
   CCD26423.1 497 DIEVVRRISSEAQRTPLRLSDLTNsLSPGEKDEIKRKLQMNQQLFTQVSNYAPQVYVFTKNENFLKEVLQLRIFVKEILEKCSKDIFVVKLDTVDKLV 594
                  6789********************************************************************************************** PP

  Med15_fungi 100 sqiqkyfeyvksq 112
                   ++qky+e++k q
   CCD26423.1 595 VKYQKYWESMKMQ 607
                  **********976 PP

  == domain 7  score: -14.0 bits;  conditional E-value: 3
  Med15_fungi   6 klkqiyeevaknavrlkpitnlspeqKaaikqqlqeiqqml 46 
                  +lk+ +++ ++++ +++pi+    +q+++++  lq+iqq++
   CCD26423.1 624 QLKSQQQQQQQEQQQNPPIS----QQQQKVQGNLQQIQQQM 660
                  44444444444444444444....44455555555555443 PP

>> KIX_2  KIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   1.7   9.8e-22   5.8e-18       5      80 ..       6      83 ..       2      85 .. 0.96
   2 ?   -3.3   1.5       1.6   9.7e+03      72      77 ..     145     150 ..     129     185 .. 0.66
   3 ?   -2.0   0.1      0.62   3.7e+03       6      27 ..     346     370 ..     343     383 .. 0.64
   4 ?   -5.6   4.5         3   1.8e+04      61      80 ..     653     672 ..     643     675 .. 0.64

  Alignments for each domain:
  == domain 1  score: 64.7 bits;  conditional E-value: 9.8e-22
       KIX_2  5 ratlspeeRqkivnkiletLkk.hlpvsg.peglnelkkiAvrFEekiFskAtskedYlrkislKmlqmetksqnaas 80
                ++tl+ +eR+++v+++l++L++ + +++g +e+++++k +A++FE+++++k++s+++Yl+++++K+++m+++++++++
  CCD26423.1  6 KDTLTAAERSSNVSELLQVLMDiNEINGGnSETASKMKVHAKNFENALYAKSSSRKEYLDSMREKVNAMRETRDSRKK 83
                579**************************9*******************************************99886 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 1.6
       KIX_2  72 etksqn 77 
                 ++++q+
  CCD26423.1 145 QQQQQQ 150
                 222222 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 0.62
       KIX_2   6 atlspeeRqkivnkil..etLkk.h 27 
                 +t++ ++Rq ++ k +  ++Lkk +
  CCD26423.1 346 TTVPEQARQLFIRKYInqKVLKKiQ 370
                 7899999999999955113455544 PP

  == domain 4  score: -5.6 bits;  conditional E-value: 3
       KIX_2  61 lrkislKmlqmetksqnaas 80 
                 l++i++ m+  ++++q+a++
  CCD26423.1 653 LQQIQQQMQWQQQQQQAAQQ 672
                 55666666655555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1134 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4669  (0.260416); expected 358.6 (0.02)
Passed bias filter:                      637  (0.035529); expected 358.6 (0.02)
Passed Vit filter:                       394  (0.0219756); expected 17.9 (0.001)
Passed Fwd filter:                       140  (0.00780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 3.42u 0.43s 00:00:03.85 Elapsed: 00:00:00.74
# Mc/sec: 4611.09
//
Query:       CCD26424.1  [L=1119]
Description: hypothetical protein NDAI_0H02500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-55  188.0   0.3    1.9e-55  188.0   0.3    2.0  3  SNF2_N          SNF2 family N-terminal domain
    3.9e-20   72.3   0.1    1.6e-16   60.6   0.1    3.3  2  Helicase_C      Helicase conserved C-terminal domain
    6.5e-12   45.8   0.1    3.3e-11   43.5   0.0    2.4  2  ResIII          Type III restriction enzyme, res subunit
    2.5e-05   23.6   0.2    7.1e-05   22.1   0.2    1.7  1  ERCC3_RAD25_C   ERCC3/RAD25/XPB C-terminal helicase
  ------ inclusion threshold ------
        0.2   11.9   3.0       0.56   10.5   3.0    1.7  1  ER-remodelling  Intracellular membrane remodeller
       0.94   10.1   6.3        4.7    7.9   0.1    3.9  3  Anillin_N       Anillin N-terminus


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2      0.82   2.4e+03     267     301 ..     155     190 ..     108     209 .. 0.47
   2 !  188.0   0.3   6.5e-59   1.9e-55      51     347 ..     576     868 ..     524     871 .. 0.83
   3 ?   -3.5   0.1       1.1   3.3e+03     255     299 ..     939     983 ..     931     990 .. 0.83

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.82
                 TEE---GGGT.--S---EEEEEEEEE--HHHHHHHH CS
                 xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 267 lmlrrakkdv.eknlPpkteeiiflklskverksYn 301
                 +++  +k+++ + n +  t+    + l k++ +++ 
  CCD26424.1 155 TLINTRKQQLnNNNTAAATQASSKITLAKQKTSIFD 190
                 444445555533344555555555555555555544 PP

  == domain 2  score: 188.0 bits;  conditional E-value: 6.5e-59
                 HHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH--------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  51 akqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapkllad 149
                 +++++  +iLaD+mGLGKT qv+++ +   + +++++         gp+L+vvP+s+l++W +e++++++s +++ +++++++  + + ++++++   +
  CCD26424.1 576 LYHNQMSCILADDMGLGKTCQVISFFA---YLKQINE--------PGPHLVVVPSSTLENWLREFQKFCPSLKIEPYYGSQNE--RAELREILERNSGK 661
                 68999**********************...7777766........38******************************999987..55556999****** PP

                 --EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--.HHHHHHHTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
      SNF2_N 150 ydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfge.kqtfdkllqr 247
                 ydv++ttY+  + ++      s l +++ + +v DEgh+lkns s+  + + k++++ r++ltGTP+qn+l++l++Ll+f++++ f + k++  + +++
  CCD26424.1 662 YDVIVTTYNLAAGNK---YDVSFLRNRQFNVIVYDEGHMLKNSFSERFNKLMKIRGNFRLLLTGTPLQNNLKELMSLLEFIMPQLFISkKDSLATVFKQ 757
                 *********999666...7899*********************9999999999**********************************955588888888 PP

                 HHH..........HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-.... CS
                 xxx..........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.... RF
      SNF2_N 248 pie..........aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskek.... 332
                  ++             ++ + r  +++ +++lrr+k++v k lP+++++i ++++++ +r++Y++  +  +++ ++ +  +     k+           
  CCD26424.1 758 RAKttddnqghnpLLVQEAIDRAKTMMTPFILRRRKDQVLKHLPKRHNKIEYCDMTNSQREIYEQEVNTVMEHKRMISEGILPDDPKERAI---Iqnss 853
                 7777777888777677788888889999************************************655554444443333322222222222...12333 PP

                 HHHHHHHHHHHHH-- CS
                 xxxxxxxxxxxxxxx RF
      SNF2_N 333 ilelllelrqacnhp 347
                   ++++ lr+a  hp
  CCD26424.1 854 SKNIIMALRKASIHP 868
                 666777777777666 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 1.1
                 HHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 255 kgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverks 299
                  +++ L ++l+++++ +  k +  +l  ++  i+ + ls  + k+
  CCD26424.1 939 GKVNALCKVLKEIIIEKKEKVLIFSLFTQVLDILEMVLSTLKYKF 983
                 568899999999999999999988999999999999888776665 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0012       3.6      10      79 ..     604     674 ..     595     693 .. 0.71
   2 !   60.6   0.1   5.3e-20   1.6e-16       3     111 .]     941    1053 ..     939    1053 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0012
                 HHHTTTTSEEEEEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSS CS
  Helicase_C  10 lkleeeggkilifvntidrlek.vklllekk..gikvavlhgelpqnereeileqfnkgesdvLiatdvaerG 79 
                 lk+ +e g  l++v++ + le+ ++ + +k+  ++k+ +++g+ + +  ++ + + n+g++dv+++t  ++ G
  CCD26424.1 604 LKQINEPGPHLVVVPSST-LENwLREF-QKFcpSLKIEPYYGSQNERAELREILERNSGKYDVIVTTYNLAAG 674
                 456667777777777776.33224445.344789********555554444444445*********9877766 PP

  == domain 2  score: 60.6 bits;  conditional E-value: 5.3e-20
                  HHHHHHHH..HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSSS CS
  Helicase_C    3 leallell..kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlpr 95  
                  ++al++ l     e+++k+lif+ +++ l+ ++++l++ ++k+++l+g+++ n+r+  +++f  ++++  ++++t++++ Gi++ ++n+V +fd  +
  CCD26424.1  941 VNALCKVLkeIIIEKKEKVLIFSLFTQVLDILEMVLSTLKYKFLRLDGSTQVNDRQSLIDKFYdDDTIPvFILSTKAGGFGINLVCANNVLIFDQSF 1037
                  666666665555799************999899999999***********************9567777999************************* PP

                  SHHHHHHHHTTSSSTT CS
  Helicase_C   96 nvtsyiqriGRtgRag 111 
                  n+++  q+++R++R+g
  CCD26424.1 1038 NPHDDRQAADRAHRVG 1053
                  **************87 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4       2.6   7.6e+03      85     115 ..     262     293 ..     239     318 .. 0.58
   2 !   43.5   0.0   1.1e-14   3.3e-11       2     169 ..     560     724 ..     559     726 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 2.6
                 GEEEESSS-B--........-SEEEEEHHHHH CS
      ResIII  85 igkkvsgdkkka.kekdstnkkilvttiqsld 115
                 + +++ +d++++ +e+++++ +++v++++  d
  CCD26424.1 262 NPTILPNDNDEEeEESEQEDEDLTVEEEEISD 293
                 44445555555545566666666666555444 PP

  == domain 2  score: 43.5 bits;  conditional E-value: 1.1e-14
                 -EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.... CS
      ResIII   2 lelreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka.... 96 
                 ++l++yQ++ i+ l + l  +++   +++   G GKT   +++ ++l++ ++    l++vp+ +l e +l+ef+kf ++ + e    + +++++a    
  CCD26424.1 560 MTLKDYQQTGINWL-NLLY-HNQMSCILADDMGLGKTCQVISFFAYLKQINEPGPHLVVVPSSTL-ENWLREFQKFCPSLKIE--PYYGSQNERAelre 653
                 78999***999755.5555.7888999**********************98888*******9987.88**********98633..33333333335666 PP

                 ........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS...TTTHHHHHT---SEEEEEESS- CS
      ResIII  97 .kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak..kswreilekfkeavllglTATp 169
                   e++s + +++vtt++ +  ++    ++   l++ +f+vi+ DE H l+ +  + +++ l k++ +++l lT+Tp
  CCD26424.1 654 iLERNSGKYDVIVTTYNLAAGNK----YDVSFLRNRQFNVIVYDEGHMLKNSfsERFNK-LMKIRGNFRLLLTGTP 724
                 7799*************999999....666666677889************54446666.666788*********9 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   2.4e-08   7.1e-05      45     155 ..     940    1059 ..     926    1073 .. 0.80

  Alignments for each domain:
  == domain 1  score: 22.1 bits;  conditional E-value: 2.4e-08
  ERCC3_RAD25_C   45 kfra.cefLikyhekrgDkiivfs..Dnvf.aLkeyakklkkpyi..yGetseaerlkilqkfkknpkvntifls.kvgDtsiDlPean.vli. 129 
                     k++a c+ L ++  ++++k+++fs   +v   L+ + ++lk++++   G+t+ ++r+++++kf  ++++ + +ls k g   i+l  an vli 
     CCD26424.1  940 KVNAlCKVLKEIIIEKKEKVLIFSlfTQVLdILEMVLSTLKYKFLrlDGSTQVNDRQSLIDKFYDDDTIPVFILStKAGGFGINLVCANnVLIf 1033
                     554438889999999*******99443444146777788999996337**********************999986899******999735553 PP

  ERCC3_RAD25_C  130 qisshfgsrrqeaqrlGriLrakkks 155 
                       s++    rq a r  r+ ++k+ +
     CCD26424.1 1034 DQSFNPHDDRQAADRAHRVGQTKEVT 1059
                     457777889*********99998864 PP

>> ER-remodelling  Intracellular membrane remodeller
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.0   0.00019      0.56      66     119 ..     135     192 ..     124     208 .. 0.74

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00019
                     XXXXXXXXXXXXXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
  ER-remodelling  66 klakpsatqaptpaprtrlqda....skqespvgaaaasasapkwrvaktvyssaerl 119
                     k ++ps++q+p p+ rtrl+       +q ++ ++aaa+++++k   ak   s  +r 
      CCD26424.1 135 KATTPSPSQSPQPTHRTRLPTLintrKQQLNNNNTAAATQASSKITLAKQKTSIFDRY 192
                     55689*************9976544333445566677778888999999877776665 PP

>> Anillin_N  Anillin N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0016       4.7       2      29 ..     118     145 ..     117     151 .. 0.77
   2 ?    3.4   0.2     0.041   1.2e+02       2      38 ..     150     187 ..     149     206 .. 0.81
   3 ?   -1.9   0.2       1.8   5.5e+03      23      56 ..     514     543 ..     504     546 .. 0.43

  Alignments for each domain:
  == domain 1  score: 7.9 bits;  conditional E-value: 0.0016
   Anillin_N   2 ksRmqkLaeqRkrwdkddasddvpessl 29 
                 ++R+ k+ +qR++w++ +a+  +p+ s+
  CCD26424.1 118 RERLTKILNQREKWSTKKATTPSPSQSP 145
                 79*************9777666665554 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.041
   Anillin_N   2 ksRmqkLaeqRkrwdk.ddasddvpesslvsplkseae 38 
                 ++R+  L + Rk+  + +++ ++ ++ss+++  k+++ 
  CCD26424.1 150 RTRLPTLINTRKQQLNnNNTAAATQASSKITLAKQKTS 187
                 699999***9998666599999999****999999886 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.8
   Anillin_N  23 dvpesslvsplkseaeaasppkpstssetpvgRr 56 
                 d++e  +v++ +++ +++      +  ++ v R+
  CCD26424.1 514 DEDEDAVVKSNRKKSQKQE----PAPLKVNVQRK 543
                 3333333333333333223....33345555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1119 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1393  (0.0776954); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        24  (0.00133861); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.45
# Mc/sec: 7391.71
//
Query:       CCD26425.1  [L=372]
Description: hypothetical protein NDAI_0H02510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-12   48.5   5.1        0.8   10.4   0.0    6.4  6  RCC1      Regulator of chromosome condensation (RCC1) repeat
    3.3e-10   39.5  20.6    1.3e-05   24.8   1.3    5.4  6  RCC1_2    Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00038       3.4      36      49 ..      12      25 ..       3      26 .. 0.81
   2 !    5.7   0.1    0.0026        24       1      15 [.      29      43 ..      29      48 .. 0.96
   3 !    7.3   0.0   0.00084       7.5      34      50 .]      68      84 ..      61      84 .. 0.83
   4 !    5.6   0.1    0.0027        25       3      21 ..      89     109 ..      87     120 .. 0.85
   5 !   10.4   0.0     9e-05       0.8       4      49 ..     153     203 ..     152     204 .. 0.82
   6 !    7.5   0.0   0.00071       6.3       6      16 ..     303     313 ..     298     339 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00038
                -EEEEEEETTEEEE CS
        RCC1 36 rvvkvacGddhtva 49
                r +k++cG++ht++
  CCD26425.1 12 RLKKIVCGGNHTIL 25
                7899********87 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0026
                TTEEEEEE--GGGTT CS
        RCC1  1 dGrVysWGrndyGqL 15
                dG  +++G n +GqL
  CCD26425.1 29 DGVCFGCGDNANGQL 43
                899***********9 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.00084
                TS-EEEEEEETTEEEEE CS
        RCC1 34 gnrvvkvacGddhtval 50
                +n++ +++cG+ +tv++
  CCD26425.1 68 DNPFADIVCGWEFTVMV 84
                3599**********975 PP

  == domain 4  score: 5.6 bits;  conditional E-value: 0.0027
                 EEEEEE--GGGTTSSSS-..- CS
        RCC1   3 rVysWGrndyGqLGlgtt..e 21 
                 +V+s G + +G LGlg++  +
  CCD26425.1  89 NVFSRGVGLKGELGLGDDllQ 109
                 79**************98654 PP

  == domain 5  score: 10.4 bits;  conditional E-value: 9e-05
                 EEEEE--GGGTTSSSS-.--EEEEEE-GGGTTS....-EEEEEEETTEEEE CS
        RCC1   4 VysWGrndyGqLGlgtt.esvlvPtkveglsgn....rvvkvacGddhtva 49 
                 Vy+WG+n + qL  +   +sv++P+ + + + +     +  v+ G d+ ++
  CCD26425.1 153 VYGWGSNIKCQLFKPRVsKSVTKPVIIHSIKTRdynkTIDYVCMGKDFMLF 203
                 9***********77777788899****999999999555558889888766 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.00071
                 EEE--GGGTTS CS
        RCC1   6 sWGrndyGqLG 16 
                 +WG++++G +G
  CCD26425.1 303 CWGWGEHGNCG 313
                 7*********9 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   1.3   1.5e-09   1.3e-05       2      30 .]      14      42 ..      13      42 .. 0.97
   2 !    3.2   0.1    0.0091        82       2      24 ..      72      94 ..      71      99 .. 0.88
   3 !    5.5   0.1    0.0018        16      19      26 ..     144     159 ..     127     162 .. 0.73
   4 ?   -1.1   0.0       0.2   1.8e+03       4      20 ..     194     210 ..     191     213 .. 0.85
   5 ?   -1.7   0.1      0.31   2.7e+03      19      30 .]     256     267 ..     255     267 .. 0.85
   6 !   15.7   2.1   1.1e-06    0.0097       1      29 [.     281     310 ..     281     313 .. 0.86

  Alignments for each domain:
  == domain 1  score: 24.8 bits;  conditional E-value: 1.5e-09
      RCC1_2  2 ksvsaGdyHscaLtedGeVlcWGsNsdGQ 30
                k++ +G++H++ +++dG  +++G+N +GQ
  CCD26425.1 14 KKIVCGGNHTILVRDDGVCFGCGDNANGQ 42
                689*************************9 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.0091
      RCC1_2  2 ksvsaGdyHscaLtedGeVlcWG 24
                +++ +G+ +++ ++  ++V++ G
  CCD26425.1 72 ADIVCGWEFTVMVDHQNNVFSRG 94
                689**********9999999866 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0018
      RCC1_2  19 e........VlcWGsN 26 
                 +        V++WGsN
  CCD26425.1 144 DvngeytsiVYGWGSN 159
                 445557777******9 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.2
      RCC1_2   4 vsaGdyHscaLtedGeV 20 
                 v++G ++ +++  +G++
  CCD26425.1 194 VCMGKDFMLFVNKEGRI 210
                 88999****99999987 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 0.31
      RCC1_2  19 eVlcWGsNsdGQ 30 
                 ++ ++G  ++GQ
  CCD26425.1 256 KITSYGYGGFGQ 267
                 56799******9 PP

  == domain 6  score: 15.7 bits;  conditional E-value: 1.1e-06
      RCC1_2   1 VksvsaGdyH.scaLtedGeVlcWGsNsdG 29 
                 Vk+  +G+ H  ++L++d++V cWG+ ++G
  CCD26425.1 281 VKDFNIGSEHgILVLDDDNKVACWGWGEHG 310
                 7888899***6666999*********9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       333  (0.0185733); expected 358.6 (0.02)
Passed bias filter:                      291  (0.0162307); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 2840.54
//
Query:       CCD26426.1  [L=898]
Description: hypothetical protein NDAI_0H02520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.5e-21   74.7   0.0    4.8e-20   72.1   0.0    2.3  2  Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
    2.6e-07   30.9  13.3    5.7e-05   23.4   3.9    5.9  8  LRR_4          Leucine Rich repeats (2 copies)


Domain annotation for each model (and alignments):
>> Exo_endo_phos  Endonuclease/Exonuclease/phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       0.8   7.2e+03     115     135 ..     187     235 ..     135     242 .. 0.61
   2 !   72.1   0.0   5.3e-24   4.8e-20       1     233 []     572     879 ..     572     879 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 0.8
                    E............................CCCHHGHHHHHHHHHHHHHH CS
                    x............................xxxxxxxxxxxxxxxxxxxx RF
  Exo_endo_phos 115 i............................ashrdhdlvrdlqllalllq 135
                                                 ++h+ h++ +++q+++ ++q
     CCD26426.1 187 LaavslqslgqpnvyarqnamkkylasqnPTHQQHQVQQQQQQQGKQQQ 235
                    1444444444444455556666666655566666666666666666555 PP

  == domain 2  score: 72.1 bits;  conditional E-value: 5.3e-24
                    EEEEESTG...........CHHHHTHHHHHHHHHHHHHHCTTSEEEEEEEBSCTCHHHHHHHHH.TTCEEEEECCH.....ECSSSTTSSEEEEEE CS
                    xxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx.....xxxxxxxxxxxxxxx RF
  Exo_endo_phos   1 ltwNvngq...........aspalgssrrsdrladlltaydaDvlgLQEvdddelsriplllal.ggflgasstsp.....tgggggggnggavls 79 
                    l++N++ q           +s+al++++r   l++ + +y+ D+l+LQEv     ++++ +l++ + + g ++ ++          ++ +g+++++
     CCD26426.1 572 LSYNTLCQhyatpkmyrytPSWALSWDYRREKLKEQILSYQSDILCLQEVESKTFEEFWGPLLEkYDYQGVFHIKTraktmQTKESKKVDGCCIFF 667
                    79************************************************************999444444444445566666777999999**** PP

                    CSTEEEEEEEEEEETSSSSGCEEEEEEEEEEEEEEE.................................CCCHHGHHHHHHHHHHHHHHHHH.HHH CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.................................xxxxxxxxxxxxxxxxxxxxxxx.xxx RF
  Exo_endo_phos  80 rfpltslfrrtfiefndlvaalrreplaakleqlni.................................ashrdhdlvrdlqllalllqvea.lna 141
                    + + + l      +f   ++ +     ++++++                                    +++   ++++ l +   ll+ e+ +++
     CCD26426.1 668 KKSKFKLLAKEAMDFSGTWMKHKKFQRTEDYLNRAMnkdnvalymklqsitsgetvwvvtthlhwdpkfNDVKTFQVGILLDHMETLLKEENpKQD 763
                    *99977766666666666666666666666666666677777777777799999999999999999999777777777777777666666652455 PP

                    HTTSEEEEEEE-SSSTSGGGBSCGHHHHHHCTTTH.....H..............SSCESCETTTTTTTTTTTEB-BEEEEEEC.HHHCCEEEEEE CS
                    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....x..............xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxx RF
  Exo_endo_phos 142 drgapvivaGDfNarpsdddsrvlrtrglalapap.....v..............glyllgggptptyvtraggsrlDrilasp.alalfrsgvlp 217
                     ++a v+++GD+N+  ++ ++ +++t++  ++++      +                y+  g+  +t+ t++++  +D+i++s+ +l++++++   
     CCD26426.1 764 VKKANVVICGDLNSYLDSAVYELFTTGRVVNHQDNkgrdfGymtqkhfahnlslkSSYNCIGELPFTNFTPSFTDVIDYIWFSTqSLRVRGLLGEV 859
                    56778999***************************7766615566677788899******************************777777766665 PP

                    ECCHHEEC.....TSSCSSSB CS
                    xxxxxxxx.....xxxxxxxx RF
  Exo_endo_phos 218 pplalvrr.....ealtlSDH 233
                    +p  +        ++  +SDH
     CCD26426.1 860 DPDYAA-KfvgfpNDKFPSDH 879
                    554433.36999999999999 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.4   8.2         2   1.8e+04      27      27 ..      97      97 ..      65     115 .. 0.59
   2 ?   -9.4   9.6         2   1.8e+04      13      33 ..     117     139 ..      97     145 .. 0.62
   3 ?   -3.8   0.1         2   1.8e+04      33      39 ..     177     183 ..     175     186 .. 0.74
   4 ?   -3.8   0.1         2   1.8e+04      10      15 ..     309     314 ..     307     319 .. 0.71
   5 ?    0.1   0.1      0.14   1.3e+03      22      33 ..     405     416 ..     397     420 .. 0.78
   6 !   23.4   3.9   6.4e-09   5.7e-05       3      39 ..     423     459 ..     423     465 .. 0.85
   7 !   21.9   2.0   1.9e-08   0.00017       2      36 ..     468     502 ..     468     509 .. 0.90
   8 ?   -3.1   0.0       1.4   1.3e+04       9      18 ..     820     829 ..     814     836 .. 0.63

  Alignments for each domain:
  == domain 1  score: -9.4 bits;  conditional E-value: 2
                E CS
       LRR_4 27 e 27
                +
  CCD26426.1 97 T 97
                3 PP

  == domain 2  score: -9.4 bits;  conditional E-value: 2
                 --E-S-HHH.-TT--EEE-.-.S CS
       LRR_4  13 ltdipllek.lpnLkeLdLsg.N 33 
                 +   +  ++  p L +++L++ N
  CCD26426.1 117 IGMNSMANNtSPALNSINLNSlN 139
                 44444455557778888885544 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 2
                 S-----G CS
       LRR_4  33 Nnlitdl 39 
                 Nn+i++l
  CCD26426.1 177 NNPIWKL 183
                 7799998 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 2
                 SS---E CS
       LRR_4  10 nNqltd 15 
                 +N++td
  CCD26426.1 309 SNNITD 314
                 689995 PP

  == domain 5  score: 0.1 bits;  conditional E-value: 0.14
                 -TT--EEE-.-S CS
       LRR_4  22 lpnLkeLdLsgN 33 
                 + nL+ +++++N
  CCD26426.1 405 FSNLQIFNINQN 416
                 678999999766 PP

  == domain 6  score: 23.4 bits;  conditional E-value: 6.4e-09
                 --EEE--SS---E-S-.HHH-TT--EEE-.-S-----G CS
       LRR_4   3 LevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdl 39 
                 L+ L+L++N lt++p  +++l+nL +LdLs+N ++t l
  CCD26426.1 423 LTRLYLNGNGLTTLPEeIKNLTNLCVLDLSNN-RLTEL 459
                 89**************6667*********555.77776 PP

  == domain 7  score: 21.9 bits;  conditional E-value: 1.9e-08
                 S--EEE--SS---E-S-.HHH-TT--EEE-.-S--- CS
       LRR_4   2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnli 36 
                 +L++L+++nN +t +p+ l++l nL+ L + gN ++
  CCD26426.1 468 RLKYLYFFNNLITNLPWeLGNLYNLQFLGCEGN-PL 502
                 69***************9999*********999.44 PP

  == domain 8  score: -3.1 bits;  conditional E-value: 1.4
                 -SS---E-S- CS
       LRR_4   9 snNqltdipl 18 
                 s N++ ++p+
  CCD26426.1 820 SYNCIGELPF 829
                 2588888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1395  (0.0778069); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.42
# Mc/sec: 6451.04
//
Query:       CCD26427.1  [L=426]
Description: hypothetical protein NDAI_0H02530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-58  196.7  24.2    1.6e-42  146.0   7.7    2.6  3  Nucleoside_tran  Nucleoside transporter


Domain annotation for each model (and alignments):
>> Nucleoside_tran  Nucleoside transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.2      0.21   3.8e+03     158     163 ..      87      92 ..      41     137 .. 0.47
   2 !   64.5   8.5   5.6e-22     1e-17       2      86 ..     141     232 ..     140     240 .. 0.91
   3 !  146.0   7.7     9e-47   1.6e-42     131     308 ..     246     423 ..     230     424 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 0.21
  Nucleoside_tran 158 vtlsvf 163
                      +   +f
       CCD26427.1  87 ISSMLF 92 
                      222222 PP

  == domain 2  score: 64.5 bits;  conditional E-value: 5.6e-22
  Nucleoside_tran   2 akvvlins.fnallqnslfglagelpseYtqavliGqalaGvlvslvmi.lavasnse.....lkesallYFivsivvvivcvilllvlkkl 86 
                      + +v+i+s ++a++qn+++++a++ + e++q v++Gqa+aGvl+s+v++ +a++s ++      + ++l YF ++ +v+i+c+ l++v++  
       CCD26427.1 141 MLLVSISSiATAMTQNGIMAIANVYGGEFSQSVVMGQAVAGVLPSVVLLfVAFVSPDNdgsssSTGGILFYFLTTAIVSIICICLYKVSNVD 232
                      667888888**************************************99899998777788878999*******************998765 PP

  == domain 3  score: 146.0 bits;  conditional E-value: 9e-47
  Nucleoside_tran 131 eenvfvllkvilakikvlalsvvlvftvtlsvfpavtaevkssilptkee.yfipvllfllfNlfdllGrvlaavimwpdq..dsrllvvlvll 221
                      e++  ++++v+++k+k l+ s++++f+vtl +fp+++ ++    lp  ++ y++  l+f+++Nl+dl+Grv+a+ + ++d+  ++  +++++ l
       CCD26427.1 246 ENKTEIPFNVLFKKLKWLVCSIFMTFMVTL-IFPVFASTISVTRLPITNSqYIP--LIFTVWNLGDLYGRVIADLPTFRDPnfTPLRIFIYSNL 336
                      3334459*******************7765.9****777776668888886999..99**********************999999******** PP

  Nucleoside_tran 222 Rllfiplfllcnakpq.sralpvlfesdllfillmllfalsnGYlasllmmlaPkkvk.pkeketAgaltsfflvlGLalGavlsflfr 308
                      R++ +p+f+ + +  + ++  +++f  d+ +ill+++f+++nG+++s+++m++P+ v+ ++eke+Ag +t++f+++GLa+G++ls++++
       CCD26427.1 337 RIIMVPIFFYFAHYYKdTKSRTIFF--DMGYILLQFIFGVTNGHVISISFMKVPETVDtEEEKEAAGGFTNIFVATGLAAGSILSYMVV 423
                      **********999988777778887..889****************************999*************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1105  (0.061632); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3138.56
//
Query:       CCD26428.1  [L=757]
Description: hypothetical protein NDAI_0H02540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-96  321.7  16.8    3.1e-96  321.7  16.8    1.8  3  PMT       Dolichyl-phosphate-mannose-protein mannosyltransfer
    2.6e-60  203.5  10.4    2.6e-60  203.5  10.4    2.6  2  PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltra
    1.7e-20   73.7   0.2    3.3e-20   72.7   0.2    1.4  1  MIR       MIR domain
  ------ inclusion threshold ------
      0.045   13.7   9.3       0.24   11.3   2.3    2.6  2  DUF2723   Protein of unknown function (DUF2723)


Domain annotation for each model (and alignments):
>> PMT  Dolichyl-phosphate-mannose-protein mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.7  16.8    7e-100   3.1e-96       2     245 .]      69     312 ..      68     312 .. 0.99
   2 ?   -3.2   0.2       1.1   5.1e+03     205     205 ..     635     635 ..     608     704 .. 0.56
   3 ?   -3.8   0.1       1.7   7.7e+03     177     198 ..     704     725 ..     699     726 .. 0.71

  Alignments for each domain:
  == domain 1  score: 321.7 bits;  conditional E-value: 7e-100
         PMT   2 iltllallirlwrlslpnsvvfdevhfgkfasdYlehsffmdvhpplgkmllalggyLagkdgnftfesigaeyypenvpyvslRlfsallgslivplv 100
                 i+t la++ir+++++ +  vv+de+hfgkf+s+Yl+h+f++dvhpplgkml++l+gyLag++g+f+f+s   e+yp++v+ v++R+f+a +++++vp++
  CCD26428.1  69 IFTGLAIFIRMYKIGANDRVVWDEAHFGKFGSYYLRHEFYHDVHPPLGKMLVGLSGYLAGYNGSFDFDSG--EKYPDYVDFVKMRIFNAAFSAMCVPVA 165
                 7899******************************************************************..9************************** PP

         PMT 101 yltllelgfskltallaallvllenslitlsryilldspLlfftllsmyclvkfe..rkapfsrswwlwllltgvalglavsvKwvglftvllvgllli 197
                 y+t + +gfs   ++++++lvl ens+ tl+r+illds+Llfft++s++c+v f+  +k+pfsr+ww+wl+ltg++lg+a+svK+vglf+++lvg++++
  CCD26428.1 166 YYTGKAIGFSLPSVWFFTVLVLCENSYTTLGRFILLDSMLLFFTVASYMCFVIFHnqKKKPFSRKWWKWLILTGISLGCAISVKMVGLFVITLVGIYTV 264
                 *********************************************************99**************************************** PP

         PMT 198 welwqllgdkslllksivkhllaralaliviPvtlylavftvhfwllf 245
                 ++lw+ lgdks+++k+++ h+lar+ +li+iP++++l +f++hf+ll+
  CCD26428.1 265 VDLWNFLGDKSMSWKTYIFHWLARIACLIIIPFLVFLGCFKIHFDLLY 312
                 *********************************************997 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
         PMT 205 g 205
                 +
  CCD26428.1 635 Y 635
                 3 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 1.7
         PMT 177 lavsvKwvglftvllvgllliw 198
                 l+++vK v+ +t +  ++ ++w
  CCD26428.1 704 LGCLVKTVAYLTAFTSVIGCFW 725
                 6788888888777666665555 PP

>> PMT_4TMC  C-terminal four TMM region of protein-O-mannosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   5.7       2.2   9.9e+03      21      41 ..     223     242 ..     204     312 .. 0.61
   2 !  203.5  10.4   5.7e-64   2.6e-60       1     199 []     547     750 ..     547     750 .. 0.94

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 2.2
    PMT_4TMC  21 eshpyaSepyeWplllrgisy 41 
                 ++ p++ ++++W++l+ gis+
  CCD26428.1 223 KKKPFSRKWWKWLILT-GISL 242
                 3578888899998764.5554 PP

  == domain 2  score: 203.5 bits;  conditional E-value: 5.7e-64
    PMT_4TMC   1 Flkkflelqkamltsnnaltes....hpyaSepyeWplllrgisywtkneekkqiyllGNpvlwwlstiallvfvllllalllrrqrgvkdl..eeeet 93 
                 F+k+f++l+ am+++nnal+++    + +aS++++Wp+l+ g++ +++ +++ +++llG pv +w+s++a++ +++++++lllr+qr++ dl   ++ +
  CCD26428.1 547 FFKDFIHLNLAMMATNNALVPDadkyDLLASSAWQWPTLYLGLRICGWGNDTVKYFLLGTPVSTWASSVAIIGLMAFIVILLLRWQRQYTDLrnANDLN 645
                 9********************668888889**************************************************************5444444 PP

    PMT_4TMC  94 rllnsglflllgwalhylPfflmgRvlflhhYlpAllfailllaalldfllkslkkslkkkklvklivvvvllvlviavFiffspltyGlpgtseevkk 192
                 ++l+ g+++llgw lhy Pf++m+Rv+++hhYlpAl+fa+++l ++ld  lk+++ s+    lvk++++++ +++vi++F++fsp+++G++g++e++ +
  CCD26428.1 646 TFLMGGFYPLLGWGLHYTPFVIMSRVTYVHHYLPALYFALIILTYVLDASLKRVSGSK-LGCLVKTVAYLTAFTSVIGCFWYFSPISFGMEGPKENYAY 743
                 4*************************************************97666555.3489************************************ PP

    PMT_4TMC 193 lkwlssW 199
                 l+wl++W
  CCD26428.1 744 LNWLPTW 750
                 ******* PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.2   7.4e-24   3.3e-20      11     182 ..     359     519 ..     358     524 .. 0.91

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 7.4e-24
         MIR  11 LfHshqdeyltiseqqqkqevflritlypsadaanssraLWeievvqkd......awrgglikwgkvyRlkHlaTgryLaseeekksplseseddqkev 103
                 L Hsh + y+++s qqq       +t y  +d +n+    W     +        ++ ++++  +++yRl H  Tg+ L+s+    +p+s   + q ev
  CCD26428.1 359 LLHSHVQGYPEGSHQQQ-------VTAYSYKDPNNE----WFFDRARGLpnwnenETDVEFVLAESTYRLVHKSTGKSLHSHPV-AAPIS---KTQWEV 442
                 78***************.......************....***9999877666667799*************************.99999...5599** PP

         MIR 104 sayglegfegdnDk..veifekksttgmksaklvprdsyvrlqHvvtgcwLhstsvklkkekfekvqqkvicakekedkea 182
                 s yg  ++ +++D+  +e++  ++   +++ kl p ++ +rl H   +c+L  t  +l++++f+  q +v c k+  ++++
  CCD26428.1 443 SGYGDAEIGDQRDNwiIEVV--DQRGSENTTKLHPLTTSFRLYHPDMDCYLAQTGSQLPEWGFK--QLEVACMKNPFKRDK 519
                 ********999999555555..788888899*********************************..*******99777765 PP

>> DUF2723  Protein of unknown function (DUF2723)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.3   5.4e-05      0.24     104     161 ..     204     264 ..     203     270 .. 0.76
   2 ?    5.7   0.7    0.0028        13     108     160 ..     620     675 ..     609     682 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 5.4e-05
     DUF2723 104 lsslftalvlwlilkweeeadekrsd...rwlvliayligLslgvhllnllllpaiallyy 161
                 +  +ft +   +++ ++++++++ s    +wl+l  + +g +++v+++ l ++  + +  +
  CCD26428.1 204 MLLFFTVASYMCFVIFHNQKKKPFSRkwwKWLILTGISLGCAISVKMVGLFVITLVGIYTV 264
                 5566776666666667777776555567899*******************99998877665 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.0028
     DUF2723 108 ftalvlwlilkweeeadekrsd...rwlvliayligLslgvhllnllllpaially 160
                 ++a ++ l+l+w++++++ r+     ++++  +   L+ g h + ++++  + ++ 
  CCD26428.1 620 LMAFIVILLLRWQRQYTDLRNAndlNTFLMGGFYPLLGWGLHYTPFVIMSRVTYVH 675
                 68999**********99744444578999999999*******99999888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.45
# Mc/sec: 5067.29
//
Query:       CCD26429.1  [L=1404]
Description: hypothetical protein NDAI_0H02550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-41  140.8   0.8    5.1e-41  140.8   0.8    2.5  2  RasGEF    RasGEF domain
    5.1e-12   46.0   0.6    5.1e-12   46.0   0.6    3.3  3  RasGEF_N  RasGEF N-terminal motif


Domain annotation for each model (and alignments):
>> RasGEF  RasGEF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.18   1.6e+03      81     106 ..     142     167 ..      78     219 .. 0.67
   2 !  140.8   0.8   5.7e-45   5.1e-41       2     177 .]    1164    1354 ..    1163    1354 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.18
      RasGEF  81 nNfnslmailsaLqsspvsrLkktwe 106
                  N n+l++ + ++  s++ +Lkk+w 
  CCD26429.1 142 LNNNTLYQNCPTIVRSSIINLKKAWI 167
                 34455555555555555555555543 PP

  == domain 2  score: 140.8 bits;  conditional E-value: 5.7e-45
      RasGEF    2 lAeqltlieaelfskikpeellgsawsked...........rs...pnveaviarfnrlsnwvaseilseeslkkRakviekfikiakecrklnNfn 84  
                  +Aeq+tlie el+++i++++ll+ +++ +            r+   + ++  i+rfn +++w++sei+ ++++k R ++i++fi++a++cr ++N+n
  CCD26429.1 1164 IAEQMTLIEEELLCEIDWKDLLELKIEYKGppvtswlqlliRNeslSGIDLAISRFNLTVDWIISEIVLTTDMKLRRNTIQRFIHVAEHCRIFQNYN 1260
                  9**********************98888778888887777733334558899********************************************* PP

      RasGEF   85 slmailsaLqsspvsrLkktweavskkslktleeleelmspennfknyrealkssasskpciPflglyltdltfieegnpdtlegk.iNfeKrr 177 
                  +lm+i+ aL+s+ v++ +++w+ +++ +l t+e+l+e+ s + n++++r+ l+s+ + k+ciPf+ +yl+dl  +++++   +e+k iN++K++
  CCD26429.1 1261 TLMEIVLALSSTIVQKFTEAWRLIEPGDLLTWEKLKEIPSLHGNYSTIRNLLNSVDPMKGCIPFIVVYLSDLSLNSQKHDWIVEDKiINYNKFQ 1354
                  ************************************************************************999888877779999*****85 PP

>> RasGEF_N  RasGEF N-terminal motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.6   5.7e-16   5.1e-12       6     105 .]      40     141 ..      35     141 .. 0.82
   2 ?   -2.7   0.1      0.78     7e+03      64      91 ..     363     391 ..     342     411 .. 0.63
   3 ?    0.6   0.0     0.073   6.5e+02      21      50 ..    1339    1368 ..    1318    1388 .. 0.67

  Alignments for each domain:
  == domain 1  score: 46.0 bits;  conditional E-value: 5.7e-16
    RasGEF_N   6 tlekLierLtsk.rlldddfletFLltyrsFttpaeLlekLierye..inppnnlesdesnswnsksssnirl.rvlsvlkewvenhyy.dfsddkall 99 
                  + +Li +L s+ +  d++ + +F+l yr+F++p eL ++Li+r++  in+  ++ ++   + + k+  +i l r++ ++++ + nhy  df +d+ l+
  CCD26429.1  40 DIIALIIYLSSPiDPIDYTIFADFFLIYRNFISPIELHQLLISRFRwcINEIIDHDAS---NGERKKIGEIALvRTFVLIRHSLLNHYIqDFLQDYSLR 135
                 5679*****************************************9874444444444...2233444457778*******999888888********* PP

    RasGEF_N 100 sklekf 105
                 ++++kf
  CCD26429.1 136 LQVIKF 141
                 **9998 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.78
    RasGEF_N  64 swnsksssn.irlrvlsvlkewvenhyyd 91 
                 s + ++ss  ++   l +l++w +nh ++
  CCD26429.1 363 SLQGTTSSSlLHRSALGLLNKWKKNHNHN 391
                 33333333225557888888888888765 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.073
    RasGEF_N   21 dddfletFLltyrsFttpaeLlekLierye 50  
                  +d  +e+ +++y+ F t  +++++ i+r +
  CCD26429.1 1339 HDWIVEDKIINYNKFQTNVQIVKNFIQRVQ 1368
                  555677777888888888888888888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1404 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       757  (0.0422221); expected 358.6 (0.02)
Passed bias filter:                      295  (0.0164538); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.84u 0.28s 00:00:01.12 Elapsed: 00:00:00.49
# Mc/sec: 8627.80
//
Query:       CCD26430.1  [L=1373]
Description: hypothetical protein NDAI_0H02560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.7e-81  271.7  26.8    6.7e-81  271.7  26.8    3.1  3  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    5.1e-25   87.0   5.5    1.4e-24   85.6   5.5    1.8  1  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    7.3e-11   42.7   0.4    0.00015   22.1   0.1    3.3  3  Hydrolase        haloacid dehalogenase-like hydrolase
      5e-10   39.3   0.0    3.8e-09   36.5   0.0    2.3  2  Cation_ATPase    Cation transport ATPase (P-type)
      1e-06   28.4   0.1    2.3e-06   27.2   0.1    1.6  1  E1-E2_ATPase     E1-E2 ATPase
    0.00017   21.4   1.1      0.032   14.0   0.1    2.7  2  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.5      0.45   1.4e+03     109     164 ..     200     255 ..     188     260 .. 0.66
   2 ?   -0.6   4.3       0.3     9e+02     179     245 ..     440     517 ..     397     521 .. 0.57
   3 !  271.7  26.8   2.2e-84   6.7e-81       1     248 [.     974    1226 ..     974    1227 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.45
  PhoLip_ATPase_C 109 lfnlktfll.wileglyqsliifflsylvlddssfsdgktndlqlfgtlvftalvlv 164
                       +n+ tfl  ++++ + + + +ffl+++++++   +   tn + ++gtl+++ +v +
       CCD26430.1 200 KYNVATFLPkFLFQEFSKYANLFFLCTAAIQQVP-HVSPTNRYTTVGTLMVVLCVSA 255
                      5666666641455555555557777777766543.4677888888888888888865 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.3
  PhoLip_ATPase_C 179 iliililgsillyflflllyssllps..........ssefygvleelfss.psfwlvlllvvvvall.pdllikvlkrt 245
                      ++ii+++g + ++++++  + ++++s          + e+++ +  +f++ ++fw+++  +v ++l+    lik+++++
       CCD26430.1 440 MQIIALFGVL-IVLILISSLGNVIMSatkanhmsylYLEGVNKVGLFFKDfLTFWILFSNLVPISLFvTVELIKYYQAY 517
                      3334444432.22222222222222223334656667777777888999989999996555555544155577887765 PP

  == domain 3  score: 271.7 bits;  conditional E-value: 2.2e-84
  PhoLip_ATPase_C    1 vraSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsae 92  
                       +r++D+a++qF++L++LLlvhG wsy+Ris  ily+fyKn++++++qfw+ f n+fsgqs++esw+l+ yn++ft++p++v+g+fdq vs++
       CCD26430.1  974 ARSADIAVGQFKYLRKLLLVHGAWSYQRISVAILYSFYKNTALYMTQFWYVFANAFSGQSIMESWTLSYYNVFFTVFPPFVIGVFDQFVSSR 1065
                       69****************************************************************************************** PP

  PhoLip_ATPase_C   93 lllkyPelYklgqknklfnlktfllwileglyqsliifflsylvlddssfs..dgktndlqlfgtlvftalvlvvnlkvaletktwtlilii 182 
                       ll++yP+lYklgqk+++f +  f++wi++g+y+s ++f+ ++l++++ +    +g+ +d++++g+ ++t+++l+v+ k al t+ wt ++++
       CCD26430.1 1066 LLERYPQLYKLGQKGQFFLVAIFWGWIVNGFYHSGVVFIGTMLFYRYGMALnmHGELADHWTWGVSIYTTSILIVLGKAALVTNQWTKFTLF 1157
                       ********************************************888776679*************************************** PP

  PhoLip_ATPase_C  183 lilgsillyflflllyssllps...ssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffp 248 
                       +i gs++++++f+ +y s++p+   s e++g+++++++s +fwl+l++++v+al++d+++k+++r++ p
       CCD26430.1 1158 AIPGSFIFWLIFFPIYGSIFPYaniSREYFGIVKHTYGSGTFWLTLIVLPVFALMRDFIWKYYRRMYEP 1226
                       ********************99**99999*************************************998 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   5.5   4.7e-28   1.4e-24       1      67 []     178     244 ..     178     244 .. 0.98

  Alignments for each domain:
  == domain 1  score: 85.6 bits;  conditional E-value: 4.7e-28
  PhoLip_ATPase_N   1 vyindreenekkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqisplspvtti 67 
                      ++indr+en+k  y +N+IsT+KY+++tFlpk+Lf++F+++aNl+FL++a +q++P++sp++++tt+
       CCD26430.1 178 IFINDRAENAKYGYNDNYISTTKYNVATFLPKFLFQEFSKYANLFFLCTAAIQQVPHVSPTNRYTTV 244
                      689*******99*****************************************************96 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.037   1.1e+02       2      18 ..     549     565 ..     548     591 .. 0.85
   2 !   22.1   0.1     5e-08   0.00015     107     149 ..     797     837 ..     762     878 .. 0.79
   3 !   13.5   0.0   2.3e-05     0.068     157     209 ..     905     959 ..     871     960 .. 0.80

  Alignments for each domain:
  == domain 1  score: 2.9 bits;  conditional E-value: 0.037
                 SEEEEESBTTTBCHHHH CS
                 xxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttgeps 18 
                 + ++ Dk+GTLt+  ++
  CCD26430.1 549 EYIFSDKTGTLTRNIME 565
                 67899*******87665 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 5e-08
                 HHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 107 alavftiadplkvkpeaaeavasLkaagievvlltgdnpetae 149
                 + +  +i+d+  + +e+ +++++L++agi++++ltgd +eta 
  CCD26430.1 797 LIGATAIEDK--LQDEVPKTIHTLQEAGIKIWVLTGDKQETAI 837
                 5667788899..****************************996 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 2.3e-05
                 GGGE.SEEEEHHCESSTTTSHHHHHHHHHHHTST.GGGEEEEESSHHHHHHHHHT CS
                 xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxx RF
   Hydrolase 157 ddyf.daviasdietvakpspegkvaaireLqgk.peevamVGDgvnDaaalaaA 209
                 ddyf ++      +++  +sp +k  +++  + k  +  +++GDg+nD+++++aA
  CCD26430.1 905 DDYFlAIAKLCKSVVCCRVSPLQKALVVKMVKRKtNSLLLAIGDGANDVSMIQAA 959
                 4777444444444458999************96647889**************99 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.3e-12   3.8e-09      13      89 ..     637     726 ..     625     728 .. 0.84
   2 ?   -0.7   0.0      0.53   1.6e+03      15      29 ..     824     838 ..     800     866 .. 0.85

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1.3e-12
  Cation_ATPase  13 ekdevkllGnktEsALlvlaekl..............gldteelreetkkvqeipFnssrKrmsvvlklepekkvrlyvKGApeiilkrCt 89 
                    + + +    +++E AL++  + l               ++ ++ ++ ++ +++ +Fns+rKrms +++  p++++rl++KGA  +il+r +
     CCD26430.1 637 DGSIKYQAASPDEGALVEGGASLgykfiirkpssvtiLIEDSNEEKTYELLNVCEFNSTRKRMSAIFRF-PDGSIRLFCKGADTVILERLD 726
                    55555667789999999999999888999999998887777888889*********************9.8****************9965 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.53
  Cation_ATPase  15 devkllGnktEsALl 29 
                    + + l+G+k E+A+ 
     CCD26430.1 824 KIWVLTGDKQETAIN 838
                    67889********85 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   7.9e-10   2.3e-06      22     134 ..     294     458 ..     272     511 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.2 bits;  conditional E-value: 7.9e-10
                   G--TTSEEEEETT-B--SEEEEEEE-S.....EEE-TTTS---S-EE-................................................G CS
  E1-E2_ATPase  22 elvpGDivllkagdrvpaDgrivegsa.....evdesaLTGEslpvek................................................e 65 
                   ++++GDi+++++++ +paD +++++s+      ++++ L GE     k                                                +
    CCD26430.1 294 DIKVGDIIKVNSEEAIPADLIVLSSSEpeglcYIETANLDGETNLKIKqsriettnlmdsrsivtlnggkvnsehpnsslytfegtlefnnqkiplS 390
                   799*********************777767779*********************************************************9999999 PP

                   -TTEE-TT-EEEE.-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHH.HHHHHHHHHHHHHHHHHH CS
  E1-E2_ATPase  66 kgdmvfsGtvvvs.geakavVtatgedtelgkiarlveeakskktplqkkld.klgkvlvpvvlliallvf 134
                    ++m+  G++ ++ g + + V+ tg +t+l + a+++     k+t ++++++ ++++ + ++++li++  +
    CCD26430.1 391 PEQMILRGATLKNtGWIFGLVIFTGHETKLMRNATATPI---KRTAVERIINmQIIALFGVLIVLILISSL 458
                   999**99999999899999********998776665544...46667766662344445555555555443 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.1    0.0052        16      15     104 ..     806     893 ..     802     917 .. 0.82
   2 !   14.0   0.1   1.1e-05     0.032     205     226 ..     942     963 ..     926     970 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.0052
                  ---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHHHHHCCCCSEEEEGGGTEEECTTTEEEEE--B-HHHHHHHHHHHHHTTCEEEEEESS CS
  Hydrolase_3  15 kisektkeaikklkekgikvviATGRslravlpvleelgldlpvialNGaliddekgkilykstiskedvkeiikllkennveillyted 104
                  k++++  ++i+ l+e+gik+ + TG + ++++++  +    l    +N  +i++e+++  +++ ++k ++ + +kl +++  +++l+ + 
   CCD26430.1 806 KLQDEVPKTIHTLQEAGIKIWVLTGDKQETAINIGMSCR--LLTEEMNLLIINEETKEDTKQNMLDKITALKEHKLSQHEMNTLALVIDG 893
                  67889999**********************999988776..5577788888899999999999999988888888887777666665554 PP

  == domain 2  score: 14.0 bits;  conditional E-value: 1.1e-05
                  GEEEEESSGGGHHHHHHSSEEE CS
  Hydrolase_3 205 eviafGDgeNDieMLeaaglgv 226
                    +a+GDg ND++M++aa +g+
   CCD26430.1 942 LLLAIGDGANDVSMIQAAHVGI 963
                  578***************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       779  (0.0434492); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.85u 0.27s 00:00:01.12 Elapsed: 00:00:00.46
# Mc/sec: 9038.13
//
Query:       CCD26431.1  [L=265]
Description: hypothetical protein NDAI_0H02570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-87  292.9   9.4    2.1e-87  292.8   9.4    1.0  1  Saw1      Single strand annealing-weakened 1


Domain annotation for each model (and alignments):
>> Saw1  Single strand annealing-weakened 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.8   9.4   1.1e-91   2.1e-87       1     244 []       1     257 [.       1     257 [. 0.97

  Alignments for each domain:
  == domain 1  score: 292.8 bits;  conditional E-value: 1.1e-91
        Saw1   1 MaptiatvkisdklvLPlriFinrkqvl.......tkltkdtifeaPllsnnsivlLKspivriyLSnedlkdLvneikddllliiyelassevkeqvl 92 
                 M++++at++is++++LP+riFinrk++l       ++++++t+f+aPllsnnsi++L+spi+riyLSn+d+++L+ eikd+++li+yel+s+++ ++vl
  CCD26431.1   1 MTLSVATIRISKRTILPIRIFINRKRLLgnkssdpNNNDEKTSFQAPLLSNNSIICLRSPITRIYLSNQDMERLCLEIKDTIILILYELTSPKLLKNVL 99 
                 99************************************************************************************************* PP

        Saw1  93 sklkigqsldfkeevlskllkeeeesk...ltshittieriskvkYkLhfkknweldifisdvkkLekirnlllfk.entgaaetlglnskekilllek 187
                 +kl+ig+s+df+++v+++++++++++    l++ + ti+risk+kYkLhfk+nweldifi+++k L+kir++llf+ e+ g a++lgl  k+kill+e+
  CCD26431.1 100 NKLRIGSSMDFQKDVIPNIIDASSSDGnkfLNVPVVTITRISKTKYKLHFKQNWELDIFIKSFKLLTKIRHYLLFTdETIGVAQSLGLVPKRKILLMEQ 198
                 *******************99988777789**********************************************9999******************* PP

        Saw1 188 .........qlneeandkpeileeaeddkqeraseeeevkdekKpkikfkYkpvinlgecidihvl 244
                          ++++e+n++p il+e+e++         ++++e+Kp i+fkY+p+i+l+eci++hvl
  CCD26431.1 199 ksskiatddTESNEDNTTPYILQENEEN-------GGQEEEESKPIITFKYNPIITLNECISVHVL 257
                 9999999888888999999999999888.......88899*************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2029.75
//
Query:       CCD26432.1  [L=639]
Description: hypothetical protein NDAI_0H02580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-10   39.7  16.1      6e-10   39.7  16.1    4.7  3  Hph              Sec63/Sec62 complex-interacting family
  ------ inclusion threshold ------
       0.23   11.8   0.9       0.47   10.9   0.1    1.9  2  Trns_repr_metal  Metal-sensitive transcriptional repressor


Domain annotation for each model (and alignments):
>> Hph  Sec63/Sec62 complex-interacting family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   4.9      0.42   3.7e+03      51      81 ..      55      85 ..      24     137 .. 0.53
   2 !   39.7  16.1   6.6e-14     6e-10       5     183 ..     183     349 ..     180     352 .. 0.67
   3 ?  -14.9  28.2         2   1.8e+04     116     171 ..     390     448 ..     354     467 .. 0.73

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.42
         Hph 51 ripthlseeaarvsaaaagtskpadkflkks 81
                + p  +s++    sa+++++  p   ++++s
  CCD26432.1 55 SNPSSSSSSSLSSSASSNAKTSPGPPMQNSS 85
                3333333333333333333333333333332 PP

  == domain 2  score: 39.7 bits;  conditional E-value: 6.6e-14
         Hph   5 pvipdytsasTgkFSdcmFntelekqrsrstrkksstsnvdasfksripthlseeaarvsaaaagtskpadkflkkslkpadneykdknqeqi...... 97 
                 ++  dy s++Tg+FS+cmF++  + +  ++t   +s+ n++     +i  +l+ ++     + ++ s p ++ ++k+   ++  +k++  e++      
  CCD26432.1 183 TKQVDYSSSNTGTFSECMFKSTDDFNAFNKTD--DSLANLEGE-NDAISAKLGLSNSSRNKLRSSSSSPYERDKNKK--NLFIDIKGNIVEEVykvtri 276
                 5667****************777777666654..455544433.356666666666666666666666766666665..55566666655555544333 PP

         Hph  98 ksfsnSynkdkKrLVnqFLksiekssskplessenakaFenkrsvgknsvkvsshshisdnssadkdlslqsLlyhdLelsskksq 183
                 k + nS   dk rL+nqFL++ ++     l+ss     F  + +         ++s      + +++ slqsLlyhdLe++s   +
  CCD26432.1 277 KKSFNSL-HDKDRLINQFLQPRNG-----LPSSSLQLKFSGTMTP------LDHRSGFTGSLD-HSNKSLQSLLYHDLENPSTTTS 349
                 4444444.6999********9765.....5577777788873333......445555555555.99*************9987655 PP

  == domain 3  score: -14.9 bits;  conditional E-value: 2
         Hph 116 Lksiekss..skplessenakaFenkrsvgknsv.kvsshshisdnssadkdlslqsLl 171
                 L+s+ +ss  s++   s  ++ F + +s++  s+ ++++h   + +ss+ +d  l++ l
  CCD26432.1 390 LRSSASSSrsSSSESISSHSSSFTSDSSASVSSKsSSIRHTNSPGKSSSFEDSELNDAL 448
                 66666666644444556778888888888888888888999999888866666666544 PP

>> Trns_repr_metal  Metal-sensitive transcriptional repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   5.3e-05      0.47       9      26 ..     517     534 ..     513     539 .. 0.91
   2 ?   -2.7   0.1      0.87   7.8e+03      49      70 ..     567     589 ..     552     594 .. 0.57

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 5.3e-05
                      HHHHHHHHHHHHHHHHTT CS
  Trns_repr_metal   9 LkrieGQvrgiqrmieed 26 
                      Lkri+GQ+  +q+ +e+d
       CCD26432.1 517 LKRIRGQIINLQKLVEND 534
                      9***************98 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 0.87
                      HHHHHHHHHHHHHHHHH.HHHHH CS
  Trns_repr_metal  49 elledhlkhcvaeaiee.ekiee 70 
                      e le  +k+c  +  ++ e++++
       CCD26432.1 567 EELEIRMKNCADRLNQQkETMKK 589
                      44666677777633322233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2042  (0.113894); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        23  (0.00128284); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.90u 0.34s 00:00:01.24 Elapsed: 00:00:00.47
# Mc/sec: 4054.58
//
Query:       CCD26433.1  [L=1482]
Description: hypothetical protein NDAI_0H02590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.4e-268  892.7  17.0   1.4e-268  892.7  17.0    2.5  3  Myosin_head      Myosin head (motor domain)
    8.9e-19   67.7   2.1    8.9e-19   67.7   2.1    3.7  4  DIL              DIL domain
    0.00011   21.6  18.0        1.1    9.3   1.2    6.5  6  IQ               IQ calmodulin-binding motif
     0.0044   16.8   0.5      0.012   15.5   0.1    2.1  2  Myosin_N         Myosin N-terminal SH3-like domain
     0.0055   16.6   1.2      0.021   14.7   0.0    2.6  2  RsgA_GTPase      RsgA GTPase
     0.0064   16.8   2.7      0.027   14.8   0.0    3.3  3  AAA_22           AAA domain
  ------ inclusion threshold ------
      0.019   14.0   0.0       0.05   12.6   0.0    1.6  1  T2SSE            Type II/IV secretion system protein
      0.021   15.4   0.1      0.021   15.4   0.1    3.1  1  ABC_tran         ABC transporter
      0.028   14.5   0.0       0.18   11.8   0.0    2.7  1  CbiA             CobQ/CobB/MinD/ParA nucleotide binding domai
      0.043   14.2   0.0       0.17   12.2   0.0    2.0  1  AAA_16           AAA ATPase domain
       0.05   13.3   0.0       0.13   11.9   0.0    1.7  1  Sigma54_activat  Sigma-54 interaction domain
       0.12   13.1   0.4        1.4    9.7   0.0    3.0  2  DUF2281          Protein of unknown function (DUF2281)


Domain annotation for each model (and alignments):
>> Myosin_head  Myosin head (motor domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  892.7  17.0  9.1e-272  1.4e-268       2     677 .]      85     785 ..      84     785 .. 0.94
   2 ?   -3.9   3.5       1.9   2.8e+03     460     569 ..     904    1010 ..     881    1019 .. 0.60
   3 ?   -2.8   1.2      0.88   1.3e+03     480     533 ..    1185    1244 ..    1086    1277 .. 0.55

  Alignments for each domain:
  == domain 1  score: 892.7 bits;  conditional E-value: 9.1e-272
                  SBGCGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--S.TSSHHHHHHHTTS-GGGSSSSHHHHHHHHHHHHHHHTSEEEEEEESSTTSSH CS
  Myosin_head   2 edlveLsllneasvlenlkkRykkdliYtysglvlvavnPykklk.iysedvikaykgkkreelpPHifaiadeayrslledkenqsilisGEsGAGK 98 
                   dl+ Ls+lne++vl+++k+Ry+++ iYtysg+vl+a+nP+ +++ +y++++i++y  k+ree+ PHifaia+ea+r++ +++enq+i++sGEsGAGK
   CCD26433.1  85 HDLTFLSYLNEPAVLHAIKQRYAQNCIYTYSGIVLIAINPFANIDeLYTQEMIQQYARKTREEMVPHIFAIAEEAFREMSNKHENQTIIVSGESGAGK 182
                  699******************************************9**************************************************** PP

                  HHHHHHHHHHHHHHSSSSSC........TCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEECE-GGGGT---TT- CS
  Myosin_head  99 teatKkvlqylasvaeskek........veeeeleekilqsnPilEafGnAktvrndnssRFGKfieiefdakgkiagakietYLLEksRvvkqakeE 188
                  t+++K++++++asv+e  ++         e++ +e+kil++nPi+EafGnAkt+rndnssRFGK+++i fd++ ki+g+ki+tYLLE+sR+v+q k+E
   CCD26433.1 183 TVTAKYIMRFFASVEEDISAsdgdeahqLEMSDIEKKILATNPIMEAFGNAKTTRNDNSSRFGKYLQILFDSNKKIIGSKIKTYLLERSRLVYQPKSE 280
                  ***************998888999999999******************************************************************** PP

                  -SBHHHHHHHHCSTHHHHHHTT--TCCGSTTTTTTSSSSBTTS-HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHCTSSEEEECTTSSEEESSH CS
  Myosin_head 189 RnyHiFYqllagaseeekkelkledvkdyaylsqsgeltvdgiddseefketkkaldilglseeeqkeifrivaailhlGniefkkeakdeqavlede 286
                  RnyHiFYqll+g++++ +++l+l++++dy yl+q++++++ g+dd eef+ t+++l+++g+++  q eif+++aa+lh+Gnie+kk+++++ +v++++
   CCD26433.1 281 RNYHIFYQLLKGLTPDIRESLHLTEPSDYFYLNQGESIEIIGMDDIEEFNVTSDSLSLIGFTSGMQFEIFKVLAALLHIGNIEIKKTRNEA-SVSSED 377
                  ***************************************************************************************9885.888889 PP

                  HHHHHHHHHHTS-HHHHHHHHHSEEEEETTEEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS..-S-SEEEEEEEEE-B---SSB-H CS
  Myosin_head 287 eklekaaellgvdaeelekalvkrriktgkevvskalnveqaevardalakaiyerlFdwlverinkslekkk..eekksfiGvLDiaGFEifeknsF 382
                   +l  a+ellg+d ++++k++vk++i+t++e+++++ln +qa v+rd++ak+iy+ +F+ lve+in++l++    e+ +sfiGvLDi+GFE+fe+nsF
   CCD26433.1 378 PHLIYACELLGIDPSSFAKWIVKKQINTRSEKIISNLNFNQACVSRDSVAKFIYSGIFNSLVENINTVLCNPDveESINSFIGVLDIYGFEHFEQNSF 475
                  99*******************************************************************9987446789******************* PP

                  HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSSGCGS-GGGCCHHHHHHHHSSSTSHHHHHHHHHTSTTS-HHHHHHHHHHHHTTST...TEEETTS CS
  Myosin_head 383 EqlcinyvnEkLqqlFnelvlklEqeeYvrEgiewkfidfgldnqaiidLiekkplGilslLdeecllpkatdetfleklvkafskha...kfeksrl 477
                  Eq+ciny+nEkLqq Fn++v+klEqeeY +E+iew+fi+f  dnq++idLie+  +GilslLdee++lp+++de+++ekl+++fsk +    f k+r 
   CCD26433.1 476 EQFCINYANEKLQQEFNKHVFKLEQEEYIQEEIEWSFIEF-NDNQPCIDLIEN-RVGILSLLDEESRLPSGSDESWTEKLYQTFSKPPtnsVFGKPR- 570
                  ****************************************.6***********.5*****************************9987555788888. PP

                  TTTTTEEEEEETTCEEEEE-TTHHHHHH----HHHHHHHHTSSSHHHHHHCCSHCH...........B--.........CSSSECCCCCSBHHHHHHH CS
  Myosin_head 478 kkgeakFiikHyAgkveYevegfleKnkDtlnedlvellksskkkllaelfkeeek...........eakaeakksekkkkkkkkkkkfktvgskfke 564
                    +++kFi++HyA++v+Y+vegf+eKn+Dt+++ ++e+l++++++ l+++++  +k            a+++ ++ + ++ +kk++++++t+g++fk+
   CCD26433.1 571 -FHQDKFIVSHYANDVTYDVEGFIEKNRDTVSDGHLEVLNATTNSTLKSILELLQKetiepntssnsVASTARNSPSPTALNKKTTQRKNTLGFMFKK 667
                  .6999***************************************999998887766678999987754444445555566677778899********* PP

                  HHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHHSSSEEEEHHHHHHHHGGGSTT..SS-SS.SSSHH...HHHHHHH CS
  Myosin_head 565 slaeLmktlestnphfvRCikpnekkkakkldeslvleqlrclGvlegirirraGfpnRitfeefvqrYkllakk..elkkllkedak...kaveail 657
                  sl eLm+t+++tn+h++RCikpn++k+a+k+d+ +vl+qlr++Gvle+iri++aGfp+R+tf+ef qrY+ l+++  e+++l +ed++    ++++il
   CCD26433.1 668 SLVELMQTINETNVHYIRCIKPNSEKEAWKFDNLMVLSQLRACGVLETIRISCAGFPSRWTFDEFGQRYYFLTSTydEWNSLDNEDTNvliPFCKQIL 765
                  ************************************************************************875225655545554322268***** PP

                  HHTTS-GCGEEECSSEEEET CS
  Myosin_head 658 keleldkeeykiGktKiFfr 677
                  +e+  d  +y++G+tKiFf+
   CCD26433.1 766 NETIDDVTKYQVGNTKIFFK 785
                  *******************8 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.9
                   HHHHHHHTTSTTEEETTSTTTTTEEEEEETTCEEEEE-TTHHHHHH----..HHHHHHHHTSSSHHHHHHCCSHCHB--.........CSSSECCC CS
  Myosin_head  460 eklvkafskhakfeksrlkkgeakFiikHyAgkveYevegfleKnkDtln..edlvellksskkkllaelfkeeekeakaeakksekkkkkkkkkk 553 
                   +k v++++ +  f+     k+++  i +H   k + ++ +  +K ++++   +++ e l++   ++++el  + ++  ++++++  ++ +k+++++
   CCD26433.1  904 QKKVRSYKYQRLFKDY---KRSSVVIQSHMRRKAAVKIYELAKKERNSVGhlKTIAEDLQNEVIQFIEELVINIKE--NKKTTDICRQISKEDRTT 994 
                   3333333333333332...334455556788888888888888888777411334444444444555555555333..344444556666777777 PP

                   CCSBHHHHHHHHHHHH CS
  Myosin_head  554 kfktvgskfkeslaeL 569 
                    ++++g ++ ++l++L
   CCD26433.1  995 LKSSTGIQYSKKLQQL 1010
                   7888888998888887 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.88
                   TTTEEEEEETTCEEEEE-TTHH......HHHH----HHHHHHHHTSSSHHHHHHCCSHCH CS
  Myosin_head  480 geakFiikHyAgkveYevegfl......eKnkDtlnedlvellksskkkllaelfkeeek 533 
                   ++++ + + y  +   e+ gf+      + n ++ +++ +e l++s +k   +l+k+ ++
   CCD26433.1 1185 KQNALATNFYWLNNVHEIYGFIyyissrSSNSNAHMKNEIEQLQKSCTKTYLKLYKNCSR 1244
                   334444444444444444444322222234555556666666666666666677777655 PP

>> DIL  DIL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.9   8.8e+03       7      23 ..     427     443 ..     425     451 .. 0.68
   2 ?   -2.4   0.1       3.9   5.8e+03      66      92 ..     854     879 ..     822     920 .. 0.63
   3 ?   -3.3   0.1       7.4   1.1e+04      39      88 ..    1148    1196 ..    1142    1199 .. 0.59
   4 !   67.7   2.1     6e-22   8.9e-19       5     103 ..    1297    1393 ..    1293    1394 .. 0.95

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.9
                 HHHHHHHHHHHHHHHS- CS
         DIL   7 fyfinaelfNrlllrkk 23 
                  +fi   +fN+l+++ +
  CCD26433.1 427 AKFIYSGIFNSLVENIN 443
                 56888889999996644 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.9
                 HHHC-S--HHHHHHHC.TT-TSS-HHH CS
         DIL  66 llqlpkssledlesilrstcpaLnsaQ 92 
                 l+q++ +s++  ++++ +t+++++s Q
  CCD26433.1 854 LIQTKYRSVKVNRDVT-ETLQSITSVQ 879
                 3333333333333444.6666666665 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 7.4
                  HHHHCCTS-.....-GGGGHHHHHHHHHHHC-S--HHHHHHHC.TT-TSS CS
         DIL   39 lledWaeeqgleeaaekhlapliqaaqllqlpkssledlesilrstcpaL 88  
                  ++ d++++ +l +a++k  ++   a++ l++ ++s ++++++l++++  L
  CCD26433.1 1148 IILDYMSKLNLTDAMKKLTTQALMAIEELISSEES-NSKQNALATNFYWL 1196
                  56677777667666666666666666666666653.44444444555555 PP

  == domain 4  score: 67.7 bits;  conditional E-value: 6e-22
                  HHHHHHHHHHHHHHHHHS-SB-HHHHHHHHHHHHHHHHCCTS-.....-GGGGHHHHHHHHHHHC-S--HHHHHHHC.TT-TSS-HHHHHHHHTTB- CS
         DIL    5 qlfyfinaelfNrlllrkklcsrskGlqlrrnlslledWaeeqgleeaaekhlapliqaaqllqlpkssledlesilrstcpaLnsaQlkrllenYr 101 
                  ++++ +n+ lfN+ll + + ++++ G q+  +l+++ +W+ ++++  + +++l+++ q a+llql+ s+led++ ++ + c +L++ Q++ +l +Y+
  CCD26433.1 1297 RILEELNTILFNDLLINTNRLTWEDGYQIDLKLRRIFKWCDSHEIL-SSQEYLNHICQSAKLLQLRLSNLEDFKIVC-EFCYSLTMDQIHTILAKYT 1391
                  68899***************************************86.89************************9999.******************9 PP

                  -T CS
         DIL  102 pe 103 
                  p+
  CCD26433.1 1392 PT 1393
                  96 PP

>> IQ  IQ calmodulin-binding motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.3      0.01        15       2      18 ..     802     818 ..     801     821 .. 0.85
   2 ?    3.1   0.0     0.068     1e+02       8      17 ..     831     840 ..     830     843 .. 0.90
   3 ?    0.9   0.1      0.35   5.2e+02       2      15 ..     850     863 ..     849     866 .. 0.85
   4 ?    4.8   0.1      0.02        30       2      19 ..     873     890 ..     872     892 .. 0.90
   5 !    9.3   1.2   0.00072       1.1       2      21 .]     898     917 ..     897     917 .. 0.93
   6 ?    4.9   0.2     0.018        27       2      19 ..     921     938 ..     920     940 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.01
                 HHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRk 18 
                 k ai IQ ++R+   R 
  CCD26433.1 802 KLAIMIQNRIRMKHYRY 818
                 679*********99885 PP

  == domain 2  score: 3.1 bits;  conditional E-value: 0.068
                 HHHHHHHHHH CS
          IQ   8 QaawRGylaR 17 
                 Q+ +RGy +R
  CCD26433.1 831 QKLIRGYNVR 840
                 9*******99 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.35
                 HHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGyl 15 
                 +a i+IQ  +R  +
  CCD26433.1 850 AASILIQTKYRSVK 863
                 588********865 PP

  == domain 4  score: 4.8 bits;  conditional E-value: 0.02
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                 ++++  Q++ +Gy +++r
  CCD26433.1 873 QSITSVQSQLKGYIVMRR 890
                 68999**********998 PP

  == domain 5  score: 9.3 bits;  conditional E-value: 0.00072
                 HHHHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkryk 21 
                 ka + IQ+ +R y+  + +k
  CCD26433.1 898 KACTMIQKKVRSYKYQRLFK 917
                 8****************997 PP

  == domain 6  score: 4.9 bits;  conditional E-value: 0.018
                 HHHHHHHHHHHHHHHHHH CS
          IQ   2 kaaikIQaawRGylaRkr 19 
                 ++ ++IQ++ R+  a k 
  CCD26433.1 921 RSSVVIQSHMRRKAAVKI 938
                 7889*******9877665 PP

>> Myosin_N  Myosin N-terminal SH3-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   7.8e-06     0.012       1      20 [.       7      26 ..       7      52 .. 0.83
   2 ?   -4.1   0.0        10   1.5e+04      33      39 ..     181     187 ..     172     187 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 7.8e-06
                SEEEEETTSTTS-EEEEEEE CS
    Myosin_N  1 KklVWVpDpkegyvkGeIke 20
                ++++W pD++ g+v  e+++
  CCD26433.1  7 GTRCWLPDEEKGWVGCEVTK 26
                589***********999996 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 10
                 SEEEEEE CS
    Myosin_N  33 GktvtVk 39 
                 Gktvt k
  CCD26433.1 181 GKTVTAK 187
                 8888876 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-05     0.021      56     120 ..     128     190 ..      85     218 .. 0.79
   2 ?   -1.7   0.1       1.6   2.4e+03      43      88 ..     878     921 ..     853     939 .. 0.77

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 1.4e-05
                  GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  56 iDlleeeeeleelkeelealgyevllvsaktkegleelkellkdktsvlvGqSGvGKStLinall 120
                  iD l ++e +++++ ++++  ++ ++  a+  e+++e++++ +++t+++ G+SG+GK+   + ++
   CCD26433.1 128 IDELYTQEMIQQYARKTREEMVPHIFAIAE--EAFREMSNKHENQTIIVSGESGAGKTVTAKYIM 190
                  555555555888888888888888887666..99***********************97666665 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.6
                  HHTT-EEEEEEE-GGG--HHHHHHHHHHHHHHTTSEEEE--TTTHT CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeeeeleelkeelealgyevllvsaktke 88 
                   +++++  iv+ +i++  ++++++ ++++++++ y+ l+ + k  +
   CCD26433.1 878 VQSQLKGYIVMRRIEIELQKKACTMIQKKVRSYKYQRLFKDYK--R 921
                  4567888999999999999999999999999999999988766..3 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.8e-05     0.027       5      38 ..     169     204 ..     164     260 .. 0.69
   2 ?   -1.0   0.5       1.3     2e+03      46     115 ..     973    1038 ..     930    1059 .. 0.57
   3 ?   -2.4   0.1       3.6   5.4e+03      49      98 ..    1240    1287 ..    1210    1315 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-05
      AAA_22   5 agilvvtGesGtGKTtllrrlleqldeeakaee..e 38 
                  + ++v GesG+GKT++++ +++ +  +++      
  CCD26433.1 169 NQTIIVSGESGAGKTVTAKYIMRFFASVEEDISasD 204
                 67799*****************99977765554554 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.3
      AAA_22   46 tlpsstsskdllrellralglelkaerlsseellealeqalraravielliiDEaqhlrseealeeLrsl 115 
                  ++++ ++ +d++r++ ++    lk+   s+   +++  q+l++ +  +  ++D  ++l ++ + +eL++l
  CCD26433.1  973 NIKENKKTTDICRQISKEDRTTLKS---STGIQYSKKLQQLKDDKLLVQNVLDKYEKL-KDFCRKELKDL 1038
                  4444444555555555554444444...444444444444444444355566777777.65555555444 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 3.6
      AAA_22   49 sstsskdllrellralglelkaerlsseellealeqalrarav.ielliiD 98  
                  + + s+  l+el r+++++ ++   s++e  +a+ ++l++ +  + l+  D
  CCD26433.1 1240 KNC-SRYTLHELKRQFNSSSSS--SSNKEENDAIKEQLDTIYIyTDLFGMD 1287
                  333.455567777777777777..666666666666666665555555555 PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.4e-05      0.05     116     161 ..     158     201 ..     123     221 .. 0.75

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.4e-05
       T2SSE 116 ekiaevlrkavrerglilvsGgTgsGKttllyallkeinksderiv 161
                 e+++e+ +k   e+++i+vsG  g GKt+++  ++ ++++ +e i 
  CCD26433.1 158 EAFREMSNKH--ENQTIIVSGESGAGKTVTAKYIMRFFASVEEDIS 201
                 4444544444..7899******************999999877664 PP

>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   0.1   1.4e-05     0.021      10      71 ..     168     230 ..     164     285 .. 0.74

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.4e-05
                 TTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET.TCEGGGB-HHHCCHCEEEE-SS--S- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  10 egekvaivGenGaGKStLlkllagllkpteGeilld.gkdlkeqeleslrkeigvlpqepqlf 71 
                 e++++ + Ge+GaGK+  +k +++     e++i    g++ ++ e++  +k+i       + f
  CCD26433.1 168 ENQTIIVSGESGAGKTVTAKYIMRFFASVEEDISASdGDEAHQLEMSDIEKKILATNPIMEAF 230
                 6789999*********************99999877577777766666666665544444444 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012      0.18       2      43 ..     172     213 ..     171     906 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00012
                 EEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEEEESSCCCC CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA   2 aiastkGGvGKTtlaanLaralarrglrVllvDaDpqannla 43 
                 +i+s+ +G+GKT++a  ++r +a  + ++ + D D    + +
  CCD26433.1 172 IIVSGESGAGKTVTAKYIMRFFASVEEDISASDGDEAHQLEM 213
                 79*********************9999999999887755544 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00011      0.17      15      51 ..     159     199 ..     147     312 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00011
      AAA_16  15 ale.rvrsgrpelvllsGesGvGKsslvrellr...alekd 51 
                 a++ + ++++ + +++sGesG GK+  ++ ++r   ++e+d
  CCD26433.1 159 AFReMSNKHENQTIIVSGESGAGKTVTAKYIMRffaSVEED 199
                 5553455566699**************97776533244444 PP

>> Sigma54_activat  Sigma-54 interaction domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.8e-05      0.13      20      45 ..     167     200 ..     151     238 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.8e-05
                      TSSS-EEEECSTTSSHHHHHHHHHH........H CS
  Sigma54_activat  20 ktdlsvlitGesGtGKellaraihe........a 45 
                      + + ++++ GesG+GK++ a+ i +         
       CCD26433.1 167 HENQTIIVSGESGAGKTVTAKYIMRffasveedI 200
                      445899****************988554444433 PP

>> DUF2281  Protein of unknown function (DUF2281)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00092       1.4       5      35 ..     951     981 ..     949     987 .. 0.86
   2 ?   -1.3   0.2       2.5   3.8e+03      22      48 ..    1055    1085 ..    1052    1098 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00092
     DUF2281   5 kiqeLPedlkqEvldFaefLleKyaakkkkt 35 
                 +++++ edl++Ev  F+e L+ + +++kk+t
  CCD26433.1 951 HLKTIAEDLQNEVIQFIEELVINIKENKKTT 981
                 579999***************9997777766 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 2.5
     DUF2281   22 efLleKyaakkkktlkl.rlaGilkgl...l 48  
                  + L++K+  kk + + + +  G++k++    
  CCD26433.1 1055 KLLHTKKEIKKLRGMDFsQSSGGAKKStndT 1085
                  5666666444444444478999999994432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1641  (0.0915277); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.01u 0.33s 00:00:01.34 Elapsed: 00:00:00.49
# Mc/sec: 9111.23
//
Query:       CCD26434.1  [L=231]
Description: hypothetical protein NDAI_0H02600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.4e-61  206.6  16.4    2.8e-61  206.4  16.4    1.0  1  vATP-synt_E      ATP synthase (E/31 kDa) subunit
  ------ inclusion threshold ------
      0.059   12.6   1.5      0.075   12.3   1.5    1.2  1  tRNA-synt_2e     Glycyl-tRNA synthetase alpha subunit
       0.13   11.6  10.4       0.11   11.9   9.0    1.4  1  Phlebovirus_NSM  Phlebovirus nonstructural protein NS-M
       0.13   13.0  10.2      0.063   14.0   3.4    2.6  3  DUF4162          Domain of unknown function (DUF4162)
       0.54   10.1   3.5       0.83    9.5   3.5    1.3  1  Folliculin       Vesicle coat protein involved in Golgi to pl


Domain annotation for each model (and alignments):
>> vATP-synt_E  ATP synthase (E/31 kDa) subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.4  16.4   7.7e-65   2.8e-61       1     199 []      24     221 ..      24     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: 206.4 bits;  conditional E-value: 7.7e-65
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHCCCCH CS
  vATP-synt_E   1 fIrqeAeekAeeIkakaeeefeiekaklveeeeekieeayekkeKqaelqkkiaiSnalnkarlkvLkareevleevfeeaekkLaeveedkdeYkel 98 
                  fIr+eAeekA+eI+ ka++e+eiek+ +v++e+ +i+ ++e k K+++l+++i+ S+++nk+rlkvL+aree l+++f+ a+++L e+++d+++Yk +
   CCD26434.1  24 FIRKEAEEKAKEIQLKADQEYEIEKTSIVRNETSNIDTNFEAKLKKLSLKQQITRSTIANKMRLKVLSAREESLNDIFDSAKEQLIELAKDETKYKPI 121
                  8************************************************************************************************* PP

                  HHHHHCCCCCCC-SSCEEEEECCCCHHCCCCTHCCCCCCHHCCSSSS--SEEEEESSEB.TTSSSEEEECCSSSCEEECCCHHHCHHHHHHHHHHCCC CS
  vATP-synt_E  99 lkkLivqalvkleepevivrarkeDaelveealdkaaeeykaktkkktvevagdeedfl.edvlGGvvleaadgkikvnnTlearLelvleqllpeir 195
                  lk Li +al++l e+++++r+ ++D ++v ++ld+++++yk+ tkk+ +e ++ + d+l e+++GG    + dgki+vnnTle+rL+l+++++lp+ir
   CCD26434.1 122 LKALILEALFRLLENKAVIRVTERDSKIVPSLLDDVKKQYKEVTKKD-IEISVSK-DYLnENIAGGLFATNGDGKIEVNNTLEERLDLLSQEALPAIR 217
                  ******************************************99999.**99999.788699************************************ PP

                  CCHC CS
  vATP-synt_E 196 kaLF 199
                   ++F
   CCD26434.1 218 LEMF 221
                  9998 PP

>> tRNA-synt_2e  Glycyl-tRNA synthetase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.5   2.1e-05     0.075     157     271 ..      44     159 ..      22     170 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.1e-05
                   EEHHHHHHHHCT-SSGGG-ECCTT....EEHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHTT- CS
  tRNA-synt_2e 157 yGleRlamylqevdnvydlewnek....vtygdvflqneveqsaynfeeadvelllklfeeyekeakrllekklvlpaydlvlkashtfnlldarga 249
                   y +e+ +++  +  + +d +++ k       +++ +++  ++ + ++ +a  e l ++f++++++  +l +++  +     +l    +f ll+ + +
    CCD26434.1  44 YEIEKTSIVR-NETSNIDTNFEAKlkklSLKQQITRSTIANKMRLKVLSAREESLNDIFDSAKEQLIELAKDETKYKPILKALILEALFRLLENKAV 139
                   5566654443.333344556655411113445666666677778888889999999******99999999888777666667777899********* PP

                   --HHHHHHHHHHHHHHHHHHHH CS
  tRNA-synt_2e 250 isvterakyiarvrklakkvae 271
                   i vter + i    +l   v +
    CCD26434.1 140 IRVTERDSKIV--PSLLDDVKK 159
                   ******99873..344444444 PP

>> Phlebovirus_NSM  Phlebovirus nonstructural protein NS-M
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   9.0     3e-05      0.11     146     258 ..      25     134 ..      19     140 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3e-05
  Phlebovirus_NSM 146 lkkkaeekdktisrktkesEediknqvlhseieqlknelqkkRndikrgqekrdakklveesmArvkdlkeelkiltdelsqikseiqilrkki 239
                      ++k+aeek k i++k+ +  e  k+ ++ +e + ++ + + k   +k+   k+++ + +   + r k l  +   l d ++ +k+++  l k  
       CCD26434.1  25 IRKEAEEKAKEIQLKADQEYEIEKTSIVRNETSNIDTNFEAK---LKKLSLKQQITRSTIANKMRLKVLSAREESLNDIFDSAKEQLIELAKDE 115
                      689***********999988889************9998866...445666666666666667788889999999******************* PP

  Phlebovirus_NSM 240 kdfetvvpAllsvAllsll 258
                       +++ +++Al+  Al+ ll
       CCD26434.1 116 TKYKPILKALILEALFRLL 134
                      ***********99998765 PP

>> DUF4162  Domain of unknown function (DUF4162)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   3.4   1.8e-05     0.063       6      77 ..      25     101 ..      23     104 .. 0.76
   2 ?    2.1   0.5     0.089   3.2e+02       3      14 ..     154     165 ..     102     200 .. 0.71
   3 ?    2.6   0.3     0.064   2.3e+02       3      25 ..     154     179 ..     153     224 .. 0.56

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                 HHTTS-SSEEEEE-------..---EEE..E-TT..S-EEEEE-------------.----EEEEEEEE---HHHHH CS
     DUF4162   6 iKrsygknrieveadaeelleepgveev..eeeg..gelelkledeeaanellkal.tsgveirsFeeeePsLndIF 77 
                 i+++  ++  e++ +a++  e+++ ++v  e+ +  +++e kl++ + ++++ +   +++++++ ++ +e sLndIF
  CCD26434.1  25 IRKEAEEKAKEIQLKADQEYEIEKTSIVrnETSNidTNFEAKLKKLSLKQQITRSTiANKMRLKVLSAREESLNDIF 101
                 77888777777775555555555555553222335578*******8899999998879******************* PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.089
                 HHHHHTTS-SSE CS
     DUF4162   3 leeiKrsygknr 14 
                 l+++K++y++ +
  CCD26434.1 154 LDDVKKQYKEVT 165
                 456666665443 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.064
                 HHHHHTTS-SSEEE.EE...------- CS
     DUF4162   3 leeiKrsygknrie.ve...adaeell 25 
                 l+++K++y++ + + +e   + ++ l+
  CCD26434.1 154 LDDVKKQYKEVTKKdIEisvS-KDYLN 179
                 789999998766555555442.33222 PP

>> Folliculin  Vesicle coat protein involved in Golgi to plasma membrane transport
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   3.5   0.00023      0.83      79     164 ..      16     100 ..       4     121 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00023
  Folliculin  79 rlllkawsfiveafeklaaeiqalaeaelereskeeeassaassssalkadgsglsrregssfslskekylrrsksklkarsLael 164
                   l k   fi +  e+ a+eiq +a++e+e e+++  ++++++  ++++a+ ++ls +++ + s + ++ +r +  + ++ sL ++
  CCD26434.1  16 DELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTSIVRNETSNIDTNFEAKLKKLSLKQQITRS-TIANKMRLKVLSAREESLNDI 100
                 567788899********************99999777666666666655555555544333222.333333333344444455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1858  (0.103631); expected 358.6 (0.02)
Passed bias filter:                      501  (0.0279436); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1795.50
//
Query:       CCD26435.1  [L=802]
Description: hypothetical protein NDAI_0H02610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1424  (0.0794244); expected 358.6 (0.02)
Passed bias filter:                      370  (0.020637); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.28s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 5625.77
//
Query:       CCD26436.1  [L=214]
Description: hypothetical protein NDAI_0H02620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-35  120.8   0.8    6.3e-35  120.8   0.8    1.4  2  EMP24_GP25L  emp24/gp25L/p24 family/GOLD
     0.0023   17.7   0.4     0.0031   17.2   0.4    1.2  1  Imm64        Immunity protein 64


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4      0.67     6e+03     162     175 ..       6      19 ..       4      21 .. 0.84
   2 !  120.8   0.8     7e-39   6.3e-35       6     182 .]      38     207 ..      34     207 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.67
  EMP24_GP25L 162 qllvlvlvavlqvy 175
                  ql+ ++ va++q+ 
   CCD26436.1   6 QLISVLMVALWQFS 19 
                  7899999*****86 PP

  == domain 2  score: 120.8 bits;  conditional E-value: 7e-39
  EMP24_GP25L   6 lpageekCfyeelkk.gtlltgsyqvtdggaaldvdlsvkdpdgngerlvkkkdresegdfsftakesgeykvCfdnsfstksskkvsfdievgseas 102
                  l++  ++C+y++l k +++l++syqv  gg ++++d++++ pdg    lv++k+++ + df  ++ + g+y++Cf+ns  t   kkv++ +e+++   
   CCD26436.1  38 LSPFTTECLYYDLLKdDDTLVVSYQVLTGG-NFEIDFEITAPDG--SKLVEEKQKKYS-DFLLKSFGLGQYSFCFTNSYGTNV-KKVEVTLEMEK--- 127
                  678889*******998**************.9********6666..******999877.******************988754.77777777743... PP

  EMP24_GP25L 103 dykdsakkekletleselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyLkrfFk 182
                  ++++s+ +++     + ++++e++l++i ++++ylr+re r++ t++st+sr++w s+l ++v v++ +l  ++++ fF+
   CCD26436.1 128 KIDSSDINNEDMIAYNAVEEIERNLNKITKTMNYLRAREWRNMSTVNSTESRLIWLSLLVIGVTVGINILEAFIIQFFFN 207
                  2333444444345789**************************************************************95 PP

>> Imm64  Immunity protein 64
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.4   3.4e-07    0.0031      63     135 ..      94     162 ..      59     178 .. 0.83

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 3.4e-07
       Imm64  63 diykslsrgfygevevkadilkrkdvevimriekekeflgllldikeeeLleekskeeiesiteelievfeei 135
                  + ks+  g y+    ++   ++k+vev++ +ek+ +      di++e+++  +++eeie+  ++++++++ +
  CCD26436.1  94 FLLKSFGLGQYSFCFTNSYGTNVKKVEVTLEMEKKIDS----SDINNEDMIAYNAVEEIERNLNKITKTMNYL 162
                 4467777777777766666778999******9999986....6***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       863  (0.0481343); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.22s 00:00:00.61 Elapsed: 00:00:00.34
# Mc/sec: 1866.00
//
Query:       CCD26437.1  [L=194]
Description: hypothetical protein NDAI_0H02630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0021   18.4   1.3     0.0021   18.4   1.3    1.8  2  FUN14     FUN14 family


Domain annotation for each model (and alignments):
>> FUN14  FUN14 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.24   4.3e+03       3      20 ..      52      69 ..      48      74 .. 0.65
   2 !   18.4   1.3   1.2e-07    0.0021       2      89 ..     108     189 ..     107     191 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.24
                xxxxxxxxxxxxxxxxxx RF
       FUN14  3 iGaviGlvtGfalkkvgK 20
                +G ++G+ + + +k + K
  CCD26437.1 52 TGILTGISSLYYIKNIKK 69
                566666666666676666 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 1.2e-07
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       FUN14   2 giGaviGlvtGfalkkvgKlaaiavGggllllqilasqgyikvnwdkiekdveelldrnkdgklgtedeklltenlpfsagFlaGfll 89 
                 ++G+++G+v+G+++ k++ +++ +  ++l+ ++ l +  ++ +n + ++k+   +l + ++++l+        +n+ f+++Fl+ fll
  CCD26437.1 108 CLGSIFGIVAGVIVSKLSSILIAMGLLSLVSVRWLMRGNVLVINRQVLSKEGLMKLFNIDSKTLN------SANNVYFKGSFLTCFLL 189
                 78*****************999999999*******************996655322222222222......23589999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       753  (0.041999); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.22s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 1464.71
//
Query:       CCD26438.1  [L=195]
Description: hypothetical protein NDAI_0H02640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
      0.029   13.9   0.0      0.044   13.3   0.0    1.3  1  Peptidase_A2B  Ty3 transposon peptidase
       0.16   11.3   0.0       0.29   10.4   0.0    1.5  2  MCR_alpha_N    Methyl-coenzyme M reductase alpha subunit, N-t


Domain annotation for each model (and alignments):
>> Peptidase_A2B  Ty3 transposon peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   4.9e-06     0.044     108     136 ..       2      30 ..       1      42 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 4.9e-06
  Peptidase_A2B 108 aayvldkmdyqllignpilrrypkllytv 136
                     ayv dk+  +l++gnpil  +p ll + 
     CCD26438.1   2 VAYVNDKIPDKLIMGNPILELHPELLVSP 30 
                    69**********************99764 PP

>> MCR_alpha_N  Methyl-coenzyme M reductase alpha subunit, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.2e-05      0.29     137     189 ..       4      63 ..       1      89 [. 0.80
   2 ?   -2.5   0.0      0.29   2.6e+03     184     207 ..     109     132 ..      96     137 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 3.2e-05
                  HHHHHTTT--SS-TT-----TTT-T......T-.EEEEEES-HHHHTTS-GGGB--HHHH CS
  MCR_alpha_N 137 vlnhalPGgavvqehmvethPalve......dc.yvkvftGddeladeidkqflidinke 189
                   +n  +P   ++ + + e hP l        +c +++  tG+d+   e+++ f+idi+k 
   CCD26438.1   4 YVNDKIPDKLIMGNPILELHPELLVspvrniECdFIREGTGEDNYGKEVEDIFIIDIEKP 63 
                  688899999999999999999985312222234478889*******************95 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.29
                  --HHHHS-HHHHHHHHHHH-S-EE CS
  MCR_alpha_N 184 idinkefpeeqaeqlkkaiGkkly 207
                  i+  k+ p +qa +l  ++Gk + 
   CCD26438.1 109 IKDGKRPPRQQAYRLSPKLGKVTS 132
                  444678899999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       434  (0.0242066); expected 358.6 (0.02)
Passed bias filter:                      389  (0.0216967); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1520.03
//
Query:       CCD26439.1  [L=363]
Description: hypothetical protein NDAI_0H02650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-71  240.7   4.8    1.8e-71  240.1   4.8    1.3  1  Spo7      Spo7-like protein
     0.0012   18.5   0.4     0.0019   17.8   0.4    1.3  1  DUF2208   Predicted membrane protein (DUF2208)
  ------ inclusion threshold ------
       0.17   11.6   0.0       0.44   10.3   0.0    1.6  1  DUF4538   Domain of unknown function (DUF4538)


Domain annotation for each model (and alignments):
>> Spo7  Spo7-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.1   4.8     3e-75   1.8e-71       1     220 [.     133     347 ..     133     348 .. 0.96

  Alignments for each domain:
  == domain 1  score: 240.1 bits;  conditional E-value: 3e-75
        Spo7   1 sspskiyrnLLiLEesLraqalelrarrrkytlflllLalviafflyalflapr..edgsgvggsvywvvevvekvlliggvvTlvLfwlsGeyertiv 97 
                 ss+ski+rnLLiLE++Lr+qa   +++++++t+f++ L++v++f++y+lf+     + +s++ +s   +++++++++++++++TlvLf+lsG+y+rtiv
  CCD26439.1 133 SSASKIFRNLLILEDDLRRQAGIAKRLKWQFTMFFSGLIGVAGFAIYELFFDYGsfNGHSNTDKSMSRLYRIFLQFTVCFIAITLVLFHLSGQYKRTIV 231
                 89*************************************************54311346777788899******************************* PP

        Spo7  98 iprrflsvtNrgLRqfNvklvkvkrslleelldl............lavllkvgllsesekssvflvevkirsqpriasalrekekearlaedlapgad 184
                 iprrf+ ++N+gLRqfNvklvkv++s++e+++d+            l ++++++ +se++++ +f+++v+irsqpri                   ga 
  CCD26439.1 232 IPRRFFVSSNKGLRQFNVKLVKVNSSMDEKYTDFvryisrkvahcnLFLFRTILRFSEQSTIVHFWKSVTIRSQPRI-------------------GAI 311
                 *********************************************999999******999*****************...................*** PP

        Spo7 185 dvkllLlpkafspefRegweiYRaefwerenerrrk 220
                 dvkl+++p+ +s+e+RegweiYR+efw+re++rrr+
  CCD26439.1 312 DVKLIINPRFCSAEVREGWEIYRDEFWAREGARRRQ 347
                 ***********************************8 PP

>> DUF2208  Predicted membrane protein (DUF2208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.4   3.2e-07    0.0019      47     183 ..     122     253 ..     113     275 .. 0.65

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.2e-07
     DUF2208  47 llrerkkleevesgktLfeEknalkliekDeelqkelkeqlkasmitllllliviilffl...lyryiiplassllgevleeklarflaflalFealfl 142
                   r+ k+ ++++s++ +f+    l ++e D   q+ + + lk  ++++++ li+ + f +   +++y +   +s++++  ++    fl+f + F a++l
  CCD26439.1 122 SSRNPKSSSDISSASKIFR---NLLILEDDLRRQAGIAKRLKWQFTMFFSGLIGVAGFAIyelFFDYGSFNGHSNTDKSMSRLYRIFLQFTVCFIAITL 217
                 3467888899999999994...46688889899999999999999999998887776666111455555555555555555555555555555555555 PP

     DUF2208 143 ismflrllarrvlkklvmlimatsykvt.ekGivlkkrtgik 183
                 + + l    + ++k+++++  ++ + v  +kG+   + + +k
  CCD26439.1 218 VLFHL----SGQYKRTIVI--PRRFFVSsNKGLRQFNVKLVK 253
                 55555....5666666654..446777526787655555555 PP

>> DUF4538  Domain of unknown function (DUF4538)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   7.3e-05      0.44       4      26 ..     161     183 ..     159     184 .. 0.92

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 7.3e-05
     DUF4538   4 lkyvllvggvvgliglalYPiii 26 
                 ++++++++g++g+ g a+Y +++
  CCD26439.1 161 WQFTMFFSGLIGVAGFAIYELFF 183
                 8999***************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      458  (0.0255452); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.23s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2794.43
//
Query:       CCD26440.1  [L=495]
Description: hypothetical protein NDAI_0H02660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.3e-136  455.3  27.1   2.8e-136  455.1  27.1    1.0  1  MDM10     Mitochondrial distribution and morphology protein 1
  ------ inclusion threshold ------
        2.6    8.0   6.9        2.3    8.2   0.5    3.1  3  DUF999    Protein of unknown function (DUF999)


Domain annotation for each model (and alignments):
>> MDM10  Mitochondrial distribution and morphology protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  455.1  27.1  3.1e-140  2.8e-136       1     465 []       1     495 []       1     495 [] 0.91

  Alignments for each domain:
  == domain 1  score: 455.1 bits;  conditional E-value: 3.1e-140
       MDM10   1 MlefmdYvqkaFeeatnWn.rdnsYsnltatsdalldfsiPeglklqlsslstpnfatsytLstv......gvidGslsYLyssvp.Lenlvsqsesip 91 
                 Ml++m+Yv ++F++atnWn + nsY+ +t+t+++l+df+iP+++++qls++s++ ++++++++t+      ++++G l+YLy++++ L++++ +s++i+
  CCD26440.1   1 MLNYMEYVARSFQNATNWNpSSNSYEYITETARSLIDFQIPDSFRFQLSNNSSNVSYNTLEVTTKqnnlqnKKVHGFLTYLYTNMEnLHEIILSSSKIN 99 
                 9*****************8357*****************************************9988888899************************** PP

       MDM10  92 LqdlvrgYrqieplla.aelkekeakeeakekkkkksLlygrlylPssaLeAlvikrlspttqlqlkavssqklenggtllallqkdt..gkysqellv 187
                 Lqd++++Y++i+p +  +++ ++  ++  +++k++ sL+ygr+y+Pss LeA++ikrl+++ q++lk++ss+ + n +++++++q+++  ++++qe+++
  CCD26440.1 100 LQDATQTYKHIHPSYYkRRRGHNYFDNGIEKSKDNLSLYYGRMYYPSSDLEAMIIKRLNRNNQMTLKWLSSS-AYNFNIMTLYWQNKSrqNRNFQEFIF 197
                 *************98724455667788889999999************************************.56**********987447899***** PP

       MDM10 188 stdeaLlGlrglynfGgdaekkkasekasklnsslannsiysllSaGaElyygtlskspglStglRfaTlsastgkPltlTltlnPllGsisstYsvka 286
                 st++ L+G+r+l+n           +++sk+n+sl+nn   s+lS+GaEl++++ s++pg+St+lR++T+sa+tg+PltlT+++nPl+G+iss+Ys+k+
  CCD26440.1 198 STNDYLCGYRILHNS---------LSTSSKFNNSLYNN---STLSIGAELWLSLKSMNPGCSTSLRYCTHSANTGRPLTLTVSYNPLFGHISSSYSAKT 284
                 **************9.........78899*********...********************************************************** PP

       MDM10 287 senstlssrydFNvYSyeSnlslGmeLwrksrkkksseeeeeeeekekeeesvkskkeakkkkkekekeeeks.......................... 359
                 s +st+++rydFN+YS+eSnls+G+e+w + ++k+s  + ++ ++++   +++  ++ + +  ++ +++  +                           
  CCD26440.1 285 SLSSTFCTRYDFNIYSIESNLSFGWEFWGTGKQKESLLPPNTINNTSIVPNMAILNNVNGTIPNNISDDGIILdehfsegtrksqilptmelspttses 383
                 *****************************************999999999988888888777777766666558999*************997777777 PP

       MDM10 360 ..........tfssslekadkeksveesfqakleWrldkeekeeekkkekkeeeefssVlKarld.qdlnvkllWeGrvkslLvsaGvelslkklekss 447
                           tfssslek+dke + +++fq+k+e                   ++f+sV+K++++ +d+n+k  WeG+++++Lvs+G+el  ++ e ++
  CCD26440.1 384 qqkllqdltyTFSSSLEKIDKEMTLIDKFQNKFE------------------MTNFTSVWKFSTSlRDKNLKAKWEGKFRGFLVSIGTELFTTTPEPKT 464
                 7777777766666777777777777777777776..................99************************************988877666 PP

       MDM10 448 ..............elklksfrklGleiqYss 465
                                l+l +++k+G+eiqYss
  CCD26440.1 465 nsskpafkhennnsVLPL-HPAKFGIEIQYSS 495
                 899*******99855555.599*********8 PP

>> DUF999  Protein of unknown function (DUF999)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.5   0.00026       2.3      34      84 ..      53     103 ..      41     111 .. 0.85
   2 ?    2.1   0.1      0.02   1.8e+02      59      83 ..     209     233 ..     185     241 .. 0.84
   3 ?   -1.8   0.1      0.32   2.9e+03     101     114 ..     412     425 ..     381     442 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.00026
      DUF999  34 qslftniikpqkdklniktnkikeflndlftefskfhnsyypdgristrsk 84 
                  ++  n++     + n++ +k++ fl  l+t++ ++h+ +    +i  ++ 
  CCD26440.1  53 SNVSYNTLEVTTKQNNLQNKKVHGFLTYLYTNMENLHEIILSSSKINLQDA 103
                 456678888888999*************************99999998876 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.02
      DUF999  59 lndlftefskfhnsyypdgristrs 83 
                 l++ ++  skf ns y +  +s   
  CCD26440.1 209 LHNSLSTSSKFNNSLYNNSTLSIGA 233
                 66777788**********9998765 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.32
      DUF999 101 idkkfevkeflsiw 114
                  ++kfe+ +f s+w
  CCD26440.1 412 FQNKFEMTNFTSVW 425
                 34567777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       894  (0.0498633); expected 358.6 (0.02)
Passed bias filter:                      352  (0.019633); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 3498.48
//
Query:       CCD26441.1  [L=934]
Description: hypothetical protein NDAI_0H02670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2526  (0.140889); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.96u 0.35s 00:00:01.31 Elapsed: 00:00:00.52
# Mc/sec: 5444.00
//
Query:       CCD26442.1  [L=551]
Description: hypothetical protein NDAI_0H02680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-22   78.6   0.9    7.8e-22   77.4   0.9    1.7  1  GCR1_C    Transcriptional activator of glycolytic enzymes
  ------ inclusion threshold ------
       0.64   10.4   7.5      0.081   13.3   2.4    2.2  2  DUF4061   Domain of unknown function (DUF4061)


Domain annotation for each model (and alignments):
>> GCR1_C  Transcriptional activator of glycolytic enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.9   8.8e-26   7.8e-22       1      80 []     315     401 ..     315     401 .. 0.96

  Alignments for each domain:
  == domain 1  score: 77.4 bits;  conditional E-value: 8.8e-26
      GCR1_C   1 fklsreiktVedlwnEykeglngkpsikslekkygkrWrkdskesklfsrRkkiidfierlieeeg.......itreeavkileelR 80 
                 +k++r++++V dl++Ey+eg++gkpsi +le+++g++Wrk++ e+ lf++R +ii++ie + + ++       i+r++a+k++e++R
  CCD26442.1 315 YKMNRAVQNVIDLAREYYEGFPGKPSILNLERRFGTSWRKGRSERVLFTKRYCIIKKIEMVKKFPEryglpsnIKRNQAIKVIENIR 401
                 9*************************************************************77667778888************99 PP

>> DUF4061  Domain of unknown function (DUF4061)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   2.4     9e-06     0.081      24      85 ..     104     164 ..      98     167 .. 0.88
   2 ?   -2.4   0.2       0.7   6.3e+03      55      73 ..     197     215 ..     187     225 .. 0.54

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 9e-06
     DUF4061  24 afGkdcsleqleeiReqQekLarlhfeldaeeeelaekeedalresdenlkkLvskLeqLsk 85 
                 af ++++++ql++i eq ++L  + f +++e+e++  ++ ++l++  +n++k v+++  L k
  CCD26442.1 104 AF-QSFIVDQLTKIQEQNANLQAKMFLMEKEQEQFYLHQVKKLETGFKNVNKCVDDISILKK 164
                 55.56899****************************99******999**9999998877766 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.7
     DUF4061  55 eeelaekeedalresdenl 73 
                 +e+ ++++e a+++++e l
  CCD26442.1 197 QEQINKERERARNQEHERL 215
                 3334444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1665  (0.0928663); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.31s 00:00:00.96 Elapsed: 00:00:00.47
# Mc/sec: 3542.83
//
Query:       CCD26443.1  [L=399]
Description: hypothetical protein NDAI_0H02690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.6e-63  214.2   0.1    2.2e-63  213.8   0.1    1.2  1  SRAP      SOS response associated peptidase (SRAP)


Domain annotation for each model (and alignments):
>> SRAP  SOS response associated peptidase (SRAP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.8   0.1   1.2e-67   2.2e-63       1     219 []       1     261 [.       1     261 [. 0.81

  Alignments for each domain:
  == domain 1  score: 213.8 bits;  conditional E-value: 1.2e-67
        SRAP   1 MCgRyaltlapeelae...............eleaeeedke....................lrpsynvaptqkvpvvvaeeeeeeeeeeerklqamkwG 64 
                 MCgR+al ++ +e+a+               e                             l +synvapt+ v v++  +++        +l++mkwG
  CCD26443.1   1 MCGRFALEITGREVADqivndfyldiieseeE--------VetgavpeegeedireergngLGKSYNVAPTSFVNVYT--NSH--------HLRTMKWG 81 
                 **********9999995555555555444441........1344455555556677777889***************9..333........69****** PP

        SRAP  65 lvPswakdp...kklglktiNaRsetlaekplfrsalkkkRcvvpadGFYEWkkkgkekqPyfikrkdgkllalAGLydvwe............eeg.. 146
                 l+P+w  ++   +  + +tiNaR etl++k++++ +lk kRcv+p++G+YEW+kk+ ek+Py++krkd+kl++lAGLyd+ +            e g  
  CCD26443.1  82 LIPQWIARSkmdSYNSGRTINARLETLSSKRIWKGCLKYKRCVIPVSGYYEWQKKKGEKIPYYVKRKDNKLIFLAGLYDHLNqeqtngskgeksE-Gkv 179
                 ******55412133359************************************999***********************9986777776666540.155 PP

        SRAP 147 ....eeeklytytiiTteankqlaelHdRmPviLee..eelraWLdp.rkedske.lqellkpa.eeeelevypVskeVnkv 219
                     +e++ly++ti+T  a ++l++lHdRmP +Le+  +e+++WL++ ++e++++ l + lkp+ +e+ +e y+Vsk+V++v
  CCD26443.1 180 eikeREQTLYSFTIVTGVAPDSLKWLHDRMPTVLEPgsKEWNEWLNEdKTEWTQKeLYDTLKPTyNESLMESYQVSKDVGSV 261
                 55556789**************************9999*********98888766488889887356789*********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1231  (0.0686597); expected 358.6 (0.02)
Passed bias filter:                      436  (0.0243181); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.44
# Mc/sec: 2732.42
//
Query:       CCD26444.1  [L=457]
Description: hypothetical protein NDAI_0H02700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      0.001   19.3   3.1      0.069   13.4   0.1    3.7  4  TPR_12    Tetratricopeptide repeat
      0.006   15.8   0.1     0.0086   15.3   0.1    1.2  1  DUF3498   Domain of unknown function (DUF3498)
      0.007   15.8   6.4       0.37   10.2   1.0    2.2  2  SNAP      Soluble NSF attachment protein, SNAP
  ------ inclusion threshold ------
        0.1   12.7   2.7        9.6    6.4   0.0    4.0  4  MIT       MIT (microtubule interacting and transport) domain
        0.4   10.6   4.7         20    5.1   0.1    3.2  2  DUF1759   Protein of unknown function (DUF1759)


Domain annotation for each model (and alignments):
>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.9e-05     0.069      18      70 ..      63     115 ..      60     117 .. 0.96
   2 ?   -1.5   0.0      0.86   3.1e+03      24      47 ..     144     167 ..     143     173 .. 0.65
   3 ?    0.6   0.0      0.19     7e+02      47      70 ..     295     319 ..     268     323 .. 0.81
   4 ?    2.3   0.0     0.058   2.1e+02       8      35 ..     400     427 ..     392     436 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.9e-05
      TPR_12  18 rydeAlellekaleiarrllGpdhpltattlrnLgrlyralgryeeAlellee 70 
                 +y+ Al ++  al + +r  +p ++ + ++   ++++++ lg yeeA++++ e
  CCD26444.1  63 NYESALYNYINALKALQRKKDPLSEPYTRIELKIAQMFENLGMYEEAHSIYLE 115
                 8************************************************9965 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 0.86
      TPR_12  24 ellekaleiarrl.lGpdhpltatt 47 
                 ++l k+lei + + lG+++ l+a  
  CCD26444.1 144 RILIKSLEINKDVeLGKKN-LLAHL 167
                 6788999999777455554.55544 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.19
      TPR_12  47 tlrnLgrl.yralgryeeAlellee 70 
                 ++ n g l y+++++ye+ +e l+e
  CCD26444.1 295 SQANVGSLlYLQAEKYEAEIEKLKE 319
                 6678888845688999999988877 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.058
      TPR_12   8 nlaavlrrlgrydeAlellekaleiarr 35 
                   +++ ++ g + +A++ll+ ++ +a++
  CCD26444.1 400 GKGVLNLHDGVLSKAEKLLKDSITLAKE 427
                 5666667777777777777777777655 PP

>> DUF3498  Domain of unknown function (DUF3498)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   2.4e-06    0.0086     397     422 ..     304     329 ..     270     347 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 2.4e-06
                 XXXXXHHHHHHHHHHHHHHHHHHHHH CS
     DUF3498 397 lkqkekYeeeiskLkerLrvSsrkLe 422
                 + q+ekYe+ei kLkerL++ + k+ 
  CCD26444.1 304 YLQAEKYEAEIEKLKERLHLNNEKIT 329
                 5689****************999975 PP

>> SNAP  Soluble NSF attachment protein, SNAP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.4   0.00039       1.4     129     180 ..      62     115 ..      50     125 .. 0.86
   2 !   10.2   1.0    0.0001      0.37     120     198 ..     306     385 ..     296     394 .. 0.93

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00039
                 --HHHHHHHHHHHHHHHHHTT..-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH CS
        SNAP 129 gdlekAieaYekAaelyeqee..akalankcllkvAelsaelekyekAieiyek 180
                  ++e+A+ +Y +A +  +  +   +   + + lk+A++  +l+ ye+A  iy +
  CCD26444.1  62 FNYESALYNYINALKALQRKKdpLSEPYTRIELKIAQMFENLGMYEEAHSIYLE 115
                 5799***********99876644788899***********************76 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0001
                 HHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT.-HHHHHHHHHHHHHTTSS-TTTGGGHHHH CS
        SNAP 120 iaelyekelgdlekAieaYekAaelyeqeeakalankcllkvAelsaele.kyekAieiyekvakkslennllkysvkey 198
                  ae ye e+++l++ ++  ++   +  +e +k++  ++  k+ +l+ +++  ++ A e y+++++ s +n+ lky +k+ 
  CCD26444.1 306 QAEKYEAEIEKLKERLHLNNEKITTLGEEFKKMSDDNIITKLRSLNKNKDtCLKMANECYDNIIEFSKKNRNLKYHMKDQ 385
                 5999*****************************************8888768999***********************95 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0027       9.6      19      35 ..      63      79 ..      49      88 .. 0.90
   2 ?    3.3   0.0     0.024        85       9      31 ..      95     117 ..      92     144 .. 0.75
   3 ?   -2.3   0.3       1.4     5e+03      52      65 .]     306     319 ..     300     321 .. 0.71
   4 ?   -1.3   0.0      0.64   2.3e+03      23      48 ..     395     417 ..     386     427 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0027
         MIT 19 nyeeAlelYkealelLl 35
                nye Al +Y +al+ L+
  CCD26444.1 63 NYESALYNYINALKALQ 79
                9************9987 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.024
         MIT   9 kkAveeDnagnyeeAlelYkeal 31 
                 k A   +n g yeeA + Y e l
  CCD26444.1  95 KIAQMFENLGMYEEAHSIYLEML 117
                 6688899***********97755 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 1.4
         MIT  52 kieeYleRaeeLke 65 
                 ++e+Y + +e+Lke
  CCD26444.1 306 QAEKYEAEIEKLKE 319
                 66777777888875 PP

  == domain 4  score: -1.3 bits;  conditional E-value: 0.64
         MIT  23 AlelYkealelLlqalkekneerrel 48 
                 Al+ Y +++  L+ ++     +  +l
  CCD26444.1 395 ALSTYGKGVLNLHDGVLS---KAEKL 417
                 888888988888888862...33334 PP

>> DUF1759  Protein of unknown function (DUF1759)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0056        20      44     117 ..     162     235 ..     159     252 .. 0.92
   2 ?    4.7   1.4    0.0072        26      47      87 ..     301     341 ..     295     396 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0056
     DUF1759  44 nvvahlalseenYeaaveaLkkrYdnkrkiirellnelmklpslkeedasqlrrivdavneivralealgeead 117
                 n++ahl l++e   +    Lkk +d  ++++ + l++  +l+    +d  +l+ +   vn    +l+  g++  
  CCD26444.1 162 NLLAHLLLAQEEVMSRSPELKKFFDDRKEMVGSDLKSNANLNLNALKDILNLKYFKTVVNDENIKLDDNGHMIL 235
                 7899******9999999*************************999***************99999999998865 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.0072
     DUF1759  47 ahlalseenYeaaveaLkkrYdnkrkiirellnelmklpsl 87 
                 + l l +e Yea +e Lk+r   +++ i+ l +e+ k+ + 
  CCD26444.1 301 SLLYLQAEKYEAEIEKLKERLHLNNEKITTLGEEFKKMSDD 341
                 55778999************998888888888888888762 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1069  (0.0596241); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3349.05
//
Query:       CCD26445.1  [L=318]
Description: hypothetical protein NDAI_0H02710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.3e-44  147.1  10.8    2.4e-07   31.3   0.4    7.2  7  WD40           WD domain, G-beta repeat
    8.4e-10   38.8   1.2      0.033   14.5   0.0    4.8  5  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    4.8e-06   25.5   5.2     0.0096   14.6   0.1    4.5  5  Nup160         Nucleoporin Nup120/160
    7.5e-06   25.1   0.4       0.42    9.5   0.0    4.0  4  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
    0.00013   21.9   0.5      0.019   14.9   0.1    3.0  3  eIF2A          Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
      0.045   13.7   0.0         17    5.5   0.0    3.2  3  PD40           WD40-like Beta Propeller Repeat
      0.099   12.6   0.0       0.58   10.2   0.0    2.2  2  KOW            KOW motif
       0.11   11.3   0.7        2.6    6.7   0.2    2.9  3  Nucleoporin_N  Nup133 N terminal like


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   1.4e-06    0.0032       5      37 ..      11      45 ..       8      46 .. 0.83
   2 !   31.3   0.4   1.1e-10   2.4e-07       2      38 .]      56      93 ..      55      93 .. 0.93
   3 !   26.5   0.0   3.5e-09   7.8e-06       5      37 ..     101     134 ..      97     135 .. 0.90
   4 !   15.9   0.1   7.9e-06     0.018       1      38 []     138     181 ..     138     181 .. 0.74
   5 !   28.6   0.0   7.6e-10   1.7e-06       6      38 .]     190     223 ..     185     223 .. 0.89
   6 !   10.4   0.0   0.00043      0.96       4      29 ..     230     255 ..     227     265 .. 0.83
   7 !   16.6   0.0   4.7e-06      0.01      13      37 ..     289     312 ..     278     313 .. 0.89

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 1.4e-06
                EEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEE CS
        WD40  5 rtltGH.ssvtslafspdgawla.sGsdDgtvriW 37
                +tl+GH ++vtsla+s  ++ l+ s+s+D+t+  W
  CCD26445.1 11 GTLEGHnGWVTSLATSAGQPNLLlSASRDKTLISW 45
                689***666*****88888886449*******999 PP

  == domain 2  score: 31.3 bits;  conditional E-value: 1.1e-10
                EEEEEEESSSS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  2 qclrtltGHss.vtslafspdgawlasGsdDgtvriWd 38
                 ++r+++GHs+ v ++   +dga+ +s+s+D+t+r+Wd
  CCD26445.1 56 VPVRSFKGHSHiVQDCTLTQDGAYALSASWDKTLRLWD 93
                689******8867***********99***********9 PP

  == domain 3  score: 26.5 bits;  conditional E-value: 3.5e-09
                 EEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   5 rtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 + + GH s+v s+a ++  ++++sGs+D+t+++W
  CCD26445.1 101 QRFVGHkSDVMSVAIDRKASMIISGSRDKTIKVW 134
                 4578**888************************* PP

  == domain 4  score: 15.9 bits;  conditional E-value: 7.9e-06
                 TEEEEEEESS.SSEEEEE...EETTSSE..EEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtsla...fspdgaw..lasGsdDgtvriWd 38 
                 gqcl tl GH ++v+ ++   ++++ +   ++s++ D+ v+ W+
  CCD26445.1 138 GQCLATLLGHnDWVSQVRiapTDQNDDTvtVISAGNDKMVKAWN 181
                 79********55598888667444444444677888*******8 PP

  == domain 5  score: 28.6 bits;  conditional E-value: 7.6e-10
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  + GH ++v+++  spdg+++as+++Dg +++W+
  CCD26445.1 190 DFVGHnGNVNAVTASPDGSLIASAGKDGEIMLWN 223
                 588**555*************************8 PP

  == domain 6  score: 10.4 bits;  conditional E-value: 0.00043
                 EEEEESSSSEEEEEEETTSSEEEEEE CS
        WD40   4 lrtltGHssvtslafspdgawlasGs 29 
                 ++tl++++ v +lafsp+  wla+++
  CCD26445.1 230 MYTLSAQDEVFALAFSPNRYWLAAAT 255
                 578889977*************9764 PP

  == domain 7  score: 16.6 bits;  conditional E-value: 4.7e-06
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                 v sl +s dg+ l++G  D+ +r+W
  CCD26445.1 289 V-SLTWSADGQTLFAGYTDNVIRVW 312
                 5.899***********88******* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.029        65      40      86 ..      67     112 ..      29     149 .. 0.83
   2 ?    3.0   0.2     0.056   1.3e+02      23      80 ..     127     184 ..     107     191 .. 0.70
   3 !   13.3   0.0   3.5e-05     0.078      37      89 ..     194     244 ..     185     247 .. 0.88
   4 !   11.3   0.0   0.00014      0.32       4      66 ..     204     263 ..     201     278 .. 0.68
   5 !   14.5   0.0   1.5e-05     0.033       8      69 ..     249     316 ..     242     318 .] 0.70

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.029
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                   v++    +dg     a  d ++rl d+ +g++ + +  ++++ v++
   CCD26445.1  67 IVQDCTLTQDGAYALSASWDKTLRLWDVATGETYQRFVGHKSD-VMS 112
                  5666667788888888999999999999999999998666654.554 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.056
  ANAPC4_WD40  23 RlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvks 80 
                  R +  +vwt++ +       +  W  + ++     +d +v +++a + k+v++++ ++
   CCD26445.1 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRIAPTDQNDDTVTVISAGNDKMVKAWNLNQ 184
                  5555667777544445555555666666766677788899999999999999888765 PP

  == domain 3  score: 13.3 bits;  conditional E-value: 3.5e-05
  ANAPC4_WD40  37 edsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  ++++v+++  +pdg+l+a a +dge+ l +  +++ + +ls+++e  v  l +
   CCD26445.1 194 HNGNVNAVTASPDGSLIASAGKDGEIMLWNLLEKTAMYTLSAQDE--VFALAF 244
                  67899999****************************999999987..777766 PP

  == domain 4  score: 11.3 bits;  conditional E-value: 0.00014
  ANAPC4_WD40   4 cptmDLiAlatedgellvfRl.ngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  +p   LiA a +dge+++  l +   ++tl   + + ev +La++p+   La a++ g v++++
   CCD26445.1 204 SPDGSLIASAGKDGEIMLWNLlEKTAMYTL---SAQDEVFALAFSPNRYWLAAATASG-VKIFS 263
                  566667888888888877766355566666...6777788888888888888877776.55555 PP

  == domain 5  score: 14.5 bits;  conditional E-value: 1.5e-05
  ANAPC4_WD40   8 DLiAlatedgellvfRlngqrvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                    +A at++g + +f l+ q + +         +++ + +  sL W+ dg+ L  +y d+ +r+ ++ +
   CCD26445.1 249 YWLAAATASG-VKIFSLDPQSLIDDlrpefagYNKAAEPHAVSLTWSADGQTLFAGYTDNVIRVWQVMT 316
                  5555555443.56666666665555666666666677778889********************999876 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   4.3e-06    0.0096     204     251 ..      50      98 ..      26     103 .. 0.83
   2 !    5.6   0.1    0.0023       5.1     223     255 ..     112     143 ..      98     176 .. 0.74
   3 ?   -1.9   0.0      0.44   9.9e+02     230     249 ..     165     184 ..     149     190 .. 0.70
   4 ?    0.7   0.0     0.072   1.6e+02     224     257 ..     200     234 ..     194     247 .. 0.83
   5 ?    3.1   0.0     0.013        29     229     250 ..     296     317 ..     277     318 .] 0.80

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 4.3e-06
                 SS--SS---TT-ECEEEEET......TTTEEEEEETT-EEEEEETTTTE CS
      Nup160 204 adpsrrksgasvalsldvavavvei.gqtylfalsrdgkLrvWnlltgk 251
                 +d +++   +s++  ++ +++++ + + +y++++s d++Lr+W+++tg 
  CCD26445.1  50 DDQKFGVPVRSFKGHSHIVQDCTLTqDGAYALSASWDKTLRLWDVATGE 98 
                 5555666667777778888999988899*******************86 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0023
                 T.....TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 223 vavveigqtylfalsrdgkLrvWnlltgkclat 255
                 +  ++ + +++ + srd++++vW +  g+clat
  CCD26445.1 112 SVAIDRKASMIISGSRDKTIKVW-TIKGQCLAT 143
                 333333899**************.666777776 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.44
                 TTEEEEEETT-EEEEEETTT CS
      Nup160 230 qtylfalsrdgkLrvWnllt 249
                   ++ ++  d+ +++Wnl+ 
  CCD26445.1 165 TVTVISAGNDKMVKAWNLNQ 184
                 445566667999*****975 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.072
                 ......TTTEEEEEETT-EEEEEETTTTEEEEEEE CS
      Nup160 224 avvei.gqtylfalsrdgkLrvWnlltgkclatid 257
                 av+ + + ++++++  dg++ +Wnll ++ ++t +
  CCD26445.1 200 AVTASpDGSLIASAGKDGEIMLWNLLEKTAMYTLS 234
                 455556888999999************99999854 PP

  == domain 5  score: 3.1 bits;  conditional E-value: 0.013
                 TTTEEEEEETT-EEEEEETTTT CS
      Nup160 229 gqtylfalsrdgkLrvWnlltg 250
                 + ++lfa + d+++rvW + t+
  CCD26445.1 296 DGQTLFAGYTDNVIRVWQVMTA 317
                 7789*************99885 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0043       9.6     170     221 ..      45      99 ..      36     181 .. 0.87
   2 !    9.5   0.0   0.00019      0.42     186     216 ..     194     224 ..     167     233 .. 0.79
   3 ?   -2.2   0.0      0.71   1.6e+03     180     212 ..     229     260 ..     224     264 .. 0.77
   4 !    5.7   0.0    0.0027         6     190     218 ..     288     316 ..     273     318 .] 0.86

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0043
    Ge1_WD40 170 gelsveeieegl..lkieehs.liveaafspdGtalatasedGevkffqvylede 221
                 ++l+ ++++ g+    ++ hs  + + +++ dG+    as d +++++ v   ++
  CCD26445.1  45 WKLTGDDQKFGVpvRSFKGHShIVQDCTLTQDGAYALSASWDKTLRLWDVATGET 99 
                 6777777777642146889995667899******9999**********9976554 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00019
    Ge1_WD40 186 ehsliveaafspdGtalatasedGevkffqv 216
                 ++ ++   + spdG  +a a +dGe+ ++ +
  CCD26445.1 194 HNGNVNAVTASPDGSLIASAGKDGEIMLWNL 224
                 3346888899****************99976 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 0.71
    Ge1_WD40 180 gllkieehsliveaafspdGtalatasedGevk 212
                 ++  ++ + ++   afsp+   la+a++ G+ k
  CCD26445.1 229 AMYTLSAQDEVFALAFSPNRYWLAAATASGV-K 260
                 5666777778899999999999999999884.4 PP

  == domain 4  score: 5.7 bits;  conditional E-value: 0.0027
    Ge1_WD40 190 iveaafspdGtalatasedGevkffqvyl 218
                  v+ ++s+dG +l +  +d +++ +qv  
  CCD26445.1 288 AVSLTWSADGQTLFAGYTDNVIRVWQVMT 316
                 566789*********************86 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.17   3.9e+02     170     184 ..     128     142 ..      81     148 .. 0.82
   2 !   14.9   0.1   8.5e-06     0.019      70     164 ..     162     257 ..     154     271 .. 0.78
   3 ?    2.7   0.0     0.046     1e+02     135     175 ..     277     311 ..     268     316 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.17
                 S-EEEEEETTTEEEE CS
       eIF2A 170 dngfkiwsysGklvy 184
                 d ++k+w+++G+ + 
  CCD26445.1 128 DKTIKVWTIKGQCLA 142
                 678888888888775 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 8.5e-06
                 TSS-EEEEESSSSCEEEEEECS...CEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--.EEEE-TTSSEEEEEE-T CS
       eIF2A  70 kskefaviyGkmpakvslfdlk...vkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanat.lvewspdgryvlTatta 164
                 + +  +vi    ++ v+ ++l+   +++ +  ++ + N++  sp g l++ aG     Ge+ +w+  +k+ + ++ a++ +  + +sp+  +++ at +
  CCD26445.1 162 NDDTVTVISAGNDKMVKAWNLNqfqIEADFVGHNGNVNAVTASPDGSLIASAGK---DGEIMLWNLLEKTAMYTLSAQDEVfALAFSPNRYWLAAATAS 257
                 6667778887778888888875533666666688999***************94...6*********99999999988776268999987777666654 PP

  == domain 3  score: 2.7 bits;  conditional E-value: 0.046
                 TEEEEEEE-TT--EEEE-TTSSEEEEEE-TTT-SSS-EEEE CS
       eIF2A 135 kkkiakaeaanatlvewspdgryvlTattaprlrvdngfki 175
                 +  ++ka +++a+++ ws dg+ +    t       n +++
  CCD26445.1 277 FAGYNKAAEPHAVSLTWSADGQTLFAGYTD------NVIRV 311
                 55678899999**********998776654......44444 PP

>> PD40  WD40-like Beta Propeller Repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.027        60       9      24 ..     196     211 ..     194     211 .. 0.77
   2 ?   -0.5   0.0      0.59   1.3e+03      15      24 ..     243     252 ..     240     252 .. 0.79
   3 ?    5.5   0.0    0.0074        17      15      23 ..     292     300 ..     287     301 .. 0.89

  Alignments for each domain:
  == domain 1  score: 3.7 bits;  conditional E-value: 0.027
                 S.EEEEEE-TTSSEEE CS
        PD40   9 gnegaPsfSPDGkrla 24 
                 gn  a + SPDG+ +a
  CCD26445.1 196 GNVNAVTASPDGSLIA 211
                 55567789****9997 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.59
                 EE-TTSSEEE CS
        PD40  15 sfSPDGkrla 24 
                 +fSP+  +la
  CCD26445.1 243 AFSPNRYWLA 252
                 7999988886 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0074
                 EE-TTSSEE CS
        PD40  15 sfSPDGkrl 23 
                 ++S DG++l
  CCD26445.1 292 TWSADGQTL 300
                 8******98 PP

>> KOW  KOW motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00026      0.58       3      20 ..       4      21 ..       3      23 .. 0.92
   2 ?   -1.4   0.0       1.2   2.6e+03       2       9 ..     163     170 ..     162     171 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00026
                SEEEESSSTTTTCEEEEE CS
         KOW  3 dhVkVvsGphkGktGkVv 20
                ++V V++G+ +G  G V+
  CCD26445.1  4 NEVLVLRGTLEGHNGWVT 21
                79*************997 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 1.2
                 TSEEEESS CS
         KOW   2 GdhVkVvs 9  
                 +d+V V+s
  CCD26445.1 163 DDTVTVIS 170
                 69999997 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.079   1.8e+02     204     235 ..      20      52 ..       8      96 .. 0.75
   2 ?    6.7   0.2    0.0012       2.6     201     248 ..     107     153 ..      81     182 .. 0.83
   3 ?    0.6   0.0     0.081   1.8e+02     204     232 ..     288     316 ..     166     318 .] 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.079
                    EEEEEEECCT.CEEEEEETTSEEEEEEEETTCE CS
  Nucleoporin_N 204 ivqlridssr.rilytlsskgvirvydlsasng 235
                    +++l+ +  + ++l ++s+++++  ++l+ + +
     CCD26445.1  20 VTSLATSAGQpNLLLSASRDKTLISWKLTGDDQ 52 
                    567777777789999999999999999985533 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0012
                    GG-EEEEEEECCTCEEEEEETTSEEEEEEEETTCEE-EEEEEEEHHHH CS
  Nucleoporin_N 201 reeivqlridssrrilytlsskgvirvydlsasngesslksdidirqi 248
                    ++++++++id +   +++ s++++i+v+ +   +   +l ++ d+ ++
     CCD26445.1 107 KSDVMSVAIDRKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ 153
                    57899************************99.4446666666666555 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.081
                    EEEEEEECCTCEEEEEETTSEEEEEEEET CS
  Nucleoporin_N 204 ivqlridssrrilytlsskgvirvydlsa 232
                     v+l+ +   + l++  ++ virv+++ +
     CCD26445.1 288 AVSLTWSADGQTLFAGYTDNVIRVWQVMT 316
                    45555555557777777888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       460  (0.0256568); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.56u 0.28s 00:00:00.84 Elapsed: 00:00:00.44
# Mc/sec: 2189.77
//
Query:       CCD26446.1  [L=234]
Description: hypothetical protein NDAI_0H02720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-24   85.0   4.2    3.6e-24   85.0   4.2    3.1  2  Spc24            Spc24 subunit of Ndc80
    0.00012   22.3   5.2     0.0017   18.6   0.5    2.6  2  Tup_N            Tup N-terminal
     0.0038   16.2  11.6     0.0086   15.0  11.6    1.6  1  Spc7             Spc7 kinetochore protein
     0.0053   16.3   6.2      0.008   15.7   6.2    1.2  1  Allexi_40kDa     Allexivirus 40kDa protein
     0.0077   15.7   2.8      0.014   14.9   2.8    1.4  1  HBM              Helical bimodular sensor domain
      0.008   16.2  11.5       0.12   12.4   0.8    2.9  2  BRE1             BRE1 E3 ubiquitin ligase
  ------ inclusion threshold ------
      0.024   14.3   5.4      0.041   13.5   5.4    1.3  1  GrpE             GrpE
      0.038   13.9   2.0      0.094   12.6   2.0    1.6  1  LemA             LemA family
      0.063   13.6   4.1       0.16   12.3   4.1    1.8  1  Lzipper-MIP1     Leucine-zipper of ternary complex factor MIP
      0.068   13.0   4.7        0.1   12.4   2.2    2.1  2  SKA2             Spindle and kinetochore-associated protein 2
       0.21   11.6   9.1       0.46   10.5   6.1    2.1  2  TPR_MLP1_2       TPR/MLP1/MLP2-like protein
       0.38   10.8   8.9       0.71    9.9   8.9    1.4  1  UPF0242          Uncharacterised protein family (UPF0242) N-t
       0.38   11.0  13.9        1.9    8.7  13.9    2.0  1  Seryl_tRNA_N     Seryl-tRNA synthetase N-terminal domain
       0.49   10.1   3.3       0.66    9.6   0.6    2.5  3  Nbl1_Borealin_N  Nbl1 / Borealin N terminal
       0.78   10.2   9.2        1.6    9.1   9.2    1.5  1  Fez1             Fez1
       0.81   10.2   5.2        1.4    9.4   4.1    1.9  2  DUF4208          Domain of unknown function (DUF4208)
       0.85    8.8   6.1        1.2    8.3   6.1    1.1  1  TMPIT            TMPIT-like protein
       0.97    8.8  10.3        1.4    8.2  10.3    1.2  1  DUF3552          Domain of unknown function (DUF3552)
        1.2    9.2   8.1        9.8    6.2   8.2    2.1  1  DUF1664          Protein of unknown function (DUF1664)
        1.4    8.7   6.3        2.8    7.7   6.2    1.5  1  Lectin_N         Hepatic lectin, N-terminal domain
        1.8    9.2  10.0        1.5    9.5   7.3    2.0  2  HIP1_clath_bdg   Clathrin-binding domain of Huntingtin-intera
        1.9    8.5   4.9         13    5.8   0.3    2.9  3  YrzO             YrzO-like protein
        2.7    7.9   7.1        9.3    6.1   0.6    2.2  2  ACCA             Acetyl co-enzyme A carboxylase carboxyltrans
        3.3    7.6   7.7        8.6    6.2   0.8    2.6  2  Synaptobrevin    Synaptobrevin
        4.2    7.5  11.5        3.9    7.6   8.0    2.3  3  Fib_alpha        Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> Spc24  Spc24 subunit of Ndc80
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   7.3      0.56     4e+02       4      43 ..      40      79 ..      18      90 .. 0.57
   2 !   85.0   4.2     5e-27   3.6e-24       2     105 .]      89     234 .]      88     234 .] 0.92

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.56
       Spc24  4 nekfriakelsdleselesleselaelkeeleeleeesee 43
                ++k r  +  ++ ese++sl+++l++  e+++ l+++ ++
  CCD26446.1 40 ELKNRSNELKTSKESEITSLRNNLESQGEKIQILNDNLNK 79
                3334444444444555555555555555555555555554 PP

  == domain 2  score: 85.0 bits;  conditional E-value: 5e-27
       Spc24   2 ldnekfriakelsdleselesleselaelkeeleeleeesee...........keser.................vedetllklklYrsLGielekdvn 72 
                  ++++++++kel++le+++ s++s+l+++ +++ + +++ ++           k+s++                  +++++l+lklYrs+Gi l+ d+n
  CCD26446.1  89 SKDQLIDVVKELDELENDVVSMRSQLDQKITRFVTSSSSPQRpplslsissppKNSHMnglsnyddetneilndpIAKANILRLKLYRSMGIILDIDNN 187
                 6899************************************************98888888888888888889988889999****************** PP

       Spc24  73 kvlirnkekgd..............vnvlnlddklseffianyiWdk 105
                 +vli+++++++              +++l+ldd+ls++f+++yiW+k
  CCD26446.1 188 QVLIDSYNYNNngnnndtnnnsnnkIDILPLDDDLSDYFKTKYIWEK 234
                 *********6556778889999999********************96 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.5   2.4e-06    0.0017      23      76 ..      15      66 ..       5      67 .. 0.85
   2 ?    5.3   0.4     0.034        25      41      68 ..      93     120 ..      69     124 .. 0.64

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.4e-06
       Tup_N 23 lkaqkdeyelkiqsqiqElqqirqtlyeLeeahrkikqqYEeeiarLkaeLesr 76
                l++ +++++  i++ i+ + +i  +l eL+++ +++k++ E ei+ L+++Les+
  CCD26446.1 15 LRETRENFD--IEHDIDTIININDKLTELKNRSNELKTSKESEITSLRNNLESQ 66
                566666666..588999999********************************87 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.034
       Tup_N  41 lqqirqtlyeLeeahrkikqqYEeeiar 68 
                 l  + ++l eLe+   +++ q ++ i+r
  CCD26446.1  93 LIDVVKELDELENDVVSMRSQLDQKITR 120
                 3344467788888888888888888877 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0  11.6   1.2e-05    0.0086     170     245 ..      20      95 ..       1     127 [. 0.72

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.2e-05
        Spc7 170 peleeeka.....eleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkse 245
                 ++++ e++     +++++l++l+++++el+++++ e+ +lr++l+++ ++i+ ++++l++ +e+ ++ ++k + +     +
  CCD26446.1  20 ENFDIEHDidtiiNINDKLTELKNRSNELKTSKESEITSLRNNLESQGEKIQILNDNLNKTKEESKNFKSKDQLI-----D 95 
                 4444444455555899************************************99999999999988877664433.....3 PP

>> Allexi_40kDa  Allexivirus 40kDa protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   6.2   1.1e-05     0.008      41     170 ..       9     153 ..       4     158 .. 0.59

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 1.1e-05
  Allexi_40kDa  41 GqLhaLhqnsLeWLthishdvdsiinklnpvslls.........qttlLselrdalrtltklldklksvekklelsaetasds....kllkklesie 124
                     L aL + + e +  i+hd+d iin  ++++ l          ++++++ lr++l+   ++++ l+++ +k++++ ++ +++    +++k+l+ +e
    CCD26446.1   9 NNLAALLRETRENF-DIEHDIDTIININDKLTELKnrsnelktsKESEITSLRNNLESQGEKIQILNDNLNKTKEESKNFKSKdqliDVVKELDELE 104
                   56777777777765.6999999999744333222223355555566777777777777777777776666666655555444411116789999999 PP

  Allexi_40kDa 125 tsleelhakldelsssetseseg...Psssptkassaeaaased.Lpiyq 170
                   +++ ++  +ld+ ++    +s++   P  s + +s  +++++ + L  y+
    CCD26446.1 105 NDVVSMRSQLDQKITRFVTSSSSpqrPPLSLSISSP-PKNSHMNgLSNYD 153
                   999999999987665554444440114444444444.3444444477776 PP

>> HBM  Helical bimodular sensor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   2.8   1.9e-05     0.014      20     108 ..       8      97 ..       6     126 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.9e-05
                 HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHH--SHHH..HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         HBM  20 LndllkdLRiaRlqyelsngdataaavqkkldelkaqlqklkakfkspen..vrlLqeqlalvqeyrksfnelraayesrnaaRqeldsaa 108
                 +n+l+  LR +R ++ ++ + +t  ++++kl elk+  ++lk++ +s+ +  + +L++q++++q + +++n++++  ++  +++ +l+   
  CCD26446.1   8 INNLAALLRETRENFDIEHDIDTIININDKLTELKNRSNELKTSKESEITslRNNLESQGEKIQILNDNLNKTKEESKN-FKSKDQLIDVV 97 
                 5666777888888888888888888888888888888888887766665433567888888888888888888765433.23444444333 PP

>> BRE1  BRE1 E3 ubiquitin ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.8   0.00017      0.12      42      86 ..      16      60 ..      11      65 .. 0.83
   2 ?    6.2   6.7     0.015        11       9      70 ..      53     116 ..      50     127 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00017
        BRE1 42 kadqkyfaamrskdalenelkkLnkllsKsselieqLkelekefv 86
                ++ ++ f++++++d++ n + kL++l ++s+el +  +   ++++
  CCD26446.1 16 RETRENFDIEHDIDTIININDKLTELKNRSNELKTSKESEITSLR 60
                578999**************************9877655555555 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.015
        BRE1   9 ekafeelseqlskkvkeltileekklrleaeka..kadqkyfaamrskdalenelkkLnkllsK 70 
                 e ++  l+++l++  ++++il +++++++ e +  k + +  ++ ++ d len+++ ++++l++
  CCD26446.1  53 ESEITSLRNNLESQGEKIQILNDNLNKTKEESKnfKSKDQLIDVVKELDELENDVVSMRSQLDQ 116
                 6677778888888888888888888888877664467777888888888999988888888876 PP

>> GrpE  GrpE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   5.4   5.7e-05     0.041      11      85 ..      35     115 ..      25     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 5.7e-05
                 HHHHCCCCCCTTCHHH....CTTSCCCCCCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC....HH CS
        GrpE  11 edeeeeleeeleelek....evkelkekllrllaefenlrkrtekekeeakkfaiekfakdLLpvlDnleralksak..en 85 
                 +d+++el+++ +el++    e+ +l ++l+ + ++++ l+ +++k kee k+f+ ++ + d ++ lD le  + s++   +
  CCD26446.1  35 NDKLTELKNRSNELKTskesEITSLRNNLESQGEKIQILNDNLNKTKEESKNFKSKDQLIDVVKELDELENDVVSMRsqLD 115
                 56666666666665554446999***********************************************99999884333 PP

>> LemA  LemA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.0   0.00013     0.094      51     114 ..      60     124 ..      32     130 .. 0.73

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00013
        LemA  51 eekaeaen.qlssalsrllavaEnYPdLkanenfleLqeelegtEnriavaRrrYneavreyntk 114
                 ++  e++  +++    +l+ + E+  ++k+++++ +  +el ++En++   R++  ++++++ t+
  CCD26446.1  60 RNNLESQGeKIQILNDNLNKTKEESKNFKSKDQLIDVVKELDELENDVVSMRSQLDQKITRFVTS 124
                 333333330344445689999*************************************9999776 PP

>> Lzipper-MIP1  Leucine-zipper of ternary complex factor MIP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.1   0.00023      0.16       4      75 ..      47     115 ..      33     124 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00023
  Lzipper-MIP1   4 ekrssLeqeveqLqerLqeeeklrraLekalssssdgsllslstllpkkakellkeiallEeevvkLEqkll 75 
                   e ++s e e++ L++ L+ + +  ++L + l+++++    s +  + ++  +  ke+  lE++vv ++++l+
    CCD26446.1  47 ELKTSKESEITSLRNNLESQGEKIQILNDNLNKTKEE---SKNFKSKDQLIDVVKELDELENDVVSMRSQLD 115
                   55666689***********************544433...33334779*******************99987 PP

>> SKA2  Spindle and kinetochore-associated protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.2   0.00014       0.1      47     100 ..      31      84 ..      26      94 .. 0.84
   2 ?    1.1   0.2      0.45   3.2e+02      38      63 ..      91     116 ..      78     120 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00014
        SKA2  47 lkkvkeelqaLkeqceellaekkelidkirttlvanrellqqLqasaelpplse 100
                 + +++++l++Lk++ +el ++k+  i+++r++l ++ e +q L+ +++ + +++
  CCD26446.1  31 IININDKLTELKNRSNELKTSKESEITSLRNNLESQGEKIQILNDNLNKTKEES 84 
                 668999*************************************99985554444 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.45
        SKA2  38 eNpvkLlerlkkvkeelqaLkeqcee 63 
                   ++ ++++l ++ +++ ++++q+++
  CCD26446.1  91 DQLIDVVKELDELENDVVSMRSQLDQ 116
                 36788999999999999999999875 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.1   0.00064      0.46      54     120 ..      26      92 ..      13      94 .. 0.91
   2 ?    6.5  10.2     0.012       8.3       5      90 ..      37     117 ..      33     129 .. 0.76

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00064
  TPR_MLP1_2  54 edvkelqalreelnelkaeiaelkaeaesakaeleeseesweeqkeelekelselekriedlneqNk 120
                  d++++ +++++l elk++ +elk++ es  ++l ++ es  e+ + l ++l+++++  ++ +++ +
  CCD26446.1  26 HDIDTIININDKLTELKNRSNELKTSKESEITSLRNNLESQGEKIQILNDNLNKTKEESKNFKSKDQ 92 
                 6889999999***********************************************9999887655 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.012
  TPR_MLP1_2   5 sleeeikslkeekeeaeaklqklqedlekqaeiakeaqqkYerelvkhaedvkelqalreelnelkaeiaelkaeaesakaelees 90 
                 +l+e +++ +e k++ e+++++l+++le+q e  +  ++     l+k +e++k+ +  +++l ++ +e+ el++++ s +++l+++
  CCD26446.1  37 KLTELKNRSNELKTSKESEITSLRNNLESQGEKIQILND----NLNKTKEESKNFK-SKDQLIDVVKELDELENDVVSMRSQLDQK 117
                 466667778888888888999999999999999988888....6777777777764.57777777777777777777777777765 PP

>> UPF0242  Uncharacterised protein family (UPF0242) N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   8.9     0.001      0.71      76     168 ..      14     117 ..       6     125 .. 0.55

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.001
     UPF0242  76 klteldeglktkee.........aleelqeeeeeLkee....ldakeeelerlkeenqqLqekleaiaedfeelkleleeqLaekqellqeyqetieeq 161
                 +l e++e+++++++         +l el+++ +eLk      + +  ++le   e+ q L+  l++++e+ +++k  +++qL    + l+e+++ +++ 
  CCD26446.1  14 LLRETRENFDIEHDidtiinindKLTELKNRSNELKTSkeseITSLRNNLESQGEKIQILNDNLNKTKEESKNFK--SKDQLIDVVKELDELENDVVSM 110
                 566666666666666633333333333333333333322223444444444444444455555555555555554..5677777777788888888888 PP

     UPF0242 162 rsvlekr 168
                 rs l+++
  CCD26446.1 111 RSQLDQK 117
                 8888877 PP

>> Seryl_tRNA_N  Seryl-tRNA synthetase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  13.9    0.0027       1.9       1      94 [.       1      95 [.       1     122 [. 0.84

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0027
                  ---HHHHHH-HHHHHHHHCCCTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC.CCCTTS-TCCCCCCCHHHHHHHHHHHHHHHHHH CS
  Seryl_tRNA_N  1 MLDiklirenpeavkeklkkRgedkadvdelleldekrrelqveleelqaerNelskeIgk.akkkkedaeeliaevkelkeelkaleaelkele 94
                  M D + + +n++a+ +  ++ ++ + d+d+++ +++k  el+++ +el++ + +   +  + +  ++e+++ l +  ++ kee k+ + + + ++
    CCD26446.1  1 MADNDPLINNLAALLRETRENFDIEHDIDTIININDKLTELKNRSNELKTSKESEITSLRNnLESQGEKIQILNDNLNKTKEESKNFKSKDQLID 95
                  678888999****************************************9887666655550555559999999999999999999887655444 PP

>> Nbl1_Borealin_N  Nbl1 / Borealin N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.6   0.00093      0.66       7      38 ..      20      66 ..      19      70 .. 0.86
   2 ?   -1.4   0.0       2.7   1.9e+03      13      28 ..     103     118 ..     100     123 .. 0.58
   3 ?   -2.0   0.0         4   2.8e+03       6      18 ..     149     161 ..     149     173 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00093
  Nbl1_Borealin_N  7 enfdlE...............veeRirrlraelelllktlrnrfele 38
                     enfd+E               +++R ++l+++ e+ +++lrn++e +
       CCD26446.1 20 ENFDIEhdidtiinindklteLKNRSNELKTSKESEITSLRNNLESQ 66
                     688888888888888888888**********************9965 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 2.7
  Nbl1_Borealin_N  13 veeRirrlraelelll 28 
                      +e+ +  +r++l++ +
       CCD26446.1 103 LENDVVSMRSQLDQKI 118
                      4445556677666544 PP

  == domain 3  score: -2.0 bits;  conditional E-value: 4
  Nbl1_Borealin_N   6 LenfdlEveeRir 18 
                      L+n+d E +e  +
       CCD26446.1 149 LSNYDDETNEILN 161
                      7899999888765 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   9.2    0.0022       1.6      38     112 ..      39     116 ..      10     162 .. 0.61

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.0022
        Fez1  38 aqlrelrakle.ekeeeikeleesleektlelevcenelqrkkseaellrekvekle..eelkelreelselsleeee 112
                 ++l++ +++l+ +ke+ei++l+++le++ ++++ ++++l+++k+e+++++ k + ++  +el el +++ ++ ++ ++
  CCD26446.1  39 TELKNRSNELKtSKESEITSLRNNLESQGEKIQILNDNLNKTKEESKNFKSKDQLIDvvKELDELENDVVSMRSQLDQ 116
                 334444445542456666666666666666666666666666666666555544332114555555554444433333 PP

>> DUF4208  Domain of unknown function (DUF4208)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.1    0.0019       1.4      17      68 ..      33      86 ..      17      93 .. 0.84
   2 ?    0.2   0.2       1.4     1e+03       7      30 ..      85     108 ..      79     122 .. 0.65

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0019
     DUF4208 17 pvkksLkrLkkltkekl.lskkerakilkkeLlkiGdfIdellkekke..ekkek 68
                 ++++L +Lk+ ++e l  sk++++  l++ L + G++I+ l ++ ++  e++++
  CCD26446.1 33 NINDKLTELKNRSNE-LkTSKESEITSLRNNLESQGEKIQILNDNLNKtkEESKN 86
                6899********988.559********************9999888775444444 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 1.4
     DUF4208   7 deeeckellrpvkksLkrLkkltk 30 
                 ++ + k+ l +v k+L +L+++  
  CCD26446.1  85 KNFKSKDQLIDVVKELDELENDVV 108
                 333468889999999999998744 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   6.1    0.0016       1.2      10      97 ..      34     122 ..      24     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0016
       TMPIT  10 efkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvk.eeeeeeveelkeelkerkkvlkevesllpkknglyl 97 
                   ++l e +++ ++   + ++ ++++++++++q ++++ l+++l+k+k+++k  ++++++ ++ +el+e ++ + ++ s l +k  +++
  CCD26446.1  34 INDKLTELKNRSNELKTSKESEITSLRNNLESQGEKIQILNDNLNKTKEESKnFKSKDQLIDVVKELDELENDVVSMRSQLDQKITRFV 122
                 4455555555556666667788899999******************99986636778889999999************99999977776 PP

>> DUF3552  Domain of unknown function (DUF3552)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  10.3     0.002       1.4      53     134 ..      36     119 ..      33     123 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.002
     DUF3552  53 ealleakeeihklreelekelkerrnelqrlekRllqkeetLdrkeesle..kkeesleekekelkqkeqsleekeeeleelve 134
                  +l+e k+   +l++  e+e+++ rn+l+++ ++++  +++L++ +e+ +  k  ++l +  kel++ e+++ +++++l++ ++
  CCD26446.1  36 DKLTELKNRSNELKTSKESEITSLRNNLESQGEKIQILNDNLNKTKEESKnfKSKDQLIDVVKELDELENDVVSMRSQLDQKIT 119
                 589999************************************997665442245667888899999999999999999998775 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   8.2     0.014       9.8      44     114 ..      32     101 ..      11     120 .. 0.74

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.014
     DUF1664  44 esvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvkeavegle 114
                  ++  +l+++++  ++ k   +s+i ++ ++l++q e ++ +++++++ +e+ ++++++ + + ++v++l+
  CCD26446.1  32 ININDKLTELKNRSNELKTSKESEITSLRNNLESQGEKIQILNDNLNKTKEESKNFKSKDQLI-DVVKELD 101
                 567778888888888888888889999999999999999999999999999999887664433.3444433 PP

>> Lectin_N  Hepatic lectin, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.2    0.0039       2.8      53     118 ..      34     101 ..      30     117 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0039
    Lectin_N  53 LqreLetLketfsnfssstlaeiqalssqggslsekvtsleaklekkqqdlkadhs..elllhvkqlv 118
                 +   L+ Lk+  +++ +s ++ei +l+ + +s +ek++ l+ +l+k +++ k+ +s  +l++ vk+l 
  CCD26446.1  34 INDKLTELKNRSNELKTSKESEITSLRNNLESQGEKIQILNDNLNKTKEESKNFKSkdQLIDVVKELD 101
                 5677889999999999*******************************999998776335777777653 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3    0.0021       1.5      31      88 ..      33      90 ..      23     103 .. 0.85
   2 ?    0.5   0.1       1.3   9.2e+02      24      46 ..      95     117 ..      87     124 .. 0.56

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.0021
  HIP1_clath_bdg 31 eleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssq 88
                    +++++l +lk+ +++    +++e+ +L+++le++ ++++ l+  L+++++++++ +s+
      CCD26446.1 33 NINDKLTELKNRSNELKTSKESEITSLRNNLESQGEKIQILNDNLNKTKEESKNFKSK 90
                    578999****999999999***************************999999887764 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 1.3
  HIP1_clath_bdg  24 everekkeleeelerlkeeaerk 46 
                     +v +e +ele+++ +++++ ++k
      CCD26446.1  95 DVVKELDELENDVVSMRSQLDQK 117
                     44444455555555555555444 PP

>> YrzO  YrzO-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       5.4   3.9e+03      16      27 ..      10      21 ..       8      26 .. 0.76
   2 ?    5.8   0.3     0.018        13      25      44 ..      60      79 ..      58      81 .. 0.91
   3 ?    3.8   0.1     0.073        52      26      43 ..      85     102 ..      80     106 .. 0.89

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 5.4
        YrzO 16 ELAAiNRNGRKk 27
                 LAA+ R  R +
  CCD26446.1 10 NLAALLRETREN 21
                588888887766 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.018
        YrzO 25 RKkiKqqAElielLKElkek 44
                R ++  q E i++L ++++k
  CCD26446.1 60 RNNLESQGEKIQILNDNLNK 79
                789999***********987 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.073
        YrzO  26 KkiKqqAElielLKElke 43 
                 K+ K +  li+++KEl e
  CCD26446.1  85 KNFKSKDQLIDVVKELDE 102
                 999************976 PP

>> ACCA  Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   2.3     0.027        19       7      48 ..      30      71 ..      22      81 .. 0.77
   2 ?    6.1   0.6     0.013       9.3      10      66 ..      76     131 ..      67     139 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.027
        ACCA  7 piaeleekieelkklaeesevdlseeieklekkleklkkeiy 48
                 i ++++k++elk+ ++e +++ ++ei++l+++le++ ++i+
  CCD26446.1 30 TIININDKLTELKNRSNELKTSKESEITSLRNNLESQGEKIQ 71
                466788899999999999888889999999999888877765 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.013
        ACCA  10 eleekieelkkl.aeesevdlseeieklekkleklkkeiyknltpwqkvqlaRhpeRp 66 
                 +l+++ ee k++ ++++ +d+ +e+++le+ + ++++++ +++t++  v+ + +p+Rp
  CCD26446.1  76 NLNKTKEESKNFkSKDQLIDVVKELDELENDVVSMRSQLDQKITRF--VTSSSSPQRP 131
                 334444444444233477899*****************99999876..4445556665 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.8     0.012       8.6      20      46 ..      25      51 ..       8      54 .. 0.87
   2 ?    4.7   0.8     0.035        25      27      53 ..      64      90 ..      56      98 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.012
                   CCHHHHCHCCCCCHHHHCCCCHHHHHH CS
  Synaptobrevin 20 keNidkvlergekldeLvdktenLqss 46
                   +++id +++ ++kl eL++++++L++s
     CCD26446.1 25 EHDIDTIININDKLTELKNRSNELKTS 51
                   689*********************986 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.035
                   HCCCCCHHHHCCCCHHHHHHHHHHHHH CS
  Synaptobrevin 27 lergekldeLvdktenLqssaqqFkkq 53
                    + gek+  L+d  ++ ++++++Fk++
     CCD26446.1 64 ESQGEKIQILNDNLNKTKEESKNFKSK 90
                   5689********************986 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   8.0    0.0055       3.9      41     123 ..       8      89 ..       3      95 .. 0.79
   2 ?    0.7   0.7      0.74   5.3e+02      35      99 ..      98     116 ..      76     126 .. 0.44
   3 ?    0.7   0.1      0.77   5.5e+02      35      49 ..      98     112 ..      88     161 .. 0.66

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0055
                 CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  41 eneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqesnirvLqnvlesneqkiqkLeq 123
                  n+l+ + ++t+e +++ ++i+++++ + k ++  +n  ++++++ e+ei+ l++++ +q ++i+ L ++l++ +++ ++ ++
  CCD26446.1   8 INNLAALLRETRENFDIEHDIDTIININDKLTE-LKNRSNELKTSKESEITSLRNNLESQGEKIQILNDNLNKTKEESKNFKS 89 
                 567777778888888888888888888888877.6888888888888889999999999999999999998888888777765 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.74
                 HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC CS
   Fib_alpha  35 kdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketida 99 
                 k+l                                              +ele++++ ++ ++d+
  CCD26446.1  98 KEL----------------------------------------------DELENDVVSMRSQLDQ 116
                 111..............................................2333333333333333 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.77
                 HHHCCCCCCCCCCCC CS
   Fib_alpha  35 kdlekleneleeisn 49 
                 k+l++len++ ++++
  CCD26446.1  98 KELDELENDVVSMRS 112
                 333333333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2186  (0.121925); expected 358.6 (0.02)
Passed bias filter:                      650  (0.0362541); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.60u 0.31s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 1555.80
//
Query:       CCD26447.1  [L=643]
Description: hypothetical protein NDAI_0H02730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.7e-10   38.7  12.2    6.7e-10   38.7  12.2    2.2  2  zf-C3HC4_3   Zinc finger, C3HC4 type (RING finger)
     0.0007   18.7   9.5     0.0014   17.7   9.5    1.4  1  VESA1_N      Variant erythrocyte surface antigen-1
  ------ inclusion threshold ------
      0.015   15.1  11.1      0.015   15.1  11.1    1.9  2  Prok-RING_4  Prokaryotic RING finger family 4


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.2      0.13     8e+02      36      46 ..     560     570 ..     552     573 .. 0.67
   2 !   38.7  12.2   1.1e-13   6.7e-10       4      48 ..     587     632 ..     585     634 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.13
                 TT-B-TTT--B CS
  zf-C3HC4_3  36 rkkkCpiCrrp 46 
                 +kk+C  C+ +
  CCD26447.1 560 EKKNCQNCNNE 570
                 67888888766 PP

  == domain 2  score: 38.7 bits;  conditional E-value: 1.1e-13
                 B-TTTSSSBS-EEETTEEEEEE-HHHHHHHHH.TT-B-TTT--B-- CS
  zf-C3HC4_3   4 eCviClerprnvvllpCgHlvlCeeCaekllk.rkkkCpiCrrpie 48 
                  Cv+C++++rnv+l+pC++++lCe+C  +l     kkC +Cr++i+
  CCD26447.1 587 SCVVCKTNERNVILWPCKCFALCEDCRVSLALrGYKKCVCCRTEIR 632
                 7*****************************7679**********97 PP

>> VESA1_N  Variant erythrocyte surface antigen-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   9.5   2.3e-07    0.0014      94     175 ..     547     630 ..     512     639 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 2.3e-07
     VESA1_N  94 hGkekceylkdvkeenkcedcecmkwevkkaddeghhlgrkctrckdsgeeee..eckcstgesecsageeckcakaGkcckcc 175
                    +  +yl+d  e+++c++c+  k ++k+ad + + +   c  ck ++++     ckc +  ++c+ +   +  k+  cc+  
  CCD26447.1 547 EILTRSKYLNDFYEKKNCQNCNNEKTKDKDADMKDEVFDPSCVVCKTNERNVIlwPCKCFALCEDCRVSLALRGYKKCVCCRTE 630
                 4455689****************************************999877889****999999998888888888888764 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.8     1e+04       9      16 ..     419     426 ..     417     427 .. 0.76
   2 ?   15.1  11.1   2.5e-06     0.015       1      41 [.     588     632 ..     588     636 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 1.8
  Prok-RING_4   9 kkailepC 16 
                  +  ++epC
   CCD26447.1 419 QSEVIEPC 426
                  67799*** PP

  == domain 2  score: 15.1 bits;  conditional E-value: 2.5e-06
  Prok-RING_4   1 CvlCgeqekkailepCgHl.vCkeCfdskdls...sCPlCqrris 41 
                  Cv+C+++e+++il pC+   +C++C  s  l     C  C+++i 
   CCD26447.1 588 CVVCKTNERNVILWPCKCFaLCEDCRVSLALRgykKCVCCRTEIR 632
                  *************************99996655559*****9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1262  (0.0703888); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.45
# Mc/sec: 4277.25
//
Query:       CCD26448.1  [L=592]
Description: hypothetical protein NDAI_0H02740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-93  313.9   0.0    1.6e-93  313.4   0.0    1.2  1  AICARFT_IMPCHas  AICARFT/IMPCHase bienzyme
    2.6e-24   85.2   0.3    1.6e-23   82.7   0.0    2.1  2  MGS              MGS-like domain


Domain annotation for each model (and alignments):
>> AICARFT_IMPCHas  AICARFT/IMPCHase bienzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.4   0.0   1.8e-97   1.6e-93       1     296 []     136     460 ..     136     460 .. 0.92

  Alignments for each domain:
  == domain 1  score: 313.4 bits;  conditional E-value: 1.8e-97
                      HHHTTTT-EEE-SGGGHHHHHHHHHC.T.B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE...EEEEEEEEESSSSSTTS-E.EEEE-TTS CS
  AICARFT_IMPCHas   1 AAKNhksVtvvvdpadYeevleelkk.gevsletrkklaakaFahtaaYDaaiaeylskqlpetlklslekkqkLrYGeNphQka.alyeeeee 92 
                      AAKNh++Vt+++dp+dY+ +l+el++ + +s+e+r+k+a+kaF+hta+YD++i++y++kq++     +++++ +LrYG+NphQk+ ++y ++e 
       CCD26448.1 136 AAKNHARVTILSDPNDYSIFLNELSAnKCISQELRNKFALKAFEHTAEYDSTISDYFRKQYS-----EGKQQITLRYGANPHQKPaQAYVTKE- 223
                      9*************************889****************************99996.....588999***********978886444. PP

                      TTHHH-EEEESS---HHHHHHHHHHHHHHCTS..E....EEEEEETTEEEEEEE...................ESSHHHHHHHHHCCSHHHHTT CS
  AICARFT_IMPCHas  93 eglakaeqlqGkelsynNllDadaalelvkef..a....avaivKHanpcGvAv...................getlaeAyekAlaaDpvSaFG 161
                       +   ++ l+G +++y+NllDa +++ lvke+  +    a+a++KH++p+G+Av                    + la+Ay++A+ aD++S+FG
       CCD26448.1 224 -EELPFKVLSG-SPGYINLLDALNSWPLVKELsaTlnlpAAASFKHVSPAGAAVglplsdvekqiyfvndienISPLANAYARARGADRMSSFG 315
                      .4567889***.******************997614566888**************************9998744599**************** PP

                      EEEEECCEE-HHHHHHHTTS-ECEEEECEE-CCHHHCCTTS..SS-EEEE-SS-......EEEEETTEEEEEE--G..TTCCCS.EEECS.C-- CS
  AICARFT_IMPCHas 162 giialnrevdaetaeeikkefleviiApsfeeealeilkkk..knlrvlelkee......elrsvsgglLvqerdeakieeeel.kvvtk.kkp 245
                      ++ial++ vd+ ta++i++e++++iiAp++e+ealeilkkk  +++++l+++++      e r+v g +L q+r++a i+++++ ++v+k k  
       CCD26448.1 316 DWIALSNIVDTPTAKIISREVSDGIIAPGYEPEALEILKKKkgGKYCILQVDPNfipdtvEKRQVFGVTLEQKRNDAIINTSTFnEIVSKnKDL 409
                      **************************************776477*********5566777999998888***********99887899994468 PP

                      -HHHHHHHHHHHHHCCCS-SS-EEEEETTEEEEEE-SSSSHHHHHHHHHHH CS
  AICARFT_IMPCHas 246 teeeledllfawkvvkhvkSNaivlakdgqtvgiGaGqmsRvdsarlAvek 296
                      te+++ dl++a++++k+++SN++++ak+g+++g+GaGq+sR++++rlA+ek
       CCD26448.1 410 TEQAIIDLTVATIALKFTQSNSVCYAKNGMIIGLGAGQQSRIHCTRLAGEK 460
                      9***********************************************997 PP

>> MGS  MGS-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   1.8e-27   1.6e-23       1      95 []      17     131 ..      17     131 .. 0.97
   2 ?    0.0   0.1      0.11   9.8e+02      57      91 ..     386     419 ..     367     423 .. 0.66

  Alignments for each domain:
  == domain 1  score: 82.7 bits;  conditional E-value: 1.8e-27
                 THHHHHHHHHHTTCEEEEEHHHHHHHHHTT--EEECCCCHSTGSGGTHCH.................HHHHHHHTTSCC...EEEEE--THHHHHHCHH CS
         MGS   1 glvelakklkelgfellATgGTakllkeagipvtevvektgegerlggrv.................eildaikngeid...lvintlypfkatvakdg 79 
                 gl++la+ l e+++++l++gGTa+++++ag pv++v+ +t+ +e+lggrv                 ++++++ +++i+   +v+++lypfk+tv+k g
  CCD26448.1  17 GLLDLARGLIENNVRILSSGGTARMIRDAGFPVEDVSSITHAPEMLGGRVktlhpavhggilardiaSDEKDLIEQNIEkidFVVCNLYPFKETVSKVG 115
                 689****************************************************************999999998888888***************** PP

                 HHHHHHHHHTTSHEES CS
         MGS  80 ykirraaenidIplpt 95 
                 +++ +a+e+idI+++t
  CCD26448.1 116 VTVPEAVEEIDIGGVT 131
                 **************98 PP

  == domain 2  score: 0.0 bits;  conditional E-value: 0.11
                 HTTSCCEEEEE--THHHHHHCHHHHHHHHHHHTTS CS
         MGS  57 kngeidlvintlypfkatvakdgykirraaenidI 91 
                 +++  d++i ++++f++ v+k++  +++a+++  +
  CCD26448.1 386 EQKRNDAII-NTSTFNEIVSKNKDLTEQAIIDLTV 419
                 555555555.5567888887555566777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       455  (0.0253779); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 4376.18
//
Query:       CCD26449.1  [L=512]
Description: hypothetical protein NDAI_0H02750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.6e-16   59.2   0.1    8.7e-16   57.9   0.1    1.7  1  CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CA
    6.4e-10   39.5   7.4     0.0097   16.7   0.0    5.3  6  WD40         WD domain, G-beta repeat
    3.9e-08   33.5   0.9     0.0016   18.7   0.1    3.2  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> CAF1C_H4-bd  Histone-binding protein RBBP4 or subunit C of CAF1 complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.1   1.5e-19   8.7e-16       1      66 [.     106     173 ..     106     174 .. 0.83

  Alignments for each domain:
  == domain 1  score: 57.9 bits;  conditional E-value: 1.5e-19
                  HHHHHHHHHHHHHEEEEEEEE-SS--S-EEE-S-B--...-.EEEEEEEE.----TTSS-EEEEEEEEEEE CS
  CAF1C_H4-bd   1 eeylewkknapfLYdmlhshslewPsLsfdwlPdtvs...s.lskqrllv.Gtqtsgkeqnylyvakvslp 66 
                  +e le ++++   Y+mlh+++++wP+L+ d++Pd+       + ++ l+  +tq+s+k++n+l+v+++s++
   CCD26449.1 106 DEVLEADPTV---YEMLHNVNVPWPCLTLDIIPDSLGserRnYPQSLLMTtATQASKKKENELMVLSLSNL 173
                  7999******...******************99965454322333336669******************98 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         3   1.8e+04      25      38 .]     228     243 ..     216     243 .. 0.65
   2 ?    3.8   0.0      0.02   1.2e+02       2      21 ..     264     285 ..     263     302 .. 0.73
   3 !   15.4   0.1   4.2e-06     0.025      10      38 .]     322     351 ..     314     351 .. 0.71
   4 ?    2.6   0.9     0.049   2.9e+02      11      38 .]     368     396 ..     357     396 .. 0.66
   5 !   16.7   0.0   1.6e-06    0.0097       2      38 .]     409     447 ..     408     447 .. 0.85
   6 ?   -1.3   0.0      0.82   4.9e+03      13      32 ..     483     503 ..     474     504 .. 0.57

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 3
                 EEEE..ETTSEEEEEE CS
        WD40  25 lasG..sdDgtvriWd 38 
                 ++++  s++g v+i+d
  CCD26449.1 228 VLTAtmSENGEVYIFD 243
                 4555466799999987 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.02
                 EEEEEEESSSSE..EEEEEETT CS
        WD40   2 qclrtltGHssv..tslafspd 21 
                 ++++t++ H++v  ++l++sp+
  CCD26449.1 264 RPIHTIKSHGNVegYALDWSPS 285
                 689******88*8889988887 PP

  == domain 3  score: 15.4 bits;  conditional E-value: 4.2e-06
                 SSSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40  10 Hssvtslafspdgawl.asGsdDgtvriWd 38 
                  +s+ ++++s+    + as++ Dg +riWd
  CCD26449.1 322 NKSIEDIQWSRTEGTVfASAGCDGYIRIWD 351
                 3779999877777776244444*******9 PP

  == domain 4  score: 2.6 bits;  conditional E-value: 0.049
                 SSEEEEEEETTSSEE.EEEETTSEEEEEE CS
        WD40  11 ssvtslafspdgawl.asGsdDgtvriWd 38 
                 ++v+ +++s+   +l asG+d+g   +Wd
  CCD26449.1 368 TDVNVISWSDKLGYLlASGDDNGVWGVWD 396
                 45777777777777615677777777776 PP

  == domain 5  score: 16.7 bits;  conditional E-value: 1.6e-06
                 EEEEEEESS.SSEEEEEEETTSSEEE.EEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawla.sGsdDgtvriWd 38 
                 q++  ++ H + +ts++f+p    ++  +s+D+tv +Wd
  CCD26449.1 409 QPVAQYDFHkGAITSISFNPLDESIVaVASEDNTVTLWD 447
                 67888999*555*****99999997626799*******9 PP

  == domain 6  score: -1.3 bits;  conditional E-value: 0.82
                 EEEEEEETTSSE........EEEEETTS CS
        WD40  13 vtslafspdgaw........lasGsdDg 32 
                 v ++      +w        +++G+ Dg
  CCD26449.1 483 VKDV------KWhkqipgalVSTGT-DG 503
                 5566......444444444266777.76 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.65   3.9e+03       9      66 ..     229     243 ..     211     274 .. 0.68
   2 !   18.7   0.1   2.6e-07    0.0016      17      91 ..     298     377 ..     279     378 .. 0.68
   3 !   11.8   0.1   3.8e-05      0.23      29      90 ..     411     480 ..     388     491 .. 0.70

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.65
  ANAPC4_WD40   9 LiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlld 66 
                  L A ++e+ge+++                                           +d
   CCD26449.1 229 LTATMSENGEVYI-------------------------------------------FD 243
                  4444445555544...........................................44 PP

  == domain 2  score: 18.7 bits;  conditional E-value: 2.6e-07
  ANAPC4_WD40  17 gellv.fRlngqrvwtl..eedkedsevrsLaW.kpdgklLavaysdgevrlldaesgkvvhslsvksek.avtclgWge 91 
                  g+++  +R   + v +    + ++++++++++W + +g+++a a  dg +r+ d  s+k   ++svk+++  v+ ++W++
   CCD26449.1 298 GQIYFtQRHTSKWVTDKqpFTVSNNKSIEDIQWsRTEGTVFASAGCDGYIRIWDTRSKKHKPAISVKASNtDVNVISWSD 377
                  55554134444444443443457899*******44689****************999888777776655447******86 PP

  == domain 3  score: 11.8 bits;  conditional E-value: 3.8e-05
  ANAPC4_WD40  29 vwtleedkedsevrsLaWkp.dgklLavaysdgevrlldaesgkvvhslsvksek.........avtclgWg 90 
                  v +   d +++ ++s++++p d+++ ava +d++v l d + +   ++++ ++ +         +   ++W+
   CCD26449.1 411 VAQY--DFHKGAITSISFNPlDESIVAVASEDNTVTLWDLSVEADDEEIKQQAAEtkelqqippQLLFVHWQ 480
                  4444..88999********9678899***********98764443333333333333467777755555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1174  (0.0654805); expected 358.6 (0.02)
Passed bias filter:                      613  (0.0341904); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 3620.86
//
Query:       CCD26450.1  [L=307]
Description: hypothetical protein NDAI_0H02760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-10   39.7   0.0    8.3e-10   39.0   0.0    1.5  1  HAD_2           Haloacid dehalogenase-like hydrolase
    9.4e-10   39.1   0.0    1.3e-09   38.7   0.0    1.2  1  Hydrolase       haloacid dehalogenase-like hydrolase
    1.9e-07   31.0   0.0    3.5e-07   30.2   0.0    1.4  1  Hydrolase_like  HAD-hyrolase-like


Domain annotation for each model (and alignments):
>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   1.4e-13   8.3e-10      61     174 ..     106     231 ..      24     235 .. 0.78

  Alignments for each domain:
  == domain 1  score: 39.0 bits;  conditional E-value: 1.4e-13
       HAD_2  61 kieellrkyneekkkkevkpydgvkelLeeLkea..gyklgivTsksreaveekleqlgiesyF.dvivtsedvekkKPdpeviekalekl........ 148
                 +++e+l +++ ++      + +++ elL+++ke+  ++ +gi+++  +  + + le+lgi +yF d ++ s d++ kKP+ ev++ +l+          
  CCD26450.1 106 MVNEILLRFEGSQAY---AIHPDLLELLKYIKEMhpNVVMGIISNT-DPIIFKVLENLGILKYFkDYVYLSYDTGIKKPNVEVFNFVLKDIvktnpsln 200
                 555555555555555...788999999999987634899****986.6677889**********557999********************99******* PP

       HAD_2 149 ....klkkeeviyvGDsp.tDieaakkagik 174
                        k +++ +GD+  +D++aak ag +
  CCD26450.1 201 kgdlSNLKRQCWHIGDELhNDMMAAKDAGWN 231
                 9998778899********9*********976 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   2.2e-13   1.3e-09       2     210 .]      22     229 ..      21     229 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.7 bits;  conditional E-value: 2.2e-13
                 SEEEEESBTTTBCHH.HHHHH..HHHHHCHHHHHHHHHH...HHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxx.xxxxx..xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   2 ktvvfDkdGTLttge.psved..vivsaalalaaaletg...sehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaaigsaq 94 
                 k + fD  +TL+t++ p +e+  ++ sa         +g   ++  + k++   +k++  ++ ++++     +     ++w+  l        ++    
  CCD26450.1  22 KIITFDAYNTLYTTTlPILEQycLVGSA---------YGihaNPSELSKNFPQIFKDLATKYPNYGK-----TSGLAPEQWWGYL-------IKNIFKP 99 
                 789*********9996666664323333.........33457999**********************.....*************.......7888888 PP

                 HHCHHHHHHTTHHHHHHHHHHTHHBHTTHHHHHHHHHHT..TEEEEEEESSEHHHHHHHHHHTT.GGGE.SEEEEHHCESSTTTSHHHHHHHHHHHT.. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx.xxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx.. RF
   Hydrolase  95 sqgrtvallqaralavftiadplkvkpeaaeavasLkaa..gievvlltgdnpetaeraanqlG.ddyf.daviasdietvakpspegkvaaireLq.. 187
                 ++  +++++  ++l  f+ ++ + + p++ e+++++k++  ++ ++++++ +p   + ++++lG  +yf d v+ s++++++kp+ e ++ +++ +   
  CCD26450.1 100 TDIPIEMVN--EILLRFEGSQAYAIHPDLLELLKYIKEMhpNVVMGIISNTDPIIFK-VLENLGiLKYFkDYVYLSYDTGIKKPNVEVFNFVLKDIVkt 195
                 999999999..****************************555556667766665555.*******99999**************************446 PP

                 ..........STGGGEEEEESSHH.HHHHHHHTT CS
                 ..........xxxxxxxxxxxxxx.xxxxxxxxx RF
   Hydrolase 188 ..........gkpeevamVGDgvn.DaaalaaAg 210
                             ++++ ++GD +  D+ a++ Ag
  CCD26450.1 196 npslnkgdlsNLKRQCWHIGDELHnDMMAAKDAG 229
                 677777665433889********99*******98 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   5.8e-11   3.5e-07       3      49 ..     178     236 ..     176     250 .. 0.87

  Alignments for each domain:
  == domain 1  score: 30.2 bits;  conditional E-value: 5.8e-11
                     STTSSHHHHHHHHHH............---GGGEEEEES-TTTHHHHHHHCT-EEEEES CS
  Hydrolase_like   3 gKPepemydfalevl............gsdpeevlmiGDrlatDiagAnnaGwksvLVl 49 
                      KP+ e++ f l+++            +  +++++ iGD l+ D+ +A++aGw++vL+ 
      CCD26450.1 178 KKPNVEVFNFVLKDIvktnpslnkgdlSNLKRQCWHIGDELHNDMMAAKDAGWNGVLID 236
                     7**************88777666665544499************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       497  (0.0277205); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2260.15
//
Query:       CCD26451.1  [L=1444]
Description: hypothetical protein NDAI_0H02770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       737  (0.0411066); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.30s 00:00:01.09 Elapsed: 00:00:00.47
# Mc/sec: 9314.76
//
Query:       CCD26452.1  [L=413]
Description: hypothetical protein NDAI_0H02780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.9e-59  200.3   0.3    3.2e-59  199.6   0.3    1.4  1  MOZ_SAS          MOZ/SAS family
    4.7e-09   35.7   3.6    8.7e-07   28.5   1.6    2.6  2  zf-MYST          MYST family zinc finger domain
  ------ inclusion threshold ------
      0.026   14.9   0.0      0.054   13.9   0.0    1.5  1  Acetyltransf_7   Acetyltransferase (GNAT) domain
      0.038   13.9   5.6       0.15   12.0   2.7    2.4  2  TLP-20           Nucleopolyhedrovirus telokin-like protein-20
       0.18   12.4   5.4       0.31   11.6   5.4    1.4  1  Ribosomal_60s    60s Acidic ribosomal protein
        2.6    7.4   8.9        3.8    6.8   8.9    1.2  1  DUF4746          Domain of unknown function (DUF4746)
        4.1    7.2   7.3        7.6    6.3   7.3    1.4  1  Myc_N            Myc amino-terminal region


Domain annotation for each model (and alignments):
>> MOZ_SAS  MOZ/SAS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.6   0.3   1.3e-62   3.2e-59       1     177 [.     205     384 ..     205     386 .. 0.96

  Alignments for each domain:
  == domain 1  score: 199.6 bits;  conditional E-value: 1.3e-62
     MOZ_SAS   1 ppGkeiYrkeklsvfevdGekeklycqnLcllaklFldhktlyydvepFlfYvlteadeegahivGyFskekesaeeynlaCilvlPpyqrkgyGklli 99 
                 ppG+  Y+++k+++ +v+G k+kl+cq+Lcl++klFld+k++y++v+++ fY+l+e+ +++ + +G+Fsk+  s +++nlaCilv+Ppyqr+++G+lli
  CCD26452.1 205 PPGRIKYKSTKYTIRRVKGYKHKLFCQCLCLFTKLFLDNKSMYFKVDHYDFYILYETGTSTPNPMGFFSKDLISYNRNNLACILVFPPYQRRKLGSLLI 303
                 89************************************************************************************************* PP

     MOZ_SAS 100 efsYeLskrekkigtPekPlsdlgllsyrsywkeeilellkek...ekkkisieeisektgikeeDiistleelkllkyak 177
                 efsY+Lsk ++ +++Pe Pls +gl+ y +yw++ i+  l e    + + +++e+is+ tg++ +Dii tl++l ++ +++
  CCD26452.1 304 EFSYKLSKFDNITSGPELPLSPFGLIGYLKYWSQIICWELIEGqlaNFDGVTLENISTVTGLRINDIIMTLKHLGCIGENN 384
                 **********************************9998777765777889*************************997765 PP

>> zf-MYST  MYST family zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0024       6.2       2      20 ..      77      96 ..      76     102 .. 0.92
   2 !   28.5   1.6   3.4e-10   8.7e-07      30      55 .]     174     199 ..     170     199 .. 0.96

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.0024
     zf-MYST  2 kniekieiG.eyeiktWYfS 20
                +ni+++++G + ++ tWY S
  CCD26452.1 77 RNIKQVQFGlDKRFPTWYGS 96
                9********8899*****98 PP

  == domain 2  score: 28.5 bits;  conditional E-value: 3.4e-10
     zf-MYST  30 ekLyvCefClkYmksakelerHkkkC 55 
                 ++Ly+Ce+C+kY++++++l  H+ kC
  CCD26452.1 174 DTLYICEYCFKYTSDSDSLALHTLKC 199
                 79************************ PP

>> Acetyltransf_7  Acetyltransferase (GNAT) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.0   2.1e-05     0.054      16      49 ..     270     308 ..     251     334 .. 0.65

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 2.1e-05
                     EEEEEEEES...TCTEEEEE-GGGTTSSHHHHHHHH..T CS
  Acetyltransf_7  16 Gfialslld...aeitrlaVdpeyrgkGiGraLlea..a 49 
                     Gf +  l++    ++ ++ V p y+++ +G+ L+e+  +
      CCD26452.1 270 GFFSKDLISynrNNLACILVFPPYQRRKLGSLLIEFsyK 308
                     4443333333334455599****************8431 PP

>> TLP-20  Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.7   5.7e-05      0.15      78     139 ..       3      68 ..       1     134 [. 0.73
   2 ?    2.3   0.0     0.052   1.3e+02      21      36 ..     395     410 ..     380     411 .. 0.62

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 5.7e-05
      TLP-20  78 ensnklnviLfnikptvlkkgsviFkivytnkksansklflsapv.....eksssededdeddeded 139
                 +n+++ n i+   k t+ +k+  i  i  +  +++n++l++++ +     + +++e+e++e++eded
  CCD26452.1   3 MNQQQTNTIISKKKTTKTTKKRKINAINAKT-SNNNNNLNADTDIdaaayDVEEEEEEEEEEEEDED 68 
                 578999*********************9999.66677777777664443422222222222222222 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.052
      TLP-20  21 edenvLsFivedEyhL 36 
                  + + +sF++edEy L
  CCD26452.1 395 LKAHEISFMIEDEYLL 410
                 3567788888888876 PP

>> Ribosomal_60s  60s Acidic ribosomal protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   5.4   0.00012      0.31      62      82 ..      48      68 ..      18      73 .. 0.71

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00012
                   XXXXXXXXXXXXXX.XX--SS CS
  Ribosomal_60s 62 aaaaaeekkkeeeeeEeeddd 82
                   aaa + e+++eeeeeEeed+d
     CCD26452.1 48 AAAYDVEEEEEEEEEEEEDED 68
                   444444444444444566665 PP

>> DUF4746  Domain of unknown function (DUF4746)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.9    0.0015       3.8      66     128 ..       4      67 ..       1      88 [. 0.61

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0015
     DUF4746  66 eveeeee.lveevsseeetlekqekekektkakeaeltadepaeeeeaeeeeeeeaveeeeeee 128
                 ++++ ++ + +++++++++++k++  ++kt++++++l+ad++ ++ + ++eeeee+ eeeee+e
  CCD26452.1   4 NQQQTNTiISKKKTTKTTKKRKINAINAKTSNNNNNLNADTDIDAAAYDVEEEEEEEEEEEEDE 67 
                 3344433034445555566667777777778788888887766666666666666655553333 PP

>> Myc_N  Myc amino-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   7.3     0.003       7.6     200     253 ..      13      64 ..       1      78 [. 0.33

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.003
       Myc_N 200 saalaldppasssssasaassssssdskalssseedvlsesdeeeeee.eeeeee 253
                 s++++   ++++++++ +a + ++s++++  + ++d      + eeee eeeeee
  CCD26452.1  13 SKKKT---TKTTKKRKINAINAKTSNNNNNLNADTDIDAAAYDVEEEEeEEEEEE 64 
                 22222...22222222222222222222222222222222222222220222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2116  (0.118021); expected 358.6 (0.02)
Passed bias filter:                      882  (0.049194); expected 358.6 (0.02)
Passed Vit filter:                       157  (0.00875676); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 2726.05
//
Query:       CCD26453.1  [L=389]
Description: hypothetical protein NDAI_0H02790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
        2.5    6.7  11.9        3.1    6.4  11.3    1.3  1  TT_ORF1     TT viral orf 1


Domain annotation for each model (and alignments):
>> TT_ORF1  TT viral orf 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4  11.3   0.00017       3.1     236     332 ..     202     297 ..     191     325 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.00017
     TT_ORF1 236 asaadlrypflspqte...npcitfqvlnekfYnkalsisseekkekkeklleklykttlyqtfktekqlkkktknkkkkknkketeskkkakdskyge 331
                  +++dl   f  +++e      ++f+ l+   +++ l+   +++++++++  ++l+++++y++ kt++  +++++n+++++n+       +++d++y+e
  CCD26453.1 202 YTFIDLYESFQFSNKEiarDDFVQFVNLSL-YFHDILMG--NDTSKQQKQTNKNLWNESFYHEEKTPAAQTNNNDNNNNNQNSLPHIII-NNNDKDYNE 296
                 566666555543333211155677777777.66777777..77888888999***************9999888888887765433222.224444444 PP

     TT_ORF1 332 k 332
                 +
  CCD26453.1 297 P 297
                 3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1236  (0.0689386); expected 358.6 (0.02)
Passed bias filter:                      605  (0.0337442); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.28s 00:00:00.82 Elapsed: 00:00:00.44
# Mc/sec: 2670.52
//
Query:       CCD26454.1  [L=868]
Description: hypothetical protein NDAI_0H02800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-55  188.2   1.5    3.8e-55  186.6   0.7    2.3  2  MIF4G_like    MIF4G like
    1.1e-53  182.4   2.6    2.2e-51  174.9   2.6    3.0  1  MIF4G_like_2  MIF4G like
    8.8e-14   51.6   6.4    8.8e-14   51.6   6.4    2.7  3  MIF4G         MIF4G domain


Domain annotation for each model (and alignments):
>> MIF4G_like  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.6   0.7   6.3e-59   3.8e-55       3     191 .]     348     543 ..     346     543 .. 0.94
   2 ?   -1.9   0.0      0.41   2.5e+03      59     107 ..     728     777 ..     702     780 .. 0.77

  Alignments for each domain:
  == domain 1  score: 186.6 bits;  conditional E-value: 6.3e-59
  MIF4G_like   3 asslaavllrdilvdvinllevnrkeaakllldldlyltkktfalratsvdkl...kdldppestwkledvvveavlsellqlptpekklvyyhsllte 98 
                 ++++a+ l+ di++d+++ le+nrke+ak++++ldl++++  fa+ ++s ++l   ++ +p++st+k+ed+++e++ls +++lp+ ++  +y+ +ll++
  CCD26454.1 348 ITTYAGQLFNDIIIDIVESLEFNRKEVAKQVVTLDLFYKPGIFAEAGSSIADLiqsHEENPSNSTYKIEDLAIETILSLIFKLPNVSQPFAYFYTLLVD 446
                 57899************************************************9988899*************************************** PP

  MIF4G_like  99 icklaPkavaPslGrairllyaalssldvelierfldWfshhlsnfgftWkWkeWved.velp..alhPrkvfikrviekeirl.syadriketlPd 191
                 ic+ +Pka+aP++Gra r++y++l++ld el  r+ldWfs+ +snf+f+WkWkeW +d ++++  a +P+  fik++i+keirl s    ++++lP+
  CCD26454.1 447 ICQDSPKAIAPVFGRAFRFFYNNLDDLDFELKLRYLDWFSIQMSNFNFSWKWKEWENDsIKFNgiAYNPKVNFIKNLIHKEIRLtSNLVEVEDSLPE 543
                 *******************************************************9874566633679***************94456789999996 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.41
  MIF4G_like  59 dppestwkledvvveavlsellq.lptpekklvyyhsllteicklaPkav 107
                 + +  +  +e+ ++ea++ +l q l + ++ ++ ++ ++  +c +   ++
  CCD26454.1 728 NDGINHGLIESTAIEAIFRNLSQeLISNPQSVADFEIVFEKLCIIVNGTI 777
                 55555556789999999999976366777888889999999999877665 PP

>> MIF4G_like_2  MIF4G like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.9   2.6   3.7e-55   2.2e-51       3     267 .]     584     835 ..     582     835 .. 0.96

  Alignments for each domain:
  == domain 1  score: 174.9 bits;  conditional E-value: 3.7e-55
  MIF4G_like_2   3 yedeslPfaaeaqelldlirkkapaeevlelldeikesaeeegsieadpdslsidvfvqtllhvGskSlSHvlsaierykevLkel.....aeseea 94 
                   ++ +s P++a+++++ld+i+k ++++e+++l ++i++ +ee+g++++d+++++i v++q+++h+Gs+SlSH++++i+++ ++L+e+     ++++ +
    CCD26454.1 584 FKLDSVPMEAQVRQILDYIHKPNNQRELKDLEEIINTIKEEYGNEITDFTRFVIIVIMQAVVHSGSRSLSHANKYINDLRDELLEIfskleMDQDLK 680
                   899***********************************************************************************66555555*** PP

  MIF4G_like_2  95 raqileavmrfWknnpqmaiiivdkLlnyqivepasVvewifs.....keknegltrayvwEllkrtlskvnkrvkkvrqeleelkkkeeeekakee 186
                   +++++eav+r+W+ n+q++++ivd+L+ +++v+ +s+++++f+     +  n+gl +++++E ++r+ls+   +                       
    CCD26454.1 681 EYTMIEAVLRYWNTNSQNGFLIVDALKFAKLVSTKSIYDFCFDesnlnDGINHGLIESTAIEAIFRNLSQELIS----------------------- 754
                   *******************************************88776556*********************99....................... PP

  MIF4G_like_2 187 edkeeeeeleraeekleaaqkeqkelflivferlveilsesleeletsgseentevie....................ewkkwwikrllkvflrkya 263
                                      + ++ + f+ivfe+l+ i+++++++l+++++e++ +v++                    +wk++++ +++k++lrky+
    CCD26454.1 755 -------------------NPQSVADFEIVFEKLCIIVNGTIKDLGVQEDEDI-VVPNvssdmdidftdvnesrrfnlSWKYATVTSFIKSLLRKYS 831
                   ...................7899****************************99.78889************************************** PP

  MIF4G_like_2 264 veek 267
                   +e++
    CCD26454.1 832 DEYR 835
                   *985 PP

>> MIF4G  MIF4G domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   6.4   1.5e-17   8.8e-14       8     191 ..      43     243 ..      36     270 .. 0.87
   2 ?   -2.3   0.1      0.46   2.8e+03      32      63 ..     417     448 ..     395     453 .. 0.64
   3 ?   -1.7   0.1      0.31   1.8e+03       4      42 ..     595     633 ..     592     675 .. 0.59

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 1.5e-17
                 HHCHT..TTTHHHHHHHHHHHHHCS...CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHC....-S-HHHHHHH CS
       MIF4G   8 lnkls..kenfevlikqllklamdd...dknelkevielifekaveepsfsplyarlcgklnsrfqqnFrikllnklqeefekry....eleneleene 97 
                 ++ ++   + fe+ ik l+++++++   ++  +  +++++++++ve+p++  ++a l++ +n++++   +++++n ++e++++++    +++++  +ne
  CCD26454.1  43 ICTIGesLKAFEDDIKFLSEAIINEyghEDYFNEALLKTLYSVVVEQPQKQAAIALLTMVVNAENN-VAGKSIINFFFEQLQHNCkesiNDDFQVTSNE 140
                 55555557789****************988************************************.******************************** PP

                 HHHHHHHHHHHHHHHHHHHTTSSEHHHHHHHHHHHHHGGCCCCSC.CHSCHHHHHHHHHHHHHHHHHHHC...CCHHHHHHHHHHHHHHHHHHHCCH.. CS
       MIF4G  98 dgnrrrrlglvrflgelfklkmltskilldclkellssltketad.dppqdleeieilltllttigktle...nnekakkeldqffkriqkiledat.. 190
                  g +++++ ++r+l++l  + + +   ++ ++k+l++   + +++  +++ + +  i+++ l +i  ++    ++e++ ++++++++++++++++++  
  CCD26454.1 141 TGPWNKVKLILRYLSMLSPIMIKD--DIIAIYKRLFELAVELNNKeETKRVPLSEAIYVNTLLNIPALFVfnkTDESLQQKVEELITYVETNYKIKQin 237
                 *******************97644..59999999999999988889***********************977777777788888888888888876565 PP

                 .....C CS
       MIF4G 191 .....r 191
                      +
  CCD26454.1 238 vdllrE 243
                 555552 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.46
                 HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH CS
       MIF4G  32 knelkevielifekaveepsfsplyarlcgkl 63 
                 + ++ ++++lif+ ++ +  f+  y+ l+  +
  CCD26454.1 417 DLAIETILSLIFKLPNVSQPFAYFYTLLVDIC 448
                 34667777777777777777777777666555 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 0.31
                 HHHHHHCHTTTTHHHHHHHHHHHHHCSCHHHHHHHHHHH CS
       MIF4G   4 vkgilnklskenfevlikqllklamdddknelkevieli 42 
                 v+ il  + k n +  +k+l +++++ ++++ +e+++ +
  CCD26454.1 595 VRQILDYIHKPNNQRELKDLEEIINTIKEEYGNEITDFT 633
                 666666677777777777777777666555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       838  (0.0467399); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.26s 00:00:00.95 Elapsed: 00:00:00.42
# Mc/sec: 6152.78
//
Query:       CCD26455.1  [L=1153]
Description: hypothetical protein NDAI_0H02810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1153 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4786  (0.266942); expected 358.6 (0.02)
Passed bias filter:                      743  (0.0414412); expected 358.6 (0.02)
Passed Vit filter:                       350  (0.0195214); expected 17.9 (0.001)
Passed Fwd filter:                       116  (0.00646996); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.49u 0.37s 00:00:02.86 Elapsed: 00:00:00.69
# Mc/sec: 5059.13
//
Query:       CCD26456.1  [L=150]
Description: hypothetical protein NDAI_0H02820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.23s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1132.64
//
Query:       CCD26457.1  [L=128]
Description: hypothetical protein NDAI_0H02830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-30  105.2  11.1    1.8e-30  104.8  11.1    1.1  1  Pkr1            ER protein Pkr1
  ------ inclusion threshold ------
      0.035   14.1   0.1      0.041   13.9   0.1    1.1  1  Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis 
      0.045   13.1   0.8      0.059   12.7   0.8    1.1  1  DUF4191         Domain of unknown function (DUF4191)
      0.055   13.4   1.9       0.15   11.9   1.9    1.8  1  Kei1            Inositolphosphorylceramide synthase subunit K
      0.085   13.8   1.8       0.19   12.7   1.8    1.7  1  DUF4834         Domain of unknown function (DUF4834)


Domain annotation for each model (and alignments):
>> Pkr1  ER protein Pkr1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8  11.1   5.1e-34   1.8e-30       2      72 ..       3      74 ..       2      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 104.8 bits;  conditional E-value: 5.1e-34
        Pkr1  2 sffeelwesIftpgvtptlliatnvsFaaLllvllaLlvats.niHfivLlllalgLwasinWFvaeLkkak 72
                +ffe+lw+sIf+pg+tp+l+iat+vsF+aL+++l++L++at+ niHf++Ll++a+ Lw+ ++WF++eL+++k
  CCD26457.1  3 AFFEALWQSIFEPGTTPQLIIATHVSFIALFCTLIWLIYATKgNIHFCILLAIAFTLWIIVIWFIRELENVK 74
                69*******************************************************************987 PP

>> Halogen_Hydrol  5-bromo-4-chloroindolyl phosphate hydrolysis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.1   1.1e-05     0.041       6      46 ..      29      82 ..      23     126 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 1.1e-05
  Halogen_Hydrol  6 lsiliavivalvsffllgfsfflalliailggilvyvasr.............k 46
                    +++l+ ++++l+ ++  +++f + l+ia+  +i+v++++r              
      CCD26457.1 29 FIALFCTLIWLIYATKGNIHFCILLAIAFTLWIIVIWFIRelenvklksneelG 82
                    677888999*******************************66444433332220 PP

>> DUF4191  Domain of unknown function (DUF4191)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.8   1.7e-05     0.059      23      81 ..      19      78 ..       9      83 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.7e-05
     DUF4191 23 kkllwlllaaflvvvvvfvvlglll.gslilllilgillgllvalivltrraekaayaqi 81
                ++l+ ++ + f++ +  +++l +++ g++ ++++l+i++ l + +i++ r +e++  ++ 
  CCD26457.1 19 PQLIIATHVSFIALFCTLIWLIYATkGNIHFCILLAIAFTLWIIVIWFIRELENVKLKSN 78
                444445555555555555555555534699999********************9988765 PP

>> Kei1  Inositolphosphorylceramide synthase subunit Kei1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.9   4.2e-05      0.15      84     152 ..      52     121 ..       2     128 .] 0.68

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.2e-05
        Kei1  84 vistaytvlFavdWflvleehdaaaaasta...gsasaeatagatapaavssaasatsasvsaatssslasa 152
                 ++ +a+t++  v Wf+ + e+ + +++++    + +  e+ ++ t+++ +s  +s+t++s++++++ +++++
  CCD26457.1  52 LLAIAFTLWIIVIWFIRELENVKLKSNEELgipK-ELSEKGKDSTKKK-ESVVESKTAKSATTSARPKSTNN 121
                 6899*************88887777765557852.3333333333333.23333333333333333333332 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.8   5.4e-05      0.19       7      80 ..      47     125 ..      24     128 .] 0.61

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5.4e-05
     DUF4834   7 i.lifiiailviglsilsvilrtv........fglgsrkkss....ksaqkqfgnstnsnqqksqsrsetkeegeiieeersekeak 80 
                 i + +++ai++   +i+ + +r++                 +    k+ +++++ st+++++  +s++++++++++  ++++++ ++
  CCD26457.1  47 IhFCILLAIAFTLWIIVIWFIRELenvklksnE--------ElgipKELSEKGKDSTKKKESVVESKTAKSATTSARPKSTNNTTRS 125
                 668888999999999999999999333333330........2444444444444444444444444444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1834  (0.102292); expected 358.6 (0.02)
Passed bias filter:                      714  (0.0398237); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 927.42
//
Query:       CCD26458.1  [L=84]
Description: hypothetical protein NDAI_0H02840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1057  (0.0589548); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 616.11
//
Query:       CCD26459.1  [L=207]
Description: hypothetical protein NDAI_0H02850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-33  115.7   0.1    2.5e-33  115.0   0.1    1.4  1  NFACT-R_1  NFACT protein RNA binding domain
  ------ inclusion threshold ------
       0.21   11.5   5.1       0.96    9.4   5.1    2.0  1  NFACT-C    NFACT protein C-terminal domain


Domain annotation for each model (and alignments):
>> NFACT-R_1  NFACT protein RNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   0.1   2.8e-37   2.5e-33       1     108 [.       1     116 [.       1     117 [. 0.91

  Alignments for each domain:
  == domain 1  score: 115.0 bits;  conditional E-value: 2.8e-37
   NFACT-R_1   1 kvfwFk.....ssdg..ylvimGkDkqeneelikkyleesd.vwfhvdkessahvylrlsege..leeipeelleeaaqlakanSiagnklssvdvvyv 89 
                 +v++++        +  +++++GkDk+en+ lik++++e + +wfh+dk ss h+yl+l+e+e  l+++p+e+++++ ql+k++Si+gnkl+++ +vy+
  CCD26459.1   1 MVYFYTsqpteY--SapHTLVAGKDKFENDVLIKYGYRELNyMWFHADKYSSGHIYLQLNETEkdLNDVPNEVVNDCLQLCKSESIQGNKLNQCLIVYT 97 
                 888888555333..156*******************999888****************999885666******************************** PP

   NFACT-R_1  90 pasnlsktapldtGsvgfk 108
                 p++nl+k++ +++G+v+fk
  CCD26459.1  98 PWHNLRKNKYMKPGEVSFK 116
                 ******************8 PP

>> NFACT-C  NFACT protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.1   0.00011      0.96       7      64 ..      75     156 ..      69     206 .. 0.66

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.00011
     NFACT-C   7 lldsLvgtplpeDeileaipvcAPyaaLqkykYkvKlqPGsv..KkGkavkeilekflk..........................k 64 
                 +l+   ++  +++++ + + v  P++ L+k kY   ++PG+v  K  k vk  le f +                          k
  CCD26459.1  75 CLQLCKSESIQGNKLNQCLIVYTPWHNLRKNKY---MKPGEVsfKSMKVVK-KLECFSRdnkalnrlmktrveiidgveellyqaK 156
                 55666677889999*******************...89*986325556655.5788888444444444444444444444444330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2363  (0.131798); expected 358.6 (0.02)
Passed bias filter:                      676  (0.0377043); expected 358.6 (0.02)
Passed Vit filter:                        61  (0.00340231); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.22s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 1583.09
//
Query:       CCD26460.1  [L=392]
Description: hypothetical protein NDAI_0H02860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-08   32.4   9.8    1.4e-07   30.8   9.8    2.0  1  Meiotic_rec114  Meiotic recombination protein rec114
  ------ inclusion threshold ------
        0.1   12.5   3.4       0.18   11.7   3.4    1.3  1  DUF1917         Domain of unknown function (DUF1917)


Domain annotation for each model (and alignments):
>> Meiotic_rec114  Meiotic recombination protein rec114
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   9.8   1.6e-11   1.4e-07       2     191 ..      10     227 ..       9     351 .. 0.75

  Alignments for each domain:
  == domain 1  score: 30.8 bits;  conditional E-value: 1.6e-11
  Meiotic_rec114   2 niypiakysvaedsytldsssid.WshysdggftlsltsgLlqirq...............reeLiqsinLldswh.qliPgtkeksLvlls.ka 78 
                     +++  +  ++ +++    +  +d W+h s+++  l lt  Ll+                    + + +  +l+     + P++   +++++s k+
      CCD26460.1  10 SKFEEPILAPLGFQTKQKPLPLDkWKHHSQTSPELPLTFQLLHFNPningishsivsfrviSGDPVGNFTILEEVCsPIAPLS--SQIIQFSaKS 102
                     56666777888888889998888899999999999999999998888888998888888886666777777665440455665..469******* PP

  Meiotic_rec114  79 Piinirvisnn.....llkrfqvklPsDveymkakvelenLglvlkdarsss...ekkqls.nsqsqsnnsqelvllneavnkssatqPnislqa 164
                     P ++++++sn+      l+rfq+ l  Dv + +    l  +++v+k+ r s    +++++   +   +n s+  + + +  ++ s+     ++q+
      CCD26460.1 103 PTLSCKYLSNEtngvvYLRRFQISLEKDVDFARICSILISMQFVMKNGRLSNtalDRSRMIgIANNPINYSNPNIEIRNHNKNDSFP---QEIQT 194
                     ***********99*9889*****************************9977611144444313334444444444455555554432...23444 PP

  Meiotic_rec114 165 qsiimsqt......sseesttesnnatniaaha 191
                     q+++ sq         + ++ +   ++++a ++
      CCD26460.1 195 QNLLNSQMfpfsqlEMQPTQALDYSQSQFAFNT 227
                     444444443333323333333333444444333 PP

>> DUF1917  Domain of unknown function (DUF1917)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   3.4     2e-05      0.18      83     153 ..     296     368 ..     291     391 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2e-05
     DUF1917  83 asekgpWiyianpa.edeapeeegsdlaklvee.gtelLqeleekkqelekenakkkkkskaalkrelnkerk 153
                  +++ ++i i++++ + +++eee++d +++ +    e+Lq+++ k  ++eke++kk++ksk+ +++++ ke+ 
  CCD26460.1 296 NNPDKNYISISEEIeKGKEEEEEKEDNNNISNLpTIEMLQKVKRKVGKIEKETSKKEHKSKYKISKKIIKEKL 368
                 5677889999999655566666666666666642679******************************999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1806  (0.100731); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2953.72
//
Query:       CCD26461.1  [L=249]
Description: hypothetical protein NDAI_0H02870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       612  (0.0341346); expected 358.6 (0.02)
Passed bias filter:                      403  (0.0224776); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1842.37
//
Query:       CCD26462.1  [L=498]
Description: hypothetical protein NDAI_0H02880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.9e-24   84.1  10.0    8.9e-24   84.1  10.0    2.8  3  CLTH        CTLH/CRA C-terminal to LisH motif domain
     0.0059   17.0   0.3      0.031   14.7   0.3    2.3  1  NOP5NT      NOP5NT (NUC127) domain
  ------ inclusion threshold ------
        4.3    6.0   9.8         11    4.7   9.8    1.7  1  ALMT        Aluminium activated malate transporter


Domain annotation for each model (and alignments):
>> CLTH  CTLH/CRA C-terminal to LisH motif domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.1   6.4e+03      34      64 ..      85     127 ..      75     129 .. 0.53
   2 !   84.1  10.0   1.5e-27   8.9e-24       1     135 [.     132     305 ..     132     314 .. 0.81
   3 ?    1.2   0.1      0.05     3e+02     124     147 ..     463     486 ..     426     487 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.1
        CLTH  34 snsnLe.FkLkllqfielirgkt............kdieealey 64 
                 +n ++   kL+l  fi+l   ++            k+ ++a+e+
  CCD26462.1  85 KNREISmSKLLLNYFISLAY-EEssirmakelgfvKNNKDAIEF 127
                 45555546777777777777.33233333333333445555555 PP

  == domain 2  score: 84.1 bits;  conditional E-value: 1.5e-27
        CLTH   1 sikerqkIiklilegdlseaiewine........nkpellesn..........snLeFkLkllqfielirg..................ktkdieeale 63 
                 +i+er++I kli+ g++ +ai+ i          n       +          ++L+F+L+ll++ie+ir+                  + ++i+++++
  CCD26462.1 132 KITERHRIMKLIKLGQILKAINLITSvfgisileN-------SteqqqegndgDDLHFNLLLLNLIEMIRSnhqskksaaaadddddanN-DFILKLIQ 222
                 699*********************99555554332.......24444455667*****************86655555555444444422.88****** PP

        CLTH  64 yarenle...fendehlkelekamsLLafsdpes......kelssplknlldpsrrekvakefnsailkll..glskespLei 135
                 y++enl+   + n+ h+++le +++LL+f+++++      k+l+ plknl++ s+r+k+a+++n+++l+ +  + s++++   
  CCD26462.1 223 YSKENLAikaSTNKYHMEQLELVITLLLFPNDDEsneifsKKLPRPLKNLYSLSLRSKIANLLNKKLLNCIhsNVSNQNKFPD 305
                 *****9646644448****************999**********************************999878888877655 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.05
        CLTH 124 llglskespLeillsaglsalktl 147
                 +++ls e+ L +l+++ +++ ++l
  CCD26462.1 463 SYSLSYEPNLIQLIKLWAWCENQL 486
                 688999*************99876 PP

>> NOP5NT  NOP5NT (NUC127) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.3   5.2e-06     0.031      15      54 ..     284     320 ..     275     329 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 5.2e-06
      NOP5NT  15 vkdkkllkkddlvkdsvsdlekfsklvkLkaFqkFesaae 54 
                 + +kkll+    +  +vs+ +kf +l++Lk+F  F +aa+
  CCD26462.1 284 LLNKKLLNC---IHSNVSNQNKFPDLLNLKQFNEFGNAAN 320
                 345566766...8888*********************997 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   9.8    0.0019        11     339     432 ..     326     419 ..     266     445 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0019
        ALMT 339 eLqskldskskLlvnsekweaakkkekaeeveekkeeekeseskkeeaeaveeaeseseksllkeskrslklskkesapaeesleekqlskeee 432
                 + +  ld+   L+++s++ +++++k+++++++++ +e++++e++ e +e+++  e+++e++ + +s+ s ++ +++  p + sl++++ls  e 
  CCD26462.1 326 QNKILLDEDNDLITQSKNTRMKNSKKNSHRHHQHDHEDRNDEAEIEIEEEEKDDETKKENTDTVNSSISGNIIESNDFPRQSSLTSNKLSDFEI 419
                 2334459999********9999999999999999999999988888888888888888887788888888888888888888777777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2367  (0.132021); expected 358.6 (0.02)
Passed bias filter:                      490  (0.02733); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.44
# Mc/sec: 3424.88
//
Query:       CCD26463.1  [L=913]
Description: hypothetical protein NDAI_0H02900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      4e-16   58.3   3.3    8.9e-16   57.2   3.3    1.7  1  GATA      GATA zinc finger


Domain annotation for each model (and alignments):
>> GATA  GATA zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   3.3     5e-20   8.9e-16       1      32 [.     828     859 ..     828     863 .. 0.97

  Alignments for each domain:
  == domain 1  score: 57.2 bits;  conditional E-value: 5e-20
        GATA   1 CsnCgttkTplWRrgpdgnksLCnaCGlyykk 32 
                 C +Cg ++Tp+WRrgp gn++LCnaCGl+y+k
  CCD26463.1 828 CKHCGDKDTPEWRRGPYGNRTLCNACGLFYRK 859
                 *******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1885  (0.105137); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.29s 00:00:01.27 Elapsed: 00:00:00.46
# Mc/sec: 5975.27
//
Query:       CCD26464.1  [L=754]
Description: hypothetical protein NDAI_0H02910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.7e-23   82.9   0.1    1.7e-23   82.9   0.1    3.0  3  DRMBL          DNA repair metallo-beta-lactamase
    5.3e-05   22.8   0.0    9.6e-05   22.0   0.0    1.3  1  Lactamase_B_2  Beta-lactamase superfamily domain


Domain annotation for each model (and alignments):
>> DRMBL  DNA repair metallo-beta-lactamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.2      0.33     3e+03      26      63 ..     236     276 ..     219     320 .. 0.67
   2 ?   -1.7   0.2      0.35   3.2e+03      14      44 ..     421     452 ..     413     512 .. 0.58
   3 !   82.9   0.1   1.9e-27   1.7e-23       9     109 ..     569     701 ..     562     702 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.33
       DRMBL  26 keklekylkalkekfdsvlafrPtG...Wtkkekkkkdlek 63 
                 +++l+k+ k+ k++ ++ +   P++   ++ k+++++++++
  CCD26464.1 236 EKHLSKMEKQKKRQKKKKITRSPSTstlFSPKKPSNNTTDT 276
                 45566666666666666666667665555555554444443 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.35
       DRMBL  14 aqihlvslkkle.keklekylkalkekfdsvl 44 
                 +  h+++ ++ + ++++ + l+++ +kfd v+
  CCD26464.1 421 TTRHILHTGDFRcNNEMISKLQKQFKKFDAVY 452
                 55566666655553333333333333555554 PP

  == domain 3  score: 82.9 bits;  conditional E-value: 1.9e-27
       DRMBL   9 tdpseaqihlvslkkle.keklekylkalkek...fdsvlafrPtGWtkkekkkkdlekikess............................ksrekis 75 
                 t p  ++ihlvsl+ l+ +e++++ylk+l+ k   +d +++f PtGWt+++++kk     +                               k+ +k++
  CCD26464.1 569 TTPHDSNIHLVSLSTLRsNESISSYLKNLNIKessYDDIIGFVPTGWTFNNRYKKLEFPLDTIDdrldfllkekdilnssddfemdwikrqyKPFNKFQ 667
                 55789************8899******99877778*****************988655444433778************************99****** PP

       DRMBL  76 iyrvpYSeHSSfrELkefvkslkpkkiiptVnvg 109
                 i+++pYSeHSSf+EL++f + +++ k+++tVn +
  CCD26464.1 668 IFKIPYSEHSSFKELCKFGCLIEWGKMLSTVNLN 701
                 *******************************976 PP

>> Lactamase_B_2  Beta-lactamase superfamily domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.1e-08   9.6e-05      30     170 ..     315     461 ..     306     484 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.0 bits;  conditional E-value: 1.1e-08
                    SEEEEE-SS--HHHHGGGGCCCC.......C--EEEEEEEEHHHHHHCCTTCGHHHCHTTTTEEEEEE-TTSEEEE.....CSTTEEEEEEEE-EE CS
  Lactamase_B_2  30 pidaVllthaHyDHlaglltlre.......lrpkklplyapkgvlavleanfvylaleeepavnvheldwgesfel.....gdggleitatparhk 113
                    +++  +l+h H DH+ gl             ++++ ++y+++ ++  l++   y ++ +e   ++ el+++ ++++     + + +e+ a+ a+h 
     CCD26464.1 315 KLEYYFLSHFHSDHTIGLCKSWFernnlnnSTATSPKIYCSPITSLLLQHV--YGFKLNE---QIAELEINVPMTIfnddlE-ETIEVVAHDANHC 404
                    677779*********997542212456543333335699999999888888..6666666...89***********997743.4577777777777 PP

                    --CTCCE-TTTSEEEEEE....CTTEEEEEESS-S---...HHHHHHHCT-SEEEEE-S-SSTT CS
  Lactamase_B_2 114 sgrrldrnagdtlGlrie....gggkrvyyigDtgyip...eeigerlggadllllditayedd 170
                     g        +++ + i+    +++++++++gD         +++++++++d + ld t++++ 
     CCD26464.1 405 PGS-------LIFIFTIKnvqtQTTRHILHTGDFRCNNemiSKLQKQFKKFDAVYLDTTYLNPL 461
                    777.......99999999999999999*******9666222456699999*********99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1662  (0.092699); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.26s 00:00:00.92 Elapsed: 00:00:00.42
# Mc/sec: 5345.44
//
Query:       CCD26465.1  [L=238]
Description: hypothetical protein NDAI_0H02920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-37  127.9   0.5    7.4e-34  116.7   0.6    3.0  2  Arf          ADP-ribosylation factor family
    4.1e-15   55.8   5.6    1.4e-08   34.4   0.1    2.9  3  G-alpha      G-protein alpha subunit
    1.8e-11   44.3   0.1    1.4e-10   41.4   0.0    2.0  2  Roc          Ras of Complex, Roc, domain of DAPkinase
      7e-07   29.3   0.0      1e-06   28.8   0.0    1.4  1  MMR_HSR1     50S ribosome-binding GTPase
    1.8e-06   27.7   0.0    0.00014   21.6   0.0    2.4  2  Ras          Ras family
    1.4e-05   24.7   0.0     0.0087   15.6   0.0    2.2  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    3.9e-05   23.1   0.0    0.00046   19.6   0.0    2.2  2  Gtr1_RagA    Gtr1/RagA G protein conserved region
     0.0079   16.1   0.1        4.8    7.0   0.0    2.4  2  RsgA_GTPase  RsgA GTPase
       0.01   15.3   0.0      0.018   14.5   0.0    1.5  1  SRPRB        Signal recognition particle receptor beta subuni
  ------ inclusion threshold ------
       0.02   14.4   0.3       0.87    9.1   0.0    2.4  2  FeoB_N       Ferrous iron transport protein B
      0.023   13.9   0.1      0.029   13.5   0.1    1.1  1  DAP3         Mitochondrial ribosomal death-associated protein
      0.094   12.8   0.1       0.17   11.9   0.1    1.4  1  Bd3614-deam  Bd3614-like deaminase
       0.15   11.8   0.0       0.28   11.0   0.0    1.4  1  AAA_29       P-loop containing region of AAA domain


Domain annotation for each model (and alignments):
>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.6   5.4e-37   7.4e-34       2     111 ..       4     125 ..       3     129 .. 0.88
   2 !    5.8   0.0     0.006       8.3     115     172 ..     158     233 ..     151     235 .. 0.72

  Alignments for each domain:
  == domain 1  score: 116.7 bits;  conditional E-value: 5.4e-37
                 HHHHHGGTT.TTEEEEEEEESTTSSHHHHHHHHHHSSCEE............CSSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEE CS
         Arf   2 lsilaklklkkkelrilllGLDnaGKtTilkklkleelvt............tvPTigfnveeleiknlkftvwDvGGqeklRplWknYfektdavifv 88 
                 l+i++k+k+k+ke+++lllGLDn+GK+T++++l+    ++            ++PTigf + +  ik+  +++wD+GGq++lRp+W+nYf+kt+ +i++
  CCD26465.1   4 LTIIKKQKQKDKEVKCLLLGLDNSGKSTLVNRLQISCSNEkqpslevdkmteITPTIGFRIISFPIKDNLISIWDIGGQTSLRPFWNNYFDKTNILIWC 102
                 6899****************************985433222234444444449********************************************** PP

                 EETT-CTTHHHHHHHHHHHCTSG CS
         Arf  89 vDsadreRleeakeeLkalleee 111
                 +D +d +Rl+e+ +eL++ll ++
  CCD26465.1 103 IDISDLNRLHESINELRKLLITK 125
                 ******************99765 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.006
                 TSEEEEEEE-TTSTT......SS-HHHHHHHTTGGGSS............SSSSEEEEEEBTTTTBTHHHHHHHHH CS
         Arf 115 evallvlaNKqDlpe......alseeelrellgleelk............gkrkleiqkcsavkgeglkeglewls 172
                 +++++++ NK Dl +      +  +e++++++ l+ ++            g+ +++ ++csa++g gl    e ls
  CCD26465.1 158 DCKIIIVLNKVDLISrgdcgaTTGQEDIENQVRLRVVSglslsladddgdGSPRVSFVTCSALTGVGLRPLAEELS 233
                 7899*******99651211113446667777777775566677878888888889999999999999988777765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.5   6.1e-08   8.4e-05      12      49 ..       8      42 ..       4      55 .. 0.78
   2 !   34.4   0.1   9.8e-12   1.4e-08     185     244 ..      56     113 ..      44     126 .. 0.86
   3 ?    0.9   0.1      0.14     2e+02     269     282 ..     158     171 ..     151     173 .. 0.85

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 6.1e-08
                XXXXXXXXE..EEEEEEEESTTSSHHHHHHHHHHHCS- CS
     G-alpha 12 kaerkarkkkrevkllllGqseSGKsTilkqlkllykk 49
                k++++   k++evk lllG + SGKsT+++ l++ + +
  CCD26465.1  8 KKQKQ---KDKEVKCLLLGLDNSGKSTLVNRLQISCSN 42
                33333...3557*********************87754 PP

  == domain 2  score: 34.4 bits;  conditional E-value: 9.8e-12
                 -----SEEEEEEECT-TEEEEEEEE-SSHHHHHGTCCCTTTECEEEEEEEGGGTT-B-SS CS
     G-alpha 185 rlktvGisetkfevdsklefrivdvgGqrserkkWvpffddvdaiiFlvslsefdqvlye 244
                  ++t+G+  ++f ++ ++++ i+d+gGq s r+ W+++fd+++++i ++ +s+ +  l e
  CCD26465.1  56 ITPTIGFRIISFPIK-DNLISIWDIGGQTSLRPFWNNYFDKTNILIWCIDISDLNR-LHE 113
                 478***********9.*************************************998.444 PP

  == domain 3  score: 0.9 bits;  conditional E-value: 0.14
                 TSEEEEEEE-HHHH CS
     G-alpha 269 ntpiiLflnKlDil 282
                 +++ii++lnK+D+ 
  CCD26465.1 158 DCKIIIVLNKVDLI 171
                 689*********96 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0     1e-13   1.4e-10       1     105 [.      18     121 ..      18     129 .. 0.87
   2 ?    0.5   0.2      0.48   6.6e+02     108     120 .]     158     170 ..     150     170 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.4 bits;  conditional E-value: 1e-13
                 EEEEESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSGGCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEEGHHHHCHHHHH CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkikgvendkkvkkvklniWDtaGqerfrslhplylreaalailvydsrssenlkeWl 99 
                 K +l+G  ++GK++l++r++ +  s+++++ + vd +t+ + +i     +  +k+  ++iWD++Gq+  r   + y+ + +++i ++d ++ ++l+e +
  CCD26465.1  18 KCLLLGLDNSGKSTLVNRLQISC-SNEKQPSLEVDKMTEITPTIGFRIISFPIKDNLISIWDIGGQTSLRPFWNNYFDKTNILIWCIDISDLNRLHESI 115
                 789****************9655.556678899999998877776555777899999***************************************999 PP

                 HHHHHH CS
         Roc 100 kelkkv 105
                 +el+k 
  CCD26465.1 116 NELRKL 121
                 999875 PP

  == domain 2  score: 0.5 bits;  conditional E-value: 0.48
                 SS-EEEEEE-TTT CS
         Roc 108 kspvilvgnkiDl 120
                 ++++i+v nk+Dl
  CCD26465.1 158 DCKIIIVLNKVDL 170
                 6899*******95 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   7.6e-10     1e-06       2     101 ..      19     119 ..      18     167 .. 0.74

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 7.6e-10
                 EEEEESTTSSHHHHHHHHH....TS...TEEESSSTTSSSSEEEEEEE..ETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCSH CS
    MMR_HSR1   2 vaivGrpNvGKStLinalt....ge...kaivsdkpgtTrdinegrvk..lkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseeklk 91 
                 ++++G  N+GKStL+n+l     +e     +v ++   T +i ++ ++  +k++ i ++D+ G     s  + + +++ +  +++++++++d+s + l+
  CCD26465.1  19 CLLLGLDNSGKSTLVNRLQiscsNEkqpSLEVDKMTEITPTIGFRIISfpIKDNLISIWDIGG-QT--S-LRPFWNNYFD--KTNILIWCIDIS-D-LN 109
                 6899**************5344433344569*****999999999888878899*********.33..1.2245555554..689*******99.3.44 PP

                 HHHHHHHHHH CS
    MMR_HSR1  92 pldeeleell 101
                 +l e+++el+
  CCD26465.1 110 RLHESINELR 119
                 4544444442 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   9.8e-08   0.00014       1      89 [.      18     113 ..      18     132 .. 0.78
   2 ?    3.8   0.0     0.027        38     103     147 ..     157     223 ..     147     234 .. 0.61

  Alignments for each domain:
  == domain 1  score: 21.6 bits;  conditional E-value: 9.8e-08
                 EEEEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET........TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHT CS
         Ras   1 KlvlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd........gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfen 89 
                 K++l+G  + GK++l++r    + ++e+++ + vd++t+ + +          k+  ++iwD  Gq   + + ++y+ +++ ++ + di++ + +++
  CCD26465.1  18 KCLLLGLDNSGKSTLVNRLQI-SCSNEKQPSLEVDKMTEITPTIgfriisfpIKDNLISIWDIGGQTSLRPFWNNYFDKTNILIWCIDISDLNRLHE 113
                 899***************755.566677888889977665444345566665888999*******************************98766554 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.027
                 TTSEEEEEEETTTGGG.............G-SS-HHHHHHHH.........HHHTSEEEEEBTTTTC CS
         Ras 103 envpivLvGnKvDlee.............kravsteegeela.........kelglkfletSAktne 147
                  +++i++v nKvDl +             +++v+ + ++ l+          +  + f+ +SA t  
  CCD26465.1 157 VDCKIIIVLNKVDLISrgdcgattgqediENQVRLRVVSGLSlsladddgdGSPRVSFVTCSALTGV 223
                 46899*********99777777777666633333333322222233443333344666666666655 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0026       3.6       7      36 ..      20      49 ..      15     100 .. 0.76
   2 !   15.6   0.0   6.3e-06    0.0087     119     188 ..     155     232 ..     146     235 .. 0.67

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0026
                EEEESTTSSHHHHHHHHHHHTTSSCHHHHH CS
    GTP_EFTU  7 giighvDhGKtTLtdrLlyktgaiskkgek 36
                 ++g  ++GK+TL+ rL  ++++ ++ + +
  CCD26465.1 20 LLLGLDNSGKSTLVNRLQISCSNEKQPSLE 49
                55666689**********999987775443 PP

  == domain 2  score: 15.6 bits;  conditional E-value: 6.3e-06
                 HHTTTEEEEEEESCGST.......HHHHHHHHHHHHHHHHHH.....HHHHHHHHHTTT....TTEEEEEEBTTTTBTHHHHHHHH CS
    GTP_EFTU 119 lkegvpiivfiNKmDrl.......kaelkeiveevkqklsrk.....eeklekygekge....kevpvvfgSalkgegvktlleal 188
                 ++++++ii+++NK+D +              +e+++++++ +             ++++      v++v +Sal+g g+++l e l
  CCD26465.1 155 IAVDCKIIIVLNKVDLIsrgdcgaT----TGQEDIENQVRLRvvsglS----LSLADDDgdgsPRVSFVTCSALTGVGLRPLAEEL 232
                 677899************9966432....3333444333222333332....3322222344489**************9998876 PP

>> Gtr1_RagA  Gtr1/RagA G protein conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.3e-07   0.00046       1     101 [.      18     121 ..      18     129 .. 0.74
   2 ?    1.0   0.0      0.16   2.2e+02     111     128 ..     158     175 ..     153     209 .. 0.77

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 3.3e-07
   Gtr1_RagA   1 kvLLmGksgsGKtsmrsiiFdnylar........dtlrlgatidveksevrflgnltlnlwDcgGqeafveeylssqkeeifrnvgvliyVfDvesre. 90 
                 k LL+G  +sGK+++ + +    + +         +++++ ti  +  ++ + +nl +++wD+gGq+++         ++ f + ++li+ +D+++ + 
  CCD26465.1  18 KCLLLGLDNSGKSTLVNRLQISCSNEkqpslevdKMTEITPTIGFRIISFPIKDNL-ISIWDIGGQTSLRPF-----WNNYFDKTNILIWCIDISDLNr 110
                 689***********988775444433011111115667778888888899888887.89*******987655.....4789**************7655 PP

   Gtr1_RagA  91 leedletlkei 101
                 l+e++++l+++
  CCD26465.1 111 LHESINELRKL 121
                 77777777765 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.16
   Gtr1_RagA 111 eakvfvlihKmDliqede 128
                 + k+ + ++K+Dli++  
  CCD26465.1 158 DCKIIIVLNKVDLISRGD 175
                 67999*********8644 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0035       4.8     102     122 ..      19      39 ..       6      57 .. 0.76
   2 !    6.7   0.0    0.0046       6.3      46      64 ..     158     178 ..     154     204 .. 0.73

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0035
                  EEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpe 122
                  ++l+G    GKStL+n+l+ +
   CCD26465.1  19 CLLLGLDNSGKSTLVNRLQIS 39 
                  567888889*********865 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0046
                  T-EEEEEEE-GGG--HHH..H CS
  RsgA_GTPase  46 giepvivlnKiDlleeee..e 64 
                  + +++ivlnK+Dl+++ +  +
   CCD26465.1 158 DCKIIIVLNKVDLISRGDcgA 178
                  5689**********9988542 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.3e-05     0.018       5      62 ..      18      73 ..      14     128 .. 0.72

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
                EEEEE-STTSSHHHHHHHHHHSS---B---SS-EEETTG...GGTT-SEEEETT-GCC CS
       SRPRB  5 avllvGlsdsGKTslftrLttdsvkktvtSqessaalkvksekgskltliDfPGhekl 62
                + ll+Gl +sGK +l +rL     ++ + S+e    +++  +    +++i fP +++l
  CCD26465.1 18 KCLLLGLDNSGKSTLVNRLQISCSNEKQPSLEVDKMTEI--TPTIGFRIISFPIKDNL 73
                679******************988888888866555555..34455555555554444 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00063      0.87       2      21 ..      18      37 ..      17      91 .. 0.87
   2 ?    3.2   0.1     0.043        59     101     140 ..     154     195 ..     152     203 .. 0.73

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00063
                EEEEEESTTSSHHHHHHHHH CS
      FeoB_N  2 tvalvGnpnvGkttlfnalt 21
                ++ l+G  n+Gk+tl+n+l 
  CCD26465.1 18 KCLLLGLDNSGKSTLVNRLQ 37
                67899************985 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.043
                 HHHTTSSEEEEEETHHHHHHT..TEEE-HHHHHHHHTS-EEE CS
      FeoB_N 101 llelgvpvvlalnmideaekk..gieidlkkLsekLgvpvvk 140
                 ++ ++ +++++ln++d +++   g +  ++ +++++ + vv+
  CCD26465.1 154 VIAVDCKIIIVLNKVDLISRGdcGATTGQEDIENQVRLRVVS 195
                 5678899*********99875225566667777777777765 PP

>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   2.1e-05     0.029      10      51 ..       3      44 ..       1      57 [. 0.86

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.1e-05
                HHHHHTTS-SSS---EEEEE-SSSSSTTTTHHHHHHHGGGS- CS
        DAP3 10 likklkkadkkkkvkrlvltGekgsGKSvlLlqalayAlekg 51
                l++ +kk+++k k ++ +l G + sGKS+l++ +   + +++
  CCD26465.1  3 LLTIIKKQKQKDKEVKCLLLGLDNSGKSTLVNRLQISCSNEK 44
                66779999***********************99988887665 PP

>> Bd3614-deam  Bd3614-like deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00013      0.17      34      71 ..     110     150 ..     105     170 .. 0.62

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00013
  Bd3614-deam  34 vLHAEvnLlapllreeavd...sdteddeiadrdgdgeeer 71 
                   LH  +n l +ll  + +d    ++e+++++d+dgd e+e+
   CCD26465.1 110 RLHESINELRKLLITKSCDvegEQGEGEGDGDGDGDAEAEA 150
                  68999999999998888774332333444444444444333 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0    0.0002      0.28      22      40 ..      15      34 ..       6      44 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0002
      AAA_29 22 kg.atlltGpsGsGKSTllD 40
                k+  +ll G   sGKSTl+ 
  CCD26465.1 15 KEvKCLLLGLDNSGKSTLVN 34
                44579*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       501  (0.0279436); expected 358.6 (0.02)
Passed bias filter:                      443  (0.0247086); expected 358.6 (0.02)
Passed Vit filter:                        72  (0.00401584); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 1856.26
//
Query:       CCD26466.1  [L=522]
Description: hypothetical protein NDAI_0H02930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.2e-57  194.4   0.1    3.6e-57  193.7   0.1    1.3  1  Pkinase         Protein kinase domain
    4.4e-24   85.2   0.0    8.1e-24   84.3   0.0    1.4  1  Pkinase_Tyr     Protein tyrosine kinase
     0.0074   16.2   0.0      0.012   15.6   0.0    1.2  1  APH             Phosphotransferase enzyme family
  ------ inclusion threshold ------
        1.3    7.7   9.8         16    4.1   9.8    2.7  1  Pkinase_fungal  Fungal protein kinase
        3.3    7.7   9.2       0.35   10.9   2.0    2.4  2  CCDC32          Coiled-coil domain containing 32
        3.8    7.0  11.1      0.052   13.1   0.8    2.6  3  Choline_kinase  Choline/ethanolamine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.7   0.1   1.2e-60   3.6e-57       5     264 .]     188     475 ..     184     475 .. 0.87

  Alignments for each domain:
  == domain 1  score: 193.7 bits;  conditional E-value: 1.2e-60
                 EEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEE...........SSEEEEEEE--TTEBHHHHHH.. CS
     Pkinase   5 eklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfee...........kdelylvleyveggeladlle.. 90 
                 e  G+G+fG V+k + +et++ivA+Kk+ ++++ k       rE++ilk+l+hpn+++l+ +f e           + +l l++e++++  l ++++  
  CCD26466.1 188 EIQGSGTFGLVFKSKINETNEIVAIKKVLQNNKVK------NRELSILKNLNHPNVINLKCYFIEkskptitkknePIYLNLIFEFLPQS-LYQRIQhf 279
                 566*************************9998776......379****************999999******997666777*******66.77767668 PP

                 ..HHSS--HHHHHHHHHHHHHHHHHHH.HTTEE-SS-SGGGEEEE.TTTEEEE-SGTTSEESSSSCSBCTTTSCGGGS-HHHH.TTSCBSHHHHHHHHH CS
     Pkinase  91 ..rkgslseeeakkiakqilegleylH.skgiiHrDlKpeNiLid.ekgelKitDFGlakelessskltsfvgtseYlAPEvl.keneyskkvDvWslG 184
                   + +++++ e+k ++ q+++gl+ylH +++i+HrD+Kp+NiLi+ ++ +lKi+DFG ak ++  ++  s++++++Y+APE++ ++ +y +k+D+Ws+G
  CCD26466.1 280 ktTATNIPPLEIKCYMFQLFKGLNYLHnCNKICHRDVKPQNILINpDTFQLKICDFGSAKIINPLQPNVSYICSRYYRAPELIlGSINYNHKIDLWSAG 378
                 7666679999*****************7778**************77777*********************************999************* PP

                 HHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCT.SHH...HHHTTS.......................-HHHHHHHHHHT-SSGCCSTTHHHHH CS
     Pkinase 185 vilyelltgkppfsgekgkekvekeldqlekilkilg.etkeklpeasei.......................seeakdllkkllkkdpkkRltaeell 259
                 +i++el+  kp f+g        +++dq+++i+++ g ++++++++ +                         + +a++l++ llk++p++Rl   ++l
  CCD26466.1 379 CIMAELFLLKPFFKGI-------SDIDQFVEIIRVKGtPNQFEIEQMNGNykdytfprihgvslgrifknvtnDMHAIELMECLLKYNPNERLDSLNCL 470
                 **************43.......467777777777776444444444444556677888999**********999******************999999 PP

                 TSGGG CS
     Pkinase 260 qhpyl 264
                   p++
  CCD26466.1 471 CLPFF 475
                 88887 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   2.7e-27   8.1e-24       5     201 ..     188     387 ..     184     415 .. 0.80

  Alignments for each domain:
  == domain 1  score: 84.3 bits;  conditional E-value: 2.7e-27
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSS..........EEEEEE--TTEBHHHH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.keep..........llivteyvkgGdLlkf 91 
                  +  G+G+fG V++ +++    ++++ Va+K++ ++++ +      +e++i+k+l+hpn+++l    + k++p          l +++e++++ +L + 
   CCD26466.1 188 EIQGSGTFGLVFKSKIN----ETNEIVAIKKVLQNNKVK-----NRELSILKNLNHPNVINLKCYFIeKSKPtitkknepiyLNLIFEFLPQ-SLYQR 275
                  5669*************....89999****997776666.....68****************999985333355555566666678888887.45555 PP

                  HHHT..CTTTSBHHHHHHHHHHHHHHHHHHHHTT.EEEST-SGGGEEEEETT.EEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSE.EEH CS
  Pkinase_Tyr  92 Lrkk..ekekltlkdllsfalqvAkGmeyLeskk.lvHrdlaarNvLlsenk.vvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekk.fts 184
                  +++   + +++   ++ ++++q+ kG++yL++ + + Hrd+  +N+L++ ++ + ki+DfG a+ i   +  + + +  ++  + apE +  +  +++
   CCD26466.1 276 IQHFktTATNIPPLEIKCYMFQLFKGLNYLHNCNkICHRDVKPQNILINPDTfQLKICDFGSAKII---NPLQPNVSYICSRYYRAPELILGSInYNH 370
                  55442346777778999**************965488************87659**********99...6667777778888888****998876*** PP

                  HHHHHHHHHHHHHHHTT CS
  Pkinase_Tyr 185 ksDvWsfGvllwEiftl 201
                  k D Ws G ++ E+f l
   CCD26466.1 371 KIDLWSAGCIMAELFLL 387
                  **************974 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     4e-06     0.012     168     203 ..     311     345 ..     307     359 .. 0.94

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 4e-06
                 EE-SS-SGGGEEEC..TTEEEEE---TT-EEEECCH CS
         APH 168 llHgDlhpgNllvdpddgrvtGviDfedaglgpply 203
                 ++H+D +p+N+l++pd  ++  + Df+ a++ +pl+
  CCD26466.1 311 ICHRDVKPQNILINPDTFQL-KICDFGSAKIINPLQ 345
                 8***************9999.899******999985 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   9.8    0.0055        16     247     341 ..      79     324 ..      16     345 .. 0.66

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.0055
  Pkinase_fungal 247 e.............................lsskaevklkksesskkvekrsvdssvstskrsr............................... 281
                     +                             +     + + +s+s++ ++k++ +++++++k+++                               
      CCD26466.1  79 ApnndkfyitdiinatrdklkprlplspvsS-----SLSSASNSNSGTSKDTLKNEQQNDKNENmqdrkvsssakindmmndsntlttigsklnk 168
                     2555555555666566666666666444331.....22222222222222222222211111112222334455566666677888888899999 PP

  Pkinase_fungal 282 ............................................................................................... 281
                                                                                                                    
      CCD26466.1 169 ivqygkdysltkwleleyleiqgsgtfglvfkskinetneivaikkvlqnnkvknrelsilknlnhpnvinlkcyfiekskptitkknepiylnl 263
                     99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999997777 PP

  Pkinase_fungal 282 .....lenrvhrrlvispvGkpiekaespkellealrDaIkghrsLflkagiLHrDiSenNilit 341
                          ++   +r+  +++ +  i   e ++ +++      kg++ L++  +i HrD+  +Nili+
      CCD26466.1 264 ifeflPQSLYQRIQHFKTTATNIPPLEIKCYMFQL----FKGLNYLHNCNKICHRDVKPQNILIN 324
                     77776444445555566666666666666666555....5899****999**************9 PP

>> CCDC32  Coiled-coil domain containing 32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.8      0.22   6.5e+02      26      74 ..      23      68 ..      12      78 .. 0.56
   2 ?   10.9   2.0   0.00012      0.35      16      80 ..     113     175 ..     104     184 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.2 bits;  conditional E-value: 0.22
      CCDC32 26 eDsFlsssqeeeeeeeaseskasssskkwepledSevYlasLErkLkki 74
                +D ++s+++ ++++ ++s++++s +   +  +e  ++  ++ E+kL+k 
  CCD26466.1 23 SDLYQSTHNPKKHDISRSNTNESVD---HINMEKAAQSTEQPEKKLQKS 68
                5555555555555544333333333...444444444466777777764 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00012
      CCDC32  16 eekaekseeFeDsFlsssqeeeeeeeaseskasssskkwepledSevYlasLErkLkkikkqske 80 
                 ++++++s + +D  ++++q++++e+ +++ k+sss k  + ++dS + l ++  kL+ki +  k+
  CCD26466.1 113 SASNSNSGTSKDTLKNEQQNDKNEN-MQDRKVSSSAKINDMMNDS-NTLTTIGSKLNKIVQYGKD 175
                 4566677777888877766555555.5677777777777777777.89**********9877665 PP

>> Choline_kinase  Choline/ethanolamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.3      0.12   3.6e+02     102     143 ..      29      70 ..       7      75 .. 0.79
   2 ?   -2.7   0.3       1.2   3.6e+03     103     136 ..     128     161 ..     115     173 .. 0.57
   3 ?   13.1   0.8   1.8e-05     0.052     129     171 ..     293     335 ..     218     342 .. 0.82

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.12
                     HCCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHHHHHCHGG CS
  Choline_kinase 102 lnkeaqtkakkekkkkqlklinledlekelekleklleeles 143
                     +++ ++   ++++++++++ in+e+  + +e+ ek l+++++
      CCD26466.1  29 THNPKKHDISRSNTNESVDHINMEKAAQSTEQPEKKLQKSRQ 70 
                     455677788999999999999999999999999999987765 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
                     CCS.TT..ECHHGGCCHCCCTHHHHHHHHHTHHH CS
  Choline_kinase 103 nkeaqtkakkekkkkqlklinledlekeleklek 136
                     n++++ k ++ +++k  ++ +++d+++  ++l  
      CCD26466.1 128 NEQQNDKNENMQDRKVSSSAKINDMMNDSNTLTT 161
                     4444444455555555555555555555555544 PP

  == domain 3  score: 13.1 bits;  conditional E-value: 1.8e-05
                     HHHHTHHHHHHCHGG-EEEE-S--SGGGEEE.-CTTEEEE--G CS
  Choline_kinase 129 kelekleklleelespvvfcHnDlqegNillnkeekklvlIDF 171
                       + +l k l++l++  + cH D+ ++Nil n ++ +l + DF
      CCD26466.1 293 CYMFQLFKGLNYLHNCNKICHRDVKPQNILINPDTFQLKICDF 335
                     4455555666677777899***********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1582  (0.0882369); expected 358.6 (0.02)
Passed bias filter:                      480  (0.0267723); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 3554.75
//
Query:       CCD26467.1  [L=361]
Description: hypothetical protein NDAI_0H02940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-27   94.9   5.1    4.8e-27   94.0   5.1    1.5  1  ADH_N         Alcohol dehydrogenase GroES-like domain
    1.5e-18   67.0   0.0    3.4e-18   65.9   0.0    1.6  2  ADH_zinc_N    Zinc-binding dehydrogenase
    2.3e-05   23.8   0.3    4.1e-05   23.0   0.3    1.3  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
     0.0015   17.9   0.0     0.0025   17.2   0.0    1.3  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.0   5.1   1.1e-30   4.8e-27       2     109 .]      35     150 ..      34     150 .. 0.92

  Alignments for each domain:
  == domain 1  score: 94.0 bits;  conditional E-value: 1.1e-30
                 TEEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS.--TT-EEEE-SEEE.-SSSHHHHTT-GGG-TT.BEETTTS......S CS
       ADH_N   2 gevlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk.lkvGdrVvveplis.cgeCaaCkegeenlCee.akllgvs......l 91 
                  +v ik++++g+CgsD+h ++g ++   + pli+GHEi+G+v+++g+++++ lk GdrV + ++   c +C++C +++e++C++  +++g++       
  CCD26467.1  35 RDVDIKIECCGVCGSDIHAASG-HWGDIEKPLIVGHEIIGTVVKLGSKCENgLKLGDRVGMGAQCYsCLKCDRCLNNNESYCQHfVTTYGMNypdgyaS 132
                 5899******************.8**************************99********9877655***************8845677888889999* PP

                 -SSSBSEEEECGGGEEEE CS
       ADH_N  92 dGgfaeyvvvpekklvkl 109
                 +Gg+ae v v+e++++++
  CCD26467.1 133 KGGYAEFVRVHEHFVIPI 150
                 **************9985 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.6   7.1e+03      56      67 ..      34      45 ..      23      47 .. 0.86
   2 !   65.9   0.0   7.6e-22   3.4e-18       1     129 [.     191     316 ..     191     317 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.6
                TSSEEEEEESSC CS
  ADH_zinc_N 56 gegvdvvfecvG 67
                +++vd+ +ec G
  CCD26467.1 34 DRDVDIKIECCG 45
                6789999***99 PP

  == domain 2  score: 65.9 bits;  conditional E-value: 7.6e-22
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSC..SHHHHHHHHHCEEEEEEEEECSCTSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvG..sgatleaalkllkpgGrlvvvGggkgeee 96 
                 g+G++++ +A+alGaev+a++++++k+e akklGa+++i +ke+ d+  +  + +     d+++ c+   s   ++   k +k gG++v + ++ ++e+
  CCD26467.1 191 GIGHMGLIFANALGAEVYAISRTSKKREDAKKLGAHHFIATKEEpDWGTKYFDTF-----DLIVVCASslSDIDFNVVPKTMKIGGKIVSICVPDENEV 284
                 8****************************************99888888887766.....6666666655899********************999999 PP

                 EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 fdlrnlllkeksilGsllgslreefkealdlla 129
                 + l+++ l  +si  s+lgs   e+k++l+l++
  CCD26467.1 285 LALKPFGLLGVSISNSHLGS-VAEIKQMLKLVS 316
                 ********************.8*******9986 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.3   9.1e-09   4.1e-05      36      81 ..     181     226 ..     178     234 .. 0.91

  Alignments for each domain:
  == domain 1  score: 23.0 bits;  conditional E-value: 9.1e-09
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTCE CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgve 81 
                   gk+vGi+G+G IG+     ++a+g++v+a++r+ kk+e++++lg++
    CCD26467.1 181 GKKVGIMGIGGIGHMGLIFANALGAEVYAISRTSKKREDAKKLGAH 226
                   89*********************************99988888874 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   5.5e-07    0.0025      30      99 ..     183     252 ..     170     277 .. 0.89

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 5.5e-07
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEEE-- CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvigtv 99 
                  kv ++G G  G   +  a++lga+V+++   ++++e  ++lga+ + + k++ +  ++   + d+++ ++
   CCD26467.1 183 KVGIMGIGGIGHMGLIFANALGAEVYAISRTSKKREDAKKLGAHHFIATKEEPDWGTKYFDTFDLIVVCA 252
                  799****************************************988888999999999999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       634  (0.0353617); expected 358.6 (0.02)
Passed bias filter:                      441  (0.024597); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.26s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2639.06
//
Query:       CCD26468.1  [L=363]
Description: hypothetical protein NDAI_0H02950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-28   99.1   4.1    2.5e-28   98.1   4.1    1.5  1  ADH_N         Alcohol dehydrogenase GroES-like domain
      8e-18   64.7   0.0    1.5e-17   63.8   0.0    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
    0.00022   20.6   0.1    0.00046   19.6   0.1    1.4  1  2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, 
     0.0097   15.2   0.0      0.017   14.4   0.0    1.3  1  AlaDh_PNT_C   Alanine dehydrogenase/PNT, C-terminal domain


Domain annotation for each model (and alignments):
>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   4.1   5.6e-32   2.5e-28       3     109 .]      39     152 ..      37     152 .. 0.93

  Alignments for each domain:
  == domain 1  score: 98.1 bits;  conditional E-value: 5.6e-32
                 EEEEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS--TT-EEEE-SEEE.-SSSHHHHTT-GGG-.......TTBEETTTSS-S CS
       ADH_N   3 evlikvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkklkvGdrVvveplis.cgeCaaCkegeenlC.......eeakllgvsldG 93 
                 +v +k++++g+CgsD+h+++g ++ e+k pl++GHEi+G+v ++g+++++lkvGdrV + +++  c eC++Ck+++e +C       ++  + g++ +G
  CCD26468.1  39 DVEVKIECCGVCGSDIHTASG-HWGETKKPLVVGHEIIGTVTQIGSQCNELKVGDRVGIGAQVFsCLECDRCKSDNEPYCpktvntyRKDYTDGYNSKG 136
                 799******************.8***********************************9776655***************9999887777788888*** PP

                 SSBSEEEECGGGEEEE CS
       ADH_N  94 gfaeyvvvpekklvkl 109
                 g+a+y+ ++e+++v++
  CCD26468.1 137 GYADYIRLHEHFAVPI 152
                 ***********99875 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   3.4e-21   1.5e-17       1     129 [.     193     318 ..     193     319 .. 0.91

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 3.4e-21
                 HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHTTTSSEEEEEESSC..SHHHHHHHHHCEEEEEEEEECSCTSSEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGaeviavdsseeklelakklGadevinykea.dlverikeltggegvdvvfecvG..sgatleaalkllkpgGrlvvvGggkgeee 96 
                 g+G++++ +Aka+Gae++a+++s+ k e a k+Gad++i +ke+ d+     + +  + +d+++ c++  +   ++   + +k gG++v + +++++e+
  CCD26468.1 193 GIGHMGLIFAKAMGAETFAISRSSAKKEDAIKMGADHFIATKEEpDW---ATKYF--DTFDLIVVCSNslTDIDFNVVPRTMKVGGKIVSICVPEQHEV 286
                 8****************************************885454...44455..36788888888667999************************* PP

                 EEHHHHHHTT-EEEEE-SSCHHHHHHHHHHHHH CS
  ADH_zinc_N  97 fdlrnlllkeksilGsllgslreefkealdlla 129
                 ++l+++ l  +si  s lg+  +e+k++ldl++
  CCD26468.1 287 MNLKPFGLIGVSISNSALGG-INEIKQMLDLVS 318
                 ********************.9********987 PP

>> 2-Hacid_dh_C  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1     1e-07   0.00046      36      80 ..     183     227 ..     180     239 .. 0.86

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 1e-07
                   TSEEEEES-SHHHHHHHHHHHHTT-EEEEESSSHHHHHCHHHHTC CS
  2-Hacid_dh_C  36 gktvGiiGlGrIGqavakrlkafgmkviaydrskkkeeeeeelgv 80 
                   gk+vGi+G+G IG+     +ka+g++ +a++rs  k+e++ ++g+
    CCD26468.1 183 GKKVGIMGIGGIGHMGLIFAKAMGAETFAISRSSAKKEDAIKMGA 227
                   89*******************************987775555554 PP

>> AlaDh_PNT_C  Alanine dehydrogenase/PNT, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.8e-06     0.017      30      96 ..     185     251 ..     175     261 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 3.8e-06
                  EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTCECEEHCHHHHHHHHHHHH-SEEE CS
  AlaDh_PNT_C  30 kvlviGgGvaGlqAiatakglgakVtvlDvrparleqleslgakfvevlksqeellaeavkeadvvi 96 
                  kv ++G G  G   +  ak++ga++ ++  ++a++e   ++ga  + + k++ +  ++   + d+++
   CCD26468.1 185 KVGIMGIGGIGHMGLIFAKAMGAETFAISRSSAKKEDAIKMGADHFIATKEEPDWATKYFDTFDLIV 251
                  799***************************************9988888999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2808.58
//
Query:       CCD26469.1  [L=344]
Description: hypothetical protein NDAI_0H02960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.4e-64  215.7   0.0    8.5e-64  215.6   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.6   0.0   4.7e-68   8.5e-64       1     291 [.      19     335 ..      19     338 .. 0.91

  Alignments for each domain:
  == domain 1  score: 215.6 bits;  conditional E-value: 4.7e-68
                   .EEEE-SSS-ST......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE....................-- CS
  Aldo_ket_red   1 elglGtwqlgsk.....eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv....................dl 72 
                   +l++G +++gsk      e +ke+++++l+++++ G+++fDtA+vY +g+se+llGe+l k + +re+v+i tK                     d 
    CCD26469.1  19 PLIVGCMSYGSKtwaewVEDDKEKVFQILKHCYDIGFRTFDTADVYSNGKSERLLGEFLRKFNIRRETVVILTKTnfpvdetlvlpigdanrsenDT 115
                   6899********9987667788889999*******************************************************************99 PP

                   SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-B CS
  Aldo_ket_red  73 rdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveyn 165
                    d  +++gls+++i +s+++s++rLgt y+D+l++Hr dp++p i e+++al+++v++G +r+iG S+    q  ++     k    ++v vq +yn
    CCD26469.1 116 LDLVNQQGLSRKHILQSVKNSVERLGT-YIDVLQIHRFDPNTP-IKETMKALNDVVEKGDVRYIGASSMLPTQFVEMqgvaDKYDWFQFVNVQSQYN 210
                   9*************************6.***************.***********************99888888888888999999********** PP

                   TT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTTSS-...--SSSCCC-------TS-HHHH.HHHHHHHHHHHHTT--HHHHHHHHHTTSTT-S CS
  Aldo_ket_red 166 llreleeegllelckkkgvpliaysplggGlltgkyqse...edkedkeprkdlkrdertsknl.daaeelselakehgvslaqlalryalsqpavg 258
                   ll +++e+ l ++ckk++++l ++sp  +Gllt+ +  e   + k+++ +++dl   ++++ ++   +++++el k++gv +a+++ +++l   ++ 
    CCD26469.1 211 LLYREDERDLMKYCKKHNIALTPWSPNYQGLLTRPVGVEsvrSTKDKFINAWDL---KKFDPAQkAIIDRVEELSKKKGVPMAAISTAWVL--AKGC 302
                   *********************************755433000334444555555...4455444056799*********************..9*** PP

                   EEEE--SSHHHHHHHHGGGG----HHHHHHHHH CS
  Aldo_ket_red 259 ivipgasnieqlednldalelklseeevaelde 291
                    +i+g+s+i+++++  +al++k++eee+a+l+e
    CCD26469.1 303 YPIVGMSSIKRVDEAKEALDVKFTEEELAYLEE 335
                   *****************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2712.10
//
Query:       CCD26470.1  [L=480]
Description: hypothetical protein NDAI_0H02970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
  ------ inclusion threshold ------
       0.11   12.4   5.9       0.47   10.4   3.0    2.3  2  zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)


Domain annotation for each model (and alignments):
>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   3.0   2.6e-05      0.47       3      35 ..     249     282 ..     247     288 .. 0.84
   2 ?    2.4   0.0    0.0081   1.5e+02      36      46 ..     312     322 ..     306     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2.6e-05
                 SB-TTTSSS.BS-EEETTEEEEEE-HHHHHHHHH CS
  zf-C3HC4_3   3 eeCviCler.prnvvllpCgHlvlCeeCaekllk 35 
                 +eC+iC+   p+   + +C+ + +C eC+ ++++
  CCD26470.1 249 NECPICFLYfPEPLNYSKCCLQPICTECFVQIKR 282
                 79******9566678889*************976 PP

  == domain 2  score: 2.4 bits;  conditional E-value: 0.0081
                 TT-B-TTT--B CS
  zf-C3HC4_3  36 rkkkCpiCrrp 46 
                 + ++Cp+C +p
  CCD26470.1 312 EPATCPYCATP 322
                 6789****876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       823  (0.0459033); expected 358.6 (0.02)
Passed bias filter:                      401  (0.022366); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3737.69
//
Query:       CCD26471.1  [L=225]
Description: hypothetical protein NDAI_0H02980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.3e-67  226.3   4.3    3.4e-67  225.8   4.3    1.2  1  Ribosomal_L13e  Ribosomal protein L13e


Domain annotation for each model (and alignments):
>> Ribosomal_L13e  Ribosomal protein L13e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.8   4.3   1.9e-71   3.4e-67       2     180 .]       9     175 ..       8     175 .. 0.93

  Alignments for each domain:
  == domain 1  score: 225.8 bits;  conditional E-value: 1.9e-71
  Ribosomal_L13e   2 ipnnhfrKdwqrrvktwfdqparkkrRrearqakaakvaprpvekLrPvVrcptvrYntkvraGrGFtleElkaagiskklArtiGIavDhRrkn 96 
                     i +nhfrK+wq+rvk++fdq+++k +Rr+ar+akaak+aprp+++LrPvVr+ptvrYn+kvraGrGF+l+E+kaag+++++ArtiGIavDhRr+n
      CCD26471.1   9 ILKNHFRKHWQERVKVHFDQAGKKVSRRNARAAKAAKIAPRPLDLLRPVVRAPTVRYNRKVRAGRGFSLAEVKAAGLTAAYARTIGIAVDHRRQN 103
                     789******************************************************************************************** PP

  Ribosomal_L13e  97 kseeslkaNveRLkeYkskLilfprkakkpkkgdaskeelkaakqvkvaavlpikkeakkekaraiteeekkfkayrtlrkara 180
                     +++e ++ Nv+RLkeY+sk+i+fpr+ k+p++          ++ +++aa++pi+++++++++ra++++   ++a+rtlr ar+
      CCD26471.1 104 TNQEIFELNVQRLKEYQSKIIVFPRNGKAPEA----------EQVLSAAATFPIAQPTTDVETRAVEDN--GESAFRTLRLARS 175
                     *************************9544432..........234566779*************99888..589******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       606  (0.0338); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1771.70
//
Query:       CCD26472.1  [L=143]
Description: hypothetical protein NDAI_0H02990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.9e-32  111.7   0.1    3.3e-32  111.5   0.1    1.0  1  Ribosomal_S9  Ribosomal protein S9/S16


Domain annotation for each model (and alignments):
>> Ribosomal_S9  Ribosomal protein S9/S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.5   0.1   1.9e-36   3.3e-32       1     121 []      11     143 .]      11     143 .] 0.94

  Alignments for each domain:
  == domain 1  score: 111.5 bits;  conditional E-value: 1.9e-36
                   EECTTEEEEEEEEESSSEEEETTEECCHHSTTSCHHHHHCHHHHHTTTSS..SEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHH.....HHHHHHC CS
  Ribosomal_S9   1 GrrKesvArvwikegkgkilvngksleeYfkeeaarekvleplkltgllg..kfdvfvkvkgGGlsgqaeAirlgiaraLvalek.....eekkeLk 90 
                   G++K+++A +++k+gkg i+vng ++   ++ e  r kv+epl l+gl +  ++d++v+v+gGG+++q++Air++ia++Lv++++     ++k+eLk
    CCD26472.1  11 GKKKSATAVAHVKAGKGLIKVNGSPITL-VEPEILRFKVYEPLLLVGLDKfsNIDIRVRVTGGGHVSQVYAIRQAIAKGLVSYHQkfvdeQSKNELK 106
                   89*************************9.877**************9987767******************************98788755599999 PP

                   ......TCCCTS-B--------TTSSCTTB----S-- CS
  Ribosomal_S9  91 ......kaglltrDpRvvErkKtgkkkARkkyqwskR 121
                         +++ll +D+R+ E+kK+g k+AR+++q+s+R
    CCD26472.1 107 kaftsyDRTLLIADARRPEPKKFGGKGARSRFQKSYR 143
                   7777777****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       506  (0.0282224); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1067.84
//
Query:       CCD26473.1  [L=330]
Description: hypothetical protein NDAI_0H03000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.075   13.5   3.8        0.2   12.1   3.8    1.8  1  Imm59     Immunity protein 59


Domain annotation for each model (and alignments):
>> Imm59  Immunity protein 59
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   3.8   1.1e-05       0.2       5      45 ..     156     197 ..     153     226 .. 0.81

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 1.1e-05
       Imm59   5 kkeleeeieklgYesLrysifeeekreeyevrieykn.ekye 45 
                 + e+e++++k+ Ye+L+y ++ee++    ++r + ++ +ky 
  CCD26473.1 156 RYEIEKNLQKKEYERLKYQLLEEKQSYMIQLRAKDHKvNKYK 197
                 789*******************99988777777666567775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1850  (0.103185); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 2509.37
//
Query:       CCD26474.1  [L=576]
Description: hypothetical protein NDAI_0H03010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.6e-48  162.9   0.0    1.2e-47  162.6   0.0    1.1  1  Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
      5e-11   43.0   0.1    2.2e-09   37.7   0.4    2.9  2  Pyr_redox    Pyridine nucleotide-disulphide oxidoreductase
    0.00095   18.5   0.7        1.4    8.1   0.0    3.2  3  Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase


Domain annotation for each model (and alignments):
>> Pyr_redox_2  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.0     2e-51   1.2e-47       3     294 .]     118     454 ..     116     454 .. 0.90

  Alignments for each domain:
  == domain 1  score: 162.6 bits;  conditional E-value: 2e-51
                  EEEE--SHHHHHHHHHHHHHTS-EEEEETTHCHHHCSHHHHCHHHHHHHHHHHHH...HHHHCHHHHCCCCHCCTCEEEEESCEEEEETEEEC..... CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..... RF
  Pyr_redox_2   3 vvviGgGpAGlaaaltlaqagakvtlvelegtclnggcllskallgvaedaeias...evvkklnqgielllgeevvkidpgkkkvklekkke..... 92 
                   +++G+G++++++ ++l +  ++v+++ + ++ ++++++l+++ +g+ + ++i++      ++ + +++++ g e+v+idp++++v +++ ++     
   CCD26474.1 118 TIILGSGWGAVSLLKNLDTTLYNVIVI-SPRNYFLFTPFLPSTPVGTIDLKSIVEpvrSIARRSKGEVIYVEG-EAVNIDPKNQTVSVKEISSlnded 213
                  69*************************.999999999********************6555555556999999.**************7776699997 PP

                  ....TCEEEEEESEEEE---EEE-BCTCTTC.TTBEECCSECHHHHHHCCSS-T..................SEEEEES-SHHHHHHHHHHHHHT-.. CS
                  ....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..................xxxxxxxxxxxxxxxxxxxxxxxx.. RF
  Pyr_redox_2  93 ....gdeekiaydklvlAtGssprdlgipGvaenvgklvrtldsaealklkllp..................krivvvGgGyiGvElAaalaklgk.. 166
                        + ++++d+lv+A Gs+p ++g+pGv e++ +l +++ +a+ ++lk l+                   ++vvvGgG++GvE+Aa+l+++ +  
   CCD26474.1 214 deerIRKLDLKFDYLVVAVGSQPTTFGVPGVLEHGSFL-KEISDARDIRLKILNnievannlpkddplraklLKFVVVGGGPTGVEFAAELKDYVSed 310
                  766644567788**********************9999.************************999999888888****************9998789 PP

                  ............EEEEEESSSSSSTTS-HHHHHHHHHHHHHTTEEEEESCEEEEEEETTEEEEEEETTSCEEEESEEEE-S-EEES-HHCS..HCCT- CS
                  ............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxx RF
  Pyr_redox_2 167 ............evtlveardrllraldkelsaaleealekeGvevklgtsvkeidgngeklevvledgeeidadlvvvavGvrpstelle..eklgl 250
                              + tl+e ++++l++++k+l +++++++ k+ +e+kl+t+vke++++   ++   ++ eei++  +v+a+G  p++ +++   +l  
   CCD26474.1 311 laaampeiskeiKLTLIEGAPNILNSFNKSLVEYAQDVFAKSRIELKLKTQVKEVTKDYILAKNGGGEIEEIPYGVLVWATGNAPRDVTKKlmTSLPE 408
                  99999999999999******************************************999833344444445******************999888888 PP

                  EEEETTEEE--TTSBE..SSTTEEE-GGGCTECCSS--HHHHHHHH CS
                  xxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Pyr_redox_2 251 elderggivvdeflrt..nvpgiyaiGDvaggkggpelaqaAvqqG 294
                  + ++r+g++++++l+      +iyaiGD++   g + +aq+A+q++
   CCD26474.1 409 QQNSRRGLLINDKLQLlgAEGSIYAIGDCTFHPGLFPTAQVAHQEA 454
                  88*************8545899********888999*******997 PP

>> Pyr_redox  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.15     9e+02       3      35 ..     119     151 ..     117     159 .. 0.86
   2 !   37.7   0.4   3.7e-13   2.2e-09       1      69 [.     286     368 ..     286     371 .. 0.88

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.15
                 EEECSSHHHHHHHHHHHHTTSEEEEEESSSSSS CS
   Pyr_redox   3 vvvGgGyiglElAgalaelgkkVtvversdkll 35 
                 +++G+G+ ++ l ++l     +V v+  ++ +l
  CCD26474.1 119 IILGSGWGAVSLLKNLDTTLYNVIVISPRNYFL 151
                 899*************99999*****9999998 PP

  == domain 2  score: 37.7 bits;  conditional E-value: 3.7e-13
                 EEEEECSSHHHHHHHHHHHHTT..............SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEECSEEEEEEEEE CS
   Pyr_redox   1 kvvvvGgGyiglElAgalaelg..............kkVtvversdkllrllDeeaskilqeklekngievllntkveeiegs 69 
                 k vvvGgG +g+E+A++l+++                k t++e ++++l+ +++ + ++ q+ + k  ie+ l+t+v+e++++
  CCD26474.1 286 KFVVVGGGPTGVEFAAELKDYVsedlaaampeiskeIKLTLIEGAPNILNSFNKSLVEYAQDVFAKSRIELKLKTQVKEVTKD 368
                 579***************665555555667777654577*****************************************976 PP

>> Pyr_redox_3  Pyridine nucleotide-disulphide oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.026   1.5e+02      40     152 ..     146     250 ..     136     264 .. 0.59
   2 !    8.1   0.0   0.00023       1.4       1      19 [.     288     306 ..     288     313 .. 0.88
   3 !    5.4   0.1    0.0015       9.2      80     110 ..     338     368 ..     308     397 .. 0.80

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.026
  Pyr_redox_3  40 pkemtfispsftsekleipdlnaiseetspafslkeeklsrkealeYlrevaksfelpiklfeeVesvkk.edegfevetsketyeAkkviiAtGefd 136
                  p++  +++p  +s+ ++++dl++i+e   p  s+ ++   +  ++e  +   + +    ++  +V+++++ +de  e + +k +++ +++++A G   
   CCD26474.1 146 PRNYFLFTPFLPSTPVGTIDLKSIVE---PVRSIARRSKGEVIYVEGEAVNIDPK----NQTVSVKEISSlNDEDDEERIRKLDLKFDYLVVAVGS-- 234
                  56666777777777777777777764...54445555433333333222222222....3334455555433333444446889999999999998.. PP

  Pyr_redox_3 137 kPnklnipGeeklvkh 152
                  +P + ++pG  ++   
   CCD26474.1 235 QPTTFGVPGVLEHGSF 250
                  9999999998644443 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00023
  Pyr_redox_3   1 iIiGaGPaGlaaaielkka 19 
                  +++G+GP G+++a elk+ 
   CCD26474.1 288 VVVGGGPTGVEFAAELKDY 306
                  79**************986 PP

  == domain 3  score: 5.4 bits;  conditional E-value: 0.0015
  Pyr_redox_3  80 rkealeYlrevaksfelpiklfeeVesvkke 110
                  +k ++eY + v ++ +++ kl+++V++v+k+
   CCD26474.1 338 NKSLVEYAQDVFAKSRIELKLKTQVKEVTKD 368
                  56789***********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       610  (0.0340231); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 3970.27
//
Query:       CCD26475.1  [L=66]
Description: hypothetical protein NDAI_0H03020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-09   38.9  12.0    1.2e-09   38.9  12.0    2.2  2  4F5         4F5 protein family
  ------ inclusion threshold ------
       0.01   15.5   0.0      0.016   14.8   0.0    1.4  1  Vac_Fusion  Chordopoxvirus multifunctional envelope protein A


Domain annotation for each model (and alignments):
>> 4F5  4F5 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9  12.0   1.3e-13   1.2e-09       1      36 [.       1      35 [.       1      36 [. 0.90
   2 ?    0.2   3.4      0.16   1.5e+03      11      26 ..      43      57 ..      39      65 .. 0.66

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 1.3e-13
                ---SGGGTTTSTTT---SS...SS-SS-SS----TT CS
         4F5  1 MtRGnQRdqaRernqKKaaeqkgkgaksglkaaera 36
                M+RGnQR++aR++n+KK++e+ +k++k+g +  +r+
  CCD26475.1  1 MARGNQRELARQKNLKKQQEN-AKNQKKGGDVLKRM 35
                ********************9.88999988877776 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.16
                STTT---SS...SS-S CS
         4F5 11 RernqKKaaeqkgkga 26
                R++ +  +a++  ++a
  CCD26475.1 43 RQKQAAANARK-EAEA 57
                88888888876.4444 PP

>> Vac_Fusion  Chordopoxvirus multifunctional envelope protein A27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.8e-06     0.016      14      42 ..      16      44 ..       9      53 .. 0.90

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.8e-06
                HHHHHHHHHHHHHHHHHHHHH-XXXXXXX CS
  Vac_Fusion 14 kdfqlvikcckrvnealkRlEnHleTlRk 42
                k+ q+ +k++k+ +++lkR+E  +e lR+
  CCD26475.1 16 KKQQENAKNQKKGGDVLKRMESDAEILRQ 44
                5678899*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1818  (0.1014); expected 358.6 (0.02)
Passed bias filter:                      448  (0.0249875); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.23s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 514.56
//
Query:       CCD26476.1  [L=350]
Description: hypothetical protein NDAI_0H03030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-20   73.5   4.1    5.7e-05   23.8   0.6    6.2  6  WD40         WD domain, G-beta repeat
    1.1e-06   28.9   0.2        2.7    8.4   0.0    5.0  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    0.00017   21.5   0.5       0.84    9.5   0.1    3.3  4  eIF2A        Eukaryotic translation initiation factor eIF2A
  ------ inclusion threshold ------
       0.12   12.5   0.0         18    5.5   0.0    2.5  2  SoxD         Sarcosine oxidase, delta subunit family


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.5e-05      0.16       8      37 ..       7      37 ..       3      37 .. 0.91
   2 !   23.8   0.6   1.3e-08   5.7e-05       2      38 .]      43      80 ..      42      80 .. 0.93
   3 !    6.3   0.1    0.0044        20       2      26 ..      85     109 ..      84     121 .. 0.83
   4 ?    1.5   0.0      0.14   6.3e+02      17      33 ..     157     176 ..     134     180 .. 0.75
   5 !    9.9   0.0   0.00031       1.4      10      36 ..     198     225 ..     190     227 .. 0.86
   6 !   13.9   0.0   1.8e-05     0.079       4      36 ..     289     322 ..     286     324 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 3.5e-05
                ESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  8 tGH.ssvtslafspdgawlasGsdDgtvriW 37
                 GH  + t ++++++g++++s+s+D+   iW
  CCD26476.1  7 MGHeRPLTQVKYNKEGDLIFSCSKDNFASIW 37
                599777*********************9999 PP

  == domain 2  score: 23.8 bits;  conditional E-value: 1.3e-08
                EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38
                + l+tl GH + ++s+++++  +  ++Gs D ++++W+
  CCD26476.1 43 ERLGTLNGHaGTIWSIDVDQFTKCCVTGSADYSIKVWN 80
                6789*****777*************************8 PP

  == domain 3  score: 6.3 bits;  conditional E-value: 0.0044
                 EEEEEEESSSSEEEEEEETTSSEEE CS
        WD40   2 qclrtltGHssvtslafspdgawla 26 
                  c++t++   +v  ++fsp g++++
  CCD26476.1  85 VCVHTWKSPVPVKNVSFSPCGNYIS 109
                 688888876679***********85 PP

  == domain 4  score: 1.5 bits;  conditional E-value: 0.14
                 E...EETTSSEEEEEETTSE CS
        WD40  17 a...fspdgawlasGsdDgt 33 
                     +s +g+++++G++ g 
  CCD26476.1 157 VvagWSIEGKYIIAGHKEGE 176
                 15578889*******97765 PP

  == domain 5  score: 9.9 bits;  conditional E-value: 0.00031
                 SSS.EEEEEEETTSSEEEEEETTSEEEE CS
        WD40  10 Hss.vtslafspdgawlasGsdDgtvri 36 
                 H+  +t+++fs d ++++++s+D + +i
  CCD26476.1 198 HKQlITDIQFSADRTYFITASRDSNAYI 225
                 75569******************98776 PP

  == domain 6  score: 13.9 bits;  conditional E-value: 1.8e-05
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvri 36 
                 ++  +GH ++ +++a+sp g+  +sG++ g vr+
  CCD26476.1 289 IGRVKGHfGPLNCVAVSPQGTSYISGGEEGLVRV 322
                 56679**888************889**9999997 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.024   1.1e+02      38      81 ..      10      53 ..       6      63 .. 0.84
   2 ?    3.0   0.0     0.028   1.3e+02      29      76 ..      78     136 ..      75     148 .. 0.72
   3 !    6.9   0.0    0.0017       7.8      43      75 ..     158     190 ..     135     197 .. 0.75
   4 !    8.4   0.0    0.0006       2.7      34      86 ..     195     247 ..     186     251 .. 0.86
   5 ?   -1.0   0.0      0.51   2.3e+03      41      78 ..     299     336 ..     282     343 .. 0.78

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.024
  ANAPC4_WD40 38 dsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81
                 ++  ++++++++g l+    +d+  ++  + +g+ + +l+ ++ 
   CCD26476.1 10 ERPLTQVKYNKEGDLIFSCSKDNFASIWYSVNGERLGTLNGHAG 53
                 567899*********************99999998888776665 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.028
  ANAPC4_WD40  29 vwtl......eedkedsevrsLaWkpdgklLavaysd.....gevrlldaesgkvvhsl 76 
                  vw++      ++ k+   v++++++p g+ +    ++     g+++++++e  +v h++
   CCD26476.1  78 VWNVqdgvcvHTWKSPVPVKNVSFSPCGNYISAILDNvmkhvGSINVYKVERDEVTHEI 136
                  56555555556667778899999999999987555443333389999999999998876 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0017
  ANAPC4_WD40  43 sLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                     W+ +gk +  ++++ge++ +++ + k   +
   CCD26476.1 158 VAGWSIEGKYIIAGHKEGEISKYEIADDKSSFK 190
                  457******************999998886655 PP

  == domain 4  score: 8.4 bits;  conditional E-value: 0.0006
  ANAPC4_WD40  34 edkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtc 86 
                  ++ +++ +++++++ d + +  a  d++  ++d+es +v+++++++   + +c
   CCD26476.1 195 KKLHKQLITDIQFSADRTYFITASRDSNAYIVDVESFDVLKTYETDCPLNSAC 247
                  4567899**********************************999876655555 PP

  == domain 5  score: -1.0 bits;  conditional E-value: 0.51
  ANAPC4_WD40  41 vrsLaWkpdgklLavaysdgevrlldaesgkvvhslsv 78 
                   +++a +p+g+    + ++g vr+++ e+     +++v
   CCD26476.1 299 LNCVAVSPQGTSYISGGEEGLVRVHHFEKSYFDFKYDV 336
                  56777889999999999999999999998766666655 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1      0.01        47      82     154 ..      12      82 ..       4      99 .. 0.74
   2 !    9.5   0.1   0.00019      0.84      66     136 ..      55     131 ..      49     141 .. 0.77
   3 !    7.6   0.0   0.00071       3.2     108     162 ..     161     218 ..     143     228 .. 0.74
   4 ?   -3.3   0.0       1.5   6.7e+03     101     119 ..     297     315 ..     280     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.01
                 SCEEEEEECSCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--EEEE-TT CS
       eIF2A  82 pakvslfdlkvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatlvewspd 154
                 p + + +++++++i++ ++++  +i +s +g+   l+ +   aG++   dv++++k   + +a+ +   w+ +
  CCD26476.1  12 PLTQVKYNKEGDLIFSCSKDNFASIWYSVNGER--LGTLNGHAGTIWSIDVDQFTKCCVTGSADYSIKVWNVQ 82 
                 555556899999999999999999999999985..68888888888888888888877777777777777644 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00019
                 EE-TTSS-E..EEEESSSSCEEEEEECS.CEEEEEEEE.ES--EEEE-TTSSEE..EEE-TTSSS-EEEEEETTTTE CS
       eIF2A  66 aWspkskef..aviyGkmpakvslfdlk.vkvisklee.qkrNtiffspkgklv..llaGfgnlaGeleiwdvkkkk 136
                  Ws + ++f  + + G ++ ++++++++ +  +++ ++  +   + fsp g+++  +l +     G++++++v++ +
  CCD26476.1  55 IWSIDVDQFtkCCVTGSADYSIKVWNVQdGVCVHTWKSpVPVKNVSFSPCGNYIsaILDNVMKHVGSINVYKVERDE 131
                 699999999666899************866666666542577889********8444566666669****9998655 PP

  == domain 3  score: 7.6 bits;  conditional E-value: 0.00071
                 E-TTSSEEEEE-TTSSS-EEEEEETT...TTEEEEEEE-TT--EEEE-TTSSEEEEEE CS
       eIF2A 108 fspkgklvllaGfgnlaGeleiwdvk...kkkkiakaeaanatlvewspdgryvlTat 162
                 +s +gk+++ +       + ei d k   k+ + +k++++  t++++s d +y++Ta+
  CCD26476.1 161 WSIEGKYIIAGHKEGEISKYEIADDKssfKFVESKKLHKQLITDIQFSADRTYFITAS 218
                 889999987544333335556666665334445567778889**************98 PP

  == domain 4  score: -3.3 bits;  conditional E-value: 1.5
                 ES--EEEE-TTSSEEEEE- CS
       eIF2A 101 qkrNtiffspkgklvllaG 119
                  + N++  sp+g+  + +G
  CCD26476.1 297 GPLNCVAVSPQGTSYISGG 315
                 5789999999998877776 PP

>> SoxD  Sarcosine oxidase, delta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.011        51      60      78 ..     120     138 ..     112     141 .. 0.85
   2 ?    5.5   0.0     0.004        18       3      41 ..     240     280 ..     239     290 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.011
        SoxD  60 GcrkwlvveRdTvtheilk 78 
                 G+ +  +veRd vtheilk
  CCD26476.1 120 GSINVYKVERDEVTHEILK 138
                 6778889**********97 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.004
        SoxD   3 tCPlcge..rdesEFaygGeakiarpedpeelsdeewadyl 41 
                 +CPl+ +   + +EF++ G  ++ar  +++++s+ ++++ +
  CCD26476.1 240 DCPLNSAciTPLKEFVILGGGQAARDVTTTSASEGKFEARF 280
                 69999988899***************999999999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       419  (0.02337); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2799.32
//
Query:       CCD26477.1  [L=245]
Description: hypothetical protein NDAI_0H03040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.028   13.0   8.6      0.028   13.0   8.6    1.2  1  RRN3          RNA polymerase I specific transcription initiat
      0.051   11.9   8.8      0.056   11.7   8.8    1.2  1  CDC45         CDC45-like protein
        1.6    7.8  18.0        1.8    7.6  18.0    1.2  1  DUF2457       Protein of unknown function (DUF2457)
        2.5    7.3  13.3        4.3    6.6  13.3    1.4  1  NOA36         NOA36 protein
        5.9    4.5   8.5        6.7    4.4   8.5    1.2  1  PI3K_1B_p101  Phosphoinositide 3-kinase gamma adapter protein
          6    7.2  14.4        2.4    8.5  11.9    1.6  1  Vfa1          AAA-ATPase Vps4-associated protein 1
          6    4.9  21.7        8.6    4.4  21.7    1.3  1  Nop14         Nop14-like family


Domain annotation for each model (and alignments):
>> RRN3  RNA polymerase I specific transcription initiation factor RRN3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   8.6   1.1e-05     0.028     206     318 ..      53     162 ..      13     231 .. 0.57

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.1e-05
        RRN3 206 likiDVeiqveledlddeedeeleeeleededdedddedd.........eesdlddlssdeeaeed.ee.kdeeeeslkkikelvekLDa..iltllfe 291
                  ++   +   e+ed d+ee++++e++ +e       ++++         ++ ++d++++++++e d  e +++ ++ +++ik+  + L +  + tll++
  CCD26477.1  53 EVEENLDPIEEVEDEDEEEEDDDENDEDE-------ENENqgsdgdvrtTQTSFDSIDDKSQKELDpFElNNKFDKMVESIKNQENPLNEsdLQTLLLT 144
                 33333332334454444444444444222.......111112122344422222222222222222122233333444555555555542114555555 PP

        RRN3 292 hlekkfssestkeeeeeeeglelfntL 318
                 ++e+  +s++    e+    ++ +++L
  CCD26477.1 145 YTEE--TSKN---LEN----QKDYKML 162
                 5555..1111...122....2233444 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   8.8   2.2e-05     0.056     114     196 ..      52     143 ..      10     204 .. 0.45

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 2.2e-05
       CDC45 114 eeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrksksdeeee........sddddersrkrrrse......... 195
                 +e+ee+ + +e++e+e+e++e+d+e++e d+++e++ ++ + ++ +++ d+ ++k      s+   +        ++ d+  ++ +++++         
  CCD26477.1  52 DEVEENLDPIEEVEDEDEEEEDDDENDE-DEENENQGSDGDVRTTQTSFDSIDDK------SQ---KeldpfelnNKFDKMVESIKNQENplnesdlqt 140
                 3333333333333333333222211111.11111111111111111111111111......11...111233333222222233333333333333333 PP

       CDC45 196 ..p 196
                    
  CCD26477.1 141 llL 143
                 331 PP

>> DUF2457  Protein of unknown function (DUF2457)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6  18.0   0.00072       1.8      42      95 ..      46     100 ..      26     166 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.00072
     DUF2457  42 LgeeaeeEaeeeeeee.eddeedeeddddddddedddedddeedededddstved 95 
                 Lg  +e+E ee+ +   e ++edee++ddd++ded++++++  d d    +t+ d
  CCD26477.1  46 LGGIVEDEVEENLDPIeEVEDEDEEEEDDDENDEDEENENQGSDGDVRTTQTSFD 100
                 4445555555544333233333333333333333333333333333322222222 PP

>> NOA36  NOA36 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  13.3    0.0017       4.3     252     302 ..      33      85 ..       7      97 .. 0.53

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.0017
       NOA36 252 edsdydaylkalasg..ddeddegdedddddddeedddeeeddedeeeeeeee 302
                  +s+y+++ +a+  g   +++ e++ d  ++ ++ed++ee+dde++e+ee+e+
  CCD26477.1  33 VASEYEEKIEAFPLGgiVEDEVEENLDPIEEVEDEDEEEEDDDENDEDEENEN 85 
                 45556665555554433222222233333444444444444444444333333 PP

>> PI3K_1B_p101  Phosphoinositide 3-kinase gamma adapter protein p101 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   8.5    0.0026       6.7     300     379 ..      49     128 ..      12     192 .. 0.55

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0026
  PI3K_1B_p101 300 ilekeselaspeeledeeeedeedvdeeedleeeeeeeeedslarsstlstvsss..skdsmlsllslsssslassvsslss 379
                   i+e e+e++    +e+e e++ee+ d+e+d +ee+e++ +d  +r++++s  s +  s+   l+   l ++   ++v s+++
    CCD26477.1  49 IVEDEVEENLDPIEEVEDEDEEEEDDDENDEDEENENQGSDGDVRTTQTSFDSIDdkSQKE-LDPFELNNKF-DKMVESIKN 128
                   6666666555555555555555555566666655555555555555555554444114332.3333343333.334444443 PP

>> Vfa1  AAA-ATPase Vps4-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  11.9   0.00094       2.4      52     152 ..       9     122 ..       2     141 .. 0.47

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00094
        Vfa1  52 pivdeeeeeaakkkkeleeeiekvkkeyeekqkkkkekekkk...................kekd..kkdkdkkkekekdkkkekekeeekkkelkkae 129
                  + ++++++++++   ++  +e +k+e+ ++ ++k e+                          +  ++++++++e+++d+++e++ ++   ++++++ 
  CCD26477.1   9 EMEKKNSASERNH---SKPFVEMLKREVASEYEEKIEA---FplggivedeveenldpieeV--EdeDEEEEDDDENDEDEENENQGSDGDVRTTQTSF 99 
                 3333333332222...3333344444444433333322...122344554444445555331..22222333333333333333333556666666666 PP

        Vfa1 130 eeleekeeprvkkykLhkefyqs 152
                 +++++k++++   ++L+++f ++
  CCD26477.1 100 DSIDDKSQKELDPFELNNKFDKM 122
                 6666689999999****998655 PP

>> Nop14  Nop14-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  21.7    0.0034       8.6     303     430 ..      13     146 ..       1     176 [. 0.37

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.0034
       Nop14 303 eeekkkkkkkeasaDdldddfvleeeeeeeefglgkglkataeeeeeededdfeedddlveseseeee..eeeeedeeeeedeeeee.eeeededdlsd 398
                 +++ ++++++++  + l+ +   e ee+ e+f lg  ++  +   e+e++ d +e+   ve+e+eeee  +e++edee+e++ ++++      +     
  CCD26477.1  13 KNSASERNHSKPFVEMLKREVASEYEEKIEAFPLGGIVE--D---EVEENLDPIEE---VEDEDEEEEddDENDEDEENENQGSDGDvRT--TQT---- 97 
                 333333333335555666666666666666666554443..1...22222222111...1222211110012222222222222222111..111.... PP

       Nop14 399 lese....eeeeedeleeel........leeekkaaeekkekk.........k 430
                    +    ++++++el+  +        +e+ k++++  +e +         +
  CCD26477.1  98 ---SfdsiDDKSQKELDPFElnnkfdkmVESIKNQENPLNE-SdlqtllltyT 146
                 ...12222333333332222211223311111111111111.13444444431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1959  (0.109264); expected 358.6 (0.02)
Passed bias filter:                      630  (0.0351386); expected 358.6 (0.02)
Passed Vit filter:                       104  (0.00580066); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.39
# Mc/sec: 1897.69
//
Query:       CCD26478.1  [L=193]
Description: hypothetical protein NDAI_0H03050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-32  109.9  11.6    6.2e-32  109.5  11.6    1.2  1  Osw5      Outer spore wall 5
  ------ inclusion threshold ------
      0.088   11.4   0.1        0.1   11.2   0.1    1.0  1  H_PPase   Inorganic H+ pyrophosphatase
       0.24   11.5   2.6       0.27   11.4   1.2    1.7  2  DsbG_N    Disulfide isomerase DsbG N-terminal
        1.7    6.9   5.2        2.1    6.6   5.2    1.1  1  DUF2070   Predicted membrane protein (DUF2070)


Domain annotation for each model (and alignments):
>> Osw5  Outer spore wall 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.5  11.6   1.4e-35   6.2e-32       1      70 []       6      75 ..       6      75 .. 0.98

  Alignments for each domain:
  == domain 1  score: 109.5 bits;  conditional E-value: 1.4e-35
        Osw5  1 tlyfliYlvlFliigviaslfilPLLgiSfifatgvvvfgFlSnltfklaqllyfktdkllkktlkkmad 70
                ++yf+iYlv+Flii++++s+fi+PLLg+Sfifa+gvv+fgF+Sn+tfklaq+lyf++d++lk+tlkkm++
  CCD26478.1  6 SVYFFIYLVIFLIIATASSIFIIPLLGTSFIFAVGVVTFGFISNVTFKLAQNLYFSADERLKSTLKKMSK 75
                58******************************************************************85 PP

>> H_PPase  Inorganic H+ pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   2.3e-05       0.1     361     438 ..       4      91 ..       1      98 [. 0.62

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.3e-05
                 HHHTHHHHHHHHHHH.HHHHHHH........HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH.HHHHHHT--SHHHHHHHHHHHHH CS
     H_PPase 361 mestvlpvlviavai.llsylla........glygialaavgmLstlgitlavdayGPiaDNAg.giaemseleeevreitdklDavG 438
                 + s+++ + ++++ i  ++ ++          +++++++++g++s +++ la + y       +  + +ms+  ++  ++t + D  G
  CCD26478.1   4 LASVYFFIYLVIFLIiATASSIFiipllgtsFIFAVGVVTFGFISNVTFKLAQNLYFSADERLKsTLKKMSKHTSSHNSKTKDKDKYG 91 
                 55555444333333303333332456665555********************999965444443145567777777777777777666 PP

>> DsbG_N  Disulfide isomerase DsbG N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.1   1.4e+04      29      44 ..      16      31 ..      16      34 .. 0.65
   2 ?   11.4   1.2     6e-05      0.27      51      88 ..      50      88 ..      48      89 .. 0.90

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 3.1
                EEEEE-TTT--EEEEE CS
      DsbG_N 29 lvvvedpstgqripll 44
                ++++   s+ + ipll
  CCD26478.1 16 FLIIATASSIFIIPLL 31
                5666677777777776 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 6e-05
                -EEE--.S----S-HHHHHHHHHHHHHHHHHHHHHHHHH CS
      DsbG_N 51 lvigls.nvfftknkedsklvesllkkvqnynkkqkdsa 88
                + + l+ n+ f+ ++ ++++++++ k ++++n k+kd+ 
  CCD26478.1 50 VTFKLAqNLYFSADERLKSTLKKMSKHTSSHNSKTKDKD 88
                566777799***************************986 PP

>> DUF2070  Predicted membrane protein (DUF2070)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.2   0.00046       2.1     133     198 ..       4      73 ..       1      83 [. 0.52

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.00046
     DUF2070 133 paliqpllailllvly..fspesfllllllslifalavylf..ivvvdrplkrnlgvsaldllsaFlahi 198
                 +a+++ ++++++++++   s+ ++++ll +s+ifa++v+ f  i  v+ +l +nl +sa + l++ l+ +
  CCD26478.1   4 LASVYFFIYLVIFLIIatASSIFIIPLLGTSFIFAVGVVTFgfISNVTFKLAQNLYFSADERLKSTLKKM 73 
                 3444444444444444554455677777777777666655411444444455555566555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1668  (0.0930336); expected 358.6 (0.02)
Passed bias filter:                      703  (0.0392102); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.28s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 1247.21
//
Query:       CCD26479.1  [L=305]
Description: hypothetical protein NDAI_0H03060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.9e-14   52.2   2.7    5.2e-14   51.7   2.7    1.1  1  Ribophorin_II  Oligosaccharyltransferase subunit Ribophorin I


Domain annotation for each model (and alignments):
>> Ribophorin_II  Oligosaccharyltransferase subunit Ribophorin II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   2.7   2.9e-18   5.2e-14     486     628 ..     152     301 ..     148     304 .. 0.82

  Alignments for each domain:
  == domain 1  score: 51.7 bits;  conditional E-value: 2.9e-18
  Ribophorin_II 486 LivGDavlenpilwnvadvelkfpeeeekakkkk...kkslykpkpeIkHlFRepekrPpkvvsntFtaLvllPllillvlwlklg.vNlsnfpfs 577
                    Liv+D ++e++ +  v   +l   ++  +  ++k   + ++ + k+eI ++F e  k+ + ++s++F++L+ +  l+ll+ w   g + ++n+p++
     CCD26479.1 152 LIVADESFESQDNLFVPIFDLFIVNNVIQDDNNKilnDPERLGAKEEIRYTFAESPKTVSPFLSYIFMGLITFATLVLLISWSSSGaIKFDNLPSG 247
                    788888888776666666666666555544444467799999******************************************99459******* PP

  Ribophorin_II 578 ...lsailFhlglgaillLyvlFWlkLnmftTlkyLallgiftflvGnrlLssl 628
                       ++ ++F +++++  +++  ++l  ++f+Tl + + lg++ ++vG + L+s+
     CCD26479.1 248 ldfIYFLVFLGAIVGFEYIFSKYYLGSTIFDTLHAAFYLGVLGLIVGTKFLRSV 301
                    55555555555555555788899*****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2235.32
//
Query:       CCD26480.1  [L=173]
Description: hypothetical protein NDAI_0H03070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.5e-08   32.4   0.1    1.4e-07   31.4   0.0    1.6  2  Peptidase_S24  Peptidase S24-like
     0.0078   16.0   0.0       0.11   12.3   0.0    2.3  2  Peptidase_S26  Signal peptidase, peptidase S26


Domain annotation for each model (and alignments):
>> Peptidase_S24  Peptidase S24-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.5e-11   1.4e-07       3      60 ..      37     100 ..      35     111 .. 0.87
   2 ?   -1.8   0.0      0.36   3.2e+03      24      35 ..     135     146 ..     102     154 .. 0.60

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.5e-11
                    XSSTTCCTXX.TTXEEEEECTS....---TTSEEEEEETTCE.-EEEEEEEEETTEEEEE.SST CS
  Peptidase_S24   3 pGdSMeptll.dGdlilVdkfs....epkrGdivvfrlpgee.eayiKrviglpgdrvllasnn 60 
                    +G+SM ptl  ++d++ V+k        + Gd++v+  p ++   ++Kr+ g+pgd +++  ++
     CCD26480.1  37 KGESMIPTLSaSNDYVHVSKRCrdgdHCEMGDVIVAVKPTDPnHRICKRITGMPGDFIRIDPSS 100
                    7********6489******9999999***************999***************77555 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.36
                    ---TTSEEEEEE CS
  Peptidase_S24  24 epkrGdivvfrl 35 
                     +++G ++++++
     CCD26480.1 135 ALIKGKVIAAND 146
                    445666666655 PP

>> Peptidase_S26  Signal peptidase, peptidase S26
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.033     3e+02      51      65 ..      81      95 ..      47     100 .. 0.70
   2 !   12.3   0.0   1.2e-05      0.11      99     133 ..     107     141 ..      98     144 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.033
  Peptidase_S26 51 pllKrVlalagqevc 65
                    + Kr+ +++g+ + 
     CCD26480.1 81 RICKRITGMPGDFIR 95
                   466777777777665 PP

  == domain 2  score: 12.3 bits;  conditional E-value: 1.2e-05
  Peptidase_S26  99 vlaegelfllskevadSfDsRYfGpvpassvigva 133
                    ++++g++++ +++ ++S+DsR +  +p + + g++
     CCD26480.1 107 QVPKGHVWITGDNLSHSLDSRSYNALPMALIKGKV 141
                    689********************999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       342  (0.0190752); expected 358.6 (0.02)
Passed bias filter:                      282  (0.0157287); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1295.92
//
Query:       CCD26481.1  [L=376]
Description: hypothetical protein NDAI_0H03080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      7e-12   46.5   0.0    1.2e-11   45.7   0.0    1.5  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
    4.2e-07   30.0   0.0    8.2e-07   29.1   0.0    1.5  1  ADH_zinc_N    Zinc-binding dehydrogenase
  ------ inclusion threshold ------
      0.045   13.3   0.0      0.086   12.4   0.0    1.4  1  LDcluster4    SLOG cluster4 family
      0.052   13.4   0.0       0.12   12.3   0.0    1.7  1  ADH_N         Alcohol dehydrogenase GroES-like domain


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   2.8e-15   1.2e-11      11     133 .]     242     372 ..     218     372 .. 0.75

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 2.8e-15
                   STTHHHHH-TT-EEEEEES-HHHHH.HHHHHHE...EEEEEEEE----..............S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHH CS
  ADH_zinc_N_2  11 tedfeaatggegvDvvldtvggealleaslkvl...pggGrlvsiggpp.............lsaallkpakkrkgrsvkyeflfsmkasaqadile 91 
                   t+df+    g+++D+++d+vg+ +++    ++l   + +  +v++ gp               s+  ++++ ++  rs++y+ +f+      +  ++
    CCD26481.1 242 TPDFA----GKKFDLIFDSVGTSEFYPVMGEFLkprSENSYYVTVVGPKkperftaremmslYSFS-APVRTFNPWRSFNYKGIFD-F--PSKIYMD 330
                   55663....788*********999989999***763333557999987455666666666642222.2222224445566666664.3..3344478 PP

                   HHHHHHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  92 elaalieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                     a+++  G+++p vd+v+++ee +eA+++l sg ++GK+V+
    CCD26481.1 331 LAARMLTLGRFTPKVDSVYKFEEFQEAIDKLLSGNVKGKVVI 372
                   999**************************************7 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.8e-10   8.2e-07       4     100 ..     188     294 ..     185     304 .. 0.81

  Alignments for each domain:
  == domain 1  score: 29.1 bits;  conditional E-value: 1.8e-10
                 HHHHHHHHHTT-..EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHT.....TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSC...T CS
  ADH_zinc_N   4 laavqlAkalGa..eviavdsseeklelakklGadevinykea.dlverikelt.....ggegvdvvfecvGsgatleaalkllkpgGrlvvvGg...g 91 
                  + vq+Ak      +v++++ss+   e  k+ G d+++ y++   + + ++el       g+++d++f+ vG+ + ++   ++lkp+    ++ +   +
  CCD26481.1 188 NCFVQIAKNQLHigTVVGICSSKA-MEENKQAGFDYTVPYDQGdGFIANLRELMktpdfAGKKFDLIFDSVGTSEFYPVMGEFLKPRSENSYYVTvvgP 285
                 689*****66656**********7.9**************88878************99899****************999999998653222222225 PP

                 SSEEEEEHH CS
  ADH_zinc_N  92 kgeeefdlr 100
                 k++e f++r
  CCD26481.1 286 KKPERFTAR 294
                 655556655 PP

>> LDcluster4  SLOG cluster4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.9e-05     0.086      26      82 ..     168     226 ..     164     241 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
  LDcluster4  26 GrliAkegavlltGgrtGvmeaaskGakea..gGltvGilpassekehsnkyvdiiiyT 82 
                 G++  k+ ++l+ G+ t+v+++  + ak++   G++vGi  ++  +e++++ +d+ ++ 
  CCD26481.1 168 GQVWNKNSMILVYGASTSVSNCFVQIAKNQlhIGTVVGICSSKAMEENKQAGFDYTVPY 226
                 66667999******************9986336*********99999988888887765 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.6e-05      0.12       2      60 ..      35      95 ..      34     117 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 2.6e-05
                TEEEEEEEEEEE-HHHH..HHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS.--TT-EEE CS
       ADH_N  2 gevlikvkaagiCgsDl..hilkggkelevklplilGHEivGeveevgpevkk.lkvGdrVv 60
                +e++i+v+aa+i+  D+  h l   ++++++     G + +G++   g +v   + +Gd+V 
  CCD26481.1 35 NEIVIEVHAASINPIDVglHELAF-AKISTSKAKGYGQDYSGVIIRKGVKVAPiWDIGDNVN 95
                89**************96566666.6777777779****************9999****995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       381  (0.0212505); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2685.15
//
Query:       CCD26482.1  [L=372]
Description: hypothetical protein NDAI_0H03090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      7e-14   53.0   0.0    1.2e-13   52.3   0.0    1.4  1  ADH_zinc_N_2    Zinc-binding dehydrogenase
      1e-08   35.2   0.0      2e-08   34.3   0.0    1.4  1  ADH_zinc_N      Zinc-binding dehydrogenase
  ------ inclusion threshold ------
       0.03   14.8   0.0      0.094   13.2   0.0    1.8  2  Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domai


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0     2e-17   1.2e-13      17     133 .]     241     368 ..     215     368 .. 0.75

  Alignments for each domain:
  == domain 1  score: 52.3 bits;  conditional E-value: 2e-17
                   HH-TT-EEEEEES-HHHHH.HHHHHHE.EEE..EEEEE----...............S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHHH CS
  ADH_zinc_N_2  17 atggegvDvvldtvggealleaslkvl.pgg..Grlvsiggpp..............lsaallkpakkrkgrsvkyeflfsmkasaqadileelaal 96 
                   + +g+++D+++d+vg+ +++  ++++l p++    ++++ g++              lsa l++ +  +   s++y+ +f + +  ++d ++  a++
    CCD26482.1 241 EFSGKKFDLIFDSVGNSEFFPVIHEFLkPKCdnSYYLTVVGDVkvtyeapslirmasLSAPLRMYNP-W--SSFNYKAFF-VPP--RKDWMDFAARM 331
                   456899*********999*9*******8665323358888888999997776664433333333333.3..555566666.444..6888******* PP

                   HHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  97 ieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   i   +++p +d+vf++ee ++A+++l+s++a+GK+V+
    CCD26482.1 332 ITLDRFTPQIDSVFKFEEFQDALKRLRSNKAKGKVVI 368
                   ************************************7 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   3.3e-12     2e-08       4      82 ..     185     270 ..     182     281 .. 0.92

  Alignments for each domain:
  == domain 1  score: 34.3 bits;  conditional E-value: 3.3e-12
                 HHHHHHHHHTT-..EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHT.....TTSSEEEEEESSCSHHHHHHHHHCEEEE CS
  ADH_zinc_N   4 laavqlAkalGa..eviavdsseeklelakklGadevinykea.dlverikelt.....ggegvdvvfecvGsgatleaalkllkpg 82 
                  + vq+Ak      +v++++ss++ +e+ kk+G d+++ y+e     + +++l       g+++d++f+ vG+ + ++   ++lkp+
  CCD26482.1 185 NCFVQIAKNQLHvgTVVGICSSKS-AEYNKKMGYDYTVSYDEGdGTISNLRKLMetpefSGKKFDLIFDSVGNSEFFPVIHEFLKPK 270
                 689*****777669*********8.9**************88888********9***99899****************999999986 PP

>> Semialdhyde_dh  Semialdehyde dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.6   9.4e+03      72      93 ..      63      84 ..      61      85 .. 0.84
   2 ?   13.2   0.0   1.6e-05     0.094       1      91 [.     173     271 ..     173     290 .. 0.76

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.6
                    E-SCHHHHHHHHHHHHHTTSEE CS
  Semialdhyde_dh 72 lalpagvskelapklaeagvkv 93
                    +++p+g+s+++   ++ +g+ v
      CCD26482.1 63 SSTPKGYSRDYSGIIIRKGAEV 84
                    6899****99999998888866 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 1.6e-05
                     EEEEETTTSHHHHHHHHHHHCTSSEEEEEEEESTT..TTTSBHHHHSG...GGTTTECEBEEE....GGGGGC..TT-SEEEE-SCHHHHHHHHH CS
  Semialdhyde_dh   1 kvaivGatGyvGqellrlLeehpevelvvllsssr..saGkklaeavk...aleegkdlkved....vdeeel..kevdivflalpagvskelap 84 
                     ++ ++Ga+  v   ++++ +++ +v  vv + ss+  +  kk+   +        + d ++++    +++ e+  k+ d++f +++++   ++ +
      CCD26482.1 173 RILVIGASTSVSNCFVQIAKNQLHVGTVVGICSSKsaEYNKKMGYDYTvsyD---EGDGTISNlrklMETPEFsgKKFDLIFDSVGNSEFFPVIH 264
                     578******************8888766655555524667777777775543...44444444333656666678*******************9 PP

                     HHHHTTS CS
  Semialdhyde_dh  85 klaeagv 91 
                     ++++ ++
      CCD26482.1 265 EFLKPKC 271
                     9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      358  (0.0199677); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2576.94
//
Query:       CCD26483.1  [L=382]
Description: hypothetical protein NDAI_0H03100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.6e-13   50.7   0.0    6.6e-13   49.9   0.0    1.5  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
      2e-08   34.3   0.0    2.3e-07   30.9   0.0    2.2  2  ADH_zinc_N    Zinc-binding dehydrogenase


Domain annotation for each model (and alignments):
>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   7.4e-17   6.6e-13      13     133 .]     251     378 ..     225     378 .. 0.84

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 7.4e-17
                   THHHHH-TT-EEEEEES-HHHHH.HHHHHHE...EEEEEEEE----............S-EEE-CHHHCTTT-EEEE--GGG...-.-HHHHHHHHH CS
  ADH_zinc_N_2  13 dfeaatggegvDvvldtvggealleaslkvl...pggGrlvsiggpp...........lsaallkpakkrkgrsvkyeflfsmkasaqadileelaa 95 
                   +f   + g+++D++ d+vg+ +++  + ++l   + +  +v+++g             + +  +++++++  r+++y+ ++ ++++ qa  ++   +
    CCD26483.1 251 EF---V-GKKFDLICDSVGTSEFFPVIQEFLkprNENSYYVTVSGNEkydyknptlgnFVTISGPVRRFNPWRTFNYKGII-VSPN-QAY-MDLGNR 340
                   33...3.688*********99999*******963233557999966679********977777777777888*********.9***.999.****** PP

                   HHHHHH----EEEEEEGGGHHHHHHHHHSS--SSEEEE CS
  ADH_zinc_N_2  96 lieeGklrpvvdrvfpleeaaeAhrylesgrarGKiVl 133
                   +i  G++ p++d+v+++ee +eA+++l+s+ra+GK+V+
    CCD26483.1 341 MITLGRFAPRIDSVYKFEEFQEAIDRLRSNRAKGKVVI 378
                   *************************************7 PP

>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.047   4.2e+02      39      85 ..     133     177 ..     118     178 .. 0.77
   2 !   30.9   0.0   2.5e-11   2.3e-07       2     100 ..     193     298 ..     192     321 .. 0.84

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.047
                 EETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEEEEEE CS
  ADH_zinc_N  39 inykeadlverikeltggegvdvvfecvGsgatleaalkllkpgGrl 85 
                 i+  + ++ ++i++  g++  d+v +++  + ++ +a+++l ++G++
  CCD26483.1 133 IDVGK-KVPDEIEDRSGTKRDDFVKNAAW-PLVFGTAYSCLMEQGQV 177
                 55555.78888999996655566666555.*************9986 PP

  == domain 2  score: 30.9 bits;  conditional E-value: 2.5e-11
                 HHHHHHHHHHHTT-..EEEEEESSHHHHHHHHHTTESEEEETTTC.HHHHHHHHHT.....TTSSEEEEEESSCSHHHHHHHHHCEEEEEEEEECSCTS CS
  ADH_zinc_N   2 vGlaavqlAkalGa..eviavdsseeklelakklGadevinykea.dlverikelt.....ggegvdvvfecvGsgatleaalkllkpgGrlvvvGggk 92 
                 v  ++vq+Ak      +v++++ss++ l + k++G d+++ y++   + + ++el       g+++d++ + vG+ + ++   ++lkp+    ++ +++
  CCD26483.1 193 VSNCLVQIAKNQLHvgTVVGICSSKS-LTYNKEIGFDYTVAYDQGdGFIANLRELMktpefVGKKFDLICDSVGTSEFFPVIQEFLKPRNENSYYVTVS 290
                 7789******777669*********8.***************88878*********99998688***********************986666665555 PP

                 SEEEEEHH CS
  ADH_zinc_N  93 geeefdlr 100
                 g+e++d +
  CCD26483.1 291 GNEKYDYK 298
                 55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       425  (0.0237046); expected 358.6 (0.02)
Passed bias filter:                      395  (0.0220313); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 2914.54
//
Query:       CCD26484.1  [L=595]
Description: hypothetical protein NDAI_0H03110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-35  121.4   0.2    5.1e-35  119.5   0.0    2.1  2  Nup35_RRM    Nup53/35/40-type RNA recognition motif
     0.0033   17.4   0.0      0.012   15.5   0.0    2.0  1  Nup35_RRM_2  Nup53/35/40-type RNA recognition motif


Domain annotation for each model (and alignments):
>> Nup35_RRM  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0   5.7e-39   5.1e-35       8     101 .]     302     410 ..     290     410 .. 0.95
   2 ?   -2.4   0.0      0.51   4.6e+03      32      51 ..     421     440 ..     417     466 .. 0.75

  Alignments for each domain:
  == domain 1  score: 119.5 bits;  conditional E-value: 5.7e-39
                 X-EEEE-S-GGGHHHHHHHHHTTS-BSS--CCC---------...............---EETTEEEEEBS-HHHHHHHHTTTTEEETTEEEEEEE--H CS
   Nup35_RRM   8 tsvivFGfpesianevlehFskfGeiledvqvlklgkglnpk...............piptgenwvkltYksessaskAlqengtilngslivgvsysk 91 
                   +ivFG+pesi+n++++hF++fG+iled+ vl++  g+n +               pi+tg++wvkltY++ ssas+Alqengt++ gsli++++y+k
  CCD26484.1 302 AAIIVFGYPESISNSIITHFAHFGTILEDFDVLRSISGINLStlrnrskdskyvkkyPIFTGDGWVKLTYENSSSASRALQENGTVFSGSLIGCIPYTK 400
                 34**************************************999******************************************************** PP

                 HHHHHS--XX CS
   Nup35_RRM  92 aaakqliekk 101
                 aa++ql+++k
  CCD26484.1 401 AAVEQLASCK 410
                 *******996 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.51
                 -BSS--CCC----------- CS
   Nup35_RRM  32 eiledvqvlklgkglnpkpi 51 
                 +i++d +++++  +l++++ 
  CCD26484.1 421 NIISDSNIINKETNLTSNNN 440
                 57888888888888887743 PP

>> Nup35_RRM_2  Nup53/35/40-type RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-06     0.012       3      53 .]     303     381 ..     302     381 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-06
  Nup35_RRM_2   3 wvaVsGydtelielVlehFasfGeIvk.hyvp...........................kevsvmyvkfesekdaekAL 53 
                  +++V Gy+ +  + ++ hFa+fG I + ++v                             +  ++ +++e++ +a +AL
   CCD26484.1 303 AIIVFGYPESISNSIITHFAHFGTILEdFDVLrsisginlstlrnrskdskyvkkypifTGDGWVKLTYENSSSASRAL 381
                  79***********************997444455556666677787777777777777766677777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1545  (0.0861732); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.26s 00:00:00.87 Elapsed: 00:00:00.40
# Mc/sec: 4424.73
//
Query:       CCD26485.1  [L=796]
Description: hypothetical protein NDAI_0H03120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
      0.025   14.4   0.1       0.15   11.8   0.1    2.2  2  RVP_2     Retroviral aspartyl protease


Domain annotation for each model (and alignments):
>> RVP_2  Retroviral aspartyl protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   8.4e-06      0.15      42     125 ..      96     179 ..      85     190 .. 0.81
   2 ?   -1.7   0.0      0.12   2.2e+03      53      77 ..     280     304 ..     272     312 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.4e-06
       RVP_2  42 sHsFiskafvsklklkveaLstpllietPvgssvtakeicksveieiqgiefladlilLdlkdlDviLgmdWLsknkanid.cae 125
                   s+i  +   +l l+   L+tpl+  +  + +  +++  +++e +i + + +a li Ld +++  iL + +Ls+n  +++ c++
  CCD26485.1  96 HKSYIELKKEDSLYLEKYPLKTPLCDRSTDSITTESDHAIEQCE-DITDCSTVATLIALDNSHFKNILAVRYLSSNIYQLNfCFN 179
                 4688888888889999999*****99888555555666777776.9*****************************9988874555 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 0.12
       RVP_2  53 klklkveaLstpllietPvgssvta 77 
                 + +l+  aL t++l+++P + + ++
  CCD26485.1 280 RTGLALTALGTDILVDAPFEMNSSS 304
                 5789999***********7665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       646  (0.036031); expected 358.6 (0.02)
Passed bias filter:                      394  (0.0219756); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.26s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 5737.67
//
Query:       CCD26486.1  [L=278]
Description: hypothetical protein NDAI_0H03130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-43  145.7   0.4    1.2e-42  145.3   0.4    1.1  1  PNK3P     Polynucleotide kinase 3 phosphatase


Domain annotation for each model (and alignments):
>> PNK3P  Polynucleotide kinase 3 phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.3   0.4   6.9e-47   1.2e-42       1     162 []      49     278 .]      49     278 .] 0.91

  Alignments for each domain:
  == domain 1  score: 145.3 bits;  conditional E-value: 6.9e-47
       PNK3P   1 kiaaFDlDstliktks.gkefakdaddwkllses.......vlekLkkl.keeg.ykivifsNqggvvek.ktkkslekfkekieallkel...dvp.. 83 
                 +i+ FDlD+t+ik+ks ++ fa++++dw++++ s       +l++L +  k+++  +ivifsNqgg+v+   t+ks+ kf++k++ +lk++   dv+  
  CCD26486.1  49 NIYGFDLDHTVIKPKSpNSRFARSSTDWQFMTYSknshsksTLQTLFEIvKNDPlGQIVIFSNQGGIVAIpPTSKSCIKFTDKVQLFLKAIseqDVEkk 147
                 6899************9*************998888998888899988845555889***********9989*******************76544488 PP

       PNK3P  84 ....llvyaatkk.............................................dkyRKPetGmweelkkdlee.....kleidkeks....... 121
                     +++yaa+k+                                             d +RKP++Gm++e++kd++      ++ei+   +       
  CCD26486.1 148 linnIWIYAAPKQpaslfksrklksatikgkvtkslnvgnesiskststttvltpelfDSMRKPNIGMFKEFEKDFKLlvgniSTEIK---Ctgqlvwi 243
                 9999*************************************************************************98664434444...23446777 PP

       PNK3P 122 fyvGDaagrklkkkkkkdfsdsDkkfAenvgikFktPeefF 162
                 +y+GDaagr      ++dfsdsDkkfA+n g+ FktPee+F
  CCD26486.1 244 YYCGDAAGR------SNDFSDSDKKFAKNCGVDFKTPEEIF 278
                 9********......************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       524  (0.0292264); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2177.29
//
Query:       CCD26487.1  [L=275]
Description: hypothetical protein NDAI_0H03140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.12   12.8   0.4       0.37   11.3   0.4    1.9  1  EDS1_EP   Enhanced disease susceptibility 1 protein EP domain


Domain annotation for each model (and alignments):
>> EDS1_EP  Enhanced disease susceptibility 1 protein EP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.4   2.1e-05      0.37      71      89 ..     160     178 ..     142     197 .. 0.86

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.1e-05
     EDS1_EP  71 lvEPLdiAeYyrkgkkgdY 89 
                 ++ PLd+AeYyr + + +Y
  CCD26487.1 160 ILNPLDVAEYYRMNPNDQY 178
                 679***********99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2155.58
//
Query:       CCD26488.1  [L=155]
Description: hypothetical protein NDAI_0H03150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.4e-14   54.1   0.0    8.8e-14   51.6   0.0    1.8  1  Ribosomal_S8  Ribosomal protein S8


Domain annotation for each model (and alignments):
>> Ribosomal_S8  Ribosomal protein S8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   4.9e-18   8.8e-14       2     126 ..       5     154 ..       4     154 .. 0.84

  Alignments for each domain:
  == domain 1  score: 51.6 bits;  conditional E-value: 4.9e-18
                   HHHHHHHHHHHHHHTT-SEEEEE--HHHHHHHHHHHHCTSEEEEEEECCC............CCC....EEEEE-BSSS-SBSSSEEEE-SBTTC-- CS
  Ribosomal_S8   2 piadmltrirNaekakkeevevpasklkeeilkvLkeeGyikdfeveeek............kkk....ikielkynkkkksvikklkrvskpgrrv 82 
                    +a+++++++N ++++ + +++p+++l+ + +  L ++G+i++ +  +++            + +    + i lky++ +k+v+++++ +skp +r+
    CCD26488.1   5 RLANTCAHLQNCSRVRTTLTSIPYTQLQLQFAYTLYKQGFISSLQKGSTNgpdtsyvevtpdN-IssrrLWIGLKYRD-NKPVLSSCQLISKPKLRI 99 
                   589******************************************964446888777666650.15566*********.79**************** PP

                   EE-CCC---CGGGTSE...........EEEEETTEEEEHHHHHHCT--EEEEEEE CS
  Ribosomal_S8  83 YakvkelpkvlnglGi...........aivsTskGvmtdkeArkkkvGGevlayv 126
                     +v+e++ + +g  +           ++v T+  vm  +eA +++ GGe+l+ +
    CCD26488.1 100 TLQVREMKLICSGKSVrqikplqpgelMLVRTQGTVMDINEAISRNFGGEILCRI 154
                   ********999986532222222222278999999******************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       402  (0.0224218); expected 358.6 (0.02)
Passed bias filter:                      371  (0.0206927); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1246.76
//
Query:       CCD26489.1  [L=136]
Description: hypothetical protein NDAI_0H03160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-11   43.1  18.6    1.5e-10   41.7  16.6    2.0  2  ATG16           Autophagy protein 16 (ATG16)
      0.002   18.7   5.4      0.002   18.7   5.4    2.2  2  HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interac
     0.0029   18.1   8.5     0.0032   18.0   8.5    1.2  1  Fez1            Fez1
  ------ inclusion threshold ------
      0.021   14.2  18.5      0.032   13.6  16.1    2.2  2  GAS             Growth-arrest specific micro-tubule binding
      0.063   13.5  11.2      0.047   13.9   9.2    1.7  2  TMF_TATA_bd     TATA element modulatory factor 1 TATA binding
      0.099   12.7  16.5      0.032   14.2   6.5    2.7  3  TMF_DNA_bd      TATA element modulatory factor 1 DNA binding
       0.18   12.1   8.2       0.26   11.6   7.5    1.5  1  OmpH            Outer membrane protein (OmpH-like)
        0.3   11.6  13.8       0.49   10.9  13.8    1.4  1  APG6_N          Apg6 coiled-coil region
       0.34   11.0   4.8        1.1    9.4   4.8    1.8  1  zf-CRD          Cysteine rich domain with multizinc binding r
       0.71    8.9   8.0       0.89    8.6   8.0    1.0  1  Atg14           Vacuolar sorting 38 and autophagy-related sub
       0.89    8.4   5.1       0.92    8.3   5.1    1.0  1  LMBR1           LMBR1-like membrane protein
        1.4    7.3   8.4        1.5    7.2   8.4    1.0  1  Hemagglutinin   Haemagglutinin
        2.4    8.5  10.4         10    6.5   9.8    2.1  1  DUF641          Plant protein of unknown function (DUF641)
          3    8.2   8.6        2.4    8.5   5.5    2.5  2  ABC_tran_CTD    ABC transporter C-terminal domain
        3.9    8.2   8.7        1.1    9.9   3.4    2.6  3  SlyX            SlyX
        4.5    7.7   9.6        3.2    8.1   7.6    1.8  2  Ly49            Ly49-like protein, N-terminal region
        4.7    6.5   8.9        5.4    6.3   8.9    1.1  1  FAM76           FAM76 protein
        6.1    7.0  14.3        2.4    8.3   1.8    3.9  3  Cep57_CLD_2     Centrosome localisation domain of PPC89


Domain annotation for each model (and alignments):
>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.2      0.21   2.1e+02       4      23 ..       7      25 ..       5      50 .. 0.78
   2 !   41.7  16.6   1.5e-13   1.5e-10     118     200 .]      47     129 ..      33     129 .. 0.91

  Alignments for each domain:
  == domain 1  score: 2.0 bits;  conditional E-value: 0.21
       ATG16  4 aqLreRdarqekafaeliqa 23
                ++L+eRd   e+ f+el+q 
  CCD26489.1  7 EKLKERDVI-ESRFSELFQE 25
                789*****8.99***99997 PP

  == domain 2  score: 41.7 bits;  conditional E-value: 1.5e-13
       ATG16 118 lkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaLqlqlnqaEeklrklekENkeLveRWmkrkaqeAekmN 200
                 +++++  + +l++e  + e +lk+++e ++ ++k +++l DEl++ +++ n + ekl  l+kE ++Lv+RW+++ ++e + mN
  CCD26489.1  47 TENNRLIISKLRDELMEKEVELKRLQEVINVQDKNNEKLNDELITVNIENNILQEKLSSLNKEHNKLVQRWLAKVQHEVDTMN 129
                 4555556899************************************************************************9 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   5.4     2e-06     0.002      35      98 ..      35      98 ..       7      99 .. 0.90
   2 ?    1.6   0.2      0.43   4.3e+02      34      46 ..     101     113 ..      92     135 .. 0.42

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2e-06
  HIP1_clath_bdg 35 elerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLqaEkes 98
                    + ++++   +  +e+ +  + kL+ el++k+ el+rl++ ++ + + +e+l+ +l + + E++ 
      CCD26489.1 35 QQNNVQTAGKDVTENNRLIISKLRDELMEKEVELKRLQEVINVQDKNNEKLNDELITVNIENNI 98
                    4566777788889999***************************************999999876 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.43
  HIP1_clath_bdg  34 eelerlkeeaerk 46 
                     e+l +l++e+++ 
      CCD26489.1 101 EKLSSLNKEHNKL 113
                     3333333333222 PP

>> Fez1  Fez1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   8.5   3.2e-06    0.0032      20     109 ..      33     123 ..       9     136 .] 0.83

  Alignments for each domain:
  == domain 1  score: 18.0 bits;  conditional E-value: 3.2e-06
        Fez1  20 kdsqaevtqklseiva.lkaqlrelrakleekeeeikeleesleektlelevcenelqrkkseaellrekvekleeelkelreelselsle 109
                 k+ q++v + ++++ +  +  +  lr +l eke e+k+l+e ++ +++++e++++el   + e+++l+ek+++l++e ++l ++  ++ ++
  CCD26489.1  33 KQQQNNVQTAGKDVTEnNRLIISKLRDELMEKEVELKRLQEVINVQDKNNEKLNDELITVNIENNILQEKLSSLNKEHNKLVQRWLAKVQH 123
                 55677777777777752467788999***************************************************99997754443333 PP

>> GAS  Growth-arrest specific micro-tubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.47   4.7e+02     120     138 ..      10      28 ..       5      37 .. 0.78
   2 ?   13.6  16.1   3.2e-05     0.032      18      89 ..      44     115 ..      32     135 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.0 bits;  conditional E-value: 0.47
         GAS 120 kerdelykkfeaaiqevqq 138
                 kerd ++++f + +qev  
  CCD26489.1  10 KERDVIESRFSELFQEVDG 28 
                 6899999999999999865 PP

  == domain 2  score: 13.6 bits;  conditional E-value: 3.2e-05
         GAS  18 nditrnNLelIkslKeeieelkkkeernekelseisqenkrlkepLkkaeeeveeLrkqlknyekdkqslkn 89 
                 +d+t+nN  +I +l++e+ e++ + +r +  ++   ++n++l+++L +++ e++ L+++l   +k+ ++l +
  CCD26489.1  44 KDVTENNRLIISKLRDELMEKEVELKRLQEVINVQDKNNEKLNDELITVNIENNILQEKLSSLNKEHNKLVQ 115
                 79***************************************************************9998865 PP

>> TMF_TATA_bd  TATA element modulatory factor 1 TATA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       1.9   1.9e+03      40      72 ..      10      42 ..       5      50 .. 0.59
   2 ?   13.9   9.2   4.7e-05     0.047       8      79 ..      48     116 ..      43     133 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 1.9
  TMF_TATA_bd 40 aerdeareeivklmkeneelkelkkeleeleke 72
                 +erd +++   +l +e++  +  k++ +++++ 
   CCD26489.1 10 KERDVIESRFSELFQEVDGDALWKQQQNNVQTA 42
                 456666666666666666665555555555554 PP

  == domain 2  score: 13.9 bits;  conditional E-value: 4.7e-05
  TMF_TATA_bd   8 gpsvqlverlsseirrlEgElaslkeelerleaerdeareeivklmkeneelkelkkeleelekeleelqer 79 
                  +++  ++++l  e+ ++E+El+ l+e ++   ++ +++++e++++  en+ l+e+   l++l+ke ++l +r
   CCD26489.1  48 ENNRLIISKLRDELMEKEVELKRLQEVINVQDKNNEKLNDELITVNIENNILQEK---LSSLNKEHNKLVQR 116
                  678889*************************************999888665544...33444444443333 PP

>> TMF_DNA_bd  TATA element modulatory factor 1 DNA binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       4.8   4.8e+03       5      11 ..       7      13 ..       5      17 .. 0.73
   2 ?   14.2   6.5   3.2e-05     0.032      31      71 ..      50      90 ..      29      93 .. 0.92
   3 ?    5.2   0.5     0.021        21      38      68 ..      99     130 ..      95     135 .. 0.70

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 4.8
  TMF_DNA_bd  5 kklkeKD 11
                +klke+D
  CCD26489.1  7 EKLKERD 13
                6788888 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 3.2e-05
  TMF_DNA_bd 31 lnntikkLrkknkelekeikelkkkleklekeleeleerlk 71
                ++ +i+kLr ++ e e e+k+l++ ++ ++k+ e+l+++l 
  CCD26489.1 50 NRLIISKLRDELMEKEVELKRLQEVINVQDKNNEKLNDELI 90
                6789**********************************986 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.021
  TMF_DNA_bd  38 Lrkknkelekeikel.kkkleklekeleelee 68 
                 L++k++ l+ke ++l ++ l+k++ e++++++
  CCD26489.1  99 LQEKLSSLNKEHNKLvQRWLAKVQHEVDTMNA 130
                 66777777777777766777777777777665 PP

>> OmpH  Outer membrane protein (OmpH-like)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   7.5   0.00027      0.26      16     104 ..      42     127 ..      30     131 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00027
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS.-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        OmpH  16 egkaaqeqlekkfkklqaeleakekelqklqeelqkkakklekeekeqelqkkeqelqqkqqqkaqelqkkqqellkpildkinkaike 104
                 +gk++ e+    ++kl++el +ke el++lqe ++ + k+  +e+   el + + e +  +q+k   l+k+ ++l+++ l k++  ++ 
  CCD26489.1  42 AGKDVTENNRLIISKLRDELMEKEVELKRLQEVINVQDKN--NEKLNDELITVNIENNI-LQEKLSSLNKEHNKLVQRWLAKVQHEVDT 127
                 45555555555569********************976666..78889999999999999.99999*************99999988875 PP

>> APG6_N  Apg6 coiled-coil region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  13.8   0.00049      0.49      31     129 ..       5     135 ..       3     136 .] 0.78

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00049
      APG6_N  31 flkklkkekkeeek...............................qdeeleeleeeleklekeeeelleeLkelekereeleaelaaleeelealeeee 98 
                 f++klk++++ e++                               ++  + +l++el + e e ++l+e ++  +k++e+l++el +   e + l+e+ 
  CCD26489.1   5 FMEKLKERDVIESRfselfqevdgdalwkqqqnnvqtagkdvtenNRLIISKLRDELMEKEVELKRLQEVINVQDKNNEKLNDELITVNIENNILQEKL 103
                 7777777777766677777777777777765555555555555444555666667777777777788888888889*********************** PP

      APG6_N  99 erfwreyne.lqlelleleeeldsleaqyeha 129
                     +e+n+  q+ l++ + e d ++a +e +
  CCD26489.1 104 SSLNKEHNKlVQRWLAKVQHEVDTMNAHFERD 135
                 *********99****************99976 PP

>> zf-CRD  Cysteine rich domain with multizinc binding regions
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.8    0.0011       1.1      68     125 ..      76     131 ..      23     136 .] 0.82

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0011
      zf-CRD  68 pieekliekipeevlegneveqkilkdylaekgltlqdvlkevlekldkgelkrtrkk 125
                 ++++k +ek+ +e++  n +e +il++ l++ ++  +++++++l+k++++  ++++ +
  CCD26489.1  76 NVQDKNNEKLNDELITVN-IENNILQEKLSSLNKEHNKLVQRWLAKVQHEV-DTMNAH 131
                 357888888888888875.89**************************9665.666555 PP

>> Atg14  Vacuolar sorting 38 and autophagy-related subunit 14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.0    0.0009      0.89      35     150 ..       9     128 ..       5     134 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.0009
       Atg14  35 ksekeslkkkiekalegke....eaeqledkikn.kkakleelksliadlrerlqelkdklsqlkkeieekkkklaklsdklkkRrsdleslqneleer 128
                 ++e++ ++++++++ ++ +      +q+++++++  k+  e+ +  i++lr++l e +  l++l++ i+ + k+ +kl+d+l + + + + lq++l++ 
  CCD26489.1   9 LKERDVIESRFSELFQEVDgdalW-KQQQNNVQTaGKDVTENNRLIISKLRDELMEKEVELKRLQEVINVQDKNNEKLNDELITVNIENNILQEKLSSL 106
                 689999999999999998888743.44444444415566666777778888888888888888888888888888888888887777778888887777 PP

       Atg14 129 rkkqiaklqdaikrieqklssl 150
                  k++ + +q+ + ++++  +++
  CCD26489.1 107 NKEHNKLVQRWLAKVQHEVDTM 128
                 7777777777777777765555 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.1   0.00093      0.92     193     287 ..      38     120 ..      12     134 .. 0.63

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00093
       LMBR1 193 eiksdldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilk.kvPeeiaeklksnenkteeslaklekqlikalqkr 287
                 ++++  ++++++ ++ ++kl++e++e+e el+ l + ++ ++k+ +      k ++e+++ ++ ++i ++       +++sl+k++++l +++  +
  CCD26489.1  38 NVQTAGKDVTENNRLIISKLRDELMEKEVELKRLQEVINVQDKNNE------KLNDELITvNIENNILQE-------KLSSLNKEHNKLVQRWLAK 120
                 667788899999999***********99999944444444444433......334565553444433333.......4555555554444442222 PP

>> Hemagglutinin  Haemagglutinin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   8.4    0.0015       1.5     365     452 ..      35     123 ..      14     132 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0015
                    XHHHHHHHHHHHHHHHHHHHHHTTTEEEBXSSXXTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
  Hemagglutinin 365 dkkstqeainkitkkvnsliekenkqleavgkelnelekrieeldkkvddgfldvityniellvllenerildfedsnv.knleekvkk 452
                     ++  q a +++t++   +i k   +l     el +l++ i+  dk+ + +  ++it nie  +l e    l+ e +++ +    kv++
     CCD26489.1  35 QQNNVQTAGKDVTENNRLIISKLRDELMEKEVELKRLQEVINVQDKNNEKLNDELITVNIENNILQEKLSSLNKEHNKLvQRWLAKVQH 123
                    5678899*******************************9999999999999999**************999998776651455566665 PP

>> DUF641  Plant protein of unknown function (DUF641)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   9.8      0.01        10      83     126 ..      43      86 ..       1     116 [. 0.59

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.01
      DUF641  83 qrsllktyeitvkkleaelkakdseieeLkekLeeaeksnkkle 126
                  +++ +     ++kl+ el +k++e+++L+e ++ + k+n+kl+
  CCD26489.1  43 GKDVTENNRLIISKLRDELMEKEVELKRLQEVINVQDKNNEKLN 86 
                 34555566666666666666666666666666666666666654 PP

>> ABC_tran_CTD  ABC transporter C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       8.6   8.5e+03      53      53 ..      15      15 ..       6      27 .. 0.44
   2 ?    8.5   5.5    0.0024       2.4       9      65 ..      67     118 ..      33     120 .. 0.79

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 8.6
  ABC_tran_CTD 53 l 53
                  +
    CCD26489.1 15 I 15
                  2 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0024
  ABC_tran_CTD   9 eleeleaeIeaLEeeiaeleaeladpelysdpeklaelsaeleeleaeLeelyerWe 65 
                   el++l + I+  ++  ++l++el   ++     + + l+++l  l++e ++l +rW+
    CCD26489.1  67 ELKRLQEVINVQDKNNEKLNDELITVNI-----ENNILQEKLSSLNKEHNKLVQRWL 118
                   5666666666666666666666666664.....46779******************8 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.2       1.8   1.7e+03      28      28 ..      42      42 ..      15      69 .. 0.58
   2 ?    9.9   3.4    0.0011       1.1       4      50 ..      67     113 ..      64     120 .. 0.90
   3 ?   -1.1   0.0       3.1   3.1e+03      26      39 ..     118     131 ..     115     134 .. 0.52

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 1.8
                H CS
        SlyX 28 e 28
                +
  CCD26489.1 42 A 42
                2 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.0011
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXX CS
        SlyX   4 rleeLEiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkel 50 
                  l++L++ +  q++  e+Lnd+++  + +   lq++l  l+++ ++l
  CCD26489.1  67 ELKRLQEVINVQDKNNEKLNDELITVNIENNILQEKLSSLNKEHNKL 113
                 6899************************************9987665 PP

  == domain 3  score: -1.1 bits;  conditional E-value: 3.1
                 HHHHHHHHHHHHHH CS
        SlyX  26 vaeqqqqidrlqrq 39 
                 +a+ q+++d + ++
  CCD26489.1 118 LAKVQHEVDTMNAH 131
                 45555555555554 PP

>> Ly49  Ly49-like protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   2.0      0.33   3.2e+02      56      86 ..      55      84 ..      19      87 .. 0.60
   2 ?    8.1   7.6    0.0033       3.2      37     100 ..      62     123 ..      50     133 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.33
                XXXXXXXXXXXXXXXX..HHHHHHHHHHHHH CS
        Ly49 56 inlkeelLrnkslecsilkdlleslkreqkr 86
                ++l++el+ +k +e ++l++ ++ + ++ ++
  CCD26489.1 55 SKLRDELM-EKEVELKRLQEVINVQDKNNEK 84
                45667665.5778888888877766665554 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0033
                 XX.XXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXX..HHHHHHHHHHHHHHHHHHHTTTSXSXX CS
        Ly49  37 heleetlnlsqnysimq..ndinlkeelLrnkslecsilkdlleslkreqkrlysktktvlkslqn 100
                  e+e  l+  q+  ++q  n+ +l++el++   +e +il+++l+sl++e+++l+++    l ++q+
  CCD26489.1  62 MEKEVELKRLQEVINVQdkNNEKLNDELIT-VNIENNILQEKLSSLNKEHNKLVQR---WLAKVQH 123
                 444444444444444441156678888877.689*****************99877...3344444 PP

>> FAM76  FAM76 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   8.9    0.0054       5.4     199     286 ..      33     122 ..       6     134 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.0054
       FAM76 199 ekesnetskksldsnssdhlvavtqLkeeiaslkkqleqkdqellekdkkitelkaelleke...kelreklkelekeakekieklekkir 286
                 ++++n+ +++  d++ +++ + +++L++e+++ + +l++ ++++  +dk+  +l  el++ +   + l+ekl++l+ke+++ +++  +k++
  CCD26489.1  33 KQQQNNVQTAGKDVTENNR-LIISKLRDELMEKEVELKRLQEVINVQDKNNEKLNDELITVNienNILQEKLSSLNKEHNKLVQRWLAKVQ 122
                 3334444444556665555.56999999999999999999999999999999999998876411145789999999999998887777665 PP

>> Cep57_CLD_2  Centrosome localisation domain of PPC89
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.56   5.6e+02      31      47 ..      10      26 ..       6      28 .. 0.87
   2 ?    0.4  10.0      0.71   7.1e+02       4      50 ..      67     113 ..      54     113 .. 0.66
   3 ?    8.3   1.8    0.0024       2.4       4      35 ..     102     136 .]      92     136 .] 0.77

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.56
  Cep57_CLD_2 31 kERdsalrqLgvAyeel 47
                 kERd  +++ ++ ++e+
   CCD26489.1 10 KERDVIESRFSELFQEV 26
                 79****99999999997 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.71
  Cep57_CLD_2   4 evktLqnrLdsltrklqvheeelkrLnkERdsalrqLgvAyeelneL 50 
                  e k+Lq+  +  +  +++  +el ++n E++    +L++   e+n+L
   CCD26489.1  67 ELKRLQEVINVQDKNNEKLNDELITVNIENNILQEKLSSLNKEHNKL 113
                  44444555555555555555555555558888888888888888877 PP

  == domain 3  score: 8.3 bits;  conditional E-value: 0.0024
  Cep57_CLD_2   4 evktL.qnrLdsltrklqvheeelkrLnk..ERds 35 
                    ++L +++++ ++r l++ ++e +++n+  ERds
   CCD26489.1 102 KLSSLnKEHNKLVQRWLAKVQHEVDTMNAhfERDS 136
                  45667788888888888888888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1970  (0.109878); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 1039.95
//
Query:       CCD26490.1  [L=843]
Description: hypothetical protein NDAI_0H03170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.21   12.4   0.2       0.21   12.4   0.2    2.4  2  KMP11     Kinetoplastid membrane protein 11


Domain annotation for each model (and alignments):
>> KMP11  Kinetoplastid membrane protein 11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.5      0.54   9.7e+03      55      74 ..     439     456 ..     430     475 .. 0.61
   2 ?   12.4   0.2   1.2e-05      0.21      30      71 ..     604     646 ..     586     657 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.54
       KMP11  55 ikehtekfnkkmrehsehfk 74 
                 i++ te  n+k+++  e  k
  CCD26490.1 439 INNNTEEDNNKIQQNKE--K 456
                 55556665665555444..2 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 1.2e-05
       KMP11  30 ffadkpdeatlspemkehyekfek.mikehtekfnkkmrehse 71 
                 f++   +e t+sp+mk+h+++  k  ++e  ek+n++ ++  e
  CCD26490.1 604 FISRSFNENTISPNMKKHFQNELKiWLQEMDEKWNNNNNNANE 646
                 4445569************87555169*******998776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1797  (0.100229); expected 358.6 (0.02)
Passed bias filter:                      503  (0.0280551); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.69u 0.25s 00:00:00.94 Elapsed: 00:00:00.40
# Mc/sec: 6378.39
//
Query:       CCD26491.1  [L=229]
Description: hypothetical protein NDAI_0H03180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-25   86.5   0.7    9.3e-25   86.5   0.7    1.7  2  DnaJ      DnaJ domain


Domain annotation for each model (and alignments):
>> DnaJ  DnaJ domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.7   5.2e-29   9.3e-25       2      63 .]      22      82 ..      21      82 .. 0.98
   2 ?   -3.5   0.2      0.68   1.2e+04      28      42 ..     125     139 ..     122     143 .. 0.60

  Alignments for each domain:
  == domain 1  score: 86.5 bits;  conditional E-value: 5.2e-29
                HHHHHTSSTTG-HHHHHHHHHHHHHHHSTTTSCCHHHHHHHHHHHHHHHHHHTSHHHHHHHH CS
        DnaJ  2 yYeiLgvskdasedeIkkaYrklalkyHPDknpkdpeaeekFkeineAyevLsdpekRkqYD 63
                +YeiL+v+++++e+eIkkaYrkla+++HPDkn  +p+a+e+Fk in+A+evLsd+ekR+++D
  CCD26491.1 22 FYEILKVERTSTENEIKKAYRKLAIRLHPDKN-PHPKASEAFKIINRAFEVLSDNEKRRIFD 82
                8*******************************.999************************99 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.68
                 HSTTTSCCHHHHHHH CS
        DnaJ  28 yHPDknpkdpeaeek 42 
                 +HP   ++ ++ e+ 
  CCD26491.1 125 HHPAAATGFNQPEDI 139
                 778766665555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1745.13
//
Query:       CCD26492.1  [L=1667]
Description: hypothetical protein NDAI_0H03190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-70  237.4  19.6      2e-70  237.4  19.6    2.5  3  PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-t
    9.7e-23   79.6   1.6    9.7e-23   79.6   1.6    2.7  2  PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
    2.3e-14   53.3   0.0    8.1e-14   51.5   0.0    1.9  1  E1-E2_ATPase     E1-E2 ATPase
    6.8e-12   45.3   0.0    1.1e-10   41.5   0.0    2.9  3  Cation_ATPase    Cation transport ATPase (P-type)
    1.9e-11   44.6   0.3    5.4e-05   23.6   0.0    3.5  3  Hydrolase        haloacid dehalogenase-like hydrolase
     0.0063   16.3   0.2     0.0063   16.3   0.2    3.5  4  Hydrolase_3      haloacid dehalogenase-like hydrolase


Domain annotation for each model (and alignments):
>> PhoLip_ATPase_C  Phospholipid-translocating P-type ATPase C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   2.4         6   1.8e+04      39      70 ..     157     188 ..     142     204 .. 0.42
   2 ?    0.1   1.3      0.19   5.5e+02     181     243 ..     457     524 ..     435     530 .. 0.55
   3 !  237.4  19.6   6.6e-74     2e-70       2     249 .]    1258    1506 ..    1257    1506 .. 0.96

  Alignments for each domain:
  == domain 1  score: -5.1 bits;  conditional E-value: 6
  PhoLip_ATPase_C  39 Knvvftlvqfwfqfyngfsgqslyeswlltly 70 
                      K++   +  +   ++  +   +++ +w+ t +
       CCD26492.1 157 KQLYAQFSKLANVYFFLVAILQMIPGWSTTGT 188
                      33333333333333333333344444444333 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.19
  PhoLip_ATPase_C 181 iililg.sillyflfll.lyssllps...ssefygvleelfsspsfwlv.lllvvvvallpdllikvlk 243
                       +++++   +++f f+  ++++   +   ++  y   + +   ps+++  ++  +++ l + ++++++k
       CCD26492.1 457 AFMVFVvATISFFSFFGhVLNNRK-YidnNQAWYLRNQDVGVAPSIMAFiIMYNTMIPLSLYVTMEIIK 524
                      222222122333333322333322.13446666767777777777666625555666677777777776 PP

  == domain 3  score: 237.4 bits;  conditional E-value: 6.6e-74
  PhoLip_ATPase_C    2 raSDyaiaqFrfLkrLLlvhGrwsyrRisklilyffyKnvvftlvqfwfqfyngfsgqslyeswlltlynllftslpvivlgifdqdvsael 93  
                       r+SDy+i+qFrfL++LLlvhGr++y+R++k+il++fyK+++f+l+q+++q y++fsg+slye w+l+++n+lftslpv+++g+f++d++  +
       CCD26492.1 1258 RSSDYSIGQFRFLSKLLLVHGRYNYIRTAKFILCTFYKEITFYLTQLIYQRYTMFSGSSLYEPWSLSMFNTLFTSLPVLCIGMFEKDLKPMT 1349
                       89****************************************************************************************** PP

  PhoLip_ATPase_C   94 llkyPelYklgqknklfnlktfllwileglyqsliifflsylvlddssfsdgktndlqlfgtlvftalvlvvnlkval.etktwtliliili 184 
                       ll++PelY+ g+ ++ fnl  f+ w+++g+  +++i fl  +++++++    ++++++ +g++ fta+v +vn+k+++ e+k+ ++++++++
       CCD26492.1 1350 LLAVPELYSMGRLSEGFNLMIFIEWVIQGTAYAILITFLNCIIWGETAL---SDHTMYPLGLVNFTAIVALVNVKCQFiEMKNRNWLVFVSV 1438
                       ********************************************99975...99**********************988************* PP

  PhoLip_ATPase_C  185 lgsillyflfll...lyssllpsssefygvleelfsspsfwlvlllvvvvallpdllikvlkrtffps 249 
                       ++s++ ++++++   +++   + +   yg+++++ ++++fw+++l++ ++ + +d+++++lk +++p+
       CCD26492.1 1439 ILSCGGWLVWICalpILNRKDTIYDVPYGFYYQFGKDITFWCTCLVLALLPISLDIVYQTLKTMLWPT 1506
                       ***********834455555555999****************************************97 PP

>> PhoLip_ATPase_N  Phospholipid-translocating ATPase N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   1.6   3.2e-26   9.7e-23      10      67 .]     135     192 ..     119     192 .. 0.88
   2 ?    0.7   1.7      0.14   4.3e+02      17      32 ..    1281    1296 ..    1279    1313 .. 0.82

  Alignments for each domain:
  == domain 1  score: 79.6 bits;  conditional E-value: 3.2e-26
  PhoLip_ATPase_N  10 ekkkyasNkIsTsKYtlltFlpknLfeqFrrvaNlYFLviailqliPqisplspvtti 67 
                      +++ y+ N I++s+Yt+++F+pk+L+ qF+++aN+YF+++ailq+iP++s+++++tti
       CCD26492.1 135 TQSFYCPNTIRSSRYTIYSFFPKQLYAQFSKLANVYFFLVAILQMIPGWSTTGTYTTI 192
                      2569****************************************************97 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.14
  PhoLip_ATPase_N   17 NkIsTsKYtlltFlpk 32  
                       N+I+T+K+ l tF   
       CCD26492.1 1281 NYIRTAKFILCTFYKE 1296
                       9**********99765 PP

>> E1-E2_ATPase  E1-E2 ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   2.7e-17   8.1e-14      19     173 ..     298     526 ..     288     532 .. 0.93

  Alignments for each domain:
  == domain 1  score: 51.5 bits;  conditional E-value: 2.7e-17
                   EGGG--TTSEEEEETT-B--SEEEEEE.....E-SEEE-TTTS---S-EE-.............................................. CS
  E1-E2_ATPase  19 dakelvpGDivllkagdrvpaDgrive.....gsaevdesaLTGEslpvek.............................................. 64 
                   + k+l++GD +ll+ gd vpaD++++      +++ v++ aL GE     k                                              
    CCD26492.1 298 AWKDLHVGDFILLNCGDCVPADVILLTsdgdnSECFVETMALDGETNLKAKqphpelnkltssasglanvnalvtvedpnndlynfegnielttsqn 394
                   5699**********************977765555************************************************************** PP

                   ........G-TTEE-TT-EEEE.-EEEEEEEE-TTTSTTTTTSTTS--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-STTTSSTT....... CS
  E1-E2_ATPase  65 ........ekgdmvfsGtvvvs.geakavVtatgedtelgkiarlveeakskktplqkkldklgkvlvpvvlliallvflialllgksla....... 145
                              + v+ G+++ +  ++++ V+ tge+t++   ++++++++ k ++lqkk++ +++++v+vv +i+++ f+ ++l++++ +       
    CCD26492.1 395 ntlmkypvGPDNVVYRGSIIRNtENVIGMVIFTGEETKIR--MNALKNPRTKAPKLQKKINLIIAFMVFVVATISFFSFFGHVLNNRKYIdnnqawy 489
                   ****99999************97899***********998..7899**************************************9999989999999 PP

                   .........HHHHHHHHHHHHHS-TTHHHHHHHHHHH CS
  E1-E2_ATPase 146 .........eallralallvaaiPcaLplavplalal 173
                             +++ ++ +   +iP  L +++ ++ ++
    CCD26492.1 490 lrnqdvgvaPSIMAFIIMYNTMIPLSLYVTMEIIKVM 526
                   9999999999999999999999999999998887655 PP

>> Cation_ATPase  Cation transport ATPase (P-type)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   3.6e-14   1.1e-10      10      88 ..     744     842 ..     720     844 .. 0.85
   2 ?   -1.6   0.0      0.98   2.9e+03      35      64 ..    1039    1075 ..    1014    1095 .. 0.75
   3 ?   -1.5   0.0       0.9   2.7e+03      14      28 ..    1110    1124 ..    1098    1133 .. 0.87

  Alignments for each domain:
  == domain 1  score: 41.5 bits;  conditional E-value: 3.6e-14
  Cation_ATPase  10 ensekdevkllGnktEsALlvlaekl...................gldteelreetkkvqeipFnssrKrmsvvlkle.pekkvrlyvKGApeiil 85 
                    en++ + +  + +++E AL+ +a++l                   g  +    e++++++ i Fns+rKrmsv+++   + +kv+l++KGA ++il
     CCD26492.1 744 ENEKISIEYQSSSPDELALVTAARDLgyvvlnrnaniltiraypnGFANAPQLEDYEILNYIDFNSDRKRMSVLVRMAsEPNKVLLICKGADNVIL 839
                    777888888999**************88888887777777777776666666777*********************998899************** PP

  Cation_ATPase  86 krC 88 
                    +r 
     CCD26492.1 840 ERL 842
                    985 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.98
  Cation_ATPase   35 l.......gldteelreetkkvqeipFnssrKrmsvv 64  
                     l       ++d++e+++e+++ ++   n++ K+  v 
     CCD26492.1 1039 LfaykwidNEDYQEWEAEYHEAKTSLLNRKSKIDEVG 1075
                     0444447789999999999999999999999987665 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.9
  Cation_ATPase   14 kdevkllGnktEsAL 28  
                      + + l+G+k E+A+
     CCD26492.1 1110 IKMWMLTGDKRETAI 1124
                     57899*********8 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.1    0.0085        25       4      21 ..     563     580 ..     560     631 .. 0.78
   2 !   23.6   0.0   1.8e-08   5.4e-05     103     152 ..    1056    1127 ..     946    1158 .. 0.73
   3 !   11.9   0.0   6.6e-05       0.2     171     210 .]    1202    1243 ..    1172    1243 .. 0.80

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0085
                 EEEESBTTTBCHHHHHHH CS
                 xxxxxxxxxxxxxxxxxx RF
   Hydrolase   4 vvfDkdGTLttgepsved 21 
                 ++ Dk+GTLt+ ++  ++
  CCD26492.1 563 IFSDKTGTLTDNKMLFRK 580
                 889********9976655 PP

  == domain 2  score: 23.6 bits;  conditional E-value: 1.8e-08
                  H........................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHH CS
                  x........................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  103 l........................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpetaeraa 152 
                  +                        +  +l+  +i+d+  + +++ ea++++++agi++++ltgd +eta  + 
  CCD26492.1 1056 EyheaktsllnrkskidevggkieeNLTLLGATAIEDK--LQEGVSEAIEKIRRAGIKMWMLTGDKRETAINIG 1127
                  02222222222444444444555555599*********..*****************************97665 PP

  == domain 3  score: 11.9 bits;  conditional E-value: 6.6e-05
                  STTTSHHHHHHHHHHHT..STGGGEEEEESSHHHHHHHHHTT CS
                  xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  171 vakpspegkvaaireLq..gkpeevamVGDgvnDaaalaaAg 210 
                  +  +sp++k   +  ++   k   ++++GDg+nD+a+++ A+
  CCD26492.1 1202 CCRASPSQKALMVSNIRntDKSLVTLAIGDGANDIAMIQSAD 1243
                  6677899999999999766777889**************997 PP

>> Hydrolase_3  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.4       1.2   3.7e+03      77     157 ..     845     948 ..     838     969 .. 0.40
   2 ?   -0.9   0.0      0.38   1.1e+03      14      48 ..    1092    1126 ..    1083    1160 .. 0.84
   3 !   16.3   0.2   2.1e-06    0.0063     206     228 ..    1226    1248 ..    1209    1253 .. 0.89
   4 ?   -2.8   1.3       1.4   4.1e+03     114     157 ..    1615    1658 ..    1571    1666 .. 0.44

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.2
                  --B-HHHHHHHHHHHHHTT...CEEEEEE...SSEEEESTT.................THHHHHHHHHCHCTCEEEESHHHHHCHCSESEEE..EES- CS
  Hydrolase_3  77 stiskedvkeiikllkenn...veillyt...edkvyvlnk................eksekkkkeeektkkkkeeidseeeledeeiakil..ilkd 150
                  ++i  +++++i +++ke++     +++ +    +++ ++ +                + + +  ++  ++ ++++ ++++ e + ++i ++l  +  +
   CCD26492.1 845 REIAFQKMEDINETAKERKeseAAVVIQQrksLERMAYN-DmprtslrgsisanaksSLTLQAMRNSISSLSNRNGNRKDPEMQIDSIDQFLdtMKRT 941
                  555556666666666666554322222221111122222.1345555555544443322222222222222333333333333333333333333333 PP

                  HHHHHHH CS
  Hydrolase_3 151 kekldel 157
                  ++++de+
   CCD26492.1 942 DNEIDEV 948
                  3333333 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.38
                   S---HHHHHHHHHHHHTTSEEEEE-SS-HHHHHHH CS
  Hydrolase_3   14 kkisektkeaikklkekgikvviATGRslravlpv 48  
                    k++e   eai+k++ +gik    TG + ++++++
   CCD26492.1 1092 DKLQEGVSEAIEKIRRAGIKMWMLTGDKRETAINI 1126
                   56788899*************99999888777766 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 2.1e-06
                   EEEEESSGGGHHHHHHSSEEEEE CS
  Hydrolase_3  206 viafGDgeNDieMLeaaglgvAm 228 
                   ++a+GDg NDi+M++ a++gv +
   CCD26492.1 1226 TLAIGDGANDIAMIQSADIGVGI 1248
                   79****************99965 PP

  == domain 4  score: -2.8 bits;  conditional E-value: 1.4
                   HHHHHHHHHCHCTCEEEESHHHHHCHCSESEEEEES-HHHHHHH CS
  Hydrolase_3  114 sekkkkeeektkkkkeeidseeeledeeiakililkdkekldel 157 
                     k++++ e++++++e+  + +++ ++++   l  +++e+++e+
   CCD26492.1 1615 LIKREEMLENKSSNNESTPNIATKITKKLKFNLNTETDEDVNEI 1658
                   22233333333333333333322222222222233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1262  (0.0703888); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.00u 0.27s 00:00:01.27 Elapsed: 00:00:00.44
# Mc/sec: 11289.32
//
Query:       CCD26493.1  [L=694]
Description: hypothetical protein NDAI_0H03200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-06   25.8  18.3      6e-06   25.8  18.3    2.2  2  Vezatin        Mysoin-binding motif of peroxisomes
     0.0015   18.2   0.7     0.0028   17.3   0.7    1.4  1  Alpha-amylase  Alpha amylase, catalytic domain


Domain annotation for each model (and alignments):
>> Vezatin  Mysoin-binding motif of peroxisomes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8  18.3   6.7e-10     6e-06       3     277 ..     186     431 ..     184     492 .. 0.64
   2 ?   -3.2   0.9      0.48   4.3e+03     231     265 ..     606     642 ..     603     647 .. 0.82

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 6.7e-10
     Vezatin   3 aliifLlkqqq.........lkksssslvkgfkllliisvklikvlvlwrrqrlqvirqkalnqleefvknsqaldklvrkaLiliqEvelisrgyrls 92 
                 + ++ Ll  ++         l ++++    ++++++i+   li + +  r   + ++  +++  l+ f+++ q +d+ ++k     +E++++  +  ++
  CCD26493.1 186 NYLSILLDCRFilrrlkrrkLRSRQEHIIMQRVVVMIL--MLIYLAIEQRYCHIEYLKYRNILSLKLFLNSLQYFDAMLNKFHLRFKELSIYKPLS-IV 281
                 56666666666666554443222222222223333333..2333333446667777778889999****************999999999995554.44 PP

     Vezatin  93 splpPisrledqsqsrrcagLrkalystlsalflnlrkailkLlplsegdnlekYcdiynikelglseeslsdeeaeeetdeesLdaLkflfqkfnqlr 191
                      ++++    +s++++   + l  ++ +l  +l+++i  Llp+s++ + +kYc++yni+ ++l  +            +  + ++  +  +   ++
  CCD26493.1 282 E-ELRYNKIT-DTSSSNLMTVEELLIASFDQLYYHLKHSIYELLPISNIHEITKYCELYNISLTDLFYSI-----------NRKVSTIEEKSFRVRHIK 367
                 4.34689999.788899***********************************************999994...........334555555566666667 PP

     Vezatin 192 keflcqLLaLlsdsske.nffrwkla........................heilsellqsLshvlaecleeLhrifeteeseltperreraraklrkLn 265
                 ++flc LL+++s+ ++  n++ ++ +                                                                        +
  CCD26493.1 368 RLFLCILLSIQSRFQAAkNISPLESPlspifaefsspidnhvacisnirrI-----------------------------------------------E 419
                 999999999999866530333333334444444444444433333333332...............................................3 PP

     Vezatin 266 sLstlirsLqlh 277
                 ++ +++r+L+ +
  CCD26493.1 420 TVTRALRKLNCT 431
                 333333333333 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.48
     Vezatin 231 laecleeL..hrifeteeseltperreraraklrkLn 265
                 ++e +ee+  +++f+t ++ ++ e r++ +ak++kL+
  CCD26493.1 606 HEETHEEMgqYTHFKTIKQLTDEELRNQLNAKIHKLS 642
                 6677788888889999999999999999999999986 PP

>> Alpha-amylase  Alpha amylase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.7   3.1e-07    0.0028     167     298 ..     548     675 ..     497     689 .. 0.84

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 3.1e-07
                    -SEEEETTCCCTTTCCCCHCCHCCHHHHHHHHHHHTCCGTT-EEEEE-TT-SCCCHCCCC-CGG-SICECCITTCGGGCC-CTSTTSB-SS-HHHH CS
  Alpha-amylase 167 idGfRlDvvkhvskvealesngeflheftqalnetvasrkevmtvgEvssdasedlrvyttearlelemvldfphldvaqkakikeqlksisakkl 262
                     +Gf lDv k  +k ++   n + + ef++ ++++v   ++    +E+  +   + +v+ ++++   e++ +++h+++ ++  ++e  ++ +ak  
     CCD26493.1 548 KNGFHLDVFKTTPKLPEPVVNINEVVEFKTVADQYVP-DDD---ADETELSYGFEDNVDEETHEETHEEMGQYTHFKTIKQLTDEELRNQLNAKIH 639
                    68********************************993.222...355555556666777777777777889***********99999999999999 PP

                    HHHHHHHHHHS-CCCTTCEEES--TTS--HHHHTTS CS
  Alpha-amylase 263 kellkkwlkaleeaaeeavtflgnHDqeRilsrlgd 298
                    k  l++ +++ +  +++++ +l  HD  R +  lg+
     CCD26493.1 640 KLSLENKKSRETLRTQKSFELLRHHDDDRKVHTLGR 675
                    999999998888899**************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      396  (0.0220871); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 5218.34
//
Query:       CCD26494.1  [L=813]
Description: hypothetical protein NDAI_0H03210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.7e-92  306.7   0.0    1.7e-91  305.7   0.0    1.5  1  LNS2      LNS2 (Lipin/Ned1/Smp2)
    3.6e-42  142.5   0.0    8.1e-42  141.3   0.0    1.6  1  Lipin_N   lipin, N-terminal conserved region


Domain annotation for each model (and alignments):
>> LNS2  LNS2 (Lipin/Ned1/Smp2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.7   0.0   1.9e-95   1.7e-91       2     226 .]     343     598 ..     342     598 .. 0.98

  Alignments for each domain:
  == domain 1  score: 305.7 bits;  conditional E-value: 1.9e-95
        LNS2   2 slrltseqlkslnLkeGkneieFsvttklqgtaeveakiylwksddkivisdidgtitksdvlGhilpllgkdwthkgvaklyskikengYkilylsar 100
                 ++rltseql+ l+Lk+G+n+++Fs+++   g+a v+ak+++w++d  ivisdidgtitksd+lGh+l ++gkdwth gvakl+s+i++ngY+ilyl+ar
  CCD26494.1 343 TIRLTSEQLRCLDLKYGENDLKFSIDH---GKAIVRAKLFVWRWDVPIVISDIDGTITKSDALGHVLAMIGKDWTHIGVAKLFSEIARNGYNILYLTAR 438
                 89************************7...********************************************************************* PP

        LNS2 101 aigqaeltreylksveqdgvkLPkgPvllspdrllsalkreviekkpeefkiacLkdikklfp................................eekn 167
                 + gqa++tr+yl+s+ q++ +LP gPv+lspdr+++al+revi kkpe+fkiacL+di++l+                                 e+ +
  CCD26494.1 439 GAGQADSTRSYLRSIYQNKNSLPVGPVILSPDRTMAALRREVILKKPEVFKIACLNDIRSLYFdgeleknkdhehtlseekneqqdpvlpnpqadEKPT 537
                 **************************************************************99****************************9877788 PP

        LNS2 168 pfyagfGnritdvisYkavgvpksriftinpkgelkee..llkklkssyeslselvdkiFP 226
                 pf+agfGnritd++sY++vg+p+sriftinp+g +++e  +l+ ++ssy +++elvd++FP
  CCD26494.1 538 PFFAGFGNRITDALSYRTVGIPSSRIFTINPEGDVHMEllELAGYRSSYIHINELVDHFFP 598
                 **************************************888899****************9 PP

>> Lipin_N  lipin, N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.3   0.0     9e-46   8.1e-42       1     102 []       1     103 [.       1     103 [. 0.98

  Alignments for each domain:
  == domain 1  score: 141.3 bits;  conditional E-value: 9e-46
     Lipin_N   1 mnyvgkvlssvkelykeinpatlsGaiDvivveqedgelkcspfhvrFgklkvlrskekvvdievNgeevdlkmklgeaGeafFveet.eeeeevpeel 98 
                 m+yvg++l sv++++++inp+tlsGaiDvivveq+dg+l+cspfhvrFgk+++l++++k+v+++vN++++++ mkl+e+Gea+Fv+et ++  ++p+el
  CCD26494.1   1 MQYVGRALGSVSKTWSSINPSTLSGAIDVIVVEQPDGTLACSPFHVRFGKFQILKPSQKKVEVIVNDKSTNIPMKLSESGEAYFVFETgSDLGNIPSEL 99 
                 9***************************************************************************************99999999999 PP

     Lipin_N  99 atsp 102
                   sp
  CCD26494.1 100 LASP 103
                 9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       936  (0.0522059); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.68u 0.26s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 5799.33
//
Query:       CCD26495.1  [L=296]
Description: hypothetical protein NDAI_0H03220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      9e-55  182.6   4.5    1.7e-25   88.8   0.0    3.1  3  Mito_carr        Mitochondrial carrier protein
    1.2e-07   31.1   0.1     0.0035   16.6   0.0    2.4  2  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> Mito_carr  Mitochondrial carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.2   1.5e-12   1.4e-08      44      94 ..       4      55 ..       2      58 .. 0.92
   2 !   60.0   0.1   1.8e-20   1.6e-16       5      90 ..      63     153 ..      60     158 .. 0.91
   3 !   88.8   0.0   1.9e-29   1.7e-25       3      96 ..     169     290 ..     167     291 .. 0.87

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 1.5e-12
                SCSSHHHHHHHHHHHHHH.HGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
   Mito_carr 44 ksaaildvlkkiykeeGl.rglyrGllpnllrvapasalkfvlyetlkrlll 94
                k+++++ ++k+++ eeG+ rgly+G+ +++l++ p++a+ f++ye++kr + 
  CCD26495.1  4 KYKNMITAYKTVFLEEGImRGLYSGYFAAMLGSLPSAAIFFGTYEFCKRKMI 55
                456699************99****************************9886 PP

  == domain 2  score: 60.0 bits;  conditional E-value: 1.8e-20
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTSCSS.....HHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHH CS
   Mito_carr   5 vlkellaGglagavatlvttPldvvKtrlqtqkksskksksaa.....ildvlkkiykeeGlrglyrGllpnllrvapasalkfvlyetlk 90 
                 ++++l +G ++  ++++v  P +v+Ktrlq+q++ ++   +++     + ++++ki+++eG+++l+ G+ ++l+r  p sal+f++ye+++
  CCD26495.1  63 TMSHLTSGFMGDFMSSFVYVPSEVLKTRLQLQGRFNNPYFQSGynyrnLKSAISKIIQTEGIHALFFGYKATLVRDLPFSALQFAFYEKFR 153
                 6789***************************99997766555578888****************************************997 PP

  == domain 3  score: 88.8 bits;  conditional E-value: 1.9e-29
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH......................CCCSSTTTSCSS..............HHHHHHHHHHHHHHHGGG CS
   Mito_carr   3 lsvlkellaGglagavatlvttPldvvKtrlqt......................qkksskksksaa..............ildvlkkiykeeGlrgly 65 
                 ls+ +el++G++ag +a+++ttP+dv+Ktrlqt                      +  ++      +              i++ l+++y++eG+ gl+
  CCD26495.1 169 LSLSNELITGACAGGLAGVITTPMDVLKTRLQTqlevpdtqvftpntakavnntnN--NN------NsngrkpkqvilsrsIFQGLRSVYQSEGVIGLF 259
                 67889****************************99999999999999877654321..22......12335568899********************** PP

                 TTHHHHHHHHHHHHHHHHHHHHHHHHHHCTT CS
   Mito_carr  66 rGllpnllrvapasalkfvlyetlkrlllkk 96 
                 +G++p++++++++s++++vly+++ r+l+++
  CCD26495.1 260 SGVGPRFVWTSIQSSIMLVLYQMTLRVLTNS 290
                 **************************99875 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   7.1e-06     0.063      42     116 ..      17      93 ..       5     135 .. 0.73
   2 !   16.6   0.0   3.9e-07    0.0035     173     239 ..     171     237 ..     163     264 .. 0.82

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 7.1e-06
  Serine_protease  42 ysgGlfralYrGflayalagskrravaVtakkt...nreteeeeieeelk.ikqrylgtvlfsaldllvsqileskskl 116
                      +++G++r+lY+G++a a+ gs   a+   ++ +    ++  e e++e+++ + + ++g +++s   ++ s++l+ + +l
       CCD26495.1  17 LEEGIMRGLYSGYFA-AMLGSLPSAAIFFGTYEfckRKMIDEYELNETMShLTSGFMGDFMSSF-VYVPSEVLKTRLQL 93 
                      589************.9***99999887766542114478888887766514558899998774.45566666555444 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 3.9e-07
  Serine_protease 173 lynkllaGalsGviAtvlttifnsykDkkllaskvengrlltaspftllkqlkshvkeglkealktf 239
                      l n+l++Ga +G +A+v+tt++  +k +  ++ +v + ++ t ++++ +++++++ +++ ++  + +
       CCD26495.1 171 LSNELITGACAGGLAGVITTPMDVLKTRLQTQLEVPDTQVFTPNTAKAVNNTNNNNNSNGRKPKQVI 237
                      67999**********************************************9999888655544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       504  (0.0281109); expected 358.6 (0.02)
Passed bias filter:                      402  (0.0224218); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.36
# Mc/sec: 2471.50
//
Query:       CCD26496.1  [L=911]
Description: hypothetical protein NDAI_0H03230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    7.1e-84  281.4   0.1    2.3e-83  279.7   0.1    1.9  1  Mlh1_C          DNA mismatch repair protein Mlh1 C-terminus
    9.3e-30  102.8   0.3      2e-29  101.7   0.3    1.6  1  DNA_mis_repair  DNA mismatch repair protein, C-terminal domai
    2.9e-13   49.8   0.1    7.5e-13   48.5   0.1    1.7  1  HATPase_c_3     Histidine kinase-, DNA gyrase B-, and HSP90-l
    6.8e-07   29.8   0.0    2.1e-06   28.2   0.0    1.8  1  HATPase_c       Histidine kinase-, DNA gyrase B-, and HSP90-l


Domain annotation for each model (and alignments):
>> Mlh1_C  DNA mismatch repair protein Mlh1 C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.7   0.1   5.2e-87   2.3e-83       2     270 .]     646     911 .]     645     911 .] 0.87

  Alignments for each domain:
  == domain 1  score: 279.7 bits;  conditional E-value: 5.2e-87
                 -HHHHHHHHHHHHHB-HHHHHHHHT-EEEEEEET..TEEEEEETTEEEEEEHHHHHHHHHHHHHHHHTT--EEEE-.............G-.-BHHHHH CS
      Mlh1_C   2 ltsvkelraeveesahkeLteilanltfVGlvde..rlaliQhgtkLylvdygalskelfyqllLtdFgnfgeikL.............eeplslkeLl 85 
                 lts+kel+a+v++s+++eLt i+a+l++VG++d+  r+a+iQh++kL+lvdyg+++ elfyq++LtdF+nfg+ikL             e++l+lk+Ll
  CCD26496.1 646 LTSIKELKAAVDNSVNDELTTIFADLIYVGIIDPnrRVAVIQHDVKLFLVDYGSVCFELFYQIALTDFANFGSIKLddndndnndsvknEDSLQLKRLL 744
                 9**********************************9****************************************54444443333333333333333 PP

                 TTS-SHH.................HHHHHHHHHHHTHHHHHHHH--EETT-........EEEEEEEE-STT----STTHHHHHHHHHHTS-TTSHHHHH CS
      Mlh1_C  86 elaleeeeeeeeeeseeedkskeelaekivelLiekaemLeeyFsieided........gellslPlllkgytpslekLPlfllrLateVdWeeekeCf 176
                                ++  + +ee +++ive L+e++emL+eyFsi++++d         +l+s+P+llk+y+p++ kLPlf++rL+t+VdW+ee++C+
  CCD26496.1 745 ---------------STIGSINEESINAIVEKLWEMREMLDEYFSIKLESDagkenlesIRLVSIPMLLKEYIPPIIKLPLFIYRLGTKVDWSEEQTCL 828
                 ...............33334467899**********************7555544454466************************************** PP

                 HHHHHHHHHHHS----.---....-T.T-...TTS-HHHHHHHHHHHHHHHHHHHHTHHHHHHHH---BGGGGG..GEEEEEEHHHHHHHS--- CS
      Mlh1_C 177 etilrelAlfyapeqlpekeeseekaseeekeeeeeeeeeeeaeerreelkwvlehvlfpaikarllppksllkdgtvvevasledLYkVFERC 270
                 ++i+++lAl+y+pe++ ++         +e+ + + ee++ ++ ++ + ++++le v+fp+ik+rll+pk+llk  +++e+a+l++LYkVFERC
  CCD26496.1 829 QGIMQQLALLYIPEMIDPS---------HESGAIDCEENDIDRVTSLDLMSKLLETVIFPCIKRRLLAPKNLLK--DIIEIADLPGLYKVFERC 911
                 ************9999663.........456677889999999*******************************..7***************** PP

>> DNA_mis_repair  DNA mismatch repair protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.3   4.4e-33     2e-29       1     116 [.     213     332 ..     213     335 .. 0.95

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 4.4e-33
                     HHHHHHHHHHCCEEEEEEEETT....EEEEEEEE-CCG-BTTGGEEEEEETTEEE--HHHHHHHHHHHHCCSSSSSB-EEEEEEEESSGGEE-TS CS
  DNA_mis_repair   1 iaavlgkevaenlleiekeeeq....lkieGfiskpelsrskrdkqflfvNgRlvkskelkkaireaYkellpkgrypvvvLnleidpeevDvNv 91 
                     i++++g++v++++++++++  +    +++eG++s+ +++ +k+ + ++f+N+Rl++++ l++ ++++Y+++lpkg  p+++L++ i+p++vDvNv
      CCD26496.1 213 IRQIYGAQVSSHIIPFTSDPMNdlnvISVEGLLSSITFNFKKPIRPIFFINNRLITCEPLRRSLNAIYNNFLPKGIRPFIYLSILINPTSVDVNV 307
                     689**************666556899********************************************************************* PP

                     STT----EETTHHCHHHHHHHHHHH CS
  DNA_mis_repair  92 hPtKreVrfqdeeevieaieealke 116
                     hPtKreVrf +++e++e i  ++++
      CCD26496.1 308 HPTKREVRFLNQDEILEEIALNVQS 332
                     ******************9988876 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.1   1.7e-16   7.5e-13       2     106 ..      24     128 ..      23     140 .. 0.84

  Alignments for each domain:
  == domain 1  score: 48.5 bits;  conditional E-value: 1.7e-16
  HATPase_c_3   2 slekAlaelvdNsldAdaenvkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakrkstslGkkGi.GlklAslslgkkltvitkkege 97 
                  s+  Al e+++Ns+dA+a+++++ v++     + ++i+D+G+G+++++l     r+ ts+ e+  + + +  +G+ G  lAs+s  +++tv+tk++++
   CCD26496.1  24 SPMNALKEMIENSIDAKATSIDVLVKEG--GIKLLQITDNGSGIEKDDLPILCeRFTTSKLEKFDDLQNIQTYGFrGEALASISHIARVTVTTKTKND 119
                  6678**********************95..6899***************986525666666655666667777777788******************* PP

  HATPase_c_3  98 sstltldvd 106
                  +++ +++++
   CCD26496.1 120 KCAWKVSYS 128
                  998888775 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   4.7e-10   2.1e-06       8      71 ..      27      93 ..      22     150 .. 0.75

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 4.7e-10
                HHHHHHHHHHHHHHSTTTEEEEEEEEEE.TEEEEEEEESSSSSTTHHHTGTCSTTCH......HCSTCHTS CS
   HATPase_c  8 qiisnlvdNavkfatkageieveikase.ddlvisveDnGiGipkedlkklfekfsq......ddstkrgg 71
                 +++++++N++++  ka++i+v +k  e + + ++++DnG Gi k+dl+ l e+f++      dd +++++
  CCD26496.1 27 NALKEMIENSIDA--KATSIDVLVK--EgGIKLLQITDNGSGIEKDDLPILCERFTTsklekfDDLQNIQT 93
                6799********6..99********..5468888***************8888999987776644444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1139  (0.0635284); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                        16  (0.000892409); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.49
# Mc/sec: 5548.00
//
Query:       CCD26497.1  [L=630]
Description: hypothetical protein NDAI_0H03240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   3.5e-219  728.5  24.7   4.1e-219  728.3  24.7    1.0  1  Cep3      Centromere DNA-binding protein complex CBF3 subunit
    8.6e-07   29.0   7.7    1.5e-06   28.2   7.7    1.3  1  Zn_clus   Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Cep3  Centromere DNA-binding protein complex CBF3 subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  728.3  24.7  4.6e-223  4.1e-219       1     511 []     107     629 ..     107     629 .. 0.99

  Alignments for each domain:
  == domain 1  score: 728.3 bits;  conditional E-value: 4.6e-223
                 HHHHCS-HHHHHHHHHHHHHH-HHHHCCCC--THHHHHHHHHHHHCSS-S--B.......HHHHHHHHHHHHHHHHHHHCS-HHHHHHH--SHHHHHHC CS
        Cep3   1 fwekllneeqsfklLdysvenLGaLyFGclsdiseLylkleeywrrreekeekettvt..sdeyysdallwsvftlavYYmpleelselldsekveeyl 97 
                 fw+klln+e+sfklL++++e+LGaL+FGcl+++++Ly +le+ywrrree+ee+et++   sd+yys+allw++ft++vYYmpl++l++l+ds++v+++l
  CCD26497.1 107 FWMKLLNMEASFKLLNFAMEQLGALHFGCLGELADLYPQLEHYWRRREEAEESETHIFltSDNYYSNALLWAFFTISVYYMPLDQLAKLFDSKSVCKWL 205
                 9***************************************************99998888*************************************** PP

                 TS-TT--GGGTHHHHHHHHHHHHHHHHHHHTTTTTS--HHHHHHHHHHTTTTHHHHSHHHHHHHHHHHHHHHHTT-----S--TTS-HHHHHHHHHHHH CS
        Cep3  98 ekdekeelteelqlelyegflkttitqlkkanfmanpdirliQiyliLsnTsflfeensladslllqclhvaKlfkiddfkplvedsaalrlskltlek 196
                 e++  +e+te+l++el++gf++tti+ql+ka+fm++pdirl+Q+y+iL++Tsf+f++++l+dsl++qc++vaKlf+id++kp+++d++a+++sk++++k
  CCD26497.1 206 EVNPLDEWTEQLSYELFRGFTNTTIMQLNKAKFMMYPDIRLLQTYIILNSTSFTFSDHILVDSLIIQCMNVAKLFSIDFYKPFNDDDEATEISKNRFAK 304
                 *************************************************************************************************** PP

                 HHHHHHHHHHCT-STTB---SGGCS--S---------------TTSCHHHHHHHHHHHHHHHHHHTTSSSSS---HHHHHHHHHHHHHHHHHHT.S--- CS
        Cep3 197 lwyrlcilDYlqsgpnkkisihteisSllqhaayledlpnvdvyqeednfevllWKivSLdrdldqylakeskPslktLdaikreleilekkvs.seee 294
                 +wy lci+DYlqsgp+k is+h+ei+Sl+ +++++e ++++d+++e++nfe+++WKi+SLdrd+d+yl++++kP++ tLd+i++el ++ek++s ++++
  CCD26497.1 305 IWYLLCIADYLQSGPSKLISFHSEIPSLFLQPSFFEFNSSTDIFHEDSNFELMCWKIISLDRDIDKYLNQVAKPRMGTLDNIRKELAKVEKQISlKQKK 403
                 *********************************************************************************************879999 PP

                 TT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTHHHHHHHHHHHHHHHHHGGGSTTSGGGGGSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHH CS
        Cep3 295 eesinskfekFllkfllnlvsWKlsklyliyYdtensleklihytkvlIallvknvkekkelfnkhPivlkilsriatFysfykifeeseeveqlvldl 393
                 e++ +s++ekF+++fl+n+v WK++k+yl+yY++e+sl+ +ihytk+lIallvknv+e++++fnkhP+v++i+sria+Fy+fy+if++++++ q+++dl
  CCD26497.1 404 EKTSRSTLEKFITTFLINSVFWKIHKAYLVYYQVEQSLSVSIHYTKTLIALLVKNVTEGNSIFNKHPYVFRIISRIAPFYEFYSIFQQTDQILQIKADL 502
                 9************************************************************************************************** PP

                 HHHHTTS-GGGHHHHHHHHHHHHHHHHHHHHHHSS--EE-SSSEE-HHHHHHHHHHHHHHHCT-THHHHHHHHSS-----..........--------- CS
        Cep3 394 kellkslplllgeklekllfllerlekLkklwekvkvvdseselkHPvfkiLqnDiktikksnnklpklikgtkseaenk..........klfddklee 482
                 +el+++++l++gek+++llf+l+rl+ L++lw++v+v++s+ +++HPvfkiLqnD+k+i+++n+++p++ikgt+++a+++          k+fd+ +e+
  CCD26497.1 503 NELISTFSLMFGEKINNLLFILDRLHGLEILWTRVQVIGSGLTAIHPVFKILQNDMKFINRYNRRVPMVIKGTGNIAPRNryntgedesiKNFDE-DEA 600
                 ******************************************************************************99999999988766666.889 PP

                 ----------HHHHHHHHHHHHS-GGGC- CS
        Cep3 483 eleeeakeseefklivseFekeynideii 511
                 +++ +a e+eefk+ivs+Fe+eynid++i
  CCD26497.1 601 NFKVAALETEEFKMIVSTFENEYNIDNLI 629
                 9999999*******************987 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   7.7   1.7e-10   1.5e-06       2      30 ..      15      44 ..      14      50 .. 0.91

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 1.7e-10
                S-HHHHHCT---STSSSS-HHHHHCT..HHH CS
     Zn_clus  2 aCdnCrkkKvKCdakkPaCsnCkkln..leC 30
                aC  C++kK+KCd+ +P C++C++++  +eC
  CCD26497.1 15 ACSVCKRKKTKCDKLIP-CTSCVQKGleAEC 44
                9****************.********77788 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1218  (0.0679346); expected 358.6 (0.02)
Passed bias filter:                      567  (0.0316247); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.44
# Mc/sec: 4326.99
//
Query:       CCD26498.1  [L=512]
Description: hypothetical protein NDAI_0H03250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   2.8e-159  530.6   0.0   3.2e-159  530.3   0.0    1.0  1  Aldedh    Aldehyde dehydrogenase family


Domain annotation for each model (and alignments):
>> Aldedh  Aldehyde dehydrogenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  530.3   0.0  1.8e-163  3.2e-159       1     462 []      26     503 ..      26     503 .. 0.95

  Alignments for each domain:
  == domain 1  score: 530.3 bits;  conditional E-value: 1.8e-163
                 EET-SS.SEEEEEETTTCEEEEEEE-B-HHHHHHHHHHHHHHHH.HHTTS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHH---HHHHHH.HHHHHHHH CS
      Aldedh   1 wveses.etievinPatgeviakvpaataedvdaavaaAkeafk.awaklpaeeRaeiLrkaadlleerkeelaeletletGkplaeara.eveeaidv 96 
                 +v+se+ e+ie+inP+tgevi+++ +++ +dvd+av+aA +a++  w++++++eR+ +L+k+adl+e++k  la+letl+ Gkp+++ +  ++e++i  
  CCD26498.1  26 FVKSENeEKIETINPSTGEVITSFYSGSFADVDRAVKAASDAYEnVWKHTSPAERSLLLMKLADLIERDKCTLAALETLDSGKPYHSNAMlDLEQIIYL 124
                 577788566**********************************988****************************************99999******** PP

                 HHHHHHHHHH.HSEEEEEECTTEEEEEEEEE-SEEEEEE-SSSCCHHHHHHHHHHHHTT-EEEEEE-TTSHHHHHHHHHHHHHTTS-TTSEEE--SSTC CS
      Aldedh  97 lryyaelaek.legevlpssegklalvrrePlGvvgaItPWNfPlllaawklapalaaGNtvvlKPaeetplsalllaelfeeaglPkgvlnvvtgsgs 194
                  ry+a++ +k  +ge++p+se+k++++   P+Gvvg+I+PWN+Pl++a+wk+  +la+GNt+vlKPae+t+ls+l+la+lf eag+P+gvln+++g+g+
  CCD26498.1 125 TRYFAGATDKfTTGETIPISEEKFCYTLMAPYGVVGQIVPWNYPLAMASWKIQGCLATGNTIVLKPAENTSLSVLYLAQLFVEAGFPPGVLNIIPGNGA 223
                 **********8888*****99****************************************************************************** PP

                 CHHHHHHH-TTESEEEEES-HHHHHHHHHH.HHCTTSEEEEEE---EEEEE-TTSHHHHHHHHHHHHHHGGGGTSTTSEEEEEEEHHHHHHHHHHHHHH CS
      Aldedh 195 evgealvehpevdkvsftGstevgrkiaka.aaknlkrvtlElGGknplivledaDldkaveaivkgafgnaGQvCiaasrllvqesiydefveklvea 292
                  vg+al +hp+++k+sftGst+vg  i+ka a++n+k vtlE+GGk+p++++eda+l++a+e+++kg+f+n+GQ+C+a sr++v+ s yd+f+e ++++
  CCD26498.1 224 VVGNALGKHPGIEKISFTGSTSVGLGILKAsAESNMKDVTLECGGKSPAVIFEDANLEQAIEWTAKGIFFNSGQNCTANSRIYVHYSNYDKFLELFTKH 322
                 ******************************777****************************************************************** PP

                 H.HT--BS-...TTSTT-SB---SSHHHHHHHHHHHHHHH...HTTSEEEE-TT.....E.SB-SSSTTEE--EEEES-TTTSHHHHS---SSEEEEEE CS
      Aldedh 293 a.kklkvgd...pldedtdvGPliseaqlekvekyveeak...eegaklllGge.....reeaglekgyfvePtvlanvtpdmriaqeEiFGPVlsvik 379
                 + +k+ +g+   p+ded+++GP+is++q++k+ ++++ +    e  +kl +  +      + ++ +kg+f+ Pt+++ v+ d++  +eEiFGP ++v++
  CCD26498.1 323 IkEKWGFGKnfdPFDEDCTIGPVISKKQFDKISEFLKGEMphpETPYKLSYTCKvhkvlDDPPESNKGFFIPPTIFTSVPYDSPWNTEEIFGPAVTVTP 421
                 *667788875558999********************97642225667777766666888789999********************************** PP

                 ESSHHHHHHHHHSSSEESEEEEE-SBHHHHHHHHHHS-SSEEEESSSST--TTTSEB--CGGGEES-BSHHHHHHHTEEEEEE CS
      Aldedh 380 fkdeeeaieiaNdteyGLaagvftkdleraervaerleaGnvyiNdsttgaaealpfgGvkqSglGreggkegleeytevktv 462
                 f++ +e+i++aN+t yGLa+++ft+++++a++++++++aG+v++N+s++ +++  pfgG+k+Sg+Gre gk g+e y+++k+v
  CCD26498.1 422 FETYDEVIKLANNTSYGLASAIFTENIRTANKFINDIQAGTVWVNSSNDPEMSV-PFGGYKMSGIGRELGKSGVETYCQTKAV 503
                 ***********************************************9999998.**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      481  (0.026828); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.24s 00:00:00.79 Elapsed: 00:00:00.41
# Mc/sec: 3787.83
//
Query:       CCD26499.1  [L=286]
Description: hypothetical protein NDAI_0H03260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       523  (0.0291706); expected 358.6 (0.02)
Passed bias filter:                      329  (0.0183502); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2126.43
//
Query:       CCD26500.1  [L=687]
Description: hypothetical protein NDAI_0H03270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      6e-10   39.3   0.0    1.4e-09   38.1   0.0    1.7  1  SPRY             SPRY domain
  ------ inclusion threshold ------
      0.042   14.4   0.1        0.2   12.2   0.1    2.2  1  Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
        1.9    9.2   6.6          1   10.0   3.3    2.3  2  DUF3824          Domain of unknwon function (DUF3824)


Domain annotation for each model (and alignments):
>> SPRY  SPRY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   2.3e-13   1.4e-09       3     118 ..     308     442 ..     306     444 .. 0.85

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 2.3e-13
                 EEEEEET............CCTSSEEEEEEEETTSSSSSTSSSTSSTTEEEEETETTEEE.....EETESCEEEESSSSTTSEEEEEEETTTTEEEEEE CS
        SPRY   3 yfevkiq............saeggsisvGlateqtdlsdksgegddrgswglcgdngtrt.....saeqskaygkqparegdviGvalDleegelsFtk 84 
                 y e+ki+              +++ +s+Glat++++    +  g   +s+ ++++ ++r+      +++ ++  +  +++gdviG+++ + +g+++Ft 
  CCD26500.1 308 YLEFKIFelensnstttldYSNNEILSFGLATNPYP--YFRLPGRHHHSISYDSNGARRFndsfkLPSELSNIFP-QMERGDVIGIGYRVRSGTVFFTR 403
                 55666665656566666666788999**********..77778***********888888887777778888888.899******************** PP

                 TTEEE.....EEEEESTTTSSEEEEEEE.STCEEEEESS CS
        SPRY  85 ngknl.....gvaFrnvrgaelfPvvslgngaslkinlg 118
                 ngk+l     g   +n + +  +P+v  +  +++++nlg
  CCD26500.1 404 NGKKLnekpiGGHIKNWKLKYIYPIVGTNVPCKIHVNLG 442
                 **999999999999999999********99999999998 PP

>> Pur_ac_phosph_N  Purple acid Phosphatase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   3.4e-05       0.2      20      88 ..     150     216 ..     141     220 .. 0.83

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 3.4e-05
  Pur_ac_phosph_N  20 WitpektkksvvrygtssdalestaeatsstyettnyksgyshkatltgLepgttYyYrvgddeggwSe 88 
                      ++t+  t++s    +t++++++ ta  ++s++++   ++    +++l++L p  ++yY+ g d  ++S+
       CCD26500.1 150 FYTTRGTNDSATTTATTNNNNDITASLDTSAMNY--LDDSLKIQYKLSDLSPEEQFYYKQGEDFLKQSP 216
                      6788888899999999999999999999999865..677888899**************9988444665 PP

>> DUF3824  Domain of unknwon function (DUF3824)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       1.3   7.9e+03      78     124 ..     307     353 ..     280     368 .. 0.53
   2 ?   10.0   3.3   0.00017         1      26     114 ..     483     582 ..     475     604 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.3
     DUF3824  78 yyPetnyFPPPPgstpk..psveeepeaaiapynPadYpppPgaappeq 124
                 yy e + F    +++++   + ++e  +     nP +Y+  Pg    ++
  CCD26500.1 307 YYLEFKIFELENSNSTTtlDYSNNEILSFGLATNPYPYFRLPGRH--HH 353
                 665555555443332221322233333333336888888888873..33 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00017
     DUF3824  26 yakrrerkkaerererrreedeardsyeeeyepepyspsPeassqPsasqes.yy.....PetnyFPPPPgs....tpk.psveeepeaaiapynPadY 113
                 y+++ ++   + e+e++ +++e +d+  ++ ++++ + s e+ ++P+++ +s  y      e++  PPPPg     tp+   ++ee + +  p +P  Y
  CCD26500.1 483 YQNQDDEDDDDDEEEEEDSDEEVNDYELHTEDDDNSDDSGEEGEDPTDDANSsIYnglrnDEGELLPPPPGFefstTPEsRIISEEINLNSLPAEPPRY 581
                 55555555555555555556654454444446777777777******988877555777789999*****98554433344455555555555566556 PP

     DUF3824 114 p 114
                  
  CCD26500.1 582 S 582
                 5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       999  (0.0557198); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        29  (0.00161749); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.45
# Mc/sec: 4585.69
//
Query:       CCD26501.1  [L=998]
Description: hypothetical protein NDAI_0H03280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.5e-87  291.3   0.3    1.6e-86  290.6   0.3    1.3  1  HECT      HECT-domain (ubiquitin-transferase)


Domain annotation for each model (and alignments):
>> HECT  HECT-domain (ubiquitin-transferase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.6   0.3   8.8e-91   1.6e-86       4     307 .]     695     998 .]     692     998 .] 0.92

  Alignments for each domain:
  == domain 1  score: 290.6 bits;  conditional E-value: 8.8e-91
                 HHHHT.-GGGSSEEESSTTSSSEEE-TTHHHHS........HHHHHHHHHHHHHTT--BSS-B-HHHHHHHTT...-.---TCHHHHH-HHHHHHHHHH CS
                 xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxx RF
        HECT   4 skell.dpklglfeeesedsgtlypkpssseee....llklfeflGkvlGkaiyeeilldlpfsraflkfllg...eekitledleeidpelakslkel 94 
                 ++e + dp+ +lf+  ++ +++lyp   ++       + k+fef+G++lGk++y+++l+d++f+++fl++ll+   +  + ++dl ++dp l+++l +l
  CCD26501.1 695 TDEGFkDPEKELFQ--TTGTYKLYPMIAKN--GitreKGKYFEFMGAILGKCLYDHVLIDVQFANFFLQKLLNcsnNFLVGFDDLVDLDPVLYRNLLKL 789
                 566666999****7..45555555554432..234667889********************************876445788***************** PP

                 H..HS-GGG...GT-BSEEEEETTEEEEEESSTTGGGSB--TTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHTTS-HHHHTTS-HHHHHHHHBCSSS. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT  95 lslesnteevedlaLtFtipenagasatieLipnGanipVtnenkkeYiklyvnyllkksvekqleaflkGfsevipskalklfdaeelellisGedel 193
                  s+++ +  +++l+L+F i++  g+  t+eLipnGan++V +en+ +Y+ ++ +y+l+ s++ q++ f++G++++i+  +++lf+a+el++lisG  ++
  CCD26501.1 790 VSMSATE--LKELDLNFEITSATGDG-TVELIPNGANVKVSKENVLLYLTKVSDYKLNISIAIQTQRFHDGLMSIIKPLWMELFNARELQMLISGAGKD 885
                 9885555..***********778888.9*********************************************************************** PP

                 --HHHHHHTEEEETT--TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSS--TTCGGG-B--EEEEE-S..-TTS--EEEGGGTEEEE---SSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        HECT 194 idvedlrrnteykggynaesetiewlweilkefspeekrlfLqFvTgssrlPlgGfaelhpkftierkskedetrLPtahTCfnlLklpdYsskeilke 292
                 id+++l++nt+y+ gy +++ ti+++weil+ef+ e++ +f +FvT+ +++Pl Gf+ l+p f i+  ++ d  rLPta+TC+nlLklpdY++k ilke
  CCD26501.1 886 IDLKNLKENTVYG-GYVETDLTIRYFWEILEEFTTEQRFEFVKFVTSVPQAPLRGFQTLEPLFGIRNAGSGDLGRLPTASTCVNLLKLPDYQNKTILKE 983
                 ************5.6************************************************************************************ PP

                 HHHHHHHHHH--XXX CS
                 xxxxxxxxxxxxxxx RF
        HECT 293 kLltAieetegFels 307
                 kLl+Aie ++gF+ls
  CCD26501.1 984 KLLYAIEAGAGFDLS 998
                 *************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (998 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       713  (0.039768); expected 358.6 (0.02)
Passed bias filter:                      462  (0.0257683); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.74u 0.24s 00:00:00.98 Elapsed: 00:00:00.42
# Mc/sec: 7158.99
//
Query:       CCD26502.1  [L=608]
Description: hypothetical protein NDAI_0H03290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.7e-99  332.8  42.3    4.4e-99  332.5  42.3    1.0  1  Glyco_transf_22  Alg9-like mannosyltransferase family
      0.007   16.3   0.8      0.012   15.5   0.8    1.4  1  AbiH             Bacteriophage abortive infection AbiH


Domain annotation for each model (and alignments):
>> Glyco_transf_22  Alg9-like mannosyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.5  42.3  4.9e-103   4.4e-99       2     417 .]       7     480 ..       6     480 .. 0.94

  Alignments for each domain:
  == domain 1  score: 332.5 bits;  conditional E-value: 4.9e-103
  Glyco_transf_22   2 ifllllalrlllalltqtsfdpDEffqslEvahklvfgkgtltWEyspkygiRSylfllllalpyrllaelvadskiav............... 80 
                      +f+ l+ +r++++llt+t+f++DE++q+lE+ah l++g+g+ltW++  k+ iRSy+f+++++++yr++++l+    ++v               
       CCD26502.1   7 LFKKLILIRVVNSLLTRTFFQADEYWQALEPAHLLAYGYGELTWDW--KFEIRSYAFPFVFEITYRIIHLLTVLIGYLVekltfcivelllmln 98 
                      6788999***************************************..********************************************** PP

  Glyco_transf_22  81 .............................lyapRlllallsalidyylfravcrky..................gseiakialllslsswglfv 127
                                                   +y p+l++a+++a+++yy++++v+++y                   + i++++++l +++ ++++
       CCD26502.1  99 pndefvwrithelrirsvdmiplleyfgvIYGPKLVMAIIAAIGEYYTIKLVQKLYlctldkdafnkrdekgsdYNLITQLVFVLTITNLFNAY 192
                      *************************************************************************98999**************** PP

  Glyco_transf_22 128 fstrtfsnslemlltsialyllsellsrenksssnekylvavlliavlavliRptsallwlplvlflllrlvkkrsktf.lfliialvllvlll 220
                      ++tr f+ns+em+lt i ly++++    + +++    + +++l++a++++l+Rpt+  +w++l +fll+++ k++++ f + ++++ +++++l 
       CCD26502.1 193 IITRSFINSFEMVLTAISLYYWDWSA--TCSHVD-SFQFFKSLTVAMFTCLQRPTNSFIWIILGVFLLINMAKQEKHIFeFIRLFISIISAFLT 283
                      ***********************933..433333.23689*********************************999999977777777788888 PP

  Glyco_transf_22 221 vlvlviliDslfYgkfvftplnflkyNvlsnlsslyGvhPwyfYllqnlpnilgvlllavllgllvllsr.........kvsr.lllllltill 304
                      +++l+ +iD +fY+k+ f+++nf+k+N++s+lss+yG++Pw+f+++q+lp +lg ++++++ +l+   s+         ++++ +++++  i+l
       CCD26502.1 284 AFFLNSTIDFYFYKKLSFPIINFIKFNFTSSLSSFYGTAPWHFHITQSLPFVLGYSIIFFVPTLFIRSSFpsaikkypsQLNNpFFQIKTVIVL 377
                      899****************************************************999999888888555677888999999************ PP

  Glyco_transf_22 305 tLlvysllpHKElRFllpvlPlillsaavlltrlsresakvskklsllvllllfnvvlalllglvhqagvillvevmseleetkrknrkekket 398
                      +++ ys ++HKE+RF++ ++Pl+l++ +++l rl r+++  +  + +l++  + ++++ +ll++++++g+i   evm++l++++        ++
       CCD26502.1 378 NIIAYSCIGHKEFRFVYSLQPLFLIMTTFFLLRLYRNEEFNQLVKLILFIGSILSLIFMTLLNFINESGSI---EVMKFLHNEP-------YPI 461
                      **********************************8666666666999************************...**********.......689 PP

  Glyco_transf_22 399 ssvyvlkecyrtPsssylh 417
                      +sv ++++c++tP++sylh
       CCD26502.1 462 ESVGFIMPCHSTPWQSYLH 480
                      ******************9 PP

>> AbiH  Bacteriophage abortive infection AbiH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.8   1.4e-06     0.012     107     192 ..     262     349 ..     255     430 .. 0.77

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 1.4e-06
        AbiH 107 eieeelfneldklisalkqyleewvnkielkssleksklklnlkeasflsFNYTntleklygissdnilhIHGklennlilGiek........l 192
                 + e+++f++++ +is ++ +l+ ++ + +++       +kl ++  +f++FN+T+ l + yg ++    h H  ++ + +lG++         +
  CCD26502.1 262 KQEKHIFEFIRLFISIISAFLTAFFLNSTIDFYF---YKKLSFPIINFIKFNFTSSLSSFYGTAPW---HFHITQSLPFVLGYSIiffvptlfI 349
                 4567889999999999999999999998775543...3456666689****************887...7777777799**9955665444441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       802  (0.044732); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 4217.38
//
Query:       CCD26503.1  [L=410]
Description: hypothetical protein NDAI_0H03300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-55  186.8   1.0    1.1e-54  185.2   0.0    2.0  2  PCRF      PCRF domain
      2e-37  127.6   3.5      2e-37  127.6   3.5    1.7  2  RF-1      RF-1 domain
     0.0037   17.1   1.6       0.23   11.3   0.2    2.4  2  MIR       MIR domain
  ------ inclusion threshold ------
       0.13   12.2   0.2       0.75    9.8   0.1    2.4  2  Turandot  Stress-inducible humoral factor Turandot
       0.71    9.3   3.6       0.26   10.7   0.2    1.8  2  PEX11     Peroxisomal biogenesis factor 11 (PEX11)


Domain annotation for each model (and alignments):
>> PCRF  PCRF domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.2   0.0   3.1e-58   1.1e-54       4     193 .]      59     244 ..      49     244 .. 0.92
   2 ?   -0.4   0.2      0.25     9e+02       5      46 ..     317     358 ..     299     407 .. 0.61

  Alignments for each domain:
  == domain 1  score: 185.2 bits;  conditional E-value: 3.1e-58
                 HHTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHH...HT....-S-..-GGGTHHHHHHHHHH..HHHHHT-..SSSTTSEEE CS
        PCRF   4 eleelekklsdpevwedqekakklskelaeleeivealeeleealedleeakelleedeelaelaeeeleelekeleeleeelkklLlpkdendeknai 102
                 e+++l+++ls+  v  d +     +k++a+l++i++ +e++ +  +d++e+k+++e+d+ l+e+ae el+e +k+l++++++l k Llp+++  ++++i
  CCD26503.1  59 EFKKLTDDLSKG-VSFDVD----NQKKYAKLSSICNIYENYMTSFNDCNELKQMIESDPTLREEAELELKESTKQLSHASSQLMKALLPSHPFASEPCI 152
                 555666666554.333433....3789************************************************************************ PP

                 EEEEE-SSTHHHHHHHHHHHHHHHHHHHTTT-EEEEEEEEESSS..SEEEEEEEEESTTHHHHHGGG-EEEEEEEE-TTSSS--EEEEEEEE CS
        PCRF 103 leiraGaGGdeaalfaedLlrmYtryaerkgwkvevldaseeeag.GikevtleiegegaYgkLkfEsGvHRvqRvpetesqgrihTStatV 193
                 +e+r+GaGG ea++f++dLl+mY +y+++k+wk+++++++e+e g Gi ++t++i+++g Y++L+fE+GvHRvqR+p+te++gr hTSta+V
  CCD26503.1 153 IELRPGAGGIEAMIFTQDLLNMYINYCHNKKWKYTIMEKNENESGdGIIDATITIDQPGSYDRLRFEAGVHRVQRIPATETKGRTHTSTAAV 244
                 *****************************************66655********************************************98 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.25
                 HTTTTTST.-GGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHH CS
        PCRF   5 leelekklsdpevwedqekakklskelaeleeivealeelee 46 
                 ++ l+++l d+e  e+ ek ++l k++   ++  +++++++ 
  CCD26503.1 317 YAILRARLLDKEQREKDEKERSLRKDQVTTTDRSDKIRTYNY 358
                 444444444444444444445555555555555555554444 PP

>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.3       3.3   1.2e+04      65      88 ..     104     124 ..     102     136 .. 0.35
   2 !  127.6   3.5   5.7e-41     2e-37       6     116 .]     262     367 ..     258     367 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 3.3
                 HHHHHHH..HHHHHCCCCCHTTTTT- CS
        RF-1  65 Lkaklke..keleeekeeekkrrvkk 88 
                 Lk+++++  + l+ee+e e     k+
  CCD26503.1 104 LKQMIESdpT-LREEAELEL----KE 124
                 5555544321.112111111....11 PP

  == domain 2  score: 127.6 bits;  conditional E-value: 5.7e-41
                 E--GGGEEEEEE---SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S---S.--ECEE CS
        RF-1   6 eidekdleidtfrssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkigtgs.sekiRt 103
                 e ++++++id++r++G+GGQ+VN+t+saVrlthlptg ivv++q+eRsq+kN++kA  +L+a+l +ke++e++e+e++ r    k++++t++ s+kiRt
  CCD26503.1 262 EFKPDEVRIDIMRARGKGGQHVNTTDSAVRLTHLPTG-IVVSMQDERSQHKNKAKAYAILRARLLDKEQREKDEKERSLR----KDQVTTTDrSDKIRT 355
                 56899********************************.8*************************8875555555444444....357899999****** PP

                 EECGCTTEEEETT CS
        RF-1 104 ynkkpqsrvkdhr 116
                 yn+ pq+rv+dhr
  CCD26503.1 356 YNY-PQNRVTDHR 367
                 ***.********9 PP

>> MIR  MIR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.1    0.0064        23     110     150 ..      97     136 ..      64     145 .. 0.78
   2 !   11.3   0.2   6.4e-05      0.23     127     164 ..     276     313 ..     236     367 .. 0.65

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0064
         MIR 110 gfegdnDkveifekksttgmksaklvprdsyvrlqHvvtgc 150
                 +f++ n+ +++ e+++ t +++a+l  ++s+  l+H+++++
  CCD26503.1  97 SFNDCNELKQMIESDP-TLREEAELELKESTKQLSHASSQL 136
                 3433388899998776.68999***************9987 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 6.4e-05
         MIR 127 tgmksaklvprdsyvrlqHvvtgcwLhstsvklkkekf 164
                  g++ +++ + ds vrl H+ tg +++ +  + + +++
  CCD26503.1 276 RGKGGQHVNTTDSAVRLTHLPTGIVVSMQDERSQHKNK 313
                 55566666666666666666666666655554333322 PP

>> Turandot  Stress-inducible humoral factor Turandot
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00021      0.75       1      36 [.      74     109 ..      74     114 .. 0.90
   2 ?   -3.2   0.0       2.4   8.7e+03      11      23 ..     168     180 ..     150     186 .. 0.76

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00021
    Turandot   1 svDdatkikniqeliaiYekyssslqlspderekld 36 
                 +vD+++k++++ ++ +iYe+y +s ++ ++ ++ ++
  CCD26503.1  74 DVDNQKKYAKLSSICNIYENYMTSFNDCNELKQMIE 109
                 58**********************999988888776 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.4
    Turandot  11 iqeliaiYekyss 23 
                 +q l+++Y +y +
  CCD26503.1 168 TQDLLNMYINYCH 180
                 5777777777665 PP

>> PEX11  Peroxisomal biogenesis factor 11 (PEX11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   7.1e-05      0.26     114     178 ..      74     138 ..      68     144 .. 0.78
   2 ?   -1.8   0.4       0.5   1.8e+03     149     168 ..     304     336 ..     297     360 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 7.1e-05
       PEX11 114 kvknakklsrlssrfwlfglvlslvrdlyelrllqekekklkkekkekeereeeklaavlkkrpa 178
                 +v+n+kk  +lss +  +  +++ ++d++el+++ e+  +l++e++ + +++ ++l++ + +  +
  CCD26503.1  74 DVDNQKKYAKLSSICNIYENYMTSFNDCNELKQMIESDPTLREEAELELKESTKQLSHASSQLMK 138
                 7899**********************************999987744444444444444444444 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.5
       PEX11 149 ekekklkkek.............kekeereeek 168
                 + e++++k+k             ke+ e++e++
  CCD26503.1 304 QDERSQHKNKakayailrarlldKEQREKDEKE 336
                 444444444444555666555442222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1468  (0.0818785); expected 358.6 (0.02)
Passed bias filter:                      634  (0.0353617); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.59u 0.28s 00:00:00.87 Elapsed: 00:00:00.46
# Mc/sec: 2692.34
//
Query:       CCD26504.1  [L=1942]
Description: hypothetical protein NDAI_0H03310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.3e-48  164.2   0.0    7.7e-48  163.4   0.0    1.4  1  PP2C            Protein phosphatase 2C
    1.1e-40  137.2  81.0    1.2e-10   41.0   5.1    9.6  9  LRR_8           Leucine rich repeat
    9.8e-31  105.3  88.5    3.3e-05   24.1   0.7   12.2 12  LRR_4           Leucine Rich repeats (2 copies)
    3.9e-22   78.7   0.0    7.7e-22   77.8   0.0    1.4  1  Guanylate_cyc   Adenylate and Guanylate cyclase catalytic dom
    0.00083   18.9   5.3    0.00083   18.9   5.3    5.5  6  LRR_9           Leucine-rich repeat
    0.00086   19.0   0.1     0.0029   17.3   0.1    1.8  1  Ad_cyc_g-alpha  Adenylate cyclase G-alpha binding domain
  ------ inclusion threshold ------
        0.3   11.1  23.3       0.75    9.8   1.0    4.5  4  LRR_5           BspA type Leucine rich repeat region (6 copie


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.0     3e-51   7.7e-48       2     258 .]    1294    1537 ..    1293    1537 .. 0.91

  Alignments for each domain:
  == domain 1  score: 163.4 bits;  conditional E-value: 3e-51
                  EEEEEEECCCCSSHHEEEECCCCTCTT.CCCCCCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHCHTTH..HHHHHHHHHHHHHHHHHHHHHHHHC CS
        PP2C    2 dlgaselqgarksmedahislanless.sgkssvsffavfdghggseaakyarehleeilksqksfeele..kleqalrksfladtdeelksskant 95  
                  d+ +++++g +++++ ++++++n+++  ++++s  +  ++d +   +++ky +++ + ++k+   f+ le     + + +s+ +   ++ ++    t
  CCD26504.1 1294 DVTFERFRGKQDECLLCLHDSKNQNADyGHNISMIVRDIYDNILVKQLEKYGDSSDD-KIKRALRFSFLElnRQINRMLNSVDN-GTSVGNL----T 1384
                  678999******************999**************************9999.66666666666311555555555555.3444444....3 PP

                  .HCCT-EEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEECS---STTSHHHHHHHHHTT--EEECCEEETTTBSBSB-EE-GGGTCCCCCCSTSB CS
        PP2C   96 .epsksGstavvalirgtklyvAnvGDSravLcrkgnakkeltedHkpsdedEreRIeeaggsvsngegrvngsLavsRalGDlelkpketeeqlvs 191 
                   +++ sG +++v++i g+kly+An GD+ra+Lc++++++ +lt+ H ps+++E eRI+ +gg v+  +g++ g+++vsRa G+++l p      +++
  CCD26504.1 1385 sADLLSGVCSTVIYIKGKKLYTANIGDCRAMLCKNNGEYEMLTTEHIPSKREEYERIRISGGYVN--NGKLDGVVEVSRAVGFFDLLP------HIH 1473
                  379**************************************************************..*********************......9** PP

                  ---EEEEEEE-TTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCHHCHC CS
        PP2C  192 aePdvtsvklteedefliLacdGlwdvlsdqeavdlvrdelekkkspeevaeelvdeaiargsedni 258 
                  a+Pd++++++t  de +++a+  lw++++ +++ d+ r++ ++   p  +ae + d+  a+g +dni
  CCD26504.1 1474 AAPDISVTSFTGVDETVVIATNKLWEYMDVKTVSDISRENAND---PLLAAETMKDYVNAYGYSDNI 1537
                  ******************************************7...*******************97 PP

>> LRR_8  Leucine rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.54   1.4e+03      22      36 ..     727     741 ..     711     768 .. 0.64
   2 !   35.2   7.8   2.9e-12   7.5e-09       3      61 .]     779     835 ..     778     835 .. 0.96
   3 !   25.5   4.1   3.1e-09     8e-06      19      61 .]     840     881 ..     839     881 .. 0.94
   4 !   23.3   2.6   1.6e-08   4.1e-05       1      61 []     891     943 ..     891     943 .. 0.96
   5 !   41.0   5.1   4.5e-14   1.2e-10       2      61 .]     961    1019 ..     960    1019 .. 0.98
   6 !   15.1   3.9   5.6e-06     0.014      10      60 ..    1016    1063 ..    1015    1064 .. 0.82
   7 !   16.9   5.8   1.5e-06    0.0039      21      61 .]    1104    1142 ..    1098    1142 .. 0.91
   8 !   25.4   1.9   3.5e-09   9.1e-06       2      61 .]    1131    1189 ..    1130    1189 .. 0.97
   9 ?   -0.1   0.0      0.32   8.3e+02      24      36 ..    1205    1217 ..    1198    1225 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.54
                 TT-TT--EEE--SS- CS
       LRR_8  22 kglsnLkvLdLsnNl 36 
                 ++ s  ++Ld snN 
  CCD26504.1 727 QHTSEIESLDVSNNA 741
                 447777888888884 PP

  == domain 2  score: 35.2 bits;  conditional E-value: 2.9e-12
                 -SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   3 LtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 L +L L++N ++ ++++  k l+nL++L+L +N+l++ls   f++L++L+ LdLs+N++
  CCD26504.1 779 LVTLELQRNFIKRVPKSISK-LTNLTILNLQCNELERLS-SGFANLKNLQLLDLSSNKF 835
                 899**************999.*****************8.*****************85 PP

  == domain 3  score: 25.5 bits;  conditional E-value: 3.1e-09
                 TSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8  19 eaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 e+ ++++nL  +dLs+N+++ l p+++ +L +L +++Ls+N+L
  CCD26504.1 840 EVINSCKNLLQIDLSYNKIQNL-PQSINNLVKLAKINLSHNKL 881
                 667899****************.9*****************98 PP

  == domain 4  score: 23.3 bits;  conditional E-value: 1.6e-08
                 TT-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   1 pnLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61 
                 +nL++L+L+ Nr  s++ +a +    L+ L L++N+++t++    ++Lp+Lr L L+ N++
  CCD26504.1 891 TNLRTLNLRYNRVASIKSSAAN----LQNLFLTDNRISTFE----DSLPKLRALELQENPI 943
                 59****************9998....**************9....**************87 PP

  == domain 5  score: 41.0 bits;  conditional E-value: 4.5e-14
                  T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  +LtsL+Ls+ +l++l+  +Fk+ls+L+ L+Ls+N+l++l p  +++L++L +L   +N+L
  CCD26504.1  961 HLTSLSLSKAKLSHLPGNVFKNLSKLEKLELSENNLSRL-PVEIASLSKLVYLSAARNKL 1019
                  8**************************************.9*****************97 PP

  == domain 6  score: 15.1 bits;  conditional E-value: 5.6e-06
                  TS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS- CS
       LRR_8   10 nNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNr 60  
                  +N+l++l+ e F++l+nL++Ld+  N+++ +  + +++   L++L++s+N 
  CCD26504.1 1016 RNKLEGLPSE-FSNLKNLRSLDIHTNNIREFF-DGMENI-ELTFLNISSNA 1063
                  5777777766.666****************95.677777.7999****996 PP

  == domain 7  score: 16.9 bits;  conditional E-value: 1.5e-06
                  STT.-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8   21 Fkg.lsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  F++ ++nLk L+Ls+N+ + +   +f +L++L++ + sgN+L
  CCD26504.1 1104 FFNcFKNLKLLNLSYNNFSDI---SFLSLEHLTEFYFSGNKL 1142
                  55559****************...6***************98 PP

  == domain 8  score: 25.4 bits;  conditional E-value: 3.5e-09
                  T-SEEE-TTS--SEE-TTSSTT-TT--EEE--SS---GGGGGGGTT--S-.EEE--SS-- CS
       LRR_8    2 nLtsLdLsnNrltslddeaFkglsnLkvLdLsnNllttlspgafsgLpsLrsLdLsgNrL 61  
                  +Lt+ + s N+l+ ld ++  +++ +k+L L++N+l +l p  +s+L++L  Ld+ +N+L
  CCD26504.1 1131 HLTEFYFSGNKLNTLDGDTVVKWKYMKTLMLNRNQLLSL-PTELSQLSQLAILDVGSNQL 1189
                  899999*********************************.9*****************98 PP

  == domain 9  score: -0.1 bits;  conditional E-value: 0.32
                  -TT--EEE--SS- CS
       LRR_8   24 lsnLkvLdLsnNl 36  
                  ++ Lk+L+ s N+
  CCD26504.1 1205 NKELKYLNFSGNR 1217
                  5789999999984 PP

>> LRR_4  Leucine Rich repeats (2 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.1     0.031        80       3      30 ..     732     764 ..     710     776 .. 0.64
   2 !   18.1   2.0   1.1e-06    0.0027       2      40 ..     778     816 ..     778     821 .. 0.87
   3 !   17.5   7.6   1.6e-06     0.004       1      40 [.     823     862 ..     823     868 .. 0.86
   4 !   24.1   0.7   1.3e-08   3.3e-05       2      39 ..     870     906 ..     869     910 .. 0.85
   5 !   16.0   1.4   4.8e-06     0.012       2      39 ..     912     946 ..     911     953 .. 0.88
   6 !   12.8   2.9   4.8e-05      0.12       1      35 [.     960     996 ..     960    1003 .. 0.88
   7 !   21.9   0.6   6.4e-08   0.00016       2      38 ..    1008    1044 ..    1007    1051 .. 0.85
   8 ?    2.7   0.2     0.073   1.9e+02      11      39 ..    1040    1064 ..    1040    1071 .. 0.65
   9 ?    1.7   0.1      0.15   3.7e+02       2      20 ..    1053    1071 ..    1052    1078 .. 0.72
  10 !   20.8   4.2   1.5e-07   0.00038       1      40 [.    1109    1146 ..    1109    1147 .. 0.91
  11 !    8.8   2.7    0.0009       2.3       4      36 ..    1157    1189 ..    1156    1196 .. 0.85
  12 !    7.0   0.4    0.0031       8.1       2      30 ..    1207    1247 ..    1206    1259 .. 0.76

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.031
                 --EEE--SS-.....--E-S-HHH-TT--EEE- CS
       LRR_4   3 LevLdLsnNq.....ltdiplleklpnLkeLdL 30 
                  e+Ld snN      l  i++  kl +L+ +++
  CCD26504.1 732 IESLDVSNNAniflpLEFIESAIKLSSLRMVNI 764
                 466777777445655555555446777777776 PP

  == domain 2  score: 18.1 bits;  conditional E-value: 1.1e-06
                 S--EEE--SS---E-S-.HHH-TT--EEE-.-S-----GG CS
       LRR_4   2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdld 40 
                 +L +L L+ N ++ +p  ++kl+nL+ L+L ++n +++l+
  CCD26504.1 778 KLVTLELQRNFIKRVPKsISKLTNLTILNL-QCNELERLS 816
                 6889*************6668*********.999999995 PP

  == domain 3  score: 17.5 bits;  conditional E-value: 1.6e-06
                 SS--EEE--SS---E-S-.HHH-TT--EEE-.-S-----GG CS
       LRR_4   1 pnLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitdld 40 
                 +nL+ LdLs+N+ t  p  +++++nL ++dLs N +i++l+
  CCD26504.1 823 KNLQLLDLSSNKFTQYPEvINSCKNLLQIDLSYN-KIQNLP 862
                 79*************9998888*********999.666653 PP

  == domain 4  score: 24.1 bits;  conditional E-value: 1.3e-08
                 S--EEE--SS---E-S-HHH-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdl 39 
                 +L +++Ls+N+l  i+ l++++nL++L+L  N ++ ++
  CCD26504.1 870 KLAKINLSHNKLEAINDLSGMTNLRTLNLRYN-RVASI 906
                 67789************************555.77776 PP

  == domain 5  score: 16.0 bits;  conditional E-value: 4.8e-06
                 S--EEE--SS---E-S-HHH-TT--EEE-.-S-----G CS
       LRR_4   2 nLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdl 39 
                 nL++L L +N++++  +  +lp+L+ L L +N +it++
  CCD26504.1 912 NLQNLFLTDNRIST--FEDSLPKLRALELQEN-PITSI 946
                 9************9..5448*********777.99998 PP

  == domain 6  score: 12.8 bits;  conditional E-value: 4.8e-05
                 SS--EEE--SS---E-S-..HHH-TT--EEE-.-S-- CS
       LRR_4   1 pnLevLdLsnNqltdipl..leklpnLkeLdLsgNnl 35 
                 ++L++L+Ls  +l+ +p+  +++l +L++L Ls+Nnl
  CCD26504.1 960 THLTSLSLSKAKLSHLPGnvFKNLSKLEKLELSENNL 996
                 68****************99999***********944 PP

  == domain 7  score: 21.9 bits;  conditional E-value: 6.4e-08
                  S--EEE--SS---E-S-.HHH-TT--EEE-.-S----- CS
       LRR_4    2 nLevLdLsnNqltdipl.leklpnLkeLdLsgNnlitd 38  
                  +L +L+ + N+l  +p+ +++l+nL++Ld++ N +i+ 
  CCD26504.1 1008 KLVYLSAARNKLEGLPSeFSNLKNLRSLDIHTN-NIRE 1044
                  7899*************9999*********555.6654 PP

  == domain 8  score: 2.7 bits;  conditional E-value: 0.073
                  S---E-S-HHH-TT..--EEE-.-S-----G CS
       LRR_4   11 Nqltdiplleklpn..LkeLdLsgNnlitdl 39  
                  N++++  ++ ++ n  L+ L++s+N     +
  CCD26504.1 1040 NNIRE--FFDGMENieLTFLNISSN----AF 1064
                  56666..666677766888999888....33 PP

  == domain 9  score: 1.7 bits;  conditional E-value: 0.15
                  S--EEE--SS---E-S-HH CS
       LRR_4    2 nLevLdLsnNqltdiplle 20  
                   L++L++s+N   ++++  
  CCD26504.1 1053 ELTFLNISSNAFGSLESED 1071
                  5899999999988888744 PP

  == domain 10  score: 20.8 bits;  conditional E-value: 1.5e-07
                  SS--EEE--SS---E-S-HHH-TT--EEE-.-S-----GG CS
       LRR_4    1 pnLevLdLsnNqltdiplleklpnLkeLdLsgNnlitdld 40  
                  +nL+ L+Ls N+ +di++l+ l +L+e++ sgN ++++ld
  CCD26504.1 1109 KNLKLLNLSYNNFSDISFLS-LEHLTEFYFSGN-KLNTLD 1146
                  79******************.************.666665 PP

  == domain 11  score: 8.8 bits;  conditional E-value: 0.0009
                  -EEE--SS---E-S-.HHH-TT--EEE-.-S--- CS
       LRR_4    4 evLdLsnNqltdipl.leklpnLkeLdLsgNnli 36  
                  ++L L+ Nql ++p  l++l +L  Ld+ g n++
  CCD26504.1 1157 KTLMLNRNQLLSLPTeLSQLSQLAILDV-GSNQL 1189
                  79*************9999*********.55577 PP

  == domain 12  score: 7.0 bits;  conditional E-value: 0.0031
                  S--EEE--SS-...........--.E-S-HHH-TT--EEE- CS
       LRR_4    2 nLevLdLsnNq...........lt.diplleklpnLkeLdL 30  
                   L++L++s+N+           +  d++ l  lpnLk+L L
  CCD26504.1 1207 ELKYLNFSGNRrfeirsftsheINaDLSDLTILPNLKVLGL 1247
                  79*******999**888888885555555555******987 PP

>> Guanylate_cyc  Adenylate and Guanylate cyclase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0     3e-25   7.7e-22       5     150 ..    1581    1736 ..    1578    1757 .. 0.91

  Alignments for each domain:
  == domain 1  score: 77.8 bits;  conditional E-value: 3e-25
  Guanylate_cyc    5 sydevtilFadIvgftalssahspievvklLnelyarfdelldekkvykvktiGdaymvvsglpeekaahaaklaelaLdmleal.eevavesk 97  
                     ++ + +++F+dI+++ +l++     ++ ++L  ++  ++++l+ +++y++kt Gda+++++ +p   ++++ ++++ +L++l+ +  e  ++s 
     CCD26504.1 1581 PTGNLALVFTDIQSSSTLWELY-YAAMSTALSIHNDLMRRQLRIYGGYEIKTEGDAFVMAFPTP---TSALLWCLSTQLKLLDVAwPEEITSSP 1670
                     68899***************88.889**************************************...******************755555552 PP

  Guanylate_cyc   98 ..............eglkvrvGihtGpvvagviGakkprydvwGntvnlAsrmestgkagkiqvsee 150 
                                   +gl vr Gih G+ ++  +  ++ r+d+ G  vn Asr+  +gk+g+i +s++
     CCD26504.1 1671 ngrlvvdsqgkrifNGLCVRMGIHWGSPLTVFD-LVTQRMDYLGPVVNKASRVSDVGKGGQITLSSD 1736
                     57999**********************999999.99***************************9876 PP

>> LRR_9  Leucine-rich repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   4.5    0.0062        16      65     130 ..     778     840 ..     764     860 .. 0.80
   2 !   18.9   5.3   3.2e-07   0.00083      13     127 ..     839     945 ..     831     949 .. 0.87
   3 !    5.3   0.5    0.0048        12      65     124 ..     961    1018 ..     951    1024 .. 0.89
   4 ?   -0.5   0.2       0.3   7.6e+02      59     109 ..    1025    1073 ..    1017    1121 .. 0.67
   5 !    4.4   0.6    0.0091        23      49     125 ..    1116    1189 ..    1106    1223 .. 0.67
   6 ?   -2.1   0.0       0.9   2.3e+03     104     128 ..    1231    1255 ..    1216    1267 .. 0.77

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0062
       LRR_9  65 rlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpvtnkke 130
                 +l tl l+ n i r+ + +++ l nl+ l l+ nel++l+    +a+lk+l+ll l +n  t+ +e
  CCD26504.1 778 KLVTLELQRNFIKRVPKSISK-LTNLTILNLQCNELERLSS--GFANLKNLQLLDLSSNKFTQYPE 840
                 688999*********999975.789**************98..89999999999999988876554 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 3.2e-07
       LRR_9  13 aqyinairer.eldlrgykipvienlGatldqfdtidlsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPla 110
                  + in++++  ++dl  +ki  +      l ++  i+ls n++  ++++  +  l+tl l  nr+  i+     +  nl++l lt+n++  + d     
  CCD26504.1 839 PEVINSCKNLlQIDLSYNKIQNLPQSINNLVKLAKINLSHNKLEAINDLSGMTNLRTLNLRYNRVASIK----SSAANLQNLFLTDNRISTFED----- 928
                 5678888874378999999888888788888999*******************************9876....56789****************..... PP

       LRR_9 111 slkklellsllknpvtn 127
                 sl+kl+ l l +np+t+
  CCD26504.1 929 SLPKLRALELQENPITS 945
                 99999999999999985 PP

  == domain 3  score: 5.3 bits;  conditional E-value: 0.0048
       LRR_9   65 rlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknp 124 
                   l +l+l++ ++ ++  ++ + l +le+l l++n+l +l     +asl+kl +ls  +n 
  CCD26504.1  961 HLTSLSLSKAKLSHLPGNVFKNLSKLEKLELSENNLSRLPV--EIASLSKLVYLSAARNK 1018
                  688999*********************************76..68999999999988876 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.3
       LRR_9   59 gfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPl 109 
                  +f  lk l++l +  n i+   +g+e++  +l+ l +++n + +l   d +
  CCD26504.1 1025 EFSNLKNLRSLDIHTNNIREFFDGMENI--ELTFLNISSNAFGSLESEDTF 1073
                  355799999999******9999999986..677777778877777665555 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.0091
       LRR_9   49 lsdndirkldgfPllkrlktlllnnnrivriaegleevlPnleelvltnnelqeladldPlaslkklellsllknpv 125 
                  ls n+  ++  f  l+ l  ++++ n++  +  +       +++l+l+ n+l +l +   l +l++l +l + +n +
  CCD26504.1 1116 LSYNNFSDIS-FLSLEHLTEFYFSGNKLNTLDGDTVVKWKYMKTLMLNRNQLLSLPT--ELSQLSQLAILDVGSNQL 1189
                  5555555553.5566777777777777777777777777777777777777777765..455555555555544444 PP

  == domain 6  score: -2.1 bits;  conditional E-value: 0.9
       LRR_9  104 adldPlaslkklellsllknpvtnk 128 
                  adl  l+ l++l++l l++ ++ ++
  CCD26504.1 1231 ADLSDLTILPNLKVLGLMDVTLNTN 1255
                  5777888899999999988777554 PP

>> Ad_cyc_g-alpha  Adenylate cyclase G-alpha binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   1.1e-06    0.0029       5      35 ..     250     281 ..     246     291 .. 0.81

  Alignments for each domain:
  == domain 1  score: 17.3 bits;  conditional E-value: 1.1e-06
  Ad_cyc_g-alpha   5 ptDrtd.ggtvfhLDTnLndMeGIlskppPlt 35 
                     +t++++  + +f LDTnL++++ I++ + P  
      CCD26504.1 250 NTEENEeIPALFPLDTNLENLDEITKAVAPIK 281
                     5555534899*****************99975 PP

>> LRR_5  BspA type Leucine rich repeat region (6 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   6.4   0.00097       2.5      28     116 ..     794     884 ..     763     892 .. 0.74
   2 ?    8.3   6.0   0.00081       2.1      23      96 ..     813     886 ..     790     919 .. 0.50
   3 ?    9.8   1.0   0.00029      0.75      12     111 ..     961    1061 ..     941    1076 .. 0.68
   4 ?    1.9   0.6      0.08   2.1e+02      53      97 ..    1104    1148 ..    1100    1173 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.00097
       LRR_5  28 yaFsnctslksitlpsslteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsn.lttigssaFsncslesitips.svtki 116
                 ++ s+ t+l+ ++l+ +  e  s+ F+n ++l+ ++++s+  + + ++ ++c++l +i+l+ n ++++ +s+ +  +l +i+++  +++ i
  CCD26504.1 794 KSISKLTNLTILNLQCNELERLSSGFANLKNLQLLDLSSNKFTQYPEVINSCKNLLQIDLSYNkIQNLPQSINNLVKLAKINLSHnKLEAI 884
                 4556667777777777666666788999999*****999888888888888*******998654888888776667999999875255555 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00081
       LRR_5  23 tsIgeyaFsnctslksitlpsslteigsyaFsncssltsitips.sltsigeyaFsncsslkeitlpsn.lttigs 96 
                 +++ ++ F+n ++l+ ++l+s+  + + ++ ++c++l +i+++  +++++++++ +   +l +i+l++n l+ i++
  CCD26504.1 813 ERL-SSGFANLKNLQLLDLSSNKFTQYPEVINSCKNLLQIDLSYnKIQNLPQSINN-LVKLAKINLSHNkLEAIND 886
                 222.2335555555555555555555555555555555555543144444443333.5555555554432444444 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00029
       LRR_5   12 nltsitips.svtsIgeyaFsnctslksitlps.slteigsyaFsncssltsitipssltsigeyaFsncsslkeitlpsn.lttigssaFsncsle 105 
                   lts+++++ +++ +  ++F+n ++l++++l++ +l+ +  ++ s + +l  ++   +  +   + Fsn ++l+++++ +n ++++ +   +n +l+
  CCD26504.1  961 HLTSLSLSKaKLSHLPGNVFKNLSKLEKLELSEnNLSRLPVEIASLS-KLVYLSAARNKLEGLPSEFSNLKNLRSLDIHTNnIREFFDG-MENIELT 1055
                  45666666435667888888888888888887634777777776666.88888887766666667788888888888855413333332.3555566 PP

       LRR_5  106 sitips 111 
                   ++i+s
  CCD26504.1 1056 FLNISS 1061
                  666655 PP

  == domain 4  score: 1.9 bits;  conditional E-value: 0.08
       LRR_5   53 Fsncssltsitips.sltsigeyaFsncsslkeitlpsn.lttigss 97  
                  F nc  ++++++ + s++++++ +F + ++l+e+ ++ n l+t++ +
  CCD26504.1 1104 FFNC--FKNLKLLNlSYNNFSDISFLSLEHLTEFYFSGNkLNTLDGD 1148
                  6677..66777666678888888888888888888875447777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1942 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       821  (0.0457917); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.06u 0.29s 00:00:01.35 Elapsed: 00:00:00.50
# Mc/sec: 11741.32
//
Query:       CCD26505.1  [L=712]
Description: hypothetical protein NDAI_0H03320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.6e-59  199.9   0.0      6e-59  199.2   0.0    1.3  1  DUF676      Putative serine esterase (DUF676)
    0.00075   19.4   0.0     0.0019   18.1   0.0    1.7  1  Lipase_3    Lipase (class 3)
  ------ inclusion threshold ------
      0.035   13.3   0.0      0.066   12.4   0.0    1.4  1  LCAT        Lecithin:cholesterol acyltransferase
        0.1   12.3   0.0       0.36   10.5   0.0    1.9  1  PGAP1       PGAP1-like protein
          2    8.8   6.0        5.1    7.5   6.0    1.6  1  Phage_Gp23  Protein gp23 (Bacteriophage A118)


Domain annotation for each model (and alignments):
>> DUF676  Putative serine esterase (DUF676)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.2   0.0   1.7e-62     6e-59       3     214 ..     198     391 ..     196     396 .. 0.95

  Alignments for each domain:
  == domain 1  score: 199.2 bits;  conditional E-value: 1.7e-62
      DUF676   3 kkdhLvVlvHGlqgn.saDlelikeqlekikeklpeekieflmsennesktfkgidvlgerlaeevlevvkkkkdknkkiSfvghSlGgliaraaiakl 100
                  k+hLv+l+HGl++n ++D+e+++eq++k +ek+p+e i++ ++ +n+++t+kg+++lg r+a+++++ +++++    kiSf+ghSlGgl++++aia++
  CCD26505.1 198 RKKHLVILTHGLHSNvTTDMEYMMEQIYKSQEKYPNETIIVDGFPGNVCRTEKGVKYLGSRVAKYIIDNLYDDSVV--KISFIGHSLGGLVQTFAIAYI 294
                 689**********************************************************************999..*******************99 PP

      DUF676 101 kekemtlkeaikglepvtfitlasPhLGvlysskslinlglalleklkkslsmeqlgltGrdLflkddkdeknsllykllkdekdlkliealklFkrrv 199
                   +   ++++++++ p++fit+asP+LG+++++++          ++k  ls++ +g+tG+dL lk+ + ++++lly l   e+   +   l++Fkrr+
  CCD26505.1 295 AVN---YPWFFEKVTPINFITFASPLLGIVTDNPA----------YVKLLLSFGVIGKTGQDLGLKNINGSDKPLLYLL-PGEP---VRTILSKFKRRT 376
                 944...5799*************************..........******************************9999.5555...8888899***** PP

      DUF676 200 lyanvvndrivplas 214
                 lyan++nd+ivpl++
  CCD26505.1 377 LYANAINDGIVPLYT 391
                 **************9 PP

>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.3e-07    0.0019      46     108 ..     254     319 ..     194     323 .. 0.70

  Alignments for each domain:
  == domain 1  score: 18.1 bits;  conditional E-value: 5.3e-07
                 -HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHHHHHHHTT-SS...---EEEEEES----B CS
    Lipase_3  46 slreqvlkelkrllekypeysivvtGHSLGgalAlLaaldlvengene...kkkvtvvtfGqPrvg 108
                  l + v k + + l     ++i + GHSLGg + ++a ++++ n++       +++ +tf++P  g
  CCD26505.1 254 YLGSRVAKYIIDNLYDDSVVKISFIGHSLGGLVQTFAIAYIAVNYPWFfekVTPINFITFASPLLG 319
                 44455555555555555669*************************75577799**********876 PP

>> LCAT  Lecithin:cholesterol acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.9e-05     0.066     109     168 ..     261     323 ..     250     441 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.9e-05
        LCAT 109 kelieealklsgkkvvliaHSmGnllvlyflkwv.eaeaWvdqhik..afislgapllGsvka 168
                 k  i++ ++ s  k+  i+HS+G+l+    +  + +++ W  +++    fi  ++pllG v  
  CCD26505.1 261 KYIIDNLYDDSVVKISFIGHSLGGLVQTFAIAYIaVNYPWFFEKVTpiNFITFASPLLGIVTD 323
                 678999999999*************99888876515666******85579*********7643 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   9.9e-05      0.36      79     129 ..     264     317 ..     248     332 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9.9e-05
       PGAP1  79 IlslysssekeptsviliGHSmGGivaraaltlkn....yikqsvn..tiltlasPh 129
                 I +ly   +    ++  iGHS+GG+v   a+ + +       ++v+  + +t asP+
  CCD26505.1 264 IDNLY---DDSVVKISFIGHSLGGLVQTFAIAYIAvnypWFFEKVTpiNFITFASPL 317
                 44577...77788999*********98776655443334233444412346666665 PP

>> Phage_Gp23  Protein gp23 (Bacteriophage A118)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   6.0    0.0014       5.1      50      78 ..     607     633 ..     597     648 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0014
  Phage_Gp23  50 eerekkeekrekkekeskeekdktissvd 78 
                 ee ek eek+e+keke +  k+  + s+d
  CCD26505.1 607 EEEEKEEEKEEEKEKEKE--KENALVSMD 633
                 467777777777777655..555556665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1446  (0.0806515); expected 358.6 (0.02)
Passed bias filter:                      843  (0.0470188); expected 358.6 (0.02)
Passed Vit filter:                       110  (0.00613531); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 4674.62
//
Query:       CCD26506.1  [L=672]
Description: hypothetical protein NDAI_0H03330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.6e-89  300.0  32.4    3.6e-89  300.0  32.4    1.7  2  RINT1_TIP1      RINT-1 / TIP-1 family
  ------ inclusion threshold ------
       0.52   10.4   4.2       0.43   10.7   0.4    2.6  2  Suppressor_APC  Adenomatous polyposis coli tumour suppressor 
        1.9    8.1   4.2         16    5.1   0.3    2.6  3  Polyoma_coat2   Polyomavirus coat protein
        2.9    8.2   9.0        1.8    8.9   0.4    3.7  3  Osmo_CC         Osmosensory transporter coiled coil


Domain annotation for each model (and alignments):
>> RINT1_TIP1  RINT-1 / TIP-1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   1.1      0.33   1.5e+03     272     299 ..      68     102 ..      19     198 .. 0.53
   2 !  300.0  32.4   7.9e-93   3.6e-89       1     499 []     215     666 ..     215     666 .. 0.93

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.33
  RINT1_TIP1 272 aledwsdevfFieLweelqerakknee.......s 299
                   e++++  +F +L + + + + ++++       +
  CCD26506.1  68 LKEKYGNLQIFQRLEDFYRKQEVHDSNlrkldelN 102
                 33444444444444444422211111122222220 PP

  == domain 2  score: 300.0 bits;  conditional E-value: 7.9e-93
  RINT1_TIP1   1 LplevlvkplekrFrYHFsgdkqTnklskpewflefilklleknldflrenvqpilakkfrekidav.sefitaLlplvreKvasvleevlsdpalLsh 98 
                 +++++l++++++rF YHF+     +++s++e+++++++++l++nl+++++++++  ++++ +k + + ++fi+++l+++reKv+s+l++  +d+++L+ 
  CCD26506.1 215 WNFKCLANNFNIRFIYHFH-----DSTSNIETYFRYLNEYLTTNLYKCINLFHD--QTNGLTK-QLIhEQFINYVLEPIREKVQSTLSQ--NDSKTLII 303
                 9******************.....68999*************************..8888998.55589******************99..9999**** PP

  RINT1_TIP1  99 lisellsfdkeLrekykYdaeekwkgLtselLdqekvfekWlevEkefalerfeeIisskdaweidyDsveskktkptksavrvvdLLesiteryepls 197
                 lis+++s+dk+L ++++Y+    +kgL+s lL++e  ++kW+++E ++++++fe+I++ ++                +++a+++++LL++i++++ep++
  CCD26506.1 304 LISQIISTDKNLLKSFHYQ----GKGLAS-LLTDE-LWDKWIQFEVTTSTRQFETITNDPNDL--------------PDTAADFIKLLNKIYDYLEPFY 382
                 *******************....9****8.99987.9************************44..............9********************* PP

  RINT1_TIP1 198 sfsy......klkflsdIqlelldqYherLkssleayesltstvgrtlqgetkeqqaelegvkglerlckiygsakylenaledwsdevfFieLweelq 290
                 +++       kl ++s+I+++l++ Y++++  +             + ++ tk q+        +++++k+++ ++++++++ ++s +++F++L++ ++
  CCD26506.1 383 DLESesiqryKLITCSQIFMNLTSAYLDYVLTVD-----------YLGEKRTKMQEL-------YQTMIKMQN-LHLVYKKIYHLSGKPIFVHLTNIVN 462
                 **99999999********************5555...........333334676666.......*********.************************* PP

  RINT1_TIP1 291 erakkneestavgseeegalFdetiaaydrlrkr.aeelivealkkeikealkaYvnksqWsslssssesslsvsselvellnllkrlldfLekal.sk 387
                 e+++k+++s          lF++++++y++ +++ ++++i+++++k+ike+l++Y+++  Ws ++++++++++vsselv ++n++++ ++ L+++  ++
  CCD26506.1 463 EKESKRYNS----------LFQDILRDYRKNMEDdIQNSIIHRIQKQIKESLRNYFKIGSWSVMEKNNDTPMAVSSELVTVINAMNEIISRLDSLEmPY 551
                 *99999999..........**********999888********************************999************************988** PP

  RINT1_TIP1 388 alfrriwrelleklqdllweevllrnkFseaGaaQlarDvealfalvdryik..elklkkLkealkLlnlkvesalsLkealervftd.eakklleelg 483
                 +l  +i++ell+++ ++++e++l+ nkF++ G+ Q+++D+e+l ++++  ++  +++  k+   l++ln+k++++l  k ++++  +  +  +l+++l+
  CCD26506.1 552 ELQLNIKNELLNIIVNYFIESILKLNKFNQYGLLQFKLDYETLKTTLQLPTHsnNSQDYKILRLLQILNIKYDNELYSKYVSKEYIKMaNFDNLRHDLS 650
                 *********************************************776666666899999*************76666666666665556889****** PP

  RINT1_TIP1 484 lekLseseardvLerr 499
                 +++Ls+++++d L+r+
  CCD26506.1 651 ITNLSDTDIQDGLYRI 666
                 **************97 PP

>> Suppressor_APC  Adenomatous polyposis coli tumour suppressor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.4   9.5e-05      0.43      21      75 ..      14      66 ..      11      71 .. 0.93
   2 ?   -0.6   0.3      0.32   1.4e+03      45      78 ..     107     128 ..      73     138 .. 0.50

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 9.5e-05
  Suppressor_APC 21 gLeaveraRdWylqqlrevqerqkslgkvetqfdlqtdliqerlefelariqevn 75
                    ++++v+++Rd    ql++   +q+ +++++++ + q+++i +++e++++ i e+ 
      CCD26506.1 14 EIQKVQKQRDSLIVQLKT--AQQNTIPNNDSNHENQAESIANDIEYNANNIVEIK 66
                    899**************9..8899*************************999875 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.32
  Suppressor_APC  45 slgkvetqfdlqtdliqerlefelariqevnrel 78 
                     +l            ++qe+  f+++ +++v  el
      CCD26506.1 107 QL------------SQQEPKDFNIEELTKVSSEL 128
                     22............23444444444444444444 PP

>> Polyoma_coat2  Polyomavirus coat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.67     3e+03     229     276 ..      16      62 ..       8      68 .. 0.69
   2 ?    5.1   0.3    0.0036        16     208     279 ..      75     144 ..      61     146 .. 0.87
   3 ?    3.7   0.1    0.0093        42     156     210 ..     468     522 ..     401     546 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.67
  Polyoma_coat2 229 vRqvarregeevalgesqresideadseqekkqrkelkkpevqsgeyi 276
                    +++ ++r    v+l  +q++ i+++ds++e+++ + + ++ +  +++i
     CCD26506.1  16 QKVQKQRDSLIVQLKTAQQNTIPNNDSNHENQA-ESIANDIEYNANNI 62 
                    445567788888899999999999998887777.55555555555544 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0036
  Polyoma_coat2 208 velYsslqdYYseLpainpaqvRqvarregeevalgesqresideadseqekkqrkelkkpevqsgeyieky 279
                     +++++l+d+Y++   ++ +  R++++ + e  +l + ++++ + ++ +++  + kel+++  qs++ iek+
     CCD26506.1  75 LQIFQRLEDFYRKQ-EVHDSNLRKLDELNDEIAQLSQQEPKDFNIEELTKVSSELKELESE-LQSTNDIEKV 144
                    6799*********8.89999*******8888788888899999999999999998899876.9999999997 PP

  == domain 3  score: 3.7 bits;  conditional E-value: 0.0093
  Polyoma_coat2 156 LfeavgraiWelvreeqkqitsrelaerttkslsdtlarllEnarWavtnlpvel 210
                     ++++ + i +  r++++    + + +r +k+++++l +++    W v++   ++
     CCD26506.1 468 RYNSLFQDILRDYRKNMEDDIQNSIIHRIQKQIKESLRNYFKIGSWSVMEKNNDT 522
                    4555555555555555555556777788889999999999999999999876665 PP

>> Osmo_CC  Osmosensory transporter coiled coil
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.4    0.0004       1.8      24      41 ..      11      28 ..       6      28 .. 0.91
   2 ?   -2.4   0.1       1.4   6.1e+03      17      35 ..      55      72 ..      53      77 .. 0.65
   3 ?    2.6   0.4     0.038   1.7e+02      11      34 ..      88     111 ..      87     116 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0004
                HHHHHHHHHHHHHHHHHH CS
     Osmo_CC 24 ideeIaaLeekRqrLvdq 41
                id eI++ +++R++L+ q
  CCD26506.1 11 IDDEIQKVQKQRDSLIVQ 28
                9**************966 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.4
                HHHHHHHHHHHHHHHHHHH CS
     Osmo_CC 17 IEqkvedideeIaaLeekR 35
                IE + ++i  eI++L+ek 
  CCD26506.1 55 IEYNANNI-VEIKKLKEKY 72
                55555555.4788998875 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.038
                 XXXXTHHHHHHHHHHHHHHHHHHH CS
     Osmo_CC  11 qehYdnIEqkvedideeIaaLeek 34 
                 qe +d+  +k+++++ eIa+L ++
  CCD26506.1  88 QEVHDSNLRKLDELNDEIAQLSQQ 111
                 677888889************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2175  (0.121312); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.29s 00:00:01.00 Elapsed: 00:00:00.45
# Mc/sec: 4479.91
//
Query:       CCD26507.1  [L=269]
Description: hypothetical protein NDAI_0H03340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.9e-12   46.1   0.1    6.7e-12   45.7   0.1    1.2  1  EMP24_GP25L  emp24/gp25L/p24 family/GOLD


Domain annotation for each model (and alignments):
>> EMP24_GP25L  emp24/gp25L/p24 family/GOLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.1   3.8e-16   6.7e-12      34     177 ..     101     259 ..      53     260 .. 0.78

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 3.8e-16
  EMP24_GP25L  34 g.....aaldvdlsvkdpdgngerlvkkkdrese.gdfsftakesgeykvCfdnsfstkss......kkvsfdievgseasd.....ykdsakkekle 114
                  g      ++++ +++++ d++   l ++++ +++ + f+++  +  ++++Cf+n   + s+      k++++di +++ + +       +s ++e++ 
   CCD26507.1 101 GtsvdkGKQKLFFNLRSMDNDFSLLKSSRNLKTGiSMFEVNPMGMDTFEFCFQNFVFDGSWdsidsdKTIEIDISANDLE-NpalekFITSHFTEQIY 197
                  044544359999****999988888888777777678888888999*******************999999999995432.24666655577788888 PP

  EMP24_GP25L 115 t.leselkkleekldsikreqkylrereerlrdtnestnsrvvwwsilqllvlvlvavlqvyyL 177
                  t l++ +++l++ l+   ++   l   e  +rd+ne+t+s +++  i+ ++++ l++++q+y +
   CCD26507.1 198 TsLQENVDQLNDLLNVTIKH--ELLSVEGCHRDLNENTFSLMIKGGIFLTVIVCLMGLFQLYLI 259
                  88************986654..57899**********************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       530  (0.029561); expected 358.6 (0.02)
Passed bias filter:                      381  (0.0212505); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 2096.93
//
Query:       CCD26508.1  [L=265]
Description: hypothetical protein NDAI_0H03350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.3e-08   33.0   0.1    1.2e-07   32.3   0.1    1.3  1  RNase_PH    3' exoribonuclease family, domain 1
     0.0024   17.9   0.0     0.0053   16.8   0.0    1.6  1  RNase_PH_C  3' exoribonuclease family, domain 2
  ------ inclusion threshold ------
      0.042   14.2   0.4       0.13   12.6   0.3    1.9  2  MAP         MAP domain


Domain annotation for each model (and alignments):
>> RNase_PH  3' exoribonuclease family, domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.1   1.9e-11   1.2e-07       1     132 []      30     155 ..      30     155 .. 0.81

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 1.9e-11
                 EEEEEEEEESSSSTTSEEEEEEECC.EEEEEEEEEEEEEE-TCCG--CCEEEECCCCECCCCEC-C...S...HHHHHHHHHHHHHHCCTC-C...... CS
    RNase_PH   1 elRslsietgvlsqanGSaylelGd.tkvlasvtgpieerpseerddaegaldveveyapfasgerrregrpsdeeielsrlleralrpsill...... 92 
                 ++R+++i t++l++++GS+++   d  ++++s++  ++   s e +d    ++v++++a    ger      s   ++ls+l ++ l++   +      
  CCD26508.1  30 QFRPIEIFTNFLPSSDGSSRIIASDgSECIVSIKSKVVD-HSIE-NDL---VQVDINVA----GER----DDSIIVETLSSLMNKVLKSNKGIdtsklq 115
                 69*****************9877666***********87.4445.444...56777733....555....24555559999998888888886777777 PP

                 ..CGCCTCEEEEEEEEEECCCS-CHHHCHHHHHHHHHCTCEE CS
    RNase_PH  93 ..ekkpkstididitvlssdggslldalinaaslALadagip 132
                   +k+   +i id+ ++ss    + ++ + +++ AL+ +++p
  CCD26508.1 116 ltKKY-SFKIFIDVLIISSYS-YPASLISFSIFSALKATKLP 155
                 75555.5**************.******************98 PP

>> RNase_PH_C  3' exoribonuclease family, domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.9e-07    0.0053       2      63 ..     184     250 ..     183     254 .. 0.71

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 8.9e-07
                 --EEEEEEEETTEEEES--HHHHHHSSEEEEEEEETTS...EEEEEEEECSSC..EEHHHHHHHHHH CS
  RNase_PH_C   2 pviavtvgkvddqfvlDptkeEedlsegdltlavagtk...evvtlmkeggsq..ldeetlleaiel 63 
                 p+  +  ++v+d++ +Dp  +E +++++ l +++++ k    ++tl   +     +++  l+++i+l
  CCD26508.1 184 PPLVFVLAIVGDNIFIDPASNETEVANNGLIVTWSNGKvisPIKTLALNDRYIngFNPLLLKNGIKL 250
                 66677789**************************977744422222222332244777777777776 PP

>> MAP  MAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.71   4.2e+03      63      79 ..      53      69 ..      48      81 .. 0.76
   2 ?   12.6   0.3   2.2e-05      0.13      22      61 ..      86     125 ..      67     127 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.71
         MAP 63 knGskkvvdlkseikta 79
                 +Gs  +v +ks+  ++
  CCD26508.1 53 SDGSECIVSIKSKVVDH 69
                68888999999887654 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 2.2e-05
         MAP  22 nkskisykdlsskvKsvlksdrGiteedlklakkAvYtvy 61 
                  ++ i ++ lss +  vlks++Gi +++l+l+kk  ++++
  CCD26508.1  86 RDDSIIVETLSSLMNKVLKSNKGIDTSKLQLTKKYSFKIF 125
                 567889999*************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.21s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2061.72
//
Query:       CCD26509.1  [L=191]
Description: hypothetical protein NDAI_0H03360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-29  102.5  13.1    2.5e-15   56.9   5.7    2.1  2  Ribosomal_L6  Ribosomal protein L6
  ------ inclusion threshold ------
       0.13   12.2   0.1        1.8    8.6   0.0    2.5  2  CPT_N         Carnitine O-palmitoyltransferase N-terminus


Domain annotation for each model (and alignments):
>> Ribosomal_L6  Ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   5.7   2.8e-19   2.5e-15       1      76 []      12      85 ..      12      85 .. 0.93
   2 !   50.6   0.8   2.5e-17   2.3e-13       1      76 []      97     178 ..      97     178 .. 0.92

  Alignments for each domain:
  == domain 1  score: 56.9 bits;  conditional E-value: 2.8e-19
                  CSTTEEEEEETTTEEEEEESSEEEEEE-CTT.SEEEEEECSTEEEEEECSESCHHHHHHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6  1 iPvgvrvsikggqlvlvlGpkgeltreipeg.vtvevkvegnkvtvivvsgidkekvAligtvrslinnmikGVteg 76
                  iP+gv+v+ik+ ++v+v+Gp+g lt ++++  vt+  kv  + ++v+v +g++k+ +  ++tv+sl++nm+ GVt+g
    CCD26509.1 12 IPEGVTVNIKS-RIVKVTGPRGVLTKNLKHIdVTFN-KVSKDLIKVTVHNGDRKHVA-ALRTVKSLVDNMVIGVTKG 85
                  8*********6.******************856666.677889999999*******9.*****************98 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 2.5e-17
                   CSTTEEEEEET....TTEEEEEESSEEEEEE-CTTSEEEEEECSTEEEEEECSESCHHHH....HHHHHHHHHHHHHHHHHHTC CS
  Ribosomal_L6   1 iPvgvrvsikg....gqlvlvlGpkgeltreipegvtvevkvegnkvtvivvsgidkekv....AligtvrslinnmikGVteg 76 
                   +P++v+   k+     +++++lG k+ +t++++egv++e +   n++++iv+sg++ e+v    A+i++++++ n++i+++ +g
    CCD26509.1  97 FPINVNTIEKDgakfIEIRNFLGDKKVRTVPVREGVDIEYS--TNVKDEIVLSGNSVENVsqnaADIQQICRVRNKDIRKFLDG 178
                   6888765555559999***********************55..9*************************************998 PP

>> CPT_N  Carnitine O-palmitoyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.091   8.2e+02      15      27 ..      12      24 ..       8      27 .. 0.81
   2 ?    8.6   0.0    0.0002       1.8      17      35 ..     130     148 ..     128     151 .. 0.93

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.091
       CPT_N 15 tpdGidvqlsqea 27
                 p+G+ v++ + +
  CCD26509.1 12 IPEGVTVNIKSRI 24
                59*****998766 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0002
       CPT_N  17 dGidvqlsqeaLkeiylsg 35 
                 +G+d+++s+++  ei+lsg
  CCD26509.1 130 EGVDIEYSTNVKDEIVLSG 148
                 9****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1460.80
//
Query:       CCD26510.1  [L=377]
Description: hypothetical protein NDAI_0H03370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   2.3e-140  467.0   0.1   2.6e-140  466.8   0.1    1.0  1  Chorismate_synt  Chorismate synthase


Domain annotation for each model (and alignments):
>> Chorismate_synt  Chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  466.8   0.1  1.5e-144  2.6e-140       1     327 []       8     364 ..       8     364 .. 0.95

  Alignments for each domain:
  == domain 1  score: 466.8 bits;  conditional E-value: 1.5e-144
                      SEEEEE-SCCSSEEEEEEE---BT-B--HHHHHHHHHHHTCTSSSSSSHHHCS-EEEEESSEETTEE-SS-EEEEEE-TTS-..SSSSSTS.BE CS
  Chorismate_synt   1 lrvttfGeShgkalgavidgvpagleldeediqkeLdrRrpgqsklttqrkEkDeveilsGvfegktlGtpiallieNkdqrskdyeeike.vp 93 
                      ++vtt+GeSh+k++g+++dgvp+g++l+e+diq +L+rRrpgqskl+t+r+EkD+vei sG++ +ktlGtpia+li+N+dqr++dy++i++  p
       CCD26510.1   8 FKVTTYGESHCKSVGCIVDGVPPGMTLTEADIQPQLTRRRPGQSKLSTPRNEKDKVEIQSGIEFNKTLGTPIAMLIRNEDQRPNDYNDIMNkFP 101
                      89************************************************************77***********************9987368 PP

                      -TTSTCHHHHHHC-S.STHCCCCCTHHCHHHHHHHHHHHHHHHHT.TTEEEEEEEEEETTE....................CHHHHH.TT-BS- CS
  Chorismate_synt  94 RpgHADltyalkYgirdlrgggrsSaReTaarvaaGavakklLke.lgieivayvssigei....................ekeaen.pvrcpd 165
                      Rp+HAD+ty++kYgi++++gggr+SaReT++rvaaGa+a+k+Lk+  ++eiv++v++igei                    ek  +  p+rcpd
       CCD26510.1 102 RPSHADFTYSEKYGIQASSGGGRASARETIGRVAAGAIAEKFLKQvSNVEIVGFVTQIGEIkmernpfdpnfqhvlntitrEKVDSMgPIRCPD 195
                      *********************************************669***********88888888999999999998863344445****** PP

                      CCCHHHHHHHHHHHHHTT--B-EEEEEEEES--TT-SBTTTB-HHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHS--EE.......EE.SS CS
  Chorismate_synt 166 eeaaeemeeaieeakkegdslGgvvevvvkgvpaGlGepvfdkldakLakalmsipAvkgveiGsGfeaaelkGseanDeiv.......lr.kt 251
                      +++a +m ++ie+++ ++ds+Ggvv++vv+++p+GlGep+fdkl+a La+a++sipA kg+eiGsGf++++++Gs++nD ++       lr kt
       CCD26510.1 196 ASVAGDMVKEIEKYRGNQDSIGGVVTCVVRNLPTGLGEPCFDKLEAMLAHAMLSIPASKGFEIGSGFAGVSVPGSKHNDMFYydeeqkrLRtKT 289
                      **********************************************************************************7777655226** PP

                      -TTTTEETTEEBSS-EEEEEEE--SS--SSEEEEEBTTS-E-EEEE--S-S-S-THHHHHHHHHHHHHHHHHHHHH CS
  Chorismate_synt 252 nnaGGieGGisnGepivvrvavKpipsiakeqktvdletkeevelevkgrhDpcvvpravvvveamvalvladall 327
                      nn+GGi+GGisnGe+i+++v +K++++i++eqkt+++++ke   l++kgrhDp v+pra+++veam+alvladall
       CCD26510.1 290 NNSGGIQGGISNGENIYFSVPFKSVATISQEQKTATYDGKE-GVLAAKGRHDPAVTPRAIPIVEAMTALVLADALL 364
                      *****************************************.*******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       390  (0.0217525); expected 358.6 (0.02)
Passed bias filter:                      348  (0.0194099); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2696.81
//
Query:       CCD26511.1  [L=261]
Description: hypothetical protein NDAI_0H03380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-54  185.2   0.0    1.4e-54  184.8   0.0    1.2  1  Flavodoxin_2  Flavodoxin-like fold
    6.1e-14   52.0   0.0    1.6e-13   50.7   0.0    1.7  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.8   0.0   1.6e-58   1.4e-54       1     197 [.       8     215 ..       8     216 .. 0.92

  Alignments for each domain:
  == domain 1  score: 184.8 bits;  conditional E-value: 1.6e-58
                   -EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCC.T-----CCCCHC.............C.HHHHTT..CHHHHHHHHHHHHCSSE CS
  Flavodoxin_2   1 mkiLiinahprpeksfssalaqafvealekagphevtvrdLyad.flpvlttrdlaa.............k.layeek..padveseqiekllaada 80 
                   +k+Li+++hp+  ksf+++l++a v+ le++g  ev+v dLy++ +  ++t++d+ +                a +++  ++dv +eq ekl++ad+
    CCD26511.1   8 KKVLIVFGHPER-KSFNGSLLDATVKNLESQG-LEVKVSDLYRMnWKSEVTEDDFPEthekgtrlevapeSlAAFQNHklTPDVVAEQ-EKLEWADL 101
                   79**********.8******************.9*******************************9988624444444545*******.******** PP

                   EEEEEE-BTTB--HHHHHHHHHHS-TTTSCEETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHH.HHHHHHHTT-EEEEEEEEE CS
  Flavodoxin_2  81 ivlqfPlwwfgvPailKgwiDrvltagfafyteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpp.lrgilgfiGikdvepvlve 176
                   ++lqfPlww g+PailKgw+Drv++ag a+y +e+  +++g+++gkka+++v+tGg e++y++ g +g ++++ll+p  +g+l ++G++ ++p++ +
    CCD26511.1 102 VILQFPLWWTGFPAILKGWVDRVFSAGLAYYRPER--FGDGAFAGKKAMLMVSTGGAESHYSATGIHG-PINDLLFPiQHGMLFYTGMTILPPFVTY 195
                   ******************************98888..89***************************99.**************************** PP

                   SCTCCCHHHHHHHHHHHHHHH CS
  Flavodoxin_2 177 gvagaedeealaealerleel 197
                    + +++ ++++   le+l+++
    CCD26511.1 196 SAYNIT-DDKFNSILEDLYNH 215
                   977777.55588888887765 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   1.8e-17   1.6e-13       2     126 ..       9     162 ..       8     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: 50.7 bits;  conditional E-value: 1.8e-17
                 EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS..--......---HCHGHT...................CGGSHHHHHHHHHHHH-SCE CS
     FMN_red   2 kilvisGSlrkgsntrklaewaaealkeagaevelidladl.ilpc....alcdkdlese...................gqtsddvaellekiaaadal 76 
                 k+l+++G + ++s++  l+++  + l+ +g+ev++ dl  +  +      +++                          ++  +dv +  ek+++ad +
  CCD26511.1   9 KVLIVFGHPERKSFNGSLLDATVKNLESQGLEVKVSDLYRMnWKSEvtedDFPE-----ThekgtrlevapeslaafqnHKLTPDVVAEQEKLEWADLV 102
                 8********************************999999986666455554444.....244456999999999999998888999999********** PP

                 EEEEEECTTCE-HHHHHHHHCHT-..........SSCHCCTT-EE.EEEEE-SSTTTTHH CS
     FMN_red  77 iivtPeYngsysgllKnalDrlsr.........trgkkelrgKpv.alvavgggrrgglr 126
                 i+  P ++ +++++lK   Dr+           + g+ +++gK + ++v++gg +++ ++
  CCD26511.1 103 ILQFPLWWTGFPAILKGWVDRVFSaglayyrpeRFGDGAFAGKKAmLMVSTGGAESHYSA 162
                 **********************889*******9889999996655166699999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      541  (0.0301746); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.43
# Mc/sec: 1826.95
//
Query:       CCD26512.1  [L=1510]
Description: hypothetical protein NDAI_0H03390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-65  221.0   1.2    1.8e-65  221.0   1.2    2.5  2  SNF2_N       SNF2 family N-terminal domain
    3.6e-44  150.4  21.0    3.6e-44  150.4  21.0    5.1  4  DBINO        DNA-binding domain
      4e-17   62.6   5.6    4.9e-17   62.3   0.0    3.6  3  Helicase_C   Helicase conserved C-terminal domain
  ------ inclusion threshold ------
        1.6    8.3  11.4       0.34   10.5   4.8    2.6  2  Fe_hyd_lg_C  Iron only hydrogenase large subunit, C-terminal 


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   3.3      0.39   1.8e+03     220     332 ..      59     176 ..      53     197 .. 0.65
   2 !  221.0   1.2   4.1e-69   1.8e-65      49     349 ..     759    1057 ..     741    1058 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 0.39
                 HHHHHHHHHHH-TTTT--HHHHHH....HTHHHHHHHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH............. CS
                 xxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 220 ledlygLlkfLreepfgekqtfdk....llqrpieaqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalak 314
                 le +y   kfL+ + f+  + +++    ++  p+ +++++  ++++ +  ++ ++r +k v  ++    +e+   kl k+  ++ +  + + +  +  +
  CCD26512.1  59 LETIYQNWKFLNLQEFELINEWNNqskdWFPSPFSSTSPDDLHQINGVEHKVPIKRKNKSVYDEIELIRNEVENYKLYKESNNYLKSGIASTTAATTTT 157
                 555666667888888877666654233388999999999999999999999999999999966666666666677777776666665555555555555 PP

                 .......HHHHHH-HH.H- CS
                 xxxxxxxxxxxxxxxx.xx RF
      SNF2_N 315 llkrseaalksssksk.ek 332
                    +++ +lkss++++ ++
  CCD26512.1 158 AAAKKKSKLKSSKRQQkSQ 176
                 5555555555555444332 PP

  == domain 2  score: 221.0 bits;  conditional E-value: 4.1e-69
                  HHHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH..--------- CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxx RF
      SNF2_N   49 aeakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkk..mkkkntkva 143 
                  a+++ +  +GiLaDemGLGKTvq++++++++ +          k+++ gp+L+v Pas+l++W+nei ++v++ ++  + ++ + +   +k +++  
  CCD26512.1  759 ASLYDQGINGILADEMGLGKTVQSISVLAHLAE----------KHNIWGPYLVVTPASTLHNWVNEITKFVPGFKILPYWGNANDRkvLRKFWDRKN 845 
                  56788999*********************4333..........445679***************************999888877744222233333 PP

                  ------..--EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--H CS
                  xxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  144 pkllad..ydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgek 238 
                   ++ +d  ++v+it+Y+++ +++      + l++++w++++lDE++ +k+s s+  + ++++  +nr++ltGTPiqn++++l++Ll+f++++ f+++
  CCD26512.1  846 LRYTKDspFHVMITSYQMVVSDV------TYLQKMKWQYMILDEAQAIKSSSSSRWKNLLSFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSH 936 
                  3333332268**********999......9*********************9888888889************************************ PP

                  HHHHHHTHHHHH.......HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH- CS
                  xxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  239 qtfdkllqrpie.......aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalksssk 328 
                  + f++++ ++ie       + ++++ +rL+ +l+++mlrr+kk+v+ +l +k+e  ++++l++ ++k+Yn l+++   +  a     s  + ++s +
  CCD26512.1  937 DEFSEWFAKDIEshaesntKLNQQQLRRLHMILKPFMLRRVKKNVQSELGDKIEIDLMCDLTQRQAKLYNILKSQISSNYDAIENAASSPSSSASPD 1033
                  *****************99999************************************************555555544433333332222222222 PP

                  HHH-......HHHHHHHHHHHHH---X CS
                  xxxx......xxxxxxxxxxxxxxxxx RF
      SNF2_N  329 skek......ilelllelrqacnhpql 349 
                     +      + + +++ r++cnhp+l
  CCD26512.1 1034 ---EslsdqnLANAVMQFRKVCNHPDL 1057
                  ...123345699*************98 PP

>> DBINO  DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   5.1      0.41   1.9e+03      26      67 ..     151     192 ..     115     204 .. 0.62
   2 ?   -5.6   5.1         4   1.8e+04      54      91 ..     259     296 ..     247     309 .. 0.36
   3 ?   -3.8   9.4       3.5   1.6e+04      73     110 ..     352     389 ..     344     398 .. 0.84
   4 !  150.4  21.0     8e-48   3.6e-44       2     133 ..     487     618 ..     486     619 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.41
       DBINO  26 qaekkrlanakkvaklcarevrrkasksskatkdlqlrakrl 67 
                 +a+++++a akk +kl + + ++k++k++   k  + +  ++
  CCD26512.1 151 TAATTTTAAAKKKSKLKSSKRQQKSQKQKSLIKKDTKKKSKI 192
                 444455555566666555554444444443333333333344 PP

  == domain 2  score: -5.6 bits;  conditional E-value: 4
       DBINO  54 skatkdlqlrakrlvremllfwkknekeereerkkaek 91 
                 sk++k++     + + e ++     +   r+ +k  +k
  CCD26512.1 259 SKKSKNTKKSLVKKSNEPVTLQSDKDLIVRDLKKMVKK 296
                 22222222222222222222222222223333333333 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 3.5
       DBINO  73 lfwkknekeereerkkaekealekakkeeeereakRqq 110
                  +++k +k  +e++k +eke +ek   e+ ++  + qq
  CCD26512.1 352 FHMRKLKKIFNERKKAKEKEIAEKLAIEKAKKIRNCQQ 389
                 57899999999999999999999999998888777666 PP

  == domain 4  score: 150.4 bits;  conditional E-value: 8e-48
       DBINO   2 eekrkkvwknivkkdipkvyrakaqaekkrlanakkvaklcarevrrkasksskatkdlqlrakrlvremllfwkknekeereerkkaekealekakke 100
                 ++++ ++wk++++kd +k+ r+++q+++ +++n+kk+++l+are ++++ ++ k++kdlq+ra+r  rem ++wkkne+eer+ +kkaek a+e+akke
  CCD26512.1 487 DNTYITIWKDLARKDSAKMLRLIQQIQSIKSMNFKKTSSLVARESKKWQIRNFKQVKDLQTRARRGIREMSNYWKKNEREERDLKKKAEKIAQENAKKE 585
                 678999********************************************************************************************* PP

       DBINO 101 eeereakRqqrkLnFLitQTELYshFiskklkt 133
                 eee+e+ Rq++kLnFL+tQTELYshFi++k+kt
  CCD26512.1 586 EEEKETIRQSKKLNFLLTQTELYSHFIGRKIKT 618
                 *******************************97 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   0.6         4   1.8e+04      29      48 ..     381     403 ..     355     420 .. 0.50
   2 ?    0.8   0.4      0.13     6e+02      13      62 ..     591     637 ..     572     648 .. 0.71
   3 !   62.3   0.0   1.1e-20   4.9e-17       2     111 .]    1346    1458 ..    1345    1458 .. 0.92

  Alignments for each domain:
  == domain 1  score: -4.3 bits;  conditional E-value: 4
                 HHH...HHHHHHHTTSTEEEEST CS
  Helicase_C  29 lek...vklllekkgikvavlhg 48 
                 ++k   ++ ++ek + k+ +  +
  CCD26512.1 381 AKKirnCQQFKEKIKTKIKPSKS 403
                 22222235554444444444444 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.13
                 TTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHH CS
  Helicase_C  13 eeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqf 62 
                 + +++k l f+ t+++l+  + +   ++ik++ l g+++ ++  +++++ 
  CCD26512.1 591 TIRQSKKLNFLLTQTELY--SHFI-GRKIKTTELEGNMTDDQHAAAMTAT 637
                 445566667777777776..5553.336************9999988776 PP

  == domain 3  score: 62.3 bits;  conditional E-value: 1.1e-20
                  HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSS.EEEESGGGTSSSTSTTESEEEESSSS CS
  Helicase_C    2 kleallell.kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqfn.kgesd.vLiatdvaerGidipkvnlVinfdlp 94  
                  kl++l ell +l++e++++li+ + +++++   ++l + ++++ ++l+g+ + ++r++ +++++ k e+  +L++t++++ Gi+++ +++Vi++d +
  CCD26512.1 1346 KLKKLDELLvQLKKEDHRVLIYFQMTKMMDLmEEYL-TYRQYSHIRLDGSSKLEDRRDLVHDWQtKPEIFvFLLSTRAGGLGINLTAADTVIFYDSD 1441
                  88999999889****************998855666.5667**********************97777777************************** PP

                  SSHHHHHHHHTTSSSTT CS
  Helicase_C   95 rnvtsyiqriGRtgRag 111 
                  +n+t   q+++R++R g
  CCD26512.1 1442 WNPTIDSQAMDRAHRLG 1458
                  ***************86 PP

>> Fe_hyd_lg_C  Iron only hydrogenase large subunit, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.5       0.1   4.6e+02     187     225 ..     322     399 ..     232     403 .. 0.62
   2 ?   10.5   4.8   7.6e-05      0.34     129     224 ..     582     690 ..     579     703 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.3 bits;  conditional E-value: 0.1
                  -..........................................TTEEEEEEEE-TSEEEEEEEESHHHHHHHHHHHHTTSS CS
                  x..........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Fe_hyd_lg_C 187 i..........................................egvkeaevelegktlkvavvnGlknikklleklkagea 225
                  i                                          ++ ke+e+    ++l + +++ ++n++++ ek+k++ +
   CCD26512.1 322 IddesdsetefndaetpsppqlimkltlkqfhmrklkkifnerKKAKEKEIA---EKLAIEKAKKIRNCQQFKEKIKTKIK 399
                  0444444444444555556666777777777777787777555555555553...5789999999********99998865 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 7.6e-05
                  SHHHHHTSTT-BBTBBSS-EEEEHHHHHHHHHHTT--GGGS-------TTSSSSSTSS-............TTEEEEE..EEE-TSEEEEEEEESHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxx..xxxxxxxxxxxxxxxxxx RF
  Fe_hyd_lg_C 129 aKklEaareefksagrdvDavlTtrElaellkeagidlakleeeeldnplgessgagki............egvkeae..velegktlkvavvnGlkn 212
                  aKk E ++e++++ ++++++ lT +El + +  ++i+ ++le +++d + + +  a +             e +k+    +++++++ +   ++  +n
   CCD26512.1 582 AKKEEEEKETIRQ-SKKLNFLLTQTELYSHFIGRKIKTTELEGNMTDDQHAAAMTATATtttsnhidlektEAMKNDFhsIDFDNEDDEQLRLKAAQN 678
                  7999998888866.59***************************9999987766666665788888888776333332234555555556677777777 PP

                  HHHHHHHHHTTS CS
                  xxxxxxxxxxxx RF
  Fe_hyd_lg_C 213 ikklleklkage 224
                  + ++l + +a+ 
   CCD26512.1 679 ASNVLAQTRAKA 690
                  777777766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1510 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3083  (0.171956); expected 358.6 (0.02)
Passed bias filter:                      391  (0.0218082); expected 358.6 (0.02)
Passed Vit filter:                        94  (0.0052429); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.47u 0.28s 00:00:01.75 Elapsed: 00:00:00.52
# Mc/sec: 8743.08
//
Query:       CCD26513.1  [L=1105]
Description: hypothetical protein NDAI_0H03400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
          0 1502.8  61.5          0 1502.6  61.5    1.0  1  Med5      Mediator complex subunit Med5


Domain annotation for each model (and alignments):
>> Med5  Mediator complex subunit Med5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1502.6  61.5         0         0       2    1082 .]      11    1100 ..      10    1100 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1502.6 bits;  conditional E-value: 0
        Med5    2 eseslykLvlkCaerrisskeFlnlykelynekfiskiene..deeeesekatevleklssdlvkllnseksllladyvvellfvnynseLvkefLp 96  
                  e++s+ +L++kCa+++i+++eFlnl++e+ynekf+sk+en   d++++s++  e++e+lssd+v+llns++s+l+ady+ +llfvnyn++Lv++ L+
  CCD26513.1   11 EKQSVFDLAIKCADKQIPANEFLNLFNEFYNEKFLSKVENVdeDAQNDSANLGEISEALSSDFVNLLNSGNSFLIADYIAHLLFVNYNTNLVQRSLS 107 
                  789*************************************9445566677778******************************************** PP

        Med5   97 klksvknstvLihllskssaffskltdklvidqlskdlskviipsiLsadvnslanelvvaiakvlqavlklsespiklesvnlreslaiLlsrlsk 193 
                  kl++++n+++Lih++sk+s+ffs+l+dklv dql+kdl+++iipsiLs++++++ + l+v+i+k+lq++l+++++p+ +++ n+r+++++L+srls+
  CCD26513.1  108 KLDLITNTDMLIHFFSKASMFFSSLSDKLVQDQLCKDLPDIIIPSILSMNMKEIPKGLLVSITKLLQVLLRFITTPVPITAPNSRDNSRQLMSRLSH 204 
                  ************************************************************************************************* PP

        Med5  194 inklLekklsqtldsklelkesksvv.lseselervdspsitspqfiasplsttkaplslssaskykdlkllrYyknlwLNnklvnwelvdddfLsk 289 
                  +nklL+kklsqtl+skl +ke +++  ++++ +++ +sps+tspqfi+spls++k+p+s+ss++kykd++llrYykn+wLN k+++we++++dfLsk
  CCD26513.1  205 TNKLLYKKLSQTLESKLVFKELRAPSfVKDNIHDFATSPSLTSPQFISSPLSMMKTPMSTSSGAKYKDMRLLRYYKNIWLNYKILYWEPINSDFLSK 301 
                  *********************998877********************************************************************** PP

        Med5  290 yasIssnlfkesskseknvdalltdLIetsFtcfaqfvsNklYhqensnlnLlerkWviFiikkLPllllenssdnpqvitnALesiddkVvkaiks 386 
                  ya+I+s+lfke ++ ++++d+lltdLIetsFtcfaqfvsNk+Yhq+n+nlnLle++W+iFi+k+LPll+le++s+npq+ ++ALe+iddkV+kaik+
  CCD26513.1  302 YATIASSLFKEPIQPLPSTDHLLTDLIETSFTCFAQFVSNKQYHQTNANLNLLEKRWTIFISKQLPLLMLEHTSKNPQIASKALENIDDKVTKAIKT 398 
                  ************************************************************************************************* PP

        Med5  387 yssekddvknrnedLFDDypstslDiRhdFlkslimlkLqppsvineyLredqmvDvksLpttddlvitnsqgvkelvsdikefiiselesleleai 483 
                  y+s+ dd k++nedLFDDyp+tslDiRhdF+ksl+ml+L pps+in+yLre + +D+k+L+ttddl++tn qg++e+++di++f+ ++++ lele+i
  CCD26513.1  399 YYSQIDDLKSTNEDLFDDYPTTSLDIRHDFIKSLVMLNLSPPSLINDYLRESELIDPKTLTTTDDLLVTNPQGIQENIHDIPTFLLNSINALELEMI 495 
                  ************************************************************************************************* PP

        Med5  484 addsnsss.........ngllqllnnfetiaptkqkeisnaildlleelieeketeklkkicalltfnvshsltviLsfvsPekileklikfiDvsw 571 
                  + + n+++         ng++ql++nf+tiaptkq+++s+ail+ll++++++ +++ ++k+call+fn++hslt+iLsf++P+++le+l++f+D+sw
  CCD26513.1  496 NGNNNDNNntdnissinNGIYQLFMNFDTIAPTKQRQLSEAILSLLNDSVDKGNYTIITKLCALLSFNFNHSLTTILSFTNPQSFLECLMNFVDISW 592 
                  *4444444467888999******************************************************************************** PP

        Med5  572 essveskeedsddddfesqnvylsfglillliiaivktydisledvalksseldiknsfiiklisklseIpdafvldesneeddelqeksnkllqsW 668 
                  ++ ++ k+ed++d+ + s+n++lsf+++lllii+i++tyd++l++val+s++l++ nsf+i+++skls++pda++ld+s++ ++el ++s kl+q+W
  CCD26513.1  593 KDPTTVKSEDNEDSGYASNNISLSFSWSLLLIITISQTYDVKLTKVALTSPSLSTVNSFSINFLSKLSTLPDAYILDDSKSLSPELLTQSYKLVQRW 689 
                  ************************************************************************************************* PP

        Med5  669 lrdLFvngslSdeliksvdvkqlakLiPfifkQvllavelgvisdisnlvgGfeYllqpfLlvglikivtWLeqyLselkndktaeellekilklLn 765 
                  + dLFvngs+Sd+l ++++++qla+L+Pfi+kQvlla+elg+i+d sn+ gGfeY+lqpf+++glik+v+WLeqyL  lk+ ++++el+++i+ lLn
  CCD26513.1  690 MYDLFVNGSISDNLSQTTEPRQLATLLPFILKQVLLAIELGAINDNSNILGGFEYFLQPFMMIGLIKTVYWLEQYLAVLKTGTYSDELIQNIFVLLN 786 
                  ************************************************************************************************* PP

        Med5  766 sllnpsslnedskafhsavLrlnavsLlkvlrkfrvresqsnYgiYssesqgdpkleslIskLvsvlnispiydvdsrvisseenaysq.kelsyek 861 
                  s++np +lneds++fh+avLrlnav+Llkvlrkfrv ++qsnY++Yss + g p+leslI+kLvsvlnispiy++d+r++ss en+ysq k+l+y+k
  CCD26513.1  787 SIFNPGTLNEDSRSFHNAVLRLNAVPLLKVLRKFRV-QTQSNYNVYSSANGGYPALESLIRKLVSVLNISPIYNTDPRIVSS-ENMYSQqKPLGYGK 881 
                  ************************************.9********************************************.************** PP

        Med5  862 llitnenplnkiltnqinsfWnlhsstyYnldyLkeliklvtpkkfLedvlrtLkykvtsygvpgsrnkqsneesehvldylfyflvlsdvesqeea 958 
                  lli++enp+nki+tnqinsfWnlhsstyYnldyL eli+l++p+kf++dvl+tL yk ++ygvp +rnk+s++esehvldy+fyflvl+dve+q ea
  CCD26513.1  882 LLILDENPINKIMTNQINSFWNLHSSTYYNLDYLSELINLISPEKFFTDVLQTLIYKSKTYGVPVARNKMSTKESEHVLDYCFYFLVLHDVETQIEA 978 
                  ************************************************************************************************* PP

        Med5  959 sellelledtsesskseakpkkeevklk.....ekleqkqenvsdddfdmLfgenetslqandeelassievl.ekvkksnkilalkrdsfgvilhe 1049
                  ++l +l+   +e+++ + +p k+e+ +k     +k+e++q    dddfdmLfgen+ts+++++e+   +i ++ + v++ n i++lk+dsf++++he
  CCD26513.1  979 VRLSQLMA--EENQQVDGRPLKKETVAKketiiPKAETTQ----DDDFDMLFGENDTSTHDPEED--LQIITIeHAVNEFNDIATLKNDSFAILIHE 1067
                  ********..666666667777776666578888888888....*********************..68999977********************** PP

        Med5 1050 mkldadealeegdiskeeyeklnklhdkylstl 1082
                  mk+++++a++eg +s+eeyek++k+h+kyls+l
  CCD26513.1 1068 MKVSRERAFKEGAVSREEYEKVCKYHKKYLSML 1100
                  ******************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1105 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.30s 00:00:01.03 Elapsed: 00:00:00.46
# Mc/sec: 7294.78
//
Query:       CCD26514.1  [L=373]
Description: hypothetical protein NDAI_0H03410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.3e-28   99.3   2.0    3.3e-28   99.3   2.0    3.3  2  Pex14_N          Peroxisomal membrane anchor protein (Pex14p)
  ------ inclusion threshold ------
       0.01   15.8   1.4       0.02   14.9   1.4    1.5  1  DUF892           Domain of unknown function (DUF892)
      0.062   13.3   9.2        1.3    9.0   9.1    2.7  2  DUF1043          Protein of unknown function (DUF1043)
      0.066   12.9  12.3       0.13   11.9  12.3    1.4  1  SHE3             SWI5-dependent HO expression protein 3
      0.088   12.8   0.8       0.27   11.2   0.5    2.0  2  LURAP            Leucine rich adaptor protein
       0.11   12.6   7.2        0.3   11.1   7.0    1.8  1  Baculo_PEP_C     Baculovirus polyhedron envelope protein, PEP
       0.15   11.4   3.7       0.24   10.7   3.7    1.2  1  DUF4407          Domain of unknown function (DUF4407)
       0.16   11.4  12.4       0.27   10.7  12.4    1.3  1  Golgin_A5        Golgin subfamily A member 5
       0.18   10.7  11.1       0.29   10.0  11.1    1.3  1  Spc7             Spc7 kinetochore protein
       0.18   12.2   9.2        1.9    8.9   0.7    2.9  2  CCDC-167         Coiled-coil domain-containing protein 167
       0.18   10.7   0.8       0.22   10.4   0.8    1.2  1  LMBR1            LMBR1-like membrane protein
       0.23   11.4  17.8       0.14   12.1   5.9    3.5  3  Prefoldin_2      Prefoldin subunit
       0.24   12.0   2.6        1.1    9.9   0.3    2.6  2  GTP-bdg_M        GTP-binding GTPase Middle Region
       0.27    9.1   4.9       0.35    8.7   4.9    1.1  1  V_ATPase_I       V-type ATPase 116kDa subunit family
       0.39   10.8   7.2        2.8    8.0   7.2    2.3  1  DUF1664          Protein of unknown function (DUF1664)
       0.41   11.1  16.7       0.71   10.3  13.4    2.4  2  DUF4200          Domain of unknown function (DUF4200)
       0.48   10.2   8.3        1.5    8.7   2.6    2.5  2  Nsp1_C           Nsp1-like C-terminal region
       0.69    7.6   9.9       0.94    7.2   9.9    1.1  1  Nup88            Nuclear pore component
       0.73   10.1  15.2        1.3    9.3  15.2    1.5  1  zf-C4H2          Zinc finger-containing protein
       0.95    9.7  12.1        1.4    9.2   5.1    3.0  2  DUF5082          Domain of unknown function (DUF5082)
        1.3    8.9  13.7       0.83    9.5   3.5    3.1  3  CdvA             CdvA-like coiled-coil domain
        1.4    9.6   6.7       0.48   11.1   1.3    2.8  3  SlyX             SlyX
        1.9    7.3   6.3        5.4    5.7   6.3    1.8  1  ALMT             Aluminium activated malate transporter
        2.4    8.5   9.3    1.1e+02    3.2   9.4    2.5  1  Rx_N             Rx N-terminal domain
          3    8.2  13.4        3.1    8.2  11.2    2.1  2  Tup_N            Tup N-terminal
        3.1    8.5  10.9        1.3    9.7   7.1    2.2  2  HIP1_clath_bdg   Clathrin-binding domain of Huntingtin-intera
        3.8    8.4   6.5         14    6.6   0.0    2.7  2  DUF5339          Family of unknown function (DUF5339)
          4    7.8   6.9        1.9    8.8   2.0    2.2  2  DUF948           Bacterial protein of unknown function (DUF94
        4.2    7.3  15.5        3.9    7.4   6.4    2.4  2  Ax_dynein_light  Axonemal dynein light chain
        5.1    6.3   9.7        2.8    7.1   5.6    1.9  2  TMPIT            TMPIT-like protein


Domain annotation for each model (and alignments):
>> Pex14_N  Peroxisomal membrane anchor protein (Pex14p) conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   2.0   5.5e-31   3.3e-28       1     157 []      13     133 ..      13     133 .. 0.72
   2 ?   -2.1   1.6       9.2   5.5e+03      80      80 ..     304     304 ..     215     367 .. 0.59

  Alignments for each domain:
  == domain 1  score: 99.3 bits;  conditional E-value: 5.5e-31
     Pex14_N   1 RedlveqAvkFLqdpsVrsaplekkvaFLesKGLtqeEIeeaLkraereeeasesavaassaseqaqeesasssatpqpqaasqtsqsspspsppaqqq 99 
                 R dl ++Av+FL+d+sV++apl kk++FL+ KGL+++EIe aL++++ +++       + + s           +     + +++ ++ +        +
  CCD26514.1  13 RRDLYSSAVSFLKDSSVKDAPLSKKIEFLQNKGLNNDEIELALRDSR-DSN-------GIPLS---------VGNDIGRRKRNENDDEGN--------S 86 
                 778999***************************************22.221.......22221.........111111111111111111........1 PP

     Pex14_N 100 qqqyrpPivtypefltkppkppppPlrtwrdllitatalaglgaglyglskryiaPmi 157
                 +++y     +y       + ppp P+r+w+d++++ata+ag+++g+y l++ry+ P i
  CCD26514.1  87 SSSY-----YY------EAIPPPIPRRDWKDYFVMATATAGIAYGVYELTRRYVLPNI 133
                 1222.....35......46678**********************************86 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 9.2
     Pex14_N  80 q 80 
                 q
  CCD26514.1 304 Q 304
                 0 PP

>> DUF892  Domain of unknown function (DUF892)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.9   1.4   3.4e-05      0.02      34      85 ..     135     185 ..     132     224 .. 0.92

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 3.4e-05
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------.-HHHHTTT------- CS
      DUF892  34 peLkaaleqHleeTegqierLeqvferlgesasekkcdamegliaegqelie 85 
                 pe k+ leq+ ee+++q +r+++v++++++++ e+k +  e  ++e +++i 
  CCD26514.1 135 PESKTKLEQDKEEIKNQFNRVDKVLNAIEQEQAEFK-EHEEAKMNELDDVIR 185
                 78899******************************9.998888998888776 PP

>> DUF1043  Protein of unknown function (DUF1043)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   9.1    0.0022       1.3      31      80 ..     132     208 ..     112     305 .. 0.80
   2 ?   -1.0   0.0       2.9   1.7e+03      54      74 ..     282     304 ..     276     325 .. 0.71

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.0022
     DUF1043  31 kelekakaeleeqkqeledHfaqsaelLetlaedyqkLyqhlaksseeL...........................l 80 
                 + l ++k++le+ k+e+++ f++  ++L+ ++++  + ++h + + +eL                           l
  CCD26514.1 132 NILPESKTKLEQDKEEIKNQFNRVDKVLNAIEQEQAEFKEHEEAKMNELddvirdlnmtvdrttemrtkmedefrmL 208
                 667899*******************************************7777776666555555444444444442 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 2.9
     DUF1043  54 saelLetla..edyqkLyqhlak 74 
                 +aelL++++  +dy    +h+++
  CCD26514.1 282 TAELLAKMNfpNDYLPTSNHIQQ 304
                 66777666544566555666655 PP

>> SHE3  SWI5-dependent HO expression protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  12.3   0.00022      0.13      70     187 ..     140     255 ..     135     261 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00022
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSXXXXXXXXXXX.XXX CS
        SHE3  70 dlekelselkesveelklekkqlkkrlenssaseteleeelerlkvqYdalvdsqkeYkehYqqeieeLkesleklklenekqleelqerissndkdid 168
                  le++ +e k++++ + +  ++++++  + +++e++ ++el+ +  + +  vd   e + + ++e   Lk ++ +l++  +k+++++ ++ + +  +i+
  CCD26514.1 140 KLEQDKEEIKNQFNRVDKVLNAIEQEQAEFKEHEEAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIKDNGNSSQVD--QIN 236
                 4899999999999999999999999999999999999999999999999999999999999999999999999999999998888887754444..589 PP

                 XXXXXXXXXXXXXXXXXXX CS
        SHE3 169 tkldsynnkkknlesieee 187
                 t+++s++n  +n  ++ +e
  CCD26514.1 237 TEIESLKNLIRNSSNLPQE 255
                 9999988887777666665 PP

>> LURAP  Leucine rich adaptor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       4.2   2.5e+03       8      27 ..     171     190 ..     163     198 .. 0.78
   2 ?   11.2   0.5   0.00044      0.27      13      64 ..     197     254 ..     185     272 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 4.2
       LURAP   8 rskeselkrleeklrklkle 27 
                 +++e+++++l++ +r+l + 
  CCD26514.1 171 EHEEAKMNELDDVIRDLNMT 190
                 45788899999999999875 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00044
       LURAP  13 elkrleeklrklklelanlraidvkllq......qllainegieavkWlleekgtlts 64 
                   +++e+ +r+lkle++nl+ +  k ++      q+ +in  ie++k l+ + ++l  
  CCD26514.1 197 MRTKMEDEFRMLKLEMSNLQNTIDKFIKdngnssQVDQINTEIESLKNLIRNSSNLPQ 254
                 456899*************9766666643444449999************99998865 PP

>> Baculo_PEP_C  Baculovirus polyhedron envelope protein, PEP, C terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   7.0   0.00051       0.3      34     128 ..     139     240 ..     120     252 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00051
  Baculo_PEP_C  34 aqlatlldaietqLnalsedlksl...laeldtrldtlltnLtdalnalq...dtlrneLtnlnsiltnLlssvtNinstLnnllqalnnl.dlgal 123
                   ++l++++++i++q+n +++ l++     ae++++ ++ +++L+d +  l+   d  ++  t ++ +   L  ++ N+++t+   +++  n  + +++
    CCD26514.1 139 TKLEQDKEEIKNQFNRVDKVLNAIeqeQAEFKEHEEAKMNELDDVIRDLNmtvDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIKDNGNSsQVDQI 235
                   5788889999988888776555540004555558888999999999999977666666668899999999999999999999999876665355555 PP

  Baculo_PEP_C 124 sqele 128
                   ++e e
    CCD26514.1 236 NTEIE 240
                   55555 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.7   0.00039      0.24     121     231 ..     142     251 ..     131     267 .. 0.69

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00039
     DUF4407 121 kelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtkgtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalrael 219
                 ++ ke+++++  +++++  + i++ qae+++ e++  ++ +++ + l+ t   +t+ +   +++++  k ++  +q++++++ ++  +++++++ ++e+
  CCD26514.1 142 EQDKEEIKNQ-FNRVDKVLNAIEQEQAEFKEHEEAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIKDNGNSSQVDQINTEI 239
                 2222333333.35666666666666666666666666666666666666665566677888999******************99999************ PP

     DUF4407 220 aeleaerakera 231
                 ++l++ ++++ +
  CCD26514.1 240 ESLKNLIRNSSN 251
                 **9988776654 PP

>> Golgin_A5  Golgin subfamily A member 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7  12.4   0.00044      0.27      51     160 ..     140     251 ..     130     259 .. 0.87

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00044
   Golgin_A5  51 elkqerdllreelqklnqqieqlrtelqdleaqqqaeaeslreqlqeleeqleeerkakeeveaelerlkeelryleeelvr..skatlqsrikdreke 147
                 +l+q+++ ++++ +++ + ++ + +e ++ +++++a +++l + +++l+ +++  ++ + ++e+e + lk e++ l++   +  + + + s++ + ++e
  CCD26514.1 140 KLEQDKEEIKNQFNRVDKVLNAIEQEQAEFKEHEEAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKfiKDNGNSSQVDQINTE 238
                 5678888999999999999999999999999999999999999*******************************99997766325677899999***** PP

   Golgin_A5 148 ieklrnqlttksl 160
                 ie+l+n + ++s+
  CCD26514.1 239 IESLKNLIRNSSN 251
                 ******9999876 PP

>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  11.1   0.00049      0.29     158     263 ..     134     239 ..     130     259 .. 0.71

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00049
        Spc7 158 LekqeeeldellpeleeekaeleeeleklqeaaeelesidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaerv 256
                 L +++ +l++ ++e++++++++ + l+ ++++++e+++ ++++++el + +++l+ ++++  ++ ++++++   l+ ++++l++ ++++ ++  ++ +v
  CCD26514.1 134 LPESKTKLEQDKEEIKNQFNRVDKVLNAIEQEQAEFKEHEEAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIKDNGNSSQV 232
                 556666777777777777777777777777777777777788888888888888888887777888888888777777777777777777777666666 PP

        Spc7 257 leeckgw 263
                  + + ++
  CCD26514.1 233 DQINTEI 239
                 6655444 PP

>> CCDC-167  Coiled-coil domain-containing protein 167
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.7    0.0031       1.9      23      64 ..     124     165 ..     117     168 .. 0.88
   2 ?    5.9   2.8     0.027        16      19      67 ..     179     228 ..     161     235 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0031
    CCDC-167  23 verrlrkeelseeeResleeEeaslkeqleenekeLksLrke 64 
                 + rr+   ++ +e +++le+ ++++k+q ++ +k L+ + +e
  CCD26514.1 124 LTRRYVLPNILPESKTKLEQDKEEIKNQFNRVDKVLNAIEQE 165
                 56788889999*************************988777 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.027
    CCDC-167  19 rLeaverrlr.keelseeeResleeEeaslkeqleenekeLksLrkeNrk 67 
                 +L++v r l+ ++  ++e R+++e+E ++lk ++++ ++   +  k N+ 
  CCD26514.1 179 ELDDVIRDLNmTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIKDNGN 228
                 3444444443134456777********************99998888875 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.8   0.00037      0.22     211     323 ..     140     261 ..      65     285 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00037
       LMBR1 211 klntekeeae...reledllkevkklrksisesdp.lrkyleeilkkvPeeiaeklks.nenkteeslakle....kqlikalqkrertekqwkrllek 300
                 kl+++kee +   ++++++l+++++ + +++e ++   + l+++++  + ++  +++  ++++ e ++ kle    +++i +  k + ++ q +++ ++
  CCD26514.1 140 KLEQDKEEIKnqfNRVDKVLNAIEQEQAEFKEHEEaKMNELDDVIRDLNMTVDRTTEMrTKMEDEFRMLKLEmsnlQNTIDKFIKDNGNSSQVDQINTE 238
                 333333333311145556666666666666666664446677777766665555544465555666666666655678888899999999999999999 PP

       LMBR1 301 alelediiknksskekefksses 323
                 +  l+++i+n+s+  +e++ s s
  CCD26514.1 239 IESLKNLIRNSSNLPQELNASPS 261
                 99999999999999999987744 PP

>> Prefoldin_2  Prefoldin subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   5.9   0.00024      0.14      58     103 ..     132     177 ..     120     179 .. 0.87
   2 ?    3.3   0.3      0.13        76      60     104 ..     180     224 ..     177     226 .. 0.74
   3 ?    3.3   0.2      0.13        76      12      40 ..     230     258 ..     226     262 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00024
                  E-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT CS
  Prefoldin_2  58 qdkeevkeeLeerketlekeiktlekqleklekeleelkeelqkkl 103
                  + ++e k++Le++ke+++ + +++ k l  +e+e +e+ke+  +k+
   CCD26514.1 132 NILPESKTKLEQDKEEIKNQFNRVDKVLNAIEQEQAEFKEHEEAKM 177
                  567899**********************************988776 PP

  == domain 2  score: 3.3 bits;  conditional E-value: 0.13
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTS CS
  Prefoldin_2  60 keevkeeLeerketlekeiktlekqleklekeleelkeelqkklq 104
                  +++v+ +L+ + ++ ++  +++e++ + l+ e+++l++++ k ++
   CCD26514.1 180 LDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIK 224
                  677788888888888888888888888888888888888776555 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.13
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  Prefoldin_2  12 qqlqqlaqqikqletqlkelelvleelel 40 
                  +q++q+ ++i++l++ ++++    +el+ 
   CCD26514.1 230 SQVDQINTEIESLKNLIRNSSNLPQELNA 258
                  68999999999999999999999888875 PP

>> GTP-bdg_M  GTP-binding GTPase Middle Region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3    0.0018       1.1      43      74 ..     137     168 ..     122     172 .. 0.91
   2 ?    1.0   0.1       1.1   6.4e+02      45      70 ..     199     224 ..     192     232 .. 0.87

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.0018
                 XXXXXHHHHHHHHHHHHHHHHHHHHHHHHHH. CS
   GTP-bdg_M  43 GetkleldrrlireriaklkkeLekvkkkrel 74 
                  +tkle d+ +i+++ +++ k L+++++++++
  CCD26514.1 137 SKTKLEQDKEEIKNQFNRVDKVLNAIEQEQAE 168
                 689************************98875 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 1.1
                 XXXHHHHHHHHHHHHHHHHHHHHHHH CS
   GTP-bdg_M  45 tkleldrrlireriaklkkeLekvkk 70 
                 tk+e + r+++  +++l++ ++k  k
  CCD26514.1 199 TKMEDEFRMLKLEMSNLQNTIDKFIK 224
                 89999**************9998766 PP

>> V_ATPase_I  V-type ATPase 116kDa subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.9   0.00059      0.35      36     139 ..     142     247 ..     134     296 .. 0.76

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00059
  V_ATPase_I  36 erklrfleeeieklekavikeeeaeesleapeekeldeleeelekleeelkelnenleklkkelnel.velkavlekakefleee.eeeeeeeeseeee 132
                 e+  + ++++ ++ +k+    e+++++ +++ee++++el++ +++l+  + +++e  +k+++e++ l +e++++ +++++f++++ ++++ ++ ++e e
  CCD26514.1 142 EQDKEEIKNQFNRVDKVLNAIEQEQAEFKEHEEAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLkLEMSNLQNTIDKFIKDNgNSSQVDQINTEIE 240
                 555566788888888888888888899999999999999999999999999999999999999988735888888889999988855555554444444 PP

  V_ATPase_I 133 eekeeee 139
                 + k+  +
  CCD26514.1 241 SLKNLIR 247
                 3333333 PP

>> DUF1664  Protein of unknown function (DUF1664)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   7.2    0.0046       2.8       9     119 ..     111     221 ..     104     257 .. 0.66

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.0046
     DUF1664   9 paavvgavgYgyvwwkGwklsdlmfvTkrslsdavesvskqleqvseslaatkrhLssridrvdkkldeqkeiskeikeevtevredlseigedvesvk 107
                 ++a++g +  +y   +   l++++   k  l++  e++ +q ++v + l+a  ++ ++  ++ ++k++e  +++++++  v++  e  ++++++++ +k
  CCD26514.1 111 ATATAGIAYGVYELTRRYVLPNILPESKTKLEQDKEEIKNQFNRVDKVLNAIEQEQAEFKEHEEAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLK 209
                 444444433345555666666666666777777777777666666666666555555555566666666666666666666666666666666666666 PP

     DUF1664 108 eavegleskler 119
                   +++l++++++
  CCD26514.1 210 LEMSNLQNTIDK 221
                 666666666554 PP

>> DUF4200  Domain of unknown function (DUF4200)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  13.4    0.0012      0.71      31     107 ..     136     209 ..     130     221 .. 0.81
   2 ?    1.4   0.2      0.69   4.2e+02      50      72 ..     219     241 ..     207     256 .. 0.67

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.0012
     DUF4200  31 qreeelekkeqeleedllkfdkflkendakraralkkaeeerklkkekeaeikklkaeietlkseiekleekleeyk 107
                 + + +le+ ++e++++++++dk l+ +++++  a+ k +ee+k++ e +  i++l+  +++  + ++k+e++ + +k
  CCD26514.1 136 ESKTKLEQDKEEIKNQFNRVDKVLNAIEQEQ--AEFKEHEEAKMN-ELDDVIRDLNMTVDRTTEMRTKMEDEFRMLK 209
                 5678999999999999999999998888765..666777777765.7899999999999999999999999987666 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.69
     DUF4200  50 fdkflkendakraralkkaeeer 72 
                  dkf+k+n + ++  + ++e+e+
  CCD26514.1 219 IDKFIKDNGNSSQVDQINTEIES 241
                 57777777776665555555554 PP

>> Nsp1_C  Nsp1-like C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.6    0.0025       1.5      60      92 ..     139     171 ..     136     179 .. 0.91
   2 ?    4.1   0.4     0.062        37      57      99 ..     182     224 ..     175     244 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.0025
      Nsp1_C  60 skLysevleaeqeqnkidqeLeyiesqqdeLes 92 
                 +kL ++ +e++++ n++d+ L+ ie++q e ++
  CCD26514.1 139 TKLEQDKEEIKNQFNRVDKVLNAIEQEQAEFKE 171
                 6899************************99865 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.062
      Nsp1_C  57 ekIskLysevleaeqeqnkidqeLeyiesqqdeLeslLdnyEk 99 
                 + I++L+  v ++ ++ +k+++e  +++ + ++L++ +d++ k
  CCD26514.1 182 DVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIK 224
                 67999*******************************9998755 PP

>> Nup88  Nuclear pore component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   9.9    0.0016      0.94     561     664 ..     132     237 ..     122     257 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0016
       Nup88 561 kllkkqkeqqleelqsleeerkslseraeklAekyeeikdkQeklvrrvkkvlkrlnsklpvlseaeremkkelekikeklkslknalkqvkkk..ldk 657
                 ++l + k++ +++ ++++++ + +    + + ++  e k++ e+ ++ +++v+++ln  +  ++e+  +m+ e++ +k ++++l+n++++  k    + 
  CCD26514.1 132 NILPESKTKLEQDKEEIKNQFNRVDKVLNAIEQEQAEFKEHEEAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIKDngNSS 230
                 567788888899999999998888888888889999999999999999999999999999999999999999999999999999999998754411233 PP

       Nup88 658 qrkqiak 664
                 q +qi+ 
  CCD26514.1 231 QVDQINT 237
                 4444443 PP

>> zf-C4H2  Zinc finger-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  15.2    0.0021       1.3      10     131 ..     139     279 ..     132     366 .. 0.62

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0021
     zf-C4H2  10 leleklknklakevealekeekcleeykkelelLeqEkmaHveeLrlIhaDinalEsvikeaeeekekslekakklyeeykklkeevnelrselglekl 108
                 ++le+ k++++++++ +   +k+l+ +++e  + ++  +a ++eL  +   i +l  ++ ++ e ++k++++ ++l  e+++l++++++  +++g ++ 
  CCD26514.1 139 TKLEQDKEEIKNQFNRV---DKVLNAIEQEQAEFKEHEEAKMNELDDV---IRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIKDNGNSSQ 231
                 33444444444443333...3344444444444444444444555555...56666799**********************************998877 PP

     zf-C4H2 109 edleeeeeellkeeifekqklk.........................a 131
                  d+ ++e e lk+ i ++++l                           
  CCD26514.1 232 VDQINTEIESLKNLIRNSSNLPqelnaspslgdnkkspstgipgmdaI 279
                 777777777777777333333334443333333333333333333330 PP

>> DUF5082  Domain of unknown function (DUF5082)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   5.1    0.0023       1.4      30     113 ..     135     221 ..     132     225 .. 0.78
   2 ?    3.8   0.2      0.11        68      90     109 ..     232     251 ..     227     259 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.0023
     DUF5082  30 keaktklsdekeslkqkkkklekplnsse....sWkGkeennydgirsnlessyqtyvdkldelidaieeEIerLenqiseaqgvldt 113
                  e ktkl++ ke++k++ + + k ln  e    +  +++e+   +++ ++  + +  vd++ e+  ++e+E + L+ ++s++q+ +d+
  CCD26514.1 135 PESKTKLEQDKEEIKNQFNRVDKVLNAIEqeqaEF-KEHEEAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDK 221
                 57799999999999999988888888775333222.223333344445999999*******************************986 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.11
     DUF5082  90 idaieeEIerLenqiseaqg 109
                 +d+i++EIe L+n i ++++
  CCD26514.1 232 VDQINTEIESLKNLIRNSSN 251
                 68999999999999988765 PP

>> CdvA  CdvA-like coiled-coil domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   2.2      0.17     1e+02      84     114 ..     138     168 ..     132     177 .. 0.52
   2 ?    9.5   3.5    0.0014      0.83       3      51 ..     177     225 ..     175     243 .. 0.89
   3 ?    0.1   0.1       1.1   6.7e+02      90     111 ..     231     252 ..     223     261 .. 0.59

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.17
        CdvA  84 ieairellesaleekeeikklleklsklele 114
                 ++++++ +e ++++ + ++k+l+ +++ ++e
  CCD26514.1 138 KTKLEQDKEEIKNQFNRVDKVLNAIEQEQAE 168
                 3444455555555555555555555554444 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0014
        CdvA   3 kkALeeLvsegdipkstyeeikekleealkklkekakelkeklkkrlke 51 
                 ++ L++++++ ++  +++ e++ k+e++++ lk ++++l+++++k +k+
  CCD26514.1 177 MNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIKD 225
                 5679***************************************998775 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 1.1
        CdvA  90 llesaleekeeikklleklskl 111
                 + ++++ e+e++k+l+++ s+l
  CCD26514.1 231 QVDQINTEIESLKNLIRNSSNL 252
                 4455566666666666555554 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.2       3.8   2.3e+03      29      59 ..     141     171 ..     135     175 .. 0.67
   2 ?   11.1   1.3    0.0008      0.48       9      53 ..     174     218 ..     171     226 .. 0.92
   3 ?   -0.8   0.0       4.1   2.4e+03      32      50 ..     231     249 ..     228     269 .. 0.52

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 3.8
                 HHHHHHHHHHHHHHHHHT-XXXXXXXXXXXX CS
        SlyX  29 qqqqidrlqrqlrllaerlkeleessgasea 59 
                  +q+ ++++ q++++ + l+++e+++++ ++
  CCD26514.1 141 LEQDKEEIKNQFNRVDKVLNAIEQEQAEFKE 171
                 4566677777888888878877777765544 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.0008
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXX CS
        SlyX   9 EiklafqedtieeLndvvaeqqqqidrlqrqlrllaerlkelees 53 
                 E k+  ++d+i +Ln +v +  +  ++++ ++r+l+ ++++l+++
  CCD26514.1 174 EAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNT 218
                 7889999*****************************999999875 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 4.1
                 HHHHHHHHHHHHHHT-XXX CS
        SlyX  32 qidrlqrqlrllaerlkel 50 
                 q+d++ ++++ l++ +++ 
  CCD26514.1 231 QVDQINTEIESLKNLIRNS 249
                 4555555555555555332 PP

>> ALMT  Aluminium activated malate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   6.3     0.009       5.4     256     387 ..     103     238 ..     100     347 .. 0.58

  Alignments for each domain:
  == domain 1  score: 5.7 bits;  conditional E-value: 0.009
        ALMT 256 pwkqyvkvggvlrqcaytveal.hgcilseiqapeelr.kkfkeelqrvslesakvlrelaesvkkmkklskveellkevkvaaeeLqskldskskLlv 352
                 +wk y  +++++  +ay v  l   ++l +i   ++ + ++ kee+++  + + kvl+ ++++  + k+ ++    ++e+   + +L++++d   ++ +
  CCD26514.1 103 DWKDYFVMATATAGIAYGVYELtRRYVLPNILPESKTKlEQDKEEIKNQFNRVDKVLNAIEQEQAEFKEHEE--AKMNELDDVIRDLNMTVDRTTEMRT 199
                 577777777777777777777743455555544333331233455555555566666666666666665555..4666666667777777776666555 PP

        ALMT 353 nsekweaakkkekaeeveekkeeekeseskkeea.....e 387
                 + e +     k + ++ +++  +  +++ ++++      e
  CCD26514.1 200 KMEDE-FRMLKLEMSNLQNTIDKFIKDNGNSSQVdqintE 238
                 55542.2222222222222222211111111111011111 PP

>> Rx_N  Rx N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   9.4      0.18   1.1e+02      19      75 ..     137     194 ..     124     248 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.18
        Rx_N  19 llkgvkeeleklkdeLesiqavLedaeerqik.deavkeWlkelrdlaydaeDvlDef 75 
                 +  +++++ e++k+++++++ vL+  e+ q +  e+ ++ ++el d++ d+   +D+ 
  CCD26514.1 137 SKTKLEQDKEEIKNQFNRVDKVLNAIEQEQAEfKEHEEAKMNELDDVIRDLNMTVDRT 194
                 5678999*********************999625666788999999999998888865 PP

>> Tup_N  Tup N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2  11.2    0.0052       3.1       7      75 ..     146     214 ..     140     216 .. 0.90
   2 ?   -1.2   0.0       4.5   2.7e+03       7      20 ..     233     246 ..     226     258 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0052
       Tup_N   7 davkqEfdalsqeasslkaqkdeyelkiqsqiqElqqirqtlyeLeeahrkikqqYEeeiarLkaeLes 75 
                 + +k+ f+ + + ++ +++++ e+  + +++++El+ + + l     + ++++++ E+e + Lk e+ +
  CCD26514.1 146 EEIKNQFNRVDKVLNAIEQEQAEFKEHEEAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSN 214
                 679********************************9887777777777899**************9976 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 4.5
       Tup_N   7 davkqEfdalsqea 20 
                 d++ +E+++l++ +
  CCD26514.1 233 DQINTEIESLKNLI 246
                 44555555554444 PP

>> HIP1_clath_bdg  Clathrin-binding domain of Huntingtin-interacting protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   8.4     0.084        50      22      98 ..     138     214 ..     134     215 .. 0.84
   2 ?    9.7   7.1    0.0021       1.3      12      99 .]     156     242 ..     153     244 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.084
  HIP1_clath_bdg  22 qeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLqaEkes 98 
                     +  +e+ k+e++++++r+ +  +  ++eq+e  e+ ++ +++  + +  l+ +++++++  ++++ +   L+ E ++
      CCD26514.1 138 KTKLEQDKEEIKNQFNRVDKVLNAIEQEQAEFKEHEEAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSN 214
                     56789999999999999999999999999998888888888888888889999999999999999999888888765 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.0021
  HIP1_clath_bdg  12 tkqlsvarqaqeeverekkeleeelerlkeeaerkleeqkeelekLkreleakraelarlkssLesseqsgeqlssqlaaLqaEkesL 99 
                      k l +  q+q e +   +   +el+++ ++ ++ ++  +e   k++ e+ + + e+++l++++++  +  +  ssq++++++E esL
      CCD26514.1 156 DKVLNAIEQEQAEFKEHEEAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIKD-NGNSSQVDQINTEIESL 242
                     58899999********************************************************976654.45577888888887765 PP

>> DUF5339  Family of unknown function (DUF5339)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   2.7      0.37   2.2e+02      23      52 ..     139     168 ..     134     185 .. 0.78
   2 ?    6.6   0.0     0.024        14      10      47 ..     217     250 ..     212     257 .. 0.75

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.37
     DUF5339  23 pgtktqadaikkqleqsKkqilalpkeqQe 52 
                  + ++++++ik+q++   k + a+++eq e
  CCD26514.1 139 TKLEQDKEEIKNQFNRVDKVLNAIEQEQAE 168
                 456788999999999999999999998876 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.024
     DUF5339  10 kevdkliakaekqpgtktqadaikkqleqsKkqilalp 47 
                 + +dk+i++    +g   q+d+i +++e+ K  i    
  CCD26514.1 217 NTIDKFIKD----NGNSSQVDQINTEIESLKNLIRNSS 250
                 345555555....59****************9987655 PP

>> DUF948  Bacterial protein of unknown function (DUF948)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2      0.82   4.9e+02      54      79 ..     142     164 ..     130     174 .. 0.71
   2 ?    8.8   2.0    0.0032       1.9      20      87 ..     183     252 ..     180     256 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.82
      DUF948  54 akvnelledvneklekvdplteavad 79 
                 ++ +   e+++++ ++vd++ +a+++
  CCD26514.1 142 EQDK---EEIKNQFNRVDKVLNAIEQ 164
                 4433...4888999999999988876 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.0032
      DUF948  20 vllklkktldeaaatieelekqvdpilkevedllakvnelledvne..klekvdplteavadlgesvsel 87 
                 v++ l+ t+d+++++ +++e++ + +  e+ +l +++ +  +d  +  +++++++ +e++++l ++ s+l
  CCD26514.1 183 VIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIKDNGNssQVDQINTEIESLKNLIRNSSNL 252
                 678999*********************************8777544448888888888888887777766 PP

>> Ax_dynein_light  Axonemal dynein light chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.4    0.0066       3.9     127     170 ..     137     180 ..     113     194 .. 0.83
   2 ?    5.2   1.7     0.031        18     122     186 ..     195     257 ..     184     258 .. 0.78

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0066
  Ax_dynein_light 127 kikeLeeekeelekqvaelkaklealekrekerrqeeekkheee 170
                        ++Le++kee+++q + +++ l+a+e++++e +++ee k +e 
       CCD26514.1 137 SKTKLEQDKEEIKNQFNRVDKVLNAIEQEQAEFKEHEEAKMNEL 180
                      4589****************************999999998875 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.031
  Ax_dynein_light 122 selekkikeLeeekeelekqvaelkaklealekrekerrqeeekkhe.eeieflkksnqqlkeqle 186
                      +e++    ++e+e + l+ ++++l++ +++  k++ +  q ++ + e e ++ l +++++l ++l+
       CCD26514.1 195 TEMRT---KMEDEFRMLKLEMSNLQNTIDKFIKDNGNSSQVDQINTEiESLKNLIRNSSNLPQELN 257
                      44444...59*********************99999999998877661446777788888877775 PP

>> TMPIT  TMPIT-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   3.8     0.063        38       6      83 ..     140     192 ..     132     203 .. 0.40
   2 ?    7.1   5.6    0.0046       2.8       8      92 ..     174     255 ..     163     259 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.063
       TMPIT   6 elekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlk 83 
                 +le++ +e++++++++ + l+ +++ q +++++                         ee +++el++ +++ +++++
  CCD26514.1 140 KLEQDKEEIKNQFNRVDKVLNAIEQEQAEFKEH-------------------------EEAKMNELDDVIRDLNMTVD 192
                 344444444444444444444444444444433.........................33333333333333333332 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0046
       TMPIT   8 ekefkeleetakeykqkleelsklqskcskeikkqkkrlkelksslkklkksvkeeeeeeveelkeelkerkkvlkevesllpkk 92 
                 e +++el +  + ++ ++++++++ +k+  e +  k ++++l+++++k+ k+  + ++++v+++++e+++ k+ +++ ++l p++
  CCD26514.1 174 EAKMNELDDVIRDLNMTVDRTTEMRTKMEDEFRMLKLEMSNLQNTIDKFIKD--NGNSSQVDQINTEIESLKNLIRNSSNL-PQE 255
                 4567889999999999999999999999999999999999999999999988..67999**************99987664.665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2072  (0.115567); expected 358.6 (0.02)
Passed bias filter:                      749  (0.0417759); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                        38  (0.00211947); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.80u 0.32s 00:00:01.12 Elapsed: 00:00:00.47
# Mc/sec: 2391.47
//
Query:       CCD26515.1  [L=273]
Description: hypothetical protein NDAI_0H03420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.3e-10   41.4   0.0    2.7e-10   40.4   0.0    1.6  1  ACPS      4'-phosphopantetheinyl transferase superfamily


Domain annotation for each model (and alignments):
>> ACPS  4'-phosphopantetheinyl transferase superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.5e-14   2.7e-10       1      88 [.     127     216 ..     127     243 .. 0.71

  Alignments for each domain:
  == domain 1  score: 40.4 bits;  conditional E-value: 1.5e-14
                 EEEEEEEEHHHHH.HHH----....-HHHHHS-HHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTS-SSS.S--GGG-EEEE-TTS-EEEE CS
        ACPS   1 gvGiDieklsrlrkrvkrrga....kilkrifteeErkllkssdeearaelfarlWaaKEAllKalgpglrk.lldfksievledstgrptle 88 
                 +vGiD+ ++ + +     + +    + +k if+++E+  +k+++ e+  elf+ +W++KE++ K +g+gl+  l  ++  e+l+ +++   ++
  CCD26515.1 127 QVGIDMASIYDTTGN---EDEildvDAFKGIFHKDELPTFKNCSTEKLGELFTYYWSLKECYTKFTGTGLNYdLTKINMGEILDYDDSDEKVT 216
                 59*****88888844...33356789999*************99999999********************55555555444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       403  (0.0224776); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2088.11
//
Query:       CCD26516.1  [L=369]
Description: hypothetical protein NDAI_0H03430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.2e-31  108.1   7.0    8.9e-08   31.8   0.1    6.2  6  Prenyltrans      Prenyltransferase and squalene oxidase repea
  ------ inclusion threshold ------
      0.017   14.3   0.0      0.041   13.0   0.0    1.7  2  SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain


Domain annotation for each model (and alignments):
>> Prenyltrans  Prenyltransferase and squalene oxidase repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.26   2.3e+03      32      43 ..      94     105 ..      93     106 .. 0.85
   2 !   27.0   0.2     3e-10   2.7e-06       4      44 .]     118     169 ..     115     169 .. 0.95
   3 !   31.8   0.1   9.9e-12   8.9e-08       1      44 []     180     221 ..     180     221 .. 0.97
   4 ?   -1.1   0.0      0.19   1.7e+03       3      14 ..     233     244 ..     233     250 .. 0.90
   5 !   22.5   0.0   7.6e-09   6.8e-05      16      43 ..     265     292 ..     263     293 .. 0.95
   6 !   24.4   0.0   1.9e-09   1.7e-05       8      44 .]     308     346 ..     301     346 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 0.26
                  HHHHHHHHHHHC CS
  Prenyltrans  32 ytywalaaLall 43 
                  +t++al++L +l
   CCD26516.1  94 NTLFALLTLLIL 105
                  699****99776 PP

  == domain 2  score: 27.0 bits;  conditional E-value: 3e-10
                  HHHHHHHHHHSH.TTS-BBSSTTS..........SBBHHHHHHHHHHHHHCT CS
  Prenyltrans   4 ekavefLlscQn.edGGwggrpgs..........esdtyytywalaaLallG 44 
                  +++++f+ +cQ+ +dG++ +                d++++y+a+a+L+l+G
   CCD26516.1 118 KSVCRFVSKCQDaKDGSFVSVLRLysnnepspvdSNDLRFCYIAVAILYLCG 169
                  689*****************999999********99***************8 PP

  == domain 3  score: 31.8 bits;  conditional E-value: 9.9e-12
                  HHHHHHHHHHHHHSHTTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   1 idvekavefLlscQnedGGwggrpgsesdtyytywalaaLallG 44 
                  idvek++++++  Q++ GG+g    +e++++yt +al+aL+ll+
   CCD26516.1 180 IDVEKMLRYIKEQQCDMGGYGTY--GEPHAGYTSCALSALYLLD 221
                  79*********************..999**************96 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.19
                  HHHHHHHHHHHS CS
  Prenyltrans   3 vekavefLlscQ 14 
                  +ek + +Ll +Q
   CCD26516.1 233 KEKSITWLLHRQ 244
                  689999****99 PP

  == domain 5  score: 22.5 bits;  conditional E-value: 7.6e-09
                  TTS-BBSSTTSSBBHHHHHHHHHHHHHC CS
  Prenyltrans  16 edGGwggrpgsesdtyytywalaaLall 43 
                  ++GG++gr ++  dt+y +w+l++L++l
   CCD26516.1 265 DHGGFQGRENKFGDTCYVFWCLNSLKIL 292
                  68************************98 PP

  == domain 6  score: 24.4 bits;  conditional E-value: 1.9e-09
                  HHHHHHSH..TTS-BBSSTTSSBBHHHHHHHHHHHHHCT CS
  Prenyltrans   8 efLlscQn..edGGwggrpgsesdtyytywalaaLallG 44 
                   +Ll + +    GG++ + + ++d+y+t+ ++aaL+l++
   CCD26516.1 308 KYLLERTQntIIGGFSKNDEDDPDLYHTCLGIAALKLID 346
                  566666666899************************985 PP

>> SQHop_cyclase_C  Squalene-hopene cyclase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.38   3.4e+03      67     108 ..      29      71 ..      25     103 .. 0.62
   2 ?   13.0   0.0   4.5e-06     0.041     158     235 ..     179     263 ..     159     289 .. 0.68

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 0.38
                      BHHHHHHHHHHHTT---ST.HHHHHHHHHHHHHHHHHTB-TTS CS
  SQHop_cyclase_C  67 dvddtavvvlalkrvrlke.ekkkeeaiaraveWilglqsknG 108
                      dv+  a++ +a++++   + ++  + + + +++Wi +   kn 
       CCD26516.1  29 DVNRMAIIFYAIETLSSLDpSSIITYKKKNTIHWIRSHYLKNE 71 
                      6666666666666665443133345555556666666554444 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 4.5e-06
                      SHHHHHHHHHHHHHS-TTS----SSBSSHHHHHHHHHHHH...HHTT--.TTSHHHHHHHHHHHTT--TTSS....BB--GGGGT- CS
  SQHop_cyclase_C 158 sealkraveylkkeqepdGsWfGrWGvnyiyGtwsvlsal...aavged.leepvirkavdWlksvqnedGG....WGesaesykd 235
                         +++ + y+k++q   G  +G +G  +   t ++lsal   + ++e+ l++++ +k++ Wl ++q  + G      e++ sy++
       CCD26516.1 179 YIDVEKMLRYIKEQQCDMGG-YGTYGEPHAGYTSCALSALyllDRIDEEeLSDDFKEKSITWLLHRQIFNQGsmsyMNENNPSYDE 263
                      4457899****987777665.788887665555555555511156665437889999********997655522223456666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       488  (0.0272185); expected 358.6 (0.02)
Passed bias filter:                      374  (0.0208601); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2600.98
//
Query:       CCD26517.1  [L=577]
Description: hypothetical protein NDAI_0H03440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-16   61.0   0.2    2.2e-16   60.4   0.2    1.3  1  NAD_binding_6   Ferric reductase NAD binding domain
      1e-15   58.0  11.8      1e-15   58.0  11.8    2.4  2  Ferric_reduct   Ferric reductase like transmembrane component
    5.1e-05   23.3   0.2    0.00014   21.9   0.2    1.7  1  FAD_binding_8   FAD-binding domain
  ------ inclusion threshold ------
       0.93    9.0   4.8        1.5    8.4   4.8    1.2  1  GCIP            Grap2 and cyclin-D-interacting


Domain annotation for each model (and alignments):
>> NAD_binding_6  Ferric reductase NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.2   4.9e-20   2.2e-16       3     154 ..     371     562 ..     369     564 .. 0.85

  Alignments for each domain:
  == domain 1  score: 60.4 bits;  conditional E-value: 4.9e-20
                    xxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6   3 nvllvagGiGitpfisilkdllkksk.......kealktkkikliwvvressslewfkdvLneleeeksegnieihiYlTseyeaedasdqlissi 91 
                     + +v gG+Gi++ ++i+  l + ++       ++  +++++kliw++r+  +le+++d+Ln   ++ ++ + ++ iY++++++ +++ d  i++ 
     CCD26517.1 371 KIAIVVGGSGISFGLPIFTYLTQSLSqndnvdqSQMDSIEECKLIWLIRDVAQLEIVEDYLNARFRNLPK-KSQLLIYISKSKSRSENNDMEIEMD 465
                    6789*******************99999****99999************************988888888.9*************88877777773 PP

                    xxxxxxxxx............................xxxxxxxxxx.....xxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxxxxxxxx RF
  NAD_binding_6  92 egenseslk............................qgvdavsgtr.....nvkihfgRPnlkevlkdi....askhknssvgvfvCGppklvke 150
                            +                            ++ d+  +tr     +++ihf+R n+ + l+++     +  k+++ ++f+CGp+kl+++
     CCD26517.1 466 SLMRG---SdqindddnndndndndndndgcsedsknSKNDINGQTReiiklKKSIHFKRFNFIDDLSSMasnnNDYMKGNENWLFCCGPDKLNRD 558
                    32222...122457788888889999999999999884448888888999999*****************66655667899*************99 PP

                    xxxx RF
  NAD_binding_6 151 vkkl 154
                     k  
     CCD26517.1 559 AKDF 562
                    8876 PP

>> Ferric_reduct  Ferric reductase like transmembrane component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   3.0      0.29   1.3e+03      66     121 ..      27      95 ..      11      99 .. 0.64
   2 !   58.0  11.8   2.3e-19     1e-15       2     124 ..     117     229 ..     116     230 .. 0.91

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.29
  Ferric_reduct  66 deerlldsllkkpynllGvlalllliilaitSlkfirrrls.............yelFyylHhllyvay 121
                    ++++++  +++  y  lGv ++++ i+ ++  +++  ++++             ++ F+ l +++++++
     CCD26517.1  27 AGTGTHFANIQYGYYVLGVSLFYIVILSFLQYFNIHLKNRMklnsskilrwaisFNPFFHLFIIMILVM 95 
                    566777788888888888888888888888775555544434445555555444666666666666655 PP

  == domain 2  score: 58.0 bits;  conditional E-value: 2.3e-19
  Ferric_reduct   2 GiaalillplalllalRnnflepltglsldklllfHkwlgvlafllallHvilyllnflrfsaldeerlldsllkkpynllGvlalllliilaitS 97 
                    G+++++l+ + lll  R         +++ +l+ +Hkwl+++++l+a++H i+y++ ++  +    +  l+ + kkp nl+G++++ ++i+l+  S
     CCD26517.1 117 GRLSYVLVTMNLLLNFRV-----HKWFNYVDLVPLHKWLSRFLALFAIIHSIGYFVRWTVVK----RYSLAAQCKKPLNLVGIILFGFIILLIGAS 203
                    888999999999999665.....34457888999*************************965....999*************************** PP

  Ferric_reduct  98 lkfirrrlsyelFyylHhllyvaylll 124
                    +k++r r++y+ Fy++H l+ + ++++
     CCD26517.1 204 TKPFR-RWNYKAFYIIHNLMNLCFIIM 229
                    *****.****************99987 PP

>> FAD_binding_8  FAD-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.2   3.1e-08   0.00014       8      71 ..     269     337 ..     263     366 .. 0.79

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 3.1e-08
  FAD_binding_8   8 kvalleedliklkvskpkks.lkykaGqyvyin.i.pslsklfw..qsHPFtiasapeddklslvikvk 71 
                    kv   e++l  +++++++ +  ++  + +++i  + + l+++fw  +sHP++ias++ d +++l+i + 
     CCD26517.1 269 KVTSDETNLTLVQIPRSSIPtANFPLTTHIRIAeCnNILNPFFWiyPSHPYSIASVSTDPYIDLIISES 337
                    56666788888999998877678888999999625666778855449*******************875 PP

>> GCIP  Grap2 and cyclin-D-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.8   0.00033       1.5     108     182 ..     434     515 ..     432     543 .. 0.70

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00033
                 TTTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH...........S------------------TTS--HHHHHHHHHH CS
        GCIP 108 alkklpkdNktAilraieevlglvkDaleEmkellee.......edeeedededdldddedeergnqdrklseeekevikav 182
                 ++ +lpk+ + +i    +++++  +D+  Em+ l  +       +++++d d+d+++d+  e  +n+++ ++ + +e+ik  
  CCD26517.1 434 RFRNLPKKSQLLIYISKSKSRSENNDMEIEMDSLMRGsdqinddDNNDNDNDNDNDNDGCSEDSKNSKNDINGQTREIIKLK 515
                 577899999999999999999999********88888444433244444444444444444467778888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1099  (0.0612973); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.61u 0.24s 00:00:00.85 Elapsed: 00:00:00.41
# Mc/sec: 4226.84
//
Query:       CCD26518.1  [L=1087]
Description: hypothetical protein NDAI_0H03450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-81  273.7   0.4    2.7e-81  273.1   0.4    1.3  1  Glyco_hydro_38N  Glycosyl hydrolases family 38 N-terminal dom
    7.4e-52  176.5   0.1    1.7e-51  175.3   0.0    1.7  2  Glyco_hydro_38C  Glycosyl hydrolases family 38 C-terminal dom
      7e-27   93.4   0.0      2e-26   92.0   0.0    1.8  1  Alpha-mann_mid   Alpha mannosidase middle domain
    6.3e-10   39.0   0.9    4.9e-09   36.2   0.9    2.5  1  Glyco_hydro38C2  Glycosyl hydrolases family 38 C-terminal bet


Domain annotation for each model (and alignments):
>> Glyco_hydro_38N  Glycosyl hydrolases family 38 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.1   0.4   6.1e-85   2.7e-81       2     289 .]     296     564 ..     295     564 .. 0.97

  Alignments for each domain:
  == domain 1  score: 273.1 bits;  conditional E-value: 6.1e-85
                      EEEEEEEE--SSSSS-HHHHHCCTCHHHHHHHHHHHHHSTT--EEES-CHHHHHHHCCS-CCCHHHHHHHHHCTSEEECTT-SS-B-SSSS-HH CS
  Glyco_hydro_38N   2 vhvvpHsHiDvgWlktvdeyqrrkvqrilssvlellerdpdrkFilseaslferwweeapeekkelvkklvaegrlevvgGgwvenDealpsge 95 
                      v+ ++ +HiD++Wl++++e+ +rk+ r++ s+++l++++p+++F++s+a++f+++ +e+pe +k+++  +v++ ++ ++gG+wvenD+++p ge
       CCD26518.1 296 VYSIGNCHIDTAWLWPFAET-KRKIVRSWASQCTLMDEYPEYQFAASQAQQFKWLLQEHPEFFKNVLVPKVQQSQFFPIGGSWVENDTNIPGGE 388
                      899*****************.************************************************************************* PP

                      HHHHHHHCCCHHHHCCH--EESEEEESSSSSB-TCHHHHHHCTT--EEEESSS-HHCHCCHHHTT-SCEEEE-TTSTEEEEEE--TT.SSHCCC CS
  Glyco_hydro_38N  96 slirqlleGqrflkeefgvrpkvaWliDpFGysatlPqllkkaGidsfltqrlsyndknkfaeqkhlefiWrgsdgteilthmlpadsydptyg 189
                      sl+rq++ Gqrf+ + fg++++++Wl+D+FGys+++Pql++ +Gi++fltq+ls+n++n+f   +h++f+W g+dg+++lthm+p +    ty+
       CCD26518.1 389 SLARQFFFGQRFFLKYFGIKSDIFWLPDTFGYSSQVPQLCQLSGITKFLTQKLSWNNINSF---PHSTFNWAGIDGSQLLTHMPPGN----TYT 475
                      *************************************************************...*********************98....788 PP

                      CCC.GGGTTTHHHCHHHHHHCHHHHHTTSSSSEEEEEECEETHCCCCHHHHCCHHHHHHHHHHC.....SSEEEEC--H.HHHHHHHHHHS... CS
  Glyco_hydro_38N 190 fqfdfkrdenvkeraekllaqvkklaektrtnevllplGddfadgqggnteklleeinrsneke.....slpkvqfgtp.seYfdalekenaef 277
                      ++           ++ ++l+++k+ ++ +     l+++G++  dg+gg+t+++le+++r ++ +     + pk+++gt  +e+ +++ k     
       CCD26518.1 476 ADS----------HFGDVLRTAKQNKSAEFYGAGLMLYGKG--DGGGGPTREMLEKMRRIRSMSnkngnVIPKLEVGTDvDEFYQDILK----- 552
                      888..........****************************..****************998555778899******976*********..... PP

                      HCE-ESSB-S-E CS
  Glyco_hydro_38N 278 ptkdsddfpvya 289
                      +t++++d+p+++
       CCD26518.1 553 RTNQGNDLPTWS 564
                      8888*******5 PP

>> Glyco_hydro_38C  Glycosyl hydrolases family 38 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.5   6.8e+03     132     153 ..     472     493 ..     470     495 .. 0.85
   2 !  175.3   0.0   3.8e-55   1.7e-51       2     214 .]     716     934 ..     715     934 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.5
                      CEEEEETTTCEEEEESSTTTT. CS
  Glyco_hydro_38C 132 efatdengfgvikRptdqntsw 153
                      +++t+++ fg + R  +qn+s 
       CCD26518.1 472 NTYTADSHFGDVLRTAKQNKSA 493
                      689**************99654 PP

  == domain 2  score: 175.3 bits;  conditional E-value: 3.8e-55
                      TTSS-EEEE.TTTSSEEEEESTTTS-EEE....EEE.....EEEEEEEECS-S-SSS--BSTT-EEEE--..S-EEECEE-SS-EEEEEEETTE CS
  Glyco_hydro_38C   2 eNgflkveidaknGtlksiydkeakrevlke.qvgn.....qfaayedapdssdaydfkpdneekplevse.keveviesgplvaevtvkfkie 88 
                      +Ng l v +d  +G + si+d   ++e ++  + +n     qf++++d+p s++a+d++ ++ ++++++++ ++v vi+ ++   +++v +k +
       CCD26518.1 716 SNGKLSVSVDRVTGAIVSIIDLSSGKEFIDLkHGRNklganQFVIFDDKPLSWQAWDTELYSVNQYKYLTKiEHVDVISASKKGVTIEVVVKVS 809
                      79****************************98766688888******************************87778888899999999999999 PP

                      S...EEEEEEEE......ECCCCEEEEEEEE.-TTECEEEEEEEE---TTCEEEEETTTCEEEEESSTTTT...S..SEGGGG-EEESSEEEEE CS
  Glyco_hydro_38C  89 aestisqeirLy......kgkkriefevkvd.weekevllkvafpidiqaefatdengfgvikRptdqntsweaakfeviagnyypiqsfvdlq 175
                      ++++i+++i+L        + ++i++ + v+ w++k+++lkv+fp++i++efa++e++fgv+kRpt++ntsw+ akfev      + ++f+d++
       CCD26518.1 810 EDCKINTKITLPaanpstLEGSQINICTIVEnWQAKNKFLKVEFPVNIRNEFASYETQFGVTKRPTHYNTSWDVAKFEV------CQHKFADYS 897
                      9***********999999999**********************************************************......********* PP

                      -SSEEEEEEECS-EEEEE-SSTTEEEEEEEEEBSSS-TT CS
  Glyco_hydro_38C 176 desygvavlndskyGvssleqggqleLsLlRrplypdpr 214
                      + s+gv++ln++kyG+s+  +g+ ++LsLlR+p++pd++
       CCD26518.1 898 EFSKGVSILNNCKYGFST--HGNLMRLSLLRSPKAPDAH 934
                      ******************..9****************85 PP

>> Alpha-mann_mid  Alpha mannosidase middle domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   4.4e-30     2e-26       1      95 [.     570     668 ..     570     669 .. 0.96

  Alignments for each domain:
  == domain 1  score: 92.0 bits;  conditional E-value: 4.4e-30
                     EE--GGGTSSCHHHHHHHHHHHHHHHHHHHCCTTT...-SCGC-HHHHHHHHHHHHHHHTCTTTTTT-S-HHHHH.HCCHHHHHHHHHHHHHCCC CS
  Alpha-mann_mid   1 elhrgtfTSrarlKrlnrkleslLraaellssaaa...skgyeypkeeleelwkalllnqfHDilpGtsieeVye.daeerlaealkeleklles 91 
                     e+hrgt+TS+a++Krl+r +e +L+++e+++++a+    ++y+yp  +++elw+++ll+qfHD+lpG++ie Vy+ +  + l++++ke+e lle+
      CCD26518.1 570 EFHRGTYTSQAQTKRLMRLAEIKLHDVEWIATKASilyPDEYKYPIAKINELWENVLLCQFHDVLPGSCIEIVYKyESTPLLEKVVKECEGLLEE 664
                     79******************************77789999******************************************************9 PP

                     CCCC CS
  Alpha-mann_mid  92 alrk 95 
                      ++ 
      CCD26518.1 665 VMTF 668
                     9876 PP

>> Glyco_hydro38C2  Glycosyl hydrolases family 38 C-terminal beta sandwich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.9   1.1e-12   4.9e-09       6      69 .]    1011    1084 ..     991    1084 .. 0.80

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 1.1e-12
                       EEEE-TT..T--EEEEEEESSSSSBEEE-EETT.SCEEEEE-TTSSB-...............-TTSEEXTTXEEEEE CS
  Glyco_hydro38C2    6 tlkkaed..eddlllRlynlseegedatlslsqpvksvnvknllEttlape............eleielkPmEIrTfi 69  
                       +lk      +d +++R+y++ +++++atl  s p+ksv++ + lE +  +e            e+ i+l+P+EI++++
       CCD26518.1 1011 ALK---TneNDTMVVRVYESLGGEATATLFSSLPIKSVEKIDNLELEV-EElvtvkknekdifEIPITLRPFEIASYR 1084
                       344...14489*******************************999999.335666677889**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1087 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       439  (0.0244855); expected 358.6 (0.02)
Passed bias filter:                      343  (0.019131); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.71u 0.25s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 7677.55
//
Query:       CCD26519.1  [L=625]
Description: hypothetical protein NDAI_0H03460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-61  207.2   0.0    6.5e-61  206.0   0.0    1.6  1  Pkinase      Protein kinase domain
    4.5e-27   95.0   0.0      1e-26   93.8   0.0    1.6  1  Pkinase_Tyr  Protein tyrosine kinase
    2.9e-05   23.6   0.1       0.25   10.6   0.0    2.3  2  Kinase-like  Kinase-like
    0.00046   19.6   0.0    0.00086   18.7   0.0    1.3  1  Kdo          Lipopolysaccharide kinase (Kdo/WaaP) family
     0.0025   17.5   0.2      0.019   14.6   0.1    2.2  2  FTA2         Kinetochore Sim4 complex subunit FTA2
  ------ inclusion threshold ------
      0.027   14.4   0.1       0.21   11.5   0.1    2.0  2  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.0   0.0   2.2e-64   6.5e-61       1     264 []     173     483 ..     173     483 .. 0.89

  Alignments for each domain:
  == domain 1  score: 206.0 bits;  conditional E-value: 2.2e-64
                 EEEEEEEEEESSEEEEEEEE..TTTT.........EEEEEEEEECHCHCHHHH..........HHHHHHHHHHHHHS..CTTB--EEEEEEESSEEEEE CS
     Pkinase   1 yekleklGeGsfGkVykave..ketg.........kivAvKkikkekakkkke..........kkvlrEikilkklk..hpnivrlyevfeekdelylv 76 
                 y+ lek+G+G+f++Vy+a    ++t+         + vA+K+ikk + k+++           ++vl+E++i+++ +  +p+iv +++++e+k+++y++
  CCD26519.1 173 YTLLEKIGKGAFSVVYRAAPimSSTSktsylsevyENVAIKVIKKVDLKDSTSkldtkhstsrEQVLKEVSIHQQASsqCPEIVDFIDFIETKSYYYII 271
                 67899***********9853112222111222222689*******998887777889999999***********99888******************** PP

                 EE--TTEBHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEET..................................TTEEEE-S CS
     Pkinase  77 leyveggeladllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLide..................................kgelKitD 141
                 +ey++gge+ d + + + +se+ ++++++q+++++++lH  giiHrD+KpeN+L++                                    g++K+tD
  CCD26519.1 272 QEYLKGGEIYDEIVKFTYFSEDLTRHVIQQLAHAVKHLHTLGIIHRDIKPENLLFEPielipsqvrklrktdnpftkvdegefrpgiggggIGKVKLTD 370
                 *************99999**************************************778****************9999888888888777777***** PP

                 GTTSEESSSSCSBCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHH CS
     Pkinase 142 FGlakelessskltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdl 240
                 FGl+k+l +++ +++ +gt  Y +PE++++++y++k+D+W++G++ly+ll+g ppf+++++k+ ++k+ +         g++++  p+++eis+ea+  
  CCD26519.1 371 FGLSKKLFNET-ADTPCGTISYASPEIIRNKSYTTKTDLWGIGCVLYTLLCGFPPFYADQNKSITRKIRH---------GDYHFLAPWWNEISPEAQYC 459
                 *********98.*********************************************7776664444444.........48999*************** PP

                 HHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 241 lkkllkkdpkkRltaeellqhpyl 264
                 +++ll++dpkkR+++++ll++p+l
  CCD26519.1 460 VSRLLEVDPKKRYSIDDLLNDPWL 483
                 ***********************7 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   3.4e-30     1e-26       3     256 ..     175     478 ..     173     480 .. 0.87

  Alignments for each domain:
  == domain 1  score: 93.8 bits;  conditional E-value: 3.4e-30
                  EEEEEEEESSEEEEEEEEET.......TTTSSEEEEEEEEEST...........TSSHHHHHHHHHHHHHHHTS..-BTTB--EEEEEESSSSEEEEE CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkg.......ekekkevkVavKtlke...........eateeekeelleeakimkkl..khpnivkllgvctkeepllivt 80 
                  l +k+G+Gaf+ V+++   +         ++  ++Va+K++k+           +++++++e++l+e++i ++   + p+iv ++ ++  ++ ++i+ 
   CCD26519.1 175 LLEKIGKGAFSVVYRAAPIMsstsktsYLSEVYENVAIKVIKKvdlkdstskldTKHSTSREQVLKEVSIHQQAssQCPEIVDFIDFIETKSYYYIIQ 272
                  779************98777667666555677789*****9866666666655455566699*********9998889******************** PP

                  E--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE..................................TTEEEE CS
  Pkinase_Tyr  81 eyvkgGdLlkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse..................................nkvvki 144
                  ey+kgG++ + + k   + ++ + + ++++q+A+++++L++  ++Hrd+   N L +                                     +vk+
   CCD26519.1 273 EYLKGGEIYDEIVKF--TYFSEDLTRHVIQQLAHAVKHLHTLGIIHRDIKPENLLFEPielipsqvrklrktdnpftkvdegefrpgiggggIGKVKL 368
                  ************997..8888888999******************************999*****************************99888**** PP

                  -STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTSHHHHHHHHHHTT.EES-BB..TTSBHHHHHHHH CS
  Pkinase_Tyr 145 sDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsfGvllwEiftlgespypglkneevleklkeg.krlekp..ekcpeelyelmk 239
                  +DfGL++++ +    +++++    + + +pE++++k++t+k+D W  G +l+ +++ g  p+   +n+++++k+++g ++  +p  +++++e +  ++
   CCD26519.1 369 TDFGLSKKLFN----ETADTPCGTISYASPEIIRNKSYTTKTDLWGIGCVLYTLLC-GFPPFYADQNKSITRKIRHGdYHFLAPwwNEISPEAQYCVS 461
                  *********33....3344455689******************************9.*****************665155555533678888888888 PP

                  HHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 240 kcweedpeeRptfselv 256
                  + +e dp++R ++ +l+
   CCD26519.1 462 RLLEVDPKKRYSIDDLL 478
                  88999999999888776 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0     9e-05      0.27     141     179 ..     291     328 ..     276     342 .. 0.87
   2 !   10.6   0.0   8.5e-05      0.25     223     255 ..     398     430 ..     364     443 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 9e-05
  Kinase-like 141 letiarlllTlqlirlaanLqakglvhgkftvdnlllde 179
                   e++ r+++  ql   + +L+ +g++h +++++nll+++
   CCD26519.1 291 SEDLTRHVI-QQLAHAVKHLHTLGIIHRDIKPENLLFEP 328
                  577889999.8999**********************986 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 8.5e-05
  Kinase-like 223 nktkmthkldaWqlGlviyriwclklPltlate 255
                  ++  +t k+d W++G v y + c   P+  +++
   CCD26519.1 398 RNKSYTTKTDLWGIGCVLYTLLCGFPPFYADQN 430
                  67789******************9999877665 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.9e-07   0.00086      99     153 ..     275     328 ..     265     338 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 2.9e-07
         Kdo  99 legaqdLedllakwaelaeelkrallkavgrliaklhragvnHadlyaknillqq 153
                 l+g +  +++++ +  ++e l+r+ +++++ +++ lh +g+ H+d+ + n+l++ 
  CCD26519.1 275 LKGGEIYDEIVK-FTYFSEDLTRHVIQQLAHAVKHLHTLGIIHRDIKPENLLFEP 328
                 555554455555.455899********************************9975 PP

>> FTA2  Kinetochore Sim4 complex subunit FTA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.17   5.1e+02      15      41 ..     163     190 ..     151     197 .. 0.84
   2 !   14.6   0.1   6.5e-06     0.019     154     204 ..     264     325 ..     201     329 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.17
        FTA2  15 pFdfsae.kdiefleyLgkglhsiVlkv 41 
                 +F+ + e +++ +le +gkg+ s+V+++
  CCD26519.1 163 KFNEQSElESYTLLEKIGKGAFSVVYRA 190
                 4666666888999************997 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 6.5e-06
        FTA2 154 krpiraIVKel...........ellkeqeelevsqlpkllrdlkklhklgIvvrDlkeenyi 204
                 ++  + I++e+           ++ + +e l+   +++l + +k lh lgI++rD+k+en++
  CCD26519.1 264 TKSYYYIIQEYlkggeiydeivKFTYFSEDLTRHVIQQLAHAVKHLHTLGIIHRDIKPENLL 325
                 344577788888888888887777899999****************************9975 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0069        21      33     108 ..     234     312 ..     225     313 .. 0.82
   2 ?   11.5   0.1   7.2e-05      0.21     146     181 ..     292     327 ..     286     332 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0069
                 -HHHHHHHHHHHHHHHHTT-B--B-CTTBS-EEETTEEEEEEE----EE-SS......HHHHHHHHHHHHHHHHHHCCHHCH CS
         APH  33 aaeeirrevallrlLakagvpvPevlagdtddeeigllfalieyvpgrsllr......klsaaqlpellealgeflaalhqv 108
                 + e++ +ev + ++ + +   +Pe++++    e + +++ ++ey+ g  +++      + s++ +++++++l+ + ++lh +
  CCD26519.1 234 SREQVLKEVSIHQQASSQ---CPEIVDFIDFIETKSYYYIIQEYLKGGEIYDeivkftYFSEDLTRHVIQQLAHAVKHLHTL 312
                 467777777777776666...99999987555555558********************9999*****************976 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 7.2e-05
                 HHHHHHHHHHHHHH--SSS-EEEE-SS-SGGGEEEC CS
         APH 146 eeleeqvlaalaallpgelptvllHgDlhpgNllvd 181
                 e+l++ v+++la  +      +++H+D++p Nll++
  CCD26519.1 292 EDLTRHVIQQLAHAVKHLHTLGIIHRDIKPENLLFE 327
                 57788899999988888999**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1543  (0.0860617); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.45
# Mc/sec: 4157.07
//
Query:       CCD26520.1  [L=172]
Description: hypothetical protein NDAI_0H03470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.2e-31  109.2   0.1    1.9e-31  108.5   0.1    1.3  1  UPF0029   Uncharacterized protein family UPF0029
  ------ inclusion threshold ------
      0.063   12.9   0.1          2    8.0   0.0    2.1  2  TraH_2    TraH_2


Domain annotation for each model (and alignments):
>> UPF0029  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.1   2.1e-35   1.9e-31       1     105 []      29     165 ..      29     165 .. 0.95

  Alignments for each domain:
  == domain 1  score: 108.5 bits;  conditional E-value: 2.1e-35
                 TTEEEEEEEEE-SSHHHHHHHHHHH--..TT...SSEE.EEEE....EE................................TTEE-TTSSTSHHHHHHH CS
     UPF0029   1 kkSrFiavlaaveseeevkaileelkkenkk...athn.iyAyrlrqkvek............................vnedsdddgEpaAGkkllel 67 
                 +kS+F+a++++++++++++ +l++l ++nk+   a+h  ++A+r+ +   +                            ++++s+d+gE++AG++ll+l
  CCD26520.1  29 RKSKFQARCCRIKNQNDIPILLQNLINTNKNvskASHIhMFAWRTGELSVQsnvedkakskrkntkkkthdhpndviknIQQGSSDCGEAGAGQRLLTL 127
                 79***********************999998889***88****9988776689******************999999999999**************** PP

                 HHHTTB-SEEEEEEEE--SS--HHHHHHHHHHHHHHHH CS
     UPF0029  68 LekeklenvlvvvtRwfGGikLGpgrlraiseaareaL 105
                 Le++++ nvlv+vtRw+GG+ LG++r+r+is++a e L
  CCD26520.1 128 LERSNIVNVLVIVTRWYGGTPLGSARFRHISSTAVESL 165
                 ********************************998865 PP

>> TraH_2  TraH_2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1    0.0057        51     133     169 ..      68     104 ..      55     124 .. 0.65
   2 ?    8.0   0.0   0.00022         2     106     141 ..     134     170 ..     105     172 .] 0.87

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.0057
      TraH_2 133 veawktGefeGvsvfqaadpGkvvateealgaededv 169
                 + aw+tGe+  +s  +++   k + t+++ +++ +dv
  CCD26520.1  68 MFAWRTGELSVQSNVEDKAKSKRKNTKKKTHDHPNDV 104
                 689*****99988776666555555555554444433 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00022
      TraH_2 106 akvlrivakwyG.npkeddvlpqifedaveawktGef 141
                   vl iv++wyG +p  +  +  i   ave+ k G f
  CCD26520.1 134 VNVLVIVTRWYGgTPLGSARFRHISSTAVESLKKGGF 170
                 57999******6489*****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       969  (0.0540465); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1324.62
//
Query:       CCD26521.1  [L=224]
Description: hypothetical protein NDAI_0H03480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
  ------ inclusion threshold ------
       0.16   11.2   0.0        0.2   10.9   0.0    1.1  1  IgGFc_binding  IgGFc binding protein


Domain annotation for each model (and alignments):
>> IgGFc_binding  IgGFc binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.1e-05       0.2      40     103 ..      81     169 ..      51     187 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 1.1e-05
  IgGFc_binding  40 TtVtitpsvdvtggggve.............aagepltvtLnkgevlqlq............seedltGtritsdkpvaVfsGhscanv 103
                    + +++++s ++++++++e             +  + l+++Lnkg++++              + e+l G++ + d+p  V+sG+++++v
     CCD26521.1  81 NDIRFSCSMRIKFNNNFEydgerkfdnfineKFVKELKIRLNKGKIYNAPathhhennihgeHGEGLLGAIYVDDQPPLVLSGSNYQTV 169
                    5566666666666664444333333354322222566**********8888999999999**99*******************998777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      483  (0.0269396); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1686.35
//
Query:       CCD26522.1  [L=382]
Description: hypothetical protein NDAI_0H03490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.3e-09   35.5   0.2    2.8e-05   23.2   0.0    2.5  2  OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin famil
  ------ inclusion threshold ------
       0.13   12.1   0.0       0.69    9.7   0.0    2.0  2  Nsp3_PL2pro      Coronavirus polyprotein cleavage domain


Domain annotation for each model (and alignments):
>> OCD_Mu_crystall  Ornithine cyclodeaminase/mu-crystallin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   3.2e-09   2.8e-05      65     151 ..      75     164 ..      25     177 .. 0.72
   2 !    9.8   0.1   3.9e-05      0.35     219     314 ..     272     375 ..     264     379 .. 0.56

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.2e-09
                      EEEEEEEEEETTTCCCTSSSEEEEEEEE-TTT--EEEEEE-HHHHHHHHHHHHHH..HHHHHS-TT--EE........EEE--SHHHHHHHHHH CS
  OCD_Mu_crystall  65 llgvKlvnshpenkksglptvtalvvLndpetGvplalmdatlltalRTaAvsav..aakyLarkdasvl........aiiGaGvqaetqleal 148
                      ++gvK   + p+    gl+   + + + dp+tG  la+ +a  +ta+RTa vs +    ++L +++ + l         i+G G qa+ +++++
       CCD26522.1  75 YVGVKTLFGSPD----GLQ---GSITITDPHTGKFLAVFEAKEMTAIRTAIVSCIplNHRFLHSENENKLrtngviniVIFGTGLQARWHALIC 161
                      555555555443....444...446679*************************9933468899998775433322222689***********99 PP

                      CCC CS
  OCD_Mu_crystall 149 kav 151
                       +v
       CCD26522.1 162 LKV 164
                      876 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 3.9e-05
                      EEE-S--STT--SB-HHHHHC.....CEEEE.SHHHHHHHCCCCHCHHHTTSSTCGGEEEEHHHHHCTSS-..-.......STTSEEEEE---- CS
  OCD_Mu_crystall 219 inavgadapgkteLdddilkr.....adifv.dseaqareeGeiqvaiekgvlaedakvaelgeviaGkkpGRt.......sdeeitlfdsvGl 299
                      i ++g+ +p  +e d++++++     ++i+v ++e  + e Ge+     ++   + +  +e g v + k +          + +e+tl ++vGl
       CCD26522.1 272 ISLIGSYRPSMHECDNELIQEfqkqgVKIIVdSKEHTLAEAGELIS---ND--VQPNELKEYGTVFSRKEQDDSksmiklgNGREVTLHKIVGL 360
                      6666666666666666555443333356666333444456666554...11..12233444555554443322211111114589********* PP

                      HHHHHHHHHHHHHHH CS
  OCD_Mu_crystall 300 aveDvaaaklvyera 314
                      av Dva a +  e +
       CCD26522.1 361 AVMDVALAAVTKEYL 375
                      *******99877765 PP

>> Nsp3_PL2pro  Coronavirus polyprotein cleavage domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.18   1.6e+03      30      46 ..     192     208 ..     185     224 .. 0.88
   2 ?    9.7   0.0   7.7e-05      0.69       9      44 ..     272     306 ..     264     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.18
                  EEEEETTEEEEE-SSSS CS
  Nsp3_PL2pro  30 eflkrGdkivyhtlesp 46 
                  ef kr  k +y    sp
   CCD26522.1 192 EFKKRMSKAMYSMTGSP 208
                  899*****999988888 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 7.7e-05
                  HHHHTEETTEE----EETTEEEEEEETTEEEEE-SS CS
  Nsp3_PL2pro   9 vslaGsyrdwsysGqrtelGveflkrGdkivyhtle 44 
                  +sl Gsyr  s      el  ef k+G ki+  + e
   CCD26522.1 272 ISLIGSYRP-SMHECDNELIQEFQKQGVKIIVDSKE 306
                  8*******8.6666779*************976554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       754  (0.0420548); expected 358.6 (0.02)
Passed bias filter:                      513  (0.0286129); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2795.36
//
Query:       CCD26523.1  [L=868]
Description: hypothetical protein NDAI_0H03500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
  ------ inclusion threshold ------
      0.023   14.8   0.0      0.023   14.8   0.0    3.8  4  SH3BGR        SH3-binding, glutamic acid-rich protein
       0.12   12.6   0.0       0.79   10.0   0.0    2.5  2  Glutaredoxin  Glutaredoxin
       0.26   10.7   0.0       0.26   10.7   0.0    3.1  3  Arf           ADP-ribosylation factor family


Domain annotation for each model (and alignments):
>> SH3BGR  SH3-binding, glutamic acid-rich protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   2.0      0.26   1.6e+03      13      49 ..      42      79 ..      28     116 .. 0.70
   2 ?   -2.0   0.4       0.7   4.2e+03      42      74 ..     423     459 ..     415     482 .. 0.55
   3 ?   -4.1   0.1         3   1.8e+04      39      55 ..     531     547 ..     527     557 .. 0.56
   4 ?   14.8   0.0   3.8e-06     0.023       4      95 ..     780     863 ..     777     866 .. 0.85

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 0.26
                SHHHHHHHHHHHHHHHHTT--EEEEETTT.-HHHHHHH CS
      SH3BGR 13 skeikkkqqevlriLdakkiefdevDitk.deeerelm 49
                +k+ik+k+++vl+   a+  e de+  ++ +++++++ 
  CCD26523.1 42 KKKIKRKKKKVLKESTAEAAELDEIVNANkENDNKKIT 79
                57788888888888888888888876665244444443 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.7
                 -HHHHHHHHHCS...T-CCCS-SS.SS--S-EEEETT CS
      SH3BGR  42 deeerelmrena...apeekkpen.gkplPPqifned 74 
                 +e++re +   +    pe++  ++  +  PPq ++++
  CCD26523.1 423 KESHRENIDTMVsstEPEKQAVSSlIHLNPPQHLENE 459
                 4444544444441102222222221234577766554 PP

  == domain 3  score: -4.1 bits;  conditional E-value: 3
                 TTT-HHHHHHHHHCST- CS
      SH3BGR  39 itkdeeerelmrenaap 55 
                 i+++ e++e++ en a 
  CCD26523.1 531 IASEREKKEELIENKAE 547
                 45555666666555532 PP

  == domain 4  score: 14.8 bits;  conditional E-value: 3.8e-06
                 EEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHCST-CCCS-SSSS--S-EEEETTEEEEEHHHHHHHHTTT-HHHH CS
      SH3BGR   4 kvyvasssgskeikkkqqevlriLdakkiefdevDitkdeeerelmrenaapeekkpengkplPPqifnedeYcGDydaffeakeentleef 95 
                  ++ + + g   +  + ++ ++iL a+++ef   D+ +d+e r++ r           +g++lP  +   d+ +G++++ +ea+e   l+  
  CCD26523.1 780 YIFTSLAGGGFHMIPRTNRLTTILTANRVEFTYRDLGTDDEARKVWRTY--------GKGRSLPGVVRGRDDIIGNWEEIDEANEDYRLHDL 863
                 566666677777778999**************************99933........47999***9999****************8777655 PP

>> Glutaredoxin  Glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1         2   1.2e+04      28      42 ..     559     573 ..     556     576 .. 0.80
   2 ?   10.0   0.0   0.00013      0.79      13      54 ..     797     838 ..     779     844 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2
                   EEEGCCSHHHHHHHH CS
  Glutaredoxin  28 eidvdkdeeireelk 42 
                     +vd++ee+ ee k
    CCD26523.1 559 STEVDANEEVNEEYK 573
                   568999999999876 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00013
                   HHHHHHHHHTTGGEEEEEGCCSHHHHHHHHHHHTSSSSSEEE CS
  Glutaredoxin  13 kkakrlLkelgvkfeeidvdkdeeireelkelsgvrtvPqvf 54 
                   ++   +L+ ++v+f+++d+  d+e+r+  + + + r++P v+
    CCD26523.1 797 NRLTTILTANRVEFTYRDLGTDDEARKVWRTYGKGRSLPGVV 838
                   677889**************************9779999887 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.4      0.73   4.3e+03     101     162 ..     259     327 ..     257     334 .. 0.61
   2 ?   -2.0   2.2      0.35   2.1e+03     100     174 ..     426     502 ..     417     503 .. 0.78
   3 ?   10.7   0.0   4.4e-05      0.26      43      78 ..     793     828 ..     784     835 .. 0.85

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 0.73
                 HHHHHHHCTSGCCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGG....SS...SSSSEEEEEEBTTTTB CS
         Arf 101 keeLkalleeeelkevallvlaNKqDlpealseeelrellglee....lk...gkrkleiqkcsavkge 162
                 ke L+ + eeee k+  l+ ++  ++ +e+ s++e r+++ +++     k   gk kl++ ++s v+++
  CCD26523.1 259 KETLHDIHEEEEEKDKELINISPDIEGTESNSNTEDRTTVVVDQeekeKKkeeGKDKLHLENSSSVTND 327
                 567778888888888777777777777777776666666555543333113446666666666666665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.35
                 HHHHHHHHCTSG..CCTTSEEEEEEE-TTSTTSS-HHHHHHHTTGGGSSSSSSEEEEEEBTTTTBTHHHHHHHHHHH CS
         Arf 100 akeeLkalleee..elkevallvlaNKqDlpealseeelrellgleelkgkrkleiqkcsavkgeglkeglewlses 174
                  +e++++++++   e + v  l+  N     e  +eee +e+ + ee kgk+k e +++s  ++++l+++ ++l e+
  CCD26523.1 426 HRENIDTMVSSTepEKQAVSSLIHLNPPQHLENEEEEEEEEEEEEEEKKGKEKEETVNVSEDNKSKLEKTTDKLEEQ 502
                 56777888865511556888999999877777778888888888888888999999999999999999999999876 PP

  == domain 3  score: 10.7 bits;  conditional E-value: 4.4e-05
                 SSSSSEEEEEEEETTEEEEEEEE-SSGGGGGGGGGG CS
         Arf  43 vPTigfnveeleiknlkftvwDvGGqeklRplWknY 78 
                 +P +   +  l+ + ++ft  D+G  +++R++W++Y
  CCD26523.1 793 IPRTNRLTTILTANRVEFTYRDLGTDDEARKVWRTY 828
                 555555666788999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2503  (0.139606); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        98  (0.005466); expected 17.9 (0.001)
Passed Fwd filter:                        33  (0.00184059); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.32u 0.36s 00:00:01.68 Elapsed: 00:00:00.53
# Mc/sec: 4915.92
//
Query:       CCD26524.1  [L=712]
Description: hypothetical protein NDAI_0H03510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
          0 1140.4   0.0          0 1140.2   0.0    1.0  1  Glycogen_syn     Glycogen synthase
    4.6e-08   32.8   0.0    5.3e-05   22.8   0.0    2.4  2  Glycos_transf_1  Glycosyl transferases group 1
    2.8e-07   31.1   0.0     0.0016   18.9   0.0    2.6  2  Glyco_trans_1_4  Glycosyl transferases group 1
    5.4e-05   23.3   0.4    0.00015   21.8   0.4    1.7  1  Glyco_transf_4   Glycosyltransferase Family 4
    0.00025   21.5   0.1    0.00061   20.3   0.1    1.7  1  Glyco_trans_4_4  Glycosyl transferase 4-like domain
    0.00043   20.1   0.2     0.0011   18.7   0.2    1.6  1  Glyco_transf_5   Starch synthase catalytic domain


Domain annotation for each model (and alignments):
>> Glycogen_syn  Glycogen synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1140.2   0.0         0         0       1     637 [.      12     683 ..      12     684 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1140.2 bits;  conditional E-value: 0
                   EEETTTTS-SSCHHHHHHHHHHHHHHHHGGGEEEEEE--TTGGGGTEEE----SHH........HHHHHHHHGGGT--EEEEEESSTT--EEEEE-G CS
  Glycogen_syn   1 evawevankvGGiytvlkskakvtteelGdnytllGplkeqkarteveeleaenea........lkkalkslrekGvkvlyGrwlieGapkvilfdl 89 
                   e+a+evan+vGGiy+vlkska++t++++ +ny+llGpl++++++ e+e+l++++e+        ++++l+sl++kG+++++GrwlieG+pkv+l+dl
    CCD26524.1  12 EIATEVANRVGGIYSVLKSKAPITVAQYKENYMLLGPLNKATYQNEIEQLDWTSEEafsgdlkpIQDTLHSLQSKGFNFVFGRWLIEGSPKVLLIDL 108
                   89***************************************************9999**************************************** PP

                   GGGSTTHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHCT----EEEEEEETGGGHHHHHHHHHTT-SEEEEEEESS-HHHHHHHHTT CS
  Glycogen_syn  90 dsaavkldewkaelwekvkigipeedretndaiilGflvalflkefreleekkavvahfhewlaGvgliltrkrkldvatvftthatllGrylcaga 186
                   ds ++ l+ewka+lw+ v+i++pe+d etndai+lG+ v++fl+e+++l++k+a++ahfhewlaGv+l+l+rk+++dv+t+ftthatllGrylca++
    CCD26524.1 109 DSIRWRLNEWKADLWSLVGIPSPEYDSETNDAILLGYAVVWFLGELTQLDHKHAIIAHFHEWLAGVALPLCRKKRIDVVTIFTTHATLLGRYLCAAG 205
                   **********************************************************************************************987 PP

                   .---TTSTTS--HHHHHHHTT-HHHHHHHHHHHHHSSEEEESSHHHHHHHHHHSS---SEE----B-GGGT--TTTHHHHHHHHHHHHHHHHHHHTT CS
  Glycogen_syn 187 .vdfynnldkfdvdkeaGkrqiyhrycleraaahtadvfttvseitaleaehllkrkpdvvlpnGlnvkkfsalhefqnlhalkkekindfvrGhfy 282
                    vdfynnl +fdvd+eaGkr+iyhryc+eraaahtadvfttvs+ita+eaehllkrkpd++lpnGlnv+kf+a+hefqnlhalkkekin+fvrGhf+
    CCD26524.1 206 dVDFYNNLANFDVDQEAGKRGIYHRYCIERAAAHTADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVVKFQAVHEFQNLHALKKEKINEFVRGHFH 302
                   7************************************************************************************************ PP

                   T---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHC---T-EEEEEEE----EECB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT CS
  Glycogen_syn 283 GhldfdldktlyffiaGryefsnkGadifieslarlnyllkvekskktvvaflilpaktnsfnvealkgqavvkqlkdtvdevkekvGkrlfekllk 379
                   G++dfdld+tlyffiaGrye++nkGad+fie+larlny+lkv++sk+tvvaf+i+paktnsf+vealk+qavvk+l++tvdev++++Gkr+fe++++
    CCD26524.1 303 GCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVAGSKMTVVAFIIMPAKTNSFTVEALKSQAVVKSLENTVDEVTKNIGKRIFEHAMR 399
                   ************************************************************************************************* PP

                   .......T---.-GGGSS-HHHHHHHHHHHHHC--..-S---SBSBEES.-TT-HHHHHHHHTT-S--TT-SEEEEEE-S---TTSSSS---HHHHH CS
  Glycogen_syn 380 .......gelp.eadellkkedkvllkrailalkr..eslppvvthnmiddaedpilesirrvklfnkssdrvkvvfhpeflsstspllgldyeefv 466
                           e+p + +ellk +d+vllkr++l l+r   +lppvvthnm+dda+dpil++ir+v+lfn++sdrvkv+fhpefl++++p+lgldy+efv
    CCD26524.1 400 fphmgitSEIPtDLNELLKPSDNVLLKRRVLGLRRadGQLPPVVTHNMVDDANDPILNQIRHVQLFNNTSDRVKVIFHPEFLNANNPILGLDYDEFV 496
                   766655445**99**********************7779********************************************************** PP

                   HH-SEEE---SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHHH-T..TGGGGTEEEE--SSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHH CS
  Glycogen_syn 467 rGchlGvfpsyyepwGytpaectvmGipsvttnlsGfGcfmeelie..dakdyGiyivdrrfkslddsveqlaqflyefvkksrrqriiqrnrterl 561
                   rGchlGvfpsyyepwGytpaectvmG+ps+ttnlsGfG++me+lie  +akdyGiyivdrrfk +d+sveql + ++ef+kk+rrqri+qrnrterl
    CCD26524.1 497 RGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNLSGFGAYMEDLIEanQAKDYGIYIVDRRFKNPDESVEQLVDCMEEFCKKTRRQRINQRNRTERL 593
                   *********************************************987899********************************************** PP

                   GGGGBHHHHTHHHHHHHHHHHHHH-TT.....HHHHHHHHT.........TTS-XXX..................XSSXXXXXXXXXXXX CS
  Glycogen_syn 562 sdlldwkrlGlyyvkarklalrraypdkfkeeveelisdee.........lkisrpasvppspsss.....vyltpsdasslqesddedd 637
                   sdlldwkr+Gl+yvkar+lalrraypd+fk+ v e  +d++         lki+rp+svp+sp++      v++tp+d ++lq+++++dd
    CCD26524.1 594 SDLLDWKRMGLEYVKARQLALRRAYPDQFKQLVGEELNDTDmntlaggkkLKIARPLSVPGSPREPrsgstVFMTPGDLGTLQDANNADD 683
                   ********************************9998888877899999999************7544466789**************998 PP

>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00096       2.9      16      54 ..     313     346 ..     306     388 .. 0.75
   2 !   22.8   0.0   1.8e-08   5.3e-05      86     165 ..     492     584 ..     489     591 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.00096
                      EEEEEESS-TTT.TTHHHHHHHHHCCCCCHCSCEEEEEES CS
  Glycos_transf_1  16 kiilsvgrleke.KgvdllikafallkkqlnpnvklviaG 54 
                       +++  gr e++ Kg d +i+a+a+l      n++l +aG
       CCD26524.1 313 LYFFIAGRYEYKnKGADMFIEALARL------NYRLKVAG 346
                      5678889999999***********88......56677777 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 1.8e-08
                      HHHHHHCESEEEEEESSBSS-HHHHHHHHTT--EEEETTTTHCHHCHTTT.............SEEEE-TT.-HHHHHHHHHHHHHSHHHHHHH CS
  Glycos_transf_1  86 leellknadifvlpsisEgfGivllEAmaaglpviasnaggpaevvkdge.............tGllvkpn.naealaeairklledeelrerl 165
                       +e+ + +++ v+ps++E++G ++ E    g+p i++n +g+  + +d               +  ++ p  ++e+l++ ++++ ++  +r+r+
       CCD26524.1 492 YDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNLSGFGAYMEDLIeanqakdygiyivDRRFKNPDeSVEQLVDCMEEFCKKT-RRQRI 584
                      68999*********************************88887777766655567776666663333333346666666666666654.44444 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00042       1.2       5      40 ..     316     348 ..     312     387 .. 0.80
   2 !   18.9   0.0   5.3e-07    0.0016      65     110 ..     491     544 ..     470     574 .. 0.72

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00042
                      EEES--.-GG.GTHHHHHHHHHHHH.HHEEEEEES-- CS
  Glyco_trans_1_4   5 lfvGrl.eenvkgvdllleavpllrkkdvrlvivGdg 40 
                         Gr+ ++n kg+d+++ea+++l    +rl ++G++
       CCD26524.1 316 FIAGRYeYKN-KGADMFIEALARLN---YRLKVAGSK 348
                      5689**5556.*************9...789999954 PP

  == domain 2  score: 18.9 bits;  conditional E-value: 5.3e-07
                      HHHHHHHH-SEEEE--..---SHHHHHHHHTT-EEEE-TGGGTTT--......T CS
  Glyco_trans_1_4  65 dlaellaaadvfvaPs..egfglkllEamaaglpvVatdvggiaevv......g 110
                      d +e+++ +++ v+Ps  e +g++  E   +g+p ++t+++g+ +++      +
       CCD26524.1 491 DYDEFVRGCHLGVFPSyyEPWGYTPAECTVMGVPSITTNLSGFGAYMedlieaN 544
                      678999**********************************88544332222431 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.4     5e-08   0.00015      72     167 ..     160     272 ..     140     275 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 5e-08
  Glyco_transf_4  72 kpDvv.Hahspaalgaallalrr.rlgiplVltvHglye..................krllkarlkplsrllra.lerrllrradrviavSeata 145
                     k  ++ H h + a+ +al  +r+ r ++ +++t H +                       + +  +++ ++ r+ +er +++ ad +++vS+ ta
      CCD26524.1 160 KHAIIaHFHEWLAG-VALPLCRKkRIDVVTIFTTHATLLgrylcaagdvdfynnlanF-DVDQEAGKRGIYHRYcIERAAAHTADVFTTVSQITA 252
                     445566****9886.6777777789***************************999952.444444455555555156777*************** PP

  Glyco_transf_4 146 delrerygvppekitVipnGvD 167
                      e +++++ +p+ i  +pnG +
      CCD26524.1 253 FEAEHLLKRKPDGI--LPNGLN 272
                     *****888777655..999987 PP

>> Glyco_trans_4_4  Glycosyl transferase 4-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   2.1e-07   0.00061      59     146 ..     147     257 ..     109     270 .. 0.64

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 2.1e-07
  Glyco_trans_4_4  59 alralrrllrqrrerpdvvhahsptaglaarlarrrr.giplvvtlh.....................glllrrgsgavrrly.ral.errllr 128
                       ++ l +l + ++ +  + h h+++ag a  l r +r ++  ++t h                     + ++++  + +r +y r + er++++
       CCD26524.1 147 VVWFLGELTQLDHKHAIIAHFHEWLAGVALPLCRKKRiDVVTIFTTHatllgrylcaagdvdfynnlaNFDVDQ-EAGKRGIYhRYCiERAAAH 239
                      33333333344778888888999999998888884444555677788666666666665555554332333445.5667788845557****** PP

  Glyco_trans_4_4 129 radavlvvseaeaeelra 146
                       ad++++vs+  a e++ 
       CCD26524.1 240 TADVFTTVSQITAFEAEH 257
                      *********988866655 PP

>> Glyco_transf_5  Starch synthase catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.2   3.6e-07    0.0011     108     228 ..     133     254 ..     116     262 .. 0.74

  Alignments for each domain:
  == domain 1  score: 18.7 bits;  conditional E-value: 3.6e-07
  Glyco_transf_5 108 yednaerfalfsraalellekl...gwkpdvi.hahDWhtalvpallkelykerglfkkiktvftiHNlayqgrfp.......kdelaalglpae 191
                     y+ +++  +l++ a++ +l +l   + k  +i h h W ++++  l ++ +       ++ t+ft H + + + +        ++  + ++++ +
      CCD26524.1 133 YDSETNDAILLGYAVVWFLGELtqlDHKHAIIaHFHEWLAGVALPLCRKKR------IDVVTIFTTHATLLGRYLCaagdvdfYN--NLANFDVD 219
                     556666777888899888888766666799999**********99999986......359********87777766644321222..22444422 PP

  Glyco_transf_5 192 dfekldglefygkvnflkagivyadavttVSptyakE 228
                     +  +  +   y++    +a+  +ad  ttVS+ +a E
      CCD26524.1 220 Q--EAGKRGIYHRYCIERAAAHTADVFTTVSQITAFE 254
                     2..234444466777778*************988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       543  (0.0302861); expected 358.6 (0.02)
Passed bias filter:                      498  (0.0277762); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.47
# Mc/sec: 4577.47
//
Query:       CCD26525.1  [L=458]
Description: hypothetical protein NDAI_0H03520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-72  242.4   0.0    7.9e-72  241.8   0.0    1.3  1  Pkinase         Protein kinase domain
    3.8e-41  141.1   0.0    5.8e-41  140.5   0.0    1.2  1  Pkinase_Tyr     Protein tyrosine kinase
    0.00077   18.3   0.5     0.0022   16.8   0.0    1.8  2  Pkinase_fungal  Fungal protein kinase
     0.0069   15.7   0.9      0.017   14.5   0.0    2.1  3  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.014   15.6   0.0      0.048   13.8   0.0    1.9  2  ABC1            ABC1 family
      0.053   12.9   0.2       0.14   11.5   0.0    1.7  2  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.8   0.0   2.6e-75   7.9e-72       1     264 []      31     293 ..      31     293 .. 0.93

  Alignments for each domain:
  == domain 1  score: 241.8 bits;  conditional E-value: 2.6e-75
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS--H CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgslse 97 
                 ye  ++lG GsfG V +a++ +++++vAvK++ k+  +++    + + +E++ilkkl+h+niv+++++fe++d+ly+v++++ ggel+d++  +g+++e
  CCD26525.1  31 YEFGKTLGAGSFGIVRQAKRISSNEEVAVKILLKQALRENAIqlRMLYQELSILKKLHHRNIVEFKNWFETDDKLYIVTQLATGGELFDRIIMEGKFTE 129
                 78899***************************999988877667999**************************************************** PP

                 HHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE...EEE-SGTTSEESSSSCS.BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHH CS
     Pkinase  98 eeakkiakqilegleylHskgiiHrDlKpeNiLidekge...lKitDFGlakelesssk.ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyellt 192
                 ++a ki+ qil+++ey+Hsk+i+HrDlKpeN+L+ +k++   l i+DFG+akel+s+++   +  g+  Y+APEvl+ n+++k++D+WslGvi y+ll+
  CCD26525.1 130 DDAVKIIVQILSAVEYIHSKNIVHRDLKPENLLYLTKEKdsqLVIADFGIAKELKSGEElIFKAAGSLGYVAPEVLTVNGHGKPCDIWSLGVITYTLLC 228
                 *********************************985444577****************99999************************************ PP

                 SS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 193 gkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264
                 g   f+     e+ve  ld+   ++   ++++++ p +++is++ak+++ k+l+ +p++R+ta+ell+++++
  CCD26525.1 229 GYSAFK----AETVEGFLDE---CIANDQPVQFQKPYWDNISQSAKNFILKCLDLTPEQRPTATELLKEDWI 293
                 ******....4445567777...333344899**************************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5   0.0   1.9e-44   5.8e-41       2     257 ..      32     289 ..      31     290 .. 0.86

  Alignments for each domain:
  == domain 1  score: 140.5 bits;  conditional E-value: 1.9e-44
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHH...HHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTC CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateee...keelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkke 96 
                  e+gk+lG+G+fG V +++      +++++VavK+l ++a +e+    ++l++e++i+kkl+h+niv++  +   +++l+ivt++++gG+L + +  + 
   CCD26525.1  32 EFGKTLGAGSFGIVRQAKRI----SSNEEVAVKILLKQALRENaiqLRMLYQELSILKKLHHRNIVEFKNWFETDDKLYIVTQLATGGELFDRIIME- 124
                  6899**************99....7888999999966555444343788999******************************************997. PP

                  TTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEEEETTSSTSGGGGS-HHHHHHSEEEHHHHHHHH CS
  Pkinase_Tyr  97 kekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddeyvkkeeaklpvkWmapEslkekkftsksDvWsf 191
                    k+t +d +++++q+ +++ey++sk++vHrdl   N L  +   +++  i+DfG+a+++++ +e     +a  ++ ++apE+l+ +   +  D+Ws 
   CCD26525.1 125 -GKFTEDDAVKIIVQILSAVEYIHSKNIVHRDLKPENLLYLTkekDSQLVIADFGIAKELKSGEELIF--KAAGSLGYVAPEVLTVNGHGKPCDIWSL 219
                  .9************************************975423367999**********77777665..5567789********************* PP

                  HHHHHHHHTTSSGTTTTSHHHHHHHHH.HTTEE..S-BB..TTSBHHHHHHHHHHT-SSGGGS--HHHHHH CS
  Pkinase_Tyr 192 GvllwEiftlgespypglkneevlekl.kegkr..lekp..ekcpeelyelmkkcweedpeeRptfselve 257
                  Gv+++ +++ g s ++  + e +l+    +++    +kp  ++++++ ++++ kc++ +pe+Rpt +el++
   CCD26525.1 220 GVITYTLLC-GYSAFKAETVEGFLDECiANDQPvqFQKPywDNISQSAKNFILKCLDLTPEQRPTATELLK 289
                  ********9.9999999999999887734443322334433688999999***************999875 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   7.5e-07    0.0022     316     396 ..     140     215 ..     123     222 .. 0.84
   2 ?   -1.4   0.4      0.26   7.8e+02     246     265 ..     388     425 ..     308     448 .. 0.52

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 7.5e-07
  Pkinase_fungal 316 IkghrsLflkagiLHrDiSenNilitdskkegerkglLiDLDlakelsddssesgarertGTleFmaievlkgeeHsyrhD 396
                     + + +  +  ++i+HrD   +N+l +  +ke++ + +++D+ +akel+  s e+   +  G l ++a evl ++ H    D
      CCD26525.1 140 LSAVEYIH-SKNIVHRDLKPENLLYL--TKEKDSQLVIADFGIAKELK--SGEELIFKAAGSLGYVAPEVLTVNGHGKPCD 215
                     55556667.99*************99..78889***************..688878999************9988976555 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.26
  Pkinase_fungal 246 qe..................lsskaevklkksesskkv 265
                     ++                   ++++ ++ ++s ++++ 
      CCD26525.1 388 KKrksqlqqrnfaqivrmatNNKEKIISARNSGANTPL 425
                     11222222222223344433223333333333333333 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.5   1.5e+03      18      56 ..      35      74 ..      28     109 .. 0.67
   2 !   14.5   0.0   5.6e-06     0.017     145     253 ..     132     236 ..     107     281 .. 0.78
   3 ?   -4.0   0.1       2.3     7e+03      78      99 ..     372     393 ..     369     405 .. 0.68

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 0.5
  Kinase-like 18 ellkkgdrsvvfevkdqetgeplavkvfllps.easkkdl 56
                 + l+ g +++v ++k    +e++avk+ l ++ +    +l
   CCD26525.1 35 KTLGAGSFGIVRQAKRISSNEEVAVKILLKQAlRENAIQL 74
                 6677788888888888888888888877666544433344 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 5.6e-06
  Kinase-like 145 arlllTlqlirlaanLqakglvhgkftvdnlll...dekgglmlggftaL..vragtkvvl.sevekgfaPpEllgsrggytrknktkmthkldaWql 236
                  a +++ +q++  + ++++k +vh +++++nll+   +++ +l++ +f+     + g++    +    g+  pE+l   g            + d W l
   CCD26525.1 132 AVKII-VQILSAVEYIHSKNIVHRDLKPENLLYltkEKDSQLVIADFGIAkeLKSGEELIFkAAGSLGYVAPEVLTVNGH---------GKPCDIWSL 219
                  44555.899**********************9955445689****9975411566777666566669*******999554.........4589***** PP

  Kinase-like 237 GlviyriwclklPltla 253
                  G+  y + c +  +   
   CCD26525.1 220 GVITYTLLCGYSAFKAE 236
                  ******99987766554 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 2.3
  Kinase-like  78 kdhlrlllpfdlvkiqkkkpfi 99 
                  ++h+r+ +++ l   qkk++ +
   CCD26525.1 372 NNHVRIPMCSQLTPEQKKRKSQ 393
                  5688888888888888777632 PP

>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   0.0   1.6e-05     0.048      17      72 ..      35      91 ..      27     106 .. 0.78
   2 ?   -2.4   0.0       1.7     5e+03      43      73 ..     280     312 ..     266     326 .. 0.70

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 1.6e-05
        ABC1 17 ePiAaASiaqVhrAklk.sgeeVavKvqrpgvkkriksDlellkllakllkkflkel 72
                ++++a+S++ V +Ak   s+eeVavK+   +  ++ +  l++l++ +++lkk+ ++ 
  CCD26525.1 35 KTLGAGSFGIVRQAKRIsSNEEVAVKILLKQALRENAIQLRMLYQELSILKKLHHRN 91
                489***********99978********987777777777777777777777766554 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
        ABC1  43 qrpgvkkriksDlel..lkllakllkkflkelr 73 
                 qrp  ++ +k+D  +  l+++ +ll +f k+++
  CCD26525.1 280 QRPTATELLKEDWITtkLEYTSNLLPSFKKQFD 312
                 678888888888644115566777777777666 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.5   4.4e+03      56      73 ..      75      92 ..      59      98 .. 0.62
   2 ?   11.5   0.0   4.5e-05      0.14     122     166 ..     134     177 ..     107     187 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 1.5
         Kdo 56 travrEfrllkrLeeagv 73
                    +E+++lk+L+++ +
  CCD26525.1 75 RMLYQELSILKKLHHRNI 92
                334578888888877665 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.5e-05
         Kdo 122 allkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDl 166
                 +++ ++  +++ +h+ ++ H+dl + n+l  ++e ++ ++++ D+
  CCD26525.1 134 KIIVQILSAVEYIHSKNIVHRDLKPENLLYLTKE-KDSQLVIADF 177
                 56778888999*****************999997.8999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       850  (0.0474092); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3326.54
//
Query:       CCD26526.1  [L=850]
Description: hypothetical protein NDAI_0H03530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    0.00063   19.2   0.1      0.002   17.6   0.1    2.0  1  WHIM1            WSTF, HB1, Itc1p, MBD9 motif 1
  ------ inclusion threshold ------
      0.041   14.2   0.1       0.13   12.6   0.1    1.8  1  WYL_3            WYL domain
      0.045   13.7   3.2          1    9.3   0.9    3.3  3  Ins_allergen_rp  Insect allergen related repeat, nitrile-spec
        4.5    7.6   8.8       0.27   11.5   0.5    2.6  2  DUF4606          Domain of unknown function (DUF4606)


Domain annotation for each model (and alignments):
>> WHIM1  WSTF, HB1, Itc1p, MBD9 motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.1   4.5e-07     0.002       4      45 ..     463     505 ..     461     506 .. 0.88

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 4.5e-07
                 -GGG-CCCCCSTCCCS-HHHHHHHHHHHHHHHCCC-CCH.HHH CS
       WHIM1   4 dpllpdeLakggYyeLspeeklkiLkiLcdlllsssavR.eei 45 
                 +pl++ eL+k+g  +L p +++ +L++L++++   s ++  ei
  CCD26526.1 463 NPLQSIELEKTGLLALLPKDRIILLRTLINWCIANSNLIhGEI 505
                 6888899**************************9966655777 PP

>> WYL_3  WYL domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.9e-05      0.13       5      42 ..     556     592 ..     554     594 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.9e-05
       WYL_3   5 kaemkkmmkdgvtkedyAkkLgIadkiakaessagale 42 
                 k+ +kk++k+ + +ed+A+kL I ++i++ ++s + l+
  CCD26526.1 556 KKHFKKLIKQRK-NEDFANKLNILNEIKEYRKSHPELQ 592
                 788999999886.579*************999999887 PP

>> Ins_allergen_rp  Insect allergen related repeat, nitrile-specifier detoxification
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1     0.048   2.2e+02      69     100 ..     273     319 ..     243     398 .. 0.73
   2 ?    9.3   0.9   0.00022         1     131     177 ..     553     599 ..     544     601 .. 0.93
   3 ?   -0.4   0.0      0.22   9.7e+02      42      63 ..     720     741 ..     712     800 .. 0.69

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.048
  Ins_allergen_rp  69 ldvyeilnvlndflkasgik...............elvpplve.sase 100
                      +++++++n++n+fl +s+++               elvp+ ++ ++++
       CCD26526.1 273 IKIMSFINKFNRFL-TSDLQnlsfqdfeiglnlypELVPSITPkQQQQ 319
                      67888889999999.777778888888888877765555444432222 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.00022
  Ins_allergen_rp 131 lktskeFakfyealrsdefkklleklmkspevqsllneLrshgidvq 177
                      ++++k F+k++++ ++++f + l+ l + +e+++   eL++++i+++
       CCD26526.1 553 RRQKKHFKKLIKQRKNEDFANKLNILNEIKEYRKSHPELQNKDINIE 599
                      7899*****************************************96 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.22
  Ins_allergen_rp  42 sefkelvqqlealpevkellny 63 
                      + ++e+ +++ +l+e++ell y
       CCD26526.1 720 PYWYEMCHDCNSLKEFIELLSY 741
                      667899999999******9999 PP

>> DUF4606  Domain of unknown function (DUF4606)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   2.3      0.56   2.5e+03      13      75 ..     132     194 ..     126     202 .. 0.82
   2 ?   11.5   0.5   6.1e-05      0.27      42      95 ..     543     597 ..     521     609 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.56
     DUF4606  13 lknlrealkqaseakvHessqCpecqkkkaelaqkaFlrqkktllesallkekleehlytkds 75 
                 ++    ++k   +ak   +++  + + k +e ++++  ++k+++  +   k k+e++  +++ 
  CCD26526.1 132 VQDSVRKPKAKPKAKAKPKKKVTKVKAKNGETTKTDATKKKNNTTIKSKGKGKIEKKSTKNQK 194
                 666677888888999999999999999********9999999988888888888887766655 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.1e-05
     DUF4606  42 aelaqkaF.lrqkktllesallkekleehlytkdsltligeihrslPrlsddpke 95 
                  +l++k F +r++k++ ++++ + k e+   + ++l +i+e  +s P l++   +
  CCD26526.1 543 CALVEKRFdIRRQKKHFKKLIKQRKNEDFANKLNILNEIKEYRKSHPELQNKDIN 597
                 567788887899999999999999999999999***************9976544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2132  (0.118913); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        60  (0.00334653); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.82u 0.30s 00:00:01.11 Elapsed: 00:00:00.47
# Mc/sec: 5465.72
//
Query:       CCD26527.1  [L=175]
Description: hypothetical protein NDAI_0H03540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-35  121.8  18.2    5.6e-35  120.8  18.2    1.5  1  DUF1690   Protein of Unknown function (DUF1690)
  ------ inclusion threshold ------
       0.46   10.2  12.4       0.58    9.9  12.4    1.1  1  DUF445    Protein of unknown function (DUF445)


Domain annotation for each model (and alignments):
>> DUF1690  Protein of Unknown function (DUF1690)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.8  18.2   6.2e-39   5.6e-35       3     139 .]      21     172 ..      18     172 .. 0.96

  Alignments for each domain:
  == domain 1  score: 120.8 bits;  conditional E-value: 6.2e-39
     DUF1690   3 petpiqfSqslvsqLessketdasraqalekliqerVaeeLkkLraeeeetlkkfeeklekellkde................adakdelsskalneki 85 
                 ++ ++++S++++++L+ sk++d  r++++ek+++e+V+++L++L   e++tlkkfe++l+ +ll+d+                a+ k+ +ssk+l++ki
  CCD26527.1  21 SNIQLNLSDTILNELQMSKNNDLIRKHNAEKFVEEKVNDRLNEL---ENDTLKKFENELNLSLLPDDdhdnnnnnenaiaskdAEGKEIKSSKNLDDKI 116
                 4789****************************************...*******************99*************998899************ PP

     DUF1690  86 eeLrkkleefkkkeeekl..peeveeareevveClrenkgkpLdCweeveeFkkev 139
                 ++L++++++f+ ++ +kl  ++e++e+re++ +Cl++n+gkpL+C++e+e+Fkk+v
  CCD26527.1 117 NKLNERINQFEMMKINKLenNSELSEIRESLKNCLLQNEGKPLNCYQEMEQFKKLV 172
                 *************999888799999*****************************98 PP

>> DUF445  Protein of unknown function (DUF445)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  12.4   6.5e-05      0.58     114     265 ..      12     157 ..       3     173 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 6.5e-05
      DUF445 114 kkkleevipepllgkllellleeerhkkllddlldriknllkdeevkekikelidelieeesgklvlesivsmflreltsilekvksdpdhllreeedk 212
                 kk ++++ +++++ +l +++l+e +  k +d + +   + + +e+v+++++el ++++++ +++l l  + +  +++ ++  + + s+ ++  + + +k
  CCD26527.1  12 KKNVQTFTNSNIQLNLSDTILNELQMSKNNDLIRKHNAEKFVEEKVNDRLNELENDTLKKFENELNLSLLPDDDHDNNNNNENAIASKDAEGKEIKSSK 110
                 57788999999999999999999999999999999999**********************988888888888888888888888888888888888888 PP

      DUF445 213 kvreliadllndpelaakveklkkkklsdlevqeyeealwealkdlllkdlne 265
                 ++ + i++l +      +++++ + k+++le++  ++++ e+lk++ll++  +
  CCD26527.1 111 NLDDKINKLNE------RINQFEMMKINKLENNSELSEIRESLKNCLLQNEGK 157
                 87777777766......9****************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2078  (0.115902); expected 358.6 (0.02)
Passed bias filter:                      340  (0.0189637); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.22s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 1333.55
//
Query:       CCD26528.1  [L=502]
Description: hypothetical protein NDAI_0H03550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.4e-50  170.3   5.5    6.9e-50  169.9   5.5    1.1  1  UCH          Ubiquitin carboxyl-terminal hydrolase
    6.5e-10   39.1  12.5    1.4e-08   34.7  12.5    2.3  1  UCH_1        Ubiquitin carboxyl-terminal hydrolase
    0.00013   21.7   0.0    0.00035   20.3   0.0    1.8  1  ubiquitin    Ubiquitin family
  ------ inclusion threshold ------
       0.08   13.3   0.1       0.25   11.7   0.1    1.9  1  Uteroglobin  Uteroglobin family


Domain annotation for each model (and alignments):
>> UCH  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.9   5.5   1.5e-53   6.9e-50       2     257 .]     112     497 ..     111     497 .. 0.87

  Alignments for each domain:
  == domain 1  score: 169.9 bits;  conditional E-value: 1.5e-53
                 EES-SSSTHHHHHHHHHHHTSHHHHHHHHTCHHCCSSTCCCCC-.TT.TTS.TTHHHHHHHHHHHHHHSH-CCEE--HHHHHHHHHHSGGGT....... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....... RF
         UCH   2 GlsNlGntCymnsvlQcLfsipelrdyllsleevkkesrnkkelnesnplgkkgelakalkdlfkellkskskavsPkklkktlsklaksfs....... 93 
                 G++N+GntCymn++lQ+L+ ++ +r+++l++++ ++ s+++ e       +++++++ ++k++f++l k++ k+v P +l+++l+k +++f+       
  CCD26528.1 112 GFQNMGNTCYMNATLQALYRTDDIRQMILDYKPPAQSSTYNPED------EMHHKIVLEIKRCFENLEKKNFKSVMPMMLLTVLRKCYPQFAerdprgg 204
                 9*****************************99999999888664......57788*************99****************************9 PP

                 SSSTCEHHHHHHHHHHHHHHHHCC...........................HCCCHHHHHHCCCTTSHHHHHH-EEEEE.................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...........................xxxxxxxxxxxxxxxxxxxxxxxxxxxx.................... RF
         UCH  94 gykqqDaqEflaflLdqlhedlnr...........................evaeekwkkhlkrndslitdlfegqlks.................... 145
                  ykqqDa+E++++l+++++  + +                           +                          +                    
  CCD26528.1 205 FYKQQDAEELFTQLFHTFSIVFGDkfsndftilfkttikdtnneddvqiktD--------------------------Endlklqchissstnfmkngl 277
                 9*********************997777777777776666655544443221..........................133333333333334444455 PP

                 .......................EEEEEEB-SEEEEEEESEEETEE...EEE--SEEB--SEEE-GGGBSS-BTTS-TCS-B................. CS
                 .......................xxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx................. RF
         UCH 146 .......................klklkrlPeiLiihlkRfsynss...ksKlntkvefpeeldlssylaeekkkkteekkk................. 201
                                          ++++lP++L++++ Rf++++s   ksK+ +kv fp +ldls +l+ e ++++ +  +                 
  CCD26528.1 278 iesmhesiekrseitgvnstysvDKQITKLPKFLTVQYVRFYWKRStgkKSKILRKVVFPFQLDLSDMLTPEYQQEKIKV-Rdamrqveknklekerel 375
                 5666669****************9*******************9999*******************88886655554444.358999999999999999 PP

                 .........................................................EEEEEEEEEES.CTTSEEEEEEEE.CTTTTEEEEEETTEEEE CS
                 .........................................................xxxxxxxxxxx.xxxxxxxxxxxx.xxxxxxxxxxxxxxxxx RF
         UCH 202 .........................................................YeLiavvvHsG.slssGHYvayik.nekngkWykydDetvke 241
                                                                          Y+Li+++ H+G +++sGHY a+++ +++++kWyk++D++v+ 
  CCD26528.1 376 kkrklsptarstnelmtpreeaetekaieesekeywlneyakcfpkdlrqgenpscvYNLIGIITHQGaNSESGHYQAFMRdENDENKWYKFNDDKVTV 474
                 99****************************************************************************9996677888*********** PP

                 E-HHCCCTT........CEEEEEE CS
                 xxxxxxxxx........xxxxxxx RF
         UCH 242 vkeeeevls........sayiLfY 257
                 v++e +++         sa iL+Y
  CCD26528.1 475 VEKE-KIEAlagggesdSALILMY 497
                 **87.888889999999******9 PP

>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7  12.5   3.2e-12   1.4e-08       2     319 ..     112     471 ..     111     472 .. 0.50

  Alignments for each domain:
  == domain 1  score: 34.7 bits;  conditional E-value: 3.2e-12
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.......xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxxxxxxxxxxxxxx RF
       UCH_1   2 GLEnhivnsYlNslLQvlyfipplrnlal.......shlak.eckkehcLlcElgflfdmldkakglncqasnFlrals....sipeasalglileeee 88 
                 G  n  +++Y+N+ LQ+ly +  +r+++l       s++ + e++  h+++ E    f+ l+k++ +++    +l+ l+    ++ e +  g + ++  
  CCD26528.1 112 GFQNMGNTCYMNATLQALYRTDDIRQMILdykppaqSSTYNpEDEMHHKIVLEIKRCFENLEKKNFKSVMPMMLLTVLRkcypQFAERDPRGGFYKQ-- 208
                 6778899**************99999877222222123333355555********************************766644444444433222.. PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
       UCH_1  89 etekssaislssliqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyPkpsnekkeakvtf.asilkss 186
                    +++++ +++l  +f  ++ d+++++++   k              t++++t++  + + ++ +++  l + ++     +      ++f ++ l +s
  CCD26528.1 209 ---QDAEELFTQLFHTFSIVFGDKFSNDFTILFK--------------TTIKDTNNEDDVQIKTDENDLKLQCHISS----S------TNFmKNGLIES 280
                 ...1334456666666666666666666544333..............33333333333333333333333333311....1......11111222222 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...........................................xxxxxx RF
       UCH_1 187 lerekttrawCekCkryqpteqrktvknlPpvLalnakleeeeelelwkt...........................................knwlpl 242
                 +++  +++   e+    ++ +  k++++lP++L+++  ++      +wk+                                           kn l++
  CCD26528.1 281 MHE--SIEKRSEITGVNSTYSVDKQITKLPKFLTVQYVRF------YWKRstgkkskilrkvvfpfqldlsdmltpeyqqekikvrdamrqveKNKLEK 371
                 222..11222233333333444444444444444444432......22222222223333344444444444444444433333333444444222222 PP

                 xxxxxxxxxxxx....................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 243 eiklsldedknl....................................eeklkeerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekeler 305
                 e +l+      +                                    e ++   ++ ++ e+ + vY+L++++ h g ++esgh+ ++ +        
  CCD26528.1 372 ERELK------KrklsptarstnelmtpreeaetekaieesekeywlnEYAKCFPKDLRQGENPSCVYNLIGIITHQGANSESGHYQAFMRD------- 457
                 22221......011122233333333333333444444444444444322222223334567889*************9999*********2....... PP

                 xxxxxxxxxxxxxx RF
       UCH_1 306 dppesqWylFNDfl 319
                 +++e++Wy+FND +
  CCD26528.1 458 ENDENKWYKFNDDK 471
                 23578*******66 PP

>> ubiquitin  Ubiquitin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.8e-08   0.00035       3      70 ..      11      78 ..       9      80 .. 0.87

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.8e-08
                EEETTSEEEEEEEET.TSBHHHHHHHHHHHHTSSGGGEEEEETTEEE-TTSBHGGHTTSTTEEEEEEES CS
   ubiquitin  3 vktldgkkitlevee.sdtveelKekiaekegipaeqqrLiysGkvLedertleeygiqdgstlhlvlr 70
                +k  +gk +++++++ ++t +elK + +e +++p ++q+ + +G + +d+ t  +  i+++st++++ +
  CCD26528.1 11 IK-HQGKLYPISIPSkTTTALELKTQAEELTQVPISRQKYMVKGGLSNDSMTDLDSVIKPNSTIMMLGT 78
                66.478888998876156789*************************9****999999********9876 PP

>> Uteroglobin  Uteroglobin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   5.6e-05      0.25      48      85 ..     150     188 ..     140     192 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 5.6e-05
                  TT---HHHHHH.HHHHHHHHTTS-HHHHHHHHHHHHHHH CS
  Uteroglobin  48 kynpdpeaeea.laelKqcvdklsnetkenvakllekil 85 
                   ynp++e+ +  ++e+K+c+ +l++++ ++v+ ++  ++
   CCD26528.1 150 TYNPEDEMHHKiVLEIKRCFENLEKKNFKSVMPMMLLTV 188
                  79999998764289************9999999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1377  (0.0768029); expected 358.6 (0.02)
Passed bias filter:                      522  (0.0291148); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.57u 0.25s 00:00:00.82 Elapsed: 00:00:00.40
# Mc/sec: 3771.56
//
Query:       CCD26529.1  [L=1012]
Description: hypothetical protein NDAI_0H03560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-98  329.6   0.7    3.9e-97  325.5   0.0    2.1  2  RNB            RNB domain
    2.6e-75  251.1   0.2    1.4e-74  248.8   0.1    2.2  2  Rrp44_CSD1     Rrp44-like cold shock domain
    5.7e-30  103.1   3.3    1.5e-29  101.7   3.3    1.8  1  Rrp44_S1       S1 domain
    4.1e-17   62.0   0.0    1.1e-16   60.6   0.0    1.8  1  OB_Dis3        Dis3-like cold-shock domain 2 (CSD2)
    6.9e-16   58.7   1.2    1.7e-15   57.5   1.2    1.6  1  PIN_4          PIN domain
    8.9e-05   22.6   0.0      0.028   14.6   0.0    3.2  3  CSD2           Cold shock domain
     0.0071   16.9   2.1      0.026   15.0   2.1    2.1  1  PIN_12         PIN domain
  ------ inclusion threshold ------
      0.038   13.7   0.0       0.15   11.7   0.0    2.0  1  OB_RNB         Ribonuclease B OB domain
      0.095   13.0   0.3      0.095   13.0   0.3    2.0  2  Dis3l2_C_term  DIS3-like exonuclease 2 C terminal
       0.29   11.2   1.5         17    5.5   0.0    2.5  2  Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family


Domain annotation for each model (and alignments):
>> RNB  RNB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.048        86     208     271 ..     179     252 ..     136     274 .. 0.68
   2 !  325.5   0.0  2.2e-100   3.9e-97       1     322 [.     542     871 ..     542     874 .. 0.96

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.048
                 xxxxxxxxxxxxxxxxxxxxxxx.........xxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 208 elvArflseleipailriheeps.........nekledliklakklglk..lednsskknlqeslekleeeeaeq 271
                 +++A++l+e +i++il + + ++         n++ e+li+    +++   l+++++ k+l   le ++++e  +
  CCD26529.1 179 QWYANHLKEYGINVILVTNDRLNreaaetttpNKDEEKLITKSL-MQYVdlLPNSEEIKDLIPNLEPTNNQELIK 252
                 679********************777777776444444443333.344444444444445555555554444333 PP

  == domain 2  score: 325.5 bits;  conditional E-value: 2.2e-100
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB   1 RkdlrdllvitIdpedakdlDdAisieklpngnyelgVhIADvshyvkegspldkearkratsvyLpekvvpMLPqelsedlcSLnpgedrlalsvlid 99 
                 Rkdlrd+l+++Idp+++ d+DdA++ +klpngn+e+gVhIADv+h+vk+g++ld e + r+tsvyL +k + MLP  l +dlcSL+p+ dr a+svl++
  CCD26529.1 542 RKDLRDKLICSIDPPGCVDIDDALHAKKLPNGNWEVGVHIADVTHFVKQGTALDAEGASRGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVLWE 640
                 9************************************************************************************************** PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 100 vdekgevlsveiylsvIkskarltydevqdlleqkdekeekktaedLellyelakalrkkRlkkgalefdspeikllldedkgnrielkveeetkahsl 198
                 +d++  + +v++++svIks++ ++y+++q  ++++++   ++ ++ +++l +l+ +l++kRl++gal++ spe+k+++d+++  + e+++++    +sl
  CCD26529.1 641 LDSNADIVKVDFTKSVIKSREAFSYEQAQLRIDDPNQ--TDDLTQGMRALLQLSIKLKQKRLDNGALNLASPEVKVHMDSETSDPGEVEIKKLLATNSL 737
                 ********************************99998..458**************************************************999**** PP

                 xxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxx... RF
         RNB 199 veelmllANelvArfl.seleipailriheepsnekledliklakklglklednsskknlqeslekleeee...aeqllselllrllkeakyssep... 290
                 vee+mllAN  vAr++  +++++a+lr+h +p ++++e l++++ + +    + +s k+l +sl+++e+ +    ++l++ + +r++  a+y+ +    
  CCD26529.1 738 VEEFMLLANISVARKIyDAFPQTAMLRRHAAPPSTNFELLNEMLHRRKNMSISLESSKALADSLDRCEDPKdpyFNTLVRIMSTRCMMAAQYFYSGays 836
                 ****************99********************9999999554445557777799*******9999998999****************777999 PP

                 ...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RNB 291 ...vgHfgLaleeYthfTSPirRYpDlvvhrllka 322
                    ++H+gLa+++YthfTSPirRY D+v hr+l  
  CCD26529.1 837 ypdFKHYGLAVDIYTHFTSPIRRYCDVVAHRQLAG 871
                 999*****************************975 PP

>> Rrp44_CSD1  Rrp44-like cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.8   0.1   7.6e-78   1.4e-74       3     148 .]     262     410 ..     260     410 .. 0.96
   2 ?   -1.3   0.0      0.88   1.6e+03      66      81 ..     510     527 ..     503     532 .. 0.76

  Alignments for each domain:
  == domain 1  score: 248.8 bits;  conditional E-value: 7.6e-78
                 -------HHHHHHHHHTTSEEEEEEEEESSBTTEEEEE-SSSSS-EEEESHHHHTS--TT-EEEEEE--GGG-B---SS-B-CCCSSTT--TT-B--SS CS
  Rrp44_CSD1   3 tfpeyystarvmgglkngvlyqgniqiseynflegsvslprfskpvlivgqknlnrafngdqvivellpqsewkapssivldsehfdvndnpdieagdd 101
                  fpeyystar+mgglkngvlyqgn+qiseynfleg+vslp fskpvlivgqknlnrafngdqvivellp+sewkaps+ivldsehf+vndnpd +  ++
  CCD26529.1 262 IFPEYYSTARIMGGLKNGVLYQGNVQISEYNFLEGTVSLPSFSKPVLIVGQKNLNRAFNGDQVIVELLPESEWKAPSTIVLDSEHFNVNDNPDDDNNEN 360
                 59************************************************************************************************* PP

                 S--SSSSS-SS...--SHHHHHHHHHHHHHHHHHSSSB-BEEEEEEEE-- CS
  Rrp44_CSD1 102 ddnnesssntt...visdkqrrllakdamiaqrskkiqptakvvyiqrrs 148
                  d  e   n t   visdk+rrllak a+ aq+ kk+qpta+vv i rrs
  CCD26529.1 361 ADTTELGINGTsniVISDKDRRLLAKHAIEAQKEKKVQPTARVVAITRRS 410
                 **9998777654559*********************************98 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.88
                 EEEE--G..GG-B---SS CS
  Rrp44_CSD1  66 ivellpq..sewkapssi 81 
                 ++e lp    ewkap+s+
  CCD26529.1 510 VLECLPAegHEWKAPASL 527
                 56777752369****997 PP

>> Rrp44_S1  S1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   3.3   8.6e-33   1.5e-29       2      88 ..     924    1008 ..     923    1009 .. 0.96

  Alignments for each domain:
  == domain 1  score: 101.7 bits;  conditional E-value: 8.6e-33
                  EEEEEEEEEESSEEEEEETTTTEEEEEEHHHCBS-GGG..-EEETTTTEEEEBBTTSSS-EEEETTSEEEEEEEEEE-SSSSSEEEE CS
    Rrp44_S1    2 eeegyvikvfsNGvvvlvprfGiEglirledlaeeeeskeaefdeeeykleveekkkekkvtvelFdkvkVkvksekdestgkrkvk 88  
                   e+gyvikvf+NG+vvlvp+fG+Eglirle+l+++++   a+f+e e+kl++ +k+++k++++ +Fdkv+V+vks+ d +t+krk++
  CCD26529.1  924 VETGYVIKVFNNGIVVLVPKFGVEGLIRLENLTRDTNG--ANFNEVEFKLNFVHKETGKEREIYVFDKVEVQVKSVLDPVTSKRKAE 1008
                  689*****************************988776..*********************************************97 PP

>> OB_Dis3  Dis3-like cold-shock domain 2 (CSD2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   5.9e-20   1.1e-16       2      77 .]     433     500 ..     432     500 .. 0.97

  Alignments for each domain:
  == domain 1  score: 60.6 bits;  conditional E-value: 5.9e-20
                 EEE--SSTTS--EEEETTSSTTTHHHHTTTTTT--EEEEE----TT-SS-EEEEEEE-HHHHHHHHHHHHHHHHTT CS
     OB_Dis3   2 vlfkPldkrlPriliptkelpeeflenpeelegklfvvkidsWsetsryPlGeivksLGeagdieaeteaiLleng 77 
                 v+++ +dk lP+i+i+t+++        ++l +k++v+ idsW+++++yPlG++v+ LG +++ eaetea+Lle++
  CCD26529.1 433 VFVILMDKCLPKIRIRTRRA--------HDLLDKRIVISIDSWPTDQKYPLGHFVRDLGGIETAEAETEALLLEHD 500
                 788889**************........**********************************************96 PP

>> PIN_4  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   1.2   9.4e-19   1.7e-15       1     122 [.      88     207 ..      88     209 .. 0.79

  Alignments for each domain:
  == domain 1  score: 57.5 bits;  conditional E-value: 9.4e-19
       PIN_4   1 fVlDTnvlLhdpealksfkeehdvviPitVleELdklKkgsserelarlarqan...rlldellekesgrlkvqtsaeelpeeeseseknDnrIlaval 96 
                 +VlDTn++L+ +++l++ ++  dv+iP++Vl+E++++      ++l++l+r++    r++  + e ++ +++ ++++e++++      +nD++I +++ 
  CCD26529.1  88 VVLDTNIVLQAIDLLENPDCFFDVIIPQIVLDEVRNKSYPVY-TRLRTLCRDSDdkkRFIVFHNEFNENTFVEREKDESIND------RNDRAIRKTCQ 179
                 69********************************88877777.778888876661115555555544544444444444443......8********** PP

       PIN_4  97 elkeekp..drkvvLvskDinlrikAka 122
                 +++++ +    +v+Lv++D+ +r  A++
  CCD26529.1 180 WYANHLKeyGINVILVTNDRLNREAAET 207
                 *****998889***********999876 PP

>> CSD2  Cold shock domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.029        52      13      37 ..     308     332 ..     299     344 .. 0.74
   2 ?   -2.2   0.0       2.7   4.9e+03       6      34 ..     380     407 ..     376     419 .. 0.64
   3 !   14.6   0.0   1.5e-05     0.028       1      71 [.     434     503 ..     434     504 .. 0.78

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.029
        CSD2  13 ifipkeklkgakdGdkVvveiteyp 37 
                  ++ +++l+ a +Gd V+ve++   
  CCD26529.1 308 LIVGQKNLNRAFNGDQVIVELLPES 332
                 3477999*************98644 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.7
        CSD2   6 dkrlkqdifipkeklkgakdGdkVvveit 34 
                 d+rl  +  i+++k k+++    Vv+ it
  CCD26529.1 380 DRRLLAKHAIEAQKEKKVQPTARVVA-IT 407
                 66666677788788888888777765.34 PP

  == domain 3  score: 14.6 bits;  conditional E-value: 1.5e-05
        CSD2   1 FVvpddkrlkqdifipkeklkgakdGdkVvveiteypdkkn.peGevievLGkkgdpgveilsilakhglpe 71 
                 FV+  dk l+ +i i  ++++++  ++ +v+ i ++p++++ p G+ ++ LG  ++ ++e ++ l +h++++
  CCD26529.1 434 FVILMDKCLP-KIRIRTRRAHDLL-DKRIVISIDSWPTDQKyPLGHFVRDLGGIETAEAETEALLLEHDVEY 503
                 6666677776.4667766666555.4567789*****65445**************************9876 PP

>> PIN_12  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   2.1   1.5e-05     0.026       1     121 [.      88     201 ..      88     226 .. 0.75

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.5e-05
      PIN_12   1 ifiDTnifldeffrlseeealkklleliesgkiklivpdivldEflknrekkiees....kkle.kalkslsklksakkklnekkkllslkeikkkiee 94 
                 +++DTni l+   +l e+           ++ + +i+p+ivldE++++   ++ +     +  + k+ + + + +++++ + e++k +s ++ ++++  
  CCD26529.1  88 VVLDTNIVLQ-AIDLLEN----------PDCFFDVIIPQIVLDEVRNKSYPVYTRLrtlcRDSDdKKRFIVFHNEFNENTFVEREKDESINDRNDRAIR 175
                 7899999996.4444444..........445699********************996677656634444455556666666666666888888888888 PP

      PIN_12  95 kveeslkkllekleaikvipetndevk 121
                 k  + +++ l+++++ +vi  tnd+++
  CCD26529.1 176 KTCQWYANHLKEYGI-NVILVTNDRLN 201
                 88889*******999.88888886543 PP

>> OB_RNB  Ribonuclease B OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.6e-05      0.15      24      44 ..     310     330 ..     303     341 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 8.6e-05
                 E-HHHHTTS-TT-EEEEEEEE CS
      OB_RNB  24 ippeqmkkamhGDrVlvritk 44 
                 + ++++++a++GD+V+v++  
  CCD26529.1 310 VGQKNLNRAFNGDQVIVELLP 330
                 7799*************9977 PP

>> Dis3l2_C_term  DIS3-like exonuclease 2 C terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       5.3   9.5e+03      16      23 ..     108     115 ..     106     118 .. 0.82
   2 ?   13.0   0.3   5.3e-05     0.095       4      74 ..     924     993 ..     922    1006 .. 0.71

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 5.3
  Dis3l2_C_term  16 sfDVlile 23 
                    +fDV+i++
     CCD26529.1 108 FFDVIIPQ 115
                    7*****98 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 5.3e-05
  Dis3l2_C_term   4 eekavVvnVldssfDVlileyGlekRVyldklplk..efefdktkvLtLyWkkdvpeaevvqeeekfssvvkv 74 
                    +e++ V++V ++ + Vl++++G+e  + l++l  +   ++f++++  +L +    +e+  + e+  f++v+++
     CCD26529.1 924 VETGYVIKVFNNGIVVLVPKFGVEGLIRLENLTRDtnGANFNEVE-FKLNFVH--KETGKEREIYVFDKVEVQ 993
                    6899****************************9664477998866.5665511..223444444444444444 PP

>> Lipase_GDSL_3  GDSL-like Lipase/Acylhydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.3     0.023        42      61     156 ..     106     209 ..      90     230 .. 0.67
   2 ?    5.5   0.0    0.0096        17      27      71 ..     890     936 ..     886     957 .. 0.87

  Alignments for each domain:
  == domain 1  score: 4.2 bits;  conditional E-value: 0.023
  Lipase_GDSL_3  61 svfvldllpNasaeeirerleyfvktlr....kahPktpillvedlsttkglvdeklekeveakn.kaleel...vkklkkekekklylisskell 148
                    ++f+  ++p    +e+r++  +++++lr    +   k+  ++ ++ ++++++v+ + ++ +++ n +a++++   +++ +ke   +++l++++ l 
     CCD26529.1 106 DCFFDVIIPQIVLDEVRNKSYPVYTRLRtlcrDSDDKKRFIVFHNEFNENTFVEREKDESINDRNdRAIRKTcqwYANHLKEYGINVILVTNDRLN 201
                    444444566677888888888888887633334455555555555888888888877777665441556655111445557777789999999988 PP

  Lipase_GDSL_3 149 gkdeeatv 156
                    +++ e+t+
     CCD26529.1 202 REAAETTT 209
                    88888876 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0096
  Lipase_GDSL_3  27 ilsrklgrevvnLgfsGnalleaeladvlaevda..svfvldllpNa 71 
                    ++ r+++++  n  f+G+a +e+++ +v+ + +     +v+ ++ N 
     CCD26529.1 890 MICRNINKKHRNAQFAGRASIEYYVGQVMRNNETveTGYVIKVFNNG 936
                    789**************************988877678999999984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       577  (0.0321825); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.43
# Mc/sec: 7023.03
//
Query:       CCD26530.1  [L=755]
Description: hypothetical protein NDAI_0H03570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.9e-47  159.6   0.2    1.9e-22   80.2   0.0    3.0  2  ABC_tran         ABC transporter
      2e-19   69.4  10.5      2e-19   69.4  10.5    2.8  1  ABC_tran_Xtn     ABC transporter
    5.3e-15   56.0  10.4     0.0012   18.7   0.0    5.2  5  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    4.8e-11   42.5   0.0    0.00018   21.0   0.0    3.4  3  SMC_N            RecF/RecN/SMC N terminal domain
    5.2e-07   30.2   0.1      0.036   14.5   0.0    2.8  2  AAA_16           AAA ATPase domain
    5.6e-07   30.2   0.5      0.073   13.6   0.1    3.9  3  AAA_18           AAA domain
    7.8e-07   29.5   1.1      0.045   14.0   0.0    3.1  2  AAA_28           AAA domain
      3e-06   26.9   0.6       0.13   12.1   0.0    2.9  2  AAA_29           P-loop containing region of AAA domain
    3.7e-06   27.0   0.1      0.076   12.9   0.0    2.7  2  RsgA_GTPase      RsgA GTPase
    3.9e-06   26.9   0.0      0.025   14.5   0.0    2.6  2  NACHT            NACHT domain
    8.4e-06   26.1   0.5       0.31   11.3   0.0    3.6  3  AAA_22           AAA domain
    1.7e-05   25.2   0.1      0.092   13.2   0.0    3.7  3  AAA              ATPase family associated with various cellul
    6.3e-05   23.0   1.5       0.11   12.6   0.3    3.1  2  MMR_HSR1         50S ribosome-binding GTPase
    0.00014   21.9   2.8       0.37   10.8   0.0    3.6  2  AAA_14           AAA domain
    0.00016   21.8   0.3       0.31   11.2   0.0    3.0  2  AAA_33           AAA domain
    0.00021   21.0   0.0      0.035   13.8   0.0    2.3  2  ATP-synt_ab      ATP synthase alpha/beta family, nucleotide-b
    0.00026   20.8  25.6      0.028   14.2   0.0    4.6  3  AAA_15           AAA ATPase domain
    0.00027   21.5  28.3       0.14   12.7   0.0    5.2  5  AAA_23           AAA domain
    0.00027   20.7   0.0       0.77    9.4   0.0    2.6  2  AAA_24           AAA domain
    0.00029   20.6   0.0        2.1    8.0   0.0    3.8  4  AAA_30           AAA domain
    0.00034   20.4   0.1       0.31   10.8   0.0    2.8  2  PduV-EutP        Ethanolamine utilisation - propanediol utili
    0.00052   20.4   0.6       0.63   10.5   0.0    3.2  2  RNA_helicase     RNA helicase
     0.0009   18.5   0.2       0.55    9.4   0.0    3.0  3  NB-ARC           NB-ARC domain
     0.0011   18.3   0.7       0.28   10.5   0.0    2.9  2  Zeta_toxin       Zeta toxin
     0.0011   18.9   0.0       0.34   10.8   0.0    2.6  2  NTPase_1         NTPase
     0.0011   19.1   0.1        1.7    8.9   0.0    2.6  2  Roc              Ras of Complex, Roc, domain of DAPkinase
     0.0012   18.4   0.0       0.42   10.1   0.0    2.5  2  AAA_7            P-loop containing dynein motor region
     0.0019   17.3   0.0       0.33    9.9   0.0    2.6  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
     0.0025   17.8   0.0       0.59   10.1   0.0    2.7  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
     0.0026   17.7   0.8     0.0026   17.7   0.8    2.4  1  Blo-t-5          Mite allergen Blo t 5
     0.0034   17.4   1.2        4.2    7.4   0.0    3.2  3  AAA_5            AAA domain (dynein-related subfamily)
     0.0039   17.3   3.0       0.25   11.4   0.0    3.6  3  Dynamin_N        Dynamin family
     0.0054   15.9   0.1        3.2    6.8   0.0    2.5  2  DUF815           Protein of unknown function (DUF815)
     0.0058   15.8   3.9       0.58    9.2   0.0    3.1  3  G-alpha          G-protein alpha subunit
  ------ inclusion threshold ------
       0.01   15.7   0.0       0.22   11.4   0.0    2.4  2  MobB             Molybdopterin guanine dinucleotide synthesis
      0.012   15.1   0.0        1.2    8.7   0.0    2.6  2  AAA_25           AAA domain
      0.015   14.6   0.4        4.5    6.5   0.0    2.7  2  Septin           Septin
      0.019   14.5   0.0        7.7    6.0   0.0    2.7  2  FeoB_N           Ferrous iron transport protein B
      0.025   14.2   0.1        2.4    7.7   0.0    2.9  2  SRP54            SRP54-type protein, GTPase domain
      0.045   13.7   0.0        1.1    9.2   0.0    2.5  2  Rad17            Rad17 P-loop domain
      0.045   13.2   0.5       0.76    9.2   0.0    2.7  3  Pox_A32          Poxvirus A32 protein
      0.054   13.1   0.1        5.7    6.5   0.1    2.5  2  cobW             CobW/HypB/UreG, nucleotide-binding domain
      0.062   12.7   0.1        0.7    9.3   0.0    2.4  2  Arf              ADP-ribosylation factor family
      0.072   12.3   7.6       0.27   10.5   0.0    4.0  4  DUF2813          Protein of unknown function (DUF2813)
       0.11   12.2   0.0        3.5    7.3   0.0    2.5  2  Viral_helicase1  Viral (Superfamily 1) RNA helicase
       0.15   11.4   0.5        2.2    7.6   0.0    2.5  2  FtsK_SpoIIIE     FtsK/SpoIIIE family
       0.15   11.6   2.2        8.4    6.0   0.0    3.1  3  Ras              Ras family
       0.15   12.5   5.4         12    6.4   0.0    3.9  3  AAA_17           AAA domain
        0.3   11.0   9.3       0.52   10.2   0.0    3.1  2  ATPase_2         ATPase domain predominantly from Archaea
       0.75    9.8   0.0       0.75    9.8   0.0    5.1  5  DUF87            Helicase HerA, central domain


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.1   9.5e-24   3.4e-21       1     137 []     218     399 ..     218     399 .. 0.73
   2 !   80.2   0.0   5.3e-25   1.9e-22       1     137 []     551     682 ..     551     682 .. 0.82

  Alignments for each domain:
  == domain 1  score: 76.2 bits;  conditional E-value: 9.5e-24
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEET..TCEGGGB-HHHCCHCEEEE-SS--S-TTSB.HHHH................. CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx................. RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilld..gkdlkeqeleslrkeigvlpqepqlfpelt.vren................. 79 
                 l++ +l+l+ g+++++vG+nG GKStLl++l++ + +   ++ +   +++l+ +e++ l++ +      +ql +e t + e+                 
  CCD26530.1 218 LSDAQLTLSFGHRYGLVGQNGIGKSTLLRALSRRELNVPKHVSILhvEQELRGDETKALQSVLDADVWRKQLLSEETkINERlkemdklraefdensle 316
                 57889****************************999877777444235666665555555555443333444444443666677778888888888888 PP

                 ............................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 ............................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  80 ............................esdeeiekalsklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                                             +++++++ +l  lg +    + +++ ++++SgG++ r++laral+++p+llllDEp++
  CCD26530.1 317 vkkldneredldnhliqisekladmesdKAEARAASILYGLGFST---EAQQKATNTFSGGWRMRLSLARALFCQPDLLLLDEPSN 399
                 888888888777777777777777765555555555555555555...5555669*****************************86 PP

  == domain 2  score: 80.2 bits;  conditional E-value: 5.3e-25
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH..........HHHTCHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..........xxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren..........esdeeiekal 89 
                 lk+v+l+++ ++++a+vG nG+GK+tLlk+++++l+pt+G +            +  r +ig+++q++    +lt              +     e+++
  CCD26530.1 551 LKDVNLDVQMDSRIALVGANGCGKTTLLKVMMEELRPTKGFV-----------SRNGRLRIGYFTQHHVDSLDLTKS-AvdwmstaypgKN---DEEYR 634
                 79****************************************...........6778999*******6666666433.2366888844444...55666 PP

                 HHSTTGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  90 sklglkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                 ++lg  +++ +   ++++ LSgGqk+rva a++ l++p +l+lDEp++
  CCD26530.1 635 RHLGSFGITGSLGLQRMQLLSGGQKSRVAFAALCLNNPHILVLDEPSN 682
                 66666665556666677*****************************86 PP

>> ABC_tran_Xtn  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4  10.5   5.5e-22     2e-19       4      83 ..     441     522 ..     439     524 .. 0.91

  Alignments for each domain:
  == domain 1  score: 69.4 bits;  conditional E-value: 5.5e-22
  ABC_tran_Xtn   4 engklteYkG.nYseyleekeerleqqqkayekqqkeikkleefIerfrakakkakqaqsrekaLeklekiekpeek.kpkl 83 
                   +n++l +Y+G ++++++ +keer++++q++ye+q +++k+l+efI+++r++a+k++ aqsr+k+Lekl  +e+pee+ + ++
    CCD26530.1 441 HNERLDYYRGqDFDSFYTTKEERRKTAQREYENQMAYRKHLQEFIDKYRYNAAKSQEAQSRIKKLEKLPVLEPPEEEkTISF 522
                   68899*****66**************************************************************44414455 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   1.5e-05    0.0055       3      20 ..     232     249 ..     231     324 .. 0.84
   2 ?    6.1   0.1     0.023       8.2     246     302 ..     380     430 ..     261     431 .. 0.71
   3 ?   -0.4   0.3       2.2   7.8e+02     138     192 ..     447     513 ..     434     526 .. 0.43
   4 !   17.1   0.0     1e-05    0.0038       3      44 ..     565     600 ..     564     611 .. 0.85
   5 !   18.7   0.0   3.4e-06    0.0012     223     303 .]     640     714 ..     612     714 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.5e-05
      AAA_21   3 vliGpNgsGKSnLLdald 20 
                 +l+G Ng GKS+LL+al+
  CCD26530.1 232 GLVGQNGIGKSTLLRALS 249
                 69***************5 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.023
      AAA_21 246 alltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSplll 302
                  l+ al+  +++ +lll+DEp n L+    ++++ l ++l++  a v+ ++H+  +l
  CCD26530.1 380 SLARALF--CQP-DLLLLDEPSNMLDV---PSIAYLAEYLKTYPATVLTVSHDRAFL 430
                 4444444..555.**************...555555555556667888888886555 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 2.2
      AAA_21 138 lqfgkaltditsrawsllllldglrke............rigllnifadyfgfakekrllqrlvrsl 192
                 +++g+++++++ ++++ ++  +  +++            ++ ++n++++   ++++k+l +  v ++
  CCD26530.1 447 YYRGQDFDSFYTTKEERRKTAQREYENqmayrkhlqefiDKYRYNAAKSQEAQSRIKKLEKLPVLEP 513
                 5555555555555555444444444444443333333333333333333333333333333333333 PP

  == domain 4  score: 17.1 bits;  conditional E-value: 1e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirk 44 
                 +l+G+Ng+GK++LL+ +      + ++++++ + s++g +r+
  CCD26530.1 565 ALVGANGCGKTTLLKVM------MEELRPTKGFVSRNGRLRI 600
                 79**************9......8888888888888887766 PP

  == domain 5  score: 18.7 bits;  conditional E-value: 3.4e-06
      AAA_21 223 flengdgqelparelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                 f   g+ +   +  lS G+k+  a+++++l  +    +l++DEp n+L+ + l  l + lk+ s     v++++H+ +++d
  CCD26530.1 640 FGITGSLGLQRMQLLSGGQKSRVAFAALCLNNP---HILVLDEPSNHLDTSGLDALEDSLKNFSG---GVLMVSHDISIID 714
                 566677778889999****************99...89*************************99...********99987 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.1e-07   0.00018      27     206 ..     231     434 ..     210     444 .. 0.83
   2 !    7.5   0.0    0.0067       2.4      26      42 ..     563     579 ..     550     585 .. 0.79
   3 !    9.6   0.0    0.0015      0.55     135     198 ..     645     709 ..     621     728 .. 0.74

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 5.1e-07
                 EEEEESTTSSHHHHHHHHHHHCTT.TTTTTTCHCCCCCC--BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEEEETTEEE-HHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  27 taivGpNGSGKsnlldAilFvLGersakklrseklsdlihkskekasvkkaeveitfdnedkklkiekeevsisrrvkrkgeseykingkevtkkevse 125
                   +vG+NG GKs ll A+       s ++l   k  +++h ++e +  +   ++ ++d +  + +  +ee++i+ r+k+ ++ + ++++++ + k++ +
  CCD26530.1 231 YGLVGQNGIGKSTLLRAL-------SRRELNVPKHVSILHVEQELRGDETKALQSVLDADVWRKQLLSEETKINERLKEMDKLRAEFDENSLEVKKLDN 322
                 4689**************.......6789***********9666666666677888888888889999999**99999999988888888887777755 PP

                 H...HHCTT-STT..................................CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHC CS
                 x...xxxxxxxxx..................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 126 l...lesagiske..................................lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeks 187
                     l ++ i+++                                  ++SgG +    + L +A   + +  l llDe    LD   ++ +ae+lk+  
  CCD26530.1 323 EredLDNHLIQISekladmesdkaearaasilyglgfsteaqqkatnTFSGGWR----MRLSLARALFCQPDLLLLDEPSNMLDVPSIAYLAEYLKTYP 417
                 322288888988899*************************************87....5566666666667799**********************998 PP

                 TTSEEEEE-SSHHHCCC-S CS
                 xxxxxxxxxxxxxxxxxxx RF
       SMC_N 188 knaQfivislreemlekad 206
                   a ++ +s+++ +l+++ 
  CCD26530.1 418 --ATVLTVSHDRAFLNEVA 434
                 ..999*****999998764 PP

  == domain 2  score: 7.5 bits;  conditional E-value: 0.0067
                 EEEEEESTTSSHHHHHH CS
                 xxxxxxxxxxxxxxxxx RF
       SMC_N  26 ftaivGpNGSGKsnlld 42 
                   a+vG+NG+GK+ ll 
  CCD26530.1 563 RIALVGANGCGKTTLLK 579
                 5689*********9986 PP

  == domain 3  score: 9.6 bits;  conditional E-value: 0.0015
                 T.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SS CS
                 x.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 135 e.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislr 198
                 +       lLSgG+k+ va a        +   + +lDe   +LD +   ++ + lk+ s    ++++s++
  CCD26530.1 645 SlglqrmqLLSGGQKSRVAFAA----LCLNNPHILVLDEPSNHLDTSGLDALEDSLKNFS--GGVLMVSHD 709
                 444444448*******888663....3455556889****************99999988..666666666 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   0.00035      0.12      29     113 ..     233     322 ..     225     357 .. 0.50
   2 !   14.5   0.0   9.9e-05     0.036      26      52 ..     563     599 ..     550     694 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 0.00035
      AAA_16  29 lsGesGvGKsslvrellr.alekd...ggif.....lrgkcdqlesaipysalaqalareellrqllde.....aesaeleawrekleealaavpelag 113
                 l+G+ G+GKs+l+r+l r +l+       i+     lrg+ ++         l ++l+++   +qll+e     ++ +e +  r++++e+  +v++l+ 
  CCD26530.1 233 LVGQNGIGKSTLLRALSRrELNVPkhvS-ILhveqeLRGDETKA--------LQSVLDADVWRKQLLSEetkinERLKEMDKLRAEFDENSLEVKKLDN 322
                 79**************974222222221.112121122222222........44444444445555555333332222223333333333333444444 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 9.9e-05
      AAA_16  26 lvllsGesGvGKsslvrellralekd..........g 52 
                  + l+G+ G+GK++l++  +++l+ +          +
  CCD26530.1 563 RIALVGANGCGKTTLLKVMMEELRPTkgfvsrngrlR 599
                 5789********************9944444444443 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1    0.0002     0.073       3      59 ..     233     305 ..     232     350 .. 0.59
   2 !   10.7   0.0    0.0016      0.59       1      42 [.     564     603 ..     564     638 .. 0.72
   3 ?    0.8   0.0       1.8   6.6e+02      48      85 ..     680     719 ..     650     726 .. 0.86

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 0.0002
      AAA_18   3 ltGtpGvGKttlakeLskrl.gf......................gvnlrdvakenglllevdpe.aldeskrldedkldk 59 
                 l G  G GK+tl ++Ls+r+ ++                      +v   dv+++  l++e   +  l+e +        k
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRElNVpkhvsilhveqelrgdetkalqSVLDADVWRKQLLSEETKINeRLKEMD--------K 305
                 6788999************97888877777777666666666665555555555555555544442222222........2 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.0016
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevd 42 
                 I+l G+ G+GKttl k   ++l      ++v ++++l+++++
  CCD26530.1 564 IALVGANGCGKTTLLKVMMEEL--RPTKGFVSRNGRLRIGYF 603
                 89***************99998..444455555555544444 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 1.8
      AAA_18  48 eskrldedkldklldaleenss..aleegknlvidghlae 85 
                 +s+ ld+  ld+l d l++ s    + +++  +id++ +e
  CCD26530.1 680 PSNHLDTSGLDALEDSLKNFSGgvLMVSHDISIIDSVCNE 719
                 6889999999*********9999999999999***99876 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   0.00013     0.045       4      66 ..     233     296 ..     230     316 .. 0.80
   2 !   13.0   0.0   0.00025     0.091       1      20 [.     563     582 ..     563     600 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 0.00013
      AAA_28   4 itGgestGKTtlleaLaargypvvpEaareileekl.akgedalpwvedllafaervleeqlee 66 
                 ++G  + GK+tll+aL++r+ +v + +    +e++l  ++++al++v d+   ++++l e+ + 
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRELNVPKHVSILHVEQELrGDETKALQSVLDADVWRKQLLSEETKI 296
                 78999*****************999999999988885666778888877777777777666554 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 0.00025
      AAA_28   1 kivitGgestGKTtlleaLa 20 
                 +i+++G+ ++GKTtll+ + 
  CCD26530.1 563 RIALVGANGCGKTTLLKVMM 582
                 79*************98655 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00035      0.13      24      42 ..     230     248 ..     218     256 .. 0.81
   2 !   11.9   0.0   0.00039      0.14      16      45 ..     555     584 ..     550     595 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00035
      AAA_29  24 atlltGpsGsGKSTllDAi 42 
                  + l+G++G GKSTll A+
  CCD26530.1 230 RYGLVGQNGIGKSTLLRAL 248
                 46699***********887 PP

  == domain 2  score: 11.9 bits;  conditional E-value: 0.00039
      AAA_29  16 tieidlkgatlltGpsGsGKSTllDAiqal 45 
                  +++++++ + l+G++G GK+Tll  ++  
  CCD26530.1 555 NLDVQMDSRIALVGANGCGKTTLLKVMMEE 584
                 55666667899************9666655 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00021     0.076     102     123 ..     231     252 ..     197     281 .. 0.81
   2 !   11.1   0.0   0.00076      0.27     100     150 ..     562     614 ..     547     619 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 0.00021
                  EEEECSTTSSHHHHHHHHCTT- CS
  RsgA_GTPase 102 svlvGqSGvGKStLinallpel 123
                    lvGq G+GKStL+ al  ++
   CCD26530.1 231 YGLVGQNGIGKSTLLRALSRRE 252
                  569**************98863 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00076
                  SEEEEECSTTSSHHHHHHHHCTT-----S----..----------SEEEEEET CS
  RsgA_GTPase 100 ktsvlvGqSGvGKStLinallpelelktgevse..klgrGkhTTtavellela 150
                  + ++lvG  G GK+tL++++++el+   g vs+  +l+ G  T  +v  l+l 
   CCD26530.1 562 SRIALVGANGCGKTTLLKVMMEELRPTKGFVSRngRLRIGYFTQHHVDSLDLT 614
                  5679******************9998888888622456677777777776666 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0022      0.81       5      21 ..     233     249 ..     230     299 .. 0.91
   2 !   14.5   0.0   6.9e-05     0.025       2      26 ..     563     587 ..     562     605 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.0022
                 EEC-TTTCHHHHHHHHH CS
       NACHT   5 lqGeaGsGKTtLlqkla 21 
                 l G++G+GK+tLl+ l 
  CCD26530.1 233 LVGQNGIGKSTLLRALS 249
                 78***********9986 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 6.9e-05
                 CEEEEC-TTTCHHHHHHHHHHHHCT CS
       NACHT   2 lvilqGeaGsGKTtLlqklalawae 26 
                  ++l G++G+GKTtLl+ ++++++ 
  CCD26530.1 563 RIALVGANGCGKTTLLKVMMEELRP 587
                 5899**************9999875 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       7.1   2.5e+03      52      71 ..      65      91 ..      50     120 .. 0.57
   2 !   11.3   0.0   0.00088      0.31      10      42 ..     233     261 ..     231     340 .. 0.85
   3 !   10.8   0.1    0.0013      0.46       8      29 ..     564     585 ..     559     713 .. 0.85

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 7.1
      AAA_22 52 sskdllrellralglelka.......e 71
                + ++l++ +l +l  +lk+        
  CCD26530.1 65 KVESLAKSILDQLSTQLKEnqaklelT 91
                555555555555555555522223322 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00088
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaeeerpev 42 
                 ++G+ G+GK+tllr l ++  +++k+    +++
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRELNVPKH----VSI 261
                 79*****************9988774....444 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.0013
      AAA_22   8 lvvtGesGtGKTtllrrlleql 29 
                 ++++G  G+GKTtll+ ++e+l
  CCD26530.1 564 IALVGANGCGKTTLLKVMMEEL 585
                 799*************999998 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       7.9   2.8e+03      14      43 ..     152     177 ..     151     216 .. 0.71
   2 ?    7.4   0.0     0.016       5.8       3      50 ..     233     280 ..     231     337 .. 0.77
   3 !   13.2   0.0   0.00026     0.092       2      27 ..     565     592 ..     564     688 .. 0.74

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 7.9
                 HHHHHHHHHTHEEEEEETTTCSSSSTTHHH CS
         AAA  14 lakavakelgvefleisgsellskyvgese 43 
                 +ak vak  + +f++ ++s+l+++     e
  CCD26530.1 152 IAKKVAKR-NNKFVQYEASKLINQSN---E 177
                 68888888.88899999999996632...2 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.016
                 EESSTTSSHHHHHHHHHHH.HTHEEEEEETTTCSSSSTTHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavake.lgvefleisgsellskyvgesekkirelf 50 
                 l+G  G+GK++l +a+ +  l+v    +s   + +++ g+  k ++ ++
  CCD26530.1 233 LVGQNGIGKSTLLRALSRReLNV-PKHVSILHVEQELRGDETKALQSVL 280
                 89**************9873443.2555555555555666666666555 PP

  == domain 3  score: 13.2 bits;  conditional E-value: 0.00026
                 EEESSTTSSHHHHHHHHHHHHT..HEEE CS
         AAA   2 llyGppGtGKTllakavakelg..vefl 27 
                  l+G  G+GKT+l k +++el     f+
  CCD26530.1 565 ALVGANGCGKTTLLKVMMEELRptKGFV 592
                 699*****************95222233 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.3   0.00029      0.11       2      26 ..     231     255 ..     230     348 .. 0.94
   2 !    8.2   0.0    0.0071       2.6       1      22 [.     563     584 ..     563     598 .. 0.86

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 0.00029
                 EEEEESTTSSHHHHHHHHHTSTEEE CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltgekaiv 26 
                  ++vG+   GKStL++al++++  v
  CCD26530.1 231 YGLVGQNGIGKSTLLRALSRRELNV 255
                 589****************986555 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.0071
                 EEEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge 22 
                 ++a+vG    GK+tL++ +++e
  CCD26530.1 563 RIALVGANGCGKTTLLKVMMEE 584
                 69***************99986 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0031       1.1       7      45 ..     233     271 ..     229     323 .. 0.73
   2 !   10.8   0.0     0.001      0.37       5      27 ..     564     586 ..     561     623 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.0031
      AAA_14   7 itGaRrvGKTtllkqlikellvkkesilyinldderdkk 45 
                 ++G   +GK+tll+ l +++l  ++++  + +++e   +
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRELNVPKHVSILHVEQELRGD 271
                 78999****************666777777777765522 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.001
      AAA_14   5 lvitGaRrvGKTtllkqlikell 27 
                 ++++Ga  +GKTtllk +++el 
  CCD26530.1 564 IALVGANGCGKTTLLKVMMEELR 586
                 6799************9998877 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1     0.013       4.6       4      29 ..     233     260 ..     232     385 .. 0.74
   2 !   11.2   0.0   0.00085      0.31       3      24 ..     565     586 ..     564     619 .. 0.90

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.013
      AAA_33   4 lvGlpGsGKstlaerllkklg..avlls 29 
                 lvG +G GKstl++ l +++     ++s
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRELnvPKHVS 260
                 69*************9765544533333 PP

  == domain 2  score: 11.2 bits;  conditional E-value: 0.00085
      AAA_33   3 llvGlpGsGKstlaerllkklg 24 
                  lvG++G+GK+tl++ ++++l 
  CCD26530.1 565 ALVGANGCGKTTLLKVMMEELR 586
                 68***************99986 PP

>> ATP-synt_ab  ATP synthase alpha/beta family, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   9.7e-05     0.035       1      94 [.     214     357 ..     214     370 .. 0.79
   2 ?    4.9   0.0     0.049        17      15      37 ..     562     584 ..     553     592 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.8 bits;  conditional E-value: 9.7e-05
                  SSHHH.HHHS-EBTT-EEEEEESTTSSHHHHHHHHHHHSSTS.S.EEEEEE...............................ESEEHHHHHHHHHHCH CS
                  xxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x.xxxxxx...............................xxxxxxxxxxxxxxxx RF
  ATP-synt_ab   1 Girvl.DalfpivqGqrtlipgafgvGktvisqslskqsnsd.d.aiiyvg...............................iGergnevaevleefp 64 
                  G+r+l Da +++  G r +++g++g+Gk++++++ls+   +  + ++i+                                 i er +e+ ++  ef 
   CCD26530.1 214 GQRILsDAQLTLSFGHRYGLVGQNGIGKSTLLRALSRRELNVpKhVSILHVeqelrgdetkalqsvldadvwrkqllseetkINERLKEMDKLRAEFD 311
                  6676669999**************************996444433555555899999*************************9999999999999999 PP

                  H................SSGGGGEEEEEEETTS-HHHHHHHHHHHH CS
                  x................xxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  65 e................gtimkrtvlvantsnepvaareasiytgi 94 
                  e                +++++ +  +a   ++ + ar asi+ g+
   CCD26530.1 312 EnslevkkldneredldNHLIQISEKLADMESDKAEARAASILYGL 357
                  9777777777665555444666666666677777777777777776 PP

  == domain 2  score: 4.9 bits;  conditional E-value: 0.049
                  -EEEEEESTTSSHHHHHHHHHHH CS
                  xxxxxxxxxxxxxxxxxxxxxxx RF
  ATP-synt_ab  15 qrtlipgafgvGktvisqslskq 37 
                   r++++ga+g+Gkt++++ ++++
   CCD26530.1 562 SRIALVGANGCGKTTLLKVMMEE 584
                  58999***********9887765 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   7.7   0.00017     0.062      28     301 ..     233     544 ..     216     545 .. 0.64
   2 !   14.2   0.0   7.7e-05     0.028      14      43 ..     551     581 ..     550     591 .. 0.84
   3 ?   -1.3   0.0       3.8   1.4e+03     322     336 ..     670     684 ..     665     700 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 0.00017
      AAA_15  28 liGkNnsGKSsilealdlFlnnkekkn...kkvikiekedleifeniseskdikIdvefaekekakeyektlkskekkkadlllkkkesdlkktikdkk 123
                 l+G N++GKS++l+al       ++ n   +  i   +++l+  e ++    ++ dv+            ++++++++++ ++++k++ ++++    + 
  CCD26530.1 233 LVGQNGIGKSTLLRAL-----SRRELNvpkHVSILHVEQELRGDETKALQSVLDADVWR--------KQLLSEETKINERLKEMDKLRAEFDE----NS 314
                 8***************.....33455566744455555666666566666666666666........22444445555555555555555543....44 PP

      AAA_15 124 lklkknelsdekisvekkkskkelpkekeeklekekeelkid....kedlkklikkleeslkkee............................elknvl 190
                 l++kk ++  e  +++ ++ + +l +++++k+e + +++ +      e ++k  ++++                                    l + l
  CCD26530.1 315 LEVKKLDNEREDLDNHLIQISEKLADMESDKAEARAASILYGlgfsTEAQQKATNTFSGGWRMRLslaralfcqpdlllldepsnmldvpsiaYLAEYL 413
                 444444444444444444444445555555555555544433333388888888888888877779999999999999999999999999998888888 PP

      AAA_15 191 ksaiiklllisakRnvsd....edsekkssllgklkekileealqekl.....eeelteklkeiqeklkeidkklaeelk..kilkkkidkikkfnykg 278
                 k    ++l+ s +R + +    +   + ++ l+    + +++ + +k       ++  e+     + l+e+++k+  +++  ++ ++ i+k++k+ + +
  CCD26530.1 414 KTYPATVLTVSHDRAFLNevatDIIYQHNERLDYYRGQDFDSFYTTKEerrktAQREYENQMAYRKHLQEFIDKYRYNAAksQEAQSRIKKLEKLPVLE 512
                 888888888888888888666644444455555555555555444444554454444445555556666666666444446677888888888888888 PP

      AAA_15 279 kkneeieik.........ddeelplnknGsGv 301
                  ++ee++i+         +   + l ++++G+
  CCD26530.1 513 PPEEEKTISfkfpdceklSPPIIQLQDVSFGY 544
                 88888888888888877777777777777776 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 7.7e-05
      AAA_15  14 lkdveidlsee.ltvliGkNnsGKSsileal 43 
                 lkdv +d++ +    l+G+N++GK+++l+++
  CCD26530.1 551 LKDVNLDVQMDsRIALVGANGCGKTTLLKVM 581
                 667666666666899*************986 PP

  == domain 3  score: -1.3 bits;  conditional E-value: 3.8
      AAA_15 322 eknvilliEEPEahL 336
                 ++++il+++EP +hL
  CCD26530.1 670 NNPHILVLDEPSNHL 684
                 579**********98 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   4.1       1.9   6.8e+02      96     170 ..      83     160 ..      35     188 .. 0.45
   2 !   12.7   0.0   0.00038      0.14      23      39 ..     232     248 ..     212     250 .. 0.83
   3 ?   -0.3   6.2       3.5   1.3e+03     148     194 ..     292     340 ..     257     346 .. 0.46
   4 ?    6.5   1.5      0.03        11     127     190 ..     437     507 ..     411     509 .. 0.60
   5 !   11.3   0.0     0.001      0.36      23      37 ..     565     579 ..     551     582 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 1.9
      AAA_23  96 lskkkgkttkkaklelleideleqfise....llgskkiilnlilflgqer.........feefelkdkkerleelekeleeledekk 170
                 +++ k + t          d+++++++     + +sk++i++ + +lg +            ++e+  ++++l+++e+++ ++ ++++
  CCD26530.1  83 ENQAKLELTG---------DTSKRLLDInilqSHNSKENINTTLNMLGVGGgaddiehagR-KMETRVDLKKLAKAEQKIAKKVAKRN 160
                 1111111111.........222222222111133333334444444444445444444421.22223333344444444444433332 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 0.00038
      AAA_23  23 lItGpNGaGKTTildAi 39 
                  ++G+NG GK+T+l+A+
  CCD26530.1 232 GLVGQNGIGKSTLLRAL 248
                 689*************8 PP

  == domain 3  score: -0.3 bits;  conditional E-value: 3.5
      AAA_23 148 l....kdkkerleelekeleeledekkllekleqekekekeleeleeelee 194
                 +    +++++++++l+ e++e++ e k+l+  +++++  + l ++ e+l +
  CCD26530.1 292 EetkiNERLKEMDKLRAEFDENSLEVKKLD--NEREDLDNHLIQISEKLAD 340
                 111112222233333333333333333333..3334455556666666555 PP

  == domain 4  score: 6.5 bits;  conditional E-value: 0.03
      AAA_23 127 skkiilnlilflgqerfeefel...kdkkerleelekeleeledekkllekl....eqekekekeleelee 190
                 + ++ +++++++  ++f+ f +   +++k + +e+e+++   +  +++++k      + +e + ++++le+
  CCD26530.1 437 IIYQHNERLDYYRGQDFDSFYTtkeERRKTAQREYENQMAYRKHLQEFIDKYrynaAKSQEAQSRIKKLEK 507
                 44556677777777775555443334555566666666666666666666667767556666666666654 PP

  == domain 5  score: 11.3 bits;  conditional E-value: 0.001
      AAA_23  23 lItGpNGaGKTTild 37 
                 +++G NG+GKTT+l 
  CCD26530.1 565 ALVGANGCGKTTLLK 579
                 689**********96 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0022      0.77       4      40 ..     230     270 ..     228     346 .. 0.75
   2 !    8.6   0.0    0.0038       1.4       3      22 ..     562     581 ..     560     624 .. 0.86

  Alignments for each domain:
  == domain 1  score: 9.4 bits;  conditional E-value: 0.0022
      AAA_24   4 kiliyGpsgiGKTtlakel.......gpkplfidtekGlkslda 40 
                 ++ ++G++giGK+tl++ l       ++++ ++ +e+   +l +
  CCD26530.1 230 RYGLVGQNGIGKSTLLRALsrrelnvPKHVSILHVEQ---ELRG 270
                 6789*************99888777777777777776...3333 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0038
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                  +i+++G +g GKTtl+k +
  CCD26530.1 562 SRIALVGANGCGKTTLLKVM 581
                 689*************9987 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       7.9   2.8e+03     105     125 ..      74      94 ..      68      95 .. 0.86
   2 ?    3.5   0.0      0.14        51      22      39 ..     232     249 ..     214     262 .. 0.83
   3 ?    3.8   0.0      0.11        41      57     123 ..     349     424 ..     344     434 .. 0.75
   4 !    8.0   0.0     0.006       2.1      22     108 ..     565     692 ..     557     709 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7.9
      AAA_30 105 laallkaaekagakvilvGDe 125
                 l++l +++++++ak+ l GD+
  CCD26530.1  74 LDQLSTQLKENQAKLELTGDT 94 
                 78999999999*********7 PP

  == domain 2  score: 3.5 bits;  conditional E-value: 0.14
      AAA_30  22 vltGpAGtGKttalkalr 39 
                  l+G  G GK+t+l+al 
  CCD26530.1 232 GLVGQNGIGKSTLLRALS 249
                 589************995 PP

  == domain 3  score: 3.8 bits;  conditional E-value: 0.11
      AAA_30  57 kaAkvLaeelgieastiakllkrlk.........grarlepgtllivDEag.mvdtkqlaallkaaekagakvilvG 123
                 +aA  L  +lg+ ++  +k +++           +ra + + +ll+ DE + m+d  ++a l++ ++++ a+v+ v 
  CCD26530.1 349 RAASILY-GLGFSTEAQQKATNTFSggwrmrlslARALFCQPDLLLLDEPSnMLDVPSIAYLAEYLKTYPATVLTVS 424
                 4444444.6666666666666555566669999866777778*******77488**************999999885 PP

  == domain 4  score: 8.0 bits;  conditional E-value: 0.006
      AAA_30  22 vltGpAGtGKttalkalreaweaa.g...............grviglAptgkaAkvLaeelgieastiakllkrlk....................... 81 
                 +l+G+ G GKtt+lk++ e ++   g               ++v  l  t+ a + +++    ++++ +++ + l+                       
  CCD26530.1 565 ALVGANGCGKTTLLKVMMEELRPTkGfvsrngrlrigyftqHHVDSLDLTKSAVDWMST--AYPGKNDEEYRRHLGsfgitgslglqrmqllsggqksr 661
                 789*************9666655536777776655555555555555555555555552..23333333333222233344444444444455555555 PP

      AAA_30  82 ...grarlepgtllivDEagmv.dtkqlaal 108
                    ++  l++ ++l+ DE +   dt+ l+al
  CCD26530.1 662 vafAALCLNNPHILVLDEPSNHlDTSGLDAL 692
                 6554344455566666665532255555555 PP

>> PduV-EutP  Ethanolamine utilisation - propanediol utilisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.019       6.9       6      33 ..     233     260 ..     229     268 .. 0.84
   2 !   10.8   0.0   0.00087      0.31       2      23 ..     562     583 ..     561     589 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.019
   PduV-EutP   6 liGkvgsGKttLtqalkgeelkYkktqa 33 
                 l+G+ g GK tL +al+ +el+  k  +
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRELNVPKHVS 260
                 89******************98777655 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00087
   PduV-EutP   2 kkilliGkvgsGKttLtqalkg 23 
                 ++i l+G+ g+GKttL + + +
  CCD26530.1 562 SRIALVGANGCGKTTLLKVMME 583
                 6899************998765 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.028        10       3      22 ..     233     252 ..     232     271 .. 0.83
   2 !   10.5   0.0    0.0018      0.63       1      23 [.     564     586 ..     564     616 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.6 bits;  conditional E-value: 0.028
  RNA_helicase   3 lyGpsgeGKStlakeLakal 22 
                   l+G++g+GKStl + L+++ 
    CCD26530.1 233 LVGQNGIGKSTLLRALSRRE 252
                   68************998764 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.0018
  RNA_helicase   1 iwlyGpsgeGKStlakeLakall 23 
                   i l+G++g+GK+tl k ++++l 
    CCD26530.1 564 IALVGANGCGKTTLLKVMMEELR 586
                   5689*************999987 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1       6.7   2.4e+03      62      88 ..      63      89 ..      49     105 .. 0.75
   2 ?    5.6   0.0     0.021       7.7      24      43 ..     232     251 ..     225     332 .. 0.75
   3 !    9.4   0.0    0.0015      0.55      22      43 ..     563     584 ..     550     592 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.7
                XXHHHHHHHXXHHHHHCCCTTSSSS-S CS
      NB-ARC 62 tdkseeiletilkeLslseddleekee 88
                 dk e++ ++il +Ls++ ++ + k e
  CCD26530.1 63 PDKVESLAKSILDQLSTQLKENQAKLE 89
                577889999999999888766665544 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.021
                 EEEESTTSSHHHHHHHHCCS CS
      NB-ARC  24 alvGmgGvGKttlakqilnk 43 
                 +lvG  G+GK+tl++   + 
  CCD26530.1 232 GLVGQNGIGKSTLLRALSRR 251
                 79***********9987776 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.0015
                 EEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC  22 vvalvGmgGvGKttlakqilnk 43 
                  +alvG  G+GKttl+k ++++
  CCD26530.1 563 RIALVGANGCGKTTLLKVMMEE 584
                 489************9988776 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.037        13      21      39 ..     233     251 ..     230     269 .. 0.76
   2 !   10.5   0.0   0.00077      0.28      19      47 ..     564     592 ..     550     596 .. 0.89

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.037
  Zeta_toxin  21 lgGqpGAGKselaellkde 39 
                 l+Gq G GKs+l+++l ++
  CCD26530.1 233 LVGQNGIGKSTLLRALSRR 251
                 89***********998764 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00077
  Zeta_toxin  19 illgGqpGAGKselaellkdelerqgnvv 47 
                 i l+G+ G+GK++l++ + +el++++++v
  CCD26530.1 564 IALVGANGCGKTTLLKVMMEELRPTKGFV 592
                 6799******************9999887 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.043        15       4      77 ..     233     309 ..     230     349 .. 0.59
   2 !   10.8   0.0   0.00094      0.34       1      39 [.     563     597 ..     563     632 .. 0.84

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.043
                 EE--TTSSHHHHHHHHHHHH...GGGEEEEEE.EEE-------EEEEEET.T--EEEEEETT..---SSEETTEEE- CS
    NTPase_1   4 iTGppGvGKtTlvkkvlellkssgvkvgGfyt.eevreggrrigFkivdlasgeegiLarve..akreprvgkyvvd 77 
                 + G+ G+GK+Tl++ +++   +   +v+ + + +e r ++++   ++ d +  +++ L+++   ++r  +++k   +
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRELNVPKHVSILHVeQELRGDETKALQSVLDADVWRKQLLSEETkiNERLKEMDKLRAE 309
                 789**********9987643333333433333145666666666666676555555555555444444444444444 PP

  == domain 2  score: 10.8 bits;  conditional E-value: 0.00094
                 EEEEE--TTSSHHHHHHHHHHHH...GGGEEEEEEEEE- CS
    NTPase_1   1 kvfiTGppGvGKtTlvkkvlellkssgvkvgGfyteevr 39 
                 ++++ G  G GKtTl+k ++e+l     + +Gf+ ++ r
  CCD26530.1 563 RIALVGANGCGKTTLLKVMMEEL----RPTKGFVSRNGR 597
                 58899******************....578999876655 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.012       4.4       4      25 ..     233     254 ..     230     285 .. 0.77
   2 !    8.9   0.0    0.0048       1.7       1      22 [.     563     584 ..     563     594 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.012
                 EESSTTSSHHHHHHCHCT-CCC CS
         Roc   4 lvGdsgvGKtsllkrfvedkfs 25 
                 lvG++g+GK++ll+ + +++ +
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRELN 254
                 8**************9998876 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.0048
                 EEEEESSTTSSHHHHHHCHCT- CS
         Roc   1 KvvlvGdsgvGKtsllkrfved 22 
                 ++ lvG +g GKt+llk ++e+
  CCD26530.1 563 RIALVGANGCGKTTLLKVMMEE 584
                 589**************99976 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.03        11      28      64 ..     223     261 ..     210     288 .. 0.70
   2 !   10.1   0.0    0.0012      0.42      30      61 ..     558     589 ..     553     595 .. 0.85

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.03
       AAA_7  28 lllknkkpvllvGptGtGKtviikd.llkkld.kekyls 64 
                 l l+ ++   lvG+ G GK+++++    ++l+ ++++++
  CCD26530.1 223 LTLSFGHRYGLVGQNGIGKSTLLRAlSRRELNvPKHVSI 261
                 56677788889************9955556664444444 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0012
       AAA_7  30 lknkkpvllvGptGtGKtviikdllkkldkek 61 
                 ++ +  + lvG  G+GKt+++k ++++l ++k
  CCD26530.1 558 VQMDSRIALVGANGCGKTTLLKVMMEELRPTK 589
                 67788999******************998654 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00091      0.33      18      65 ..     217     264 ..     210     269 .. 0.83
   2 ?    4.2   0.0     0.049        18      19      54 ..     551     586 ..     544     592 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.9 bits;  conditional E-value: 0.00091
                 HHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT--EEEEEE CS
        MeaB  18 llerllakaGraqvvGltGvPGaGkstlvealglelrrrGkrvavlav 65 
                 +l+ +  +    ++ Gl G  G Gkstl+ al  +  +  k+v++l v
  CCD26530.1 217 ILSDAQLTLSFGHRYGLVGQNGIGKSTLLRALSRRELNVPKHVSILHV 264
                 55555555566799*******************999999999999887 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.049
                 HHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHH CS
        MeaB  19 lerllakaGraqvvGltGvPGaGkstlvealglelr 54 
                 l+ +  +     ++ l G  G Gk tl++ +++elr
  CCD26530.1 551 LKDVNLDVQMDSRIALVGANGCGKTTLLKVMMEELR 586
                 5555556666789******************99997 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.088        31      19      42 ..     228     251 ..     214     334 .. 0.76
   2 !   10.1   0.0    0.0016      0.59      19      44 ..     561     586 ..     546     614 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.088
                 TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglaka 42 
                 g+   L G+ G GK+tl r+l + 
  CCD26530.1 228 GHRYGLVGQNGIGKSTLLRALSRR 251
                 4457799*************9874 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.0016
                 TEEEEEEESTTSSHHHHHHHHHHHTT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakalg 44 
                  + i+L G  G+GKTtl + ++++l 
  CCD26530.1 561 DSRIALVGANGCGKTTLLKVMMEELR 586
                 4569*****************99985 PP

>> Blo-t-5  Mite allergen Blo t 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.8   7.3e-06    0.0026       6      73 ..     300     369 ..     295     376 .. 0.87

  Alignments for each domain:
  == domain 1  score: 17.7 bits;  conditional E-value: 7.3e-06
                 XXXXXXXXXXXXX..XXX-HHHHHHHHHHHHHHHHHHHHHHHHHH--SSHHHHHHHHHHHHHHHHHHHHH CS
     Blo-t-5   6 kkkkDefReefDr..llieeleekleklekallklseqvkelektkskelkeqilreltialnfiegakg 73 
                  k+ D++R efD   l +++l+++ e+l++ l+++se++ ++e  k+ +  + il  l ++++  + a +
  CCD26530.1 300 LKEMDKLRAEFDEnsLEVKKLDNEREDLDNHLIQISEKLADMESDKAEARAASILYGLGFSTEAQQKATN 369
                 5788********64488999************************************99999887777765 PP

>> AAA_5  AAA domain (dynein-related subfamily)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1       9.4   3.4e+03      72     100 ..      64      92 ..      64     116 .. 0.73
   2 ?    7.4   0.0     0.012       4.2       4      24 ..     233     254 ..     232     294 .. 0.86
   3 ?    7.2   0.0     0.013       4.8       3      23 ..     565     585 ..     563     595 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 9.4
                 ESGGG--HHHHHHHHHHHHSSEEE..-SS CS
       AAA_5  72 DEveraesevlnsLlslleerrllleegg 100
                 D ve + +++l+ L + l e++  le  g
  CCD26530.1  64 DKVESLAKSILDQLSTQLKENQAKLELTG 92 
                 56788899999999999999998865444 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.012
                 EE--SSSSHHHHHHHGGGGB.S CS
       AAA_5   4 LvGppGtgKselaerlaaal.n 24 
                 LvG+ G+gKs+l + l+++  n
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRElN 254
                 8***************997554 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.013
                 EEE--SSSSHHHHHHHGGGGB CS
       AAA_5   3 lLvGppGtgKselaerlaaal 23 
                  LvG+ G+gK++l + + + l
  CCD26530.1 565 ALVGANGCGKTTLLKVMMEEL 585
                 59***********99988766 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00071      0.25       3      81 ..     233     319 ..     232     397 .. 0.69
   2 ?    1.9   0.1      0.59   2.1e+02      44      89 ..     460     505 ..     415     549 .. 0.75
   3 ?    2.0   0.0      0.53   1.9e+02       1      20 [.     564     583 ..     564     591 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00071
                 EEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C........CS...SSEEEE........T-EB--CHHHHHHHHHHHHHHHT CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas........eravkeelkek........ekkledfsevreeieketekiag 81 
                 +vG+   GKS++l aL ++++++ +   +     el+ +e++  +                 ++        +++l++++++r e+++ + ++++
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRELNVPKHVSILHVEQELRGDETKALQsvldadvwR--------KQllseetkiNERLKEMDKLRAEFDENSLEVKK 319
                 7999****************9988888888888888888888877655544321........223222345567777777777777666666554 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.59
                 ---CCS...SSEEEET-EB--CHHHHHHHHHHHHHHHTSSSS--SS CS
   Dynamin_N  44 eeaseravkeelkekekkledfsevreeieketekiagankgiskk 89 
                 +e++ ++++ e++++ +  ++++e+ ++++   +k+++a+++i+k 
  CCD26530.1 460 KEERRKTAQREYENQMAYRKHLQEFIDKYRYNAAKSQEAQSRIKKL 505
                 3334578889999998889999999999998888888887777543 PP

  == domain 3  score: 2.0 bits;  conditional E-value: 0.53
                 EEEEEBTTTTHHHHHHHHHT CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlg 20 
                 ia+vG+   GK+++l  +++
  CCD26530.1 564 IALVGANGCGKTTLLKVMME 583
                 89*************87775 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.014       4.9      58      78 ..     233     253 ..     227     288 .. 0.75
   2 !    6.8   0.0     0.009       3.2      55      80 ..     563     588 ..     555     620 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.014
      DUF815  58 LwGarGtGKSslvkallneya 78 
                 L+G+ G GKS+l++al ++  
  CCD26530.1 233 LVGQNGIGKSTLLRALSRREL 253
                 89*************987643 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.009
      DUF815  55 nvLLwGarGtGKSslvkallneyaee 80 
                  + L+Ga G+GK +l+k +++e++ +
  CCD26530.1 563 RIALVGANGCGKTTLLKVMMEELRPT 588
                 5779****************998765 PP

>> G-alpha  G-protein alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.2         1   3.7e+02      74     119 ..      73     163 ..      34     202 .. 0.54
   2 ?    6.0   0.2     0.015       5.5      28     108 ..     233     338 ..     216     508 .. 0.64
   3 !    9.2   0.0    0.0016      0.58      23      44 ..     561     582 ..     547     697 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 1
                 HHHHHHHTT....................................................HHHC-SS-SCCCS-HCHHHH.......... CS
     G-alpha  74 ilealesleselsesf.............................................elqelkerldplkkveasliaklssateee 119
                 il++l+++ +e ++++                                              ++e + +l++l k+e+++++k  + +++ 
  CCD26530.1  73 ILDQLSTQLKENQAKLeltgdtskrlldinilqshnskeninttlnmlgvgggaddiehagRKMETRVDLKKLAKAEQKIAKKVAKRNNKF 163
                 3344443333332222222222222222222222222333333333333333333334444555555555555555555554444433333 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.015
                 EEESTTSSHHHHHHHHHHHCS--............--HHHHHCCHHHHHHHHHHHHHHHHHHHHHTT.....................HHHC-SS-SC. CS
     G-alpha  28 llGqseSGKsTilkqlkllykkg............fseeelatwraviqlnivrsiktilealesleselsesf..............elqelkerld. 99 
                 l+Gq++ GKsT+l+ l + + +              + +e +++++v+   + r  k++l + ++ +++l+e+               +l++ +e+ld 
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRELNVpkhvsilhveqeLRGDETKALQSVLDADVWR--KQLLSEETKINERLKEMDklraefdenslevkKLDNEREDLDn 329
                 89**************96654442255555322222222333333333333333..3333333333333322224444333333433322222222220 PP

                 CCS-HCHHH CS
     G-alpha 100 plkkveasl 108
                  l +++++l
  CCD26530.1 330 HLIQISEKL 338
                 233333333 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0016
                 EEEEEEEESTTSSHHHHHHHHH CS
     G-alpha  23 evkllllGqseSGKsTilkqlk 44 
                 + ++ l+G++++GK+T+lk + 
  CCD26530.1 561 DSRIALVGANGCGKTTLLKVMM 582
                 569****************886 PP

>> MobB  Molybdopterin guanine dinucleotide synthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.71   2.6e+02       3      19 ..     232     248 ..     231     267 .. 0.85
   2 ?   11.4   0.0   0.00062      0.22       2      25 ..     564     587 ..     563     619 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.71
        MobB   3 givgksgsGKTtLlekl 19 
                 g+vg++g GK tLl  l
  CCD26530.1 232 GLVGQNGIGKSTLLRAL 248
                 689**********9887 PP

  == domain 2  score: 11.4 bits;  conditional E-value: 0.00062
        MobB   2 lgivgksgsGKTtLleklipelka 25 
                 +++vg +g+GKTtLl+ +++el+ 
  CCD26530.1 564 IALVGANGCGKTTLLKVMMEELRP 587
                 689****************99975 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.12        44      38      56 ..     233     251 ..     225     331 .. 0.84
   2 ?    8.7   0.0    0.0034       1.2      31      50 ..     559     578 ..     545     585 .. 0.86

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.12
      AAA_25  38 laGapgtGKttlaldlala 56 
                 l+G+ g GK+tl+  l+  
  CCD26530.1 233 LVGQNGIGKSTLLRALSRR 251
                 89**********9888765 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0034
      AAA_25  31 pagelallaGapgtGKttla 50 
                  +++ ++l+Ga g+GKttl+
  CCD26530.1 559 QMDSRIALVGANGCGKTTLL 578
                 568899************98 PP

>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.012       4.5       9      32 ..     233     256 ..     231     305 .. 0.73
   2 ?    5.2   0.0     0.031        11       7      27 ..     564     584 ..     559     601 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.5 bits;  conditional E-value: 0.012
                 EEEBTTSSCCCCCCTTSSSS---- CS
      Septin   9 vvGesglGkttlintlfetdliee 32 
                 +vG++g+Gk+tl+++l +++l   
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRELNVP 256
                 69**************99887655 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.031
                 EEEEEBTTSSCCCCCCTTSSS CS
      Septin   7 lmvvGesglGkttlintlfet 27 
                 + +vG++g Gkttl++ ++e+
  CCD26530.1 564 IALVGANGCGKTTLLKVMMEE 584
                 779*************99875 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.03        11       4      28 ..     232     256 ..     229     279 .. 0.87
   2 ?    6.0   0.0     0.021       7.7       2      20 ..     563     581 ..     562     588 .. 0.88

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.03
                 EEEESTTSSHHHHHHHHHTTSEEEE CS
      FeoB_N   4 alvGnpnvGkttlfnaltgakqkvg 28 
                  lvG+  +Gk+tl+ al+  + +v 
  CCD26530.1 232 GLVGQNGIGKSTLLRALSRRELNVP 256
                 69****************9988875 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.021
                 EEEEEESTTSSHHHHHHHH CS
      FeoB_N   2 tvalvGnpnvGkttlfnal 20 
                 ++alvG   +Gkttl+  +
  CCD26530.1 563 RIALVGANGCGKTTLLKVM 581
                 69*************9876 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.18        65       6      26 ..     233     253 ..     229     265 .. 0.80
   2 ?    7.7   0.0    0.0067       2.4       3      21 ..     563     581 ..     561     591 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.18
                 EEESTTSSHHHHHHHHHHHHH CS
       SRP54   6 lvGlqGaGKTttlaKLaallk 26 
                 lvG +G+GK t l  L+++  
  CCD26530.1 233 LVGQNGIGKSTLLRALSRREL 253
                 8***********999887655 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.0067
                 EEEEEESTTSSHHHHHHHH CS
       SRP54   3 villvGlqGaGKTttlaKL 21 
                  i+lvG +G GKTt l  +
  CCD26530.1 563 RIALVGANGCGKTTLLKVM 581
                 589***********98655 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.67   2.4e+02      50      68 ..     233     251 ..     221     308 .. 0.84
   2 ?    9.2   0.0     0.003       1.1      46      70 ..     562     586 ..     548     617 .. 0.81

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.67
       Rad17  50 isGPsGCgkstvvkvLske 68 
                 + G  G gkst ++ Ls+ 
  CCD26530.1 233 LVGQNGIGKSTLLRALSRR 251
                 57999***********985 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.003
       Rad17  46 riLLisGPsGCgkstvvkvLskelg 70 
                   + + G  GCgk+t +kv+  el 
  CCD26530.1 562 SRIALVGANGCGKTTLLKVMMEELR 586
                 4455789************998886 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       9.1   3.3e+03     159     189 ..     126     156 ..     106     175 .. 0.69
   2 ?    0.8   0.0      0.75   2.7e+02      15      44 ..     230     259 ..     222     267 .. 0.83
   3 ?    9.2   0.0    0.0021      0.76      11      37 ..     559     585 ..     553     592 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 9.1
     Pox_A32 159 ssdienllrsmslkgskkkllkvlnilrsae 189
                  +die   r+m+ +++ kkl+k+ + + ++ 
  CCD26530.1 126 ADDIEHAGRKMETRVDLKKLAKAEQKIAKKV 156
                 5788888888888888888888755443333 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.75
     Pox_A32  15 rlalvGgsGsGktvyLlsLlrtlvkkykhi 44 
                 r  lvG+ G Gk + L++L r+  +  kh+
  CCD26530.1 230 RYGLVGQNGIGKSTLLRALSRRELNVPKHV 259
                 6789*************9988877777776 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.0021
     Pox_A32  11 kkpFrlalvGgsGsGktvyLlsLlrtl 37 
                 +++ r+alvG  G Gkt+ L+ ++++l
  CCD26530.1 559 QMDSRIALVGANGCGKTTLLKVMMEEL 585
                 56789****************998876 PP

>> cobW  CobW/HypB/UreG, nucleotide-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.099        36       4      22 ..     232     252 ..     230     292 .. 0.78
   2 ?    6.5   0.1     0.016       5.7       4      23 ..     565     584 ..     562     593 .. 0.83

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.099
                 EEEESTTCCHHHHHHHHH..C CS
        cobW   4 vltGflGsGKTtLlnhll..e 22 
                 +l+G  G GK+tLl++l   e
  CCD26530.1 232 GLVGQNGIGKSTLLRALSrrE 252
                 689999*********998543 PP

  == domain 2  score: 6.5 bits;  conditional E-value: 0.016
                 EEEESTTCCHHHHHHHHHCT CS
        cobW   4 vltGflGsGKTtLlnhllen 23 
                  l+G  G GKTtLl+ ++e+
  CCD26530.1 565 ALVGANGCGKTTLLKVMMEE 584
                 6899**********998854 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.6   5.6e+02      19      40 ..     233     254 ..     223     266 .. 0.84
   2 ?    9.3   0.0     0.002       0.7      12      49 ..     559     592 ..     549     604 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.6
                 EEESTTSSHHHHHHHHHHSSCE CS
         Arf  19 llGLDnaGKtTilkklkleelv 40 
                 l+G  + GK+T+l  l+  el+
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRELN 254
                 6888999********9988765 PP

  == domain 2  score: 9.3 bits;  conditional E-value: 0.002
                 TTEEEEEEEESTTSSHHHHHHHHHHSSCEECSSSSSEE CS
         Arf  12 kkelrilllGLDnaGKtTilkklkleelvttvPTigfn 49 
                 +++ ri l+G  + GKtT+lk +++    +  PT gf 
  CCD26530.1 559 QMDSRIALVGANGCGKTTLLKVMME----ELRPTKGFV 592
                 7889****************98754....467777775 PP

>> DUF2813  Protein of unknown function (DUF2813)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00075      0.27      16      43 ..     222     249 ..     220     280 .. 0.91
   2 ?   -0.1   0.3       1.2   4.2e+02     158     224 ..     299     366 ..     296     372 .. 0.80
   3 ?   -0.9   0.5       2.1   7.4e+02     220     256 ..     456     490 ..     433     523 .. 0.59
   4 ?    2.1   0.0      0.26        95      17      46 ..     556     585 ..     554     593 .. 0.84

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00075
     DUF2813  16 rLSlsleentvLiGENaWGKSSLldALs 43 
                 +L ls+ +   L+G N  GKS Ll+ALs
  CCD26530.1 222 QLTLSFGHRYGLVGQNGIGKSTLLRALS 249
                 6899***********************9 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 1.2
     DUF2813 158 Rlrdarrlredtleaelkeerlerrlenllrrllskpqklsedel.kselqalssllehYfleksasr 224
                 Rl++  +lr +  e++l+ ++l+++ e l ++l++ ++kl++ e  k e +a s l    f+++++++
  CCD26530.1 299 RLKEMDKLRAEFDENSLEVKKLDNEREDLDNHLIQISEKLADMESdKAEARAASILYGLGFSTEAQQK 366
                 88888899999999999999********************9966515677888887777777655554 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 2.1
     DUF2813 220 ksasrkkkrkeressskeqllweklkslnqllkqeee 256
                  +++++++rk+++++ ++q++ +k  +l++++++ + 
  CCD26530.1 456 FYTTKEERRKTAQREYENQMAYRK--HLQEFIDKYRY 490
                 334444444444444444444444..44444443322 PP

  == domain 4  score: 2.1 bits;  conditional E-value: 0.26
     DUF2813  17 LSlsleentvLiGENaWGKSSLldALslil 46 
                 L +++++  +L+G N  GK  Ll+ +   l
  CCD26530.1 556 LDVQMDSRIALVGANGCGKTTLLKVMMEEL 585
                 77899******************9876555 PP

>> Viral_helicase1  Viral (Superfamily 1) RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.39   1.4e+02       8      55 ..     238     281 ..     235     295 .. 0.60
   2 ?    7.3   0.0    0.0098       3.5       5      21 ..     568     584 ..     564     618 .. 0.81

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.39
  Viral_helicase1   8 GcGKStlirkllrtsliltvnrptaelltegkpklpnlsvrtvdsflm 55 
                      G GKStl+r l r +l+    +p  + + +  ++l  ++++ ++s+l 
       CCD26530.1 238 GIGKSTLLRALSRRELN----VPKHVSILHVEQELRGDETKALQSVLD 281
                      77**********99433....333333333334444444444555444 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0098
  Viral_helicase1   5 GvpGcGKStlirkllrt 21 
                      G+ GcGK+tl++  +++
       CCD26530.1 568 GANGCGKTTLLKVMMEE 584
                      889********998887 PP

>> FtsK_SpoIIIE  FtsK/SpoIIIE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.66   2.4e+02      45      59 ..     234     248 ..     228     261 .. 0.93
   2 ?    7.6   0.0    0.0062       2.2      38      61 ..     560     583 ..     548     589 .. 0.85

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.66
                   E--TTSSHHHHHHHH CS
  FtsK_SpoIIIE  45 aGatgsGKStalntL 59 
                   +G  g GKSt l++L
    CCD26530.1 234 VGQNGIGKSTLLRAL 248
                   89***********98 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0062
                   S-.SEEEE--TTSSHHHHHHHHHH CS
  FtsK_SpoIIIE  38 mashllvaGatgsGKStalntLil 61 
                   m s + ++Ga g GK+t l++++ 
    CCD26530.1 560 MDSRIALVGANGCGKTTLLKVMME 583
                   5567899***************95 PP

>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.8       3.1   1.1e+03     112     151 ..     138     178 ..     135     188 .. 0.74
   2 ?    3.4   0.0      0.14        51       4      25 ..     233     254 ..     230     282 .. 0.77
   3 ?    6.0   0.0     0.023       8.4       2      21 ..     564     583 ..     563     591 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 3.1
                 ETTTGGGG-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHH CS
         Ras 112 nKvDleekravsteegeelakelg.lkfletSAktnenvee 151
                 ++vDl++  + +++ ++++ak+++ +  +e+S   n+  ee
  CCD26530.1 138 TRVDLKKLAKAEQKIAKKVAKRNNkFVQYEASKLINQSNEE 178
                 6799999999999999***9998866666777665555554 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.14
                 EEESTTSSHHHHHHHHHHSSCS CS
         Ras   4 lvGdsavGKtslllrfvkdkFk 25 
                 lvG++++GK++ll    + + +
  CCD26530.1 233 LVGQNGIGKSTLLRALSRRELN 254
                 89**********9988777665 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.023
                 EEEEESTTSSHHHHHHHHHH CS
         Ras   2 lvlvGdsavGKtslllrfvk 21 
                 + lvG +++GKt+ll   ++
  CCD26530.1 564 IALVGANGCGKTTLLKVMME 583
                 789***********987765 PP

>> AAA_17  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2       1.3   4.7e+02      41      74 ..     128     163 ..     121     203 .. 0.64
   2 ?    4.7   0.2       0.1        37       1      49 [.     234     288 ..     234     350 .. 0.66
   3 ?    6.4   0.0     0.032        12       1      19 [.     567     585 ..     567     594 .. 0.87

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 1.3
                 SSHHHHCTSHHHHHHHHHHHHHHHHHHHH..HSSEE CS
      AAA_17  41 kardemrklpleekkelqkeaaekiaeea..kkkgv 74 
                 + +++ rk++ +++ + +++a++kia++   +++++
  CCD26530.1 128 DIEHAGRKMETRVDLKKLAKAEQKIAKKVakRNNKF 163
                 555666666666666666666667666642122223 PP

  == domain 2  score: 4.7 bits;  conditional E-value: 0.1
                 EE-TTSSHHHHHHHHHH.HH......TEEEEEHHHHHH.HHHHTTTSHSSHHHHCTS CS
      AAA_17   1 lGgPGsGKgtqceklve.ky......gfthlsaGdllr.eeakrgglakardemrkl 49 
                 +G  G GK+t+++ l + ++       + h++  + lr +e k  +++ + d  rk 
  CCD26530.1 234 VGQNGIGKSTLLRALSRrELnvpkhvSILHVE--QELRgDETKALQSVLDADVWRKQ 288
                 6999********99985244211111444443..44444444444444444444444 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.032
                 EE-TTSSHHHHHHHHHHHH CS
      AAA_17   1 lGgPGsGKgtqceklveky 19 
                 +G  G+GK+t+++ ++e++
  CCD26530.1 567 VGANGCGKTTLLKVMMEEL 585
                 799*********9999987 PP

>> ATPase_2  ATPase domain predominantly from Archaea
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.028        10      26     114 ..     234     335 ..     228     342 .. 0.58
   2 ?   10.2   0.0    0.0014      0.52      23      46 ..     564     587 ..     554     636 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.028
    ATPase_2  26 YGpegsGKtaLlkeiienledkdkyviyy...ialreesiskldefie...........eeeekkklekalgiavpkaeleeilk.eksklvfkaiell 109
                  G  g+GK++Ll+ +  + ++  k+v  +    +lr+++++ l++ ++           e++ +++l+++  ++++    e+ l+ +k  +  + +++ 
  CCD26530.1 234 VGQNGIGKSTLLRALSRRELNVPKHVSILhveQELRGDETKALQSVLDadvwrkqllseETKINERLKEM--DKLRAEFDENSLEvKKLDNEREDLDNH 330
                 5999**********99999998886654311256777777777777667666666544322222222222..222222222233345555555555555 PP

    ATPase_2 110 lekik 114
                 l +i+
  CCD26530.1 331 LIQIS 335
                 55555 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 0.0014
    ATPase_2  23 yfiYGpegsGKtaLlkeiienled 46 
                 + + G  g+GKt+Llk ++e+l+ 
  CCD26530.1 564 IALVGANGCGKTTLLKVMMEELRP 587
                 556799**************9965 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.4       1.1     4e+02     111     152 ..      63     129 ..      42     189 .. 0.54
   2 ?    4.5   0.1     0.087        31      24      50 ..     229     256 ..     220     263 .. 0.80
   3 ?    2.6   3.2      0.35   1.3e+02      96     200 ..     252     348 ..     250     372 .. 0.66
   4 ?    0.2   0.3       1.9   6.8e+02     139     193 ..     450     502 ..     408     515 .. 0.52
   5 ?    9.8   0.0    0.0021      0.75      14      47 ..     554     585 ..     550     593 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 1.1
       DUF87 111 kpaaav.qrsvleealdqakakeekeklssdepveklleelk........................k 152
                 +++ +   +s+l+++ +q+k+++ k +l++d++   l  ++                         +
  CCD26530.1  63 PDKVESlAKSILDQLSTQLKENQAKLELTGDTSKRLLDINILqshnskeninttlnmlgvgggaddI 129
                 4444555666777777777754455555555544444333334444444444444444455554440 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.087
       DUF87  24 rHlAilgsTGsGKSntvavLleelle.k 50 
                 ++ + +g+ G GKS++ + L ++ l+  
  CCD26530.1 229 HRYGLVGQNGIGKSTLLRALSRRELNvP 256
                 677899**************99877644 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.35
       DUF87  96 sldpeelldlleeddkpaaavqrsvleealdqakakeekeklssdepveklleelkkekeelrklknqaiarlldkledllrkggsfsnsstdlialll 194
                 +l++  ++++l + +++++  ++++l+++ld  +   +k+ ls ++ +++ l+e+  + + +  +++   ++l + +edl+++ +++s   ++l ++  
  CCD26530.1 252 ELNVPKHVSILHV-EQELRGDETKALQSVLDADV--WRKQLLSEETKINERLKEMD-KLRAEFDENSLEVKKLDNEREDLDNHLIQIS---EKLADME- 342
                 5677777777777.77777888899999999777..88999999**9**9999999.2234555555556677777777777777773...3333222. PP

       DUF87 195 ekleke 200
                  ++ + 
  CCD26530.1 343 SDKAEA 348
                 333444 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 1.9
       DUF87 139 sdepveklleelkkekeelrklknqaiarlldkledllrkggsfsnsstdliall 193
                 +++++ +   + +  +++  +   + ++++ ++l+++++k++  +++s++  + +
  CCD26530.1 450 GQDFDSFYTTKEE--RRKTAQREYENQMAYRKHLQEFIDKYRYNAAKSQEAQSRI 502
                 4444444333333..3344444445555555555555555555533333333333 PP

  == domain 5  score: 9.8 bits;  conditional E-value: 0.0021
       DUF87  14 vyldlnklvtrHlAilgsTGsGKSntvavLleel 47 
                 v ld+ ++   ++A +g  G GK+++ +v++eel
  CCD26530.1 554 VNLDV-QM-DSRIALVGANGCGKTTLLKVMMEEL 585
                 67777.55.799*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1576  (0.0879023); expected 358.6 (0.02)
Passed bias filter:                      683  (0.0380947); expected 358.6 (0.02)
Passed Vit filter:                       135  (0.0075297); expected 17.9 (0.001)
Passed Fwd filter:                        63  (0.00351386); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              50  [number of targets reported over threshold]
# CPU time: 0.92u 0.32s 00:00:01.24 Elapsed: 00:00:00.48
# Mc/sec: 4755.02
//
Query:       CCD26531.1  [L=296]
Description: hypothetical protein NDAI_0H03580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   15.4   3.9      0.076   13.9   3.9    1.8  1  RCSD       RCSD region
        0.1   13.0   0.2        0.1   13.0   0.2    2.5  3  Rep_Org_C  Putative replisome organiser protein C-terminus


Domain annotation for each model (and alignments):
>> RCSD  RCSD region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   3.9   8.5e-06     0.076      16      87 ..     107     174 ..      82     178 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 8.5e-06
        RCSD  16 evtktsEEavkapekkekspekveekpksPtkeeksPekstgaksPtkkekspekveekkssetkkekaene 87 
                 + ++ + E+ k+++  + ++++ e++p sP     sPek ++++ P+kk   p++++  +s + ++ + en+
  CCD26531.1 107 SNKQGQKES-KSQDGNHDNNKRDEQDPLSPIA--ISPEKRQREHDPIKKGTRPKQTV-SPSMDFQDLRHENQ 174
                 456667787.99999988888889******97..69*************99999998.89999999888885 PP

>> Rep_Org_C  Putative replisome organiser protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.24   2.2e+03      42      61 ..      97     116 ..      85     125 .. 0.63
   2 ?   13.0   0.2   1.1e-05       0.1      27      69 ..     164     206 ..     150     215 .. 0.85
   3 ?   -2.1   0.3      0.57   5.1e+03      35      62 ..     226     254 ..     222     258 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.24
   Rep_Org_C  42 igaknyiqsyknehpddkag 61 
                   ++nyi+   n++ + +++
  CCD26531.1  97 RHSTNYIDALSNKQGQKESK 116
                 45667777766665554443 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 1.1e-05
   Rep_Org_C  27 aeflklpsfqkeqavigaknyiqsyknehpddkagkysvnaye 69 
                 ++f +l  +++ +    a+ y+ +  ne+++d+ +kys n y 
  CCD26531.1 164 MDFQDLRHENQLKSSGNANSYFLDNENENSNDNVQKYSGNDYR 206
                 57889999999999999**********************9986 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.57
   Rep_Org_C  35 fqkeqavigaknyiqsykneh.pddkagk 62 
                  + +  v+ a+   q+ kn +  dd +g+
  CCD26531.1 226 NEEDNNVVNANLDQQKPKNSNdGDDDDGQ 254
                 45566666666666666664414565555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       829  (0.0462379); expected 358.6 (0.02)
Passed bias filter:                      265  (0.0147805); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.40
# Mc/sec: 2241.67
//
Query:       CCD26532.1  [L=426]
Description: hypothetical protein NDAI_0H03590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.5e-33  114.6   0.0    1.4e-32  113.0   0.0    1.9  1  Peptidase_M28  Peptidase family M28


Domain annotation for each model (and alignments):
>> Peptidase_M28  Peptidase family M28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.0   7.8e-37   1.4e-32      11     197 ..     146     419 ..     132     420 .. 0.86

  Alignments for each domain:
  == domain 1  score: 113.0 bits;  conditional E-value: 7.8e-37
                    E...SEEEEEEEE--B-TTTTCCT---TTTTHHHHHHHHHHHHHCHH.......................................GGCCSSEEEE CS
  Peptidase_M28  11 t...devlllgAHyDsvgvgrgpifvGAdDnAsgvaalLelarvlaa.......................................sgsrpkrgvr 64 
                    t   d++l+l+ HyD++ +   ++f GA+D+++++++lL+l++++ +                                       ++s   +g++
     CCD26532.1 146 TnmnDKYLVLAVHYDTMIK--PEGFIGAMDSGASCGILLYLSKFIDTiysydhdddmevtstlaysigkkwhkkkniydftklyddNSSGTFKGIK 239
                    145589************7..4489**********************************************************9874445699*** PP

                    EEEESSCSG........SSHHHHHHHH...HHC...............CCTTEEEEEEECS-SSSS--EEE......................HHH CS
  Peptidase_M28  65 flffdaEEa........gllGSkafak...akp...............elkkiaavlnlDmvgsggkellf......................esg 112
                    ++ffd+EEa        +++GS+++ak   + +               el++i+++++lD++gs+ ++l +                       +g
     CCD26532.1 240 IIFFDGEEAiekwsdddSIYGSRHLAKkwqE-QkqtiklkngtiietnELDNIEVFVLLDLLGSKSDTLESimgqrvpsyysethmhygllstIEG 334
                    **************************76631.245677777777777778888*****************99************998888888777 PP

                    HHHCHHHHHHHHHHHHHTT-TTSCCEEEEESSTT-STTHHHHTTT--EEEECTSSS-TTTTSTTSSGGGB-HHHHHHHHHHHHHH CS
  Peptidase_M28 113 dkssselekelkalakpvgraaaedpfdersgrgrsDhspflkagvpvldlaetgfpevyHtprDtldnidkdtlariaelvlel 197
                    +  +s+++  ++++  pv   +   + + +++ + +Dh+pf ++gvp+l+l++ +fp+ +Ht +Dt++n+d+++++r+a +++e+
     CCD26532.1 335 EYFESNISSRMESSRIPVLDPSNLVFEQFGMSVIGDDHLPFYDYGVPILHLIPYPFPSSWHTMSDTFANLDQEQVNRWAIILSEF 419
                    77778888888877777777643333333447888********************************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       691  (0.0385409); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.23s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3347.98
//
Query:       CCD26533.1  [L=2250]
Description: hypothetical protein NDAI_0H03600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-42  144.1   0.2    2.9e-36  125.1   0.5    5.2  5  PIP5K       Phosphatidylinositol-4-phosphate 5-Kinase
    2.7e-27   95.6   0.0    5.1e-27   94.6   0.0    1.3  1  Cpn60_TCP1  TCP-1/cpn60 chaperonin family
    2.4e-17   62.8   7.9    2.4e-17   62.8   7.9    1.8  2  FYVE        FYVE zinc finger
  ------ inclusion threshold ------
        1.5    9.1   8.0        0.4   10.9   2.8    2.8  3  OrfB_IS605  Probable transposase
        7.6    6.8   9.3        2.6    8.3   5.4    2.2  2  IBR         IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> PIP5K  Phosphatidylinositol-4-phosphate 5-Kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3      0.44   1.6e+03     185     194 ..     329     354 ..     207     390 .. 0.58
   2 ?   -2.9   4.1      0.88   3.2e+03     175     194 ..     531     588 ..     457     671 .. 0.66
   3 ?   -7.1   6.4         5   1.8e+04     183     194 ..    1518    1549 ..    1491    1581 .. 0.42
   4 !  125.1   0.5   8.1e-40   2.9e-36       9     166 ..    2010    2176 ..    2003    2180 .. 0.91
   5 !   27.0   0.0   6.8e-10   2.4e-06     220     274 .]    2177    2237 ..    2175    2237 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.44
                 ---------................- CS
       PIP5K 185 kesekseee................a 194
                 +e+ ++++e                +
  CCD26533.1 329 EEEYEQSQEnlsennhrsfnpakyyS 354
                 11111111112222233333444332 PP

  == domain 2  score: -2.9 bits;  conditional E-value: 0.88
                 -------------------......................................- CS
       PIP5K 175 kkesessssekesekseee......................................a 194
                 ++++++ ++++++++++++                                      +
  CCD26533.1 531 NNNNDNVNNSNKNTAAQANnntndnkyhhprrhsvisnrgnnnplssnfpsgiftspT 588
                 1111111111111111111223445666777777777777777777777777776432 PP

  == domain 3  score: -7.1 bits;  conditional E-value: 5
                  -----------.........................- CS
       PIP5K  183 sekesekseee.........................a 194 
                  ++++s     e                          
  CCD26533.1 1518 EKQSS-----EhsqdnvslhesrsslikmrnsaqqeF 1549
                  11111.....112233444445555554433221110 PP

  == domain 4  score: 125.1 bits;  conditional E-value: 8.1e-40
                  ----SSS--EEEETTSSEEEEEE-HHHHHHHHHHHHHHHHHHTT-T....T--S--EEEEEEEE.E......TTEEEEEEEEE-SS-TTS--SEEEE CS
       PIP5K    9 sseGkSgsffylteDkkfiiKtitksevkflrkllpeYyehvkenp....nsLltrfyglhrvklk......ggkkvrfvVmenlfptdkeiheryD 95  
                  ss GkSgs f  t D++fiiK +++se + + k+ p Y+e++++       + l++++g+++++++      ++ k+ +++menlf+ +++ ++ +D
  CCD26533.1 2010 SSGGKSGSGFLKTLDDRFIIKELSHSELDAFIKFAPYYFEYMAQAMfhdlPTTLAKVLGFYQIQVRnpvggpKSYKMDVIIMENLFY-NRKTTRIFD 2105
                  689****************************************87766679*************9999*9999999**********5.6777***** PP

                  E-S--TT-S--HHHHTSSS-EEEHHHHHHHST...EEE-HHHHHHHHHHHHHHHHHHHHTTB-S-EEEEEEEB CS
       PIP5K   96 LKGstvgReakkkeeekkektlkDlDliekkek..lklgkekreelleqlekDvefLeslnimDYSLLlGihn 166 
                  LKGs  +R+++++   k++++l D +++e   +  +++ + +++ l + l +D+ fL+++n+mDYSL++Gi n
  CCD26533.1 2106 LKGSMRNRHVEQT--GKENEVLLDENMVEYIYEspIHVREYDKKLLRASLWNDTLFLAKMNVMDYSLVIGIDN 2176
                  **********975..44566899***999865578************************************65 PP

  == domain 5  score: 27.0 bits;  conditional E-value: 6.8e-10
                  SEEEEEEEEE----B--------------......--------TTHHHHHHHHHHHHHHHT CS
       PIP5K  220 gkevyylgiIDiLqkynlkKklehalksl......kkdkksisavpPkeYaeRFlkfieki 274 
                  + +++ +giID++ ++++ Kkle+++k          ++k+ ++v+P++Y++RF + +e++
  CCD26533.1 2177 EGYTLTVGIIDFIRTFTWDKKLESWVKEKglvgggGSSTKKPTVVTPRQYKNRFREAMENY 2237
                  567899*********************99999*998888899***************9975 PP

>> Cpn60_TCP1  TCP-1/cpn60 chaperonin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   1.4e-30   5.1e-27     164     354 ..     839    1030 ..     816    1036 .. 0.89

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 1.4e-30
                  C..EECCCCEECECTTSEEESEEEESS--SSTTSSCEEECEEEEEESS-BS--HHCCHHHCCCCSCCHHHHHHHHHHHHHHHHHHHHHHTTECEEEE CS
  Cpn60_TCP1  164 r..ikvvkieggsledselveGlvldkgvlspdmpkklenakvllldvsLeiektetkttvvlsdaeeleklekaeekqleellekiiksgvnvvvc 258 
                  +  +k+++i gg++e s +++G+v++k++  ++mp+ l n+++ll+ +++e++k++t           l++++ +e+++l +l+ ++++++ +++++
  CCD26533.1  839 QtyVKIKRISGGKIEASDFINGIVFSKSLPCKSMPRYLNNPRILLIMFPIEYQKNKT-------HFLSLQSVMAQENEYLAKLVTRLTALNPDIIFV 928 
                  33499**************************************************44.......445789999************************ PP

                  SS-B-HHHHHHHHHCT-EEE-S--HHHHHHHHHHHT--EBSCGGGGGC.GC-EEEEEEEECCE.....TTCCEEEEECESSSSXEEEEEEESTCCCH CS
  Cpn60_TCP1  259 qkgiddlalhflakngilalrrvkkkdlerlakatGatavssledltp.eelGtakkveeeki.....gsekttiieevksgkiatillrgatdtvl 349 
                    +++ +al++l ++gi++  ++k + +er+ak+t a + +sl++l++  +lG+++++e++++      s+++t++++++ +   tillrg t+++l
  CCD26533.1  929 GAEVSRYALKLLDEAGIIVQFNMKPQIIERIAKLTEADIATSLDKLSSnFKLGKCGSFEVKTYiyqenISKTYTFLTGCDPSLGGTILLRGDTQEIL 1025
                  ***********************************************7367******987654222114689************************* PP

                  HHHHH CS
  Cpn60_TCP1  350 deier 354 
                   +i++
  CCD26533.1 1026 RKIKQ 1030
                  *9986 PP

>> FYVE  FYVE zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   7.9   6.7e-21   2.4e-17       2      66 ..     241     305 ..     240     307 .. 0.95
   2 ?   -4.1   0.1         5   1.8e+04      27      33 ..    1285    1291 ..    1284    1295 .. 0.70

  Alignments for each domain:
  == domain 1  score: 62.8 bits;  conditional E-value: 6.7e-21
                 ---...--SB-TTT--B--SSS--EE-TTT--EE-STTS-EEE.EEGGGTEEEEEEE-HHHHHHH CS
        FYVE   2 kwkddsevkkCeiCakkFsllrrrhhCrlCGkvvCekCssklvallekeaeeksvrvCkeClael 66 
                 +w++d++v+ C  C k+Fs++rr+hhCr+CG+++C+ C+     +    ++ + +rvC++C++++
  CCD26533.1 241 YWMKDESVNDCYDCGKPFSTFRRKHHCRICGQIFCHYCTLLIDGKRFGFNDLNTLRVCDHCFQNI 305
                 7***************************************9999999999************987 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 5
                  E-TTT-- CS
        FYVE   27 hCrlCGk 33  
                  +C+ CG 
  CCD26533.1 1285 YCKKCGT 1291
                  4777774 PP

>> OrfB_IS605  Probable transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.8   0.00011       0.4      43      96 ..     630     682 ..     624     684 .. 0.90
   2 ?   -3.1   0.0       2.4   8.7e+03      23      62 ..    1136    1175 ..    1136    1186 .. 0.72
   3 ?   -2.7   0.1       1.9   6.7e+03      48      94 ..    1662    1709 ..    1642    1719 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00011
  OrfB_IS605  43 g.rrlksdykylakeiaelqsklkksknykkasrklarlhrkrsrrrkhllhkla 96 
                 + r++++ +k+l++++a lq+++++ k   + ++ +++ ++ ++r+r+ l h+++
  CCD26533.1 630 PiRSIRNSNKSLQRAQASLQRIQNRRK--SRSRTHVSKSSDSLTRIRNLLSHSTS 682
                 558999********************9..99**************9998888876 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 2.4
  OrfB_IS605   23 lGinnLatvvtedgtwflykgrrlksdykylakeiaelqs 62  
                  lGi+  +t+ + +  ++++k  ++   + +++k+ ++ + 
  CCD26533.1 1136 LGIESTLTMKDLKYVTKFIKESEIEDLKSQFEKRSRQWEL 1175
                  7888888888888777666666777777777777777655 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 1.9
  OrfB_IS605   48 sdykylakeiaelq.sklkksknykkasrklarlhrkrsrrrkhllhk 94  
                  s++++l++e+ +lq  k+k +  + ++s+ +  +++ +++ +++ lh 
  CCD26533.1 1662 SKEFELQREKERLQlNKYKYQALRLQTSSPIVEIYQDVNDAVDEPLHD 1709
                  677888888888883344555557888888888888888888877775 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.4   0.00073       2.6       8      52 ..     238     278 ..     231     282 .. 0.87
   2 ?   -1.9   0.1       1.2   4.1e+03      38      47 ..    1272    1292 ..    1230    1295 .. 0.57

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00073
         IBR   8 lkkslesdpnlkwCprpdCeaiieksegcksvtCskCgfefCfnC 52 
                  k++  +d+++  C   dC+++++    +++  C+ Cg+ fC  C
  CCD26533.1 238 SKQYWMKDESVNDCY--DCGKPFSTFRRKHH--CRICGQIFCHYC 278
                 6788889999****9..******88888666..*********999 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 1.2
         IBR   38 s...........vtCskCgfe 47  
                  +           + C+kCg++
  CCD26533.1 1272 KlpklkdiilswSYCKKCGTS 1292
                  044444555544447777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1869  (0.104245); expected 358.6 (0.02)
Passed bias filter:                      361  (0.020135); expected 358.6 (0.02)
Passed Vit filter:                        51  (0.00284455); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.30u 0.31s 00:00:01.61 Elapsed: 00:00:00.47
# Mc/sec: 14340.26
//
Query:       CCD26534.1  [L=520]
Description: hypothetical protein NDAI_0H03610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-08   32.9   0.0      0.017   16.0   0.0    3.7  3  WD40         WD domain, G-beta repeat
      8e-08   32.5   0.0      0.047   14.0   0.0    3.9  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
      0.013   14.5   0.9        3.8    6.4   0.1    2.8  3  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.22   1.3e+03       2      16 ..     122     136 ..     121     141 .. 0.86
   2 !   16.0   0.0   2.9e-06     0.017       2      34 ..     240     273 ..     239     275 .. 0.91
   3 !   11.3   0.0   8.4e-05       0.5      11      37 ..     295     321 ..     282     322 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.22
                 EEEEEEESSSSEEEE CS
        WD40   2 qclrtltGHssvtsl 16 
                 ++l+tl+ Hs+v++l
  CCD26534.1 122 RLLHTLEIHSNVNGL 136
                 579******88*999 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2.9e-06
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtv 34 
                 q++ ++++H + + slaf+ +g++la++sd+gt+
  CCD26534.1 240 QPTMVIEAHrGQIASLAFNFSGTLLATASDKGTI 273
                 6788899**888*****************99998 PP

  == domain 3  score: 11.3 bits;  conditional E-value: 8.4e-05
                 SSEEEEEEETTSSEEE.EEETTSEEEEE CS
        WD40  11 ssvtslafspdgawla.sGsdDgtvriW 37 
                 + ++s++fs+d ++la ++s  +tv+i+
  CCD26534.1 295 TKIYSMCFSDDDTFLAvTSS-SKTVHIF 321
                 349************85667.*****97 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.48   2.8e+03      37      60 ..       4      27 ..       2      41 .. 0.85
   2 ?    2.5   0.0     0.031   1.9e+02      44      81 ..      96     132 ..      71     140 .. 0.83
   3 !   14.0   0.0   7.8e-06     0.047      35      77 ..     246     289 ..     225     294 .. 0.82
   4 !   11.6   0.0   4.3e-05      0.26      30      75 ..     286     331 ..     283     342 .. 0.80

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.48
  ANAPC4_WD40 37 edsevrsLaWkpdgklLavaysdg 60
                 ++se++ +++++ g+ + +++s g
   CCD26534.1  4 RSSEITFVNFNQTGSCISMGTSRG 27
                 6789999**********9999987 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.031
  ANAPC4_WD40  44 LaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  La k++ + L v  +  ++ ++d+ + +++h+l+++s+
   CCD26534.1  96 LAVKMNKSRLTVLLQ-EQIYIYDITNMRLLHTLEIHSN 132
                  566677777777765.4899*************99987 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 7.8e-06
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdg.evrlldaesgkvvhsls 77 
                  +++ +++ sLa++ +g+lLa a ++g  +r++++e+g  + +++
   CCD26534.1 246 EAHRGQIASLAFNFSGTLLATASDKGtIIRVFNVETGVKLYQFR 289
                  568899*******************9568*******98887775 PP

  == domain 4  score: 11.6 bits;  conditional E-value: 4.3e-05
  ANAPC4_WD40  30 wtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhs 75 
                  +++ + +   ++ s++++ d+++Lav  s  +v++++ ++   + s
   CCD26534.1 286 YQFRRGTYPTKIYSMCFSDDDTFLAVTSSSKTVHIFKLYKSMDITS 331
                  556666667899*************************998765554 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.1   6.2e+02     182     233 ..      78     130 ..      70     137 .. 0.69
   2 ?    6.4   0.1   0.00064       3.8     178     216 ..     239     279 ..     195     287 .. 0.74
   3 ?    5.2   0.1    0.0015       8.9     188     219 ..     295     326 ..     281     334 .. 0.87

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.1
    Ge1_WD40 182 lkieehsliveaafspdGtalatasedGev.kffqvyledeeeprCLheWkPh 233
                 ++ ++hs i e +f +   a+ +  +  +v    q+y+ d ++ r Lh    h
  CCD26534.1  78 INTKKHSVICEVTFPTSILAVKMNKSRLTVlLQEQIYIYDITNMRLLHTLEIH 130
                 66677777777777766555555444333303459999999999999987766 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00064
    Ge1_WD40 178 eegllkieehs.liveaafspdGtalatasedGe.vkffqv 216
                  + ++ ie h  +i + af   Gt latas  G+ ++ f v
  CCD26534.1 239 LQPTMVIEAHRgQIASLAFNFSGTLLATASDKGTiIRVFNV 279
                 3455667777659******************9972577776 PP

  == domain 3  score: 5.2 bits;  conditional E-value: 0.0015
    Ge1_WD40 188 sliveaafspdGtalatasedGevkffqvyle 219
                 ++i +  fs d t la++s+  +v+ f++y +
  CCD26534.1 295 TKIYSMCFSDDDTFLAVTSSSKTVHIFKLYKS 326
                 4788999**********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       549  (0.0306208); expected 358.6 (0.02)
Passed bias filter:                      409  (0.0228122); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.43
# Mc/sec: 3594.28
//
Query:       CCD26535.1  [L=763]
Description: hypothetical protein NDAI_0H03620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-23   83.9   1.2      4e-22   79.1   0.7    2.5  2  Arrestin_C  Arrestin (or S-antigen), C-terminal domain
    7.5e-06   26.1   0.0    0.00014   21.9   0.0    2.3  1  Arrestin_N  Arrestin (or S-antigen), N-terminal domain
     0.0037   17.0   0.0      0.013   15.2   0.0    1.9  2  LDB19       Arrestin_N terminal like


Domain annotation for each model (and alignments):
>> Arrestin_C  Arrestin (or S-antigen), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.032   1.9e+02      78     130 ..     154     204 ..     106     207 .. 0.80
   2 !   79.1   0.7   6.6e-26     4e-22       1     134 []     224     379 ..     224     379 .. 0.95

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.032
                 .EEEEEEE.----B-----S---EEEEEEEEEEEEEEESSEEEEEEEEEEEEE CS
  Arrestin_C  78 kletevelqiPeeltpssarnvelikvsYklkvkltlsgsggelslelPivlg 130
                 ++e+ ++  +P ++ +s +    + +++Y+l+ +++   +g++l ++ Pi ++
  CCD26535.1 154 NYELPFNTILPGSIHESVE-GLTNASMKYYLEAVIERR-CGNDLICTKPIRVV 204
                 5555555567888888886.999999**********77.999********986 PP

  == domain 2  score: 79.1 bits;  conditional E-value: 6.6e-26
                 ----EEEEEEES-SEEETT--EEEEEEEE.E-SSSEEEEEEEEEEEEEEEESS..SEEEEEEEEEEEEE---................B-TTEE.EEEE CS
  Arrestin_C   1 wdgkvsleaslpkkgyvpGetipvtvkid.ndskkkvkkikvslvqhvdvcafnrsnkkeknvvaksdsvkv................tsaakdklete 82 
                 w++kv++ +s+p+k+ + G  ip+ + ++  ++++k   ikv+lv+ v+ c + +  +k ++v++k + +++                + +++dk+e++
  CCD26535.1 224 WPDKVEYCISVPSKANPVGALIPIDIVMVpLLKGLKSGPIKVTLVEIVQTCGNPGTLTKNEHVITKLKLKDPkeylsqyvedesyhmeDIEFQDKWEIQ 322
                 99***************************77***********************************8888888************************** PP

                 EEE.----B--...---S---EEEEEEEEEEEEEEE...SSEEEEEEEEEEEEEB--- CS
  Arrestin_C  83 velqiPeeltp...ssarnvelikvsYklkvkltls...gsggelslelPivlgsvpl 134
                 + +qiP++l++   +++  +++ikvs+klk++++l    g+ +el+++lP++l+++p+
  CCD26535.1 323 TAIQIPPSLAKctqDCT-IKKNIKVSHKLKFVICLInpdGHVSELRASLPVQLFISPF 379
                 ******99999887886.******************9875888************995 PP

>> Arrestin_N  Arrestin (or S-antigen), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.4e-08   0.00014      19     143 ..      44     207 ..      42     210 .. 0.78

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 2.4e-08
                 EEEEEE-CCCCTT.CEEEEEEEEEEEESSSSTTTT........................................CCCEEEEEEEEEEEEESTSSSSS. CS
  Arrestin_N  19 dGkvlleteelkkarkvkielsgkartgweeseva........................................gktfrkdltlkkkqeyleteksll 77 
                 +G+++l+ +e+++++k+ ++++g  ++++   ++                                         +k++++   l+++ +  ++ + + 
  CCD26535.1  44 SGVIVLSVKEPIQIKKIALKMNGILKVNTPMTHNPnkflryskrlyqhswddlsirdylqnlytnhtrgrgasisTKSSSNLAPLAAQHK--SSASLVS 140
                 89*********************8877766444336699*************************88888777654333333333333322..2222223 PP

                 SSSSHHHHHHHH-TTEEEEEE---TTS--SECS.GEEEEEEEEEEEEECCCE--C.CCEEEEEEEEE CS
  Arrestin_N  78 kskkdsqekLpkGehafpFsfelPknlpsSfeG.kaggvrYevkvtldrpwkidkkkkkvftVirkl 143
                  + ++++ +L +G+++ pF+  lP ++  S+eG +  + +Y+++++++r    d  ++k + V+r+l
  CCD26535.1 141 LNGSTGHHTLVRGNYELPFNTILPGSIHESVEGlTNASMKYYLEAVIERRCGNDLICTKPIRVVRTL 207
                 333688899************************56799***********998888888888888776 PP

>> LDB19  Arrestin_N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.2e-06     0.013      44      91 ..     147     192 ..     125     247 .. 0.76
   2 ?   -4.1   0.0       1.8   1.1e+04      66      93 ..     334     359 ..     327     371 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.2 bits;  conditional E-value: 2.2e-06
       LDB19  44 tkdlkvGsysyPfsylipGslpassslgsnaetkvkyeliavvvykdp 91 
                  + l  G+y+ Pf  ++pGs+  s++ g  +++ +ky+l+av+  + +
  CCD26535.1 147 HHTLVRGNYELPFNTILPGSIHESVE-G-LTNASMKYYLEAVIERRCG 192
                 566889******************99.4.556789*******987554 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 1.8
       LDB19  66 assslgsnaetkvkyeliavvvykdptp 93 
                 ++     ++++kv+++l  v++ ++  p
  CCD26535.1 334 CTQDCTIKKNIKVSHKLKFVICLIN--P 359
                 4444455677888888888888866..4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (763 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       564  (0.0314574); expected 358.6 (0.02)
Passed bias filter:                      339  (0.0189079); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.24s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 5466.57
//
Query:       CCD26536.1  [L=365]
Description: hypothetical protein NDAI_0H03630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
     0.0016   18.6   0.1     0.0062   16.7   0.1    1.9  1  Asparaginase_C  Glutaminase/Asparaginase C-terminal domain


Domain annotation for each model (and alignments):
>> Asparaginase_C  Glutaminase/Asparaginase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   3.5e-07    0.0062      27     109 ..     259     358 ..     249     363 .. 0.85

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 3.5e-07
                     EEEEEBTTTB--HHHHHHHHHHHTTT-EEEEEESSSBS-----H.......................HHHHHTEEE-TT--HHHHHHHHHHHCTT CS
  Asparaginase_C  27 vvlegtGvGnlpsallealkeakargivvvatsqcpsgsvsnseye..................agkelerlgvisaddmtpeaarikLmlllgk 103
                     +v+ ++  G+ +s+l+  l +   +g vvv +sq  s s s s+ +                   +++    g+isa+ ++p++a i+L ++ ++
      CCD26536.1 259 IVVPIVYEGSYSSNLVSSLGNS-VNGLVVVSSSQSNSTSSSTSSASqginlpivyasgnsklgyIRNDSVPTGAISAGYLSPAQAQILLSVAVAN 352
                     6666666788888888888777.5899***********999998779************99999888899999*********************9 PP

                     ---HHH CS
  Asparaginase_C 104 gldpae 109
                     g ++ +
      CCD26536.1 353 GVNSTQ 358
                     987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       607  (0.0338558); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.38
# Mc/sec: 2915.09
//
Query:       CCD26537.1  [L=241]
Description: hypothetical protein NDAI_0H03640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.7e-13   49.3   6.2    4.8e-13   48.9   6.2    1.2  1  Far-17a_AIG1  FAR-17a/AIG1-like protein


Domain annotation for each model (and alignments):
>> Far-17a_AIG1  FAR-17a/AIG1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   6.2   2.7e-17   4.8e-13      20     198 ..      31     224 ..      11     227 .. 0.75

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 2.7e-17
  Far-17a_AIG1  20 fhsekelaneaayGgkfkyLtfiglvlqalfftlallaD..........eltlsallklrdnllavlafPvevlvsvlFWgLyliDrelvypkllde 106
                   +++ +  + +++  g+ ++Lt i++++ +lf  +  +aD           l+++  +++ +  +  +a+ +e +v  ++W L+l+  +l+++   ++
    CCD26537.1  31 ATTITLPP-SLRQAGHKQFLTNISVIV-TLFSNITNIADffiqryakcpTLRNRS-HRISKHTILPVALVMESIVPAVYWPLRLFAMKLIMQGIPEN 124
                   44433333.33666888******9876.678888888999*****9985555554.55666666777889********************9987666 PP

  Far-17a_AIG1 107 l....ipdWlnhsmHtvvlvailleifllkhkyp...srlaalalsaafallYliwierv..aqfngvwvYPvlealslegrvlffalsavvmally 194
                        ip  +++++H+v++v+++++ +l+    +   s+++a++++  ++l+Y   +           ++YP+l+  ++ ++ ++f++++ +++l y
    CCD26537.1 125 NspspIPLSVDCAIHLVPFVFLFADHYLSGSGEKfviSNKKAWVIVTLLGLSYYRFLGLLinTERGQSYPYPFLDVDEP-YKSIIFVAVTSITWLFY 220
                   67777999*********************99888889***************9766554400445559******97665.55666666777777777 PP

  Far-17a_AIG1 195 llle 198
                   +l +
    CCD26537.1 221 VLYQ 224
                   7654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       451  (0.0251548); expected 358.6 (0.02)
Passed bias filter:                      292  (0.0162865); expected 358.6 (0.02)
Passed Vit filter:                        13  (0.000725082); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 1936.05
//
Query:       CCD26538.1  [L=106]
Description: hypothetical protein NDAI_0H03650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.1e-36  123.7  11.4    4.7e-36  123.1  11.4    1.3  1  Ribosomal_L44  Ribosomal protein L44


Domain annotation for each model (and alignments):
>> Ribosomal_L44  Ribosomal protein L44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.1  11.4   2.6e-40   4.7e-36       1      76 []      19      94 ..      19      94 .. 0.99

  Alignments for each domain:
  == domain 1  score: 123.1 bits;  conditional E-value: 2.6e-40
                   EEEEEEEEE-------SSSHHHHHHHH.H-SSSGGGGS----.--SSBB--EEEEETTT--EEE----BBS--EEE CS
  Ribosomal_L44  1 kHtehkveqykkgkdselaqgkRrydrkqsgygGqtkpvfkkkaKttKKivlrleCteCkkkrlkalkRakkfelv 76
                   kHt+hkv+qyk+gk+s +aqgkRrydrkqsg+gGqtkp+f+kkaKttKK+vlrleC++Ck+k +++lkR+k+fel+
     CCD26538.1 19 KHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPIFHKKAKTTKKVVLRLECVNCKTKAQLTLKRCKHFELG 94
                   8*************************************************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       700  (0.0390429); expected 358.6 (0.02)
Passed bias filter:                      241  (0.0134419); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.25s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 837.85
//
Query:       CCD26539.1  [L=315]
Description: hypothetical protein NDAI_0H03660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.1e-115  382.9  20.0     1e-114  382.8  20.0    1.0  1  Chs7      Chitin synthase export chaperone


Domain annotation for each model (and alignments):
>> Chs7  Chitin synthase export chaperone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.8  20.0  5.8e-119    1e-114       2     286 ..       3     302 ..       2     303 .. 0.98

  Alignments for each domain:
  == domain 1  score: 382.8 bits;  conditional E-value: 5.8e-119
        Chs7   2 fgdFdsiCrktalplCnllkss............kset.eakegiepeCyargielantiifnlgsilihivalivtlililrvrskktAvGRkEillf 87 
                 ++dF+siC k++lplC+++ks+            + +  + ++gi+p+Cy+r i lant+if +g+++i+i al v+li+i+++r+k+tA+GR+E+l+f
  CCD26539.1   3 ISDFASICAKAPLPLCSVVKSTshyilsnsttvhNFDPeHLNVGILPRCYSRPIVLANTVIFGIGNAFINIGALGVLLIIIFNIRQKYTAIGRTEYLYF 101
                 689******************************8666679*********************************************************** PP

        Chs7  88 lllyllleilelvvdggviplsskvypyfvavqiglisatlwiLllnglvgfqlleDGtplSllllrlsslvlfivtflialdtfksw..taelsstkt 184
                 ++l+lll+i++l+vd+gv+p++s++ypyfva+qig+++a++w+Ll+ g++gf+l+eDGt +S+ ++r++s++ f+++fl +++tfksw  ++++ss++t
  CCD26539.1 102 FQLTLLLTIFTLIVDCGVSPPGSSSYPYFVAIQIGFAGACCWSLLVTGFLGFNLWEDGTFKSMFFVRTASFLGFAANFLASILTFKSWiqDHHISSMDT 200
                 ****************************************************************************************999999***** PP

        Chs7 185 iaLfvllyllnlvllvvyvvlqlilvlrvLeerwplgalllgvllfvigqvllyvlskkiCegvkhyidGlffetlcnllavmmvykfWdsiTeddlef 283
                 +++fv++y++n+v+l++y+++ql+++l+v++++w++g++llgv++fv+gq++ y+ls+ iCegv+hy+dGlff++lcnl+++mmvyk+Wd++T+ddlef
  CCD26539.1 201 TGMFVVVYIVNAVILFIYTLCQLLVSLFVVRNLWVTGSILLGVFFFVMGQIMSYALSNVICEGVNHYLDGLFFGSLCNLFTLMMVYKIWDMTTDDDLEF 299
                 *************************************************************************************************** PP

        Chs7 284 svg 286
                 sv+
  CCD26539.1 300 SVS 302
                 *97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1009  (0.0562775); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.25s 00:00:00.75 Elapsed: 00:00:00.43
# Mc/sec: 2218.46
//
Query:       CCD26540.1  [L=247]
Description: hypothetical protein NDAI_0H03670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
        1.2    8.1  28.8        1.4    7.8  28.8    1.1  1  CytochromB561_N  Cytochrome B561, N terminal


Domain annotation for each model (and alignments):
>> CytochromB561_N  Cytochrome B561, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  28.8   7.7e-05       1.4      69     231 ..      30     201 ..       4     241 .. 0.63

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 7.7e-05
  CytochromB561_N  69 ailslsalikfislfkalva....vqskspsketkeplvlterqlkllglksndssvvtesrkkpPkskss.lqasssevlvplhqsvssssse 157
                      +i s  +++ ++ + k+l      v++ + +     +++l++   + +  k ++ s+vt+s+   P  ++   + s+   l+p + sv ssss 
       CCD26540.1  30 FITSDGVVYSYAVMTKTLKPatmvVKTVQYTTTRVREVTLSNSVIATTTEKYTVASTVTTSSSSSPINSRDaSTTSAAVSLSPTSLSVPSSSSF 123
                      34444444444444444433333344444445557899999999***************9877777655554777777777*********9996 PP

  CytochromB561_N 158 srkgsdkssagsgkkleSistssks....saspsvylrsslvdlsssplssnlsaensvqsSeeidsaksspwsrkra 231
                       ++ s   ++ s+k ++++s ss+s    ++s+  ++ ss v+ s+  +s  +s+  s+ +S+   s +ssp s+k  
       CCD26540.1 124 TTITSAYQTSPSTKTTKTLSPSSSSsskkQMSTLQLQSSSVVSSSADSTSIISSITSSLITSSTDVSSNSSPISSKAD 201
                      666555555555555555543333311225666444344466666666665777778877777777778888777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1796  (0.100173); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        56  (0.00312343); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.27s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 1811.72
//
Query:       CCD26541.1  [L=70]
Description: hypothetical protein NDAI_0H03680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-16   60.2   1.7    1.4e-16   59.9   1.7    1.2  1  DNA_RNApol_7kD   DNA directed RNA polymerase, 7 kDa subunit
      0.004   16.7   0.8        1.5    8.5   0.1    2.2  2  zf_UBZ           Ubiquitin-Binding Zinc Finger
     0.0067   16.4   0.4     0.0095   15.9   0.4    1.3  1  DZR              Double zinc ribbon
  ------ inclusion threshold ------
      0.011   15.6   0.9        3.9    7.4   0.1    2.3  2  TFIIS_C          Transcription factor S-II (TFIIS)
      0.012   15.6   0.2      0.012   15.6   0.2    1.1  1  HypA             Hydrogenase/urease nickel incorporation, met
      0.019   14.8   0.2      0.021   14.7   0.2    1.1  1  MCM_OB           MCM OB domain
      0.019   14.9   0.4      0.025   14.6   0.4    1.3  1  zinc-ribbons_6   zinc-ribbons
      0.073   13.2   0.0      0.081   13.1   0.0    1.1  1  IrmA             interleukin receptor mimic protein A
       0.08   12.8   2.4       0.11   12.4   2.4    1.3  1  Ribosomal_L40e   Ribosomal L40e family
      0.085   12.8   1.4        1.5    8.8   0.2    2.1  2  DUF4428          Domain of unknown function (DUF4428)
      0.098   12.6   2.5       0.17   11.8   1.9    1.7  3  Zn_ribbon_SprT   SprT-like zinc ribbon domain
       0.12   12.6   2.5        8.4    6.7   0.2    2.2  2  DUF2197          Uncharacterized protein conserved in bacteri
       0.16   12.7   0.5       0.18   12.5   0.5    1.2  1  FYDLN_acid       Protein of unknown function (FYDLN_acid)
       0.23   11.6   3.2       0.81    9.9   3.1    1.9  3  Zn-ribbon_8      Zinc ribbon domain
       0.25   11.1   2.1       0.72    9.6   0.1    2.0  1  zinc_ribbon_10   Predicted integral membrane zinc-ribbon meta
       0.26   11.9   2.9        3.7    8.1   0.6    2.1  2  Zn_ribbon_recom  Recombinase zinc beta ribbon domain
       0.53   10.1   2.7        9.7    6.0   0.3    2.2  2  Rubredoxin_2     Rubredoxin metal binding domain
        1.6    9.3   5.1         13    6.3   0.7    2.1  2  Ribosomal_L44    Ribosomal protein L44


Domain annotation for each model (and alignments):
>> DNA_RNApol_7kD  DNA directed RNA polymerase, 7 kDa subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   1.7   1.4e-19   1.4e-16       1      32 []      29      60 ..      29      60 .. 0.99

  Alignments for each domain:
  == domain 1  score: 59.9 bits;  conditional E-value: 1.4e-19
                    -B-SSS--B----SSS----SSS-----B--- CS
  DNA_RNApol_7kD  1 YiCgeCgaevslkkgdpiRCkeCGhRilYKkR 32
                    YiC+eC+++ sl+++dp+RCk+CGhRil K+R
      CCD26541.1 29 YICAECSSKLSLSRTDPVRCKDCGHRILLKAR 60
                    ******************************99 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0047       4.6       3      14 ..      29      40 ..      28      43 .. 0.84
   2 !    8.5   0.1    0.0015       1.5       3      14 ..      46      57 ..      44      61 .. 0.81

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0047
      zf_UBZ  3 ylCerCgkeipe 14
                y+C++C ++++ 
  CCD26541.1 29 YICAECSSKLSL 40
                9*****999875 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0015
      zf_UBZ  3 ylCerCgkeipe 14
                + C++Cg++i+ 
  CCD26541.1 46 VRCKDCGHRILL 57
                68********86 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.4   9.6e-06    0.0095      13      42 ..      29      59 ..      18      61 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 9.6e-06
         DZR 13 rfCseCgtklkavaa.edrCpsCgekvdpea 42
                  C eC +kl+   + + rC  Cg+ + ++a
  CCD26541.1 29 YICAECSSKLSLSRTdPVRCKDCGHRILLKA 59
                58*******9855558********9877666 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1    0.0058       5.8      25      36 ..      25      36 ..      18      38 .. 0.85
   2 ?    7.4   0.1     0.004       3.9      29      37 ..      46      54 ..      41      55 .. 0.83

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.0058
     TFIIS_C 25 mtvfykCtkCgh 36
                +t+ y C++C  
  CCD26541.1 25 ATLKYICAECSS 36
                6999******86 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.004
     TFIIS_C 29 ykCtkCghr 37
                ++C++Cghr
  CCD26541.1 46 VRCKDCGHR 54
                689999998 PP

>> HypA  Hydrogenase/urease nickel incorporation, metallochaperone, hypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.6   0.2   1.2e-05     0.012      63      95 ..      21      54 ..       3      68 .. 0.76

  Alignments for each domain:
  == domain 1  score: 15.6 bits;  conditional E-value: 1.2e-05
                EEEEE--EEEETTTS-EEECHHH.HHS-TTTSSS CS
        HypA 63 eieevpvkvrCreCgkefeleek.alrCpkCgsa 95
                + ++  +k+ C eC+++ +l+++  +rC++Cg++
  CCD26541.1 21 QARTATLKYICAECSSKLSLSRTdPVRCKDCGHR 54
                567788999**********8874489*****986 PP

>> MCM_OB  MCM OB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.7   0.2   2.1e-05     0.021      27      62 ..      21      54 ..      13      69 .. 0.76

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.1e-05
                EEEEEEEEEEETTT-.-EEES----SB-..TTT-HH CS
      MCM_OB 27 kpklkkavfeckkcgktveveleePrkCeekeCesk 62
                + +  ++++ c +c+++++++ ++P +C  k+C+++
  CCD26541.1 21 QARTATLKYICAECSSKLSLSRTDPVRC--KDCGHR 54
                56778899********999999******..99*953 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   0.4   2.5e-05     0.025       2      30 ..      30      59 ..      23      66 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 2.5e-05
                    --SSS-S--E.E-SSEEE-TTT--EEEEEE CS
  zinc-ribbons_6  2 kCpeCqqele.krgeqyhCeaCqedlkkea 30
                    +C eC ++l+ +r++ ++C+ C +++  +a
      CCD26541.1 30 ICAECSSKLSlSRTDPVRCKDCGHRILLKA 59
                    6*********9999********99877665 PP

>> IrmA  interleukin receptor mimic protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   8.1e-05     0.081      51      88 ..      11      48 ..       3      61 .. 0.85

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.1e-05
        IrmA 51 vmeveaFGdsdAtrkqeaflenEcvceenvsevevlka 88
                +++v+a G s+A   +  ++ +Ec+ + ++s+++ ++ 
  CCD26541.1 11 NLDVAAAGTSQARTATLKYICAECSSKLSLSRTDPVRC 48
                799**********************9999999876665 PP

>> Ribosomal_L40e  Ribosomal L40e family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   2.4   0.00011      0.11      15      44 ..      27      57 ..      21      65 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 0.00011
  Ribosomal_L40e 15 dKmiCrkCYArlpp.rAtnCrkkkCghsnnl 44
                     K iC  C ++l++ r+   r k Cgh   l
      CCD26541.1 27 LKYICAECSSKLSLsRTDPVRCKDCGHRILL 57
                    599*********9637778999*****7555 PP

>> DUF4428  Domain of unknown function (DUF4428)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.2    0.0015       1.5      21      31 ..      29      39 ..      24      47 .. 0.83
   2 ?    3.6   0.1     0.062        62      23      30 ..      48      55 ..      43      68 .. 0.75

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.0015
     DUF4428 21 yvCkdClkKls 31
                y+C +C +Kls
  CCD26541.1 29 YICAECSSKLS 39
                9********94 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.062
     DUF4428 23 CkdClkKl 30
                CkdC  ++
  CCD26541.1 48 CKDCGHRI 55
                ****9998 PP

>> Zn_ribbon_SprT  SprT-like zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1    0.0034       3.4      21      37 ..      23      41 ..      18      42 .. 0.78
   2 ?   11.8   1.9   0.00017      0.17       4      33 ..      28      54 ..      25      58 .. 0.90
   3 ?    3.1   0.7      0.09        90       6      22 ..      47      61 ..      46      64 .. 0.64

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0034
  Zn_ribbon_SprT 21 rrhn..YrCrrCkgtLrgk 37
                    r+++  Y+C  C ++L+++
      CCD26541.1 23 RTATlkYICAECSSKLSLS 41
                    566677******9999876 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00017
  Zn_ribbon_SprT  4 vYrCtgCgreythhlsirrhnYrCrrCkgt 33
                    +Y C  C       + +r+   rC+ C+ +
      CCD26541.1 28 KYICAECS---SKLSLSRTDPVRCKDCGHR 54
                    79999999...****************976 PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.09
  Zn_ribbon_SprT  6 rCtgCgreythhlsi.rr 22
                    rC +Cg   +++l + r+
      CCD26541.1 47 RCKDCG---HRILLKaRT 61
                    566777...777766555 PP

>> DUF2197  Uncharacterized protein conserved in bacteria (DUF2197)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.2    0.0084       8.4      31      42 ..      28      39 ..      23      45 .. 0.83
   2 ?    6.2   0.2     0.013        13      34      47 ..      48      61 ..      41      67 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.7 bits;  conditional E-value: 0.0084
     DUF2197 31 tYmCkeCeeRia 42
                 Y+C eC+++++
  CCD26541.1 28 KYICAECSSKLS 39
                5*******9985 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.013
     DUF2197 34 CkeCeeRiaektke 47
                Ck+C +Ri  k ++
  CCD26541.1 48 CKDCGHRILLKART 61
                *******9765543 PP

>> FYDLN_acid  Protein of unknown function (FYDLN_acid)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   0.00018      0.18       9      41 ..      28      60 ..      22      70 .] 0.79

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00018
  FYDLN_acid  9 KriCpscgakFYDLnk.dPivcpkcgeefepeev 41
                K iC +c++k   L + dP+ c  cg+ + +++ 
  CCD26541.1 28 KYICAECSSKL-SLSRtDPVRCKDCGHRILLKAR 60
                899*******7.67777*********99888766 PP

>> Zn-ribbon_8  Zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.053        53      27      34 ..      28      36 ..      20      43 .. 0.62
   2 ?    9.9   3.1   0.00081      0.81       5      34 ..      28      53 ..      25      58 .. 0.71
   3 ?    7.4   0.5    0.0048       4.8       7      14 ..      47      54 ..      45      64 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.053
  Zn-ribbon_8 27 ta.CPeCgs 34
                 +  C eC s
   CCD26541.1 28 KYiCAECSS 36
                 444555555 PP

  == domain 2  score: 9.9 bits;  conditional E-value: 0.00081
  Zn-ribbon_8  5 eYrCeeCghefevlqsisdaplta.CPeCgs 34
                  Y C eC ++    +      +++ C++Cg+
   CCD26541.1 28 KYICAECSSKLSLSR----T-DPVrCKDCGH 53
                 599999996666443....2.4455****97 PP

  == domain 3  score: 7.4 bits;  conditional E-value: 0.0048
  Zn-ribbon_8  7 rCeeCghe 14
                 rC++Cgh+
   CCD26541.1 47 RCKDCGHR 54
                 8999*997 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00072      0.72      37      53 ..      21      37 ..      14      38 .. 0.77

  Alignments for each domain:
  == domain 1  score: 9.6 bits;  conditional E-value: 0.00072
  zinc_ribbon_10 37 keeleevkyrCpkCgal 53
                    + + +++ky+C++C ++
      CCD26541.1 21 QARTATLKYICAECSSK 37
                    6677888*******876 PP

>> Zn_ribbon_recom  Recombinase zinc beta ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.054        53       7      18 ..      30      41 ..      26      45 .. 0.80
   2 ?    8.1   0.6    0.0038       3.7       6      18 ..      46      58 ..      43      67 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.4 bits;  conditional E-value: 0.054
  Zn_ribbon_recom  7 rCgeCGspmtrr 18
                     +C+eC s+++ +
       CCD26541.1 30 ICAECSSKLSLS 41
                     8******99765 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0038
  Zn_ribbon_recom  6 lrCgeCGspmtrr 18
                     +rC++CG++   +
       CCD26541.1 46 VRCKDCGHRILLK 58
                     79******96444 PP

>> Rubredoxin_2  Rubredoxin metal binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.1     0.033        33       1       8 [.      29      36 ..      29      39 .. 0.87
   2 ?    6.0   0.3    0.0098       9.7       2       8 ..      47      53 ..      47      55 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.033
  Rubredoxin_2  1 YvCsqCGf 8 
                  Y+C +C++
    CCD26541.1 29 YICAECSS 36
                  99****86 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.0098
  Rubredoxin_2  2 vCsqCGf 8 
                  +C++CG+
    CCD26541.1 47 RCKDCGH 53
                  7999998 PP

>> Ribosomal_L44  Ribosomal protein L44
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.3     0.025        25      50      63 ..      25      38 ..      20      44 .. 0.84
   2 ?    6.3   0.7     0.013        13      54      74 ..      46      68 ..      42      70 .] 0.82

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.025
                   --EEEEETTT--EE CS
  Ribosomal_L44 50 ivlrleCteCkkkr 63
                    +l++ C eC +k 
     CCD26541.1 25 ATLKYICAECSSKL 38
                   589*******9986 PP

  == domain 2  score: 6.3 bits;  conditional E-value: 0.013
                   EEETTT--EEE--..--BBS--E CS
  Ribosomal_L44 54 leCteCkkkrlka..lkRakkfe 74
                   ++C++C++++l++  +kR+ +fe
     CCD26541.1 46 VRCKDCGHRILLKarTKRMVQFE 68
                   58*******99885568888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       601  (0.0335211); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 511.10
//
Query:       CCD26542.1  [L=540]
Description: hypothetical protein NDAI_0H03690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   50.9   0.2    3.2e-13   49.7   0.2    1.6  1  AMPK1_CBM  Glycogen recognition site of AMP-activated protein


Domain annotation for each model (and alignments):
>> AMPK1_CBM  Glycogen recognition site of AMP-activated protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.2   1.8e-17   3.2e-13       2      80 ..       8      92 ..       7      96 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.7 bits;  conditional E-value: 1.8e-17
   AMPK1_CBM  2 ptvikWkggGkkVyvtGsfnnWkkkipLkkse..kdfsvilkL....peGthqykFiVDgewrvdpdlptatdeeGnlnNvievk 80
                +++++W+ g ++V +tG+f++Wk ++p++k++  k+f++ + +    p  + ++kFiVDg w+++++ + + + eG  nN+i+++
  CCD26542.1  8 SYKFQWPAGPESVVLTGQFDHWKGSLPMVKNGttKSFELEMPIkfdrPTQKIHFKFIVDGVWTTSDSYKREINYEGIENNFISMD 92
                679**************************655225555544332222566778****************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2597  (0.144849); expected 358.6 (0.02)
Passed bias filter:                      527  (0.0293937); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        51  (0.00284455); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.47u 0.40s 00:00:01.87 Elapsed: 00:00:00.57
# Mc/sec: 2863.45
//
Query:       CCD26543.1  [L=617]
Description: hypothetical protein NDAI_0H03700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
  ------ inclusion threshold ------
       0.24   11.3   1.6       0.44   10.4   1.6    1.3  1  Rick_17kDa_Anti  Glycine zipper 2TM domain


Domain annotation for each model (and alignments):
>> Rick_17kDa_Anti  Glycine zipper 2TM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.6   2.5e-05      0.44      17      38 ..     434     455 ..     432     456 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 2.5e-05
  Rick_17kDa_Anti  17 igggggrvlGavvGAaaGavaG 38 
                       ggg+++  G+++G ++G++ G
       CCD26543.1 434 SGGGNNKNKGTIIGSIVGSIGG 455
                      5889**************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1615  (0.0900775); expected 358.6 (0.02)
Passed bias filter:                      431  (0.0240393); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.83u 0.29s 00:00:01.11 Elapsed: 00:00:00.44
# Mc/sec: 4186.97
//
Query:       CCD26544.1  [L=209]
Description: hypothetical protein NDAI_0H03710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      1e-71  239.8   2.6    1.5e-71  239.3   2.6    1.3  1  SHR3_chaperone   ER membrane protein SH3
  ------ inclusion threshold ------
      0.022   14.0   0.2      0.029   13.6   0.2    1.1  1  Phage_HK97_TLTM  Tail length tape measure protein
      0.071   13.6   3.9       0.67   10.4   0.1    2.6  2  DUF202           Domain of unknown function (DUF202)


Domain annotation for each model (and alignments):
>> SHR3_chaperone  ER membrane protein SH3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.3   2.6   2.4e-75   1.5e-71       2     183 ..       7     188 ..       6     208 .. 0.95

  Alignments for each domain:
  == domain 1  score: 239.3 bits;  conditional E-value: 2.4e-75
  SHR3_chaperone   2 lssvataliigstsFflGvlfanfpyDynlLwssesteeafdaalehykflhaspplikrilhiviglgliglliklykpsednllFdgaSLvLy 96 
                     +++++tali++s+sF++G++f+n++yDy+lL++ ++t+e+fd+al+hy++l+ + + + +il  v++lgl+g +i++ykp+++ ++F++aSL+Ly
      CCD26544.1   7 FCTIGTALILISSSFIMGTFFNNLTYDYHLLFNPNVTQEHFDNALRHYQTLYYTGRPLLYILAGVAILGLLGNMIRIYKPNPELKMFEYASLGLY 101
                     79********************************************************************************************* PP

  SHR3_chaperone  97 vvgvvvyitnivkglrtvtegawgevdredslkvlaasntilalvLvGVlvLQaGqwYaerkeqeeleefeeeeaeeaaakaeekak 183
                     v+g++++itni++g++++ +g+wgev+++++l+v+++sn+il+l+++GVl+LQ+G+wY+++++qe+l++f++eea++ +  a+++ak
      CCD26544.1 102 VFGICIFITNIKTGIECSLNGNWGEVTQNQGLAVIGSSNIILLLMFLGVLILQIGLWYTNYDYQERLKDFYAEEAKDISIVAASRAK 188
                     ***************************************************************************987665555544 PP

>> Phage_HK97_TLTM  Tail length tape measure protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   4.8e-06     0.029      26      87 ..     148     208 ..     132     209 .] 0.80

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 4.8e-06
  Phage_HK97_TLTM  26 pGlvilaAGafYllYqkqkqAresAreyAkeieevkeklkklsleevadekdklkeslkeqn 87 
                       G++il  G +Y+ Y+ q+  ++   e Ak+i  v +   k  +e    +++k +++l+++n
       CCD26544.1 148 LGVLILQIGLWYTNYDYQERLKDFYAEEAKDISIVAASRAKP-IETESKKQQKKNKKLAKKN 208
                      69**********************9999***99888765553.3444455666778888877 PP

>> DUF202  Domain of unknown function (DUF202)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00011      0.67      16      62 ..      12      83 ..      10      86 .. 0.80
   2 ?    3.0   0.1     0.023   1.4e+02      17      32 ..     142     157 ..     139     190 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
      DUF202 16 tslalialglallrffl.................tgepsa...........lgkilglilivlgiltllvglvry 62
                t+l li+ ++ +  ff+                 ++   +           +g++l +il++++il ll  ++r 
  CCD26544.1 12 TALILISSSFIMGTFFNnltydyhllfnpnvtqeHF---DnalrhyqtlyyTGRPLLYILAGVAILGLLGNMIRI 83
                99*************999******999888865522...13345555555569***************9998886 PP

  == domain 2  score: 3.0 bits;  conditional E-value: 0.023
      DUF202  17 slalialglallrffl 32 
                  l+l++lg+++l++ l
  CCD26544.1 142 ILLLMFLGVLILQIGL 157
                 5889999999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1400  (0.0780858); expected 358.6 (0.02)
Passed bias filter:                      641  (0.0357521); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 1537.39
//
Query:       CCD26545.1  [L=306]
Description: hypothetical protein NDAI_0H03720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-43  146.7   0.1    6.5e-43  146.1   0.1    1.3  1  Ras       Ras family
      5e-18   65.5   0.0    2.3e-17   63.3   0.0    2.1  1  Roc       Ras of Complex, Roc, domain of DAPkinase
    8.7e-05   22.0   0.5    0.00023   20.6   0.5    1.7  1  Arf       ADP-ribosylation factor family
    0.00013   21.5   0.1    0.00048   19.7   0.1    1.8  1  GTP_EFTU  Elongation factor Tu GTP binding domain


Domain annotation for each model (and alignments):
>> Ras  Ras family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.1   0.1   1.5e-46   6.5e-43       3     160 ..       7     197 ..       5     199 .. 0.96

  Alignments for each domain:
  == domain 1  score: 146.1 bits;  conditional E-value: 1.5e-46
                 EEEESTTSSHHHHHHHHHHSSCSSSCTTTSSEEEEEEEEEET...........TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTH CS
         Ras   3 vlvGdsavGKtslllrfvkdkFkeeyesTigvdfytkeievd...........gkevkleiwDTAGqeefkslrelyyrdaegillvyditsresfenv 90 
                  +vGd+++GKtsll+++++++F+++y +T+ +d+y+++++v+           ++  k+++wDTAGqee+++lr+l+y +++ +l++++i++  sf+n+
  CCD26545.1   7 TVVGDGSTGKTSLLISYTTNTFPQDYVPTV-FDNYSTNLSVSdpfpnskssleKQVFKMNLWDTAGQEEYDTLRPLSYPQTDIFLICFAINDIISFNNI 104
                 69****************************.**********99*****999988899****************************************** PP

                 H.HHHHHHHHHST..........TTSEEEEEEETTTGGG...........G-SS-HHHHHHHHHHHT.SEEEEEBTTTTCTHHHHHHHHHHHH CS
         Ras  91 k.kwveeikrvae..........envpivLvGnKvDlee...........kravsteegeelakelg.lkfletSAktnenveeafeellrei 160
                 k +w+ ei +  +          +++pi+LvG+K+D++            ++ v++e+ e+l ke+g l ++e+SA t+ +v+++fe++++ +
  CCD26545.1 105 KnRWIPEILNNLTqshlkkyeqsNKYPILLVGTKSDIKYennnnnnnnnnNKIVTKEDIETLIKEHGlLGYIECSALTQVGVKDVFEKAVQLV 197
                 *99*****99888889999999989************9999********9999**************99*******************99865 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   5.1e-21   2.3e-17       4     119 ..       8     140 ..       5     141 .. 0.71

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 5.1e-21
                 EESSTTSSHHHHHHCHCT-CCC-EEETTTTEEEEEEECGGSG...GCTTBTTTTCEEEEEEEE-SGGCTTTT-HHHHCTSCEEEEEEE...GHHHHCH. CS
         Roc   4 lvGdsgvGKtsllkrfvedkfsekekstigvdfltkevtkik...gvendkkvkkvklniWDtaGqerfrslhplylreaalailvyd...srssenl. 95 
                 +vGd+++GKtsll ++++++f +++ +t+  +++t+  +  +   + +++ +++ +k+n+WDtaGqe++++l+pl + + +++++++      s++n+ 
  CCD26545.1   8 VVGDGSTGKTSLLISYTTNTFPQDYVPTVFDNYSTNLSV-SDpfpNSKSSLEKQVFKMNLWDTAGQEEYDTLRPLSYPQTDIFLICFAindIISFNNIk 105
                 89***************************9999885432.22111334444556699****************************99732244778873 PP

                 HHHHHHHHHH.........CSSS..-EEEEEE-TT CS
         Roc  96 keWlkelkkv.........agks..pvilvgnkiD 119
                 ++W+ e+ ++          +++  p++lvg+k D
  CCD26545.1 106 NRWIPEILNNltqshlkkyEQSNkyPILLVGTKSD 140
                 56998775441111121112221237788888877 PP

>> Arf  ADP-ribosylation factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.5   5.2e-08   0.00023      15     173 ..       4     195 ..       1     197 [. 0.70

  Alignments for each domain:
  == domain 1  score: 20.6 bits;  conditional E-value: 5.2e-08
                 EEEEEEESTTSSHHHHHHHHHHSSCEE.CSSSSSEEEEE.EEE.............TTEEEEEEEE-SSGGGGGGGGGGCTTESEEEEEEETT-CTTHH CS
         Arf  15 lrilllGLDnaGKtTilkklkleelvt.tvPTigfnvee.lei.............knlkftvwDvGGqeklRplWknYfektdavifvvDsadreRle 98 
                 + + ++G  ++GKt +l  ++++ + +  vPT+  n  + l++             + +k+++wD  Gqe+   l    +++td  + +   +d   ++
  CCD26545.1   4 ITCTVVGDGSTGKTSLLISYTTNTFPQdYVPTVFDNYSTnLSVsdpfpnsksslekQVFKMNLWDTAGQEEYDTLRPLSYPQTDIFLICFAINDIISFN 102
                 66788999999************9976599**988865426667788888888886889***********999999999*****987777666666665 PP

                 HHHHH.....HHHHCTS.....GCCTTSEEEEEEE-TTSTTSS-HHHHHH...HTTGGG.....SSSSSSEEEEEEBTTTTBTHHHHHHHHHH CS
         Arf  99 eakee.....Lkallee.....eelkevallvlaNKqDlpealseeelre...llglee.....lkgkrkleiqkcsavkgeglkeglewlse 173
                 + k+      L++l+++     e+ ++ ++l+++ K D++   ++++ ++   ++  +e     +k +  l  ++csa+++ g+k+ +e+ ++
  CCD26545.1 103 NIKNRwipeiLNNLTQShlkkyEQSNKYPILLVGTKSDIKYENNNNNNNNnnnKIVTKEdietlIKEHGLLGYIECSALTQVGVKDVFEKAVQ 195
                 5554321112444433211111555599**********9876655443320002323336666666677788899*********999998665 PP

>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1   1.1e-07   0.00048      58     191 ..      52     196 ..       1     198 [. 0.78

  Alignments for each domain:
  == domain 1  score: 19.7 bits;  conditional E-value: 1.1e-07
                 CEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEEEETTTB..............STHHHHHHHHHHHHTTTE.EEEEEESCGSTHHHHHH CS
    GTP_EFTU  58 saaisleketkkylinliDtPGHvdFskevirglrvlDgavlvvdaveG..............vepqteevlrlalkegvp.iivfiNKmDrlkaelke 141
                  +  sle  ++ +++nl Dt G +++      ++ ++D+ ++ +++++                ++ t+ +l+   + +   i ++ +K D   ++ ++
  CCD26545.1  52 NSKSSLE--KQVFKMNLWDTAGQEEYDTLRPLSYPQTDIFLICFAINDIisfnniknrwipeiLNNLTQSHLKKYEQSNKYpILLVGTKSDIKYENNNN 148
                 4455666..999***********************************6666666777777777************9998873555669*****999999 PP

                 HHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHHHHHHHHHH CS
    GTP_EFTU 142 iveevkqklsrkeeklekygekgekevpvvfgSalkgegvktllealvel 191
                   ++ ++k+  ++e++e    ++      + +Sal++ gvk+++e  v+l
  CCD26545.1 149 NNNNNNNKI-VTKEDIETLIKEH-GLLGYIECSALTQVGVKDVFEKAVQL 196
                 999999898.6677787776555.489****************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1452  (0.0809861); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2238.77
//
Query:       CCD26546.1  [L=222]
Description: hypothetical protein NDAI_0H03730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-06   26.8   0.0    7.5e-06   25.7   0.0    1.7  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom
     0.0018   18.3   0.0     0.0068   16.5   0.0    1.9  2  RRM_7     RNA recognition motif
  ------ inclusion threshold ------
      0.074   12.8   0.4        0.1   12.4   0.4    1.2  1  DUF410    Protein of unknown function (DUF410)
        1.6    7.6   4.5        1.9    7.3   4.5    1.1  1  LMBR1     LMBR1-like membrane protein


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.7e-09   7.5e-06       1      69 [.      75     137 ..      75     138 .. 0.91

  Alignments for each domain:
  == domain 1  score: 25.7 bits;  conditional E-value: 1.7e-09
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEETTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrdetgkskgfafVeFeskedAekAlealngkklggrel 69 
                 +fVg+Lp+d+t  e+  +F+   p  +i+l +d     kg+af eF+ + d + + ++++   l++r+l
  CCD26546.1  75 VFVGGLPRDITPTEIQSHFKSSSPD-HIRLRSD-----KGIAFLEFDAEKDKTGIQRRMDVALLQHRTL 137
                 8********************9988.9******.....***********99999888888887777776 PP

>> RRM_7  RNA recognition motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.5e-06    0.0068       4      26 ..      75      97 ..      73     110 .. 0.89
   2 ?   -1.9   0.0      0.87   3.9e+03      46      61 ..     103     118 ..      95     125 .. 0.79

  Alignments for each domain:
  == domain 1  score: 16.5 bits;  conditional E-value: 1.5e-06
       RRM_7  4 vFvGGlPiDiteeelkatfkefg 26
                vFvGGlP Dit +e+++ fk+ +
  CCD26546.1 75 VFVGGLPRDITPTEIQSHFKSSS 97
                9******************9865 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.87
       RRM_7  46 skaakgyvflvfedek 61 
                  ++ kg +fl f++ek
  CCD26546.1 103 LRSDKGIAFLEFDAEK 118
                 4678999999999887 PP

>> DUF410  Protein of unknown function (DUF410)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.4   2.3e-05       0.1      36      95 ..     160     219 ..     158     222 .] 0.77

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 2.3e-05
      DUF410  36 evyekaevevdeeskdrliellskfpaeeperkkfikaaikwSakkgekkaGdpeLhhll 95 
                 e ++k+++++dee+k+rl++l++  +++++e  + ++aa   S+++++ +  +p+  +ll
  CCD26546.1 160 EKLNKKNIKLDEERKERLTKLIKDSAQKKSEHASSAHAASGDSSSTTTVRGLHPDRAKLL 219
                 779********************8777777888888888777777776666666555555 PP

>> LMBR1  LMBR1-like membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.5   0.00043       1.9     198     301 ..       3     184 ..       1     213 [. 0.70

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.00043
       LMBR1 198 ldeelkklyfeaaklntekeeaereledllkevkklrksisesdplrkyleeilk.................................kvPeeiaeklk 263
                  +++l k +++a++ +++k+e e++   +l+e k+ ++si+e++      ee lk                                  +P+ei+++ k
  CCD26546.1   3 EEKKLTKKQLKAQQFKKSKDEREQDKI-KLEEEKTKKRSIEEEQ------EEPLKkkrktrrgrkgkgkngtgggnrfivfvgglprdITPTEIQSHFK 94 
                 5678999999******99999888888.6777777777777777......4555556667778999999999999999999**99999999*9999999 PP

       LMBR1 264 s.......................................................nenkteeslaklekqlikalqkrertekqwkrlleka 301
                 s                                                       ++ +++++l kl+k+ ik    +er+e++  +l++  
  CCD26546.1  95 SsspdhirlrsdkgiaflefdaekdktgiqrrmdvallqhrtllkekrinveltvgGGGNSKDRLEKLNKKNIKLD--EERKERL-TKLIKDS 184
                 9999999999999999998888888888888877777777777777777776666644455556666665544432..2222222.2222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2396  (0.133638); expected 358.6 (0.02)
Passed bias filter:                      646  (0.036031); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.55u 0.29s 00:00:00.84 Elapsed: 00:00:00.42
# Mc/sec: 1605.36
//
Query:       CCD26547.1  [L=920]
Description: hypothetical protein NDAI_0H03740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.1e-46  156.5   0.1    1.7e-45  155.4   0.1    1.6  1  Pkinase      Protein kinase domain
      8e-18   64.7   0.0    1.7e-17   63.6   0.0    1.5  1  Pkinase_Tyr  Protein tyrosine kinase
  ------ inclusion threshold ------
       0.14   12.1   0.1       0.24   11.3   0.1    1.3  1  APH          Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.4   0.1   2.9e-49   1.7e-45       1     264 []     498     824 ..     498     824 .. 0.88

  Alignments for each domain:
  == domain 1  score: 155.4 bits;  conditional E-value: 2.9e-49
                 EEEEEEEEEESSEEEEEEEET.TTTEEEEEEEEECHCHCHHHH....HHHHHHHHHHHHHSCTTB--EEEEEEE.........SSEEEEEEE--TTEBH CS
     Pkinase   1 yekleklGeGsfGkVykavek.etgkivAvKkikkekakkkke....kkvlrEikilkklkhpnivrlyevfee.........kdelylvleyveggel 85 
                 y ++++lG+G++G+V  + +k +++  +A+K+++k+ ++k+++    +++++E  i  +l+hpni++ +e ++e         + +++ ++ey++ + l
  CCD26547.1 498 YIEINELGSGASGSVKLIQRKnDDSVVYAMKQFRKRVISKETKrdyiRTITSEYCIGINLNHPNIIKTLELIYEnddktdcsnELRICQIMEYCSYD-L 595
                 567899*********9887651556689**********99999999999**********************9999999999877788899*****88.6 PP

                 HHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.....BCTTTSCGGGS-HHHHTTSCB.SHHH CS
     Pkinase  86 adllerkgslseeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.....ltsfvgtseYlAPEvlkeney.skkv 178
                 + +   +   + +e+  ++kq+++g++ylHs g++HrDlK eN  i++ g lKi+DFG a  ++   +     ++ + g+  Yl+PEv + ++y  ++v
  CCD26547.1 596 FAITM-SDYATYDEICCYFKQLMNGVNYLHSIGLCHRDLKLENCVINDYGILKIIDFGAAVVFQYPCSmnlieASGILGSDPYLPPEVYHFTHYdPRPV 693
                 65554.56899999*********************************99***************998889999999******************7789* PP

                 HHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHT...HHHHHHHCTSHH...HHHTTS......................................... CS
     Pkinase 179 DvWslGvilyelltgkppfsgekgkekvekeldq...lekilkilgetkeklpeasei......................................... 233
                 D+Ws+++i+++++ +k p++  k +++  k++       +++++l++ ++ ++++++                                          
  CCD26547.1 694 DIWSCAIIFVCMVLKKFPWKIPKLTDESFKMFCMgreSNSLIELLTKPNLRVKNKKNGssslsndsdtssvelesyiedetysiddnnvhigklrvlha 792
                 ********************776555544444331225555566655455555555447788999********************************** PP

                 .-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase 234 .seeakdllkkllkkdpkkRltaeellqhpyl 264
                  +ee++ ++ k+l+  p++R t +e+l+++++
  CCD26547.1 793 iPEECQPMIGKMLELAPTRRATLREILEDSWI 824
                 ******************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   2.9e-21   1.7e-17       5     196 ..     502     703 ..     499     729 .. 0.81

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 2.9e-21
                  EEEEEESSEEEEEEEEETTTTSSEEEEEEEEEST.....TSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSS.........EEEEEE--TTEBH CS
  Pkinase_Tyr   5 kklGeGafGkVvegtlkgekekkevkVavKtlke.....eateeekeelleeakimkklkhpnivkllgvctkeep.........llivteyvkgGdL 88 
                  ++lG+Ga G+V   + k   ++++v  a+K++++     e++++  + +++e+ i  +l+hpni+k l ++++++          ++ ++ey+++  +
   CCD26547.1 502 NELGSGASGSVKLIQRK---NDDSVVYAMKQFRKrviskETKRDYIRTITSEYCIGINLNHPNIIKTLELIYENDDktdcsnelrICQIMEYCSYDLF 596
                  78*********999888...6677777888775411111444444678899*******************9944444677777779999999999777 PP

                  HHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEET.TT.SSEEEETTSSTSGGGGS-HHHHHHSEEEH CS
  Pkinase_Tyr  89 lkfLrkkekekltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardi.ek.ddeyvkkeeaklpvkWmapEslkekkfts 184
                     + +      t+++++++  q+ +G++yL+s  l Hrdl   N+++++  + ki DfG a    +  + +  ++++   +  +++pE+ + +++  
   CCD26547.1 597 AITMSDY----ATYDEICCYFKQLMNGVNYLHSIGLCHRDLKLENCVINDYGILKIIDFGAAVVFqYPcSMNLIEASGILGSDPYLPPEVYHFTHYDP 690
                  6666665....9************************************************999883331344477777778899***********986 PP

                  H.HHHHHHHHHHH CS
  Pkinase_Tyr 185 k.sDvWsfGvllw 196
                  +  D+Ws +++  
   CCD26547.1 691 RpVDIWSCAIIFV 703
                  538****998765 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   4.1e-05      0.24     165     197 ..     625     655 ..     611     657 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 4.1e-05
                 -EEEE-SS-SGGGEEEC..TTEEEEE---TT-E CS
         APH 165 ptvllHgDlhpgNllvdpddgrvtGviDfedag 197
                 + +l+H+Dl++ N +++  d  +  +iDf+ a+
  CCD26547.1 625 SIGLCHRDLKLENCVIN--DYGILKIIDFGAAV 655
                 568**************..555558****9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1714  (0.0955993); expected 358.6 (0.02)
Passed bias filter:                      308  (0.0171789); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.72u 0.25s 00:00:00.97 Elapsed: 00:00:00.40
# Mc/sec: 6973.13
//
Query:       CCD26548.1  [L=1166]
Description: hypothetical protein NDAI_0H03750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-61  207.0   0.1    2.2e-59  201.1   0.1    2.4  1  ELFV_dehydrog    Glutamate/Leucine/Phenylalanine/Valine dehyd
    1.5e-18   65.9   0.2    4.1e-12   44.5   0.0    2.1  2  Bac_GDH          Bacterial NAD-glutamate dehydrogenase
     0.0013   18.6   0.0     0.0093   15.8   0.0    2.2  2  ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation 
  ------ inclusion threshold ------
      0.034   14.0   0.0       0.28   11.1   0.0    2.5  2  Cadherin_2       Cadherin-like


Domain annotation for each model (and alignments):
>> ELFV_dehydrog  Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.1   0.1     5e-63   2.2e-59       1     243 []     753    1060 ..     753    1060 .. 0.83

  Alignments for each domain:
  == domain 1  score: 201.1 bits;  conditional E-value: 5e-63
                     T--.TTTTTHHHHHHHHHHHHHHHHTTTS-STTEEEEEE--.SHHHHHHHHHHHHCT-EEEEEEESSEEEEETTEE-HHHHHHHHHCSSSSTTH CS
  ELFV_dehydrog    1 GGs.ldrpeaTglGvvyyveemlkklkldslegkrvaisGs.GnvgsyaallltelgakvvavsDssGviydpeGldieellelkeerksvkey 92  
                     GG+ +d++++T+lGv+++v++m+++l+l++   ++++++G+ G++gs+++ll+t+ ++ +v+++D+sGvi+dp Gld++el +l+++r +v++y
     CCD26548.1  753 GGIpHDEYGMTSLGVRAFVNKMYETLNLNDSVIHKFQTGGPdGDLGSNEILLSTD-NEIYVGIVDGSGVICDPMGLDKNELFKLAHKRLMVSHY 845 
                     9****************************************************87.************************************** PP

                     SHH.........STSTSE.EESHHSHH..............HHS..S-SEEEE-.SSTTSB-HHHHTHTH.....HTT-SEEE-SSSS-B-HHH CS
  ELFV_dehydrog   93 kks.........sekkae.yieneeel..............lel..kvdilvPc.Atqneideenakali.....kngvklvvEgANlpttqeA 154 
                     +++         s+++++ +++n++ +              +++  +vd++vPc +++n+i+ +n++ +i     k++++++vEgANl++ q+A
     CCD26548.1  846 DNTkfsksgfyvSVTDMDlMLPNGTIVangttfrntfhtqiFRFvdHVDLFVPCgGRPNSISLSNLHFFIdektgKSKIPYIVEGANLFIAQAA 939 
                     *989999999987778888888885558777777665544422268*********************9999999989***************** PP

                     HHHHHHTT-EEE-HHHHTTHHHHHHHHHHHHHHCT----HHHHHHHHHHH.......................................HHHHH CS
  ELFV_dehydrog  155 keileeagvlvvpdkaaNaGGVtvSslEmlqnlarlswteeevdeklkki.......................................mkeif 209 
                     k  le++g+++++d++aN+GGVt+SslE+l++la    +++++++k+  +                                        ++++
     CCD26548.1  940 KIELEKHGCILFKDASANKGGVTSSSLEVLASLAL---SDNDFVNKFIGKknntlqarsiprtdgsldeiiesneidndsiqedddneeRTALY 1030
                     ********************************777...99999999998867777777777766666666665555555555544322222223 PP

                     HHHHHHHHHCT-THHHHHHHHHHHHHHHHHHHCT CS
  ELFV_dehydrog  210 kavveeaeeykqelvkganiagfekvaeamkaqG 243 
                     k++v e++      +++++ a+f+++++ ++ +G
     CCD26548.1 1031 KSYVVEVQA----RIQKNAEAEFNQLWKINQSTG 1060
                     333333222....777777777777777777666 PP

>> Bac_GDH  Bacterial NAD-glutamate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   9.1e-16   4.1e-12     575     743 ..     447     625 ..     386     831 .. 0.82
   2 !   19.3   0.2   3.7e-08   0.00016    1059    1125 ..     927     993 ..     918    1098 .. 0.75

  Alignments for each domain:
  == domain 1  score: 44.5 bits;  conditional E-value: 9.1e-16
     Bac_GDH 575 gfnrLvleagltwrevavlrayakYlrQigl.tfsqeyieetllkhpeiarllvelFearfdpaleeeeeeeee..........ekleeeieeaLde.v 661
                 ++ +L+ + +++ ++ ++l  +++  + ++  tf+qe+i ++l k+++i+++l++ F +    + e+++ e++            +  +e+e+ L++ +
  CCD26548.1 447 EYQTLISQISVRENDTVLLEVITNLKKKLRNeTFTQEMIIDVLHKYSKIVSKLYKNFAQLHYLQDENKKLEKTLsfkrlasiepFANDQEFETYLNKfI 545
                 6889999999999999999999999999865279***********************999988888777666558999*99988777889999999846 PP

     Bac_GDH 662 asldedrilrrlleli.eatlRtnfyqkdedgeakeyislKldpski.pelPePrPlfEi.fVysprvegvHLRggkvARGGlRW 743
                  + + d ++ + l+l  +++++tnf+ +     +k  is++l+ps i p++  P+  f + fV  +++ g H+R+ +++RGG+R 
  CCD26548.1 546 PNDSPDLLILQTLNLFnKSIVKTNFFIT-----RKVAISFRLNPSLImPKIEYPETPFGVfFVVGNTFKGFHIRFREISRGGIRI 625
                 67777877777777762689******99.....6899********98589999*866665279*********************5 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 3.7e-08
     Bac_GDH 1059 vgEGgNLGltQlgRiEyalkggrintDaiDNsaGVdcSDhEVNiKilLnklvaegeltlkqRnklLa 1125
                  + EG+NL ++Q ++iE  ++g  +  Da  N +GV +S  EV   ++L++    +++  k+ n+l a
  CCD26548.1  927 IVEGANLFIAQAAKIELEKHGCILFKDASANKGGVTSSSLEVLASLALSDNDFVNKFIGKKNNTLQA 993 
                  89****************************************8888777666555665555555554 PP

>> ELFV_dehydrog_N  Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.1e-06    0.0093      31      99 ..     615     692 ..     604     706 .. 0.86
   2 ?   -0.7   0.0      0.27   1.2e+03      73      92 ..     818     837 ..     816     854 .. 0.87

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 2.1e-06
                      TTSSEEEEEEEETT--HH...........HHHHHHHHHHHHHHHTTSS-EEEEEEEES-GGGS-HHHHHHHHHHHHHHHG CS
  ELFV_dehydrog_N  31 algPakGGiRfhpsvnld...........evkaLaalmtyKnalvdlpfGGakggvkidpkklseeeleritrrfvrela 99 
                       ++  +GGiR+  s ++d           e  +La+ +  Kn   d+p GG+kg++ ++p   ++++  +++ ++v++++
       CCD26548.1 615 FREISRGGIRIVCSKTQDifdmnsktvidENYQLASTQQRKN--KDIPEGGSKGVILLNPGLFEPDQTFNAFSQYVDAII 692
                      46667899999999999999999999888999**********..9*******************************9987 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.27
                      EEEES-GGGS-HHHHHHHHH CS
  ELFV_dehydrog_N  73 ggvkidpkklseeeleritr 92 
                      +gv++dp +l+++el ++ +
       CCD26548.1 818 SGVICDPMGLDKNELFKLAH 837
                      5889***********99875 PP

>> Cadherin_2  Cadherin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.69   3.1e+03      39      61 ..     170     192 ..     160     194 .. 0.85
   2 ?   11.1   0.0   6.2e-05      0.28      15      52 ..     603     640 ..     595     642 .. 0.93

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.69
                 ESTSSSSEEEETTTTEEEESS-- CS
  Cadherin_2  39 skgnkqllqlnletgdLlvkekl 61 
                  +++ q  ql++e  dL++ +kl
  CCD26548.1 170 NDDEDQPYQLDQEIDDLFLDNKL 192
                 56788999***********9987 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 6.2e-05
                 EEEEHHHHTTS-HHHHHHTTBEEEESTSSSSEEEETTT CS
  Cadherin_2  15 fvgnlakdLgLeveeLaargarvvskgnkqllqlnlet 52 
                 +vgn  k + ++ +e+++ g+r+v+++ ++++++n++t
  CCD26548.1 603 VVGNTFKGFHIRFREISRGGIRIVCSKTQDIFDMNSKT 640
                 79*********************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1166 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       924  (0.0515366); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.75u 0.28s 00:00:01.03 Elapsed: 00:00:00.39
# Mc/sec: 8980.69
//
Query:       CCD26549.1  [L=502]
Description: hypothetical protein NDAI_0H03760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-29  102.0   0.2    5.4e-29  100.6   0.2    1.8  1  JAB       JAB1/Mov34/MPN/PAD-1 ubiquitin protease
    0.00041   20.1   0.0    0.00089   19.0   0.0    1.5  1  Prok-JAB  Prokaryotic homologs of the JAB domain
  ------ inclusion threshold ------
      0.018   15.1   0.5       0.33   11.0   0.0    2.9  3  UPF0172   Uncharacterised protein family (UPF0172)
      0.085   12.6   0.1       0.24   11.1   0.1    1.7  1  S_100     S-100/ICaBP type calcium binding domain


Domain annotation for each model (and alignments):
>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.2   1.2e-32   5.4e-29       2     117 ..      87     216 ..      86     217 .. 0.96

  Alignments for each domain:
  == domain 1  score: 100.6 bits;  conditional E-value: 1.2e-32
                 SSCEEEEEHHHHHHHHHHHHHHHHHTS--EEEEEEEESSSEEEEEEEEEEESEEEESSECEEEEEHHHHHHHHHHHHHHHC................TT CS
         JAB   2 svqavhleslvllkildhalrtekeeeevmGlliGelnddttveitnvfalpfeetekdvdavsldqeylekksellkklr................gr 84 
                  ++ v +++l++ kil+h lr++    e+mG+l+G++++   + + ++++lp+e+te++v+a+ +++ey+ +++++++ +                  +
  CCD26549.1  87 YFEMVLISKLACIKILNHSLRGGDI--EIMGMLVGTVQGT-KLIVYDCYELPVEGTETRVNAQLESYEYMVQYMDEIIHTGgsrnttstydssstntRN 182
                 57889********************..*************.999***********************************99***************945 PP

                 .SEEEEEEEESSSS-SS--HHHHHHHHHHHHHST CS
         JAB  85 .ervvGWYhshpditvwlsevdvrtqalyqrmde 117
                  ++++GWYhshp++++wls++dv+tq+l+q++++
  CCD26549.1 183 iLNIIGWYHSHPGYDCWLSNIDVQTQELNQNFQD 216
                 5*****************************9986 PP

>> Prok-JAB  Prokaryotic homologs of the JAB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     2e-07   0.00089       7      91 ..     100     207 ..      95     233 .. 0.75

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 2e-07
    Prok-JAB   7 alvaharrahpeEtcGlllgkeseseevivvplvnewsn.............rfeipdpedslarlkf.........................earerg 67 
                 +++ h +r    E  G+l+g+  +  + iv+++++ +++             +              +                           +++ 
  CCD26549.1 100 KILNHSLRGGDIEIMGMLVGTV-QGTKLIVYDCYELPVEgtetrvnaqlesyE--------------YmvqymdeiihtggsrnttstydsssTNTRNI 183
                 678899999*************.9**********9888866666555555552..............344444455555555777777888889999** PP

    Prok-JAB  68 levvgiwHSHpggsarPSetDrrd 91 
                 l+++g +HSHpg     S  D ++
  CCD26549.1 184 LNIIGWYHSHPGYDCWLSNIDVQT 207
                 ***********9776666666665 PP

>> UPF0172  Uncharacterised protein family (UPF0172)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   7.4e-05      0.33       4      44 ..      93     131 ..      90     157 .. 0.90
   2 ?   -0.7   0.0      0.29   1.3e+03      71     116 ..     181     225 ..     169     250 .. 0.62
   3 ?   -0.0   0.1      0.17   7.8e+02      80     140 ..     376     437 ..     375     478 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 7.4e-05
     UPF0172   4 vssqAYvKlllHaaKyptqaVnGvLlgkkssskskvevtDa 44 
                 +s+ A +K+l H+++    +++G+L+g+ + +k  + v D+
  CCD26549.1  93 ISKLACIKILNHSLRGGDIEIMGMLVGTVQGTK--LIVYDC 131
                 7999************************99988..899998 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.29
     UPF0172  71 ekglvivGyYqanerlsdtelsslaekiadkiaenfs.davllvvdn 116
                 ++ l+i+G+Y+++  + d  ls++  + ++++++nf+   v++vvd 
  CCD26549.1 181 RNILNIIGWYHSHPGY-DCWLSNIDVQ-TQELNQNFQdPYVAIVVDP 225
                 4568899999986543.4444443333.3455666663345555555 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.17
     UPF0172  80 Yqanerlsdtelsslaek.iadkiaenfsdavllvvdnkkleseseeeallalykkdsl.gkw 140
                 Y+an + +d++++   +k i   i++ + ++v  + d ++++++++++  + l++++++ ++ 
  CCD26549.1 376 YIANRSDNDSDIDISNTKsIDGGIES-MTSSVYTMRDTNTVSAANTTTSPSFLHTRQTSlDNS 437
                 89999999999988555526667766.555888888988887755444443455554432222 PP

>> S_100  S-100/ICaBP type calcium binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   5.3e-05      0.24      22      37 ..       6      21 ..       2      24 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 5.3e-05
                TTSEEHHHHHHHHHHH CS
       S_100 22 kdtLsKkELkeLlekE 37
                 ++Ls +ELk+L+ekE
  CCD26549.1  6 LSSLSLAELKQLIEKE 21
                579************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      345  (0.0192426); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.36
# Mc/sec: 4156.63
//
Query:       CCD26550.1  [L=195]
Description: hypothetical protein NDAI_0H03770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.2e-37  125.8   4.5    1.2e-36  125.5   4.5    1.1  1  Tim17            Tim17/Tim22/Tim23/Pmp24 family
  ------ inclusion threshold ------
       0.11   11.7   0.5       0.25   10.4   0.0    1.7  2  Serine_protease  Gammaproteobacterial serine protease


Domain annotation for each model (and alignments):
>> Tim17  Tim17/Tim22/Tim23/Pmp24 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5   4.5   1.3e-40   1.2e-36       1     111 []      44     174 ..      44     174 .. 0.97

  Alignments for each domain:
  == domain 1  score: 125.5 bits;  conditional E-value: 1.3e-40
       Tim17   1 cvyktglsgvlGallGavfglvkgsrradtp..................apskerlreglrsvgkrgpslGknfgvvgglysgiecaleklRgkediwn 81 
                 c +k+++sgv G++lG+v gl+++s+++dtp                  +p+k++++ +++++gkr++s++knfg++g++y+g+ec++e+lR+k+di+n
  CCD26550.1  44 CPGKSIISGVTGFALGGVLGLFMASMAYDTPlhtplaggvtanvqqmadLPLKQQVKLQFADMGKRSYSSAKNFGYIGMIYAGVECVVESLRAKNDIYN 142
                 78999********************************************************************************************** PP

       Tim17  82 svaAGaltGall..ragpqaaavgaiggaafs 111
                 +v+AG++tG+ l  ++gpqaa++g+ g+a+fs
  CCD26550.1 143 GVTAGCITGGGLayKSGPQAALMGCGGFALFS 174
                 *********887446***************97 PP

>> Serine_protease  Gammaproteobacterial serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1     0.096   8.6e+02     138     184 ..      41      86 ..      32      91 .. 0.68
   2 ?   10.4   0.0   2.8e-05      0.25     134     188 ..      98     155 ..      92     165 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.096
  Serine_protease 138 tsggfgsrslaGfvnFaalgvvedeiakflkindelynkllaGalsG 184
                      +++  g   ++G+  Fa  gv++  +a++  +++ l   l++G+++ 
       CCD26550.1  41 MTSCPGKSIISGVTGFALGGVLGLFMASM-AYDTPLHTPLAGGVTAN 86 
                      44444556788999998888888777764.56777777777777765 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 2.8e-05
  Serine_protease 134 lwkLtsggfgsrslaGfvnFaalgvve...deiakflkindelynkllaGalsGviAt 188
                       +kL  +  g rs +   nF  +g++    + + + l+ ++++yn ++aG ++G   +
       CCD26550.1  98 QVKLQFADMGKRSYSSAKNFGYIGMIYagvECVVESLRAKNDIYNGVTAGCITGGGLA 155
                      689999******************99533367899****************9996555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       462  (0.0257683); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 1468.85
//
Query:       CCD26551.1  [L=540]
Description: hypothetical protein NDAI_0H03780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.2e-22   77.8  10.4    1.4e-05   25.0   0.2    7.4  8  Arm       Armadillo/beta-catenin-like repeat
    7.9e-16   58.3   3.6    9.6e-16   58.0   2.0    2.1  2  IBB       Importin beta binding domain
    2.8e-06   26.8   0.7    3.9e-05   23.1   0.1    2.6  2  Arm_3     Atypical Arm repeat


Domain annotation for each model (and alignments):
>> Arm  Armadillo/beta-catenin-like repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.4e-07   0.00084       3      32 ..     141     171 ..     139     173 .. 0.92
   2 !   13.1   0.2   1.3e-05     0.077       3      40 ..     184     221 ..     182     222 .. 0.96
   3 ?    0.3   0.0      0.14   8.1e+02      22      38 ..     243     262 ..     237     264 .. 0.78
   4 !   25.0   0.2   2.3e-09   1.4e-05      13      39 ..     280     306 ..     274     307 .. 0.94
   5 !    9.2   0.0   0.00022       1.3      10      40 ..     319     350 ..     313     351 .. 0.89
   6 ?    1.6   0.0     0.052   3.1e+02       5      40 ..     401     436 ..     397     436 .. 0.83
   7 !    8.0   0.1   0.00052       3.1       4      27 ..     443     469 ..     440     478 .. 0.79
   8 ?   -3.3   0.0       1.9   1.1e+04      13      32 ..     505     524 ..     498     525 .. 0.66

  Alignments for each domain:
  == domain 1  score: 19.3 bits;  conditional E-value: 1.4e-07
                 HHHHHHHHTTHHHHHHHHTT.TSSHHHHHHH CS
         Arm   3 enkdavieaGavppLvrLLs.sedeevqeeA 32 
                 + ++a+i+ G++p+L+++L+ s ++++q eA
  CCD26551.1 141 QTIQAIIDTGIIPRLINFLDiSNSDMLQLEA 171
                 679************************9998 PP

  == domain 2  score: 13.1 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   3 enkdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 e+++a+ ea ++p L++L    ++++q++A   ++N++
  CCD26551.1 184 EQTQALAEASIMPNLLDLVLQSNVNIQKQAFMIIGNIC 221
                 89*****************************9999999 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.14
                 T...TSSHHHHHHHHHHHHH CS
         Arm  22 s...sedeevqeeAawALsN 38 
                 +   ++d ++ + A++AL+ 
  CCD26551.1 243 KvfqNDDISLIQIAVCALCK 262
                 444499***********975 PP

  == domain 4  score: 25.0 bits;  conditional E-value: 2.3e-09
                 HHHHHHHHTTTSSHHHHHHHHHHHHHH CS
         Arm  13 avppLvrLLssedeevqeeAawALsNL 39 
                 ++p+Lv+L+++   ++ e+A+w+Ls+L
  CCD26551.1 280 ILPILVDLIDCSELDIIEDACWTLSYL 306
                 79************************9 PP

  == domain 5  score: 9.2 bits;  conditional E-value: 0.00022
                 HTTHHHHHHHHTT.TSSHHHHHHHHHHHHHHT CS
         Arm  10 eaGavppLvrLLs.sedeevqeeAawALsNLa 40 
                 +  ++++L++LL+ s++++ q +++ +L+  +
  CCD26551.1 319 QNHCIKRLLKLLTvSTKVTFQLPILYCLRRFC 350
                 788**********************9999766 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.052
                 HHHHHHTTHHHHHHHHTTTSSHHHHHHHHHHHHHHT CS
         Arm   5 kdavieaGavppLvrLLssedeevqeeAawALsNLa 40 
                 ++a+i    vp + + Lss   ++++e++  LsN++
  CCD26551.1 401 TMAIILEDLVPEFTKILSSAPYKTKTEVCFILSNIT 436
                 566664458999*****************9999996 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.00052
                 HHHHHHHTTHHHHHHHHTT...TSSHH CS
         Arm   4 nkdavieaGavppLvrLLs...sedee 27 
                    ++i+ ++++ L+++L+   +ed++
  CCD26551.1 443 LVSYLISNNCIKSLCQFLEianNEDVR 469
                 5789***************95555554 PP

  == domain 8  score: -3.3 bits;  conditional E-value: 1.9
                 HHHHHHHHTTTSSHHHHHHH CS
         Arm  13 avppLvrLLssedeevqeeA 32 
                  + +L ++ +s++ee+ + A
  CCD26551.1 505 TISALFNCSQSDNEEISTRA 524
                 56666667778888886655 PP

>> IBB  Importin beta binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   2.0   1.6e-19   9.6e-16       1      88 [.      31     127 ..      31     129 .. 0.83
   2 ?   -2.3   0.0         1   6.1e+03      48      48 ..     148     148 ..     133     213 .. 0.61

  Alignments for each domain:
  == domain 1  score: 58.0 bits;  conditional E-value: 1.6e-19
                 XXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......................XXXXXXXXXXXX-----TT--------HH CS
         IBB   1 RlksfKnkgk.daeelRrrReeeqvelRKqkreeqllKrRnvaaeaaaeeeadseeee...........eessaeekkleeleemvqgvnSddpelqle 87 
                 R++sfK k +  ++el++r +++qvelRK+kr+e ++++R +  +++++e +ds+  +            e+ ++++++e l+  v++++S+d +lqle
  CCD26551.1  31 RKTSFKDKDRfTSHELKKRNVKHQVELRKRKRDELIAQKRAYVPNMSEPE-SDSD--TdyslsqeqsiiLETVMTNQLEEVLPLYVEKIHSNDLQLQLE 126
                 89****************************************66322222.2222..2235677778996688999**********************9 PP

                 H CS
         IBB  88 a 88 
                 +
  CCD26551.1 127 G 127
                 6 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1
                 . CS
         IBB  48 e 48 
                 +
  CCD26551.1 148 D 148
                 1 PP

>> Arm_3  Atypical Arm repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.064   3.8e+02      19      35 ..     201     217 ..     189     222 .. 0.86
   2 !   23.1   0.1   6.5e-09   3.9e-05      14      41 ..     507     534 ..     496     539 .. 0.87

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.064
       Arm_3  19 LQnheneeIYkkAlkIi 35 
                 L    n++I k+A+ Ii
  CCD26551.1 201 LVLQSNVNIQKQAFMII 217
                 6667899*********9 PP

  == domain 2  score: 23.1 bits;  conditional E-value: 6.5e-09
       Arm_3  14 dkIeaLQnheneeIYkkAlkIiekYFse 41 
                   + ++ +++neeI   A+++iekYFs 
  CCD26551.1 507 SALFNCSQSDNEEISTRAVNLIEKYFSN 534
                 5678999*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1149  (0.0640861); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.26s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3774.56
//
Query:       CCD26552.1  [L=221]
Description: hypothetical protein NDAI_0H03790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       522  (0.0291148); expected 358.6 (0.02)
Passed bias filter:                      214  (0.011936); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 1701.26
//
Query:       CCD26553.1  [L=354]
Description: hypothetical protein NDAI_0H03800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-26   93.5  11.6    1.8e-26   92.9  11.6    1.3  1  MARVEL     Membrane-associating domain
     0.0089   17.0   7.5       0.11   13.5   1.4    3.9  3  DUF4834    Domain of unknown function (DUF4834)
  ------ inclusion threshold ------
      0.071   13.9   6.7      0.046   14.5   3.4    2.1  2  HXXEE      Protein of unknown function with HXXEE motif
       0.59   10.4   6.9       0.55   10.5   3.3    2.1  2  DUF1761    Protein of unknown function (DUF1761)
        1.7    7.4   6.5       0.61    8.9   0.9    2.1  2  LptF_LptG  Lipopolysaccharide export system permease LptF/Lpt
        6.7    6.5  10.9         47    3.8  10.9    2.0  1  Amastin    Amastin surface glycoprotein


Domain annotation for each model (and alignments):
>> MARVEL  Membrane-associating domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9  11.6   6.2e-30   1.8e-26       6     144 .]      61     218 ..      58     218 .. 0.93

  Alignments for each domain:
  == domain 1  score: 92.9 bits;  conditional E-value: 6.2e-30
      MARVEL   6 lgilrilqlvfaiiilgliasliakldqllgspssalnfavfvavfsflyalfllvlylfknsaftsilwplidlivdalaallwlvafialaaglrdi 104
                 l+ lril+++ ++++++l a +i   +++ ++ + ++nfa++v+v+s +y l+ ++ +l    +++++ +  ++li++a+++llwl+afi++a+ ++ +
  CCD26553.1  61 LTTLRILEFASSVLVFSLLAFAI---HDYNDHGNHKTNFALAVGVISTFYLLAVFLGTL----LMPQFVFAGVLLIAEAIVCLLWLCAFIVIAKTVGEH 152
                 5679*******************...666799999***************999999988....9*********************************** PP

      MARVEL 105 sca........................fe..snqysasltvrcgqaqaavafgflavllfaasavl 144
                 sc+                        +   ++++ +++ ++c+ +++a+af+ +a++lf+++++l
  CCD26553.1 153 SCSnsrvnqynpaygsissfqqsggtyNPytGEYTTSNYHRACNTSKTAIAFAGFAFVLFVITCIL 218
                 *******************99988775226788999999*************************97 PP

>> DUF4834  Domain of unknown function (DUF4834)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.7      0.22   6.7e+02      39      59 ..      29      49 ..       6      63 .. 0.52
   2 ?    2.2   0.0      0.12   3.5e+02       9      63 ..     129     185 ..     100     201 .. 0.45
   3 !   13.5   1.4   3.5e-05      0.11       5      93 ..     206     347 ..     202     349 .. 0.64

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.22
     DUF4834 39 sksaqkqfgnstnsnqqksqs 59
                 +++q+q gn+  ++q+ +++
  CCD26553.1 29 GQNQQQQPGNQGYGKQTMTTA 49
                123333333333333333333 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.12
     DUF4834   9 ifiiailviglsilsvilrtvfg....lgsrkkssksaqkqfgnstnsnqqksqsrset 63 
                 i   +++++ l    vi +tv g      sr ++  + + ++ +s++++   ++  + +
  CCD26553.1 129 IAEAIVCLLWLCAFIVIAKTV-GehscSNSRVNQ-YNPAYGSISSFQQSGGTYNPYTGE 185
                 222222233333333344444.422111112221.233333333333333333333333 PP

  == domain 3  score: 13.5 bits;  conditional E-value: 3.5e-05
     DUF4834   5 lfi.lifiiailviglsilsvilrtv....................................................fglgsrkkssksaqkqfgnst 50 
                 +f  ++f+i+++++gl +l  i+r++                                                    +         ++a ++++n++
  CCD26553.1 206 GFAfVLFVITCILLGLNVLKPIVRNFggqglwkdgsyigsklqrftglaldkplgntynvdmepgvvgtgvpaadqhtM---------STAGESTTNAY 295
                 55548999******************************99999999999999999999999999985544333222220.........24444455555 PP

     DUF4834  51 nsnqqksq............srsetkeegeiieeersekeakrkkiFekdeGEYV 93 
                  ++++ ++            +++++++ +++ ++ +++++ ++ +     e EYV
  CCD26553.1 296 DQEKYGNDgarsavtgstaeQQPQHHTYQTEATQPTTRTQVQH-Q--VRTEEEYV 347
                 5555555566666666544333333332333333333333333.2..24566666 PP

>> HXXEE  Protein of unknown function with HXXEE motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.5   3.4   1.5e-05     0.046       4      95 ..      78     165 ..      75     172 .. 0.69
   2 ?   -0.2   0.1      0.56   1.7e+03      69      81 ..     202     214 ..     183     237 .. 0.54

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.5e-05
       HXXEE   4 lllfllHqfEEiilfpnwlkknkesefavavaee..filvlvlvvnallvwlilalallakrepllglallafllvn..lltHiaqalvlksYnPG 95 
                 ll+f++H++  +         n++++fa+av ++  f+l++v+  + l+ ++++a  ll    ++  l+l+af+++   +  H  ++ ++++YnP+
  CCD26553.1  78 LLAFAIHDYNDHG--------NHKTNFALAVGVIstFYLLAVFLGTLLMPQFVFAGVLLIAEAIVCLLWLCAFIVIAktVGEHSCSNSRVNQYNPA 165
                 799*********9........2233355555555216666666666666655545555566777777778888888777558*************6 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.56
       HXXEE  69 lallafllvnllt 81 
                 +a+++f++v++++
  CCD26553.1 202 IAFAGFAFVLFVI 214
                 2222333333221 PP

>> DUF1761  Protein of unknown function (DUF1761)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.3   0.00018      0.55      41     121 ..      55     146 ..      37     150 .. 0.82
   2 ?    1.1   0.1      0.15   4.5e+02      71      93 ..     196     218 ..     178     225 .. 0.72

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00018
     DUF1761  41 enk....alamglslvlslliayvlaallaalga.......rtfkagallglllglgfiapaiisnalfekkslklvlIdagywlvtllvmg 121
                 ++     ++  +l+++ s+l+  +la+ + ++++         ++ g++  ++l + f  + ++ + +f++  l   +I +  wl +++v++
  CCD26553.1  55 AEHpallTTLRILEFASSVLVFSLLAFAIHDYNDhgnhktnFALAVGVISTFYLLAVFLGTLLMPQFVFAGVLLIAEAIVCLLWLCAFIVIA 146
                 33344556777899999999999*********9999998766688888889999999********************************997 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.15
     DUF1761  71 rtfkagallglllglgfiapaii 93 
                 +t k ++ ++ ++++ f++++i+
  CCD26553.1 196 NTSKTAIAFAGFAFVLFVITCIL 218
                 67777777777777777777775 PP

>> LptF_LptG  Lipopolysaccharide export system permease LptF/LptG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.9    0.0002      0.61     278     349 ..      69     141 ..      21     146 .. 0.76
   2 ?    1.5   0.5     0.035   1.1e+02       8      38 ..     204     235 ..     200     255 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0002
   LptF_LptG 278 lplaclvfaliaaplglvkrrggrglrlliaillfvlyyvllslgkalaengvlpp.ilaawlpnilflllgl 349
                 ++ ++lvf l+a+++  ++  g+  +++++a++++  +y+l  ++ +l   + + + +l +  +++++l l++
  CCD26553.1  69 FASSVLVFSLLAFAIHDYNDHGNHKTNFALAVGVISTFYLLAVFLGTLLMPQFVFAgVLLIAEAIVCLLWLCA 141
                 6779****************************99999887777777777766664414444444444444444 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.035
   LptF_LptG   8 lkpfllvllvllfllllqdllr.yldllvgkg 38 
                 +  f++vl+v++ +ll+ ++l+ ++++++g+g
  CCD26553.1 204 FAGFAFVLFVITCILLGLNVLKpIVRNFGGQG 235
                 67899999999999999999983455664444 PP

>> Amastin  Amastin surface glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  10.9     0.016        47      63     147 ..      95     218 ..      88     224 .. 0.69

  Alignments for each domain:
  == domain 1  score: 3.8 bits;  conditional E-value: 0.016
     Amastin  63 raaqafsiisilvlaaalllsvllllccsslkwvclllnivsvvtllivwalmvavyykrfCd..alksttakyga....................... 136
                 + a a+ +is + l+a +l  +l+      +  v+l+  ++  ++ l+   +++++  ++ C   ++++ + +yg+                       
  CCD26553.1  95 NFALAVGVISTFYLLAVFLGTLLMPQF--VFAGVLLIAEAIVCLLWLCAFIVIAKTVGEHSCSnsRVNQYNPAYGSissfqqsggtynpytgeyttsny 191
                 5678999****9999988888887765..5666666666666666666667778888899996356666666666666666666666667777777777 PP

     Amastin 137 ................GFgLlvvawll 147
                                 +F+L+v+ ++l
  CCD26553.1 192 hracntsktaiafagfAFVLFVITCIL 218
                 777777777777776677777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       984  (0.0548832); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.57u 0.27s 00:00:00.84 Elapsed: 00:00:00.43
# Mc/sec: 2463.72
//
Query:       CCD26554.1  [L=151]
Description: hypothetical protein NDAI_0H03810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-52  178.0   0.1    1.6e-52  177.9   0.1    1.0  1  Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase


Domain annotation for each model (and alignments):
>> Tyr_Deacylase  D-Tyr-tRNA(Tyr) deacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.9   0.1   8.8e-57   1.6e-52       1     144 []       2     148 ..       2     148 .. 0.98

  Alignments for each domain:
  == domain 1  score: 177.9 bits;  conditional E-value: 8.8e-57
                    EEEEEEEEEEEEEETTEEEEEESSEEEEEEE-BTT--HHHHHHHHHHHHH-EEEEETTSS..EEEETTTTT-EEEEEE-GGGGSBTSSSSS-BGTT CS
  Tyr_Deacylase   1 raviqrvksAsvtvegevvgsigkGllvlvgvekedteedleklakkilnlrifedeegk..mnlsvkdvggevLvVsqftLyadtrkGrrpsfhk 94 
                    r+v+q+v++Asv ve+e+v++i++G+++lvg+++edt ed++kl +k+l+lr+fed++g+  +++++k+v+ge+L +sqftLya+t+kG++p+fh 
     CCD26554.1   2 RIVLQKVSQASVVVEKEIVSTIKHGYMLLVGISTEDTIEDINKLSNKVLTLRVFEDSTGEnfWKQNIKQVEGEILSISQFTLYAKTKKGTKPDFHM 97 
                    89******************************************************988889********************************** PP

                    B--HHHHHHHHHHHHHHHHHCTC.TTEEE--TTS-EEEEEEEEEEEEEEEE CS
  Tyr_Deacylase  95 aakpeeaeelyekfveklrerlg.ekvetGeFgadmkvslvndGPvtilld 144
                    a k++ a+ely+kf+++lr++lg +kv++G+Fga+m+ sl+n+GPvti+ld
     CCD26554.1  98 AQKGHIAKELYDKFLDSLRANLGqDKVKDGQFGAMMSCSLTNEGPVTIILD 148
                    ********************877588***********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.24s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1151.08
//
Query:       CCD26555.1  [L=1027]
Description: hypothetical protein NDAI_0H03820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-84  283.1  13.3    1.1e-84  283.1  13.3    3.1  2  CDC13_N          Cell division control protein 13 N-terminus
    1.6e-12   47.4   3.5    7.8e-12   45.2   1.0    3.3  3  POT1             Telomeric single stranded DNA binding POT1/C
    1.5e-09   38.0   0.8    5.2e-09   36.2   0.3    2.3  2  Cdc13_OB4_dimer  Cdc13 OB4 dimerization domain


Domain annotation for each model (and alignments):
>> CDC13_N  Cell division control protein 13 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.1  13.3   1.9e-88   1.1e-84       1     208 [.       4     253 ..       4     254 .. 0.99
   2 ?    2.2   0.7     0.018   1.1e+02       3      53 ..     555     611 ..     550     661 .. 0.79

  Alignments for each domain:
  == domain 1  score: 283.1 bits;  conditional E-value: 1.9e-88
                 S-EE-SSGGGGGGS-SSEEEEEEEEEEEEEEEE-SSE.EEEEEE--SSSS--STSEEEEEE-......................-SHHHHHHHHHHHHH CS
     CDC13_N   1 slkyitspseleklpskekikveFvslLTsikytksekclLelqnFengkeaespYrvklkc......................knseserlarmtisl 77 
                 s+k+its+sel+klp++eki+++F+slLT+ik+++s+++lLelq+F+ng +a spYrvk+k+                      +ns+s++larmtisl
  CCD26555.1   4 SCKFITSISELKKLPTAEKISIRFISLLTGIKFNGSNSFLLELQDFPNGVPALSPYRVKIKYnstndklksdtaaateqtttteNNSSSFKLARMTISL 102
                 69************************************************************************************************* PP

                 HHHHTT-----ST---....-EEE--GGGT---EEEEEEEEEEETTEEEEEEEEEEE--HHHHHHHTHH-------................HHHHHHH CS
     CDC13_N  78 lcqkfdldipeldses....tfiledihlekLCfvkckglyvsneeksslyledikpldlssaiklatekkeklss................kktiski 156
                 lcq+fd+di+e+d+++    +f++++ihlek+Cf++ck++yvsn+eksslyl+d+kp+d+s+aik+at++k++++s                +k is+i
  CCD26555.1 103 LCQFFDIDINEFDINEkkkePFFIDEIHLEKICFIDCKCIYVSNGEKSSLYLDDVKPIDISTAIKYATQDKRQPVSttstadttndddhvirDKLISNI 201
                 **************999999*******************************************************9*********************** PP

                 HHHHHHHHHSTTSS--GGGSTT--HHHHHHHHHHCTTTXXXXXXXXXSXXSX CS
     CDC13_N 157 fdnLikldkdskseFkfvkLenydtelkefiqerqeklleekkkknplFsln 208
                 f+nLi++d+d+ks+F+fvkL+n+++elkefiqer+ kl+eekk++nplF+++
  CCD26555.1 202 FNNLIMIDNDIKSDFNFVKLANFNNELKEFIQERKLKLMEEKKRSNPLFFFG 253
                 *************************************************987 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.018
                 EE-SSGGGGGGS-SSEEE......EEEEEEEEEEEEE-SSE.EEEEEE--SSSS--S CS
     CDC13_N   3 kyitspseleklpskeki......kveFvslLTsikytksekclLelqnFengkeae 53 
                 ++i+s ++ + ++++ +       ++    lL s+++++s+ + + + +F++++ ++
  CCD26555.1 555 QFIKSDNDPKIFFNELRLnpgdmkYITMFGLLVSLTFENSSYVSMVFTDFTKNNIEQ 611
                 6777777766666555555554457888889**********999******7665433 PP

>> POT1  Telomeric single stranded DNA binding POT1/CDC13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1      0.86   5.1e+03     114     133 ..     265     284 ..     212     289 .. 0.58
   2 !   45.2   1.0   1.3e-15   7.8e-12      12     139 ..     578     717 ..     569     719 .. 0.91
   3 ?   -0.4   0.0      0.16   9.5e+02      22      62 ..     850     893 ..     845     896 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.86
                 CCCCCSTSTTCCCCSHCCHH CS
        POT1 114 letppilsskffelskeekk 133
                  e + ++ s+ff+l + +++
  CCD26555.1 265 MESQIAFNSQFFTLRDSDSS 284
                 56666777777777777766 PP

  == domain 2  score: 45.2 bits;  conditional E-value: 1.3e-15
                 EEEEEEEEEEEEEECCCSCCEEEEECCCCCTTT...............SCCHCTTTEEEEEEEECCCCCCCCGGCCCCEEECCCCEEEESTTSCECCSE CS
        POT1  12 kvvnviGvVidasfpkktggsdyvctfkivDps...............knkgdendglrvvlFsknfedLpivkkvgdiirlhraklqsyngepqglan 95 
                 k+++++G++++ +f+     s ++++f++++++                 ++d+n+g+rv++++++f+++++  +v  i+ +    l++   e++++++
  CCD26555.1 578 KYITMFGLLVSLTFEN---SSYVSMVFTDFTKNnieqkylfdsylvdtMRRLDSNEGFRVMMYQDHFRSFNE--NVTSIYGMDFHGLKKSWTENYSKYG 671
                 89***********944...34444555577777777************************************..9************************ PP

                 EEEEEE..CCCTTSCEEEEECCCCCSTSTTCCCCSHCCHHHHHHHH CS
        POT1  96 igfsss..walFngnlnailletppilsskffelskeekkylkdlr 139
                 i +++s  ++ F g+lnai + + pil s+  +lsk e+ +l++++
  CCD26555.1 672 IVCKISlsCKFFKGKLNAISRVCIPILQSNYLNLSKREQFILEKIY 717
                 ***************************************9999886 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.16
                 EEEECCCSCCEEEEECCCCCTTT...SCCHCTTTEEEEEEEECC CS
        POT1  22 dasfpkktggsdyvctfkivDps...knkgdendglrvvlFskn 62 
                 d++ p kt  + ++ ++++ D++   ++ +++ + lr+ +F+++
  CCD26555.1 850 DTRNPGKTMITYLCLLITVRDHNeelETMIENRKLLRIEMFKEE 893
                 778888999999***********998888899999999999875 PP

>> Cdc13_OB4_dimer  Cdc13 OB4 dimerization domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.4   1.4e+04      62      90 ..      72     100 ..      60     102 .. 0.72
   2 !   36.2   0.3   8.6e-13   5.2e-09      39     114 .]     875     962 ..     859     962 .. 0.77

  Alignments for each domain:
  == domain 1  score: -3.8 bits;  conditional E-value: 2.4
                      HHSSS---GGGCGGGBTSEEEEEEEE... CS
  Cdc13_OB4_dimer  62 FlgdeealedilraLvlktlkfrllrgkv 90 
                       ++d +a +++ +   ++ + f+l+r ++
       CCD26555.1  72 LKSDTAAATEQTTTTENNSSSFKLARMTI 100
                      55666777888888888999999998766 PP

  == domain 2  score: 36.2 bits;  conditional E-value: 8.6e-13
                      -T--B-GGG-EEEEEESHHHHHHHHSS...S......---GGGCGGGBTSEEEEEEEE...EE...-----BEEEEESS--HHHHHHH CS
  Cdc13_OB4_dimer  39 lkkkvdpkeiLkveilGkenvnyFlgd...e......ealedilraLvlktlkfrllrgkvkl...skttsiltWcPvECtleeLklq 114
                      l+ +++ +++L++e++ +e +nyFl +   +      + + d l++ v++t++f + ++  +l   s+++++l+WcPvE t+ee+k+q
       CCD26555.1 875 LETMIENRKLLRIEMFKEETINYFLNKsayNnydntvDVSLDRLQNFVGETFQFMVTKAPFQLqlrSRSINLLVWCPVEFTMEEMKSQ 962
                      578899******************974122112212224678899************998776333467899**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1027 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1304  (0.0727313); expected 358.6 (0.02)
Passed bias filter:                      341  (0.0190195); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.27s 00:00:01.00 Elapsed: 00:00:00.43
# Mc/sec: 7238.10
//
Query:       CCD26556.1  [L=300]
Description: hypothetical protein NDAI_0H03830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-43  147.3   5.9    5.9e-43  147.0   5.9    1.1  1  SUR7           SUR7/PalI family
     0.0075   15.7   2.0      0.012   15.0   0.8    1.8  2  DUF2417        Region of unknown function (DUF2417)
  ------ inclusion threshold ------
       0.03   14.3   5.1       0.06   13.3   5.1    1.5  1  Fig1           Ca2+ regulator and membrane fusion protein Fig
      0.057   13.3   0.4        0.1   12.5   0.4    1.4  1  InvH           InvH outer membrane lipoprotein
        0.1   12.6   0.4        2.5    8.2   0.0    2.4  2  Hum_adeno_E3A  Human adenovirus early E3A glycoprotein
        0.4   10.5  10.9      0.038   13.8   6.1    1.7  2  TatC           Sec-independent protein translocase protein (T
        7.2    6.9  11.1       0.11   12.7   2.4    2.3  3  DUF3784        Domain of unknown function (DUF3784)


Domain annotation for each model (and alignments):
>> SUR7  SUR7/PalI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   5.9   2.3e-46   5.9e-43       4     211 ..      10     204 ..       7     205 .. 0.97

  Alignments for each domain:
  == domain 1  score: 147.0 bits;  conditional E-value: 2.3e-46
        SUR7   4 illflslaalilllfailgsiknstpltsiylskfdlsgldlaqigladvysfgvwgyCdnsdvnytkCskpkagypfdpleelnsesngkvdlPsnlr 102
                 ++++++l+a +l+l+ i+++ ++   l+++y+++ d+ g+++a    ++++++  ++yC++++ +  +Cs+  a+ pf+p ++++s+ n    +Ps + 
  CCD26556.1  10 LSFLFLLGAGLLTLILIISGGRDGGILKNFYWFQGDTNGFNNA----PSTTRWFNYQYCGYENGQLMDCSSRGAAKPFSPRDNFGSSPN----MPSTFL 100
                 7899999999*********************************....******************************************....****** PP

        SUR7 103 ktlsklnnltkalfilhiialvlsfislvvgllaicvspdnsrllsflnlllsvlsflatllaalldtllfvfvrkkinlkefgikaslglkflafaWl 201
                 ++++++++l+k+++++++i++++++ ++v ++++++    ++ ++ f+++ +s+++f+++llaa+l+t+++v++rk++  ++ +++a++g k ++f+W+
  CCD26556.1 101 NNRDTYYYLSKVAWAMLLIGTAFTIFTIVPQFISFF---LHRNVTNFITMAFSWIAFFFLLLAACLYTGCYVKARKAF--HHDDRDAHMGAKNFGFIWA 194
                 ***********************************9...7888899********************************..******************* PP

        SUR7 202 alaaallvvi 211
                 ++a++l+++i
  CCD26556.1 195 SVALMLINSI 204
                 *******988 PP

>> DUF2417  Region of unknown function (DUF2417)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.8   4.7e-06     0.012      22     102 ..      88     168 ..      67     176 .. 0.81
   2 ?   -1.2   0.0      0.44   1.1e+03      82     105 ..     189     212 ..     182     230 .. 0.62

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 4.7e-06
     DUF2417  22 egy.lspddpavspynlwkvrnlrwilnilllinliwlvllLisdFvslpglnnrgsgFndlalillslianllnllf.fglp 102
                 + + +sp+ p+ + +n+ ++ +l  +   +lli + + +++++ +F+s + l+   + F  +a+  +++  +ll+     g +
  CCD26556.1  88 N-FgSSPNMPSTFLNNRDTYYYLSKVAWAMLLIGTAFTIFTIVPQFIS-FFLHRNVTNFITMAFSWIAFFFLLLAACLyTGCY 168
                 2.24889999999999999999999***********************.8889****************99988766545555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.44
     DUF2417  82 lalillslianllnllffglpSkl 105
                 + +i  s++ +l+n +  +++++l
  CCD26556.1 189 FGFIWASVALMLINSIATTVYAAL 212
                 555555555555555555555544 PP

>> Fig1  Ca2+ regulator and membrane fusion protein Fig1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   5.1   2.3e-05      0.06      88     183 ..     118     207 ..     103     211 .. 0.67

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.3e-05
        Fig1  88 LtlllfllllyfplgseipllPfkska..vskvalvlsflllllwlvgalwqhvassaastlveeasmgivkskvGkkaealgWfafaflllvclglw 183
                 L+   f + + +p     +++ f   +   + +++++s+++++++l++a + + + + a ++  +       +++G k  ++ W+++a++l++ ++  
  CCD26556.1 118 LIGTAFTIFTIVP-----QFISFFLHRnvTNFITMAFSWIAFFFLLLAACLYTGCYVKARKAFHHDDR---DAHMGAKNFGFIWASVALMLINSIATT 207
                 2222333333333.....2444433333489999*******988888776666665544444444444...68*******************998765 PP

>> InvH  InvH outer membrane lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.4     4e-05       0.1      64      95 ..     227     260 ..     216     280 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4e-05
        InvH  64 lsnhnadnsasknsaisssifcek..ykqtkeqa 95 
                 +s  + dnsa+ +s+i ss+f +k  +k+tk+q 
  CCD26556.1 227 MSYPEYDNSAAEKSTIGSSVFGKKkmFKKTKKQQ 260
                 667788***************9985567887774 PP

>> Hum_adeno_E3A  Human adenovirus early E3A glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.0      0.14   3.6e+02      26      67 ..     129     174 ..     112     178 .. 0.58
   2 ?    8.2   0.0   0.00096       2.5      38      75 ..     188     225 ..     183     237 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.14
  Hum_adeno_E3A  26 lpqvsafv..ndwas.ldmwwfsialmfvclii.mwlicclkrkra 67 
                    +pq  +f    + ++ + m +  ia++f+ l   ++  c +k ++a
     CCD26556.1 129 VPQFISFFlhRNVTNfITMAFSWIAFFFLLLAAcLYTGCYVKARKA 174
                    5555444312233331344444477777777541566677777776 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 0.00096
  Hum_adeno_E3A  38 sldmwwfsialmfvcliimwlicclkrkrarppiykpi 75 
                    ++++ w s+alm++  i   + ++l+++   p  y   
     CCD26556.1 188 NFGFIWASVALMLINSIATTVYAALHKRDNTPTAYDHS 225
                    67899***********************9999999765 PP

>> TatC  Sec-independent protein translocase protein (TatC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.2       1.6   4.2e+03      98     113 ..       5      20 ..       2      31 .. 0.67
   2 ?   13.8   6.1   1.5e-05     0.038      91     150 ..     101     161 ..      95     167 .. 0.82

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 1.6
                 HHHHHHHHHHHHHHHH CS
        TatC  98 vfliaslllfllGaaf 113
                 +f+   ++lfllGa +
  CCD26556.1   5 RFVNPLSFLFLLGAGL 20 
                 5566667777777765 PP

  == domain 2  score: 13.8 bits;  conditional E-value: 1.5e-05
                 --STTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTTTSSTTEEH.HHHHHHHHHHHHH CS
        TatC  91 herrlvlvfliaslllfllGaafayfvvlplvlkfllseevepllsl.seylsfvllllla 150
                 + r  ++ +  ++ ++ l+G af+ f ++p +++f+l+ +v++ +++  ++++f++lll a
  CCD26556.1 101 NNRDTYYYLSKVAWAMLLIGTAFTIFTIVPQFISFFLHRNVTNFITMaFSWIAFFFLLLAA 161
                 567777888889999**********************999988755415888888887765 PP

>> DUF3784  Domain of unknown function (DUF3784)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2         3   7.7e+03      52      60 ..      15      23 ..      10      39 .. 0.54
   2 ?   12.7   2.4   4.3e-05      0.11      38      91 ..     104     170 ..      94     173 .. 0.77
   3 ?   -1.0   0.1       0.8     2e+03      71      90 ..     191     210 ..     184     216 .. 0.63

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 3
     DUF3784 52 ligilflll 60
                l+g+ +l l
  CCD26556.1 15 LLGAGLLTL 23
                333222222 PP

  == domain 2  score: 12.7 bits;  conditional E-value: 4.3e-05
     DUF3784  38 dekklsrfmgivllligilflllgll............saiesealliiali.viiiiviylivyan 91 
                 d+  +  ++ +++llig++f ++ ++             ++ ++a+++ia++ +++++++y+  y++
  CCD26556.1 104 DTYYYLSKVAWAMLLIGTAFTIFTIVpqfisfflhrnvTNFITMAFSWIAFFfLLLAACLYTGCYVK 170
                 56667778999***********999999999999999966666666666555488999998887776 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.8
     DUF3784  71 lliialiviiiiviylivya 90 
                 ++++ +++++i +i + vya
  CCD26556.1 191 FIWASVALMLINSIATTVYA 210
                 55666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1098  (0.0612416); expected 358.6 (0.02)
Passed bias filter:                      520  (0.0290033); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.28s 00:00:00.75 Elapsed: 00:00:00.41
# Mc/sec: 2191.79
//
Query:       CCD26557.1  [L=1514]
Description: hypothetical protein NDAI_0H03840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   11.2   0.5      1e+02    1.9   0.0    3.8  4  FUSC-like  FUSC-like inner membrane protein yccS


Domain annotation for each model (and alignments):
>> FUSC-like  FUSC-like inner membrane protein yccS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0    0.0056     1e+02     217     267 ..     519     569 ..     516     578 .. 0.88
   2 ?    1.4   0.0    0.0077   1.4e+02     218     260 ..     580     622 ..     575     631 .. 0.81
   3 ?   -0.1   0.0     0.023     4e+02     221     259 ..     643     681 ..     639     688 .. 0.83
   4 ?    1.6   0.0    0.0064   1.2e+02     227     259 ..     717     750 ..     707     760 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.0056
   FUSC-like 217 lqakaceeiaqaillnkpyqhserleraleeleqslellakqnnekekell 267
                 ++ +++ + aq + +nk+y++ +r+++ l  ++ +++  ++++++++++++
  CCD26557.1 519 QMQEDLHQGAQGVDMNKNYHTGSRTNKDLGTIKREIDASERETKPVKAHAV 569
                 788899999**************************9998888888877765 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.0077
   FUSC-like 218 qakaceeiaqaillnkpyqhserleraleeleqslellakqnn 260
                 + +++ + a+++ +nk+y++ +r+++ l  ++ +++  +++++
  CCD26557.1 580 MQEDLYQGAKDVNMNKNYHTGARTDKDLGTIKREIDVSERESK 622
                 66788999********************999999988655544 PP

  == domain 3  score: -0.1 bits;  conditional E-value: 0.023
   FUSC-like 221 aceeiaqaillnkpyqhserleraleeleqslellakqn 259
                 ++ + a+ + +nk+y++++r+++ l+ ++ +++  +++ 
  CCD26557.1 643 DLYQGAKGVDMNKNYHTDARTDKDLDTIKREIAIAESRG 681
                 677789999********************9999866664 PP

  == domain 4  score: 1.6 bits;  conditional E-value: 0.0064
   FUSC-like 227 qaillnkpyqhserleraleeleqslellakq.n 259
                 + + +nk+y++++r+++ l++++  +e ++kq +
  CCD26557.1 717 EGVDMNKDYHTDARTDQDLDSIKRDIEAIEKQrT 750
                 56889***********************999933 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1514 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1073  (0.0598472); expected 358.6 (0.02)
Passed bias filter:                      271  (0.0151152); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.00u 0.32s 00:00:01.32 Elapsed: 00:00:00.48
# Mc/sec: 9542.72
//
Query:       CCD26558.1  [L=742]
Description: hypothetical protein NDAI_0H03850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.7e-15   54.2   0.0    1.6e-13   50.3   0.0    2.4  2  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.019   3.4e+02       3      50 ..     125     176 ..     123     187 .. 0.76
   2 !   50.3   0.0   8.8e-18   1.6e-13       1      69 [.     628     700 ..     628     701 .. 0.89

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.019
                 EESETTTSSHHHHHHHHHTTSCEEEEEEEEE....TTTSEEEEEEEEESSHH CS
       RRM_1   3 VgnLppdvteeeLkelFskfGpiksiklvrd....etgkskgfafVeFeske 50 
                 ++n+p+d++ +e +++F      ++++lv++    +++k++ +   +Fes  
  CCD26558.1 125 IKNIPNDISLRECHAIFALSTNPTHVELVHTseknNNEKNNMYILAKFESLP 176
                 99*******9999999998666668888887766667777777777777665 PP

  == domain 2  score: 50.3 bits;  conditional E-value: 8.8e-18
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE....TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd....etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 l+VgnLppd+te+eL++lFs  +++++++  ++      + + +++fVeFe+   A++Al +l g +l+  +l
  CCD26558.1 628 LYVGNLPPDATENELRQLFSCQNGFRRLSFRNKntngHGHGHGPMCFVEFEDINFATQALGELYGSQLPRATL 700
                 8********************************8554344566799*******************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       962  (0.0536561); expected 358.6 (0.02)
Passed bias filter:                      260  (0.0145016); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 5103.64
//
Query:       CCD26559.1  [L=580]
Description: hypothetical protein NDAI_0H03860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-71  240.8   7.0    2.5e-63  214.0   3.7    2.5  2  Septin         Septin
    0.00089   19.2   0.0     0.0028   17.6   0.0    1.8  1  Sigma_1s       Sigma 1s protein
     0.0016   18.4   0.1       0.06   13.3   0.0    2.6  2  RsgA_GTPase    RsgA GTPase
     0.0018   18.4   0.0     0.0082   16.3   0.0    2.1  1  AAA_33         AAA domain
     0.0027   18.0   0.6      0.013   15.8   0.0    2.4  3  AAA_22         AAA domain
     0.0052   16.5   0.1      0.027   14.2   0.0    2.3  3  AAA_24         AAA domain
      0.008   16.7   1.1      0.029   14.9   0.0    2.5  2  AAA_18         AAA domain
  ------ inclusion threshold ------
      0.018   14.6   0.1      0.037   13.5   0.1    1.5  1  AAA_7          P-loop containing dynein motor region
      0.023   14.0   1.9       0.17   11.2   0.0    2.4  2  AIG1           AIG1 family
      0.024   15.4   2.7      0.041   14.6   0.3    2.8  2  LIN52          Retinal tissue protein
      0.024   14.1   0.0      0.057   12.9   0.0    1.6  1  Pox_A32        Poxvirus A32 protein
      0.067   13.4   0.0       0.16   12.2   0.0    1.7  1  Roc            Ras of Complex, Roc, domain of DAPkinase
      0.076   13.4   0.1       0.22   11.9   0.0    1.9  1  AAA            ATPase family associated with various cellular
      0.085   13.3   0.0       0.26   11.7   0.0    1.9  1  RNA_helicase   RNA helicase
       0.13   12.3   0.0       0.13   12.3   0.0    3.3  2  Dynamin_N      Dynamin family
       0.15   11.4   0.3       0.71    9.2   0.0    2.0  2  Mg_chelatase   Magnesium chelatase, subunit ChlI
        2.7    7.8   5.8       0.47   10.3   1.0    2.3  2  Synaptobrevin  Synaptobrevin


Domain annotation for each model (and alignments):
>> Septin  Septin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   1.9e-09     2e-06       1      54 [.      22      79 ..      22      88 .. 0.78
   2 !  214.0   3.7   2.4e-66   2.5e-63      51     278 ..     125     349 ..      94     352 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.9e-09
                XEEEEEEEEEEBTTSSCCCCCCTTSSSS----....--------------S-EEEEEE CS
      Septin  1 kgieftlmvvGesglGkttlintlfetdliee....ekleeasekkkktveikkkkvv 54
                +gi++t+m++G+sg+Gktt+ n l+e+++ ++    +++ +++++ +++v+i + ++v
  CCD26559.1 22 RGITYTMMLCGNSGTGKTTFANNLLESNIFPHqfshSEYMDNANSLSSKVKIIQPTKV 79
                69***************************99966554455555666677777655554 PP

  == domain 2  score: 214.0 bits;  conditional E-value: 2.4e-66
                 EEEEEEETTCEEEEEEEE---BSSSSSHHCCCHHHHHHHHHHHHHHHHHCTSS--.SS-----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS-EEEEE CS
      Septin  51 kkvvieedgvklnltviDtpgfGdavdnskswepiveyideqfeeylreesklkR.kkivDkRvHaclyfisPtghglkpldvelmkklsekvnliPvi 148
                 + v+i++d   + +++i+t g  +++d s  ++ i +y+++qf+ +l ee++++R  ++ D+RvH  lyfi+Ptghgl+++d+elmk++s+  n++P+i
  CCD26559.1 125 AYVSIDDD--IISFNLINTYGINENLDDSLIFNEITSYLEQQFDIVLAEETRIRRnPRFEDTRVHIALYFIEPTGHGLREIDIELMKRISRYTNVLPII 221
                 33444444..678999***************************************999***************************************** PP

                 SSGGGS-HHHHHHHHHHHHHHHHHTT--------SSSS-SCCHHHHHHHHHHC-SEEB-SSSSEEEESSSEEEEEEETTEEEETT-T.TT-SCCHHHHH CS
      Septin 149 aKaDtltkeElkefKkkireeleeeeikiyklpdeeededeeakelseklkeslPfaivgsneliekkgkkvrgRkypWGvvevene.khsdFlkLrkl 246
                 +KaD++tk+Elk+fKk i++++e+ +++iyk+    +d+d ea e++++l +  Pf+iv s+   +k+gk +  R+ypWG+v ++++ + sd ++L+++
  CCD26559.1 222 SKADSFTKDELKQFKKIIMNDVERFNVPIYKFEIDPDDDDLEAIEENRTLAALQPFSIVVSDV-KNKEGKYI--REYPWGTVSIDEDnDVSDLNILKNV 317
                 *******************************76667788899*****************9974.45589988..79********8661679******** PP

                 HHHHCHHHHHHHHHHTHHHHHHHHHH-XXXXX CS
      Septin 247 llkthledLkevteellYetyRseklsklkek 278
                 l+ +hl++ k++t++llYe+yR ekls+ +++
  CCD26559.1 318 LFGSHLQEFKDTTQNLLYENYRVEKLSTVSKN 349
                 **************************998765 PP

>> Sigma_1s  Sigma 1s protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   2.6e-06    0.0028       4     104 ..      12     113 ..      10     128 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 2.6e-06
    Sigma_1s   4 slnkkSrksRkklkytLllSsgsvrdsiqqkdesvllskvgqpllrelVrtnlelidska.lseaykqlsadlirvyPswVtEsmllrqeLqsyilsri 101
                 sl ++ +  R+   yt++l + s +  ++  ++++++ +    +++   + n ++  sk+ + ++ k  s ++    P + +E + +r+ L+s i  + 
  CCD26559.1  12 SLFRRKKENRRGITYTMMLCGNSGTGKTTFANNLLESNIFPHQFSHSEYMDNANSLSSKVkIIQPTKVVSFNSKDGIPTYMAEFDPQRSALESGITITS 110
                 667888999999***********************************************83579*****************************999888 PP

    Sigma_1s 102 iSL 104
                  SL
  CCD26559.1 111 TSL 113
                 888 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.7e-05      0.06     101     122 ..      27      48 ..      19      87 .. 0.86
   2 ?    2.2   0.0      0.15   1.5e+02      43      94 ..     211     266 ..     196     273 .. 0.69

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 5.7e-05
                  EEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase 101 tsvlvGqSGvGKStLinallpe 122
                  t++l+G+SG GK+t+ n+ll++
   CCD26559.1  27 TMMLCGNSGTGKTTFANNLLES 48 
                  789***************9876 PP

  == domain 2  score: 2.2 bits;  conditional E-value: 0.15
                  HHTT-EEEEEEE-GGG--HHH...HHHHHHHHHHHTTSEEEE--TT.THTTHHHHH CS
  RsgA_GTPase  43 eekgiepvivlnKiDlleeee...eleelkeelealgyevllvsak.tkegleelk 94 
                   ++  +++ +++K+D  +++e     + +++++e++++++++ + + + ++le+++
   CCD26559.1 211 ISRYTNVLPIISKADSFTKDElkqFKKIIMNDVERFNVPIYKFEIDpDDDDLEAIE 266
                  55566777799*******99966333445677888999988887662345555555 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.8e-06    0.0082       3      22 ..      29      48 ..      28      57 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 7.8e-06
      AAA_33  3 llvGlpGsGKstlaerllkk 22
                +l+G +G+GK+t+a +ll+ 
  CCD26559.1 29 MLCGNSGTGKTTFANNLLES 48
                89***************976 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.2e-05     0.013       8      29 ..      28      49 ..      22      85 .. 0.82
   2 ?   -2.0   0.0       3.8     4e+03      88     125 ..     213     250 ..     194     251 .. 0.70
   3 ?   -3.3   0.3       9.6     1e+04      71      89 ..     517     535 ..     500     547 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.8 bits;  conditional E-value: 1.2e-05
      AAA_22  8 lvvtGesGtGKTtllrrlleql 29
                ++++G sGtGKTt +++lle++
  CCD26559.1 28 MMLCGNSGTGKTTFANNLLESN 49
                789****************986 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 3.8
      AAA_22  88 aravielliiDEaqhlrseealeeL.rsllnl.srkgvql 125
                 ++   +l ii  a+ + +++ l+++ ++++n+ +r++v++
  CCD26559.1 213 RYTN-VLPIISKADSF-TKDELKQFkKIIMNDvERFNVPI 250
                 3333.58899999999.88888888666788777877765 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 9.6
      AAA_22  71 erlsseellealeqalrar 89 
                 e +s +el +++++  +++
  CCD26559.1 517 EAQSAKELTKRIQELEKKA 535
                 2477777777777765555 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   2.5e-05     0.027       3      24 ..      26      47 ..      24      73 .. 0.85
   2 ?   -3.2   0.0       5.3   5.6e+03      33      74 ..     198     243 ..     193     247 .. 0.72
   3 ?   -2.3   0.0       2.9   3.1e+03     122     140 ..     312     332 ..     306     347 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 2.5e-05
      AAA_24  3 lkiliyGpsgiGKTtlakelgp 24
                + +++ G sg+GKTt+a++l +
  CCD26559.1 26 YTMMLCGNSGTGKTTFANNLLE 47
                6899**************9943 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.3
      AAA_24  33 kGlksldadkfpdieswedfldevvel....aaeladyktlviDti 74 
                 +Gl+++d   +++i+ ++++l  + +     ++el+++k ++   +
  CCD26559.1 198 HGLREIDIELMKRISRYTNVLPIISKAdsftKDELKQFKKIIMNDV 243
                 6777777777777887777777777777778888888888877655 PP

  == domain 3  score: -2.3 bits;  conditional E-value: 2.9
      AAA_24 122 rk..nvifiahektrkdedpe 140
                 +   nv f +h+++ kd++++
  CCD26559.1 312 NIlkNVLFGSHLQEFKDTTQN 332
                 4455999******99999875 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.8e-05     0.029       2      40 ..      29      69 ..      28     126 .. 0.79
   2 ?   -1.4   0.8       3.1   3.3e+03      28      54 ..     415     441 ..     397     543 .. 0.62

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 2.8e-05
      AAA_18  2 lltGtpGvGKttlakeLskrlgf...gvnlrdvakengllle 40
                +l+G +G+GKtt+a++L +++ +    + ++++  + ++l +
  CCD26559.1 29 MLCGNSGTGKTTFANNLLESN-IfphQFSHSEYMDNANSLSS 69
                69***************9984.56885555555555444444 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 3.1
      AAA_18  28 lrdvakenglllevdpe.aldeskrlde 54 
                 +r ++ke+++  + d++ +++ ++++ e
  CCD26559.1 415 SRNNIKEEDMDSSSDHYyEHQAKREI-E 441
                 56666666666666666322222222.2 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.1   3.5e-05     0.037      35      56 ..      27      48 ..      23      77 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 3.5e-05
       AAA_7 35 pvllvGptGtGKtviikdllkk 56
                 ++l+G++GtGKt+ +++ll++
  CCD26559.1 27 TMMLCGNSGTGKTTFANNLLES 48
                79****************7754 PP

>> AIG1  AIG1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00017      0.17       2      40 ..      27      65 ..      26      80 .. 0.83
   2 ?    1.5   0.5      0.15   1.6e+02     156     205 ..     505     552 ..     476     558 .. 0.67

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00017
                EEEEESSTTSSHHHHHHHHHTS--SS--TTTS---SS-E CS
        AIG1  2 tivlvGktgnGkSaTgNsilgkkaFesklsaqsvtkkcq 40
                t++l G +g+Gk + +N++l++++F  ++s+++ + + +
  CCD26559.1 27 TMMLCGNSGTGKTTFANNLLESNIFPHQFSHSEYMDNAN 65
                789**********************99988777665555 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.15
                 SEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCC CS
        AIG1 156 RvvlfnnktaskeekeeQvkellelveaivkenggkpytnelyekikeea 205
                 R+++ + k   +e +++ +kel + +++++k++++  + ++l ++ +++ 
  CCD26559.1 505 RILARQQK--LEELEAQSAKELTKRIQELEKKAHDLKLREKLLKQQHKNG 552
                 33333333..3444444479999************999999888877665 PP

>> LIN52  Retinal tissue protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1       6.4   6.8e+03      27      49 ..     348     370 ..     322     399 .. 0.66
   2 ?   14.6   0.3   3.9e-05     0.041       6      82 ..     466     543 ..     461     552 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 6.4
       LIN52  27 kktlssekasepewkeelekddi 49 
                 k++ ss+++++p+ +++l+++d 
  CCD26559.1 348 KNEPSSQSSNTPNDNDRLNTNDA 370
                 33444444445555555555553 PP

  == domain 2  score: 14.6 bits;  conditional E-value: 3.9e-05
       LIN52   6 kLdrsSPelwPeqvpgvsdflkk.tlssekasepewk.eelekddiellnelgsltteqLlekvkelqdlayqLgleEs 82 
                 k+++sSP + P +  g++d++++ +l++ +++ p +  +e      ++l+el++ ++++L ++++el+++a+ L l+E+
  CCD26559.1 466 KIESSSPRI-PAKGDGLNDIAERsKLRNISETVPYVLrHERILARQQKLEELEAQSAKELTKRIQELEKKAHDLKLREK 543
                 678899987.9999*******985444444444544444444566789*****************************96 PP

>> Pox_A32  Poxvirus A32 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.4e-05     0.057      10      38 ..      22      50 ..      13      88 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.4e-05
     Pox_A32 10 lkkpFrlalvGgsGsGktvyLlsLlrtlv 38
                +   + + l G+sG Gkt++  +Ll++ +
  CCD26559.1 22 RGITYTMMLCGNSGTGKTTFANNLLESNI 50
                455799******************98644 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   0.00015      0.16       2      30 ..      28      56 ..      27      84 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 0.00015
                EEEESSTTSSHHHHHHCHCT-CCC-EEET CS
         Roc  2 vvlvGdsgvGKtsllkrfvedkfsekeks 30
                ++l+G+sg+GKt+++++++e+++ +++ s
  CCD26559.1 28 MMLCGNSGTGKTTFANNLLESNIFPHQFS 56
                79*****************9988766544 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00021      0.22       1      21 [.      28      48 ..      28      94 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 0.00021
                EEEESSTTSSHHHHHHHHHHH CS
         AAA  1 vllyGppGtGKTllakavake 21
                ++l+G+ GtGKT++a+ + ++
  CCD26559.1 28 MMLCGNSGTGKTTFANNLLES 48
                79**************99987 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025      0.26       2      21 ..      29      48 ..      28      86 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 0.00025
  RNA_helicase  2 wlyGpsgeGKStlakeLaka 21
                  +l+G+sg+GK+t+a++L ++
    CCD26559.1 29 MLCGNSGTGKTTFANNLLES 48
                  79**************7654 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   0.00012      0.13       2      26 ..      29      53 ..      28      61 .. 0.91
   2 ?   -1.9   0.0       2.9   3.1e+03      63      81 ..     152     170 ..     102     233 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.00012
                EEEEBTTTTHHHHHHHHHTS--S-- CS
   Dynamin_N  2 avvGsqSsGKSSvlnaLlgedilpr 26
                +++G+   GK++++n+Ll+++i+p 
  CCD26559.1 29 MLCGNSGTGKTTFANNLLESNIFPH 53
                589********************96 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 2.9
                 --CHHHHHHHHHHHHHHHT CS
   Dynamin_N  63 edfsevreeieketekiag 81 
                   f+e++ ++e++++ +  
  CCD26559.1 152 LIFNEITSYLEQQFDIVLA 170
                 2344444444444444443 PP

>> Mg_chelatase  Magnesium chelatase, subunit ChlI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00067      0.71      24      62 ..      27      68 ..      23      84 .. 0.74
   2 ?   -0.9   0.1      0.82   8.7e+02      45      92 ..     506     559 ..     501     569 .. 0.59

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00067
  Mg_chelatase 24 nlllvGppGsGKtmlakrl..psllpp.lseeealevakias 62
                   ++l+G++G+GKt  a+ l  ++++p+  s++e ++ a+  s
    CCD26559.1 27 TMMLCGNSGTGKTTFANNLleSNIFPHqFSHSEYMDNANSLS 68
                  699**************9933468885256777777766555 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.82
  Mg_chelatase  45 llpplseeealevakiasvag......kkeeekllkrrpfraphhsaskaalvG 92 
                   +l++ ++ e le+++ + +++      kk+++ +l+++ +++ h++ s+++l+ 
    CCD26559.1 506 ILARQQKLEELEAQSAKELTKriqeleKKAHDLKLREKLLKQQHKNGSSSSLLS 559
                   555555555555555544443211110344555667777889999999888875 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.5   6.8e+03       8      25 ..     228     245 ..     227     246 .. 0.85
   2 ?   10.3   1.0   0.00044      0.47      24      58 ..     504     539 ..     491     549 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 6.5
                    HHHHHHCCCCHHCCHHHH CS
  Synaptobrevin   8 ikaevdevkdimkeNidk 25 
                    +k+e+++ k+i+++++++
     CCD26559.1 228 TKDELKQFKKIIMNDVER 245
                    689999999999999986 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00044
                    HHCHCCCCCHHHHCCCC.HHHHHHHHHHHHHHHHHH CS
  Synaptobrevin  24 dkvlergekldeLvdkt.enLqssaqqFkkqarklk 58 
                    +++l+r++kl+eL+ ++ ++L++  q+ +k+a++lk
     CCD26559.1 504 ERILARQQKLEELEAQSaKELTKRIQELEKKAHDLK 539
                    789**********9876268*************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1591  (0.0887389); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.67u 0.30s 00:00:00.97 Elapsed: 00:00:00.46
# Mc/sec: 3829.32
//
Query:       CCD26560.1  [L=604]
Description: hypothetical protein NDAI_0H03870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1988  (0.110882); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.27s 00:00:00.91 Elapsed: 00:00:00.44
# Mc/sec: 4150.62
//
Query:       CCD26561.1  [L=370]
Description: hypothetical protein NDAI_0H03880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      2e-32  111.7   0.0      2e-32  111.7   0.0    2.4  2  ArfGap           Putative GTPase activating protein for Arf
     0.0025   17.9   1.9     0.0034   17.5   0.0    2.2  3  Rhomboid_N       Cytoplasmic N-terminal domain of rhomboid se
     0.0056   16.6   1.2      0.011   15.7   1.2    1.4  1  Auxin_canalis    Auxin canalisation
  ------ inclusion threshold ------
      0.032   14.5   0.8        9.7    6.6   0.0    3.1  3  Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III


Domain annotation for each model (and alignments):
>> ArfGap  Putative GTPase activating protein for Arf
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.0   4.5e-36     2e-32       4     113 ..      14     119 ..      11     123 .. 0.92
   2 ?   -2.2   2.8       0.9   4.1e+03      65      91 ..     331     357 ..     262     369 .. 0.71

  Alignments for each domain:
  == domain 1  score: 111.7 bits;  conditional E-value: 4.5e-36
                 HHHHCCSCCCCB-TTT-SBS--EEETTTTEEE-HHHHHHHCCS.TTT--EEETTTS---HHHHHHHHHTCHHHHHHHHTTTC-TTTSG-TTCGHHHHHH CS
      ArfGap   4 lkellkepenkvCaDCgakeptWaslnlgvflCieCsgvHrslgvhiskvrsltldkwedeelellkalgNkkaneileaklpkeekrskssskekree 102
                 l +l+k  +nk+C+DC+a++p+Was ++g+f+C+eC+g Hrslgvhis+vrs+t+d++++eel  ++++gN+++n+++ ++  + + +     k k+++
  CCD26561.1  14 LLQLQKVGANKKCVDCHAPNPQWASPKFGIFICLECAGTHRSLGVHISFVRSITMDQFKPEELVRMEKGGNQQFNDYMSQHGIDLNLP----PKVKYDN 108
                 56788899*************************************************************************9777777....7889999 PP

                 HHHHHHTCHTT CS
      ArfGap 103 firakYeekkf 113
                  i++ Y++k  
  CCD26561.1 109 LIAEDYKQKLT 119
                 99999999876 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.9
                 HHHHHHHTCHHHHHHHHTTTC-TTTSG CS
      ArfGap  65 elellkalgNkkaneileaklpkeekr 91 
                 + +  +a+ N+++ + +   +++++++
  CCD26561.1 331 QYSNANATNNDNNDSSYHDASTQDREE 357
                 444444555555555555544333333 PP

>> Rhomboid_N  Cytoplasmic N-terminal domain of rhomboid serine protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.6e-07    0.0034      14      62 ..      85     132 ..      75     152 .. 0.89
   2 ?   -3.3   0.1       2.4   1.1e+04      69      77 ..     277     285 ..     276     293 .. 0.73
   3 ?   -3.0   0.3         2   8.8e+03      61      77 ..     343     359 ..     328     363 .. 0.66

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 7.6e-07
  Rhomboid_N  14 qafidYlrsqgiklelrseeegvqlwledeeqlaqveaeleeFlqnPed 62 
                 q+f dY++++gi+l+l ++++ + l+ ed +q  + e e   F++ Pe+
  CCD26561.1  85 QQFNDYMSQHGIDLNLPPKVKYDNLIAEDYKQKLTCEVEGTDFVE-PEH 132
                 99********************99********9999999999984.555 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 2.4
  Rhomboid_N  69 sWetgetss 77 
                  W++ge s+
  CCD26561.1 277 QWQSGELSE 285
                 599999854 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 2
  Rhomboid_N  61 edekYqqAsWetgetss 77 
                 +d+ Y  As +  e s+
  CCD26561.1 343 NDSSYHDASTQDREESN 359
                 56777777766655544 PP

>> Auxin_canalis  Auxin canalisation
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   1.2   2.4e-06     0.011       5     108 ..     242     346 ..     239     367 .. 0.66

  Alignments for each domain:
  == domain 1  score: 15.7 bits;  conditional E-value: 2.4e-06
  Auxin_canalis   5 tepmefLsrsWsvsAlevskalavlsaakaasnkfsfassatsqlvleeiesqsaaeskevspltserlshssgptdsppisps.esddvkyiraq 99 
                    ++p+  Lsr Ws++++ ++k++  ++++  +    + +s +  +  +++ ++q  ++ +e+s+ + +  ++  ++ +++ ++p  +++dv+y +a+
     CCD26561.1 242 NDPIGTLSRGWSLFSSAITKSFDDVTETVIKPGMEQWQSGE-LSEETKRAAAQFGQKFQETSTYGIQAFQQFTKNLQDQYVNPGtDMNDVQYSNAN 336
                    578999****************9988776666555555555.444455556666667777777666666666666778888887789999988777 PP

  Auxin_canalis 100 nalkpeln.l 108
                     + + +   +
     CCD26561.1 337 ATNNDNNDsS 346
                    7666655431 PP

>> Cytochrome_CBB3  Cytochrome C oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.5    0.0086        39      11      20 ..      23      33 ..      16      97 .. 0.72
   2 ?    6.6   0.0    0.0022       9.7      38      66 ..     264     294 ..     238     294 .. 0.76
   3 ?   -2.1   0.0       1.2   5.2e+03      38      59 ..     299     320 ..     296     322 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0086
  Cytochrome_CBB3 11 kknCasCHg.k 20
                     +k+C+ CH+ +
       CCD26561.1 23 NKKCVDCHApN 33
                     789*****942 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0022
  Cytochrome_CBB3  38 vdiiknGkg.aMpafgg.qlsdeelwalvaY 66 
                       d+++  ++ +M  +++ +ls+e ++a++++
       CCD26561.1 264 DDVTETVIKpGMEQWQSgELSEETKRAAAQF 294
                      44555555449*****99**********997 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 1.2
  Cytochrome_CBB3  38 vdiiknGkgaMpafggqlsdee 59 
                      +++ ++G++a + f ++l d+ 
       CCD26561.1 299 QETSTYGIQAFQQFTKNLQDQY 320
                      5667889999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1132  (0.0631379); expected 358.6 (0.02)
Passed bias filter:                      416  (0.0232026); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2944.31
//
Query:       CCD26562.1  [L=582]
Description: hypothetical protein NDAI_0H03890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.2e-41  139.0   0.0    5.9e-36  123.0   0.0    2.6  2  Hom_end       Homing endonuclease
    2.9e-39  135.4   0.0    3.7e-39  135.0   0.0    1.1  1  Hom_end_hint  Hom_end-associated Hint
    2.2e-08   34.3   0.0    1.7e-05   25.0   0.0    2.7  2  LAGLIDADG_3   LAGLIDADG-like domain
     0.0007   19.6   0.3     0.0015   18.5   0.3    1.6  1  DUF1794       Domain of unknown function (DUF1794)


Domain annotation for each model (and alignments):
>> Hom_end  Homing endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.7e-05     0.077      16     102 ..     212     293 ..     201     299 .. 0.80
   2 !  123.0   0.0   1.3e-39   5.9e-36       2     107 ..     309     422 ..     308     425 .. 0.95

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 1.7e-05
     Hom_end  16 aFlaGLvdsdgyvkkekedsatvktedksvmegivklarsLGikasvktkeekidakgvkhqfcyaitlsggdalksvlskcalakk 102
                 a+l+GL+ +dg++k+    ++tv++ d+++me + +     G+   +k++  + +ak+v++   y +  s++   +++ ++++ ++ 
  CCD26562.1 212 AWLLGLWLGDGTTKEP---EITVDSFDQTLMESLKEQGYLWGLYPYYKDEAVPLRAKHVRL--YYGAGPSNKRKVRNLRRDNPFWNT 293
                 68************99...**************9998888888888888888888888877..666666666667777777766665 PP

  == domain 2  score: 123.0 bits;  conditional E-value: 1.3e-39
     Hom_end   2 ipsflaseaievREaFlaGLvdsdgyvkkeked....satvktedksvmegivklarsLGikasvkt...keekidakgvkhqfcyaitlsggdalksv 93 
                  p+f++ e++e+REaFlaGL+d+dgyv kek +    ++t++t+++s+meg+v++arsLG+ a+v+t   ++++i +++v +qf+y+i++sg ++l+sv
  CCD26562.1 309 LPEFMWNEDVEIREAFLAGLIDADGYVLKEKRAdktyVVTIQTIYHSIMEGVVNIARSLGMWATVTTrsaRTSTIIGRQVTCQFTYDISISGTTPLQSV 407
                 69****************************988999*******************************888888999*********************** PP

     Hom_end  94 lskcalakkrvea.k 107
                 l++c++++kr+ea k
  CCD26562.1 408 LAYCRSGHKRREApK 422
                 ***********9854 PP

>> Hom_end_hint  Hom_end-associated Hint
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.0   8.2e-43   3.7e-39       1     225 [.       1     461 [.       1     463 [. 0.98

  Alignments for each domain:
  == domain 1  score: 135.0 bits;  conditional E-value: 8.2e-43
                   CEETT-EEEBTTS-EEEGGG--TT-EEEBTTSSEEEEEE--EEEEEEEEEEE-SSSBHHSSST............-SEEEEETT-EEEEEEE-EEEE CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx............xxxxxxxxxxxxxxxxxxxxxx RF
  Hom_end_hint   1 cFakgTevlmadGsdksiedievgekvmGkdGkpreVvalprgvetmYevkektkhraeeees............llsfvcnanHkLvlrtpqkikl 85 
                   +F++ T ++ma+ s+++i di+ + +v ++dG+  +V+++++ ++t+Ye+ + tkhra+e+e             +++++c+a+H+L l  p k ++
    CCD26562.1   1 MFEESTAIIMANNSIEKIGDIKCNSYVRCEDGSDSRVTSVAKATQTVYEIVQRTKHRANEGEPgrsdplrkkvfqRIQLKCTAAHELNLMVPIKATI 97 
                   79*********************************************************999999******************************** PP

                   EEEEESTEEEEEEEEEEEEEEE-TTS-EEEEEEEEEEEEE.GGGTTHHHHHHHHHHHTS-SSSEEEEEEEGGGGGGS-HHHHHH-EEEE--B---B- CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hom_end_hint  86 terklrgkkytsVtyfalekektedgrvieivkevtksfehesegkekaaekakeFastidkeeiewtieardlkkleeevrkatqqlinPvllese 182
                   +++ +r+k   sV ++++ek +t dgrvi i+k+++k+f+++s g+++ a+ +k+ ++ +  +++ ++++ rdl+ l+ + r+a   +++P+l+ ++
    CCD26562.1  98 ENSFKRQK--YSVRWTQFEKFQTLDGRVIMIPKNHHKDFPMDSDGEKA-AKLMKDDLNLLYGNRFIFNLQLRDLDYLDGQTRAAVSLRYCPILTGNG 191
                   **998877..99****************************99997666.667888899999999********************************* PP

                   HHHHHHH.......................................................................................... CS
                   xxxxxxx.......................................................................................... RF
  Hom_end_hint 183 klaevle.......................................................................................... 189
                    l+e+l+                                                                                          
    CCD26562.1 192 ILSEFLTgqphlitsatlsmawllglwlgdgttkepeitvdsfdqtlmeslkeqgylwglypyykdeavplrakhvrlyygagpsnkrkvrnlrrdn 288
                   ************************************************************************************************* PP

                   ................................................................................................. CS
                   ................................................................................................. RF
  Hom_end_hint 190 ................................................................................................. 189
                                                                                                                    
    CCD26562.1 289 pfwntvkglkfkreddghkqlpefmwnedveireaflaglidadgyvlkekradktyvvtiqtiyhsimegvvniarslgmwatvttrsartstiig 385
                   ************************************************************************************************* PP

                   .........................................--EEE-EEEEEEEEEEEEEEEEETTS-SEEEBTTSB CS
                   .........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Hom_end_hint 190 .........................................eavpfkFelekkeedeyyGitladesdkqfLlsnla 225
                                                            e+++fkF+ +   + +++G+t+ ++  +++Ll+n++
    CCD26562.1 386 rqvtcqftydisisgttplqsvlaycrsghkrreapkhvsrEPIYFKFTEKVIGQSNVVGLTI-ENHKQNILLANKV 461
                   ***************************************************************.889999***9986 PP

>> LAGLIDADG_3  LAGLIDADG-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0025        11       4      41 ..     211     243 ..     208     245 .. 0.82
   2 !   25.0   0.0   3.8e-09   1.7e-05       3      64 ..     321     381 ..     319     399 .. 0.84

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0025
                  HHHHHHHHHHCCECCECSTTTTSEEEEES-HHHHHHHH CS
  LAGLIDADG_3   4 aafLrGlfdaDGsvskskkkgvsisltssskelledvq 41 
                   a+L Gl+ +DG+  + +     i++ s +  l+e ++
   CCD26562.1 211 MAWLLGLWLGDGTTKEPE-----ITVDSFDQTLMESLK 243
                  689**********99888.....888888888877665 PP

  == domain 2  score: 25.0 bits;  conditional E-value: 3.8e-09
                  HHHHHHHHHHHCCECCECSTTTTS..EEEEES-HHHHHHHHHHHHHCT.HSCEEEEEEE-SCCC CS
  LAGLIDADG_3   3 kaafLrGlfdaDGsvskskkkgvs..isltssskelledvqrlLlrlGIestiyekkkakgrgv 64 
                    afL+Gl+daDG+v k+k+  +   +++ +   +++e+v ++   lG+ +t++++   + r++
   CCD26562.1 321 REAFLAGLIDADGYVLKEKRADKTyvVTIQTIYHSIMEGVVNIARSLGMWATVTTR---SARTS 381
                  679************99998888789***************************999...33333 PP

>> DUF1794  Domain of unknown function (DUF1794)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.3   3.4e-07    0.0015       4      93 ..     210     365 ..     207     411 .. 0.66

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 3.4e-07
                 GGGGGBEEEEEEEEEEETTCEEEEEEEEEEEEESSSSEEE.....EEEEEEETTTEE.......................................... CS
     DUF1794   4 pLawLvGtWrGeGeggyptieefafgqeiefshdggpyla.....Yesrtwrldepl.......................................... 55 
                  +awL+G W G+G+ ++p+i+  +f q++  s +++ yl+     Y+ +++ l ++                                           
  CCD26562.1 210 SMAWLLGLWLGDGTTKEPEITVDSFDQTLMESLKEQGYLWglypyYKDEAVPLRAKHvrlyygagpsnkrkvrnlrrdnpfwntvkglkfkreddghkq 308
                 689***************************999******999998888888888422344566666677777777666666666666666666666666 PP

                 ....................EEEEEEEE.CTSCTEEEEEEEETTTEEEEEEEEEETCC CS
     DUF1794  56 ....................hrEsGywrledgtdevelllahpsGvvelyeGevkngr 93 
                                      +  Gy  +e+  d+  ++++ ++ + +++eG v+ +r
  CCD26562.1 309 lpefmwnedveireaflaglIDADGYVLKEKRADKT-YVVTIQTIYHSIMEGVVNIAR 365
                 666666666666666666666666666654444444.444444567777777777444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.43
# Mc/sec: 4049.66
//
Query:       CCD26563.1  [L=613]
Description: hypothetical protein NDAI_0H03900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.2e-228  760.2   7.3   1.3e-228  760.0   7.3    1.0  1  HSP70     Hsp70 protein
    7.3e-16   57.9   0.5    2.5e-14   52.9   0.2    2.2  2  MreB_Mbl  MreB/Mbl protein
     0.0014   18.4   0.0     0.0027   17.5   0.0    1.5  1  FGGY_C    FGGY family of carbohydrate kinases, C-terminal dom
  ------ inclusion threshold ------
      0.032   14.6   4.1          3    8.3   0.1    3.5  3  FtsA      Cell division protein FtsA


Domain annotation for each model (and alignments):
>> HSP70  Hsp70 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  760.0   7.3    3e-232  1.3e-228       1     594 [.       9     610 ..       9     613 .] 0.96

  Alignments for each domain:
  == domain 1  score: 760.0 bits;  conditional E-value: 3e-232
                 EEEEEEXSSEEEEEEEETTEEEEEXXTTSXSSEESEEEEXTTSEEETHHHHHCTTTTGGGEEEXGGGTTTXBTTSHHHHHHHTTXSSEEEEETTSBEEE CS
       HSP70   1 viGiDLGttnsvvavmeggkievianeegnrttPsvvaFtkkerlvGeaAkrqavtnpkntvfsvKrliGrkfsdpevqkeikelpykvvkkengkavv 99 
                 +iGiDLGtt+s+va  e+ ++e+iane+gnr+tPs+vaFt++erl+G+aAk+qa+ npkntvf++KrliGr+f++++vq+++k++p+kv    +g++v+
  CCD26563.1   9 AIGIDLGTTYSCVATYES-SVEIIANEQGNRVTPSFVAFTPEERLIGDAAKNQAALNPKNTVFDAKRLIGRRFDEESVQQDMKTWPFKVIDV-DGNPVI 105
                 59************9986.79********************************************************************998.9***** PP

                 EEEETTE..EEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEEXTTXXHHHHHHHHHHHHHTTXEEEEEEEHHHHHHHHHHTC..CSSSCEEEEEEEEX CS
       HSP70 100 eveaage..kftpeqisamvLkklketaeaylgkkvtdavitvPaYfndaqRqatkdAgkiAGLnvlRivNepTAaalaYGld..kkdkernvlvyDlG 194
                 eve+ ge  +f+p++is+mvL+k+ke+aea +gkkv++avitvPaYfndaqRqat dAg+i GLnvlRi+NepTAaa+aYGl   k++ker+vl++DlG
  CCD26563.1 106 EVEYLGEtkTFSPQEISSMVLNKMKEIAEAKIGKKVEKAVITVPAYFNDAQRQATGDAGAISGLNVLRIINEPTAAAIAYGLGagKSEKERHVLIFDLG 204
                 ******999*************************************************************************722566*********** PP

                 SSXEEEEEEEEETTEEEEEEEEEETTXSHHHHHHHHHHHHHHHHHHHHSXXGGGSHHHHHHHHHHHHHHHHHTTTSSCSEEEEEEEEEETTTEEEEEEE CS
       HSP70 195 ggtfdvSilelekGvfevkaTagDthlGGedfDealvehlveefkkkegidlskdkkalqrlkeaaekaKkeLSsskqteinleietvdedgkdlsekl 293
                 ggtfdvS+l++  Gv+ vk+T+g+thlGG+dfD++l+eh+  efkkk+g+d+s d +al+rl++aae+aK++LSs   t++++e+++++e g+d++ +l
  CCD26563.1 205 GGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKGEFKKKTGLDISGDARALRRLRTAAERAKRTLSS--VTQTTVEVDSLFE-GEDFEASL 300
                 ***************************************************************************..688888999****.******** PP

                 EHHHHHHHHHHHHHHTHHHHHHHHHHCTEEGGGCSEEEEESGGGGSHHHHHHHHHHTT.CHHBSSSHTTTHHHHHHHHHHHHHCTC...GCSHCCEEEE CS
       HSP70 294 sRakfeelvedllertlepvekalkdaklkkeeidevvlvGGstRiPkvqelvkelfg.kepsktvnpDeavaiGAAvqagvlsge...eevkdllllD 388
                 +Ra+fe+l++ l++ tlepve++lkdak++k +idevvlvGGstRiPkvq+l++++f+ k+++k++npDeava+GAAvq+++l+g+    e+kdllllD
  CCD26563.1 301 TRARFEDLNASLFKSTLEPVEQVLKDAKISKTQIDEVVLVGGSTRIPKVQKLLSDFFDgKQLEKSINPDEAVAYGAAVQGAILTGQstsDETKDLLLLD 399
                 *********************************************************88**************************9777799******* PP

                 BESS-EEEEETTTEEEEEESTTCBSSEEEEEEEEESSTTSSSEEEEEEESSSSBGGGSEEEEEEEEECESSCSTTCSEEEEEEEEETTSCEEEEEEETT CS
       HSP70 389 vtpLslgietlggvmtkliernttiptkksqvfstaadnqtaveievlqgerelvkdnkllgsfeldgippaprGvpqieVtfdidanGiltvsakdke 487
                 v pLslg+ ++g+++  + +rntt+pt k ++f+t+adnqt+v+  v+qger   k+n+llg+f+l++ipp+p+G+p +e  f++danGil+v+a +k+
  CCD26563.1 400 VAPLSLGVGLQGDIFGIVVPRNTTVPTIKRRTFTTCADNQTTVQFPVYQGERVNCKENTLLGEFDLKNIPPMPAGEPVLEAIFEVDANGILKVTAVEKS 498
                 *************************************************************************************************** PP

                 TCCEEEEEEECCSS.SBHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH..GGGSTHHHHHHHHHHHHHHHCHT..TSSCHHHHHH CS
       HSP70 488 tgkeeeitieaseg.lseeeiekmvkdaeesaeedkkkkeaieakneaeelvyslekkleee..aekvseaekekvesaieeLkeel..eeeekeeiea 581
                 tgk+++iti+++ g ls++eiekmv++aee++++d++ +++ ea++++e++v s+e+++++   ++k+++ +k+k+e+a+++  ++l  e+++++++++
  CCD26563.1 499 TGKTSNITISNAVGrLSSDEIEKMVSQAEEFKAADEAFAKKHEARQRLESYVASIEQTVTDPvlSSKLKRGSKSKIEAALADALSALsiEDSSTDDLRK 597
                 ************999**********************************************9999************9988766665224555999999 PP

                 HHHHHHHHHHHHH CS
       HSP70 582 kteelkkvvekia 594
                 +   lk+vv+k +
  CCD26563.1 598 AEVGLKRVVTKAM 610
                 9999999888876 PP

>> MreB_Mbl  MreB/Mbl protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0     0.008        36       3      33 ..       9      47 ..       7      69 .. 0.72
   2 !   52.9   0.2   5.5e-18   2.5e-14      76     316 ..     123     377 ..     117     384 .. 0.77

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.008
                EEEEEE-SSEEEE..EETTTEEEEEE......ES-EEEE CS
    MreB_Mbl  3 dlgiDLGtantlv..yvkgkgivlne......psvvAik 33
                 +giDLGt+   v  y +   i+ ne      ps vA++
  CCD26563.1  9 AIGIDLGTTYSCVatYESSVEIIANEqgnrvtPSFVAFT 47
                69*******999866777788888874444446666655 PP

  == domain 2  score: 52.9 bits;  conditional E-value: 5.5e-18
                 HHHHHHHHHHHTSS-S.S--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSS...S-EEEEEE-SS-EEEEEEETTEEE.E CS
    MreB_Mbl  76 ellkyfikkvkkkksl.skprvvicvPsgiteverrAvkeaakkaGarevllieeplaAAiGaglpveep...sgnmvvdiGggttevavislggiv.t 169
                 +++ + +k+++++k+  + ++ vi+vP   ++ +r+A  +a    G +   +i+ep aAAi  gl   ++   +  ++ d+Gggt +v+++ ++g v t
  CCD26563.1 123 SMVLNKMKEIAEAKIGkKVEKAVITVPAYFNDAQRQATGDAGAISGLNVLRIINEPTAAAIAYGLGAGKSekeRHVLIFDLGGGTFDVSLLHIAGGVyT 221
                 566666677777555426789****************************************88887654411156799*************98664414 PP

                 EEE....ES-SHHHHHHHHHHHHHHHHSEE--HH...HH...HHHHHHH-BSS--HHHH....EEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHH CS
    MreB_Mbl 170 sks....vrvaGdeldeaiikyirkkynlliGer...ta...ekikieigsavkeeeee....kmeikGrdlvtglpkevevsseevrealkepvsaiv 254
                  ks     +++G+++d +++++ + +++   G      a   ++++++   a+ +        +++++   l +g   e++++ ++ ++  ++ +++ +
  CCD26563.1 222 VKStsgnTHLGGQDFDTNLLEHFKGEFKKKTGLDisgDAralRRLRTAAERAKRT---LssvtQTTVEVDSLFEGEDFEASLTRARFEDLNASLFKSTL 317
                 4442233689*************99998777754111230013334443333333...133469999999***************************** PP

                 HHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHS.S-EEE-SSTTTHHHHHHH CS
    MreB_Mbl 255 eavkevLektppeLaadivdrgivltGGgallkgldkllseetg.lpvkvaedpltcvakGtg 316
                 e v++vL++++  +++  +d+ +vl+GG++ +  ++klls+ ++  + + + +p ++va G++
  CCD26563.1 318 EPVEQVLKDAK--ISKTQIDE-VVLVGGSTRIPKVQKLLSDFFDgKQLEKSINPDEAVAYGAA 377
                 *******9875..56666665.7888***************9962457788899999999986 PP

>> FGGY_C  FGGY family of carbohydrate kinases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     6e-07    0.0027     127     196 ..     312     382 ..     270     384 .. 0.82

  Alignments for each domain:
  == domain 1  score: 17.5 bits;  conditional E-value: 6e-07
      FGGY_C 127 aleavalqlrailealekdsgkpldrlavdGGgskndllmqllAdilg.vpVerpkt.aeatalGaAilAav 196
                 ++ ++   + ++l+  +  s+ ++d+++++GG ++ + +++ll d +  + +e+  + +ea+a GaA+ +a+
  CCD26563.1 312 LFKSTLEPVEQVLKDAKI-SKTQIDEVVLVGGSTRIPKVQKLLSDFFDgKQLEKSINpDEAVAYGAAVQGAI 382
                 344444445555555544.5999************************98999999888**********9986 PP

>> FtsA  Cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1    0.0077        35       1      36 [.      10      42 ..      10     155 .. 0.77
   2 ?    8.3   0.1   0.00066         3       4     102 ..     202     374 ..     199     377 .. 0.65
   3 ?    0.7   0.2      0.15   6.9e+02      37      70 ..     515     547 ..     480     604 .. 0.59

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0077
                EEEEE-SSSEEEEEEETTEEEEEEEES-.-HHHHHHH CS
                xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxx RF
        FtsA  1 alvDiGagktdvavaedgalvhlrvigv.ggngitkd 36
                +++D+G++ ++va +e      +++i   +gn +t +
  CCD26563.1 10 IGIDLGTTYSCVATYES----SVEIIANeQGNRVTPS 42
                58**************9....7888877777777755 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.00066
                 EE-SSSEEEEEEETTEEEE.....EEEES--HHHHHHH...................HHHHHT--HHHHHHHHHHH--S--.................. CS
                 xxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxx...................xxxxxxxxxxxxxxxxxxxxxxxx.................. RF
        FtsA   4 DiGagktdvavaedgalvh.....lrvigvggngitkd...................iakalrtaveeAerikikyGsala.................. 60 
                 D+G+g+ dv++++  + v+     +    +gg+ ++                      a+alr    +Aer k++  s+ +                  
  CCD26563.1 202 DLGGGTFDVSLLHIAGGVYtvkstSGNTHLGGQDFDTNllehfkgefkkktgldisgDARALRRLRTAAERAKRTLSSVTQttvevdslfegedfeasl 300
                 777777777777775544444433223333666666666666677777777777666678999999999999987777777777777777777776666 PP

                 .........................EEEEEHHHHH......GGGGSTTHHHHHHHHHT-..HH.HT-GGGHHHH CS
                 .........................xxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxx RF
        FtsA  61 .........................ekeigrkels......ggsalpnleelaeralspklee.vsdpeyasal 102
                                          + +i++ +++      g++ +p++++l+++ +  k+ e   +p  a+a+
  CCD26563.1 301 trarfedlnaslfkstlepveqvlkDAKISKTQIDevvlvgGSTRIPKVQKLLSDFFDGKQLEkSINPDEAVAY 374
                 6666666666666666666655555444444444499999999***********99955533335666666555 PP

  == domain 3  score: 0.7 bits;  conditional E-value: 0.15
                 HHHHHT--HHHHHHHHHHH--S--...EEEEEHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxx RF
        FtsA  37 iakalrtaveeAerikikyGsala...ekeigrkels 70 
                  +  + + v++Ae+ k    +a +   +k+  r++l+
  CCD26563.1 515 SSDEIEKMVSQAEEFK----AADEafaKKHEARQRLE 547
                 5667788899999999....22223432222223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       903  (0.0503653); expected 358.6 (0.02)
Passed bias filter:                      596  (0.0332422); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.30s 00:00:00.94 Elapsed: 00:00:00.43
# Mc/sec: 4277.44
//
Query:       CCD26564.1  [L=341]
Description: hypothetical protein NDAI_0H03910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    5.2e-55  186.6   3.4      3e-54  184.1   3.4    1.9  1  Y_phosphatase    Protein-tyrosine phosphatase
    0.00044   20.1   0.1     0.0015   18.3   0.1    1.8  1  DSPc             Dual specificity phosphatase, catalytic doma
     0.0031   17.5   0.0     0.0048   16.9   0.0    1.4  1  Y_phosphatase3   Tyrosine phosphatase family
  ------ inclusion threshold ------
      0.019   15.1   0.1      0.062   13.4   0.0    1.9  2  PTPlike_phytase  Inositol hexakisphosphate


Domain annotation for each model (and alignments):
>> Y_phosphatase  Protein-tyrosine phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.1   3.4   6.7e-58     3e-54       3     234 ..      57     329 ..      55     330 .. 0.84

  Alignments for each domain:
  == domain 1  score: 184.1 bits;  conditional E-value: 6.7e-58
                    GGSSSTTS-B-CTTEEEBTTTTTTTTEEEEEEE....EECTE....EEEEEEEE---GGGHHHHHHHHHHT...T--EEEEESBSEETTEESS--- CS
  Y_phosphatase   3 eknRykdilpydksrVklkssegpsdYInAnyi....kgykk....ekkyIatQgPlkstvedFWrmvwqe...kvkvivmLtsleekgrekcaqY 87 
                     +nRy +i+py+++rV l +  + +dYInA+yi        +    + +yI tQgP+k t ++FW+m++ e   +  vivm+t l+e grekc++Y
     CCD26564.1  57 LRNRYVNIMPYERNRVAL-DVVNGNDYINASYIkvdiP---QqsinPGHYISTQGPTKYTWQQFWQMCYREcpnENIVIVMVTPLKEHGREKCYPY 148
                    58****************.666669********55442...234559**********************98777899******************* PP

                    S-......................SSTSSEEEETTEEEEEE.EEEEEESSEEEEEEEEEETTTTE.EEEEEEEEEESSS-SSSSGSCCHHHHHHHH CS
  Y_phosphatase  88 wp......................eeeeesleygkikvtlkekekedekeyvlrelevkkkkees.eerevkqlqytnWpdhgvpesaksllklir 160
                    wp                      + + +s+ + ++++++  ++++++++y+l++l++k ++++   ++ v+++ + +W d++ pe+  +++kl++
     CCD26564.1 149 WPmggqsdvikvapriqcpggdknRPNTTSTFFSELQIEYI-TSEKHDDNYTLTTLNLKPTNPKLgPPKLVHHFYFDKWRDMSKPEEVIPIMKLCN 243
                    **999999999999999988543222233555555666666.56668889999999999988887667788************************* PP

                    HHHHHHSTTSS-EEEECSSSSHHHHHHHHHHHHHHHHHH....HSE.EEHHH........HHHHHHTTSTTSS-SHHHHHHHHHHHH CS
  Y_phosphatase 161 kvekskeaksgpvvVhCsaGvgRtgtfvaldillqqlea....eee.vdvlq........ivkelrkqRpgmvqtleqyiflyevil 234
                      ++ + +  +p++VhCsaGvgRtgtf+ald l++   +    e++ ++v+q        iv +lr+qR++mvq  +qyif+y+++l
     CCD26564.1 244 HSHSLN-SGGNPIIVHCSAGVGRTGTFIALDHLIHDTLDfqaqENTiLEVKQykrdlieqIVLQLRSQRMKMVQIKDQYIFIYHLAL 329
                    999999.899***********************998877554333375555566777777***********************9876 PP

>> DSPc  Dual specificity phosphatase, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   3.4e-07    0.0015      68      92 ..     247     271 ..     238     301 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 3.4e-07
                 HHHHTT-EEEEEESSSSSHHHHHHH CS
        DSPc  68 kakqkgkkvlVHCqaGisRSatlii 92 
                 ++ + g+ ++VHC aG+ R++t+i+
  CCD26564.1 247 SLNSGGNPIIVHCSAGVGRTGTFIA 271
                 55677899**************986 PP

>> Y_phosphatase3  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-06    0.0048     117     142 ..     248     274 ..     192     315 .. 0.84

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 1.1e-06
  Y_phosphatase3 117 ladee..pvlfHCtaGKDRTGvlaalll 142
                     l + +  p+++HC+aG  RTG ++al +
      CCD26564.1 248 LNS-GgnPIIVHCSAGVGRTGTFIALDH 274
                     333.246****************99854 PP

>> PTPlike_phytase  Inositol hexakisphosphate
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   0.0   1.4e-05     0.062     130     155 ..     247     276 ..     227     277 .. 0.73
   2 ?   -1.9   0.1      0.74   3.3e+03      26      55 ..     287     316 ..     282     328 .. 0.68

  Alignments for each domain:
  == domain 1  score: 13.4 bits;  conditional E-value: 1.4e-05
                      T....T-EEEEE-SSSSHHHHHHHHHHHHH CS
  PTPlike_phytase 130 e....ktalvfnCqmGrgRTTtamviatLl 155
                      +     ++++++C++G+gRT t++++  L+
       CCD26564.1 247 SlnsgGNPIIVHCSAGVGRTGTFIALDHLI 276
                      34556889***************9987776 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 0.74
                      TTT--.HHHHHHHHHHHHHHHHT-SEEEEE CS
  PTPlike_phytase  26 enlkeytgisaeeleklearlkeevlaeak 55 
                      +++ e+++ +++ +e++  +l+++ ++ ++
       CCD26564.1 287 NTILEVKQYKRDLIEQIVLQLRSQRMKMVQ 316
                      555678888888888888888877666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       512  (0.0285571); expected 358.6 (0.02)
Passed bias filter:                      297  (0.0165653); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 2405.15
//
Query:       CCD26565.1  [L=1150]
Description: hypothetical protein NDAI_0H03920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-07   31.3  13.6    2.2e-06   27.0   4.0    2.9  3  ArAE_2_N  Putative ER transporter, 6TM, N-terminal
    3.6e-06   27.1  11.1    3.6e-06   27.1  11.1    2.9  3  FUSC_2    Fusaric acid resistance protein-like
    5.9e-06   26.3   0.0    1.4e-05   25.0   0.0    1.7  1  ArAE_2    Aromatic acid exporter family member 2
  ------ inclusion threshold ------
       0.12   12.4   0.1       0.29   11.1   0.1    1.6  1  DUF441    Protein of unknown function (DUF441)
       0.25   11.1   0.8         10    5.9   0.1    2.5  2  Rbsn      Rabenosyn Rab binding domain
       0.34    9.4   3.1        5.2    5.5   1.9    2.2  2  FUSC      Fusaric acid resistance protein family


Domain annotation for each model (and alignments):
>> ArAE_2_N  Putative ER transporter, 6TM, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   4.0   7.5e-10   2.2e-06      19      98 ..     160     239 ..     149     245 .. 0.91
   2 !    9.7   0.9   0.00013      0.38     143     315 ..     245     410 ..     239     455 .. 0.73
   3 ?   -3.4   0.0       1.2   3.6e+03     203     267 ..     858     924 ..     855     947 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.0 bits;  conditional E-value: 7.5e-10
    ArAE_2_N  19 ifRswvavwvaiiLmvipptarwlGt.aayLllivsvivpsGggsvivfilialllllgiclawawaviamkianrarpda 98 
                 +f+  +a +++i+L+vi+p+ +w+G    y+l+i + i ++  + + + + i+l+ ++g ++a  w+ +a +i+ +  p a
  CCD26565.1 160 LFKYFIAYFISIVLCVIHPSGEWIGHkYRYFLPIATLIHHP-VRNIGIQVEISLMSIIGAVFAMGWSSLAWYISTATKPTA 239
                 78999********************7258************.********************************9988774 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00013
    ArAE_2_N 143 vyavllcvflffvgrlrakspk.falgaifgiIaadvfltyapmlPlfapgtlglallkPmgiglalkvvvsll....ifPttssfqvlktmlkllkll 236
                 +++ +++++l +  +l+a ++  +++   f+i ++  f +   ++   +p +l  +l + +g++   +++vsll    ifP+ ++ q+++  ++ +  +
  CCD26565.1 245 ILFQSMIMALWLSTWLKAYYQRtLYFSLSFSIAII--FFHTVDLV--HSPDELKWILFRDFGLSYLFGILVSLLvciaIFPHFGNGQLINRFSDSIDTI 339
                 66777888999999999999987888877776555..33332222..247799999999999877777777666333379*********9999999998 PP

    ArAE_2_N 237 kkalkfnsnflatlepsnesewlnfkklekditkirslypkleaelaflplEfsigrfsaedvkelrstlrrlissiag 315
                 k  l + +      ++++e++  ++ +l+   + irsl   l  e+      +si++f+ ed+k+lr  l  l s++  
  CCD26565.1 340 KTFLICII------DKDQENKEIKLRDLQN--SMIRSLNIDLAQEFRDFLSQVSISKFKTEDLKTLRNNLTTLSSPLRV 410
                 88776643......3344444467777776..569999999999999999999**************999988877655 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 1.2
    ArAE_2_N 203 giglalkvvvsllifPttssfqvlktmlkllkllkkalk.fnsnflatlepsnese.wlnfkklekd 267
                 +ig+al++ vs l++ +  +  +  ++++ll  l+++ + ++ ++l + ++++++e  l f  +++ 
  CCD26565.1 858 LIGVALSIPVSWLVWSFRAKSELRISISSLLAYLSQSYQsVTDRYLYRDSHDAPTElTLAFAHIREV 924
                 7999999999999999999999999999999998888763677888888888888863445544443 PP

>> FUSC_2  Fusaric acid resistance protein-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   9.7     0.014        42       7     127 .]     181     315 ..     163     315 .. 0.63
   2 !   27.1  11.1   1.2e-09   3.6e-06       6     125 ..     738     865 ..     728     867 .. 0.76
   3 ?    4.5   0.3     0.012        37      30      64 ..     848     883 ..     842     895 .. 0.76

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.014
      FUSC_2   7 ellglwrgeWalitaaivlsp.tlgasltravqRilGtvlGavlallllyllpgnlala....llvfllvfliafflk..rny...alafifltllall 95 
                 e+ g+   ++++i+ +i     ++g  +   ++ i+G v+++ ++ l++y+  ++ ++a     ++f +++++ ++ +  + y   +l f +   +a++
  CCD26565.1 181 EWIGHKYRYFLPIATLIHHPVrNIGIQVEISLMSIIGAVFAMGWSSLAWYISTATKPTAshqgGILFQSMIMALWLSTwlKAYyqrTLYFSLSFSIAII 279
                 67888888889988888776579***************************7776533332333333333333333221123341323333333344444 PP

      FUSC_2  96 lyslaa....gsgnpieialhRlldvliGiliallv 127
                 ++  ++    +++  + ++    l  l+Gil++llv
  CCD26565.1 280 FFHTVDlvhsPDELKWILFRDFGLSYLFGILVSLLV 315
                 444444552444444445555577888999999875 PP

  == domain 2  score: 27.1 bits;  conditional E-value: 1.2e-09
      FUSC_2   6 aellglwrgeWalitaaivlsptlgasltravqRilGtvlGavlalllly..llpgn.lalallvfll.vfli...afflkrnyalafifltllallly 97 
                 +++++ +++ W ++++++  +  +++ +++++ Ri+  ++G+++++++ +   ++++ +++ ++++++  f i   +f  +r+ + ++i++t++al  +
  CCD26565.1 738 YRWYQEYQCWWCPMIFFMLSHSRYSGQWNTLIRRICFGLIGIFWGWAANQsrHFSNSfVVATFAGLIViPFAInhlIFYNTRSSFTGMICFTIIALEPF 836
                 4678889*****************************************972233344433334433331333355444445666888999999998777 PP

      FUSC_2  98 slaa.gsgnpieialhRlldvliGilial 125
                 s  + ++ + ++ +++  l+ liG+++++
  CCD26565.1 837 SKGNqTTSKIWKNTWTTGLALLIGVALSI 865
                 766678889999*************9987 PP

  == domain 3  score: 4.5 bits;  conditional E-value: 0.012
      FUSC_2  30 gasltravqRilGtvlGavlallllyllpgn.lala 64 
                  +++t++++ ++G++l + +++l++ +  ++ l + 
  CCD26565.1 848 KNTWTTGLALLIGVALSIPVSWLVWSFRAKSeLRIS 883
                 679**********************76554435554 PP

>> ArAE_2  Aromatic acid exporter family member 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   4.8e-09   1.4e-05       6     176 ..     876    1063 ..     875    1149 .. 0.75

  Alignments for each domain:
  == domain 1  score: 25.0 bits;  conditional E-value: 4.8e-09
      ArAE_2    6 akrlvrktlaktlselgdlyckvlsfaaerlenphihikaerdqirkkilev..leklaglkgllvllkfElslkGrwpskkyarlqalvselvqll 100 
                  ak  +r ++++ l  l++ y++v++    r  ++++ ++ +    +++i+ev  ++++  ++ ll++++ E+s+  ++ps ky++l++ ++ l++  
  CCD26565.1  876 AKSELRISISSLLAYLSQSYQSVTDRYLYRD-SHDAPTELT--LAFAHIREVrlTQNIEAIRDLLKMARNEPSFVYEYPSLKYKELIDSCQFLMERI 969 
                  67778999********************955.888888888..77777776611678**************************************99 PP

      ArAE_2  101 arLlvvlkrle..peewlkrllrrvglldpeliadvlavlsmasqaLktGdpLPeilpapLvkr..hlellrkqlklee..............s 176 
                      v  + +e   + + ++  r    l    ++ v+ v++++s+  ++++  P+ lp  ++ r   +++ +k   +                +
  CCD26565.1  970 IEARVSGSFFEvwDRDLDNETTRALLSLRRDSVSSVIFVFYILSNCFRSKNKIPKYLPNCVLARkkLFDFIDKFEHERTyynnnaveennntaQ 1063
                  98777666665434444555555566678999*************************9655543113555555444444554444444333331 PP

>> DUF441  Protein of unknown function (DUF441)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   9.8e-05      0.29      19      90 ..     796     864 ..     788     879 .. 0.76

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 9.8e-05
      DUF441  19 viaalvllllkllklekllpllekkglelGviiltiavLvPiatgkislkellealkslkgliallvgilva 90 
                 v+a++  l++  + +++ l + ++++   G+i+ ti  L P+ +g+ +++++++++  +++ +all+g++ +
  CCD26565.1 796 VVATFAGLIVIPFAINH-LIFYNTRSSFTGMICFTIIALEPFSKGNQTTSKIWKNT--WTTGLALLIGVALS 864
                 44554444444444444.45677788889************************997..88888888888765 PP

>> Rbsn  Rabenosyn Rab binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.028        85      21      36 ..     390     405 ..     387     408 .. 0.89
   2 ?    5.9   0.1    0.0035        10      23      41 ..     517     535 ..     516     536 .. 0.93

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.028
        Rbsn  21 rfDEvatLeeNLkELq 36 
                 + ++++tL  NL+ L+
  CCD26565.1 390 KTEDLKTLRNNLTTLS 405
                 89**********9886 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.0035
        Rbsn  23 DEvatLeeNLkELqeEidr 41 
                 DE++ Le+N++ L+++i++
  CCD26565.1 517 DEMDNLERNMTKLKKRIYN 535
                 9***************986 PP

>> FUSC  Fusaric acid resistance protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.9    0.0017       5.2     426     498 ..     246     321 ..     208     341 .. 0.82
   2 ?    2.7   0.0     0.012        36     124     183 ..     846     905 ..     827     944 .. 0.74

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0017
        FUSC 426 lLvlvlapplllgglllarprlagiglglavffalllapqnamtydfat...flnsalAlllGvllaavvfrlirp 498
                 l+  ++++++l  +l +  +r+ +  l++++ ++++  ++  ++ d      f + +l+ l+G+l++++v  +i+p
  CCD26565.1 246 LFQSMIMALWLSTWLKAYYQRTLYFSLSFSIAIIFFHTVDLVHSPDELKwilFRDFGLSYLFGILVSLLVCIAIFP 321
                 4555678999999999999**********9999998888888887765522278****************999988 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.012
        FUSC 124 vFdiAvaRvseIvlGIvCaalVsalvfPrsvapalrarlrallrdalalaaaalageega 183
                 ++   ++     ++G+  ++ Vs+lv++ +++ +lr ++++ll+ +++  +++ ++   +
  CCD26565.1 846 IWKNTWTTGLALLIGVALSIPVSWLVWSFRAKSELRISISSLLAYLSQSYQSVTDRYLYR 905
                 555555666667899999999999999999999999999999988888887777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1150 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1073  (0.0598472); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.29s 00:00:01.14 Elapsed: 00:00:00.47
# Mc/sec: 7399.03
//
Query:       CCD26566.1  [L=780]
Description: hypothetical protein NDAI_0H03930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.2e-58  198.6   3.7    1.2e-58  198.6   3.7    4.3  4  LIM_bind        LIM-domain binding protein


Domain annotation for each model (and alignments):
>> LIM_bind  LIM-domain binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   7.7    0.0044        78     161     187 ..      24      57 ..       4      98 .. 0.49
   2 !  198.6   3.7   6.5e-63   1.2e-58       1     241 []     283     597 ..     283     597 .. 0.89
   3 ?   -3.0   5.8      0.24   4.3e+03     161     210 ..     607     666 ..     600     672 .. 0.70
   4 ?   -1.5   1.0      0.08   1.4e+03     158     188 ..     671     701 ..     640     746 .. 0.52

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0044
    LIM_bind 161 spkvskkvskrqg.......ifgklsskepaeep 187
                 +++ s++++++q+       + ++++++++++++
  CCD26566.1  24 QTQPSQQQLYQQQqqqqqqqQQQQQQQQQQQQQQ 57 
                 1233333333333100001111111222222222 PP

  == domain 2  score: 198.6 bits;  conditional E-value: 6.5e-63
    LIM_bind   1 lrllelierlsnrsnedsdieyWrkfvaefFspdavlrltlkldeqekepkqFeittpllPryfrtlfesgvkslqlildgareqvlsngsivlecdka 99 
                 lr++e+i+ +++++++ ++++yW++f+ e F+++++++++ k+   +++ +qFe+  pl+P +++ l + gv+++++i+++++ q lsngsi++ +++ 
  CCD26566.1 283 LRFYEIINKINTSAGKITSLSYWETFAYESFTKNSIVKYSKKS---STDFRQFEFLLPLIPLILVNLGKLGVIRIEIIVQQLKSQLLSNGSIFFSSPRS 378
                 79*****************************************...89*************************************************** PP

    LIM_bind 100 tfvytyedgsrvvlegqlrvlfdadlkIewlefavrsheeliprsalekklkqllesa.........................ssaspkvskkvskrqg 173
                 t+ y+y+dgs+++++ q+++lf+++lkI+w++++++s++++i+++a ek++++  ++                                          
  CCD26566.1 379 TIAYHYPDGSYITHFVQIKGLFNPNLKIKWFDLCMHSFVPGIEWNAFEKLISNEGKAYeifqklsqssssqpsvpmaasntnnD--------------- 462
                 **************************************************9888777788877555544444433333222220............... PP

    LIM_bind 174 ifgklsskepaeepp.........................................................................eavkqlpsspv 199
                             + +                                                                         +a++ql+s++ 
  CCD26566.1 463 ----------HHN-NditkkmeikkeentlnedtngkedkkpinqhdnenyikkeekiniesqspsqlgnstndkykhaeesdlppnfDAITQLRSYFT 550
                 ..........222.1244445555566666777777788888999999*************************************************** PP

    LIM_bind 200 n.....sfGitesvmrfLeiaevmssmkdLmsfskknnilsPleaLk 241
                 +      +G +e++mr++++++vmss+kdL  f+k n i+sPleaL+
  CCD26566.1 551 VfrnvsVYGTQEGLMRIMQVGTVMSSLKDLKIFQKINGIKSPLEALD 597
                 *********************************************96 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 0.24
    LIM_bind 161 spkvskkvskrqg.ifgklsskepaeepp........eavkqlpsspvn.sfGitesvmr 210
                 s +++++++++q    +   + +p+++++        e  + + ss++n ++ i+ ++m+
  CCD26566.1 607 SSQMNNNQNQNQNqNYNHNTERKPNGPSRhtnyspipENYHAQNSSNQNnNNNIHFNFMN 666
                 445666666666545555555555555557888888888888888888878888888886 PP

  == domain 4  score: -1.5 bits;  conditional E-value: 0.08
    LIM_bind 158 ssaspkvskkvskrqg.ifgklsskepaeepp 188
                 ++++++ ++++++r + +++++++k +++ pp
  CCD26566.1 671 NNNNNNNNNNTLNR-KpMVTGKRNKDHQGIPP 701
                 22222223333333.33455555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4252  (0.237158); expected 358.6 (0.02)
Passed bias filter:                      776  (0.0432818); expected 358.6 (0.02)
Passed Vit filter:                       175  (0.00976072); expected 17.9 (0.001)
Passed Fwd filter:                        62  (0.00345808); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.39u 0.40s 00:00:01.79 Elapsed: 00:00:00.52
# Mc/sec: 4548.28
//
Query:       CCD26567.1  [L=275]
Description: hypothetical protein NDAI_0H03940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.3e-17   62.2   4.3    6.3e-17   62.2   4.3    3.7  3  PAPA-1    PAPA-1-like conserved region


Domain annotation for each model (and alignments):
>> PAPA-1  PAPA-1-like conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   3.5      0.44   7.9e+03      83      83 ..      79      79 ..      19     126 .. 0.66
   2 ?   -1.6   3.1      0.27   4.8e+03      47      64 ..     139     156 ..     108     163 .. 0.59
   3 !   62.2   4.3   3.5e-21   6.3e-17       1      80 [.     166     271 ..     166     274 .. 0.77

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 0.44
                - CS
      PAPA-1 83 p 83
                 
  CCD26567.1 79 E 79
                0 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.27
                 XXXXXXXXXXXXXXXXXX CS
      PAPA-1  47 kaaaeaeeeeeeaeeaer 64 
                 +++ ++e+eeee +e+e+
  CCD26567.1 139 TNKPQEEDEEEELHEQEQ 156
                 222333333333232222 PP

  == domain 3  score: 62.2 bits;  conditional E-value: 3.5e-21
                 XXXXHHHHHHHHHHHHHHHHHHHHHHXHHHHHHXXXXXXXXXX.........................XXXXXXXXXXXXXXXXXXX......--S... CS
      PAPA-1   1 EqalrraEmarrRknqsekrleeekaeTInkLLkkqagkkkkkkk.......................akaaaeaeeeeeeaeeaer......pap... 67 
                 Eq+lrraE  r+R+n+ ek+ eeek +T+nkLLk++agk+ k+ k                       +       + +++++ a++      p     
  CCD26567.1 166 EQQLRRAEILRKRRNLKEKKVEEEKRDTLNKLLKRRAGKASKNTKpspgrppknsrnlskisdtkaddD------GNGNDDDNAADDfhkgrrPYNsdg 258
                 99**************************************999889******99999999986554331......222222222222444544322567 PP

                 -EEEEE-SS-EEE CS
      PAPA-1  68 liRwvsnkdGsvl 80 
                 +iR++ +++G+  
  CCD26567.1 259 MIRTIITQKGTLY 271
                 **********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2422  (0.135088); expected 358.6 (0.02)
Passed bias filter:                      589  (0.0328518); expected 358.6 (0.02)
Passed Vit filter:                       141  (0.00786435); expected 17.9 (0.001)
Passed Fwd filter:                        59  (0.00329076); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.26u 0.39s 00:00:01.65 Elapsed: 00:00:00.53
# Mc/sec: 1553.99
//
Query:       CCD26568.1  [L=816]
Description: hypothetical protein NDAI_0H03950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.7e-33  116.1  17.3      9e-31  107.2   8.6    2.4  2  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.4   2.1e-06     0.037       2      65 ..     421     500 ..     420     506 .. 0.74
   2 !  107.2   8.6     5e-35     9e-31      67     214 ..     540     687 ..     532     688 .. 0.92

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 2.1e-06
  RabGAP-TBC   2 elRgevWklllgyep.................evkrlkksekkqeksekeksklekseeskelsqIkkDvprtfpesesfk 65 
                 elR+evW +ll+++p                 ++ +lk     ++++ ++ + +e+++ + ++ +I+kDv+r  ++ ++ +
  CCD26568.1 421 ELRKEVWLFLLNVYPwdssfdersqiketlndSYLHLK-TIAINKEYDDMIDATENKYWHDQIFRIEKDVKRNDRNIDIYE 500
                 79***********************9977665333333.33444455556667777777888899********99665544 PP

  == domain 2  score: 107.2 bits;  conditional E-value: 5e-35
  RabGAP-TBC  67 kqgqnqLeriLkaysiynpevgYcqGmndivaplllvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvleellkkkdpklykhlkeegldlel 165
                 ++   +L+ iL +y++ np++gY+qGm d+++p++ +  de+ +Fwcfv+++  ++++ ++  +++g++ ++ +l el +  +pk++khl + +  + +
  CCD26568.1 540 NPHLLKLKDILITYNNFNPNLGYVQGMTDLLSPIYYIIRDESLTFWCFVNFM--ERMERNFLRDQSGIRDQMLTLTELCQLMLPKISKHLAKCDSSNLF 636
                 556678*****************************8888*************..9*************************************9****** PP

  RabGAP-TBC 166 faikwfltlflrefpletvlrlwD.lllege...kfvllrvalailklleeel 214
                 f+++ +l +f+ref+++ v+ +w+ +l   +   +f  l+++lail+++++ +
  CCD26568.1 637 FCFRMLLVWFKREFKFNDVISIWEnFLT-DYycsQF-QLFFILAILQKNSQPI 687
                 ************************5555.4448455.9999*****9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       740  (0.0412739); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5656.15
//
Query:       CCD26569.1  [L=261]
Description: hypothetical protein NDAI_0H03960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.7e-53  180.6   0.0    3.6e-53  180.2   0.0    1.2  1  Flavodoxin_2  Flavodoxin-like fold
    2.1e-13   50.3   0.0    5.6e-13   48.9   0.0    1.6  1  FMN_red       NADPH-dependent FMN reductase


Domain annotation for each model (and alignments):
>> Flavodoxin_2  Flavodoxin-like fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.2   0.0   4.1e-57   3.6e-53       1     196 [.       8     214 ..       8     216 .. 0.92

  Alignments for each domain:
  == domain 1  score: 180.2 bits;  conditional E-value: 4.1e-57
                   -EEEEEE--TTGGCCHHHCHHHHHHHHHCCCTTTEEEEEEHHCC.T-----CCCCHC.............C.HHHHTT..CHHHHHHHHHHHHCSSE CS
  Flavodoxin_2   1 mkiLiinahprpeksfssalaqafvealekagphevtvrdLyad.flpvlttrdlaa.............k.layeek..padveseqiekllaada 80 
                   +k+Li+++hp+  ksf+++l++a v+ le++g  ev+v dLy++ +  ++t++d+ +                a +++  ++dv +eq ekl++ad+
    CCD26569.1   8 KKVLIVFGHPER-KSFNGSLLDATVKNLESQG-LEVKVSDLYRMnWKSEVTEDDFPEthekgtrlevapeSlAAFQDHklTPDVVAEQ-EKLEWADL 101
                   79**********.8******************.9*******************************9988624444444545*******.******** PP

                   EEEEEE-BTTB--HHHHHHHHHHS-TTTSCEETTCSSCCCCTTTTSEEEEEEEESS-GGGSSTTSSS-S-HHHHHHH.HHHHHHHTT-EEEEEEEEE CS
  Flavodoxin_2  81 ivlqfPlwwfgvPailKgwiDrvltagfafyteeggegrgggLkgkkalvivttGgpeesyqerglegaamdellpp.lrgilgfiGikdvepvlve 176
                   ++lqfPlww  +PailKgw+Drv++ag a+y +e+  +++g+++gkka+++v+tGg e++y++ g +g ++++ll+p  +g+l ++G++ ++p++ +
    CCD26569.1 102 VILQFPLWWTCFPAILKGWVDRVFSAGLAYYRPER--FGDGAFAGKKAMLMVSTGGAESHYSATGIHG-PINDLLFPiQHGMLFYTGMTILPPFVTY 195
                   ******************************98888..89***************************99.**************************** PP

                   SCTCCCHHHHHHHHHHHHHH CS
  Flavodoxin_2 177 gvagaedeealaealerlee 196
                    + +++d++ +   le+l++
    CCD26569.1 196 SAYNITDNK-FNSILEDLYN 214
                   977888654.7777777766 PP

>> FMN_red  NADPH-dependent FMN reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   6.2e-17   5.6e-13       2     126 ..       9     162 ..       8     166 .. 0.85

  Alignments for each domain:
  == domain 1  score: 48.9 bits;  conditional E-value: 6.2e-17
                 EEEEEES--STT-HHHHHHHHHHCCT-T.T-CEEEEETTTS..--......---HCHGHT...................CGGSHHHHHHHHHHHH-SCE CS
     FMN_red   2 kilvisGSlrkgsntrklaewaaealkeagaevelidladl.ilpc....alcdkdlese...................gqtsddvaellekiaaadal 76 
                 k+l+++G + ++s++  l+++  + l+ +g+ev++ dl  +  +      +++                          ++  +dv +  ek+++ad +
  CCD26569.1   9 KVLIVFGHPERKSFNGSLLDATVKNLESQGLEVKVSDLYRMnWKSEvtedDFPE-----ThekgtrlevapeslaafqdHKLTPDVVAEQEKLEWADLV 102
                 8********************************999999986666455554444.....244456999999999999998888899999********** PP

                 EEEEEECTTCE-HHHHHHHHCHT-..........SSCHCCTT-EE.EEEEE-SSTTTTHH CS
     FMN_red  77 iivtPeYngsysgllKnalDrlsr.........trgkkelrgKpv.alvavgggrrgglr 126
                 i+  P ++  ++++lK   Dr+           + g+ +++gK + ++v++gg +++ ++
  CCD26569.1 103 ILQFPLWWTCFPAILKGWVDRVFSaglayyrpeRFGDGAFAGKKAmLMVSTGGAESHYSA 162
                 **********************889*******9889999996655166699999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       642  (0.0358079); expected 358.6 (0.02)
Passed bias filter:                      543  (0.0302861); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 1907.91
//
Query:       CCD26570.1  [L=180]
Description: hypothetical protein NDAI_0H03970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-11   42.5   0.1      9e-11   41.9   0.1    1.3  1  Hpt       Hpt domain
  ------ inclusion threshold ------
       0.04   13.9   0.2      0.074   13.1   0.2    1.5  1  MtlR      Mannitol repressor


Domain annotation for each model (and alignments):
>> Hpt  Hpt domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.1     1e-14     9e-11       2      66 ..      33      95 ..      32     111 .. 0.83

  Alignments for each domain:
  == domain 1  score: 41.9 bits;  conditional E-value: 1e-14
                HHHHHHHHHHHHHHHHHHHH.SCCHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHCTSCH CS
         Hpt  2 llelfleeaeelleqleqal.dqedlqelaraaHtLKGsagmlGltelaelahelEdlldragele 66
                l+ +++++ae+ ++q+e++l + +dl +l ++ H LKGs++ lGl+++a +++++++l +   +le
  CCD26570.1 33 LIIQYIDQAETVFNQIEEHLqSTKDLTQLDSLGHFLKGSSAALGLQRIAWVCERIQNLGR---KLE 95
                66789***************5555*********************************543...333 PP

>> MtlR  Mannitol repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.2   8.3e-06     0.074      76     129 ..       3      56 ..       1      80 [. 0.81

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 8.3e-06
        MtlR  76 skevyeDielfiqlkeelnedekeyeFsddeildfikelhlvsekslleleeek 129
                  +++ +Di ++  l+e ++ d+++ +Fs + i+++i++ ++v ++   +l+++k
  CCD26570.1   3 PHSIPQDIINWTILNEIISMDDDDPDFSKQLIIQYIDQAETVFNQIEEHLQSTK 56 
                 566779*********************************999995544444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       669  (0.0373138); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1317.51
//
Query:       CCD26571.1  [L=310]
Description: hypothetical protein NDAI_0H03980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-27   95.4   0.0    4.3e-27   94.2   0.0    1.7  2  Hydrolase_6      Haloacid dehalogenase-like hydrolase
    1.6e-14   54.7   0.0    2.2e-14   54.3   0.0    1.2  1  Hydrolase        haloacid dehalogenase-like hydrolase
    4.9e-13   48.9   0.0    7.9e-13   48.3   0.0    1.3  1  Hydrolase_like   HAD-hyrolase-like
    3.4e-07   30.5   0.2    0.00095   19.3   0.0    2.4  2  HAD_2            Haloacid dehalogenase-like hydrolase
  ------ inclusion threshold ------
      0.037   13.6   0.1      0.059   12.9   0.1    1.2  1  Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosph


Domain annotation for each model (and alignments):
>> Hydrolase_6  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   1.2e-30   4.3e-27       1     101 []      27     131 ..      27     131 .. 0.94
   2 ?   -3.0   0.0       2.3   8.3e+03       6      27 ..     197     218 ..     192     223 .. 0.74

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 1.2e-30
                  EEEESTTTSEETTEE-TTHHHHHHHHHHTT-EEEEEE---SS-HHHHHHHHHHTT----GGGEEEHHHHHHHHHHH....HSXXXEEEEESXHHHHHH CS
  Hydrolase_6   1 flfDidGvLwrgdkaipgaaealnalraagkpvvllTNnsskseeeyakkleklgvditeeqvvtsataaaeylkk....rkadkkvlvigeeglree 94 
                  flfD+dGvLw g++++p  +e+ln+l++ gk+++++TNns+ks+ +y kk+ ++g+++te+q++ts++a a y+++    + +++k++++ge g+ ee
   CCD26571.1  27 FLFDCDGVLWLGTHLLPRTKEILNYLTELGKKLIFVTNNSTKSRLTYTKKFASFGINVTEDQIFTSGYASAVYVRDflklQPGKDKIWIFGEAGIGEE 124
                  89*****************************************************************9999888874444677*************** PP

                  HHHTTXE CS
  Hydrolase_6  95 lkeagfk 101
                  l  +gf+
   CCD26571.1 125 LATMGFE 131
                  *****96 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 2.3
                  TTTSEETTEE-TTHHHHHHHHH CS
  Hydrolase_6   6 dGvLwrgdkaipgaaealnalr 27 
                  d ++ +++ ++pga  +++ + 
   CCD26571.1 197 DSTFPQKGMILPGAGSMVESIA 218
                  5566677788999999988765 PP

>> Hydrolase  haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   6.1e-18   2.2e-14       1     206 [.      24     264 ..      24     267 .. 0.71

  Alignments for each domain:
  == domain 1  score: 54.3 bits;  conditional E-value: 6.1e-18
                 SSEEEEESBTTTBCHH...HHHHHHHHHHCHHHHHHHHHH......HHCHHHHHHHHHHHHHHHHHHHHHHETTTEHHHHTHHHHHHHHHCHHHHHHHH CS
                 xxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase   1 iktvvfDkdGTLttge...psvedvivsaalalaaaletg......sehpigkalvaaakarsgaltgfatfigrgayaigkpewltaldippdlgaai 90 
                 ++t++fD+dG+L+ g+   p+ +++++++  +l++ l ++      s+  ++k+++ +    ++++t+ + f+   a a+  +++l+ +          
  CCD26571.1  24 YDTFLFDCDGVLWLGThllPRTKEILNYL-TELGKKLIFVtnnstkSRLTYTKKFASF----GINVTEDQIFTSGYASAVYVRDFLKLQ---------- 107
                 689************999***********.8888888888443333333333333222....444444444444446666666666666.......... PP

                 HHHHHHCHHHHHH.........................................TTHHHHHHHHHHTHHBHTTHHHHHHHHHHTTEEEEEEESSEHHHH CS
                 xxxxxxxxxxxxx.........................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
   Hydrolase  91 gsaqsqgrtvall.........................................qaralavftiadplkvkpeaaeavasLkaagievvlltgdnpeta 148
                       g++ ++                                          ++++  v++  d++  +  +a ++++L++     ++ t+ +++++
  CCD26571.1 108 -----PGKDKIWIfgeagigeelatmgfeslggidtrldepfdattspflqnglDDDVKCVIAGLDTKVNYHRLAITLQYLRKTESVHFVGTNVDSTFP 201
                 .....222222222233333333355666666777777888888999999999999**************************99777******999999 PP

                 HHHHHHTT....GGGESEEEEHHCES...STTTSHHHHHHHHHHHTSTGGGEEEEESSHH.HHHHH CS
                 xxxxxxxx....xxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxx RF
   Hydrolase 149 eraanqlG....ddyfdaviasdiet...vakpspegkvaaireLqgkpeevamVGDgvn.Daaal 206
                 ++ +   G     + ++ + ++       ++kp+ ++++ +i   + + ++++mVGD++n D++++
  CCD26571.1 202 QKGMILPGagsmVESIATSSGR---RpsyCGKPNANMLNTIISAKNLERSKCCMVGDRLNtDMKFG 264
                 9666665532422222444444...2456*********************************9876 PP

>> Hydrolase_like  HAD-hyrolase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   2.2e-16   7.9e-13       2      74 ..     228     304 ..     227     305 .. 0.90

  Alignments for each domain:
  == domain 1  score: 48.3 bits;  conditional E-value: 2.2e-16
                     .STTSSHHHHHHHHHH---GGGEEEEES-TTTHHHHHHHCT-EE.EEESSSSS-TTTHHH..HH.HHHT---SEEES CS
  Hydrolase_like   2 lgKPepemydfalevlgsdpeevlmiGDrlatDiagAnnaGwks.vLVltGvtrpedlee..pe.hkptyvaddlae 74 
                     +gKP++ m+  +  + ++++++++m+GDrl+tD++++ + ++ + +LVl+G++++e++ e  ++  +p+y++d+l +
      CCD26571.1 228 CGKPNANMLNTIISAKNLERSKCCMVGDRLNTDMKFGVEGKLGGtLLVLSGIETEERALEinEAyPRPKYYIDTLGD 304
                     9****************************************9765*******999998886533259******9987 PP

>> HAD_2  Haloacid dehalogenase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.1   0.00051       1.8      78     120 ..      39      84 ..      36      97 .. 0.73
   2 !   19.3   0.0   2.6e-07   0.00095      87     166 ..     179     262 ..     168     267 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.6 bits;  conditional E-value: 0.00051
       HAD_2  78 vkpydgvkelLeeLkeagyklgivTsksrea...veekleqlgies 120
                 +++++  ke+L++L+e g kl  vT++s+++    ++k++ +gi+ 
  CCD26571.1  39 THLLPRTKEILNYLTELGKKLIFVTNNSTKSrltYTKKFASFGINV 84 
                 6788999*******************97664111455555555555 PP

  == domain 2  score: 19.3 bits;  conditional E-value: 2.6e-07
       HAD_2  87 lLeeLkeagyklgivTsksreaveekleqlgiesyFdvivtsedvekk...KPdpeviekaleklklkkeeviyvGDsp.tDie 166
                 +L++L++ +    + T+ ++   ++++   g  s+ + i ts+    +   KP+++++++++   +l+++++ +vGD   tD++
  CCD26571.1 179 TLQYLRKTESVHFVGTNVDSTFPQKGMILPGAGSMVESIATSSGRRPSycgKPNANMLNTIISAKNLERSKCCMVGDRLnTDMK 262
                 788888888888888888888888888888999999999999988887888***************************999997 PP

>> Acid_phosphat_B  HAD superfamily, subfamily IIIB (Acid phosphatase)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   1.7e-05     0.059     118     167 ..      42      91 ..      38      99 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 1.7e-05
                      ECCHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHHHHHCT-TTBSCCEEE CS
  Acid_phosphat_B 118 ipgalelikkvverGvkiffvsgRseeqkaaTvenLkkagfssweklilk 167
                      +p ++e +++++e+G k++fv++ s +++    +++ + g++ +e+ i+ 
       CCD26571.1  42 LPRTKEILNYLTELGKKLIFVTNNSTKSRLTYTKKFASFGINVTEDQIFT 91 
                      7999***********************88888889999998888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      386  (0.0215294); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.27s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2224.60
//
Query:       CCD26572.1  [L=453]
Description: hypothetical protein NDAI_0H03990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 3436.44
//
Query:       CCD26573.1  [L=508]
Description: hypothetical protein NDAI_0H04000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.2e-79  267.3   0.0      3e-79  266.8   0.0    1.2  1  Amidohydro_1  Amidohydrolase family
    2.5e-07   30.5   0.1    6.8e-05   22.5   0.0    2.2  2  Amidohydro_3  Amidohydrolase family


Domain annotation for each model (and alignments):
>> Amidohydro_1  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.8   0.0   3.4e-83     3e-79       2     343 ..      93     502 ..      92     503 .. 0.95

  Alignments for each domain:
  == domain 1  score: 266.8 bits;  conditional E-value: 3.4e-83
                   EEE-EEEEEEECETTECSSS....GHHHHH...........STTHHHHHHHHHHHHHHHHTTEEEEEEEEHSSTHHHHHHHHHHHTSSSEEEEEEES CS
  Amidohydro_1   2 vlPGlIDaHvHleqsllrga....tledwl...........vppetaaealesgiktalksGtttvadmgattstgiealleaaeelplglrilggk 83 
                    +PG+ID+H+H++q++++g+    tl+dwl           ++  +a+e++++ ++++l++Gttt+ ++ + + +++++l + +++   ++r+l+gk
    CCD26573.1  93 FFPGFIDTHIHASQYPNSGIfgnsTLLDWLeiytfpleaslENLTIAEEVYNKIVQRTLSHGTTTASYFATIDLEATKLLSKICSKK--NQRALIGK 187
                   58********************************************************************************99998..******** PP

                   SEGGS.......GCCCSHHHHHHHHHHHHHHHHHHCTTTCEEEEEEECGTCCSHHHHHHHHHHHHHHH.TTEEEEEETSSCHHHHHHHHHHTTTEEE CS
  Amidohydro_1  84 vsldr.......gsaetskasreklkagaaetikgkadgvvkvalapheapafsdeelkealkeakkr.dlpvaiHaletkgevedaeaafgetieh 172
                   v++dr       +s+e+s++s  +l+++ ++ +k   +  v + l p++ap++s+e++ ++ +  k++ +l++++H++e+k e+++++  f+    +
    CCD26573.1 188 VCMDRnsppyyiESTEQSIESSIELIDYLENNLK---NPQVLPVLSPRFAPSCSNELMLQLTNISKAYnNLHIQTHLSENKREIKWVSSLFP---NC 278
                   ************999*************855555...55788**************************************************...** PP

                   ETTTTSTCCHHTTTHCCEEEHCTCEEEHHHHHHHHHHHHHHCEEHHHHHHHHSEHHHHHHHHHHHHTSCEEEEEECTTSSCCGGHHHHHHHHHHHHH CS
  Amidohydro_1 173 gthlevaeslglldeiklilahgvhltpteaellkerlkeagvahcpfsnsilrsgrealrkaldeGvkvglgtDgaasgnslnlleelrlalklqr 269
                   + +++v+++++ll+  k+ilah+vhl+p+ea l+k+r  ++g++hcp sns+l+sg ++++++l++++kv+lgtD +++g s+++l + r+a ++++
    CCD26573.1 279 ENYTDVYDKYHLLTN-KTILAHCVHLSPKEASLIKQR--NSGISHCPISNSSLTSGECNVKWLLNQNIKVSLGTD-VSAGYSCSILNSARHAHLVSK 371
                   ***************.*********************..************************************.************999999999 PP

                   HCCTT..............TTHCHCHHHHHHHHHTHHHHHHTT-TTTSSSS-TTSB--EEEECC..CT............................. CS
  Amidohydro_1 270 gllye..............deegglslkealrmaTingAkalglddkvGsievGkdADlvvvdl..di............................. 321
                   +l++               +e++ ls+ e+l++aT++gA++l ++dk+Gs+e Gk++D  ++dl   +                             
    CCD26573.1 372 HLAMHsskttdtsydntesVEDVELSVPECLYLATMGGARVLDMEDKLGSFEIGKQFDGQLIDLetESsnvdiftwqypkpgnsrsernevlqnqhp 468
                   8888777788888888999999******************************************87115566799999999**************** PP

                   ............CGGGTTTCTSEEEEEEEETTEE CS
  Amidohydro_1 322 ............laafvglkkdgnvkkvivkGkl 343
                               +a+++++ +d+n++ v+v+Gkl
    CCD26573.1 469 rkllststfddlIAKWFFTGDDRNTVAVWVGGKL 502
                   ********************************96 PP

>> Amidohydro_3  Amidohydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0008       7.2      11      21 ..      94     104 ..      91     111 .. 0.84
   2 !   22.5   0.0   7.6e-09   6.8e-05     359     439 ..     334     427 ..     310     500 .. 0.89

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0008
  Amidohydro_3  11 lPGFvDsHtHl 21 
                   +PGF+D H+H 
    CCD26573.1  94 FPGFIDTHIHA 104
                   7*********3 PP

  == domain 2  score: 22.5 bits;  conditional E-value: 7.6e-09
  Amidohydro_3 359 pvkellnagvkvalgsDapvgpfdpwpri..gaavmrktrrgg...........evlrpdeelsleealalyTrgpAkalgledrkGtLevGad 439
                   +vk+lln+++kv+lg+D   g  +++     +a++ +k  ++            +   +d els+ e+l l T g+A++l +ed+ G+ e+G++
    CCD26573.1 334 NVKWLLNQNIKVSLGTDVSAGYSCSILNSarHAHLVSKHLAMHsskttdtsydnTESVEDVELSVPECLYLATMGGARVLDMEDKLGSFEIGKQ 427
                   699**************77777777665511555666666666889999****9999999********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       586  (0.0326845); expected 358.6 (0.02)
Passed bias filter:                      420  (0.0234257); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.25s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 3539.04
//
Query:       CCD26574.1  [L=498]
Description: hypothetical protein NDAI_0H04010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   8.4e-105  350.1   0.0   1.2e-104  349.7   0.0    1.1  1  G6PD_C    Glucose-6-phosphate dehydrogenase, C-terminal domai
    5.7e-59  199.7   0.0      2e-58  197.9   0.0    1.9  3  G6PD_N    Glucose-6-phosphate dehydrogenase, NAD binding doma


Domain annotation for each model (and alignments):
>> G6PD_C  Glucose-6-phosphate dehydrogenase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.7   0.0  1.3e-108  1.2e-104       2     286 ..     197     481 ..     196     492 .. 0.96

  Alignments for each domain:
  == domain 1  score: 349.7 bits;  conditional E-value: 1.3e-108
                 HHHHS-STTSTTSSTTTEEEEEEEEEESS--TTTHHHHTTTHHHHHTTTTHHHHHHHHHH----SSSSHHHHHHHHHHHHTTB----G...GG.EEEEE CS
      G6PD_C   2 vlRfaNalfeplwnrnyidhvqitvketlgvegrggYydeaGalrDvvqnHllqllalvamepPasldaedirdekvkvLkslrplkleevekkvvrGq 100
                  +Rf+N+l+++ wn+++ +++qi++ke +g+egrggY+d++G++rDv+qnHllq+l+l++m++P+s+d+e++rdekvk+Lk+++pl++   ++ +v+Gq
  CCD26574.1 197 QMRFSNTLLNASWNKENLQSIQISFKEAFGTEGRGGYFDSIGIIRDVMQNHLLQILTLLTMDTPRSFDSEAVRDEKVKILKAIKPLNR---ND-IVIGQ 291
                 69************************************************************************************98...45.9**** PP

                 E.....E--TGS-STTSTTS-TT----SEEEEEEEB-STTTTT-EEEEEEESSBSS-EEEEEEEE---SS-SS---.--EEEEEEESS-EEEEEEEEE- CS
      G6PD_C 101 YaagavkgkevkgYreeegvakdSkteTfvalkleidnerwagVPfylrtGKrLnekkteiriqfkkvpsdlfkkkerneLviriqpdeaislklnakk 199
                 Y  g++++ ++++Y+++++v+++Sk+ T++a+ ++idne w++VP+++r+GK Ln++k+eir+q+k+v++ +fk+  +neLvir+qp+ ++++k+nak+
  CCD26574.1 292 Y--GQSEDGTNSAYLDDPTVQANSKCVTYAAIAFNIDNEEWRDVPIIMRAGKSLNDSKVEIRLQYKSVENGVFKDIPNNELVIRVQPNPSVYMKFNAKT 388
                 *..8889999***************************************************************6656********************** PP

                 SSSE.....EEEEEEHHHHTT...---HHHHHHHHHHHT-GTTSB-HHHHHHHHHHHHHHHHHHHH...---EEEETTSSS-HHHHHHHHHHT CS
      G6PD_C 200 pgleleleeveldlsykerfk...lpeaYerLlldvlkgdqtlFvrsdeveaaWkivdpileawee...eklekYeagsrgPeeadellekdg 286
                 pgl+ +++ ++l+l+y++r++   +peaYe L+ d+l gd+++Fvr+de++ +Wk+++p+l+++e    +++e Y++gsrgP++ +e+l +++
  CCD26574.1 389 PGLSNATQITDLNLTYSSRYQnfwIPEAYEALIRDALLGDHSNFVRDDELDVSWKLFTPLLHYLEGpdaPQPEIYPYGSRGPKSLREYLVRHK 481
                 ***999*************999******************************************7799989***************9998875 PP

>> G6PD_N  Glucose-6-phosphate dehydrogenase, NAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.9   0.0   2.2e-62     2e-58       2     177 .]      15     194 ..      14     194 .. 0.93
   2 ?   -2.6   0.0      0.83   7.4e+03      99     116 ..     341     365 ..     292     368 .. 0.52
   3 ?   -3.2   0.0       1.3   1.2e+04      45      83 ..     416     458 ..     409     463 .. 0.62

  Alignments for each domain:
  == domain 1  score: 197.9 bits;  conditional E-value: 2.2e-62
      G6PD_N   2 ifGasGdLakrkllPaLyelaregllpeevrivgvarsklsdeefrekvkealkkekekeeldeekleeflkrleyvsgdleeeeeyekLkekleele. 99 
                 ifGasGdLak+k++PaL+ l+reg l+++++i+g+ars+l+ +++++++k++lkk + +   d+ek eef+k l+yvsg ++++e +++L++ +++ e 
  CCD26574.1  15 IFGASGDLAKKKTFPALFGLFREGYLDKSTKIIGYARSQLTIDDLKTRIKQYLKKPNGT--QDDEKEEEFFKMLSYVSGPYDTDEGFDTLNALVQTFEs 111
                 9****************************************************765544..488999****************************9996 PP

      G6PD_N 100 ..a....nrlfYlavppslfeevaeklkkaglakeeewkrvvvEKPfGkdlesarelneelkkvfkeeqiyrIDhYLGketvqN 177
                   +    +rlfYla+pp++f +va+++kk  + +ee+ +r++vEKPfG+dles+r+l+++l+ +fkee+++rIDhYLGke v+N
  CCD26574.1 112 daKveipHRLFYLALPPNVFLDVAQQIKKC-VYSEEGITRIIVEKPFGHDLESSRNLQNSLSPLFKEEELFRIDHYLGKELVKN 194
                 5515666**********************7.66679***********************************************9 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.83
      G6PD_N  99 e.......anrlfYlavppslfeev 116
                 +       + rl Y +v   +f+++
  CCD26574.1 341 KslndskvEIRLQYKSVENGVFKDI 365
                 1222222357788888888888777 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 1.3
      G6PD_N  45 efrekvkealkkekekeeldee...kleeflkrleyvsg.dle 83 
                 ++++ +++al  ++++   d+e   +++ f+  l+y++g d+ 
  CCD26574.1 416 AYEALIRDALLGDHSNFVRDDEldvSWKLFTPLLHYLEGpDAP 458
                 5666666666544433333333455899999999999885555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       547  (0.0305092); expected 358.6 (0.02)
Passed bias filter:                      464  (0.0258799); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 3589.00
//
Query:       CCD26575.1  [L=1068]
Description: hypothetical protein NDAI_0H04020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-36  125.1   1.9    1.8e-35  122.0   0.3    2.8  2  RhoGAP    RhoGAP domain
    3.2e-24   84.9  55.1    1.9e-09   37.6   8.5    5.0  4  LIM       LIM domain
     0.0049   17.1   5.0        0.2   11.9   0.1    3.8  3  DUF2757   Protein of unknown function (DUF2757)
  ------ inclusion threshold ------
       0.28   10.9   8.1        1.5    8.5   8.1    2.2  1  Siva      Cd27 binding protein (Siva)


Domain annotation for each model (and alignments):
>> RhoGAP  RhoGAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.1     0.072   3.2e+02      47      78 ..     417     449 ..     371     471 .. 0.75
   2 !  122.0   0.3     4e-39   1.8e-35       1     149 [.     807     960 ..     807     963 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.072
                 TTTTSCHHHHHHHHHHHHHHSS.STTTTGGHHH CS
      RhoGAP  47 dleeedvhavaslLKrfLrelp.epLltkelye 78 
                  le+++ +  a++L +fLre + + L+ ++ ++
  CCD26575.1 417 ALESDKKNHSANVLLKFLREVEkNELFERQPFS 449
                 566666677788888888887514566555555 PP

  == domain 2  score: 122.0 bits;  conditional E-value: 4e-39
                 BHHHHHHHHHHHHHTTTSTTTTTS-S-HHHHHHHHHHHHHTGGGCTTTTTSCHHHHHHHHHHHHHHSSSTTTTGGHHHHHHHHHTSSSHHHHHHHHHHH CS
      RhoGAP   1 PiivekcvefiekrgldtegiyRvsgskarvkelreafdkgkavdsdleeedvhavaslLKrfLrelpepLltkelyeelieaaksedeeerlealkel 99 
                 Piiv+++++ +++ ++ +egi+R++g+ ++++e+ +afd++ ++  dl++e+v  +++lLK+fLrelp+pLlt++ly+ +i+aak e+e+++ +++  +
  CCD26575.1 807 PIIVDELLSTLRNMDMSVEGIFRKNGNIRKLREISNAFDSNINTIPDLSKENVMLLSALLKKFLRELPDPLLTRRLYQLWINAAKCESESDKRRSFFLI 905
                 9*******************************************99***************************************************** PP

                 HTTS-HHHHHHHHHHHHHHHHHHHTHHH.....H---HHHHHHHHHHHHHT-TSS CS
      RhoGAP 100 lekLPkenrdtLryLlehLkrvaenske.....nkMtaknLaivfaPtLlrpkse 149
                 ++ LP  nr+t ++Ll++L++ ++ s+       kM+++nL++v+aP++l +++e
  CCD26575.1 906 YSMLPIYNRNTTEVLLSFLYWTSSFSHIenemgSKMDIHNLSTVIAPNVLYDPTE 960
                 ************************999999999*****************99875 PP

>> LIM  LIM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   8.5   4.2e-13   1.9e-09       1      57 [.      36     118 ..      36     119 .. 0.86
   2 !   24.0   9.7   7.2e-09   3.2e-05       1      56 [.     123     176 ..     123     178 .. 0.95
   3 !    5.7   1.2    0.0038        17       1      27 [.     182     210 ..     182     211 .. 0.77
   4 !   34.2  12.5   4.9e-12   2.2e-08       1      56 [.     461     519 ..     461     521 .. 0.88

  Alignments for each domain:
  == domain 1  score: 37.6 bits;  conditional E-value: 4.2e-13
                 -TTT--BE-...................TTTEEEEETTEEEETTTSB-TTT-SB-CTT.CEEETTE.......EEEHHHHHHH CS
         LIM   1 CagCnkkia...................drelvlkaldkvwHeeCFtCsdCqkeLkegsfyekdgk.......lyCkkdylkk 57 
                 C++C+k+i                    +++ vlkal++++He+CFtC dC++ Lk+++f  kd++       l+C+++y+k+
  CCD26575.1  36 CHRCKKPIFpsnnnnnnnnnnsnknnnnKSNSVLKALGHYYHEHCFTCHDCSTLLKPKYFPYKDETsdsnekiLLCQYHYFKR 118
                 88888888888888888888888888886777789************************77777755899999*******997 PP

  == domain 2  score: 24.0 bits;  conditional E-value: 7.2e-09
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT.CEEETTEEEEHHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegsfyekdgklyCkkdylk 56 
                 C+ C+++ +  + +  a ++++ ee+F C  C+++   +++++ +++lyCk+++lk
  CCD26575.1 123 CHVCDNPLRGLYFT--AFGERYDEEHFSCIICKTPCGVKKCFMFNDQLYCKYHFLK 176
                 9********88888..9*************************************87 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0038
                 -TTT--BE-TTTEEEEETTE..EEETTTS CS
         LIM   1 CagCnkkiadrelvlkaldk..vwHeeCF 27 
                 C+gC+ +i+d+++     ++  +wH+eC+
  CCD26575.1 182 CNGCHYPISDQYIEFPRGNDiyCWHPECY 210
                 99*******999886444433479***95 PP

  == domain 4  score: 34.2 bits;  conditional E-value: 4.9e-12
                 -TTT--BE-TTTEEEEETTEEEETTTSB-TTT-SB-CTT.....CEEETT.EEEEHHHHHH CS
         LIM   1 CagCnkkiadrelvlkaldkvwHeeCFtCsdCqkeLkegs....fyekdg.klyCkkdylk 56 
                 C++Cn++i+  + ++++ d +wH +CF+Cs+C+k ++ ++    +y+k+  + +C+++ ++
  CCD26575.1 461 CKSCNRYIQ--KECIQFHDYRWHLQCFKCSSCHKLINVTDvtdtTYNKELnRTLCSDCSID 519
                 *********..55557********************9988877788888889******987 PP

>> DUF2757  Protein of unknown function (DUF2757)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   4.5e-05       0.2      34      60 ..      15      41 ..       5      53 .. 0.87
   2 !    4.5   0.5     0.009        40      21      73 ..     423     480 ..     413     483 .. 0.72
   3 ?   -1.9   0.0      0.94   4.2e+03      28      43 ..     680     695 ..     675     700 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 4.5e-05
                HHHHHHTSSS-TT-S-EEEE--HHHHH CS
     DUF2757 34 eeerqdmieyeengdikvkviCedCqe 60
                + +++++i+++++g+++++ iC  C++
  CCD26575.1 15 NSQQTQLINTQSSGSVDIRKICHRCKK 41
                567889*******************97 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.009
                 T---SS---SSSSHHHHHHTSSS-TT-S-EEEE....--HHHHHHHHHTT.TSS-S-- CS
     DUF2757  21 eieeealgfnkLteeerqdmieyeengdikvkv....iCedCqealernp.dyhelet 73 
                 + +++++ +++L e e++++ e +   +i++++     C +C++ ++++  ++h++  
  CCD26575.1 423 KNHSANVLLKFLREVEKNELFERQPFSNIRLSInttdCCKSCNRYIQKECiQFHDYRW 480
                 45566677999************99988875432233799999988876437777765 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 0.94
                 --SSSSHHHHHHTSSS CS
     DUF2757  28 gfnkLteeerqdmiey 43 
                  f+kL++++ ++m++ 
  CCD26575.1 680 HFKKLKDNDEEEMLNP 695
                 599**********975 PP

>> Siva  Cd27 binding protein (Siva)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   8.1   0.00033       1.5     120     170 ..     456     518 ..     445     520 .. 0.59

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00033
        Siva 120 ddkavcsqcerllckqcvr...........tcsscsalac.slctlvdysdeyekvlctscsv 170
                 +  ++c  c+r++ k+c++           +cssc  l+  +  t++ y  e +++lc+ cs+
  CCD26575.1 456 NTTDCCKSCNRYIQKECIQfhdyrwhlqcfKCSSCHKLINvTDVTDTTYNKELNRTLCSDCSI 518
                 444555555555555554322222333111567776666414467777888999*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1637  (0.0913046); expected 358.6 (0.02)
Passed bias filter:                      453  (0.0252663); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.81u 0.29s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 6992.74
//
Query:       CCD26576.1  [L=495]
Description: hypothetical protein NDAI_0H04030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.7e-51  175.3   0.0    2.3e-51  174.8   0.0    1.2  1  FAD-oxidase_C    FAD linked oxidases, C-terminal domain
      4e-35  120.6   0.0    7.2e-35  119.7   0.0    1.3  1  FAD_binding_4    FAD binding domain
  ------ inclusion threshold ------
       0.15   11.7   0.0       0.27   10.9   0.0    1.3  1  ThylakoidFormat  Thylakoid formation protein


Domain annotation for each model (and alignments):
>> FAD-oxidase_C  FAD linked oxidases, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.8   0.0   3.9e-55   2.3e-51       2     249 ..     244     493 ..     243     494 .. 0.98

  Alignments for each domain:
  == domain 1  score: 174.8 bits;  conditional E-value: 3.9e-55
                    -SEEEEEEEEESSHHHHHHHHHHHHHH.T---SEEEEE-HHHHHHHHHTS-SSTTS-TTT-EEEEEEEEE-HHHHHHHHHHHHHHHTTT-EEEEE. CS
  FAD-oxidase_C   2 pearavalvafpsfeaavkavreiaqa.giipaalelmdkkaldlveatkgakkglpdeeealllvefegddeeeaeeelealveaileatgaadv 96 
                    p+a + +l++ +sfe + k + +++ +  + ++a+e+md+ +++++ +++g++ +l +++++++l+e++g+++ +++e+lea + ++le   +a++
     CCD26576.1 244 PKALNAVLIGIDSFETVQKLFIKAKNElSEVLSAFEFMDRGSIECTIEYMGKPFPLVNSHGFYVLIETSGSNKRHDDEKLEAFLSSALETKLIAEG 339
                    888999****************************************************************************************** PP

                    .........ETGGGGGGGGHHHHHHHHHCTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHH.........EEEEEEEEEETTEEEEEEEEEEE..- CS
  FAD-oxidase_C  97 lvaqdeaeaealwkaRkaalpylrdallkagvavlseDtsvPvsrladlvrdikalldkyg.........levvlfgHagdgnlhlyilfdladea 183
                     +a+d +e + +w +Rk++       + ++++ ++++D+s+ +++l+++ +++ ++l++           ++ v +gH+gdgn+hl+i+++   ++
     CCD26576.1 340 KMAKDLDEYNLFWTWRKSVPT-----ACNSYGGMYKYDMSLQLKDLYSVSEAVTKRLNDASmigdapkpvVKSVGYGHVGDGNIHLNIAVRHFTKE 430
                    *********************.....89******************************************************************** PP

                    -TT--THHHHHHHHHHHHTT-----------------------THHHHHHHHHHHH-TT--BSTT- CS
  FAD-oxidase_C 184 eeeraeklvdevvdlavelgGsisgEHGvGldkkaylerekgeeglalmrriKaalDPkgiLNPgk 249
                     e+ +e++v+e    ++  +Gsis+EHGvG++kk  l+++++e +l  m+ iK++ DP+giLNP+k
     CCD26576.1 431 LEDLLEPFVYEY---IALKKGSISAEHGVGFHKKGHLHYSRSEIELRFMKDIKNHYDPNGILNPYK 493
                    ************...9999**********************************************9 PP

>> FAD_binding_4  FAD binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   1.2e-38   7.2e-35       3     136 ..      70     204 ..      68     205 .. 0.98

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 1.2e-38
                    EEEEESSHHHHHHHHHHHHHCTSCEEEESSSTTEESTTC.SCCEEEEEETTS--EEEEETTTTEEEEETTSBHHHHHHHHHHHTTECSSGGGTTCG CS
  FAD_binding_4   3 avvrpeseeevaaalrlaneaglpvlvrGgGssllgqav.atggvvldlsrlnrileideeegtatveaGvtlgdlvealaakglllglepgsgip 97 
                    +v+ p+s++ +a++++++n+++l v+++Gg ++l+g++v  ++ ++l+l+++n+i+++d+ +gt +  aGv++ d++++l++++ +++l+  s + 
     CCD26576.1  70 LVLLPKSTDKIAKIMKYCNDNKLAVVPQGGNTDLVGASVpVFDEIILSLKNMNKIRDFDPVSGTFKCDAGVVMRDAHQFLRENNHIFPLDLPSRNN 165
                    6999**********************************99*********88********************************************* PP

                    SBHHHTTTTT-EETTEEGG--HHGTEEEEEEEETTSEEE CS
  FAD_binding_4  98 gtvGGaiatnagGygsekyGlirdnvlglevvladGevv 136
                    + vGG+++tnagG +  +yG+++ +vlglevvl++Ge++
     CCD26576.1 166 CQVGGVVSTNAGGLNFVRYGSLHGTVLGLEVVLPNGEII 204
                    *************************************97 PP

>> ThylakoidFormat  Thylakoid formation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.6e-05      0.27     143     188 ..     304     349 ..     300     352 .. 0.95

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 4.6e-05
                      HHHHHHHHSBTHTTT...THHHHHHHHGGGS-S-HHHHHHHHHHHH CS
  ThylakoidFormat 143 GlftlLeeadaelvkdeekreealeklaealglskekvekDldlYr 188
                      G++ l+e++++++ +d+ek e++l++  e+  + + k+ kDld Y+
       CCD26576.1 304 GFYVLIETSGSNKRHDDEKLEAFLSSALETKLIAEGKMAKDLDEYN 349
                      99****************************9************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       465  (0.0259356); expected 358.6 (0.02)
Passed bias filter:                      429  (0.0239277); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3581.46
//
Query:       CCD26577.1  [L=271]
Description: hypothetical protein NDAI_0H04040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1993.26
//
Query:       CCD26578.1  [L=357]
Description: hypothetical protein NDAI_0H04050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-64  215.7   4.1    5.5e-64  215.2   4.1    1.2  1  DUF5341          Family of unknown function (DUF5341)
  ------ inclusion threshold ------
       0.16   12.0   0.7        1.4    9.0   0.0    2.1  2  Phage_holin_3_6  Putative Actinobacterial Holin-X, holin supe
        1.2    8.9   0.0        1.2    8.9   0.0    2.4  2  PDR_assoc        Plant PDR ABC transporter associated


Domain annotation for each model (and alignments):
>> DUF5341  Family of unknown function (DUF5341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.2   4.1   9.1e-68   5.5e-64       2     161 .]     193     350 ..     192     350 .. 0.99

  Alignments for each domain:
  == domain 1  score: 215.2 bits;  conditional E-value: 9.1e-68
     DUF5341   2 etdsantllfetelGtHvalslehdveelvndIveqvksgslgdtlakaknkslkkrtdrfeveWvSynydnsnsdlakkaeedeglegnfeeveeelq 100
                 + d++++l+++t++G+Hv ++l+ d++++vndIv+++++gsl++tl+++k+++++kr+++f+++WvSy +dn nsdlak a+ed++le+  ee++++l+
  CCD26578.1 193 DGDAMHVLQWSTPMGNHVGIHLDGDLQTMVNDIVADSAPGSLESTLRYTKTYNHTKRYNNFDAKWVSYGWDNGNSDLAKIAMEDRPLEE--EEYDKNLY 289
                 67999************************************************************************************..******** PP

     DUF5341 101 nllrnnraWKyCiavtdntkpgevedyddigeenaihgEiYfNtYGgiDsyCndnkdGaqc 161
                 + ++n++aWKyC+avtdn++pg+ e yddig+en++hgE+YfNt+GgiD+yCnd+kdGaqc
  CCD26578.1 290 TEFNNMPAWKYCWAVTDNPHPGQGEGYDDIGKENVMHGELYFNTFGGIDNYCNDSKDGAQC 350
                 ************************************************************9 PP

>> Phage_holin_3_6  Putative Actinobacterial Holin-X, holin superfamily III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00023       1.4      23      89 ..       2      92 ..       1     101 [. 0.75
   2 ?   -0.4   1.3      0.19   1.1e+03      34      47 ..     107     120 ..     100     134 .. 0.46

  Alignments for each domain:
  == domain 1  score: 9.0 bits;  conditional E-value: 0.00023
  Phage_holin_3_6 23 kaElkeeakragsgagllgaagvlallalllllvala...............lala.a........lwlaalivaavllvlagvlalvglk 89
                     k E+++ +++ +++++ +++  +++++ l +  ++ +               +al+           w+a   v ++l+ +ag+++ ++++
       CCD26578.1  2 KNEANDRRRKCLKLGVKFLIIFLFVFTFLCIKHFLTVnnenslstipvtssaVALNdNrlsprghwNWIANAAVSGFLISAAGLMGGWAIN 92
                     6677777788888888887777777777666666667899999888888887555322444556679******************999876 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.19
  Phage_holin_3_6  34 gsgagllgaagvla 47 
                      g+ ++l ++++v+a
       CCD26578.1 107 GTTLVLGAIGAVFA 120
                      22222222222222 PP

>> PDR_assoc  Plant PDR ABC transporter associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   3.9      0.36   2.1e+03      33      49 ..      16      32 ..      10      47 .. 0.77
   2 ?    8.9   0.0   0.00021       1.2      17      42 ..      55      80 ..      39      81 .. 0.88

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.36
   PDR_assoc 33 gvgallgftiLFNilft 49
                gv  l+ f ++F +l +
  CCD26578.1 16 GVKFLIIFLFVFTFLCI 32
                77788888888877765 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00021
   PDR_assoc 17 vLksrglfteaywYWigvgallgfti 42
                 L++  l +  +w Wi+ +a+ gf i
  CCD26578.1 55 ALNDNRLSPRGHWNWIANAAVSGFLI 80
                6889999*****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       604  (0.0336884); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.27s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 2599.35
//
Query:       CCD26579.1  [L=1266]
Description: hypothetical protein NDAI_0I00100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.2e-15   55.8   0.0    1.1e-14   54.7   0.0    1.5  1  Helicase_C  Helicase conserved C-terminal domain
    5.5e-06   26.3   0.0    1.2e-05   25.2   0.0    1.5  1  DEAD        DEAD/DEAH box helicase


Domain annotation for each model (and alignments):
>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.0   1.3e-18   1.1e-14      12     107 ..     656     747 ..     646     750 .. 0.88

  Alignments for each domain:
  == domain 1  score: 54.7 bits;  conditional E-value: 1.3e-18
                 HTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTS CS
  Helicase_C  12 leeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfn.kgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRt 107
                 +   ++k++i+++ + ++e  kl    +   +  +hg+lp++e+++  ++f  +++++++i t+ +++Gidi+ v+lVi++d+  ++ +yiq +GR 
  CCD26579.1 656 EYDTKSKVIIVCKEKVTVE--KLY---FRQDSEWVHGDLPSEEKIKKSRRFIeDDKCRIMIGTKLVSEGIDIKAVKLVIMLDYLPSIGEYIQTAGRL 747
                 567889************5..444...6678999*****************8578999**************************************6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.3e-09   1.2e-05       8     169 ..     429     587 ..     425     593 .. 0.77

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.3e-09
                 HHHHHTTCEEE.EEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEH CS
                 xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   8 iplilgggdvl.vaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtp 105
                 +++ l+g +++ ++a  G G T+ f+ip+++  y   g++++  ++ +P   L  ++  +l++++ ++++   l+++g a   + ++l   +d++vgt 
  CCD26579.1 429 VEIYLSGTQIIpIQALPGFGETALFQIPLVALSY---GDKKTVSFVFVPYVCLLSNMKLRLSSCGINCGILKDLFVNGPAV--EEKDL--FCDVYVGTF 520
                 56677777777799****************8887...6888899***********************99777788888777..33344..59******* PP

                 HHHHH.HH....HCTSSHCTTE..EEEEEETHHHHHHT.TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSB CS
                 xxxxx.xx....xxxxxxxxxx..xxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 106 grldd.ll....stgklnlsqv..rflVlDEadrlldq.gfsdfinrilnqlpqitcdgklqrqvivlSATl 169
                   l +  +    ++ +  ++++   ++V+DE ++l  + +++ +  r++ ++     + +l  +v+v++ T+
  CCD26579.1 521 NDLGSeNFvrlvNNWYNIYQDCilGMIVIDEFHNLETEqSYRGQSFRLIPEI-----NFNLAWKVVVMTGTA 587
                 66666322344355553377765588*********98878888888888888.....334445699998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1266 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       467  (0.0260472); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.27s 00:00:01.05 Elapsed: 00:00:00.45
# Mc/sec: 8451.56
//
Query:       CCD26580.1  [L=144]
Description: hypothetical protein NDAI_0I00110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.1e-52  177.5  11.6    2.4e-52  177.4  11.6    1.0  1  DUF5341   Family of unknown function (DUF5341)
  ------ inclusion threshold ------
       0.11   11.9   0.1       0.11   11.9   0.1    1.0  1  Vac17     Vacuole-related protein 17


Domain annotation for each model (and alignments):
>> DUF5341  Family of unknown function (DUF5341)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4  11.6   2.7e-56   2.4e-52      24     161 .]       2     137 ..       1     137 [. 0.99

  Alignments for each domain:
  == domain 1  score: 177.4 bits;  conditional E-value: 2.7e-56
     DUF5341  24 ehdveelvndIveqvksgslgdtlakaknkslkkrtdrfeveWvSynydnsnsdlakkaeedeglegnfeeveeelqnllrnnraWKyCiavtdntkpg 122
                 ++d ++++ndIv+++++gsl++t +++k+++l+kr ++f+v+W+S+nydn n+dl k+a+ed++ e+  ee++++++++++nn+aWKyC++v +n++ g
  CCD26580.1   2 QQDWKSMLNDIVTDSNPGSLESTIRHTKKHTLEKRWNYFDVQWISWNYDNINHDLDKQAAEDRQVEE--EEYDSAVYEYYNNNPAWKYCLSVFRNDHVG 98 
                 67999**************************************************************..****************************** PP

     DUF5341 123 evedyddigeenaihgEiYfNtYGgiDsyCndnkdGaqc 161
                 + e ydd+g  na+hgE+YfNtYGg+D+yCndnkdGaqc
  CCD26580.1  99 HEETYDDLGRDNAVHGELYFNTYGGVDGYCNDNKDGAQC 137
                 **************************************9 PP

>> Vac17  Vacuole-related protein 17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.2e-05      0.11     329     403 ..       5      80 ..       1     106 [. 0.82

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 1.2e-05
       Vac17 329 SkdLLssfvtqsakkklktensstkessffsnwnllnkfslvts.esenkteskkkakkplsnkekslsnekssss 403
                  k +L+ +vt+s++ +l+  + +tk+    + wn+++ +  + +  + n++  k+ a+  ++++e++ s+++++++
  CCD26580.1   5 WKSMLNDIVTDSNPGSLESTIRHTKKHTLEKRWNYFDVQWISWNyDNINHDLDKQAAEDRQVEEEEYDSAVYEYYN 80 
                 589*********************************6555554467777777777788888888887777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       703  (0.0392102); expected 358.6 (0.02)
Passed bias filter:                      367  (0.0204696); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 1012.44
//
Query:       CCD26581.1  [L=315]
Description: hypothetical protein NDAI_0I00120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       500  (0.0278878); expected 358.6 (0.02)
Passed bias filter:                      365  (0.0203581); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 2320.45
//
Query:       CCD26582.1  [L=444]
Description: hypothetical protein NDAI_0I00130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-75  254.4  37.4    1.8e-75  254.2  37.4    1.0  1  Aa_trans  Transmembrane amino acid transporter protein


Domain annotation for each model (and alignments):
>> Aa_trans  Transmembrane amino acid transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.2  37.4   9.8e-80   1.8e-75       2     408 ..      31     430 ..      30     431 .. 0.92

  Alignments for each domain:
  == domain 1  score: 254.2 bits;  conditional E-value: 9.8e-80
    Aa_trans   2 tssalsavlnlikaivGaGvLaLPyAfkqlGlivGlillllvallslytlllLvkcsktlasgkrnksYgdlgyrllGpkgkliidlailvqlfGvgvs 100
                 +s++ +a++n++++i GaG+++ P A+k++Gl ++++++++ +++  +tl lL+   +      ++ +Ygd+++ ++G+kgk++i  +  ++ +G +++
  CCD26582.1  31 KSNIYMAFVNMANSILGAGIITQPLAVKNAGLCASIVIYIMLGFIVDWTLRLLITNITL----SSKLTYGDTVEYTMGRKGKYLILCCNGLFALGGCIG 125
                 78999***************************************************985....489********************************* PP

    Aa_trans 101 yliligdllpaifesffdtlllsnvyfilisa.liiipLslipnlskLsylSllalvsslyyivilvlvvaelvklelkgvseetvkkasklkglflai 198
                 ++i+igd++p++++ f +++ + ++++i+ s+ +i  pLsl++++s+Ls +S+lal+s+++ iv++v+v    ++ elkg +   + ++    +lf ++
  CCD26582.1 126 FCIIIGDTIPHVLRIFIHSHFVTRNSVIFFSTlFISYPLSLLRDISALSSTSFLALISMTV-IVMTVVVFGPSLPAELKGSGIPSS-SYVASPSLFRSL 222
                 ****************999888777766666516778**********************98.799999999999999999999997.778889****** PP

    Aa_trans 199 giivFAftghavlleiqnelkdpskfkkmtkvlllsiilatvlyilvGlvGYltFGnevkgnillnlpkssilivivnlllvlhlilsfplqlhplrqv 297
                 +i+ FA ++h+++  i +++++ s  +k+tk+++ls+ +++++++++G++G+++F  ++kgnil+n+p++ + i+i++++++++++++ pl l++lr+v
  CCD26582.1 223 SIVSFALVCHHNTSFIFHSIRNKSL-TKFTKLTHLSVFISVIFCMIMGYAGFFIFTGKTKGNILNNFPPNGVAINIARVCFGFNMLTTLPLELFVLRDV 320
                 **********************777.78*********************************************************************** PP

    Aa_trans 298 venllikk..eavagasekeapkskllrlvirlllvvityliAlsvpslakvlslvGatsstplsfilPalfhlkliktek.ksleklvkkkildlici 393
                 +  +l ++    ++ +++  + +++++++++++++v++t+ ++l++++l+ +++lvGat+++ +++ilP++ +l l + +   ++++ ++     ++ci
  CCD26582.1 321 IAVILLENewIPSIEEKPGMPILTRKWHFIVTTIIVFLTMSVSLLTCNLGALFELVGATTASVMAYILPPYVNLLLRQEKEpLPIKSKIP----HYFCI 415
                 ****99984434455666667788999***********************************************9987664256666665....58*** PP

    Aa_trans 394 vlglllvfyglavli 408
                  +g+ ++++++ ++i
  CCD26582.1 416 LFGFTVMIVSSFQTI 430
                 **********99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       786  (0.0438396); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.26s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3233.75
//
Query:       CCD26583.1  [L=938]
Description: hypothetical protein NDAI_0I00140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-82  278.8  72.9    9.1e-42  143.4   0.0    5.6  3  PAT1      Topoisomerase II-associated protein PAT1
  ------ inclusion threshold ------
      0.075   13.0   0.0        1.6    8.7   0.0    2.7  2  JAB       JAB1/Mov34/MPN/PAD-1 ubiquitin protease


Domain annotation for each model (and alignments):
>> PAT1  Topoisomerase II-associated protein PAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0  72.1   4.7e-38   4.3e-34       1     532 [.       1     520 [.       1     543 [. 0.57
   2 !    6.4   0.0   0.00026       2.3     526     580 ..     578     635 ..     574     639 .. 0.75
   3 !  143.4   0.0     1e-45   9.1e-42     605     853 ..     638     927 ..     634     930 .. 0.87

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 4.7e-38
        PAT1   1 msFfgfdttlprdahntaapGfsqahdpfaglskaeeedddaldFedtYdgLgdqLdetdDafNddTFggegggdevsakkvgkdfDffgqTakvadai 99 
                 msFfgfd++ p+ +                   ++++ ++  ldF+dtY gLgd  +e++D +N +TFg++         ++g+dfDf    ++ + a 
  CCD26583.1   1 MSFFGFDPSGPKSK------------------ERNNDGGNKPLDFDDTYGGLGDYEQEEGDYLNAETFGAD--------VELGNDFDFGHSESNQSGAS 73 
                 88888888887754..................2344555789**************************633........579******88776666554 PP

        PAT1 100 eeEqlrfsrqqpaakasekaaaaelkevkkasqaseqkskpvrtgyekykepepipdlqvdaslWgvaekkaaasaaapevaaaaaslasasrkvlsle 198
                          qqp++          ++++  a+++  ++s+p        ++ +   dl++++slW  +e++ +++++       ++     + +v+s+e
  CCD26583.1  74 AT------IQQPSHV---------HRSYVAAASQGVSSSNP--------AQLDTSIDLKPMESLWTAGEQEYQQEQQ-------PQ-----QPQVMSME 137
                 33......3345442.........12222222222222222........2345667888888888666555433321.......11.....13477777 PP

        PAT1 199 EvEaamraqakkkaaqaaaaaaas.........qqPaaeqaeqaeaaaqaaka.............................................e 243
                 ++E + r+ + ++aa+++a +++          ++P++    q+  ++ ++++                                             +
  CCD26583.1 138 DIERQQRQMQMAAAAHQQAPSQQGfmqmpppphNFPMQGLPPQQPYQQDQPNSqfvnqypphmipppamqghpnqfqqmppmfnhhqsqipnpnqhypQ 236
                 777654332222222221111111222333444333333222322222222224555666677777777776654444555554433333322222221 PP

        PAT1 244 qaqqapesakeqqqeqeqaaqaqqkkeqgk....pvtilqrpqskqakpaepsasseaqe................akqqappakvq...........p 311
                              +  + + + q++++q++    p++  q pq+                                ++q +pp+++q           +
  CCD26583.1 237 -------------MYPTPPPNFQEHHGQQQqpqlPLQPPQPPQQ---------------GngysaspqtlpqpqlaHQQVSPPTTTQiqtelqppagvS 307
                 .............1111111222222222211111111222222...............1233333333334444433333333333111111111114 PP

        PAT1 312 tqilqnpnrlaarlelsqkeqaaaqaapeq...eakrqqssagkqaqiithpqqlaqlseeekaayLeeeakrak.RnhkifllskdnGlmTpqDKnFi 406
                 + il  p+  a+    +++++++a+++p q   +++ q +s ++q +     +++++  ++ ++    ee+kr++ R  k+  + k  G+mTp+DK+Fi
  CCD26583.1 308 RSILASPQSVASPR--TESNVTSASPQPLQqeqQEHYQVRSPEQQLP----VRNIQKQMQQRREPLTPEEQKRLQvRHAKVEKIMKHSGVMTPRDKDFI 400
                 55555555542221..1222222222222200022222222222333....3345555667788888899999984666******************** PP

        PAT1 407 tRiqlqqLvsAtGnpadqgsdeslseDFYYqVysqirggqrqnpeqplsnFaqTYLfqtgsRqggarrrergaenhvqrmeqqvqraVeaAKnkP.Knk 504
                 tR ql+q+v+          d+  +eDFY+qVy  i+ g     e + +  a  YL  +g R gg   r ++a+  +qrm+ qv +aV  AK++P Knk
  CCD26583.1 401 TRYQLSQIVT----------DDPYNEDFYFQVYKIIQRGGIVGGESNKGSIARAYLEHSGHRLGG---RYKRADIALQRMQSQVEKAVTVAKERPqKNK 486
                 *********9..........99***************99999********************999...68899**********************7777 PP

        PAT1 505 qLv..i...eGsLGKisf.snaktPkpLLnikrt 532
                   v  i   eG LGKis   n+k+P+  L i  +
  CCD26583.1 487 DNVekItgrEGVLGKISSaMNSKAPRRQLLIPSH 520
                 76644344589*****8526*****988877554 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.00026
        PAT1 526 LLnikrteseedakrpssakkkaksseas...ldrksiLrniEkvYstlmkledheRk 580
                 L n+  ++++++++r+s a  +  ++++      rk +L+ iE+vY+ +++le + R+
  CCD26583.1 578 LGNVEISQNSKSRRRSSYAFTSVDQNSVLsrsGGRKFVLSLIETVYREVLELEANLRS 635
                 5577777777777666666665544444346689*******************99885 PP

  == domain 3  score: 143.4 bits;  conditional E-value: 1e-45
        PAT1 605 qelneklWeeLkvhepigattvhPFiallsfpKGkkaipRifrhlskeqrvtiLtmivvhlDqLdvvrkaqvtsgetqlnaavreeielFsqavmpsLl 703
                 +  n+ lWe+L+v ++i    v PFi++l+f KG k++pRif  l+k+q++ +L     +l +L+++  ++ +++ t ++ +  ++i+lF+++ ++ ++
  CCD26583.1 638 EINNTLLWEALHVDDDIY--EVCPFISMLTFDKGVKIMPRIFNFLDKKQKLKLLQTFFSELSHLNIIIISSYKTNPT-PTDNQLKKIDLFQTVFLKIIV 733
                 5567889********996..578*********************************************999988876.55666679************* PP

        PAT1 704 ayl.neldldivtgllgliltklnvdliaktriGlslLTlllsRaellkqsgags....eeeweeweetynklFdrleptlpeiFP............. 784
                 ++l n+ ++  + gll  ++++ nv++i+ ++iGl l+T+l+sRa l++q ++ s    + e++ w+e+y+klF +le++l+++FP             
  CCD26583.1 734 SFLsNNSNFIEIMGLLLHLIKNNNVSFISTSKIGLNLITVLISRAALIRQDSNRSnglsSPEISAWNEIYDKLFTALESKLASVFPpqeyldkvlkvmd 832
                 **955677777778777777*****************************9766543444899************************************* PP

        PAT1 785 ................gsvnsgedvyvWqlLAalgigAspdqqqrLVlavkdRVldtvalsktl......PedlaaqR....lanVNLFmraiGL 853
                                 ++v+  ++ y+Wq+LA+l+++   + q  ++ +v++ ++ t++++  l       ++ a+ R     ++ NLF++ +GL
  CCD26583.1 833 eqqqqhlphynsgnspSNVQFYDQSYIWQFLASLALSGKLNHQRIIIDEVREEIFGTINAAEELlnsneiDKANATYRreklYQDLNLFLNVMGL 927
                 ************999999***********************9999999***********998773322113444555523334789****99998 PP

>> JAB  JAB1/Mov34/MPN/PAD-1 ubiquitin protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.043   3.9e+02      56      95 ..     469     506 ..     430     522 .. 0.76
   2 ?    8.7   0.0   0.00018       1.6       3      44 ..     718     758 ..     716     840 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.043
                 EESSECEEEEEHHHHHHHHHHHHHHHCTTSEEEEEEEESS CS
         JAB  56 etekdvdavsldqeylekksellkklrgrervvGWYhshp 95 
                  + ++ ++v+ ++   +k ++ ++k+ gre v+G ++s  
  CCD26583.1 469 SQVEKAVTVAKERP--QKNKDNVEKITGREGVLGKISSAM 506
                 33333344444444..78899999999*******888865 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.00018
                 SCEEEEEHHHHHHHHHHHHHHHHHTS--EEEEEEEESSSEEE CS
         JAB   3 vqavhleslvllkildhalrtekeeeevmGlliGelnddttv 44 
                 ++++ l   v+lki+  +l+++++  e+mGll+ ++++++ v
  CCD26583.1 718 LKKIDLFQTVFLKIIVSFLSNNSNFIEIMGLLLHLIKNNN-V 758
                 67889999************************99988885.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (938 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1235  (0.0688828); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        43  (0.00239835); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.32s 00:00:01.20 Elapsed: 00:00:00.48
# Mc/sec: 5869.73
//
Query:       CCD26584.1  [L=337]
Description: hypothetical protein NDAI_0I00150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.6e-93  312.1   2.6    3.3e-93  311.8   2.6    1.1  1  P34-Arc   Arp2/3 complex, 34 kD subunit p34-Arc


Domain annotation for each model (and alignments):
>> P34-Arc  Arp2/3 complex, 34 kD subunit p34-Arc
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.8   2.6   1.9e-97   3.3e-93       1     239 [.      56     311 ..      56     312 .. 0.95

  Alignments for each domain:
  == domain 1  score: 311.8 bits;  conditional E-value: 1.9e-97
                 EEEE-TTHHHHHTT.....THHHHHHHHSTTTE.....E---TTSSEEE---TTS------SHHHHHHHHHTHHHHHTSHHHHHHHTHHHH------.. CS
     P34-Arc   1 vsislkcwkelkky.....gaeellkreYgkllk....aepesgydvsllvdleelpedeeekeelikklsllkrnllaapfekafeeqeelseeke.. 88 
                 +si++k+w+++ ++     g+  +l+++++++ +    ++ esgyd++l++dl++l+      ++++ +lsl+k+ ++++pf+  f+e+ els+++   
  CCD26584.1  56 LSIRTKAWQSIATCdgnknGLLPFLESKFTSYPSvsipSSFESGYDYTLQIDLKSLD------AATVLQLSLVKTLIFNYPFHLSFSEFIELSKQQPvt 148
                 79*********999877778899*********99999999***************87......679***************************88778* PP

                 .........HHTTT-EEE--SSS--EEEEE-SSEEEEEEEE--SSSSHHHHHHHHHHHHH-----..------EEEE-SSS--S---S-------..-- CS
     P34-Arc  89 .........sekeevaaikYrddEaiyikpskdrvtvifstvFkdetDkvlgkvFLqefvdarkr..aiqsaPqvlfsekepplelrdlkeakkk..en 174
                          s+++++++i+YrddE+i+ikps+dr+tvif+t+F+detDkv+gkvFLqefvdarkr  +iqsaPqvlfs+ epplel+++++ +++  ++
  CCD26584.1 149 ddfsmsssqSTSKSLYTIRYRDDENIFIKPSNDRITVIFETIFQDETDKVFGKVFLQEFVDARKRnrSIQSAPQVLFSH-EPPLELQQHQQGSTNtdKS 246
                 *******9989999**************************************************999************.********98777445699 PP

                 -EEEEEEEEGGGG.-TTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-- CS
     P34-Arc 175 vgyvtfvLfprhlkteekrentisliqlfRnylhYHiKcsKaylhsrmRarvseflkvLnrAkpe 239
                 ++++tfvLfprh++t e +++t+++++lfRny+hYHiKcsKay+hsrmR+rv++f+kvLnrAk +
  CCD26584.1 247 RRFITFVLFPRHFQTVELQFSTVCQLTLFRNYFHYHIKCSKAYMHSRMRYRVDSFIKVLNRAKLD 311
                 9**************************************************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       711  (0.0396564); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.24s 00:00:00.71 Elapsed: 00:00:00.41
# Mc/sec: 2458.43
//
Query:       CCD26585.1  [L=530]
Description: hypothetical protein NDAI_0I00160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.4e-31  108.5   0.0    8.7e-30  104.2   0.0    2.4  2  PP2C      Protein phosphatase 2C


Domain annotation for each model (and alignments):
>> PP2C  Protein phosphatase 2C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.012   2.1e+02      28      66 ..     130     169 ..     118     195 .. 0.78
   2 !  104.2   0.0   4.9e-34   8.7e-30      66     255 ..     252     490 ..     182     493 .. 0.85

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.012
                 TCCCCCCEEEEEEEEESSS.HHHHHHHHHHHHHHHHHHHC CS
        PP2C  28 ssgkssvsffavfdghggs.eaakyarehleeilksqksf 66 
                 +++k+sv  + +fdghgg  +++k+ +e+ +e l ++   
  CCD26585.1 130 NQDKKSVLNVSIFDGHGGNgRVSKLLAESFHEELVQNNPT 169
                 466777888899*****97579999999999766665544 PP

  == domain 2  score: 104.2 bits;  conditional E-value: 4.9e-34
                 CHTTH.HHHHHHHHHHHH.HHHHHHHHHHHHCHCCT-EEEEEEEEEETTE..................EEEEEESS-EEEEEETTEEEEECS---STTS CS
        PP2C  66 feele.kleqalrksfla.dtdeelksskantepsksGstavvalirgtk..................lyvAnvGDSravLcrkgnakkeltedHkpsd 144
                 f   + +le+++    l  d d++++++++   +   Gsta+++++++ +                  l v++vGD+r++Lc+++++++ lt+ H+ps+
  CCD26585.1 252 FL--KfDLEKCCGFEKLTnDNDMSFENRIK---KFPGGSTASSIFLSSYDeslaldesffvdpkgllkLVVTQVGDTRIILCDQNGIAHPLTKIHHPSS 345
                 33..24778888777777688888888555...5899*********999999*********************************************** PP

                 HHHHHHHHHTT--EEECCEEETTT.....................BSBSB-EE-GGGTCCCC.........CCSTSB---EEE..EEEE-TTEEEEEEE CS
        PP2C 145 edEreRIeeaggsvsngegrvngs.....................LavsRalGDlelkpket.........eeqlvsaePdvt..svklteedefliLa 211
                 e+E eR++ ++g+    ++r n                       +a++Ra+GDl  k++               +s  P+++  + ++  e++f+ L+
  CCD26585.1 346 ERESERLNIDEGKRR--QKRTNLEsdenayeqdkdafgesrflnnFANTRAFGDLLGKREGLscepdiysyLVGSTSQLPHSEksKLQFGGEECFICLV 442
                 ***************..77777777899******************************96559*****999666666677666448888899******* PP

                 -HHHHTTSHHHHHHHHHHHHHHHHT....HHHHHHHHHHHHHHHCCHH CS
        PP2C 212 cdGlwdvlsdqeavdlvrdelekkk....speevaeelvdeaiargse 255
                 +dG+ d+++dqe+vdl++++++  +    +++ v+ee++++++a g +
  CCD26585.1 443 SDGVSDLMPDQELVDLITSTVNMRGlknaTAQFVSEEVIKYIQAIGGK 490
                 **********************8779999**************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      461  (0.0257125); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.27s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3878.65
//
Query:       CCD26586.1  [L=1394]
Description: hypothetical protein NDAI_0I00170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.4e-24   83.5   0.3    2.4e-23   82.2   0.3    1.8  1  Med12     Transcription mediator complex subunit Med12


Domain annotation for each model (and alignments):
>> Med12  Transcription mediator complex subunit Med12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.3   1.4e-27   2.4e-23       1      63 []     124     186 ..     124     186 .. 0.99

  Alignments for each domain:
  == domain 1  score: 82.2 bits;  conditional E-value: 1.4e-27
       Med12   1 fkpPsrvtlndakrenwlkdLadpsvpLtrLsrsvPhgfrgekLlemllrksVpisRAvWfir 63 
                 f++P+rvtl+d+++e wl++L++p v+L+++s+ +Phg++++++le++++k++p++RA+W+i+
  CCD26586.1 124 FSLPNRVTLTDHRKELWLQELSNPYVSLSKISKFIPHGLKRRQVLEQCYTKQIPLKRAIWLIK 186
                 689***********************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1394 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       866  (0.0483016); expected 358.6 (0.02)
Passed bias filter:                      301  (0.0167884); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.80u 0.27s 00:00:01.07 Elapsed: 00:00:00.46
# Mc/sec: 9167.41
//
Query:       CCD26587.1  [L=126]
Description: hypothetical protein NDAI_0I00180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1134  (0.0632495); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 989.75
//
Query:       CCD26588.1  [L=144]
Description: hypothetical protein NDAI_0I00190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.4e-26   91.2   0.2      1e-25   89.7   0.1    1.6  2  Thioredoxin      Thioredoxin
    2.2e-06   27.9   0.1    0.00032   21.0   0.0    2.3  2  Thioredoxin_8    Thioredoxin-like
    2.5e-06   27.9   0.1      8e-06   26.3   0.1    1.8  2  Thioredoxin_2    Thioredoxin-like domain
    2.6e-05   24.0   0.0      3e-05   23.8   0.0    1.1  1  Thioredoxin_9    Thioredoxin
    0.00011   22.1   0.0    0.00013   21.9   0.0    1.1  1  TraF             F plasmid transfer operon protein
    0.00039   20.3   0.1    0.00064   19.6   0.1    1.4  1  AhpC-TSA         AhpC/TSA family
    0.00089   19.0   0.1       0.13   11.9   0.1    2.2  2  Redoxin          Redoxin
  ------ inclusion threshold ------
      0.013   14.5   0.0      0.015   14.3   0.0    1.0  1  Phosducin        Phosducin
      0.035   13.5   0.0      0.038   13.3   0.0    1.2  1  OST3_OST6        OST3 / OST6 family, transporter family
      0.062   13.4   0.1      0.089   12.9   0.1    1.3  1  Toxin-deaminase  The  BURPS668_1122 family of deaminases
      0.074   12.8   0.0       0.19   11.5   0.0    1.8  1  KaiB             KaiB domain
      0.082   12.5   0.1       0.14   11.8   0.1    1.4  1  DUF953           Eukaryotic protein of unknown function (DUF9


Domain annotation for each model (and alignments):
>> Thioredoxin  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.73   1.1e+03      67     102 ..      18      53 ..       9      54 .. 0.71
   2 !   89.7   0.1   6.7e-29     1e-25      17     102 ..      58     141 ..      45     142 .. 0.93

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.73
                  HTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHHH CS
  Thioredoxin  67 kyevegiPtlklfkngkevkkyegarekeklaaflk 102
                     v  +P l+    + + ++++  +e ++l + ++
   CCD26588.1  18 SKRVLVMPILRYNSTSSSYETVKKLNELTELTKIID 53 
                  446788888888777777777777788888877776 PP

  == domain 2  score: 89.7 bits;  conditional E-value: 6.7e-29
                  TSSEEEEEEE-TTSHHHHCHHHHHHHHHHHCTTTSEEEEEETTTSHHHHHHTT-SSSSEEEEEETTEEEEEEESS-HHHHHHHHHH CS
  Thioredoxin  17 ekklvlveFyApwCghCkalaPeleklaeelkdkvklakvdvdenedlakkyevegiPtlklfkngkevkkyegarekeklaaflk 102
                  ++kl +++FyA+wC +Cka++P ++kl++e+  +v ++kvdvde+++la++++v+++Pt++l+k+g  +++++ga++ ++l++ ++
   CCD26588.1  58 NRKLSVIDFYATWCQPCKAMSPIITKLMNEHP-DVNFYKVDVDESPSLAQHCNVSAMPTFVLTKDGAIADTIVGANP-SALKKSIT 141
                  58999***************************.********************************************.99999886 PP

>> Thioredoxin_8  Thioredoxin-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   2.1e-07   0.00032       2      46 ..      60     101 ..      58     103 .. 0.89
   2 !    7.7   0.0     0.003       4.4      63      93 ..      93     122 ..      88     124 .. 0.72

  Alignments for each domain:
  == domain 1  score: 21.0 bits;  conditional E-value: 2.1e-07
                    SEEEEEE--SSSHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-SS- CS
  Thioredoxin_8   2 kvvlLyfgaswcppckaftpklkelyeklkkkkkveivyvsldkk 46 
                    k+ ++ f+a+wc+pcka+ p +++l++++    +v++  v +d++
     CCD26588.1  60 KLSVIDFYATWCQPCKAMSPIITKLMNEHP---DVNFYKVDVDES 101
                    67799************************6...899999988875 PP

  == domain 2  score: 7.7 bits;  conditional E-value: 0.003
                    E.EE-TT-HHHHTT-S--TT-SEEEEE-TT- CS
  Thioredoxin_8  63 svpfddkkrnklkkkynvkaiPtlvvldkng 93 
                    ++ +d +++  l+++ nv+a+Pt+v l k+g
     CCD26588.1  93 FYKVDVDESPSLAQHCNVSAMPTFV-LTKDG 122
                    45566667789************65.55555 PP

>> Thioredoxin_2  Thioredoxin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.6   3.8e+03      35      49 ..      19      34 ..      10      57 .. 0.50
   2 !   26.3   0.1   5.3e-09     8e-06       3     102 ..      57     134 ..      54     139 .. 0.84

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 2.6
  Thioredoxin_2 35 vrvllfp.lkpsfepk 49
                   +rvl +p l+ ++   
     CCD26588.1 19 KRVLVMPiLRYNSTSS 34
                   5555555533332222 PP

  == domain 2  score: 26.3 bits;  conditional E-value: 5.3e-09
  Thioredoxin_2   3 gngkpvlvvftdpdCpyCkklkkelkelddvtvrvllfplkpsfepkavaiwcakekkkafkdieenvelarkygvrgtPtiv.fldgkeivarlp 97 
                    +n k  +++f++++C  Ck++   + +l           ++++ +  + +++ +++++           la+  +v+++Pt+v + dg  i+++++
     CCD26588.1  57 SNRKLSVIDFYATWCQPCKAMSPIITKL-----------MNEHPDVNFYKVDVDESPS-----------LAQHCNVSAMPTFVlTKDGA-IADTIV 129
                    688999**************99999999...........6666666666666666665...........89**********88688888.****** PP

  Thioredoxin_2  98 Gyvpa 102
                    G+ p+
     CCD26588.1 130 GANPS 134
                    *9876 PP

>> Thioredoxin_9  Thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0     2e-08     3e-05      20     127 ..      37     142 ..      26     144 .] 0.77

  Alignments for each domain:
  == domain 1  score: 23.8 bits;  conditional E-value: 2e-08
                    HHHHHHHHHH---HH.HHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT.--EEEE CS
  Thioredoxin_9  20 lrvykkvelseetee.kiksiekklkilvltedwCgDaavnvPvlakiaelnpnievkillrdenlelmdqyltngaraiPtliildee.geelgv 113
                    + v k  el+e t+   +ks ++kl+++ + + wC  + ++ P++ k++++ p++++  +  de + l +     +  a Pt+++ +++  ++   
     CCD26588.1  37 ETVKKLNELTELTKIiDEKSSNRKLSVIDFYATWCQPCKAMSPIITKLMNEHPDVNFYKVDVDESPSLAQHC---NVSAMPTFVLTKDGaIADT-I 128
                    333333334444333566889999*********************************************988...5699*****9998854444.6 PP

                    EESS-HHHHH..HH CS
  Thioredoxin_9 114 wgerPaevqelvde 127
                     g  P+++++ +++
     CCD26588.1 129 VGANPSALKKSITD 142
                    78888888776655 PP

>> TraF  F plasmid transfer operon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   8.5e-08   0.00013     125     202 ..      55     122 ..      11     133 .. 0.76

  Alignments for each domain:
  == domain 1  score: 21.9 bits;  conditional E-value: 8.5e-08
        TraF 125 kklakeygLlfFyrgkcpyceaqapilqafadky.glevraVsvdgrplpelpnarvdkgqaarlgvkrtPalvlvdpk 202
                 k+   +   + Fy+  c+ c+a++pi+ ++ +++       V+vd+ p+  l++         + +v+ +P++vl +  
  CCD26588.1  55 KSSNRKLSVIDFYATWCQPCKAMSPIITKLMNEHpDVNFYKVDVDESPS--LAQ---------HCNVSAMPTFVLTKDG 122
                 44455678899*****************99999989***********99..888.........***********98765 PP

>> AhpC-TSA  AhpC/TSA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   4.3e-07   0.00064      23      79 ..      57     110 ..      38     127 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.6 bits;  conditional E-value: 4.3e-07
                 HTTSEEEEEEESTST-CCHHHHHHHHHHCHHHCCCTTEEEEEEESSSCHHHHHHHHH CS
    AhpC-TSA  23 ykgkpvvlffypkdwcpvCttelpalaklyeefkergvevigvsvdspeshkkfiek 79 
                  + k  v+ fy++ wc++C++  p + kl++e    +v+ + v vd+  s+++ ++ 
  CCD26588.1  57 SNRKLSVIDFYAT-WCQPCKAMSPIITKLMNEHP--DVNFYKVDVDESPSLAQHCNV 110
                 455899*******.******************99..899999999999988776665 PP

>> Redoxin  Redoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   8.9e-05      0.13      28      58 ..      59      88 ..      36      96 .. 0.80
   2 ?    5.2   0.0      0.01        15      91     137 ..      98     134 ..      92     143 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 8.9e-05
                TSEEEEEEESTTT-HHHHHTHHHHHTHHHHH CS
     Redoxin 28 gkkvvvnfvpgafcPtCsaehpyleklaell 58
                 k  v+ f+++ +c +C+a  p ++kl +++
  CCD26588.1 59 RKLSVIDFYAT-WCQPCKAMSPIITKLMNEH 88
                3447999****.**********999997664 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.01
                 E-TTSHHHHHTT-TTEEE.GGGEEE-EEEEEEETTEEEEEEESSSCH CS
     Redoxin  91 sDgsaaftkalGlrleedaseglrtpryavidedgkvvylevepepe 137
                 +D+s +++++ ++          ++p+ +v+ +dg +  ++v+++p 
  CCD26588.1  98 VDESPSLAQHCNVS---------AMPT-FVLTKDGAIADTIVGANPS 134
                 56777777777755.........6775.7889************994 PP

>> Phosducin  Phosducin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3   0.0     1e-05     0.015     122     212 ..      34     126 ..      20     134 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1e-05
                 ----SEEE--SHHHHHHHHH.SS-TT-EEEEEEE-TTSTTHHHHHHHHHHHHHH-TTSEEEEEEHHHH--.TTSS-TTT-SEEEEEETTEEEE CS
   Phosducin 122 prfkfvlelesgeqfldtid.keqkitlivvhiyedgvkgtealnssliclaaeyptvkfckvkasviga.sdrfsrdvlpallvykagells 212
                   ++ v +l+   ++ ++id k     l v+  y    + ++a+   +  l  e+p v f kv      + ++     ++p++++ k g +  
  CCD26588.1  34 SSYETVKKLNELTELTKIIDeKSSNRKLSVIDFYATWCQPCKAMSPIITKLMNEHPDVNFYKVDVDESPSlAQHCNVSAMPTFVLTKDGAIAD 126
                 5678888888888888888625667788899********************************9877654166677899*****999998765 PP

>> OST3_OST6  OST3 / OST6 family, transporter family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   2.6e-05     0.038      46     103 ..      71     120 ..      30     137 .. 0.84

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.6e-05
   OST3_OST6  46 CelCrefepefelvakswrkdekskskklfFakvdfdegkdvFqklglnsaPhlllfp 103
                 C++C+ + p ++++ + +         ++ F kvd+de++++ q+ +++  P ++l +
  CCD26588.1  71 CQPCKAMSPIITKLMNEHP--------DVNFYKVDVDESPSLAQHCNVSAMPTFVLTK 120
                 8888888888777776544........567************************9875 PP

>> Toxin-deaminase  The  BURPS668_1122 family of deaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1     6e-05     0.089      91     136 ..      45      93 ..      13      99 .. 0.77

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 6e-05
  Toxin-deaminase  91 leeiaeqle..knskkegsiklftel.epCdSCkgvlkqfkkkypdiqv 136
                      l+e+++ ++   +++k+  i+ ++ + +pC+  + ++ ++  ++pd+++
       CCD26588.1  45 LTELTKIIDekSSNRKLSVIDFYATWcQPCKAMSPIITKLMNEHPDVNF 93 
                      455555565423455677899997765899999**************87 PP

>> KaiB  KaiB domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.19      33      56 ..      94     117 ..      74     137 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00013
                 EEEETTTSHCHHCCTCEESCCCCC CS
        KaiB  33 qvvdvleqPelaeedrlvatPaLi 56 
                   vdv e P la++  + a+P+ +
  CCD26588.1  94 YKVDVDESPSLAQHCNVSAMPTFV 117
                 459*******************87 PP

>> DUF953  Eukaryotic protein of unknown function (DUF953)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.2e-05      0.14       7      72 ..      47     104 ..      38     120 .. 0.75

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.2e-05
                 HHHHHHHH..TSSSEEEEEEB--B-TTS-BSSHHHHHHHHHHHHHHHH-SS-EEEEEEE---HHHH CS
      DUF953   7 efekslkelekeskivfilFlgekdteGesWCPdCvkaepvieealkeapedvklvrvdvGdrevW 72 
                 e++k + e+++++k  +i F++        WC  C +  p+i++ ++e p dv++ +vdv + ++ 
  CCD26588.1  47 ELTKIIDEKSSNRKLSVIDFYA-------TWCQPCKAMSPIITKLMNEHP-DVNFYKVDVDESPSL 104
                 4455555566666777777776.......6**************999987.899****99988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       628  (0.0350271); expected 358.6 (0.02)
Passed bias filter:                      471  (0.0262703); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 1014.18
//
Query:       CCD26589.1  [L=182]
Description: hypothetical protein NDAI_0I00200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    3.4e-27   94.6   6.1    3.4e-27   94.6   6.1    1.6  2  Csm1_N      Csm1 N-terminal domain
    1.2e-21   77.1   0.1      2e-21   76.4   0.1    1.4  1  Csm1        Chromosome segregation protein Csm1/Pcs1
    0.00068   19.7   3.1     0.0012   18.9   3.1    1.4  1  TPR_MLP1_2  TPR/MLP1/MLP2-like protein
    0.00076   19.6   4.8     0.0012   19.0   4.8    1.3  1  ADIP        Afadin- and alpha -actinin-Binding
     0.0011   19.4   3.4     0.0024   18.3   3.4    1.5  1  DUF16       Protein of unknown function DUF16
     0.0024   17.7   0.2     0.0037   17.1   0.2    1.3  1  Spore_YpjB  Sporulation protein YpjB (SpoYpjB)
     0.0027   17.5   3.4     0.0044   16.8   3.4    1.4  1  Phage_GP20  Phage minor structural protein GP20
      0.009   15.9   4.2      0.094   12.6   2.8    2.0  2  SKA1        Spindle and kinetochore-associated protein 1
  ------ inclusion threshold ------
      0.013   14.0   1.8      0.017   13.6   1.8    1.1  1  S6OS1       Six6 opposite strand transcript 1 family
      0.044   13.0   5.6      0.062   12.5   5.6    1.2  1  HAP1_N      HAP1 N-terminal conserved region
       0.05   13.1   3.1      0.076   12.5   2.5    1.6  2  DegS        Sensor protein DegS
       0.11   11.8   2.9      0.075   12.3   1.4    1.5  2  DUF3450     Protein of unknown function (DUF3450)
       0.23   11.5   7.5       0.66   10.1   0.1    2.4  2  DUF5094     Domain of unknown function (DUF5094)
       0.47   10.5   8.1        0.1   12.6   4.4    1.8  2  Sec2p       GDP/GTP exchange factor Sec2p
       0.51   11.0   5.3       0.18   12.5   2.3    1.9  2  SlyX        SlyX
        0.8   10.2   6.1        3.1    8.3   4.8    2.4  2  NPV_P10     Nucleopolyhedrovirus P10 protein
       0.83   10.1   5.5        8.7    6.8   5.1    2.4  2  FlaC_arch   Flagella accessory protein C (FlaC)


Domain annotation for each model (and alignments):
>> Csm1_N  Csm1 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   6.1   3.3e-30   3.4e-27       1      70 []       4      73 ..       4      73 .. 0.99
   2 ?   -2.7   0.0       7.5   7.9e+03      24      35 ..     139     150 ..     135     154 .. 0.51

  Alignments for each domain:
  == domain 1  score: 94.6 bits;  conditional E-value: 3.3e-30
      Csm1_N  1 mDpLteYKesVqerldsAdllvsklvhENsvLsqkletkdqeiesLkeqlaeleekvkeleerrkkqeEe 70
                mDpLt+YK+s+qerld+Ad+lvskl+ ENs+L+++++t++qe++sLk+q+++l+e+++ ++++++kq+E+
  CCD26589.1  4 MDPLTTYKRSIQERLDAADVLVSKLTLENSLLNTAVDTHKQEVQSLKKQVKTLNEQLDGSKTSNEKQKET 73
                9*******************************************************************96 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.5
      Csm1_N  24 klvhENsvLsqk 35 
                 + v+E ++L+ +
  CCD26589.1 139 RTVEELRILQDQ 150
                 445555555544 PP

>> Csm1  Chromosome segregation protein Csm1/Pcs1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.1   1.9e-24     2e-21       2      83 ..      76     163 ..      75     164 .. 0.93

  Alignments for each domain:
  == domain 1  score: 76.4 bits;  conditional E-value: 1.9e-24
        Csm1   2 lkedlyedLtGlivrsvkedesedvfdciqtgrngtlhfkLaisk...efeeaeisYvPlldesrdkell...elLPdYLveeitFpr 83 
                 +++dl+e+L+ ++v++ +ed+++ +fd++q++  g++++kL + k   + ++++++YvPll++++ +el    ++LP Y++++++Fp 
  CCD26589.1  76 VIKDLFEHLCEVRVHKSYEDDTGLWFDISQGSDIGIMDYKLGFVKgesDNSDTDVIYVPLLKQRTVEELRilqDQLPSYMFDTLSFPL 163
                 789******************************************9744444****************99999*************97 PP

>> TPR_MLP1_2  TPR/MLP1/MLP2-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   3.1   1.1e-06    0.0012      60     103 ..      33      76 ..       8      86 .. 0.85

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.1e-06
  TPR_MLP1_2  60 qalreelnelkaeiaelkaeaesakaeleeseesweeqkeelek 103
                 + l++ +++ k+e+++lk+++++++++l+ s+ s e+qke+le 
  CCD26589.1  33 SLLNTAVDTHKQEVQSLKKQVKTLNEQLDGSKTSNEKQKETLEV 76 
                 5678889999*******************************995 PP

>> ADIP  Afadin- and alpha -actinin-Binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   4.8   1.1e-06    0.0012      76     134 ..      25      83 ..       7      88 .. 0.90

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.1e-06
        ADIP  76 ierlktqleqlerelalvqakerqlekklktleqklknekeelqrlknalqqiktqyah 134
                 +++l+ +++ l + +++++++ ++l+k++ktl+++l + k +++++k +l+ ik  ++h
  CCD26589.1  25 VSKLTLENSLLNTAVDTHKQEVQSLKKQVKTLNEQLDGSKTSNEKQKETLEVIKDLFEH 83 
                 689999**********************************************9988877 PP

>> DUF16  Protein of unknown function DUF16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   3.4   2.3e-06    0.0024      26      92 ..       8      81 ..       4      88 .. 0.84

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 2.3e-06
                HHB-..BHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHHH..............HHHHHHHHH CS
       DUF16 26 nefkdsnkqrLkkieakvdklgeqinkleqkvekqgekikelkveqkaqgeeln.......kvdetleliletL 92
                  +k s ++rL   +  v+kl  + + l+ +v++  ++++ lk+++k+ +e+l+       k++etle+i +  
  CCD26589.1  8 TTYKRSIQERLDAADVLVSKLTLENSLLNTAVDTHKQEVQSLKKQVKTLNEQLDgsktsneKQKETLEVIKDLF 81
                56999999999999999999999999999999999999999999999999999988877778888888876554 PP

>> Spore_YpjB  Sporulation protein YpjB (SpoYpjB)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2   3.5e-06    0.0037     140     209 ..      38     109 ..      25     119 .. 0.91

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 3.5e-06
  Spore_YpjB 140 kidleeeelqrvdskisvleke.rfqqvsesekreeLeeleedlqalFd.evkedeadpSllwviisigsii 209
                  +d++++e+q+++++++ l+++ + ++ s+++++e Le ++  +++l + +v+++  d+  lw+ is gs i
  CCD26589.1  38 AVDTHKQEVQSLKKQVKTLNEQlDGSKTSNEKQKETLEVIKDLFEHLCEvRVHKSYEDDTGLWFDISQGSDI 109
                 58999**************988899**********************9747888889*******99999855 PP

>> Phage_GP20  Phage minor structural protein GP20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   3.4   4.2e-06    0.0044      17      61 ..      36      80 ..      12      91 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 4.2e-06
  Phage_GP20 17 kakldeveeerdtlkeqlkdrdkqLedLkkkakdneeLqkqieel 61
                ++++d+ ++e+++lk+q+k+ ++qL++ k++++  +e  + i++l
  CCD26589.1 36 NTAVDTHKQEVQSLKKQVKTLNEQLDGSKTSNEKQKETLEVIKDL 80
                789999**********************99977777777777776 PP

>> SKA1  Spindle and kinetochore-associated protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   2.8   8.9e-05     0.094      13      65 ..      34      86 ..      23      95 .. 0.85
   2 ?    2.9   0.0     0.081        86     137     166 ..     149     180 ..     136     182 .] 0.84

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 8.9e-05
                ...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS
        SKA1 13 ainqdpallkedlskieaevsaleellnklkkelqeeeeaikklkkeieaslk 65
                 +n+  +++k+ ++ ++++v++l+e+l+  k+  ++++e+++ +k+++e  ++
  CCD26589.1 34 LLNTAVDTHKQEVQSLKKQVKTLNEQLDGSKTSNEKQKETLEVIKDLFEHLCE 86
                4577788999************************************9999996 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.081
                 TTS-HHHHSS--..HHHHHHHHHHHHHHHHHH CS
        SKA1 137 esipsYmkGRLt..lekiNaaidelnkaveak 166
                 +++psYm   L+  l+ +N++ ++++k +++k
  CCD26589.1 149 DQLPSYMFDTLSfpLKSLNQFYTKMAKCLNKK 180
                 579999999997447999**999999999988 PP

>> S6OS1  Six6 opposite strand transcript 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.8   1.6e-05     0.017     170     233 ..      26      90 ..      10     100 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 1.6e-05
       S6OS1 170 etltkkslelkkeadelEikinylkkqiarllesknlsevleekn.kelekrkelkerifeedeh 233
                 ++lt + + l+ ++d    ++++lkkq+++l e+   s++ +ek+ ++le  k+l e + e   h
  CCD26589.1  26 SKLTLENSLLNTAVDTHKQEVQSLKKQVKTLNEQLDGSKTSNEKQkETLEVIKDLFEHLCEVRVH 90 
                 567888999********************************999956789999999888876655 PP

>> HAP1_N  HAP1 N-terminal conserved region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   5.6   5.9e-05     0.062     209     277 ..      16      84 ..      12      96 .. 0.91

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 5.9e-05
      HAP1_N 209 eqlseanqqiaelseelarkleelerqqeeissLlaqivdlqqklkelgveneelkqhLaaskeaqrqL 277
                 e l  a+  +++l+ e +  +  ++++++e++sL+ q+ +l+++l   ++ ne+ k+ L++ k+  ++L
  CCD26589.1  16 ERLDAADVLVSKLTLENSLLNTAVDTHKQEVQSLKKQVKTLNEQLDGSKTSNEKQKETLEVIKDLFEHL 84 
                 6788899999999999999999*****************************************987766 PP

>> DegS  Sensor protein DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.6   1.7e+03     116     140 ..      13      37 ..       7      41 .. 0.76
   2 ?   12.5   2.5   7.2e-05     0.076      29      85 ..      39      95 ..      29     104 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.6 bits;  conditional E-value: 1.6
        DegS 116 klketierAeklvsqvgvvlnyLsg 140
                 +++e ++ A+ lvs++++  ++L++
  CCD26589.1  13 SIQERLDAADVLVSKLTLENSLLNT 37 
                 5677888888899888887777765 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 7.2e-05
        DegS 29 verlkkeleelkeevsevikevdklekkerkarkrLaeVskdFkkyseeeikeaYee 85
                v+  k+e++ lk++v+++ ++ d  ++ + k+++ L  +   F++  e ++++ Ye 
  CCD26589.1 39 VDTHKQEVQSLKKQVKTLNEQLDGSKTSNEKQKETLEVIKDLFEHLCEVRVHKSYED 95
                67789**************************************************97 PP

>> DUF3450  Protein of unknown function (DUF3450)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   1.4   7.1e-05     0.075      13      74 ..      13      74 ..       3      86 .. 0.58
   2 ?   -3.4   0.0       4.6   4.9e+03      86     105 ..     139     158 ..     137     169 .. 0.63

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 7.1e-05
     DUF3450 13 alaatldqalkeaekavaaaaqsqkkidklddekqellaeyralkeeleslevyneqlerlv 74
                ++++ ld+a+   +k + + +  ++ +d  ++e q+l++++++l+e+l+  +  ne++++ +
  CCD26589.1 13 SIQERLDAADVLVSKLTLENSLLNTAVDTHKQEVQSLKKQVKTLNEQLDGSKTSNEKQKETL 74
                33555555555555555555556666666666666666666666666666666666655554 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 4.6
     DUF3450  86 eqieeieeierelvpllekm 105
                 +  ee++ ++++l  ++ ++
  CCD26589.1 139 RTVEELRILQDQLPSYMFDT 158
                 45555555666666666555 PP

>> DUF5094  Domain of unknown function (DUF5094)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   3.7      0.11   1.1e+02       4      75 ..      44      80 ..       5      97 .. 0.52
   2 ?   10.1   0.1   0.00063      0.66     148     177 ..     150     179 ..     140     180 .. 0.90

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.11
     DUF5094  4 ltlrtpkkstkkvskkknklssknlkekenvkvkeaeekkeekvtstkenkenekqdkdsllkeikdienel 75
                ++++  kk++k+++++ +  +++n k+k                                   e+ ++ ++l
  CCD26589.1 44 QEVQSLKKQVKTLNEQLDGSKTSNEKQK-----------------------------------ETLEVIKDL 80
                2233334444444444444444444444...................................333333333 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00063
     DUF5094 148 dlpeyLseeisFekeqlkkFfykvmqivie 177
                 +lp y+ +++sF+ ++l++F+ k+ +++ +
  CCD26589.1 150 QLPSYMFDTLSFPLKSLNQFYTKMAKCLNK 179
                 69*******************999999865 PP

>> Sec2p  GDP/GTP exchange factor Sec2p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.4   9.7e-05       0.1      35      85 ..      36      86 ..      29      93 .. 0.92
   2 ?   -2.4   0.0       4.6   4.8e+03      66      83 ..     156     173 ..     138     180 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 9.7e-05
                HHHHHHHHHHHHHHHHHHHHHHHHHTTHCHCCCHCTSSSSHHHHCTTTXXX CS
       Sec2p 35 NkmVaaarkekealekkneklkeqLkeketlleslqeqLkeLkevlekmee 85
                N+ V + ++e ++l+k+ + l+eqL+ ++t  e+++e L+  k+++e++ e
  CCD26589.1 36 NTAVDTHKQEVQSLKKQVKTLNEQLDGSKTSNEKQKETLEVIKDLFEHLCE 86
                89999*****************************************99866 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 4.6
                 CCHCTSSSSHHHHCTTTX CS
       Sec2p  66 leslqeqLkeLkevlekm 83 
                 +++l+  Lk+L +   km
  CCD26589.1 156 FDTLSFPLKSLNQFYTKM 173
                 344444555555555555 PP

>> SlyX  SlyX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   2.3   0.00017      0.18      21      57 ..      34      70 ..      14      77 .. 0.79
   2 ?   -2.4   0.1       7.2   7.5e+03      36      47 ..     140     151 ..     137     155 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 0.00017
                HHHHHHHHHHHHHHHHHHHHHHHHHT-XXXXXXXXXX CS
        SlyX 21 eLndvvaeqqqqidrlqrqlrllaerlkeleessgas 57
                 Ln +v  + q+++ l++q++ l+e+l   ++s++++
  CCD26589.1 34 LLNTAVDTHKQEVQSLKKQVKTLNEQLDGSKTSNEKQ 70
                5999***********************8888877644 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 7.2
                 HHHHHHHHHHT- CS
        SlyX  36 lqrqlrllaerl 47 
                   ++lr l+++l
  CCD26589.1 140 TVEELRILQDQL 151
                 345555555555 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.8    0.0029       3.1      16      65 ..      35      81 ..      12      89 .. 0.83
   2 ?    0.3   0.0      0.93   9.8e+02      30      67 ..     147     179 ..     137     182 .] 0.71

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0029
     NPV_P10 16 vddkVdalqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqdiL 65
                +++ Vd  +q+v+++++++++   lne+Ld+  ++ ++ ++++e I+d+ 
  CCD26589.1 35 LNTAVDTHKQEVQSLKKQVKT---LNEQLDGSKTSNEKQKETLEVIKDLF 81
                566677777777777777666...99999999999999999999998865 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.93
     NPV_P10  30 vqenlpdvtelnekLdaqsaqLaeletkvenIqdiLnp 67 
                 +q++lp        +d +s  L++l++  ++  + Ln+
  CCD26589.1 147 LQDQLPS-----YMFDTLSFPLKSLNQFYTKMAKCLNK 179
                 4455555.....44888999999999988888888884 PP

>> FlaC_arch  Flagella accessory protein C (FlaC)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.2     0.023        24       5      40 ..      14      49 ..      12      49 .. 0.92
   2 ?    6.8   5.1    0.0083       8.7      12      37 ..      35      60 ..      25      87 .. 0.72

  Alignments for each domain:
  == domain 1  score: 5.4 bits;  conditional E-value: 0.023
   FlaC_arch  5 lEnklsklsteletvkkeneelsksveelkenVkdl 40
                ++++l+  ++ ++ +  en+ l++ v++ k++V+ l
  CCD26589.1 14 IQERLDAADVLVSKLTLENSLLNTAVDTHKQEVQSL 49
                78999999*************************976 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0083
   FlaC_arch 12 lsteletvkkeneelsksveelkenV 37
                l t ++t k+e ++l+k+v++l+e+ 
  CCD26589.1 35 LNTAVDTHKQEVQSLKKQVKTLNEQL 60
                55677777777777777777777754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2200  (0.122706); expected 358.6 (0.02)
Passed bias filter:                     1080  (0.0602376); expected 358.6 (0.02)
Passed Vit filter:                       197  (0.0109878); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.55u 0.26s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 1297.05
//
Query:       CCD26590.1  [L=141]
Description: hypothetical protein NDAI_0I00210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-14   53.6   7.7    2.9e-14   52.7   7.7    1.5  1  zf-LYAR      LYAR-type C2HC zinc finger
  ------ inclusion threshold ------
      0.024   14.0   5.9      0.028   13.7   5.9    1.1  1  PPL5         Prim-pol family 5
      0.027   14.8   4.4       0.23   11.8   0.6    3.0  2  zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
       0.05   13.6   3.1          2    8.5   0.1    2.3  2  XPA_N        XPA protein N-terminal
      0.087   12.4   1.6         11    5.8   0.1    2.6  2  zf_UBZ       Ubiquitin-Binding Zinc Finger
      0.095   13.6   5.2        1.1   10.3   0.2    2.7  2  zf-C2H2_4    C2H2-type zinc finger
        1.7    7.6  11.1        1.8    7.5  11.1    1.1  1  SLC12        Solute carrier family 12
        3.2    8.4   5.9        1.9    9.1   1.1    2.6  2  zf-C2H2      Zinc finger, C2H2 type
          6    7.5   9.2         21    5.7   3.9    3.2  2  zf-H2C2_2    Zinc-finger double domain
        6.3    5.3   6.4        7.6    5.1   6.4    1.0  1  Ndc1_Nup     Nucleoporin protein Ndc1-Nup
        9.5    4.9   9.3         11    4.7   9.3    1.1  1  Presenilin   Presenilin


Domain annotation for each model (and alignments):
>> zf-LYAR  LYAR-type C2HC zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   7.7   1.8e-17   2.9e-14       1      28 []      30      58 ..      30      58 .. 0.99

  Alignments for each domain:
  == domain 1  score: 52.7 bits;  conditional E-value: 1.8e-17
     zf-LYAR  1 fsCiDCsktFdg.deykaHtsCItEaeKY 28
                ++CiDCsktFd+  +yk+Ht+CI+E+eKY
  CCD26590.1 30 YTCIDCSKTFDDgVSYKQHTQCISEDEKY 58
                8**********99**************** PP

>> PPL5  Prim-pol family 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.7   5.9   1.7e-05     0.028     159     235 ..      40     118 ..      27     139 .. 0.66

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 1.7e-05
        PPL5 159 kdkvsyhvharsltyleerlaaeakgveeveeksskkkskek..kkklkkktsrkkkkegkkekesekeeededeeddl 235
                  d vsy  h++ ++  e++++a  kg ++ +++++++k++    +++ +  t++kk++++k+ ++s+k+++++++++ +
  CCD26590.1  40 DDGVSYKQHTQCISEDEKYQKALYKGKKNQKNQNQNQKKDIPtpDATPDVDTKSKKERNKKDTNSSNKDDSKSKNKNKV 118
                 689***************9999988888866665555554430034444445555555555556666666666666554 PP

>> zf-C2H2_jaz  Zinc-finger double-stranded RNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.2     0.062     1e+02       2       8 ..       4      10 ..       3      12 .. 0.92
   2 ?   11.8   0.6   0.00014      0.23       2      20 ..      30      48 ..      29      50 .. 0.92

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.062
                 CBBTTTT CS
  zf-C2H2_jaz  2 fYCvlCd 8 
                 f C++C+
   CCD26590.1  4 FNCEVCN 10
                 99****8 PP

  == domain 2  score: 11.8 bits;  conditional E-value: 0.00014
                 CBBTTTTBBBSSHHHHHCC CS
  zf-C2H2_jaz  2 fYCvlCdKyFksenaldnH 20
                 + C+ C+K+F +  ++++H
   CCD26590.1 30 YTCIDCSKTFDDGVSYKQH 48
                 78***************** PP

>> XPA_N  XPA protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.9     0.014        23      19      26 ..       3      10 ..       1      11 [. 0.85
   2 ?    8.5   0.1    0.0012         2       3      13 ..      31      41 ..      29      45 .. 0.90

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.014
       XPA_N 19 nFdysVCD 26
                +F+++VC+
  CCD26590.1  3 TFNCEVCN 10
                8******7 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.0012
       XPA_N  3 kCdeCgkefld 13
                +C +C+k+f+d
  CCD26590.1 31 TCIDCSKTFDD 41
                8********98 PP

>> zf_UBZ  Ubiquitin-Binding Zinc Finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.2    0.0076        12       2      15 ..       3      16 ..       2      21 .. 0.83
   2 ?    5.8   0.1    0.0065        11       2      15 ..      29      42 ..      28      49 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0076
      zf_UBZ  2 tylCerCgkeipes 15
                t+ Ce C+ ++p  
  CCD26590.1  3 TFNCEVCNDTVPKK 16
                899********975 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.0065
      zf_UBZ  2 tylCerCgkeipes 15
                +y+C +C k++ + 
  CCD26590.1 29 YYTCIDCSKTFDDG 42
                69********9875 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.9     0.037        61       1      20 [.       4      22 ..       4      26 .. 0.83
   2 ?   10.3   0.2   0.00069       1.1       1      19 [.      30      48 ..      30      50 .. 0.93

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.037
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHl 20
                f C++C+ + + k++  +H 
  CCD26590.1  4 FNCEVCNDTVPKKNT-EKHY 22
                89*****99998888.7775 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.00069
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrH 19
                ++C  C+k+F +  ++++H
  CCD26590.1 30 YTCIDCSKTFDDGVSYKQH 48
                89**********9999999 PP

>> SLC12  Solute carrier family 12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  11.1    0.0011       1.8     149     239 ..      50     140 ..      16     141 .] 0.47

  Alignments for each domain:
  == domain 1  score: 7.5 bits;  conditional E-value: 0.0011
       SLC12 149 e..keeeekkkakkkklleekskekeekekleekdsnlslseekkeeekekkkekkkkkekkeklkkkekslllkeaskee.kevleeitqfqk 239
                 +  +e+e+ +ka  k ++++k++++++k+++ + d + ++++++k   ke++k+++++++k+++++k+++++++ +++ e+ k++ + ++ fqk
  CCD26590.1  50 QciSEDEKYQKALYKGKKNQKNQNQNQKKDIPTPDATPDVDTKSK---KERNKKDTNSSNKDDSKSKNKNKVTKPSPKLESgKSLYKILKIFQK 140
                 122223333333344444455555555556666666666665555...2222222222333333333333333333333334666666677765 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.3      0.43     7e+02       1       7 [.       4      10 ..       4      22 .. 0.80
   2 ?    9.1   1.1    0.0012       1.9       1      20 [.      30      49 ..      23      50 .. 0.76

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.43
                EEETTTT CS
     zf-C2H2  1 ykCpdCg 7 
                + C++C+
  CCD26590.1  4 FNCEVCN 10
                78****8 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0012
                EEETTTTEEESSHHHHHHHH CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHi 20
                y+C dC+k+F +  ++k+H 
  CCD26590.1 30 YTCIDCSKTFDDGVSYKQHT 49
                4555********99999996 PP

>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.085   1.4e+02      15      23 ..       4      12 ..       3      15 .. 0.89
   2 ?    5.7   3.9     0.013        21      14      24 ..      29      39 ..      12      41 .. 0.80

  Alignments for each domain:
  == domain 1  score: 3.2 bits;  conditional E-value: 0.085
   zf-H2C2_2 15 yeCplCdka 23
                ++C++C+++
  CCD26590.1  4 FNCEVCNDT 12
                89****986 PP

  == domain 2  score: 5.7 bits;  conditional E-value: 0.013
   zf-H2C2_2 14 pyeCplCdkaF 24
                 y+C  C+k+F
  CCD26590.1 29 YYTCIDCSKTF 39
                49********9 PP

>> Ndc1_Nup  Nucleoporin protein Ndc1-Nup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   6.4    0.0046       7.6     335     421 ..      28     122 ..      24     137 .. 0.45

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.0046
    Ndc1_Nup 335 ilkeClklikeltqrinergq.papkaaps.........kapknkasapvkelprlsksplkkkddeifgn........sltaeaspkssssskegvek 415
                  +  C++  k + + ++++++ +  +   +         k +kn++++++++++++++++   + d   ++        s+++++s++       + ++
  CCD26590.1  28 AYYTCIDCSKTFDDGVSYKQHtQCIS---EdekyqkalyKGKKNQKNQNQNQKKDIPTPDATPDVDTKSKKernkkdtnSSNKDDSKS-------KNKN 116
                 56677777777777777777732222...12335556775556666666666666663333332112112222212111222222222.......2222 PP

    Ndc1_Nup 416 alssla 421
                 ++++++
  CCD26590.1 117 KVTKPS 122
                 222222 PP

>> Presenilin  Presenilin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   9.3    0.0067        11     238     295 ..      57     114 ..      31     133 .. 0.32

  Alignments for each domain:
  == domain 1  score: 4.7 bits;  conditional E-value: 0.0067
  Presenilin 238 eeeaekkkeeasesskeeeseeesseksaqsseseeeseeesseaessaeesseekes 295
                 + ++   k ++++++++++++++ ++  a+ + ++++++e+++++++s+++ ++++++
  CCD26590.1  57 KYQKALYKGKKNQKNQNQNQKKDIPTPDATPDVDTKSKKERNKKDTNSSNKDDSKSKN 114
                 1111111112222222222222111111111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2639  (0.147192); expected 358.6 (0.02)
Passed bias filter:                      557  (0.031067); expected 358.6 (0.02)
Passed Vit filter:                       108  (0.00602376); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 1040.01
//
Query:       CCD26591.1  [L=615]
Description: hypothetical protein NDAI_0I00220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-21   76.9   0.0    2.5e-21   75.7   0.0    1.7  1  Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
    3.9e-15   55.2   1.0    9.9e-15   53.9   1.0    1.8  1  SH3_1        SH3 domain
    1.2e-12   47.4   0.3    2.8e-12   46.3   0.3    1.7  1  SH3_9        Variant SH3 domain
    1.2e-05   24.8   0.0    2.9e-05   23.6   0.0    1.6  1  SH3_2        Variant SH3 domain


Domain annotation for each model (and alignments):
>> Cofilin_ADF  Cofilin/tropomyosin-type actin-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   0.0   5.5e-25   2.5e-21       3     121 .]      17     134 ..      15     134 .. 0.90

  Alignments for each domain:
  == domain 1  score: 75.7 bits;  conditional E-value: 5.5e-25
                  HHHHHHCTTT...SSEEEEEEECTTTEEEEEESS-HHHHHHHHHHTTT-EEEEEEEEEECCSECCEEEEEEEEE--TTS-HHHHHHHHHHHHHHHH.H CS
  Cofilin_ADF   3 eafkelksgk..ktkyilfkidddkeeivveeegetyeelreelpeseprYavydveyehddeskrsklvfIswvPdsapikqkmlyasskdalkk.e 97 
                  +++ ++ +g+   t++++++ + + +e +++++g++++e++++++e+++ +++ +v+   + +s+ +kl++I w+Pdsap+kq++ +as+ +++ +  
   CCD26591.1  17 QEYLKVVRGEdsATSWLIISPNAK-KEYEPSQTGSDFSEFLQSFDETKVEFGLARVS---PPGSDVEKLILIGWCPDSAPMKQRASFASNFATVANnV 110
                  56666666666899******9965.6*****************************99...55689******************************846 PP

                  CTTSEEEEEE-CGGCCSHHHHHHH CS
  Cofilin_ADF  98 lkgisveieatdldelteeelkek 121
                  l g++v++ a+d d+l+e+el++k
   CCD26591.1 111 LGGYHVQVTARDVDDLDENELLSK 134
                  69******************9976 PP

>> SH3_1  SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   1.0   2.2e-18   9.9e-15       2      48 .]     562     608 ..     561     608 .. 0.98

  Alignments for each domain:
  == domain 1  score: 53.9 bits;  conditional E-value: 2.2e-18
                 ESSSBEXSSTTBXEBSTTEEEEEEEECSSSEEEEEETTSTEEEEEEG CS
       SH3_1   2 AlYDYeaeesdELsfkkGDviivleksedgWwkgrlkgtgkeGliPs 48 
                 A YDY+a e++EL+f ++D+ii++e ++d+Ww g+l  +g++Gl+Ps
  CCD26591.1 562 AEYDYDAGEENELTFVENDKIINIEFVDDDWWLGELEKNGEKGLFPS 608
                 99********************************************8 PP

>> SH3_9  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.3   6.2e-16   2.8e-12       1      48 [.     562     611 ..     562     612 .. 0.96

  Alignments for each domain:
  == domain 1  score: 46.3 bits;  conditional E-value: 6.2e-16
       SH3_9   1 AlypyepreddeLsLqrGDvitvieesedgWlegsl..tGrtGlvPanyv 48 
                 A y+y++ e+ eL + ++D i++ie  +d+W++g+l  +G++Gl+P+nyv
  CCD26591.1 562 AEYDYDAGEENELTFVENDKIINIEFVDDDWWLGELekNGEKGLFPSNYV 611
                 78*********************************778***********9 PP

>> SH3_2  Variant SH3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   6.6e-09   2.9e-05       6      55 ..     564     612 ..     559     613 .. 0.86

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 6.6e-09
                 S-B-SCGCCB--B-TTEEEEEE..EEEECTTEEEEEE..CCCEEEEEGCGEE CS
       SH3_2   6 edyvgedkseLsfkkGdvikvlslgskdsdgwwegev..gGrvGlfPsslve 55 
                  dy++  ++eL+f ++d i  +   +  +d+ww+ge   +G +GlfPs++v+
  CCD26591.1 564 YDYDAGEENELTFVENDKIINI---EFVDDDWWLGELekNGEKGLFPSNYVS 612
                 5899999999*******66666...67889*****99999**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1684  (0.093926); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        66  (0.00368119); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.88u 0.34s 00:00:01.22 Elapsed: 00:00:00.48
# Mc/sec: 3818.38
//
Query:       CCD26592.1  [L=1680]
Description: hypothetical protein NDAI_0I00230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-10   41.7  69.3    1.9e-06   28.3  12.6   26.1 20  Flocculin_t3  Flocculin type 3 repeat


Domain annotation for each model (and alignments):
>> Flocculin_t3  Flocculin type 3 repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.6  18.2         1   1.8e+04      15      40 ..     176     202 ..     161     214 .. 0.85
   2 ?   -4.4   1.8         1   1.8e+04       5      33 ..     283     300 ..     277     305 .. 0.40
   3 ?   -4.0   2.4         1   1.8e+04       8      41 ..     400     429 ..     396     438 .. 0.42
   4 ?   -1.9   0.4      0.28     5e+03      24      38 ..     462     473 ..     445     488 .. 0.63
   5 ?   -3.7  15.2         1   1.8e+04      12      37 ..     493     517 ..     467     519 .. 0.87
   6 !   23.4   6.8   3.5e-09   6.3e-05      24      44 .]     522     542 ..     518     542 .. 0.95
   7 ?   -2.9   0.1      0.59   1.1e+04       9      26 ..     554     572 ..     548     577 .. 0.73
   8 !   28.3  12.6   1.1e-10   1.9e-06      15      43 ..     620     648 ..     606     649 .. 0.82
   9 ?  -12.4  13.6         1   1.8e+04      25      35 ..     671     681 ..     652     718 .. 0.65
  10 ?   -5.0   1.4         1   1.8e+04      20      29 ..     747     756 ..     740     759 .. 0.53
  11 !   21.4  12.7   1.5e-08   0.00026       6      44 .]     797     850 ..     793     850 .. 0.89
  12 ?   -2.8  16.2      0.54   9.7e+03       1      33 [.     864     896 ..     864     921 .. 0.79
  13 ?    1.1   4.8     0.033   5.9e+02       9      35 ..     926     951 ..     924     954 .. 0.82
  14 ?   -4.5   2.0         1   1.8e+04       5      23 ..     985    1017 ..     983    1028 .. 0.47
  15 !   16.1  13.3   6.6e-07     0.012      11      43 ..    1075    1109 ..    1054    1110 .. 0.67
  16 ?  -76.0  97.0         1   1.8e+04       1      40 [.    1117    1156 ..    1111    1261 .. 0.89
  17 !   10.2  26.1   4.6e-05      0.83      23      43 ..    1309    1355 ..    1277    1356 .. 0.70
  18 ?  -23.6  27.5         1   1.8e+04       7      29 ..    1421    1443 ..    1358    1457 .. 0.68
  19 ?  -38.3  45.2         1   1.8e+04       2      17 ..    1508    1524 ..    1442    1574 .. 0.71
  20 ?  -13.4  18.6         1   1.8e+04       4      38 ..    1585    1621 ..    1582    1661 .. 0.72

  Alignments for each domain:
  == domain 1  score: -5.6 bits;  conditional E-value: 1
  Flocculin_t3  15 settvttgvstvTttv.ngvvTvYTTy 40 
                   ++t +t+ ++t T +  ng vT++TTy
    CCD26592.1 176 VTTITTALPTTFTSSLeNGDVTTVTTY 202
                   5667888889999999999*******9 PP

  == domain 2  score: -4.4 bits;  conditional E-value: 1
  Flocculin_t3   5 TiTsCsdnkCse.ttvttgvstvTttvngv 33 
                   T+ s s++  s+ t++ +           +
    CCD26592.1 283 TTQSISPS-ISTlTSSKQ-----------T 300
                   44333333.333222222...........2 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 1
  Flocculin_t3   8 sCsdnkCsettvttgv.......stvTttvngvvTvYTTyC 41 
                   s+s++  s t ++ ++       st++ tv           
    CCD26592.1 400 STSND-TSSTIIPNTIieqpsvsSTIRMTV----------T 429
                   55555.344422222224433333333333..........2 PP

  == domain 4  score: -1.9 bits;  conditional E-value: 0.28
  Flocculin_t3  24 stvTttvngvvTvYT 38 
                   st+ +t+   +TvY 
    CCD26592.1 462 STYKETS---TTVYS 473
                   3333333...44443 PP

  == domain 5  score: -3.7 bits;  conditional E-value: 1
  Flocculin_t3  12 nkCsettvttgvstvTttvngvvTvY 37 
                   n  s++tvt  ++t+Ttt+++++  Y
    CCD26592.1 493 N-LSTSTVTPELTTITTTTDSITSSY 517
                   4.7889***************99998 PP

  == domain 6  score: 23.4 bits;  conditional E-value: 3.5e-09
  Flocculin_t3  24 stvTttvngvvTvYTTyCPlT 44 
                   stvTt +n++ T+YTT+CPlT
    CCD26592.1 522 STVTTVINDIITIYTTWCPLT 542
                   8*******************9 PP

  == domain 7  score: -2.9 bits;  conditional E-value: 0.59
  Flocculin_t3   9 Cs.dnkCsettvttgvstv 26 
                    s ++k s++t+++ +s +
    CCD26592.1 554 SSmKEKISTSTIPALLSSI 572
                   3466778999999999876 PP

  == domain 8  score: 28.3 bits;  conditional E-value: 1.1e-10
  Flocculin_t3  15 settvttgvstvTttvngvvTvYTTyCPl 43 
                   + t+  + +stvTttv+gvvT+YTT+CPl
    CCD26592.1 620 TNTSYIAKLSTVTTTVKGVVTEYTTWCPL 648
                   457888999*******************8 PP

  == domain 9  score: -12.4 bits;  conditional E-value: 1
  Flocculin_t3  25 tvTttvngvvT 35 
                   t+T t+++ +T
    CCD26592.1 671 TTTDTISDNTT 681
                   33333333333 PP

  == domain 10  score: -5.0 bits;  conditional E-value: 1
  Flocculin_t3  20 ttgvstvTtt 29 
                    t+  t+T t
    CCD26592.1 747 RTIFKTTTLT 756
                   4455555555 PP

  == domain 11  score: 21.4 bits;  conditional E-value: 1.5e-08
  Flocculin_t3   6 iTsCsdnkCsettvttgv................stvTttvngvvTvYTTyCPlT 44 
                   iT +s+    +t+ +t+v                s++Tttv+gvvT+ +T+CPlT
    CCD26592.1 797 ITATSPI-VNTTVRPTTVvnelgfstvefrtvvrSICTTTVHGVVTEFVTWCPLT 850
                   8888888.78886666666***********************************9 PP

  == domain 12  score: -2.8 bits;  conditional E-value: 0.54
  Flocculin_t3   1 TtviTiTsCsdnkCsettvttgvstvTttvngv 33 
                   T +iT+  Cs++ Cs+tt+ t+ +++  t +++
    CCD26592.1 864 TVTITTEVCSNHMCSKTTIITTETIIPSTASST 896
                   77899999**999***98888887777665443 PP

  == domain 13  score: 1.1 bits;  conditional E-value: 0.033
  Flocculin_t3   9 Cs.dnkCsettvttgvstvTttvngvvT 35 
                   Cs ++ C+  ++t  +st T t+n  v 
    CCD26592.1 926 CSgEH-CTN-PSTELLSTFTSTTNILVS 951
                   99677.998.************986555 PP

  == domain 14  score: -4.5 bits;  conditional E-value: 1
  Flocculin_t3    5 TiTsCs.dnk.............Csettvttgv 23  
                    T Ts+s +++              + +++ tg+
    CCD26592.1  985 TSTSTSiSSSnlqnsesifthqsTHRSASGTGP 1017
                    566666533334444555544334444444444 PP

  == domain 15  score: 16.1 bits;  conditional E-value: 6.6e-07
  Flocculin_t3   11 dnkCsettvttgv............stvTttvngvvTvYTTyCPl 43  
                    ++                       stvTt  +gv+T YTT+CP 
    CCD26592.1 1075 NG----------KtsqtsysswfslSTVTTVKSGVTTMYTTWCPR 1109
                    33..........2444444455566*******************5 PP

  == domain 16  score: -76.0 bits;  conditional E-value: 1
  Flocculin_t3    1 TtviTiTsCsdnkCsettvttgvstvTttvngvvTvYTTy 40  
                    Tt  T Ts + +  s+t++t +vst+ tt++ +  + TT+
    CCD26592.1 1117 TTSTTSTSSTTGTTSTTSTTSTVSTTSTTSTTTHSISTTV 1156
                    5555666666554666677777777777776666666665 PP

  == domain 17  score: 10.2 bits;  conditional E-value: 4.6e-05
  Flocculin_t3   23 v..........................stvTttvngvvTvYTTyCPl 43  
                    v                          stvTt  +g++T+YTT+CP 
    CCD26592.1 1309 VkpcsdsqcsskvetssastssaiftiSTVTTVRSGITTIYTTWCPR 1355
                    255555555555555555667899999*******************5 PP

  == domain 18  score: -23.6 bits;  conditional E-value: 1
  Flocculin_t3    7 TsCs.dnkCsettvttgvstvTtt 29  
                    T Cs +n C  +++ t  + + tt
    CCD26592.1 1421 TICSgSN-CPVSSIRTHTTPTSTT 1443
                    3466444.5443333333333333 PP

  == domain 19  score: -38.3 bits;  conditional E-value: 1
  Flocculin_t3    2 tviTiTsCs.dnkCse.t 17  
                    t+  iT C+ ++ C+e t
    CCD26592.1 1508 TTSSITFCTgND-CTEsT 1524
                    445577777444.77742 PP

  == domain 20  score: -13.4 bits;  conditional E-value: 1
  Flocculin_t3    4 iTiTsCsdnk...Cset.tvttgvstvTttvngvvTvYT 38  
                    +TiTs s++     ++  ++t ++ + T ++  ++ +YT
    CCD26592.1 1585 VTITSSSSSVlnsITTIlVSTEVPIISTPDI--TTIIYT 1621
                    8999999654222555544555555555554..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1680 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1665  (0.0928663); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.22u 0.27s 00:00:01.49 Elapsed: 00:00:00.47
# Mc/sec: 10683.70
//
Query:       CCD26593.1  [L=194]
Description: hypothetical protein NDAI_0I00240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-43  148.2   3.2    5.2e-43  146.6   3.2    1.7  1  DUF866    Eukaryotic protein of unknown function (DUF866)


Domain annotation for each model (and alignments):
>> DUF866  Eukaryotic protein of unknown function (DUF866)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   3.2   2.9e-47   5.2e-43       2     154 ..       4     191 ..       3     192 .. 0.78

  Alignments for each domain:
  == domain 1  score: 146.6 bits;  conditional E-value: 2.9e-47
                 EEEEEEE.ESEEEEE--T..........T--EEEEEEETTSS.-EEEEEEE-TT-BEE-TTSS-EESEEE--SSSS--EEEEEE-.-TTTT........ CS
      DUF866   2 Lqikael.envtslepad.ee......edfeytfkvkctsCreehpkevsisreekveisgsrgeanfvvkcklckressisikketeksy........ 84 
                 L ik +l env +l ++d +e      +++ey f++ ctsCre h ++v i+  ek+e++gs+gea+f++kck+c+++ s+++ k  ek +        
  CCD26593.1   4 LIIKGTLsENVRRLYVKDhDEkdaqstKPAEYAFDLVCTSCREAHGSPVLINLVEKHEMPGSKGEASFIMKCKFCSKDISVNLLKF-EKYLynpdsgve 101
                 6688888899999999987541222224789*********************************************9999999995.333345555555 PP

                 ..................EEEGGTS-EEEEEEEEESEEEEEE---S-.EEEEETTS-EEEEE--T..S.-EEEEETTTTEEEEEEEEEEEE CS
      DUF866  85 ..................taedsgkfktilefdcrGlelvefkpegg.wkvesasgtkfedvdLs..egeWydYdekageeVsitelevei 154
                                   ++ ++++ + il++dcrG+el++f+p++  +++e +sg++ +d++++  e+eWydYde+ageeVs++ +++ei
  CCD26593.1 102 edeleeksikltrkkhglKSLKENNNAAILQLDCRGCELTKFYPSSVmFQAELTSGNV-MDCQFEngEDEWYDYDEDAGEEVSVSSFQSEI 191
                 554455444544444443333334455******************955****988876.56****64479******************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       717  (0.0399911); expected 358.6 (0.02)
Passed bias filter:                      465  (0.0259356); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.25s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 1476.47
//
Query:       CCD26594.1  [L=897]
Description: hypothetical protein NDAI_0I00250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-77  260.6   0.6    2.9e-77  259.6   0.6    1.5  1  Pkinase         Protein kinase domain
    2.9e-32  112.0   0.1    2.2e-21   76.3   0.2    2.4  2  Pkinase_Tyr     Protein tyrosine kinase
    2.1e-09   37.1   3.4    1.2e-06   28.1   0.1    3.7  3  Kinase-like     Kinase-like
  ------ inclusion threshold ------
      0.032   14.9   0.9       0.12   13.0   0.1    2.3  2  Yeast-kill-tox  Yeast killer toxin


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.6   0.6   6.4e-81   2.9e-77       1     264 []     492     781 ..     492     781 .. 0.97

  Alignments for each domain:
  == domain 1  score: 259.6 bits;  conditional E-value: 6.4e-81
                 EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH.HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHH..HHSS-- CS
     Pkinase   1 yekleklGeGsfGkVykaveketgkivAvKkikkekakkkke.kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladlle..rkgsls 96 
                 ++k++ lG+G++GkVy ++ek+t+  +A+K+ +k+++ k+k+ k+v++E +il++++hp+iv+ly++f+++d+lyl++ey++gge++++l+  ++++++
  CCD26594.1 492 FQKIKLLGQGDVGKVYLVKEKSTNALYAMKIYNKNDMLKRKKiKRVITEQEILATSNHPFIVTLYHSFQSEDYLYLCMEYCMGGEFFRALQtrESKCID 590
                 67899*********************************99999************************************************866677** PP

                 HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS..............................BCTTTSCGGGS- CS
     Pkinase  97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk..............................ltsfvgtseYlA 165
                 e+ a+++a++++++leylH  g+i+rDlKpeNiL++++g+++++DF+l+ +++ s++                              ++sfvgt+eY+A
  CCD26594.1 591 EDAAQFYASEVIAALEYLHLLGFIYRDLKPENILLHKSGHIMLSDFDLSIQAKDSKNptfmkngilstnnsnsnliidtkicsdgfrTNSFVGTEEYIA 689
                 ******************************************************999****************************************** PP

                 HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT....HHHHHT CS
     Pkinase 166 PEvlkeneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt....aeellq 260
                 PEv+++n+++ +vD+W+lG+++ye+l+gk+pf+g++++e+++++l +           ++++p+ ++is+++k+l+kkll k+++kRl+    a+++++
  CCD26594.1 690 PEVIRGNGHTVAVDWWTLGILIYEMLFGKTPFKGKNTNETFANILSH-----------DFTFPNTNNISRNCKNLIKKLLIKNETKRLGskmgAADIKK 777
                 *********************************99999988888888...........99****************************99999999999 PP

                 SGGG CS
     Pkinase 261 hpyl 264
                 h+++
  CCD26594.1 778 HDFF 781
                 9998 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.2     5e-25   2.2e-21       3     159 ..     494     648 ..     492     661 .. 0.88
   2 !   32.9   0.0   8.8e-12     4e-08     170     249 ..     686     765 ..     673     770 .. 0.92

  Alignments for each domain:
  == domain 1  score: 76.3 bits;  conditional E-value: 5e-25
                  EEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTS..SHHHHHHHHHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   3 lgkklGeGafGkVvegtlkgekekkevkVavKtlkeea..teeekeelleeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkeke 98 
                    k lG+G  GkV+  + k    +++   a+K+ +++   ++++ +++++e +i+ + +hp iv l+    +e+ l++ +ey+ gG++   L+++e++
   CCD26594.1 494 KIKLLGQGDVGKVYLVKEK----STNALYAMKIYNKNDmlKRKKIKRVITEQEILATSNHPFIVTLYHSFQSEDYLYLCMEYCMGGEFFRALQTRESK 587
                  5789**********99988....788888999996554115666899************************************************999 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey 159
                   ++ +    +a +v +++eyL+   ++ rdl   N+Ll+++ ++ +sDf L+ + +++++ 
   CCD26594.1 588 CIDEDAAQFYASEVIAALEYLHLLGFIYRDLKPENILLHKSGHIMLSDFDLSIQAKDSKNP 648
                  9999999999******************************************999665554 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 8.8e-12
                  GGS-HHHHHHSEEEHHHHHHHHHHHHHHHHTTSSGTTTTS.HHHHHHHHHHTTEES-BBTTSBHHHHHHHHHHT-SSGGGS CS
  Pkinase_Tyr 170 kWmapEslkekkftsksDvWsfGvllwEiftlgespypgl.kneevleklkegkrlekpekcpeelyelmkkcweedpeeR 249
                  +++apE+++ +  t++ D W  G+l++E++  g++p++g  +ne++++ l+++   ++ ++++++ ++l+kk + ++ ++R
   CCD26594.1 686 EYIAPEVIRGNGHTVAVDWWTLGILIYEMLF-GKTPFKGKnTNETFANILSHDFTFPNTNNISRNCKNLIKKLLIKNETKR 765
                  799**************************98.********7778888888**********************999999988 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.26   1.2e+03     169     226 ..     280     343 ..     278     352 .. 0.82
   2 !    5.6   0.2    0.0019       8.5      11      60 ..     489     538 ..     484     550 .. 0.84
   3 !   28.1   0.1   2.7e-10   1.2e-06     142     288 .]     591     765 ..     560     765 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.26
  Kinase-like 169 kftvdnllldekgglmlggftaLvragtkvvlseve......kgfaPpEllgsrggytrknktk 226
                   +t++n++ + +  + l gf++  ++  +  l e++      + f+  E+l+ ++++ + n+ +
   CCD26594.1 280 AMTPTNTISNINNNFTLNGFQKFHKDLSNISLDEIKeneestQFFQSHETLATAQTFSNTNNIT 343
                  5788999999999999999999999999999988877778888899999999999988877765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0019
  Kinase-like  11 ertlvrgellkkgdrsvvfevkdqetgeplavkvfllpseaskkdlerlk 60 
                  ++ + + +ll++gd ++v++vk++ t+   a+k+   ++   +k+++r+ 
   CCD26594.1 489 PQSFQKIKLLGQGDVGKVYLVKEKSTNALYAMKIYNKNDMLKRKKIKRVI 538
                  67788999************************999999999999999864 PP

  == domain 3  score: 28.1 bits;  conditional E-value: 2.7e-10
  Kinase-like 142 etiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggftaLvragtkvvlseve.....................kgfaPpEllgsrgg 218
                  e++a+ +   ++i    +L+ +g +  +++++n+ll++ g +ml +f+  ++a+++     ++                      gf    ++g    
   CCD26594.1 591 EDAAQFY-ASEVIAALEYLHLLGFIYRDLKPENILLHKSGHIMLSDFDLSIQAKDSKNPTFMKngilstnnsnsnliidtkicsDGFRTNSFVGTEEY 687
                  3444444.47899999********************************998888765422222457777779************9*********9766 PP

  Kinase-like 219 ..ytrknktkmthkldaWqlGlviyriwclklPltlat.ee.....akeewkfklckkipekvkaLlkkfLqlsqedR 288
                     +  +    t ++d W+lG+ iy +   k P+  +  +e      + ++ f   ++i+ + k L+kk+L  ++ +R
   CCD26594.1 688 iaPEVIRGNGHTVAVDWWTLGILIYEMLFGKTPFKGKNtNEtfaniLSHDFTFPNTNNISRNCKNLIKKLLIKNETKR 765
                  33334477789**********************976531331111145677********************9998887 PP

>> Yeast-kill-tox  Yeast killer toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   2.7e-05      0.12       8      84 ..     222     300 ..     218     303 .. 0.79
   2 ?   -1.4   0.1      0.85   3.8e+03      61      80 ..     337     356 ..     329     359 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 2.7e-05
  Yeast-kill-tox   8 kncdpnsgscdwkqnwntcvgiganvhwmvtgestdgkqgcai..iwegsgcvgrsttmccpadtccnintgfyirsyr 84 
                     +n + ns   d+++n n+ + i  n+      +s    q  +       s     s     p++t  nin  f +  ++
      CCD26594.1 222 NNSNNNSNKHDFNKNLNSFLQIDPNIVLSAQSQSQSQSQSQSHshTTSQSSSSLSSIKAMTPTNTISNINNNFTLNGFQ 300
                     57889999******************99998888666555554004445555667778889************988776 PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.85
  Yeast-kill-tox  61 sttmccpadtccnintgfyi 80 
                     s t    +d   nint +y+
      CCD26594.1 337 SNTNNITNDNSININTSIYL 356
                     566677889999*****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1790  (0.0998383); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.31s 00:00:01.05 Elapsed: 00:00:00.46
# Mc/sec: 5810.62
//
Query:       CCD26595.1  [L=1056]
Description: hypothetical protein NDAI_0I00260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-63  212.4   0.0    3.8e-62  209.7   0.0    2.3  2  MutS_V       MutS domain V
    1.3e-29  102.8   0.7    2.9e-29  101.6   0.1    2.0  2  MutS_I       MutS domain I
    1.2e-27   97.4   1.2    1.2e-27   97.4   1.2    2.4  2  MutS_III     MutS domain III
    4.4e-07   30.2   2.4    4.4e-07   30.2   2.4    2.2  2  MutS_IV      MutS family domain IV
    3.6e-06   27.3   1.4    1.2e-05   25.7   0.0    2.6  3  MutS_II      MutS domain II
  ------ inclusion threshold ------
       0.54   10.9   0.0       0.54   10.9   0.0    3.3  3  U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N


Domain annotation for each model (and alignments):
>> MutS_V  MutS domain V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.48   1.4e+03     140     165 ..     265     294 ..     238     309 .. 0.68
   2 !  209.7   0.0   1.3e-65   3.8e-62       2     184 ..     821    1008 ..     820    1012 .. 0.92

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.48
                 EE....EETTEEEEEEEEEES--SS--HHH CS
      MutS_V 140 vk....eeeedivflykvkegaaeksyGik 165
                 +k    + +++ vf++++k+  ++  +Gi+
  CCD26595.1 265 IKkndpTANKTQVFQREIKNTFSKATFGIN 294
                 223344667888999999999999999996 PP

  == domain 2  score: 209.7 bits;  conditional E-value: 1.3e-65
                  EEE-STTSSHHHHHHHHHHHHHHHHHT--BSSSEEEEE--SEEEEEE--------SS-HHHHHHHHHHHHHTT--TTSEEEEESTS-SS-HHHHHHH CS
      MutS_V    2 litGpnmaGkstylrqvalivllaqiGsfvpaekaeisivdkiftRvgasDdlakgkstFmvEmlEtasilknatekslvilDElGRGtstydGlai 98  
                  +i Gpnm+Gks+y+rqval+v+laqiGs+vpa+++e+si+d+++tR+ga+D++ +g stF vEmlE+ +i+k++t++sl++lDE+GRGt t+dG ai
  CCD26595.1  821 IISGPNMGGKSSYIRQVALLVILAQIGSYVPADYMEMSIFDQVLTRIGAHDNILRGDSTFKVEMLEVLEIVKKSTDNSLLLLDEVGRGTGTQDGKAI 917 
                  9************************************************************************************************ PP

                  HHHHHHHHHHTT--.EEEEEES-GGGGGHHHHSTTEEEEEEEEE......EETTEEEEEEEEEES--SS--HHHHHHHTT--HHHHHHHHHHH CS
      MutS_V   99 alavaeyllekika.ktlfatHyheltklaekleevknlhlavk......eeeedivflykvkegaaeksyGikvaklaglPesvverArevl 184 
                  +++++ey+l+   +   lf+tH+ e+ ++++k+  +k++h++ +      e+  +++flyk+k+g +++syG++vakla++ ++++++A e  
  CCD26595.1  918 SYSLLEYFLHDSSCpLILFTTHFPEMGDITSKF--LKCYHMDYVeenrpgEKWPSVIFLYKLKPGFTNNSYGLNVAKLANIDTDIINAAYELS 1008
                  *******99999983579***********9875..56666666533555555579**********************************9875 PP

>> MutS_I  MutS domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.1   9.9e-33   2.9e-29       1     110 [.     166     292 ..     166     295 .. 0.92
   2 ?   -3.6   0.1       4.4   1.3e+04      14      83 ..     724     742 ..     719     755 .. 0.54

  Alignments for each domain:
  == domain 1  score: 101.6 bits;  conditional E-value: 9.9e-33
                 HHHHHHHHCCCHH-TTCEEEEEETTEEEEECHHHHHHHHHCSSSSTT.E........SSSSC..EEEEEEEHHHHHHHHHHHHHTT-EEEEEEE-S-HH CS
      MutS_I   1 tplmkqylelkkkykdavlffrvGdfYelfgeDAviaareleitltkrk........ksseke.ipmagvPehalekylrkLvekgykVavveqtetpa 90 
                 tpl +q++elk k+kd++l++rvG++Y++f+eDAvi++++l+i+l+  k        ++ + + ++++++P+++l+ +l++L+ ++ kVavveqtet a
  CCD26595.1 166 TPLDQQVKELKLKNKDKILIIRVGYKYKCFAEDAVIVSNILHIKLVPGKltirnsnpHDDQYKqFAYCSFPDTRLNVHLERLIFNNLKVAVVEQTETIA 264
                 8*********************************************999999999994455555*********************************** PP

                 HH........S.S--EEEEEEEBTTC-T CS
      MutS_I  91 ek........kgvvkrevvrviTpGtlt 110
                 +k        ++v++re+ ++++++t+ 
  CCD26595.1 265 IKkndptankTQVFQREIKNTFSKATFG 292
                 **8888877546**************86 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 4.4
                 -TTCEEEEEETTEEEEECHHHHHHHHHCSSSSTT.ESSSSC.EEEEEEEHHHHHHHHHHHHHTT-EEEEE CS
      MutS_I  14 ykdavlffrvGdfYelfgeDAviaareleitltkrkkssekeipmagvPehalekylrkLvekgykVavv 83 
                 y + +l+ ++ +                                                   +y+V ++
  CCD26595.1 724 YHKDLLVQECEK---------------------------------------------------QYTVFIC 742
                 344444444444...................................................5555555 PP

>> MutS_III  MutS domain III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   3.3         6   1.8e+04     126     138 ..     108     121 ..      45     264 .. 0.57
   2 !   97.4   1.2     4e-31   1.2e-27       1     191 []     457     768 ..     457     768 .. 0.85

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 6
                 HHH.HHHHHHB-SS CS
                 xxx.xxxxxxxxxx RF
    MutS_III 126 sla.elleeaidee 138
                 +la e +++++ e+
  CCD26595.1 108 NLAsEAVTDSNHEK 121
                 12222222222222 PP

  == domain 2  score: 97.4 bits;  conditional E-value: 4e-31
                 HHHHHTTSSS-TTS.SSSS-HHHHH---SSHHHHHHHHHHHH--BS-HHHHHHHHHHHHH.T....TT.HHHHHHHHTT---HHHHHHHHHTT---HHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    MutS_III   1 aTlrnLeilenlrggskegsLlgvldrTvTamGaRlLrewllqPltdleeInaRldaVee.le..neelreelrellrrlpDleRllsrislgkakard 96 
                 +T+++L i++  +g   +gsL+++ld+T+T++G   Lrew+l+P+td   I++Rlda+e+ +   n+ + e++ + l++ p+l R l+ri++g+ + ++
  CCD26595.1 457 STIESLDIITENNG---KGSLMWLLDHTRTSFGLQKLREWILHPSTDSLIIEERLDAIECiIGevNTIFFESFNQILKTTPNLLRTLNRIAYGTTSRKE 552
                 69******765454...89****************************************95436677778888899*****************99999* PP

                 HHHHHHHHHHHHTTTTT---SSTHHHHH....HHHH...HHHHHHB-SS--SSGGGS--B-T..................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxx....xxxx...xxxxxxxxxxxxxxxxxxxxxxx..................................... RF
    MutS_III  97 lkallealkaleelvallekeklaesee....esla...elleeaideeplalekegedlra..................................... 151
                 ++ +l+ + a++el   +++   ++  e       a    ll++ i+++ ++ +k++++ +                                      
  CCD26595.1 553 IYYFLKNMCAINELFINHSNYLDKQVYEsdgnI--AsksTLLTK-IITDISEFSKQEQIPDLlaminisavmeknmekqvigffnlnnydhaseilriq 648
                 999888888888776666555444333355441..334356665.777777777777777778888999999999999999999999************ PP

                 ................................................................................HHHHHHHHHHHHHHHHHHT CS
                 ................................................................................xxxxxxxxxxxxxxxxxxx RF
    MutS_III 152 ................................................................................iealeqelfqelleeveea 170
                                                                                                 + +++++ +  ++ +++++
  CCD26595.1 649 qdiesvkyklndelkkirkllkrpyldykdeinyfievkntdvknipdswikmnntlrvsrfntpetkqlveklqyhkdlLVQECEKQYTVFICRLTNE 747
                 ****************************************************************************99995555566677777788666 PP

                 HHHHHHHHHHHHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxx RF
    MutS_III 171 lerlrrlaealaeLDvllSlA 191
                  + l+++++ +a+ D++lSl+
  CCD26595.1 748 YSILKNVIDNIATYDCILSLS 768
                 7******************95 PP

>> MutS_IV  MutS family domain IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       5.5   1.7e+04      61      84 ..     327     353 ..     320     359 .. 0.60
   2 !   30.2   2.4   1.5e-10   4.4e-07       4      90 ..     642     726 ..     639     728 .. 0.91

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 5.5
                 SEEEEEECTCEEE...EECCCHHHHHH CS
     MutS_IV  61 efirlqtlknser...yttaelkklea 84 
                 ++i+  +l n+e      t+elk+le+
  CCD26595.1 327 YYIISANLNNGEIiynTFTDELKALEN 353
                 555566666665542224677777776 PP

  == domain 2  score: 30.2 bits;  conditional E-value: 1.5e-10
                 HHHHHHHHHHHHHHHHHHHHHCCCCCCCT-TTBEECCCSSSEEEEEE-TCCCTTT--SEEEEEECTCEEEEECCCHHHHHHHHHHHH CS
     MutS_IV   4 eeLdelrdrleelekeleeleekereklgikslkveynkvlGyylevtrseakkvpkefirlqtlknseryttaelkkleaelleae 90 
                 +e+  +++ +e ++ +l+++++k r+ l+ + l+  y   + y++ev +++ k++p+ +i++ ++    r+ t+e+k+l ++l+ ++
  CCD26595.1 642 SEILRIQQDIESVKYKLNDELKKIRKLLKRPYLD--YKDEINYFIEVKNTDVKNIPDSWIKMNNTLRVSRFNTPETKQLVEKLQYHK 726
                 6888999********************9996655..557789****************************************98665 PP

>> MutS_II  MutS domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.2       3.5   1.1e+04      54      87 ..      61      84 ..      46     126 .. 0.51
   2 ?   -2.7   0.0       2.1   6.4e+03      64      99 ..     264     300 ..     228     306 .. 0.45
   3 !   25.7   0.0   3.9e-09   1.2e-05      10      82 ..     321     394 ..     311     421 .. 0.78

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 3.5
                SS-SCCCHHHHHHCHCTTT-EEEEESCCCCSHCC CS
     MutS_II 54 edlsestaeeessklrelrsrvgvretvefesek 87
                +d           ++ ++++  +v++t+ +++++
  CCD26595.1 61 SDS----------ESDNEINLTSVYKTTTDAIDE 84
                333..........233333333444333333332 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 2.1
                 HHHCHCTTT-EEEEESCCC.CSHCCHHHHCHHHB--S CS
     MutS_II  64 essklrelrsrvgvretve.fesekaserleedfsve 99 
                  + k  ++ ++ +v++ ++    +ka+  ++++f+++
  CCD26595.1 264 AIKKNDPTANKTQVFQREIkNTFSKATFGINDQFAKK 300
                 3334444444555554433033334555666666555 PP

  == domain 3  score: 25.7 bits;  conditional E-value: 3.9e-09
                 TTTSE.EEEEEEETTTTEEEEEEEEE....-HHHHHHHHHH-ESEEEEESS-SCCCHHHHHHCHCTTT-EEEEESCCC CS
     MutS_II  10 regrr.vGlafiDlstgefvvsefed....feeleaeLsrlsPkElllpedlsestaeeessklrelrsrvgvretve 82 
                 re++  + +++++l++ge+ + +f+d     e+l+ ++++l+P E++ p++l +    + +s  ++ r  v+++++++
  CCD26595.1 321 RENSIqYYIISANLNNGEIIYNTFTDelkaLENLKLRIKHLEPIEIISPKKLPN----HILSLFKPSRCLVSYTDNEH 394
                 677778*********************************************954....45566666666555555544 PP

>> U1snRNP70_N  U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   3.5       3.7   1.1e+04      49      76 ..     119     146 ..      90     161 .. 0.50
   2 ?   10.9   0.0   0.00018      0.54       2      48 ..     371     419 ..     370     445 .. 0.68
   3 ?   -3.1   0.1       4.2   1.3e+04      13      32 ..     670     689 ..     655     694 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.7
  U1snRNP70_N  49 deeeqeppektetkeekkererkekkek 76 
                  +e+++++ +k+   ++k++++ k+ k+k
   CCD26595.1 119 HEKNPKSAKKSIGVDTKRQEKSKTIKRK 146
                  2222223333333333333333333333 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00018
  U1snRNP70_N   2 kLPpnLlkLFaprpplpylppldydpe.krkt.kkkitGvaaflselke 48 
                  kLP+++l LF+p   l    + +++ + +rkt  ++i  + +f +elk+
   CCD26595.1 371 KLPNHILSLFKPSRCLVSYTDNEHHCDnERKTtLNEIGEMLDFAKELKD 419
                  9***********8887655555555551666655556666666666654 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 4.2
  U1snRNP70_N  13 prpplpylppldydpekrkt 32 
                   rp l y+  ++y +e ++t
   CCD26595.1 670 KRPYLDYKDEINYFIEVKNT 689
                  48999999999998888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1056 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1688  (0.0941491); expected 358.6 (0.02)
Passed bias filter:                      491  (0.0273858); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.79u 0.31s 00:00:01.10 Elapsed: 00:00:00.46
# Mc/sec: 6849.39
//
Query:       CCD26596.1  [L=2102]
Description: hypothetical protein NDAI_0I00270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   3.7e-127  424.2   1.7   3.7e-127  424.2   1.7    3.8  4  Not1             CCR4-Not complex component, Not1
    8.6e-85  283.7   4.5    4.7e-84  281.3   4.5    2.4  1  CNOT1_CAF1_bind  CCR4-NOT transcription complex subunit 1 CAF
      2e-83  279.6   3.5    7.3e-83  277.7   3.5    2.1  1  CNOT1_HEAT_N     CCR4-NOT transcription complex subunit 1 HEA
    2.3e-45  154.1   0.3    2.3e-45  154.1   0.3    3.4  4  CNOT1_TTP_bind   CCR4-NOT transcription complex subunit 1 TTP
    2.3e-42  144.4   7.6    2.3e-42  144.4   7.6    3.2  2  DUF3819          Domain of unknown function (DUF3819)
    1.2e-11   45.0   0.3    1.2e-11   45.0   0.3    5.7  7  CNOT1_HEAT       CCR4-NOT transcription complex subunit 1 HEA
  ------ inclusion threshold ------
       0.15   11.9   0.2        9.2    6.2   0.0    2.7  2  KN_motif         KN motif


Domain annotation for each model (and alignments):
>> Not1  CCR4-Not complex component, Not1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       1.3   3.4e+03     320     346 ..     944     972 ..     919     977 .. 0.70
   2 ?   -3.5   0.3       1.5   3.7e+03     162     204 ..    1177    1224 ..    1141    1243 .. 0.51
   3 ?    0.3   1.1       0.1   2.5e+02     143     227 ..    1363    1445 ..    1328    1457 .. 0.72
   4 !  424.2   1.7  1.5e-130  3.7e-127       3     367 ..    1730    2095 ..    1728    2096 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 1.3
        Not1 320 lERlivnrPhpW..GllitfieLikneky 346
                  E  i   P pW  G+l +++eL  + + 
  CCD26596.1 944 SESKIFRPPNPWtvGILKVLLELNEKANW 972
                 57788999999988889899998766555 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 1.5
        Not1  162 keaPkilsdvteaLee..aglkkevdeylk...eepsesllaeilekl 204 
                  + aP++++++++ ++e  + ++++++++++   ++  ++++++i e+l
  CCD26596.1 1177 SLAPNLMNSPNAPMDEldTAINENINTAVSlieKAAMDKAVQDISEQL 1224
                  345666665555554322344455555544444333344444444444 PP

  == domain 3  score: 0.3 bits;  conditional E-value: 0.1
        Not1  143 mklpdpftpglkvdrleeikeaPkilsdvteaLeeaglkkevdeylkeepsesllaeilekleleekeketgekikvnvklinal 227 
                  ++ p+ + +gl+ +  ++ +   ++++ ++++++e+  k++++e+ ++++ ++++ +il+ + ++ ++  ++  +kv + ++n+l
  CCD26596.1 1363 VSQPQNLPNGLQAELEQNHRVLVHLMDTLVSQMKENADKQSMEELGEQNQIKTTIYQILTFIARSGQK--DQLALKVAQAVVNSL 1445
                  44555666677777777777777777777777777777777777777777777777777777644333..346666666666665 PP

  == domain 4  score: 424.2 bits;  conditional E-value: 1.5e-130
        Not1    3 elnsaee.kaleeeeeeillafaealhalqPlkfpgFvfaWleLisHRlflpklLelkdqkgwealakLlvdllkfleellkkaelsevvkvlykgt 98  
                  +++++++ k+l++ + +++++fa++lh+lqP +fpgF+faW++LisHR+flp +L+l+++ gwe+l+ L++dl+kfl++++ k ++s++++v+ykgt
  CCD26596.1 1730 KVSDSQTrKELANYDVDFYNTFASYLHSLQPFAFPGFSFAWISLISHRMFLPIVLRLPQHGGWEKLMLLIIDLFKFLDQYTIKGNISDAISVVYKGT 1826
                  5566666689*************************************************************************************** PP

        Not1   99 lrillvLlhDfPeFLaenhyslcdaippsciqLrNlilsAfPkkmklpdpftpglkvdrleeikeaPkilsdvteaLeeaglkkevdeylkeepses 195 
                  +ri+l +++D+P+FL+enhy+l++++p+++iqL+N+ilsA+P km +p p+  +l+vd le+++e+P +++d+++++  a+lkk+vd+yl+ +ps+s
  CCD26596.1 1827 IRIILGISNDVPDFLIENHYELMNNLPATYIQLKNVILSAIPLKMLVPSPYGVELDVDALESCEEPPMVFYDPVADI--ASLKKPVDNYLR-IPSNS 1920
                  *****************************************************************************..9***********.***** PP

        Not1  196 llaeilekleleekeketg...ekikvnvklinalVlyvgieaieeakkksskavfstkssevallskLikeldpearYlllsaianqLRYpnshTh 289 
                  ll++i++ l +e++e ++g   ++++vn kl++a+Vl+v iea  e+ ++ss+avf+tkss+++ll +L++e++ e ++++++ +++qLRYpn+hT 
  CCD26596.1 1921 LLKTIMNGLLREDYELKSGigyDTLTVNSKLVRAIVLHVVIEAGLENGRTSSNAVFNTKSSYYQLLFDLVHEGSIELKFQVIQVMIEQLRYPNIHTR 2017
                  *********9888887777999*************************************************************************** PP

        Not1  290 yfskvllelFsekesdseekeiqeqItrvLlERlivnrPhpWGllitfieLiknekykfwelpfikaapeieelfesl 367 
                  ++++vl+++F+++ +++e++++qe+I+r ++ER++vn+PhpWGl ++f++L++++k+k++el+fik+ peie+++++l
  CCD26596.1 2018 WMIFVLKNMFTSEGWSDEKSTVQEIILRSIIERILVNKPHPWGLSVIFTQLLRSDKVKLLELDFIKRVPEIENIIKQL 2095
                  ************99*99999******************************************************9987 PP

>> CNOT1_CAF1_bind  CCR4-NOT transcription complex subunit 1 CAF1-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.3   4.5   1.8e-87   4.7e-84       2     219 ..     789    1004 ..     788    1010 .. 0.98

  Alignments for each domain:
  == domain 1  score: 281.3 bits;  conditional E-value: 1.8e-87
                       -----HHHHHHHHHHHHS--TTTHHHHHHHHHHH--GGGHHHHHHHHHHHTTTT-GGGHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHB CS
  CNOT1_CAF1_bind    2 ieepeeevqdkilfilnnlseenleeklkelkellkeeylkwfaqyLVekrvsiepnfhklYlkllekleskkLaeevlketlknikklLns 93  
                       +e+p++++ +k+lf++nn++ +n+++k+++lk +l+++y++wf++yLV++r+++epn+h+lY+k+l  ++s+ L++++l++tlk++ ++L +
       CCD26596.1  789 QESPPKDFVEKVLFVVNNITIDNFDTKINDLKPILTPNYFSWFSTYLVNQRAKTEPNYHTLYSKVLVGINSEALHAYMLNDTLKQLYIILAT 880 
                       689***************************************************************************************** PP

                       S-G..GGS-HHHHHHHHHHHHHHTGGGT----TTTB-HHHHHHHHHHTT-HHHHHHHHHHHHGGGGG-TTTSTT-HHHHHHHHHHHHHHHHT CS
  CNOT1_CAF1_bind   94 ektlessserslLknLgsWLGsiTlarnkpikhknlalkeLLleayekgrlevvipfvckvLesakkSkvFkppnpWlmailklLaelyela 185 
                       +++  +  ++++LknL+sWLG+iTla ++p+kh+n+a++eLLl+ay+++rlevvipf+c++L+ a++Sk+F+ppnpW+++ilk+L el+e+a
       CCD26596.1  881 RDI--QLIDKNHLKNLSSWLGHITLAIDRPLKHQNIAIRELLLDAYSEKRLEVVIPFICRMLQLASESKIFRPPNPWTVGILKVLLELNEKA 970 
                       ***..*************************************************************************************** PP

                       ---HHHHHHHHHHHHHTT--TTSS---S----XX CS
  CNOT1_CAF1_bind  186 dlklnlkFeievLckeLkldlkdlepsellkere 219 
                       ++kl+l+Fe+evL+k++kl +k ++ps+++ + +
       CCD26596.1  971 NWKLSLTFEVEVLMKSFKLGMKAIDPSNFIGQPN 1004
                       *****************************98876 PP

>> CNOT1_HEAT_N  CCR4-NOT transcription complex subunit 1 HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.7   3.5   2.8e-86   7.3e-83       1     229 []     172     397 ..     172     397 .. 0.97

  Alignments for each domain:
  == domain 1  score: 277.7 bits;  conditional E-value: 2.8e-86
                   XXXXXXXXXXXXXXXX..XXXXXXX--HHHHCCHHHHHHHCT-------------------------CHHHHHHHHHHHTS-GGGS-HHHHHHHHHH CS
  CNOT1_HEAT_N   1 fkellsevepekllpeklLadlLlslkgeelndviALlLaEiLsPGSqnlqkksknsaltpsslpeAtakGaqlsaalkklekekinWnrvfnlmst 97 
                   f+++l++ +p++l+++  +++lL+sl+ge+lnd++ALlL+E+LsPGSqn+q ++ +s +tp+ ++eAt+ G+++++a+k + +++i+Wnrvfnlmst
    CCD26596.1 172 FQTVLQKATPNSLEST--FTALLVSLSGETLNDMVALLLSELLSPGSQNVQADPYRSYFTPAIVAEATTVGTHIANAFKGIPEDSIDWNRVFNLMST 266
                   89**************..******************************************************************************* PP

                   S-----.-----HHHHHHHHHHH-SHHHHHHHHHS---HHHHHHHHHHHHT--CCCT---CCC-TT--BS-SSS--S..S--GGGBHHHHHHHHHHH CS
  CNOT1_HEAT_N  98 kyflskkavkptlaslsqllssLdkgeliDqFlscdwnisfkleLlilLhkldpqqgcfDllslknlkkvekkienenskrslLylisvakLelell 194
                   kyfl++ ++kptlasls+l+++L++g+l+DqF++cdw+i fkleL+i+Lhk++pq+gc+Dll+++ +kkv ++ ++  + ++lLyl+ va+L+le++
    CCD26596.1 267 KYFLKT-PMKPTLASLSSLFAALHTGKLFDQFFNCDWHIIFKLELAIQLHKWSPQNGCLDLLAIEGTKKVCDSQDSMINNNTLLYLMAVATLDLEIF 362
                   ******.***************************************************************77534444679**************** PP

                   HTCCCS---HHHHHHHHHHHHHHHH-HHHHHHHHH CS
  CNOT1_HEAT_N 195 lkrdelkenkllsllqelfeedynvvPeylalall 229
                   l+r+el++n++l+l+qe+f+ed+n++P +l++al+
    CCD26596.1 363 LLREELTNNPMLQLFQEFFFEDFNSYPVHLVYALI 397
                   *********************************97 PP

>> CNOT1_TTP_bind  CCR4-NOT transcription complex subunit 1 TTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1       2.7     7e+03      20      47 ..     152     178 ..     137     189 .. 0.68
   2 !  154.1   0.3     9e-49   2.3e-45      26     188 ..     595     757 ..     586     760 .. 0.94
   3 ?   -6.2   4.4         7   1.8e+04     168     187 ..    1034    1053 ..    1019    1064 .. 0.56
   4 ?   -3.2   4.9       1.5   3.9e+03       4      28 ..    1295    1319 ..    1292    1339 .. 0.60

  Alignments for each domain:
  == domain 1  score: -4.0 bits;  conditional E-value: 2.7
  CNOT1_TTP_bind  20 qlnseteqqvskeveeeansyFqklYse 47 
                     ++ +e ++q+ +++  + ++yFq ++++
      CCD26596.1 152 STLAELKTQI-SNIKMNNQKYFQTVLQK 178
                     4445556665.67888888888888774 PP

  == domain 2  score: 154.1 bits;  conditional E-value: 9e-49
  CNOT1_TTP_bind  26 eqqvskeveeeansyFqklYseeisveevietLkkfksskskrekevfacmiknLfdEyrffpqYPekeLkitaqLfGsiieeqLvsykalgiaL 120
                     + ++++++e+e ++y+qk+Ys+e+ + ++ie L+k+++s+++r+++vfac+ +  + E++ff++YP + L +t+ LfGs+i  qL+ +  l +aL
      CCD26596.1 595 SPTIPQDIEKEMQNYLQKMYSGELAIKDIIEVLRKLRDSDNPRDQDVFACITHAVIAESNFFKDYPLDALATTSVLFGSMILFQLLRGFVLDVAL 689
                     56788****************************************************************************************** PP

  CNOT1_TTP_bind 121 rivLealrkppgskmfefgikaLeqfksrLkeypqycqhl.asiphlkefppeLveyiesglkskeska 188
                     +i+L+  ++ p+skmf+f+i+a+ +f+ rL++ypqyc+ l +++p l+ ++ +++++i++ +ks+e++a
      CCD26596.1 690 KIILDFAKEGPDSKMFKFAIQAIYAFRIRLADYPQYCKDLlDQVPGLQ-TQSQVYQFIQDVAKSSEQQA 757
                     ***************************************99******9.67778888888888887765 PP

  == domain 3  score: -6.2 bits;  conditional E-value: 7
  CNOT1_TTP_bind  168 efppeLveyiesglkskesk 187 
                      +++++++ y ++++++++++
      CCD26596.1 1034 QHQQQMMLYQQRQQQQQQQQ 1053
                      33333333333333333333 PP

  == domain 4  score: -3.2 bits;  conditional E-value: 1.5
  CNOT1_TTP_bind    4 kqklqeqakesleelsqlnseteqq 28  
                      +q++q q++++++++++l ++t++q
      CCD26596.1 1295 QQQQQRQQQQQQQQQQALGQQTSDQ 1319
                      3334444444444444444444444 PP

>> DUF3819  Domain of unknown function (DUF3819)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.2   2.5         7   1.8e+04      79      99 ..    1032    1052 ..    1015    1065 .. 0.49
   2 !  144.4   7.6     9e-46   2.3e-42       1     146 []    1093    1235 ..    1093    1235 .. 0.98

  Alignments for each domain:
  == domain 1  score: -6.2 bits;  conditional E-value: 7
                  HHHHHHH-----..------- CS
     DUF3819   79 issnlrqllknaltkqlkeqe 99  
                  ++++ +q++  + ++q+++q+
  CCD26596.1 1032 MQQHQQQMMLYQQRQQQQQQQ 1052
                  333333333333222222222 PP

  == domain 2  score: 144.4 bits;  conditional E-value: 9e-46
                  HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----..----- CS
     DUF3819    1 pdlkklvqlaierairEiiqpvversvtiAvitteelvkKDFalepdenkmrkaahlmvrnLagsLalvtckepLresissnlrqllknaltkqlke 97  
                  pdlk+++q+a+ +++rEi+ p ve+s++iAv tt++++ KDFa+epde+k+++aa++mv +La+sLa +t+ + L+e i++++++l+ n   ++ ++
  CCD26596.1 1093 PDLKRIFQMALAKSVREILLPAVEKSSNIAVLTTSKIIMKDFATEPDEMKLNAAATTMVMQLAQSLARATSIDSLKEGIRTTTQSLAPNL--MNSPN 1187
                  78****************************************************************************************..68888 PP

                  --.---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH CS
     DUF3819   98 qeleqaiqilvndNlelacaliekaaaekavreideklakelearkthr 146 
                  ++  +++++++n+N++ a++liekaa++kav++i e+l++++++r++h+
  CCD26596.1 1188 AP-MDELDTAINENINTAVSLIEKAAMDKAVQDISEQLMQAVAVRRYHK 1235
                  88.99*****************************************996 PP

>> CNOT1_HEAT  CCR4-NOT transcription complex subunit 1 HEAT repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   1.1       1.9   4.8e+03       3      56 ..      90     149 ..      88     164 .. 0.74
   2 ?    1.2   0.0      0.14   3.6e+02      45      82 ..     273     316 ..     245     323 .. 0.82
   3 !   45.0   0.3   4.5e-15   1.2e-11       2     149 ..     411     551 ..     410     552 .. 0.88
   4 ?    0.2   0.1      0.28   7.3e+02      70     130 ..     705     764 ..     689     779 .. 0.71
   5 ?   -6.9   4.1         7   1.8e+04     116     134 ..    1036    1054 ..    1020    1059 .. 0.50
   6 ?   -4.1   3.3         6   1.5e+04     116     134 ..    1297    1315 ..    1290    1325 .. 0.42
   7 ?   -2.5   0.2       1.9   4.8e+03     103     108 ..    1416    1421 ..    1371    1465 .. 0.49

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 1.9
                 HHHHHHHHHHH.HS-GGGH....HHHC--.HHHHHHHHHS-S-........-SHHHHHHH CS
  CNOT1_HEAT   3 lidelfplfls.nhpnsal....vlhklw.eidrqlllkalvdayakdplelsrIldvaq 56 
                 l++ lf+++++ + +  ++    ++++l+ ++  +l l++l+ ++ k +l+  +I++++ 
  CCD26596.1  90 LLKDLFETLIDkDFQFIQIlldqIFNNLEfRQLTSLTLDHLIRIFDKTSLREQKIIELLN 149
                 788899999984444444466666666667777999999999999999999999998876 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.14
                 ........-SHHHHHHHHTT-HHHHHHHS.-TTCHHHCHHHHHH CS
  CNOT1_HEAT  45 p.....lelsrIldvaqelkilsellnkl.pfnfaldLaalasr 82 
                 p     ++ls ++  ++  k+ +++ n+   + f+l+La+  ++
  CCD26596.1 273 PmkptlASLSSLFAALHTGKLFDQFFNCDwHIIFKLELAIQLHK 316
                 4444656799******************95555******97775 PP

  == domain 3  score: 45.0 bits;  conditional E-value: 4.5e-15
                 HHHHHHH.HHHHH..HS-GGGH..HHHC--HHHHHHHHHS-S-........-SHHHHHHHHTT-HHHHHHHS-TTCHHHCHHHHHHHT---HHHHHHHH CS
  CNOT1_HEAT   2 elidelf.plfls..nhpnsal..vlhklweidrqlllkalvdayakdplelsrIldvaqelkilsellnklpfnfaldLaalasrreyldlekwledk 95 
                 ++ide++ +l+++  + ++ a+  ++++l++ d+ + + +++ + +k+p  +  +l+++   ++l+++lnklpf+ a+++ + a + ++ ++ ++++++
  CCD26596.1 411 NVIDEILvTLMVQiyETTPLAIgnIIDQLPNPDKIVDVGRILILKEKKP--MGPLLQILLTKGKLDSFLNKLPFENAIKVLPTANSLGWENCNDFIKQN 507
                 689999989999977666666699******8887777777776544444..9*********************************************** PP

                 --TT...THHHHHHHHHHHHH--T.......TTSSSSTTTS--HHHHHHHHHHH CS
  CNOT1_HEAT  96 lkehgekfvqalldfLeekakqelerqeekpsnepepkskslsvetvatlLevL 149
                 l++      q +ld L+++ k ++       sn p  +s+ ++++t+++l+ +L
  CCD26596.1 508 LDST---NTQIILDSLDTQLKLTE-------SNVPMGSSQIFDMKTMHSLILIL 551
                 **88...9**************99.......5678999*************988 PP

  == domain 4  score: 0.2 bits;  conditional E-value: 0.28
                 TTCHHHCHHHHHHHT---HHHHHHHH--TT....THHHHHHHHHHHHH--T.......TTSS CS
  CNOT1_HEAT  70 fnfaldLaalasrreyldlekwledklkehgek.fvqalldfLeekakqelerqeekpsnep 130
                 f+fa+  a++a r    d+ ++ +d l++       +++ +f+++ ak+ + +q++kp++++
  CCD26596.1 705 FKFAIQ-AIYAFRIRLADYPQYCKDLLDQVPGLqTQSQVYQFIQDVAKSSE-QQAQKPATQE 764
                 556665.788899999999999999999875446999********666666.4544443332 PP

  == domain 5  score: -6.9 bits;  conditional E-value: 7
                  H--T...........TTSSSSTT CS
  CNOT1_HEAT  116 kqelerq....eekpsnepepks 134 
                  +q    q    ++ +++++++++
  CCD26596.1 1036 QQ----QmmlyQQRQQQQQQQQQ 1054
                  33....13333333333333333 PP

  == domain 6  score: -4.1 bits;  conditional E-value: 6
                  H--T.......TTSSSSTT CS
  CNOT1_HEAT  116 kqelerqeekpsnepepks 134 
                  +q+ ++q+++++++   ++
  CCD26596.1 1297 QQQRQQQQQQQQQQALGQQ 1315
                  1222222333333333334 PP

  == domain 7  score: -2.5 bits;  conditional E-value: 1.9
                  THHHHH CS
  CNOT1_HEAT  103 fvqall 108 
                   + ++l
  CCD26596.1 1416 TIYQIL 1421
                  333333 PP

>> KN_motif  KN motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0    0.0036       9.2       4      22 ..    1873    1891 ..    1872    1892 .. 0.88
   2 ?    2.6   0.1     0.048   1.2e+02      12      24 ..    2077    2089 ..    2076    2091 .. 0.91

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.0036
    KN_motif    4 VeTPYGfhLDLDFlKYved 22  
                  V +PYG +LD D l  +e+
  CCD26596.1 1873 VPSPYGVELDVDALESCEE 1891
                  679*********9988886 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.048
    KN_motif   12 LDLDFlKYvedie 24  
                  L+LDF+K v +ie
  CCD26596.1 2077 LELDFIKRVPEIE 2089
                  89********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2102 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2205  (0.122985); expected 358.6 (0.02)
Passed bias filter:                      682  (0.0380389); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.35u 0.29s 00:00:01.64 Elapsed: 00:00:00.48
# Mc/sec: 13035.92
//
Query:       CCD26597.1  [L=408]
Description: hypothetical protein NDAI_0I00280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-89  298.7   0.1    5.1e-89  298.5   0.1    1.1  1  CDC50     LEM3 (ligand-effect modulator 3) family / CDC50 fam


Domain annotation for each model (and alignments):
>> CDC50  LEM3 (ligand-effect modulator 3) family / CDC50 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.5   0.1   2.8e-93   5.1e-89       2     279 ..      67     375 ..      66     376 .. 0.90

  Alignments for each domain:
  == domain 1  score: 298.5 bits;  conditional E-value: 2.8e-93
       CDC50   2 lvasksvkeleidYtsecataaesek.............................easkekktCtvqftvpedlkapvyvyYeLtnfyQnhrryvkSrd 71 
                 ++++  v++l+idY+ +c+  a++++                             e+++e+  C++qf++p+++++++yvyY+L+nfyQnhr+yv+S+d
  CCD26597.1  67 IITAYGVQDLSIDYS-KCDVLAPRSDefeeipskyirhhfkkrlhskpswrlvqnENDEEEIVCQLQFEIPNKINKSIYVYYKLSNFYQNHRSYVESFD 164
                 6778899********.***99998889**************************988888999************************************* PP

       CDC50  72 dsqlkgkaks.s.lksssss.dCepletakekkekkkiiyPCGliAnslFNDtfslveesssk....ltkvnltkkgIawksdkekkfknktkyealee 163
                 ++qlkgk+++ + l     + +C pl+t ++++e++ki+yPCGliAns+FNDtfs +  + ++    +++  lt+k+I+w+ d++++fk+ t+y+  ++
  CCD26597.1 165 HNQLKGKVVKlDkL-----NtACRPLRTYHRGEEDEKIVYPCGLIANSMFNDTFSNKFVNIDSdddgVEDYLLTNKKISWSIDRHHRFKR-THYNV-SD 256
                 ********543323.....337*******9999999******************3332221113333444449****************7.76765.** PP

       CDC50 164 vvkPpnWakk.pe...eteipelkenedfivWmrtAalptFrKlyrrindeedLkagtyevdiennfpvksFkGtKsivlsttswlGgknpflgiaYlv 258
                 +v+PpnW+kk p+   e+++p+l+e+e+++vWmrtAa+p+F Kl+ + n+++ Lkag+y++di  n+pv+ F+G+Ks+++st+  +Gg+n  lg+++l+
  CCD26597.1 257 IVPPPNWMKKfPDgysEDNLPNLEEWEELQVWMRTAAFPKFYKLALK-NETSALKAGNYTIDIGLNYPVSIFGGSKSFIISTSVGIGGRNVSLGVVFLI 354
                 ********999556779******************************.999************************************************ PP

       CDC50 259 vGgiclvlaivflvthlikpr 279
                 v ++  ++a++flvt +++pr
  CCD26597.1 355 VTCVGGLFAMIFLVTLCLQPR 375
                 ***************999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       873  (0.0486921); expected 358.6 (0.02)
Passed bias filter:                      603  (0.0336327); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.26s 00:00:00.80 Elapsed: 00:00:00.42
# Mc/sec: 2887.21
//
Query:       CCD26598.1  [L=482]
Description: hypothetical protein NDAI_0I00290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-32  112.4  12.8    1.6e-23   83.1   2.6    2.8  3  Y_phosphatase2  Tyrosine phosphatase family


Domain annotation for each model (and alignments):
>> Y_phosphatase2  Tyrosine phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.3e-13   4.1e-09       1      68 [.       2      69 ..       2      83 .. 0.91
   2 !   83.1   2.6   8.8e-28   1.6e-23      51     157 ..     148     250 ..     112     257 .. 0.84
   3 ?   -2.9   0.7      0.25   4.4e+03      36      64 ..     392     408 ..     357     440 .. 0.50

  Alignments for each domain:
  == domain 1  score: 36.2 bits;  conditional E-value: 2.3e-13
                    B---TT-EEEETTEEEESS--HHHHHHHHHCT-SEEEE-SSS---HHHHHHHHHCT-EEEE------- CS
  Y_phosphatase2  1 lvpplnFsaveselyrssyprasnfsflksLkLktiislspeeesqdelqfleeekiklyhiaiesnk 68
                    lvpp nF+ +e ++yr s  + +n+sfl++L+Lk+ii +  +e s+  + f++   i+   i+i++ +
      CCD26598.1  2 LVPPANFGIAEDGIYRCSKIETINLSFLETLNLKKIIFIGGQEPSKFFKEFFNRSSINWNIIKISEFH 69
                    69****************************************9**99999********9999998755 PP

  == domain 2  score: 83.1 bits;  conditional E-value: 8.8e-28
                     HHHHCT-EEEE..-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHCCC--HHHHHHH CS
  Y_phosphatase2  51 fleeekiklyh..iaiesnkeelveiksdllkkalklllnkenypvllhckrGkhrtglvigclRklqkWslasilnEyrrFsgskkrivdeefi 143
                      + + ki +++  +++++n++ l+ iks++lkk+++llln +n+++ll++     +t+l+i +lRk+qkW++ si+nEyr+Fsg+++ +++e+f+
      CCD26598.1 148 TIRNSKIDYINkpYHLNDNDD-LMLIKSKCLKKTFQLLLNSNNFNILLVD-----KTALIISILRKIQKWHISSIINEYRLFSGKNRSYFAETFL 236
                     344445555433389999999.****************************.....9*************************************** PP

                     HC---HHHHHHHH. CS
  Y_phosphatase2 144 enfdselevekknk 157
                     e +++ ++++ + +
      CCD26598.1 237 EFINIIIKQDYDTI 250
                     ****9998887664 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 0.25
                     EEE-SSS---HHHHHHHHHCT-EEEE--- CS
  Y_phosphatase2  36 iislspeeesqdelqfleeekiklyhiai 64 
                       s++++            ++ + + + +
      CCD26598.1 392 SSSITKN------------NNTNNHTYTL 408
                     2222222............2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2253  (0.125662); expected 358.6 (0.02)
Passed bias filter:                      349  (0.0194657); expected 358.6 (0.02)
Passed Vit filter:                        58  (0.00323498); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.29s 00:00:00.96 Elapsed: 00:00:00.43
# Mc/sec: 3365.06
//
Query:       CCD26599.1  [L=56]
Description: hypothetical protein NDAI_0I00300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.4e-18   63.8   0.8    9.6e-18   63.6   0.8    1.1  1  NCE101    Non-classical export protein 1


Domain annotation for each model (and alignments):
>> NCE101  Non-classical export protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.8   5.4e-22   9.6e-18       1      45 []       5      54 ..       5      54 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.6 bits;  conditional E-value: 5.4e-22
      NCE101  1 YLlsrflDPlLaifiGvaaYylyEkrt....erpegh.rLneLlkkkynk 45
                YLl+++lDP+La+++G+a+Yy+yE+r+    ++ +g+ +L +Llk +ynk
  CCD26599.1  5 YLLGKYLDPTLAVAVGLASYYFYERRMsstsTSASGRpTLLTLLKSRYNK 54
                9************************8777899****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       269  (0.0150036); expected 358.6 (0.02)
Passed bias filter:                      225  (0.0125495); expected 358.6 (0.02)
Passed Vit filter:                        18  (0.00100396); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.26s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 427.75
//
Query:       CCD26600.1  [L=368]
Description: hypothetical protein NDAI_0I00310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-09   39.3   5.8    2.5e-09   38.2   5.8    1.7  1  PI31_Prot_C  PI31 proteasome regulator


Domain annotation for each model (and alignments):
>> PI31_Prot_C  PI31 proteasome regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   5.8   1.4e-13   2.5e-09       1      78 []     268     343 ..     268     343 .. 0.72

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 1.4e-13
  PI31_Prot_C   1 iGdsDLyPpglgph...dPLr..gpgglps..pgggdggggGmhvgpdhPlfkrsengpggrggpdgfelppavpPGARfD.Pvgp 78 
                  +Gd+DLyP+g++++   dP +  +p ++++  ++++++ +gGm+++p +      e ++++++        p+++PGA++D P+g+
   CCD26600.1 268 YGDNDLYPTGQKYPnlnDP-NslNPTAIRNkyGPDHPHFQGGMTFDPLQRNK--DEIDQSENR-------GPGWIPGAKYDdPFGR 343
                  7*************9**88.33433333336667778899***999998222..333333333.......379***********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1055  (0.0588432); expected 358.6 (0.02)
Passed bias filter:                      324  (0.0180713); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.21s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2758.79
//
Query:       CCD26601.1  [L=107]
Description: hypothetical protein NDAI_0I00320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.5e-18   66.4   0.0    2.3e-18   65.8   0.0    1.1  1  DUF3215   Protein of unknown function (DUF3215)


Domain annotation for each model (and alignments):
>> DUF3215  Protein of unknown function (DUF3215)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   1.3e-22   2.3e-18       5      66 ..       8      71 ..       4      73 .. 0.91

  Alignments for each domain:
  == domain 1  score: 65.8 bits;  conditional E-value: 1.3e-22
                HHH-SEEEEEETTS-EEEEEEGGGCTHHHHHHHCCHH-STCCEEEEES..SSEEEEEEEETTEE CS
     DUF3215  5 lpkaiGtltfDennnlvdasGiGkerieDilelsqveldkeGyavled..sdvlvhvfkkdgkt 66
                +p+ iGtl+fD+nnn++da+GiG++++++i els ++ld++G+++l++  ++++++++++d+k 
  CCD26601.1  8 IPNCIGTLIFDNNNNIIDATGIGETKLKEISELSIAQLDSNGFGLLREenENLIIQLWREDDKK 71
                8********************************************9751167999******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       406  (0.0226449); expected 358.6 (0.02)
Passed bias filter:                      256  (0.0142785); expected 358.6 (0.02)
Passed Vit filter:                        12  (0.000669307); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 906.27
//
Query:       CCD26602.1  [L=309]
Description: hypothetical protein NDAI_0I00330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-23   80.7  17.6      4e-15   55.3   0.7    3.4  3  PQ-loop   PQ loop repeat


Domain annotation for each model (and alignments):
>> PQ-loop  PQ loop repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   5.0   2.3e-12   4.1e-08       3      57 ..       7      61 ..       5      65 .. 0.92
   2 !   55.3   0.7   2.2e-19     4e-15       2      56 ..     187     241 ..     186     245 .. 0.94
   3 ?   -0.9   0.2     0.078   1.4e+03      32      43 ..     267     278 ..     265     290 .. 0.68

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.3e-12
     PQ-loop  3 eilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilngf 57
                ++lg+i+++ w++s +P i +N+k kS + +S++f++l+++G++    + +l+++
  CCD26602.1  7 NVLGLIYVISWSISMYPPIFTNWKLKSSKAISVDFVILNTFGYFYLSCSYFLQYY 61
                79*****************************************998888888876 PP

  == domain 2  score: 55.3 bits;  conditional E-value: 2.2e-19
     PQ-loop   2 seilgyislvlwlvsyiPQiikNykrkSteGlSilflllwllGdilsllylilng 56 
                 ++ l ++++ ++l++y+PQ+++N+ rkSt G+Si+ +ll+++G+i+sl +l+++ 
  CCD26602.1 187 CNNLFILKISMSLIKYFPQMLHNFERKSTFGFSIDGVLLDTTGSIASLCQLFIQL 241
                 57799***********************************************985 PP

  == domain 3  score: -0.9 bits;  conditional E-value: 0.078
     PQ-loop  32 GlSilflllwll 43 
                 GlS+ +l ++++
  CCD26602.1 267 GLSLVTLTFNFI 278
                 677777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       723  (0.0403257); expected 358.6 (0.02)
Passed bias filter:                      354  (0.0197445); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.26s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2281.32
//
Query:       CCD26603.1  [L=1836]
Description: hypothetical protein NDAI_0I00340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-63  212.6   0.0    2.2e-62  210.8   0.0    2.0  2  Pkinase         Protein kinase domain
    4.9e-34  117.8   0.0    1.6e-32  112.9   0.0    2.3  1  Pkinase_Tyr     Protein tyrosine kinase
    7.4e-06   25.5   0.0    2.8e-05   23.6   0.0    1.9  1  Kinase-like     Kinase-like
     0.0042   16.9   0.0      0.023   14.5   0.0    2.3  1  Chordopox_A30L  Chordopoxvirus A30L protein
  ------ inclusion threshold ------
      0.057   12.8   0.0       0.13   11.6   0.0    1.5  1  Kdo             Lipopolysaccharide kinase (Kdo/WaaP) family
       0.15   11.9   0.0       0.33   10.8   0.0    1.6  1  APH             Phosphotransferase enzyme family
        0.4    9.4   0.0        0.4    9.4   0.0    2.8  3  Pkinase_fungal  Fungal protein kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.3   3.2e+03     225     261 ..     763     812 ..     727     813 .. 0.61
   2 !  210.8   0.0   8.5e-66   2.2e-62       2     264 .]    1530    1811 ..    1529    1811 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 1.3
                 ...HHHTTS.............-HHHHHHHHHHT-SSGCCSTTHHHHHTS CS
     Pkinase 225 eklpeasei.............seeakdllkkllkkdpkkRltaeellqh 261
                  k++  ++              s+++ ++l++  + +p++R  ae+++++
  CCD26603.1 763 IKINDLKSWvgndelnvltpneSSSLDKMLEENNNITPNTRSFAEQVMKE 812
                 23333333366666677777778888999999999999999999998875 PP

  == domain 2  score: 210.8 bits;  conditional E-value: 8.5e-66
                  EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHH..HHHHHHHHHHHHHSCTTB--EEEEEEESSEEEEEEE--TTEBHHHHHHHHSS-- CS
     Pkinase    2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkke..kkvlrEikilkklkhpnivrlyevfeekdelylvleyveggeladllerkgsls 96  
                  +k + +G G+fG+V++av+ ++g+i AvK+i+ ++ + +k+    + +E+++l+ l+hpniv++y+v  + d++ +++ey+egg+la+lle+ ++ +
  CCD26603.1 1530 QKRNFIGGGTFGTVFSAVNLDNGEILAVKEIRIQDSTTMKKifPLIKEEMTVLEMLNHPNIVQYYGVEVHRDKVNIFMEYCEGGSLASLLEHGRIED 1626
                  56778******************************999999988999*******************************************9655566 PP

                  HHHHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.......................BCTTTSCGGGS-HHHH. CS
     Pkinase   97 eeeakkiakqilegleylHskgiiHrDlKpeNiLidekgelKitDFGlakelesssk.......................ltsfvgtseYlAPEvl. 169 
                  e  ++ ++ ++legl+ylH++g++HrD+KpeNiL+d +g +K +DFG a+++ ++ +                       +++++gt+ Y+APE + 
  CCD26603.1 1627 EMVTQIYTLELLEGLAYLHQAGVVHRDIKPENILLDFNGIIKYVDFGAARKIAKNGTripnlnkkngaepeveedadggkVHDMMGTPMYMAPESIt 1723
                  66778899*********************************************99999**************************************8 PP

                  ..TTSCBSHHHHHHHHHHHHHHHHHSS-STTTSSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTTHHHHHTSGGG CS
     Pkinase  170 ..keneyskkvDvWslGvilyelltgkppfsgekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRltaeellqhpyl 264 
                    ++++   + D+WslG++++e++tg+ p+++ ++    +++      ++++    + +lp+a+e+ +  + +l+++l +dpk+R ta ell +p++
  CCD26603.1 1724 gpGNTGKFGSDDIWSLGCVVLEMVTGRRPWANLDN---EWAI------MYHVAAGHTPQLPNADEVTPAGRAFLQRCLVQDPKSRATAVELLIDPWI 1811
                  66556666678********************3222...2333......3345566789*************************************97 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.9   0.0   6.1e-36   1.6e-32       5     255 ..    1533    1805 ..    1529    1808 .. 0.76

  Alignments for each domain:
  == domain 1  score: 112.9 bits;  conditional E-value: 6.1e-36
                   EEEEEESSEEEEEEEEETTTTSSEEEEEEEEE..STTSSHHHHHHH.HHHHHHHHTS-BTTB--EEEEEESSSSEEEEEE--TTEBHHHHHHHTCT CS
  Pkinase_Tyr    5 kklGeGafGkVvegtlkgekekkevkVavKtl..keeateeekeel.leeakimkklkhpnivkllgvctkeepllivteyvkgGdLlkfLrkkek 97  
                   + +G G+fG+V+++       ++ +  avK +  ++++t ++   l  ee+++++ l+hpniv+++gv ++++++ i +ey++gG+L + L++   
   CCD26603.1 1533 NFIGGGTFGTVFSAVNL----DNGEILAVKEIriQDSTTMKKIFPLiKEEMTVLEMLNHPNIVQYYGVEVHRDKVNIFMEYCEGGSLASLLEHG-- 1622
                   669***********999....788899***993333333343333315699****************************************998.. PP

                   TTSBHHHHHH.HHHHHHHHHHHHHHTTEEEST-SGGGEEEEETTEEEE-STTTHEETTTSSEE...............EETTSST.....SGGGGS CS
  Pkinase_Tyr   98 ekltlkdlls.falqvAkGmeyLeskklvHrdlaarNvLlsenkvvkisDfGLardiekddey...............vkkeeak.....lpvkWm 172 
                    +++ + +++ ++l++ +G++yL++  +vHrd+   N+Ll+ n ++k  DfG ar+i k+ +                ++++++k         +m
   CCD26603.1 1623 -RIEDEMVTQiYTLELLEGLAYLHQAGVVHRDIKPENILLDFNGIIKYVDFGAARKIAKNGTRipnlnkkngaepeveEDADGGKvhdmmGTPMYM 1717
                   .44444444316899******************************************7765544554322233332221111111111113567** PP

                   -HHHHHHSEEEHH...HHHHHHHHHHHHHHTTSSGTTTTSHHHH.HHHHHHTTE..ES-BBTTSBHHHHHHHHHHT-SSGGGS--HHHH CS
  Pkinase_Tyr  173 apEslkekkftsk...sDvWsfGvllwEiftlgespypglknee.vleklkegk..rlekpekcpeelyelmkkcweedpeeRptfsel 255 
                   apEs++    t k    D+Ws G ++ E++t g++p+++l+ne  ++ ++ +g+  +l++ ++++++   ++++c+ +dp++R+t  el
   CCD26603.1 1718 APESITGPGNTGKfgsDDIWSLGCVVLEMVT-GRRPWANLDNEWaIMYHVAAGHtpQLPNADEVTPAGRAFLQRCLVQDPKSRATAVEL 1805
                   *****9877655433259*************.********7765156666666522578888999999***************998776 PP

>> Kinase-like  Kinase-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.1e-08   2.8e-05     141     218 ..    1625    1704 ..    1612    1773 .. 0.82

  Alignments for each domain:
  == domain 1  score: 23.6 bits;  conditional E-value: 1.1e-08
  Kinase-like  141 letiarlllTlqlirlaanLqakglvhgkftvdnllldekgglmlggfta...LvragtkvvlsevekgfaPpEllgsrgg 218 
                   + ++  ++ Tl+l+   a+L++ g+vh +++++n+lld +g ++  +f+a   + + gt+ + + ++k  a pE++  + g
   CCD26603.1 1625 EDEMVTQIYTLELLEGLAYLHQAGVVHRDIKPENILLDFNGIIKYVDFGAarkIAKNGTRIP-NLNKKNGAEPEVEEDADG 1704
                   556778899************************************99987222556788888.888888888898877655 PP

>> Chordopox_A30L  Chordopoxvirus A30L protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     9e-06     0.023      22      58 ..     925     962 ..     919     971 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 9e-06
  Chordopox_A30L  22 Dsef.aatlsvikElisqINlkvleinKKsKKnsraie 58 
                     D+ef +++l +ik l +  Nlk+l+ nKKs K +++ e
      CCD26603.1 925 DPEFdGTVLEAIKYLFKLFNLKLLDANKKSFKTFKEPE 962
                     7788345689************************9988 PP

>> Kdo  Lipopolysaccharide kinase (Kdo/WaaP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     5e-05      0.13     116     179 ..    1626    1684 ..    1588    1691 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 5e-05
         Kdo  116 aeelkrallkavgrliaklhragvnHadlyaknillqqeeeeeaeiwliDldkarlrlradrwr 179 
                  +e +++    ++    a lh+agv H+d+ + nill+ ++     i  +D+  ar+ + ++  r
  CCD26603.1 1626 DEMVTQIYTLELLEGLAYLHQAGVVHRDIKPENILLDFNG----IIKYVDFGAARKIA-KNGTR 1684
                  455555555555556788*******************999....77888887766655.55555 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013      0.33     162     196 ..    1640    1675 ..    1588    1678 .. 0.68

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 0.00013
                  S...SS-EEEE-SS-SGGGEEEC..TTEEEEE---TT- CS
         APH  162 g...elptvllHgDlhpgNllvdpddgrvtGviDfeda 196 
                  g     +++++H+D++p N+l+d   + ++  +Df+ a
  CCD26603.1 1640 GlayLHQAGVVHRDIKPENILLD--FNGIIKYVDFGAA 1675
                  13335689***************..5555455677766 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.9   8.0         7   1.8e+04     218     281 ..     143     213 ..     132     296 .. 0.57
   2 ?   -4.1   0.1         2     5e+03     219     274 ..    1153    1187 ..    1119    1211 .. 0.47
   3 ?    9.4   0.0   0.00016       0.4     316     382 ..    1638    1718 ..    1633    1732 .. 0.59

  Alignments for each domain:
  == domain 1  score: -7.9 bits;  conditional E-value: 7
  Pkinase_fungal 218 i.aeiRkgldvtkaekfrskrkvvsssssqe........lsskaevklkksesskkvekrsvdssvstskrsr 281
                     + ++ R++l  ++++k ++ ++++s+s++ +        +  k +  + +++ss + +++++ + +sts r+r
      CCD26603.1 143 ThSSRRASLISSSNQKGKQVKQSQSQSQQLHqqlqqlspS--KLAALNSPKSSSANNNATTTTNPLSTSMRRR 213
                     3366666665555555444444444333333555554321..1111111222222222222222224444444 PP

  == domain 2  score: -4.1 bits;  conditional E-value: 2
  Pkinase_fungal  219 aeiRkgldvtka.ekfrskrkvvsssssqelsskaevklkksesskkvekrsvdssv 274 
                       ++R++ld +++ ++f+                        s+s+ ++e++++++++
      CCD26603.1 1153 YYVRNELDSNTKsKRFKGR----------------------SRSRPNMEANNINNNT 1187
                      3344444444442222222......................2222233333333332 PP

  == domain 3  score: 9.4 bits;  conditional E-value: 0.00016
  Pkinase_fungal  316 IkghrsLflkagiLHrDiSenNilit...........dskkegerkglLiDLDlakelsddssesga.....rertGTleFma 382 
                      ++g+  L+ +ag++HrDi  +Nil+              +k +++   +  L+     +  + e++a     ++ +GT+ +ma
      CCD26603.1 1638 LEGLAYLH-QAGVVHRDIKPENILLDfngiikyvdfgAARKIAKNGTRIPNLNKKNGAEP-EVEEDAdggkvHDMMGTPMYMA 1718
                      57888999.***************985555555555422222333333333333222221.2222112333456666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1836 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1427  (0.0795917); expected 358.6 (0.02)
Passed bias filter:                      406  (0.0226449); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.11u 0.27s 00:00:01.38 Elapsed: 00:00:00.48
# Mc/sec: 11486.57
//
Query:       CCD26604.1  [L=515]
Description: hypothetical protein NDAI_0I00350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-60  197.2  34.4    7.4e-10   39.3   0.1    9.0  8  WD40           WD domain, G-beta repeat
      8e-20   71.0   5.1      8e-05   22.9   0.1    5.3  6  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
    1.7e-09   38.0   0.0    3.1e-09   37.2   0.0    1.5  1  NLE            NLE (NUC135) domain
    3.5e-08   33.6   0.2    0.00033   20.6   0.0    3.3  2  eIF2A          Eukaryotic translation initiation factor eIF2A
    2.2e-05   23.3   3.4        3.9    6.0   0.0    5.1  6  Nup160         Nucleoporin Nup120/160
    0.00098   18.2   0.2        2.2    7.2   0.0    4.0  4  Ge1_WD40       WD40 region of Ge1, enhancer of mRNA-decapping
     0.0074   15.1   0.6        2.2    7.0   0.0    3.4  4  Nucleoporin_N  Nup133 N terminal like
     0.0078   15.6   0.5       0.82    8.9   0.1    2.4  2  Nbas_N         Neuroblastoma-amplified sequence, N terminal
  ------ inclusion threshold ------
      0.089   12.1   0.0         23    4.2   0.0    3.1  3  WD40_like      WD40-like domain


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.2   6.4e-06     0.013       8      38 .]     140     172 ..     133     172 .. 0.82
   2 !   39.3   0.1   3.7e-13   7.4e-10       3      37 ..     178     213 ..     176     214 .. 0.93
   3 !   27.2   0.0   2.4e-09   4.9e-06       7      38 .]     225     264 ..     218     264 .. 0.85
   4 !   28.3   1.4   1.1e-09   2.2e-06       2      38 .]     269     305 ..     268     305 .. 0.86
   5 !    7.7   0.4    0.0036       7.2       1      38 []     310     387 ..     310     387 .. 0.73
   6 !   36.0   0.0   4.1e-12   8.2e-09       2      38 .]     393     430 ..     392     430 .. 0.91
   7 !   34.0   0.6   1.8e-11   3.5e-08       2      38 .]     435     472 ..     434     472 .. 0.95
   8 !   26.5   0.2   4.1e-09   8.1e-06       7      37 ..     482     513 ..     476     514 .. 0.88

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 6.4e-06
                 ESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                  GH s + + af p+++  +++G  D+t riWd
  CCD26604.1 140 AGHgSTILCSAFAPNSSSrMVTGAGDNTARIWD 172
                 59*7779888888888887679955*******9 PP

  == domain 2  score: 39.3 bits;  conditional E-value: 3.7e-13
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 +  tltGH ++v +++++p+g  +a+Gs+D+t+r+W
  CCD26604.1 178 PKATLTGHtNWVLCVSWCPNGEVIATGSMDNTIRLW 213
                 6689****999************************* PP

  == domain 3  score: 27.2 bits;  conditional E-value: 2.4e-09
                 EESS.SSEEEEEEETTSSE.............EEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgaw.............lasGsdDgtvriWd 38 
                 l+GH +++tsl      aw             las+s+Dgt++iWd
  CCD26604.1 225 LRGHlKWITSL------AWepihlvkageqprLASASKDGTIKIWD 264
                 89*********......666666669999999*************9 PP

  == domain 4  score: 28.3 bits;  conditional E-value: 1.1e-09
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  cl+tl+GH +sv+++++   g +  sGs D+tvr Wd
  CCD26604.1 269 VCLYTLSGHtNSVSCIKWGGQGIL-YSGSHDKTVRAWD 305
                 69*******999****66555555.8**99*******9 PP

  == domain 5  score: 7.7 bits;  conditional E-value: 0.0036
                 TEEEEEEESS.SSEEEEEEETTSSE.......................................EEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgaw.......................................lasGsdDgtvriWd 38 
                 g+c+ +l+ H  +v++l+ s d a+                                       ++++sdD t  +W+
  CCD26604.1 310 GRCINVLKSHaHWVNHLSLSTDYALrvgpfdhtgveptspedardkalknyekvvkkngrveelMVTASDDFTMFLWN 387
                 689999999955699999777777766666666666666666667777777777777777788656788888888887 PP

  == domain 6  score: 36.0 bits;  conditional E-value: 4.1e-12
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++l+  tGH + v+++afspdg++++s+s D+++++Wd
  CCD26604.1 393 KPLGRMTGHqKLVNHVAFSPDGRYIVSASFDNSIKLWD 430
                 6788899**666****************99*******9 PP

  == domain 7  score: 34.0 bits;  conditional E-value: 1.8e-11
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 + + t++GH  sv+ +a+s d ++l+s+s+D t+++Wd
  CCD26604.1 435 KFISTFRGHvASVYQVAWSADCRLLVSCSKDTTLKVWD 472
                 6789*****999*************************9 PP

  == domain 8  score: 26.5 bits;  conditional E-value: 4.1e-09
                 EESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   7 ltGHss.vtslafspdgawlasGsdDgtvriW 37 
                 l GH++ v  +++s dg+ ++sG++D+ vriW
  CCD26604.1 482 LPGHKDeVFTVDWSVDGKRVCSGGKDKMVRIW 513
                 78**556************************* PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1     4e-08     8e-05      25      90 ..     166     238 ..     150     240 .. 0.88
   2 !   13.4   0.0   3.7e-05     0.074      52      90 ..     250     287 ..     241     289 .. 0.91
   3 ?   -2.7   0.0       3.7   7.4e+03      56      76 ..     295     316 ..     290     327 .. 0.49
   4 !   21.2   0.0   1.3e-07   0.00027      35      90 ..     399     453 ..     385     454 .. 0.91
   5 !   15.3   0.1   9.4e-06     0.019      39      91 ..     445     496 ..     441     497 .. 0.93
   6 !    7.5   0.1    0.0026       5.1      29      64 ..     470     512 ..     469     514 .. 0.82

  Alignments for each domain:
  == domain 1  score: 22.9 bits;  conditional E-value: 4e-08
  ANAPC4_WD40  25 ngqrvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  n  r+w+        + +++ + v +++W p+g+++a +  d+++rl + +sgk v     ++ k +t+l W+
   CCD26604.1 166 NTARIWDCdtqtpkaTLTGHTNWVLCVSWCPNGEVIATGSMDNTIRLWEGKSGKPVGDALRGHLKWITSLAWE 238
                  5678888877776665667888899*******************************9999999999****996 PP

  == domain 2  score: 13.4 bits;  conditional E-value: 3.7e-05
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                   La a +dg++++ d +   ++ +ls ++++ v+c++Wg
   CCD26604.1 250 RLASASKDGTIKIWDTSRRVCLYTLSGHTNS-VSCIKWG 287
                  69***********************999995.******7 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 3.7
  ANAPC4_WD40  56 aysdgevrlldaes.gkvvhsl 76 
                  + +d +vr  d++s g++++ l
   CCD26604.1 295 GSHDKTVRAWDMNSeGRCINVL 316
                  4445555555544313444444 PP

  == domain 4  score: 21.2 bits;  conditional E-value: 1.3e-07
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWg 90 
                  +++++ v+++a++pdg+ ++ a  d++++l d  +gk +++++ +  + v  + W+
   CCD26604.1 399 TGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFISTFRGHVAS-VYQVAWS 453
                  568899************************************999885.9999996 PP

  == domain 5  score: 15.3 bits;  conditional E-value: 9.4e-06
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                   +v ++aW+ d +lL+   +d+++++ d+ + k+   l+ ++++ v +++W++
   CCD26604.1 445 ASVYQVAWSADCRLLVSCSKDTTLKVWDVRTRKLSVDLPGHKDE-VFTVDWSV 496
                  57899************************************996.******86 PP

  == domain 6  score: 7.5 bits;  conditional E-value: 0.0026
  ANAPC4_WD40  29 vwtl.......eedkedsevrsLaWkpdgklLavaysdgevrl 64 
                  vw++       + ++++ ev  + W+ dgk  + + +d  vr+
   CCD26604.1 470 VWDVrtrklsvDLPGHKDEVFTVDWSVDGKRVCSGGKDKMVRI 512
                  555555555556678999*********************9998 PP

>> NLE  NLE (NUC135) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.6e-12   3.1e-09       1      53 [.      32      82 ..      32     105 .. 0.86

  Alignments for each domain:
  == domain 1  score: 37.2 bits;  conditional E-value: 1.6e-12
         NLE  1 vqvrFvtkdedeslavpgtplsvPasltrkqLselvnkLlk.eekpvpFdFlid 53
                v ++F++ d+ e++   g++l+vP+ +t+kqL+el+n+L + +++pvp++F  d
  CCD26604.1 32 VSIKFQALDSGETV---GGSLRVPGGITEKQLEELLNQLNGtADDPVPYTFSCD 82
                789****9866999...************************75578*****887 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0014       2.7      79     153 ..     162     239 ..     142     299 .. 0.50
   2 !   20.6   0.0   1.7e-07   0.00033     100     169 ..     402     470 ..     395     492 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0014
                 SSSSCEEEEEECSCEEEEEEEEES--...EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEE...E-TT--EEEE-T CS
       eIF2A  79 GkmpakvslfdlkvkviskleeqkrN...tiffspkgklvllaGfgnlaGeleiwdvkkkkkiaka...eaanatlvewsp 153
                 G  ++++ ++d + +  + + + + N   ++ ++p+g++++++ + n+   + +w+ k+ k +  a   + ++ t++ w+p
  CCD26604.1 162 GAGDNTARIWDCDTQTPKATLTGHTNwvlCVSWCPNGEVIATGSMDNT---IRLWEGKSGKPVGDAlrgHLKWITSLAWEP 239
                 445555555555433333333333332223445555555555555554...455544444433332111233344444444 PP

  == domain 2  score: 20.6 bits;  conditional E-value: 1.7e-07
                 EES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT--E..EEE-TTSSEEEEEE-TTT-SS CS
       eIF2A 100 eqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaanatl..vewspdgryvlTattaprlrv 169
                 ++  N + fsp g++++ a f n    +++wd  + k i++++   a++  v ws d r+++ ++    l+v
  CCD26604.1 402 QKLVNHVAFSPDGRYIVSASFDNS---IKLWDGRDGKFISTFRGHVASVyqVAWSADCRLLVSCSKDTTLKV 470
                 5668*******************8...***************98888753378********99886544444 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.19   3.8e+02     239     255 ..     165     181 ..     155     187 .. 0.87
   2 ?   -2.2   0.0      0.59   1.2e+03     231     252 ..     199     220 ..     190     222 .. 0.82
   3 !    6.0   0.0    0.0019       3.9     231     255 ..     249     273 ..     240     280 .. 0.85
   4 ?    3.5   0.0     0.011        22     223     249 ..     281     308 ..     277     318 .. 0.84
   5 ?    2.9   0.0     0.017        34     228     256 ..     411     440 ..     397     453 .. 0.83
   6 !    5.6   0.6    0.0026       5.2     229     252 ..     455     478 ..     443     489 .. 0.84

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.19
                 T-EEEEEETTTTEEEEE CS
      Nup160 239 dgkLrvWnlltgkclat 255
                 d++ r+W+ +t+++ at
  CCD26604.1 165 DNTARIWDCDTQTPKAT 181
                 99*********987666 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 0.59
                 TEEEEEETT-EEEEEETTTTEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkc 252
                  ++++ s d+++r+W  ++gk+
  CCD26604.1 199 EVIATGSMDNTIRLWEGKSGKP 220
                 5789999********8777765 PP

  == domain 3  score: 6.0 bits;  conditional E-value: 0.0019
                 TEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 231 tylfalsrdgkLrvWnlltgkclat 255
                   l+++s dg++++W+++   cl+t
  CCD26604.1 249 PRLASASKDGTIKIWDTSRRVCLYT 273
                 568999*****************98 PP

  == domain 4  score: 3.5 bits;  conditional E-value: 0.011
                 T......TTTEEEEEETT-EEEEEETTT CS
      Nup160 223 vavvei.gqtylfalsrdgkLrvWnllt 249
                 v++++  gq +l++ s d+++r+W+ ++
  CCD26604.1 281 VSCIKWgGQGILYSGSHDKTVRAWDMNS 308
                 67777799*****************976 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.017
                 ..TTTEEEEEETT-EEEEEETTTTEEEEEE CS
      Nup160 228 i.gqtylfalsrdgkLrvWnlltgkclati 256
                 + +  y++++s d+ +++W+ ++gk ++t+
  CCD26604.1 411 SpDGRYIVSASFDNSIKLWDGRDGKFISTF 440
                 34778******************9999984 PP

  == domain 6  score: 5.6 bits;  conditional E-value: 0.0026
                 TTTEEEEEETT-EEEEEETTTTEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkc 252
                 +  +l++ s d +L+vW+++t k+
  CCD26604.1 455 DCRLLVSCSKDTTLKVWDVRTRKL 478
                 55678999*************875 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.023        45     185     214 ..     183     213 ..     158     217 .. 0.83
   2 ?    1.8   0.1     0.049        97     262     284 ..     253     275 ..     246     286 .. 0.70
   3 !    7.2   0.0    0.0011       2.2     183     214 ..     397     429 ..     351     432 .. 0.83
   4 ?    0.4   0.0      0.12   2.5e+02     188     218 ..     445     475 ..     433     511 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.023
    Ge1_WD40 185 eehs.liveaafspdGtalatasedGevkff 214
                 + h+  + + ++ p+G ++at s+d +++++
  CCD26604.1 183 TGHTnWVLCVSWCPNGEVIATGSMDNTIRLW 213
                 455547899999****************998 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.049
    Ge1_WD40 262 gadnnselklWscelWtClqtik 284
                 +a+++  +k+W ++  +Cl t+ 
  CCD26604.1 253 SASKDGTIKIWDTSRRVCLYTLS 275
                 56666778888888888887775 PP

  == domain 3  score: 7.2 bits;  conditional E-value: 0.0011
    Ge1_WD40 183 kieehs.liveaafspdGtalatasedGevkff 214
                 +++ h  l+ + afspdG  +  as d  +k++
  CCD26604.1 397 RMTGHQkLVNHVAFSPDGRYIVSASFDNSIKLW 429
                 556666367789*******************98 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.12
    Ge1_WD40 188 sliveaafspdGtalatasedGevkffqvyl 218
                 + + + a+s+d   l  +s+d ++k + v  
  CCD26604.1 445 ASVYQVAWSADCRLLVSCSKDTTLKVWDVRT 475
                 4778888999999999999999999888865 PP

>> Nucleoporin_N  Nup133 N terminal like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.78   1.5e+03     139     159 ..     190     213 ..     177     214 .. 0.76
   2 ?    1.6   0.0     0.045        90     213     231 ..     241     266 ..     230     274 .. 0.75
   3 !    7.0   0.0    0.0011       2.2     211     250 ..     288     327 ..     270     354 .. 0.78
   4 ?    2.3   0.0     0.028        57     201     233 ..     444     476 ..     363     487 .. 0.75

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 0.78
                    EEEEETTTC-EEEEETTS...SEE CS
  Nucleoporin_N 139 qvinseptgriflagstg...rly 159
                     +++  p+g+++++gs +   rl+
     CCD26604.1 190 LCVSWCPNGEVIATGSMDntiRLW 213
                    57777899*********9666666 PP

  == domain 2  score: 1.6 bits;  conditional E-value: 0.045
                    T.......CEEEEEETTSEEEEEEEE CS
  Nucleoporin_N 213 r.......rilytlsskgvirvydls 231
                    +        +l ++s +g+i+++d+s
     CCD26604.1 241 HlvkageqPRLASASKDGTIKIWDTS 266
                    444444447899************98 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0011
                    CCTCEEEEEETTSEEEEEEEETTCE..E-EEEEEEEHHHHHH CS
  Nucleoporin_N 211 ssrrilytlsskgvirvydlsasng..esslksdidirqill 250
                      ++ily+ s ++++r++d++ s+g   + lks++++ ++l+
     CCD26604.1 288 G-QGILYSGSHDKTVRAWDMN-SEGrcINVLKSHAHWVNHLS 327
                    4.39*****************.55548888999999988887 PP

  == domain 4  score: 2.3 bits;  conditional E-value: 0.028
                    GG-EEEEEEECCTCEEEEEETTSEEEEEEEETT CS
  Nucleoporin_N 201 reeivqlridssrrilytlsskgvirvydlsas 233
                      ++ q++ +   r+l++ s + +++v+d+ ++
     CCD26604.1 444 VASVYQVAWSADCRLLVSCSKDTTLKVWDVRTR 476
                    444555666666699999999999999999854 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.01        21     216     257 ..     389     430 ..     357     442 .. 0.80
   2 !    8.9   0.1   0.00041      0.82      48      82 ..     449     483 ..     442     497 .. 0.86

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.01
      Nbas_N 216 llslklysrkaeekdgvfkmslspdgtllavihfsgklsiwd 257
                 l s k   r +  +  v ++++spdg  +    f  ++ +wd
  CCD26604.1 389 LKSTKPLGRMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWD 430
                 66778889999999***************************8 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00041
      Nbas_N  48 rvawshdctllayaestgtvrvfdlvgsellvisp 82 
                 +vaws dc ll  +    t++v+d+   +l v  p
  CCD26604.1 449 QVAWSADCRLLVSCSKDTTLKVWDVRTRKLSVDLP 483
                 79**********************99888877666 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.066   1.3e+02      12      65 ..     156     210 ..     151     221 .. 0.80
   2 ?    1.9   0.0     0.059   1.2e+02       6      65 ..     408     468 ..     404     482 .. 0.65
   3 ?    4.2   0.0     0.011        23       2      27 ..     488     513 ..     487     515 .] 0.92

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.066
   WD40_like  12 gslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGti 65 
                 +s ++ G+ d+++++ + ++++ +  +++ ++ v+ v    +  +i  +++D ti
  CCD26604.1 156 SSRMVTGAGDNTARIWDCDTQTPKATLTGHTNWVLCVSWCPNGeVIATGSMDNTI 210
                 5567789999999999999999999999999999999888665377777888877 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.059
   WD40_like   6 idiskkgslilyGgkddkctvlkleslesvsivesfedSvifvklldddlilv.vtlDGti 65 
                 + +s++g +i+  + d+ +++ + + ++ +s + +   Sv  v    d  +lv ++ D t+
  CCD26604.1 408 VAFSPDGRYIVSASFDNSIKLWDGRDGKFISTFRGHVASVYQVAWSADCRLLVsCSKDTTL 468
                 5567777777777777777777777777777777777777766666665444435666665 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.011
   WD40_like   2 eiYsidiskkgslilyGgkddkctvl 27 
                 e++++d s +g+ +  Ggkd+ +++ 
  CCD26604.1 488 EVFTVDWSVDGKRVCSGGKDKMVRIW 513
                 9********************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       487  (0.0271627); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 3602.78
//
Query:       CCD26605.1  [L=164]
Description: hypothetical protein NDAI_0I00360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-24   85.9   0.4    2.9e-24   85.2   0.4    1.4  1  Img2      Mitochondrial large subunit ribosomal protein (Img2


Domain annotation for each model (and alignments):
>> Img2  Mitochondrial large subunit ribosomal protein (Img2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.4   1.6e-28   2.9e-24       2      77 ..      83     162 ..      82     164 .] 0.94

  Alignments for each domain:
  == domain 1  score: 85.2 bits;  conditional E-value: 1.6e-28
        Img2   2 pYfvrRtrsgslPVYtdvkrggtkkltvirkieGDiaalredLrkalee....lvkvnevtgkieikGdrveevkkfLes 77 
                 +Yf+rR+++g+lPVYtd+k gg+k +t++rkieGDi +lr+dL++ l +     +++  +++ki+ikG++++++kk+L++
  CCD26605.1  83 TYFIRRSTTGNLPVYTDYKGGGNKIITEVRKIEGDIIQLRNDLQEKLPQinkkNWSIVMQSKKIIIKGNFSRDIKKVLSA 162
                 7***********************************************97665599999******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      499  (0.027832); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.25s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1186.12
//
Query:       CCD26606.1  [L=325]
Description: hypothetical protein NDAI_0I00370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-24   84.5   0.0    1.5e-23   83.8   0.0    1.3  1  Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans iso


Domain annotation for each model (and alignments):
>> Pro_isomerase  Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   8.2e-28   1.5e-23       9     156 ..      66     225 ..      59     227 .. 0.85

  Alignments for each domain:
  == domain 1  score: 83.8 bits;  conditional E-value: 8.2e-28
  Pro_isomerase   9 kGrivieLfadkaPktvenFlklvkeg...............fYdgttFhRvikgfmvqgGdptgktsageqe.kkggesiraipdEitsklkh.k 87 
                    +++++i+L+++ +Pktv+nF  l  +g               +Y+ t+F ++i++  +++G++  + s      +  g    + +dE+ ++lkh +
     CCD26606.1  66 LQEMAIDLYGTVVPKTVKNFEVLS-KGvkaslggkdniivplTYKRTIFSKIIPDAYMKAGEVLPGLS----PfSIYG---SNWADEN-FELKHdR 152
                    67899****************999.677899999999************************9766533....323444...4899***.8999978 PP

  Pro_isomerase  88 rGalamartgkepnsagsqFfItlkeap...hldgkytvFGkVveGm.dvvekiekvetde.erpkknvkivsa 156
                    +G l+ma++g +p+s+ s+F I+l+  +   +ldgk++vFG++++G+ ++++ ++ vet++   p +nv+++ a
     CCD26606.1 153 PGRLSMANKG-QPDSNDSDFLIVLNSETqqsELDGKHVVFGQITSGLkELLDDLQFVETNDqFMPLHNVTLITA 225
                    8********8.6***********98744456**************973689*******9997778888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.23s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2432.73
//
Query:       CCD26607.1  [L=503]
Description: hypothetical protein NDAI_0I00380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.2e-10   39.1   0.0    1.3e-09   38.1   0.0    1.5  1  Lipase_3       Lipase (class 3)
     0.0028   18.3   0.0     0.0044   17.6   0.0    1.3  1  Abhydrolase_6  Alpha/beta hydrolase family
      0.007   15.7   0.0      0.013   14.8   0.0    1.3  1  Hydrolase_4    Serine aminopeptidase, S33
  ------ inclusion threshold ------
      0.012   15.3   0.0      0.027   14.1   0.0    1.5  1  Abhydrolase_1  alpha/beta hydrolase fold
      0.027   14.4   0.0      0.052   13.5   0.0    1.4  1  UPF0227        Uncharacterised protein family (UPF0227)
      0.089   12.5   0.0       0.16   11.7   0.0    1.3  1  Abhydrolase_5  Alpha/beta hydrolase family
       0.12   12.1   0.0       0.38   10.4   0.0    1.8  2  PGAP1          PGAP1-like protein


Domain annotation for each model (and alignments):
>> Lipase_3  Lipase (class 3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   4.9e-13   1.3e-09      42      83 ..     334     388 ..     301     392 .. 0.80

  Alignments for each domain:
  == domain 1  score: 38.1 bits;  conditional E-value: 4.9e-13
                 HHH.............S-HHHHHHHHHHHHHHHTT-EEEEEEEETHHHHHHHHHH CS
    Lipase_3  42 aye.............eslreqvlkelkrllekypeysivvtGHSLGgalAlLaa 83 
                 +y+                +++v +  k++l++yp+++i+vtGHSLGgalA+L++
  CCD26607.1 334 SYTcdesclekelrrkDRYYNAVIDIYKDVLNQYPNAEIWVTGHSLGGALAALIG 388
                 444444556666666667899999999*************************976 PP

>> Abhydrolase_6  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.7e-06    0.0044      44     110 ..     350     420 ..     294     454 .. 0.74

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 1.7e-06
                    S--HHHCHHH.HHHHCCTT..TTSEEEEEETCHHHHHHHHHHCC..EE...EEES-.......----TTTS----T CS
  Abhydrolase_6  44 pldledladl.aalldelaagggpvvlvGHSlGGalalaaaplalvvg...vlldppp.....talpagllaaale 110
                    +  ++++ d+  ++l+  +    ++++ GHSlGGala++     + +g   v+ ++p+       l +++++ +++
     CCD26607.1 350 DRYYNAVIDIyKDVLNQYP--NAEIWVTGHSLGGALAAL---IGRTFGlpaVAFEAPGeylaaKRLHLPFPPGLPA 420
                    5567778899999999996..8888**************...5544455448888844444432222222222222 PP

>> Hydrolase_4  Serine aminopeptidase, S33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.9e-06     0.013      56      94 ..     350     388 ..     343     398 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 4.9e-06
  Hydrolase_4  56 ddyvdDlaafvekvkeehpelplfllGhSmGGliallyl 94 
                  d+y++ +  +++ v +++p++++ + GhS+GG++a+l++
   CCD26607.1 350 DRYYNAVIDIYKDVLNQYPNAEIWVTGHSLGGALAALIG 388
                  6788888899999**********************9876 PP

>> Abhydrolase_1  alpha/beta hydrolase fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     1e-05     0.027      52      89 ..     350     386 ..     333     394 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 1e-05
                    CHHSHHHHHHHHHHHHHHCTTSSEEEEEETHHHHHHHH CS
  Abhydrolase_1  52 ddygtasvaddldrildalgddkltlvGhSmGGmiala 89 
                    d+y +a v d+++ +l+++++ ++++ GhS+GG++a+ 
     CCD26607.1 350 DRYYNA-VIDIYKDVLNQYPNAEIWVTGHSLGGALAAL 386
                    778886.999999**********************987 PP

>> UPF0227  Uncharacterised protein family (UPF0227)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0     2e-05     0.052      46      87 ..     357     398 ..     337     405 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2e-05
     UPF0227  46 lkeleklvaelgddnillvGssLGGyyatrlgerfglrqvll 87 
                 +   + +++++ + +i + G sLGG +a+ +g  fgl +v +
  CCD26607.1 357 IDIYKDVLNQYPNAEIWVTGHSLGGALAALIGRTFGLPAVAF 398
                 445556667777777************************988 PP

>> Abhydrolase_5  Alpha/beta hydrolase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.3e-05      0.16      47      72 ..     361     385 ..     355     393 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 6.3e-05
  Abhydrolase_5  47 eeiikeapklekfvvgGhslGGvvas 72 
                    +++++++p+ e   v+GhslGG++a+
     CCD26607.1 361 KDVLNQYPNAE-IWVTGHSLGGALAA 385
                    7899****987.6689*******997 PP

>> PGAP1  PGAP1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   3.3e+03     160     173 ..     276     289 ..     263     335 .. 0.77
   2 ?   10.4   0.0   0.00015      0.38      64     106 ..     345     385 ..     324     391 .. 0.78

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 1.3
       PGAP1 160 klenvllvsitggi 173
                 +l+n++++s+ g  
  CCD26607.1 276 ELDNIVVISVKGTS 289
                 48999999999865 PP

  == domain 2  score: 10.4 bits;  conditional E-value: 0.00015
       PGAP1  64 tlldqaeylndaIkyIlslysssekeptsviliGHSmGGivar 106
                  l+++ +y n +I    ++   ++ ++ ++ + GHS+GG +a 
  CCD26607.1 345 ELRRKDRYYNAVIDIYKDVL--NQYPNAEIWVTGHSLGGALAA 385
                 56677777777776555555..5668999***********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       853  (0.0475766); expected 358.6 (0.02)
Passed bias filter:                      516  (0.0287802); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 4009.36
//
Query:       CCD26608.1  [L=1095]
Description: hypothetical protein NDAI_0I00390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-06   26.4   0.0    8.1e-05   22.8   0.0    2.5  2  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
  ------ inclusion threshold ------
       0.02   15.7   0.2        2.5    9.1   0.0    4.1  4  WD40         WD domain, G-beta repeat


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.12   1.1e+03      33      74 ..     158     198 ..     129     217 .. 0.74
   2 !   22.8   0.0   9.1e-09   8.1e-05       4      65 ..     265     326 ..     262     332 .. 0.92

  Alignments for each domain:
  == domain 1  score: 0.0 bits;  conditional E-value: 0.12
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvh 74 
                   e ++++ev+++ ++pd kl    + ++++++++  +g+ v+
   CCD26608.1 158 FEIETGREVKDVGFSPDSKLVGY-ITESTLEVFSTLTGRFVS 198
                  45688999********9997654.445677777777777765 PP

  == domain 2  score: 22.8 bits;  conditional E-value: 9.1e-09
  ANAPC4_WD40   4 cptmDLiAlatedgellvfRlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrll 65 
                   pt +Li l t+d++l++ Rlng ++ ++ ++ +++ ++++++ pd +  a + sd +  ++
   CCD26608.1 265 APTGNLIGLSTNDNSLILLRLNGFKILHIFKQLHEQPITKVSFTPDSRHVATVSSDCKTTVV 326
                  6999*************************99**********************999887665 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.93   8.4e+03      13      30 ..      14      31 ..       9      37 .. 0.77
   2 ?   -2.1   0.0      0.96   8.6e+03      13      25 ..     166     178 ..     162     187 .. 0.83
   3 ?    0.6   0.0      0.13   1.2e+03      11      34 ..     257     280 ..     248     282 .. 0.72
   4 ?    9.1   0.0   0.00028       2.5       4      32 ..     291     321 ..     288     325 .. 0.80

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 0.93
                EEEEEEETTSSEEEEEET CS
        WD40 13 vtslafspdgawlasGsd 30
                +++ +f  ++ +l++G+ 
  CCD26608.1 14 ICGAKFLNNSLLLVAGGH 31
                788889999999999973 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.96
                 EEEEEEETTSSEE CS
        WD40  13 vtslafspdgawl 25 
                 v ++ fspd++++
  CCD26608.1 166 VKDVGFSPDSKLV 178
                 67888*****985 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.13
                 SSEEEEEEETTSSEE.EEEETTSEE CS
        WD40  11 ssvtslafspdgawl.asGsdDgtv 34 
                 ssvts++  p g+++ +s   D+++
  CCD26608.1 257 SSVTSMDIAPTGNLIgLST-NDNSL 280
                 579***********74333.37665 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00028
                 EEEEE.SS.SSEEEEEEETTSSEEEEEETTS CS
        WD40   4 lrtlt.GH.ssvtslafspdgawlasGsdDg 32 
                 l++++  H +++t ++f pd++ +a+ s D+
  CCD26608.1 291 LHIFKqLHeQPITKVSFTPDSRHVATVSSDC 321
                 67776568889*************9876586 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1095 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       951  (0.0530426); expected 358.6 (0.02)
Passed bias filter:                      267  (0.0148921); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.26s 00:00:01.08 Elapsed: 00:00:00.44
# Mc/sec: 7469.99
//
Query:       CCD26609.1  [L=481]
Description: hypothetical protein NDAI_0I00400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.9e-13   50.0  17.6      2e-13   49.9  10.8    2.4  2  zf-C3HC4_2     Zinc finger, C3HC4 type (RING finger)
    4.7e-11   42.4  11.2    4.7e-11   42.4  11.2    2.4  2  zf-C3HC4       Zinc finger, C3HC4 type (RING finger)
    3.5e-10   39.4   0.0    9.9e-10   37.9   0.0    1.9  1  SAP            SAP domain
    1.8e-09   37.3  11.3    1.1e-08   34.8   7.0    2.3  2  zf-C3HC4_3     Zinc finger, C3HC4 type (RING finger)
    1.1e-08   35.2  13.3    4.8e-08   33.2  10.0    2.3  2  zf-RING_2      Ring finger domain
    1.4e-08   34.6  10.2    1.4e-08   34.6  10.2    2.5  2  zf-RING_UBOX   RING-type zinc-finger
    3.6e-08   33.4  14.7    8.1e-08   32.3  11.2    2.5  2  zf-C3HC4_4     zinc finger of C3HC4-type, RING
    4.8e-07   29.6   4.4    4.8e-07   29.6   4.4    1.8  2  zf-RING_6      zf-RING of BARD1-type protein
    8.3e-07   28.9  15.6    4.7e-06   26.5  10.0    2.4  2  zf-RING_5      zinc-RING finger domain
    1.4e-06   28.1  12.2    2.8e-06   27.1   8.0    2.3  2  Prok-RING_4    Prokaryotic RING finger family 4
    2.5e-05   24.5   5.3    2.5e-05   24.5   5.3    2.5  2  zf-rbx1        RING-H2 zinc finger domain
     0.0019   18.3   0.1     0.0082   16.3   0.0    2.1  2  U-box          U-box domain
     0.0055   16.8   4.9     0.0055   16.8   4.9    2.1  2  zf-RING_10     zinc RING finger of MSL2
  ------ inclusion threshold ------
      0.045   13.6   6.3      0.085   12.7   1.9    2.4  2  zf-RING_4      RING/Ubox like zinc-binding domain
      0.045   13.9   0.5      0.095   12.8   0.5    1.5  1  RelE           RelE toxin of RelE / RelB toxin-antitoxin syst
      0.058   13.2  10.0       0.13   12.1   5.5    2.5  2  zf-Nse         Zinc-finger of the MIZ type in Nse subunit
       0.24   11.3  10.6        1.5    8.7   0.1    3.5  3  Rad50_zn_hook  Rad50 zinc hook motif
       0.74    9.9   3.6        0.7   10.0   1.2    2.0  2  zf-ANAPC11     Anaphase-promoting complex subunit 11 RING-H2 


Domain annotation for each model (and alignments):
>> zf-C3HC4_2  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9  10.8     2e-16     2e-13       1      40 []      27      65 ..      27      65 .. 0.98
   2 ?    3.8   0.5     0.051        51      30      40 .]     185     196 ..     182     196 .. 0.82

  Alignments for each domain:
  == domain 1  score: 49.9 bits;  conditional E-value: 2e-16
  zf-C3HC4_2  1 kCpiCldmlkdpsvvtpCgHvfCqkCilrsLeekneCPlC 40
                +C+iC d+lk+p v+tpCgH+fC+ Ci+++L+++++CPlC
  CCD26609.1 27 RCHICKDFLKTP-VLTPCGHTFCSVCIREYLQSNSKCPLC 65
                6***********.*************************** PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.051
  zf-C3HC4_2  30 sLeekn.eCPlC 40 
                  L+ek+ +CP+C
  CCD26609.1 185 NLKEKQaQCPVC 196
                 6788888***** PP

>> zf-C3HC4  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4  11.2   4.7e-14   4.7e-11       1      41 []      28      65 ..      28      65 .. 0.98
   2 ?    1.8   0.7      0.22   2.2e+02      30      41 .]     186     196 ..     178     196 .. 0.78

  Alignments for each domain:
  == domain 1  score: 42.4 bits;  conditional E-value: 4.7e-14
                -TTT-S--SS-E.E-TTS--B-CHHHHHHHHCTSSB--TTT CS
    zf-C3HC4  1 CpiCleeakepnelleCkHsfCskCirkilksrkkvkCPlC 41
                C+iC++ +k+p+ l++C+H+fCs Cir++l+  ++ kCPlC
  CCD26609.1 28 CHICKDFLKTPV-LTPCGHTFCSVCIREYLQ--SNSKCPLC 65
                ************.******************..8889**** PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.22
                 HHCTSSB--TTT CS
    zf-C3HC4  30 lksrkkvkCPlC 41 
                 lk +k+ +CP+C
  CCD26609.1 186 LK-EKQAQCPVC 196
                 44.78899**** PP

>> SAP  SAP domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0     1e-12   9.9e-10       1      34 [.     294     327 ..     294     328 .. 0.96

  Alignments for each domain:
  == domain 1  score: 37.9 bits;  conditional E-value: 1e-12
                 HTT--HHHHHHHHHHTT--TTS-HHHHHHHHHHH CS
         SAP   1 lskltVaeLKeeLkkrGLptsGkKaeLieRLkey 34 
                 +s++t ++ K++L+++GL+t+G+K+ +i+R+ +y
  CCD26609.1 294 FSNMTTTKIKQKLSSLGLSTTGTKQNMIARYNHY 327
                 79*****************************988 PP

>> zf-C3HC4_3  Zinc finger, C3HC4 type (RING finger)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   7.0   1.1e-11   1.1e-08       4      44 ..      27      66 ..      25      72 .. 0.93
   2 ?    4.5   0.1     0.032        32      32      44 ..     185     197 ..     183     200 .. 0.83

  Alignments for each domain:
  == domain 1  score: 34.8 bits;  conditional E-value: 1.1e-11
                B-TTTSSSBS-EEETTEEEEEE-HHHHHHHHHTT-B-TTT- CS
  zf-C3HC4_3  4 eCviClerprnvvllpCgHlvlCeeCaekllkrkkkCpiCr 44
                 C iC++  ++ vl pCgH+ +C+ C +++l+++ kCp+C 
  CCD26609.1 27 RCHICKDFLKTPVLTPCGHT-FCSVCIREYLQSNSKCPLCL 66
                6*******************.*******************6 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.032
                 HHHHTT-B-TTT- CS
  zf-C3HC4_3  32 kllkrkkkCpiCr 44 
                 +l++++++Cp+C 
  CCD26609.1 185 NLKEKQAQCPVCE 197
                 677799******6 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2  10.0   4.8e-11   4.8e-08       2      43 ..      27      65 ..      26      66 .. 0.84
   2 ?    2.8   0.1      0.15   1.5e+02      35      43 ..     188     196 ..     180     204 .. 0.76

  Alignments for each domain:
  == domain 1  score: 33.2 bits;  conditional E-value: 4.8e-11
   zf-RING_2  2 eCpICleelssadsvlllpCgHvfhreClerwlrssstCPlC 43
                 C IC +++ +  +++l+pCgH+f+  C++++l+s+s+CPlC
  CCD26609.1 27 RCHIC-KDFLK--TPVLTPCGHTFCSVCIREYLQSNSKCPLC 65
                6****.67754..344459*********************** PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.15
   zf-RING_2  35 rssstCPlC 43 
                 +++ +CP+C
  CCD26609.1 188 EKQAQCPVC 196
                 344459999 PP

>> zf-RING_UBOX  RING-type zinc-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6  10.2   1.4e-11   1.4e-08       1      39 []      28      63 ..      28      63 .. 0.94
   2 ?    0.7   0.1      0.54   5.4e+02       1      11 [.     193     201 ..     193     224 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.6 bits;  conditional E-value: 1.4e-11
  zf-RING_UBOX  1 CpIClelftdPlv.lpCGHtFCreClwelskslegafkCP 39
                  C IC++ +++P v +pCGHtFC+ C+   ++ l+ + kCP
    CCD26609.1 28 CHICKDFLKTP-VlTPCGHTFCSVCI---REYLQSNSKCP 63
                  ***********.736***********...99********9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.54
  zf-RING_UBOX   1 CpIClelftdP 11 
                   Cp+C   f  P
    CCD26609.1 193 CPVCEGFF--P 201
                   9***9888..5 PP

>> zf-C3HC4_4  zinc finger of C3HC4-type, RING
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3  11.2   8.1e-11   8.1e-08       1      42 []      28      65 ..      28      65 .. 0.95
   2 ?    1.4   0.1      0.36   3.5e+02       1       7 [.     193     199 ..     183     202 .. 0.70

  Alignments for each domain:
  == domain 1  score: 32.3 bits;  conditional E-value: 8.1e-11
  zf-C3HC4_4  1 CPiCldYLekPvsleCGhsfClsCisslqkepdgeqllCplC 42
                C iC d+L+ Pv  +CGh+fC  Ci ++ ++++     CplC
  CCD26609.1 28 CHICKDFLKTPVLTPCGHTFCSVCIREYLQSNS----KCPLC 65
                9****************************9994....49999 PP

  == domain 2  score: 1.4 bits;  conditional E-value: 0.36
  zf-C3HC4_4   1 CPiCldY 7  
                 CP+C  +
  CCD26609.1 193 CPVCEGF 199
                 6666665 PP

>> zf-RING_6  zf-RING of BARD1-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   4.4   4.8e-10   4.8e-07       2      47 ..      20      66 ..      19      69 .. 0.89
   2 ?   -2.6   0.1       5.3   5.3e+03      42      48 ..     192     198 ..     190     206 .. 0.72

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4.8e-10
   zf-RING_6  2 arlekllrcsrctdilrepvclggcehifcsncisdcfg..sgcpvcy 47
                a+l+ llrc  c d l+ pv l  c h fcs ci + +   s cp+c 
  CCD26609.1 20 AQLDFLLRCHICKDFLKTPV-LTPCGHTFCSVCIREYLQsnSKCPLCL 66
                8999***************9.899************9862267***95 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.3
   zf-RING_6  42 gcpvcyt 48 
                  cpvc  
  CCD26609.1 192 QCPVCEG 198
                 6999964 PP

>> zf-RING_5  zinc-RING finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5  10.0   4.7e-09   4.7e-06       1      42 [.      27      65 ..      27      66 .. 0.96
   2 ?    5.4   0.3     0.018        18      32      43 ..     186     197 ..     176     198 .. 0.78

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 4.7e-09
   zf-RING_5  1 hCnkCfeklskeekfyltsCgHifCekClkkllekeavCpiC 42
                +C +C + l   + ++lt+CgH+fC+ C++++l+++ +Cp+C
  CCD26609.1 27 RCHICKDFL---KTPVLTPCGHTFCSVCIREYLQSNSKCPLC 65
                699999999...99**************************** PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.018
   zf-RING_5  32 llekeavCpiCr 43 
                 l+ek+a+Cp+C+
  CCD26609.1 186 LKEKQAQCPVCE 197
                 33889******6 PP

>> Prok-RING_4  Prokaryotic RING finger family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   8.0   2.8e-09   2.8e-06       1      40 [.      28      69 ..      28      74 .. 0.88
   2 ?    2.6   0.1      0.13   1.3e+02      28      37 ..     188     197 ..     183     200 .. 0.77

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 2.8e-09
  Prok-RING_4  1 CvlCgeqekkailepCgHlvCkeCfdsk.dls.sCPlCqrri 40
                 C +C+   k+++l pCgH +C  C  +  +++  CPlC  ++
   CCD26609.1 28 CHICKDFLKTPVLTPCGHTFCSVCIREYlQSNsKCPLCLLEL 69
                 99***********************998654469****8776 PP

  == domain 2  score: 2.6 bits;  conditional E-value: 0.13
  Prok-RING_4  28 kdlssCPlCq 37 
                  ++ ++CP+C+
   CCD26609.1 188 EKQAQCPVCE 197
                  45568****7 PP

>> zf-rbx1  RING-H2 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   5.3   2.5e-08   2.5e-05      26      54 ..      37      65 ..      22      66 .. 0.82
   2 ?    1.8   0.3      0.29   2.9e+02      46      55 .]     188     197 ..     183     197 .. 0.75

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 2.5e-08
     zf-rbx1 26 pvvlGeCgHaFHlhCiskWlktrkvCPlc 54
                ++vl  CgH+F   Ci+++l+++++CPlc
  CCD26609.1 37 TPVLTPCGHTFCSVCIREYLQSNSKCPLC 65
                47778************************ PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.29
     zf-rbx1  46 ktrkvCPlcr 55 
                 +++++CP+c+
  CCD26609.1 188 EKQAQCPVCE 197
                 35899****5 PP

>> U-box  U-box domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   8.2e-06    0.0082       5      60 ..      26      80 ..      23      90 .. 0.89
   2 ?   -2.7   0.0       7.2   7.1e+03      38      52 ..     174     189 ..     154     195 .. 0.53

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 8.2e-06
                GB-TTT-SB-SSEEEETTTEEEEHHHHHHHHTT.SSB-TTT-SB--GGGSEE-HHH CS
       U-box  5 fldpitlelmkdPvilpsgvvvdrstiekhllsrdktdPftrepltqdqlipnlel 60
                +++ i    +k Pv++p g+++    i ++l+s ++ +P+    l +++l ++  +
  CCD26609.1 26 LRCHICKDFLKTPVLTPCGHTFCSVCIREYLQS-NSKCPLCLLELRESMLRSEFLV 80
                5799*****************************.*************999887655 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 7.2
                 .SSB-TTT.-SB--GG CS
       U-box  38 rdktdPft.repltqd 52 
                 ++ + P t ++ l+++
  CCD26609.1 174 QSMFKPTTkNKNLKEK 189
                 3456666644444444 PP

>> zf-RING_10  zinc RING finger of MSL2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   4.9   5.5e-06    0.0055       1      44 [.      26      66 ..      26      94 .. 0.82
   2 ?   -1.9   0.1       3.9   3.9e+03      37      46 ..     190     199 ..     180     204 .. 0.62

  Alignments for each domain:
  == domain 1  score: 16.8 bits;  conditional E-value: 5.5e-06
  zf-RING_10  1 lsCvvCckLLvdPlepkekeCqHyvCrlCvgkkkklkpsCsqCk 44
                l C +C   L+ P+      C+H  C +C+++  + +++C+ C 
  CCD26609.1 26 LRCHICKDFLKTPVLT---PCGHTFCSVCIREYLQSNSKCPLCL 66
                67*********99764...7***********************6 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 3.9
  zf-RING_10  37 kpsCsqCkdy 46 
                 +++C+ C+ +
  CCD26609.1 190 QAQCPVCEGF 199
                 4567777654 PP

>> zf-RING_4  RING/Ubox like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   1.9   8.6e-05     0.085      19      43 ..      42      65 ..      37      68 .. 0.92
   2 ?    2.3   0.1      0.15   1.5e+02      33      43 ..     186     196 ..     182     200 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 8.6e-05
   zf-RING_4 19 eCgyqiClfCyhrileeeegrCPaC 43
                +Cg+ +C  C ++ l+ ++ +CP C
  CCD26609.1 42 PCGHTFCSVCIREYLQ-SNSKCPLC 65
                7***********9996.7******9 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.15
   zf-RING_4  33 leeeegrCPaC 43 
                 l+e++++CP C
  CCD26609.1 186 LKEKQAQCPVC 196
                 45789****** PP

>> RelE  RelE toxin of RelE / RelB toxin-antitoxin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   9.5e-05     0.095      24     110 ..     354     444 ..     343     450 .. 0.84

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 9.5e-05
        RelE  24 leaveevekGlidadlGggvi.KkRvarkgeGksggyRtlvlakk...geraffvygfaKsdkaniskkelkalkklakellalseeqlek 110
                 ++a+++v + + +++ Ggg+i K  v+r+g+ k   y+ l++  k    er  ++ +++ + k  i++  +k +kk ak+++a +e+ l++
  CCD26609.1 354 WDAAHNVPASSSNGNNGGGIIsKMMVNRNGNSKENHYKKLLADFKndkFERKTWIRLYKQEFKLLIKEAKEKMIKKDAKKMTAEKEAALTT 444
                 56888888888888888887736689************999855413346789****************************9999998875 PP

>> zf-Nse  Zinc-finger of the MIZ type in Nse subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   5.5   0.00013      0.13      11      56 ..      25      65 ..      20      66 .. 0.90
   2 ?    2.9   0.1     0.099        98      38      57 .]     172     197 ..     169     197 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00013
                XSB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC- CS
      zf-Nse 11 slkCPltlqpfeePvtskkCpHvFEreaIlelikrkktvkCPvagC 56
                 l+C + +  +++Pv  + C H+F    I e++  +   kCP+  C
  CCD26609.1 25 LLRCHICKDFLKTPVL-TPCGHTFCSVCIREYL--QSNSKCPL--C 65
                589************8.79**************..77889**9..6 PP

  == domain 2  score: 2.9 bits;  conditional E-value: 0.099
                 HHHHHC........TTTS-EE-SCCC-S CS
      zf-Nse  38 aIleli........krkktvkCPvagCs 57 
                 +I++++         ++k+++CPv  C+
  CCD26609.1 172 SIQSMFkpttknknLKEKQAQCPV--CE 197
                 56666666666655467899****..85 PP

>> Rad50_zn_hook  Rad50 zinc hook motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.2    0.0017       1.7      14      37 ..      54      78 ..      52      80 .. 0.78
   2 ?    8.7   0.1    0.0015       1.5      13      27 ..     184     198 ..     180     202 .. 0.82
   3 ?   -3.0   0.4       6.7   6.7e+03      39      45 ..     420     426 ..     414     441 .. 0.56

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.0017
                   HHTT-SEE-TTT--EE-HHH.HHHH CS
  Rad50_zn_hook 14 elkeakgcCPlCgReldeeh.rseL 37
                   e  +++ +CPlC  el e   rse+
     CCD26609.1 54 EYLQSNSKCPLCLLELRESMlRSEF 78
                   6667777*****9999888777776 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0015
                    HHHTT-SEE-TTT-- CS
  Rad50_zn_hook  13 eelkeakgcCPlCgR 27 
                    ++lke+ + CP+C+ 
     CCD26609.1 184 KNLKEKQAQCPVCEG 198
                    68999999*****96 PP

  == domain 3  score: -3.0 bits;  conditional E-value: 6.7
                    HHHHHHH CS
  Rad50_zn_hook  39 kelqskl 45 
                    ke ++k+
     CCD26609.1 420 KEAKEKM 426
                    4444443 PP

>> zf-ANAPC11  Anaphase-promoting complex subunit 11 RING-H2 finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   1.2    0.0007       0.7      48      78 ..      39      66 ..      15      73 .. 0.81
   2 ?   -1.1   0.0         2     2e+03      68      81 ..     187     200 ..     177     203 .. 0.75

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.0007
                EEBTTS-EEEHHHHHHHHHHHSTSSB-TTTS CS
  zf-ANAPC11 48 vlGkckhnfhlhcilkwletetskglcpmcr 78
                vl  c h+f   ci ++l++   +++cp+c 
  CCD26609.1 39 VLTPCGHTFCSVCIREYLQS---NSKCPLCL 66
                6788**************75...56788885 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 2
                 HSTSSB-TTTSSB- CS
  zf-ANAPC11  68 etskglcpmcrqtf 81 
                 ++ + +cp+c   f
  CCD26609.1 187 KEKQAQCPVCEGFF 200
                 55688999997666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1132  (0.0631379); expected 358.6 (0.02)
Passed bias filter:                      495  (0.0276089); expected 358.6 (0.02)
Passed Vit filter:                        64  (0.00356964); expected 17.9 (0.001)
Passed Fwd filter:                        19  (0.00105974); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.43
# Mc/sec: 3375.55
//
Query:       CCD26610.1  [L=658]
Description: hypothetical protein NDAI_0I00410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-33  112.3   2.5    2.3e-32  111.1   0.3    2.8  3  Forkhead  Forkhead domain


Domain annotation for each model (and alignments):
>> Forkhead  Forkhead domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.3   1.3e-36   2.3e-32       1      84 [.     122     203 ..     122     206 .. 0.94
   2 ?   -0.9   0.0      0.11     2e+03      46      68 ..     249     271 ..     234     289 .. 0.82
   3 ?   -3.8   0.0       0.9   1.6e+04      49      66 ..     441     458 ..     439     462 .. 0.82

  Alignments for each domain:
  == domain 1  score: 111.1 bits;  conditional E-value: 1.3e-36
                 ------HHHHHHHHHHT-TTT-B-HHHHHHHHHCC-HHHHCC.-CCHHHHHHHHHHHHC--EEETT.-TTSS--EEE--TTHHH CS
    Forkhead   1 skPpysYaaLIaqAiksspekkltLseIyefieenfpyyrtaakkgWqnSirhnLslnkcFekvpreeeegkgslwtidpesee 84 
                 skPpysYa LI+ Ai++s++ +ltLs+Iy++i++ fp+y+ + +++WqnSirhnLsln++F+k++++  +gkg++w+++pes  
  CCD26610.1 122 SKPPYSYALLIVLAILQSESSRLTLSQIYAWITDYFPFYKLT-EASWQNSIRHNLSLNEAFIKTEKSA-DGKGHFWEVKPESVL 203
                 6****************************************5.9*********************966.5**********9865 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.11
                 CHHHHHHHHHHHHC--EEETT.- CS
    Forkhead  46 gWqnSirhnLslnkcFekvpree 68 
                 +  n i   + +nk F+ +++++
  CCD26610.1 249 DTDNIINNTIEVNKLFKTIEKST 271
                 557889999999****9999854 PP

  == domain 3  score: -3.8 bits;  conditional E-value: 0.9
                 HHHHHHHHHHC--EEETT CS
    Forkhead  49 nSirhnLslnkcFekvpr 66 
                 nS r   s+n+ Fe  p+
  CCD26610.1 441 NSKRYTCSFNSNFELSPK 458
                 777889999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1075  (0.0599587); expected 358.6 (0.02)
Passed bias filter:                      417  (0.0232584); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.27s 00:00:00.88 Elapsed: 00:00:00.43
# Mc/sec: 4616.35
//
Query:       CCD26611.1  [L=157]
Description: hypothetical protein NDAI_0I00420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.7e-64  213.9   9.4    8.8e-64  213.7   9.4    1.0  1  G10       G10 protein


Domain annotation for each model (and alignments):
>> G10  G10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.7   9.4   4.9e-68   8.8e-64       1     146 []       1     155 [.       1     155 [. 0.95

  Alignments for each domain:
  == domain 1  score: 213.7 bits;  conditional E-value: 4.9e-68
         G10   1 mpkirtkkkkkppegfekiedtleeleaklreaeke..skeskkkeeslWkiarinhersryvyelyykrkaiskelydyllkekyadaeLiakWkkaG 97 
                 mp+irtk++++ppegf kie+tle++e++l+e +k+  sk ++k++e+lWki++inhersry+y+l+y+rkais+elyd+llkekyad+ LiakWkk+G
  CCD26611.1   1 MPRIRTKRTRPPPEGFAKIEPTLEDFEERLKEINKQkdSKLQTKSNENLWKIMQINHERSRYIYKLFYSRKAISRELYDWLLKEKYADKFLIAKWKKKG 99 
                 8*******************************885433888999******************************************************* PP

         G10  98 YekLcclrciqtkeanegstciCRvPkakle.......eekkfvecvkcGCrgcas 146
                 YekLccl+ciq++e+n ++tciCRvP+a+le        + +f++cv+cGCrgcas
  CCD26611.1 100 YEKLCCLKCIQSDETNSNKTCICRVPRAQLEhdaesknMSVTFQQCVHCGCRGCAS 155
                 ******************************99988776667889**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1811  (0.10101); expected 358.6 (0.02)
Passed bias filter:                      573  (0.0319594); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.22s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 1229.17
//
Query:       CCD26612.1  [L=621]
Description: hypothetical protein NDAI_0I00430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   4.1e-107  357.5  11.6   6.2e-107  356.9  11.6    1.3  1  Ytp1      Protein of unknown function (Ytp1)
    2.4e-28   98.0   5.5    1.3e-27   95.7   5.5    2.3  1  DUF2427   Domain of unknown function (DUF2427)
  ------ inclusion threshold ------
       0.14   11.9   5.9       0.11   12.4   1.7    2.9  2  LapA_dom  Lipopolysaccharide assembly protein A domain


Domain annotation for each model (and alignments):
>> Ytp1  Protein of unknown function (Ytp1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.9  11.6    1e-110  6.2e-107       3     276 ..     306     598 ..     304     599 .. 0.94

  Alignments for each domain:
  == domain 1  score: 356.9 bits;  conditional E-value: 1e-110
        Ytp1   3 fvqvltgvvvllglgrgeevfnllAHfikGgvFflyGlltlarylGafaelGwaWnkkpk.ksk......sekrivsaefveslliflYGitnvFlEhl 94 
                 ++++ +g+++ + +g+g +v+nllAH+ikGgvFfl+G+l+l ry+G  +++GwaWnk    +++       +++++++e +es+lif+YGitn+FlEhl
  CCD26612.1 306 LTYMGIGFAIGNLFGKGIRVYNLLAHWIKGGVFFLLGILSLSRYMGLGSKYGWAWNKILFfENNdplpmiFSHGVITMEGMESFLIFFYGITNIFLEHL 404
                 68899**************************************************99988666689999766799************************ PP

        Ytp1  95 agkggewsakdlqHvsiavlfiggGllGlllesklvrkllekaveeaak............eaeekak.....vslnplPalvilltGilmsaHaQase 176
                 ag+gg+w++kdlqHvsia+++ig+Gl+Gll+e kl ++++++a ++                           +s+np+P+l+i++tGilms+HaQ s+
  CCD26612.1 405 AGAGGAWTPKDLQHVSIAFIYIGSGLCGLLVEYKLKDWRYKTACDNIIMqdmqddpntlgkI-----VaatpgFSPNPFPTLTIFWTGILMSQHAQISM 498
                 ******************************************99998777776666654432.....034556************************** PP

        Ytp1 177 lstkiHkqwGllLlaaavaRlitylllllkppssvlpsrpptellasflLiagglvFmesteetvealeeegldamfllnvtvgltallmawvllllal 275
                 +st iH+qwG+lL++++++Rl+t+l+l+++p++ ++ s p+tel++sf+Li+gg+vFmest+++vea+e++gl+ mf++n++vg+t+l+mawv+l+ ++
  CCD26612.1 499 TSTIIHTQWGYLLSYGSIFRLFTFLILYFNPTKLTSLSYPFTELITSFCLICGGIVFMESTDQVVEAFEYRGLTPMFTFNLSVGVTTLIMAWVMLVSMW 597
                 ***********************************************************************************************9988 PP

        Ytp1 276 k 276
                 +
  CCD26612.1 598 Q 598
                 6 PP

>> DUF2427  Domain of unknown function (DUF2427)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   5.5   2.1e-31   1.3e-27       1     102 [.      56     162 ..      56     164 .. 0.92

  Alignments for each domain:
  == domain 1  score: 95.7 bits;  conditional E-value: 2.1e-31
     DUF2427   1 eyntttyfttdephksalwvHiilmtlalvvvyPvalvLslaksrwylpvqivnlvlavlglllghiyk.....gstPelypnniyaklswillillav 94 
                 +yntttyftt  + + al++Hi++++l +++ yP++l+L ++ks+wylp++++nl++++ +ll+ +i++     ++ P++ypnniy kl wil+i ++v
  CCD26612.1  56 NYNTTTYFTTCMGKRFALKYHITTLLLIIIITYPACLILENVKSKWYLPCLTLNLITTLSSLLAILIFHisfkgKNDPNWYPNNIYPKLCWILFIWIIV 154
                 69************************************************************99999862222244588******************** PP

     DUF2427  95 qvvlavll 102
                 ++++a+l 
  CCD26612.1 155 HYISAILM 162
                 *****985 PP

>> LapA_dom  Lipopolysaccharide assembly protein A domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.7   1.8e-05      0.11       8      37 ..     290     319 ..     289     325 .. 0.92
   2 ?   -0.8   0.1      0.22   1.3e+03      36      49 ..     586     599 ..     575     613 .. 0.52

  Alignments for each domain:
  == domain 1  score: 12.4 bits;  conditional E-value: 1.8e-05
    LapA_dom   8 vnflfaqvelpLsllllvafgiGallgwll 37 
                 v+++f ++++pL l ll  +giG+ +g l+
  CCD26612.1 290 VKIIFYTLNIPLFLYLLTYMGIGFAIGNLF 319
                 67899999******************9887 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.22
    LapA_dom  36 llslwsylrlrrel 49 
                 l+++w +l   +++
  CCD26612.1 586 LIMAWVMLVSMWQN 599
                 33444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1025  (0.0571699); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 4389.33
//
Query:       CCD26613.1  [L=128]
Description: hypothetical protein NDAI_0I00440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-10   38.3   0.1    4.7e-05   23.2   0.1    2.5  3  TPR_2       Tetratricopeptide repeat
    7.5e-10   38.2   0.4    0.00037   20.2   0.3    2.4  2  TPR_1       Tetratricopeptide repeat
    3.7e-07   29.8   0.2     0.0066   16.6   0.0    2.5  2  TPR_8       Tetratricopeptide repeat
    6.9e-06   25.6   0.3    1.7e-05   24.4   0.3    1.7  2  TPR_11      TPR repeat
    4.4e-05   23.6   0.1    0.00023   21.3   0.0    2.1  2  TPR_17      Tetratricopeptide repeat
     0.0014   19.1   0.0     0.0036   17.8   0.0    1.7  2  TPR_19      Tetratricopeptide repeat
     0.0031   18.1   0.0     0.0052   17.4   0.0    1.3  1  TPR_16      Tetratricopeptide repeat
      0.006   16.5   0.0       0.13   12.3   0.0    2.3  2  TPR_7       Tetratricopeptide repeat
     0.0069   17.0   0.0        0.5   11.1   0.0    2.4  2  TPR_6       Tetratricopeptide repeat
     0.0073   16.6   0.0        4.8    7.6   0.0    2.3  2  TPR_12      Tetratricopeptide repeat
  ------ inclusion threshold ------
      0.017   15.1   0.3      0.029   14.4   0.3    1.4  1  TPR_3       Tetratricopeptide repeat
      0.026   14.6   0.1       0.15   12.1   0.0    2.0  2  Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
      0.052   14.4   0.0        1.2   10.2   0.0    2.4  2  TPR_14      Tetratricopeptide repeat
       0.14   12.6   1.8        7.5    7.0   0.0    2.9  3  DUF1771     Domain of unknown function (DUF1771)


Domain annotation for each model (and alignments):
>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   3.6e-08   4.7e-05       5      34 .]       7      36 ..       4      36 .. 0.93
   2 !   12.5   0.0   9.6e-05      0.12       2      30 ..      38      66 ..      37      69 .. 0.92
   3 ?   -2.8   0.0       7.7   9.8e+03      19      25 ..      87      93 ..      84      98 .. 0.48

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 3.6e-08
       TPR_2  5 ynlGlayyklgdyeeAleafekAleldPnn 34
                 + G+  +++gdy++A  +++++++l+P+n
  CCD26613.1  7 KQEGNTFFQKGDYAQANGYYDQCIKLEPTN 36
                5789************************98 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 9.6e-05
       TPR_2  2 ealynlGlayyklgdyeeAleafekAlel 30
                 ++ n +++++k+g++  A+e +++ l++
  CCD26613.1 38 IGYSNKAMSLIKQGNHGLAVETCQEGLKY 66
                6799*********************9996 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 7.7
       TPR_2 19 eAleafe 25
                 A++a+ 
  CCD26613.1 87 LAKRACH 93
                3444443 PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   2.9e-07   0.00037       6      34 .]       8      36 ..       6      36 .. 0.93
   2 !   15.7   0.0   7.3e-06    0.0094       3      29 ..      39      65 ..      37      66 .. 0.93

  Alignments for each domain:
  == domain 1  score: 20.2 bits;  conditional E-value: 2.9e-07
                HHHHHHHHTT-HHHHHHHHHHHHHHSTTH CS
       TPR_1  6 nlGnayfklgkydeAleyyekALelnPnn 34
                + Gn++f++g+y +A  yy+++++l+P+n
  CCD26613.1  8 QEGNTFFQKGDYAQANGYYDQCIKLEPTN 36
                66*************************98 PP

  == domain 2  score: 15.7 bits;  conditional E-value: 7.3e-06
                HHHHHHHHHHHTT-HHHHHHHHHHHHH CS
       TPR_1  3 alynlGnayfklgkydeAleyyekALe 29
                 + n+++ + k+g++  A+e +++ L+
  CCD26613.1 39 GYSNKAMSLIKQGNHGLAVETCQEGLK 65
                79**********************997 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.1e-06    0.0066       8      34 .]      10      36 ..       8      36 .. 0.94
   2 !   10.9   0.0   0.00033      0.43       4      30 ..      40      66 ..      39      69 .. 0.92

  Alignments for each domain:
  == domain 1  score: 16.6 bits;  conditional E-value: 5.1e-06
                HHHHHHTT-HHHHHHHHHHHHHHHHH. CS
       TPR_8  8 gsiylklgdyeeAkeyyekaleldpdn 34
                g++ +++gdy +A  yy ++++l+p+n
  CCD26613.1 10 GNTFFQKGDYAQANGYYDQCIKLEPTN 36
                8999*********************86 PP

  == domain 2  score: 10.9 bits;  conditional E-value: 0.00033
                HHHHHHHHHHTT-HHHHHHHHHHHHHH CS
       TPR_8  4 yynlgsiylklgdyeeAkeyyekalel 30
                y n+++ ++k+g++  A+e++++ l++
  CCD26613.1 40 YSNKAMSLIKQGNHGLAVETCQEGLKY 66
                789*******************99986 PP

>> TPR_11  TPR repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.3   1.4e-08   1.7e-05       1      42 []      10      51 ..      10      51 .. 0.94
   2 ?   -0.1   0.0      0.59   7.6e+02       4      25 ..      47      68 ..      45      70 .. 0.82

  Alignments for each domain:
  == domain 1  score: 24.4 bits;  conditional E-value: 1.4e-08
      TPR_11  1 GdayyeqGkyeeAieaYkkAlkldPdnaeayynLGlayykqG 42
                G+ ++++G+y +A   Y + +kl P+n+  y+n +  + kqG
  CCD26613.1 10 GNTFFQKGDYAQANGYYDQCIKLEPTNPIGYSNKAMSLIKQG 51
                9********************************988777776 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.59
      TPR_11  4 yyeqGkyeeAieaYkkAlkldP 25
                + +qG+   A+e  ++ lk+++
  CCD26613.1 47 LIKQGNHGLAVETCQEGLKYTS 68
                5789999999999888888876 PP

>> TPR_17  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0         2   2.6e+03      20      32 ..      10      22 ..      10      22 .. 0.83
   2 !   21.3   0.0   1.8e-07   0.00023       1      33 [.      25      57 ..      25      58 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 2
      TPR_17 20 AelllknGdlmtA 32
                ++++ ++Gd+++A
  CCD26613.1 10 GNTFFQKGDYAQA 22
                67888999*9998 PP

  == domain 2  score: 21.3 bits;  conditional E-value: 1.8e-07
      TPR_17  1 lylkaleldPnnadaynnLAelllknGdlmtAr 33
                +y ++++l+P+n+  y n+A  l k+G+++ A+
  CCD26613.1 25 YYDQCIKLEPTNPIGYSNKAMSLIKQGNHGLAV 57
                69**************************99986 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   2.8e-06    0.0036       2      56 ..      14      68 ..      13      81 .. 0.89
   2 ?   -1.8   0.0       3.6   4.6e+03      51      64 ..     115     128 .]     114     128 .] 0.75

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 2.8e-06
      TPR_19  2 laegdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedp 56
                ++ gdya+A  ++ q ++ +p n+    + A  l+++g+   A +++++ ++ + 
  CCD26613.1 14 FQKGDYAQANGYYDQCIKLEPTNPIGYSNKAMSLIKQGNHGLAVETCQEGLKYTS 68
                689*******************************************999887765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 3.6
      TPR_19  51 lpeedpddaryasL 64 
                 + e d+  a+yasL
  CCD26613.1 115 ISEVDQLPAQYASL 128
                 66778888999987 PP

>> TPR_16  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0     4e-06    0.0052       3      59 ..       9      62 ..       8      70 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 4e-06
      TPR_16  3 laraalragdyddAaaaleaalkrdpssPdaaeAllllgdaalrqgrlaeAaalyra 59
                +++ +++ gdy++A  ++++ +k+    P ++  + +++ ++ +qg++ +A++ +++
  CCD26613.1  9 EGNTFFQKGDYAQANGYYDQCIKLE---PTNPIGYSNKAMSLIKQGNHGLAVETCQE 62
                6899*********************...99999******************998887 PP

>> TPR_7  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0    0.0001      0.13       6      33 ..      10      35 ..      10      38 .. 0.82
   2 ?    1.8   0.0      0.24   3.1e+02       4      30 ..      42      66 ..      40      72 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 0.0001
       TPR_7  6 arlysrlGdyeeAielyeqsLaltkdpe 33
                ++++++ Gdy++A ++y q   +  +p+
  CCD26613.1 10 GNTFFQKGDYAQANGYYDQ--CIKLEPT 35
                799****************..5555554 PP

  == domain 2  score: 1.8 bits;  conditional E-value: 0.24
       TPR_7  4 nLarlysrlGdyeeAielyeqsLaltk 30
                n a    ++G++  A+e +++  +l +
  CCD26613.1 42 NKAMSLIKQGNHGLAVETCQE--GLKY 66
                56666779999999****999..8776 PP

>> TPR_6  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00039       0.5       8      32 ..      11      35 ..       8      36 .. 0.86
   2 ?    3.4   0.0      0.11   1.4e+02       7      24 ..      44      61 ..      41      62 .. 0.88

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 0.00039
                HHHHHHHHHHHHHHHHHHHHHH-TT CS
       TPR_6  8 lsyrklgdtdkAlealerlikeYPd 32
                  +++ gd+++A  +++++ik  P+
  CCD26613.1 11 NTFFQKGDYAQANGYYDQCIKLEPT 35
                5678878**************9886 PP

  == domain 2  score: 3.4 bits;  conditional E-value: 0.11
                HHHHHHHHHHHHHHHHHH CS
       TPR_6  7 alsyrklgdtdkAleale 24
                a+s++k+g++  A+e+ +
  CCD26613.1 44 AMSLIKQGNHGLAVETCQ 61
                9************99877 PP

>> TPR_12  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0037       4.8      50      73 ..       8      31 ..       4      33 .. 0.74
   2 !    6.9   0.0     0.006       7.7       6      30 ..      40      64 ..      37      77 .. 0.86

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0037
      TPR_12 50 nLgrlyralgryeeAlelleeala 73
                  g ++++ g+y++A  ++ ++++
  CCD26613.1  8 QEGNTFFQKGDYAQANGYYDQCIK 31
                567788888888888888888765 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.006
      TPR_12  6 lnnlaavlrrlgrydeAlellekal 30
                ++n a+ l ++g++  A e +++ l
  CCD26613.1 40 YSNKAMSLIKQGNHGLAVETCQEGL 64
                7899***************999866 PP

>> TPR_3  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.3   2.3e-05     0.029      10      34 ..      12      34 ..       4      36 .. 0.82

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 2.3e-05
                HHHHTT-HHHHHHH..HHHHHHH-T CS
       TPR_3 10 efynkkkyqeArelfsYallaildk 34
                +f++k++y +A ++++  +  +l++
  CCD26613.1 12 TFFQKGDYAQANGYYD--QCIKLEP 34
                8*************77..7766665 PP

>> Fis1_TPR_C  Fis1 C-terminal tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00012      0.15      15      34 ..      17      36 ..      14      37 .. 0.94
   2 ?   -0.7   0.0       1.2   1.5e+03      11      28 ..      47      64 ..      43      67 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.1 bits;  conditional E-value: 0.00012
                T-HHHHHHHHHHHHHHTTS- CS
  Fis1_TPR_C 15 geYseArryvdalLeiEPen 34
                g+Y +A  y d+++++EP n
  CCD26613.1 17 GDYAQANGYYDQCIKLEPTN 36
                89****************99 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 1.2
                HHHHT-HHHHHHHHHHHH CS
  Fis1_TPR_C 11 hyklgeYseArryvdalL 28
                 +k+g++  A + ++  L
  CCD26613.1 47 LIKQGNHGLAVETCQEGL 64
                579999999999998655 PP

>> TPR_14  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00091       1.2       8      35 ..      10      37 ..       3      45 .. 0.87
   2 ?    1.7   0.0      0.48   6.1e+02      11      29 ..      47      65 ..      43      78 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.00091
      TPR_14  8 aeallalGdpdeAiallrralalaPdda 35
                +  +++ Gd+++A  +++++++l P+++
  CCD26613.1 10 GNTFFQKGDYAQANGYYDQCIKLEPTNP 37
                77899********************997 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.48
      TPR_14 11 llalGdpdeAiallrrala 29
                l  +G++  A++ +++ l+
  CCD26613.1 47 LIKQGNHGLAVETCQEGLK 65
                7789**********99987 PP

>> DUF1771  Domain of unknown function (DUF1771)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.19   2.5e+02      20      40 ..       8      28 ..       3      32 .. 0.78
   2 ?    7.0   0.0    0.0059       7.5      18      46 ..      40      68 ..      38      76 .. 0.88
   3 ?    1.6   0.3       0.3   3.8e+02      19      33 ..      85      99 ..      69     107 .. 0.67

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.19
     DUF1771 20 ekAaeAyrrGdgaaAkelseq 40
                ++    +++Gd a+A+ + +q
  CCD26613.1  8 QEGNTFFQKGDYAQANGYYDQ 28
                555667999**9999988765 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.0059
     DUF1771 18 lfekAaeAyrrGdgaaAkelseqGkehge 46
                +++kA    ++G+++ A e  ++G +++ 
  CCD26613.1 40 YSNKAMSLIKQGNHGLAVETCQEGLKYTS 68
                68999999****************99986 PP

  == domain 3  score: 1.6 bits;  conditional E-value: 0.3
     DUF1771 19 fekAaeAyrrGdgaa 33
                +e A++A ++G++++
  CCD26613.1 85 LELAKRACHQGQKHS 99
                566777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1027  (0.0572815); expected 358.6 (0.02)
Passed bias filter:                      607  (0.0338558); expected 358.6 (0.02)
Passed Vit filter:                        62  (0.00345808); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.41u 0.27s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 902.19
//
Query:       CCD26614.1  [L=278]
Description: hypothetical protein NDAI_0I00450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.2e-32  109.8   0.1    9.7e-32  109.4   0.1    1.2  1  UPF0029   Uncharacterized protein family UPF0029
    7.2e-09   36.0   1.0    1.5e-08   34.9   1.0    1.6  1  RWD       RWD domain
  ------ inclusion threshold ------
       0.13   11.9   0.1       0.24   11.1   0.1    1.5  1  UQ_con    Ubiquitin-conjugating enzyme


Domain annotation for each model (and alignments):
>> UPF0029  Uncharacterized protein family UPF0029
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.4   0.1   1.6e-35   9.7e-32       1     104 [.     156     266 ..     156     267 .. 0.93

  Alignments for each domain:
  == domain 1  score: 109.4 bits;  conditional E-value: 1.6e-35
                 TTEEEEEEEEE-SSHHHHHHHHHHH--..TT..SSEEEEEE....EE.........TTEE-TTSSTSHHHHHHHHHHTTB-SEEEEEEEE--SS--HHH CS
     UPF0029   1 kkSrFiavlaaveseeevkaileelkkenkk..athniyAyrlrqkvek.....vnedsdddgEpaAGkkllelLekeklenvlvvvtRwfGGikLGpg 92 
                 + S+Fia++a+v+se+++   l++lk ++k   a+h ++A+r+++ +++     + +dsdddgE+aAG+++l+l++ ++++nv+vvv+RwfGG+++Gp+
  CCD26614.1 156 RGSTFIAFAAKVDSEDDAFMKLQQLKMDHKLqrANHVMSAWRIKSMNDDnnteiIYQDSDDDGETAAGSRMLHLITIMDVWNVIVVVARWFGGVHIGPS 254
                 68***********************99998668********99999877566666666***************************************** PP

                 HHHHHHHHHHHH CS
     UPF0029  93 rlraiseaarea 104
                 r+++i+++area
  CCD26614.1 255 RFKHINSTAREA 266
                 **********98 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   1.0   2.6e-12   1.5e-08       3     112 ..       8     111 ..       6     115 .. 0.84

  Alignments for each domain:
  == domain 1  score: 34.9 bits;  conditional E-value: 2.6e-12
                 HHHHHHHHHHHSTTTCCCCHT--EE--S-EEEEEEECECCCC....TT-CEEEEEEEEE-SSTT.SS--...EEEEEECC.....SS-HHHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx...xxxxxxxx.....xxxxxxxxxxxxxx RF
         RWD   3 qeqEleaLesIypdefevienenysikleikikldededeedsefeekkkpslkleiklpeeYP.eeaP...iislsste.....nlpkeqvksleekl 92 
                   +El+++e+Iypd +++  +e       i+ik+   e              ++l+i++p +YP +e+P   +is+s ++     n++ +++k le   
  CCD26614.1   8 LIEELDTIEAIYPDLLTKRIDESGL----IQIKVPQHEY-------------FSLQISFPTHYPsKEPPhllEISISKKDipsnvNIELYDLKYLEFLF 89 
                 679*************766656666....5555555544.............99**********777779888888888899999999*********** PP

                 HHHHHHT..TTS--CHHHHHHH CS
                 xxxxxxx..xxxxxxxxxxxxx RF
         RWD  93 eelaeen..lgepvifalidwl 112
                 +e++++   +g +++f++ ++l
  CCD26614.1  90 QEVLDSVhhPGSVCLFDFLTEL 111
                 *****9999********99987 PP

>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   3.9e-05      0.24      44      64 ..      40      61 ..      33     110 .. 0.80

  Alignments for each domain:
  == domain 1  score: 11.1 bits;  conditional E-value: 3.9e-05
                TEEEEEEEE--TTTTT.S--EE CS
      UQ_con 44 ggvFklelefpedYPl.kpPkv 64
                 ++F l+++fp++YP  +pP++
  CCD26614.1 40 HEYFSLQISFPTHYPSkEPPHL 61
                679************9455543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       407  (0.0227007); expected 358.6 (0.02)
Passed bias filter:                      310  (0.0172904); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.25s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1939.52
//
Query:       CCD26615.1  [L=917]
Description: hypothetical protein NDAI_0I00460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-40  135.9  15.9    2.4e-09   37.7   0.2   12.3 12  WD40         WD domain, G-beta repeat
    1.4e-29  102.2   0.2     0.0003   21.0   0.0    9.3 10  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    7.7e-23   80.9   0.0    1.2e-22   80.2   0.0    1.3  1  Utp12        Dip2/Utp12 Family
    6.3e-09   36.0   5.3    0.00018   21.5   0.1    5.9  6  eIF2A        Eukaryotic translation initiation factor eIF2A
    9.5e-09   35.0   3.6       0.13   11.5   0.1    5.1  5  WD40_like    WD40-like domain
    3.4e-06   26.3   2.7       0.28   10.1   0.1    5.4  6  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
     0.0028   17.0   0.4        3.3    7.0   0.0    3.7  3  Nbas_N       Neuroblastoma-amplified sequence, N terminal
  ------ inclusion threshold ------
      0.037   12.9   0.1        5.1    5.9   0.2    2.4  2  PALB2_WD40   Partner and localizer of BRCA2 WD40 domain
        7.9    6.9   6.0         15    6.0   6.0    1.4  1  Nop25        Nucleolar protein 12 (25kDa)


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0       0.1   2.1e+02      10      34 ..      92     119 ..      84     123 .. 0.66
   2 !   19.2   0.3   8.3e-07    0.0016       8      38 .]     143     174 ..     136     174 .. 0.90
   3 ?    2.5   0.0      0.16   3.2e+02       6      37 ..     186     218 ..     183     219 .. 0.86
   4 ?    2.7   0.0      0.13   2.6e+02      13      37 ..     259     283 ..     247     284 .. 0.84
   5 ?    2.9   0.0      0.11   2.3e+02       6      29 ..     293     317 ..     288     325 .. 0.82
   6 !   23.9   0.1   2.7e-08   5.4e-05       8      38 .]     338     369 ..     330     369 .. 0.87
   7 !   25.3   0.1     1e-08     2e-05       3      38 .]     375     411 ..     373     411 .. 0.95
   8 !    9.6   0.0   0.00091       1.8       3      37 ..     417     454 ..     415     455 .. 0.83
   9 !   37.7   0.2   1.2e-12   2.4e-09       1      38 []     459     497 ..     459     497 .. 0.96
  10 ?    0.0   0.0      0.94   1.9e+03      11      35 ..     512     536 ..     503     539 .. 0.79
  11 ?    3.1   0.0     0.098     2e+02      14      38 .]     577     601 ..     566     601 .. 0.89
  12 ?    1.7   0.0      0.27   5.4e+02      13      29 ..     677     693 ..     660     699 .. 0.81

  Alignments for each domain:
  == domain 1  score: 3.0 bits;  conditional E-value: 0.1
                 S.SS...EEEEEEETTSSEEEEEETTSEE CS
        WD40  10 H.ss...vtslafspdgawlasGsdDgtv 34 
                 H ++    + ++fsp+g ++a ++  + +
  CCD26615.1  92 HfNFrerCYQVKFSPNGELFALAT-GRFI 119
                 544456678899*******75334.5555 PP

  == domain 2  score: 19.2 bits;  conditional E-value: 8.3e-07
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  GH +++ sl +s+d+++++s s+D t r+W+
  CCD26615.1 143 AGHfQDILSLTWSQDSRFIISTSKDLTARLWS 174
                 499888*************************5 PP

  == domain 3  score: 2.5 bits;  conditional E-value: 0.16
                 EEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40   6 tltGH.ssvtslafspdgawlasGsdDgtvriW 37 
                 t+ GH + v +  fs+d+  + + ++Dg +  W
  CCD26615.1 186 TFAGHrDYVMGAFFSDDQEKIYTVGKDGALFTW 218
                 789**888*9999********99999*988666 PP

  == domain 4  score: 2.7 bits;  conditional E-value: 0.13
                 EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvriW 37 
                 v ++ f++ ++ l+ G  +g  r++
  CCD26615.1 259 VKCVTFHHKSSILIVGFTNGEFRLY 283
                 99***********99*779999987 PP

  == domain 5  score: 2.9 bits;  conditional E-value: 0.11
                 EEE.SSSSEEEEEEETTSSEEEEEE CS
        WD40   6 tlt.GHssvtslafspdgawlasGs 29 
                  l+ G+++v+ + +++ g wla Gs
  CCD26615.1 293 QLSmGQNPVNTVTVNSTGEWLAFGS 317
                 45558899*************8665 PP

  == domain 6  score: 23.9 bits;  conditional E-value: 2.7e-08
                 ESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  GH +s +sl +spdg+ ++++ dDg++++Wd
  CCD26615.1 338 QGHfDSTNSLTYSPDGSRVVTAADDGKIKVWD 369
                 4997779***************99*******9 PP

  == domain 7  score: 25.3 bits;  conditional E-value: 1e-08
                 EEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   3 clrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 cl t+t H ssvt ++f + g+ l+s+s Dgtvr Wd
  CCD26615.1 375 CLATFTEHtSSVTQVQFAKKGQVLFSSSLDGTVRAWD 411
                 99******999*************************9 PP

  == domain 8  score: 9.6 bits;  conditional E-value: 0.00091
                 EEEEEESSSSE..EEEEEETTSSEEEEEE.TTSEEEEE CS
        WD40   3 clrtltGHssv..tslafspdgawlasGs.dDgtvriW 37 
                 + rt+t+   +  ++la++p+g  +++Gs d   +++W
  CCD26615.1 417 NFRTFTAAERIqfNCLAVDPSGEVVCAGSiDSFDIHVW 454
                 66788877567779**************9889999999 PP

  == domain 9  score: 37.7 bits;  conditional E-value: 1.2e-12
                 TEEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   1 gqclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 gq+l tl+GH ++v++l+fs++++ las+s+D+tvriW+
  CCD26615.1 459 GQLLDTLSGHeGPVSCLSFSQENSVLASASWDKTVRIWS 497
                 68999*****999*************************5 PP

  == domain 10  score: 0.0 bits;  conditional E-value: 0.94
                 SSEEEEEEETTSSEEEEEETTSEEE CS
        WD40  11 ssvtslafspdgawlasGsdDgtvr 35 
                 s+v +l++ pdg+ +a ++ +g + 
  CCD26615.1 512 SDVLALSVRPDGKQIAVSTLKGQIS 536
                 5799999*******99887777775 PP

  == domain 11  score: 3.1 bits;  conditional E-value: 0.098
                 EEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  14 tslafspdgawlasGsdDgtvriWd 38 
                 ts+ +s dg  +++G+ ++++ ++d
  CCD26615.1 577 TSIHYSFDGLAIIAGGNNNSICLYD 601
                 7899999999999**********98 PP

  == domain 12  score: 1.7 bits;  conditional E-value: 0.27
                 EEEEEEETTSSEEEEEE CS
        WD40  13 vtslafspdgawlasGs 29 
                 vts++fsp  + +a++s
  CCD26615.1 677 VTSVQFSPTANAFAAAS 693
                 9********99998877 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0028       5.6      27      81 ..      45      98 ..      33     107 .. 0.82
   2 ?    5.2   0.0     0.013        26      35      71 ..     143     179 ..     102     192 .. 0.77
   3 !   16.4   0.0   4.2e-06    0.0084      36      87 ..     254     304 ..     230     309 .. 0.80
   4 !   18.7   0.0   8.1e-07    0.0016      33      91 ..     336     393 ..     305     394 .. 0.83
   5 !    8.2   0.0    0.0016       3.1      35      81 ..     380     426 ..     375     433 .. 0.82
   6 !   10.3   0.0   0.00033      0.66      36      91 ..     424     479 ..     403     480 .. 0.86
   7 !    8.0   0.0    0.0017       3.4      30      67 ..     454     498 ..     450     510 .. 0.83
   8 !   21.0   0.0   1.5e-07    0.0003      28      81 ..     494     554 ..     479     560 .. 0.84
   9 !    8.8   0.0     0.001         2      31      81 ..     566     616 ..     559     625 .. 0.88
  10 ?   -1.6   0.0       1.7   3.5e+03      36      60 ..     672     696 ..     666     703 .. 0.81

  Alignments for each domain:
  == domain 1  score: 7.3 bits;  conditional E-value: 0.0028
  ANAPC4_WD40 27 qrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81
                 ++ +t+ e ++ +++  +  +++ +lL  + +dg+  l + ++++v+h+++  + 
   CCD26615.1 45 NQSFTF-EYEHRKNIATFDLNKQATLLLSVDEDGRAILTNFKTKTVLHHFNFRER 98
                 555666.67889999999********************************98765 PP

  == domain 2  score: 5.2 bits;  conditional E-value: 0.013
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgk 71 
                  +++ + + sL W++d +++    +d + rl +++s +
   CCD26615.1 143 AGHFQDILSLTWSQDSRFIISTSKDLTARLWSINSDE 179
                  45667899*********************99998764 PP

  == domain 3  score: 16.4 bits;  conditional E-value: 4.2e-06
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtcl 87 
                  +++ +v+++ ++++ ++L v++ +ge rl+++ s +++++ls++++  v+++
   CCD26615.1 254 ANQAKVKCVTFHHKSSILIVGFTNGEFRLYEMPSFTLLQQLSMGQNP-VNTV 304
                  6899**************************************99985.6655 PP

  == domain 4  score: 18.7 bits;  conditional E-value: 8.1e-07
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                  +++++  + +sL ++pdg+  + a +dg++++ d+ sg ++ +++ ++++ vt +++++
   CCD26615.1 336 KQQGHFDSTNSLTYSPDGSRVVTAADDGKIKVWDVVSGFCLATFTEHTSS-VTQVQFAK 393
                  4566667789**********************************999985.99999875 PP

  == domain 5  score: 8.2 bits;  conditional E-value: 0.0016
  ANAPC4_WD40  35 dkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  +++ s+v+++++ ++g++L  +  dg+vr  d    +  +++++++ 
   CCD26615.1 380 TEHTSSVTQVQFAKKGQVLFSSSLDGTVRAWDLIRYRNFRTFTAAER 426
                  578899***********************999887777777776665 PP

  == domain 6  score: 10.3 bits;  conditional E-value: 0.00033
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdg.evrlldaesgkvvhslsvksekavtclgWge 91 
                  +e  + ++La  p+g++ + +  d+  +++ ++++g+++ +ls ++   v+cl++++
   CCD26615.1 424 AERIQFNCLAVDPSGEVVCAGSIDSfDIHVWSVQTGQLLDTLSGHEGP-VSCLSFSQ 479
                  666777899**************9999****************99995.****9975 PP

  == domain 7  score: 8.0 bits;  conditional E-value: 0.0017
  ANAPC4_WD40  30 wtl.......eedkedsevrsLaWkpdgklLavaysdgevrllda 67 
                  w++       + +++++ v++L++++++++La a  d +vr+ ++
   CCD26615.1 454 WSVqtgqlldTLSGHEGPVSCLSFSQENSVLASASWDKTVRIWSI 498
                  555555555555788999***********************9886 PP

  == domain 8  score: 21.0 bits;  conditional E-value: 1.5e-07
  ANAPC4_WD40  28 rvwtl.......eedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  r+w++       e  +  s v +L+ +pdgk +av++ +g+++++d+esg+ v ++++ ++
   CCD26615.1 494 RIWSIfgrsqqvEPFEVYSDVLALSVRPDGKQIAVSTLKGQISMIDIESGNQVGNIDCRRD 554
                  5666666655555556778999**********************************99987 PP

  == domain 9  score: 8.8 bits;  conditional E-value: 0.001
  ANAPC4_WD40  31 tleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvkse 81 
                  t +++++++  +s++++ dg  +  + +++++ l+d+ ++ +++ + v+++
   CCD26615.1 566 TSKNSERSKCFTSIHYSFDGLAIIAGGNNNSICLYDVPNEVLLKRFIVSKN 616
                  55678889999****************************999999988765 PP

  == domain 10  score: -1.6 bits;  conditional E-value: 1.7
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdg 60 
                  k++ +v+s++++p  + +a a  +g
   CCD26615.1 672 KPEVRVTSVQFSPTANAFAAASTEG 696
                  5677899999999999999988777 PP

>> Utp12  Dip2/Utp12 Family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.2   0.0   6.2e-26   1.2e-22       1     106 [.     742     846 ..     742     847 .. 0.96

  Alignments for each domain:
  == domain 1  score: 80.2 bits;  conditional E-value: 6.2e-26
                 HHHHHHH.HHHSS-TTTHHHHHHCS-CTCHHHHHHHHHHHH.HTTTTHHHHHHHHHHHHHHHHHHHHHSH..HHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       Utp12   1 ndeelleevlekippsdirltvlrLpssyvlkLLeflaerlaeksphlelllrwlkallrvHgsylvasps.dlvpaLrslqkslrerlktlskllgln 98 
                 n+++l+++v+e ip s+++l++ +Lp+ y++ +L+f+ + ++ +s+h+e+ l w+k+ll++Hg+y+ ++++ ++ +a+rs+q+ + + +k++ +++++n
  CCD26615.1 742 NEKYLINKVYEEIPISELPLVCTNLPVIYLPAILKFIGD-FSMESQHIEFNLLWIKSLLSAHGAYMNNHKHlFS-TAIRSVQRFIGRIAKEVVTTSTNN 838
                 89*************************************.77****************************9666.9*********************** PP

                 HHHHHHHH CS
       Utp12  99 lgrLdyll 106
                 +++  +l 
  CCD26615.1 839 KYSYSFLT 846
                 **999986 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.1     2e+02      84     162 ..      36     115 ..      31     121 .. 0.72
   2 !   21.5   0.1   8.8e-08   0.00018      56     164 ..     253     362 ..     223     367 .. 0.81
   3 !    6.6   0.0    0.0031       6.3     104     162 ..     345     402 ..     345     411 .. 0.79
   4 !    7.1   0.0    0.0023       4.6      98     188 ..     424     508 ..     407     514 .. 0.76
   5 ?   -0.6   0.0      0.51     1e+03      74      96 ..     586     608 ..     578     636 .. 0.78
   6 ?   -3.0   0.0       2.8   5.6e+03     126     159 ..     714     747 ..     710     750 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.7 bits;  conditional E-value: 0.1
                 EEEEEECSCEEEEEEE.EES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE.-TT--EEEE-TTSSEEEEEE CS
       eIF2A  84 kvslfdlkvkviskle.eqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakae.aanatlvewspdgryvlTat 162
                 ++s+fdl  ++ +++e e+++N   f+ + +  ll    +  G+  + + k+k+ +++++  + + +v++sp+g++++ at
  CCD26615.1  36 RISVFDLINNQSFTFEyEHRKNIATFDLNKQATLLLSVDED-GRAILTNFKTKTVLHHFNfRERCYQVKFSPNGELFALAT 115
                 67888887777777753566788888887777777777664.777777777777777776346788999999999998776 PP

  == domain 2  score: 21.5 bits;  conditional E-value: 8.8e-08
                 EESSS.EEEEEE-TTSS-EEEEESSSSCEEEEEEC...SCEEEEEEEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETT.TTEEEEEEE-TT--.EE CS
       eIF2A  56 lkkegpihdvaWspkskefaviyGkmpakvslfdl...kvkviskleeqkrNtiffspkgklvllaGfgnlaGeleiwdvk.kkkkiakaeaanat.lv 149
                   ++ ++++v+   ks+  ++i G+ + +  l+++   ++ +  ++++++ Nt+  +++g+ ++++    l G+l +++ + +   ++++ ++++t ++
  CCD26615.1 253 FANQAKVKCVTFHHKSS--ILIVGFTNGEFRLYEMpsfTLLQQLSMGQNPVNTVTVNSTGEWLAFGS-SKL-GQLLVYEWQsESYILKQQGHFDSTnSL 347
                 55677788888877776..5677************644478888999***************99865.456.*******99666677778888776268 PP

                 EE-TTSSEEEEEE-T CS
       eIF2A 150 ewspdgryvlTatta 164
                  +spdg+ v+Ta   
  CCD26615.1 348 TYSPDGSRVVTAADD 362
                 9**********9865 PP

  == domain 3  score: 6.6 bits;  conditional E-value: 0.0031
                 -EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT-..-EEEE-TTSSEEEEEE CS
       eIF2A 104 NtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaana..tlvewspdgryvlTat 162
                 N++ +sp g  v++a      G++++wdv +  ++a++ + ++  t+v++  +g+ +  ++
  CCD26615.1 345 NSLTYSPDGSRVVTAA---DDGKIKVWDVVSGFCLATFTEHTSsvTQVQFAKKGQVLFSSS 402
                 8899999999999996...46*********8888887765554126789999999887665 PP

  == domain 4  score: 7.1 bits;  conditional E-value: 0.0023
                 EEEES--EEEE-TTSSEEEEE-TTSSS-EEEEEETTTTEEEEEEE-TT.--EEEE-TTSSEEEEEE-TTT-SSS-EEEEEETTTEEEEEEE- CS
       eIF2A  98 leeqkrNtiffspkgklvllaGfgnlaGeleiwdvkkkkkiakaeaan.atlvewspdgryvlTattaprlrvdngfkiwsysGklvykkef 188
                  e+ + N++  +p+g++v+ + + ++  ++ +w v++ + + ++   +  +++    + + vl + ++     d +++iws+ G+  + + f
  CCD26615.1 424 AERIQFNCLAVDPSGEVVCAGSIDSF--DIHVWSVQTGQLLDTLSGHEgPVSCLSFSQENSVLASASW-----DKTVRIWSIFGRSQQVEPF 508
                 566789********************..9*******99999998754414555444445555555555.....8899999999987666655 PP

  == domain 5  score: -0.6 bits;  conditional E-value: 0.51
                 EEEEESSSSCEEEEEECSCEEEE CS
       eIF2A  74 faviyGkmpakvslfdlkvkvis 96 
                 +a+i G  ++++ l+d+  +v+ 
  CCD26615.1 586 LAIIAGGNNNSICLYDVPNEVLL 608
                 68999999999999999655544 PP

  == domain 6  score: -3.0 bits;  conditional E-value: 2.8
                 EEEEEETTTTEEEEEEE-TT--EEEE-TTSSEEE CS
       eIF2A 126 eleiwdvkkkkkiakaeaanatlvewspdgryvl 159
                 +++i  +++++++++ e  na ++ +  + +y++
  CCD26615.1 714 DMDITPESTLECLKEKEYLNAIVMAFRLNEKYLI 747
                 68888899999***************99999986 PP

>> WD40_like  WD40-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       0.5   9.9e+02     141     197 ..      36      97 ..      21     111 .. 0.57
   2 !   11.5   0.1   6.8e-05      0.13       2     132 ..     148     278 ..     147     338 .. 0.78
   3 !    8.5   0.0   0.00057       1.1       5      87 ..     346     429 ..     342     460 .. 0.84
   4 !    7.0   0.0    0.0016       3.2       6      94 ..     475     564 ..     470     567 .. 0.82
   5 ?    4.4   0.0      0.01        20       5      34 ..     578     607 ..     575     615 .. 0.91

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.5
   WD40_like 141 afivfdlfsqniey..kisvkdiktfeiienkdilligte.geili...lkknvilqkidveg 197
                 +  vfdl++++  +    + k+i tf+   ++  ll++ + +   i   +k +++l+++++  
  CCD26615.1  36 RISVFDLINNQSFTfeYEHRKNIATFDLN-KQATLLLSVDeDGRAIltnFKTKTVLHHFNFRE 97 
                 55577777644322112344667777766.444444443303333312236677777777665 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 6.8e-05
   WD40_like   2 eiYsidiskkgslilyGgkddkctvlklesles...vsivesfedSvifvkllddd.lilvvtlDGtillsllenee.evenekieedistvkviddkl 95 
                 +i s+  s+++ +i+  +kd ++++ +++s+e+      +++ +d v+ + + dd+ +i  v  DG++ +  ++  +  +e+ +++ed   v++ + + 
  CCD26615.1 148 DILSLTWSQDSRFIISTSKDLTARLWSINSDEKdlaSMTFAGHRDYVMGAFFSDDQeKIYTVGKDGALFTWEFTPRQeDIEEAELNEDE--VDISKYHW 244
                 6789999*********************99876211345677789999887777767999********999998777689999999984..44444444 PP

   WD40_like  96 liGtnkGsiyvfskdlqleevllgqsseIkeikienn 132
                  i tnk   + f ++ +++ v+  ++s I+ +  +n+
  CCD26615.1 245 RI-TNK--NFFFANQAKVKCVTFHHKSSILIVGFTNG 278
                 44.332..35566666777777888887776666655 PP

  == domain 3  score: 8.5 bits;  conditional E-value: 0.00057
   WD40_like   5 sidiskkgslilyGgkddkctvlkleslesvsivesfedSvifvkllddd.lilvvtlDGtillslleneeevenekieedist 87 
                 s+ +s++gs ++  ++d k++v ++ s+     +++ + Sv  v++ ++  ++   +lDGt+   +l    + ++    e i +
  CCD26615.1 346 SLTYSPDGSRVVTAADDGKIKVWDVVSGFCLATFTEHTSSVTQVQFAKKGqVLFSSSLDGTVRAWDLIRYRNFRTFTAAERIQF 429
                 678999****************************************98873666789*****9988887776666666666655 PP

  == domain 4  score: 7.0 bits;  conditional E-value: 0.0016
   WD40_like   6 idiskkgslilyGgkddkctvlk.leslesvsivesfedSvifvklldddlilvvtlDGtillslleneeevenekieedistvkviddk 94 
                 + +s+++s+++  + d+++++ + +   ++v  +e ++d +  +   d+++i v tl G+i++ ++e +++v n +   di   + ++d+
  CCD26615.1 475 LSFSQENSVLASASWDKTVRIWSiFGRSQQVEPFEVYSDVLALSVRPDGKQIAVSTLKGQISMIDIESGNQVGNIDCRRDIISGRHTEDR 564
                 567888888888888999999883456788899999999999999999999999999999999999999999999999998776666665 PP

  == domain 5  score: 4.4 bits;  conditional E-value: 0.01
   WD40_like   5 sidiskkgslilyGgkddkctvlklesles 34 
                 si +s++g  i+ Gg+++ + +++++++ +
  CCD26615.1 578 SIHYSFDGLAIIAGGNNNSICLYDVPNEVL 607
                 899**********************99865 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.074   1.5e+02     180     214 ..     183     218 ..     135     307 .. 0.65
   2 !   10.1   0.1   0.00014      0.28     180     216 ..     333     370 ..     192     375 .. 0.79
   3 !    4.7   0.0    0.0061        12     185     216 ..     381     412 ..     372     420 .. 0.85
   4 !    4.7   0.0     0.006        12     187     220 ..     468     502 ..     444     507 .. 0.81
   5 ?   -1.7   0.0      0.54   1.1e+03     189     216 ..     513     540 ..     500     551 .. 0.80
   6 ?   -0.7   0.0      0.27   5.4e+02     183     211 ..     670     698 ..     658     702 .. 0.84

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.074
    Ge1_WD40 180 gllkieehs.liveaafspdGtalatasedGevkff 214
                 + + +  h   ++ a fs d   + t  +dG +  +
  CCD26615.1 183 ASMTFAGHRdYVMGAFFSDDQEKIYTVGKDGALFTW 218
                 555555554355555555555555555555554333 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00014
    Ge1_WD40 180 gllkieehs.liveaafspdGtalatasedGevkffqv 216
                  +lk + h     + ++spdG  + ta+ dG++k + v
  CCD26615.1 333 YILKQQGHFdSTNSLTYSPDGSRVVTAADDGKIKVWDV 370
                 4444444432466779********************98 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0061
    Ge1_WD40 185 eehsliveaafspdGtalatasedGevkffqv 216
                 e++s +++  f+  G +l  +s dG+v+ + +
  CCD26615.1 381 EHTSSVTQVQFAKKGQVLFSSSLDGTVRAWDL 412
                 34569***********************9976 PP

  == domain 4  score: 4.7 bits;  conditional E-value: 0.006
    Ge1_WD40 187 hs.liveaafspdGtalatasedGevkffqvyled 220
                 h   +++ +fs +  +la as d +v+ + ++   
  CCD26615.1 468 HEgPVSCLSFSQENSVLASASWDKTVRIWSIFGRS 502
                 433688999**********************9765 PP

  == domain 5  score: -1.7 bits;  conditional E-value: 0.54
    Ge1_WD40 189 liveaafspdGtalatasedGevkffqv 216
                  +   ++ pdG  +a+++  G++ +  +
  CCD26615.1 513 DVLALSVRPDGKQIAVSTLKGQISMIDI 540
                 55666788*************9987766 PP

  == domain 6  score: -0.7 bits;  conditional E-value: 0.27
    Ge1_WD40 183 kieehsliveaafspdGtalatasedGev 211
                 k++ +  +++  fsp   a a+as++G++
  CCD26615.1 670 KLKPEVRVTSVQFSPTANAFAAASTEGLL 698
                 56666789999***************986 PP

>> Nbas_N  Neuroblastoma-amplified sequence, N terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.42   8.5e+02     224     264 ..      91     130 ..      37     134 .. 0.78
   2 !    5.3   0.0    0.0052        10     221     260 ..     333     372 ..     248     388 .. 0.74
   3 !    7.0   0.0    0.0017       3.3     230     266 ..     512     548 ..     445     554 .. 0.77

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.42
      Nbas_N 224 rkaeekdgvfkmslspdgtllavihfsgklsiwdipslkqr 264
                  + + ++  +++ +sp+g l+a       + iw+ ps  q 
  CCD26615.1  91 HHFNFRERCYQVKFSPNGELFALA-TGRFIQIWKTPSATQD 130
                 455566778899999999988764.3445789999998775 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.0052
      Nbas_N 221 lysrkaeekdgvfkmslspdgtllavihfsgklsiwdips 260
                 +  +++   d    ++ spdg+++ +    gk+ +wd+ s
  CCD26615.1 333 YILKQQGHFDSTNSLTYSPDGSRVVTAADDGKIKVWDVVS 372
                 44566667788889999********************987 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0017
      Nbas_N 230 dgvfkmslspdgtllavihfsgklsiwdipslkqrge 266
                   v+ +s+ pdg  +av  + g++s+ di s +q g+
  CCD26615.1 512 SDVLALSVRPDGKQIAVSTLKGQISMIDIESGNQVGN 548
                 568999***********************99888776 PP

>> PALB2_WD40  Partner and localizer of BRCA2 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.2    0.0026       5.1     301     347 ..     362     407 ..     352     411 .. 0.83
   2 ?    4.3   0.0    0.0077        15     195     217 ..     444     466 ..     419     482 .. 0.83

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0026
  PALB2_WD40 301 sGaiavWdlllghctalllpesdesWslvrWsgtdsqllaGqkdGsv 347
                  G i vWd++ g c a ++ +  +s + v++++    l++   dG+v
  CCD26615.1 362 DGKIKVWDVVSGFCLATFTEH-TSSVTQVQFAKKGQVLFSSSLDGTV 407
                 699***********9987655.5678999***999999999999998 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.0077
  PALB2_WD40 195 gttvlnniviWnlktGqllkkie 217
                 g+ +  +i +W ++tGqll++++
  CCD26615.1 444 GSIDSFDIHVWSVQTGQLLDTLS 466
                 56677899***********9986 PP

>> Nop25  Nucleolar protein 12 (25kDa)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.0    0.0076        15      81     118 ..     865     913 ..     847     917 .] 0.58

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0076
       Nop25  81 eeeeeeeeeeee..eeeeeeeeeeewegfedee.........eeeeedd 118
                 +++e+e++++e+  e+e+++e+ e w gf++++         +ee++dd
  CCD26615.1 865 DNDESESDQKENllESENDDEDAEGWIGFTEKKtniplevggDEESDDD 913
                 2222222333336788999999********9988776555432222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       516  (0.0287802); expected 358.6 (0.02)
Passed bias filter:                      368  (0.0205254); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 5871.73
//
Query:       CCD26616.1  [L=536]
Description: hypothetical protein NDAI_0I00470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.8e-38  129.5   0.5    1.5e-37  127.5   0.5    2.1  1  Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domai
  ------ inclusion threshold ------
        4.9    8.0   7.5         13    6.7   0.6    3.3  3  DUF4829          Domain of unknown function (DUF4829)


Domain annotation for each model (and alignments):
>> Atx10homo_assoc  Spinocerebellar ataxia type 10 protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.5   0.5   1.7e-41   1.5e-37       1      98 [.     429     526 ..     429     527 .. 0.98

  Alignments for each domain:
  == domain 1  score: 127.5 bits;  conditional E-value: 1.7e-41
  Atx10homo_assoc   1 fKrelvrllgnlvyknkevqdkvreldgleliLsqcniDdnnPfirewailairnLlegneenqelvaeLeakgvvdeevLeelgleveidedg 94 
                      +K  +++++++l++++ e+q+k+rel+glel+Ls+c+iDdn+Pfi+e++i++ir+Llegne+nqe+va+Lea+++v++e+L e+g+ev++d++g
       CCD26616.1 429 CKLLIIEIMSMLTHNKFEIQEKIRELHGLELVLSNCVIDDNDPFIKERSIVCIRFLLEGNEKNQEFVAKLEAQKAVQDETLTEAGYEVKFDKSG 522
                      6899****************************************************************************************99 PP

  Atx10homo_assoc  95 klkl 98 
                       + l
       CCD26616.1 523 AIGL 526
                      9876 PP

>> DUF4829  Domain of unknown function (DUF4829)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.0     0.018   1.6e+02       7      74 ..     265     332 ..     262     364 .. 0.66
   2 ?    6.7   0.6    0.0014        13      34      86 ..     368     420 ..     349     430 .. 0.85
   3 ?   -1.4   0.0      0.42   3.8e+03      42      84 ..     476     520 ..     452     530 .. 0.60

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.018
     DUF4829   7 YFkalnkkdaeaakallskeslkkslnidfenlensklinisees....eekqklkyikylkgeennvkaen 74 
                 YF+ ++k+d  + +++l   +l+       +++++ +l  i   +    +e  ++++ ++ k+ e+n+ +++
  CCD26616.1 265 YFENIEKRDRAKFLNILKLMQLTITS---SDKWDKFELTAIMTWVfrifQETSNEVSEYF-KEHEDNETEAD 332
                 9**************98775554444...3466666666666655566666666667666.55555555444 PP

  == domain 2  score: 6.7 bits;  conditional E-value: 0.0014
     DUF4829  34 idfenlenskliniseeseekqklkyikylkgeennvkaenvkiykVefdlky 86 
                 i++ +l +++li +++ +++k+++  ik + g +++v++  +++ +V++d  +
  CCD26616.1 368 ISLLGLLQKELIRVNFFKDKKTNTTDIKTTNGMGEKVSDTSLIRRRVDYDNYK 420
                 556788899*******999******************************9743 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.42
     DUF4829  42 sklinisees..eekqklkyikylkgeennvkaenv..kiykVefdl 84 
                 + ++ i +    +ek+++  +k+  + ++ v++e +  + y+V+fd 
  CCD26616.1 476 RSIVCIRFLLegNEKNQEFVAKL--EAQKAVQDETLteAGYEVKFDK 520
                 44555555442234444444444..3333333333334788888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1105  (0.061632); expected 358.6 (0.02)
Passed bias filter:                      474  (0.0264376); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.42
# Mc/sec: 3841.27
//
Query:       CCD26617.1  [L=516]
Description: hypothetical protein NDAI_0I00480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-29  102.2   0.0    5.2e-29  100.3   0.0    2.1  2  Thr_synth_N  Threonine synthase N terminus
    2.2e-13   50.3   0.0    8.4e-13   48.4   0.0    1.8  1  PALP         Pyridoxal-phosphate dependent enzyme
  ------ inclusion threshold ------
       0.12   12.6   0.9       0.83   10.0   0.2    2.3  2  DUF2683      Protein of unknown function (DUF2683)


Domain annotation for each model (and alignments):
>> Thr_synth_N  Threonine synthase N terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.0   8.6e-33   5.2e-29       2      79 .]       8      88 ..       7      88 .. 0.95
   2 ?   -2.7   0.0       1.2     7e+03      11      24 ..     454     467 ..     446     487 .. 0.56

  Alignments for each domain:
  == domain 1  score: 100.3 bits;  conditional E-value: 8.6e-33
  Thr_synth_N  2 YiSTRgea.eklsfeeallkGlAeDgGLyvPeeiPklsaeel.eelrklsYaelafevlklfi.edeipeedLkeliekaY 79
                 Y+STR+++ e+ +fee++++GlA+DgGL++P +iP++s+e+l ++++kls++elafe+++l+i ++eip++dLk+li+++Y
   CCD26617.1  8 YRSTRSSDkETKTFEEVVIQGLAKDGGLFIPPTIPQVSQETLfSKWSKLSFQELAFEIMRLYIdSNEIPDADLKQLINRSY 88
                 9*****653999***************************98659************************************9 PP

  == domain 2  score: -2.7 bits;  conditional E-value: 1.2
  Thr_synth_N  11 klsfeeallkGlAe 24 
                  + +f ea+ + l++
   CCD26617.1 454 PAKFAEAVNNALSS 467
                  44555555444443 PP

>> PALP  Pyridoxal-phosphate dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.4e-16   8.4e-13      21     274 ..     107     432 ..      90     444 .. 0.71

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 1.4e-16
                 CCEEEEEEGGGSTTSBTTHHHHH...HHHHH.HHTT........TTTSEEEEEBSSHHHHHHHHHHHHH.T-EEEEEEETTS-.H.HHHHHHHHTT-EE CS
        PALP  21 gvplflKlEslnptgSfKdRgae...yllar.lkeg........tgaktvveassGNhgralAaaaall.Glkvtivvpadas.p.ekvallrllGaev 104
                 + +l +   ++ pt +fKd +++   +l+++ l+++        +++ tvv a+sG++g a+++  +    + v i+ p +   p +  +++     +v
  CCD26617.1 107 NENLHILELFHGPTYAFKDVALQfvgNLFEYfLQRTnaslpeseKKQITVVGATSGDTGSAAIYGLRGKkDVSVFILYPTGRIsPiQEEQMTTVPDKNV 205
                 445777677777***********6665555564444667777788**********************77689**9999988774424455555555544 PP

                 EEE..CCHHHHHHHHHHHHHHH..STTCEE--TTT..SHHHHHHHHTHHHHHH.......HHTTTTEEEEEEE-SSSHHHHHHHHHHHHHSTT-EEEEE CS
        PALP 105 vev..ggdydeavaaaaelaae..gegaylvsqfd..nptviegygtiglEil.......eqlggkpdavvvpvGgGgliaGiaaglkerrpdvrvigv 190
                      +g++d+++++++++ a+   +++++v   +  n ++i+++ t  +  +       +q   k++ +vvp G+ g i + +++ k + p  +++++
  CCD26617.1 206 QTLsvKGTFDNCQDIVKAIFADkdFNKRHNVGAVNsiNWARILAQMTYYFYSYfkaiegkDQSAVKVK-FVVPSGNFGDILAGYFAKKMGLPVEKLVIA 303
                 44355*************99996655566666654445555555555555554765555333334454.***********************8888888 PP

                 EECTTCGGTTCCS..S.SS..B.....................................SSS.CCSTCS....CGTTCCHHHHSEEEE......EEEEE CS
        PALP 191 epegsdalarslragrrvtvpvs....................................dtiadglavg....spselafelldrlvd......eivtv 243
                   +++d l r+l+ g++++ ++                                       i+     g      s+  f++ ++ +d          v
  CCD26617.1 304 T-NENDILDRFLKSGDYERSDEVaatlspamdilissnferllwylarenlagnddlkaGEIVN----GwfheLKSNGKFQVGQAVIDgalkdfASERV 397
                 5.55************999999998999999999999999999999999988888555533333....3343344555555554444444445667889 PP

                 EHHHHHHHHHHHH....HHHSB-B-HHHHHHHHHH CS
        PALP 244 sdeealeamrlla....rregivvepssaaalaal 274
                 sdee+++++++ +    +  ++v++p++a++++a 
  CCD26617.1 398 SDEETAATIKKIYeesvNPKKYVLDPHTAVGVCAS 432
                 99999999999884444446788899999888887 PP

>> DUF2683  Protein of unknown function (DUF2683)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.13   7.9e+02      30      62 ..     383     415 ..     372     420 .. 0.84
   2 ?   10.0   0.2   0.00014      0.83      29      76 ..     458     505 ..     436     507 .. 0.86

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.13
     DUF2683  30 aAidllieqyaeyllEaElkPefvekirnimKg 62 
                 a id   +++a++   +E   + ++ki + + +
  CCD26617.1 383 AVIDGALKDFASERVSDEETAATIKKIYEESVN 415
                 56888999**********9*******9987755 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00014
     DUF2683  29 saAidllieqyaeyllEaElkPefvekirnimKgeepidigdiedlrk 76 
                 + A++   + ++ y  E++  Pe ++k+    K  ++i+ +die  ++
  CCD26617.1 458 AEAVNNALSSFEGYSFEKDVLPEELKKLSTLPKKLKFIEKADIELVKA 505
                 679**************************************9997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       631  (0.0351944); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.23s 00:00:00.81 Elapsed: 00:00:00.41
# Mc/sec: 3809.02
//
Query:       CCD26618.1  [L=631]
Description: hypothetical protein NDAI_0I00490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     0.0065   16.3   2.6       0.18   11.7   0.0    2.9  3  SWIB          SWIB/MDM2 domain
  ------ inclusion threshold ------
          4    8.1  26.3         22    5.7   0.3    3.9  3  Secretin_N_2  Secretin N-terminal domain
        8.9    5.8   8.0       0.55    9.7   0.4    2.4  3  SMYLE_N       Short myomegalin-like EB1 binding proteins, N-t


Domain annotation for each model (and alignments):
>> SWIB  SWIB/MDM2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0     3e-05      0.18       3      39 ..     358     394 ..     356     406 .. 0.88
   2 !    3.8   0.1     0.009        54      39      73 ..     427     464 ..     419     465 .. 0.71
   3 ?   -2.8   0.1         1   5.9e+03      47      57 ..     537     547 ..     536     559 .. 0.69

  Alignments for each domain:
  == domain 1  score: 11.7 bits;  conditional E-value: 3e-05
        SWIB   3 vklspeLaellgekelsrpevvkklweYIkennLqdp 39 
                 ++ sp+L +++g  + s +e++  +++YI  n+L  +
  CCD26618.1 358 LQYSPQLTSIIGLARGSLHEAIYSIYKYILINDLLVD 394
                 578***************************9999654 PP

  == domain 2  score: 3.8 bits;  conditional E-value: 0.009
        SWIB  39 pedkreilcDekLkklfggkdr...vkffempkllkkH 73 
                   +k++i  D+ L++l++ + +   +k+ ++++l++ H
  CCD26618.1 427 NGEKTIIELDDLLSTLINDEIKpstIKLGDLQRLVSLH 464
                 568999***********643224447777777777766 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 1
        SWIB  47 cDekLkklfgg 57 
                  D+ ++++f+ 
  CCD26618.1 537 TDQEMRPIFQD 547
                 59999****64 PP

>> Secretin_N_2  Secretin N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.5    0.0041        24      21      57 ..     166     207 ..     157     227 .. 0.55
   2 ?    5.4   2.9    0.0045        27      21      59 ..     404     429 ..     392     448 .. 0.48
   3 ?    5.7   0.3    0.0037        22      31      46 ..     503     516 ..     495     574 .. 0.63

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0041
  Secretin_N_2  21 vtsGsvsssgsssssssssssssgsssssssssnss......s 57 
                   +t  +++s +++s+++++ ss + ++s+s +++n +      +
    CCD26618.1 166 ITAAAITSINNNSNTNNNPSSLQTNNSNSMNNNN-NaaasnpN 207
                   6667777777777776666622222222222222.11233342 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0045
  Secretin_N_2  21 vtsGsvsssgsssssssssssssgsssssssssnss..sgt 59 
                   v+  + ++++++ +++++++               +  +g 
    CCD26618.1 404 VNAKQQQNTNANVNTNNNNN---------------NntNGE 429
                   22222222222222222222...............212222 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0037
  Secretin_N_2  31 sssssssssssssgss 46 
                   s+sss+sss+  s++s
    CCD26618.1 503 SNSSSTSSSN--SNTS 516
                   2222222222..1111 PP

>> SMYLE_N  Short myomegalin-like EB1 binding proteins, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.4   9.2e-05      0.55     228     325 ..     220     312 ..     166     336 .. 0.64
   2 ?   -3.6   0.2         1   6.1e+03     349     359 ..     414     424 ..     395     453 .. 0.41
   3 ?    0.5   0.1      0.06   3.6e+02     241     297 ..     506     558 ..     473     615 .. 0.50

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.2e-05
     SMYLE_N 228 ssegesleeespassvesLdtavdvvkpakkkeeesekeakedeksdslseekteaesslsgsklelalsllkaleyrpvksargsklpvlvksklse 325
                  +++++ + ++++ s    d avd +kpa  keee++ke  ++e ++ +    ++ +  ++g++l+l l++ ++++y+p+ ++  s+ p++ +++++e
  CCD26618.1 220 LNDQNAQDPNRAKFSSFIQDIAVDFIKPA-PKEEETNKEIISSEIQQPQ----QQQNDLVNGTGLSLPLQMNQQQQYQPLVQPPASQPPLPQQQTKTE 312
                 33333333444444555568888866665.4555555555555444433....334667889*********************999988887776554 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 1
     SMYLE_N 349 lekalepesel 359
                 +++++++++++
  CCD26618.1 414 ANVNTNNNNNN 424
                 11111111111 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.06
     SMYLE_N 241 ssvesLdtavdvvkpakkkeeesekea.kedeksdslseekteaesslsgsklelals 297
                 ss +s +++++     ++ e + +ke  +  ++ d++ +e +   ++  ++   l l+
  CCD26618.1 506 SSTSSSNSNTS-----ANVEADPRKEMvTLLSELDKTDQEMRPIFQDFDKQITTLQLQ 558
                 12111111111.....111111111110111112222222222222222222233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1750  (0.0976072); expected 358.6 (0.02)
Passed bias filter:                      518  (0.0288917); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.26s 00:00:00.90 Elapsed: 00:00:00.42
# Mc/sec: 4547.44
//
Query:       CCD26619.1  [L=416]
Description: hypothetical protein NDAI_0I00500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-72  242.6   9.1    7.3e-72  242.3   9.1    1.1  1  DUF1682     Protein of unknown function (DUF1682)
  ------ inclusion threshold ------
       0.16   12.2   3.8       0.54   10.5   3.8    1.9  1  DUF4375     Domain of unknown function (DUF4375)


Domain annotation for each model (and alignments):
>> DUF1682  Protein of unknown function (DUF1682)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.3   9.1   8.2e-76   7.3e-72       1     323 []      44     407 ..      44     407 .. 0.94

  Alignments for each domain:
  == domain 1  score: 242.3 bits;  conditional E-value: 8.2e-76
     DUF1682   1 nfklEilllvllllyvlnyfiGkrkNkkiAkkwaaahkpllesn..Falvgfd..aekksslllkeseseftlyatGRrnvasllvtlkLlkRqdllsl 95 
                 n+++E+++l++l+l+v+ y+iG++ N+++Ak++++ + ++l+++  F++vgf+  ++k ++++ ++s+++ft++atGR++++s++v+ +L++R+++ ++
  CCD26619.1  44 NWTFELFALGALFLVVCSYLIGSSLNTSRAKNLFNPLVQYLKDDlnFTRVGFTtaSKKAQTFVSQHSNTWFTTFATGRSAIESITVRGHLISRNNPTAV 142
                 7*****************************************9888*******99999999************************************** PP

     DUF1682  96 llelvlslffesvaapkDrveievyledgk...................amdgfVfavvkKkemkklrkdrydlesltktkdnsklpeelvvmsEsaev 175
                 ++e++++l+f+ +++++ + ++e+ ++ +                    ++++f+ ++v+K+ m++ r+++y+l s+t+  +n++l +e+v+m E++++
  CCD26619.1 143 FMEFLINLLFPALSTETASEYAEIIIKPNGvhvanetsnvnsnaatlvdTNFKFISSIVNKTFMNESRDKNYFL-SVTHIAENDSLAKEYVYMGEFNQL 240
                 ***********9855555555555554323569*****************************************.************************ PP

     DUF1682 176 tealltpe......llkalnkagklleyliitDqpskkpetke...ser..krlilslrlpssssdleelspllklvlrliDkla............kr 251
                 + ++++++      l k+l+k+  +l+++++tD+ps +p +++   + +  +++++++++ ss++d+e l++l+++v+++iD+++            + 
  CCD26619.1 241 NRFMMEYSkgkgeiLNKLLKKSVGFLQFISFTDLPSVRPMDEDewaK-SlvPHVVIRTNFVSSKKDVEILKELISCVVEIIDNYTkglvtkgtvagtAD 338
                 ******999******************************99877742.3469*********9999******************************9988 PP

     DUF1682 252 aklrpevlkklkktReevekklkkeaeeekaEeaqekkeeekkkereeklaklspeeqrKyeekerkkeakK 323
                 + +++e+lkk+k+ R+++ +k++ke++  + Ee++ek++ee++++r++     ++ eq+K+++k+++k++++
  CCD26619.1 339 VIVTNEILKKTKNLRAQELAKIVKEMKMIEMEEQKEKRQEEERERRRQLK---KSGEQEKIDKKMKEKRERR 407
                 99*********************************999999999999855...899**************98 PP

>> DUF4375  Domain of unknown function (DUF4375)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   3.8   6.1e-05      0.54      35     100 ..     337     402 ..     333     412 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 6.1e-05
                 HHHH..CCHHHHHHCTT--HHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH.-GGGHHHHHHHHH CS
     DUF4375  35 gefi..nealkalrliGaeelakllekakklykkgkeelereerdeelealyeeeeeefdelDdefye 100
                 +++i  ne+lk  +++ a+elak+++++k +  ++++e ++ee++e+ ++l ++   e +++D++  e
  CCD26619.1 337 ADVIvtNEILKKTKNLRAQELAKIVKEMKMIEMEEQKEKRQEEERERRRQLKKS--GEQEKIDKKMKE 402
                 555566***********************9544444444444444445555333..555666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3138  (0.175024); expected 358.6 (0.02)
Passed bias filter:                      831  (0.0463495); expected 358.6 (0.02)
Passed Vit filter:                       130  (0.00725082); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.25s 00:00:00.88 Elapsed: 00:00:00.39
# Mc/sec: 3233.87
//
Query:       CCD26620.1  [L=212]
Description: hypothetical protein NDAI_0I00510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    7.2e-16   58.1   0.0    4.6e-12   45.9   0.1    2.9  3  Ank_5       Ankyrin repeats (many copies)
      2e-12   47.5   0.0    7.8e-10   39.2   0.0    2.3  2  Ank_2       Ankyrin repeats (3 copies)
    7.4e-09   36.0   1.4    6.6e-08   32.9   0.1    2.9  4  Ank_4       Ankyrin repeats (many copies)
    3.5e-08   33.6   0.8    0.00049   20.4   0.1    3.3  2  Ank         Ankyrin repeat
    5.6e-08   32.4   0.0    0.00011   22.3   0.1    4.4  5  Ank_3       Ankyrin repeat
  ------ inclusion threshold ------
      0.018   14.6   0.0      0.026   14.0   0.0    1.3  1  Inositol_P  Inositol monophosphatase family
      0.096   12.5   0.1       0.35   10.7   0.0    1.8  2  YfkB        YfkB-like domain


Domain annotation for each model (and alignments):
>> Ank_5  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.9   4.8e+03      22      36 ..       5      19 ..       5      23 .. 0.83
   2 !   45.9   0.1   1.8e-15   4.6e-12      10      55 ..      29      75 ..      26      76 .. 0.96
   3 !    8.7   0.0   0.00083       2.1      36      55 ..      86     106 ..      83     107 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.0 bits;  conditional E-value: 1.9
       Ank_5 22 vAakygaadvvrlLl 36
                +Aa+ g   +vr +l
  CCD26620.1  5 IAASDGKTGIVRQIL 19
                699999999999766 PP

  == domain 2  score: 45.9 bits;  conditional E-value: 1.8e-15
       Ank_5 10 nrldgggntpLhvAakygaadvvrlLl.argadlnltdsrGltaldl 55
                n +d++g+tp+h Aa yg+ d++r L+ ++g d+n++d++G+t+l++
  CCD26620.1 29 NSKDPNGYTPIHAAAAYGHIDLLRSLCsEFGGDINIRDNDGDTPLHH 75
                889******************************************86 PP

  == domain 3  score: 8.7 bits;  conditional E-value: 0.00083
       Ank_5  36 l.argadlnltdsrGltaldl 55 
                 + + g + +lt+++G+t+l++
  CCD26620.1  86 VeELGGNFTLTNNEGKTPLEV 106
                 456699*************97 PP

>> Ank_2  Ankyrin repeats (3 copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   3.1e-13   7.8e-10       3      63 ..       5      79 ..       3      97 .. 0.75
   2 !   13.2   0.0     4e-05       0.1      25      79 ..      68     128 ..      65     132 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.2 bits;  conditional E-value: 3.1e-13
       Ank_2  3 lAakngnlelvklLl..eg..adpn...k..ngktaLhyAakngnleivklLleh.......adndgrtpLhyAars 63
                +Aa++g++ +v+++l   +  +      k  ng t++h+Aa +g++++++ L+++        dndg tpLh++  +
  CCD26620.1  5 IAASDGKTGIVRQILttPNttF--TansKdpNGYTPIHAAAAYGHIDLLRSLCSEfggdiniRDNDGDTPLHHCEDY 79
                799988788******7633232..23242579*********************96687866666********98654 PP

  == domain 2  score: 13.2 bits;  conditional E-value: 4e-05
       Ank_2  25 ngktaLhyAakngnl.eivklLleh...adndgrtpLhyAarsg.hleivklLlek.gadi 79 
                 +g t+Lh++  +     iv+ L  +   ++n+g+tpL +  + g ++e++++L ek g+++
  CCD26620.1  68 DGDTPLHHCEDYATGkVIVEELGGNftlTNNEGKTPLEVVEEDGeSTELIQYLKEKsGISV 128
                 799****99776322134666665578888*********99885379******97767766 PP

>> Ank_4  Ankyrin repeats (many copies)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   2.6e-11   6.6e-08       2      42 ..      36      76 ..      35      76 .. 0.91
   2 ?   -3.2   0.0       5.5   1.4e+04      31      39 ..      96     104 ..      94     104 .. 0.83
   3 ?   -2.2   0.0       2.8   7.2e+03      14      26 ..     114     127 ..     111     130 .. 0.75
   4 ?   -0.1   0.0       0.6   1.5e+03      15      33 ..     145     161 ..     144     166 .. 0.76

  Alignments for each domain:
  == domain 1  score: 32.9 bits;  conditional E-value: 2.6e-11
       Ank_4  2 ltaLhyaaisgrlelvrlLl.ekgadinaqdnrsGetalhiA 42
                +t++h+aa++g+++l+r+L  e+g din + +++G+t+lh++
  CCD26620.1 36 YTPIHAAAAYGHIDLLRSLCsEFGGDINIR-DNDGDTPLHHC 76
                79***************777488*******.999******87 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 5.5
       Ank_4  31 dnrsGetal 39 
                 +n++G t+l
  CCD26620.1  96 TNNEGKTPL 104
                 4999***98 PP

  == domain 3  score: -2.2 bits;  conditional E-value: 2.8
       Ank_4  14 lelvrlLlek.gad 26 
                 +el+++L ek g++
  CCD26620.1 114 TELIQYLKEKsGIS 127
                 78899998876776 PP

  == domain 4  score: -0.1 bits;  conditional E-value: 0.6
       Ank_4  15 elvrlLlekgadinaqdnr 33 
                 e++r+ le+  d++a++n+
  CCD26620.1 145 ENIRYTLEN--DPDAVSNN 161
                 789999999..66688665 PP

>> Ank  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.9e-07   0.00049       1      32 []      34      67 ..      34      67 .. 0.87
   2 !   10.0   0.0   0.00037      0.94       1      18 [.      68      85 ..      68     128 .. 0.76

  Alignments for each domain:
  == domain 1  score: 20.4 bits;  conditional E-value: 1.9e-07
                TSBBHHHHHHHHTTHHHHHHHH.T.TTSTTCBTT CS
         Ank  1 dGnTPLHlAatngkkriiklLL.h.GAnlnaldn 32
                +G+TP H Aa +g+ + ++ L    G ++n++dn
  CCD26620.1 34 NGYTPIHAAAAYGHIDLLRSLCsEfGGDINIRDN 67
                8******99999*98899999873577******8 PP

  == domain 2  score: 10.0 bits;  conditional E-value: 0.00037
                TSBBHHHHHH....HHTTHHHH CS
         Ank  1 dGnTPLHlAa....tngkkrii 18
                dG+TPLH  +    t++   +i
  CCD26620.1 68 DGDTPLHH-CedyaTGK---VI 85
                8******9.53433544...33 PP

>> Ank_3  Ankyrin repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.38   9.8e+02       8      23 ..       5      20 ..       3      26 .. 0.84
   2 !   22.3   0.1   4.5e-08   0.00011       1      31 []      34      64 ..      34      64 .. 0.97
   3 ?    2.2   0.0      0.16   4.1e+02       1       8 [.      68      75 ..      68      89 .. 0.88
   4 ?    0.3   0.0      0.65   1.7e+03       2      28 ..     100     127 ..      99     129 .. 0.64
   5 ?   -2.3   0.0       4.5   1.2e+04       9      17 ..     157     166 ..     157     181 .. 0.51

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.38
       Ank_3  8 lAarsgnleivkfLle 23
                +Aa+ g++ iv+ +l 
  CCD26620.1  5 IAASDGKTGIVRQILT 20
                89******99**9997 PP

  == domain 2  score: 22.3 bits;  conditional E-value: 4.5e-08
       Ank_3  1 nGetpLhlAarsgnleivkfLlenkgadvna 31
                nG+tp+h Aa +g++++++ L+ ++g d+n+
  CCD26620.1 34 NGYTPIHAAAAYGHIDLLRSLCSEFGGDINI 64
                7****************************97 PP

  == domain 3  score: 2.2 bits;  conditional E-value: 0.16
       Ank_3  1 nGetpLhl 8 
                +G tpLh+
  CCD26620.1 68 DGDTPLHH 75
                699****8 PP

  == domain 4  score: 0.3 bits;  conditional E-value: 0.65
       Ank_3   2 GetpLhlAarsgnle.ivkfLlenkgad 28 
                 G tpL ++ + g  + ++++L e+ g+ 
  CCD26620.1 100 GKTPLEVVEEDGESTeLIQYLKEKSGIS 127
                 5666665555555644899998877776 PP

  == domain 5  score: -2.3 bits;  conditional E-value: 4.5
       Ank_3   9 Aarsgnle.i 17 
                 A++++++e +
  CCD26620.1 157 AVSNNDPEsL 166
                 6677776432 PP

>> Inositol_P  Inositol monophosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0     1e-05     0.026     221     249 ..      78     106 ..      60     129 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1e-05
                 HHHHHHHHHHHTTEEEEESSSCSSSTTSS CS
  Inositol_P 221 DhAAGeaileeaGGvvtdakgegrlllar 249
                 D A G +i+ee GG +t  + eg+++l+ 
  CCD26620.1  78 DYATGKVIVEELGGNFTLTNNEGKTPLEV 106
                 9*********************8887654 PP

>> YfkB  YfkB-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.36   9.3e+02      69      99 ..      68      98 ..      46     109 .. 0.63
   2 ?   10.7   0.0   0.00014      0.35      41     105 ..     103     167 ..      99     186 .. 0.88

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.36
        YfkB 69 dpdGrsrlnvnlftGdvivtdfgdeealgni 99
                d d       +  tG+viv ++g + +l+n 
  CCD26620.1 68 DGDTPLHHCEDYATGKVIVEELGGNFTLTNN 98
                3333333344666788888887777766664 PP

  == domain 2  score: 10.7 bits;  conditional E-value: 0.00014
        YfkB  41 PfyacseeeedrellkrlaeeknvtvrndpdGrsrlnvnlftGdvivtdfgdeealgnikeekle 105
                 P+    e+ e +el++ l+e+++++v nd+ G +  +++ f+ ++  t   d +a++n   e+l 
  CCD26620.1 103 PLEVVEEDGESTELIQYLKEKSGISVENDSLGLNEEELKQFKENIRYTLENDPDAVSNNDPESLA 167
                 666677888999************************************99999999998877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       927  (0.0517039); expected 358.6 (0.02)
Passed bias filter:                      642  (0.0358079); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 1651.46
//
Query:       CCD26621.1  [L=667]
Description: hypothetical protein NDAI_0I00520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.8e-49  167.9  33.2    2.4e-48  165.3  33.2    2.1  1  MBOAT     MBOAT, membrane-bound O-acyltransferase family
  ------ inclusion threshold ------
       0.14   12.5   8.5       0.31   11.3   8.5    1.6  1  MBOAT_2   Membrane bound O-acyl transferase family
        1.3    8.9   7.9        1.9    8.3   7.9    1.1  1  FCP1_C    FCP1, C-terminal
        4.2    5.8  18.4        8.5    4.8  18.4    1.4  1  Macoilin  Macoilin family


Domain annotation for each model (and alignments):
>> MBOAT  MBOAT, membrane-bound O-acyltransferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.3  33.2   5.5e-52   2.4e-48      51     347 ..     287     665 ..     237     666 .. 0.84

  Alignments for each domain:
  == domain 1  score: 165.3 bits;  conditional E-value: 5.5e-52
       MBOAT  51 llklllisyfvvgflel....................................klhslslvfrklasaallsklpslleylgYvffyp........... 102
                 + +++l syfvv ++++                                      h+++++f+ l+s +l +k++s+ +++gY++++            
  CCD26621.1 287 DGLMILASYFVVIIQYFikahvlkwdklgeiiaslyefafflvfnyklfdaslGFHWIARIFLYLHSMVLIMKMHSFSFFNGYLWNITkelnfskkalt 385
                 5568888888888888888888888999999999999999999999999999999*********************************55555555555 PP

       MBOAT 103 .......lllvGPilsyseymsfvesplsrllyta.................................krnfavalyalflgltylilieyvlskicak 161
                                           + +++l  +                                 + +f++++y+l++++ ++ +i+y+++k+ca 
  CCD26621.1 386 kykdapnD------------------EIIKTLERSrdfcehelkklqiqiddpsenfpnnitfksytmFLLFPTLVYQLSYPRSKKFRISYLFEKTCAV 466
                 55555553..................44444433355555555555555677789******************************************** PP

       MBOAT 162 dftifkmlssaqllmrsvimrilllllllfllif...dflglwlvalgedilsGlgvng...............arldrvadrniygdwenavsfsefw 242
                 ++tif m  +a l  ++    il+  ++   + +   +  +l+++ +++ +++ ++v++               a+ + ++dr++ygdw+n+ +f ef+
  CCD26621.1 467 FGTIFVMTLVAELYVYP---SILKADFMREHFVWpptKQQTLEWFYILFEVMPPFTVLYilafyliwdailnafAEMTFFGDRYFYGDWWNCITFIEFS 562
                 ********988776555...55555666666666222345789******************************************************** PP

       MBOAT 243 raWNipvhkWLlryvYkplgskkfklnkslatlatFlfsAvwHglalgyliwfvlrvllllveklimrlvalsnlkfdrrrailsnvifwlgaflgpsl 341
                 r+WN+pvhk+Llr+vY++++    kl + +at +tF fs+++H++a+ ++i++++r++++l+++ + ++   sn +  + +++l+nv+fw g+++gps+
  CCD26621.1 563 RIWNVPVHKFLLRHVYHSSM-NVWKLTRAQATMFTFIFSSIFHEYAM-FVIFKRVRCYMFLFQMSQLPMAWASNSRLLKDKKALGNVLFWGGVCSGPSV 659
                 *******************7.5689**********************.*************************************************** PP

       MBOAT 342 alllyl 347
                 +l lyl
  CCD26621.1 660 ILALYL 665
                 ****98 PP

>> MBOAT_2  Membrane bound O-acyl transferase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   8.5   6.9e-05      0.31      15      80 ..     546     621 ..     530     624 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 6.9e-05
     MBOAT_2  15 rrfWgrfWHqlfrrglkstakkilrlllg.....sk.....larylqllvaFllSGllHaagdytqlapestallf 80 
                 r f g +W+ ++   ++++ + ++++ l      s+     l+r  +++++F++S ++H+++ ++++++ ++ + +
  CCD26621.1 546 RYFYGDWWNCITFIEFSRIWNVPVHKFLLrhvyhSSmnvwkLTRAQATMFTFIFSSIFHEYAMFVIFKRVRCYMFL 621
                 679999***9998888887665555544433443335666699************************954443333 PP

>> FCP1_C  FCP1, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   7.9   0.00043       1.9     151     233 ..      32     115 ..      23     125 .. 0.74

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.00043
                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX CS
      FCP1_C 151 DkevDDilGeesDesdsekkkkeeeeeeeeeeeqerkpealeakeeeklastssserslaesvprGhkRkl.eeedaasesske 233
                  k+vD + G+ sD sds+ + +  e +e+++++ ++ ++ ++  +++++++++ss +s++ +++  +k  + +e+d++++++k+
  CCD26621.1  32 QKDVDQLNGKLSDSSDSSTSISGSEMNENDKDQLHQLSNIINSVSSSAKNQSTSSGSSTTTTTTTSKKPIIpTEDDENDNNNKK 115
                 599***************888887777777777777777777777766677777777777777777777776666666666655 PP

>> Macoilin  Macoilin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  18.4    0.0019       8.5     288     414 ..      16     145 ..       3     163 .. 0.60

  Alignments for each domain:
  == domain 1  score: 4.8 bits;  conditional E-value: 0.0019
    Macoilin 288 ymenkskskr..lsksessgsesellveesvkskssssssssnknskkas...agsagssnssskkhsessksvtsssssknskkqklpaGkssaalkd 381
                  +++ + s+r  +  ++++ ++ + + ++s++s++s s s+ n+n k++    ++ ++s++ss+k++s+ss+s t+++ ++ skk  +p+ +  ++ ++
  CCD26621.1  16 QLNSSTGSERrnSMIDQKDVDQLNGKLSDSSDSSTSISGSEMNENDKDQLhqlSNIINSVSSSAKNQSTSSGSSTTTT-TTTSKKPIIPT-EDDENDNN 112
                 333333333300344455555666666666666666666666666555540005556666666666666666655554.56678999985.44556777 PP

    Macoilin 382 aaenslpnnqlskkdalvrLeadikkLkaeLqa 414
                 + +n++ nn  ++   + + +++i+++k e+++
  CCD26621.1 113 NKKNIVVNNINATTTTISQNNSKINHIKLEIAK 145
                 778888888887777777777777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2097  (0.116961); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        80  (0.00446204); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.44
# Mc/sec: 4596.59
//
Query:       CCD26622.1  [L=276]
Description: hypothetical protein NDAI_0I00530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.6e-12   46.0   6.9    1.2e-11   45.1   6.9    1.5  1  WBS_methylT      Methyltransferase involved in Williams-Beure
    2.3e-11   44.2   0.0    8.3e-11   42.5   0.0    2.0  1  Methyltransf_25  Methyltransferase domain
    3.4e-11   43.6   0.0    7.6e-11   42.5   0.0    1.6  1  Methyltransf_11  Methyltransferase domain
    4.1e-06   27.4   0.0    2.1e-05   25.2   0.0    2.3  2  Methyltransf_12  Methyltransferase domain
    8.3e-06   25.7   0.0    1.9e-05   24.5   0.0    1.7  1  Methyltransf_31  Methyltransferase domain
     0.0001   22.2   0.0    0.00018   21.4   0.0    1.5  1  Methyltransf_23  Methyltransferase domain
    0.00069   19.3   0.0     0.0012   18.5   0.0    1.3  1  MetW             Methionine biosynthesis protein MetW
    0.00092   19.0   0.0     0.0042   16.9   0.0    2.0  2  PCMT             Protein-L-isoaspartate(D-aspartate) O-methyl
     0.0031   16.9   0.0      0.014   14.8   0.0    1.9  1  CMAS             Mycolic acid cyclopropane synthetase
     0.0091   15.7   0.1        1.5    8.4   0.0    2.2  2  N6_N4_Mtase      DNA methylase
  ------ inclusion threshold ------
      0.014   14.8   0.2       0.06   12.7   0.0    1.9  2  PrmA             Ribosomal protein L11 methyltransferase (Prm
      0.024   13.4   0.0        0.7    8.5   0.0    2.0  2  PLRV_ORF5        Potato leaf roll virus readthrough protein
      0.055   13.5   0.1       0.41   10.6   0.0    2.1  2  Methyltransf_32  Methyltransferase domain
      0.088   11.9   0.3        1.3    8.1   0.0    2.4  2  RrnaAD           Ribosomal RNA adenine dimethylase
       0.17   11.7   1.4       0.22   11.3   0.6    1.5  2  FACT-Spt16_Nlob  FACT complex subunit SPT16 N-terminal lobe d


Domain annotation for each model (and alignments):
>> WBS_methylT  Methyltransferase involved in Williams-Beuren syndrome
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   6.9     1e-14   1.2e-11      34      81 ..     221     273 ..     188     274 .. 0.66

  Alignments for each domain:
  == domain 1  score: 45.1 bits;  conditional E-value: 1e-14
  WBS_methylT  34 rrrkrkkr.....kkkkkkavk....sreWilkKKerrrkkGkeVkrdSKYTGRkRk 81 
                  ++++++       +k++    k    s+ +i +KKe+++k+G+ V +dSK+TGRkR+
   CCD26622.1 221 QENDQSVAnlrkkHKRG----KivesSKHYIQRKKELMKKRGRTVAKDSKFTGRKRR 273
                  22222221221112223....13456******************************8 PP

>> Methyltransf_25  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0     7e-14   8.3e-11       1      97 []      51     152 ..      51     152 .. 0.81

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 7e-14
                      EEEET-TTSHHHHHHHCTSTSSEEEEEESSHHHHHHHHHHHHHTTTTEEEEESBC.CGBSSSTTTEEEEEEESTGG........G.SSHHHHHH CS
  Methyltransf_25   1 vLdlGcGtGrltlalakrlgkakvtgvDiseemleaareraeeeglnvefvqgda.edlpfedgsfDlvvssgalh........h.lsdedlek 84 
                      +Ld+GcG+G   + l+++ g++ + g+Dis++ml++  +r     l+ +++ +d+ + +pf +g+fD+ +s+ a++        +  ++++l +
       CCD26622.1  51 ILDIGCGSGLSGEILSEE-GDHMWCGIDISPSMLATGLTRE----LEGDLMLQDMgTGIPFRAGTFDAAISISAIQwlcnadtsYnDPKKRLMR 139
                      8*****************.68***************99988....7889999999677*************77777444444333123344567 PP

                      HHHHHHHHEEEEE CS
  Methyltransf_25  85 alkeiarvLkpgG 97 
                      +++ ++ +Lk+gG
       CCD26622.1 140 FFNGLFAALKKGG 152
                      8888888888887 PP

>> Methyltransf_11  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   6.3e-14   7.6e-11       1      95 [.      52     155 ..      52     156 .. 0.85

  Alignments for each domain:
  == domain 1  score: 42.5 bits;  conditional E-value: 6.3e-14
                      EEET-TTSHHHHHHHHTT.SEEEEEES-HHHHHHHHHHCCHHT-EEEETTEECCC.TSS-TT-EEEEEEES-CCC-.......C....CHHHHH CS
  Methyltransf_11   1 LdvGcGtGrlaealakrg.arvvgvDlskemlklakekaseeglkvefvvadaek.lpfednsfDlvvssevlhhv.......e....dpekal 81 
                      Ld+GcG+G+  e l + g +   g+D+s+ ml++  ++  e     +++ +d+ + +pf+ ++fD+ +s ++++++       +    ++++++
       CCD26622.1  52 LDIGCGSGLSGEILSEEGdHMWCGIDISPSMLATGLTRELEG----DLMLQDMGTgIPFRAGTFDAAISISAIQWLcnadtsyNdpkkRLMRFF 141
                      8*****************99************6664444443....45778887759*******************976655505555****** PP

                      HHHHHHEEEEEEEE CS
  Methyltransf_11  82 keiaRvLkpgGllv 95 
                      + +   Lk+gG++v
       CCD26622.1 142 NGLFAALKKGGKFV 155
                      ***********998 PP

>> Methyltransf_12  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   1.8e-08   2.1e-05       1      99 []      52     154 ..      52     154 .. 0.74
   2 ?   -1.9   0.0         5   5.9e+03      26      42 ..     240     256 ..     207     268 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.2 bits;  conditional E-value: 1.8e-08
  Methyltransf_12   1 LeiGcGtGsllralleklpdieytgvDispsaiedakeklakrennnnnnvelealdlldldggssfDlvvasnvlhhl...........kdir 83 
                      L+iGcG+G   + l e+  d   +g+Disps++  a   +++ e++   +   + +        ++fD+ ++++++++l           k + 
       CCD26622.1  52 LDIGCGSGLSGEILSEE-GDHMWCGIDISPSML--ATGLTRELEGDLMLQDMGTGIPF----RAGTFDAAISISAIQWLcnadtsyndpkKRLM 138
                      8*******888888888.777777*********..55555555553333333333332....225****************9999987765666 PP

  Methyltransf_12  84 evldnirklLkpgGrl 99 
                      ++++ + ++Lk+gG++
       CCD26622.1 139 RFFNGLFAALKKGGKF 154
                      7888999999999975 PP

  == domain 2  score: -1.9 bits;  conditional E-value: 5
  Methyltransf_12  26 vDispsaiedakeklak 42 
                      v+ s++ i+++ke ++k
       CCD26622.1 240 VESSKHYIQRKKELMKK 256
                      44555555444443333 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.6e-08   1.9e-05       7     128 ..      51     175 ..      47     256 .. 0.80

  Alignments for each domain:
  == domain 1  score: 24.5 bits;  conditional E-value: 1.6e-08
  Methyltransf_31   7 vlDlGCGtGeltfelaeelgpkaevvGiDiseeaielArenaqklgldnveFeqgdiee.leklledekfDlilsnevl.......naladpdk 92 
                      +lD+GCG+G  +  l  e g+     GiDis+ ++    ++  +l+ d   +  +d+ + ++  +   +fD  +s +++          +dp+k
       CCD26622.1  51 ILDIGCGSGLSGEILS-EEGD-HMWCGIDISPSMLATGLTR--ELEGD---LMLQDMGTgIP--FRAGTFDAAISISAIqwlcnadTSYNDPKK 135
                      8*******98888888.6564.5579********9888886..56655...889********..999*********999666666544445555 PP

  Methyltransf_31  93 ile....eiervlkpggilliedprllaelpakveeeska 128
                       l+    +++ +lk+gg ++++ +   +e+++++ +  k+
       CCD26622.1 136 RLMrffnGLFAALKKGGKFVAQFYPKDDEQIDQILQAAKV 175
                      444788899999******9998666688888888777774 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   1.5e-07   0.00018      16     127 ..      42     166 ..      26     206 .. 0.73

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 1.5e-07
  Methyltransf_23  16 llpklraggrvLdiGcGtGillevlrengfsvt.gvDlspeaveiae.....kakkaqkdqfdeqeaaepqgkfdlIvlrevlehvpdpp.... 99 
                      ll + ++++ +LdiGcG+G   e+l+e+g ++  g+D+sp + +        ++   q+  +    +++ +g+fd ++++  + ++ +      
       CCD26622.1  42 LL-NIPPNSFILDIGCGSGLSGEILSEEGDHMWcGIDISPSMLATGLtreleGDLMLQDMGT---GIPFRAGTFDAAISISAIQWLCNADtsyn 131
                      33.35778889******************98777*****98655432444433333333333...88889999999888887777776555667 PP

  Methyltransf_23 100 .......ellrqiatllkpgGylllseplaslked 127
                             + ++ +++ lk gG ++ + + +++++ 
       CCD26622.1 132 dpkkrlmRFFNGLFAALKKGGKFVAQFYPKDDEQI 166
                      77787777777888889999998888776666544 PP

>> MetW  Methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   9.7e-07    0.0012      11      91 ..      45     126 ..      37     135 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 9.7e-07
        MetW  11 ikpgsrvldlGcGdGellellkeekqvdgrGleldeegvaecvakGls..viqgdldkdlenfedksfdyvvlsqtlqatrnp 91 
                 i+p+s +ld+GcG G   e+l ee +    G++++ + +a  +++ l+  ++ +d+ +++  f+  +fd ++   ++q + n+
  CCD26622.1  45 IPPNSFILDIGCGSGLSGEILSEEGDHMWCGIDISPSMLATGLTRELEgdLMLQDMGTGIP-FRAGTFDAAISISAIQWLCNA 126
                 89*******************************************9964478899999985.78899**99999999977665 PP

>> PCMT  Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   3.5e-06    0.0042      58      93 ..      32      67 ..      10      92 .. 0.79
   2 ?   -1.2   0.0       1.2   1.4e+03     159     180 ..     144     165 ..     142     180 .. 0.66

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 3.5e-06
                -HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHH CS
        PCMT 58 aphmvalalellelkkgarvLevGsGsGyltavlar 93
                + +m  +alell++ + + +L++G+GsG    +l++
  CCD26622.1 32 QAKMTLRALELLNIPPNSFILDIGCGSGLSGEILSE 67
                567888899*******************99988876 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 1.2
                 HHHTEEEEEEEEEEESBSSSEE CS
        PCMT 159 lidQLkeGGrlvvPvgeeeeQv 180
                 l+  Lk+GG++v+   ++   +
  CCD26622.1 144 LFAALKKGGKFVAQFYPKDDEQ 165
                 78889*****998666533333 PP

>> CMAS  Mycolic acid cyclopropane synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05     0.014      43     167 ..      28     159 ..      18     178 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.1e-05
                 HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHTS-SSS-EEEEES-GGG-----SEEEEES-GGGT. CS
        CMAS  43 LeeAqlaKldlileklelkpGmtlLdiGcGWGslvrraverydvkvvglTlSkeqaklakkrvdeldlerkvevklldyedldekvdrvvsvgafehv. 140
                 +++ q + + ++le l++ p + +LdiGcG G       e+ d   +g+ +S    ++   r  e dl  +   +   ++  ++ +d+ +s+ a++ + 
  CCD26622.1  28 VQHIQAKMTLRALELLNIPPNSFILDIGCGSGLSGEILSEEGDHMWCGIDISPSMLATGLTRELEGDLMLQDMGTGIPFR--AGTFDAAISISAIQWLc 124
                 56667777778999******************99999999999999******9988887766666665554444444444..46999999999999999 PP

                 ........SGGGHHHHHHHHHHHS-TT-EEEEEEE CS
        CMAS 141 ........gkenydtffkklkkllkedGllllhti 167
                          k+++ +ff+ l+ +lk++G ++ +  
  CCD26622.1 125 nadtsyndPKKRLMRFFNGLFAALKKGGKFVAQFY 159
                 99999988899999999999999999999988755 PP

>> N6_N4_Mtase  DNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0013       1.5     183     225 ..      38      82 ..      10      88 .. 0.82
   2 ?    5.3   0.1     0.012        14      24     104 ..     126     253 ..     105     267 .. 0.82

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.0013
                  HHH.HHHS-TT-EEEETT-TTTHHHHHHHHTT-E.EEEEESSHHH CS
  N6_N4_Mtase 183 rlI.klstkkgdivlDpFaGSGtTavaakelgrk.fiGieieeey 225
                  r++ +l  ++++ +lD  +GSG  +++  e+g + + Gi+i+++ 
   CCD26622.1  38 RALeLLNIPPNSFILDIGCGSGLSGEILSEEGDHmWCGIDISPSM 82 
                  5552445788**********************998899***9876 PP

  == domain 2  score: 5.3 bits;  conditional E-value: 0.012
                  GCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCCHHT.................................................HHHHHHHHH CS
  N6_N4_Mtase  24 eedsyeeyleflekvlkevrrvLkddgsifiniddseikk.................................................elkaladei 72 
                  +  sy++  ++l ++++ +   Lk++g ++ ++  +  ++                                                  + + a e+
   CCD26622.1 126 ADTSYNDPKKRLMRFFNGLFAALKKGGKFVAQFYPKDDEQidqilqaakvsgfngglviddpeskknkkyylvlssgaprnddnqvnldGVTMDAQEN 223
                  55677777888889999999999999999999988888778889999999999999999999999999999999999999999999664344444444 PP

                  TT-EEEEEEEEEEESSSTTTSTCCS-B--EEE CS
  N6_N4_Mtase  73 fggffllnvivwkkpnsmpesnkdrltsthEy 104
                    +  ++n + ++k +++ es+k ++++ +E+
   CCD26622.1 224 --DQSVANLRKKHKRGKIVESSKHYIQRKKEL 253
                  ..469999999999999999999888888886 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     5e-05      0.06     145     191 ..      30      77 ..      28      86 .. 0.72
   2 ?   -0.5   0.0      0.52   6.2e+02      14      80 ..     163     235 ..     152     255 .. 0.58

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 5e-05
        PrmA 145 HpTTklclealeklvkege.evlDvGtGSGiLaiaaakLgakkvvavD 191
                 H   k+ l+ale l+ + +  +lD+G+GSG+     +  g +  +++D
  CCD26622.1  30 HIQAKMTLRALELLNIPPNsFILDIGCGSGLSGEILSEEGDHMWCGID 77 
                 77789********9777662677*******755555555555555555 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.52
        PrmA  14 eeavsniLeel...gak.gvaiedsklleeedif.epaleeeel.keevkvkalfkeeteakeliaqlkesel 80 
                  e++ +iL+ +   g + g++i+d++  ++++++   + ++ +  +++v+++++  + +e ++ +a+l++++ 
  CCD26622.1 163 DEQIDQILQAAkvsGFNgGLVIDDPESKKNKKYYlVLSSGAPRNdDNQVNLDGVTMDAQENDQSVANLRKKHK 235
                 5666666666522322225788888855555555233333333335667777776666666666666666544 PP

>> PLRV_ORF5  Potato leaf roll virus readthrough protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.033        39      53     115 ..      14      76 ..       6      82 .. 0.87
   2 ?    8.5   0.0   0.00059       0.7     187     250 ..     186     248 ..     171     271 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.8 bits;  conditional E-value: 0.033
   PLRV_ORF5  53 yiedekqetkkidseyssqssvsavaayvfnvpkGsysvdisceGyqsvdsisdnedGrsdGl 115
                 y + e ++++      + q+++   a+ + n+p  s+ +di c    s + +s++ d  + G+
  CCD26622.1  14 YNDSESKKYTSSTRVQHIQAKMTLRALELLNIPPNSFILDIGCGSGLSGEILSEEGDHMWCGI 76 
                 67778888888888889999***********************99999999999999888886 PP

  == domain 2  score: 8.5 bits;  conditional E-value: 0.00059
   PLRV_ORF5 187 apkiqktdkynyvvsyGdytdkdmelGlisvvldehlesdveaervrrpirekhilvaeryepe 250
                  p+ +k +ky  v+s G   + d ++ l  v++d   e d +   +r+  + ++i+ ++++  +
  CCD26622.1 186 DPESKKNKKYYLVLSSGAPRNDDNQVNLDGVTMD-AQENDQSVANLRKKHKRGKIVESSKHYIQ 248
                 69999*****************************.78999999999999999999988888443 PP

>> Methyltransf_32  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00034      0.41      25      70 ..      47      89 ..      26     104 .. 0.84
   2 ?    0.3   0.1       0.5   5.9e+02      57      83 ..     240     266 ..     197     274 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 0.00034
  Methyltransf_32 25 galtvvDvGaGkgYLsfvlalkekeyklkvvgidakeelvekaekr 70
                     ++ +++D+G+G g  + +l+    e  +  +gid++ ++ ++  +r
       CCD26622.1 47 PNSFILDIGCGSGLSGEILSE---EGDHMWCGIDISPSMLATGLTR 89
                     56789****************...889********99987766555 PP

  == domain 2  score: 0.3 bits;  conditional E-value: 0.5
  Methyltransf_32  57 idakeelvekaekraeklgkkfnkrls 83 
                      ++++++ +++ +++ +k g++++k+ +
       CCD26622.1 240 VESSKHYIQRKKELMKKRGRTVAKDSK 266
                      455666666666666666666555544 PP

>> RrnaAD  Ribosomal RNA adenine dimethylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0011       1.3      18      50 ..      35      67 ..      18      74 .. 0.82
   2 ?    0.7   0.4      0.18   2.2e+02     182     224 ..     221     264 ..     153     274 .. 0.73

  Alignments for each domain:
  == domain 1  score: 8.1 bits;  conditional E-value: 0.0011
                HHHHHHHHH-GGTTSEEEEES-TTTCCHHHHHC CS
      RrnaAD 18 vineIldklnleekltvleigpGkGilTeeLak 50
                +  ++l+ ln+ ++  +l+ig G G+  e+L +
  CCD26622.1 35 MTLRALELLNIPPNSFILDIGCGSGLSGEILSE 67
                445678888888**************9999876 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.18
                 -SSSEEEEEEEE-SS-S.--S-HHHHHHHHHHHHCTTTSBCCCH CS
      RrnaAD 182 pkvdsalvelerkdedl.pqkdlkkyesvvrkllnrkrktlsts 224
                  + d ++ +l++k+++   +++ k+y +  ++l+ ++ +t+ + 
  CCD26622.1 221 QENDQSVANLRKKHKRGkIVESSKHYIQRKKELMKKRGRTVAKD 264
                 44577778888888777667888888888888888888888776 PP

>> FACT-Spt16_Nlob  FACT complex subunit SPT16 N-terminal lobe domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       5.1   6.1e+03     137     146 ..     152     161 ..     141     179 .. 0.51
   2 ?   11.3   0.6   0.00019      0.22      93     151 ..     193     251 ..     182     257 .. 0.82

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 5.1
                      SHHHHHHHHH CS
  FACT-Spt16_Nlob 137 Gkfveewkka 146
                      Gkfv +++ +
       CCD26622.1 152 GKFVAQFYPK 161
                      3333333322 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00019
                      .SSEEEEEEE.-S-HHHHHHHHHHHHHHHHTTTSEEEE-TT----SHHHHHHHHHHCCCG CS
  FACT-Spt16_Nlob  93 ekvevellvr.eKdadenkknfeklieaikeagkkvGvlaKdkseGkfveewkkalkeak 151
                      +k+ + l     + +d+n+ n++ ++   +e+ ++v+ l K  ++Gk+ve+ k  ++ +k
       CCD26622.1 193 KKYYLVLSSGaPR-NDDNQVNLDGVTMDAQENDQSVANLRKKHKRGKIVESSKHYIQRKK 251
                      4555555555245.99*************************************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       722  (0.04027); expected 358.6 (0.02)
Passed bias filter:                      452  (0.0252106); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                        15  (0.000836633); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.37
# Mc/sec: 2212.80
//
Query:       CCD26623.1  [L=380]
Description: hypothetical protein NDAI_0I00540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-13   51.3   0.0    2.4e-13   50.2   0.0    1.6  1  ADH_zinc_N    Zinc-binding dehydrogenase
     0.0082   16.0   0.3       0.14   12.0   0.1    2.3  2  ADH_N         Alcohol dehydrogenase GroES-like domain
  ------ inclusion threshold ------
      0.096   13.7   0.0       0.16   13.0   0.0    1.5  1  ADH_zinc_N_2  Zinc-binding dehydrogenase
       0.26   12.2   3.8       0.58   11.1   1.5    2.1  2  DUF4284       Immunity protein 22


Domain annotation for each model (and alignments):
>> ADH_zinc_N  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   5.3e-17   2.4e-13       1      81 [.     191     270 ..     191     305 .. 0.93

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 5.3e-17
                 HHHHHHHHHHHHTT-..EEEEEESSHHHHHHHHHTTESEEEETTTCHHHHHHHHHTTTSSEEEEEESSCSHHHHHHHHHCEEE CS
  ADH_zinc_N   1 gvGlaavqlAkalGa..eviavdsseeklelakklGadevinykeadlverikeltggegvdvvfecvGsgatleaalkllkp 81 
                 gvG+ ++qlAk l a  ++i+v+s+++ +el+k++Gad +++y+++d+ve+i+     ++++  +++v +++t+++ +k+++ 
  CCD26623.1 191 GVGQSLIQLAKKLHAynKIIVVCSKKH-FELMKSYGADDTFDYHDEDVVEQIRTKY--NNIQHLIDAVSNETTIQQVYKCAAD 270
                 8***************99999999998.***************665*******999..69********************986 PP

>> ADH_N  Alcohol dehydrogenase GroES-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   3.2e-05      0.14       5      61 ..      37      95 ..      33     102 .. 0.82
   2 ?    1.9   0.0     0.046     2e+02      91     108 ..     106     123 ..      97     124 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 3.2e-05
                EEEEEEEEE-HHHHHHHTTSTTTTSSSSEE---EEEEEEEEESTT-CS.....--TT-EEEE CS
       ADH_N  5 likvkaagiCgsDlhilkggkelevklplilGHEivGeveevgpevkk.....lkvGdrVvv 61
                likv a++ + s+++ ++       + + ilG ++vGe+ ++g++v +     +kvGd V  
  CCD26623.1 37 LIKVIAVAGNTSEFKHIDM---KLGPEGSILGCDVVGEILQLGSDVINtaeepFKVGDIVYS 95
                6777777777777777776...4677889*****************9999999****99965 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.046
                 S-SSSBSEEEECGGGEEE CS
       ADH_N  91 ldGgfaeyvvvpekklvk 108
                   G+faeyv v++++ +k
  CCD26623.1 106 HTGAFAEYVAVDSATTYK 123
                 58*********9887775 PP

>> ADH_zinc_N_2  Zinc-binding dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   3.5e-05      0.16       2      45 ..     225     270 ..     224     373 .. 0.82

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 3.5e-05
                   T-SEEEETTSTTHH..HHH-T..T-EEEEEES-HHHHH.HHHHHHEEE CS
  ADH_zinc_N_2   2 GAdevidyrtedfe..aatgg..egvDvvldtvggealleaslkvlpg 45 
                   GAd  +dy++ed++     +   +++++ +d+v +e++++++ k+ ++
    CCD26623.1 225 GADDTFDYHDEDVVeqI--RTkyNNIQHLIDAVSNETTIQQVYKCAAD 270
                   9************9552..33348899**************9998844 PP

>> DUF4284  Immunity protein 22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.099   4.4e+02      82     104 ..     200     222 ..     191     232 .. 0.74
   2 ?   11.1   1.5   0.00013      0.58      34     120 ..     225     304 ..     215     305 .. 0.82

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.099
     DUF4284  82 ekklnkanavillydkeyseite 104
                 +kkl+ +n +i++ +k++ e+++
  CCD26623.1 200 AKKLHAYNKIIVVCSKKHFELMK 222
                 599**********9998665554 PP

  == domain 2  score: 11.1 bits;  conditional E-value: 0.00013
     DUF4284  34 ckdlgleeyDeDfleikfleteaedieellekvsldseiieklkeklkekkln.kanavillydkeyseitekkaednelkfiGefey 120
                   d  +++ DeD++e +   t+ ++i+ l+ +vs+++  i+++  k++++k+  k   +++l+ ++    +++k+++ ++k iG++ y
  CCD26623.1 225 GADDTFDYHDEDVVEQIR--TKYNNIQHLIDAVSNETT-IQQV-YKCAADKVPvKLMQLVFLNIEN----IKEKDRKDNVKIIGTIIY 304
                 556678899***999988..99999**********999.5554.4677899999999999999977....678888899999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       705  (0.0393218); expected 358.6 (0.02)
Passed bias filter:                      546  (0.0304535); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.25s 00:00:00.78 Elapsed: 00:00:00.42
# Mc/sec: 2731.99
//
Query:       CCD26624.1  [L=179]
Description: hypothetical protein NDAI_0I00550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.6e-10   40.2   0.1    3.8e-10   39.7   0.1    1.2  1  Ribosomal_L19  Ribosomal protein L19


Domain annotation for each model (and alignments):
>> Ribosomal_L19  Ribosomal protein L19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.1   2.1e-14   3.8e-10      14     102 ..      76     165 ..      67     171 .. 0.85

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 2.1e-14
  Ribosomal_L19  14 dlpefkvGdtvkVkvkikegkkeRiqafeGvviarkgkg..isetftvRkisegvgvervfplhspkiekievvrrgk..vrrakLyYLrelk 102
                    +  ++k+Gd v+V++  k+   +   +f G v++  +k    ++++++R+ +  + ve  +pl+sp ie+i+++r++k   +r k yY+r+ +
     CCD26624.1  76 SKNSIKAGDIVRVTYDSKK---SDNDNFVGYVLSVDRKRfiQDSSLLLRNQIGKTYVELRVPLFSPLIERIDLLRQNKglRKRNKHYYIRNTR 165
                    45789*********98766...66789*****9988777435899*****************************985533799*******976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       414  (0.0230911); expected 358.6 (0.02)
Passed bias filter:                      342  (0.0190752); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 1406.74
//
Query:       CCD26625.1  [L=483]
Description: hypothetical protein NDAI_0I00560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.1e-27   94.7   0.0    8.2e-27   94.2   0.0    1.2  1  Peptidase_S8  Subtilase family
      0.001   19.7   0.0     0.0023   18.5   0.0    1.6  1  Inhibitor_I9  Peptidase inhibitor I9


Domain annotation for each model (and alignments):
>> Peptidase_S8  Subtilase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   9.1e-31   8.2e-27      57     283 ..     165     399 ..      35     418 .. 0.74

  Alignments for each domain:
  == domain 1  score: 94.2 bits;  conditional E-value: 9.1e-31
                   S.....................................SS........HHHHHHHHHH-B..SSSSSB-SSTTSEEEEEE-SSTTSB-HH..HHHHH CS
                   x.....................................xxxxxx....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8  57 d.....................................ngnsie....HGthvAGiaaanapeegekngvapgakilsvkvldtsggsmetgtelir 112
                   +                                               HGthvAG+++ +        gva ++++ +vk+ld +g+ +    ++i+
    CCD26625.1 165 KwhqgtdvnayiidsgidinqeefegrathgldltgegP----GdrngHGTHVAGLVGSK------TYGVAKNVTLVEVKALDRQGSGSL--ITVIS 249
                   244444444444444444444444444444444433332....04444*********998......99***************9999875..79999 PP

                   HHHHHHHCT-S.......EEEE-EESCETTCHHCHHHHHHHHHHHH.CCT-EEEEE--SS-T-HHEEE-TTCEECTTTSTTCEEEEEES.TTSSB-T CS
                   xxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxx RF
  Peptidase_S8 113 aieeaaedkvd.......vinmslgestslpktgrsiealainravnkkgvlvviSaGNngktgsslqagspvgtpstsknvitvgayt.tegkiap 201
                   a+e +++ ++        v n+slg ++  p   +     ai+++v ++gv+vv++aGN +         +   +p++ k++itvga++   + ia 
    CCD26625.1 250 ALEFVVN-HCGkskskkcVANLSLG-AFMMPLLNE-----AIKATV-DSGVVVVVAAGNGN-------IDACWCSPASEKSAITVGAFDdRIDTIAK 331
                   9999988.44447899*********.999999997.....889999.9*************.......44456689999**********45589*** PP

                   T--B-TT.......-EEEE-S-CCCCCCCCCHHHTTTHHEEEE-SHHHCHHHHHHHHHHHHHHHTT--HHHHHHHHHCCS-E CS
                   xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Peptidase_S8 202 fSsrGpssdgklkpdivapGgnivstwsrqsnnsaglssyqsmsGTSmAsPnaagaaAlllsalpkltpetvraallntAqd 283
                   fS+ G+++      di apG++ +s+ s ++n++        +sGTSmAsP +ag++ +ll+  +  ++e++r++l   A+d
    CCD26625.1 332 FSNWGSCV------DIFAPGVA-ISSLSIKDNQK-----SVEFSGTSMASPQVAGIVSILLD--QGVENEDIRDYLFELATD 399
                   *******9......6*******.44455555434.....5789****************995..346788888888877765 PP

>> Inhibitor_I9  Peptidase inhibitor I9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.6e-07    0.0023       2      80 ..      24      96 ..      23      98 .. 0.79

  Alignments for each domain:
  == domain 1  score: 18.5 bits;  conditional E-value: 2.6e-07
                  EEEEE-TTS-HHHHHHHHHHHHH....HHHHTT..--EEEEEEESS.SSSEEEEEE-GGGHHHHHTSTTEEEEEEEEEEE CS
  Inhibitor_I9  2 YIVtfkeaakaakkassheswhqsllksvlkgedsakagilysYki.lfnGfavklteeqaeklrkrpeVesVepDqsvr 80
                  Y V +k+  + ++ + + +  h +l k  l      + +i +++   +f+G  v lt++++ +++++p V+ V+p+ + +
    CCD26625.1 24 YLVSLKNSDSIQS-FMDSTYAHGQLMKDYL------HGKISKTFSFgSFRGLTVNLTKDVVSAIKENPLVVDVVPNMKIH 96
                  8888887555555.7777777775555543......56688888888****************************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       525  (0.0292822); expected 358.6 (0.02)
Passed bias filter:                      433  (0.0241508); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.39
# Mc/sec: 3747.32
//
Query:       CCD26626.1  [L=2231]
Description: hypothetical protein NDAI_0I00570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   8.5e-264  877.2   0.0   1.1e-263  876.8   0.0    1.2  1  ACC_central      Acetyl-CoA carboxylase, central region
   5.2e-186  619.1   0.0   7.5e-186  618.6   0.0    1.2  1  Carboxyl_trans   Carboxyl transferase domain
    5.2e-51  173.1   0.0    1.1e-50  172.1   0.0    1.5  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    8.4e-31  106.8   0.1    2.1e-30  105.5   0.1    1.7  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    1.7e-20   73.1   0.0    8.2e-20   70.9   0.0    2.2  2  Biotin_carb_C    Biotin carboxylase C-terminal domain
    4.5e-20   71.3   0.3    1.1e-19   70.0   0.3    1.8  1  Biotin_lipoyl    Biotin-requiring enzyme
    8.8e-05   22.3   0.1      0.012   15.4   0.0    2.6  2  Biotin_lipoyl_2  Biotin-lipoyl like
  ------ inclusion threshold ------
      0.021   14.8   0.0       0.11   12.5   0.0    2.2  2  ATP-grasp_3      ATP-grasp domain
      0.047   13.2   0.0       0.13   11.8   0.0    1.8  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
      0.075   13.0   0.0       0.23   11.4   0.0    1.8  1  RnfC_N           RnfC Barrel sandwich hybrid domain
      0.085   13.0   0.0       0.24   11.5   0.0    1.7  1  GxGYxYP_N        GxGYxY sequence motif in domain of unknown f
       0.16   11.7   0.0       0.38   10.5   0.0    1.5  1  ATPgrasp_Ter     ATP-grasp in the biosynthetic pathway with T


Domain annotation for each model (and alignments):
>> ACC_central  Acetyl-CoA carboxylase, central region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  876.8   0.0  7.7e-267  1.1e-263       1     733 []     768    1476 ..     768    1476 .. 0.96

  Alignments for each domain:
  == domain 1  score: 876.8 bits;  conditional E-value: 7.7e-267
                   EESXCCCXXXXEBXXSXXXXXX-SS.STTSCHHHHHHHHCHHHHHHHHT-SHTTTCCHHHHHHHHHHTSTCHHHHHHHHHHCCCTTTS-HHHHHHH CS
  ACC_central    1 eLDDpskVkkaepFegqlpelgsptsvvgekphqrlaallsaleniLaGYdnqakiketlkeLievLrdpeLPllelqevlsalsgrlPakleksl 96  
                   +LDDpskVk+a pFeg lp++gsp+ v+g+kp+ ++++l+++leniL+GYdnq++++++l++LievLrdp+LP++e++ ++sal++rlP +l+++l
   CCD26626.1  768 TLDDPSKVKHALPFEGLLPDFGSPV-VEGTKPAYKFQSLVTTLENILQGYDNQVIMNASLQQLIEVLRDPKLPYSEWKLQISALHSRLPVDLDEKL 862 
                   69***********************.********************************************************************** PP

                   HHHHHHHHHC..T..SS--HHHHHHHHHHHCTT-TTTTTTTTHHHHSHHHHHHHCCCTTCCHHHHHHCCCCCCCHHHHHHHHHT.ST.-HHHHHHH CS
  ACC_central   97 rkelekaasnitsvlaeFPakqlrkildsflaeltkkadrevlealvqplvqlverYrnGlkghelsvvlsLLeeYlevEklFqdgs.reedvvlk 191 
                   +++++++a++  s  a FPakq++k+ld+++++ ++   +++l  +++pl+++++rY++G+++he+sv+ ++LeeY++vEklF++++ ree+v+lk
   CCD26626.1  863 SELVDRSAKR--S--AVFPAKQIAKMLDNAVKQPDT---DAQLLSTLEPLLDITRRYTDGIEAHEHSVFVNFLEEYYDVEKLFSSANsREESVILK 951 
                   ****999999..7..99***************9663...4578899**************************************9889******** PP

                   HHHH-STCHHHHHHHHHHHHTHHHHHHHHHHHHHHCHCCCCHTCCCCCCCHHHHHCCCT--STTTHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHH CS
  ACC_central  192 LReknkddlakVvdivlShsqvskKnkLilalldelkpekpssselakelrevLkkLasLesketskVaLkArevLiqaklPsleerknqmesilk 287 
                   LR++n d+l+kV+ ivlSh++vs+Kn+Lila+l++++p ++ ss++a+ +++ L++L++Lesk+t+kVaL+Are+Liq +lPs++er++q+e+ilk
   CCD26626.1  952 LRDENIDNLDKVALIVLSHAKVSAKNNLILAILKHYQPLCKLSSHVAHIFTTPLQHLVQLESKSTAKVALQAREILIQGALPSVKERTEQVEHILK 1047
                   ************************************************************************************************ PP

                   HHHSBSSTTSS-...SS--HHHHHHHHT-SS-SHHHHCCCCCSSSHHHHHHHHHHHHHHHTTTSEEEEEEEEESS.STCEEEEEEE-T---TCGCS CS
  ACC_central  288 ssvdesgygesk...repslevlkeLidsettvfDvLpsfFyhsdevvrlaalevYvrraYraYelksiqhheeeesplivewqFklpsshseeks 380 
                   ssv+ + yg s+   +ep+le+lk+Lids++ vfDvL++f++h d++v+ aa++vYvrraYraY++ +++ h +  s++++ew+F+lps++ ++ +
   CCD26626.1 1048 SSVVGTTYGASNskrTEPDLEILKDLIDSNYVVFDVLIQFLNHPDPAVAAAAAQVYVRRAYRAYTVGEVRGHAST-SNPVIEWKFQLPSAAFSSIP 1142
                   *********9999999*********************************************************99.99**********86655443 PP

                   SS--SSSSS-B--TT-EEESSTTTS--S-SSSS--EEEEEEEESSCCGHHHHHHCHHCTS-----------....-----------EEEEEEECET CS
  ACC_central  381 asssstsssesesskriasvsdlsslsskseeepkrtGvmvafksledleealdevleefeeskksesseekeeeeeesssseepinvlnvairsa 476 
                         + ++++ ++r+ svsdl+++  +se++p rtG++va+++l+d++++l+e l  ++e++++     +    ++s ss++++nv n++++s+
   CCD26626.1 1143 ------QMRTKMGMNRAISVSDLTYV-VDSEHSPLRTGILVAADHLDDVDTNLSESLGVIPEHAST-----TGPVPDRSGSSSSLSNVANIFVAST 1226
                   ......567899999999********.678999***************************774333.....3334456788999************ PP

                   TT-S.CCCCCCCCHHHHHHCCCHHHHTTEEEEEEEE--.TS---EEEEEET..TTEEECTTCTS-CCCHHHCTCCCGTTEEEEEE--SSTTEEEEE CS
  ACC_central  477 enad.deellekleeilkelkeeLeaagvrrvTfivgr.kgeyPkyfTFrerdeykEdeiiRhiEPalafqLELnrLsnfdikpvptenrqiHlYe 570 
                   e+++ ++++l++++eil+ +k++L+++ +rr+Tf++g  +g+yPky+TF+++ +y+E+e+iRhiEPa+afqLEL+r+snf+ikp++tenr+iH+Ye
   CCD26626.1 1227 EGFEnETAILKRIREILDVNKQDLIKSAIRRITFMFGCtDGSYPKYYTFNGP-SYNENETIRHIEPACAFQLELGRMSNFNIKPIFTENRNIHVYE 1321
                   ****7888****************************7747***********9.******************************************* PP

                   EEESS-T....T-EEEEEEEEE-BSS--TTS-HHCHHHHHHHHHHHHHHHHHHH...C--TTBSSEEEEEEEEEEESS-HHHHHHHCCCHHHHHHH CS
  ACC_central  571 avakeeekkevtdkRfFvRaiirhsdlrdkeasaeyliseaerlllealdeLEvaskkeakrtdlnHiFlnfvpeveldpeeveeavrsflerygk 666 
                   av+k+++     dkRfF+R iir+++++ ++++++yl+sea+rl++++ld+LE+   ++++++dlnHiF+nf+++++++pe+ve+a+++fl r+gk
   CCD26626.1 1322 AVSKTSP----LDKRFFTRGIIRTGRISADISIQKYLTSEANRLMSDILDNLEI---IDTSNSDLNHIFINFSAVFDVSPEDVEAAFAGFLARFGK 1410
                   *******....*******************************************...*************************************** PP

                   HHHHTTEEEEEEEEEEC-TTT-SEEEEEEEEEETTSSCEEEEEEEEEE-TT.SSEEEEESST-STTS CS
  ACC_central  667 RlwrLrVlqaEirivirlsetgkaiplRlvitnesGyvlkielYkEvkdektgevvfksigkkgplh 733 
                   R  rLrV++aEiri+i++++tg+++plR++i+n+sGyv+k+elY+Evk++k ge+vfks+gk+g++h
   CCD26626.1 1411 RYLRLRVSSAEIRIIIQDPKTGTPVPLRALINNVSGYVVKSELYTEVKNNK-GEWVFKSLGKPGSMH 1476
                   ***************************************************.**************9 PP

>> Carboxyl_trans  Carboxyl transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  618.6   0.0    5e-189  7.5e-186       1     494 []    1571    2128 ..    1571    2128 .. 0.96

  Alignments for each domain:
  == domain 1  score: 618.6 bits;  conditional E-value: 5e-189
                      SSCTTCEEEEEEEEHTTSGGGEBEHHHHHHHHHHHHHHHHHT..EEEEEEEESBETTEEHHHHTTEEEEESSTTSGGGCEE...ECHHHHHHH CS
  Carboxyl_trans    1 kehprGkltareridllldpgsFgeledlffhrvtelgrkkklprdgvvtgsGaviGravevvaqdktvlggslgpakgek...llkaqeeai 90  
                      +e+prG+++++ ++d+++++gsFg++ed+ff++vte++rk+++pr++++++sGa+iG a+e+v+  ++++ ++ ++ kg++   l+++ +e++
      CCD26626.1 1571 PEYPRGRQFVIVANDITYKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGIAEELVPLYQVAWKDDKDQSKGFEylyLTPEGMETL 1663
                      69*******************************************************************************777777777777 PP

                      HH...............TEEEEEEEEE-ES.SSGHHSSHHHHHHHHHHHHHHHHHHHCS-EEEEESSEEETHHHHHHHHTSEEEEETTEEEEE CS
  Carboxyl_trans   91 ka...............gepligindsgGa.egriqegveslrgsGkifgenskasgeIpqislvtgrcaGggaYlpalgdrvimveetskif 167 
                      k+               ge++++i++++Ga eg   +gve+lrgsG i+g++s+a+++I++i+lvt+r++G+gaYl++lg+r+i++e+ ++i+
      CCD26626.1 1664 KSygkeksvltervvenGEERFIIKTIIGAeEG---LGVECLRGSGLIAGATSRAYQDIFTITLVTCRSVGIGAYLVRLGQRAIQIEG-QPII 1752
                      77****************************666...****************************************************.**** PP

                      SSTHHHHHHHHSSCC-SSCHHHHSHHHHTTTTSSSEEESSHHHHHHHHHHHHTTS-SSTTSGGSS----ECSSGSSSH..HCS-CTTTS---H CS
  Carboxyl_trans  168 ltGpdvikkvlgreevtseelgGatqhmtksGvahltaeddeealelirkllsylPkkasnnresaPivetadepdrdlieivPdnakkpyDv 260 
                      ltG+++i+kvlgre+++s+ ++G+tq+m+++Gv+hlta+dd++a+e+i+++lsy+P+k+++   ++Pi+et d++dr+ i+++P   ++pyDv
      CCD26626.1 1753 LTGAPAINKVLGREVYSSNLQLGGTQIMYNNGVSHLTASDDLAAVEQIMEWLSYIPAKRNM---PVPILETEDKWDRQ-IDFIPR-VNEPYDV 1840
                      ********************************************************88888...*************6.******.8****** PP

                      HHHHHCEEC...........TTC-EEESTTSSTTEEEEEEEETTEEEEEEEE--S....................EEETTEE-HHHHHHHHHH CS
  Carboxyl_trans  261 reviarlvd...........egeFlEikegyAktvVvGfArlgGipvGvvAnetr....................veaGqvlfidsavKaarf 322 
                      r++i++++            +g+F+E+++g+Ak vVvG+ArlgGip+Gv+++et+                    +eaGqv++++sa+K+a++
      CCD26626.1 1841 RWMIEGRTLedggfeyglfdKGSFFETLSGWAKGVVVGRARLGGIPLGVIGVETKtienlipadpanpdsresliQEAGQVWYPNSAFKTAQA 1933
                      *****987666********************************************************************************** PP

                      HHHHHH.TT--EEEEE-BSEE--SHHHHHTTHHHHHHHHHHHHHT--S-EEEEE-T..EEEHHHHHTTTGGGSTTTTE.EETTT-EEESS-HH CS
  Carboxyl_trans  323 irlcda.enlPlviladvrGflvGqrqeyggilkhGaklvdalaeakvPkitvilr..kayGGayvvmdskingadlv.aawptariaVlgpe 411 
                      i+++++ e+lPl+ila++rGf++Gqr++y+++lk+G+ +vdal+++k+P+ ++i++  +++GG++vv+d++in++++  +a++++r++Vl+pe
      CCD26626.1 1934 IKDFNHgEQLPLMILANWRGFSGGQRDMYNEVLKYGSFIVDALVDYKQPISIYIPPtgELRGGSWVVVDPTINSDQMEmYADKDSRAGVLEPE 2026
                      *************************************************************************995548************** PP

                      HHHHHHSHHHHHHHHHHH.........HHHHHH.............HHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHTTSSSEEEHGGG CS
  Carboxyl_trans  412 gaveilfrkekaaaemer.........kdlaae.............rkkklkeyeeellnpyvaaargfaDavidpsetraklvialelewkk 482 
                      g+v+i++r+ek   +m+r         +    +             ++k+l  +e++l+++y++++++faD++++++++  k+vi++elew +
      CCD26626.1 2027 GMVGIKYRREKLLGTMARldekyktlrE----KlsnkdlsveehqdISKQLLIRERQLMPIYNQISIQFADLHDRSQRMVSKGVIRQELEWVE 2115
                      ******************8777744441....36666777778888*********************************************** PP

                      HH.HHHHHHHHHH CS
  Carboxyl_trans  483 ar.klparkrrni 494 
                      ar ++++r+rr++
      CCD26626.1 2116 ARrFFFWRLRRRL 2128
                      999*******985 PP

>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.1   0.0   7.5e-54   1.1e-50      24     209 ..     232     413 ..     220     415 .. 0.96

  Alignments for each domain:
  == domain 1  score: 172.1 bits;  conditional E-value: 7.5e-54
                  BSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEEEEEETTS-EEEEEEEEECCECTC CS
  CPSase_L_D2  24 vetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEvevlrDakgnvitvcerenslqlrt 121
                   ++ e+ l  ak+ig+Pv+ika+ g+GGkG r ++ ee+++ l+++a +e +     + +++ k   + +++Ev++l+D++gn i ++ r++s+q+r+
   CCD26626.1 232 CSSPEDGLVKAKKIGFPVMIKASEGGGGKGIRQVEREEDFIPLYHQAANEIP----GSPIFIMKLAGKARHLEVQLLADQYGNNISLFGRDCSVQRRH 325
                  5678999999****************************************96....789*************************************** PP

                  CCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HHHHHHHHHTT--GC CS
  CPSase_L_D2 122 qkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlvkeaakialgekLe 209
                  qk+ie+AP     +e + +++++av++ + vg+v+agtve+l++++++++y++E+N+Rl+ve++ +e++TG++l + +++ia+g++++
   CCD26626.1 326 QKIIEEAPVTIAPPEIFAQMEKSAVRLGQLVGYVSAGTVEYLYSHDEQKFYFLELNPRLQVEHPTTEMVTGVNLPASQLQIAMGIPMH 413
                  ************************************************************************************9876 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.1   1.4e-33   2.1e-30       2     110 .]      59     180 ..      58     180 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.5 bits;  conditional E-value: 1.4e-33
                    --EEEE---HHHHHHHHHHHHHT.........T-EEEEEEEGG..GTTSHHHHHSSEEEEEESSTTCCGGG-HHHHHHHHHHTT-SEEE--SSTTT CS
  Biotin_carb_N   2 ikkvlianrGeiAvriiravrel.........gietvavysee..danslhvreadeavelgpasasesYlniekivkaakesgadavhpGyGfls 86 
                    i+k+lian+G +Av+ ir+vr++          i++va++++e  +an++++r+ad++ve+++++++++Y+n++ iv++a+++++dav+ G+G++s
     CCD26626.1  59 ISKILIANNGIAAVKEIRSVRKWayetfgddrTIQFVAMATPEdlEANAEYIRMADQYVEVPGGTNNNNYANVDLIVDIAERANVDAVWAGWGHAS 154
                    78*****************************************5568899********************************************** PP

                    T-HHHHHHHH..HTT-EESSS-HHHH CS
  Biotin_carb_N  87 Enaefaeave..eagivfiGPsaeal 110
                    En++++e+++  ++++vfiGP+ +a+
     CCD26626.1 155 ENPHLPEKLAksKRKVVFIGPPGSAM 180
                    *********944589*******9987 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   5.5e-23   8.2e-20       2     107 ..     457     563 ..     456     564 .. 0.99
   2 ?   -2.1   0.0       2.8   4.2e+03       8      32 ..     699     723 ..     695     731 .. 0.83

  Alignments for each domain:
  == domain 1  score: 70.9 bits;  conditional E-value: 5.5e-23
                    EEEESEETTTTTEE--CE-SEEE---STTEEEEE---TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEES.S-BSHHHHHHHHH-HHH CS
  Biotin_carb_C   2 aRinaEdpeknflpssGkvtelelpegpgvRvdsgveegsevspyyDsllaKlivhgetreealarlrraLaelrieG.vktnieflrailedeef 96 
                    +Ri++Edp+++f ps G ++el++ ++ +v+ + +v ++  ++++ Ds ++++++ ge+r++  + +  aL+el i+G ++t++e+l ++le+e+f
     CCD26626.1 457 CRITSEDPNEGFKPSGGSLHELNFRSSSNVWGYFSVGNNGGIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGdFRTTVEYLIKLLETEDF 552
                    9*********************************************************************************************** PP

                    HHT---TTTCC CS
  Biotin_carb_C  97 akgeldtkfle 107
                    ++++++t++l+
     CCD26626.1 553 EDNTITTGWLD 563
                    *********98 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.8
                    ETTTTTEE--CE-SEEE---STTEE CS
  Biotin_carb_C   8 dpeknflpssGkvtelelpegpgvR 32 
                    dp++   ps+Gk+ ++ + +g +++
     CCD26626.1 699 DPTQLRTPSPGKLVKFLVENGDHIK 723
                    7888889********9999988876 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.3   7.6e-23   1.1e-19       2      73 .]     702     767 ..     701     767 .. 0.97

  Alignments for each domain:
  == domain 1  score: 70.0 bits;  conditional E-value: 7.6e-23
                    EEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEEE CS
  Biotin_lipoyl   2 eiksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllaki 73 
                    ++++P++G++v+     +lv++Gd++kagq++ae+e+mKm+m++ a+++Gvv+ ++++ G+t+ +gd++a++
     CCD26626.1 702 QLRTPSPGKLVK-----FLVENGDHIKAGQPYAEIEVMKMQMPLVAQESGVVQLLKQP-GSTIVAGDIIAIL 767
                    899*********.....*****************************************.**********986 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.2e-06     0.012       3      35 ..     701     733 ..     695     743 .. 0.88
   2 ?    4.5   0.2     0.021        31      12      34 ..     746     768 ..     732     778 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 8.2e-06
  Biotin_lipoyl_2   3 vsIaapvsGrVaqlnVkdGqrVkaGdvLaelDs 35 
                      +++  p +G++++ +V+ G+++kaG+  ae++ 
       CCD26626.1 701 TQLRTPSPGKLVKFLVENGDHIKAGQPYAEIEV 733
                      6888999*******************9999875 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.021
  Biotin_lipoyl_2  12 rVaqlnVkdGqrVkaGdvLaelD 34 
                       V+ql+ + G  + aGd++a+l 
       CCD26626.1 746 GVVQLLKQPGSTIVAGDIIAILT 768
                      4899999*************996 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.9   4.3e+03      73     126 ..      88     140 ..      86     143 .. 0.82
   2 ?   12.5   0.0   7.5e-05      0.11      30     159 ..     245     385 ..     219     387 .. 0.68

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 2.9
                  EEEEEEEEE.SSSEEEEEEEEEEEET....TEEEEEEES----HHHHHHHHHHH CS
  ATP-grasp_3  73 kplSvsllsdgekvlvlavnrqliekaekefvyaGnvtpietelkeevvelaee 126
                  ++ ++++++   +  +l  n ++i +a + +   G++ + ++ + + +v++ae+
   CCD26626.1  88 DDRTIQFVA-MATPEDLEANAEYIRMADQYVEVPGGTNNNNYANVDLIVDIAER 140
                  566778888.55888999999999999998999999999999999999988887 PP

  == domain 2  score: 12.5 bits;  conditional E-value: 7.5e-05
                  -SSSEEEEESS-------B--SS--TTE................EEEE---SEEEEEEEEE.SSSEEEEEEEEEEEET....TEEEEEEES----HHH CS
  ATP-grasp_3  30 eekklvvKprdGaggesvrvveekeeaeaaieeve.........lvqefieGkplSvsllsdgekvlvlavnrqliekaekefvyaGnvtpietelke 118
                     ++ +K ++G+gg+++r ve +e+     ++ +         +++   + ++l v+ll+d+  + +  + r    +++++ +   + +p+      
   CCD26626.1 245 IGFPVMIKASEGGGGKGIRQVEREEDFIPLYHQAAneipgspifIMKLAGKARHLEVQLLADQYGNNISLFGRDCSVQRRHQKII--EEAPVTIA-PP 339
                  466789****************996665544443356666775555555555667777777766666666655554333333332..44555433.56 PP

                  HHHHHHHHHHTTSTT--EEEEEEEE...ESS...SEEEEEEESS-- CS
  ATP-grasp_3 119 evvelaeevvekleglaGyvGvDlv...lkd..eepyviEvNPRlt 159
                  e+++ +e+   +l +l+Gyv    v   ++   ++ y++E NPRl+
   CCD26626.1 340 EIFAQMEKSAVRLGQLVGYVSAGTVeylYSHdeQKFYFLELNPRLQ 385
                  777777777778889999997666655544335999********97 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.7e-05      0.13      33      95 ..     243     308 ..     227     383 .. 0.73

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 8.7e-05
                      HHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT..-SCEEEEE--.ESEEEEEEEEETSS CS
  Dala_Dala_lig_C  33 eelgypvfVKpareGSSvGvskveseeelkeaieeafky..dekvlvEeai.egreievavlgnek 95 
                      +++g+pv++K+++ G   G+ +ve ee++    ++a++    + +++ +   ++r +ev +l ++ 
       CCD26626.1 243 KKIGFPVMIKASEGGGGKGIRQVEREEDFIPLYHQAANEipGSPIFIMKLAgKARHLEVQLLADQY 308
                      689*************************99988888775235679999998899999999998554 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00015      0.23      39      81 ..     709     752 ..     696     767 .. 0.89

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00015
      RnfC_N  39 GapakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaie 81 
                 G+  k lv++gd+++ Gq  ae e   +++p  a  sG V+ ++
  CCD26626.1 709 GKLVKFLVENGDHIKAGQPYAEIEVmKMQMPLVAQESGVVQLLK 752
                 677899*****************986789*********998665 PP

>> GxGYxYP_N  GxGYxY sequence motif in domain of unknown function N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00016      0.24      96     192 ..      64     159 ..      56     173 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00016
                 HHHTT---EEEE-TT..--HHHHHHHHGGGS-SSEEEE--TT--SSSHHHHHHHT-EEE----TT....---HHHHHHHHTS-TT-EEEE-TTS.HHHH CS
   GxGYxYP_N  96 akelglkkelqDlrgkfeayawaldeyadklnkklivllspdkkaelrDYaiasklfvfwldskke...eetsllkkilskmpkgaivlGWgpdsEgag 191
                 +++ g+   ++ +r      +wa++++ d  + +++  ++p+   + ++Y+ ++   v    + ++   ++  l+ +i ++ + +a+  GWg +sE+ +
  CCD26626.1  64 IANNGIA-AVKEIRS---VRKWAYETFGDDRTIQFVAMATPEDLEANAEYIRMADQYVEVPGGTNNnnyANVDLIVDIAERANVDAVWAGWGHASENPH 158
                 5677887.8888998...99*********999999999998867788899977776655444444457899***********************99887 PP

                 H CS
   GxGYxYP_N 192 V 192
                 +
  CCD26626.1 159 L 159
                 6 PP

>> ATPgrasp_Ter  ATP-grasp in the biosynthetic pathway with Ter operon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00025      0.38      72     116 ..     370     415 ..     345     425 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00025
  ATPgrasp_Ter  72 ededgpkLLEiNpRasGGlgys.alaGvnlpylalklllgleteev 116
                   +de++ + LE NpR +     + +++Gvnlp   l+ ++g +++ +
    CCD26626.1 370 HDEQKFYFLELNPRLQVEHPTTeMVTGVNLPASQLQIAMGIPMHRI 415
                   577889**********9998773567*************9755444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2231 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       511  (0.0285013); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 1.11u 0.33s 00:00:01.44 Elapsed: 00:00:00.50
# Mc/sec: 13459.24
//
Query:       CCD26627.1  [L=646]
Description: hypothetical protein NDAI_0I00580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    8.3e-58  196.4 104.4    4.9e-56  190.5  49.1    5.5  3  DUF4667   Domain of unknown function (DUF4667)


Domain annotation for each model (and alignments):
>> DUF4667  Domain of unknown function (DUF4667)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4  10.8      0.22     4e+03     176     221 ..      18      65 ..       3      85 .. 0.51
   2 !   12.4  32.3   7.1e-06      0.13       2     203 ..      88     310 ..      87     322 .. 0.67
   3 !  190.5  49.1   2.8e-60   4.9e-56      54     243 .]     294     636 ..     277     636 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.22
     DUF4667 176 ssssssssssqssssesssdeessnass..sstpntqanknasldlss 221
                 sssss+s ++ +s +++++d++++n+ +   ++ +++ nkn++ +lss
  CCD26627.1  18 SSSSSNSHNNINSDNKDIDDNNNNNNNEdkEKVHERKENKNDDPNLSS 65 
                 222222222222333333333333333333445555555555555554 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 7.1e-06
     DUF4667   2 slnrPlsAhltihykqtkkssesssassesastsssssslsssksksakssskevirtvlpinikk...edlsssskhkvatsasslllstnsttnstr 97 
                 s nrPlsAhltihy+ +++++ ++++++e  +   s++s+s+s s s+++s++           ++   +d+++ + + ++ + ++  l +n++++ ++
  CCD26627.1  88 SQNRPLSAHLTIHYQIDNDNDHEDDQQKEDQE---SPRSNSYSDSISSNNSNQ-----------DQnrdQDQDQDEDQRSTGTVNTENLLQNKDHEIKK 172
                 89*************99998877776666643...344444444422222211...........11234666666666666666777777777777777 PP

     DUF4667  98 lsrsmniyD........LyQCvhss.....qsknrnsqfiarRfSeshilelknnltrkkdtetnldtakttslrtaseaa.................. 165
                   ++ n+          +            +++++++q    R++   il+++ + +++++      t  +t + +++e a                  
  CCD26627.1 173 VPDYLNLRKqeqgyqyeFK-----DqnqnqNQNQNQNQKKEQRTTIRTILNIEAEDNADERMLVGTPTTFETEQEQEQERAetitntannenkngplsy 266
                 7777777764444433333.....14454466777788888888888888888888877444333333333333333333355668899999******* PP

     DUF4667 166 ......slpslssassssssssssssqssssesssdeessnass 203
                         p+ls++ s +ss ++s+++ +  +++ +++++n+s+
  CCD26627.1 267 nlgsnpLPPPLSPSVSVKSSLNDSDFEIDIPKTIRKKMKQNQSC 310
                 *****88899999999999999999999999*******999988 PP

  == domain 3  score: 190.5 bits;  conditional E-value: 2.8e-60
     DUF4667  54 kevirtvl.................pinikk.edlsssskhkvatsasslllstnsttnstrlsrsmniyDLyQCvhss...............qsknr 119
                 + + +t++                 ++n+ + +    ++   +++  ++++++t++ttnstrls++mniyD+yQCv+ss               +sknr
  CCD26627.1 294 IDIPKTIRkkmkqnqscliqlpyliNSNLINiSRTLTERIYLKHKGTKKMMMMTTTTTNSTRLSSYMNIYDFYQCVPSSnnnkiriipilsnnyHSKNR 392
                 334444444444444444556555545555554444555556678889999************************************************ PP

     DUF4667 120 nsqfiarRfSeshilelknnltrkkdtetnldtakttslrtaseaa..................................................... 165
                 nsqfi+rRfSes   e++n++trkkd+etnldt+ktt+++ta+e+a                                                     
  CCD26627.1 393 NSQFIVRRFSES---EIPNFFTRKKDIETNLDTLKTTTIATATEPAtttttadstttpkaipksangideqkkdresqsyetnltkdllrenddklqqr 488
                 ************...9*********************************************************************************** PP

     DUF4667 166 ...........................................................slpslssassssssssssssqssssesssdeessnass.. 203
                                                                            s++slssass+ss+ss++++qss++++s+++++sn++s  
  CCD26627.1 489 krgkenpfnfqynynysndtthnfypessskprsiqtndniinpdlknkknsnkmlkinSISSLSSASSASSTSSIDTNQSSATYTSTSTMKSNQYSsf 587
                 *************************************************************************************************** PP

     DUF4667 204 .........sstpntqanknasldlsspCsRHHHRRNSvAvKFeKplYk 243
                          s+tp++q+n++as+d+s+pCsRHHHRRNS+A+KF+Kp+Yk
  CCD26627.1 588 nlnstsrrpSTTPHRQRNYSASVDISNPCSRHHHRRNSIALKFDKPRYK 636
                 ************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3147  (0.175526); expected 358.6 (0.02)
Passed bias filter:                      346  (0.0192983); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        31  (0.00172904); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.21u 0.33s 00:00:01.54 Elapsed: 00:00:00.50
# Mc/sec: 3893.20
//
Query:       CCD26628.1  [L=966]
Description: hypothetical protein NDAI_0I00590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.6e-180  598.6   0.8     9e-100  333.7   1.1    2.1  2  PFK       Phosphofructokinase


Domain annotation for each model (and alignments):
>> PFK  Phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.7   1.1    5e-104    9e-100       2     283 ..     206     513 ..     205     514 .. 0.97
   2 !  262.7   0.0     2e-82   3.6e-78       1     284 []     595     886 ..     595     886 .. 0.93

  Alignments for each domain:
  == domain 1  score: 333.7 bits;  conditional E-value: 5e-104
                 EEEEEESS--TTHHHHHHHHHHHHHHTT-EEEEETTHHHHHHTT...-EEEE-SGGGTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT--EEEE CS
         PFK   2 iailtsGGdapGmNaairavvrtaikkglevygireGfeGliee...eiekltledvsgilsegGtiLgsaRskefkeregrkkaaenlkklgidaLvv 97 
                 ia++tsGGda+GmN+ +ra+vr+ai kg++ +++ eG+eGl+++    i++ ++edv+g+++egGt +g+aR+ ef++r+gr   a++l + g+daL+v
  CCD26628.1 206 IAVMTSGGDAQGMNSNVRAIVRSAIFKGCRAFVVMEGYEGLVRGgpeYIKECSWEDVRGWSTEGGTNIGTARCLEFRQRDGRLLGAQHLIEAGVDALIV 304
                 9******************************************999777799*********************************************** PP

                 EESHHHHHHHHHHHHT..T.....................--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHHT-EEEEEES-TT-TH CS
         PFK  98 iGGdgslkganklseerkgllee.................lkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstakshkrvfvvEvmGrncGw 179
                 +GGdgsl+ga+ +++e+++l +e                 l+i+g +++idND+  td tiG+++Al++i++aid ++ ta+sh+r+fvvEvmGrncGw
  CCD26628.1 305 CGGDGSLTGADLFRSEWPSLIKEllengriskdqfqkyqhLNICGTVGSIDNDMSTTDATIGAYSALDRICKAIDYVEATANSHSRAFVVEVMGRNCGW 403
                 *******************9999**************************************************************************** PP

                 HHHHHHHHHT-SEEE-TTS---HH....HHHHHHHHHHT.T-S-EEEEEESSS..S-.....HHHHHHHHHHHHSS-EEEEE-GGGGG-S---HHHHHH CS
         PFK 180 lAlmaglaggadvilipEepfdie....eliekikklrkkgkkksiivvaEgakdkeg..iiaeelakeieektgievrvtvlGhlqrGgspsafDril 272
                 lAl ag+a++ad+i+ipE+p +      ++++ + k+r+kgk+++i++vaEga++ +   i+  +++k++ +++g+++r+t+lGh+qrGg++ a+Dr+l
  CCD26628.1 404 LALLAGIATSADYIFIPEKPATSSewqdQMCDIVAKHRSKGKRTTIVIVAEGAISADLtpISPADVHKVLVDRLGLDTRITTLGHVQRGGTAVAYDRML 502
                 *******************998878889**********99**************65557799********999************************** PP

                 HHHHHHHHHHH CS
         PFK 273 atrlGikavel 283
                 at+ G++av++
  CCD26628.1 503 ATLQGVEAVNA 513
                 *********97 PP

  == domain 2  score: 262.7 bits;  conditional E-value: 2e-82
                 EEEEEEESS--TTHHHHHHHHHHHHHHTT-EEEEETTHHHHHHTT.-EEEE-SGGGTT-TT--S-TT-----GGGGSHHHHHHHHHHHHHHT--EEEEE CS
         PFK   1 riailtsGGdapGmNaairavvrtaikkglevygireGfeGliee.eiekltledvsgilsegGtiLgsaRskefkeregrkkaaenlkklgidaLvvi 98 
                 +iai+++G++a G+N+a+ +++ +++++g+++y+i++G++Gl ++ ++++l+++d+ g++s+gG+ +g++R  +   + ++  +a  ++k+++d+Lv++
  CCD26628.1 595 KIAIVNVGAPAGGINSAVYSMATYCMSQGHKPYAINNGWSGLARHeSVRSLEWKDMIGWQSRGGSEIGTNRVTPE--QADIGMIAYYFQKYQFDGLVIV 691
                 7*****************************************88868889************************6..457******************* PP

                 ESHHHHHHHHHHHHT..T.....--EEEEEEETT---TT-S--EEHHHHHHHHHHHHHHHHHHHHHH.T-EEEEEES-TT-THHHHHHHHHHT-SEEE- CS
         PFK  99 GGdgslkganklseerkgllee.lkivgiPkTidNDipgtdytiGfdTAlntiveaidklkstaksh.krvfvvEvmGrncGwlAlmaglaggadvili 195
                 GG+++++ +++l+++r++++++ +++v+iP+T +N++pgt+y++G+dTAln ++e++d +k++a+s+  r+fvv+v+G+n+G+lA+ a+la+ga++ ++
  CCD26628.1 692 GGFEAFESLHQLERARESYPAFrIPMVLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTrGRAFVVDVQGGNSGYLATCAALAVGAQASYV 790
                 ****************9999888**************************************************************************** PP

                 TTS---HHHHHHHHHHHH.....T.T-S-E.......EEEEESSS..S-...HHHHHHHH.HHHHSS.-EEEEE-GGGGG-S---HHHHHHHHHHHHHH CS
         PFK 196 pEepfdieeliekikklr.....kkgkkks.......iivvaEgakdkegiiaeelakei.eektgi.evrvtvlGhlqrGgspsafDrilatrlGika 280
                 pEe + +e+l+++i++l      +     +       +i+ + +a++    +a +lak++ +e++g  +++ + +Gh+q+Gg ps++Dr+ atr++i+a
  CCD26628.1 791 PEEGIPLEQLQQDIETLAesfesA-----KgrgrfgkLILKSTNASK--ALSATDLAKVMtSEANGRfDAKPAYPGHVQQGGLPSPIDRTRATRFAIRA 882
                 ********9999999999666441.....22234567********85..5679999999966666646******************************* PP

                 HHHH CS
         PFK 281 vell 284
                 v+++
  CCD26628.1 883 VDFI 886
                 *975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       658  (0.0367003); expected 358.6 (0.02)
Passed bias filter:                      526  (0.0293379); expected 358.6 (0.02)
Passed Vit filter:                        45  (0.0025099); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.26s 00:00:00.96 Elapsed: 00:00:00.42
# Mc/sec: 6849.09
//
Query:       CCD26629.1  [L=481]
Description: hypothetical protein NDAI_0I00600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-41  141.1   1.4    3.6e-41  140.4   0.0    2.1  2  Inp1      Inheritance of peroxisomes protein 1


Domain annotation for each model (and alignments):
>> Inp1  Inheritance of peroxisomes protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.5      0.32   5.8e+03      43      54 ..      47      58 ..      17      78 .. 0.52
   2 !  140.4   0.0     2e-45   3.6e-41       1     136 [.     125     301 ..     125     302 .. 0.87

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.32
        Inp1 43 etllwksktert 54
                et  +ks+ ++t
  CCD26629.1 47 ETFKFKSSRKST 58
                133333333333 PP

  == domain 2  score: 140.4 bits;  conditional E-value: 2e-45
        Inp1   1 qketLFkhpnvkvisflaeg......sssssssssaeasdvdsesesse...tllwksktertiAkgpLeIyri....................pqsva 70 
                 qk +LFk++nv+v+++++++      +   ssss ++++  ds+s++s+   t+++++k+++++A+gpLeIy+i                     q+++
  CCD26629.1 125 QKISLFKYDNVQVMNCFVPIsasstrR---SSSSHSSSNFADSHSDKSDlsnTISVRIKPTSLMAQGPLEIYQIftpdissnmkgsvngngngnGQTMN 220
                 6889****************8863322...3333333333455555555667*********************************************** PP

        Inp1  71 fLsvG...sivhpiLpklqvwrvddee.....skfvlrienperywrIel.......pqeseeekelveeleevlskilqf 136
                 +Ls+G   +i+hp+Lpkl+v+++ +++     +k++++++nper+w+I++       ++ +e ++++++e+e+v+sk++qf
  CCD26629.1 221 YLSIGrnsNIIHPLLPKLKVTKLYGGSgandgYKYFINFYNPERFWEIDFlpilgndMSVNEPLQNVIKEFERVISKVCQF 301
                 ***********************544447899***********************9888899******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1802  (0.100508); expected 358.6 (0.02)
Passed bias filter:                      487  (0.0271627); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.58u 0.25s 00:00:00.83 Elapsed: 00:00:00.41
# Mc/sec: 3520.01
//
Query:       CCD26630.1  [L=390]
Description: hypothetical protein NDAI_0I00610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.3e-87  291.7   0.1    6.3e-87  291.5   0.1    1.1  1  Porin_3   Eukaryotic porin


Domain annotation for each model (and alignments):
>> Porin_3  Eukaryotic porin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.5   0.1   3.5e-91   6.3e-87       1     270 []      60     356 ..      60     356 .. 0.98

  Alignments for each domain:
  == domain 1  score: 291.5 bits;  conditional E-value: 3.5e-91
                 S---CCCCCHHH.HHHHHCCHTTTECEEEEEEEECCECCEEEEEEEETTTS.-ECEEEEEEEEETCCCEEEEEECCCSCCEEEEEECCSSTTCEEEEEE CS
     Porin_3   1 nPgtyedlgkea.kdllpkdYhfeglkldvtkktslgvaFqvshsfslgsg.kvsysfeakykdkgltltlkgntdndlsltarvneqlaeglklklsa 97 
                 nPgt+e+l+ke+ +d+++ +Y+f+gl++d++k++ l++aFq+sh+fs+gs+ +++y+f+a+++  +++l+++gn+dnd+sl+ r+n+ + +   +k+++
  CCD26630.1  60 NPGTVENLNKEVsRDVFLSQYFFTGLRADLNKAFALNPAFQTSHTFSIGSTnLPNYAFSALFA--DDNLFVQGNLDNDMSLSGRFNYGWDKTNISKANI 156
                 8**************************************************9***********..********************************** PP

                 EE-TTT--EEEEEEEEEEETTEEEEEEEEC.TC.......EEEEEEEEEEECTSTEEEEEEEEEECTTTCCEEEEEEEEEEEC......SEEEEEEEEE CS
     Porin_3  98 qltpekgkksakleldykgddftaslklgn.sk.......tpvvvasllqsvtpglalGaeavydtasgkltkyaaalsyaar......dwiaslqlln 182
                 q+++++ +++++le+dy+ +df+++lk  n +        t+v v+sllqs+tp+lalG+e++y++++ ++++ +a++sy +r      dwi+s+ql +
  CCD26630.1 157 QIANGQ-PTMCQLEQDYQASDFSINLKTLNpQFatkdgsfTGVAVGSLLQSITPQLALGLEVLYSRPQ-AIAPADAGVSYLTRyvskkqDWIFSGQL-Q 252
                 *****7.6**********************7669*********************************8.77778889*******************8.8 PP

                 TTTEEEEEEEEECCTTEEEEEEEEEETTEE.................EEEEEEEEEEEECTCEEEEEEEECTTEEEEEEEEEECTTEEEEEEEEEECCC CS
     Porin_3 183 nggaltasyyqkvsekvevgaeltlnassq.................estttlGakydldksttvkakidsngkvgllleqkLrpgvtltlsaelDhkk 264
                 + g+l as+++k++++ve+++e+tl+a++                  e++tt+Gaky++++s  +++ idsngk+g++le+k+ p++++++++e+Dh+k
  CCD26630.1 253 ASGVLVASFWRKITPNVEAAIETTLQAGMVpitdpvvgtpigiqptvEGSTTIGAKYEYRQS-IFRGIIDSNGKIGCFLERKILPTLSVLFCGEIDHFK 350
                 9*************************************************************.************************************ PP

                 TEEEEE CS
     Porin_3 265 nahkfG 270
                 n++k+G
  CCD26630.1 351 NQSKLG 356
                 *****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       345  (0.0192426); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 2934.02
//
Query:       CCD26631.1  [L=223]
Description: hypothetical protein NDAI_0I00620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.8e-92  308.4   1.6    2.1e-92  308.2   1.6    1.0  1  ERG2_Sigma1R  ERG2 and Sigma1 receptor like protein


Domain annotation for each model (and alignments):
>> ERG2_Sigma1R  ERG2 and Sigma1 receptor like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.2   1.6   1.2e-96   2.1e-92       4     208 ..       7     220 ..       4     221 .. 0.94

  Alignments for each domain:
  == domain 1  score: 308.2 bits;  conditional E-value: 1.2e-96
  ERG2_Sigma1R   4 llllvalvylldkl....leknyifdpkelqelakkaiakh.....endtkavleeivkelkkeypdelinlleeeewvfnnaGgamGamlilhaSi 91 
                   l++l+++ y+l++l    l+k++ifdp +l++++++++ kh     + +t+a+l++++++l+++y++e+in++++eewvfnnaGgamG+m+ilhaSi
    CCD26631.1   7 LVFLATTGYILKQLfttwLPKHFIFDPVTLNQICNSVLVKHdpsseHFHTEALLRDVRDALAAHYGEEYINKYSNEEWVFNNAGGAMGQMIILHASI 103
                   556666666666655555*********************99776555899*********************************************** PP

  ERG2_Sigma1R  92 tEYlilFGtavgteGhtGrhladdyftiLkGeqlaakpgelekevYkpGdvhhlkrgeakqykmeegcfaLeyarGwipsmlpFgfadtlsstlDfv 188
                   +EY+ilFGtavgteGh+G+h+a+dyftiL+Geq+aa p+++ +e+Y+pG++hhl++g+akqy+m++g+faLe+a+Gwip+mlpFgf+dt+sstlD++
    CCD26631.1 104 SEYVILFGTAVGTEGHSGVHFANDYFTILHGEQKAALPHATMPEIYTPGMTHHLPMGYAKQYSMTSGSFALELAQGWIPCMLPFGFLDTFSSTLDLY 200
                   ************************************************************************************************* PP

  ERG2_Sigma1R 189 tlyktvritaremiknllkg 208
                   tl++t ++tar+mikn++++
    CCD26631.1 201 TLWRTSYLTARDMIKNIVQN 220
                   *****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       374  (0.0208601); expected 358.6 (0.02)
Passed bias filter:                      326  (0.0181828); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.24s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1651.80
//
Query:       CCD26632.1  [L=367]
Description: hypothetical protein NDAI_0I00630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-22   79.4   0.1    2.7e-22   78.4   0.1    1.6  1  XPA_C            XPA protein C-terminus
     0.0014   18.6   0.7     0.0039   17.2   0.7    1.7  1  XPA_N            XPA protein N-terminal
  ------ inclusion threshold ------
        2.4    9.2   5.7         11    7.0   0.6    3.4  3  Cytochrome_C554  Cytochrome c554 and c-prime


Domain annotation for each model (and alignments):
>> XPA_C  XPA protein C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.1   4.6e-26   2.7e-22       1      51 []     219     269 ..     219     269 .. 0.98

  Alignments for each domain:
  == domain 1  score: 78.4 bits;  conditional E-value: 4.6e-26
       XPA_C   1 kysLiTkTeakedYLLtdedLkdrelLkflkkkNPhnstwgdMkLYlklqV 51 
                 kysL+TkTe+kedY+Ltd++L+d+el+++l+k+NPh++t+++M+L++++++
  CCD26632.1 219 KYSLLTKTECKEDYFLTDPELNDEELFHRLEKPNPHSGTFARMQLFVRCEI 269
                 8**********************9*************************97 PP

>> XPA_N  XPA protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.7   6.5e-07    0.0039       1      28 [.     184     212 ..     184     213 .. 0.93

  Alignments for each domain:
  == domain 1  score: 17.2 bits;  conditional E-value: 6.5e-07
       XPA_N   1 apkCdeCg.kefldSyLldnFdysVCDkC 28 
                 apkC eC+  +++d  L d F+++VC +C
  CCD26632.1 184 APKCVECQiNIEMDPVLNDVFKLQVCKSC 212
                 69******6689***************99 PP

>> Cytochrome_C554  Cytochrome c554 and c-prime
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.6    0.0019        11      14      57 ..     150     193 ..     147     212 .. 0.77
   2 ?   -1.0   0.4      0.59   3.5e+03       1      16 [.     208     223 ..     208     233 .. 0.71
   3 ?    2.4   0.1     0.052   3.1e+02      11      44 ..     285     316 ..     281     359 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0019
                      TTSTGGGTTGGGSTTSSHHHHHHTT--TTS--TT-TTTGGGSBS CS
  Cytochrome_C554  14 kkskhakaleslkkekkaeakkkakldpakdaeeapeClkCHat 57 
                       +sk+ k+l+ +k+e+++  +   ++ p ++ + ap+C++C++ 
       CCD26632.1 150 LGSKKQKTLDDWKREQRERKAIYENMPPPEHISLAPKCVECQIN 193
                      5678889999999888777777777888888899*******985 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.59
                      HHHHHTHHHHHHHTTS CS
  Cytochrome_C554   1 aCaeCHeeqyeswkks 16 
                      +C++C +e+ e+++  
       CCD26632.1 208 VCKSCAKEHPEKYSLL 223
                      5888888887777654 PP

  == domain 3  score: 2.4 bits;  conditional E-value: 0.052
                      HHHTTSTGGGTTGGGSTTSSHHHHHHTT--TTS- CS
  Cytochrome_C554  11 eswkkskhakaleslkkekkaeakkkakldpakd 44 
                      ++w++ +  k+++  kk + +++k+   ++++++
       CCD26632.1 285 KEWQRREEGKSMRREKKYQ-QQIKQMR-IKTRAQ 316
                      5799999999998766544.4544433.333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1343  (0.0749066); expected 358.6 (0.02)
Passed bias filter:                      574  (0.0320152); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.24s 00:00:00.76 Elapsed: 00:00:00.41
# Mc/sec: 2658.84
//
Query:       CCD26633.1  [L=262]
Description: hypothetical protein NDAI_0I00640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-96  321.7   0.3      2e-96  321.5   0.3    1.0  1  Rot1      Chaperone for protein-folding within the ER, fungal


Domain annotation for each model (and alignments):
>> Rot1  Chaperone for protein-folding within the ER, fungal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  321.5   0.3  1.1e-100     2e-96       1     209 []      29     259 ..      29     259 .. 0.96

  Alignments for each domain:
  == domain 1  score: 321.5 bits;  conditional E-value: 1.1e-100
        Rot1   1 lvGtWssksnkvltGpgfydpveekliePsltGisysFteDGfyEealyrvvanpknpsCpkavlqfqHGtyeleangslvltPievDGRqllsdpCk. 98 
                 l+GtWssksn+v+tGpgfydpv+e liePsl+GisysFteDG++Eea+y+v++npk+p+Cp a+l++qHG+ye+ +ng+l+l+PievDGRql+sdpC+ 
  CCD26633.1  29 LYGTWSSKSNQVFTGPGFYDPVDELLIEPSLPGISYSFTEDGWFEEATYQVSGNPKDPTCPMASLIYQHGKYEILSNGTLILHPIEVDGRQLFSDPCNd 127
                 79************************************************************************************************7 PP

        Rot1  99 kkkstytrynqselfkkyevlvdeyhgvkrlnlyqfdgspmqplylaykppqmlPtetlnptekase.......................kvkrslese 174
                 +  stytrynq+e+f++++v++d+yhgv+ l+lyqfd+spmqplylaykpp+mlPtetlnpt+++++                        vkrsl  e
  CCD26633.1 128 DGISTYTRYNQTETFHSFSVQIDSYHGVWSLQLYQFDQSPMQPLYLAYKPPMMLPTETLNPTDTSNTventgtvdgasetgslqkrslrsMVKRSL--E 224
                 789**************************************************************999**************77766666666666..8 PP

        Rot1 175 eklkknavkkkeeslnadklwwvgvlllavgsval 209
                 +++k++a k ++  ++++ +w+++ ++l++gs+++
  CCD26633.1 225 NRHKTSARKIQKGFWSSSIFWYIASGMLGLGSILF 259
                 999999999999********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       494  (0.0275531); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 2054.92
//
Query:       CCD26634.1  [L=681]
Description: hypothetical protein NDAI_0I00650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-19   69.8   3.2    2.3e-19   69.8   3.2    2.8  2  Microtub_bd  Microtubule binding
     0.0068   16.7   6.7     0.0068   16.7   6.7    2.6  2  ATG16        Autophagy protein 16 (ATG16)
  ------ inclusion threshold ------
      0.023   15.0   0.2        8.1    6.8   0.0    2.9  3  LigD_N       DNA polymerase Ligase (LigD)
        5.6    7.5  31.0       0.85   10.1   3.0    5.2  4  NPV_P10      Nucleopolyhedrovirus P10 protein


Domain annotation for each model (and alignments):
>> Microtub_bd  Microtubule binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.2   5.2         4   1.8e+04      63      63 ..     293     293 ..     160     372 .. 0.65
   2 !   69.8   3.2   5.2e-23   2.3e-19       1     149 []     385     525 ..     385     525 .. 0.93

  Alignments for each domain:
  == domain 1  score: -5.2 bits;  conditional E-value: 4
                  H CS
  Microtub_bd  63 e 63 
                  e
   CCD26634.1 293 E 293
                  1 PP

  == domain 2  score: 69.8 bits;  conditional E-value: 5.2e-23
                  HHHHHHHHHHCHHHHHHHCTB-EEEEEEECCCS-T..EEEETTT.......TTTEEEE-SEEEECTT..HCCCCCCCCHHHHHHHH.TT--EEEEEEE CS
  Microtub_bd   1 lekeetlRrkleNtiqelkGniRvfarvrpelesek.akikfpe....eekkkkkefsFdrvfeses..eqeevfeeisqlvqsal.dgynvcifayg 90 
                  l++e+++R++leN ++e++++iR+fa +++++ se+ ++i++++       k+++   ++++++ ++  e++++ ++++++++  + +++++++f+++
   CCD26634.1 385 LRQERMTRKRLENIVDETNCKIRCFAFIDENKLSERnFQIDYMNrtitIPGKRNNPLFINKIIPINKmsESDFLLQDYQMYYDLKInKKTDFSLFTIS 482
                  689****************************9995559****9777887789999********9988879999*************999********* PP

                  S................ST-HCHHHHHHHHHHCCTSCCCCEEEEEEEEEEESS-EEETT CS
  Microtub_bd  91 qTGsGKtyTmegeeeeagmipraveeifetiselkekgwkyeielqfveiynekvqDlL 149
                  +             ++ +++++++ e+++++s +     +y++ +q+v+i n++v+D+L
   CCD26634.1 483 N-------------NNGDTWDSLRYEMLRFMSIN---YPSYTTLIQHVFIANDSVTDIL 525
                  *.............7899**************99...68******************98 PP

>> ATG16  Autophagy protein 16 (ATG16)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   6.7   1.5e-06    0.0068     148     182 ..     228     262 ..     192     263 .. 0.74
   2 ?   -0.1  14.7      0.21   9.3e+02      75     163 ..     286     374 ..     271     402 .. 0.81

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 1.5e-06
       ATG16 148 ekeklvqdlqDElsaLqlqlnqaEeklrklekENk 182
                 e  k  qd+qDE+++L+lqln + ek +k+++EN+
  CCD26634.1 228 ENMKPSQDIQDEINSLNLQLNDVNEKFNKIKDENE 262
                 4455567***************************7 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.21
       ATG16  75 kiqsleqklaqlreelaelyksrgelaqrllelneelqkleeklkedeerlaeleaeraaletklkdreeelrekeklvqdlqDElsaL 163
                  +++l+++   l+ el+e++ ++++++ ++ +  +e+q  ++++ + ++ + + ++ + +l+++    + +l+e++k + ++q+  s+ 
  CCD26634.1 286 PMSALQNEQEHLNLELKETQLKCETFEGKISNNDKEIQSMNQEILAIQNLITKTNELNISLRQNKIISQSKLNEQNKSLAKVQEKASSI 374
                 56788888899999999999999999999999999999999999999999999999999999999999999999999999998876665 PP

>> LigD_N  DNA polymerase Ligase (LigD)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0    0.0068        31      32      71 ..      65     104 ..      54     132 .. 0.79
   2 ?    6.8   0.0    0.0018       8.1       9      62 ..     265     321 ..     258     329 .. 0.85
   3 ?   -3.1   0.0       2.2     1e+04       8      28 ..     464     484 ..     462     512 .. 0.73

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0068
                 STTSEEEEEEEEEE-GGGGGEEEEE-TTSTT-EEEEEEEE CS
      LigD_N  32 dpnskrlAvetedhpleyadfegliekgeygaGsvliwDt 71 
                 + +s+r+A+     +l++   +++ie++++  G+vl ++ 
  CCD26634.1  65 TMSSSRIAIPSSSRRLSFDPSNNNIERKSNTPGRVLTYNG 104
                 567899*****************************98853 PP

  == domain 2  score: 6.8 bits;  conditional E-value: 0.0018
                 EEEEEEEETTEEEEEEETT---SST...TSEEEEEEEEEE-GGGGGEEEEE-TTSTT CS
      LigD_N   9 HYDlrLeidevlsswavpkglpedp...nskrlAvetedhpleyadfegliekgeyg 62 
                  +D+ +e++e  + +   k++p+++   ++++l  e+++ +l+  +feg+i++++++
  CCD26634.1 265 CHDFEIELKEEFEKFKTEKNIPMSAlqnEQEHLNLELKETQLKCETFEGKISNNDKE 321
                 56*******************997744477788******************998765 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 2.2
                 EEEEEEEEETTEEEEEEETT- CS
      LigD_N   8 lHYDlrLeidevlsswavpkg 28 
                 + YDl+++ +   s + + ++
  CCD26634.1 464 MYYDLKINKKTDFSLFTISNN 484
                 568888887777777776655 PP

>> NPV_P10  Nucleopolyhedrovirus P10 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.2     0.016        73      25      56 ..     154     185 ..     127     213 .. 0.80
   2 ?   10.1   3.0   0.00019      0.85      23      63 ..     220     259 ..     212     262 .. 0.86
   3 ?    4.8   7.0    0.0088        40      12      64 ..     321     377 ..     314     384 .. 0.80
   4 ?    1.3   0.8      0.11   4.9e+02      25      62 ..     519     557 ..     509     570 .. 0.71

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.016
     NPV_P10  25 qqvddvqenlpdvtelnekLdaqsaqLaelet 56 
                 ++++d+++ +++++el+ kLd    +L+++  
  CCD26634.1 154 NKLNDITSIMRTIHELSGKLDMRCMELDTIGR 185
                 57889999999999999999999999888865 PP

  == domain 2  score: 10.1 bits;  conditional E-value: 0.00019
     NPV_P10  23 lqqqvddvqenlpdvtelnekLdaqsaqLaeletkvenIqd 63 
                  +q+++dv++  p  +++++++++++ qL+++++k ++I+d
  CCD26634.1 220 CEQKLNDVENMKPS-QDIQDEINSLNLQLNDVNEKFNKIKD 259
                 56889999765555.99**********************97 PP

  == domain 3  score: 4.8 bits;  conditional E-value: 0.0088
     NPV_P10  12 dikavddkVdalqqqv...ddvqenlpdvtel.nekLdaqsaqLaeletkvenIqdi 64 
                 +i+ +++ + a+q+ +   ++++  l++ + + ++kL++q+++La++++k ++I++i
  CCD26634.1 321 EIQSMNQEILAIQNLItktNELNISLRQNKIIsQSKLNEQNKSLAKVQEKASSIEKI 377
                 688889999999987755577788888866663469*************99988877 PP

  == domain 4  score: 1.3 bits;  conditional E-value: 0.11
     NPV_P10  25 qqvddv.qenlpdvtelnekLdaqsaqLaeletkvenIq 62 
                 ++v+d+ +++  +  ++n  + a s +L++l+  +++I+
  CCD26634.1 519 DSVTDIlRNDQSEAGNINIDIKANSISLDSLQVDLKKID 557
                 566664155566677899999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2597  (0.144849); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.76u 0.29s 00:00:01.05 Elapsed: 00:00:00.44
# Mc/sec: 4636.46
//
Query:       CCD26635.1  [L=228]
Description: hypothetical protein NDAI_0I00660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-20   71.7   2.5    4.5e-20   71.7   2.5    2.6  3  V-SNARE_C  Snare region anchored in the vesicle membrane C-te
    1.1e-15   57.8   4.6    1.1e-15   57.8   4.6    2.3  3  V-SNARE    Vesicle transport v-SNARE protein N-terminus
  ------ inclusion threshold ------
       0.16   11.9   7.1      0.076   12.9   2.3    2.4  2  Sec20      Sec20
        0.4   10.9   9.9      0.082   13.1   1.0    2.7  2  FliJ       Flagellar FliJ protein
       0.73   10.1   2.7        1.8    8.8   0.0    2.7  3  YqjK       YqjK-like protein


Domain annotation for each model (and alignments):
>> V-SNARE_C  Snare region anchored in the vesicle membrane C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.095   3.4e+02      51      63 ..      30      42 ..      21      56 .. 0.69
   2 ?   -2.4   0.1       1.7   6.3e+03      11      26 ..     113     129 ..     109     133 .. 0.55
   3 !   71.7   2.5   1.3e-23   4.5e-20       3      65 ..     137     199 ..     135     200 .. 0.98

  Alignments for each domain:
  == domain 1  score: 1.6 bits;  conditional E-value: 0.095
   V-SNARE_C 51 rlgksnsiLrsik 63
                +l+  ns+L+ i+
  CCD26635.1 30 QLPQRNSTLKQIE 42
                5666666666665 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
   V-SNARE_C  11 knShrivdet.isiGaa 26 
                 +n+++++d t +++ ++
  CCD26635.1 113 NNNNNGMDGTtEEQRQQ 129
                 56666666641444444 PP

  == domain 3  score: 71.7 bits;  conditional E-value: 1.3e-23
   V-SNARE_C   3 llresdrlknShrivdetisiGaailedLhsQretLkrarsklhnvanrlgksnsiLrsikrR 65 
                 l+++ d+lk+++r+++et++iG++i++dL+sQretL+++r++l +++++++ks ++L+ +++R
  CCD26635.1 137 LQKSGDKLKDASRLANETEGIGSQIMMDLRSQRETLENSRQTLFQADSYVDKSIRTLKVMSTR 199
                 89***********************************************************99 PP

>> V-SNARE  Vesicle transport v-SNARE protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   4.6     3e-19   1.1e-15       1      74 [.      12      89 ..      11      94 .. 0.84
   2 ?   -1.2   0.1      0.77   2.8e+03      54      64 ..     125     135 ..     107     155 .. 0.54
   3 ?   -1.2   0.0      0.76   2.7e+03      19      35 ..     171     187 ..     157     198 .. 0.54

  Alignments for each domain:
  == domain 1  score: 57.8 bits;  conditional E-value: 3e-19
     V-SNARE  1 fkellaeiksklarlsslageerkaalreiekkldeaeelldqMelEvrnlps...serasykaklreykselkk.lk 74
                f++ +++  ++l++++ ++  +r+++l++ie++ de+ +l dqM++E++n  s   ++ra ykaklr+yk+++++ +k
  CCD26635.1 12 FQTSFEQTINALKGAPAQQLPQRNSTLKQIEEQKDELLDLTDQMDIEINNSMSmnpNDRAIYKAKLRQYKKDIESqIK 89
                566677777778888878778****************************9955556****************987555 PP

  == domain 2  score: -1.2 bits;  conditional E-value: 0.77
     V-SNARE  54 serasykaklr 64 
                  +r++++a   
  CCD26635.1 125 EQRQQMLANHA 135
                 55555555444 PP

  == domain 3  score: -1.2 bits;  conditional E-value: 0.76
     V-SNARE  19 ageerkaalreiekkld 35 
                 + e  +++l ++++++d
  CCD26635.1 171 TLENSRQTLFQADSYVD 187
                 22444555555555555 PP

>> Sec20  Sec20
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.094   3.4e+02      18      45 ..      28      55 ..      13      83 .. 0.78
   2 ?   12.9   2.3   2.1e-05     0.076      12      89 ..     146     223 ..     123     226 .. 0.88

  Alignments for each domain:
  == domain 1  score: 1.2 bits;  conditional E-value: 0.094
       Sec20 18 sqevqqSeenleeldastkslekleeey 45
                +q+  q + +l++++++  +l +l ++ 
  CCD26635.1 28 AQQLPQRNSTLKQIEEQKDELLDLTDQM 55
                5677777888888888888888887765 PP

  == domain 2  score: 12.9 bits;  conditional E-value: 2.1e-05
       Sec20  12 aisqllsqevqqSeenleeldastkslekleeeykqvedvlsrskklvkklerrdktdkllvflalglflacvvyvvk 89 
                 + s+l  ++     + +++l+++ ++le+  + ++q ++ + +s + +k++  r  ++k++ +  ++ +++ ++ v++
  CCD26635.1 146 DASRLANETEGIGSQIMMDLRSQRETLENSRQTLFQADSYVDKSIRTLKVMSTRLIANKFISYAIIAVLILLILLVLF 223
                 555555555555567799*********************************************999999999998886 PP

>> FliJ  Flagellar FliJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.0   2.3e-05     0.082       4      64 ..      28      87 ..      26      97 .. 0.96
   2 ?    1.2   2.2      0.11     4e+02      26      57 ..     142     172 ..     109     201 .. 0.46

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 2.3e-05
        FliJ  4 areLaeaqrelqqaeekleeleqyrqeyqkqlsgeaqglsaaelrnyqafisaldeaiaqq 64
                a++L + +  l+q ee+ +el +  +++  ++++++  +++++  +y+a +++ ++ i++q
  CCD26635.1 28 AQQLPQRNSTLKQIEEQKDELLDLTDQMDIEINNSM-SMNPNDRAIYKAKLRQYKKDIESQ 87
                79999*******************************.*********************998 PP

  == domain 2  score: 1.2 bits;  conditional E-value: 0.11
        FliJ  26 qyrqeyqkqlsgeaqglsaaelrnyqafisal 57 
                 + +++  ++l++e++g+  + ++ +++++++l
  CCD26635.1 142 DKLKDA-SRLANETEGIGSQIMMDLRSQRETL 172
                 222222.2222222233333333333333332 PP

>> YqjK  YqjK-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1      0.78   2.8e+03       3      25 ..      39      54 ..      38      61 .. 0.56
   2 ?   -0.3   0.1      0.37   1.3e+03       6      20 ..     124     138 ..     121     146 .. 0.79
   3 ?    8.8   0.0   0.00051       1.8       6      41 ..     166     201 ..     162     221 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.78
        YqjK  3 aqieqQRldLaqaaepwekalap 25
                +qie+Q       ++++++ ++ 
  CCD26635.1 39 KQIEEQ-------KDELLDLTDQ 54
                455555.......5555555554 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.37
        YqjK   6 eqQRldLaqaaepwe 20 
                 e+QR+++ ++ + ++
  CCD26635.1 124 EEQRQQMLANHAILQ 138
                 79****998876665 PP

  == domain 3  score: 8.8 bits;  conditional E-value: 0.00051
        YqjK   6 eqQRldLaqaaepwekalapvDrgwqtlrslrkhli 41 
                 ++QR+ L++  +++ +a   vD++++tl+ + + li
  CCD26635.1 166 RSQRETLENSRQTLFQADSYVDKSIRTLKVMSTRLI 201
                 68**************************98877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1647  (0.0918623); expected 358.6 (0.02)
Passed bias filter:                      622  (0.0346924); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 1591.30
//
Query:       CCD26636.1  [L=1085]
Description: hypothetical protein NDAI_0I00670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.4e-07   28.1  15.4      7e-06   25.1   1.3    4.8  6  Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domai
  ------ inclusion threshold ------
      0.011   14.5   0.0      0.023   13.5   0.0    1.5  1  DUF2207         Predicted membrane protein (DUF2207)


Domain annotation for each model (and alignments):
>> Glyco_hydro_63  Glycosyl hydrolase family 63 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0     0.087   7.8e+02     390     407 ..     386     403 ..     367     407 .. 0.85
   2 ?   -3.4   0.2      0.33     3e+03      90     113 ..     478     501 ..     470     512 .. 0.78
   3 ?   -4.0   0.0      0.49   4.4e+03     186     207 ..     555     576 ..     528     584 .. 0.65
   4 ?   -0.5   0.0     0.045   4.1e+02     253     291 ..     612     648 ..     602     719 .. 0.70
   5 !   25.1   1.3   7.9e-10     7e-06     361     427 ..     766     851 ..     759     860 .. 0.67
   6 !    8.3   0.1   9.2e-05      0.82     459     487 ..     915     943 ..     908     947 .. 0.86

  Alignments for each domain:
  == domain 1  score: -1.5 bits;  conditional E-value: 0.087
                     TSTTTT-.....TT-SSS CS
  Glyco_hydro_63 390 ksslygkrntehdenYWr 407
                      +s++ kr+ e de YWr
      CCD26636.1 386 FDSIFDKREQEADEFYWR 403
                     4789*************9 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.33
                     B-SEEHHHHHHHHHHHHHH-HHHH CS
  Glyco_hydro_63  90 FPRGFlWDeGFhqllilkwdvdlt 113
                     +P    WD  Fh +++   d +++
      CCD26636.1 478 YPFFASWDTAFHCIPLAMIDPEFA 501
                     565567**********99999876 PP

  == domain 3  score: -4.0 bits;  conditional E-value: 0.49
                     HHHHHHHHHHHHHHHHHHHHHT CS
  Glyco_hydro_63 186 leflkklyprlkkwfewfrktq 207
                       fl++++ +l   f+w+ + +
      CCD26636.1 555 RVFLERVFQKLLLNFTWWVNRK 576
                     4699999***999999987765 PP

  == domain 4  score: -0.5 bits;  conditional E-value: 0.045
                     HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH CS
  Glyco_hydro_63 253 vDlrsWvalaakslksiaellgeeeekekyaktekelse 291
                      D   W+a+++  + +ia  l +e+    y+++++++ e
      CCD26636.1 612 ADSTGWMAFFSLQMLNIALELAKENPV--YEDIASKFFE 648
                     578899999999999999888887765..5555555444 PP

  == domain 5  score: 25.1 bits;  conditional E-value: 7.9e-10
                     T-THHHHHHHHHH-TTTTEETTEEBSB-TTSTTTT-.....TT-S...................SSS-B-HHHHHHHHHHHHHH-- CS
  Glyco_hydro_63 361 dsekleklldlikdpeelwsdyGlrslskksslygkrntehdenY...................WrgpiWininylilsalkhysk 427
                     + ++l+++l+ + d++e+ s+yG+rslsk ++ +  +   h + Y                   WrgpiW+  n+l++++l++++ 
      CCD26636.1 766 NKDRLQAILTRMLDENEFLSSYGIRSLSKYHEKHPFEMDVHGQHYkvqylpgesdsgmfggnsnWRGPIWLATNFLLIESLQRFYL 851
                     5679************************976543222222222222222222333333333334******************9985 PP

  == domain 6  score: 8.3 bits;  conditional E-value: 9.2e-05
                     SS--SEE-TTT--EESSSS-TTGGGGHHH CS
  Glyco_hydro_63 459 GfvweqYddktGkgkgakeFtGWtslvvl 487
                       ++e +d  tG+g ga++  GWt+lv  
      CCD26636.1 915 VTFFEYFDGDTGRGLGASHQCGWTALVAK 943
                     5689**********************986 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.6e-06     0.023     154     209 ..     345     404 ..     315     410 .. 0.81

  Alignments for each domain:
  == domain 1  score: 13.5 bits;  conditional E-value: 2.6e-06
     DUF2207 154 vtftarnlppgeglevrvlfpt.n.narktsgnkldeilkeeqk...ntreraarlslall 209
                  +++ +n+pp+++++vr  f t + +++   +n+ + i + e +    +re++a+++++++
  CCD26636.1 345 AVYHFKNIPPNDYVTVRYKF-TnDsENKIFPTNDISIIDEDEFDsifDKREQEADEFYWRI 404
                 3899****************.655799999**************99988888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1085 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       556  (0.0310112); expected 358.6 (0.02)
Passed bias filter:                      330  (0.0184059); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.27s 00:00:00.98 Elapsed: 00:00:00.43
# Mc/sec: 7499.04
//
Query:       CCD26637.1  [L=196]
Description: hypothetical protein NDAI_0I00680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1372  (0.0765241); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.25s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 1433.39
//
Query:       CCD26638.1  [L=65]
Description: hypothetical protein NDAI_0I00690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.9e-20   72.8   6.8    2.1e-20   72.7   6.8    1.1  1  MTCP1     Mature-T-Cell Proliferation I type
     0.0036   17.4   3.5     0.0036   17.4   3.5    1.9  2  CHCH      CHCH domain
  ------ inclusion threshold ------
      0.022   15.1   2.7      0.022   15.1   2.7    1.9  2  COX17     Cytochrome C oxidase copper chaperone (COX17)
       0.04   13.9   3.1      0.065   13.3   3.1    1.3  1  CX9C      CHCH-CHCH-like Cx9C, IMS import disulfide relay-sys


Domain annotation for each model (and alignments):
>> MTCP1  Mature-T-Cell Proliferation I type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   6.8   4.8e-24   2.1e-20      11      62 .]       3      54 ..       1      54 [. 0.98

  Alignments for each domain:
  == domain 1  score: 72.7 bits;  conditional E-value: 4.8e-24
       MTCP1 11 dCLqknnYneskCekvieaLyeCCkkfykengedaksvsCpkpsllrlklkq 62
                dC  knnY+eskC+k+i++Ly+CC+kfyken+++a+s++Cp p+ll lk++q
  CCD26638.1  3 DCVLKNNYDESKCAKLIDELYQCCSKFYKENSNEARSPCCPLPDLLDLKMEQ 54
                8*************************************************97 PP

>> CHCH  CHCH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   3.5   8.1e-07    0.0036       8      32 ..       1      25 [.       1      28 [. 0.93
   2 ?    0.1   0.1      0.21   9.6e+02      13      22 ..      31      41 ..      30      43 .. 0.63

  Alignments for each domain:
  == domain 1  score: 17.4 bits;  conditional E-value: 8.1e-07
                HHHHHHHCTSSTTTTHHHHHHHHHH CS
        CHCH  8 ylkClkdnsdefskCrkefeafkeC 32
                +++C  +n+++ skC k+++++ +C
  CCD26638.1  1 MIDCVLKNNYDESKCAKLIDELYQC 25
                689********************** PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.21
                HHCTSS.TTTT CS
        CHCH 13 kdnsde.fskC 22
                k+ns+e  s C
  CCD26638.1 31 KENSNEaRSPC 41
                78888874444 PP

>> COX17  Cytochrome C oxidase copper chaperone (COX17)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   2.7     5e-06     0.022      18      43 ..       3      28 ..       3      30 .. 0.90
   2 ?   -0.7   0.3      0.42   1.9e+03       5       7 ..      40      42 ..      35      46 .. 0.73

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 5e-06
       COX17 18 eCilesgaeeekCkelieahkaCmrs 43
                +C+l+++ +e+kC++li++  +C  +
  CCD26638.1  3 DCVLKNNYDESKCAKLIDELYQCCSK 28
                7******9999********9999765 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.42
       COX17  5 pCC 7 
                pCC
  CCD26638.1 40 PCC 42
                899 PP

>> CX9C  CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   3.1   1.5e-05     0.065      17      41 ..       3      27 ..       2      28 .. 0.94

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 1.5e-05
        CX9C 17 kCvssnqswpekCkeqkkeLakCik 41
                +Cv +n+ +++kC+++ +eL +C +
  CCD26638.1  3 DCVLKNNYDESKCAKLIDELYQCCS 27
                6**********************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       615  (0.034302); expected 358.6 (0.02)
Passed bias filter:                      363  (0.0202465); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.23s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 507.38
//
Query:       CCD26639.1  [L=100]
Description: hypothetical protein NDAI_0I00700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.2e-37  126.3   4.0    4.7e-37  126.1   4.0    1.0  1  Ribosomal_L36e  Ribosomal protein L36e
  ------ inclusion threshold ------
      0.083   13.0   0.1      0.097   12.8   0.1    1.2  1  TetR_C_9        Tetracyclin repressor-like, C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_L36e  Ribosomal protein L36e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   4.0   5.2e-41   4.7e-37       2      96 .]       5      99 ..       4      99 .. 0.98

  Alignments for each domain:
  == domain 1  score: 126.1 bits;  conditional E-value: 5.2e-41
  Ribosomal_L36e  2 sglavglnkGhkvtknvsklrpsrrkgrltkrtkfvrdiirevaGfapyerrvmellkvskdKralKfaKkrlgthirakrKreelsnvlaamrk 96
                    sg+avglnkG kvt+ + +++ s +kg  ++rtkfvr+++re+aG+apyerr+++l+++s +Kra+K+aKkrlg+++rak+K+ee++n++aa+r+
      CCD26639.1  5 SGIAVGLNKGKKVTSMTPAPKISYKKGVSSNRTKFVRSLVREIAGLAPYERRLVDLIRNSGEKRARKVAKKRLGSFKRAKAKVEEMNNIIAASRR 99
                    79******************************************************************************************996 PP

>> TetR_C_9  Tetracyclin repressor-like, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   1.1e-05     0.097      23      59 ..      52      87 ..      33      99 .. 0.79

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.1e-05
                TTHHHHHHHHHHHS-HHHHHHHHHHHTHHHHHHHHHH CS
    TetR_C_9 23 pylyrllaalvrdadeeeakdiadfyllplaraaqrl 59
                py  r l+ l+r++ e+ a+++a+  l  ++ra  ++
  CCD26639.1 52 PYE-RRLVDLIRNSGEKRARKVAKKRLGSFKRAKAKV 87
                664.66789*********************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       693  (0.0386525); expected 358.6 (0.02)
Passed bias filter:                      421  (0.0234815); expected 358.6 (0.02)
Passed Vit filter:                        17  (0.000948185); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.25s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 785.69
//
Query:       CCD26640.1  [L=286]
Description: hypothetical protein NDAI_0I00710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.8e-20   71.5   1.0    9.8e-20   70.5   1.0    1.5  1  Ribosomal_L28  Ribosomal L28 family


Domain annotation for each model (and alignments):
>> Ribosomal_L28  Ribosomal L28 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   1.0   5.5e-24   9.8e-20       4      60 .]      77     134 ..      75     134 .. 0.94

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 5.5e-24
                    TTT-.-----------S-..-SSS-BTTEEEEEEEE.TTTEEEEEEEEHHHHHH--.. CS
  Ribosomal_L28   4 eltG.kkpqfGnnvshsknkTkRtwkPNlqkvrlwseelgrkvrikvstkcLRtidkk 60 
                    +l+G   +q+Gn++s+sk+kT+R+w+PN+ k+ lwse+lgr+++ik++tk+L+ti k+
     CCD26640.1  77 GLYGgSFVQYGNSISESKQKTRRRWLPNIVKKGLWSETLGRNISIKLTTKVLKTISKE 134
                    5677799************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       478  (0.0266607); expected 358.6 (0.02)
Passed bias filter:                      322  (0.0179597); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.26s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 2067.08
//
Query:       CCD26641.1  [L=749]
Description: hypothetical protein NDAI_0I00720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.8e-23   81.9   0.6    4.8e-23   81.9   0.6    2.2  2  RabGAP-TBC  Rab-GTPase-TBC domain


Domain annotation for each model (and alignments):
>> RabGAP-TBC  Rab-GTPase-TBC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.6   2.7e-27   4.8e-23      48     213 ..     330     500 ..     316     502 .. 0.88
   2 ?   -3.8   1.0      0.45   8.1e+03      37      59 ..     667     689 ..     648     713 .. 0.50

  Alignments for each domain:
  == domain 1  score: 81.9 bits;  conditional E-value: 2.7e-27
  RabGAP-TBC  48 sqIkkDvprtfp.esesfknkqgqnqLeriLkaysiynp.evgYcqGmndivapll..lvsldeeeaFwcfvsLlekyklrdlytsslpglkrklkvle 142
                  +I+kD  ++f   ++  +n++ +++++ri+ ay + n+  ++Y   m   vap+l  + + de ++F +f++L++ y+l+ ly ++  g+   l+   
  CCD26641.1 330 CTISKDEYNSFIqGDTDNNNNDDSSKVRRIIDAYLKSNNnLISYSSEMDSYVAPILeaCSNDDELHTFSLFTKLMDGYGLKGLYHNN-VGMGLLLYYYG 427
                 679999999999455899999*************99877589**************9777779999********************9.59********* PP

  RabGAP-TBC 143 ellkkkdpklykhlkeegldlelfaikwfltlflrefpletvl..rlwD.lllegekfvllrvala.ilklleee 213
                 + l+ ++p+ly++l + g++++++a +wflt+f ++++++ ++  r++D +++eg  ++l+r+a++ ++k+  ++
  CCD26641.1 428 RSLEMNCPDLYNYLIKVGIKSNMYAKDWFLTCFGNVLKFDSLCkaRILDvIFAEGL-NCLVRFAVIpMIKNE-SK 500
                 ***************************************8876227***8888999.559999999677654.44 PP

  == domain 2  score: -3.8 bits;  conditional E-value: 0.45
  RabGAP-TBC  37 klekseeskelsqIkkDvprtfp 59 
                 ++ +++++ + +++++ ++ t++
  CCD26641.1 667 QKAQNNDDAIPKKLEQEIEATLK 689
                 22223333334444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1876  (0.104635); expected 358.6 (0.02)
Passed bias filter:                      444  (0.0247643); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.67u 0.27s 00:00:00.94 Elapsed: 00:00:00.42
# Mc/sec: 5350.62
//
Query:       CCD26642.1  [L=331]
Description: hypothetical protein NDAI_0I00730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
     0.0046   17.3   0.1       0.22   11.9   0.0    2.4  2  DDE_Tnp_1_5  Transposase DDE domain
  ------ inclusion threshold ------
      0.011   15.7   0.0      0.022   14.8   0.0    1.5  1  DUF4911      Domain of unknown function (DUF4911)
       0.11   12.7   0.1        3.8    7.8   0.0    2.5  2  DotA         Phagosome trafficking protein DotA


Domain annotation for each model (and alignments):
>> DDE_Tnp_1_5  Transposase DDE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   3.6e-05      0.22      51      92 ..      16      58 ..       6      68 .. 0.89
   2 ?    2.8   0.0     0.024   1.4e+02       7      21 ..     213     227 ..     210     246 .. 0.77

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
  DDE_Tnp_1_5 51 plRqlqGfvqs.llklaglellvpdystlsrraktlevkipvk 92
                  lRq+  +++s l  l++ +l+vp  st+ rr++++  +ip+ 
   CCD26642.1 16 QLRQVGKLIDSrLTGLINRHLKVPPASTINRRSEHIPARIPIP 58
                 69********97899********************99888865 PP

  == domain 2  score: 2.8 bits;  conditional E-value: 0.024
  DDE_Tnp_1_5   7 tiwldeeaiaawkek 21 
                  t +ld++++++w+++
   CCD26642.1 213 TTFLDHDMVSQWEKH 227
                  779*********544 PP

>> DUF4911  Domain of unknown function (DUF4911)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   3.6e-06     0.022      10      54 ..     241     283 ..     232     285 .. 0.88

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 3.6e-06
     DUF4911  10 flkfIlEaydgLavvttvdkkkGlvrirttpdtkeellelLesLk 54 
                  +  I+E y+ L + +   +k+G++ri+++  t  e+++l+++L+
  CCD26642.1 241 SISNIFETYGSLPITSS--NKDGVIRIHFPNATVNETENLISTLD 283
                 5789*************..**********************9997 PP

>> DotA  Phagosome trafficking protein DotA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00064       3.8      33      64 ..       5      38 ..       2      54 .. 0.73
   2 ?    2.1   0.1     0.036   2.2e+02      35      61 ..     155     185 ..     141     223 .. 0.68

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.00064
        DotA 33 eLCeWlggdatavkqvislingstv..asskikt 64
                +L +Wl+  +++++qv +li+   +   ++++k 
  CCD26642.1  5 NLTKWLNVTKKQLRQVGKLIDSRLTglINRHLKV 38
                799******************8877663333333 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.036
        DotA  35 CeWlggdatavkqvislingstv....assk 61 
                  +Wl +++ +v+ +++l+n  ++    ++++
  CCD26642.1 155 VKWLISSSFNVSPMKKLVNDYKMhqlmKQQA 185
                 58999999**********9988855532222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       665  (0.0370907); expected 358.6 (0.02)
Passed bias filter:                      514  (0.0286686); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2411.01
//
Query:       CCD26643.1  [L=1033]
Description: hypothetical protein NDAI_0I00740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-14   51.5  13.6    6.9e-14   51.5  13.6    4.2  5  Fungal_trans  Fungal specific transcription factor domain
      2e-10   40.6  11.8      4e-10   39.7  11.8    1.5  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain
    1.8e-08   34.4   0.4    1.4e-07   31.5   0.4    2.7  1  Gal4_dimer    Gal4-like dimerisation domain
  ------ inclusion threshold ------
       0.51   10.4  18.6      0.073   13.1   7.2    3.5  2  SUIM_assoc    Unstructured region C-term to UIM in Ataxin3


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.4      0.21   9.6e+02     179     248 ..     115     207 ..      53     221 .. 0.81
   2 !   51.5  13.6   1.5e-17   6.9e-14       1     208 [.     242     466 ..     242     530 .. 0.71
   3 ?    0.1   3.5     0.072   3.2e+02       4     227 ..     533     614 ..     530     657 .. 0.57
   4 ?   -3.1   0.2      0.68     3e+03     199     221 ..     714     730 ..     685     783 .. 0.63
   5 ?   -2.4   1.6      0.44     2e+03     175     208 ..     900     947 ..     893     997 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.21
  Fungal_trans 179 sqinlpLPcddddlwesddaseetlvetk............lsneeksrkiasfllaLkkilsk............iagsllsiekqlqqrdlq 248
                   s +++pL +++ ++ + d+a++ ++++++            ++ne++++k++s l  ++ +  +            i++ l si++++qq +  
    CCD26643.1 115 SRQHVPLKDEEKKVKSNDSATTMERYSVPrepmhgfdwdetVNNEKNQHKKSSLLDEMCLLNTDlnnkgyfgsksqISH-LRSIGFDSQQFQPT 207
                   5677788888888888888888888887799999999999989999999999998888877666777888888886666.77777777776655 PP

  == domain 2  score: 51.5 bits;  conditional E-value: 1.5e-17
  Fungal_trans   1 ldrffsnfhpqfpilhkpsflpkt.....ssenssksayasplll.....lailalGalfsesetkesnssltsesqefiafplraeilihedfssp 87 
                   ++++f nfh  +pil+k+sf++       + +n++ ++  +++++     +++la+G+ ++e+ +k++      +    i f+ +a   i+ + + +
    CCD26643.1 242 IESYFRNFHVYYPILNKESFMKRIrshqsNTNNNHTTNDDDEFFFqnilyNMVLAIGSWCLEEYSKKK-----ID---SI-FYTKAINSIDGQIFEN 329
                   689************************95444444444444444488888***********9999887.....32...33.4456666665555555 PP

  Fungal_trans  88 ssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkks..lwklweeeaesrrRlwwaaFylDktialklGrpp.l...... 175
                    s +  + ++ ll+ y++++++ ++ + ++g  +++a s+gL ++ + ++  s  +  ++ +  e+rrR+ww+    D ++++ + rp+ +      
    CCD26643.1 330 GS-IILIIAFYLLSKYCQWTENPNSSYIYIGHSIKMAISIGLFKELPEKSIPSssSSSSSSNIVEQRRRIWWCLSNHDFQLSILFDRPSqIsnhind 425
                   55.66777899************************************99988899888888889*************************95556533 PP

  Fungal_trans 176 lddsqinlpLPcddddlwesddaseetlvetk..........l 208
                   ++  +inlp P +dd++ + ++a++   + t            
    CCD26643.1 426 NNLASINLPTPISDDKFTFLTNANN--TIPTIydgiihiaslY 466
                   3334455556666665555554443..3332223455555551 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.072
  Fungal_trans   4 ffsnfhpqfpilhkpsflpktssenssksayasplll....lailalGalfsesetkesnssltses.............qefiafplraeilihed 83 
                   f++  +  ++il   +f++k   ++ ++ + ++ +l+    ++i+++ ++  ++++++++++++++s             +                
    CCD26643.1 533 FWEQQYLILYILRNLKFSTKN--DSLRDLKTCECILFevteWTINSISSFVNNKNNSTTTTNQENKSmnkleswycifysF---------------- 611
                   666666555677777777777..7777777777777777888888888888877777777777777655553333333221................ PP

  Fungal_trans  84 fsspssslwilqsLlllelyektssdralherhhgvavrlarslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsq 180
                                                                                                                    
    CCD26643.1   - -------------------------------------------------------------------------------------------------   -
                   ................................................................................................. PP

  Fungal_trans 181 inlpLPcddddlwesddaseetlvetklsneeksrkiasfllaLkki 227
                                                               +++
    CCD26643.1 612 --------------------------------------------NSV 614
                   ............................................222 PP

  == domain 4  score: -3.1 bits;  conditional E-value: 0.68
  Fungal_trans 199 seetlvetklsneeksrkiasfl 221
                    +  +++      +++ ++++f+
    CCD26643.1 714 QQQQQQQ------QQQQEPYKFH 730
                   3333322......3333333333 PP

  == domain 5  score: -2.4 bits;  conditional E-value: 0.44
  Fungal_trans 175 llddsqinlpLPcddddlwesddaseetlvetk...............l 208
                    ++ ++ +l+L  dd  + + +++++ t  +++               +
    CCD26643.1 900 AMNVYDNTLHLLIDDT-ETDNNTNNNNTAENNNafgmnmerqnslkstF 947
                   4677888888887777.44444444444444443566655554444441 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7  11.8   8.9e-14     4e-10       1      40 []       9      47 ..       9      47 .. 0.95

  Alignments for each domain:
  == domain 1  score: 39.7 bits;  conditional E-value: 8.9e-14
                SS-HHHHHCT---STSSSS-HHHHHCTHHHCCCCTCCCEE CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCtfysesskrs 40
                +aCdnCr kK KC++++P+C++C k+n++C  ys + krs
  CCD26643.1  9 QACDNCRLKKLKCSKHFPKCGQCLKNNWPCI-YSPKVKRS 47
                69*****************************.99999886 PP

>> Gal4_dimer  Gal4-like dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.4   3.2e-11   1.4e-07       1      38 [.      50      87 ..      50      89 .. 0.95

  Alignments for each domain:
  == domain 1  score: 31.5 bits;  conditional E-value: 3.2e-11
  Gal4_dimer  1 TRAhLTeVEsRvtqLEqlLrrllpeeDiDnlLknkhnn 38
                TR hLT++E+ +++LE l+ +llp+e i ++L++ + n
  CCD26643.1 50 TRVHLTNLENKLEKLENLFNKLLPNENINEILQKFDSN 87
                9********************************98876 PP

>> SUIM_assoc  Unstructured region C-term to UIM in Ataxin3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   7.2   1.6e-05     0.073      30      47 ..     708     725 ..     652     746 .. 0.64
   2 ?    0.9   3.5      0.11     5e+02      37      60 ..     986    1009 ..     981    1012 .. 0.78

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 1.6e-05
  SUIM_assoc  30 qeqqqqqqqqqqdppgql 47 
                 q+qqqqqqqqqq++++q 
  CCD26643.1 708 QQQQQQQQQQQQQQQQQE 725
                 334444444444444443 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.11
  SUIM_assoc   37 qqqqqdppgqlshprekpttSsga 60  
                  qqqq +pp    + +   +tSs+ 
  CCD26643.1  986 QQQQPQPPSPQQQAQGANSTSSNM 1009
                  778888888888888899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1033 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3053  (0.170283); expected 358.6 (0.02)
Passed bias filter:                      602  (0.0335769); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.96u 0.30s 00:00:01.26 Elapsed: 00:00:00.50
# Mc/sec: 6207.30
//
Query:       CCD26644.1  [L=1434]
Description: hypothetical protein NDAI_0I00750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.1e-26   90.5   0.1    2.5e-25   88.3   0.1    2.4  1  Helicase_Sgs1  Sgs1 RecQ helicase
    8.5e-22   77.6   0.2    1.1e-17   64.4   0.0    3.4  2  Helicase_C     Helicase conserved C-terminal domain
    1.2e-21   76.7   0.3    2.8e-21   75.4   0.3    1.7  1  RQC            RQC domain
    1.5e-21   77.0   0.1    5.7e-21   75.1   0.0    2.1  2  DEAD           DEAD/DEAH box helicase
      5e-16   59.2   9.4    1.8e-15   57.4   9.4    2.1  1  RecQ_Zn_bind   RecQ zinc-binding
     0.0002   21.4   0.0     0.0002   21.4   0.0    4.6  6  ResIII         Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.012   15.5   0.0      0.028   14.4   0.0    1.5  1  HRDC           HRDC domain
        0.4   11.2   5.9        2.6    8.6   0.1    4.0  4  Rhodanese      Rhodanese-like domain
        7.3    6.8   7.1        8.6    6.6   0.4    3.7  4  PIN_2          PIN domain


Domain annotation for each model (and alignments):
>> Helicase_Sgs1  Sgs1 RecQ helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.1   1.3e-28   2.5e-25       1      79 [.    1268    1346 ..    1268    1347 .. 0.98

  Alignments for each domain:
  == domain 1  score: 88.3 bits;  conditional E-value: 1.3e-28
                     ---HHHHHHHHHHHHHHHHHHSSSS--S-SS-HHHHHHHHHH---SHHHHGGGS---HHHHHHGGGTHHHHHHHHHHTT CS
  Helicase_Sgs1    1 ElnelkvayerlravainlgnrmnlpvdtylpdnilkkiAaiLPatedeFislvgnndkarrkykyfkatladlrkkrs 79  
                     El+ l++ay +lr+v++nlgnrmn+p+ ++l+d+ lkk+A+ LP te +F+ + +  +k+r+k+kyfk tl  lrk+r+
     CCD26644.1 1268 ELSALTSAYVKLREVSLNLGNRMNPPIAHFLSDTSLKKLATNLPITEGQFVAIPTIGEKQRKKFKYFKSTLLMLRKQRN 1346
                     7899*************************************************************************96 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00069       1.4       8      70 ..     704     766 ..     696     780 .. 0.80
   2 !   64.4   0.0   5.3e-21   1.1e-17       7     110 ..     881     984 ..     873     985 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00069
                 HHHHHTTTTSEEEEEESSHH.HHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEE CS
  Helicase_C   8 ellkleeeggkilifvntid.rlekvklllekkgikvavlhgelpqnereeileqfnkgesdvL 70 
                 + +k+ + +g+++++++ i+ + ++v+ ll k+ ik+ ++ ++ + +e++++++ f  g  dv+
  CCD26644.1 704 AVIKSGKTKGTTIVISPLISlMQDQVQHLLDKN-IKASMFSSRGTVEEKRQVFNLFICGLLDVV 766
                 44489999************5444477776666.**********************99999955 PP

  == domain 2  score: 64.4 bits;  conditional E-value: 5.3e-21
                 HHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHT CS
  Helicase_C   7 lellkleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriG 105
                  +++k++ ++++ +i++++++++e+++   ++ gik+a++h+ ++ ++r++i ++++++e++v+ at + ++Gid p+v++V++f +pr+++ y q  G
  CCD26644.1 881 ADMIKSKFRNQTGIIYCHSKNSCEQTSNQMQRAGIKSAYYHAGMEPDDRLKIQKAWQADEIQVICATVAFGMGIDKPDVRFVFHFTVPRTLEGYYQETG 979
                 4555777777888**********9844444677****************************************************************** PP

                 TSSST CS
  Helicase_C 106 RtgRa 110
                 R+gR 
  CCD26644.1 980 RAGRD 984
                 ****6 PP

>> RQC  RQC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.3   1.4e-24   2.8e-21       3     111 ..    1071    1186 ..    1069    1189 .. 0.94

  Alignments for each domain:
  == domain 1  score: 75.4 bits;  conditional E-value: 1.4e-24
                  -EEE-HHHHHHHHHHHHHT.TS-SBHHHHHHHHHT---CCCCCTTGGGSTTTTTTTTS-HHHHHHHHHHHHHTTSE.EEE......SSS.BEEE-CC CS
         RQC    3 etvDvteeaqkilscvyrt.gqrfgaghivdvLrGsktkkirqlghdklstfGigkdlskkewrrlirqLiaegyL.eedve....eyg.vlkltek 92  
                  e++D+t+ a++i+ +v+++ ++++++  ++d+++Gs+++ki q g+ +l+ +G g+++sk++++r++ +Li+ ++L e++v+    +   ++k++++
  CCD26644.1 1071 EERDITDIAKQIVTMVEKIqNDKVTLINCQDIFKGSRSSKIVQSGYSNLQQHGQGRKMSKSDIERIFFHLITIRLLqEYSVMnkggFATtYVKVGPS 1167
                  899****************669******************************************************888888***95556******* PP

                  GHHHHTSSS--EEESHHHX CS
         RQC   93 arevlkgeekvklreekkk 111 
                   +++  g  kv+++++++ 
  CCD26644.1 1168 VSKLRDGSLKVTMQFTSST 1186
                  *************998875 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1       6.1   1.2e+04     114     132 ..     409     427 ..     404     440 .. 0.81
   2 !   75.1   0.0   2.9e-24   5.7e-21       2     173 ..     671     840 ..     670     842 .. 0.84

  Alignments for each domain:
  == domain 1  score: -4.2 bits;  conditional E-value: 6.1
                 CTSSHCTTEEEEEEETHHH CS
                 xxxxxxxxxxxxxxxxxxx RF
        DEAD 114 tgklnlsqvrflVlDEadr 132
                 +  ln s++ f++ DE d 
  CCD26644.1 409 NDLLNQSDLDFVINDEDDA 427
                 456889999*******886 PP

  == domain 2  score: 75.1 bits;  conditional E-value: 2.9e-24
                 HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHH.TT.C CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx.x RF
        DEAD   2 diQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskld.ng.v 98 
                 + Q+ea+ ++l+g+dv++ ++TG GK+l++++p++  +    gkt+  +++++P+ +L+++++++l       + ++ +  g v++++q+ +l  +g +
  CCD26644.1 671 PNQEEAVSATLSGKDVFILMPTGGGKSLCYQLPAV--IK--SGKTKGTTIVISPLISLMQDQVQHLLDKNI--KASMFSSRGTVEEKRQVFNLFiCGlL 763
                 78*********************************..43..49999******************9955444..4566677899999999999855889* PP

                 SEEEEEHHHHHHHH....HCTSSH....CTTEEEEEEETHHHHHHT..TTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHH CS
                 xxxxxxxxxxxxxx....xxxxxx....xxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  99 divvgtpgrlddll....stgkln....lsqvrflVlDEadrlldq..gfsdfinrilnqlpqitcdgklqrqvivlSATlpkdv 173
                 d+v+  p+++            ++      ++  +V+DEa++++++  +f++++++ l+ +++ + d +    +++l+AT++++v
  CCD26644.1 764 DVVYISPEMISASEqckrA---IKrlhsDGKLARVVVDEAHCVSNWghDFRPDYKE-LKYFKREYPDVP----MMALTATASEQV 840
                 *******999985544441...2232124456779***********999*******.999999999999....*******99776 PP

>> RecQ_Zn_bind  RecQ zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   9.4   9.1e-19   1.8e-15       2      66 .]     997    1063 ..     996    1063 .. 0.94

  Alignments for each domain:
  == domain 1  score: 57.4 bits;  conditional E-value: 9.1e-19
  RecQ_Zn_bind    2 qDvsrlrrlieqs.eesekekeaelekleamlaycentteCrrkllleyFgeeaaeeeC.gnCDnCl 66  
                    +Dv++++ +i+++ + + ++ke++l+kl++++ayc n t+Crrkl+l+yF+e+++++ C +nCDnC+
    CCD26644.1  997 RDVRTMQTMIQKDeNLDRENKEKHLNKLQQVMAYCDNATDCRRKLVLSYFNEDFDSKLChKNCDNCK 1063
                    6*********9986678899999************************************888****6 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.4       3.4   6.8e+03      59     153 ..      21     118 ..      10     127 .. 0.46
   2 ?   -3.7   1.6       5.4   1.1e+04     121     140 ..     386     424 ..     331     425 .. 0.50
   3 ?   -1.8   0.6       1.3   2.7e+03      97     122 ..     568     604 ..     543     644 .. 0.58
   4 !   21.4   0.0     1e-07    0.0002       4     169 ..     669     836 ..     667     838 .. 0.77
   5 ?   -2.0   0.0       1.6   3.1e+03      41     105 ..     877     942 ..     875     949 .. 0.66
   6 ?   -1.1   0.2      0.83   1.7e+03      77     122 ..    1065    1114 ..    1039    1137 .. 0.61

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 3.4
                 EEESSHHHHHHHHHHGGGGTGG........GEEEESSS-B--.......-SEEEEEHHH.HHHTH........HHHTTT-SEEEEETGGGTTS.TTTHH CS
      ResIII  59 flvprkslleqtleefkkflseayke....igkkvsgdkkkakekdstnkkilvttiqs.ldadseeeeeeseellrdrfdviiiDEaHrlgakkswre 152
                 +l + k+l+ q +++  +++++++ +    i ++ +  +  ++ ++++  ++++++ ++ l ++++e   ++++  + r++ ii+D   r+ + +s  +
  CCD26644.1  21 VLQHDKDLVLQIINN--NVFPNKRRKqsipIPQNSTTSNMVESVNEDQREELFLFNANKpLMSPIQEIGLNNNDSTSVRNNQIINDGTGRIPKGSSSSH 117
                 566666666666654..3333333332333333333333333334444444444444432334442223334455555555666666666666555555 PP

                 H CS
      ResIII 153 i 153
                 i
  CCD26644.1 118 I 118
                 5 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5.4
                 ........................HHHTTT-S..EEEEET CS
      ResIII 121 e..................eeeseellrdrfd..viiiDE 140
                 +                  e+ +++ll+++ d  ++i+DE
  CCD26644.1 386 DeedpeedgyssymntreeERIENDLLNQS-DldFVINDE 424
                 144444444444444333333333333222.135888887 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 1.3
                 .......-SEEEEEHHHHHHTH............... CS
      ResIII  97 kekdstnkkilvttiqsldadseee...........e 122
                 +++++ ++++ ++t+  l+a+++++           +
  CCD26644.1 568 NSIKELDNDLKIITERNLNANEKNNwvpivikrensT 604
                 3445556666666666666665544555444433330 PP

  == domain 4  score: 21.4 bits;  conditional E-value: 1e-07
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH..HHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--... CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlva..aklierllkkgkeekflflvprkslleqtleefkkflseayke.igkkvsgdkkkakek 99 
                 +r+ Qeea+ ++l        k ++i m+TG GK+l++   ++i++ ++k     ++++ p +sl++   +++ +   +a ++   + v+++++ ++  
  CCD26644.1 669 FRPNQEEAVSATL------SGKDVFILMPTGGGKSLCYqlPAVIKSGKTK---GTTIVISPLISLMQDQVQHLLDKNIKASMFsSRGTVEEKRQVFNLF 758
                 7999********8......4678*************99623334444333...38***********999999988888887776555555555555555 PP

                 ....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS......TTTHHHHHT---....SEEEEEESS- CS
      ResIII 100 dstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak.....kswreilekfke....avllglTATp 169
                      +++ ++ ++++a+++ ++  +   ++++   +++DEaH ++         ++e l++fk+      +++lTAT 
  CCD26644.1 759 ICGLLDVVYISPEMISASEQCKRAIKRLHSDGKLARVVVDEAHCVSNWghdfrPDYKE-LKYFKReypdVPMMALTATA 836
                 67889999999999999998878888888888888********999876545448999.67776655558899999996 PP

  == domain 5  score: -2.0 bits;  conditional E-value: 1.6
                 HHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--.......-S CS
      ResIII  41 aaklierllkkgkeekflflvprkslleqtleefkkflseayke.igkkvsgdkkkakekdstnkk 105
                 ++++++ +++k++++  ++ +++k+ +eqt +++++   + +   +g + +++ k++k+ ++++++
  CCD26644.1 877 IFEIADMIKSKFRNQTGIIYCHSKNSCEQTSNQMQRAGIKSAYYhAGMEPDDRLKIQKAWQADEIQ 942
                 6778888888888899999999999999*9999987765544333444444444444444444444 PP

  == domain 6  score: -1.1 bits;  conditional E-value: 0.83
                  GTGG....GEEEESSS-B--.........-SEEEEEHHHHHHTH........ CS
      ResIII   77 flseaykeigkkvsgdkkka..kekdstnkkilvttiqsldadseee....e 122 
                   ++  ++  + ++++  k++    ++++n k+++++ q + + s++     +
  CCD26644.1 1065 SSHAMTE--ERDITDIAKQIvtMVEKIQNDKVTLINCQDIFKGSRSSkivqS 1114
                  3333332..2222222222245556777999999999999988865555541 PP

>> HRDC  HRDC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.4   0.0   1.4e-05     0.028       8      60 ..    1279    1331 ..    1274    1332 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.4e-05
                  HHHHHHHHHHHHTS-HHHHS-HHHHHHHHHH---SHHHHHTSTTT-HHHHHHH CS
        HRDC    8 LrewReelAreedvppyvvfpdktLleiAeklPttleeLlqiegvgkrkleky 60  
                  Lre+  +l  + + p    ++d  L+++A  lP t++++ +i+ +g+++ +k+
  CCD26644.1 1279 LREVSLNLGNRMNPPIAHFLSDTSLKKLATNLPITEGQFVAIPTIGEKQRKKF 1331
                  66666666666677777779******************************997 PP

>> Rhodanese  Rhodanese-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2      0.23   4.5e+02      21      53 ..     347     382 ..     328     397 .. 0.61
   2 ?    8.6   0.1    0.0013       2.6      52      98 ..     874     921 ..     854     925 .. 0.66
   3 ?    0.6   0.0      0.41   8.1e+02      45      80 ..    1007    1037 ..     995    1056 .. 0.67
   4 ?   -2.4   0.0       3.3   6.7e+03      44      91 ..    1068    1116 ..    1061    1120 .. 0.71

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.23
   Rhodanese  21 ppeeYekghIpgAvnv...skdtlsrakkseaplle 53 
                 +p +Y+ g I+ ++n     ++++++++++e+++++
  CCD26644.1 347 DPFDYKIGKINDSINNsntTHTSFNQFEEEEEDDDD 382
                 4556999*********65522222222222222222 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 0.0013
   Rhodanese  52 lelpeellel..gidnkktvvvycdgggraaaaaallkklGyknvsvld 98 
                 ++++ e++++    ++++t ++yc+++++ +++ ++++++G k  ++  
  CCD26644.1 874 KNTIFEIADMikSKFRNQTGIIYCHSKNSCEQTSNQMQRAGIKSAYY-H 921
                 3333333333455599*************999988777799554443.3 PP

  == domain 3  score: 0.6 bits;  conditional E-value: 0.41
   Rhodanese   45 kkseapllelpeellelgidnkktvvvycdgggraa 80  
                  +k+e+ + e+ e+     +++ ++v  ycd++ + +
  CCD26644.1 1007 QKDENLDRENKEKH----LNKLQQVMAYCDNATD-C 1037
                  44444444444444....556*********9888.3 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 3.3
   Rhodanese   44 akkseapllelpeellel..gidnkktvvvycdgggraaaaaallkklGy 91  
                  a  +e++  ++ +++  +  +i+n+k   + c++  + +++ ++++  Gy
  CCD26644.1 1068 AMTEERDITDIAKQIVTMveKIQNDKVTLINCQDIFKGSRSSKIVQ-SGY 1116
                  4556677777777777778889999999999998888666666666.565 PP

>> PIN_2  PIN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       2.2   4.4e+03      43      79 ..     174     210 ..     172     221 .. 0.82
   2 ?    6.6   0.4    0.0043       8.6      53     108 ..     457     510 ..     434     511 .. 0.83
   3 ?    1.4   0.0      0.17   3.4e+02      28      72 ..     988    1032 ..     980    1038 .. 0.88
   4 ?   -2.0   0.0         2   3.9e+03      30      64 ..    1069    1103 ..    1058    1134 .. 0.69

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 2.2
       PIN_2  43 kealvkksklseeeleellelletkikiveeslyesk 79 
                 k++l++ +k+  ++l++  ++ e+ki i+e++++++ 
  CCD26644.1 174 KDTLINLQKCLIDTLKDQSQTYEEKISIIESTSLSED 210
                 5788899999999999999999999999999888754 PP

  == domain 2  score: 6.6 bits;  conditional E-value: 0.0043
       PIN_2  53 seeeleellelletkikiveeslyeskikeAkeriarvDpdDtpfvAlaLlleapi 108
                 ++ee++++++ l ++i+i+ +s  ++ i e  e++++ D+dD  fvA+aL  ++ i
  CCD26644.1 457 ESEEFHDAADDL-NNIQIILSSPQKQPIVEPIELLDD-DEDDDSFVATALTPQSNI 510
                 556666666665.68999999999999**********.************987766 PP

  == domain 3  score: 1.4 bits;  conditional E-value: 0.17
       PIN_2   28 eliapeeaveeiekhkealvkksklseeeleellelletkikive 72  
                  + +++++++ +++  +  + k ++l+ e+ e+ l++l++ +   +
  CCD26644.1  988 SYCITYFCFRDVRTMQTMIQKDENLDRENKEKHLNKLQQVMAYCD 1032
                  678999*******************************99887665 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 2
       PIN_2   30 iapeeaveeiekhkealvkksklseeeleellell 64  
                  ++ e+ + +i+k+  ++v+k + ++++l ++ ++ 
  CCD26644.1 1069 MTEERDITDIAKQIVTMVEKIQNDKVTLINCQDIF 1103
                  45566677888888888888888888777777644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1434 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1420  (0.0792013); expected 358.6 (0.02)
Passed bias filter:                      400  (0.0223102); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.90u 0.28s 00:00:01.18 Elapsed: 00:00:00.47
# Mc/sec: 9215.68
//
Query:       CCD26645.1  [L=377]
Description: hypothetical protein NDAI_0I00760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-12   47.7   0.0    2.9e-12   46.7   0.0    1.4  1  NUDIX          NUDIX domain
    0.00013   21.5   0.0    0.00033   20.3   0.0    1.7  1  zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
  ------ inclusion threshold ------
       0.13   12.9   0.0       0.22   12.2   0.0    1.4  1  NUDIX-like     NADH pyrophosphatase-like rudimentary NUDIX do
        1.4    9.2   3.6       0.53   10.5   0.7    1.7  2  IBR            IBR domain, a half RING-finger domain


Domain annotation for each model (and alignments):
>> NUDIX  NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   6.6e-16   2.9e-12       5     115 ..     220     330 ..     216     342 .. 0.72

  Alignments for each domain:
  == domain 1  score: 46.7 bits;  conditional E-value: 6.6e-16
                 EEEEEEEETT.SEEEEEEESSSSTTT...EESSEEECBTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE..EEECSGCS CS
       NUDIX   5 avgvvllnek.gevLlvrrskkpfpg...WelPgGkvepgEtpeeAArREleEEtGleaellellgrlhylapydgpygdeheilyvfl..eevegele 97 
                  v+v ++ ++  ++ l+r++ ++  +   +++++G++ep Et+e+A+ RE++EEtG++++++ ++         ++p++ +  +++  l   +++g +e
  CCD26645.1 220 VVIVAMTSRDfSKICLARSR-RRYGDfimYSTIAGFMEPAETVENACTREIWEETGIRCNEISMIC--------TQPWPYPVNLMIGCLgiVDFNGINE 309
                 44455555553559999977.4455546568****************************8888887........4677775555544444555555555 PP

                 ST...STTTEEEEEEEEHHHH CS
       NUDIX  98 pn...denevsevrwvpleel 115
                      +++e+ +++w++ ee+
  CCD26645.1 310 KIsldHDAELLDAQWFDTEEV 330
                 44555***************9 PP

>> zf-NADH-PPase  NADH pyrophosphatase zinc ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.3e-08   0.00033       2      26 ..     171     195 ..     170     200 .. 0.91

  Alignments for each domain:
  == domain 1  score: 20.3 bits;  conditional E-value: 7.3e-08
  zf-NADH-PPase   2 thrFCgrCGaptepaeggwarvCpa 26 
                    +++FC+ CG+ + p ++g++++C++
     CCD26645.1 171 KYKFCPGCGSVVYPIDAGTKLQCSN 195
                    689********************75 PP

>> NUDIX-like  NADH pyrophosphatase-like rudimentary NUDIX domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.9e-05      0.22      34     102 .]      84     168 ..      22     168 .. 0.80

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.9e-05
  NUDIX-like  34 vgkdseelvfLGldeg............gapvfAvdvsareeeikeaeeeggafvelRavm....lalsaedaalaaqAralldW 102
                 ++ +   l+fLGl e+            g+p+f + ++ +++ +   +++ +   ++R+v+     +ls + a+l+ +A+  ldW
  CCD26645.1  84 IDASGVGLTFLGLKETldssfeykstykGTPYFGINFELNDDTTLIKLQDISLLSQYRKVGrediFKLSNDVASLYSHAKMYLDW 168
                 555666789***9999999***********************755555666667789999999999***************9999 PP

>> IBR  IBR domain, a half RING-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.7   0.00012      0.53       9      53 ..     163     203 ..     158     213 .. 0.78
   2 ?   -2.3   0.1       1.2   5.5e+03      41      58 ..     277     290 ..     256     293 .. 0.65

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00012
         IBR   9 kkslesdpnlkwCprpdCeaiieksegcksvtCskCgfefCfnCk 53 
                 k +l++ +++k Cp  +C++++ + +  ++++Cs  ++++ ++C+
  CCD26645.1 163 KMYLDWLSKYKFCP--GCGSVVYPIDAGTKLQCS--NEDTSIRCN 203
                 667889889*****..******888876777898..555655665 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 1.2
         IBR  41 CskCgfefCfnCkkewHe 58 
                 C+    e+ + C ++w +
  CCD26645.1 277 CN----EISMICTQPWPY 290
                 44....555677777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       445  (0.0248201); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2908.61
//
Query:       CCD26646.1  [L=649]
Description: hypothetical protein NDAI_0I00770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    8.8e-30  102.4   0.5    8.8e-30  102.4   0.5    2.3  2  SCA7        SCA7, zinc-binding domain
    3.5e-21   74.5   0.4    6.7e-21   73.6   0.4    1.5  1  zf_C2H2_13  Zinc finger domain
  ------ inclusion threshold ------
      0.019   15.2   0.1      0.045   14.0   0.1    1.5  1  GGDEF_2     GGDEF-like domain


Domain annotation for each model (and alignments):
>> SCA7  SCA7, zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.5   1.5e-33   8.8e-30       2      67 ..     222     287 ..     221     288 .. 0.97
   2 ?   -3.7   1.7       1.9   1.2e+04      45      67 ..     307     329 ..     303     330 .. 0.72

  Alignments for each domain:
  == domain 1  score: 102.4 bits;  conditional E-value: 1.5e-33
        SCA7   2 kkkkkkkkkkkkevdvdkqCGVilpngkpCtRsLtCksHslgakraVegRskpfdvLlaeykkkkq 67 
                 +k k++++++k+ +d+dkqCGV lp+g++C+RsLtCksHs+gakraVegR++pfd+Llaey+k +q
  CCD26646.1 222 RKVKQRNPTDKHLIDFDKQCGVQLPEGGYCARSLTCKSHSMGAKRAVEGRTEPFDTLLAEYHKTHQ 287
                 6889***********************************************************987 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 1.9
        SCA7  45 kraVegRskpfdvLlaeykkkkq 67 
                 +++++  +k+  +Ll++ k++k+
  CCD26646.1 307 QKQIQKEQKEQKKLLQQQKRQKK 329
                 56777777888888888888765 PP

>> zf_C2H2_13  Zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.4   1.1e-24   6.7e-21       2      42 .]      54      94 ..      53      94 .. 0.97

  Alignments for each domain:
  == domain 1  score: 73.6 bits;  conditional E-value: 1.1e-24
  zf_C2H2_13  2 sntrliedpLdtnlnYRvCnkCGkPisleaivdHLenhCkg 42
                +n+++ied+Ldt ++YRvCn+CGkPi+l+a+++HLen Ck+
  CCD26646.1 54 ENATIIEDSLDTLSEYRVCNQCGKPIKLYALIAHLENGCKS 94
                8**************************************96 PP

>> GGDEF_2  GGDEF-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.1   7.6e-06     0.045      74     101 ..     611     644 ..     594     645 .. 0.80

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 7.6e-06
     GGDEF_2  74 e.......allerlarrlgglsvriGiGspvegla 101
                 +       +++++l++++g+ +v +GiG+pv+g+ 
  CCD26646.1 611 QqqqqqqiQIQQQLRQQVGS-PVNVGIGNPVNGFG 644
                 034456789***********.**********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      4663  (0.260081); expected 358.6 (0.02)
Passed bias filter:                      812  (0.0452898); expected 358.6 (0.02)
Passed Vit filter:                       291  (0.0162307); expected 17.9 (0.001)
Passed Fwd filter:                       140  (0.00780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 2.00u 0.37s 00:00:02.37 Elapsed: 00:00:00.58
# Mc/sec: 3361.99
//
Query:       CCD26647.1  [L=504]
Description: hypothetical protein NDAI_0I00780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.5e-34  119.0   0.0    2.1e-34  118.5   0.0    1.3  1  Glycos_transf_1  Glycosyl transferases group 1
    6.8e-15   55.5   0.0    1.1e-14   54.8   0.0    1.3  1  Glyco_transf_4   Glycosyltransferase Family 4
    3.8e-09   37.1   0.0    1.2e-08   35.4   0.0    1.7  1  Glyco_trans_1_4  Glycosyl transferases group 1
     0.0031   17.6   0.5       0.49   10.4   0.2    2.4  2  ALG11_N          ALG11 mannosyltransferase N-terminus


Domain annotation for each model (and alignments):
>> Glycos_transf_1  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.5   0.0   4.8e-38   2.1e-34       3     171 ..     208     416 ..     206     417 .. 0.91

  Alignments for each domain:
  == domain 1  score: 118.5 bits;  conditional E-value: 4.8e-38
                      HHHHHHTTTTTT-EEEEEESS-TTTTTHHHHHHHHHCCCCCHCSCEEEEEES.........STTHHHHHHHHHHHCTTCGGGEEECCH.SSSHH CS
  Glycos_transf_1   3 ekkrkklgknekkkiilsvgrlekeKgvdllikafallkkqlnpnvklviaG........ngeeekelkklaeelelsdnviflgevs.redle 87 
                      ++k +++ +n ++k++ls++r+++ K++ l++k+fal+ + +n+n+kl+i+G        n+  +kel+++a+ l+ls  +if+ e + ++dl+
       CCD26647.1 208 DEKLFSHLLNPEDKFYLSINRFDRAKNILLALKSFALSGESKNDNAKLLICGgydervieNVICLKELQREADILKLSYSTIFYPEFErNKDLD 301
                      67889999********************************************************************************999999 PP

                      HHHHC.ESEEEEEESS....................BSS-HHHHHHHHTT--EEEETTTTHCHHCHTTT........SEEEE-TT-HHHHHHHH CS
  Glycos_transf_1  88 ellkn.adifvlpsis....................EgfGivllEAmaaglpviasnaggpaevvkdge........tGllvkpnnaealaeai 152
                       +  + ++i++l+sis                    E+fGiv++EAm+ g+pv+a+ +ggp+e+v+           tG+l +p+ +e +a+ i
       CCD26647.1 302 MFTAKhSKIIFLTSIStslkelllnktemllytptnEHFGIVPVEAMKHGKPVLATTSGGPLETVETLIpgrndsaaTGWLRDPK-PERWAKVI 394
                      999889************************************************************999999*************.66666666 PP

                      HHHH...HSHHHHHHHHHHHHH CS
  Glycos_transf_1 153 rkll...edeelrerlgenark 171
                      ++++   +d+++  ++g+ +++
       CCD26647.1 395 DEWIvlqKDPNSKINFGKSGPN 416
                      6655111555777777777765 PP

>> Glyco_transf_4  Glycosyltransferase Family 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   2.4e-18   1.1e-14       1     169 [.      20     200 ..      20     201 .. 0.83

  Alignments for each domain:
  == domain 1  score: 54.8 bits;  conditional E-value: 2.4e-18
  Glyco_transf_4   1 vGGverhvleLaraLarrGheVtvvtpgddgpleeev............elvvrvprvplpllkrllrslaflrrlrrllkrekpDvvHahspaa 83 
                     +GG+er +++ a +L+++G +V ++t++ d+ +  e+            +++  +++  + +     r +   ++l    k+ ++Dv  + +  +
      CCD26647.1  20 IGGAERLIVDAALGLQQQGNKVIIYTSHCDKSHCFEEikdgtievevigDHLPTHIYGKFAIVCATIRQIFLTSQLLLTKKAINYDVFIVDQLST 114
                     7***************************************9998875444444444444444444555556666777777888*********887 PP

  Glyco_transf_4  84 lgaallalrrrlgiplVltvHglye..krllkarlkplsrllralerrllrradrviavSeatadelreryg.vppekitVipnGvDle 169
                     ++  l++    + + + +++H+++   +++    +k++++ +  +e+++++ ad+v+++S++t+  +++ ++ ++     Vi++ v l+
      CCD26647.1 115 CLILLHK---YTSAVTLFYCHFPDQylTKRDSLLKKLYRIPFDLIEQFTISTADHVVVNSNFTKSMYHRAFKyLNDTEPDVIYPCVSLS 200
                     7555443...369***********9987788888899999999999999********************99977779*******99875 PP

>> Glyco_trans_1_4  Glycosyl transferases group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   2.7e-12   1.2e-08       7     129 ..     226     395 ..     221     398 .. 0.74

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 2.7e-12
                      ES---GG.GTHHHHHHHHHHHH.H.H..EEEEEES---..........HHHHHHHTT-.........................T.TEEEE---. CS
  Glyco_trans_1_4   7 vGrleenvkgvdllleavpllrkk.d..vrlvivGdgprp........eeleelaagl.........................eerveftGfv. 63 
                      + r+ ++ k++ l l+ ++l  ++ +  ++l+i+G+ +++        +el+++a+ +                         +++++f+  + 
       CCD26647.1 226 INRF-DRAKNILLALKSFALSGESkNdnAKLLICGGYDERvienviclKELQREAD-IlklsystifypefernkdldmftakHSKIIFLTSIs 317
                      5678.56799999999998777554347*******664444556666666665554.14558999999999999999999986677*******7 PP

                      THHHHH.HHH-SEEEE--..---SHHHHHHHHTT-EEEE-TGGGTTT--.....T.....TSSEE--TT-HHHHHHHHH CS
  Glyco_trans_1_4  64 edlael.laaadvfvaPs..egfglkllEamaaglpvVatdvggiaevv.....g.....engllvppgdpealaeail 129
                      ++l+el l++  +++ +   e fg++ +Eam +g+pv at+ gg+ e+v     g      +g+l +p +pe +a+ i 
       CCD26647.1 318 TSLKELlLNKTEMLLYTPtnEHFGIVPVEAMKHGKPVLATTSGGPLETVetlipGrndsaATGWLRDP-KPERWAKVID 395
                      666666367777766644699**********************9988776656753333345788876.4999998776 PP

>> ALG11_N  ALG11 mannosyltransferase N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.2   0.00011      0.49       3     108 ..      10     126 ..       8     134 .. 0.75
   2 !    5.1   0.0    0.0045        20     169     203 ..     142     176 ..     132     181 .. 0.89

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.00011
     ALG11_N   3 ivgffHPycnaggGGErVLwaavkalqkekkkvkivvYtgdl................evskeeilekvkerfnieldkkrikfvaLkkrklveaktyp 85 
                  ++f HP   + gG Er +  a   lq++   +k+++Yt+ +                ev  +++ +++  +f i     +i+ ++L+++ l+++k+ +
  CCD26647.1  10 SIAFIHPDL-GIGGAERLIVDAALGLQQQG--NKVIIYTSHCdkshcfeeikdgtievEVIGDHLPTHIYGKFAIVCA--TIRQIFLTSQLLLTKKAIN 103
                 689****86.56889****99988887665..7899999886567778877777776667777788888888888876..5999999999999888887 PP

     ALG11_N  86 rfTLlgqslgsvllaleallklv 108
                 +  +++ +l+++l+ l+ +++ v
  CCD26647.1 104 YDVFIVDQLSTCLILLHKYTSAV 126
                 77777777777777666665555 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.0045
     ALG11_N 169 lsllkllYyklfallYslvgsladvvmvnssWTkn 203
                  sllk lY   f l+ +++ s+ad v+vns +Tk+
  CCD26647.1 142 DSLLKKLYRIPFDLIEQFTISTADHVVVNSNFTKS 176
                 567899999999*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       565  (0.0315132); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.26s 00:00:00.79 Elapsed: 00:00:00.42
# Mc/sec: 3636.46
//
Query:       CCD26648.1  [L=600]
Description: hypothetical protein NDAI_0I00790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.1e-32  113.2   0.4    2.7e-32  111.9   0.1    1.8  2  DEAD        DEAD/DEAH box helicase
    7.1e-17   61.8   3.3    7.6e-12   45.6   0.1    3.7  5  Helicase_C  Helicase conserved C-terminal domain
    2.2e-09   37.5   1.1    1.2e-08   35.2   0.1    2.4  2  ResIII      Type III restriction enzyme, res subunit
     0.0011   19.3   0.1      0.012   15.9   0.1    2.6  2  AAA_22      AAA domain


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.9   0.1   6.1e-36   2.7e-32       2     174 ..     161     348 ..     160     350 .. 0.86
   2 ?   -2.6   0.0      0.92   4.1e+03      80     110 ..     440     466 ..     411     482 .. 0.67

  Alignments for each domain:
  == domain 1  score: 111.9 bits;  conditional E-value: 6.1e-36
                 HHHHHHHHHHHTTCEEE........EEESTTSSHHHHHHHHHHHHHHHS...........TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEE CS
                 xxxxxxxxxxxxxxxxx........xxxxxxxxxxxxxxxxxxxxxxxx...........xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   2 diQaeaiplilgggdvl........vaaeTGsGKTlaflipvlqivyet...........kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlli 81 
                 +iQ  +i+ +   +d++        +aaeTGsGKT+a+lip+++ + ++           k++   + +i++Pt+eL++q+++++k+  + ++  +  +
  CCD26648.1 161 PIQVLTIKKLS--KDLMapklklnaIAAETGSGKTMAYLIPLMDYLKRQeletpdvwnsiKDNAIIRSVILVPTHELVHQVYSTIKNTEDSLNFHTYKW 257
                 67777777777..5555566666669********************8889999999998888888**************************99999999 PP

                 ETTSSHHHHHHHHHTTCSEEEEEHHHHHHHH.....HCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  82 iggvaardqlskldngvdivvgtpgrlddll.....stgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvk 174
                  +g++ ++ ++kl++++di+v+tp +l++l+     s+    lsqv+f+VlDEad+lld +  ++  + ++++       ++++++i++SAT+p++ +
  CCD26648.1 258 GSGTSHEEFIEKLKSRIDILVTTPAKLLSLFkirviSRPDKILSQVKFVVLDEADTLLDRSWVEDTYHTIKNM-------PNTNHLIFCSATIPNEFN 348
                 99***********999**************966665444444******************9888888888888.......44456********97665 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 0.92
                 EEETTSSHHHHHHHHHTTCSEEEEEHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  80 liiggvaardqlskldngvdivvgtpgrldd 110
                  ++g+++a++ l+kl    ++++  p++l +
  CCD26648.1 440 GLTGSDSAEERLQKL----KVFINSPKQLTN 466
                 455666676666666....777777777765 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.2   1.4e+04      50      72 ..     115     137 ..      98     156 .. 0.63
   2 ?   -2.2   0.0       1.1   5.1e+03      52      73 ..     260     280 ..     224     283 .. 0.62
   3 ?   -0.4   0.0      0.32   1.4e+03      13      60 ..     329     379 ..     320     399 .. 0.61
   4 !   14.4   0.0   8.3e-06     0.037       6      62 ..     397     457 ..     388     467 .. 0.83
   5 !   45.6   0.1   1.7e-15   7.6e-12      44     110 ..     502     568 ..     474     569 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.6 bits;  conditional E-value: 3.2
                 STHHHHHHHHHHHHTTSSSEEEE CS
  Helicase_C  50 lpqnereeileqfnkgesdvLia 72 
                 ++  e ++il + ++   d+++ 
  CCD26648.1 115 ITEFEHLKILPAVRAAAKDIIVN 137
                 44455555555555555555554 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 1.1
                 HHHHHHHHHHHHTTSSSEEEES CS
  Helicase_C  52 qnereeileqfnkgesdvLiat 73 
                   + ee +e+  k ++d+L++t
  CCD26648.1 260 GTSHEEFIEKL-KSRIDILVTT 280
                 45667788888.6688899888 PP

  == domain 3  score: -0.4 bits;  conditional E-value: 0.32
                 TTTTSEEEEEESSHH..HHHH..HHHHHHHTTSTEEEESTTSTHHHHHHHHH CS
  Helicase_C  13 eeeggkilifvntid..rlek..vklllekkgikvavlhgelpqnereeile 60 
                 +  + + lif+  +   +++k   +l+ +  +i++ +lh  lpq+ + +i++
  CCD26648.1 329 NMPNTNHLIFCSATIpnEFNKtlERLFPTVTSISTPRLHK-LPQSLNFKIIN 379
                 5566777888888776755544446665555788888887.66655555444 PP

  == domain 4  score: 14.4 bits;  conditional E-value: 8.3e-06
                 HHHHH...HHTTTTSEEEEEESSHHHHHH.HHHHHHHTTSTEEEESTTSTHHHHHHHHHHH CS
  Helicase_C   6 llell...kleeeggkilifvntidrlek.vklllekkgikvavlhgelpqnereeileqf 62 
                 l++++   ++   ++++++fvn ++++ k v+ll++k g +++ l+g+ +++er++ l+ f
  CCD26648.1 397 LYAIMhdgTEPGLEKRCIVFVNEKKHVPKvVELLNSKYGHHSVGLTGSDSAEERLQKLKVF 457
                 444446666667789**********9988899998888******************99988 PP

  == domain 5  score: 45.6 bits;  conditional E-value: 1.7e-15
                 EEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHHHHHHHHTTSSST CS
  Helicase_C  44 avlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvtsyiqriGRtgRa 110
                 ++l+ ++ + + +++++   +  ++vL++td ++rG+++++++++i +d+p++  ++++r+GRt R+
  CCD26648.1 502 IILDTSMDNAQEDHTVTLSDALPIRVLVTTDLMARGLNFQGIKNIILYDVPKTSIDLVHRVGRTSRM 568
                 489999*************999999****************************************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.1   2.6e-12   1.2e-08       4     170 ..     159     344 ..     147     345 .. 0.83
   2 ?    0.2   0.2      0.15   6.6e+02      56     128 ..     412     478 ..     389     523 .. 0.49

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 2.6e-12
                 E-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHH.HHHHHHH-S..................-EEEEESSHHHHHHHHHHGGGGTGG....GEEE CS
      ResIII   4 lreyQeeaienlleklkskrdkrglikmaTGtGKTlva.aklierllkkgkee.............kflflvprkslleqtleefkkflseaykeigkk 88 
                 + + Q   i++l + l + + k + i+++TG+GKT+ + + l+++l++++ e              + ++lvp+ +l+ q ++++k++ ++ +  + k 
  CCD26648.1 159 PSPIQVLTIKKLSKDLMAPKLKLNAIAAETGSGKTMAYlIPLMDYLKRQELETpdvwnsikdnaiiRSVILVPTHELVHQVYSTIKNTEDSLNFHTYKW 257
                 5667788888888888878999999*************899999999987777********************************99998876555555 PP

                 ESSS-B--........-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.....TTTHHHHHT---SEEEEEESS-S CS
      ResIII  89 vsgdkkka.kekdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgak....kswreilekfkeavllglTATpe 170
                  sg ++++  ek ++ ++ilvtt  +l +  + +   + ++  ++ ++++ DEa  l +     +++  i+++ + + l+  +AT++
  CCD26648.1 258 GSGTSHEEfIEKLKSRIDILVTTPAKLLSLFKIRVISRPDKILSQVKFVVLDEADTLLDRswveDTYHTIKNMPNTNHLIFCSATIP 344
                 55555555667889999************996666667777777778*******999998555449999999988899999999975 PP

  == domain 2  score: 0.2 bits;  conditional E-value: 0.15
                 -EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH........HH CS
      ResIII  56 kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadseeeeeeseel 128
                 +++++v++k+ + +  e +++ +  +     + + +d+ ++   + ++ k+++ + ++l+++s +++  ++e+
  CCD26648.1 412 RCIVFVNEKKHVPKVVELLNSKYGHH---SVGLTGSDSAEE---RLQKLKVFINSPKQLTNESAQQSDVQNEM 478
                 66666666655555554443333222...122222222222...34455555555555555554442222222 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.7e-06     0.012       9     122 ..     183     335 ..     180     351 .. 0.80
   2 ?   -0.4   0.0      0.29   1.3e+03      72      99 ..     552     580 ..     523     581 .. 0.83

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 2.7e-06
      AAA_22   9 vvtGesGtGKTtllrrlleqldeeakaee...................................erpevv.fvtlpsstsskdllrellralglelkae 71 
                 ++ +e+G+GKT+ +   l+ + ++++ e+                                   e++  + +++  s+ts +++ ++l + ++  l + 
  CCD26648.1 183 AIAAETGSGKTMAYLIPLMDYLKRQELETpdvwnsikdnaiirsvilvpthelvhqvystikntEDSLNFhTYKWGSGTSHEEFIEKLKSRIDI-LVT- 279
                 5889**********99999999999999999******************99999999999987633333348888888899999********97.555. PP

      AAA_22  72 rlsseellealeqalrarav.....ielliiDEaqh.lr.s..eealeeLrsllnlsrkg 122
                   +   ll+++   + +r +     ++++++DEa+  l+ s  e+ + +++++ n  + +
  CCD26648.1 280 --TPAKLLSLFKIRVISRPDkilsqVKFVVLDEADTlLDrSwvEDTYHTIKNMPN--TNH 335
                 ..57777766655555555558999***********5546488999999999998..554 PP

  == domain 2  score: -0.4 bits;  conditional E-value: 0.29
      AAA_22  72 rlsseellealeqalrarav.ielliiDE 99 
                 +++s +l++++ + +r +++ ++++iiD+
  CCD26648.1 552 PKTSIDLVHRVGRTSRMKQRgRVFMIIDN 580
                 4578889999999999999999******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       864  (0.0481901); expected 358.6 (0.02)
Passed bias filter:                      390  (0.0217525); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.58u 0.27s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4279.89
//
Query:       CCD26649.1  [L=867]
Description: hypothetical protein NDAI_0I00800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      2e-85  286.7  17.0      2e-85  286.7  17.0    3.4  3  Hyphal_reg_CWP  Hyphally regulated cell wall protein N-termin


Domain annotation for each model (and alignments):
>> Hyphal_reg_CWP  Hyphally regulated cell wall protein N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.7  17.0   1.1e-89     2e-85       3     328 .]      12     327 ..      10     327 .. 0.95
   2 ?   -0.5   2.8     0.026   4.6e+02      28      97 ..     580     649 ..     485     658 .. 0.75
   3 !    6.9   0.8   0.00014       2.6     111     170 ..     726     788 ..     704     846 .. 0.80

  Alignments for each domain:
  == domain 1  score: 286.7 bits;  conditional E-value: 1.1e-89
  Hyphal_reg_CWP   3 llialalaleisentvdrgainlgigdltInsgaylsiinnalsafvgdlsvenngglyitsts.sllalsvtlasatgsieNnGiivfnseesl 96 
                     ll+++++a+e+s+ntv +g++ +g + + ++s+ayl++i+ ++++f++dl+v  ngglyi++++ +++++++t   ++g++eN+Giiv+++++++
      CCD26649.1  12 LLATSTFAYEVSTNTVLDGSVPTG-EPVVVDSDAYLALIHGSTQTFSNDLTV--NGGLYISDSNtADAGMTLT---TNGNLENTGIIVVDNRNAT 100
                     78999*******************.**************************9..9******999677778877...89***************** PP

  Hyphal_reg_CWP  97 tassyklvgasFeNnGelylagsgsvvastmeits.nsweNnGlivfyqsqrssgtvklgaalgsitNdGqIclknqayqqttsiqGsGCitvge 190
                     t ++ ++ g++F+N+G++++ags +  ++ ++i++ +s+ N+G+i+f+q+   s++++l+  ++sitNdG+Icl+n++  ++++++G+GC+++g 
      CCD26649.1 101 TGMEATIGGSTFRNDGQMFFAGSYKGTSNAFNINPsTSLINTGTIQFSQDAIGSSEADLK--SESITNDGTICLQNMKSIIQSDVNGNGCFDIGV 193
                     ***********************************9***********************9..689****************************** PP

  Hyphal_reg_CWP 191 dssiyisnsllsissdqtiYLadsssslvvesvskpqtfkvagFGngnkigltlpllglvlssisYdsdtgiLtlralll.sqkFnIGtGYdssk 284
                     +s+++i+ +   i+++qt+YL++++ssl+ es++ ++++ v+gFGngn++++++++      s sYds+tgiL+++   + ++++nIG+GYdss+
      CCD26649.1 194 NSMYVIQGKDTAIATNQTFYLSSTTSSLYSESNALTDNIIVRGFGNGNTLTFRTSV-----VSSSYDSETGILSVNLFPFiYHDYNIGLGYDSSL 283
                     ******99999***********************9999*****************7.....689***********9553337************* PP

  Hyphal_reg_CWP 285 FeivtdagagllsvqngavtYngpvPsrslPsaCqaCksvpeaP 328
                     F++ + +++ ++ ++n+ + Y gp+P++s+P++C+ C+++p++P
      CCD26649.1 284 FQVKSVSNSITPDLINNGLAYLGPPPTSSRPAVCSVCQPIPWIP 327
                     **77766777779*****************************99 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.026
  Hyphal_reg_CWP  28 gdltInsgaylsiinn.alsafvgdlsvenngglyitstssllalsvtlasatgsieNnGiivfnseeslt 97 
                     +++ +  g++  +i + +++++v+d s e++   y  +t s+  ++vt+ +++++ +N+ +iv n+ ++ +
      CCD26649.1 580 ESTYVLVGSSSELISApYTTTIVSDGSSETDVVSYYPTTYSNGDVTVTV-TTLTKYHNSSTIVTNKSTQHK 649
                     4455555555554444145577777777777777777777788888884.567888888888888777655 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.00014
  Hyphal_reg_CWP 111 nGelylagsgs..vvastmeitsnsweNnGlivfyqsqrssgtvklgaalgsi.tNdGqIclk 170
                     +G++ +++  +  v +s  +i + s++N++++++y ++ +++++++ +a +si tN+ +I  +
      CCD26649.1 726 SGNVIIKSTTQtlVPNSFSTIRAGSVTNTNVLTVYPTSDKASKIQIASAANSIvTNTPSITTS 788
                     57777777776323456678999999*********9999999999997776555998888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1200  (0.0669307); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        67  (0.00373696); expected 17.9 (0.001)
Passed Fwd filter:                        20  (0.00111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.43
# Mc/sec: 6070.49
//
Query:       CCD26650.1  [L=328]
Description: hypothetical protein NDAI_0I00810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.6e-11   43.5   0.0    1.2e-09   38.6   0.0    2.2  2  PseudoU_synth_1  tRNA pseudouridine synthase


Domain annotation for each model (and alignments):
>> PseudoU_synth_1  tRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0092   1.7e+02      50      70 ..      85     106 ..      36     131 .. 0.67
   2 !   38.6   0.0   6.6e-14   1.2e-09       3     102 ..     194     293 ..     192     299 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.0092
  PseudoU_synth_1  50 gsgFldhqVRamvgvl.favgq 70 
                        +++d++V+a ++++ ++v +
       CCD26650.1  85 RTARTDKGVHAAGNLIsLKVLM 106
                      4699*******99998666644 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 6.6e-14
  PseudoU_synth_1   3 kelvGthdfgsfckqkqek....kntvrtileaaieevsgeekellvvtvkgsgFldhqVRamvgvlfavgqgklspedvkellnakkrkkiav 92 
                       +++G+h+f +f+ +k+++    k++v++i+ a +  +++   e++ v+++g++F+ +q+R m  +++  ++ + + + v++l ++  +  + +
       CCD26650.1 194 NQYIGSHNFHNFTVKKTSTdlscKRYVKKIIIAPLVDMNNI--EWISVRLHGQSFMMNQIRKMLSLAIYLTRYDYPSSTVNSLFATDIK--VYI 283
                      79**********98888888888999999999999977777..7***************************************998875..689 PP

  PseudoU_synth_1  93 etapavglvl 102
                      + apa gl l
       CCD26650.1 284 PNAPASGLLL 293
                      9999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       602  (0.0335769); expected 358.6 (0.02)
Passed bias filter:                      438  (0.0244297); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 2554.63
//
Query:       CCD26651.1  [L=449]
Description: hypothetical protein NDAI_0I00820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.3e-84  283.2   0.2      3e-84  282.8   0.2    1.1  1  DAP3         Mitochondrial ribosomal death-associated protein
    1.3e-05   25.7   0.0    2.1e-05   24.9   0.0    1.4  1  AAA_16       AAA ATPase domain
     0.0061   16.5   0.0      0.013   15.4   0.0    1.6  1  RsgA_GTPase  RsgA GTPase
     0.0095   15.2   0.0      0.021   14.0   0.0    1.5  2  NB-ARC       NB-ARC domain
  ------ inclusion threshold ------
      0.012   15.8   0.0      0.023   15.0   0.0    1.6  1  AAA_22       AAA domain
      0.017   15.1   0.0      0.084   12.8   0.0    2.2  2  NTPase_1     NTPase
      0.022   14.8   0.0        2.4    8.3   0.0    2.4  2  T2SSG        Type II secretion system (T2SS), protein G
      0.062   12.8   0.0       0.12   11.8   0.0    1.4  1  AAA_7        P-loop containing dynein motor region
       0.13   12.2   0.0       0.43   10.5   0.0    1.9  2  NACHT        NACHT domain
       0.15   12.5   0.0       0.29   11.6   0.0    1.5  1  AAA          ATPase family associated with various cellular a
       0.16   11.7   0.0       0.26   11.0   0.0    1.3  1  AAA_30       AAA domain


Domain annotation for each model (and alignments):
>> DAP3  Mitochondrial ribosomal death-associated protein 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.8   0.2   1.9e-87     3e-84       1     312 []     123     443 ..     123     443 .. 0.98

  Alignments for each domain:
  == domain 1  score: 282.8 bits;  conditional E-value: 1.9e-87
                 ----SHHHHHHHHHTTS-SSS---EEEEE-SSSSSTTTTHHHHHHHGGGS--EEEEES-GGGGTSS-S--EEESTTSSEEE-HHHHHHHHHHHTTSSH. CS
        DAP3   1 llvReetlelikklkkadkkkkvkrlvltGekgsGKSvlLlqalayAlekgwvvlhvpeaedlvngtteyapseseeklyvQpeataalLsrilkaNe. 98 
                 +l+R+++   ++k+ +  k++k+ +++ltGe+g+GKSvlL+q+ a A++++++ +h++++e ++ng+++y+++e +++ly+Qp+++++l+++ilk N+ 
  CCD26651.1 123 SLIRKDS---TEKFINLLKESKDRKYILTGEPGVGKSVLLSQVQASAVDNNIISVHISYPELFLNGSNSYFYEE-SSNLYIQPMYLKKLIRKILKGNDp 217
                 5788888...8999999999******************************************************.***********************9 PP

                 HHHTT-EE-S-EE-SS...........S-EE-SSEEHHHHHHHHHH-SSSHHHHHHHHHHHHHHHTTSS--EEEEEE-GGGGSS-..BS---TTS--B- CS
        DAP3  99 evLkklklskeyellk...........resvkagstLleLvklgikdaksawdvfqallkeLkaqskgrvpvlvtvDglnallkn..tkyksadkkpih 184
                 +++++lkl+++y+l++            ++ +a+++L +L++l++++++ +   f a+++eL+ q +   p+++tvD+++++l+   ++y++ ++k+i+
  CCD26651.1 218 KLFQSLKLKNSYKLSNaspkdalsrpfVTLHPAKNSLFDLLNLKTQPRHLGE-QFSAIISELTLQDT--TPIYFTVDNFSRILTGafSNYRNVENKQIY 313
                 99*************************************************9.**************..***************99************* PP

                 GGGBHHHHTTHHH..HS--SSS-EEEEE---SS-SS--SS---HHHHHTTTTTGGG-S-E...................EEE-----GGGTHHHHHHHH CS
        DAP3 185 ahdLtlvkhfldllsgksklknggvvvaLaatsssntpksatlevallqeearpqldpYvkk..ydkrvaealk.gkvepieveglskeEarslleyya 280
                   dL+l+k ++d++sg  +++n +++v+L+ +++++t++  tl++al + ++    dpY+++  y++++ae+l+ g+v++++v++l+k+E+r ll++y+
  CCD26651.1 314 LLDLQLGKIIMDIVSGTVSFANPKSAVILSISGVDRTNR--TLPIALNKLPH----DPYITRyhYEPKFAELLQkGGVKEFQVSKLNKDEVRILLDFYL 406
                 ***************************************..***********....****9999*********************************** PP

                 HTT---ST.....TSSHHHHHHHHHTTSS-HHHHHHH CS
        DAP3 281 dsgvlqek.....vneelveeklslsgngnprelekl 312
                 +s++++++     + eel++ek++lsgngnprel+k+
  CCD26651.1 407 KSKIVLNRdvdnkSLEELTDEKYFLSGNGNPRELLKS 443
                 ******99999999********************996 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.3e-08   2.1e-05      25     145 ..     143     294 ..      72     300 .. 0.74

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.3e-08
      AAA_16  25 elvllsGesGvGKsslvrellralekd.........ggiflrgkcdqlesaipy....sa.laqalareellrqlldeaesaeleawrekleeala... 106
                 +  +l+Ge+GvGKs l+ +++ ++ ++           +fl+g +        +    s  ++q    ++l+r++l   + ++++  +   + +++   
  CCD26651.1 143 RKYILTGEPGVGKSVLLSQVQASAVDNniisvhisyPELFLNGSNSY------FyeesSNlYIQPMYLKKLIRKILKGNDPKLFQSLKL--KNSYKlsn 233
                 3468***********************56544444212334444444......235544446666666688999998855555554444..44444334 PP

      AAA_16 107 avpelagaea.........................srllellkrll.allsrderplvlvlDdlq 145
                 a    ++++a                         ++l e++++++ +l+ +d  p+++++D++ 
  CCD26651.1 234 A----SPKDAlsrpfvtlhpaknslfdllnlktqpRHLGEQFSAIIsELTLQDTTPIYFTVDNFS 294
                 2....333333344666666666888888899999999999999999999999999******985 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   7.9e-06     0.013      79     122 ..     122     165 ..      74     177 .. 0.80

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 7.9e-06
                  EEE--TTTHTTHHHHHHHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  79 vllvsaktkegleelkellkdktsvlvGqSGvGKStLinallpe 122
                  + l++++++e++ +l ++ kd+  +l G+ GvGKS L+ +++ +
   CCD26651.1 122 ISLIRKDSTEKFINLLKESKDRKYILTGEPGVGKSVLLSQVQAS 165
                  45566777888999999999******************999875 PP

>> NB-ARC  NB-ARC domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.3e-05     0.021       2      43 ..     127     165 ..     126     175 .. 0.88
   2 ?   -3.6   0.0         3   4.9e+03     154     187 ..     388     425 ..     382     439 .. 0.53

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.3e-05
                 HHHHHHHHHHHHCTTTSCSEEEEEEESTTSSHHHHHHHHCCS CS
      NB-ARC   2 eksvekviekLlekdelqslvvalvGmgGvGKttlakqilnk 43 
                 ++s ek i+ L e+++ +     l G +GvGK++l++q+  +
  CCD26651.1 127 KDSTEKFINLLKESKDRK---YILTGEPGVGKSVLLSQVQAS 165
                 678999*******99999...6689*************9765 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 3
                 EEESS--HHHH.....HHHHHHCCTS-GGCHH..CHHHH CS
      NB-ARC 154 ievelLekdea.....wellenkvfekkleekesleeva 187
                 ++v+ L+kde      + l +++v ++++++k+ lee+ 
  CCD26651.1 388 FQVSKLNKDEVrilldFYLKSKIVLNRDVDNKS-LEELT 425
                 556666666652221133445667777777664.55554 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   1.4e-05     0.023       7      31 ..     144     168 ..     138     264 .. 0.81

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.4e-05
      AAA_22   7 ilvvtGesGtGKTtllrrlleqlde 31 
                   ++tGe+G+GK++ll +++ +++ 
  CCD26651.1 144 KYILTGEPGVGKSVLLSQVQASAVD 168
                 579****************999863 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   5.2e-05     0.084       2      28 ..     145     171 ..     144     190 .. 0.84
   2 ?   -1.8   0.0       1.5   2.5e+03     129     163 ..     367     398 ..     357     401 .. 0.69

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 5.2e-05
                 EEEE--TTSSHHHHHHHHHHHH...GG CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssgv 28 
                  ++TG+pGvGK+ l+++v     ++++
  CCD26651.1 145 YILTGEPGVGKSVLLSQVQASAVDNNI 171
                 68****************988777765 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 1.5
                 EEE--SS--SHHHHHHHT-TT-EEEE--TTTTTTH CS
    NTPase_1 129 lavihrrkdlalveeirerkdvkvfevteenrdal 163
                 ++  h +  +++ e +++  +vk f+v++ n+d++
  CCD26651.1 367 ITRYHYE--PKFAELLQK-GGVKEFQVSKLNKDEV 398
                 5555555..455555555.5899999999999875 PP

>> T2SSG  Type II secretion system (T2SS), protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.0    0.0014       2.4      57     105 ..     226     275 ..     211     278 .. 0.84
   2 ?    4.0   0.0     0.032        52      62      77 ..     358     373 ..     345     398 .. 0.79

  Alignments for each domain:
  == domain 1  score: 8.3 bits;  conditional E-value: 0.0014
                 STTT-..-S----STT---EEE---SSSS-EEEE--TTS---SSSSSS-E CS
       T2SSG  57 egpYl.kkklpkDpWgnpyvyrspgehgefdllslGadgqeggegedadi 105
                 +++Y  +++ pkD+  +p+v ++p++++ fdll l +  ++ ge+ +a i
  CCD26651.1 226 KNSYKlSNASPKDALSRPFVTLHPAKNSLFDLLNLKTQPRHLGEQFSAII 275
                 567766999************************99998888888877776 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.032
                 .-S----STT---EEE CS
       T2SSG  62 kkklpkDpWgnpyvyr 77 
                  +klp+Dp+ ++y+y+
  CCD26651.1 358 LNKLPHDPYITRYHYE 373
                 589************8 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.5e-05      0.12      31      68 ..     140     177 ..     123     180 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 7.5e-05
       AAA_7  31 knkkpvllvGptGtGKtviikdllkkldkekylsltin 68 
                 +++++ +l+G+ G+GK+v+++++  +  +++++s++i+
  CCD26651.1 140 SKDRKYILTGEPGVGKSVLLSQVQASAVDNNIISVHIS 177
                 4568899***************7777666888777765 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00026      0.43       3      24 ..     145     166 ..     143     183 .. 0.82
   2 ?   -2.4   0.0       2.4   3.9e+03      17      63 ..     204     245 ..     202     298 .. 0.52

  Alignments for each domain:
  == domain 1  score: 10.5 bits;  conditional E-value: 0.00026
                 EEEEC-TTTCHHHHHHHHHHHH CS
       NACHT   3 vilqGeaGsGKTtLlqklalaw 24 
                  il+Ge+G+GK++Ll ++   +
  CCD26651.1 145 YILTGEPGVGKSVLLSQVQASA 166
                 689************9987655 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 2.4
                 HHHHHHHHCTS-SCCCC-SEEEEEETTTTTTS-...-HCHHHCCCCT CS
       NACHT  17 lqklalawaegklpqgafklvFflslrelsrsgnarsladllfsqlp 63 
                 l+kl++++ +g++p+     +  l+l+   + +na s++d l +++ 
  CCD26651.1 204 LKKLIRKILKGNDPKL----FQSLKLKNSYKLSNA-SPKDALSRPFV 245
                 5566666666665552....223333333333333.44444444444 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00018      0.29       2      35 ..     146     182 ..     145     212 .. 0.74

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 0.00018
                 EEESSTTSSHHHHHHHHHHHH...THEEEEEETTTCS CS
         AAA   2 llyGppGtGKTllakavakel...gvefleisgsell 35 
                 +l+G pG+GK+ l ++v  ++   ++  + is +el+
  CCD26651.1 146 ILTGEPGVGKSVLLSQVQASAvdnNIISVHISYPELF 182
                 79***************99975444555777777777 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00016      0.26      10      41 ..     134     165 ..     128     177 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00016
      AAA_30  10 vealltsgdrvavltGpAGtGKttalkalrea 41 
                 ++ l +s+dr  +ltG +G GK+ +l+++++ 
  CCD26651.1 134 INLLKESKDRKYILTGEPGVGKSVLLSQVQAS 165
                 55667899999****************99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       519  (0.0289475); expected 358.6 (0.02)
Passed bias filter:                      380  (0.0211947); expected 358.6 (0.02)
Passed Vit filter:                        70  (0.00390429); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.49u 0.26s 00:00:00.75 Elapsed: 00:00:00.38
# Mc/sec: 3537.64
//
Query:       CCD26652.1  [L=452]
Description: hypothetical protein NDAI_0I00830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    7.5e-59  198.8   1.0    9.8e-59  198.5   0.4    1.4  2  mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
    2.9e-34  117.9   0.3    5.7e-34  117.0   0.3    1.5  1  mRNA_cap_C       mRNA capping enzyme, C-terminal domain
    1.3e-08   34.8   0.0    9.9e-06   25.3   0.0    2.7  1  DNA_ligase_A_M   ATP dependent DNA ligase domain


Domain annotation for each model (and alignments):
>> mRNA_cap_enzyme  mRNA capping enzyme, catalytic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.5   0.4   1.6e-62   9.8e-59       1     195 []      43     246 ..      43     246 .. 0.93
   2 ?   -3.2   0.0       1.1   6.4e+03     113     125 ..     312     324 ..     293     353 .. 0.51

  Alignments for each domain:
  == domain 1  score: 198.5 bits;  conditional E-value: 1.6e-62
                      EEEE--T.THHHHHHHS-EEEEEEESSEEEEEEEEECT....EEEEEEETTS-EEEESSST-BTTSSSST...CTSBGGSEEEEEEEEEEECTT CS
  mRNA_cap_enzyme   1 qPvSler.enlekLkqkkYvvseKaDGiRylmllteee....egvylidRenevyrvenlrfprekdkek...lekvldetllDgElvidkvee 86 
                      qPvS+++ +  ekL +k+Y+v+eK+DG+R+lml+  ++    +g ++idRen++y+v+ +rfp  ++k+k   lek++d+t++DgElv+++++ 
       CCD26652.1  43 QPVSFQHsDMEEKLMEKDYYVCEKTDGLRVLMLILINPitreQGTFMIDRENNYYLVNGFRFPIMYKKKKeelLEKLQDGTIIDGELVLQTNPA 136
                      8******66778**********************999999999*********************9988778899*******************9 PP

                      .CEEEEEEEEEEEEEETTEEGTTSBHHHHHHHHHHHTHHHHHHHH...HTTCCCCTTSSSEEEE--EEETTHHHHHHHHCCCCCTTSTEEEEEE CS
  mRNA_cap_enzyme  87 .kkkelryliyDivaingvtvaeeplskRleilkkelikprneek...ktglletdkepfsvrlKefilleavaklleekfikklshesDGLIf 176
                       k+kelryl +D++aing++++++p++kRl +l+ e+  p++e +    ++ +  +++pf+++ K + +++ + +  ++++++kl+h sDGLIf
       CCD26652.1 137 tKMKELRYLAFDCLAINGRSLVQSPTDKRLGHLNNEFYMPYFELRkyyEQDYC--RTFPFKISPKRMDFSYRLMR--VADSLDKLPHMSDGLIF 226
                      889****************************************9954223333..459*****************..8999************* PP

                      EESSSB--SE.EEEEEEEE- CS
  mRNA_cap_enzyme 177 qpvkepyvag.rdsdllKwK 195
                      +p   py+ g +ds+llKwK
       CCD26652.1 227 TPISLPYQLGgKDSNLLKWK 246
                      ********998********9 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.1
                      HHHHHHHHHTHHH CS
  mRNA_cap_enzyme 113 kRleilkkelikp 125
                      k l++l++  +k+
       CCD26652.1 312 KELDLLERTYKKF 324
                      2233333332222 PP

>> mRNA_cap_C  mRNA capping enzyme, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.0   0.3   9.5e-38   5.7e-34       1     107 [.     250     394 ..     250     395 .. 0.98

  Alignments for each domain:
  == domain 1  score: 117.0 bits;  conditional E-value: 9.5e-38
                 GSEEEEEEEE................SSS--TTS--EEEEEEEES........................TEEEEEEEB---HH...HHHHHHHT-S--T CS
  mRNA_cap_C   1 eNtvDFklel................ekyedydakpkfellvleg........................ekyekfaelylseeekeeweelkslneeld 59 
                 eN+vDFkl l                ++y++yd kp+f+l+v+ g                        ++y+kfael +s+e   +w+elk+++e+l+
  CCD26652.1 250 ENSVDFKLILdipmvedpslpkkdpnRWYYNYDVKPTFQLHVWLGgadvntrlehfdepfskkeldlleRTYKKFAELNISDE---HWQELKNMEEPLN 345
                 7*******************************************************************999************...************* PP

                 TEEEEEEE-TT.S-EEEEEE-TT-SS--BHHHHHHHHHHHHTS--HHHH CS
  mRNA_cap_C  60 gkIvEcsldee.krWkllriRdDKsepNhisvvekvleSIednvteeeL 107
                 g+IvEc++d+e ++W++lr+RdDK ++Nh+svv+kvleSI+d+vt+e+L
  CCD26652.1 346 GRIVECTKDQEtGQWIMLRFRDDKLNGNHTSVVQKVLESINDSVTIEDL 394
                 *********88678*********************************98 PP

>> DNA_ligase_A_M  ATP dependent DNA ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.7e-09   9.9e-06      17     204 .]      56     246 ..      42     246 .. 0.64

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 1.7e-09
                     TTTSEEEEEEEESSEE....EEEE..EETTEEEEEETTS-B-GG...GCHHHHHHHHHHBSTTESE.EEEEEEEEEEETTTTCBEHHHHHCHHHH CS
  DNA_ligase_A_M  17 leekafivEiKyDGeR....aqvh..kegdkvklfSRrlkdita...akpelvkalkeafkkdeks.vilDGElvavdketgeilpfqklasrkk 101
                     l ek+ +v +K DG R    + ++    ++   ++ R+ + ++    ++p + k+ ke + ++ ++  i+DGElv++                  
      CCD26652.1  56 LMEKDYYVCEKTDGLRvlmlILINpiTREQGTFMIDRENNYYLVngfRFPIMYKKKKEELLEKLQDgTIIDGELVLQ------------------ 132
                     45566666667777775544333332233333344555555555666555555554444443333336777777772.................. PP

                     CHCCTHHHHHHSEEEEEEEEEEEETTEEHTTSCHHHHHHHHHHHB................--BTTTEEE--EEEESSHHHHHHHHHHHHHTTEC CS
  DNA_ligase_A_M 102 kkkkveeklkeaelclfvFDiLyldgesltdeplkeRrklLeeil................kesedrvelaeslevkdveeleelleeaiseglE 180
                         ++ ++k +el++++FD+L+++g sl++ p ++R   L++ +                +  + +++  ++   + +  +++ l++ + + ++
      CCD26652.1 133 ----TNPATKMKELRYLAFDCLAINGRSLVQSPTDKRLGHLNNEFympyfelrkyyeqdycRTFPFKISPKRMDFSYRLMRVADSLDK-LPHMSD 222
                     ....22233346899****************************999999999999888877444445555555555666666666655.445678 PP

                     EEEEEETT-CC-TTCEEEEEEEEE CS
  DNA_ligase_A_M 181 GlvvKnpdskYepgkrsknwlKvK 204
                     Gl+   ++ +Y+ g + +n+lK K
      CCD26652.1 223 GLIFTPISLPYQLGGKDSNLLKWK 246
                     999999999999998889999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       496  (0.0276647); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.37
# Mc/sec: 3639.20
//
Query:       CCD26653.1  [L=1470]
Description: hypothetical protein NDAI_0I00840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.5e-18   66.1   0.9    1.8e-17   63.3   0.1    2.6  2  BAH              BAH domain
    1.9e-14   53.2  53.8    8.3e-08   32.0  13.2    5.1  5  PHD              PHD-finger
    4.4e-13   49.4   8.6    4.4e-13   49.4   8.6    5.1  6  zf-HC5HC2H_2     PHD-zinc-finger like domain
    3.5e-11   43.2  37.4    5.2e-08   33.0   7.3    5.0  4  zf-HC5HC2H       PHD-like zinc-binding domain
      4e-05   23.1  28.0      0.002   17.6   6.5    4.8  3  PHD_2            PHD-finger
    9.4e-05   22.5   0.0    0.00025   21.2   0.0    1.8  1  Myb_DNA-binding  Myb-like DNA-binding domain
      0.006   16.4   2.9      0.006   16.4   2.9    5.3  5  C1_1             Phorbol esters/diacylglycerol binding domain
  ------ inclusion threshold ------
       0.33   11.3  57.4      0.095   13.0   4.5    6.3  6  C1_2             C1 domain


Domain annotation for each model (and alignments):
>> BAH  BAH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.1     8e-21   1.8e-17       3     113 ..     146     273 ..     144     281 .. 0.90
   2 ?   -0.3   0.1       0.4   8.9e+02      39      96 ..    1375    1435 ..    1219    1446 .. 0.80

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 8e-21
                 EETTGEEEEEETTSTTEEEEEEEEEE..............EEETTSTCEEEEEEEEEEECGGGS.TTTTHCCCTTEEEEEEEEEEEEGGGEEEEEEEEE CS
         BAH   3 yavGdfVyfddtstdepyqirrIeeL..............kenakneeaeatvlvdwflrpeet.ksalklrqkrElfltrqseilplaairgkcrVvl 86 
                 +++++ +y+ ++   epy+i+rI e+              k +++   + ++v+++w++rp+++ ++  + +++r ++++ +++i+p+ ++rgkc V++
  CCD26653.1 146 LKKDETIYMVSEPPGEPYYIGRIVEFvakqefadlidngkKLTDSFPAKYFNVNMNWYYRPRDIrERMTENFDSRLVYASLHEDICPIGSYRGKCLVLH 244
                 678899**************************99988886555566699************************************************** PP

                 HHHHCTECCHCH..HCSTTEEEEEEEEET CS
         BAH  87 lsdleeaqnylp..kklddtFycslvydp 113
                 + ++ ++ +++   + ++++F+++ ++d+
  CCD26653.1 245 KDEWRDVLPNELetIVRPNVFFFDQLFDR 273
                 *****98877666999********99997 PP

  == domain 2  score: -0.3 bits;  conditional E-value: 0.4
                  EEEEEEEEECGGGS..TTTTHCCCTTEEEEEEEEEEEEG.GGEEEEEEEEEHHHHCTECCH CS
         BAH   39 atvlvdwflrpeet..ksalklrqkrElfltrqseilpl.aairgkcrVvllsdleeaqny 96  
                   +++ +  l p+++  ++      k+ ++ +  ++i +  ++i   c+V++ s+  + +++
  CCD26653.1 1375 SNKNESLTLSPSQVpeNDYVSSNTKQCVYCSTTESIFWYrDNICHACTVLQSSKSMKKSEK 1435
                  4444455567777753333333344789999999999973468888999998887776665 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0  13.2   3.7e-11   8.3e-08       1      50 [.     348     396 ..     348     398 .. 0.93
   2 ?   -1.5   0.0       1.1   2.5e+03      39      51 ..     719     731 ..     711     732 .. 0.70
   3 !   25.5   8.5   4.1e-09   9.2e-06       2      51 ..    1115    1170 ..    1114    1171 .. 0.89
   4 ?   -2.1   0.1       1.6   3.6e+03      23      39 ..    1214    1230 ..    1213    1240 .. 0.74
   5 !   11.4   9.4    0.0001      0.23       2      32 ..    1253    1280 ..    1252    1285 .. 0.91

  Alignments for each domain:
  == domain 1  score: 32.0 bits;  conditional E-value: 3.7e-11
                 SBTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTH CS
         PHD   1 rCavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCk 50 
                 rC +Ck+ + ++++ ++Cd+Ck   H +Cl+pple+++++   w+C +C 
  CCD26653.1 348 RCYFCKE-WCQGNQSLCCDECKVMAHLYCLDPPLERKPNKGIVWICFNCL 396
                 6******.***************************8888777*******6 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 1.1
                 HHSSTBSSTTTHT CS
         PHD  39 kpegewlCekCke 51 
                  ++++++C  C+ 
  CCD26653.1 719 LSNTSFVCMFCTV 731
                 4455899**9985 PP

  == domain 3  score: 25.5 bits;  conditional E-value: 4.1e-09
                  BTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS.......TBSSTTTHT CS
         PHD    2 CavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpeg.......ewlCekCke 51  
                  C++Ck+ +   ++ + C +C+  +H +C++   +++e++         +wlC+ C++
  CCD26653.1 1115 CSICKE-QGLFNDCLECTNCGLNVHGSCYGTGPQKKENDVMlsvpnnyKWLCDPCSN 1170
                  ******.999*******************99888666655578999*********87 PP

  == domain 4  score: -2.1 bits;  conditional E-value: 1.6
                  CEEETTTSSSTHSHHSH CS
         PHD   23 rwfHqkClkppleseek 39  
                   w+H+ C  ++++ + +
  CCD26653.1 1214 AWCHVICALFNDDIKVQ 1230
                  69*****9998875554 PP

  == domain 5  score: 11.4 bits;  conditional E-value: 0.0001
                  BTTTTSTTSTTSCEEEETTTSCEEETTTSSS CS
         PHD    2 CavCkkksdeeeelvqCdgCkrwfHqkClkp 32  
                  C++C++   +++ l+qC+ C++ +H++C + 
  CCD26653.1 1253 CDICQQ---NGGGLLQCQCCNSNVHVTCAQE 1280
                  ******...79*****************875 PP

>> zf-HC5HC2H_2  PHD-zinc-finger like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   1.8   1.3e-05      0.03      38      85 ..     328     376 ..     316     385 .. 0.77
   2 ?   -4.3   0.0         8   1.8e+04      44      62 ..     712     730 ..     707     732 .. 0.71
   3 !    6.4   0.7    0.0042       9.5      54      85 ..    1111    1142 ..    1077    1166 .. 0.69
   4 ?   -4.7   0.9         8   1.8e+04       2       9 ..    1181    1188 ..    1180    1190 .. 0.76
   5 !   49.4   8.6   1.9e-16   4.4e-13      11      90 ..    1205    1283 ..    1200    1297 .. 0.91
   6 ?   -0.1   0.9      0.44   9.9e+02      40      65 ..    1382    1408 ..    1350    1434 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 1.3e-05
  zf-HC5HC2H_2  38 vaerepvd.vekikkerlkekCllCkkr.kGaciqCskkeCktafHvtCa 85 
                   +a+ +  + + + +++++ ++C++Ck+  +G +  C++ eCk + H +C 
    CCD26653.1 328 KANIDLSRnMPNEERSNWDSRCYFCKEWcQGNQSLCCD-ECKVMAHLYCL 376
                   443333333555566779*********99****99999.9*********5 PP

  == domain 2  score: -4.3 bits;  conditional E-value: 8
  zf-HC5HC2H_2  44 vdvekikkerlkekCllCk 62 
                   +d+e++  ++++  C++C+
    CCD26653.1 712 FDTENLSLSNTSFVCMFCT 730
                   5667777777788888885 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.0042
  zf-HC5HC2H_2   54 lkekCllCkkrkGa...ciqCskkeCktafHvtCa 85  
                     + +C++Ck++ G+   c++C++  C    H  C 
    CCD26653.1 1111 KTFSCSICKEQ-GLfndCLECTN--CGLNVHGSCY 1142
                    3678*****96.66111555555..9999**9996 PP

  == domain 4  score: -4.7 bits;  conditional E-value: 8
  zf-HC5HC2H_2    2 eCvlCkkk 9   
                    +C+lC +k
    CCD26653.1 1181 SCCLCYSK 1188
                    69999876 PP

  == domain 5  score: 49.4 bits;  conditional E-value: 1.9e-16
  zf-HC5HC2H_2   11 GalkktsderwvHvlCallvpevsfsnvaerepvd..vekikkerlkekCllCkkrkGaciqCskkeCktafHvtCalaagl 90  
                     alk t d++w Hv+Cal+++ ++++n ++ +p+   v++i+k+   +kC +C+++ G  +qC+   C++  HvtCa++++l
    CCD26653.1 1205 NALKPTIDGAWCHVICALFNDDIKVQNSNKLQPICntVSTIMKN-RANKCDICQQNGGGLLQCQC--CNSNVHVTCAQESNL 1283
                    589******************************97756677666.599***************99..***********9876 PP

  == domain 6  score: -0.1 bits;  conditional E-value: 0.44
  zf-HC5HC2H_2   40 erepvd.vekikkerlkekCllCkkrk 65  
                    + +p +  e+   +  +++C++C++++
    CCD26653.1 1382 TLSPSQvPENDYVSSNTKQCVYCSTTE 1408
                    333333212222233688999999873 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   3.8   1.3e-05     0.029      10      66 ..     322     376 ..     317     379 .. 0.79
   2 !   10.6   2.3   0.00023      0.52      33      87 ..    1109    1166 ..    1084    1169 .. 0.62
   3 !   33.0   7.3   2.3e-11   5.2e-08       1      71 [.    1217    1283 ..    1217    1323 .. 0.86
   4 ?    0.7   1.2      0.28   6.3e+02      17      45 ..    1375    1407 ..    1360    1430 .. 0.58

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.3e-05
  zf-HC5HC2H  10 evvfeeekeiemeeiedvekikkerkklkCylCkkk.vGaciqCskkkCkkafHvtCa 66 
                 ++vf+e+ +      +++ ++++++++ +Cy+Ck+  +G    C+  +Ck + H++C 
  CCD26653.1 322 KYVFKEKAN--IDLSRNMPNEERSNWDSRCYFCKEWcQGNQSLCCD-ECKVMAHLYCL 376
                 556655555..3556789999*************876788888887.8*********6 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00023
  zf-HC5HC2H   33 erkklkCylCkkk..vGaciqCskkkCkkafHvtCakeagllleee...eekeklksyCk 87  
                    k+ +C++Ck++     c++C+  +C  + H  C      + e++   +  +++k +C+
  CCD26653.1 1109 PGKTFSCSICKEQglFNDCLECT--NCGLNVHGSCYGTGPQKKENDvmlSVPNNYKWLCD 1166
                  356789*******3334555555..5*********8665555554444444456666665 PP

  == domain 3  score: 33.0 bits;  conditional E-value: 2.3e-11
  zf-HC5HC2H    1 HvvCalwipevvfeeekeiemeeiedvekikkerkklkCylCkkkvGaciqCskkkCkkafHvtCakeagl 71  
                  Hv+Cal+ ++++++++++    +i +  +   +++++kC +C+++ G  +qC+   C+++ HvtCa+e++l
  CCD26653.1 1217 HVICALFNDDIKVQNSNK--LQPICNTVSTIMKNRANKCDICQQNGGGLLQCQC--CNSNVHVTCAQESNL 1283
                  9***********999887..56666555555556677***************99..***********9876 PP

  == domain 4  score: 0.7 bits;  conditional E-value: 0.28
  zf-HC5HC2H   17 ke...iemeeiedv.ekikkerkklkCylCkkk 45  
                  ++     + ++++v e+   ++++++C++C+++
  CCD26653.1 1375 SNkneSLTLSPSQVpENDYVSSNTKQCVYCSTT 1407
                  3322323344444425666788999*****976 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   3.8   0.00094       2.1       2      35 ..     359     395 ..     358     396 .. 0.83
   2 !   17.6   6.5   8.9e-07     0.002       2      35 ..    1125    1168 ..    1124    1169 .. 0.83
   3 !    7.0   2.2    0.0019       4.3       4      26 ..    1263    1285 ..    1261    1288 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 0.00094
       PHD_2   2 npllsCdkCsvaVHasCYGvskesdgee...WlCrrC 35 
                 n+ l Cd+C+v+ H  C   + e + ++   W+C  C
  CCD26653.1 359 NQSLCCDECKVMAHLYCLDPPLERKPNKgivWICFNC 395
                 67799************98777776665677***999 PP

  == domain 2  score: 17.6 bits;  conditional E-value: 8.9e-07
       PHD_2    2 npllsCdkCsvaVHasCYGvskesdgee..........WlCrrC 35  
                  n  l C +C + VH sCYG  +++++++          WlC+ C
  CCD26653.1 1125 NDCLECTNCGLNVHGSCYGTGPQKKENDvmlsvpnnykWLCDPC 1168
                  55689*****************9999776777777777888877 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0019
       PHD_2    4 llsCdkCsvaVHasCYGvskesd 26  
                  ll+C+ C+  VH  C   s+  d
  CCD26653.1 1263 LLQCQCCNSNVHVTCAQESNLHD 1285
                  89*************98776655 PP

>> Myb_DNA-binding  Myb-like DNA-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   1.1e-07   0.00025       3      46 .]     595     638 ..     593     638 .. 0.96

  Alignments for each domain:
  == domain 1  score: 21.2 bits;  conditional E-value: 1.1e-07
                      SSBHHHHHHHHHHHHHHTTCHHHHHHHHTSS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 kWteeEdelLleavkkhGnrWkkIaerlggRtekqcrsrwrnyl 46 
                       +t+eE +++++av+k+G+  + + e++ +    ++  +++n++
       CCD26653.1 595 TFTPEELKRFEDAVRKYGGELRPVCEEVKTQPMAMIVRFFYNWK 638
                      69****************************************96 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   9.2   0.00047       1.1      12      43 ..     347     376 ..     340     378 .. 0.92
   2 !   16.4   2.9   2.7e-06     0.006      13      47 ..    1114    1146 ..    1107    1152 .. 0.87
   3 ?   -2.6   2.2       2.3   5.2e+03      14      34 ..    1165    1185 ..    1160    1188 .. 0.85
   4 !    9.0   7.5   0.00055       1.2      11      45 ..    1250    1280 ..    1244    1284 .. 0.86
   5 ?   -1.4   1.2      0.98   2.2e+03       7      35 ..    1397    1422 ..    1392    1425 .. 0.52

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00047
                 -B-TTT-SB--SSSS-EEEETTT--EE-CCCC CS
        C1_1  12 tfCkhCgeflwgkekqglkCswCkllvHkkCh 43 
                 ++C  C+e +  ++ q l+C++Ck+ +H  C+
  CCD26653.1 347 SRCYFCKEWC--QGNQSLCCDECKVMAHLYCL 376
                 68********..*****************997 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 2.7e-06
                  B-TTT-SB--SSSS-EEEETTT--EE-CCCCTTS- CS
        C1_1   13 fCkhCgeflwgkekqglkCswCkllvHkkChekvp 47  
                   C+ C+e+   ++  +l C++C+l+vH +C+   p
  CCD26653.1 1114 SCSICKEQG--LFNDCLECTNCGLNVHGSCYGTGP 1146
                  6******98..9******************97655 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 2.3
                  -TTT-SB--SSSS-EEEETTT CS
        C1_1   14 CkhCgeflwgkekqglkCswC 34  
                  C+ C + l    ++ ++C  C
  CCD26653.1 1165 CDPCSNDLNPIISTTYSCCLC 1185
                  999999996699999999888 PP

  == domain 4  score: 9.0 bits;  conditional E-value: 0.00055
                  --B-TTT-SB--SSSS-EEEETTT--EE-CCCCTT CS
        C1_1   11 ptfCkhCgeflwgkekqglkCswCkllvHkkChek 45  
                   ++C+ C++         l+C++C+ +vH  C++ 
  CCD26653.1 1250 ANKCDICQQNG----GGLLQCQCCNSNVHVTCAQE 1280
                  67899999987....889**************975 PP

  == domain 5  score: -1.4 bits;  conditional E-value: 0.98
                  --SS--B-TTT-SB--SSSS-EEEETTT- CS
        C1_1    7 nfkqptfCkhCgeflwgkekqglkCswCk 35  
                  n+kq  +C++ ++++   +++   C++C 
  CCD26653.1 1397 NTKQCVYCSTTESIF---WYRDNICHACT 1422
                  444444454444444...55555566664 PP

>> C1_2  C1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.5   0.00047       1.1      11      46 ..     339     375 ..     324     376 .. 0.87
   2 ?   -1.3   0.1       1.2   2.8e+03      14      31 ..     719     736 ..     713     739 .. 0.73
   3 ?   13.0   4.5   4.2e-05     0.095      17      46 ..    1111    1141 ..    1099    1142 .. 0.87
   4 ?    2.0   2.9      0.12   2.6e+02      14      38 ..    1158    1185 ..    1153    1192 .. 0.76
   5 ?   10.2   7.1   0.00033      0.75      16      47 .]    1248    1278 ..    1238    1278 .. 0.86
   6 ?    1.6   0.9      0.16   3.7e+02       7      38 ..    1381    1421 ..    1375    1425 .. 0.68

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00047
        C1_2  11 kgedssesfnCsaCgrkidgff.YsCseCdfslhvrC 46 
                 ++e s+ + +C  C++  +g++   C+eC+++ h  C
  CCD26653.1 339 NEERSNWDSRCYFCKEWCQGNQsLCCDECKVMAHLYC 375
                 56778899*********999999*************9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 1.2
        C1_2  14 dssesfnCsaCgrkidgf 31 
                  s+ sf C  C  + +++
  CCD26653.1 719 LSNTSFVCMFCTVDYSPM 736
                 5688999**999885555 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 4.2e-05
        C1_2   17 esfnCsaCgrk.idgffYsCseCdfslhvrC 46  
                  ++f+Cs+C+++  ++++ +C+ C  ++h +C
  CCD26653.1 1111 KTFSCSICKEQgLFNDCLECTNCGLNVHGSC 1141
                  579********777777************** PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.12
        C1_2   14 dssesfnCsaCgrkidgff...YsCseC 38  
                  + + ++ C+ C ++ ++     YsC  C
  CCD26653.1 1158 PNNYKWLCDPCSNDLNPIIsttYSCCLC 1185
                  5667899*******66665666***667 PP

  == domain 5  score: 10.2 bits;  conditional E-value: 0.00033
        C1_2   16 sesfnCsaCgrkidgffYsCseCdfslhvrCa 47  
                  +   +C++C++++ g    C+ C+ ++hv+Ca
  CCD26653.1 1248 NRANKCDICQQNG-GGLLQCQCCNSNVHVTCA 1278
                  56689*******7.6669**88*********8 PP

  == domain 6  score: 1.6 bits;  conditional E-value: 0.16
        C1_2    7 Ltls......kgedssesfnCsaCgrk..idgff.YsCseC 38  
                  Ltls      ++  ss++++C  C ++  i+ ++  +C  C
  CCD26653.1 1381 LTLSpsqvpeNDYVSSNTKQCVYCSTTesIFWYRdNICHAC 1421
                  666666666666678888*******9954444444456556 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1470 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1273  (0.0710023); expected 358.6 (0.02)
Passed bias filter:                      360  (0.0200792); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.85u 0.31s 00:00:01.15 Elapsed: 00:00:00.47
# Mc/sec: 9417.63
//
Query:       CCD26654.1  [L=1252]
Description: hypothetical protein NDAI_0I00850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.8e-35  121.5   0.5    8.2e-35  119.4   0.5    2.3  1  WAC_Acf1_DNA_bd  ATP-utilising chromatin assembly and remodel
    6.9e-11   42.5   0.0    6.9e-11   42.5   0.0    4.5  5  WSD              Williams-Beuren syndrome DDT (WSD), D-TOX E 
      9e-11   41.9   1.5    1.2e-09   38.4   0.2    2.9  3  DDT              DDT domain
    0.00028   20.3   0.1     0.0008   18.9   0.1    1.8  1  WHIM1            WSTF, HB1, Itc1p, MBD9 motif 1


Domain annotation for each model (and alignments):
>> WAC_Acf1_DNA_bd  ATP-utilising chromatin assembly and remodelling N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.5   1.8e-38   8.2e-35       2     101 .]      25     124 ..      24     124 .. 0.99

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 1.8e-38
  WAC_Acf1_DNA_bd   2 vfvikqTgEvftdyeeylerldlykqkvftceitgksnltyfeAlesEkeaskeleekfpealkkpvlelvqfstrsrlddLvedvyeelkerf 95 
                      v++i++TgE+f +yeey+erld+y+++ ftceitg+s+lt+feAl+sE+++ k +eekfp +l++p+ ++ +f+ ++rld Lve+vy+++k++f
       CCD26654.1  25 VWHIDETGEWFPTYEEYIERLDFYTRHHFTCEITGTSCLTFFEALDSEESQFKFVEEKFPLKLREPIARFLHFNGIRRLDALVEQVYSKFKNDF 118
                      8********************************************************************************************* PP

  WAC_Acf1_DNA_bd  96 fvgEeV 101
                      f+gE V
       CCD26654.1 119 FPGEIV 124
                      ****87 PP

>> WSD  Williams-Beuren syndrome DDT (WSD), D-TOX E motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.2  10.9         4   1.8e+04      74      74 ..     361     361 ..     313     451 .. 0.60
   2 ?   -3.7   0.0       3.9   1.7e+04      61      83 ..     510     532 ..     507     533 .. 0.88
   3 ?   -3.3   0.0       2.9   1.3e+04      24      44 ..     642     667 ..     637     701 .. 0.62
   4 !   42.5   0.0   1.5e-14   6.9e-11       2      94 ..     856    1025 ..     855    1029 .. 0.93
   5 ?   -3.1   0.3       2.5   1.1e+04      37      57 ..    1074    1094 ..    1058    1108 .. 0.48

  Alignments for each domain:
  == domain 1  score: -10.2 bits;  conditional E-value: 4
         WSD  74 l 74 
                 +
  CCD26654.1 361 I 361
                 1 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 3.9
         WSD  61 eegewavysskeqleeLiesLnp 83 
                 +++++ ++++ +++ ++++ Ln+
  CCD26654.1 510 NPNKFHYFKDFQKILQIYQFLNT 532
                 689999********999999996 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.9
         WSD  24 rlfveepsegdievllekre.......e 44 
                 rlfv e+  g+++++ + +         
  CCD26654.1 642 RLFVNEE--GEWTCVINDDYltnkgfiD 667
                 7888855..4477776665544444441 PP

  == domain 4  score: 42.5 bits;  conditional E-value: 1.5e-14
         WSD    2 rlkpLGkDRfyrrYwlfd...................kgtgrlfveepsegdievllekre.................................... 43  
                  rlk+LG DR+ +rY++fd                   ++tgr++v++ps +  e++l+ +e                                    
  CCD26654.1  856 RLKHLGLDRYGNRYFWFDitgiqleeevdgnktsssnYHTGRIWVQGPSISTAEFILNITEqeikkwmkissdngkiaatrevfgvyrddsgvfyqv 952 
                  789*******************************************************9999*********************************** PP

         WSD   44 .....................ekesekrr.eeeeeeevleegewavysskeqleeLiesLnprgvREsaLkea 94  
                                        ++ +k+  +e+ e  +l+e++w+ +++ +++ ++i+++++ g  E++L ++
  CCD26654.1  953 ldndtqvelvnsegvfnslleLTPIQKKIiDETPECLLLDENQWYSIENFDDFSAFIDWFDTWGRKEHDLLRQ 1025
                  ********************7334444445666777899******************************9865 PP

  == domain 5  score: -3.1 bits;  conditional E-value: 2.5
         WSD   37 vllekreekesekrreeeeee 57  
                  + ++ ++e+++++ +ee+e+e
  CCD26654.1 1074 ETQRAETEDDRKHLEEEKEQE 1094
                  222222233333333222222 PP

>> DDT  DDT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.2   2.6e-13   1.2e-09       2      49 ..     519     563 ..     518     569 .. 0.89
   2 ?    1.0   0.0      0.12   5.3e+02      39      59 ..     627     646 ..     612     647 .. 0.76
   3 ?   -3.3   0.0       2.7   1.2e+04      14      23 ..     757     766 ..     757     777 .. 0.88

  Alignments for each domain:
  == domain 1  score: 38.4 bits;  conditional E-value: 2.6e-13
         DDT   2 dfgdlLmvweFLhvFgelLgLspftlddlesALlsqdpmgpseLlaei 49 
                 df+++L++++FL++F   + Ls f ld+++ +L ++dp   seL  e+
  CCD26654.1 519 DFQKILQIYQFLNTFNHQIFLSYFNLDQFITSLKCTDP---SELNGEL 563
                 8************************************9...6775554 PP

  == domain 2  score: 1.0 bits;  conditional E-value: 0.12
         DDT  39 pmgpseLlaeihiaLLkallr 59 
                 ++g s Ll e +++LL++ ++
  CCD26654.1 627 NNG-SALLIEAFVSLLRLFVN 646
                 333.69***********9875 PP

  == domain 3  score: -3.3 bits;  conditional E-value: 2.7
         DDT  14 hvFgelLgLs 23 
                 ++F++ L+Ls
  CCD26654.1 757 RNFCTQLSLS 766
                 58******97 PP

>> WHIM1  WSTF, HB1, Itc1p, MBD9 motif 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.8e-07    0.0008       4      42 ..     748     787 ..     745     791 .. 0.88

  Alignments for each domain:
  == domain 1  score: 18.9 bits;  conditional E-value: 1.8e-07
                 -GGG-CCCCCSTCCCS-HHHHHHHHHHHHHHHCCC.-CCH CS
       WHIM1   4 dpllpdeLakggYyeLspeeklkiLkiLcdlllss.savR 42 
                   +lp++L++  +  Ls +ek+++L+iL+dl+ ++ + ++
  CCD26654.1 748 STQLPRQLWRNFCTQLSLSEKVTALWILVDLVTNYsNDIK 787
                 6789*****************************9966555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1252 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2941  (0.164036); expected 358.6 (0.02)
Passed bias filter:                      572  (0.0319036); expected 358.6 (0.02)
Passed Vit filter:                       158  (0.00881254); expected 17.9 (0.001)
Passed Fwd filter:                        54  (0.00301188); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 1.38u 0.33s 00:00:01.71 Elapsed: 00:00:00.50
# Mc/sec: 7528.20
//
Query:       CCD26655.1  [L=543]
Description: hypothetical protein NDAI_0I00860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.6e-17   62.8   1.9      3e-16   60.2   1.9    2.2  1  Cyclin    Cyclin
  ------ inclusion threshold ------
       0.01   15.9   0.0        2.5    8.4   0.0    3.1  2  PMBR      Pseudomurein-binding repeat


Domain annotation for each model (and alignments):
>> Cyclin  Cyclin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   1.9   3.3e-20     3e-16      14     157 ..     193     518 ..     181     521 .. 0.78

  Alignments for each domain:
  == domain 1  score: 60.2 bits;  conditional E-value: 3.3e-20
                 HHHHHH--------------T.....................T--SS-................................................... CS
      Cyclin  14 lvanndetatasadsksnlensqkqssshtkttfaqtpkessFatkav................................................... 61 
                 ++++ ++t  +  d ++++ +s + +s h +t++     +s+F+++                                                     
  CCD26655.1 193 TPTTRPSTRSTFGDTNIDSMDSLITTSHHSRTNIFSHMSMSQFESRSRsrspslspppmirsnsheienhlrvaspfnlsrsisrqnnntnntldnhnf 291
                 555555666666666777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                 ................................................................................................... CS
      Cyclin  62 ................................................................................................... 61 
                                                                                                                    
  CCD26655.1 292 fmnkndslidgidtisndisnfsiqhspefnhetlqfenlekpikrilsshnsngttdedtsllsadalnkysndfieippqealnnlketfsiflkls 390
                 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 PP

                 ..........................-SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHH........H-TT---STTTHHHHHHHHHHHHHHHH-SS CS
      Cyclin  62 ..........................paisigsylsrlqkfgesaplvllgtliYldrivk......rcvsealvvtsanihRllivallvatKflvDl 128
                                           p++    yl r++  +e    ++l + + l+ +          ++ ++ ++s+  hRl+i+ ++++tK l+D 
  CCD26655.1 391 kndiqeneaasdstmirysnfkmkslPSLTFELYLDRIHTKCEYDSHIYLIATYLLQTLFLerdstsNSLKLKMKLESTETHRLIIATIRISTKLLEDH 489
                 77777777777777777777777777***********************99998888887667777788899999************************ PP

                 ---HHHHHHHHTS-HHHHHHHHHHHHHHT CS
      Cyclin 129 sysnekfakvggislkELnkLEidFlflv 157
                 + s+e+f kv gis k L kLEi+ l+ +
  CCD26655.1 490 VHSHEYFCKVCGISKKLLSKLEISLLLCL 518
                 ************************99765 PP

>> PMBR  Pseudomurein-binding repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00028       2.5       8      24 ..     153     169 ..     151     170 .. 0.93
   2 ?    4.0   0.0    0.0067        60       3      25 ..     324     346 ..     322     347 .. 0.91

  Alignments for each domain:
  == domain 1  score: 8.4 bits;  conditional E-value: 0.00028
        PMBR   8 eeyldmasrvlafiesn 24 
                 e++l+ as+v+++i++n
  CCD26655.1 153 EDLLRSASQVNNYITEN 169
                 789************98 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.0067
        PMBR   3 gkisyeeyldmasrvlafiesng 25 
                 +++ +e++ + ++r+l+ ++sng
  CCD26655.1 324 ETLQFENLEKPIKRILSSHNSNG 346
                 78999999999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      275  (0.0153383); expected 358.6 (0.02)
Passed Vit filter:                        15  (0.000836633); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.23s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 3951.61
//
Query:       CCD26656.1  [L=321]
Description: hypothetical protein NDAI_0I00870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.7e-50  170.9   0.0    3.5e-50  170.6   0.0    1.2  1  FtsJ             FtsJ-like methyltransferase
     0.0045   16.8   0.0      0.024   14.5   0.0    2.1  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.014   15.2   0.2        7.4    6.4   0.7    2.5  2  Methyltransf_31  Methyltransferase domain
      0.082   12.8   0.2      0.082   12.8   0.2    1.8  3  LMP              LMP repeated region


Domain annotation for each model (and alignments):
>> FtsJ  FtsJ-like methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.6   0.0   7.8e-54   3.5e-50       2     176 ..      60     308 ..      59     309 .. 0.97

  Alignments for each domain:
  == domain 1  score: 170.6 bits;  conditional E-value: 7.8e-54
                 CCCHHHHHHHHHHHHT-S-..TT-EEEECT-TTSHHHHHHCCT.T.-SEEEEEESSSSHHHTTEEEECS-CCCSSHHHHHCHCHHH............. CS
        FtsJ   2 rsRsayKLleidekfklfk..pgktvvDlgaaPGgwsqvllqrlgakgkvvavDlqpmaplpgvttiqgditdpetiekikealse............. 85 
                 +sR+a+KL+eid+kf+lf+  +++ ++Dlg+aPG+wsqv+  r  +++++++vD+ p++p+ gv+ iq++i++ +t+e+i+ + s+             
  CCD26656.1  60 KSRAAFKLIEIDDKFHLFNksKTQSILDLGFAPGAWSQVIKSRSSPDSMILGVDILPCTPPHGVSAIQANILSRKTHELIRLFYSKhfklntidklhkn 158
                 79****************8567788******************9889*********************************97777788999999***** PP

                 ...................................SSEEEEEE--S-........................SS-CHHHHHHHHHCCCCHHHHCCHCCCC CS
        FtsJ  86 ...................................rkvdlvvsDgap........................dvsgvhdldeylqsqLllaalelalkll 125
                                                    +++d+++sD+                          ++sg ++ d++ +++L++aal +a++ll
  CCD26656.1 159 hgyfqhmleeelirlketetykevfssddnskiikSPIDIILSDMYApwpqdfnskfsmnnitnnayirmaNTSGLTVRDHAHSIDLCDAALITAIDLL 257
                 *********************************************977*************************************************** PP

                 ECCCEEEECCCHCCCHHHHHHHHHCCEEEEEEEE-SS--CCG-EEEEEEEE CS
        FtsJ 126 kpggtfvlkifrgeeteallkqlkkfFekvsvvkPkssrsesseeflvcrg 176
                 kp+g+fv+k+f+g e++ ++k+++k+F++++ +kPkssr+es+e++++ ++
  CCD26656.1 258 KPKGNFVCKLFTGNEDKLFEKRVRKVFQDCYRFKPKSSRNESKEVYIIGLN 308
                 ************************************************987 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.3e-06     0.024      17     120 ..      77     268 ..      40     287 .. 0.59

  Alignments for each domain:
  == domain 1  score: 14.5 bits;  conditional E-value: 5.3e-06
  Methyltransf_23  17 lpklraggrvLdiGcGtGillevlrengf...svtgvDlspeaveiae.............................................. 61 
                      + ++ + +++Ld+G + G +++v++ +      + gvD+ p   +                                                 
       CCD26656.1  77 F-NKSKTQSILDLGFAPGAWSQVIKSRSSpdsMILGVDILPCTPPHGVsaiqanilsrkthelirlfyskhfklntidklhknhgyfqhmleee 169
                      2.345566****************66644464566***98755544445777888888888888887777777776665555555555555554 PP

  Methyltransf_23  62 .......kakkaqkdqfdeqeaaepqg..........................................kfdlIvlrevlehvpdppellrqia 106
                             +++k ++++          +                                           +   + r+  ++++   ++l ++ 
       CCD26656.1 170 lirlketETYKEVFSSD---------DnskiikspidiilsdmyapwpqdfnskfsmnnitnnayirmaNTSGLTVRDHAHSIDLCDAALITAI 254
                      44444443333333333.........02223333223333333333333344444444444444555555555666666666666668888888 PP

  Methyltransf_23 107 tllkpgGylllsep 120
                      +llkp G++++  +
       CCD26656.1 255 DLLKPKGNFVCKLF 268
                      88888888777766 PP

>> Methyltransf_31  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0021       9.2       2      36 ..      80     114 ..      79     117 .. 0.93
   2 ?    6.4   0.7    0.0017       7.4      73     124 ..     194     282 ..     154     309 .. 0.71

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0021
  Methyltransf_31   2 dkglrvlDlGCGtGeltfelaeelgpkaevvGiDi 36 
                      +k+ ++lDlG + G+ + ++ ++  p++ + G+Di
       CCD26656.1  80 SKTQSILDLGFAPGAWSQVIKSRSSPDSMILGVDI 114
                      57789*****************************8 PP

  == domain 2  score: 6.4 bits;  conditional E-value: 0.0017
  Methyltransf_31  73 ekfDlilsn...............................evl.....naladpdkileeiervlkpggilliedpr.llaelp.akvee 124
                      +++D+ils+                                       + +  +d++l  ++++lkp+g +++  +   +++l  + v++
       CCD26656.1 194 SPIDIILSDmyapwpqdfnskfsmnnitnnayirmantsgL-TvrdhaHSIDLCDAALITAIDLLKPKGNFVCKLFTgNEDKLFeKRVRK 282
                      56666666666666666666666666666666666655541.14566599999*******************998883333333444444 PP

>> LMP  LMP repeated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.2   1.8e-05     0.082      39      70 ..      53      84 ..      42      90 .. 0.89
   2 ?   -3.0   0.1       1.3   5.9e+03     104     119 ..     175     190 ..     144     198 .. 0.48
   3 ?   -3.9   0.1       2.6   1.2e+04     107     125 ..     213     231 ..     209     237 .. 0.66

  Alignments for each domain:
  == domain 1  score: 12.8 bits;  conditional E-value: 1.8e-05
         LMP 39 tasmqsakssLdakvteitkkLekFnkdkeak 70
                +a++q++ks   +k++ei++k + Fnk+k + 
  CCD26656.1 53 EAKLQNLKSRAAFKLIEIDDKFHLFNKSKTQS 84
                5789*************************986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 1.3
         LMP 104 kkdsknsvtkssnkse 119
                 + ++ + v +s + s 
  CCD26656.1 175 ETETYKEVFSSDDNSK 190
                 2222334444444444 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 2.6
         LMP 107 sknsvtkssnkseieaane 125
                 sk s+ +  n   i  an+
  CCD26656.1 213 SKFSMNNITNNAYIRMANT 231
                 4556666666666777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       751  (0.0418874); expected 358.6 (0.02)
Passed bias filter:                      425  (0.0237046); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.27s 00:00:00.76 Elapsed: 00:00:00.43
# Mc/sec: 2262.81
//
Query:       CCD26657.1  [L=888]
Description: hypothetical protein NDAI_0I00880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.9e-145  484.7   1.2   8.9e-145  483.1   0.4    2.1  2  Coatomer_WDAD  Coatomer WD associated region
      4e-33  112.9   6.8    6.5e-06   26.8   0.0    7.8  8  WD40           WD domain, G-beta repeat
    2.2e-05   23.3   3.1      0.002   16.9   0.1    3.5  4  Nup160         Nucleoporin Nup120/160
     0.0025   17.8   0.0         16    5.6   0.0    5.0  4  BBS2_Mid       Ciliary BBSome complex subunit 2, middle regio
     0.0033   17.5   0.9       0.69   10.0   0.1    3.4  3  MIT            MIT (microtubule interacting and transport) do
  ------ inclusion threshold ------
       0.33   10.8   3.0         40    4.3   0.0    3.9  3  TPR_1          Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> Coatomer_WDAD  Coatomer WD associated region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.17   5.1e+02      34     194 ..     101     280 ..      80     286 .. 0.60
   2 !  483.1   0.4    3e-148  8.9e-145       2     444 ..     328     792 ..     327     793 .. 0.94

  Alignments for each domain:
  == domain 1  score: -0.6 bits;  conditional E-value: 0.17
                    XXXXXXXXXXXXXXXX.XXXXXXXXXX.XXXXXXXXXXXXXX.....XXXXX..XXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXX.... CS
  Coatomer_WDAD  34 ypqslshnpngrfvlV.cgdgeyiiyt.alalrnkaygkgld.....fvwvs..snrfavlessksvkifknfkekktksikleyqvdkifg.... 116
                    y++s++ +p++ ++l   +d ++++ + +++++ +++ +g++     +++++   + fa     ++vk+  ++ +++  +++l++  +k +     
     CCD26657.1 101 YIRSIAVHPTKPYILSaSDDMTIKLWNwEKQWDLQQTFQGHEhfvmcVAFNPkdPTTFASACLDRTVKV-WSLGQST-PNFTLNTGQEKGVNyvdy 194
                    556666666666666534444444444644444444444432111113344343444666666666776.4443333.355555544443333555 PP

                    ......XXXXXXXXXX.XXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.............XXXXXX CS
  Coatomer_WDAD 117 ......GalLgvksegsvsfYDweqgklvrridvk..kvknVvwsddgelvalvskdtvyilsynleaveeedeeegvedafevlh 194
                           +l  ++++++v ++D ++++ v+ ++ +  +v+  +  ++  ++   s+d  +i+  ++ + +ee  + g+e a +v +
     CCD26657.1 195 yplpdkPYLVTASDDHTVKIWDYQTKSCVATLSKHtaNVSFAIFHPSLPVIVSGSEDGQVIAWNSSTYRHEEIANMGMERAWCVAT 280
                    66666667778888888999999999999988855224777777777666666677777777777777777888888888888765 PP

  == domain 2  score: 483.1 bits;  conditional E-value: 3e-148
                    XXXXXXXXXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXX.XX CS
  Coatomer_WDAD   2 sevrqanikkkeelkdgellslqlkelgsieiypqslshnpngrfvlVcgdgeyiiytalalrnkaygkgldfvwvs.snrfavlessksvkifkn 96 
                    s++++a i+++ee+++ge+l lq+kelgs+++ p+ l h+pngrfv+V gd+ey iytala+rnk++g+++ fvw++ sn++av+++  ++ ++kn
     CCD26657.1 328 SDIFTAAIRGTEEVEEGEPLALQTKELGSVDTLPEKLIHSPNGRFVAVLGDSEYVIYTALAWRNKSFGEASAFVWGPdSNSYAVIQRG-KILYYKN 422
                    79***********************************************************************************965.57777** PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..............XXXXXXXX CS
  Coatomer_WDAD  97 fkekktksikleyqvdkifgGalLgvksegs........vsfYDweqgklvrridvkkvknVvwsddgelvalv..............skdtvyil 170
                    fk  ++ +    + + ++f+G lLgv  + s         +fY+we+g++v+ i+v++ ++V+wsd+gel+++v              ++ + y l
     CCD26657.1 423 FKLVQSVTYGGIF-AYELFAGPLLGVIGTRSglmyeptgFYFYEWETGNFVATINVHP-SEVIWSDSGELLMIVeatgrenndskeppKEPKSYSL 516
                    *****55555554.999*******98544321112222279*****************.***************88888888877777799***** PP

                    XXXXX...................XXXXXXX.XXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX CS
  Coatomer_WDAD 171 synleavee......edeeegvedafevlhelsesiksgaWvgdvfiYttsnnrlkylvngevgiikhldktlyilgykgkenklylldkdgnvvs 260
                     +n+e +e        d eegv dafev+ el+e+i sg+WvgdvfiYtts+nrl+y+v+g++++++h+ k++y+lgy +++n++yl+d++++++s
     CCD26657.1 517 MFNKEIYETalqnntVDAEEGVVDAFEVIDELDENIISGKWVGDVFIYTTSSNRLNYFVGGKTYNLNHYTKEMYLLGYMARDNSVYLADREIHIYS 612
                    *****88889****99******************************************************************************** PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX........XXXXXXXXXXXXXXXX-GGGSS-HHHHHHHHHHTT-HHHHHHHHHHH--HHHHHHH CS
  Coatomer_WDAD 261 leidlselefktavlrkdleevlkiiaasnllpeip.keegqkiirfLekkgypelAlqlvqDpetkFdLAlelgnLelAlelakelddeekWkkL 355
                     +++l++lef+t+ lr++lee     a  ++lp+++ k+++ k++rfLe++++ e Alq++ D+++kFdLAl+lg+L+lA++l+++ d+e kW++L
     CCD26657.1 613 HKVSLEVLEFQTLALRGELEE-----AMTSVLPNLKdKDSLVKLARFLENQEHYEEALQVSPDSDQKFDLALKLGDLTLAHDLLTTDDNELKWRSL 703
                    *********************.....8899999**99*********************************************************** PP

                    HHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT CS
  Coatomer_WDAD 356 gdaAlsqgniklaeeayqkakdfdkLllLylstgnkekLkkLakiaekkgdyniafqaalllgdvekcvdlLiksgrlpeAalfAktyg 444
                    gd+ ls++n+kla e+y++a+d+++L+lLy+s++nk++L+kLa++ae++g+yn+af++++++gd+e+  +lLik++rl+eAa+f+ tyg
     CCD26657.1 704 GDLGLSKFNFKLAIESYTNAHDLESLFLLYSSFNNKNELSKLAQEAENEGKYNLAFNCYWVSGDIESIKNLLIKTERLSEAAIFSHTYG 792
                    ****************************************************************************************9 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1     3e-05     0.089       9      38 .]      12      43 ..       4      43 .. 0.87
   2 !    6.1   0.0    0.0074        22      21      38 .]      68      85 ..      48      85 .. 0.84
   3 !   26.8   0.0   2.2e-09   6.5e-06       2      38 .]      90     127 ..      89     127 .. 0.91
   4 !   24.9   0.1   8.6e-09   2.6e-05       2      38 .]     133     171 ..     132     171 .. 0.87
   5 !   22.0   0.0   7.1e-08   0.00021       8      38 .]     183     216 ..     175     216 .. 0.85
   6 !   14.9   0.1   1.2e-05     0.037       2      38 .]     221     258 ..     220     258 .. 0.88
   7 ?   -1.5   0.0       1.9   5.7e+03      14      32 ..     276     295 ..     274     299 .. 0.75
   8 ?   -3.0   0.0       5.5   1.6e+04      18      26 ..     366     374 ..     357     379 .. 0.80

  Alignments for each domain:
  == domain 1  score: 13.7 bits;  conditional E-value: 3e-05
                SS.SS.EEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40  9 GH.ss.vtslafspdgawlasGsdDgtvriWd 38
                +H s+ v +++f+p  +w+++  + g++ iW+
  CCD26657.1 12 THkSDrVKGIDFHPTEPWVLTTLYSGKIEIWN 43
                596558**************9977*******8 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.0074
                TSSEEEEEETTSEEEEEE CS
        WD40 21 dgawlasGsdDgtvriWd 38
                 ++w++ G+dD  +r+++
  CCD26657.1 68 RKNWVIVGCDDFRIRVYN 85
                579**9**********97 PP

  == domain 3  score: 26.8 bits;  conditional E-value: 2.2e-09
                 EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 +++  +++H + ++s+a++p +++++s+sdD t+++W+
  CCD26657.1  90 EKIADFEAHpDYIRSIAVHPTKPYILSASDDMTIKLWN 127
                 5677899**777*************************8 PP

  == domain 4  score: 24.9 bits;  conditional E-value: 8.6e-09
                 EEEEEEESS.SSEEEEEEETTSSE.EEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtslafspdgaw.lasGsdDgtvriWd 38 
                 ++++t+ GH  +v ++af+p  +  +as++ D+tv++W+
  CCD26657.1 133 DLQQTFQGHeHFVMCVAFNPKDPTtFASACLDRTVKVWS 171
                 7899*****666*****99999997888899*******5 PP

  == domain 5  score: 22.0 bits;  conditional E-value: 7.1e-08
                 ESS.SSEEEEE..EETTSSEEEEEETTSEEEEEE CS
        WD40   8 tGH.ssvtsla..fspdgawlasGsdDgtvriWd 38 
                 tG+ ++v+ ++    pd+++l+++sdD+tv+iWd
  CCD26657.1 183 TGQeKGVNYVDyyPLPDKPYLVTASDDHTVKIWD 216
                 577778888888899******************9 PP

  == domain 6  score: 14.9 bits;  conditional E-value: 1.2e-05
                 EEEEEEESS.SSEEEEE.EETTSSEEEEEETTSEEEEEE CS
        WD40   2 qclrtltGH.ssvtsla.fspdgawlasGsdDgtvriWd 38 
                 +c+ tl+ H  +v s+a f+p+ + ++sGs+Dg v  W+
  CCD26657.1 221 SCVATLSKHtANV-SFAiFHPSLPVIVSGSEDGQVIAWN 258
                 699******777*.5555*****************9997 PP

  == domain 7  score: -1.5 bits;  conditional E-value: 1.9
                 EEEEEETTSSE..EEEEETTS CS
        WD40  14 tslafspdgaw..lasGsdDg 32 
                 +++a++p g+   +a G  D+
  CCD26657.1 276 WCVATHPTGKKnyIAVGF-DN 295
                 699988888877788887.65 PP

  == domain 8  score: -3.0 bits;  conditional E-value: 5.5
                 EETTSSEEE CS
        WD40  18 fspdgawla 26 
                  sp+g+++a
  CCD26657.1 366 HSPNGRFVA 374
                 799**9986 PP

>> Nup160  Nucleoporin Nup120/160
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.23   6.9e+02     238     259 ..      35      56 ..      26      91 .. 0.79
   2 ?   -0.8   0.0      0.15   4.4e+02     228     248 ..     108     129 ..      85     137 .. 0.80
   3 !    4.2   0.0    0.0046        14     229     249 ..     154     174 ..     142     201 .. 0.78
   4 !   16.9   0.1   6.6e-07     0.002     229     255 ..     199     225 ..     189     236 .. 0.87

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.23
                 TT-EEEEEETTTTEEEEEEE-- CS
      Nup160 238 rdgkLrvWnlltgkclatidll 259
                   gk+ +Wn++t + +++i+ +
  CCD26657.1  35 YSGKIEIWNYETETEVRSIQVT 56 
                 5688899999999999999887 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.15
                 ..TTTEEEEEETT-EEEEEETT CS
      Nup160 228 i.gqtylfalsrdgkLrvWnll 248
                   ++ y++++s d ++++Wn +
  CCD26657.1 108 HpTKPYILSASDDMTIKLWNWE 129
                 24889**************976 PP

  == domain 3  score: 4.2 bits;  conditional E-value: 0.0046
                 TTTEEEEEETT-EEEEEETTT CS
      Nup160 229 gqtylfalsrdgkLrvWnllt 249
                 + t+ +++++d++++vW+l  
  CCD26657.1 154 DPTTFASACLDRTVKVWSLGQ 174
                 6678899**********9954 PP

  == domain 4  score: 16.9 bits;  conditional E-value: 6.6e-07
                 TTTEEEEEETT-EEEEEETTTTEEEEE CS
      Nup160 229 gqtylfalsrdgkLrvWnlltgkclat 255
                 ++ yl+++s d+++++W+++t++c+at
  CCD26657.1 199 DKPYLVTASDDHTVKIWDYQTKSCVAT 225
                 6789**********************9 PP

>> BBS2_Mid  Ciliary BBSome complex subunit 2, middle region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.19   5.7e+02      64      88 ..      34      58 ..      32      67 .. 0.86
   2 !    5.6   0.0    0.0052        16      12      30 ..      69      87 ..      63     111 .. 0.80
   3 ?    1.5   0.0     0.098   2.9e+02      13      65 ..     112     170 ..     102     175 .. 0.75
   4 ?    2.0   0.0      0.07   2.1e+02      13      47 ..     201     237 ..     197     296 .. 0.70

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.19
    BBS2_Mid 64 vyekkerlWrvksknevvalaaydi 88
                +y++k ++W++ +++ev ++++ ++
  CCD26657.1 34 LYSGKIEIWNYETETEVRSIQVTET 58
                7999************999988765 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.0052
    BBS2_Mid 12 eneLvvgsddfeirvfkee 30
                +n ++vg ddf+irv++ +
  CCD26657.1 69 KNWVIVGCDDFRIRVYNYN 87
                6789***********9854 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.098
    BBS2_Mid  13 neLvvgsddfeirvfkee...elvaeitetekvvslarleker...fayaleNGtvgvy 65 
                  +++ +sdd++i++++ e   +l ++++ +e+ v+ ++ ++++   fa a    tv+v+
  CCD26657.1 112 PYILSASDDMTIKLWNWEkqwDLQQTFQGHEHFVMCVAFNPKDpttFASACLDRTVKVW 170
                 57899*********987644467788888888777777766655558877777777776 PP

  == domain 4  score: 2.0 bits;  conditional E-value: 0.07
    BBS2_Mid  13 neLvvgsddfeirv..fkeeelvaeitetekvvslar 47 
                  +Lv +sdd ++++  ++ ++ va+++++ + vs+a 
  CCD26657.1 201 PYLVTASDDHTVKIwdYQTKSCVATLSKHTANVSFAI 237
                 5788888888888733445566777766666666654 PP

>> MIT  MIT (microtubule interacting and transport) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.046   1.4e+02       7      26 ..     648     667 ..     647     686 .. 0.79
   2 ?    0.8   0.0      0.18   5.3e+02      19      33 ..     712     726 ..     709     739 .. 0.87
   3 !   10.0   0.1   0.00023      0.69       6      27 ..     741     762 ..     740     768 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.046
         MIT   7 lvkkAveeDnagnyeeAlel 26 
                 lvk A  ++n+++yeeAl+ 
  CCD26657.1 648 LVKLARFLENQEHYEEALQV 667
                 78889899*********986 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.18
         MIT  19 nyeeAlelYkealel 33 
                 n++ A+e Y++a +l
  CCD26657.1 712 NFKLAIESYTNAHDL 726
                 8999*******9876 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.00023
         MIT   6 elvkkAveeDnagnyeeAlelY 27 
                 el k A e++n+g+y  A+++Y
  CCD26657.1 741 ELSKLAQEAENEGKYNLAFNCY 762
                 78999***************** PP

>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.013        40      22      33 ..     659     670 ..     658     671 .. 0.91
   2 ?    2.3   0.0     0.054   1.6e+02      16      30 ..     712     726 ..     708     728 .. 0.87
   3 ?    1.2   0.7      0.12   3.7e+02       5      24 ..     743     762 ..     740     763 .. 0.88

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.013
                 HHHHHHHHHSTT CS
       TPR_1  22 eyyekALelnPn 33 
                 e+ye+AL++ P+
  CCD26657.1 659 EHYEEALQVSPD 670
                 89********98 PP

  == domain 2  score: 2.3 bits;  conditional E-value: 0.054
                 -HHHHHHHHHHHHHH CS
       TPR_1  16 kydeAleyyekALel 30 
                 +++ A+e y  A  l
  CCD26657.1 712 NFKLAIESYTNAHDL 726
                 899*********887 PP

  == domain 3  score: 1.2 bits;  conditional E-value: 0.12
                 HHHHHHHHHTT-HHHHHHHH CS
       TPR_1   5 ynlGnayfklgkydeAleyy 24 
                   l++   + gky+ A  +y
  CCD26657.1 743 SKLAQEAENEGKYNLAFNCY 762
                 67999999*********999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       929  (0.0518155); expected 358.6 (0.02)
Passed bias filter:                      486  (0.0271069); expected 358.6 (0.02)
Passed Vit filter:                        48  (0.00267723); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.74u 0.27s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 6167.18
//
Query:       CCD26658.1  [L=418]
Description: hypothetical protein NDAI_0I00890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
       0.13   12.3   1.5       0.84    9.7   0.0    2.6  2  DUF1639   Protein of unknown function (DUF1639)
        2.5    8.8  11.3         16    6.2   6.8    3.1  3  MSP7_C    MSP7-like protein C-terminal domain


Domain annotation for each model (and alignments):
>> DUF1639  Protein of unknown function (DUF1639)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   9.4e-05      0.84      24      43 ..     143     162 ..     128     165 .. 0.86
   2 ?   -0.7   1.3      0.16   1.5e+03       8      31 ..     349     372 ..     348     377 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 9.4e-05
     DUF1639  24 KRpknVqkqldslfPGlwLs 43 
                 +R+k V+++  + fPG+w  
  CCD26658.1 143 RRKKYVRREFSLFFPGSWVG 162
                 79****************85 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.16
     DUF1639   8 eDflamtGkkpprRPKKRpknVqk 31 
                 eD + m+Gk    +PK R ++ +k
  CCD26658.1 349 EDDIDMKGKITVIKPKFRRRLFKK 372
                 677899***9999***99997665 PP

>> MSP7_C  MSP7-like protein C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   1.3      0.07   6.3e+02      52      90 ..     253     293 ..     232     296 .. 0.64
   2 ?    6.2   6.8    0.0018        16       4      76 ..     255     346 ..     252     357 .. 0.81
   3 ?    3.3   0.1     0.014   1.2e+02      24      48 ..     392     416 ..     380     418 .] 0.83

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.07
      MSP7_C  52 kLidaffkk.eenenskadslveifkkaLkdk..kfreefkn 90 
                 +++++ff++ ++n+n +++++++  +k +++k  ++ ++f+n
  CCD26658.1 253 EILNSFFQNvTKNTN-QSKTITKWERKGINEKliEYWKYFNN 293
                 566777777433333.34566666666666654445555554 PP

  == domain 2  score: 6.2 bits;  conditional E-value: 0.0018
      MSP7_C   4 lddlydevlknenkkneietsey...................eskynnfkkeydnfvlnekEyeiikkLidaffkk.eenenskadslveifk 76 
                 l++++++v kn+n+++ i++ e                    e  yn+++ e + + l  ++y i++k++d  ++k    ++  + ++ ++f 
  CCD26658.1 255 LNSFFQNVTKNTNQSKTITKWERkgineklieywkyfnniefEPWYNEIDVEEN-YDLTLQDYSILRKIMDKAINKfASITSLPQMAMKKVFS 346
                 678899999999999999988888999999999999999998999999888766.99*******************55555555556666664 PP

  == domain 3  score: 3.3 bits;  conditional E-value: 0.014
      MSP7_C  24 seyeskynnfkkeydnfvlnekEye 48 
                 + + +k+++++ke dn+++ ++ ye
  CCD26658.1 392 HGNIDKFKDIQKEWDNVNITKERYE 416
                 56679***************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       956  (0.0533214); expected 358.6 (0.02)
Passed bias filter:                      506  (0.0282224); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3216.80
//
Query:       CCD26659.1  [L=859]
Description: hypothetical protein NDAI_0I00900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   6.9e-154  512.7  38.6   6.9e-154  512.7  38.6    1.6  2  TRP              Transient receptor potential (TRP) ion chann
    9.1e-41  139.5   0.9    1.5e-40  138.8   0.9    1.4  1  TRP_N            ML-like domain
  ------ inclusion threshold ------
       0.01   16.3   0.1       0.02   15.3   0.1    1.4  1  E1_DerP2_DerF2   ML domain
      0.044   13.8   0.1      0.044   13.8   0.1    2.5  3  TMEMspv1-c74-12  Plectrovirus spv1-c74 ORF 12 transmembrane p


Domain annotation for each model (and alignments):
>> TRP  Transient receptor potential (TRP) ion channel
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  512.7  38.6  1.5e-157  6.9e-154       1     425 [.     178     609 ..     178     610 .. 0.97
   2 ?   -2.5   0.0      0.36   1.6e+03      73     115 ..     631     686 ..     629     727 .. 0.61

  Alignments for each domain:
  == domain 1  score: 512.7 bits;  conditional E-value: 1.5e-157
         TRP   1 vkwvtaviaglallasnasavastlgnsnaaahvaasvlslflyfQsvafigmlsv.nyPpvlaawtqnfaWsmglirvsfmqkiinwyvqstgGtatl 98 
                 vkw+tav+ag++ll+   sa++st+gns aa+h++a+++slflyfQsv++i+m++v ++Pp++aaw +n+ Wsmgli+++fmq+i++wyv+stgGt+ l
  CCD26659.1 178 VKWATAVVAGIGLLL---SATLSTFGNSIAASHISANTMSLFLYFQSVVVIAMVHVhRVPPIAAAWSENLVWSMGLIKINFMQRIFRWYVESTGGTPDL 273
                 8**************...********************************************************************************* PP

         TRP  99 vlsssstssvsvkral.........krgeskslpessskl.v.rGikrvaekagiestnafmtgllffliliallvvlvllfKlllellarkklike.d 185
                 +l+  +t+sv ++r++         kr++  ++   ++++ + rGikr+a+ +gie+t++++tg++ff++++++l+ +++++K+ +el +r+++ik  +
  CCD26659.1 274 YLTA-TTMSVLTQRSIeylkswplfKRAD--NVLYGNQNTlIfRGIKRLAYSMGIENTSIVCTGFTFFVLCGYVLAGFIIVCKYSIELGIRVGWIKDrN 369
                 ****.99******9999999888776533..4444555666779****************************************************77* PP

         TRP 186 rlkefrknwlgilkgallrlilifffqllvlclfeftqrdsaavvvlAvillalflgvllffafrvlitarkskrlhknpaylLysdkkvlnkyGflye 284
                 +++efr+nw+ +lkg llr+++i+f+ql++l+++eft+rdsaav+v+A+++++l +g++l++a+r++++a+ks+++++npa+lLy+d+ vl+kyGf+y+
  CCD26659.1 370 KFSEFRSNWRLVLKGSLLRYVYIGFVQLTILSFWEFTERDSAAVIVIACLFIILSVGLMLWAAYRTVYFAKKSIQMYNNPAALLYGDQYVLHKYGFFYT 468
                 *************************************************************************************************** PP

         TRP 285 qyrasrywffvpllvylfvkalfialaqgsGkvQvialliiEllylvlliwlrPyedkrtnvlniiisvvkvlnvilllaFseefglseivktvvGvvl 383
                 +++a++yw+ ++ll+y+fvk+lfi++ q+sG++Q++++++++l+y+v++i+++Py dk tn++ni+i++v+v+n++l+l+Fs+ fg+s  v++++G+++
  CCD26659.1 469 MFNANHYWWNIVLLSYVFVKSLFIGFSQASGMTQALVIWLLDLFYFVAIIYYQPYLDKPTNIMNILIATVTVVNSFLFLFFSDLFGQSYKVSAIMGWIF 567
                 *************************************************************************************************** PP

         TRP 384 ivinavlalvlliliivnaiiallsknpdrryrpakddresf 425
                 +++na+++++ll++i++ + ++++sknpd r++pakddr+sf
  CCD26659.1 568 FIMNAAFSFILLMMILLFTGLTVFSKNPDIRFKPAKDDRTSF 609
                 ****************************************98 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.36
         TRP  73 mglirvsfmqkiinwyvqstgG....tatlvlsssstssvsvk....ral.....k 115
                 +g++ +++ q+  n  +qs+ G       l++++++  s s +    r+      +
  CCD26659.1 631 LGVVANDHGQNWENELIQSNNGttlgGKDLMFDEEKLDSPSSNsrfnRSSstpenN 686
                 57788888899999999999997776666777777777777753233444333221 PP

>> TRP_N  ML-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.8   0.9   3.4e-44   1.5e-40       2     139 .]      39     173 ..      38     173 .. 0.97

  Alignments for each domain:
  == domain 1  score: 138.8 bits;  conditional E-value: 3.4e-44
       TRP_N   2 vtssfenClensqftaskfdvtftpdnktvvfnvtgtssienkavtlelkveaygyevvnetvdpCdanvkglCPlgpgfkinasgvlkvseevvseip 100
                 +++s+ +C+ensq++a++fdv f+pd++++++ +++t++i+++ +t++++v+ayg+++++++vd+C++++k++CP++pg  i+++++ ++s+e+v+eip
  CCD26659.1  39 TATSLVTCMENSQLSANNFDVIFNPDDRSLHYTLDMTTQIDSY-ITADIDVYAYGFKIITKNVDLCNIDWKQFCPVHPG-IIEIDSIEYISKEYVDEIP 135
                 6789**************************************9.***********************************.******************* PP

       TRP_N 101 siaYsipdldatvrvriystgeateiaCvsatitngktv 139
                 +iaY++pd+da++++++y +++++ +aC++  ++ngktv
  CCD26659.1 136 GIAYTVPDIDAYAKIKVY-NNHSEYLACIQIFFSNGKTV 173
                 ******************.55889**************7 PP

>> E1_DerP2_DerF2  ML domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.3   0.1   4.4e-06      0.02      32     131 ..      64     166 ..      44     168 .. 0.79

  Alignments for each domain:
  == domain 1  score: 15.3 bits;  conditional E-value: 4.4e-06
                     SEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEE-BSSEETCHHHHHHTTTT-SSSB-TCEEEEEEEEEE............S-CCCHSCEEEEE CS
  E1_DerP2_DerF2  32 qnltisadgstsdeissglkaevevkvggwikvpfelpetddaCkvlelgegleCPikageyvtytlslp............lpselpngkyrve 114
                     ++ +++ + + +++i s ++a+++v + g +k++ +     d+C+      +  CP+ +g   +   s++            +  ++p+++   +
      CCD26659.1  64 DDRSLHYTLDMTTQIDSYITADIDVYAYG-FKIITK---NVDLCNID---WKQFCPVHPGII-E-IDSIEyiskeyvdeipgIAYTVPDIDAYAK 149
                     55566666777888888899999999999.999999...55****53...4457******66.3.2233344668899988888899999***** PP

                     EEEEECTTEEEEEEEEE CS
  E1_DerP2_DerF2 115 lelldedgkeltCvkid 131
                     +++++++++ l+C++i 
      CCD26659.1 150 IKVYNNHSEYLACIQIF 166
                     **************986 PP

>> TMEMspv1-c74-12  Plectrovirus spv1-c74 ORF 12 transmembrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4       1.1   4.7e+03      11      32 ..     415     436 ..     412     443 .. 0.63
   2 ?   -4.7   1.9         4   1.8e+04      11      27 ..     505     521 ..     504     522 .. 0.75
   3 ?   13.8   0.1   9.8e-06     0.044       8      37 ..     573     604 ..     566     615 .. 0.83

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.1
  TMEMspv1-c74-12  11 vvivLgiFlyiGLsiyqKikqi 32 
                      v+  L i l +GL ++   + +
       CCD26659.1 415 VIACLFIILSVGLMLWAAYRTV 436
                      3445667777888877666655 PP

  == domain 2  score: -4.7 bits;  conditional E-value: 4
  TMEMspv1-c74-12  11 vvivLgiFlyiGLsiyq 27 
                      v+ +L +F ++ +  yq
       CCD26659.1 505 VIWLLDLFYFVAIIYYQ 521
                      66688888888877777 PP

  == domain 3  score: 13.8 bits;  conditional E-value: 9.8e-06
  TMEMspv1-c74-12   8 iFSvvivLgiFlyiGLsiyqKikqirgk..kk 37 
                       FS ++++ i l+ GL+++ K+  ir k  k 
       CCD26659.1 573 AFSFILLMMILLFTGLTVFSKNPDIRFKpaKD 604
                      6************************9874334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1322  (0.0737353); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.25s 00:00:00.92 Elapsed: 00:00:00.39
# Mc/sec: 6551.68
//
Query:       CCD26660.1  [L=908]
Description: hypothetical protein NDAI_0I00910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.9e-23   82.0   3.4    7.8e-23   80.6   3.4    1.8  1  GCR1_C    Transcriptional activator of glycolytic enzymes
  ------ inclusion threshold ------
       0.27    9.5  33.9       0.77    8.0  33.9    1.8  1  CDC45     CDC45-like protein


Domain annotation for each model (and alignments):
>> GCR1_C  Transcriptional activator of glycolytic enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   3.4   8.7e-27   7.8e-23       1      80 []     807     884 ..     807     884 .. 0.98

  Alignments for each domain:
  == domain 1  score: 80.6 bits;  conditional E-value: 8.7e-27
      GCR1_C   1 fklsreiktVedlwnEykeglngkpsikslekkygkrWrkdskesklfsrRkkiidfierlieeegitreeavkileelR 80 
                 ++l +++++V+ +w+Ey +g+ng+psi++le++yg++Wr +++ +k+fsrRk++++fi +++++ g+t ee+++ilee R
  CCD26660.1 807 YTLIKAPNNVRTIWEEYLYGINGNPSIRYLEERYGNKWRMTRN-KKTFSRRKRLYKFIMKGMDK-GKTAEEMINILEERR 884
                 8999**************************************9.********************.************987 PP

>> CDC45  CDC45-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  33.9   8.6e-05      0.77     108     206 ..     650     751 ..     612     787 .. 0.41

  Alignments for each domain:
  == domain 1  score: 8.0 bits;  conditional E-value: 8.6e-05
       CDC45 108 DDgdieeeleeereayealeeeeesdeedeeeeeeddddeeeeeeeeedeedeeedeeeskkkrk...sksdeeee..sddddersrkrrrsepsakkl 201
                 DDg  e++ eee+e+++ +++e+e+++++e+e++ dd+de+e++++ee+ee+eeedeee++ +      +s++e++  s  +++++++rrr ++++k++
  CCD26660.1 650 DDGYQEDDDEEEEEDVNGVNDEDENESDNESEDDLDDEDEDEDDDDEEEEEEEEEDEEEEEDEIDedvVDSRREHQtlS--NANSNANRRRVKRKNKTV 746
                 4444444444444444444444444333222222122211111111111111111111111111111111111111121..222222222222222222 PP

       CDC45 202 rrqlk 206
                 r+ + 
  CCD26660.1 747 RNLSS 751
                 22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2588  (0.144347); expected 358.6 (0.02)
Passed bias filter:                      356  (0.0198561); expected 358.6 (0.02)
Passed Vit filter:                       141  (0.00786435); expected 17.9 (0.001)
Passed Fwd filter:                        45  (0.0025099); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.42u 0.31s 00:00:01.73 Elapsed: 00:00:00.50
# Mc/sec: 5454.26
//
Query:       CCD26661.1  [L=425]
Description: hypothetical protein NDAI_0I00920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
  ------ inclusion threshold ------
          1    8.0   3.6        2.1    7.0   3.6    1.4  1  CENP-I    Mis6


Domain annotation for each model (and alignments):
>> CENP-I  Mis6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   3.6   0.00011       2.1      33      92 ..      16      73 ..       4      82 .. 0.83

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.00011
      CENP-I 33 ksvleeksseedsesaddqkkdseedslkkalryfekvqkkvslkknevlekhlktvenv 92
                ++  ++++ +++s++++d+++ +++d + ka +y+  +q+kv + kn++ e+ ++t+e+ 
  CCD26661.1 16 NNNDNNNNGNDNSNNNNDNSNSNNDDFVTKAENYV--GQDKVDQFKNKIGEENFNTLESK 73
                33345677788999999*****************8..79******************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1313  (0.0732333); expected 358.6 (0.02)
Passed bias filter:                      235  (0.0131073); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.98u 0.33s 00:00:01.31 Elapsed: 00:00:00.52
# Mc/sec: 2436.20
//
Query:       CCD26662.1  [L=1565]
Description: hypothetical protein NDAI_0I00930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.4e-18   66.6   0.1    1.2e-17   64.3   0.1    2.3  1  ARID        ARID/BRIGHT DNA binding domain
    1.2e-15   58.0   3.6    2.5e-07   31.1   0.1    3.5  3  JmjC        JmjC domain, hydroxylase
    1.1e-06   28.4   6.0    2.2e-06   27.5   6.0    1.5  1  PHD         PHD-finger
  ------ inclusion threshold ------
      0.021   15.1   5.3      0.062   13.6   5.3    1.8  1  zf-HC5HC2H  PHD-like zinc-binding domain
      0.053   13.5   0.0       0.15   12.0   0.0    1.8  1  JmjN        jmjN domain
       0.31   11.0   3.8       0.79    9.7   3.8    1.6  1  C1_1        Phorbol esters/diacylglycerol binding domain (C1 
        1.3    9.2   5.5        3.6    7.7   5.5    1.8  1  PHD_4       PHD-finger
        4.3    6.8   9.0         11    5.5   9.0    1.6  1  GKAP        Guanylate-kinase-associated protein (GKAP) protei


Domain annotation for each model (and alignments):
>> ARID  ARID/BRIGHT DNA binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.1   5.6e-21   1.2e-17       3      90 .]     279     380 ..     278     380 .. 0.91

  Alignments for each domain:
  == domain 1  score: 64.3 bits;  conditional E-value: 5.6e-21
                 HHHHHHHHHHHH..................HTTSSSS----SSSS-STTHHHHHHTTTSSHHHHTT.CHHHHHHHHHTS-..-.......HHHHHHHHH CS
        ARID   3 eeFlstLkqfhe..................nrgtlkkiPviggkevdlykLyraVikrGGfrkvtqknkWeevaqklglpredpeasesvaqalksiYe 83 
                  eF+s+L +fh+                  n+g+l kiP i+++ +dly+++++V+ rGGf++v+q++ W+++ ++lg++ +   +s s++++l+++Y+
  CCD26662.1 279 LEFYSKLFKFHKqkymesasstinnnnknyNNGSL-KIPSIDKRVLDLYHFWNCVQLRGGFDAVCQRKFWAQIGRELGYSGK--IMS-SLSTSLRAAYV 373
                 58*********************988776666665.8******************************************854..365.9********** PP

                 HHHHHHH CS
        ARID  84 ryLlpyE 90 
                 ++Ll++E
  CCD26662.1 374 KVLLDFE 380
                 ******9 PP

>> JmjC  JmjC domain, hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.1   1.1e-10   2.5e-07       4      55 ..     612     664 ..     610     720 .. 0.84
   2 !   26.0   0.1   4.3e-09   9.7e-06      65     109 ..     727     771 ..     708     776 .. 0.87
   3 ?   -3.4   0.1       5.6   1.2e+04      17      52 ..    1286    1320 ..    1282    1327 .. 0.55

  Alignments for each domain:
  == domain 1  score: 31.1 bits;  conditional E-value: 1.1e-10
                 EE-TT-EEEEE--GGG-EEEEEEEEES-EEEEEE-GGGHHHHHHHHHHH..HHC CS
        JmjC   4 lgmpksttpwhiedqglySinylhfgapkvWyiipeekkeklekvlskk..nsk 55 
                 +gm +s+ +w + d  l Si y+h+g++k Wyiip +  ek++++++    n +
  CCD26662.1 612 VGMFFSIAGWSTNDLFLPSIDYNHLGSSKLWYIIPHHSMEKFQSLINNLaqN-D 664
                 79*****************************************998888421.2 PP

  == domain 2  score: 26.0 bits;  conditional E-value: 4.3e-09
                 TCEE-HHHHHHTT---EEEEE-TT-EEEE-TT-EEEEEESSSEEE CS
        JmjC  65 stlispkqlekegipvyrfvqkpgefVfvfpgayHsvfnlgfnia 109
                 + +++p+ l+ + i+v+++ q+ + +Vf+fpg+yHs++  g  ++
  CCD26662.1 727 NYQFTPDFLRANDIEVHTISQEYDSYVFIFPGTYHSTVGAGVYLS 771
                 67899*******************************998776665 PP

  == domain 3  score: -3.4 bits;  conditional E-value: 5.6
                  GGG-EEEEEEEEES-EEEEEE-GGGHHHHH..HHHHHH CS
        JmjC   17 dqglySinylhfgapkvWyiipeekkekle..kvlskk 52  
                  +qgl+   ++ f+++k+W+   ++k +++e  k+++k 
  CCD26662.1 1286 NQGLL---NKQFKESKYWLNQLYKKVKRVEfdKFTKKA 1320
                  44444...567777777765544444444433555554 PP

>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   6.0   9.8e-10   2.2e-06       1      51 [.    1344    1392 ..    1344    1393 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.5 bits;  conditional E-value: 9.8e-10
                  SBTTTTSTTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSS.TBSSTTTHT CS
         PHD    1 rCavCkkksdeeeelvqCdgCkrwfHqkClkppleseekpeg.ewlCekCke 51  
                  +C +C++   + +++vqC+ C++w+H++C++    + +++++  +lC+ C++
  CCD26662.1 1344 YC-FCRG--GDIGTMVQCEICQEWYHTACINNGNWTLPEDNDtVFLCSLCNN 1392
                  69.****..789******************99887655555579******86 PP

>> zf-HC5HC2H  PHD-like zinc-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   5.3   2.8e-05     0.062      33      88 ..    1338    1392 ..    1316    1394 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 2.8e-05
  zf-HC5HC2H   33 erkklkCylCk.kkvGaciqCskkkCkkafHvtCakeagllleeeeekeklksyCkk 88  
                  ++++++ ++C+   +G ++qC+   C++ +H+ C  + + +l e+++++ l+s+C++
  CCD26662.1 1338 ANNQTRYCFCRgGDIGTMVQCEI--CQEWYHTACINNGNWTLPEDNDTVFLCSLCNN 1392
                  445555567773559*******9..********************999999999985 PP

>> JmjN  jmjN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.7e-05      0.15      12      31 ..     199     218 ..     194     220 .. 0.93

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 6.7e-05
                 -HHHHHHHHHHHHCCCSEEE CS
        JmjN  12 dplkYiekieplgekyGIcK 31 
                 +p+k+ e++++lg+kyG +K
  CCD26662.1 199 NPIKFYESVKDLGAKYGAVK 218
                 8******************9 PP

>> C1_1  Phorbol esters/diacylglycerol binding domain (C1 domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   3.8   0.00035      0.79      20      45 ..    1346    1372 ..    1333    1377 .. 0.80

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00035
                  B--S.SSS-EEEETTT--EE-CCCCTT CS
        C1_1   20 flwg.kekqglkCswCkllvHkkChek 45  
                  f++g    ++++C+ C++ +H  C+++
  CCD26662.1 1346 FCRGgDIGTMVQCEICQEWYHTACINN 1372
                  346667789***************986 PP

>> PHD_4  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.5    0.0016       3.6      29      67 ..    1354    1390 ..    1339    1391 .. 0.87

  Alignments for each domain:
  == domain 1  score: 7.7 bits;  conditional E-value: 0.0016
       PHD_4   29 slmeCsvCyeivHpeClkekegegvvnedlpnsWeCpkC 67  
                  ++++C++C e  H +C+++  g+ ++ ed  +   C+ C
  CCD26662.1 1354 TMVQCEICQEWYHTACINN--GNWTLPEDNDTVFLCSLC 1390
                  6789*************88..667888888888888877 PP

>> GKAP  Guanylate-kinase-associated protein (GKAP) protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   9.0    0.0048        11      64     149 ..      34     128 ..      13     138 .. 0.60

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.0048
        GKAP  64 edle.........glslevateekalqfgasvqrhssepestsqvsitrtvnkqgslaykedldsaldpsslppPdpwlessnesssssleesgr 149
                 +  +         +  +e++t +++++++ s++  ++  ++ts+ + t t+++ ++   + +   +l+pss+p P+p    +n+++ +s++ s++
  CCD26662.1  34 KSNIssastspdlTARIESTTPDTTIRTNISTSLPTNSTTTTSTTTSTTTTTTTNNNNTDSNAMEQLEPSSIPLPKPANGKKNSKNADSATSSSS 128
                 33332222222222334666666666666666666556666666777778888888888899999**********99987555554444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1565 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1665  (0.0928663); expected 358.6 (0.02)
Passed bias filter:                      463  (0.0258241); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.99u 0.29s 00:00:01.28 Elapsed: 00:00:00.48
# Mc/sec: 9865.46
//
Query:       CCD26663.1  [L=509]
Description: hypothetical protein NDAI_0I00940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.5e-44  150.9  13.5    5.3e-44  150.4  13.5    1.3  1  Cation_efflux  Cation efflux family


Domain annotation for each model (and alignments):
>> Cation_efflux  Cation efflux family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.4  13.5   2.9e-48   5.3e-44       2     198 ..     150     365 ..     149     366 .. 0.97

  Alignments for each domain:
  == domain 1  score: 150.4 bits;  conditional E-value: 2.9e-48
  Cation_efflux   2 ilsllanlilalvelivglltnSlalladafhslsdlvsllllllalklsrkppderfpfGygrlevlgalvsgllllglavfllleaiqkli... 94 
                    +++l++n+++a+ ++i+gl+++S+al+ada+h++sd++ +ll+l++++l+  +p+ ++p+Gyg++e++g+l+++++l+++++++ ++++  ++   
     CCD26663.1 150 WIGLAVNVGIAVGKVIGGLVFHSQALFADAIHAVSDIICDLLTLFSVRLAASKPTPDYPYGYGKIETIGSLTVSSILVMAGISIGWTSLCAIVgpi 245
                    799***********************************************9999****************************************** PP

  Cation_efflux  95 ...................kegereihaglalvvalvslvvnlalllilrragrklrsaalkaaalhvlgDaltslgvlvsalvillfnlksgpla 171
                                       ++  +e+  + a++va++s++ + ++++++r+++ +++s +l a+a+h+++D+ltsl++lv++   +lf  +s   +
     CCD26663.1 246 iphtiiemlstvglgsshsESVLEEMTDINAAWVAAASIAAKEWVFRATRKVAIETNSNVLMANAWHHRVDSLTSLVALVTITSGYLFSIQS---L 338
                    ****************99888889999999**********************************************************9999...* PP

  Cation_efflux 172 DpvaslligliilysalkllkeslseL 198
                    D +++ll++++i++++ + +  s++eL
     CCD26663.1 339 DTLGGLLVSIFIIKAGAEGMYLSVKEL 365
                    ****************99888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       776  (0.0432818); expected 358.6 (0.02)
Passed bias filter:                      457  (0.0254894); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.26s 00:00:00.78 Elapsed: 00:00:00.41
# Mc/sec: 3769.53
//
Query:       CCD26664.1  [L=147]
Description: hypothetical protein NDAI_0I00950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    3.9e-20   72.2   2.8    1.2e-18   67.4   2.8    2.0  1  Polysacc_synt_4  Polysaccharide biosynthesis


Domain annotation for each model (and alignments):
>> Polysacc_synt_4  Polysaccharide biosynthesis
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   2.8   6.6e-23   1.2e-18       1     185 [.      17     139 ..      17     145 .. 0.96

  Alignments for each domain:
  == domain 1  score: 67.4 bits;  conditional E-value: 6.6e-23
  Polysacc_synt_4   1 aEislavkvlerrevpcnlLvFGlghesllwkslnkggrlvlleeddeivekvkkefpeleayevkYktkvsdadeLlsaakkeaecrpvqnll 94 
                      +E ++av ++e++e+++nl+           +++ +g++l+l++ ddei+e++ ++fpe++  e   +++  ++deL+++++k           
       CCD26664.1  17 IERQFAVVAVEQAETYWNLI-----------TKV-PGSKLRLTKFDDEIYETFIEHFPEYKDAE---RVRKFEEDELKTKEAK----------- 84 
                      5899****************...........9**.*************************9888...****************........... PP

  Polysacc_synt_4  95 asdckLalrdLPnevyeekWDvilvDaprgfaeeapgrmediytagvlaRarkseeyseetdvfvhdvqrkvekafseeFlceeiavnreg 185
                                       ekW        r+f++ +++++ed +++g+l+R++++eey ++t++fv ++q          F+c eia+n++ 
       CCD26664.1  85 -----------------EKW--------RKFCALFEKKIED-FNFGTLLRTDANEEYGQNTTCFVVRIQ----------FYCFEIARNKHK 139
                      .................9**........*************.***************************..........********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       899  (0.0501422); expected 358.6 (0.02)
Passed bias filter:                      460  (0.0256568); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.27s 00:00:00.70 Elapsed: 00:00:00.44
# Mc/sec: 1010.78
//
Query:       CCD26665.1  [L=1212]
Description: hypothetical protein NDAI_0I00960 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.1e-48  165.2   0.0    1.2e-25   90.6   0.0    4.2  3  ABC_tran         ABC transporter
    6.9e-13   48.5   0.0    0.00089   18.8   0.0    3.8  3  SMC_N            RecF/RecN/SMC N terminal domain
    1.9e-12   47.7   7.1      0.013   15.4   0.0    4.8  3  AAA_21           AAA domain, putative AbiEii toxin, Type IV T
    3.8e-11   42.7   1.3    1.1e-10   41.3   1.3    1.9  1  Chromo           Chromo (CHRromatin Organisation MOdifier) do
    2.8e-07   30.2   0.3      0.022   14.5   0.1    2.6  2  AAA_29           P-loop containing region of AAA domain
    6.9e-07   29.3   0.0      0.018   15.1   0.0    3.0  2  MMR_HSR1         50S ribosome-binding GTPase
    1.7e-06   28.0   0.1      0.018   14.9   0.0    2.5  2  RsgA_GTPase      RsgA GTPase
    2.2e-05   25.0   0.1     0.0095   16.5   0.0    3.7  3  AAA_23           AAA domain
    4.1e-05   23.9   0.0       0.67   10.2   0.0    3.2  2  AAA_22           AAA domain
    0.00015   22.2   0.1        4.7    7.6   0.0    4.1  4  AAA              ATPase family associated with various cellul
    0.00021   20.4   0.2       0.59    9.1   0.0    2.6  2  MeaB             Methylmalonyl Co-A mutase-associated GTPase 
    0.00024   21.4   0.1       0.42   10.8   0.0    3.1  3  AAA_28           AAA domain
    0.00033   20.8   4.8      0.041   14.0   0.1    4.4  4  DUF87            Helicase HerA, central domain
     0.0005   20.6   0.1       0.63   10.6   0.0    2.9  2  AAA_18           AAA domain
    0.00065   20.1   0.0        1.7    9.1   0.0    2.8  2  RNA_helicase     RNA helicase
    0.00069   20.0   0.1       0.19   12.1   0.0    3.1  2  AAA_16           AAA ATPase domain
     0.0019   17.9   0.5        3.5    7.3   0.0    3.5  2  AAA_30           AAA domain
     0.0022   17.6   0.0          1    8.9   0.0    2.6  2  AAA_27           AAA domain
      0.003   17.3   6.8       0.52   10.0   0.0    3.8  3  AAA_15           AAA ATPase domain
     0.0038   17.4   0.0        5.1    7.3   0.0    2.7  2  AAA_33           AAA domain
     0.0055   16.6   1.1        2.7    7.9   0.0    3.1  3  NACHT            NACHT domain
     0.0067   16.5   0.1       0.47   10.5   0.0    3.1  2  Dynamin_N        Dynamin family
  ------ inclusion threshold ------
      0.011   14.9   0.1        3.1    6.9   0.0    2.4  2  DUF815           Protein of unknown function (DUF815)
      0.013   15.5   0.1        5.6    7.0   0.0    3.3  3  AAA_14           AAA domain
      0.037   14.2   0.0         13    6.0   0.0    2.8  2  Roc              Ras of Complex, Roc, domain of DAPkinase
      0.042   13.6   0.0        2.1    8.1   0.0    2.7  2  AAA_24           AAA domain
       0.06   13.1   0.0        7.7    6.2   0.0    2.6  2  MukB             MukB N-terminal
      0.061   13.2   0.1        7.6    6.4   0.1    2.9  3  NTPase_1         NTPase
      0.069   12.4   0.1        8.5    5.6   0.0    2.7  2  Zeta_toxin       Zeta toxin
      0.096   12.7   0.3         13    5.8   0.1    2.6  2  TsaE             Threonylcarbamoyl adenosine biosynthesis pro
        0.1   12.2   0.2        1.2    8.8   0.0    2.6  2  Thymidylate_kin  Thymidylate kinase


Domain annotation for each model (and alignments):
>> ABC_tran  ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       4.9   2.8e+03      68     116 ..     232     302 ..     151     312 .. 0.50
   2 !   68.6   0.2   1.3e-21   7.3e-19       1     137 []     604     733 ..     604     733 .. 0.75
   3 !   90.6   0.0   2.1e-28   1.2e-25       1     137 []     846    1078 ..     846    1078 .. 0.77

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 4.9
                 --S-TTSBHHHH......................HHHTCHHHHHHHSTTGGTTCBGESTTSGGS-HHHHHH CS
                 xxxxxxxxxxxx......................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  68 pqlfpeltvren......................esdeeiekalsklglkelkdtvvksspssLSgGqkqr 116
                 +q+f +++ +e                       +++  ++++ls +  + l+  v+ s  s L  G k  
  CCD26665.1 232 AQFFTNKSPQEAhliplfqyaldamaekettvkrAAQHAVDALLSAFPAESLTSYVLPSILSYLASGAKWQ 302
                 33333333333344444444444444443333323333355555555555555555544445555555555 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 1.3e-21
                 EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--...SEEEEEETTCEGGGB-HHHCCHCEEEE-SS--S-TTSBHHHH...HHHTCHHHHHHHST CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxxxxxxxxxxxxx RF
    ABC_tran   1 lknvslklkegekvaivGenGaGKStLlkllagllkp...teGeilldgkdlkeqeleslrkeigvlpqepqlfpeltvren...esdeeiekalsklg 93 
                 l++ +l l +g+++++ G+nGaGKStL++++a+   +   ++++++          + +++++++  + +  l + + + e+   +s++ei++al+++g
  CCD26665.1 604 LNKTTLRLIKGHRYGLCGRNGAGKSTLMRAIANGQLDgfpDKDTLR----------TCFVEHKLQGEEGDLDLVSFIALDEElqsTSRDEIANALESVG 692
                 67889999***********************976543233444442..........3455555555555555555554444444456888999999999 PP

                 TGGTTCBGESTTSGGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran  94 lkelkdtvvksspssLSgGqkqrvalarallkkpkllllDEpta 137
                  +e  ++++ +   sLSgG+k +++lara+l+++++lllDEpt+
  CCD26665.1 693 FDE--ERRA-QTVGSLSGGWKMKLELARAMLQRADILLLDEPTN 733
                 887..4444.567******************************8 PP

  == domain 3  score: 90.6 bits;  conditional E-value: 2.1e-28
                  EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS--SEEEE.....................EETTCEGGG............B-HHHCCHCEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....................xxxxxxxxx............xxxxxxxxxxxxx RF
    ABC_tran    1 lknvslklkegekvaivGenGaGKStLlkllagllkpteGei.....................lldgkdlke............qeleslrkeigvl 64  
                  l++vs +l+ +++va++G+nGaGKStL+kll+g+l p+eG++                     +    + k+            +++e+l ke++ +
  CCD26665.1  846 LSHVSCSLSLSSRVAVLGPNGAGKSTLIKLLTGELVPQEGKVekhpnlrigyiaqhalehvnqH----KEKTanqylqwryqfgDDREVLLKESRKI 938 
                  6789**************************************6666666665555555433321....11112223444444455555555555555 PP

                  -SS--S-TTSBHHHH......................................................................HHHTC....... CS
                  xxxxxxxxxxxxxxx......................................................................xxxxx....... RF
    ABC_tran   65 pqepqlfpeltvren......................................................................esdee....... 84  
                  ++            +                                                                      e+++e       
  CCD26665.1  939 SE------------EekemmtklidvddgrgeraieaivgrqklkksfqyevkwkywkpkynswvprevlighgfeklvqkfddhEASREglgyrel 1023
                  55............055555555555678*******************************9999999999999999999888776333336666666 PP

                  .HHHHHHHSTTGGTTCBGESTTS.GGS-HHHHHHHHHHHHHHHTSSEEEEESTTT CS
                  .xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
    ABC_tran   85 .iekalsklglkelkdtvvkssp.ssLSgGqkqrvalarallkkpkllllDEpta 137 
                   ++ + +++++++l+ +++++ p  sLSgGq ++v++a a++++p ll+lDEpt+
  CCD26665.1 1024 vPSVISKHFEDVGLDSEIANHTPlGSLSGGQLVKVVIAGAMWNNPHLLVLDEPTN 1078
                  699999999999999999988889******************************8 PP

>> SMC_N  RecF/RecN/SMC N terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0025       1.5      22      44 ..     612     634 ..     599     638 .. 0.78
   2 !   18.8   0.0   1.5e-06   0.00089     117     203 ..     678     766 ..     665     779 .. 0.88
   3 !   16.3   0.0   8.6e-06     0.005      26     202 ..     858    1109 ..     845    1118 .. 0.81

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0025
                 TTSSEEEEEESTTSSHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  22 fsksftaivGpNGSGKsnlldAi 44 
                 ++ +   + G+NG+GKs l+ Ai
  CCD26665.1 612 IKGHRYGLCGRNGAGKSTLMRAI 634
                 555556789*************9 PP

  == domain 2  score: 18.8 bits;  conditional E-value: 1.5e-06
                 EE-HHHHHHHHHCTT-STT.......CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHCC CS
                 xxxxxxxxxxxxxxxxxxx.......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N 117 evtkkevsellesagiske.......lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreemle 203
                 + ++ e+++ les+g+++e       +LSgG k    + L +A  + ++a + llDe   +LD +nvk + ++l e++ +   +++s+++++l 
  CCD26665.1 678 STSRDEIANALESVGFDEErraqtvgSLSGGWK----MKLELARAMLQRADILLLDEPTNHLDVSNVKWLEDYLLEHT-DITSLIVSHDSGFLD 766
                 566799************99999999*****87....78899999********************************9.677788899888776 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 8.6e-06
                  EEEEEESTTSSHHHHHHHHHHHCTT.TTT.....TTTCHCCCCCC--......BTTCSSTTEEEEEEEEEETTEESSSSSSCEEEEEEEETTSEEEE CS
                  xxxxxxxxxxxxxxxxxxxxxxxxxxxxx.....xxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N   26 ftaivGpNGSGKsnlldAilFvLGersak.....klrseklsdlihk......skekasvkkaeveitfdnedkklkiekeevsisrrvkrkgesey 111 
                    a++GpNG+GKs l+  +   L  ++ k     +lr   +     +      +++k+++ + +++  ++  d++++  ke+ +is + k+  +  +
  CCD26665.1  858 RVAVLGPNGAGKSTLIKLLTGELVPQEGKvekhpNLRIGYIA----QhalehvNQHKEKTANQYLQWRYQFGDDREVLLKESRKISEEEKEMMTKLI 950 
                  4689*************9988887666541111134433322....224444566666667777888888878777777777777766666655555 PP

                  EETTEEE-HHHHHHHHHCTT-STT......................................................................... CS
                  xxxxxxxxxxxxxxxxxxxxxxxx......................................................................... RF
       SMC_N  112 kingkevtkkevsellesagiske......................................................................... 135 
                   +++ + + + ++ ++ +++++k+                                                                         
  CCD26665.1  951 DVDDGRGE-RAIEAIVGRQKLKKSfqyevkwkywkpkynswvprevlighgfeklvqkfddheasreglgyrelvpsviskhfedvgldseianhtp 1046
                  55444443.679999999999999************************************************************************* PP

                  ..CS-HHHHHHHHHHHHHHHHCCS--SEEEECTTTTTS-HHHHHHHHHHHHHHCTTSEEEEE-SSHHHC CS
                  ..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       SMC_N  136 ..lLSgGektLvalaLlfAiqkvkpaplyllDeidaaLDeknvkkvaellkeksknaQfivislreeml 202 
                    +LSgG+     + +++A  + +   l +lDe    LD     ++a  ++  s    +++is+++e++
  CCD26665.1 1047 lgSLSGGQL----VKVVIAGAMWNNPHLLVLDEPTNYLDRDSLGALAVAIRDWS--GGVVMISHNNEFV 1109
                  *******96....57788999999999************************999..8899999999876 PP

>> AAA_21  AAA domain, putative AbiEii toxin, Type IV TA system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.2e-05     0.013       3      32 ..     618     644 ..     617     655 .. 0.79
   2 !   13.3   0.2   9.4e-05     0.054     234     303 .]     702     766 ..     671     766 .. 0.81
   3 !   14.4   0.6   4.3e-05     0.025       3     101 ..     860     943 ..     859    1109 .. 0.53

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 2.2e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegl 32 
                 +l G+Ng+GKS+L++a+      + d++++
  CCD26665.1 618 GLCGRNGAGKSTLMRAIANG---QLDGFPD 644
                 699**************766...4444444 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 9.4e-05
      AAA_21 234 arelSdGtkrllalltallralkkgsllliDEpEngLHPkllrrllellkelsrngaQviltTHSpllld 303
                 + +lS G k  l l+ a+l+++   ++ll+DEp n+L+ + ++ l + l e+++  +  ++++H+  +ld
  CCD26665.1 702 VGSLSGGWKMKLELARAMLQRA---DILLLDEPTNHLDVSNVKWLEDYLLEHTD--ITSLIVSHDSGFLD 766
                 5556666666677777777777...9*******************999999988..99999999987775 PP

  == domain 3  score: 14.4 bits;  conditional E-value: 4.3e-05
      AAA_21   3 vliGpNgsGKSnLLdaldllarldrdvegltdelsggggirkipslldlydpeipfefeieeflsqgvryryglrlersqveeklssvetllesgllld 101
                 ++ GpNg+GKS+L+++l +          l + +++  + +  +  +   +  + ++ + e++ +q   +ry +  +r+ +      +++ +++ +  +
  CCD26665.1 860 AVLGPNGAGKSTLIKLLTG---------ELVPQEGKVEKHPNLRIGYIAQHALEHVNQHKEKTANQYLQWRYQFGDDREVL------LKESRKISEEEK 943
                 689**************54.........44444444555555555555555555555555555555555666666666666......444444444444 PP

>> Chromo  Chromo (CHRromatin Organisation MOdifier) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   1.3   1.9e-13   1.1e-10       2      54 .]     960    1011 ..     959    1011 .. 0.93

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 1.9e-13
                  EEEEEEEEEEETTEECEEEEEEETTSTGGGTEEEEGG.GCSSHSHHHHHHHHHH CS
      Chromo    2 eVerIidhrtdkdgleleYlVKWkglpysentWEpee.nlekcfqelideFkkr 54  
                   +e I+++++ k+    +Y VKWk + +++n+W p+e ++++ f++l+++F+++
  CCD26665.1  960 AIEAIVGRQKLKKSF--QYEVKWKYWKPKYNSWVPREvLIGHGFEKLVQKFDDH 1011
                  58*************..******************77699999********985 PP

>> AAA_29  P-loop containing region of AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00011     0.062      24      43 ..     616     635 ..     603     636 .. 0.78
   2 !   14.5   0.1   3.8e-05     0.022      18      48 ..     852     882 ..     845     888 .. 0.75

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 0.00011
      AAA_29  24 atlltGpsGsGKSTllDAiq 43 
                  + l G++G+GKSTl+ Ai+
  CCD26665.1 616 RYGLCGRNGAGKSTLMRAIA 635
                 56699***********9986 PP

  == domain 2  score: 14.5 bits;  conditional E-value: 3.8e-05
      AAA_29  18 eidlkgatlltGpsGsGKSTllDAiqalLvp 48 
                 +++l++ + + Gp+G+GKSTl+  ++  Lvp
  CCD26665.1 852 SLSLSSRVAVLGPNGAGKSTLIKLLTGELVP 882
                 5666677899***********9655555555 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00064      0.37       2      22 ..     617     637 ..     616     666 .. 0.87
   2 !   15.1   0.0   3.2e-05     0.018       1      30 [.     858     891 ..     858     903 .. 0.83

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00064
                 EEEEESTTSSHHHHHHHHHTS CS
    MMR_HSR1   2 vaivGrpNvGKStLinaltge 22 
                  ++ Gr  +GKStL++a+ + 
  CCD26665.1 617 YGLCGRNGAGKSTLMRAIANG 637
                 5799**************984 PP

  == domain 2  score: 15.1 bits;  conditional E-value: 3.2e-05
                 EEEEEESTTSSHHHHHHHHHTS....TEEESSST CS
    MMR_HSR1   1 evaivGrpNvGKStLinaltge....kaivsdkp 30 
                 +va++G   +GKStLi+ ltge    + +v+++p
  CCD26665.1 858 RVAVLGPNGAGKSTLIKLLTGElvpqEGKVEKHP 891
                 69*******************7544345666665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0008      0.46      95     122 ..     610     637 ..     517     658 .. 0.84
   2 !   14.9   0.0   3.1e-05     0.018      96     133 ..     852     890 ..     824     896 .. 0.80

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 0.0008
                  HHCTTSEEEEECSTTSSHHHHHHHHCTT CS
  RsgA_GTPase  95 ellkdktsvlvGqSGvGKStLinallpe 122
                  +l+k++   l+G  G+GKStL+ a+++ 
   CCD26665.1 610 RLIKGHRYGLCGRNGAGKSTLMRAIANG 637
                  567788999**************99875 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 3.1e-05
                  HCTT.SEEEEECSTTSSHHHHHHHHCTT-----S----- CS
  RsgA_GTPase  96 llkd.ktsvlvGqSGvGKStLinallpelelktgevsek 133
                   l+  + ++++G+ G+GKStLi+ l++el  + g+v ++
   CCD26665.1 852 SLSLsSRVAVLGPNGAGKSTLIKLLTGELVPQEGKVEKH 890
                  55543567789*****************99888888765 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       5.9   3.4e+03      70     105 ..     174     215 ..     126     264 .. 0.58
   2 !   16.0   0.0   2.3e-05     0.013      23      40 ..     618     635 ..     603     681 .. 0.88
   3 !   16.5   0.0   1.6e-05    0.0095      24     103 ..     861     945 ..     851     984 .. 0.62

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 5.9
      AAA_23  70 kvkayvelt...fenkdgry...trsiererelskkkgkttk 105
                 + k++++l    fen +  +   ++++e++++ + +k ++ k
  CCD26665.1 174 ECKSQIKLAieqFENANSNNtagQKIVEWNITDILSKFSKPK 215
                 333444444444444333334555555555555554444443 PP

  == domain 2  score: 16.0 bits;  conditional E-value: 2.3e-05
      AAA_23  23 lItGpNGaGKTTildAik 40 
                  ++G NGaGK+T+++Ai 
  CCD26665.1 618 GLCGRNGAGKSTLMRAIA 635
                 589*************97 PP

  == domain 3  score: 16.5 bits;  conditional E-value: 1.6e-05
      AAA_23  24 ItGpNGaGKTTildAiklaLygetprlsrks...grgfeksdve...iesegkvkayveltfenkdgrytrsiererelskkkgkt 103
                 + GpNGaGK+T++  ++  L  + ++ ++      + + ++  e    ++e++ ++y++ +++  d+r+ + ++++r+ s+++++ 
  CCD26665.1 861 VLGPNGAGKSTLIKLLTGELVPQEGKVEKHPnlrIGYIAQHALEhvnQHKEKTANQYLQWRYQFGDDRE-VLLKESRKISEEEKEM 945
                 68***********99998888765544444455434455555553323334666777888888888875.5555555555443332 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0012      0.67      10      38 ..     619     662 ..     617     761 .. 0.55
   2 !    9.8   0.0    0.0016       0.9       9      32 ..     860     883 ..     856     924 .. 0.78

  Alignments for each domain:
  == domain 1  score: 10.2 bits;  conditional E-value: 0.0012
      AAA_22  10 vtGesGtGKTtllrrlleqldeeakaee................e 38 
                 ++G  G+GK+tl+r +++    + ++++                 
  CCD26665.1 619 LCGRNGAGKSTLMRAIANGQL-DGFPDKdtlrtcfvehklqgeeG 662
                 79***************9863.34444434333333333333321 PP

  == domain 2  score: 9.8 bits;  conditional E-value: 0.0016
      AAA_22   9 vvtGesGtGKTtllrrlleqldee 32 
                 +v G+ G+GK+tl++ l+ +l+ +
  CCD26665.1 860 AVLGPNGAGKSTLIKLLTGELVPQ 883
                 799**************9988654 PP

>> AAA  ATPase family associated with various cellular activities (AAA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.66   3.8e+02      21      93 ..     194     278 ..     181     309 .. 0.76
   2 ?   -1.5   0.0       5.3   3.1e+03      57      91 ..     423     453 ..     412     463 .. 0.71
   3 ?    7.3   0.0      0.01       5.9       3      22 ..     619     638 ..     617     733 .. 0.62
   4 !    7.6   0.0    0.0082       4.7       2      23 ..     860     886 ..     859     959 .. 0.70

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.66
                 HHTHEEEEEETTTCSSS........STTHHHHHHHHHHHHHHHTS....TS.EEEEEETGGGHHHHHTTCCCHHHHHHHHHHHHHH CS
         AAA  21 elgvefleisgsellsk........yvgesekkirelfkeakeka....kp.silfiDEidalaksrsgseseeeervvnqLltel 93 
                 ++g++++e + +++lsk        +v es++ +   +++  +++    ++   lf   +da+a+++ ++ ++ ++ +v++Ll+++
  CCD26665.1 194 TAGQKIVEWNITDILSKfskpknpqLVRESSMLLISNLAQFFTNKspqeAHlIPLFQYALDAMAEKE-TTVKRAAQHAVDALLSAF 278
                 4678899999999999999999999666666655444444333333555443557777899999998.778888899999999876 PP

  == domain 2  score: -1.5 bits;  conditional E-value: 5.3
                 S.TSEEEEEETGGGHHHHHTTCCCHHHHHHHHHHHH CS
         AAA  57 a.kpsilfiDEidalaksrsgseseeeervvnqLlt 91 
                 + ++++++i+++ +l+++r      e e+ ++qLl+
  CCD26665.1 423 QlRQTVIVIENLTRLVNNR-----FEIESFIPQLLP 453
                 245799******9999999.....555566666665 PP

  == domain 3  score: 7.3 bits;  conditional E-value: 0.01
                 EESSTTSSHHHHHHHHHHHH CS
         AAA   3 lyGppGtGKTllakavakel 22 
                 l+G  G GK++l++a+a+  
  CCD26665.1 619 LCGRNGAGKSTLMRAIANGQ 638
                 89***************973 PP

  == domain 4  score: 7.6 bits;  conditional E-value: 0.0082
                 EEESSTTSSHHHHHHHHHHHH.....T CS
         AAA   2 llyGppGtGKTllakavakel.....g 23 
                  + Gp G GK++l+k +  el     +
  CCD26665.1 860 AVLGPNGAGKSTLIKLLTGELvpqegK 886
                 578**************9998554441 PP

>> MeaB  Methylmalonyl Co-A mutase-associated GTPase MeaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0     0.001      0.59      14      50 ..     599     635 ..     586     640 .. 0.85
   2 !    8.7   0.0    0.0014      0.79      17      59 ..     844     886 ..     826     888 .. 0.78

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.001
                 HHHHHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHH CS
        MeaB  14 eakellerllakaGraqvvGltGvPGaGkstlvealg 50 
                  ++ ll++ + +  + ++ Gl G  GaGkstl+ a++
  CCD26665.1 599 GSRMLLNKTTLRLIKGHRYGLCGRNGAGKSTLMRAIA 635
                 578899999999999*****************99875 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.0014
                 HHHHHHGGG-S-SEEEEEEE-TTSSHHHHHHHHHHHHHCTT-- CS
        MeaB  17 ellerllakaGraqvvGltGvPGaGkstlvealglelrrrGkr 59 
                   l++++ +   + +v + G  GaGkstl++ l+ el+ +  +
  CCD26665.1 844 PSLSHVSCSLSLSSRVAVLGPNGAGKSTLIKLLTGELVPQEGK 886
                 556777777778899*******************999866555 PP

>> AAA_28  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       7.5   4.3e+03      17      68 ..     209     261 ..     205     271 .. 0.67
   2 ?    7.0   0.0     0.011       6.6       4      66 ..     619     683 ..     616     696 .. 0.68
   3 !   10.8   0.0   0.00073      0.42       1      39 [.     858     902 ..     858     950 .. 0.60

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 7.5
      AAA_28  17 eaLaar.gypvvpEaareileeklakgedalpwvedllafaervleeqleeea 68 
                 +++++  + + v+E+   ++++++++ ++++p+++ l+ + +  l++ +e+e+
  CCD26665.1 209 SKFSKPkNPQLVRESSMLLISNLAQFFTNKSPQEAHLIPLFQYALDAMAEKET 261
                 55555337889999999999999988888899885555555555766666654 PP

  == domain 2  score: 7.0 bits;  conditional E-value: 0.011
      AAA_28   4 itGgestGKTtlleaLaar...gypvvpEaareileeklakgedalpwvedllafaervleeqlee 66 
                 + G  ++GK+tl++a+a+    g+p      + ++e+kl+ +e++l+ v  ++a+ e++    + e
  CCD26665.1 619 LCGRNGAGKSTLMRAIANGqldGFPDKDTLRTCFVEHKLQGEEGDLDLV-SFIALDEELQSTSRDE 683
                 568889***********86345666555555555666668888888887.7777777754444444 PP

  == domain 3  score: 10.8 bits;  conditional E-value: 0.00073
      AAA_28   1 kivitGgestGKTtlleaLa.....ar.gypvvpEaareileekl 39 
                 +++++G+ ++GK+tl++ L+     ++ +++ +p     ++ +++
  CCD26665.1 858 RVAVLGPNGAGKSTLIKLLTgelvpQEgKVEKHPNLRIGYIAQHA 902
                 799****************96555522333333444333333333 PP

>> DUF87  Helicase HerA, central domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.85   4.9e+02     135     202 ..     496     559 ..     417     571 .. 0.77
   2 ?    4.3   0.0     0.064        37      26      47 ..     617     638 ..     608     648 .. 0.82
   3 !   14.0   0.1   7.2e-05     0.041      22      49 ..     855     882 ..     847     895 .. 0.87
   4 ?   -2.0   0.1       5.2     3e+03     151     182 ..    1170    1201 ..    1124    1211 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.6 bits;  conditional E-value: 0.85
       DUF87 135 eklssdepveklleelkkekeelrklknqaiarlldkledllrkggsfsnsstdliallleklekegk 202
                 ++++s+e   +l e+l++ ++e+ k+       +ld l+++l+ +++  n+ t+l++ll+++l++++k
  CCD26665.1 496 TDAQSKE---FLVEHLNQLDDEETKNMILKDDVVLDYLTKVLTVQANV-NDWTKLTKLLVNVLGESKK 559
                 3444444...44444444446777777777788999999999999999.9999999999999998876 PP

  == domain 2  score: 4.3 bits;  conditional E-value: 0.064
       DUF87  26 lAilgsTGsGKSntvavLleel 47 
                  +  g+ G+GKS++++ + +  
  CCD26665.1 617 YGLCGRNGAGKSTLMRAIANGQ 638
                 6788999**********98865 PP

  == domain 3  score: 14.0 bits;  conditional E-value: 7.2e-05
       DUF87  22 vtrHlAilgsTGsGKSntvavLleelle 49 
                 ++ ++A+lg  G+GKS+++++L  el+ 
  CCD26665.1 855 LSSRVAVLGPNGAGKSTLIKLLTGELVP 882
                 5889*********************994 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 5.2
       DUF87  151 kkekeelrklknqaiarlldkledllrkggsf 182 
                  +k++++++++k qa++r l+ +e+l + +g+ 
  CCD26665.1 1170 RKKRLTRNEKKIQAERRRLRYIEWLSSPKGTP 1201
                  24566788999999999999999988887776 PP

>> AAA_18  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.015       8.8       3      25 ..     619     664 ..     618     735 .. 0.67
   2 !   10.6   0.0    0.0011      0.63       1      44 [.     859     900 ..     859     964 .. 0.63

  Alignments for each domain:
  == domain 1  score: 6.9 bits;  conditional E-value: 0.015
      AAA_18   3 ltGtpGvGKttlakeLskrl..gf.....................g 25 
                 l+G  G+GK+tl +++++    gf                      
  CCD26665.1 619 LCGRNGAGKSTLMRAIANGQldGFpdkdtlrtcfvehklqgeegdL 664
                 8999************775213335544444445554555555444 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.0011
      AAA_18   1 IlltGtpGvGKttlakeLskrlgfgvnlrdvakenglllevdpe 44 
                 +++ G+ G+GK+tl k L  +l  + + ++v k+ +l++++ ++
  CCD26665.1 859 VAVLGPNGAGKSTLIKLLTGEL--VPQEGKVEKHPNLRIGYIAQ 900
                 6899**************5555..44444444444444444444 PP

>> RNA_helicase  RNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0075       4.3       3      26 ..     619     642 ..     618     656 .. 0.81
   2 !    9.1   0.0    0.0029       1.7       2      29 ..     860     888 ..     859     924 .. 0.72

  Alignments for each domain:
  == domain 1  score: 7.8 bits;  conditional E-value: 0.0075
  RNA_helicase   3 lyGpsgeGKStlakeLakallkkl 26 
                   l+G++g GKStl++ +a+  l+ +
    CCD26665.1 619 LCGRNGAGKSTLMRAIANGQLDGF 642
                   79*************998766655 PP

  == domain 2  score: 9.1 bits;  conditional E-value: 0.0029
  RNA_helicase   2 wlyGpsgeGKStlakeLakall.kklklk 29 
                    + Gp+g GKStl+k L+ +l  ++ k +
    CCD26665.1 860 AVLGPNGAGKSTLIKLLTGELVpQEGKVE 888
                   588*************9999984333333 PP

>> AAA_16  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.093        54      30      51 ..     620     638 ..     611     749 .. 0.63
   2 !   12.1   0.0   0.00034      0.19      26      63 ..     858     890 ..     848     972 .. 0.68

  Alignments for each domain:
  == domain 1  score: 4.1 bits;  conditional E-value: 0.093
      AAA_16  30 sGesGvGKsslvrellralekd 51 
                  G  G GKs+l+r++++   ++
  CCD26665.1 620 CGRNGAGKSTLMRAIAN---GQ 638
                 5889**********996...33 PP

  == domain 2  score: 12.1 bits;  conditional E-value: 0.00034
      AAA_16  26 lvllsGesGvGKsslvrellralekdggiflrgkcdql 63 
                  v + G+ G GKs+l++ l  +l  +     +gk +++
  CCD26665.1 858 RVAVLGPNGAGKSTLIKLLTGELVPQ-----EGKVEKH 890
                 589*****************999999.....4555555 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.3     0.013       7.4      23      40 ..     619     636 ..     609     741 .. 0.79
   2 !    7.3   0.0    0.0061       3.5      21      46 ..     859     885 ..     849     966 .. 0.79

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.013
      AAA_30  23 ltGpAGtGKttalkalre 40 
                 l G+ G+GK+t+++a+++
  CCD26665.1 619 LCGRNGAGKSTLMRAIAN 636
                 67999**********986 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0061
      AAA_30  21 avltGpAGtGKttalkal.reaweaag 46 
                 +++ Gp G+GK+t++k l  e++ ++g
  CCD26665.1 859 VAVLGPNGAGKSTLIKLLtGELVPQEG 885
                 5788************99556666665 PP

>> AAA_27  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0018         1      32      60 ..     620     649 ..     605     659 .. 0.77
   2 ?    5.9   0.0     0.015       8.6      31      44 ..     861     874 ..     850     941 .. 0.86

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.0018
      AAA_27  32 yGpNEAGKstalrAisd.llfGipertkdn 60 
                  G N AGKst++rAi +  l G+p + +  
  CCD26665.1 620 CGRNGAGKSTLMRAIANgQLDGFPDKDTLR 649
                 79************9752566777666655 PP

  == domain 2  score: 5.9 bits;  conditional E-value: 0.015
      AAA_27  31 iyGpNEAGKstalr 44 
                 ++GpN AGKst+++
  CCD26665.1 861 VLGPNGAGKSTLIK 874
                 89*********986 PP

>> AAA_15  AAA ATPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.9       6.1   3.5e+03     110     183 ..     174     218 ..     139     244 .. 0.46
   2 !    9.0   0.0    0.0018         1      28      43 ..     619     634 ..     604     690 .. 0.84
   3 !   10.0   0.0    0.0009      0.52      17     116 ..     851     954 ..     846    1040 .. 0.65

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 6.1
      AAA_15 110 kkesdlkktikdkklklkknelsdekisvekkkskkelpkekeeklekekeelkidkedlkklikkleeslkke 183
                 +++s++k  i++++ ++++                             + +  ki   +++++++k+++ ++ +
  CCD26665.1 174 ECKSQIKLAIEQFENANSN-----------------------------NTAGQKIVEWNITDILSKFSKPKNPQ 218
                 2222222222222222221.............................22222233444444444444444444 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.0018
      AAA_15  28 liGkNnsGKSsileal 43 
                 l+G+N++GKS++++a+
  CCD26665.1 619 LCGRNGAGKSTLMRAI 634
                 8**************9 PP

  == domain 3  score: 10.0 bits;  conditional E-value: 0.0009
      AAA_15  17 veidlseeltvliGkNnsGKSsileal..dlFlnnkekkn............kkvikiekedleifeniseskdikIdvefaekekakeyektlkskek 101
                 ++++ls+    + G+N++GKS+++++l  +l  +     +            +     + e +++ +++  ++ ++ +++f   +++ e +  + +k +
  CCD26665.1 851 CSLSLSS-RVAVLGPNGAGKSTLIKLLtgELVPQ-----EgkvekhpnlrigY-IAQHALEHVNQHKEKTANQYLQWRYQF---GDDREVLLKESRKIS 939
                 7788888.88899**************2222222.....13345567888751.445567778888888888888888888...444444444444444 PP

      AAA_15 102 kkadlllkkkesdlk 116
                 ++++ +++k+++  +
  CCD26665.1 940 EEEKEMMTKLIDVDD 954
                 444444444444333 PP

>> AAA_33  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0093       5.4       4      35 ..     619     650 ..     618     691 .. 0.76
   2 !    7.3   0.0    0.0088       5.1       3      22 ..     860     879 ..     859     927 .. 0.80

  Alignments for each domain:
  == domain 1  score: 7.2 bits;  conditional E-value: 0.0093
      AAA_33   4 lvGlpGsGKstlaerllkklgavllssdtlrr 35 
                 l+G +G+GKstl + +++ +   + ++dtlr+
  CCD26665.1 619 LCGRNGAGKSTLMRAIANGQLDGFPDKDTLRT 650
                 69************988433355555555555 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0088
      AAA_33   3 llvGlpGsGKstlaerllkk 22 
                  + G++G+GKstl++ l  +
  CCD26665.1 860 AVLGPNGAGKSTLIKLLTGE 879
                 578**********9987644 PP

>> NACHT  NACHT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       6.3   3.7e+03      84     100 ..     360     397 ..     290     450 .. 0.55
   2 !    7.9   0.0    0.0047       2.7       6      33 ..     620     647 ..     616     729 .. 0.87
   3 ?    6.1   0.0     0.017       9.7       2      21 ..     858     877 ..     857     891 .. 0.85

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 6.3
                 E..........EEEE-STT-SS-TCH............ CS
       NACHT  84 L..........lilDglDelvtdlgq...........k 100
                 L          li+D l +  + ++            +
  CCD26665.1 360 LdnldlssrykLIIDTLQDPTKVPQSvkalssvtfvaE 397
                 15555555555777777777776666444444443222 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.0047
                 EC-TTTCHHHHHHHHHHHHCTS-SCCCC CS
       NACHT   6 qGeaGsGKTtLlqklalawaegklpqga 33 
                  G++G GK+tL++ +a    +g +++++
  CCD26665.1 620 CGRNGAGKSTLMRAIANGQLDGFPDKDT 647
                 69*************9887777666665 PP

  == domain 3  score: 6.1 bits;  conditional E-value: 0.017
                 CEEEEC-TTTCHHHHHHHHH CS
       NACHT   2 lvilqGeaGsGKTtLlqkla 21 
                  v++ G++G GK+tL++ l 
  CCD26665.1 858 RVAVLGPNGAGKSTLIKLLT 877
                 689************98765 PP

>> Dynamin_N  Dynamin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.27   1.6e+02       3      22 ..     619     638 ..     618     772 .. 0.70
   2 !   10.5   0.0   0.00082      0.47       1      89 [.     859     948 ..     859     984 .. 0.68

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.27
                 EEEBTTTTHHHHHHHHHTS- CS
   Dynamin_N   3 vvGsqSsGKSSvlnaLlged 22 
                 ++G   +GKS+++ a+   +
  CCD26665.1 619 LCGRNGAGKSTLMRAIANGQ 638
                 68999999**9999998655 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00082
                 EEEEEBTTTTHHHHHHHHHTS--S---SSS---S-EEEEECCT---C.CS...SSEEEE.T-EB--CHHHHHHHHHHHHHHHTSSSS--SS CS
   Dynamin_N   1 iavvGsqSsGKSSvlnaLlgedilprgpnptTrrplelqlgeeeeas.eravkeelkek.ekkledfsevreeieketekiagankgiskk 89 
                 +av+G   +GKS+++  L+ge   p +  +     l + +  +   +  +++ke+  ++  +  ++f + re + ke++ki+++ k++ +k
  CCD26665.1 859 VAVLGPNGAGKSTLIKLLTGEL-VPQEGKVEKHPNLRIGYIAQHALEhVNQHKEKTANQyLQWRYQFGDDREVLLKESRKISEEEKEMMTK 948
                 79******************98.46665555555566666555544432222222222245666666666666666666666655555554 PP

>> DUF815  Protein of unknown function (DUF815)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.016       9.4      44      75 ..     608     636 ..     572     649 .. 0.84
   2 ?    6.9   0.0    0.0054       3.1      56      97 ..     859     908 ..     852     921 .. 0.81

  Alignments for each domain:
  == domain 1  score: 5.3 bits;  conditional E-value: 0.016
      DUF815  44 teqfleglpannvLLwGarGtGKSslvkalln 75 
                 t ++++g+      L G  G+GKS+l++a+ n
  CCD26665.1 608 TLRLIKGH---RYGLCGRNGAGKSTLMRAIAN 636
                 55555554...34599*************987 PP

  == domain 2  score: 6.9 bits;  conditional E-value: 0.0054
      DUF815  56 vLLwGarGtGKSslvkallneyaeeg........Lrlievekedlkelpk 97 
                 v + G  G+GKS+l+k l+ e+  ++        Lr+  ++++ l+++++
  CCD26665.1 859 VAVLGPNGAGKSTLIKLLTGELVPQEgkvekhpnLRIGYIAQHALEHVNQ 908
                 66789**************9999887788888888888888888887766 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       8.1   4.7e+03      63      87 ..     366     390 ..     327     431 .. 0.69
   2 ?    4.4   0.0      0.06        35       8      47 ..     620     661 ..     614     705 .. 0.72
   3 ?    7.0   0.0    0.0097       5.6       5      49 ..     859     911 ..     856     954 .. 0.67

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 8.1
      AAA_14  63 ekktylflDEiqevpewekalkslv 87 
                 + ++ l++D  q  +++ + +k l 
  CCD26665.1 366 SSRYKLIIDTLQDPTKVPQSVKALS 390
                 4566688888888777777777664 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.06
      AAA_14   8 tGaRrvGKTtllkqlikell..vkkesilyinldderdkkla 47 
                  G   +GK+tl++ +++ +l   +++++l   + +++++ ++
  CCD26665.1 620 CGRNGAGKSTLMRAIANGQLdgFPDKDTLRTCFVEHKLQGEE 661
                 566789***********9999988888888888887776554 PP

  == domain 3  score: 7.0 bits;  conditional E-value: 0.0097
      AAA_14   5 lvitGaRrvGKTtllkqlikell........vkkesilyinldderdkkladp 49 
                 +++ G+  +GK+tl+k l  el          ++ +i yi+    +  ++ ++
  CCD26665.1 859 VAVLGPNGAGKSTLIKLLTGELVpqegkvekHPNLRIGYIAQHALEHVNQHKE 911
                 6799*************999988888875555555555555554444433333 PP

>> Roc  Ras of Complex, Roc, domain of DAPkinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.044        25       4      26 ..     619     641 ..     616     666 .. 0.78
   2 ?    6.0   0.0     0.023        13       1      24 [.     858     881 ..     858     920 .. 0.67

  Alignments for each domain:
  == domain 1  score: 5.1 bits;  conditional E-value: 0.044
                 EESSTTSSHHHHHHCHCT-CCC- CS
         Roc   4 lvGdsgvGKtsllkrfvedkfse 26 
                 l+G +g+GK++l++ + +++ + 
  CCD26665.1 619 LCGRNGAGKSTLMRAIANGQLDG 641
                 79**************9999875 PP

  == domain 2  score: 6.0 bits;  conditional E-value: 0.023
                 EEEEESSTTSSHHHHHHCHCT-CC CS
         Roc   1 KvvlvGdsgvGKtsllkrfvedkf 24 
                 +v ++G +g+GK++l+k ++ + +
  CCD26665.1 858 RVAVLGPNGAGKSTLIKLLTGELV 881
                 5889************98775443 PP

>> AAA_24  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.16        94       3      22 ..     615     634 ..     613     645 .. 0.86
   2 ?    8.1   0.0    0.0036       2.1       4      22 ..     858     876 ..     855     991 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.16
      AAA_24   3 lkiliyGpsgiGKTtlakel 22 
                  ++ + G +g+GK+tl++ +
  CCD26665.1 615 HRYGLCGRNGAGKSTLMRAI 634
                 577899**********9876 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.0036
      AAA_24   4 kiliyGpsgiGKTtlakel 22 
                 ++++ Gp+g+GK+tl+k l
  CCD26665.1 858 RVAVLGPNGAGKSTLIKLL 876
                 899*************988 PP

>> MukB  MukB N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.013       7.7      30      48 ..     618     636 ..     610     653 .. 0.81
   2 ?    3.7   0.0     0.078        45      30      54 ..     860     884 ..     852     892 .. 0.82

  Alignments for each domain:
  == domain 1  score: 6.2 bits;  conditional E-value: 0.013
                 HHHS--SHHHHHHHHHHHH CS
        MukB  30 tlsGgnGaGksttmaafvt 48 
                  l G nGaGkst m a+  
  CCD26665.1 618 GLCGRNGAGKSTLMRAIAN 636
                 588***********99865 PP

  == domain 2  score: 3.7 bits;  conditional E-value: 0.078
                 HHHS--SHHHHHHHHHHHHHHS--T CS
        MukB  30 tlsGgnGaGksttmaafvtaliPdl 54 
                 ++ G nGaGkst +  +   l+P  
  CCD26665.1 860 AVLGPNGAGKSTLIKLLTGELVPQE 884
                 45599*******9999999999976 PP

>> NTPase_1  NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.11        63       3      21 ..     618     636 ..     616     643 .. 0.87
   2 ?   -2.8   0.0       8.7     5e+03      77     103 ..     704     730 ..     680     730 .. 0.71
   3 ?    6.4   0.1     0.013       7.6       2      27 ..     859     884 ..     858     888 .. 0.82

  Alignments for each domain:
  == domain 1  score: 3.4 bits;  conditional E-value: 0.11
                 EEE--TTSSHHHHHHHHHH CS
    NTPase_1   3 fiTGppGvGKtTlvkkvle 21 
                  + G+ G GK+Tl++ +++
  CCD26665.1 618 GLCGRNGAGKSTLMRAIAN 636
                 589***********99875 PP

  == domain 2  score: -2.8 bits;  conditional E-value: 8.7
                 -HHHHHHHHHHHHHHHHHHH-EEEE-- CS
    NTPase_1  77 dvesfeelalealrkalseadviviDE 103
                  +   +++ le  r +l++ad++++DE
  CCD26665.1 704 SLSGGWKMKLELARAMLQRADILLLDE 730
                 4555677788888888899******99 PP

  == domain 3  score: 6.4 bits;  conditional E-value: 0.013
                 EEEE--TTSSHHHHHHHHHHHH...G CS
    NTPase_1   2 vfiTGppGvGKtTlvkkvlellkssg 27 
                 v++ Gp G GK+Tl+k ++ +l  ++
  CCD26665.1 859 VAVLGPNGAGKSTLIKLLTGELVPQE 884
                 7899************9999886655 PP

>> Zeta_toxin  Zeta toxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.064        37      21      38 ..     619     636 ..     606     649 .. 0.90
   2 ?    5.6   0.0     0.015       8.5      23      47 ..     863     887 ..     857     894 .. 0.84

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.064
  Zeta_toxin  21 lgGqpGAGKselaellkd 38 
                 l G  GAGKs+l++++++
  CCD26665.1 619 LCGRNGAGKSTLMRAIAN 636
                 7899*********99875 PP

  == domain 2  score: 5.6 bits;  conditional E-value: 0.015
  Zeta_toxin  23 GqpGAGKselaellkdelerqgnvv 47 
                 G  GAGKs+l++ll+ el +q++ v
  CCD26665.1 863 GPNGAGKSTLIKLLTGELVPQEGKV 887
                 789*************998777655 PP

>> TsaE  Threonylcarbamoyl adenosine biosynthesis protein TsaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.1     0.022        13      19      42 ..     614     637 ..     598     641 .. 0.80
   2 ?    3.9   0.0      0.09        52      19      43 ..     856     880 ..     840     891 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.022
                 TEEEEEEESTTSSHHHHHHHHHHH CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglaka 42 
                 g+   L G  GaGK+tl+r++a++
  CCD26665.1 614 GHRYGLCGRNGAGKSTLMRAIANG 637
                 455779999************986 PP

  == domain 2  score: 3.9 bits;  conditional E-value: 0.09
                 TEEEEEEESTTSSHHHHHHHHHHHT CS
        TsaE  19 gdvilLeGdLGaGKTtlvrglakal 43 
                 ++ ++  G+ GaGK+tl++ l  +l
  CCD26665.1 856 SSRVAVLGPNGAGKSTLIKLLTGEL 880
                 4458889************987766 PP

>> Thymidylate_kin  Thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0       1.1   6.2e+02       3      17 ..     621     635 ..     620     637 .. 0.88
   2 ?    8.8   0.0     0.002       1.2       3      65 ..     863     921 ..     861     940 .. 0.78

  Alignments for each domain:
  == domain 1  score: -0.1 bits;  conditional E-value: 1.1
                      ESTTSSHHHHHHHHH CS
  Thymidylate_kin   3 GlDGaGKttqaellk 17 
                      G +GaGK+t +++++
       CCD26665.1 621 GRNGAGKSTLMRAIA 635
                      779*******99987 PP

  == domain 2  score: 8.8 bits;  conditional E-value: 0.002
                      ESTTSSHHHHHHHHHHHHHHTTE.EEEESSSTTSHHHHHHHHHHHTCS---HHHHHHHHHHHH CS
  Thymidylate_kin   3 GlDGaGKttqaellkerlkeegikvvltrepggteiGekirelllkeeeleeqteallfaadr 65 
                      G +GaGK+t ++ll   l  +  k v ++++   +iG  ++++l+ +++  ++  a+ ++  r
       CCD26665.1 863 GPNGAGKSTLIKLLTGELVPQEGK-VEKHPNL--RIGYIAQHALE-HVNQHKEKTANQYLQWR 921
                      899***********9888777755.7888876..99999999999.77777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1212 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1176  (0.0655921); expected 358.6 (0.02)
Passed bias filter:                      507  (0.0282782); expected 358.6 (0.02)
Passed Vit filter:                        85  (0.00474092); expected 17.9 (0.001)
Passed Fwd filter:                        32  (0.00178482); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.97u 0.31s 00:00:01.28 Elapsed: 00:00:00.49
# Mc/sec: 7490.33
//
Query:       CCD26666.1  [L=731]
Description: hypothetical protein NDAI_0I00970 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1649  (0.0919739); expected 358.6 (0.02)
Passed bias filter:                      305  (0.0170115); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.27s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 5076.79
//
Query:       CCD26667.1  [L=255]
Description: hypothetical protein NDAI_0I00980 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1521  (0.0848346); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.23s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 1998.54
//
Query:       CCD26668.1  [L=409]
Description: hypothetical protein NDAI_0I00990 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-09   35.3   1.2    9.7e-09   35.3   1.2    3.4  3  zf-H2C2_2  Zinc-finger double domain
      3e-08   33.7  12.5    8.6e-05   22.8   1.7    3.0  3  zf-C2H2    Zinc finger, C2H2 type
    0.00017   22.1  11.8     0.0074   17.0   0.7    3.0  3  zf-C2H2_4  C2H2-type zinc finger
  ------ inclusion threshold ------
      0.072   13.1   1.9       0.11   12.6   0.1    2.1  2  zf-C2H2_6  C2H2-type zinc finger
      0.085   12.6   3.9      0.058   13.1   0.9    2.0  2  TMEM174    Transmembrane protein 174
      0.099   12.3   0.2       0.27   10.9   0.1    1.8  1  zf-MYST    MYST family zinc finger domain
       0.21   11.9   3.8        1.4    9.2   3.6    2.3  3  Hydin_ADK  Hydin Adenylate kinase-like domain
       0.32   11.4   7.3        1.3    9.5   0.1    2.9  3  zf-met     Zinc-finger of C2H2 type
       0.46   10.3   4.8          2    8.2   0.4    3.0  2  zf-H2C2_5  C2H2-type zinc-finger domain
        1.5    8.5   4.9        2.8    7.6   4.9    1.4  1  FAM176     FAM176 family
        6.5    5.8  10.6         12    5.0  10.6    1.3  1  TipE       Na+ channel auxiliary subunit TipE


Domain annotation for each model (and alignments):
>> zf-H2C2_2  Zinc-finger double domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.7      0.44   7.2e+02      12      25 ..      12      28 ..       4      29 .. 0.83
   2 !   35.3   1.2     6e-12   9.7e-09       1      25 [.      32      56 ..      32      57 .. 0.94
   3 ?   -0.2   0.2      0.98   1.6e+03       2      15 ..     222     240 ..     222     241 .. 0.74

  Alignments for each domain:
  == domain 1  score: 0.9 bits;  conditional E-value: 0.44
   zf-H2C2_2 12 ekpyeCp...lCdkaFk 25
                +k ++C    +C+ +F+
  CCD26668.1 12 KKLFQCTgykECSMVFT 28
                5669**99999999998 PP

  == domain 2  score: 35.3 bits;  conditional E-value: 6e-12
   zf-H2C2_2  1 nLrrHirkHtgekpyeCplCdkaFk 25
                +L rHirkHtgekp++C+ C   F+
  CCD26668.1 32 HLARHIRKHTGEKPFQCDICLRFFS 56
                699******************9997 PP

  == domain 3  score: -0.2 bits;  conditional E-value: 0.98
   zf-H2C2_2   2 LrrH....irkHtge.kpy 15 
                 L+ H    +++H+++ +p+
  CCD26668.1 222 LQAHsqpnMKVHPPKiNPH 240
                 5667666689**9987787 PP

>> zf-C2H2  Zinc finger, C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   1.7   5.3e-08   8.6e-05       1      23 []      15      40 ..      15      40 .. 0.98
   2 !   17.8   0.8     2e-06    0.0033       1      23 []      46      69 ..      46      69 .. 0.97
   3 ?   -3.2   0.1       9.5   1.6e+04       8      16 ..     251     259 ..     250     260 .. 0.81

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 5.3e-08
                EEET...TTTEEESSHHHHHHHHHCC CS
     zf-C2H2  1 ykCp...dCgksFkrksnLkrHirtH 23
                ++C+   +C+++F+r ++L rHir+H
  CCD26668.1 15 FQCTgykECSMVFTREEHLARHIRKH 40
                89***********************9 PP

  == domain 2  score: 17.8 bits;  conditional E-value: 2e-06
                EEETTTTEEESSHHHHHHHHHC.C CS
     zf-C2H2  1 ykCpdCgksFkrksnLkrHirt.H 23
                ++C++C + F+r +nLk+H+ t H
  CCD26668.1 46 FQCDICLRFFSRVDNLKQHRETvH 69
                89******************9999 PP

  == domain 3  score: -3.2 bits;  conditional E-value: 9.5
                 EEESSHHHH CS
     zf-C2H2   8 ksFkrksnL 16 
                  +++++s+L
  CCD26668.1 251 TTYSSSSQL 259
                 689999999 PP

>> zf-C2H2_4  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   1.2   0.00021      0.35       1      23 [.      15      40 ..      15      41 .. 0.86
   2 !   17.0   0.7   4.5e-06    0.0074       1      24 []      46      69 ..      46      69 .. 0.97
   3 ?   -2.4   0.1       8.1   1.3e+04       9      19 ..     252     267 ..     250     269 .. 0.56

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 0.00021
   zf-C2H2_4  1 fkCpi...CgksFsskkaLlrHlkth 23
                f+C+    C+ +F++ ++L rH+++h
  CCD26668.1 15 FQCTGykeCSMVFTREEHLARHIRKH 40
                56666677*****************9 PP

  == domain 2  score: 17.0 bits;  conditional E-value: 4.5e-06
   zf-C2H2_4  1 fkCpiCgksFsskkaLlrHlkthH 24
                f+C+iC + Fs+ ++L++H +t+H
  CCD26668.1 46 FQCDICLRFFSRVDNLKQHRETVH 69
                89********************99 PP

  == domain 3  score: -2.4 bits;  conditional E-value: 8.1
   zf-C2H2_4   9 sFsskka.....LlrH 19 
                 ++ss+++     L++H
  CCD26668.1 252 TYSSSSQlnltlLNKH 267
                 6777777444434556 PP

>> zf-C2H2_6  C2H2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.2       1.5   2.4e+03       5      14 ..      21      30 ..      21      40 .. 0.60
   2 ?   12.6   0.1   6.6e-05      0.11       2      24 ..      46      69 ..      46      71 .. 0.90

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.5
   zf-C2H2_6  5 svCsksFpsl 14
                ++Cs +F   
  CCD26668.1 21 KECSMVFTRE 30
                5788777654 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 6.6e-05
   zf-C2H2_6  2 heCsvCsksFpslqaLggHkks.H 24
                + C++C++ F+  ++L  H+ + H
  CCD26668.1 46 FQCDICLRFFSRVDNLKQHRETvH 69
                89*****************98745 PP

>> TMEM174  Transmembrane protein 174
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.9   3.6e-05     0.058     138     217 ..     243     323 ..     225     336 .. 0.78
   2 ?   -0.6   0.1      0.56   9.1e+02     177     205 ..     358     386 ..     343     400 .. 0.74

  Alignments for each domain:
  == domain 1  score: 13.1 bits;  conditional E-value: 3.6e-05
     TMEM174 138 sqdslglntaglqplssplg.lkssaaavtasgppqyytiypldnaafvedeessaalavdsenerssesaeeleekalee 217
                  + + +lnt++ ++++ +l+ l+ +  ++++++  +++++  +dn + v ++++ +  ++d+e+e+ ++++++ ++ +++e
  CCD26668.1 243 PNGENVLNTTYSSSSQLNLTlLNKHFHNIASTSGHNFVEVIHHDNKSLVLNKDKDKNEKEDEEEEEEEKKDDNIHSGNDSE 323
                 4566788999999999999989999***********************998888887777777666666666655554444 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.56
     TMEM174 177 ypldnaafvedeessaalavdsenersse 205
                  + dna++++d+ +s+ l+  ++n++ ++
  CCD26668.1 358 GTIDNAGYTDDDGTSNDLKKIANNTSVEK 386
                 5789*****99999988775333333333 PP

>> zf-MYST  MYST family zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00017      0.27      33      53 ..      46      66 ..      35      67 .. 0.90

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00017
     zf-MYST 33 yvCefClkYmksakelerHkk 53
                + C+ Cl++++  ++l++H++
  CCD26668.1 46 FQCDICLRFFSRVDNLKQHRE 66
                67*****************97 PP

>> Hydin_ADK  Hydin Adenylate kinase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0         3   4.9e+03      52      75 ..      88     111 ..      79     152 .. 0.74
   2 ?    5.1   2.2     0.015        24      73     154 ..     253     334 ..     243     337 .. 0.59
   3 ?    9.2   3.6   0.00083       1.4      62     156 ..     300     403 ..     288     407 .. 0.56

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 3
   Hydin_ADK  52 lCaeaaieqaekekeeaaeeaekk 75 
                 lC++ +i+q++++k ++ ++ ++ 
  CCD26668.1  88 LCLNGSINQKNNDKYKTIQDNTRI 111
                 788888888888887777776654 PP

  == domain 2  score: 5.1 bits;  conditional E-value: 0.015
   Hydin_ADK  73 ekkegqlsvealvkktselssaaeekaasskiskkkktsvvsg.kkkaesegaksqkqkekktsetaqissspplaapiarrL 154
                  ++++ql    l k+ ++++s++ ++ + ++i + +k+ v+++ k+k+e+e+ +++++++k+ + ++   s+p+++  ++ +L
  CCD26668.1 253 YSSSSQLNLTLLNKHFHNIASTSGHNFV-EVIHHDNKSLVLNKdKDKNEKEDEEEEEEEKKDDNIHSGNDSEPKKMDTTTEKL 334
                 4455667777788888888887777544.555554555555443444455555555555555555567788888877777666 PP

  == domain 3  score: 9.2 bits;  conditional E-value: 0.00083
   Hydin_ADK  62 ekekeeaaeeaekkegq....lsvealvkktselssaaeekaas.........skiskkkktsvvsgkkkaesegaksqkqkekktsetaqisssppla 147
                 eke ee++ee +k  +      s+++ + +t+e+ +++     +           +  +++  ++ ++  ++ +g+ ++ +k +++++ ++ ss+pp  
  CCD26668.1 300 EKEDEEEEEEEKKDDNIhsgnDSEPKKMDTTTEKLEMEL----QfikdssnsiCDTDGTTRVGTIDNAGYTDDDGTSNDLKKIANNTSVEKESSNPPVG 394
                 333333333333333332222344444433333333222....1222344222222333455566667888888888888888888888899******* PP

   Hydin_ADK 148 apiarrLsv 156
                 +p++ +Ls 
  CCD26668.1 395 SPTSSKLSL 403
                 *******96 PP

>> zf-met  Zinc-finger of C2H2 type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2     0.014        22       6      21 ..      23      38 ..      21      40 .. 0.87
   2 ?    9.5   0.1   0.00082       1.3       1      19 [.      46      64 ..      46      66 .. 0.96
   3 ?   -2.5   0.2         5   8.1e+03       7      17 ..     250     260 ..     250     260 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.014
      zf-met  6 CnvtfnsesqlksHlq 21
                C ++f+ e +l  H +
  CCD26668.1 23 CSMVFTREEHLARHIR 38
                **************54 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00082
      zf-met  1 fyCelCnvtfnsesqlksH 19
                f+C++C + f+   +lk+H
  CCD26668.1 46 FQCDICLRFFSRVDNLKQH 64
                89***************** PP

  == domain 3  score: -2.5 bits;  conditional E-value: 5
      zf-met   7 nvtfnsesqlk 17 
                 n+t++s sql+
  CCD26668.1 250 NTTYSSSSQLN 260
                 7899**99985 PP

>> zf-H2C2_5  C2H2-type zinc-finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.4    0.0012         2      15      26 .]      32      42 ..      21      42 .. 0.85
   2 ?    2.7   0.4     0.067   1.1e+02      14      24 ..      59      69 ..      56      70 .. 0.90

  Alignments for each domain:
  == domain 1  score: 8.2 bits;  conditional E-value: 0.0012
   zf-H2C2_5 15 nLkRHlrrkHtg 26
                 L RH+r kHtg
  CCD26668.1 32 HLARHIR-KHTG 42
                589****.***8 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.067
   zf-H2C2_5 14 snLkRHlrrkH 24
                +nLk+H +++H
  CCD26668.1 59 DNLKQHRETVH 69
                6*****99999 PP

>> FAM176  FAM176 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.9    0.0017       2.8      63      98 ..     292     330 ..     268     344 .. 0.53

  Alignments for each domain:
  == domain 1  score: 7.6 bits;  conditional E-value: 0.0017
      FAM176  63 eeseka...sededeeeeeeeedsseseaeeelsefert 98 
                  +++k+   +ede+eeeee+++d+ +s  ++e ++++ t
  CCD26668.1 292 LNKDKDkneKEDEEEEEEEKKDDNIHSGNDSEPKKMDTT 330
                 333333111444444444444444444444443443333 PP

>> TipE  Na+ channel auxiliary subunit TipE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0  10.6    0.0072        12     314     418 ..     279     391 ..     271     402 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0072
        TipE 314 yfviynedeeaalldkngeeediedelaetdegndnkidavneseaa...vtanhine...nnvdtaGstiindasttattplqql...lpnGtansst 403
                 +  +   d+++ +l+k+ ++++ ede  e +e +d++i++ n+se +    t++++ e   +  + + ++i +++ tt   ++++      +Gt+n   
  CCD26668.1 279 FVEVIHHDNKSLVLNKDKDKNEKEDEEEEEEEKKDDNIHSGNDSEPKkmdTTTEKL-EmelQFIKDSSNSICDTDGTTRVGTIDNAgytDDDGTSNDLK 376
                 55677889999*********************************976111445555.246666777888888899999999998752225678888888 PP

        TipE 404 nisqtntnttattnt 418
                 +i+++ ++   ++n+
  CCD26668.1 377 KIANNTSVEKESSNP 391
                 887777766655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1901  (0.106029); expected 358.6 (0.02)
Passed bias filter:                      734  (0.0409393); expected 358.6 (0.02)
Passed Vit filter:                       106  (0.00591221); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.62u 0.28s 00:00:00.90 Elapsed: 00:00:00.43
# Mc/sec: 2853.69
//
Query:       CCD26669.1  [L=323]
Description: hypothetical protein NDAI_0I01000 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    6.8e-21   74.9  24.3    6.8e-21   74.9  24.3    2.5  2  Syntaxin         Syntaxin
    1.1e-13   50.9   5.1    1.4e-13   50.6   3.0    2.4  2  SNARE            SNARE domain
     0.0048   16.6   2.4     0.0048   16.6   2.4    3.5  3  Synaptobrevin    Synaptobrevin
     0.0085   16.0   0.2      0.028   14.4   0.2    1.9  1  T2SSF            Type II secretion system (T2SS), protein F
     0.0086   14.9   0.1     0.0086   14.9   0.1    2.4  2  DUF2207          Predicted membrane protein (DUF2207)
  ------ inclusion threshold ------
      0.032   14.3   4.1       0.27   11.3   0.4    2.5  2  UPF0258          Uncharacterised protein family (UPF0258)
          1   10.0   6.1       0.82   10.3   0.7    2.8  2  DUF883           Bacterial protein of unknown function (DUF88
        1.6    9.1   4.5        0.6   10.5   0.1    2.4  2  PBP1_TM          Transmembrane domain of transglycosylase PBP
        2.8    8.0   5.7        1.6    8.7   0.9    2.5  2  DUF2116          Uncharacterized protein containing a Zn-ribb
        4.6    6.9  27.5      0.063   13.0  12.7    3.1  3  DUF745           Protein of unknown function (DUF745)
        6.4    6.8   7.2       0.67   10.0   0.4    2.9  4  DUF5345          Family of unknown function (DUF5345)


Domain annotation for each model (and alignments):
>> Syntaxin  Syntaxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9  24.3   4.2e-24   6.8e-21       3     199 ..      67     256 ..      65     258 .. 0.89
   2 ?    0.4   0.4      0.28   4.5e+02       6      43 ..     258     296 ..     255     300 .. 0.58

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 4.2e-24
    Syntaxin   3 effkeveeikkeiekleeevkklkkqneesktstraksvk.lkkrmesdikeikkraesvkarLeaLdksnkenekksgegsavdRirksqtaaLrkkl 100
                 +f++ ++ei++++e  e+++++++k + +++ ++++++   ++ ++++++++ +   +++k +++  +++  ++             +++q+++ r+k+
  CCD26669.1  67 QFMNRINEINQDLEIYERNINEIEKLQRQLLIQVNEEEESsIRYQLDNIVSQTSSLQNQLKFNIKDAQREGLHDT-----------NKQTQAENSRQKF 154
                 689999999999999999999999999999999999888889999999999988888888888887777776666...........456899999**** PP

    Syntaxin 101 kevmteynelrekireeykerieRrlevtGkevseeeieelietge.sevflqkllqeq.rga.realseieeRhkevlelekslkeLhqlFldmavLV 196
                  +++++y+ ++++ ++e k++ +R++ ++  e++eee+e+ i++ +  ++f+q ll+ + rg+ ++al+e++ Rh+e+l+leks+ eL+qlF dm  LV
  CCD26669.1 155 LKLIQDYRIIESNYKDENKQQAKRQYLIVQPEATEEEVENAISDTNgQQIFSQALLNANrRGEaKTALAEVQARHQELLQLEKSMAELNQLFNDMEQLV 253
                 ******************************************9887467788888888899999********************************999 PP

    Syntaxin 197 EeQ 199
                  eQ
  CCD26669.1 254 IEQ 256
                 776 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.28
    Syntaxin   6 keveeikkeiekleeevkk.lkkqneesktstraksvkl 43 
                 ++ve i k++e+ +e+v++ ++++n+ +k++ ra   k+
  CCD26669.1 258 ENVEVIDKNVEDAQEDVEQgVGHTNKAVKSARRARRNKI 296
                 456666666666666665435566666666655555544 PP

>> SNARE  SNARE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       7.9   1.3e+04       3      12 ..     112     121 ..     111     127 .. 0.61
   2 !   50.6   3.0   8.5e-17   1.4e-13       2      53 .]     259     310 ..     258     314 .. 0.96

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 7.9
                 HHHHHHHHHH CS
       SNARE   3 vDrIdtnVen 12 
                 +D+I +   +
  CCD26669.1 112 LDNIVSQTSS 121
                 7777766555 PP

  == domain 2  score: 50.6 bits;  conditional E-value: 8.5e-17
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTXXXXXXXXXXXXXXXXXXXX CS
       SNARE   2 mvDrIdtnVenaqsnveraqkeLkkavkyqksnRklkciillilviillvvl 53 
                  v  Id nVe+aq++ve++ ++++kavk+++ +R+ k+ + +i++ii+ +v+
  CCD26669.1 259 NVEVIDKNVEDAQEDVEQGVGHTNKAVKSARRARRNKIRCAIICFIIFAIVV 310
                 5788********************************************9997 PP

>> Synaptobrevin  Synaptobrevin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.2      0.42   6.8e+02      38      60 ..      20      42 ..      14      54 .. 0.82
   2 ?   -0.1   2.2      0.51   8.3e+02      31      46 ..     110     125 ..      67     135 .. 0.75
   3 !   16.6   2.4     3e-06    0.0048       3      87 ..     230     317 ..     228     319 .. 0.80

  Alignments for each domain:
  == domain 1  score: 0.1 bits;  conditional E-value: 0.42
                   CCCHHHHHHHHHHHHHHHHHHHH CS
  Synaptobrevin 38 dktenLqssaqqFkkqarklkrk 60
                   + +++L+++++++ ++  +l+++
     CCD26669.1 20 EASNDLSNKTNSYSNSNSNLNNN 42
                   67889999999999998888876 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.51
                    CCHHHHCCCCHHHHHH CS
  Synaptobrevin  31 ekldeLvdktenLqss 46 
                     +ld++v++t+ Lq++
     CCD26669.1 110 YQLDNIVSQTSSLQNQ 125
                    4799999999999986 PP

  == domain 3  score: 16.6 bits;  conditional E-value: 3e-06
                    XHHHHHHHHHHCCCCHHCCHHHHCHCCCCCHHHHCCCCHHHHH...HHHHHHHHHHHHHHHHHHHTXXXXXXXXXXXXXXXXXXXXXX CS
  Synaptobrevin   3 dklakikaevdevkdimkeNidkvlergekldeLvdktenLqs...saqqFkkqarklkrkmwwknmkliiililvvlililiiiivi 87 
                    ++l ++++ + e  ++ ++  + v+e +e+++ +++  e+ q+   +     ++a k +r+   +++++ ii +++++i+++++++++
     CCD26669.1 230 QELLQLEKSMAELNQLFNDMEQLVIEQQENVEVIDKNVEDAQEdveQGVGHTNKAVKSARRARRNKIRCAIICFIIFAIVVVVVVVPS 317
                    5677888888888888888888888888888888877777775111677799999999999999999999999999999999999876 PP

>> T2SSF  Type II secretion system (T2SS), protein F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   1.7e-05     0.028      22     121 ..     209     314 ..     202     317 .. 0.84

  Alignments for each domain:
  == domain 1  score: 14.4 bits;  conditional E-value: 1.7e-05
                 HHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHCT-TT.TS-HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHH.......HHHHHHHHTTXXXXXXXX CS
       T2SSF  22 laeeaengplaeelkriarrlraGgslsealertpssefpelvvqlirageeggnLaevLerlaeyleeerelr.......rkllaallepllllvval 113
                 l +  + g+ + +l+++ +r ++   l++++++ +   f ++ + +i++ e    +++  e+++e++e+   ++       r+ + +++  +++ ++++
  CCD26669.1 209 LLNANRRGEAKTALAEVQARHQELLQLEKSMAELNQ-LFNDMEQLVIEQQENVEVIDKNVEDAQEDVEQGVGHTnkavksaRRARRNKIRCAIICFIIF 306
                 4555568999999*******************9986.88******************************999998887766777777777777777777 PP

                 XXXXXXXX CS
       T2SSF 114 lvllilla 121
                 ++++++++
  CCD26669.1 307 AIVVVVVV 314
                 77777765 PP

>> DUF2207  Predicted membrane protein (DUF2207)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.5   8.2       8.2   1.3e+04     330     367 ..     101     164 ..       7     185 .. 0.51
   2 !   14.9   0.1   5.3e-06    0.0086     307     405 ..     214     318 ..     174     321 .. 0.69

  Alignments for each domain:
  == domain 1  score: -5.5 bits;  conditional E-value: 8.2
     DUF2207 330 seeg.ks......................lkeikkyakkskk.......kakkfkkalkkwksavkk...k 367
                  ee+  s                      +k+ +               k+++  ++ +k+ + +++    
  CCD26669.1 101 NEEEeSSiryqldnivsqtsslqnqlkfnIKDAQ-------ReglhdtnKQTQAENSRQKFLKLIQDyriI 164
                 2222222222221111111122111222212222.......122223334444455555555555445533 PP

  == domain 2  score: 14.9 bits;  conditional E-value: 5.3e-06
     DUF2207 307 ilkkndeeldpyEkalldlLfdkseegks....lkeikkyakkskkkakkfkkalkkwksavkk...kergyfdkkgkkklkklsalglgliilglili 398
                 ++ ++++ l++ + +  +lL+ +++   +    ++++++ + +++++ + + k++++ +++v++   ++++  +++ +++++k++ +++ +ii++++++
  CCD26669.1 214 RRGEAKTALAEVQARHQELLQLEKSMA-ElnqlFNDMEQLVIEQQENVEVIDKNVEDAQEDVEQgvgHTNKAVKSARRARRNKIRCAIICFIIFAIVVV 311
                 444444444444444444444222221.133567888888888888*********************99999999999999999999999999999999 PP

     DUF2207 399 llallll 405
                 ++++ ++
  CCD26669.1 312 VVVVPSV 318
                 8887665 PP

>> UPF0258  Uncharacterised protein family (UPF0258)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.2     0.031        50      71     131 ..      97     158 ..      70     166 .. 0.78
   2 ?   11.3   0.4   0.00017      0.27     119     150 ..     288     318 ..     236     320 .. 0.79

  Alignments for each domain:
  == domain 1  score: 4.0 bits;  conditional E-value: 0.031
     UPF0258  71 sWtieeydrkslhgnlakylkes.edPndlefWlediytPGydsllkkkeaelkrskvckiv 131
                    ++e +  s++ +l + ++++    n+l+f + d    G     k+ +ae  r+k  k++
  CCD26669.1  97 LIQVNEEEESSIRYQLDNIVSQTsSLQNQLKFNIKDAQREGLHDTNKQTQAENSRQKFLKLI 158
                 45567778888888888887755145789*************999***********998876 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 0.00017
     UPF0258 119 eaelkrskv.ckivllivllicivvvviivpiv 150
                  +  +r+k+ c i+ +i+++i++  vv++vp v
  CCD26669.1 288 ARRARRNKIrCAIICFIIFAIVV--VVVVVPSV 318
                 45567777767888888877654..44555544 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.3      0.31   5.1e+02       8      48 ..     106     146 ..      88     161 .. 0.71
   2 ?   10.3   0.7    0.0005      0.82       2      61 ..     237     299 ..     236     302 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.4 bits;  conditional E-value: 0.31
      DUF883   8 eslladleellkeaadeageeaeelRerleerlerarerlr 48 
                  s++ +l+++++++++  ++   ++++  +e l+++ ++++
  CCD26669.1 106 SSIRYQLDNIVSQTSSLQNQLKFNIKDAQREGLHDTNKQTQ 146
                 45666677777777777777666777777777777666655 PP

  == domain 2  score: 10.3 bits;  conditional E-value: 0.0005
      DUF883   2 eleaeleslladleellkeaadea...geeaeelRerleerlerarerlrdaeeavaerakea 61 
                 + +ael++l +d+e+l+ e++++    ++++e++ e +e+ + ++ ++++ a++a +++++ a
  CCD26669.1 237 KSMAELNQLFNDMEQLVIEQQENVeviDKNVEDAQEDVEQGVGHTNKAVKSARRARRNKIRCA 299
                 6799************9776655412278999***************9999999999888755 PP

>> PBP1_TM  Transmembrane domain of transglycosylase PBP1 at N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   1.0       1.7   2.8e+03      16      27 ..     145     156 ..     130     190 .. 0.49
   2 ?   10.5   0.1   0.00037       0.6      39      85 .]     263     309 ..     247     315 .. 0.55

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 1.7
     PBP1_TM  16 akakparkkasr 27 
                 ++a+++r+k  +
  CCD26669.1 145 TQAENSRQKFLK 156
                 333333333222 PP

  == domain 2  score: 10.5 bits;  conditional E-value: 0.00037
     PBP1_TM  39 yddeedDdddddeeeevprkgkkkkpprkkrr.wlwlliklflvlvvl 85 
                 +d++ +D  ++d e+ v + +k+ k+ r+ rr  +   i  f++++++
  CCD26669.1 263 IDKNVEDA-QEDVEQGVGHTNKAVKSARRARRnKIRCAIICFIIFAIV 309
                 34444554.455555665555555554444441466666666666554 PP

>> DUF2116  Uncharacterized protein containing a Zn-ribbon (DUF2116)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.3       0.3   4.8e+02      26      42 ..     166     182 ..     164     184 .. 0.85
   2 ?    8.7   0.9     0.001       1.6      30      55 ..     290     315 ..     282     319 .. 0.75

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.3
     DUF2116  26 eeyekkrkkvarsqqil 42 
                 ++y+ + k++a+ q+++
  CCD26669.1 166 SNYKDENKQQAKRQYLI 182
                 689999******99986 PP

  == domain 2  score: 8.7 bits;  conditional E-value: 0.001
     DUF2116  30 kkrkkvarsqqilfgililllavvlv 55 
                 ++r+  +r  +i f i++++++vv+v
  CCD26669.1 290 RARRNKIRCAIICFIIFAIVVVVVVV 315
                 56666699999999999997777766 PP

>> DUF745  Protein of unknown function (DUF745)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   4.2      0.27   4.3e+02      65     104 ..      12      51 ..       6     134 .. 0.73
   2 ?   -3.7   4.7         5   8.1e+03      97     117 ..     114     134 ..      69     189 .. 0.48
   3 ?   13.0  12.7   3.9e-05     0.063      81     182 ..     192     294 ..     171     295 .. 0.72

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.27
      DUF745  65 eqleqelreaeavvqeekkslqsseanakaaakaakqaqq 104
                  +l +  +ea++ +++ ++s+++s++n++   ++a++   
  CCD26669.1  12 YELSNPYEEASNDLSNKTNSYSNSNSNLNNNPNIASSNAY 51 
                 5677888999999999999999999999988877765433 PP

  == domain 2  score: -3.7 bits;  conditional E-value: 5
      DUF745  97 kaakqaqqqlealkallkaak 117
                 ++++q  +  ++lk  +k a+
  CCD26669.1 114 NIVSQTSSLQNQLKFNIKDAQ 134
                 222222222222222222222 PP

  == domain 3  score: 13.0 bits;  conditional E-value: 3.9e-05
      DUF745  81 ekkslqsseanakaaaka.akqaqqqlealkallkaakenlenaeqvaagaqqelaektqlleaAkkRveeLkkqlkearkdlektkkaAykAacAAqe 178
                 ++++++ ++ +    ++  +++ + ++++  a ++a +++l ++e+  a+ +q +++ +ql+ + ++ ve + k++++a++d e+    ++kA ++A+ 
  CCD26669.1 192 VENAISDTNGQQIFSQALlNANRRGEAKTALAEVQARHQELLQLEKSMAELNQLFNDMEQLVIEQQENVEVIDKNVEDAQEDVEQGVGHTNKAVKSARR 290
                 33333333222222211101222334455555667777788899999999************************************************* PP

      DUF745 179 Akqk 182
                 A+++
  CCD26669.1 291 ARRN 294
                 *986 PP

>> DUF5345  Family of unknown function (DUF5345)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       5.3   8.7e+03      14      27 ..      88      97 ..      76     112 .. 0.49
   2 ?   -1.0   0.1       1.1   1.7e+03       7      32 ..     111     136 ..     106     156 .. 0.74
   3 ?   -1.9   0.0       2.1   3.4e+03      20      31 ..     247     258 ..     229     266 .. 0.62
   4 ?   10.0   0.4   0.00041      0.67      22      60 ..     281     319 ..     257     321 .. 0.81

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 5.3
     DUF5345 14 vetPsleeleqlla 27
                +     e+l+++l 
  CCD26669.1 88 E----IEKLQRQLL 97
                3....334444333 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 1.1
     DUF5345   7 rlDqlievetPsleeleqllaeeker 32 
                 +lD  +++ +  +++l+  +++++++
  CCD26669.1 111 QLDNIVSQTSSLQNQLKFNIKDAQRE 136
                 67777777766667777777777665 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 2.1
     DUF5345  20 eeleqllaeeke 31 
                 +++eql+ e++e
  CCD26669.1 247 NDMEQLVIEQQE 258
                 456677766665 PP

  == domain 4  score: 10.0 bits;  conditional E-value: 0.00041
     DUF5345  22 leqllaeekerkrkrlrrElllFlliAllilsllllalv 60 
                  ++ ++++++++r + r  +++F++ A++++ +++ ++v
  CCD26669.1 281 TNKAVKSARRARRNKIRCAIICFIIFAIVVVVVVVPSVV 319
                 567899999**********************99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3609  (0.201294); expected 358.6 (0.02)
Passed bias filter:                      780  (0.0435049); expected 358.6 (0.02)
Passed Vit filter:                        81  (0.00451782); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.76u 0.30s 00:00:01.06 Elapsed: 00:00:00.47
# Mc/sec: 2079.61
//
Query:       CCD26670.1  [L=219]
Description: hypothetical protein NDAI_0I01010 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1274  (0.0710581); expected 358.6 (0.02)
Passed bias filter:                      424  (0.0236488); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1599.16
//
Query:       CCD26671.1  [L=959]
Description: hypothetical protein NDAI_0I01020 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.3e-30  105.1   0.2    1.2e-29  102.7   0.2    2.4  1  RTP1_C1   Required for nuclear transport of RNA pol II C-term
  ------ inclusion threshold ------
       0.82   10.4  13.7       0.37   11.5   3.8    4.3  3  PMC2NT    PMC2NT (NUC016) domain


Domain annotation for each model (and alignments):
>> RTP1_C1  Required for nuclear transport of RNA pol II C-terminus 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.2   1.3e-33   1.2e-29       2     111 ..     735     842 ..     734     843 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 1.3e-33
     RTP1_C1   2 qealkdlqdpllpvrahglvlLrkliekkskeavldiekilkllleaLkdedsYvYLnaikgLvaLadvfpeevlklLleeyeeenekeslderlkvGE 100
                 ++++ dl+dpl+p++ahglv+Lr+li+kks  +v+d+++ ++++l+ +k++d+++Y+naikg+++L++  ++++++ Lle y++ +++++ld+ lkvGE
  CCD26671.1 735 HRVMMDLNDPLVPIKAHGLVELRQLIKKKS--KVIDVDRGVQIHLQFMKNQDPFIYMNAIKGFASLIQLETDKTMNVLLEFYRDDKSRNKLDDILKVGE 831
                 67899*************************..******************************************************************* PP

     RTP1_C1 101 aLlrvirrlge 111
                  ++++++  ++
  CCD26671.1 832 IFINYVQYENK 842
                 ******98775 PP

>> PMC2NT  PMC2NT (NUC016) domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1     0.065   5.9e+02      27      74 ..     532     578 ..     506     584 .. 0.69
   2 ?   11.5   3.8   4.1e-05      0.37      14      64 ..     578     634 ..     572     667 .. 0.79
   3 ?    2.1   0.5     0.035   3.1e+02      25      77 ..     676     743 ..     646     746 .. 0.62

  Alignments for each domain:
  == domain 1  score: 1.3 bits;  conditional E-value: 0.065
      PMC2NT  27 ksldeqserllslinsllklaaskseisassklededdveekfksvvd 74 
                 ++ +++++  l+++n+ +k ++s++++s+  +l +edd++ ++  ++d
  CCD26671.1 532 NDDEKTKDIFLTILNRWVKKTTSRHDQSTL-SLGEEDDINGNVMVLID 578
                 45566777789999***********99885.77777776655544444 PP

  == domain 2  score: 11.5 bits;  conditional E-value: 4.1e-05
      PMC2NT  14 Dldfyrsldpefaksldeqserllslinsllklaaskseisas......sklededd 64 
                 Dl+  + +++ef++++ +q++ +l++in+l++ ++ ++++ ++      s++ede+d
  CCD26671.1 578 DLKLLEKMNQEFKTDIIKQTKDVLTVINDLVDFVQFQDDKLKEeeetvdSDDEDEED 634
                 8889999***********************999999888877777766533333333 PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.035
      PMC2NT  25 faksldeqserllslinsllklaaskseisas................sklededdveekfksvvdvvD 77 
                 +++ l +  e+l++ in++ ++ +  +++++                 +++ ++d+ e+  + ++d++D
  CCD26671.1 676 YKNILSSIDEKLMKFINNVPECKTLHENVQSVlndqqfdkmgpeaelvDEELEKDK-ETLHRVMMDLND 743
                 56677777788888888886666666666444445555555555454422222222.224444666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (959 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1268  (0.0707234); expected 358.6 (0.02)
Passed bias filter:                      533  (0.0297284); expected 358.6 (0.02)
Passed Vit filter:                        71  (0.00396006); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.25s 00:00:01.01 Elapsed: 00:00:00.43
# Mc/sec: 6756.44
//
Query:       CCD26672.1  [L=717]
Description: hypothetical protein NDAI_0I01030 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   4.3e-218  725.4  37.8     6e-218  724.9  37.8    1.2  1  HSP90          Hsp90 protein
    1.5e-14   54.4   0.0      3e-14   53.5   0.0    1.5  1  HATPase_c      Histidine kinase-, DNA gyrase B-, and HSP90-li
    1.1e-09   38.3   0.0    3.7e-09   36.5   0.0    2.0  1  HATPase_c_3    Histidine kinase-, DNA gyrase B-, and HSP90-li
  ------ inclusion threshold ------
       0.16   11.8   6.1       0.11   12.3   3.1    2.2  2  Bacillus_HBL   Bacillus haemolytic enterotoxin (HBL)
        7.9    7.3   7.9        2.7    8.8   3.1    2.6  3  Tau95          RNA polymerase III transcription factor (TF)II


Domain annotation for each model (and alignments):
>> HSP90  Hsp90 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  724.9  37.8  1.7e-221    6e-218       1     513 [.     183     704 ..     183     709 .. 0.93

  Alignments for each domain:
  == domain 1  score: 724.9 bits;  conditional E-value: 1.7e-221
                 GGGSHHHHHHHHHHCCTTSSS-EEEEEEEEXXXXXX..XXXXXXXXXXXX.......XXXXXXXX...XXXXXX..XXXXXXXXXXEEEEEEESXXSXG CS
       HSP90   1 eyleekklkelvkkySeFinfpiyllkekeeekeve..eeeeeeeeeeee.......eeeeakve...eeeeeeeekkktkkvketvkewellNkqkpi 87 
                 eyleek++ke++k++SeF+ +pi+ll++ke+ek+v+  e eeee++ee+e       e++++k+e   e+e+eee+k+ktkkvke+vke e+lNk+kp+
  CCD26672.1 183 EYLEEKRIKEVIKRHSEFVAYPIQLLVTKEVEKDVPiaE-EEEEKKEETEeekkegeEDKKPKLEevkEDEDEEEKKPKTKKVKEEVKELEELNKTKPL 280
                 8**********************************9742.222222222246788877777777733344455555*********************** PP

                 GGSXGGGSXHHHHHHHHHHTTTTTSXXSEEEEEEEXSSSXEEEEEEEXSSXXTTTTTTTTTSXXTTEEEEETTEEEESXXTTSSXGGGTTXEEEEEESS CS
       HSP90  88 WlrkpkevteeeYkeFYkslskdsedplavkhfsaegevefkaiLfvPkrapsdlfekykkkkknnikLYvrrVfitdefedllPkyLsFvkGvvdsdd 186
                 W+r+p+e+++eeY++FYks+s+d+edpl+vkhfs+eg++efkaiLf+P+rap+dlfe+  kkkk+nikLYvrrVfitde+edl+P++LsFvkGvvds+d
  CCD26672.1 281 WTRNPSEISQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFKAILFIPSRAPFDLFES--KKKKSNIKLYVRRVFITDEAEDLIPDWLSFVKGVVDSED 377
                 *********************************************************8..799************************************ PP

                 SXSSSTHHHHHTCHHHHHHHHHHHHHHHHHHHTSXHHH..HHTHHHHHHHHHHHHHHHXGGGHHHHHTTXEEEETTEEEEEEEHHHHHHHSXTTXXEEE CS
       HSP90 187 LPLNvsREtlqqnkilkvikkklvrKvlemlkklaeekeeykkfykefsknlklGiiedsanrkklakLlrfksskseeeltsLedYvermkekqksiY 285
                 LPLN+sRE+lqqnki+kvi+k++v+K++e ++++ae++e+++kfy +fskn+klG++ed++nr+ lakLlr++s+ks++eltsL+dYv+rm+e+qk+iY
  CCD26672.1 378 LPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFDKFYTAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSTDELTSLTDYVTRMQEHQKNIY 476
                 *************************************************************************************************** PP

                 EEEXSSHHHHHTSGGGHHHHHTTXXEEEEXSTTHHHHHHTXSEETTEEEEETTBSTXXXXXXHHHHHHHHHHHHHHHHHHHHHHHTTTTTESEEEEXSS CS
       HSP90 286 yiageskeevekspflerlkkkgyevlylvdpiDeyvvqqlkeyegkklvnvakegleleeeeeekkkkeelkkkfeeltkllkevlkdkvekvkvser 384
                 yi+ges++++ekspfl++lk+k++evl+l dpiDey+++q+ke++gk+lv+++k+ +elee+eeek+++e++ k+fe+ltk+lke+l+++vekv+vs +
  CCD26672.1 477 YITGESIKAIEKSPFLDALKAKDFEVLFLADPIDEYAFTQMKEFDGKTLVDITKD-FELEETEEEKAEREKEIKEFEPLTKALKEILGEQVEKVVVSYK 574
                 ******************************************************7.9****************************************** PP

                 XSSXSEEEEBXTTSXXHHHHHHHHHHHHHHHSSTSSSSSXEEEEEXTTSHHHHHHHHHHHH.TTTXHHHHHHHHHHHHHHHHHTTXXXSXHHHHHHHHH CS
       HSP90 385 lvdsPcvlvtseygwsanmerimkaqalrdkskssymsskktleinprhpiikeLkkkvee.dkedeeakdlaellyetallesGfsledpasfakrie 482
                 l d+P+++ t+++gwsanmerimkaqalrd+++ssymsskkt+ei p+ +iikeLkk+v+e  ++d+++kdl++llyetall+sGfsle+p+sfa+ri+
  CCD26672.1 575 LLDAPAAIRTGQFGWSANMERIMKAQALRDSTMSSYMSSKKTFEISPKSAIIKELKKRVDEgGAQDKTVKDLTNLLYETALLTSGFSLEEPNSFAARIN 673
                 ***********************************************************9956789********************************* PP

                 HHHTTTTHXXSTTTTTTGGGXGGGXXXXXXX CS
       HSP90 483 rllklslgidedeeveeeeeveeeeeeeeee 513
                 rl++l+l+idedee +++e+++ e+++e+e 
  CCD26672.1 674 RLISLGLNIDEDEEDNDDEKAAPESTTEAEV 704
                 *********7666666555544444444333 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   8.2e-18     3e-14       1     111 [.      26     180 ..      26     181 .. 0.83

  Alignments for each domain:
  == domain 1  score: 53.5 bits;  conditional E-value: 8.2e-18
                 EHHHHHHHHHHHHHHHHHHH.........HS.TTTEEEEEEEEEETEEEEEEEESSSSSTTHHHT.......GTCS.TTCH.....HCSTCHTSTSSSH CS
   HATPase_c   1 gdekrLrqiisnlvdNavkf.........at.kageieveikaseddlvisveDnGiGipkedlk.......klfe.kfsq.....ddstkrggggtGl 76 
                 ++e++Lr++isn++d+ +k+         +  +++e++++++++ +++v++++D+GiG++k++l        k+++ +f++     +d +++g++g+G+
  CCD26672.1  26 NKEIFLRELISNASDAIDKIryqalsdpkQLeTEPELFIRLTPKPEEKVLEIRDSGIGMTKAELInnlgtiaKSGTkAFMEalsagADVSMIGQFGVGF 124
                 5899****************99998887522467799999997668******************99******999999999998788888888888887 PP

                 .HHHHH.............HH.HHH.HTTTEEEE.....EEET..TTEEEEEEEEESS CS
   HATPase_c  77 .Glsiv.............kk.lve.lmgGeiwv.....esep..grGttftftlple 111
                  +l +v             ++ ++e   gG+++v     +  +  grGt  +++l+ +
  CCD26672.1 125 ySLFLVadrvqviskhnddEQyIWEsNAGGSFTVtldetN--EriGRGTILRLFLKDD 180
                 7888889999888888888666888889999988655432..1569999999998875 PP

>> HATPase_c_3  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0     1e-12   3.7e-09       1      99 [.      24     145 ..      24     159 .. 0.82

  Alignments for each domain:
  == domain 1  score: 36.5 bits;  conditional E-value: 1e-12
  HATPase_c_3   1 ysl.ekAlaelvdNsldAdaen................vkievnknrgktgeivieDdGkGmseeelknal.rlatsskeakrksts.......lGkk 73 
                  ys+ e+ l el+ N+ dA  +                   i +  ++ +++ + i+D G Gm+++el+n l ++a+s ++a  ++ s       +G++
   CCD26672.1  24 YSNkEIFLRELISNASDAIDKIryqalsdpkqletepeLFIRLTPKP-EEKVLEIRDSGIGMTKAELINNLgTIAKSGTKAFMEALSagadvsmIGQF 120
                  566688899********987778899999999999999556665554.469******************7757999999976533333444455**** PP

  HATPase_c_3  74 GiGlklAslslgkkltvitkkegess 99 
                  G+G + + + ++++++vi+k++++++
   CCD26672.1 121 GVG-FYSLFLVADRVQVISKHNDDEQ 145
                  ***.*****************98765 PP

>> Bacillus_HBL  Bacillus haemolytic enterotoxin (HBL)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   3.1     3e-05      0.11      64     142 ..     398     475 ..     370     489 .. 0.84
   2 ?   -1.8   0.0      0.65   2.3e+03     118     141 ..     665     688 ..     623     711 .. 0.56

  Alignments for each domain:
  == domain 1  score: 12.3 bits;  conditional E-value: 3e-05
  Bacillus_HBL  64 nevkPqliktiqdiigYstkFqsyyktlveavdkkdkaellellekLqeeiqqnqkevkqlikeLkklklklakdsknF 142
                   +++ ++li+  ++i + s++F+++y+  +++++ +  ++  ++  +L + +  n+ ++++ +  L+++ +++++ +kn 
    CCD26672.1 398 KNIVKKLIEAFNEIAEDSEQFDKFYTAFSKNIKLGVHEDTQNR-AALAKLLRYNSTKSTDELTSLTDYVTRMQEHQKNI 475
                   68899***************************99988887665.6899999999*****************99999885 PP

  == domain 2  score: -1.8 bits;  conditional E-value: 0.65
  Bacillus_HBL 118 qkevkqlikeLkklklklakdskn 141
                    ++  + i+ L +l l++++d+++
    CCD26672.1 665 PNSFAARINRLISLGLNIDEDEED 688
                   345556666777777777777666 PP

>> Tau95  RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   3.1   0.00077       2.7      46      84 ..     234     284 ..     190     293 .. 0.63
   2 ?   -1.3   0.1      0.95   3.4e+03      46      77 ..     367     410 ..     323     472 .. 0.60
   3 ?   -1.9   0.0       1.5   5.3e+03      38      77 ..     612     652 ..     571     658 .. 0.65

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00077
                 -............--S--TT-----...HHHHHHHHHHHHHHHH-SEEEHH CS
       Tau95  46 k............PtepeeelvkelkekkelqkaveelkklfeerPiwtrr 84 
                 k              +++e+ ++++ ++k+ +++v+el++l + +P+wtr+
  CCD26672.1 234 KkegeedkkpkleEVKEDEDEEEKKPKTKKVKEEVKELEELNKTKPLWTRN 284
                 133333333222222233333333344499*******************97 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.95
                 -...........-.-S--TT-----...HHHHHHHHHHHHHHHH CS
       Tau95  46 k...........P.tepeeelvkelkekkelqkaveelkklfee 77 
                 +           P +  +e+l++++  k + ++ v++l ++f+e
  CCD26672.1 367 SfvkgvvdsedlPlNLSREMLQQNKIMKVIRKNIVKKLIEAFNE 410
                 34555555666663333334444444444444455566666654 PP

  == domain 3  score: -1.9 bits;  conditional E-value: 1.5
                 X-----EE--.-S--TT-----...HHHHHHHHHHHHHHHH CS
       Tau95  38 rkkktivlkP.tepeeelvkelkekkelqkaveelkklfee 77 
                 + kkt  ++P ++  +el+k+ +e  +++k+v+ l +l+ e
  CCD26672.1 612 SSKKTFEISPkSAIIKELKKRVDEGGAQDKTVKDLTNLLYE 652
                 23333333464555677777777778888888888888866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2320  (0.129399); expected 358.6 (0.02)
Passed bias filter:                      658  (0.0367003); expected 358.6 (0.02)
Passed Vit filter:                       133  (0.00741815); expected 17.9 (0.001)
Passed Fwd filter:                        27  (0.00150594); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.91u 0.27s 00:00:01.18 Elapsed: 00:00:00.45
# Mc/sec: 4754.85
//
Query:       CCD26673.1  [L=487]
Description: hypothetical protein NDAI_0I01040 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-05   22.9   6.1    0.00015   21.8   6.1    1.6  1  RINGv           RING-variant domain
     0.0032   17.5   0.0     0.0079   16.3   0.0    1.6  1  DiS_P_DiS       Bacterial Peptidase A24 N-terminal domain
  ------ inclusion threshold ------
       0.31   11.4  13.4       0.17   12.2   8.2    2.3  2  zf-RING_2       Ring finger domain
       0.89    9.8   8.5         16    5.8   5.8    2.3  2  FANCL_C         FANCL C-terminal domain
        6.5    6.8   8.5         24    5.0   0.1    2.3  2  zinc-ribbons_6  zinc-ribbons


Domain annotation for each model (and alignments):
>> RINGv  RING-variant domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   6.1   4.3e-08   0.00015       1      39 [.      12      48 ..      12      53 .. 0.88

  Alignments for each domain:
  == domain 1  score: 21.8 bits;  conditional E-value: 4.3e-08
                ETTTTEE-SSSS.--B-SS--STCCCSB-HHHHHHHHHHT CS
       RINGv  1 CriCleeeeese.plispCkCrGslklvHesClekWldek 39
                C+iClee e ++  li++C C+     vH++C  +W+ ++
  CCD26673.1 12 CWICLEESEYDQtWLIHKCGCNL---QVHKTCYLQWIYKR 48
                *******99998789******87...8**********884 PP

>> DiS_P_DiS  Bacterial Peptidase A24 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.2e-06    0.0079      18      48 ..     116     146 ..      70     150 .. 0.83

  Alignments for each domain:
  == domain 1  score: 16.3 bits;  conditional E-value: 2.2e-06
   DiS_P_DiS  18 pkkkslvkprSrCpkCghklkwleliPvlSy 48 
                  ++ sl+  rS+Cp+C++++++++l P  S 
  CCD26673.1 116 VNTDSLILSRSQCPQCQKQIQLTDLRPYKSP 146
                 33459******************99987665 PP

>> zf-RING_2  Ring finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   8.2   4.8e-05      0.17       2      37 ..      11      48 ..      10      50 .. 0.78
   2 ?    1.7   0.2     0.094   3.4e+02      35      44 .]     123     132 ..     117     132 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 4.8e-05
   zf-RING_2  2 eCpICleelssadsvlllpCg..HvfhreClerwlrss 37
                 C IClee + ++++l+ +Cg     h++C  +w+ ++
  CCD26673.1 11 RCWICLEESEYDQTWLIHKCGcnLQVHKTCYLQWIYKR 48
                6********99999875555420569********8765 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.094
   zf-RING_2  35 rssstCPlCr 44 
                  s+s+CP C+
  CCD26673.1 123 LSRSQCPQCQ 132
                 57788****5 PP

>> FANCL_C  FANCL C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.8    0.0044        16       2      43 ..       9      47 ..       8      61 .. 0.83
   2 ?    4.2   0.0     0.014        49      50      67 ..     120     137 ..     109     139 .. 0.78

  Alignments for each domain:
  == domain 1  score: 5.8 bits;  conditional E-value: 0.0044
                --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHH CS
     FANCL_C  2 eveCgiCyayrldsgevpdisCdnekCnkkfHsaCLkeWlrs 43
                + +C iC+ +   +++  +  C    Cn+++H++C  +W+ +
  CCD26673.1  9 TCRCWICLEESEYDQTWLIHKC---GCNLQVHKTCYLQWIYK 47
                57899***99997778888888...5*************854 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.014
                 TTT--EEE-TTT-SEEEG CS
     FANCL_C  50 sfdvlfGeCPyCkkkisv 67 
                 s+ ++  +CP C+k+i++
  CCD26673.1 120 SLILSRSQCPQCQKQIQL 137
                 55667789*******986 PP

>> zinc-ribbons_6  zinc-ribbons
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   4.1     0.018        65      16      45 ..       9      40 ..       4      44 .. 0.89
   2 ?    5.0   0.1    0.0066        24      30      41 ..     126     137 ..     117     142 .. 0.73

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.018
                    EEE-TTT--..EEEEEEE-SSS-S---EEEET CS
  zinc-ribbons_6 16 qyhCeaCqe..dlkkealCpeCeqelevlkaC 45
                    +++C  C e  +++++ l  +C+ +l+v+k C
      CCD26673.1  9 TCRCWICLEesEYDQTWLIHKCGCNLQVHKTC 40
                    6799999776699******************* PP

  == domain 2  score: 5.0 bits;  conditional E-value: 0.0066
                     EE-SSS-S---E CS
  zinc-ribbons_6  30 alCpeCeqelev 41 
                       Cp+C+++++ 
      CCD26673.1 126 SQCPQCQKQIQL 137
                     567777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       688  (0.0383736); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.22s 00:00:00.73 Elapsed: 00:00:00.38
# Mc/sec: 3853.07
//
Query:       CCD26674.1  [L=253]
Description: hypothetical protein NDAI_0I01050 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.3e-23   80.5   1.3    7.3e-23   80.5   1.3    1.9  2  Ribosomal_S17  Ribosomal protein S17
  ------ inclusion threshold ------
      0.075   13.0   0.2       0.15   12.0   0.2    1.6  1  GhoS           Endoribonuclease GhoS


Domain annotation for each model (and alignments):
>> Ribosomal_S17  Ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   1.3   8.2e-27   7.3e-23       1      67 [.       8      75 ..       8      76 .. 0.97
   2 ?   -3.0   0.1      0.93   8.4e+03      54      62 ..     158     166 ..     157     167 .. 0.83

  Alignments for each domain:
  == domain 1  score: 80.5 bits;  conditional E-value: 8.2e-27
                   EEEEE-.-STTEEEEEEEEEEEETTTTEEEEEEEEEEEE-TTTS--TT-EEEEEEECECSSSEEEEEE CS
  Ribosomal_S17  1 GvVvsd.kmdkTvvVrverlvkhpkykkyvkrrkkylahdennsvkvGDiVrieecrPlSktkrfvvv 67
                   G Vvs+ km+kTv+Vrve++v +++++k   +rk yl+hde ++ ++GD+Vrie++rP+Sk+k f + 
     CCD26674.1  8 GLVVSQgKMQKTVKVRVETKVFNKRVNKELFHRKDYLVHDEGEISREGDMVRIESTRPISKHKFFAIA 75
                   7899999**********************************************************986 PP

  == domain 2  score: -3.0 bits;  conditional E-value: 0.93
                    EECECSSSE CS
  Ribosomal_S17  54 ecrPlSktk 62 
                    e+r+lS  k
     CCD26674.1 158 ETRKLSEIK 166
                    99****987 PP

>> GhoS  Endoribonuclease GhoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   1.7e-05      0.15      17      70 ..     130     185 ..     123     214 .. 0.87

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 1.7e-05
                 GGGHHHHHHHHHHHHHTTEESEEE-SSS-EEE-TT..SEEEE---S-HHHHHHHHH CS
        GhoS  17 ekslseinelnsvltragFsltlaDeeGkpheLgt..ntfglisalseeeieelaa 70 
                 +  ls+i+ l++vl ++g ++t  D+e + ++L++  + +g+    s++ i++l +
  CCD26674.1 130 STLLSDIKYLQKVLNNDGNESTNKDQESETRKLSEikQKYGINDDFSKDTIRQLLS 185
                 45689****************************964489************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1743  (0.0972168); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.37
# Mc/sec: 2062.28
//
Query:       CCD26675.1  [L=1081]
Description: hypothetical protein NDAI_0I01060 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   9.8e-191  634.2   0.0   2.1e-179  596.9   0.0    2.3  2  GDC-P     Glycine cleavage system P-protein


Domain annotation for each model (and alignments):
>> GDC-P  Glycine cleavage system P-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  596.9   0.0  1.2e-183  2.1e-179       1     429 [.      87     549 ..      87     550 .. 0.93
   2 !   35.0   0.0   3.9e-13   7.1e-09      44     287 ..     586     843 ..     572     852 .. 0.80

  Alignments for each domain:
  == domain 1  score: 596.9 bits;  conditional E-value: 1.2e-183
                 HHH-SS-HHHHHHHHHHHT-SSHHHHHHHHS-GGGB--S-------.............--HHHHHHHHHHHHTTB--.-EE--BTTB------HHHHH CS
       GDC-P   1 erhigpsekdqkemLetlGlkslddliekavPkeiklkkelkleap.............ksEeellaelekiasknkv.vksfiGaGyydtilPaviqr 85 
                 +rh+gp  kd+++mL+++G+++l+++i++ +P++i  + ++  +               +sE+e+l++l+++a+kn++ +k+fiG+Gyy+ti+P+viqr
  CCD26675.1  87 RRHLGPAPKDVQSMLKQMGFNDLESFIKAVIPSNILNNDTTDSPLDfdlkastsssnvgFSEQEMLKHLTNLANKNNYkIKNFIGKGYYNTIVPPVIQR 185
                 69*********************************87766655555778889*************************99******************** PP

                 HTTT-HHHHS--S-SSGGG-HHHHHHHHHHHHHHHHHHT-SEE-S-BS-HHHHHHHHHHHHHHH-SSS--EEEEETTS-HHHHHHHHHHHGGGT-EEEE CS
       GDC-P  86 nilenpewytaYtPYqaEisqGrLeallnfqtlvadltGldianasllDegtAaaEAvllaaraskkkakkvvvdkkvhpqtlevlktrakglgieive 184
                 n+le pewyt+YtPYq+EisqGrLe+llnfqt+++dltGl+ianasllDegtAaaEA+lla++ +kkk+ k++vdk+vh+qt++vl+trak+++ie++e
  CCD26675.1 186 NLLECPEWYTSYTPYQPEISQGRLESLLNFQTVISDLTGLPIANASLLDEGTAAAEAMLLAFNLTKKKKFKFIVDKNVHKQTKSVLRTRAKPFNIELIE 284
                 ************************************************************************************************999 PP

                 E-GGG--S-.........S-EEEEEEEES-TTSB---...-HHHHHHHH.......HTT-EEEEEE-TTGGGTB--HHHHT-SEEEEE-TTTT---GGG CS
       GDC-P 185 vdlteekvtd......kekevagvlvqypnteGried...lkelvekak.......kkkslvvvaadllaLtllkpPgelgaDivvGsaqrfGvPlgyG 267
                  d+ ++  +       + +++ g++vqyp+t+G+i     lk+l+e ++           l++va+dl+aLtllkpPg+lgaDiv+Gs+qrfGvP+g+G
  CCD26675.1 285 IDSVSDFENAkyiikeNGNDLIGCFVQYPDTNGSILSeekLKQLAELTHgggnvskAPSQLFIVASDLMALTLLKPPGQLGADIVLGSSQRFGVPMGFG 383
                 88655443335777767899***************764558888887762222211345789************************************* PP

                 ----EEEEE-GGGGGG--S-EEEEEEBTTS-EEEEEE-CCGSHHCCHHHCS-S--S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT. CS
       GDC-P 268 GPhagffAvkeklkRkiPGRlvGvskDaegkralrlalqtREqHirRdkAtsniCtaqaLlAnlaalyavyhGkeglkeiarrihkkteilakelkkk. 365
                 GPha+ff v +kl+RkiPGR+vGvskD+ g++alrlalqtREqHi+RdkAtsniCtaqaLlAn+aa y+vyhG+egl++ia+ri+  t++la++++++ 
  CCD26675.1 384 GPHAAFFSVIDKLNRKIPGRIVGVSKDRLGNPALRLALQTREQHIKRDKATSNICTAQALLANIAANYCVYHGPEGLQNIAKRIYGMTTVLAQHINSSk 482
                 ***********************************************************************************************9999 PP

                 .T-EE--SSBSSEEEEE--T..TTHHHHHHHHHHTT.EE-EEESTTEEEEE--TT--HHHHHHHHHH CS
       GDC-P 366 leeelkkkkffdtllievee..kaaekvlkkaekeg.lnlrkvelktvgialdEtvtkedieallkv 429
                 +e+++ ++++fdtl+i+++e  + ++k l+ka++e  +nl++ + +t++++ldE++t++d+++l+ +
  CCD26675.1 483 CEHSVINESWFDTLTIKLNEnvTNSKKFLEKALNEFsMNLFMSDSQTISLSLDEATTEDDLSNLILL 549
                 *****************9986555667******9999**************************9876 PP

  == domain 2  score: 35.0 bits;  conditional E-value: 3.9e-13
                 -----HHHHHHHHHHHHTTB--.-EE--BTTB------HHHHHHTTT-HHHHS--S-SSGGG.-HHHHHHHHHHHHHHHHHHT-SEE-S-BS-HHHHHH CS
       GDC-P  44 eapksEeellaelekiasknkv.vksfiGaGyydtilPaviqrnilenpewytaYtPYqaEi.sqGrLeallnfqtlvadltGldianasllDegtAaa 140
                 ++ +sE+++l+ l+++ +++   ++s+i  G   ++l ++++   +  p++ t+  P+q+   ++G  e + n  + ++++tG+d    sl  ++ A++
  CCD26675.1 586 NKYHSETAMLRYLHHLQTRDLSlANSMIPLGSCTMKLNSTVEMMPITWPQF-TNIHPFQPSSqTKGYQEMFTNLEKDLCNITGFDA--ISLQPNSGASG 681
                 55689***************9889*******************88888886.8899***9742678899999************95..69999999*** PP

                 HHHHHHHHH-....SSS..--EEEEETTS-HHHHHHHHHHHGGGT-EEEEE-GGG--S-.............S-EEEEEEEES-TTSB---.-HHHHHH CS
       GDC-P 141 EAvllaaras....kkk..akkvvvdkkvhpqtlevlktrakglgieivevdlteekvtd..........kekevagvlvqypnteGried.lkelvek 222
                 E   l + ++    +++  ++  ++  + h     +    a   g+++v v++ +++  d           ++e+a+v++ yp+t G   + ++e  + 
  CCD26675.1 682 EYTGLRVIKTylesQGQphRNVCLIPISAHG----TNPASAAMCGLKTVSVNCLNDGSLDlndlklkaekYKDELAAVMITYPSTYGLFGPsVQEAFDI 776
                 9887744333010022211233333333332....233456667777777777777777777777877767899**************99878999*** PP

                 HHHTT-EEEE.EE-TTGGGTB--HHHHT-SEE.EEE-TTTT---GGG----EEEEE-GGGGGG--S- CS
       GDC-P 223 akkkkslvvv.aadllaLtllkpPgelgaDiv.vGsaqrfGvPlgyGGPhagffAvkeklkRkiPGR 287
                 ++++   v +  a++ a + l++Pg lgaD+  +   + f +P g GGP  + + v+++lk  +PG 
  CCD26675.1 777 VHENGGQVYLdGANMNAQVGLTSPGFLGADVChLNLHKTFAIPHGGGGPAGAPICVRSHLKPFLPGH 843
                 ***99988873577788889***********84677889***********************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1081 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       668  (0.0372581); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.40
# Mc/sec: 8061.42
//
Query:       CCD26676.1  [L=480]
Description: hypothetical protein NDAI_0I01070 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-23   84.0   0.0      2e-23   83.1   0.0    1.4  1  Pkinase         Protein kinase domain
    3.3e-14   52.8   0.0    4.9e-14   52.2   0.0    1.3  1  Pkinase_Tyr     Protein tyrosine kinase
    5.4e-08   32.0   0.0    8.6e-08   31.4   0.0    1.3  1  Pkinase_fungal  Fungal protein kinase
  ------ inclusion threshold ------
      0.012   15.5   0.6      0.072   13.0   0.0    2.2  2  APH             Phosphotransferase enzyme family


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   4.4e-27     2e-23       2     212 ..      10     227 ..       9     267 .. 0.84

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 4.4e-27
                 EEEEEEEEESSEEEEEEEETTTTEEEEEEEEECHCHCHHHHHHHHHHHHHHHHHSCTTB--EEEEEEESSEEE.EEEE--TTEBHHHHHH.HHSS--HH CS
     Pkinase   2 ekleklGeGsfGkVykaveketgkivAvKkikkekakkkkekkvlrEikilkklkhpnivrlyevfeekdely.lvleyveggeladlle.rkgslsee 98 
                 +  +k+G+GsfG +y +++  +g++v +K  + +++  +    +  E ++ k l+    + ++++f ++ e+  +v++++   +l+dl +  ++++s +
  CCD26676.1  10 RIGRKIGSGSFGDIYHGTNLISGEEVGIKLESIRSRHPQ----LDYESRVYKYLSGGVGIPFIRWFGREGEYNaMVMDLLGP-SLEDLFNyCHRKFSFK 103
                 6789************************98777766664....559*********9999999999988666555*****985.588877765678999* PP

                 HHHHHHHHHHHHHHHHHHTTEE-SS-SGGGEEEETTTE....EEE-SGTTSEESSSSCS........BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHH CS
     Pkinase  99 eakkiakqilegleylHskgiiHrDlKpeNiLidekge....lKitDFGlakelesssk........ltsfvgtseYlAPEvlkeneyskkvDvWslGv 185
                 ++  +a q++  ++y+H +++iHrD+Kp+N+L+ + g     + ++DFGl+k+++  ++         +s +gt +Y +     + e s+  D+ slG 
  CCD26676.1 104 TVIMLALQMICRVQYIHGRSFIHRDIKPDNFLMGT-GRrgstVHVIDFGLSKKYRDFNThrhipyreNKSLTGTARYASVNTHLGIEQSRRDDLESLGY 201
                 *********************************93.333669************99888899*****************999989999*********** PP

                 HHHHHHHSS-STTTSSHHHHHHHHHHT CS
     Pkinase 186 ilyelltgkppfsgekgkekvekeldq 212
                 +l+ +  g+ p++g k ++ +++++d+
  CCD26676.1 202 MLVYFCKGSLPWQGLKATT-KKQKYDR 227
                 *************776665.4444444 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   1.1e-17   4.9e-14       2     256 ..      10     270 ..       9     273 .. 0.80

  Alignments for each domain:
  == domain 1  score: 52.2 bits;  conditional E-value: 1.1e-17
                  EEEEEEEEESSEEEEEEEEETTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHTCTT CS
  Pkinase_Tyr   2 elgkklGeGafGkVvegtlkgekekkevkVavKtlkeeateeekeelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkkeke 98 
                  ++g+k+G+G+fG++++gt       + ++V +K  + +++   + +l  e ++ k l+    + ++ +   ++e   +v++++   +L++  +   ++
   CCD26676.1  10 RIGRKIGSGSFGDIYHGTNL----ISGEEVGIKLESIRSR---HPQLDYESRVYKYLSGGVGIPFIRWFGrEGEYNAMVMDLLGP-SLEDLFNYC-HR 98 
                  6799**************99....7788999998744444...568889999999998777777777777477779*****9854.566666555.66 PP

                  TSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEEE...TTEEEE-STTTHEETTTSSEE.....EETTSSTSGGGGS-HHHHHHSEEEHHHHH CS
  Pkinase_Tyr  99 kltlkdllsfalqvAkGmeyLeskklvHrdlaarNvLlse...nkvvkisDfGLardiekddey.....vkkeeaklpvkWmapEslkekkftsksDv 188
                  k+++k+++ +alq+ + ++y++ ++++Hrd+   N L+ +   +++v + DfGL+++  + ++      +++++ +   ++ ++ +    + + + D 
   CCD26676.1  99 KFSFKTVIMLALQMICRVQYIHGRSFIHRDIKPDNFLMGTgrrGSTVHVIDFGLSKKYRDFNTHrhipyRENKSLTGTARYASVNTHLGIEQSRRDDL 196
                  7*************************************9755577**********99844333233444888888999******************** PP

                  HHHHHHHHHHHTTSSGTTTTS...HHHHHHHHH.HTTEES-BBTTS...BHHHHHHHHHHT-SSGGGS--HHHHH CS
  Pkinase_Tyr 189 WsfGvllwEiftlgespypgl...kneevlekl.kegkrlekpekc...peelyelmkkcweedpeeRptfselv 256
                   s G +l   ++ g+ p++gl   ++++ ++++ +++  ++  + c   p e+++ m+ c + + eeRp++  l 
   CCD26676.1 197 ESLGYMLVYFCK-GSLPWQGLkatTKKQKYDRIlEKKLCISVDTLCaglPIEFADYMNYCRNLKFEERPDYLYLA 270
                  ****99997666.****999833244556666635555555555553337899****************987665 PP

>> Pkinase_fungal  Fungal protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.9e-11   8.6e-08     327     408 .]     123     207 ..     105     207 .. 0.91

  Alignments for each domain:
  == domain 1  score: 31.4 bits;  conditional E-value: 1.9e-11
  Pkinase_fungal 327 giLHrDiSenNilitdskkegerkglLiDLDlakelsddsses.....garertGTleFmaievlkgeeHsyrhDLESffyvllwic 408
                      ++HrDi  +N l+   +  ++ +  +iD+ l k++ d ++++     +++  tGT+ + +++   g+e s r+DLES+ y l++ c
      CCD26676.1 123 SFIHRDIKPDNFLMG--TGRRGSTVHVIDFGLSKKYRDFNTHRhipyrENKSLTGTARYASVNTHLGIEQSRRDDLESLGYMLVYFC 207
                     679************..78899***************999998666665599*********************************98 PP

>> APH  Phosphotransferase enzyme family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.6e-05     0.072     166     196 ..     122     153 ..     117     156 .. 0.81
   2 ?   -0.1   0.3      0.16   7.1e+02      92     120 ..     375     403 ..     348     464 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.0 bits;  conditional E-value: 1.6e-05
                 EEEE-SS-SGGGEEEC.....TTEEEEE---TT- CS
         APH 166 tvllHgDlhpgNllvd...pddgrvtGviDfeda 196
                 ++++H+D++p+N+l+     + +    viDf+++
  CCD26676.1 122 RSFIHRDIKPDNFLMGtgrRGSTVH--VIDFGLS 153
                 589*************865444444..9***986 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.16
                 HHHHHHHHHHHCCHHCH.-STTTB-SHHC CS
         APH  92 pellealgeflaalhqvdpaalpladfla 120
                 pell+a+   l al qv+p++ p+++ l 
  CCD26676.1 375 PELLQAIDKGLDALKQVPPQQQPQQGTLQ 403
                 55555555666677777766666665553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       597  (0.033298); expected 358.6 (0.02)
Passed bias filter:                      353  (0.0196888); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.38
# Mc/sec: 3768.61
//
Query:       CCD26677.1  [L=207]
Description: hypothetical protein NDAI_0I01080 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-22   78.2   6.8    4.5e-22   78.2   6.8    1.8  2  Ribosomal_L12    Ribosomal protein L7/L12 C-terminal domain
    6.3e-09   35.4   5.0    6.3e-09   35.4   5.0    3.0  2  Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
  ------ inclusion threshold ------
      0.015   15.5   1.0        3.3    8.0   0.2    2.6  3  BLYB             Borrelia hemolysin accessory protein
      0.068   13.6   2.3        5.1    7.6   0.1    2.9  3  CSTF2_hinge      Hinge domain of cleavage stimulation factor 
       0.16   12.1   0.9         14    5.8   0.1    2.4  2  ENT              ENT domain


Domain annotation for each model (and alignments):
>> Ribosomal_L12  Ribosomal protein L7/L12 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.74   2.6e+03      20      39 ..      70      89 ..      64      93 .. 0.66
   2 !   78.2   6.8   1.3e-25   4.5e-22       1      66 [.     140     206 ..     140     207 .] 0.98

  Alignments for each domain:
  == domain 1  score: -1.2 bits;  conditional E-value: 0.74
                   HHHH---HHHHHHHHTTTTS CS
  Ribosomal_L12 20 reitglgLkeaKdlVeaapk 39
                    +i  l L e  +l+ ++ +
     CCD26677.1 70 DSISKLTLLETSQLIKELKT 89
                   56677777777777766555 PP

  == domain 2  score: 78.2 bits;  conditional E-value: 1.3e-25
                    EEEEEEE-TT-.HHHHHHHHHHHH---HHHHHHHHTTTTSTEEEEE-HHHHHHHHHHHHCTT-EEEE CS
  Ribosomal_L12   1 fdViLksagak.KiaVIKaVreitglgLkeaKdlVeaapkvvkegvskeeAeeikkkLeeaGAevel 66 
                    f+V L+s+++k K ++IK+V+++ +l+L+eaK++Ve+ pkv+ke+v ke+A++ik++Le  GA+v+l
     CCD26677.1 140 FTVKLESFDTKsKAKIIKEVKNLLSLSLVEAKKFVESSPKVLKENVGKEDADKIKATLEGLGAKVSL 206
                    9********999*****************************************************98 PP

>> Ribosomal_L12_N  Ribosomal protein L7/L12 dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   5.0   1.8e-12   6.3e-09       1      33 [.      64      96 ..      64     132 .. 0.88
   2 ?    2.1   0.5     0.044   1.6e+02       4      22 ..     154     175 ..     151     176 .. 0.65

  Alignments for each domain:
  == domain 1  score: 35.4 bits;  conditional E-value: 1.8e-12
                     HHHHHHHHHHTSBHHHHHHHHHHHHHHTTHHHH CS
  Ribosomal_L12_N  1 kieeiieaikeltvLElseLvkalEekFGVsAA 33
                     ki+ i+++i++lt+LE+s+L+k+l+++++++++
       CCD26677.1 64 KITSIVDSISKLTLLETSQLIKELKTTLNIPDI 96
                     7999***************************97 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.044
                      HHHHHHHT...SBHHHHHHHHH CS
  Ribosomal_L12_N   4 eiieaike...ltvLElseLvk 22 
                      +ii+++k+   l++ E++ +v+
       CCD26677.1 154 KIIKEVKNllsLSLVEAKKFVE 175
                      5666655522279999999986 PP

>> BLYB  Borrelia hemolysin accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0    0.0073        26      48      95 ..      39      89 ..      33      94 .. 0.81
   2 ?    8.0   0.2   0.00091       3.3      45      72 ..     137     164 ..     134     170 .. 0.91
   3 ?   -1.6   0.0      0.83     3e+03      97     117 ..     170     190 ..     166     192 .. 0.79

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.0073
        BLYB 48 YtkslkklesaeskkivkeledilekiaklidainsD...knkkiiedLkf 95
                Y +s+++++s  s+  v++  ++  ki+ ++d i++    +  ++i++Lk 
  CCD26677.1 39 YLRSFNRFNSTSSPTAVEDKLPVDPKITSIVDSISKLtllETSQLIKELKT 89
                889999999999*99999999***********9997534455667777765 PP

  == domain 2  score: 8.0 bits;  conditional E-value: 0.00091
        BLYB  45 kkiYtkslkklesaeskkivkeledile 72 
                 + i+t +l++++++   ki+ke++++l+
  CCD26677.1 137 QSIFTVKLESFDTKSKAKIIKEVKNLLS 164
                 689**********************997 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.83
        BLYB  97 rnklikikikllkkeldkirs 117
                  +k+++   k+lk+++ k+ +
  CCD26677.1 170 AKKFVESSPKVLKENVGKEDA 190
                 567788899999999999865 PP

>> CSTF2_hinge  Hinge domain of cleavage stimulation factor subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.2     0.013        48      17      41 ..      64      91 ..      51      98 .. 0.66
   2 ?    7.6   0.1    0.0014       5.1      18      57 ..     140     179 ..     126     182 .. 0.84
   3 ?   -1.0   0.0      0.68   2.4e+03      11      25 ..     186     200 ..     181     203 .. 0.81

  Alignments for each domain:
  == domain 1  score: 4.5 bits;  conditional E-value: 0.013
  CSTF2_hinge 17 aIsktLsslppeqlle...llsqlKala 41
                 +I+++++s+++  lle   l+++lK+ +
   CCD26677.1 64 KITSIVDSISKLTLLEtsqLIKELKTTL 91
                 5666666666666654333899999866 PP

  == domain 2  score: 7.6 bits;  conditional E-value: 0.0014
  CSTF2_hinge  18 IsktLsslppeqllellsqlKalaqqnpsqarelLkqnpq 57 
                   +  L+s++++   ++++++K+l++ +  +a+++ +++p+
   CCD26677.1 140 FTVKLESFDTKSKAKIIKEVKNLLSLSLVEAKKFVESSPK 179
                  46679999**************************999997 PP

  == domain 3  score: -1.0 bits;  conditional E-value: 0.68
  CSTF2_hinge  11 glsapdaIsktLssl 25 
                  g + +d+I+ tL+ l
   CCD26677.1 186 GKEDADKIKATLEGL 200
                  67899******9876 PP

>> ENT  ENT domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0092        33      29      46 ..      80      97 ..      60     100 .. 0.86
   2 ?    5.8   0.1     0.004        14      26      51 ..     149     174 ..     135     177 .. 0.83

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0092
         ENT 29 kkkllteLrkeLsIster 46
                  +l++eL+++L+I + +
  CCD26677.1 80 TSQLIKELKTTLNIPDIT 97
                579***********8865 PP

  == domain 2  score: 5.8 bits;  conditional E-value: 0.004
         ENT  26 seekkkllteLrkeLsIsterHrael 51 
                 +++k k+++e +++Ls s  + ++++
  CCD26677.1 149 TKSKAKIIKEVKNLLSLSLVEAKKFV 174
                 589*************9988777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       887  (0.0494729); expected 358.6 (0.02)
Passed bias filter:                      472  (0.0263261); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.23s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 1607.01
//
Query:       CCD26678.1  [L=122]
Description: hypothetical protein NDAI_0I01090 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-17   63.3   4.4    1.4e-17   63.3   4.4    2.6  3  RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
    5.2e-13   48.6   2.3    5.2e-13   48.6   2.3    3.1  3  TFIIS_C         Transcription factor S-II (TFIIS)
     0.0083   16.2   4.4        1.2    9.3   0.2    2.4  2  DUF2387         Probable metal-binding protein (DUF2387)
  ------ inclusion threshold ------
      0.016   15.6   4.3       0.21   12.0   0.5    2.3  2  zf-UBP          Zn-finger in ubiquitin-hydrolases and other p
      0.049   13.7   7.4        1.5    8.9   0.4    2.6  2  DZR             Double zinc ribbon
      0.084   12.9  11.2       0.85    9.7   3.1    2.7  3  Zn_Tnp_IS1595   Transposase zinc-ribbon domain
       0.23   11.2   8.2       0.87    9.4   0.7    2.5  2  zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal
       0.74    9.9   4.7         27    4.9   0.2    3.3  4  Rubredoxin      Rubredoxin
        1.2    9.1  11.9       0.89    9.5   1.1    3.3  3  Nudix_N_2       Nudix N-terminal


Domain annotation for each model (and alignments):
>> RNA_POL_M_15KD  RNA polymerases M/15 Kd subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   4.4     7e-21   1.4e-17       1      35 [.       4      40 ..       4      41 .. 0.96
   2 ?   -0.7   0.2      0.68   1.4e+03      24      27 ..      75      78 ..      68      80 .. 0.63
   3 ?   -0.0   0.0      0.42   8.4e+02      22      35 ..     101     114 ..      91     118 .. 0.66

  Alignments for each domain:
  == domain 1  score: 63.3 bits;  conditional E-value: 7e-21
                    EEBESTTTSBEEEEECSCCCE..EEESSSS-EEESSC CS
  RNA_POL_M_15KD  1 lkFCpkCgNlLlpkedkegkn..feCrqCgYeepadq 35
                    ++FC++C+N+L+p+edke+++  feCr+C+Y+e+a++
      CCD26678.1  4 FRFCRDCNNMLYPREDKENNRllFECRTCSYVEEAGS 40
                    69********************************987 PP

  == domain 2  score: -0.7 bits;  conditional E-value: 0.68
                    ESSS CS
  RNA_POL_M_15KD 24 CrqC 27
                    C +C
      CCD26678.1 75 CPNC 78
                    4444 PP

  == domain 3  score: -0.0 bits;  conditional E-value: 0.42
                     EEESSSS-EEESSC CS
  RNA_POL_M_15KD  22 feCrqCgYeepadq 35 
                     f C  C+ ++ +dq
      CCD26678.1 101 FVCLHCSHIFTSDQ 114
                     66888877666555 PP

>> TFIIS_C  Transcription factor S-II (TFIIS)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.8     0.011        23      25      36 ..       1      12 [.       1      14 [. 0.93
   2 ?    2.7   0.2      0.06   1.2e+02      23      36 ..      21      34 ..      17      36 .. 0.76
   3 !   48.6   2.3   2.6e-16   5.2e-13       2      39 .]      74     111 ..      73     111 .. 0.96

  Alignments for each domain:
  == domain 1  score: 5.0 bits;  conditional E-value: 0.011
     TFIIS_C 25 mtvfykCtkCgh 36
                mt+f  C +C++
  CCD26678.1  1 MTTFRFCRDCNN 12
                9*********97 PP

  == domain 2  score: 2.7 bits;  conditional E-value: 0.06
     TFIIS_C 23 EpmtvfykCtkCgh 36
                E   + ++C +C +
  CCD26678.1 21 ENNRLLFECRTCSY 34
                56678899999976 PP

  == domain 3  score: 48.6 bits;  conditional E-value: 2.6e-16
     TFIIS_C   2 kCpkCgsreayffqlQtRsaDEpmtvfykCtkCghrWr 39 
                 +Cp+C+ r+ +ffq Q+R+ D++m++f++C+ C h ++
  CCD26678.1  74 ECPNCHTRDNVFFQSQQRRKDTSMVLFFVCLHCSHIFT 111
                 7**********************************885 PP

>> DUF2387  Probable metal-binding protein (DUF2387)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.2   0.00062       1.2      11      48 ..       7      43 ..       5      62 .. 0.75
   2 !    8.3   0.7    0.0013       2.5      11      45 ..      75     115 ..      73     121 .. 0.63

  Alignments for each domain:
  == domain 1  score: 9.3 bits;  conditional E-value: 0.00062
     DUF2387 11 CPrCsemDkirmweedeveyrECvsCgftdelsekgqs 48
                C  C++m   r  +e+++   EC  C++++e  ++   
  CCD26678.1  7 CRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSP-LV 43
                667777777777788899999*********98766.44 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 0.0013
     DUF2387  11 CPrCsemDkirmweede......veyrECvsCgftdelsek 45 
                 CP C++ D++   +++       v +  C +C+++ + ++k
  CCD26678.1  75 CPNCHTRDNVFFQSQQRrkdtsmVLFFVCLHCSHIFTSDQK 115
                 ********886655544221133345679999987655555 PP

>> zf-UBP  Zn-finger in ubiquitin-hydrolases and other protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.3     0.014        27       1      20 [.       7      35 ..       7      48 .. 0.80
   2 ?   12.0   0.5    0.0001      0.21       1      28 [.      75     117 ..      74     120 .. 0.68

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.014
                -TTTH........--..SSEEEETTT--E CS
      zf-UBP  1 CseCn........se.nknlWlCLkCghv 20
                C +Cn        +e n+ l+ C +C +v
  CCD26678.1  7 CRDCNnmlypredKEnNRLLFECRTCSYV 35
                9999988888876333455999****998 PP

  == domain 2  score: 12.0 bits;  conditional E-value: 0.0001
                 -TTTH--.SS................EEEETTT--EEE-TTTT- CS
      zf-UBP   1 CseCnsenkn................lWlCLkCghvgCgrksng 28 
                 C +C++  +n                 ++CL+C h++  +++n+
  CCD26678.1  75 CPNCHTR-DNvffqsqqrrkdtsmvlFFVCLHCSHIFTSDQKNK 117
                 5666633.334555555566677776899********9988774 PP

>> DZR  Double zinc ribbon
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.4   0.00078       1.5      12      37 ..       4      35 ..       2      42 .. 0.81
   2 ?    7.4   1.6    0.0022       4.3       8      41 ..      68     113 ..      60     116 .. 0.72

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00078
         DZR 12 arfCseCgtklkavaa......edrCpsCgek 37
                 rfC +C++ l + ++         C  C++ 
  CCD26678.1  4 FRFCRDCNNMLYPREDkennrlLFECRTCSYV 35
                69********9866658999998889999875 PP

  == domain 2  score: 7.4 bits;  conditional E-value: 0.0022
         DZR   8 lppdarfCseCgtk....lkavaa............edrCpsCgekvdpe 41 
                 lp ++r C++C t+         +              +C +C++  +++
  CCD26678.1  68 LPRSDRECPNCHTRdnvfF----QsqqrrkdtsmvlFFVCLHCSHIFTSD 113
                 6788899999999965542....233457788888888888888876655 PP

>> Zn_Tnp_IS1595  Transposase zinc-ribbon domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   1.2    0.0027       5.3      20      45 ..       5      34 ..       2      35 .. 0.75
   2 ?    9.7   3.1   0.00043      0.85      19      45 ..      73     108 ..      69     109 .. 0.76
   3 ?    1.5   0.2      0.15   3.1e+02      19      25 ..     101     107 ..      91     115 .. 0.76

  Alignments for each domain:
  == domain 1  score: 7.1 bits;  conditional E-value: 0.0027
  Zn_Tnp_IS1595 20 v.CPhCgsr.kayrikt..rglfqCkeCrk 45
                   + C  C ++  +++ k   r lf+C+ C++
     CCD26678.1  5 RfCRDCNNMlYPREDKEnnRLLFECRTCSY 34
                   44999999965555444789********87 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00043
  Zn_Tnp_IS1595  19 fvCPhCgsrkayrikt.........rglfqCkeCrk 45 
                    + CP+C+ r   ++++            f C +C++
     CCD26678.1  73 RECPNCHTRDNVFFQSqqrrkdtsmVLFFVCLHCSH 108
                    78*******555555548888888888889999976 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.15
  Zn_Tnp_IS1595  19 fvCPhCg 25 
                    fvC hC 
     CCD26678.1 101 FVCLHCS 107
                    6777775 PP

>> zinc_ribbon_10  Predicted integral membrane zinc-ribbon metal-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   1.5     0.007        14      28      52 ..       7      34 ..       5      36 .. 0.67
   2 ?    9.4   0.7   0.00044      0.87      25      52 ..      75     108 ..      62     110 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.5 bits;  conditional E-value: 0.007
  zinc_ribbon_10 28 ChshnGlap...keeleevkyrCpkCga 52
                    C+  n++      +e++++ + C  C  
      CCD26678.1  7 CRDCNNMLYpreDKENNRLLFECRTCSY 34
                    55556654445566666779******75 PP

  == domain 2  score: 9.4 bits;  conditional E-value: 0.00044
  zinc_ribbon_10  25 CskChshnGlap.....keeleev.kyrCpkCga 52 
                     C++Ch+  ++       +++ + v  ++C +C +
      CCD26678.1  75 CPNCHTRDNVFFqsqqrRKDTSMVlFFVCLHCSH 108
                     9****999987666666556666668******88 PP

>> Rubredoxin  Rubredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       3.9   7.8e+03       4       8 ..       7      11 ..       6      21 .. 0.68
   2 ?    4.4   0.0     0.019        39       2      10 ..      27      35 ..      26      42 .. 0.80
   3 ?    4.9   0.2     0.014        27      34      47 .]      72      85 ..      66      85 .. 0.77
   4 ?    1.0   0.0      0.23   4.6e+02       2      19 ..     101     118 ..     100     122 .] 0.75

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 3.9
                ETTT- CS
  Rubredoxin  4 CkvCg 8 
                C+ C+
  CCD26678.1  7 CRDCN 11
                67775 PP

  == domain 2  score: 4.4 bits;  conditional E-value: 0.019
                EEETTT-BE CS
  Rubredoxin  2 yeCkvCgyv 10
                +eC++C yv
  CCD26678.1 27 FECRTCSYV 35
                79****997 PP

  == domain 3  score: 4.9 bits;  conditional E-value: 0.014
                T-BBTTTB-BGGGE CS
  Rubredoxin 34 dWvCPdCgvekeqF 47
                d +CP+C  + + F
  CCD26678.1 72 DRECPNCHTRDNVF 85
                568****9887766 PP

  == domain 4  score: 1.0 bits;  conditional E-value: 0.23
                 EEETTT-BEEETTTBBGG CS
  Rubredoxin   2 yeCkvCgyvYdpakGdpd 19 
                 + C  C +++  ++ +++
  CCD26678.1 101 FVCLHCSHIFTSDQKNKR 118
                 679999999987776665 PP

>> Nudix_N_2  Nudix N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   1.1   0.00044      0.89       1      31 [.       5      35 ..       5      36 .. 0.95
   2 ?    1.5   0.1      0.15   2.9e+02      25      30 ..      75      80 ..      65      81 .. 0.86
   3 ?    4.0   0.7     0.025        49      23      32 ..     101     110 ..     101     110 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00044
                -B-TTT--B-EEE--TT-SS-EEEETTTTEE CS
   Nudix_N_2  1 kFCsqCGtpvelripdgDnreRlvCpaCgti 31
                +FC+ C + +  r  ++ nr  + C  C+++
  CCD26678.1  5 RFCRDCNNMLYPREDKENNRLLFECRTCSYV 35
                8*************99999999*******98 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.15
                ETTTTE CS
   Nudix_N_2 25 CpaCgt 30
                Cp+C+t
  CCD26678.1 75 CPNCHT 80
                888886 PP

  == domain 3  score: 4.0 bits;  conditional E-value: 0.025
                 EEETTTTEEE CS
   Nudix_N_2  23 lvCpaCgtih 32 
                 +vC +C++i+
  CCD26678.1 101 FVCLHCSHIF 110
                 59******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       750  (0.0418317); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.43
# Mc/sec: 859.04
//
Query:       CCD26679.1  [L=877]
Description: hypothetical protein NDAI_0I01100 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-44  150.7   0.6    1.8e-44  150.7   0.6    4.0  4  AFT          Transcription factor AFT
  ------ inclusion threshold ------
      0.055   13.5   0.7         11    6.1   0.0    3.1  3  DBD_Tnp_Mut  MuDR family transposase


Domain annotation for each model (and alignments):
>> AFT  Transcription factor AFT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.18   1.6e+03      33      60 ..       2      52 ..       1      88 [. 0.52
   2 !  150.7   0.6     2e-48   1.8e-44       1     111 []     122     231 ..     122     231 .. 0.91
   3 ?   -3.1   2.6       1.1     1e+04      52      81 ..     314     343 ..     289     398 .. 0.61
   4 ?   -2.4   0.3       0.7   6.2e+03      42      46 ..     806     810 ..     766     842 .. 0.54

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.18
                EEEE---XXXXXXXX..................................... CS
         AFT 33 vfkCkaakkkrkasekskeeekaedes........................t 60
                v++ k++k+k+++++++ ++  + +++                         
  CCD26679.1  2 VYRNKNEKHKNNNEDTN-NNMDTYTGNsmgeengsfpiltnnrpgsplsssP 52
                66777777666655433.3333333332444445555555555555544440 PP

  == domain 2  score: 150.7 bits;  conditional E-value: 2e-48
                 -SSGGGHHHHHHHHHGGGT--EEEEEEETTEEEEEE---XXXXXXXX........................XXXXXXXXXX----EEEEEEETTTTEEE CS
         AFT   1 fkdksdikpWLqkifypqGieiviersDslkivfkCkaakkkrkasekskeeekaedestvseeetsskkkkkkravsrynsCPfrvratyslkrkkWs 99 
                 f dk dikpWLqkifypqGieiviersD++k+vfkCka+kk r++ ++ k + +++++ ++ +      kkk+kr+vsr+n CPfr+ratyslkrkkW+
  CCD26679.1 122 FIDKADIKPWLQKIFYPQGIEIVIERSDNTKVVFKCKANKKGRTSLKDLKLK-SEQNQIAILPPPPPPPKKKNKRSVSRFNICPFRIRATYSLKRKKWN 219
                 789*****************************************99876555.5556666777778888999*************************** PP

                 EEEEE---SS-- CS
         AFT 100 ivvvnnehshel 111
                 ivv+nn+hsh+l
  CCD26679.1 220 IVVMNNTHSHPL 231
                 **********97 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 1.1
                 ....................XXXXXXXXXX CS
         AFT  52 eekaedestvseeetsskkkkkkravsryn 81 
                 ++++++ +  ++ ++ ++k+ k++  ++++
  CCD26679.1 314 KSSNSNLNIQKPRTKLNDKRTKENLLKKST 343
                 222222222233333334444444433333 PP

  == domain 4  score: -2.4 bits;  conditional E-value: 0.7
                 XXXXX CS
         AFT  42 krkas 46 
                 +++++
  CCD26679.1 806 NNNNN 810
                 11111 PP

>> DBD_Tnp_Mut  MuDR family transposase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0    0.0012        11      10      48 ..     122     160 ..     120     167 .. 0.90
   2 ?    4.1   0.1    0.0051        45      50      67 .]     203     220 ..     198     220 .. 0.89
   3 ?   -2.1   0.0      0.44   3.9e+03      17      42 ..     713     738 ..     703     739 .. 0.70

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0012
  DBD_Tnp_Mut  10 FksleelrkalkkyaIahhrefrvvksdksrytvrCeke 48 
                  F + ++++ +l+k    +  e+ ++ sd+++++ +C+++
   CCD26679.1 122 FIDKADIKPWLQKIFYPQGIEIVIERSDNTKVVFKCKAN 160
                  77889999*******9********************954 PP

  == domain 2  score: 4.1 bits;  conditional E-value: 0.0051
  DBD_Tnp_Mut  50 CpWrvhaskrsekklfei 67 
                  Cp+r++a+ + + k ++i
   CCD26679.1 203 CPFRIRATYSLKRKKWNI 220
                  ********9999999987 PP

  == domain 3  score: -2.1 bits;  conditional E-value: 0.44
  DBD_Tnp_Mut  17 rkalkkyaIahhrefrvvksdksryt 42 
                   +  ++  I++ +++ +++++++  t
   CCD26679.1 713 TQCKNNQFIDQNQHIVINNNNNNSMT 738
                  55556667999999999999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1682  (0.0938145); expected 358.6 (0.02)
Passed bias filter:                      230  (0.0128284); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.77u 0.30s 00:00:01.07 Elapsed: 00:00:00.44
# Mc/sec: 5990.67
//
Query:       CCD26680.1  [L=905]
Description: hypothetical protein NDAI_0I01110 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.3e-29  102.6   2.9    6.5e-29  100.4   2.9    2.3  1  HSF_DNA-bind  HSF-type DNA-binding


Domain annotation for each model (and alignments):
>> HSF_DNA-bind  HSF-type DNA-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   2.9   3.6e-33   6.5e-29       1      96 []     266     366 ..     266     366 .. 0.93

  Alignments for each domain:
  == domain 1  score: 100.4 bits;  conditional E-value: 3.6e-33
                   HHHHHHHHHCT...TTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSB..TTB--TTSEEEEESS--XXXXXXXXX CS
  HSF_DNA-bind   1 FlkkLyklled...eelisWsedgksfvvkdkeefakevlpkyfkhsnfssFvrqLnlYgFrkvkrkee..kkkkkskvweFshenFkrgkpelLkk 92 
                   F++k++++++d   + li+Ws+dg+sf+v+++e+f +evlpkyfkhsnf+sFvrqLn+Yg++kv++ ++    ++ +++w+F++++F +++++lL +
    CCD26680.1 266 FVNKVWSMINDpvnKGLINWSDDGRSFIVQNRENFVHEVLPKYFKHSNFASFVRQLNMYGWHKVQDAKSnsILTTADDRWQFENKFFIKDREDLLIN 362
                   9********99888999**********************************************9987775544566789****************** PP

                   XXXX CS
  HSF_DNA-bind  93 ikrk 96 
                   i r+
    CCD26680.1 363 IVRQ 366
                   *985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (905 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1965  (0.109599); expected 358.6 (0.02)
Passed bias filter:                      276  (0.0153941); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                        13  (0.000725082); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.88u 0.29s 00:00:01.17 Elapsed: 00:00:00.46
# Mc/sec: 5971.21
//
Query:       CCD26681.1  [L=369]
Description: hypothetical protein NDAI_0I01120 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-35  121.9  16.9    1.5e-33  116.6  16.9    2.5  1  MPS2       Monopolar spindle protein 2
  ------ inclusion threshold ------
      0.024   14.8   2.2      0.024   14.8   2.2    2.4  2  Fib_alpha  Fibrinogen alpha/beta chain family


Domain annotation for each model (and alignments):
>> MPS2  Monopolar spindle protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.6  16.9   1.6e-37   1.5e-33       1     353 [.      17     340 ..      17     365 .. 0.82

  Alignments for each domain:
  == domain 1  score: 116.6 bits;  conditional E-value: 1.6e-37
        MPS2   1 lelvWlqvDkkaqdFiYakdlPklieriEeilkrgklqkktdyelrlpllselgkdllrtFakekeffkiykeeFkdlfdkLvgksfkevvekifedvD 99 
                 ++ +W+  D k+q+Fi+a +l +l e     +++ k          +  ls  + +l+++F+++ + +ki k++ +++++kLv+ ++ ++++ +     
  CCD26681.1  17 FNEIWNSCDIKNQGFIFADELTNLFE-----FNKDKF---------IRPLSTHESNLIQQFSSQDPTYKITKNDVNNVLKKLVNFTIFQMLKPTTSVGP 101
                 6789****************999887.....444433.........33389999******************************999999998877777 PP

        MPS2 100 gieaekisslelkeevkrlvvlssknsekdslstprkkilldllkkqesPeklrrsnrklkaLevrveslkdELeakdevlrekeRelleLkkrlseyk 198
                  ie+ k    + +++          +++++ + +p +        +++sP+k      k  +L + +++l + L  kd+++ ek+  + +Lk+++++yk
  CCD26681.1 102 PIENGKEPIGKNDAN---------TKDKQNIIVSPSNT------SNNNSPKKK-----KNPNLIAEINNLTRQLGIKDNIISEKQLLIDDLKENVETYK 180
                 777665444444444.........45778888888887......789999988.....6678999********************************** PP

        MPS2 199 ekYellqrefslykarrveksqns..........lktaikheviisElkrklqeqteiisilkeqiqreeGa...sqskrkrlhddgigstknlilalp 284
                  k+++lq+ef +yk+   +k                +  k+++++sE+kr++qeq++ii+ l+e i+ ++     ++     + ++      ++i++l+
  CCD26681.1 181 RKFQFLQKEFLFYKENVGKKYSSNysqyslsehdGIKDPKQDFLLSEFKRQIQEQKSIIQRLQERIELKKPFnipTNIDNSIISNNERKKHSGIISSLS 279
                 **************975554333356888985553334479****************************988665445556777888788889999887 PP

        MPS2 285 knlvlkaiiaailvfllfillirsliavrglvgkedtasltsklqlsWWEnnsllsklvWfFrDlfdtd 353
                   l       ++l++l+f l +  l  +  l+ ++d as+    +lsWWE+++ ls l+W  +D+ +  
  CCD26681.1 280 NFLF-----PYLLPILTFSLSVIFLV-IFYLFNSKDNASIE--WELSWWERSNWLSSLGWSLKDMLSIF 340
                 5544.....599**********9998.8999********99..*********************98863 PP

>> Fib_alpha  Fibrinogen alpha/beta chain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   2.2   2.7e-06     0.024      26     124 ..      92     189 ..      90     196 .. 0.87
   2 ?    2.0   1.0     0.025   2.2e+02      91     112 ..     226     247 ..     216     252 .. 0.78

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 2.7e-06
                 CCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH.HHHHHHHHHHHHHHHHHHHHHH CS
   Fib_alpha  26 llkyekdvkkdlekleneleeisnstkeaeelvkeikdslrekqkskkdndnvikksskeleeeilrlketidaqe.snirvLqnvlesneqkiqkLeq 123
                 +lk  ++v   +e+ ++ + ++  +tk+ ++++++ +++ +++  +kk+n n+i ++++  +  +l +k++i+++    i  L++++e+ ++k q L++
  CCD26681.1  92 MLKPTTSVGPPIENGKEPIGKNDANTKDKQNIIVSPSNTSNNNSPKKKKNPNLIAEINNLTR--QLGIKDNIISEKqLLIDDLKENVETYKRKFQFLQK 188
                 6667777888888888999999**********************************987655..8888888888885789***************9987 PP

                 H CS
   Fib_alpha 124 d 124
                 +
  CCD26681.1 189 E 189
                 6 PP

  == domain 2  score: 2.0 bits;  conditional E-value: 0.025
                 CHHHHHHHCCHHHHHHHHHHHH CS
   Fib_alpha  91 lrlketidaqesnirvLqnvle 112
                 +++k++i++q s i+ Lq+ +e
  CCD26681.1 226 SEFKRQIQEQKSIIQRLQERIE 247
                 4678888888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1366  (0.0761894); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        40  (0.00223102); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.29s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 2609.12
//
Query:       CCD26682.1  [L=244]
Description: hypothetical protein NDAI_0I01130 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.8e-20   70.6  15.2    1.6e-19   69.9  15.2    1.3  1  Ribosomal_L30_N  Ribosomal L30 N-terminal domain
    1.2e-19   70.0   2.9    2.7e-19   68.8   2.9    1.7  1  Ribosomal_L30    Ribosomal protein L30p/L7e


Domain annotation for each model (and alignments):
>> Ribosomal_L30_N  Ribosomal L30 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9  15.2   1.8e-23   1.6e-19       2      72 .]       9      79 ..       8      79 .. 0.98

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 1.8e-23
  Ribosomal_L30_N  2 PEsllKKrkrneklkakrakkaaakkkankkkrklifkRaekYvkEYrqkereeirlkReAkkaGnfyvpa 72
                     PEs lKK k+++k +++ a+++a++k+ank+kr++i  R ++Y++EY+ +er++i++kR Ak++G++yv a
       CCD26682.1  9 PESQLKKSKAQQKSAEQIAAERAERKAANKEKRAIILSRNAAYQAEYETAERAVIQAKRDAKASGSYYVAA 79
                     9********************************************************************76 PP

>> Ribosomal_L30  Ribosomal protein L30p/L7e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   2.9     3e-23   2.7e-19       1      51 []      84     134 ..      84     134 .. 0.99

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 3e-23
                    EEEEE-S-STTS-HHHHHHHHHTT-SSTT.EEEE--SSHHHHHHHHHCCCGE CS
  Ribosomal_L30   1 lfVtrirsiigvppkvrktLqlLgLrkin.gtvvklntpsirGmLkkVkhlV 51 
                    +fV+ri++i+++ppk rk+LqlL+L++in gt+vk +++++  +Lk+++++V
     CCD26682.1  84 VFVVRIKGINKIPPKPRKVLQLLRLTQINsGTFVKVTKATVE-LLKLIEPYV 134
                    69****************************************.********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1494  (0.0833287); expected 358.6 (0.02)
Passed bias filter:                      713  (0.039768); expected 358.6 (0.02)
Passed Vit filter:                        65  (0.00362541); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.24s 00:00:00.75 Elapsed: 00:00:00.42
# Mc/sec: 1733.39
//
Query:       CCD26683.1  [L=600]
Description: hypothetical protein NDAI_0I01140 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.5e-50  170.4  48.6    6.6e-50  170.2  48.6    1.0  1  AA_permease_2  Amino acid permease
    3.1e-22   78.8  39.2    3.9e-22   78.5  39.2    1.0  1  AA_permease    Amino acid permease
  ------ inclusion threshold ------
        1.9    8.6   0.0        1.9    8.6   0.0    3.4  4  Insulin_TMD    Insulin receptor trans-membrane segment


Domain annotation for each model (and alignments):
>> AA_permease_2  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.2  48.6   1.1e-53   6.6e-50       1     424 [.      72     515 ..      72     516 .. 0.83

  Alignments for each domain:
  == domain 1  score: 170.2 bits;  conditional E-value: 1.1e-53
  AA_permease_2   1 lsllsafalvigsvigsgifvkn...laasggpalilwvwiavligslavllvyaElssalprsgGiyvytkaa....fgkkvaflsawfnwfayv 89 
                    +sl+s++++ +g++ + +++ ++   ++ sggp  +++++i++ ++s++ +  + Elssa p+ gG+++++ ++    +++++a++++ f+  + v
     CCD26683.1  72 FSLWSVLGVGFGLTNSWFGISTSmvtGISSGGPMMVIYGIIIIALISICIGTSLGELSSAYPHAGGQFWWSLKLappkYKRLAAYMCGSFAYAGSV 167
                    79************5544444444449999****9999999999999**********999**************4444488888999999999999 PP

  AA_permease_2  90 pvlasilsvaasyllnalgp...dlqgntwltyliaiaililvalinirgikesakiqnilgilkillpliiliilglitvdgggfssl.....st 177
                    ++ as++ +aa   +++ +    d+++++w++++++ ++ ++++++n++g +    i     ++++   ++ +i + +++ ++g+f+++     + 
     CCD26683.1 168 FTSASTTLSAATEVVGMYALtheDFVPKRWHVFVCFEILHLFLMIFNCYGKSL-PIISASSLYISLS-SFL-IITITVLACSRGQFNDAkfvfaT- 259
                    99999999999998776533445***************************854.4444444444442.222.22233444456666666442223. PP

  AA_permease_2 178 etdtffpngwp..g..vllgllivlwsfdGfesaanvseevkk..kdvpkaifigllivlvlyllvniaflgvvpd.deianlsnlgsvaalffea 266
                         + +gw+  g  +++gl   +wsf+  ++a++++ ev+k  + +p+ai + ++i ++  + + i++++ + d d+i ++ +   ++ ++ +a
     CCD26683.1 260 ---FYNETGWKnsGiaFIVGLINPAWSFSCLDCATHMAFEVEKpeRVIPIAILSTIAIGFITSFCYVISMFFSLRDlDSILKSTTGAPILDIYNQA 352
                    ...3444477744233799*********************8887789*****************************88886655545589****** PP

  AA_permease_2 267 vggkvvaiivvilialsllgaintavigssrvlealardgvlP..rffakvn.kfgspiraiiltaivslillllfllassaaynfllsvsslgli 359
                    +g+k++aii+  +i + ++g+++++ ++++r+ +++ard++lP  + +a+vn + g p++a   ++   +++++l+l+ ss+a+n l + +  +l+
     CCD26683.1 353 LGNKAGAIILGCMILFTSFGCVIACHTWQARLGWSFARDNGLPysKLWAQVNpQVGVPLNAHLMSCAWISLIGILYLA-SSTAFNSLITGCIAFLL 447
                    ****************************************************99*******99999998898888866.69*************** PP

  AA_permease_2 360 isyllliigalilrkkrphl....krpgkilvaiigalfllfllvalffppkgpatqssliytiiltva 424
                    +sy++++ ++l+ +++ +h     +++g    +i+ +l+++f++v++ fp   p+t+++++y  +++++
     CCD26683.1 448 LSYIIPVSCLLLKKRQIRHGpfwlGKFG-LFSNIVLLLWTVFAIVFFSFPAMMPVTKDNMNYVAVVIAG 515
                    ******9888877777666533344454.88********************************888775 PP

>> AA_permease  Amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.5  39.2   6.5e-26   3.9e-22      14     473 ..      90     533 ..      76     539 .. 0.75

  Alignments for each domain:
  == domain 1  score: 78.5 bits;  conditional E-value: 6.5e-26
  AA_permease  14 glfvglgvvlsqaGplgallayllagvviflvmlslgeiatngpksggfytyasrflgpe....lGfviGlnylfswitvlaleltaasiliqfwelv 107
                  g+ +++   +s++Gp+ ++ +++++ +++++++ slge+++++p++gg   ++ +   p+    +++++G        ++++  +t as +++ +   
   CCD26683.1  90 GISTSMVTGISSGGPMMVIYGIIIIALISICIGTSLGELSSAYPHAGGQFWWSLKLAPPKykrlAAYMCGSF------AYAGSVFTSASTTLSAA--- 178
                  677889999***************************************876665555554111166666655......33333333333333333... PP

  AA_permease 108 tdlpkawvt...........gavflvvlliinlvgvkvygeaefilalikiiaiiafiivg.iillaggkpnkga..gfrflgdngsifknnlppgfa 191
                  t++  +++            + v + +l ++ ++ + +     +i a+ + i++ +f+i++  +l ++ ++ ++a   f+ ++++++    +  +g  
   CCD26683.1 179 TEVVGMYALthedfvpkrwhVFVCFEILHLFLMIFNCYGKSLPIISASSLYISLSSFLIITiTVLACSRGQFNDAkfVFATFYNETG----WKNSG-- 270
                  344433333444444565454344444444444444455556889999*************98888988888887676666666666....33333.. PP

  AA_permease 192 keeegafknfisvfvivvfaftGielvaiiagEvkdPeksiPkailqvviritifYvlsllligllvprndlgllndsasaaspfvifikesgvsvla 289
                          +fi++++  + +f+     + +a Ev+ Pe+ iP+ail+++ +   f + ++++i++ ++  dl+++ +s ++a+++ i+ + +g+++ a
   CCD26683.1 271 -------IAFIVGLINPAWSFSCLDCATHMAFEVEKPERVIPIAILSTIAI--GFITSFCYVISMFFSLRDLDSILKSTTGAPILDIYNQALGNKAGA 359
                  .......78**************************************9865..44556666666667777777666677788**************** PP

  AA_permease 290 plinaviltaalssansslysasRvlyslakdglaP...kvlkkvskrgvPlraillsmiisllalllaslnlaapivfnfllaisaliglivwllii 384
                   ++ ++il + +++++++ +   R+ +s+a+d+ +P    ++++  + gvPl+a l+s+++  l+  + +l+++  ++fn l++   +  l+ +++  
   CCD26683.1 360 IILGCMILFTSFGCVIACHTWQARLGWSFARDNGLPyskLWAQVNPQVGVPLNAHLMSCAWISLIG-ILYLASS--TAFNSLITGCIAFLLLSYIIPV 454
                  **************************************99999999************99765555.4556666..6788887766666666666666 PP

  AA_permease 385 lsylrfRkalkyqgrsieelgfkaallplgvilvlaaliiillilalyayltvkkgpkdwgaasfaaaylivllfliilvgvklhvknk 473
                   ++l       +++r+i+  +f   + + ++ +++++l++++ i+++  ++ ++ + ++++++  a ++ ++ l+ +++ + k ++ ++
   CCD26683.1 455 SCLL-------LKKRQIRHGPFW-LGKFGLFSNIVLLLWTVFAIVFFSFPAMMPVTKDNMNYV--AVVIAGYTLYSVLYWNFKGYKEFH 533
                  6666.......555566555553.35566677899999**********999999999998876..555666666777776666666555 PP

>> Insulin_TMD  Insulin receptor trans-membrane segment
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   3.3       1.7   9.9e+03      18      32 ..     107     121 ..     102     125 .. 0.52
   2 ?   -3.2   0.8       1.6   9.6e+03      14      29 ..     303     318 ..     297     328 .. 0.48
   3 ?    8.6   0.0   0.00032       1.9      19      44 ..     439     464 ..     428     468 .. 0.85
   4 ?   -3.8   0.1       2.4   1.4e+04      10      20 ..     504     514 ..     500     515 .. 0.72

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.7
  Insulin_TMD  18 vigPviciillllvi 32 
                  vi  +i+i l+++ i
   CCD26683.1 107 VIYGIIIIALISICI 121
                  444455555554444 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 1.6
  Insulin_TMD  14 ivkIvigPviciilll 29 
                  ++ I i + i i ++ 
   CCD26683.1 303 VIPIAILSTIAIGFIT 318
                  4444444444443333 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00032
  Insulin_TMD  19 igPviciillllvigavfvvvkKrQt 44 
                  i   i ++ll+ +i +  +++kKrQ+
   CCD26683.1 439 ITGCIAFLLLSYIIPVSCLLLKKRQI 464
                  56679999*****************7 PP

  == domain 4  score: -3.8 bits;  conditional E-value: 2.4
  Insulin_TMD  10 dpsnivkIvig 20 
                  d  n v++vi+
   CCD26683.1 504 DNMNYVAVVIA 514
                  55678888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       968  (0.0539907); expected 358.6 (0.02)
Passed bias filter:                      455  (0.0253779); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.29s 00:00:00.88 Elapsed: 00:00:00.44
# Mc/sec: 4141.32
//
Query:       CCD26684.1  [L=523]
Description: hypothetical protein NDAI_0I01150 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
      6e-53  179.2   0.0      2e-52  177.5   0.0    1.8  2  DEAD           DEAD/DEAH box helicase
    2.2e-34  118.1   0.1    7.4e-30  103.6   0.0    3.2  3  Helicase_C     Helicase conserved C-terminal domain
    3.9e-08   33.5   3.4      2e-07   31.2   0.0    2.5  2  ResIII         Type III restriction enzyme, res subunit
    7.3e-05   22.1   0.0    7.3e-05   22.1   0.0    2.3  2  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
    0.00037   19.9  13.4     0.0024   17.3   0.0    2.5  2  CMS1           U3-containing 90S pre-ribosomal complex subuni
  ------ inclusion threshold ------
      0.011   15.5  11.6      0.025   14.3  11.6    1.5  1  DUF4638        Domain of unknown function (DUF4638)
      0.021   13.6   0.0      0.021   13.6   0.0    3.1  3  UTP25          Utp25, U3 small nucleolar RNA-associated SSU p
       0.14   12.5   0.5       0.89    9.8   0.5    2.3  1  AAA_22         AAA domain
        4.5    6.8  21.5        8.2    6.0  21.5    1.4  1  SR-25          Nuclear RNA-splicing-associated protein
        8.5    6.5  10.7         41    4.3   9.3    2.2  2  CPSF100_C      Cleavage and polyadenylation factor 2 C-termin
        9.2    6.3   6.1         15    5.6   6.1    1.3  1  RP-C_C         Replication protein C C-terminal region


Domain annotation for each model (and alignments):
>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.5   0.0   1.2e-55     2e-52       1     176 []     130     304 ..     130     304 .. 0.97
   2 ?   -1.6   0.0       1.2   1.9e+03      60     104 ..     368     416 ..     361     462 .. 0.72

  Alignments for each domain:
  == domain 1  score: 177.5 bits;  conditional E-value: 1.2e-55
                 -HHHHHHHHHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHS......TTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx......xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   1 tdiQaeaiplilgggdvlvaaeTGsGKTlaflipvlqivyet......kgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlsk 93 
                 t+iQa ++p +l+g+dv++ aeTGsGKT af +p+++ +++t      k++ g ++l+++PtreLa q+++nl  ++++++l++++++ggv+++ q+ +
  CCD26684.1 130 TPIQAVSWPYLLSGKDVIGVAETGSGKTFAFGVPAIDYLVKTnqsnnkKNSGGIQVLVISPTRELASQIYDNLIILTEKVGLQCCCVYGGVPKEAQRIQ 228
                 89********************************************9999************************************************* PP

                 HHTTCSEEEEEHHHHHHHHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBSHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD  94 ldngvdivvgtpgrlddllstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlpkdvkkl 176
                 l ++ ++vv+tpgrl+dl+++g++nls v++lVlDEadr+l++gf+++i++i++++       ++ rq+++++AT+pk+v++l
  CCD26684.1 229 L-KKSQVVVATPGRLLDLIQEGSVNLSAVKYLVLDEADRMLEKGFEEDIKNIIRET------SPKGRQTLMFTATWPKEVREL 304
                 *.******************************************************......467788*********999875 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 1.2
                 HHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHH...HTT.CSEEEEE CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx...xxx.xxxxxxx RF
        DEAD  60 aeqtlnnlkkfkkyidlrvlliiggvaardqlskl...dng.vdivvgt 104
                  ++ + ++++ +ky +++v +i g+ ++++  ++l   ++g ++++++t
  CCD26684.1 368 YKKEAARVERNLKYNGYEVAAIHGDLSQEQRTRALgefKAGkTNLLLAT 416
                 5556677888888888888888776666666665533333335555555 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00095       1.5      11      61 ..     177     231 ..     164     260 .. 0.78
   2 ?    1.7   0.0      0.19   3.1e+02       6      59 ..     276     332 ..     272     346 .. 0.70
   3 !  103.6   0.0   4.5e-33   7.4e-30       4     111 .]     343     454 ..     340     454 .. 0.89

  Alignments for each domain:
  == domain 1  score: 9.2 bits;  conditional E-value: 0.00095
                 HHTTTTSEEEEEESSHHHHHH....HHHHHHHTTSTEEEESTTSTHHHHHHHHHH CS
  Helicase_C  11 kleeeggkilifvntidrlek....vklllekkgikvavlhgelpqnereeileq 61 
                 k+++ g ++l++++t++ +++    + +l+ek g+++++++g  p++ ++  l++
  CCD26684.1 177 KKNSGGIQVLVISPTRELASQiydnLIILTEKVGLQCCCVYGGVPKEAQRIQLKK 231
                 566778899********5544443556667777**************99988876 PP

  == domain 2  score: 1.7 bits;  conditional E-value: 0.19
                 HHHHH.HHTTTTSEEEEEESSHH.HHHH.HHHHHHHTTSTEEEEST.TSTHHHHHHHH CS
  Helicase_C   6 llell.kleeeggkilifvntid.rlek.vklllekkgikvavlhg.elpqnereeil 59 
                 +++++ +++ +g+++l+f+ t+  ++ + ++ +  ++ +kv + +  el++n+r+  +
  CCD26684.1 276 IKNIIrETSPKGRQTLMFTATWPkEVRElASSF-MNEPVKVSIGNRdELTANKRITQI 332
                 5556666778999********997665443333.244677777777668988888654 PP

  == domain 3  score: 103.6 bits;  conditional E-value: 4.5e-33
                 HHHHHHH....HHTTTTSEEEEEESSHHHHHHHHHHHHHTTSTEEEESTTSTHHHHHHHHHHHHTTSSSEEEESGGGTSSSTSTTESEEEESSSSSSHH CS
  Helicase_C   4 eallell....kleeeggkilifvntidrlekvklllekkgikvavlhgelpqnereeileqfnkgesdvLiatdvaerGidipkvnlVinfdlprnvt 98 
                 ++ll+ll    +   +++k+lif+ +++++ +v+  l+ +g++va++hg+l+q++r ++l +f++g++++L+atdva+rG+dip+v++Vin+ +p +v+
  CCD26684.1 343 RKLLDLLkkyhSGPTKNDKVLIFALYKKEAARVERNLKYNGYEVAAIHGDLSQEQRTRALGEFKAGKTNLLLATDVAARGLDIPNVKTVINLTFPLTVE 441
                 566666655556667899**********886656666888*********************************************************** PP

                 HHHHHHTTSSSTT CS
  Helicase_C  99 syiqriGRtgRag 111
                 +y++riGRtgRag
  CCD26684.1 442 DYVHRIGRTGRAG 454
                 ***********97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   5.9       3.5   5.7e+03      84     115 ..      25      64 ..       2      96 .. 0.46
   2 !   31.2   0.0   1.2e-10     2e-07      30     169 ..     149     297 ..     132     299 .. 0.86

  Alignments for each domain:
  == domain 1  score: -2.9 bits;  conditional E-value: 3.5
                 ....GEEEESSS-B--............-SEEEEEHHHHH CS
      ResIII  84 e...igkkvsgdkkka.....kekdstnkkilvttiqsld 115
                 +   + kk ++dkk++     k++++ ++++  +++ +++
  CCD26684.1  25 KkdkKDKKHKKDKKDKkekkhKKESKPDTEVETEKEPTIS 64 
                 1112112222222222222222333333333333333444 PP

  == domain 2  score: 31.2 bits;  conditional E-value: 1.2e-10
                 EESTTSTHHHHH.HHHHHHH-S.............-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHHHHHHTH. CS
      ResIII  30 kmaTGtGKTlva.aklierllkkgkee........kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiqsldadse 119
                 +++TG+GKT+   + +i++l k ++ +        ++l++ p+++l +q ++++  ++++   + + ++ g  k+a++++ ++++++v+t  +l   + 
  CCD26684.1 149 VAETGSGKTFAFgVPAIDYLVKTNQSNnkknsggiQVLVISPTRELASQIYDNLIILTEKVGLQCCCVYGGVPKEAQRIQLKKSQVVVATPGRLLDLI- 246
                 679*********999999999987777899****************************9999998888888888888889******************. PP

                 .......HHHTTT-SEEEEETGGGTTS.TTTHH.HHHT---.....SEEEEEESS- CS
      ResIII 120 eeeeeseellrdrfdviiiDEaHrlgakkswre.ilekfke.....avllglTATp 169
                     ++ +   ++ ++++ DEa r+ + k ++e i++ ++e        l +TAT 
  CCD26684.1 247 ----QEGSVNLSAVKYLVLDEADRMLE-KGFEEdIKNIIREtspkgRQTLMFTATW 297
                 ....77788888899************.655554655554444477999******6 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   7.6       6.3     1e+04     209     244 ..       9      44 ..       1      54 [. 0.68
   2 !   22.1   0.0   4.5e-08   7.3e-05      30     152 ..     325     454 ..     319     464 .. 0.75

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 6.3
  ERCC3_RAD25_C 209 ystkeeqkellqkvlaakdeeaeeeelekelkekks 244
                     ++k e++e+++k +++kd+++++++++k+ k++k+
     CCD26684.1   9 RKRKVEDEEIIEKKKHKKDKKDKKHKKDKKDKKEKK 44 
                    566778899999999999888887777655544332 PP

  == domain 2  score: 22.1 bits;  conditional E-value: 4.5e-08
  ERCC3_RAD25_C  30 akskkkkllyvmnpnk..fracefLikyhe..krgDkiivfsDnvfaLkeyakklkk.....pyiyGetseaerlkilqkfkknpkvntiflskvg 116
                    a+++  +++ v++p++   + ++ L kyh   +++Dk+++f+       ++ ++lk+     + i+G+ s+++r++ l +fk+  k+n ++   v+
     CCD26684.1 325 ANKRITQIVEVIDPQRkdRKLLDLLKKYHSgpTKNDKVLIFALYKKEAARVERNLKYngyevAAIHGDLSQEQRTRALGEFKAG-KTNLLLATDVA 419
                    5555666777777765223568899999987789*******85555555555555532111257*****************987.78999****** PP

  ERCC3_RAD25_C 117 DtsiDlPeanvliqisshfgsrrqeaqrlGriLrak 152
                       +D+P+ + +i + +  +       r+Gr  ra 
     CCD26684.1 420 ARGLDIPNVKTVINLTFPLTV-EDYVHRIGRTGRAG 454
                    *************99987765.35567777777765 PP

>> CMS1  U3-containing 90S pre-ribosomal complex subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  11.3     0.061        99       4      43 ..       7      54 ..       4     104 .. 0.47
   2 !   17.3   0.0   1.5e-06    0.0024     175     210 ..     229     264 ..     221     285 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.1 bits;  conditional E-value: 0.061
        CMS1  4 derkrkaenkekgkkkksek........kRskkkerkkgklketqDvk 43
                ++rkrk e++e  +kkk++k        k +k+k++kk k  +  D++
  CCD26684.1  7 KDRKRKVEDEEIIEKKKHKKdkkdkkhkKDKKDKKEKKHKKESKPDTE 54
                566666663333222222222112121111111111222211122322 PP

  == domain 2  score: 17.3 bits;  conditional E-value: 1.5e-06
        CMS1 175 ksrigiavGtpgRildLleeeslsvdeLkrivlDas 210
                  ++  + v tpgR+ldL++e+s++++ +k++vlD +
  CCD26684.1 229 LKKSQVVVATPGRLLDLIQEGSVNLSAVKYLVLDEA 264
                 445556788*************************75 PP

>> DUF4638  Domain of unknown function (DUF4638)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.3  11.6   1.5e-05     0.025      45     162 ..      10     123 ..       3     135 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.3 bits;  conditional E-value: 1.5e-05
     DUF4638  45 kkqalqekekkvalskae.ekeekktkgikkkkkgkrkvafseqlaselskkdaalyrrlyeveakgkrlslipssyardsarksdldikDaialestq 142
                 k+++    e+ ++++k++ +k++kk+k+ kk kk k++++ s+  ++ +++k++++++ + +   ++++ls+ip s   +  ++ ++ +kD  +l+  +
  CCD26684.1  10 KRKVED--EEIIEKKKHKkDKKDKKHKKDKKDKKEKKHKKESKPDTEVETEKEPTISKDQDSSYIENEELSIIPQSEVDEFYKENEVSVKDPSDLNLRP 106
                 333222..222222222213344444444444444444455555556666899999999999999**************************98886433 PP

     DUF4638 143 rsssfrrqslvldpllqeti 162
                    sf++ s   d  +q++i
  CCD26684.1 107 -LLSFNHVS--FDERIQDEI 123
                 .45777777..777777775 PP

>> UTP25  Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.05        82      77     100 ..     184     207 ..     170     212 .. 0.87
   2 ?   -0.9   0.0      0.33   5.4e+02     158     206 ..     228     270 ..     226     282 .. 0.79
   3 ?   13.6   0.0   1.3e-05     0.021     239     410 ..     281     437 ..     274     460 .. 0.83

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.05
       UTP25  77 kvLillptreaalevvelllklle 100
                 +vL++ ptre a ++ ++l+ l+e
  CCD26684.1 184 QVLVISPTRELASQIYDNLIILTE 207
                 79***************9997765 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.33
       UTP25 158 kfyssdiiiaSPlglrliieeedkkkrdtdfLsSiEvlivdqadvlemQ 206
                 ++ +s++++a P  l  +i+e+         Ls +  l++d+ad +   
  CCD26684.1 228 QLKKSQVVVATPGRLLDLIQEGS------VNLSAVKYLVLDEADRMLEK 270
                 67899999999999999998333......45999999999999988655 PP

  == domain 3  score: 13.6 bits;  conditional E-value: 1.3e-05
       UTP25 239 ddqakllRQtlvfssyetpeinslfnskleNlaGkvkvkkvvkggslekvglkvrqvFqrfdaesivdepdarfkfftekilpqlkkssskssgiliyi 337
                  +++ + RQtl+f++    e+++l  s++ N   kv + +  +     + + +++q+ + +d +     +d ++      +l++++++ +k++++li+ 
  CCD26684.1 281 RETSPKGRQTLMFTATWPKEVRELA-SSFMNEPVKVSIGNRDEL----TANKRITQIVEVIDPQR----KDRKL----LDLLKKYHSGPTKNDKVLIFA 366
                 5666778999999999999999998.788888888887776665....57788999988888655....34444....4678889999999******** PP

       UTP25 338 psyfdfvrvrnylkeekvsfaaiseysskkevsraRelFfkgkkkvlLyteRlhffrRykikgvkkvilYklP 410
                     +  rv++ lk + ++ aai+   s+++ +ra  +F+ gk+++lL t+ +   r  +i +vk+vi    P
  CCD26684.1 367 LYKKEAARVERNLKYNGYEVAAIHGDLSQEQRTRALGEFKAGKTNLLLATDVAA--RGLDIPNVKTVINLTFP 437
                 *99***********************************************9774..77788888888877766 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.5   0.00055      0.89      70     115 ..     212     279 ..     146     296 .. 0.58

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00055
      AAA_22  70 a......................erlsseellealeqalraravielliiDEaqh.lrseealeeLrsl 115
                                          ++  +ll+++++ + + ++++ l++DEa++ l ++   e+++++
  CCD26684.1 212 QcccvyggvpkeaqriqlkksqvVVATPGRLLDLIQEGSVNLSAVKYLVLDEADRmL-EKGFEEDIKNI 279
                 255566666666666666555454556677888888888888889**********66.65555555444 PP

>> SR-25  Nuclear RNA-splicing-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0  21.5     0.005       8.2      89     137 ..      19      67 ..       7      81 .. 0.68

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.005
       SR-25  89 rkkrgkkkdkkkkkkkkkkkkkkekkkakekakaeaaaaealpgpsldq 137
                  +k+++kkdkk kk+kk kk kkekk++ke++  ++ ++e+ p+ s dq
  CCD26684.1  19 IEKKKHKKDKKDKKHKKDKKDKKEKKHKKESKPDTEVETEKEPTISKDQ 67 
                 4666777777777777778888888888876666666666666555444 PP

>> CPSF100_C  Cleavage and polyadenylation factor 2 C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   9.3     0.025        41      40      75 ..      20      62 ..       2     108 .. 0.44
   2 ?    0.9   0.0      0.28   4.5e+02      16      33 ..     381     398 ..     375     425 .. 0.74

  Alignments for each domain:
  == domain 1  score: 4.3 bits;  conditional E-value: 0.025
   CPSF100_C 40 eekeeeeeeeeeeeeeeeaskkqkl.......aeksekeasee 75
                e+k+ ++ ++++++++++++kk+k+       +++ e+e++++
  CCD26684.1 20 EKKKHKKDKKDKKHKKDKKDKKEKKhkkeskpDTEVETEKEPT 62
                1111122222222222222222222011111122222222222 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.28
   CPSF100_C  16 veglevatvtgeleieee 33 
                  +g+eva++ g l  e++
  CCD26684.1 381 YNGYEVAAIHGDLSQEQR 398
                 579**********94433 PP

>> RP-C_C  Replication protein C C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.1    0.0094        15      44      91 ..      27      76 ..       5     109 .. 0.75

  Alignments for each domain:
  == domain 1  score: 5.6 bits;  conditional E-value: 0.0094
      RP-C_C 44 esalkaenssanesqnerhiqnsnpdsssese..pasekereekeaaaas 91
                ++++k+++++++++++++h+++s+pd + e+e  p  +k++++++ ++++
  CCD26684.1 27 DKKDKKHKKDKKDKKEKKHKKESKPDTEVETEkePTISKDQDSSYIENEE 76
                56788888899999***********9666655337777777776665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2685  (0.149757); expected 358.6 (0.02)
Passed bias filter:                     1076  (0.0600145); expected 358.6 (0.02)
Passed Vit filter:                       256  (0.0142785); expected 17.9 (0.001)
Passed Fwd filter:                        30  (0.00167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.91u 0.29s 00:00:01.20 Elapsed: 00:00:00.44
# Mc/sec: 3600.21
//
Query:       CCD26685.1  [L=238]
Description: hypothetical protein NDAI_0I01160 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.8e-21   74.2   2.8    7.8e-21   74.2   2.8    1.8  2  KxDL          Uncharacterized conserved protein
  ------ inclusion threshold ------
       0.21   11.1   2.8       0.37   10.2   0.4    2.2  2  ANAPC4        Anaphase-promoting complex, cyclosome, subunit 
        1.9    9.1   7.6       0.29   11.7   0.4    2.4  2  Syntaxin-6_N  Syntaxin 6, N-terminal


Domain annotation for each model (and alignments):
>> KxDL  Uncharacterized conserved protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.84     5e+03      59      64 ..      77      82 ..      57     103 .. 0.55
   2 !   74.2   2.8   1.3e-24   7.8e-21       1      86 []     130     215 ..     130     215 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.84
        KxDL 59 evkkdL 64
                   ++L
  CCD26685.1 77 IASQEL 82
                333333 PP

  == domain 2  score: 74.2 bits;  conditional E-value: 1.3e-24
        KxDL   1 rltsavdsedldeilalQaqtsgrlnkknreLlelnalsqerlaklrarfkqgtkllkevkkdLesifkkirslkaklakkyPeeY 86 
                 +lt+av+s+d++e+ + Q++ts+++n+k+ eL +l ++++++l+++++rf++g+ +++++k+++   ++ki++++++l+++yP+e+
  CCD26685.1 130 SLTQAVESIDFSEAFQSQTKTSAVINSKSLELRQLLNMTKKQLNHFQERFENGVVVSNRIKRNIIDARRKINKFNDELRTQYPIEF 215
                 69***********************************************************************************8 PP

>> ANAPC4  Anaphase-promoting complex, cyclosome, subunit 4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.058   3.5e+02      55      81 ..      60      86 ..      36      94 .. 0.84
   2 ?   10.2   0.4   6.2e-05      0.37      10      62 ..     144     196 ..     135     211 .. 0.79

  Alignments for each domain:
  == domain 1  score: 0.5 bits;  conditional E-value: 0.058
      ANAPC4 55 klrnledelkeegeeeksisaeLldll 81
                 l++l+ el++++++++ +s+eL dll
  CCD26685.1 60 SLHALNHELEDNEDDSEIASQELNDLL 86
                577888999999988888888888887 PP

  == domain 2  score: 10.2 bits;  conditional E-value: 6.2e-05
      ANAPC4  10 lssskkelvelarkssqlqslleyinetlkeiseewkealelldrklrnlede 62 
                 ++s+ k    + +ks +l++ll++ +++l++ +e +++ + + +r  rn+ d+
  CCD26685.1 144 FQSQTKTSAVINSKSLELRQLLNMTKKQLNHFQERFENGVVVSNRIKRNIIDA 196
                 33445555666789************************999999999888766 PP

>> Syntaxin-6_N  Syntaxin 6, N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   1.7      0.14   8.1e+02      34      63 ..      52      85 ..       4     105 .. 0.66
   2 ?   11.7   0.4   4.9e-05      0.29       1      75 [.     118     192 ..     118     212 .. 0.78

  Alignments for each domain:
  == domain 1  score: 0.7 bits;  conditional E-value: 0.14
  Syntaxin-6_N 34 s....tseeldetrteLrkalrsiewdledLeet 63
                  s    + e+l+ +++eL+ + ++ e   ++L++ 
    CCD26685.1 52 SdnddEGESLHALNHELEDNEDDSEIASQELNDL 85
                  0122256777777777777666655555555544 PP

  == domain 2  score: 11.7 bits;  conditional E-value: 4.9e-05
  Syntaxin-6_N   1 DPFfevkeeVqkslnkaeslyrrwerlledtssstseeldetrteLrkalrsiewdledLeetvr..iveknpskfk 75 
                   DP f+v + + +sl +a + ++  e  +++t++  s  +++ + eLr+ l+  +++l+ ++e  +  +v +n+ k +
    CCD26685.1 118 DPMFDVSKYIFESLTQAVESIDFSEAFQSQTKT--SAVINSKSLELRQLLNMTKKQLNHFQERFEngVVVSNRIKRN 192
                   999************999999988887777654..899**********************99883335555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1460  (0.0814323); expected 358.6 (0.02)
Passed bias filter:                      475  (0.0264934); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1823.92
//
Query:       CCD26686.1  [L=76]
Description: hypothetical protein NDAI_0I01170 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.4e-18   67.0   0.0    1.6e-18   66.9   0.0    1.1  1  MPC       Mitochondrial pyruvate carriers


Domain annotation for each model (and alignments):
>> MPC  Mitochondrial pyruvate carriers
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   8.8e-23   1.6e-18      45     105 ..       1      61 [.       1      69 [. 0.90

  Alignments for each domain:
  == domain 1  score: 66.9 bits;  conditional E-value: 8.8e-23
         MPC  45 qnlaLlatgliwtryslvikPkNyllaavnfvlelvglvqvsRilkyrlskkdekkeakke 105
                 ++laL++++ ++++y+++++PkNyll++++f++e ++l+q++R+++++++ ++e++++ ++
  CCD26686.1   1 MTLALVVYSGVFMKYTVAVTPKNYLLFGCHFINEGAQLMQGFRFIDFHYFMSEEQQNEIHR 61 
                 799***********************************************99998874443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       831  (0.0463495); expected 358.6 (0.02)
Passed bias filter:                      364  (0.0203023); expected 358.6 (0.02)
Passed Vit filter:                        29  (0.00161749); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 564.53
//
Query:       CCD26687.1  [L=427]
Description: hypothetical protein NDAI_0I01180 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-28   97.7   0.1    8.7e-28   96.7   0.1    1.5  1  MINDY_DUB  MINDY deubiquitinase


Domain annotation for each model (and alignments):
>> MINDY_DUB  MINDY deubiquitinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.1   4.9e-32   8.7e-28       1     117 []      47     173 ..      47     173 .. 0.96

  Alignments for each domain:
  == domain 1  score: 96.7 bits;  conditional E-value: 4.9e-32
   MINDY_DUB   1 vNvLlLsgk........iellpedreevsleeLlelladilldnnplnqeen....lsellelLpklqtgldvnprFdgidsFektselalFdllnipL 87 
                 +NvLlLs          i+l+  +++ev+l++L+ +l++ + +n+++n++++    +++ll++Lp+++ gl vnp F+g  +Fe+  e+alF+l+n+ +
  CCD26687.1  47 CNVLLLSAShstmardlIQLV-GRNNEVTLNDLVYVLSSAANQNRNTNTSSSslidINQLLQYLPQMADGLTVNPGFNG--TFEEGIEMALFRLFNVGI 142
                 9*******************8.99999*****************998887778999***********************..****************** PP

   MINDY_DUB  88 vHGwlvdp.qdaeaaealsaksYneavellv 117
                 vHGw++d  +d+ a++++ +++Y++a+++lv
  CCD26687.1 143 VHGWIIDGeNDPAAYNHVAKYTYESAQRMLV 173
                 ********99*****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1726  (0.0962686); expected 358.6 (0.02)
Passed bias filter:                      561  (0.0312901); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3204.84
//
Query:       CCD26688.1  [L=833]
Description: hypothetical protein NDAI_0I01190 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.9e-18   64.4   0.5    1.7e-17   63.7   0.5    1.3  1  Pkinase      Protein kinase domain
      2e-07   30.6   0.0    3.8e-07   29.6   0.0    1.4  1  Pkinase_Tyr  Protein tyrosine kinase


Domain annotation for each model (and alignments):
>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.5   1.9e-21   1.7e-17      37     264 .]      73     326 ..      59     326 .. 0.77

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 1.9e-21
                 HCHHHH...HHHHHHHHHHHHHSCTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHH......HHSS--HH...........HHHHHHHHHHHHHHHH CS
     Pkinase  37 akkkke...kkvlrEikilkklkhpnivrlyevfee.kdelylvleyveggeladlle......rkgslsee...........eakkiakqilegleyl 114
                 +k+  +   + +++ ++ l+klkhpni++l+e +ee ++++++v+e+v g  l+ + +      +      +            +++ + q+++gl+++
  CCD26688.1  73 DKNLIQegyEVLRKQVNNLAKLKHPNILTLIEPLEEhSKSFLFVTEFVTGS-LDIIFNtsqdneE------QnffkdynkdqiVIQRGILQLVNGLDFI 164
                 333323566788889999***************999456677999999955.6666653335542......23333346777789999*********** PP

                 H.HTTEE-SS-SGGGEEEETTTEEEE-SGTTSEESSSSCS.............BCTTTSCGGGS-HHHHTTSCBSHHHHHHHHHHHHHHHHHSS-STTT CS
     Pkinase 115 H.skgiiHrDlKpeNiLidekgelKitDFGlakelesssk.............ltsfvgtseYlAPEvlkeneyskkvDvWslGvilyelltgkppfsg 199
                 H   + +H  + p+ i+++e+ + K++ +G+  +l ++s+              + +    +Y APE++ ++  + k D++sl++++  l++g+++   
  CCD26688.1 165 HsTTNSVHLNIQPKSIFVNENSDWKLSGLGHLMKLPQGSNtdeyslpmydpriPSFMQLNFDYSAPELMLDHTLTCKNDYFSLALLINFLYCGENIILR 263
                 *44679*******************************9999*********99878888999********************************998763 PP

                 .SSHHHHHHHHHHTHHHHHHHCTSHH...HHHTTS-HHHHHHHHHHT-SSGCCSTT.HHHHHTSGGG CS
     Pkinase 200 .ekgkekvekeldqlekilkilgetkeklpeaseiseeakdllkkllkkdpkkRlt.aeellqhpyl 264
                  e++ ++++ e+ ++e+ + +l       +   +++ ++++ + +l+++d  +R+  +++ l+++++
  CCD26688.1 264 sENSVSQYKDEYSNFERKISTL----SWDKVFIKLPVKLRHCMPSLMNRDIYSRYNnITDFLESEFF 326
                 0344444555555544433333....22345666788888889999999988888767777777776 PP

>> Pkinase_Tyr  Protein tyrosine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   4.3e-11   3.8e-07      45     195 ..      81     251 ..      64     284 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.6 bits;  conditional E-value: 4.3e-11
                  HHHHHHHHHHHHTS-BTTB--EEEEEE.SSSSEEEEEE--TTEBHHHHHHHT.........CTTTSBHHHHHHHHHHHHHHHHHHHHT.TEEEST-SG CS
  Pkinase_Tyr  45 keelleeakimkklkhpnivkllgvct.keepllivteyvkgGdLlkfLrkk.........ekekltlkdllsfalqvAkGmeyLesk.klvHrdlaa 131
                   e l ++++ + klkhpni+ l+     ++++ l+vte+v+ G+L+   +++         ++ + +   + + +lq+ +G+++++s  + vH ++  
   CCD26688.1  81 YEVLRKQVNNLAKLKHPNILTLIEPLEeHSKSFLFVTEFVT-GSLDIIFNTSqdneeqnffKDYNKDQIVIQRGILQLVNGLDFIHSTtNSVHLNIQP 177
                  56677899****************99967778999***995.8999999988888888776444444444556689*********986269******* PP

                  GGEEEEETTEEEE-STTTHEET...TTSSEE.......EETTSSTSGGGGS-HHHHHHSEEEHHHHHHHHHHHH CS
  Pkinase_Tyr 132 rNvLlsenkvvkisDfGLardi...ekddey.......vkkeeaklpvkWmapEslkekkftsksDvWsfGvll 195
                  + ++++en+  k+s  G   ++   +++dey       +  +  +l++ + apE + ++++t k D +s + l+
   CCD26688.1 178 KSIFVNENSDWKLSGLGHLMKLpqgSNTDEYslpmydpRIPSFMQLNFDYSAPELMLDHTLTCKNDYFSLALLI 251
                  *****************5555533444444545543333344566788999******************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1216  (0.0678231); expected 358.6 (0.02)
Passed bias filter:                      547  (0.0305092); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.73u 0.24s 00:00:00.97 Elapsed: 00:00:00.43
# Mc/sec: 5860.60
//
Query:       CCD26689.1  [L=1201]
Description: hypothetical protein NDAI_0I01200 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.03   14.6   0.0        0.3   11.4   0.0    2.7  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.7e-05       0.3      12      89 ..     310     396 ..     303     399 .. 0.78
   2 ?   -3.2   0.0       0.6   1.1e+04      53      71 ..     647     665 ..     634     676 .. 0.55
   3 ?   -1.4   0.0      0.16   2.9e+03      46      74 ..    1089    1117 ..    1088    1125 .. 0.81

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 1.7e-05
  ANAPC4_WD40  12 latedgellvfRl..ngqrvwtl......eedkedsevr.sLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                  + t+dg++  fR+  n + v ++      +   e+   + +L W  ++ l  + y+dg+++lld ++g+ + ++  +sek+   +++
   CCD26689.1 310 IYTKDGRVFSFRItvNQKGVLQVmpwkplDLGVEQLGLKfELIWTFNDGLQFFFYKDGKIHLLDTSKGNKIINIGLTSEKTPEYINY 396
                  6788999999997557778888886666633333444435799****************************9999999887777766 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.6
  ANAPC4_WD40  53 Lavaysdgevrlldaesgk 71 
                  ++ +  dg++ l++   +k
   CCD26689.1 647 IVLSSYDGKILLFSLTLEK 665
                  4444445555555544444 PP

  == domain 3  score: -1.4 bits;  conditional E-value: 0.16
  ANAPC4_WD40   46 WkpdgklLavaysdgevrlldaesgkvvh 74  
                   W++   l+ v +s++++ +++  ++k v+
   CCD26689.1 1089 WRNRIPLFLVTCSNSQLFIISEITKKQVR 1117
                   888888999********999877766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       427  (0.0238162); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.27s 00:00:00.99 Elapsed: 00:00:00.44
# Mc/sec: 8249.92
//
Query:       CCD26690.1  [L=279]
Description: hypothetical protein NDAI_0I01210 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-21   74.9   0.0    1.4e-20   73.8   0.0    1.6  2  SNase     Staphylococcal nuclease homologue


Domain annotation for each model (and alignments):
>> SNase  Staphylococcal nuclease homologue
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       0.5     9e+03      17      33 ..     108     124 ..      96     133 .. 0.63
   2 !   73.8   0.0   7.9e-25   1.4e-20       2      84 ..     165     251 ..     164     263 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.5
                 TTTSTTHHHHHHHHHHH CS
       SNase  17 ktvqpfgkeAkeflkkl 33 
                 k+ ++ g+++k++  k+
  CCD26690.1 108 KNNMNHGNKSKNTKTKE 124
                 34566677776665554 PP

  == domain 2  score: 73.8 bits;  conditional E-value: 7.9e-25
                 EEETTEE-STSSBTTTTTSTTHHHHHHHHHHHHHHCSSEEEEE-SSBSTTSEEEEEEEET.....TEEHHHHHHHTTSSEE--.-BTTS CS
       SNase   2 vrLvgidaPetakpkktvqpfgkeAkeflkklvlqkkvvvleldkkkDkygrllayvyln.....kknineeLvkeGlArvye.vyekn 84 
                 +rL+gidaPe+a++++++qpfg+eA  +l++l+l++  +++ l++  D+y+r++a+v+++     +k++++e++k+G+A vye   +++
  CCD26690.1 165 IRLCGIDAPERAHFGNPAQPFGDEALITLRHLILGRRIWIKPLSI--DQYNRCVARVVYWswlsgWKDVSLEMLKQGMAIVYEgKNNAE 251
                 9********************************************..************99*********************9444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       396  (0.0220871); expected 358.6 (0.02)
Passed bias filter:                      327  (0.0182386); expected 358.6 (0.02)
Passed Vit filter:                        25  (0.00139439); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.36
# Mc/sec: 2328.16
//
Query:       CCD26691.1  [L=700]
Description: hypothetical protein NDAI_0I01220 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
      3e-34  118.4  77.2    4.3e-34  117.9  77.2    1.2  1  MAD              Mitotic checkpoint protein
  ------ inclusion threshold ------
      0.023   15.2   7.8      0.023   15.2   7.8    6.3  6  KELK             KELK-motif containing domain of MRCK Ser/Thr
       0.42    9.9  43.5      0.015   14.7   4.4    3.7  3  DUF4407          Domain of unknown function (DUF4407)
       0.84    9.2  11.2       0.15   11.6   0.8    4.2  4  Trimer_CC        Trimerisation motif
        2.1    8.3  10.5         11    6.0   0.2    5.4  4  Pox_A_type_inc   Viral A-type inclusion protein repeat
        2.9    8.5  10.2          9    7.0   1.0    3.6  3  DUF883           Bacterial protein of unknown function (DUF88


Domain annotation for each model (and alignments):
>> MAD  Mitotic checkpoint protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9  77.2   1.4e-37   4.3e-34      10     657 ..      51     690 ..      43     693 .. 0.84

  Alignments for each domain:
  == domain 1  score: 117.9 bits;  conditional E-value: 1.4e-37
         MAD  10 aleqlknelkqkelehkrarielekkasalkrqleeesdrnqelqkrikllekre...eekeealreqiElarlkkknlealnkkekekesklaearev 105
                 +++ l+ +l+  + e++ ++++++++ ++  +++ ++ d  ++ ++++k l++     + + ++lr+ +  ++  k +++ ++++e+e + k++e++ +
  CCD26691.1  51 KILALQYQLNSLQNEYEIEKLQMQRQLNSVDKEYRNTIDELEKSLNDVKFLHETNdslHDEVTNLRKSLDTVK--KEQQNRIDELESEVNLKHNEVEKL 147
                 5556677777777777777888888888888888888888888888888887766522556667777777777..777888999999999999999999 PP

         MAD 106 isalknelaelkrqiekqelelsekeseleelqerldllkkklseleqliqqlekkqkelaeaeqrikeLefeiqsqeddslivknskselaripelek 204
                 +   +ne+++  +++e+ ++e  ++++ l++ +e+l  + ++++el++l+++ + + + l++++  +k   +++ s ed   i    ++++    +le+
  CCD26691.1 148 KIDFENEISKISHELENVNMENANNKTMLQRYEEELARQSQEIKELNKLNSEKDDEISDLKTKNM-MK--PQQLDSTEDFTTINNMFQDQVKFCKQLEE 243
                 99999999999999999999999999999999999999999999999999998888888887764.44..46677777777777777888888899*** PP

         MAD 205 elerlreenkklnelkenkelLkEevedlkkkLereEkareelvkLelekekleqeLksWeklaqd....tgLnlrsPealsrkieqLqqeeivlkeek 299
                    ++ +e k+l++ ++ +   k e + l+  +    +  +   ++el+  +l+ +L sWe  + d      L++++P+++ r  ++ +     l++ek
  CCD26691.1 244 ANIKQANELKQLRNFQNSNDFYKLENKKLQGEITTLKDSLASFKTMELDFVQLQSKLASWEFFDDDgeinESLKIKEPKDIIRDWKFQKMACTRLSDEK 342
                 *************************************************************987652222678***********99888888899**** PP

         MAD 300 sslesslkqlekaqreleqelaqllkkiedlkkkrkehkelkrRLQrrvllltkErdllrailesyDkelteseaspk.lleRieeaedlvqkvqahne 397
                  +l+ s k l+k ++el+ e +qll    + ++++ + k+l+  L ++ +l   E  llr+ l+  D     ++ +    +  i++ e lv++++ ++e
  CCD26691.1 343 RALDTSYKDLQKLNEELALERNQLLDLNRNYENNLINLKKLNYELEQQRILSFEECKLLRKELDDLDTFNKDNNIDAAvNTDNIKQFEVLVDDYKNKTE 441
                 ***********************9999999999999**************************999998777777765426899**************** PP

         MAD 398 eveaqlevaeeevggykqqastlerelqalr..qqesladassskeevdslkkkleeLelerqrLreqkeelElelerreLqgdydlkktkVlhlseNP 494
                 ++  +l + +ee +      +   ++lq  +  + ++++  ++ ++ +++l+ ++  L    ++  + + +lE ++ + +       kk+++l+l++ P
  CCD26691.1 442 DLTNELRKIHEEQT------KEQKQQLQNSKkrKTNDTNGMTYYSQRINELQIEIGSLSRSIESKDNTITVLENKIRKLTA---LKEKKIRILQLRDSP 531
                 ********997755......3444445544411444444454567777777777777777777777777777777766553...355899********* PP

         MAD 495 aakakqqkkeqlekLqaEierlkellkkleedkekkvaslpessltlafkevleLrkelesaelkiqrlKevFkakiqEFRevvYmLlGYkidittnsq 593
                  +k + +kk++le L+aE+  l + l    +d+e +++++p+s  +  + e+++   e+   ++k+ rlKevF++k++EF +vv +LlG+ki+++++++
  CCD26691.1 532 LLKDQFIKKKELELLRAENRSLLKKLMPDGADTE-NLEQVPISVYNNLNFEINQREEEIFKCNKKLLRLKEVFNKKSLEFIDVVNSLLGFKIEFLQDNK 629
                 *******************998877777889999.7999**996665566999999******************************************* PP

         MAD 594 yRltSmYaeekedallfklsesnesklkLletpfSrtleelidlhlaeqksiPaflsalTLeLf 657
                 +++ S +  +++ +l++ l  ++  + +L + +   +  +l++l++ e++ iP +l+ +TL L 
  CCD26691.1 630 VKIYSCF--KPTHYLMVDLVANTL-RSNLDDPDIIGDWDDLLRLWIGEREQIPCLLATITLRLW 690
                 ******9..688899998887777.55777999****************************985 PP

>> KELK  KELK-motif containing domain of MRCK Ser/Thr protein kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   9.2      0.84   2.5e+03      10      80 .]      64     134 ..      51     134 .. 0.85
   2 ?   -4.0   7.2         6   1.8e+04      17      52 ..     170     205 ..     146     222 .. 0.54
   3 ?   -3.1   5.0       3.7   1.1e+04      14      34 ..     178     198 ..     171     236 .. 0.57
   4 ?    0.1   3.0      0.37   1.1e+03       3      64 ..     239     299 ..     228     317 .. 0.62
   5 ?   -2.7   3.7       2.8   8.4e+03       3      46 ..     350     393 ..     343     413 .. 0.53
   6 ?   15.2   7.8   7.6e-06     0.023       2      77 ..     426     502 ..     425     505 .. 0.92

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 0.84
        KELK  10 rllkqEkeelqkelaeaqErlksqkkeLkdaisqrklamqefsevneklselrsqkqklsRqlrdkeeEle 80 
                    + Ek ++q++l+ +   +++   eL   ++  k   +    + + +++lr+    +  + +++ +Ele
  CCD26691.1  64 NEYEIEKLQMQRQLNSVDKEYRNTIDELEKSLNDVKFLHETNDSLHDEVTNLRKSLDTVKKEQQNRIDELE 134
                 33445788999***************************************************999999987 PP

  == domain 2  score: -4.0 bits;  conditional E-value: 6
        KELK  17 eelqkelaeaqErlksqkkeLkdaisqrklamqefs 52 
                  + +  l+  +E l  q++e+k+  +      +e s
  CCD26691.1 170 ANNKTMLQRYEEELARQSQEIKELNKLNSEKDDEIS 205
                 333344444455555555555554444444444444 PP

  == domain 3  score: -3.1 bits;  conditional E-value: 3.7
        KELK  14 qEkeelqkelaeaqErlksqk 34 
                 +  eel ++ +e++E  k  +
  CCD26691.1 178 RYEEELARQSQEIKELNKLNS 198
                 444566666666666555332 PP

  == domain 4  score: 0.1 bits;  conditional E-value: 0.37
        KELK   3 keLekqlrllkqEkeelqkelaeaqErlksqkkeLkdaisqrklamqefsevneklselrsq 64 
                 k+Le+      +E ++l ++++++++ +k ++k L+ +i+  k  ++ f+ ++    +l+s+
  CCD26691.1 239 KQLEEANIKQANELKQL-RNFQNSNDFYKLENKKLQGEITTLKDSLASFKTMELDFVQLQSK 299
                 55555544444444444.45666666666666666666666555555555555555555544 PP

  == domain 5  score: -2.7 bits;  conditional E-value: 2.8
        KELK   3 keLekqlrllkqEkeelq...kelaeaqErlksqkkeLkdaisqrkl 46 
                 k+L+k  + l  E+++l    +++++    lk+ ++eL    +qr l
  CCD26691.1 350 KDLQKLNEELALERNQLLdlnRNYENNLINLKKLNYELE---QQRIL 393
                 556666666666666543222555555555555555553...33444 PP

  == domain 6  score: 15.2 bits;  conditional E-value: 7.6e-06
        KELK   2 lkeLekqlrllkqEkeelqkelaeaq.ErlksqkkeLkdaisqrklamqefsevneklselrsqkqklsRqlrdkee 77 
                 +k++e  +   k+  e+l++el  ++ E+ k+qk++L++ ++++    + ++  +++++el+ +   lsR +  k++
  CCD26691.1 426 IKQFEVLVDDYKNKTEDLTNELRKIHeEQTKEQKQQLQNSKKRKTNDTNGMTYYSQRINELQIEIGSLSRSIESKDN 502
                 788888899999999********9963699*****************************************998885 PP

>> DUF4407  Domain of unknown function (DUF4407)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.3   0.00029      0.86     133     242 ..      50     160 ..      41     169 .. 0.67
   2 ?   -2.0  18.3      0.61   1.8e+03     104     208 ..     151     341 ..     146     395 .. 0.60
   3 ?   14.7   4.4     5e-06     0.015     107     168 ..     442     516 ..     440     610 .. 0.84

  Alignments for each domain:
  == domain 1  score: 8.9 bits;  conditional E-value: 0.00029
     DUF4407 133 aelaeleaqiaalqaeidaaearldalraeaqkeldgtk...gtgttgvaGkgpaakekkaqldaaqaelaelkakldatarlaalraelaeleaerak 228
                  ++ +l+ q+++lq+e++  + +++++ + ++ke+ +t     +  + v+   +  ++  ++ + +++ l+++k++  ++ r+++l++e +   +e +k
  CCD26691.1  50 HKILALQYQLNSLQNEYEIEKLQMQRQLNSVDKEYRNTIdelEKSLNDVKFLHETNDSLHDEVTNLRKSLDTVKKE--QQNRIDELESEVNLKHNEVEK 146
                 5677889999999999999999999999999999998774332222222222233333444444555555555555..888888888888888888888 PP

     DUF4407 229 eraasqaaaaaddG 242
                  + +++ ++++ ++
  CCD26691.1 147 LKIDFENEISKISH 160
                 88888877776665 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.61
     DUF4407 104 FekeIdaelae.eqqeeakelkeqlaaaltaelaeleaqiaalqaeidaaearldalraeaqkeldgtk.....gtgttgvaGkgpaakekkaqldaaq 196
                 Fe+eI +  +e e+ ++++++++++ + +++ela+  ++i++l++  +++++++++l+++   + ++       +t  +  + + + +k+ ++++ ++ 
  CCD26691.1 151 FENEISKISHElENVNMENANNKTMLQRYEEELARQSQEIKELNKLNSEKDDEISDLKTKNMMKPQQLDstedfTTINNMFQDQVKFCKQLEEANIKQA 249
                 777777666552334556666667777777777777777776666555555555555555544333322444656666668888999***999999999 PP

     DUF4407 197 aelaelkakld................................................................................a 208
                 +el++l++  +                                                                                +
  CCD26691.1 250 NELKQLRNFQNsndfyklenkklqgeittlkdslasfktmeldfvqlqsklasweffdddgeineslkikepkdiirdwkfqkmactrlsdE 341
                 99999988755566666666665555555555555555555555555555555555555555555555555555555555555555555544 PP

  == domain 3  score: 14.7 bits;  conditional E-value: 5e-06
     DUF4407 107 eIdaelaeeqqeeakelkeqlaaa.............ltaelaeleaqiaalqaeidaaearldalraeaqkeld 168
                 +++ el+++++e++ke+k+ql+++             ++++++el+ +i +l++ i++++++++ l+++ +k + 
  CCD26691.1 442 DLTNELRKIHEEQTKEQKQQLQNSkkrktndtngmtyYSQRINELQIEIGSLSRSIESKDNTITVLENKIRKLTA 516
                 678899****************99*********************************************998765 PP

>> Trimer_CC  Trimerisation motif
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1      0.25   7.6e+02      29      48 ..      75      94 ..      73      97 .. 0.89
   2 ?   11.6   0.8   5.1e-05      0.15      29      52 .]     117     140 ..     108     140 .. 0.82
   3 ?   -0.5   0.1      0.31   9.2e+02      20      40 ..     334     354 ..     331     359 .. 0.87
   4 ?    0.4   0.0      0.17     5e+02      17      34 ..     500     517 ..     492     525 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.2 bits;  conditional E-value: 0.25
                HHHHHHHHHHHHHHHHHHHH CS
   Trimer_CC 29 rkLqatVQelQkRLDrLEet 48
                r+L+ +  e    +D+LE  
  CCD26691.1 75 RQLNSVDKEYRNTIDELEKS 94
                8999999999********76 PP

  == domain 2  score: 11.6 bits;  conditional E-value: 5.1e-05
                 HHHHHHHHHHHHHHHHHHHHHHH- CS
   Trimer_CC  29 rkLqatVQelQkRLDrLEetvqaK 52 
                 + L ++  e+Q R+D+LE  v+ K
  CCD26691.1 117 KSLDTVKKEQQNRIDELESEVNLK 140
                 34788889***********99765 PP

  == domain 3  score: -0.5 bits;  conditional E-value: 0.31
                 X--HHHHHHHHHHHHHHHHHH CS
   Trimer_CC  20 avSRLEEelrkLqatVQelQk 40 
                 a  RL  e r L +   +lQk
  CCD26691.1 334 ACTRLSDEKRALDTSYKDLQK 354
                 6789**********9999998 PP

  == domain 4  score: 0.4 bits;  conditional E-value: 0.17
                 XXXX--HHHHHHHHHHHH CS
   Trimer_CC  17 ssdavSRLEEelrkLqat 34 
                 + +++  LE  +rkL a 
  CCD26691.1 500 KDNTITVLENKIRKLTAL 517
                 4558999********985 PP

>> Pox_A_type_inc  Viral A-type inclusion protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2    0.0037        11       5      19 ..      83      97 ..      82      99 .. 0.92
   2 ?    3.2   0.3      0.03        90       7      16 ..     127     136 ..     124     138 .. 0.87
   3 ?    0.1   0.1      0.27   8.2e+02       8      14 ..     202     208 ..     196     210 .. 0.79
   4 ?    0.6   0.0       0.2     6e+02       3      17 ..     433     447 ..     433     449 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.0 bits;  conditional E-value: 0.0037
  Pox_A_type_inc  5 rlRsRIsDLErqLse 19
                    ++R+ I +LE++L++
      CCD26691.1 83 EYRNTIDELEKSLND 97
                    699***********8 PP

  == domain 2  score: 3.2 bits;  conditional E-value: 0.03
  Pox_A_type_inc   7 RsRIsDLErq 16 
                     ++RI +LE++
      CCD26691.1 127 QNRIDELESE 136
                     89******98 PP

  == domain 3  score: 0.1 bits;  conditional E-value: 0.27
  Pox_A_type_inc   8 sRIsDLE 14 
                     ++IsDL+
      CCD26691.1 202 DEISDLK 208
                     6899998 PP

  == domain 4  score: 0.6 bits;  conditional E-value: 0.2
  Pox_A_type_inc   3 msrlRsRIsDLErqL 17 
                     ++ ++++ +DL ++L
      CCD26691.1 433 VDDYKNKTEDLTNEL 447
                     5789*******9999 PP

>> DUF883  Bacterial protein of unknown function (DUF883)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.0     0.003         9       4      61 ..      88     144 ..      83     151 .. 0.85
   2 ?   -1.7   0.1       1.5   4.6e+03      47      47 ..     176     176 ..     149     210 .. 0.52
   3 ?    5.5   0.5    0.0088        26      11      53 ..     426     468 ..     417     480 .. 0.85

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.003
      DUF883   4 eaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakea 61 
                  +ele+ l+d+ ++l+e++d+  +e+ +lR+ l+   ++ ++r++++e +v  + +e+
  CCD26691.1  88 IDELEKSLNDV-KFLHETNDSLHDEVTNLRKSLDTVKKEQQNRIDELESEVNLKHNEV 144
                 56777777777.57889999***************************99998887776 PP

  == domain 2  score: -1.7 bits;  conditional E-value: 1.5
      DUF883  47 l 47 
                 l
  CCD26691.1 176 L 176
                 1 PP

  == domain 3  score: 5.5 bits;  conditional E-value: 0.0088
      DUF883  11 ladleellkeaadeageeaeelRerleerlerarerlrdaeea 53 
                 +++ e l+++ ++++++ ++elR+  ee+ ++ +++l++ +++
  CCD26691.1 426 IKQFEVLVDDYKNKTEDLTNELRKIHEEQTKEQKQQLQNSKKR 468
                 5788999999999999999999999999999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      3027  (0.168833); expected 358.6 (0.02)
Passed bias filter:                      432  (0.024095); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                        71  (0.00396006); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.79u 0.36s 00:00:02.15 Elapsed: 00:00:00.59
# Mc/sec: 3592.67
//
Query:       CCD26692.1  [L=157]
Description: hypothetical protein NDAI_0I01230 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.5e-17   62.8   0.0      3e-17   62.6   0.0    1.1  1  UQ_con    Ubiquitin-conjugating enzyme
     0.0028   17.9   0.0     0.0031   17.8   0.0    1.2  1  RWD       RWD domain


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   3.4e-21     3e-17       2     115 ..      29     147 ..      28     155 .. 0.86

  Alignments for each domain:
  == domain 1  score: 62.6 bits;  conditional E-value: 3.4e-21
                 HHHHHH.HHHHSTTTTEEEEEEE..TTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBE.TTSBB-CGGGSTTT.--TTS CS
      UQ_con   2 lqkelk.elakkkpsgisaklvd..denlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvd.ksGevcldiLkeek.Wspal 95 
                 l +el+   + k p+++s +l d  d  +++w+++i gp+++  e+ ++ + ++  ++YP  pP++kf++ki  P vd  +Gev  + +++ + W+++ 
  CCD26692.1  29 LLEELEkGEKGKGPESCSYGLADgdDITMTNWNGTILGPPHSNHENRIYSVAITCGPNYPDVPPTIKFISKINLPCVDdVTGEVKASSFHTLRdWKRSF 127
                 666666322346678888888886447899*********************************************************9997556***** PP

                 HHHHHHHHHHHHHHS--TTS CS
      UQ_con  96 tlesvllsiqsLlaepnpes 115
                 t+e+ ll + + +a+p +++
  CCD26692.1 128 TMENLLLDLRKEMATPTNKK 147
                 *********99999996554 PP

>> RWD  RWD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.4e-07    0.0031      46      81 ..      53     103 ..      20     151 .. 0.70

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 3.4e-07
                 ..................TT-CEEEEEEEEE-SSTTSS--EEEEEECCSS- CS
                 x...............xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
         RWD  46 e...............feekkkpslkleiklpeeYPeeaPiislsstenlp 81 
                 +               +++ ++  +++ i++ ++YP+++P i++ s+ nlp
  CCD26692.1  53 DditmtnwngtilgppHSNHENRIYSVAITCGPNYPDVPPTIKFISKINLP 103
                 055555555666666566777788899*****************9998555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       364  (0.0203023); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        14  (0.000780858); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.25s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1159.13
//
Query:       CCD26693.1  [L=188]
Description: hypothetical protein NDAI_0I01240 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-34  118.0   1.1    1.7e-34  117.6   1.1    1.2  1  MF_alpha_N  Mating factor alpha precursor N-terminus
    7.8e-28   95.6  47.2    1.1e-06   28.7   5.8    4.2  4  MF_alpha    Yeast mating factor alpha hormone
  ------ inclusion threshold ------
       0.92    9.7  11.6         20    5.4   0.3    4.2  4  Apidaecin   Apidaecin


Domain annotation for each model (and alignments):
>> MF_alpha_N  Mating factor alpha precursor N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   1.1   2.8e-38   1.7e-34       1      81 [.       1      86 [.       1      97 [. 0.89

  Alignments for each domain:
  == domain 1  score: 117.6 bits;  conditional E-value: 2.8e-38
  MF_alpha_N  1 Mkfssilsavallassalaapvstedee.....eeaaevPaeAvigyldlegdndvallpfsnstssGllfvNtTileqaaaeeds 81
                Mkfs++ls++a+las++laap++t+++      +++a++PaeA++gyldl+gdnd+allpf+n+ts+GllfvNtTi+eqa++e+++
  CCD26693.1  1 MKFSTLLSTAAALASTSLAAPINTTETIdnssaATSADIPAEAILGYLDLDGDNDIALLPFANATSNGLLFVNTTIVEQATKEQQN 86
                9************************99888888899*********************************************94443 PP

>> MF_alpha  Yeast mating factor alpha hormone
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   5.8   1.8e-10   1.1e-06       1      13 []     104     116 ..     104     116 .. 0.99
   2 !   28.7   5.8   1.8e-10   1.1e-06       1      13 []     128     140 ..     128     140 .. 0.99
   3 !   28.7   5.8   1.8e-10   1.1e-06       1      13 []     152     164 ..     152     164 .. 0.99
   4 !   28.7   5.8   1.8e-10   1.1e-06       1      13 []     176     188 .]     176     188 .] 0.99

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 1.8e-10
    MF_alpha   1 WHWLrLsrGQPmY 13 
                 WHWLrL++GQP+Y
  CCD26693.1 104 WHWLRLDPGQPLY 116
                 ************9 PP

  == domain 2  score: 28.7 bits;  conditional E-value: 1.8e-10
    MF_alpha   1 WHWLrLsrGQPmY 13 
                 WHWLrL++GQP+Y
  CCD26693.1 128 WHWLRLDPGQPLY 140
                 ************9 PP

  == domain 3  score: 28.7 bits;  conditional E-value: 1.8e-10
    MF_alpha   1 WHWLrLsrGQPmY 13 
                 WHWLrL++GQP+Y
  CCD26693.1 152 WHWLRLDPGQPLY 164
                 ************9 PP

  == domain 4  score: 28.7 bits;  conditional E-value: 1.8e-10
    MF_alpha   1 WHWLrLsrGQPmY 13 
                 WHWLrL++GQP+Y
  CCD26693.1 176 WHWLRLDPGQPLY 188
                 ************9 PP

>> Apidaecin  Apidaecin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.042   2.5e+02       2       9 ..      95     102 ..      94     105 .. 0.65
   2 ?    5.4   0.3    0.0033        20       2      14 ..     117     127 ..     116     129 .. 0.63
   3 ?    4.7   0.1    0.0055        33       2      10 ..     141     149 ..     140     153 .. 0.81
   4 ?    3.0   0.2     0.019   1.2e+02       2      10 ..     165     173 ..     164     177 .. 0.86

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.042
   Apidaecin   2 RReaEaeA 9  
                 +Rea+aeA
  CCD26693.1  95 KREADAEA 102
                 58555555 PP

  == domain 2  score: 5.4 bits;  conditional E-value: 0.0033
   Apidaecin   2 RReaEaeAEPeay 14 
                 +R  Ea+AE ea+
  CCD26693.1 117 KR--EADAEAEAN 127
                 58..666666654 PP

  == domain 3  score: 4.7 bits;  conditional E-value: 0.0055
   Apidaecin   2 RReaEaeAE 10 
                 +Rea+a+AE
  CCD26693.1 141 KREADADAE 149
                 699999998 PP

  == domain 4  score: 3.0 bits;  conditional E-value: 0.019
   Apidaecin   2 RReaEaeAE 10 
                 +Rea a+AE
  CCD26693.1 165 KREAAADAE 173
                 699*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       295  (0.0164538); expected 358.6 (0.02)
Passed bias filter:                      223  (0.0124379); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.25s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 1453.32
//
Query:       CCD26694.1  [L=482]
Description: hypothetical protein NDAI_0I01250 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1496  (0.0834402); expected 358.6 (0.02)
Passed bias filter:                      393  (0.0219198); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.29s 00:00:00.85 Elapsed: 00:00:00.45
# Mc/sec: 3235.25
//
Query:       CCD26695.1  [L=332]
Description: hypothetical protein NDAI_0I01260 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.5e-92  308.8   0.0      3e-92  308.5   0.0    1.0  1  ParA          NUBPL iron-transfer P-loop NTPase
    3.1e-11   43.4   0.0    5.1e-11   42.7   0.0    1.4  1  CbiA          CobQ/CobB/MinD/ParA nucleotide binding domain
    1.4e-06   28.3   0.7    4.7e-05   23.4   0.7    2.1  1  AAA_31        AAA domain
    8.2e-05   22.0   0.0    0.00013   21.3   0.0    1.3  1  MipZ          ATPase MipZ
     0.0008   18.7   2.1     0.0039   16.4   0.4    2.4  3  ArsA_ATPase   Anion-transporting ATPase
  ------ inclusion threshold ------
      0.016   15.1   0.0      0.032   14.1   0.0    1.4  1  RsgA_GTPase   RsgA GTPase
      0.028   13.9   0.1      0.046   13.2   0.1    1.5  1  CBP_BcsQ      Cellulose biosynthesis protein BcsQ
      0.029   13.9   0.2      0.073   12.6   0.2    1.7  1  TF_Zn_Ribbon  TFIIB zinc-binding
        0.1   12.4   0.0        1.1    9.0   0.0    2.1  2  AAA_26        AAA domain
        0.1   12.1   0.0       0.17   11.4   0.0    1.3  1  AAA_25        AAA domain
       0.19   11.6   0.0       0.31   10.9   0.0    1.3  1  Rad17         Rad17 P-loop domain


Domain annotation for each model (and alignments):
>> ParA  NUBPL iron-transfer P-loop NTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.5   0.0   1.8e-95     3e-92       2     245 ..      75     325 ..      74     326 .. 0.96

  Alignments for each domain:
  == domain 1  score: 308.5 bits;  conditional E-value: 1.8e-95
        ParA   2 vkkviavlSgKGGVGKStvavnlAlaLa.kkglkvgllDaDiyGpsiprllgveeekpeqsekkliPvea.kgikvmSigfllesedeavvwrGpmksk 98 
                 ++++i+vlSgKGGVGKSt+++ l++aL+ +++l+vg +D+Di+Gps+p++lg++ee +++s+++++Pv++ +++ +mSi+f+l+++d+av+wrG++k+ 
  CCD26695.1  75 IQHKILVLSGKGGVGKSTFTTMLSWALSaDEDLQVGAMDLDICGPSLPHMLGCTEEVVHESNSGWTPVYVaDNLAAMSIQFMLPEDDSAVIWRGSKKNL 173
                 89*************************85899*************************************989*************************** PP

        ParA  99 aikqllkdvewgelDyLiiDlPPGtgDeqltvaqkl...plagaviVttpqevaladvkkaiemfkkvkvkvlGvveNmsgfvcpkcgekteif..gkg 192
                 +ik++lkdv+w+ lDyL++D+PPGt+De++++ + +    ++ga++Vttpqeval dv+k+i++++k+ +k+lG+veNmsgfvcp+c+ +++if  ++g
  CCD26695.1 174 LIKKFLKDVDWDYLDYLVVDTPPGTSDEHISINKYMqesGIDGALVVTTPQEVALLDVRKEIDFCQKAGIKILGLVENMSGFVCPNCKGESQIFkaTTG 272
                 ********************************9888666789****************************************************55569 PP

        ParA 193 ggeklaeelgvpllgeipldpeireasdegkplvlkepeseaakaleeiaekv 245
                 gge+l++elg+++lg++pldp+i ++sd g++++ + pes+a+ a+ +++e++
  CCD26695.1 273 GGEALCKELGINFLGSVPLDPRIGKCSDFGESFLDAYPESPASLAVLNVVEAL 325
                 *******************************************9999999875 PP

>> CbiA  CobQ/CobB/MinD/ParA nucleotide binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   3.1e-14   5.1e-11       1     127 [.      79     304 ..      79     305 .. 0.89

  Alignments for each domain:
  == domain 1  score: 42.7 bits;  conditional E-value: 3.1e-14
                 EEEEESSTTSSHHHHHHHHHHHHHH.TT--EEEEEEEESSCCCCH.HTTEB-HHHH........................................... CS
                 xxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx.xxxxxxxxxx........................................... RF
        CbiA   1 iaiastkGGvGKTtlaanLaralar.rglrVllvDaDpqannlai.leglendiep........................................... 54 
                 i++ s+kGGvGK+t+++ L  al+  + l+V + D+D  +++l + l  +e+ +++                                           
  CCD26695.1  79 ILVLSGKGGVGKSTFTTMLSWALSAdEDLQVGAMDLDICGPSLPHmLGCTEEVVHEsnsgwtpvyvadnlaamsiqfmlpeddsaviwrgskknllikk 177
                 789********************9978******************5555555555599***************************************** PP

                 ................................................................CCHCCCHHHHHHCHCHHHH..EEEEEEEEESS... CS
                 ................................................................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  55 ................................................................dlkrllellealgkkkalllkiagvvlnrvdgene 89 
                                                                                 ++ ++l+l+e+++          +v +n  ++++ 
  CCD26695.1 178 flkdvdwdyldylvvdtppgtsdehisinkymqesgidgalvvttpqevalldvrkeidfcqkaGI-KILGLVENMS---------GFVCPNCKGESQI 266
                 ****************************************************66666666666333.4566666666.........3577898999999 PP

                 -TTCHHHHHHHHHHCTS-EEEEEE--CCHCCCCHHTS- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        CbiA  90 etllkealeelkqrygvpvlgviprdeavaeapargep 127
                 +++   + e l++++g+++lg++p d ++ ++   ge+
  CCD26695.1 267 FKATTGGGEALCKELGINFLGSVPLDPRIGKCSDFGES 304
                 9****************************999998876 PP

>> AAA_31  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.7   2.9e-08   4.7e-05       4     129 ..      79     198 ..      76     244 .. 0.73

  Alignments for each domain:
  == domain 1  score: 23.4 bits;  conditional E-value: 2.9e-08
      AAA_31   4 IaianqKGGvGKTTtsvnlaaala.klgkkvLlvDlDpQanat.tglgiekneiektlyevlieeknikeaiiktkvenldlipssidLaeaeielvel 100
                 I +   KGGvGK+T +++l+ al+  ++ +v  +DlD  + +    lg+     ++++++   +++    +++    +nl  +  +  L e +  ++  
  CCD26695.1  79 ILVLSGKGGVGKSTFTTMLSWALSaDEDLQVGAMDLDICGPSLpHMLGC-----TEEVVHE--SNSGWTPVYV---ADNLAAMSIQFMLPEDDSAVIWR 167
                 778899*****************87999*********987654044553.....2233333..2444555555...56777777778888888888887 PP

      AAA_31 101 ekkeeil.kellekvkdeY.DyiiiDcpPsL 129
                  +k++ l k++l++v+ +Y Dy ++D+pP  
  CCD26695.1 168 GSKKNLLiKKFLKDVDWDYlDYLVVDTPPGT 198
                 77777777********9988*********64 PP

>> MipZ  ATPase MipZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   8.1e-08   0.00013       1     112 [.      77     200 ..      77     232 .. 0.70

  Alignments for each domain:
  == domain 1  score: 21.3 bits;  conditional E-value: 8.1e-08
                 EEEEE--SSTTSSHHHHHHHHHHHHH.TTT--EEEEE--TTT-HHHHHHHHHHHHHHHHT.....-....-----EE.E-SSS-HHHHTTS-HHHHHHH CS
        MipZ   1 hvivlgnekGGsGksttavhvavaLl.kkGarvaaidldlrqrtlarylenraataerkg.....l....sLplpea.lalseaeeaeveeeeeaevae 88 
                 h i +   kGG Gkst +  +  aL+ ++ ++v+a+dld+   +l + l+   +++++++     +    +L+  ++ ++l+e ++a + ++++ +   
  CCD26695.1  77 HKILVLSGKGGVGKSTFTTMLSWALSaDEDLQVGAMDLDICGPSLPHMLGCTEEVVHESNsgwtpVyvadNLAAMSIqFMLPEDDSAVIWRGSK-KNLL 174
                 56778889*****************725789******************999888766542222212222344433313455655555555554.5478 PP

                 HHHHHHHHHHH.-SEEEEE--.SS-- CS
        MipZ  89 leelvadleae.ldfividtP.Gsds 112
                 +++ ++d+  + ld++v+dtP G+ +
  CCD26695.1 175 IKKFLKDVDWDyLDYLVVDTPpGTSD 200
                 89999998865269*****9735443 PP

>> ArsA_ATPase  Anion-transporting ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.4   2.4e-06    0.0039       1      28 [.      77     104 ..      77     162 .. 0.81
   2 ?    1.1   0.1      0.11   1.8e+02     113     134 ..     175     196 ..     154     212 .. 0.81
   3 ?   -2.5   0.0       1.4   2.3e+03     197     241 ..     205     249 ..     197     260 .. 0.72

  Alignments for each domain:
  == domain 1  score: 16.4 bits;  conditional E-value: 2.4e-06
                  -EEEEEEESTTSSHHHHHHHHHHHHHHT CS
  ArsA_ATPase   1 lkvilvgGKGGVGKttvsaatavklsek 28 
                  +k+++++GKGGVGK+t  + ++  ls  
   CCD26695.1  77 HKILVLSGKGGVGKSTFTTMLSWALSAD 104
                  5899**************9999999864 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.11
                  HHHHHHHHHCSSSSEEEEESBS CS
  ArsA_ATPase 113 feellkyvkeeeydvvvlDtaP 134
                   +++lk v+ +  d++v+Dt+P
   CCD26695.1 175 IKKFLKDVDWDYLDYLVVDTPP 196
                  5677778888888999999998 PP

  == domain 3  score: -2.5 bits;  conditional E-value: 1.4
                  HHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEE CS
  ArsA_ATPase 197 veeiltdpertsfrlVvipEklslkEteRaikeLkkygikvdavi 241
                  +++ +++  +    +V++p +++l + ++ i   +k gik+  ++
   CCD26695.1 205 INKYMQESGIDGALVVTTPQEVALLDVRKEIDFCQKAGIKILGLV 249
                  556666666666677888888888888888888888888776665 PP

>> RsgA_GTPase  RsgA GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   0.0     2e-05     0.032      97     120 ..      75      98 ..      64     114 .. 0.79

  Alignments for each domain:
  == domain 1  score: 14.1 bits;  conditional E-value: 2e-05
                  CTTSEEEEECSTTSSHHHHHHHHC CS
  RsgA_GTPase  97 lkdktsvlvGqSGvGKStLinall 120
                  +++k+ vl G+ GvGKSt+  +l 
   CCD26695.1  75 IQHKILVLSGKGGVGKSTFTTMLS 98 
                  6789**************998875 PP

>> CBP_BcsQ  Cellulose biosynthesis protein BcsQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.1   2.8e-05     0.046       2      61 ..      78     142 ..      77     224 .. 0.83

  Alignments for each domain:
  == domain 1  score: 13.2 bits;  conditional E-value: 2.8e-05
    CBP_BcsQ   2 kvlalqGvRGGvGttsllaaLawalhelge...svlviDlspd...nlLrlhFnvdieqregwara 61 
                 k+l+l+G +GGvG+++ +++L+wal + ++     + +D++      +L    +v +e+++gw+  
  CCD26695.1  78 KILVLSG-KGGVGKSTFTTMLSWALSADEDlqvGAMDLDICGPslpHMLGCTEEVVHESNSGWTPV 142
                 5788999.8****************87544211445556654312256777777777777788765 PP

>> TF_Zn_Ribbon  TFIIB zinc-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.2   4.5e-05     0.073       1      23 [.     255     279 ..     255     280 .. 0.78

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 4.5e-05
                   EEETTTTCEECHEE..TSTTCEEES CS
  TF_Zn_Ribbon   1 ykCPnCgstnlveD..pergelvCt 23 
                   ++CPnC+++++++   +  ge +C+
    CCD26695.1 255 FVCPNCKGESQIFKatTGGGEALCK 279
                   79******99766644777888887 PP

>> AAA_26  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1       0.2   3.2e+02       2      26 ..      78     102 ..      77     110 .. 0.82
   2 ?    9.0   0.0   0.00067       1.1     132     195 ..     218     296 ..     168     299 .. 0.78

  Alignments for each domain:
  == domain 1  score: 1.0 bits;  conditional E-value: 0.2
      AAA_26   2 tifvtgtdtgvGKTvvslgLvralk 26 
                 +i+v +   gvGK++ +++L  al+
  CCD26695.1  78 KILVLSGKGGVGKSTFTTMLSWALS 102
                 689999999********99988875 PP

  == domain 2  score: 9.0 bits;  conditional E-value: 0.00067
      AAA_26 132 ilVargglgtinqllltiealrqknvrvlGvilNk....vrnpe...........nvetlekksgipvlGvvPylpdle 195
                 ++V+++++ ++ ++   i+++++ ++++lG++ N     ++n +             e+l+k  gi+ lG+vP +p+++
  CCD26695.1 218 LVVTTPQEVALLDVRKEIDFCQKAGIKILGLVENMsgfvCPNCKgesqifkattgGGEALCKELGINFLGSVPLDPRIG 296
                 456666777888899999**************998665433332445666667778999999999*********99875 PP

>> AAA_25  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011      0.17      33      59 ..      77     103 ..      62     112 .. 0.85

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
      AAA_25  33 gelallaGapgtGKttlaldlalavat 59 
                 +++ +l G +g+GK+t+++ l+ a++ 
  CCD26695.1  77 HKILVLSGKGGVGKSTFTTMLSWALSA 103
                 67889*************999887764 PP

>> Rad17  Rad17 P-loop domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00019      0.31      37      70 ..      69     102 ..      64     115 .. 0.85

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 0.00019
       Rad17  37 advLesrkkriLLisGPsGCgkstvvkvLskelg 70 
                 ++ L   +++iL++sG  G gkst   +Ls  l+
  CCD26695.1  69 TENLAGIQHKILVLSGKGGVGKSTFTTMLSWALS 102
                 67778889******************99997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       595  (0.0331865); expected 358.6 (0.02)
Passed bias filter:                      521  (0.0290591); expected 358.6 (0.02)
Passed Vit filter:                        91  (0.00507558); expected 17.9 (0.001)
Passed Fwd filter:                        11  (0.000613531); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.53u 0.23s 00:00:00.76 Elapsed: 00:00:00.40
# Mc/sec: 2460.84
//
Query:       CCD26696.1  [L=1321]
Description: hypothetical protein NDAI_0I01270 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.5e-47  159.9   0.0    1.2e-46  158.5   0.0    1.8  1  Nucleoporin2    Nucleoporin autopeptidase
    1.1e-30  106.8   0.7      3e-29  102.1   0.7    2.4  1  Nup96           Nuclear protein 96
    1.7e-09   38.4  91.7    4.8e-05   24.1  24.5    4.8  4  Nucleoporin_FG  Nucleoporin FG repeat region


Domain annotation for each model (and alignments):
>> Nucleoporin2  Nucleoporin autopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.5   0.0     2e-50   1.2e-46       2     149 .]     466     617 ..     465     617 .. 0.94

  Alignments for each domain:
  == domain 1  score: 158.5 bits;  conditional E-value: 2e-50
                   TTEEEES-HHHHHTS-HHHHTSBSS-EEEETTTEEEEESS-B--GGG..-.HHHHBTTTEEEET.TEEEESSSCCC.---TTSTT-S-EEEEESS-- CS
  Nucleoporin2   2 gdYytePsleeLkkmseeelsavkdFtvgrkgvGsveFlepvdlssl..d.ldeiagkivklek.kevtVYpdeekekppvGegLNkpaeitLenvw 94 
                   ++Y+++Ps ++L++m  ++l++v++F++grkg+G ++F+++vdl +l  d  ++++g+iv +++ k+v+VYpde +ekpp+G gLN+pa+itLen++
    CCD26696.1 466 NGYWCSPSPDQLRDMPLKKLTSVSSFVIGRKGYGYITFNDTVDLLALinDiENNLFGNIVIFHSsKTVEVYPDE-SEKPPIGYGLNVPATITLENIY 561
                   68******************************************99975457899*******97689*******.55******************** PP

                   -B-TTT--B---TT-H.HHHHHHHHHHH-SSSEEEEEETTTTEEEEEES--XXXXX CS
  Nucleoporin2  95 pkdkatkeeikdkska.rvkkhieklkkvegteFvsydpetgtwtfkVeHFsrYgl 149
                   p+dk tk+ +k++s+  +++ +++klk+++g+eF+sydp  g+wtfkV+HFs++gl
    CCD26696.1 562 PVDKVTKKVMKNASNInEIQLLTKKLKTMRGMEFISYDPFGGIWTFKVKHFSIWGL 617
                   *********99999875888999*******************************97 PP

>> Nup96  Nuclear protein 96
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.1   0.7     5e-33     3e-29       2     291 ..     925    1176 ..     924    1177 .. 0.93

  Alignments for each domain:
  == domain 1  score: 102.1 bits;  conditional E-value: 5e-33
       Nup96    2 kifalLsghqveeAcelAldagdlrLAtllsqagg.ddevrkdlqeQleeWreekvdseieeellkiyelLaGnvlvsegkk.kkestinvlegldW 96  
                  +if +L  ++v +A +l +++ + +LA+ll+ +g+ d++vr++   Ql++W++++   +++ ++++iy+l++G + ++++++       ++l + +W
  CCD26696.1  925 QIFIYLLLNDVTNATKLSIKSSNGHLAILLTYLGSnDPRVRELGLLQLNAWKSNGQ--KVDSKIVRIYQLISGTL-FQDSSNlD-----KLLDEFSW 1013
                  79*********************************56667**************98..9***************9.66666644.....7899**** PP

       Nup96   97 kralglhlwYgisadasieeaveaYeealesgeetakPlpwyleetskesskdakeekrerDllyhLLklyakktaslesvlePesvspspldyrls 193 
                  +  lgl l+Y   ++ s+e+ + a  + +       +P+                     +  +y L +l+   t s e++++  + +++ +d+++s
  CCD26696.1 1014 LSLLGLSLYYCKIDEYSLEDLILAHISLF-------SPVV----G---------------DKKIYYLFQLFGVGTDSTENLFKEIQLKSNDIDIQFS 1084
                  ***************************99.......7888....1...............1348********************************* PP

       Nup96  194 WhLyqvLsaasaeaeklssakadaltlsfasqLeaaglwewAvfVllhledparRekavkellarhasleeesddakeeflveklkiPeaWiheAkA 290 
                  W  +q+L+    +++++s +  d   l+f   L  ++  ++A++V ++++++a  ++ +  +l++++s+      ++++ ++e+lkiP++ ih+A A
  CCD26696.1 1085 WYFVQILK--FNKIRSFSAELLDLFSLQFIEDLTHCQWYKEALYVSCFISNEAVNKQQIDLILNQKIST----LFNDTSNILEDLKIPSTLIHNALA 1175
                  ********..5799999****************************************************....777888888**************9 PP

       Nup96  291 l 291 
                  l
  CCD26696.1 1176 L 1176
                  7 PP

>> Nucleoporin_FG  Nucleoporin FG repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1  24.5     8e-09   4.8e-05      10      91 .]      10     105 ..       1     105 [. 0.73
   2 !   17.5  13.7   9.3e-07    0.0056      49      91 .]      95     142 ..      90     142 .. 0.87
   3 !   15.7  37.5   3.4e-06     0.021       1      84 [.     139     228 ..     131     240 .. 0.67
   4 ?   -0.3   1.1      0.33   1.9e+03      54      88 ..     301     339 ..     258     356 .. 0.59

  Alignments for each domain:
  == domain 1  score: 24.1 bits;  conditional E-value: 8e-09
  Nucleoporin_FG  10 tsgglFGststtatstgglFGasstatatasggglfgat.........sqtaasgglFGstnattqtta.tgglFGstaataqq......ttsgg 88 
                      +g+lFG+ +t++++++ +  ++++++ +++ g lfg+t         + ++a+g+lFG++n+++++++ +++lFG+++++a+        ++gg
      CCD26696.1  10 GNGSLFGNLNTSTPTSTPI-PNANPQQLPKTDG-LFGKTlnagnigtsTPSPAGGPLFGANNTNNNNNNnQTSLFGNSNNNANMnqqpaqVPTGG 102
                     5667777777774444333.3355555555555.77777777777766999999**********999999******9998886677888777888 PP

  Nucleoporin_FG  89 lFG 91 
                     lFG
      CCD26696.1 103 LFG 105
                     999 PP

  == domain 2  score: 17.5 bits;  conditional E-value: 9.3e-07
  Nucleoporin_FG  49 sqtaasgglFGstnattqttatgglFGstaataqq.....ttsgglFG 91 
                      ++ ++gglFG++++t+++++ g+lFG+t++++ +     +t+++lFG
      CCD26696.1  95 PAQVPTGGLFGNSATTNNNNNAGSLFGNTNTNQGNmmggaPTGQSLFG 142
                     567789************999******999998889**9999999**9 PP

  == domain 3  score: 15.7 bits;  conditional E-value: 3.4e-06
  Nucleoporin_FG   1 glFG.aaatstsgglFGststtatstgglFGasstatatasggglfgat.sqtaasgglFGstnattqtta....tgglFGstaataqq..t 84 
                     +lFG +++++ +gglFG++st++t ++   G  +++++t ++g  +g++  ++aa+gglFG+++ tt+t++     +glFG+ ++++ q  +
      CCD26696.1 139 SLFGnSKTATGGGGLFGNSSTNNTMNNFSLG--GSNSNTLKTGFGTGNSlGSSAATGGLFGNSTGTTTTQQqqlpPTGLFGNITNNTFQpqQ 228
                     4677555555566777777777555555555..33333333332445558899999999999998888887889999999988888877431 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.33
  Nucleoporin_FG  54 sgglFGstnattqtta...tgglFGstaataqq.ttsgg 88 
                      ++lF + n+  +t     t glF s+++ ++  ++s++
      CCD26696.1 301 RSSLFNKLNTRLNTIHdvsTRGLFSSPSPYNERsNPSTS 339
                     445555555444444444555555555444433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1321 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2031  (0.11328); expected 358.6 (0.02)
Passed bias filter:                      537  (0.0299515); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.91u 0.25s 00:00:01.16 Elapsed: 00:00:00.44
# Mc/sec: 9005.55
//
Query:       CCD26697.1  [L=982]
Description: hypothetical protein NDAI_0I01280 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-55  186.6  16.1    9.9e-55  185.6  16.1    1.5  1  Spc7      Spc7 kinetochore protein


Domain annotation for each model (and alignments):
>> Spc7  Spc7 kinetochore protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.6  16.1   5.5e-59   9.9e-55       6     308 ..     511     822 ..     508     824 .. 0.91

  Alignments for each domain:
  == domain 1  score: 185.6 bits;  conditional E-value: 5.5e-59
        Spc7   6 isLqdFLnmtgIrFmdl...tttkrrstiaptaeekeeeekisledyvvAaactvPlLeLYqhscreLkkyisegrkiireieeetlee.nPpLfreYm 100
                 +sL +FL++t ++F+ +   ++ k+++ + +   +++++ +++++++++A++++vP+Le++ ++c+eL ++is++++ ++++e+++ +  +P L++eY+
  CCD26697.1 511 YSLREFLDKTDVSFLIDpgkVKLKDKKITFMYMDSNSSDISLPINKLYNALYVDVPVLEMNAFICKELFRKISQSKQSFEDLETQISSSvPPLLLKEYF 609
                 79************8877888889999998888888999999**********************************************989999***** PP

        Spc7 101 eadpdvkalmdnqfklvKtnarlqakkdWYeWRmqllegLkegleenlegleedkelLekqeeeldellpeleeekaeleeeleklqe.....aaeele 194
                 ++++++k+lm++q++lvK +++l+akk WYeWR  +l+g+k++l enl+ l+e+ e+ +++ ++l e  +++ee k++l+ e++ l+e      a e +
  CCD26697.1 610 TSSEEMKKLMNDQMQLVKMYSKLEAKKAWYEWRKLHLNGIKNVLIENLALLQEELERTKSSLQKLYETRKRIEEIKDSLKYEVKLLKEmppnsVASEPT 708
                 ****************************************************************************************87765555555 PP

        Spc7 195 sidkeeLeelreelaelkaeieekkkelaelqeqleeleekieelkeqkseleeeiaeaervle.eckgwsesevsrlkeevkaleeltgwkivslsgs 292
                   dk +L++l++el ++k ++e     l +lq++ ++++ +iee +++ s+l+ee+++ +   +  +   ++ ++  l +++k le+ + ++ ++  gs
  CCD26697.1 709 LEDKVKLASLKQELIAHKITLE----SLPDLQKKNDAIRLEIEEKTNKLSKLKEELSHLDTEDNtTTALLEKGDITVLSAKLKYLEKMLHVRATRFVGS 803
                 599*******************....9******************************9986655056678899************************** PP

        Spc7 293 tleltyrse...levsfdl 308
                 +l+l+++ +   +e+++++
  CCD26697.1 804 LLTLEFDLDdglIELTINI 822
                 9888775433355666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (982 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1312  (0.0731775); expected 358.6 (0.02)
Passed bias filter:                      413  (0.0230353); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.73u 0.29s 00:00:01.02 Elapsed: 00:00:00.45
# Mc/sec: 6536.08
//
Query:       CCD26698.1  [L=1130]
Description: hypothetical protein NDAI_0I01290 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.2e-65  221.4   5.6      3e-65  220.9   5.6    1.2  1  UCH_1          Ubiquitin carboxyl-terminal hydrolase
    1.5e-20   74.4   0.0    3.5e-20   73.2   0.0    1.7  1  RNase_T        Exonuclease
  ------ inclusion threshold ------
      0.016   15.5   0.0       0.53   10.6   0.0    3.0  4  ANAPC4_WD40    Anaphase-promoting complex subunit 4 WD40 doma
      0.048   14.5   1.9         42    5.2   0.0    4.3  4  WD40           WD domain, G-beta repeat
        0.1   12.3   0.0       0.22   11.2   0.0    1.5  1  Peptidase_C28  Foot-and-mouth virus L-proteinase
       0.14   12.1   0.3       0.31   11.0   0.3    1.5  1  CDC37_M        Cdc37 Hsp90 binding domain


Domain annotation for each model (and alignments):
>> UCH_1  Ubiquitin carboxyl-terminal hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.9   5.6     1e-68     3e-65       1     320 []     500     842 ..     500     842 .. 0.90

  Alignments for each domain:
  == domain 1  score: 220.9 bits;  conditional E-value: 1e-68
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx........ RF
       UCH_1   1 sGLEnhivnsYlNslLQvlyfipplrnlalshlakeckkehcLlcElgflfdmldkakglncqasnFlralssipeasalglileeeeete........ 91 
                 sGL+++i+n Y+N++LQ+++f+p+++n+++ +l++e+ ++  Ll +lg+l+dm+ +++g+ c +s F+ al+si ea++l+l+   +e  +        
  CCD26698.1 500 SGLDTDIDNLYTNAILQLYRFVPEVYNFVVGCLKDENLDKITLLSDLGYLYDMMGRSRGKVCSSSGFQLALNSIDEAKELNLVNTPNEY-Tkdtlaldr 597
                 8*********************************************************************************9554333.258899999 PP

                 .....................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.x. RF
       UCH_1  92 .....................kssaislssliqsfnrflldqlekelketkknsseeesaieqllgtkaettirclkCgseksrksstlvldlkyP.k. 167
                                      k  ++ ++sl q+fn fll++l ke+ +t+     +++a+eq++g+++et+++ + C+ ++++++++ +l +  P + 
  CCD26698.1 598 lnlnsdkltppstsstsssysKPVEKLYKSLSQRFNDFLLSRLIKEEFTTTG----NNTALEQCFGFQLETNVNAT-CNDYERQSTIIPTLTVLSPaRn 691
                 99999999999999999888877777888899**************999875....8999****************.**************99999745 PP

                 .....xxxx..xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 168 .....psne..kkeakvtfasilksslerekttrawCekCkryqpteqrktvknlPpvLalnakleeeeelelwkt.knwlpleiklsldedknleekl 258
                      +  +  ++++++++ +++++s++r k++++ C+kC++++ +e ++t+knlPpvL+l+  l+++e ++  k+ knwl + +++++ +dk   +  
  CCD26698.1 692 gikqsN--KkyNNNNNQSILTYIETSMKRIKHINSRCDKCHKQEVVEYERTIKNLPPVLSLEILLTKNE-WNTVKNaKNWLAKGFYATILKDK---AVI 784
                 775432..25689999*************************************************8776.34444446*************99...566 PP

                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
       UCH_1 259 keerekakaekeikvYeLqsvvvhigdskesghLvslvkvaekelerdppesqWylFNDflV 320
                 ++++ + k+++++++YeL+++v++i+d   + +Lv++++v + +l+      +Wy++ND+lV
  CCD26698.1 785 RSNAIDLKSNNQVFKYELNGYVARINDPAGELKLVTYARVFDYKLN----VFKWYMLNDYLV 842
                 6666668899******************99**********887553....44********98 PP

>> RNase_T  Exonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   1.2e-23   3.5e-20       1     165 []     920    1092 ..     920    1092 .. 0.94

  Alignments for each domain:
  == domain 1  score: 73.2 bits;  conditional E-value: 1.2e-23
                  EEEEEEESSSTT............CTTS-EEEEEEEEEETTCC...EEEEEEEEEEEHSSHCSSSHHHHHHHHHCHHHHHTCEBHHHHHHHHHHHHH CS
     RNase_T    1 vviDlEttglda............kekdeiieiaaisidggen...eigetfhfyvkptelakltdecteftgitqemldeapsfkevleefkellr 82  
                  v+iD+E++ l+             +++ + i++a++s+ +ge+    + +++++y+  t++  +++++t+++gi++ +ld+  s    ++  + ++r
  CCD26698.1  920 VAIDAEFVLLNDelseinckgaktIARSKRIALARVSVLRGEEselFGLPFIDDYIVTTDH--IENYLTRYSGIHPGDLDPLTSSRPLVM-RSVIYR 1013
                  89**********************889****************99999*************..***********************7655.89**** PP

                  HHTCCCETTTCEEEESSHHHHHHHHHHHHHHHHHCSEHCECHHHHHHHHHCHHHHHHHHHTTCHSSSS.TSSHHHHHHHHHHHH CS
     RNase_T   83 klallvahnaafdvgflraadkrilkkevpkrnqfldtlildkatlkelartsldklaeklgleedgr.aHrAldDaeataklf 165 
                  kl+ll + + +++vg++ ++d+++++++vp   q+ dt+ ++ +     ++ sl++la +l+  + ++  H++++Da++++ l+
  CCD26698.1 1014 KLWLLLQLG-CVFVGHGLYNDFKNININVP-SKQIRDTALYFLQG---KRYLSLRYLAFVLLGNNVQEgDHDSIEDAHTALILY 1092
                  *******99.********************.99999999996555...55669**************************99876 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.074   2.2e+02      36      70 ..     137     170 ..     127     173 .. 0.75
   2 ?   10.6   0.0   0.00018      0.53      47      88 ..     166     206 ..     159     209 .. 0.89
   3 ?   -1.7   0.0       1.2   3.6e+03      52      76 ..     269     293 ..     268     308 .. 0.78
   4 ?   -0.3   0.0      0.44   1.3e+03      39      67 ..     298     326 ..     290     334 .. 0.84

  Alignments for each domain:
  == domain 1  score: 2.2 bits;  conditional E-value: 0.074
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  +  s ++s+    +gk++  +y +++v+ll+++++
   CCD26698.1 137 NLASGITSIDL-TKGKFMSSGYYNSKVKLLKSNNK 170
                  55556666665.57****************99886 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00018
  ANAPC4_WD40  47 kpdgklLavaysdgevrlldaesgkvvhslsvksekavtclg 88 
                  k ++kl+ v+ + g++ l+d +s ++++s+s +s  ++++++
   CCD26698.1 166 KSNNKLITVGKESGSIDLYDPNSDHIIKSFSGHSA-TISSMD 206
                  6899**************************99998.588875 PP

  == domain 3  score: -1.7 bits;  conditional E-value: 1.2
  ANAPC4_WD40  52 lLavaysdgevrlldaesgkvvhsl 76 
                  +++va+s g+  ++d  + ++  ++
   CCD26698.1 269 VMVVATSSGSFDFIDLANPTMRTQY 293
                  799************9999888776 PP

  == domain 4  score: -0.3 bits;  conditional E-value: 0.44
  ANAPC4_WD40  39 sevrsLaWkpdgklLavaysdgevrllda 67 
                  +++++L  +p+g  L ++ s+  ++l + 
   CCD26698.1 298 QSIKDLTLSPNGDYLSIVESNDCLNLWNR 326
                  68999*************99998888765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0      0.12   3.5e+02       6      24 ..      65      86 ..      60      92 .. 0.70
   2 ?   -2.4   0.0       3.5   1.1e+04      13      36 ..     142     164 ..     128     164 .. 0.66
   3 ?    2.8   0.0     0.082   2.4e+02       4      28 ..     192     216 ..     190     234 .. 0.53
   4 ?    5.2   0.0     0.014        42       9      38 .]     294     325 ..     288     325 .. 0.79

  Alignments for each domain:
  == domain 1  score: 2.3 bits;  conditional E-value: 0.12
                EEESS.SS..EEEEEEETTSSE CS
        WD40  6 tltGH.ss..vtslafspdgaw 24
                 ++GH ++  v++l  ++dg +
  CCD26698.1 65 RFKGHiGGvaVNDLLSHRDGIL 86
                489**98867799955555543 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 3.5
                 EEEEEEETTSSEEEEEETTSEEEE CS
        WD40  13 vtslafspdgawlasGsdDgtvri 36 
                 +ts+     g++++sG ++ +v++
  CCD26698.1 142 ITSI-DLTKGKFMSSGYYNSKVKL 164
                 6666.3334566788877888775 PP

  == domain 3  score: 2.8 bits;  conditional E-value: 0.082
                 EEEEESS.SSEEEEEEETTSSEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasG 28 
                 +++++GH   ++s++++++ +++++G
  CCD26698.1 192 IKSFSGHsATISSMDVCDY-TLITAG 216
                 689****544777743322.334444 PP

  == domain 4  score: 5.2 bits;  conditional E-value: 0.014
                 SS..SSEEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40   9 GH..ssvtslafspdgawlasG.sdDgtvriWd 38 
                  H  +s+ +l  sp+g++l+   s +  + +W+
  CCD26698.1 294 VHpcQSIKDLTLSPNGDYLSIVeS-NDCLNLWN 325
                 57655699**********987766.88888887 PP

>> Peptidase_C28  Foot-and-mouth virus L-proteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.4e-05      0.22      30      81 ..     488     538 ..     474     555 .. 0.68

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 7.4e-05
  Peptidase_C28  30 eftlyngekkvfysr.pnnhdncwlnailqlfryvdepflewvydspenltle 81 
                    +f +  g +k  ys    + dn + nailql+r+v e + ++v  + ++  l+
     CCD26698.1 488 NFDF-RGFNKTSYSGlDTDIDNLYTNAILQLYRFVPEVY-NFVVGCLKDENLD 538
                    4543.455566666516788***************9976.4555554444444 PP

>> CDC37_M  Cdc37 Hsp90 binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3    0.0001      0.31      33     115 ..     654     732 ..     639     734 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.0001
     CDC37_M  33 lmeafdaqlegk.ekkakqvvhqslllqyireLaklnkeglknviklFfkkiktkshqakklFledveetynriktRakiikke 115
                 l ++f  qle + +++ + + +qs ++  +  L     + ++n+ik   kk++++++q+  ++ e   + +++i++R+   +k+
  CCD26698.1 654 LEQCFGFQLETNvNATCNDYERQSTIIPTLTVL-----SPARNGIKQSNKKYNNNNNQSILTYIETSMKRIKHINSRCDKCHKQ 732
                 557888888865145568889999999999999.....56669****************99*****************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1130 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       591  (0.0329634); expected 358.6 (0.02)
Passed bias filter:                      414  (0.0230911); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.77u 0.25s 00:00:01.02 Elapsed: 00:00:00.44
# Mc/sec: 7635.15
//
Query:       CCD26699.1  [L=455]
Description: hypothetical protein NDAI_0I01300 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      3e-10   39.8   6.0      6e-10   38.9   6.0    1.6  1  PHD       PHD-finger
  ------ inclusion threshold ------
       0.42   10.2   6.0       0.71    9.5   6.0    1.4  1  PHD_2     PHD-finger


Domain annotation for each model (and alignments):
>> PHD  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   6.0   6.7e-14     6e-10       1      51 [.      54     104 ..      54     105 .. 0.87

  Alignments for each domain:
  == domain 1  score: 38.9 bits;  conditional E-value: 6.7e-14
                 SBTTTTS...TTSTTSCEEEETTTSCEEETTTSSSTHSHHSHHSSTBSSTTTHT CS
         PHD   1 rCavCkk...ksdeeeelvqCdgCkrwfHqkClkppleseekpegewlCekCke 51 
                 rC +C+k    + +++  +qC++C+ w+H +C+++ ++ +++p ++++Ce Ck+
  CCD26699.1  54 RC-ICGKidlPDGDSGLYIQCEQCSVWQHGYCVGILEN-DNVP-DKYWCELCKP 104
                 69.****9887888*********************988.4444.48******97 PP

>> PHD_2  PHD-finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   6.0   7.9e-05      0.71       4      36 .]      70     103 ..      67     103 .. 0.84

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 7.9e-05
       PHD_2   4 llsCdkCsvaVHasCYGvskesdgee.WlCrrCe 36 
                  ++C +Csv  H  C G+ +++   + + C+ C+
  CCD26699.1  70 YIQCEQCSVWQHGYCVGILENDNVPDkYWCELCK 103
                 699**************987766544599****5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2288  (0.127614); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        55  (0.00306766); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.32s 00:00:01.13 Elapsed: 00:00:00.45
# Mc/sec: 3053.28
//
Query:       CCD26700.1  [L=277]
Description: hypothetical protein NDAI_0I01310 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    7.1e-13   48.2   0.0    1.6e-12   47.1   0.0    1.6  1  RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or RNP dom


Domain annotation for each model (and alignments):
>> RRM_1  RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   8.8e-17   1.6e-12       1      69 [.      48     117 ..      48     118 .. 0.97

  Alignments for each domain:
  == domain 1  score: 47.1 bits;  conditional E-value: 8.8e-17
                 EEEESETTTSSHHHHHHHHHTTSCEEEEEEEEE.TTTSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE CS
       RRM_1   1 lfVgnLppdvteeeLkelFskfGpiksiklvrd.etgkskgfafVeFeskedAekAlealngkklggrel 69 
                 ++VgnL+++++ee+++elFsk+G ik+i +  d  + ++ gf+f+ + s+ +A +Al+ l  +kl+++ +
  CCD26700.1  48 IYVGNLSFYTSEEQIYELFSKCGFIKRIIMGLDrFKFTPCGFCFIIYSSPNEALNALKYLSDTKLDDKHI 117
                 8********************************999999**************************99977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       372  (0.0207485); expected 358.6 (0.02)
Passed bias filter:                      296  (0.0165096); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.21s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2357.30
//
Query:       CCD26701.1  [L=409]
Description: hypothetical protein NDAI_0I01320 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.7e-19   69.4   0.8    4.7e-19   68.0   0.8    1.8  1  Homeobox_KN  Homeobox KN domain
    1.3e-05   24.9   0.1    1.3e-05   24.9   0.1    2.1  2  Homeodomain  Homeodomain


Domain annotation for each model (and alignments):
>> Homeobox_KN  Homeobox KN domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.8   5.2e-23   4.7e-19       1      40 []     323     362 ..     323     362 .. 1.00

  Alignments for each domain:
  == domain 1  score: 68.0 bits;  conditional E-value: 5.2e-23
  Homeobox_KN   1 WflahlhnPYPseedKeeLlkeTglsvkqitnWFINaRrR 40 
                  W+l+hl nPYP+ ++K+eLlk+Tgl++ q++nWFIN RrR
   CCD26701.1 323 WLLDHLTNPYPTTQEKKELLKQTGLTKIQLSNWFINVRRR 362
                  ***************************************9 PP

>> Homeodomain  Homeodomain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2      0.97   8.7e+03      26      41 ..      52      67 ..      46      68 .. 0.70
   2 !   24.9   0.1   1.5e-09   1.3e-05      21      54 ..     329     362 ..     310     363 .. 0.92

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 0.97
                 SHHHHHHHHHHHTS-H CS
  Homeodomain 26 saeereeLAkklgLee 41
                 ++e+ ++L+ ++ L++
   CCD26701.1 52 QQEQPQQLSPRVSLSK 67
                 5678888888888876 PP

  == domain 2  score: 24.9 bits;  conditional E-value: 1.5e-09
                  HSSS-SHHHHHHHHHHHTS-HHHHHHHHHHHHHH CS
  Homeodomain  21 enrypsaeereeLAkklgLeerqVkvWFqNrRak 54 
                   n+yp+++e++eL k++gL++ q ++WF N R +
   CCD26701.1 329 TNPYPTTQEKKELLKQTGLTKIQLSNWFINVRRR 362
                  59****************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1790  (0.0998383); expected 358.6 (0.02)
Passed bias filter:                      351  (0.0195772); expected 358.6 (0.02)
Passed Vit filter:                        23  (0.00128284); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.22s 00:00:00.71 Elapsed: 00:00:00.38
# Mc/sec: 3226.48
//
Query:       CCD26702.1  [L=501]
Description: hypothetical protein NDAI_0I01330 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.3e-58  193.7   0.3    1.3e-08   35.4   0.1    7.4  7  RCC1      Regulator of chromosome condensation (RCC1) repeat
      2e-38  129.4  18.1    4.1e-07   29.6   0.0    7.4  7  RCC1_2    Regulator of chromosome condensation (RCC1) repeat


Domain annotation for each model (and alignments):
>> RCC1  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     4e-08   0.00036       4      50 .]      58     109 ..      57     109 .. 0.88
   2 !   20.3   0.0   7.1e-08   0.00063       3      21 ..     114     134 ..     112     194 .. 0.56
   3 !   23.3   0.0   8.1e-09   7.3e-05       1      50 []     197     250 ..     197     250 .. 0.89
   4 !   31.1   0.0   3.1e-11   2.8e-07       2      50 .]     254     303 ..     253     303 .. 0.84
   5 !   30.7   0.0   4.1e-11   3.7e-07       6      50 .]     311     364 ..     306     364 .. 0.85
   6 !   22.5   0.0   1.4e-08   0.00013       1      50 []     367     428 ..     367     428 .. 0.74
   7 !   35.4   0.1   1.4e-12   1.3e-08       1      48 [.     431     481 ..     431     482 .. 0.95

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 4e-08
                 EEEEE--GGGTTSSSS-.--EEE..EEE-GGGTTS..-EEEEEEETTEEEEE CS
        RCC1   4 VysWGrndyGqLGlgtt.esvlv..Ptkveglsgn..rvvkvacGddhtval 50 
                 +++WG++ +  LG g+  +++ v  P++ ++l+ +  ++++ a G+ ht+al
  CCD26702.1  58 IFCWGSGPMCELGFGPLaKNKEVkrPRLNPFLPIDsvKIISFAVGGMHTIAL 109
                 8****************85554455****99998899*************97 PP

  == domain 2  score: 20.3 bits;  conditional E-value: 7.1e-08
                 EEEEEE--GGGTTSSSS-..- CS
        RCC1   3 rVysWGrndyGqLGlgtt..e 21 
                 +++sWG+nd G LG+ t+  +
  CCD26702.1 114 NIWSWGCNDVGALGRDTSgaK 134
                 79*************665432 PP

  == domain 3  score: 23.3 bits;  conditional E-value: 8.1e-09
                 TTEEEEEE..--GGGTTSS.SS-.--EEEEEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWG..rndyGqLGl.gtt.esvlvPtkveglsgnrvvkvacGddhtval 50 
                 +G+Vy+WG  r ++G LG  +++ + + +P kv+++s+  +v++a G dh+++l
  CCD26702.1 197 NGDVYAWGtfRCNEGILGFyQDQiKIQRTPWKVPNFSKYQIVQMAPGKDHVLFL 250
                 69********999******6555755578********99************986 PP

  == domain 4  score: 31.1 bits;  conditional E-value: 3.1e-11
                 TEEEEEE--GGGTTSSSS---EEE....EEE-GGGTTS-EEEEEEETTEEEEE CS
        RCC1   2 GrVysWGrndyGqLGlgttesvlv....PtkveglsgnrvvkvacGddhtval 50 
                 G V++WG+++++qLG++  e+  +    P+   gl+  +++ +a+G +h++a+
  CCD26702.1 254 GVVFAWGNGQQHQLGRKVMERFRLktldPRPF-GLK--HIKYIASGENHCFAI 303
                 89**************9997773334558777.666..9************98 PP

  == domain 5  score: 30.7 bits;  conditional E-value: 4.1e-11
                 EEE--GGGTTSSSS-....--EEEEEE-GGGTTS.....-EEEEEEETTEEEEE CS
        RCC1   6 sWGrndyGqLGlgtt....esvlvPtkveglsgn.....rvvkvacGddhtval 50 
                 sWG n++Gq+G   +      v vP+k+++  ++     +v+++++G +h++ l
  CCD26702.1 311 SWGLNQFGQCGVSEEvedgALVAVPRKIKFVGEDenkilNVKSISAGEHHSLIL 364
                 9***********888643333488****99988899***************975 PP

  == domain 6  score: 22.5 bits;  conditional E-value: 1.4e-08
                 TTEEEEEE--GGGTTSSSS-........--EEEEEE-GGGTTS....-EEEEEEETTEEEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgtt........esvlvPtkveglsgn....rvvkvacGddhtval 50 
                 dG +y++Gr d+   G+ ++        + +++P+ v+++++     +++ +a+G++h++a+
  CCD26702.1 367 DGTLYTFGRFDMFEIGIAKDklpeytyyDVHDKPRSVPLPTKLqdvpKFKNIAAGSHHSLAV 428
                 8****************555455444543334566666666556666*************96 PP

  == domain 7  score: 35.4 bits;  conditional E-value: 1.4e-12
                 TTEEEEEE--GGGTTSSSS-.--EEEEEE-GGGTTS..-EEEEEEETTEEE CS
        RCC1   1 dGrVysWGrndyGqLGlgtt.esvlvPtkveglsgn..rvvkvacGddhtv 48 
                 +G VysWG+++ +  Glg+  e+  +Pt++++   +  ++v + cG++++v
  CCD26702.1 431 NGIVYSWGFGETYAVGLGPAgEDIEIPTRIKNTATQdhNIVLIGCGGQFSV 481
                 589*****************9999******99988899***********97 PP

>> RCC1_2  Regulator of chromosome condensation (RCC1) repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1      0.03   2.7e+02      20      25 ..      58      63 ..      57      66 .. 0.83
   2 !   24.1   1.2   2.6e-09   2.3e-05       1      29 [.      96     124 ..      96     125 .. 0.95
   3 !   15.1   0.2   1.7e-06     0.015       4      24 ..     184     204 ..     181     210 .. 0.78
   4 !   14.6   0.0   2.5e-06     0.022       5      27 ..     241     263 ..     237     266 .. 0.82
   5 !   29.6   0.0   4.6e-11   4.1e-07       2      30 .]     291     319 ..     290     319 .. 0.95
   6 !   26.7   0.0   3.9e-10   3.5e-06       1      25 [.     351     375 ..     351     377 .. 0.97
   7 !   23.7   0.4   3.3e-09   2.9e-05       2      24 ..     416     438 ..     415     442 .. 0.94

  Alignments for each domain:
  == domain 1  score: 1.5 bits;  conditional E-value: 0.03
      RCC1_2 20 VlcWGs 25
                ++cWGs
  CCD26702.1 58 IFCWGS 63
                79***8 PP

  == domain 2  score: 24.1 bits;  conditional E-value: 2.6e-09
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGsNsdG 29 
                 ++s + G+ H++aL++++++++WG+N++G
  CCD26702.1  96 IISFAVGGMHTIALDDENNIWSWGCNDVG 124
                 789999*********************99 PP

  == domain 3  score: 15.1 bits;  conditional E-value: 1.7e-06
      RCC1_2   4 vsaGdyHscaLtedGeVlcWG 24 
                 + a d+ sc+L ++G+V++WG
  CCD26702.1 184 LGATDNLSCVLFSNGDVYAWG 204
                 55556669************* PP

  == domain 4  score: 14.6 bits;  conditional E-value: 2.5e-06
      RCC1_2   5 saGdyHscaLtedGeVlcWGsNs 27 
                 + G +H ++L+e G V++WG+  
  CCD26702.1 241 APGKDHVLFLDEAGVVFAWGNGQ 263
                 5588****************965 PP

  == domain 5  score: 29.6 bits;  conditional E-value: 4.6e-11
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcWGsNsdGQ 30 
                 k +++G +H +a+t d+++++WG N +GQ
  CCD26702.1 291 KYIASGENHCFAITKDNTIMSWGLNQFGQ 319
                 669*************************9 PP

  == domain 6  score: 26.7 bits;  conditional E-value: 3.9e-10
      RCC1_2   1 VksvsaGdyHscaLtedGeVlcWGs 25 
                 Vks+saG  Hs++L+edG+++++G+
  CCD26702.1 351 VKSISAGEHHSLILLEDGTLYTFGR 375
                 8***********************6 PP

  == domain 7  score: 23.7 bits;  conditional E-value: 3.3e-09
      RCC1_2   2 ksvsaGdyHscaLtedGeVlcWG 24 
                 k ++aG+ Hs+a+ ++G+V++WG
  CCD26702.1 416 KNIAAGSHHSLAVATNGIVYSWG 438
                 569*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       459  (0.025601); expected 358.6 (0.02)
Passed bias filter:                      430  (0.0239835); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.25s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 3871.11
//
Query:       CCD26703.1  [L=290]
Description: hypothetical protein NDAI_0I01340 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.1e-13   50.6   3.9    2.8e-13   50.2   3.9    1.2  1  Use1          Membrane fusion protein Use1
  ------ inclusion threshold ------
      0.077   13.2   0.2       0.16   12.2   0.2    1.5  1  Arteri_nsp7a  Arterivirus nonstructural protein 7 alpha
        0.3   10.6   4.4       0.42   10.1   4.4    1.1  1  DUF4657       Domain of unknown function (DUF4657)


Domain annotation for each model (and alignments):
>> Use1  Membrane fusion protein Use1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   3.9   4.7e-17   2.8e-13      35     247 .]      63     287 ..      40     287 .. 0.75

  Alignments for each domain:
  == domain 1  score: 50.2 bits;  conditional E-value: 4.7e-17
        Use1  35 leemleeLkkessk....pskevlkeYsekveaLkllleaeklssteekalanqllapg............eeskeekeeskereeaskelrqkekaky 117
                 l+    +Lk+++++    ++ +   eY +++e+  ++ ++e l+  e k ++ q  +++            +  + + e+++++ e ++e++ +   ++
  CCD26703.1  63 LQL---QLKQQQQQqrerQPLASYDEYLQRLEFQCSKDNYELLKILESKYKEVQESNRTrrysvdfdsangSDITASIENDNSKIENTEEIHDNDDHQH 158
                 333...444444333223555566677777777777778888887777777777777777778888877766667777888888888899998877777 PP

        Use1 118 q...kelrkellgkndsssspekekeskkkksdedldavlkkhenlqEklaeemlsLarnLKenslaasqiikkDtetlsksekaadqnlaslkkeser 213
                 +   + lr++llg + s++ +         ++d ++d+ ++ h n+q  l e+m +L+ +LK+ + a ++ + +D+++l + e  +    + l + s++
  CCD26703.1 159 DdgvTALRQRLLGRRLSNNGDA----LV-PENDSSADKQIENHDNMQQSLIEDMTKLVGSLKQGAVAFQTALDEDKKVLGAAEIGIQVASKGLVDISSK 252
                 6222467888888888664433....22.289******************************************************************* PP

        Use1 214 leehskskvkcllwlllfvvlvv.Fismvlfirif 247
                 l ++ k k   l+ +  f+ ++v  i   ++ir+f
  CCD26703.1 253 LRKYDKAKLGYLFYIGAFLFMIVgLIITFIIIRLF 287
                 ****9999888877765544443145555566665 PP

>> Arteri_nsp7a  Arterivirus nonstructural protein 7 alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   2.6e-05      0.16      10      76 ..      27      91 ..      25     102 .. 0.88

  Alignments for each domain:
  == domain 1  score: 12.2 bits;  conditional E-value: 2.6e-05
  Arteri_nsp7a 10 sdddleFlsklvdfkavvsAsnlrkalkdfiesayakaLraeLasvkavakakralAkLedFaegvs 76
                  sd++ +Fls +++ k +    ++r+  ++ ++++  ++L+ +L++ ++ ++ ++ lA+ +++++  +
    CCD26703.1 27 SDNEDAFLSYIINTKLIENLNHIRQ--DSIMNTHSTQQLQLQLKQQQQQQRERQPLASYDEYLQRLE 91
                  788889***********98888886..5677888999*************************98665 PP

>> DUF4657  Domain of unknown function (DUF4657)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   4.4   7.1e-05      0.42     143     269 ..      61     195 ..      55     209 .. 0.66

  Alignments for each domain:
  == domain 1  score: 10.1 bits;  conditional E-value: 7.1e-05
     DUF4657 143 qqLylqLqtqrppedpeeeesalapspspskapgsevq.gpkellsqtee...egaeaaspp..kvgvpsanpprLseapaepahtlpssqg.hk.rdl 233
                 qqL+lqL++q++++   +e + la++   ++  + + +  + ell+  e    e++e+  ++   v   san + ++ +  +   +++   + h   d 
  CCD26703.1  61 QQLQLQLKQQQQQQ---RERQPLASYDEYLQRLEFQCSkDNYELLKILESkykEVQESNRTRrySVDFDSANGSDITASIENDNSKIENTEEiHDnDDH 156
                 ********999988...5556677777777666655441445666655554556666655541168889999999998877766666655543541467 PP

     DUF4657 234 SHWdkVKvLLNRir.wrsprhpespappdgs..apries 269
                  H d V +L  R+  +r +++ +  +p++ s  +++ie 
  CCD26703.1 157 QHDDGVTALRQRLLgRRLSNNGDALVPENDSsaDKQIEN 195
                 899999999999752566667777777765422445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2040  (0.113782); expected 358.6 (0.02)
Passed bias filter:                      559  (0.0311785); expected 358.6 (0.02)
Passed Vit filter:                        46  (0.00256568); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.26s 00:00:00.73 Elapsed: 00:00:00.41
# Mc/sec: 2141.89
//
Query:       CCD26704.1  [L=1135]
Description: hypothetical protein NDAI_0I01350 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    6.8e-75  252.0   0.4    6.8e-75  252.0   0.4    1.7  2  SNF2_N         SNF2 family N-terminal domain
    5.6e-37  126.3   1.2    5.6e-37  126.3   1.2    4.4  4  SLIDE          SLIDE
    2.1e-28   99.3   4.0    2.1e-28   99.3   4.0    6.1  6  HAND           HAND
    1.1e-20   74.0   0.0      1e-19   70.9   0.0    2.8  2  Helicase_C     Helicase conserved C-terminal domain
    7.8e-10   39.0   0.0    7.8e-10   39.0   0.0    4.1  4  ResIII         Type III restriction enzyme, res subunit
    2.6e-05   24.1   0.0    7.3e-05   22.6   0.0    1.8  1  DEAD           DEAD/DEAH box helicase
    0.00095   18.4   0.3    0.00095   18.4   0.3    3.4  4  ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
  ------ inclusion threshold ------
      0.025   14.6   0.2       0.24   11.4   0.1    2.9  2  AAA_14         AAA domain


Domain annotation for each model (and alignments):
>> SNF2_N  SNF2 family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.0   0.4     3e-78   6.8e-75      50     349 ..     134     406 ..     109     407 .. 0.86
   2 ?   -3.9   0.3       1.9   4.2e+03     288     330 ..     550     589 ..     544     603 .. 0.45

  Alignments for each domain:
  == domain 1  score: 252.0 bits;  conditional E-value: 3e-78
                 HHHHTT--EEE---TTS--HHHHHHHHH...HHTTTS---.......S-EEEE--HHHHHHHHHHHHHH-TTS-EEE--SSHHHH-------------- CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N  50 eakqsvrGGiLaDemGLGKTvqvlalilaqrakeekdkekkrkdtlagptLivvPaslldqWeneierhvsssalrvlvyggqkkmkkkntkvapklla 148
                 +++ +   GiLaDemGLGKT+q++a++  +r+   +++       + gp+L+++P+s+l++W +ei++++++ +  vl +++q++ +      ++ l  
  CCD26704.1 134 SLHTNGIAGILADEMGLGKTLQTIAFLGYLRY---MEN-------INGPFLVIAPKSTLNNWLREINKWTPDVKAFVLQGDKQERAD---IIKDKLLTC 219
                 66788999********************5555...444.......559*************************99777777765322...334445678 PP

                 ---EEEE-HHHHHHHT......TTS-S-S-SEEEES-GGGT--TTSHHHHHHHH---S-EEEE-S--SSS-HHHHHHHHHHH-TTTT--HHHHHHHTHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 149 dydvvittYdvlsreaelqkkrsvlkqvewkrvvlDEghtlknstskaaeavskLstsnrwiltGTPiqnsledlygLlkfLreepfgekqtfdkllqr 247
                 d+d+v+ +Y++  re+       +lk+++w+++v+DE+h++kn++s ++++++++ ++nr+++tGTP+qn+l++l++Ll+fL +++f++ q fd++++ 
  CCD26704.1 220 DFDIVVASYEITIREK------AALKKMNWQYIVIDEAHRIKNEESLLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDSQDFDDWFSS 312
                 9************999......9***************************************************************************9 PP

                 HHH.HHHHHHHHHHHTT-STTEE---GGGT--S---EEEEEEEEE--HHHHHHHH....................HHHHHH-HHH-HHHHHHHHHHHHH CS
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 248 pie.aqaekgrsrLlqllqrlmlrrakkdveknlPpkteeiiflklskverksYnrllevlrkkalakllkrseaalkssskskekilelllelrqacn 345
                 +   + ++k +++L+++lq+++lrr+k+dve +l pk+e  +++ +s++++k+Y+++le+    +  + ++         ++sk+++l+++++lr++cn
  CCD26704.1 313 ETSeEDQDKVVKQLHTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQKKWYKQILEKDLDAVNGSNPN---------KESKTRLLNIVMQLRKCCN 402
                 98747778889********************************************4443333222222222.........223366************* PP

                 ---X CS
                 xxxx RF
      SNF2_N 346 hpql 349
                 hp+l
  CCD26704.1 403 HPYL 406
                 **98 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 1.9
                 EEEE--HHHHHHHH....................HHHHHH-HH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
      SNF2_N 288 iflklskverksYnrllevlrkkalakllkrseaalksssksk 330
                 +f+  ++ve+k+ +r+ ++lr + l    ++++ +lk++++++
  CCD26704.1 550 RFVTNNSVEEKILERATQKLRLDQLV---IQQKKTLKKENRKE 589
                 55555666666666555444444332...22233344444333 PP

>> SLIDE  SLIDE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   1.0       1.9   4.4e+03      44      62 ..      74      92 ..      43     116 .. 0.51
   2 ?   -1.0   0.3      0.79   1.8e+03      21      64 ..     559     598 ..     551     604 .. 0.58
   3 ?    2.6   0.5     0.057   1.3e+02      16      82 ..     777     844 ..     766     848 .. 0.78
   4 !  126.3   1.2   2.5e-40   5.6e-37       1     113 [.     868     983 ..     868     984 .. 0.99

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 1.9
       SLIDE 44 psnkgkkeyteeeDrfllv 62
                +s+k++++ + eeD+ ll 
  CCD26704.1 74 NSQKKRRKTEREEDAELLK 92
                2333333347777777775 PP

  == domain 2  score: -1.0 bits;  conditional E-value: 0.79
       SLIDE  21 kellkkkveqyknplqelkikyppsnkgkkeyteeeDrfllvll 64 
                 +++l++ +++++  l++l i+++ + k+++  ++e   +ll ++
  CCD26704.1 559 EKILERATQKLR--LDQLVIQQKKTLKKEN--RKEAKDALLSMI 598
                 455555555533..5777777755555544..555555566655 PP

  == domain 3  score: 2.6 bits;  conditional E-value: 0.057
       SLIDE  16 klkelkellkkkveqyknplqelk..ikyppsnkgkkeyteeeDrfllvllakyGygnyekikkeires 82 
                 ++k + +llk+ +++ ++pl+e +   k++ ++kg +++++ e r  ++l  kyG ++ + i  e+ + 
  CCD26704.1 777 EMKDKLKLLKESIDK-AQPLTEEEekSKQELEAKGFSNWNKTEFRKFITLSGKYGRNSIQAIATELAQT 844
                 556666778888877.6666665522455589999999***********************99998775 PP

  == domain 4  score: 126.3 bits;  conditional E-value: 2.5e-40
       SLIDE   1 ekiikqIekgekkieklkelkellkkkveqyknplqelkikyppsnkgkkeyteeeDrfllvllakyGygn...yekikkeiresplFrfDwflksrtp 96 
                 +k++k Ie+ e+k++klk ++e+l+ kv++yknpl el++k+ppsn++k++++eeeDrfll++l+ky +g+   y+ i++eir+sp F++D+f++srtp
  CCD26704.1 868 DKYVKLIEADEEKLKKLKLQQEALRLKVSKYKNPLFELTLKHPPSNSNKRTFSEEEDRFLLITLSKYDLGRddlYDMIRDEIRDSPFFELDFFFQSRTP 966
                 79*******************************************************************9999************************** PP

       SLIDE  97 qelqkRcetLlklveke 113
                  el++R+ tLl+++eke
  CCD26704.1 967 LELARRAFTLLQCIEKE 983
                 ****************9 PP

>> HAND  HAND
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   6.4         1   2.3e+03      74     106 ..      65     101 ..      40     106 .. 0.59
   2 ?   -3.4   0.1       7.3   1.6e+04      48      69 ..     233     253 ..     229     267 .. 0.52
   3 ?    0.5   1.7      0.44   9.9e+02      51     105 ..     540     591 ..     527     597 .. 0.65
   4 !   99.3   4.0   9.4e-32   2.1e-28       1     111 []     703     810 ..     703     810 .. 0.94
   5 ?   -4.2   0.2         8   1.8e+04      78      87 ..     879     888 ..     865     906 .. 0.57
   6 ?  -17.6  25.7         8   1.8e+04      69     105 ..    1036    1072 ..    1011    1124 .. 0.69

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1
                 .....STTCHHHHHHHHHHHCT--SSS-CCHHHHHHH CS
        HAND  74 e....keeereekrkeeqekidnaepLteeeeeekee 106
                 +    +++++++k++ + e+ ++ae L eee e  e+
  CCD26704.1  65 NndddSKKKNSQKKRRKTEREEDAELLKEEEIETTED 101
                 0333334455555555566667788888888777665 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 7.3
                 HHHHHHHHCCT----CCCHTTT CS
        HAND  48 kEqlaykKkigykvtlddkkee 69 
                 +E++a kK +++++ + d+ + 
  CCD26704.1 233 REKAALKK-MNWQYIVIDEAHR 253
                 56666554.4555554444333 PP

  == domain 3  score: 0.5 bits;  conditional E-value: 0.44
                 HHHHHCCT----CCCHTTTS-SS.STTCHHHHHHHHHHHCT--SSS-CCHHHHHH CS
        HAND  51 laykKkigykvtlddkkeeeeeeekeeereekrkeeqekidnaepLteeeeeeke 105
                 +  kK+++    +++++ ee+     e +++k +++q  i++ + L  e+++e +
  CCD26704.1 540 IGQKKQVKVFRFVTNNSVEEK---ILERATQKLRLDQLVIQQKKTLKKENRKEAK 591
                 455666655444444444443...3468999***************999987643 PP

  == domain 4  score: 99.3 bits;  conditional E-value: 9.4e-32
                 XXXXXXXXXXXX..X----.--S--------GGC--S--CCHHHHHHHHHHHHHHCCT----CCCHTTTS-SS.STTCHHHHHHHHHHHCT--SSS-CC CS
        HAND   1 SvDkYYkdvlktgskkstkkpkapraPKqiniqdfqffpkeLkeLqekEqlaykKkigykvtlddkkeeeeeeekeeereekrkeeqekidnaepLtee 99 
                 S+D+YY+dvl+t++     +p +pr+PK   ++++q+ ++ L+eL+ek++++++Kk++y +tldd+k ++ e+ +++e ++k k+ +e+id+a+pLtee
  CCD26704.1 703 SIDNYYRDVLTTKKA---VTPLQPRMPKPKVFYSHQLHSPLLNELYEKDRMWIAKKTKYVPTLDDVKVTYGEDLTNAEMKDKLKLLKESIDKAQPLTEE 798
                 9*********99433...459*************************************************556689*********************** PP

                 HHHHHHHHHHHS CS
        HAND 100 eeeekeellseg 111
                 ee+ k+el+++g
  CCD26704.1 799 EEKSKQELEAKG 810
                 ********9886 PP

  == domain 5  score: -4.2 bits;  conditional E-value: 8
                 CHHHHHHHHH CS
        HAND  78 ereekrkeeq 87 
                 e+ +k k++q
  CCD26704.1 879 EKLKKLKLQQ 888
                 2222333332 PP

  == domain 6  score: -17.6 bits;  conditional E-value: 8
                  TS-SS.....STTCHHHHHHHHHHHCT--SSS-CCHHHHHH CS
        HAND   69 eeeeee....keeereekrkeeqekidnaepLteeeeeeke 105 
                  +    +    +e+e+++  + +qe  ++ ++ tee++e  +
  CCD26704.1 1036 K----DiaisEEKETTTAAEDKQEIMEDKQEVTEENQEAHR 1072
                  2....123335566666677777777788888888877654 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       2.5   5.5e+03      33      73 ..     184     227 ..     157     232 .. 0.65
   2 !   70.9   0.0   4.5e-23     1e-19       2     111 .]     428     541 ..     427     541 .. 0.91

  Alignments for each domain:
  == domain 1  score: -2.3 bits;  conditional E-value: 2.5
                 HHHHHHT....TSTEEEESTTSTHHHHHHHHHHHH.TTSSSEEEES CS
  Helicase_C  33 klllekk....gikvavlhgelpqnereeileqfn.kgesdvLiat 73 
                 ++l+e +    ++k+ vl+g   ++er +i+++     ++d+++a+
  CCD26704.1 184 NWLREINkwtpDVKAFVLQG--DKQERADIIKDKLlTCDFDIVVAS 227
                 44433333456789999999..677888887766547888888887 PP

  == domain 2  score: 70.9 bits;  conditional E-value: 4.5e-23
                 HHHHHHHHH.HHTTTTSEEEEEESSHHHHHH.HHHHHHHT..TSTEEEESTTSTHHHHHHHHHHHH...TTSSSEEEESGGGTSSSTSTTESEEEESSS CS
  Helicase_C   2 kleallell.kleeeggkilifvntidrlek.vklllekk..gikvavlhgelpqnereeileqfn...kgesdvLiatdvaerGidipkvnlVinfdl 93 
                 kl+ l +ll k++eeg+++lif++  + l+   ++    +  g+k+++++g++ +++r+++++++n   ++++ +L++t++++ Gi+++++++V+ +d 
  CCD26704.1 428 KLKVLDKLLkKMKEEGSRVLIFSQMSRVLDIlEDYC---FfrGYKYCRIDGSTDHEDRIKSIDDYNspdSDKFIFLLTTRAGGLGINLTSADVVVLYDS 523
                 788999999999***************996543333...2469***********************88778888************************* PP

                 SSSHHHHHHHHTTSSSTT CS
  Helicase_C  94 prnvtsyiqriGRtgRag 111
                 ++n++   q+++R++R+g
  CCD26704.1 524 DWNPQADLQAMDRAHRIG 541
                 ****************97 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.7       2.2   4.9e+03      75      93 ..      44      77 ..      28     104 .. 0.50
   2 !   39.0   0.0   3.5e-13   7.8e-10       3     169 ..     120     280 ..     118     282 .. 0.77
   3 ?    0.8   0.2      0.19   4.2e+02      45     112 ..     534     599 ..     529     639 .. 0.62
   4 ?    1.4   3.1      0.12   2.7e+02      80     147 ..     996    1076 ..     959    1101 .. 0.66

  Alignments for each domain:
  == domain 1  score: -2.6 bits;  conditional E-value: 2.2
                GGGTGG...................GEEEESSS- CS
      ResIII 75 kkflseayke...............igkkvsgdk 93
                k+f+++++++                +kk++++k
  CCD26704.1 44 KHFIENKAQKdekfakvltilnnddDSKKKNSQK 77
                4444444444333333221111112222222222 PP

  == domain 2  score: 39.0 bits;  conditional E-value: 3.5e-13
                 EE-HHHHHHHHHHT......TTSEEEEEESTTSTHHHHHHHHHHHH-S......-EEEEESSHHHHHHHHHHGGGGTGG.....GEEEESSS-B--... CS
      ResIII   3 elreyQeeaienlleklkskrdkrglikmaTGtGKTlvaaklierllkkgkee.kflflvprkslleqtleefkkflseayke.igkkvsgdkkka.ke 98 
                 elr+yQ++ ++ l+ +l+ ++   g+++ + G GKTl  +++  +l+  ++++  fl+++p+ +l + +l+e++k++++ +++  +++++++ +++  +
  CCD26704.1 120 ELRPYQIQGLNWLV-SLH-TNGIAGILADEMGLGKTLQTIAFLGYLRYMENINgPFLVIAPKSTL-NNWLREINKWTPDVKAFvLQGDKQERADIIkDK 215
                 79******998776.776.7889**************9988877777666666699999998887.67999*******997655444444444444333 PP

                 .....-SEEEEEHHHHHHTH........HHHTTT-SEEEEETGGGTTS.T.TTHHHHHT---SEEEEEESS- CS
      ResIII  99 kdstnkkilvttiqsldadseeeeeeseellrdrfdviiiDEaHrlgakk.swreilekfkeavllglTATp 169
                   + + +i+v++++   +++         l++ + ++i+iDEaHr++ ++    ++l+ f +  +l +T+Tp
  CCD26704.1 216 LLTCDFDIVVASYEITIREK-------AALKKMNWQYIVIDEAHRIKNEEsLLSQVLREFTSRNRLLITGTP 280
                 34456667777766655555.......888999999***********98536778*****99999999***9 PP

  == domain 3  score: 0.8 bits;  conditional E-value: 0.19
                 HHHH-S.......-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--.......-SEEEEEHH CS
      ResIII  45 ierllkkgkee..kflflvprkslleqtleefkkflseaykeigkkvsgdkkkakekdstnkkilvttiq 112
                 ++r ++ g+++  k++ +v ++s+ e+ le+ ++ l  ++  i++k++ +k+++    ++ k+ l++ iq
  CCD26704.1 534 MDRAHRIGQKKqvKVFRFVTNNSVEEKILERATQKLRLDQLVIQQKKTLKKENR----KEAKDALLSMIQ 599
                 555555555445588888888888888887777766666554333333332222....334444444444 PP

  == domain 4  score: 1.4 bits;  conditional E-value: 0.12
                  G....GEEEESSS-B--.......-SEEEEEHHHHHHTH.....................HHHTTT-SEEEEETGGGTTS. CS
      ResIII   80 eaykeigkkvsgdkkkakekdstnkkilvttiqsldadseee.............eeeseellrdrfdviiiDEaHrlgak 147 
                  ++ k+++++++g ++++k ++   kki +t  q+++++ +++             e ++e ++++++    + EaHr+ ++
  CCD26704.1  996 KKPKAVKGEKRGPSNDNKDRKPAIKKIKLTMNQKISNEGKKDiaiseeketttaaEDKQEIMEDKQEVTEENQEAHRTVGE 1076
                  233335555555555556677888899999999999999888998886555555322222233333334556777777664 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.3e-08   7.3e-05      18     168 ..     143     279 ..     123     288 .. 0.69

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 3.3e-08
                 EEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEET..TSSHHHHHHHH.HTTCSEEEEEHHHHHHHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxx.xxxxxxxxxxxxxxxxxxx RF
        DEAD  18 lvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliig..gvaardqlskl.dngvdivvgtpgrlddlls 113
                 ++a e G GKTl  +  +    y   ++ +   l+++P   L ++ l++++k++  ++  + ++ g  +++a+  ++kl  ++ divv+  +  ++  +
  CCD26704.1 143 ILADEMGLGKTLQTIAFLGYLRYM--ENINGPFLVIAPKSTL-NNWLREINKWTPDVK--AFVLQGdkQERADIIKDKLlTCDFDIVVASYEITIR--E 234
                 677889*****9855444444443..5666689*****9998.678999999999655..44444421333333344442578********99998..6 PP

                 CTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESS CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD 114 tgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSAT 168
                 +  l+  + +++V+DEa+r+ ++  +  ++++l+++         +r+ ++++ T
  CCD26704.1 235 KAALKKMNWQYIVIDEAHRIKNE--ESLLSQVLREF--------TSRNRLLITGT 279
                 6777788889**********998..77777777777........23335555555 PP

>> ERCC3_RAD25_C  ERCC3/RAD25/XPB C-terminal helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   1.1       1.3   2.8e+03     222     239 ..      64      81 ..      21     106 .. 0.53
   2 !   18.4   0.3   4.2e-07   0.00095      39     137 ..     422     527 ..     416     599 .. 0.80
   3 ?   -1.8   0.3      0.64   1.4e+03     203     239 ..     769     805 ..     756     815 .. 0.70
   4 ?   -5.2   4.9       7.2   1.6e+04     208     240 ..    1046    1078 ..    1009    1105 .. 0.55

  Alignments for each domain:
  == domain 1  score: -2.7 bits;  conditional E-value: 1.3
  ERCC3_RAD25_C 222 vlaakdeeaeeeelekel 239
                      +++d+++++ ++++++
     CCD26704.1  64 LNNDDDSKKKNSQKKRRK 81 
                    222222222222222221 PP

  == domain 2  score: 18.4 bits;  conditional E-value: 4.2e-07
  ERCC3_RAD25_C  39 yvmnpnkfracefLikyhekrgDkiivfsDn...vfaLkeyakklkkpy..iyGetseaerlkilqkfkknpkvntifl..skvgDtsiDlPeanv 127
                    +v n+ k+++++ L+k  ++ g ++++fs     +  L++y     ++y  i G+t++++r+k ++++++ ++ + ifl   + g   i+l +a v
     CCD26704.1 422 LVYNSAKLKVLDKLLKKMKEEGSRVLIFSQMsrvLDILEDYCFFRGYKYcrIDGSTDHEDRIKSIDDYNSPDSDKFIFLltTRAGGLGINLTSADV 517
                    689*************************9852213357788876555554499****************999989888744789999********* PP

  ERCC3_RAD25_C 128 liqisshfgs 137
                    ++  +s+   
     CCD26704.1 518 VVLYDSDWNP 527
                    9988776653 PP

  == domain 3  score: -1.8 bits;  conditional E-value: 0.64
  ERCC3_RAD25_C 203 eeeelaystkeeqkellqkvlaakdeeaeeeelekel 239
                      e+l+ ++ +++ +ll++ + +++  +eeee++k++
     CCD26704.1 769 YGEDLTNAEMKDKLKLLKESIDKAQPLTEEEEKSKQE 805
                    44678889999999***99888877666665554443 PP

  == domain 4  score: -5.2 bits;  conditional E-value: 7.2
  ERCC3_RAD25_C  208 aystkeeqkellqkvlaakdeeaeeeelekelk 240 
                     + + +e+++e++++ ++ ++e++e +++  e++
     CCD26704.1 1046 TTTAAEDKQEIMEDKQEVTEENQEAHRTVGETN 1078
                     333344445555555444444444443332222 PP

>> AAA_14  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   0.00011      0.24      60     104 ..     238     283 ..     186     292 .. 0.76
   2 ?   -2.5   0.0       2.2   4.9e+03      77     105 ..     588     615 ..     553     630 .. 0.78

  Alignments for each domain:
  == domain 1  score: 11.4 bits;  conditional E-value: 0.00011
      AAA_14  60 lkeekktylflDEiqevpewekalkslvdeg.knldvivtGSnskl 104
                 lk+ + +y+++DE++++++ e+ l ++++e  ++ ++++tG  +++
  CCD26704.1 238 LKKMNWQYIVIDEAHRIKNEESLLSQVLREFtSRNRLLITGTPLQN 283
                 23346689********************988756699***986665 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.2
      AAA_14  77 pewekalkslvdegknldvivtGSnskll 105
                 +e+++al s++++g   d++++ S ++  
  CCD26704.1 588 KEAKDALLSMIQHG-AADIFMSASTASSS 615
                 67888888888888.77888888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2239  (0.124881); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        77  (0.00429472); expected 17.9 (0.001)
Passed Fwd filter:                        25  (0.00139439); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 1.00u 0.30s 00:00:01.30 Elapsed: 00:00:00.47
# Mc/sec: 7312.48
//
Query:       CCD26705.1  [L=345]
Description: hypothetical protein NDAI_0I01360 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-19   70.3  20.0      8e-05   23.3   0.6    5.9  6  WD40         WD domain, G-beta repeat
    1.1e-11   44.8   1.2     0.0079   16.5   0.0    3.5  3  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    7.5e-05   21.8   0.6        4.6    6.1   0.0    4.0  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p
  ------ inclusion threshold ------
      0.017   15.2   0.0        1.8    8.7   0.0    3.5  4  YmzC         YmzC-like protein


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1     7e-07    0.0032       8      37 ..       9      39 ..       3      40 .. 0.87
   2 !   20.4   0.6   1.5e-07   0.00066       2      37 ..      49      87 ..      48      88 .. 0.79
   3 ?    3.1   0.0     0.045     2e+02      11      37 ..     112     140 ..     101     141 .. 0.65
   4 ?   -2.0   0.1       1.8   7.9e+03      15      24 ..     173     182 ..     167     196 .. 0.61
   5 !   15.7   0.0   4.5e-06      0.02       3      37 ..     207     246 ..     205     247 .. 0.82
   6 !   23.3   0.6   1.8e-08     8e-05       7      38 .]     296     328 ..     290     328 .. 0.82

  Alignments for each domain:
  == domain 1  score: 18.3 bits;  conditional E-value: 7e-07
                ESSSS.EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  8 tGHss.vtslafspdgawlasGsdDgtvriW 37
                +GH + v+++ ++ +g+ +a++s D++++++
  CCD26705.1  9 SGHEDlVHDVVYDFYGRHVATCSSDQHIKVF 39
                5**6679***************88*****97 PP

  == domain 2  score: 20.4 bits;  conditional E-value: 1.5e-07
                EEEEEEESS.SSEEEEE..EETTSSEEEEEETTSEEEEE CS
        WD40  2 qclrtltGH.ssvtsla..fspdgawlasGsdDgtvriW 37
                q+  ++++H ss+ sl+   + +g+ ++s+s+D+t+++W
  CCD26705.1 49 QLSDSWKAHdSSIVSLDwaSPEYGRIIVSASYDKTIKLW 87
                6677899**88899**66566666669999********* PP

  == domain 3  score: 3.1 bits;  conditional E-value: 0.045
                 SSEEEEEEETTSSEE.EEE.ETTSEEEEE CS
        WD40  11 ssvtslafspdgawl.asG.sdDgtvriW 37 
                 +s ++++f p +  l +s+ + Dg +ri+
  CCD26705.1 112 GSLYCVKFAPPHLGLkISCiGNDGVLRIY 140
                 4478886555555555778878*****98 PP

  == domain 4  score: -2.0 bits;  conditional E-value: 1.8
                 EEEEETTSSE CS
        WD40  15 slafspdgaw 24 
                 +l+++p+++ 
  CCD26705.1 173 CLSWCPSHSS 182
                 7777776654 PP

  == domain 5  score: 15.7 bits;  conditional E-value: 4.5e-06
                 EEEEEESSSS.EEEEEEETTSSE..........EEEEETTSEEEEE CS
        WD40   3 clrtltGHss.vtslafspdgaw..........lasGsdDgtvriW 37 
                  + +l GH++ ++s+      +w          +a+G++Dg++ri+
  CCD26705.1 207 VVAKLNGHKGlIRSI------SWapsigrwyqlIATGCKDGKLRIF 246
                 577899**8889***......66666666799899**********8 PP

  == domain 6  score: 23.3 bits;  conditional E-value: 1.8e-08
                 EESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   7 ltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                  + H s ++s++++  g+ l+s++dDg+vr+W+
  CCD26705.1 296 HDDHkSEIWSVSWNLTGTILSSAGDDGKVRLWK 328
                 4457445**************999********6 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.1   0.00027       1.2      11      66 ..      28      88 ..      26     131 .. 0.87
   2 !   16.5   0.0   1.8e-06    0.0079       2      71 ..     175     252 ..     174     274 .. 0.73
   3 !   15.9   0.0   2.6e-06     0.012      33      69 ..     295     331 ..     280     344 .. 0.85

  Alignments for each domain:
  == domain 1  score: 9.5 bits;  conditional E-value: 0.00027
  ANAPC4_WD40 11 AlatedgellvfRlng.qrvwtl..eedkedsevrsLaWk..pdgklLavaysdgevrlld 66
                 A  ++d+++ vf l+     w+l  + +++ds++ sL W   + g++++ a  d +++l +
   CCD26705.1 28 ATCSSDQHIKVFKLDKdTSEWQLsdSWKAHDSSIVSLDWAspEYGRIIVSASYDKTIKLWE 88
                 7789999*******873567999777789**********833479************9976 PP

  == domain 2  score: 16.5 bits;  conditional E-value: 1.8e-06
  ANAPC4_WD40   2 swcpt...mDLiAlatedgellvfRlng...qrvwtleedkedsevrsLaWkpd.g...klLavaysdgevrlldaesgk 71 
                  swcp+    + +A+   d+ l+ +R +    q v +l  +++++ +rs++W p+ g   +l+a +++dg++r++++ ++ 
   CCD26705.1 175 SWCPShssTEKLAVCALDQALIYQRGKDgklQVVAKL--NGHKGLIRSISWAPSiGrwyQLIATGCKDGKLRIFKVTEKL 252
                  7888522246788888888888888755233555555..899**********985333379*************997654 PP

  == domain 3  score: 15.9 bits;  conditional E-value: 2.6e-06
  ANAPC4_WD40  33 eedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  e+d+++se+ s++W+  g++L  a +dg+vrl ++  
   CCD26705.1 295 EHDDHKSEIWSVSWNLTGTILSSAGDDGKVRLWKSTY 331
                  568999**************************98754 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.6    0.0025        11     190     239 ..      15      63 ..       7      91 .. 0.75
   2 !    4.2   0.0    0.0039        18      64     153 ..     110     201 ..      99     218 .. 0.66
   3 ?    1.0   0.0     0.036   1.6e+02     202     218 ..     234     250 ..     231     261 .. 0.84
   4 !    6.1   0.0     0.001       4.6     183     219 ..     295     332 ..     271     340 .. 0.75

  Alignments for each domain:
  == domain 1  score: 4.9 bits;  conditional E-value: 0.0025
    Ge1_WD40 190 iveaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGksls 239
                 + + ++   G  +at+s+d  +k f++  +d++e +    Wk hd   +s
  CCD26705.1  15 VHDVVYDFYGRHVATCSSDQHIKVFKLD-KDTSEWQLSDSWKAHDSSIVS 63 
                 556666677999*************986.46667778899*****65443 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0039
    Ge1_WD40  64 lkgevldlafahvs.skillavdekgslfvykveeve..skllvslllkv.eapietvvsesdrviWCPyipeedaeesdddeaskllvltrgd 153
                  kg++  ++fa  +   ++ ++ + g l +y+  e +  +       +kv   p ++++++   ++WCP  +++++        ++ l++ rg+
  CCD26705.1 110 SKGSLYCVKFAPPHlGLKISCIGNDGVLRIYEALEPSdlRSWALTSEIKVlPVPPANHLQSDFCLSWCPSHSSTEKL--AVCALDQALIYQRGK 201
                 56666666666443134688999999999998655442433444444565577899999999*******87766643..344455666666665 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.036
    Ge1_WD40 202 latasedGevkffqvyl 218
                 +at ++dG+++ f+v  
  CCD26705.1 234 IATGCKDGKLRIFKVTE 250
                 89***********9965 PP

  == domain 4  score: 6.1 bits;  conditional E-value: 0.001
    Ge1_WD40 183 kieeh.sliveaafspdGtalatasedGevkffqvyle 219
                 + ++h s+i + ++   Gt l+ a  dG+v++++   +
  CCD26705.1 295 EHDDHkSEIWSVSWNLTGTILSSAGDDGKVRLWKSTYS 332
                 445553699999999******************86554 PP

>> YmzC  YmzC-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00039       1.8      32      50 ..      32      50 ..      21      57 .. 0.81
   2 ?   -0.8   0.0      0.36   1.6e+03      32      47 ..      80      95 ..      76      97 .. 0.85
   3 ?    1.0   0.0       0.1   4.6e+02      31      47 ..     238     254 ..     236     256 .. 0.86
   4 ?   -1.7   0.0      0.69   3.1e+03      44      58 .]     320     334 ..     319     334 .. 0.85

  Alignments for each domain:
  == domain 1  score: 8.7 bits;  conditional E-value: 0.00039
                ETTEEEEEEEETTTTEEEE CS
        YmzC 32 kDdeikiykfdedenEvkL 50
                 D++ik++k d d+ E +L
  CCD26705.1 32 SDQHIKVFKLDKDTSEWQL 50
                6899************888 PP

  == domain 2  score: -0.8 bits;  conditional E-value: 0.36
                ETTEEEEEEEETTTTE CS
        YmzC 32 kDdeikiykfdedenE 47
                 D  ik ++ ++d+ E
  CCD26705.1 80 YDKTIKLWEENPDQEE 95
                5899********9998 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.1
                 EETTEEEEEEEETTTTE CS
        YmzC  31 vkDdeikiykfdedenE 47 
                  kD++ +i+k  e+  E
  CCD26705.1 238 CKDGKLRIFKVTEKLSE 254
                 59********9998766 PP

  == domain 4  score: -1.7 bits;  conditional E-value: 0.69
                 TTTEEEEEEEEEHHH CS
        YmzC  44 denEvkLiKefyadE 58 
                 d + v+L K  y +E
  CCD26705.1 320 DDGKVRLWKSTYSNE 334
                 567899999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       373  (0.0208043); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        22  (0.00122706); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.25s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 2478.64
//
Query:       CCD26706.1  [L=218]
Description: hypothetical protein NDAI_0I01370 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.8e-37  127.2   0.2    7.4e-37  126.8   0.2    1.1  1  HD_3            HD domain
    1.6e-09   37.8   0.7      2e-09   37.4   0.7    1.2  1  HD_2            HD containing hydrolase-like enzyme
    5.1e-05   23.5   0.0    8.6e-05   22.8   0.0    1.4  1  HD              HD domain
  ------ inclusion threshold ------
       0.09   12.8   0.2         18    5.5   0.2    2.5  2  Unstab_antitox  Putative addiction module component


Domain annotation for each model (and alignments):
>> HD_3  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.2   1.7e-40   7.4e-37       4     162 ..      36     193 ..      33     196 .. 0.92

  Alignments for each domain:
  == domain 1  score: 126.8 bits;  conditional E-value: 1.7e-40
        HD_3   4 LKfqkRqgwlqtgrvreesvaeHmwrvalmalllseelkekvdiarvikmfLiHDlvEiltgDiispdelakeekeeeekeaaerilkllpee....la 98 
                 LK qkR+gw+++g++++es+++Hm+r+ +m++l+++     v+++++++ +L+HD++E+l+gDi+++d ++keek+ +e e+ +++++ l +      a
  CCD26706.1  36 LKLQKRTGWINNGITNAESISDHMYRMGVMSMLIKNPN---VNRDKCVRISLVHDIAESLVGDITPMDPMTKEEKHHREFETVKYLANELIKPyneiAA 131
                 9*********************************7655...9****************************************99999998777667688 PP

        HD_3  99 eellalweEFeeretkeakfakdlDklepllqalekegdslaafeaklsqvygvsskelaeale 162
                 +e+ + w  +e++   e+k++kdlDk+e+l+q +e+e++++ +   +l+q+yg ++ + +e+++
  CCD26706.1 132 KEIIEDWLTYENGIGLEGKYTKDLDKYEMLIQCFEYEQQYNGEK--NLDQFYGCANVIQTEEIK 193
                 ****************************************9966..999**9997777666655 PP

>> HD_2  HD containing hydrolase-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.7   4.5e-13     2e-09       2     151 ..      29     174 ..      28     212 .. 0.76

  Alignments for each domain:
  == domain 1  score: 37.4 bits;  conditional E-value: 4.5e-13
        HD_2   2 FfallsrlkyieRwalmrn..treenvaeHslevaliahalalienkkfggkldaerlallalyHDasEiitGDlptpvKyanpeireaykevEeeaee 98 
                 F+++ + lk+ +R +  +n  t+ e++++H +++ +++   +li+n     +++ ++++ ++l+HD++E ++GD+ tp+   +p  +e+ ++ E e+ +
  CCD26706.1  29 FLSITQLLKLQKRTGWINNgiTNAESISDHMYRMGVMS---MLIKNP----NVNRDKCVRISLVHDIAESLVGDI-TPM---DPMTKEEKHHREFETVK 116
                 778888889999988888866999********998876...578885....59*********************8.554...66777777777778888 PP

        HD_2  99 kllelLpeelreeyeelladeeaeee.....ekklvkaaDklsalikcleelkagnke 151
                 +l ++L + ++e  ++ + ++  + e     e+k+ k  Dk + li+c+e +++ n e
  CCD26706.1 117 YLANELIKPYNEIAAKEIIEDWLTYEngiglEGKYTKDLDKYEMLIQCFEYEQQYNGE 174
                 8888888888777666553333322234555*******************99998876 PP

>> HD  HD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.9e-08   8.6e-05       4     121 ..      58     160 ..      47     174 .. 0.68

  Alignments for each domain:
  == domain 1  score: 22.8 bits;  conditional E-value: 1.9e-08
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTS..HHHHHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH CS
          HD   4 HsleVaklarrlaedlgeeedrellllaaLlHDiGkgpfgdafekkeeefekflaHekvgaeilrevekrlgldledvaklirehheswegkkrprgla 102
                 H++++  ++  + +  +   +r++++ + L HDi++ ++gd    ++ ++e+ +  e+++++ l ++++ +         +++e  e+w         +
  CCD26706.1  58 HMYRMGVMSMLIKN-PN--VNRDKCVRISLVHDIAESLVGDITPMDPMTKEEKHHREFETVKYLANELIKP-----YNEIAAKEIIEDWL-------TY 141
                 55555555544443.55..9********************9555555556666667888888888887777.....23333344444444.......23 PP

                 CCTSCHHHHHHHHHHHHHH CS
          HD 103 erqlslearivklaDrlaa 121
                 e  + le +  k++D++++
  CCD26706.1 142 ENGIGLEGKYTKDLDKYEM 160
                 4455566666666666664 PP

>> Unstab_antitox  Putative addiction module component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0    0.0077        34       7      36 ..      81     109 ..      80     113 .. 0.77
   2 ?    5.5   0.2    0.0039        18      23      41 ..     189     207 ..     184     210 .. 0.84

  Alignments for each domain:
  == domain 1  score: 4.6 bits;  conditional E-value: 0.0077
  Unstab_antitox   7 RleLaedLwdSLdeeadpelpaawkaEler 36 
                     R+ L+ d+ +SL  +  p ++   k+E + 
      CCD26706.1  81 RISLVHDIAESLVGDITP-MDPMTKEEKHH 109
                     999**********96666.77666666555 PP

  == domain 2  score: 5.5 bits;  conditional E-value: 0.0039
  Unstab_antitox  23 dpelpaawkaElerRlaey 41 
                      +e+ ++ k+ le+R+a +
      CCD26706.1 189 TEEIKQWTKDLLEEREAYF 207
                     578************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       625  (0.0348597); expected 358.6 (0.02)
Passed bias filter:                      323  (0.0180155); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 1626.55
//
Query:       CCD26707.1  [L=149]
Description: hypothetical protein NDAI_0I01380 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.7e-22   78.8   0.2    8.3e-22   78.2   0.0    1.3  1  Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27


Domain annotation for each model (and alignments):
>> Ribosomal_L27A  Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   4.6e-26   8.3e-22       3     127 ..      28     146 ..      26     147 .. 0.85

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 4.6e-26
                     GGTSSTTTTTTTTT-..S--........S--.........---..GGG..---.....EEEEHHHHHHTTTTGTTS--......----EEEGGGT CS
  Ribosomal_L27A   3 ktgGrGhkGqkkrsg..vkk.kpg.feGGqmplyrrlpkrGfk..nskfkkey.....kvvnlkdLdelideerlela......deaeeidleel 80 
                     ++gGrG++G +++++  ++k +pg f  G++         G++  +    k++     +v+nl++L++li+ee++++       ++a++id  + 
      CCD26707.1  28 HPGGRGMAGGMQHHRanMDKyHPGyF--GKV---------GMRyfH----KQQghfwkPVLNLDKLWTLIPEEKRDEYlkssskSAAPVIDTLAA 107
                     78***********99999999**999..***.........988432....33334677***************9983346877667888888888 PP

                     TTTSSS....SE.EEE--S---..--EEEESEE-HHHHHHHHHTT-EEE CS
  Ribosomal_L27A  81 aeaglikkkdgv.Kvlgkgeltk.klkvkaskfSkkAkekIeaaGGkve 127
                               g+ Kvlgkg++++ +++vka+ +Sk A+ekI+aaGG +e
      CCD26707.1 108 ----------GYgKVLGKGRIPNvPVIVKARFVSKLAEEKIKAAGGVIE 146
                     ..........***********9857*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       316  (0.0176251); expected 358.6 (0.02)
Passed bias filter:                      277  (0.0154498); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 1124.30
//
Query:       CCD26708.1  [L=482]
Description: hypothetical protein NDAI_0I01390 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.1e-81  272.8  11.9    6.7e-81  272.4  11.9    1.0  1  Sugar_tr  Sugar (and other) transporter
    3.7e-23   82.0  20.9    7.2e-19   67.9   5.3    2.1  2  MFS_1     Major Facilitator Superfamily
    2.5e-06   26.2   0.4    6.4e-06   24.9   0.4    1.6  1  TRI12     Fungal trichothecene efflux pump (TRI12)
    0.00021   20.7   0.9    0.00049   19.5   0.9    1.5  1  MFS_4     Uncharacterised MFS-type transporter YbfB
  ------ inclusion threshold ------
        2.2    8.6  11.3       0.93    9.8   1.1    4.2  5  Ost5      Oligosaccharyltransferase subunit 5


Domain annotation for each model (and alignments):
>> Sugar_tr  Sugar (and other) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.4  11.9   1.9e-84   6.7e-81       2     444 ..      12     473 ..      11     479 .. 0.93

  Alignments for each domain:
  == domain 1  score: 272.4 bits;  conditional E-value: 1.9e-84
                 HHHHHHHHHHHHHHHHCGGGTHHHHHHHHTSTT--SHHHHHH.................HHHHHHHTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH CS
    Sugar_tr   2 alvaalggllfgYdtgvigafltllkfaknfglsksksskee..............ssvlsglivsiflvGaiiGslfagllgdrfGRkkslliaavlf 86 
                 +lv +lg+++fg+++g++++++++l+  ++f+  ++  ++e+               + ++g++ +if +G+++Gs+f+g ++dr+GR+ + l  ++l 
  CCD26708.1  12 ILVSCLGSIQFGFHLGILNVPSEILS-CSEFKIPNELLPYEDtwlgshnfkqcipmDDEQLGILNAIFCLGGLFGSYFVGDFADRYGRRCASLYNCFLG 109
                 678999********************.6677777777767768******************************************************** PP

                 HHHHHHHH-TTTTSS-TGGGGGHHHHHHHHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHHHCCHHHHHHHH CS
    Sugar_tr  87 vigavlqaaakgknsvevlivgRvlvGigvGlasvlvPmyisEiApkklRgalvslyqlaitfGilvaaifglglnktsnadgwrillglqlvpallll 185
                 + +++l + +     ++ l+ gR+l+G+++G+  v++P+y +E++p+++ g+l +l+q+++ +Gil+++i+gl ++++     wr+ ++  ++++ll +
  CCD26708.1 110 ILASLLLFSSG---GFQSLLWGRFLMGVSCGVMIVISPLYSKEVTPAAWKGILDVLNQVSVKAGILFTQIIGLTFDDSYR---WRWIFFTGAMLSLLNM 202
                 *******9999...9**************************************************************999...**************** PP

                 HHGGGS---HHHHHHTT-HHHHHHHHHH.HHHC.HHHHHHHHHHHHHHHHHHH......................HTTHHHHSH....HHHHHHHHHHH CS
    Sugar_tr 186 illlflPESPrylvekgkeeeakevlak.lrge.edadrelaeekdsleaeqeee.................kaswkellsskt.vrqrlligvvlqif 264
                 +++l +++SPr+l++kg ++++++vl + l g+ ++a++ ++e+ ++ e + +++                   s+ ++l++ + ++ +  i++ l ++
  CCD26708.1 203 FMWLRVDDSPRWLFSKGFRKDTERVLFElLGGTyDEAKKIVDEWTREAELQANMNnidnnggsnsnsslisgPSSMWQYLRN-DiYKNPRRIIAILLVG 300
                 ****************************755556777777888888877777777889999977777666664444444444.25999*********** PP

                 HHHTTHHHHHHHTTTHHHHSS-THHHHHHHHHHHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHH..HHHHTTSS...CHHHHHHHHHHHHHH CS
    Sugar_tr 265 qqltGinaimyysptifenlglsksllvtiivgvvnfvatfvaiflvdrfGRRtllllGaagmaicfvilgivalllvakskaasivaivfialfialf 363
                 qql+Gin++++y+ +++++++ + s++++i+++ ++ ++tf    ++  + R++ll++++++ +i  ++++  + + ++k      ++++ i+l+ + +
  CCD26708.1 301 QQLCGINSLIFYGIRVINQVDPKHSIQINILLSLTTLLITFLTSIMIAILNRKPLLIISTIVIIISSLFMS--VGINENK----PLLLTINIFLYSIGY 393
                 **********************************************************************9..6666666....89************* PP

                 HTTTTHHHHHHHHHHSHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT-HHHHHHHHHHHHHHHHHHHHS--STT-- CS
    Sugar_tr 364 algwgpvpwvlvsElfpqsvRskalaiavavnwlanflisllfpiiteaigggyvflvfaglavlfiifvfffvpetkgrt 444
                 a+g+gp+p+v+++E++++   + ++ + +a nw+ +++++++fp++ + +  g v+ +fa++ +l +  ++ +vpetk+++
  CCD26708.1 394 AIGLGPLPFVIMQEVSTPVDQKMGTKYGTAWNWIGSMIVGYIFPVLYDILV-GHVYTIFAIVSILLACHIYQGVPETKNKK 473
                 ***************************************************.**************************975 PP

>> MFS_1  Major Facilitator Superfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   5.3     2e-22   7.2e-19      28     189 ..      59     264 ..      11     320 .. 0.71
   2 !   19.7   7.7   8.9e-08   0.00032      40     166 ..     331     460 ..     320     478 .. 0.83

  Alignments for each domain:
  == domain 1  score: 67.9 bits;  conditional E-value: 2e-22
       MFS_1  28 g......ispseigllltlyalgaavaslplGrlsdrfGrrr.vlllglllfalglllllfa.sslwlllvlrvlqGlgagalfpagaaliadwfpkee 118
                 +      ++  ++g+l +++ lg +++s+++G ++dr+Grr    l   +l +l+  lllf+  ++  ll++r+l+G+ +g+++ ++  +  +++p   
  CCD26708.1  59 NfkqcipMDDEQLGILNAIFCLGGLFGSYFVGDFADRYGRRCaS-LYNCFLGILA-SLLLFSsGGFQSLLWGRFLMGVSCGVMIVISPLYSKEVTPAAW 155
                 155555577889**************************999844.4444444444.344445356669*****************************99 PP

       MFS_1 119 rgraigllsagfslGailgpllggllasslgWravfyilaivsllafvlfllllpeepperkrkspkeee............................. 188
                 +g    l ++++ +G++++ ++g  + +s+ Wr++f+  a +sll +    ++l++++++r+ +s+  ++                             
  CCD26708.1 156 KGILDVLNQVSVKAGILFTQIIGLTFDDSYRWRWIFFTGAMLSLLNMF---MWLRVDDSPRWLFSKGFRKdtervlfellggtydeakkivdewtreae 251
                 99999*****************************************88...999999999999999888777777777777776666666665555555 PP

       MFS_1 189 ............k 189
                              
  CCD26708.1 252 lqanmnnidnngG 264
                 5555544444332 PP

  == domain 2  score: 19.7 bits;  conditional E-value: 8.9e-08
       MFS_1  40 lyalgaavaslplGrlsdrfGrrrvlllglllfalglllllfa..sslw.lllvlrvlqGlga.galfpagaaliadwfpkeergraigllsagfslGa 134
                 l +l++++ +++++ ++  + r+++l+++ ++ ++++l+++++   + + ll +  +l ++g+  +l p+  +++ +++++ ++ +++ + +a + +G+
  CCD26708.1 331 LLSLTTLLITFLTSIMIAILNRKPLLIISTIVIIISSLFMSVGinENKPlLLTINIFLYSIGYaIGLGPLPFVIMQEVSTPVDQKMGTKYGTAWNWIGS 429
                 5678899999999*******9999************777775467777779************4456799999999*********************** PP

       MFS_1 135 ilgpllggllasslgWravfyilaivsllafv 166
                 ++   + ++l++ l    v+ i+aivs+l++ 
  CCD26708.1 430 MIVGYIFPVLYDIL-VGHVYTIFAIVSILLAC 460
                 ***********777.66799999999999944 PP

>> TRI12  Fungal trichothecene efflux pump (TRI12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.4   1.8e-09   6.4e-06      78     216 ..      69     205 ..      57     234 .. 0.77

  Alignments for each domain:
  == domain 1  score: 24.9 bits;  conditional E-value: 1.8e-09
       TRI12  78 ensslfstlwttgqavsilvmgrltdrfgrrpfvilthilglvgaivgctatkfntllaamtllgvaagpa.gasplfvgelmsnktkflgllivsipv 175
                 e+ +++ +++ +g       +g ++dr+grr   +    lg++ +++  ++  f++ll    l+gv++g     spl+  e+      + g+l v   v
  CCD26708.1  69 EQLGILNAIFCLGGLFGSYFVGDFADRYGRRCASLYNCFLGILASLLLFSSGGFQSLLWGRFLMGVSCGVMiVISPLYSKEVTPAA--WKGILDVLNQV 165
                 56688899999999999999*************************************************86268*******98765..55777776666 PP

       TRI12 176 vvtsgl..spylgqrlaiqgswrwifyiyiitsaiavllivvw 216
                  v +g+  +  +g  +     wrwif+   ++s + + +   w
  CCD26708.1 166 SVKAGIlfTQIIGLTFDDSYRWRWIFFTGAMLSLLNMFM---W 205
                 6666542256677777777889****9988877665443...3 PP

>> MFS_4  Uncharacterised MFS-type transporter YbfB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.9   1.4e-07   0.00049      27     164 ..      68     204 ..      62     220 .. 0.69

  Alignments for each domain:
  == domain 1  score: 19.5 bits;  conditional E-value: 1.4e-07
       MFS_4  27 lsqagllaaaNylGYLvGallaafalsagaeRlr.llagllatvllllamalt...esfaaflliRflaGvasAvvlvfgsslvlahaaaarrervgal 121
                   q+g+l+a+  lG L G+ +        a R +   a+l  ++l +la+ l+    +f  +l  Rfl Gv+ +v++v+    + + + aa ++++  l
  CCD26708.1  68 DEQLGILNAIFCLGGLFGSYFV----GDFADRYGrRCASLYNCFLGILASLLLfssGGFQSLLWGRFLMGVSCGVMIVISPLYSKEVTPAAWKGILDVL 162
                 5799***************976....333334432357788888888888765222456777777******8887666666666666677888899999 PP

       MFS_4 122 lfaGvGlGiavsgllvllllqlglsasslWl..alavlsavllll 164
                     v +Gi+ + ++   +l+++ s  + W+    a+ls++ + +
  CCD26708.1 163 NQVSVKAGILFTQII---GLTFDDSYRWRWIffTGAMLSLLNMFM 204
                 999*******99865...445555555555500556666554433 PP

>> Ost5  Oligosaccharyltransferase subunit 5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.084     3e+02      42      60 ..       6      24 ..       3      28 .. 0.90
   2 ?    0.7   0.0      0.18   6.4e+02      25      58 ..      83     116 ..      65     128 .. 0.61
   3 ?    9.8   1.1   0.00026      0.93      12      62 ..     325     374 ..     318     375 .. 0.62
   4 ?   -2.5   0.0       1.8   6.4e+03      22      59 ..     395     433 ..     386     449 .. 0.60
   5 ?   -1.3   0.1      0.75   2.7e+03      17      44 ..     449     475 ..     435     478 .. 0.57

  Alignments for each domain:
  == domain 1  score: 1.8 bits;  conditional E-value: 0.084
        Ost5 42 rslvkelllalvASlflGf 60
                ++l+  +l++ ++S+ +Gf
  CCD26708.1  6 KNLLACILVSCLGSIQFGF 24
                689999************9 PP

  == domain 2  score: 0.7 bits;  conditional E-value: 0.18
        Ost5  25 lltalfflyevtstkkkrs..lvkelllalvASlfl 58 
                 l+ ++f+   + + ++ r    +   +l+++ASl+l
  CCD26708.1  83 LFGSYFVGD-F-ADRYGRRcaSLYNCFLGILASLLL 116
                 344444222.2.333444445777888999999875 PP

  == domain 3  score: 9.8 bits;  conditional E-value: 0.00026
        Ost5  12 qptlafvllligllltalfflyevtstkkkrs..lvkelllalvASlflGfGv 62 
                    + ++l l++ll+t+l  +  +     +r+  l+  +++ +++Slf+ +G+
  CCD26708.1 325 SIQINILLSLTTLLITFLTSIMIAIL---NRKplLIISTIVIIISSLFMSVGI 374
                 44555555555555555554432222...23335****************996 PP

  == domain 4  score: -2.5 bits;  conditional E-value: 1.8
        Ost5  22 igllltalfflyevtstkkkrs.lvkelllalvASlflG 59 
                 igl  + + +++ev++   ++      ++   ++S+ +G
  CCD26708.1 395 IGLGPLPFVIMQEVSTPVDQKMgTKYGTAWNWIGSMIVG 433
                 555555566666676665555544444555555555555 PP

  == domain 5  score: -1.3 bits;  conditional E-value: 0.75
        Ost5  17 fvllligllltalfflyevtstkkkrsl 44 
                 +++ ++++ll+ + + + v +tk+k+s+
  CCD26708.1 449 TIFAIVSILLA-CHIYQGVPETKNKKSF 475
                 34444444443.3335555577777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       872  (0.0486363); expected 358.6 (0.02)
Passed bias filter:                      384  (0.0214178); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         7  (0.000390429); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.56u 0.24s 00:00:00.80 Elapsed: 00:00:00.40
# Mc/sec: 3638.20
//
Query:       CCD26709.1  [L=147]
Description: hypothetical protein NDAI_0I01400 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.6e-14   51.6   1.0    1.1e-09   38.6   0.5    2.3  2  EF-hand_7   EF-hand domain pair
    1.2e-10   41.0   2.3    5.8e-08   32.5   0.5    3.1  3  EF-hand_8   EF-hand domain pair
    5.2e-10   38.4   6.7     0.0003   20.5   0.1    3.7  3  EF-hand_6   EF-hand domain
    1.1e-09   37.1   7.6    0.00081   18.8   0.1    3.7  4  EF-hand_1   EF hand
    3.2e-07   30.6   0.0     0.0018   18.6   0.0    2.3  2  EF-hand_9   EF-hand domain
     0.0044   17.9   0.0     0.0078   17.1   0.0    1.4  1  EF-hand_11  EF-hand domain
     0.0048   17.2   0.1        1.3    9.5   0.0    2.2  2  EF-hand_14  EF-hand domain
  ------ inclusion threshold ------
      0.016   14.7   7.4        4.3    7.0   0.3    3.6  3  EF-hand_5   EF hand
       0.14   12.1   0.6       0.78    9.7   0.1    2.0  2  EF-hand_4   Cytoskeletal-regulatory complex EF hand
       0.41   10.9   3.3        3.5    7.9   0.5    2.7  2  PhetRS_B1   Phe-tRNA synthetase beta subunit B1 domain


Domain annotation for each model (and alignments):
>> EF-hand_7  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00017      0.31       5      36 ..       9      51 ..       6      84 .. 0.68
   2 !   38.6   0.5   5.9e-13   1.1e-09       5      67 ..      85     141 ..      81     144 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 0.00017
   EF-hand_7  5 keaFkelDtdgdgyldkeellrllrkifqga...........g 36
                k++F ++D+ g g ++ke + ++lr+i  +            g
  CCD26709.1  9 KDIFTLFDKKGQGAISKELFGDYLRAIGYNPtnqqvndilinG 51
                789**********************665554555555555431 PP

  == domain 2  score: 38.6 bits;  conditional E-value: 5.9e-13
   EF-hand_7   5 keaFkelDtdgdgyldkeellrllrkifqgagegsklsdeelellfkefDtdkdGvisfdEFl 67 
                   aF+ +D+ ++g++++ +++ +l+      g g+kl+dee+++l+k +  d+dG+i++  F 
  CCD26709.1  85 IKAFQVFDKENTGKVSVGDIRYMLT------GLGEKLTDEEVDELLKGIEIDGDGQIDYRKFI 141
                 568******************9999......***************************98776 PP

>> EF-hand_8  EF-hand domain pair
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0034       6.2      30      47 ..      10      27 ..       8      34 .. 0.86
   2 ?    2.5   0.0     0.073   1.3e+02       2      32 ..      20      48 ..      19      51 .. 0.84
   3 !   32.5   0.5   3.3e-11   5.8e-08       2      54 ..      96     146 ..      95     147 .] 0.93

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0034
   EF-hand_8 30 ilfrefDtdgdGkisfeE 47
                ++f +fD +g G+is+e 
  CCD26709.1 10 DIFTLFDKKGQGAISKEL 27
                69*************985 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.073
   EF-hand_8  2 kgkItreelrrilrilglkkglseeevdilf 32
                +g I++e + + lr++g++   ++++v +++
  CCD26709.1 20 QGAISKELFGDYLRAIGYN--PTNQQVNDIL 48
                5889999999988999***..9999987764 PP

  == domain 3  score: 32.5 bits;  conditional E-value: 3.3e-11
   EF-hand_8   2 kgkItreelrrilrilglkkglseeevdilfrefDtdgdGkisfeEFcvller 54 
                 +gk+++ + r +l+ lg k  l++eevd+l++ + +dgdG i++  F++ + r
  CCD26709.1  96 TGKVSVGDIRYMLTGLGEK--LTDEEVDELLKGIEIDGDGQIDYRKFIEDVLR 146
                 79*********99988988..**************************998876 PP

>> EF-hand_6  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3   1.8e-05     0.032       3      31 .]       9      36 ..       8      36 .. 0.92
   2 !   20.5   0.1   1.7e-07    0.0003       2      31 .]      84     112 ..      83     112 .. 0.91
   3 !    5.7   0.1    0.0091        16      12      27 ..     130     146 ..     119     147 .] 0.75

  Alignments for each domain:
  == domain 1  score: 14.2 bits;  conditional E-value: 1.8e-05
   EF-hand_6  3 reaFklfDkdgdGkidaeElrkalrkalg 31
                +++F lfDk g G i++e + + lr a g
  CCD26709.1  9 KDIFTLFDKKGQGAISKELFGDYLR-AIG 36
                589*********************9.765 PP

  == domain 2  score: 20.5 bits;  conditional E-value: 1.7e-07
   EF-hand_6   2 lreaFklfDkdgdGkidaeElrkalrkalg 31 
                 + +aF+ fDk+++Gk++  ++r +l+  lg
  CCD26709.1  84 FIKAFQVFDKENTGKVSVGDIRYMLT-GLG 112
                 889**********************9.665 PP

  == domain 3  score: 5.7 bits;  conditional E-value: 0.0091
   EF-hand_6  12 dgdGkidaeElrk.alr 27 
                 dgdG+id+  ++  +lr
  CCD26709.1 130 DGDGQIDYRKFIEdVLR 146
                 9******9998543665 PP

>> EF-hand_1  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   8.8e-05      0.16       3      26 ..       9      32 ..       9      35 .. 0.83
   2 ?   -2.5   0.0       2.8     5e+03       8      17 ..      72      81 ..      71      82 .. 0.79
   3 !   18.8   0.1   4.5e-07   0.00081       2      28 ..      84     110 ..      83     111 .. 0.91
   4 !    9.1   0.8   0.00056         1       1      23 [.     119     141 ..     119     144 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.6 bits;  conditional E-value: 8.8e-05
                HHHHHHHTTTSSSEEEHHHHHHHH CS
   EF-hand_1  3 keiFrefDkDgdGkIdfeEfkell 26
                k+iF +fDk g G I++e f ++l
  CCD26709.1  9 KDIFTLFDKKGQGAISKELFGDYL 32
                68**************98666555 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 2.8
                HHTTTSSSEE CS
   EF-hand_1  8 efDkDgdGkI 17
                e+D   +Gk+
  CCD26709.1 72 ELDATTNGKV 81
                6788889998 PP

  == domain 3  score: 18.8 bits;  conditional E-value: 4.5e-07
                 HHHHHHHHTTTSSSEEEHHHHHHHHHH CS
   EF-hand_1   2 lkeiFrefDkDgdGkIdfeEfkellkk 28 
                 + ++F++fDk ++Gk++  + + +l+ 
  CCD26709.1  84 FIKAFQVFDKENTGKVSVGDIRYMLTG 110
                 789*******************99975 PP

  == domain 4  score: 9.1 bits;  conditional E-value: 0.00056
                 HHHHHHHHHTTTSSSEEEHHHHH CS
   EF-hand_1   1 elkeiFrefDkDgdGkIdfeEfk 23 
                 e++e+ + +  DgdG+Id+  f+
  CCD26709.1 119 EVDELLKGIEIDGDGQIDYRKFI 141
                 67888888889*******98776 PP

>> EF-hand_9  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00056         1       3      38 ..      11      45 ..       9      50 .. 0.87
   2 !   18.6   0.0   9.9e-07    0.0018       3      55 ..      87     137 ..      86     146 .. 0.82

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00056
   EF-hand_9  3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLe 38
                +F ++D +  G +      dyLra +  +p++ +++
  CCD26709.1 11 IFTLFDKKGQGAISKELFGDYLRAIGY-NPTNQQVN 45
                8*************9999********9.78877766 PP

  == domain 2  score: 18.6 bits;  conditional E-value: 9.9e-07
   EF-hand_9   3 vFevcDtqktGrVpvsrlidyLravtaqdpeeseLeelakelDPdgedasvdl 55 
                  F+v+D + tG+V v ++  +L   ++ + ++ e++el k +  dg  +++d 
  CCD26709.1  87 AFQVFDKENTGKVSVGDIRYMLTGLGE-KLTDEEVDELLKGIEIDGD-GQIDY 137
                 5************************99.8889999999986665555.55555 PP

>> EF-hand_11  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.4e-06    0.0078      20      80 ..      82     142 ..      67     146 .. 0.90

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 4.4e-06
                 HHHHHHHHHH-TT-SSEE-HHHHHHHHHHHT----HHHHHHHHHTS-B-TTS-EEHHHHHH CS
  EF-hand_11  20 haivqefenfdtlksntvsreefraictrrvqiltdeqfdrlwselpvnakgrlkyqdfls 80 
                    ++ f+ fd  ++  vs  ++r + t   + ltde+ d l + + ++  g++ y+ f+ 
  CCD26709.1  82 EDFIKAFQVFDKENTGKVSVGDIRYMLTGLGEKLTDEEVDELLKGIEIDGDGQIDYRKFIE 142
                 567889***************************************************9985 PP

>> EF-hand_14  EF-hand domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0089        16       5      45 ..      11      51 ..       8      80 .. 0.76
   2 !    9.5   0.0    0.0007       1.3       3      46 ..      83     128 ..      81     144 .. 0.86

  Alignments for each domain:
  == domain 1  score: 5.9 bits;  conditional E-value: 0.0089
  EF-hand_14  5 lfdlfkdeetdklsvakllkaLaetGirkdDpRLkellkkl 45
                +f+lf++++++ +s + + + L++ G + +   ++++l + 
  CCD26709.1 11 IFTLFDKKGQGAISKELFGDYLRAIGYNPTNQQVNDILING 51
                9*************************988888777777654 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.0007
  EF-hand_14   3 dll..fdlfkdeetdklsvakllkaLaetGirkdDpRLkellkklk 46 
                 d++  f++f++e+t+k+sv ++  +L   G + +D  ++ellk ++
  CCD26709.1  83 DFIkaFQVFDKENTGKVSVGDIRYMLTGLGEKLTDEEVDELLKGIE 128
                 555559************************9999999999998775 PP

>> EF-hand_5  EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.3    0.0024       4.3       2      19 ..       9      26 ..       8      26 .. 0.92
   2 ?    4.5   0.1     0.015        26       3      17 ..      86     100 ..      84     104 .. 0.78
   3 ?    5.9   0.2    0.0052       9.3       8      17 ..     127     136 ..     120     138 .. 0.82

  Alignments for each domain:
  == domain 1  score: 7.0 bits;  conditional E-value: 0.0024
                HHHHHHH-SS-SSCE-HH CS
   EF-hand_5  2 kdtFqaiDlNgDGkIske 19
                kd F  +D+ g G Iske
  CCD26709.1  9 KDIFTLFDKKGQGAISKE 26
                57999***********98 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.015
                 HHHHHH-SS-SSCE- CS
   EF-hand_5   3 dtFqaiDlNgDGkIs 17 
                 ++Fq +D+ + Gk+s
  CCD26709.1  86 KAFQVFDKENTGKVS 100
                 45*****98877777 PP

  == domain 3  score: 5.9 bits;  conditional E-value: 0.0052
                 H-SS-SSCE- CS
   EF-hand_5   8 iDlNgDGkIs 17 
                 i  +gDG+I+
  CCD26709.1 127 IEIDGDGQID 136
                 567******9 PP

>> EF-hand_4  Cytoskeletal-regulatory complex EF hand
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1      0.12   2.1e+02      27      69 ..      40      88 ..      26     104 .. 0.59
   2 ?    9.7   0.1   0.00044      0.78      14      66 ..      86     141 ..      74     145 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.9 bits;  conditional E-value: 0.12
   EF-hand_4 27 tgdkvapvlknskleed.klekiwdl.....adidedgkldfeefciam 69
                t+++v  +l n + +++  le+i +l     a++d   +   e+f+ a 
  CCD26709.1 40 TNQQVNDILINGNASSSlTLEQISELvqanqAELDATTNGKVEDFIKAF 88
                5667777776655443324555555511122445555555556665555 PP

  == domain 2  score: 9.7 bits;  conditional E-value: 0.00044
   EF-hand_4  14 eifsglkped.nkltgdkvapvlk..nskleedklekiwdladidedgkldfeefc 66 
                 + f+  ++e+  k++   +  +l     kl++++++++ +  +id dg++d+ +f+
  CCD26709.1  86 KAFQVFDKENtGKVSVGDIRYMLTglGEKLTDEEVDELLKGIEIDGDGQIDYRKFI 141
                 44444444331456666666666522579***********************9996 PP

>> PhetRS_B1  Phe-tRNA synthetase beta subunit B1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.047        85      16      57 ..      54      98 ..      38     108 .. 0.67
   2 ?    7.9   0.5     0.002       3.5       9      37 ..     105     131 ..      98     139 .. 0.85

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.047
   PhetRS_B1 16 gkelteeeledllfefGlElDeiveeee...kkkadkkseeviyk 57
                  +lt e++++l+     ElD  ++ +     k+ +   +e++ k
  CCD26709.1 54 SSSLTLEQISELVQANQAELDATTNGKVedfIKAFQVFDKENTGK 98
                46789999*************999888733322333444444555 PP

  == domain 2  score: 7.9 bits;  conditional E-value: 0.002
   PhetRS_B1   9 eaLfkalgkelteeeledllfefGlElDe 37 
                 +++++ lg++lt+ee+++ll   G+E+D 
  CCD26709.1 105 RYMLTGLGEKLTDEEVDELLK--GIEIDG 131
                 567889*************97..999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       783  (0.0436723); expected 358.6 (0.02)
Passed bias filter:                      590  (0.0329076); expected 358.6 (0.02)
Passed Vit filter:                        59  (0.00329076); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.36
# Mc/sec: 1219.29
//
Query:       CCD26710.1  [L=643]
Description: hypothetical protein NDAI_0I01410 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   14.7   0.2      0.095   12.9   0.1    2.0  2  DASH_Dad1  DASH complex subunit Dad1


Domain annotation for each model (and alignments):
>> DASH_Dad1  DASH complex subunit Dad1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   5.3e-06     0.095      23      49 ..     378     404 ..     367     407 .. 0.89
   2 ?   -3.3   0.0      0.61   1.1e+04       4      19 ..     566     581 ..     565     582 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.9 bits;  conditional E-value: 5.3e-06
   DASH_Dad1  23 nlnaLNRsLEeviavgkeFesVaaLWs 49 
                 ++  LNR LE++  + + F++V ++W 
  CCD26710.1 378 QVSSLNRYLENIWNLKENFDDVYNVWY 404
                 6789**********************5 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.61
   DASH_Dad1   4 rqRdrliqeIaesmee 19 
                 ++Rd l   I +++ +
  CCD26710.1 566 KERDVLYLKIIKKFAQ 581
                 79****9999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       696  (0.0388198); expected 358.6 (0.02)
Passed bias filter:                      405  (0.0225891); expected 358.6 (0.02)
Passed Vit filter:                        35  (0.00195214); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.25s 00:00:00.77 Elapsed: 00:00:00.38
# Mc/sec: 5128.35
//
Query:       CCD26711.1  [L=135]
Description: hypothetical protein NDAI_0I01420 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18   12.1   1.1       0.21   11.9   0.5    1.4  1  DUF778     Protein of unknown function (DUF778)
       0.42    8.5   9.2       0.42    8.5   9.2    1.1  1  Dicty_REP  Dictyostelium (Slime Mold) REP protein
        1.4    8.9  13.2        1.9    8.5  13.2    1.4  1  Mucin      Mucin-like glycoprotein


Domain annotation for each model (and alignments):
>> DUF778  Protein of unknown function (DUF778)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.5   3.6e-05      0.21      54     127 ..      41     120 ..      33     133 .. 0.70

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 3.6e-05
      DUF778  54 esrarrtrrePfklltqggkqailvlwerllallqPdevstcsaqtalsakaerekaes.stkrteevknsy.....dda 127
                   ++ r++++ +++ t g k  ++   + + ++l+P+e+ + +a+++ ++++e+e++ +  +k  +e  ++y     +da
  CCD26711.1  41 TTKGTRKKKTVAAVQTSGTKLGAATNDDDDGGKLSPKEAARLAAEKRFKEATEKETKGElGKKLASERAKTYkahvlEDA 120
                 46899**********************************88877776555555544433033333444445533333555 PP

>> Dicty_REP  Dictyostelium (Slime Mold) REP protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   9.2   7.1e-05      0.42     250     316 ..       6      71 ..       3     123 .. 0.69

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 7.1e-05
   Dicty_REP 250 skeknkttttttttttttsqartrkrkaidddklsenqakekkknskksdddpqsdfskkssrksgs 316
                 sk++++ttttt+tttt t+++++r r + + ++ +e+++ ++kk++  + + ++++    +++++++
  CCD26711.1   6 SKTDSPTTTTTATTTTNTNKPVQRIRPKHN-KNAEETTKGTRKKKTVAAVQTSGTKLGAATNDDDDG 71 
                 567778888888888888888877777555.555555555555555555555566666655555544 PP

>> Mucin  Mucin-like glycoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5  13.2   0.00032       1.9      43      84 ..       6      56 ..       2     102 .. 0.62

  Alignments for each domain:
  == domain 1  score: 8.5 bits;  conditional E-value: 0.00032
       Mucin 43 skltttttttkppttttttt...............tasttittkttkattttttttt 84
                sk++++tttt+++ttt t +               t      tk t+   t ++  t
  CCD26711.1  6 SKTDSPTTTTTATTTTNTNKpvqrirpkhnknaeeT------TKGTRKKKTVAAVQT 56
                677777777777777777777777777765432221......222222222222111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1419  (0.0791455); expected 358.6 (0.02)
Passed bias filter:                      382  (0.0213063); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 996.11
//
Query:       CCD26712.1  [L=677]
Description: hypothetical protein NDAI_0I01430 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     0.0025   17.5   0.1     0.0079   15.9   0.1    2.0  1  CUE       CUE domain
  ------ inclusion threshold ------
      0.035   14.5   1.0       0.64   10.4   0.0    2.5  2  DUF3280   Protein of unknown function (DUF2380)


Domain annotation for each model (and alignments):
>> CUE  CUE domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   8.9e-07    0.0079       2      41 ..     327     366 ..     326     367 .. 0.95

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 8.9e-07
                 HHHHHHHHHHSTTS-HHHHHHHHHHCTTTHHHHHHHHHHC CS
         CUE   2 eqmletLkemFPdldeevIravLrasngnvEatinaLLeg 41 
                 +++l+ L e+FP l+  + +  L++++ nvE+++n L+e+
  CCD26712.1 327 QEDLNALGELFPGLSNYQKTVLLQRYDSNVELVTNLLFED 366
                 78999*********************************96 PP

>> DUF3280  Protein of unknown function (DUF2380)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   7.2e-05      0.64      10      59 ..     144     193 ..     141     203 .. 0.85
   2 ?    1.9   0.2     0.031   2.8e+02      12      48 ..     480     514 ..     477     538 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.4 bits;  conditional E-value: 7.2e-05
     DUF3280  10 liDtsaepadq.taeearRlaavteqlreaLaesgryevvdlapaaaeiek 59 
                 liD+s +p+ + ++++ +R+ ++++ql++ + esg+++ vdl++ +a ++k
  CCD26712.1 144 LIDSSLKPKINtQKAQLNRIHQLQQQLKHII-ESGNFTRVDLKAFQALLSK 193
                 89*********99**************9876.5677******998887764 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.031
     DUF3280  12 DtsaepadqtaeearRlaavteqlreaLaesgryevv 48 
                 D  +e+++qt++ a+R +a++  l + L+e++   + 
  CCD26712.1 480 DVAEETSQQTKKTAARYDAIEGYLWQLLKEDK--SLF 514
                 556777878********************998..444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      2554  (0.142451); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                       100  (0.00557756); expected 17.9 (0.001)
Passed Fwd filter:                        18  (0.00100396); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.94u 0.30s 00:00:01.24 Elapsed: 00:00:00.47
# Mc/sec: 4362.45
//
Query:       CCD26713.1  [L=383]
Description: hypothetical protein NDAI_0I01440 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.5e-13   49.8   9.3    0.00019   22.1   0.7    6.3  6  WD40         WD domain, G-beta repeat
    1.1e-11   44.8   0.3      0.016   15.5   0.0    5.0  5  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
     0.0077   16.1   0.1       0.21   11.5   0.0    2.4  2  eIF2A        Eukaryotic translation initiation factor eIF2A


Domain annotation for each model (and alignments):
>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.057   3.4e+02      12      34 ..      20      43 ..      12      44 .. 0.80
   2 !   16.6   0.1   1.8e-06     0.011       2      37 ..      54      89 ..      53      90 .. 0.91
   3 ?    2.1   0.0      0.07   4.2e+02      14      29 ..     111     126 ..     103     131 .. 0.88
   4 !   22.1   0.7   3.2e-08   0.00019      12      37 ..     151     180 ..     142     181 .. 0.82
   5 ?    3.3   0.0     0.029   1.7e+02      10      38 .]     213     242 ..     206     242 .. 0.72
   6 ?    2.6   0.0     0.047   2.8e+02       9      37 ..     348     381 ..     342     382 .. 0.58

  Alignments for each domain:
  == domain 1  score: 2.4 bits;  conditional E-value: 0.057
                SEEEEEEETTSSEEE.EEETTSEE CS
        WD40 12 svtslafspdgawla.sGsdDgtv 34
                +++s +fs d ++la ++  D+ +
  CCD26713.1 20 PIYSHCFSNDRSLLAiTCETDCLI 43
                48999********98577447755 PP

  == domain 2  score: 16.6 bits;  conditional E-value: 1.8e-06
                EEEEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  2 qclrtltGH.ssvtslafspdgawlasGsdDgtvriW 37
                +++ tl+ H + +t+++ s +g+ + ++s D++ ++W
  CCD26713.1 54 KLVATLSNHdKTITAVDISIHGRIV-TCSQDRNAYVW 89
                57899****888************7.79********* PP

  == domain 3  score: 2.1 bits;  conditional E-value: 0.07
                 EEEEEETTSSEEEEEE CS
        WD40  14 tslafspdgawlasGs 29 
                 t++ + p+g  +a Gs
  CCD26713.1 111 TCVTWAPNGYKFAVGS 126
                 8********9999987 PP

  == domain 4  score: 22.1 bits;  conditional E-value: 3.2e-08
                 S....EEEEEEETTSSEEEEEETTSEEEEE CS
        WD40  12 s....vtslafspdgawlasGsdDgtvriW 37 
                 +    +++l+++ +g +lasG+ Dg vr++
  CCD26713.1 151 PikstINCLSWHANGVLLASGGTDGYVRVF 180
                 24446****************99*****97 PP

  == domain 5  score: 3.3 bits;  conditional E-value: 0.029
                 S.SSEEEEEEETTSSE......EE.EEETTSEEEEEE CS
        WD40  10 H.ssvtslafspdgaw......la.sGsdDgtvriWd 38 
                 H   v+++      +w      +a  ++ Dgt+ i+d
  CCD26713.1 213 HgAYVHDV------KWrsniekIAyVAH-DGTLNIFD 242
                 53348888......66666555544689.*****998 PP

  == domain 6  score: 2.6 bits;  conditional E-value: 0.047
                 SS.SSEEEEE....EETTSSE...EEEEETTSEEEEE CS
        WD40   9 GH.ssvtsla....fspdgaw...lasGsdDgtvriW 37 
                 +H + ++ la        +     ++s++ Dg++ i+
  CCD26713.1 348 AHeNAISELAsfaeS---SGQvtqVSSSGLDGKIVIY 381
                 565556666543221...222233666677****997 PP

>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0     0.002        12       2      58 ..      25      83 ..      24      98 .. 0.82
   2 !    4.6   0.0    0.0066        40      40      70 ..     109     139 ..     104     151 .. 0.84
   3 !   15.5   0.0   2.6e-06     0.016      38      66 ..     153     181 ..     140     185 .. 0.89
   4 !   11.0   0.0   6.8e-05       0.4      29      70 ..     197     246 ..     192     266 .. 0.83
   5 ?    0.7   0.0      0.11   6.5e+02      38      68 ..     255     285 ..     248     296 .. 0.80

  Alignments for each domain:
  == domain 1  score: 6.3 bits;  conditional E-value: 0.002
  ANAPC4_WD40  2 swcptmDLiAlatedgellvfRlng.....qrvwtleedkedsevrsLaWkpdgklLavays 58
                 ++++ + L+A+  e+ + l++R+ng     + v tl  +++d++++++  +  g++   + +
   CCD26713.1 25 CFSNDRSLLAITCET-DCLIYRMNGananpKLVATL--SNHDKTITAVDISIHGRIVTCSQD 83
                 588899999986665.6779*****88877777777..89*********9999999877655 PP

  == domain 2  score: 4.6 bits;  conditional E-value: 0.0066
  ANAPC4_WD40  40 evrsLaWkpdgklLavaysdgevrlldaesg 70 
                    +++ W p+g  +av+ s   + ++  e++
   CCD26713.1 109 AATCVTWAPNGYKFAVGSSARIIAVCYYEQE 139
                  67899*************9999988876654 PP

  == domain 3  score: 15.5 bits;  conditional E-value: 2.6e-06
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlld 66 
                  +s++++L+W+ +g lLa +  dg vr+++
   CCD26713.1 153 KSTINCLSWHANGVLLASGGTDGYVRVFS 181
                  789***********************986 PP

  == domain 4  score: 11.0 bits;  conditional E-value: 6.8e-05
  ANAPC4_WD40  29 vwtl........eedkedsevrsLaWkpdgklLavaysdgevrlldaesg 70 
                  vw++        +e  ++  v++++W+ + + +a + +dg+++++d+++ 
   CCD26713.1 197 VWGTkfpfgslvNERYHGAYVHDVKWRSNIEKIAYVAHDGTLNIFDSQND 246
                  55555566666677889999**************************9985 PP

  == domain 5  score: 0.7 bits;  conditional E-value: 0.11
  ANAPC4_WD40  38 dsevrsLaWkpdgklLavaysdgevrlldae 68 
                  +   ++L W +d ++++ +ys   v + +a 
   CCD26713.1 255 GLPFKALVWINDHEIICAGYSCHPVLFAEAA 285
                  5567899************997777666665 PP

>> eIF2A  Eukaryotic translation initiation factor eIF2A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   3.4e-05      0.21      58     120 ..     106     173 ..      92     192 .. 0.81
   2 ?    2.1   0.0     0.026   1.6e+02      61     108 ..     216     263 ..     205     275 .. 0.65

  Alignments for each domain:
  == domain 1  score: 11.5 bits;  conditional E-value: 3.4e-05
                 SSS.EEEEEE-TTSS-EEEEESSSSCEEEEEECS.....CEEEEEEEEES--EEEE-TTSSEEEEE-T CS
       eIF2A  58 kegpihdvaWspkskefaviyGkmpakvslfdlk.....vkviskleeqkrNtiffspkgklvllaGf 120
                  +  + +v+W p++ +fav        v  ++++      k i+k  ++  N++ ++++g l++ +G 
  CCD26713.1 106 INRAATCVTWAPNGYKFAVGSSARIIAVCYYEQEnnwwvSKHIKKPIKSTINCLSWHANGVLLASGGT 173
                 3445799************666666688889986678878889999999************9999984 PP

  == domain 2  score: 2.1 bits;  conditional E-value: 0.026
                 .EEEEEE-TTSS-EEEEESSSSCEEEEEECS..CEEEEEEEEES--EEEE CS
       eIF2A  61 pihdvaWspkskefaviyGkmpakvslfdlk..vkviskleeqkrNtiff 108
                  +hdv+W ++ +++a +    + + ++fd++  ++ +   +  +  ++++
  CCD26713.1 216 YVHDVKWRSNIEKIAYVA--HDGTLNIFDSQndLQSVNAPDGLPFKALVW 263
                 49*******999998774..566777777753455555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       498  (0.0277762); expected 358.6 (0.02)
Passed bias filter:                      385  (0.0214736); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.24s 00:00:00.72 Elapsed: 00:00:00.40
# Mc/sec: 2879.99
//
Query:       CCD26714.1  [L=85]
Description: hypothetical protein NDAI_0I01450 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-26   91.2   0.8      4e-26   90.9   0.8    1.0  1  DASH_Dad3  DASH complex subunit Dad3


Domain annotation for each model (and alignments):
>> DASH_Dad3  DASH complex subunit Dad3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.8   2.2e-30     4e-26       2      70 ..       6      81 ..       5      83 .. 0.96

  Alignments for each domain:
  == domain 1  score: 90.9 bits;  conditional E-value: 2.2e-30
   DASH_Dad3  2 spleqevLdeYerLaenlktLaselkeLasn.......steeildgLReLErkiglvyTLlKaSVYsivlqqeede 70
                +pl+q+vL++Y++La++l++L++++k+L+++       s+e+ l+++Re+E+k+glv+TLlK+SVYs++lq++++ 
  CCD26714.1  6 TPLQQNVLEKYRHLARSLQSLDNTIKDLNTTkrdsgniSPEQALEQMREIEVKLGLVGTLLKGSVYSLILQKKNEF 81
                89************************************9*********************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       822  (0.0458475); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        52  (0.00290033); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.27s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 629.44
//
Query:       CCD26715.1  [L=517]
Description: hypothetical protein NDAI_0I01460 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.3e-30  103.9   0.0    9.3e-30  102.8   0.0    1.6  1  TAF6_C       TAF6 C-terminal HEAT repeat domain
    1.3e-27   95.7   0.3    2.7e-27   94.7   0.3    1.6  1  TAF          TATA box binding protein associated factor (TAF)
     0.0027   18.1   0.8     0.0061   16.9   0.3    1.8  2  Histone      Core histone H2A/H2B/H3/H4
     0.0028   17.4   0.1     0.0047   16.7   0.1    1.3  1  TAF4         Transcription initiation factor TFIID component 
  ------ inclusion threshold ------
      0.024   15.0   1.0          1    9.8   0.1    3.2  3  CENP-S       CENP-S protein
      0.027   14.2   0.0       0.27   11.0   0.0    2.5  2  DUF348       G5-linked-Ubiquitin-like domain
      0.028   14.5   0.2      0.064   13.3   0.2    1.5  1  TFIID-31kDa  Transcription initiation factor IID, 31kD subuni
       0.65    9.9   5.7         30    4.5   2.7    3.3  3  Sec7_N       Guanine nucleotide exchange factor in Golgi tran


Domain annotation for each model (and alignments):
>> TAF6_C  TAF6 C-terminal HEAT repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.8   0.0   4.1e-33   9.3e-30       1      89 [.     314     411 ..     314     412 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.8 bits;  conditional E-value: 4.1e-33
      TAF6_C   1 vltcllakklgak..........seledhwaLRdfAAslLakilkkysssyktLkprvtrtllkvlldpkkslgtlyGallglaalGeeavrklvlpnl 89 
                 +lt+llakklg +          ++le ++aLRdfAAslL+++lkk++++yk+Lkpr+trtllk++ld+++++gt+yG+l+g+++l++e++r+++ +nl
  CCD26715.1 314 ILTLLLAKKLGGTlthdtpeelhESLERTNALRDFAASLLDYVLKKFPQIYKSLKPRITRTLLKTFLDTNRVFGTYYGCLRGISVLESESIRFFL-GNL 411
                 79********998999***9999999999*****************************************************************9.776 PP

>> TAF  TATA box binding protein associated factor (TAF)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.7   0.3   1.2e-30   2.7e-27       2      66 .]      10      74 ..       9      74 .. 0.98

  Alignments for each domain:
  == domain 1  score: 94.7 bits;  conditional E-value: 1.2e-30
                ----HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH- CS
         TAF  2 silpkesvkviAeslGitnLsdeaaalLaedveyrlkeivqeaakfmrhskRqkLtvaDvdsALr 66
                +++p+++vk++A+slG++n++++++++La+dveyr+ ei+++a+kf+rhskR+ Lt++Dv +ALr
  CCD26715.1 10 IWSPQDTVKDVADSLGLENINADVLKALAMDVEYRILEIIEQAVKFKRHSKRDMLTTDDVAKALR 74
                799*************************************************************9 PP

>> Histone  Core histone H2A/H2B/H3/H4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   2.7e-06    0.0061      83     130 ..      28      75 ..      17      76 .. 0.93
   2 ?   -2.1   0.0       2.1   4.8e+03      52      72 ..     211     231 ..     173     250 .. 0.60

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 2.7e-06
                 EEXHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTXSEEXHHHHHHHHHH CS
     Histone  83 risaeavlalqealEallvelfeeAnllakhaKRvTitpkDiqlArrl 130
                  i a+ + al++ +E+ + e+ e+A +  +h+KR  +t  D+  A+r 
  CCD26715.1  28 NINADVLKALAMDVEYRILEIIEQAVKFKRHSKRDMLTTDDVAKALRA 75 
                 58899****************************************996 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 2.1
                 HHHHHXXSXXSXHHHHHHHHH CS
     Histone  52 rkyqkstdlliqklpfaRvvr 72 
                 +   k+   +  +++f++v+ 
  CCD26715.1 211 KPLVKHVLSKELQIYFNKVIA 231
                 444555556667777887765 PP

>> TAF4  Transcription initiation factor TFIID component TAF4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.1e-06    0.0047      53     123 ..      14      77 ..      13      80 .. 0.90

  Alignments for each domain:
  == domain 1  score: 16.7 bits;  conditional E-value: 2.1e-06
        TAF4  53 qkklaeiakkeglksidpDvlellSlAveerLrgLltklivlskhRrrgekskkrtesltsdvrkqLrela 123
                 q++++++a + gl++i++Dvl+ l++ ve r+ +++++++   +h  r     ++   +t+dv+k+Lr l+
  CCD26715.1  14 QDTVKDVADSLGLENINADVLKALAMDVEYRILEIIEQAVKFKRHSKR-----DM-L-TTDDVAKALRALN 77 
                 5678999999******************************99999888.....34.3.59********998 PP

>> CENP-S  CENP-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00045         1      28      70 ..      31      73 ..      13      77 .. 0.70
   2 ?   -0.1   0.0      0.57   1.3e+03      27      46 ..     281     300 ..     258     306 .. 0.68
   3 ?    1.0   0.0      0.25   5.5e+02      19      49 ..     436     466 ..     424     471 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.00045
      CENP-S 28 kqfiaal.telvykqlenlakDLeaFakHAkRstittdDvlLla 70
                 ++++al +++ y+ le + +    F +H kR++ ttdDv   +
  CCD26715.1 31 ADVLKALaMDVEYRILEIIEQ-AVKFKRHSKRDMLTTDDVAKAL 73
                555555523555555555544.457***************7655 PP

  == domain 2  score: -0.1 bits;  conditional E-value: 0.57
      CENP-S  27 tkqfiaaltelvykqlenla 46 
                 + + + ++ e++y  l+n++
  CCD26715.1 281 NLELLTTILEMIYSLLSNTS 300
                 44677899999999999887 PP

  == domain 3  score: 1.0 bits;  conditional E-value: 0.25
      CENP-S  19 aaekeveatkqfiaaltelvykqlenlakDL 49 
                 +++++ +++k+ i+ l++ v + +  l +DL
  CCD26715.1 436 ENNSNKKFSKEEIEYLVNTVINAICVLKNDL 466
                 4567788***************999999998 PP

>> DUF348  G5-linked-Ubiquitin-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.27       9      29 ..       7      27 ..       6      41 .. 0.89
   2 ?   -0.5   0.0      0.47   1.1e+03      16      29 ..      66      79 ..      64      86 .. 0.87

  Alignments for each domain:
  == domain 1  score: 11.0 bits;  conditional E-value: 0.00012
                EEEE----SSHHHHHHHTT-- CS
      DUF348  9 tvtvrTaadTVgdlLeeagit 29
                 +t++++ dTV+d+ +++g++
  CCD26715.1  7 SYTIWSPQDTVKDVADSLGLE 27
                68**************99986 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.47
                -SSHHHHHHHTT-- CS
      DUF348 16 adTVgdlLeeagit 29
                 d+V+ +L++++++
  CCD26715.1 66 TDDVAKALRALNVE 79
                589*******9996 PP

>> TFIID-31kDa  Transcription initiation factor IID, 31kD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.2   2.9e-05     0.064      10      68 ..      16      74 ..      12      80 .. 0.90

  Alignments for each domain:
  == domain 1  score: 13.3 bits;  conditional E-value: 2.9e-05
  TFIID-31kDa 10 lihliLaslgvteyeerVvlqL.ldfayrytssvLedAkvlaehakkkevslddvrlAiq 68
                 +++ +  slg+++++ +V++ L +d+ yr + +++e+A  +++h+k++ +++ddv  A+ 
   CCD26715.1 16 TVKDVADSLGLENINADVLKALaMDVEYR-ILEIIEQAVKFKRHSKRDMLTTDDVAKALR 74
                 567777899***********9989*****.789**********************98875 PP

>> Sec7_N  Guanine nucleotide exchange factor in Golgi transport N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.02        46      97     142 ..     215     264 ..     212     270 .. 0.78
   2 ?    4.5   2.7     0.014        30      29      74 ..     274     319 ..     268     405 .. 0.81
   3 ?   -3.5   0.0       3.8   8.6e+03     101     115 ..     445     459 ..     438     479 .. 0.66

  Alignments for each domain:
  == domain 1  score: 3.9 bits;  conditional E-value: 0.02
      Sec7_N  97 rseLktEievflsllilillesdssl....wqrvlaLeilrrlcsdpqll 142
                 ++ L +E++++++ +i  l++ d++      ++  aL +lr  ++  ql+
  CCD26715.1 215 KHVLSKELQIYFNKVIAALITTDTENpdaqYMKTAALTSLRTDSGLHQLV 264
                 67899**************9886664455689999999988766666655 PP

  == domain 2  score: 4.5 bits;  conditional E-value: 0.014
      Sec7_N  29 aersktfsLeLlesvlsnhgdvfrkhpellqllkqklcplLlknls 74 
                 +  + +  LeLl ++l+  ++++++ + +l+   + l+p++l++l 
  CCD26715.1 274 QITHNLSNLELLTTILEMIYSLLSNTSIFLDPYIHSLMPSILTLLL 319
                 5567778899999999999999999999999999999999999985 PP

  == domain 3  score: -3.5 bits;  conditional E-value: 3.8
      Sec7_N 101 ktEievflsllilil 115
                 k+Eie +++ +i  +
  CCD26715.1 445 KEEIEYLVNTVINAI 459
                 566666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       990  (0.0552178); expected 358.6 (0.02)
Passed bias filter:                      675  (0.0376485); expected 358.6 (0.02)
Passed Vit filter:                        53  (0.0029561); expected 17.9 (0.001)
Passed Fwd filter:                         8  (0.000446204); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.59u 0.30s 00:00:00.88 Elapsed: 00:00:00.45
# Mc/sec: 3441.37
//
Query:       CCD26716.1  [L=686]
Description: hypothetical protein NDAI_0I01470 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-43  148.5  27.0    4.7e-30  104.9  20.0    2.1  2  SLD3      DNA replication regulator SLD3
    8.8e-27   93.5   0.2    2.4e-26   92.1   0.2    1.8  1  Sld3_N    Sld3 N-terminal domain


Domain annotation for each model (and alignments):
>> SLD3  DNA replication regulator SLD3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   1.6   1.2e-16   1.1e-12       1      79 [.     150     227 ..     150     258 .. 0.83
   2 !  104.9  20.0   5.3e-34   4.7e-30     131     537 ..     250     675 ..     227     680 .. 0.56

  Alignments for each domain:
  == domain 1  score: 47.5 bits;  conditional E-value: 1.2e-16
                 SHHHHHHHHHHHHHHSTTS-HHHHHHTHHHHHHHHHHHHHHTTTHHHHHHHHHHTT---HHHHHHHHTGGGS--SSHH. CS
        SLD3   1 dilenlrtqYleaLYssktsLaYFaKgpLsRaRaafqldlesnlemsdliefLrsliLstkeiDkKYretlpeviselk 79 
                 d+ ++l+++Y+e L++++ +LaYF+K++L+R++++++   + + +++++ ++L+ + L ++++Dk +  t   + ++++
  CCD26716.1 150 DPRSYLENKYYEGLFLIHIPLAYFVKSNLVRFKNMCKAAFKDD-YQKEYRKILSDMTLEVTNFDKHHDGTTFLINDNIS 227
                 56789********************************777776.5667*****************99766555554444 PP

  == domain 2  score: 104.9 bits;  conditional E-value: 5.3e-34
                 ....HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT.........T-GGGGS---------------------..-------............HHHHHHH CS
        SLD3 131 eesreeeikkhisdLrvREtqLQiiliLEilaLeekssekqlpglekkkkakekkkeekekkqktkqkkkk..kkkkkqn............lpvlLdv 215
                  e ++e + + +  L++RE++LQii +LE++ L+         +l+++ k+ ekk+++k kk++ + ++k+  ++k+++n            + + Ld+
  CCD26716.1 250 IEAQKEFLTDLAFILKLREIKLQIIFLLELIYLN---------KLDNNFKNFEKKYKAKLKKRSLNIARKSiiRSKRQENkkiqhtkpnsfnYLECLDL 339
                 45566677777889********************.........3444444444444444444444444444444444444444445555555******* PP

                 HHHHHHHHHHHHHT-...-----------SH..HTT-TTSTTSHHHHHHHTHHHHHSSSSHHHHHHHHHHHCXX.................XXXXXXXX CS
        SLD3 216 llDRLcIWqsvlsdevkalaesqkleeeeea..esakkaesdslrdFcvdViiPFfsaRLPelcksinrKlggpvakspkkkkkskekskskakpgaaa 312
                 +lD+L+I++++l  e +   es++l   +e+  +  +k+++ s  +F ++V+iP+fs++ P+++++i  Kl gp+  s kk++ +k+ ++    p    
  CCD26716.1 340 YLDKLNILEVILETE-ASEPESDELPPIKEQkkSILDKNKESSSIGFTNYVLIPYFSKKAPNAVEFIASKLRGPSLRS-KKPTFTKAVKDYIVDPYDIP 436
                 ***********9999.55555555444333334899999***********************************8876.88877777444444444332 PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXX.XXXXXXXXX....XXXXXXXXX.XXXXXXXXXX...............XXXXXX CS
        SLD3 313 krsasqkekrrtlervltdekrsrrsvsrg...........pssaialsrsatatsipglkRessep.pllslisksesgllkskslkerevdlsasas 399
                 + s++q  +rr+    + d++   + + r             s+ + l+ s t+++++++  + s + + +sl+s+++s +l  ++l++r+ + +    
  CCD26716.1 437 TGSQTQVASRRSSLTSSIDNSVPSSPQMRIprpafvrqstlGSHLPDLLNSRTDSNLSEFLASDSQTiRKPSLLSRTKSDIL-MNNLQKRQLSVK---- 530
                 2222333333333333333321222122221112221111123335555555555555444433332133444444443333.556666666544.... PP

                 .XXXXXXXXXXXXXXXXXXX..XXXXXXXXXXX....XXXXXXXXXXXXX........XXXXXXXXXXXX...XXX.XXXXXXXXXXX........... CS
        SLD3 400 aeeakakkkaqveaeLkeaI..salrkPNRelv....akeiveaaekrlsklqas...srkskkpvrkpl...aqt.vqVkATPkknrkkDvlakaeee 485
                 + e++a++k +v+++L   I  ++l+     ++     ++ ++   +r+++++ s     ++++p+++++   + + +qV+ATPk +r      ++++ 
  CCD26716.1 531 ELESSASRKISVNRKLATGIdvKSLSVMAGGNIsspqNQQSFKRVGRRKAIKTFSaieHLQQNRPQKEEQtdlDPFeIQVMATPKVKR------DEKRP 623
                 44457778888888887544113444444444444444444555555555444433212223333333333333337*******9999......34444 PP

                 .........XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XXXXXXX CS
        SLD3 486 setaasaseetepaksssaqvvPsstlrksskekrknstssraeqsavqeTP 537
                 +++aa ++   +p ++s     P+ + + s  + + + + ++ + s+v++ P
  CCD26716.1 624 NKRAALHRIVESPINNSMLIKTPADKPKLSPLNTNLSMQAPQIQGSTVESPP 675
                 4455555555555444444444666666555555555555555555665555 PP

>> Sld3_N  Sld3 N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.2   2.7e-30   2.4e-26       1     116 []       5     116 ..       5     116 .. 0.98

  Alignments for each domain:
  == domain 1  score: 92.1 bits;  conditional E-value: 2.7e-30
                 EEEEEESS--TT--B-STT-EEEEGGGSTTTTS-STTTS-TT-EEEEE.-SS-EEEEEE-STTEEEEEEBSS--TTT------S-S----GGGS--... CS
      Sld3_N   1 slvgsvkelpkslilsldspklleseelpkevlselenspislKHllkdaddkyflLErYgkeywvlWevvsvdvteleeeqtelekskkeenpkeetk 99 
                 sl g+++++pk+l+l+++++kll+ ++++k vl++++n p+++K+l+kd++ +y+lLE+++k+y+v+W+v+++d+++l++ qt+l++ ++e+n+ke t 
  CCD26716.1   5 SLAGFITTIPKGLLLKSETTKLLKINDITKPVLDAIQNGPFWAKYLFKDEELSYYLLEHFNKNYYVQWDVNIEDIKVLDNIQTSLPVGSREDNEKELT- 102
                 57899*******************************************************************************************98. PP

                 ..GGGS-HHHHGGGG-- CS
      Sld3_N 100 aewdeikikellelwkE 116
                    d i++k l+ ++kE
  CCD26716.1 103 ---DIIDVKALFASCKE 116
                 ...9***********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       815  (0.0454571); expected 358.6 (0.02)
Passed bias filter:                      283  (0.0157845); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.59u 0.26s 00:00:00.85 Elapsed: 00:00:00.42
# Mc/sec: 4896.41
//
Query:       CCD26717.1  [L=459]
Description: hypothetical protein NDAI_0I01480 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.5e-36  122.0   8.4    4.1e-13   49.0   2.7    3.5  3  KH_1      KH domain
    5.2e-08   32.7   0.1      0.024   14.5   0.0    3.6  3  KH_4      KH domain
    2.8e-07   30.3   6.5      0.051   13.4   0.5    3.8  4  KH_2      KH domain
     0.0086   16.1   1.7        6.4    6.9   0.1    3.5  3  KH_5      NusA-like KH domain
  ------ inclusion threshold ------
        0.2   11.5   2.0       0.34   10.8   2.0    1.4  1  CSRNP_N   Cysteine/serine-rich nuclear protein N-terminus


Domain annotation for each model (and alignments):
>> KH_1  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.8   7.5e-13   2.7e-09       3      64 ..      85     145 ..      84     147 .. 0.89
   2 !   37.2   0.0   5.4e-13   1.9e-09       2      61 ..     186     245 ..     185     249 .. 0.87
   3 !   49.0   2.7   1.1e-16   4.1e-13       2      65 ..     377     439 ..     376     440 .. 0.89

  Alignments for each domain:
  == domain 1  score: 36.7 bits;  conditional E-value: 7.5e-13
                 EEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT...T.-EEEEEESHHHHHHHHHHH CS
        KH_1   3 rilvPsslvgriIGkgGsnIkeIreetgakIkvpk.sedegsderevtisGspeavekAkeli 64 
                 r+l+  +++++i+G +G++I +I++et ++I+v + ++    +er++ i+Gs e+ +kA+ +i
  CCD26717.1  85 RLLCTVKQASLIVGHRGETISRIKNETSTRINVSEnIRG--VPERVIYIKGSCENAAKACGQI 145
                 7889999*************************9854444..6*****************9888 PP

  == domain 2  score: 37.2 bits;  conditional E-value: 5.4e-13
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEESSTT.....T.-EEEEEESHHHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpksedeg..sderevtisGspeavekAk 61 
                 + +l+ ++l+g+iIGk G ++keI++ + ak     s+d+   s++r++t++G p+a++ A 
  CCD26717.1 186 INLLLSHHLIGYIIGKHGLRLKEIEDLSAAKLSA--SRDQLvpSNDRILTVTGVPDAIHIAT 245
                 5678899*******************99***994..4444468**********9999**996 PP

  == domain 3  score: 49.0 bits;  conditional E-value: 1.1e-16
                 EEEEEGGGHHHHHHTGGGHHHHHHHHHHT-EEEEES.STT...T.-EEEEEESHHHHHHHHHHHH CS
        KH_1   2 lrilvPsslvgriIGkgGsnIkeIreetgakIkvpk.sedegsderevtisGspeavekAkelie 65 
                 ++i ++ ++vg iIGk G++I++I+e tg++I +++  e    +er +ti+G+  + ++A+ li+
  CCD26717.1 377 REIYIDENYVGNIIGKEGKHINSIKETTGCSIIIDDsVEG--ATERKLTIRGTGMGSQAAIMLIS 439
                 5899**********************88*****9854444..7*********99989***99996 PP

>> KH_4  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.025        89      29      53 ..      82     106 ..      52     120 .. 0.83
   2 !   10.6   0.0   0.00011      0.39      15      52 ..     169     207 ..     166     223 .. 0.82
   3 !   14.5   0.0   6.7e-06     0.024      32      55 ..     378     401 ..     372     405 .. 0.91

  Alignments for each domain:
  == domain 1  score: 3.1 bits;  conditional E-value: 0.025
        KH_4  29 veielnvegedlGrvIGkrGrtldA 53 
                 v ++l +  ++  +++G rG+t++ 
  CCD26717.1  82 VFLRLLCTVKQASLIVGHRGETISR 106
                 55677778888999********985 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00011
        KH_4  15 peevevtee.eeeeeveielnvegedlGrvIGkrGrtld 52 
                 p +v v+ +  ++  ++i+l ++ + +G +IGk+G  l+
  CCD26717.1 169 PSSVVVDDDkPSKVLTTINLLLSHHLIGYIIGKHGLRLK 207
                 67788888877778899******************8776 PP

  == domain 3  score: 14.5 bits;  conditional E-value: 6.7e-06
        KH_4  32 elnvegedlGrvIGkrGrtldAlq 55 
                 e++++++ +G +IGk+G+ +++++
  CCD26717.1 378 EIYIDENYVGNIIGKEGKHINSIK 401
                 7999******************97 PP

>> KH_2  KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.3       2.6   9.2e+03      64      77 ..      33      47 ..      16      48 .. 0.58
   2 !    9.5   0.0   0.00023      0.84      33      62 ..      90     119 ..      79     132 .. 0.85
   3 !    8.6   0.0   0.00044       1.6      36      59 ..     195     218 ..     165     234 .. 0.83
   4 !   13.4   0.5   1.4e-05     0.051      29      58 ..     379     408 ..     374     425 .. 0.87

  Alignments for each domain:
  == domain 1  score: -3.4 bits;  conditional E-value: 2.6
                TCEEEEEE.EETTTG CS
        KH_2 64 kkVklniv.kVkkpe 77
                k+V l+ + +++k+e
  CCD26717.1 33 KRVALDDIaEIQKKE 47
                447777676777765 PP

  == domain 2  score: 9.5 bits;  conditional E-value: 0.00023
                 ESCHHHHHTGGGHHHHHHHHHHHHHHHHHH CS
        KH_2  33 esqpgivIGkgGsnikkigkelrkdiekle 62 
                 + q  +++G++G++i +i+ e   +i + e
  CCD26717.1  90 VKQASLIVGHRGETISRIKNETSTRINVSE 119
                 678899*****************9997655 PP

  == domain 3  score: 8.6 bits;  conditional E-value: 0.00044
                 HHHHHTGGGHHHHHHHHHHHHHHH CS
        KH_2  36 pgivIGkgGsnikkigkelrkdie 59 
                  g +IGk G ++k+i+     ++ 
  CCD26717.1 195 IGYIIGKHGLRLKEIEDLSAAKLS 218
                 699*************98887775 PP

  == domain 4  score: 13.4 bits;  conditional E-value: 1.4e-05
                 EEEEESCHHHHHTGGGHHHHHHHHHHHHHH CS
        KH_2  29 iviresqpgivIGkgGsnikkigkelrkdi 58 
                 i i e+  g +IGk+G+ i++i+++ +  i
  CCD26717.1 379 IYIDENYVGNIIGKEGKHINSIKETTGCSI 408
                 77889999***************9987666 PP

>> KH_5  NusA-like KH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.2     0.021        74      20      44 ..      94     117 ..      88     128 .. 0.80
   2 ?    2.5   0.0     0.044   1.6e+02      19      35 ..     195     211 ..     188     240 .. 0.89
   3 !    6.9   0.1    0.0018       6.4      18      35 ..     385     402 ..     376     408 .. 0.87

  Alignments for each domain:
  == domain 1  score: 3.5 bits;  conditional E-value: 0.021
        KH_5  20 GaivgkkGsrikavsseLkgekidv 44 
                   ivg +G+ i+ +++e   ++i v
  CCD26717.1  94 SLIVGHRGETISRIKNET-STRINV 117
                 569*************98.666665 PP

  == domain 2  score: 2.5 bits;  conditional E-value: 0.044
        KH_5  19 vGaivgkkGsrikavss 35 
                 +G i+gk G r k++++
  CCD26717.1 195 IGYIIGKHGLRLKEIED 211
                 9************9975 PP

  == domain 3  score: 6.9 bits;  conditional E-value: 0.0018
        KH_5  18 pvGaivgkkGsrikavss 35 
                  vG i+gk+G+ i+++++
  CCD26717.1 385 YVGNIIGKEGKHINSIKE 402
                 59*************986 PP

>> CSRNP_N  Cysteine/serine-rich nuclear protein N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   2.0   9.4e-05      0.34      66     148 ..      41     118 ..       6     170 .. 0.60

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 9.4e-05
     CSRNP_N  66 lkeeklealklklsssdlleeeeeealevddisdedldseaelddylflqplstkkrralLraaGvkkidseekkelraiRks 148
                 ++ +k+   +l+ s+++++e++++e+ ev + + +d + +++ dd +fl+ l t k+  l+     + i +   ++  +i  s
  CCD26717.1  41 AEIQKK---ELSVSHDEVSETTDQEEEEVTNYE-DDSN-KTDDDDLVFLRLLCTVKQASLIVGHRGETISRIKNETSTRINVS 118
                 222222...222334444444444444443333.3333.6899*******998766666554333344555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1024  (0.0571142); expected 358.6 (0.02)
Passed bias filter:                      511  (0.0285013); expected 358.6 (0.02)
Passed Vit filter:                        42  (0.00234257); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.24s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 3554.02
//
Query:       CCD26718.1  [L=739]
Description: hypothetical protein NDAI_0I01490 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.9e-158  527.9  19.9   4.4e-158  527.7  19.9    1.0  1  OPT        OPT oligopeptide transporter protein
  ------ inclusion threshold ------
        1.8    8.3  13.3      0.034   13.9   0.7    3.5  3  Claudin_2  PMP-22/EMP/MP20/Claudin tight junction
         10    6.3  15.3        1.3    9.2   8.3    3.1  3  DUF4229    Protein of unknown function (DUF4229)


Domain annotation for each model (and alignments):
>> OPT  OPT oligopeptide transporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  527.7  19.9  7.4e-162  4.4e-158       1     615 [.      38     731 ..      38     732 .. 0.92

  Alignments for each domain:
  == domain 1  score: 527.7 bits;  conditional E-value: 7.4e-162
         OPT   1 elTlRavvlGillgvlgsavnmyfglrtglvsissipaallafplgk.alarilpklslnpgpftikEnvliqtmasaaatlalatglivvipalel.. 96 
                 ++TlRa+++G+++g+l+ ++n++fgl+tg+vs++s+p+alla++++k ++    p+++ln+ p t  E+v++q+ma+a++t++la g+++vipa+e+  
  CCD26718.1  38 QITLRATFIGLIIGTLVLISNFQFGLQTGWVSMMSLPSALLACAFFKqVW----PRIFLNDSPITDVETVYVQSMAVAVGTGPLAYGFVGVIPAMEKfm 132
                 69*********************************************777....88889*************************************9*9 PP

         OPT  97 ..........ygqsagfgylillslsvqllGvgfagplRkflvypeklifPsglataellkalhkpegee............................. 156
                            g++++f +l+++s++++++G++fa+plRk+++++ekl+fPsg+ata l+ +l++++  +                             
  CCD26718.1 133 tfkesgntreQGTPFTFNQLFIWSMALAFFGIFFAIPLRKQVIIKEKLPFPSGTATAILIAVLNGSQVLQevskaelmeirnrrlnqcpevlrpdedep 231
                 9999877776677777***************************************************66667777788888888888999999999999 PP

         OPT 157 .............................ksrlkfflivflgsfv.wglfplylfpalssfswltwiapknvvlanlfglgllp.ltfdwnviaayiGs 224
                                              +s++k  + ++l +f+ +      ++++ls+f  + +++p       +fg  l + +++++++++ayiG+
  CCD26718.1 232 vethelltqstlaegydstvndsdandeeESSYKQNIAILLKTFFpS-----AIYTILSYFIPILHAIP-------IFGNYLSKaYLWNFQPSPAYIGQ 318
                 99999999999999999**********99999999999888888744.....47999****99*9****.......699999999************** PP

         OPT 225 glivplwvavnmliGavlswgiliPllyysngwypaylpydvteild.edgvldyekyigyglmllaalvallylvqfaait.llivhtilkhgkdika 321
                 g+i++l+++++m++G++l+w il+P+ + + gw p++++     + d  +gv++++++ ++++m+++++v +l+++ +++i+ ll  ++ ++ +k   +
  CCD26718.1 319 GIIMGLPTVSYMMFGCILGWAILAPI-ARHAGWVPPDAD-----VQDwDNGVQGWIVWCSLSVMVADSVVGFLVITIKSTIKfLLRDDKTIFLNKVWDD 411
                 **************************.8***********.....6666**********************************88888999********* PP

         OPT 322 alksa.........rsprteeddrhrrlmrkykd.................vpmwwylallvlslvigiivvealf..tqlpvwglllalllafllaiv 392
                 ++ s+         +         h++l r+++                  v ++++++++++s++++++++++lf    +pv++++ al+++++l+i 
  CCD26718.1 412 SFESMlleeesaikN--------CHSALCRREDLirlasseddnevdskflVKYTTVVSGIIVSSIMCLVFLIYLFgiDIIPVYAMVSALVISVFLSIL 502
                 *****7555433330........3444443333344444456677778888************************************************ PP

         OPT 393 saiiaGltglnpvsgigkltqlifgallpg....rpvanlvfgavvyaaaaqagdfmqDLKtGhllkasPraqfvaqliGtlvgavvniavlkllvkay 487
                 +++++G+t+lnpvsgigkl+qlif++++p+    ++++nlv+g+v++a+ +qagd+mqDLKtGhll+asPraqfvaqliG+ ++++++++++++++k y
  CCD26718.1 503 AVRALGETDLNPVSGIGKLSQLIFALIIPRdhlgSVLINLVAGGVAEAGSQQAGDLMQDLKTGHLLGASPRAQFVAQLIGASWSVILSSFMYICYNKIY 601
                 ******************************99988**************************************************************** PP

         OPT 488 gdictadasnaftaPqakvfaavavllvggkkglpwafl...lgavapfilllllkk.fpkkstarkl....plplafavgfylppslsialligglia 578
                 + +     ++++++P+a+v++++a+ lv+g+ glp   +   l+++ +f++l+llk+ ++++ +a+k+    p+++a++vg+y+ ps++ia+++gg+i+
  CCD26718.1 602 DLP-----NEQIRIPTAVVWIDCAR-LVTGH-GLPTRSMecaLLLGSIFAVLSLLKNcYRDNEIAAKWliwvPSGVAVGVGIYNAPSFTIARFLGGTIS 693
                 *87.....99***************.*****.88887766669999***************************************************** PP

         OPT 579 nlwlk.rrdaewakkynyvlaaGLiaGealmgviiafl 615
                 ++wl  ++  ++ak++++v+++GL++Ge++++++++++
  CCD26718.1 694 HIWLGrHKGEMNAKTKMIVFSSGLVLGEGVCSIFNMIF 731
                 ****83666889***********************998 PP

>> Claudin_2  PMP-22/EMP/MP20/Claudin tight junction
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   0.7   5.7e-06     0.034     110     184 ..      76     167 ..      13     169 .. 0.76
   2 ?    1.9   0.1     0.027   1.6e+02      69     177 ..     255     378 ..     229     393 .. 0.68
   3 ?   -2.6   2.2      0.66   3.9e+03      78      78 ..     477     477 ..     419     507 .. 0.58

  Alignments for each domain:
  == domain 1  score: 13.9 bits;  conditional E-value: 5.7e-06
   Claudin_2 110 gllallkqsv................lllkaagilfllag..vlgllavvvfiesvkkvfeesfqqwmqelqnnvrisfgWSfalAvagvvls 184
                 +lla+ ++++                ++++    + + +g  + g+++v+  +e+    f+es ++++q   +++++ f WS+alA +g+++ 
  CCD26718.1  76 ALLACAFFKQvwpriflndspitdveTVYVQSMAVAVGTGplAYGFVGVIPAMEKF-MTFKESGNTREQGTPFTFNQLFIWSMALAFFGIFFA 167
                 33333333334455555557777777777776667777773345778888777777.67999*9***************************96 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.027
   Claudin_2  69 pfekkeeeivsisatsllalarfvqvlliLslvlivlavvlgllallkqsv...............lllkaagilfl...lagvlgllavvvfiesvkk 149
                   +++ee ++  ++ +ll+++   ++ +iLs ++ +l ++ ++   l++++               ++ + +  +++   + g  +l++++ ++ +v  
  CCD26718.1 255 DANDEEESSYKQNIAILLKTFFPSAIYTILSYFIPILHAIPIFGNYLSKAYlwnfqpspayigqgiIMGLPTVSYMMfgcILGWAILAPIARHAGWVP- 352
                 45566777777777777777777788999998888999999888888888878888888777777633333333333233345556777778888885. PP

   Claudin_2 150 vfeesfqqwmqelqnnvrisfgWSfalA 177
                   + ++q+w+   q +  ++ + S+++A
  CCD26718.1 353 -PDADVQDWDNGVQGW-IVWCSLSVMVA 378
                 .446778887777777.57777777777 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.66
   Claudin_2  78 v 78 
                 +
  CCD26718.1 477 Y 477
                 2 PP

>> DUF4229  Protein of unknown function (DUF4229)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3       1.7     1e+04       9      38 ..      47      79 ..      46      80 .. 0.48
   2 ?    9.2   8.3   0.00021       1.3       2      52 ..     456     506 ..     455     509 .. 0.91
   3 ?   -0.8   0.0      0.29   1.7e+03      20      60 ..     667     707 ..     658     711 .. 0.75

  Alignments for each domain:
  == domain 1  score: -3.3 bits;  conditional E-value: 1.7
     DUF4229  9 aLfvvltavillva...rliglpvpllvaallA 38
                +L+++++++i  +    ++ ++++  l +allA
  CCD26718.1 47 GLIIGTLVLISNFQfglQTGWVSMMSLPSALLA 79
                566666666654440003334446666666666 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00021
     DUF4229   2 lYtlaRlaLfvvltavillvarliglpvpllvaallAlvvalplSmvllkk 52 
                 +Yt++  +++v + + ++++ +l+g+++  ++a++ Alv++  lS+++ + 
  CCD26718.1 456 KYTTVVSGIIVSSIMCLVFLIYLFGIDIIPVYAMVSALVISVFLSILAVRA 506
                 688888899999***************999****************98776 PP

  == domain 3  score: -0.8 bits;  conditional E-value: 0.29
     DUF4229  20 lvarliglpvpllvaallAlvvalplSmvllkklRdrataq 60 
                   ++++g+ +    ++++A  + + +S + l + + +++a+
  CCD26718.1 667 PSGVAVGVGIYNAPSFTIARFLGGTISHIWLGRHKGEMNAK 707
                 34455666688888999999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       745  (0.0415528); expected 358.6 (0.02)
Passed bias filter:                      408  (0.0227564); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         5  (0.000278878); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.27s 00:00:00.92 Elapsed: 00:00:00.43
# Mc/sec: 5162.30
//
Query:       CCD26719.1  [L=185]
Description: hypothetical protein NDAI_0I01500 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       594  (0.0331307); expected 358.6 (0.02)
Passed bias filter:                      427  (0.0238162); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.26s 00:00:00.67 Elapsed: 00:00:00.42
# Mc/sec: 1322.19
//
Query:       CCD26720.1  [L=328]
Description: hypothetical protein NDAI_0I01510 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      5e-26   90.9   5.7    5.3e-12   46.0   0.1    4.2  4  CBS       CBS domain
  ------ inclusion threshold ------
      0.094   12.8   1.3        1.7    8.8   0.1    3.0  3  HTH_9     RNA polymerase III subunit RPC82 helix-turn-helix d


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0016        15       9      56 ..      47      95 ..      37      96 .. 0.80
   2 !   16.9   0.1   7.2e-07    0.0064      10      56 ..     130     181 ..     117     182 .. 0.83
   3 !   22.3   0.1   1.5e-08   0.00014       7      45 ..     203     241 ..     194     253 .. 0.79
   4 !   46.0   0.1   5.9e-16   5.3e-12       4      56 ..     267     324 ..     263     325 .. 0.87

  Alignments for each domain:
  == domain 1  score: 6.1 bits;  conditional E-value: 0.0016
                CEEEETTSBHHHHHHHHHHHT.SSEEEEEETTT.BEEEEEEHHHHHHHHH CS
         CBS  9 vvtvppdttleealelmrekg.vsrlPVVdedg.klvGivtlrDllrall 56
                +++++ +  +++ l+ + +++ v + P  d++  ++ G++t +D ++++ 
  CCD26720.1 47 LIVLDTSLLVKKSLNVLLQNNiV-SAPLWDSQTsRFAGLLTSSDFINVIQ 95
                56666667777778887788966.99999988899***********9986 PP

  == domain 2  score: 16.9 bits;  conditional E-value: 7.2e-07
                 EEEETTSBHHHHHHHHHHHTSSEEEEEETTTB.....EEEEEEHHHHHHHHH CS
         CBS  10 vtvppdttleealelmrekgvsrlPVVdedgk.....lvGivtlrDllrall 56 
                  +++p+ +l ea  +m e++ +r+P +d+d++     +v ++t+  +l++++
  CCD26720.1 130 ASIHPSRPLYEACIKMMESRSGRIPLIDKDEEtrreiVVSVLTQYRILKFVA 181
                 5899****9999988669999******666644478899**********986 PP

  == domain 3  score: 22.3 bits;  conditional E-value: 1.5e-08
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEE CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVVdedgklvGi 45 
                  ++ +++ +t++ ++++l++++gvs++P+Vde+g lv +
  CCD26720.1 203 QNLKSCNMTTPVIDVIQLLTHAGVSSVPIVDENGFLVNV 241
                 46679**************9999***********77655 PP

  == domain 4  score: 46.0 bits;  conditional E-value: 5.9e-16
                 HSBS.....SCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   4 imtr.....dvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllrall 56 
                 +m+r      v t++ ++ l+ +++ +r+++v+r++VVde g+l G++tl+D+l+++l
  CCD26720.1 267 LMRRsddfeGVYTCTRNDKLSTIMDNIRKSRVHRFFVVDEAGRLMGVLTLSDILKYIL 324
                 466666555678***************9999*************************96 PP

>> HTH_9  RNA polymerase III subunit RPC82 helix-turn-helix domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00019       1.7      43      58 ..      55      70 ..      44      72 .. 0.88
   2 ?    1.1   0.1     0.049   4.4e+02      48      61 ..     168     181 ..     165     182 .. 0.88
   3 ?   -2.7   0.0      0.72   6.4e+03      11      25 ..     256     270 ..     254     272 .. 0.78

  Alignments for each domain:
  == domain 1  score: 8.8 bits;  conditional E-value: 0.00019
                HHHHHHHHHHHTTSEE CS
       HTH_9 43 qVkksLvvLiqhrlVq 58
                +VkksL vL+q+++V+
  CCD26720.1 55 LVKKSLNVLLQNNIVS 70
                7*************97 PP

  == domain 2  score: 1.1 bits;  conditional E-value: 0.049
                 HHHHHHTTSEEEEE CS
       HTH_9  48 LvvLiqhrlVqyle 61 
                 ++vL+q r+ ++++
  CCD26720.1 168 VSVLTQYRILKFVA 181
                 689*********86 PP

  == domain 3  score: -2.7 bits;  conditional E-value: 0.72
                 STTHHHHHHHHHHHH CS
       HTH_9  11 FGevvakVvetLlrk 25 
                 + +++ +V e L+r+
  CCD26720.1 256 YNDLSLTVGEALMRR 270
                 667778999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       446  (0.0248759); expected 358.6 (0.02)
Passed bias filter:                      404  (0.0225333); expected 358.6 (0.02)
Passed Vit filter:                        24  (0.00133861); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.24s 00:00:00.70 Elapsed: 00:00:00.39
# Mc/sec: 2491.79
//
Query:       CCD26721.1  [L=644]
Description: hypothetical protein NDAI_0I01520 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.5e-13   48.6   3.3     0.0017   18.6   0.2    4.5  4  ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
    1.3e-11   44.8  14.0    0.00036   21.3   0.1    5.8  6  WD40         WD domain, G-beta repeat
    5.6e-07   28.8   0.1    9.7e-05   21.5   0.0    3.3  4  Ge1_WD40     WD40 region of Ge1, enhancer of mRNA-decapping p


Domain annotation for each model (and alignments):
>> ANAPC4_WD40  Anaphase-promoting complex subunit 4 WD40 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.2   2.8e-07    0.0017      30      89 ..     324     383 ..     297     386 .. 0.86
   2 !   15.8   0.1   2.1e-06     0.013       9      69 ..     387     447 ..     385     452 .. 0.87
   3 !   11.0   0.1   6.6e-05      0.39      35      91 ..     455     512 ..     451     513 .. 0.84
   4 ?   -0.9   0.0      0.34     2e+03      36      66 ..     552     582 ..     532     588 .. 0.75

  Alignments for each domain:
  == domain 1  score: 18.6 bits;  conditional E-value: 2.8e-07
  ANAPC4_WD40  30 wtleedkedsevrsLaWkpdgklLavaysdgevrlldaesgkvvhslsvksekavtclgW 89 
                    l e ++d +v+s+ W+ d+  + ++ sdg+ ++ d+e+ +++++++ +   ++ +l+W
   CCD26721.1 324 KMLVEYNDDITVSSIIWSDDDCHISIGKSDGNTEIWDVETMRLIRTMRSGLGVRIGSLSW 383
                  4446779999*************************************9999999999999 PP

  == domain 2  score: 15.8 bits;  conditional E-value: 2.1e-06
  ANAPC4_WD40   9 LiAlatedgellvf..RlngqrvwtleedkedsevrsLaWkpdgklLavaysdgevrlldaes 69 
                  LiA +  +ge++++  R++ + v +   +++++ev +La+k dg  La + +d+++ + d  +
   CCD26721.1 387 LIASGARSGEIQINdvRIKEHIVHNW--SEHKGEVCGLAYKSDGLQLASGGNDNTMMIWDTRK 447
                  78888888888875448899999999..89****************************99876 PP

  == domain 3  score: 11.0 bits;  conditional E-value: 6.6e-05
  ANAPC4_WD40  35 dkedsevrsLaWkp.dgklLava..ysdgevrlldaesgkvvhslsvksekavtclgWge 91 
                   ++   v++L+W p + +lLa +    d  +++ ++ +g  + s++ +s+  v++l+Wg+
   CCD26721.1 455 RNHTAAVKALSWCPyKPNLLASGggQTDKYIHFWNSTNGARIGSINSGSQ--VSSLHWGQ 512
                  578899******984568999972256779***************99999..******86 PP

  == domain 4  score: -0.9 bits;  conditional E-value: 0.34
  ANAPC4_WD40  36 kedsevrsLaWkpdgklLavaysdgevrlld 66 
                  +++s++   + +pdg+ La +  d ++++++
   CCD26721.1 552 AHESRICTSQLSPDGTTLATVGGDENLKFFK 582
                  5666677777899999999999999888765 PP

>> WD40  WD domain, G-beta repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.59   3.5e+03      19      38 .]     300     317 ..     294     317 .. 0.68
   2 !    7.3   1.3    0.0015       9.2      13      38 .]     335     360 ..     324     360 .. 0.88
   3 ?   -2.9   0.0       2.7   1.6e+04      22      34 ..     385     397 ..     377     399 .. 0.66
   4 !   21.3   0.1     6e-08   0.00036       4      38 .]     409     444 ..     406     444 .. 0.90
   5 !   13.3   0.0     2e-05      0.12       8      38 .]     455     489 ..     449     489 .. 0.78
   6 !    7.3   0.0    0.0016       9.5       8      37 ..     551     581 ..     544     582 .. 0.76

  Alignments for each domain:
  == domain 1  score: -0.8 bits;  conditional E-value: 0.59
                 ETTSSEEEEE.ETTSEEEEEE CS
        WD40  19 spdgawlasG.sdDgtvriWd 38 
                 s ++++   G   D+ v++Wd
  CCD26721.1 300 SANNTM---GiALDNAVYLWD 317
                 555555...444499*****9 PP

  == domain 2  score: 7.3 bits;  conditional E-value: 0.0015
                 EEEEEEETTSSEEEEE.ETTSEEEEEE CS
        WD40  13 vtslafspdgawlasG.sdDgtvriWd 38 
                 v+s+ +s+d   ++ G s Dg+  iWd
  CCD26721.1 335 VSSIIWSDDDCHISIGkS-DGNTEIWD 360
                 78999********99*88.*******9 PP

  == domain 3  score: -2.9 bits;  conditional E-value: 2.7
                 SSEEEEEETTSEE CS
        WD40  22 gawlasGsdDgtv 34 
                 ga++asG + g +
  CCD26721.1 385 GALIASGARSGEI 397
                 4558999877766 PP

  == domain 4  score: 21.3 bits;  conditional E-value: 6e-08
                 EEEEESS.SSEEEEEEETTSSEEEEEETTSEEEEEE CS
        WD40   4 lrtltGH.ssvtslafspdgawlasGsdDgtvriWd 38 
                 ++ ++ H + v++la+ +dg  lasG+ D+t +iWd
  CCD26721.1 409 VHNWSEHkGEVCGLAYKSDGLQLASGGNDNTMMIWD 444
                 788999*555*************************9 PP

  == domain 5  score: 13.3 bits;  conditional E-value: 2e-05
                 ESS.SSEEEEEEETTSSEEE.EEE..TTSEEEEEE CS
        WD40   8 tGH.ssvtslafspdgawla.sGs..dDgtvriWd 38 
                 + H   v +l+++p+++ l+ sG+   D+ +++W+
  CCD26721.1 455 RNHtAAVKALSWCPYKPNLLaSGGgqTDKYIHFWN 489
                 678666************752765455*******8 PP

  == domain 6  score: 7.3 bits;  conditional E-value: 0.0016
                 ESS.SSE.EEEEEETTSSEEEE.EETTSEEEEE CS
        WD40   8 tGH.ssv.tslafspdgawlas.GsdDgtvriW 37 
                  +H s + ts+  spdg+ la+ G+ D +++++
  CCD26721.1 551 HAHeSRIcTSQ-LSPDGTTLATvGG-DENLKFF 581
                 58977795555.9*******96267.9988876 PP

>> Ge1_WD40  WD40 region of Ge1, enhancer of mRNA-decapping protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.25   1.5e+03     181     216 ..     326     361 ..     318     366 .. 0.75
   2 ?    0.4   0.0     0.042   2.5e+02     192     238 ..     378     419 ..     361     431 .. 0.79
   3 ?    1.5   0.0     0.019   1.1e+02     116     134 ..     456     474 ..     450     526 .. 0.81
   4 !   21.5   0.0   1.6e-08   9.7e-05     183     225 ..     550     592 ..     530     596 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 0.25
    Ge1_WD40 181 llkieehsliveaafspdGtalatasedGevkffqv 216
                 l++ +++ ++++ ++s d   +++  +dG    + v
  CCD26721.1 326 LVEYNDDITVSSIIWSDDDCHISIGKSDGNTEIWDV 361
                 556666677888888888888888888888888877 PP

  == domain 2  score: 0.4 bits;  conditional E-value: 0.042
    Ge1_WD40 192 eaafspdGtalatasedGevkffqvyledeeeprCLheWkPhdGksl 238
                  +++s  G+ +a  +  Ge++   v ++    ++ +h+W  h+G  +
  CCD26721.1 378 IGSLSWLGALIASGARSGEIQINDVRIK----EHIVHNWSEHKGE-V 419
                 5678888999999999999988888775....4689******996.4 PP

  == domain 3  score: 1.5 bits;  conditional E-value: 0.019
    Ge1_WD40 116 tvvsesdrviWCPyipeed 134
                 ++++ ++ ++WCPy p+  
  CCD26721.1 456 NHTAAVKALSWCPYKPNLL 474
                 67888999******88764 PP

  == domain 4  score: 21.5 bits;  conditional E-value: 1.6e-08
    Ge1_WD40 183 kieehsliveaafspdGtalatasedGevkffqvyledeeepr 225
                    ++s i ++ +spdGt+lat   d  +kff+++   ++e+r
  CCD26721.1 550 IHAHESRICTSQLSPDGTTLATVGGDENLKFFKIFEPRRQERR 592
                 3345589***************************988777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       587  (0.0327403); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.26s 00:00:00.82 Elapsed: 00:00:00.38
# Mc/sec: 5036.43
//
Query:       CCD26722.1  [L=247]
Description: hypothetical protein NDAI_0I01530 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
  ------ inclusion threshold ------
       0.07   13.3   0.5       0.35   11.0   0.1    2.1  2  Importin_rep_6  Importin repeat 6


Domain annotation for each model (and alignments):
>> Importin_rep_6  Importin repeat 6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.066   1.2e+03      88     106 ..     113     131 ..      98     133 .. 0.79
   2 ?   11.0   0.1     2e-05      0.35      30      65 ..     178     213 ..     156     218 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.066
  Importin_rep_6  88 eylpalqtllplissylqd 106
                     + +++l+  l+liss l++
      CCD26722.1 113 SSIQHLKATLSLISSLLNE 131
                     5678999999*****9997 PP

  == domain 2  score: 11.0 bits;  conditional E-value: 2e-05
  Importin_rep_6  30 tkgvsanlsdvyervkereneddeynedvdddyddy 65 
                      + +s+n+++vy r++e ++         + dyd+y
      CCD26722.1 178 KQNISTNVAEVYSRIQENNDRVFYSISRAQADYDKY 213
                     6789************98776555556778888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       590  (0.0329076); expected 358.6 (0.02)
Passed bias filter:                      449  (0.0250432); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2049.26
//
Query:       CCD26723.1  [L=295]
Description: hypothetical protein NDAI_0I01540 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       432  (0.024095); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.21s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2472.68
//
Query:       CCD26724.1  [L=276]
Description: hypothetical protein NDAI_0I01550 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.4e-05   23.0   0.0    0.00016   21.7   0.0    1.6  2  CENP-O    Cenp-O kinetochore centromere component
  ------ inclusion threshold ------
      0.016   15.0   0.8      0.016   15.0   0.8    1.8  2  DivIC     Septum formation initiator


Domain annotation for each model (and alignments):
>> CENP-O  Cenp-O kinetochore centromere component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.57   5.1e+03     102     124 ..      17      39 ..       5      69 .. 0.47
   2 !   21.7   0.0   1.8e-08   0.00016      16      66 ..     200     248 ..     183     260 .. 0.84

  Alignments for each domain:
  == domain 1  score: -2.8 bits;  conditional E-value: 0.57
      CENP-O 102 eLvayhnRldavedLrealglea 124
                 eL     ++da++d  + +++++
  CCD26724.1  17 ELEGLRAKRDALKDPGKDIQKDT 39 
                 33333333333333333333222 PP

  == domain 2  score: 21.7 bits;  conditional E-value: 1.8e-08
      CENP-O  16 ggnvLGiridvfsrgrflepYYvlLkrpseeekelrvhrHTvPafipLakl 66 
                 +g++LG+r++  s+ + ++ YY+lLk++++++  +  ++H +P +i+++++
  CCD26724.1 200 KGDMLGVRFELPSS-EGAQKYYLLLKKETASDY-WIPYKHSLPNIIDVNEY 248
                 6779******9887.45789*******998877.*************9986 PP

>> DivIC  Septum formation initiator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.8   1.7e-06     0.016      18      61 ..       3      46 ..       1      52 [. 0.87
   2 ?   -3.1   0.2      0.78     7e+03      26      45 ..     151     170 ..     148     175 .. 0.50

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 1.7e-06
                HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-XXXXXXXXXXX CS
       DivIC 18 aykqlkqeiaalqaelaklkaeneeLeaevkdLksdedyieerA 61
                ++ +l+q+iaal+ el+ l+a++++L++  kd ++d +  e  A
  CCD26724.1  3 DITDLEQDIAALKVELEGLRAKRDALKDPGKDIQKDTSIAETNA 46
                7889***************************9988887776655 PP

  == domain 2  score: -3.1 bits;  conditional E-value: 0.78
                 HHHHHHHHHHHHHHHHHHHH CS
       DivIC  26 iaalqaelaklkaeneeLea 45 
                 i++++++ ++l+ +   Le+
  CCD26724.1 151 IETKERQSDNLQRTLILLED 170
                 44455555555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       555  (0.0309554); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.25s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 2021.05
//
Query:       CCD26725.1  [L=512]
Description: hypothetical protein NDAI_0I01560 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.8e-37  127.5   0.1    1.8e-36  124.9   0.0    2.2  2  ABC1      ABC1 family
     0.0095   15.3   0.2       0.04   13.3   0.0    1.9  2  Pkinase   Protein kinase domain


Domain annotation for each model (and alignments):
>> ABC1  ABC1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.15   1.3e+03      12      33 ..      22      46 ..      15      58 .. 0.75
   2 !  124.9   0.0     2e-40   1.8e-36       2     118 ..     185     300 ..     184     301 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.15
        ABC1 12 aefdeePiAaASiaqVh...rAklk 33
                ++++++ i +A i q h   +A lk
  CCD26725.1 22 DHYSSRSISSACINQFHthsKAYLK 46
                6788999********9944445555 PP

  == domain 2  score: 124.9 bits;  conditional E-value: 2e-40
        ABC1   2 elgkkleeiFaefdeePiAaASiaqVhrAklk.sgeeVavKvqrpgvkkriksDlellkllakllkkflkelrldleelvdefskslleEldferEAkn 99 
                 elg+++e+ F++fd+ PiAaASi+qVh+A+l  s e+V+vKvq+pgvk++i+sDl++l ll+++ + ++ +l+  l+++v++++k+l++E+d+ rEAk+
  CCD26725.1 185 ELGSNWESKFESFDKIPIAAASIGQVHKAVLArSREKVVVKVQYPGVKDSIDSDLNNLLLLLTASRLLPRGLF--LDKTVANARKELKWECDYMREAKA 281
                 89******************************899**************************************..************************ PP

        ABC1 100 aekfrenfaklkevkvPkv 118
                  +kf+e +++++ +kvP+v
  CCD26725.1 282 LQKFEELLKDDPIFKVPHV 300
                 *****************99 PP

>> Pkinase  Protein kinase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.11   9.8e+02      11      31 ..     206     226 ..     202     239 .. 0.86
   2 !   13.3   0.0   4.5e-06      0.04      31     149 ..     261     384 ..     256     396 .. 0.83

  Alignments for each domain:
  == domain 1  score: -1.1 bits;  conditional E-value: 0.11
                 SSEEEEEEEETTTTEEEEEEE CS
     Pkinase  11 sfGkVykaveketgkivAvKk 31 
                 s G+V kav ++++++v+vK+
  CCD26725.1 206 SIGQVHKAVLARSREKVVVKV 226
                 579*****************7 PP

  == domain 2  score: 13.3 bits;  conditional E-value: 4.5e-06
                 EEECHCHCHHHHHHHHHHHHHHHHHS....CTTB--EEEEEEE.SSEEEEEEE--TTEBHHHHHHHHSS--HHHHHHHHHHHHH.HHHHHHHTTEE-SS CS
     Pkinase  31 kikkekakkkkekkvlrEikilkklk....hpnivrlyevfee.kdelylvleyveggeladllerkgslseeeakkiakqile.gleylHskgiiHrD 123
                 ++++ +++ k e +++rE k l+k++     + i ++ +vfe+ +++ ++ + y+eg  +++l ++  s ++++  +i ++il+  le +   + +  D
  CCD26725.1 261 TVANARKELKWECDYMREAKALQKFEellkDDPIFKVPHVFEKlTTTNVITMGYMEGAPIMKLPSD--STTQATRDFISENILRlCLEEIAVFKYMQTD 357
                 5555555444446899******99887766899**********66667799*******99999985..778888889999999768999999******* PP

                 -SGGGEEEETTTE.EEE-SGTTSEESS CS
     Pkinase 124 lKpeNiLidekge.lKitDFGlakele 149
                    +N+L++++ + + + DFG ++ + 
  CCD26725.1 358 PNWANFLYNKQTHrIELLDFGASRAFP 384
                 *********55555*********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       598  (0.0333538); expected 358.6 (0.02)
Passed bias filter:                      494  (0.0275531); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.27s 00:00:00.81 Elapsed: 00:00:00.42
# Mc/sec: 3686.33
//
Query:       CCD26726.1  [L=776]
Description: hypothetical protein NDAI_0I01570 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.7e-23   80.7   0.0      3e-22   78.8   0.0    2.1  2  OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fol
    2.5e-22   79.2   1.2    3.4e-22   78.8   0.0    1.9  2  HA2          Helicase associated domain (HA2)
    5.9e-11   42.7   0.0    1.8e-10   41.1   0.0    1.8  1  Helicase_C   Helicase conserved C-terminal domain
    7.1e-10   38.9   0.2    1.2e-09   38.2   0.2    1.3  1  DEAD         DEAD/DEAH box helicase
    1.4e-06   28.6   0.1    4.2e-06   27.1   0.1    1.8  1  AAA_22       AAA domain
    3.4e-05   23.6   0.1    8.9e-05   22.2   0.1    1.7  1  SRP54        SRP54-type protein, GTPase domain
    0.00017   22.0   0.1    0.00032   21.1   0.1    1.4  1  AAA_19       AAA domain
     0.0004   20.4   0.1    0.00081   19.4   0.1    1.5  1  Flavi_DEAD   Flavivirus DEAD domain
    0.00051   19.8   0.0    0.00086   19.1   0.0    1.3  1  AAA_30       AAA domain
     0.0019   18.7   0.1      0.033   14.7   0.0    2.3  2  AAA_23       AAA domain
     0.0035   17.4   0.2       0.27   11.2   0.2    2.5  1  ResIII       Type III restriction enzyme, res subunit
  ------ inclusion threshold ------
      0.037   13.5   0.1       0.13   11.8   0.0    1.9  3  AAA_7        P-loop containing dynein motor region
       0.04   13.2   0.0      0.063   12.5   0.0    1.3  1  DUF2075      Uncharacterized conserved protein (DUF2075)
      0.043   12.9   0.0      0.088   11.9   0.0    1.5  1  T2SSE        Type II/IV secretion system protein


Domain annotation for each model (and alignments):
>> OB_NTP_bind  Oligonucleotide/oligosaccharide-binding (OB)-fold
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       7.4   9.5e+03       5      21 ..     227     243 ..     227     257 .. 0.78
   2 !   78.8   0.0   2.3e-25     3e-22       1      83 []     649     726 ..     649     726 .. 0.97

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 7.4
                  HHHHHTTCEEEEEETTC CS
  OB_NTP_bind   5 llaGlypqiarkdpskk 21 
                  +l+Gl+ q++++ p  k
   CCD26726.1 227 ILMGLLKQVVQRRPDLK 243
                  789******98887554 PP

  == domain 2  score: 78.8 bits;  conditional E-value: 2.3e-25
                  HHHHHHHHHTTCEEEEEETTCCEEETTTCEEEEE-TTSTTTTT...TSSSEEEEEEEEESSSEEEEEEEEE-HHHHHHHSTTT CS
  OB_NTP_bind   1 lraillaGlypqiarkdpskkdyktartktrvfihpsSvlaknekekepewvvytelvettklylrdltaidpawLllfagqi 83 
                  +r++l++G+++q+a+k   +k+y t+++++ v+ihps+vl      ++ ewv+y+e+v t+k+y+r++t ++p+wL+++a+++
   CCD26726.1 649 IRKALASGFFMQVAKKRSGGKGYITVKDNQDVLIHPSTVLG-----HDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIELAPAY 726
                  89************99999999*******************.....6*********************************985 PP

>> HA2  Helicase associated domain (HA2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   2.6e-25   3.4e-22       1     108 []     495     583 ..     495     583 .. 0.90
   2 ?   -3.3   0.5       8.5   1.1e+04      80      87 ..     761     768 ..     739     776 .] 0.41

  Alignments for each domain:
  == domain 1  score: 78.8 bits;  conditional E-value: 2.6e-25
         HA2   1 AlelLvalgALdeegnlTelGrkmaelPlsprlakmLlaaaeleegcldevitivAalsveeifleeneeekeeeeeeeekakkkrkeeekarrklahk 99 
                 Ale L +l +Ld+egnlT+lGr  +++Pl+p+la mL+ +  +e++c +e++tivA+lsv ++f+++++++               k+ ++a++ +ah+
  CCD26726.1 495 ALEELNYLACLDDEGNLTALGRLASQFPLDPMLAVMLIGS--FEFQCSQEILTIVAMLSVPNVFIRPSKDK---------------KRSDDAKNIFAHP 576
                 899*************************************..666***********************653...............4455556789999 PP

         HA2 100 daegDhltl 108
                 d  gDh+tl
  CCD26726.1 577 D--GDHITL 583
                 9..***997 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 8.5
         HA2  80 ekakkkrk 87 
                 +++k+k++
  CCD26726.1 761 KEKKDKHS 768
                 12222222 PP

>> Helicase_C  Helicase conserved C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   1.4e-13   1.8e-10       5     110 ..     294     432 ..     289     433 .. 0.81

  Alignments for each domain:
  == domain 1  score: 41.1 bits;  conditional E-value: 1.4e-13
                 HHHHHHHHTTTTSEEEEEESSHHHHHH.HHHH...HHHT.........TSTEEEESTTSTHHHHHHHHHHHHTTS.....SSEEEESGGGTSSSTSTTE CS
  Helicase_C   5 allellkleeeggkilifvntidrlek.vkll...lekk.........gikvavlhgelpqnereeileqfnkge.....sdvLiatdvaerGidipkv 85 
                 ++l++ + +ee g+il+f++  d++e+ ++ +                 ++v +l+g+lp   +++i+e   + +     ++v+i+t++ae++++i+++
  CCD26726.1 294 TVLQI-HATEEAGDILLFLTGEDEIEDaCRKIsleG--DqlvrdegcgPLSVYPLYGSLPPHMQQRIFEPAPESHngrpgRKVVISTNIAETSLTIDGI 389
                 45555.58999************9988844443330..23445566867**********************84334556689***************** PP

                 SEEEESSSSSSH..................HHHHHHHTTSSST CS
  Helicase_C  86 nlVinfdlprnv..................tsyiqriGRtgRa 110
                  +V++ ++ ++                   +s++qr+GR+gR 
  CCD26726.1 390 VYVVDPGFSKQKvynprirvesllvspiskASAQQRAGRAGRT 432
                 *********5533677999999********************6 PP

>> DEAD  DEAD/DEAH box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.2   9.4e-13   1.2e-09       9     172 ..     105     255 ..      97     259 .. 0.79

  Alignments for each domain:
  == domain 1  score: 38.2 bits;  conditional E-value: 9.4e-13
                 HHHHTTCEEEEEESTTSSHHHHHHHHHHHHHHHSTTSTS-EEEEEESSHHHHHHHHHHHHHHTTTSTSEEEEEETTSSHHHHHHHHHTTCSEEEEEHHH CS
                 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
        DEAD   9 plilgggdvlvaaeTGsGKTlaflipvlqivyetkgktgpkalivePtreLaeqtlnnlkkfkkyidlrvlliiggvaardqlskldngvdivvgtpgr 107
                 ++  +++ ++  +eTGsGKT+   ip +  + e+ + +++++ +  P r  a  +++++ + ++ ++l ++  + g + r + ++  n++ + ++t g+
  CCD26726.1 105 KIYQENQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQIACTQPRRVAAMSVAQRVAEEMD-VKLGEE--V-GYSIRFENKTS-NKTILKYMTDGM 196
                 344466677889********97..5555446555788888*******************99999.344444..3.46677777777.889999****** PP

                 HHH.HHHCTSSHCTTEEEEEEETHHHHHHTTTHHHHHHHHHHSHHHCTTSTTTSEEEEEESSBS.HH CS
                 xxx.xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xx RF
        DEAD 108 ldd.llstgklnlsqvrflVlDEadrlldqgfsdfinrilnqlpqitcdgklqrqvivlSATlp.kd 172
                 l++  ++++   l++ ++++lDEa++       d +  +l+q+ q   d k    +i++SATl  ++
  CCD26726.1 197 LLReAMEDHD--LKRYSCIILDEAHERTLA--TDILMGLLKQVVQRRPDLK----IIIMSATLDaEK 255
                 **94556666..*************98886..899999999*987777766....********8555 PP

>> AAA_22  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.1   3.3e-09   4.2e-06       4     112 ..     109     231 ..     105     255 .. 0.71

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 3.3e-09
      AAA_22   4 tagilvvtGesGtGKTtllrrlleqldeeakaeeerpevvfvtlpsstsskdllrellralglelka...................erlsseelleale 83 
                 + +i+v +Ge+G+GKTt + +++  ++      + + +++ +t p      +++++++++++++l +                   +  +   l+ea+e
  CCD26726.1 109 ENQIMVFVGETGSGKTTQIPQFVLFDE-M---PHLENTQIACTQPRRVAAMSVAQRVAEEMDVKLGEevgysirfenktsnktilkYMTDGMLLREAME 203
                 5789********************983.2...224666666666666699999**********9999********976666666644444444446666 PP

      AAA_22  84 qalraravielliiDEaqhlr.seealeeL 112
                 ++  +r+   ++i+DEa+  +   ++l  L
  CCD26726.1 204 DHDLKRYS--CIILDEAHERTlATDILMGL 231
                 66666666..********843234444444 PP

>> SRP54  SRP54-type protein, GTPase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   6.9e-08   8.9e-05       2     131 ..     111     257 ..     110     267 .. 0.77

  Alignments for each domain:
  == domain 1  score: 22.2 bits;  conditional E-value: 6.9e-08
                 EEEEEEESTTSSHHHHHHHHHHHHHHT.TS-EEEEEESTSSTTHHHHHHHHHHHTTEEEEE..........SSTTSCHHH......HHHHHHHHHHHTT CS
       SRP54   2 nvillvGlqGaGKTttlaKLaallkke.gkkvllvaaDtfRaaAveQLktlaeklgvpvik..........kkeeadpaa......vakeavekakeek 83 
                 +++++vG +G+GKTt + +     +    +++ ++++   R+aA+   + +ae+++v++ +          k++++   +      +++ea+e  + ++
  CCD26726.1 111 QIMVFVGETGSGKTTQIPQFVLFDEMPhLENTQIACTQPRRVAAMSVAQRVAEEMDVKLGEevgysirfenKTSNKTILKymtdgmLLREAMEDHDLKR 209
                 5789***************99776666578999************************987777788887642222233331111115678899999999 PP

                 SSEEEEEE--SSTTHHHHHHHHHHHHHHHSSSEEEEEEETTBHTHHHH CS
       SRP54  84 idvvlvDTaGrlqndkelmeelkkikkvvkpdevllvldattgqeavk 131
                 + ++++D a      ++++  l k     +pd ++++++at+  e+++
  CCD26726.1 210 YSCIILDEAHERTLATDILMGLLKQVVQRRPDLKIIIMSATLDAEKFQ 257
                 ********9877777776666666555668***********9887765 PP

>> AAA_19  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   2.5e-07   0.00032       7     129 ..     107     239 ..     100     247 .. 0.63

  Alignments for each domain:
  == domain 1  score: 21.1 bits;  conditional E-value: 2.5e-07
      AAA_19   7 alkekvllvtaGpGtGKTrvlkhivallvelggvkpeeillvaftgrAakelrerlaalgae..............atTiHrlalldfddlltealell 91 
                 + ++++++ ++  G+GKT+ + + v  + e+ +++  +i++  + + Aa+ +++r+a+ +++               +T  +  +l++ ++      ll
  CCD26726.1 107 YQENQIMVFVGETGSGKTTQIPQFVL-FDEMPHLENTQIACTQPRRVAAMSVAQRVAE-EMDvklgeevgysirfeNKTSNKT-ILKYMTDG----MLL 198
                 567899999**********9998774.4444445556666666666666666655521.111335555777777774444443.23222222....356 PP

      AAA_19  92 eeaeeekklqeeellivDEfqdvd...elqyrLlkallgek 129
                 +ea e+++l++  ++i DE+ + +   +  + Llk++++++
  CCD26726.1 199 REAMEDHDLKRYSCIILDEAHERTlatDILMGLLKQVVQRR 239
                 6888999**6666******9875432456778888888666 PP

>> Flavi_DEAD  Flavivirus DEAD domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   6.3e-07   0.00081       6     135 ..     112     250 ..     107     257 .. 0.67

  Alignments for each domain:
  == domain 1  score: 19.4 bits;  conditional E-value: 6.3e-07
                 EEEEE--TTS-TTTTHHHHHH.HHHHH..TT--EEEEESSHHHHHHHHHHT.TTS-EEE----.....---------SEEEEEHHHHHHHHHHT----- CS
  Flavi_DEAD   6 ltvldlhPGaGktrkvlpelv.keaie..rrlrtlvLaPtrvvlaemeeal.kglevryktsa.....vkeektgrelvdvmchatftkrllspvrkkn 95 
                 + v     G+Gkt ++ p++v  + +   ++ +     P rv +  +++ + ++++v+  +++     ++++++++ ++  m    + +  ++++  k+
  CCD26726.1 112 IMVFVGETGSGKTTQI-PQFVlFDEMPhlENTQIACTQPRRVAAMSVAQRVaEEMDVKLGEEVgysirFENKTSNKTILKYMTDGMLLREAMEDHDLKR 209
                 5555566788888764.44431232220123333344567776655554431345555544321111156889999*********************** PP

                 -SEEEEETTT--SHHHHHHHHHHHHHHHTT.S-EEEEEESS CS
  Flavi_DEAD  96 yeliimDeahflDPasiaarGyletkaeeg.eaalilltat 135
                 y  ii+Deah    a     G l++ ++++ + ++i+++at
  CCD26726.1 210 YSCIILDEAHERTLATDILMGLLKQVVQRRpDLKIIIMSAT 250
                 **********9888888889999998776537899999998 PP

>> AAA_30  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   6.7e-07   0.00086       5     111 ..      98     234 ..      96     247 .. 0.71

  Alignments for each domain:
  == domain 1  score: 19.1 bits;  conditional E-value: 6.7e-07
      AAA_30   5 eQaaavealltsgdrvavltGpAGtGKttalkalreaweaag...........grviglAptgkaAkvLa....eelg....ieastiakllkrlk... 81 
                 +Q++ + ++ ++++ ++v +G  G+GKtt + + +   e              +rv++++  +++A+++     ee+g    +e +t +k +   k   
  CCD26726.1  98 QQRDEFLKIYQENQ-IMVFVGETGSGKTTQIPQFVLFDEMPHlentqiactqpRRVAAMSVAQRVAEEMDvklgEEVGysirFENKTSNKTIL--Kymt 193
                 68888888888885.*****************999888877677899999999**************99944443333333334444444332..1335 PP

      AAA_30  82 .........grarlepgtllivDEagmv..dtkqlaallka 111
                          +  +l++ +++i DEa     +t+ l  llk+
  CCD26726.1 194 dgmllreamEDHDLKRYSCIILDEAHERtlATDILMGLLKQ 234
                 67788888866789999*******96422255555555555 PP

>> AAA_23  AAA domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.6e-05     0.033      18      85 ..     109     187 ..      96     303 .. 0.62
   2 ?    1.5   0.3      0.28   3.6e+02     142     182 ..     731     769 ..     631     776 .] 0.67

  Alignments for each domain:
  == domain 1  score: 14.7 bits;  conditional E-value: 2.6e-05
      AAA_23  18 skgltlItGpNGaGKTTildAiklaLygetprlsrks...............grgfeksdveiesegkvkay.veltfenkdgr 85 
                 ++ + +++G++G+GKTT     +++L+ e p l+++                +r +e+ dv+++   +v +y ++++ ++ +++
  CCD26726.1 109 ENQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQiactqprrvaamsvaQRVAEEMDVKLGE--EV-GYsIRFENKTSNKT 187
                 78999************5..579999999999999887877776666555554445555555433..22.22244444333332 PP

  == domain 2  score: 1.5 bits;  conditional E-value: 0.28
      AAA_23 142 rfeefelkdkkerleelekeleeledekkllekleqekeke 182
                 +f++ + k  +er+++  + + el d+k + ek+   k  +
  CCD26726.1 731 NFQKGDVKLSLERIQQKMERISELGDIKLKKEKK--DKHSK 769
                 3322222333333333333333333333333322..21111 PP

>> ResIII  Type III restriction enzyme, res subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.2   0.00021      0.27      29     169 ..     115     251 ..      86     253 .. 0.51

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 0.00021
                 EEESTTSTHHHHHHHHHHHH-S.....-EEEEESSHHHHHHHHHHGGGGTGG....GEEEESSS-B--..............-SEEEEEHHHHHHTH.. CS
      ResIII  29 ikmaTGtGKTlvaaklierllkkgkeekflflvprkslleqtleefkkflseaykeigkkvsgdkkka.......kekdstnkkilvttiqsldadsee 120
                 ++ +TG+GKT                                                         +       ++ + +n++i  t+  ++ a s  
  CCD26726.1 115 FVGETGSGKTTQ-------------------------------------------------------IpqfvlfdEMPHLENTQIACTQPRRVAAMSVA 158
                 444444444443.......................................................23333333222222333333322222222222 PP

                 .............................................HHHTTT-SEEEEETGGGTTS.T.....TTHHHHHT---SEEEEEESS- CS
      ResIII 121 e.......................................eeeseellrdrfdviiiDEaHrlgakk.....swreilekfkeavllglTATp 169
                 +                                       +e+ e+ + +r+ +ii DEaH  + ++       +++++  ++ +++ ++AT+
  CCD26726.1 159 QrvaeemdvklgeevgysirfenktsnktilkymtdgmllREAMEDHDLKRYSCIILDEAHERTLATdilmgLLKQVVQRRPDLKIIIMSATL 251
                 22223333333333333333332233333333334444444557788888999********88775356666888888888889999999997 PP

>> AAA_7  P-loop containing dynein motor region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.9e-05      0.13      29      87 ..     106     166 ..     100     175 .. 0.73
   2 ?   -3.6   0.0       5.2   6.6e+03      51      82 ..     229     260 ..     225     262 .. 0.76
   3 ?   -3.9   0.0       6.6   8.4e+03      11      28 ..     705     722 ..     701     723 .. 0.84

  Alignments for each domain:
  == domain 1  score: 11.8 bits;  conditional E-value: 9.9e-05
       AAA_7  29 llknkkpvllvGptGtGKtviikd..llkkldkekylsltinfsaqtsanqlqdiieskle 87 
                 + ++++ +++vG+tG+GKt+ i +  l++++++ + + + ++   +  a+++ + + ++++
  CCD26726.1 106 IYQENQIMVFVGETGSGKTTQIPQfvLFDEMPHLENTQIACTQPRRVAAMSVAQRVAEEMD 166
                 567788899*************997666777766666666666666666666666655555 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 5.2
       AAA_7  51 kdllkkldkekylsltinfsaqtsanqlqdii 82 
                 + llk++ +++   ++i +sa+ +a+++q+ +
  CCD26726.1 229 MGLLKQVVQRRPDLKIIIMSATLDAEKFQRYF 260
                 55677777777788899999999999999865 PP

  == domain 3  score: -3.9 bits;  conditional E-value: 6.6
       AAA_7  11 eilVptvdtvrysyllel 28 
                 + ++ tv +vr ++l+el
  CCD26726.1 705 KNYIRTVTSVRPEWLIEL 722
                 66899*********9986 PP

>> DUF2075  Uncharacterized conserved protein (DUF2075)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.9e-05     0.063       3      98 ..     112     219 ..     110     239 .. 0.71

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 4.9e-05
     DUF2075   3 vvlVtGvaGtGKtvvllnllael.........eddeeertavylsvNhplvlvlrealakkeekkkkkeafeklssfinnlsef....kkaeekkeepk 88 
                 +++  G++G+GKt    +++                + r+++ +sv ++  + +  +l ++  +++++ + + +++ i ++ +     ++a e+++ ++
  CCD26726.1 112 IMVFVGETGSGKTTQIPQFVLFDemphlentqIACTQPRRVAAMSVAQRVAEEMDVKLGEEV-GYSIRFENKTSNKTILKYMTDgmllREAMEDHDLKR 209
                 56667********9887766555225554333333366666777777777777777776666.5555555555555555555447999*********** PP

     DUF2075  89 edvvivDEAh 98 
                   ++i DEAh
  CCD26726.1 210 YSCIILDEAH 219
                 ********** PP

>> T2SSE  Type II/IV secretion system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.8e-05     0.088     103     146 ..      85     127 ..      61     152 .. 0.83

  Alignments for each domain:
  == domain 1  score: 11.9 bits;  conditional E-value: 6.8e-05
       T2SSE 103 ltlddlgaeealkekiaevlrkavrerglilvsGgTgsGKttll 146
                 +++ +++ e  ++++ +e+l+   +e++++++ G TgsGKtt +
  CCD26726.1  85 FDILKIRRELPVHQQRDEFLKIY-QENQIMVFVGETGSGKTTQI 127
                 55556666666778999999999.99999*************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       781  (0.0435607); expected 358.6 (0.02)
Passed bias filter:                      525  (0.0292822); expected 358.6 (0.02)
Passed Vit filter:                        76  (0.00423894); expected 17.9 (0.001)
Passed Fwd filter:                        14  (0.000780858); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.70u 0.28s 00:00:00.98 Elapsed: 00:00:00.44
# Mc/sec: 5260.20
//
Query:       CCD26727.1  [L=137]
Description: hypothetical protein NDAI_0I01580 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0063   16.6   0.7     0.0083   16.2   0.7    1.1  1  Rootletin  Ciliary rootlet component, centrosome cohesion


Domain annotation for each model (and alignments):
>> Rootletin  Ciliary rootlet component, centrosome cohesion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.7   4.6e-07    0.0083      17      87 ..      37     127 ..      33     131 .. 0.64

  Alignments for each domain:
  == domain 1  score: 16.2 bits;  conditional E-value: 4.6e-07
   Rootletin  17 LvskLqaKvlqYkkrcseleqrlle.ktselektkltlll.....................ssareleeeesadleealakLeeErqrsekla 87 
                 L sk q+ +lq  k  ++l +r+ + + +   +++                          +  r+  + e  dle ++++LeeE  rse+++
  CCD26727.1  37 LCSKFQESLLQATKELHSLTERISQyR-TPEVTQETV-AFelpqmmrflvdkreharrvyrEALRRKVSAEGWDLEDLFHELEEELFRSEEVL 127
                 678899999999999999999998842.222222221.1134555555555554444433333355555556677***************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       608  (0.0339115); expected 358.6 (0.02)
Passed bias filter:                      422  (0.0235373); expected 358.6 (0.02)
Passed Vit filter:                        41  (0.0022868); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.28s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 949.77
//
Query:       CCD26728.1  [L=524]
Description: hypothetical protein NDAI_0I01590 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-48  162.1   5.9    5.2e-48  161.5   5.9    1.2  1  Nab2       Nuclear abundant poly(A) RNA-bind protein 2 (Nab2)
    1.5e-17   63.3  69.7    3.6e-05   24.1   2.6    7.1  7  zf-CCCH_2  RNA-binding, Nab2-type zinc finger
    5.8e-17   61.3   8.3    5.8e-17   61.3   8.3    3.3  3  Nab2p_Zf1  Nuclear polyadenylated RNA-binding 2 protein CCCH 
  ------ inclusion threshold ------
       0.19   11.9   0.0       0.39   10.9   0.0    1.4  1  DUF2508    Protein of unknown function (DUF2508)


Domain annotation for each model (and alignments):
>> Nab2  Nuclear abundant poly(A) RNA-bind protein 2 (Nab2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.5   5.9   1.2e-51   5.2e-48       1      99 [.       1      99 [.       1     101 [. 0.98

  Alignments for each domain:
  == domain 1  score: 161.5 bits;  conditional E-value: 1.2e-51
        Nab2  1 msqeqiaenlkvivaeklktlenfnedvnyvaeyivlllsnGgtvesvvqelstlfdsvskealadvvqtaffalealqqGetvesivsklrgvsaaes 99
                msqeq++enlkvivaekl+++enfnedv+yvaeyivll++nGgtve+vvqelstlfd++s+ al +vvqtaffalealqqGe+ve+iv+k+r+++aa+s
  CCD26728.1  1 MSQEQYSENLKVIVAEKLNGVENFNEDVKYVAEYIVLLIMNGGTVETVVQELSTLFDTISSVALVNVVQTAFFALEALQQGEPVENIVNKIREMNAAAS 99
                9*********************************************************************************************99875 PP

>> zf-CCCH_2  RNA-binding, Nab2-type zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   7.0    0.0022       9.8       2      18 .]     233     250 ..     233     250 .. 0.99
   2 ?    4.0   3.0     0.017        76       2      18 .]     254     272 ..     254     272 .. 0.86
   3 !   20.1   3.5   1.4e-07   0.00063       2      18 .]     311     327 ..     310     327 .. 0.97
   4 ?   -1.1   1.7      0.67     3e+03       8      17 ..     348     357 ..     342     357 .. 0.73
   5 !   23.9   5.2   9.3e-09   4.2e-05       1      17 [.     402     418 ..     402     419 .. 0.96
   6 !   21.3   0.9   5.9e-08   0.00026       2      18 .]     425     441 ..     425     441 .. 0.99
   7 !   24.1   2.6     8e-09   3.6e-05       1      18 []     445     462 ..     445     462 .. 0.98

  Alignments for each domain:
  == domain 1  score: 6.8 bits;  conditional E-value: 0.0022
   zf-CCCH_2   2 CrffpnC.tnpkCpFaHP 18 
                 C+ fp+C  + +Cp aHP
  CCD26728.1 233 CKLFPHCpLGRSCPHAHP 250
                 *****************9 PP

  == domain 2  score: 4.0 bits;  conditional E-value: 0.017
   zf-CCCH_2   2 CrffpnCtnp..kCpFaHP 18 
                 C  +pnC+++   C + HP
  CCD26728.1 254 CSEYPNCPKApgTCEYLHP 272
                 889****6666***99999 PP

  == domain 3  score: 20.1 bits;  conditional E-value: 1.4e-07
   zf-CCCH_2   2 CrffpnCtnpkCpFaHP 18 
                 C+f+  C np+CpF HP
  CCD26728.1 311 CKFGSVCSNPSCPFGHP 327
                 ****************9 PP

  == domain 4  score: -1.1 bits;  conditional E-value: 0.67
   zf-CCCH_2   8 CtnpkCpFaH 17 
                 C+  +C+ aH
  CCD26728.1 348 CKDTNCTKAH 357
                 8888888888 PP

  == domain 5  score: 23.9 bits;  conditional E-value: 9.3e-09
   zf-CCCH_2   1 pCrffpnCtnpkCpFaH 17 
                 +C+++ +Ctn++C+F+H
  CCD26728.1 402 QCKYGTHCTNKRCKFRH 418
                 8**************** PP

  == domain 6  score: 21.3 bits;  conditional E-value: 5.9e-08
   zf-CCCH_2   2 CrffpnCtnpkCpFaHP 18 
                 Cr+++nCt+ +C F HP
  CCD26728.1 425 CRDGANCTRIDCLFGHP 441
                 ****************9 PP

  == domain 7  score: 24.1 bits;  conditional E-value: 8e-09
   zf-CCCH_2   1 pCrffpnCtnpkCpFaHP 18 
                 +C+f+  C+n+ C F+HP
  CCD26728.1 445 DCKFGLECKNAYCLFRHP 462
                 7****************9 PP

>> Nab2p_Zf1  Nuclear polyadenylated RNA-binding 2 protein CCCH zinc finger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   8.3   1.3e-20   5.8e-17       1      26 []     223     249 ..     223     249 .. 0.99
   2 ?   -1.4   0.3       0.5   2.2e+03      10      17 ..     254     261 ..     254     263 .. 0.79
   3 ?   -1.5   2.1      0.55   2.4e+03      14      21 ..     320     327 ..     317     330 .. 0.80

  Alignments for each domain:
  == domain 1  score: 61.3 bits;  conditional E-value: 1.3e-20
   Nab2p_Zf1   1 Nfvp.kKeGRCklFPrCPLGksCPHAH 26 
                 Nfv+ kKeGRCklFP+CPLG+sCPHAH
  CCD26728.1 223 NFVNqKKEGRCKLFPHCPLGRSCPHAH 249
                 9************************** PP

  == domain 2  score: -1.4 bits;  conditional E-value: 0.5
   Nab2p_Zf1  10 CklFPrCP 17 
                 C  +P CP
  CCD26728.1 254 CSEYPNCP 261
                 66689999 PP

  == domain 3  score: -1.5 bits;  conditional E-value: 0.55
   Nab2p_Zf1  14 PrCPLGks 21 
                 P CP G  
  CCD26728.1 320 PSCPFGHP 327
                 89999975 PP

>> DUF2508  Protein of unknown function (DUF2508)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.6e-05      0.39      11      39 ..     271     299 ..     266     311 .. 0.86

  Alignments for each domain:
  == domain 1  score: 10.9 bits;  conditional E-value: 8.6e-05
     DUF2508  11 kkeedeeLleeIektkeelesakslfens 39 
                 + eed eL++eI++t+ee  + ++++ +s
  CCD26728.1 271 HPEEDVELMKEIDRTREEFRKRRDALIAS 299
                 679****************9999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       994  (0.0554409); expected 358.6 (0.02)
Passed bias filter:                      581  (0.0324056); expected 358.6 (0.02)
Passed Vit filter:                        74  (0.00412739); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.27s 00:00:00.86 Elapsed: 00:00:00.44
# Mc/sec: 3565.73
//
Query:       CCD26729.1  [L=250]
Description: hypothetical protein NDAI_0I01600 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-26   91.8   3.0      6e-26   90.2   2.1    2.2  2  Ribosomal_S5    Ribosomal protein S5, N-terminal domain
    1.3e-22   79.0   0.0    2.3e-22   78.2   0.0    1.4  1  Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain


Domain annotation for each model (and alignments):
>> Ribosomal_S5  Ribosomal protein S5, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   2.1   6.7e-30     6e-26       1      65 []      77     141 ..      77     141 .. 0.98
   2 ?   -0.9   0.0      0.19   1.7e+03      23      31 ..     213     221 ..     204     224 .. 0.76

  Alignments for each domain:
  == domain 1  score: 90.2 bits;  conditional E-value: 6.7e-30
                   XEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTEEEEEEEEESSHHHHHHHHHHHHHHTEEE-- CS
  Ribosomal_S5   1 lkekvlkikrvqkvtkgGrrtsfsalvvvGdgnGlvGlGvgkakevatAirkAiekAkknlvpvp 65 
                   l+++v++ik+vqk+t++G+rt+f+a+vvvGd nG+vGlG++ akeva Air +i+ Ak++++p++
    CCD26729.1  77 LQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIR 141
                   799************************************************************96 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.19
                   EEEEEEEEE CS
  Ribosomal_S5  23 fsalvvvGd 31 
                    +a+v++G+
    CCD26729.1 213 KAAFVAIGN 221
                   579*****9 PP

>> Ribosomal_S5_C  Ribosomal protein S5, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.0   2.5e-26   2.3e-22       1      72 []     160     231 ..     160     231 .. 0.97

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 2.5e-26
                     EEEETTEEEEEEE--TT--EES-HHHHHHHHHHT--SEE---BS.-SSHHHHHHHHHHHHHHTTTT-.-GGGG CS
  Ribosomal_S5_C   1 tgkfgavkvllkpaprGtGiiaggavravlelaGikDvlakslg.srnpinvvkAtfeALkklrspeevaalR 72 
                     tgk g+v+v+l+paprG Gi+a++av+++l+laG++Dv+++s+g +r++ n+ kA+f A+ +++ +  +++l+
      CCD26729.1 160 TGKSGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGkTRTLENTLKAAFVAIGNTYAFL-TPDLW 231
                     69**************************************************************999.77776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       430  (0.0239835); expected 358.6 (0.02)
Passed bias filter:                      379  (0.0211389); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1797.13
//
Query:       CCD26730.1  [L=652]
Description: hypothetical protein NDAI_0I01610 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.5e-144  479.9   3.2     8e-144  479.6   3.2    1.1  1  Mon1      Trafficking protein Mon1


Domain annotation for each model (and alignments):
>> Mon1  Trafficking protein Mon1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  479.6   3.2  4.5e-148    8e-144       2     404 .]     185     651 ..     184     651 .. 0.94

  Alignments for each domain:
  == domain 1  score: 479.6 bits;  conditional E-value: 4.5e-148
                 HHH-SEEEEEEETTS-EEEESSS-HHHHHHHHHHHHHHHHHHH.HTT--EEEEEETT..EEEEEEEETTEEEEEEE-SS--HHHHHHHHHHHHHHHHHH CS
        Mon1   2 wkkkkkhffilSsAGKPIYsrygseeklsslmGviqaivsffeenekdelksitagd..tkfvflnkspliLvaiskteesesqlrkqLellysqllsi 98 
                 +k+ +k+ffi++sAGKPIYs+ g++++l+s+mG+i++i+++f+ ++ +++ksi++    ++++fl++sp+iLv +s+++e++++l kqL++l+s++ls+
  CCD26730.1 185 LKSYDKNFFIFTSAGKPIYSMDGDDQQLTSCMGIIHTIMNYFQLATFSDIKSISSMVsgQRVTFLDRSPIILVGYSTRGETHHELIKQLDVLHSYILSS 283
                 57899***************************************99*******998778**************************************** PP

                 HHHHHHHHHHHH-TT--TTTTTTT-H.HHHHHHHHH.HHHH-XXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXX..........XXXXXXXX. CS
        Mon1  99 LtksqleklfekrenfDLrrlLegtd.elldslidk.slelspslllsaleclklrkslRekinnillka......kkkk..........llfgllva. 178
                 L+++ql++lf+kr+nfDLr++Le td e+ld++++  s +l+p+l ++al+cl++++s+R+ki++++l +      k  +          ll+gl+++ 
  CCD26730.1 284 LSERQLSRLFAKRDNFDLRNFLEVTDfENLDEICHLlSDRLYPDLPFNALQCLPMSYSTRTKIHETMLAElsinktK--TdgkellprgtLLYGLIISp 380
                 ***********************************989999***************************999998542..35678899999********* PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXX CS
        Mon1 179 enklvsvlrpkkhtlhpsDlqlLfnliss.sesfkaedeesWiPiCLpkFnsngflyayvkfl...........eeekialvliSadkdaFfelkelke 265
                 +nkl+s++rpk+htlh++DlqlLf+li++ +++++ e++e+W P+C+pkFn+ngfly+y+kfl           + +k alvliSa+kdaFf lk++++
  CCD26730.1 381 NNKLCSIMRPKGHTLHTTDLQLLFSLIWNqFQNVN-ETQEMWAPVCFPKFNPNGFLYCYIKFLksepidkkitsRCRKPALVLISAQKDAFFPLKQFSN 478
                 *****************************999999.79***********************************9999********************** PP

                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXX..........XXXXXXXXXXXXXXXXXXX............... CS
        Mon1 266 kiiekleksellkelkealsskklsvsdipipllrHFiykskknvQfvmseleapys........eeerkrllklYqklhasvh............... 341
                 ++i+ l++++  + l+e ++ +++++s++++pl++HFiykskk+vQ++m+el+ +++         +++k++ ++Yq+lh+s+                
  CCD26730.1 479 NLIDVLRRKGDKSLLREICTPGGFTISEVGAPLIHHFIYKSKKHVQYTMPELNINFEipdletelLKYEKKMKNYYQELHNSIFdndgnsfnasilnfv 577
                 *******999555555555999******************************7666688888899999****************999999999999999 PP

                 .........XX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
        Mon1 342 .........ek.lkllyeesekltllawvtssfelYlvfnplvs.kkaliksankilkwikkeeerlFisegav 404
                          ++   +l++e  k+++law+t++felYlv+n++vs k++++ksa+ki++w+k++++rlFi++gav
  CCD26730.1 578 nwydtsledAEfDGFLKKEPVKVMGLAWLTPKFELYLVCNNGVSdKEKILKSAKKIVSWCKRHQSRLFIQDGAV 651
                 9988776542255899****************************9*************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       672  (0.0374812); expected 358.6 (0.02)
Passed bias filter:                      492  (0.0274416); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.44
# Mc/sec: 4453.35
//
Query:       CCD26731.1  [L=441]
Description: hypothetical protein NDAI_0I01620 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.1e-17   63.8  16.9    2.1e-17   63.8  16.9    1.7  2  FA_desaturase  Fatty acid desaturase
    3.8e-13   49.4   0.0    7.6e-13   48.4   0.0    1.5  1  Cyt-b5         Cytochrome b5-like Heme/Steroid binding domain


Domain annotation for each model (and alignments):
>> FA_desaturase  Fatty acid desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   1.3     0.034     3e+02     129     176 ..      35      83 ..      25      89 .. 0.69
   2 !   63.8  16.9   2.4e-21   2.1e-17      10     234 ..      78     285 ..      67     290 .. 0.72

  Alignments for each domain:
  == domain 1  score: 1.1 bits;  conditional E-value: 0.034
  FA_desaturase 129 ksrrrkwrllawlllllawlglwlalllllglall..lwlvplllllfll 176
                    ++ + +w  + +++++++ +g++la++   +l+++  ++ +++ +++ ++
     CCD26731.1  35 WYLKINWLNMILVVFIPI-IGFYLAISKHVPLQMNilYFSLAYYVIAGIT 83 
                    556667778888888874.8888888888888888886666655555443 PP

  == domain 2  score: 63.8 bits;  conditional E-value: 2.4e-21
  FA_desaturase  10 lllglfllgitgslaHeaaHgalfkkrklnrwlndllgal.lglplgi.sysawrisHlrHHaytngpdeDpdlaplalsrfeglfryllrlllgl 103
                    +++g    +it+++++ ++H+++       +w  +ll al  +  +   s+++w +sH+ HH+yt +p +Dp+        ++gl++ +++++l+ 
     CCD26731.1  78 VIAG---ITITAGYHRLWSHRSYV-----AKWPLRLLFALfGAANV-EgSIKWWAHSHRIHHRYTDTP-RDPY------DARKGLWYSHMGWMLLK 157
                    2222...4566799******9888.....55555555333133333.25*********99****7777.****......789999999******** PP

  FA_desaturase 104 lvlgwllalvlglwlrrlarrrapsksrrrkwrllawlllllawlglwlalllllglall..lwlvplllllfllalvl.nyveHyggdwgerqve 196
                     +++++   ++           ++  +r + ++++ +++++ ++l ++++  +++g  l   +++  ++++++  a++  n + Hy    g++++ 
     CCD26731.1 158 PNPKYRARADIS-------DLNDDWIVRFQHRHYIPLMIFMSYILPTLICGKFFNGDYLGgfVYAGIIRVFAIQQATFCiNSMAHYL---GDQPFD 243
                    ****65444444.......4444444444446777777777766666666666666666654555555555555554447*****97...999999 PP

  FA_desaturase 197 tsasirsaswllnlltgnlnyHieHHlfP.....gvpwyrLpe 234
                    + ++ r ++wl +l+t++ +yH+ HH fP     ++ wy+++ 
     CCD26731.1 244 DKRTPR-DNWLTALVTFGEGYHNFHHEFPtdyrnAIKWYQYDP 285
                    999999.9********************************986 PP

>> Cyt-b5  Cytochrome b5-like Heme/Steroid binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   8.5e-17   7.6e-13       9      71 ..     351     415 ..     344     418 .. 0.88

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 8.5e-17
                 E.CTTEEEEEETTEEEECTTTCCCSTTCSHHHHTTTTSBBHHHHHHTT..GGCHHHHHHHHGGEEE CS
      Cyt-b5   9 n.gkndlwvairgkVYDvskflskhpGgesailkyaGkDateafksvv..hsekdaekllkkylvG 71 
                 n ++n+ +v+i g ++Dv+++ ++hpGge++++++ GkD t+af+  v  hs++ a++ l+++++ 
  CCD26731.1 351 NsNNNRKLVIISGIIHDVTNYTKEHPGGEKLLNSAVGKDGTRAFQGGVyrHSNS-AHNVLADMRIA 415
                 42445999*****************************************88888.8*999999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      337  (0.0187964); expected 358.6 (0.02)
Passed Vit filter:                        33  (0.00184059); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3246.41
//
Query:       CCD26732.1  [L=566]
Description: hypothetical protein NDAI_0I01630 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-22   79.4   4.5    1.5e-05   25.3   0.1    5.3  5  CBS       CBS domain


Domain annotation for each model (and alignments):
>> CBS  CBS domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   2.2e-05      0.39       6      35 ..     149     178 ..     145     189 .. 0.89
   2 !   25.3   0.1   8.6e-10   1.5e-05       7      56 ..     242     289 ..     232     290 .. 0.83
   3 !   23.7   0.0   2.8e-09     5e-05       7      51 ..     324     368 ..     312     371 .. 0.91
   4 !    4.0   0.0    0.0038        68       8      36 ..     405     433 ..     401     440 .. 0.87
   5 !   12.2   0.1     1e-05      0.18      40      56 ..     517     533 ..     515     534 .. 0.90

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 2.2e-05
                 BSSCEEEETTSBHHHHHHHHHHHTSSEEEE CS
         CBS   6 trdvvtvppdttleealelmrekgvsrlPV 35 
                 t +++t++ + ++eea+++++++++++lPV
  CCD26732.1 149 TNKLITIDGSISVEEAFNTLIKHHLTSLPV 178
                 5689***************99***99***9 PP

  == domain 2  score: 25.3 bits;  conditional E-value: 8.6e-10
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHHHHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDllrall 56 
                  ++v ++  ++l+ ++ ++  +gv+r+ ++ e +k+vGi+++r l+++l 
  CCD26732.1 242 NQFVKLSKLDDLSTVISIL-GSGVHRIAIM-EGHKIVGILSQRRLIKYLW 289
                 477888999**********.999*******.6778*************97 PP

  == domain 3  score: 23.7 bits;  conditional E-value: 2.8e-09
                 SSCEEEETTSBHHHHHHHHHHHTSSEEEEEETTTBEEEEEEHHHH CS
         CBS   7 rdvvtvppdttleealelmrekgvsrlPVVdedgklvGivtlrDl 51 
                 +++++++ +++l +al +m ++++s++ V+d +++l+G ++ +D+
  CCD26732.1 324 SRIISINGNQPLIDALFKMHQERISSIAVIDTQNNLIGNISVTDV 368
                 5899***************7777*********************8 PP

  == domain 4  score: 4.0 bits;  conditional E-value: 0.0038
                 SCEEEETTSBHHHHHHHHHHHTSSEEEEE CS
         CBS   8 dvvtvppdttleealelmrekgvsrlPVV 36 
                 +++ v+p+++l+  l +++ ++ +rl +V
  CCD26732.1 405 PIFHVYPTSSLGRTLAKLVATKAHRLWIV 433
                 7889*************9988878**998 PP

  == domain 5  score: 12.2 bits;  conditional E-value: 1e-05
                 TBEEEEEEHHHHHHHHH CS
         CBS  40 gklvGivtlrDllrall 56 
                 gkl+G+v+l+D+l++l+
  CCD26732.1 517 GKLIGVVSLTDILNLLA 533
                 99***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1129  (0.0629706); expected 358.6 (0.02)
Passed bias filter:                      280  (0.0156172); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                        12  (0.000669307); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.28s 00:00:00.91 Elapsed: 00:00:00.45
# Mc/sec: 3753.06
//
Query:       CCD26733.1  [L=258]
Description: hypothetical protein NDAI_0I01640 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       650  (0.0362541); expected 358.6 (0.02)
Passed bias filter:                      435  (0.0242624); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2027.07
//
Query:       CCD26734.1  [L=176]
Description: hypothetical protein NDAI_0I01650 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    9.3e-49  164.7   0.1    1.1e-48  164.4   0.1    1.0  1  UQ_con           Ubiquitin-conjugating enzyme
  ------ inclusion threshold ------
      0.018   14.7   0.0      0.031   14.0   0.0    1.3  1  Prok-E2_B        Prokaryotic E2 family B
       0.11   12.6   0.1        1.4    9.1   0.1    2.0  1  Leuk-A4-hydro_C  Leukotriene A4 hydrolase, C-terminal


Domain annotation for each model (and alignments):
>> UQ_con  Ubiquitin-conjugating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.4   0.1   1.8e-52   1.1e-48       1     139 [.       8     144 ..       8     145 .. 0.98

  Alignments for each domain:
  == domain 1  score: 164.4 bits;  conditional E-value: 1.8e-52
                 HHHHHHHHHHHSTTTTEEEEEEETTEECEEEEEEEB.TTSTTTTEEEEEEEE--TTTTTS--EEEESST-SCTTBETTSBB-CGGGSTTT--TTSHHHH CS
      UQ_con   1 rlqkelkelakkkpsgisaklvddenlfewkvlikgpedtpYeggvFklelefpedYPlkpPkvkfvtkifHPnvdksGevcldiLkeekWspaltles 99 
                 rl++++k++++++p+g+sa++  d n++ w+++i+gp++tpYe+g+F+l lef+e+YP++ P+vkf +++fHPnv+++Ge+cldiL+ ++W+p++++ s
  CCD26734.1   8 RLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPAETPYEDGTFRLLLEFDEEYPINRPHVKFLSEMFHPNVYANGEICLDILQ-NRWTPTYDVAS 104
                 899********************8.**************************************************************.55********* PP

                 HHHHHHHHHHS--TTS-SSHHHHHHHHHTHHHHHHHHHHH CS
      UQ_con 100 vllsiqsLlaepnpesplnkeaakllkkdreeykkkvkey 139
                 +l+siqsL+++pnp sp+n+eaa+l+k+++++y k+vke+
  CCD26734.1 105 ILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKET 144
                 *************************************986 PP

>> Prok-E2_B  Prokaryotic E2 family B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   5.3e-06     0.031      34     118 ..      49     127 ..      37     145 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 5.3e-06
   Prok-E2_B  34 sggtvdlrlvypdsfpllppavflqdpeqlkllpHintfggaLClleeeldldewdpngsvadvleqlqqvLn.egisgdedaefa 118
                 + gt++l l +++++p  +p+v    +      p ++  +g++Cl       + w+p   va +l+++q + n  ++++  + e a
  CCD26734.1  49 EDGTFRLLLEFDEEYPINRPHVKFLSEM---FHPNVYA-NGEICL---DILQNRWTPTYDVASILTSIQSLFNdPNPASPANVEAA 127
                 6799******************888777...6899999.9*****...8999*********************9999998855554 PP

>> Leuk-A4-hydro_C  Leukotriene A4 hydrolase, C-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00023       1.4      18     111 ..      63     147 ..      52     148 .. 0.75

  Alignments for each domain:
  == domain 1  score: 9.1 bits;  conditional E-value: 0.00023
                      GGG-HHHHHHHHHHTIIIT---HHHHHHHHHHHHHTT-GGGHHHHHHHTTT---HHHHHHHHHHHHTT-..HHHHHHHHHHHGGGS-HHHHHHH CS
  Leuk-A4-hydro_C  18 kplpaekleaLdelYklseskNaeirlrwlqlalkakyeeavpevaeflgsqGrmkfvrplYraLnkvd..rdlAketFektkdfyhpiarklv 109
                       p++  +++ L+e+++ +   N ei l  l    ++++++++ +va++l+s      +  l+++ n  +  + +A   F+ +k++y + ++++v
       CCD26734.1  63 YPINRPHVKFLSEMFHPNVYANGEICLDIL----QNRWTPTY-DVASILTS------IQSLFNDPNPASpaNVEAATLFKDHKSQYIKRVKETV 145
                      577788888899999988888999888765....56777766.56777777......6677777777444667899999999999999999999 PP

                      HH CS
  Leuk-A4-hydro_C 110 ek 111
                      ek
       CCD26734.1 146 EK 147
                      98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       782  (0.0436165); expected 358.6 (0.02)
Passed bias filter:                      551  (0.0307323); expected 358.6 (0.02)
Passed Vit filter:                        63  (0.00351386); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.24s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 1364.15
//
Query:       CCD26735.1  [L=511]
Description: hypothetical protein NDAI_0I01660 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.9e-32  111.3   0.6    7.6e-32  110.4   0.6    1.4  1  BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehy
    0.00099   19.6   0.0      0.041   14.4   0.0    2.4  2  HATPase_c    Histidine kinase-, DNA gyrase B-, and HSP90-like


Domain annotation for each model (and alignments):
>> BCDHK_Adom3  Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.6   8.4e-36   7.6e-32       2     154 ..      88     243 ..      87     251 .. 0.88

  Alignments for each domain:
  == domain 1  score: 110.4 bits;  conditional E-value: 8.4e-36
  BCDHK_Adom3   2 vslrqlvqf...gekpst...gtllksaqflreelpirlAhrvkelenlPdglvenpsvkkvkdwYaqsfeellelpkp.eleenekftelLekikkr 92 
                  vsl ql q+    +   t   +++++s +f++eel ir+Ah++++l++lP+++v+n + ++v++ Y++ fe+++++p+  ++++n kf+e++++i+++
   CCD26735.1  88 VSLTQLAQYyddST---TltkHKIINSGRFVKEELAIRMAHKIHKLQKLPFNVVNNFHLAQVYESYYNIFERFRKYPRIkTIDDNYKFCEFIKRILQD 182
                  89*******54333...355688*******************************************************977***************96 PP

  BCDHK_Adom3  93 .HddvvttlaqGvlelk....ekrkrkqidseiqsFLdrfymsRIgiRmLieqhiaLteqskskkep 154
                    + ++++l +G le++             +ei+s L +++++RI++R+++e+h+++t +  s k++
   CCD26735.1 183 fNSLNLPHLVMGALECNvldlL------PREEIDSLLSSLLRARISRRLIVEEHLSITANYLSGKKE 243
                  15679************65540......5568**************************998775544 PP

>> HATPase_c  Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.021   1.9e+02       5      53 ..     301     358 ..     298     401 .. 0.68
   2 !   14.4   0.0   4.5e-06     0.041      74     108 ..     462     496 ..     450     498 .. 0.93

  Alignments for each domain:
  == domain 1  score: 2.6 bits;  conditional E-value: 0.021
                 HHHHHHHHHHHHHHHH.......HS..TTTEEEEEEEEEETEEEEEEEESSSSSTTHH CS
   HATPase_c   5 rLrqiisnlvdNavkf.......at..kageieveikaseddlvisveDnGiGipked 53 
                 +L+ i+ +++ N  ++       ++  k + i v+i ++ed + ++  D   Gi   d
  CCD26735.1 301 HLEYILGEILRNIYEAtikdyirKGidKPEPIVVTIVKTEDSFLFRFADKAGGILHHD 358
                 5666666666666665333366533445567777777666889999999888886655 PP

  == domain 2  score: 14.4 bits;  conditional E-value: 4.5e-06
                 SSHHHHHHHHHHHHTTTEEEEEEETTTEEEEEEEE CS
   HATPase_c  74 tGlGlsivkklvelmgGeiwvesepgrGttftftl 108
                  G+Gl+++k ++e ++G+++++s pg Gt+ t++l
  CCD26735.1 462 LGIGLAMCKTYAEYWNGDLTLNSIPGYGTDTTLKL 496
                 69****************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       546  (0.0304535); expected 358.6 (0.02)
Passed bias filter:                      398  (0.0221987); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.21s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 4132.14
//
Query:       CCD26736.1  [L=215]
Description: hypothetical protein NDAI_0I01670 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       431  (0.0240393); expected 358.6 (0.02)
Passed bias filter:                      328  (0.0182944); expected 358.6 (0.02)
Passed Vit filter:                        19  (0.00105974); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1713.04
//
Query:       CCD26737.1  [L=295]
Description: hypothetical protein NDAI_0I01680 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       395  (0.0220313); expected 358.6 (0.02)
Passed bias filter:                      316  (0.0176251); expected 358.6 (0.02)
Passed Vit filter:                        20  (0.00111551); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 2169.65
//
Query:       CCD26738.1  [L=665]
Description: hypothetical protein NDAI_0I01690 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   1.6e-131  439.9  26.0   1.8e-131  439.7  26.0    1.0  1  Kinetochor_Ybp2  Uncharacterised protein family, YAP/Alf4/glo
  ------ inclusion threshold ------
      0.099   12.6   0.5       0.27   11.2   0.5    1.7  1  DUF1151          Protein of unknown function (DUF1151)


Domain annotation for each model (and alignments):
>> Kinetochor_Ybp2  Uncharacterised protein family, YAP/Alf4/glomulin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.7  26.0    2e-135  1.8e-131       2     633 .]      12     659 ..       1     659 [. 0.93

  Alignments for each domain:
  == domain 1  score: 439.7 bits;  conditional E-value: 2e-135
                      HHHHHHHS-------THHHHHHHHHHHHHHT............SS-SHHHHCCCTSTHHHHHHTGGGGHHHHHHHHHTS--.......-SSSTH CS
  Kinetochor_Ybp2   2 eveeelktlveeappatDyltyltllelyleevn...ysieekeellpeLlelLqdnkeltkeIGWDLpklLlkflpksnv.......edklvk 85 
                      +++e+l  +++e  ++ D l+++t+++ y+e+vn    si++k e+l++Ll+lLq n+++++eI+WDLpk Ll f+   n+       ++++v 
       CCD26738.1  12 TICENLVRAFDE--QKDDPLSLVTIIDVYAEKVNtdtRSIKDKVEYLQTLLSLLQRNPDILYEISWDLPKALLDFFTLRNMqeqlplnKNQIVM 103
                      579999999***..******************************************************************9************* PP

                      HHHHHHHHHHHCS-HHHHHHHHHGGGTS--C............................CHHHHHHHH....HHHHHHHHHHHSSS-CHH..HH CS
  Kinetochor_Ybp2  86 lvmecledlArlGNPkEllLkvcElLselsveDedseeddesik..............kkensvpfelkfyvLlellssllkRiqtkyPsrFLa 165
                       vm+c++++A  GNPkE+l ++cElLs ls+e+++ ++++ s +                + ++++ lk+y+ +ell  +l Ri t+yPs+FL 
       CCD26738.1 104 NVMKCFSEIATTGNPKECLMTGCELLSDLSLEEQEIQTEQVSPApnkqegkedidvneLITPETILSLKLYAFIELLGGVLNRIETLYPSKFLV 197
                      *******************************88888888777779999999999998877788889**************************** PP

                      HHHHHHHHHHCCS-------S-SS-HHHHHHHHHHH............HHHHHS-S---HHHHH..HHHHHHHHHHHHHHHHHH.......... CS
  Kinetochor_Ybp2 166 talsailnavtnlpseetledlefvlrrvytfkrpylpprkps.sapdpeasseelskikedEsalqrklLqsfltqllksyllnpgvswavrl 258
                      ++ ++++++++  +  e+l++  f+lrrvy+f+ +y   +  + s+ +++ s+e l+k+++dE++lq+k+  +++t++l+++l+n++v++++r+
       CCD26738.1 198 MVSTSLMKFIREST--EKLNNPSFLLRRVYSFCHNYQFYSIDKtSEGAQDLSTEALKKLSKDETDLQKKIIGGLFTFALGNCLKNNAVEYEIRY 289
                      ************99..********************555444498999********************************************** PP

                      .....H-------------HHHHHHHHHHHHHHHSSS-CCC-----------------..................----TTTHHHHHHHHHHT CS
  Kinetochor_Ybp2 259 fpelqqsgrlseedafeedeelserdtilgrlvalatsfDidlsdellklikesrkiyesllkdveatedeavpllfeevpkdaeasytyslfk 352
                      f++l +++ +++  ++e +e          ++ +l+++  id++ e+ k+++esr+iy+ l+k +e+ ++  ++ l++ +   +++syty+l+k
       CCD26738.1 290 FKSLSNKEEGLNLHVVEFSE----------KYLELVKQYNIDFKPEFSKILEESRRIYRALPKSIEENDKTQQSALNQVI---YQLSYTYELKK 370
                      ****9999999999999988..........9********************************99666777789999999...*********** PP

                      T-TTCCS-S---HHHHHHHHHH...............HHHHHHT--.....SHHHHHHHHHHHHHHHCTS-TT-B-.......GGGGGSHHHHH CS
  Kinetochor_Ybp2 353 aaaekeiplsrsGiLlLltaryaensghllpkisfpDaielllrfvtpslesatfqnkgledvllyllwvalests.t....elkelpekvlka 441
                      aa+e  i+l + G L+L++  y   s+     ++++Dai+l+lr  t sl+ + ++nkg e + +++lwv++++++ t     lk++p+++l+ 
       CCD26738.1 371 AAEEISIELNSDGMLILSAMFY---SEEGISLLNIEDAIYLYLRYSTMSLYAELLHNKGAEAIIRFWLWVTITQEPiTsikdRLKNIPSYILTG 461
                      ***99***************99...66666678*******************************************65**************** PP

                      HHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHB-HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHCT----...................... CS
  Kinetochor_Ybp2 442 flqalllitarqpspelrkitltlltrlLhlspedvrfkfIrdtLencpyesvkaaaigilKdlmlkaskssqaselee............... 520
                      flq+lll+t+++ +  +  +++tlltrlL+l pe+++f+fI dtL +cpy  +k+a+++ilKdl++k+++  ++++  +               
       CCD26738.1 462 FLQMLLLKTCTERDSIVITSSFTLLTRLLCLTPEKIAFDFILDTLLSCPYVHAKSAVLEILKDLTTKTNQILDDNDD-Sdesglneklselvlk 554
                      *****************************************************************999665433322.2469************ PP

                      ............----TTTSHHHHHHHHHHS--TTT......TTS-TTTTHHHHHHHHHHHHHHHHHS-TTTSSCCCTHHHHHHHTHHHHHHHH CS
  Kinetochor_Ybp2 521 ..........asrtniflnperlsellslvlnaleellassenktllqenldlilaaLNllvvlkkkwdlevlqlkkelekfekeyleplktll 604
                                ++r++i +n++r+++++s++l ++ + la+s+  +    +l lil++++++v l+ +w+          +++++ + +++++++
       CCD26738.1 555 ddksnkapslPPRPYILINEDRMASIHSIALFTIRNVLATSKASK---IDLLLILNYMSFFVSLRYRWN----------NVLLQVIHDEIENKF 635
                      ************************************999888555...5699*****************..........*************** PP

                      HHHHHHHHHHHH---------HHHHHHHH CS
  Kinetochor_Ybp2 605 nsseaeleaekeeseeklekvalevLssa 633
                      n    ++ ++  ++e  ++k+a+++L ++
       CCD26738.1 636 N---TRIYED--NPEIGFIKIANDTLGEY 659
                      8...444444..5************9875 PP

>> DUF1151  Protein of unknown function (DUF1151)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.5     3e-05      0.27      38      86 ..     319     367 ..     308     382 .. 0.82

  Alignments for each domain:
  == domain 1  score: 11.2 bits;  conditional E-value: 3e-05
     DUF1151  38 vleeKpELqrvlekrkeeqvlkqkkeeeeakkkkseLeqelekraqrle 86 
                 +++ KpE  ++le+ ++  ++  k  ee+ k+++s+L+q++ +     e
  CCD26738.1 319 NIDFKPEFSKILEESRRIYRALPKSIEENDKTQQSALNQVIYQLSYTYE 367
                 5678************9888888888**************998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1062  (0.0592336); expected 358.6 (0.02)
Passed bias filter:                      575  (0.0320709); expected 358.6 (0.02)
Passed Vit filter:                        39  (0.00217525); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.26s 00:00:00.89 Elapsed: 00:00:00.41
# Mc/sec: 4833.16
//
Query:       CCD26739.1  [L=228]
Description: hypothetical protein NDAI_0I01700 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-27   93.0   1.1    1.5e-26   92.0   0.2    2.0  2  DASH_Duo1  DASH complex subunit Duo1


Domain annotation for each model (and alignments):
>> DASH_Duo1  DASH complex subunit Duo1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.14   2.5e+03      13      30 ..      16      33 ..       9      46 .. 0.63
   2 !   92.0   0.2   8.3e-31   1.5e-26       1      73 [.      55     128 ..      55     129 .. 0.98

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.14
   DASH_Duo1 13 nevienviesLkkaksni 30
                 +++++++++++++++ +
  CCD26739.1 16 PQIFDQMKSNFDATTTTM 33
                345666777777766555 PP

  == domain 2  score: 92.0 bits;  conditional E-value: 8.3e-31
   DASH_Duo1   1 aLekEleqLrkinevienviesLkkak.sniervketvestntLLdkWirIlsqtehtqrllldpeWkgasade 73 
                 +L+kEle+L+ki+ +ienv+++Lk+a+ ++++r+ e ++stnt+Ld+Wi+I+sq+++++rl++dp + ++s+d+
  CCD26739.1  55 SLLKELESLDKIIGMIENVDKTLKSASpQHLNRIYEVCKSTNTILDSWIDIQSQAGYITRLMNDPVYLKYSSDQ 128
                 69*********************************************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1136  (0.063361); expected 358.6 (0.02)
Passed bias filter:                      476  (0.0265492); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.22s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 1816.24
//
Query:       CCD26740.1  [L=1178]
Description: hypothetical protein NDAI_0I01710 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    4.5e-83  277.9   0.2    7.7e-83  277.2   0.2    1.4  1  CPSase_L_D2      Carbamoyl-phosphate synthase L chain, ATP bi
    4.9e-68  228.8   0.0      8e-68  228.1   0.0    1.4  1  PYC_OADA         Conserved carboxylase domain
    5.4e-38  129.9   0.0    1.1e-37  128.9   0.0    1.6  1  Biotin_carb_N    Biotin carboxylase, N-terminal domain
    1.3e-30  105.7   0.0    4.5e-30  103.9   0.0    2.0  2  Biotin_carb_C    Biotin carboxylase C-terminal domain
      3e-26   92.6   0.1    6.1e-26   91.5   0.1    1.5  1  HMGL-like        HMGL-like
    1.1e-18   66.8   2.4    1.1e-18   66.8   2.4    2.1  2  Biotin_lipoyl    Biotin-requiring enzyme
    1.3e-08   34.5   1.9     0.0042   16.9   0.2    2.7  2  Biotin_lipoyl_2  Biotin-lipoyl like
    5.2e-08   32.7   0.0    1.1e-07   31.6   0.0    1.4  1  ATP-grasp        ATP-grasp domain
    2.7e-06   27.1   0.0    5.6e-06   26.0   0.0    1.4  1  Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
    3.5e-05   23.9   0.0    9.1e-05   22.6   0.0    1.8  1  ATP-grasp_3      ATP-grasp domain
     0.0012   19.5   0.7        1.3    9.8   0.1    3.1  2  HlyD_3           HlyD family secretion protein
     0.0024   17.1   0.2       0.15   11.3   0.1    2.5  2  HlyD_D23         Barrel-sandwich domain of CusB or HlyD membr
     0.0048   16.2   0.0      0.012   14.9   0.0    1.6  1  ATPgrasp_ST      Sugar-transfer associated ATP-grasp
     0.0091   15.6   0.0      0.018   14.6   0.0    1.5  1  ATP-grasp_4      ATP-grasp domain
  ------ inclusion threshold ------
      0.017   14.7   0.0       0.12   12.0   0.0    2.1  1  RimK             RimK-like ATP-grasp domain
       0.06   13.3   3.0       0.45   10.5   0.9    3.1  3  RnfC_N           RnfC Barrel sandwich hybrid domain
       0.14   12.1   0.5       0.48   10.3   0.5    1.9  1  GCV_H            Glycine cleavage H-protein


Domain annotation for each model (and alignments):
>> CPSase_L_D2  Carbamoyl-phosphate synthase L chain, ATP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.2   0.2   7.3e-86   7.7e-83       1     210 [.     135     343 ..     135     344 .. 0.99

  Alignments for each domain:
  == domain 1  score: 277.2 bits;  conditional E-value: 7.3e-86
                  SHHHHHHHHHHTT-BBSSEECSSBSSHHHHHHHHHHH-SSEEEEETTCCTTTTEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSSEEEEEE CS
  CPSase_L_D2   1 DkesakealkkinvpvvpssaapvetleealaiakeigyPviikaafglGGkGmrvarneeelaelvkkalaeakaafgnkqvlvekslkgpkeiEve 98 
                  Dk+sa+++++++nvp+vp++++p+++++ea ++++++g+Pviikaafg+GG+Gmrv+r+ +++a+++++a++ea +afgn +++ve++l++pk+iEv+
   CCD26740.1 135 DKVSARHLAERANVPTVPGTPGPIKSAKEAEEFVAKYGFPVIIKAAFGGGGRGMRVVREGDDIADAFQRASSEAVTAFGNGTCFVERFLNKPKHIEVQ 232
                  9************************************************************************************************* PP

                  EEEETTS-EEEEEEEEECCECTCCCCEEEES-SS--HHHHHHHHHHHHHHHHHHT-EEEEEEEEEEETTTTEEEEEEEESS--CCHHHHHHHHS--HH CS
  CPSase_L_D2  99 vlrDakgnvitvcerenslqlrtqkvievAPsqtLtdeerqalreaavkvvrevgvvgagtveflldpkskeyyviEvNtRlsvesalaekaTGldlv 196
                  +l+D++gnvi+++er++s+q+r+qkv+evAP++tL ++ r+a+ ++avk+++e+g+++agt efl+d  ++++y+iE+N+R++ve++++e++TG+d+v
   CCD26740.1 233 LLADNYGNVIHLFERDCSVQRRHQKVVEVAPAKTLPRDIRNAILTDAVKLAKECGYKNAGTAEFLVDD-QNRHYFIEINPRIQVEHTITEEITGIDIV 329
                  *******************************************************************7.9**************************** PP

                  HHHHHHHTT--GCG CS
  CPSase_L_D2 197 keaakialgekLee 210
                  +++++ia+g++Le+
   CCD26740.1 330 AAQIQIAAGASLEQ 343
                  ************87 PP

>> PYC_OADA  Conserved carboxylase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.1   0.0   7.6e-71     8e-68       1     198 []     851    1052 ..     851    1052 .. 0.97

  Alignments for each domain:
  == domain 1  score: 228.1 bits;  conditional E-value: 7.6e-71
                  HHCCT--CCHHHHHHHHHHHTT-GGGHHHHHHHHHHHHHHTT----STTHHHHHHHHHHHHHHH........TS.TTSS--HHHHHHHTTSS---SS CS
    PYC_OADA    1 VykheiPGGqltnlkeqakeqglldkfeevlkeyaevnkllGdivkVTPsSkvvgdlAvfnvlnklteedvleegrykdipdsvvdllkGelGkppg 97  
                  Vy+heiPGGqltnl +qa+++gl++++ e +++y+e+n llGdivkVTP+SkvvgdlA+f+v+nklt +dv+  ++ +d+pdsv+d+++G +G+p+g
  CCD26740.1  851 VYQHEIPGGQLTNLLFQAQQLGLGEQWAETKRAYREANHLLGDIVKVTPTSKVVGDLAQFMVSNKLTSDDVKRLANSLDFPDSVMDFFEGLMGQPYG 947 
                  9************************************************************************************************ PP

                  ---HHHHHHHHT..-----S-GGGG---.-HHHHHHHTTTTSS...SHHHHHHHHHSHHHHHHHHHHHHHHHHHH..CTTTS......-SEEEEEET CS
    PYC_OADA   98 gfpeelvkkvlk.geepitsrpadslepedleklrkeleekak...teedvlsyalypkvaekflkfreeygdvsvlptkvffeglkvgeeveveve 190 
                  gfpe+l++ +l+ +++++tsrp+ +l+p dl+ +r++l+ +++   +e dv sy +ypkv+e+f k re+ygd+svlptk+f++  ++gee+e+ +e
  CCD26740.1  948 GFPEPLRSDILRnKRRKLTSRPGLELAPFDLNTIREDLQTRFGddiDECDVASYNMYPKVYEDFQKIRETYGDLSVLPTKNFLAPAEIGEEIEIVIE 1044
                  ************545559************************756678************************************************* PP

                  TEEEE.EE CS
    PYC_OADA  191 ggkylivk 198 
                  +gk+livk
  CCD26740.1 1045 QGKTLIVK 1052
                  *****986 PP

>> Biotin_carb_N  Biotin carboxylase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.0   1.1e-40   1.1e-37       3     110 .]      20     130 ..      18     130 .. 0.94

  Alignments for each domain:
  == domain 1  score: 128.9 bits;  conditional E-value: 1.1e-40
                    -EEEE---HHHHHHHHHHHHHTT-EEEEEEEGGGTTSHHHHHSSEEEEEESST...TCCGGG-HHHHHHHHHHTT-SEEE--SSTTTT-HHHHHHH CS
  Biotin_carb_N   3 kkvlianrGeiAvriiravrelgietvavyseedanslhvreadeavelgpas...asesYlniekivkaakesgadavhpGyGflsEnaefaeav 95 
                    +k+l+anrGei +ri+r+ +el+++tva+ys+ed+ s+h  +ade++ +g+ +   +  +Yl i++i+++ak++++d +hpGyGflsEn+efa++v
     CCD26740.1  20 NKILVANRGEIPIRIFRTSHELSMKTVAIYSHEDRLSTHRLKADESYVIGEPNqftPVGAYLAIDEIINIAKKHNVDFIHPGYGFLSENSEFADKV 115
                    79***********************************************9554233569************************************* PP

                    HHTT-EESSS-HHHH CS
  Biotin_carb_N  96 eeagivfiGPsaeal 110
                    +++gi+++GP+a+++
     CCD26740.1 116 AKNGIAWVGPPASVI 130
                    ***********9986 PP

>> Biotin_carb_C  Biotin carboxylase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.0   4.2e-33   4.5e-30       1     107 [.     359     466 ..     359     467 .. 0.97
   2 ?   -2.6   0.0       5.5   5.8e+03      14      61 ..    1106    1159 ..    1100    1174 .. 0.62

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 4.2e-33
                    EEEEESEETTTTTEE--CE-SEEE---STTEEEEE-.--TT-EE-TTS-SEEEEEEEEESSHHHHHHHHHHHHHT-EEESS-BSHHHHHHHHH-HH CS
  Biotin_carb_C   1 eaRinaEdpeknflpssGkvtelelpegpgvRvdsg.veegsevspyyDsllaKlivhgetreealarlrraLaelrieGvktnieflrailedee 95 
                    ++Ri++Edp+knf+p++G+++ +   +g+gvR+d g +++g+ +sp+yDs+l K  + g+t e + +++ raL e+ri+Gvktni+fl ++l ++ 
     CCD26740.1 359 QCRITTEDPAKNFQPDTGRIEVYGSAGGNGVRLDGGnAYAGAIISPHYDSMLVKCSCSGSTYEVVRRKMIRALIEFRIRGVKTNIPFLLTLLTHPV 454
                    79********************************97367********************************************************* PP

                    HHHT---TTTCC CS
  Biotin_carb_C  96 fakgeldtkfle 107
                    f++g++ t+f++
     CCD26740.1 455 FISGQYWTTFID 466
                    **********98 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 5.5
                     EE--CE-SEEE--......-STTEEEEE---TT-EE-TTS-SEEEEEEEEESSH CS
  Biotin_carb_C   14 lpssGkvtelelp......egpgvRvdsgveegsevspyyDsllaKlivhgetr 61  
                     +p +G + e+++       +g+ v v s+++ +  +s+  D  +  + v + + 
     CCD26740.1 1106 APMAGVIVEVRVHkgslvkKGEAVAVLSAMKMEMIISSPTDGQVKDVLVNDGEN 1159
                     677788888777755555556666666666666666666666666666655444 PP

>> HMGL-like  HMGL-like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.1   5.8e-29   6.1e-26       4     262 ..     559     828 ..     557     829 .. 0.84

  Alignments for each domain:
  == domain 1  score: 91.5 bits;  conditional E-value: 5.8e-29
                 EEE-TTTHHHHTS.SS---HHHHHHHHHHHHHH..T-SEE--........TSGGGT.THHHHHHHS---TT-B...........--EE-SSHHHHHHHH CS
   HMGL-like   4 ivdttLRDGeqal.kaalsveeklaiakaLdea..gvdeiEv........gfpaaseddfevvraiakavkka......r...ilalvrarekdikaav 82 
                 ++dtt RD++q+l ++++++ +  +ia   ++a  g  ++E+         ++++ ed+++++r++ k v++       r    +a+  + ++ i+ +v
  CCD26740.1 559 LMDTTWRDAHQSLlATRVRTYDLATIAPTTAHAlsGAFALECwggatfdvAMRFLHEDPWARLRTLRKLVPNIpfqmllRganGVAYSSLPDNAIDHFV 657
                 68**********9999******9999865554433777788888887777*******************9998666665255689999999******** PP

                 H....TT-SEEEEEEES-HHHHHHHHSSTHHHHHHHHHHHHHHHHHTT-ETTT-BTTTBS--HHHHHHHHHHHHHHT-SEEEEEETTS---HHHHHHHH CS
   HMGL-like  83 ealkgagakrvhvfiatselhlkaklkkdreevakkaeeavkaarslgkdvelsledasrtdleflaevveaaeeaGatriniaDtvGvltPneaaeli 181
                 +++k +g+++++vf+a ++   + k+++d+   +kka  +v+a   +  d+   l   ++ +l++ +ev+++++++G   + i+D+ G ++P +a+ li
  CCD26740.1 658 KQAKDNGVDIFRVFDALND-LDQLKVGVDA---VKKAGGVVEATLCYSGDM---LAKGKKYNLDYYLEVTDKIVQMGTHFLGIKDMAGTMKPAAAKLLI 749
                 *******************.3333333332...233333333332222222...3344678999*********************************** PP

                 HHHHHHS-.GGGEEEEEB-TTS-HHHHHHHHHHTT--EEEEBTTS--SSBBB-BHHHHHHHHHHTT-B----HHHHHHHHH CS
   HMGL-like 182 salkervkdkvilsvHcHndlGlAvantlaAveaGadrvdgtvnGlGeraGnaaleelvaalealgvdtgldlqklrsiaa 262
                   ++++++  ++++vH+H+  G+Av  + aA+  Gad+vd+++n++++ +  +++ +l a l + ++dtg+++q++r++ a
  CCD26740.1 750 GSIRAKYP-DLPIHVHTHDSAGTAVSSMAAAAVSGADVVDVAINSMSGLTSQPSINALLASLDG-EIDTGINVQHVRDLDA 828
                 ********.9*************************************************99987.69*******9998765 PP

>> Biotin_lipoyl  Biotin-requiring enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       3.6   3.8e+03      40      68 ..     681     709 ..     668     710 .. 0.73
   2 !   66.8   2.4     1e-21   1.1e-18       2      72 ..    1103    1168 ..    1102    1169 .. 0.97

  Alignments for each domain:
  == domain 1  score: -2.2 bits;  conditional E-value: 3.6
                    TEEEEEEBSSSEEEEEESSTTTEEE-TTC CS
  Biotin_lipoyl  40 KmemeieapkaGvvkeilvkeGdtvevgd 68 
                    K+ ++   ++ Gvv+  l+ +Gd++  g+
     CCD26740.1 681 KVGVDAVKKAGGVVEATLCYSGDMLAKGK 709
                    66666666778999999999999887775 PP

  == domain 2  score: 66.8 bits;  conditional E-value: 1e-21
                     EEEESSSEEEEEE.ECSESSSTTCEE-TTSEEEEEECTTEEEEEEBSSSEEEEEESSTTTEEE-TTCEEEE CS
  Biotin_lipoyl    2 eiksPmiGesveegvvevlvkvGdkVkagqvlaeveamKmemeieapkaGvvkeilvkeGdtvevgdllak 72  
                     +i +Pm+G++ve     v v++G+ Vk+g+ +a+++amKmem i++p +G+vk++lv++G++ve++dll+ 
     CCD26740.1 1103 QIGAPMAGVIVE-----VRVHKGSLVKKGEAVAVLSAMKMEMIISSPTDGQVKDVLVNDGENVEASDLLVL 1168
                     799*********.....***************************************************986 PP

>> Biotin_lipoyl_2  Biotin-lipoyl like
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2     4e-06    0.0042       4      34 ..    1103    1133 ..    1100    1139 .. 0.89
   2 !   16.4   0.1   5.8e-06    0.0061       5      35 ..    1141    1171 ..    1137    1174 .. 0.91

  Alignments for each domain:
  == domain 1  score: 16.9 bits;  conditional E-value: 4e-06
  Biotin_lipoyl_2    4 sIaapvsGrVaqlnVkdGqrVkaGdvLaelD 34  
                       +I ap +G++++++V+ G  Vk+G   a+l 
       CCD26740.1 1103 QIGAPMAGVIVEVRVHKGSLVKKGEAVAVLS 1133
                       899*********************9988875 PP

  == domain 2  score: 16.4 bits;  conditional E-value: 5.8e-06
  Biotin_lipoyl_2    5 IaapvsGrVaqlnVkdGqrVkaGdvLaelDs 35  
                       I++p++G+V+ ++V dG  V+a d+L+ l+ 
       CCD26740.1 1141 ISSPTDGQVKDVLVNDGENVEASDLLVLLEE 1171
                       9************************998876 PP

>> ATP-grasp  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.1e-10   1.1e-07      14     159 ..     158     312 ..     145     316 .. 0.89

  Alignments for each domain:
  == domain 1  score: 31.6 bits;  conditional E-value: 1.1e-10
                 ECCHHHHHHHHHHH-SCEEEEESSS-CTTTTEEEECTCCGHHCHHHHC........GTTCEEEEE----SEEEEEEEEEETTC-.EEE--EEEEEEETT CS
   ATP-grasp  14 veskeeleeaaeelglpvvvKarrlgydGkGqsvvrseedleqaleal........keekvivEefvpfekElsvlvvrsaeGe.tafypvvetvqedg 103
                 ++s++e+ee++++ g+pv++K +  g  G+G  vvr+ +d+ +a++ +        +++++ vE f +  k + v    +  G+ ++ ++    vq++ 
  CCD26740.1 158 IKSAKEAEEFVAKYGFPVIIK-AAFGGGGRGMRVVREGDDIADAFQRAsseavtafGNGTCFVERFLNKPKHIEVQLLADNYGNvIHLFERDCSVQRRH 255
                 78999****************.788889****************99999999***99************999999999999998567899999999999 PP

                 EEEEEEECEE-SCH.HHHHHHHHHHHHHHHHTSSEEEEEEEEEETTCTEEEEEEESS CS
   ATP-grasp 104 ilrlsvapaevsek.aqkkaeeiakkiveeLggvGvfavElFvledgellvnElapR 159
                   ++ vapa+   + + + + + a k+++e g+    + E+ v ++++ ++ E+ pR
  CCD26740.1 256 QKVVEVAPAKTLPRdIRNAILTDAVKLAKECGYKNAGTAEFLVDDQNRHYFIEINPR 312
                 9999999998766615666667788*********99999988887777999999999 PP

>> Dala_Dala_lig_C  D-ala D-ala ligase C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   5.3e-09   5.6e-06      26     174 ..     162     311 ..     150     312 .. 0.86

  Alignments for each domain:
  == domain 1  score: 26.0 bits;  conditional E-value: 5.3e-09
                      HHHHHHHHHC-SSEEEEESSSSTTTTEEEESSGGGHHHHHHHHHTT......-SCEEEEE--.ESEEEEEEEEETSSCEEEEEEEEE-SSSSS- CS
  Dala_Dala_lig_C  26 ellekveeelgypvfVKpareGSSvGvskveseeelkeaieeafky......dekvlvEeai.egreievavlgneklevsevgeivvkkgfyd 112
                      +  e+ +++ g+pv++K+a  G   G+  v+  +++++a+++a +       + + +vE+++ + + iev +l ++  +v ++ e+  +    +
       CCD26740.1 162 KEAEEFVAKYGFPVIIKAAFGGGGRGMRVVREGDDIADAFQRASSEavtafgNGTCFVERFLnKPKHIEVQLLADNYGNVIHLFERDCSV--QR 253
                      4578999*********************************99987522223356789*****999*********9999999998887664..34 PP

                      HHHHHC.TT-EEESS----HHHHHHHHHHHHHHHHHTT--SEEEEEEEEETTTEEEEEEEES CS
  Dala_Dala_lig_C 113 yeakysddkaqlevpaklekeveekiqelalkaykaldlrGlaRvDfflteegeivlnEvNt 174
                       ++k     +++    +l+++++++i + a+k  k  + +  +   f+++++++ ++ E+N+
       CCD26740.1 254 RHQKV----VEVAPAKTLPRDIRNAILTDAVKLAKECGYKNAGTAEFLVDDQNRHYFIEINP 311
                      55555....677777789*******************************************6 PP

>> ATP-grasp_3  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   8.7e-08   9.1e-05      11     159 ..     142     314 ..     133     316 .. 0.73

  Alignments for each domain:
  == domain 1  score: 22.6 bits;  conditional E-value: 8.7e-08
                  HTTT.S---..............-EESS--.SSSEEEEESS-------B--SS--TTE...................EEEE--.-SEEEEEEEEE.SS CS
  ATP-grasp_3  11 LkeagvkvP..........tkleaeeleee.ekklvvKprdGaggesvrvveekeeaeaaieeve............lvqefi.eGkplSvsllsdge 84 
                  L e+ ++vP          +  eaee+  +   ++++K + G+gg ++rvv+e+++   a++  +             v +f+ + k++ v+ll+d+ 
   CCD26740.1 142 LAER-ANVPtvpgtpgpikSAKEAEEFVAKyGFPVIIKAAFGGGGRGMRVVREGDDIADAFQRASseavtafgngtcFVERFLnKPKHIEVQLLADNY 238
                  4444.44554456666676455555555445789********************9988888877788999******988888835799*********9 PP

                  SEEEEEEEEEEEET.....TEEEEEEES----H...HHHHHHHHHHHHTTSTT--EEEEEEEEESS..SEEEEEEESS-- CS
  ATP-grasp_3  85 kvlvlavnrqliekaeke.fvyaGnvtpietel...keevvelaeevvekleglaGyvGvDlvlkd.eepyviEvNPRlt 159
                   +++  + r    +++++ +v   +v+p++t     ++ + + a ++ ++  g +     ++++ d +  y+iE+NPR++
   CCD26740.1 239 GNVIHLFERDCSVQRRHQkVV---EVAPAKTLPrdiRNAILTDAVKLAKEC-GYKNAGTAEFLVDDqNRHYFIEINPRIQ 314
                  999888888776443333144...555555444222677777777777777.77777778999999899*********98 PP

>> HlyD_3  HlyD family secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1    0.0012       1.3       2      32 ..    1104    1134 ..    1103    1142 .. 0.88
   2 !    7.1   0.1    0.0083       8.8       2      28 ..    1141    1167 ..    1140    1174 .. 0.88

  Alignments for each domain:
  == domain 1  score: 9.8 bits;  conditional E-value: 0.0012
      HlyD_3    2 lrApvdGvvvelnveegevvqagdelleiip 32  
                  + Ap +Gv+ve+ v +g+ v +g++++ +  
  CCD26740.1 1104 IGAPMAGVIVEVRVHKGSLVKKGEAVAVLSA 1134
                  669***********************98865 PP

  == domain 2  score: 7.1 bits;  conditional E-value: 0.0083
      HlyD_3    2 lrApvdGvvvelnveegevvqagdell 28  
                  + +p dG+v+++ v+ ge v+a d l+
  CCD26740.1 1141 ISSPTDGQVKDVLVNDGENVEASDLLV 1167
                  679*******************99875 PP

>> HlyD_D23  Barrel-sandwich domain of CusB or HlyD membrane-fusion
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00014      0.15     104     140 ..    1097    1133 ..    1042    1137 .. 0.74
   2 ?    3.6   0.0     0.031        33     107     137 ..    1137    1167 ..    1133    1174 .. 0.72

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 0.00014
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  104 kvqktvtvkapisGvVteknvreGqyvqpgdtlftia 140 
                  + ++ +++ ap++Gv++e +v +G+ v++g++++ ++
  CCD26740.1 1097 DGHNPFQIGAPMAGVIVEVRVHKGSLVKKGEAVAVLS 1133
                  3456678889999999999999999999998887665 PP

  == domain 2  score: 3.6 bits;  conditional E-value: 0.031
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
    HlyD_D23  107 ktvtvkapisGvVteknvreGqyvqpgdtlf 137 
                   ++ +++p++G V +  v++G+ v+++d l+
  CCD26740.1 1137 MEMIISSPTDGQVKDVLVNDGENVEASDLLV 1167
                  5667788888888888888888888877665 PP

>> ATPgrasp_ST  Sugar-transfer associated ATP-grasp
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.1e-05     0.012      16      87 ..     130     198 ..     125     217 .. 0.75

  Alignments for each domain:
  == domain 1  score: 14.9 bits;  conditional E-value: 1.1e-05
  ATPgrasp_ST  16 fplvddKlkfkelalraglkvpkllgvikeqaeiseleafvkeleegvviKpakgsgGkGilviteredqdy 87 
                  +  v dK+  ++la+ra +  p++ g+    ++++e+e+fv+++   v+iK+a g gG+G++v+ e +d   
   CCD26740.1 130 IDSVGDKVSARHLAERANV--PTVPGTPGPIKSAKEAEEFVAKYGFPVIIKAAFGGGGRGMRVVREGDDI-A 198
                  56799********888765..44446777778999999******555*****************774443.2 PP

>> ATP-grasp_4  ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.7e-05     0.018       2     152 ..     172     313 ..     171     321 .. 0.85

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.7e-05
  ATP-grasp_4   2 slPvviKPsvgffSlGVykinneeewkaavaaieeeleqakeeykeevveeesflvEeyieG.eEfavdayfdeeGepvilnilkkefaseedvsdrl 98 
                   +Pv+iK + g + +G++++++ ++  +a+++ ++e+         ++  +++  vE +++  + + v ++ d+ G+  ++++++++ + ++  ++++
   CCD26740.1 172 GFPVIIKAAFGGGGRGMRVVREGDDIADAFQRASSEA--------VTAFGNGTCFVERFLNKpKHIEVQLLADNYGN--VIHLFERDCSVQRRHQKVV 259
                  58*****************************999772........2345678899*****86267889999999886..678899************* PP

  ATP-grasp_4  99 yvtsak.vieetlealeellkevnallglknfpvHiElrvsedgkiipiEvnplr 152
                   v +ak + ++  +a+ +   ++++++g kn  + +E+ v+++++ + iE+np+ 
   CCD26740.1 260 EVAPAKtLPRDIRNAILTDAVKLAKECGYKNAGT-AEFLVDDQNRHYFIEINPRI 313
                  9999763778889999888888889*****9876.9*****************75 PP

>> RimK  RimK-like ATP-grasp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00011      0.12      24     182 ..     158     330 ..     135     336 .. 0.70

  Alignments for each domain:
  == domain 1  score: 12.0 bits;  conditional E-value: 0.00011
                 ESS-S-HHHHHHTT-.-SSEEEEE-TTTT--EEEEE-SHHHHHHHHHH.GGG--........EEEEE--SS-SEEEEEEEET.TEEEEEEEEE--SSS- CS
        RimK  24 ardeedaekliekiklrfPvvvKsvegsqGikvvlakkeqklkqvlea.lkeai........lvqeyieeaenediRvlvvd.devvaalrrvskeGdF 112
                 +++ ++ae+++ k+  +fPv++K  +g  G ++ + ++ +++ + ++    ea+        +v  ++++ +  ++ +l  + ++v+  ++r +     
  CCD26740.1 158 IKSAKEAEEFVAKY--GFPVIIKAAFGGGGRGMRVVREGDDIADAFQRaSSEAVtafgngtcFVERFLNKPKHIEVQLLADNyGNVIHLFERDCSV--Q 252
                 5678899******9..6***********99999999988887776654344444555666669999999998888888876535666666666443..2 PP

                 ---TTT....T-EEEE----HHHHHHHHHHHHHCT-SEEEEE..EEEETTEEEEEEEESS--SHH..HHHHHT--HHH CS
        RimK 113 Rsnlhr....GgvaeklqlseeekelAikaakamelvvaGvD..llrakrgllvlEvnsspglek..iektlgidiak 182
                 R   +      +++ + ++ +     A+k ak  +   aG    l++ ++  +++E+n   ++e+   e  +gidi +
  CCD26740.1 253 RRHQKVvevaPAKTLPRDIRNAILTDAVKLAKECGYKNAGTAefLVDDQNRHYFIEINPRIQVEHtiTEEITGIDIVA 330
                 222222000133444445555555668999999999999987778888888999999999888762247778888754 PP

>> RnfC_N  RnfC Barrel sandwich hybrid domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.7   1.7e+03      38      54 ..     123     139 ..     120     152 .. 0.83
   2 ?    0.1   0.0      0.75     8e+02      37      83 ..    1034    1082 ..    1023    1096 .. 0.80
   3 ?   10.5   0.9   0.00043      0.45      39      81 ..    1110    1153 ..    1084    1172 .. 0.79

  Alignments for each domain:
  == domain 1  score: -1.0 bits;  conditional E-value: 1.7
      RnfC_N  38 iGapakplvkvgdkVlk 54 
                 +G pa+++ +vgdkV  
  CCD26740.1 123 VGPPASVIDSVGDKVSA 139
                 799************75 PP

  == domain 2  score: 0.1 bits;  conditional E-value: 0.75
      RnfC_N   37 hiGapakplvkvgdk.VlkGqkiaeaeg.fvsapvhasvsGtVkaiekr 83  
                   iG++ ++++++g + + k q i++ ++ +   +v+    G+  +i + 
  CCD26740.1 1034 EIGEEIEIVIEQGKTlIVKLQAIGDLNKkTGIREVYFELNGEMRKIGTL 1082
                  59**********98736789***99877576788888888888888765 PP

  == domain 3  score: 10.5 bits;  conditional E-value: 0.00043
      RnfC_N   39 GapakplvkvgdkVlkGqkiaeaeg.fvsapvhasvsGtVkaie 81  
                  G   ++ v++g  V+kG+ +a  ++  + + + +++ G+Vk++ 
  CCD26740.1 1110 GVIVEVRVHKGSLVKKGEAVAVLSAmKMEMIISSPTDGQVKDVL 1153
                  556678899************9998567888999*******985 PP

>> GCV_H  Glycine cleavage H-protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.5   0.00045      0.48      26      74 ..    1105    1152 ..    1102    1163 .. 0.88

  Alignments for each domain:
  == domain 1  score: 10.3 bits;  conditional E-value: 0.00045
                  HHHHH-SEEEEE---TT-EE-TT-EEEEEEESS-EEEEE-SSSEEEEEE CS
       GCV_H   26 aqeelgdvvfvelpevgtkvkkgeslaavEsvKaasevyapvsGevvev 74  
                  ++ ++g +v v++  +g  vkkge++a++ + K+   + +p +G+v +v
  CCD26740.1 1105 GAPMAGVIVEVRVH-KGSLVKKGEAVAVLSAMKMEMIISSPTDGQVKDV 1152
                  66789999999996.79*****************************886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1178 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       505  (0.0281667); expected 358.6 (0.02)
Passed bias filter:                      470  (0.0262145); expected 358.6 (0.02)
Passed Vit filter:                        57  (0.00317921); expected 17.9 (0.001)
Passed Fwd filter:                        17  (0.000948185); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.77u 0.29s 00:00:01.06 Elapsed: 00:00:00.42
# Mc/sec: 8387.93
//
Query:       CCD26741.1  [L=189]
Description: hypothetical protein NDAI_0I01720 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
      0.011   15.2   0.0      0.015   14.8   0.0    1.2  1  Gemini_coat  Geminivirus coat protein/nuclear export factor B
      0.073   13.5   0.0       0.37   11.3   0.0    1.9  2  Crystall_4   Beta/Gamma crystallin


Domain annotation for each model (and alignments):
>> Gemini_coat  Geminivirus coat protein/nuclear export factor BR1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.8   0.0   1.7e-06     0.015     180     230 ..     131     180 ..     111     188 .. 0.83

  Alignments for each domain:
  == domain 1  score: 14.8 bits;  conditional E-value: 1.7e-06
  Gemini_coat 180 gkeqlsvrrFfkwlnvktewknsetGkygnikknALllyyawlsavnskas 230
                  ++++l  +rF+k+   k  +k  e+Gky ++ +n Ll y   + +++ ++s
   CCD26741.1 131 VRNILP-HRFTKNELLKKIKKLVENGKYNDVLENPLLFYKLLWGMHGETVS 180
                  455555.9*******************************988877776655 PP

>> Crystall_4  Beta/Gamma crystallin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0       0.2   1.8e+03      38      60 ..      51      73 ..      49      79 .. 0.69
   2 ?   11.3   0.0   4.2e-05      0.37      10      78 ..      88     157 ..      82     163 .. 0.80

  Alignments for each domain:
  == domain 1  score: -0.5 bits;  conditional E-value: 0.2
  Crystall_4 38 aegvavmLsDwdnlsynrlavfe 60
                +eg+a++Ls  d l    +  f+
  CCD26741.1 51 EEGMAIKLSASDFLLKLSVHDFK 73
                58999999999977555555544 PP

  == domain 2  score: 11.3 bits;  conditional E-value: 4.2e-05
  Crystall_4  10 dkyClkagerseysLPswiyahdvkveaaegvavmLsDwdnlsynrlavf..egtveneelkkvr..aanGet 78 
                 d yCl+++++++ +  ++i + ++    ++++ v +sD+     +r+ +   +++++ne lkk++   +nG++
  CCD26741.1  88 DLYCLDIDNSTHLNCIEFITGSNILLPKDTNAEVCVSDVA---KERVRNIlpHRFTKNELLKKIKklVENGKY 157
                 67************************************85...455554422678899999998833356665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       659  (0.0367561); expected 358.6 (0.02)
Passed bias filter:                      524  (0.0292264); expected 358.6 (0.02)
Passed Vit filter:                        44  (0.00245412); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.23s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 1511.16
//
Query:       CCD26742.1  [L=216]
Description: hypothetical protein NDAI_0I01730 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       466  (0.0259914); expected 358.6 (0.02)
Passed bias filter:                      334  (0.018629); expected 358.6 (0.02)
Passed Vit filter:                        28  (0.00156172); expected 17.9 (0.001)
Passed Fwd filter:                         0  (0); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 1592.94
//
Query:       CCD26743.1  [L=131]
Description: hypothetical protein NDAI_0I01740 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    9.3e-26   89.7   1.3    1.1e-25   89.4   1.3    1.2  1  Med31     SOH1


Domain annotation for each model (and alignments):
>> Med31  SOH1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.4   1.3   6.4e-30   1.1e-25       2      67 ..      24      91 ..      23     117 .. 0.89

  Alignments for each domain:
  == domain 1  score: 89.4 bits;  conditional E-value: 6.4e-30
                HHHHHHHHHHHHHCSHHHHHHT..TSSSSSSSTHHHHHHHGGGGGSTTCCCTT--CHHHHHHHHHHSS CS
       Med31  2 krFeleleFvqsLanpaYlshL..aqekyledeafiaYLkYLeywkepeYakfltyPqcLkaLellqe 67
                +rFe+eleFvqsLan+ Y+++L  +q+++l+d++f +YLkYLeyw ep+Y++ ++yP+cL +L+ll+ 
  CCD26743.1 24 TRFEVELEFVQSLANIPYVTYLltQQQQILKDPKFKNYLKYLEYWCEPPYSQCIVYPNCLFVLKLLNG 91
                7********************96556679************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       614  (0.0342462); expected 358.6 (0.02)
Passed bias filter:                      489  (0.0272742); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.24s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 1039.99
//
Query:       CCD26744.1  [L=381]
Description: hypothetical protein NDAI_0I01750 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.8e-70  237.3   9.2    2.4e-70  236.9   9.2    1.1  1  Scs3p     Inositol phospholipid synthesis and fat-storage-ind
    0.00068   19.8   0.8     0.0011   19.0   0.8    1.3  1  K-box     K-box region


Domain annotation for each model (and alignments):
>> Scs3p  Inositol phospholipid synthesis and fat-storage-inducing TM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.9   9.2   2.7e-74   2.4e-70       5     246 .]      40     380 ..      37     380 .. 0.91

  Alignments for each domain:
  == domain 1  score: 236.9 bits;  conditional E-value: 2.7e-74
       Scs3p   5 fankdnilNvlFVKrgWfWttlvvllllltepryeastsakstarkrrlkkallrylilTlwWilftqwffg.ppimdrifvltGgkCellfevfdees 102
                 +++kd+++N+lFVK+gWfWttlv +++++   ry+++        ++ l ka+++y++lT+wW+ ftq++f  pp+md+if++tGg C+  f+vf+ +s
  CCD26744.1  40 TVDKDGLINTLFVKKGWFWTTLVGWFCIY---RYNNRRP----DFQKILWKAFKHYCVLTCWWYAFTQSIFIyPPLMDLIFLMTGGLCN--FDVFNIAS 129
                 589**************************...5666554....46799*********************7777****************..9******* PP

       Scs3p 103 eeeeelsekvt................................................................................saaCkaag 121
                 + + el+ +++                                                                                sa+C+++g
  CCD26744.1 130 DGKIELNLEFQdnstrrmkslnkiykilkrtqrdatgddekelllhslnsigcalekscdkinstississnrklnefintqmnsirrintSAQCRMHG 228
                 *************************************************************************************************** PP

       Scs3p 122 gkWkgGhDiSGHvFLlvlssllLleelapvvakralaklkkekkkkarkvkeekrakllangavaeveeee.kk...lle................... 197
                 g+W++GhD+SGH+FLl+l++++L +el+ ++a ra++    ++kk ++ v  e+++kl++ng +++v++ + ++     +                   
  CCD26744.1 229 GYWTKGHDPSGHIFLLTLMVMFLSGELS-TFAPRAFK-VLFQRKKIFHLV--EYVTKLFDNGLLWDVAKMRdEErknW-Kvilhravvlqpiiclrdls 322
                 ****************************.77777665.455566666666..69**********99994442222341.14555677778899999999 PP

       Scs3p 198 .......kalllen..illlalvglwlwmllmTaiyFHtllEklsGLlvallvvllvY 246
                        k+++++n  i+l+al+++wlw++++T+++FHt++E+lsG+l+a+lv+l+vY
  CCD26744.1 323 rllfatvKFIIWDNpvIVLIALIMTWLWSFVITILAFHTVWEQLSGFLFAYLVALAVY 380
                 9**************99****************************************9 PP

>> K-box  K-box region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.8   1.3e-07    0.0011       9      63 ..     141     195 ..     136     224 .. 0.82

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 1.3e-07
       K-box   9 eelkqEvskLkkeieklqrsqRkllGedleslslkeLqqLEqqLekslkkiRsrK 63 
                 ++  + +++L+k ++ l+r+qR  +G+d ++l l+ L+++   Leks  ki s+ 
  CCD26744.1 141 DNSTRRMKSLNKIYKILKRTQRDATGDDEKELLLHSLNSIGCALEKSCDKINSTI 195
                 5678899********************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1081  (0.0602934); expected 358.6 (0.02)
Passed bias filter:                      523  (0.0291706); expected 358.6 (0.02)
Passed Vit filter:                        50  (0.00278878); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.24s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2959.08
//
Query:       CCD26745.1  [L=339]
Description: hypothetical protein NDAI_0I01760 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.8e-59  200.3   0.0    4.4e-59  200.1   0.0    1.0  1  Aldo_ket_red  Aldo/keto reductase family
  ------ inclusion threshold ------
        0.1   12.6   0.1       0.26   11.3   0.1    1.7  1  RHH_1         Ribbon-helix-helix protein, copG family


Domain annotation for each model (and alignments):
>> Aldo_ket_red  Aldo/keto reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.1   0.0     5e-63   4.4e-59       1     290 [.      18     330 ..      18     333 .. 0.93

  Alignments for each domain:
  == domain 1  score: 200.1 bits;  conditional E-value: 5e-63
                   .EEEE-SSS-ST......TS-HHHHHHHHHHHHHTT--EEE--TT-TTTHHHHHHHHHHHH-TTTGGG-EEEEEE....................-- CS
  Aldo_ket_red   1 elglGtwqlgsk.....eeiskeealellrraleaGinffDtAevYgkgqseellGealkksrkkreeviiatKv....................dl 72 
                   +l++G +++gs         +k+e+++ll+++++ G ++fDtA+ Y +gqse++lGe+l  ++ kre+v+i tK+                     +
    CCD26745.1  18 PLIIGCMTFGSTkwnswLMEDKQEVFRLLKYCYDQGLRTFDTADQYSNGQSERILGEFLRFYNIKRETVVIMTKIffevdetldvpqsiktandeIK 114
                   6899******999966555678888899***************************************************************999777 PP

                   SSSTTSSSS-HHHHHHHHHHHHHHHT-S-EEEEEE-S--TTS-.HHHHHHHHHHHHHTTSEEEEEEES--HHHHHHH....HHTTT--EEEEE-B-B CS
  Aldo_ket_red  73 rdaeiksglskeniresleeslkrLgtdyvDllllHrpdpslpsieevldaleelvkeGkiraiGvSnfsveqleka....kkkkkvkivavqveyn 165
                       +++gls+++i++ + +s+ rLgt y+D+l++Hr dp++p +ee+++al++++ +G +r+iG S+  + q  ++     k + +k+v  q +yn
    CCD26745.1 115 LAVVNQRGLSRKHIIAGVSNSCDRLGT-YIDVLQIHRYDPETP-MEETMRALNDVINSGEVRYIGASRMLATQFAEYqfiaGKNGWHKFVNWQSQYN 209
                   77789999******************6.***************.***********************999999999999999*************** PP

                   TT-HHHHTTHHHHHHHTT-EEEEBSTTGGGTTGTTT.SS---SSSCCC-------TS-HHHHHHHHHHHHHHHHTT--HHHHHHHHHTTSTT-SEEE CS
  Aldo_ket_red 166 llreleeegllelckkkgvpliaysplggGlltgky.qseedkedkeprkdlkrdertsknldaaeelselakehgvslaqlalryalsqpavgivi 261
                   ll +++e+++++++k ++++l +ysp ++G+lt+ +  s e++++++pr ++     +++ ++ +e++++la  ++vs+aq++l+++l   ++  +i
    CCD26745.1 210 LLYREDEREVIPFAKRHNIALTPYSPNAKGILTRPWgSSTERTGKGDPRLKM----LMKCDREIVERVRQLADRKNVSMAQISLSWIL--HKGCYPI 300
                   *********************************9661556677777777775....89******************************..9****** PP

                   E--SSHHHHHHHHGGG.G----HHHHHHHH CS
  Aldo_ket_red 262 pgasnieqlednldal.elklseeevaeld 290
                   +g+ +i ++++ + al el ls+e+++ l+
    CCD26745.1 301 IGVNSIPRVQEAVVALqELSLSSEDISFLE 330
                   *************999777******98776 PP

>> RHH_1  Ribbon-helix-helix protein, copG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.9e-05      0.26       5      28 ..     264     287 ..     264     287 .. 0.93

  Alignments for each domain:
  == domain 1  score: 11.3 bits;  conditional E-value: 2.9e-05
                 EEEHHHHHHHHHHHHHHTSSHHHH CS
       RHH_1   5 rldeellerLdelarrrgrSrSel 28 
                 ++d+e++er+++la+r ++S+ ++
  CCD26745.1 264 KCDREIVERVRQLADRKNVSMAQI 287
                 69******************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       588  (0.032796); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.29s 00:00:00.76 Elapsed: 00:00:00.44
# Mc/sec: 2336.23
//
Query:       CCD26746.1  [L=598]
Description: hypothetical protein NDAI_0I01770 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.9e-123  411.4   0.0   2.5e-123  411.0   0.0    1.1  1  MTHFR     Methylenetetrahydrofolate reductase


Domain annotation for each model (and alignments):
>> MTHFR  Methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  411.0   0.0  1.4e-127  2.5e-123       5     287 .]      11     296 ..       6     296 .. 0.98

  Alignments for each domain:
  == domain 1  score: 411.0 bits;  conditional E-value: 1.4e-127
                 HHT.SS-EEEEEE---SSHHHHHHHHHHHHHHGGGG.-SEEEE---CCCTTH.HHHHHHHHHHHHHH-S-EEEEEESTTS-HHHHHHHHHHHHHCT--E CS
       MTHFR   5 aleegkalisfEffpPkteegernLleridrleevk.plfvdvTwgaggsta.eltssiakviqqelgleailhlTctdaskeeldkalekakelGirn 101
                 +  + k+++sfE+f+Pkt++g++nL++r+dr+ e++ p+f+d+Tw+agg+++ +l++++++++q+ lgle+++hlTct+++ ee+d+al+ka+++G++n
  CCD26746.1  11 HKSSSKTTFSFEYFVPKTSQGVQNLYDRMDRMYEASlPQFIDITWNAGGGRLsQLSTDLISTAQSVLGLETCMHLTCTNMPIEEIDSALKKAYDSGCQN 109
                 445889*******************************************887699******************************************** PP

                 EEEE--S--TT-GGC---S----SHHHHHHHHHHHHCGGSEEEEEE-TT--TT-S-HHHHHHHHHHHHHCT--EEEEEE-S-HHHHHHHHHHHHHCT-S CS
       MTHFR 102 ilALrGDppkdedkweekeeefkyaldLvrlireeygdlfdigvaaYPevhpeaksleadlkylkeKvdaGAdfiitQlffdvdkflkfveqvreagid 200
                 ilALrGDpp +++kwe+ e++f+ya+dL+++ir +ygd+fdigva+YPe+hpe+k++e + kylkeK+daG++fiitQ+f+dvd+f+ ++++vr+ gid
  CCD26746.1 110 ILALRGDPPINSNKWEACEGGFNYAKDLIKYIRLKYGDYFDIGVAGYPEGHPEEKDIELNFKYLKEKIDAGGNFIITQMFYDVDNFIDWCDKVRAYGID 208
                 *************************************************************************************************** PP

                 S-EEEEE---SSHHHHHHHHHHHT----HHHHCCCTCHCT-HHHHHHHHHHHHHHHHHHHHHCT.--EEEEE-TT--HHHHHHHHHCT CS
       MTHFR 201 ipiipgimpiksykslkrlaklskvkiPqelldrleeikdddeavkkigielavemvkkllaeg.vkglHlytlnkekaileileqlg 287
                 +piipgimpi++y ++ r+a++ +++iPq +ld+l++ikddde+v+++g+el+v m++kl+++g vk+lH+yt+n+eka l+il++lg
  CCD26746.1 209 VPIIPGIMPITTYGAFLRRAQWGEINIPQDFLDKLDPIKDDDELVREMGTELIVGMCQKLIDSGhVKHLHIYTMNLEKAPLMILDKLG 296
                 *************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       366  (0.0204139); expected 358.6 (0.02)
Passed bias filter:                      338  (0.0188521); expected 358.6 (0.02)
Passed Vit filter:                        21  (0.00117129); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.23s 00:00:00.75 Elapsed: 00:00:00.40
# Mc/sec: 4507.70
//
Query:       CCD26747.1  [L=138]
Description: hypothetical protein NDAI_0I01780 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-48  163.2  10.3    3.5e-48  163.0  10.3    1.0  1  Cornichon  Cornichon protein


Domain annotation for each model (and alignments):
>> Cornichon  Cornichon protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.0  10.3   1.9e-52   3.5e-48       1     122 []       3     124 ..       3     124 .. 0.99

  Alignments for each domain:
  == domain 1  score: 163.0 bits;  conditional E-value: 1.9e-52
   Cornichon   1 allfilaliltaallflsvyfiialsDleadyinpidlcsklNplvlpelilhafltllfllsgewilfllnlpllayniyrvmskqglydpteifnql 99 
                 a+lfi+a+  ++++lf++v+f+i+++Dleadyinpi+lcsk+N+l+ pe++lh++l++lfll+g+w++fllnlpllayn++++++k++l+d+teif++l
  CCD26747.1   3 AWLFITAVAANCINLFAQVHFTILYADLEADYINPIELCSKINRLITPEALLHTVLSALFLLHGNWFVFLLNLPLLAYNVQKIYNKTQLLDATEIFRTL 101
                 69************************************************************************************************* PP

   Cornichon 100 kkhkkesmiklafylllffiyLY 122
                  khkkes++klaf+ll+ff+yLY
  CCD26747.1 102 GKHKKESFLKLAFHLLMFFYYLY 124
                 **********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       476  (0.0265492); expected 358.6 (0.02)
Passed bias filter:                      227  (0.0126611); expected 358.6 (0.02)
Passed Vit filter:                        16  (0.000892409); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.24s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1003.22
//
Query:       CCD26748.1  [L=447]
Description: hypothetical protein NDAI_0I01790 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-15   57.9   0.0      2e-15   57.0   0.0    1.5  1  Cellulase  Cellulase (glycosyl hydrolase family 5)


Domain annotation for each model (and alignments):
>> Cellulase  Cellulase (glycosyl hydrolase family 5)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   1.1e-19     2e-15       4     172 ..      96     269 ..      93     334 .. 0.76

  Alignments for each domain:
  == domain 1  score: 57.0 bits;  conditional E-value: 1.1e-19
                 TSEEEEGEEECETTSCGGSHHHHHHHHHHHT-SEEEEEEEC..TGGTTSSTTTGCTHHHHHHHHHHHHHHHHTT-EEEEEEESSTTTCSSSSTTTTHHH CS
   Cellulase   4 sgkpvnlkglstswgnpyttkalidevkdagfntvRlpvsw..gelvenapdykvdenslerveevvkyakenglyvildiHseegwltkadgnssedt 100
                  gk+v+ + l+++w++ y +++ ++++k++gfn+vR+p+++   el+++++ y v+ ++ +++++++++a++ gl+v +d+H   g  +++  ns   +
  CCD26748.1  96 LGKEVAQSRLEAHWHTFY-QEEDFANIKSQGFNLVRIPIGYwaFELIDDEDPY-VKGSQEQKLDQAIQWAEKYGLKVWVDLHGAVGS-QNGFDNSGLRD 191
                 58999999*******976.7777899*************955999**999999.99999************************8333.33334444444 PP

                 HHHHHHH.............HHHHHHHHHTTTTTTEEEESSSS--STTCTCCTCHHHTTHHHH.HHHHHHHHHHHHTTS.SEEEEEC CS
   Cellulase 101 aeeffkk.............lwtqiAerykkndevvifelmNEPhgnntgaewtseeadevka.yaeeaikaIRavgpn.rliiveg 172
                   +f+++             l +  Ae+y   ++v++ el NEP g          + d++k+ y + a++ +R++ ++ +++i+  
  CCD26748.1 192 NIAFLDDenlevtvkvlnylLEKYSAEEY--LKTVIGVELINEPLGPVL-------DMDKLKDsYLKPAYDYVRKHLQSdQILIIHD 269
                 55554444444444422222223445555..6789***********444.......3477765277999999999976657777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       416  (0.0232026); expected 358.6 (0.02)
Passed bias filter:                      359  (0.0200234); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:02.26
# Mc/sec: 600.55
//
Query:       CCD26749.1  [L=654]
Description: hypothetical protein NDAI_0I01800 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
   4.8e-135  451.2   0.0   1.1e-134  450.1   0.0    1.5  1  G_glu_transpept  Gamma-glutamyltranspeptidase


Domain annotation for each model (and alignments):
>> G_glu_transpept  Gamma-glutamyltranspeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  450.1   0.0    6e-139  1.1e-134       7     511 ..     105     647 ..      97     648 .. 0.91

  Alignments for each domain:
  == domain 1  score: 450.1 bits;  conditional E-value: 6e-139
                      T--HHHHHHHHHHHHHHHSTTT-STTSEEEEEEEETTSCEEEEE.............EE--BB-TT--TTTTTSCBCCHHHHSSGGG-BB--HH CS
  G_glu_transpept   7 GGnAvDAavAaalclgvvepqssGiGGGgfllvydaktkkveal.............daretAPaaatkdmfdkegdsklsktgalavgVPGev 87 
                        +A+DA ++++lc+g++++++sGiGGGg+++++++  ++  +              d+re+AP++a+k+mf+++ d+ +sk+g+ ++++PGe+
       CCD26749.1 105 NSTAIDASITQTLCIGMINFFNSGIGGGGYATIFNRHHNDPDTTdvkdkyehegitiDFREMAPMKAEKSMFKDKPDW-ASKIGGVSIAIPGEL 197
                      578******************************987655432211122222222233***************555555.69************* PP

                      HHHHHHHHHH-..SS-HHHHHHHHHHHHHH-EE--HHHHHHHHHCHHHHHTSHHHHHHHEE..TTSE--TTSEE--HHHHHHHHHHHH.HTTHH CS
  G_glu_transpept  88 agleeahkkyG..klpwadllepaiklareGfpvsealaralaeaeerlkkdpelaklFlp..egevlkagellkqpalAktLerlae.eGaea 176
                      +gl+e+++++G  +++w++llep ikl ++G++v+e la +l+ +e+ + + pe  ++ l+  +++vlk+g+++k+p+lA+tL+ la+ e ++ 
       CCD26749.1 198 MGLWELYDQFGsgSIKWSQLLEPIIKLGNQGWEVDEVLAMTLSMYEPIFLAMPEDWSFVLNstKNGVLKQGDIIKRPNLANTLNILAKnESVAP 291
                      ***********999**********************************7777766344444557777********************9778*** PP

                      HHSSH..HHHHHHHHHHHTT-S--HHHHHH---EEES-EEEEETT........CEEEEE-TTCSHHHHHHHHHHHHCTTTGGGCTTTCHHHHHH CS
  G_glu_transpept 177 FYkGe..lAeklvaelqkagGiltaeDLanykvevreplsadyrg........gytvyepppssggivllqiLnilegfdlkslssnsaetlhl 260
                      FY+ +  l +++v ++++  Gi + +D++ny+v++++pl  ++r+        + tv++ + ss+g++ll++L i+++fd+ + +  + +t+  
       CCD26749.1 292 FYDPNhpLVKSMVGKINQYDGIFQTNDFTNYNVNIEKPLMGKIRKgerhipenDLTVLTSSGSSSGAALLSALSIMDNFDTVEGGDYQDQTTFQ 385
                      ****555************************************77899***99999************************6666666799999* PP

                      HHHHHHHHHHHHHHH-SSTTTSS...SGHCHHHHHT-HHHHHHHHTT.BTTB..SG.....GGCSCGGCSCG.TTEEEEEEEEETTS-EEEEEE CS
  G_glu_transpept 261 lvEamklayadRsrylgDpdfvk...nptelveellskeyakeraklIkdkaatps.....seyykaaeaaeesggTthlsvvDregnaVSlts 346
                      l+E+mk++ ++R+r lgD ++     +++e ++ +l+ +++++  ++I +++          ++y++ ++ ++ +gT+h+s++D+++naVSlt+
       CCD26749.1 386 LIETMKWMASARTR-LGDFSSSVdspDIHENIQTILNSKWINNATESICKNSFPSPktmenFTMYNPLYQLNDPHGTAHFSIIDQNNNAVSLTT 478
                      **************.***9876545588999*****************99985444777778899***************************** PP

                      EESSTTTTSEBETTTTEBE--GGGGSBS..TS..TTSCSTTSTTB--TT----B----EEEEE.TTEEEEEEEEESGGGHHHHHHHHHHHHHTT CS
  G_glu_transpept 347 tinllFGsgvvvpgtGilLnnemddfst..gvenafgldpspanaiePgkRplssmaPtivlk.dgkpvlvlGaaGGsriisavlqvlvnvldl 437
                      tinllFGs ++ p tG+++nnemddfs+  g +n+f+l+ps +n++ePgkRplss aPti+l+  gkp +v+Ga+GGsri++++lq++++++++
       CCD26749.1 479 TINLLFGSLIHDPITGVIFNNEMDDFSQpnGPSNSFDLTPSIFNFPEPGKRPLSSAAPTIILNeLGKPDFVVGASGGSRITTSILQAIIRTYWY 572
                      *****************************999************************************************************** PP

                      -S-HHHHHHS--EEESSSSTEEEEST..TS.HHHHHHHHHTTSEEEESSSTCCCEEEEEEEETTTEEEEEE-TTTT CS
  G_glu_transpept 438 gldlqeavdaprihhqllpdkvevEe..gfseevveeLearGhkvkevedsssvvaavavakekgvleaasDprkd 511
                      +++l e+++ prihhqllpd++evE+   +++e+v++L+++G+++ e+ ++s ++a+   + ++ ++ a+sD +++
       CCD26749.1 573 KMPLLETIAYPRIHHQLLPDQLEVENitMIGKETVNNLKNMGYTIIESFPKSCINAIKKNT-KSLEWFAVSDFWRK 647
                      ***************************9******************************997.99********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       507  (0.0282782); expected 358.6 (0.02)
Passed bias filter:                      446  (0.0248759); expected 358.6 (0.02)
Passed Vit filter:                        31  (0.00172904); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.64u 0.23s 00:00:00.87 Elapsed: 00:00:00.43
# Mc/sec: 4525.20
//
Query:       CCD26750.1  [L=275]
Description: hypothetical protein NDAI_0I01810 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.5e-19   66.9   5.5    2.5e-18   65.5   5.5    1.8  1  zf-U1          U1 zinc finger
  ------ inclusion threshold ------
      0.044   14.2   1.4      0.044   14.2   1.4    1.8  2  K_channel_TID  Potassium channel Kv1.4 tandem inactivation do
      0.068   13.9   0.8        2.5    8.9   0.0    2.3  2  Clr2           Transcription-silencing protein Clr2


Domain annotation for each model (and alignments):
>> zf-U1  U1 zinc finger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   5.5   4.2e-22   2.5e-18       1      38 []       1      38 [.       1      38 [. 0.99

  Alignments for each domain:
  == domain 1  score: 65.5 bits;  conditional E-value: 4.2e-22
                XXSEEETTTTEEESS-SHHHHHHHHTSHHHHHHHHHHH CS
       zf-U1  1 mpkYyCdYCdiyLthDspsvRksHngGrkHkenvkdyy 38
                m +YyC+YC++yLthD++svRksH  G++H+++++dyy
  CCD26750.1  1 MARYYCEYCHSYLTHDTLSVRKSHLVGKNHIRITADYY 38
                88***********************************9 PP

>> K_channel_TID  Potassium channel Kv1.4 tandem inactivation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       1.8   1.1e+04      53      55 ..     168     170 ..     154     179 .. 0.47
   2 ?   14.2   1.4   7.3e-06     0.044      30      61 ..     234     268 ..     229     274 .. 0.73

  Alignments for each domain:
  == domain 1  score: -3.1 bits;  conditional E-value: 1.8
  K_channel_TID  53 GeG 55 
                     +G
     CCD26750.1 168 NTG 170
                    222 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 7.3e-06
  K_channel_TID  30 rer...lahsraaaaaavaaaaaaaeGeGGggGGs 61 
                    r r    +hsr +  aa a+++++ +G+GGggG  
     CCD26750.1 234 RKRimmHSHSRPSIPAANASTSGGHNGGGGGGGTI 268
                    44544567999999999998888888877777654 PP

>> Clr2  Transcription-silencing protein Clr2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.018   1.1e+02      61     118 ..      22      86 ..      11     111 .. 0.69
   2 ?    8.9   0.0   0.00041       2.5       5      48 ..     133     181 ..     130     246 .. 0.79

  Alignments for each domain:
  == domain 1  score: 3.6 bits;  conditional E-value: 0.018
        Clr2  61 eedleeketirlaGkvytlvrkraykp........pssnaappakpkpleavvieelpkgfkavel 118
                 +++l  k++ir++ + y+   +++y++         +++ +++++ ++ +++v +e +++ +  ++
  CCD26750.1  22 KSHLVGKNHIRITADYYRNKNVQQYTKcthrdrsrHNAKGKTQSHHRSKITKVSDE-LDELNRLKK 86 
                 5567778999*********9999999999887765555555555566667777777.555554444 PP

  == domain 2  score: 8.9 bits;  conditional E-value: 0.00041
        Clr2   5 vylGaEriwvgDtVRlkpsesd.....nnlasklelssdasndkadvlv 48 
                 v++ + r+ +gD VRl++ ++      + ++ + ++  + ++d+++v  
  CCD26750.1 133 VFIDSNRLDIGDSVRLNKLPQRanersSSTMANDNNTGGGNRDRNEVFI 181
                 788889999*********9999666655555566666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1121  (0.0625244); expected 358.6 (0.02)
Passed bias filter:                      423  (0.0235931); expected 358.6 (0.02)
Passed Vit filter:                        37  (0.0020637); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.45u 0.24s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2039.33
//
Query:       CCD26751.1  [L=132]
Description: hypothetical protein NDAI_0I01820 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
  ------ inclusion threshold ------
       0.04   13.9   3.7      0.032   14.2   2.3    1.6  2  Ninjurin     Ninjurin
       0.09   12.7   2.5      0.097   12.6   2.5    1.3  1  TMEM154      TMEM154 protein family
       0.11   13.0   0.5       0.11   13.0   0.5    2.2  2  ATP-synt_8   ATP synthase protein 8
       0.39   10.3   1.3       0.59    9.7   1.3    1.3  1  SLC3A2_N     Solute carrier family 3 member 2 N-terminus
        1.6    9.1   6.3       0.17   12.2   1.1    2.1  3  Sigma_reg_N  Sigma factor regulator N-terminal


Domain annotation for each model (and alignments):
>> Ninjurin  Ninjurin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.77   2.8e+03      96      96 ..      42      42 ..      12      64 .. 0.64
   2 ?   14.2   2.3   8.9e-06     0.032      38      84 ..      73     127 ..      54     131 .. 0.78

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.77
    Ninjurin 96 i 96
                i
  CCD26751.1 42 I 42
                2 PP

  == domain 2  score: 14.2 bits;  conditional E-value: 8.9e-06
    Ninjurin  38 kfyiallvLislSllLqvvvgillil........iasklnlekekkerrlnklnn 84 
                 ++ ++ll+L ++Sl++ +++g+l+i+          s+  l ++++e++l+++n+
  CCD26751.1  73 NVIVVLLILFIISLIILIIIGVLIIVlvnvffppPPSSSALANDDEEKQLQVTNE 127
                 556899******************9978888776234566777777777777775 PP

>> TMEM154  TMEM154 protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   2.5   2.7e-05     0.097      42      81 ..      61     101 ..       8     127 .. 0.67

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 2.7e-05
     TMEM154  42 eslssaelsnesdqlel.vlmiiiPlvllillllvviiliq 81 
                  ++ ++++++ ++   + +++ ii l++li++ +++i+l++
  CCD26751.1  61 IHKDNIDIDPIENVIVVlLILFIISLIILIIIGVLIIVLVN 101
                 23334444444444433244457777777777777777775 PP

>> ATP-synt_8  ATP synthase protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.85     3e+03      16      30 ..      37      51 ..      33      64 .. 0.59
   2 ?   13.0   0.5   3.1e-05      0.11      11      45 ..      80     116 ..      74     126 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.3 bits;  conditional E-value: 0.85
  ATP-synt_8 16 mwltLfiliqlklls 30
                ++ tL+  + l++++
  CCD26751.1 37 IITTLINTFNLNIFK 51
                445555555555554 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 3.1e-05
  ATP-synt_8  11 tiillmwltLfiliqlkllsft..yptnpkskslkli 45 
                 +++++++++L+i+  l +   +  +p++p+s+ l + 
  CCD26751.1  80 ILFIISLIILIIIGVLIIVLVNvfFPPPPSSSALAND 116
                 5566666666665555554444214666666655544 PP

>> SLC3A2_N  Solute carrier family 3 member 2 N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.3   0.00016      0.59      35      61 ..      76     102 ..      69     113 .. 0.83

  Alignments for each domain:
  == domain 1  score: 9.7 bits;  conditional E-value: 0.00016
    SLC3A2_N  35 wlllilfwlvwlgmLvgaiviivqapk 61 
                  +llilf ++ +++++ +++iiv  + 
  CCD26751.1  76 VVLLILFIISLIILIIIGVLIIVLVNV 102
                 689*******************98665 PP

>> Sigma_reg_N  Sigma factor regulator N-terminal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.1   4.1e+03      64      80 ..       4      20 ..       2      22 .. 0.81
   2 ?   -2.5   0.1       1.8   6.3e+03      30      37 ..      42      50 ..      34      63 .. 0.51
   3 ?   12.2   1.1   4.8e-05      0.17      13      38 ..      79     111 ..      71     129 .. 0.58

  Alignments for each domain:
  == domain 1  score: -1.8 bits;  conditional E-value: 1.1
  Sigma_reg_N 64 sgsvsqsgffggeieye 80
                 ++++s++g++ ++++ +
   CCD26751.1  4 DQTISSTGILEQQSTSN 20
                 57889999999999876 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 1.8
  Sigma_reg_N 30 l.vvtllyl 37
                 +  ++l+++
   CCD26751.1 42 InTFNLNIF 50
                 223444444 PP

  == domain 3  score: 12.2 bits;  conditional E-value: 4.8e-05
  Sigma_reg_N  13 lrivlislivlllifvilvvtllyl.......a 38 
                  l  ++isli+l++i v+++v+ + +       +
   CCD26751.1  79 LILFIISLIILIIIGVLIIVLVNVFfppppssS 111
                  455667777777777777444444346655442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1624  (0.0905795); expected 358.6 (0.02)
Passed bias filter:                      793  (0.04423); expected 358.6 (0.02)
Passed Vit filter:                       131  (0.0073066); expected 17.9 (0.001)
Passed Fwd filter:                         6  (0.000334653); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.26s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 987.05
//
Query:       CCD26752.1  [L=201]
Description: hypothetical protein NDAI_0I01830 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    0.00042   20.0   0.1       0.44   10.4   0.0    2.8  3  TPR_1     Tetratricopeptide repeat
     0.0015   18.5   0.0        3.1    8.1   0.0    2.8  3  TPR_2     Tetratricopeptide repeat
  ------ inclusion threshold ------
       0.01   16.0   0.1       0.54   10.6   0.0    2.6  2  TPR_8     Tetratricopeptide repeat
      0.019   15.5   0.3       0.11   13.0   0.0    2.1  2  TPR_19    Tetratricopeptide repeat


Domain annotation for each model (and alignments):
>> TPR_1  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0019       8.5       8      31 ..      72      95 ..      68      97 .. 0.87
   2 ?   -2.0   0.0      0.87   3.9e+03      15      25 ..     127     137 ..     124     137 .. 0.81
   3 !   10.4   0.0   9.9e-05      0.44      10      33 ..     156     179 ..     148     180 .. 0.94

  Alignments for each domain:
  == domain 1  score: 6.4 bits;  conditional E-value: 0.0019
                HHHHHHTT-HHHHHHHHHHHHHHS CS
       TPR_1  8 GnayfklgkydeAleyyekALeln 31
                G+  +k +k++eAl+  + A+e +
  CCD26752.1 72 GLKQMKSNKLQEALKSISLAIEMQ 95
                677899************999975 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.87
                 T-HHHHHHHHH CS
       TPR_1  15 gkydeAleyye 25 
                 gky +A+++ e
  CCD26752.1 127 GKYLDAVQDLE 137
                 99999999875 PP

  == domain 3  score: 10.4 bits;  conditional E-value: 9.9e-05
                 HHHHTT-HHHHHHHHHHHHHHSTT CS
       TPR_1  10 ayfklgkydeAleyyekALelnPn 33 
                 a++kl++  +A  y+e+ L+  Pn
  CCD26752.1 156 ALLKLNQVHQAKVYCERGLSFAPN 179
                 789*******************98 PP

>> TPR_2  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0012       5.2       4      30 ..      68      94 ..      65      97 .. 0.88
   2 ?   -2.4   0.0       1.7   7.5e+03      14      25 ..     126     137 ..     124     137 .. 0.78
   3 !    8.1   0.0    0.0007       3.1       9      33 ..     155     179 ..     147     180 .. 0.88

  Alignments for each domain:
  == domain 1  score: 7.4 bits;  conditional E-value: 0.0012
       TPR_2  4 lynlGlayyklgdyeeAleafekAlel 30
                l++ Gl  +k+++++eAl+    A+e 
  CCD26752.1 68 LFETGLKQMKSNKLQEALKSISLAIEM 94
                78889999***********99999986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 1.7
       TPR_2  14 lgdyeeAleafe 25 
                  g+y +A++++e
  CCD26752.1 126 TGKYLDAVQDLE 137
                 699999998775 PP

  == domain 3  score: 8.1 bits;  conditional E-value: 0.0007
       TPR_2   9 layyklgdyeeAleafekAleldPn 33 
                 +a++kl++  +A+ ++e+ l+ +Pn
  CCD26752.1 155 DALLKLNQVHQAKVYCERGLSFAPN 179
                 699********************98 PP

>> TPR_8  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.2     0.041   1.8e+02      12      32 ..      76      96 ..      73      98 .. 0.88
   2 ?   10.6   0.0   0.00012      0.54       9      33 ..     155     179 ..     147     180 .. 0.87

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.041
                HHTT-HHHHHHHHHHHHHHHH CS
       TPR_8 12 lklgdyeeAkeyyekaleldp 32
                +k ++++eA +++  a+e+++
  CCD26752.1 76 MKSNKLQEALKSISLAIEMQR 96
                578999***********9986 PP

  == domain 2  score: 10.6 bits;  conditional E-value: 0.00012
                 HHHHHTT-HHHHHHHHHHHHHHHHH CS
       TPR_8   9 siylklgdyeeAkeyyekaleldpd 33 
                 +++lkl++ ++Ak y+e+ l+ +p+
  CCD26752.1 155 DALLKLNQVHQAKVYCERGLSFAPN 179
                 7899******************998 PP

>> TPR_19  Tetratricopeptide repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.35   1.6e+03      35      53 ..      75      93 ..      74     100 .. 0.74
   2 ?   13.0   0.0   2.5e-05      0.11       5      60 ..     127     182 ..     124     187 .. 0.79

  Alignments for each domain:
  == domain 1  score: -0.3 bits;  conditional E-value: 0.35
      TPR_19 35 llalgqldeAealLdalpe 53
                +++++ l+eA + ++ + e
  CCD26752.1 75 QMKSNKLQEALKSISLAIE 93
                5788888898887776665 PP

  == domain 2  score: 13.0 bits;  conditional E-value: 2.5e-05
      TPR_19   5 gdyaeAlalleqalqedpknaearllLAeallalgqldeAealLdalpeedpddar 60 
                 g+y +A++ le +l      +e+ ++L +all+l+q+ +A+  +++ +  +p++  
  CCD26752.1 127 GKYLDAVQDLEFLLGTGMLAPEVFIRLTDALLKLNQVHQAKVYCERGLSFAPNETK 182
                 6666676667776666666799*********************9999988888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       954  (0.0532099); expected 358.6 (0.02)
Passed bias filter:                      552  (0.0307881); expected 358.6 (0.02)
Passed Vit filter:                        49  (0.002733); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.45u 0.25s 00:00:00.70 Elapsed: 00:00:00.42
# Mc/sec: 1447.40
//
Query:       CCD26753.1  [L=281]
Description: hypothetical protein NDAI_0I01840 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    1.4e-06   28.0   0.0    2.1e-06   27.3   0.0    1.3  1  adh_short        short chain dehydrogenase
    1.4e-06   27.9   0.0    2.1e-06   27.4   0.0    1.2  1  Epimerase        NAD dependent epimerase/dehydratase family
    5.3e-05   23.2   0.0    0.00019   21.4   0.0    1.9  2  KR               KR domain
    0.00049   19.6   0.0    0.00075   19.0   0.0    1.2  1  GDP_Man_Dehyd    GDP-mannose 4,6 dehydratase
     0.0045   16.0   0.0     0.0068   15.5   0.0    1.3  1  3Beta_HSD        3-beta hydroxysteroid dehydrogenase/isomeras
     0.0058   15.8   0.0     0.0094   15.1   0.0    1.3  1  RmlD_sub_bind    RmlD substrate binding domain
  ------ inclusion threshold ------
      0.034   13.3   0.0      0.058   12.5   0.0    1.3  1  Polysacc_synt_2  Polysaccharide biosynthesis protein
      0.051   13.1   0.0      0.072   12.6   0.0    1.3  1  NmrA             NmrA-like family
      0.069   13.0   0.0       0.57   10.0   0.0    2.2  2  NAD_binding_10   NAD(P)H-binding


Domain annotation for each model (and alignments):
>> adh_short  short chain dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.1e-09   2.1e-06       1     128 [.       2     140 ..       2     145 .. 0.86

  Alignments for each domain:
  == domain 1  score: 27.3 bits;  conditional E-value: 1.1e-09
                 SEEEEESTTSHHHHHHHHHHHHTT-EEEEEESCHHHHHHHHHHHHHT......TSEEEEEE-TTTSHHHHHHHHHHHHHHH.SSESEEEE---S...S- CS
   adh_short   1 kvvlvtGassGIGraiakelakeGakvvvvdrseekleevakelkee......gakalaiqvDvtdreevealvekavkkl.gkldvLvnNAGi...tg 89 
                 +++lv G+ + +G+ i++  +++G+kv+ ++rs ++ + + +e +++       +++  i++D+ d ++ + l+++ ++++  ++ vL  N       +
  CCD26753.1   2 QTILVFGGNGFLGKRICQSAINSGFKVLSLSRSGRPPASLNTEKHKNsttsqwVNEVNWIKADIFDPNSYKHLLNQNINHVvHSIGVLLENSNYkslMN 100
                 589********************************999998887777554333345999****************9999988**********9988777 PP

                 -SSGGGCSHHHHHHHHH.HHTHHHHHHHHHHHHHHHHCTT CS
   adh_short  90 sgpfselseeewervie.vNltgvflltravlpamlkqss 128
                 s ++s+ls+ + e+++e +N ++++ll+ ++ + +l++++
  CCD26753.1 101 SPSASSLSKVNNEQTYErINKQSALLLASTFHDSLLERKK 140
                 8888889999977776549**************9998776 PP

>> Epimerase  NAD dependent epimerase/dehydratase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.1e-09   2.1e-06       1      76 [.       4      88 ..       4     101 .. 0.89

  Alignments for each domain:
  == domain 1  score: 27.4 bits;  conditional E-value: 1.1e-09
                EEEETTTSHHHHHHHHHHHHCTSEEEEEES-STTTTCHHCHHC............EEEE--TT-HHHHHHHHHHHT-SEEEE--S--- CS
   Epimerase  1 ilVtGatGfiGsalvkallekgyevigldrlssasntarledl............elveldltdrsalerlfkeeqpdavihlAavgg 76
                ilV G++Gf+G+ +++   + g +v+ l+r  +  ++ + e+             +++++d+ d+++ + l+++ ++++v+h   +g 
  CCD26753.1  4 ILVFGGNGFLGKRICQSAINSGFKVLSLSRSGRPPASLNTEKHknsttsqwvnevNWIKADIFDPNSYKHLLNQ-NINHVVHS--IGV 88
                89*****************************888888877777899***************************7.8******8..444 PP

>> KR  KR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   9.8e-08   0.00019       2      93 ..       3      90 ..       2     122 .. 0.80
   2 ?   -1.1   0.0      0.79   1.6e+03     145     168 ..     121     144 ..     103     152 .. 0.77

  Alignments for each domain:
  == domain 1  score: 21.4 bits;  conditional E-value: 9.8e-08
                EEEEETTTSHHHHHHHHHHHHHHS-EEEEE-SS.....--HHHHHHHHHHHHTT-EEEE----TT-HHHHHHHHHHHHHHSS---EEEE------ CS
          KR  2 tylitGGlGgLGlelarwlaekgarhlvllsRsa...aadedskaliaelealgaevevvaaDvsdkdavealleeikaeeppikGvihaAgvlr 93
                t l+ GG G LG+ +++  +++g + l  lsRs+   a+ +++k++ ++ ++   ev++++aD+ d+++ ++ll++       i+ v+h+ gvl 
  CCD26753.1  3 TILVFGGNGFLGKRICQSAINSGFKVLS-LSRSGrppASLNTEKHKNSTTSQWVNEVNWIKADIFDPNSYKHLLNQN------INHVVHSIGVLL 90
                679********************87665.67776444555555566666677788*****************99874......788888877765 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.79
                 T-HHHHHHHHHHHHHHHHHHHHHH CS
          KR 145 gqanYaaaNaflDalaeyrrsqgl 168
                 +q++   a++f D+l e ++s+ +
  CCD26753.1 121 KQSALLLASTFHDSLLERKKSSSM 144
                 567777788888888887776554 PP

>> GDP_Man_Dehyd  GDP-mannose 4,6 dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.8e-07   0.00075       1      81 [.       5      84 ..       5      85 .. 0.81

  Alignments for each domain:
  == domain 1  score: 19.0 bits;  conditional E-value: 3.8e-07
                   EEETTTSHHHHHHHHHHHHCT-CCEEEEEEE...SS-TTHHHHHCTTT...TTGCCEEEEE--TT-HHHHHHHHHHHT-SEEEE CS
  GDP_Man_Dehyd  1 LiTGiaGfiGsylaelLlekgyevhgivrrs...ssfntgriehlakdpkeeleenlklhkgDltDssslerllaevqpdevyn 81
                   L+ G++Gf G  +++  ++ g++v  + r     +s+nt++ ++ ++   ++  ++++++k+D+ D +s ++ll++  ++ v++
     CCD26753.1  5 LVFGGNGFLGKRICQSAINSGFKVLSLSRSGrppASLNTEKHKNSTT---SQWVNEVNWIKADIFDPNSYKHLLNQN-INHVVH 84
                   89*************************99661125556666555554...455679******************986.787877 PP

>> 3Beta_HSD  3-beta hydroxysteroid dehydrogenase/isomerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.4e-06    0.0068       1      75 [.       5      87 ..       5     117 .. 0.69

  Alignments for each domain:
  == domain 1  score: 15.5 bits;  conditional E-value: 3.4e-06
   3Beta_HSD  1 vvtGgaGFlGralvkeLvrleelkevrvlD........lrespel.leelskvnvkkviegDvtdkdkleeale.gvdvvihlas 75
                +v Gg GFlG++++++ ++ +   +v +l         l++++++ + +++ vn  + i++D+ d ++ ++ l+ +++ v+h  +
  CCD26753.1  5 LVFGGNGFLGKRICQSAINSGF--KVLSLSrsgrppasLNTEKHKnSTTSQWVNEVNWIKADIFDPNSYKHLLNqNINHVVHSIG 87
                699***************9994..4555555667776533333330333344555569*******99999988614566666544 PP

>> RmlD_sub_bind  RmlD substrate binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.7e-06    0.0094       2      57 ..       3      84 ..       1      88 [. 0.89

  Alignments for each domain:
  == domain 1  score: 15.1 bits;  conditional E-value: 4.7e-06
                   EEEEESTTSHHHHHHHHHCTTTSEEEEEE-TT...........................T--TTSHHHHHHHHHHH--SEEEE CS
  RmlD_sub_bind  2 kilvtGanGqlGseLakqlaeeglevlaltre...........................eldltdaeavaellkeakpdvvvn 57
                   +ilv+G+nG lG+ + +++ ++g++vl+l+r+                           ++d+ d+++ ++ll+++  + vv+
     CCD26753.1  3 TILVFGGNGFLGKRICQSAINSGFKVLSLSRSgrppaslntekhknsttsqwvnevnwiKADIFDPNSYKHLLNQNINH-VVH 84
                   59****************************999****999999999999999999999999999999999999995554.444 PP

>> Polysacc_synt_2  Polysaccharide biosynthesis protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.9e-05     0.058       1      84 [.       4      85 ..       4      88 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.5 bits;  conditional E-value: 2.9e-05
                     EEEETTTSHHHHHHHHHHHHHB-SEEEEEES-HHHHHHHHHH......-TTEEEE....E--TT-HHHHHHHTT..T-SEEEE- CS
  Polysacc_synt_2  1 vlvtGagGsiGselvrqilkkkpkkiillerdElklyeiekeleeelkkkklkveivpvigdvrdkerlekaleelkvdvvfha 84
                     +lv G+ G +G+++++  +++  k +  l+r+     ++++e++++ ++++   e+  + +d+ d ++ +++l+  +++ v+h+
       CCD26753.1  4 ILVFGGNGFLGKRICQSAINSGFKVLS-LSRSGRPPASLNTEKHKNSTTSQWVNEVNWIKADIFDPNSYKHLLN-QNINHVVHS 85
                     89*****************99987655.678888888888887777777777777788889************9.889999996 PP

>> NmrA  NmrA-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.6e-05     0.072       1      61 [.       4      74 ..       4      93 .. 0.72

  Alignments for each domain:
  == domain 1  score: 12.6 bits;  conditional E-value: 3.6e-05
                EEESSTTSHHHHHHHHHHHHHT-EEEEEES-S..........-SHHHHHHHHSTTEEEES-TT-HHHHHHH CS
        NmrA  1 IlviGaTGrqGksvvrallkaghkvralvRdt..........kselakslkeaGvelvkgdlddkeslvea 61
                Ilv+G+ G +Gk + + ++++g+kv  l R            +++  +s   + v+ +k+d+ d +s +++
  CCD26753.1  4 ILVFGGNGFLGKRICQSAINSGFKVLSLSRSGrppaslntekHKNSTTSQWVNEVNWIKADIFDPNSYKHL 74
                9****************************998677666664322222222233444556665555555555 PP

>> NAD_binding_10  NAD(P)H-binding
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00029      0.57       1      59 [.       8      76 ..       8      94 .. 0.69
   2 ?   -0.2   0.0      0.41   8.2e+02     137     155 ..     203     222 ..     169     267 .. 0.63

  Alignments for each domain:
  == domain 1  score: 10.0 bits;  conditional E-value: 0.00029
                    TTTSHHHHHHHHHHHHC-T-EEEEEETT...HHHCHHHHCTT.........TCEEEE--TT-CCHHHHHHT CS
  NAD_binding_10  1 GAtGkvGrllvkellargghevtalvRn...peklaeleaee.........glevvegdvtdvedlaealk 59
                    G++G  G+++++ ++++ g++v  l R+   p++l+  e+++         +++ +++d+ d+++ ++ l+
      CCD26753.1  8 GGNGFLGKRICQSAINS-GFKVLSLSRSgrpPASLN-TEKHKnsttsqwvnEVNWIKADIFDPNSYKHLLN 76
                    9****************.5*******9876655554.2333311222222266777777777777777774 PP

  == domain 2  score: -0.2 bits;  conditional E-value: 0.41
                     EEEEEEE-CEE-ST.--SEE CS
  NAD_binding_10 137 dwTivrpggLtdep.ttkyr 155
                        i+rpg++ de  +t++r
      CCD26753.1 203 RPIIMRPGFMFDETlNTGTR 222
                     55677777777765544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       707  (0.0394333); expected 358.6 (0.02)
Passed bias filter:                      336  (0.0187406); expected 358.6 (0.02)
Passed Vit filter:                        34  (0.00189637); expected 17.9 (0.001)
Passed Fwd filter:                         9  (0.00050198); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 2084.93
//
Query:       CCD26754.1  [L=646]
Description: hypothetical protein NDAI_0I01850 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-46  157.9   2.4    2.3e-46  157.8   1.0    1.7  2  GTP_EFTU     Elongation factor Tu GTP binding domain
    4.5e-41  139.3   6.2      1e-40  138.2   6.2    1.6  1  LepA_C       GTP-binding protein LepA C-terminus
    8.2e-20   70.6   0.0    3.6e-19   68.6   0.0    2.1  2  EFG_C        Elongation factor G C-terminus
    2.8e-08   34.1   2.9    6.2e-08   32.9   1.3    2.4  2  GTP_EFTU_D2  Elongation factor Tu domain 2
      5e-06   26.6   0.7    1.2e-05   25.3   0.0    2.0  2  MMR_HSR1     50S ribosome-binding GTPase
    0.00093   18.7   0.1     0.0029   17.1   0.1    1.9  1  SRPRB        Signal recognition particle receptor beta subuni
     0.0031   17.2   0.2     0.0072   16.0   0.2    1.6  1  NAT          NAT, N-acetyltransferase, of N-acetylglutamate s
     0.0093   16.0   0.0      0.026   14.6   0.0    1.8  1  EFG_II       Elongation Factor G, domain II
     0.0097   15.7   0.1      0.033   14.0   0.0    1.9  2  RF3_C        Class II release factor RF3, C-terminal domain
  ------ inclusion threshold ------
       0.11   12.1   1.0       0.27   10.7   0.3    2.1  2  FeoB_N       Ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> GTP_EFTU  Elongation factor Tu GTP binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.8   1.0   1.3e-49   2.3e-46       2     194 .]      40     219 ..      39     219 .. 0.93
   2 ?   -3.4   0.0       3.2   5.7e+03     100     126 ..     563     589 ..     562     590 .. 0.86

  Alignments for each domain:
  == domain 1  score: 157.8 bits;  conditional E-value: 1.3e-49
                 CEEEEEEEESTTSSHHHHHHHHHHHTTSSCHHHHHHHHHSTHCHSHHHHHHTSCSSCEEEEEETTCSSEEEEEEEESSSGGGHHHHHHHHHT-SEEEEE CS
    GTP_EFTU   2 rirnigiighvDhGKtTLtdrLlyktgaiskkgekaeeervlDtlkeErergiTiksaaisleketkkylinliDtPGHvdFskevirglrvlDgavlv 100
                 ++r+++ii+h+DhGK+TL+dr l+ t+ is++ + +  +++lDtl+ ErergiTik++ ++l+   + y ++liDtPGHvdF +ev  ++r++Dg+v++
  CCD26754.1  40 KLRTFSIIAHIDHGKSTLSDRFLQLTNVISQDVSSTR-SQILDTLEVERERGITIKAQSCTLF--HDGYILQLIDTPGHVDFKSEVMSSMRACDGVVFL 135
                 6799***************************666554.789**********************..********************************** PP

                 EETTTBSTHHHHHHHHHHHHTTTEEEEEEESCGST.HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEBTTTTBTHHH.HHHHHHHHSHH CS
    GTP_EFTU 101 vdaveGvepqteevlrlalkegvpiivfiNKmDrl.kaelkeiveevkqklsrkeeklekygekgekevpvvfgSalkgegvkt.llealvellps 194
                 vda + v++q+    ++al ++++ii +iNK+D + + +lk + +++ +++       ++++ +      ++ +S+++g gv + l+ a+++++ps
  CCD26754.1 136 VDAIKKVQAQSVAFYKMALGMNLKIIPCINKVDLVdDYQLKLCMDDILKNF-------KEIKKD-----DIIKVSGKTGSGVMQdLIPAIITNIPS 219
                 ***********************************999*************.......333333.....59*********9865599999999985 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 3.2
                 EEETTTBSTHHHHHHHHHHHHTTTEEE CS
    GTP_EFTU 100 vvdaveGvepqteevlrlalkegvpii 126
                 vv  +e +++q  ev+ +a+ +g +ii
  CCD26754.1 563 VVKFKEYIKSQLYEVVIQARMNGNKII 589
                 788889999999******999998877 PP

>> LepA_C  GTP-binding protein LepA C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.2   6.2   5.6e-44     1e-40       1     106 [.     538     644 ..     538     645 .. 0.98

  Alignments for each domain:
  == domain 1  score: 138.2 bits;  conditional E-value: 5.6e-44
                 ESSCB-GGG-EEEETTTHHHHHHHHHHHHHHHS---SS-EEEEEEET.TEEEEEEEE----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
      LepA_C   1 ingekvdaLslivhrskaeergrklvekLkeliprqlfevaiqaaig.skviaretikalrkdvlaklyggditrkkKllekqkegkkrlkkignveip 98 
                 +ng+++daLs+i+hrs+++++g+++v k+ke+i++ql+ev+iqa+++ +k+iaretika rkdvlakl+++d++r+kKll+kqkegk+++k+ignv+i+
  CCD26754.1 538 VNGKSIDALSQIIHRSEVTRKGKEWVVKFKEYIKSQLYEVVIQARMNgNKIIARETIKAQRKDVLAKLHASDVSRRKKLLAKQKEGKQKMKSIGNVQIN 636
                 7*******************************************99747************************************************** PP

                 XXXXXXXX CS
      LepA_C  99 qeaflavl 106
                  ea+ a+l
  CCD26754.1 637 PEAYRAFL 644
                 *****998 PP

>> EFG_C  Elongation factor G C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       3.1   5.5e+03      18      41 ..      65      89 ..      63      99 .. 0.69
   2 !   68.6   0.0     2e-22   3.6e-19       3      75 ..     449     523 ..     447     533 .. 0.95

  Alignments for each domain:
  == domain 1  score: -2.5 bits;  conditional E-value: 3.1
                CCCHHHHHHHCT-EEEEEEEE..TT CS
       EFG_C 18 vgkvisdlssrrGeiedmeqd.asg 41
                +  + +d+ss r +i+d+ +   + 
  CCD26754.1 65 TNVISQDVSSTRSQILDTLEVeRER 89
                5678899999999999986663344 PP

  == domain 2  score: 68.6 bits;  conditional E-value: 2e-22
                 EEEEEEEEEEEECCCCCCHHHHHHHCT-EEEEEEEE..TTEEEEEEEEEGGG-T.THHHCHHHCTTTS-EEEEEE CS
       EFG_C   3 lEPivkveievpeeyvgkvisdlssrrGeiedmeqd.asgrviieaeiPlaeli.gfateLrslTkGegsfsmef 75 
                  EP+v+++i++p+ey+gkvi+++ + rGe++d+++d +++ v+i++++Pl++l+ +f+ +L+slTkG+g++++  
  CCD26754.1 449 QEPYVEATIKTPQEYLGKVITLCDNNRGEQIDVQYDnDGNDVVIKYNLPLSNLVdDFFGKLKSLTKGYGNLDYVD 523
                 7***********************************88*********************************9975 PP

>> GTP_EFTU_D2  Elongation factor Tu domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0         1   1.9e+03      13      31 ..     189     210 ..     188     226 .. 0.65
   2 !   32.9   1.3   3.4e-11   6.2e-08       1      73 [.     242     311 ..     242     312 .. 0.96

  Alignments for each domain:
  == domain 1  score: -0.7 bits;  conditional E-value: 1
                  EETTEEEEEECTCTTSEE.....E CS
  GTP_EFTU_D2  13 lkkGdevrilgndtskke.....i 31 
                  +kk+d +++ g  + +++     i
   CCD26754.1 189 IKKDDIIKVSG--KTGSGvmqdlI 210
                  89*******55..44444444554 PP

  == domain 2  score: 32.9 bits;  conditional E-value: 3.4e-11
                  EEEEEEEEEESEEETTEEEEEECTCTTSEEEEEEEEEEEEETEEESEEETTSEEEEEEEESSCCSGSSTTCEE CS
  GTP_EFTU_D2   1 GtvalgrvysGtlkkGdevrilgndtskkeivtrissletfhededeavaganaGvivaikgledaiivGdtl 73 
                  G++ l++v++G +k++d+v     +t+k+ ++ +i+ ++  +    ++  g+++++iv +k+  da +vGdt+
   CCD26754.1 242 GVILLIKVVDGNIKVNDKVIS--ASTGKSYEIKDIGIMFPTRVSIGQLQTGQVGYIIVSMKDSRDA-QVGDTF 311
                  78999****************..******999****9999999**********************8.*****7 PP

>> MMR_HSR1  50S ribosome-binding GTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   6.8e-09   1.2e-05       9     114 .]      51     166 ..      43     166 .. 0.64
   2 ?   -2.2   0.1       2.4   4.3e+03      67     101 ..     563     605 ..     549     621 .. 0.63

  Alignments for each domain:
  == domain 1  score: 25.3 bits;  conditional E-value: 6.8e-09
                 TSSHHHHHHHHHT.................STEEESSSTTSSSSEEEEEEEETTEEEEEEECGGCSSHHHHHHHHHHHHHHHHCTSEEEEEEETTTTCS CS
    MMR_HSR1   9 NvGKStLinaltg.................ekaivsdkpgtTrdinegrvklkgkeielvDtpGliegaseekglgkaflaleeadlillvvdaseekl 90 
                   GKStL  + ++                 ++ +v+++ g T++ +  ++ ++g  ++l+DtpG ++        ++ + +++ +d ++++vda  +k+
  CCD26754.1  51 DHGKSTLSDRFLQltnvisqdvsstrsqilDTLEVERERGITIKAQSCTLFHDGYILQLIDTPGHVD------FKSEVMSSMRACDGVVFLVDAI-KKV 142
                 67*******99974444444444444333234566666666666666665555677********666......234444445559********77.658 PP

                 HHHHHHHHHHHHHTTSEEEEEEES CS
    MMR_HSR1  91 kpldeeleelleeakkplilvlnk 114
                 +++   + ++    + ++i ++nk
  CCD26754.1 143 QAQSVAFYKMALGMNLKIIPCINK 166
                 777666666655566677777776 PP

  == domain 2  score: -2.2 bits;  conditional E-value: 2.4
                 HHHHHHHHCTSEEEEEEETT........TTCSHHHHHHHHHHH CS
    MMR_HSR1  67 gkaflaleeadlillvvdas........eeklkpldeeleell 101
                   +f++ ++++l  +v++a+        +e++k++++++ + l
  CCD26754.1 563 VVKFKEYIKSQLYEVVIQARmngnkiiaRETIKAQRKDVLAKL 605
                 5567777778888888887766555554344555555555444 PP

>> SRPRB  Signal recognition particle receptor beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.6e-06    0.0029      45      98 ..     101     150 ..      39     170 .. 0.71

  Alignments for each domain:
  == domain 1  score: 17.1 bits;  conditional E-value: 1.6e-06
                 ..GGTT-SEEEETT-GCCSHHHHHHHHHHGGEEEEEEEEETTS-HHHHHHHHHH CS
       SRPRB  45 sekgskltliDfPGheklrqklleklkaksslkglvfvvDStidpkevkevAEl 98 
                  ++g  l+liD PGh+ ++++++ +    +   g+vf+vD +i++ ++++vA +
  CCD26754.1 101 FHDGYILQLIDTPGHVDFKSEVMSS---MRACDGVVFLVD-AIKKVQAQSVAFY 150
                 3788999***************999...67789*******.5777777777744 PP

>> NAT  NAT, N-acetyltransferase, of N-acetylglutamate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2     4e-06    0.0072      32     102 ..     541     613 ..     511     620 .. 0.86

  Alignments for each domain:
  == domain 1  score: 16.0 bits;  conditional E-value: 4e-06
                 SXCCHHHHHHTTST...TTSSXHHHHHHHHHTSXEEEEEETTXSEEEEE.....EXSSSSXEEEEEEEXHHHHH CS
         NAT  32 idlekLksliedsf...krkldvkdYldrlkgkiakiyiaedyeglAivtwedpkeekevayLdkFavlkssqg 102
                 +++++L+++i++s+   k+k+ v ++ + +k++++++ i+  ++g  i+  e++k ++   +L k+ +++ s+ 
  CCD26754.1 541 KSIDALSQIIHRSEvtrKGKEWVVKFKEYIKSQLYEVVIQARMNGNKIIARETIKAQR-KDVLAKLHASDVSRR 613
                 589***********999999*********************************99888.677888887776655 PP

>> EFG_II  Elongation Factor G, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-05     0.026       2      68 ..     329     398 ..     328     402 .. 0.87

  Alignments for each domain:
  == domain 1  score: 14.6 bits;  conditional E-value: 1.4e-05
      EFG_II   2 PePvislaiepkskadedklskaLarlleEDptlrverdeeT...ketilsGmGelHleivverlkreyk 68 
                 P+P++++   p++  d + +++ +++l+  D ++++++++     + + l  +G+lH  + +erl++ey+
  CCD26754.1 329 PQPMVFVGAFPADGIDFKSMDDNIQKLVLNDRSVNLQKESSNalgQGWRLGFLGTLHASVFKERLEKEYN 398
                 99*******************************99986544222145678889***************97 PP

>> RF3_C  Class II release factor RF3, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.8e-05     0.033       9      75 ..     331     400 ..     321     430 .. 0.76
   2 ?   -2.6   0.1       2.5   4.5e+03      11      40 ..     601     634 ..     595     638 .. 0.65

  Alignments for each domain:
  == domain 1  score: 14.0 bits;  conditional E-value: 1.8e-05
                 -SEEEEEEESSGGGHHHHHHHHHHHHHCT.SSEEEEET.TS..S-EEEEESSTHHHHHHHHHHHHHH--- CS
       RF3_C   9 PElfarvrlkdplkrkqlrkgleqLaeEG.avqvfkeeeag..eelilgaVGqLQfeVveeRlknEYgve 75 
                 P +f     +d +  k+++  +++L      v++ ke+++   + + lg +G+L   V++eRl++EY+ +
  CCD26754.1 331 PMVFVGAFPADGIDFKSMDDNIQKLVLNDrSVNLQKESSNAlgQGWRLGFLGTLHASVFKERLEKEYNNS 400
                 667777778888899999999999875541555554443335367**********************965 PP

  == domain 2  score: -2.6 bits;  conditional E-value: 2.5
                 EEEEEEESSGGGHHHH....HHHHHHHHHCTSSE CS
       RF3_C  11 lfarvrlkdplkrkql....rkgleqLaeEGavq 40 
                 ++a+++++d+++rk+l    ++g ++++  G vq
  CCD26754.1 601 VLAKLHASDVSRRKKLlakqKEGKQKMKSIGNVQ 634
                 6778888888888887333234555555555555 PP

>> FeoB_N  Ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3   0.00015      0.27      32     149 ..      90     205 ..      81     213 .. 0.76
   2 ?   -3.2   0.0       2.9   5.2e+03      66      94 ..     586     613 ..     581     627 .. 0.64

  Alignments for each domain:
  == domain 1  score: 10.7 bits;  conditional E-value: 0.00015
                 TSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHCTSSSEEEEEEEGGG..HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HH CS
      FeoB_N  32 GvtvekkegklklkgkeveivDlPGiYslsayseeekvardflleeepdvvvnvvdatn..lernLyLtlqllelgvpvvlalnmideaekkgieidlk 128
                 G+t++ ++++l ++g+ ++++D PG  ++++      v  +    +  d vv +vda +    +++ +    l ++++++ ++n++d +++ ++++ ++
  CCD26754.1  90 GITIKAQSCTLFHDGYILQLIDTPGHVDFKSE-----VMSS---MRACDGVVFLVDAIKkvQAQSVAFYKMALGMNLKIIPCINKVDLVDDYQLKLCMD 180
                 99*********99************9888743.....3332...35689999999997621356788888899999**************999988666 PP

                 HHHHHH....TS-EEEEBTTTTBTH CS
      FeoB_N 129 kLsekL....gvpvvktsakkkegi 149
                  + +++    + +++k+s+k+++g+
  CCD26754.1 181 DILKNFkeikKDDIIKVSGKTGSGV 205
                 5544431111457888888888876 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 2.9
                 HHHHHHHHHHCTSSSEEEEEEEGGGHHHH CS
      FeoB_N  66 eekvardflleeepdvvvnvvdatnlern 94 
                 ++ +ar+++  ++ dv+ ++  +  + r 
  CCD26754.1 586 NKIIARETIKAQRKDVLAKLHAS-DVSRR 613
                 56789999998888887765444.44443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       837  (0.0466841); expected 358.6 (0.02)
Passed bias filter:                      529  (0.0295053); expected 358.6 (0.02)
Passed Vit filter:                        54  (0.00301188); expected 17.9 (0.001)
Passed Fwd filter:                        10  (0.000557756); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.62u 0.27s 00:00:00.89 Elapsed: 00:00:00.42
# Mc/sec: 4570.04
//
Query:       CCD26755.1  [L=506]
Description: hypothetical protein NDAI_0I01860 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-24   84.8   1.3    4.1e-19   68.8   0.3    2.2  2  Hus1      Hus1-like protein
  ------ inclusion threshold ------
      0.045   13.8   0.5      0.095   12.7   0.3    1.6  1  DUF4340   Domain of unknown function (DUF4340)


Domain annotation for each model (and alignments):
>> Hus1  Hus1-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   0.3   4.5e-23   4.1e-19       1     158 [.       1     244 [.       1     347 [. 0.76
   2 !   14.7   0.0   1.4e-06     0.012     213     279 ..     407     482 ..     388     501 .. 0.75

  Alignments for each domain:
  == domain 1  score: 68.8 bits;  conditional E-value: 4.5e-23
        Hus1   1 MkFkaqltd......aetlkkvlqslsklgkecilrltpeklrfiiite............addgvqvwaqlqvdaiFeeyeieSnde.neInlevdla 80 
                 Mk+k++++        ++l+++++++++l+k+ ilr+t+e+l +i+  +            ++d+ q+w+++++d +F +y+i+S++e ++I++e++ +
  CCD26755.1   1 MKLKLTINGsifpddYKLLQTTITTIASLRKTAILRFTNERLVIISTPKtfttnnnnnttlQADTGQLWCSIPKD-VFIQYTIDSMRElDTITMECNCD 98 
                 999999998888888***************************999876666667778888888999********9.9********************** PP

        Hus1  81 aLlraLksaea......aksvqlrLtkk............................grvplLaleisglss............................ 117
                 +Ll a k+ ++      ++++ ++L+                              ++ p+ al+i+  +                             
  CCD26755.1  99 TLLSAFKKYDRilsqgsSSDMLIKLQAVqdwnnnypnnnnnnnnngkldtknnkqiRQSPIHALSIKFDEFvhtrggsavmedeyqmdddnnnknahnh 197
                 ***********99999833555555555555555555555444444444447777888888888888888899************************** PP

        Hus1 118 ...reretvvth..diPvkvlseseveelkePelrdpdvsil.LPdl 158
                      ++++++h  +iPvk+l +s+ ++++eP+++   + i+ LP++
  CCD26755.1 198 yyfMGNSKKIQHsfKIPVKLLLRSQDHKIQEPLVNHDRIVIYkLPSI 244
                 ***99******999*******99999********9998887558875 PP

  == domain 2  score: 14.7 bits;  conditional E-value: 1.4e-06
        Hus1 213 q.....leqlesereaeeeeedaedeaeeakvrvdlkklarvlsvgelkpkkvvacivhetalvlyvlldd.....e 279
                 q     ++ ++ e+ +e  e+ ++++++  +v+ + ++++ + +   +  + v + i+h++ lv+++ ld      +
  CCD26755.1 407 QsgngrIRDNNLENVSELVERAEQESSSLHEVMLRSRDWKVCGKLYAAF-EDVALAIAHDHSLVFHCSLDRgtsedS 482
                 1555556666667777888899999***************999977776.9******************87765440 PP

>> DUF4340  Domain of unknown function (DUF4340)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.3   1.1e-05     0.095      89     161 ..      16     105 ..       8     118 .. 0.85

  Alignments for each domain:
  == domain 1  score: 12.7 bits;  conditional E-value: 1.1e-05
     DUF4340  89 salaeslkkklsdwrdkdllqldsedvtkiel....vskegrtlelekkedget.........tsakpegeeldt....aklntllsals 161
                 + l ++  ++++++r++++l +++e+++ i++    +++++++++l++++ + +         + ++++ +eldt     + +tllsa++
  CCD26755.1  16 YKLLQTTITTIASLRKTAILRFTNERLVIISTpktfTTNNNNNTTLQADTGQLWcsipkdvfiQYTIDSMRELDTitmeCNCDTLLSAFK 105
                 5566777799*********************66667***************************9999*******9665545577777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       885  (0.0493614); expected 358.6 (0.02)
Passed bias filter:                      397  (0.0221429); expected 358.6 (0.02)
Passed Vit filter:                        27  (0.00150594); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.41
# Mc/sec: 3664.36
//
Query:       CCD26756.1  [L=63]
Description: hypothetical protein NDAI_0I01870 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    8.3e-30  102.8   5.6    9.1e-30  102.6   5.6    1.0  1  Ribosomal_S30  Ribosomal protein S30


Domain annotation for each model (and alignments):
>> Ribosomal_S30  Ribosomal protein S30
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   5.6   5.1e-34   9.1e-30       1      58 []       3      61 ..       3      61 .. 0.97

  Alignments for each domain:
  == domain 1  score: 102.6 bits;  conditional E-value: 5.1e-34
                   XTBX-STTTTHHHHHS-------------THHHHHHHHHHHTTS.SS--SSSSS-S--- CS
  Ribosomal_S30  1 kvhGsLarAGKVrnqTPKveKqekkKkptGRakkRlqYnrRfvn.vvvggkkkkgpnsq 58
                   kvhGsLarAGKV++qTPKveK ek+K+p+GRa+kRl+Y+rRfvn ++++gk+k++p+++
     CCD26756.1  3 KVHGSLARAGKVKSQTPKVEKTEKPKQPKGRAYKRLLYTRRFVNvTLTNGKRKMNPSPN 61
                   9*******************************************99999*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       433  (0.0241508); expected 358.6 (0.02)
Passed bias filter:                      262  (0.0146132); expected 358.6 (0.02)
Passed Vit filter:                        11  (0.000613531); expected 17.9 (0.001)
Passed Fwd filter:                         1  (5.57756e-05); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.25s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 464.60
//
Query:       CCD26757.1  [L=362]
Description: hypothetical protein NDAI_0I01880 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.4e-40  139.6   7.7    1.9e-40  139.1   7.7    1.1  1  GCIP            Grap2 and cyclin-D-interacting
  ------ inclusion threshold ------
      0.031   14.7   1.9      0.066   13.6   1.9    1.5  1  CENP-B_dimeris  Centromere protein B dimerisation domain


Domain annotation for each model (and alignments):
>> GCIP  Grap2 and cyclin-D-interacting
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.1   7.7   2.1e-44   1.9e-40       1     260 [.      51     335 ..      51     336 .. 0.90

  Alignments for each domain:
  == domain 1  score: 139.1 bits;  conditional E-value: 2.1e-44
                 HHHHHHHHHHHHHHHHHHHTT......SSS---HHHHHHHHHHHHHHHHHHHHHHTTS-GGG-HHHHHHHHHHHHHHHHHHHHHHHHHH--........ CS
        GCIP   1 elqklaklvskeaTklsllls......kpelPsveelqellesifkalsgllliyhglpkgaGatLrkevrsavkevvdsvaqLleeivsse....... 86 
                 el kl+k++++++Tk++++++      ++ ++ ++e ++l+esif++ls l l y  + +++++ + k++++  +++++ +  L++e   ++       
  CCD26757.1  51 ELSKLSKIIKAQSTKIGIIVQpekiieSNLTAIYKEYKNLVESIFYLLSLLPLFYNDKHDTYAKFFLKKLDEPLLSLINALTLLVDETEINLkkeqnsn 149
                 689***********************9889999******************99999********************************99988876555 PP

                 --------------HHHHHHHTTTTS-S.SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH....S-------------..-----TTS--HHHHHHHHHH CS
        GCIP  87 psqskeeetlistGvVWeaCdalkklpk.dNktAilraieevlglvkDaleEmkelleeedeeedededdldddede..ergnqdrklseeekevikav 182
                   +  ++++lis+G++W++Cd l++l+k +N++++++ i+++++lv+D+l++++e+ e+  e  + d ++ldd+ d+  e++ +  k ++e  ++++ +
  CCD26757.1 150 DTEVVDKNRLISIGMIWSVCDTLDDLSKkGNFGLLGDYIKSSSNLVDDVLNDIDEWFEA-PELGNDDAFFLDDESDSeeEQEVKGDKDDKEKEDALERM 247
                 55556899***************************************************.467777888899988886666667777777777888888 PP

                 HHHH.......HHHHHHHHHHHHHHHHH--TT...-HHHHHHHHHHHHHHHHHHHHHHHHHS.SS--HHH..HHHHHHHHHHHHHHHH CS
        GCIP 183 lkll.......katvallkklsrsiteegkkdskeqvaqldklldlskeiseqvDdLaaslY.Ppqnisa..vkaqvekLasvlkkvl 260
                 + +l       k++++ll+++++si+  + k+++++   ldk  +l+ e+++++Dd++++++ ++ +++a  +  +++ L+s l k+ 
  CCD26757.1 248 KVFLkewqtnlKMIKLLLTSFNKSISMDTHKSKENNAGMLDKFQELHLELGKKIDDFISDIFmSDSSFQAenFDDTIQLLNSDLTKMV 335
                 88889999999***************6666666666666************************999999999**********999995 PP

>> CENP-B_dimeris  Centromere protein B dimerisation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   1.9   7.4e-06     0.066      11      66 ..     214     271 ..     205     282 .. 0.64

  Alignments for each domain:
  == domain 1  score: 13.6 bits;  conditional E-value: 7.4e-06
  CENP-B_dimeris  11 dsesesdeeeeeeeedeededeedd..edddevpvpsfgeamayfamvkryltsfpid 66 
                     d     d+e + eee+e   d++d   ed  e     + e  + + m+k  ltsf   
      CCD26757.1 214 DDAFFLDDESDSEEEQEVKGDKDDKekEDALERMKVFLKEWQTNLKMIKLLLTSFNKS 271
                     44444455655555555544444440055555555667899999**********9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1251  (0.0697752); expected 358.6 (0.02)
Passed bias filter:                      407  (0.0227007); expected 358.6 (0.02)
Passed Vit filter:                        30  (0.00167327); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.25s 00:00:00.74 Elapsed: 00:00:00.42
# Mc/sec: 2603.47
//
Query:       CCD26758.1  [L=694]
Description: hypothetical protein NDAI_0I01890 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-27   97.6   0.2    3.4e-27   96.0   0.2    1.7  1  Glyco_hydro_18  Glycosyl hydrolases family 18
     0.0073   16.3   2.9     0.0073   16.3   2.9    3.3  3  CBM_19          Carbohydrate binding domain (family 19)
  ------ inclusion threshold ------
      0.084   12.8   0.0       0.42   10.6   0.0    2.1  2  ydhR            Putative mono-oxygenase ydhR


Domain annotation for each model (and alignments):
>> Glyco_hydro_18  Glycosyl hydrolases family 18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.2   5.7e-31   3.4e-27       2     235 ..      29     258 ..      28     290 .. 0.78

  Alignments for each domain:
  == domain 1  score: 96.0 bits;  conditional E-value: 5.7e-31
                     EEEEEEGGGGGSS.G...CSHTTTESEEEEEEEEEEETTTEEEESS.TTHH......HHHHHHHHHH.HHTSTT-EEEEEEEETTTTTHHHHHHT CS
                     xxxxxxxxxxxxx.x...xxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxx......xxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18   2 vvgYysswesygn.n...ylpsaklthiiyaFakidgengkvvvsd.wedl......gnfeqlkklk.kkknpgvkvllsiGGwtdssgfslaas 84 
                     +++Y++++++ ++ +   y +s+  ++ i++F+  ++ n+++ +s+  +         + +q++++  + ++ g+kvlls+GG+t++ gfs++a+
      CCD26758.1  29 IAVYWGQNSAGTQeSlatYCQSSDADIFILSFLYEFP-NTNLDFSNaCS-EhstdgiLHCSQIAQDItTCQSLGKKVLLSLGGATGTYGFSSIAE 121
                     799***999997756665599****************.65555555333.14788886777777777788888********************65 PP

                     SHHHHHHHHHHHHHHH........HHCT...-SEEEEEES-TTTSTCHHHHHHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSHHHHHHHCHHHH CS
                     xxxxxxxxxxxxxxxx........xxxx...xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx RF
  Glyco_hydro_18  85 tdasrkkfadsvvsll........rkyg...fDGiDidweypggnpedkenytallkelrealdkakategkkllLsaavpasasdlskgydlpk 168
                         ++++a+++++l+        r+++   +DG+D+d e  ++      +y+al+++lr+    + +t  k++++saa++++++d+s+g +l +
      CCD26758.1 122 ----ATAYAETLWNLFgegstteiRPFDfavVDGFDFDVE-NNN----SVGYSALVQKLRS----LYETGSKQYYISAAPQCPYPDVSVG-PLLE 202
                     ....689*********8888877777779999********.444....789**********....88899****************9989.7777 PP

                     HHHHTSEEEEETTTSSSTTSSBE--SS-SSBTCSSHHHHHHHHHHTT--GG..GEEEEEESEEEEEEES CS
                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx..xxxxxxxxxxxxxxxx RF
  Glyco_hydro_18 169 iakylDyvnvmtYDfhgswdnvtghhaplydaslnvdeavkeylkagvpak..klvlGvpfygrawalv 235
                      ++++D++++++Y+ +   d+           ++n+d+ ++ y++   p +  kl+lG+p +  a+ ++
      CCD26758.1 203 -SENIDFLFIQFYNNYCNVDK-----------QFNWDTWLN-YAETISPNSdiKLFLGLPGSSTAAGSG 258
                     .7999********99987666...........566665442.33332443369*******996665443 PP

>> CBM_19  Carbohydrate binding domain (family 19)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   3.3         3   1.8e+04       6      15 ..     432     441 ..     428     465 .. 0.43
   2 ?   -2.3   0.6      0.76   4.6e+03       2      11 ..     479     488 ..     478     503 .. 0.80
   3 !   16.3   2.9   1.2e-06    0.0073      18      57 ..     632     672 ..     624     675 .. 0.90

  Alignments for each domain:
  == domain 1  score: -4.6 bits;  conditional E-value: 3
      CBM_19   6 latassalfs 15 
                   ta+s   s
  CCD26758.1 432 TITATSVYSS 441
                 4455544333 PP

  == domain 2  score: -2.3 bits;  conditional E-value: 0.76
      CBM_19   2 tttalatass 11 
                 ttt ++ta  
  CCD26758.1 479 TTTLAPTART 488
                 9999999965 PP

  == domain 3  score: 16.3 bits;  conditional E-value: 1.2e-06
      CBM_19  18 vanrsCssqskvaCtadGkYavCd.yGkWvvasCPsGvvCl 57 
                 + ++s  +  +vaC   G+Y++Cd  G W    C +G+ C 
  CCD26758.1 632 LNGKSGCTVGEVACSLRGQYSLCDeSGVWQYIDCAAGTTCF 672
                 678999999**************8459*************7 PP

>> ydhR  Putative mono-oxygenase ydhR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     7e-05      0.42      19      86 ..      85     149 ..      67     153 .. 0.83
   2 ?   -2.1   0.0      0.62   3.7e+03      43      63 ..     275     295 ..     265     307 .. 0.77

  Alignments for each domain:
  == domain 1  score: 10.6 bits;  conditional E-value: 7e-05
                 HHHHHHHHHTTSTTEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHHHHHGGGTSS--EEEEEEE- CS
        ydhR  19 alkelaesiaeepGliwKiWteneetkeaGGiYlFedeasaeaYlemhtarlksfgveevrvkvFevn 86 
                 +++++a++i++ + l  K+ ++    + a G+Y F++ a+a+aY e   +++ + + +e+r   F+v 
  CCD26758.1  85 HCSQIAQDITTCQSLGKKVLLS---LGGATGTYGFSSIAEATAYAETLWNLFGEGSTTEIRPFDFAVV 149
                 678999*********9999986...57899****************9999999999999998888886 PP

  == domain 2  score: -2.1 bits;  conditional E-value: 0.62
                 TTTEEEEEEEESSHHHHHHHH CS
        ydhR  43 etkeaGGiYlFedeasaeaYl 63 
                 +t+++GGi l++  ++ ++ +
  CCD26758.1 275 STSHFGGIALWDASQAFSNLI 295
                 678999999999888766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       567  (0.0316247); expected 358.6 (0.02)
Passed bias filter:                      302  (0.0168442); expected 358.6 (0.02)
Passed Vit filter:                        26  (0.00145016); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.24s 00:00:00.84 Elapsed: 00:00:00.41
# Mc/sec: 5023.94
//
Query:       CCD26759.1  [L=280]
Description: hypothetical protein NDAI_0I01900 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-11   43.8   0.0    5.3e-11   42.6   0.0    1.6  1  Methyltransf_16  Lysine methyltransferase
    3.7e-06   26.9   0.0    5.5e-06   26.3   0.0    1.2  1  Methyltransf_23  Methyltransferase domain
  ------ inclusion threshold ------
      0.073   12.8   2.3       0.98    9.2   0.0    2.4  2  Sda              Sporulation inhibitor A
       0.16   11.3   0.0       0.24   10.8   0.0    1.2  1  PrmA             Ribosomal protein L11 methyltransferase (Prm


Domain annotation for each model (and alignments):
>> Methyltransf_16  Lysine methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   1.2e-14   5.3e-11      17     173 ..      77     242 ..      60     243 .. 0.75

  Alignments for each domain:
  == domain 1  score: 42.6 bits;  conditional E-value: 1.2e-14
  Methyltransf_16  17 igrkvWdaavvlvkylekklakelganelsklsvlELGsGtGlvGlavaellpeakviltDlee..llellkknielnknalkskvkvevLdWg 108
                       g+ +W+a++ ++k+l          n +++++vlELG+ + l  ++ a+  +   v+ tD+++  l+ +++ n + +     ++++ve   Wg
       CCD26759.1  77 WGHLLWNAGIYTAKHLDL------YPNLVKNKNVLELGAAGALPSIVSALI-GAKMVVSTDYPDpeLISNIQFNADEQIPRDFQNIAVEGYIWG 163
                      57889******9999988......57899**********999999998888.7778889***98335555555555544477799********9 PP

  Methyltransf_16 109 eeleedllek...e........evDlilaaDcvYledslelLvkvLkellkkeskvlvayk.kr...reaekkFfkllek 173
                      ++  +d++++   +        ++Dli+ +D+v++++   +L+++ k+ll+k++k lv++  +r    + + +Ff++ ++
       CCD26759.1 164 NKY-DDIVKHitdKpsangetlKFDLIILSDLVFNHSEHHKLLSTTKDLLAKDGKALVVFSpHRpwlLDDDLQFFETAKE 242
                      976.55543211111122222369*******************************6665541446777889999988775 PP

>> Methyltransf_23  Methyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.2e-09   5.5e-06      12     133 ..      90     232 ..      83     264 .. 0.70

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 1.2e-09
  Methyltransf_23  12 klerllpklraggrvLdiGcGtGillevlrengfsvt.gvDlspeaveiaekakkaqkdqfdeqeaaepqg....................... 81 
                      k + l p+l ++++vL++G++    + v +  g++++   D  p + e++++++++ ++q      ++ q+                       
       CCD26759.1  90 KHLDLYPNLVKNKNVLELGAAGALPSIVSALIGAKMVvSTDY-P-DPELISNIQFNADEQI----PRDFQNiavegyiwgnkyddivkhitdkp 177
                      55667788999*********9997666669999976625664.3.4566555555555555....44433344444555555555566666666 PP

  Methyltransf_23  82 .......kfdlIvlrevlehvpdppellrqiatllkpgGylllseplaslkedrllldw 133
                             kfdlI+l+++  +   +++ll++ ++ll+ +G +l+  +    +++ +lld 
       CCD26759.1 178 sangetlKFDLIILSDLVFNHSEHHKLLSTTKDLLAKDGKALVVFS----PHRPWLLDD 232
                      6677888**********999999****************9988775....444444444 PP

>> Sda  Sporulation inhibitor A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.6     0.024   1.1e+02      23      43 ..       5      25 ..       3      27 .. 0.82
   2 ?    9.2   0.0   0.00022      0.98      10      28 ..     234     252 ..     229     254 .. 0.88

  Alignments for each domain:
  == domain 1  score: 2.7 bits;  conditional E-value: 0.024
         Sda 23 pDFIeLieeEierRsLshklk 43
                +D ++L +  i+rR+  h + 
  CCD26759.1  5 QDLVRLRKHTIHRRNVRHRIT 25
                5677888899********986 PP

  == domain 2  score: 9.2 bits;  conditional E-value: 0.00022
         Sda  10 ieaYekAlelnLdpDFIeL 28 
                 ++ +e+A+e  L p+FIe+
  CCD26759.1 234 LQFFETAKEHGLTPEFIEM 252
                 588**************97 PP

>> PrmA  Ribosomal protein L11 methyltransferase (PrmA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.3e-05      0.24     161     204 ..     100     144 ..      88     177 .. 0.70

  Alignments for each domain:
  == domain 1  score: 10.8 bits;  conditional E-value: 5.3e-05
        PrmA 161 egeevlDvGtGSGiLaiaaakLgakkvvavDi.DevAvkvakeNa 204
                 ++++vl +G+  ++ +i++a++gak vv +D+ D+  ++  + Na
  CCD26759.1 100 KNKNVLELGAAGALPSIVSALIGAKMVVSTDYpDPELISNIQFNA 144
                 5689***************************83444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       322  (0.0179597); expected 358.6 (0.02)
Passed bias filter:                      303  (0.0169); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.23s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 2200.85
//
Query:       CCD26760.1  [L=294]
Description: hypothetical protein NDAI_0I01910 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      2e-17   63.4   0.0    1.9e-14   53.6   0.0    2.1  1  ECH_1     Enoyl-CoA hydratase/isomerase
    2.5e-08   33.8   0.0    9.2e-08   31.9   0.0    1.9  1  ECH_2     Enoyl-CoA hydratase/isomerase
  ------ inclusion threshold ------
       0.01   15.8   0.0      0.017   15.0   0.0    1.4  1  Syndecan  Syndecan domain
      0.016   14.7   0.6      0.037   13.5   0.3    1.6  2  SOP4      Suppressor of PMA 1-7 protein


Domain annotation for each model (and alignments):
>> ECH_1  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   4.2e-18   1.9e-14       8     217 ..      25     262 ..      23     272 .. 0.74

  Alignments for each domain:
  == domain 1  score: 53.6 bits;  conditional E-value: 4.2e-18
                 EEEE--CGCTTEE-HHHHHHHHHHHHHHHHSTTECEEEEEEBTSEEEEEB-HHHHHHHHC...HHHHHHH.........CCHHHHHHHHH......... CS
       ECH_1   8 viklnrPeavNalsaelltEliqalekleddksvravvLtGgdkaFaaGadlkemaeeek...akqallk.........eevlelwtkly......... 85 
                  ikln Pe +N ++ +    l   l+ +e++k+v   vL +++++F++Gad++ + +++    +k+ +++         +e+++ w  ++         
  CCD26760.1  25 IIKLNSPETLNCMTSHDYIYLCTLLQMAEENKEVYFTVLQSSGRFFSSGADFRFISKHKDfldSKESKFRdahedpakvSELNKIWLDAFvsrnlfvtd 123
                 59**************************************************98877654544444444311111111134455665443111111111 PP

                 ...HSSSEEEEEE-SEEETHHHHHHHHSSEEE.EETTTEEE-GGGGGTS--CTTCHHHHHHHHHHHHHHHHHHHT-EEEHHHHHHCTSSSEEESG..GG CS
       ECH_1  86 ...tvpkpviaavnGaaigGGlelalacDivi.aadnasfglnelklGlipgaggtqilarkvGkskAeeilllgkkisaqealkvGlvdkvvpe..eq 178
                    +  k++ia +nG ++g  + l l cD+v+ + d+  f  +++klGl+ + g + +l+ k+G ++  e l++ ++i+ ++++++ +v++   +  e+
  CCD26760.1 124 afiNHSKILIACMNGPVVGLTAALCLLCDLVYsMNDKVYFQCPFAKLGLVCEGGTSVTLPLKLGYNLSFEKLMFSENIEFNDLKDRVIVKNYQMQdtEK 222
                 1115689************************95567777**************************************************9877763345 PP

                 HHHHHHHHH.HHHHHSCHHHHHHHHHHHHHHHHHHHHHHH CS
       ECH_1 179 lleealela.eklaekspaalrqlkealnakledalaeql 217
                 + e  l+ + +k+ +    ++ ++k++ln+++++ l+++ 
  CCD26760.1 223 FNEIVLKDLkNKISKVYLPSCLAMKKILNNNINSDLERAN 262
                 5555554330334433444556777777777776666554 PP

>> ECH_2  Enoyl-CoA hydratase/isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0     2e-11   9.2e-08       3     140 ..      25     183 ..      23     193 .. 0.82

  Alignments for each domain:
  == domain 1  score: 31.9 bits;  conditional E-value: 2e-11
                 EEEE--GGGTT-B-HHHHHHHHHHHHHHCC-TT-SEEEEEESSSSECE--B--HHHHHHHHCS....................-THH...HHHHHHHHH CS
       ECH_2   3 vitLnrpkalNaLslemvralkealkewekddevklvvlkgagekafCAGgDvralyeaakeg....................kkee...eeffreeYk 78 
                 +i+Ln p++lN ++ +    l   l+  e+++ev + vl+++g + f++G D+r + ++++                      +  +   ++f++++  
  CCD26760.1  25 IIKLNSPETLNCMTSHDYIYLCTLLQMAEENKEVYFTVLQSSG-RFFSSGADFRFISKHKDFLdskeskfrdahedpakvselN--KiwlDAFVSRNLF 120
                 799**************************************87.***********99876544445677888776665443221..2345667777666 PP

                 HHHHHHC-SS-EEEEE-BEEETHHHHHHTTSSEEE.E-TT-EEE--GGGGT----TTHHHHHH CS
       ECH_2  79 lnyliatypkpvvalmdGivmGgGvGlsvhgsfrv.vtertvfAmPEtaIGlfPDvGgsyfLs 140
                 +  +  + +k ++a m+G v+G  ++l + + +   + ++  f  P  ++Gl+++ G+s  L+
  CCD26760.1 121 VTDAFINHSKILIACMNGPVVGLTAALCLLCDLVYsMNDKVYFQCPFAKLGLVCEGGTSVTLP 183
                 66667778999*************999999987652678889999*99****99999999887 PP

>> Syndecan  Syndecan domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.0   0.0   3.9e-06     0.017       2      37 ..     125     160 ..     124     161 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.0 bits;  conditional E-value: 3.9e-06
    Syndecan   2 llerpevlaaviggvvvgllfaillvlflvYRmrKK 37 
                 +++++++l a + g vvgl  a +l+  lvY m  K
  CCD26760.1 125 FINHSKILIACMNGPVVGLTAALCLLCDLVYSMNDK 160
                 7899*****************************766 PP

>> SOP4  Suppressor of PMA 1-7 protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.5   2.2e+03     122     139 ..      31      48 ..      26      73 .. 0.55
   2 ?   13.5   0.3   8.3e-06     0.037      56     116 ..     181     242 ..     176     269 .. 0.90

  Alignments for each domain:
  == domain 1  score: -2.1 bits;  conditional E-value: 0.5
        SOP4 122 PekLeeleadpyieitlv 139
                 Pe+L+ + ++ yi + ++
  CCD26760.1  31 PETLNCMTSHDYIYLCTL 48 
                 666666666666655332 PP

  == domain 2  score: 13.5 bits;  conditional E-value: 8.3e-06
        SOP4  56 dlPlnkgvnettyfvlvsssldfnLkPnRiLieftnleeegekk.levkafknvfGreyfps 116
                  lPl+ g n + +  + s+ ++fn   +R++++  ++++ ++ + + +k  kn + + y+ps
  CCD26760.1 181 TLPLKLGYNLSFEKLMFSENIEFNDLKDRVIVKNYQMQDTEKFNeIVLKDLKNKISKVYLPS 242
                 59**********************999*****999988877766699**************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                       712  (0.0397122); expected 358.6 (0.02)
Passed bias filter:                      434  (0.0242066); expected 358.6 (0.02)
Passed Vit filter:                        38  (0.00211947); expected 17.9 (0.001)
Passed Fwd filter:                         4  (0.000223102); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.47u 0.23s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 2304.12
//
Query:       CCD26761.1  [L=374]
Description: hypothetical protein NDAI_0I01920 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.1e-15   58.2   7.4    1.1e-15   58.2   7.4    1.6  2  DUF1640   Protein of unknown function (DUF1640)
     0.0014   19.1   0.2     0.0042   17.6   0.2    1.8  1  DsrC      DsrC like protein
  ------ inclusion threshold ------
       0.01   15.4   3.6       0.01   15.4   3.6    2.3  3  DUF4619   Domain of unknown function (DUF4619)


Domain annotation for each model (and alignments):
>> DUF1640  Protein of unknown function (DUF1640)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.3       1.1   6.4e+03      71      71 ..      92      92 ..      55     115 .. 0.47
   2 !   58.2   7.4   1.8e-19   1.1e-15       2     169 ..     124     312 ..     123     316 .. 0.86

  Alignments for each domain:
  == domain 1  score: -3.0 bits;  conditional E-value: 1.1
     DUF1640 71 r 71
                 
  CCD26761.1 92 P 92
                2 PP

  == domain 2  score: 58.2 bits;  conditional E-value: 1.8e-19
     DUF1640   2 DThalvrrLeekGft..................keqAeaimsaltevlneslek.vakslvskselekseylqkaalselrkevqisersefaalrset 81 
                 DT++++++L +  +                    +  ea+ ++l ++ln++  +  + +++   el+k++ l+++  se++  +q+s++ + ++ + + 
  CCD26761.1 124 DTMEVFEKLSKVNWVnkeekeegmnreklarlnIQRKEALLTVLLHLLNDEFYSsYNDKYLRDLELDKQSHLFNSLSSEIQYIIQNSRDIQLNNQHLQI 222
                 6666666666555555666666666666666665666899999999999998651566799999*********************************** PP

     DUF1640  82 eklqreleklkqkLre.eidklkadirldlnleKgrireelakleakiqelnnkidrev.salrteiEsvKldvikyliglvvgilavgl 169
                  kl r+l+ ++ +++e  i++lk+d +l +n++K + +   ++++ ++++ +nki++++ + +r++iE+ ++++++  +  +++++ ++l
  CCD26761.1 223 MKLIRDLDSIQDEINElTINDLKKDCQLAFNNQKFENTLLYKNINLELNDSSNKITINIlAGIRSSIENFRWQTTRSGLLALLVLVFLIL 312
                 ***************9679*********************************************************99988888777776 PP

>> DsrC  DsrC like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2   7.1e-07    0.0042       6      88 ..     186     268 ..     183     284 .. 0.85

  Alignments for each domain:
  == domain 1  score: 17.6 bits;  conditional E-value: 7.1e-07
        DsrC   6 eieldeegfLkdledwseevaealakeegieLteehwevikflrey..yeeygvapairklvkalkkelgeekgnskelyelFpk 88 
                 ++eld++++L +    s+e+  ++ ++ +i+L+++h +++k++r+    +++ +  +i++l k+++ +++++k +++ ly+  + 
  CCD26761.1 186 DLELDKQSHLFNS--LSSEIQYIIQNSRDIQLNNQHLQIMKLIRDLdsIQDEINELTINDLKKDCQLAFNNQKFENTLLYKNINL 268
                 6899999999875..899**************************8621556668899******************9999986655 PP

>> DUF4619  Domain of unknown function (DUF4619)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.4   3.6   1.7e-06      0.01     165     254 ..      55     145 ..      43     151 .. 0.85
   2 ?    0.9   0.9     0.044   2.7e+02     138     206 ..     207     277 ..     184     293 .. 0.63
   3 ?   -5.4   2.1         3   1.8e+04     187     198 ..     322     333 ..     315     363 .. 0.40

  Alignments for each domain:
  == domain 1  score: 15.4 bits;  conditional E-value: 1.7e-06
     DUF4619 165 eaqmELkkslhrea.rinkqklrdhkakkileslprndd.edlltalpdetlnrepgnsqdaeflkkqarndylprkigkletwlleqearg 254
                 +  m Lk s+++e+ +i ++ l+d ++   + s +++ + edllt+l+++ +n+   n +   f+++q  +  + +k +k++ w+ ++e+++
  CCD26761.1  55 QKSMSLKPSPNKEQqKIVQDTLKDSNTSLNSFSSEKEPEnEDLLTRLHEQLINEINTNLNHPTFAENQVDTMEVFEKLSKVN-WVNKEEKEE 145
                 456899*9999985389999****9998887777776656******************************999999**9995.888887665 PP

  == domain 2  score: 0.9 bits;  conditional E-value: 0.044
     DUF4619 138 mqsltytsgkrqylhKmkmLemnrkrqeaqmELk.kslhreari..nkqklrdhkakkileslprnddedll 206
                 +q  +  + ++q+l+ mk++      q+  +EL   +l+++ ++  n+qk ++    k + +l+ nd+++ +
  CCD26761.1 207 IQNSRDIQLNNQHLQIMKLIRDLDSIQDEINELTiNDLKKDCQLafNNQKFENTLLYKNI-NLELNDSSNKI 277
                 445555555678888888775444444444777535677777765577777666555544.34555555555 PP

  == domain 3  score: -5.4 bits;  conditional E-value: 3
     DUF4619 187 dhkakkileslp 198
                 + + +   ++ +
  CCD26761.1 322 ENNNNNNNNNHD 333
                 222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1770  (0.0987227); expected 358.6 (0.02)
Passed bias filter:                      508  (0.028334); expected 358.6 (0.02)
Passed Vit filter:                        47  (0.00262145); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.22s 00:00:00.74 Elapsed: 00:00:00.39
# Mc/sec: 2878.55
//
Query:       CCD26762.1  [L=185]
Description: hypothetical protein NDAI_0I01930 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    1.7e-19   69.9   0.5    1.7e-19   69.9   0.5    2.1  2  RF-1      RF-1 domain
  ------ inclusion threshold ------
        6.1    5.6   6.7        7.7    5.2   6.7    1.1  1  MDM10     Mitochondrial distribution and morphology protein 1


Domain annotation for each model (and alignments):
>> RF-1  RF-1 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.5   1.9e-23   1.7e-19       6      94 ..      32     120 ..      28     133 .. 0.83
   2 ?   -1.1   5.3       0.2   1.8e+03      69     108 ..     135     171 ..     127     178 .. 0.50

  Alignments for each domain:
  == domain 1  score: 69.9 bits;  conditional E-value: 1.9e-23
                 E--GGGEEEEEE-.--SSSSSSGCSSSCEEEEEETTTTEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCHTTTTT-.S.-S- CS
        RF-1   6 eidekdleidtfr.ssGaGGQnVNktesaVrlthlptgvivvecqeeRsqekNrekAlerLkaklkekeleeekeeekkrrvkkekkkig 94 
                 e+ ek+ e ++++  +G+GGQ++Nk +s+V+l h+ptg + ++cqe+Rs+e+Nr+ A+e+++ +l+++ l  ek+  k  + +++ ++++
  CCD26762.1  32 ELMEKECEEKFMHgGRGPGGQKINKCNSKVQLRHMPTG-LSISCQETRSREQNRKIAREKMALELERYTLMMEKKVDKDGEDEDDDNEVE 120
                 6789999999999678**********************.8*************************8877777776666555444444444 PP

  == domain 2  score: -1.1 bits;  conditional E-value: 0.2
                 HHHHHHHHCCCCCHTTTTT-.S.-S---S.--ECEEEECGC CS
        RF-1  69 lkekeleeekeeekkrrvkkekkkigtgs.sekiRtynkkp 108
                 l+e ++e+++++++k r  ++ k i  ++ +e++R+ ++++
  CCD26762.1 135 LMEWNREKKRSKKRKGR--AKYKAI--QEiKEEERLAKLQE 171
                 33333333333333333..333333..44457778777754 PP

>> MDM10  Mitochondrial distribution and morphology protein 10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.7   0.00086       7.7     323     396 ..      77     161 ..      68     181 .. 0.69

  Alignments for each domain:
  == domain 1  score: 5.2 bits;  conditional E-value: 0.00086
       MDM10 323 seeeeeeeekekeeesvkskkeakkkkkekekeeekstfssslekadkeksveesfqakleWrldkeekeeek...........k 396
                 ++++e++++ ++e+ + + ++ +   +k+ +k+ e ++  +++e++d + +++e+ qa +eW ++k++++++k           k
  CCD26762.1  77 TRSREQNRKIAREKMALELERYTLMMEKKVDKDGEDEDDDNEVENTDPRWTITEREQALMEWNREKKRSKKRKgrakykaiqeiK 161
                 33444455555555555555555556666666666678899999*********************99999888666654443331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1642  (0.0915835); expected 358.6 (0.02)
Passed bias filter:                      410  (0.022868); expected 358.6 (0.02)
Passed Vit filter:                        36  (0.00200792); expected 17.9 (0.001)
Passed Fwd filter:                         3  (0.000167327); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.26s 00:00:00.72 Elapsed: 00:00:00.43
# Mc/sec: 1293.31
//
Query:       CCD26763.1  [L=1260]
Description: hypothetical protein NDAI_0I01940 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model        Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-17   62.7   4.2    6.1e-17   61.5   4.2    1.7  1  Fungal_trans  Fungal specific transcription factor domain
    1.2e-07   31.7   7.8    3.1e-07   30.4   7.8    1.7  1  Zn_clus       Fungal Zn(2)-Cys(6) binuclear cluster domain


Domain annotation for each model (and alignments):
>> Fungal_trans  Fungal specific transcription factor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   4.2   6.8e-21   6.1e-17       1     266 [.     408     652 ..     408     653 .. 0.83

  Alignments for each domain:
  == domain 1  score: 61.5 bits;  conditional E-value: 6.8e-21
  Fungal_trans   1 ldrffsnfhpqfpilhk...psflpktssenssksayasplll.....lailalGalfsesetkesnssltsesqefiafplraeilihedfsspss 89 
                   ld+ff+ ++  +p+l++    +f++++  +n+  s++++++ +     ++++++ a +  ++ k++  +  +    +  + +r+    ++ ++   +
    CCD26763.1 408 LDTFFTRLQFKYPLLDEkeiYNFHNHY-TTNDIHSYSKFHFHFasgrmWLVFSISACLHMTTGKYKGLPPFR----YFSTAVRH----IARCENKLN 495
                   799**************9999999999.55555555555555588********************9666666....22233343....356778888 PP

  Fungal_trans  90 slwilqsLlllelyektssdralher.hhgvavr.larslgLhrnpsyvgkkslwklweeeaesrrRlwwaaFylDktialklGrppllddsqinlp 184
                   +++ ++ L ll ly   +++ +l+ + ++  ++  +  +l+L+ + +         ++++ a  r Rl+w+++ l+++i++ +G p+++++s+inlp
    CCD26763.1 496 DVQKVEVLTLLILYIVRTDRDSLVLYeIIKDVMDiCQNKLSLNTWNP---------QDPF-ANKRLRLFWCVYLLERMICVAVGKPYTIKESDINLP 582
                   899999999999999999997777777****************7775.........5667.88889*********************99******** PP

  Fungal_trans 185 LPcddddlwesddaseetlvetklsneeksrkiasfllaLkkilsk...iagsllsiekqlqqrdlqseklswveeleraldnWr 266
                   L+++ +     ++++++++++         + + ++ l+L +i sk   i+  +l i+ ++  ++ q ++l+ v++++r l+ Wr
    CCD26763.1 583 LFNENS----FNTKENSKQQG---------VHFINQSLKLRRIESKfveILQ-ILPIGVKSAATVRQ-KQLPLVKTFFRDLELWR 652
                   **7777....55566666655.........66**************776677.89999999999999.****************8 PP

>> Zn_clus  Fungal Zn(2)-Cys(6) binuclear cluster domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   7.8   3.5e-11   3.1e-07       1      31 [.      39      69 ..      39      74 .. 0.93

  Alignments for each domain:
  == domain 1  score: 30.4 bits;  conditional E-value: 3.5e-11
                SS-HHHHHCT---STSSSS-HHHHHCTHHHC CS
     Zn_clus  1 haCdnCrkkKvKCdakkPaCsnCkklnleCt 31
                +aC  Cr++K KCd + P+C+ C k +++C+
  CCD26763.1 39 TACLLCRRRKQKCDHMLPSCTACLKAGVKCV 69
                69****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1260 residues searched)
Target model(s):                       17929  (3037991 nodes)
Passed MSV filter:                      1192  (0.0664845); expected 358.6 (0.02)
Passed bias filter:                      399  (0.0222544); expected 358.6 (0.02)
Passed Vit filter:                        32  (0.00178482); expected 17.9 (0.001)
Passed Fwd filter:                         2  (0.000111551); expected 0.2 (1e-05)
Initial search space (Z):              17929  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.27s 00:00:01.08 Elapsed: 00:00:00.46
# Mc/sec: 8312.33
//
Query:       CCD26764.1  [L=757]
Description: hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------        -----------
    2.2e-57  194.1   6.5    2.2e-57  194.1   6.5    1.7  2  CPSF73-100_C     Pre-mRNA 3'-end-processing endonuclease poly
    1.2e-30  106.0   0.0    2.5e-30  105.0   0.0    1.6  1  Beta-Casp        Beta-Casp domain
    6.4e-20   71.4   0.0    1.4e-19   70.2   0.0    1.6  1  Lactamase_B_6    Metallo-beta-lactamase superfamily domain
    1.1e-19   71.2   0.6    1.8e-19   70.5   0.6    1.4  1  Lactamase_B      Metallo-beta-lactamase superfamily
    7.8e-18   64.2   0.0    1.7e-17   63.1   0.0    1.6  1  RMMBL            Zn-dependent metallo-hydrolase RNA specifici
    1.6e-06   27.8   0.2    3.9e-05   23.2   0.2    2.6  2  Lactamase_B_2    Beta-lactamase superfamily domain
     0.0041   17.0   0.2      0.023   14.6   0.2    2.2  1  Lactamase_B_3    Beta-lactamase superfamily domain
  ------ inclusion threshold ------
       0.02   14.1   0.0      0.062   12.5   0.0    1.8  2  Beta_lactamase3  Putative beta-lactamase-like family


Domain annotation for each model (and alignments):
>> CPSF73-100_C  Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.2       2.3   5.1e+03     120     141 ..     467     489 ..     441     497 .. 0.44
   2 !  194.1   6.5   9.9e-61   2.2e-57       2     216 ..     501     754 ..     500     755 .. 0.89

  Alignments for each domain:
  == domain 1  score: -3.2 bits;  conditional E-value: 2.3
  CPSF73-100_C 120 rssk.khshshkekleeknshak 141
                   +ss+ +++h+ ke+ ++k+ +++
    CCD26764.1 467 QSSDgSEKHQSKEDGTAKAVEEE 489
                   23333444444333333322222 PP

  == domain 2  score: 194.1 bits;  conditional E-value: 9.9e-61
  CPSF73-100_C   2 lvsGvLVq..kdfklsllapeDLre.ytgLstttitqkqrlplsasiellkwaleqlfgdve.......................eleekekkktll 72 
                   +vsG+LV+  k+++l+l++ +DLre +t+Lstt+++++q++ ++++ el++w+++q+fg v+                       +++++++k  l+
    CCD26764.1 501 VVSGILVSdeKNYDLNLVSLSDLREhHTELSTTILRERQTVYVNCKKELIYWHICQMFGVVDvlvdeedithklnvkiekeiedgTISKESSKLILK 597
                   79*****999***************99***********************************88888777777777777777777666666777*** PP

  CPSF73-100_C  73 vmgcvtvrveskgeveleWesnllnDmiADsviavllsvesspasvkrssk.khshsh....kekleeknshaklskeerlerllllLeaqFGedkv 164
                   vmg+++++v  +++++leW+++l++D++ADs+ia+l+sv+s pasvk+ss+ +hsh h    +++ + +++ +++s+ +++++++ l+++qFGe+ +
    CCD26764.1 598 VMGDIRLTVV-DNMAILEWTQGLISDTVADSIIAILMSVDSAPASVKMSSTcNHSHGHdevsDNTAKIEEELEQHSQVWKIKQISNLFREQFGETFT 693
                   **********.*****************************************999999989888888899999***********************6 PP

  CPSF73-100_C 165 ielpke......pvpgve..vkvdkkeakidletleV.ecesevlkdrveavveravetva 216
                   i l+k       +++ +   v+++k+ea+i++++++V ec+s++lk rve++++ + ++va
    CCD26764.1 694 IFLDKLteaksnDTEDILgaVTIGKNEARINFSKMRVeECNSNPLKGRVESLLKIGSDLVA 754
                   66333334455544444446*****************99****************999997 PP

>> Beta-Casp  Beta-Casp domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.0   0.0   1.1e-33   2.5e-30       1     109 [.     215     340 ..     215     341 .. 0.88

  Alignments for each domain:
  == domain 1  score: 105.0 bits;  conditional E-value: 1.1e-33
                 HHHHHHHH..HCTT..TT..S-S-EEEEE-HHHHHHHHHGGGGGGE-SHH....HHH.H..HH.......................HS-SSEEEEES-T CS
   Beta-Casp   1 aqellylLeelwkekkle..dlklpiyldsplaskatevYkeyaeveakslewmesk.keeln.......................sskgpkvilassg 73 
                 aqel+++L+e+w+++++e  d ++piy++s+la+k+++v+++y       +++m+++ ++  +                       ++ gp+v+las+g
  CCD26764.1 215 AQELMLILDEYWAQHAEElgDGQVPIYYASNLARKCMSVFQTY-------VNMMNDDiRK--KfrdsqtnpfifknisylknleefQDLGPSVMLASPG 304
                 7*************9955676679*******************.......7788888743..122346779999999999999999888********** PP

                 TSSSSHHHHHHHHHTTSTTSEEEESS---TTSHHHH CS
   Beta-Casp  74 mlegGrsrellkklledprntvilvgyqaegTlgrk 109
                 ml++G sr+ll+++++d++n+v+++gy+